6743 147 46 2 chr3 0 719 -218036439 + Tigger3b DNA MER2_type 1 794 -2234 2127 124 3 0 chr3 719 1017 -218036141 - AluSx SINE Alu -13 299 1 6743 147 46 2 chr3 1017 1476 -218035682 + Tigger3b DNA MER2_type 794 1231 0 21 0 0 0 chr3 1476 1497 -218035661 + AT_rich Low_complexity Low_complexity 1 21 0 759 247 70 29 chr3 1609 1934 -218035224 - LTR33A LTR ERVL 0 523 149 265 343 102 0 chr3 1997 2134 -218035024 + MARNA DNA Mariner 70 220 -366 234 336 58 19 chr3 2483 2587 -218034571 - MIR SINE MIR -8 254 147 1553 186 16 19 chr3 2592 2903 -218034255 - AluJb SINE Alu -2 310 1 588 21 105 0 chr3 2945 3088 -218034070 + (TA)n Simple_repeat Simple_repeat 2 159 0 231 271 104 0 chr3 3282 3378 -218033780 + L1ME3A LINE L1 6035 6140 -30 24 0 0 0 chr3 3513 3537 -218033621 + AT_rich Low_complexity Low_complexity 1 24 0 242 273 0 0 chr3 3994 4049 -218033109 + L2 LINE L2 3257 3311 -2 2144 105 3 3 chr3 5086 5382 -218031776 + AluSc SINE Alu 1 296 -13 22579 43 5 4 chr3 5717 9160 -218027998 - L1PA5 LINE L1 -140 6014 2570 8688 91 11 12 chr3 9776 10112 -218027046 - L1P3 LINE L1 -337 5817 5482 2336 102 7 0 chr3 10112 10417 -218026741 - AluSg SINE Alu -3 307 1 8688 91 11 12 chr3 10417 11787 -218025371 - L1P3 LINE L1 -672 5482 4110 362 251 117 64 chr3 13354 13525 -218023633 + L3 LINE CR1 1077 1256 -321 279 0 0 0 chr3 13741 13772 -218023386 + (CA)n Simple_repeat Simple_repeat 2 32 0 189 336 133 8 chr3 14189 14317 -218022841 + L2 LINE L2 3170 3313 0 239 203 29 14 chr3 14335 14404 -218022754 + GA-rich Low_complexity Low_complexity 3 72 0 313 318 16 8 chr3 14541 14670 -218022488 - MIR SINE MIR -10 252 123 239 202 0 43 chr3 17393 17487 -218019671 + CT-rich Low_complexity Low_complexity 4 93 0 2056 115 7 3 chr3 17713 18009 -218019149 + AluSq SINE Alu 1 297 -16 315 71 0 0 chr3 18377 18419 -218018739 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1873 147 31 0 chr3 18422 18708 -218018450 - AluSx SINE Alu -17 295 1 4666 179 55 50 chr3 18979 19136 -218018022 + L1MB3 LINE L1 185 340 -6044 243 0 0 0 chr3 19136 19163 -218017995 + (CAA)n Simple_repeat Simple_repeat 2 28 0 4666 179 55 50 chr3 19163 19343 -218017815 + L1MB3 LINE L1 340 518 -5866 2675 22 0 13 chr3 19343 19658 -218017500 - AluYa5 SINE Alu 0 311 1 4666 179 55 50 chr3 19658 20448 -218016710 + L1MB3 LINE L1 518 1319 -5065 * 6120 214 48 16 chr3 20442 22114 -218015044 + L1MB3 LINE L1 3909 5688 -731 2754 88 3 0 chr3 22114 22477 -218014681 + THE1B LTR MaLR 1 364 0 6120 214 48 16 chr3 22477 23231 -218013927 + L1MB3 LINE L1 5688 6416 -3 315 195 131 22 chr3 23260 23435 -218013723 - L1M LINE L1 -743 5403 5237 621 139 32 9 chr3 24448 24554 -218012604 - LTR12 LTR ERV1 -63 651 410 535 136 0 5 chr3 24567 24667 -218012491 + L1M3 LINE L1 5720 5816 -352 700 179 14 4 chr3 24667 24827 -218012331 - pTR5 LTR ERV1 -2122 316 49 257 274 0 0 chr3 24827 24900 -218012258 - LTR30 LTR ERV1 -98 624 552 1768 108 7 54 chr3 24902 25198 -218011960 - LTR12 LTR ERV1 -432 282 1 554 189 71 53 chr3 25277 25558 -218011600 - pTR5 LTR ERV1 -1410 1028 743 202 322 52 26 chr3 25583 25698 -218011460 + MIR3 SINE MIR 37 154 -54 402 243 0 18 chr3 25707 25826 -218011332 + MER69 DNA AcHobo 8 2469 -57 22 0 0 0 chr3 26392 26414 -218010744 + AT_rich Low_complexity Low_complexity 1 22 0 205 277 20 0 chr3 26414 26515 -218010643 + (TA)n Simple_repeat Simple_repeat 1 103 0 569 300 94 9 chr3 26600 26833 -218010325 + MIR SINE MIR 9 261 -1 355 244 13 0 chr3 27793 27871 -218009287 - MER117 DNA MER1_type -45 152 74 884 200 31 20 chr3 28692 28887 -218008271 - MER20 DNA MER1_type 0 219 23 228 333 0 0 chr3 28891 28951 -218008207 - MER20 DNA MER1_type -159 60 1 224 290 14 0 chr3 29158 29227 -218007931 + (TAG)n Simple_repeat Simple_repeat 1 70 0 255 250 0 42 chr3 29240 29312 -218007846 - MIR SINE MIR -76 186 118 203 204 19 0 chr3 30218 30272 -218006886 + (TA)n Simple_repeat Simple_repeat 1 55 0 336 306 57 0 chr3 30319 30443 -218006715 + MIR SINE MIR 100 230 -32 185 400 0 18 chr3 32949 33059 -218004099 + MIR3 SINE MIR 92 199 -9 544 209 52 33 chr3 33240 33393 -218003765 - MER103 DNA DNA -1 165 10 476 300 81 37 chr3 33404 33867 -218003291 + LTR33 LTR ERVL 8 521 0 225 333 11 33 chr3 34177 34267 -218002891 - L2 LINE L2 -10 3262 3175 619 315 22 26 chr3 34339 34571 -218002587 - MIR SINE MIR -1 261 31 1284 175 0 9 chr3 34798 35026 -218002132 + L1PA16 LINE L1 5683 5908 -258 979 182 35 5 chr3 35127 35330 -218001828 + L1PA16 LINE L1 5941 6149 -17 37 23 0 0 chr3 35333 35377 -218001781 + AT_rich Low_complexity Low_complexity 1 44 0 25 75 0 0 chr3 36908 36961 -218000197 + AT_rich Low_complexity Low_complexity 1 53 0 594 99 0 0 chr3 37177 37268 -217999890 + (TC)n Simple_repeat Simple_repeat 1 91 0 24 0 0 0 chr3 37456 37480 -217999678 + AT_rich Low_complexity Low_complexity 1 24 0 378 0 0 0 chr3 37503 37545 -217999613 + (CA)n Simple_repeat Simple_repeat 2 43 0 245 182 0 0 chr3 38164 38208 -217998950 - L2 LINE L2 0 3313 3270 238 269 9 46 chr3 38885 38993 -217998165 - MER103 DNA DNA -55 111 8 1020 239 31 82 chr3 39362 39751 -217997407 - MLT1A2 LTR MaLR -5 369 1 386 283 51 36 chr3 40090 40228 -217996930 - L2 LINE L2 0 3272 3133 330 355 106 43 chr3 41807 42473 -217994685 + L2 LINE L2 2560 3255 -17 208 239 11 34 chr3 42475 42563 -217994595 + (TA)n Simple_repeat Simple_repeat 2 87 0 317 261 0 33 chr3 42565 42657 -217994501 - L1MC4 LINE L1 -1340 6702 6614 36 77 0 0 chr3 42657 42735 -217994423 + AT_rich Low_complexity Low_complexity 1 78 0 2504 134 41 24 chr3 42752 43171 -217993987 + MSTB1 LTR MaLR 7 432 0 2007 110 3 14 chr3 44694 45001 -217992157 - AluSx SINE Alu 0 306 3 704 243 14 43 chr3 45377 45631 -217991527 + L1MC5 LINE L1 6573 6830 -1007 1426 174 9 0 chr3 45634 45858 -217991300 + AluSq SINE Alu 3 228 -85 404 230 101 14 chr3 46033 46181 -217990977 + L1MC5 LINE L1 7028 7188 -773 206 32 32 0 chr3 46305 46336 -217990822 + (CA)n Simple_repeat Simple_repeat 1 32 0 1006 248 56 55 chr3 46403 46495 -217990663 + L1MC5 LINE L1 7287 7377 -584 210 37 0 0 chr3 46495 46522 -217990636 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1006 248 56 55 chr3 46522 46793 -217990365 + L1MC5 LINE L1 7377 7646 -315 2284 89 14 0 chr3 46793 47085 -217990073 + AluSc SINE Alu 1 296 -13 1006 248 56 55 chr3 47085 47358 -217989800 + L1MC5 LINE L1 7646 7925 -36 1755 235 28 11 chr3 47580 48039 -217989119 - MLT1C LTR MaLR 0 467 1 273 29 0 0 chr3 48189 48223 -217988935 + (CAT)n Simple_repeat Simple_repeat 2 35 0 219 264 31 70 chr3 48551 48680 -217988478 + MIR SINE MIR 136 259 -3 25 0 0 0 chr3 48972 48997 -217988161 + AT_rich Low_complexity Low_complexity 1 25 0 325 313 223 18 chr3 49071 49237 -217987921 + MIR SINE MIR 15 214 -48 201 323 175 21 chr3 49492 49681 -217987477 + L2 LINE L2 2831 3048 -224 276 137 0 0 chr3 49821 49872 -217987286 + (TGAA)n Simple_repeat Simple_repeat 2 52 0 1786 260 46 8 chr3 51275 51860 -217985298 + L1 LINE L1 2273 2879 -3267 2463 152 7 7 chr3 51860 52294 -217984864 + L1MB1 LINE L1 5733 6166 -2 1955 131 7 0 chr3 52358 52675 -217984483 + AluSx SINE Alu 1 319 0 384 306 58 67 chr3 54606 54936 -217982222 + Charlie8 DNA MER1_type 211 537 -1880 354 294 108 37 chr3 55217 55456 -217981702 - MIR SINE MIR -3 259 6 505 222 0 0 chr3 56461 56551 -217980607 + MER45A DNA AcHobo 89 178 0 219 367 33 22 chr3 56551 56641 -217980517 + MER91A DNA MER1_type 103 193 -3 222 0 79 0 chr3 59543 59581 -217977577 + (TA)n Simple_repeat Simple_repeat 2 42 0 196 411 78 17 chr3 59709 59889 -217977269 + L2 LINE L2 2553 2743 -571 183 222 0 0 chr3 59889 59934 -217977224 + (TA)n Simple_repeat Simple_repeat 2 46 0 22 0 0 0 chr3 60070 60092 -217977066 + AT_rich Low_complexity Low_complexity 1 22 0 321 310 159 31 chr3 60207 60433 -217976725 + MIR SINE MIR 5 259 -3 1737 168 3 7 chr3 60693 60984 -217976174 - AluJb SINE Alu -16 296 7 265 301 12 0 chr3 61805 61888 -217975270 - L1MC4 LINE L1 -1340 6702 6619 1076 233 166 14 chr3 61890 62234 -217974924 + MSTD LTR MaLR 1 396 0 6554 239 62 20 chr3 62240 63900 -217973258 + MSTD-int LTR MaLR 6 1735 0 717 194 70 47 chr3 63900 64204 -217972954 + MSTD LTR MaLR 1 311 -54 1676 145 11 0 chr3 64204 64473 -217972685 + L1PA16 LINE L1 5886 6157 -9 245 238 0 16 chr3 64500 64563 -217972595 + MSTD LTR MaLR 304 365 0 674 236 72 24 chr3 65139 65347 -217971811 - MER20 DNA MER1_type -1 218 1 297 0 0 0 chr3 66704 66737 -217970421 + (TG)n Simple_repeat Simple_repeat 2 34 0 285 310 9 9 chr3 67994 68107 -217969051 + MLT1L LTR MaLR 503 615 0 400 182 10 10 chr3 70065 70164 -217966994 + CT-rich Low_complexity Low_complexity 2 100 0 446 181 14 199 chr3 70281 70573 -217966585 + LTR38B LTR ERV1 1 238 -372 365 219 35 84 chr3 70702 70980 -217966178 + LTR38B LTR ERV1 291 598 0 21 36 0 0 chr3 71725 71753 -217965405 + AT_rich Low_complexity Low_complexity 1 28 0 309 360 33 93 chr3 72670 73003 -217964155 + L2 LINE L2 2960 3272 0 249 250 104 0 chr3 73369 73465 -217963693 + MLT1I LTR MaLR 42 147 -262 390 42 0 0 chr3 74851 74899 -217962259 + (TG)n Simple_repeat Simple_repeat 1 48 0 1636 259 75 19 chr3 74984 75516 -217961642 + MLT1F1 LTR MaLR 3 564 -3 232 241 96 24 chr3 75529 75612 -217961546 - MIR SINE MIR -57 205 117 304 320 109 57 chr3 75658 76136 -217961022 - MLT1J LTR MaLR -6 505 3 287 324 150 19 chr3 77260 77473 -217959685 + HAL1 LINE L1 1684 1924 -583 287 240 58 58 chr3 77786 77940 -217959218 + HAL1b LINE L1 746 899 -449 274 328 44 59 chr3 78088 78223 -217958935 + L2 LINE L2 2880 3015 -298 1389 41 6 0 chr3 78223 78392 -217958766 - L1PA3 LINE L1 -1 6154 5985 274 328 44 59 chr3 78392 78597 -217958561 + L2 LINE L2 3015 3215 -98 24 0 0 0 chr3 78650 78674 -217958484 + AT_rich Low_complexity Low_complexity 1 24 0 1899 145 92 3 chr3 78703 79061 -217958097 + MLT1B LTR MaLR 1 390 0 222 37 0 0 chr3 79173 79200 -217957958 + (A)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr3 80098 80120 -217957038 + AT_rich Low_complexity Low_complexity 1 22 0 2484 144 64 7 chr3 80362 80798 -217956360 + LOR1b LTR ERV1 1 461 0 362 368 123 19 chr3 81004 81420 -217955738 + L2 LINE L2 2264 2722 -592 209 125 0 42 chr3 81442 81490 -217955668 + (TATG)n Simple_repeat Simple_repeat 3 48 0 229 342 26 0 chr3 82370 82446 -217954712 + L2 LINE L2 2993 3070 -202 225 341 49 0 chr3 82560 82642 -217954516 + L2 LINE L2 3227 3312 -1 364 230 34 32 chr3 82738 82846 -217954312 - MLT1H LTR MaLR 0 549 433 622 240 27 68 chr3 82938 83159 -217953999 - MLT1H LTR MaLR -243 306 95 1712 227 55 49 chr3 84422 84915 -217952243 + MLT1D LTR MaLR 5 500 -5 22 35 0 0 chr3 84972 85001 -217952157 + AT_rich Low_complexity Low_complexity 1 29 0 551 183 24 0 chr3 85051 85177 -217951981 - L1MC4 LINE L1 0 8042 7914 282 263 13 13 chr3 85336 85412 -217951746 - MER5C DNA MER1_type -248 76 1 953 112 149 0 chr3 85449 85610 -217951548 - MSTA LTR MaLR 0 428 244 424 167 42 0 chr3 85605 85677 -217951481 - MSTA LTR MaLR -353 75 1 * 232 309 85 0 chr3 85805 85899 -217951259 + L2 LINE L2 3200 3301 -12 2256 118 3 0 chr3 87916 88222 -217948936 - AluSq SINE Alu -6 307 1 513 280 60 30 chr3 88732 88964 -217948194 - MIR SINE MIR -8 254 16 180 250 0 0 chr3 89816 89852 -217947306 + MIR SINE MIR 226 261 -1 484 252 109 7 chr3 90374 90521 -217946637 + MIR SINE MIR 15 176 -86 240 296 0 37 chr3 91025 91106 -217946052 + MIR SINE MIR 180 257 -5 206 241 0 0 chr3 91132 91186 -217945972 + (TA)n Simple_repeat Simple_repeat 2 55 0 2273 77 0 10 chr3 91788 92108 -217945050 - AluY SINE Alu 0 311 1 26 30 0 0 chr3 92347 92380 -217944778 + AT_rich Low_complexity Low_complexity 1 33 0 345 47 0 0 chr3 92521 92564 -217944594 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 23 33 0 0 chr3 92735 92765 -217944393 + AT_rich Low_complexity Low_complexity 1 30 0 17898 43 5 3 chr3 93757 95986 -217941172 - L1P LINE L1 -3386 2760 529 24 0 0 0 chr3 96158 96182 -217940976 + AT_rich Low_complexity Low_complexity 1 24 0 203 273 0 18 chr3 97925 97980 -217939178 - L2 LINE L2 -9 3263 3210 2221 92 0 32 chr3 98954 99269 -217937889 - AluSx SINE Alu -7 305 1 849 105 7 14 chr3 100196 100339 -217936819 - L1PA13 LINE L1 0 6163 6022 388 352 54 37 chr3 101406 101758 -217935400 + L2 LINE L2 2312 2669 -645 2899 236 50 4 chr3 101854 102570 -217934588 + L1MD2 LINE L1 5390 6138 -221 271 260 39 0 chr3 102590 102667 -217934491 + L1MD3 LINE L1 7786 7865 -130 435 332 143 28 chr3 104004 104306 -217932852 + L2 LINE L2 2737 3070 -243 742 254 55 15 chr3 104317 104518 -217932640 - MER63A DNA MER1_type -1 209 1 307 313 0 0 chr3 104644 104724 -217932434 + L2 LINE L2 3234 3313 0 247 229 184 23 chr3 107058 107277 -217929881 - Charlie7 DNA MER1_type 0 2612 6 180 152 0 0 chr3 107710 107743 -217929415 + (TTA)n Simple_repeat Simple_repeat 2 34 0 872 283 14 0 chr3 107803 108022 -217929136 - MER58A DNA MER1_type 0 224 3 1735 178 23 26 chr3 108101 108449 -217928709 + MER7A DNA MER2_type 1 345 -1 1255 190 107 33 chr3 108592 108929 -217928229 + MLT1A1 LTR MaLR 4 365 0 46 54 0 0 chr3 109507 109581 -217927577 + AT_rich Low_complexity Low_complexity 1 74 0 449 350 31 20 chr3 110163 110417 -217926741 + MLT1H1 LTR MaLR 1 257 -298 22 80 0 0 chr3 110782 110832 -217926326 + AT_rich Low_complexity Low_complexity 1 50 0 359 219 109 8 chr3 111849 111977 -217925181 + MER103 DNA DNA 11 151 -15 221 376 12 0 chr3 112011 112096 -217925062 + L2 LINE L2 3224 3309 -4 428 341 18 66 chr3 112597 112823 -217924335 - MIR SINE MIR -30 232 18 1128 275 28 19 chr3 113308 113668 -217923490 - L2 LINE L2 -9 3304 2942 700 287 37 0 chr3 113769 113957 -217923201 - MER58A DNA MER1_type 0 224 30 217 267 0 0 chr3 113970 114015 -217923143 - L2 LINE L2 -514 2800 2756 652 286 123 62 chr3 114023 114537 -217922621 + MLT1H1 LTR MaLR 4 548 -19 1634 306 114 13 chr3 114545 115239 -217921919 - L2 LINE L2 -548 2766 2003 2137 150 28 11 chr3 115468 115829 -217921329 + THE1C LTR MaLR 9 375 0 21 0 0 0 chr3 116434 116455 -217920703 + AT_rich Low_complexity Low_complexity 1 21 0 557 204 55 0 chr3 116915 117096 -217920062 - L1MCa LINE L1 -2889 3537 3347 6291 157 7 26 chr3 117102 119323 -217917835 - L1PB1 LINE L1 0 6151 3974 694 221 21 5 chr3 119298 119488 -217917670 - L1MCa LINE L1 -3092 3334 3142 * 2300 202 48 20 chr3 119502 120351 -217916807 - L1MCa LINE L1 -3495 2931 2033 465 120 100 0 chr3 120446 120546 -217916612 - L1MCa LINE L1 -4384 2042 1933 325 393 34 11 chr3 120572 120750 -217916408 + L3 LINE CR1 1331 1512 -65 232 247 82 0 chr3 122741 122826 -217914332 + L1ME4a LINE L1 5844 5935 -186 21 36 0 0 chr3 124651 124679 -217912479 + AT_rich Low_complexity Low_complexity 1 28 0 318 319 86 17 chr3 126863 127095 -217910063 - L1MC/D LINE L1 -2036 5772 5525 187 318 0 0 chr3 127118 127162 -217909996 - MIR SINE MIR -203 59 16 196 287 103 46 chr3 127286 127373 -217909785 + MIR SINE MIR 11 102 -160 2051 124 89 3 chr3 127392 127730 -217909428 - THE1C LTR MaLR -8 367 1 237 67 0 0 chr3 128218 128248 -217908910 + LTR6A LTR ERV1 73 102 -462 22 0 0 0 chr3 129147 129169 -217907989 + AT_rich Low_complexity Low_complexity 1 22 0 1800 158 51 67 chr3 129355 129746 -217907412 + MLT2D LTR ERVL 1 534 -20 257 196 0 0 chr3 129771 129822 -217907336 + MLT2C1 LTR ERVL 347 397 0 2420 54 3 0 chr3 129982 130278 -217906880 + AluY SINE Alu 1 297 -14 2911 76 76 2 chr3 130444 130866 -217906292 + MLT2A2 LTR ERVL 1 453 0 474 60 90 0 chr3 130869 131003 -217906155 + (TA)n Simple_repeat Simple_repeat 2 147 0 1201 179 35 16 chr3 131345 131602 -217905556 + L1PA7 LINE L1 5891 6152 -2 1460 245 78 21 chr3 132146 132583 -217904575 + MLT1C LTR MaLR 6 467 0 766 235 131 40 chr3 132829 133250 -217903908 + LTR37B LTR ERV1 1 459 -9 729 227 0 6 chr3 133264 133427 -217903731 - FRAM SINE Alu -23 153 1 205 97 16 81 chr3 133809 133871 -217903287 + (TTATA)n Simple_repeat Simple_repeat 1 58 0 207 69 0 0 chr3 134083 134112 -217903046 + (TG)n Simple_repeat Simple_repeat 2 30 0 209 297 193 28 chr3 134223 134368 -217902790 - MIR SINE MIR -73 189 21 349 303 9 9 chr3 134519 134628 -217902530 + MIR3 SINE MIR 54 162 -46 1279 218 49 35 chr3 134726 135153 -217902005 - HsTC2 DNA Tc2 -11 1887 1279 351 0 0 0 chr3 136176 136215 -217900943 + (CA)n Simple_repeat Simple_repeat 2 40 0 258 32 0 0 chr3 136214 136245 -217900913 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 927 233 43 9 chr3 136288 136520 -217900638 + MIR SINE MIR 1 240 -22 929 165 19 19 chr3 136555 136767 -217900391 - L1 LINE L1 -823 5323 5112 4760 169 25 6 chr3 136772 137670 -217899488 + L1MA8 LINE L1 5364 6278 -13 273 98 0 0 chr3 137683 137724 -217899434 + (CA)n Simple_repeat Simple_repeat 2 42 0 317 226 108 0 chr3 138823 138916 -217898242 + MER103 DNA DNA 57 159 -7 272 292 124 0 chr3 139576 139689 -217897469 + MER117 DNA MER1_type 6 132 -65 278 323 46 8 chr3 139754 139881 -217897277 - MIR SINE MIR -48 160 29 2343 83 0 0 chr3 139904 140205 -217896953 + AluSc SINE Alu 3 303 -6 2397 71 0 3 chr3 140831 141141 -217896017 + AluY SINE Alu 1 309 -2 228 315 77 49 chr3 141445 141588 -217895570 - MIR3 SINE MIR -4 204 58 685 259 129 9 chr3 143029 143261 -217893897 + MIR SINE MIR 2 261 -1 639 293 122 39 chr3 145131 145466 -217891692 - MLT1I LTR MaLR -5 404 42 234 204 0 19 chr3 145568 145622 -217891536 + (CA)n Simple_repeat Simple_repeat 2 54 0 276 100 0 0 chr3 145622 145662 -217891496 + (CCA)n Simple_repeat Simple_repeat 2 41 0 2116 249 42 41 chr3 145874 146698 -217890460 + L1MD2 LINE L1 3750 4574 -1572 893 216 0 39 chr3 146721 146953 -217890205 - AluJo SINE Alu -6 306 84 757 158 8 0 chr3 147056 147176 -217889982 - FLAM_C SINE Alu -22 121 1 331 277 52 78 chr3 147214 147445 -217889713 + L1MD2 LINE L1 4579 4803 -1343 24 85 0 0 chr3 147462 147521 -217889637 + AT_rich Low_complexity Low_complexity 1 59 0 3580 238 44 32 chr3 147526 148976 -217888182 + L1MD2 LINE L1 4793 6355 -4 * 5252 188 27 15 chr3 148973 149104 -217888054 + L1MA8 LINE L1 4195 4323 -1968 1910 132 3 56 chr3 149104 149423 -217887735 - AluSc SINE Alu -5 304 3 5252 188 27 15 chr3 149423 150165 -217886993 + L1MA8 LINE L1 4323 5055 -1236 2184 165 30 37 chr3 150165 150625 -217886533 + MSTB2 LTR MaLR 1 457 0 5252 188 27 15 chr3 150625 151820 -217885338 + L1MA8 LINE L1 5055 6291 0 22 0 0 0 chr3 152507 152529 -217884629 + AT_rich Low_complexity Low_complexity 1 22 0 200 327 0 0 chr3 153770 153825 -217883333 - MIR SINE MIR -150 112 58 366 303 53 53 chr3 154863 155051 -217882107 + L2 LINE L2 2584 2771 -543 3923 150 34 4 chr3 155323 156036 -217881122 - L1MA4 LINE L1 -6 6294 5561 322 287 60 47 chr3 156495 156645 -217880513 + L2 LINE L2 3162 3313 0 423 265 61 30 chr3 156752 156884 -217880274 - LTR16C LTR ERVL 0 491 356 1706 112 4 7 chr3 157614 157891 -217879267 - L1MA5A LINE L1 -1 6296 6021 187 296 37 19 chr3 158215 158269 -217878889 + L2 LINE L2 3134 3188 -84 354 322 22 0 chr3 159343 159433 -217877725 + MER5A DNA MER1_type 10 101 -88 525 366 50 9 chr3 159520 159837 -217877321 + MLT1J LTR MaLR 3 332 -179 25 0 0 0 chr3 161696 161721 -217875437 + AT_rich Low_complexity Low_complexity 1 25 0 31 0 0 24 chr3 162200 162229 -217874929 + AT_rich Low_complexity Low_complexity 1 30 -11 1184 15 0 0 chr3 162229 162366 -217874792 - L1PA4 LINE L1 -8 6147 6011 31 0 0 24 chr3 162366 162378 -217874780 + AT_rich Low_complexity Low_complexity 30 41 0 239 325 38 12 chr3 163056 163136 -217874022 + MIR SINE MIR 34 115 -147 285 29 0 0 chr3 163174 163208 -217873950 + (GA)n Simple_repeat Simple_repeat 1 34 0 2121 305 43 46 chr3 163216 164961 -217872197 - L1M4 LINE L1 -888 5258 3520 608 241 91 37 chr3 165300 165541 -217871617 + Charlie5 DNA MER1_type 2234 2487 -125 246 301 0 0 chr3 165567 165640 -217871518 - L1M4 LINE L1 -2056 4090 4018 721 359 31 29 chr3 165654 166234 -217870924 + L1PA13 LINE L1 788 1368 -6206 471 300 52 14 chr3 166218 166492 -217870666 + L1PA13 LINE L1 2069 2303 -5271 * 4287 231 35 18 chr3 166730 167947 -217869211 + L1PA13 LINE L1 2188 3439 -4145 2076 143 0 0 chr3 167947 168248 -217868910 + AluSx SINE Alu 3 303 -9 4287 231 35 18 chr3 168248 168431 -217868727 + L1PA13 LINE L1 3439 3617 -3967 24 0 0 0 chr3 168631 168655 -217868503 + AT_rich Low_complexity Low_complexity 1 24 0 2896 252 50 14 chr3 168793 169806 -217867352 + L1PA13 LINE L1 3599 4648 -2936 * 16282 191 32 37 chr3 169799 173484 -217863674 - L1PB1 LINE L1 0 6867 3167 7107 6 0 0 chr3 173484 174278 -217862880 + L1PA2 LINE L1 5344 6138 -17 16282 191 32 37 chr3 174278 176646 -217860512 - L1PB1 LINE L1 -3700 3167 993 273 29 0 0 chr3 176646 176680 -217860478 + (TTTG)n Simple_repeat Simple_repeat 4 37 0 16282 191 32 37 chr3 176680 177668 -217859490 - L1PB1 LINE L1 -5874 993 2 246 356 130 14 chr3 177724 177940 -217859218 + L2 LINE L2 2830 3070 -202 271 311 75 112 chr3 178536 179106 -217858052 + LTR67 LTR ERVL 4 552 -5 445 305 41 35 chr3 179353 179550 -217857608 + MIR SINE MIR 65 262 0 230 363 50 45 chr3 180382 180561 -217856597 - L2 LINE L2 -522 2792 2613 22 0 0 0 chr3 180950 180972 -217856186 + AT_rich Low_complexity Low_complexity 1 22 0 2303 123 43 6 chr3 181106 181457 -217855701 + THE1B LTR MaLR 1 364 0 1345 215 49 89 chr3 182234 182760 -217854398 + MLT1D LTR MaLR 1 505 0 2166 109 3 0 chr3 184227 184521 -217852637 - AluSx SINE Alu -17 295 1 199 298 229 0 chr3 184651 184782 -217852376 - MIR SINE MIR -53 209 49 1039 105 62 0 chr3 185506 185668 -217851490 - L1PA16 LINE L1 -16 6150 5979 371 221 171 57 chr3 185769 185909 -217851249 - MER5B DNA MER1_type -22 156 1 348 228 38 13 chr3 185979 186058 -217851100 - MER94 DNA DNA -53 81 1 319 317 14 62 chr3 186060 186205 -217850953 - MER5A DNA MER1_type -24 165 28 3897 189 40 0 chr3 186222 187003 -217850155 - L1MC1 LINE L1 0 6333 5522 229 126 5 7 chr3 237003 237194 -217799964 + AluSq SINE Alu 66 295 -4 1821 142 7 23 chr3 237478 237780 -217799378 - AluSx SINE Alu -15 297 1 1879 171 97 8 chr3 238028 238419 -217798739 + MSTB LTR MaLR 1 426 0 272 89 0 22 chr3 239529 239574 -217797584 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 22 0 0 0 chr3 239938 239960 -217797198 + AT_rich Low_complexity Low_complexity 1 22 0 1256 140 0 0 chr3 240036 240215 -217796943 - AluSg/x SINE Alu -2 310 132 270 294 76 11 chr3 240315 240407 -217796751 - L2 LINE L2 0 3272 3175 1799 252 21 14 chr3 240574 241006 -217796152 - MER82 DNA MER2_type -7 646 212 428 82 0 0 chr3 241007 241068 -217796090 + Alu SINE Alu 241 301 -9 900 215 19 10 chr3 241303 241512 -217795646 - MER82 DNA MER2_type -433 220 10 260 77 0 0 chr3 241572 241611 -217795547 + MADE1 DNA Mariner 42 80 0 2252 106 0 7 chr3 242932 243235 -217793923 + AluSx SINE Alu 1 301 -11 374 308 43 0 chr3 243643 243760 -217793398 - L2 LINE L2 -7 3265 3144 35 54 0 0 chr3 243760 243816 -217793342 + AT_rich Low_complexity Low_complexity 1 56 0 3630 99 25 2 chr3 243848 244364 -217792794 + MER41B LTR ERV1 1 528 -107 2011 154 0 0 chr3 244371 244669 -217792489 - AluSx SINE Alu -12 300 3 277 337 70 30 chr3 244934 245364 -217791794 + L1ME LINE L1 5370 5816 -346 243 0 0 0 chr3 246261 246288 -217790870 + (T)n Simple_repeat Simple_repeat 1 27 0 264 306 72 0 chr3 246762 246873 -217790285 - L2 LINE L2 -6 3307 3189 736 225 7 7 chr3 247088 247264 -217789894 - AluJb SINE Alu 0 310 135 1717 190 40 54 chr3 247266 247346 -217789812 - L1MB7 LINE L1 -10 6174 6094 718 217 0 0 chr3 247346 247475 -217789683 - FLAM_A SINE Alu -1 132 4 1717 190 40 54 chr3 247475 247873 -217789285 - L1MB7 LINE L1 -90 6094 5703 403 327 92 9 chr3 249062 249279 -217787879 - MIR SINE MIR -3 259 25 272 400 22 22 chr3 251882 252017 -217785141 - L2 LINE L2 -4 3268 3134 195 322 164 0 chr3 252257 252409 -217784749 - L2 LINE L2 -400 2914 2738 26474 129 9 5 chr3 253084 258342 -217778816 - L1PA7 LINE L1 -1 6468 1189 264 224 35 0 chr3 258489 258547 -217778611 - AluJ/FLAM SINE Alu -242 60 1 1198 130 0 0 chr3 258707 258884 -217778274 + AluSg/x SINE Alu 131 307 -3 216 381 41 41 chr3 260662 260809 -217776349 - L2 LINE L2 -9 3263 3117 393 222 11 11 chr3 260966 261056 -217776102 - MLT1H LTR MaLR -387 162 73 330 247 31 31 chr3 261105 261202 -217775956 + MER5B DNA MER1_type 82 178 0 737 261 6 6 chr3 261209 261389 -217775769 - MER5A DNA MER1_type 0 189 10 259 273 16 62 chr3 261889 262017 -217775141 + LTR33 LTR ERVL 1 122 -399 722 164 0 210 chr3 262026 262108 -217775050 + MER5A DNA MER1_type 2 3 -186 897 143 0 8 chr3 262108 262241 -217774917 + FLAM_C SINE Alu 2 133 0 722 164 0 210 chr3 262241 262396 -217774762 + MER5A DNA MER1_type 3 189 0 686 307 77 25 chr3 262401 262766 -217774392 + LTR33 LTR ERVL 128 511 -10 201 94 0 0 chr3 263353 263385 -217773773 + (TTTTTA)n Simple_repeat Simple_repeat 4 35 0 1723 155 14 47 chr3 263404 263700 -217773458 - AluJb SINE Alu -26 286 1 1496 207 18 3 chr3 263945 264230 -217772928 + AluJb SINE Alu 2 290 -22 568 187 90 15 chr3 264587 264721 -217772437 - L1MB2 LINE L1 -3 6168 6025 339 255 98 0 chr3 265523 265625 -217771533 + MIR SINE MIR 15 126 -136 234 329 40 79 chr3 266302 266530 -217770628 + L2 LINE L2 3006 3224 -48 374 353 68 10 chr3 267239 267446 -217769712 - MIR SINE MIR -19 243 25 212 317 20 20 chr3 268086 268187 -217768971 - MER5B DNA MER1_type 0 178 78 1621 274 48 25 chr3 268224 268778 -217768380 - MLT1F1 LTR MaLR 0 567 1 280 271 51 25 chr3 269754 269872 -217767286 - Charlie8 DNA MER1_type -1929 488 368 239 111 0 22 chr3 270003 270048 -217767110 + (TTCTCC)n Simple_repeat Simple_repeat 4 47 0 1704 173 4 4 chr3 270052 270329 -217766829 - AluJo SINE Alu -34 278 2 232 353 105 15 chr3 270665 270798 -217766360 + L2 LINE L2 3128 3272 0 1005 280 53 51 chr3 270955 271730 -217765428 - L2 LINE L2 0 3313 2542 435 363 97 0 chr3 271915 272193 -217764965 + L2 LINE L2 2658 2962 -352 259 352 11 11 chr3 272446 272534 -217764624 + L2 LINE L2 3190 3277 -36 366 74 0 0 chr3 272539 272593 -217764565 + (TGGA)n Simple_repeat Simple_repeat 1 54 0 1928 160 0 16 chr3 274205 274512 -217762646 - AluSx SINE Alu -10 302 1 257 262 0 0 chr3 274627 274689 -217762469 + (CA)n Simple_repeat Simple_repeat 1 62 0 2171 162 7 55 chr3 275305 275597 -217761561 - Tigger2a DNA MER2_type -2274 434 170 1886 147 0 42 chr3 275597 275910 -217761248 - AluSx SINE Alu -12 300 1 2171 162 7 55 chr3 275910 276073 -217761085 - Tigger2a DNA MER2_type -2538 170 1 390 347 17 6 chr3 276925 277101 -217760057 + MIR SINE MIR 2 179 -83 285 260 90 0 chr3 277689 277789 -217759369 + MIR SINE MIR 128 236 -26 39 0 0 0 chr3 277954 277993 -217759165 + AT_rich Low_complexity Low_complexity 1 39 0 283 271 59 42 chr3 278038 278156 -217759002 + MLT1K LTR MaLR 456 575 -13 1418 99 0 0 chr3 278309 278501 -217758657 - AluY SINE Alu -14 297 106 669 25 0 0 chr3 278501 278580 -217758578 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 2095 110 7 0 chr3 278580 278862 -217758296 - AluSq SINE Alu -29 284 1 470 234 11 4 chr3 279858 280135 -217757023 + (TA)n Simple_repeat Simple_repeat 1 279 0 1065 180 11 21 chr3 282870 283059 -217754099 + MER2 DNA MER2_type 1 187 -158 2424 76 0 0 chr3 283059 283360 -217753798 + AluSc SINE Alu 1 301 -8 333 269 26 0 chr3 283375 283453 -217753705 + MER2 DNA MER2_type 266 345 0 482 288 43 6 chr3 283786 283949 -217753209 + MIR SINE MIR 79 247 -15 1752 182 18 3 chr3 284185 284525 -217752633 - MER7A DNA MER2_type 0 346 4 2149 155 13 28 chr3 284905 285299 -217751859 + MLT1B LTR MaLR 1 388 -2 706 253 75 11 chr3 285694 285880 -217751278 - MLT1J2 LTR MaLR -214 236 39 930 243 13 26 chr3 286086 286312 -217750846 - MER58A DNA MER1_type 0 224 2 1972 82 0 70 chr3 286426 286697 -217750461 + L1PA10 LINE L1 5864 6113 -55 1710 141 21 35 chr3 286697 287000 -217750158 + AluSg SINE Alu 1 299 0 1972 82 0 70 chr3 287000 287043 -217750115 + L1PA10 LINE L1 6113 6157 -11 210 37 0 0 chr3 287116 287143 -217750015 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 306 300 40 72 chr3 287509 287759 -217749399 + MIR SINE MIR 21 262 0 236 320 119 21 chr3 287882 288076 -217749082 + L2 LINE L2 1966 2178 -1136 188 200 89 0 chr3 288480 288525 -217748633 - L2 LINE L2 0 3313 3265 529 338 39 13 chr3 288624 288855 -217748303 + MIR SINE MIR 25 261 -1 2231 85 10 7 chr3 289161 289466 -217747692 - AluY SINE Alu -5 306 1 21 36 0 0 chr3 292118 292146 -217745012 + AT_rich Low_complexity Low_complexity 1 28 0 1905 288 69 34 chr3 293231 293511 -217743647 - L1ME LINE L1 -4383 1697 1428 2445 51 0 0 chr3 293511 293804 -217743354 + AluY SINE Alu 2 294 -17 1905 288 69 34 chr3 293804 294737 -217742421 - L1ME LINE L1 -4652 1428 399 1829 207 14 8 chr3 294737 295100 -217742058 - MLT1A1 LTR MaLR 0 365 1 1905 288 69 34 chr3 295100 295447 -217741711 - L1ME LINE L1 -5681 399 66 1909 157 0 0 chr3 295447 295753 -217741405 - AluSx SINE Alu 0 308 3 270 190 0 38 chr3 295902 295981 -217741177 - MER116 DNA Mariner 0 80 5 3770 143 17 6 chr3 296505 297140 -217740018 - L1PA16 LINE L1 -9 6157 5516 386 335 37 31 chr3 297900 298091 -217739067 - MER117 DNA MER1_type 0 197 6 528 350 133 16 chr3 298320 298703 -217738455 - MLT1K LTR MaLR -151 437 10 354 321 108 71 chr3 298870 299150 -217738008 - MLT1J LTR MaLR -120 326 33 1625 127 19 16 chr3 299150 299457 -217737701 + AluY SINE Alu 1 308 -3 354 321 108 71 chr3 299457 299472 -217737686 - MLT1J LTR MaLR -413 33 20 21 0 0 0 chr3 299702 299723 -217737435 + AT_rich Low_complexity Low_complexity 1 21 0 261 330 113 19 chr3 299799 299905 -217737253 + MIR3 SINE MIR 66 181 -27 29 0 0 0 chr3 300555 300584 -217736574 + AT_rich Low_complexity Low_complexity 1 29 0 363 121 0 0 chr3 301438 301496 -217735662 + (TTCC)n Simple_repeat Simple_repeat 1 58 0 307 284 23 11 chr3 301773 301861 -217735297 + L2 LINE L2 3223 3311 -2 426 273 52 32 chr3 305019 305173 -217731985 + MIR SINE MIR 49 205 -57 27 49 0 0 chr3 306143 306184 -217730974 + AT_rich Low_complexity Low_complexity 1 41 0 270 116 0 0 chr3 308044 308087 -217729071 + (TG)n Simple_repeat Simple_repeat 1 43 0 441 297 24 53 chr3 308577 308786 -217728372 + MIR SINE MIR 12 214 -48 442 257 88 70 chr3 309014 309185 -217727973 + MER5B DNA MER1_type 2 175 -3 194 266 13 76 chr3 309435 309514 -217727644 - MIR SINE MIR -112 150 77 358 275 70 0 chr3 309788 309930 -217727228 + Charlie8 DNA MER1_type 38 189 -2228 547 281 119 0 chr3 310051 310286 -217726872 - LTR33 LTR ERVL -37 484 222 290 270 22 11 chr3 310342 310431 -217726727 - LTR33 LTR ERVL -405 116 27 195 294 73 46 chr3 311413 311522 -217725636 - MIR SINE MIR -56 206 95 1755 184 0 34 chr3 311647 311968 -217725190 - AluJo SINE Alu -2 310 1 255 173 0 0 chr3 312182 312234 -217724924 + (TG)n Simple_repeat Simple_repeat 1 52 0 349 270 67 79 chr3 312378 312554 -217724604 - MIR SINE MIR -77 185 12 2218 94 14 0 chr3 312741 313027 -217724131 + AluSx SINE Alu 2 291 -21 1086 137 29 78 chr3 313037 313241 -217723917 + AluJo SINE Alu 36 229 -83 296 252 19 37 chr3 314667 314774 -217722384 + MIR SINE MIR 112 216 -46 27 0 0 0 chr3 315976 316003 -217721155 + AT_rich Low_complexity Low_complexity 1 27 0 1524 84 14 0 chr3 316120 316333 -217720825 - L1PA5 LINE L1 0 6154 5939 877 248 40 43 chr3 316783 317130 -217720028 - MLT1H1 LTR MaLR -2 553 208 689 299 51 0 chr3 319427 319781 -217717377 + MER113 DNA MER1_type? 31 402 -119 243 0 0 0 chr3 321512 321539 -217715619 + (CA)n Simple_repeat Simple_repeat 1 27 0 2878 153 70 23 chr3 321618 322233 -217714925 + L1MA6 LINE L1 5652 6295 -5 350 303 212 32 chr3 323874 324376 -217712782 - L2 LINE L2 0 3313 2703 248 246 40 48 chr3 325317 325347 -217711811 + L1M3 LINE L1 5318 5347 -824 4670 97 17 38 chr3 325347 325420 -217711738 + L1PA13 LINE L1 5419 5492 -671 2266 71 7 23 chr3 325420 325728 -217711430 + AluY SINE Alu 1 303 -8 4670 97 17 38 chr3 325728 326415 -217710743 + L1PA13 LINE L1 5492 6163 0 248 246 40 48 chr3 326415 326510 -217710648 + L1M3 LINE L1 5347 5442 -729 900 235 145 9 chr3 326519 326851 -217710307 + L1ME1 LINE L1 5782 6158 -8 958 154 11 69 chr3 326877 326966 -217710192 + FAM SINE Alu 1 77 -244 1111 94 5 80 chr3 326966 327167 -217709991 + MER30B DNA MER1_type 1 186 -4 958 154 11 69 chr3 327167 327252 -217709906 + FAM SINE Alu 77 165 -20 344 344 50 17 chr3 327257 327437 -217709721 + L1ME LINE L1 5431 5616 -505 2401 128 25 32 chr3 327438 327869 -217709289 + MER4E LTR ERV1 344 771 -8 826 206 110 10 chr3 328667 328876 -217708282 - MLT1D LTR MaLR 0 505 276 1001 227 108 31 chr3 328876 329314 -217707844 - LTR29 LTR ERV1 0 609 160 258 284 69 9 chr3 329316 329432 -217707726 - MER34 LTR ERV1 -409 133 11 792 233 26 48 chr3 329445 329715 -217707443 - MLT1D LTR MaLR -229 276 13 208 250 29 15 chr3 330014 330082 -217707076 + MIR SINE MIR 130 198 -64 2168 174 40 124 chr3 330157 330897 -217706261 - LTR8A LTR ERV1 0 727 51 2022 183 53 12 chr3 330897 331308 -217705850 + MSTA LTR MaLR 1 428 0 2168 174 40 124 chr3 331308 331325 -217705833 - LTR8A LTR ERV1 -676 51 34 1961 135 7 0 chr3 331408 331696 -217705462 + AluSx SINE Alu 1 290 -22 280 322 34 34 chr3 331750 331899 -217705259 - L2 LINE L2 -1 3312 3164 2361 110 0 0 chr3 332282 332582 -217704576 + AluSx SINE Alu 1 300 -12 286 170 0 0 chr3 332600 332653 -217704505 + L1M4 LINE L1 2315 2367 -3779 703 270 47 9 chr3 332937 333148 -217704010 - MER20 DNA MER1_type 0 219 1 400 77 31 0 chr3 333198 333263 -217703895 + (TG)n Simple_repeat Simple_repeat 2 68 0 189 0 0 0 chr3 334848 334869 -217702289 + (GAAAA)n Simple_repeat Simple_repeat 5 25 0 800 243 66 22 chr3 336999 337225 -217699933 - MIR SINE MIR -5 257 22 2351 94 0 0 chr3 337225 337534 -217699624 - AluY SINE Alu -2 309 1 184 267 0 67 chr3 337923 337968 -217699190 - L2 LINE L2 -67 3205 3164 33 56 0 0 chr3 338017 338071 -217699087 + AT_rich Low_complexity Low_complexity 1 54 0 217 250 33 0 chr3 338183 338243 -217698915 + MIR SINE MIR 174 235 -27 21 0 0 0 chr3 338280 338301 -217698857 + AT_rich Low_complexity Low_complexity 1 21 0 290 297 68 27 chr3 338909 339057 -217698101 + MIR SINE MIR 36 189 -73 182 338 70 0 chr3 339062 339133 -217698025 - L2 LINE L2 -35 3237 3162 339 325 88 53 chr3 340039 340322 -217696836 - L2 LINE L2 -399 2915 2623 518 304 196 22 chr3 340982 341344 -217695814 + L2 LINE L2 2887 3311 -2 1067 124 0 0 chr3 342696 342841 -217694317 - FRAM SINE Alu -23 153 9 262 288 25 0 chr3 342856 342947 -217694211 - MIR SINE MIR -61 147 84 727 227 169 68 chr3 343049 343552 -217693606 + MLT1H1 LTR MaLR 2 555 0 1940 144 3 3 chr3 344316 344600 -217692558 + AluSq SINE Alu 1 284 -29 362 21 21 0 chr3 345562 345609 -217691549 + (TTTTA)n Simple_repeat Simple_repeat 1 48 0 1934 146 0 4 chr3 345609 345890 -217691268 - AluSx SINE Alu -32 280 1 657 294 89 5 chr3 348780 348994 -217688164 - MIR SINE MIR -17 245 14 185 255 0 43 chr3 349033 349080 -217688078 + L2 LINE L2 3217 3261 -11 414 330 40 30 chr3 351258 351558 -217685600 + MER102b DNA MER1_type 39 341 0 243 364 54 27 chr3 352492 352676 -217684482 - MIR3 SINE MIR -1 207 19 229 216 14 14 chr3 352761 352835 -217684323 + CT-rich Low_complexity Low_complexity 2 75 0 1988 135 4 0 chr3 353857 354158 -217683000 - AluSx SINE Alu 0 302 1 282 353 83 0 chr3 354226 354359 -217682799 - MER5A DNA MER1_type 0 189 46 358 255 167 36 chr3 354410 354602 -217682556 - L2 LINE L2 -69 3244 3028 422 177 0 10 chr3 354803 354899 -217682259 + (CA)n Simple_repeat Simple_repeat 1 95 0 1607 178 52 0 chr3 354921 355207 -217681951 + AluJb SINE Alu 1 301 -11 946 329 36 17 chr3 355288 355699 -217681459 + L3 LINE CR1 946 1364 -213 376 283 155 50 chr3 356268 356490 -217680668 + MER113 DNA MER1_type? 38 235 -286 2223 113 7 0 chr3 356490 356799 -217680359 + AluSx SINE Alu 1 311 -1 376 283 155 50 chr3 356799 357014 -217680144 + MER113 DNA MER1_type? 235 521 0 211 363 39 0 chr3 357307 357409 -217679749 - L2 LINE L2 0 3272 3167 826 230 52 28 chr3 357466 357679 -217679479 - MER20 DNA MER1_type 0 219 2 1160 196 57 75 chr3 359195 359567 -217677591 + MLT1A1 LTR MaLR 1 365 0 188 258 61 15 chr3 359568 359634 -217677524 + L2 LINE L2 2790 2858 -456 636 255 99 28 chr3 359889 360101 -217677057 - LTR16A LTR ERVL -208 242 16 231 286 254 8 chr3 360111 360237 -217676921 + MIR SINE MIR 96 252 -10 371 284 76 56 chr3 360333 360530 -217676628 - L2 LINE L2 0 3313 3113 392 297 77 32 chr3 361000 361155 -217676003 - MIR SINE MIR -89 173 12 360 0 0 0 chr3 361740 361780 -217675378 + (TA)n Simple_repeat Simple_repeat 2 41 0 524 248 16 23 chr3 362514 362643 -217674515 - MIR3 SINE MIR -7 201 74 298 364 43 7 chr3 362690 362830 -217674328 - MIR SINE MIR -96 166 22 369 309 119 66 chr3 362997 363240 -217673918 + L2 LINE L2 3014 3269 -3 1110 248 22 101 chr3 363415 363898 -217673260 + MER34 LTR ERV1 1 432 -110 1751 159 11 0 chr3 363898 364168 -217672990 + AluJo SINE Alu 21 293 -19 1110 248 22 101 chr3 364168 364268 -217672890 + MER34 LTR ERV1 432 538 -4 783 172 30 24 chr3 365515 365684 -217671474 + L1MA10 LINE L1 6163 6332 -2 195 360 67 20 chr3 368690 368840 -217668318 - MIR SINE MIR -27 235 79 204 97 0 0 chr3 371444 371475 -217665683 + (TG)n Simple_repeat Simple_repeat 2 32 0 2304 71 0 0 chr3 371512 371828 -217665330 - AluY SINE Alu 0 316 1 195 129 0 0 chr3 371936 371967 -217665191 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 6036 140 14 5 chr3 373139 374524 -217662634 + L1PB1 LINE L1 4745 6143 -8 35 0 0 0 chr3 374524 374559 -217662599 + AT_rich Low_complexity Low_complexity 1 35 0 301 338 79 12 chr3 374710 374931 -217662227 + MIR SINE MIR 6 242 -20 2190 107 9 25 chr3 375184 375502 -217661656 - AluSq SINE Alu 0 313 1 304 393 61 9 chr3 376344 376573 -217660585 - MIR SINE MIR -8 254 14 1855 135 63 44 chr3 376697 377061 -217660097 - THE1C LTR MaLR -4 371 1 221 333 48 67 chr3 377110 377275 -217659883 + MIR3 SINE MIR 38 199 -9 207 183 100 17 chr3 377809 377869 -217659289 + L2 LINE L2 3208 3272 0 322 156 104 0 chr3 377871 377948 -217659210 + MIR SINE MIR 64 148 -114 602 198 39 82 chr3 378662 378844 -217658314 - MIR SINE MIR -11 251 78 1234 0 7 0 chr3 378989 379128 -217658030 + L1PA2 LINE L1 6003 6142 -13 213 39 0 0 chr3 379132 379158 -217658000 + (TAA)n Simple_repeat Simple_repeat 2 27 0 189 200 67 50 chr3 379302 379362 -217657796 - L2 LINE L2 -1 3312 3252 327 191 0 0 chr3 379900 379968 -217657190 + (CATA)n Simple_repeat Simple_repeat 2 69 0 533 261 72 26 chr3 380265 380571 -217656587 + L1ME4a LINE L1 5691 6010 -111 2275 120 3 0 chr3 382267 382576 -217654582 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr3 382888 382910 -217654248 + AT_rich Low_complexity Low_complexity 1 22 0 184 370 19 37 chr3 383477 383585 -217653573 - MIR SINE MIR -123 139 34 225 0 0 0 chr3 385640 385665 -217651493 + (TG)n Simple_repeat Simple_repeat 2 26 0 234 206 0 0 chr3 386126 386189 -217650969 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 215 204 0 0 chr3 387102 387146 -217650012 + (TG)n Simple_repeat Simple_repeat 2 45 0 259 320 33 40 chr3 387407 387557 -217649601 + L2 LINE L2 3164 3312 -1 1737 174 7 0 chr3 387611 387899 -217649259 - AluSx SINE Alu -22 290 1 823 132 0 76 chr3 387902 388046 -217649112 - AluSq/x SINE Alu -180 133 1 214 132 38 0 chr3 388088 388141 -217649017 + (TA)n Simple_repeat Simple_repeat 1 55 0 24 0 0 0 chr3 388141 388165 -217648993 + AT_rich Low_complexity Low_complexity 1 24 0 2058 105 10 27 chr3 388165 388460 -217648698 - AluSx SINE Alu -22 290 1 234 206 0 0 chr3 389668 389731 -217647427 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 225 0 0 0 chr3 390192 390217 -217646941 + (CA)n Simple_repeat Simple_repeat 2 26 0 184 370 19 37 chr3 392272 392380 -217644778 + MIR SINE MIR 34 139 -123 22 0 0 0 chr3 392947 392969 -217644189 + AT_rich Low_complexity Low_complexity 1 22 0 2275 120 3 0 chr3 393281 393590 -217643568 - AluSx SINE Alu -2 310 1 533 261 72 26 chr3 395287 395593 -217641565 - L1ME4a LINE L1 -111 6010 5691 327 191 0 0 chr3 395890 395958 -217641200 + (TATG)n Simple_repeat Simple_repeat 2 69 0 189 200 67 50 chr3 396496 396556 -217640602 + L2 LINE L2 3252 3312 -1 213 39 0 0 chr3 396700 396726 -217640432 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1234 0 7 0 chr3 396730 396869 -217640289 - L1PA2 LINE L1 -13 6142 6003 602 198 39 82 chr3 397014 397196 -217639962 + MIR SINE MIR 78 251 -11 322 156 104 0 chr3 397910 397987 -217639171 - MIR SINE MIR -114 148 64 207 183 100 17 chr3 397989 398049 -217639109 - L2 LINE L2 0 3272 3208 221 333 48 67 chr3 398583 398748 -217638410 - MIR3 SINE MIR -9 199 38 1855 135 63 44 chr3 398797 399161 -217637997 + THE1C LTR MaLR 1 371 -4 304 393 61 9 chr3 399285 399514 -217637644 + MIR SINE MIR 14 254 -8 2190 107 9 25 chr3 400356 400674 -217636484 + AluSq SINE Alu 1 313 0 301 338 79 12 chr3 400927 401148 -217636010 - MIR SINE MIR -20 242 6 35 0 0 0 chr3 401299 401334 -217635824 + AT_rich Low_complexity Low_complexity 1 35 0 6036 140 14 5 chr3 401334 402719 -217634439 - L1PB1 LINE L1 -8 6143 4745 195 129 0 0 chr3 403889 403920 -217633238 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 2305 71 0 0 chr3 404028 404344 -217632814 + AluY SINE Alu 1 316 0 204 97 0 0 chr3 404381 404412 -217632746 + (CA)n Simple_repeat Simple_repeat 2 32 0 195 360 67 20 chr3 407016 407166 -217629992 + MIR SINE MIR 79 235 -27 783 172 30 24 chr3 410172 410341 -217626817 - L1MA10 LINE L1 -2 6332 6163 1110 248 22 101 chr3 411588 411688 -217625470 - MER34 LTR ERV1 -4 538 432 1751 159 11 0 chr3 411688 411958 -217625200 - AluJo SINE Alu -19 293 21 1110 248 22 101 chr3 411958 412441 -217624717 - MER34 LTR ERV1 -110 432 1 369 309 119 66 chr3 412616 412859 -217624299 - L2 LINE L2 -3 3269 3014 298 364 43 7 chr3 413026 413166 -217623992 + MIR SINE MIR 22 166 -96 524 248 16 23 chr3 413213 413342 -217623816 + MIR3 SINE MIR 74 201 -7 360 0 0 0 chr3 414075 414115 -217623043 + (TA)n Simple_repeat Simple_repeat 2 41 0 392 297 77 32 chr3 414700 414855 -217622303 + MIR SINE MIR 12 173 -89 371 284 76 56 chr3 415325 415522 -217621636 + L2 LINE L2 3113 3313 0 231 286 254 8 chr3 415618 415744 -217621414 - MIR SINE MIR -10 252 96 636 255 99 28 chr3 415754 415966 -217621192 + LTR16A LTR ERVL 16 242 -208 188 258 61 15 chr3 416221 416287 -217620871 - L2 LINE L2 -456 2858 2790 1160 196 57 75 chr3 416288 416660 -217620498 - MLT1A1 LTR MaLR 0 365 1 826 230 52 28 chr3 418176 418389 -217618769 + MER20 DNA MER1_type 2 219 0 211 363 39 0 chr3 418446 418548 -217618610 + L2 LINE L2 3167 3272 0 376 283 155 50 chr3 418841 419056 -217618102 - MER113 DNA MER1_type? 0 521 330 2223 113 7 0 chr3 419056 419365 -217617793 - AluSx SINE Alu -1 311 1 376 283 155 50 chr3 419365 419587 -217617571 - MER113 DNA MER1_type? -191 330 38 946 329 36 17 chr3 420156 420567 -217616591 - L3 LINE CR1 -213 1364 946 1607 178 52 0 chr3 420648 420934 -217616224 - AluJb SINE Alu -11 301 1 422 177 0 10 chr3 420956 421052 -217616106 + (TG)n Simple_repeat Simple_repeat 1 95 0 352 267 168 31 chr3 421253 421444 -217615714 + L2 LINE L2 3028 3244 -69 282 353 83 0 chr3 421495 421628 -217615530 + MER5A DNA MER1_type 46 189 0 1989 135 4 0 chr3 421696 421997 -217615161 + AluSx SINE Alu 1 302 0 229 216 14 14 chr3 423019 423093 -217614065 + GA-rich Low_complexity Low_complexity 2 75 0 243 364 54 27 chr3 423178 423362 -217613796 + MIR3 SINE MIR 19 207 -1 414 330 40 30 chr3 424161 424461 -217612697 - MER102b DNA MER1_type 0 341 39 182 255 0 43 chr3 426640 426687 -217610471 - L2 LINE L2 -11 3261 3217 660 294 89 5 chr3 426726 426940 -217610218 + MIR SINE MIR 14 245 -17 1920 146 0 4 chr3 429830 430111 -217607047 + AluSx SINE Alu 1 280 -32 362 21 21 0 chr3 430111 430158 -217607000 + (TAAAA)n Simple_repeat Simple_repeat 1 48 0 1920 144 3 3 chr3 431120 431404 -217605754 - AluSq SINE Alu -29 284 1 735 237 163 62 chr3 432168 432671 -217604487 - MLT1H1 LTR MaLR 0 555 2 263 288 25 0 chr3 432773 432864 -217604294 + MIR SINE MIR 84 147 -61 1066 124 0 0 chr3 432879 433024 -217604134 + FRAM SINE Alu 9 153 -23 505 304 196 22 chr3 434376 434738 -217602420 - L2 LINE L2 -2 3311 2887 333 325 88 53 chr3 435398 435681 -217601477 + L2 LINE L2 2623 2915 -399 280 297 68 27 chr3 436663 436811 -217600347 - MIR SINE MIR -73 189 36 21 0 0 0 chr3 437419 437440 -217599718 + AT_rich Low_complexity Low_complexity 1 21 0 222 250 33 0 chr3 437477 437537 -217599621 - MIR SINE MIR -27 235 174 33 56 0 0 chr3 437649 437703 -217599455 + AT_rich Low_complexity Low_complexity 1 54 0 186 267 0 67 chr3 437752 437797 -217599361 + L2 LINE L2 3164 3205 -67 2336 94 0 0 chr3 438186 438495 -217598663 + AluY SINE Alu 1 309 -2 803 243 66 22 chr3 438495 438721 -217598437 + MIR SINE MIR 22 257 -5 189 0 0 0 chr3 440851 440872 -217596286 + (TTTTC)n Simple_repeat Simple_repeat 5 25 0 400 77 31 0 chr3 442457 442522 -217594636 + (CA)n Simple_repeat Simple_repeat 2 68 0 771 270 47 9 chr3 442572 442783 -217594375 + MER20 DNA MER1_type 1 219 0 931 282 78 54 chr3 443063 443138 -217594020 - L1MEc LINE L1 -3921 2475 2403 2318 113 0 0 chr3 443138 443438 -217593720 - AluSx SINE Alu -12 300 1 931 282 78 54 chr3 443438 444267 -217592891 - L1MEc LINE L1 -3993 2403 1549 527 221 29 0 chr3 444267 444371 -217592787 - U6 snRNA snRNA 0 107 1 201 147 0 0 chr3 445080 445114 -217592044 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 525 229 52 81 chr3 445228 445438 -217591720 - MER20 DNA MER1_type -15 204 1 510 287 145 18 chr3 445591 445873 -217591285 - L2 LINE L2 0 3313 2996 505 278 126 36 chr3 447094 447317 -217589841 + MIR SINE MIR 7 249 -13 4283 105 21 10 chr3 447790 447907 -217589251 - MER41B LTR ERV1 0 635 521 2374 102 0 6 chr3 447907 448220 -217588938 + AluSx SINE Alu 1 311 -1 4283 105 21 10 chr3 448220 448730 -217588428 - MER41B LTR ERV1 -114 521 1 35 54 0 0 chr3 448762 448818 -217588340 + AT_rich Low_complexity Low_complexity 1 56 0 374 308 43 0 chr3 448818 448935 -217588223 + L2 LINE L2 3144 3265 -7 2252 106 0 7 chr3 449343 449646 -217587512 - AluSx SINE Alu -11 301 1 260 77 0 0 chr3 450967 451006 -217586152 - MADE1 DNA Mariner 0 80 42 1019 191 19 10 chr3 451066 451275 -217585883 + MER82 DNA MER2_type 10 220 -433 428 82 0 0 chr3 451510 451571 -217585587 - Alu SINE Alu -9 302 242 1825 254 21 14 chr3 451572 452009 -217585149 + MER82 DNA MER2_type 212 651 -2 268 294 76 11 chr3 452171 452263 -217584895 + L2 LINE L2 3175 3272 0 1243 140 0 0 chr3 452363 452542 -217584616 + AluSg/x SINE Alu 130 308 -2 22 0 0 0 chr3 452618 452640 -217584518 + AT_rich Low_complexity Low_complexity 1 22 0 272 89 0 22 chr3 453004 453049 -217584109 + (TTTTC)n Simple_repeat Simple_repeat 2 45 0 1841 171 97 8 chr3 454159 454550 -217582608 - MSTB LTR MaLR 0 426 1 1789 142 7 23 chr3 454798 455100 -217582058 + AluSx SINE Alu 1 297 -15 230 54 0 0 chr3 455384 455421 -217581737 - AluSq SINE Alu -4 295 259 1058 154 6 6 chr3 455422 455591 -217581567 - AluSq SINE Alu -95 218 50 1770 168 0 3 chr3 455615 455906 -217581252 + AluJb SINE Alu 1 290 -22 341 154 0 0 chr3 456459 456511 -217580647 - L2 LINE L2 -1 3312 3261 194 152 0 22 chr3 456625 456671 -217580487 + CT-rich Low_complexity Low_complexity 2 46 0 227 337 131 58 chr3 457866 458264 -217578894 - MLT1K LTR MaLR -22 566 140 975 196 0 0 chr3 458656 458829 -217578329 + AluJb SINE Alu 135 307 -5 220 295 209 8 chr3 460629 460758 -217576400 - L2 LINE L2 -4 3309 3155 271 400 22 22 chr3 462134 462269 -217574889 - L2 LINE L2 -4 3268 3134 192 322 164 0 chr3 462509 462661 -217574497 - L2 LINE L2 -400 2914 2738 16224 94 11 7 chr3 463330 466493 -217570665 - L1PA7 LINE L1 -1 6153 2978 220 189 44 22 chr3 467217 467307 -217569851 + (TA)n Simple_repeat Simple_repeat 2 93 0 24 67 0 0 chr3 467421 467466 -217569692 + AT_rich Low_complexity Low_complexity 1 45 0 283 210 65 0 chr3 470102 470240 -217566918 + (TA)n Simple_repeat Simple_repeat 2 148 0 1235 216 61 22 chr3 470946 471393 -217565765 - AluJo SINE Alu 0 458 1 871 206 79 14 chr3 471741 471955 -217565203 + AluJo SINE Alu 1 228 -84 3789 175 36 1 chr3 472155 472894 -217564264 - L1MC1 LINE L1 -9 6324 5560 482 261 36 12 chr3 473014 473179 -217563979 - MER20B DNA MER1_type -604 179 11 397 199 0 3 chr3 473304 473403 -217563755 + L1ME3 LINE L1 6066 6163 -1 213 39 0 0 chr3 475876 475902 -217561256 + (TC)n Simple_repeat Simple_repeat 2 27 0 * 453 36 0 0 chr3 475901 475956 -217561202 + (TA)n Simple_repeat Simple_repeat 1 55 0 877 261 123 64 chr3 476012 476525 -217560633 - MLT1H LTR MaLR -6 543 1 192 277 213 19 chr3 476775 476930 -217560228 - MIR SINE MIR -65 197 13 3191 130 74 42 chr3 477341 477934 -217559224 - LTR9 LTR ERV1 0 612 1 386 103 176 0 chr3 477959 478027 -217559131 + MADE1 DNA Mariner 1 80 0 976 110 65 0 chr3 478220 478375 -217558783 + L1MA3 LINE L1 6141 6305 0 1215 148 10 5 chr3 480536 480738 -217556420 + L1PA16 LINE L1 5784 5986 -180 1146 171 9 14 chr3 480763 480979 -217556179 + L1PA16 LINE L1 5951 6165 -1 186 43 0 0 chr3 481177 481200 -217555958 + (A)n Simple_repeat Simple_repeat 1 23 0 930 231 0 0 chr3 482127 482300 -217554858 + FAM SINE Alu 1 173 -2 253 347 13 13 chr3 482597 482747 -217554411 + MER113 DNA MER1_type? 336 485 -36 193 347 137 0 chr3 482765 482860 -217554298 - L3 LINE CR1 -23 1554 1447 22 56 0 0 chr3 483883 483919 -217553239 + AT_rich Low_complexity Low_complexity 1 36 0 624 248 7 7 chr3 483965 484110 -217553048 + Charlie1a DNA MER1_type 9 153 -1302 1262 160 106 13 chr3 484112 484216 -217552942 + AluJo SINE Alu 1 94 -218 356 55 18 0 chr3 484216 484271 -217552887 + (TA)n Simple_repeat Simple_repeat 1 56 0 1262 160 106 13 chr3 484271 484403 -217552755 + AluJo SINE Alu 94 259 -53 2659 222 113 35 chr3 484403 485319 -217551839 + Charlie1a DNA MER1_type 191 1178 -277 760 188 0 14 chr3 485320 485464 -217551694 + FRAM SINE Alu 20 161 -15 794 197 89 37 chr3 485467 485736 -217551422 + Charlie1a DNA MER1_type 1168 1450 -5 241 250 83 0 chr3 485739 485811 -217551347 - MIR3 SINE MIR -46 162 85 279 0 0 0 chr3 486189 486220 -217550938 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 447 218 0 0 chr3 486224 486311 -217550847 - AluJ SINE Alu -26 286 200 762 196 0 14 chr3 486318 486461 -217550697 - AluJ SINE Alu -171 141 1 30 0 0 0 chr3 487221 487251 -217549907 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr3 488146 488174 -217548984 + AT_rich Low_complexity Low_complexity 1 28 0 323 310 115 19 chr3 488950 489263 -217547895 + L1ME4a LINE L1 5514 5856 -265 36 0 0 0 chr3 489473 489509 -217547649 + AT_rich Low_complexity Low_complexity 1 36 0 219 320 80 40 chr3 490070 490195 -217546963 + MIR SINE MIR 59 188 -74 450 254 0 51 chr3 490409 490527 -217546631 - MLT1I LTR MaLR -213 196 85 278 258 0 0 chr3 491132 491198 -217545960 + GA-rich Low_complexity Low_complexity 3 68 0 297 331 7 0 chr3 491259 491404 -217545754 + L1ME LINE L1 2217 2362 -3784 442 290 59 5 chr3 491450 491671 -217545487 + L1ME LINE L1 2473 2705 -3441 718 230 33 53 chr3 491715 492076 -217545082 + L1ME LINE L1 2795 3148 -2998 350 290 82 51 chr3 492075 492489 -217544669 + L1ME LINE L1 4419 4845 -1301 * 186 103 0 0 chr3 492524 492553 -217544605 + (TC)n Simple_repeat Simple_repeat 2 30 0 232 315 22 0 chr3 492573 492665 -217544493 + L1ME LINE L1 4918 5011 -1135 1512 174 0 78 chr3 492746 492780 -217544378 - AluJo SINE Alu -2 310 275 279 0 0 0 chr3 492780 492811 -217544347 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1512 174 0 78 chr3 492811 493110 -217544048 - AluJo SINE Alu -37 275 3 309 337 70 30 chr3 493375 493805 -217543353 + L1ME LINE L1 5370 5816 -346 23 0 0 0 chr3 494693 494716 -217542442 + AT_rich Low_complexity Low_complexity 1 23 0 265 306 72 0 chr3 495190 495301 -217541857 - L2 LINE L2 -6 3307 3189 198 0 0 0 chr3 495516 495538 -217541620 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 929 184 0 0 chr3 495541 495693 -217541465 - AluJb SINE Alu -26 286 135 1780 190 40 52 chr3 495695 495774 -217541384 - L1MB7 LINE L1 -10 6174 6096 710 217 0 0 chr3 495774 495903 -217541255 - FLAM_A SINE Alu -1 132 4 1780 190 40 52 chr3 495903 496301 -217540857 - L1MB7 LINE L1 -88 6096 5703 443 324 97 8 chr3 497495 497733 -217539425 - MIR SINE MIR -3 259 1 2135 49 0 28 chr3 498751 498950 -217538208 - AluY SINE Alu -2 309 119 5149 52 12 12 chr3 498950 499617 -217537541 - L1PA5 LINE L1 -13 6141 5475 2135 49 0 28 chr3 499617 499701 -217537457 - AluY SINE Alu -192 119 34 30 27 0 0 chr3 499892 499929 -217537229 + AT_rich Low_complexity Low_complexity 1 37 0 23 78 0 0 chr3 504779 504830 -217532328 + AT_rich Low_complexity Low_complexity 1 51 0 349 333 23 0 chr3 504959 505088 -217532070 + MER103 DNA DNA 24 155 -11 27 0 0 0 chr3 505909 505936 -217531222 + AT_rich Low_complexity Low_complexity 1 27 0 216 0 0 0 chr3 506037 506061 -217531097 + (CA)n Simple_repeat Simple_repeat 2 25 0 21 57 0 0 chr3 506368 506403 -217530755 + AT_rich Low_complexity Low_complexity 1 35 0 724 203 0 0 chr3 506434 506557 -217530601 + FRAM SINE Alu 22 144 -32 208 51 26 26 chr3 506557 506596 -217530562 + (TAAAA)n Simple_repeat Simple_repeat 1 39 0 1905 146 0 0 chr3 507012 507353 -217529805 - AluY SINE Alu 0 341 1 208 305 84 11 chr3 509779 509874 -217527284 + MIR SINE MIR 63 164 -98 21 57 0 0 chr3 510890 510925 -217526233 + AT_rich Low_complexity Low_complexity 1 35 0 189 350 41 16 chr3 511509 511632 -217525526 + MIR3 SINE MIR 75 200 -8 246 330 30 20 chr3 514589 514689 -217522469 + MIR3 SINE MIR 81 181 -27 27 29 0 0 chr3 515755 515789 -217521369 + AT_rich Low_complexity Low_complexity 1 34 0 252 59 0 0 chr3 515997 516031 -217521127 + (CA)n Simple_repeat Simple_repeat 2 35 0 29 47 0 0 chr3 516558 516601 -217520557 + AT_rich Low_complexity Low_complexity 1 43 0 226 328 0 0 chr3 516711 516778 -217520380 + Zaphod DNA AcHobo 1 67 -3964 509 286 128 17 chr3 516909 517199 -217519959 + MER115 DNA AcHobo 370 691 -2 230 352 28 0 chr3 517212 517320 -217519838 + MIR SINE MIR 40 150 -112 766 231 55 39 chr3 517382 517637 -217519521 + MIR SINE MIR 4 262 0 200 231 58 0 chr3 517913 517965 -217519193 - MIR SINE MIR -77 185 131 * 636 277 190 34 chr3 517963 518656 -217518502 - L2 LINE L2 0 3313 2498 212 351 72 9 chr3 518647 518758 -217518400 - MIR SINE MIR -68 140 23 * 321 309 123 25 chr3 518974 519136 -217518022 - MIR SINE MIR -54 208 31 1733 206 65 54 chr3 519617 520113 -217517045 - MLT1D LTR MaLR 0 505 5 286 331 32 16 chr3 520161 520285 -217516873 - L2 LINE L2 -6 3266 3141 379 115 57 8 chr3 520524 520646 -217516512 + (TA)n Simple_repeat Simple_repeat 1 128 0 225 359 58 6 chr3 520705 520861 -217516297 + MIR SINE MIR 99 262 0 1954 146 19 10 chr3 520864 521173 -217515985 - AluSx SINE Alu 0 312 1 4242 20 0 2 chr3 522161 522657 -217514501 - L1PA2 LINE L1 -1 6154 5660 3730 18 0 0 chr3 522657 523099 -217514059 + L1P LINE L1 4857 5298 -848 831 186 6 27 chr3 523974 524157 -217513001 - MER96B DNA MER1_type? -238 179 1 201 242 15 30 chr3 525690 525756 -217511402 + CT-rich Low_complexity Low_complexity 4 68 0 479 351 52 12 chr3 526263 526511 -217510647 + MIR SINE MIR 5 262 0 377 278 17 9 chr3 526944 527059 -217510099 - L2 LINE L2 -8 3305 3190 2212 121 0 0 chr3 527759 528056 -217509102 + AluSx SINE Alu 1 297 -15 527 298 13 77 chr3 528923 529158 -217508000 + MIR SINE MIR 15 234 -28 1275 142 0 10 chr3 529235 529439 -217507719 - L1PA8A LINE L1 -3 6443 6242 26104 138 9 17 chr3 529441 535624 -217501534 - L1PA8A LINE L1 -250 6196 2 475 299 137 10 chr3 537236 537433 -217499725 - MIR SINE MIR -10 252 31 328 327 9 0 chr3 537710 537820 -217499338 + MLT1I LTR MaLR 281 391 -18 277 348 106 12 chr3 537873 538034 -217499124 - MER5A DNA MER1_type -13 176 1 263 382 21 21 chr3 538914 539058 -217498100 - MER5A DNA MER1_type -44 145 2 303 306 104 22 chr3 540115 540249 -217496909 + LTR33 LTR ERVL 3 147 -374 22 0 0 0 chr3 541327 541349 -217495809 + AT_rich Low_complexity Low_complexity 1 22 0 353 345 76 29 chr3 542573 542744 -217494414 - MER5A DNA MER1_type -3 186 8 4494 155 20 27 chr3 542882 543667 -217493491 - LTR39 LTR ERV1 -2 781 2 26 0 0 0 chr3 545050 545076 -217492082 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr3 545716 545738 -217491420 + AT_rich Low_complexity Low_complexity 1 22 0 183 376 56 16 chr3 545893 546018 -217491140 - MIR SINE MIR -76 186 57 2226 124 0 0 chr3 547118 547416 -217489742 + AluSg SINE Alu 1 298 -12 1126 146 34 0 chr3 548391 548597 -217488561 + L1MA8 LINE L1 6067 6279 -12 25 0 0 0 chr3 549102 549127 -217488031 + AT_rich Low_complexity Low_complexity 1 25 0 2348 92 3 6 chr3 549836 550150 -217487008 + AluSp SINE Alu 1 313 0 201 300 38 12 chr3 551107 551187 -217485971 - L2 LINE L2 -5 3308 3227 437 214 161 0 chr3 551815 551927 -217485231 + MIR SINE MIR 133 262 0 2012 132 10 16 chr3 552803 553106 -217484052 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr3 553166 553188 -217483970 + AT_rich Low_complexity Low_complexity 1 22 0 856 270 23 0 chr3 553499 553714 -217483444 + MER58A DNA MER1_type 1 220 -4 282 353 131 18 chr3 554403 554561 -217482597 - MIR SINE MIR -10 252 61 2105 55 0 0 chr3 554561 554818 -217482340 + AluY SINE Alu 40 296 -15 282 353 131 18 chr3 554818 554880 -217482278 - MIR SINE MIR -201 61 7 32 0 0 0 chr3 555125 555157 -217482001 + AT_rich Low_complexity Low_complexity 1 32 0 311 322 29 41 chr3 555267 555438 -217481720 - L1 LINE L1 -1854 4292 4124 256 214 95 24 chr3 555501 555585 -217481573 + MIR SINE MIR 30 119 -89 202 387 13 0 chr3 555668 555743 -217481415 + L2 LINE L2 3182 3257 -15 374 267 112 64 chr3 555957 556144 -217481014 + MIR SINE MIR 2 197 -65 453 108 12 48 chr3 557262 557345 -217479813 - MADE1 DNA Mariner 0 80 1 24 0 0 0 chr3 558907 558931 -217478227 + AT_rich Low_complexity Low_complexity 1 24 0 2284 89 7 3 chr3 560931 561233 -217475925 + AluSq SINE Alu 2 304 -9 1138 126 11 0 chr3 562220 562394 -217474764 + AluSg/x SINE Alu 131 306 -6 1723 199 0 0 chr3 562471 562772 -217474386 - AluSx SINE Alu -11 301 1 22 35 0 0 chr3 564301 564330 -217472828 + AT_rich Low_complexity Low_complexity 1 29 0 255 125 0 0 chr3 564366 564406 -217472752 + (GAAA)n Simple_repeat Simple_repeat 4 43 0 1569 239 43 108 chr3 564439 564997 -217472161 - MLT1F1 LTR MaLR 0 567 24 810 113 0 0 chr3 565013 565119 -217472039 + AluSg/x SINE Alu 177 282 -28 195 114 0 0 chr3 565124 565159 -217471999 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 235 180 20 0 chr3 565564 565614 -217471544 - MLT1I LTR MaLR -1 408 358 597 311 97 12 chr3 565667 565915 -217471243 - MLT1I LTR MaLR -140 269 1 1980 189 3 3 chr3 566381 566746 -217470412 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr3 567790 567812 -217469346 + AT_rich Low_complexity Low_complexity 1 22 0 256 312 37 37 chr3 569956 570065 -217467093 + MIR SINE MIR 59 167 -95 54 84 0 0 chr3 571087 571218 -217465940 + AT_rich Low_complexity Low_complexity 1 131 0 606 177 39 23 chr3 571408 571538 -217465620 + FLAM_C SINE Alu 1 132 -1 251 316 221 6 chr3 571542 571700 -217465458 - MIR SINE MIR -43 219 28 778 357 116 27 chr3 572680 573386 -217463772 + L2 LINE L2 2112 2880 -434 272 282 68 61 chr3 573744 573907 -217463251 + LTR16C LTR ERVL 326 489 -2 362 383 19 13 chr3 574129 574283 -217462875 + L2 LINE L2 3118 3272 0 1028 294 137 19 chr3 574352 575198 -217461960 + L2 LINE L2 2355 3312 -1 21 57 0 0 chr3 575596 575631 -217461527 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr3 575708 575730 -217461428 + AT_rich Low_complexity Low_complexity 1 22 0 241 275 0 14 chr3 576318 576387 -217460771 + MIR SINE MIR 174 241 -21 562 274 104 0 chr3 576655 576819 -217460339 - MER5A DNA MER1_type -8 181 1 324 0 0 0 chr3 578377 578413 -217458745 + (CA)n Simple_repeat Simple_repeat 1 36 0 3271 159 17 22 chr3 579374 579958 -217457200 + L1PA16 LINE L1 5493 6073 -93 613 254 122 0 chr3 580354 580551 -217456607 + MER58A DNA MER1_type 2 222 -2 657 290 106 5 chr3 581783 582000 -217455158 + MIR SINE MIR 8 246 -16 302 263 68 79 chr3 582153 582343 -217454815 + MLT1L LTR MaLR 207 394 -221 23 54 0 0 chr3 582669 582706 -217454452 + AT_rich Low_complexity Low_complexity 1 37 0 1613 154 10 61 chr3 582933 583245 -217453913 + AluSq SINE Alu 1 296 -17 670 165 31 16 chr3 583683 583810 -217453348 + FLAM_C SINE Alu 1 129 -4 567 289 59 30 chr3 584419 584733 -217452425 + MLT1I LTR MaLR 56 405 -4 360 350 85 0 chr3 584760 584960 -217452198 + L2 LINE L2 1753 1969 -1345 563 310 78 52 chr3 584960 585347 -217451811 + L2 LINE L2 2576 2972 -342 1477 267 95 40 chr3 585395 585890 -217451268 + MLT1E LTR MaLR 35 556 -37 192 346 51 0 chr3 585951 586029 -217451129 + L2 LINE L2 2992 3073 -240 227 263 126 53 chr3 586087 586182 -217450976 + MLT1J LTR MaLR 1 102 -409 272 315 117 9 chr3 586182 586293 -217450865 + MIR SINE MIR 140 262 0 189 200 140 0 chr3 586473 586523 -217450635 - L2 LINE L2 -8 3264 3208 473 290 58 0 chr3 587005 587143 -217450015 - MIR SINE MIR -17 245 100 728 223 38 0 chr3 588243 588400 -217448758 + MER3 DNA MER1_type 37 199 -10 240 304 88 35 chr3 591006 591177 -217445981 - MLT1L LTR MaLR -229 386 207 450 302 23 0 chr3 591207 591336 -217445822 - MLT1L LTR MaLR -353 262 131 379 270 0 11 chr3 591443 591532 -217445626 - MER2 DNA MER2_type -250 95 8 898 313 79 25 chr3 592602 593034 -217444124 + LTR16B LTR ERVL 8 462 -2 21 0 0 0 chr3 593077 593098 -217444060 + AT_rich Low_complexity Low_complexity 1 21 0 596 328 69 33 chr3 593113 593564 -217443594 - L1MC4a LINE L1 -1969 5839 5373 195 246 98 0 chr3 594862 594923 -217442235 - MIR SINE MIR -27 235 169 846 262 81 89 chr3 594945 595338 -217441820 + LTR16B LTR ERVL 1 390 -74 421 101 0 38 chr3 595344 595423 -217441735 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 314 285 16 41 chr3 595453 595490 -217441668 + LTR16B LTR ERVL 345 381 -83 1741 148 0 0 chr3 595490 595754 -217441404 - AluSx SINE Alu -44 268 5 314 285 16 41 chr3 595754 595839 -217441319 + LTR16B LTR ERVL 381 464 0 732 309 129 35 chr3 596179 596661 -217440497 + MLT1H LTR MaLR 18 544 -5 851 308 144 13 chr3 596689 597222 -217439936 + MLT1L LTR MaLR 1 603 -12 21 0 0 0 chr3 597500 597521 -217439637 + AT_rich Low_complexity Low_complexity 1 21 0 373 216 216 8 chr3 599094 599228 -217437930 + MLT1H LTR MaLR 1 162 -387 323 293 79 43 chr3 599400 599653 -217437505 + MLT1H LTR MaLR 294 555 0 4851 120 3 0 chr3 600491 601208 -217435950 + L1PA11 LINE L1 5455 6173 -1 309 67 0 0 chr3 601515 601560 -217435598 - MLT2A1 LTR ERVL -10 434 390 378 267 0 0 chr3 601561 601651 -217435507 - L1MC4 LINE L1 -1339 6703 6614 279 173 0 0 chr3 601653 601705 -217435453 + (CA)n Simple_repeat Simple_repeat 2 53 0 821 65 0 0 chr3 601706 601813 -217435345 - HERVL LTR ERVL -1239 4415 4309 319 86 69 26 chr3 601813 601929 -217435229 + (TA)n Simple_repeat Simple_repeat 1 121 0 2648 86 35 15 chr3 601929 602326 -217434832 - MLT2A1 LTR ERVL -39 405 1 41436 72 8 13 chr3 602326 608006 -217429152 - HERVL-A1-A1 LTR ERVL 0 5654 1 3240 71 40 0 chr3 608009 608434 -217428724 - MLT2A1 LTR ERVL -2 442 1 180 111 0 0 chr3 608535 608562 -217428596 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 1375 168 50 42 chr3 609094 609356 -217427802 + AluJb SINE Alu 1 264 -48 603 86 19 9 chr3 610662 610767 -217426391 + (TA)n Simple_repeat Simple_repeat 1 106 0 24 67 0 0 chr3 610796 610841 -217426317 + AT_rich Low_complexity Low_complexity 1 45 0 809 243 0 0 chr3 610841 610993 -217426165 + AluJb SINE Alu 129 280 -32 1969 149 39 3 chr3 611049 611384 -217425774 - MER7A DNA MER2_type 0 346 2 486 266 65 26 chr3 612037 612191 -217424967 - MIR SINE MIR 0 262 103 258 210 60 60 chr3 613240 613340 -217423818 + MIR SINE MIR 100 199 -63 230 295 162 0 chr3 613563 613668 -217423490 - MIR SINE MIR -101 161 40 387 152 27 18 chr3 614174 614286 -217422872 + MER96B DNA MER1_type? 66 178 -239 270 183 0 0 chr3 614418 614489 -217422669 + (TA)n Simple_repeat Simple_repeat 2 72 0 296 284 0 0 chr3 614497 614578 -217422580 + MER96B DNA MER1_type? 330 410 -7 562 306 38 16 chr3 614743 614929 -217422229 - MIR SINE MIR -69 193 4 1687 198 18 3 chr3 615382 615721 -217421437 - MER2 DNA MER2_type 0 344 1 2102 141 3 0 chr3 615721 616019 -217421139 - AluSx SINE Alu -13 299 1 218 281 83 0 chr3 616995 617091 -217420067 + MIR SINE MIR 110 213 -49 469 113 0 0 chr3 617217 617279 -217419879 + AluSg/x SINE Alu 217 278 -34 210 336 97 9 chr3 617657 617770 -217419388 + L2 LINE L2 3190 3312 -1 1612 162 0 35 chr3 619114 619398 -217417760 + AluJo SINE Alu 6 279 -33 22 0 0 0 chr3 621984 622006 -217415152 + AT_rich Low_complexity Low_complexity 1 22 0 592 271 52 29 chr3 622253 622463 -217414695 + LTR33 LTR ERVL 6 220 -301 1366 273 112 12 chr3 622555 623064 -217414094 - MLT1G1 LTR MaLR 0 595 36 274 270 11 11 chr3 623136 623225 -217413933 + LTR33 LTR ERVL 433 521 0 1058 240 78 18 chr3 624300 624684 -217412474 - LTR50 LTR ERVL -3 792 386 255 211 42 0 chr3 624815 624886 -217412272 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 332 326 0 36 chr3 625090 625228 -217411930 - MIR SINE MIR -12 250 118 266 217 42 192 chr3 625340 625460 -217411698 - MER91A DNA MER1_type -5 191 90 621 339 12 0 chr3 625467 625632 -217411526 - MER91A DNA MER1_type -28 168 2 1064 244 94 77 chr3 625782 626188 -217410970 - MLT1F LTR MaLR -3 539 123 2161 109 0 32 chr3 626188 626499 -217410659 - AluSg SINE Alu -9 301 1 1064 244 94 77 chr3 626499 626547 -217410611 - MLT1F LTR MaLR -419 123 77 21 0 0 0 chr3 626740 626761 -217410397 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 627384 627405 -217409753 + AT_rich Low_complexity Low_complexity 1 21 0 300 91 0 0 chr3 628920 628964 -217408194 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 334 274 37 44 chr3 628995 629130 -217408028 + MER117 DNA MER1_type 64 197 0 2002 153 132 5 chr3 629158 629536 -217407622 - MSTA LTR MaLR -1 427 2 228 359 11 22 chr3 629598 629690 -217407468 + MER5B DNA MER1_type 88 178 0 22 0 0 0 chr3 629716 629738 -217407420 + AT_rich Low_complexity Low_complexity 1 22 0 749 129 0 0 chr3 629741 629857 -217407301 - L1MA2 LINE L1 -9 6295 6180 750 165 8 0 chr3 630422 630543 -217406615 - FLAM_C SINE Alu -11 122 1 357 93 0 0 chr3 630561 630615 -217406543 + (TG)n Simple_repeat Simple_repeat 1 54 0 204 308 0 0 chr3 630652 630704 -217406454 + CT-rich Low_complexity Low_complexity 3 54 0 207 69 0 0 chr3 630706 630735 -217406423 + (CA)n Simple_repeat Simple_repeat 1 29 0 2158 169 54 7 chr3 631470 631878 -217405280 + MSTA LTR MaLR 1 427 -1 6375 186 132 9 chr3 631883 633286 -217403872 + MSTA-int LTR MaLR 5 1580 0 2137 152 53 22 chr3 633286 633661 -217403497 + MSTA LTR MaLR 1 392 -36 2003 131 0 29 chr3 633661 633975 -217403183 - AluSg SINE Alu -5 305 1 2137 152 53 22 chr3 633975 634014 -217403144 + MSTA LTR MaLR 392 428 0 1497 182 7 107 chr3 634014 634427 -217402731 - MLT1B LTR MaLR -16 374 3 2811 207 23 58 chr3 634608 635356 -217401802 - MER72 LTR ERV1 0 722 1 237 250 25 0 chr3 635399 635479 -217401679 - HsTC2 DNA Tc2 0 1898 1817 329 335 30 6 chr3 635626 635793 -217401365 + L1MEd LINE L1 447 617 -5502 946 236 38 5 chr3 635916 636128 -217401030 + MER58A DNA MER1_type 6 224 0 573 278 25 6 chr3 636133 636295 -217400863 - MIR SINE MIR -56 206 42 243 87 87 22 chr3 636350 636396 -217400762 + L2 LINE L2 3265 3313 0 264 250 0 42 chr3 636410 636482 -217400676 - MIR SINE MIR -176 86 18 2331 64 0 32 chr3 636944 637257 -217399901 - AluY SINE Alu -8 303 1 351 206 14 14 chr3 637465 637538 -217399620 - MIR SINE MIR -188 74 2 282 369 27 0 chr3 637987 638136 -217399022 + L2 LINE L2 2053 2205 -1109 440 295 7 40 chr3 638485 638634 -217398524 - MER5B DNA MER1_type -34 144 1 592 199 46 8 chr3 639060 639191 -217397967 - MER20 DNA MER1_type -21 198 63 495 197 120 0 chr3 639191 639308 -217397850 + FLAM_A SINE Alu 11 141 -1 319 278 139 56 chr3 639497 639841 -217397317 + MLT1H LTR MaLR 108 491 -58 7267 121 9 10 chr3 639841 641743 -217395415 + L1PA8A LINE L1 4220 6129 -2 319 278 139 56 chr3 641743 641794 -217395364 + MLT1H LTR MaLR 491 536 -13 766 255 91 26 chr3 642020 642251 -217394907 - MIR SINE MIR -14 248 3 1174 203 28 46 chr3 643656 643982 -217393176 + MER33 DNA MER1_type 5 324 0 1028 178 26 4 chr3 644184 644448 -217392710 + AluSx SINE Alu 1 270 -42 286 161 69 0 chr3 644450 644537 -217392621 + AluSg/x SINE Alu 176 268 -32 286 161 69 0 chr3 644539 644626 -217392532 + AluSg/x SINE Alu 176 268 -32 290 149 69 0 chr3 644628 644715 -217392443 + AluSg/x SINE Alu 176 268 -32 340 138 69 0 chr3 644717 644804 -217392354 + AluSg/x SINE Alu 176 268 -32 290 149 69 0 chr3 644806 644893 -217392265 + AluSg/x SINE Alu 176 268 -32 329 138 69 0 chr3 644895 644982 -217392176 + AluSg/x SINE Alu 178 270 -32 290 149 69 0 chr3 644984 645071 -217392087 + AluSg/x SINE Alu 176 268 -32 329 149 64 0 chr3 645073 645167 -217391991 + AluSg/x SINE Alu 176 275 -25 23 0 0 0 chr3 645186 645209 -217391949 + GC_rich Low_complexity Low_complexity 1 23 0 356 288 83 51 chr3 645386 645625 -217391533 - MIR SINE MIR -6 256 8 523 320 115 4 chr3 646278 646512 -217390646 - MIR SINE MIR -2 260 1 2158 91 0 10 chr3 647284 647593 -217389565 - L1PA13 LINE L1 -2 6161 5856 319 247 213 20 chr3 648144 648294 -217388864 - MER5A DNA MER1_type 0 189 11 1139 330 52 7 chr3 648324 648911 -217388247 + L2 LINE L2 2459 3070 -243 705 270 107 67 chr3 648913 649498 -217387660 - MLT1G1 LTR MaLR 0 595 1 384 247 190 17 chr3 649519 649693 -217387465 + L2 LINE L2 3106 3309 -4 187 297 0 16 chr3 649758 649822 -217387336 + MIR SINE MIR 187 249 -13 403 267 0 0 chr3 650110 650200 -217386958 + MIR SINE MIR 101 190 -72 2068 181 8 3 chr3 650249 650620 -217386538 + MER93b LTR ERV1 1 373 0 221 160 217 19 chr3 651056 651162 -217385996 + MIR SINE MIR 125 251 -11 1531 157 91 49 chr3 651551 651901 -217385257 - MLT1A1 LTR MaLR 0 365 1 445 125 0 0 chr3 652700 652797 -217384361 + AluS SINE Alu 221 317 0 1041 238 94 3 chr3 653291 653598 -217383560 + MER2 DNA MER2_type 1 335 -10 492 293 157 58 chr3 654552 654928 -217382230 + MLT1J2 LTR MaLR 1 413 -37 297 273 27 55 chr3 654986 655096 -217382062 - MIR SINE MIR -31 231 125 724 233 57 5 chr3 656254 656447 -217380711 - MER3 DNA MER1_type -2 207 5 1080 204 33 49 chr3 656459 656731 -217380427 + MER33 DNA MER1_type 1 269 -2316 2030 148 0 0 chr3 656731 657029 -217380129 - AluSx SINE Alu -14 298 1 1080 204 33 49 chr3 657029 657085 -217380073 + MER33 DNA MER1_type 269 324 0 1162 275 88 10 chr3 657121 657507 -217379651 - LTR65 LTR ERV1 -29 640 225 180 297 128 34 chr3 657685 657833 -217379325 + L2 LINE L2 2895 3056 -216 231 280 56 19 chr3 657975 658082 -217379076 + L2 LINE L2 3201 3311 -2 688 262 27 22 chr3 659101 659284 -217377874 - MER5A DNA MER1_type -3 186 3 308 237 237 0 chr3 659544 659637 -217377521 - L2 LINE L2 0 3313 3199 819 268 107 53 chr3 659652 660175 -217376983 - MLT1H1 LTR MaLR -2 553 3 702 250 109 0 chr3 660412 660596 -217376562 - MIR SINE MIR -1 261 58 29 70 0 0 chr3 662749 662806 -217374352 + AT_rich Low_complexity Low_complexity 1 57 0 180 152 0 0 chr3 662870 662903 -217374255 + (TAA)n Simple_repeat Simple_repeat 3 35 0 301 289 11 0 chr3 663025 663115 -217374043 - L1MC4 LINE L1 -1339 6703 6613 23 78 0 0 chr3 664341 664392 -217372766 + AT_rich Low_complexity Low_complexity 1 51 0 362 326 23 0 chr3 664521 664650 -217372508 + MER103 DNA DNA 24 155 -11 1988 135 4 0 chr3 665903 666204 -217370954 - AluSx SINE Alu 0 302 1 282 353 83 0 chr3 666272 666405 -217370753 - MER5A DNA MER1_type 0 189 46 352 267 168 31 chr3 666456 666647 -217370511 - L2 LINE L2 -69 3244 3028 401 188 0 10 chr3 666848 666944 -217370214 + (CA)n Simple_repeat Simple_repeat 1 95 0 1615 178 52 0 chr3 666966 667253 -217369905 + AluJb SINE Alu 1 302 -10 946 329 36 17 chr3 667334 667745 -217369413 + L3 LINE CR1 946 1364 -213 404 261 164 48 chr3 668314 668536 -217368622 + MER113 DNA MER1_type? 38 312 -209 2202 117 7 0 chr3 668536 668845 -217368313 + AluSx SINE Alu 1 311 -1 404 261 164 48 chr3 668845 668952 -217368206 + MER113 DNA MER1_type? 312 405 -116 232 353 39 0 chr3 669353 669455 -217367703 - L2 LINE L2 0 3272 3167 876 216 52 28 chr3 669512 669725 -217367433 - MER20 DNA MER1_type 0 219 2 831 186 6 27 chr3 671808 671991 -217365167 - MER96B DNA MER1_type? -238 179 1 201 242 15 30 chr3 673524 673590 -217363568 + CT-rich Low_complexity Low_complexity 4 68 0 479 351 52 12 chr3 674097 674345 -217362813 + MIR SINE MIR 5 262 0 377 278 17 9 chr3 674778 674893 -217362265 - L2 LINE L2 -8 3305 3190 215 305 180 8 chr3 676305 676433 -217360725 + L2 LINE L2 3160 3309 -4 990 196 0 0 chr3 678233 678406 -217358752 - AluJb SINE Alu -5 307 135 243 264 36 82 chr3 679086 679196 -217357962 + MLT1K LTR MaLR 462 566 -22 194 152 0 22 chr3 680391 680437 -217356721 + GA-rich Low_complexity Low_complexity 2 46 0 336 154 0 0 chr3 680551 680603 -217356555 + L2 LINE L2 3261 3312 -1 1794 175 0 3 chr3 681156 681447 -217355711 - AluJb SINE Alu -22 290 1 22 35 0 0 chr3 682976 683005 -217354153 + AT_rich Low_complexity Low_complexity 1 29 0 234 150 0 0 chr3 683041 683081 -217354077 + (GAAA)n Simple_repeat Simple_repeat 4 43 0 1563 241 43 108 chr3 683114 683672 -217353486 - MLT1F1 LTR MaLR 0 567 24 805 115 0 0 chr3 683688 683834 -217353324 + AluSg/x SINE Alu 177 322 0 237 180 20 0 chr3 684239 684289 -217352869 - MLT1I LTR MaLR -1 408 358 611 306 97 12 chr3 684342 684590 -217352568 - MLT1I LTR MaLR -140 269 1 2016 186 3 3 chr3 685056 685421 -217351737 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr3 686465 686487 -217350671 + AT_rich Low_complexity Low_complexity 1 22 0 242 312 37 37 chr3 688630 688739 -217348419 + MIR SINE MIR 59 167 -95 41 98 0 0 chr3 689761 689893 -217347265 + AT_rich Low_complexity Low_complexity 1 132 0 602 177 39 31 chr3 690083 690213 -217346945 + FLAM_C SINE Alu 1 131 -2 255 285 228 13 chr3 690217 690375 -217346783 - MIR SINE MIR -43 219 28 250 285 0 0 chr3 691246 691323 -217345835 + FRAM/FAM SINE Alu 14 81 -94 627 235 37 31 chr3 691348 691510 -217345648 + AluJb SINE Alu 149 311 -1 679 258 0 12 chr3 691747 691910 -217345248 - AluJb SINE Alu -23 289 129 346 314 96 13 chr3 691991 692147 -217345011 + MIR SINE MIR 46 214 -48 4981 94 6 1 chr3 692153 692854 -217344304 + L1PA10 LINE L1 5453 6156 -12 227 129 0 0 chr3 692897 692928 -217344230 + L2 LINE L2 3263 3293 -20 1918 233 93 14 chr3 693031 693516 -217343642 - MLT1E LTR MaLR -4 589 67 201 347 31 10 chr3 693520 693618 -217343540 + L3 LINE CR1 1334 1433 -144 580 292 53 19 chr3 694144 694353 -217342805 + MIR SINE MIR 46 261 -1 566 289 142 0 chr3 695793 695990 -217341168 + MIR SINE MIR 30 254 -8 29 0 0 0 chr3 696150 696179 -217340979 + AT_rich Low_complexity Low_complexity 1 29 0 418 303 82 26 chr3 696729 696924 -217340234 - MIR SINE MIR -2 260 55 254 273 225 23 chr3 697014 697124 -217340034 - MIR SINE MIR -37 171 36 1779 123 40 7 chr3 698156 698466 -217338692 + AluSx SINE Alu 1 319 0 25 0 0 0 chr3 698903 698928 -217338230 + AT_rich Low_complexity Low_complexity 1 25 0 207 204 0 41 chr3 699752 699801 -217337357 + CT-rich Low_complexity Low_complexity 5 51 0 1922 241 76 3 chr3 700119 700695 -217336463 + L1MC4 LINE L1 6459 7076 -966 1755 239 123 3 chr3 700704 701295 -217335863 + L1MC4 LINE L1 7238 7899 -143 233 329 0 47 chr3 702669 702754 -217334404 + L2 LINE L2 3191 3271 -42 283 296 71 10 chr3 702996 703094 -217334064 - L2 LINE L2 0 3313 3210 195 298 48 96 chr3 703456 703523 -217333635 - MIR SINE MIR -27 235 166 5867 103 28 1 chr3 703523 704430 -217332728 + L1PA13 LINE L1 5230 6160 -3 195 298 48 96 chr3 704430 704550 -217332608 - MIR SINE MIR -96 166 57 1919 178 61 16 chr3 704637 705063 -217332095 + MER65A LTR ERV1 1 445 0 195 381 48 24 chr3 705171 705339 -217331819 - MER5A DNA MER1_type -15 174 3 476 366 98 17 chr3 705479 705602 -217331556 - L2 LINE L2 0 3313 3201 261 0 0 0 chr3 705602 705631 -217331527 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 476 366 98 17 chr3 705631 705979 -217331179 - L2 LINE L2 -112 3201 2804 418 328 56 33 chr3 706615 706920 -217330238 + MER68 LTR ERV1 231 542 -20 1371 224 7 0 chr3 707074 707355 -217329803 + Tigger7 DNA MER2_type 1 283 -450 361 324 85 0 chr3 707496 707672 -217329486 - L1ME4a LINE L1 -206 5915 5725 1986 140 4 0 chr3 709762 710040 -217327118 - AluSx SINE Alu -33 279 1 379 270 0 0 chr3 712780 712869 -217324289 + Tigger7 DNA MER2_type 2499 2587 0 219 183 39 19 chr3 712929 713033 -217324125 + (TA)n Simple_repeat Simple_repeat 1 106 0 798 264 111 97 chr3 713055 713747 -217323411 + MER21B LTR ERV1 12 713 -150 2514 211 3 63 chr3 713786 714375 -217322783 - MLT2B3 LTR ERVL 0 554 1 322 247 22 22 chr3 716409 716498 -217320660 + MLT1H LTR MaLR 136 224 -325 233 326 0 0 chr3 716636 716728 -217320430 + MLT1H LTR MaLR 454 545 -4 2122 97 4 0 chr3 716938 717216 -217319942 + AluSg SINE Alu 1 279 -31 267 31 0 0 chr3 717222 717254 -217319904 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 23 33 0 0 chr3 717922 717952 -217319206 + AT_rich Low_complexity Low_complexity 1 30 0 674 329 44 17 chr3 718193 718537 -217318621 + L2 LINE L2 2196 2548 -766 721 292 4 30 chr3 718756 718992 -217318166 + MIR SINE MIR 23 252 -10 339 300 44 128 chr3 719424 719509 -217317649 + L2 LINE L2 3020 3111 -161 1508 186 95 23 chr3 719509 719858 -217317300 - MLT1A2 LTR MaLR 0 374 1 339 300 44 128 chr3 719858 720045 -217317113 + L2 LINE L2 3111 3269 -3 366 307 26 9 chr3 720187 720301 -217316857 + MIR3 SINE MIR 87 202 -6 190 294 119 16 chr3 720366 720492 -217316666 + L2 LINE L2 2041 2179 -1135 1081 182 14 5 chr3 720503 720717 -217316441 + MER58A DNA MER1_type 9 224 0 1104 289 43 109 chr3 720717 721930 -217315228 + L2 LINE L2 2176 3311 -2 201 161 18 71 chr3 722380 722436 -217314722 - L2 LINE L2 -755 2559 2507 297 301 130 21 chr3 722992 723231 -217313927 + MLT1J LTR MaLR 228 492 -19 2550 291 95 34 chr3 724680 725218 -217311940 + L2 LINE L2 34 538 -2776 2323 100 3 0 chr3 725218 725528 -217311630 - AluY SINE Alu 0 311 1 2550 291 95 34 chr3 725528 726182 -217310976 + L2 LINE L2 538 1299 -2015 1061 314 133 13 chr3 726238 726988 -217310170 + L2 LINE L2 2486 3313 0 351 335 197 0 chr3 727788 728006 -217309152 - L3 LINE CR1 -1 1576 1316 354 301 44 65 chr3 728155 728540 -217308618 - MLT1J1 LTR MaLR -20 426 50 768 345 75 18 chr3 728672 729072 -217308086 - L3 LINE CR1 -251 1326 904 462 350 53 31 chr3 729529 729849 -217307309 - L1ME LINE L1 -318 5803 5477 248 192 68 27 chr3 729946 730019 -217307139 - L1M3 LINE L1 -729 5442 5367 320 327 79 0 chr3 730135 730236 -217306922 + L2 LINE L2 2432 2540 -774 189 290 11 75 chr3 730246 730339 -217306819 + L2 LINE L2 3173 3259 -54 1595 184 150 36 chr3 730562 730655 -217306503 + MLT1D LTR MaLR 1 82 -423 4011 80 30 2 chr3 730655 731194 -217305964 - MER41A LTR ERV1 0 554 1 1595 184 150 36 chr3 731194 731546 -217305612 + MLT1D LTR MaLR 82 497 -8 227 114 0 0 chr3 731759 731794 -217305364 - MLT2D LTR ERVL 0 515 481 388 104 13 13 chr3 731800 731828 -217305330 + (GA)n Simple_repeat Simple_repeat 1 28 -49 279 0 0 0 chr3 731828 731859 -217305299 + (CA)n Simple_repeat Simple_repeat 2 32 0 388 104 13 13 chr3 731859 731907 -217305251 + (GA)n Simple_repeat Simple_repeat 27 77 0 1521 168 29 59 chr3 731907 732282 -217304876 - MLT2D LTR ERVL -48 366 3 24 32 0 0 chr3 732448 732479 -217304679 + AT_rich Low_complexity Low_complexity 1 31 0 1092 182 47 14 chr3 732622 732980 -217304178 + MER61B LTR ERV1 1 389 -36 22 0 0 0 chr3 733611 733633 -217303525 + AT_rich Low_complexity Low_complexity 1 22 0 217 256 133 44 chr3 733956 734046 -217303112 - MIR3 SINE MIR -108 100 3 23 54 0 0 chr3 734214 734251 -217302907 + AT_rich Low_complexity Low_complexity 1 37 0 612 273 67 29 chr3 735222 735431 -217301727 - MIR SINE MIR -7 255 39 342 331 35 7 chr3 735815 735960 -217301198 + MIR3 SINE MIR 55 203 -5 2145 201 14 14 chr3 735986 736414 -217300744 + MSTA LTR MaLR 1 428 0 750 255 27 0 chr3 736504 736692 -217300466 + MER20 DNA MER1_type 27 219 0 1895 228 82 8 chr3 738187 738688 -217298470 - MLT1F LTR MaLR -2 540 3 617 343 58 29 chr3 738745 739121 -217298037 - L2 LINE L2 -86 3227 2841 329 380 25 13 chr3 741079 741237 -217295921 + L2 LINE L2 2936 3095 -177 290 303 98 16 chr3 741305 741427 -217295731 - MIR SINE MIR -21 241 110 317 167 0 50 chr3 741532 741592 -217295566 - AluJo SINE Alu -6 295 239 894 195 13 0 chr3 741593 741752 -217295406 - AluJo SINE Alu -136 176 16 181 132 19 19 chr3 741802 741855 -217295303 + (TTATA)n Simple_repeat Simple_repeat 5 57 0 190 130 19 37 chr3 741881 741935 -217295223 + (TATAA)n Simple_repeat Simple_repeat 2 54 0 604 251 94 21 chr3 741937 742128 -217295030 - MER63A DNA MER1_type -5 205 1 256 287 35 61 chr3 742182 742297 -217294861 + L2 LINE L2 3161 3272 0 186 171 0 0 chr3 742780 742821 -217294337 + (ATG)n Simple_repeat Simple_repeat 2 42 0 316 264 231 0 chr3 742894 743015 -217294143 + MIR SINE MIR 23 171 -91 679 254 20 5 chr3 743165 743366 -217293792 + MER3 DNA MER1_type 6 209 0 372 306 200 0 chr3 743963 744123 -217293035 - MIR3 SINE MIR -1 207 16 426 267 14 34 chr3 745956 746102 -217291056 - Charlie8 DNA MER1_type -2274 143 1 273 293 113 0 chr3 747757 747863 -217289295 + MIR SINE MIR 143 260 -2 370 357 7 29 chr3 747892 748032 -217289126 + L2 LINE L2 3134 3270 -2 825 200 0 0 chr3 748349 748489 -217288669 - FRAM SINE Alu -19 157 18 1893 209 76 15 chr3 749410 749884 -217287274 + MLT1D LTR MaLR 3 505 0 784 248 70 33 chr3 750066 750308 -217286850 + MIR SINE MIR 2 252 -10 224 233 16 16 chr3 750318 750380 -217286778 - MIR SINE MIR -61 147 93 589 211 0 23 chr3 750869 751002 -217286156 - MER5A DNA MER1_type -59 130 1 1476 176 146 5 chr3 752135 752504 -217284654 - MSTB1 LTR MaLR -4 428 8 685 288 23 0 chr3 752907 753084 -217284074 - MIR SINE MIR -26 236 56 249 348 34 0 chr3 753119 753237 -217283921 + MIR SINE MIR 139 260 -2 371 217 29 0 chr3 754367 754436 -217282722 + MER58 DNA MER1_type 2350 2420 0 929 331 78 18 chr3 754632 754799 -217282359 + L2 LINE L2 2455 2610 -703 1372 210 57 20 chr3 754799 755151 -217282007 + MLT1A1 LTR MaLR 1 365 0 929 331 78 18 chr3 755151 755798 -217281360 + L2 LINE L2 2610 3309 -4 431 318 68 36 chr3 756834 757054 -217280104 - MIR SINE MIR -14 248 22 1805 152 7 0 chr3 757212 757489 -217279669 + AluSx SINE Alu 1 279 -33 336 119 15 30 chr3 757574 757641 -217279517 - Alu SINE Alu 0 301 236 22 0 0 0 chr3 758202 758224 -217278934 + AT_rich Low_complexity Low_complexity 1 22 0 233 355 13 0 chr3 758239 758315 -217278843 + L2 LINE L2 3182 3258 -14 232 289 12 60 chr3 758461 758544 -217278614 + MIR SINE MIR 21 99 -109 968 263 26 4 chr3 758756 758984 -217278174 - MIR SINE MIR -10 252 20 1972 114 14 21 chr3 759190 759480 -217277678 + AluSc SINE Alu 1 288 -21 261 349 0 0 chr3 760198 760281 -217276877 + L2 LINE L2 3190 3272 0 204 327 45 36 chr3 760432 760542 -217276616 + L2 LINE L2 3156 3266 -6 261 261 22 97 chr3 761410 761540 -217275618 + MIR SINE MIR 20 139 -69 193 260 26 65 chr3 761540 761617 -217275541 + MER5A DNA MER1_type 2 75 -114 5842 223 92 16 chr3 761618 763546 -217273612 + L1MDa LINE L1 14 2263 -4277 192 234 16 121 chr3 763726 763850 -217273308 + MIR SINE MIR 141 251 -11 365 261 43 58 chr3 765097 765235 -217271923 + MLT1L LTR MaLR 438 573 -42 1570 149 11 48 chr3 765709 766049 -217271109 + MER61C LTR ERV1 1 428 -6 1159 236 56 25 chr3 766061 766345 -217270813 - MER4D LTR ERV1 -56 847 555 1800 161 0 3 chr3 766420 766706 -217270452 - MER49 LTR ERV1 -638 285 1 240 283 87 0 chr3 767536 767628 -217269530 - MIR SINE MIR -92 170 71 1067 114 12 0 chr3 767772 767938 -217269220 + MER41B LTR ERV1 1 168 -467 2972 131 9 6 chr3 768040 768506 -217268652 + MER41B LTR ERV1 169 635 0 822 147 0 0 chr3 768779 768908 -217268250 + FLAM_C SINE Alu 2 130 -3 230 157 59 0 chr3 769328 769379 -217267779 + L1P LINE L1 577 630 -5516 371 98 0 0 chr3 770485 770536 -217266622 - MADE1 DNA Mariner -29 51 1 338 321 24 97 chr3 771211 771750 -217265408 - L2 LINE L2 -1 3312 2813 189 271 235 0 chr3 772043 772128 -217265030 - MIR3 SINE MIR -4 204 100 282 301 40 45 chr3 772295 772494 -217264664 + L1ME4a LINE L1 5732 5929 -192 293 256 144 38 chr3 772574 772734 -217264424 - MIR SINE MIR -26 236 60 21 57 0 0 chr3 773628 773663 -217263495 + AT_rich Low_complexity Low_complexity 1 35 0 1848 140 11 11 chr3 773826 774111 -217263047 + AluJb SINE Alu 1 285 -27 449 296 31 25 chr3 774126 774285 -217262873 - MIR SINE MIR -55 207 48 283 338 63 24 chr3 774862 775069 -217262089 - MIR SINE MIR -28 234 20 889 211 0 0 chr3 775161 775327 -217261831 - FRAM SINE Alu -18 158 1 600 79 20 10 chr3 775328 775429 -217261729 + (TTC)n Simple_repeat Simple_repeat 1 102 0 750 161 0 60 chr3 775989 776138 -217261020 + FLAM_C SINE Alu 1 140 -3 219 324 95 0 chr3 776276 776350 -217260808 - MIR3 SINE MIR -46 162 82 283 224 35 0 chr3 776435 776493 -217260665 - MER91C DNA MER1_type -17 123 64 287 365 42 18 chr3 777074 777241 -217259917 + MIR SINE MIR 20 190 -72 303 299 64 45 chr3 777285 777360 -217259798 + L2 LINE L2 3106 3178 -94 2344 141 8 0 chr3 777360 777721 -217259437 - THE1B LTR MaLR 0 364 1 303 299 64 45 chr3 777721 777802 -217259356 + L2 LINE L2 3178 3265 -7 261 368 30 30 chr3 778775 778908 -217258250 + MIR3 SINE MIR 6 138 -70 1161 238 18 28 chr3 780223 780509 -217256649 - MLT1C LTR MaLR 0 467 185 1146 202 125 35 chr3 780599 780886 -217256272 - MLT1D-int LTR MaLR -179 1192 880 3386 222 11 50 chr3 780973 781865 -217255293 - MLT1D-int LTR MaLR -488 883 27 1672 163 3 14 chr3 781882 782189 -217254969 + AluJb SINE Alu 3 306 0 1385 233 34 79 chr3 782191 782720 -217254438 - MLT1D LTR MaLR 0 505 1 358 312 85 0 chr3 782725 782866 -217254292 - MIR SINE MIR -2 260 108 1530 158 75 0 chr3 782869 783147 -217254011 - MSTB1 LTR MaLR 0 432 134 331 297 86 38 chr3 783817 784130 -217253028 - L1ME4a LINE L1 -68 6053 5726 423 274 0 0 chr3 784447 784549 -217252609 - MIR SINE MIR 0 262 161 2121 195 158 27 chr3 784549 785243 -217251915 - LTR48 LTR ERV1 0 729 1 290 270 11 11 chr3 785243 785332 -217251826 - MIR SINE MIR -98 164 76 824 216 125 4 chr3 785474 785706 -217251452 + MIR SINE MIR 2 261 -1 459 256 56 0 chr3 786396 786556 -217250602 + (TATATG)n Simple_repeat Simple_repeat 4 172 0 21 36 0 0 chr3 787699 787727 -217249431 + AT_rich Low_complexity Low_complexity 1 28 0 235 256 68 105 chr3 787914 788047 -217249111 - MIR SINE MIR -32 230 103 437 197 205 0 chr3 788131 788248 -217248910 - MIR SINE MIR -73 189 49 576 140 0 56 chr3 788329 788436 -217248722 - Tigger7 DNA MER2_type 0 2487 2387 * 2766 175 58 0 chr3 788425 788911 -217248247 - Tigger7 DNA MER2_type -1973 514 1 34 84 0 0 chr3 789825 789908 -217247250 + AT_rich Low_complexity Low_complexity 1 83 0 24 0 0 0 chr3 790128 790152 -217247006 + AT_rich Low_complexity Low_complexity 1 24 0 25 65 0 0 chr3 790902 790948 -217246210 + AT_rich Low_complexity Low_complexity 1 46 0 4523 72 7 0 chr3 791185 791771 -217245387 - LTR10C LTR ERV1 -1 590 1 2479 56 3 0 chr3 791799 792102 -217245056 + AluY SINE Alu 1 304 -7 428 222 30 30 chr3 792529 792664 -217244494 - MER69 DNA AcHobo -12 2514 2380 821 136 116 61 chr3 792876 793074 -217244084 + L1MA6 LINE L1 5821 6029 -271 230 421 86 17 chr3 793094 793327 -217243831 + L2 LINE L2 3009 3257 -15 761 284 102 0 chr3 793330 793566 -217243592 - MIR SINE MIR 0 262 3 2566 108 3 18 chr3 794293 794674 -217242484 - THE1C LTR MaLR 0 375 1 21 36 0 0 chr3 797650 797678 -217239480 + AT_rich Low_complexity Low_complexity 1 28 0 333 174 0 0 chr3 798723 798792 -217238366 + (CA)n Simple_repeat Simple_repeat 1 69 0 375 307 12 18 chr3 798828 798991 -217238167 + (CA)n Simple_repeat Simple_repeat 1 162 0 293 294 5 53 chr3 799040 799250 -217237908 + (CA)n Simple_repeat Simple_repeat 1 199 0 359 171 14 0 chr3 800119 800189 -217236969 + MER116 DNA Mariner 1 71 -9 321 47 0 0 chr3 800677 800720 -217236438 + (TC)n Simple_repeat Simple_repeat 2 44 0 1712 215 66 17 chr3 800723 801193 -217235965 + MLT1D LTR MaLR 5 497 -8 192 276 92 72 chr3 801316 801468 -217235690 + MIR SINE MIR 31 185 -77 356 238 85 43 chr3 801594 801629 -217235529 - MER34B LTR ERV1 0 565 533 1387 222 73 9 chr3 801629 801972 -217235186 + MLT1A1 LTR MaLR 1 365 0 356 238 85 43 chr3 801972 802100 -217235058 - MER34B LTR ERV1 -32 533 395 1355 173 9 0 chr3 802115 802340 -217234818 + AluJo SINE Alu 84 310 -2 658 243 17 65 chr3 802345 802699 -217234459 - MER34B LTR ERV1 -184 381 4 273 228 63 47 chr3 803051 803178 -217233980 + L1MCa LINE L1 140 268 -6296 1034 296 25 46 chr3 803178 803359 -217233799 + L1MCa LINE L1 141 324 -5721 2130 52 0 0 chr3 803359 803628 -217233530 - AluY SINE Alu -6 305 37 1034 296 25 46 chr3 803628 803885 -217233273 + L1MCa LINE L1 324 570 -5475 312 146 0 0 chr3 804070 804118 -217233040 + Alu SINE Alu 235 282 -20 1860 206 47 67 chr3 804118 804652 -217232506 + LTR9 LTR ERV1 1 523 -89 915 93 0 0 chr3 804682 804800 -217232358 - AluSg1 SINE Alu -191 118 1 307 240 58 19 chr3 804800 804904 -217232254 + LTR19C LTR ERV1 672 779 0 198 91 0 0 chr3 804909 804942 -217232216 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1526 214 128 49 chr3 804942 805599 -217231559 + L1MCa LINE L1 619 1338 -4966 1969 144 0 10 chr3 805599 805734 -217231424 + AluSx SINE Alu 1 136 -176 2095 119 20 3 chr3 805734 806029 -217231129 + AluSx SINE Alu 1 300 -12 1969 144 0 10 chr3 806029 806184 -217230974 + AluSx SINE Alu 136 288 -24 1526 214 128 49 chr3 806184 806310 -217230848 + L1MCa LINE L1 1338 1453 -4851 276 100 0 0 chr3 807623 807663 -217229495 + (CA)n Simple_repeat Simple_repeat 2 41 0 1597 154 130 17 chr3 807818 808163 -217228995 - MLT1B LTR MaLR -2 388 5 1170 121 156 0 chr3 808646 808845 -217228313 + MER30 DNA MER1_type 1 230 0 1526 211 0 4 chr3 808909 809188 -217227970 + AluJb SINE Alu 6 283 -29 355 354 9 0 chr3 809214 809327 -217227831 + MIR SINE MIR 33 146 -116 517 205 192 26 chr3 809356 809507 -217227651 - MER5A DNA MER1_type -5 184 9 232 237 66 26 chr3 809511 809587 -217227571 + MIR SINE MIR 168 246 -16 311 285 74 104 chr3 810078 810404 -217226754 + L2 LINE L2 2996 3311 -2 186 189 0 0 chr3 810404 810441 -217226717 + (TGGA)n Simple_repeat Simple_repeat 1 37 0 985 204 88 4 chr3 812533 812783 -217224375 + ORSL DNA AcHobo 2 272 -3 357 213 43 156 chr3 813163 813304 -217223854 + L2 LINE L2 3188 3312 -1 417 218 0 0 chr3 913633 913720 -217123438 - MER54B LTR ERVL -6 787 701 745 221 47 9 chr3 913729 914159 -217122999 + L1MCa LINE L1 2004 2486 -4259 373 189 0 0 chr3 914156 914230 -217122928 + L1MD3 LINE L1 7732 7805 -190 * 2724 246 22 22 chr3 914230 914792 -217122366 + L1MB7 LINE L1 4566 5127 -1057 5612 30 26 0 chr3 914792 915470 -217121688 + L1PA5 LINE L1 5457 6152 -2 2724 246 22 22 chr3 915470 916513 -217120645 + L1MB7 LINE L1 5127 6168 -16 6455 68 9 0 chr3 916527 917681 -217119477 - L1PA8 LINE L1 -2 6170 5083 190 272 130 53 chr3 918090 918259 -217118899 - L2 LINE L2 -2 3311 3130 462 248 94 0 chr3 918577 918694 -217118464 - FLAM_C SINE Alu -15 128 1 1378 164 0 33 chr3 918697 919001 -217118157 - L1 LINE L1 -1536 4610 4317 2452 215 77 10 chr3 919007 919629 -217117529 - L1MDa LINE L1 -5846 694 31 439 329 74 25 chr3 919717 919960 -217117198 + MIR SINE MIR 8 262 0 571 257 14 35 chr3 920030 920174 -217116984 + MIR3 SINE MIR 16 156 -52 1808 184 0 48 chr3 920684 921060 -217116098 - MLT1B LTR MaLR 0 390 33 278 65 0 22 chr3 921060 921106 -217116052 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 1939 99 3 46 chr3 921118 921400 -217115758 - AluSc SINE Alu -39 270 1 2191 254 35 5 chr3 921902 922480 -217114678 + L2 LINE L2 1927 2521 -793 2268 220 64 8 chr3 922497 923238 -217113920 - L1ME1 LINE L1 -6 6160 5350 362 58 96 0 chr3 923238 923342 -217113816 + (TA)n Simple_repeat Simple_repeat 2 115 0 22558 150 12 13 chr3 923342 925806 -217111352 - L1PA10 LINE L1 -10 6473 4010 462 18 0 0 chr3 925806 925861 -217111297 + (TG)n Simple_repeat Simple_repeat 2 56 0 22558 150 12 13 chr3 925861 928267 -217108891 - L1PA10 LINE L1 -2473 4010 1610 841 30 0 0 chr3 928267 928368 -217108790 - L1PA4 LINE L1 -8 6147 6047 22558 150 12 13 chr3 928368 928668 -217108490 - L1PA10 LINE L1 -4873 1610 1311 203 0 37 0 chr3 928682 928709 -217108449 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 37441 82 5 2 chr3 928756 934881 -217102277 - L1PA5 LINE L1 0 6154 11 2324 183 15 28 chr3 934939 935477 -217101681 - L1PA10 LINE L1 -4734 1141 717 2709 190 6 2 chr3 935477 935983 -217101175 - L1PA10 LINE L1 -5367 508 1 642 154 83 6 chr3 935997 936153 -217101005 - L1M4 LINE L1 -799 5347 5180 1551 257 89 67 chr3 936163 936929 -217100229 + L2 LINE L2 2513 3313 0 2388 155 32 0 chr3 937586 938024 -217099134 - Tigger1 DNA MER2_type -1 2417 1966 7514 31 0 0 chr3 938026 939395 -217097763 - L1PA4 LINE L1 0 6155 4789 11492 196 35 9 chr3 939396 941716 -217095442 - L1M1 LINE L1 -4888 2677 298 625 261 61 6 chr3 941825 942005 -217095153 - L1M1 LINE L1 -7215 350 161 * 15789 133 7 8 chr3 941998 942902 -217094256 + L1P LINE L1 2296 3200 -2946 1526 97 9 44 chr3 942902 943129 -217094029 + AluY SINE Alu 84 302 -9 15789 133 7 8 chr3 943129 944961 -217092197 + L1P LINE L1 3200 5027 -1119 1699 132 3 0 chr3 944971 945258 -217091900 - L1P LINE L1 -990 5156 4869 * 5871 132 1 5 chr3 945256 946227 -217090931 - L1P LINE L1 -1620 4526 3560 10575 219 28 35 chr3 946228 951175 -217085983 - L1PA15-16 LINE L1 -2157 4692 8 459 163 0 0 chr3 951175 951255 -217085903 - Tigger1 DNA MER2_type -443 1975 1896 259 203 0 31 chr3 951257 951321 -217085837 + (TATG)n Simple_repeat Simple_repeat 2 63 0 11050 150 35 5 chr3 951330 953182 -217083976 - Tigger1 DNA MER2_type -511 1907 2 194 340 128 0 chr3 953391 953485 -217083673 + L2 LINE L2 3158 3263 -9 538 354 14 7 chr3 953610 953754 -217083404 + MER91A DNA MER1_type 51 195 -1 205 260 123 68 chr3 954266 954412 -217082746 + MER5A DNA MER1_type 35 188 -1 180 0 0 0 chr3 954930 954950 -217082208 + (TG)n Simple_repeat Simple_repeat 2 21 0 281 229 84 0 chr3 955290 955373 -217081785 + MIR SINE MIR 64 153 -109 21 57 0 0 chr3 955462 955497 -217081661 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr3 955567 955599 -217081559 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr3 955632 955662 -217081496 + AT_rich Low_complexity Low_complexity 1 30 0 3736 195 36 13 chr3 955756 956609 -217080549 + L1MA4A LINE L1 1768 2640 -4209 2430 167 31 22 chr3 956612 957062 -217080096 + LTR22A LTR ERVK 5 458 0 6109 118 22 14 chr3 957064 957641 -217079517 + HERVK22 LTR ERVK 3 591 -6246 2706 26 0 0 chr3 957641 957948 -217079210 + AluYb8 SINE Alu 1 307 -11 6109 118 22 14 chr3 957948 958296 -217078862 + HERVK22 LTR ERVK 591 935 -5902 10475 122 4 1 chr3 958296 959792 -217077366 + HERVK22 LTR ERVK 2144 3644 -3193 12083 136 1 5 chr3 959798 961761 -217075397 + HERVK22 LTR ERVK 3188 6836 -1 2433 171 13 19 chr3 961762 962223 -217074935 + LTR22A LTR ERVK 1 458 0 7154 225 53 10 chr3 962223 966125 -217071033 + L1MA4A LINE L1 2635 6749 -256 * 7631 84 2 2 chr3 966121 967183 -217069975 + L1P LINE L1 1871 2932 -3214 1029 47 0 0 chr3 967171 967299 -217069859 - L1P LINE L1 -3101 3045 2918 * 370 138 51 0 chr3 967317 967393 -217069765 + L1MA4A LINE L1 6739 6822 -180 5172 168 10 29 chr3 967427 968821 -217068337 - L1P LINE L1 -4610 1536 8 27674 76 5 2 chr3 968876 973413 -217063745 + L1PA6 LINE L1 1608 6153 -1 186 133 0 0 chr3 973418 973448 -217063710 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 208 139 0 0 chr3 973468 973504 -217063654 + (A)n Simple_repeat Simple_repeat 1 36 0 378 356 67 0 chr3 973507 973687 -217063471 - MIR SINE MIR -2 260 69 212 286 189 51 chr3 974172 974347 -217062811 - L3 LINE CR1 -27 1550 1352 261 73 0 0 chr3 974646 974687 -217062471 - L1PA6 LINE L1 0 6154 6114 487 257 68 14 chr3 974691 974839 -217062319 - MIR3 SINE MIR -38 170 15 2043 181 42 44 chr3 975089 975517 -217061641 - MSTB LTR MaLR 0 415 1 2074 127 0 0 chr3 975599 975914 -217061244 - AluSx SINE Alu 0 315 1 2074 123 7 3 chr3 975921 976214 -217060944 - AluSc SINE Alu -13 296 3 227 281 206 7 chr3 977374 977520 -217059638 - MIR SINE MIR 0 262 88 22 0 0 0 chr3 977520 977542 -217059616 + AT_rich Low_complexity Low_complexity 1 22 0 441 327 42 0 chr3 977582 977747 -217059411 - MIR SINE MIR -71 191 20 344 259 88 57 chr3 978000 978160 -217058998 - L1ME3 LINE L1 -311 5855 5691 376 272 127 13 chr3 978219 978377 -217058781 + L2 LINE L2 3138 3313 0 515 318 24 16 chr3 978524 978776 -217058382 - L1ME3 LINE L1 -1301 4845 4592 24 32 0 0 chr3 979365 979396 -217057762 + AT_rich Low_complexity Low_complexity 1 31 0 20272 114 12 2 chr3 979605 981931 -217055227 + L1M3f LINE L1 1103 3878 -2450 336 64 0 0 chr3 981931 981978 -217055180 + (CAA)n Simple_repeat Simple_repeat 2 48 0 20272 114 12 2 chr3 981978 982765 -217054393 + L1M3f LINE L1 3878 4656 -1672 6689 73 7 2 chr3 982765 984376 -217052782 + L1PA7 LINE L1 4538 6151 -3 622 237 50 32 chr3 984612 984831 -217052327 + L1MC4 LINE L1 7807 8029 -13 302 186 34 0 chr3 984848 984907 -217052251 + AluJ/FLAM SINE Alu 25 85 -217 584 196 108 6 chr3 984926 985092 -217052066 + L1MC2 LINE L1 5961 6148 -226 1531 184 27 0 chr3 985092 985375 -217051783 - AluSx SINE Alu 0 304 15 1890 152 36 30 chr3 985533 985863 -217051295 - THE1B LTR MaLR -32 332 1 535 380 10 0 chr3 985908 986221 -217050937 + L1MC4a LINE L1 5513 5828 -1980 17228 170 32 15 chr3 986230 988977 -217048181 + L1M1 LINE L1 37 2974 -4591 2173 128 0 0 chr3 988977 989275 -217047883 + AluSg SINE Alu 2 299 -11 17228 170 32 15 chr3 989275 989744 -217047414 + L1M1 LINE L1 2974 3433 -4132 452 171 0 0 chr3 989749 989825 -217047333 - L1P LINE L1 -2546 3600 3525 259 290 63 50 chr3 991093 991213 -217045945 - MIR3 SINE MIR -9 199 78 184 295 21 32 chr3 991562 991657 -217045501 - L3b LINE CR1 -222 1361 1268 1131 158 34 49 chr3 991787 992053 -217045105 - L1MA1 LINE L1 -4 6298 6037 444 364 12 0 chr3 992829 992991 -217044167 - MIR3 SINE MIR 0 208 45 2486 196 50 0 chr3 993004 993701 -217043457 + L1PB2 LINE L1 551 1284 -4920 3038 175 40 3 chr3 993711 994318 -217042840 + L1PB2 LINE L1 1419 2047 -4157 1354 146 0 14 chr3 994320 994532 -217042626 - AluSq SINE Alu -16 297 89 12509 191 29 14 chr3 994537 996210 -217040948 + L1PB2 LINE L1 2096 3742 -2466 2028 164 86 5 chr3 996210 996606 -217040552 + MSTA LTR MaLR 1 428 0 12509 191 29 14 chr3 996606 998976 -217038182 + L1PB2 LINE L1 3742 6201 -7 21 36 0 0 chr3 998976 999004 -217038154 + AT_rich Low_complexity Low_complexity 1 28 0 2103 167 18 5 chr3 999014 999591 -217037567 + L1MA8 LINE L1 4981 5566 -725 2271 151 36 23 chr3 999594 1000032 -217037126 + MLT2A1 LTR ERVL 1 444 0 42177 91 5 6 chr3 1000032 1005689 -217031469 + HERVL-A1-A1 LTR ERVL 1 5654 0 2335 84 16 0 chr3 1005689 1005997 -217031161 + MLT2A1 LTR ERVL 1 313 -131 304 193 50 25 chr3 1005997 1006158 -217031000 + (TATAA)n Simple_repeat Simple_repeat 4 168 0 287 71 0 24 chr3 1006163 1006205 -217030953 + MLT2A1 LTR ERVL 411 451 -2 3476 159 53 9 chr3 1006205 1006898 -217030260 + L1MA8 LINE L1 5564 6287 -4 34 65 0 0 chr3 1007221 1007283 -217029875 + AT_rich Low_complexity Low_complexity 1 62 0 363 192 93 41 chr3 1007391 1007563 -217029595 - Charlie7 DNA MER1_type -28 2584 2404 2242 133 58 24 chr3 1007694 1008108 -217029050 + MSTA LTR MaLR 1 428 0 245 259 21 98 chr3 1008161 1008304 -217028854 - Charlie7 DNA MER1_type -2018 594 463 22 56 0 0 chr3 1008342 1008378 -217028780 + AT_rich Low_complexity Low_complexity 1 36 0 1292 294 48 53 chr3 1008533 1009614 -217027544 - L1ME3A LINE L1 -8 6162 5088 22690 188 14 28 chr3 1009633 1016249 -217020909 + L1PA10 LINE L1 10 6557 0 440 35 0 0 chr3 1017449 1017506 -217019652 + L1PA6 LINE L1 6093 6149 -5 229 291 8 30 chr3 1017517 1017651 -217019507 - L1ME3A LINE L1 -1053 5093 4963 511 178 51 0 chr3 1017680 1017798 -217019360 - L1MA8 LINE L1 -4 6287 6164 934 270 42 46 chr3 1017921 1018447 -217018711 - L1ME3A LINE L1 -1300 4846 4323 4312 243 74 16 chr3 1018451 1019114 -217018044 + L1ME3A LINE L1 2783 3406 -2740 2301 54 7 0 chr3 1019114 1019442 -217017716 + AluY SINE Alu 3 332 0 4312 243 74 16 chr3 1019442 1020277 -217016881 + L1ME3A LINE L1 3406 4369 -1777 21 82 0 0 chr3 1020484 1020533 -217016625 + AT_rich Low_complexity Low_complexity 1 49 0 1610 176 18 106 chr3 1020588 1021088 -217016070 + L1ME3A LINE L1 4369 4824 -1322 254 295 80 27 chr3 1021706 1021818 -217015340 - L2 LINE L2 -5 3267 3150 1462 206 49 25 chr3 1021953 1022361 -217014797 + L1ME3A LINE L1 4816 5233 -913 1335 266 85 33 chr3 1022356 1022991 -217014167 + HAL1 LINE L1 1840 2507 0 * 22 88 0 0 chr3 1023909 1023966 -217013192 + AT_rich Low_complexity Low_complexity 1 57 0 13495 220 38 19 chr3 1024001 1028152 -217009006 - L1MA5 LINE L1 -25 7337 3269 922 145 0 0 chr3 1028152 1028304 -217008854 - L1PA14 LINE L1 -1 6160 6009 13495 220 38 19 chr3 1028304 1029215 -217007943 - L1MA5 LINE L1 -4093 3269 2137 2027 155 0 0 chr3 1029215 1029506 -217007652 - AluSx SINE Alu -19 293 3 13495 220 38 19 chr3 1029506 1029905 -217007253 - L1MA5 LINE L1 -5225 2137 1747 230 218 36 0 chr3 1030216 1030271 -217006887 + L1M2 LINE L1 5499 5555 -742 * 783 257 87 10 chr3 1030241 1030550 -217006608 + L1ME3A LINE L1 5523 5855 -315 1661 52 0 0 chr3 1030705 1030915 -217006243 + L1PA3 LINE L1 5946 6155 0 439 289 15 22 chr3 1031337 1031472 -217005686 - MIR3 SINE MIR -33 175 42 3533 207 31 10 chr3 1032406 1033055 -217004103 - L1MA7 LINE L1 -10 6293 5558 2007 214 99 72 chr3 1033055 1033859 -217003299 + LTR1B LTR ERV1 1 826 0 3533 207 31 10 chr3 1033859 1034106 -217003052 - L1MA7 LINE L1 -745 5558 5318 441 282 24 32 chr3 1034106 1034230 -217002928 + L2 LINE L2 3146 3268 -4 263 420 13 21 chr3 1034398 1034634 -217002524 + L2 LINE L2 2825 3058 -214 301 319 80 11 chr3 1035041 1035229 -217001929 - L2 LINE L2 -873 2441 2241 751 224 29 24 chr3 1035597 1035767 -217001391 - FRAM SINE Alu -12 164 1 4201 125 0 2 chr3 1036312 1036952 -217000206 + L1MA3 LINE L1 5314 5952 -353 * 22742 172 26 61 chr3 1036930 1037852 -216999306 + L1PA10 LINE L1 1 954 -5214 4015 152 18 73 chr3 1037852 1038683 -216998475 + LTR1 LTR ERV1 1 785 0 22742 172 26 61 chr3 1038683 1038972 -216998186 + L1PA10 LINE L1 954 1252 -4916 206 0 69 0 chr3 1038972 1039001 -216998157 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 22742 172 26 61 chr3 1039001 1044190 -216992968 + L1PA10 LINE L1 1252 6165 -3 2039 96 88 6 chr3 1044196 1044539 -216992619 + L1MA3 LINE L1 5935 6305 0 2047 113 10 3 chr3 1044541 1044832 -216992326 + AluSq SINE Alu 1 293 -20 230 198 0 86 chr3 1046554 1046635 -216990523 - L1MB1 LINE L1 -1 6188 6115 532 177 31 0 chr3 1046638 1046734 -216990424 - FLAM_A SINE Alu -41 101 3 25626 63 21 1 chr3 1047460 1053470 -216983688 + L1PA5 LINE L1 3 6143 -11 21 0 0 0 chr3 1053708 1053729 -216983429 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 1053758 1053781 -216983377 + AT_rich Low_complexity Low_complexity 1 23 0 577 146 0 176 chr3 1053810 1053975 -216983183 - AluJb SINE Alu -92 220 85 408 279 149 13 chr3 1054164 1054318 -216982840 + MIR SINE MIR 46 220 -42 25 0 0 0 chr3 1054328 1054353 -216982805 + AT_rich Low_complexity Low_complexity 1 25 0 243 0 0 0 chr3 1055194 1055221 -216981937 + (A)n Simple_repeat Simple_repeat 1 27 0 2047 173 69 6 chr3 1055223 1055661 -216981497 - MER31A LTR ERV1 -12 531 3 236 100 25 0 chr3 1055860 1055900 -216981258 + (CA)n Simple_repeat Simple_repeat 2 42 0 224 231 31 0 chr3 1056156 1056221 -216980937 + (TTG)n Simple_repeat Simple_repeat 2 68 0 32 43 0 0 chr3 1056288 1056334 -216980824 + AT_rich Low_complexity Low_complexity 1 46 0 2283 101 6 20 chr3 1056402 1056748 -216980410 - L1PA13 LINE L1 -1 6162 5822 241 339 106 22 chr3 1057440 1057620 -216979538 - MIR SINE MIR -4 258 64 1523 195 41 21 chr3 1058630 1058678 -216978480 - MSTB2 LTR MaLR -112 345 299 2916 137 5 2 chr3 1058678 1059125 -216978033 - MER83 LTR ERV1 0 448 1 1523 195 41 21 chr3 1059125 1059414 -216977744 - MSTB2 LTR MaLR -158 299 1 246 95 0 0 chr3 1059995 1060037 -216977121 + (A)n Simple_repeat Simple_repeat 1 42 0 1052 323 89 19 chr3 1060111 1060582 -216976576 - L3 LINE CR1 -23 1554 1051 410 303 103 44 chr3 1060912 1061318 -216975840 + L2 LINE L2 2219 2648 -666 1820 161 16 3 chr3 1061366 1061671 -216975487 + MER1B DNA MER1_type 31 339 0 423 330 124 57 chr3 1061709 1062145 -216975013 + L2 LINE L2 2808 3272 0 360 236 73 16 chr3 1063557 1063680 -216973478 - MIR SINE MIR -28 234 105 291 54 0 0 chr3 1063912 1063949 -216973209 + (TC)n Simple_repeat Simple_repeat 1 37 0 237 132 0 0 chr3 1063948 1063986 -216973172 + (CA)n Simple_repeat Simple_repeat 1 38 0 * 1710 192 13 16 chr3 1064321 1064634 -216972524 + AluJo SINE Alu 1 312 0 1599 203 0 13 chr3 1064640 1064950 -216972208 + AluJb SINE Alu 3 308 -4 1632 209 6 16 chr3 1065339 1065654 -216971504 + AluJo SINE Alu 1 312 0 1684 197 0 13 chr3 1065658 1065968 -216971190 + AluJb SINE Alu 3 308 -4 8288 195 43 46 chr3 1066246 1066614 -216970544 - L1MB1 LINE L1 -1 6167 5799 1400 203 30 36 chr3 1066614 1066915 -216970243 - AluJo SINE Alu -3 299 1 8288 195 43 46 chr3 1066915 1068786 -216968372 - L1MB1 LINE L1 -369 5799 3929 1761 188 3 0 chr3 1068786 1069078 -216968080 - AluJb SINE Alu -13 299 7 8288 195 43 46 chr3 1069078 1070182 -216966976 - L1MB1 LINE L1 -2239 3929 2823 1123 222 45 70 chr3 1070244 1070612 -216966546 - L1MA9 LINE L1 -40 6272 5917 1697 171 29 6 chr3 1070612 1070927 -216966231 - L1PA15 LINE L1 -13 7590 7269 1123 222 45 70 chr3 1070927 1071026 -216966132 - L1MA9 LINE L1 -395 5917 5817 419 218 0 10 chr3 1071016 1071117 -216966041 - L1P LINE L1 -1981 4165 4066 * 10061 205 18 6 chr3 1071125 1074089 -216963069 - L1PA15 LINE L1 -347 7256 4253 2104 42 0 4 chr3 1074089 1074350 -216962808 - L1PA3 LINE L1 -1 6154 5895 364 339 32 22 chr3 1074854 1075167 -216961991 - L1PA15 LINE L1 -7259 322 7 528 196 20 34 chr3 1075175 1075323 -216961835 - L1MA9 LINE L1 -367 5945 5800 17786 133 24 38 chr3 1075335 1078796 -216958362 + L1P3 LINE L1 5 3450 -3011 6643 26 1 1 chr3 1078796 1079570 -216957588 + L1PA3 LINE L1 5373 6152 -3 17786 133 24 38 chr3 1079570 1080271 -216956887 + L1P3 LINE L1 3450 4159 -2302 2606 66 2 4 chr3 1080273 1080771 -216956387 - LTR7 LTR ERV1 -2 448 2 26253 54 1 2 chr3 1080772 1084237 -216952921 - HERVH LTR ERV1 0 7713 4252 13931 106 7 16 chr3 1084235 1086843 -216950315 - HERVH LTR ERV1 -1857 5234 1796 * 11732 36 3 1 chr3 1086847 1089044 -216948114 - L1PA3 LINE L1 -1 6154 3953 7247 47 23 0 chr3 1089044 1090026 -216947132 + L1PA3 LINE L1 2919 3923 -2223 4590 227 17 17 chr3 1090023 1090995 -216946163 - L1PA13 LINE L1 -3317 3480 2510 * 1203 46 0 0 chr3 1090995 1091147 -216946011 + L1PA4 LINE L1 6001 6152 -3 4590 227 17 17 chr3 1091147 1091669 -216945489 - L1PA13 LINE L1 -4287 2510 1972 1932 89 119 0 chr3 1091669 1091938 -216945220 - AluY SINE Alu 0 301 1 4590 227 17 17 chr3 1091938 1092380 -216944778 - L1PA13 LINE L1 -4825 1972 1532 909 124 103 0 chr3 1092922 1093067 -216944091 - THE1B LTR MaLR -204 160 1 836 121 0 48 chr3 1093954 1094145 -216943013 - L1PBa LINE L1 -3839 3023 2840 * 1015 131 16 0 chr3 1094143 1094326 -216942832 - L1MA6 LINE L1 -38 6262 6077 10071 25 7 0 chr3 1094389 1096346 -216940812 - L1PA5 LINE L1 -3 6151 4179 2747 238 33 23 chr3 1096346 1097196 -216939962 - L1 LINE L1 -896 5250 4410 1992 153 140 11 chr3 1097196 1097575 -216939583 - MSTA LTR MaLR 0 428 1 8608 168 10 31 chr3 1097577 1099187 -216937971 - MSTA-int LTR MaLR -2 1578 3 1650 164 144 31 chr3 1099191 1099574 -216937584 - MSTA LTR MaLR 0 428 3 2747 238 33 23 chr3 1099574 1099597 -216937561 - L1 LINE L1 -1738 4408 4360 793 270 18 32 chr3 1099619 1099960 -216937198 - L1MA9 LINE L1 -201 6111 5776 770 180 5 57 chr3 1100073 1100284 -216936874 + L1MA4A LINE L1 5848 6047 -256 * 24018 83 4 1 chr3 1100280 1104556 -216932602 + L1PA6 LINE L1 1871 6154 0 2932 48 19 3 chr3 1104562 1104938 -216932220 + L1PA6 LINE L1 5770 6151 -3 1193 136 14 0 chr3 1105001 1105221 -216931937 + L1MA6 LINE L1 6077 6299 -1 182 275 0 0 chr3 1105300 1105340 -216931818 - MIR SINE MIR -64 198 159 643 269 90 12 chr3 1105416 1105672 -216931486 - L2 LINE L2 -39 3274 2999 439 326 74 107 chr3 1105677 1106042 -216931116 - L2 LINE L2 -2 3270 2918 22 0 0 0 chr3 1106342 1106364 -216930794 + AT_rich Low_complexity Low_complexity 1 22 0 188 319 21 0 chr3 1106722 1106769 -216930389 - MIR SINE MIR -68 140 93 328 287 0 23 chr3 1106780 1106867 -216930291 - L2 LINE L2 0 3313 3229 * 537 320 90 21 chr3 1106856 1107190 -216929968 - L2 LINE L2 -1729 1585 1229 328 279 103 22 chr3 1107452 1107588 -216929570 + MIR SINE MIR 3 149 -113 7157 45 7 6 chr3 1107621 1109291 -216927867 - L1PA4 LINE L1 -1 6154 4458 539 222 9 0 chr3 1109322 1109430 -216927728 - MER81 DNA DNA -5 109 1 349 203 212 25 chr3 1109950 1110068 -216927090 + L1ME4a LINE L1 5968 6107 -14 445 276 178 6 chr3 1110189 1110352 -216926806 + MIR SINE MIR 8 198 -64 1708 196 0 20 chr3 1110353 1110654 -216926504 + AluJb SINE Alu 1 295 -17 250 271 146 10 chr3 1110677 1110773 -216926385 + MIR SINE MIR 45 153 -55 414 271 113 26 chr3 1110790 1110941 -216926217 + MIR3 SINE MIR 34 197 -11 204 324 0 14 chr3 1111275 1111346 -216925812 + MIR3 SINE MIR 115 184 -24 183 365 149 0 chr3 1111824 1111931 -216925227 + MIR SINE MIR 20 142 -66 4180 202 27 3 chr3 1112178 1113081 -216924077 - L1P LINE L1 -5206 940 17 23 33 0 0 chr3 1113607 1113637 -216923521 + AT_rich Low_complexity Low_complexity 1 30 0 611 223 19 38 chr3 1114955 1115166 -216921992 + L1MA9 LINE L1 6068 6274 -38 2306 107 3 0 chr3 1115195 1115495 -216921663 + AluSp SINE Alu 3 303 -10 3083 47 0 0 chr3 1115689 1116071 -216921087 - L1PA4 LINE L1 -3 6152 5771 2208 46 3 0 chr3 1116071 1116354 -216920804 + L1P2 LINE L1 5439 5722 -433 7263 165 34 45 chr3 1118954 1119159 -216917999 - L1M2 LINE L1 -743 5403 5197 1967 144 3 0 chr3 1119159 1119444 -216917714 - AluSx SINE Alu -26 286 1 7263 165 34 45 chr3 1119444 1120506 -216916652 - L1M2 LINE L1 -949 5197 4222 2346 95 0 0 chr3 1120506 1120810 -216916348 + AluY SINE Alu 1 304 -7 7263 165 34 45 chr3 1120810 1121327 -216915831 - L1M2 LINE L1 -1924 4222 3701 3473 46 14 0 chr3 1121434 1121872 -216915286 + L1PA3 LINE L1 5711 6154 -1 284 82 20 0 chr3 1121872 1121921 -216915237 + L1MA1 LINE L1 6250 6299 -3 884 186 0 0 chr3 1121939 1122106 -216915052 + L1PA16 LINE L1 5812 5978 -188 338 75 0 19 chr3 1122116 1122169 -216914989 - MLT2A2 LTR ERVL 0 453 402 231 195 26 13 chr3 1122180 1122257 -216914901 + (TA)n Simple_repeat Simple_repeat 1 78 0 327 270 11 11 chr3 1122260 1122349 -216914809 + L1MC4 LINE L1 6614 6702 -1340 1204 163 31 16 chr3 1122350 1122608 -216914550 - MLT2A1 LTR ERVL -182 262 1 2189 107 28 0 chr3 1122608 1122962 -216914196 - HERVL-A1-A1 LTR ERVL 0 5654 5291 * 35681 91 15 9 chr3 1122961 1128035 -216909123 - HERVL-A1-A1 LTR ERVL -550 5104 1 2570 113 57 7 chr3 1128035 1128080 -216909078 - MLT2A1 LTR ERVL 0 444 403 396 0 0 0 chr3 1128080 1128124 -216909034 + (CA)n Simple_repeat Simple_repeat 2 45 0 2570 113 57 7 chr3 1128124 1128501 -216908657 - MLT2A1 LTR ERVL -41 403 1 719 221 6 6 chr3 1128508 1128666 -216908492 + L1PA16 LINE L1 5993 6150 -16 1440 274 61 27 chr3 1128681 1129691 -216907467 - L1M1 LINE L1 -3909 3656 2660 3450 217 44 13 chr3 1129840 1131175 -216905983 - L1M2 LINE L1 -682 5630 4244 264 398 53 9 chr3 1131293 1131519 -216905639 + L1M2 LINE L1 976 1211 -6355 266 367 8 8 chr3 1131723 1131851 -216905307 + L1PA13 LINE L1 1441 1568 -5271 322 378 41 78 chr3 1132273 1132567 -216904591 + L1M2 LINE L1 1564 1846 -5720 249 284 91 0 chr3 1132570 1132658 -216904500 + L1PA13 LINE L1 1472 1567 -5282 * 3796 238 36 56 chr3 1132652 1133793 -216903365 + L1PA13 LINE L1 1346 2549 -4300 684 200 9 0 chr3 1133793 1133908 -216903250 + FLAM_C SINE Alu 1 116 -17 3796 238 36 56 chr3 1133908 1134410 -216902748 + L1PA13 LINE L1 2549 3059 -3790 6692 243 73 16 chr3 1134431 1136164 -216900994 + L1 LINE L1 3284 5197 -1652 2013 136 60 26 chr3 1136164 1136516 -216900642 + THE1B LTR MaLR 1 364 0 6692 243 73 16 chr3 1136516 1137204 -216899954 + L1 LINE L1 5197 5844 -1005 2037 191 20 4 chr3 1137313 1137763 -216899395 + L1M2 LINE L1 2073 2529 -5036 1834 46 8 0 chr3 1137760 1137999 -216899159 - L1P1 LINE L1 -2461 3685 3445 * 12630 51 6 1 chr3 1137997 1140001 -216897157 + L1P1 LINE L1 3660 5672 -483 2653 212 17 11 chr3 1140101 1140813 -216896345 - L1 LINE L1 -2522 3806 3091 13044 32 0 15 chr3 1140813 1143193 -216893965 - L1PA3 LINE L1 0 6155 3798 5124 52 1 0 chr3 1143193 1143889 -216893269 + L1PA3 LINE L1 3104 3800 -2346 2480 182 24 42 chr3 1143886 1144507 -216892651 - L1 LINE L1 -3227 3101 2492 * 965 147 86 6 chr3 1144508 1144671 -216892487 - AluSp SINE Alu 0 313 138 3784 228 36 28 chr3 1144672 1146113 -216891045 - L1 LINE L1 -3819 2509 1054 808 213 0 37 chr3 1146113 1146277 -216890881 + FRAM SINE Alu 1 150 -26 408 111 0 49 chr3 1146286 1146367 -216890791 - L1 LINE L1 -4276 1052 976 501 280 0 8 chr3 1146368 1146500 -216890658 - L1 LINE L1 -5020 308 178 1692 203 41 19 chr3 1146746 1147269 -216889889 + L1M2c LINE L1 1457 1985 -4734 754 177 23 57 chr3 1349215 1349390 -216687768 + L1MC2 LINE L1 6171 6339 -5 182 219 0 0 chr3 1349769 1349801 -216687357 + MIR SINE MIR 159 190 -72 331 324 19 9 chr3 1351225 1351330 -216685828 - MIR3 SINE MIR -14 194 89 536 297 60 6 chr3 1354446 1354628 -216682530 + MIR SINE MIR 22 213 -49 508 209 0 0 chr3 1355018 1355131 -216682027 - L1MA4A LINE L1 0 6279 6044 * 2132 141 34 44 chr3 1355121 1355532 -216681626 - L1MA4A LINE L1 -182 6121 5715 282 282 19 19 chr3 1356778 1356881 -216680277 - MIR SINE MIR -70 138 36 306 230 135 48 chr3 1357326 1357452 -216679706 - MER117 DNA MER1_type -60 137 1 321 260 114 16 chr3 1358912 1359035 -216678123 + MIR SINE MIR 15 149 -113 510 250 147 6 chr3 1359403 1359559 -216677599 + MER5A DNA MER1_type 9 186 -3 314 317 169 6 chr3 1360981 1361164 -216675994 + MIR SINE MIR 1 213 -49 4127 185 127 155 chr3 1361253 1362219 -216674939 + L1MC4 LINE L1 6340 7332 -710 1348 159 4 17 chr3 1362219 1362458 -216674700 + AluSq SINE Alu 1 236 -77 4127 185 127 155 chr3 1362458 1362891 -216674267 + L1MC4 LINE L1 7332 7926 -116 279 0 0 0 chr3 1362891 1362922 -216674236 + (TG)n Simple_repeat Simple_repeat 2 32 0 4127 185 127 155 chr3 1362922 1363036 -216674122 + L1MC4 LINE L1 7926 8042 0 510 307 42 16 chr3 1363298 1363487 -216673671 - MIR SINE MIR -22 240 47 298 308 183 23 chr3 1364997 1365260 -216671898 + L2 LINE L2 2661 2965 -349 240 304 14 0 chr3 1365416 1365485 -216671673 + L2 LINE L2 3195 3264 -8 1708 171 10 3 chr3 1366570 1366868 -216670290 + AluJo SINE Alu 1 300 -12 384 273 132 57 chr3 1366981 1367208 -216669950 - L1ME LINE L1 -331 5790 5547 524 251 134 67 chr3 1368090 1368313 -216668845 + MIR SINE MIR 24 261 -1 517 269 60 7 chr3 1368715 1368864 -216668294 + MIR3 SINE MIR 37 193 -15 342 184 87 0 chr3 1369248 1369351 -216667807 - L1ME4a LINE L1 -2 6119 6008 820 335 67 23 chr3 1369487 1369962 -216667196 - L1ME4a LINE L1 -307 5814 5319 487 262 48 12 chr3 1370529 1370700 -216666458 + MIR SINE MIR 10 184 -69 263 247 56 34 chr3 1370759 1370848 -216666310 + L2 LINE L2 3153 3243 -29 423 288 42 8 chr3 1371374 1371492 -216665666 - MIR SINE MIR -40 222 101 898 289 100 22 chr3 1373433 1373842 -216663316 + MLT1K LTR MaLR 144 584 -4 2043 106 3 13 chr3 1374736 1375038 -216662120 + AluSx SINE Alu 1 299 -13 1707 142 184 6 chr3 1375604 1375963 -216661195 + MSTA LTR MaLR 4 426 -2 1814 143 10 22 chr3 1376031 1376367 -216660791 - AluSx SINE Alu 0 332 1 537 252 41 0 chr3 1376671 1376818 -216660340 - MER103 DNA DNA -12 154 2 1946 141 0 20 chr3 1377099 1377426 -216659732 - AluSx SINE Alu 0 312 1 337 305 108 89 chr3 1378645 1378914 -216658244 + L2 LINE L2 2914 3187 -85 233 304 180 12 chr3 1379680 1379818 -216657340 - MIR SINE MIR -44 164 7 3565 199 36 26 chr3 1379819 1380750 -216656408 - L1ME1 LINE L1 -32 6134 5196 716 186 127 56 chr3 1380900 1381239 -216655919 + L1MC5 LINE L1 7565 7927 -34 223 309 0 37 chr3 1382103 1382184 -216654974 - MIR SINE MIR -100 108 31 491 329 7 0 chr3 1383335 1383472 -216653686 + MIR3 SINE MIR 30 167 -41 303 215 114 25 chr3 1385073 1385152 -216652006 - MIR3 SINE MIR -9 199 114 285 216 135 0 chr3 1385430 1385504 -216651654 + L1MC5 LINE L1 7808 7891 -70 2238 203 67 54 chr3 1385994 1386550 -216650608 + MLT1F1 LTR MaLR 1 563 -4 1809 190 103 38 chr3 1386559 1387033 -216650125 + MLT1D LTR MaLR 1 505 0 2015 146 33 9 chr3 1387296 1387625 -216649533 + MER1B DNA MER1_type 1 337 0 277 263 140 9 chr3 1388581 1388695 -216648463 - MIR3 SINE MIR -43 165 37 2225 110 0 0 chr3 1388990 1389300 -216647858 + AluSg SINE Alu 1 310 0 1862 123 6 43 chr3 1391171 1391495 -216645663 - AluSx SINE Alu 0 312 1 23 0 0 0 chr3 1391495 1391518 -216645640 + AT_rich Low_complexity Low_complexity 1 23 0 701 117 0 0 chr3 1391542 1391645 -216645513 - AluSg/x SINE Alu -2 310 208 751 237 72 10 chr3 1391729 1391923 -216645235 + MER3 DNA MER1_type 3 208 -1 378 327 31 25 chr3 1393088 1393247 -216643911 + MIR3 SINE MIR 36 195 -13 343 250 92 58 chr3 1393631 1393751 -216643407 + MIR SINE MIR 25 148 -114 1977 106 10 51 chr3 1393998 1394309 -216642849 - AluSx SINE Alu -14 298 1 22 0 0 0 chr3 1394319 1394341 -216642817 + AT_rich Low_complexity Low_complexity 1 22 0 366 302 82 80 chr3 1394344 1394908 -216642250 + L2 LINE L2 2702 3272 0 300 230 40 14 chr3 1396399 1396473 -216640685 - MER117 DNA MER1_type -78 119 44 392 241 66 99 chr3 1396800 1396918 -216640240 - MIR SINE MIR -6 256 147 1836 147 3 3 chr3 1396918 1397204 -216639954 - AluJb SINE Alu -23 289 4 392 241 66 99 chr3 1397204 1397297 -216639861 - MIR SINE MIR -115 147 52 630 262 126 19 chr3 1398676 1398890 -216638268 - MIR SINE MIR -12 250 14 441 39 0 0 chr3 1398983 1399035 -216638123 + MADE1 DNA Mariner 2 53 -27 413 57 0 0 chr3 1399206 1399259 -216637899 - MADE1 DNA Mariner -27 53 1 2032 99 31 7 chr3 1402699 1402991 -216634167 + AluSg SINE Alu 1 299 -11 570 279 132 6 chr3 1404621 1404905 -216632253 + L1MC4a LINE L1 5561 5805 -316 185 319 0 0 chr3 1406003 1406072 -216631086 + L2 LINE L2 3195 3263 -9 256 284 68 0 chr3 1407732 1407806 -216629352 + L2 LINE L2 3008 3086 -186 358 219 289 0 chr3 1409295 1409409 -216627749 + MIR SINE MIR 8 154 -108 187 209 0 0 chr3 1409570 1409613 -216627545 - L2 LINE L2 -1 3312 3270 2005 115 34 0 chr3 1409874 1410170 -216626988 + AluSx SINE Alu 6 311 -1 234 162 0 0 chr3 1410841 1410878 -216626280 + MIR SINE MIR 113 149 -59 289 247 39 13 chr3 1410969 1411046 -216626112 - MIR SINE MIR -28 234 156 * 741 288 14 9 chr3 1411044 1411259 -216625899 + MIR SINE MIR 5 220 -42 1205 168 72 50 chr3 1411262 1411524 -216625634 + AluJo SINE Alu 7 274 -38 262 271 0 0 chr3 1411548 1411607 -216625551 + MIR SINE MIR 204 262 0 918 155 94 75 chr3 1411637 1411850 -216625308 + MER20 DNA MER1_type 1 217 -2 207 0 0 0 chr3 1413981 1414004 -216623154 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 705 118 0 0 chr3 1414020 1414130 -216623028 + (TCCA)n Simple_repeat Simple_repeat 1 110 0 513 331 118 10 chr3 1414377 1414691 -216622467 + L2 LINE L2 2966 3313 0 4086 84 20 32 chr3 1415700 1416297 -216620861 - L1PA10 LINE L1 -3 6165 5576 357 339 0 0 chr3 1416310 1416419 -216620739 + MIR SINE MIR 7 115 -147 588 224 109 21 chr3 1416561 1416753 -216620405 + MIR SINE MIR 1 209 -53 252 186 0 34 chr3 1416839 1416898 -216620260 + FLAM_A SINE Alu 75 131 -2 2342 132 71 0 chr3 1417543 1417936 -216619222 + L1PA16 LINE L1 5741 6161 -5 519 217 32 106 chr3 1417936 1418057 -216619101 + L1ME2 LINE L1 5964 6066 -98 1804 194 77 58 chr3 1418057 1418553 -216618605 + MLT1D LTR MaLR 1 505 0 519 217 32 106 chr3 1418553 1418637 -216618521 + L1ME2 LINE L1 6066 6155 -9 229 277 11 96 chr3 1418857 1418951 -216618207 - MIR3 SINE MIR -41 167 79 403 163 12 12 chr3 1419494 1419574 -216617584 - MIR3 SINE MIR -47 161 82 471 298 7 28 chr3 1420208 1420349 -216616809 - MIR3 SINE MIR -61 147 10 810 241 82 0 chr3 1421296 1421516 -216615642 - MIR SINE MIR -17 245 8 427 326 7 28 chr3 1421899 1422040 -216615118 + MIR3 SINE MIR 10 147 -61 2671 83 0 0 chr3 1422393 1422744 -216614414 + L1PA14 LINE L1 5811 6161 0 815 129 0 0 chr3 1423540 1423664 -216613494 + FLAM_C SINE Alu 11 134 -9 189 0 0 0 chr3 1423878 1423899 -216613259 + (A)n Simple_repeat Simple_repeat 1 21 0 240 289 72 40 chr3 1425108 1425260 -216611898 + MIR SINE MIR 72 228 -34 531 282 62 66 chr3 1425948 1426253 -216610905 + L2 LINE L2 2950 3253 -19 608 233 0 0 chr3 1426271 1426387 -216610771 + FLAM_A SINE Alu 1 116 -17 23 0 0 0 chr3 1426909 1426932 -216610226 + AT_rich Low_complexity Low_complexity 1 23 0 189 107 0 0 chr3 1428314 1428342 -216608816 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 412 195 114 57 chr3 1430837 1430960 -216606198 + MIR3 SINE MIR 10 139 -69 371 313 9 0 chr3 1431691 1431806 -216605352 + MIR SINE MIR 55 170 -92 203 304 11 76 chr3 1432253 1432345 -216604813 - MIR SINE MIR -19 243 158 216 267 78 43 chr3 1432353 1432469 -216604689 - L2 LINE L2 -3 3269 3150 184 222 44 0 chr3 1432867 1432912 -216604246 - L2 LINE L2 -667 2647 2601 259 341 12 0 chr3 1432959 1433044 -216604114 + MIR SINE MIR 8 93 -169 396 316 100 40 chr3 1433101 1433500 -216603658 - L2 LINE L2 -785 2529 2107 858 165 15 17 chr3 1433859 1434208 -216602950 + GA-rich Low_complexity Low_complexity 1 348 0 818 250 18 14 chr3 1434411 1434631 -216602527 - MER58A DNA MER1_type -3 221 1 2029 91 0 4 chr3 1434939 1435254 -216601904 + AluSx SINE Alu 7 320 0 185 105 0 53 chr3 1435878 1435916 -216601242 + (GGAAA)n Simple_repeat Simple_repeat 5 40 0 369 43 0 0 chr3 1436017 1436064 -216601094 + MADE1 DNA Mariner 34 80 0 31 0 0 0 chr3 1436278 1436309 -216600849 + AT_rich Low_complexity Low_complexity 1 31 0 764 174 0 0 chr3 1436312 1436433 -216600725 + FLAM_A SINE Alu 2 122 -11 408 247 33 60 chr3 1436745 1436895 -216600263 - MIR SINE MIR -89 173 28 1112 269 128 39 chr3 1438884 1439410 -216597748 + MLT1H1 LTR MaLR 1 548 -5 185 294 39 0 chr3 1439463 1439514 -216597644 + MIR SINE MIR 77 129 -133 473 178 0 0 chr3 1439533 1439606 -216597552 + MER2 DNA MER2_type 273 345 0 455 253 58 93 chr3 1440765 1440842 -216596316 - L1ME3 LINE L1 0 6162 6084 2074 132 21 6 chr3 1440842 1441175 -216595983 - L1PA13 LINE L1 0 6163 5826 455 253 58 93 chr3 1441175 1441322 -216595836 - L1ME3 LINE L1 -78 6084 5946 537 323 12 6 chr3 1442572 1442739 -216594419 + MER91A DNA MER1_type 2 169 -27 328 85 0 0 chr3 1442813 1442860 -216594298 + L1MB7 LINE L1 6130 6176 -8 311 259 0 0 chr3 1443407 1443465 -216593693 - L2 LINE L2 0 3272 3215 384 293 173 42 chr3 1443945 1444136 -216593022 - MIR SINE MIR -3 259 44 193 211 193 0 chr3 1444376 1444433 -216592725 - L2 LINE L2 -1 3271 3204 186 227 0 91 chr3 1444604 1444670 -216592488 + L2 LINE L2 2997 3056 -216 374 298 38 15 chr3 1445348 1445479 -216591679 + MIR SINE MIR 117 250 -12 436 241 20 79 chr3 1446589 1446792 -216590366 + L1MC5 LINE L1 7737 7927 -34 441 0 0 0 chr3 1448649 1448698 -216588460 + (CA)n Simple_repeat Simple_repeat 2 50 0 186 43 0 0 chr3 1448771 1448794 -216588364 + (CA)n Simple_repeat Simple_repeat 2 24 0 183 42 0 0 chr3 1448829 1448853 -216588305 + (T)n Simple_repeat Simple_repeat 1 24 0 619 242 124 0 chr3 1449732 1449885 -216587273 - MIR SINE MIR -25 237 66 2150 76 0 10 chr3 1450330 1450619 -216586539 + L1MA1 LINE L1 6016 6301 -1 236 350 12 0 chr3 1450676 1450756 -216586402 + MIR SINE MIR 69 149 -113 289 235 41 20 chr3 1450840 1450938 -216586220 + L1ME3 LINE L1 5556 5655 -466 364 300 111 37 chr3 1451000 1451190 -216585968 + L1ME3 LINE L1 5796 5999 -122 1814 132 28 28 chr3 1451194 1451483 -216585675 + AluJo SINE Alu 1 289 -23 26 0 0 0 chr3 1451550 1451576 -216585582 + AT_rich Low_complexity Low_complexity 1 26 0 2123 126 7 0 chr3 1452740 1453033 -216584125 + AluSx SINE Alu 1 295 -17 21 57 0 0 chr3 1453085 1453120 -216584038 + AT_rich Low_complexity Low_complexity 1 35 0 30 59 0 0 chr3 1455578 1455629 -216581529 + AT_rich Low_complexity Low_complexity 1 51 0 273 366 12 30 chr3 1455760 1455894 -216581264 + MIR3 SINE MIR 23 155 -53 2202 120 3 0 chr3 1455894 1456203 -216580955 - AluSx SINE Alu -2 310 1 273 366 12 30 chr3 1456203 1456232 -216580926 + MIR3 SINE MIR 155 183 -25 249 89 44 0 chr3 1457859 1457904 -216579254 - LTR66 LTR ERVL -170 440 394 258 56 0 0 chr3 1457926 1457962 -216579196 + (TA)n Simple_repeat Simple_repeat 2 37 0 303 272 132 0 chr3 1458842 1458956 -216578202 + L2 LINE L2 3144 3272 0 550 202 11 0 chr3 1458992 1459094 -216578064 + L1ME3 LINE L1 5998 6107 -55 260 283 22 43 chr3 1460438 1460530 -216576628 + MIR SINE MIR 40 129 -79 28 0 0 0 chr3 1463027 1463055 -216574103 + AT_rich Low_complexity Low_complexity 1 28 0 2333 94 0 0 chr3 1463213 1463499 -216573659 - AluSx SINE Alu -26 286 1 553 274 70 46 chr3 1463853 1464094 -216573064 + MIR SINE MIR 6 252 -10 207 0 0 0 chr3 1467881 1467904 -216569254 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2305 111 3 0 chr3 1468651 1468957 -216568201 - AluSx SINE Alu -5 307 1 240 35 0 0 chr3 1469200 1469229 -216567929 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 321 219 73 57 chr3 1469969 1470092 -216567066 + L1ME4a LINE L1 5986 6110 -11 315 203 106 57 chr3 1471559 1471682 -216565476 - MER113 DNA MER1_type? -175 346 218 197 290 17 137 chr3 1471710 1472010 -216565148 + L2 LINE L2 2963 3226 -46 260 294 0 0 chr3 1472120 1472188 -216564970 - MIR SINE MIR 0 262 195 1571 246 86 21 chr3 1472189 1472626 -216564532 + MLT1G1 LTR MaLR 13 436 -106 692 201 71 33 chr3 1472700 1472884 -216564274 - MIR SINE MIR -59 203 13 243 223 134 45 chr3 1473006 1473118 -216564040 - MER113 DNA MER1_type? -182 339 218 2056 211 2 29 chr3 1474209 1474654 -216562504 + L1MD3 LINE L1 7554 7986 -9 1372 162 81 56 chr3 1475319 1475460 -216561698 - L1PA16 LINE L1 0 6166 6030 2422 77 3 0 chr3 1475460 1475757 -216561401 - AluSp SINE Alu -15 298 1 1372 162 81 56 chr3 1475757 1475899 -216561259 - L1PA16 LINE L1 -136 6030 5876 345 198 146 0 chr3 1476578 1476674 -216560484 + MER103 DNA DNA 6 115 -51 196 347 0 32 chr3 1476755 1476850 -216560308 + MIR3 SINE MIR 10 101 -107 508 260 68 40 chr3 1477318 1477495 -216559663 + MIR3 SINE MIR 14 195 -13 21 57 0 0 chr3 1478003 1478038 -216559120 + AT_rich Low_complexity Low_complexity 1 35 0 215 327 114 27 chr3 1478066 1478286 -216558872 - MIR SINE MIR -4 258 20 282 275 99 0 chr3 1478518 1478609 -216558549 - MIR SINE MIR -21 241 142 2375 132 31 14 chr3 1478820 1479177 -216557981 + THE1B LTR MaLR 2 364 0 215 291 104 97 chr3 1479456 1479590 -216557568 - L2 LINE L2 0 3272 3138 257 258 0 15 chr3 1479596 1479662 -216557496 - MIR SINE MIR -8 254 190 1924 152 0 26 chr3 1480519 1480821 -216556337 - AluSx SINE Alu -18 294 1 736 243 77 0 chr3 1481231 1481400 -216555758 + MER58A DNA MER1_type 27 208 -16 242 262 16 0 chr3 1481640 1481701 -216555457 + HsTC2 DNA Tc2 13 74 -1824 2265 132 0 0 chr3 1482138 1482442 -216554716 + AluSx SINE Alu 1 304 -8 342 0 0 0 chr3 1482536 1482574 -216554584 + (CA)n Simple_repeat Simple_repeat 2 39 0 303 250 214 31 chr3 1482897 1483093 -216554065 + L1ME3 LINE L1 5010 5241 -905 527 277 98 94 chr3 1483144 1483280 -216553878 + L1ME3 LINE L1 5317 5451 -719 2437 179 37 16 chr3 1483280 1483789 -216553369 + L1MB8 LINE L1 5658 6177 -1 527 277 98 94 chr3 1483789 1484503 -216552655 + L1ME3 LINE L1 5451 6170 0 442 269 31 8 chr3 1484567 1484697 -216552461 + L1MC4a LINE L1 5396 5528 -2280 393 275 123 34 chr3 1484780 1485016 -216552142 + L1MC4a LINE L1 5779 6035 -1773 1823 173 49 0 chr3 1485088 1485418 -216551740 + MER7A DNA MER2_type 3 346 0 266 206 32 58 chr3 1485444 1485599 -216551559 + (TATAA)n Simple_repeat Simple_repeat 4 154 0 2236 101 3 13 chr3 1486753 1487051 -216550107 - AluSp SINE Alu -18 295 1 495 331 18 0 chr3 1487384 1487553 -216549605 + MIR SINE MIR 89 260 -2 210 323 21 0 chr3 1487561 1487657 -216549501 - MIR SINE MIR -65 197 100 1653 147 45 18 chr3 1487727 1488013 -216549145 - AluJo SINE Alu -11 301 8 1399 234 113 63 chr3 1488917 1489604 -216547554 - L1ME3 LINE L1 0 6162 5275 2093 134 7 0 chr3 1489604 1489895 -216547263 - AluSx SINE Alu -19 293 1 1399 234 113 63 chr3 1489895 1490246 -216546912 - L1ME3 LINE L1 -887 5275 4943 1259 169 49 4 chr3 1490282 1490507 -216546651 - MER46A DNA MER2_type 0 236 2 504 325 35 4 chr3 1490579 1490810 -216546348 + L1MC4a LINE L1 5683 5920 -1888 634 164 102 8 chr3 1491707 1491835 -216545323 + FLAM_C SINE Alu 2 141 -2 205 159 91 0 chr3 1492058 1492102 -216545056 + MIR SINE MIR 104 151 -111 660 297 14 5 chr3 1492361 1492573 -216544585 + MIR SINE MIR 8 221 -41 501 248 55 3 chr3 1492613 1492807 -216544351 - MER58 DNA MER1_type -2 2418 1 397 283 29 35 chr3 1493715 1493888 -216543270 + MIR SINE MIR 79 250 -12 234 259 71 0 chr3 1493977 1494062 -216543096 + MIR SINE MIR 103 193 -69 229 309 37 0 chr3 1495336 1495417 -216541741 - MIR SINE MIR -176 86 3 719 215 0 0 chr3 1496861 1496982 -216540176 - FLAM_A SINE Alu -12 121 1 468 259 105 49 chr3 1497404 1497843 -216539315 + MLT1H1 LTR MaLR 48 542 -13 306 0 0 0 chr3 1498231 1498265 -216538893 + (CA)n Simple_repeat Simple_repeat 2 35 0 237 33 0 0 chr3 1498267 1498297 -216538861 + (TC)n Simple_repeat Simple_repeat 1 30 0 2724 179 24 12 chr3 1500145 1500647 -216536511 + MLT2B2 LTR ERVL 1 508 -7 195 330 174 0 chr3 1501307 1501416 -216535742 + L2 LINE L2 3184 3311 -2 180 125 0 0 chr3 1501570 1501602 -216535556 + (TAAAAA)n Simple_repeat Simple_repeat 4 35 0 466 274 42 42 chr3 1502001 1502308 -216534850 + L2 LINE L2 1534 1840 -1474 836 278 107 41 chr3 1502311 1502703 -216534455 + L2 LINE L2 2895 3312 -1 1687 197 0 16 chr3 1503521 1503830 -216533328 - AluJo SINE Alu -8 304 1 237 191 59 29 chr3 1503911 1503979 -216533179 + MIR SINE MIR 80 149 -113 256 263 0 85 chr3 1504398 1504516 -216532642 + L1MC5 LINE L1 7806 7913 -48 412 264 175 41 chr3 1505730 1505976 -216531182 + L2 LINE L2 3033 3311 -2 2319 76 0 14 chr3 1506008 1506321 -216530837 + AluY SINE Alu 1 311 0 354 273 124 36 chr3 1506866 1507060 -216530098 + Tigger8 DNA MER2_type 57 267 -399 433 278 124 27 chr3 1507467 1507766 -216529392 + L1ME LINE L1 5372 5699 -471 30 0 0 0 chr3 1508120 1508150 -216529008 + AT_rich Low_complexity Low_complexity 1 30 0 608 253 104 0 chr3 1508367 1508549 -216528609 + L1MC4 LINE L1 6519 6719 -1323 327 300 92 0 chr3 1508560 1508680 -216528478 - MIR SINE MIR -96 166 36 1013 198 23 14 chr3 1509326 1509543 -216527615 + MER20 DNA MER1_type 1 219 0 296 259 69 17 chr3 1510638 1510754 -216526404 + MIR SINE MIR 91 212 -50 1797 108 116 0 chr3 1511346 1511604 -216525554 + AluSg SINE Alu 1 288 -22 222 274 0 0 chr3 1512809 1512860 -216524298 - MIR SINE MIR -17 245 195 1559 248 86 21 chr3 1512861 1513298 -216523860 + MLT1G1 LTR MaLR 13 436 -106 650 186 68 37 chr3 1513372 1513533 -216523625 - MIR SINE MIR -59 203 38 554 225 23 0 chr3 1513660 1513833 -216523325 + GA-rich Low_complexity Low_complexity 4 180 0 351 0 0 0 chr3 1515569 1515608 -216521550 + (TA)n Simple_repeat Simple_repeat 2 40 0 2243 110 7 7 chr3 1515629 1515939 -216521219 - AluSx SINE Alu 0 312 3 930 198 35 30 chr3 1515939 1516136 -216521022 - MER20 DNA MER1_type -18 201 4 215 206 16 48 chr3 1516358 1516421 -216520737 - MER5B DNA MER1_type -2 176 116 3851 151 23 33 chr3 1516474 1517205 -216519953 + LTR8A LTR ERV1 1 724 -3 301 307 0 0 chr3 1517242 1517330 -216519828 - MER5A DNA MER1_type -101 88 1 447 146 361 8 chr3 1517357 1517487 -216519671 - MER5A DNA MER1_type 0 189 14 2817 100 41 30 chr3 1517813 1518273 -216518885 + MER4C LTR ERV1 1 465 0 1123 230 125 71 chr3 1518925 1519409 -216517749 - L1MC4 LINE L1 -2 8040 7513 1737 122 68 32 chr3 1519409 1519688 -216517470 + AluSg SINE Alu 1 289 -21 1123 230 125 71 chr3 1519688 1519825 -216517333 - L1MC4 LINE L1 -529 7513 7385 2665 127 39 18 chr3 1520506 1520948 -216516210 + L1PA16 LINE L1 5335 5785 -381 2170 105 0 3 chr3 1520948 1521242 -216515916 + AluSc SINE Alu 17 309 0 1037 96 32 26 chr3 1521275 1521431 -216515727 + L1PA16 LINE L1 6010 6166 0 4302 185 42 34 chr3 1521649 1522109 -216515049 - L1MB7 LINE L1 -16 6168 5713 1634 179 7 30 chr3 1522109 1522405 -216514753 - AluJb SINE Alu -7 305 17 4302 185 42 34 chr3 1522405 1523143 -216514015 - L1MB7 LINE L1 -471 5713 4959 1923 125 68 0 chr3 1523143 1523422 -216513736 - AluJb SINE Alu -14 298 1 4302 185 42 34 chr3 1523422 1523558 -216513600 - L1MB7 LINE L1 -1225 4959 4825 267 93 0 0 chr3 1524131 1524174 -216512984 + (CA)n Simple_repeat Simple_repeat 2 44 0 589 281 50 43 chr3 1524490 1524793 -216512365 + L1ME1 LINE L1 5809 6113 -53 811 294 37 25 chr3 1525051 1525374 -216511784 - MER102b DNA MER1_type -6 335 9 294 326 7 15 chr3 1525396 1525531 -216511627 + MIR SINE MIR 56 189 -73 215 301 137 0 chr3 1525657 1525730 -216511428 + L3 LINE CR1 1026 1108 -469 321 120 67 53 chr3 1525886 1525961 -216511197 + MER103 DNA DNA 15 90 -76 1972 147 0 7 chr3 1526029 1526321 -216510837 - AluJb SINE Alu -22 290 1 534 306 17 69 chr3 1527348 1527636 -216509522 + Charlie8 DNA MER1_type 1 273 -2144 209 264 92 0 chr3 1528804 1528891 -216508267 + L2 LINE L2 1854 1948 -1366 974 252 58 13 chr3 1529109 1529434 -216507724 + MSTA LTR MaLR 1 428 0 374 280 99 33 chr3 1529450 1529632 -216507526 - MIR SINE MIR -66 196 3 680 249 103 80 chr3 1529688 1530119 -216507039 + MLT1J LTR MaLR 1 441 -70 764 278 48 44 chr3 1530119 1530389 -216506769 - LTR16A1 LTR ERVL 0 457 187 511 284 116 71 chr3 1531581 1532045 -216505113 + MLT1K LTR MaLR 5 489 -99 5934 73 11 14 chr3 1533050 1533844 -216503314 + L1PA14 LINE L1 5369 6160 -1 566 181 124 0 chr3 1533864 1534055 -216503103 + FLAM_A SINE Alu 1 204 0 945 292 41 62 chr3 1534175 1534641 -216502517 - L2 LINE L2 -2 3311 2856 244 262 16 0 chr3 1534710 1534771 -216502387 - MER5B DNA MER1_type -66 112 51 230 257 18 62 chr3 1534910 1535023 -216502135 - L2 LINE L2 -608 2706 2599 355 259 18 36 chr3 1535052 1535164 -216501994 - MER5A DNA MER1_type -63 126 17 584 238 130 11 chr3 1535180 1535365 -216501793 - MER112 DNA MER1_type 0 260 54 675 175 9 0 chr3 1535407 1535521 -216501637 - FLAM_A SINE Alu -18 115 1 962 303 98 18 chr3 1535587 1536138 -216501020 - L2 LINE L2 -718 2596 2002 2203 114 10 0 chr3 1536993 1537292 -216499866 + AluSx SINE Alu 1 302 -10 308 209 15 0 chr3 1537305 1537372 -216499786 + MER5A DNA MER1_type 26 93 -96 252 308 158 0 chr3 1537467 1537600 -216499558 - MER5B DNA MER1_type -24 154 1 711 163 163 0 chr3 1538084 1538225 -216498933 + L1PA16 LINE L1 5876 6039 -127 2207 92 14 0 chr3 1538226 1538509 -216498649 + AluSx SINE Alu 1 287 -25 1896 82 58 0 chr3 1538808 1539051 -216498107 + AluSp SINE Alu 1 257 -56 219 125 0 0 chr3 1539053 1539093 -216498065 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 2347 69 0 16 chr3 1539310 1539613 -216497545 + AluY SINE Alu 1 298 -13 334 261 98 83 chr3 1539644 1539908 -216497250 + L1ME LINE L1 5559 5680 -441 2077 103 0 15 chr3 1539912 1540184 -216496974 + AluSq SINE Alu 1 268 -45 1731 158 14 11 chr3 1540455 1540740 -216496418 + AluJb SINE Alu 13 298 -14 2257 105 7 3 chr3 1541719 1542025 -216495133 + AluSc SINE Alu 1 307 -2 693 270 60 36 chr3 1542265 1542598 -216494560 + MER102b DNA MER1_type 1 341 0 422 360 23 6 chr3 1542821 1542993 -216494165 + MER20B DNA MER1_type 55 229 -554 699 186 8 8 chr3 1543004 1543128 -216494030 + AluJb SINE Alu 137 260 -52 453 294 5 33 chr3 1543130 1543314 -216493844 + MER20B DNA MER1_type 232 410 -373 4348 127 78 45 chr3 1543320 1544068 -216493090 - Ricksha DNA DNA -7 3239 2457 2048 113 3 7 chr3 1544068 1544393 -216492765 + AluSx SINE Alu 1 324 0 4348 127 78 45 chr3 1544393 1544505 -216492653 - Ricksha DNA DNA -789 2457 2350 544 187 19 0 chr3 1544532 1544639 -216492519 - Ricksha DNA DNA -1927 119 11 720 237 179 24 chr3 1544646 1544975 -216492183 + MER20B DNA MER1_type 398 777 -6 701 304 77 23 chr3 1545336 1545727 -216491431 - L2 LINE L2 0 3313 2902 290 0 75 0 chr3 1545727 1545767 -216491391 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 229 331 0 32 chr3 1546158 1546282 -216490876 - L2 LINE L2 -15 3257 3138 203 288 38 0 chr3 1546463 1546543 -216490615 - MIR SINE MIR -114 148 66 808 298 25 0 chr3 1546588 1546830 -216490328 - MIR SINE MIR -2 260 13 1318 144 9 5 chr3 1547463 1547678 -216489480 - AluSg/x SINE Alu -2 310 95 2085 130 0 7 chr3 1547834 1548127 -216489031 + AluSx SINE Alu 1 291 -21 860 248 148 18 chr3 1548252 1548643 -216488515 + Charlie7 DNA MER1_type 275 716 -1896 225 0 0 0 chr3 1548745 1548770 -216488388 + (CA)n Simple_repeat Simple_repeat 2 26 0 954 131 15 0 chr3 1548794 1548931 -216488227 - FAM SINE Alu -15 170 32 2556 60 0 3 chr3 1549098 1549400 -216487758 + AluY SINE Alu 1 301 -10 2414 89 0 3 chr3 1550261 1550563 -216486595 - AluSx SINE Alu -6 306 6 264 243 126 9 chr3 1552007 1552118 -216485040 + L2 LINE L2 3188 3311 -2 2068 89 33 0 chr3 1552242 1552537 -216484621 + AluSc SINE Alu 1 304 0 2448 82 0 3 chr3 1552542 1552845 -216484313 + AluSc SINE Alu 1 302 -7 409 328 95 25 chr3 1552845 1553400 -216483758 - L2 LINE L2 -25 3288 2695 2433 126 67 12 chr3 1553417 1553823 -216483335 + MSTA LTR MaLR 1 428 0 296 248 33 74 chr3 1553835 1553964 -216483194 - L2 LINE L2 -904 2410 2287 180 0 0 0 chr3 1554254 1554274 -216482884 + (A)n Simple_repeat Simple_repeat 1 20 0 412 309 129 36 chr3 1554433 1554821 -216482337 + HAL1 LINE L1 239 662 -1845 359 280 40 30 chr3 1554821 1554921 -216482237 + MER58 DNA MER1_type 13 113 -228 813 168 4 0 chr3 1555095 1555342 -216481816 + GA-rich Low_complexity Low_complexity 1 248 0 231 234 9 27 chr3 1555356 1555467 -216481691 + G-rich Low_complexity Low_complexity 3 111 0 1392 266 133 61 chr3 1555482 1556727 -216480431 + HAL1 LINE L1 1123 2465 -42 1038 137 28 11 chr3 1556727 1556909 -216480249 - L1MB5 LINE L1 -9 6165 5981 1392 266 133 61 chr3 1556909 1556949 -216480209 + HAL1 LINE L1 2465 2501 -6 1568 205 0 16 chr3 1556950 1557253 -216479905 - AluJb SINE Alu -14 298 1 1162 204 25 116 chr3 1557346 1557744 -216479414 + MLT1A1 LTR MaLR 4 365 0 326 273 78 19 chr3 1558014 1558168 -216478990 - MLT1J2 LTR MaLR -287 163 1 194 310 35 0 chr3 1558638 1558696 -216478462 + L2 LINE L2 3190 3249 -64 2383 97 3 3 chr3 1559278 1559589 -216477569 + AluSq SINE Alu 1 311 -2 416 208 40 94 chr3 1559867 1560016 -216477142 + LTR67 LTR ERVL 413 553 -4 559 329 27 4 chr3 1560332 1560557 -216476601 + MIR SINE MIR 32 261 -1 258 200 154 0 chr3 1560608 1560673 -216476485 + L1ME3 LINE L1 5795 5869 -293 1097 171 0 0 chr3 1560673 1560843 -216476315 - AluJb SINE Alu -14 298 129 825 225 56 70 chr3 1560848 1561174 -216475984 + L1ME3 LINE L1 5858 6164 -2 670 102 0 10 chr3 1561506 1561604 -216475554 + MER4A LTR ERV1 2 98 -566 2923 103 2 10 chr3 1561604 1562011 -216475147 + MER4A LTR ERV1 261 664 0 2179 119 0 0 chr3 1562046 1562348 -216474810 - AluSx SINE Alu -8 304 3 1739 153 14 21 chr3 1562474 1562761 -216474397 - AluJo SINE Alu -27 285 1 1851 176 0 3 chr3 1563006 1563308 -216473850 + AluJb SINE Alu 1 301 -11 855 152 0 0 chr3 1563358 1563490 -216473668 - AluSg/x SINE Alu -6 304 173 990 106 0 14 chr3 1563644 1563785 -216473373 - AluJo SINE Alu -157 155 17 371 319 71 18 chr3 1563787 1563956 -216473202 + MIR SINE MIR 84 261 -1 285 344 75 0 chr3 1564138 1564298 -216472860 - MIR SINE MIR -71 191 20 21 0 0 0 chr3 1564565 1564586 -216472572 + AT_rich Low_complexity Low_complexity 1 21 0 408 336 0 7 chr3 1564728 1564868 -216472290 + MIR3 SINE MIR 21 159 -49 188 227 23 0 chr3 1564883 1564927 -216472231 - L2 LINE L2 -15 3257 3213 308 265 219 20 chr3 1565520 1565826 -216471332 - L1MEc LINE L1 -4759 1687 1301 2288 107 0 0 chr3 1565830 1566121 -216471037 - AluSc SINE Alu -18 291 1 757 277 98 33 chr3 1566130 1566650 -216470508 - L1MEc LINE L1 -5029 1387 834 1056 150 48 0 chr3 1567324 1567491 -216469667 + FRAM SINE Alu 2 176 0 256 23 0 47 chr3 1567631 1567674 -216469484 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 1639 102 0 0 chr3 1567737 1567942 -216469216 - AluSx SINE Alu -107 205 1 526 301 116 39 chr3 1567950 1568338 -216468820 - MLT1L LTR MaLR -3 612 195 1363 208 17 24 chr3 1569000 1569294 -216467864 - AluJo SINE Alu -9 293 2 938 92 8 0 chr3 1569294 1569413 -216467745 - AluJo SINE Alu -176 136 17 336 175 0 0 chr3 1571379 1571442 -216465716 + CT-rich Low_complexity Low_complexity 1 63 0 1513 176 0 22 chr3 1572545 1572812 -216464346 + AluJo SINE Alu 49 309 -3 2695 158 85 81 chr3 1573993 1574626 -216462532 - MER21B LTR ERV1 0 863 228 2221 115 3 10 chr3 1574727 1575031 -216462127 + AluSx SINE Alu 2 303 -9 240 197 45 45 chr3 1575298 1575364 -216461794 + MIR SINE MIR 112 177 -85 601 148 101 177 chr3 1575445 1575682 -216461476 + MER20 DNA MER1_type 1 219 0 258 329 71 14 chr3 1575866 1576006 -216461152 + MIR3 SINE MIR 21 168 -40 2114 137 3 0 chr3 1577118 1577417 -216459741 - AluSx SINE Alu -12 300 1 341 231 44 0 chr3 1577996 1578087 -216459071 - MIR SINE MIR -72 190 96 887 290 78 38 chr3 1578089 1578610 -216458548 + L2 LINE L2 2748 3296 -17 1764 194 61 33 chr3 1578785 1579243 -216457915 - Charlie1b DNA MER1_type 0 523 53 198 0 0 0 chr3 1580380 1580402 -216456756 + (T)n Simple_repeat Simple_repeat 1 22 0 576 314 8 47 chr3 1581010 1581243 -216455915 - MIR SINE MIR -35 227 5 1818 165 3 20 chr3 1581437 1581734 -216455424 + AluJb SINE Alu 3 294 -18 734 288 129 39 chr3 1581780 1582477 -216454681 - L2 LINE L2 -7 3265 2494 491 292 29 95 chr3 1582484 1582864 -216454294 - L2 LINE L2 0 3272 2918 672 330 9 0 chr3 1583481 1583708 -216453450 - MIR SINE MIR -24 238 10 1243 188 111 30 chr3 1583918 1584189 -216452969 - AluJo SINE Alu -17 295 3 237 316 26 0 chr3 1584275 1584351 -216452807 + L3 LINE CR1 1499 1576 -1 356 278 90 0 chr3 1584602 1584746 -216452412 - MIR SINE MIR 0 262 106 270 215 96 44 chr3 1585547 1585682 -216451476 - L1ME4a LINE L1 0 6121 5980 2050 141 0 3 chr3 1585729 1586026 -216451132 + AluSx SINE Alu 1 296 -16 523 284 41 50 chr3 1586036 1586254 -216450904 + MIR SINE MIR 47 262 0 185 380 133 0 chr3 1587637 1587750 -216449408 + MIR3 SINE MIR 44 171 -37 1455 165 51 0 chr3 1588373 1588610 -216448548 + AluSx SINE Alu 36 284 -28 249 108 0 0 chr3 1588610 1588647 -216448511 + (CA)n Simple_repeat Simple_repeat 2 38 0 764 256 59 35 chr3 1588700 1589075 -216448083 + L1M4 LINE L1 2114 2497 -3649 2187 142 87 25 chr3 1589232 1589633 -216447525 - MSTC LTR MaLR -2 426 1 368 195 73 0 chr3 1589635 1589717 -216447441 - L1ME1 LINE L1 -50 6116 6029 459 252 57 69 chr3 1589747 1590167 -216446991 + L1M4 LINE L1 2616 3030 -3116 * 6386 82 28 8 chr3 1590165 1591033 -216446125 - L1PA10 LINE L1 -8 6160 5276 397 273 71 24 chr3 1591033 1591330 -216445828 + L1M4 LINE L1 2982 3292 -2854 1845 186 169 2 chr3 1591344 1591769 -216445389 - MLT1D LTR MaLR -9 496 1 607 278 87 20 chr3 1591814 1592113 -216445045 + L1M4 LINE L1 3371 3689 -2457 2574 57 0 16 chr3 1593469 1593785 -216443373 + AluY SINE Alu 1 311 0 1298 149 36 5 chr3 1594881 1595102 -216442056 + L1PB4 LINE L1 5929 6156 0 731 264 60 16 chr3 1595666 1595916 -216441242 - MIR SINE MIR -1 261 1 320 254 150 68 chr3 1596219 1596499 -216440659 - L3 LINE CR1 -42 1535 1233 2014 149 0 19 chr3 1596546 1596862 -216440296 + AluJb SINE Alu 1 310 -2 225 301 243 0 chr3 1596862 1596965 -216440193 + MER5A DNA MER1_type 62 189 0 264 278 213 0 chr3 1596980 1597088 -216440070 - L2 LINE L2 -1 3271 3141 839 287 5 0 chr3 1597145 1597361 -216439797 - MIR SINE MIR -22 240 24 425 278 79 90 chr3 1597394 1597872 -216439286 - L2 LINE L2 -219 3053 2591 227 209 30 15 chr3 1598102 1598169 -216438989 + MIR SINE MIR 105 172 -90 198 0 0 0 chr3 1598421 1598443 -216438715 + (TTG)n Simple_repeat Simple_repeat 1 22 0 1786 148 11 0 chr3 1598444 1598715 -216438443 - AluJo SINE Alu -38 274 1 745 224 56 5 chr3 1599198 1599394 -216437764 + MIR SINE MIR 2 207 -55 348 284 123 0 chr3 1600981 1601136 -216436022 - MIR3 SINE MIR -15 193 20 1577 178 11 3 chr3 1601742 1602029 -216435129 + AluJo SINE Alu 1 289 -23 213 254 0 18 chr3 1602390 1602445 -216434713 + L2 LINE L2 3217 3270 -2 400 264 92 12 chr3 1602472 1602635 -216434523 + MIR SINE MIR 86 261 -1 264 373 156 0 chr3 1603889 1604078 -216433080 - MIR SINE MIR -2 260 46 209 212 0 0 chr3 1604281 1604314 -216432844 - L2 LINE L2 -39 3233 3201 658 300 39 26 chr3 1604330 1604560 -216432598 - MIR SINE MIR -18 244 12 261 0 0 0 chr3 1604990 1605019 -216432139 + (A)n Simple_repeat Simple_repeat 1 29 0 2785 127 59 7 chr3 1605570 1606010 -216431148 + L1MA8 LINE L1 5829 6291 0 772 196 124 0 chr3 1606270 1606423 -216430735 + MER5B DNA MER1_type 4 175 -3 217 191 0 0 chr3 1606520 1606562 -216430596 + MIR SINE MIR 189 230 -32 23 0 0 0 chr3 1607123 1607146 -216430012 + AT_rich Low_complexity Low_complexity 1 23 0 273 247 27 55 chr3 1607186 1607259 -216429899 + MER5B DNA MER1_type 107 177 -1 1786 154 0 62 chr3 1607424 1607749 -216429409 - AluJb SINE Alu -7 305 1 328 241 12 36 chr3 1609066 1609149 -216428009 - MIR SINE MIR -121 141 61 2279 106 0 0 chr3 1609793 1610094 -216427064 + AluSc SINE Alu 1 301 -8 349 324 20 0 chr3 1610173 1610275 -216426883 + MIR3 SINE MIR 66 169 -39 697 148 0 113 chr3 1610387 1610529 -216426629 - FLAM_A SINE Alu -7 126 1 469 300 40 40 chr3 1611171 1611414 -216425744 + MIR SINE MIR 3 243 -19 3062 71 8 0 chr3 1612924 1613302 -216423856 + L1PA7 LINE L1 5774 6154 0 2342 116 0 0 chr3 1613336 1613647 -216423511 + AluSx SINE Alu 1 311 -1 186 43 0 0 chr3 1614565 1614588 -216422570 + (TCTCC)n Simple_repeat Simple_repeat 1 23 0 21 57 0 0 chr3 1617107 1617142 -216420016 + AT_rich Low_complexity Low_complexity 1 35 0 2477 64 0 0 chr3 1618846 1619144 -216418014 - AluY SINE Alu -13 298 1 409 287 149 37 chr3 1619796 1619984 -216417174 - MIR SINE MIR -27 235 27 213 209 0 23 chr3 1620549 1620592 -216416566 + (CA)n Simple_repeat Simple_repeat 1 42 0 299 295 215 34 chr3 1621610 1621759 -216415399 + MER5A DNA MER1_type 14 189 0 327 309 29 37 chr3 1622022 1622158 -216415000 + L2 LINE L2 3138 3272 0 194 254 28 56 chr3 1622235 1622306 -216414852 + MIR3 SINE MIR 126 194 -14 342 248 94 16 chr3 1622643 1622771 -216414387 + MER5A DNA MER1_type 34 179 -10 2026 153 3 0 chr3 1623033 1623334 -216413824 - AluJb SINE Alu -10 302 1 433 283 29 7 chr3 1623968 1624106 -216413052 - L1ME3A LINE L1 -8 6162 6022 1435 295 142 10 chr3 1625084 1625831 -216411327 - L2 LINE L2 -3 3310 2447 3880 173 6 6 chr3 1625836 1626500 -216410658 + L1MB2 LINE L1 5507 6170 -1 262 200 88 0 chr3 1626500 1626580 -216410578 + Charlie7 DNA MER1_type 637 723 -1889 1134 231 80 15 chr3 1626694 1627018 -216410140 - L2 LINE L2 -848 2466 2122 1784 143 37 10 chr3 1627439 1627733 -216409425 + AluJo SINE Alu 1 302 -10 197 108 27 0 chr3 1627735 1627772 -216409386 + GA-rich Low_complexity Low_complexity 3 40 0 434 251 168 72 chr3 1627824 1628170 -216408988 + MLT1H LTR MaLR 23 401 -148 26 64 0 0 chr3 1628433 1628480 -216408678 + AT_rich Low_complexity Low_complexity 1 47 0 25 51 0 0 chr3 1629723 1629762 -216407396 + AT_rich Low_complexity Low_complexity 1 39 0 1543 137 115 46 chr3 1629909 1630253 -216406905 + MSTA LTR MaLR 3 428 0 281 335 120 50 chr3 1630262 1630686 -216406472 + L2 LINE L2 2818 3271 -1 1781 159 14 7 chr3 1631138 1631434 -216405724 + AluJb SINE Alu 5 302 -10 805 258 60 1 chr3 1631857 1632083 -216405075 - MIR SINE MIR -6 256 20 372 43 0 0 chr3 1632394 1632440 -216404718 + (TG)n Simple_repeat Simple_repeat 2 47 0 270 319 14 21 chr3 1633820 1633961 -216403197 + MIR SINE MIR 113 252 -10 281 0 0 0 chr3 1634139 1634170 -216402988 + U7 snRNA snRNA 2 32 -31 275 167 0 0 chr3 1634189 1634231 -216402927 + MLT1C LTR MaLR 28 69 -321 1331 180 214 0 chr3 1634231 1634525 -216402633 - MLT1A1 LTR MaLR 0 365 9 * 1537 198 95 29 chr3 1634521 1634797 -216402361 + MLT1C LTR MaLR 63 372 -95 2400 88 3 0 chr3 1634797 1635104 -216402054 + AluSx SINE Alu 1 308 -4 1537 198 95 29 chr3 1635104 1635205 -216401953 + MLT1C LTR MaLR 372 465 -2 1872 150 7 3 chr3 1635514 1635800 -216401358 - AluJb SINE Alu -15 297 11 962 280 37 47 chr3 1635887 1636316 -216400842 + L2 LINE L2 2886 3310 -3 23 0 0 0 chr3 1636619 1636642 -216400516 + AT_rich Low_complexity Low_complexity 1 23 0 1118 99 215 11 chr3 1636831 1636925 -216400233 - MER30 DNA MER1_type 0 230 156 225 0 0 0 chr3 1636925 1636950 -216400208 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1118 99 215 11 chr3 1636950 1637046 -216400112 - MER30 DNA MER1_type -74 156 1 941 207 84 0 chr3 1638901 1639104 -216398054 - MIR SINE MIR -31 231 12 436 274 160 9 chr3 1639157 1639376 -216397782 + MIR SINE MIR 5 256 -6 366 279 75 87 chr3 1639719 1639887 -216397271 + L1MC5 LINE L1 7552 7721 -284 749 168 26 0 chr3 1639887 1640000 -216397158 + FLAM_A SINE Alu 4 119 -14 366 279 75 87 chr3 1640000 1640303 -216396855 + L1MC5 LINE L1 7721 7948 -57 311 250 70 35 chr3 1640645 1640817 -216396341 - HAL1 LINE L1 -356 2151 1974 3035 74 0 6 chr3 1641566 1641932 -216395226 + THE1B LTR MaLR 1 364 0 201 264 38 0 chr3 1642052 1642105 -216395053 + MIR SINE MIR 167 221 -41 3872 154 10 56 chr3 1642203 1642932 -216394226 + L1MC1 LINE L1 5636 6330 -3 685 307 95 4 chr3 1643043 1643274 -216393884 + MIR SINE MIR 1 252 -10 350 286 25 25 chr3 1643282 1643401 -216393757 + L1MC/D LINE L1 5699 5817 -1991 630 157 9 0 chr3 1643417 1643525 -216393633 - L1MC1 LINE L1 -473 5860 5752 294 228 44 88 chr3 1643704 1643818 -216393340 + MIR SINE MIR 40 148 -60 236 94 19 57 chr3 1644506 1644559 -216392599 + L2 LINE L2 3192 3242 -30 185 200 0 0 chr3 1644703 1644733 -216392425 - L2 LINE L2 -26 3287 3258 361 219 58 2 chr3 1644802 1644905 -216392253 + MIR SINE MIR 42 152 -56 1697 153 3 36 chr3 1644995 1645137 -216392021 + AluJb SINE Alu 1 129 -183 2391 99 0 0 chr3 1645137 1645440 -216391718 + AluSq SINE Alu 1 303 -10 1697 153 3 36 chr3 1645440 1645598 -216391560 + AluJb SINE Alu 129 291 -21 211 318 135 56 chr3 1645957 1646083 -216391075 - L2 LINE L2 -3 3269 3134 1006 184 35 6 chr3 1646098 1646272 -216390886 + MER21B LTR ERV1 1 179 -684 482 294 150 7 chr3 1646888 1647041 -216390117 - MER5A DNA MER1_type -6 183 9 365 250 95 87 chr3 1647057 1647241 -216389917 + MER112 DNA MER1_type 1 189 -67 1638 175 10 36 chr3 1647241 1647549 -216389609 + AluJo SINE Alu 1 300 -12 365 250 95 87 chr3 1647549 1647616 -216389542 + MER112 DNA MER1_type 189 254 -2 825 188 38 42 chr3 1647849 1647900 -216389258 + L1MC5 LINE L1 6671 6721 -1240 1696 190 3 10 chr3 1647900 1648205 -216388953 + AluJo SINE Alu 1 303 -9 825 188 38 42 chr3 1648205 1648366 -216388792 + L1MC5 LINE L1 6721 6882 -1079 228 237 17 0 chr3 1648384 1648443 -216388715 + L1MC5 LINE L1 7189 7248 -713 623 168 0 35 chr3 1648487 1648600 -216388558 + FLAM_A SINE Alu 22 130 -12 720 221 129 40 chr3 1648600 1648872 -216388286 + L1MC5 LINE L1 7313 7608 -353 21 82 0 0 chr3 1648872 1648921 -216388237 + AT_rich Low_complexity Low_complexity 1 49 0 692 218 113 14 chr3 1649241 1649383 -216387775 - FAM SINE Alu -19 166 11 1152 255 99 49 chr3 1649898 1650177 -216386981 + L2 LINE L2 2804 3119 -194 3769 153 60 6 chr3 1650177 1650842 -216386316 - L1MB3 LINE L1 -2 6181 5481 1152 255 99 49 chr3 1650842 1651048 -216386110 + L2 LINE L2 3119 3313 0 195 42 0 0 chr3 1652062 1652086 -216385072 + (CA)n Simple_repeat Simple_repeat 1 24 0 242 290 86 0 chr3 1652597 1652690 -216384468 + MIR SINE MIR 37 137 -125 226 96 19 19 chr3 1654945 1654997 -216382161 + (TCC)n Simple_repeat Simple_repeat 1 52 0 277 203 188 0 chr3 1656074 1656143 -216381015 - L2 LINE L2 -4 3268 3187 198 103 0 0 chr3 1656194 1656223 -216380935 + (TAA)n Simple_repeat Simple_repeat 3 31 0 310 279 79 10 chr3 1656298 1656417 -216380741 - MIR SINE MIR -66 142 37 216 185 37 19 chr3 1656495 1656549 -216380609 + MIR SINE MIR 82 136 -72 420 243 207 36 chr3 1656688 1656896 -216380262 - MIR SINE MIR -1 261 20 1295 180 121 0 chr3 1657877 1658166 -216378992 + MER33 DNA MER1_type 1 324 0 1045 73 66 20 chr3 1658789 1658940 -216378218 + L1MA1 LINE L1 6145 6302 0 1621 248 83 54 chr3 1660147 1660243 -216376915 + L1MC4 LINE L1 7102 7194 -848 1989 155 0 3 chr3 1660243 1660547 -216376611 + AluJb SINE Alu 1 303 -9 1621 248 83 54 chr3 1660547 1660955 -216376203 + L1MC4 LINE L1 7194 7638 -404 712 154 24 0 chr3 1660955 1661078 -216376080 + L1MA6 LINE L1 6175 6300 0 1621 248 83 54 chr3 1661078 1661331 -216375827 + L1MC4 LINE L1 7638 7882 -160 1140 123 0 0 chr3 1661338 1661493 -216375665 + AluSg/x SINE Alu 142 296 -16 1921 139 3 3 chr3 1661860 1662148 -216375010 + AluSx SINE Alu 1 288 -24 207 100 0 0 chr3 1663106 1663136 -216374022 + (GGA)n Simple_repeat Simple_repeat 3 32 0 1727 117 62 25 chr3 1663215 1663489 -216373669 + AluSx SINE Alu 12 295 -17 204 158 0 0 chr3 1663489 1663527 -216373631 + G-rich Low_complexity Low_complexity 1 38 0 1841 153 0 4 chr3 1663636 1663933 -216373225 + AluSx SINE Alu 9 304 0 970 191 182 22 chr3 1664121 1664346 -216372812 + AluJo SINE Alu 29 289 -23 2206 133 0 0 chr3 1664426 1664734 -216372424 + AluSx SINE Alu 1 308 -4 556 114 13 0 chr3 1664800 1664879 -216372279 + MADE1 DNA Mariner 1 80 0 2230 110 0 3 chr3 1665293 1665601 -216371557 + AluSx SINE Alu 1 307 -5 201 303 34 22 chr3 1665871 1665960 -216371198 + L2 LINE L2 3219 3308 -5 21 36 0 0 chr3 1666042 1666070 -216371088 + AT_rich Low_complexity Low_complexity 1 28 0 2041 148 13 0 chr3 1666116 1666419 -216370739 + AluJb SINE Alu 1 307 -5 2754 134 28 77 chr3 1666525 1666768 -216370390 + L1MB8 LINE L1 5632 5885 -293 2263 63 40 27 chr3 1666768 1667069 -216370089 + AluSq SINE Alu 1 305 -8 2754 134 28 77 chr3 1667069 1667367 -216369791 + L1MB8 LINE L1 5885 6146 -32 1256 188 96 11 chr3 1667367 1667638 -216369520 - AluJo SINE Alu -18 294 1 2754 134 28 77 chr3 1667638 1667670 -216369488 + L1MB8 LINE L1 6146 6178 0 184 247 398 11 chr3 1667680 1667773 -216369385 + MIR SINE MIR 49 177 -85 387 0 0 0 chr3 1667833 1667876 -216369282 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1326 154 5 23 chr3 1667876 1668097 -216369061 - AluJo SINE Alu -32 280 64 571 261 69 42 chr3 1668558 1668776 -216368382 + MIR SINE MIR 29 262 0 262 275 137 30 chr3 1668943 1669074 -216368084 - MIR3 SINE MIR -48 160 16 255 103 0 0 chr3 1669147 1669186 -216367972 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 1855 95 4 58 chr3 1669199 1669473 -216367685 - AluSx SINE Alu -53 259 1 24 0 0 0 chr3 1669479 1669503 -216367655 + AT_rich Low_complexity Low_complexity 1 24 0 491 296 87 6 chr3 1670283 1670455 -216366703 - MIR SINE MIR -16 246 61 407 190 0 25 chr3 1670487 1670566 -216366592 + MER5A DNA MER1_type 4 80 -109 822 216 282 25 chr3 1670569 1670810 -216366348 + AluSx SINE Alu 9 311 -1 622 212 18 0 chr3 1670810 1670923 -216366235 + MER5A DNA MER1_type 72 186 -3 2041 183 21 50 chr3 1671442 1671907 -216365251 - MLT1D LTR MaLR 0 505 54 578 223 159 19 chr3 1673108 1673265 -216363893 + MER5A DNA MER1_type 1 179 -10 2624 39 3 0 chr3 1673905 1674215 -216362943 + AluY SINE Alu 1 311 0 201 276 53 0 chr3 1674523 1674599 -216362559 - MIR SINE MIR 0 262 183 839 213 33 0 chr3 1724628 1724872 -216312286 + L1M1 LINE L1 3466 3717 -3848 942 55 16 8 chr3 1724872 1725000 -216312158 + AluY SINE Alu 181 309 -2 3964 206 25 16 chr3 1725000 1726000 -216311158 + L1M1 LINE L1 3711 4719 -2846 345 276 57 0 chr3 1726738 1726843 -216310315 - MIR SINE MIR -2 260 150 824 168 28 10 chr3 1726843 1727125 -216310033 - MLT1A1 LTR MaLR 0 365 3 483 198 83 0 chr3 1727126 1727222 -216309936 - MIR SINE MIR -107 155 52 2209 115 0 0 chr3 1727690 1727986 -216309172 - AluSx SINE Alu -16 296 1 2261 116 0 0 chr3 1728053 1728347 -216308811 - AluSx SINE Alu -18 294 1 1805 177 17 0 chr3 1728882 1729181 -216307977 - AluJb SINE Alu -8 304 1 2124 124 7 23 chr3 1729239 1729546 -216307612 + AluSx SINE Alu 1 302 -10 552 305 53 10 chr3 1729704 1730098 -216307060 + L1MEc LINE L1 1243 1653 -4954 554 308 108 71 chr3 1730353 1730843 -216306315 + L2 LINE L2 2805 3312 -1 2572 34 0 3 chr3 1731288 1731586 -216305572 - AluY SINE Alu -14 297 1 230 183 0 17 chr3 1732399 1732459 -216304699 + L1MEc LINE L1 2006 2064 -4362 252 333 0 0 chr3 1732460 1732526 -216304632 + (TATATG)n Simple_repeat Simple_repeat 6 71 0 316 266 0 43 chr3 1732526 1732620 -216304538 + L1MC4 LINE L1 6614 6703 -1339 301 322 0 0 chr3 1732600 1732687 -216304471 - L1MC4 LINE L1 -1339 6703 6617 * 213 231 0 0 chr3 1732689 1732728 -216304430 + (TATATG)n Simple_repeat Simple_repeat 6 44 0 311 322 0 0 chr3 1732728 1732818 -216304340 - L1MC4 LINE L1 -1339 6703 6614 301 322 0 0 chr3 1732746 1732836 -216304322 + L1MC4 LINE L1 6614 6703 -1339 * 659 232 0 11 chr3 1732869 1733046 -216304112 + (TATATG)n Simple_repeat Simple_repeat 2 176 0 977 112 0 0 chr3 1733069 1733194 -216303964 - AluSq/x SINE Alu -188 125 1 308 155 0 0 chr3 1733194 1733252 -216303906 + L1MA7 LINE L1 4326 4383 -1763 5309 136 28 18 chr3 1733295 1734526 -216302632 + L1MA7 LINE L1 4585 5836 -455 2330 79 0 3 chr3 1734526 1734830 -216302328 + AluY SINE Alu 1 303 -8 5309 136 28 18 chr3 1734830 1735291 -216301867 + L1MA7 LINE L1 5836 6291 0 420 236 21 103 chr3 1735881 1736114 -216301044 + L1MC4a LINE L1 5722 5935 -1873 1309 100 0 0 chr3 1736461 1736631 -216300527 + AluY SINE Alu 137 306 -5 4140 179 22 10 chr3 1736631 1737334 -216299824 - L1 LINE L1 -1925 4221 3502 2163 106 0 3 chr3 1737334 1737642 -216299516 - AluSx SINE Alu 0 307 1 4140 179 22 10 chr3 1737642 1737831 -216299327 - L1 LINE L1 -2644 3502 3317 4283 148 26 1 chr3 1737989 1738744 -216298414 - L1MB7 LINE L1 -20 6164 5391 328 301 11 11 chr3 1738784 1738877 -216298281 - L2 LINE L2 -43 3229 3137 1462 170 52 28 chr3 1739113 1739242 -216297916 + AluJb SINE Alu 1 125 -187 2457 70 0 3 chr3 1739242 1739543 -216297615 + AluSx SINE Alu 1 300 -12 1462 170 52 28 chr3 1739543 1739701 -216297457 + AluJb SINE Alu 125 295 -17 766 245 92 40 chr3 1740255 1740504 -216296654 - MIR SINE MIR 0 262 1 2236 78 17 0 chr3 1741087 1741382 -216295776 + AluY SINE Alu 1 300 -11 1470 203 108 16 chr3 1741529 1741569 -216295589 + Charlie4a DNA MER1_type 30 65 -1896 569 91 0 0 chr3 1741569 1741646 -216295512 + MADE1 DNA Mariner 2 78 -2 1470 203 108 16 chr3 1741646 1741960 -216295198 + Charlie4a DNA MER1_type 65 434 -1527 205 27 81 0 chr3 1741960 1741997 -216295161 + T-rich Low_complexity Low_complexity 5 44 0 1470 203 108 16 chr3 1741997 1742075 -216295083 + Charlie4a DNA MER1_type 434 503 -5 806 333 71 50 chr3 1742120 1742558 -216294600 + L2 LINE L2 2826 3272 0 187 343 74 40 chr3 1742590 1742813 -216294345 - L2 LINE L2 -913 2401 2160 363 325 16 26 chr3 1742813 1743004 -216294154 + MER5A DNA MER1_type 1 189 0 187 343 74 40 chr3 1743004 1743130 -216294028 - L2 LINE L2 -1154 2160 2040 633 204 95 41 chr3 1745551 1745845 -216291313 - MER113 DNA MER1_type? -37 484 175 420 266 30 39 chr3 1745881 1746084 -216291074 - L1ME3A LINE L1 -7 6163 5963 1517 190 55 92 chr3 1746172 1746552 -216290606 - L1MC5 LINE L1 -436 7525 7132 2592 110 6 3 chr3 1746552 1746915 -216290243 - THE1B LTR MaLR 0 364 1 1517 190 55 92 chr3 1746915 1747106 -216290052 - L1MC5 LINE L1 -829 7132 6976 1238 192 7 19 chr3 1747106 1747377 -216289781 - L1MD2 LINE L1 -2 6357 6090 1517 190 55 92 chr3 1747377 1747425 -216289733 - L1MC5 LINE L1 -985 6976 6928 1801 165 0 38 chr3 1747425 1747741 -216289417 + AluJo SINE Alu 1 304 -8 306 190 25 0 chr3 1747808 1747887 -216289271 - L1MB7 LINE L1 -10 6174 6094 374 222 40 20 chr3 1747959 1748058 -216289100 - L1MB8 LINE L1 -103 6075 5975 561 218 19 46 chr3 1748147 1748301 -216288857 - L1MC5 LINE L1 -1183 6859 6630 565 317 50 32 chr3 1748744 1749276 -216287882 - HAL1b LINE L1 -725 623 79 1836 173 3 6 chr3 1749276 1749589 -216287569 - AluJo SINE Alu 0 312 1 565 317 50 32 chr3 1749589 1749617 -216287541 - HAL1b LINE L1 -1269 79 53 1920 141 3 16 chr3 1749773 1750077 -216287081 - AluSx SINE Alu -12 300 1 251 300 14 0 chr3 1750375 1750445 -216286713 + CT-rich Low_complexity Low_complexity 2 72 0 2224 19 0 15 chr3 1750552 1750813 -216286345 + AluY SINE Alu 41 297 -14 3496 139 2 13 chr3 1751523 1752056 -216285102 - MER1A DNA MER1_type 0 527 1 2394 73 0 29 chr3 1752806 1753119 -216284039 - AluSq SINE Alu -9 304 1 552 183 87 32 chr3 1753218 1753344 -216283814 + FLAM_C SINE Alu 1 133 0 240 287 58 19 chr3 1753448 1753534 -216283624 + MIR SINE MIR 22 112 -96 1910 135 0 10 chr3 1753534 1753830 -216283328 - AluJo SINE Alu -19 293 1 240 287 58 19 chr3 1753830 1753842 -216283316 + MIR SINE MIR 112 122 -86 653 309 79 14 chr3 1753842 1754473 -216282685 - L1MDa LINE L1 -3049 3080 2409 1374 180 0 42 chr3 1754475 1754781 -216282377 - MER31B LTR ERV1 -173 293 1 21 100 0 0 chr3 1754857 1754927 -216282231 + AT_rich Low_complexity Low_complexity 1 70 0 387 249 58 39 chr3 1754938 1755104 -216282054 - L1MDa LINE L1 -3711 2418 2257 2250 123 7 0 chr3 1755104 1755414 -216281744 - AluSx SINE Alu 0 312 1 387 249 58 39 chr3 1755414 1755622 -216281536 - L1MDa LINE L1 -3872 2257 2038 373 253 150 60 chr3 1755905 1756359 -216280799 - L1MDa LINE L1 -4585 1725 1231 308 237 40 0 chr3 1756391 1756467 -216280691 - L1MDa LINE L1 -3203 2926 2848 351 213 27 87 chr3 1756490 1756640 -216280518 - L1MDa LINE L1 -4929 1190 1050 298 207 62 41 chr3 1756653 1756798 -216280360 - L1MDa LINE L1 -4121 2419 2272 813 152 0 29 chr3 1756933 1757071 -216280087 - AluJb SINE Alu -178 134 1 1748 225 92 42 chr3 1757084 1757846 -216279312 - L1MDa LINE L1 -4421 2119 1164 2047 110 3 10 chr3 1757846 1758145 -216279013 + AluSx SINE Alu 3 299 -13 1748 225 92 42 chr3 1758145 1758235 -216278923 - L1MDa LINE L1 -5376 1164 1080 328 311 10 19 chr3 1758413 1758516 -216278642 + MIR SINE MIR 149 250 -12 1916 147 72 0 chr3 1758775 1759108 -216278050 - L1MB4 LINE L1 -8 6172 5816 507 295 66 56 chr3 1760186 1760488 -216276670 - L2 LINE L2 -1 3312 3008 303 273 293 59 chr3 1760486 1760926 -216276232 - L2 LINE L2 -414 2900 2358 * 477 342 96 21 chr3 1760887 1761168 -216275990 + L3 LINE CR1 1181 1482 -95 363 244 37 0 chr3 1761171 1761253 -216275905 + MER94 DNA DNA 1 85 -49 2630 203 21 20 chr3 1761260 1761950 -216275208 - LTR27 LTR ERV1 -3 633 3 189 420 37 0 chr3 1762021 1762102 -216275056 + L3 LINE CR1 1484 1567 -10 265 278 14 0 chr3 1762407 1762479 -216274679 + L2 LINE L2 3241 3313 0 438 261 6 85 chr3 1762565 1762730 -216274428 - MIR SINE MIR -78 184 33 300 261 67 8 chr3 1762730 1762849 -216274309 - MER103 DNA DNA -31 135 10 313 305 162 24 chr3 1762927 1763094 -216274064 + MIR3 SINE MIR 8 197 -11 367 253 103 79 chr3 1763907 1764160 -216272998 + L1ME4a LINE L1 5624 5882 -239 1833 155 0 0 chr3 1764427 1764711 -216272447 + AluJo SINE Alu 11 294 -18 311 282 75 62 chr3 1764716 1764957 -216272201 - L1ME4a LINE L1 -70 6051 5808 309 171 100 0 chr3 1764970 1765040 -216272118 - L1ME4a LINE L1 -500 5621 5545 2337 92 10 104 chr3 1766948 1767350 -216269808 + THE1B LTR MaLR 1 364 0 997 238 17 26 chr3 1767690 1767921 -216269237 - MIR SINE MIR -27 235 7 1082 180 15 40 chr3 1767991 1768191 -216268967 + MER20 DNA MER1_type 25 219 0 2305 150 43 26 chr3 1768996 1769415 -216267743 - MSTB LTR MaLR 0 426 1 22 70 0 0 chr3 1769415 1769458 -216267700 + AT_rich Low_complexity Low_complexity 1 43 0 221 205 0 0 chr3 1769523 1769562 -216267596 + L2 LINE L2 3262 3300 -13 1896 96 64 0 chr3 1769686 1769757 -216267401 - L1PB1 LINE L1 -285 5866 5801 261 0 0 0 chr3 1769757 1769786 -216267372 + (TG)n Simple_repeat Simple_repeat 2 30 0 1896 96 64 0 chr3 1769786 1769995 -216267163 - L1PB1 LINE L1 -350 5801 5568 1893 86 67 0 chr3 1769995 1770259 -216266899 + L1PB1 LINE L1 5864 6149 -2 31 26 0 0 chr3 1770260 1770298 -216266860 + AT_rich Low_complexity Low_complexity 1 38 0 859 230 47 74 chr3 1770357 1770652 -216266506 + L1MC/D LINE L1 5589 5874 -390 26 0 0 0 chr3 1770673 1770699 -216266459 + AT_rich Low_complexity Low_complexity 1 26 0 1766 142 0 17 chr3 1771281 1771576 -216265582 + AluJb SINE Alu 1 290 -22 631 276 57 38 chr3 1771713 1771923 -216265235 - MIR SINE MIR -34 228 15 328 267 82 44 chr3 1771993 1772180 -216264978 - MIR SINE MIR -33 229 40 181 206 73 88 chr3 1772268 1772336 -216264822 + MIR SINE MIR 119 185 -77 2193 84 0 3 chr3 1772370 1772669 -216264489 + AluY SINE Alu 1 298 -13 326 170 0 0 chr3 1774016 1774069 -216263089 + L2 LINE L2 3220 3272 0 535 287 96 20 chr3 1774314 1774565 -216262593 - LTR16A LTR ERVL -1 449 180 26 0 0 0 chr3 1775683 1775709 -216261449 + AT_rich Low_complexity Low_complexity 1 26 0 416 260 82 7 chr3 1776123 1776269 -216260889 - L1ME4a LINE L1 -5 6116 5960 1182 231 20 4 chr3 1776279 1776530 -216260628 - MIR SINE MIR 0 262 8 342 275 126 60 chr3 1776551 1776915 -216260243 - L1ME4a LINE L1 -177 5944 5557 770 188 79 50 chr3 1777003 1777205 -216259953 - MLT1A1 LTR MaLR -1 364 157 1978 131 3 0 chr3 1777223 1777533 -216259625 - AluSx SINE Alu 0 311 1 315 311 43 30 chr3 1777534 1777698 -216259460 - L1ME LINE L1 -454 5667 5502 1860 136 58 0 chr3 1777807 1778102 -216259056 - AluSx SINE Alu 0 312 1 1049 171 0 0 chr3 1778721 1778885 -216258273 - AluJb SINE Alu -18 294 131 1140 140 0 6 chr3 1778899 1779078 -216258080 + AluSx SINE Alu 1 178 -134 2155 96 0 10 chr3 1780712 1781013 -216256145 + AluSg SINE Alu 1 298 -12 261 98 0 0 chr3 1787603 1787644 -216249514 + (TG)n Simple_repeat Simple_repeat 2 42 0 25 31 0 0 chr3 1787692 1787724 -216249434 + AT_rich Low_complexity Low_complexity 1 32 0 236 350 49 16 chr3 1788444 1788567 -216248591 - L2 LINE L2 -4 3268 3142 486 241 7 78 chr3 1789210 1789351 -216247807 + MIR SINE MIR 37 167 -95 1202 135 5 0 chr3 1790687 1790879 -216246279 - AluSg/x SINE Alu -6 306 114 663 201 14 21 chr3 1792140 1792284 -216244874 + Tigger3(Golem) DNA MER2_type 2887 3029 0 924 147 26 0 chr3 1792680 1792836 -216244322 + AluSg/x SINE Alu 120 279 -31 429 20 0 0 chr3 1792839 1792889 -216244269 + (CA)n Simple_repeat Simple_repeat 2 51 0 1631 149 101 0 chr3 1793363 1793677 -216243481 + MER2 DNA MER2_type 1 345 0 612 162 40 23 chr3 1800241 1800550 -216236608 + (TTAGGG)n Simple_repeat Simple_repeat 1 314 0 200 250 135 0 chr3 1800860 1800912 -216236246 + MIR SINE MIR 86 144 -118 2258 151 41 17 chr3 1801741 1802157 -216235001 - MSTB1 LTR MaLR -6 426 1 296 280 70 32 chr3 1802785 1802942 -216234216 - L1MC5 LINE L1 -91 7870 7708 1977 109 16 13 chr3 1803727 1804031 -216233127 + AluSx SINE Alu 2 306 -6 214 323 0 15 chr3 1804456 1804521 -216232637 + MIR SINE MIR 186 249 -13 2262 97 0 0 chr3 1806689 1806999 -216230159 + AluSg SINE Alu 1 310 0 1296 190 37 53 chr3 1807537 1807837 -216229321 + AluJb SINE Alu 1 295 -7 271 315 61 42 chr3 1808044 1808209 -216228949 - L2 LINE L2 -17 3296 3129 253 244 0 13 chr3 1809345 1809423 -216227735 - MLT1B LTR MaLR -234 156 80 1907 120 0 7 chr3 1810645 1810919 -216226239 - AluSx SINE Alu -40 272 1 2370 113 49 0 chr3 1817693 1818039 -216219119 + THE1B LTR MaLR 2 364 0 565 121 0 44 chr3 1820626 1820717 -216216441 - AluSp/q SINE Alu -16 297 211 409 301 90 48 chr3 1820993 1821370 -216215788 + L1ME LINE L1 5259 5662 -459 2266 103 3 23 chr3 1821370 1821680 -216215478 + AluSx SINE Alu 3 306 -6 409 301 90 48 chr3 1821680 1821780 -216215378 + L1ME LINE L1 5662 5756 -365 363 303 113 33 chr3 1822572 1822759 -216214399 + MIR3 SINE MIR 2 203 -5 504 296 87 24 chr3 1825068 1825274 -216211884 - MIR SINE MIR 0 262 44 2165 119 6 16 chr3 1826643 1826816 -216210342 - AluSx SINE Alu -4 308 138 1932 124 72 0 chr3 1826816 1826987 -216210171 - AluSq SINE Alu -2 311 109 188 35 35 0 chr3 1826987 1827016 -216210142 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 1932 124 72 0 chr3 1827016 1827134 -216210024 - AluSq SINE Alu -204 109 1 2165 119 6 16 chr3 1827134 1827271 -216209887 - AluSx SINE Alu -174 138 1 420 293 40 59 chr3 1827271 1827593 -216209565 - L1MCa LINE L1 -3863 2563 2242 520 271 50 14 chr3 1829864 1830048 -216207110 - MIR SINE MIR -6 256 68 191 253 36 96 chr3 1831654 1831737 -216205421 - L2 LINE L2 -2 3311 3234 438 220 47 27 chr3 1832276 1832426 -216204732 + CT-rich Low_complexity Low_complexity 5 157 0 902 83 61 8 chr3 1834263 1834395 -216202763 + MER85 DNA T2_type 1 139 0 929 76 8 23 chr3 1835489 1835621 -216201537 + AluY SINE Alu 56 185 -126 339 358 34 22 chr3 1836066 1836245 -216200913 + MIR3 SINE MIR 19 199 -9 21 0 0 0 chr3 1837012 1837033 -216200125 + GC_rich Low_complexity Low_complexity 1 21 0 505 231 12 0 chr3 1838926 1839099 -216198059 + (CAT)n Simple_repeat Simple_repeat 3 177 0 729 213 4 0 chr3 1839125 1839366 -216197792 + (CAT)n Simple_repeat Simple_repeat 1 242 0 33 0 0 0 chr3 1840017 1840050 -216197108 + AT_rich Low_complexity Low_complexity 1 33 0 616 203 8 17 chr3 1841210 1841328 -216195830 - FLAM_A SINE Alu -24 118 2 2133 111 4 0 chr3 1841473 1841789 -216195369 + AluSx SINE Alu 1 317 0 226 441 31 31 chr3 1842247 1842374 -216194784 + polypurine Low_complexity Low_complexity 5 131 0 378 138 25 25 chr3 1845135 1845215 -216191943 - AluS SINE Alu -223 80 1 332 43 22 0 chr3 1847558 1847604 -216189554 + (TAA)n Simple_repeat Simple_repeat 1 47 0 258 56 0 0 chr3 1847642 1847678 -216189480 + (TG)n Simple_repeat Simple_repeat 2 37 0 430 339 20 8 chr3 1849386 1849745 -216187413 + (TGGG)n Simple_repeat Simple_repeat 1 363 0 250 341 8 8 chr3 1849719 1849851 -216187307 + G-rich Low_complexity Low_complexity 5 136 0 * 688 204 97 62 chr3 1851317 1851493 -216185665 + AluJo SINE Alu 2 183 -129 2205 113 0 0 chr3 1852554 1852836 -216184322 - AluSq SINE Alu -31 282 1 298 393 43 34 chr3 1854093 1854510 -216182648 - L2 LINE L2 -585 2729 2309 752 234 6 12 chr3 1854567 1854734 -216182424 - MIR SINE MIR -23 239 74 10229 45 6 10 chr3 1854738 1856088 -216181070 - L1P LINE L1 -758 5388 4044 261 57 0 0 chr3 1857229 1857264 -216179894 + (CA)n Simple_repeat Simple_repeat 2 36 0 488 354 28 6 chr3 1858347 1858528 -216178630 + MIR SINE MIR 3 187 -75 2315 153 88 7 chr3 1860091 1860523 -216176635 - MLT1C LTR MaLR 0 467 1 1184 233 102 32 chr3 1861256 1861728 -216175430 - MLT1D LTR MaLR 0 505 1 1478 145 35 14 chr3 1862371 1862654 -216174504 + L1MB3 LINE L1 5893 6181 -2 244 229 60 78 chr3 1862880 1863046 -216174112 + LTR16A1 LTR ERVL 245 407 -50 2074 149 10 0 chr3 1863406 1863715 -216173443 + AluSx SINE Alu 1 312 0 814 202 140 36 chr3 1863993 1864300 -216172858 - LTR37A LTR ERV1 -4 422 84 827 201 0 18 chr3 1864307 1864471 -216172687 + FRAM SINE Alu 3 163 -3 1509 190 4 11 chr3 1864535 1864809 -216172349 + AluJo SINE Alu 40 311 -1 392 234 128 0 chr3 1864930 1865071 -216172087 + MER103 DNA DNA 8 166 0 539 350 16 40 chr3 1865686 1865936 -216171222 + MIR SINE MIR 9 250 -12 450 202 42 8 chr3 1866107 1866226 -216170932 - MER113 DNA MER1_type? -397 124 2 319 286 216 12 chr3 1866230 1866384 -216170774 + L3 LINE CR1 1288 1409 -168 2688 181 11 29 chr3 1866384 1866904 -216170254 + MLT2B2 LTR ERVL 1 511 -4 319 286 216 12 chr3 1866904 1866990 -216170168 + L3 LINE CR1 1409 1577 0 375 60 0 0 chr3 1867486 1867536 -216169622 + (CA)n Simple_repeat Simple_repeat 2 51 0 378 248 90 35 chr3 1867890 1868035 -216169123 - MIR SINE MIR -36 226 74 339 260 72 27 chr3 1868079 1868230 -216168928 - MIR3 SINE MIR -30 178 28 190 225 0 0 chr3 1868402 1868442 -216168716 - MIR SINE MIR -13 249 210 288 360 0 0 chr3 1868543 1868643 -216168515 - MIR SINE MIR -76 132 33 322 255 39 98 chr3 1868803 1868956 -216168202 + L1M2a LINE L1 610 753 -6415 258 328 61 30 chr3 1869464 1869595 -216167563 + MIR SINE MIR 21 155 -107 567 243 69 129 chr3 1869751 1870184 -216166974 - LTR16C LTR ERVL -3 488 82 364 219 61 0 chr3 1870250 1870332 -216166826 + L2 LINE L2 3186 3272 0 284 233 50 0 chr3 1870542 1870602 -216166556 + L2 LINE L2 3198 3260 -12 322 218 65 73 chr3 1870943 1871249 -216165909 + MLT1H LTR MaLR 206 549 0 21 36 0 0 chr3 1873031 1873059 -216164099 + AT_rich Low_complexity Low_complexity 1 28 0 517 266 50 50 chr3 1873115 1873176 -216163982 + MIR SINE MIR 41 101 -161 1441 217 81 36 chr3 1873176 1873619 -216163539 - MLT1C LTR MaLR 0 467 5 517 266 50 50 chr3 1873619 1873779 -216163379 + MIR SINE MIR 100 262 0 405 313 22 15 chr3 1874210 1874344 -216162814 + MIR SINE MIR 20 154 -108 2443 154 0 5 chr3 1874377 1874799 -216162359 + L1MB3 LINE L1 5757 6176 -7 25 0 0 0 chr3 1874799 1874824 -216162334 + AT_rich Low_complexity Low_complexity 1 25 0 494 299 41 7 chr3 1875052 1875199 -216161959 + MIR3 SINE MIR 14 165 -43 603 112 45 15 chr3 1875464 1875598 -216161560 + L1MB2 LINE L1 6034 6171 0 2109 145 0 0 chr3 1875898 1876208 -216160950 + AluJb SINE Alu 1 310 -2 531 346 121 32 chr3 1876500 1876847 -216160311 - L2 LINE L2 0 3272 2895 2345 100 0 3 chr3 1877119 1877429 -216159729 + AluSx SINE Alu 1 309 -3 2387 148 54 6 chr3 1878719 1879239 -216157919 - L1MC1 LINE L1 -18 6315 5727 291 346 60 39 chr3 1879315 1879497 -216157661 - L3 LINE CR1 -32 1545 1360 1983 87 52 16 chr3 1879585 1879791 -216157367 - L1PA12 LINE L1 -2 6166 5944 2974 119 2 5 chr3 1879791 1880226 -216156932 - MER57B LTR ERV1 0 434 1 1983 87 52 16 chr3 1880226 1880329 -216156829 - L1PA12 LINE L1 -224 5944 5846 384 331 190 20 chr3 1880494 1880884 -216156274 - L3 LINE CR1 -346 1231 776 569 300 95 71 chr3 1880975 1881471 -216155687 - L2 LINE L2 -1 3312 2805 24 32 0 0 chr3 1881863 1881894 -216155264 + AT_rich Low_complexity Low_complexity 1 31 0 220 250 77 0 chr3 1882184 1882236 -216154922 - L2 LINE L2 0 3272 3217 990 211 5 0 chr3 1882242 1882436 -216154722 + MER63A DNA MER1_type 5 199 -11 412 328 50 76 chr3 1882451 1883041 -216154117 - L2 LINE L2 -51 3221 2661 529 90 13 0 chr3 1883170 1883248 -216153910 - MADE1 DNA Mariner -1 79 1 706 207 19 58 chr3 1883509 1883717 -216153441 + MER3 DNA MER1_type 1 200 -9 229 322 0 0 chr3 1884527 1884586 -216152572 - L2 LINE L2 -2 3311 3253 2149 117 0 0 chr3 1885245 1885535 -216151623 - AluSc SINE Alu -12 297 8 321 324 94 18 chr3 1885755 1885925 -216151233 - MIR SINE MIR -65 197 15 189 250 54 0 chr3 1886656 1886712 -216150446 - MIR SINE MIR -79 183 125 339 308 0 34 chr3 1888462 1888579 -216148579 - MIR3 SINE MIR -90 118 6 844 272 66 11 chr3 1888690 1888977 -216148181 + MER102b DNA MER1_type 21 323 -18 2154 178 10 0 chr3 1889156 1889550 -216147608 - MER57A LTR ERV1 0 403 6 424 91 0 26 chr3 1889746 1889823 -216147335 + (TTCC)n Simple_repeat Simple_repeat 2 76 0 190 279 209 0 chr3 1889877 1889963 -216147195 - L2 LINE L2 -1 3312 3209 550 306 52 35 chr3 1890207 1890439 -216146719 - MIR SINE MIR -10 252 17 303 28 0 0 chr3 1890512 1890548 -216146610 + (CA)n Simple_repeat Simple_repeat 2 37 0 1152 86 0 0 chr3 1891051 1891203 -216145955 + AluY SINE Alu 160 311 0 479 304 104 11 chr3 1892077 1892337 -216144821 - L2 LINE L2 0 3313 3030 556 291 57 40 chr3 1892585 1892812 -216144346 + MIR SINE MIR 20 250 -12 22 0 0 0 chr3 1893224 1893246 -216143912 + AT_rich Low_complexity Low_complexity 1 22 0 252 266 0 0 chr3 1894200 1894264 -216142894 - MER117 DNA MER1_type -119 78 15 397 302 78 0 chr3 1896307 1896504 -216140654 - MIR SINE MIR 0 262 50 193 294 206 10 chr3 1896945 1897047 -216140111 - MIR SINE MIR -138 124 3 366 367 6 28 chr3 1897383 1897563 -216139595 - MIR3 SINE MIR -10 198 23 275 360 74 46 chr3 1897797 1897972 -216139186 + L3 LINE CR1 214 393 -1184 815 346 99 9 chr3 1898211 1898460 -216138698 + L3 LINE CR1 400 625 -952 210 37 0 0 chr3 1898460 1898487 -216138671 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 815 346 99 9 chr3 1898487 1898691 -216138467 + L3 LINE CR1 625 894 -683 1053 179 10 0 chr3 1899046 1899241 -216137917 - MER58 DNA MER1_type -2187 233 37 198 0 0 0 chr3 1899273 1899295 -216137863 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 331 44 0 0 chr3 1899725 1899790 -216137368 + AluY SINE Alu 237 301 0 1666 210 57 7 chr3 1900661 1901099 -216136059 - MLT1C LTR MaLR 0 467 8 1716 71 5 0 chr3 1901159 1901369 -216135789 + AluY SINE Alu 86 296 -15 11364 119 19 38 chr3 1901393 1901536 -216135622 + Tigger1 DNA MER2_type 1 145 -2273 1090 113 60 0 chr3 1901536 1901704 -216135454 - L1PB3 LINE L1 -1 6153 5976 11364 119 19 38 chr3 1901704 1902298 -216134860 + Tigger1 DNA MER2_type 145 749 -1669 2136 115 30 7 chr3 1902298 1902569 -216134589 + AluSq SINE Alu 1 281 -32 960 122 23 0 chr3 1902569 1902741 -216134417 + GA-rich Low_complexity Low_complexity 3 178 0 2136 115 30 7 chr3 1902741 1902773 -216134385 + AluSq SINE Alu 281 311 -2 11364 119 19 38 chr3 1902773 1904006 -216133152 + Tigger1 DNA MER2_type 749 1934 -484 2186 152 20 93 chr3 1904006 1904499 -216132659 - LTR32 LTR ERVL 0 471 15 2955 140 10 6 chr3 1904499 1904985 -216132173 + Tigger1 DNA MER2_type 1930 2417 -1 434 274 42 53 chr3 1905085 1905275 -216131883 - MIR SINE MIR -36 226 39 315 452 25 0 chr3 1905468 1905625 -216131533 - L2 LINE L2 -12 3260 3100 * 621 292 31 5 chr3 1905623 1905815 -216131343 - MIR SINE MIR -1 261 65 354 304 9 9 chr3 1906018 1906133 -216131025 + MIR SINE MIR 137 251 -11 245 289 22 44 chr3 1906429 1906519 -216130639 + L3 LINE CR1 1488 1575 -2 475 305 72 6 chr3 1907800 1907967 -216129191 + MIR SINE MIR 37 214 -48 783 73 47 80 chr3 1908567 1908582 -216128576 + L1MA5A LINE L1 6153 6167 -130 1827 153 40 35 chr3 1908582 1908955 -216128203 + THE1C LTR MaLR 1 375 0 783 73 47 80 chr3 1908955 1909063 -216128095 + L1MA5A LINE L1 6167 6273 -24 455 105 53 0 chr3 1909063 1909089 -216128069 + MADE1 DNA Mariner 1 24 -56 2312 84 19 10 chr3 1909089 1909397 -216127761 - AluY SINE Alu 0 311 1 455 105 53 0 chr3 1909397 1909446 -216127712 + MADE1 DNA Mariner 24 80 0 783 73 47 80 chr3 1909446 1909471 -216127687 + L1MA5A LINE L1 6273 6297 0 1161 195 20 28 chr3 1910185 1910516 -216126642 - MLT2B3 LTR ERVL 0 554 231 1401 159 39 0 chr3 1910528 1910786 -216126372 - MLT2A2 LTR ERVL -185 268 1 698 296 102 19 chr3 1910880 1911194 -216125964 + MER102b DNA MER1_type 2 341 0 210 288 82 0 chr3 1911296 1911369 -216125789 + L2 LINE L2 3235 3313 0 238 281 67 11 chr3 1911377 1911466 -216125692 - L3 LINE CR1 -522 1055 962 409 309 65 12 chr3 1912694 1912885 -216124273 - MIR SINE MIR -43 219 18 304 272 25 0 chr3 1912995 1913076 -216124082 - MER81 DNA DNA -5 109 27 260 184 0 20 chr3 1913099 1913148 -216124010 - MER81 DNA DNA -66 48 1 2377 124 5 22 chr3 1913327 1913697 -216123461 + THE1B LTR MaLR 1 364 0 294 320 56 8 chr3 1913951 1914076 -216123082 - MIR SINE MIR -29 233 103 355 271 75 0 chr3 1915004 1915137 -216122021 + LTR67 LTR ERVL 403 545 -12 2246 103 3 10 chr3 1915183 1915495 -216121663 - AluSg SINE Alu 0 310 1 1632 167 39 33 chr3 1915581 1915917 -216121241 - MER7A DNA MER2_type -9 337 2 21 0 0 0 chr3 1916073 1916094 -216121064 + AT_rich Low_complexity Low_complexity 1 21 0 205 353 35 12 chr3 1916266 1916351 -216120807 - MIR SINE MIR 0 262 176 496 286 31 26 chr3 1916739 1916931 -216120227 - MIR SINE MIR 0 262 70 1131 179 37 34 chr3 1917145 1917413 -216119745 - L1MB8 LINE L1 -75 6103 5835 186 191 0 0 chr3 1917702 1917744 -216119414 + (TG)n Simple_repeat Simple_repeat 2 43 0 217 89 44 0 chr3 1920687 1920732 -216116426 + (TTA)n Simple_repeat Simple_repeat 2 48 0 186 133 0 0 chr3 1921045 1921075 -216116083 + (T)n Simple_repeat Simple_repeat 1 30 0 286 339 106 21 chr3 1925012 1925201 -216111957 - MIR SINE MIR -21 241 37 419 234 81 16 chr3 1925516 1925640 -216111518 - MIR SINE MIR -18 244 113 584 292 80 56 chr3 1926383 1926722 -216110436 - L1ME4a LINE L1 0 6121 5775 252 268 0 0 chr3 1929757 1929813 -216107345 + L2 LINE L2 3176 3231 -41 2203 137 44 34 chr3 1930015 1930238 -216106920 - MLT1B LTR MaLR 0 390 160 2427 93 3 0 chr3 1930238 1930548 -216106610 - AluSq SINE Alu -2 311 1 2203 137 44 34 chr3 1930548 1930710 -216106448 - MLT1B LTR MaLR -230 160 1 514 343 0 0 chr3 1930871 1931014 -216106144 - MIR3 SINE MIR -23 185 43 213 321 0 0 chr3 1931726 1931782 -216105376 - L2 LINE L2 -5 3308 3253 843 233 110 8 chr3 1932189 1932425 -216104733 - MIR SINE MIR 0 262 3 242 289 47 39 chr3 1932426 1932554 -216104604 - L2 LINE L2 -494 2820 2692 1793 166 7 7 chr3 1933127 1933423 -216103735 + AluJo SINE Alu 5 300 -12 415 279 144 19 chr3 1933732 1933940 -216103218 - L2 LINE L2 -12 3301 3068 324 278 107 47 chr3 1934711 1934880 -216102278 - MIR3 SINE MIR -7 201 23 4720 184 57 16 chr3 1935076 1936162 -216100996 - L1MC4 LINE L1 -5 8037 6907 1000 288 88 22 chr3 1936213 1936457 -216100701 - LTR16C LTR ERVL -22 469 192 2182 165 93 27 chr3 1936457 1936931 -216100227 + MLT1D LTR MaLR 1 505 0 1000 288 88 22 chr3 1936931 1937051 -216100107 - LTR16C LTR ERVL -299 192 81 2690 80 11 16 chr3 1937993 1938369 -216098789 - THE1C LTR MaLR 0 375 2 180 324 25 88 chr3 1938434 1938718 -216098440 + L2 LINE L2 2711 2976 -338 244 295 16 0 chr3 1938880 1938941 -216098217 + L2 LINE L2 3206 3267 -5 448 303 68 19 chr3 1939024 1939110 -216098048 + MIR3 SINE MIR 33 113 -95 20476 58 1 18 chr3 1939110 1942567 -216094591 + L1PA5 LINE L1 2698 6145 -9 448 303 68 19 chr3 1942567 1942642 -216094516 + MIR3 SINE MIR 113 202 -6 562 266 128 21 chr3 1943185 1943373 -216093785 + MIR SINE MIR 18 225 -37 240 381 49 69 chr3 1943387 1943836 -216093322 - L2 LINE L2 -8 3264 2825 189 133 0 0 chr3 1943866 1943896 -216093262 - L2 LINE L2 -4 3309 3280 234 293 73 0 chr3 1943903 1943985 -216093173 - MIR SINE MIR -95 167 80 3042 144 26 0 chr3 1944005 1944505 -216092653 - L1PA16 LINE L1 -2 6164 5652 1339 107 9 0 chr3 1944505 1944721 -216092437 + L1P4 LINE L1 5377 5594 -572 293 328 49 16 chr3 1945049 1945171 -216091987 - MIR SINE MIR -105 157 32 6410 256 85 48 chr3 1945392 1947811 -216089347 + L2 LINE L2 450 2958 -356 858 176 4 106 chr3 1947812 1948039 -216089119 + MER3 DNA MER1_type 6 209 0 979 262 19 52 chr3 1948048 1948372 -216088786 + L2 LINE L2 2966 3278 -35 262 274 16 0 chr3 1948565 1948627 -216088531 + L2 LINE L2 3136 3198 -74 979 157 0 0 chr3 1950394 1950547 -216086611 + FRAM SINE Alu 21 173 -3 377 224 115 51 chr3 1951090 1951246 -216085912 + MIR3 SINE MIR 40 205 -3 762 289 62 55 chr3 1951741 1952194 -216084964 - MLT1K LTR MaLR -64 524 69 834 286 44 8 chr3 1952368 1952620 -216084538 + MIR SINE MIR 2 262 0 289 341 12 0 chr3 1952623 1952708 -216084450 - MIR SINE MIR -93 115 30 630 297 39 0 chr3 1953874 1954056 -216083102 - MIR SINE MIR -48 214 26 2645 171 92 14 chr3 1954119 1954629 -216082529 - MER44D DNA MER2_type 0 605 1 270 383 87 0 chr3 1954703 1954886 -216082272 - MIR SINE MIR 0 262 64 1197 252 20 17 chr3 1954896 1955198 -216081960 + LTR16C LTR ERVL 189 491 0 22 0 0 0 chr3 1956068 1956090 -216081068 + AT_rich Low_complexity Low_complexity 1 22 0 2186 107 3 7 chr3 1956179 1956469 -216080689 + AluSc SINE Alu 1 289 -20 189 0 0 0 chr3 1956871 1956892 -216080266 + (T)n Simple_repeat Simple_repeat 1 21 0 543 285 21 57 chr3 1958016 1958051 -216079107 + MIR3 SINE MIR 19 54 -154 1221 186 91 96 chr3 1958051 1958449 -216078709 + MSTD LTR MaLR 1 396 0 543 285 21 57 chr3 1958449 1958606 -216078552 + MIR3 SINE MIR 54 204 -4 43 47 0 0 chr3 1958621 1958685 -216078473 + AT_rich Low_complexity Low_complexity 1 64 0 25973 107 10 49 chr3 1959283 1965739 -216071419 - L1PA7 LINE L1 0 6154 12 24 32 0 0 chr3 1966314 1966345 -216070813 + AT_rich Low_complexity Low_complexity 1 31 0 564 295 84 40 chr3 1966447 1966698 -216070460 + MIR SINE MIR 1 262 0 372 273 23 34 chr3 1966823 1966999 -216070159 - MER104 DNA Tc2 0 180 7 269 272 65 33 chr3 1967248 1967340 -216069818 - L3 LINE CR1 -7 1570 1476 402 275 261 24 chr3 1967931 1968142 -216069016 - MIR SINE MIR 0 262 2 29 0 0 0 chr3 1968608 1968637 -216068521 + AT_rich Low_complexity Low_complexity 1 29 0 11466 35 19 3 chr3 1968637 1970819 -216066339 - L1PA3 LINE L1 -3 6152 3948 15301 34 1 0 chr3 1970819 1972785 -216064373 + L1PA3 LINE L1 1965 3932 -2214 525 111 0 22 chr3 1972901 1972991 -216064167 + MER53 DNA DNA 102 189 0 1819 196 123 5 chr3 1972991 1973389 -216063769 + MLT1F1 LTR MaLR 123 567 0 2059 111 26 65 chr3 1973529 1973916 -216063242 + THE1C LTR MaLR 1 372 -3 21 71 0 0 chr3 1973999 1974041 -216063117 + AT_rich Low_complexity Low_complexity 1 42 0 232 298 57 79 chr3 1974072 1974242 -216062916 - MIR SINE MIR -56 206 32 2192 123 0 3 chr3 1974384 1974685 -216062473 + AluSg SINE Alu 1 300 -10 2191 148 0 0 chr3 1977166 1977476 -216059682 - AluSx SINE Alu -2 310 1 317 261 114 34 chr3 1978133 1978307 -216058851 - MIR3 SINE MIR -6 202 13 * 541 327 128 0 chr3 1978255 1978466 -216058692 + MIR SINE MIR 23 260 -2 333 238 60 24 chr3 1979116 1979200 -216057958 - MIR SINE MIR -157 105 19 321 26 0 0 chr3 1979379 1979417 -216057741 + (CA)n Simple_repeat Simple_repeat 1 38 0 2386 81 35 3 chr3 1980111 1980455 -216056703 + THE1A LTR MaLR 1 355 0 705 316 50 11 chr3 1981322 1981683 -216055475 + LTR16A LTR ERVL 1 375 -75 658 291 100 9 chr3 1981894 1982114 -216055044 + MIR SINE MIR 23 262 0 1226 83 52 5 chr3 1982265 1982458 -216054700 + MLT2A1 LTR ERVL 3 204 -240 5093 83 0 0 chr3 1982458 1983153 -216054005 - L1PA4 LINE L1 -5450 696 2 * 36236 38 4 4 chr3 1983146 1988619 -216048539 + L1PA4 LINE L1 685 6152 -3 1490 97 26 4 chr3 1988656 1988882 -216048276 + MLT2A1 LTR ERVL 214 444 0 428 257 60 49 chr3 1989420 1989632 -216047526 + MLT1L LTR MaLR 366 605 -8 302 302 7 64 chr3 1989732 1989858 -216047300 - MIR3 SINE MIR -41 167 45 288 185 37 0 chr3 1989861 1989915 -216047243 - L2 LINE L2 0 3272 3217 269 313 86 31 chr3 1990773 1990901 -216046257 + MER5A DNA MER1_type 55 189 0 * 279 215 51 51 chr3 1990901 1990955 -216046203 - MIR3 SINE MIR -47 161 108 189 345 18 0 chr3 1991149 1991204 -216045954 - L2 LINE L2 -17 3296 3241 606 297 109 17 chr3 1993969 1994208 -216042950 + MIR SINE MIR 2 262 0 195 328 50 34 chr3 1994291 1994410 -216042748 - MIR SINE MIR -95 167 47 189 203 68 0 chr3 1995876 1995935 -216041223 + L2 LINE L2 1644 1706 -1608 588 279 66 44 chr3 1996049 1996368 -216040790 + MLT1I LTR MaLR 63 388 -21 1393 296 84 32 chr3 1996410 1997028 -216040130 + L2 LINE L2 1801 2450 -864 1267 188 26 0 chr3 1997029 1997258 -216039900 + MLT1C LTR MaLR 233 467 0 378 266 64 0 chr3 1999818 1999912 -216037246 - MIR SINE MIR -116 146 47 479 283 20 26 chr3 2000211 2000363 -216036795 - MIR3 SINE MIR -24 184 34 484 271 33 20 chr3 2001344 2001495 -216035663 - MIR3 SINE MIR -16 192 40 530 343 41 0 chr3 2001501 2001720 -216035438 - LTR16C LTR ERVL 0 491 264 2451 173 70 10 chr3 2002063 2002549 -216034609 - MLT2B2 LTR ERVL 0 515 1 2587 169 25 17 chr3 2002549 2003215 -216033943 - ERVL LTR ERVL 0 5654 5007 553 163 0 0 chr3 2003215 2003307 -216033851 - MLT2B1 LTR ERVL -428 92 1 539 287 80 49 chr3 2003440 2003764 -216033394 - MLT1K LTR MaLR 0 588 255 680 258 62 0 chr3 2003820 2003998 -216033160 - MER5A DNA MER1_type 0 189 1 421 141 16 132 chr3 2004022 2004143 -216033015 - MLT1K LTR MaLR -448 107 1 399 317 36 22 chr3 2004191 2004547 -216032611 + L1MEc LINE L1 1294 1654 -4742 2696 279 38 27 chr3 2004557 2005446 -216031712 + L1MEc LINE L1 3032 3946 -2269 1673 188 0 24 chr3 2005446 2005734 -216031424 + AluJo SINE Alu 11 291 -21 2696 279 38 27 chr3 2005734 2006340 -216030818 + L1MEc LINE L1 3946 4544 -1671 4913 227 42 16 chr3 2006342 2008189 -216028969 + L1MCa LINE L1 575 2662 -3945 1268 235 40 0 chr3 2008200 2008595 -216028563 + L1MCa LINE L1 3308 3718 -2708 1665 56 8 0 chr3 2008601 2008835 -216028323 + L1P LINE L1 4872 5107 -1039 213 136 45 0 chr3 2008835 2008901 -216028257 + (TA)n Simple_repeat Simple_repeat 2 70 0 6809 62 5 0 chr3 2008903 2010394 -216026764 - L1PA6 LINE L1 -13 6141 4643 5344 39 5 3 chr3 2010394 2011040 -216026118 - L1PA5 LINE L1 -2 6152 5506 28060 97 7 8 chr3 2011042 2015703 -216021455 - L1PA6 LINE L1 -1494 4652 1 320 248 0 0 chr3 2015742 2015830 -216021328 + L1PB4 LINE L1 6072 6149 -7 14183 159 29 8 chr3 2015845 2017903 -216019255 - L1MA1 LINE L1 0 7721 5557 1838 183 0 3 chr3 2017903 2018204 -216018954 - AluSx SINE Alu -12 300 1 14183 159 29 8 chr3 2018204 2019950 -216017208 - L1MA1 LINE L1 -2164 5557 3849 1859 209 57 90 chr3 2019951 2020516 -216016642 + MLT2B3 LTR ERVL 1 546 -8 10552 130 24 7 chr3 2020520 2022456 -216014702 - L1MA1 LINE L1 -3713 3852 1881 1761 163 14 20 chr3 2022457 2022801 -216014357 + L1MC1 LINE L1 5272 5613 -720 2296 169 11 13 chr3 2022804 2023253 -216013905 + L1MA7 LINE L1 5842 6289 -2 3822 153 28 36 chr3 2023270 2023693 -216013465 + L1MC1 LINE L1 5595 6011 -322 2046 145 0 7 chr3 2023693 2023997 -216013161 - AluSx SINE Alu -10 302 1 3822 153 28 36 chr3 2023997 2024318 -216012840 + L1MC1 LINE L1 6011 6333 0 634 241 42 87 chr3 2024323 2024725 -216012433 + L1ME3A LINE L1 4475 4858 -1288 244 300 85 0 chr3 2024732 2024862 -216012296 + L1ME3A LINE L1 5006 5146 -1000 4443 133 27 13 chr3 2024863 2025612 -216011546 + Tigger2 DNA MER2_type 1 759 -1959 1117 167 73 29 chr3 2025667 2025852 -216011306 + Tigger2 DNA MER2_type 2453 2653 -55 2262 116 0 0 chr3 2025852 2026154 -216011004 - AluSq SINE Alu -11 302 1 1117 167 73 29 chr3 2026154 2026213 -216010945 + Tigger2 DNA MER2_type 2653 2708 0 696 257 32 24 chr3 2026215 2026532 -216010626 + L1ME3A LINE L1 5148 5468 -696 313 236 67 0 chr3 2026540 2026629 -216010529 - L1MA9 LINE L1 -38 6274 6180 2074 123 0 10 chr3 2026629 2026921 -216010237 + AluSx SINE Alu 1 289 -23 1044 123 21 48 chr3 2026936 2027143 -216010015 + AluSq SINE Alu 132 313 0 2722 183 57 37 chr3 2027170 2027786 -216009372 - L1MA9 LINE L1 -181 6131 5504 1870 242 83 44 chr3 2027774 2028435 -216008723 + L1ME3A LINE L1 5448 6134 -36 * 23 54 0 0 chr3 2029024 2029061 -216008097 + AT_rich Low_complexity Low_complexity 1 37 0 188 208 75 0 chr3 2029096 2029149 -216008009 - MIR SINE MIR -107 155 99 328 277 149 0 chr3 2029151 2029245 -216007913 + MIR3 SINE MIR 89 196 -12 236 216 91 80 chr3 2030200 2030288 -216006870 - MIR SINE MIR -68 140 52 234 219 0 0 chr3 2030462 2030526 -216006632 + (TA)n Simple_repeat Simple_repeat 2 65 0 931 292 67 49 chr3 2031548 2032058 -216005100 - MLT1K LTR MaLR -60 528 10 26 74 0 0 chr3 2032335 2032389 -216004769 + AT_rich Low_complexity Low_complexity 1 54 0 30 0 0 0 chr3 2032717 2032747 -216004411 + AT_rich Low_complexity Low_complexity 1 30 0 2286 107 0 10 chr3 2032933 2033242 -216003916 - AluSx SINE Alu -6 306 1 194 283 110 55 chr3 2034842 2034987 -216002171 + MIR3 SINE MIR 44 196 -12 332 323 26 42 chr3 2035140 2035332 -216001826 + MIR SINE MIR 1 189 -73 2235 120 17 6 chr3 2035551 2035908 -216001250 + MER46B DNA MER2_type 1 236 0 207 306 10 31 chr3 2036632 2036730 -216000428 - MIR SINE MIR 0 262 167 42718 32 21 2 chr3 2036754 2042788 -215994370 + L1HS LINE L1 3 6155 0 266 268 85 12 chr3 2042793 2042875 -215994283 - MIR SINE MIR -133 129 42 936 300 129 12 chr3 2042945 2043435 -215993723 + MLT1H1 LTR MaLR 1 547 -8 258 200 0 33 chr3 2043663 2043723 -215993435 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 545 312 41 45 chr3 2044543 2044812 -215992346 + MLT1K LTR MaLR 317 584 -4 2399 43 13 0 chr3 2044892 2045219 -215991939 + L1PA3 LINE L1 5849 6179 0 2278 89 0 40 chr3 2045362 2045687 -215991471 - AluSx SINE Alu 0 312 1 342 0 0 0 chr3 2046610 2046648 -215990510 + (A)n Simple_repeat Simple_repeat 1 38 0 1171 266 110 39 chr3 2046967 2047629 -215989529 - L2 LINE L2 -6 3307 2608 1085 214 57 21 chr3 2047634 2047965 -215989193 - L1MEc LINE L1 -4330 2066 1724 7022 26 0 0 chr3 2047968 2048780 -215988378 - L1PA3 LINE L1 0 6155 5344 3374 300 55 24 chr3 2048782 2050377 -215986781 - L1MEc LINE L1 -4675 1721 77 324 227 57 102 chr3 2050380 2050556 -215986602 - MIR3 SINE MIR -22 186 19 405 157 0 14 chr3 2050581 2050651 -215986507 - MLT1C LTR MaLR -1 466 398 1910 150 0 0 chr3 2050657 2050931 -215986227 + AluSx SINE Alu 1 274 -38 807 66 0 0 chr3 2050931 2051037 -215986121 + (GGAA)n Simple_repeat Simple_repeat 2 107 0 900 151 0 0 chr3 2051048 2051174 -215985984 + AluSg/x SINE Alu 146 271 -39 234 105 0 0 chr3 2051180 2051218 -215985940 + (GA)n Simple_repeat Simple_repeat 1 38 0 1413 228 27 49 chr3 2051222 2051630 -215985528 - MLT1C LTR MaLR -62 405 7 346 268 167 24 chr3 2053002 2053170 -215983988 - MIR3 SINE MIR -7 201 10 1186 295 164 15 chr3 2053193 2054033 -215983125 + L2 LINE L2 2116 3082 -231 2238 110 7 0 chr3 2054231 2054531 -215982627 - AluSq SINE Alu -11 302 1 1046 173 0 0 chr3 2054564 2054726 -215982432 - FAM SINE Alu -12 163 2 337 322 77 11 chr3 2058023 2058206 -215978952 + L2 LINE L2 3118 3312 -1 473 198 16 24 chr3 2061294 2061420 -215975738 + L1ME4a LINE L1 5993 6117 -4 21 0 0 0 chr3 2061966 2061987 -215975171 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 2062243 2062264 -215974894 + AT_rich Low_complexity Low_complexity 1 21 0 355 370 79 46 chr3 2062929 2063232 -215973926 - L2 LINE L2 -18 3254 2942 225 273 116 88 chr3 2063391 2063607 -215973551 + L2 LINE L2 2925 3146 -126 1084 215 66 78 chr3 2064614 2064635 -215972523 - MLT1B LTR MaLR 0 390 370 1942 185 25 3 chr3 2064635 2064992 -215972166 - MLT1A1 LTR MaLR 0 365 1 1084 215 66 78 chr3 2064992 2065365 -215971793 - MLT1B LTR MaLR -20 370 1 623 87 19 0 chr3 2065373 2065476 -215971682 + (TGGA)n Simple_repeat Simple_repeat 3 107 0 554 149 0 9 chr3 2065476 2065583 -215971575 + (GGGA)n Simple_repeat Simple_repeat 3 108 0 208 260 0 0 chr3 2065752 2065802 -215971356 - L2 LINE L2 -8 3305 3256 465 269 51 32 chr3 2065883 2066039 -215971119 - MER5B DNA MER1_type -1 177 19 1744 238 97 33 chr3 2066999 2067638 -215969520 + MER20B DNA MER1_type 96 775 -8 214 208 0 38 chr3 2067949 2068002 -215969156 - MIR SINE MIR -51 211 161 10018 86 13 1 chr3 2068024 2070190 -215966968 - L1PA7 LINE L1 -2 6152 3969 8740 98 30 9 chr3 2070190 2071578 -215965580 + L1PA7 LINE L1 2546 3963 -2183 212 348 102 0 chr3 2071582 2071700 -215965458 - MIR SINE MIR -108 154 25 499 257 22 15 chr3 2072376 2072512 -215964646 + MER117 DNA MER1_type 8 144 -53 275 297 0 0 chr3 2072597 2072661 -215964497 - MIR SINE MIR -64 144 81 2805 19 0 0 chr3 2072662 2072975 -215964183 + AluYb8 SINE Alu 1 313 -5 3808 90 8 4 chr3 2073006 2073538 -215963620 + L1PA14 LINE L1 5627 6160 -1 243 290 40 10 chr3 2073627 2073727 -215963431 - MIR SINE MIR -23 239 137 291 65 87 0 chr3 2074992 2075038 -215962120 + MADE1 DNA Mariner 4 53 -27 372 295 132 44 chr3 2075111 2075252 -215961906 - MIR SINE MIR -1 261 91 2387 106 3 0 chr3 2075252 2075563 -215961595 + AluSp SINE Alu 1 312 -1 372 295 132 44 chr3 2075563 2075648 -215961510 - MIR SINE MIR -171 91 15 192 77 0 0 chr3 2076012 2076038 -215961120 + (GAAAA)n Simple_repeat Simple_repeat 3 28 0 225 302 58 12 chr3 2076653 2076739 -215960419 + MIR SINE MIR 25 114 -148 364 325 98 0 chr3 2076999 2077162 -215959996 - MIR SINE MIR -1 261 83 415 126 11 23 chr3 2077589 2077676 -215959482 + (GGGA)n Simple_repeat Simple_repeat 1 86 0 1038 265 63 66 chr3 2077850 2078292 -215958866 + L2 LINE L2 2873 3313 0 215 224 17 17 chr3 2078297 2078355 -215958803 - MIR SINE MIR -123 139 82 283 306 231 27 chr3 2078381 2078675 -215958483 + L2 LINE L2 2910 3263 -50 217 368 0 0 chr3 2078700 2078776 -215958382 + MIR SINE MIR 185 260 -2 934 158 20 0 chr3 2079705 2079851 -215957307 - FAM SINE Alu -14 171 23 294 264 0 11 chr3 2080736 2080827 -215956331 + (TATATG)n Simple_repeat Simple_repeat 4 93 0 486 0 0 0 chr3 2081145 2081199 -215955959 + (CA)n Simple_repeat Simple_repeat 2 55 0 228 35 0 0 chr3 2081515 2081544 -215955614 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1270 166 107 112 chr3 2081558 2081950 -215955208 + MLT1B LTR MaLR 1 390 0 209 290 108 21 chr3 2082554 2082647 -215954511 + L3 LINE CR1 1383 1483 -94 * 234 318 91 45 chr3 2082640 2082772 -215954386 - L2 LINE L2 0 3313 3176 2219 108 0 3 chr3 2083158 2083454 -215953704 + AluSc SINE Alu 2 296 -13 322 304 77 0 chr3 2084221 2084389 -215952769 + L1ME4a LINE L1 5636 5816 -305 414 275 133 38 chr3 2084476 2084716 -215952442 + L1ME4a LINE L1 5856 6118 -3 287 309 11 11 chr3 2084891 2084985 -215952173 + MIR3 SINE MIR 109 202 -6 315 281 22 50 chr3 2085159 2085298 -215951860 - MIR3 SINE MIR -20 188 54 5166 146 9 25 chr3 2085571 2086673 -215950485 + L1PA16 LINE L1 4686 5762 -404 2216 129 0 37 chr3 2086673 2087022 -215950136 - MER1B DNA MER1_type 0 337 2 5166 146 9 25 chr3 2087022 2087376 -215949782 + L1PA16 LINE L1 5762 6120 -46 7133 128 52 2 chr3 2087389 2088608 -215948550 - HSMAR2 DNA Mariner -22 1280 2 420 307 14 43 chr3 2088759 2088899 -215948259 + MIR3 SINE MIR 4 139 -69 331 328 0 73 chr3 2089035 2089212 -215947946 - L2 LINE L2 -227 3045 2882 215 200 122 78 chr3 2090148 2090238 -215946920 + L3 LINE CR1 295 388 -1189 3494 42 0 5 chr3 2090727 2091156 -215946002 - L1PA5 LINE L1 0 6154 5728 3621 35 29 3 chr3 2091158 2091794 -215945364 + L1PA5 LINE L1 5087 5735 -419 1556 201 223 2 chr3 2091845 2092257 -215944901 - MLT1F LTR MaLR 0 542 40 193 194 0 0 chr3 2092297 2092333 -215944825 - L2 LINE L2 -9 3304 3269 274 336 141 32 chr3 2092789 2093336 -215943822 - L2 LINE L2 -7 3306 2703 2162 113 0 7 chr3 2093889 2094191 -215942967 + AluSx SINE Alu 1 300 -12 631 293 96 29 chr3 2094629 2094974 -215942184 - LTR16C LTR ERVL -34 457 90 22 35 0 0 chr3 2095115 2095144 -215942014 + AT_rich Low_complexity Low_complexity 1 29 0 585 259 113 29 chr3 2095413 2095652 -215941506 + MIR SINE MIR 1 259 -3 444 314 182 0 chr3 2095859 2096079 -215941079 + MIR SINE MIR 3 262 0 364 222 99 0 chr3 2096086 2096167 -215940991 - L2 LINE L2 -4 3268 3180 204 216 0 0 chr3 2096301 2096352 -215940806 + GA-rich Low_complexity Low_complexity 4 54 0 387 333 80 12 chr3 2096903 2097065 -215940093 - MIR SINE MIR -56 206 34 734 165 0 24 chr3 2097223 2097341 -215939817 + FLAM_A SINE Alu 1 117 -185 294 73 0 0 chr3 2097341 2097382 -215939776 + (CA)n Simple_repeat Simple_repeat 2 42 0 829 222 46 62 chr3 2098242 2098323 -215938835 + MER33 DNA MER1_type 1 82 -2503 1865 189 38 53 chr3 2098323 2098773 -215938385 + LTR47B LTR ERVL 1 443 0 829 222 46 62 chr3 2098773 2098997 -215938161 + MER33 DNA MER1_type 82 301 -23 229 330 43 0 chr3 2099950 2100065 -215937093 + MIR3 SINE MIR 37 156 -52 608 274 18 50 chr3 2100619 2100838 -215936320 - MIR SINE MIR -20 242 31 232 388 106 0 chr3 2101878 2102066 -215935092 - MIR SINE MIR -2 260 53 229 314 108 29 chr3 2102120 2102222 -215934936 + MIR SINE MIR 34 143 -65 326 262 172 21 chr3 2102263 2102408 -215934750 + MIR SINE MIR 36 202 -60 394 56 0 0 chr3 2102413 2102467 -215934691 - MLT2A1 LTR ERVL 0 444 391 321 310 0 0 chr3 2102468 2102555 -215934603 - L1MC4 LINE L1 -1342 6700 6614 318 292 11 0 chr3 2102527 2102616 -215934542 + L1MC4 LINE L1 6614 6703 -1339 * 208 151 57 0 chr3 2102617 2102670 -215934488 + (TA)n Simple_repeat Simple_repeat 2 57 0 2083 145 5 30 chr3 2102683 2103056 -215934102 - THE1B LTR MaLR 0 364 1 233 238 71 36 chr3 2103340 2103424 -215933734 + MIR SINE MIR 96 182 -80 532 276 13 26 chr3 2103824 2103980 -215933178 + MIR SINE MIR 2 155 -107 2048 234 90 22 chr3 2104013 2104590 -215932568 + MLT1E2 LTR MaLR 1 616 -10 286 235 82 0 chr3 2104819 2104904 -215932254 - MIR SINE MIR -65 197 106 234 307 183 7 chr3 2105492 2105645 -215931513 + MER5A DNA MER1_type 9 188 -1 853 281 139 22 chr3 2106200 2106652 -215930506 - MLT1D LTR MaLR 0 505 1 231 233 97 29 chr3 2106763 2106866 -215930292 + MIR SINE MIR 139 248 -14 216 0 0 0 chr3 2107879 2107903 -215929255 + (A)n Simple_repeat Simple_repeat 1 24 0 5627 203 44 8 chr3 2108519 2109826 -215927332 - L1PA12 LINE L1 -4827 2754 1688 3810 0 0 0 chr3 2110251 2110693 -215926465 - L1HS LINE L1 0 6155 5714 1189 106 4 65 chr3 2110739 2110768 -215926390 + L1MA9 LINE L1 6082 6111 -201 1590 194 31 17 chr3 2110768 2111057 -215926101 + AluJo SINE Alu 1 293 -19 1189 106 4 65 chr3 2111057 2111272 -215925886 + L1MA9 LINE L1 6111 6311 -1 679 291 131 43 chr3 2111467 2111842 -215925316 + L3 LINE CR1 623 1030 -547 226 333 0 0 chr3 2111897 2111954 -215925204 + L3 LINE CR1 1409 1465 -112 2232 126 3 0 chr3 2112091 2112401 -215924757 - AluSx SINE Alu -1 311 1 281 297 55 55 chr3 2113080 2113245 -215923913 + MIR SINE MIR 52 216 -46 295 284 35 71 chr3 2113280 2113311 -215923847 - MIR SINE MIR -58 204 173 2395 133 22 38 chr3 2113311 2113349 -215923809 + MER65A LTR ERV1 2 39 -406 204 97 0 0 chr3 2113349 2113380 -215923778 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2395 133 22 38 chr3 2113380 2113792 -215923366 + MER65A LTR ERV1 39 445 0 295 284 35 71 chr3 2113792 2113901 -215923257 - MIR SINE MIR -89 173 69 405 281 96 46 chr3 2114008 2114353 -215922805 + LTR33 LTR ERVL 93 454 -67 329 291 45 27 chr3 2116004 2116050 -215921108 + MIR SINE MIR 95 139 -123 1211 206 75 54 chr3 2116050 2116400 -215920758 + MLT2C1 LTR ERVL 1 361 -36 411 56 0 0 chr3 2116400 2116454 -215920704 + (TCCA)n Simple_repeat Simple_repeat 3 56 0 1211 206 75 54 chr3 2116454 2116492 -215920666 + MLT2C1 LTR ERVL 361 397 0 329 291 45 27 chr3 2116492 2116555 -215920603 + MIR SINE MIR 139 206 -56 829 224 0 12 chr3 2116933 2117098 -215920060 + FRAM SINE Alu 1 162 -14 504 253 93 0 chr3 2117346 2117496 -215919662 + MLT1J2 LTR MaLR 18 181 -269 983 293 96 48 chr3 2117508 2118376 -215918782 + L2 LINE L2 2357 3253 -60 187 351 13 0 chr3 2118377 2118454 -215918704 + MIR3 SINE MIR 84 161 -47 616 298 46 21 chr3 2118890 2119128 -215918030 - MIR SINE MIR -16 246 3 187 352 14 14 chr3 2119177 2119248 -215917910 + L2 LINE L2 2991 3061 -211 287 319 220 5 chr3 2119320 2119511 -215917647 - MIR SINE MIR -3 259 28 223 363 124 0 chr3 2119829 2119942 -215917216 + L2 LINE L2 3183 3309 -4 742 301 153 17 chr3 2120105 2120464 -215916694 - MLT1I LTR MaLR 0 409 2 4280 164 47 6 chr3 2120499 2121287 -215915871 - LTR1B LTR ERV1 0 826 7 291 195 158 0 chr3 2121399 2121481 -215915677 + MIR SINE MIR 91 185 -77 2045 141 0 22 chr3 2121489 2121808 -215915350 + AluJb SINE Alu 1 312 0 200 239 22 0 chr3 2121855 2121901 -215915257 + L2 LINE L2 3210 3256 -16 1615 190 22 28 chr3 2123042 2123409 -215913749 - MLT1A1 LTR MaLR 0 467 1 405 141 256 0 chr3 2123756 2123834 -215913324 - Tigger1 DNA MER2_type 0 2418 2321 * 4549 135 7 0 chr3 2123832 2124559 -215912599 - Tigger1 DNA MER2_type -1659 759 28 536 287 23 6 chr3 2125813 2125987 -215911171 - MIR SINE MIR -10 252 76 242 344 10 0 chr3 2126308 2126404 -215910754 - MIR SINE MIR 0 262 166 1912 162 43 94 chr3 2126422 2126501 -215910657 - MLT1D LTR MaLR 0 505 424 1711 191 47 7 chr3 2126501 2126799 -215910359 - AluJo SINE Alu -2 310 1 1912 162 43 94 chr3 2126799 2127249 -215909909 - MLT1D LTR MaLR -81 424 3 27 29 0 0 chr3 2127388 2127422 -215909736 + AT_rich Low_complexity Low_complexity 1 34 0 1426 211 68 4 chr3 2127422 2127702 -215909456 + AluJo SINE Alu 1 298 -14 303 269 17 25 chr3 2127702 2127769 -215909389 + L1ME4a LINE L1 6001 6068 -53 2409 78 0 16 chr3 2127769 2128076 -215909082 - AluY SINE Alu -9 302 1 303 269 17 25 chr3 2128076 2128127 -215909031 + L1ME4a LINE L1 6068 6118 -3 365 321 14 29 chr3 2128531 2128671 -215908487 + MIR SINE MIR 52 189 -73 224 161 195 81 chr3 2128848 2128935 -215908223 - MIR SINE MIR -146 116 20 234 250 0 50 chr3 2128988 2129048 -215908110 - MIR SINE MIR -133 75 19 * 849 267 49 20 chr3 2129019 2129266 -215907892 - MIR SINE MIR -7 255 2 361 318 91 86 chr3 2130615 2131212 -215905946 - L2 LINE L2 -2 3270 2652 546 226 80 15 chr3 2131332 2131469 -215905689 + MIR SINE MIR 9 154 -108 1077 234 36 39 chr3 2131476 2131784 -215905374 - MER46C DNA MER2_type -20 318 12 364 177 63 0 chr3 2131795 2131874 -215905284 + MIR SINE MIR 153 236 -26 265 235 59 0 chr3 2131938 2132006 -215905152 + MIR3 SINE MIR 126 197 -11 1801 150 119 0 chr3 2132089 2132197 -215904961 - MER57A LTR ERV1 0 403 309 3348 129 2 2 chr3 2132197 2132694 -215904464 + LOR1a LTR ERV1 1 497 0 1801 150 119 0 chr3 2132694 2132945 -215904213 - MER57A LTR ERV1 -94 309 1 339 255 0 103 chr3 2133294 2133439 -215903719 + MIR SINE MIR 77 206 -56 3457 113 10 8 chr3 2133483 2133987 -215903171 - MER84 LTR ERV1 0 507 3 3184 138 123 7 chr3 2134129 2134730 -215902428 + LTR51 LTR ERV1 1 671 0 190 239 0 22 chr3 2134753 2134799 -215902359 - MIR SINE MIR -36 226 182 188 233 0 0 chr3 2135017 2135060 -215902098 - MIR SINE MIR -102 160 118 3914 132 16 3 chr3 2135075 2135702 -215901456 + MER41B LTR ERV1 1 635 0 251 119 0 0 chr3 2135711 2135753 -215901405 + Alu SINE Alu 187 228 -73 227 211 135 0 chr3 2135758 2135810 -215901348 - MIR SINE MIR -199 63 5 329 291 48 0 chr3 2136687 2136790 -215900368 - MIR SINE MIR 0 262 155 696 264 40 54 chr3 2136892 2137168 -215899990 - LTR33 LTR ERVL -249 272 1 1953 164 67 42 chr3 2137417 2137867 -215899291 + LOR1b LTR ERV1 1 461 0 635 333 87 45 chr3 2138223 2138601 -215898557 - ERVL LTR ERVL -661 4866 4431 371 301 103 7 chr3 2138951 2139087 -215898071 - MIR SINE MIR -108 154 6 1293 148 40 37 chr3 2139362 2139687 -215897471 - MER33 DNA MER1_type -5 319 1 180 0 0 0 chr3 2139787 2139807 -215897351 + (GAA)n Simple_repeat Simple_repeat 2 21 0 224 296 133 20 chr3 2139909 2140007 -215897151 - MIR SINE MIR -134 128 20 183 80 0 0 chr3 2140014 2140039 -215897119 + (TAA)n Simple_repeat Simple_repeat 2 26 0 3110 184 50 72 chr3 2140339 2140667 -215896491 + MER45B DNA AcHobo 2 336 -704 5327 80 27 1 chr3 2140667 2141414 -215895744 + MER4E LTR ERV1 1 766 0 3110 184 50 72 chr3 2141414 2141659 -215895499 + MER45B DNA AcHobo 336 554 -486 2220 109 13 0 chr3 2141659 2141961 -215895197 - AluY SINE Alu -5 306 1 3110 184 50 72 chr3 2141961 2142200 -215894958 + MER45B DNA AcHobo 554 797 -243 32516 97 8 38 chr3 2142211 2147748 -215889410 + L1PA6 LINE L1 11 5336 -818 2426 62 0 16 chr3 2147748 2148053 -215889105 + AluY SINE Alu 1 300 -11 32516 97 8 38 chr3 2148053 2148841 -215888317 + L1PA6 LINE L1 5336 6146 -8 1305 141 32 8 chr3 2148841 2149090 -215888068 + MER45B DNA AcHobo 786 1040 0 340 289 0 10 chr3 2149105 2149202 -215887956 - MER117 DNA MER1_type -34 163 68 768 230 57 97 chr3 2149557 2149641 -215887517 - MIR SINE MIR -7 255 169 674 140 0 113 chr3 2149641 2149791 -215887367 + FLAM_C SINE Alu 1 133 0 768 230 57 97 chr3 2149791 2149954 -215887204 - MIR SINE MIR -93 169 18 245 195 0 0 chr3 2150297 2150338 -215886820 - L3 LINE CR1 -10 1567 1527 343 253 142 37 chr3 2150339 2150501 -215886657 + MER117 DNA MER1_type 1 179 -18 568 343 55 17 chr3 2150508 2150744 -215886414 + MIR SINE MIR 2 246 -16 255 286 39 26 chr3 2150842 2150919 -215886239 - MIR3 SINE MIR -48 160 83 387 255 33 72 chr3 2150941 2151094 -215886064 + MIR3 SINE MIR 35 181 -27 303 276 0 13 chr3 2151785 2151861 -215885297 + tRNA-Thr-ACA tRNA tRNA 1 75 -1 752 261 71 14 chr3 2151878 2152089 -215885069 + MIR SINE MIR 3 225 -37 201 250 44 59 chr3 2152135 2152203 -215884955 + L2 LINE L2 1366 1432 -1882 * 370 253 0 141 chr3 2152159 2152329 -215884829 - MIR3 SINE MIR -60 148 3 206 319 160 25 chr3 2152360 2152479 -215884679 + L2 LINE L2 3171 3305 -8 488 294 86 12 chr3 2152565 2152728 -215884430 + MIR SINE MIR 1 175 -87 515 214 26 0 chr3 2152749 2152866 -215884292 + MLT2C1 LTR ERVL 1 120 -277 569 168 81 46 chr3 2153037 2153210 -215883948 + L1MC4 LINE L1 7858 8036 -6 1815 155 3 21 chr3 2153218 2153508 -215883650 + AluJb SINE Alu 3 287 -25 43 47 0 0 chr3 2153513 2153577 -215883581 + AT_rich Low_complexity Low_complexity 1 64 0 22 35 0 0 chr3 2153671 2153700 -215883458 + AT_rich Low_complexity Low_complexity 1 29 0 186 311 90 25 chr3 2154690 2154812 -215882346 - L2 LINE L2 -15 3298 3169 345 234 62 23 chr3 2154907 2155035 -215882123 + HAL1b LINE L1 1216 1348 0 413 193 48 0 chr3 2157367 2157450 -215879708 + MIR3 SINE MIR 82 168 -40 315 264 101 39 chr3 2157477 2157619 -215879539 + MIR SINE MIR 30 145 -63 2208 129 33 30 chr3 2157685 2158048 -215879110 + THE1B LTR MaLR 1 364 0 228 240 72 40 chr3 2158208 2158307 -215878851 + MIR SINE MIR 34 145 -73 399 282 215 19 chr3 2158318 2158527 -215878631 - MIR SINE MIR -1 261 12 228 93 233 0 chr3 2158529 2158572 -215878586 - Charlie1 DNA MER1_type 0 2761 2709 * 453 160 19 19 chr3 2158564 2158670 -215878488 - Charlie1 DNA MER1_type -208 2553 2448 548 279 37 81 chr3 2159446 2159743 -215877415 + L2 LINE L2 2994 3277 -36 226 143 41 20 chr3 2159919 2159968 -215877190 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 502 231 26 8 chr3 2161051 2161168 -215875990 + L2 LINE L2 3154 3272 0 4500 168 37 30 chr3 2161199 2161889 -215875269 + MER6 DNA MER2_type 1 700 -165 1455 119 92 12 chr3 2161889 2162140 -215875018 + AluSg SINE Alu 40 310 0 4500 168 37 30 chr3 2162140 2162308 -215874850 + MER6 DNA MER2_type 700 865 0 247 312 27 54 chr3 2163295 2163481 -215873677 + MIR3 SINE MIR 16 196 -12 612 322 45 25 chr3 2164049 2164294 -215872864 + MIR SINE MIR 13 262 0 271 377 29 58 chr3 2165285 2165561 -215871597 - L2 LINE L2 0 3272 3005 346 262 98 8 chr3 2165582 2165704 -215871454 - MER94 DNA DNA -1 133 1 473 305 145 15 chr3 2167769 2168031 -215869127 - MER102a DNA MER1_type -3 327 32 2338 90 0 7 chr3 2168300 2168610 -215868548 + AluSx SINE Alu 1 308 -4 7082 159 33 43 chr3 2170292 2172739 -215864419 + L1MA6 LINE L1 3791 6214 -86 2215 119 43 27 chr3 2172839 2173208 -215863950 - THE1C LTR MaLR 0 375 1 225 344 47 0 chr3 2173702 2173766 -215863392 + L2 LINE L2 3114 3180 -92 186 137 68 14 chr3 2173845 2173918 -215863240 + GA-rich Low_complexity Low_complexity 2 78 0 2309 112 0 7 chr3 2173950 2174253 -215862905 - AluSx SINE Alu -11 301 1 371 300 106 11 chr3 2174687 2174867 -215862291 - MIR SINE MIR 0 262 66 460 250 75 42 chr3 2175063 2175087 -215862071 + LTR33 LTR ERVL 3 25 -496 2002 142 44 33 chr3 2175087 2175447 -215861711 + THE1B LTR MaLR 1 364 0 460 250 75 42 chr3 2175447 2175634 -215861524 + LTR33 LTR ERVL 25 221 -300 270 56 0 0 chr3 2175697 2175733 -215861425 + (TC)n Simple_repeat Simple_repeat 1 36 0 2725 141 16 22 chr3 2175877 2176387 -215860771 + L1MA7 LINE L1 5613 6119 -172 316 317 178 26 chr3 2176974 2177204 -215859954 - L1MC4a LINE L1 -1928 5880 5616 232 319 11 85 chr3 2178449 2178543 -215858615 - MIR3 SINE MIR -110 98 12 569 256 0 0 chr3 2178702 2178823 -215858335 + FRAM SINE Alu 1 121 -55 242 132 0 0 chr3 2179093 2179131 -215858027 - MER112 DNA MER1_type 0 260 223 17634 44 2 0 chr3 2179141 2181424 -215855734 - L1P LINE L1 -3178 2968 683 5212 32 0 2 chr3 2181424 2182039 -215855119 + L1PA5 LINE L1 5541 6154 0 1190 194 8 25 chr3 2182142 2182379 -215854779 + MER8 DNA MER2_type 7 239 0 304 249 16 124 chr3 2182384 2182470 -215854688 - MER112 DNA MER1_type -88 172 117 2040 88 0 76 chr3 2182470 2182787 -215854371 + AluSc SINE Alu 1 293 -16 304 249 16 124 chr3 2182787 2182893 -215854265 - MER112 DNA MER1_type -143 117 1 1192 77 4 170 chr3 2184114 2184284 -215852874 - L1MA4A LINE L1 -21 6282 6168 1559 186 18 7 chr3 2184284 2184559 -215852599 + AluJo SINE Alu 3 280 -32 1192 77 4 170 chr3 2184559 2184647 -215852511 - L1MA4A LINE L1 -135 6168 6067 3414 159 78 46 chr3 2185935 2186694 -215850464 + LTR1 LTR ERV1 1 783 -2 458 284 50 45 chr3 2187088 2187289 -215849869 - MIR SINE MIR -47 215 14 22 0 0 0 chr3 2188209 2188231 -215848927 + AT_rich Low_complexity Low_complexity 1 22 0 222 276 169 34 chr3 2188564 2188772 -215848386 + MIR SINE MIR 9 251 -11 426 234 89 27 chr3 2189257 2189514 -215847644 + HAL1 LINE L1 981 1253 -1254 254 235 12 47 chr3 2189503 2189588 -215847570 + HAL1 LINE L1 2420 2501 -6 * 398 333 210 26 chr3 2189601 2190186 -215846972 + L2 LINE L2 1784 2476 -838 382 293 110 12 chr3 2190467 2190631 -215846527 + L2 LINE L2 2866 3045 -227 306 50 0 0 chr3 2190732 2190772 -215846386 + (CA)n Simple_repeat Simple_repeat 1 40 0 417 357 51 13 chr3 2191190 2191347 -215845811 + L2 LINE L2 3104 3266 -6 296 356 10 10 chr3 2191857 2191961 -215845197 + MIR SINE MIR 47 150 -112 336 306 36 0 chr3 2192128 2192239 -215844919 + MIR3 SINE MIR 85 199 -9 223 329 12 12 chr3 2192283 2192365 -215844793 - MIR SINE MIR -122 140 59 1616 164 13 33 chr3 2192625 2192752 -215844406 + L1MB5 LINE L1 5590 5718 -456 3022 100 22 2 chr3 2192752 2193204 -215843954 - L1PA13 LINE L1 0 6163 5703 1616 164 13 33 chr3 2193204 2193617 -215843541 + L1MB5 LINE L1 5718 6174 0 457 310 117 29 chr3 2193994 2194275 -215842883 - L2 LINE L2 0 3313 3008 426 328 23 45 chr3 2194664 2194841 -215842317 + MIR3 SINE MIR 1 173 -35 210 368 51 8 chr3 2195950 2196067 -215841091 + MIR SINE MIR 19 140 -68 1008 182 35 5 chr3 2196190 2196393 -215840765 - MER3 DNA MER1_type 0 209 1 529 301 103 66 chr3 2196457 2196712 -215840446 - L3 LINE CR1 -969 608 337 1672 205 0 7 chr3 2196712 2197010 -215840148 - AluJb SINE Alu -16 296 1 529 301 103 66 chr3 2197010 2197073 -215840085 - L3 LINE CR1 -1240 337 278 338 328 93 40 chr3 2197912 2198159 -215838999 + L1MC4 LINE L1 6769 7028 -1014 3368 89 0 11 chr3 2198325 2198774 -215838384 + MLT2A1 LTR ERVL 1 444 0 40792 82 5 9 chr3 2198774 2204452 -215832706 + HERVL-A1-A1 LTR ERVL 1 5654 0 3372 83 0 7 chr3 2204452 2204899 -215832259 + MLT2A1 LTR ERVL 1 444 0 598 232 21 0 chr3 2204899 2205041 -215832117 + ERVL LTR ERVL 548 692 -5072 22954 41 0 0 chr3 2205042 2208670 -215828488 + L1PA5 LINE L1 2524 6151 -3 2206 219 43 13 chr3 2208672 2209298 -215827860 + L1M4 LINE L1 3961 4605 -1541 1269 257 43 104 chr3 2209324 2209903 -215827255 + MER77 LTR ERV1 58 601 -4 2844 191 42 13 chr3 2209923 2210560 -215826598 - MER63C DNA MER1_type -207 723 68 21 0 0 0 chr3 2211920 2211941 -215825217 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr3 2212063 2212089 -215825069 + AT_rich Low_complexity Low_complexity 1 26 0 879 187 0 0 chr3 2212877 2213016 -215824142 + FRAM SINE Alu 11 149 -27 257 0 30 0 chr3 2213020 2213053 -215824105 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 199 265 0 20 chr3 2213411 2213460 -215823698 - MER5B DNA MER1_type -129 49 2 236 305 93 8 chr3 2213739 2213857 -215823301 + L2 LINE L2 3185 3312 -1 297 213 277 32 chr3 2214983 2215138 -215822020 - MIR3 SINE MIR 0 208 16 * 393 312 153 0 chr3 2215136 2215293 -215821865 + MER5A DNA MER1_type 9 189 0 1642 160 87 3 chr3 2215330 2215617 -215821541 - AluJb SINE Alu -1 311 1 2333 78 20 0 chr3 2216268 2216564 -215820594 + AluY SINE Alu 1 302 -9 308 250 25 12 chr3 2216614 2216694 -215820464 + L2 LINE L2 3233 3313 0 245 314 95 0 chr3 2216743 2216912 -215820246 - L3 LINE CR1 -162 1415 1231 3905 40 0 0 chr3 2217886 2218331 -215818827 - L1PA4 LINE L1 0 6155 5711 3802 9 12 5 chr3 2218331 2218761 -215818397 + L1PA4 LINE L1 5303 5735 -420 193 289 26 53 chr3 2218778 2218854 -215818304 - MIR3 SINE MIR -32 176 103 778 294 23 23 chr3 2219894 2220115 -215817043 - MER58A DNA MER1_type 0 224 4 247 300 65 47 chr3 2220791 2220961 -215816197 - L3 LINE CR1 -59 1518 1346 1552 165 16 41 chr3 2221437 2221630 -215815528 - AluJo SINE Alu -4 308 125 1891 120 49 7 chr3 2221630 2221914 -215815244 + AluSq SINE Alu 1 296 -17 1552 165 16 41 chr3 2221914 2222036 -215815122 - AluJo SINE Alu -187 125 1 340 276 16 0 chr3 2222514 2222637 -215814521 + (TA)n Simple_repeat Simple_repeat 2 126 0 273 269 99 14 chr3 2222637 2222778 -215814380 - L1MC4 LINE L1 -1276 6766 6614 321 311 0 0 chr3 2222784 2222874 -215814284 + L1MC4 LINE L1 6614 6703 -1339 297 0 0 0 chr3 2222875 2222904 -215814254 + (CA)n Simple_repeat Simple_repeat 1 62 0 297 0 0 0 chr3 2222904 2222937 -215814221 + (CA)n Simple_repeat Simple_repeat 2 34 0 1620 117 36 0 chr3 2222952 2223174 -215813984 + MER30 DNA MER1_type 1 230 0 1651 177 0 16 chr3 2223630 2223940 -215813218 - AluJb SINE Alu -7 305 1 369 78 0 0 chr3 2224454 2224505 -215812653 + L1MA8 LINE L1 6216 6266 -25 1676 193 7 16 chr3 2224557 2224863 -215812295 - AluJo SINE Alu -9 303 1 34 24 0 0 chr3 2225165 2225206 -215811952 + AT_rich Low_complexity Low_complexity 1 41 0 302 317 49 28 chr3 2225430 2225572 -215811586 - L2 LINE L2 -196 3076 2932 637 301 59 35 chr3 2225769 2226012 -215811146 - MIR SINE MIR -4 258 3 220 156 0 22 chr3 2226014 2226059 -215811099 - L2 LINE L2 0 3313 3270 492 280 126 6 chr3 2226923 2227098 -215810060 + LTR67 LTR ERVL 353 548 -9 262 282 14 0 chr3 2227264 2227335 -215809823 + MLT1K LTR MaLR 168 239 -349 284 295 78 66 chr3 2227514 2227680 -215809478 - MIR3 SINE MIR -22 186 19 372 301 24 0 chr3 2227744 2227827 -215809331 + L2 LINE L2 3191 3275 -38 22 35 0 0 chr3 2228175 2228204 -215808954 + AT_rich Low_complexity Low_complexity 1 29 0 278 303 34 84 chr3 2229420 2229539 -215807619 - L2 LINE L2 -26 3246 3134 3369 186 13 55 chr3 2229585 2230356 -215806802 - L1M1 LINE L1 -3289 4276 3538 1131 113 38 0 chr3 2230329 2230515 -215806643 - L1 LINE L1 -4338 3227 3035 * 23349 127 21 8 chr3 2230510 2231587 -215805571 - L1M1 LINE L1 -4021 3544 2483 1935 128 0 0 chr3 2231587 2231844 -215805314 - AluSx SINE Alu -11 301 45 23349 127 21 8 chr3 2231844 2234252 -215802906 - L1M1 LINE L1 -5082 2483 13 471 155 0 0 chr3 2234684 2234768 -215802390 + GA-rich Low_complexity Low_complexity 3 86 0 2922 3 0 0 chr3 2234810 2235121 -215802037 + AluYa5 SINE Alu 1 311 0 432 303 70 7 chr3 2235262 2235404 -215801754 - MIR3 SINE MIR -54 154 4 20871 117 16 9 chr3 2235657 2238703 -215798455 - HERV9 LTR ERV1 -5277 3122 55 698 137 68 89 chr3 2238679 2238825 -215798333 - LTR12 LTR ERV1 -130 584 301 * 342 233 11 0 chr3 2238825 2238915 -215798243 - LTR30 LTR ERV1 -79 643 553 355 75 0 0 chr3 2238916 2238969 -215798189 - LTR12 LTR ERV1 -429 285 233 1073 144 43 34 chr3 2239030 2239279 -215797879 - LTR12 LTR ERV1 -456 1982 55 227 239 0 0 chr3 2239279 2239325 -215797833 - LTR30 LTR ERV1 -670 52 7 577 286 94 5 chr3 2240279 2240492 -215796666 + MIR SINE MIR 26 257 -5 1656 202 106 32 chr3 2240868 2241303 -215795855 + MLT1C LTR MaLR 1 467 0 1133 214 27 18 chr3 2241679 2241899 -215795259 + MER58A DNA MER1_type 2 223 -1 748 184 29 7 chr3 2241921 2242057 -215795101 - MER5A DNA MER1_type 0 189 51 1219 209 35 22 chr3 2242176 2242491 -215794667 + L1M4 LINE L1 4687 5005 -1141 24 0 0 0 chr3 2243158 2243182 -215793976 + AT_rich Low_complexity Low_complexity 1 24 0 293 390 45 35 chr3 2243611 2244014 -215793144 - L2 LINE L2 -585 2729 2323 734 234 6 12 chr3 2244085 2244252 -215792906 - MIR SINE MIR -23 239 74 4306 96 12 33 chr3 2244256 2244931 -215792227 - L1PA7 LINE L1 -758 5388 4728 5798 67 3 0 chr3 2244931 2245653 -215791505 + L1PA7 LINE L1 5399 6122 -32 2492 76 0 0 chr3 2245719 2246022 -215791136 + AluY SINE Alu 1 303 -8 779 153 0 58 chr3 2246059 2246196 -215790962 + AluSq/x SINE Alu 1 129 -184 38035 91 8 7 chr3 2246203 2252328 -215784830 + L1PA6 LINE L1 1 6132 -22 333 0 0 0 chr3 2252328 2252365 -215784793 + (CA)n Simple_repeat Simple_repeat 2 38 0 1072 184 0 0 chr3 2252365 2252539 -215784619 + AluJb SINE Alu 131 304 -8 675 301 30 15 chr3 2253123 2253322 -215783836 + MIR3 SINE MIR 4 205 -3 734 290 127 35 chr3 2253457 2253771 -215783387 + MER115 DNA AcHobo 350 692 -1 240 87 43 58 chr3 2254035 2254104 -215783054 + (TTATA)n Simple_repeat Simple_repeat 3 70 0 185 161 179 0 chr3 2254497 2254553 -215782605 - MIR SINE MIR -79 183 118 1527 160 4 30 chr3 2255560 2255829 -215781329 + AluSx SINE Alu 49 310 -2 2122 152 0 0 chr3 2255840 2256150 -215781008 + AluSx SINE Alu 3 312 0 671 274 13 25 chr3 2256332 2256569 -215780589 - AluSx SINE Alu -29 283 50 2160 114 7 3 chr3 2256760 2257058 -215780100 - AluSx SINE Alu -13 299 1 1755 179 3 0 chr3 2259196 2259493 -215777665 + AluJo SINE Alu 1 298 -14 382 279 131 25 chr3 2259546 2259668 -215777490 + L2 LINE L2 3137 3271 -1 1328 130 28 14 chr3 2260077 2260292 -215776866 - L1MC1 LINE L1 0 6333 6116 1060 89 0 7 chr3 2260292 2260427 -215776731 - AluSc SINE Alu -21 288 155 944 123 7 32 chr3 2260431 2260585 -215776573 - L1MC1 LINE L1 -205 6128 5979 871 266 40 4 chr3 2260716 2260942 -215776216 + MIR SINE MIR 2 235 -27 310 167 61 0 chr3 2261051 2261117 -215776041 + MER116 DNA Mariner 1 70 -10 254 178 0 0 chr3 2262754 2262799 -215774359 - MIR SINE MIR -137 125 81 293 301 150 0 chr3 2262829 2262942 -215774216 - L2 LINE L2 -6 3266 3137 673 286 161 23 chr3 2262947 2263289 -215773869 - L2 LINE L2 0 3313 2925 742 304 206 19 chr3 2263502 2263963 -215773195 - L2 LINE L2 -463 2851 2305 252 357 56 0 chr3 2264074 2264200 -215772958 - L2 LINE L2 -215 3057 2925 417 317 72 24 chr3 2264358 2264525 -215772633 + MIR3 SINE MIR 23 197 -11 200 241 17 0 chr3 2264546 2264604 -215772554 + (TA)n Simple_repeat Simple_repeat 2 60 0 780 242 111 75 chr3 2264655 2265015 -215772143 + MER21B LTR ERV1 6 378 -485 741 196 37 0 chr3 2265196 2265359 -215771799 + MER3 DNA MER1_type 1 122 -87 839 240 84 51 chr3 2265387 2265683 -215771475 + MER21B LTR ERV1 408 713 -150 22 0 0 0 chr3 2265695 2265717 -215771441 + AT_rich Low_complexity Low_complexity 1 22 0 605 322 58 37 chr3 2265821 2266062 -215771096 + MIR SINE MIR 18 262 0 858 203 57 10 chr3 2266167 2266359 -215770799 + MER3 DNA MER1_type 1 201 -8 323 289 29 0 chr3 2266722 2266826 -215770332 + MIR SINE MIR 156 262 0 1682 264 64 38 chr3 2268412 2269049 -215768109 + MER76 LTR ERV 1 654 -34 1557 142 59 4 chr3 2269272 2269511 -215767647 - AluJb SINE Alu -58 254 3 3321 214 64 36 chr3 2271105 2272315 -215764843 - L1ME1 LINE L1 -9 6437 5178 3012 166 10 53 chr3 2272315 2272894 -215764264 + MLT2B3 LTR ERVL 1 554 0 3321 214 64 36 chr3 2272894 2273100 -215764058 - L1ME1 LINE L1 -1268 5178 4979 5957 136 35 7 chr3 2273102 2274849 -215762309 - L1MA3 LINE L1 0 7724 5939 * 12479 171 27 10 chr3 2274848 2277124 -215760034 - L1MA3 LINE L1 -3160 4405 1348 1229 167 121 74 chr3 2277124 2277554 -215759604 + LTR7 LTR ERV1 1 450 0 12479 171 27 10 chr3 2277554 2278913 -215758245 - L1MA3 LINE L1 -6217 1348 13 2732 241 65 2 chr3 2278916 2279749 -215757409 - L1ME1 LINE L1 -1443 4983 4099 5047 181 48 50 chr3 2279749 2280994 -215756164 + L1MCa LINE L1 41 1283 -5143 771 224 106 8 chr3 2280993 2281239 -215755919 - L1ME1 LINE L1 -2373 4053 3784 * 297 347 56 0 chr3 2281466 2281610 -215755548 + MIR3 SINE MIR 54 205 -3 1171 237 95 43 chr3 2281815 2282014 -215755144 + L1M4 LINE L1 4333 4520 -1626 2367 97 0 0 chr3 2282014 2282304 -215754854 - AluSx SINE Alu -22 290 1 1171 237 95 43 chr3 2282304 2282724 -215754434 + L1M4 LINE L1 4520 4984 -1162 607 102 51 0 chr3 2282724 2282822 -215754336 - L1PA13 LINE L1 -2 6161 6059 2750 111 15 0 chr3 2282824 2283231 -215753927 + MLT2A2 LTR ERVL 1 413 -40 326 183 42 0 chr3 2283244 2283315 -215753843 - L1ME1 LINE L1 -4358 2068 1995 400 70 0 0 chr3 2283320 2283377 -215753781 + MLT2B1 LTR ERVL 464 520 0 1396 83 10 0 chr3 2283377 2283582 -215753576 - L1PA13 LINE L1 -102 6061 5855 428 281 17 6 chr3 2283593 2283771 -215753387 + L1ME LINE L1 5009 5188 -958 363 202 0 24 chr3 2283804 2283888 -215753270 + L1ME LINE L1 5427 5508 -656 * 29494 100 15 7 chr3 2283886 2289620 -215747538 + L1PA7 LINE L1 648 6453 -16 366 0 56 0 chr3 2289622 2289676 -215747482 + (TA)n Simple_repeat Simple_repeat 1 57 0 40 0 0 0 chr3 2289825 2289865 -215747293 + AT_rich Low_complexity Low_complexity 1 40 0 802 166 18 31 chr3 2290253 2290416 -215746742 + MLT1B LTR MaLR 185 345 -45 22 35 0 0 chr3 2290420 2290449 -215746709 + AT_rich Low_complexity Low_complexity 1 29 0 478 267 47 34 chr3 2291375 2291586 -215745572 - MIR3 SINE MIR -39 223 10 527 294 43 27 chr3 2291818 2292002 -215745156 + MER5A DNA MER1_type 1 187 -2 227 190 17 0 chr3 2292658 2292716 -215744442 + CT-rich Low_complexity Low_complexity 4 62 0 680 273 18 6 chr3 2292793 2292958 -215744200 + MIR3 SINE MIR 33 199 -9 270 0 0 0 chr3 2293550 2293580 -215743578 + (TG)n Simple_repeat Simple_repeat 2 31 0 484 259 0 36 chr3 2293741 2293853 -215743305 - L2 LINE L2 0 3272 3165 276 223 88 34 chr3 2293966 2294114 -215743044 + L1ME4a LINE L1 5965 6120 -1 241 243 121 43 chr3 2294229 2294369 -215742789 + L1ME4a LINE L1 5955 6105 -16 191 309 119 8 chr3 2294933 2295059 -215742099 - MIR SINE MIR -7 201 62 736 295 13 30 chr3 2295367 2295601 -215741557 + MIR SINE MIR 14 243 -19 410 325 7 13 chr3 2295915 2296069 -215741089 + MIR SINE MIR 1 153 -109 266 202 95 24 chr3 2297053 2297137 -215740021 + MLT1K LTR MaLR 492 581 -7 265 321 46 9 chr3 2298251 2298360 -215738798 + MIR SINE MIR 148 260 -2 2316 110 0 3 chr3 2298381 2298691 -215738467 - AluSc SINE Alu 0 309 1 330 302 86 7 chr3 2298763 2298902 -215738256 - MIR SINE MIR -111 151 2 840 217 33 5 chr3 2299019 2299203 -215737955 - MER5A DNA MER1_type 0 189 1 494 261 106 6 chr3 2299355 2299535 -215737623 - L2 LINE L2 -2 3311 3114 407 269 156 19 chr3 2300050 2300262 -215736896 - L2 LINE L2 -228 3044 2804 234 345 84 28 chr3 2301000 2301142 -215736016 - MIR SINE MIR -107 155 6 548 322 70 35 chr3 2301547 2301746 -215735412 + MIR SINE MIR 56 261 -1 1909 167 10 6 chr3 2301854 2302165 -215734993 + AluJo SINE Alu 1 312 0 2644 219 95 37 chr3 2302259 2303014 -215734144 - MER21B LTR ERV1 -52 811 13 356 362 8 8 chr3 2303361 2303488 -215733670 + MIR3 SINE MIR 76 202 -6 305 254 175 26 chr3 2306256 2306370 -215730788 + MIR3 SINE MIR 38 168 -40 26 30 0 0 chr3 2306370 2306403 -215730755 + AT_rich Low_complexity Low_complexity 1 33 0 208 383 0 54 chr3 2306806 2306973 -215730185 - L2 LINE L2 -218 3054 2897 886 316 149 25 chr3 2307090 2307613 -215729545 - L2 LINE L2 -573 2741 2154 1196 215 34 4 chr3 2308076 2308309 -215728849 - AluJb SINE Alu -23 289 50 658 182 0 0 chr3 2308595 2308705 -215728453 + FLAM_A SINE Alu 1 110 -32 195 42 0 0 chr3 2308712 2308736 -215728422 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2814 181 37 15 chr3 2308736 2309915 -215727243 - L1MC1 LINE L1 -12 6321 4992 13436 84 11 1 chr3 2309919 2312527 -215724631 - L1PA7 LINE L1 -16 6138 3509 269 317 99 5 chr3 2312656 2312858 -215724300 + L1ME LINE L1 5612 5832 -289 31 82 0 0 chr3 2312919 2312992 -215724166 + AT_rich Low_complexity Low_complexity 1 73 0 338 357 61 5 chr3 2313511 2313713 -215723445 + MIR SINE MIR 20 232 -30 1469 213 68 24 chr3 2313776 2314157 -215723001 - LTR9 LTR ERV1 0 612 215 24856 111 20 18 chr3 2314187 2318514 -215718644 - L1P LINE L1 -1784 4362 11 2282 112 7 0 chr3 2318516 2318821 -215718337 - AluSg SINE Alu -3 307 1 264 368 18 18 chr3 2319962 2320076 -215717082 + MIR SINE MIR 34 147 -115 10438 139 46 38 chr3 2321393 2322022 -215715136 + Tigger1 DNA MER2_type 10 632 -1786 1638 149 30 11 chr3 2322022 2322291 -215714867 + AluSx SINE Alu 1 274 -38 10438 139 46 38 chr3 2322291 2323756 -215713402 + Tigger1 DNA MER2_type 632 2122 -296 772 133 67 0 chr3 2323766 2323901 -215713257 - Tigger1 DNA MER2_type -1334 1084 941 * 1459 156 44 10 chr3 2323886 2324181 -215712977 + Tigger1 DNA MER2_type 2114 2418 0 279 79 0 0 chr3 2324463 2324501 -215712657 + (CA)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr3 2324554 2324575 -215712583 + AT_rich Low_complexity Low_complexity 1 21 0 40643 35 22 1 chr3 2325370 2331410 -215705748 + L1PA2 LINE L1 1 6167 0 23 33 0 0 chr3 2331863 2331893 -215705265 + AT_rich Low_complexity Low_complexity 1 30 0 343 284 74 14 chr3 2332490 2332638 -215704520 - Charlie8 DNA MER1_type -2256 161 5 1001 156 25 0 chr3 2332714 2332874 -215704284 + AluSg/x SINE Alu 135 298 -12 957 195 91 0 chr3 2332963 2333184 -215703974 + MLT1D LTR MaLR 264 504 -1 1144 242 104 41 chr3 2334559 2335047 -215702111 - MLT1K LTR MaLR -58 530 12 237 366 60 25 chr3 2335603 2335838 -215701320 + L2 LINE L2 2809 3051 -221 2237 106 3 13 chr3 2336973 2337284 -215699874 + AluSx SINE Alu 1 308 -4 15777 32 3 0 chr3 2337706 2339690 -215697468 - L1PA8 LINE L1 -848 5298 3309 5739 97 0 34 chr3 2339690 2340568 -215696590 + L1PA8 LINE L1 5322 6172 0 195 42 0 0 chr3 2340615 2340639 -215696519 + (T)n Simple_repeat Simple_repeat 1 24 0 253 376 86 4 chr3 2340722 2340913 -215696245 - MIR3 SINE MIR -58 150 2 186 43 0 0 chr3 2340998 2341021 -215696137 + (TG)n Simple_repeat Simple_repeat 2 24 0 1089 41 75 0 chr3 2341299 2341446 -215695712 - L1PA4 LINE L1 -6 6149 5992 407 325 20 24 chr3 2342082 2342267 -215694891 - MIR SINE MIR -27 235 52 205 204 23 0 chr3 2342459 2342503 -215694655 + CT-rich Low_complexity Low_complexity 5 49 0 274 44 22 22 chr3 2342503 2342548 -215694610 + (TC)n Simple_repeat Simple_repeat 2 46 0 183 80 0 0 chr3 2342548 2342573 -215694585 + (CA)n Simple_repeat Simple_repeat 1 25 0 269 339 110 9 chr3 2343423 2343532 -215693626 + MIR3 SINE MIR 86 205 -3 495 0 0 0 chr3 2343588 2343643 -215693515 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 1512 159 12 12 chr3 2343660 2343911 -215693247 - AluJo SINE Alu -49 263 13 806 313 57 32 chr3 2344339 2344745 -215692413 - LTR16A LTR ERVL -34 416 1 333 159 95 0 chr3 2344850 2344913 -215692245 + L1MB7 LINE L1 5552 5620 -554 1497 183 59 7 chr3 2344913 2345186 -215691972 + AluJo SINE Alu 1 287 -25 306 206 0 16 chr3 2345191 2345254 -215691904 - L1MCa LINE L1 -4359 2067 2006 2020 213 59 6 chr3 2345257 2345796 -215691362 + L1MB7 LINE L1 5603 6170 -14 232 206 38 0 chr3 2345804 2345935 -215691223 + G-rich Low_complexity Low_complexity 3 138 0 15777 32 3 0 chr3 2346101 2348085 -215689073 - L1PA2 LINE L1 -848 5298 3309 6986 30 0 0 chr3 2348085 2348928 -215688230 + L1PA2 LINE L1 5322 6167 0 23 33 0 0 chr3 2349381 2349411 -215687747 + AT_rich Low_complexity Low_complexity 1 30 0 343 284 74 14 chr3 2350008 2350156 -215687002 - Charlie8 DNA MER1_type -2256 161 5 1001 156 25 0 chr3 2350232 2350392 -215686766 + AluSg/x SINE Alu 137 300 -12 957 195 91 0 chr3 2350481 2350702 -215686456 + MLT1D LTR MaLR 264 504 -1 1144 242 104 41 chr3 2352077 2352565 -215684593 - MLT1K LTR MaLR -58 530 12 237 366 60 25 chr3 2353121 2353356 -215683802 + L2 LINE L2 2809 3051 -221 2229 107 3 13 chr3 2354491 2354801 -215682357 + AluSx SINE Alu 1 307 -5 15777 32 3 0 chr3 2355223 2357207 -215679951 - L1PA8 LINE L1 -848 5298 3309 5758 95 0 34 chr3 2357207 2358085 -215679073 + L1PA8 LINE L1 5322 6172 0 195 42 0 0 chr3 2358132 2358156 -215679002 + (T)n Simple_repeat Simple_repeat 1 24 0 253 376 86 4 chr3 2358239 2358430 -215678728 - MIR3 SINE MIR -58 150 2 186 43 0 0 chr3 2358515 2358538 -215678620 + (TG)n Simple_repeat Simple_repeat 2 24 0 1089 41 75 0 chr3 2358816 2358963 -215678195 - L1PA4 LINE L1 -6 6149 5992 407 325 20 24 chr3 2359599 2359784 -215677374 - MIR SINE MIR -27 235 52 205 204 23 0 chr3 2359976 2360020 -215677138 + CT-rich Low_complexity Low_complexity 5 49 0 274 44 22 22 chr3 2360020 2360065 -215677093 + (TC)n Simple_repeat Simple_repeat 2 46 0 183 80 0 0 chr3 2360065 2360090 -215677068 + (CA)n Simple_repeat Simple_repeat 1 25 0 269 339 110 9 chr3 2360940 2361049 -215676109 + MIR3 SINE MIR 86 205 -3 423 0 0 0 chr3 2361105 2361152 -215676006 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 1512 159 12 12 chr3 2361169 2361420 -215675738 - AluJo SINE Alu -49 263 13 806 313 57 32 chr3 2361848 2362254 -215674904 - LTR16A LTR ERVL -34 416 1 333 159 95 0 chr3 2362359 2362422 -215674736 + L1MB7 LINE L1 5552 5620 -554 1497 183 59 7 chr3 2362422 2362695 -215674463 + AluJo SINE Alu 1 287 -25 396 155 0 0 chr3 2362695 2362766 -215674392 + (TA)n Simple_repeat Simple_repeat 1 71 0 2017 213 59 6 chr3 2362766 2363305 -215673853 + L1MB7 LINE L1 5603 6170 -14 622 176 16 0 chr3 2363313 2363624 -215673534 + G-rich Low_complexity Low_complexity 1 316 0 180 0 0 0 chr3 2363889 2363909 -215673249 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 315 320 120 0 chr3 2364150 2364300 -215672858 - MIR SINE MIR -14 248 81 277 332 91 15 chr3 2364611 2364810 -215672348 - LTR16A LTR ERVL -5 445 232 643 291 76 64 chr3 2365137 2365559 -215671599 - MLT1L LTR MaLR -188 427 1 188 263 35 35 chr3 2366789 2366846 -215670312 - L3 LINE CR1 -5 1572 1516 214 299 15 15 chr3 2366929 2366996 -215670162 - MER5B DNA MER1_type -111 67 1 21 36 0 0 chr3 2367121 2367149 -215670009 + AT_rich Low_complexity Low_complexity 1 28 0 206 139 28 0 chr3 2367680 2367716 -215669442 + (CAT)n Simple_repeat Simple_repeat 2 38 0 527 215 38 51 chr3 2368743 2368901 -215668257 + MER5C DNA MER1_type 169 324 0 359 283 72 17 chr3 2369141 2369321 -215667837 + L1MC4a LINE L1 5710 5899 -1909 781 120 66 24 chr3 2369835 2370002 -215667156 + L1MA8 LINE L1 6113 6286 -5 192 366 98 60 chr3 2370107 2370364 -215666794 - L2 LINE L2 -5 3267 2992 1624 173 125 48 chr3 2370364 2370595 -215666563 - MLT1C LTR MaLR -1 466 254 360 0 0 0 chr3 2370595 2370635 -215666523 + (TG)n Simple_repeat Simple_repeat 2 41 0 1624 173 125 48 chr3 2370635 2370836 -215666322 - MLT1C LTR MaLR -213 254 1 192 366 98 60 chr3 2370836 2370925 -215666233 - L2 LINE L2 -280 2992 2908 251 351 9 27 chr3 2370979 2371090 -215666068 - L2 LINE L2 -613 2701 2593 465 252 84 15 chr3 2371182 2371313 -215665845 - MIR SINE MIR -62 200 61 2001 186 14 3 chr3 2373471 2373832 -215663326 - MLT1A1 LTR MaLR 0 365 1 1662 191 13 3 chr3 2373895 2374199 -215662959 + AluJb SINE Alu 1 307 -5 327 49 0 0 chr3 2374203 2374244 -215662914 + (GGA)n Simple_repeat Simple_repeat 3 43 0 336 259 126 21 chr3 2375098 2375241 -215661917 + L1ME4a LINE L1 5962 6119 -2 21 36 0 0 chr3 2375642 2375670 -215661488 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr3 2375967 2376001 -215661157 + AT_rich Low_complexity Low_complexity 1 34 0 929 172 84 0 chr3 2376685 2376888 -215660270 + Charlie1 DNA MER1_type 6 225 -2536 510 200 16 8 chr3 2376896 2377021 -215660137 + Charlie1 DNA MER1_type 2632 2757 -4 1795 203 120 0 chr3 2377091 2377509 -215659649 - MER119 DNA MER1_type -110 473 6 1802 111 0 24 chr3 2378317 2378570 -215658588 + AluSg SINE Alu 48 294 -16 297 262 171 37 chr3 2379075 2379239 -215657919 - MIR SINE MIR -70 192 7 190 253 191 43 chr3 2379324 2379486 -215657672 - L3b LINE CR1 -110 1473 1288 214 291 36 0 chr3 2379536 2379591 -215657567 + L2 LINE L2 3251 3307 -6 274 270 54 0 chr3 2380545 2380619 -215656539 - MER63 DNA MER1_type -5 1056 979 266 214 0 0 chr3 2380621 2380677 -215656481 - MER63 DNA MER1_type -311 750 695 334 303 40 59 chr3 2380724 2380876 -215656282 + MIR SINE MIR 104 252 -10 202 268 0 62 chr3 2381115 2381212 -215655946 + CT-rich Low_complexity Low_complexity 2 92 0 389 341 28 22 chr3 2383748 2383927 -215653231 + MIR SINE MIR 47 226 -36 453 216 20 0 chr3 2383941 2384043 -215653115 - MER3 DNA MER1_type -25 184 81 1273 181 3 100 chr3 2384044 2384364 -215652794 + AluJb SINE Alu 12 300 -12 2573 79 31 8 chr3 2386135 2386491 -215650667 - THE1B LTR MaLR 0 364 1 1250 212 24 44 chr3 2387165 2387462 -215649696 - AluJo SINE Alu -21 291 1 280 189 42 95 chr3 2389229 2389280 -215647878 + MIR SINE MIR 173 218 -44 1985 161 0 3 chr3 2389280 2389584 -215647574 + AluSx SINE Alu 1 303 -9 280 189 42 95 chr3 2389584 2389627 -215647531 + MIR SINE MIR 218 262 0 198 370 0 14 chr3 2389627 2389700 -215647458 - MIR SINE MIR -174 88 17 2304 157 0 42 chr3 2389742 2390176 -215646982 + MSTA LTR MaLR 1 416 -12 24 0 0 0 chr3 2390764 2390788 -215646370 + AT_rich Low_complexity Low_complexity 1 24 0 332 357 134 34 chr3 2390959 2391853 -215645305 - L2 LINE L2 -338 2976 1958 3598 117 43 23 chr3 2391853 2392451 -215644707 - MER4B LTR ERV1 0 610 1 332 357 134 34 chr3 2392451 2392613 -215644545 - L2 LINE L2 -1356 1958 1814 27 29 0 0 chr3 2393240 2393274 -215643884 + GC_rich Low_complexity Low_complexity 1 34 0 24 53 0 0 chr3 2393283 2393321 -215643837 + GC_rich Low_complexity Low_complexity 1 38 0 2377 55 7 0 chr3 2393902 2394194 -215642964 - AluSp SINE Alu -19 294 1 271 258 15 0 chr3 2394311 2394377 -215642781 + MIR SINE MIR 87 153 -109 4412 109 24 46 chr3 2394499 2394850 -215642308 - MER4E LTR ERV1 0 766 409 2142 118 7 0 chr3 2394850 2395139 -215642019 - AluSx SINE Alu -21 291 1 4412 109 24 46 chr3 2395139 2395570 -215641588 - MER4E LTR ERV1 -357 409 1 362 252 63 9 chr3 2395752 2395863 -215641295 - L2 LINE L2 0 3313 3197 28 0 0 0 chr3 2396029 2396057 -215641101 + AT_rich Low_complexity Low_complexity 1 28 0 1428 155 78 42 chr3 2397509 2397793 -215639365 + AluJo SINE Alu 1 294 -18 183 382 0 0 chr3 2397995 2398050 -215639108 - MIR SINE MIR -204 58 4 229 314 117 22 chr3 2398276 2398413 -215638745 - MIR SINE MIR -58 204 55 2704 125 82 31 chr3 2398579 2399164 -215637994 - MER4B LTR ERV1 0 779 1 654 254 82 44 chr3 2399215 2399534 -215637624 - MLT1K LTR MaLR 0 588 258 1617 165 43 25 chr3 2399622 2399949 -215637209 - MER7A DNA MER2_type -14 332 2 892 175 56 12 chr3 2402317 2402477 -215634681 + AluJb SINE Alu 134 300 -12 1136 230 143 31 chr3 2403617 2404065 -215633093 + MLT1J LTR MaLR 1 498 -13 372 121 0 0 chr3 2404717 2404775 -215632383 + L1MB8 LINE L1 6113 6170 -8 22 70 0 0 chr3 2405473 2405516 -215631642 + AT_rich Low_complexity Low_complexity 1 43 0 2266 132 0 0 chr3 2405521 2405825 -215631333 + AluSx SINE Alu 1 304 -8 9834 53 11 0 chr3 2405829 2407079 -215630079 + HSMAR1 DNA Mariner 24 1287 0 785 161 0 0 chr3 2407157 2407281 -215629877 + FLAM_C SINE Alu 1 124 -9 361 252 33 16 chr3 2407477 2407624 -215629534 + MIR SINE MIR 70 260 -2 372 284 20 0 chr3 2407750 2407852 -215629306 + Zaphod DNA AcHobo 12 115 -3916 1879 198 46 12 chr3 2407883 2408364 -215628794 + L1MC3 LINE L1 3657 4153 -1993 4414 168 66 16 chr3 2408365 2408382 -215628776 + L1MC3 LINE L1 5273 5288 -2497 1997 152 7 0 chr3 2408382 2408679 -215628479 + AluSx SINE Alu 1 299 -13 4414 168 66 16 chr3 2408679 2409008 -215628150 + L1MC3 LINE L1 5288 5599 -2186 1695 174 142 12 chr3 2409008 2409416 -215627742 - LOR1b LTR ERV1 0 461 1 4414 168 66 16 chr3 2409416 2410113 -215627045 + L1MC3 LINE L1 5599 6369 -1416 480 170 76 82 chr3 2410113 2410284 -215626874 - LTR48 LTR ERV1 -4 783 614 1479 187 132 46 chr3 2410313 2410752 -215626406 - LTR48 LTR ERV1 -310 477 1 5899 140 39 94 chr3 2410768 2412228 -215624930 + L1MC3 LINE L1 6380 7759 -26 896 174 6 45 chr3 2412262 2412440 -215624718 + FRAM SINE Alu 1 171 -5 782 192 53 70 chr3 2412440 2412635 -215624523 + L1M3 LINE L1 5481 5686 -485 259 149 0 21 chr3 2412635 2412682 -215624476 + Alu SINE Alu 245 290 -12 782 192 53 70 chr3 2412682 2412812 -215624346 + L1M3 LINE L1 5686 5817 -354 * 1932 171 49 63 chr3 2412805 2413313 -215623845 + L1MB7 LINE L1 5676 6176 -8 243 227 0 0 chr3 2413313 2413379 -215623779 + GA-rich Low_complexity Low_complexity 5 70 0 842 256 96 14 chr3 2413415 2413696 -215623462 + Zaphod DNA AcHobo 154 457 -3574 234 197 212 0 chr3 2413714 2413780 -215623378 + Zaphod DNA AcHobo 584 663 -3368 * 971 191 221 13 chr3 2413779 2414076 -215623082 + Zaphod DNA AcHobo 3282 3640 -391 927 197 25 142 chr3 2414076 2414603 -215622555 - MER4C LTR ERV1 0 465 1 2257 146 28 8 chr3 2414612 2414969 -215622189 - THE1B LTR MaLR 0 364 1 386 301 7 0 chr3 2415018 2415154 -215622004 - MER4C-int LTR ERV1 -79 6519 6383 262 237 30 69 chr3 2415151 2415282 -215621876 - MER4C-int LTR ERV1 -175 6423 6298 * 329 185 0 25 chr3 2415282 2415363 -215621795 + (TATG)n Simple_repeat Simple_repeat 4 82 0 207 0 0 0 chr3 2415365 2415388 -215621770 + (CA)n Simple_repeat Simple_repeat 2 24 0 8705 136 52 22 chr3 2415390 2415639 -215621519 - MER4C-int LTR ERV1 -491 5840 5600 1720 134 0 0 chr3 2415639 2415878 -215621280 - AluSx SINE Alu -73 239 1 8705 136 52 22 chr3 2415878 2416279 -215620879 - MER4C-int LTR ERV1 -731 5600 5212 1875 174 0 10 chr3 2416279 2416577 -215620581 - AluSx SINE Alu -17 295 1 8705 136 52 22 chr3 2416577 2417691 -215619467 - MER4C-int LTR ERV1 -1118 5213 4022 1420 214 3 26 chr3 2417704 2418007 -215619151 + AluJb SINE Alu 15 310 -2 25 0 0 0 chr3 2418009 2418034 -215619124 + AT_rich Low_complexity Low_complexity 1 25 0 358 169 0 0 chr3 2418034 2418105 -215619053 - MER4C-int LTR ERV1 -3623 4497 4427 2114 127 74 3 chr3 2418105 2418444 -215618714 - THE1B LTR MaLR -1 363 1 11391 91 7 29 chr3 2418444 2420059 -215617099 - THE1B-int LTR MaLR 0 1580 1 2401 127 31 6 chr3 2420059 2420414 -215616744 - THE1B LTR MaLR 0 364 1 3491 181 72 97 chr3 2420414 2421302 -215615856 - MER4C-int LTR ERV1 -1444 3437 2402 2115 123 0 13 chr3 2421302 2421610 -215615548 + AluSx SINE Alu 1 304 -8 3491 181 72 97 chr3 2421610 2422148 -215615010 - MER4C-int LTR ERV1 -2479 2402 1852 266 232 245 60 chr3 2422148 2422381 -215614777 - MER34C LTR ERV1 -155 430 155 251 205 301 12 chr3 2422381 2422464 -215614694 - MER4C-int LTR ERV1 -4135 988 882 2406 164 55 17 chr3 2422467 2423173 -215613985 + LTR1B LTR ERV1 1 785 0 943 184 0 153 chr3 2423175 2423463 -215613695 - MER4C-int LTR ERV1 -4149 3388 3145 1384 189 97 70 chr3 2423545 2423603 -215613555 - MER4C-int LTR ERV1 -4568 1763 1708 1496 223 7 3 chr3 2423603 2423895 -215613263 + AluJo SINE Alu 1 293 -19 1384 189 97 70 chr3 2423895 2424239 -215612919 - MER4C-int LTR ERV1 -4623 1708 1350 589 146 131 106 chr3 2424329 2424444 -215612714 - MER4C-int LTR ERV1 -4933 1398 1287 383 250 0 0 chr3 2424444 2424516 -215612642 - tRNA-Glu-GAG tRNA tRNA -1 74 3 589 146 131 106 chr3 2424516 2424711 -215612447 - MER4C-int LTR ERV1 -5044 1287 994 817 239 73 19 chr3 2425168 2425420 -215611738 - MER4C-int LTR ERV1 -6162 436 81 2095 116 0 55 chr3 2425420 2425748 -215611410 + AluSg SINE Alu 1 310 0 817 239 73 19 chr3 2425748 2425834 -215611324 - MER4C-int LTR ERV1 -6517 81 1 1216 200 37 134 chr3 2425837 2426352 -215610806 - MER4C LTR ERV1 0 465 1 1140 231 28 3 chr3 2426352 2426634 -215610524 + Zaphod DNA AcHobo 3637 3925 -106 375 141 0 0 chr3 2426944 2427008 -215610150 + (TCCC)n Simple_repeat Simple_repeat 1 64 0 749 189 6 89 chr3 2427859 2428039 -215609119 + FRAM SINE Alu 1 164 -12 262 305 0 12 chr3 2428622 2428704 -215608454 + L2 LINE L2 3134 3214 -58 849 278 85 39 chr3 2429049 2429459 -215607699 - LTR16A LTR ERVL -5 445 17 195 268 18 0 chr3 2429480 2429536 -215607622 - MER5A DNA MER1_type -6 183 127 1992 143 0 3 chr3 2429536 2429823 -215607335 + AluJb SINE Alu 1 286 -26 276 158 0 0 chr3 2429823 2429880 -215607278 + (CA)n Simple_repeat Simple_repeat 1 57 0 795 193 0 0 chr3 2429880 2430015 -215607143 - MER5A DNA MER1_type -53 136 2 576 331 48 51 chr3 2430142 2430577 -215606581 - L2 LINE L2 -504 2810 2377 242 208 57 19 chr3 2431897 2431950 -215605208 - MIR SINE MIR -5 257 203 2098 135 0 0 chr3 2431998 2432286 -215604872 + AluSx SINE Alu 1 288 -24 185 233 0 23 chr3 2432672 2432715 -215604443 - MIR SINE MIR -62 146 105 180 402 51 8 chr3 2432742 2432859 -215604299 + MER5A DNA MER1_type 49 170 -19 515 266 62 35 chr3 2433461 2433687 -215603471 + L1ME LINE L1 5547 5778 -343 1539 92 0 0 chr3 2433818 2434024 -215603134 + L1PA8A LINE L1 10 215 -5660 * 27904 129 12 13 chr3 2434021 2438330 -215598828 + L1PA8A LINE L1 1022 5362 -1084 2021 113 0 34 chr3 2438330 2438642 -215598516 + AluSp SINE Alu 1 302 0 27904 129 12 13 chr3 2438642 2439725 -215597433 + L1PA8A LINE L1 5362 6445 -1 1919 108 0 73 chr3 2439745 2440061 -215597097 - AluSg SINE Alu -9 301 9 288 137 0 0 chr3 2440065 2440116 -215597042 + (TG)n Simple_repeat Simple_repeat 2 52 0 23 0 0 0 chr3 2440898 2440921 -215596237 + AT_rich Low_complexity Low_complexity 1 23 0 625 217 0 0 chr3 2441662 2441777 -215595381 - MIR SINE MIR -136 126 12 249 284 108 68 chr3 2441936 2442112 -215595046 + MIR SINE MIR 56 238 -24 180 0 0 0 chr3 2442467 2442487 -215594671 + (A)n Simple_repeat Simple_repeat 1 20 0 305 311 48 0 chr3 2442581 2442684 -215594474 - L3b LINE CR1 -199 1384 1277 588 219 9 0 chr3 2442731 2442845 -215594313 - Charlie1 DNA MER1_type -1 2760 2646 657 212 8 8 chr3 2442852 2442970 -215594188 + FLAM_C SINE Alu 3 120 -23 2486 48 0 3 chr3 2442996 2443285 -215593873 - AluY SINE Alu -23 288 1 880 221 103 0 chr3 2443294 2443498 -215593660 - Charlie1 DNA MER1_type -2536 225 1 1641 179 43 13 chr3 2443586 2443888 -215593270 - AluJo SINE Alu -1 311 1 507 236 182 32 chr3 2444564 2444784 -215592374 - MIR SINE MIR -8 254 2 1732 173 0 23 chr3 2444802 2445108 -215592050 + AluJb SINE Alu 2 300 -12 537 273 23 102 chr3 2446357 2446661 -215590497 + Charlie8 DNA MER1_type 9 288 -2129 2188 95 3 0 chr3 2447307 2447641 -215589517 - AluSq SINE Alu 0 335 1 230 143 71 0 chr3 2448438 2448480 -215588678 + Tigger6b DNA MER2_type 818 862 -735 1836 144 0 47 chr3 2449029 2449232 -215587926 - AluJo SINE Alu -24 288 102 2372 103 71 8 chr3 2449232 2449583 -215587575 - THE1C LTR MaLR -2 373 1 1836 144 0 47 chr3 2449583 2449677 -215587481 - AluJo SINE Alu -210 102 5 2009 147 6 22 chr3 2450060 2450372 -215586786 - AluSx SINE Alu -5 307 1 342 279 55 24 chr3 2451463 2451628 -215585530 - MIR3 SINE MIR -24 184 15 720 209 144 56 chr3 2452186 2452375 -215584783 + L1ME4a LINE L1 5667 5838 -283 1617 198 27 3 chr3 2452375 2452668 -215584490 + AluJo SINE Alu 1 300 -12 720 209 144 56 chr3 2452668 2452798 -215584360 + L1ME4a LINE L1 5838 6014 -107 33862 35 2 2 chr3 2453099 2457139 -215580019 - L1P LINE L1 -1633 4513 472 7124 36 0 0 chr3 2457134 2458386 -215578772 + L1P1 LINE L1 4554 5805 -350 * 23 0 0 0 chr3 2458783 2458806 -215578352 + AT_rich Low_complexity Low_complexity 1 23 0 781 253 21 11 chr3 2459383 2459569 -215577589 - MER5A DNA MER1_type 0 189 2 609 276 134 32 chr3 2459637 2459981 -215577177 - L2 LINE L2 -1 3312 2934 934 259 59 8 chr3 2461409 2461645 -215575513 - MIR SINE MIR 0 262 15 2070 122 25 0 chr3 2461762 2462048 -215575110 + AluSx SINE Alu 1 293 -19 21 95 0 0 chr3 2462103 2462166 -215574992 + AT_rich Low_complexity Low_complexity 1 63 0 786 274 34 1 chr3 2462299 2462518 -215574640 - MIR SINE MIR -6 256 30 859 219 72 0 chr3 2462806 2463085 -215574073 + L1MEc LINE L1 2020 2318 -4078 479 256 0 0 chr3 2463064 2463185 -215573973 + L1MEc LINE L1 3433 3553 -2662 * 525 217 19 9 chr3 2463188 2463294 -215573864 + AluJo SINE Alu 116 222 -90 2806 224 54 15 chr3 2463320 2464101 -215573057 + L1MEc LINE L1 3584 4394 -1821 1611 157 102 4 chr3 2464616 2464890 -215572268 + AluJo SINE Alu 1 301 -11 782 199 34 28 chr3 2465071 2465247 -215571911 + MER5B DNA MER1_type 2 178 0 211 333 121 0 chr3 2466190 2466355 -215570803 + L2 LINE L2 2864 3048 -224 1912 149 0 17 chr3 2466536 2466831 -215570327 - AluJo SINE Alu -22 290 1 711 153 0 8 chr3 2466933 2467051 -215570107 - L1ME1 LINE L1 -5 6161 6045 319 194 124 5 chr3 2467088 2467231 -215569927 - MIR SINE MIR -27 235 13 2298 154 3 16 chr3 2467783 2468154 -215569004 - MER47A DNA MER2_type 0 366 1 1317 219 108 23 chr3 2468913 2469302 -215567856 + MLT1C LTR MaLR 1 422 -45 1826 102 31 0 chr3 2469341 2469596 -215567562 + AluSc SINE Alu 42 304 -5 230 132 26 0 chr3 2469605 2469643 -215567515 + MLT1B LTR MaLR 352 390 0 2871 139 7 16 chr3 2469885 2470325 -215566833 + L1PA15 LINE L1 5728 6163 -2 2378 84 7 0 chr3 2470916 2471225 -215565933 + L1PB1 LINE L1 5841 6151 0 606 230 57 63 chr3 2471341 2471493 -215565665 + L1MC5 LINE L1 7027 7178 -801 1826 153 0 14 chr3 2471493 2471780 -215565378 + AluJb SINE Alu 1 283 -29 183 42 0 0 chr3 2471783 2471807 -215565351 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 606 230 57 63 chr3 2471807 2471877 -215565281 + L1MC5 LINE L1 7180 7251 -728 285 98 0 0 chr3 2472046 2472087 -215565071 + (CA)n Simple_repeat Simple_repeat 2 42 0 425 217 43 122 chr3 2472096 2472237 -215564921 + L1MC5 LINE L1 7310 7460 -501 4795 68 0 3 chr3 2472237 2472815 -215564343 + L1PA7 LINE L1 5579 6154 0 425 217 43 122 chr3 2472815 2472827 -215564331 + L1MC5 LINE L1 7460 7471 -490 2212 129 0 0 chr3 2472827 2473138 -215564020 + AluSx SINE Alu 1 311 -1 425 217 43 122 chr3 2473138 2473213 -215563945 + L1MC5 LINE L1 7471 7521 -440 1520 213 216 17 chr3 2473241 2473649 -215563509 + LTR40a LTR ERVL 31 519 0 336 254 71 61 chr3 2473687 2473982 -215563176 - L1MCa LINE L1 -4387 1995 1698 * 11622 209 48 23 chr3 2473978 2474604 -215562554 - L1MD1 LINE L1 -1 6635 6027 2175 125 0 0 chr3 2474604 2474916 -215562242 - AluSx SINE Alu 0 312 1 11622 209 48 23 chr3 2474916 2480327 -215556831 - L1MD1 LINE L1 -609 6027 202 1440 171 0 0 chr3 2480332 2480549 -215556609 - AluJb SINE Alu -30 282 66 603 259 63 0 chr3 2480555 2480698 -215556460 - L1MD1 LINE L1 -6358 182 31 1680 235 66 84 chr3 2480727 2481197 -215555961 - L1MCa LINE L1 -4727 1657 1180 1718 183 3 25 chr3 2481197 2481514 -215555644 - AluJb SINE Alu -2 310 1 1680 235 66 84 chr3 2481514 2481548 -215555610 - L1MCa LINE L1 -5204 1180 1147 1851 183 3 3 chr3 2481548 2481859 -215555299 - AluJb SINE Alu -1 311 1 1680 235 66 84 chr3 2481859 2482262 -215554896 - L1MCa LINE L1 -5237 1147 765 227 64 0 43 chr3 2482340 2482387 -215554771 + LTR66 LTR ERVL 394 438 -172 180 77 0 0 chr3 2482388 2482414 -215554744 + (GA)n Simple_repeat Simple_repeat 2 27 0 249 33 0 0 chr3 2482463 2482493 -215554665 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1685 191 3 3 chr3 2483065 2483364 -215553794 - AluJo SINE Alu -13 299 1 198 0 0 0 chr3 2483365 2483387 -215553771 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 22 0 0 0 chr3 2483387 2483409 -215553749 + AT_rich Low_complexity Low_complexity 1 22 0 475 188 11 152 chr3 2483690 2483903 -215553255 + L1MC5 LINE L1 7545 7712 -249 1715 168 45 3 chr3 2483903 2484189 -215552969 - AluJb SINE Alu -14 298 1 475 188 11 152 chr3 2484189 2484252 -215552906 + L1MC5 LINE L1 7712 7782 -179 829 223 13 12 chr3 2484295 2484597 -215552561 + MLT2F LTR ERVL 8 376 -287 560 273 0 27 chr3 2484774 2484924 -215552234 - MIR SINE MIR -64 198 53 421 217 22 0 chr3 2485726 2485818 -215551340 + MER94 DNA DNA 10 103 -31 483 282 25 0 chr3 2485830 2485971 -215551187 - MIR SINE MIR -62 146 2 872 269 49 4 chr3 2487622 2487867 -215549291 - MIR SINE MIR -4 258 3 266 304 128 20 chr3 2487950 2488052 -215549106 + L2 LINE L2 3155 3267 -5 24 0 0 0 chr3 2488360 2488384 -215548774 + AT_rich Low_complexity Low_complexity 1 24 0 1895 143 61 3 chr3 2489477 2489770 -215547388 - AluSg SINE Alu 0 310 1 375 282 172 6 chr3 2490360 2490534 -215546624 - MIR SINE MIR -12 250 48 5246 56 0 0 chr3 2490549 2491156 -215546002 - L1PA6 LINE L1 -3 6151 5545 238 339 85 23 chr3 2491308 2491438 -215545720 - MIR3 SINE MIR -69 139 2 200 303 100 74 chr3 2492017 2492288 -215544870 + L2 LINE L2 2985 3262 -10 496 290 129 28 chr3 2492292 2492540 -215544618 + L3 LINE CR1 605 877 -700 236 315 65 0 chr3 2492598 2492706 -215544452 + L3 LINE CR1 842 956 -621 552 283 46 32 chr3 2492816 2493035 -215544123 - MIR SINE MIR -27 235 14 817 329 62 48 chr3 2493071 2493573 -215543585 + L3 LINE CR1 1019 1527 -50 2124 105 3 24 chr3 2494207 2494523 -215542635 + AluSp SINE Alu 1 310 0 194 227 0 23 chr3 2494578 2494622 -215542536 + L2 LINE L2 3262 3304 -9 1966 156 0 3 chr3 2495116 2495418 -215541740 - AluJb SINE Alu -10 302 2 2109 130 0 13 chr3 2496105 2496420 -215540738 + AluSx SINE Alu 1 311 -1 252 0 0 0 chr3 2496817 2496845 -215540313 + (CA)n Simple_repeat Simple_repeat 2 29 0 393 282 87 28 chr3 2497700 2497952 -215539206 + L1MCc LINE L1 1177 1443 -4980 225 333 0 0 chr3 2497962 2498043 -215539115 + L1MC/D LINE L1 5428 5508 -734 832 176 0 0 chr3 2498277 2498408 -215538750 + FLAM_C SINE Alu 1 131 -12 2043 110 36 7 chr3 2498420 2498721 -215538437 + AluSx SINE Alu 1 310 -2 492 310 123 0 chr3 2498751 2498938 -215538220 - L2 LINE L2 -541 2773 2564 21 57 0 0 chr3 2501551 2501586 -215535572 + AT_rich Low_complexity Low_complexity 1 35 0 1909 150 0 20 chr3 2502333 2502633 -215534525 + AluSx SINE Alu 1 294 -18 1980 125 59 0 chr3 2503252 2503539 -215533619 + AluSx SINE Alu 1 304 -8 230 132 26 0 chr3 2503548 2503586 -215533572 + MLT1B LTR MaLR 352 390 0 2855 141 7 16 chr3 2503828 2504268 -215532890 + L1PA15 LINE L1 5728 6163 -2 2378 84 7 0 chr3 2504859 2505168 -215531990 + L1PB1 LINE L1 5841 6151 0 606 230 57 63 chr3 2505284 2505436 -215531722 + L1MC5 LINE L1 7027 7178 -801 1839 150 0 14 chr3 2505436 2505723 -215531435 + AluJb SINE Alu 1 283 -29 183 42 0 0 chr3 2505726 2505750 -215531408 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 606 230 57 63 chr3 2505750 2505820 -215531338 + L1MC5 LINE L1 7180 7251 -728 285 98 0 0 chr3 2505989 2506030 -215531128 + (CA)n Simple_repeat Simple_repeat 2 42 0 431 218 44 118 chr3 2506039 2506180 -215530978 + L1MC5 LINE L1 7310 7460 -501 4795 68 0 3 chr3 2506180 2506758 -215530400 + L1PA7 LINE L1 5579 6154 0 431 218 44 118 chr3 2506758 2506769 -215530389 + L1MC5 LINE L1 7460 7470 -491 2227 129 0 0 chr3 2506769 2507080 -215530078 + AluSx SINE Alu 1 311 -1 431 218 44 118 chr3 2507080 2507155 -215530003 + L1MC5 LINE L1 7470 7521 -440 1520 213 216 17 chr3 2507183 2507591 -215529567 + LTR40a LTR ERVL 31 519 0 336 254 71 61 chr3 2507629 2507924 -215529234 - L1MCa LINE L1 -4387 2039 1742 * 5045 189 45 19 chr3 2507920 2508547 -215528611 - L1MD1 LINE L1 -1 6241 5632 2122 125 0 3 chr3 2508547 2508858 -215528300 - AluSx SINE Alu -2 310 1 5045 189 45 19 chr3 2508858 2510135 -215527023 - L1MD1 LINE L1 -610 5632 4288 11309 44 3 0 chr3 2510301 2512379 -215524779 + L1PA6 LINE L1 4066 6150 -4 1402 143 33 8 chr3 2512379 2512624 -215524534 + MER45B DNA AcHobo 790 1040 0 383 289 0 10 chr3 2512639 2512736 -215524422 - MER117 DNA MER1_type -34 163 68 300 352 80 12 chr3 2513191 2513353 -215523805 - MIR SINE MIR -56 206 34 781 165 0 24 chr3 2513511 2513629 -215523529 + FLAM_A SINE Alu 1 117 -185 294 73 0 0 chr3 2513629 2513670 -215523488 + (CA)n Simple_repeat Simple_repeat 2 42 0 630 246 89 25 chr3 2514530 2514611 -215522547 + MER33 DNA MER1_type 1 75 -2510 2061 173 42 58 chr3 2514611 2515061 -215522097 + LTR47B LTR ERVL 1 443 0 630 246 89 25 chr3 2515061 2515194 -215521964 + MER33 DNA MER1_type 75 234 -2351 432 0 0 0 chr3 2515194 2515242 -215521916 + (TA)n Simple_repeat Simple_repeat 2 49 0 630 246 89 25 chr3 2515242 2515262 -215521896 + MER33 DNA MER1_type 234 251 -73 8153 6 0 0 chr3 2515262 2516336 -215520822 - L1HS LINE L1 -16 6139 5066 2231 26 0 8 chr3 2516332 2516596 -215520562 + L1P LINE L1 3581 3842 -2304 * 1344 221 3 3 chr3 2516738 2517023 -215520135 - AluSp SINE Alu -28 285 1 396 185 0 0 chr3 2518507 2518599 -215518559 - Charlie5 DNA MER1_type -11 2601 2510 14380 45 1 3 chr3 2518600 2520361 -215516797 - L1P LINE L1 -1075 5071 3316 2604 165 34 25 chr3 2520505 2521118 -215516040 - pTR5 LTR ERV1 -1075 1363 745 230 152 0 0 chr3 2521121 2521154 -215516004 - Alu SINE Alu -266 34 2 635 261 159 8 chr3 2521188 2521445 -215515713 - L1ME3A LINE L1 -191 5979 5684 1242 124 10 38 chr3 2521708 2521917 -215515241 + AluSg/x SINE Alu 105 307 -5 1883 128 25 4 chr3 2523197 2523471 -215513687 - AluSc SINE Alu -29 280 1 6868 201 60 9 chr3 2524076 2526093 -215511065 + L1MB2 LINE L1 3678 5785 -386 2003 127 43 0 chr3 2526086 2526409 -215510749 - L1P LINE L1 -989 5157 4821 * 2844 67 6 11 chr3 2526409 2526766 -215510392 + L1PA10 LINE L1 5808 6164 -4 198 71 0 0 chr3 2527903 2527931 -215509227 + (CA)n Simple_repeat Simple_repeat 2 29 0 2122 132 90 3 chr3 2527932 2528297 -215508861 + L1MB2 LINE L1 5773 6169 -2 387 209 9 67 chr3 2528936 2529012 -215508146 + MIR SINE MIR 30 100 -162 2036 165 45 8 chr3 2529012 2529364 -215507794 + MER47A DNA MER2_type 2 366 0 387 209 9 67 chr3 2529364 2529392 -215507766 + MIR SINE MIR 100 128 -134 2901 94 20 5 chr3 2529487 2529879 -215507279 + MLT2A1 LTR ERVL 1 398 -46 26 64 0 0 chr3 2529879 2529926 -215507232 + AT_rich Low_complexity Low_complexity 1 47 0 232 154 0 19 chr3 2529926 2529978 -215507180 + LTR66 LTR ERVL 404 454 -156 * 249 62 167 21 chr3 2529948 2529996 -215507162 + MLT2A1 LTR ERVL 399 453 0 44384 65 17 11 chr3 2529996 2532637 -215504521 + HERVL-A1-A1 LTR ERVL 1 2623 -3031 2982 6 0 0 chr3 2532637 2532955 -215504203 - AluYb8 SINE Alu 0 318 1 44384 65 17 11 chr3 2532955 2535929 -215501229 + HERVL-A1-A1 LTR ERVL 2623 5654 0 2656 85 66 33 chr3 2535929 2536324 -215500834 + MLT2A1 LTR ERVL 1 412 -32 248 0 31 0 chr3 2536324 2536356 -215500802 + (TA)n Simple_repeat Simple_repeat 2 34 0 2656 85 66 33 chr3 2536356 2536383 -215500775 + MLT2A1 LTR ERVL 412 437 -7 243 214 71 0 chr3 2536847 2536903 -215500255 - MER101 LTR ERV1 -146 328 269 828 234 100 13 chr3 2537174 2537413 -215499745 + MIR SINE MIR 3 262 0 181 378 41 10 chr3 2538010 2538108 -215499050 + MIR3 SINE MIR 11 111 -97 225 170 64 0 chr3 2538240 2538287 -215498871 + CT-rich Low_complexity Low_complexity 4 53 0 258 198 143 66 chr3 2538443 2538534 -215498624 - Charlie8 DNA MER1_type -2319 98 1 208 191 117 117 chr3 2539534 2539628 -215497530 - MIR3 SINE MIR -15 193 100 585 249 127 5 chr3 2540721 2540926 -215496232 + MIR SINE MIR 20 249 -13 540 239 57 19 chr3 2541094 2541253 -215495905 - MIR SINE MIR -84 178 14 588 311 31 40 chr3 2542226 2542448 -215494710 - MIR SINE MIR -15 247 28 243 294 9 64 chr3 2542521 2542630 -215494528 + L2 LINE L2 3193 3295 -18 579 271 94 10 chr3 2543118 2543310 -215493848 + MER3 DNA MER1_type 2 209 0 317 262 82 47 chr3 2543321 2543478 -215493680 - MER5A DNA MER1_type -10 179 7 190 359 47 0 chr3 2543672 2543736 -215493422 + L2 LINE L2 3186 3252 -20 215 286 16 0 chr3 2544148 2544211 -215492947 + L2 LINE L2 3209 3272 0 189 0 0 0 chr3 2544415 2544436 -215492722 + (CAA)n Simple_repeat Simple_repeat 1 21 0 229 356 59 0 chr3 2544546 2544647 -215492511 + MIR SINE MIR 107 213 -49 2142 148 22 63 chr3 2544724 2545170 -215491988 + MLT1C LTR MaLR 36 463 -4 1754 166 28 7 chr3 2545202 2545491 -215491667 + AluJo SINE Alu 1 295 -17 24 0 0 0 chr3 2546772 2546796 -215490362 + AT_rich Low_complexity Low_complexity 1 24 0 658 191 0 48 chr3 2547414 2547515 -215489643 + MLT2B2 LTR ERVL 376 469 -46 180 0 0 0 chr3 2547515 2547535 -215489623 + (CAAT)n Simple_repeat Simple_repeat 3 22 0 658 191 0 48 chr3 2547535 2547580 -215489578 + MLT2B2 LTR ERVL 469 515 0 355 200 45 3 chr3 2549159 2549277 -215487881 - MER63A DNA MER1_type -37 173 14 373 280 0 51 chr3 2549461 2549544 -215487614 - LTR33 LTR ERVL -7 514 441 1115 208 76 90 chr3 2549544 2549976 -215487182 - MSTC LTR MaLR -2 426 1 373 280 0 51 chr3 2549976 2550049 -215487109 - LTR33 LTR ERVL -80 441 366 527 203 23 30 chr3 2550051 2550184 -215486974 - LTR33 LTR ERVL -389 132 1 258 371 44 46 chr3 2550196 2550584 -215486574 - L2 LINE L2 -558 2756 2370 350 233 56 0 chr3 2550614 2550704 -215486454 + LTR33 LTR ERVL 163 257 -264 258 301 102 18 chr3 2550797 2550963 -215486195 - L2 LINE L2 -1003 2311 2132 189 0 0 0 chr3 2551655 2551676 -215485482 + (T)n Simple_repeat Simple_repeat 1 21 0 548 310 144 53 chr3 2551983 2552399 -215484759 + L2 LINE L2 2857 3310 -3 431 305 147 10 chr3 2552402 2552599 -215484559 - MIR SINE MIR -19 243 20 236 333 66 105 chr3 2553014 2553242 -215483916 - L2 LINE L2 -6 3266 3048 308 242 121 0 chr3 2553269 2553360 -215483798 + MIR SINE MIR 73 174 -88 962 204 0 17 chr3 2553753 2553929 -215483229 - AluJb SINE Alu -3 309 137 204 300 0 0 chr3 2554093 2554143 -215483015 - MIR SINE MIR -14 248 199 417 277 97 35 chr3 2554631 2554823 -215482335 - MIR SINE MIR -12 250 57 2099 122 0 3 chr3 2555046 2555342 -215481816 + AluSx SINE Alu 1 295 -17 198 0 0 0 chr3 2556025 2556047 -215481111 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 533 296 69 0 chr3 2556072 2556231 -215480927 + MIR SINE MIR 76 245 -17 749 177 62 77 chr3 2558288 2558497 -215478661 - MER20 DNA MER1_type -13 206 1 255 255 0 0 chr3 2558632 2558683 -215478475 + L2 LINE L2 3263 3313 0 210 338 0 26 chr3 2560222 2560299 -215476859 - MIR SINE MIR -55 153 79 22 35 0 0 chr3 2560974 2561003 -215476155 + AT_rich Low_complexity Low_complexity 1 29 0 204 308 12 47 chr3 2564076 2564245 -215472913 + C-rich Low_complexity Low_complexity 5 167 0 231 88 0 0 chr3 2564656 2564690 -215472468 + (GGA)n Simple_repeat Simple_repeat 3 36 0 21 57 0 0 chr3 2565171 2565206 -215471952 + GC_rich Low_complexity Low_complexity 1 35 0 791 243 56 42 chr3 2566716 2566930 -215470228 + MIR SINE MIR 28 244 -18 207 0 0 0 chr3 2568280 2568303 -215468855 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 447 283 9 9 chr3 2568401 2568507 -215468651 - MER81 DNA DNA 0 114 9 2755 105 11 3 chr3 2568668 2569029 -215468129 - THE1B LTR MaLR 0 364 1 271 236 0 18 chr3 2569030 2569085 -215468073 - MIR3 SINE MIR -46 162 109 358 192 0 14 chr3 2569252 2569325 -215467833 - L1ME4a LINE L1 -249 5872 5801 22 0 0 0 chr3 2569512 2569534 -215467624 + AT_rich Low_complexity Low_complexity 1 22 0 329 327 62 0 chr3 2569713 2569826 -215467332 + MIR SINE MIR 1 120 -142 425 152 0 0 chr3 2569874 2569940 -215467218 + L1PA16 LINE L1 6095 6160 -6 4403 152 19 32 chr3 2569949 2570098 -215467060 + L1MB3 LINE L1 5386 5536 -647 2625 112 67 45 chr3 2570098 2570517 -215466641 + MSTA LTR MaLR 1 428 0 4403 152 19 32 chr3 2570517 2570787 -215466371 + L1MB3 LINE L1 5536 5808 -375 2506 111 36 30 chr3 2570787 2571149 -215466009 - THE1B LTR MaLR 0 364 1 4403 152 19 32 chr3 2571149 2571537 -215465621 + L1MB3 LINE L1 5808 6183 0 669 245 164 45 chr3 2571583 2571942 -215465216 - MLT1J1 LTR MaLR 0 446 45 377 323 0 0 chr3 2572967 2573060 -215464098 - MIR3 SINE MIR -7 201 109 291 274 16 0 chr3 2573114 2573176 -215463982 - MIR SINE MIR -108 100 38 1565 158 36 37 chr3 2573258 2573734 -215463424 + L1M2 LINE L1 5088 5562 -729 226 180 0 20 chr3 2573779 2573829 -215463329 + L1MCa LINE L1 2016 2064 -4362 * 278 261 23 0 chr3 2573816 2573904 -215463254 + L1MC4 LINE L1 6614 6703 -1339 1043 141 29 0 chr3 2574098 2574268 -215462890 - MLT1C LTR MaLR -285 182 8 1692 76 5 0 chr3 2574328 2574538 -215462620 + AluY SINE Alu 86 296 -15 12183 120 19 44 chr3 2574562 2574706 -215462452 + Tigger1 DNA MER2_type 1 147 -2271 1194 107 60 0 chr3 2574706 2574874 -215462284 - L1PB3 LINE L1 -1 6153 5976 12183 120 19 44 chr3 2574874 2575468 -215461690 + Tigger1 DNA MER2_type 147 755 -1663 2076 123 23 13 chr3 2575468 2575740 -215461418 + AluSq SINE Alu 1 278 -35 1113 71 24 0 chr3 2575740 2575908 -215461250 + (GAAA)n Simple_repeat Simple_repeat 2 173 0 2076 123 23 13 chr3 2575908 2575945 -215461213 + AluSq SINE Alu 278 313 0 12183 120 19 44 chr3 2575945 2577190 -215459968 + Tigger1 DNA MER2_type 755 1934 -484 2387 150 20 93 chr3 2577190 2577683 -215459475 - LTR32 LTR ERVL 0 471 15 3196 140 10 6 chr3 2577683 2578169 -215458989 + Tigger1 DNA MER2_type 1930 2417 -1 435 274 42 53 chr3 2578269 2578459 -215458699 - MIR SINE MIR -36 226 39 299 452 25 0 chr3 2578652 2578809 -215458349 - L2 LINE L2 -12 3260 3100 * 616 292 31 5 chr3 2578807 2578999 -215458159 - MIR SINE MIR -1 261 65 343 304 9 9 chr3 2579202 2579317 -215457841 + MIR SINE MIR 137 251 -11 240 289 22 44 chr3 2579613 2579703 -215457455 + L3 LINE CR1 1488 1575 -2 466 305 72 6 chr3 2580985 2581152 -215456006 + MIR SINE MIR 37 214 -48 859 73 47 80 chr3 2581752 2581767 -215455391 + L1MA5A LINE L1 6153 6167 -130 1996 148 40 35 chr3 2581767 2582140 -215455018 + THE1C LTR MaLR 1 375 0 859 73 47 80 chr3 2582140 2582248 -215454910 + L1MA5A LINE L1 6167 6273 -24 495 105 53 0 chr3 2582248 2582274 -215454884 + MADE1 DNA Mariner 1 24 -56 2284 88 19 10 chr3 2582274 2582582 -215454576 - AluY SINE Alu 0 311 1 495 105 53 0 chr3 2582582 2582631 -215454527 + MADE1 DNA Mariner 24 80 0 859 73 47 80 chr3 2582631 2582656 -215454502 + L1MA5A LINE L1 6273 6297 0 1264 195 20 28 chr3 2583370 2583701 -215453457 - MLT2B3 LTR ERVL 0 554 231 1539 155 39 0 chr3 2583713 2583971 -215453187 - MLT2A2 LTR ERVL -185 268 1 832 287 108 25 chr3 2584065 2584379 -215452779 + MER102b DNA MER1_type 2 341 0 205 288 82 0 chr3 2584481 2584554 -215452604 + L2 LINE L2 3235 3313 0 239 281 67 11 chr3 2584562 2584651 -215452507 - L3 LINE CR1 -522 1055 962 409 309 65 12 chr3 2585879 2586070 -215451088 - MIR SINE MIR -43 219 18 321 272 25 0 chr3 2586181 2586262 -215450896 - MER81 DNA DNA -5 109 27 280 184 0 20 chr3 2586285 2586334 -215450824 - MER81 DNA DNA -66 48 1 2554 124 5 22 chr3 2586513 2586883 -215450275 + THE1B LTR MaLR 1 364 0 335 320 49 0 chr3 2587141 2587263 -215449895 - MIR SINE MIR -32 230 103 405 263 75 0 chr3 2588190 2588323 -215448835 + LTR67 LTR ERVL 403 545 -12 1748 182 0 10 chr3 2588376 2588684 -215448474 - AluSx SINE Alu -7 305 1 181 263 288 12 chr3 2588770 2588850 -215448308 - MIR SINE MIR -63 145 44 2365 76 0 22 chr3 2588941 2589258 -215447900 + AluY SINE Alu 1 310 -1 321 318 77 43 chr3 2589594 2589827 -215447331 + MIR SINE MIR 5 245 -17 468 193 0 0 chr3 2590389 2590498 -215446660 + (TA)n Simple_repeat Simple_repeat 2 110 0 314 192 0 26 chr3 2590575 2590653 -215446505 + (CATA)n Simple_repeat Simple_repeat 2 77 0 261 276 35 0 chr3 2590653 2590740 -215446418 + L1MC4 LINE L1 6614 6703 -1339 231 272 0 22 chr3 2590732 2590824 -215446334 - L1MC4 LINE L1 -1339 6703 6614 * 357 208 0 0 chr3 2590825 2590902 -215446256 + (TA)n Simple_repeat Simple_repeat 1 77 0 316 283 0 22 chr3 2590902 2590994 -215446164 - L1MC4 LINE L1 -1339 6703 6614 239 267 47 0 chr3 2591004 2591090 -215446068 - L1MC4 LINE L1 -1339 6703 6614 435 211 0 0 chr3 2591091 2591186 -215445972 + (TA)n Simple_repeat Simple_repeat 2 96 0 229 261 0 22 chr3 2591186 2591278 -215445880 - L1MC4 LINE L1 -1339 6703 6614 252 214 0 0 chr3 2591279 2591335 -215445823 + (TA)n Simple_repeat Simple_repeat 1 56 0 192 97 0 0 chr3 2592013 2592044 -215445114 + (CA)n Simple_repeat Simple_repeat 1 31 0 431 143 0 39 chr3 2592217 2592294 -215444864 + AluY SINE Alu 208 281 -30 452 308 104 11 chr3 2593194 2593454 -215443704 - L2 LINE L2 0 3313 3030 269 238 179 12 chr3 2594080 2594164 -215442994 - MER5A DNA MER1_type -83 106 9 550 250 57 6 chr3 2594180 2594355 -215442803 - Charlie2 DNA MER1_type 0 2862 2679 1208 205 8 63 chr3 2594355 2594735 -215442423 - THE1C LTR MaLR 0 375 17 216 0 0 0 chr3 2596385 2596409 -215440749 + (TA)n Simple_repeat Simple_repeat 2 25 0 682 279 181 85 chr3 2598253 2599217 -215437941 + L3 LINE CR1 431 1487 -90 213 239 0 22 chr3 2599236 2599282 -215437876 + L2 LINE L2 3210 3254 -18 226 351 85 0 chr3 2599352 2599446 -215437712 + L2 LINE L2 3169 3270 -2 2587 110 11 8 chr3 2599977 2600331 -215436827 - THE1A LTR MaLR 0 355 1 5045 138 45 13 chr3 2600345 2601218 -215435940 + MER4D LTR ERV1 1 463 -2 183 42 0 0 chr3 2601315 2601339 -215435819 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 390 265 121 8 chr3 2601354 2601486 -215435672 - MIR SINE MIR -12 250 104 256 336 68 20 chr3 2601763 2601909 -215435249 - MIR3 SINE MIR -22 186 34 387 292 71 60 chr3 2602815 2602983 -215434175 + MIR3 SINE MIR 17 186 -22 432 204 60 156 chr3 2603613 2603882 -215433276 - MER112 DNA MER1_type 0 260 18 1030 258 28 60 chr3 2603884 2604237 -215432921 - LTR16A LTR ERVL -6 444 103 441 195 12 0 chr3 2604374 2604456 -215432702 - MER20 DNA MER1_type 0 219 137 1277 215 93 31 chr3 2604458 2604812 -215432346 + LTR52 LTR ERVL 4 379 -42 671 183 56 7 chr3 2604805 2604947 -215432211 - MER20 DNA MER1_type -65 154 6 * 2126 135 0 0 chr3 2605705 2606001 -215431157 - AluSg SINE Alu -14 296 1 1861 168 3 0 chr3 2606011 2606302 -215430856 - AluJb SINE Alu -20 292 1 425 289 0 18 chr3 2606666 2606780 -215430378 - MIR SINE MIR -61 147 36 283 87 22 0 chr3 2606990 2607036 -215430122 - L1MB8 LINE L1 0 6178 6132 1227 126 0 6 chr3 2607038 2607205 -215429953 - AluSg/x SINE Alu -16 296 131 3633 201 49 27 chr3 2607210 2607607 -215429551 - L1MB7 LINE L1 -37 6147 5760 1678 141 11 67 chr3 2607607 2607755 -215429403 - AluJb SINE Alu -34 278 152 2312 91 7 0 chr3 2607755 2608051 -215429107 - AluY SINE Alu -13 298 1 1678 141 11 67 chr3 2608051 2608186 -215428972 - AluJb SINE Alu -160 152 11 3633 201 49 27 chr3 2608186 2608688 -215428470 - L1MB7 LINE L1 -424 5760 5227 22 0 0 0 chr3 2608911 2608933 -215428225 + AT_rich Low_complexity Low_complexity 1 22 0 1272 169 132 33 chr3 2609380 2609652 -215427506 + AluJb SINE Alu 1 299 -13 246 289 33 22 chr3 2609706 2609796 -215427362 + MER94 DNA DNA 44 134 0 4526 28 4 0 chr3 2610599 2611101 -215426057 + L1PA4 LINE L1 5651 6154 -1 323 263 61 44 chr3 2612120 2612234 -215424924 - MIR3 SINE MIR -46 162 47 322 293 95 0 chr3 2612364 2612480 -215424678 + MIR SINE MIR 65 191 -71 345 317 0 0 chr3 2612618 2612700 -215424458 + L2 LINE L2 3232 3313 0 219 293 89 57 chr3 2612838 2612961 -215424197 + MIR3 SINE MIR 28 154 -54 773 233 41 116 chr3 2612961 2613305 -215423853 - MER102b DNA MER1_type -22 319 2 189 0 0 0 chr3 2614202 2614223 -215422935 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 627 242 56 25 chr3 2614240 2614401 -215422757 + MIR SINE MIR 24 189 -73 14488 37 1 3 chr3 2614405 2616150 -215421008 - L1PA2 LINE L1 -1444 4702 2961 8225 22 0 0 chr3 2616150 2617615 -215419543 + L1PA2 LINE L1 4691 6155 0 369 319 35 0 chr3 2617820 2617933 -215419225 - L2 LINE L2 -1 3271 3155 443 275 126 33 chr3 2618070 2618252 -215418906 - MIR SINE MIR -6 256 58 1971 139 85 20 chr3 2619141 2619493 -215417665 + THE1C LTR MaLR 1 375 0 2647 24 0 0 chr3 2619604 2619901 -215417257 + AluYb8 SINE Alu 19 315 -3 1132 246 113 19 chr3 2620010 2620380 -215416778 + MLT1E2 LTR MaLR 1 405 -221 921 241 0 5 chr3 2620498 2620689 -215416469 + MLT1D LTR MaLR 316 505 0 231 250 0 0 chr3 2620693 2620741 -215416417 - MIR SINE MIR -92 116 69 437 259 64 64 chr3 2620784 2621050 -215416108 + L2 LINE L2 3047 3312 -1 286 226 250 32 chr3 2621106 2621230 -215415928 - MIR3 SINE MIR -25 183 33 795 183 0 0 chr3 2621664 2621784 -215415374 - FLAM_A SINE Alu -13 120 1 299 348 17 8 chr3 2622767 2622885 -215414273 + MIR3 SINE MIR 41 159 -49 661 194 12 0 chr3 2622958 2623118 -215414040 + CT-rich Low_complexity Low_complexity 1 162 0 1814 193 0 0 chr3 2623129 2623424 -215413734 - AluJo SINE Alu -17 295 1 245 268 18 0 chr3 2623534 2623590 -215413568 + MER102b DNA MER1_type 285 341 0 1311 219 15 8 chr3 2623914 2624179 -215412979 + MLT1H LTR MaLR 8 274 -275 1942 141 18 0 chr3 2624179 2624463 -215412695 + AluSx SINE Alu 9 297 -15 1252 198 108 35 chr3 2624558 2624939 -215412219 + MLT2B1 LTR ERVL 1 371 -43 2730 96 19 16 chr3 2624939 2625302 -215411856 - THE1B LTR MaLR 0 364 1 1252 198 108 35 chr3 2625302 2625350 -215411808 + MLT2B1 LTR ERVL 371 414 0 272 187 53 67 chr3 2625358 2625433 -215411725 - MIR SINE MIR -104 104 31 248 265 81 37 chr3 2627679 2627815 -215409343 - MER20B DNA MER1_type -147 636 495 311 254 9 118 chr3 2627920 2628030 -215409128 - MER81 DNA DNA -16 98 1 2194 144 57 36 chr3 2628621 2629009 -215408149 + MSTD LTR MaLR 1 396 0 2482 63 0 3 chr3 2629115 2629436 -215407722 - AluY SINE Alu 0 330 11 439 195 80 9 chr3 2631323 2631436 -215405722 - LTR16C LTR ERVL 0 491 371 534 172 57 146 chr3 2631452 2631644 -215405514 + MER21B LTR ERV1 13 187 -676 1238 190 0 5 chr3 2631695 2631911 -215405247 - AluJo SINE Alu -14 298 84 1501 225 35 52 chr3 2631949 2632353 -215404805 + MER21B LTR ERV1 360 756 -107 918 236 90 55 chr3 2632373 2632716 -215404442 - LTR16C LTR ERVL -120 371 17 2505 134 59 20 chr3 2632767 2633176 -215403982 + MSTA LTR MaLR 4 428 0 255 133 0 0 chr3 2633510 2633555 -215403603 + (TG)n Simple_repeat Simple_repeat 1 45 0 2193 128 0 0 chr3 2635319 2635616 -215401542 - AluSx SINE Alu -10 302 6 654 309 94 62 chr3 2635806 2635905 -215401253 - L2 LINE L2 -49 3264 3170 2947 204 65 24 chr3 2635905 2636531 -215400627 - MER82 DNA MER2_type -1 652 1 654 309 94 62 chr3 2636531 2637321 -215399837 - L2 LINE L2 -143 3170 2348 1416 279 22 16 chr3 2637321 2637690 -215399468 + MLT1G1 LTR MaLR 16 386 -209 746 312 69 52 chr3 2637812 2638273 -215398885 - L2 LINE L2 -952 2362 1894 267 337 163 0 chr3 2638352 2638518 -215398640 - MIR SINE MIR -1 261 69 304 197 53 92 chr3 2638584 2638736 -215398422 + L1MC5 LINE L1 7650 7795 -166 271 270 36 36 chr3 2639930 2640041 -215397117 + L2 LINE L2 3203 3313 0 1557 239 59 11 chr3 2641058 2641430 -215395728 + MLT1B LTR MaLR 1 390 0 189 49 24 49 chr3 2641553 2641594 -215395564 + (TATAA)n Simple_repeat Simple_repeat 3 42 0 987 196 49 85 chr3 2641638 2641944 -215395214 + MLT1C LTR MaLR 1 295 -172 1894 199 26 46 chr3 2641959 2642417 -215394741 - LTR2 LTR ERV1 0 449 1 508 62 0 0 chr3 2642419 2642483 -215394675 + MADE1 DNA Mariner 17 80 0 574 255 16 10 chr3 2642492 2642671 -215394487 + MLT1C LTR MaLR 323 467 0 439 244 15 69 chr3 2642925 2643056 -215394102 - MIR SINE MIR -92 170 47 2784 229 21 57 chr3 2643369 2644086 -215393072 + LTR8 LTR ERV1 1 691 0 272 195 13 39 chr3 2644340 2644417 -215392741 + A-rich Low_complexity Low_complexity 4 78 0 347 265 71 0 chr3 2644675 2644773 -215392385 + MIR3 SINE MIR 81 185 -23 1500 133 0 0 chr3 2645401 2645626 -215391532 + L1P LINE L1 4890 5114 -1032 220 314 119 22 chr3 2645964 2646149 -215391009 + MIR SINE MIR 48 250 -12 206 273 0 0 chr3 2646116 2646160 -215390998 + L2 LINE L2 3263 3306 -7 * 6796 90 7 6 chr3 2647518 2648582 -215388576 + L1PA12 LINE L1 5104 6168 0 500 297 106 29 chr3 2648772 2648921 -215388237 + L1ME4a LINE L1 5540 5676 -445 2108 100 7 0 chr3 2648921 2649230 -215387928 - AluSx SINE Alu 0 311 1 500 297 106 29 chr3 2649230 2649419 -215387739 + L1ME4a LINE L1 5676 5905 -216 21 57 0 0 chr3 2649494 2649529 -215387629 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr3 2650202 2650223 -215386935 + AT_rich Low_complexity Low_complexity 1 21 0 1715 126 4 12 chr3 2650270 2650525 -215386633 + AluJb SINE Alu 17 269 -43 255 214 121 79 chr3 2650535 2650675 -215386483 + MIR SINE MIR 66 211 -51 2579 139 10 5 chr3 2650989 2651377 -215385781 + MLT1B LTR MaLR 1 390 0 912 231 62 5 chr3 2652027 2652235 -215384923 + MIR SINE MIR 33 252 -10 333 318 9 0 chr3 2652359 2652466 -215384692 - MIR SINE MIR -1 261 154 869 296 33 36 chr3 2652467 2652798 -215384360 - MLT1I LTR MaLR 0 409 80 218 284 65 110 chr3 2652839 2652994 -215384164 - MIR SINE MIR -105 157 10 1729 206 116 12 chr3 2653034 2653457 -215383701 + MLT1C LTR MaLR 1 467 0 296 243 71 48 chr3 2653536 2653678 -215383480 + L2 LINE L2 3011 3268 -4 312 288 135 24 chr3 2653902 2654072 -215383086 - LTR16A LTR ERVL -2 448 260 216 270 16 32 chr3 2654665 2654728 -215382430 + L2 LINE L2 3252 3313 0 653 270 76 45 chr3 2655230 2655585 -215381573 + MLT1K LTR MaLR 170 535 -53 5842 157 22 24 chr3 2655590 2656667 -215380491 - L1MA9 LINE L1 0 6312 5237 298 189 0 0 chr3 2656669 2656722 -215380436 + MLT1K LTR MaLR 525 577 -11 778 250 81 21 chr3 2657464 2657700 -215379458 - MIR SINE MIR -11 251 2 21 36 0 0 chr3 2658123 2658151 -215379007 + AT_rich Low_complexity Low_complexity 1 28 0 210 259 134 9 chr3 2658838 2658950 -215378208 + MIR3 SINE MIR 78 203 -5 2585 23 3 10 chr3 2659226 2659525 -215377633 + AluY SINE Alu 1 297 -14 1432 267 75 50 chr3 2659660 2660262 -215376896 + MER21B LTR ERV1 98 714 -149 666 303 0 15 chr3 2660413 2660611 -215376547 - MIR SINE MIR -49 213 19 404 294 9 9 chr3 2660636 2660745 -215376413 + MIR SINE MIR 154 262 0 597 260 25 69 chr3 2662012 2662064 -215375094 - L2 LINE L2 0 3313 3260 1645 145 0 11 chr3 2662064 2662326 -215374832 - AluJo SINE Alu -3 309 51 597 260 25 69 chr3 2662326 2662477 -215374681 - L2 LINE L2 -53 3260 3119 667 282 29 67 chr3 2662513 2662857 -215374301 - L2 LINE L2 -343 2971 2641 294 281 65 51 chr3 2662930 2663095 -215374063 + MIR3 SINE MIR 34 200 -8 4488 176 49 59 chr3 2663897 2664944 -215372214 + L1MA9 LINE L1 5211 6274 -38 256 100 80 0 chr3 2664980 2665030 -215372128 + L1MA9 LINE L1 6221 6274 -38 2116 178 117 42 chr3 2665164 2665768 -215371390 - MLT1E2 LTR MaLR 0 626 1 392 246 111 8 chr3 2665800 2665926 -215371232 - LTR16C LTR ERVL 0 491 353 217 243 63 12 chr3 2666090 2666175 -215370983 - MIR SINE MIR -66 142 70 301 231 106 48 chr3 2666586 2666690 -215370468 + MIR SINE MIR 22 131 -131 442 240 68 48 chr3 2666756 2666903 -215370255 - MIR3 SINE MIR -63 145 15 709 297 122 30 chr3 2667424 2667899 -215369259 - L2 LINE L2 0 3313 2763 553 217 35 0 chr3 2668769 2668884 -215368274 - MER5A DNA MER1_type -22 167 49 1032 62 0 0 chr3 2668884 2669029 -215368129 + (ATG)n Simple_repeat Simple_repeat 1 145 0 188 347 97 35 chr3 2669029 2669059 -215368099 + MER5B DNA MER1_type 150 177 -1 540 309 124 0 chr3 2669797 2670014 -215367144 - MIR SINE MIR -3 259 16 29 28 0 0 chr3 2670597 2670633 -215366525 + AT_rich Low_complexity Low_complexity 1 36 0 785 142 24 8 chr3 2671072 2671199 -215365959 - MER74B LTR ERVL -3 619 491 3951 147 31 38 chr3 2671205 2671921 -215365237 - MER50 LTR ERV1 -23 711 1 1907 202 58 32 chr3 2671924 2672355 -215364803 - MER74B LTR ERVL -126 496 55 254 306 83 0 chr3 2672652 2672760 -215364398 - MIR SINE MIR -73 189 73 328 264 60 39 chr3 2673503 2673685 -215363473 - MIR SINE MIR 0 262 77 369 0 0 0 chr3 2675244 2675285 -215361873 + (A)n Simple_repeat Simple_repeat 1 41 0 381 278 93 0 chr3 2676013 2676121 -215361037 + MIR3 SINE MIR 91 208 0 689 332 43 8 chr3 2676263 2676498 -215360660 - MIR SINE MIR 0 262 20 434 327 63 33 chr3 2677610 2677910 -215359248 + L2 LINE L2 3005 3313 0 395 321 45 0 chr3 2678108 2678242 -215358916 - L2 LINE L2 0 3272 3133 476 285 58 7 chr3 2678741 2678878 -215358280 + MIR SINE MIR 28 171 -91 23 0 0 0 chr3 2679354 2679377 -215357781 + AT_rich Low_complexity Low_complexity 1 23 0 3135 168 26 22 chr3 2679384 2680005 -215357153 - L1MB5 LINE L1 -13 6161 5539 21 36 0 0 chr3 2680193 2680221 -215356937 + AT_rich Low_complexity Low_complexity 1 28 0 3419 134 11 0 chr3 2680388 2680909 -215356249 - MER1A DNA MER1_type -2 527 1 197 222 48 63 chr3 2681395 2681458 -215355700 - L2 LINE L2 0 3313 3252 493 320 100 42 chr3 2681813 2682194 -215354964 + L2 LINE L2 2829 3231 -41 225 65 0 0 chr3 2682737 2682768 -215354390 + (CA)n Simple_repeat Simple_repeat 2 32 0 195 42 0 0 chr3 2683655 2683679 -215353479 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1152 309 45 44 chr3 2683807 2684335 -215352823 - MLT1K LTR MaLR -37 551 23 336 102 0 0 chr3 2684353 2684402 -215352756 + (TG)n Simple_repeat Simple_repeat 1 49 0 315 0 0 0 chr3 2684401 2684436 -215352722 + (GA)n Simple_repeat Simple_repeat 1 35 0 * 591 234 61 61 chr3 2684462 2684723 -215352435 + MLT1H LTR MaLR 40 300 -249 225 281 0 0 chr3 2684839 2684903 -215352255 + MLT1H LTR MaLR 484 547 -2 1617 176 3 24 chr3 2685561 2685891 -215351267 - AluJo SINE Alu 0 324 1 306 323 144 20 chr3 2686621 2686816 -215350342 + MIR SINE MIR 40 258 -4 217 268 0 18 chr3 2687171 2687227 -215349931 - MIR3 SINE MIR -23 185 131 307 354 0 15 chr3 2688446 2688576 -215348582 - MIR3 SINE MIR -69 139 12 314 284 21 100 chr3 2688852 2689042 -215348116 - MER102a DNA MER1_type -4 326 152 3745 150 50 17 chr3 2689106 2689824 -215347334 + Tigger2 DNA MER2_type 3 744 -1974 1509 126 16 0 chr3 2689890 2690144 -215347014 + Tigger2 DNA MER2_type 2461 2718 0 427 288 56 30 chr3 2690247 2690445 -215346713 + L3 LINE CR1 1043 1245 -332 455 221 174 35 chr3 2690658 2690830 -215346328 - MER58C DNA MER1_type -19 196 1 294 257 109 0 chr3 2690969 2691070 -215346088 + MER103 DNA DNA 9 120 -46 549 80 0 0 chr3 2691123 2691198 -215345960 + (CA)n Simple_repeat Simple_repeat 2 76 0 2333 35 11 0 chr3 2691213 2691500 -215345658 - AluY SINE Alu -21 290 1 1395 187 28 0 chr3 2692035 2692319 -215344839 - L1MA4A LINE L1 -11 6292 6001 286 332 103 23 chr3 2692454 2692668 -215344490 + MIR SINE MIR 30 260 -2 3227 160 22 2 chr3 2692951 2693490 -215343668 - MER44D DNA MER2_type 0 605 1 956 285 0 12 chr3 2693803 2694049 -215343109 - MIR SINE MIR -17 245 3 1077 168 16 16 chr3 2694049 2694239 -215342919 + AluJo SINE Alu 112 301 -11 3119 221 59 9 chr3 2694252 2695525 -215341633 + L1MB7 LINE L1 4844 6184 0 7048 132 14 18 chr3 2695701 2697804 -215339354 - L1PA13 LINE L1 -24 6139 4052 1889 174 17 6 chr3 2698654 2698999 -215338159 - MER93b LTR ERV1 -24 349 1 594 220 0 38 chr3 2699012 2699144 -215338014 - MIR3 SINE MIR -11 197 71 274 299 28 9 chr3 2699185 2699292 -215337866 - MIR3 SINE MIR -10 198 90 187 304 104 55 chr3 2699613 2699814 -215337344 - MIR3 SINE MIR -45 217 2 2561 52 0 0 chr3 2699833 2700141 -215337017 - AluY SINE Alu -3 308 1 330 303 189 0 chr3 2702083 2702215 -215334943 - MIR SINE MIR -8 254 98 183 283 54 22 chr3 2704471 2704563 -215332595 - MIR SINE MIR 0 262 168 230 250 43 43 chr3 2705870 2705962 -215331196 - MIR SINE MIR -75 187 96 601 286 49 16 chr3 2706750 2706935 -215330223 + MIR SINE MIR 11 201 -61 237 263 0 0 chr3 2707324 2707381 -215329777 + L2 LINE L2 3204 3260 -12 229 271 42 93 chr3 2707482 2707600 -215329558 + L2 LINE L2 3145 3256 -16 206 103 0 26 chr3 2708373 2708412 -215328746 + (TC)n Simple_repeat Simple_repeat 1 38 0 1776 230 113 33 chr3 2709495 2710073 -215327085 + MLT1E2 LTR MaLR 3 626 0 233 321 73 22 chr3 2710167 2710304 -215326854 + MIR SINE MIR 52 195 -67 419 215 15 0 chr3 2710599 2710705 -215326453 - MER5A DNA MER1_type -78 111 4 309 248 88 40 chr3 2712129 2712254 -215324904 - L1ME LINE L1 -394 5727 5597 232 338 59 0 chr3 2712507 2712575 -215324583 - L2 LINE L2 0 3272 3201 189 0 0 0 chr3 2712752 2712773 -215324385 + (CATA)n Simple_repeat Simple_repeat 4 24 0 542 215 18 6 chr3 2712875 2713032 -215324126 - L1P4 LINE L1 -536 5630 5468 6158 129 83 24 chr3 2713374 2714536 -215322622 + Tigger3b DNA MER2_type 1 1231 0 21 0 0 0 chr3 2714593 2714614 -215322544 + AT_rich Low_complexity Low_complexity 1 21 0 536 262 0 0 chr3 2715036 2715177 -215321981 + L1MA10 LINE L1 6190 6330 -4 256 349 113 5 chr3 2716198 2716410 -215320748 - L2 LINE L2 0 3313 3079 653 194 47 29 chr3 2716559 2716729 -215320429 - MER5B DNA MER1_type 0 178 6 555 274 27 43 chr3 2716736 2716922 -215320236 - MER5A DNA MER1_type 0 189 7 9960 138 29 1 chr3 2717208 2718882 -215318276 - Tigger1 DNA MER2_type -4 2414 694 2657 158 16 28 chr3 2718880 2719381 -215317777 - Tigger1 DNA MER2_type -1919 499 5 * 835 192 123 78 chr3 2719441 2719629 -215317529 - MLT1A1 LTR MaLR -17 348 137 2293 116 0 3 chr3 2719629 2719932 -215317226 - AluSg SINE Alu -8 302 1 835 192 123 78 chr3 2719932 2720076 -215317082 - MLT1A1 LTR MaLR -228 137 1 4781 163 30 5 chr3 2720606 2721644 -215315514 + L1PA16 LINE L1 5102 6163 -3 266 293 91 10 chr3 2722419 2722518 -215314640 - MIR SINE MIR -70 192 86 426 176 88 0 chr3 2722524 2722615 -215314543 - L2 LINE L2 -4 3268 3170 2523 71 0 0 chr3 2722693 2723003 -215314155 + AluY SINE Alu 1 310 -1 351 313 41 27 chr3 2723044 2723191 -215313967 - MIR SINE MIR -18 244 96 289 365 0 0 chr3 2724234 2724319 -215312839 + MIR SINE MIR 62 146 -62 267 109 0 43 chr3 2724340 2724386 -215312772 + MLT2B1 LTR ERVL 473 516 -4 1987 235 38 8 chr3 2724390 2725016 -215312142 + ERVL LTR ERVL 1 662 -5030 1259 211 99 0 chr3 2725187 2725471 -215311687 + ERVL LTR ERVL 690 1001 -4763 604 242 20 6 chr3 2725853 2726008 -215311150 + MLT1D LTR MaLR 322 442 -63 432 0 0 0 chr3 2726504 2726552 -215310606 + (TG)n Simple_repeat Simple_repeat 2 49 0 1729 137 17 30 chr3 2726872 2727171 -215309987 + AluSx SINE Alu 9 303 -9 533 218 247 6 chr3 2727171 2727341 -215309817 + MIR SINE MIR 51 261 -1 351 278 32 24 chr3 2727775 2727901 -215309257 + MIR SINE MIR 20 146 -116 1665 151 17 31 chr3 2728898 2729189 -215307969 - AluJb SINE Alu -17 295 9 226 229 0 0 chr3 2729709 2729770 -215307388 + T-rich Low_complexity Low_complexity 1 61 0 8147 14 0 0 chr3 2729772 2731005 -215306153 - L1HS LINE L1 0 6155 4923 833 129 103 189 chr3 2731241 2731375 -215305783 + MER33 DNA MER1_type 1 145 -2440 1720 167 20 7 chr3 2731375 2731669 -215305489 - AluJb SINE Alu -14 298 1 833 129 103 189 chr3 2731669 2731884 -215305274 + MER33 DNA MER1_type 145 320 -4 533 236 48 36 chr3 2732111 2732276 -215304882 - MER5B DNA MER1_type -1 177 11 287 367 17 0 chr3 2732564 2732684 -215304474 + MIR SINE MIR 8 129 -133 854 131 77 0 chr3 2732873 2733003 -215304155 - FRAM SINE Alu -17 159 20 624 99 148 10 chr3 2733052 2733153 -215304005 + FLAM_C SINE Alu 5 119 -24 23 0 0 0 chr3 2733158 2733181 -215303977 + AT_rich Low_complexity Low_complexity 1 23 0 4587 91 21 21 chr3 2733652 2733843 -215303315 + PABL_A LTR ERV1 1 191 -469 2348 93 0 7 chr3 2733843 2734153 -215303005 - AluSx SINE Alu -4 308 1 4587 91 21 21 chr3 2734153 2734612 -215302546 + PABL_A LTR ERV1 190 651 -9 1828 97 37 23 chr3 2736219 2736519 -215300639 - AluSq SINE Alu -9 304 1 1021 210 189 7 chr3 2737077 2737291 -215299867 + MER2 DNA MER2_type 1 283 -61 2314 92 0 0 chr3 2737291 2737586 -215299572 - AluSx SINE Alu -13 299 5 1021 210 189 7 chr3 2737586 2737662 -215299496 + MER2 DNA MER2_type 283 344 0 266 50 25 0 chr3 2737662 2737702 -215299456 + (GA)n Simple_repeat Simple_repeat 1 41 0 746 278 72 30 chr3 2737737 2738100 -215299058 + L1M4 LINE L1 3292 3669 -2477 386 300 55 9 chr3 2738737 2738847 -215298311 + L2 LINE L2 3153 3267 -5 1805 132 69 0 chr3 2738970 2739259 -215297899 - AluSx SINE Alu -3 309 1 477 290 95 68 chr3 2739430 2739651 -215297507 - MIR SINE MIR -34 228 2 359 337 53 60 chr3 2739652 2740042 -215297116 + L2 LINE L2 2686 3074 -198 1105 184 120 5 chr3 2741481 2741698 -215295460 + AluJb SINE Alu 58 299 -13 1702 187 33 3 chr3 2741839 2742138 -215295020 + AluJo SINE Alu 1 308 -4 875 144 0 41 chr3 2747131 2747277 -215289881 + AluSg/x SINE Alu 135 274 -36 753 215 7 0 chr3 2747532 2747681 -215289477 - L1 LINE L1 -1063 5083 4934 943 227 20 49 chr3 2748561 2748808 -215288350 + MIR SINE MIR 2 241 -21 1096 157 8 44 chr3 2749858 2750106 -215287052 - AluJb SINE Alu -5 307 69 22 56 0 0 chr3 2750414 2750450 -215286708 + GC_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 2750492 2750513 -215286645 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 2750517 2750541 -215286617 + GC_rich Low_complexity Low_complexity 1 24 0 36 26 0 0 chr3 2750586 2750624 -215286534 + GC_rich Low_complexity Low_complexity 1 38 0 8217 61 2 2 chr3 2752040 2753087 -215284071 + L1P LINE L1 1098 2144 -4002 185 315 0 0 chr3 2753295 2753349 -215283809 - L2 LINE L2 -8 3264 3211 320 116 0 0 chr3 2753421 2753480 -215283678 + Alu SINE Alu 1 40 -263 695 125 0 0 chr3 2753480 2753576 -215283582 + AluSg/x SINE Alu 206 301 -9 180 152 0 0 chr3 2754141 2754174 -215282984 + (CAT)n Simple_repeat Simple_repeat 1 33 0 756 135 0 0 chr3 2754362 2754473 -215282685 + MLT2A1 LTR ERVL 288 398 -46 457 196 17 12 chr3 2754489 2754662 -215282496 + (TA)n Simple_repeat Simple_repeat 2 175 0 312 279 23 0 chr3 2754665 2754751 -215282407 - L1MC4 LINE L1 -1340 6702 6615 453 147 0 0 chr3 2754752 2754847 -215282311 + (TA)n Simple_repeat Simple_repeat 2 96 0 418 73 0 0 chr3 2754855 2754910 -215282248 + MLT2A2 LTR ERVL 399 453 0 3754 177 29 2 chr3 2754912 2755535 -215281623 + MER52-int LTR ERV1 2400 3039 -4052 21 71 0 0 chr3 2755687 2755729 -215281429 + AT_rich Low_complexity Low_complexity 1 42 0 2680 119 3 13 chr3 2755849 2756228 -215280930 + THE1C LTR MaLR 1 375 0 2929 93 82 102 chr3 2756228 2756755 -215280403 + THE1C-int LTR MaLR 1 516 -1064 9262 45 4 0 chr3 2756879 2758009 -215279149 - L1P LINE L1 -1184 4962 3828 26 30 0 0 chr3 2758758 2758791 -215278367 + AT_rich Low_complexity Low_complexity 1 33 0 227 261 54 43 chr3 2759639 2759731 -215277427 + MIR SINE MIR 103 195 -67 1663 156 3 52 chr3 2761161 2761489 -215275669 - AluJb SINE Alu 0 312 1 180 200 0 60 chr3 2761507 2761557 -215275601 - MIR SINE MIR -106 156 110 1665 157 18 11 chr3 2762115 2762401 -215274757 + AluJo SINE Alu 1 288 -24 207 187 36 65 chr3 2764108 2764247 -215272911 + (CATAA)n Simple_repeat Simple_repeat 5 139 0 1538 301 175 12 chr3 2764821 2765627 -215271531 - L3 LINE CR1 -89 1488 552 1379 186 50 47 chr3 2766051 2766195 -215270963 + AluJo SINE Alu 1 143 -169 1451 198 0 62 chr3 2766195 2766518 -215270640 + AluSx SINE Alu 1 303 -9 1379 186 50 47 chr3 2766518 2766674 -215270484 + AluJo SINE Alu 143 302 -10 406 178 140 19 chr3 2768185 2768292 -215268866 + MIR SINE MIR 103 222 -40 207 0 0 0 chr3 2768637 2768660 -215268498 + (A)n Simple_repeat Simple_repeat 1 23 0 206 238 16 0 chr3 2769198 2769261 -215267897 + (GTTTG)n Simple_repeat Simple_repeat 1 64 0 23 33 0 0 chr3 2769571 2769601 -215267557 + AT_rich Low_complexity Low_complexity 1 30 0 243 333 0 41 chr3 2770650 2770821 -215266337 + GA-rich Low_complexity Low_complexity 4 167 0 * 251 288 23 11 chr3 2770726 2770832 -215266326 + GA-rich Low_complexity Low_complexity 1 107 0 1298 181 42 0 chr3 2771058 2771273 -215265885 + MER58A DNA MER1_type 1 224 0 1974 223 47 10 chr3 2771291 2771798 -215265360 + L1M4 LINE L1 4413 4938 -1208 309 350 57 13 chr3 2771956 2772113 -215265045 - MIR3 SINE MIR 0 208 45 876 169 0 0 chr3 2772196 2772326 -215264832 + FLAM_A SINE Alu 3 132 -1 2208 114 23 0 chr3 2772910 2773209 -215263949 - AluJb SINE Alu -6 306 1 2071 130 0 3 chr3 2773311 2773604 -215263554 - AluSg SINE Alu -16 294 3 395 283 145 0 chr3 2774416 2774554 -215262604 + MIR SINE MIR 40 197 -65 930 37 0 0 chr3 2775008 2775116 -215262042 - L1PA4 LINE L1 -2 6153 6046 1857 146 4 4 chr3 2775190 2775470 -215261688 + AluSx SINE Alu 1 280 -32 358 306 73 8 chr3 2775646 2775770 -215261388 - L2 LINE L2 0 3272 3141 2287 104 0 3 chr3 2776256 2776555 -215260603 + AluSx SINE Alu 1 298 -14 341 315 109 25 chr3 2776902 2777140 -215260018 + L2 LINE L2 2232 2489 -825 280 226 252 9 chr3 2777241 2777356 -215259802 + MIR3 SINE MIR 40 182 -26 2314 72 6 28 chr3 2777455 2777773 -215259385 + AluY SINE Alu 1 311 0 181 317 99 49 chr3 2777955 2778097 -215259061 + MIR SINE MIR 3 151 -111 22 0 0 0 chr3 2778163 2778185 -215258973 + AT_rich Low_complexity Low_complexity 1 22 0 194 331 23 62 chr3 2778220 2778349 -215258809 - MIR SINE MIR -75 133 2 1873 72 103 4 chr3 2778420 2778682 -215258476 + AluSc SINE Alu 5 292 -17 209 296 14 28 chr3 2779720 2779791 -215257367 + MIR SINE MIR 20 89 -119 232 235 123 0 chr3 2779980 2780061 -215257097 + MIR3 SINE MIR 102 192 -16 212 342 13 0 chr3 2780689 2780768 -215256390 - MIR SINE MIR -59 149 70 1409 142 0 0 chr3 2781107 2781325 -215255833 - L1PB3 LINE L1 -3 6151 5934 24 53 0 0 chr3 2782002 2782040 -215255118 + AT_rich Low_complexity Low_complexity 1 38 0 239 119 0 51 chr3 2784111 2784170 -215252988 + (CTA)n Simple_repeat Simple_repeat 1 56 0 423 246 53 18 chr3 2784793 2784907 -215252251 + MIR3 SINE MIR 14 131 -77 1851 146 35 0 chr3 2785931 2786102 -215251056 - AluSx SINE Alu -14 298 112 414 0 0 0 chr3 2786102 2786148 -215251010 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1851 146 35 0 chr3 2786148 2786264 -215250894 - AluSx SINE Alu -200 112 1 228 109 455 0 chr3 2786653 2786708 -215250450 + MADE1 DNA Mariner 1 80 0 2163 100 7 0 chr3 2787159 2787470 -215249688 + AluSx SINE Alu 1 313 0 1932 163 0 0 chr3 2787489 2787777 -215249381 - AluJb SINE Alu -19 293 6 982 124 0 7 chr3 2787777 2787914 -215249244 - AluJb SINE Alu -176 136 1 281 136 0 0 chr3 2787914 2787958 -215249200 - Alu SINE Alu -256 44 1 * 501 134 93 64 chr3 2787958 2788129 -215249029 + Charlie5 DNA MER1_type 2445 2620 0 534 236 48 36 chr3 2788356 2788521 -215248637 - MER5B DNA MER1_type -1 177 11 272 375 17 0 chr3 2788816 2788936 -215248222 + MIR SINE MIR 8 129 -133 860 131 77 0 chr3 2789125 2789255 -215247903 - FRAM SINE Alu -17 159 20 558 109 148 10 chr3 2789304 2789405 -215247753 + FLAM_C SINE Alu 5 119 -24 23 0 0 0 chr3 2789410 2789433 -215247725 + AT_rich Low_complexity Low_complexity 1 23 0 4312 90 17 21 chr3 2789904 2790098 -215247060 + PABL_A LTR ERV1 1 194 -466 2223 94 0 7 chr3 2790098 2790395 -215246763 - AluSx SINE Alu -17 295 1 4312 90 17 21 chr3 2790395 2790854 -215246304 + PABL_A LTR ERV1 194 651 -9 201 161 0 0 chr3 2792001 2792032 -215245126 + (CATATA)n Simple_repeat Simple_repeat 1 31 0 1209 267 73 9 chr3 2792622 2792963 -215244195 + MLT1E2 LTR MaLR 264 626 0 411 320 130 8 chr3 2794151 2794404 -215242754 - L3 LINE CR1 -6 1571 1288 258 337 101 22 chr3 2794417 2794595 -215242563 - MIR3 SINE MIR -14 194 3 270 298 158 25 chr3 2794662 2794820 -215242338 + MIR SINE MIR 47 225 -37 461 256 105 42 chr3 2794862 2795053 -215242105 - L2 LINE L2 -6 3307 3105 780 133 5 1 chr3 2795058 2795071 -215242087 + L1P4 LINE L1 5386 5397 -771 4649 81 3 3 chr3 2795071 2795699 -215241459 - L1PA10 LINE L1 0 6168 5541 780 133 5 1 chr3 2795699 2795826 -215241332 + L1PA10 LINE L1 5397 5531 -637 502 331 89 15 chr3 2795829 2796172 -215240986 - L2 LINE L2 -251 3062 2698 401 309 46 29 chr3 2796172 2796347 -215240811 - MER5B DNA MER1_type 0 178 1 390 195 121 10 chr3 2796913 2797061 -215240097 + MER20 DNA MER1_type 1 219 0 187 275 288 0 chr3 2797220 2797300 -215239858 - L2 LINE L2 -8 3264 3162 362 330 58 19 chr3 2797528 2797734 -215239424 - MLT1H LTR MaLR -296 253 40 22 56 0 0 chr3 2798518 2798554 -215238604 + AT_rich Low_complexity Low_complexity 1 36 0 318 340 32 26 chr3 2799513 2799669 -215237489 + MIR3 SINE MIR 33 189 -19 336 292 149 30 chr3 2799869 2800037 -215237121 + MIR3 SINE MIR 3 190 -18 273 362 58 31 chr3 2801479 2801703 -215235455 + MIR SINE MIR 33 262 0 205 191 16 48 chr3 2801840 2801903 -215235255 + (TATATG)n Simple_repeat Simple_repeat 3 63 0 459 314 66 43 chr3 2802016 2802319 -215234839 - L1ME LINE L1 -318 5803 5494 11425 181 77 8 chr3 2802414 2805362 -215231796 + L1ME1 LINE L1 5 3175 -3207 3001 240 73 2 chr3 2805360 2806292 -215230866 + L1ME1 LINE L1 4187 5184 -1198 * 484 142 150 0 chr3 2806286 2806406 -215230752 - L1ME LINE L1 -455 5711 5574 * 579 260 115 40 chr3 2806409 2806705 -215230453 + L1ME1 LINE L1 6076 6393 -9 304 289 65 20 chr3 2807019 2807220 -215229938 + L1ME4a LINE L1 4616 4825 -1321 190 242 65 16 chr3 2807439 2807501 -215229657 - L3b LINE CR1 -118 1465 1401 366 312 48 32 chr3 2807875 2808061 -215229097 + L1ME4a LINE L1 5768 5956 -165 192 250 0 23 chr3 2808341 2808385 -215228773 - L2 LINE L2 -16 3256 3214 239 347 53 0 chr3 2809051 2809126 -215228032 + L2 LINE L2 3134 3212 -60 2317 61 10 13 chr3 2809140 2809479 -215227679 - AluY SINE Alu 0 338 1 2388 56 0 3 chr3 2809585 2809887 -215227271 + AluY SINE Alu 1 301 -10 192 162 108 0 chr3 2810136 2810173 -215226985 + L2 LINE L2 3198 3238 -75 199 260 0 65 chr3 2811325 2811402 -215225756 + MIR SINE MIR 108 179 -83 1296 223 86 45 chr3 2812324 2812768 -215224390 + MLT1C LTR MaLR 6 467 0 466 282 75 21 chr3 2812796 2812984 -215224174 + MIR SINE MIR 49 246 -16 188 382 6 77 chr3 2813830 2814000 -215223158 - MIR3 SINE MIR -11 197 40 700 34 0 0 chr3 2814395 2814483 -215222675 + L1PA3 LINE L1 6067 6154 -1 208 340 92 13 chr3 2817357 2817510 -215219648 + L2 LINE L2 2740 2904 -410 350 282 53 23 chr3 2817792 2817923 -215219235 + MIR SINE MIR 107 241 -21 2737 109 17 45 chr3 2817946 2818412 -215218746 + LTR46 LTR ERV1 1 453 -7 21 0 0 0 chr3 2818412 2818433 -215218725 + AT_rich Low_complexity Low_complexity 1 21 0 2481 167 24 17 chr3 2818484 2818945 -215218213 + MLT1C LTR MaLR 4 467 0 256 350 131 0 chr3 2818945 2819082 -215218076 + MIR SINE MIR 14 168 -94 221 292 246 8 chr3 2819184 2819314 -215217844 - MIR SINE MIR -87 175 15 252 330 9 9 chr3 2819332 2819438 -215217720 + MIR SINE MIR 153 258 -4 290 88 0 5 chr3 2820222 2820275 -215216883 + L1MB7 LINE L1 6130 6178 0 419 315 66 39 chr3 2820531 2820817 -215216341 + L1ME1 LINE L1 4940 5233 -913 274 303 11 22 chr3 2820841 2820930 -215216228 - L2 LINE L2 -36 3277 3190 921 233 75 58 chr3 2820989 2821469 -215215689 + L1ME1 LINE L1 5301 5788 -2020 1405 232 85 0 chr3 2821471 2821811 -215215347 + Cheshire DNA MER1_type 1 369 -2051 1719 177 3 20 chr3 2821997 2822296 -215214862 - AluJb SINE Alu -18 294 1 239 119 0 0 chr3 2823285 2823324 -215213834 + Alu SINE Alu 2 36 -267 1282 127 0 0 chr3 2823324 2823527 -215213631 + AluSg/x SINE Alu 120 312 0 796 196 98 12 chr3 2824129 2824302 -215212856 - MER5A DNA MER1_type -1 188 1 366 284 155 14 chr3 2824845 2824993 -215212165 - MER5B DNA MER1_type -3 175 7 316 216 119 8 chr3 2825011 2825145 -215212013 - MER5C DNA MER1_type -3 321 173 348 256 161 60 chr3 2825151 2825319 -215211839 + L1ME LINE L1 20 204 -5866 353 275 0 18 chr3 2825467 2825576 -215211582 + L1ME1 LINE L1 6055 6161 -5 27 0 0 0 chr3 2825921 2825948 -215211210 + AT_rich Low_complexity Low_complexity 1 27 0 520 289 7 0 chr3 2825950 2826099 -215211059 - MER5C DNA MER1_type -168 156 7 262 313 83 35 chr3 2826257 2826401 -215210757 + L2 LINE L2 3119 3269 -3 603 235 176 6 chr3 2827344 2827514 -215209644 + MIR SINE MIR 58 256 -6 736 243 86 19 chr3 2829747 2829957 -215207201 + MIR SINE MIR 39 262 0 246 287 122 26 chr3 2830826 2830941 -215206217 + MIR SINE MIR 117 242 -20 1236 227 18 21 chr3 2830981 2831267 -215205891 - MER58B DNA MER1_type -9 332 48 854 140 0 35 chr3 2831676 2831819 -215205339 + FRAM SINE Alu 38 175 -1 551 192 30 0 chr3 2832098 2832197 -215204961 + Tigger3(Golem) DNA MER2_type 2 103 -2926 3883 137 82 0 chr3 2832205 2832242 -215204916 + Tigger3(Golem) DNA MER2_type 2285 2318 -710 405 0 0 0 chr3 2832242 2832287 -215204871 + (TG)n Simple_repeat Simple_repeat 2 46 0 3883 137 82 0 chr3 2832287 2832936 -215204222 + Tigger3(Golem) DNA MER2_type 2318 3027 -1 322 338 25 25 chr3 2832968 2833125 -215204033 + MIR SINE MIR 12 168 -94 470 344 14 19 chr3 2833886 2834101 -215203057 + MIR SINE MIR 46 259 -3 2236 88 10 3 chr3 2834160 2834454 -215202704 - AluSc SINE Alu -13 296 1 297 173 39 0 chr3 2836361 2836413 -215200745 - L2 LINE L2 0 3272 3219 2095 202 52 2 chr3 2836624 2837030 -215200128 - MSTB LTR MaLR 0 426 1 291 288 0 12 chr3 2837527 2837607 -215199551 - L2 LINE L2 -4 3309 3231 * 435 294 183 11 chr3 2837606 2837786 -215199372 + MIR SINE MIR 26 236 -26 1029 122 6 0 chr3 2838953 2839109 -215198049 - L1PA10 LINE L1 -6 6162 6006 268 290 121 16 chr3 2839150 2839274 -215197884 + Charlie8 DNA MER1_type 131 267 -2150 2474 83 0 0 chr3 2839386 2839688 -215197470 + AluSq SINE Alu 1 302 -11 183 80 0 0 chr3 2839746 2839771 -215197387 + (TA)n Simple_repeat Simple_repeat 2 26 0 517 322 102 82 chr3 2839976 2841099 -215196059 + L2 LINE L2 2113 3272 0 2576 157 38 14 chr3 2841477 2841974 -215195184 - L1PA16 LINE L1 -4 6162 5654 406 368 41 59 chr3 2842051 2842543 -215194615 + L3 LINE CR1 766 1248 -329 191 306 134 15 chr3 2842919 2843053 -215194105 + L3 LINE CR1 1401 1550 -27 426 247 111 82 chr3 2843261 2843504 -215193654 + MIR SINE MIR 4 253 -9 240 389 20 20 chr3 2845213 2845362 -215191796 - L3 LINE CR1 -92 1485 1337 283 367 69 9 chr3 2845414 2845632 -215191526 - MIR SINE MIR -1 261 31 282 56 0 0 chr3 2846205 2846241 -215190917 + (TC)n Simple_repeat Simple_repeat 1 36 0 23 0 0 0 chr3 2846805 2846828 -215190330 + AT_rich Low_complexity Low_complexity 1 23 0 2177 95 64 14 chr3 2847056 2847413 -215189745 - THE1C LTR MaLR 0 375 1 205 308 15 0 chr3 2849460 2849525 -215187633 - L2 LINE L2 0 3313 3248 508 255 21 28 chr3 2851560 2851705 -215185453 - MIR SINE MIR -1 261 118 25 31 0 0 chr3 2852012 2852044 -215185114 + AT_rich Low_complexity Low_complexity 1 32 0 367 229 28 18 chr3 2852174 2852283 -215184875 + MER81 DNA DNA 4 113 -1 201 363 20 29 chr3 2852285 2852387 -215184771 + L2 LINE L2 3172 3272 0 429 319 63 95 chr3 2852439 2852602 -215184556 - L2 LINE L2 -341 2973 2806 2307 125 11 6 chr3 2852602 2852955 -215184203 - THE1A LTR MaLR 0 355 1 429 319 63 95 chr3 2852955 2853494 -215183664 - L2 LINE L2 -508 2806 2294 331 252 22 50 chr3 2853575 2853714 -215183444 - L1ME4a LINE L1 0 6121 5987 523 208 104 27 chr3 2853759 2853942 -215183216 + MIR SINE MIR 65 261 -1 370 239 92 0 chr3 2855451 2855581 -215181577 + MLT1K LTR MaLR 381 522 -66 290 235 0 108 chr3 2856587 2856632 -215180526 - MIR SINE MIR -70 192 162 1620 185 56 3 chr3 2856632 2856956 -215180202 - MER2 DNA MER2_type -2 342 2 290 235 0 108 chr3 2856956 2857012 -215180146 - MIR SINE MIR -100 162 102 1966 112 13 49 chr3 2857126 2857430 -215179728 - AluSx SINE Alu -16 296 4 245 286 0 0 chr3 2857762 2857818 -215179340 + MIR SINE MIR 88 143 -65 3382 176 16 3 chr3 2858170 2858807 -215178351 - L1MB1 LINE L1 -1 6167 5523 3911 185 30 19 chr3 2858830 2859363 -215177795 - L1MB4 LINE L1 -37 6143 5596 1691 182 16 0 chr3 2859363 2859670 -215177488 - AluJb SINE Alu 0 312 1 3911 185 30 19 chr3 2859670 2859959 -215177199 - L1MB4 LINE L1 -584 5596 5312 * 5814 142 45 27 chr3 2859949 2862101 -215175057 - L1MA4A LINE L1 -5 7000 4804 10287 199 47 15 chr3 2862126 2865254 -215171904 - L1MA4A LINE L1 -3411 3437 2 1375 246 73 45 chr3 2865254 2865827 -215171331 - L1MB4 LINE L1 -814 5332 4744 390 253 20 33 chr3 2867304 2867454 -215169704 + L1ME1 LINE L1 5996 6143 -23 274 309 125 13 chr3 2867507 2867659 -215169499 + MLT1K LTR MaLR 412 580 -8 482 316 158 0 chr3 2868878 2869087 -215168071 + MIR SINE MIR 11 252 -10 230 154 0 0 chr3 2869054 2869093 -215168065 + L2 LINE L2 3224 3262 -10 * 1654 138 0 0 chr3 2869889 2870120 -215167038 + AluJb SINE Alu 73 303 -9 15469 34 1 0 chr3 2871635 2874270 -215162888 - L1PA3 LINE L1 0 6155 3519 26 50 0 0 chr3 2876494 2876534 -215160624 + AT_rich Low_complexity Low_complexity 1 40 0 471 261 70 23 chr3 2877002 2877265 -215159893 - L1M2 LINE L1 -658 5508 5266 581 274 62 6 chr3 2877269 2877448 -215159710 + MIR SINE MIR 65 253 -9 382 296 21 38 chr3 2877745 2877931 -215159227 - L1M4 LINE L1 -1185 4961 4779 282 261 164 42 chr3 2879152 2879405 -215157753 + L1M4 LINE L1 3927 4148 -1998 189 0 0 0 chr3 2879405 2879426 -215157732 + (TTA)n Simple_repeat Simple_repeat 1 21 0 282 261 164 42 chr3 2879426 2879698 -215157460 + L1M4 LINE L1 4148 4516 -1630 1233 211 53 12 chr3 2880437 2880760 -215156398 - LTR52 LTR ERVL 0 421 86 553 177 9 18 chr3 2880790 2880903 -215156255 - LTR52 LTR ERVL -304 117 6 415 259 122 14 chr3 2881120 2881267 -215155891 + MIR SINE MIR 88 250 -12 309 228 13 0 chr3 2881361 2881440 -215155718 + L1M4 LINE L1 4531 4610 -1536 524 221 21 0 chr3 2881629 2881769 -215155389 + Charlie4 DNA MER1_type 1810 1952 -9 456 224 177 47 chr3 2881821 2882075 -215155083 - MLT1E LTR MaLR -3 590 304 284 126 13 82 chr3 2882146 2882305 -215154853 + (TA)n Simple_repeat Simple_repeat 2 149 0 643 257 87 10 chr3 2882338 2882638 -215154520 - L1ME LINE L1 -554 5610 5288 215 271 14 29 chr3 2882803 2882873 -215154285 - L2 LINE L2 -322 2991 2923 2862 313 96 32 chr3 2883141 2884923 -215152235 - L2 LINE L2 0 3313 1414 206 267 0 80 chr3 2886279 2886354 -215150804 + MIR SINE MIR 78 146 -116 37 69 0 0 chr3 2886360 2886432 -215150726 + AT_rich Low_complexity Low_complexity 1 72 0 2332 100 3 0 chr3 2887155 2887454 -215149704 + AluSg SINE Alu 1 300 -10 266 330 18 28 chr3 2888027 2888245 -215148913 - L1ME LINE L1 -546 5575 5360 1452 108 5 0 chr3 2888659 2888871 -215148287 - L1PB1 LINE L1 -10 6141 5929 213 98 12 98 chr3 2889322 2889404 -215147754 + (TCTCCC)n Simple_repeat Simple_repeat 2 76 0 438 316 29 37 chr3 2889834 2890027 -215147131 - MIR SINE MIR -63 145 3 2118 174 42 3 chr3 2892371 2892755 -215144403 + MER47B DNA MER2_type 20 418 0 1682 144 97 0 chr3 2893584 2893862 -215143296 - AluSx SINE Alu -7 305 1 407 301 30 54 chr3 2894235 2894438 -215142720 + MIR3 SINE MIR 8 205 -3 527 251 163 38 chr3 2894810 2895049 -215142109 + L2 LINE L2 2863 3131 -182 234 150 0 0 chr3 2895053 2895093 -215142065 + (CA)n Simple_repeat Simple_repeat 2 41 0 283 304 7 15 chr3 2895101 2895236 -215141922 + (TA)n Simple_repeat Simple_repeat 1 134 0 434 317 12 30 chr3 2895262 2895429 -215141729 + L2 LINE L2 3147 3310 -3 2581 39 0 0 chr3 2895886 2896191 -215140967 - AluYa5 SINE Alu -6 305 1 363 23 0 0 chr3 2896670 2896714 -215140444 + (CA)n Simple_repeat Simple_repeat 2 45 0 352 266 45 52 chr3 2896775 2896929 -215140229 - MLT1J2 LTR MaLR -23 427 275 2197 108 0 3 chr3 2896955 2897250 -215139908 + AluSc SINE Alu 16 309 0 1789 239 21 23 chr3 2897961 2898479 -215138679 - L1MEc LINE L1 -5853 543 27 313 204 9 102 chr3 2899790 2899807 -215137351 + MLT1K LTR MaLR 202 219 -369 2559 104 64 7 chr3 2899807 2900212 -215136946 + MSTA LTR MaLR 1 428 0 313 204 9 102 chr3 2900212 2900302 -215136856 + MLT1K LTR MaLR 219 299 -289 22 0 0 0 chr3 2900596 2900618 -215136540 + AT_rich Low_complexity Low_complexity 1 22 0 283 157 43 43 chr3 2901247 2901317 -215135841 - L1ME4a LINE L1 -74 6047 5978 312 330 102 19 chr3 2902073 2902288 -215134870 + L1ME LINE L1 5152 5384 -762 311 297 37 67 chr3 2902551 2902887 -215134271 + L1ME LINE L1 5507 5825 -296 1958 158 0 3 chr3 2903024 2903321 -215133837 + AluJb SINE Alu 1 296 -16 851 266 60 43 chr3 2904327 2904695 -215132463 - MLT1K LTR MaLR -6 582 209 249 341 0 12 chr3 2904972 2905057 -215132101 - L2 LINE L2 -224 3048 2965 287 290 80 12 chr3 2905190 2905352 -215131806 + L1MD2 LINE L1 5606 5778 -343 222 311 57 77 chr3 2905808 2906056 -215131102 - L2 LINE L2 -194 3078 2836 184 410 43 0 chr3 2906241 2906358 -215130800 + MIR3 SINE MIR 84 205 -3 2076 138 0 0 chr3 2906827 2907125 -215130033 - AluSx SINE Alu -14 298 1 741 250 74 57 chr3 2908807 2909159 -215127999 + L1MD2 LINE L1 5937 6294 -65 269 330 43 0 chr3 2909730 2909845 -215127313 + L2 LINE L2 3194 3313 0 220 345 60 0 chr3 2910652 2910768 -215126390 + L2 LINE L2 2794 2916 -398 597 203 39 0 chr3 2910805 2910958 -215126200 - L1MB7 LINE L1 -16 6168 6010 556 187 174 0 chr3 2910959 2911114 -215126044 - L1MB7 LINE L1 -354 5830 5649 25 0 0 0 chr3 2911927 2911952 -215125206 + AT_rich Low_complexity Low_complexity 1 25 0 1907 151 20 7 chr3 2911961 2912260 -215124898 + AluJb SINE Alu 2 304 -8 213 271 17 0 chr3 2912326 2912385 -215124773 + (TG)n Simple_repeat Simple_repeat 2 61 0 4311 180 42 13 chr3 2912646 2912855 -215124303 - L1MB3 LINE L1 -8 6175 5974 1737 157 52 0 chr3 2912855 2913141 -215124017 - AluJb SINE Alu -10 302 2 4311 180 42 13 chr3 2913141 2913885 -215123273 - L1MB3 LINE L1 -209 5974 5188 250 264 11 66 chr3 2913985 2914076 -215123082 - L2 LINE L2 -1 3312 3227 252 385 24 12 chr3 2914133 2914299 -215122859 - MIR SINE MIR -84 178 11 1366 233 41 41 chr3 2915010 2915400 -215121758 + MLT1B LTR MaLR 1 390 0 300 117 50 0 chr3 2915675 2915735 -215121423 - L1MB8 LINE L1 -1 6177 6115 1498 163 14 3 chr3 2915874 2916156 -215121002 - L1MB7 LINE L1 -91 6093 5809 1593 223 119 10 chr3 2916156 2916636 -215120522 - MER34 LTR ERV1 0 542 11 1089 170 21 30 chr3 2916644 2916879 -215120279 - L1MB7 LINE L1 -365 5819 5587 539 208 60 140 chr3 2916954 2917219 -215119939 + L2 LINE L2 3055 3298 -15 447 336 61 42 chr3 2917518 2917943 -215119215 - MLT1K LTR MaLR -2 586 154 288 304 6 17 chr3 2920711 2920848 -215116310 + CT-rich Low_complexity Low_complexity 1 135 0 423 304 33 72 chr3 2921521 2921797 -215115361 + MER102b DNA MER1_type 43 307 -34 180 333 21 0 chr3 2921900 2921948 -215115210 + L2 LINE L2 3139 3187 -85 230 325 12 0 chr3 2922485 2922568 -215114590 - MIR3 SINE MIR -7 201 118 463 250 38 12 chr3 2922578 2922738 -215114420 + LTR16B LTR ERVL 16 179 -285 674 263 6 0 chr3 2922791 2922970 -215114188 + LTR16B LTR ERVL 285 464 0 338 293 22 50 chr3 2922982 2923163 -215113995 - L2 LINE L2 -240 3032 2857 305 316 0 35 chr3 2923186 2923300 -215113858 - MIR3 SINE MIR -97 111 2 200 313 45 15 chr3 2923504 2923571 -215113587 + MIR SINE MIR 8 76 -186 470 300 123 43 chr3 2923575 2924119 -215113039 - L2 LINE L2 -243 3029 2448 185 270 45 11 chr3 2924647 2924736 -215112422 - L2 LINE L2 -104 3209 3118 1820 158 0 39 chr3 2925132 2925442 -215111716 - AluJb SINE Alu -14 298 1 229 293 98 12 chr3 2925547 2925629 -215111529 + L2 LINE L2 3143 3231 -41 335 264 14 0 chr3 2925809 2925881 -215111277 - L2 LINE L2 -2 3270 3198 528 231 67 0 chr3 2925974 2926108 -215111050 + Tigger6 DNA MER2_type 2 144 -1453 2348 100 0 13 chr3 2926135 2926429 -215110729 + AluSx SINE Alu 1 292 -20 189 0 0 0 chr3 2926429 2926450 -215110708 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 2348 100 0 13 chr3 2926450 2926466 -215110692 + AluSx SINE Alu 292 307 -5 348 196 155 0 chr3 2926466 2926563 -215110595 + Tigger6 DNA MER2_type 1486 1597 0 2288 249 54 32 chr3 2926586 2927429 -215109729 - L1ME3A LINE L1 -5 6165 5299 4874 121 7 5 chr3 2927429 2928173 -215108985 + L1PA13 LINE L1 5408 6152 -11 2288 249 54 32 chr3 2928173 2928188 -215108970 - L1ME3A LINE L1 -871 5299 5286 229 283 62 7 chr3 2928182 2928327 -215108831 - L1M4 LINE L1 -748 5467 5315 * 1245 282 88 49 chr3 2928408 2928698 -215108460 - L1MEc LINE L1 -3180 3035 2758 186 43 0 0 chr3 2928698 2928721 -215108437 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1245 282 88 49 chr3 2928721 2928732 -215108426 - L1MEc LINE L1 -3457 2758 2749 1963 142 28 0 chr3 2928732 2929014 -215108144 + AluSx SINE Alu 1 290 -22 1245 282 88 49 chr3 2929014 2929598 -215107560 - L1MEc LINE L1 -3466 2749 2189 21 36 0 0 chr3 2929598 2929626 -215107532 + AT_rich Low_complexity Low_complexity 1 28 0 1245 282 88 49 chr3 2929626 2930650 -215106508 - L1MEc LINE L1 -4026 2189 1056 2140 109 10 0 chr3 2930650 2930943 -215106215 - AluSx SINE Alu -16 296 1 1245 282 88 49 chr3 2930943 2931029 -215106129 - L1MEc LINE L1 -5159 1056 975 519 308 52 69 chr3 2931697 2932045 -215105113 + MLT1H1-int LTR MaLR 1030 1371 0 1221 276 50 50 chr3 2932064 2932589 -215104569 + MLT1H1 LTR MaLR 25 549 -6 208 245 20 20 chr3 2932594 2932643 -215104515 + MER5A DNA MER1_type 110 158 -31 345 277 121 40 chr3 2934554 2934702 -215102456 + MIR3 SINE MIR 7 165 -43 3087 170 5 9 chr3 2934931 2935621 -215101537 - L1MA5 LINE L1 -440 5860 5174 1654 177 17 9 chr3 2935621 2935959 -215101199 + L1MA5 LINE L1 5943 6295 -5 320 340 20 0 chr3 2936270 2936370 -215100788 + L2 LINE L2 3171 3272 -41 3168 121 20 69 chr3 2936793 2937347 -215099811 - MER1A DNA MER1_type 0 527 1 230 253 96 0 chr3 2937449 2937532 -215099626 - L1ME LINE L1 -469 5652 5562 6415 159 12 8 chr3 2937625 2939768 -215097390 - L1PB1 LINE L1 -2 6865 4719 4385 228 18 5 chr3 2939775 2940293 -215096865 - L1PB1 LINE L1 -2460 4402 3892 216 0 0 0 chr3 2940293 2940317 -215096841 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 4385 228 18 5 chr3 2940317 2940909 -215096249 - L1PB1 LINE L1 -2970 3892 3278 * 29396 108 48 44 chr3 2940889 2947007 -215090151 - L1PA7 LINE L1 0 6154 12 2208 165 18 12 chr3 2947018 2947512 -215089646 - L1PB1 LINE L1 -3553 3309 2803 8353 114 60 15 chr3 2947522 2949886 -215087272 - L1PB1 LINE L1 -4249 2614 1 460 352 73 40 chr3 2949992 2950319 -215086839 - L1MEd LINE L1 -5324 795 458 300 318 74 7 chr3 2950937 2951085 -215086073 - L1M LINE L1 -2566 5429 5272 463 198 69 0 chr3 2951088 2951189 -215085969 - L1MA9 LINE L1 -38 6274 6167 * 1110 172 0 22 chr3 2951188 2951415 -215085743 - L1 LINE L1 -814 5332 5111 2322 251 53 27 chr3 2951426 2952797 -215084361 - L1 LINE L1 -3322 4243 2831 6520 267 88 29 chr3 2952812 2954963 -215082195 + L1PA13 LINE L1 2 2278 -4509 369 237 11 0 chr3 2954989 2955082 -215082076 + L1PA15 LINE L1 1565 1658 -5129 257 231 0 0 chr3 2955097 2955149 -215082009 - L1PA15-16 LINE L1 -4433 2416 2365 15449 200 14 16 chr3 2955186 2956338 -215080820 + L1PA15 LINE L1 2315 3468 -3348 1612 128 4 4 chr3 2956338 2956572 -215080586 + AluSc SINE Alu 44 277 -32 198 0 0 0 chr3 2956573 2956595 -215080563 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 15449 200 14 16 chr3 2956595 2959951 -215077207 + L1PA15 LINE L1 3467 6815 -1 1769 225 52 85 chr3 2959995 2960863 -215076295 - L1M2 LINE L1 -4411 2757 1915 231 270 90 10 chr3 2961382 2961482 -215075676 - L1M2 LINE L1 -5378 1790 1683 637 324 51 19 chr3 2961751 2962066 -215075092 - L1M2 LINE L1 -5806 1292 968 3424 283 97 45 chr3 2962228 2964171 -215072987 - L2 LINE L2 0 3313 1276 2199 106 3 0 chr3 2964583 2964876 -215072282 - AluSg SINE Alu -16 294 1 2687 108 10 0 chr3 2965407 2965807 -215071351 + L1PA14 LINE L1 5757 6160 -1 480 310 28 5 chr3 2966345 2966561 -215070597 - L1M4 LINE L1 -2196 3950 3730 24 0 0 0 chr3 2967166 2967190 -215069968 + AT_rich Low_complexity Low_complexity 1 24 0 414 343 164 21 chr3 2969150 2969523 -215067635 - L2 LINE L2 -2 3270 2845 184 246 33 16 chr3 2969549 2969610 -215067548 - L2 LINE L2 -1034 2280 2219 231 188 0 0 chr3 2969662 2969710 -215067448 + (CA)n Simple_repeat Simple_repeat 1 48 0 2482 46 3 0 chr3 2969723 2970027 -215067131 - AluY SINE Alu -6 305 1 348 157 22 101 chr3 2972194 2972283 -215064875 - L1ME3A LINE L1 -12 6158 6077 1111 282 92 5 chr3 2972387 2972788 -215064370 - L1ME3A LINE L1 0 6170 5735 1769 109 12 12 chr3 2973197 2973453 -215063705 - AluSg SINE Alu -18 292 37 2334 98 41 120 chr3 2975142 2975602 -215061556 + MSTC LTR MaLR 5 428 0 251 281 0 0 chr3 2976043 2976107 -215061051 - MIR SINE MIR -115 147 84 540 226 0 0 chr3 2976117 2976223 -215060935 + L2 LINE L2 3189 3294 -19 294 297 39 42 chr3 2977151 2977321 -215059837 + MIR SINE MIR 21 185 -69 417 268 149 30 chr3 2977604 2977772 -215059386 - MIR SINE MIR -50 212 25 335 270 130 55 chr3 2977827 2978027 -215059131 - L1ME3A LINE L1 0 6153 5939 268 204 62 97 chr3 2978067 2978180 -215058978 - L1ME3A LINE L1 -208 5945 5837 1297 236 70 90 chr3 2978186 2978971 -215058187 - L1ME3A LINE L1 -922 5207 4439 527 287 129 30 chr3 2979201 2980112 -215057046 - L1MEd LINE L1 -4671 1639 593 273 246 42 34 chr3 2980867 2980985 -215056173 - MLT1K LTR MaLR -95 493 375 502 54 27 0 chr3 2982812 2982886 -215054272 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 350 228 232 0 chr3 2983300 2983407 -215053751 - MER5A DNA MER1_type 0 178 60 574 55 104 0 chr3 2983407 2983570 -215053588 + (TA)n Simple_repeat Simple_repeat 1 180 0 430 49 110 18 chr3 2983581 2983745 -215053413 + (TA)n Simple_repeat Simple_repeat 2 180 0 354 173 74 0 chr3 2983770 2983932 -215053226 + (TA)n Simple_repeat Simple_repeat 1 174 0 585 152 53 0 chr3 2983946 2984117 -215053041 + (TA)n Simple_repeat Simple_repeat 1 180 0 2660 87 5 0 chr3 2984121 2984489 -215052669 + L1PB1 LINE L1 5782 6151 0 21 36 0 0 chr3 2984489 2984517 -215052641 + AT_rich Low_complexity Low_complexity 1 28 0 312 274 11 11 chr3 2984524 2984619 -215052539 - L2 LINE L2 -225 3088 2994 337 248 187 11 chr3 2984842 2985092 -215052066 + L1MC4a LINE L1 5602 5899 -224 210 326 167 0 chr3 2985099 2985320 -215051838 - L2 LINE L2 -1616 1698 1441 263 274 43 26 chr3 2985504 2985621 -215051537 + MIR SINE MIR 85 203 -59 259 243 57 86 chr3 2985676 2985816 -215051342 + MIR SINE MIR 124 259 -3 213 261 29 14 chr3 2985984 2986053 -215051105 - L3 LINE CR1 -5 1572 1503 332 264 35 0 chr3 2986581 2986668 -215050490 - MIR SINE MIR -7 255 166 195 129 0 0 chr3 2986687 2986718 -215050440 + (TG)n Simple_repeat Simple_repeat 2 32 0 302 294 18 9 chr3 2986780 2986889 -215050269 + MIR3 SINE MIR 97 206 -2 345 47 0 0 chr3 2986978 2987021 -215050137 + (CA)n Simple_repeat Simple_repeat 2 44 0 1487 238 3 3 chr3 2987051 2987333 -215049825 - AluJo SINE Alu -27 285 4 48 53 0 0 chr3 2988191 2988267 -215048891 + AT_rich Low_complexity Low_complexity 1 76 0 204 297 16 31 chr3 2989162 2989226 -215047932 + MIR SINE MIR 33 95 -113 709 289 24 45 chr3 2989258 2989504 -215047654 - MIR SINE MIR -7 255 15 258 350 36 7 chr3 2991417 2991555 -215045603 + MIR SINE MIR 21 165 -65 297 135 0 0 chr3 2991608 2991660 -215045498 + (TC)n Simple_repeat Simple_repeat 1 52 0 464 250 0 9 chr3 2992186 2992294 -215044864 + MLT1F LTR MaLR 88 194 -348 415 287 61 24 chr3 2993514 2993678 -215043480 - MIR SINE MIR -9 253 84 362 250 73 62 chr3 2994280 2994472 -215042686 - MIR SINE MIR -55 207 14 207 254 45 0 chr3 2995339 2995406 -215041752 - MIR SINE MIR -11 251 182 27 0 0 0 chr3 2995593 2995620 -215041538 + AT_rich Low_complexity Low_complexity 1 27 0 1444 246 73 39 chr3 2996123 2996660 -215040498 - MLT1K LTR MaLR -6 582 28 465 19 0 0 chr3 2997574 2997628 -215039530 + (TG)n Simple_repeat Simple_repeat 1 54 0 423 275 35 69 chr3 2998149 2998327 -215038831 - MIR SINE MIR -50 158 20 2049 178 8 11 chr3 2998839 2999205 -215037953 - MLT1A1 LTR MaLR 0 365 1 6061 196 88 83 chr3 2999205 3000510 -215036648 - MLT1A1-int LTR MaLR 0 1735 417 1453 206 16 23 chr3 3000510 3000816 -215036342 + AluJo SINE Alu 1 304 -8 6061 196 88 83 chr3 3000816 3001236 -215035922 - MLT1A1-int LTR MaLR -1318 417 1 1627 189 13 0 chr3 3001236 3001542 -215035616 - MLT1A1 LTR MaLR 0 365 56 654 152 0 118 chr3 3001537 3001715 -215035443 - MLT1E2 LTR MaLR -469 157 1 * 875 293 57 6 chr3 3001716 3002047 -215035111 - L2 LINE L2 -1099 2215 1868 250 286 60 8 chr3 3002170 3002244 -215034914 + L2 LINE L2 1739 1808 -1506 2592 52 0 0 chr3 3002244 3002550 -215034608 - AluY SINE Alu -5 306 1 250 286 60 8 chr3 3002550 3002608 -215034550 + L2 LINE L2 1808 1878 -1436 1779 200 113 20 chr3 3003564 3003728 -215033430 + L1MD3 LINE L1 4958 5105 -1041 297 0 0 0 chr3 3003728 3003761 -215033397 + (TG)n Simple_repeat Simple_repeat 2 34 0 1779 200 113 20 chr3 3003761 3004328 -215032830 + L1MD3 LINE L1 5105 5326 -820 1581 161 51 46 chr3 3004328 3004701 -215032457 - THE1C LTR MaLR 0 375 1 1779 200 113 20 chr3 3004701 3004788 -215032370 + L1MD3 LINE L1 5326 5403 -743 1090 189 43 13 chr3 3004782 3005015 -215032143 + L1ME1 LINE L1 5923 6162 -4 * 288 185 19 56 chr3 3005217 3005325 -215031833 + Charlie8 DNA MER1_type 67 170 -2247 1696 188 0 7 chr3 3005907 3006199 -215030959 + AluJo SINE Alu 1 290 -22 1889 185 33 31 chr3 3006689 3007245 -215029913 - MLT2A2 LTR ERVL 0 554 1 252 59 0 0 chr3 3007299 3007333 -215029825 + (TG)n Simple_repeat Simple_repeat 2 35 0 729 157 9 0 chr3 3009249 3009364 -215027794 + FLAM_C SINE Alu 3 118 -15 202 288 61 15 chr3 3009466 3009532 -215027626 + MIR3 SINE MIR 115 183 -25 1345 315 58 57 chr3 3009724 3010831 -215026327 - L2 LINE L2 -1 3312 2201 307 105 18 0 chr3 3010938 3010995 -215026163 - L1MB2 LINE L1 0 6171 6114 756 174 7 0 chr3 3011066 3011215 -215025943 - L1MB3 LINE L1 0 6183 6034 1788 166 12 0 chr3 3011258 3011584 -215025574 - L1MB2 LINE L1 -131 6040 5711 2281 121 0 7 chr3 3014149 3014455 -215022703 + AluSx SINE Alu 2 305 -7 1796 257 41 58 chr3 3014574 3014924 -215022234 + L1ME3A LINE L1 5175 5530 -640 1849 141 37 3 chr3 3014924 3015251 -215021907 + MER44D DNA MER2_type 1 608 -1 1796 257 41 58 chr3 3015251 3015502 -215021656 + L1ME3A LINE L1 5530 5784 -386 189 94 0 0 chr3 3015502 3015534 -215021624 + (CTTA)n Simple_repeat Simple_repeat 2 33 0 216 0 0 0 chr3 3015540 3015564 -215021594 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2002 121 0 7 chr3 3015566 3015846 -215021312 - AluSq SINE Alu -35 278 1 1796 257 41 58 chr3 3015846 3016137 -215021021 + L1ME3A LINE L1 5790 6060 -110 844 196 22 27 chr3 3016933 3017117 -215020041 + MER5A DNA MER1_type 2 184 -5 357 279 35 87 chr3 3017288 3017414 -215019744 - MER5B DNA MER1_type -12 166 50 1706 208 19 6 chr3 3017414 3017774 -215019384 - MLT1A1 LTR MaLR 0 365 1 357 279 35 87 chr3 3017774 3017819 -215019339 - MER5B DNA MER1_type -128 50 4 249 299 149 65 chr3 3018121 3018322 -215018836 + MIR SINE MIR 28 245 -17 250 281 26 61 chr3 3018378 3018492 -215018666 + MIR SINE MIR 31 140 -122 1652 173 141 3 chr3 3018635 3019011 -215018147 - MSTA LTR MaLR 0 428 1 193 274 55 14 chr3 3020140 3020213 -215016945 - L3 LINE CR1 -35 1542 1467 233 274 60 24 chr3 3020627 3020711 -215016447 - L3 LINE CR1 -133 1444 1358 693 293 18 26 chr3 3020735 3020964 -215016194 + MIR SINE MIR 7 233 -29 227 381 44 17 chr3 3021006 3021187 -215015971 - L3 LINE CR1 -238 1339 1154 2599 66 43 3 chr3 3021780 3022130 -215015028 + THE1B LTR MaLR 1 364 0 292 307 88 0 chr3 3022348 3022485 -215014673 - L3 LINE CR1 -713 864 716 21 0 0 0 chr3 3023107 3023128 -215014030 + AT_rich Low_complexity Low_complexity 1 21 0 207 322 0 46 chr3 3023697 3023784 -215013374 - MIR SINE MIR -50 212 130 726 184 87 66 chr3 3024228 3024424 -215012734 + MER63A DNA MER1_type 9 208 -2 847 294 38 55 chr3 3024439 3024786 -215012372 + L2 LINE L2 2289 2629 -685 216 0 0 0 chr3 3024831 3024855 -215012303 + (A)n Simple_repeat Simple_repeat 1 24 0 738 291 121 28 chr3 3024856 3025220 -215011938 - MLT1J2 LTR MaLR -38 412 15 1097 249 23 101 chr3 3025235 3026003 -215011155 + L2 LINE L2 2624 3313 0 395 293 94 17 chr3 3026147 3026232 -215010926 - MIR SINE MIR -38 224 147 1674 167 0 61 chr3 3026232 3026383 -215010775 + AluJb SINE Alu 1 125 -187 2188 99 0 0 chr3 3026383 3026655 -215010503 + AluSx SINE Alu 24 295 -17 1674 167 0 61 chr3 3026655 3026814 -215010344 + AluJb SINE Alu 125 292 -20 395 293 94 17 chr3 3026814 3026909 -215010249 - MIR SINE MIR -115 147 30 355 281 50 41 chr3 3026989 3027110 -215010048 + MIR3 SINE MIR 70 191 -17 282 360 26 0 chr3 3027375 3027489 -215009669 + MIR SINE MIR 102 218 -44 22 56 0 0 chr3 3027875 3027911 -215009247 + AT_rich Low_complexity Low_complexity 1 36 0 270 254 0 0 chr3 3028280 3028390 -215008768 + (TGGA)n Simple_repeat Simple_repeat 3 112 0 378 338 8 8 chr3 3028426 3028559 -215008599 + MIR3 SINE MIR 11 143 -65 2280 111 3 0 chr3 3029075 3029373 -215007785 + AluSx SINE Alu 1 299 -13 333 322 0 0 chr3 3029383 3029498 -215007660 + MIR SINE MIR 142 256 -6 1910 151 18 0 chr3 3029521 3029800 -215007358 - AluSx SINE Alu -10 302 19 1704 212 51 22 chr3 3029805 3030253 -215006905 - MLT1C LTR MaLR -1 466 6 275 246 282 0 chr3 3031445 3031555 -215005603 - MER5A DNA MER1_type 0 189 49 1754 206 80 49 chr3 3031639 3032128 -215005030 - MLT1D LTR MaLR 0 505 2 208 200 22 0 chr3 3032611 3032656 -215004502 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 246 174 43 33 chr3 3033831 3033923 -215003235 + (TAGA)n Simple_repeat Simple_repeat 3 95 0 218 277 0 0 chr3 3033923 3033970 -215003188 - L2 LINE L2 -13 3300 3254 * 410 279 202 6 chr3 3033940 3034123 -215003035 - MIR SINE MIR -24 238 20 437 309 210 22 chr3 3034125 3034449 -215002709 - L2 LINE L2 -1 3271 2887 25 0 0 0 chr3 3034587 3034612 -215002546 + AT_rich Low_complexity Low_complexity 1 25 0 2096 131 76 15 chr3 3034764 3035107 -215002051 + THE1B LTR MaLR 1 364 0 11187 86 6 3 chr3 3035107 3036672 -215000486 + THE1B-int LTR MaLR 1 1571 -9 2066 126 82 15 chr3 3036677 3037018 -215000140 + THE1B LTR MaLR 1 364 0 1422 186 67 25 chr3 3037254 3037581 -214999577 + MER58B DNA MER1_type 1 341 0 244 239 28 42 chr3 3038784 3038855 -214998303 + MIR SINE MIR 77 146 -62 433 206 167 39 chr3 3038927 3039107 -214998051 - MER113 DNA MER1_type? -45 476 274 507 179 32 0 chr3 3039160 3039283 -214997875 + MER53 DNA DNA 63 189 0 325 254 51 17 chr3 3039376 3039510 -214997648 + MLT1H LTR MaLR 19 193 -244 45 19 0 0 chr3 3039775 3039827 -214997331 + AT_rich Low_complexity Low_complexity 1 52 0 199 192 19 58 chr3 3039896 3039948 -214997210 + MIR3 SINE MIR 145 194 -14 320 221 78 58 chr3 3040040 3040143 -214997015 + MIR SINE MIR 70 171 -63 782 131 0 22 chr3 3040144 3040281 -214996877 + L1MB8 LINE L1 5560 5693 -598 611 195 131 64 chr3 3041087 3041323 -214995835 + L1MB8 LINE L1 5925 6176 -2 569 312 112 33 chr3 3041346 3041766 -214995392 + L1M4 LINE L1 3310 3762 -2384 937 196 12 12 chr3 3041777 3041945 -214995213 + AluJo SINE Alu 121 288 -24 1754 169 3 14 chr3 3042419 3042740 -214994418 - AluJb SINE Alu 0 312 2 872 185 29 62 chr3 3043283 3043526 -214993632 - MER106A DNA MER1_type -1 235 1 26 30 0 0 chr3 3043715 3043748 -214993410 + AT_rich Low_complexity Low_complexity 1 33 0 323 211 0 0 chr3 3044057 3044114 -214993044 - L2 LINE L2 0 3272 3216 3248 159 67 20 chr3 3044889 3045530 -214991628 + LTR51 LTR ERV1 1 671 0 283 272 110 73 chr3 3045708 3045762 -214991396 + MIR3 SINE MIR 34 85 -123 780 239 159 44 chr3 3045762 3046126 -214991032 - MLT1I LTR MaLR -1 408 3 283 272 110 73 chr3 3046126 3046207 -214990951 + MIR3 SINE MIR 85 174 -34 1984 180 64 10 chr3 3046430 3046836 -214990322 + MSTB1 LTR MaLR 5 432 0 1056 208 5 18 chr3 3047964 3048185 -214988973 - MER20 DNA MER1_type 0 219 2 1268 171 33 12 chr3 3049370 3049610 -214987548 + MIR SINE MIR 11 255 -7 238 259 83 0 chr3 3049686 3049794 -214987364 - MER53 DNA DNA 0 189 73 205 325 98 16 chr3 3050848 3050971 -214986187 - MIR3 SINE MIR -3 205 73 762 329 76 9 chr3 3051263 3051433 -214985725 - MLT1K LTR MaLR -8 580 423 2132 122 73 14 chr3 3051433 3051787 -214985371 - THE1C LTR MaLR 0 375 1 762 329 76 9 chr3 3051787 3052066 -214985092 - MLT1K LTR MaLR -165 423 101 1732 182 0 20 chr3 3052099 3052401 -214984757 + AluJo SINE Alu 1 296 -16 600 308 195 11 chr3 3052878 3053242 -214983916 - L2 LINE L2 -2 3311 2881 577 234 105 0 chr3 3053304 3053428 -214983730 + FRAM SINE Alu 1 137 -39 542 348 42 42 chr3 3053436 3053562 -214983596 - L2 LINE L2 -537 2777 2652 978 197 16 0 chr3 3053562 3053745 -214983413 + MER5A DNA MER1_type 1 186 -3 542 348 42 42 chr3 3053745 3053931 -214983227 - L2 LINE L2 -661 2653 2465 324 267 69 15 chr3 3054043 3054174 -214982984 + MIR SINE MIR 35 172 -90 300 289 195 27 chr3 3055322 3055471 -214981687 + L3 LINE CR1 277 450 -1127 287 200 27 53 chr3 3056030 3056105 -214981053 + MER81 DNA DNA 6 78 -36 194 250 0 0 chr3 3056112 3056156 -214981002 + L3 LINE CR1 1140 1183 -394 679 286 54 17 chr3 3056200 3056441 -214980717 - MIR SINE MIR 0 262 13 260 244 154 0 chr3 3056443 3056566 -214980592 + L3 LINE CR1 1221 1362 -215 11735 207 24 17 chr3 3057908 3061817 -214975341 - L1PA16 LINE L1 -2 6164 2234 3552 110 70 24 chr3 3061970 3063048 -214974110 - MER11A LTR ERVK -4 1232 1 1258 245 28 3 chr3 3063638 3063965 -214973193 + MER58B DNA MER1_type 1 335 -6 1087 175 0 0 chr3 3064492 3064658 -214972500 - FRAM SINE Alu -10 166 1 610 261 133 11 chr3 3064774 3064933 -214972225 + MIR SINE MIR 8 195 -67 279 0 0 0 chr3 3064933 3064964 -214972194 + (TG)n Simple_repeat Simple_repeat 2 32 0 610 261 133 11 chr3 3064964 3064992 -214972166 + MIR SINE MIR 195 218 -44 398 35 0 18 chr3 3065010 3065067 -214972091 + (TA)n Simple_repeat Simple_repeat 2 57 0 203 328 0 0 chr3 3065093 3065160 -214971998 + MIR SINE MIR 196 262 0 508 258 89 72 chr3 3065283 3065708 -214971450 + MLT1H LTR MaLR 3 592 -1 1631 147 27 17 chr3 3065730 3066023 -214971135 - MSTA LTR MaLR 0 428 133 478 269 304 0 chr3 3066753 3066924 -214970234 + MIR SINE MIR 39 261 -1 353 253 111 25 chr3 3067043 3067363 -214969795 + MLT1K LTR MaLR 158 553 -35 22 0 0 0 chr3 3067485 3067507 -214969651 + AT_rich Low_complexity Low_complexity 1 22 0 364 261 17 25 chr3 3068126 3068245 -214968913 + MLT1K LTR MaLR 132 249 -339 216 0 0 0 chr3 3068257 3068281 -214968877 + (T)n Simple_repeat Simple_repeat 1 24 0 237 258 45 11 chr3 3068543 3068632 -214968526 + L1MCa LINE L1 19 110 -6316 818 266 31 35 chr3 3068653 3068943 -214968215 + L1MCa LINE L1 139 427 -5480 1030 228 47 37 chr3 3069022 3069320 -214967838 + L1MCa LINE L1 417 717 -5190 1226 90 6 0 chr3 3069350 3069528 -214967630 + (GAA)n Simple_repeat Simple_repeat 2 180 0 281 87 0 22 chr3 3069541 3069587 -214967571 + (GAAA)n Simple_repeat Simple_repeat 3 47 0 2807 215 78 18 chr3 3069589 3070697 -214966461 + L1MCa LINE L1 713 1992 -4434 986 172 0 0 chr3 3070695 3070881 -214966277 + L1MA9 LINE L1 5597 5782 -552 * 260 136 0 0 chr3 3070880 3070924 -214966234 - L1M4 LINE L1 -410 5774 5731 * 1514 226 30 37 chr3 3070978 3071469 -214965689 + L1MA9 LINE L1 5784 6271 -41 429 247 64 16 chr3 3071488 3071674 -214965484 + L1MCa LINE L1 2068 2207 -4219 * 635 171 99 13 chr3 3071667 3071819 -214965339 + L1MB3 LINE L1 6011 6175 -8 271 95 0 0 chr3 3071830 3071872 -214965286 + L1MCa LINE L1 2190 2231 -4195 1810 108 0 4 chr3 3071896 3072136 -214965022 + AluSc SINE Alu 1 239 -70 354 325 117 13 chr3 3072168 3072399 -214964759 - MIR SINE MIR 0 262 8 222 278 19 0 chr3 3072428 3072482 -214964676 - L2 LINE L2 -22 3291 3237 2328 115 7 0 chr3 3072618 3072923 -214964235 - AluSx SINE Alu -5 307 1 289 349 88 17 chr3 3074399 3074637 -214962521 + L2 LINE L2 1865 2119 -1195 736 259 70 5 chr3 3074809 3074994 -214962164 - MIR SINE MIR -37 225 29 3411 191 43 32 chr3 3075201 3075783 -214961375 + L1MB8 LINE L1 5309 5906 -272 1951 177 67 98 chr3 3075783 3076466 -214960692 - MER4A LTR ERV1 0 664 3 3411 191 43 32 chr3 3076466 3076738 -214960420 + L1MB8 LINE L1 5906 6173 -5 665 283 70 86 chr3 3077157 3077747 -214959411 - MLT1K LTR MaLR 0 588 9 968 204 75 45 chr3 3079430 3079763 -214957395 - MER2 DNA MER2_type -1 343 1 252 363 189 19 chr3 3079797 3080163 -214956995 + L2 LINE L2 2543 2970 -344 324 294 167 11 chr3 3080538 3080718 -214956440 - MLT1J1 LTR MaLR -171 275 68 222 37 0 0 chr3 3080897 3080924 -214956234 + (TA)n Simple_repeat Simple_repeat 1 27 0 2473 162 7 20 chr3 3080936 3081375 -214955783 + Tigger2a DNA MER2_type 2 434 0 192 258 45 15 chr3 3081857 3081923 -214955235 + L2 LINE L2 3245 3312 -1 2251 114 0 0 chr3 3082835 3083125 -214954033 + AluSx SINE Alu 1 290 -22 1888 102 35 0 chr3 3083536 3083791 -214953367 - AluSq SINE Alu -1 312 49 227 245 0 0 chr3 3084701 3084754 -214952404 + L2 LINE L2 3257 3309 -4 1733 166 3 19 chr3 3084876 3085189 -214951969 - AluJb SINE Alu 0 312 5 695 190 29 36 chr3 3085304 3085441 -214951717 + AluJo SINE Alu 1 136 -176 3937 210 53 38 chr3 3085444 3086547 -214950611 - L1MD1 LINE L1 -2 7805 6101 627 288 101 5 chr3 3087115 3087334 -214949824 + MIR SINE MIR 23 262 0 4269 129 29 7 chr3 3087336 3087956 -214949202 - MER41B LTR ERV1 0 635 2 384 353 0 0 chr3 3088375 3088497 -214948661 - MIR3 SINE MIR -15 193 72 329 286 30 75 chr3 3088811 3088944 -214948214 - L2 LINE L2 -203 3069 2943 368 139 241 13 chr3 3089520 3089599 -214947559 - Tigger2 DNA MER2_type -349 2369 2273 233 254 30 0 chr3 3089589 3089656 -214947502 - Tigger2 DNA MER2_type -2649 69 1 * 333 325 42 6 chr3 3090163 3090329 -214946829 - MIR3 SINE MIR -7 201 30 293 224 30 0 chr3 3090588 3090655 -214946503 + Tigger2 DNA MER2_type 1 69 -2649 * 1929 117 78 3 chr3 3090645 3090952 -214946206 + Tigger2 DNA MER2_type 2273 2602 -116 614 240 0 0 chr3 3091160 3091281 -214945877 - MER45A DNA AcHobo -1 177 57 * 630 183 0 48 chr3 3091278 3091404 -214945754 + Tigger2 DNA MER2_type 2599 2718 0 2286 94 3 0 chr3 3091996 3092294 -214944864 + AluSx SINE Alu 1 299 -13 785 209 120 0 chr3 3093873 3094031 -214943127 - MER45A DNA AcHobo 0 178 2 182 152 61 0 chr3 3094206 3094239 -214942919 - MER5B DNA MER1_type -133 45 11 225 332 158 21 chr3 3094296 3094486 -214942672 - L3 LINE CR1 -353 1224 1009 1915 164 0 3 chr3 3095554 3095853 -214941305 + AluJo SINE Alu 1 298 -14 1788 192 69 38 chr3 3097079 3097487 -214939671 + L1ME1 LINE L1 4902 5341 -825 2198 124 7 0 chr3 3097487 3097794 -214939364 + AluSx SINE Alu 1 309 -3 1788 192 69 38 chr3 3097794 3097971 -214939187 + L1ME1 LINE L1 5341 5511 -655 512 169 24 0 chr3 3097975 3098058 -214939100 + MLT1D LTR MaLR 4 88 -417 1174 151 58 92 chr3 3098101 3098435 -214938723 - AluJb SINE Alu 0 324 1 1308 239 84 16 chr3 3098447 3098815 -214938343 + MLT1D LTR MaLR 113 505 0 603 228 8 0 chr3 3098825 3098952 -214938206 + L1ME1 LINE L1 5518 5645 -521 1939 172 42 15 chr3 3098996 3099398 -214937760 + L1ME1 LINE L1 5747 6159 -7 477 40 40 0 chr3 3099406 3099482 -214937676 + (TAGA)n Simple_repeat Simple_repeat 3 81 0 1906 143 0 13 chr3 3099640 3099940 -214937218 + AluSx SINE Alu 1 296 -16 187 235 0 0 chr3 3099940 3099974 -214937184 - MIR3 SINE MIR -24 184 151 2164 115 81 32 chr3 3100034 3100381 -214936777 + THE1B LTR MaLR 1 364 0 5310 62 1 3 chr3 3100381 3101039 -214936119 + THE1B-int LTR MaLR 1 657 -923 1448 155 4 52 chr3 3101039 3101291 -214935867 + THE1B LTR MaLR 125 364 0 285 264 110 110 chr3 3101292 3101519 -214935639 - MIR SINE MIR -32 230 4 456 240 108 16 chr3 3101678 3101807 -214935351 - MIR3 SINE MIR -48 160 20 1299 201 0 76 chr3 3102008 3102216 -214934942 + AluJo SINE Alu 1 180 -132 2139 173 12 6 chr3 3102216 3102557 -214934601 + MER61A LTR ERV1 1 343 0 1299 201 0 76 chr3 3102557 3102651 -214934507 + AluJo SINE Alu 180 280 -32 30 0 0 0 chr3 3102651 3102681 -214934477 + AT_rich Low_complexity Low_complexity 1 30 0 382 296 23 109 chr3 3103393 3103650 -214933508 - MIR SINE MIR -9 253 19 244 291 0 25 chr3 3103821 3103900 -214933258 - MIR3 SINE MIR 0 208 132 250 229 148 0 chr3 3103903 3103964 -214933194 - L2 LINE L2 -2 3270 3201 375 269 53 33 chr3 3104811 3104975 -214932183 - LTR43 LTR ERV1 -207 472 154 412 272 72 56 chr3 3105176 3105371 -214931787 + MLT1K LTR MaLR 224 421 -167 871 316 78 22 chr3 3105581 3106180 -214930978 + L1ME4a LINE L1 5348 5980 -141 1585 259 14 11 chr3 3106290 3106649 -214930509 + MLT1A2 LTR MaLR 1 360 -14 333 183 42 0 chr3 3107075 3107146 -214930012 + MER116 DNA Mariner 1 74 -6 2075 128 6 10 chr3 3108883 3109227 -214927931 - AluSx SINE Alu 0 343 1 234 222 139 28 chr3 3109828 3109936 -214927222 - MER113 DNA MER1_type? -401 120 1 1185 254 81 47 chr3 3110618 3111063 -214926095 - MLT1D LTR MaLR 0 505 46 1679 184 62 42 chr3 3111065 3111246 -214925912 - MLT2D LTR ERVL -3 411 235 2775 195 22 68 chr3 3111246 3111888 -214925270 + LTR9 LTR ERV1 1 612 0 1679 184 62 42 chr3 3111888 3111998 -214925160 - MLT2D LTR ERVL -179 235 129 2393 60 0 13 chr3 3111998 3112297 -214924861 + AluY SINE Alu 1 295 -16 1679 184 62 42 chr3 3112297 3112407 -214924751 - MLT2D LTR ERVL -285 129 1 237 143 24 24 chr3 3112415 3112457 -214924701 - MLT1D LTR MaLR -463 42 1 786 216 32 42 chr3 3112474 3112664 -214924494 - MIR SINE MIR -38 224 37 238 329 0 37 chr3 3112917 3112999 -214924159 - L2 LINE L2 -2 3270 3192 223 309 53 59 chr3 3113534 3113613 -214923545 - MIR SINE MIR -40 222 143 2289 83 48 0 chr3 3113613 3113902 -214923256 - AluSc SINE Alu -6 303 1 223 309 53 59 chr3 3113902 3113974 -214923184 - MIR SINE MIR -119 143 72 4187 118 24 5 chr3 3114597 3115188 -214921970 - LTR43 LTR ERV1 0 602 1 302 291 122 17 chr3 3115259 3115431 -214921727 + MIR SINE MIR 73 262 0 1714 174 98 113 chr3 3115521 3115819 -214921339 - MLT1D LTR MaLR 0 505 217 3621 158 6 2 chr3 3115819 3116344 -214920814 - MER1A DNA MER1_type 0 527 1 1714 174 98 113 chr3 3116344 3116558 -214920600 - MLT1D LTR MaLR -288 217 1 277 209 132 62 chr3 3116826 3116955 -214920203 - MLT1J2 LTR MaLR -310 140 3 2338 148 133 2 chr3 3118363 3118763 -214918395 - LTR47A LTR ERVL 0 452 1 4812 139 44 65 chr3 3118775 3120256 -214916902 - MER83B-int LTR ERV1 -258 5840 4411 394 36 18 18 chr3 3120257 3120312 -214916846 - MLT2A1 LTR ERVL 0 453 399 261 0 0 0 chr3 3120316 3120345 -214916813 + (TG)n Simple_repeat Simple_repeat 2 30 0 2202 64 37 7 chr3 3120365 3120660 -214916498 - MLT2A1 LTR ERVL -140 304 1 4759 221 82 41 chr3 3120660 3121659 -214915499 - MER83B-int LTR ERV1 -2026 2165 1209 216 0 0 0 chr3 3121659 3121683 -214915475 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 891 129 0 30 chr3 3121685 3121817 -214915341 - FLAM_C SINE Alu -5 128 1 4759 221 82 41 chr3 3121817 3122038 -214915120 - MER83B-int LTR ERV1 -2982 1209 891 1570 181 4 0 chr3 3122041 3122322 -214914836 - MER41B LTR ERV1 -353 282 1 699 171 43 41 chr3 3122339 3122533 -214914625 - MER83B-int LTR ERV1 -2590 2290 2009 307 293 75 34 chr3 3122675 3122822 -214914336 - LTR47A-int LTR ERVL -5176 167 15 1590 142 47 4 chr3 3122836 3122854 -214914304 - LTR47A LTR ERVL 0 452 436 1953 169 156 5 chr3 3122854 3123226 -214913932 + MSTA LTR MaLR 1 428 0 1590 142 47 4 chr3 3123226 3123592 -214913566 - LTR47A LTR ERVL -16 436 1 577 277 141 5 chr3 3123608 3123814 -214913344 + MIR SINE MIR 23 256 -6 28 0 0 0 chr3 3124330 3124358 -214912800 + AT_rich Low_complexity Low_complexity 1 28 0 1988 145 0 16 chr3 3124358 3124661 -214912497 + AluSx SINE Alu 1 298 -14 220 286 48 24 chr3 3124683 3124767 -214912391 - MIR SINE MIR -22 240 155 1335 215 87 36 chr3 3124998 3125084 -214912074 - MER113 DNA MER1_type? -1 520 440 4294 139 67 10 chr3 3125084 3125772 -214911386 - LTR8A LTR ERV1 0 727 1 1335 215 87 36 chr3 3125772 3126178 -214910980 - MER113 DNA MER1_type? -81 440 3 798 188 17 104 chr3 3126299 3126539 -214910619 + MER20 DNA MER1_type 1 219 0 27 49 0 0 chr3 3126957 3126998 -214910160 + AT_rich Low_complexity Low_complexity 1 41 0 1853 173 7 0 chr3 3126998 3127304 -214909854 + AluJb SINE Alu 1 308 -4 243 0 0 0 chr3 3127304 3127331 -214909827 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 252 0 0 0 chr3 3127330 3127358 -214909800 + (CA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr3 3128679 3128700 -214908458 + AT_rich Low_complexity Low_complexity 1 21 0 690 297 72 43 chr3 3129184 3129624 -214907534 + Charlie8 DNA MER1_type 1 440 -1977 422 16 0 109 chr3 3129717 3129781 -214907377 - MLT2B1 LTR ERVL 0 520 464 213 175 0 0 chr3 3129784 3129824 -214907334 + (CATA)n Simple_repeat Simple_repeat 4 43 0 276 170 0 130 chr3 3129824 3129924 -214907234 - L1MC4 LINE L1 -1339 6703 6617 273 196 21 93 chr3 3129838 3129935 -214907223 + L1MC4 LINE L1 6614 6703 -1339 * 2249 185 41 30 chr3 3129974 3130438 -214906720 - MLT2B1 LTR ERVL -51 469 1 407 300 110 11 chr3 3131802 3132003 -214905155 + MIR SINE MIR 19 237 -25 747 290 136 18 chr3 3133321 3133762 -214903396 - L2 LINE L2 0 3313 2821 2055 109 35 109 chr3 3133771 3134176 -214902982 + THE1C LTR MaLR 1 375 0 349 289 47 57 chr3 3134176 3134387 -214902771 + MLT1I LTR MaLR 175 383 -26 439 239 92 23 chr3 3134726 3134856 -214902302 - MLT1J2 LTR MaLR -275 175 37 193 276 0 52 chr3 3135027 3135085 -214902073 + MIR3 SINE MIR 8 62 -146 4922 172 27 34 chr3 3135195 3136581 -214900577 + L1MB3 LINE L1 4810 6181 -2 2324 135 33 33 chr3 3138105 3138174 -214898984 - THE1B LTR MaLR 0 364 296 1994 125 3 14 chr3 3138174 3138471 -214898687 + AluSx SINE Alu 1 294 -18 2324 135 33 33 chr3 3138471 3138765 -214898393 - THE1B LTR MaLR -67 297 1 297 320 70 31 chr3 3139536 3139664 -214897494 + L2 LINE L2 3132 3264 -8 1928 147 3 13 chr3 3139899 3140212 -214896946 - AluJb SINE Alu -2 310 1 1721 170 10 10 chr3 3141146 3141446 -214895712 + AluJo SINE Alu 1 300 -12 1280 177 42 100 chr3 3141461 3141771 -214895387 + AluJo SINE Alu 1 292 -20 189 288 225 0 chr3 3141843 3141923 -214895235 - L3 LINE CR1 -292 1285 1188 2433 121 22 25 chr3 3142015 3142380 -214894778 + THE1B LTR MaLR 1 364 0 621 317 176 32 chr3 3142383 3142724 -214894434 - L3 LINE CR1 -437 1140 751 345 232 72 65 chr3 3143830 3143968 -214893190 + MER103 DNA DNA 10 148 -18 272 375 13 33 chr3 3144024 3144176 -214892982 - MIR3 SINE MIR -39 169 21 542 239 43 111 chr3 3144479 3144570 -214892588 - Charlie8 DNA MER1_type -122 219 123 2145 109 0 50 chr3 3144570 3144891 -214892267 + AluSx SINE Alu 5 309 -3 542 239 43 111 chr3 3144891 3145033 -214892125 - Charlie8 DNA MER1_type -218 123 2 5415 129 16 5 chr3 3145303 3146119 -214891039 - L1MC1 LINE L1 0 6333 5509 442 306 25 13 chr3 3147173 3147330 -214889828 + MIR SINE MIR 104 262 0 337 258 13 0 chr3 3147511 3147598 -214889560 + MIR SINE MIR 40 126 -92 311 301 68 20 chr3 3147599 3147745 -214889413 + MIR SINE MIR 49 201 -61 993 215 45 0 chr3 3147991 3148191 -214888967 + MER3 DNA MER1_type 1 209 0 2426 96 0 0 chr3 3148712 3149024 -214888134 + AluSx SINE Alu 1 312 0 580 294 99 14 chr3 3149199 3149420 -214887738 + MIR SINE MIR 18 257 -5 261 119 48 0 chr3 3150249 3150291 -214886867 + MLT1D LTR MaLR 308 351 -154 * 1154 164 116 58 chr3 3150267 3150578 -214886580 - MLT1D LTR MaLR -165 340 12 817 258 33 16 chr3 3150663 3150845 -214886313 + MER5A DNA MER1_type 1 185 -4 3242 138 14 68 chr3 3151146 3151502 -214885656 - LTR26B LTR ERV1 0 531 214 1604 174 19 47 chr3 3151502 3151819 -214885339 - AluJb SINE Alu -4 308 1 3242 138 14 68 chr3 3151819 3152020 -214885138 - LTR26B LTR ERV1 -317 214 4 415 253 114 32 chr3 3152186 3152344 -214884814 - MIR3 SINE MIR 0 208 38 1071 103 0 7 chr3 3152739 3152885 -214884273 - AluSg/x SINE Alu -30 279 135 438 333 0 0 chr3 3154002 3154113 -214883045 + L2 LINE L2 3157 3267 -5 23 0 0 0 chr3 3154121 3154144 -214883014 + AT_rich Low_complexity Low_complexity 1 23 0 2734 103 8 5 chr3 3154203 3154590 -214882568 + L1PB1 LINE L1 5763 6150 -1 298 347 200 7 chr3 3155487 3155637 -214881521 - MER5A DNA MER1_type -10 179 1 360 364 23 6 chr3 3156156 3156332 -214880826 + MIR3 SINE MIR 17 195 -13 1889 197 16 101 chr3 3156424 3156971 -214880187 + MLT1D LTR MaLR 3 503 -2 220 324 14 0 chr3 3157151 3157225 -214879933 + (TA)n Simple_repeat Simple_repeat 2 76 0 186 283 170 28 chr3 3157470 3157576 -214879582 - MIR3 SINE MIR -4 204 84 327 274 183 7 chr3 3157952 3158105 -214879053 - MIR3 SINE MIR -14 194 15 227 291 0 0 chr3 3159012 3159067 -214878091 - MIR3 SINE MIR 0 208 154 433 256 53 0 chr3 3159069 3159202 -214877956 + MER117 DNA MER1_type 2 141 -56 198 208 260 39 chr3 3159258 3159335 -214877823 - MIR3 SINE MIR -52 156 63 206 373 15 0 chr3 3159704 3159771 -214877387 - L2 LINE L2 -7 3265 3198 2214 124 3 0 chr3 3159938 3160245 -214876913 + AluSq SINE Alu 1 308 -5 1188 263 59 52 chr3 3160335 3160796 -214876362 - L1ME3A LINE L1 -1 6169 5706 457 78 16 0 chr3 3160818 3160882 -214876276 - MER41B LTR ERV1 -90 545 481 1108 287 89 2 chr3 3160882 3161276 -214875882 - L1ME3A LINE L1 -452 5718 5291 842 228 216 8 chr3 3161353 3161831 -214875327 - LTR50 LTR ERVL 0 795 124 1510 164 115 86 chr3 3161973 3162490 -214874668 - LTR36 LTR ERV1 0 611 1 643 187 66 30 chr3 3162508 3162695 -214874463 - MIR SINE MIR -21 241 47 1182 199 17 39 chr3 3163602 3163833 -214873325 - AluJo SINE Alu -86 226 1 819 207 92 6 chr3 3163833 3164007 -214873151 - MLT1D LTR MaLR -313 192 4 22 35 0 0 chr3 3165587 3165616 -214871542 + AT_rich Low_complexity Low_complexity 1 29 0 278 296 61 17 chr3 3166094 3166209 -214870949 + MIR SINE MIR 137 256 -6 31 76 0 0 chr3 3166561 3166627 -214870531 + AT_rich Low_complexity Low_complexity 1 66 0 459 63 0 0 chr3 3166877 3166940 -214870218 + (TG)n Simple_repeat Simple_repeat 2 64 0 366 267 0 11 chr3 3166940 3167030 -214870128 - LTR67 LTR ERVL -9 548 460 345 235 43 17 chr3 3167039 3167154 -214870004 - L1ME LINE L1 -374 5747 5630 294 290 30 53 chr3 3167686 3167817 -214869341 + L2 LINE L2 3182 3309 -4 201 237 0 0 chr3 3168545 3168604 -214868554 + (TA)n Simple_repeat Simple_repeat 2 60 0 742 249 73 96 chr3 3168649 3169051 -214868107 + MLT1I LTR MaLR 1 402 -7 209 296 59 89 chr3 3169060 3169195 -214867963 - MIR SINE MIR -61 147 17 468 0 0 0 chr3 3170376 3170428 -214866730 + (CA)n Simple_repeat Simple_repeat 2 53 0 449 301 65 37 chr3 3170442 3170688 -214866470 - Charlie8 DNA MER1_type -2160 257 5 337 195 26 26 chr3 3171213 3171290 -214865868 - MLT1L LTR MaLR -536 79 3 194 298 0 0 chr3 3171305 3171362 -214865796 - L2 LINE L2 -2 3311 3255 21 36 0 0 chr3 3171439 3171467 -214865691 + AT_rich Low_complexity Low_complexity 1 28 0 1121 265 70 26 chr3 3171500 3172065 -214865093 - L2 LINE L2 -159 3154 2570 1789 164 7 20 chr3 3172094 3172392 -214864766 + AluJb SINE Alu 1 294 -18 22 0 0 0 chr3 3172392 3172414 -214864744 + AT_rich Low_complexity Low_complexity 1 22 0 222 338 13 0 chr3 3173557 3173634 -214863524 - MIR SINE MIR -63 145 68 186 293 35 0 chr3 3174362 3174420 -214862738 + MIR3 SINE MIR 112 171 -37 376 303 141 15 chr3 3175127 3175325 -214861833 - MIR SINE MIR 0 262 40 203 79 26 0 chr3 3176343 3176381 -214860777 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1002 146 189 5 chr3 3177224 3177409 -214859749 - MER20 DNA MER1_type 0 219 1 23 0 0 0 chr3 3177572 3177595 -214859563 + AT_rich Low_complexity Low_complexity 1 23 0 2289 112 0 0 chr3 3177623 3177926 -214859232 - AluSx SINE Alu -9 303 1 315 365 0 0 chr3 3178082 3178197 -214858961 - MIR3 SINE MIR -23 185 71 298 163 0 0 chr3 3178197 3178246 -214858912 + L1MC3 LINE L1 7045 7093 -692 291 262 24 12 chr3 3178250 3178334 -214858824 + MLT1F1 LTR MaLR 40 124 -443 2180 187 74 71 chr3 3178335 3178930 -214858228 + L1MC3 LINE L1 7189 7785 0 2220 112 0 13 chr3 3179717 3180020 -214857138 - AluSx SINE Alu -13 299 1 2094 121 0 0 chr3 3181021 3181326 -214855832 + AluSx SINE Alu 1 305 0 520 281 67 12 chr3 3181740 3181904 -214855254 - MER5B DNA MER1_type 0 178 6 276 87 0 43 chr3 3182616 3182662 -214854496 + L2 LINE L2 3195 3238 -75 2162 112 3 0 chr3 3183274 3183569 -214853589 + AluSp SINE Alu 1 296 -17 390 363 57 6 chr3 3183757 3183914 -214853244 - MIR3 SINE MIR -24 184 20 28 0 0 0 chr3 3184022 3184050 -214853108 + AT_rich Low_complexity Low_complexity 1 28 0 1771 190 7 3 chr3 3184098 3184393 -214852765 + AluSx SINE Alu 1 296 -16 2365 123 5 32 chr3 3187904 3188278 -214848880 - THE1B LTR MaLR 0 364 1 7667 128 30 8 chr3 3188607 3189919 -214847239 - Tigger1 DNA MER2_type 0 2418 1079 3359 134 107 6 chr3 3189910 3190544 -214846614 - Tigger1 DNA MER2_type -1658 760 63 * 292 211 273 19 chr3 3192396 3192557 -214844601 - L1MC4a LINE L1 -1859 5949 5748 1688 80 0 0 chr3 3192692 3192905 -214844253 + AluSg SINE Alu 1 213 -97 348 236 183 21 chr3 3192947 3193138 -214844020 - L1MC4a LINE L1 -2291 5517 5296 547 300 143 29 chr3 3193174 3193718 -214843440 - L1MC4a LINE L1 -908 5238 4633 26 0 0 0 chr3 3193989 3194015 -214843143 + AT_rich Low_complexity Low_complexity 1 26 0 360 232 36 94 chr3 3195076 3195184 -214841974 + L2 LINE L2 3182 3282 -31 2557 98 30 6 chr3 3195184 3195550 -214841608 - THE1C LTR MaLR 0 375 1 360 232 36 94 chr3 3195550 3195579 -214841579 + L2 LINE L2 3282 3311 -2 563 280 13 13 chr3 3195583 3195733 -214841425 + MIR SINE MIR 34 183 -79 1688 188 40 3 chr3 3195986 3196311 -214840847 + MER1B DNA MER1_type 1 337 0 245 295 105 11 chr3 3196402 3196497 -214840661 - L3 LINE CR1 -278 1299 1196 275 282 57 0 chr3 3197084 3197208 -214839950 - L1MC/D LINE L1 -1983 5825 5695 235 254 211 7 chr3 3197245 3197387 -214839771 - L1MC/D LINE L1 -1445 4701 4531 1890 151 18 0 chr3 3198283 3198568 -214838590 + AluJb SINE Alu 9 298 -14 256 267 67 33 chr3 3198808 3198898 -214838260 + MIR SINE MIR 13 105 -157 1055 130 0 34 chr3 3202051 3202228 -214834930 + AluSg/x SINE Alu 124 294 -15 428 255 135 20 chr3 3207348 3207548 -214829610 - MIR SINE MIR -9 253 31 258 282 0 113 chr3 3208058 3208182 -214828976 - MIR3 SINE MIR -12 196 87 2430 69 3 0 chr3 3208851 3209155 -214828003 - AluY SINE Alu -6 305 1 265 368 60 8 chr3 3209265 3209382 -214827776 + L2 LINE L2 3191 3313 0 233 274 140 18 chr3 3210449 3210506 -214826652 + L1MC/D LINE L1 5352 5401 -2407 1743 149 72 0 chr3 3210506 3210782 -214826376 - AluSx SINE Alu -16 296 1 233 274 140 18 chr3 3210782 3210888 -214826270 + L1MC/D LINE L1 5401 5535 -2273 462 306 0 0 chr3 3211060 3211171 -214825987 - MER81 DNA DNA 0 114 4 714 254 215 0 chr3 3211890 3212095 -214825063 + MIR SINE MIR 6 254 -8 388 352 49 6 chr3 3212363 3212525 -214824633 + MIR SINE MIR 81 249 -13 427 315 34 0 chr3 3212827 3212973 -214824185 + MER117 DNA MER1_type 11 161 -36 220 214 18 18 chr3 3213020 3213076 -214824082 + (TG)n Simple_repeat Simple_repeat 1 56 0 491 221 302 0 chr3 3213120 3213292 -214823866 - MIR SINE MIR -10 252 29 2263 71 35 0 chr3 3213294 3213576 -214823582 - AluY SINE Alu -19 292 1 1877 154 3 13 chr3 3214348 3214659 -214822499 + AluJb SINE Alu 1 308 -4 206 342 57 19 chr3 3214676 3214834 -214822324 - L2 LINE L2 -192 3080 2917 432 288 113 19 chr3 3215176 3215388 -214821770 + HAL1 LINE L1 434 665 -1842 383 306 89 0 chr3 3215574 3215855 -214821303 + HAL1 LINE L1 984 1289 -1218 1643 249 190 30 chr3 3215859 3216686 -214820472 + HAL1 LINE L1 1340 2298 -209 212 292 79 22 chr3 3217206 3217295 -214819863 - MIR3 SINE MIR -25 183 90 2125 141 13 0 chr3 3217426 3217732 -214819426 + AluJo SINE Alu 1 310 -2 1474 206 109 43 chr3 3218085 3218591 -214818567 + MER90 LTR ERV1 70 608 -6 474 204 160 18 chr3 3219198 3219423 -214817735 + MER112 DNA MER1_type 4 260 0 1498 180 17 30 chr3 3220812 3221107 -214816051 - AluJb SINE Alu -21 291 1 226 229 0 0 chr3 3221619 3221680 -214815478 + T-rich Low_complexity Low_complexity 1 61 0 7604 15 0 0 chr3 3221682 3222915 -214814243 - L1HS LINE L1 0 6155 4923 688 129 103 189 chr3 3223151 3223285 -214813873 + MER33 DNA MER1_type 1 145 -2440 1734 167 20 7 chr3 3223285 3223579 -214813579 - AluJb SINE Alu -14 298 1 688 129 103 189 chr3 3223579 3223794 -214813364 + MER33 DNA MER1_type 145 320 -4 534 236 48 36 chr3 3224021 3224186 -214812972 - MER5B DNA MER1_type -1 177 11 293 367 17 0 chr3 3224474 3224594 -214812564 + MIR SINE MIR 8 129 -133 860 131 77 0 chr3 3224783 3224913 -214812245 - FRAM SINE Alu -17 159 20 583 99 148 10 chr3 3224962 3225063 -214812095 + FLAM_C SINE Alu 5 119 -24 23 0 0 0 chr3 3225068 3225091 -214812067 + AT_rich Low_complexity Low_complexity 1 23 0 4223 92 21 21 chr3 3225562 3225753 -214811405 + PABL_A LTR ERV1 1 191 -469 2343 93 0 7 chr3 3225753 3226063 -214811095 - AluSx SINE Alu -4 308 1 4223 92 21 21 chr3 3226063 3226522 -214810636 + PABL_A LTR ERV1 190 651 -9 1802 97 37 23 chr3 3228129 3228429 -214808729 - AluSq SINE Alu -9 304 1 888 210 189 7 chr3 3228987 3229201 -214807957 + MER2 DNA MER2_type 1 283 -61 2305 92 0 0 chr3 3229201 3229496 -214807662 - AluSx SINE Alu -13 299 5 888 210 189 7 chr3 3229496 3229572 -214807586 + MER2 DNA MER2_type 283 344 0 308 64 21 0 chr3 3229572 3229619 -214807539 + (GA)n Simple_repeat Simple_repeat 1 48 0 2595 258 52 18 chr3 3229648 3230678 -214806480 + L1ME1 LINE L1 3292 4356 -1790 1546 193 14 14 chr3 3230780 3231065 -214806093 + AluJb SINE Alu 1 285 -27 22 0 0 0 chr3 3231065 3231087 -214806071 + AT_rich Low_complexity Low_complexity 1 22 0 2477 233 26 51 chr3 3231087 3231127 -214806031 + L1ME1 LINE L1 5403 5443 -723 2053 131 7 0 chr3 3231127 3231418 -214805740 - AluSg SINE Alu -17 293 1 2477 233 26 51 chr3 3231418 3231921 -214805237 + L1ME1 LINE L1 5443 5957 -209 2189 113 0 0 chr3 3231921 3232214 -214804944 + AluSg SINE Alu 1 293 -17 2477 233 26 51 chr3 3232214 3232397 -214804761 + L1ME1 LINE L1 5957 6111 -55 1731 151 156 42 chr3 3232397 3232470 -214804688 - MSTA LTR MaLR 0 428 365 2413 52 0 29 chr3 3232470 3232776 -214804382 + AluY SINE Alu 1 297 -14 1731 151 156 42 chr3 3232776 3233086 -214804072 - MSTA LTR MaLR -63 365 1 2477 233 26 51 chr3 3233086 3233135 -214804023 + L1ME1 LINE L1 6111 6160 -6 1754 139 58 41 chr3 3233601 3233896 -214803262 + AluSx SINE Alu 1 300 -12 180 77 0 0 chr3 3234235 3234261 -214802897 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 561 278 131 0 chr3 3234336 3234512 -214802646 - MIR SINE MIR -32 230 32 672 178 8 0 chr3 3234852 3234970 -214802188 - MLT1D LTR MaLR 0 505 387 2275 104 0 0 chr3 3235179 3235477 -214801681 - AluSx SINE Alu -3 309 12 1523 195 3 36 chr3 3235700 3236008 -214801150 + AluJo SINE Alu 1 298 -14 863 168 0 0 chr3 3236052 3236177 -214800981 + AluJb SINE Alu 1 125 -187 1857 158 18 0 chr3 3237038 3237322 -214799836 + AluJo SINE Alu 1 289 -23 21 36 0 0 chr3 3237326 3237354 -214799804 + AT_rich Low_complexity Low_complexity 1 28 0 202 144 22 0 chr3 3237615 3237661 -214799497 + MIR SINE MIR 99 146 -62 2022 137 0 22 chr3 3237776 3238091 -214799067 + AluSx SINE Alu 3 310 -2 4444 182 19 25 chr3 3238372 3239252 -214797906 - L1MB8 LINE L1 0 6178 5304 839 199 6 0 chr3 3239255 3239411 -214797747 - FRAM SINE Alu 0 40 1 2019 181 57 53 chr3 3239413 3239541 -214797617 - L1MB8 LINE L1 -830 5316 5190 2072 121 4 4 chr3 3239541 3239843 -214797315 - AluSx SINE Alu 0 302 1 2019 181 57 53 chr3 3239843 3239968 -214797190 - L1MB8 LINE L1 -956 5190 5067 2284 110 0 10 chr3 3239968 3240277 -214796881 + AluSx SINE Alu 6 311 -1 2019 181 57 53 chr3 3240277 3240546 -214796612 - L1MB8 LINE L1 -1079 5067 4789 274 180 16 141 chr3 3240967 3241095 -214796063 + MLT1H LTR MaLR 438 549 0 338 249 115 91 chr3 3241183 3241241 -214795917 - L1ME4a LINE L1 -232 5889 5834 1906 135 7 0 chr3 3241241 3241522 -214795636 + AluSg SINE Alu 13 295 -15 338 249 115 91 chr3 3241522 3241716 -214795442 - L1ME4a LINE L1 -287 5834 5631 2215 108 0 7 chr3 3241963 3242260 -214794898 + AluSq SINE Alu 1 295 -18 185 0 0 39 chr3 3242364 3242390 -214794768 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2277 97 0 3 chr3 3242549 3242838 -214794320 + AluSx SINE Alu 1 288 -24 251 284 0 68 chr3 3245633 3245721 -214791437 - L2 LINE L2 -23 3249 3168 261 0 0 0 chr3 3246907 3246936 -214790222 + (TTG)n Simple_repeat Simple_repeat 2 30 0 214 409 0 0 chr3 3248133 3248226 -214788932 + MIR SINE MIR 21 113 -149 964 186 9 24 chr3 3249842 3249983 -214787175 + MER3 DNA MER1_type 2 141 -68 1953 143 7 7 chr3 3249983 3250270 -214786888 + AluSx SINE Alu 1 287 -25 964 186 9 24 chr3 3250270 3250338 -214786820 + MER3 DNA MER1_type 141 208 -1 269 269 86 30 chr3 3250432 3250666 -214786492 + L1ME4a LINE L1 5873 6119 -2 665 224 39 86 chr3 3250753 3251008 -214786150 + MER112 DNA MER1_type 6 248 -12 1274 124 0 43 chr3 3251139 3251325 -214785833 + AluSx SINE Alu 1 178 -134 383 246 53 18 chr3 3251988 3252102 -214785056 + MIR3 SINE MIR 14 131 -77 1827 146 38 0 chr3 3253126 3253296 -214783862 - AluSx SINE Alu -14 298 111 414 0 0 0 chr3 3253296 3253342 -214783816 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1827 146 38 0 chr3 3253342 3253458 -214783700 - AluSx SINE Alu -201 111 1 253 109 455 0 chr3 3253847 3253902 -214783256 + MADE1 DNA Mariner 1 80 0 2193 100 7 0 chr3 3254353 3254664 -214782494 + AluSx SINE Alu 1 313 0 1934 163 0 0 chr3 3254683 3254971 -214782187 - AluJb SINE Alu -19 293 6 950 117 7 15 chr3 3254971 3255108 -214782050 - AluJb SINE Alu -176 136 1 294 320 58 19 chr3 3255265 3255421 -214781737 - MIR3 SINE MIR -8 200 39 2021 140 10 0 chr3 3255617 3255910 -214781248 + AluSx SINE Alu 1 296 -16 1493 182 10 42 chr3 3257319 3257632 -214779526 - AluJo SINE Alu -9 303 1 768 209 12 6 chr3 3257668 3257831 -214779327 - MER5A DNA MER1_type -25 164 1 322 292 93 83 chr3 3258231 3258532 -214778626 + L2 LINE L2 2960 3263 -9 183 302 52 10 chr3 3259659 3259755 -214777403 + L2 LINE L2 2563 2662 -652 2163 101 0 3 chr3 3260134 3260430 -214776728 - AluSc SINE Alu -14 295 1 1759 128 7 40 chr3 3261056 3261353 -214775805 - AluJb SINE Alu -13 299 13 845 223 36 16 chr3 3261353 3261546 -214775612 - MER58A DNA MER1_type -9 215 19 287 246 144 8 chr3 3261797 3261915 -214775243 + L2 LINE L2 3170 3303 -10 2330 101 7 0 chr3 3262185 3262493 -214774665 + AluSp SINE Alu 1 310 -3 537 188 240 19 chr3 3262753 3262907 -214774251 + MER53 DNA DNA 2 189 0 213 121 0 0 chr3 3263085 3263118 -214774040 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 267 315 63 14 chr3 3263156 3263299 -214773859 + MIR SINE MIR 12 161 -101 184 358 0 0 chr3 3263449 3263516 -214773642 + L2 LINE L2 3205 3271 -1 2272 128 0 0 chr3 3263785 3264090 -214773068 - AluSg SINE Alu -5 305 1 426 230 104 22 chr3 3266836 3266971 -214770187 - L2 LINE L2 -5 3267 3122 2176 99 51 0 chr3 3267339 3267633 -214769525 + AluSx SINE Alu 1 309 -3 672 178 8 0 chr3 3267842 3267960 -214769198 + MLT1D LTR MaLR 387 505 0 499 258 141 0 chr3 3268300 3268463 -214768695 + MIR SINE MIR 32 217 -45 180 77 0 0 chr3 3268551 3268577 -214768581 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 1752 139 58 41 chr3 3268916 3269211 -214767947 - AluSx SINE Alu -12 300 1 2777 231 45 80 chr3 3269677 3269726 -214767432 - L1ME1 LINE L1 -6 6160 6111 1817 140 153 42 chr3 3269726 3270037 -214767121 + MSTA LTR MaLR 1 365 -63 2463 52 0 29 chr3 3270037 3270343 -214766815 - AluY SINE Alu -14 297 1 1817 140 153 42 chr3 3270343 3270416 -214766742 + MSTA LTR MaLR 365 428 0 2777 231 45 80 chr3 3270416 3270599 -214766559 - L1ME1 LINE L1 -55 6111 5923 2215 113 0 0 chr3 3270599 3270892 -214766266 - AluSg SINE Alu -17 293 1 2777 231 45 80 chr3 3270892 3271395 -214765763 - L1ME1 LINE L1 -243 5923 5404 1812 165 7 0 chr3 3271395 3271686 -214765472 + AluSg SINE Alu 1 293 -17 2777 231 45 80 chr3 3271686 3271748 -214765410 - L1ME1 LINE L1 -762 5404 5411 1536 193 14 14 chr3 3271748 3272033 -214765125 - AluJb SINE Alu -27 285 1 2777 231 45 80 chr3 3272033 3272091 -214765067 - L1ME1 LINE L1 -754 5412 5353 2948 249 57 23 chr3 3272135 3273165 -214763993 - L1ME1 LINE L1 -1790 4356 3292 308 64 21 0 chr3 3273193 3273240 -214763918 + (TC)n Simple_repeat Simple_repeat 1 48 0 930 213 189 7 chr3 3273240 3273316 -214763842 - MER2 DNA MER2_type 0 344 283 2335 92 0 0 chr3 3273316 3273611 -214763547 + AluSx SINE Alu 5 299 -13 930 213 189 7 chr3 3273611 3273825 -214763333 - MER2 DNA MER2_type -61 283 1 1863 97 37 23 chr3 3274383 3274683 -214762475 + AluSq SINE Alu 1 304 -9 22 0 0 0 chr3 3275560 3275582 -214761576 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr3 3276314 3276344 -214760814 + (GA)n Simple_repeat Simple_repeat 1 30 0 1636 169 6 49 chr3 3277360 3277685 -214759473 - AluJo SINE Alu -1 311 1 768 209 12 6 chr3 3277721 3277884 -214759274 - MER5A DNA MER1_type -25 164 1 322 292 93 83 chr3 3278284 3278585 -214758573 + L2 LINE L2 2960 3263 -9 183 302 52 10 chr3 3279712 3279808 -214757350 + L2 LINE L2 2563 2662 -652 2163 101 0 3 chr3 3280187 3280483 -214756675 - AluSc SINE Alu -14 295 1 1759 128 7 40 chr3 3281109 3281406 -214755752 - AluJb SINE Alu -13 299 13 845 223 36 16 chr3 3281406 3281599 -214755559 - MER58A DNA MER1_type -9 215 19 287 246 144 8 chr3 3281850 3281968 -214755190 + L2 LINE L2 3170 3303 -10 2206 106 7 0 chr3 3282238 3282531 -214754627 + AluSx SINE Alu 1 295 -17 2222 114 23 0 chr3 3282635 3282934 -214754224 + AluJb SINE Alu 1 306 -6 826 169 0 0 chr3 3283518 3283648 -214753510 - FLAM_A SINE Alu -1 132 3 264 350 57 13 chr3 3283731 3283888 -214753270 + MIR3 SINE MIR 45 208 0 1960 221 47 10 chr3 3284046 3284553 -214752605 - L1M4 LINE L1 -1208 4938 4413 1221 181 42 0 chr3 3284571 3284786 -214752372 - MER58A DNA MER1_type 0 224 1 2168 98 28 0 chr3 3285214 3285500 -214751658 - AluSx SINE Alu -18 294 1 1706 195 7 0 chr3 3286247 3286539 -214750619 + AluJb SINE Alu 1 294 -18 396 0 0 0 chr3 3286540 3286584 -214750574 + (CA)n Simple_repeat Simple_repeat 2 45 0 659 165 78 0 chr3 3286680 3286795 -214750363 - FLAM_C SINE Alu -19 124 1 213 346 30 20 chr3 3286908 3287009 -214750149 + L2 LINE L2 3169 3270 -2 1517 113 0 18 chr3 3287254 3287475 -214749683 + AluSg SINE Alu 1 217 -93 2337 87 0 3 chr3 3287679 3287979 -214749179 + AluY SINE Alu 1 299 -12 2175 104 3 3 chr3 3288132 3288420 -214748738 + AluSq SINE Alu 1 288 -25 280 358 9 18 chr3 3288501 3288610 -214748548 + MIR SINE MIR 14 121 -141 1775 164 21 3 chr3 3288660 3288946 -214748212 - AluJb SINE Alu -21 291 1 1210 149 0 0 chr3 3288946 3289147 -214748011 - LTR26B LTR ERV1 -327 204 4 414 253 114 32 chr3 3289313 3289471 -214747687 - MIR3 SINE MIR 0 208 38 1064 103 0 7 chr3 3289866 3290012 -214747146 - AluSg/x SINE Alu -30 279 135 416 351 0 0 chr3 3291129 3291240 -214745918 + L2 LINE L2 3157 3267 -5 23 0 0 0 chr3 3291248 3291271 -214745887 + AT_rich Low_complexity Low_complexity 1 23 0 2537 103 8 5 chr3 3291330 3291717 -214745441 + L1PB1 LINE L1 5763 6150 -1 305 347 200 7 chr3 3292611 3292761 -214744397 - MER5A DNA MER1_type -10 179 1 217 210 65 32 chr3 3292781 3292843 -214744315 + L2 LINE L2 3167 3230 -42 216 171 0 0 chr3 3292871 3292906 -214744252 + (TGGA)n Simple_repeat Simple_repeat 3 37 0 381 358 23 6 chr3 3293281 3293457 -214743701 + MIR3 SINE MIR 17 195 -13 1657 201 16 101 chr3 3293549 3294096 -214743062 + MLT1D LTR MaLR 3 503 -2 220 324 14 0 chr3 3294276 3294350 -214742808 + (TA)n Simple_repeat Simple_repeat 2 76 0 208 274 170 28 chr3 3294595 3294701 -214742457 - MIR3 SINE MIR -4 204 84 322 281 183 7 chr3 3295077 3295230 -214741928 - MIR3 SINE MIR -14 194 15 231 291 0 0 chr3 3296137 3296192 -214740966 - MIR3 SINE MIR 0 208 154 367 263 53 0 chr3 3296194 3296327 -214740831 + MER117 DNA MER1_type 2 141 -56 199 208 260 39 chr3 3296383 3296460 -214740698 - MIR3 SINE MIR -52 156 63 209 373 15 0 chr3 3296833 3296900 -214740258 - L2 LINE L2 -7 3265 3198 2243 123 3 0 chr3 3297067 3297376 -214739782 + AluSq SINE Alu 1 310 -3 1061 242 66 44 chr3 3297475 3297903 -214739255 - L1ME3A LINE L1 -8 6162 5730 422 78 16 0 chr3 3297949 3298013 -214739145 - MER41A LTR ERV1 -90 464 400 960 287 89 2 chr3 3298013 3298407 -214738751 - L1ME3A LINE L1 -452 5718 5291 730 236 220 0 chr3 3298484 3298942 -214738216 - LTR50 LTR ERVL 0 795 140 1378 166 115 86 chr3 3299104 3299621 -214737537 - LTR36 LTR ERV1 0 611 1 648 222 63 16 chr3 3299639 3299828 -214737330 - MIR SINE MIR -21 241 44 1329 178 24 0 chr3 3300733 3300946 -214736212 - AluJo SINE Alu -86 226 9 366 315 53 107 chr3 3300987 3301362 -214735796 + L2 LINE L2 2918 3272 0 1895 196 107 11 chr3 3301764 3302046 -214735112 - MLT1D LTR MaLR 0 505 161 1801 174 13 30 chr3 3302046 3302345 -214734813 - AluJo SINE Alu -18 294 1 1895 196 107 11 chr3 3302345 3302520 -214734638 - MLT1D LTR MaLR -344 161 4 183 276 107 102 chr3 3302683 3302908 -214734250 + MIR SINE MIR 34 259 -3 22 35 0 0 chr3 3304100 3304129 -214733029 + AT_rich Low_complexity Low_complexity 1 29 0 285 296 61 17 chr3 3304607 3304722 -214732436 + MIR SINE MIR 137 256 -6 31 76 0 0 chr3 3305074 3305140 -214732018 + AT_rich Low_complexity Low_complexity 1 66 0 351 78 0 0 chr3 3305389 3305440 -214731718 + (TG)n Simple_repeat Simple_repeat 2 52 0 302 276 0 11 chr3 3305442 3305529 -214731629 - LTR67 LTR ERVL -12 545 460 293 235 43 17 chr3 3305538 3305653 -214731505 - L1ME LINE L1 -374 5747 5630 300 290 30 53 chr3 3306185 3306316 -214730842 + L2 LINE L2 3182 3309 -4 201 237 0 0 chr3 3307044 3307103 -214730055 + (TA)n Simple_repeat Simple_repeat 2 60 0 618 248 53 96 chr3 3307195 3307550 -214729608 + MLT1I LTR MaLR 63 402 -7 210 296 59 89 chr3 3307559 3307694 -214729464 - MIR SINE MIR -61 147 17 393 22 0 0 chr3 3308875 3308921 -214728237 + (CA)n Simple_repeat Simple_repeat 2 47 0 384 297 65 37 chr3 3308935 3309181 -214727977 - Charlie8 DNA MER1_type -2160 257 5 305 195 26 26 chr3 3309706 3309783 -214727375 - MLT1L LTR MaLR -536 79 3 199 298 0 0 chr3 3309798 3309855 -214727303 - L2 LINE L2 -2 3311 3255 21 36 0 0 chr3 3309932 3309960 -214727198 + AT_rich Low_complexity Low_complexity 1 28 0 1098 267 70 26 chr3 3309993 3310558 -214726600 - L2 LINE L2 -159 3154 2570 1818 161 7 20 chr3 3310587 3310885 -214726273 + AluJb SINE Alu 1 294 -18 207 0 0 0 chr3 3310888 3310911 -214726247 + (TA)n Simple_repeat Simple_repeat 2 24 0 228 338 13 0 chr3 3312054 3312131 -214725027 - MIR SINE MIR -63 145 68 192 293 35 0 chr3 3312859 3312917 -214724241 + MIR3 SINE MIR 112 171 -37 383 301 155 14 chr3 3313630 3313849 -214723309 - MIR SINE MIR 0 262 13 203 79 26 0 chr3 3314846 3314884 -214722274 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 920 146 189 5 chr3 3315727 3315912 -214721246 - MER20 DNA MER1_type 0 219 1 23 0 0 0 chr3 3316075 3316098 -214721060 + AT_rich Low_complexity Low_complexity 1 23 0 2290 112 0 0 chr3 3316126 3316429 -214720729 - AluSx SINE Alu -9 303 1 329 365 0 0 chr3 3316585 3316700 -214720458 - MIR3 SINE MIR -23 185 71 276 163 0 0 chr3 3316700 3316749 -214720409 + L1MC3 LINE L1 7045 7093 -692 258 262 24 12 chr3 3316753 3316837 -214720321 + MLT1F1 LTR MaLR 40 124 -443 1930 185 74 71 chr3 3316838 3317433 -214719725 + L1MC3 LINE L1 7189 7785 0 2223 112 0 13 chr3 3318220 3318523 -214718635 - AluSx SINE Alu -13 299 1 2076 124 0 0 chr3 3319524 3319829 -214717329 + AluSx SINE Alu 1 305 0 527 281 67 12 chr3 3320243 3320407 -214716751 - MER5B DNA MER1_type 0 178 6 275 87 0 43 chr3 3321119 3321165 -214715993 + L2 LINE L2 3195 3238 -75 2177 108 3 0 chr3 3321777 3322072 -214715086 + AluSp SINE Alu 1 296 -17 390 363 57 6 chr3 3322260 3322417 -214714741 - MIR3 SINE MIR -24 184 20 28 0 0 0 chr3 3322525 3322553 -214714605 + AT_rich Low_complexity Low_complexity 1 28 0 1771 190 7 3 chr3 3322601 3322896 -214714262 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr3 3322973 3322994 -214714164 + AT_rich Low_complexity Low_complexity 1 21 0 2365 123 5 32 chr3 3326410 3326784 -214710374 - THE1B LTR MaLR 0 364 1 7698 127 30 8 chr3 3327113 3328425 -214708733 - Tigger1 DNA MER2_type 0 2418 1079 3374 133 107 6 chr3 3328416 3329050 -214708108 - Tigger1 DNA MER2_type -1658 760 63 * 292 211 273 19 chr3 3330902 3331063 -214706095 - L1MC4a LINE L1 -1859 5949 5748 1688 80 0 0 chr3 3331198 3331411 -214705747 + AluSg SINE Alu 1 213 -97 348 236 183 21 chr3 3331453 3331644 -214705514 - L1MC4a LINE L1 -2291 5517 5296 547 300 143 29 chr3 3331680 3332224 -214704934 - L1MC4a LINE L1 -908 5238 4633 26 0 0 0 chr3 3332495 3332521 -214704637 + AT_rich Low_complexity Low_complexity 1 26 0 383 225 36 94 chr3 3333582 3333690 -214703468 + L2 LINE L2 3182 3282 -31 2544 92 30 11 chr3 3333690 3334058 -214703100 - THE1C LTR MaLR 0 375 1 383 225 36 94 chr3 3334058 3334087 -214703071 + L2 LINE L2 3282 3311 -2 563 280 13 13 chr3 3334091 3334241 -214702917 + MIR SINE MIR 34 183 -79 1676 191 40 3 chr3 3334494 3334819 -214702339 + MER1B DNA MER1_type 1 337 0 268 284 105 11 chr3 3334910 3335005 -214702153 - L3 LINE CR1 -278 1299 1196 275 282 57 0 chr3 3335592 3335716 -214701442 - L1MC/D LINE L1 -1983 5825 5695 235 254 211 7 chr3 3335753 3335895 -214701263 - L1MC/D LINE L1 -1445 4701 4531 1914 147 18 0 chr3 3336791 3337076 -214700082 + AluJb SINE Alu 9 298 -14 256 267 67 33 chr3 3337316 3337406 -214699752 + MIR SINE MIR 13 105 -157 1102 122 0 33 chr3 3340560 3340740 -214696418 + AluSg/x SINE Alu 124 297 -12 186 43 0 0 chr3 3341051 3341074 -214696084 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 24 32 0 0 chr3 3344095 3344126 -214693032 + AT_rich Low_complexity Low_complexity 1 31 0 428 255 135 20 chr3 3345900 3346100 -214691058 - MIR SINE MIR -9 253 31 258 282 0 113 chr3 3346610 3346734 -214690424 - MIR3 SINE MIR -12 196 87 2465 66 0 0 chr3 3347403 3347706 -214689452 - AluY SINE Alu -8 303 1 244 376 60 8 chr3 3347816 3347933 -214689225 + L2 LINE L2 3191 3313 0 233 274 140 18 chr3 3349000 3349057 -214688101 + L1MC/D LINE L1 5352 5401 -2407 1729 149 72 0 chr3 3349057 3349333 -214687825 - AluSx SINE Alu -16 296 1 233 274 140 18 chr3 3349333 3349439 -214687719 + L1MC/D LINE L1 5401 5535 -2273 475 297 0 0 chr3 3349611 3349722 -214687436 - MER81 DNA DNA 0 114 4 714 254 215 0 chr3 3350441 3350646 -214686512 + MIR SINE MIR 6 254 -8 388 352 49 6 chr3 3350914 3351076 -214686082 + MIR SINE MIR 81 249 -13 427 315 34 0 chr3 3351378 3351524 -214685634 + MER117 DNA MER1_type 11 161 -36 220 214 18 18 chr3 3351571 3351627 -214685531 + (TG)n Simple_repeat Simple_repeat 1 56 0 479 233 302 0 chr3 3351671 3351843 -214685315 - MIR SINE MIR -10 252 29 2303 67 35 0 chr3 3351845 3352128 -214685030 - AluY SINE Alu -18 293 1 1877 154 3 13 chr3 3352901 3353212 -214683946 + AluJb SINE Alu 1 308 -4 432 288 113 19 chr3 3353729 3353941 -214683217 + HAL1 LINE L1 434 665 -1842 383 306 89 0 chr3 3354127 3354408 -214682750 + HAL1 LINE L1 984 1289 -1218 1643 249 190 30 chr3 3354412 3355239 -214681919 + HAL1 LINE L1 1340 2298 -209 212 292 79 22 chr3 3355759 3355848 -214681310 - MIR3 SINE MIR -25 183 90 2125 141 13 0 chr3 3355979 3356285 -214680873 + AluJo SINE Alu 1 310 -2 1474 206 109 43 chr3 3356638 3357144 -214680014 + MER90 LTR ERV1 70 608 -6 474 204 160 18 chr3 3357751 3357976 -214679182 + MER112 DNA MER1_type 4 260 0 1705 157 17 30 chr3 3359361 3359660 -214677498 - AluJb SINE Alu -17 295 1 226 229 0 0 chr3 3360172 3360233 -214676925 + T-rich Low_complexity Low_complexity 1 61 0 7634 14 0 0 chr3 3360235 3361468 -214675690 - L1HS LINE L1 0 6155 4923 688 129 103 189 chr3 3361704 3361838 -214675320 + MER33 DNA MER1_type 1 145 -2440 1734 167 20 7 chr3 3361838 3362132 -214675026 - AluJb SINE Alu -14 298 1 688 129 103 189 chr3 3362132 3362347 -214674811 + MER33 DNA MER1_type 145 320 -4 534 236 48 36 chr3 3362574 3362739 -214674419 - MER5B DNA MER1_type -1 177 11 272 375 17 0 chr3 3363034 3363154 -214674004 + MIR SINE MIR 8 129 -133 860 131 77 0 chr3 3363343 3363473 -214673685 - FRAM SINE Alu -17 159 20 558 109 148 10 chr3 3363522 3363623 -214673535 + FLAM_C SINE Alu 5 119 -24 23 0 0 0 chr3 3363628 3363651 -214673507 + AT_rich Low_complexity Low_complexity 1 23 0 4312 90 17 21 chr3 3364122 3364316 -214672842 + PABL_A LTR ERV1 1 194 -466 2223 94 0 7 chr3 3364316 3364613 -214672545 - AluSx SINE Alu -17 295 1 4312 90 17 21 chr3 3364613 3365072 -214672086 + PABL_A LTR ERV1 194 651 -9 1772 100 37 23 chr3 3366679 3366979 -214670179 - AluSq SINE Alu -9 304 1 888 210 189 7 chr3 3367537 3367751 -214669407 + MER2 DNA MER2_type 1 283 -61 2320 94 0 0 chr3 3367751 3368050 -214669108 - AluSx SINE Alu -9 303 5 888 210 189 7 chr3 3368050 3368126 -214669032 + MER2 DNA MER2_type 283 344 0 272 70 23 0 chr3 3368126 3368169 -214668989 + (GA)n Simple_repeat Simple_repeat 1 44 0 2580 259 52 18 chr3 3368197 3369227 -214667931 + L1ME1 LINE L1 3292 4356 -1790 1546 193 14 14 chr3 3369329 3369614 -214667544 + AluJb SINE Alu 1 285 -27 22 0 0 0 chr3 3369614 3369636 -214667522 + AT_rich Low_complexity Low_complexity 1 22 0 2461 234 26 51 chr3 3369636 3369676 -214667482 + L1ME1 LINE L1 5403 5443 -723 2069 131 7 0 chr3 3369676 3369967 -214667191 - AluSg SINE Alu -17 293 1 2461 234 26 51 chr3 3369967 3370470 -214666688 + L1ME1 LINE L1 5443 5957 -209 2198 112 0 0 chr3 3370470 3370764 -214666394 + AluSg SINE Alu 1 294 -16 2461 234 26 51 chr3 3370764 3370947 -214666211 + L1ME1 LINE L1 5957 6111 -55 1827 140 153 42 chr3 3370947 3371020 -214666138 - MSTA LTR MaLR 0 428 365 2414 49 0 30 chr3 3371020 3371325 -214665833 + AluY SINE Alu 1 296 -15 1827 140 153 42 chr3 3371325 3371636 -214665522 - MSTA LTR MaLR -63 365 1 2461 234 26 51 chr3 3371636 3371685 -214665473 + L1ME1 LINE L1 6111 6160 -6 1754 139 58 41 chr3 3372151 3372446 -214664712 + AluSx SINE Alu 1 300 -12 180 77 0 0 chr3 3372785 3372811 -214664347 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 561 278 131 0 chr3 3372886 3373062 -214664096 - MIR SINE MIR -32 230 32 609 178 8 0 chr3 3373402 3373520 -214663638 - MLT1D LTR MaLR 0 505 387 2271 104 0 0 chr3 3373729 3374027 -214663131 - AluSx SINE Alu -3 309 12 1549 192 3 36 chr3 3374250 3374558 -214662600 + AluJo SINE Alu 1 298 -14 870 168 0 0 chr3 3374602 3374727 -214662431 + AluJb SINE Alu 1 125 -187 1864 158 18 0 chr3 3375588 3375872 -214661286 + AluJo SINE Alu 1 289 -23 480 62 37 0 chr3 3375882 3375963 -214661195 + (TA)n Simple_repeat Simple_repeat 1 84 0 217 144 22 0 chr3 3376234 3376280 -214660878 + MIR SINE MIR 99 146 -62 2014 137 0 22 chr3 3376395 3376710 -214660448 + AluSx SINE Alu 3 310 -2 4037 183 19 25 chr3 3376991 3377871 -214659287 - L1MB8 LINE L1 0 6178 5304 849 199 6 0 chr3 3377874 3378030 -214659128 - FRAM SINE Alu 0 40 1 1811 181 57 53 chr3 3378032 3378160 -214658998 - L1MB8 LINE L1 -830 5316 5190 2045 125 4 4 chr3 3378160 3378462 -214658696 - AluSx SINE Alu 0 302 1 1811 181 57 53 chr3 3378462 3378587 -214658571 - L1MB8 LINE L1 -956 5190 5067 2273 110 0 10 chr3 3378587 3378896 -214658262 + AluSx SINE Alu 6 311 -1 1811 181 57 53 chr3 3378896 3379165 -214657993 - L1MB8 LINE L1 -1079 5067 4789 248 172 16 141 chr3 3379586 3379714 -214657444 + MLT1H LTR MaLR 438 549 0 381 249 115 91 chr3 3379802 3379860 -214657298 - L1ME4a LINE L1 -232 5889 5834 1891 135 7 0 chr3 3379860 3380141 -214657017 + AluSg SINE Alu 13 295 -15 381 249 115 91 chr3 3380141 3380335 -214656823 - L1ME4a LINE L1 -287 5834 5631 2148 102 10 7 chr3 3380582 3380876 -214656282 + AluSq SINE Alu 1 295 -18 185 0 0 39 chr3 3380981 3381007 -214656151 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 217 207 138 17 chr3 3381088 3381146 -214656012 + L2 LINE L2 3246 3310 -3 2240 100 0 3 chr3 3381166 3381455 -214655703 + AluSx SINE Alu 1 288 -24 268 284 0 68 chr3 3384250 3384338 -214652820 - L2 LINE L2 -23 3249 3168 213 39 0 0 chr3 3385524 3385550 -214651608 + (TTG)n Simple_repeat Simple_repeat 2 27 0 257 385 57 0 chr3 3386747 3386869 -214650289 + MIR SINE MIR 21 149 -113 964 186 9 24 chr3 3388456 3388597 -214648561 + MER3 DNA MER1_type 2 141 -68 1953 143 7 7 chr3 3388597 3388884 -214648274 + AluSx SINE Alu 1 287 -25 964 186 9 24 chr3 3388884 3388952 -214648206 + MER3 DNA MER1_type 141 208 -1 269 269 86 30 chr3 3389046 3389280 -214647878 + L1ME4a LINE L1 5873 6119 -2 665 224 39 86 chr3 3389367 3389622 -214647536 + MER112 DNA MER1_type 6 248 -12 1274 124 0 43 chr3 3389753 3389939 -214647219 + AluSx SINE Alu 1 178 -134 383 246 53 18 chr3 3390602 3390716 -214646442 + MIR3 SINE MIR 14 131 -77 1871 146 35 0 chr3 3391740 3391911 -214645247 - AluSx SINE Alu -14 298 112 414 0 0 0 chr3 3391911 3391957 -214645201 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1871 146 35 0 chr3 3391957 3392073 -214645085 - AluSx SINE Alu -200 112 1 253 109 455 0 chr3 3392462 3392517 -214644641 + MADE1 DNA Mariner 1 80 0 2193 100 7 0 chr3 3392968 3393279 -214643879 + AluSx SINE Alu 1 313 0 1918 167 0 0 chr3 3393298 3393586 -214643572 - AluJb SINE Alu -19 293 6 950 117 7 15 chr3 3393586 3393723 -214643435 - AluJb SINE Alu -176 136 1 294 320 58 19 chr3 3393881 3394037 -214643121 - MIR3 SINE MIR -8 200 39 2021 140 10 0 chr3 3394233 3394526 -214642632 + AluSx SINE Alu 1 296 -16 191 333 0 43 chr3 3395101 3395170 -214641988 - L3 LINE CR1 -4 1573 1508 1011 190 20 20 chr3 3395229 3395429 -214641729 - MER20 DNA MER1_type -19 200 1 689 222 102 9 chr3 3395869 3396085 -214641073 + MIR SINE MIR 14 249 -13 183 310 113 0 chr3 3396434 3396505 -214640653 + MIR SINE MIR 29 107 -155 2466 77 0 3 chr3 3396640 3396950 -214640208 - AluY SINE Alu -2 309 1 225 253 24 60 chr3 3397054 3397137 -214640021 - MIR SINE MIR -81 127 48 2145 116 3 16 chr3 3397925 3398235 -214638923 + AluSx SINE Alu 4 309 -3 3383 163 28 2 chr3 3398236 3398842 -214638316 + L1MB2 LINE L1 5550 6171 0 477 241 195 0 chr3 3398897 3399071 -214638087 - MIR SINE MIR -6 256 49 481 274 108 25 chr3 3399405 3399646 -214637512 - MER5C DNA MER1_type -43 281 21 196 348 38 52 chr3 3399838 3400048 -214637110 - L2 LINE L2 -544 2770 2564 247 307 44 18 chr3 3400873 3400987 -214636171 + MER69A DNA AcHobo 1 117 -60 1774 191 68 28 chr3 3400992 3401189 -214635969 - L1MD2 LINE L1 -1 6358 6170 2276 110 3 0 chr3 3401189 3401499 -214635659 - AluSx SINE Alu -1 311 1 1774 191 68 28 chr3 3401499 3401700 -214635458 - L1MD2 LINE L1 -189 6170 5944 309 245 96 11 chr3 3401700 3401794 -214635364 + MER69A DNA AcHobo 76 177 0 2556 57 0 22 chr3 3402076 3402394 -214634764 + AluY SINE Alu 1 311 0 22 0 0 0 chr3 3402783 3402805 -214634353 + AT_rich Low_complexity Low_complexity 1 22 0 186 310 0 69 chr3 3402857 3402944 -214634214 - MIR SINE MIR -149 113 33 1899 72 103 4 chr3 3403040 3403302 -214633856 + AluSc SINE Alu 5 292 -17 263 217 0 17 chr3 3403656 3403716 -214633442 + MER91 DNA MER1_type 81 139 -1 208 235 123 0 chr3 3404601 3404682 -214632476 + MIR3 SINE MIR 102 192 -16 3399 119 12 2 chr3 3405725 3406231 -214630927 - L1PB3 LINE L1 0 6154 5644 820 84 0 19 chr3 3406271 3406378 -214630780 - FLAM_A SINE Alu -16 126 22 305 265 34 23 chr3 3408129 3408258 -214628900 - MIR SINE MIR -58 150 20 480 218 247 6 chr3 3408708 3408878 -214628280 - MIR SINE MIR -1 261 51 1904 128 16 26 chr3 3408878 3409184 -214627974 - AluSx SINE Alu -9 303 1 201 211 0 0 chr3 3409485 3409537 -214627621 + (CA)n Simple_repeat Simple_repeat 1 52 0 231 254 140 18 chr3 3410174 3410288 -214626870 - MIR3 SINE MIR -80 128 1 1824 185 0 3 chr3 3411955 3412253 -214624905 + AluJo SINE Alu 1 297 -15 582 250 152 10 chr3 3412565 3412769 -214624389 + MIR SINE MIR 16 248 -14 1991 140 13 0 chr3 3412890 3413197 -214623961 - AluSx SINE Alu -1 311 1 240 234 261 0 chr3 3413300 3413411 -214623747 - MIR3 SINE MIR -29 179 40 279 315 109 25 chr3 3413512 3413750 -214623408 - L2 LINE L2 -825 2489 2232 2320 106 0 3 chr3 3414097 3414399 -214622759 - AluSx SINE Alu -11 301 1 320 316 18 9 chr3 3414895 3415009 -214622149 + L2 LINE L2 3158 3272 0 1903 145 3 3 chr3 3415183 3415465 -214621693 - AluSx SINE Alu -30 282 1 890 45 0 0 chr3 3415539 3415649 -214621509 + L1PA4 LINE L1 6046 6155 0 355 283 145 0 chr3 3416101 3416239 -214620919 - MIR SINE MIR -65 197 40 2090 130 0 3 chr3 3417053 3417346 -214619812 + AluSg SINE Alu 3 294 -16 2222 114 23 0 chr3 3417448 3417747 -214619411 + AluJb SINE Alu 1 306 -6 826 169 0 0 chr3 3418331 3418461 -214618697 - FLAM_A SINE Alu -1 132 3 264 350 57 13 chr3 3418544 3418701 -214618457 + MIR3 SINE MIR 45 208 0 1951 223 47 10 chr3 3418859 3419366 -214617792 - L1M4 LINE L1 -1208 4938 4413 1221 181 42 0 chr3 3419384 3419599 -214617559 - MER58A DNA MER1_type 0 224 1 2168 98 28 0 chr3 3420027 3420313 -214616845 - AluSx SINE Alu -18 294 1 1697 195 7 0 chr3 3421061 3421353 -214615805 + AluJb SINE Alu 1 294 -18 216 0 0 0 chr3 3421354 3421378 -214615780 + (CA)n Simple_repeat Simple_repeat 2 25 0 680 149 79 0 chr3 3421474 3421588 -214615570 - FLAM_C SINE Alu -19 124 2 201 386 30 0 chr3 3421702 3421803 -214615355 + L2 LINE L2 3169 3272 0 257 267 150 0 chr3 3421868 3421988 -214615170 + L1ME LINE L1 5705 5842 -279 2520 87 0 0 chr3 3422050 3422359 -214614799 + AluSg SINE Alu 1 309 -1 22 0 0 0 chr3 3422520 3422542 -214614616 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr3 3423274 3423304 -214613854 + (GA)n Simple_repeat Simple_repeat 1 30 0 1636 169 6 49 chr3 3424320 3424645 -214612513 - AluJo SINE Alu -1 311 1 768 209 12 6 chr3 3424681 3424844 -214612314 - MER5A DNA MER1_type -25 164 1 322 292 93 83 chr3 3425244 3425545 -214611613 + L2 LINE L2 2960 3263 -9 183 302 52 10 chr3 3426672 3426768 -214610390 + L2 LINE L2 2563 2662 -652 2163 101 0 3 chr3 3427147 3427443 -214609715 - AluSc SINE Alu -14 295 1 1759 128 7 40 chr3 3428069 3428366 -214608792 - AluJb SINE Alu -13 299 13 845 223 36 16 chr3 3428366 3428559 -214608599 - MER58A DNA MER1_type -9 215 19 287 246 144 8 chr3 3428810 3428928 -214608230 + L2 LINE L2 3170 3303 -10 2349 98 7 0 chr3 3429198 3429505 -214607653 + AluSp SINE Alu 1 309 -4 537 188 240 19 chr3 3429765 3429919 -214607239 + MER53 DNA DNA 2 189 0 213 121 0 0 chr3 3430097 3430130 -214607028 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 267 315 63 14 chr3 3430168 3430311 -214606847 + MIR SINE MIR 12 161 -101 184 358 0 0 chr3 3430461 3430528 -214606630 + L2 LINE L2 3205 3271 -1 2272 128 0 0 chr3 3430797 3431102 -214606056 - AluSg SINE Alu -5 305 1 449 222 104 22 chr3 3433850 3433985 -214603173 - L2 LINE L2 -5 3267 3122 2119 90 54 0 chr3 3434352 3434630 -214602528 + AluSq SINE Alu 1 293 -20 24 96 0 0 chr3 3436374 3436447 -214600711 + AT_rich Low_complexity Low_complexity 1 73 0 521 275 6 25 chr3 3437182 3437342 -214599816 - MIR SINE MIR -72 190 34 322 295 25 0 chr3 3437937 3438059 -214599099 + L2 LINE L2 2199 2323 -991 872 225 69 23 chr3 3438069 3438331 -214598827 - L1MB4 LINE L1 0 6180 5907 303 250 70 20 chr3 3439496 3439596 -214597562 + MIR SINE MIR 81 185 -77 2038 140 7 0 chr3 3439605 3439905 -214597253 + AluSx SINE Alu 1 302 -10 245 246 33 0 chr3 3440438 3440499 -214596659 - MER5B DNA MER1_type 0 178 116 702 191 112 27 chr3 3440536 3440724 -214596434 + MER20 DNA MER1_type 16 219 0 1135 178 28 0 chr3 3440848 3441028 -214596130 - MER5A DNA MER1_type -2 187 3 1687 112 31 5 chr3 3441767 3441991 -214595167 + MER30 DNA MER1_type 1 230 0 613 255 28 0 chr3 3442009 3442154 -214595004 - MIR SINE MIR -87 175 27 181 286 71 51 chr3 3442145 3442156 -214595002 + MIR SINE MIR 27 36 -226 * 2360 99 3 0 chr3 3442156 3442458 -214594700 - AluSq SINE Alu -10 303 1 181 286 71 51 chr3 3442458 3442544 -214594614 + MIR SINE MIR 36 126 -136 620 248 62 6 chr3 3442578 3442739 -214594419 + Charlie8 DNA MER1_type 11 180 -2237 540 208 53 52 chr3 3442740 3442916 -214594242 + MSTC LTR MaLR 1 180 -185 277 126 24 0 chr3 3442915 3442976 -214594182 + MSTB2 LTR MaLR 308 431 -26 * 298 280 156 53 chr3 3443141 3443366 -214593792 + L2 LINE L2 2916 3163 -150 606 252 63 15 chr3 3443387 3443557 -214593601 + MIR SINE MIR 13 196 -66 2223 120 0 0 chr3 3443557 3443858 -214593300 + AluSx SINE Alu 1 301 -11 606 252 63 15 chr3 3443858 3443893 -214593265 + MIR SINE MIR 196 228 -34 278 149 21 0 chr3 3443930 3443977 -214593181 + Charlie8 DNA MER1_type 1375 1422 -995 357 62 0 0 chr3 3444373 3444421 -214592737 + (CA)n Simple_repeat Simple_repeat 1 48 0 213 39 0 0 chr3 3444420 3444446 -214592712 + (GA)n Simple_repeat Simple_repeat 2 27 0 * 1225 222 108 7 chr3 3444456 3444753 -214592405 + MER2 DNA MER2_type 6 332 -13 25759 64 4 9 chr3 3444983 3448304 -214588854 - L1P LINE L1 -2831 3315 11 609 239 119 26 chr3 3448323 3448661 -214588497 + MLT1G LTR MaLR 153 588 -2 1775 152 20 10 chr3 3450962 3451258 -214585900 - AluJo SINE Alu -13 299 1 270 185 174 0 chr3 3451272 3451364 -214585794 - MER113 DNA MER1_type? -410 111 4 293 347 41 0 chr3 3451367 3451488 -214585670 - MIR3 SINE MIR -52 156 31 2240 91 3 3 chr3 3451995 3452282 -214584876 - AluSp SINE Alu -15 298 12 227 261 54 43 chr3 3454607 3454699 -214582459 + MIR SINE MIR 103 195 -67 1824 150 0 43 chr3 3456131 3456457 -214580701 - AluJb SINE Alu 0 312 1 180 200 0 60 chr3 3456475 3456525 -214580633 - MIR SINE MIR -106 156 110 1821 147 14 7 chr3 3457082 3457368 -214579790 + AluJo SINE Alu 1 288 -24 24 32 0 0 chr3 3457541 3457572 -214579586 + AT_rich Low_complexity Low_complexity 1 31 0 1968 144 7 0 chr3 3457612 3457911 -214579247 - AluJb SINE Alu -11 301 1 418 353 39 7 chr3 3458416 3458569 -214578589 - L2 LINE L2 0 3272 3115 282 311 49 8 chr3 3458617 3458739 -214578419 - L2 LINE L2 0 3313 3187 963 233 69 25 chr3 3463043 3463288 -214573870 - MIR SINE MIR 0 262 7 199 331 67 18 chr3 3463431 3463595 -214573563 + MIR SINE MIR 23 192 -67 216 285 89 32 chr3 3463818 3463885 -214573273 + MIR SINE MIR 132 194 -68 1420 186 0 36 chr3 3463885 3464133 -214573025 + MER8 DNA MER2_type 1 239 0 216 285 89 32 chr3 3464133 3464188 -214572970 + MIR SINE MIR 194 261 -1 825 211 35 30 chr3 3465545 3465744 -214571414 + MER105 DNA DNA 1 200 -4 225 327 71 9 chr3 3466326 3466460 -214570698 + MIR SINE MIR 37 177 -70 335 217 105 28 chr3 3467251 3467394 -214569764 - L1ME4a LINE L1 -1 6120 5967 23 33 0 0 chr3 3467588 3467618 -214569540 + AT_rich Low_complexity Low_complexity 1 30 0 206 238 16 0 chr3 3467931 3467994 -214569164 + (CAAAC)n Simple_repeat Simple_repeat 1 64 0 207 0 0 0 chr3 3468531 3468554 -214568604 + (T)n Simple_repeat Simple_repeat 1 23 0 423 168 140 19 chr3 3468900 3469007 -214568151 - MIR SINE MIR -40 222 103 1379 186 50 47 chr3 3470518 3470674 -214566484 - AluJo SINE Alu -10 302 143 1562 186 0 62 chr3 3470674 3470997 -214566161 - AluSx SINE Alu -9 303 1 1379 186 50 47 chr3 3470997 3471141 -214566017 - AluJo SINE Alu -169 143 1 1554 292 179 16 chr3 3471565 3472371 -214564787 + L3 LINE CR1 552 1488 -89 465 220 60 22 chr3 3472953 3473097 -214564061 - L1MD3 LINE L1 -1 8040 7880 246 111 0 0 chr3 3473102 3473147 -214564011 + LTR66 LTR ERVL 395 439 -171 239 109 0 0 chr3 3473141 3473187 -214563971 - LTR66 LTR ERVL -171 439 394 * 252 200 0 0 chr3 3473206 3473266 -214563892 + (CA)n Simple_repeat Simple_repeat 1 60 0 2703 231 46 34 chr3 3473274 3473344 -214563814 - L1MC4 LINE L1 -682 7360 7292 1814 153 43 10 chr3 3473344 3473645 -214563513 + AluSx SINE Alu 1 311 -1 2703 231 46 34 chr3 3473645 3474288 -214562870 - L1MC4 LINE L1 -750 7292 6638 289 206 29 49 chr3 3475076 3475178 -214561980 - L1MEd LINE L1 -5354 765 666 360 0 0 0 chr3 3478851 3478891 -214558267 + (TG)n Simple_repeat Simple_repeat 2 41 0 317 320 28 56 chr3 3479631 3479809 -214557349 + MIR SINE MIR 46 218 -44 2224 118 3 0 chr3 3479948 3480252 -214556906 - AluSq SINE Alu -8 305 1 1562 127 0 5 chr3 3480274 3480495 -214556663 + AluSg/x SINE Alu 87 306 -6 218 260 0 0 chr3 3480515 3480565 -214556593 + MIR SINE MIR 213 262 0 291 224 0 15 chr3 3480588 3480655 -214556503 + L2 LINE L2 2750 2815 -499 336 343 0 10 chr3 3480817 3480916 -214556242 + MIR SINE MIR 13 110 -152 306 153 0 0 chr3 3481002 3481061 -214556097 + (CAT)n Simple_repeat Simple_repeat 2 60 0 1517 278 157 41 chr3 3482467 3483206 -214553952 + HAL1 LINE L1 85 949 -1558 2579 34 0 0 chr3 3483206 3483501 -214553657 + AluY SINE Alu 1 295 -16 1517 278 157 41 chr3 3483501 3483664 -214553494 + HAL1 LINE L1 949 1092 -1415 490 88 25 38 chr3 3484108 3484188 -214552970 - MADE1 DNA Mariner 0 80 2 196 301 68 45 chr3 3486119 3486252 -214550906 - MIR SINE MIR -118 144 9 239 286 164 35 chr3 3486579 3486750 -214550408 - L2 LINE L2 -1 3312 3120 2226 62 42 10 chr3 3486763 3487051 -214550107 + AluY SINE Alu 1 297 -14 1496 166 16 55 chr3 3487087 3487394 -214549764 + MLT1A1 LTR MaLR 13 307 -58 1727 190 11 39 chr3 3487402 3487793 -214549365 + MLT-int LTR MaLR 316 709 -662 351 179 15 15 chr3 3487900 3487967 -214549191 + MLT-int LTR MaLR 676 742 -993 269 266 273 7 chr3 3488262 3488416 -214548742 - MIR SINE MIR -65 197 3 2668 136 4 87 chr3 3488824 3488879 -214548279 - L1MB7 LINE L1 -19 6165 6107 1956 142 0 32 chr3 3488879 3489188 -214547970 + AluJb SINE Alu 1 299 -13 2668 136 4 87 chr3 3489188 3489216 -214547942 - L1MB7 LINE L1 -77 6107 6078 309 26 0 0 chr3 3489216 3489254 -214547904 + (T)n Simple_repeat Simple_repeat 1 38 0 2668 136 4 87 chr3 3489254 3489662 -214547496 - L1MB7 LINE L1 -106 6078 5680 274 277 36 24 chr3 3490232 3490315 -214546843 - MIR3 SINE MIR -3 205 122 209 171 0 0 chr3 3490480 3490515 -214546643 + CT-rich Low_complexity Low_complexity 2 36 0 198 103 0 0 chr3 3492043 3492072 -214545086 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 192 354 21 42 chr3 3492262 3492358 -214544800 - L3 LINE CR1 -20 1557 1464 760 298 188 51 chr3 3492391 3493115 -214544043 - L3 LINE CR1 -184 1393 543 1129 158 50 180 chr3 3493115 3493532 -214543626 + MLT1A1 LTR MaLR 3 365 0 760 298 188 51 chr3 3493532 3493628 -214543530 - L3 LINE CR1 -1034 543 461 247 364 19 31 chr3 3494206 3494368 -214542790 + L2 LINE L2 2897 3056 -216 575 310 6 18 chr3 3494444 3494615 -214542543 - MER5A DNA MER1_type -5 184 16 202 232 24 24 chr3 3496880 3496962 -214540196 + (TTATA)n Simple_repeat Simple_repeat 2 83 0 291 324 94 25 chr3 3496980 3497292 -214539866 - L1ME LINE L1 -392 5729 5395 261 83 0 0 chr3 3498313 3498349 -214538809 + (TA)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chr3 3498571 3498599 -214538559 + AT_rich Low_complexity Low_complexity 1 28 0 369 161 49 0 chr3 3499251 3499332 -214537826 - MER58 DNA MER1_type -16 2404 2320 2260 95 0 7 chr3 3499347 3499643 -214537515 + AluSq SINE Alu 5 298 -15 1113 208 47 7 chr3 3499643 3499912 -214537246 - MER58 DNA MER1_type -61 280 1 335 308 23 39 chr3 3499922 3500052 -214537106 - MER5A DNA MER1_type -5 184 57 331 224 112 43 chr3 3501853 3502014 -214535144 + MER113 DNA MER1_type? 4 175 -346 21 0 0 0 chr3 3502047 3502068 -214535090 + AT_rich Low_complexity Low_complexity 1 21 0 193 284 60 0 chr3 3502690 3502757 -214534401 - MIR SINE MIR -26 236 166 515 271 202 10 chr3 3502782 3502985 -214534173 - MIR SINE MIR -10 252 11 254 240 280 27 chr3 3503589 3503739 -214533419 + MIR3 SINE MIR 10 197 -11 786 313 75 30 chr3 3505469 3506145 -214531013 + L2 LINE L2 2601 3306 -7 341 398 29 5 chr3 3506486 3506692 -214530466 + MIR SINE MIR 28 238 -24 2097 146 0 0 chr3 3506728 3507030 -214530128 + AluJb SINE Alu 1 302 -10 233 351 26 0 chr3 3508313 3508390 -214528768 + MIR SINE MIR 28 106 -156 854 198 99 15 chr3 3508404 3508606 -214528552 - MER20 DNA MER1_type 0 219 1 23 68 0 0 chr3 3508850 3508894 -214528264 + AT_rich Low_complexity Low_complexity 1 44 0 906 241 97 28 chr3 3509160 3509376 -214527782 + MIR SINE MIR 2 232 -30 2614 48 3 0 chr3 3509698 3510007 -214527151 - AluY SINE Alu 0 311 2 694 291 135 35 chr3 3510202 3510549 -214526609 + MLT1K LTR MaLR 134 515 -73 1779 156 28 3 chr3 3510890 3511179 -214525979 - AluSx SINE Alu -16 296 1 3148 135 23 72 chr3 3511414 3511478 -214525680 + LTR9 LTR ERV1 1 67 -545 2512 50 0 0 chr3 3511478 3511779 -214525379 - AluY SINE Alu -10 301 1 3148 135 23 72 chr3 3511779 3512357 -214524801 + LTR9 LTR ERV1 67 612 0 336 333 8 0 chr3 3513360 3513483 -214523675 - Tigger8 DNA MER2_type -13 653 530 2619 153 109 27 chr3 3513510 3514071 -214523087 + LTR36 LTR ERV1 1 607 -4 481 315 35 0 chr3 3514353 3514585 -214522573 + MER102b DNA MER1_type 102 341 0 1555 205 58 54 chr3 3514749 3515212 -214521946 - MLT1C LTR MaLR -1 466 2 534 325 73 17 chr3 3517392 3517626 -214519532 - MIR SINE MIR -14 248 2 454 273 66 50 chr3 3518353 3518551 -214518607 + MIR SINE MIR 41 241 -21 777 266 92 17 chr3 3518658 3519015 -214518143 + MER113 DNA MER1_type? 136 519 -2 243 175 0 0 chr3 3520584 3520641 -214516517 + (TG)n Simple_repeat Simple_repeat 1 57 0 304 148 49 37 chr3 3521582 3521631 -214515527 + L1MC4 LINE L1 6616 6663 -1379 1695 113 118 136 chr3 3521631 3521855 -214515303 + Tigger2a DNA MER2_type 1 228 -2480 2175 117 3 0 chr3 3521855 3522154 -214515004 + AluSx SINE Alu 1 300 -12 1695 113 118 136 chr3 3522154 3522196 -214514962 + Tigger2a DNA MER2_type 228 269 -2439 1779 159 10 17 chr3 3522196 3522492 -214514666 + AluJb SINE Alu 1 294 -18 1695 113 118 136 chr3 3522492 3522551 -214514607 + Tigger2a DNA MER2_type 269 328 -2380 1596 183 7 18 chr3 3522551 3522830 -214514328 + AluJo SINE Alu 7 282 -30 233 29 0 29 chr3 3522836 3522871 -214514287 + (CAA)n Simple_repeat Simple_repeat 2 35 0 1695 113 118 136 chr3 3522871 3522978 -214514180 + Tigger2a DNA MER2_type 333 434 0 304 148 49 37 chr3 3522978 3523009 -214514149 + L1MC4 LINE L1 6663 6697 -1345 212 313 0 38 chr3 3523239 3523319 -214513839 - L2 LINE L2 -7 3265 3189 966 280 56 41 chr3 3523352 3523401 -214513757 + MLT1K LTR MaLR 3 50 -538 216 0 0 0 chr3 3523401 3523425 -214513733 + (TAA)n Simple_repeat Simple_repeat 2 25 0 966 280 56 41 chr3 3523425 3523768 -214513390 + MLT1K LTR MaLR 50 401 -187 444 174 0 83 chr3 3523795 3523850 -214513308 + MLT1K LTR MaLR 478 519 -69 527 185 0 22 chr3 3523850 3523985 -214513173 + L1MB8 LINE L1 6046 6177 -1 444 174 0 83 chr3 3523985 3524050 -214513108 + MLT1K LTR MaLR 519 588 0 228 67 0 0 chr3 3524289 3524319 -214512839 + (TGG)n Simple_repeat Simple_repeat 1 30 0 4073 113 5 70 chr3 3525261 3525999 -214511159 + LTR8 LTR ERV1 2 691 0 2099 177 37 0 chr3 3526165 3526567 -214510591 - L1MA3 LINE L1 -2 6303 5887 228 350 133 21 chr3 3527155 3527389 -214509769 - L2 LINE L2 -450 2864 2605 842 203 35 5 chr3 3527393 3527590 -214509568 - MER3 DNA MER1_type -4 205 3 213 296 159 0 chr3 3527945 3528033 -214509125 + L2 LINE L2 3212 3313 0 187 367 17 0 chr3 3528108 3528168 -214508990 + MIR SINE MIR 78 138 -70 418 290 168 0 chr3 3528298 3528453 -214508705 + MER5A DNA MER1_type 9 189 0 508 254 56 0 chr3 3528867 3528993 -214508165 - L2 LINE L2 -3 3310 3178 1006 277 80 58 chr3 3529018 3529516 -214507642 - L2 LINE L2 0 3313 2805 642 309 57 0 chr3 3529812 3530006 -214507152 + L3 LINE CR1 914 1118 -459 255 284 20 20 chr3 3530436 3530538 -214506620 + LTR67 LTR ERVL 449 550 -7 307 202 46 46 chr3 3531527 3531636 -214505522 - MLT1H LTR MaLR 0 549 441 2661 33 0 0 chr3 3531689 3531990 -214505168 - AluY SINE Alu -9 302 2 27 0 0 0 chr3 3533358 3533385 -214503773 + AT_rich Low_complexity Low_complexity 1 27 0 3195 167 13 0 chr3 3534951 3535503 -214501655 + L1PA16 LINE L1 5607 6165 -1 3959 153 27 6 chr3 3535503 3536321 -214500837 + L1MA9 LINE L1 5356 6290 -22 3319 172 30 6 chr3 3536466 3537123 -214500035 - L1MB3 LINE L1 -2 6181 5509 595 339 68 24 chr3 3537165 3537534 -214499624 + MLT1K LTR MaLR 24 408 -180 212 193 70 35 chr3 3539020 3539077 -214498081 + L2 LINE L2 3255 3313 0 811 325 83 32 chr3 3539188 3539715 -214497443 - L2 LINE L2 -938 2376 1823 338 367 80 15 chr3 3539846 3540045 -214497113 + MIR SINE MIR 32 243 -19 180 194 194 0 chr3 3540554 3540590 -214496568 - MIR SINE MIR -102 106 64 2023 130 14 43 chr3 3541399 3541746 -214495412 + MER1B DNA MER1_type 1 337 0 519 237 101 0 chr3 3541821 3541960 -214495198 - MIR SINE MIR -38 224 72 437 319 14 28 chr3 3541958 3542102 -214495056 - L2 LINE L2 -4 3309 3168 * 658 313 70 10 chr3 3543653 3543984 -214493174 - L2 LINE L2 -218 3095 2740 599 185 110 153 chr3 3544063 3544409 -214492749 - MER46C DNA MER2_type -6 332 2 537 308 49 57 chr3 3545649 3545933 -214491225 - Charlie8 DNA MER1_type -1964 453 171 1875 170 3 10 chr3 3545933 3546245 -214490913 + AluJo SINE Alu 1 310 -2 537 308 49 57 chr3 3546245 3546346 -214490812 - Charlie8 DNA MER1_type -2246 171 71 187 130 22 22 chr3 3547297 3547343 -214489815 + CT-rich Low_complexity Low_complexity 4 49 0 684 333 40 17 chr3 3547842 3548193 -214488965 + LTR16A LTR ERVL 86 444 -6 1848 110 0 0 chr3 3549062 3549307 -214487851 + AluSc SINE Alu 46 290 -19 279 71 0 0 chr3 3549307 3549349 -214487809 + (TA)n Simple_repeat Simple_repeat 2 43 0 276 194 250 8 chr3 3550096 3550220 -214486938 - MER103 DNA DNA -11 155 2 368 277 69 31 chr3 3550771 3550901 -214486257 - L2 LINE L2 -1 3271 3137 634 314 206 31 chr3 3551182 3551768 -214485390 - L2 LINE L2 -589 2725 2037 528 249 76 15 chr3 3552930 3553127 -214484031 + MER63A DNA MER1_type 2 210 0 436 295 18 48 chr3 3554406 3554572 -214482586 + MIR SINE MIR 36 196 -66 1434 208 20 35 chr3 3555895 3556241 -214480917 - MER58B DNA MER1_type 0 341 1 369 362 22 26 chr3 3556244 3556473 -214480685 - L2 LINE L2 -342 2972 2745 343 344 38 13 chr3 3556477 3556634 -214480524 - MER5A DNA MER1_type -5 184 24 199 260 19 115 chr3 3557440 3557544 -214479614 - L2 LINE L2 -656 2658 2565 513 126 54 18 chr3 3559344 3559455 -214477703 + MER4C LTR ERV1 2 116 -349 458 231 41 123 chr3 3559513 3559817 -214477341 + MER4C LTR ERV1 125 232 -233 2319 61 0 0 chr3 3559817 3560138 -214477020 + AluY SINE Alu 1 321 0 458 231 41 123 chr3 3560138 3560347 -214476811 + MER4C LTR ERV1 232 457 -8 914 173 62 6 chr3 3560353 3560532 -214476626 + MLT1D LTR MaLR 257 445 -60 2521 59 0 3 chr3 3560537 3560843 -214476315 - AluY SINE Alu -6 305 1 302 256 84 116 chr3 3560920 3560991 -214476167 - L2 LINE L2 -94 3219 3147 1587 195 30 10 chr3 3560991 3561117 -214476041 + AluJo SINE Alu 1 123 -189 213 39 0 0 chr3 3561117 3561143 -214476015 + (CAAAA)n Simple_repeat Simple_repeat 4 29 0 1587 195 30 10 chr3 3561143 3561314 -214475844 + AluJo SINE Alu 123 304 -8 302 256 84 116 chr3 3561314 3561457 -214475701 - L2 LINE L2 -166 3147 3012 354 347 68 46 chr3 3561468 3561972 -214475186 + L2 LINE L2 2301 2815 -499 518 277 40 0 chr3 3563040 3563188 -214473970 + MLT1K LTR MaLR 23 176 -412 695 261 43 34 chr3 3563233 3563467 -214473691 + MLT1K LTR MaLR 342 577 -11 473 241 135 7 chr3 3564749 3564890 -214472268 + Charlie8 DNA MER1_type 88 246 -2171 968 229 129 25 chr3 3565369 3565732 -214471426 + MLT1I LTR MaLR 5 405 -4 373 305 58 29 chr3 3566723 3566897 -214470261 + L3 LINE CR1 1209 1387 -190 2040 110 28 3 chr3 3567375 3567666 -214469492 - AluSc SINE Alu -10 299 2 320 215 168 9 chr3 3567773 3567880 -214469278 - L1ME3 LINE L1 -8 6154 6031 208 258 186 31 chr3 3568103 3568200 -214468958 + L2 LINE L2 3175 3286 -27 2257 103 7 0 chr3 3570030 3570332 -214466826 + AluSx SINE Alu 1 304 -8 1663 188 11 7 chr3 3571604 3571891 -214465267 + AluJo SINE Alu 1 288 -24 268 250 0 98 chr3 3572151 3572243 -214464915 + MIR SINE MIR 164 246 -16 645 231 20 138 chr3 3572360 3572707 -214464451 - L1MD1 LINE L1 -10 6232 5927 300 328 61 15 chr3 3573405 3573536 -214463622 + L2 LINE L2 3176 3312 -1 2214 114 3 29 chr3 3573563 3573879 -214463279 - AluSx SINE Alu -4 308 1 822 174 28 90 chr3 3574225 3574437 -214462721 + MER63A DNA MER1_type 4 202 -8 500 290 168 0 chr3 3575378 3575533 -214461625 + MER5A DNA MER1_type 9 189 0 5096 66 21 27 chr3 3575585 3576745 -214460413 + SVA Other Other 2 1386 0 2436 186 58 9 chr3 3576753 3577292 -214459866 - L1MB2 LINE L1 -16 6155 5591 876 131 11 60 chr3 3577308 3577491 -214459667 + L1 LINE L1 4026 4199 -1947 * 5210 276 41 36 chr3 3577489 3577574 -214459584 - L1 LINE L1 -2129 3841 3758 2019 117 38 0 chr3 3577574 3577865 -214459293 + AluSx SINE Alu 1 302 -10 5210 276 41 36 chr3 3577865 3579760 -214457398 - L1 LINE L1 -2212 3758 1831 2194 126 0 7 chr3 3579760 3580070 -214457088 - AluSx SINE Alu -4 308 1 5210 276 41 36 chr3 3580070 3581488 -214455670 - L1 LINE L1 -4139 1831 421 554 292 118 55 chr3 3581793 3582122 -214455036 - L1 LINE L1 -5541 350 1 875 225 16 0 chr3 3583041 3583223 -214453935 + MER5A DNA MER1_type 2 186 -3 552 256 35 12 chr3 3583269 3583441 -214453717 - MER5B DNA MER1_type 0 178 3 710 264 50 14 chr3 3584320 3584540 -214452618 + LTR16A1 LTR ERVL 208 435 -22 2167 125 7 0 chr3 3585354 3585649 -214451509 - AluSx SINE Alu -15 297 1 2256 104 0 19 chr3 3586067 3586384 -214450774 - AluSq SINE Alu -2 311 1 27 0 0 0 chr3 3586440 3586467 -214450691 + AT_rich Low_complexity Low_complexity 1 27 0 2275 181 36 23 chr3 3586468 3586997 -214450161 - L1MA8 LINE L1 -4 6287 5752 1612 192 13 55 chr3 3587315 3587695 -214449463 + MLT1A1 LTR MaLR 1 364 -1 456 327 67 73 chr3 3589041 3589506 -214447652 - L2 LINE L2 -3 3269 2808 2040 201 57 9 chr3 3590885 3591324 -214445834 + LOR1b LTR ERV1 2 461 0 518 278 68 68 chr3 3592623 3593005 -214444153 + MLT1J1 LTR MaLR 65 446 0 1854 131 95 24 chr3 3595083 3595420 -214441738 + MER46B DNA MER2_type 1 236 0 208 215 0 46 chr3 3596175 3596240 -214440918 + L2 LINE L2 2201 2262 -1052 2358 76 3 0 chr3 3596885 3597187 -214439971 - AluY SINE Alu -8 303 1 1786 135 90 0 chr3 3597664 3597931 -214439227 + AluSx SINE Alu 1 291 -21 198 285 180 47 chr3 3598373 3598545 -214438613 - MIR SINE MIR -47 215 21 1515 189 40 15 chr3 3598678 3599079 -214438079 + Charlie1 DNA MER1_type 2343 2753 -8 341 336 79 21 chr3 3600009 3600149 -214437009 + MIR3 SINE MIR 58 205 -3 793 189 5 121 chr3 3600590 3600796 -214436362 + MER5A DNA MER1_type 7 188 -1 271 307 45 11 chr3 3600805 3600893 -214436265 + MIR SINE MIR 53 143 -119 1149 297 88 26 chr3 3600910 3601471 -214435687 + L2 LINE L2 2502 3127 -186 1734 128 75 11 chr3 3601471 3601758 -214435400 - AluSx SINE Alu 0 304 1 1149 297 88 26 chr3 3601758 3601958 -214435200 + L2 LINE L2 3127 3313 0 281 26 0 26 chr3 3607209 3607248 -214429910 + (TG)n Simple_repeat Simple_repeat 2 39 0 330 345 25 49 chr3 3607966 3608169 -214428989 + MIR SINE MIR 21 218 -44 2250 121 0 0 chr3 3608308 3608613 -214428545 - AluSp SINE Alu -8 305 1 848 202 91 0 chr3 3608616 3608814 -214428344 - L1MD2 LINE L1 -200 6159 5944 279 245 96 11 chr3 3608814 3608908 -214428250 + MER69 DNA AcHobo 2425 2526 0 2523 53 0 22 chr3 3609190 3609508 -214427650 + AluY SINE Alu 1 311 0 181 317 99 49 chr3 3609690 3609832 -214427326 + MIR SINE MIR 3 151 -111 22 0 0 0 chr3 3609898 3609920 -214427238 + AT_rich Low_complexity Low_complexity 1 22 0 212 315 23 62 chr3 3609955 3610084 -214427074 - MIR SINE MIR -75 133 2 1873 72 103 4 chr3 3610155 3610417 -214426741 + AluSc SINE Alu 5 292 -17 280 217 0 17 chr3 3610771 3610831 -214426327 + MER91 DNA MER1_type 81 139 -1 2507 52 3 0 chr3 3663265 3663574 -214373584 + AluY SINE Alu 1 310 -1 186 0 28 56 chr3 3663742 3663778 -214373380 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 415 344 56 25 chr3 3663920 3664307 -214372851 - L2 LINE L2 -209 3104 2612 * 1036 328 142 39 chr3 3664280 3665293 -214371865 + L3 LINE CR1 394 1511 -66 439 294 79 99 chr3 3665652 3666186 -214370972 - L2 LINE L2 -457 2857 2335 407 303 0 0 chr3 3666191 3666310 -214370848 + MER94 DNA DNA 16 134 0 427 279 146 84 chr3 3666325 3666921 -214370237 - L2 LINE L2 -1020 2294 1662 465 354 40 5 chr3 3667272 3667470 -214369688 - MIR SINE MIR -27 235 31 23 33 0 0 chr3 3669268 3669298 -214367860 + AT_rich Low_complexity Low_complexity 1 30 0 271 377 39 8 chr3 3670675 3670805 -214366353 + MIR3 SINE MIR 2 135 -73 901 220 10 0 chr3 3670811 3671011 -214366147 + MER3 DNA MER1_type 3 204 -5 1555 192 44 49 chr3 3671679 3672085 -214365073 - MER21B LTR ERV1 -57 806 403 337 298 0 19 chr3 3673309 3673413 -214363745 + MIR SINE MIR 48 149 -113 31 0 0 0 chr3 3673756 3673787 -214363371 + AT_rich Low_complexity Low_complexity 1 31 0 2335 66 3 7 chr3 3673832 3674136 -214363022 - AluY SINE Alu -4 307 5 384 278 61 0 chr3 3675057 3675172 -214361986 - MIR SINE MIR -59 203 82 2171 103 0 0 chr3 3676324 3676636 -214360522 + AluSg SINE Alu 1 312 0 559 200 42 18 chr3 3677103 3677268 -214359890 - MLT1A1 LTR MaLR -196 169 1 225 94 0 0 chr3 3678444 3678476 -214358682 + (CCA)n Simple_repeat Simple_repeat 1 32 0 183 80 0 0 chr3 3678696 3678721 -214358437 + (T)n Simple_repeat Simple_repeat 1 25 0 1716 167 0 33 chr3 3679103 3679408 -214357750 + AluJb SINE Alu 7 301 -11 674 306 51 4 chr3 3682955 3683190 -214353968 + MIR SINE MIR 9 254 -8 220 0 86 0 chr3 3683307 3683342 -214353816 + A-rich Low_complexity Low_complexity 2 39 0 1995 66 44 0 chr3 3683618 3683890 -214353268 - L1PA13 LINE L1 -19 6144 5861 2153 110 3 7 chr3 3683926 3684225 -214352933 + AluSx SINE Alu 1 298 -14 978 82 0 15 chr3 3684279 3684439 -214352719 + AluY SINE Alu 150 307 0 1044 113 0 0 chr3 3684539 3684681 -214352477 - THE1C LTR MaLR -233 142 1 423 224 96 8 chr3 3684682 3684807 -214352351 + MER103 DNA DNA 31 166 0 191 235 123 12 chr3 3685079 3685160 -214351998 + MIR SINE MIR 96 185 -77 28 53 0 40 chr3 3685371 3685446 -214351712 + AT_rich Low_complexity Low_complexity 1 72 0 23 68 0 0 chr3 3685773 3685817 -214351341 + AT_rich Low_complexity Low_complexity 1 44 0 2695 297 100 32 chr3 3686561 3686974 -214350184 - L2 LINE L2 -160 3153 2769 2148 154 83 8 chr3 3686974 3687371 -214349787 - MSTA LTR MaLR 0 428 2 2695 297 100 32 chr3 3687371 3688390 -214348768 - L2 LINE L2 -544 2769 1635 210 343 126 40 chr3 3688496 3688694 -214348464 + L2 LINE L2 2591 2805 -509 235 311 14 14 chr3 3689895 3689969 -214347189 - MIR SINE MIR -116 92 19 2490 46 7 0 chr3 3690034 3690341 -214346817 - AluY SINE Alu -2 309 1 221 116 0 23 chr3 3690355 3690398 -214346760 + (GGAGAA)n Simple_repeat Simple_repeat 3 44 0 1874 129 46 16 chr3 3693286 3693589 -214343569 - AluSx SINE Alu 0 312 1 568 234 22 7 chr3 3694437 3694574 -214342584 + MIR SINE MIR 86 224 -38 263 232 0 14 chr3 3695657 3695726 -214341432 + LTR67 LTR ERVL 481 548 -9 540 86 0 12 chr3 3695727 3695808 -214341350 + MADE1 DNA Mariner 1 80 0 262 188 31 31 chr3 3695888 3695952 -214341206 + MIR3 SINE MIR 98 161 -47 449 248 47 16 chr3 3696591 3696720 -214340438 - MER94 DNA DNA -1 133 1 2411 129 89 65 chr3 3697738 3697791 -214339367 + MER34 LTR ERV1 1 51 -491 1696 164 0 14 chr3 3697791 3698097 -214339061 - AluJo SINE Alu 0 302 1 2411 129 89 65 chr3 3698097 3698568 -214338590 + MER34 LTR ERV1 51 539 -3 349 293 67 7 chr3 3698611 3698761 -214338397 - L1ME3A LINE L1 -233 5920 5762 645 285 65 19 chr3 3698805 3699499 -214337659 - L1ME3A LINE L1 -536 5609 4884 522 278 109 24 chr3 3699612 3700259 -214336899 - L1MEd LINE L1 -4596 1714 971 314 363 64 58 chr3 3700334 3700711 -214336447 - L1MEd LINE L1 -5737 382 4 1990 146 0 0 chr3 3700791 3701085 -214336073 + AluSx SINE Alu 1 294 -18 565 196 0 0 chr3 3701088 3701180 -214335978 + AluS SINE Alu 1 92 -220 1500 120 43 0 chr3 3701281 3701529 -214335629 + AluSg/x SINE Alu 66 322 0 2288 91 3 0 chr3 3701539 3701824 -214335334 + AluSp SINE Alu 3 288 -25 226 0 59 0 chr3 3701833 3701867 -214335291 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 200 219 0 0 chr3 3702627 3702668 -214334490 - MER5C DNA MER1_type -6 318 278 323 224 37 112 chr3 3702813 3702947 -214334211 - MER5C DNA MER1_type -200 124 1 218 324 63 63 chr3 3703176 3703287 -214333871 + L2 LINE L2 3141 3251 -21 270 300 129 36 chr3 3703762 3703902 -214333256 + MIR3 SINE MIR 6 158 -50 1537 177 7 14 chr3 3703938 3704250 -214332908 + AluJo SINE Alu 1 310 0 2183 113 0 7 chr3 3704466 3704767 -214332391 + AluSg SINE Alu 1 299 -11 435 281 117 18 chr3 3705899 3706070 -214331088 + MER5A DNA MER1_type 1 188 -1 23 0 0 0 chr3 3707159 3707182 -214329976 + AT_rich Low_complexity Low_complexity 1 23 0 1712 122 90 41 chr3 3707859 3708202 -214328956 + MER46B DNA MER2_type 1 235 -1 305 279 108 18 chr3 3708223 3708334 -214328824 + MER5A DNA MER1_type 55 175 -14 1266 122 0 5 chr3 3708334 3708522 -214328636 - AluSg/x SINE Alu -10 302 116 2330 84 0 7 chr3 3708890 3709186 -214327972 - AluSq SINE Alu -19 294 1 783 186 0 0 chr3 3709217 3709341 -214327817 + FLAM_A SINE Alu 1 124 -9 797 258 18 35 chr3 3709505 3709734 -214327424 - MIR SINE MIR -6 256 32 297 0 0 0 chr3 3709980 3710013 -214327145 + (TG)n Simple_repeat Simple_repeat 1 33 0 495 286 97 49 chr3 3710073 3710219 -214326939 - L1ME2 LINE L1 -233 5931 5793 2279 89 3 7 chr3 3710219 3710523 -214326635 + AluSx SINE Alu 2 304 -8 495 286 97 49 chr3 3710523 3711008 -214326150 - L1ME2 LINE L1 -371 5793 5270 228 306 38 12 chr3 3711111 3711271 -214325887 - L1ME2 LINE L1 -1005 5141 4978 2212 226 72 14 chr3 3711314 3711886 -214325272 + MER82 DNA MER2_type 1 605 -48 349 307 0 8 chr3 3711952 3712079 -214325079 + (TAA)n Simple_repeat Simple_repeat 3 128 0 942 281 88 38 chr3 3712863 3713460 -214323698 - L2 LINE L2 0 3313 2702 2057 184 17 121 chr3 3713849 3714390 -214322768 + L1PB4 LINE L1 4562 5003 -1143 1678 99 0 5 chr3 3714390 3714613 -214322545 + AluSg/x SINE Alu 71 292 -18 2057 184 17 121 chr3 3714613 3714831 -214322327 + L1PB4 LINE L1 5003 5242 -904 2199 128 8 23 chr3 3714931 3715220 -214321938 + L1PB4 LINE L1 5396 5679 -477 1610 211 0 3 chr3 3715220 3715519 -214321639 + AluJb SINE Alu 1 298 -14 2199 128 8 23 chr3 3715519 3715618 -214321540 + L1PB4 LINE L1 5679 5778 -378 363 23 0 0 chr3 3715620 3715664 -214321494 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 238 167 0 28 chr3 3715665 3715737 -214321421 + (TA)n Simple_repeat Simple_repeat 1 70 0 1899 156 34 6 chr3 3715748 3716106 -214321052 + L1PB4 LINE L1 5789 6156 0 2373 93 3 0 chr3 3716410 3716712 -214320446 - AluSq SINE Alu -8 305 3 1792 174 24 0 chr3 3716739 3717037 -214320121 + AluJo SINE Alu 3 307 -5 2508 56 3 0 chr3 3718211 3718517 -214318641 + AluY SINE Alu 1 307 -4 1449 97 4 18 chr3 3718517 3718744 -214318414 + MER4E LTR ERV1 516 739 -27 1148 224 28 6 chr3 3720163 3720453 -214316705 + MLT1A1 LTR MaLR 50 357 -8 266 322 148 0 chr3 3720472 3720587 -214316571 - MIR3 SINE MIR -31 177 46 698 230 94 88 chr3 3722933 3723051 -214314107 + MLT1D LTR MaLR 8 124 -343 697 58 58 19 chr3 3723051 3723155 -214314003 - L1PA10 LINE L1 -6 6162 6055 698 230 94 88 chr3 3723155 3723514 -214313644 + MLT1D LTR MaLR 124 467 0 1963 152 0 3 chr3 3723596 3723892 -214313266 - AluJb SINE Alu -17 295 1 193 293 106 49 chr3 3724691 3724814 -214312344 + L3b LINE CR1 1424 1553 -30 436 236 89 52 chr3 3725278 3725469 -214311689 + L2 LINE L2 3094 3291 -22 780 306 51 63 chr3 3727333 3727881 -214309277 - L2 LINE L2 -10 3303 2764 1669 97 9 0 chr3 3729471 3729687 -214307471 + AluSq SINE Alu 1 218 -95 2333 102 0 10 chr3 3730215 3730528 -214306630 - AluSg SINE Alu 0 310 1 443 280 26 53 chr3 3730741 3730930 -214306228 + MIR SINE MIR 29 212 -50 225 326 112 0 chr3 3731850 3731948 -214305210 - L2 LINE L2 -8 3264 3156 261 0 0 0 chr3 3732155 3732184 -214304974 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2695 112 2 10 chr3 3732958 3733376 -214303782 - L1PB1 LINE L1 -1 6150 5736 23 54 0 0 chr3 3734120 3734157 -214303001 + AT_rich Low_complexity Low_complexity 1 37 0 652 358 49 0 chr3 3734714 3734957 -214302201 + MIR SINE MIR 2 256 -6 457 332 150 31 chr3 3735203 3735622 -214301536 + L2 LINE L2 2845 3313 0 5594 91 63 13 chr3 3735706 3736467 -214300691 + L1PA13 LINE L1 4631 5353 -810 2352 81 0 13 chr3 3736467 3736774 -214300384 + AluY SINE Alu 1 303 -8 5594 91 63 13 chr3 3736774 3737497 -214299661 + L1PA13 LINE L1 5353 6158 -5 347 338 162 0 chr3 3737606 3737748 -214299410 + L2 LINE L2 3107 3271 -1 315 0 0 0 chr3 3738238 3738273 -214298885 + (CA)n Simple_repeat Simple_repeat 2 36 0 261 325 0 0 chr3 3738341 3738418 -214298740 - MIR SINE MIR -102 160 84 2879 200 32 60 chr3 3739098 3739985 -214297173 + L1MB8 LINE L1 4726 5636 -542 237 77 26 0 chr3 3739985 3740024 -214297134 - Alu SINE Alu -7 301 262 2879 200 32 60 chr3 3740024 3740266 -214296892 + L1MB8 LINE L1 5636 5883 -295 2292 75 34 0 chr3 3740266 3740558 -214296600 + AluSq SINE Alu 1 302 -11 2879 200 32 60 chr3 3740558 3740891 -214296267 + L1MB8 LINE L1 5883 6178 0 1915 120 38 7 chr3 3740903 3741194 -214295964 + AluSx SINE Alu 1 300 -12 1052 226 73 20 chr3 3742758 3743145 -214294013 - MLT1C LTR MaLR -7 460 45 936 135 101 6 chr3 3743169 3743347 -214293811 - MLT1A1 LTR MaLR -1 364 170 370 305 76 8 chr3 3743592 3743723 -214293435 - MIR SINE MIR -115 147 8 281 259 0 0 chr3 3744666 3744720 -214292438 + MIR SINE MIR 206 259 -3 2091 107 45 0 chr3 3744795 3745084 -214292074 + AluSx SINE Alu 1 302 -10 488 297 78 21 chr3 3745092 3745284 -214291874 - MIR SINE MIR -28 234 32 2242 107 3 0 chr3 3745469 3745777 -214291381 - AluSx SINE Alu -3 309 1 1960 205 99 79 chr3 3746321 3747131 -214290027 - LTR1B LTR ERV1 0 826 1 1574 211 109 5 chr3 3747290 3747702 -214289456 + MLT2B1 LTR ERVL 1 455 -65 207 0 0 0 chr3 3747702 3747725 -214289433 + (TC)n Simple_repeat Simple_repeat 2 24 0 225 0 0 0 chr3 3747732 3747757 -214289401 + (TG)n Simple_repeat Simple_repeat 2 26 0 412 271 60 36 chr3 3748041 3748207 -214288951 - MIR SINE MIR -73 189 20 438 284 30 0 chr3 3748353 3748487 -214288671 + MIR SINE MIR 53 190 -72 238 225 42 133 chr3 3749499 3749563 -214287595 + MIR3 SINE MIR 68 118 -90 1587 160 29 59 chr3 3749563 3749869 -214287289 - AluJo SINE Alu -9 303 7 238 225 42 133 chr3 3749869 3749924 -214287234 + MIR3 SINE MIR 118 176 -32 459 0 0 0 chr3 3750355 3750406 -214286752 + (CA)n Simple_repeat Simple_repeat 2 52 0 864 164 102 40 chr3 3750545 3750771 -214286387 + MER4B LTR ERV1 1 240 -370 2394 59 0 3 chr3 3751297 3751602 -214285556 + AluY SINE Alu 2 305 -6 2167 117 0 7 chr3 3751919 3752217 -214284941 - AluSx SINE Alu -16 296 1 2095 92 10 26 chr3 3752336 3752642 -214284516 - AluY SINE Alu -10 301 1 23 0 0 0 chr3 3752866 3752889 -214284269 + AT_rich Low_complexity Low_complexity 1 23 0 290 296 148 7 chr3 3753892 3754034 -214283124 + L2 LINE L2 2920 3081 -191 1813 169 10 3 chr3 3757466 3757762 -214279396 + AluJo SINE Alu 5 302 -10 276 77 0 0 chr3 3758348 3758387 -214278771 + (CA)n Simple_repeat Simple_repeat 2 40 0 189 0 0 0 chr3 3758386 3758407 -214278751 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 319 196 165 62 chr3 3760221 3760318 -214276840 - MER5B DNA MER1_type -5 173 67 284 253 191 25 chr3 3760414 3760576 -214276582 + MIR SINE MIR 67 255 -7 1620 178 16 48 chr3 3760817 3761006 -214276152 - AluJo SINE Alu -8 304 126 2078 104 14 0 chr3 3761006 3761306 -214275852 + AluSx SINE Alu 1 304 0 1620 178 16 48 chr3 3761306 3761429 -214275729 - AluJo SINE Alu -186 126 1 2194 104 3 7 chr3 3761566 3761855 -214275303 + AluSx SINE Alu 1 288 -24 21 0 0 0 chr3 3761869 3761890 -214275268 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr3 3762734 3762759 -214274399 + AT_rich Low_complexity Low_complexity 1 25 0 950 110 50 33 chr3 3763124 3763306 -214273852 - L1MA5 LINE L1 -8 6292 6108 2045 119 16 10 chr3 3763309 3763619 -214273539 - AluSx SINE Alu 0 312 1 197 301 12 60 chr3 3763648 3763731 -214273427 + MER5A DNA MER1_type 77 155 -34 576 228 168 0 chr3 3763800 3763949 -214273209 - MER5A DNA MER1_type -7 182 9 349 371 29 11 chr3 3765409 3765584 -214271574 - MIR3 SINE MIR -6 202 25 2261 121 16 0 chr3 3766539 3766845 -214270313 + AluSx SINE Alu 1 311 -1 356 258 139 40 chr3 3767134 3767285 -214269873 + MER21B LTR ERV1 98 263 -600 528 127 0 0 chr3 3767388 3767467 -214269691 - AluSg1 SINE Alu -230 79 1 2089 79 76 7 chr3 3767526 3767817 -214269341 - AluY SINE Alu 0 311 1 847 183 57 73 chr3 3769704 3769950 -214267208 + MER46C DNA MER2_type 80 321 -17 241 189 54 54 chr3 3769997 3770071 -214267087 - L2 LINE L2 -63 3250 3177 1410 162 62 16 chr3 3770094 3770402 -214266756 - L1MC2 LINE L1 -9 6335 6014 831 291 86 35 chr3 3770773 3771178 -214265980 + MLT1K LTR MaLR 162 587 -1 251 268 42 92 chr3 3771684 3771826 -214265332 - MER5A DNA MER1_type -28 161 27 1399 199 8 105 chr3 3773349 3773750 -214263408 + MLT1A1 LTR MaLR 3 364 -1 292 395 9 0 chr3 3773796 3773910 -214263248 - MIR SINE MIR -56 152 38 909 306 77 31 chr3 3774736 3774964 -214262194 - L2 LINE L2 -1 3312 3057 1932 147 58 6 chr3 3774964 3775310 -214261848 - MLT1A1 LTR MaLR -1 364 1 909 306 77 31 chr3 3775310 3775473 -214261685 - L2 LINE L2 -256 3057 2903 216 167 0 0 chr3 3775498 3775534 -214261624 + (CA)n Simple_repeat Simple_repeat 1 36 0 2267 117 3 0 chr3 3775828 3776136 -214261022 + AluSx SINE Alu 1 309 -3 580 246 175 6 chr3 3776167 3776338 -214260820 + MIR SINE MIR 37 236 -26 1101 82 0 0 chr3 3777376 3777511 -214259647 + AluSq/x SINE Alu 1 135 -177 2041 121 28 3 chr3 3777511 3777801 -214259357 + AluSx SINE Alu 1 297 -15 279 266 128 11 chr3 3777886 3777980 -214259178 - L2 LINE L2 0 3313 3209 3354 175 55 48 chr3 3778992 3779437 -214257721 + L1MB7 LINE L1 5208 5649 -535 2587 191 60 15 chr3 3779437 3779975 -214257183 - MER68 LTR ERV1 0 562 1 3354 175 55 48 chr3 3779975 3780447 -214256711 + L1MB7 LINE L1 5649 6130 -54 300 200 0 0 chr3 3780619 3780674 -214256484 + MLT1A1 LTR MaLR 311 365 0 249 320 0 0 chr3 3780674 3780752 -214256406 - MIR SINE MIR -39 223 146 1368 167 0 5 chr3 3780920 3781141 -214256017 + AluJo SINE Alu 86 305 -7 1195 253 50 19 chr3 3781171 3781534 -214255624 + MLT1A2 LTR MaLR 1 374 0 316 337 200 6 chr3 3781546 3781721 -214255437 - MIR SINE MIR -52 210 2 852 199 6 0 chr3 3782199 3782360 -214254798 + FRAM SINE Alu 1 162 -14 333 286 58 94 chr3 3782759 3782983 -214254175 + MIR SINE MIR 32 247 -15 468 317 77 18 chr3 3783076 3783297 -214253861 - MIR SINE MIR -3 259 26 1566 232 50 40 chr3 3783387 3783735 -214253423 + MER39 LTR ERV1 8 351 -356 3505 188 104 23 chr3 3783735 3784532 -214252626 - MER21B LTR ERV1 -1 862 1 1566 232 50 40 chr3 3784532 3784697 -214252461 + MER39 LTR ERV1 351 707 0 469 242 86 86 chr3 3785671 3785940 -214251218 + MER102b DNA MER1_type 70 338 -3 1919 138 47 0 chr3 3787170 3787468 -214249690 - AluSx SINE Alu 0 312 1 723 237 23 6 chr3 3787626 3787799 -214249359 + MER5B DNA MER1_type 1 176 -2 369 0 0 0 chr3 3788331 3788372 -214248786 + (TG)n Simple_repeat Simple_repeat 1 41 0 885 168 66 6 chr3 3789301 3789468 -214247690 + FRAM SINE Alu 1 176 0 1902 141 0 29 chr3 3789765 3790071 -214247087 - AluJb SINE Alu -4 308 12 201 74 0 0 chr3 3790102 3790129 -214247029 + (CA)n Simple_repeat Simple_repeat 2 28 0 543 276 167 10 chr3 3790135 3790327 -214246831 - MIR SINE MIR -21 241 20 492 111 70 0 chr3 3791039 3791300 -214245858 + (TA)n Simple_repeat Simple_repeat 1 279 0 516 102 51 21 chr3 3791319 3791556 -214245602 + (TA)n Simple_repeat Simple_repeat 1 244 0 314 292 22 0 chr3 3791556 3791645 -214245513 - L1MC4 LINE L1 -1339 6703 6613 284 165 11 0 chr3 3791647 3791738 -214245420 + (TA)n Simple_repeat Simple_repeat 1 92 0 657 116 35 0 chr3 3791752 3791925 -214245233 + (TA)n Simple_repeat Simple_repeat 2 180 0 307 203 72 0 chr3 3791931 3792000 -214245158 + L1MCa LINE L1 1992 2065 -4361 721 138 3 20 chr3 3792003 3792350 -214244808 + (TA)n Simple_repeat Simple_repeat 1 341 0 2112 81 0 7 chr3 3792395 3792668 -214244490 - AluY SINE Alu -12 299 29 189 196 0 0 chr3 3792728 3792774 -214244384 + (TA)n Simple_repeat Simple_repeat 2 47 0 378 192 70 6 chr3 3793098 3793186 -214243972 + MER5A DNA MER1_type 86 188 -1 2225 116 0 13 chr3 3793459 3793770 -214243388 - AluSx SINE Alu -5 307 1 570 234 22 7 chr3 3794618 3794755 -214242403 + MIR SINE MIR 86 224 -38 263 232 0 14 chr3 3795838 3795907 -214241251 + LTR67 LTR ERVL 481 548 -9 540 86 0 12 chr3 3795908 3795989 -214241169 + MADE1 DNA Mariner 1 80 0 262 188 31 31 chr3 3796069 3796133 -214241025 + MIR3 SINE MIR 98 161 -47 429 263 53 26 chr3 3797408 3797560 -214239598 + MIR3 SINE MIR 32 187 -21 2022 95 0 18 chr3 3798742 3799015 -214238143 - AluSq SINE Alu -15 298 31 1873 145 74 57 chr3 3799712 3800119 -214237039 + MLT2D LTR ERVL 1 414 0 373 331 24 24 chr3 3800200 3800369 -214236789 - MLT1K LTR MaLR -195 393 225 1278 194 20 103 chr3 3801105 3801503 -214235655 - MLT1A1 LTR MaLR 0 365 1 211 176 15 29 chr3 3801713 3801781 -214235377 + (CATA)n Simple_repeat Simple_repeat 3 69 0 451 331 43 27 chr3 3802294 3802551 -214234607 + L3 LINE CR1 1160 1420 -157 1739 157 52 0 chr3 3803029 3803320 -214233838 - AluSx SINE Alu 0 305 1 378 222 25 12 chr3 3803445 3803526 -214233632 - L2 LINE L2 -6 3307 3226 387 245 32 39 chr3 3804433 3804588 -214232570 + L1ME2 LINE L1 6001 6154 -10 24 53 0 0 chr3 3804834 3804872 -214232286 + AT_rich Low_complexity Low_complexity 1 38 0 1311 204 51 19 chr3 3806819 3807133 -214230025 - MER58B DNA MER1_type -14 327 4 337 279 140 7 chr3 3807286 3807422 -214229736 - MIR SINE MIR -105 157 4 308 286 75 106 chr3 3809829 3809990 -214227168 + MIR3 SINE MIR 46 201 -7 1483 182 78 7 chr3 3810135 3810404 -214226754 - AluJb SINE Alu -24 288 1 486 321 40 36 chr3 3810412 3810661 -214226497 - MER102a DNA MER1_type 0 330 81 281 360 18 0 chr3 3810750 3810864 -214226294 + L2 LINE L2 2201 2316 -998 195 69 0 0 chr3 3811110 3811139 -214226019 + (CA)n Simple_repeat Simple_repeat 2 30 0 475 146 171 8 chr3 3811139 3811262 -214225896 + L1MA9 LINE L1 6164 6306 -6 215 254 98 142 chr3 3811316 3811521 -214225637 + L3 LINE CR1 1178 1373 -204 206 181 0 56 chr3 3812070 3812142 -214225016 + A-rich Low_complexity Low_complexity 5 72 0 409 333 16 38 chr3 3813802 3813988 -214223170 - MER5A DNA MER1_type -6 183 2 198 118 0 0 chr3 3814169 3814203 -214222955 + (CAT)n Simple_repeat Simple_repeat 2 35 0 259 260 27 0 chr3 3814216 3814289 -214222869 - MIR SINE MIR -10 252 178 258 105 0 0 chr3 3814426 3814464 -214222694 + (TG)n Simple_repeat Simple_repeat 1 38 0 186 143 0 0 chr3 3816052 3816087 -214221071 + (TA)n Simple_repeat Simple_repeat 2 36 0 321 308 61 33 chr3 3816825 3817039 -214220119 - L1ME4a LINE L1 -3 6118 5899 404 313 162 14 chr3 3817049 3817400 -214219758 - L1ME4a LINE L1 -262 5859 5457 271 366 54 71 chr3 3817400 3817750 -214219408 + L2 LINE L2 2907 3250 -22 500 43 29 0 chr3 3820258 3820328 -214216830 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 271 145 0 65 chr3 3820390 3820452 -214216706 + Alu SINE Alu 241 298 -3 240 211 0 0 chr3 3820503 3820560 -214216598 + (TA)n Simple_repeat Simple_repeat 1 57 0 309 284 32 0 chr3 3820560 3820655 -214216503 - L1MC4 LINE L1 -1336 6706 6609 1957 146 0 13 chr3 3821260 3821561 -214215597 + AluSx SINE Alu 1 297 -15 277 114 0 0 chr3 3821721 3821765 -214215393 - U5 snRNA snRNA -72 44 1 428 306 121 29 chr3 3821782 3821988 -214215170 + MIR SINE MIR 26 250 -12 1045 280 100 32 chr3 3822114 3822585 -214214573 - L2 LINE L2 -7 3306 2804 619 193 29 0 chr3 3822666 3822806 -214214352 - L1 LINE L1 -938 5208 5065 * 1427 167 10 33 chr3 3822789 3822994 -214214164 + L1MA5 LINE L1 5895 6092 -208 2106 142 0 3 chr3 3822994 3823305 -214213853 - AluSx SINE Alu 0 312 3 1427 167 10 33 chr3 3823305 3823405 -214213753 + L1MA5 LINE L1 6092 6193 -107 7261 47 3 0 chr3 3823619 3824691 -214212467 + L1PA5 LINE L1 5079 6153 -1 1092 216 124 63 chr3 3826951 3827273 -214209885 - MLT1H LTR MaLR -4 545 179 2289 95 0 7 chr3 3827273 3827579 -214209579 + AluY SINE Alu 1 304 -7 1092 216 124 63 chr3 3827579 3827764 -214209394 - MLT1H LTR MaLR -370 179 7 216 372 74 8 chr3 3827865 3827986 -214209172 - MIR SINE MIR -113 149 21 202 281 167 21 chr3 3828160 3828256 -214208902 + L2 LINE L2 3121 3230 -42 23181 59 7 9 chr3 3828379 3831555 -214205603 + L1P LINE L1 14 3184 -2962 1792 171 26 61 chr3 3832080 3832536 -214204622 - L1MB8 LINE L1 -7 6171 5732 2161 128 0 28 chr3 3833138 3833459 -214203699 - AluSx SINE Alu 0 312 1 850 326 86 10 chr3 3833634 3834030 -214203128 + MLT1J1 LTR MaLR 8 433 -13 276 343 153 7 chr3 3834111 3834248 -214202910 + L2 LINE L2 3111 3267 -5 2331 92 13 0 chr3 3834436 3834739 -214202419 - AluSp SINE Alu -6 307 1 21 36 0 0 chr3 3834742 3834770 -214202388 + AT_rich Low_complexity Low_complexity 1 28 0 257 233 17 0 chr3 3835243 3835303 -214201855 + MIR SINE MIR 199 259 -3 292 308 17 50 chr3 3835331 3835451 -214201707 + MIR3 SINE MIR 78 193 -15 2189 114 13 3 chr3 3836782 3837089 -214200069 - AluSx SINE Alu -2 310 1 504 45 0 0 chr3 3837260 3837327 -214199831 + (TG)n Simple_repeat Simple_repeat 2 68 0 254 223 66 0 chr3 3837491 3837574 -214199584 + MIR SINE MIR 90 143 -65 300 291 6 91 chr3 3837742 3837850 -214199308 + MIR SINE MIR 78 169 -93 1820 138 71 15 chr3 3837850 3838175 -214198983 - MER61A LTR ERV1 0 343 1 300 291 6 91 chr3 3838175 3838231 -214198927 + MIR SINE MIR 169 228 -34 484 284 44 29 chr3 3839669 3839873 -214197285 - L2 LINE L2 0 3313 3107 257 310 118 48 chr3 3840165 3840394 -214196764 - L3 LINE CR1 -80 1497 1253 224 254 0 56 chr3 3842754 3842825 -214194333 + MIR SINE MIR 69 135 -127 802 241 21 70 chr3 3843133 3843461 -214193697 + MARNA DNA Mariner 155 466 -120 708 147 0 0 chr3 3844049 3844151 -214193007 - FRAM SINE Alu -30 146 45 2202 120 0 13 chr3 3844264 3844580 -214192578 + AluSx SINE Alu 1 312 0 828 129 0 23 chr3 3844580 3844703 -214192455 - FLAM_C SINE Alu -180 122 1 4472 144 33 9 chr3 3845346 3846157 -214191001 - Tigger1 DNA MER2_type -11 2407 1577 356 153 34 0 chr3 3846178 3846296 -214190862 + (TA)n Simple_repeat Simple_repeat 1 122 0 927 126 16 0 chr3 3846296 3846423 -214190735 - AluSq/x SINE Alu -181 131 3 9917 133 15 8 chr3 3846424 3847999 -214189159 - Tigger1 DNA MER2_type -829 1589 3 238 282 13 13 chr3 3848563 3848641 -214188517 - MIR SINE MIR -114 148 71 2211 92 3 0 chr3 3848852 3849157 -214188001 - AluSq SINE Alu 0 306 1 2061 191 26 0 chr3 3849264 3849642 -214187516 + MLT1B LTR MaLR 3 390 0 646 269 34 17 chr3 3849720 3849895 -214187263 - MIR SINE MIR -10 252 75 182 327 0 0 chr3 3850142 3850197 -214186961 - MIR SINE MIR -67 141 87 403 234 110 28 chr3 3852543 3852688 -214184470 + L2 LINE L2 3109 3265 -48 1779 151 7 0 chr3 3852783 3853086 -214184072 + AluSx SINE Alu 1 305 0 467 352 5 9 chr3 3853181 3853391 -214183767 - MIR SINE MIR -12 250 42 1967 177 69 14 chr3 3853777 3854278 -214182880 + MLT2A2 LTR ERVL 3 553 -1 198 143 0 0 chr3 3855595 3855630 -214181528 + (CA)n Simple_repeat Simple_repeat 1 35 0 1355 272 79 88 chr3 3856580 3857604 -214179554 - L2 LINE L2 0 3313 2289 183 327 192 24 chr3 3858138 3858346 -214178812 - MIR SINE MIR 0 262 20 193 235 136 25 chr3 3858853 3858934 -214178224 + MIR SINE MIR 20 109 -153 1852 167 0 19 chr3 3859015 3859360 -214177798 + AluJb SINE Alu 1 339 0 3473 93 12 14 chr3 3860057 3860552 -214176606 - LOR1a LTR ERV1 -3 494 1 2045 100 0 78 chr3 3861377 3861708 -214175450 - AluY SINE Alu -6 305 1 204 122 73 0 chr3 3863217 3863299 -214173859 + (TA)n Simple_repeat Simple_repeat 1 88 0 461 337 57 26 chr3 3863373 3863566 -214173592 + MIR SINE MIR 53 251 -11 204 125 0 0 chr3 3864138 3864170 -214172988 + (CATA)n Simple_repeat Simple_repeat 3 34 0 228 67 0 0 chr3 3864171 3864201 -214172957 + (TG)n Simple_repeat Simple_repeat 2 31 0 1517 175 7 78 chr3 3864202 3864510 -214172648 - AluJo SINE Alu -26 286 1 24 32 0 0 chr3 3864611 3864642 -214172516 + AT_rich Low_complexity Low_complexity 1 31 0 234 0 0 0 chr3 3865525 3865551 -214171607 + (CA)n Simple_repeat Simple_repeat 2 27 0 635 230 5 108 chr3 3865777 3865803 -214171355 - MER58A DNA MER1_type -2227 193 166 2013 124 0 14 chr3 3865803 3866094 -214171064 - AluSx SINE Alu -19 293 7 635 230 5 108 chr3 3866094 3866280 -214170878 - MER58A DNA MER1_type -2254 166 3 1317 199 11 14 chr3 3866854 3867130 -214170028 - MLT1B LTR MaLR 0 390 116 2588 53 0 0 chr3 3868460 3868762 -214168396 + AluY SINE Alu 1 302 -9 433 284 46 0 chr3 3869070 3869179 -214167979 - MER81 DNA DNA 0 114 1 2176 55 0 15 chr3 3869728 3870000 -214167158 - AluY SINE Alu 0 311 44 368 293 30 15 chr3 3870009 3870207 -214166951 + L1ME3A LINE L1 5086 5286 -860 439 283 118 55 chr3 3870224 3870801 -214166357 + L1ME3A LINE L1 5420 6032 -138 553 303 76 5 chr3 3871136 3871321 -214165837 - MIR SINE MIR -17 245 48 2057 133 3 7 chr3 3871322 3871630 -214165528 + AluSx SINE Alu 1 307 -5 857 247 174 12 chr3 3871989 3872333 -214164825 - Charlie4a DNA MER1_type -27 481 82 565 311 50 25 chr3 3873379 3873617 -214163541 + MIR SINE MIR 19 262 0 1378 118 86 14 chr3 3873683 3873903 -214163255 + AluSx SINE Alu 1 236 -76 2030 41 0 34 chr3 3874598 3874867 -214162291 - L1PA7 LINE L1 -1 6153 5894 366 373 20 15 chr3 3875103 3875304 -214161854 - MIR SINE MIR -10 252 51 1654 177 3 3 chr3 3875753 3876041 -214161117 - AluJo SINE Alu -24 288 1 284 309 56 32 chr3 3877061 3877187 -214159971 - L2 LINE L2 -18 3295 3167 561 244 60 50 chr3 3877559 3877760 -214159398 + MIR SINE MIR 2 204 -58 378 201 35 7 chr3 3877869 3878013 -214159145 + (CATATA)n Simple_repeat Simple_repeat 3 150 0 187 172 0 125 chr3 3878014 3878078 -214159080 - MIR SINE MIR -7 255 200 206 176 0 0 chr3 3878209 3878243 -214158915 + MIR SINE MIR 206 239 -23 2201 96 0 10 chr3 3878547 3878839 -214158319 + AluSc SINE Alu 10 298 -11 4623 106 10 0 chr3 3878840 3879569 -214157589 - L1P LINE L1 -743 5403 4690 4813 80 35 1 chr3 3879569 3880235 -214156923 + L1PA8A LINE L1 5444 6131 0 403 267 0 8 chr3 3880527 3880657 -214156501 + L1MB7 LINE L1 6043 6174 -5 1059 287 176 33 chr3 3881400 3882349 -214154809 + L2 LINE L2 2216 3309 -4 456 325 67 21 chr3 3882781 3883021 -214154137 + MLT1L LTR MaLR 20 270 -345 1821 147 7 7 chr3 3883805 3884111 -214153047 + MER47A DNA MER2_type 60 365 -1 297 0 0 0 chr3 3884119 3884152 -214153006 + (TG)n Simple_repeat Simple_repeat 2 34 0 288 137 0 0 chr3 3884918 3884969 -214152189 + (T)n Simple_repeat Simple_repeat 1 51 0 269 316 0 0 chr3 3885155 3885234 -214151924 + MIR SINE MIR 130 208 -54 21 0 0 0 chr3 3886067 3886088 -214151070 + AT_rich Low_complexity Low_complexity 1 21 0 245 266 117 0 chr3 3886194 3886288 -214150870 - L2 LINE L2 0 3272 3168 24 91 0 0 chr3 3886448 3886514 -214150644 + AT_rich Low_complexity Low_complexity 1 66 0 1412 210 24 48 chr3 3886766 3887138 -214150020 - MLT1A1 LTR MaLR -2 363 1 1480 122 0 65 chr3 3887490 3887737 -214149421 + AluSg SINE Alu 7 237 -73 984 182 0 17 chr3 3887780 3887956 -214149202 - FRAM SINE Alu -3 173 1 29 28 0 0 chr3 3888369 3888405 -214148753 + AT_rich Low_complexity Low_complexity 1 36 0 360 0 0 0 chr3 3888643 3888683 -214148475 + (TG)n Simple_repeat Simple_repeat 1 40 0 605 302 45 16 chr3 3888706 3889100 -214148058 - L1ME3A LINE L1 -218 5952 5542 365 329 150 28 chr3 3889712 3889787 -214147371 + L2 LINE L2 2618 2682 -631 1505 90 9 9 chr3 3889787 3889998 -214147160 - L1PA10 LINE L1 -4 6164 5954 365 329 150 28 chr3 3889998 3890550 -214146608 + L2 LINE L2 2682 3313 0 1335 231 65 39 chr3 3890582 3890998 -214146160 + L2 LINE L2 2481 2907 -407 1258 188 90 0 chr3 3891011 3891277 -214145881 + AluJo SINE Alu 1 290 -22 555 195 0 18 chr3 3891298 3891411 -214145747 + L1MB1 LINE L1 6035 6145 -44 860 202 0 0 chr3 3891457 3891630 -214145528 + L1MA10 LINE L1 6161 6333 -1 576 274 55 20 chr3 3891748 3891949 -214145209 + L2 LINE L2 3105 3312 -1 588 260 148 51 chr3 3892106 3892479 -214144679 + MLT1I LTR MaLR 1 409 0 7681 52 4 0 chr3 3893578 3894543 -214142615 - L1PA5 LINE L1 -1531 4615 3647 7159 45 5 1 chr3 3894543 3896081 -214141077 + L1PA5 LINE L1 4610 6146 -8 255 61 0 0 chr3 3896257 3896290 -214140868 + (A)n Simple_repeat Simple_repeat 1 33 0 508 311 13 0 chr3 3896913 3897064 -214140094 + MIR SINE MIR 10 162 -100 21 36 0 0 chr3 3897331 3897359 -214139799 + AT_rich Low_complexity Low_complexity 1 28 0 469 298 82 33 chr3 3899520 3899765 -214137393 + MIR SINE MIR 2 258 -4 333 295 65 29 chr3 3901108 3901247 -214135911 + L3 LINE CR1 936 1079 -498 195 114 0 0 chr3 3901493 3901528 -214135630 + (CA)n Simple_repeat Simple_repeat 2 36 0 2210 96 10 10 chr3 3901574 3901876 -214135282 + AluSx SINE Alu 1 302 -10 343 271 66 60 chr3 3902807 3902973 -214134185 + MIR SINE MIR 52 218 -44 2236 130 16 32 chr3 3903525 3903895 -214133263 - THE1B LTR MaLR 0 364 1 1675 181 3 13 chr3 3904112 3904427 -214132731 + AluJo SINE Alu 1 312 0 2868 6 0 0 chr3 3904629 3904940 -214132218 + AluYa5 SINE Alu 1 311 0 282 317 146 0 chr3 3905045 3905168 -214131990 - L2 LINE L2 0 3272 3132 411 236 71 7 chr3 3905276 3905416 -214131742 + L1MA10 LINE L1 6179 6327 -7 808 323 51 51 chr3 3905463 3905783 -214131375 - L2 LINE L2 -219 3053 2737 1958 111 0 0 chr3 3905783 3906045 -214131113 + AluSx SINE Alu 48 309 -3 808 323 51 51 chr3 3906045 3906219 -214130939 - L2 LINE L2 -535 2737 2564 1747 221 86 8 chr3 3906229 3906705 -214130453 + MLT1F1 LTR MaLR 1 513 -54 198 0 0 0 chr3 3907485 3907507 -214129651 + (T)n Simple_repeat Simple_repeat 1 22 0 686 251 63 58 chr3 3907536 3907628 -214129530 - MER113 DNA MER1_type? -1 520 430 2049 124 3 3 chr3 3907628 3907934 -214129224 + AluSg SINE Alu 1 306 0 686 251 63 58 chr3 3907934 3908187 -214128971 - MER113 DNA MER1_type? -91 430 172 25 31 0 0 chr3 3908208 3908240 -214128918 + AT_rich Low_complexity Low_complexity 1 32 0 257 333 24 0 chr3 3908327 3908411 -214128747 - MIR3 SINE MIR -54 154 69 2118 108 7 0 chr3 3909710 3909996 -214127162 + AluSq SINE Alu 9 296 -17 199 0 31 31 chr3 3910002 3910034 -214127124 + (CAA)n Simple_repeat Simple_repeat 2 33 0 235 279 64 79 chr3 3910135 3910275 -214126883 + MIR SINE MIR 82 219 -43 5758 36 1 0 chr3 3910442 3911132 -214126026 - L1PA4 LINE L1 -1 6154 5464 410 132 13 0 chr3 3911348 3911424 -214125734 + (CCTA)n Simple_repeat Simple_repeat 3 79 0 2187 123 23 0 chr3 3911568 3911870 -214125288 - AluSq SINE Alu -3 310 2 258 282 17 60 chr3 3912218 3912335 -214124823 - MIR SINE MIR -147 115 4 215 297 102 47 chr3 3912439 3912567 -214124591 + L2 LINE L2 3178 3312 -1 278 297 117 39 chr3 3912885 3913013 -214124145 + MIR3 SINE MIR 60 197 -11 219 281 211 47 chr3 3913866 3913994 -214123164 + MIR3 SINE MIR 10 158 -50 2569 167 21 4 chr3 3914125 3914604 -214122554 - L1MB7 LINE L1 -16 6168 5682 250 284 126 11 chr3 3914796 3914891 -214122267 + MIR SINE MIR 61 166 -96 688 255 34 0 chr3 3915108 3915257 -214121901 - MER5A DNA MER1_type -35 154 1 400 330 139 14 chr3 3915323 3915538 -214121620 + MIR SINE MIR 6 247 -15 237 65 0 0 chr3 3916228 3916259 -214120899 + (CA)n Simple_repeat Simple_repeat 2 32 0 227 255 0 0 chr3 3916410 3916461 -214120697 + (CACCAT)n Simple_repeat Simple_repeat 1 51 0 431 320 92 44 chr3 3916614 3916864 -214120294 - MIR SINE MIR 0 262 1 344 341 103 0 chr3 3918698 3918824 -214118334 - MIR3 SINE MIR -5 203 65 275 258 11 21 chr3 3919067 3919160 -214117998 - LTR16C LTR ERVL -7 484 393 2172 138 0 0 chr3 3919445 3919749 -214117409 + AluSx SINE Alu 1 304 -8 980 293 19 74 chr3 3920002 3920158 -214117000 - L2 LINE L2 0 3313 3150 2314 86 0 43 chr3 3920158 3920483 -214116675 + AluY SINE Alu 1 311 0 980 293 19 74 chr3 3920483 3920756 -214116402 - L2 LINE L2 -163 3150 2908 1888 131 7 0 chr3 3920788 3921062 -214116096 - AluSx SINE Alu -36 276 1 695 204 5 5 chr3 3921079 3921270 -214115888 - L1MA4 LINE L1 -6 6294 6104 2208 118 3 6 chr3 3922044 3922358 -214114800 - AluSp SINE Alu 0 313 1 480 321 9 71 chr3 3923180 3923404 -214113754 + MIR SINE MIR 46 255 -7 363 295 27 9 chr3 3923488 3923600 -214113558 + L2 LINE L2 3159 3272 0 2202 123 7 0 chr3 3923877 3924187 -214112971 - AluSx SINE Alu 0 312 1 430 270 34 59 chr3 3925640 3925816 -214111342 - Charlie8 DNA MER1_type -2180 237 65 1992 143 0 10 chr3 3925816 3926116 -214111042 + AluJo SINE Alu 1 297 -15 430 270 34 59 chr3 3926116 3926143 -214111015 - Charlie8 DNA MER1_type -2352 65 39 239 347 51 10 chr3 3926276 3926374 -214110784 - L2 LINE L2 -27 3245 3144 266 333 13 0 chr3 3926540 3926615 -214110543 + MIR SINE MIR 36 111 -97 501 63 0 13 chr3 3926766 3926845 -214110313 - L1MA7 LINE L1 -2 6289 6212 207 0 0 0 chr3 3927952 3927975 -214109183 + (T)n Simple_repeat Simple_repeat 1 23 0 341 269 42 152 chr3 3928197 3928506 -214108652 - L2 LINE L2 -4 3268 2994 215 295 67 19 chr3 3928663 3928768 -214108390 + MIR SINE MIR 130 239 -23 2269 99 3 7 chr3 3928907 3929211 -214107947 + AluY SINE Alu 1 303 -8 255 337 99 35 chr3 3929439 3929611 -214107547 + MIR SINE MIR 2 184 -78 353 354 18 18 chr3 3929869 3930031 -214107127 - MIR SINE MIR -70 192 32 271 313 240 7 chr3 3931609 3931759 -214105399 + MIR3 SINE MIR 21 205 -3 233 57 0 0 chr3 3932153 3932188 -214104970 - HAL1 LINE L1 -174 2333 2299 409 304 88 0 chr3 3932334 3932515 -214104643 - HAL1 LINE L1 -393 2114 1918 181 350 100 0 chr3 3932809 3932929 -214104229 - MIR SINE MIR 0 262 131 241 274 11 32 chr3 3933021 3933116 -214104042 - L1MB8 LINE L1 -58 6120 6028 3708 143 22 14 chr3 3933117 3933265 -214103893 + L1PA16 LINE L1 5520 5665 -501 1799 181 0 13 chr3 3933265 3933579 -214103579 + AluJo SINE Alu 1 310 -2 3708 143 22 14 chr3 3933579 3934061 -214103097 + L1PA16 LINE L1 5665 6155 -11 359 299 55 0 chr3 3934308 3934435 -214102723 - MER117 DNA MER1_type -7 190 57 556 281 94 0 chr3 3934497 3934668 -214102490 + MIR SINE MIR 19 205 -57 260 159 87 58 chr3 3935480 3935549 -214101609 - L2 LINE L2 -66 3247 3177 329 275 181 29 chr3 3935595 3935766 -214101392 + MIR SINE MIR 17 213 -49 2031 164 0 6 chr3 3935851 3936162 -214100996 + AluJb SINE Alu 1 309 -3 336 239 110 28 chr3 3936315 3936424 -214100734 - L2 LINE L2 -3 3310 3193 353 293 64 0 chr3 3936719 3936859 -214100299 - MIR SINE MIR -14 248 100 1528 276 58 9 chr3 3937633 3938180 -214098978 + L1MC4a LINE L1 7233 7806 -2 2361 56 0 75 chr3 3938525 3938847 -214098311 - AluY SINE Alu -13 298 1 336 265 26 8 chr3 3939578 3939695 -214097463 + (TA)n Simple_repeat Simple_repeat 2 120 0 287 237 79 66 chr3 3941229 3941381 -214095777 + MER103 DNA DNA 1 154 -12 595 241 26 101 chr3 3941501 3941729 -214095429 + MER58A DNA MER1_type 11 221 -3 227 259 183 46 chr3 3943265 3943396 -214093762 - MIR3 SINE MIR -58 150 2 6329 50 0 2 chr3 3945181 3945999 -214091159 - L1PA7 LINE L1 -3 6151 5336 14672 95 3 22 chr3 3945999 3948331 -214088827 + L1PA7 LINE L1 3057 5343 -803 186 338 65 57 chr3 3948593 3948728 -214088430 + L2 LINE L2 2211 2351 -963 1803 165 3 7 chr3 3948728 3949062 -214088096 + AluSq SINE Alu 1 333 0 186 338 65 57 chr3 3949062 3949188 -214087970 + L2 LINE L2 2351 2475 -839 4938 115 40 24 chr3 3949619 3950443 -214086715 - L1PA15 LINE L1 0 6165 5329 2589 211 5 16 chr3 3950445 3951024 -214086134 + L1P LINE L1 2172 2744 -3402 471 320 53 44 chr3 3951426 3951651 -214085507 - MIR SINE MIR -23 239 13 333 116 20 3 chr3 3951713 3951963 -214085195 + AluJb SINE Alu 12 331 0 2406 46 0 0 chr3 3952932 3953267 -214083891 - AluY SINE Alu 0 336 2 989 153 6 12 chr3 3954040 3954232 -214082926 + AluSq SINE Alu 123 313 0 348 296 37 0 chr3 3954479 3954587 -214082571 - L2 LINE L2 -10 3303 3192 932 189 11 194 chr3 3954704 3955166 -214081992 + LTR24 LTR ERV1 188 467 0 504 286 17 28 chr3 3955252 3955430 -214081728 - L2 LINE L2 -5 3308 3133 1873 152 40 3 chr3 3955480 3955777 -214081381 + AluSx SINE Alu 1 308 -4 2240 214 6 4 chr3 3956902 3957445 -214079713 + L1P LINE L1 2908 3451 -2695 209 280 14 140 chr3 3957453 3957596 -214079562 + L2 LINE L2 3179 3303 -10 243 0 0 0 chr3 3961920 3961947 -214075211 + (CA)n Simple_repeat Simple_repeat 2 28 0 325 307 62 36 chr3 3962955 3963147 -214074011 + L1ME4a LINE L1 5702 5898 -223 1800 188 106 33 chr3 3963659 3964084 -214073074 - MLT1C LTR MaLR -8 459 4 225 244 0 0 chr3 3964231 3964276 -214072882 + (TGGA)n Simple_repeat Simple_repeat 3 47 0 320 330 48 37 chr3 3964993 3965181 -214071977 - MIR SINE MIR -69 193 4 743 168 0 0 chr3 3965304 3965429 -214071729 + FLAM_C SINE Alu 12 136 -7 219 139 0 0 chr3 3967161 3967197 -214069961 + (CAG)n Simple_repeat Simple_repeat 3 38 0 208 401 8 8 chr3 3967533 3967558 -214069600 - MIR SINE MIR -16 192 168 6873 42 37 3 chr3 3967558 3968883 -214068275 + L1PA5 LINE L1 4786 6154 0 208 401 8 8 chr3 3968883 3969011 -214068147 - MIR SINE MIR -39 169 38 891 200 0 11 chr3 3969592 3969767 -214067391 + AluJb SINE Alu 131 303 -9 2300 96 0 3 chr3 3971409 3971710 -214065448 + AluSc SINE Alu 1 300 -9 273 57 0 0 chr3 3972207 3972242 -214064916 + (TCC)n Simple_repeat Simple_repeat 2 36 0 3582 163 16 5 chr3 3972526 3973196 -214063962 + L1MA5 LINE L1 5618 6295 -5 300 111 0 0 chr3 3974562 3974607 -214062551 + (CAG)n Simple_repeat Simple_repeat 3 47 0 183 404 57 7 chr3 3974942 3975083 -214062075 - MIR3 SINE MIR -16 192 45 2192 197 83 10 chr3 3977517 3978025 -214059133 + L1MB8 LINE L1 5619 6163 -15 364 280 40 0 chr3 3979247 3979347 -214057811 + MER5A DNA MER1_type 9 112 -77 378 0 0 0 chr3 3979825 3979867 -214057291 + (CA)n Simple_repeat Simple_repeat 1 42 0 260 287 13 102 chr3 3980996 3981153 -214056005 + L2 LINE L2 3171 3313 0 2092 141 3 3 chr3 3981443 3981756 -214055402 + AluSq SINE Alu 1 313 0 237 258 103 52 chr3 3982283 3982438 -214054720 + MER102b DNA MER1_type 164 326 -15 1564 250 101 2 chr3 3982778 3983206 -214053952 + MER34 LTR ERV1 26 495 -47 180 0 0 0 chr3 3983781 3983801 -214053357 + (CA)n Simple_repeat Simple_repeat 1 20 0 200 276 0 0 chr3 3985042 3985100 -214052058 + CT-rich Low_complexity Low_complexity 3 60 0 222 193 23 23 chr3 3986995 3987083 -214050075 + GA-rich Low_complexity Low_complexity 6 93 0 180 164 66 0 chr3 3987099 3987160 -214049998 + GA-rich Low_complexity Low_complexity 1 65 0 244 287 161 0 chr3 3987290 3987377 -214049781 - MIR3 SINE MIR -27 181 81 796 171 0 0 chr3 3987531 3987660 -214049498 - FLAM_A SINE Alu -4 129 1 229 315 22 11 chr3 3991282 3991374 -214045784 + MER102b DNA MER1_type 234 326 -15 311 254 35 122 chr3 3991555 3991752 -214045406 + MIR3 SINE MIR 16 195 -13 2164 94 0 63 chr3 3994252 3994583 -214042575 - AluSg SINE Alu 0 310 1 477 151 264 0 chr3 3994685 3994791 -214042367 + MER20 DNA MER1_type 62 195 -24 258 81 0 0 chr3 3995453 3995490 -214041668 - L2 LINE L2 -1 3312 3276 1034 245 112 99 chr3 3996628 3997476 -214039682 - L1MC4 LINE L1 -6 8036 7178 205 277 27 74 chr3 3998015 3998163 -214038995 + L2 LINE L2 2665 2805 -509 1023 211 79 4 chr3 3998358 3998586 -214038572 + MIR SINE MIR 17 261 -1 298 338 127 19 chr3 3998880 3999037 -214038121 + L2 LINE L2 3099 3272 0 338 303 46 28 chr3 3999196 3999305 -214037853 + MIR SINE MIR 37 147 -61 291 227 76 0 chr3 3999533 3999599 -214037559 + MER91C DNA MER1_type 35 105 -35 331 162 59 15 chr3 3999804 3999872 -214037286 + MLT1D LTR MaLR 7 77 -428 * 1800 153 0 15 chr3 3999871 4000224 -214036934 - Tigger4(Zombi) DNA MER2_type -4 2727 34 1651 206 72 60 chr3 4000236 4000669 -214036489 + MLT1D LTR MaLR 68 505 0 512 269 8 35 chr3 4001074 4001258 -214035900 + L1ME2 LINE L1 5984 6166 0 248 272 35 46 chr3 4001427 4001600 -214035558 + HAL1 LINE L1 1424 1594 -913 1330 268 26 17 chr3 4001931 4002465 -214034693 + L1MC/D LINE L1 4298 4836 -1310 598 182 16 107 chr3 4002489 4002676 -214034482 - L1MB7 LINE L1 -5 6179 6010 * 1071 194 60 39 chr3 4002670 4002928 -214034230 + L1MC/D LINE L1 4845 5111 -1035 2250 110 3 0 chr3 4002928 4003219 -214033939 + AluSx SINE Alu 1 292 -20 1071 194 60 39 chr3 4003219 4003243 -214033915 + L1MC/D LINE L1 5111 5133 -1013 1813 149 0 32 chr3 4003243 4003575 -214033583 + AluJb SINE Alu 9 312 0 748 203 7 0 chr3 4003592 4003735 -214033423 + L1MC/D LINE L1 5497 5640 -602 1449 206 127 2 chr3 4004847 4005232 -214031926 + MLT2B2 LTR ERVL 2 508 -7 2274 107 6 21 chr3 4006186 4006524 -214030634 - MER1B DNA MER1_type 0 337 5 4545 133 41 13 chr3 4007155 4007904 -214029254 + MER4D LTR ERV1 134 903 0 1045 261 48 85 chr3 4007928 4008411 -214028747 - MLT1J LTR MaLR -44 467 3 201 283 17 33 chr3 4009814 4009874 -214027284 - L2 LINE L2 -8 3264 3206 180 200 0 0 chr3 4012198 4012238 -214024920 + GA-rich Low_complexity Low_complexity 1 40 0 2414 143 44 1 chr3 4013270 4013783 -214023375 - MER6A DNA MER2_type 0 605 1 185 0 40 0 chr3 4014366 4014391 -214022767 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 6728 125 135 91 chr3 4015661 4017287 -214019871 - pTR5 LTR ERV1 -1 2437 741 5870 215 38 34 chr3 4017717 4018143 -214019015 - L1MC/D LINE L1 -743 5403 4980 2191 123 53 8 chr3 4018143 4018501 -214018657 - THE1C LTR MaLR -1 374 1 9919 121 43 5 chr3 4018501 4020022 -214017136 - THE1C-int LTR MaLR 0 1580 1 1884 128 68 44 chr3 4020022 4020388 -214016770 - THE1C LTR MaLR 0 375 1 5870 215 38 34 chr3 4020388 4020576 -214016582 - L1MC/D LINE L1 -1166 4980 4794 2200 113 0 10 chr3 4020576 4021019 -214016139 + AluSx SINE Alu 1 312 0 5870 215 38 34 chr3 4021019 4022229 -214014929 - L1MC/D LINE L1 -1352 4794 3659 28 48 0 0 chr3 4023072 4023114 -214014044 + AT_rich Low_complexity Low_complexity 1 42 0 3545 94 0 0 chr3 4023122 4023603 -214013555 + L1PA11 LINE L1 5694 6174 0 442 325 104 0 chr3 4024412 4024624 -214012534 + MIR SINE MIR 5 238 -24 24 32 0 0 chr3 4024637 4024668 -214012490 + AT_rich Low_complexity Low_complexity 1 31 0 634 266 108 9 chr3 4024893 4025115 -214012043 - L3 LINE CR1 -745 832 589 1272 236 59 13 chr3 4025191 4025564 -214011594 - L1MB7 LINE L1 -16 6168 5779 274 331 103 14 chr3 4025831 4025976 -214011182 - L3 LINE CR1 -1096 481 324 378 224 224 0 chr3 4026147 4026254 -214010904 + MIR SINE MIR 4 134 -128 285 296 28 28 chr3 4027013 4027155 -214010003 + L1ME LINE L1 5682 5823 -298 181 341 24 24 chr3 4027655 4027740 -214009418 - L2 LINE L2 0 3272 3188 2255 94 3 7 chr3 4027992 4028290 -214008868 - AluSp SINE Alu -16 297 1 791 229 0 61 chr3 4028368 4028582 -214008576 + MER3 DNA MER1_type 1 201 -8 187 329 25 0 chr3 4028686 4028765 -214008393 - L2 LINE L2 -644 2670 2590 2317 100 10 0 chr3 4028768 4029069 -214008089 - AluSq SINE Alu -9 304 1 1784 166 7 0 chr3 4029482 4029771 -214007387 + AluSx SINE Alu 1 291 -21 180 0 0 0 chr3 4029781 4029801 -214007357 + (CAA)n Simple_repeat Simple_repeat 2 21 0 227 50 0 0 chr3 4029849 4029889 -214007269 - AluSg/x SINE Alu -2 301 262 733 74 11 0 chr3 4029889 4029984 -214007174 - AluSg/x SINE Alu -113 197 102 224 344 32 71 chr3 4031026 4031180 -214005978 + L2 LINE L2 3119 3266 -6 2035 114 3 36 chr3 4031646 4031954 -214005204 + AluY SINE Alu 1 298 -13 387 283 78 95 chr3 4032978 4033388 -214003770 + MLT1L LTR MaLR 120 522 -93 279 322 98 9 chr3 4033958 4034139 -214003019 + MIR3 SINE MIR 4 202 -60 374 311 123 34 chr3 4034335 4034570 -214002588 - MIR SINE MIR 0 262 7 303 93 0 0 chr3 4035035 4035078 -214002080 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 2261 93 3 13 chr3 4036311 4036624 -214000534 - AluSx SINE Alu 0 312 3 766 138 86 0 chr3 4036884 4037036 -214000122 - L1MB4 LINE L1 -5 6175 6011 273 289 50 63 chr3 4037296 4037455 -213999703 + MER5A DNA MER1_type 30 186 -3 2189 112 7 0 chr3 4038239 4038543 -213998615 - AluSq SINE Alu -7 306 1 617 182 45 0 chr3 4039023 4039155 -213998003 + MER33 DNA MER1_type 56 193 -131 785 222 12 18 chr3 4039883 4040054 -213997104 - MER20 DNA MER1_type -19 200 31 610 253 118 27 chr3 4040095 4040316 -213996842 + MIR SINE MIR 22 262 0 234 298 64 11 chr3 4040339 4040433 -213996725 + MIR3 SINE MIR 63 161 -47 430 364 16 5 chr3 4040453 4040640 -213996518 + MIR SINE MIR 9 197 -65 204 24 48 48 chr3 4040652 4040694 -213996464 + (TTAA)n Simple_repeat Simple_repeat 4 45 0 270 320 104 8 chr3 4041084 4041209 -213995949 + L2 LINE L2 3171 3307 -6 435 323 15 26 chr3 4041971 4042166 -213994992 + MER117 DNA MER1_type 5 197 0 614 274 38 28 chr3 4044156 4044368 -213992790 + L3 LINE CR1 709 922 -655 648 269 122 5 chr3 4044931 4045128 -213992030 + MIR SINE MIR 21 240 -22 2741 184 4 13 chr3 4045145 4045668 -213991490 + L1MB5 LINE L1 5649 6166 -8 184 217 0 43 chr3 4045779 4045825 -213991333 - L3 LINE CR1 -129 1448 1405 330 346 90 14 chr3 4045845 4046056 -213991102 + MIR SINE MIR 20 246 -16 375 330 82 16 chr3 4047307 4047489 -213989669 + MIR SINE MIR 23 216 -46 375 330 82 16 chr3 4047580 4047762 -213989396 + MIR SINE MIR 23 216 -46 375 330 82 16 chr3 4047853 4048035 -213989123 + MIR SINE MIR 23 216 -46 226 341 0 22 chr3 4048412 4048503 -213988655 + MIR SINE MIR 55 143 -119 373 347 64 6 chr3 4049716 4049889 -213987269 - MIR3 SINE MIR -11 197 15 27 29 0 0 chr3 4050414 4050448 -213986710 + AT_rich Low_complexity Low_complexity 1 34 0 1896 158 3 3 chr3 4051614 4051936 -213985222 - AluJb SINE Alu 0 312 1 2041 169 8 0 chr3 4051936 4052297 -213984861 - L1MB1 LINE L1 -53 6136 5773 856 138 0 103 chr3 4052299 4052386 -213984772 + L1M3 LINE L1 5607 5669 -665 2313 106 0 0 chr3 4052386 4052688 -213984470 - AluSx SINE Alu -10 302 1 856 138 0 103 chr3 4052688 4052774 -213984384 + L1M3 LINE L1 5669 5762 -572 592 349 4 24 chr3 4053993 4054245 -213982913 + MIR SINE MIR 3 249 -13 249 279 44 6 chr3 4054267 4054425 -213982733 + (TA)n Simple_repeat Simple_repeat 1 164 0 21 0 0 0 chr3 4054519 4054540 -213982618 + AT_rich Low_complexity Low_complexity 1 21 0 235 329 75 41 chr3 4055978 4056124 -213981034 - L2 LINE L2 -1 3271 3121 23 0 0 0 chr3 4056344 4056367 -213980791 + AT_rich Low_complexity Low_complexity 1 23 0 255 31 0 0 chr3 4056976 4057008 -213980150 + (TAGA)n Simple_repeat Simple_repeat 2 33 0 279 0 0 0 chr3 4057258 4057289 -213979869 + (CAGC)n Simple_repeat Simple_repeat 4 34 0 800 311 108 28 chr3 4057372 4057910 -213979248 + L2 LINE L2 2734 3308 -5 1133 109 0 0 chr3 4058860 4059025 -213978133 - L1PA14 LINE L1 0 6161 5997 409 216 14 0 chr3 4061005 4061144 -213976014 + (TA)n Simple_repeat Simple_repeat 2 142 0 306 211 22 44 chr3 4061149 4061239 -213975919 + L1MC4 LINE L1 6616 6703 -1339 230 243 0 0 chr3 4061277 4061347 -213975811 - L1MC3 LINE L1 -1137 6648 6579 381 80 0 2 chr3 4061739 4061795 -213975363 - L1PA5 LINE L1 -255 5899 5851 544 13 0 64 chr3 4061796 4061874 -213975284 + L1PA3 LINE L1 6083 6155 0 198 171 0 0 chr3 4062350 4062391 -213974767 + (CA)n Simple_repeat Simple_repeat 2 42 0 851 203 45 17 chr3 4062646 4062823 -213974335 - MER5A DNA MER1_type 0 189 8 279 229 42 31 chr3 4062991 4063087 -213974071 - MER94 DNA DNA -1 133 37 189 171 0 0 chr3 4063428 4063463 -213973695 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1985 128 0 7 chr3 4063486 4063774 -213973384 - AluSx SINE Alu -26 286 1 305 176 28 28 chr3 4065135 4065243 -213971915 + (TA)n Simple_repeat Simple_repeat 2 109 0 275 204 46 102 chr3 4065749 4065857 -213971301 + L2 LINE L2 3210 3311 -2 246 105 0 0 chr3 4065932 4065970 -213971188 + (CAATT)n Simple_repeat Simple_repeat 1 38 0 180 154 26 26 chr3 4065971 4066010 -213971148 - L2 LINE L2 -5 3267 3229 507 231 13 45 chr3 4066297 4066453 -213970705 + MER105 DNA DNA 54 204 0 1812 152 27 3 chr3 4066506 4066802 -213970356 - MER2 DNA MER2_type -42 303 1 199 303 45 34 chr3 4067544 4067633 -213969525 + L2 LINE L2 2868 2957 -315 2509 152 24 15 chr3 4067711 4068171 -213968987 - L1MA7 LINE L1 0 6291 5828 2520 160 42 25 chr3 4068179 4068891 -213968267 + L1M2 LINE L1 4942 5663 -649 1367 184 79 11 chr3 4068891 4069009 -213968149 + AluJb SINE Alu 2 111 -201 246 32 0 0 chr3 4069009 4069040 -213968118 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1367 184 79 11 chr3 4069040 4069199 -213967959 + AluJb SINE Alu 111 298 -14 2520 160 42 25 chr3 4069199 4069333 -213967825 + L1M2 LINE L1 5663 5793 -519 413 187 0 11 chr3 4069334 4069425 -213967733 + (CA)n Simple_repeat Simple_repeat 2 91 0 244 175 0 53 chr3 4069425 4069482 -213967676 + L1M2 LINE L1 5783 5836 -455 364 284 220 15 chr3 4069484 4069752 -213967406 + L2 LINE L2 2991 3313 0 347 297 0 9 chr3 4070316 4070427 -213966731 + L2 LINE L2 3163 3272 0 318 327 39 20 chr3 4070697 4070961 -213966197 - L1MC4a LINE L1 -299 5822 5637 225 0 0 0 chr3 4071377 4071402 -213965756 + (T)n Simple_repeat Simple_repeat 1 25 0 40641 68 3 6 chr3 4071487 4071572 -213965586 + L1PA5 LINE L1 2 86 -6068 2451 62 3 3 chr3 4071572 4071877 -213965281 - AluY SINE Alu -6 305 1 40641 68 3 6 chr3 4071877 4077954 -213959204 + L1PA5 LINE L1 86 6152 -2 246 226 85 104 chr3 4078395 4078427 -213958731 - L2 LINE L2 0 3313 3282 1652 207 81 29 chr3 4078427 4078871 -213958287 + MLT1C LTR MaLR 1 467 0 246 226 85 104 chr3 4078871 4078944 -213958214 - L2 LINE L2 -31 3282 3210 203 79 0 79 chr3 4079045 4079083 -213958075 + (TAAAAA)n Simple_repeat Simple_repeat 1 35 0 294 29 0 0 chr3 4079530 4079565 -213957593 + (CA)n Simple_repeat Simple_repeat 2 36 0 296 305 34 17 chr3 4080130 4080248 -213956910 - MIR SINE MIR -1 261 142 474 161 44 21 chr3 4080482 4080712 -213956446 + GA-rich Low_complexity Low_complexity 1 235 0 579 275 71 6 chr3 4080732 4080914 -213956244 + MIR SINE MIR 6 199 -63 213 205 0 0 chr3 4080953 4080992 -213956166 + (CAT)n Simple_repeat Simple_repeat 1 39 0 314 379 0 0 chr3 4080997 4081100 -213956058 + L3 LINE CR1 1435 1537 -40 2349 64 7 10 chr3 4081233 4081531 -213955627 - AluSq SINE Alu -16 297 1 221 269 216 15 chr3 4081687 4081821 -213955337 + MIR SINE MIR 74 234 -28 28 71 0 0 chr3 4081972 4082028 -213955130 + AT_rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chr3 4082145 4082167 -213954991 + AT_rich Low_complexity Low_complexity 1 22 0 2260 60 46 0 chr3 4082397 4082680 -213954478 - AluSg SINE Alu -14 296 1 315 170 0 0 chr3 4083462 4083515 -213953643 - L1PA5 LINE L1 -151 6003 5951 357 279 105 12 chr3 4085484 4085656 -213951502 + MIR SINE MIR 59 246 -16 2136 128 3 0 chr3 4085854 4086158 -213951000 + AluSx SINE Alu 1 305 -7 693 317 97 38 chr3 4086563 4086674 -213950484 - LTR16C LTR ERVL -20 471 368 1932 148 13 0 chr3 4086674 4086972 -213950186 + AluSx SINE Alu 1 302 -10 693 317 97 38 chr3 4086972 4087305 -213949853 - LTR16C LTR ERVL -123 368 1 191 383 66 48 chr3 4088152 4088379 -213948779 - L3 LINE CR1 -44 1533 1303 4477 123 13 20 chr3 4089079 4089824 -213947334 - L1MC1 LINE L1 0 6333 5594 2292 75 0 3 chr3 4090452 4090746 -213946412 + AluY SINE Alu 1 293 -18 186 318 45 0 chr3 4090890 4090956 -213946202 + MIR3 SINE MIR 89 157 -51 273 295 21 11 chr3 4091005 4091100 -213946058 - MIR SINE MIR -94 168 73 240 285 46 15 chr3 4092530 4092660 -213944498 - L1P LINE L1 -2409 3737 3604 24 32 0 0 chr3 4093530 4093561 -213943597 + AT_rich Low_complexity Low_complexity 1 31 0 2307 92 10 0 chr3 4093565 4093859 -213943299 + AluSx SINE Alu 1 297 -15 515 323 106 0 chr3 4094406 4094641 -213942517 - MIR SINE MIR 0 262 3 2246 94 0 3 chr3 4094853 4095151 -213942007 + AluSq SINE Alu 1 297 -16 1447 244 29 12 chr3 4095174 4095584 -213941574 + L1ME3 LINE L1 5745 6161 -1 205 51 51 0 chr3 4095739 4095778 -213941380 + (CAGG)n Simple_repeat Simple_repeat 4 44 0 1503 114 55 4 chr3 4096067 4096304 -213940854 - L1PA10 LINE L1 -6 6162 5914 244 226 32 11 chr3 4097535 4097628 -213939530 + (TA)n Simple_repeat Simple_repeat 2 96 0 2359 94 0 0 chr3 4097859 4098166 -213938992 + AluY SINE Alu 1 307 -4 317 298 44 9 chr3 4098502 4098616 -213938542 + MIR3 SINE MIR 81 198 -10 223 363 105 0 chr3 4100524 4100648 -213936510 - MIR SINE MIR -125 137 1 224 323 56 10 chr3 4100686 4100784 -213936374 - MIR SINE MIR -66 142 53 2974 218 189 21 chr3 4100785 4101344 -213935814 - L1MC4a LINE L1 -11 7797 7333 1735 190 0 28 chr3 4101344 4101665 -213935493 - AluJb SINE Alu 0 312 1 2974 218 189 21 chr3 4101665 4101767 -213935391 - L1MC4a LINE L1 -475 7333 7249 447 19 0 0 chr3 4101767 4101819 -213935339 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 2974 218 189 21 chr3 4101819 4102173 -213934985 - L1MC4a LINE L1 -559 7249 6610 1818 220 44 80 chr3 4102624 4103276 -213933882 + MLT1E2 LTR MaLR 1 626 0 239 333 45 58 chr3 4103514 4103670 -213933488 + MIR3 SINE MIR 4 113 -95 2272 147 78 40 chr3 4104037 4104487 -213932671 + MLT1C LTR MaLR 1 467 0 1307 167 25 21 chr3 4104708 4104990 -213932168 + L1MA4 LINE L1 6009 6291 -9 294 305 169 0 chr3 4106074 4106192 -213930966 + MIR3 SINE MIR 32 169 -39 25 51 0 0 chr3 4106523 4106562 -213930596 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr3 4106701 4106723 -213930435 + AT_rich Low_complexity Low_complexity 1 22 0 393 22 0 0 chr3 4106955 4107001 -213930157 + (TA)n Simple_repeat Simple_repeat 2 47 0 266 209 0 77 chr3 4107022 4107113 -213930045 - L1MC4 LINE L1 -1347 6695 6612 554 280 52 28 chr3 4107729 4107940 -213929218 - MIR SINE MIR -13 249 34 206 108 54 0 chr3 4107977 4108014 -213929144 + A-rich Low_complexity Low_complexity 6 44 0 1413 203 53 4 chr3 4111081 4111362 -213925796 + AluJb SINE Alu 1 295 -17 1789 271 86 31 chr3 4111545 4111600 -213925558 - L1ME2 LINE L1 -9 6155 6104 2038 153 25 11 chr3 4111600 4111966 -213925192 + L1PA16 LINE L1 5792 6162 -4 1789 271 86 31 chr3 4111966 4112319 -213924839 - L1ME2 LINE L1 -60 6104 5772 2123 129 7 0 chr3 4112319 4112621 -213924537 + AluSx SINE Alu 1 304 -8 1789 271 86 31 chr3 4112621 4112954 -213924204 - L1ME2 LINE L1 -392 5772 5372 280 109 0 0 chr3 4113407 4113453 -213923705 - MADE1 DNA Mariner -34 46 1 1938 196 58 18 chr3 4114018 4114467 -213922691 + MLT1C LTR MaLR 1 467 0 258 136 0 0 chr3 4114500 4114544 -213922614 + L1MA6 LINE L1 6033 6076 -224 421 143 0 0 chr3 4114544 4114607 -213922551 + MLT1C LTR MaLR 403 465 -2 1236 159 68 0 chr3 4114643 4114894 -213922264 + L1MA6 LINE L1 6033 6300 0 2035 211 130 12 chr3 4117028 4117154 -213920004 - L1MC4 LINE L1 -6 8036 7926 324 0 0 0 chr3 4117154 4117190 -213919968 + (CA)n Simple_repeat Simple_repeat 2 37 0 2035 211 130 12 chr3 4117190 4117717 -213919441 - L1MC4 LINE L1 -116 7926 7306 260 351 0 0 chr3 4117717 4117794 -213919364 - L2 LINE L2 -57 3256 3180 206 300 135 38 chr3 4117837 4118074 -213919084 - L2 LINE L2 -121 3192 2933 2361 75 0 10 chr3 4118235 4118530 -213918628 - AluSx SINE Alu -20 292 1 1846 164 0 0 chr3 4118535 4118843 -213918315 - AluSx SINE Alu 0 308 1 236 293 38 57 chr3 4121482 4121514 -213915644 - L2 LINE L2 0 3272 3241 1652 207 81 29 chr3 4121514 4121958 -213915200 + MLT1C LTR MaLR 1 467 0 236 293 38 57 chr3 4121958 4122031 -213915127 - L2 LINE L2 -31 3241 3169 202 50 0 100 chr3 4122131 4122171 -213914987 + (TAAAAA)n Simple_repeat Simple_repeat 1 36 0 294 29 0 0 chr3 4122616 4122651 -213914507 + (CA)n Simple_repeat Simple_repeat 2 36 0 296 305 34 17 chr3 4123216 4123334 -213913824 - MIR SINE MIR -1 261 142 259 192 58 0 chr3 4123459 4123511 -213913647 + Tigger5 DNA MER2_type 1 55 -2268 492 149 45 22 chr3 4123565 4123794 -213913364 + GA-rich Low_complexity Low_complexity 1 234 0 579 275 71 6 chr3 4123814 4123996 -213913162 + MIR SINE MIR 6 199 -63 213 205 0 0 chr3 4124035 4124074 -213913084 + (CAT)n Simple_repeat Simple_repeat 1 39 0 314 379 0 0 chr3 4124079 4124182 -213912976 + L3 LINE CR1 1435 1537 -40 2411 70 0 3 chr3 4124315 4124613 -213912545 - AluSq SINE Alu -16 297 1 2260 60 46 0 chr3 4124952 4125235 -213911923 + AluSg SINE Alu 1 296 -14 24 0 0 0 chr3 4125465 4125489 -213911669 + AT_rich Low_complexity Low_complexity 1 24 0 28 71 0 0 chr3 4125606 4125662 -213911496 + AT_rich Low_complexity Low_complexity 1 56 0 221 269 216 15 chr3 4125813 4125947 -213911211 - MIR SINE MIR -28 234 74 2437 74 0 3 chr3 4126103 4126413 -213910745 + AluY SINE Alu 1 309 -2 369 302 6 52 chr3 4127302 4127334 -213909824 - MIR SINE MIR -67 195 163 2303 96 0 7 chr3 4127334 4127637 -213909521 - AluSp SINE Alu -12 301 1 369 302 6 52 chr3 4127637 4127776 -213909382 - MIR SINE MIR -99 163 32 246 279 18 81 chr3 4127914 4128025 -213909133 - MIR SINE MIR -56 152 49 204 198 20 40 chr3 4128124 4128225 -213908933 + A-rich Low_complexity Low_complexity 2 100 0 183 250 89 0 chr3 4128811 4128867 -213908291 + L2 LINE L2 3248 3308 -5 393 323 31 26 chr3 4128883 4129078 -213908080 + MLT1J1 LTR MaLR 2 197 -249 1464 131 36 0 chr3 4129521 4129743 -213907415 + MER30 DNA MER1_type 1 230 0 2471 79 0 0 chr3 4130230 4130534 -213906624 - AluSc SINE Alu -5 304 1 206 349 0 64 chr3 4130899 4131008 -213906150 + L2 LINE L2 2998 3099 -173 1967 138 14 0 chr3 4134358 4134641 -213902517 - AluSx SINE Alu -25 287 1 466 303 141 29 chr3 4135805 4136082 -213901076 - L2 LINE L2 -3 3310 3003 2174 94 3 3 chr3 4138183 4138470 -213898688 + AluSg SINE Alu 1 287 -23 2543 46 3 3 chr3 4139074 4139378 -213897780 + AluY SINE Alu 1 304 -7 1350 149 164 11 chr3 4139621 4139883 -213897275 + AluSq SINE Alu 2 303 0 2418 75 0 0 chr3 4140641 4140959 -213896199 - AluY SINE Alu 0 318 1 24 0 0 0 chr3 4141663 4141687 -213895471 + AT_rich Low_complexity Low_complexity 1 24 0 244 325 0 24 chr3 4143614 4143697 -213893461 + L3b LINE CR1 1250 1330 -253 239 304 173 52 chr3 4143724 4143915 -213893243 + MIR SINE MIR 1 214 -48 204 318 85 64 chr3 4143927 4144147 -213893011 + MIR SINE MIR 17 256 -6 294 284 167 59 chr3 4145182 4145604 -213891554 + L2 LINE L2 2764 3220 -52 31 26 0 0 chr3 4145703 4145741 -213891417 + AT_rich Low_complexity Low_complexity 1 38 0 1075 200 23 5 chr3 4145898 4146113 -213891045 - MER20 DNA MER1_type 0 219 1 2369 116 11 21 chr3 4146520 4146899 -213890259 + THE1C LTR MaLR 1 375 0 2246 96 0 0 chr3 4147566 4147867 -213889291 + AluY SINE Alu 1 301 -10 432 264 97 7 chr3 4149012 4149167 -213887991 - MIR SINE MIR -10 252 84 278 320 47 16 chr3 4150026 4150154 -213887004 + MIR3 SINE MIR 37 168 -40 407 279 162 13 chr3 4150212 4150366 -213886792 + MER5A DNA MER1_type 13 189 0 4370 105 14 0 chr3 4150648 4151274 -213885884 + MER41B LTR ERV1 1 635 0 229 188 59 71 chr3 4151928 4152013 -213885145 + LTR67 LTR ERVL 459 542 -15 206 373 0 27 chr3 4152076 4152151 -213885007 + MIR SINE MIR 27 99 -109 2116 116 0 0 chr3 4152863 4153156 -213884002 - AluSq SINE Alu -20 293 1 352 309 73 57 chr3 4153183 4153429 -213883729 + MIR SINE MIR 2 251 -11 1543 62 0 19 chr3 4153479 4153690 -213883468 - AluY SINE Alu -3 308 102 1242 90 50 20 chr3 4153697 4153897 -213883261 - LTR12 LTR ERV1 -23 691 486 280 274 11 0 chr3 4153918 4154013 -213883145 - LTR30 LTR ERV1 -79 643 548 4175 168 105 54 chr3 4154016 4155185 -213881973 - pTR5 LTR ERV1 -411 2027 743 814 108 0 0 chr3 4155185 4155296 -213881862 - AluY SINE Alu -200 111 1 1540 137 92 30 chr3 4155316 4155651 -213881507 - L1MA7 LINE L1 -10 6281 5926 916 179 25 0 chr3 4155653 4155815 -213881343 + Tigger7 DNA MER2_type 1 166 -539 267 233 60 69 chr3 4156045 4156161 -213880997 + MIR3 SINE MIR 83 197 -11 187 269 115 0 chr3 4157076 4157154 -213880004 + L2 LINE L2 739 825 -2489 311 360 27 0 chr3 4158461 4158572 -213878586 - MIR3 SINE MIR -47 161 48 415 333 64 64 chr3 4158700 4159045 -213878113 + L1MEc LINE L1 4 348 -5771 309 307 12 37 chr3 4159254 4159417 -213877741 + L1MEc LINE L1 602 760 -5359 870 231 126 40 chr3 4159621 4159695 -213877463 + MLT1I LTR MaLR 5 71 -338 2266 104 7 0 chr3 4159695 4159994 -213877164 + AluSx SINE Alu 1 301 -11 870 231 126 40 chr3 4159994 4160292 -213876866 + MLT1I LTR MaLR 71 409 0 340 322 50 26 chr3 4160434 4160928 -213876230 + L1MEc LINE L1 1198 1652 -868 21 0 0 0 chr3 4161004 4161025 -213876133 + AT_rich Low_complexity Low_complexity 1 21 0 229 380 71 5 chr3 4161680 4161864 -213875294 + L2 LINE L2 3118 3313 0 2117 120 0 13 chr3 4162827 4163126 -213874032 + AluSg SINE Alu 1 295 -15 2114 183 47 10 chr3 4163226 4163631 -213873527 + MSTB LTR MaLR 1 420 -6 3618 124 60 28 chr3 4163650 4164264 -213872894 - MER51A LTR ERV1 0 634 1 1669 171 32 20 chr3 4164310 4164555 -213872603 - L1MB7 LINE L1 -15 6169 5917 2447 108 19 8 chr3 4164555 4164926 -213872232 - THE1C LTR MaLR 0 375 1 1669 171 32 20 chr3 4164926 4165024 -213872134 - L1MB7 LINE L1 -267 5917 5822 206 209 90 45 chr3 4165164 4165231 -213871927 - MIR SINE MIR -88 174 105 420 269 88 18 chr3 4165478 4165649 -213871509 - Charlie8 DNA MER1_type -2161 256 74 312 310 44 0 chr3 4165937 4166050 -213871108 - L2 LINE L2 -1 3271 3154 426 217 167 0 chr3 4166474 4166594 -213870564 + MLT1H LTR MaLR 405 544 -5 270 0 0 0 chr3 4166664 4166694 -213870464 + (TC)n Simple_repeat Simple_repeat 2 31 0 234 0 0 0 chr3 4166693 4166719 -213870439 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 1036 200 16 5 chr3 4166727 4166917 -213870241 - AluJb SINE Alu -32 280 89 1428 216 71 31 chr3 4167198 4167647 -213869511 + MLT1C LTR MaLR 1 467 0 388 354 32 6 chr3 4169745 4169903 -213867255 + MIR SINE MIR 15 176 -86 263 280 32 21 chr3 4171402 4171495 -213865663 + L2 LINE L2 3179 3272 0 296 283 107 6 chr3 4171932 4172091 -213865067 + MIR SINE MIR 87 261 -1 412 336 80 29 chr3 4172781 4172946 -213864212 + MIR SINE MIR 13 195 -67 2045 130 0 3 chr3 4172946 4173231 -213863927 + AluSx SINE Alu 1 284 -28 412 336 80 29 chr3 4173231 4173303 -213863855 + MIR SINE MIR 195 262 0 2092 36 0 33 chr3 4174514 4174788 -213862370 - L1PA3 LINE L1 -3 6152 5888 859 191 30 6 chr3 4175308 4175476 -213861682 - LTR32 LTR ERVL 0 471 300 2027 155 21 15 chr3 4175508 4175843 -213861315 - LTR32 LTR ERVL -120 351 15 497 218 1 48 chr3 4175881 4176012 -213861146 + MER20 DNA MER1_type 32 155 -64 409 269 119 15 chr3 4176677 4176811 -213860347 + MIR SINE MIR 1 148 -114 2378 211 78 47 chr3 4176828 4177548 -213859610 + MER21B LTR ERV1 1 833 -30 282 284 0 12 chr3 4177570 4177651 -213859507 + MIR SINE MIR 162 241 -21 226 274 0 32 chr3 4177695 4177757 -213859401 - MIR SINE MIR -63 145 86 299 279 137 0 chr3 4178330 4178513 -213858645 - MER113 DNA MER1_type? -308 213 6 1313 177 170 0 chr3 4178515 4178809 -213858349 + MER2 DNA MER2_type 1 344 0 1221 235 66 28 chr3 4178840 4178978 -213858180 - MER39 LTR ERV1 -32 675 544 2328 35 45 3 chr3 4178978 4179268 -213857890 - AluY SINE Alu -9 302 1 1221 235 66 28 chr3 4179268 4179491 -213857667 - MER39 LTR ERV1 -163 544 300 282 29 0 0 chr3 4180236 4180271 -213856887 + (CA)n Simple_repeat Simple_repeat 2 36 0 379 326 45 15 chr3 4180497 4180629 -213856529 + MIR SINE MIR 19 154 -108 1929 202 42 77 chr3 4180843 4180876 -213856282 - MLT2B1 LTR ERVL -9 511 478 387 0 0 0 chr3 4180876 4180919 -213856239 + (TG)n Simple_repeat Simple_repeat 2 44 0 1929 202 42 77 chr3 4180919 4181415 -213855743 - MLT2B1 LTR ERVL -42 478 1 314 213 63 39 chr3 4181502 4181629 -213855529 - Charlie7 DNA MER1_type -13 2599 2470 22 0 0 0 chr3 4181643 4181665 -213855493 + AT_rich Low_complexity Low_complexity 1 22 0 1951 188 54 15 chr3 4181935 4182398 -213854760 - Charlie1b DNA MER1_type -41 482 2 1042 211 5 5 chr3 4183248 4183438 -213853720 + MER20 DNA MER1_type 29 218 -1 2521 167 42 10 chr3 4184695 4185199 -213851959 - L1MB4 LINE L1 -2 6178 5659 492 312 75 17 chr3 4185989 4186162 -213850996 - MIR SINE MIR -74 188 6 2378 127 94 2 chr3 4187580 4187982 -213849176 - Tigger2 DNA MER2_type 0 2718 2280 221 363 65 0 chr3 4188133 4188257 -213848901 + MIR SINE MIR 131 262 0 239 262 0 0 chr3 4188421 4188463 -213848695 + AluJo SINE Alu 2 43 -257 1170 195 44 12 chr3 4188491 4188742 -213848416 + AluJo SINE Alu 28 286 -26 742 241 29 0 chr3 4189169 4189339 -213847819 - FAM SINE Alu 0 175 1 22 0 0 0 chr3 4192355 4192377 -213844781 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr3 4193020 4193065 -213844093 + AT_rich Low_complexity Low_complexity 1 45 0 311 301 55 55 chr3 4194124 4194522 -213842636 - L1M4 LINE L1 -2849 3297 2900 757 165 41 0 chr3 4195219 4195340 -213841818 - AluJo SINE Alu -153 159 34 250 240 0 0 chr3 4195408 4195458 -213841700 - L2 LINE L2 0 3313 3264 374 302 101 13 chr3 4197065 4197214 -213839944 - MIR3 SINE MIR -9 199 38 326 308 45 0 chr3 4197654 4197787 -213839371 + Charlie8 DNA MER1_type 61 199 -2218 6193 230 57 61 chr3 4197882 4199953 -213837205 + L1MB7 LINE L1 2310 4388 -1994 2476 57 0 0 chr3 4199953 4200251 -213836907 - AluY SINE Alu -13 298 1 6193 230 57 61 chr3 4200251 4200301 -213836857 + L1MB7 LINE L1 4388 4437 -1945 180 0 0 0 chr3 4200301 4200321 -213836837 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 6193 230 57 61 chr3 4200321 4200856 -213836302 + L1MB7 LINE L1 4437 4962 -1420 3954 187 30 23 chr3 4200866 4201768 -213835390 + L1MB7 LINE L1 5492 6399 -21 1497 189 107 42 chr3 4203801 4204203 -213832955 + L1MB8 LINE L1 5744 6171 -7 287 360 71 20 chr3 4204206 4204403 -213832755 + MIR SINE MIR 30 236 -26 206 254 55 0 chr3 4204517 4204572 -213832586 - L2 LINE L2 -4 3309 3252 2070 119 3 0 chr3 4204963 4205256 -213831902 - AluSg SINE Alu -16 294 1 183 184 0 0 chr3 4205379 4205417 -213831741 + (CA)n Simple_repeat Simple_repeat 2 39 0 2242 91 7 3 chr3 4206536 4206844 -213830314 + AluSc SINE Alu 1 309 0 22 0 0 0 chr3 4207834 4207856 -213829302 + AT_rich Low_complexity Low_complexity 1 22 0 1002 171 32 3 chr3 4207874 4208076 -213829082 + L1PB3 LINE L1 5940 6141 -10 271 309 0 0 chr3 4209288 4209372 -213827786 - L2 LINE L2 -5 3308 3225 1790 158 3 10 chr3 4209375 4209685 -213827473 + AluJb SINE Alu 3 310 -2 317 298 37 42 chr3 4209723 4209938 -213827220 - L2 LINE L2 -79 3234 3021 8112 39 0 2 chr3 4210963 4212729 -213824429 + L1PA4 LINE L1 4389 6154 -1 1671 163 13 3 chr3 4212750 4213051 -213824107 - AluJb SINE Alu -3 309 6 915 256 183 28 chr3 4213136 4213562 -213823596 + MLT1H LTR MaLR 58 549 0 886 197 121 10 chr3 4213763 4213961 -213823197 - MIR SINE MIR 0 262 43 459 239 103 19 chr3 4214031 4214186 -213822972 - MIR SINE MIR 0 262 95 2215 253 67 13 chr3 4214284 4214973 -213822185 + L1ME3 LINE L1 5429 6154 -8 198 317 35 103 chr3 4215013 4215158 -213822000 - L2 LINE L2 0 3313 3179 2053 117 0 7 chr3 4215370 4215660 -213821498 + AluSx SINE Alu 2 289 -23 225 0 0 0 chr3 4215666 4215691 -213821467 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 227 355 48 0 chr3 4216659 4216783 -213820375 + L2 LINE L2 2716 2845 -469 696 282 18 26 chr3 4217109 4217336 -213819822 - L1MEc LINE L1 -6117 279 55 529 276 17 17 chr3 4217881 4218055 -213819103 - MIR SINE MIR -1 261 88 25 51 0 0 chr3 4218205 4218244 -213818914 + AT_rich Low_complexity Low_complexity 1 39 0 2556 147 19 2 chr3 4218830 4219253 -213817905 + MSTB1 LTR MaLR 1 430 -2 186 209 0 0 chr3 4219575 4219618 -213817540 + CT-rich Low_complexity Low_complexity 1 43 0 1709 177 0 3 chr3 4219618 4220085 -213817073 - AluJo SINE Alu 0 466 1 481 343 122 34 chr3 4220229 4220696 -213816462 - L3 LINE CR1 -13 1564 1057 296 253 111 52 chr3 4221349 4221715 -213815443 + L1ME4a LINE L1 5536 6028 -93 2360 161 50 27 chr3 4224231 4224746 -213812412 - L1MB7 LINE L1 -3 6181 5655 274 282 182 9 chr3 4226041 4226151 -213811007 - MIR SINE MIR -26 236 108 292 271 25 76 chr3 4226827 4226945 -213810213 + MIR SINE MIR 12 123 -139 878 141 0 21 chr3 4227147 4227289 -213809869 + FLAM_C SINE Alu 3 141 -2 407 257 6 6 chr3 4227365 4227540 -213809618 + (TA)n Simple_repeat Simple_repeat 2 176 0 224 135 0 19 chr3 4227612 4227664 -213809494 + (TA)n Simple_repeat Simple_repeat 1 51 0 303 272 129 0 chr3 4227784 4227931 -213809227 - L1MC4 LINE L1 -372 7670 7505 538 287 148 26 chr3 4228536 4228766 -213808392 - MIR SINE MIR 0 262 5 1444 74 0 0 chr3 4230508 4230684 -213806474 - AluSg/x SINE Alu -49 263 88 2094 128 0 3 chr3 4230931 4231236 -213805922 + AluSx SINE Alu 1 304 -8 2299 107 0 0 chr3 4231457 4231765 -213805393 - AluSg SINE Alu -2 308 1 270 0 0 0 chr3 4232992 4233022 -213804136 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1971 132 0 0 chr3 4233024 4233304 -213803854 - AluSx SINE Alu -32 280 1 237 192 61 40 chr3 4235138 4235237 -213801921 + L1ME4a LINE L1 6021 6121 0 26 64 0 0 chr3 4235305 4235352 -213801806 + AT_rich Low_complexity Low_complexity 1 47 0 309 214 36 71 chr3 4235358 4235470 -213801688 - L1ME4a LINE L1 -198 5923 5816 532 311 12 6 chr3 4235857 4236021 -213801137 - MIR SINE MIR -68 194 30 859 130 7 0 chr3 4237012 4237150 -213800008 + L1PA15 LINE L1 6026 6164 -1 2625 7 0 0 chr3 4237156 4237506 -213799652 + AluYb8 SINE Alu 1 350 0 260 158 18 0 chr3 4238714 4238771 -213798387 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 200 287 230 0 chr3 4238864 4238951 -213798207 - L2 LINE L2 -19 3294 3188 185 306 54 54 chr3 4239214 4239325 -213797833 + MIR SINE MIR 145 255 -7 355 227 113 78 chr3 4239334 4239475 -213797683 + L2 LINE L2 2438 2583 -731 195 253 67 80 chr3 4239745 4239820 -213797338 + L3b LINE CR1 1510 1583 0 268 177 16 32 chr3 4240870 4240932 -213796226 - MARNA DNA Mariner -225 361 301 4901 181 32 16 chr3 4241108 4242126 -213795032 + L1MA4 LINE L1 3919 4953 -1193 3122 102 5 0 chr3 4242099 4242539 -213794619 + L1PB1 LINE L1 5709 6150 -1 * 5833 159 30 14 chr3 4242543 4243908 -213793250 + L1MA4 LINE L1 4903 6289 -11 184 359 123 0 chr3 4244077 4244183 -213792975 - L2 LINE L2 -3 3269 3151 858 281 123 28 chr3 4244274 4244673 -213792485 + MLT1J LTR MaLR 71 507 -4 2010 123 0 19 chr3 4246374 4246711 -213790447 + AluSx SINE Alu 1 331 0 781 196 78 44 chr3 4247011 4247215 -213789943 + MER20 DNA MER1_type 5 215 -4 2128 119 39 33 chr3 4247595 4247957 -213789201 + THE1B LTR MaLR 1 364 0 216 193 91 80 chr3 4247957 4248045 -213789113 + MIR SINE MIR 61 149 -113 351 274 156 30 chr3 4248329 4248464 -213788694 + MIR SINE MIR 70 221 -41 388 328 17 0 chr3 4248491 4248610 -213788548 - L2 LINE L2 -41 3272 3152 21 0 0 0 chr3 4248610 4248631 -213788527 + AT_rich Low_complexity Low_complexity 1 21 0 7054 86 11 6 chr3 4249037 4249319 -213787839 - L1P3 LINE L1 -388 5766 5487 189 0 0 0 chr3 4249319 4249340 -213787818 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 1983 120 3 7 chr3 4249340 4249623 -213787535 - AluSg SINE Alu -28 282 1 7054 86 11 6 chr3 4249623 4250768 -213786390 - L1P3 LINE L1 -666 5488 4335 * 9525 99 1 4 chr3 4250753 4252131 -213785027 - L1P3 LINE L1 -2297 3849 2477 6986 55 6 1 chr3 4252131 4253514 -213783644 + L1PA7 LINE L1 4766 6153 -1 903 196 0 0 chr3 4253600 4253768 -213783390 + AluJb SINE Alu 138 305 -7 220 220 0 0 chr3 4255376 4255426 -213781732 + (TTAAA)n Simple_repeat Simple_repeat 5 54 0 930 97 148 0 chr3 4256775 4256930 -213780228 - L1MA5A LINE L1 -45 6252 6075 207 258 32 16 chr3 4256931 4256993 -213780165 - MIR SINE MIR -105 157 95 263 329 12 24 chr3 4257061 4257146 -213780012 + MIR SINE MIR 16 99 -109 499 154 11 0 chr3 4258264 4258355 -213778803 - L1MA5A LINE L1 -2 6295 6204 522 283 87 6 chr3 4259233 4259406 -213777752 - L2 LINE L2 -8 3305 3119 224 247 41 27 chr3 4259446 4259519 -213777639 - L2 LINE L2 -313 3000 2927 182 243 0 0 chr3 4262038 4262075 -213775083 + L2 LINE L2 3227 3263 -9 1219 200 69 7 chr3 4262718 4263023 -213774135 - MER33 DNA MER1_type 0 324 1 1707 139 49 69 chr3 4263037 4263383 -213773775 + MER44D DNA MER2_type 1 609 0 1200 87 174 0 chr3 4263784 4263980 -213773178 + MER30 DNA MER1_type 1 230 0 438 72 87 14 chr3 4264898 4264967 -213772191 + L1PA11 LINE L1 6097 6170 -4 24 0 0 0 chr3 4265162 4265186 -213771972 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr3 4266262 4266293 -213770865 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr3 4266616 4266638 -213770520 + AT_rich Low_complexity Low_complexity 1 22 0 274 260 26 0 chr3 4266765 4266842 -213770316 + MER116 DNA Mariner 2 80 0 219 360 61 26 chr3 4266855 4266969 -213770189 - L3 LINE CR1 -1 1576 1459 248 313 70 0 chr3 4267777 4267892 -213769266 - MIR3 SINE MIR -24 184 62 2360 31 7 0 chr3 4268380 4268669 -213768489 + AluY SINE Alu 1 291 -20 22 35 0 0 chr3 4269202 4269231 -213767927 + AT_rich Low_complexity Low_complexity 1 29 0 882 180 12 0 chr3 4269910 4270077 -213767081 - FRAM SINE Alu -8 168 1 497 354 0 18 chr3 4270279 4270508 -213766650 + L2 LINE L2 2733 2957 -357 252 293 96 3 chr3 4271017 4271172 -213765986 - MIR SINE MIR -18 190 21 25 0 0 0 chr3 4271967 4271992 -213765166 + AT_rich Low_complexity Low_complexity 1 25 0 1820 105 35 0 chr3 4273013 4273270 -213763888 - AluSq SINE Alu -9 304 39 241 301 143 23 chr3 4273576 4273709 -213763449 + MIR3 SINE MIR 58 206 -2 463 287 67 22 chr3 4274605 4274828 -213762330 + L1ME LINE L1 5383 5615 -506 243 240 60 40 chr3 4274871 4274971 -213762187 + MIR SINE MIR 154 255 -7 21 36 0 0 chr3 4275140 4275168 -213761990 + AT_rich Low_complexity Low_complexity 1 28 0 643 182 22 29 chr3 4276126 4276391 -213760767 + MER33 DNA MER1_type 5 344 -19 1906 153 0 10 chr3 4276391 4276698 -213760460 - AluJo SINE Alu -4 308 5 196 319 264 0 chr3 4276944 4277035 -213760123 + MIR SINE MIR 25 139 -69 256 178 93 124 chr3 4277593 4277722 -213759436 + MIR SINE MIR 133 257 -5 255 289 74 8 chr3 4278719 4278840 -213758318 + MIR SINE MIR 92 220 -42 1256 242 43 3 chr3 4278887 4279213 -213757945 - MER58B DNA MER1_type -1 340 2 721 286 35 17 chr3 4280333 4280564 -213756594 + MIR SINE MIR 2 236 -26 277 303 49 17 chr3 4281387 4281515 -213755643 - MIR SINE MIR -69 139 18 2006 109 0 7 chr3 4281852 4282171 -213754987 - AluSg1 SINE Alu 0 318 2 2196 59 3 40 chr3 4282232 4282536 -213754622 - AluY SINE Alu -18 293 1 296 265 36 0 chr3 4282681 4282764 -213754394 - MIR SINE MIR -10 252 167 782 227 41 118 chr3 4282769 4283134 -213754024 - MER68 LTR ERV1 0 562 226 957 182 91 0 chr3 4283135 4283322 -213753836 + MER34C LTR ERV1 1 204 -381 230 289 13 0 chr3 4283358 4283434 -213753724 + LTR48 LTR ERV1 379 455 -332 990 175 74 23 chr3 4283634 4283851 -213753307 - MER68 LTR ERV1 -334 228 1 287 253 67 13 chr3 4283852 4283927 -213753231 - MIR SINE MIR -97 165 87 379 292 84 78 chr3 4283951 4284273 -213752885 - LTR16C LTR ERVL 0 491 168 308 175 0 0 chr3 4284778 4284841 -213752317 - L1MB7 LINE L1 -10 6174 6112 3799 193 40 29 chr3 4284877 4286034 -213751124 - L1MB7 LINE L1 -57 6127 4959 474 272 72 31 chr3 4286630 4286825 -213750333 - MIR SINE MIR -1 261 59 21 0 0 0 chr3 4287746 4287767 -213749391 + AT_rich Low_complexity Low_complexity 1 21 0 189 292 0 21 chr3 4288186 4288234 -213748924 - MER5A DNA MER1_type -41 148 102 932 202 0 22 chr3 4288853 4289031 -213748127 - FAM SINE Alu -1 174 1 220 351 15 37 chr3 4289274 4289408 -213747750 + L2 LINE L2 2920 3050 -263 218 326 116 14 chr3 4289420 4289558 -213747600 + L2 LINE L2 3158 3309 -4 259 103 103 17 chr3 4289625 4289683 -213747475 + L1ME4a LINE L1 6041 6103 -18 4645 78 8 2 chr3 4290853 4291485 -213745673 - L1PA14 LINE L1 0 6161 5526 2190 108 0 7 chr3 4291497 4291804 -213745354 - AluY SINE Alu -6 305 1 666 275 94 17 chr3 4291808 4292095 -213745063 + L1ME3A LINE L1 5521 5829 -341 25 31 0 0 chr3 4292457 4292489 -213744669 + AT_rich Low_complexity Low_complexity 1 32 0 443 304 112 6 chr3 4294092 4294253 -213742905 + MIR3 SINE MIR 16 193 -15 426 342 51 6 chr3 4294526 4294684 -213742474 + MER5B DNA MER1_type 8 172 -6 1955 168 40 6 chr3 4294733 4295085 -213742073 + THE1B LTR MaLR 1 364 0 1837 176 7 10 chr3 4295130 4295436 -213741722 + AluJo SINE Alu 1 305 -7 22 0 0 0 chr3 4295720 4295742 -213741416 + AT_rich Low_complexity Low_complexity 1 22 0 2296 140 75 10 chr3 4296024 4296424 -213740734 + MSTA LTR MaLR 3 428 0 407 273 12 61 chr3 4296870 4297035 -213740123 - L2 LINE L2 -600 2714 2558 249 292 66 29 chr3 4297121 4297258 -213739900 - L1MC/D LINE L1 -1905 5903 5762 477 297 60 78 chr3 4297385 4297668 -213739490 - MLT1I LTR MaLR 0 409 132 193 213 85 0 chr3 4297949 4297996 -213739162 + MIR SINE MIR 111 161 -101 551 266 77 27 chr3 4298022 4298244 -213738914 + MLT1J2 LTR MaLR 59 291 -159 284 214 14 14 chr3 4298275 4298345 -213738813 + MLT1J2 LTR MaLR 376 445 -5 6327 150 17 18 chr3 4298345 4299464 -213737694 - Tigger1 DNA MER2_type 0 2418 1301 6451 135 54 14 chr3 4299466 4300580 -213736578 - Tigger1 DNA MER2_type -1260 1158 1 244 347 116 0 chr3 4301757 4301852 -213735306 - L2 LINE L2 -21 3251 3146 236 127 16 48 chr3 4302011 4302074 -213735084 + (TTATA)n Simple_repeat Simple_repeat 1 61 0 32 67 0 0 chr3 4302129 4302189 -213734969 + AT_rich Low_complexity Low_complexity 1 60 0 23 54 0 0 chr3 4302420 4302457 -213734701 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr3 4304242 4304263 -213732895 + AT_rich Low_complexity Low_complexity 1 21 0 1910 127 7 39 chr3 4304271 4304579 -213732579 + AluSx SINE Alu 1 298 -14 310 389 0 16 chr3 4304653 4304779 -213732379 + MIR3 SINE MIR 34 157 -51 350 280 65 11 chr3 4304964 4305057 -213732101 - MIR SINE MIR -81 127 30 24 0 0 0 chr3 4305421 4305445 -213731713 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr3 4305634 4305659 -213731499 + AT_rich Low_complexity Low_complexity 1 25 0 290 244 47 71 chr3 4306745 4306801 -213730357 - MIR SINE MIR -54 208 152 865 191 30 78 chr3 4306801 4307031 -213730127 - MER20 DNA MER1_type 0 219 1 290 244 47 71 chr3 4307031 4307101 -213730057 - MIR SINE MIR -110 152 85 674 318 173 41 chr3 4307106 4307833 -213729325 + L2 LINE L2 2462 3308 -5 26 0 0 0 chr3 4307953 4307979 -213729179 + AT_rich Low_complexity Low_complexity 1 26 0 195 69 0 0 chr3 4308049 4308078 -213729080 + (CA)n Simple_repeat Simple_repeat 1 29 0 22 0 0 0 chr3 4308751 4308773 -213728385 + AT_rich Low_complexity Low_complexity 1 22 0 1963 127 3 42 chr3 4309362 4309669 -213727489 - AluSx SINE Alu -15 297 3 351 318 59 42 chr3 4309746 4309985 -213727173 + MIR SINE MIR 7 249 -13 2294 96 3 10 chr3 4310328 4310642 -213726516 - AluSp SINE Alu -1 312 1 200 191 0 24 chr3 4310865 4310907 -213726251 + L2 LINE L2 3265 3305 -8 2814 167 6 28 chr3 4311888 4312427 -213724731 + L1MA7 LINE L1 5565 6091 -200 2126 202 49 14 chr3 4312442 4312888 -213724270 - MLT1C LTR MaLR -5 462 1 358 188 115 79 chr3 4312902 4312922 -213724236 - L1MC4 LINE L1 -92 7950 7932 1816 173 10 0 chr3 4312922 4313223 -213723935 - AluJb SINE Alu -8 304 1 358 188 115 79 chr3 4313223 4313367 -213723791 - L1MC4 LINE L1 -110 7932 7780 1860 156 23 7 chr3 4313385 4313692 -213723466 - MER7A DNA MER2_type -1 345 36 401 208 0 26 chr3 4313689 4313766 -213723392 - MER7A DNA MER2_type -272 76 2 * 456 285 37 49 chr3 4313766 4314012 -213723146 - L1MC4 LINE L1 -216 7779 7549 21 0 0 0 chr3 4314565 4314586 -213722572 + AT_rich Low_complexity Low_complexity 1 21 0 1876 34 0 0 chr3 4314739 4314972 -213722186 - L1P LINE L1 -776 5370 5138 5828 35 4 0 chr3 4314972 4315663 -213721495 + L1PA5 LINE L1 5436 6143 -11 207 235 0 0 chr3 4315663 4315714 -213721444 + (TA)n Simple_repeat Simple_repeat 2 52 0 787 121 0 57 chr3 4316172 4316313 -213720845 + FLAM_A SINE Alu 1 133 0 386 125 0 14 chr3 4316526 4316598 -213720560 + (TG)n Simple_repeat Simple_repeat 1 71 0 195 69 0 0 chr3 4317072 4317101 -213720057 + (CA)n Simple_repeat Simple_repeat 2 30 0 7448 36 5 0 chr3 4319982 4321470 -213715688 + L1PA5 LINE L1 4659 6150 -4 1087 237 71 40 chr3 4322506 4322860 -213714298 - MLT1A1 LTR MaLR 0 365 1 1745 158 3 52 chr3 4323123 4323433 -213713725 + AluJb SINE Alu 6 300 -12 448 169 48 32 chr3 4324151 4324275 -213712883 - LTR37A LTR ERV1 0 426 301 283 239 30 0 chr3 4324275 4324342 -213712816 - L2 LINE L2 -765 2549 2481 224 100 25 0 chr3 4325098 4325138 -213712020 + (TG)n Simple_repeat Simple_repeat 2 42 0 196 308 117 25 chr3 4325812 4325932 -213711226 + MIR3 SINE MIR 4 134 -74 286 269 157 60 chr3 4326947 4327163 -213709995 + MIR SINE MIR 20 256 -6 1043 219 88 3 chr3 4327333 4327630 -213709528 + MER33 DNA MER1_type 2 323 -1 204 294 109 22 chr3 4328666 4328758 -213708400 - MIR SINE MIR -78 130 31 1292 161 0 5 chr3 4329493 4329710 -213707448 + MLT2C2 LTR ERVL 1 216 -248 408 20 0 0 chr3 4329711 4329760 -213707398 + (CA)n Simple_repeat Simple_repeat 2 50 0 245 246 98 0 chr3 4330772 4330894 -213706264 + MER113 DNA MER1_type? 1 134 -387 332 299 28 28 chr3 4331226 4331370 -213705788 + L3 LINE CR1 1262 1405 -172 348 267 12 0 chr3 4332295 4332361 -213704797 + MLT1A1 LTR MaLR 3 69 -305 2042 169 91 0 chr3 4332361 4332734 -213704424 + MSTA LTR MaLR 1 407 -21 1660 189 7 3 chr3 4332787 4333089 -213704069 + MLT1A1 LTR MaLR 63 365 0 23 0 0 0 chr3 4333539 4333562 -213703596 + AT_rich Low_complexity Low_complexity 1 23 0 371 227 109 31 chr3 4333622 4333750 -213703408 - MIR SINE MIR -73 189 52 354 348 66 31 chr3 4334440 4334759 -213702399 + L2 LINE L2 2430 2759 -555 2884 88 2 0 chr3 4334846 4335242 -213701916 - L1PB2 LINE L1 -1 6150 5754 605 203 144 20 chr3 4335353 4335506 -213701652 - MER5A DNA MER1_type 0 189 18 249 248 50 40 chr3 4336182 4336283 -213700875 - L1M4 LINE L1 -408 5776 5675 857 327 107 52 chr3 4336806 4337058 -213700100 - L1M4 LINE L1 -1527 4619 4382 2492 55 0 0 chr3 4337058 4337366 -213699792 - AluY SINE Alu -3 308 1 857 327 107 52 chr3 4337366 4337707 -213699451 - L1M4 LINE L1 -1764 4382 4061 2272 39 32 0 chr3 4337707 4337990 -213699168 + AluY SINE Alu 1 292 -19 857 327 107 52 chr3 4337990 4339260 -213697898 - L1M4 LINE L1 -2085 4061 2652 1178 206 95 27 chr3 4339266 4339528 -213697630 - AluJo SINE Alu -30 282 3 28 0 0 0 chr3 4340318 4340346 -213696812 + AT_rich Low_complexity Low_complexity 1 28 0 385 178 100 0 chr3 4340350 4340440 -213696718 - L1MA9 LINE L1 -44 6268 6170 21 36 0 0 chr3 4340856 4340884 -213696274 + AT_rich Low_complexity Low_complexity 1 28 0 272 305 78 43 chr3 4340902 4341043 -213696115 + MER5B DNA MER1_type 5 150 -28 528 99 0 77 chr3 4341094 4341185 -213695973 - L1MA9 LINE L1 -837 5475 5392 3757 154 20 70 chr3 4341185 4342036 -213695122 + L1MA9 LINE L1 5492 6312 0 2309 107 0 0 chr3 4342054 4342363 -213694795 - AluSq SINE Alu -4 309 1 315 333 21 21 chr3 4342571 4342808 -213694350 - HAL1 LINE L1 -847 1660 1424 204 318 85 64 chr3 4343517 4343737 -213693421 - MIR SINE MIR -6 256 17 239 304 173 52 chr3 4343749 4343940 -213693218 - MIR SINE MIR -48 214 1 244 325 0 24 chr3 4343967 4344050 -213693108 - L3b LINE CR1 -253 1330 1250 24 0 0 0 chr3 4345976 4346000 -213691158 + AT_rich Low_complexity Low_complexity 1 24 0 2371 80 0 0 chr3 4346704 4347022 -213690136 + AluY SINE Alu 1 318 0 1678 103 157 4 chr3 4347780 4348042 -213689116 - AluSq SINE Alu 0 303 2 2535 52 3 3 chr3 4348285 4348591 -213688567 - AluY SINE Alu -5 306 1 2160 98 3 3 chr3 4349196 4349483 -213687675 - AluSg SINE Alu -23 287 1 466 303 141 29 chr3 4351584 4351861 -213685297 + L2 LINE L2 3003 3310 -3 1967 138 14 0 chr3 4353025 4353308 -213683850 + AluSx SINE Alu 1 287 -25 206 349 0 64 chr3 4356657 4356766 -213680392 - L2 LINE L2 -173 3099 2998 189 0 0 0 chr3 4356944 4356965 -213680193 + (A)n Simple_repeat Simple_repeat 1 21 0 2268 83 3 0 chr3 4357135 4357484 -213679674 + AluYb8 SINE Alu 1 350 0 884 213 0 24 chr3 4358831 4359000 -213678158 - FAM SINE Alu -10 165 1 499 275 76 28 chr3 4359269 4359480 -213677678 - MLT1J2 LTR MaLR -171 279 59 190 213 85 0 chr3 4359506 4359553 -213677605 - MIR SINE MIR -101 161 111 471 297 60 78 chr3 4359834 4360117 -213677041 + MLT1I LTR MaLR 132 409 0 234 292 66 29 chr3 4360244 4360381 -213676777 + L1MC/D LINE L1 5762 5903 -1905 411 273 12 61 chr3 4360467 4360632 -213676526 + L2 LINE L2 2558 2714 -600 2326 140 75 10 chr3 4361078 4361478 -213675680 - MSTA LTR MaLR 0 428 3 22 0 0 0 chr3 4361760 4361782 -213675376 + AT_rich Low_complexity Low_complexity 1 22 0 1859 176 7 10 chr3 4362066 4362372 -213674786 - AluJo SINE Alu -7 305 1 1977 168 40 6 chr3 4362417 4362769 -213674389 - THE1B LTR MaLR 0 364 1 420 342 51 6 chr3 4362818 4362976 -213674182 - MER5B DNA MER1_type -6 172 8 445 304 112 6 chr3 4363249 4363410 -213673748 - MIR3 SINE MIR -15 193 16 25 31 0 0 chr3 4365013 4365045 -213672113 + AT_rich Low_complexity Low_complexity 1 32 0 651 275 94 17 chr3 4365407 4365694 -213671464 - L1ME3A LINE L1 -341 5829 5521 2168 112 0 7 chr3 4365698 4366002 -213671156 + AluY SINE Alu 1 302 -9 4676 76 8 2 chr3 4366014 4366646 -213670512 + L1PA14 LINE L1 5526 6161 0 254 103 103 17 chr3 4367818 4367876 -213669282 - L1ME4a LINE L1 -18 6103 6041 214 326 116 14 chr3 4367943 4368081 -213669077 - L2 LINE L2 -4 3309 3158 222 351 15 37 chr3 4368093 4368227 -213668931 - L2 LINE L2 -263 3050 2920 946 202 0 22 chr3 4368470 4368648 -213668510 + FAM SINE Alu 1 174 -1 21 0 0 0 chr3 4369734 4369755 -213667403 + AT_rich Low_complexity Low_complexity 1 21 0 466 272 72 31 chr3 4370676 4370871 -213666287 + MIR SINE MIR 59 261 -1 3676 197 37 26 chr3 4371467 4372622 -213664536 + L1MB7 LINE L1 4959 6127 -57 301 175 0 0 chr3 4372658 4372721 -213664437 + L1MB7 LINE L1 6112 6174 -10 292 231 107 39 chr3 4373638 4373894 -213663264 - L1ME4a LINE L1 -220 5901 5536 457 343 122 34 chr3 4374549 4375016 -213662142 + L3 LINE CR1 1057 1564 -13 2292 95 10 3 chr3 4375161 4375465 -213661693 + AluSq SINE Alu 1 306 -7 814 231 177 3 chr3 4375465 4375759 -213661399 + MLT1I LTR MaLR 65 409 0 306 323 60 26 chr3 4375905 4376403 -213660755 + L1MDa LINE L1 1400 1875 -868 21 0 0 0 chr3 4376476 4376497 -213660661 + AT_rich Low_complexity Low_complexity 1 21 0 229 380 71 5 chr3 4377152 4377336 -213659822 + L2 LINE L2 3118 3313 0 2121 123 0 13 chr3 4378299 4378600 -213658558 + AluSg SINE Alu 1 297 -13 2114 183 47 10 chr3 4378700 4379105 -213658053 + MSTB LTR MaLR 1 420 -6 3666 119 60 28 chr3 4379124 4379738 -213657420 - MER51A LTR ERV1 0 634 1 1665 171 32 20 chr3 4379784 4380029 -213657129 - L1MB7 LINE L1 -15 6169 5917 2471 105 19 8 chr3 4380029 4380400 -213656758 - THE1C LTR MaLR 0 375 1 1665 171 32 20 chr3 4380400 4380498 -213656660 - L1MB7 LINE L1 -267 5917 5822 206 209 90 45 chr3 4380638 4380705 -213656453 - MIR SINE MIR -88 174 105 420 269 88 18 chr3 4380952 4381123 -213656035 - Charlie8 DNA MER1_type -2161 256 74 312 310 44 0 chr3 4381411 4381524 -213655634 - L2 LINE L2 -1 3271 3154 419 242 167 0 chr3 4381948 4382068 -213655090 + MLT1H LTR MaLR 405 544 -5 342 0 0 0 chr3 4382138 4382176 -213654982 + (TC)n Simple_repeat Simple_repeat 2 39 0 270 0 0 0 chr3 4382175 4382205 -213654953 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 1036 200 16 5 chr3 4382213 4382403 -213654755 - AluJb SINE Alu -32 280 89 1428 216 71 31 chr3 4382685 4383134 -213654024 + MLT1C LTR MaLR 1 467 0 2084 142 3 0 chr3 4485637 4485948 -213551210 + AluSx SINE Alu 1 312 0 200 262 98 0 chr3 4486777 4486838 -213550320 + MIR SINE MIR 80 146 -116 8443 125 6 17 chr3 4487579 4488961 -213548197 - L1P LINE L1 -795 5351 3985 180 111 0 0 chr3 4490467 4490494 -213546664 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 243 377 57 0 chr3 4490687 4490809 -213546349 + MIR SINE MIR 39 167 -95 277 333 44 9 chr3 4490935 4491049 -213546109 - MIR3 SINE MIR -24 184 67 1136 242 79 0 chr3 4491084 4491427 -213545731 + L1MD3 LINE L1 3586 3955 -2191 646 193 28 7 chr3 4491456 4491601 -213545557 + MLT2D LTR ERVL 71 218 -196 1404 252 97 11 chr3 4491604 4492143 -213545015 + L1MD3 LINE L1 4776 5360 -786 1495 198 104 18 chr3 4492146 4493203 -213543955 + L1MD3 LINE L1 5464 6428 -1567 321 26 0 0 chr3 4493203 4493241 -213543917 + (CA)n Simple_repeat Simple_repeat 2 39 0 1495 198 104 18 chr3 4493241 4494243 -213542915 + L1MD3 LINE L1 6428 7995 0 336 247 216 6 chr3 4494256 4494418 -213542740 + MIR SINE MIR 67 262 0 291 350 8 8 chr3 4495372 4495489 -213541669 - L2 LINE L2 -6 3266 3150 15404 48 7 2 chr3 4496218 4498931 -213538227 - L1PA5 LINE L1 0 6154 3431 306 125 21 0 chr3 4498981 4499029 -213538129 - MADE1 DNA Mariner 0 80 32 215 318 20 80 chr3 4499977 4500128 -213537030 + MIR SINE MIR 10 151 -111 765 222 13 0 chr3 4500170 4500323 -213536835 + MER63A DNA MER1_type 50 204 -6 202 212 23 23 chr3 4502941 4502989 -213534169 - MIR SINE MIR -106 102 54 471 226 144 5 chr3 4504083 4504278 -213532880 - L1M4 LINE L1 -846 5300 5079 688 182 25 19 chr3 4504303 4504462 -213532696 + MER33 DNA MER1_type 15 174 -150 256 238 48 0 chr3 4504468 4504573 -213532585 - L1MCc LINE L1 -4910 652 543 2259 112 3 0 chr3 4504604 4504916 -213532242 - AluSq SINE Alu 0 313 1 1253 281 89 53 chr3 4505615 4505725 -213531433 + MLT1E3 LTR MaLR 1 106 -518 1442 169 93 37 chr3 4505725 4506080 -213531078 + THE1C LTR MaLR 1 375 0 1253 281 89 53 chr3 4506080 4506567 -213530591 + MLT1E3 LTR MaLR 106 619 -5 32 26 0 0 chr3 4506635 4506674 -213530484 + AT_rich Low_complexity Low_complexity 1 39 0 351 372 51 60 chr3 4507597 4508011 -213529147 - L2 LINE L2 -6 3266 2857 604 236 106 25 chr3 4508068 4508305 -213528853 + MER5C DNA MER1_type 1 256 -68 293 288 254 0 chr3 4509416 4509558 -213527600 + MIR SINE MIR 37 213 -49 320 254 56 16 chr3 4509650 4509776 -213527382 + MER104 DNA Tc2 26 156 -24 2290 113 0 3 chr3 4509952 4510261 -213526897 - AluSg SINE Alu -2 308 1 444 125 48 19 chr3 4510263 4510367 -213526791 - L1PA8 LINE L1 0 6172 6066 246 32 0 0 chr3 4510812 4510843 -213526315 + (CA)n Simple_repeat Simple_repeat 1 31 0 2120 113 0 26 chr3 4511648 4511957 -213525201 - AluSx SINE Alu -11 301 1 2360 71 3 0 chr3 4512396 4512704 -213524454 + AluY SINE Alu 1 309 -2 727 131 37 0 chr3 4513351 4513458 -213523700 - MER4B LTR ERV1 0 610 500 21 36 0 0 chr3 4513681 4513709 -213523449 + AT_rich Low_complexity Low_complexity 1 28 0 2854 204 60 48 chr3 4513793 4514675 -213522483 - L1MC4 LINE L1 -214 7828 6936 1792 241 97 11 chr3 4514740 4515378 -213521780 - L1M4 LINE L1 -979 5167 4475 1253 295 45 14 chr3 4515443 4515884 -213521274 - L1MCc LINE L1 -5589 481 27 441 229 10 0 chr3 4516206 4516302 -213520856 + MER5A DNA MER1_type 10 106 -83 1669 138 160 9 chr3 4517873 4518191 -213518967 - MSTA LTR MaLR 0 428 63 210 306 178 22 chr3 4518231 4518411 -213518747 + L2 LINE L2 2889 3096 -217 974 241 106 20 chr3 4518441 4518744 -213518414 - MLT2D LTR ERVL -8 406 78 317 309 0 73 chr3 4518854 4518990 -213518168 + L2 LINE L2 3167 3292 -21 2101 122 0 4 chr3 4519019 4519298 -213517860 - AluSx SINE Alu -30 282 5 379 110 132 55 chr3 4519482 4519573 -213517585 + MER4A LTR ERV1 1 98 -566 1197 147 96 97 chr3 4519573 4519931 -213517227 + MER4A LTR ERV1 261 664 0 1973 158 24 3 chr3 4520198 4520704 -213516454 + L1M1 LINE L1 5072 5585 -720 1753 168 14 0 chr3 4520779 4521065 -213516093 + LTR10B LTR ERV1 258 547 0 1049 249 89 4 chr3 4521065 4521334 -213515824 + LTR10B-int LTR ERV1 5 296 -6353 * 10369 244 19 32 chr3 4521330 4524572 -213512586 + BaEV-int LTR ERV1 4185 6649 0 1608 205 14 7 chr3 4524647 4524935 -213512223 + LTR10B LTR ERV1 258 547 0 4163 114 35 31 chr3 4524935 4525332 -213511826 + L1MA2 LINE L1 5582 5985 -319 2090 125 26 0 chr3 4525332 4525636 -213511522 + AluSp SINE Alu 1 312 -1 4163 114 35 31 chr3 4525636 4525958 -213511200 + L1MA2 LINE L1 5985 6304 0 311 304 61 9 chr3 4526250 4526365 -213510793 - MIR3 SINE MIR -54 154 34 316 257 81 0 chr3 4526427 4526501 -213510657 - L2 LINE L2 -1 3312 3233 1995 154 3 0 chr3 4527689 4528000 -213509158 + AluSx SINE Alu 1 312 0 364 235 163 60 chr3 4528270 4528436 -213508722 - MER20 DNA MER1_type -27 192 10 498 114 0 0 chr3 4528870 4528940 -213508218 - AluJ/FRAM SINE Alu -17 295 226 316 288 62 0 chr3 4529733 4529893 -213507265 + L1MC4a LINE L1 4890 5059 -1087 425 355 84 12 chr3 4530073 4530561 -213506597 + L1MC4a LINE L1 5308 5830 -1978 267 167 139 0 chr3 4530962 4531034 -213506124 - MIR SINE MIR -3 259 178 270 306 41 10 chr3 4532846 4532944 -213504214 + MLT1L LTR MaLR 165 265 -350 220 304 43 0 chr3 4534164 4534233 -213502925 - L2 LINE L2 0 3272 3201 564 56 0 0 chr3 4534457 4534529 -213502629 + (GGAA)n Simple_repeat Simple_repeat 4 75 0 26 0 0 0 chr3 4535833 4535859 -213501299 + AT_rich Low_complexity Low_complexity 1 26 0 497 292 49 15 chr3 4535863 4536130 -213501028 - L1MC5 LINE L1 -212 7749 7474 228 226 19 0 chr3 4536167 4536220 -213500938 + L2 LINE L2 3217 3270 -2 206 291 0 0 chr3 4536531 4536586 -213500572 + L2 LINE L2 3244 3298 -15 776 329 80 6 chr3 4538606 4538968 -213498190 + LTR16C LTR ERVL 96 484 -7 357 233 0 29 chr3 4540920 4541023 -213496135 - LTR67 LTR ERVL -6 551 452 322 286 32 84 chr3 4543014 4543168 -213493990 + MIR3 SINE MIR 36 181 -27 382 305 241 12 chr3 4544310 4544559 -213492599 + L2 LINE L2 3006 3311 -2 228 67 0 0 chr3 4544559 4544589 -213492569 + (TGGA)n Simple_repeat Simple_repeat 4 33 0 225 296 21 63 chr3 4544828 4544970 -213492188 - L3b LINE CR1 -131 1452 1317 21 0 0 0 chr3 4545293 4545314 -213491844 + AT_rich Low_complexity Low_complexity 1 21 0 237 139 0 0 chr3 4545567 4545610 -213491548 + (CA)n Simple_repeat Simple_repeat 2 44 0 6991 51 38 0 chr3 4545733 4546693 -213490465 - L1PA6 LINE L1 -7 6147 5184 896 230 5 5 chr3 4546741 4546928 -213490230 + MER58A DNA MER1_type 34 220 -4 8009 13 0 0 chr3 4547241 4548843 -213488315 - L1HS LINE L1 0 6155 4554 453 330 76 21 chr3 4548911 4549202 -213487956 + L2 LINE L2 2159 2465 -849 618 291 180 26 chr3 4549202 4549634 -213487524 - L1MEd LINE L1 -4908 1211 838 1582 110 12 31 chr3 4549634 4549888 -213487270 - AluSq SINE Alu 0 313 65 618 291 180 26 chr3 4549888 4549959 -213487199 - L1MEd LINE L1 -5281 838 779 21 0 0 0 chr3 4550025 4550046 -213487112 + AT_rich Low_complexity Low_complexity 1 21 0 673 223 0 0 chr3 4550091 4550212 -213486946 - FLAM_A SINE Alu -12 121 1 398 305 123 57 chr3 4550284 4550800 -213486358 + L2 LINE L2 2683 3239 -74 647 183 8 16 chr3 4550800 4550926 -213486232 - FLAM_A SINE Alu -4 129 5 398 305 123 57 chr3 4550926 4550994 -213486164 + L2 LINE L2 3239 3301 -12 201 74 0 0 chr3 4551847 4551874 -213485284 + (TA)n Simple_repeat Simple_repeat 1 27 0 1062 139 41 0 chr3 4551874 4552046 -213485112 - AluSg/x SINE Alu 0 312 134 204 350 122 50 chr3 4552085 4552265 -213484893 - MIR SINE MIR -50 212 20 253 282 118 47 chr3 4552636 4552806 -213484352 + MER5A DNA MER1_type 7 188 -1 622 286 104 50 chr3 4554448 4554850 -213482308 + HAL1b LINE L1 344 574 -774 22 35 0 0 chr3 4555417 4555446 -213481712 + AT_rich Low_complexity Low_complexity 1 29 0 479 183 104 24 chr3 4555654 4555818 -213481340 - MER104 DNA MER2_type -3 177 1 318 185 8 100 chr3 4556486 4556616 -213480542 + L1ME4a LINE L1 5966 6083 -38 6700 126 20 53 chr3 4556662 4557934 -213479224 + Tigger3b DNA MER2_type 3 1231 0 302 240 0 94 chr3 4557934 4558030 -213479128 + L1MC4 LINE L1 6617 6703 -1339 243 0 0 0 chr3 4558030 4558057 -213479101 + (TA)n Simple_repeat Simple_repeat 1 27 0 696 183 72 20 chr3 4558588 4558741 -213478417 + MER5A DNA MER1_type 1 161 -28 369 75 0 0 chr3 4558861 4558914 -213478244 + (CA)n Simple_repeat Simple_repeat 2 54 0 312 71 0 0 chr3 4559276 4559318 -213477840 - L1MA10 LINE L1 -10 6324 6283 378 165 13 13 chr3 4559318 4559397 -213477761 + L1MB1 LINE L1 6004 6082 -107 677 159 0 0 chr3 4559461 4559568 -213477590 - AluJb SINE Alu -205 107 1 25 0 0 0 chr3 4559827 4559852 -213477306 + AT_rich Low_complexity Low_complexity 1 25 0 1482 122 215 4 chr3 4559888 4560134 -213477024 + AluSg1 SINE Alu 1 298 -11 549 326 73 55 chr3 4560159 4560542 -213476616 + L2 LINE L2 2919 3308 -5 899 203 115 5 chr3 4560567 4560759 -213476399 - MER58A DNA MER1_type -1 223 11 284 93 0 0 chr3 4560932 4560975 -213476183 - MADE1 DNA Mariner -37 43 1 1279 167 8 16 chr3 4560975 4561232 -213475926 - L1MC3 LINE L1 -24 7761 7507 195 358 20 54 chr3 4561433 4561581 -213475577 + MIR SINE MIR 70 212 -50 925 183 30 35 chr3 4562418 4562620 -213474538 + MER3 DNA MER1_type 9 209 0 448 281 191 20 chr3 4563258 4563457 -213473701 - MIR SINE MIR -6 256 24 528 286 5 77 chr3 4563903 4564167 -213472991 - MIR SINE MIR -8 254 13 195 250 0 0 chr3 4564340 4564380 -213472778 - MIR SINE MIR -73 135 96 438 20 0 0 chr3 4565984 4566035 -213471123 + (CA)n Simple_repeat Simple_repeat 2 52 0 398 309 172 0 chr3 4566813 4567017 -213470141 - MIR SINE MIR -6 256 18 2164 57 4 0 chr3 4568027 4568349 -213468809 - AluY SINE Alu 0 323 1 696 242 55 0 chr3 4568489 4568654 -213468504 + MER5A DNA MER1_type 15 188 -1 2435 52 10 0 chr3 4568883 4569191 -213467967 - AluY SINE Alu 0 311 1 273 128 0 0 chr3 4571462 4571509 -213465649 + (TTCC)n Simple_repeat Simple_repeat 1 47 0 1817 173 7 0 chr3 4571798 4572098 -213465060 - AluJb SINE Alu -10 302 1 809 284 103 36 chr3 4572799 4573923 -213463235 - L1ME LINE L1 -486 5684 4487 5486 176 22 9 chr3 4573934 4575434 -213461724 - L1MA4 LINE L1 0 6482 4967 657 151 0 0 chr3 4575434 4575553 -213461605 + CT-rich Low_complexity Low_complexity 4 122 0 1716 162 22 22 chr3 4575578 4575948 -213461210 - L1MA4 LINE L1 -1355 4973 4604 2097 121 0 0 chr3 4575950 4576251 -213460907 - AluSg SINE Alu 0 301 1 9000 119 6 16 chr3 4576259 4578498 -213458660 - L1PA10 LINE L1 0 6168 3942 7882 180 21 28 chr3 4578506 4580174 -213456984 - L1PA10 LINE L1 -3571 2575 920 3955 171 24 13 chr3 4580176 4581016 -213456142 - L1MA4 LINE L1 -1701 4627 3779 2665 143 56 78 chr3 4581002 4581256 -213455902 - L1MA4 LINE L1 -4065 1263 1005 * 225 0 48 48 chr3 4581256 4581298 -213455860 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 1728 176 4 4 chr3 4581299 4581578 -213455580 - AluJb SINE Alu -33 279 1 2665 143 56 78 chr3 4581578 4581707 -213455451 - L1MA4 LINE L1 -4323 1005 875 1622 196 0 19 chr3 4581707 4582024 -213455134 - AluJb SINE Alu -1 311 1 2665 143 56 78 chr3 4582024 4582397 -213454761 - L1MA4 LINE L1 -4453 875 680 539 202 25 10 chr3 4582398 4582662 -213454496 + CT-rich Low_complexity Low_complexity 1 267 0 3719 196 38 6 chr3 4582664 4583352 -213453806 - L1MA4 LINE L1 -4609 719 10 24 53 0 0 chr3 4583486 4583524 -213453634 + AT_rich Low_complexity Low_complexity 1 38 0 507 318 74 56 chr3 4583525 4584063 -213453095 - L1MEd LINE L1 -5306 813 266 343 214 48 68 chr3 4584155 4584199 -213452959 - MER5A DNA MER1_type -77 112 69 312 27 0 0 chr3 4584199 4584236 -213452922 + (TG)n Simple_repeat Simple_repeat 2 38 0 343 214 48 68 chr3 4584236 4584294 -213452864 - MER5A DNA MER1_type -120 69 12 190 205 26 0 chr3 4584714 4584753 -213452405 + L2 LINE L2 3221 3260 -12 379 296 51 23 chr3 4584759 4584935 -213452223 + MIR SINE MIR 17 197 -65 21 0 0 0 chr3 4585015 4585036 -213452122 + AT_rich Low_complexity Low_complexity 1 21 0 277 277 0 0 chr3 4585117 4585129 -213452029 + MER3 DNA MER1_type 37 48 -161 811 212 0 32 chr3 4585129 4585200 -213451958 - MER3 DNA MER1_type -1 208 136 1564 161 94 25 chr3 4585200 4585486 -213451672 + AluJb SINE Alu 1 306 -6 811 212 0 32 chr3 4585486 4585603 -213451555 - MER3 DNA MER1_type -73 136 26 260 174 0 0 chr3 4586934 4586980 -213450178 + L2 LINE L2 3223 3268 -4 2029 106 0 0 chr3 4589125 4589389 -213447769 + AluY SINE Alu 32 295 -16 23 0 0 0 chr3 4590105 4590128 -213447030 + AT_rich Low_complexity Low_complexity 1 23 0 220 302 94 10 chr3 4590820 4590916 -213446242 + L2 LINE L2 3206 3309 -4 491 218 73 8 chr3 4592263 4592387 -213444771 - MER39 LTR ERV1 -575 132 1 535 288 23 28 chr3 4592392 4592569 -213444589 + MIR SINE MIR 79 254 -8 791 242 102 25 chr3 4594330 4594837 -213442321 - MLT1G1 LTR MaLR -1 589 1 744 296 9 5 chr3 4595116 4595332 -213441826 + MIR SINE MIR 46 262 0 847 308 83 11 chr3 4596297 4596840 -213440318 + MLT2F LTR ERVL 1 663 0 2102 138 21 0 chr3 4596953 4597278 -213439880 - Tigger2a DNA MER2_type 0 434 103 1208 118 0 0 chr3 4597320 4597490 -213439668 + AluY SINE Alu 132 301 -10 7235 40 15 0 chr3 4597493 4598458 -213438700 + L1PA5 LINE L1 5175 6152 -2 613 179 0 8 chr3 4598484 4598601 -213438557 - Tigger2a DNA MER2_type -317 117 2 678 314 105 32 chr3 4598640 4599115 -213438043 + L2 LINE L2 2804 3313 0 361 317 0 19 chr3 4600280 4600384 -213436774 + L2 LINE L2 3154 3255 -17 539 276 0 6 chr3 4601367 4601523 -213435635 - L1ME3 LINE L1 -5 6157 6003 462 261 48 35 chr3 4601537 4601847 -213435311 - L1MEc LINE L1 -2803 3623 3310 2036 207 22 12 chr3 4601852 4602258 -213434900 + MER47B DNA MER2_type 1 410 -8 2904 147 36 8 chr3 4602264 4602767 -213434391 + Tigger3(Golem) DNA MER2_type 2513 3029 0 303 121 11 17 chr3 4602767 4602835 -213434323 - L1MA7 LINE L1 -187 6104 6038 387 297 10 35 chr3 4602841 4603043 -213434115 - L1MCa LINE L1 -1923 4503 4307 464 356 25 22 chr3 4603176 4603493 -213433665 - L1MCa LINE L1 -2222 4204 3887 355 293 33 14 chr3 4603528 4603719 -213433439 - L1MCa LINE L1 -2697 3729 3534 1163 158 51 111 chr3 4603783 4604140 -213433018 + MER21A LTR ERV1 1 365 -498 467 221 116 53 chr3 4604297 4604600 -213432558 - L1MCa LINE L1 -4801 1625 1304 30 27 0 0 chr3 4604645 4604682 -213432476 + AT_rich Low_complexity Low_complexity 1 37 0 453 229 46 106 chr3 4604739 4605041 -213432117 + MLT1H LTR MaLR 228 511 -38 399 315 51 30 chr3 4605093 4605328 -213431830 - L1MEc LINE L1 -4277 2330 2091 728 211 65 60 chr3 4605353 4605400 -213431758 + MER58A DNA MER1_type 37 82 -2338 1102 209 73 48 chr3 4605400 4605754 -213431404 + MLT1A1 LTR MaLR 1 363 -2 728 211 65 60 chr3 4605754 4605891 -213431267 + MER58A DNA MER1_type 82 222 -2 492 276 120 31 chr3 4605957 4606497 -213430661 - L1MEc LINE L1 -4732 1694 1107 1640 180 23 3 chr3 4606636 4606936 -213430222 - AluJb SINE Alu -6 306 1 317 348 62 12 chr3 4606968 4607129 -213430029 - L1MEc LINE L1 -6013 594 426 418 51 0 17 chr3 4607389 4607448 -213429710 + (CA)n Simple_repeat Simple_repeat 2 59 0 1708 191 0 3 chr3 4607644 4607948 -213429210 - AluJo SINE Alu -9 303 1 184 320 26 26 chr3 4608747 4608825 -213428333 - MIR SINE MIR -26 236 159 367 225 0 0 chr3 4609277 4609348 -213427810 - MIR SINE MIR -115 147 77 280 230 27 0 chr3 4609603 4609677 -213427481 + MIR SINE MIR 184 259 -3 225 368 123 0 chr3 4609846 4609960 -213427198 - L2 LINE L2 -8 3264 3137 27 0 0 0 chr3 4609980 4610007 -213427151 + AT_rich Low_complexity Low_complexity 1 27 0 2602 125 0 0 chr3 4610308 4610683 -213426475 - THE1C LTR MaLR 0 375 1 3264 247 74 44 chr3 4613116 4613980 -213423178 + L1MC4 LINE L1 6459 7371 -671 1228 202 132 0 chr3 4613980 4614238 -213422920 - AluJo SINE Alu -7 295 4 3264 247 74 44 chr3 4614238 4614594 -213422564 + L1MC4 LINE L1 7371 7715 -327 395 303 30 30 chr3 4615038 4615203 -213421955 + MIR SINE MIR 9 173 -89 2002 117 3 36 chr3 4615400 4615709 -213421449 - AluSx SINE Alu -13 299 1 297 356 0 0 chr3 4615729 4615816 -213421342 - L2 LINE L2 0 3313 3227 528 312 12 18 chr3 4615969 4616139 -213421019 - MIR SINE MIR -65 197 29 214 267 120 13 chr3 4617150 4617225 -213419933 + MER5A DNA MER1_type 34 116 -73 10649 96 9 4 chr3 4617530 4619848 -213417310 - L1PA7 LINE L1 -13 6141 3815 6746 112 8 2 chr3 4619848 4620888 -213416270 - L1PA7 LINE L1 -2751 3395 2350 23900 98 15 8 chr3 4620889 4625267 -213411891 - L1PA7 LINE L1 0 6469 2067 3542 113 12 0 chr3 4625273 4625775 -213411383 - L1PA7 LINE L1 -5262 1199 692 272 297 36 27 chr3 4625775 4625886 -213411272 - MIR SINE MIR -61 147 36 1845 144 34 42 chr3 4627087 4627497 -213409661 - L1MA4 LINE L1 0 6300 5894 597 165 0 10 chr3 4627497 4627600 -213409558 + L1 LINE L1 4871 4972 -1174 239 62 125 21 chr3 4627600 4627648 -213409510 - MLT2A2 LTR ERVL 0 453 401 369 158 0 0 chr3 4627649 4627731 -213409427 + (TA)n Simple_repeat Simple_repeat 2 83 0 2640 72 0 0 chr3 4627733 4628078 -213409080 + HERVL-A1 LTR ERVL 5310 5654 0 2688 108 23 8 chr3 4628078 4628476 -213408682 + MLT2A1 LTR ERVL 1 404 -40 485 224 11 17 chr3 4628487 4628666 -213408492 + (TA)n Simple_repeat Simple_repeat 2 179 0 41160 70 12 5 chr3 4628823 4633643 -213403515 - HERVL LTR ERVL -331 5323 465 2027 135 26 3 chr3 4633643 4633947 -213403211 + AluSq SINE Alu 1 311 -2 41160 70 12 5 chr3 4633947 4634415 -213402743 - HERVL LTR ERVL -5189 465 1 323 57 0 22 chr3 4634415 4634468 -213402690 - MLT2A2 LTR ERVL 0 453 411 190 265 0 20 chr3 4635163 4635212 -213401946 - L2 LINE L2 -16 3256 3209 2435 52 10 0 chr3 4635673 4635981 -213401177 + AluY SINE Alu 1 311 0 696 242 55 0 chr3 4636210 4636375 -213400783 - MER5A DNA MER1_type -1 188 15 2165 57 4 0 chr3 4636515 4636837 -213400321 + AluY SINE Alu 1 323 0 398 309 172 0 chr3 4637847 4638051 -213399107 + MIR SINE MIR 18 256 -6 438 20 0 0 chr3 4638829 4638880 -213398278 + (TG)n Simple_repeat Simple_repeat 2 52 0 195 250 0 0 chr3 4640484 4640524 -213396634 + MIR SINE MIR 96 135 -73 528 286 5 77 chr3 4640697 4640961 -213396197 + MIR SINE MIR 13 254 -8 448 281 191 20 chr3 4641407 4641606 -213395552 + MIR SINE MIR 24 256 -6 925 183 30 35 chr3 4642244 4642446 -213394712 - MER3 DNA MER1_type 0 209 9 195 358 20 54 chr3 4643283 4643431 -213393727 - MIR SINE MIR -50 212 70 1279 167 8 16 chr3 4643632 4643889 -213393269 + L1MC3 LINE L1 7507 7761 -24 284 93 0 0 chr3 4643889 4643932 -213393226 + MADE1 DNA Mariner 1 43 -37 899 203 115 5 chr3 4644105 4644297 -213392861 + MER58A DNA MER1_type 11 223 -1 549 326 73 55 chr3 4644322 4644705 -213392453 - L2 LINE L2 -5 3308 2919 1482 122 215 4 chr3 4644730 4644976 -213392182 - AluSg1 SINE Alu -11 298 1 25 0 0 0 chr3 4645012 4645037 -213392121 + AT_rich Low_complexity Low_complexity 1 25 0 677 159 0 0 chr3 4645296 4645403 -213391755 + AluJb SINE Alu 1 107 -205 392 161 12 12 chr3 4645467 4645548 -213391610 - L1MB1 LINE L1 -107 6082 6002 312 71 0 0 chr3 4645548 4645588 -213391570 + L1MA10 LINE L1 6283 6324 -10 369 75 0 0 chr3 4645950 4646003 -213391155 + (TG)n Simple_repeat Simple_repeat 2 54 0 696 183 72 20 chr3 4646123 4646276 -213390882 - MER5A DNA MER1_type -28 161 1 243 0 0 0 chr3 4646807 4646834 -213390324 + (TA)n Simple_repeat Simple_repeat 1 27 0 302 240 0 94 chr3 4646834 4646930 -213390228 - L1MC4 LINE L1 -1339 6703 6617 6700 126 20 53 chr3 4646930 4648202 -213388956 - Tigger3b DNA MER2_type 0 1231 3 318 185 8 100 chr3 4648248 4648378 -213388780 - L1ME4a LINE L1 -38 6083 5966 479 183 104 24 chr3 4649046 4649210 -213387948 + MER104 DNA MER2_type 1 177 -3 22 35 0 0 chr3 4649418 4649447 -213387711 + AT_rich Low_complexity Low_complexity 1 29 0 622 286 104 50 chr3 4650014 4650416 -213386742 - HAL1b LINE L1 -774 574 344 253 282 118 47 chr3 4652058 4652228 -213384930 - MER5A DNA MER1_type -1 188 7 204 350 122 50 chr3 4652599 4652779 -213384379 + MIR SINE MIR 20 212 -50 1062 139 41 0 chr3 4652818 4652990 -213384168 + AluSg/x SINE Alu 134 312 0 201 74 0 0 chr3 4652990 4653017 -213384141 + (TA)n Simple_repeat Simple_repeat 2 28 0 425 306 123 56 chr3 4653868 4653936 -213383222 - L2 LINE L2 -12 3301 3239 647 183 8 16 chr3 4653936 4654062 -213383096 + FLAM_A SINE Alu 5 129 -4 425 306 123 56 chr3 4654062 4654577 -213382581 - L2 LINE L2 -74 3239 2683 673 223 0 0 chr3 4654649 4654770 -213382388 + FLAM_A SINE Alu 1 121 -12 21 0 0 0 chr3 4654815 4654836 -213382322 + AT_rich Low_complexity Low_complexity 1 21 0 618 291 180 26 chr3 4654902 4654973 -213382185 + L1MEd LINE L1 779 838 -5281 1582 110 12 31 chr3 4654973 4655227 -213381931 + AluSq SINE Alu 65 313 0 618 291 180 26 chr3 4655227 4655659 -213381499 + L1MEd LINE L1 838 1211 -4908 453 330 76 21 chr3 4655659 4655950 -213381208 - L2 LINE L2 -849 2465 2159 8050 12 0 0 chr3 4656018 4657620 -213379538 + L1HS LINE L1 4554 6155 0 934 226 5 5 chr3 4657931 4658121 -213379037 - MER58A DNA MER1_type -1 223 34 31 0 0 0 chr3 4658729 4658760 -213378398 + AT_rich Low_complexity Low_complexity 1 31 0 2081 105 4 0 chr3 4658779 4659055 -213378103 - AluSq SINE Alu -36 277 1 2219 201 62 67 chr3 4659134 4659717 -213377441 + L1MDa LINE L1 26 605 -5935 39 50 0 0 chr3 4659817 4659877 -213377281 + AT_rich Low_complexity Low_complexity 1 60 0 53 30 0 0 chr3 4660842 4660909 -213376249 + AT_rich Low_complexity Low_complexity 1 67 0 25 31 0 0 chr3 4661288 4661320 -213375838 + AT_rich Low_complexity Low_complexity 1 32 0 237 196 0 0 chr3 4661989 4662045 -213375113 + (CACCAT)n Simple_repeat Simple_repeat 4 59 0 329 275 25 0 chr3 4662542 4662622 -213374536 - L2 LINE L2 0 3313 3232 1046 113 94 6 chr3 4663109 4663269 -213373889 - AluSq SINE Alu -11 302 129 21 0 0 0 chr3 4663643 4663664 -213373494 + AT_rich Low_complexity Low_complexity 1 21 0 625 264 121 5 chr3 4663948 4664403 -213372755 - MLT1K LTR MaLR -6 582 24 384 251 106 67 chr3 4665330 4665509 -213371649 - MIR SINE MIR 0 262 77 213 343 14 0 chr3 4665800 4665870 -213371288 + L2 LINE L2 3200 3270 -2 297 250 29 0 chr3 4667736 4667804 -213369354 - MIR SINE MIR -8 254 185 258 347 88 7 chr3 4667845 4667992 -213369166 + MIR3 SINE MIR 38 196 -12 1774 152 0 71 chr3 4668087 4668410 -213368748 + AluJb SINE Alu 1 300 -12 291 259 19 83 chr3 4668545 4668578 -213368580 - MER102a DNA MER1_type -1099 318 284 2127 177 50 17 chr3 4668578 4668996 -213368162 + MSTB1 LTR MaLR 1 432 0 291 259 19 83 chr3 4668996 4669070 -213368088 - MER102a DNA MER1_type -1133 284 218 1979 129 0 36 chr3 4669224 4669533 -213367625 - AluSx SINE Alu -14 298 1 978 116 0 0 chr3 4669545 4669674 -213367484 - AluSq SINE Alu -183 129 1 180 0 0 0 chr3 4670597 4670617 -213366541 + (T)n Simple_repeat Simple_repeat 1 20 0 28 0 0 0 chr3 4671600 4671628 -213365530 + AT_rich Low_complexity Low_complexity 1 28 0 457 315 99 9 chr3 4672203 4672425 -213364733 - MIR SINE MIR -15 247 6 272 247 13 13 chr3 4672928 4673005 -213364153 + MLT1I LTR MaLR 329 405 -4 401 319 14 35 chr3 4674664 4674808 -213362350 + MER91A DNA MER1_type 2 142 -54 200 304 0 18 chr3 4674856 4674912 -213362246 + MER91A DNA MER1_type 133 187 -3 342 67 0 0 chr3 4675295 4675340 -213361818 + (A)n Simple_repeat Simple_repeat 1 45 0 243 306 194 0 chr3 4675499 4675597 -213361561 + L2 LINE L2 3197 3313 0 624 284 74 16 chr3 4675881 4676124 -213361034 - MIR SINE MIR 0 262 6 446 339 27 27 chr3 4676638 4676821 -213360337 + MER5A DNA MER1_type 2 184 -5 336 255 20 41 chr3 4676842 4676940 -213360218 - MIR3 SINE MIR -37 171 76 201 356 7 68 chr3 4677544 4677690 -213359468 - MIR3 SINE MIR -13 195 59 229 278 11 100 chr3 4677770 4677860 -213359298 - MIR SINE MIR -130 132 51 1467 206 4 4 chr3 4678862 4679129 -213358029 + AluJb SINE Alu 30 296 -16 2012 144 0 0 chr3 4679755 4680046 -213357112 - AluSx SINE Alu -11 301 11 22 0 0 0 chr3 4680649 4680671 -213356487 + AT_rich Low_complexity Low_complexity 1 22 0 1941 192 11 8 chr3 4681321 4681685 -213355473 - MLT1A1 LTR MaLR 0 365 1 319 360 97 23 chr3 4681860 4682160 -213354998 + L2 LINE L2 1735 2056 -1258 347 329 0 0 chr3 4682245 4682324 -213354834 - MER91A DNA MER1_type -116 80 2 288 260 84 58 chr3 4682482 4682636 -213354522 + HAL1b LINE L1 750 907 -441 263 374 39 39 chr3 4682954 4683310 -213353848 - L2 LINE L2 -595 2719 2364 24 0 0 0 chr3 4683946 4683970 -213353188 + AT_rich Low_complexity Low_complexity 1 24 0 1206 283 45 21 chr3 4684000 4684424 -213352734 - MLT1J1 LTR MaLR -11 435 2 267 31 0 0 chr3 4684649 4684681 -213352477 + (CA)n Simple_repeat Simple_repeat 1 32 0 3023 162 0 6 chr3 4685232 4685721 -213351437 + MER66B LTR ERV1 1 486 0 2078 121 0 3 chr3 4686064 4686370 -213350788 - AluSx SINE Alu 0 307 3 2389 69 13 3 chr3 4686419 4686722 -213350436 - AluSg SINE Alu -4 306 1 376 244 12 0 chr3 4686802 4686888 -213350270 + MLT1J1 LTR MaLR 240 326 -120 640 276 82 9 chr3 4686943 4687321 -213349837 - MLT1J1 LTR MaLR -13 424 1 335 335 112 28 chr3 4688006 4688221 -213348937 + MIR SINE MIR 30 262 0 1572 184 10 16 chr3 4688436 4688727 -213348431 + AluJo SINE Alu 1 291 -21 186 43 0 0 chr3 4688727 4688750 -213348408 + (GA)n Simple_repeat Simple_repeat 2 24 0 1572 184 10 16 chr3 4688750 4688763 -213348395 + AluJo SINE Alu 291 303 -9 25 90 0 0 chr3 4689288 4689355 -213347803 + AT_rich Low_complexity Low_complexity 1 67 0 352 338 7 28 chr3 4689804 4689946 -213347212 + MIR SINE MIR 8 146 -116 241 314 183 22 chr3 4690134 4690271 -213346887 + MLT1J2 LTR MaLR 254 412 -38 23 0 0 0 chr3 4691401 4691424 -213345734 + AT_rich Low_complexity Low_complexity 1 23 0 36 53 0 0 chr3 4691552 4691609 -213345549 + AT_rich Low_complexity Low_complexity 1 57 0 4216 148 7 44 chr3 4691683 4692501 -213344657 - L1PA16 LINE L1 -2 6164 5377 273 139 18 4 chr3 4692524 4692581 -213344577 + AluJo SINE Alu 85 136 -166 561 248 83 0 chr3 4692584 4692729 -213344429 + FAM SINE Alu 1 157 -18 3974 144 30 7 chr3 4692745 4693482 -213343676 - Tigger3b DNA MER2_type -477 754 1 236 318 34 34 chr3 4693535 4693623 -213343535 + MIR SINE MIR 32 119 -89 639 191 79 20 chr3 4693653 4693805 -213343353 + MLT1A2 LTR MaLR 1 161 -213 414 0 0 0 chr3 4693826 4693872 -213343286 + (TC)n Simple_repeat Simple_repeat 1 46 0 748 212 19 66 chr3 4693897 4694109 -213343049 + MLT1A2 LTR MaLR 173 374 0 21 36 0 0 chr3 4694756 4694784 -213342374 + AT_rich Low_complexity Low_complexity 1 28 0 476 255 24 34 chr3 4694813 4695021 -213342137 - L1MC/D LINE L1 -1989 5819 5614 22 56 0 0 chr3 4697205 4697241 -213339917 + AT_rich Low_complexity Low_complexity 1 36 0 1939 173 0 0 chr3 4697352 4697658 -213339500 - AluJo SINE Alu -5 307 2 1295 303 48 32 chr3 4697676 4698306 -213338852 + MLT2F LTR ERVL 18 657 -6 26 50 0 0 chr3 4698438 4698478 -213338680 + AT_rich Low_complexity Low_complexity 1 40 0 259 265 73 15 chr3 4698493 4698561 -213338597 + MIR SINE MIR 29 100 -108 2814 13 0 0 chr3 4698927 4699237 -213337921 + AluY SINE Alu 1 310 -1 356 333 50 6 chr3 4700094 4700253 -213336905 - MIR SINE MIR -12 250 85 180 0 0 0 chr3 4700293 4700313 -213336845 + (A)n Simple_repeat Simple_repeat 1 20 0 519 159 24 56 chr3 4700373 4700388 -213336770 - MER53 DNA DNA -67 122 108 2303 189 38 6 chr3 4700388 4700884 -213336274 - MER67D LTR ERV1 -2 512 1 519 159 24 56 chr3 4700884 4700994 -213336164 - MER53 DNA DNA -81 108 1 296 350 8 8 chr3 4702100 4702217 -213334941 - L2 LINE L2 -6 3266 3150 7446 121 21 15 chr3 4702946 4704999 -213332159 - L1PA5 LINE L1 0 6154 4092 1309 168 196 0 chr3 4705209 4705355 -213331803 - AluJo SINE Alu -13 299 183 2119 102 16 7 chr3 4705355 4705658 -213331500 - AluY SINE Alu -5 306 1 1309 168 196 0 chr3 4705658 4705761 -213331397 - AluJo SINE Alu -129 183 1 2051 204 51 44 chr3 4705761 4706311 -213330847 + MLT2B3 LTR ERVL 1 554 0 747 215 82 0 chr3 4706321 4706540 -213330618 - L1M4 LINE L1 -2929 3217 2981 992 120 0 0 chr3 4706573 4706706 -213330452 - AluSq/x SINE Alu -179 133 1 889 183 27 47 chr3 4706733 4706884 -213330274 - L1M4 LINE L1 -3170 2976 2831 1138 217 19 86 chr3 4706884 4707198 -213329960 - AluJb SINE Alu -8 294 2 889 183 27 47 chr3 4707198 4707303 -213329855 - L1M4 LINE L1 -3315 2831 2725 439 304 60 0 chr3 4707319 4707487 -213329671 + L1M4 LINE L1 3656 3833 -2313 2294 93 21 0 chr3 4707487 4707778 -213329380 - AluSg1 SINE Alu -12 297 1 1652 85 16 0 chr3 4707778 4708025 -213329133 - PABL_A-int LTR ERV1 -4546 469 219 439 255 10 0 chr3 4708143 4708241 -213328917 - MIR SINE MIR -154 108 10 907 143 0 0 chr3 4710337 4710470 -213326688 + FLAM_C SINE Alu 1 133 -10 2291 88 7 0 chr3 4710476 4710770 -213326388 + AluSp SINE Alu 1 296 -17 2516 40 3 0 chr3 4711200 4711497 -213325661 - AluY SINE Alu -13 298 1 312 27 0 0 chr3 4713531 4713568 -213323590 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 909 202 51 88 chr3 4715025 4715082 -213322076 - L1M4 LINE L1 -1481 4665 4607 2309 96 3 10 chr3 4715082 4715383 -213321775 + AluSp SINE Alu 1 299 -14 909 202 51 88 chr3 4715383 4715735 -213321423 - L1M4 LINE L1 -1539 4607 4271 455 315 80 5 chr3 4718377 4718577 -213318581 + MIR SINE MIR 48 262 0 2440 162 35 56 chr3 4718967 4719846 -213317312 - L1M4 LINE L1 -439 5745 4856 1863 152 7 14 chr3 4719846 4720167 -213316991 - AluJb SINE Alu 0 319 1 247 313 119 0 chr3 4720546 4720613 -213316545 + MIR SINE MIR 15 89 -173 694 171 8 8 chr3 4720615 4720732 -213316426 + FLAM_C SINE Alu 2 118 -25 2262 39 0 4 chr3 4720739 4720998 -213316160 + AluY SINE Alu 40 297 -14 305 231 196 42 chr3 4721044 4721187 -213315971 - L2 LINE L2 -3 3310 3146 204 342 13 0 chr3 4821821 4821900 -213215258 - MIR SINE MIR -59 149 70 3562 119 12 2 chr3 4822236 4822742 -213214416 - L1PB3 LINE L1 0 6154 5644 812 84 0 19 chr3 4822782 4822889 -213214269 - FLAM_A SINE Alu -16 126 22 1887 128 16 26 chr3 4823735 4824041 -213213117 + AluSx SINE Alu 1 303 -9 533 218 247 6 chr3 4824041 4824211 -213212947 + MIR SINE MIR 51 261 -1 351 278 32 24 chr3 4824666 4824792 -213212366 + MIR SINE MIR 20 146 -116 222 338 13 0 chr3 4826804 4826881 -213210277 - MIR SINE MIR -63 145 68 186 293 35 0 chr3 4827610 4827668 -213209490 + MIR3 SINE MIR 112 171 -37 376 303 141 15 chr3 4828375 4828573 -213208585 - MIR SINE MIR 0 262 40 203 79 26 0 chr3 4829591 4829629 -213207529 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1002 146 189 5 chr3 4830472 4830657 -213206501 - MER20 DNA MER1_type 0 219 1 23 0 0 0 chr3 4830820 4830843 -213206315 + AT_rich Low_complexity Low_complexity 1 23 0 2289 112 0 0 chr3 4830871 4831174 -213205984 - AluSx SINE Alu -9 303 1 315 365 0 0 chr3 4831330 4831445 -213205713 - MIR3 SINE MIR -23 185 71 298 163 0 0 chr3 4831445 4831494 -213205664 + L1MC3 LINE L1 7045 7093 -692 291 262 24 12 chr3 4831498 4831582 -213205576 + MLT1F1 LTR MaLR 40 124 -443 2180 187 74 71 chr3 4831583 4832178 -213204980 + L1MC3 LINE L1 7189 7785 0 2220 112 0 13 chr3 4832966 4833269 -213203889 - AluSx SINE Alu -13 299 1 2094 121 0 0 chr3 4834270 4834575 -213202583 + AluSx SINE Alu 1 305 0 520 281 67 12 chr3 4834989 4835153 -213202005 - MER5B DNA MER1_type 0 178 6 276 87 0 43 chr3 4835865 4835911 -213201247 + L2 LINE L2 3195 3238 -75 2162 112 3 0 chr3 4836523 4836818 -213200340 + AluSp SINE Alu 1 296 -17 372 363 57 6 chr3 4837006 4837163 -213199995 - MIR3 SINE MIR -24 184 20 28 0 0 0 chr3 4837271 4837299 -213199859 + AT_rich Low_complexity Low_complexity 1 28 0 1742 190 7 3 chr3 4837347 4837642 -213199516 + AluSx SINE Alu 1 296 -16 2539 123 5 32 chr3 4841153 4841527 -213195631 - THE1B LTR MaLR 0 364 1 8333 128 30 8 chr3 4841856 4843168 -213193990 - Tigger1 DNA MER2_type 0 2418 1079 3672 135 107 6 chr3 4843157 4843793 -213193365 - Tigger1 DNA MER2_type -1656 762 63 * 279 284 0 0 chr3 4845272 4845346 -213191812 + C-rich Low_complexity Low_complexity 1 74 0 1675 112 0 16 chr3 4845873 4846115 -213191043 + AluSg/x SINE Alu 73 310 -2 1148 198 105 0 chr3 4846123 4846381 -213190777 - L1M4 LINE L1 -1073 5073 4789 277 180 16 141 chr3 4846802 4846930 -213190228 + MLT1H LTR MaLR 438 549 0 376 249 115 91 chr3 4847018 4847076 -213190082 - L1ME4a LINE L1 -232 5889 5834 1887 135 7 0 chr3 4847076 4847357 -213189801 + AluSg SINE Alu 13 295 -15 376 249 115 91 chr3 4847357 4847551 -213189607 - L1ME4a LINE L1 -287 5834 5631 2097 109 10 7 chr3 4847798 4848092 -213189066 + AluSq SINE Alu 1 295 -18 185 0 0 39 chr3 4848197 4848223 -213188935 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 209 173 154 19 chr3 4848310 4848362 -213188796 + L2 LINE L2 3252 3310 -3 2240 100 0 3 chr3 4848382 4848671 -213188487 + AluSx SINE Alu 1 288 -24 276 284 0 68 chr3 4851467 4851555 -213185603 - L2 LINE L2 -23 3249 3168 213 39 0 0 chr3 4852741 4852767 -213184391 + (TTG)n Simple_repeat Simple_repeat 2 27 0 248 385 57 0 chr3 4853963 4854085 -213183073 + MIR SINE MIR 21 149 -113 1029 186 9 24 chr3 4855669 4855810 -213181348 + MER3 DNA MER1_type 2 141 -68 1936 143 7 7 chr3 4855810 4856097 -213181061 + AluSx SINE Alu 1 287 -25 1029 186 9 24 chr3 4856097 4856165 -213180993 + MER3 DNA MER1_type 141 208 -1 299 269 86 30 chr3 4856259 4856493 -213180665 + L1ME4a LINE L1 5873 6119 -2 685 224 39 86 chr3 4856580 4856835 -213180323 + MER112 DNA MER1_type 6 248 -12 1263 124 0 43 chr3 4856966 4857152 -213180006 + AluSx SINE Alu 1 178 -134 424 246 53 18 chr3 4857815 4857929 -213179229 + MIR3 SINE MIR 14 131 -77 1856 145 35 0 chr3 4858953 4859125 -213178033 - AluSx SINE Alu -13 299 112 387 0 0 0 chr3 4859125 4859168 -213177990 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1856 145 35 0 chr3 4859168 4859284 -213177874 - AluSx SINE Alu -200 112 1 257 109 455 0 chr3 4859673 4859728 -213177430 + MADE1 DNA Mariner 1 80 0 2170 100 7 0 chr3 4860179 4860490 -213176668 + AluSx SINE Alu 1 313 0 1900 167 0 0 chr3 4860509 4860797 -213176361 - AluJb SINE Alu -19 293 6 939 117 7 15 chr3 4860797 4860934 -213176224 - AluJb SINE Alu -176 136 1 339 314 58 19 chr3 4861092 4861248 -213175910 - MIR3 SINE MIR -8 200 39 2003 140 10 0 chr3 4861444 4861737 -213175421 + AluSx SINE Alu 1 296 -16 210 333 0 43 chr3 4862312 4862381 -213174777 - L3 LINE CR1 -4 1573 1508 981 195 20 20 chr3 4862440 4862640 -213174518 - MER20 DNA MER1_type -19 200 1 760 222 102 9 chr3 4863080 4863296 -213173862 + MIR SINE MIR 14 249 -13 206 310 113 0 chr3 4863645 4863716 -213173442 + MIR SINE MIR 29 107 -155 2308 97 0 3 chr3 4863851 4864161 -213172997 - AluY SINE Alu -2 309 1 236 250 62 38 chr3 4864265 4864345 -213172813 - MIR SINE MIR -81 127 46 2135 116 3 16 chr3 4865139 4865449 -213171709 + AluSx SINE Alu 4 309 -3 3241 160 30 3 chr3 4865450 4866056 -213171102 + L1MB2 LINE L1 5550 6171 0 544 241 195 0 chr3 4866111 4866285 -213170873 - MIR SINE MIR -6 256 49 557 268 87 70 chr3 4866561 4866860 -213170298 - MER5C DNA MER1_type 0 324 21 259 348 38 52 chr3 4867052 4867262 -213169896 - L2 LINE L2 -544 2770 2564 1616 191 68 28 chr3 4868206 4868403 -213168755 - L1MD2 LINE L1 -1 6358 6170 2260 107 3 0 chr3 4868403 4868713 -213168445 - AluSx SINE Alu -1 311 1 1616 191 68 28 chr3 4868713 4868914 -213168244 - L1MD2 LINE L1 -189 6170 5944 279 245 96 11 chr3 4868914 4869008 -213168150 + MER69 DNA AcHobo 2425 2526 0 2523 53 0 22 chr3 4869290 4869608 -213167550 + AluY SINE Alu 1 311 0 181 317 99 49 chr3 4869790 4869932 -213167226 + MIR SINE MIR 3 151 -111 22 0 0 0 chr3 4869999 4870021 -213167137 + AT_rich Low_complexity Low_complexity 1 22 0 212 315 23 62 chr3 4870056 4870185 -213166973 - MIR SINE MIR -75 133 2 1873 72 103 4 chr3 4870256 4870518 -213166640 + AluSc SINE Alu 5 292 -17 280 217 0 17 chr3 4870872 4870932 -213166226 + MER91 DNA MER1_type 81 139 -1 209 296 14 28 chr3 4871557 4871628 -213165530 + MIR SINE MIR 20 89 -119 232 235 123 0 chr3 4871817 4871898 -213165260 + MIR3 SINE MIR 102 192 -16 292 211 273 19 chr3 4872657 4872818 -213164340 - L1MC4a LINE L1 -1859 5949 5748 1688 80 0 0 chr3 4872953 4873166 -213163992 + AluSg SINE Alu 1 213 -97 348 236 183 21 chr3 4873208 4873399 -213163759 - L1MC4a LINE L1 -2291 5517 5296 547 300 143 29 chr3 4873435 4873979 -213163179 - L1MC4a LINE L1 -908 5238 4633 26 0 0 0 chr3 4874250 4874276 -213162882 + AT_rich Low_complexity Low_complexity 1 26 0 360 232 36 94 chr3 4875337 4875445 -213161713 + L2 LINE L2 3182 3282 -31 2557 98 30 6 chr3 4875445 4875811 -213161347 - THE1C LTR MaLR 0 375 1 360 232 36 94 chr3 4875811 4875840 -213161318 + L2 LINE L2 3282 3311 -2 563 280 13 13 chr3 4875844 4875994 -213161164 + MIR SINE MIR 34 183 -79 1688 188 40 3 chr3 4876247 4876572 -213160586 + MER1B DNA MER1_type 1 337 0 245 295 105 11 chr3 4876663 4876758 -213160400 - L3 LINE CR1 -278 1299 1196 275 282 57 0 chr3 4877345 4877469 -213159689 - L1MC/D LINE L1 -1983 5825 5695 235 254 211 7 chr3 4877506 4877648 -213159510 - L1MC/D LINE L1 -1445 4701 4531 1890 151 18 0 chr3 4878544 4878829 -213158329 + AluJb SINE Alu 9 298 -14 256 267 67 33 chr3 4879069 4879159 -213157999 + MIR SINE MIR 13 105 -157 1055 130 0 34 chr3 4882312 4882489 -213154669 + AluSg/x SINE Alu 124 294 -15 428 255 135 20 chr3 4887610 4887810 -213149348 - MIR SINE MIR -9 253 31 258 282 0 113 chr3 4888320 4888444 -213148714 - MIR3 SINE MIR -12 196 87 2430 69 3 0 chr3 4889113 4889417 -213147741 - AluY SINE Alu -6 305 1 265 368 60 8 chr3 4889527 4889644 -213147514 + L2 LINE L2 3191 3313 0 240 274 140 18 chr3 4890711 4890768 -213146390 + L1MC/D LINE L1 5352 5401 -2407 1682 152 72 4 chr3 4890768 4891045 -213146113 - AluSx SINE Alu -16 296 1 240 274 140 18 chr3 4891045 4891151 -213146007 + L1MC/D LINE L1 5401 5535 -2273 462 306 0 0 chr3 4891323 4891434 -213145724 - MER81 DNA DNA 0 114 4 714 254 215 0 chr3 4892153 4892358 -213144800 + MIR SINE MIR 6 254 -8 388 352 49 6 chr3 4892626 4892788 -213144370 + MIR SINE MIR 81 249 -13 427 315 34 0 chr3 4893090 4893236 -213143922 + MER117 DNA MER1_type 11 161 -36 220 214 18 18 chr3 4893283 4893339 -213143819 + (TG)n Simple_repeat Simple_repeat 1 56 0 487 227 302 0 chr3 4893383 4893555 -213143603 - MIR SINE MIR -10 252 29 2189 71 39 3 chr3 4893557 4893840 -213143318 - AluY SINE Alu -18 293 1 1877 154 3 13 chr3 4894612 4894923 -213142235 + AluJb SINE Alu 1 308 -4 206 342 57 19 chr3 4894940 4895098 -213142060 - L2 LINE L2 -192 3080 2917 432 288 113 19 chr3 4895440 4895652 -213141506 + HAL1 LINE L1 434 665 -1842 383 306 89 0 chr3 4895839 4896120 -213141038 + HAL1 LINE L1 984 1289 -1218 1643 249 190 30 chr3 4896124 4896951 -213140207 + HAL1 LINE L1 1340 2298 -209 212 292 79 22 chr3 4897471 4897560 -213139598 - MIR3 SINE MIR -25 183 90 2125 141 13 0 chr3 4897691 4897997 -213139161 + AluJo SINE Alu 1 310 -2 1474 206 109 43 chr3 4898350 4898856 -213138302 + MER90 LTR ERV1 70 608 -6 474 204 160 18 chr3 4899463 4899688 -213137470 + MER112 DNA MER1_type 4 260 0 1683 161 17 30 chr3 4901073 4901372 -213135786 - AluJb SINE Alu -17 295 1 7603 15 0 0 chr3 4901944 4903177 -213133981 - L1HS LINE L1 0 6155 4923 688 129 103 189 chr3 4903413 4903547 -213133611 + MER33 DNA MER1_type 1 145 -2440 1752 171 20 3 chr3 4903547 4903840 -213133318 - AluJb SINE Alu -14 298 1 688 129 103 189 chr3 4903840 4904055 -213133103 + MER33 DNA MER1_type 145 320 -4 534 236 48 36 chr3 4904282 4904447 -213132711 - MER5B DNA MER1_type -1 177 11 293 367 17 0 chr3 4904735 4904855 -213132303 + MIR SINE MIR 8 129 -133 860 131 77 0 chr3 4905044 4905174 -213131984 - FRAM SINE Alu -17 159 20 583 99 148 10 chr3 4905223 4905324 -213131834 + FLAM_C SINE Alu 5 119 -24 23 0 0 0 chr3 4905329 4905352 -213131806 + AT_rich Low_complexity Low_complexity 1 23 0 4246 91 21 21 chr3 4905823 4906014 -213131144 + PABL_A LTR ERV1 1 191 -469 2343 93 0 7 chr3 4906014 4906324 -213130834 - AluSx SINE Alu -4 308 1 4246 91 21 21 chr3 4906324 4906783 -213130375 + PABL_A LTR ERV1 190 651 -9 1742 97 45 0 chr3 4908391 4908659 -213128499 - AluSq SINE Alu -9 304 25 888 210 189 7 chr3 4909247 4909461 -213127697 + MER2 DNA MER2_type 1 283 -61 2305 92 0 0 chr3 4909461 4909756 -213127402 - AluSx SINE Alu -13 299 5 888 210 189 7 chr3 4909756 4909832 -213127326 + MER2 DNA MER2_type 283 344 0 308 64 21 0 chr3 4909832 4909879 -213127279 + (GA)n Simple_repeat Simple_repeat 1 48 0 2595 258 52 18 chr3 4909907 4910937 -213126221 + L1ME1 LINE L1 3292 4356 -1790 1546 193 14 14 chr3 4911039 4911324 -213125834 + AluJb SINE Alu 1 285 -27 22 0 0 0 chr3 4911324 4911346 -213125812 + AT_rich Low_complexity Low_complexity 1 22 0 2477 233 26 51 chr3 4911346 4911386 -213125772 + L1ME1 LINE L1 5403 5443 -723 2053 131 7 0 chr3 4911386 4911677 -213125481 - AluSg SINE Alu -17 293 1 2477 233 26 51 chr3 4911677 4912180 -213124978 + L1ME1 LINE L1 5443 5957 -209 2189 113 0 0 chr3 4912180 4912473 -213124685 + AluSg SINE Alu 1 293 -17 2477 233 26 51 chr3 4912473 4912656 -213124502 + L1ME1 LINE L1 5957 6111 -55 1774 146 153 42 chr3 4912656 4912729 -213124429 - MSTA LTR MaLR 0 428 365 2413 52 0 29 chr3 4912729 4913035 -213124123 + AluY SINE Alu 1 297 -14 1774 146 153 42 chr3 4913035 4913346 -213123812 - MSTA LTR MaLR -63 365 1 2477 233 26 51 chr3 4913346 4913395 -213123763 + L1ME1 LINE L1 6111 6160 -6 1754 139 58 41 chr3 4913861 4914156 -213123002 + AluSx SINE Alu 1 300 -12 180 77 0 0 chr3 4914495 4914521 -213122637 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 561 278 131 0 chr3 4914596 4914772 -213122386 - MIR SINE MIR -32 230 32 609 178 8 0 chr3 4915112 4915230 -213121928 - MLT1D LTR MaLR 0 505 387 2271 104 0 0 chr3 4915439 4915737 -213121421 - AluSx SINE Alu -3 309 12 1527 195 3 36 chr3 4915960 4916268 -213120890 + AluJo SINE Alu 1 298 -14 870 168 0 0 chr3 4916312 4916437 -213120721 + AluJb SINE Alu 1 125 -187 1835 158 18 0 chr3 4917298 4917582 -213119576 + AluJo SINE Alu 1 289 -23 480 62 37 0 chr3 4917592 4917673 -213119485 + (TA)n Simple_repeat Simple_repeat 1 84 0 216 144 22 0 chr3 4917945 4917991 -213119167 + MIR SINE MIR 99 146 -62 2005 114 0 24 chr3 4918106 4918415 -213118743 + AluSx SINE Alu 3 304 0 4457 183 19 25 chr3 4918702 4919582 -213117576 - L1MB8 LINE L1 0 6178 5304 833 199 6 0 chr3 4919585 4919741 -213117417 - FRAM SINE Alu 0 40 1 641 133 23 8 chr3 4919743 4919871 -213117287 - L1MB8 LINE L1 -830 5316 5187 610 264 7 14 chr3 4919871 4920040 -213117118 - AluY SINE Alu 0 301 134 1788 192 69 38 chr3 4920743 4921151 -213116007 + L1ME1 LINE L1 4902 5341 -825 2198 124 7 0 chr3 4921151 4921458 -213115700 + AluSx SINE Alu 1 309 -3 1788 192 69 38 chr3 4921458 4921635 -213115523 + L1ME1 LINE L1 5341 5511 -655 512 169 24 0 chr3 4921639 4921722 -213115436 + MLT1D LTR MaLR 4 88 -417 1115 154 58 92 chr3 4921765 4922099 -213115059 - AluJb SINE Alu 0 324 1 1308 239 84 16 chr3 4922111 4922479 -213114679 + MLT1D LTR MaLR 113 505 0 603 228 8 0 chr3 4922489 4922616 -213114542 + L1ME1 LINE L1 5518 5645 -521 1939 172 42 15 chr3 4922660 4923062 -213114096 + L1ME1 LINE L1 5747 6159 -7 477 40 40 0 chr3 4923070 4923146 -213114012 + (TAGA)n Simple_repeat Simple_repeat 3 81 0 1893 147 0 13 chr3 4923304 4923604 -213113554 + AluSx SINE Alu 1 296 -16 187 235 0 0 chr3 4923604 4923638 -213113520 - MIR3 SINE MIR -24 184 151 2164 115 81 32 chr3 4923698 4924045 -213113113 + THE1B LTR MaLR 1 364 0 5243 67 1 3 chr3 4924045 4924703 -213112455 + THE1B-int LTR MaLR 1 657 -923 1448 155 4 52 chr3 4924703 4924955 -213112203 + THE1B LTR MaLR 125 364 0 285 264 110 110 chr3 4924956 4925183 -213111975 - MIR SINE MIR -32 230 4 456 240 108 16 chr3 4925342 4925471 -213111687 - MIR3 SINE MIR -48 160 20 1299 201 0 76 chr3 4925672 4925880 -213111278 + AluJo SINE Alu 1 180 -132 2055 182 12 6 chr3 4925880 4926221 -213110937 + MER61A LTR ERV1 1 343 0 1299 201 0 76 chr3 4926221 4926315 -213110843 + AluJo SINE Alu 180 280 -32 30 0 0 0 chr3 4926315 4926345 -213110813 + AT_rich Low_complexity Low_complexity 1 30 0 382 296 23 109 chr3 4927057 4927314 -213109844 - MIR SINE MIR -9 253 19 244 291 0 25 chr3 4927485 4927564 -213109594 - MIR3 SINE MIR 0 208 132 250 229 148 0 chr3 4927567 4927628 -213109530 - L2 LINE L2 -2 3270 3201 375 269 53 33 chr3 4928475 4928639 -213108519 - LTR43 LTR ERV1 -207 472 154 412 272 72 56 chr3 4928840 4929035 -213108123 + MLT1K LTR MaLR 224 421 -167 871 316 78 22 chr3 4929245 4929844 -213107314 + L1ME4a LINE L1 5348 5980 -141 1585 259 14 11 chr3 4929954 4930313 -213106845 + MLT1A2 LTR MaLR 1 360 -14 333 183 42 0 chr3 4930739 4930810 -213106348 + MER116 DNA Mariner 1 74 -6 2075 128 6 10 chr3 4932547 4932891 -213104267 - AluSx SINE Alu 0 343 1 234 222 139 28 chr3 4933492 4933600 -213103558 - MER113 DNA MER1_type? -401 120 1 1185 254 81 47 chr3 4934282 4934727 -213102431 - MLT1D LTR MaLR 0 505 46 1649 183 62 45 chr3 4934729 4934910 -213102248 - MLT2D LTR ERVL -3 411 235 2775 195 22 68 chr3 4934910 4935552 -213101606 + LTR9 LTR ERV1 1 612 0 1649 183 62 45 chr3 4935552 4935662 -213101496 - MLT2D LTR ERVL -179 235 128 2393 60 0 13 chr3 4935662 4935961 -213101197 + AluY SINE Alu 1 295 -16 1649 183 62 45 chr3 4935961 4936072 -213101086 - MLT2D LTR ERVL -286 128 1 237 143 24 24 chr3 4936080 4936122 -213101036 - MLT1D LTR MaLR -463 42 1 786 216 32 42 chr3 4936139 4936329 -213100829 - MIR SINE MIR -38 224 37 238 329 0 37 chr3 4936582 4936664 -213100494 - L2 LINE L2 -2 3270 3192 214 308 55 62 chr3 4937205 4937278 -213099880 - MIR SINE MIR -46 216 144 2289 83 48 0 chr3 4937278 4937567 -213099591 - AluSc SINE Alu -6 303 1 214 308 55 62 chr3 4937567 4937639 -213099519 - MIR SINE MIR -118 144 72 4187 118 24 5 chr3 4938262 4938853 -213098305 - LTR43 LTR ERV1 0 602 1 302 291 122 17 chr3 4938924 4939096 -213098062 + MIR SINE MIR 73 262 0 1714 174 98 113 chr3 4939186 4939484 -213097674 - MLT1D LTR MaLR 0 505 217 3621 158 6 2 chr3 4939484 4940009 -213097149 - MER1A DNA MER1_type 0 527 1 1714 174 98 113 chr3 4940009 4940223 -213096935 - MLT1D LTR MaLR -288 217 1 277 209 132 62 chr3 4940491 4940620 -213096538 - MLT1J2 LTR MaLR -310 140 3 2338 148 133 2 chr3 4942027 4942427 -213094731 - LTR47A LTR ERVL 0 452 1 4812 139 44 65 chr3 4942439 4943920 -213093238 - MER83B-int LTR ERV1 -258 5840 4411 394 36 18 18 chr3 4943921 4943976 -213093182 - MLT2A1 LTR ERVL 0 453 399 261 0 0 0 chr3 4943980 4944009 -213093149 + (TG)n Simple_repeat Simple_repeat 2 30 0 1819 116 41 7 chr3 4944029 4944323 -213092835 - MLT2A1 LTR ERVL -140 304 1 4759 221 82 41 chr3 4944323 4945322 -213091836 - MER83B-int LTR ERV1 -2026 2165 1209 216 0 0 0 chr3 4945322 4945346 -213091812 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 891 129 0 30 chr3 4945348 4945480 -213091678 - FLAM_C SINE Alu -5 128 1 4759 221 82 41 chr3 4945480 4945701 -213091457 - MER83B-int LTR ERV1 -2982 1209 891 1570 181 4 0 chr3 4945704 4945985 -213091173 - MER41B LTR ERV1 -353 282 1 699 171 43 41 chr3 4946002 4946196 -213090962 - MER83B-int LTR ERV1 -2590 2290 2009 307 293 75 34 chr3 4946338 4946485 -213090673 - LTR47A-int LTR ERVL -5176 167 15 1590 142 47 4 chr3 4946499 4946517 -213090641 - LTR47A LTR ERVL 0 452 436 1953 169 156 5 chr3 4946517 4946889 -213090269 + MSTA LTR MaLR 1 428 0 1590 142 47 4 chr3 4946889 4947255 -213089903 - LTR47A LTR ERVL -16 436 1 577 277 141 5 chr3 4947271 4947477 -213089681 + MIR SINE MIR 23 256 -6 28 0 0 0 chr3 4947993 4948021 -213089137 + AT_rich Low_complexity Low_complexity 1 28 0 1988 145 0 16 chr3 4948021 4948324 -213088834 + AluSx SINE Alu 1 298 -14 220 286 48 24 chr3 4948346 4948430 -213088728 - MIR SINE MIR -22 240 155 1335 215 87 36 chr3 4948661 4948747 -213088411 - MER113 DNA MER1_type? -1 520 440 4294 139 67 10 chr3 4948747 4949435 -213087723 - LTR8A LTR ERV1 0 727 1 1335 215 87 36 chr3 4949435 4949841 -213087317 - MER113 DNA MER1_type? -81 440 3 798 188 17 104 chr3 4949962 4950202 -213086956 + MER20 DNA MER1_type 1 219 0 27 49 0 0 chr3 4950620 4950661 -213086497 + AT_rich Low_complexity Low_complexity 1 41 0 1291 243 14 3 chr3 4950661 4950945 -213086213 + AluJb SINE Alu 1 287 -15 243 0 0 0 chr3 4950994 4951021 -213086137 + (CA)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr3 4952342 4952363 -213084795 + AT_rich Low_complexity Low_complexity 1 21 0 690 297 72 43 chr3 4952847 4953287 -213083871 + Charlie8 DNA MER1_type 1 440 -1977 422 16 0 109 chr3 4953380 4953444 -213083714 - MLT2B1 LTR ERVL 0 520 464 213 175 0 0 chr3 4953447 4953487 -213083671 + (CATA)n Simple_repeat Simple_repeat 4 43 0 276 170 0 130 chr3 4953487 4953587 -213083571 - L1MC4 LINE L1 -1339 6703 6617 273 196 21 93 chr3 4953501 4953598 -213083560 + L1MC4 LINE L1 6614 6703 -1339 * 2249 185 41 30 chr3 4953637 4954101 -213083057 - MLT2B1 LTR ERVL -51 469 1 407 300 110 11 chr3 4955464 4955665 -213081493 + MIR SINE MIR 19 237 -25 747 290 136 18 chr3 4956983 4957424 -213079734 - L2 LINE L2 0 3313 2821 2055 109 35 109 chr3 4957433 4957838 -213079320 + THE1C LTR MaLR 1 375 0 349 289 47 57 chr3 4957838 4958049 -213079109 + MLT1I LTR MaLR 175 383 -26 439 239 92 23 chr3 4958388 4958518 -213078640 - MLT1J2 LTR MaLR -275 175 37 193 276 0 52 chr3 4958689 4958747 -213078411 + MIR3 SINE MIR 8 62 -146 4922 172 27 34 chr3 4958857 4960243 -213076915 + L1MB3 LINE L1 4810 6181 -2 2351 132 33 33 chr3 4961767 4961836 -213075322 - THE1B LTR MaLR 0 364 296 1994 125 3 14 chr3 4961836 4962133 -213075025 + AluSx SINE Alu 1 294 -18 2351 132 33 33 chr3 4962133 4962427 -213074731 - THE1B LTR MaLR -67 297 1 254 336 70 31 chr3 4963199 4963327 -213073831 + L2 LINE L2 3132 3264 -8 1928 147 3 13 chr3 4963562 4963875 -213073283 - AluJb SINE Alu -2 310 1 1721 170 10 10 chr3 4964809 4965109 -213072049 + AluJo SINE Alu 1 300 -12 1274 177 42 103 chr3 4965124 4965435 -213071723 + AluJo SINE Alu 1 292 -20 189 288 225 0 chr3 4965507 4965587 -213071571 - L3 LINE CR1 -292 1285 1188 2433 121 22 25 chr3 4965679 4966044 -213071114 + THE1B LTR MaLR 1 364 0 624 317 176 32 chr3 4966047 4966388 -213070770 - L3 LINE CR1 -437 1140 751 345 232 72 65 chr3 4967494 4967632 -213069526 + MER103 DNA DNA 10 148 -18 272 375 13 33 chr3 4967688 4967840 -213069318 - MIR3 SINE MIR -39 169 21 542 239 43 111 chr3 4968143 4968234 -213068924 - Charlie8 DNA MER1_type -122 219 123 2145 109 0 50 chr3 4968234 4968555 -213068603 + AluSx SINE Alu 5 309 -3 542 239 43 111 chr3 4968555 4968697 -213068461 - Charlie8 DNA MER1_type -218 123 2 5415 129 16 5 chr3 4968967 4969783 -213067375 - L1MC1 LINE L1 0 6333 5509 442 306 25 13 chr3 4970837 4970994 -213066164 + MIR SINE MIR 104 262 0 337 258 13 0 chr3 4971175 4971262 -213065896 + MIR SINE MIR 40 126 -92 311 301 68 20 chr3 4971263 4971409 -213065749 + MIR SINE MIR 49 201 -61 993 215 45 0 chr3 4971655 4971855 -213065303 + MER3 DNA MER1_type 1 209 0 2255 99 3 10 chr3 4972376 4972690 -213064468 + AluSx SINE Alu 1 312 0 580 294 99 14 chr3 4972865 4973086 -213064072 + MIR SINE MIR 18 257 -5 261 119 48 0 chr3 4973915 4973957 -213063201 + MLT1D LTR MaLR 308 351 -154 * 1154 164 116 58 chr3 4973933 4974244 -213062914 - MLT1D LTR MaLR -165 340 12 817 258 33 16 chr3 4974329 4974511 -213062647 + MER5A DNA MER1_type 1 185 -4 3242 138 14 68 chr3 4974812 4975168 -213061990 - LTR26B LTR ERV1 0 531 214 1604 174 19 47 chr3 4975168 4975485 -213061673 - AluJb SINE Alu -4 308 1 3242 138 14 68 chr3 4975485 4975686 -213061472 - LTR26B LTR ERV1 -317 214 4 395 259 114 32 chr3 4975852 4976010 -213061148 - MIR3 SINE MIR 0 208 38 959 138 0 7 chr3 4976405 4976550 -213060608 - AluSg/x SINE Alu -30 279 136 438 333 0 0 chr3 4977669 4977780 -213059378 + L2 LINE L2 3157 3267 -5 23 0 0 0 chr3 4977788 4977811 -213059347 + AT_rich Low_complexity Low_complexity 1 23 0 2734 103 8 5 chr3 4977870 4978257 -213058901 + L1PB1 LINE L1 5763 6150 -1 298 347 200 7 chr3 4979154 4979304 -213057854 - MER5A DNA MER1_type -10 179 1 216 210 65 32 chr3 4979324 4979386 -213057772 + L2 LINE L2 3167 3230 -42 216 171 0 0 chr3 4979414 4979449 -213057709 + (TGGA)n Simple_repeat Simple_repeat 3 37 0 360 364 23 6 chr3 4979824 4980000 -213057158 + MIR3 SINE MIR 17 195 -13 1889 197 16 101 chr3 4980092 4980639 -213056519 + MLT1D LTR MaLR 3 503 -2 220 324 14 0 chr3 4980819 4980893 -213056265 + (TA)n Simple_repeat Simple_repeat 2 76 0 186 283 170 28 chr3 4981138 4981244 -213055914 - MIR3 SINE MIR -4 204 84 327 274 183 7 chr3 4981620 4981773 -213055385 - MIR3 SINE MIR -14 194 15 227 291 0 0 chr3 4982680 4982735 -213054423 - MIR3 SINE MIR 0 208 154 433 256 53 0 chr3 4982737 4982870 -213054288 + MER117 DNA MER1_type 2 141 -56 198 208 260 39 chr3 4982926 4983003 -213054155 - MIR3 SINE MIR -52 156 63 206 373 15 0 chr3 4983372 4983439 -213053719 - L2 LINE L2 -7 3265 3198 2205 129 3 0 chr3 4983606 4983916 -213053242 + AluSq SINE Alu 1 311 -2 1215 260 59 52 chr3 4984006 4984467 -213052691 - L1ME3A LINE L1 -1 6169 5706 457 78 16 0 chr3 4984489 4984553 -213052605 - MER41B LTR ERV1 -90 545 481 1108 287 89 2 chr3 4984553 4984947 -213052211 - L1ME3A LINE L1 -452 5718 5291 842 228 216 8 chr3 4985024 4985502 -213051656 - LTR50 LTR ERVL 0 795 124 1100 181 121 92 chr3 4985644 4986161 -213050997 - LTR36 LTR ERV1 0 611 1 643 187 66 30 chr3 4986179 4986366 -213050792 - MIR SINE MIR -21 241 47 1234 191 17 39 chr3 4987275 4987506 -213049652 - AluJo SINE Alu -86 226 1 887 211 80 0 chr3 4987506 4987681 -213049477 - MLT1D LTR MaLR -313 192 4 22 35 0 0 chr3 4989261 4989290 -213047868 + AT_rich Low_complexity Low_complexity 1 29 0 278 296 61 17 chr3 4989768 4989883 -213047275 + MIR SINE MIR 137 256 -6 31 76 0 0 chr3 4990235 4990301 -213046857 + AT_rich Low_complexity Low_complexity 1 66 0 459 63 0 0 chr3 4990551 4990614 -213046544 + (TG)n Simple_repeat Simple_repeat 2 64 0 366 267 0 11 chr3 4990614 4990704 -213046454 - LTR67 LTR ERVL -9 548 460 345 235 43 17 chr3 4990713 4990828 -213046330 - L1ME LINE L1 -374 5747 5630 294 290 30 53 chr3 4991360 4991491 -213045667 + L2 LINE L2 3182 3309 -4 201 237 0 0 chr3 4992219 4992278 -213044880 + (TA)n Simple_repeat Simple_repeat 2 60 0 742 249 73 96 chr3 4992323 4992725 -213044433 + MLT1I LTR MaLR 1 402 -7 209 296 59 89 chr3 4992734 4992869 -213044289 - MIR SINE MIR -61 147 17 468 0 0 0 chr3 4994050 4994102 -213043056 + (CA)n Simple_repeat Simple_repeat 2 53 0 449 301 65 37 chr3 4994116 4994362 -213042796 - Charlie8 DNA MER1_type -2160 257 5 337 195 26 26 chr3 4994887 4994964 -213042194 - MLT1L LTR MaLR -536 79 3 194 298 0 0 chr3 4994979 4995036 -213042122 - L2 LINE L2 -2 3311 3255 21 36 0 0 chr3 4995113 4995141 -213042017 + AT_rich Low_complexity Low_complexity 1 28 0 1106 267 70 26 chr3 4995174 4995739 -213041419 - L2 LINE L2 -159 3154 2570 1789 164 7 20 chr3 4995768 4996066 -213041092 + AluJb SINE Alu 1 294 -18 22 0 0 0 chr3 4996066 4996088 -213041070 + AT_rich Low_complexity Low_complexity 1 22 0 184 310 127 35 chr3 5097079 5097221 -212939937 + L2 LINE L2 3150 3304 -9 740 259 37 27 chr3 5097261 5097555 -212939603 - L1M4 LINE L1 -981 5165 4869 1243 194 3 54 chr3 5097665 5097980 -212939178 - AluY SINE Alu 0 311 13 4874 161 17 25 chr3 5098384 5099346 -212937812 + L1P3 LINE L1 10 1069 -5392 6117 94 6 0 chr3 5099346 5100204 -212936954 + L1PA7 LINE L1 5277 6139 -15 193 176 33 33 chr3 5100204 5100295 -212936863 + (TATATG)n Simple_repeat Simple_repeat 2 92 0 432 128 41 23 chr3 5100307 5100479 -212936679 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 714 122 47 6 chr3 5100498 5100670 -212936488 + (TA)n Simple_repeat Simple_repeat 2 180 0 26 0 0 0 chr3 5100670 5100696 -212936462 + AT_rich Low_complexity Low_complexity 1 26 0 556 142 7 7 chr3 5100698 5100839 -212936319 + (TA)n Simple_repeat Simple_repeat 2 142 0 318 336 0 25 chr3 5100853 5100972 -212936186 - L1MC4 LINE L1 -1339 6703 6588 438 130 28 0 chr3 5100972 5101080 -212936078 + (TA)n Simple_repeat Simple_repeat 1 111 0 10561 125 13 2 chr3 5101180 5102862 -212934296 + L1P3 LINE L1 1269 2968 -3178 7461 86 11 1 chr3 5102840 5104308 -212932850 + L1P3 LINE L1 4287 5764 -390 * 1721 136 0 0 chr3 5104408 5104651 -212932507 + AluSq SINE Alu 55 297 -16 389 307 67 11 chr3 5105405 5105584 -212931574 - MIR SINE MIR -11 251 63 316 286 133 41 chr3 5106075 5106169 -212930989 + MIR SINE MIR 34 118 -144 1550 222 25 73 chr3 5106169 5106700 -212930458 + MLT1D LTR MaLR 1 505 0 316 286 133 41 chr3 5106700 5106801 -212930357 + MIR SINE MIR 118 247 -15 24 53 0 0 chr3 5106826 5106864 -212930294 + AT_rich Low_complexity Low_complexity 1 38 0 2067 149 0 0 chr3 5108947 5109249 -212927909 - AluSq SINE Alu -11 302 1 23 54 0 0 chr3 5109389 5109426 -212927732 + AT_rich Low_complexity Low_complexity 1 37 0 2816 203 50 14 chr3 5109726 5109864 -212927294 - L1MB7 LINE L1 -7 6177 6045 183 42 0 0 chr3 5109864 5109888 -212927270 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 2816 203 50 14 chr3 5109888 5110415 -212926743 - L1MB7 LINE L1 -139 6045 5488 4875 212 44 20 chr3 5110419 5111899 -212925259 - L1MB7 LINE L1 -724 5450 3946 308 172 0 16 chr3 5111907 5111971 -212925187 + L1MD2 LINE L1 6275 6337 -22 26 0 0 0 chr3 5111978 5112004 -212925154 + AT_rich Low_complexity Low_complexity 1 26 0 400 269 90 19 chr3 5113207 5113363 -212923795 - MIR SINE MIR -76 186 20 22 0 0 30 chr3 5113466 5113482 -212923676 + AT_rich Low_complexity Low_complexity 1 16 -16 2267 58 3 48 chr3 5113482 5113795 -212923363 + AluY SINE Alu 13 311 0 22 0 0 30 chr3 5113795 5113811 -212923347 + AT_rich Low_complexity Low_complexity 16 32 0 4077 210 76 49 chr3 5115234 5116994 -212920164 - MER52A LTR ERV1 -12 1743 1 562 302 62 18 chr3 5117425 5117766 -212919392 - HAL1 LINE L1 -1489 1018 663 26 30 0 0 chr3 5118044 5118077 -212919081 + AT_rich Low_complexity Low_complexity 1 33 0 1701 174 0 0 chr3 5118232 5118533 -212918625 + AluJb SINE Alu 1 301 0 299 189 0 0 chr3 5120145 5120198 -212916960 - HsTC2 DNA Tc2 -5 1893 1841 824 199 70 25 chr3 5120202 5120403 -212916755 + LTR50 LTR ERVL 1 210 -585 1052 287 36 27 chr3 5120423 5120901 -212916257 - L1M4 LINE L1 -898 5248 4767 294 245 47 9 chr3 5120929 5121035 -212916123 + CT-rich Low_complexity Low_complexity 6 115 0 721 279 47 45 chr3 5121036 5121070 -212916088 - L1M4 LINE L1 -1445 4701 4669 1233 175 55 7 chr3 5121070 5121379 -212915779 + MER33 DNA MER1_type 1 324 0 721 279 47 45 chr3 5121379 5121924 -212915234 - L1M4 LINE L1 -1477 4669 4121 1473 285 22 15 chr3 5121929 5122463 -212914695 - L1M4 LINE L1 -2074 4072 3535 579 217 1 35 chr3 5122463 5122690 -212914468 + L1M2 LINE L1 2735 2952 -3896 915 194 23 23 chr3 5122927 5123102 -212914056 - AluJo SINE Alu -137 175 1 369 268 41 24 chr3 5123115 5123238 -212913920 - MIR SINE MIR -56 206 82 366 297 82 15 chr3 5123238 5123433 -212913725 + L1MC/D LINE L1 5022 5229 -917 528 304 94 24 chr3 5123515 5123896 -212913262 + L1MC/D LINE L1 5317 5724 -2084 14901 99 14 6 chr3 5123981 5126175 -212910983 - L1P LINE L1 -1437 4709 2500 11554 29 3 0 chr3 5126177 5128353 -212908805 - L1PA2 LINE L1 0 6155 4001 16457 37 1 1 chr3 5128353 5130389 -212906769 + L1PA2 LINE L1 1978 4012 -2134 887 83 0 8 chr3 5130383 5130516 -212906642 - L1P LINE L1 -3635 2511 2380 * 1901 181 52 11 chr3 5130498 5130962 -212906196 - L1P LINE L1 -4418 1728 1246 23 54 0 0 chr3 5131796 5131833 -212905325 + AT_rich Low_complexity Low_complexity 1 37 0 1137 163 0 100 chr3 5132238 5132489 -212904669 + MER21B LTR ERV1 1 226 -637 1405 188 65 53 chr3 5132497 5132525 -212904633 + MER21B LTR ERV1 503 529 -334 2520 205 43 76 chr3 5132525 5133245 -212903913 - MER72 LTR ERV1 0 722 26 2531 59 0 3 chr3 5133245 5133550 -212903608 - AluY SINE Alu -7 304 1 2520 205 43 76 chr3 5133550 5133576 -212903582 - MER72 LTR ERV1 -696 26 1 1405 188 65 53 chr3 5133576 5133903 -212903255 + MER21B LTR ERV1 529 862 -1 2150 106 3 3 chr3 5134133 5134417 -212902741 - AluSq SINE Alu -27 286 3 386 234 79 106 chr3 5134489 5134792 -212902366 - L1ME4a LINE L1 -63 6058 5764 604 216 35 0 chr3 5134858 5134974 -212902184 + MER101B LTR ERV1 1 120 -450 275 59 0 0 chr3 5135008 5135042 -212902116 + MER21B LTR ERV1 672 705 -158 1994 134 0 26 chr3 5135763 5136069 -212901089 + AluSq SINE Alu 1 298 -15 3491 130 14 40 chr3 5136165 5136790 -212900368 - MER4B LTR ERV1 0 610 2 23 33 0 0 chr3 5136829 5136859 -212900299 + AT_rich Low_complexity Low_complexity 1 30 0 2446 65 3 7 chr3 5136999 5137308 -212899850 - AluY SINE Alu -3 308 1 1478 290 92 56 chr3 5137358 5138342 -212898816 + LTR28 LTR ERV1 1 1020 0 259 310 0 109 chr3 5138806 5138980 -212898178 - MIR SINE MIR -71 191 37 366 271 9 0 chr3 5139280 5139387 -212897771 + MER34 LTR ERV1 1 108 -434 396 108 95 14 chr3 5139403 5139477 -212897681 + LTR29 LTR ERV1 151 230 -392 1171 141 20 0 chr3 5139482 5139681 -212897477 + LTR29 LTR ERV1 190 392 -230 1211 145 86 23 chr3 5139681 5139902 -212897256 + AluJo SINE Alu 64 298 -14 974 225 36 0 chr3 5139919 5140141 -212897017 + LTR49 LTR ERV1 366 595 0 470 181 0 43 chr3 5140293 5140481 -212896677 + (TA)n Simple_repeat Simple_repeat 1 180 0 8568 208 28 19 chr3 5140612 5140630 -212896528 + L1 LINE L1 2269 2285 -3861 4212 120 5 13 chr3 5140630 5141247 -212895911 - LTR9 LTR ERV1 0 612 1 8568 208 28 19 chr3 5141247 5143323 -212893835 + L1 LINE L1 2285 4383 -1763 247 286 71 11 chr3 5143331 5143614 -212893544 - L1M4 LINE L1 -2741 3405 3106 * 577 321 33 23 chr3 5143607 5144000 -212893158 - L1MCc LINE L1 -4887 1536 1140 216 326 119 26 chr3 5145162 5145355 -212891803 - MIR SINE MIR 0 262 52 1685 137 5 2 chr3 5145363 5145630 -212891528 + L1PA15 LINE L1 5654 5929 -237 1605 118 4 4 chr3 5145680 5145917 -212891241 + L1PA15 LINE L1 5926 6162 -3 42247 53 4 1 chr3 5146384 5152501 -212884657 - L1PA4 LINE L1 0 6155 19 1970 154 81 8 chr3 5152925 5153294 -212883864 + MSTD LTR MaLR 1 396 0 1503 176 36 39 chr3 5153862 5154169 -212882989 - AluJo SINE Alu 0 312 7 22 56 0 0 chr3 5154318 5154354 -212882804 + AT_rich Low_complexity Low_complexity 1 36 0 1107 30 0 0 chr3 5154420 5154554 -212882604 + L1PA4 LINE L1 6018 6151 -4 539 151 41 41 chr3 5154605 5154751 -212882407 - Charlie5 DNA MER1_type -11 2601 2456 180 0 0 0 chr3 5156488 5156508 -212880650 + (TG)n Simple_repeat Simple_repeat 2 21 0 3727 245 51 58 chr3 5156814 5157542 -212879616 + L1ME1 LINE L1 3658 4390 -1776 1245 186 113 15 chr3 5157542 5157839 -212879319 - AluJb SINE Alu 0 312 1 3727 245 51 58 chr3 5157839 5159402 -212877756 + L1ME1 LINE L1 4390 5920 -246 23150 32 7 0 chr3 5159699 5162910 -212874248 + L1P1 LINE L1 2544 5772 -383 207 0 0 0 chr3 5163472 5163495 -212873663 + (CA)n Simple_repeat Simple_repeat 1 23 0 220 304 0 18 chr3 5163540 5163596 -212873562 + L2 LINE L2 3121 3175 -97 562 286 65 35 chr3 5164040 5164239 -212872919 + MIR SINE MIR 58 262 0 332 349 48 26 chr3 5165619 5165848 -212871310 - L2 LINE L2 -3 3310 3077 387 60 0 0 chr3 5166272 5166322 -212870836 + (TTCCC)n Simple_repeat Simple_repeat 1 50 0 27 0 0 0 chr3 5166442 5166469 -212870689 + AT_rich Low_complexity Low_complexity 1 27 0 947 286 34 67 chr3 5166483 5166664 -212870494 + HAL1b LINE L1 364 549 -799 1928 128 6 39 chr3 5166664 5166976 -212870182 + AluSx SINE Alu 1 302 -10 947 286 34 67 chr3 5166976 5167347 -212869811 + HAL1b LINE L1 549 898 -450 276 204 41 10 chr3 5167724 5167822 -212869336 + (TA)n Simple_repeat Simple_repeat 1 101 0 881 228 0 0 chr3 5167857 5168015 -212869143 + AluJb SINE Alu 137 294 -18 1271 165 36 14 chr3 5168030 5168363 -212868795 + MER88 LTR ERVL 43 464 0 515 344 29 16 chr3 5168461 5168705 -212868453 + MIR SINE MIR 6 252 -10 2204 100 7 0 chr3 5169281 5169581 -212867577 - AluY SINE Alu -9 302 1 280 313 12 18 chr3 5169680 5169846 -212867312 + (CATATA)n Simple_repeat Simple_repeat 3 167 0 525 296 109 41 chr3 5170045 5171340 -212865818 - L1M4 LINE L1 -1091 5055 3662 312 316 22 7 chr3 5171701 5171840 -212865318 - L1M4 LINE L1 -2838 3308 3168 2413 118 22 3 chr3 5172536 5172893 -212864265 - THE1B LTR MaLR 0 364 1 2740 156 2 26 chr3 5174400 5174868 -212862290 - MER41B LTR ERV1 0 635 179 1380 127 9 27 chr3 5174903 5174992 -212862166 - AluSq SINE Alu -96 217 128 189 0 0 0 chr3 5174992 5175013 -212862145 + (TA)n Simple_repeat Simple_repeat 1 21 0 1380 127 9 27 chr3 5175013 5175144 -212862014 - AluSq SINE Alu -185 128 1 1272 132 5 0 chr3 5175144 5175334 -212861824 - MER41B LTR ERV1 -444 191 1 363 274 212 0 chr3 5175915 5176061 -212861097 + MER5B DNA MER1_type 2 178 0 535 314 110 4 chr3 5176961 5177197 -212859961 - MIR SINE MIR 0 262 2 265 321 161 12 chr3 5177628 5177790 -212859368 - L2 LINE L2 -195 3077 2892 463 237 23 45 chr3 5177840 5178017 -212859141 + Charlie7 DNA MER1_type 2440 2612 0 204 273 131 10 chr3 5178903 5179002 -212858156 - MIR SINE MIR -5 257 147 2943 160 29 60 chr3 5179006 5179638 -212857520 - LTR9 LTR ERV1 0 612 1 231 320 29 10 chr3 5179684 5179787 -212857371 - MIR SINE MIR -155 107 3 287 265 24 0 chr3 5179844 5179927 -212857231 + (TTCA)n Simple_repeat Simple_repeat 1 85 0 26 0 0 0 chr3 5180522 5180548 -212856610 + AT_rich Low_complexity Low_complexity 1 26 0 272 403 93 5 chr3 5180982 5181198 -212855960 + L2 LINE L2 2551 2785 -529 395 333 62 25 chr3 5181245 5181488 -212855670 + L2 LINE L2 2888 3139 -174 918 277 93 34 chr3 5181546 5181867 -212855291 - LTR16C LTR ERVL -3 488 149 210 280 194 32 chr3 5181955 5182048 -212855110 + L2 LINE L2 3141 3248 -24 1715 179 122 24 chr3 5182247 5182672 -212854486 - MLT1C LTR MaLR 0 467 1 353 243 99 40 chr3 5184655 5184807 -212852351 - LTR37B LTR ERV1 -72 396 236 241 382 38 0 chr3 5186313 5186444 -212850714 - L3b LINE CR1 -121 1462 1327 280 98 49 0 chr3 5186881 5186942 -212850216 + GA-rich Low_complexity Low_complexity 1 64 0 2308 58 0 3 chr3 5187293 5187601 -212849557 - AluY SINE Alu -4 307 1 187 349 0 24 chr3 5188166 5188249 -212848909 + L2 LINE L2 813 893 -2421 348 165 0 28 chr3 5188311 5188420 -212848738 + (TAA)n Simple_repeat Simple_repeat 1 106 0 342 0 0 0 chr3 5188682 5188720 -212848438 + (TA)n Simple_repeat Simple_repeat 1 38 0 * 396 0 0 0 chr3 5188719 5188763 -212848395 + (CA)n Simple_repeat Simple_repeat 2 45 0 202 93 23 23 chr3 5190064 5190107 -212847051 + (TA)n Simple_repeat Simple_repeat 1 43 0 22 0 0 0 chr3 5190300 5190322 -212846836 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 5191802 5191830 -212845328 + AT_rich Low_complexity Low_complexity 1 28 0 235 280 85 17 chr3 5192078 5192196 -212844962 - MER117 DNA MER1_type -65 132 7 727 179 0 0 chr3 5193140 5193257 -212843901 + FLAM_C SINE Alu 1 117 -16 263 28 28 0 chr3 5193262 5193298 -212843860 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 806 71 8 0 chr3 5193518 5193645 -212843513 + (TTCC)n Simple_repeat Simple_repeat 1 128 0 25 31 0 0 chr3 5193675 5193707 -212843451 + AT_rich Low_complexity Low_complexity 1 32 0 338 261 112 25 chr3 5193924 5194085 -212843073 + L2 LINE L2 1909 2083 -1231 435 299 8 0 chr3 5194100 5194227 -212842931 + L2 LINE L2 2231 2358 -956 237 392 64 8 chr3 5194224 5194349 -212842809 - L2 LINE L2 -366 2948 2817 * 1097 294 88 44 chr3 5194373 5194999 -212842159 + L2 LINE L2 2369 3042 -271 289 286 162 0 chr3 5196182 5196287 -212840871 - MIR3 SINE MIR -2 206 85 326 311 57 31 chr3 5198187 5198380 -212838778 + L3 LINE CR1 1214 1411 -166 235 246 66 0 chr3 5198841 5198902 -212838256 - MIR SINE MIR -149 113 49 180 0 0 0 chr3 5199739 5199759 -212837399 + (A)n Simple_repeat Simple_repeat 1 20 0 28 71 0 0 chr3 5199784 5199840 -212837318 + AT_rich Low_complexity Low_complexity 1 56 0 231 247 33 73 chr3 5200348 5200498 -212836660 + MIR SINE MIR 117 260 -2 198 128 0 0 chr3 5202056 5202095 -212835063 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1565 192 4 4 chr3 5203980 5204107 -212833051 + AluSx SINE Alu 1 127 -185 279 0 0 0 chr3 5204107 5204138 -212833020 + (CA)n Simple_repeat Simple_repeat 2 32 0 1565 192 4 4 chr3 5204138 5204286 -212832872 + AluSx SINE Alu 126 276 -36 333 0 0 0 chr3 5204288 5204325 -212832833 + (TC)n Simple_repeat Simple_repeat 2 38 0 * 587 94 10 0 chr3 5204324 5204420 -212832738 + (TA)n Simple_repeat Simple_repeat 1 97 0 482 358 6 6 chr3 5204493 5204672 -212832486 + L2 LINE L2 1405 1583 -1731 1735 290 128 43 chr3 5204787 5205810 -212831348 + L2 LINE L2 1867 2976 -338 2245 194 21 8 chr3 5205851 5206330 -212830828 - L1MC3 LINE L1 -1 7784 7300 393 293 98 6 chr3 5206336 5206510 -212830648 + L1M4c LINE L1 1704 1893 -4491 337 301 83 74 chr3 5206654 5206669 -212830489 + L1M4c LINE L1 2019 2032 -4531 1662 140 34 17 chr3 5206669 5206962 -212830196 + L1PA16 LINE L1 5866 6163 -3 337 301 83 74 chr3 5206962 5207258 -212829900 + L1M4c LINE L1 2032 2333 -4230 234 195 39 13 chr3 5207270 5207347 -212829811 + L1M4c LINE L1 2303 2381 -4001 3903 209 56 15 chr3 5207354 5208397 -212828761 - L1MC3 LINE L1 -746 5400 5161 * 4354 257 54 17 chr3 5208383 5210002 -212827156 + L1M4c LINE L1 2819 4497 -1885 805 228 56 39 chr3 5209996 5210407 -212826751 + L1M4c LINE L1 4900 5347 -1035 * 948 258 11 22 chr3 5210411 5210678 -212826480 - L1MCb LINE L1 -5781 264 1 4686 181 48 73 chr3 5210844 5212001 -212825157 + MER52A LTR ERV1 627 1755 0 5759 122 4 3 chr3 5213492 5214691 -212822467 + L1PA13 LINE L1 4967 6163 0 29 98 0 0 chr3 5216812 5216904 -212820254 + AT_rich Low_complexity Low_complexity 1 92 0 415 252 163 0 chr3 5217610 5217733 -212819425 + L2 LINE L2 3171 3313 0 24 0 0 0 chr3 5217857 5217881 -212819277 + AT_rich Low_complexity Low_complexity 1 24 0 201 363 70 19 chr3 5218316 5218473 -212818685 + MIR SINE MIR 39 203 -59 2873 227 45 18 chr3 5218682 5219651 -212817507 - L1M4 LINE L1 -2399 4245 3250 * 4271 238 59 41 chr3 5219638 5220256 -212816902 - L1M4 LINE L1 -3698 2946 2340 3371 162 24 7 chr3 5220256 5220848 -212816310 + LTR43 LTR ERV1 1 602 0 4271 238 59 41 chr3 5220848 5222758 -212814400 - L1M4 LINE L1 -4304 2340 307 2055 187 68 60 chr3 5222790 5224091 -212813067 - L1PA6 LINE L1 0 7592 6236 6208 83 108 19 chr3 5224096 5225160 -212811998 - MER11A LTR ERVK 0 1266 1 812 215 5 46 chr3 5225160 5225379 -212811779 - L1 LINE L1 -1348 4798 4589 5402 247 24 22 chr3 5225382 5227714 -212809444 - L1PA6 LINE L1 -3060 4524 2231 1890 91 0 4 chr3 5228102 5228356 -212808802 - AluY SINE Alu 0 311 59 273 304 49 33 chr3 5228725 5228909 -212808249 - L1PA6 LINE L1 -5267 2307 2121 * 862 316 53 53 chr3 5228880 5229431 -212807727 - L1PA6 LINE L1 -6166 1408 858 2195 91 0 7 chr3 5229477 5229790 -212807368 - AluSx SINE Alu 0 311 1 1007 234 57 4 chr3 5229859 5230107 -212807051 - L1M4 LINE L1 -6280 262 2 377 216 157 48 chr3 5230259 5230483 -212806675 - MLT1H1 LTR MaLR -286 309 22 224 266 76 0 chr3 5230503 5230582 -212806576 - MIR SINE MIR -61 201 117 222 37 0 0 chr3 5230626 5230653 -212806505 + (CTATT)n Simple_repeat Simple_repeat 5 31 0 389 359 12 12 chr3 5231179 5231346 -212805812 + MIR SINE MIR 8 174 -88 23 33 0 0 chr3 5231728 5231758 -212805400 + AT_rich Low_complexity Low_complexity 1 30 0 27 49 0 0 chr3 5231923 5231964 -212805194 + AT_rich Low_complexity Low_complexity 1 41 0 434 284 115 6 chr3 5233920 5234103 -212803055 - MIR SINE MIR -58 204 2 297 128 0 0 chr3 5234118 5234165 -212802993 + (TG)n Simple_repeat Simple_repeat 2 48 0 1243 282 104 32 chr3 5234385 5235002 -212802156 + MLT2F LTR ERVL 1 661 -2 21 0 0 0 chr3 5236308 5236329 -212800829 + AT_rich Low_complexity Low_complexity 1 21 0 310 229 72 12 chr3 5236375 5236458 -212800700 - L1MC4 LINE L1 -1339 6703 6616 236 369 92 14 chr3 5237588 5237729 -212799429 + MIR SINE MIR 41 192 -70 381 327 75 39 chr3 5237776 5238030 -212799128 - L2 LINE L2 -198 3074 2812 1404 167 38 38 chr3 5238248 5238511 -212798647 + MER7A DNA MER2_type 1 261 -85 1101 214 0 0 chr3 5238622 5238828 -212798330 - MER2 DNA MER2_type -139 206 1 467 250 0 0 chr3 5238828 5238915 -212798243 + MER7A DNA MER2_type 260 346 0 2007 293 58 23 chr3 5238931 5240052 -212797106 - L1MEc LINE L1 -4073 2323 1164 765 279 68 19 chr3 5240096 5240361 -212796797 - L1MEc LINE L1 -6082 314 37 1969 263 86 18 chr3 5240369 5241008 -212796150 + L1ME1 LINE L1 2237 2962 -3184 1431 187 50 25 chr3 5241008 5241291 -212795867 + AluJo SINE Alu 1 290 -22 1969 263 86 18 chr3 5241291 5241592 -212795566 + L1ME1 LINE L1 2962 3241 -2905 2759 240 54 40 chr3 5241614 5243373 -212793785 + L1ME1 LINE L1 4377 6159 -7 36 0 0 0 chr3 5243435 5243471 -212793687 + AT_rich Low_complexity Low_complexity 1 36 0 394 336 17 0 chr3 5243590 5243709 -212793449 - L2 LINE L2 0 3313 3193 1548 201 189 41 chr3 5243714 5244275 -212792883 - LTR48B LTR ERV1 0 644 1 391 381 11 16 chr3 5244365 5244554 -212792604 - L2 LINE L2 -251 3062 2875 285 294 0 24 chr3 5244924 5245050 -212792108 + GA-rich Low_complexity Low_complexity 4 126 0 206 232 0 0 chr3 5245509 5245565 -212791593 + T-rich Low_complexity Low_complexity 1 56 0 201 39 0 0 chr3 5245565 5245591 -212791567 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 7684 17 0 0 chr3 5245592 5247219 -212789939 - L1PA3 LINE L1 -14 6141 4514 266 322 138 0 chr3 5247689 5247841 -212789317 + MIR SINE MIR 87 259 -3 405 273 11 0 chr3 5250645 5250733 -212786425 + L2 LINE L2 3195 3283 -30 267 376 30 15 chr3 5250856 5250989 -212786169 + MIR3 SINE MIR 33 167 -41 2624 109 5 11 chr3 5251516 5251893 -212785265 - THE1C LTR MaLR 0 375 1 1580 159 77 69 chr3 5252584 5252961 -212784197 - MLT1B LTR MaLR 0 390 11 25 0 0 0 chr3 5253198 5253223 -212783935 + AT_rich Low_complexity Low_complexity 1 25 0 2025 99 46 3 chr3 5253601 5253885 -212783273 - AluSx SINE Alu -16 296 1 30 0 0 0 chr3 5255507 5255537 -212781621 + AT_rich Low_complexity Low_complexity 1 30 0 257 177 131 98 chr3 5255997 5256099 -212781059 + MIR3 SINE MIR 56 166 -42 239 338 0 13 chr3 5256350 5256427 -212780731 - MIR SINE MIR -112 150 75 259 347 0 0 chr3 5256513 5256588 -212780570 - L3 LINE CR1 -196 1381 1307 482 347 73 32 chr3 5257290 5257662 -212779496 + MLT1J2 LTR MaLR 50 436 -14 22 0 0 0 chr3 5258298 5258320 -212778838 + AT_rich Low_complexity Low_complexity 1 22 0 293 243 78 39 chr3 5258987 5259105 -212778053 + MIR SINE MIR 2 119 -90 237 335 48 48 chr3 5259192 5259359 -212777799 - L3 LINE CR1 -103 1474 1308 190 212 30 0 chr3 5259362 5259395 -212777763 + MER5A DNA MER1_type 2 35 -154 351 157 34 0 chr3 5259509 5259598 -212777560 + CT-rich Low_complexity Low_complexity 5 96 0 351 176 11 77 chr3 5259603 5259694 -212777464 - MLT1E3 LTR MaLR -391 233 149 777 193 183 63 chr3 5259706 5259991 -212777167 - MLT1A1 LTR MaLR -46 319 1 3488 204 8 8 chr3 5259995 5260619 -212776539 - MLT1A1-int LTR MaLR -4 1731 1108 496 192 10 29 chr3 5260637 5260741 -212776417 - MLT1E3 LTR MaLR -472 152 51 606 234 22 0 chr3 5260751 5260888 -212776270 - MLT2F LTR ERVL -523 140 1 477 221 32 0 chr3 5260888 5260983 -212776175 + MER5A DNA MER1_type 92 189 0 769 236 113 5 chr3 5261527 5261646 -212775512 + MER46A DNA MER2_type 1 106 -2625 1961 107 95 76 chr3 5261646 5262066 -212775092 - MSTA LTR MaLR 0 428 1 769 236 113 5 chr3 5262066 5262158 -212775000 + MER46A DNA MER2_type 106 235 -1 514 276 43 19 chr3 5262771 5262981 -212774177 - MER58C DNA MER1_type 0 215 1 342 115 0 186 chr3 5264385 5264422 -212772736 - MER5C DNA MER1_type 0 324 282 1215 269 59 45 chr3 5264422 5264934 -212772224 + LTR40a LTR ERVL 1 519 0 1784 171 13 3 chr3 5264936 5265235 -212771923 + AluJb SINE Alu 1 302 -10 342 115 0 186 chr3 5265235 5265307 -212771851 - MER5C DNA MER1_type -43 281 233 1540 270 57 43 chr3 5265310 5265891 -212771267 + MLT1E LTR MaLR 1 589 -4 194 375 100 17 chr3 5265927 5266047 -212771111 + L2 LINE L2 3143 3272 0 1746 122 7 0 chr3 5266284 5266563 -212770595 - MER6A DNA MER2_type 0 605 325 331 177 32 0 chr3 5266613 5266675 -212770483 + MSTB1 LTR MaLR 1 64 -368 * 1844 154 36 3 chr3 5266668 5266974 -212770184 - MER6A DNA MER2_type -289 316 1 200 333 86 0 chr3 5267165 5267258 -212769900 + MIR3 SINE MIR 77 177 -31 1874 187 107 3 chr3 5267409 5267800 -212769358 + MSTB1 LTR MaLR 1 432 0 39 50 0 0 chr3 5267954 5268014 -212769144 + AT_rich Low_complexity Low_complexity 1 60 0 359 240 39 0 chr3 5273517 5273621 -212763537 + MER105 DNA DNA 42 149 -55 4526 64 33 4 chr3 5274589 5275589 -212761569 - MER11A LTR ERVK 0 1266 1 706 312 44 30 chr3 5276021 5276319 -212760839 - LTR16A LTR ERVL -79 371 70 612 331 57 75 chr3 5277200 5278286 -212758872 - L2 LINE L2 -9 3304 2228 317 109 0 0 chr3 5278536 5278582 -212758576 - MADE1 DNA Mariner -34 46 1 207 325 74 43 chr3 5278910 5279073 -212758085 - MIR SINE MIR -89 173 6 23 33 0 0 chr3 5280808 5280838 -212756320 + AT_rich Low_complexity Low_complexity 1 30 0 385 260 188 26 chr3 5280839 5280993 -212756165 - MIR SINE MIR -51 211 33 456 322 44 6 chr3 5282296 5282476 -212754682 + MIR SINE MIR 20 206 -56 324 286 211 6 chr3 5283813 5283974 -212753184 - L2 LINE L2 -24 3289 3096 609 214 17 79 chr3 5284965 5285143 -212752015 + L1MA9 LINE L1 6122 6288 -3 922 67 0 0 chr3 5285143 5285263 -212751895 - L1PB3 LINE L1 -9 6145 6026 21 0 0 0 chr3 5285265 5285286 -212751872 + AT_rich Low_complexity Low_complexity 1 21 0 2211 87 17 0 chr3 5285302 5285589 -212751569 + AluSc SINE Alu 3 294 -15 2398 44 3 0 chr3 5285726 5286020 -212751138 + AluY SINE Alu 1 295 -16 1629 158 14 14 chr3 5286104 5286389 -212750769 + AluJo SINE Alu 1 285 -27 251 123 31 15 chr3 5286389 5286454 -212750704 + (TA)n Simple_repeat Simple_repeat 1 66 0 5502 36 3 1 chr3 5286732 5287394 -212749764 - L1PA5 LINE L1 -1 6153 5491 328 196 36 36 chr3 5287498 5287666 -212749492 + (TTGTG)n Simple_repeat Simple_repeat 5 172 0 2218 194 21 8 chr3 5287905 5288384 -212748774 - L1MC3 LINE L1 -1 7784 7300 382 264 62 92 chr3 5288390 5288685 -212748473 + L1M4c LINE L1 1704 2140 -4423 1624 143 34 20 chr3 5288724 5289018 -212748140 + L1PA16 LINE L1 5866 6163 -3 2068 236 50 37 chr3 5289273 5290175 -212746983 - L1M4c LINE L1 -2481 3901 2988 932 223 32 77 chr3 5290162 5290645 -212746513 - L1M4c LINE L1 -3698 2684 2223 * 21 36 0 0 chr3 5292048 5292076 -212745082 + AT_rich Low_complexity Low_complexity 1 28 0 221 200 10 30 chr3 5292702 5292802 -212744356 + A-rich Low_complexity Low_complexity 3 100 0 2214 74 0 0 chr3 5294301 5294618 -212742540 - AluY SINE Alu 0 317 1 2253 83 27 10 chr3 5294713 5295013 -212742145 + AluSx SINE Alu 1 305 -7 4127 150 21 3 chr3 5295471 5296144 -212741014 + MER6 DNA MER2_type 181 865 0 981 200 69 12 chr3 5296149 5296275 -212740883 - L1ME LINE L1 -349 5817 5700 2115 128 0 0 chr3 5296275 5296573 -212740585 - AluSq SINE Alu -15 298 1 981 200 69 12 chr3 5296573 5296691 -212740467 - L1ME LINE L1 -466 5700 5559 * 2064 147 0 3 chr3 5296675 5296989 -212740169 + L1P LINE L1 5 317 -5829 655 241 6 6 chr3 5298426 5298592 -212738566 - L1 LINE L1 -1222 4924 4759 1441 130 43 9 chr3 5298594 5298824 -212738334 - MSTA LTR MaLR 0 428 191 1978 121 7 7 chr3 5298824 5299122 -212738036 - AluSq SINE Alu -15 298 1 236 174 65 0 chr3 5299781 5299827 -212737331 + MER41D LTR ERV1 509 557 0 2380 118 25 3 chr3 5301101 5301457 -212735701 + THE1B LTR MaLR 1 364 0 266 322 138 0 chr3 5301990 5302142 -212735016 - MIR SINE MIR -3 259 87 3399 69 0 4 chr3 5302593 5303045 -212734113 + L1P LINE L1 4497 4946 -1200 535 152 11 22 chr3 5303147 5303239 -212733919 - MER77 LTR ERV1 -148 457 367 405 0 0 0 chr3 5303271 5303316 -212733842 + (TG)n Simple_repeat Simple_repeat 2 46 0 434 154 154 0 chr3 5303327 5303437 -212733721 - L1MC4a LINE L1 -1382 6426 6300 467 227 156 14 chr3 5303491 5303677 -212733481 - L1MC4a LINE L1 -1486 6322 6086 1883 145 16 3 chr3 5303678 5303982 -212733176 + AluJb SINE Alu 1 308 -4 338 206 0 0 chr3 5303985 5304053 -212733105 + L1MC4 LINE L1 6636 6703 -1339 655 225 85 84 chr3 5304236 5304627 -212732531 - MSTB2 LTR MaLR -13 444 1 219 336 82 55 chr3 5304640 5304750 -212732408 - MIR3 SINE MIR -93 115 3 6776 67 8 5 chr3 5304903 5306566 -212730592 - L1PA7 LINE L1 -16 6138 4475 23 54 0 0 chr3 5307875 5307912 -212729246 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr3 5308155 5308179 -212728979 + AT_rich Low_complexity Low_complexity 1 24 0 1944 134 3 3 chr3 5308184 5308510 -212728648 + AluSx SINE Alu 3 328 0 261 277 69 54 chr3 5308910 5309040 -212728118 + L2 LINE L2 3140 3271 -1 264 242 200 11 chr3 5309050 5309145 -212728013 - L2 LINE L2 -1 3312 3200 271 234 404 0 chr3 5309346 5309440 -212727718 - L2 LINE L2 0 3272 3141 1662 220 77 46 chr3 5309446 5309928 -212727230 - MLT1D LTR MaLR -6 499 3 1006 289 86 42 chr3 5311452 5311978 -212725180 + MLT1H LTR MaLR 1 549 0 21 36 0 0 chr3 5312028 5312056 -212725102 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr3 5312164 5312187 -212724971 + AT_rich Low_complexity Low_complexity 1 23 0 351 0 0 0 chr3 5312459 5312498 -212724660 + (CA)n Simple_repeat Simple_repeat 2 40 0 249 274 27 0 chr3 5312669 5312742 -212724416 + MIR SINE MIR 182 256 -6 1728 176 3 0 chr3 5313212 5313501 -212723657 + AluJo SINE Alu 1 290 -22 634 209 130 6 chr3 5313511 5313688 -212723470 + MER20 DNA MER1_type 1 199 -20 434 341 74 9 chr3 5314139 5314356 -212722802 - MIR SINE MIR -14 248 18 2286 113 0 6 chr3 5314855 5315166 -212721992 - AluSx SINE Alu -2 310 2 206 310 43 70 chr3 5315914 5316101 -212721057 + L2 LINE L2 2726 2907 -407 300 254 24 79 chr3 5316385 5316511 -212720647 + MIR SINE MIR 45 163 -99 560 284 126 48 chr3 5316621 5316892 -212720266 + LTR16C LTR ERVL 200 491 0 1976 134 16 3 chr3 5316912 5317219 -212719939 + AluSx SINE Alu 1 311 -1 521 237 44 7 chr3 5317345 5317480 -212719678 + MIR SINE MIR 12 151 -111 217 221 118 0 chr3 5317874 5317942 -212719216 - MIR SINE MIR -140 122 47 207 0 0 0 chr3 5317946 5317969 -212719189 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2975 83 0 2 chr3 5318055 5318452 -212718706 - L1PA8 LINE L1 0 6172 5777 291 294 0 73 chr3 5318753 5318862 -212718296 + MIR SINE MIR 45 145 -117 410 255 32 138 chr3 5319440 5319687 -212717471 + MER102a DNA MER1_type 92 312 -18 580 291 20 35 chr3 5319891 5320090 -212717068 - MIR SINE MIR -57 205 10 375 277 44 25 chr3 5320282 5320441 -212716717 + MER103 DNA DNA 5 166 0 198 307 92 43 chr3 5320491 5320652 -212716506 + MIR SINE MIR 2 169 -68 2114 105 3 3 chr3 5320855 5321141 -212716017 - AluSx SINE Alu -26 286 1 238 164 16 16 chr3 5321213 5321274 -212715884 + (TATATG)n Simple_repeat Simple_repeat 5 65 0 304 0 87 0 chr3 5322135 5322181 -212714977 + A-rich Low_complexity Low_complexity 2 51 0 184 379 11 0 chr3 5322683 5322770 -212714388 - MIR SINE MIR -155 107 20 685 326 25 8 chr3 5323261 5323497 -212713661 + MIR SINE MIR 22 261 -1 307 0 0 0 chr3 5324159 5324193 -212712965 + (TTTA)n Simple_repeat Simple_repeat 2 128 0 635 186 0 0 chr3 5324193 5324295 -212712863 - AluJo SINE Alu -1 317 183 644 209 0 0 chr3 5324294 5324409 -212712749 - AluJo SINE Alu -187 115 1 282 287 30 20 chr3 5326730 5326831 -212710327 + MLT1H LTR MaLR 1 102 -447 25 0 0 0 chr3 5326957 5326982 -212710176 + AT_rich Low_complexity Low_complexity 1 25 0 236 222 0 16 chr3 5327264 5327327 -212709831 + (TTTA)n Simple_repeat Simple_repeat 1 62 0 334 377 117 20 chr3 5327662 5328063 -212709095 - L2 LINE L2 -339 2975 2536 199 346 71 50 chr3 5328056 5328238 -212708920 + L2 LINE L2 2628 2813 -501 * 283 298 58 8 chr3 5328408 5328529 -212708629 - MER94 DNA DNA 0 134 8 292 380 29 37 chr3 5328576 5328821 -212708337 + MLT1K LTR MaLR 40 282 -306 1246 314 38 7 chr3 5328884 5329305 -212707853 + MER74C LTR ERVL 10 443 -17 2023 141 3 6 chr3 5329450 5329762 -212707396 - AluSq SINE Alu 0 313 3 489 325 5 26 chr3 5330020 5330214 -212706944 + MIR3 SINE MIR 19 208 0 288 249 44 88 chr3 5330820 5331025 -212706133 + MER46C DNA MER2_type 1 196 -142 249 209 0 95 chr3 5331060 5331165 -212705993 - L1MC4 LINE L1 -1339 6703 6609 1057 220 5 5 chr3 5331249 5331449 -212705709 + MER58A DNA MER1_type 1 200 -24 332 321 9 0 chr3 5333483 5333595 -212703563 - MIR3 SINE MIR -1 207 95 421 300 15 0 chr3 5333887 5334017 -212703141 - MER110 LTR ERV1 0 491 360 2566 149 9 41 chr3 5334031 5334474 -212702684 + MER57B LTR ERV1 1 429 -5 946 251 127 0 chr3 5334481 5334748 -212702410 - MER110 LTR ERV1 -145 346 46 504 267 72 59 chr3 5334802 5335023 -212702135 - MER58A DNA MER1_type 0 224 1 226 210 32 0 chr3 5335181 5335243 -212701915 + (TA)n Simple_repeat Simple_repeat 1 64 0 1304 280 9 69 chr3 5335574 5336099 -212701059 + L3 LINE CR1 795 1288 -289 414 321 81 43 chr3 5336664 5336873 -212700285 + MIR SINE MIR 46 262 0 735 288 113 14 chr3 5337983 5338501 -212698657 - MLT2E LTR ERVL -2 626 25 1597 169 4 22 chr3 5338766 5339044 -212698114 + AluJo SINE Alu 2 274 -38 300 27 0 0 chr3 5340636 5340676 -212696482 + (TG)n Simple_repeat Simple_repeat 1 77 0 300 27 0 0 chr3 5340676 5340713 -212696445 + (TG)n Simple_repeat Simple_repeat 2 38 0 621 207 201 73 chr3 5340930 5341205 -212695953 + MER63D DNA MER1_type 47 376 -685 212 0 0 35 chr3 5341205 5341234 -212695924 + (TA)n Simple_repeat Simple_repeat 1 28 0 621 207 201 73 chr3 5341234 5341301 -212695857 + MER63D DNA MER1_type 376 433 -628 1647 198 68 3 chr3 5341320 5341688 -212695470 + MER63D DNA MER1_type 666 1057 -4 22 35 0 0 chr3 5341792 5341821 -212695337 + AT_rich Low_complexity Low_complexity 1 29 0 194 258 91 45 chr3 5341842 5341908 -212695250 - MER5B DNA MER1_type -2 176 108 1073 242 81 36 chr3 5341913 5342114 -212695044 + L1ME3A LINE L1 5734 5924 -246 216 0 0 0 chr3 5342114 5342138 -212695020 + (TA)n Simple_repeat Simple_repeat 1 24 0 1073 242 81 36 chr3 5342138 5342354 -212694804 + L1ME3A LINE L1 5924 6170 0 2150 115 0 0 chr3 5342364 5342643 -212694515 + AluSg SINE Alu 1 279 -31 444 237 21 0 chr3 5342687 5342784 -212694374 + MER5B DNA MER1_type 77 175 -3 24 77 0 0 chr3 5342827 5342879 -212694279 + AT_rich Low_complexity Low_complexity 1 52 0 1234 160 20 116 chr3 5342918 5343212 -212693946 + Tigger7 DNA MER2_type 2 267 -2220 412 264 0 0 chr3 5343210 5343297 -212693861 + Tigger7 DNA MER2_type 2489 2575 -12 * 296 250 181 0 chr3 5343430 5343502 -212693656 + FLAM_A SINE Alu 33 117 -16 198 167 0 0 chr3 5343512 5343548 -212693610 + (TG)n Simple_repeat Simple_repeat 1 36 0 322 218 33 0 chr3 5343548 5343639 -212693519 + L1MCa LINE L1 1996 6983 -1339 281 188 0 0 chr3 5343669 5343733 -212693425 - L1MC4 LINE L1 -1339 6703 6640 813 217 0 30 chr3 5343739 5343905 -212693253 + FRAM SINE Alu 1 154 -22 6715 105 13 35 chr3 5343932 5344966 -212692192 + L1MA2 LINE L1 5137 6192 -112 1946 127 4 0 chr3 5344966 5345233 -212691925 + AluSx SINE Alu 1 268 -44 392 36 0 18 chr3 5345235 5345290 -212691868 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 6715 105 13 35 chr3 5345290 5345446 -212691712 + L1MA2 LINE L1 6193 6304 0 461 176 22 22 chr3 5345450 5345467 -212691691 + GA-rich Low_complexity Low_complexity 2 18 -119 1682 170 26 13 chr3 5345467 5345773 -212691385 + AluJo SINE Alu 1 310 -2 461 176 22 22 chr3 5345773 5345891 -212691267 + GA-rich Low_complexity Low_complexity 17 137 0 23 0 0 0 chr3 5346980 5347003 -212690155 + AT_rich Low_complexity Low_complexity 1 23 0 825 330 41 39 chr3 5347151 5347690 -212689468 - L2 LINE L2 -2 3311 2772 2350 96 3 0 chr3 5347740 5348052 -212689106 + AluSp SINE Alu 1 313 0 238 111 0 0 chr3 5348662 5348698 -212688460 - MER5C DNA MER1_type 0 324 289 1271 275 59 45 chr3 5348699 5349211 -212687947 + LTR40a LTR ERVL 1 519 0 1770 134 17 7 chr3 5349213 5349505 -212687653 + AluY SINE Alu 1 295 -16 1700 170 48 0 chr3 5349589 5349715 -212687443 + AluSg SINE Alu 1 120 -190 405 39 0 0 chr3 5349715 5349766 -212687392 + (CA)n Simple_repeat Simple_repeat 2 52 0 1700 170 48 0 chr3 5349766 5349933 -212687225 + AluSg SINE Alu 120 308 -2 533 278 53 74 chr3 5350193 5350477 -212686681 + L2 LINE L2 2925 3202 -111 401 214 81 106 chr3 5350777 5351212 -212685946 + L1MC5 LINE L1 7518 7941 -20 886 242 57 0 chr3 5351298 5351509 -212685649 - MSTD LTR MaLR -11 385 163 3046 259 42 31 chr3 5351511 5352446 -212684712 - MSTD-int LTR MaLR -789 946 2 1817 178 30 35 chr3 5352448 5352846 -212684312 - MSTD LTR MaLR 0 396 1 254 278 0 0 chr3 5352847 5352901 -212684257 + L2 LINE L2 3242 3295 -18 21 0 0 0 chr3 5355372 5355393 -212681765 + AT_rich Low_complexity Low_complexity 1 21 0 493 275 38 26 chr3 5357571 5357761 -212679397 + MIR3 SINE MIR 6 208 -54 225 0 0 0 chr3 5358547 5358572 -212678586 + (CA)n Simple_repeat Simple_repeat 2 26 0 2062 112 0 7 chr3 5360258 5360545 -212676613 - AluSp SINE Alu 0 313 29 324 0 0 0 chr3 5361408 5361444 -212675714 + (TG)n Simple_repeat Simple_repeat 2 37 0 346 226 11 117 chr3 5361484 5361638 -212675520 - LTR48 LTR ERV1 -30 747 521 1469 149 54 144 chr3 5361645 5362109 -212675049 - LTR49 LTR ERV1 -170 425 4 21 0 0 0 chr3 5362203 5362224 -212674934 + AT_rich Low_complexity Low_complexity 1 21 0 334 313 47 0 chr3 5363240 5363368 -212673790 - MIR3 SINE MIR -5 203 70 180 225 42 42 chr3 5363358 5363429 -212673729 + L2 LINE L2 630 700 -2614 * 500 354 111 24 chr3 5363821 5364468 -212672690 - L2 LINE L2 -11 3302 2516 1536 201 3 11 chr3 5365026 5365310 -212671848 + AluJo SINE Alu 1 282 -30 267 325 67 17 chr3 5367836 5367956 -212669202 - MIR SINE MIR -108 154 29 2045 247 59 22 chr3 5368059 5368784 -212668374 + L1MB7 LINE L1 5239 5989 -195 238 150 0 0 chr3 5368879 5368919 -212668239 + L1MB7 LINE L1 6132 6171 -13 996 237 10 5 chr3 5369075 5369282 -212667876 - MER58A DNA MER1_type 0 224 17 297 164 0 36 chr3 5369358 5369413 -212667745 - MIR SINE MIR -209 53 1 21 36 0 0 chr3 5370531 5370559 -212666599 + AT_rich Low_complexity Low_complexity 1 28 0 963 144 33 93 chr3 5372546 5372761 -212664397 + MER67D LTR ERV1 1 202 -312 423 0 0 0 chr3 5372764 5372811 -212664347 + (TG)n Simple_repeat Simple_repeat 2 48 0 2331 123 3 6 chr3 5372828 5373187 -212663971 - L1PB1 LINE L1 0 6151 5794 180 0 0 0 chr3 5373187 5373207 -212663951 + (TA)n Simple_repeat Simple_repeat 1 20 0 281 98 49 0 chr3 5373207 5373248 -212663910 + L1P5 LINE L1 5684 5726 -425 734 113 0 0 chr3 5373253 5373368 -212663790 + L1P5 LINE L1 5675 5789 -362 2770 176 3 4 chr3 5373379 5374246 -212662912 - L1PB1 LINE L1 -479 5672 4806 412 222 134 8 chr3 5374248 5374450 -212662708 + MER67D LTR ERV1 233 514 0 2015 197 15 5 chr3 5375559 5375949 -212661209 + MSTD LTR MaLR 3 396 0 267 31 0 0 chr3 5376070 5376102 -212661056 + (TC)n Simple_repeat Simple_repeat 2 33 0 209 194 0 16 chr3 5376859 5376921 -212660237 + GA-rich Low_complexity Low_complexity 2 62 0 22 35 0 0 chr3 5377012 5377041 -212660117 + AT_rich Low_complexity Low_complexity 1 29 0 2925 195 40 15 chr3 5377149 5377830 -212659328 - L1MC2 LINE L1 -11 6333 5636 393 290 96 28 chr3 5378665 5379061 -212658097 - L1ME4a LINE L1 -70 6051 5629 29 28 0 0 chr3 5381719 5381755 -212655403 + AT_rich Low_complexity Low_complexity 1 36 0 5345 133 18 10 chr3 5381975 5383232 -212653926 + L1PB3 LINE L1 4887 6154 0 314 147 44 0 chr3 5383239 5383307 -212653851 - MER58 DNA MER1_type -62 2358 2288 2288 236 75 38 chr3 5383433 5384118 -212653040 + MER21B LTR ERV1 100 809 -54 1670 238 106 14 chr3 5384215 5384727 -212652431 - MLT1F1 LTR MaLR 0 567 9 972 278 126 68 chr3 5385414 5386479 -212650679 + L1MC4a LINE L1 5671 6797 -1011 600 228 11 97 chr3 5386513 5386843 -212650315 + L1ME4a LINE L1 5165 5464 -702 332 328 16 0 chr3 5386947 5387075 -212650083 - L1MC4 LINE L1 -606 7436 7307 642 186 57 52 chr3 5387075 5387269 -212649889 + MER63 DNA MER1_type 865 1059 -1 321 221 72 171 chr3 5387279 5387520 -212649638 + L1M4 LINE L1 2464 2632 -3514 1917 125 3 14 chr3 5387520 5387816 -212649342 - AluSx SINE Alu -17 295 3 321 221 72 171 chr3 5387816 5388071 -212649087 + L1M4 LINE L1 2632 2911 -3235 289 324 101 21 chr3 5388384 5388860 -212648298 + L1M4 LINE L1 3221 3734 -2412 1826 149 17 3 chr3 5389285 5389586 -212647572 + AluJb SINE Alu 1 305 -7 372 210 0 0 chr3 5389586 5389667 -212647491 + (TA)n Simple_repeat Simple_repeat 1 81 0 626 251 79 100 chr3 5389826 5390217 -212646941 - MSTD LTR MaLR -13 383 1 247 321 83 46 chr3 5390230 5390339 -212646819 - MIR3 SINE MIR -93 115 3 482 46 15 0 chr3 5390458 5390523 -212646635 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 222 37 0 0 chr3 5390525 5390552 -212646606 + (TG)n Simple_repeat Simple_repeat 2 28 0 408 321 93 12 chr3 5390640 5390886 -212646272 + L1ME4a LINE L1 5599 5864 -257 330 143 0 14 chr3 5390925 5390995 -212646163 + L1MB7 LINE L1 6111 6179 -5 1632 161 14 14 chr3 5391331 5391616 -212645542 + AluJo SINE Alu 1 285 -27 233 113 28 28 chr3 5391616 5391681 -212645477 + (TA)n Simple_repeat Simple_repeat 1 65 0 41645 61 2 0 chr3 5391959 5398093 -212639065 - L1PA5 LINE L1 -1 6153 11 1819 168 0 19 chr3 5398843 5399158 -212638000 - AluJb SINE Alu -3 309 1 339 344 46 0 chr3 5399175 5399326 -212637832 + MIR SINE MIR 102 259 -3 2995 214 19 16 chr3 5400358 5400557 -212636601 - L1 LINE L1 -914 5232 5035 207 0 0 0 chr3 5400557 5400580 -212636578 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2995 214 19 16 chr3 5400580 5401123 -212636035 - L1 LINE L1 -1111 5035 4488 991 296 90 35 chr3 5402310 5402743 -212634415 + LTR16B LTR ERVL 8 464 0 291 28 0 0 chr3 5402759 5402795 -212634363 + (TG)n Simple_repeat Simple_repeat 2 37 0 500 186 0 16 chr3 5402808 5402937 -212634221 + (CATATA)n Simple_repeat Simple_repeat 4 130 0 205 300 10 40 chr3 5404315 5404415 -212632743 + L3b LINE CR1 1315 1411 -172 319 252 31 126 chr3 5404698 5404829 -212632329 + MER5B DNA MER1_type 19 134 -44 1829 122 8 0 chr3 5404829 5405083 -212632075 - AluSx SINE Alu -21 291 36 319 252 31 126 chr3 5405083 5405110 -212632048 + MER5B DNA MER1_type 134 162 -16 444 96 0 60 chr3 5405185 5405268 -212631890 + L1PA13 LINE L1 6075 6152 -11 21 0 0 0 chr3 5407362 5407383 -212629775 + AT_rich Low_complexity Low_complexity 1 21 0 2090 128 0 0 chr3 5407707 5408003 -212629155 - AluSx SINE Alu -15 297 2 183 283 0 19 chr3 5408013 5408066 -212629092 - L2 LINE L2 -4 3268 3217 1374 188 68 4 chr3 5408268 5408565 -212628593 + AluJo SINE Alu 2 315 0 941 292 131 43 chr3 5409015 5409164 -212627994 - HAL1 LINE L1 -909 1598 1463 1392 210 62 25 chr3 5409164 5409521 -212627637 - MLT1A2 LTR MaLR 0 374 5 941 292 131 43 chr3 5409521 5410252 -212626906 - HAL1 LINE L1 -1044 1463 641 2285 122 0 0 chr3 5410282 5410594 -212626564 + AluSx SINE Alu 1 312 0 657 287 0 53 chr3 5411578 5411825 -212625333 + MIR SINE MIR 15 248 -14 21 0 0 0 chr3 5411842 5411863 -212625295 + AT_rich Low_complexity Low_complexity 1 21 0 312 334 93 64 chr3 5413308 5413652 -212623506 - L2 LINE L2 0 3272 2919 819 208 26 26 chr3 5413741 5413933 -212623225 + MER3 DNA MER1_type 1 192 -17 380 378 11 6 chr3 5413991 5414171 -212622987 - L2 LINE L2 -535 2779 2599 12019 55 1 0 chr3 5414220 5416522 -212620636 + L1PA5 LINE L1 3848 6153 -1 540 260 80 35 chr3 5416849 5417049 -212620109 + MLT1K LTR MaLR 376 584 -4 26 0 0 0 chr3 5417547 5417573 -212619585 + AT_rich Low_complexity Low_complexity 1 26 0 279 193 9 23 chr3 5417649 5417768 -212619390 + MIR SINE MIR 86 261 -1 349 318 88 7 chr3 5418845 5418993 -212618165 + MIR SINE MIR 87 246 -16 39 22 0 0 chr3 5419050 5419096 -212618062 + AT_rich Low_complexity Low_complexity 1 46 0 1989 140 0 13 chr3 5419097 5419411 -212617747 - AluSx SINE Alu 0 312 3 214 137 39 39 chr3 5419510 5419561 -212617597 + A-rich Low_complexity Low_complexity 2 52 0 2508 112 99 7 chr3 5419802 5420261 -212616897 - LTR12 LTR ERV1 0 714 1 3284 135 19 17 chr3 5421132 5421658 -212615500 + MER1A DNA MER1_type 1 527 0 23 0 0 0 chr3 5423947 5423970 -212613188 + AT_rich Low_complexity Low_complexity 1 23 0 1110 180 23 59 chr3 5424053 5424338 -212612820 - AluJb SINE Alu 0 340 65 291 269 0 65 chr3 5425101 5425194 -212611964 - MER5B DNA MER1_type -91 87 1 436 270 43 9 chr3 5425346 5425461 -212611697 + MIR SINE MIR 1 119 -143 273 298 12 36 chr3 5425454 5425538 -212611620 - MIR SINE MIR -84 124 43 * 196 337 24 24 chr3 5425611 5425694 -212611464 + MIR3 SINE MIR 93 175 -33 632 294 131 0 chr3 5425708 5425929 -212611229 - MIR SINE MIR -10 252 3 24 0 0 0 chr3 5426874 5426898 -212610260 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr3 5426921 5426944 -212610214 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 5426969 5426990 -212610168 + AT_rich Low_complexity Low_complexity 1 21 0 1544 91 70 17 chr3 5426990 5427231 -212609927 - L1PA13 LINE L1 -1 6162 5909 432 0 0 0 chr3 5429339 5429387 -212607771 + (CA)n Simple_repeat Simple_repeat 2 49 0 294 303 148 68 chr3 5429820 5429982 -212607176 - MER5A DNA MER1_type -1 188 14 733 228 35 6 chr3 5431114 5431285 -212605873 + MER5B DNA MER1_type 3 178 0 546 276 83 11 chr3 5431335 5431516 -212605642 - MIR SINE MIR -33 229 36 750 261 18 0 chr3 5433128 5433293 -212603865 + MER45A DNA AcHobo 1 168 -10 311 296 85 63 chr3 5434066 5434465 -212602693 + L1 LINE L1 3111 3518 -2628 3707 192 40 34 chr3 5434539 5435397 -212601761 - MER21B LTR ERV1 0 863 1 199 250 108 42 chr3 5436795 5436915 -212600243 - L2 LINE L2 -229 3043 2916 193 381 12 0 chr3 5437168 5437252 -212599906 - L2 LINE L2 0 3272 3188 30 27 0 0 chr3 5438618 5438655 -212598503 + AT_rich Low_complexity Low_complexity 1 37 0 2330 268 73 46 chr3 5439004 5439475 -212597683 - L1ME3 LINE L1 0 6162 5705 1796 155 0 20 chr3 5439475 5439772 -212597386 - AluSx SINE Alu -21 291 1 2330 268 73 46 chr3 5439772 5441444 -212595714 - L1ME3 LINE L1 -457 5705 3943 1246 202 102 60 chr3 5441444 5441874 -212595284 - LTR47A LTR ERVL 0 452 5 2330 268 73 46 chr3 5441874 5442155 -212595003 - L1ME3 LINE L1 -2219 3943 3671 25 31 0 0 chr3 5442189 5442221 -212594937 + AT_rich Low_complexity Low_complexity 1 32 0 366 264 45 10 chr3 5442247 5442384 -212594774 - L1ME3 LINE L1 -2480 3666 3524 2287 29 11 4 chr3 5442714 5443072 -212594086 + AluY SINE Alu 1 360 0 249 338 0 0 chr3 5444079 5444156 -212593002 - MIR3 SINE MIR -7 201 125 209 269 90 67 chr3 5444275 5444409 -212592749 - MIR SINE MIR 0 262 126 299 333 38 50 chr3 5445072 5445231 -212591927 + MIR3 SINE MIR 27 183 -25 281 378 66 42 chr3 5446632 5446873 -212590285 - L3b LINE CR1 -20 1563 1317 257 314 6 70 chr3 5447374 5447427 -212589731 - MIR SINE MIR -109 153 98 3190 158 10 46 chr3 5447427 5447819 -212589339 + MER6A DNA MER2_type 2 364 -501 1704 166 3 28 chr3 5447819 5448109 -212589049 - AluJo SINE Alu -29 283 1 3190 158 10 46 chr3 5448109 5448343 -212588815 + MER6A DNA MER2_type 364 605 0 257 314 6 70 chr3 5448343 5448445 -212588713 - MIR SINE MIR -164 98 8 252 267 12 23 chr3 5448497 5448583 -212588575 + MIR SINE MIR 178 262 0 1751 181 7 13 chr3 5448618 5448917 -212588241 + AluJb SINE Alu 3 299 -13 183 42 0 0 chr3 5448917 5448941 -212588217 + (GA)n Simple_repeat Simple_repeat 2 25 0 180 278 188 21 chr3 5449572 5449716 -212587442 + MIR SINE MIR 49 216 -46 241 326 34 11 chr3 5449894 5449983 -212587175 + L2 LINE L2 2992 3082 -190 283 357 45 9 chr3 5450405 5450517 -212586641 + MIR SINE MIR 32 147 -115 323 305 103 33 chr3 5450738 5450951 -212586207 + MIR SINE MIR 4 231 -31 366 139 0 0 chr3 5451975 5452047 -212585111 + (CA)n Simple_repeat Simple_repeat 1 72 0 377 377 34 17 chr3 5452285 5452521 -212584637 - MIR SINE MIR 0 262 23 271 360 51 22 chr3 5453165 5453343 -212583815 + MIR SINE MIR 2 184 -78 899 301 57 57 chr3 5453601 5454150 -212583008 - MLT1H LTR MaLR 0 549 1 621 287 18 0 chr3 5454273 5454437 -212582721 - LTR33 LTR ERVL -354 167 1 429 274 48 43 chr3 5454447 5454633 -212582525 + MIR SINE MIR 6 192 -70 198 103 0 0 chr3 5454635 5454664 -212582494 + (TA)n Simple_repeat Simple_repeat 2 30 0 387 248 59 20 chr3 5455491 5455644 -212581514 + MER103 DNA DNA 6 164 -2 397 310 48 7 chr3 5456736 5456881 -212580277 - MIR SINE MIR -46 216 66 271 217 11 11 chr3 5457463 5457555 -212579603 + (TA)n Simple_repeat Simple_repeat 2 93 0 1127 221 69 1 chr3 5457692 5458011 -212579147 - MLT1D LTR MaLR 0 505 128 309 270 11 11 chr3 5458165 5458254 -212578904 + MER117 DNA MER1_type 2 90 -107 2647 112 3 3 chr3 5458308 5458683 -212578475 + THE1C LTR MaLR 1 375 0 30 69 0 0 chr3 5458913 5458971 -212578187 + AT_rich Low_complexity Low_complexity 1 58 0 346 308 147 53 chr3 5458995 5459430 -212577728 - L2 LINE L2 -12 3301 2826 2350 159 32 34 chr3 5461423 5461927 -212575231 - L1MA8 LINE L1 -4 6287 5785 180 260 6 172 chr3 5462130 5462299 -212574859 - MIR3 SINE MIR -65 143 3 * 513 315 211 28 chr3 5462299 5462964 -212574194 + L2 LINE L2 2304 3104 -168 320 296 68 31 chr3 5463445 5463607 -212573551 - MER102b DNA MER1_type 0 341 174 25 0 0 0 chr3 5464227 5464252 -212572906 + AT_rich Low_complexity Low_complexity 1 25 0 2248 56 3 0 chr3 5464300 5464616 -212572542 + L1PA8 LINE L1 5863 6179 0 22 21 0 62 chr3 5464705 5464753 -212572405 + AT_rich Low_complexity Low_complexity 1 45 0 331 331 18 18 chr3 5464862 5465025 -212572133 - L2 LINE L2 -4 3309 3147 840 131 0 0 chr3 5465165 5465287 -212571871 - FRAM SINE Alu -20 156 35 2211 121 3 6 chr3 5465459 5465772 -212571386 + AluSx SINE Alu 1 312 0 423 0 0 0 chr3 5465772 5465819 -212571339 + (TA)n Simple_repeat Simple_repeat 2 48 0 28 0 0 0 chr3 5466819 5466847 -212570311 + AT_rich Low_complexity Low_complexity 1 28 0 1725 111 4 12 chr3 5466885 5467129 -212570029 - AluSx SINE Alu -70 242 1 193 210 40 0 chr3 5467569 5467669 -212569489 + (TAAA)n Simple_repeat Simple_repeat 4 107 0 22 0 0 0 chr3 5467827 5467849 -212569309 + AT_rich Low_complexity Low_complexity 1 22 0 1495 219 148 37 chr3 5468477 5468905 -212568253 + MLT2B1 LTR ERVL 1 485 -35 300 27 0 0 chr3 5468905 5468942 -212568216 + (CA)n Simple_repeat Simple_repeat 1 37 0 1495 219 148 37 chr3 5468942 5468974 -212568184 + MLT2B1 LTR ERVL 485 512 -8 2379 132 3 19 chr3 5469079 5469449 -212567709 + THE1B LTR MaLR 1 364 0 450 323 30 6 chr3 5472608 5472772 -212564386 + MER117 DNA MER1_type 30 197 0 216 350 82 0 chr3 5475162 5475259 -212561899 - MIR3 SINE MIR -48 160 56 406 289 87 0 chr3 5475752 5475856 -212561302 + L2 LINE L2 3158 3270 -2 189 277 21 0 chr3 5478167 5478214 -212558944 + L2 LINE L2 2925 2972 -342 273 339 68 41 chr3 5478279 5478500 -212558658 + L2 LINE L2 3085 3311 -2 387 293 60 31 chr3 5478962 5479181 -212557977 - MIR SINE MIR -17 245 20 316 259 99 15 chr3 5479686 5479817 -212557341 + MIR SINE MIR 106 247 -15 1749 205 30 86 chr3 5479825 5480348 -212556810 + MLT1D LTR MaLR 1 618 -8 23 0 0 0 chr3 5481653 5481676 -212555482 + AT_rich Low_complexity Low_complexity 1 23 0 41926 34 25 2 chr3 5482014 5488025 -212549133 - L1PA2 LINE L1 0 6155 1 340 291 122 35 chr3 5489325 5489555 -212547603 - MIR SINE MIR -12 250 1 328 255 39 39 chr3 5490747 5490849 -212546309 + L1MC4 LINE L1 6602 6703 -1339 322 316 0 50 chr3 5490820 5490959 -212546199 - L1MC4 LINE L1 -1340 6702 6571 * 676 152 29 14 chr3 5491348 5491486 -212545672 - L1MB1 LINE L1 -6 6162 6023 2158 181 17 67 chr3 5491558 5492034 -212545124 + MER66A LTR ERV1 27 478 0 22 0 0 0 chr3 5493462 5493484 -212543674 + AT_rich Low_complexity Low_complexity 1 22 0 636 295 18 5 chr3 5494777 5494994 -212542164 + MER58A DNA MER1_type 2 221 -3 348 239 182 115 chr3 5495945 5495999 -212541159 - MER58A DNA MER1_type -2197 223 174 1131 124 31 26 chr3 5495999 5496193 -212540965 - L1PA16 LINE L1 -10 6156 5962 348 239 182 115 chr3 5496193 5496347 -212540811 - MER58A DNA MER1_type -2246 174 1 266 344 164 0 chr3 5496840 5496962 -212540196 + MIR SINE MIR 107 248 -14 217 273 0 0 chr3 5497020 5497075 -212540083 - L2 LINE L2 -5 3308 3254 269 306 189 0 chr3 5500518 5500629 -212536529 + MIR SINE MIR 20 151 -57 31 82 0 0 chr3 5501719 5501792 -212535366 + AT_rich Low_complexity Low_complexity 1 73 0 1964 142 10 0 chr3 5504705 5505008 -212532150 - AluSx SINE Alu -1 311 6 1187 46 0 0 chr3 5505148 5505299 -212531859 - L1PA4 LINE L1 -78 6077 5927 366 42 0 0 chr3 5505299 5505344 -212531814 + L1PA3 LINE L1 6105 6152 -3 261 238 138 0 chr3 5505362 5505442 -212531716 + L1MC5 LINE L1 7474 7564 -397 243 349 0 23 chr3 5506092 5506178 -212530980 - L2 LINE L2 -1 3312 3229 5014 208 89 67 chr3 5506636 5508182 -212528976 - MER45R DNA AcHobo -1 1580 1 1656 134 49 37 chr3 5508227 5508555 -212528603 + L1MA7 LINE L1 5956 6287 -4 315 303 91 51 chr3 5509409 5509584 -212527574 - MER5A DNA MER1_type -1 188 7 331 67 0 0 chr3 5509857 5509902 -212527256 - MADE1 DNA Mariner 0 80 36 29 0 0 0 chr3 5509903 5509932 -212527226 + AT_rich Low_complexity Low_complexity 1 29 0 696 236 42 23 chr3 5510245 5510508 -212526650 + L1MC5 LINE L1 7676 7943 -18 4418 186 14 44 chr3 5511500 5512480 -212524678 + L1MA9 LINE L1 5332 6282 -30 524 311 97 25 chr3 5512493 5513328 -212523830 - L1MEc LINE L1 -4716 1680 786 241 364 0 0 chr3 5514192 5514269 -212522889 - L2 LINE L2 -557 2757 2681 423 184 26 0 chr3 5514430 5514506 -212522652 - MER20 DNA MER1_type -133 86 9 951 279 114 30 chr3 5514515 5514953 -212522205 - L2 LINE L2 -690 2624 2150 180 210 37 0 chr3 5514984 5515065 -212522093 + (TA)n Simple_repeat Simple_repeat 1 84 0 969 313 93 8 chr3 5515122 5515604 -212521554 + HAL1 LINE L1 1259 1781 -726 260 240 80 0 chr3 5515612 5515687 -212521471 + HAL1 LINE L1 1950 2030 -477 1645 187 42 3 chr3 5516508 5516792 -212520366 - AluJo SINE Alu -17 295 1 22 0 0 0 chr3 5517399 5517421 -212519737 + AT_rich Low_complexity Low_complexity 1 22 0 469 248 132 45 chr3 5517441 5517707 -212519451 + L1ME2 LINE L1 5867 6155 -9 547 322 22 6 chr3 5517982 5518165 -212518993 + MIR SINE MIR 64 249 -13 474 248 33 62 chr3 5520887 5521097 -212516061 - L2 LINE L2 -1 3312 3109 25 75 0 0 chr3 5525520 5525573 -212511585 + AT_rich Low_complexity Low_complexity 1 53 0 454 311 41 15 chr3 5526657 5526853 -212510305 - MIR SINE MIR -11 251 51 204 179 0 0 chr3 5526963 5527002 -212510156 + (TATG)n Simple_repeat Simple_repeat 2 40 0 484 339 37 45 chr3 5527291 5527533 -212509625 + MIR SINE MIR 7 246 -16 1498 160 52 119 chr3 5528848 5529311 -212507847 - MSTB1 LTR MaLR 0 432 1 1986 142 3 0 chr3 5530164 5530460 -212506698 + AluSx SINE Alu 1 297 -15 182 296 0 0 chr3 5531525 5531569 -212505589 - MIR3 SINE MIR -157 51 8 386 299 92 51 chr3 5531681 5531898 -212505260 + MIR SINE MIR 19 244 -18 2466 157 25 11 chr3 5532228 5532667 -212504491 - Tigger2 DNA MER2_type -1 2717 2273 347 182 13 39 chr3 5532646 5532723 -212504435 - Tigger2 DNA MER2_type -2642 76 2 * 1949 120 0 0 chr3 5533152 5533427 -212503731 + AluSg SINE Alu 1 275 -35 225 0 0 0 chr3 5533430 5533455 -212503703 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 21 0 0 0 chr3 5534372 5534393 -212502765 + AT_rich Low_complexity Low_complexity 1 21 0 364 330 98 25 chr3 5535382 5535585 -212501573 + MIR SINE MIR 8 225 -37 32 0 0 0 chr3 5536630 5536662 -212500496 + AT_rich Low_complexity Low_complexity 1 32 0 186 311 66 66 chr3 5537127 5537278 -212499880 - MER5A DNA MER1_type -2 187 37 * 287 333 95 0 chr3 5537170 5537296 -212499862 + MER5A DNA MER1_type 52 189 0 182 287 194 19 chr3 5538526 5538634 -212498524 - MIR SINE MIR -65 143 17 196 329 68 0 chr3 5539280 5539353 -212497805 + MIR SINE MIR 184 261 -1 206 32 32 0 chr3 5539387 5539418 -212497740 + (TTTTA)n Simple_repeat Simple_repeat 1 32 0 1601 165 0 63 chr3 5539500 5539833 -212497325 - AluJo SINE Alu 0 312 1 304 322 50 3 chr3 5540404 5540516 -212496642 - MIR SINE MIR -73 135 31 351 238 95 0 chr3 5540569 5540653 -212496505 + L2 LINE L2 3180 3271 -1 22 70 0 0 chr3 5540725 5540768 -212496390 + AT_rich Low_complexity Low_complexity 1 43 0 362 299 28 19 chr3 5540778 5540885 -212496273 - L2 LINE L2 -15 3257 3150 22 0 0 0 chr3 5541187 5541209 -212495949 + AT_rich Low_complexity Low_complexity 1 22 0 237 326 12 12 chr3 5541226 5541312 -212495846 - MIR3 SINE MIR -110 98 13 190 398 54 0 chr3 5541697 5541790 -212495368 + MIR3 SINE MIR 15 112 -96 591 213 0 0 chr3 5542976 5543112 -212494046 + CT-rich Low_complexity Low_complexity 3 138 0 288 315 148 9 chr3 5544232 5544340 -212492818 - L2 LINE L2 0 3272 3150 390 333 13 19 chr3 5544596 5544755 -212492403 + Charlie8 DNA MER1_type 102 259 -2158 21 0 0 0 chr3 5545612 5545633 -212491525 + AT_rich Low_complexity Low_complexity 1 21 0 423 289 22 33 chr3 5545926 5546106 -212491052 + MIR SINE MIR 85 262 0 250 242 10 10 chr3 5546327 5546426 -212490732 + (TA)n Simple_repeat Simple_repeat 2 100 0 308 145 0 16 chr3 5546463 5546525 -212490633 + (TA)n Simple_repeat Simple_repeat 2 62 0 329 297 141 64 chr3 5547328 5547705 -212489453 + MLT1L LTR MaLR 98 503 -8 702 324 8 32 chr3 5549087 5549334 -212487824 + MIR SINE MIR 12 252 -10 201 74 0 0 chr3 5549343 5549370 -212487788 + (ATG)n Simple_repeat Simple_repeat 2 28 0 279 345 176 0 chr3 5549383 5549548 -212487610 + MIR SINE MIR 66 259 -3 228 314 0 0 chr3 5552268 5552338 -212484820 + MIR SINE MIR 51 120 -142 273 57 0 0 chr3 5552916 5552951 -212484207 + (CA)n Simple_repeat Simple_repeat 2 36 0 650 280 100 22 chr3 5554094 5554365 -212482793 - L2 LINE L2 -2 3311 3020 396 0 0 0 chr3 5555702 5555746 -212481412 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 519 101 13 0 chr3 5556326 5556405 -212480753 - MADE1 DNA Mariner 0 80 1 654 315 63 48 chr3 5556618 5557081 -212480077 + LTR16C LTR ERVL 1 470 -21 469 88 25 12 chr3 5557432 5557512 -212479646 + (TTTC)n Simple_repeat Simple_repeat 4 84 0 526 310 88 52 chr3 5557704 5558207 -212478951 + MLT1K LTR MaLR 66 586 -2 2709 123 24 7 chr3 5558964 5559380 -212477778 + MSTA LTR MaLR 5 427 -1 382 250 37 9 chr3 5559384 5559492 -212477666 + MIR SINE MIR 128 238 -24 25 31 0 0 chr3 5559509 5559541 -212477617 + AT_rich Low_complexity Low_complexity 1 32 0 271 255 0 0 chr3 5559969 5560020 -212477138 - L2 LINE L2 -10 3262 3212 1440 168 80 77 chr3 5561531 5561883 -212475275 + MLT1A1 LTR MaLR 11 363 -2 261 226 130 75 chr3 5562023 5562169 -212474989 + MIR SINE MIR 96 249 -13 25 0 0 0 chr3 5562374 5562399 -212474759 + AT_rich Low_complexity Low_complexity 1 25 0 423 342 71 29 chr3 5562587 5562827 -212474331 - MIR SINE MIR -10 252 3 186 43 0 0 chr3 5563236 5563259 -212473899 + (CATATA)n Simple_repeat Simple_repeat 2 24 0 461 283 76 60 chr3 5563462 5563830 -212473328 + L1ME4a LINE L1 5555 5928 -193 610 197 9 4 chr3 5563988 5564230 -212472928 + (TA)n Simple_repeat Simple_repeat 1 243 0 187 213 25 0 chr3 5564254 5564334 -212472824 + (TA)n Simple_repeat Simple_repeat 1 82 0 1818 113 4 0 chr3 5564481 5564728 -212472430 - AluSp SINE Alu -65 248 1 5790 243 28 20 chr3 5564768 5566739 -212470419 + L1MC/D LINE L1 3586 5570 -744 5738 195 38 15 chr3 5566732 5567125 -212470033 + L1MC3 LINE L1 6464 6847 -938 * 324 0 0 0 chr3 5567125 5567161 -212469997 + (CA)n Simple_repeat Simple_repeat 1 36 0 5738 195 38 15 chr3 5567161 5568040 -212469118 + L1MC3 LINE L1 6847 7765 -20 186 206 0 0 chr3 5568458 5568492 -212468666 + L2 LINE L2 3280 3313 0 185 352 111 37 chr3 5568706 5568922 -212468236 - MIR SINE MIR -16 246 15 1974 114 20 7 chr3 5570440 5570738 -212466420 - AluSg SINE Alu -8 302 1 323 311 87 6 chr3 5570743 5570904 -212466254 - L1ME4a LINE L1 -2 6119 5946 286 297 31 78 chr3 5570986 5571114 -212466044 + MIR SINE MIR 17 138 -124 440 321 32 43 chr3 5571126 5571403 -212465755 + L1MCb LINE L1 92 365 -6031 700 266 5 18 chr3 5571629 5571847 -212465311 + L1MEc LINE L1 715 929 -5467 * 1792 224 47 63 chr3 5571846 5572722 -212464436 + L1MCb LINE L1 333 1213 -4852 2304 100 0 0 chr3 5574115 5574425 -212462733 + AluSg SINE Alu 1 310 0 21 0 0 0 chr3 5574522 5574543 -212462615 + AT_rich Low_complexity Low_complexity 1 21 0 296 256 60 8 chr3 5574647 5574764 -212462394 + L1MC4 LINE L1 7918 8040 -2 962 149 11 0 chr3 5574825 5575000 -212462158 + CT-rich Low_complexity Low_complexity 4 180 0 2082 88 0 34 chr3 5575169 5575465 -212461693 + AluY SINE Alu 6 291 -20 345 295 94 62 chr3 5575498 5575722 -212461436 - MIR SINE MIR -13 249 19 276 321 37 28 chr3 5575749 5575858 -212461300 + MIR SINE MIR 30 139 -69 297 346 163 0 chr3 5576610 5576763 -212460395 + MER5A DNA MER1_type 10 187 -2 22 0 0 0 chr3 5577398 5577420 -212459738 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr3 5577429 5577452 -212459706 + (CAAAAA)n Simple_repeat Simple_repeat 3 25 0 186 43 0 0 chr3 5577795 5577818 -212459340 + (A)n Simple_repeat Simple_repeat 1 23 0 323 283 50 8 chr3 5577863 5577983 -212459175 - MER46C DNA MER2_type -129 209 85 24 67 0 0 chr3 5578275 5578320 -212458838 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr3 5578463 5578484 -212458674 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr3 5579860 5579884 -212457274 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 825 142 8 15 chr3 5580343 5580477 -212456681 - FLAM_C SINE Alu 0 133 1 1913 265 67 8 chr3 5580872 5581517 -212455641 - L1ME2 LINE L1 -17 6147 5465 190 197 45 0 chr3 5582166 5582232 -212454926 + GA-rich Low_complexity Low_complexity 4 72 0 307 361 32 32 chr3 5582842 5582997 -212454161 - MER5A DNA MER1_type 0 189 35 610 324 86 47 chr3 5583003 5583491 -212453667 + L3 LINE CR1 1065 1571 -6 3678 119 15 0 chr3 5584388 5584934 -212452224 + MER41A LTR ERV1 1 554 0 821 259 0 0 chr3 5585269 5585458 -212451700 - MER5A DNA MER1_type 0 189 1 2372 74 0 10 chr3 5585476 5585787 -212451371 + AluY SINE Alu 2 309 -2 286 198 0 99 chr3 5587366 5587447 -212449711 - MER66B LTR ERV1 -11 475 403 * 2216 164 57 33 chr3 5587424 5587880 -212449278 - MER41B LTR ERV1 -56 579 113 788 267 37 5 chr3 5588039 5588226 -212448932 + MER20 DNA MER1_type 1 193 -26 3370 84 8 73 chr3 5588226 5588773 -212448385 - L1M1 LINE L1 -3503 4062 3549 3086 57 0 86 chr3 5588773 5589251 -212447907 + L1PA7 LINE L1 5718 6154 0 3370 84 8 73 chr3 5589251 5589266 -212447892 - L1M1 LINE L1 -4016 3549 3535 205 318 0 0 chr3 5589852 5589915 -212447243 + MIR SINE MIR 184 246 -16 * 1869 299 120 15 chr3 5589914 5590917 -212446241 + L2 LINE L2 2185 3309 -4 2175 102 3 0 chr3 5591416 5591731 -212445427 - AluSq SINE Alu 0 313 1 21 36 0 0 chr3 5592158 5592186 -212444972 + AT_rich Low_complexity Low_complexity 1 28 0 1743 124 70 4 chr3 5592194 5592467 -212444691 + AluSx SINE Alu 1 291 -21 243 0 0 0 chr3 5593438 5593465 -212443693 + (TG)n Simple_repeat Simple_repeat 2 28 0 1801 118 92 0 chr3 5593712 5593984 -212443174 + AluSg SINE Alu 2 298 -12 403 276 118 0 chr3 5594242 5594369 -212442789 + MLT1E3 LTR MaLR 8 149 -505 974 258 57 8 chr3 5594397 5594645 -212442513 + MLT1E3 LTR MaLR 171 430 -194 2300 106 0 0 chr3 5594686 5594989 -212442169 + AluSx SINE Alu 3 305 -7 23 0 0 0 chr3 5595208 5595231 -212441927 + AT_rich Low_complexity Low_complexity 1 23 0 641 293 5 40 chr3 5595806 5596028 -212441130 + MIR SINE MIR 9 222 -40 184 182 36 73 chr3 5596388 5596443 -212440715 + L3b LINE CR1 1416 1468 -115 369 336 69 18 chr3 5596470 5596542 -212440616 - MIR SINE MIR -25 237 170 180 0 0 0 chr3 5596542 5596562 -212440596 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 369 336 69 18 chr3 5596562 5596706 -212440452 - MIR SINE MIR -92 170 10 332 302 75 0 chr3 5597592 5597698 -212439460 - L3 LINE CR1 -1 1576 1463 255 200 0 0 chr3 5597700 5597745 -212439413 + MIR SINE MIR 97 141 -121 2188 132 0 3 chr3 5597790 5598101 -212439057 + AluSx SINE Alu 3 312 0 310 252 126 17 chr3 5598277 5598396 -212438762 + MLT1J LTR MaLR 9 140 -371 300 310 41 16 chr3 5598516 5598718 -212438440 + MLT1J LTR MaLR 241 510 -1 190 371 14 0 chr3 5599440 5599510 -212437648 - L2 LINE L2 -942 2372 2302 1915 139 4 0 chr3 5599547 5599820 -212437338 + MER1A DNA MER1_type 62 335 -194 181 323 15 0 chr3 5599825 5599890 -212437268 - L2 LINE L2 -1078 2236 2171 196 333 0 13 chr3 5600544 5600619 -212436539 + MIR SINE MIR 168 241 -21 24 32 0 0 chr3 5601264 5601295 -212435863 + AT_rich Low_complexity Low_complexity 1 31 0 229 239 149 30 chr3 5603056 5603123 -212434035 - MIR SINE MIR -76 186 112 2422 135 3 3 chr3 5603191 5603553 -212433605 - THE1B LTR MaLR -1 363 2 1345 175 114 25 chr3 5604276 5604556 -212432602 + AluSx SINE Alu 6 310 -2 194 286 0 0 chr3 5604571 5604620 -212432538 - MIR SINE MIR -212 50 2 554 314 58 36 chr3 5606140 5606363 -212430795 + MIR SINE MIR 8 235 -27 984 172 0 0 chr3 5606464 5606615 -212430543 - FRAM SINE Alu -26 150 1 2575 50 0 0 chr3 5606824 5607123 -212430035 - AluY SINE Alu -12 299 1 25 0 0 0 chr3 5607723 5607748 -212429410 + AT_rich Low_complexity Low_complexity 1 25 0 289 301 0 32 chr3 5608005 5608098 -212429060 - MIR SINE MIR -95 167 78 690 130 290 0 chr3 5608361 5608499 -212428659 + AluSc SINE Alu 127 304 -5 324 283 75 12 chr3 5609450 5609623 -212427535 - MER113 DNA MER1_type? -304 217 34 3506 142 39 32 chr3 5610186 5610876 -212426282 + L1MA7 LINE L1 5597 6291 0 22 0 0 0 chr3 5610876 5610898 -212426260 + AT_rich Low_complexity Low_complexity 1 22 0 235 182 55 0 chr3 5611221 5611276 -212425882 + L2 LINE L2 3250 3307 -6 438 335 182 23 chr3 5611334 5611773 -212425385 + L2 LINE L2 2804 3312 -1 409 302 63 6 chr3 5611923 5612082 -212425076 + MLT1F LTR MaLR 1 168 -374 229 218 11 35 chr3 5612489 5612576 -212424582 + (TTTA)n Simple_repeat Simple_repeat 1 85 0 291 291 60 46 chr3 5612638 5612789 -212424369 - MIR SINE MIR -105 157 5 508 361 47 29 chr3 5613896 5614237 -212422921 + LTR16C LTR ERVL 137 483 -8 313 286 24 0 chr3 5614268 5614352 -212422806 - L2 LINE L2 -6 3307 3222 2605 103 16 0 chr3 5614493 5614862 -212422296 - THE1C LTR MaLR 0 375 1 194 352 114 0 chr3 5615353 5615441 -212421717 + L3b LINE CR1 1459 1556 -27 202 182 0 0 chr3 5615563 5615596 -212421562 + (TG)n Simple_repeat Simple_repeat 2 34 0 317 279 91 71 chr3 5615646 5615844 -212421314 - MIR SINE MIR -50 212 19 23 33 0 0 chr3 5615927 5615957 -212421201 + AT_rich Low_complexity Low_complexity 1 30 0 366 268 192 27 chr3 5616099 5616323 -212420835 + MIR SINE MIR 2 262 0 764 211 155 0 chr3 5616359 5616553 -212420605 + MER58A DNA MER1_type 1 224 0 327 345 84 20 chr3 5618228 5618718 -212418440 + L1ME4a LINE L1 5304 5824 -297 702 313 175 18 chr3 5618735 5619192 -212417966 + L2 LINE L2 2102 2630 -684 1485 213 0 11 chr3 5619283 5619569 -212417589 + AluJb SINE Alu 6 288 -24 188 33 0 33 chr3 5619574 5619604 -212417554 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 865 195 6 18 chr3 5619604 5619773 -212417385 + FRAM SINE Alu 1 162 -14 261 83 0 0 chr3 5619996 5620032 -212417126 + (TTTC)n Simple_repeat Simple_repeat 1 36 0 967 264 136 40 chr3 5620130 5620580 -212416578 + MLT1H LTR MaLR 3 495 -54 297 359 31 8 chr3 5620814 5620942 -212416216 + L2 LINE L2 3142 3272 0 277 244 100 91 chr3 5621035 5621265 -212415893 + L1ME3A LINE L1 5785 6016 -154 21 36 0 0 chr3 5621396 5621424 -212415734 + AT_rich Low_complexity Low_complexity 1 28 0 1379 176 114 29 chr3 5621588 5621861 -212415297 + MER1B DNA MER1_type 1 296 -43 300 267 83 25 chr3 5622956 5623076 -212414082 + L1ME4a LINE L1 5947 6073 -48 2048 332 60 34 chr3 5623771 5624994 -212412164 - L2 LINE L2 -2050 1264 11 244 268 0 18 chr3 5625213 5625269 -212411889 + MIR SINE MIR 47 101 -161 23 0 0 0 chr3 5625314 5625337 -212411821 + AT_rich Low_complexity Low_complexity 1 23 0 199 54 54 36 chr3 5625479 5625535 -212411623 + A-rich Low_complexity Low_complexity 6 62 0 210 190 177 76 chr3 5626092 5626171 -212410987 + L2 LINE L2 3227 3313 0 554 229 179 0 chr3 5626367 5626507 -212410651 + MER5A DNA MER1_type 24 188 -1 185 349 32 16 chr3 5626512 5626575 -212410583 + MIR SINE MIR 13 76 -186 363 89 0 0 chr3 5626575 5626631 -212410527 - AluSp/q SINE Alu -3 300 245 1964 115 0 0 chr3 5626631 5626891 -212410267 - AluSq SINE Alu -33 280 21 420 262 40 24 chr3 5626891 5627017 -212410141 + MIR SINE MIR 61 188 -74 186 43 0 0 chr3 5628261 5628284 -212408874 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 296 291 70 12 chr3 5628328 5628500 -212408658 + L1ME3A LINE L1 5039 5220 -926 1567 262 89 46 chr3 5628547 5629378 -212407780 + L1ME3A LINE L1 5288 6154 -16 1438 111 65 0 chr3 5629413 5629629 -212407529 - MER30 DNA MER1_type 0 230 1 3100 101 28 4 chr3 5629755 5630112 -212407046 - L1PB1 LINE L1 0 6151 5776 1038 39 24 19 chr3 5630112 5630321 -212406837 + (TA)n Simple_repeat Simple_repeat 1 210 0 3100 101 28 4 chr3 5630321 5630424 -212406734 - L1PB1 LINE L1 -375 5776 5677 1958 113 57 104 chr3 5630424 5630894 -212406264 + LTR7 LTR ERV1 1 448 -2 505 84 0 0 chr3 5630896 5630967 -212406191 + HERVH LTR ERV1 1 71 -7642 * 13507 132 25 24 chr3 5630947 5633395 -212403763 + HERVH LTR ERV1 437 2995 -4718 964 127 7 0 chr3 5633374 5633524 -212403634 + HERVH LTR ERV1 3140 3290 -4423 * 1027 136 6 12 chr3 5633514 5633676 -212403482 + HERVH LTR ERV1 3492 3652 -4061 * 4585 59 5 10 chr3 5633668 5634279 -212402879 + HERVH LTR ERV1 7106 7713 0 1704 110 54 156 chr3 5634279 5634778 -212402380 + LTR7 LTR ERV1 1 448 -2 5570 187 3 5 chr3 5634803 5636419 -212400739 - L1P5 LINE L1 -470 5681 4069 1139 231 8 0 chr3 5636407 5636675 -212400483 - L1 LINE L1 -2686 4176 3907 * 12330 130 86 15 chr3 5636673 5638418 -212398740 - L1PBa LINE L1 -3257 3605 1590 2357 87 0 3 chr3 5638418 5638716 -212398442 - AluY SINE Alu -12 299 3 12330 130 86 15 chr3 5638716 5639744 -212397414 - L1PBa LINE L1 -5272 1590 636 1037 159 20 0 chr3 5639746 5639941 -212397217 - L1PBa LINE L1 -6663 200 2 30 27 0 0 chr3 5640044 5640081 -212397077 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr3 5641298 5641320 -212395838 + AT_rich Low_complexity Low_complexity 1 22 0 276 340 60 0 chr3 5641345 5641445 -212395713 + MIR SINE MIR 57 162 -100 2483 69 0 3 chr3 5641758 5642063 -212395095 - AluSg SINE Alu -6 304 1 768 256 67 0 chr3 5642821 5643016 -212394142 + MIR SINE MIR 28 235 -27 224 295 152 0 chr3 5643778 5643883 -212393275 - MIR3 SINE MIR -25 183 63 889 197 57 0 chr3 5644321 5644514 -212392644 - LTR16A1 LTR ERVL 0 457 254 403 344 42 47 chr3 5644741 5644933 -212392225 + MIR SINE MIR 20 210 -52 213 363 24 24 chr3 5645172 5645340 -212391818 - MIR SINE MIR -92 170 3 263 203 14 0 chr3 5646438 5646507 -212390651 + (TATG)n Simple_repeat Simple_repeat 3 72 0 1209 243 42 48 chr3 5648676 5649158 -212388000 - MER39 LTR ERV1 -20 687 1 831 167 0 0 chr3 5649338 5649470 -212387688 + AluSq/x SINE Alu 1 132 -181 2153 122 7 7 chr3 5650470 5650774 -212386384 + AluSx SINE Alu 1 304 -8 213 94 0 0 chr3 5650816 5650848 -212386310 + (TG)n Simple_repeat Simple_repeat 1 32 0 2274 151 0 34 chr3 5650946 5651383 -212385775 - L1MA6 LINE L1 -1 6299 5878 237 209 233 12 chr3 5651384 5651470 -212385688 + MER5A DNA MER1_type 77 181 -8 209 393 14 48 chr3 5651489 5651634 -212385524 + MIR SINE MIR 50 189 -73 353 250 46 46 chr3 5652168 5652276 -212384882 - MIR3 SINE MIR -47 161 54 21 0 0 0 chr3 5652426 5652447 -212384711 + AT_rich Low_complexity Low_complexity 1 21 0 1305 99 42 0 chr3 5652622 5652814 -212384344 + L1PA13 LINE L1 5963 6162 -1 247 111 19 19 chr3 5654242 5654296 -212382862 + (TTTTC)n Simple_repeat Simple_repeat 4 57 0 210 67 67 0 chr3 5654324 5654369 -212382789 + CT-rich Low_complexity Low_complexity 1 48 0 603 236 15 64 chr3 5654423 5654626 -212382532 + L1ME3 LINE L1 5940 6132 -30 601 233 114 52 chr3 5654929 5655156 -212382002 - L1MC4 LINE L1 -1 7873 7662 1592 177 69 0 chr3 5655156 5655444 -212381714 - AluJo SINE Alu -4 308 1 601 233 114 52 chr3 5655444 5655486 -212381672 - L1MC4 LINE L1 -212 7662 7624 1459 198 50 3 chr3 5655486 5655784 -212381374 - AluJb SINE Alu 0 312 1 601 233 114 52 chr3 5655784 5655918 -212381240 - L1MC4 LINE L1 -250 7624 7426 480 258 42 42 chr3 5656189 5656379 -212380779 - L1MC4a LINE L1 -439 7369 7180 525 277 63 29 chr3 5656503 5656638 -212380520 - L1MC4 LINE L1 -1081 6961 6813 203 0 0 36 chr3 5656638 5656666 -212380492 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 525 277 63 29 chr3 5656666 5656768 -212380390 - L1MC4 LINE L1 -1229 6813 6716 322 261 12 0 chr3 5656830 5656924 -212380234 - L1MC4 LINE L1 -1458 6545 6443 421 251 127 59 chr3 5657629 5658107 -212379051 + MER34B LTR ERV1 6 565 0 21 36 0 0 chr3 5658446 5658474 -212378684 + AT_rich Low_complexity Low_complexity 1 28 0 200 83 0 28 chr3 5658524 5658560 -212378598 + (CAT)n Simple_repeat Simple_repeat 2 36 0 276 367 39 8 chr3 5658560 5658688 -212378470 - MIR3 SINE MIR -70 138 7 291 353 0 17 chr3 5658797 5658913 -212378245 + MIR SINE MIR 33 146 -62 1210 254 90 95 chr3 5660175 5660459 -212376699 + HAL1b LINE L1 83 367 -981 1396 196 28 35 chr3 5660459 5660744 -212376414 + AluJo SINE Alu 1 283 -19 1210 254 90 95 chr3 5660744 5660908 -212376250 + HAL1b LINE L1 367 530 -818 2483 81 0 3 chr3 5660908 5661217 -212375941 + AluSq SINE Alu 1 308 -5 1210 254 90 95 chr3 5661217 5662039 -212375119 + HAL1b LINE L1 530 1348 0 313 301 49 42 chr3 5662982 5663125 -212374033 - L1MC4 LINE L1 -1340 6702 6559 540 141 12 0 chr3 5663160 5663245 -212373913 + AluJ/FLAM SINE Alu 1 86 -226 1262 249 34 25 chr3 5664462 5664787 -212372371 + MER45C DNA AcHobo 626 953 0 318 266 53 21 chr3 5664787 5664881 -212372277 - MIR SINE MIR -138 124 28 280 100 0 50 chr3 5665103 5665163 -212371995 + (TTCCC)n Simple_repeat Simple_repeat 4 60 0 713 333 17 8 chr3 5666676 5666916 -212370242 - MIR SINE MIR -18 244 3 220 321 44 57 chr3 5667004 5667163 -212369995 - L2 LINE L2 -182 3090 2934 22 0 0 0 chr3 5667701 5667723 -212369435 + AT_rich Low_complexity Low_complexity 1 22 0 2326 291 105 32 chr3 5667723 5669364 -212367794 - L2 LINE L2 0 3313 1266 346 281 31 62 chr3 5669444 5669636 -212367522 + LTR37A LTR ERV1 55 240 -186 284 135 0 0 chr3 5669636 5669688 -212367470 - L1MB8 LINE L1 0 6178 6127 846 204 25 0 chr3 5669691 5669887 -212367271 + LTR37A LTR ERV1 218 418 -8 1708 215 52 48 chr3 5670151 5670654 -212366504 - MLT1D LTR MaLR 0 505 1 1914 147 47 26 chr3 5671398 5671739 -212365419 - MER7A DNA MER2_type 0 346 1 2391 46 0 10 chr3 5672914 5673255 -212363903 - AluY SINE Alu 0 311 1 340 272 99 74 chr3 5673629 5673912 -212363246 - L1ME4a LINE L1 -221 5900 5611 1679 168 30 16 chr3 5674244 5674370 -212362788 + AluJb SINE Alu 1 124 -188 333 0 0 0 chr3 5674370 5674407 -212362751 + (CA)n Simple_repeat Simple_repeat 2 38 0 1679 168 30 16 chr3 5674407 5674584 -212362574 + AluJb SINE Alu 124 308 -4 1551 174 87 0 chr3 5675173 5675438 -212361720 + AluSx SINE Alu 1 288 -24 1347 237 47 60 chr3 5675961 5676027 -212361131 - MLT1C LTR MaLR 0 467 402 1880 173 0 3 chr3 5676027 5676333 -212360825 + AluJb SINE Alu 1 305 -7 1347 237 47 60 chr3 5676333 5676734 -212360424 - MLT1C LTR MaLR -65 402 6 1999 149 10 0 chr3 5676759 5677067 -212360091 - AluSq SINE Alu -2 311 1 249 244 58 35 chr3 5677183 5677269 -212359889 + MER103 DNA DNA 69 156 -10 389 232 125 9 chr3 5677713 5677825 -212359333 - MIR SINE MIR -64 198 74 285 326 0 21 chr3 5678647 5678742 -212358416 + L2 LINE L2 3219 3311 -2 271 231 66 55 chr3 5678947 5679038 -212358120 - L2 LINE L2 -1 3312 3221 23 0 0 0 chr3 5679585 5679608 -212357550 + AT_rich Low_complexity Low_complexity 1 23 0 2352 224 20 27 chr3 5680098 5680660 -212356498 - MER74A LTR ERVL 0 558 1 486 151 151 129 chr3 5680702 5680927 -212356231 + MER106A DNA MER1_type 1 230 -6 237 208 57 0 chr3 5681463 5681516 -212355642 + U6 snRNA snRNA 24 79 -28 387 262 16 8 chr3 5681571 5681697 -212355461 + L1ME2 LINE L1 6038 6164 0 523 306 36 39 chr3 5681942 5682183 -212354975 - MIR SINE MIR 0 262 23 213 341 32 32 chr3 5683092 5683215 -212353943 - L2 LINE L2 -217 3055 2933 1900 250 120 56 chr3 5683608 5684356 -212352802 - MER21B LTR ERV1 -48 815 20 320 235 20 71 chr3 5684357 5684455 -212352703 - MER21B LTR ERV1 -759 104 12 273 373 55 39 chr3 5685108 5685140 -212352018 + MIR3 SINE MIR 1 31 -177 1464 163 22 117 chr3 5685140 5685552 -212351606 + MLT1A2 LTR MaLR 2 374 0 273 373 55 39 chr3 5685552 5685671 -212351487 + MIR3 SINE MIR 31 155 -53 382 237 21 0 chr3 5685719 5685812 -212351346 - MER117 DNA MER1_type -35 162 68 284 0 28 0 chr3 5686429 5686465 -212350693 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 394 267 298 0 chr3 5687721 5687852 -212349306 + MER45A DNA AcHobo 1 170 -8 530 253 222 0 chr3 5689639 5689833 -212347325 - MIR SINE MIR -21 241 5 196 231 0 19 chr3 5689861 5689913 -212347245 - MIR SINE MIR -32 230 180 236 366 0 0 chr3 5690028 5690110 -212347048 + Charlie1 DNA MER1_type 1 82 -2679 27 29 0 0 chr3 5690573 5690607 -212346551 + AT_rich Low_complexity Low_complexity 1 34 0 1925 262 59 23 chr3 5691239 5691811 -212345347 + MLT1E LTR MaLR 1 593 0 26 30 0 0 chr3 5692109 5692142 -212345016 + AT_rich Low_complexity Low_complexity 1 33 0 211 374 84 7 chr3 5694628 5694783 -212342375 - MIR SINE MIR -50 212 46 228 213 0 0 chr3 5695265 5695326 -212341832 + CT-rich Low_complexity Low_complexity 2 62 0 388 266 132 60 chr3 5695375 5695739 -212341419 + L1MCc LINE L1 23 412 -6011 1630 263 89 30 chr3 5695989 5696171 -212340987 + L1MCc LINE L1 828 998 -5632 2120 184 26 26 chr3 5696171 5696595 -212340563 + MSTB LTR MaLR 1 424 -2 1630 263 89 30 chr3 5696595 5697259 -212339899 + L1MCc LINE L1 998 1736 -4894 2350 106 0 0 chr3 5697306 5697608 -212339550 + AluSx SINE Alu 1 302 -10 789 273 28 22 chr3 5697662 5698094 -212339064 + L1MCc LINE L1 2138 2478 -4463 667 276 98 33 chr3 5698085 5698685 -212338473 - L1MC4 LINE L1 -127 7681 7186 * 1685 118 33 0 chr3 5699088 5699333 -212337825 - AluSp SINE Alu -22 291 39 499 327 69 98 chr3 5699354 5700136 -212337022 + L2 LINE L2 2218 2976 -338 1608 172 48 0 chr3 5700262 5700552 -212336606 - AluJb SINE Alu -8 304 1 249 316 89 0 chr3 5700654 5700733 -212336425 + L2 LINE L2 3150 3235 -37 229 257 86 29 chr3 5700735 5700805 -212336353 - L2 LINE L2 -8 3305 3232 403 327 25 6 chr3 5701541 5701700 -212335458 - MIR3 SINE MIR -2 206 45 619 256 45 25 chr3 5701956 5702155 -212335003 + MIR SINE MIR 46 248 -14 216 350 82 0 chr3 5704693 5704790 -212332368 - MIR3 SINE MIR -48 160 56 406 289 87 0 chr3 5705283 5705387 -212331771 + L2 LINE L2 3158 3270 -2 189 277 21 0 chr3 5707697 5707744 -212329414 + L2 LINE L2 2925 2972 -342 270 339 68 41 chr3 5707809 5708030 -212329128 + L2 LINE L2 3085 3311 -2 392 287 64 35 chr3 5708492 5708711 -212328447 - MIR SINE MIR -17 245 20 310 259 99 15 chr3 5709216 5709347 -212327811 + MIR SINE MIR 106 247 -15 1759 203 30 86 chr3 5709355 5709878 -212327280 + MLT1D LTR MaLR 1 618 -8 23 0 0 0 chr3 5711183 5711206 -212325952 + AT_rich Low_complexity Low_complexity 1 23 0 42095 35 25 2 chr3 5711544 5717555 -212319603 - L1PA2 LINE L1 0 6155 1 338 291 122 35 chr3 5718855 5719085 -212318073 - MIR SINE MIR -12 250 1 338 310 20 0 chr3 5720277 5720377 -212316781 + L1MC4 LINE L1 6602 6703 -1339 316 316 0 50 chr3 5720356 5720495 -212316663 - L1MC4 LINE L1 -1340 6702 6571 * 676 152 29 14 chr3 5720884 5721022 -212316136 - L1MB1 LINE L1 -6 6162 6023 2173 181 17 67 chr3 5721094 5721570 -212315588 + MER66A LTR ERV1 27 478 0 22 0 0 0 chr3 5722998 5723020 -212314138 + AT_rich Low_complexity Low_complexity 1 22 0 645 295 18 5 chr3 5724312 5724529 -212312629 + MER58A DNA MER1_type 2 221 -3 348 239 182 115 chr3 5725480 5725534 -212311624 - MER58A DNA MER1_type -2197 223 174 1120 129 31 26 chr3 5725534 5725728 -212311430 - L1PA16 LINE L1 -10 6156 5962 348 239 182 115 chr3 5725728 5725882 -212311276 - MER58A DNA MER1_type -2246 174 1 265 344 164 0 chr3 5726374 5726496 -212310662 + MIR SINE MIR 107 248 -14 221 273 0 0 chr3 5726554 5726609 -212310549 - L2 LINE L2 -5 3308 3254 269 306 189 0 chr3 5730052 5730163 -212306995 + MIR SINE MIR 20 151 -57 31 82 0 0 chr3 5731253 5731326 -212305832 + AT_rich Low_complexity Low_complexity 1 73 0 1988 142 10 0 chr3 5734239 5734542 -212302616 - AluSx SINE Alu -1 311 6 1201 46 0 0 chr3 5734682 5734833 -212302325 - L1PA4 LINE L1 -78 6077 5927 363 42 0 0 chr3 5734833 5734878 -212302280 + L1PA3 LINE L1 6105 6152 -3 254 238 138 0 chr3 5734896 5734976 -212302182 + L1MC5 LINE L1 7474 7564 -397 239 356 22 11 chr3 5735631 5735721 -212301437 - L2 LINE L2 0 3313 3223 4734 199 107 39 chr3 5736174 5737446 -212299712 - MER45R DNA AcHobo -1 1580 222 260 130 0 0 chr3 5737590 5737636 -212299522 - MER45C DNA AcHobo -813 140 95 2005 114 20 7 chr3 5738327 5738625 -212298533 - AluSg SINE Alu -8 302 1 322 311 87 6 chr3 5738630 5738791 -212298367 - L1ME4a LINE L1 -2 6119 5946 281 297 31 78 chr3 5738873 5739001 -212298157 + MIR SINE MIR 17 138 -124 429 321 32 43 chr3 5739013 5739290 -212297868 + L1MCb LINE L1 92 365 -6031 679 266 5 18 chr3 5739516 5739734 -212297424 + L1MEc LINE L1 715 929 -5467 * 1759 224 47 63 chr3 5739733 5740609 -212296549 + L1MCb LINE L1 333 1213 -4852 2076 128 0 0 chr3 5742002 5742300 -212294858 + AluSg SINE Alu 1 298 -12 403 276 118 0 chr3 5742558 5742685 -212294473 + MLT1E3 LTR MaLR 8 149 -505 974 258 57 8 chr3 5742713 5742961 -212294197 + MLT1E3 LTR MaLR 171 430 -194 2300 106 0 0 chr3 5743002 5743305 -212293853 + AluSx SINE Alu 3 305 -7 21 43 0 0 chr3 5743524 5743547 -212293611 + AT_rich Low_complexity Low_complexity 1 23 0 641 293 5 40 chr3 5744122 5744344 -212292814 + MIR SINE MIR 9 222 -40 184 182 36 73 chr3 5744704 5744759 -212292399 + L3b LINE CR1 1416 1468 -115 369 336 69 18 chr3 5744786 5744858 -212292300 - MIR SINE MIR -25 237 170 180 0 0 0 chr3 5744858 5744878 -212292280 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 369 336 69 18 chr3 5744878 5745022 -212292136 - MIR SINE MIR -92 170 10 332 302 75 0 chr3 5745908 5746014 -212291144 - L3 LINE CR1 -1 1576 1463 255 200 0 0 chr3 5746016 5746061 -212291097 + MIR SINE MIR 97 141 -121 2188 132 0 3 chr3 5746106 5746417 -212290741 + AluSx SINE Alu 3 312 0 310 252 126 17 chr3 5746593 5746712 -212290446 + MLT1J LTR MaLR 9 140 -371 300 310 41 16 chr3 5746832 5747034 -212290124 + MLT1J LTR MaLR 241 510 -1 190 371 14 0 chr3 5747756 5747826 -212289332 - L2 LINE L2 -942 2372 2302 1915 139 4 0 chr3 5747863 5748136 -212289022 + MER1A DNA MER1_type 62 335 -194 181 323 15 0 chr3 5748141 5748206 -212288952 - L2 LINE L2 -1078 2236 2171 196 333 0 13 chr3 5748860 5748935 -212288223 + MIR SINE MIR 168 241 -21 24 32 0 0 chr3 5749580 5749611 -212287547 + AT_rich Low_complexity Low_complexity 1 31 0 987 74 0 15 chr3 5750577 5750712 -212286446 - AluSq/x SINE Alu -179 133 1 21 36 0 0 chr3 5751149 5751177 -212285981 + AT_rich Low_complexity Low_complexity 1 28 0 1743 124 70 4 chr3 5751185 5751458 -212285700 + AluSx SINE Alu 1 291 -21 340 272 99 74 chr3 5751942 5752225 -212284933 - L1ME4a LINE L1 -221 5900 5611 2191 124 0 3 chr3 5752552 5752859 -212284299 + AluSx SINE Alu 1 306 -6 276 340 60 0 chr3 5753172 5753272 -212283886 - MIR SINE MIR -100 162 57 22 0 0 0 chr3 5753297 5753319 -212283839 + AT_rich Low_complexity Low_complexity 1 22 0 30 27 0 0 chr3 5754536 5754573 -212282585 + AT_rich Low_complexity Low_complexity 1 37 0 1037 159 20 0 chr3 5754676 5754871 -212282287 + L1PBa LINE L1 2 200 -6663 3402 120 23 0 chr3 5754873 5755901 -212281257 + L1PBa LINE L1 636 1834 -5029 1502 92 7 63 chr3 5755901 5756204 -212280954 + AluY SINE Alu 3 288 -23 211 197 45 0 chr3 5761929 5761995 -212275163 + (CCAA)n Simple_repeat Simple_repeat 2 70 0 25 0 0 0 chr3 5762504 5762529 -212274629 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr3 5767064 5767086 -212270072 + AT_rich Low_complexity Low_complexity 1 22 0 192 111 0 0 chr3 5767165 5767201 -212269957 + (TG)n Simple_repeat Simple_repeat 2 37 0 26 0 0 0 chr3 5767290 5767316 -212269842 + AT_rich Low_complexity Low_complexity 1 26 0 716 81 52 17 chr3 5767368 5767540 -212269618 + (CAAA)n Simple_repeat Simple_repeat 2 179 0 216 0 0 0 chr3 5767958 5767982 -212269176 + (T)n Simple_repeat Simple_repeat 1 24 0 183 42 0 0 chr3 5768618 5768642 -212268516 + (TTTTC)n Simple_repeat Simple_repeat 1 24 0 3951 143 53 18 chr3 5773254 5773411 -212263747 - L1PBa LINE L1 -4873 1990 1840 2357 87 0 3 chr3 5773411 5773709 -212263449 - AluY SINE Alu -12 299 3 3951 143 53 18 chr3 5773709 5774596 -212262562 - L1PBa LINE L1 -5023 1840 765 246 192 0 0 chr3 5776957 5777009 -212260149 + A-rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr3 5777153 5777176 -212259982 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 5778736 5778758 -212258400 + AT_rich Low_complexity Low_complexity 1 22 0 322 297 0 0 chr3 5782938 5783029 -212254129 + L1MC4 LINE L1 6613 6703 -1339 198 0 0 0 chr3 5783082 5783104 -212254054 + (TA)n Simple_repeat Simple_repeat 2 23 0 3927 148 26 8 chr3 5784053 5785179 -212251979 + L1PBa LINE L1 2460 3605 -3257 1139 231 8 0 chr3 5785177 5785445 -212251713 + L1 LINE L1 3907 4176 -2686 * 7948 118 6 10 chr3 5785435 5786684 -212250474 + L1P LINE L1 4071 5315 -831 732 134 0 0 chr3 5786853 5786965 -212250193 + MER41A LTR ERV1 443 554 0 821 259 0 0 chr3 5787300 5787489 -212249669 - MER5A DNA MER1_type 0 189 1 2396 68 0 10 chr3 5787507 5787817 -212249341 + AluY SINE Alu 2 308 -3 286 198 0 99 chr3 5789397 5789478 -212247680 - MER66B LTR ERV1 -11 475 403 * 2192 167 57 33 chr3 5789455 5789911 -212247247 - MER41B LTR ERV1 -56 579 113 788 267 37 5 chr3 5790070 5790257 -212246901 + MER20 DNA MER1_type 1 193 -26 3339 85 8 73 chr3 5790257 5790804 -212246354 - L1M1 LINE L1 -3503 4062 3549 3086 57 0 86 chr3 5790804 5791282 -212245876 + L1PA7 LINE L1 5718 6154 0 3339 85 8 73 chr3 5791282 5791297 -212245861 - L1M1 LINE L1 -4016 3549 3535 197 318 0 0 chr3 5791883 5791946 -212245212 + MIR SINE MIR 184 246 -16 * 1869 299 120 15 chr3 5791945 5792948 -212244210 + L2 LINE L2 2185 3309 -4 2201 96 3 0 chr3 5793447 5793762 -212243396 - AluSq SINE Alu 0 313 1 21 36 0 0 chr3 5794189 5794217 -212242941 + AT_rich Low_complexity Low_complexity 1 28 0 1743 124 70 4 chr3 5794225 5794498 -212242660 + AluSx SINE Alu 1 291 -21 243 0 0 0 chr3 5795469 5795496 -212241662 + (TG)n Simple_repeat Simple_repeat 2 28 0 1801 118 92 0 chr3 5795743 5796015 -212241143 + AluSg SINE Alu 2 298 -12 403 276 118 0 chr3 5796273 5796400 -212240758 + MLT1E3 LTR MaLR 8 149 -505 951 263 38 8 chr3 5796428 5796664 -212240494 + MLT1E3 LTR MaLR 171 413 -211 2349 104 0 0 chr3 5796717 5797025 -212240133 + AluSx SINE Alu 3 310 -2 23 0 0 0 chr3 5797244 5797267 -212239891 + AT_rich Low_complexity Low_complexity 1 23 0 641 293 5 40 chr3 5797842 5798064 -212239094 + MIR SINE MIR 9 222 -40 184 182 36 73 chr3 5798428 5798483 -212238675 + L3b LINE CR1 1416 1468 -115 369 336 69 18 chr3 5798510 5798582 -212238576 - MIR SINE MIR -25 237 170 180 0 0 0 chr3 5798582 5798602 -212238556 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 369 336 69 18 chr3 5798602 5798746 -212238412 - MIR SINE MIR -92 170 10 325 302 75 0 chr3 5799632 5799738 -212237420 - L3 LINE CR1 -1 1576 1463 255 200 0 0 chr3 5799740 5799785 -212237373 + MIR SINE MIR 97 141 -121 2134 139 0 3 chr3 5799830 5800139 -212237019 + AluSx SINE Alu 3 310 -2 310 252 126 17 chr3 5800309 5800428 -212236730 + MLT1J LTR MaLR 9 140 -371 300 310 41 16 chr3 5800548 5800750 -212236408 + MLT1J LTR MaLR 241 510 -1 190 371 14 0 chr3 5801472 5801542 -212235616 - L2 LINE L2 -942 2372 2302 1897 143 4 0 chr3 5801579 5801852 -212235306 + MER1A DNA MER1_type 62 335 -194 181 323 15 0 chr3 5801857 5801922 -212235236 - L2 LINE L2 -1078 2236 2171 190 297 247 18 chr3 5802015 5802396 -212234762 - L2 LINE L2 -1319 1995 1528 196 333 0 13 chr3 5802576 5802651 -212234507 + MIR SINE MIR 168 241 -21 23 33 0 0 chr3 5803296 5803326 -212233832 + AT_rich Low_complexity Low_complexity 1 30 0 229 239 149 30 chr3 5805087 5805154 -212232004 - MIR SINE MIR -76 186 112 2431 135 3 3 chr3 5805221 5805584 -212231574 - THE1B LTR MaLR 0 364 2 1374 167 116 25 chr3 5806307 5806583 -212230575 + AluSx SINE Alu 6 306 -6 194 286 0 0 chr3 5806606 5806655 -212230503 - MIR SINE MIR -212 50 2 554 305 58 36 chr3 5808176 5808399 -212228759 + MIR SINE MIR 8 235 -27 1016 166 0 28 chr3 5808470 5808651 -212228507 - FRAM SINE Alu -1 175 1 2524 64 0 0 chr3 5808860 5809158 -212228000 - AluY SINE Alu -13 298 1 25 0 0 0 chr3 5809758 5809783 -212227375 + AT_rich Low_complexity Low_complexity 1 25 0 289 301 0 32 chr3 5810040 5810133 -212227025 - MIR SINE MIR -95 167 78 676 132 294 0 chr3 5810396 5810532 -212226626 + AluSc SINE Alu 127 302 -7 324 283 75 12 chr3 5811483 5811656 -212225502 - MER113 DNA MER1_type? -304 217 34 3518 142 39 29 chr3 5812219 5812907 -212224251 + L1MA7 LINE L1 5597 6291 0 22 0 0 0 chr3 5812907 5812929 -212224229 + AT_rich Low_complexity Low_complexity 1 22 0 235 182 55 0 chr3 5813252 5813307 -212223851 + L2 LINE L2 3250 3307 -6 438 335 182 23 chr3 5813365 5813804 -212223354 + L2 LINE L2 2804 3312 -1 384 308 63 6 chr3 5813954 5814113 -212223045 + MLT1F LTR MaLR 1 168 -374 229 218 11 35 chr3 5814520 5814607 -212222551 + (TTTA)n Simple_repeat Simple_repeat 1 85 0 291 291 60 46 chr3 5814669 5814820 -212222338 - MIR SINE MIR -105 157 5 508 361 47 29 chr3 5815927 5816268 -212220890 + LTR16C LTR ERVL 137 483 -8 313 286 24 0 chr3 5816299 5816383 -212220775 - L2 LINE L2 -6 3307 3222 2605 103 16 0 chr3 5816524 5816893 -212220265 - THE1C LTR MaLR 0 375 1 206 336 173 0 chr3 5817368 5817472 -212219686 + L3b LINE CR1 1435 1556 -27 202 182 0 0 chr3 5817594 5817627 -212219531 + (TG)n Simple_repeat Simple_repeat 2 34 0 317 279 91 71 chr3 5817677 5817875 -212219283 - MIR SINE MIR -50 212 19 389 263 192 27 chr3 5818130 5818354 -212218804 + MIR SINE MIR 2 262 0 746 216 155 0 chr3 5818390 5818584 -212218574 + MER58A DNA MER1_type 1 224 0 319 345 84 20 chr3 5820259 5820749 -212216409 + L1ME4a LINE L1 5304 5824 -297 712 319 168 17 chr3 5820766 5821242 -212215916 + L2 LINE L2 2102 2649 -665 1491 213 0 11 chr3 5821314 5821600 -212215558 + AluJb SINE Alu 6 288 -24 188 33 0 33 chr3 5821605 5821635 -212215523 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 865 195 6 18 chr3 5821635 5821804 -212215354 + FRAM SINE Alu 1 162 -14 252 86 0 0 chr3 5822027 5822062 -212215096 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 986 262 136 40 chr3 5822162 5822612 -212214546 + MLT1H LTR MaLR 3 495 -54 299 333 37 9 chr3 5822846 5822954 -212214204 + L2 LINE L2 3142 3252 -20 277 244 100 91 chr3 5823067 5823297 -212213861 + L1ME3A LINE L1 5785 6016 -154 22 56 0 0 chr3 5823374 5823410 -212213748 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr3 5823428 5823456 -212213702 + AT_rich Low_complexity Low_complexity 1 28 0 1379 176 114 29 chr3 5823620 5823893 -212213265 + MER1B DNA MER1_type 1 296 -43 300 267 83 25 chr3 5824988 5825108 -212212050 + L1ME4a LINE L1 5947 6073 -48 1860 331 77 36 chr3 5825803 5827007 -212210151 - L2 LINE L2 -2050 1264 11 258 237 51 17 chr3 5827223 5827282 -212209876 + MIR SINE MIR 41 101 -161 23 0 0 0 chr3 5827327 5827350 -212209808 + AT_rich Low_complexity Low_complexity 1 23 0 199 54 54 36 chr3 5827492 5827548 -212209610 + A-rich Low_complexity Low_complexity 6 62 0 210 190 177 76 chr3 5828107 5828186 -212208972 + L2 LINE L2 3227 3313 0 554 229 179 0 chr3 5828382 5828522 -212208636 + MER5A DNA MER1_type 24 188 -1 185 349 32 16 chr3 5828527 5828590 -212208568 + MIR SINE MIR 13 76 -186 363 89 0 0 chr3 5828590 5828646 -212208512 - AluSp/q SINE Alu -3 300 245 1932 119 0 0 chr3 5828646 5828906 -212208252 - AluSq SINE Alu -33 280 21 420 262 40 24 chr3 5828906 5829032 -212208126 + MIR SINE MIR 61 188 -74 186 43 0 0 chr3 5830278 5830301 -212206857 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 283 296 70 12 chr3 5830345 5830517 -212206641 + L1ME3A LINE L1 5039 5220 -926 1586 261 89 46 chr3 5830564 5831395 -212205763 + L1ME3A LINE L1 5288 6154 -16 1438 111 65 0 chr3 5831430 5831646 -212205512 - MER30 DNA MER1_type 0 230 1 3162 95 32 2 chr3 5831772 5832129 -212205029 - L1PB1 LINE L1 0 6151 5775 940 79 14 0 chr3 5832129 5832268 -212204890 + (TA)n Simple_repeat Simple_repeat 1 141 0 3162 95 32 2 chr3 5832268 5832371 -212204787 - L1PB1 LINE L1 -376 5775 5677 1972 111 57 104 chr3 5832371 5832841 -212204317 + LTR7 LTR ERV1 1 448 -2 481 99 0 0 chr3 5832843 5832914 -212204244 + HERVH LTR ERV1 1 71 -7642 * 8649 119 34 23 chr3 5832894 5834442 -212202716 + HERVH LTR ERV1 460 2172 -5541 629 41 41 0 chr3 5884607 5884704 -212152454 + (TA)n Simple_repeat Simple_repeat 2 102 0 646 136 10 0 chr3 5884704 5884807 -212152351 - L1P5 LINE L1 -371 5780 5677 2009 110 55 104 chr3 5884807 5885278 -212151880 + LTR7 LTR ERV1 1 448 -2 492 99 0 0 chr3 5885280 5885351 -212151807 + HERVH LTR ERV1 1 71 -7642 * 13676 127 22 22 chr3 5885340 5887779 -212149379 + HERVH LTR ERV1 431 2995 -4718 964 127 7 0 chr3 5887758 5887908 -212149250 + HERVH LTR ERV1 3140 3290 -4423 * 1027 136 6 12 chr3 5887898 5888060 -212149098 + HERVH LTR ERV1 3492 3652 -4061 * 4585 59 5 10 chr3 5888052 5888663 -212148495 + HERVH LTR ERV1 7106 7713 0 1704 110 54 156 chr3 5888663 5889162 -212147996 + LTR7 LTR ERV1 1 448 -2 5570 187 3 5 chr3 5889187 5890803 -212146355 - L1P5 LINE L1 -470 5681 4069 1139 231 8 0 chr3 5890791 5891059 -212146099 - L1 LINE L1 -2686 4176 3907 * 12330 130 86 15 chr3 5891057 5892802 -212144356 - L1PBa LINE L1 -3257 3605 1590 2357 87 0 3 chr3 5892802 5893100 -212144058 - AluY SINE Alu -12 299 3 12330 130 86 15 chr3 5893100 5894128 -212143030 - L1PBa LINE L1 -5272 1590 636 1037 159 20 0 chr3 5894130 5894325 -212142833 - L1PBa LINE L1 -6663 200 2 30 27 0 0 chr3 5894428 5894465 -212142693 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr3 5895682 5895704 -212141454 + AT_rich Low_complexity Low_complexity 1 22 0 276 340 60 0 chr3 5895729 5895829 -212141329 + MIR SINE MIR 57 162 -100 2483 69 0 3 chr3 5896142 5896447 -212140711 - AluSg SINE Alu -6 304 1 768 256 67 0 chr3 5897205 5897400 -212139758 + MIR SINE MIR 28 235 -27 224 295 152 0 chr3 5898162 5898267 -212138891 - MIR3 SINE MIR -25 183 63 889 197 57 0 chr3 5898705 5898898 -212138260 - LTR16A1 LTR ERVL 0 457 254 403 344 42 47 chr3 5899125 5899317 -212137841 + MIR SINE MIR 20 210 -52 213 363 24 24 chr3 5899556 5899724 -212137434 - MIR SINE MIR -92 170 3 263 203 14 0 chr3 5900822 5900891 -212136267 + (TATG)n Simple_repeat Simple_repeat 3 72 0 1209 243 42 48 chr3 5903060 5903542 -212133616 - MER39 LTR ERV1 -20 687 1 831 167 0 0 chr3 5903722 5903854 -212133304 + AluSq/x SINE Alu 1 132 -181 2153 122 7 7 chr3 5904853 5905157 -212132001 + AluSx SINE Alu 1 304 -8 213 94 0 0 chr3 5905199 5905231 -212131927 + (TG)n Simple_repeat Simple_repeat 1 32 0 2274 151 0 34 chr3 5905329 5905766 -212131392 - L1MA6 LINE L1 -1 6299 5878 237 209 233 12 chr3 5905767 5905853 -212131305 + MER5A DNA MER1_type 77 181 -8 209 393 14 48 chr3 5905872 5906017 -212131141 + MIR SINE MIR 50 189 -73 353 250 46 46 chr3 5906551 5906659 -212130499 - MIR3 SINE MIR -47 161 54 21 0 0 0 chr3 5906809 5906830 -212130328 + AT_rich Low_complexity Low_complexity 1 21 0 1305 99 42 0 chr3 5907005 5907197 -212129961 + L1PA13 LINE L1 5963 6162 -1 247 111 19 19 chr3 5908625 5908679 -212128479 + (TTTTC)n Simple_repeat Simple_repeat 4 57 0 210 67 67 0 chr3 5908707 5908752 -212128406 + CT-rich Low_complexity Low_complexity 1 48 0 603 236 15 64 chr3 5908806 5909009 -212128149 + L1ME3 LINE L1 5940 6132 -30 601 233 114 52 chr3 5909312 5909539 -212127619 - L1MC4 LINE L1 -1 7873 7662 1592 177 69 0 chr3 5909539 5909827 -212127331 - AluJo SINE Alu -4 308 1 601 233 114 52 chr3 5909827 5909869 -212127289 - L1MC4 LINE L1 -212 7662 7624 1454 198 50 3 chr3 5909869 5910167 -212126991 - AluJb SINE Alu 0 312 1 601 233 114 52 chr3 5910167 5910301 -212126857 - L1MC4 LINE L1 -250 7624 7426 480 258 42 42 chr3 5910572 5910762 -212126396 - L1MC4a LINE L1 -439 7369 7180 525 277 63 29 chr3 5910886 5911021 -212126137 - L1MC4 LINE L1 -1081 6961 6813 203 0 0 36 chr3 5911021 5911049 -212126109 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 525 277 63 29 chr3 5911049 5911151 -212126007 - L1MC4 LINE L1 -1229 6813 6716 322 261 12 0 chr3 5911213 5911307 -212125851 - L1MC4 LINE L1 -1458 6545 6443 421 251 127 59 chr3 5912012 5912490 -212124668 + MER34B LTR ERV1 6 565 0 21 36 0 0 chr3 5912829 5912857 -212124301 + AT_rich Low_complexity Low_complexity 1 28 0 200 83 0 28 chr3 5912907 5912943 -212124215 + (CAT)n Simple_repeat Simple_repeat 2 36 0 276 367 39 8 chr3 5912943 5913071 -212124087 - MIR3 SINE MIR -70 138 7 291 353 0 17 chr3 5913180 5913296 -212123862 + MIR SINE MIR 33 146 -62 26 30 0 0 chr3 5914073 5914106 -212123052 + AT_rich Low_complexity Low_complexity 1 33 0 1153 254 93 95 chr3 5914558 5914842 -212122316 + HAL1b LINE L1 83 366 -982 1396 196 28 35 chr3 5914842 5915127 -212122031 + AluJo SINE Alu 1 283 -19 1153 254 93 95 chr3 5915127 5915292 -212121866 + HAL1b LINE L1 366 530 -818 2475 81 0 3 chr3 5915292 5915600 -212121558 + AluSq SINE Alu 1 307 -6 1153 254 93 95 chr3 5915600 5916418 -212120740 + HAL1b LINE L1 530 1348 0 313 301 49 42 chr3 5917531 5917674 -212119484 - L1MC4 LINE L1 -1340 6702 6559 568 151 0 0 chr3 5917709 5917795 -212119363 + AluJ/FLAM SINE Alu 1 86 -226 1262 249 34 25 chr3 5919014 5919339 -212117819 + MER45C DNA AcHobo 626 953 0 318 266 53 21 chr3 5919339 5919433 -212117725 - MIR SINE MIR -138 124 28 280 100 0 50 chr3 5919655 5919715 -212117443 + (TTCCC)n Simple_repeat Simple_repeat 4 60 0 713 333 17 8 chr3 5921228 5921468 -212115690 - MIR SINE MIR -18 244 3 220 321 44 57 chr3 5921556 5921715 -212115443 - L2 LINE L2 -182 3090 2934 22 0 0 0 chr3 5922253 5922275 -212114883 + AT_rich Low_complexity Low_complexity 1 22 0 2330 291 105 32 chr3 5922275 5923916 -212113242 - L2 LINE L2 0 3313 1266 346 281 31 62 chr3 5923996 5924188 -212112970 + LTR37A LTR ERV1 55 240 -186 284 135 0 0 chr3 5924188 5924240 -212112918 - L1MB8 LINE L1 0 6178 6127 867 199 25 0 chr3 5924243 5924439 -212112719 + LTR37A LTR ERV1 218 418 -8 1723 217 52 46 chr3 5924703 5925205 -212111953 - MLT1D LTR MaLR 0 505 1 1890 150 47 26 chr3 5925949 5926290 -212110868 - MER7A DNA MER2_type 0 346 1 2292 62 0 10 chr3 5927465 5927814 -212109344 - AluY SINE Alu 0 311 1 340 272 99 74 chr3 5928188 5928471 -212108687 - L1ME4a LINE L1 -221 5900 5611 1679 168 30 16 chr3 5928800 5928926 -212108232 + AluJb SINE Alu 1 124 -188 423 0 0 0 chr3 5928926 5928973 -212108185 + (CA)n Simple_repeat Simple_repeat 2 48 0 1679 168 30 16 chr3 5928973 5929150 -212108008 + AluJb SINE Alu 124 308 -4 1551 174 87 0 chr3 5929739 5930004 -212107154 + AluSx SINE Alu 1 288 -24 1319 239 47 60 chr3 5930527 5930593 -212106565 - MLT1C LTR MaLR 0 467 402 1862 174 0 3 chr3 5930593 5930897 -212106261 + AluJb SINE Alu 1 303 -9 1319 239 47 60 chr3 5930897 5931298 -212105860 - MLT1C LTR MaLR -65 402 6 2007 149 10 0 chr3 5931323 5931632 -212105526 - AluSq SINE Alu -1 312 1 249 244 58 35 chr3 5931748 5931834 -212105324 + MER103 DNA DNA 69 156 -10 389 232 125 9 chr3 5932278 5932390 -212104768 - MIR SINE MIR -64 198 74 285 326 0 21 chr3 5933212 5933307 -212103851 + L2 LINE L2 3219 3311 -2 271 231 66 55 chr3 5933512 5933603 -212103555 - L2 LINE L2 -1 3312 3221 23 0 0 0 chr3 5934150 5934173 -212102985 + AT_rich Low_complexity Low_complexity 1 23 0 2352 224 20 27 chr3 5934663 5935225 -212101933 - MER74A LTR ERVL 0 558 1 501 147 151 129 chr3 5935267 5935492 -212101666 + MER106A DNA MER1_type 1 230 -6 237 208 57 0 chr3 5936028 5936081 -212101077 + U6 snRNA snRNA 24 79 -28 408 254 16 8 chr3 5936136 5936262 -212100896 + L1ME2 LINE L1 6038 6164 0 512 310 36 39 chr3 5936507 5936748 -212100410 - MIR SINE MIR 0 262 23 213 341 32 32 chr3 5937657 5937780 -212099378 - L2 LINE L2 -217 3055 2933 1900 250 120 56 chr3 5938173 5938921 -212098237 - MER21B LTR ERV1 -48 815 20 320 235 20 71 chr3 5938922 5939020 -212098138 - MER21B LTR ERV1 -759 104 12 273 373 55 39 chr3 5939673 5939705 -212097453 + MIR3 SINE MIR 1 31 -177 1464 163 22 117 chr3 5939705 5940117 -212097041 + MLT1A2 LTR MaLR 2 374 0 273 373 55 39 chr3 5940117 5940236 -212096922 + MIR3 SINE MIR 31 155 -53 382 237 21 0 chr3 5940284 5940377 -212096781 - MER117 DNA MER1_type -35 162 68 284 0 28 0 chr3 5940994 5941030 -212096128 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 394 267 298 0 chr3 5942286 5942417 -212094741 + MER45A DNA AcHobo 1 170 -8 530 253 222 0 chr3 5944204 5944398 -212092760 - MIR SINE MIR -21 241 5 196 231 0 19 chr3 5944426 5944478 -212092680 - MIR SINE MIR -32 230 180 273 354 0 0 chr3 5944593 5944675 -212092483 + Charlie1 DNA MER1_type 1 82 -2679 27 29 0 0 chr3 5945140 5945174 -212091984 + AT_rich Low_complexity Low_complexity 1 34 0 1925 262 59 23 chr3 5945806 5946378 -212090780 + MLT1E LTR MaLR 1 593 0 26 30 0 0 chr3 5946676 5946709 -212090449 + AT_rich Low_complexity Low_complexity 1 33 0 211 374 84 7 chr3 5949195 5949350 -212087808 - MIR SINE MIR -50 212 46 228 213 0 0 chr3 5949832 5949893 -212087265 + CT-rich Low_complexity Low_complexity 2 62 0 388 266 132 60 chr3 5949942 5950306 -212086852 + L1MCc LINE L1 23 412 -6011 1630 264 89 29 chr3 5950556 5950738 -212086420 + L1MCc LINE L1 828 998 -5632 2120 184 26 26 chr3 5950738 5951162 -212085996 + MSTB LTR MaLR 1 424 -2 1630 264 89 29 chr3 5951162 5951825 -212085333 + L1MCc LINE L1 998 1736 -4894 2350 106 0 0 chr3 5951872 5952174 -212084984 + AluSx SINE Alu 1 302 -10 789 273 28 22 chr3 5952228 5952660 -212084498 + L1MCc LINE L1 2138 2478 -4463 667 276 98 33 chr3 5952651 5953251 -212083907 - L1MC4 LINE L1 -127 7681 7186 * 1685 118 33 0 chr3 5953654 5953899 -212083259 - AluSp SINE Alu -22 291 39 479 325 79 95 chr3 5953920 5954655 -212082503 + L2 LINE L2 2218 2940 -374 1580 176 48 0 chr3 5954828 5955118 -212082040 - AluJb SINE Alu -8 304 1 249 316 89 0 chr3 5955220 5955299 -212081859 + L2 LINE L2 3150 3235 -37 229 257 86 29 chr3 5955301 5955371 -212081787 - L2 LINE L2 -8 3305 3232 419 321 25 6 chr3 5956107 5956266 -212080892 - MIR3 SINE MIR -2 206 45 619 256 45 25 chr3 5956522 5956721 -212080437 + MIR SINE MIR 46 248 -14 351 0 0 0 chr3 5957413 5957452 -212079706 + (CA)n Simple_repeat Simple_repeat 2 40 0 249 274 27 0 chr3 5957623 5957696 -212079462 + MIR SINE MIR 182 256 -6 1728 176 3 0 chr3 5958166 5958455 -212078703 + AluJo SINE Alu 1 290 -22 634 209 130 6 chr3 5958465 5958642 -212078516 + MER20 DNA MER1_type 1 199 -20 434 341 74 9 chr3 5959093 5959310 -212077848 - MIR SINE MIR -14 248 18 2278 113 0 7 chr3 5959809 5960119 -212077039 - AluSx SINE Alu -3 309 2 206 310 43 70 chr3 5960867 5961054 -212076104 + L2 LINE L2 2726 2907 -407 300 254 24 79 chr3 5961338 5961464 -212075694 + MIR SINE MIR 45 163 -99 560 284 126 48 chr3 5961574 5961845 -212075313 + LTR16C LTR ERVL 200 491 0 1976 134 16 3 chr3 5961865 5962172 -212074986 + AluSx SINE Alu 1 311 -1 521 237 44 7 chr3 5962298 5962433 -212074725 + MIR SINE MIR 12 151 -111 217 221 118 0 chr3 5962827 5962895 -212074263 - MIR SINE MIR -140 122 47 207 0 0 0 chr3 5962899 5962922 -212074236 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2975 83 0 2 chr3 5963008 5963405 -212073753 - L1PA8 LINE L1 0 6172 5777 291 290 43 73 chr3 5963706 5963845 -212073313 + MIR SINE MIR 45 180 -28 414 321 81 43 chr3 5964255 5964464 -212072694 + MIR SINE MIR 46 262 0 735 288 113 14 chr3 5965574 5966092 -212071066 - MLT2E LTR ERVL -2 626 25 1597 169 4 22 chr3 5966357 5966635 -212070523 + AluJo SINE Alu 2 274 -38 300 27 0 0 chr3 5968226 5968266 -212068892 + (TG)n Simple_repeat Simple_repeat 1 77 0 300 27 0 0 chr3 5968266 5968303 -212068855 + (TG)n Simple_repeat Simple_repeat 2 38 0 658 201 201 73 chr3 5968520 5968795 -212068363 + MER63D DNA MER1_type 47 376 -685 212 0 0 35 chr3 5968795 5968824 -212068334 + (TA)n Simple_repeat Simple_repeat 1 28 0 658 201 201 73 chr3 5968824 5968891 -212068267 + MER63D DNA MER1_type 376 433 -628 1647 198 68 3 chr3 5968910 5969278 -212067880 + MER63D DNA MER1_type 666 1057 -4 22 35 0 0 chr3 5969382 5969411 -212067747 + AT_rich Low_complexity Low_complexity 1 29 0 194 258 91 45 chr3 5969432 5969498 -212067660 - MER5B DNA MER1_type -2 176 108 1073 242 81 36 chr3 5969503 5969704 -212067454 + L1ME3A LINE L1 5734 5924 -246 216 0 0 0 chr3 5969704 5969728 -212067430 + (TA)n Simple_repeat Simple_repeat 1 24 0 1073 242 81 36 chr3 5969728 5969944 -212067214 + L1ME3A LINE L1 5924 6170 0 2150 115 0 0 chr3 5969954 5970233 -212066925 + AluSg SINE Alu 1 279 -31 444 237 21 0 chr3 5970277 5970374 -212066784 + MER5B DNA MER1_type 77 175 -3 24 77 0 0 chr3 5970417 5970469 -212066689 + AT_rich Low_complexity Low_complexity 1 52 0 1234 160 20 116 chr3 5970508 5970802 -212066356 + Tigger7 DNA MER2_type 2 267 -2220 412 264 0 0 chr3 5970800 5970887 -212066271 + Tigger7 DNA MER2_type 2389 2475 -12 * 296 250 181 0 chr3 5971020 5971092 -212066066 + FLAM_A SINE Alu 33 117 -16 198 167 0 0 chr3 5971102 5971138 -212066020 + (TG)n Simple_repeat Simple_repeat 1 36 0 322 218 33 0 chr3 5971138 5971229 -212065929 + L1MCa LINE L1 1996 6983 -1339 281 188 0 0 chr3 5971259 5971323 -212065835 - L1MC4 LINE L1 -1339 6703 6640 813 217 0 30 chr3 5971329 5971495 -212065663 + FRAM SINE Alu 1 154 -22 6715 105 13 35 chr3 5971522 5972556 -212064602 + L1MA2 LINE L1 5137 6192 -112 1946 127 4 0 chr3 5972556 5972823 -212064335 + AluSx SINE Alu 1 268 -44 392 36 0 18 chr3 5972825 5972880 -212064278 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 6715 105 13 35 chr3 5972880 5973036 -212064122 + L1MA2 LINE L1 6193 6304 0 461 176 22 22 chr3 5973040 5973057 -212064101 + GA-rich Low_complexity Low_complexity 2 18 -119 1682 170 26 13 chr3 5973057 5973363 -212063795 + AluJo SINE Alu 1 310 -2 461 176 22 22 chr3 5973363 5973481 -212063677 + GA-rich Low_complexity Low_complexity 17 137 0 23 0 0 0 chr3 5974570 5974593 -212062565 + AT_rich Low_complexity Low_complexity 1 23 0 825 330 41 39 chr3 5974741 5975280 -212061878 - L2 LINE L2 -2 3311 2772 2350 96 3 0 chr3 5975330 5975642 -212061516 + AluSp SINE Alu 1 313 0 23 54 0 0 chr3 5977327 5977364 -212059794 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr3 5977607 5977631 -212059527 + AT_rich Low_complexity Low_complexity 1 24 0 1944 134 3 3 chr3 5977636 5977962 -212059196 + AluSx SINE Alu 3 328 0 261 277 69 54 chr3 5978361 5978491 -212058667 + L2 LINE L2 3140 3271 -1 264 242 200 11 chr3 5978501 5978596 -212058562 - L2 LINE L2 -1 3312 3200 271 234 404 0 chr3 5978797 5978891 -212058267 - L2 LINE L2 0 3272 3141 1662 220 77 46 chr3 5978897 5979379 -212057779 - MLT1D LTR MaLR -6 499 3 1006 289 86 42 chr3 5980903 5981429 -212055729 + MLT1H LTR MaLR 1 549 0 21 36 0 0 chr3 5981479 5981507 -212055651 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr3 5981615 5981638 -212055520 + AT_rich Low_complexity Low_complexity 1 23 0 29 84 0 0 chr3 5981686 5981757 -212055401 + AT_rich Low_complexity Low_complexity 1 71 0 25 31 0 0 chr3 5982219 5982251 -212054907 + AT_rich Low_complexity Low_complexity 1 32 0 282 287 30 20 chr3 5982745 5982846 -212054312 + MLT1H LTR MaLR 1 102 -447 25 0 0 0 chr3 5982972 5982997 -212054161 + AT_rich Low_complexity Low_complexity 1 25 0 236 222 0 16 chr3 5983279 5983342 -212053816 + (TTTA)n Simple_repeat Simple_repeat 1 62 0 334 377 117 20 chr3 5983677 5984078 -212053080 - L2 LINE L2 -339 2975 2536 199 346 71 50 chr3 5984071 5984253 -212052905 + L2 LINE L2 2628 2813 -501 * 283 298 58 8 chr3 5984423 5984544 -212052614 - MER94 DNA DNA 0 134 8 292 380 29 37 chr3 5984591 5984836 -212052322 + MLT1K LTR MaLR 40 282 -306 1246 314 38 7 chr3 5984899 5985320 -212051838 + MER74C LTR ERVL 10 443 -17 2023 141 3 6 chr3 5985465 5985777 -212051381 - AluSq SINE Alu 0 313 3 496 325 10 25 chr3 5986026 5986229 -212050929 + MIR3 SINE MIR 9 208 0 303 249 44 88 chr3 5986835 5987040 -212050118 + MER46C DNA MER2_type 1 196 -142 266 245 0 43 chr3 5987075 5987169 -212049989 - L1MC4 LINE L1 -1339 6703 6614 1055 220 5 5 chr3 5987264 5987464 -212049694 + MER58A DNA MER1_type 1 200 -24 337 321 9 0 chr3 5989497 5989609 -212047549 - MIR3 SINE MIR -1 207 95 427 300 15 0 chr3 5989901 5990031 -212047127 - MER110 LTR ERV1 0 491 360 2573 149 9 41 chr3 5990045 5990488 -212046670 + MER57B LTR ERV1 1 429 -5 952 251 127 0 chr3 5990495 5990762 -212046396 - MER110 LTR ERV1 -145 346 46 505 267 72 59 chr3 5990816 5991037 -212046121 - MER58A DNA MER1_type 0 224 1 226 210 32 0 chr3 5991195 5991257 -212045901 + (TA)n Simple_repeat Simple_repeat 1 64 0 1762 281 8 58 chr3 5991588 5992223 -212044935 + L3 LINE CR1 795 1397 -180 495 297 24 38 chr3 5992223 5992432 -212044726 + MIR SINE MIR 4 209 -53 267 360 93 0 chr3 5992448 5992587 -212044571 + L3 LINE CR1 1425 1576 -1 391 259 32 138 chr3 5992662 5992909 -212044249 + MER102a DNA MER1_type 92 312 -18 567 306 27 32 chr3 5993093 5993312 -212043846 - MIR SINE MIR -35 227 10 376 277 44 25 chr3 5993504 5993663 -212043495 + MER103 DNA DNA 5 166 0 199 336 64 0 chr3 5993764 5993874 -212043284 + MIR SINE MIR 53 169 -93 2078 105 3 3 chr3 5994077 5994363 -212042795 - AluSx SINE Alu -26 286 1 238 164 16 16 chr3 5994435 5994496 -212042662 + (TATATG)n Simple_repeat Simple_repeat 5 65 0 304 0 87 0 chr3 5995357 5995403 -212041755 + A-rich Low_complexity Low_complexity 2 51 0 182 379 11 0 chr3 5995905 5995992 -212041166 - MIR SINE MIR -155 107 20 732 316 25 8 chr3 5996483 5996720 -212040438 + MIR SINE MIR 22 262 0 614 188 0 0 chr3 5997380 5997515 -212039643 - AluJo SINE Alu 0 318 184 614 217 0 0 chr3 5997515 5997630 -212039528 - AluJo SINE Alu -187 115 1 1302 258 58 8 chr3 5999337 5999713 -212037445 - LTR16C LTR ERVL 0 491 97 326 297 84 19 chr3 6000468 6000623 -212036535 - MIR SINE MIR -74 188 24 236 333 24 0 chr3 6000685 6000769 -212036389 + MER81 DNA DNA 7 92 -22 183 304 10 69 chr3 6001528 6001630 -212035528 + MIR3 SINE MIR 74 169 -39 261 220 57 14 chr3 6003161 6003302 -212033856 + (TA)n Simple_repeat Simple_repeat 1 147 0 375 267 74 93 chr3 6003582 6003852 -212033306 - L2 LINE L2 -6 3307 3043 22 35 0 0 chr3 6003951 6003980 -212033178 + AT_rich Low_complexity Low_complexity 1 29 0 242 298 0 0 chr3 6005271 6005328 -212031830 - L2 LINE L2 -27 3286 3230 1070 146 5 21 chr3 6005578 6005770 -212031388 - L1PB2 LINE L1 -7 6144 5956 766 236 34 39 chr3 6005984 6006192 -212030966 - MER20 DNA MER1_type 0 219 13 3141 228 28 66 chr3 6006193 6007250 -212029908 + L1ME2 LINE L1 3763 4779 -1367 2589 216 31 19 chr3 6007217 6007832 -212029326 + L1MB5 LINE L1 5545 6166 -8 * 378 159 35 7 chr3 6007867 6008012 -212029146 + CT-rich Low_complexity Low_complexity 1 149 0 21 0 0 0 chr3 6008083 6008104 -212029054 + AT_rich Low_complexity Low_complexity 1 21 0 757 301 33 5 chr3 6008161 6008374 -212028784 - MIR SINE MIR -42 220 2 2652 245 126 13 chr3 6009376 6010544 -212026614 + L1ME2 LINE L1 4854 6155 -9 279 0 0 0 chr3 6010916 6010947 -212026211 + (CA)n Simple_repeat Simple_repeat 1 31 0 192 111 0 0 chr3 6011376 6011412 -212025746 + (T)n Simple_repeat Simple_repeat 1 36 0 601 331 79 64 chr3 6012215 6012608 -212024550 - LTR16C LTR ERVL -4 487 89 303 244 74 67 chr3 6012711 6012846 -212024312 - MIR SINE MIR -116 146 11 427 265 128 95 chr3 6013054 6013256 -212023902 - HAL1 LINE L1 -3 2504 2310 2075 128 0 19 chr3 6013256 6013568 -212023590 + AluSx SINE Alu 1 306 -6 427 265 128 95 chr3 6013568 6014229 -212022929 - HAL1 LINE L1 -197 2310 1612 1995 123 0 14 chr3 6014487 6014799 -212022359 - AluSg SINE Alu 0 308 1 313 321 142 37 chr3 6015247 6015409 -212021749 - HAL1 LINE L1 -2101 406 228 197 319 132 42 chr3 6015671 6015815 -212021343 + L2 LINE L2 3116 3272 0 251 325 36 0 chr3 6017198 6017281 -212019877 + L2 LINE L2 3184 3269 -3 2256 204 60 30 chr3 6017503 6018041 -212019117 + MLT2B3 LTR ERVL 1 554 0 1718 237 92 13 chr3 6018181 6018716 -212018442 - MER119 DNA MER1_type 0 583 7 572 328 58 17 chr3 6018725 6018966 -212018192 + MIR SINE MIR 12 262 0 672 252 26 52 chr3 6019139 6019369 -212017789 - MIR SINE MIR -26 236 13 21 57 0 0 chr3 6020353 6020388 -212016770 + AT_rich Low_complexity Low_complexity 1 35 0 1763 205 3 6 chr3 6021697 6022058 -212015100 + MER46B DNA MER2_type 1 235 -1 21 36 0 0 chr3 6022160 6022188 -212014970 + AT_rich Low_complexity Low_complexity 1 28 0 926 208 63 0 chr3 6023067 6023274 -212013884 + MLT2B1 LTR ERVL 1 220 -300 230 162 0 0 chr3 6023311 6023348 -212013810 + MLT2C2 LTR ERVL 426 462 -2 222 37 0 0 chr3 6023719 6023746 -212013412 + (TG)n Simple_repeat Simple_repeat 2 28 0 208 338 27 0 chr3 6024530 6024604 -212012554 - L2 LINE L2 -3 3269 3194 723 298 88 51 chr3 6024990 6025634 -212011524 + L1ME4a LINE L1 5315 5982 -139 226 209 15 15 chr3 6025662 6025729 -212011429 + L1ME4a LINE L1 6052 6118 -3 404 371 9 0 chr3 6026225 6026341 -212010817 + L2 LINE L2 3189 3305 -8 22 56 0 0 chr3 6026347 6026383 -212010775 + AT_rich Low_complexity Low_complexity 1 36 0 1305 62 6 0 chr3 6027221 6027397 -212009761 - AluY SINE Alu -3 308 132 2343 59 3 0 chr3 6027520 6027823 -212009335 - AluY SINE Alu -7 304 1 2257 48 7 0 chr3 6027907 6028199 -212008959 - AluY SINE Alu -16 295 2 234 350 46 53 chr3 6029479 6029762 -212007396 + L1MEd LINE L1 496 776 -5343 25 75 0 0 chr3 6029886 6029939 -212007219 + AT_rich Low_complexity Low_complexity 1 53 0 254 228 60 75 chr3 6030023 6030247 -212006911 + L1MEd LINE L1 1125 1396 -4894 28 0 0 0 chr3 6031166 6031194 -212005964 + AT_rich Low_complexity Low_complexity 1 28 0 2327 56 0 0 chr3 6031194 6031480 -212005678 - AluY SINE Alu -24 287 2 28 0 0 0 chr3 6031572 6031600 -212005558 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr3 6032154 6032182 -212004976 + AT_rich Low_complexity Low_complexity 1 28 0 2327 56 0 0 chr3 6032182 6032468 -212004690 - AluY SINE Alu -24 287 2 28 0 0 0 chr3 6032560 6032588 -212004570 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr3 6032820 6032849 -212004309 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 306 0 0 0 chr3 6032848 6032882 -212004276 + (TG)n Simple_repeat Simple_repeat 1 34 0 23 0 0 0 chr3 6033373 6033396 -212003762 + AT_rich Low_complexity Low_complexity 1 23 0 1269 27 0 0 chr3 6033396 6033545 -212003613 - L1PA3 LINE L1 -5 6150 6002 635 331 20 36 chr3 6033852 6034100 -212003058 - MIR SINE MIR -3 259 16 183 129 0 0 chr3 6034235 6034266 -212002892 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 826 285 92 64 chr3 6035134 6035353 -212001805 + HAL1b LINE L1 112 323 -1025 210 91 0 0 chr3 6035353 6035386 -212001772 + (CA)n Simple_repeat Simple_repeat 2 34 0 826 285 92 64 chr3 6035386 6036141 -212001017 + HAL1b LINE L1 323 1114 -234 2127 90 0 4 chr3 6036142 6036450 -212000708 - AluSc SINE Alu 0 307 1 29 28 0 0 chr3 6036517 6036553 -212000605 + AT_rich Low_complexity Low_complexity 1 36 0 185 170 21 43 chr3 6037033 6037080 -212000078 + MER5C DNA MER1_type 279 324 0 24 0 0 0 chr3 6039933 6039957 -211997201 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr3 6039979 6040007 -211997151 + AT_rich Low_complexity Low_complexity 1 28 0 1956 327 64 1 chr3 6040109 6040856 -211996302 + L2 LINE L2 1331 2124 -1190 995 293 66 7 chr3 6040884 6041307 -211995851 + L1MC4 LINE L1 4440 4887 -1259 1298 239 70 55 chr3 6041338 6041527 -211995631 + L1MC4 LINE L1 4846 5031 -1135 1915 76 29 11 chr3 6041527 6041803 -211995355 + L1PA11 LINE L1 5894 6174 0 1298 239 70 55 chr3 6041803 6042168 -211994990 + L1MC4 LINE L1 5031 5389 -777 1484 201 3 3 chr3 6042168 6042452 -211994706 + AluJb SINE Alu 3 286 -26 203 0 0 36 chr3 6042462 6042490 -211994668 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 1298 239 70 55 chr3 6042490 6043093 -211994065 + L1MC4 LINE L1 5397 6161 -5 568 310 44 31 chr3 6043341 6043570 -211993588 - MIR SINE MIR -2 260 29 267 79 0 0 chr3 6043755 6043793 -211993365 + (CA)n Simple_repeat Simple_repeat 2 39 0 252 0 0 0 chr3 6044273 6044301 -211992857 + (T)n Simple_repeat Simple_repeat 1 28 0 311 238 0 0 chr3 6044443 6044506 -211992652 + MER69 DNA AcHobo 2464 2526 0 327 288 220 11 chr3 6044847 6045038 -211992120 - MIR SINE MIR -19 243 13 680 271 81 44 chr3 6046375 6046670 -211990488 + MLT1H LTR MaLR 1 306 -243 310 277 0 80 chr3 6046704 6046841 -211990317 + MLT1H LTR MaLR 424 549 0 225 284 47 101 chr3 6046866 6047014 -211990144 - LTR16C LTR ERVL 0 491 352 603 145 8 63 chr3 6048428 6048933 -211988225 + (CATATA)n Simple_repeat Simple_repeat 1 477 0 266 125 21 0 chr3 6048935 6048983 -211988175 + (CA)n Simple_repeat Simple_repeat 2 50 0 897 328 77 32 chr3 6048991 6049665 -211987493 - HERVL LTR ERVL -1028 4457 3735 1482 338 58 38 chr3 6049790 6050990 -211986168 - HERVL LTR ERVL -1975 3021 1799 25 0 0 0 chr3 6051605 6051630 -211985528 + AT_rich Low_complexity Low_complexity 1 25 0 574 192 83 0 chr3 6051784 6051904 -211985254 + FLAM_A SINE Alu 4 133 0 347 283 75 12 chr3 6052862 6053035 -211984123 - MER113 DNA MER1_type? -304 217 34 3523 142 39 32 chr3 6053598 6054288 -211982870 + L1MA7 LINE L1 5597 6291 0 22 0 0 0 chr3 6054288 6054310 -211982848 + AT_rich Low_complexity Low_complexity 1 22 0 234 182 55 0 chr3 6054633 6054688 -211982470 + L2 LINE L2 3250 3307 -6 435 335 182 23 chr3 6054746 6055185 -211981973 + L2 LINE L2 2804 3312 -1 411 302 63 6 chr3 6055335 6055494 -211981664 + MLT1F LTR MaLR 1 168 -374 229 218 11 35 chr3 6055901 6055988 -211981170 + (TTTA)n Simple_repeat Simple_repeat 1 85 0 302 291 60 46 chr3 6056050 6056201 -211980957 - MIR SINE MIR -105 157 5 513 361 47 29 chr3 6057308 6057649 -211979509 + LTR16C LTR ERVL 137 483 -8 314 286 24 0 chr3 6057680 6057764 -211979394 - L2 LINE L2 -6 3307 3222 2581 103 16 0 chr3 6057905 6058274 -211978884 - THE1C LTR MaLR 0 375 1 190 352 114 0 chr3 6058765 6058853 -211978305 + L3b LINE CR1 1459 1556 -27 23 33 0 0 chr3 6059040 6059070 -211978088 + AT_rich Low_complexity Low_complexity 1 30 0 376 268 192 27 chr3 6059212 6059436 -211977722 + MIR SINE MIR 2 262 0 756 211 155 0 chr3 6059472 6059666 -211977492 + MER58A DNA MER1_type 1 224 0 374 345 84 20 chr3 6061341 6061831 -211975327 + L1ME LINE L1 5304 5824 -297 716 313 175 18 chr3 6061848 6062305 -211974853 + L2 LINE L2 2102 2630 -684 1461 213 0 11 chr3 6062396 6062682 -211974476 + AluJb SINE Alu 6 288 -24 188 33 0 33 chr3 6062687 6062717 -211974441 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 852 195 6 18 chr3 6062717 6062886 -211974272 + FRAM SINE Alu 1 162 -14 261 83 0 0 chr3 6063109 6063145 -211974013 + (TTTC)n Simple_repeat Simple_repeat 1 36 0 954 267 136 40 chr3 6063243 6063693 -211973465 + MLT1H LTR MaLR 3 495 -54 299 359 31 8 chr3 6063927 6064055 -211973103 + L2 LINE L2 3142 3272 0 292 244 100 91 chr3 6064148 6064378 -211972780 + L1ME3A LINE L1 5785 6016 -154 21 36 0 0 chr3 6064509 6064537 -211972621 + AT_rich Low_complexity Low_complexity 1 28 0 1354 176 114 29 chr3 6064701 6064974 -211972184 + MER1B DNA MER1_type 1 296 -43 2037 331 63 38 chr3 6066884 6068107 -211969051 - L2 LINE L2 -2050 1264 11 241 268 0 18 chr3 6068326 6068382 -211968776 + MIR SINE MIR 47 101 -161 23 0 0 0 chr3 6068427 6068450 -211968708 + AT_rich Low_complexity Low_complexity 1 23 0 199 54 54 36 chr3 6068592 6068648 -211968510 + A-rich Low_complexity Low_complexity 6 62 0 213 190 177 76 chr3 6069205 6069284 -211967874 + L2 LINE L2 3227 3313 0 555 229 179 0 chr3 6069480 6069620 -211967538 + MER5A DNA MER1_type 24 188 -1 185 349 32 16 chr3 6069625 6069688 -211967470 + MIR SINE MIR 13 76 -186 362 89 0 0 chr3 6069688 6069744 -211967414 - AluSp/q SINE Alu -3 300 245 1934 115 0 0 chr3 6069744 6070004 -211967154 - AluSq SINE Alu -33 280 21 427 262 40 24 chr3 6070004 6070130 -211967028 + MIR SINE MIR 61 188 -74 293 336 107 22 chr3 6071133 6071374 -211965784 + L1ME3A LINE L1 4724 4943 -1203 186 43 0 0 chr3 6071374 6071397 -211965761 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 293 336 107 22 chr3 6071397 6071613 -211965545 + L1ME3A LINE L1 4943 5220 -926 1500 265 63 50 chr3 6071660 6072426 -211964732 + L1ME3A LINE L1 5288 6063 -107 427 300 202 5 chr3 6073753 6074120 -211963038 - HAL1 LINE L1 -696 1811 1373 994 205 71 26 chr3 6074531 6074799 -211962359 - MER21B LTR ERV1 -114 749 470 210 143 0 0 chr3 6075373 6075408 -211961750 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 22 35 0 0 chr3 6076238 6076267 -211960891 + AT_rich Low_complexity Low_complexity 1 29 0 290 292 28 0 chr3 6076563 6076635 -211960523 - L2 LINE L2 -3 3269 3196 575 260 201 43 chr3 6076640 6077032 -211960126 - LTR16A1 LTR ERVL -3 454 1 301 281 114 9 chr3 6077639 6077753 -211959405 + L2 LINE L2 3147 3272 0 282 116 0 0 chr3 6077880 6077923 -211959235 + (TA)n Simple_repeat Simple_repeat 2 44 0 2224 74 0 7 chr3 6079639 6079957 -211957201 + AluY SINE Alu 1 316 0 1671 219 115 22 chr3 6080103 6080565 -211956593 - MLT1D LTR MaLR 0 505 1 24 0 0 0 chr3 6080675 6080699 -211956459 + AT_rich Low_complexity Low_complexity 1 24 0 284 267 76 29 chr3 6080974 6081079 -211956079 - MIR SINE MIR -74 188 79 387 0 0 0 chr3 6081139 6081182 -211955976 + (A)n Simple_repeat Simple_repeat 1 43 0 29 28 0 0 chr3 6082159 6082195 -211954963 + AT_rich Low_complexity Low_complexity 1 36 0 377 181 123 48 chr3 6082763 6082924 -211954234 - MER20 DNA MER1_type 0 219 2 245 278 133 0 chr3 6084473 6084563 -211952595 - MIR SINE MIR -51 211 110 6178 95 23 7 chr3 6084683 6086313 -211950845 - L1PA13 LINE L1 -1 6162 4516 299 332 45 10 chr3 6086414 6086616 -211950542 + L1MC4a LINE L1 5677 5885 -1923 1528 211 13 3 chr3 6086623 6086927 -211950231 + 7SLRNA srpRNA srpRNA 1 307 -13 28 61 0 0 chr3 6087119 6087168 -211949990 + AT_rich Low_complexity Low_complexity 1 49 0 285 264 72 64 chr3 6087944 6088069 -211949089 + MLT1K LTR MaLR 282 407 -181 218 105 26 0 chr3 6088201 6088239 -211948919 + (TCTA)n Simple_repeat Simple_repeat 2 40 0 28691 120 76 9 chr3 6088853 6094611 -211942547 + L1PA7 LINE L1 12 6152 -2 21 0 0 0 chr3 6096254 6096275 -211940883 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr3 6096554 6096589 -211940569 + AT_rich Low_complexity Low_complexity 1 35 0 194 324 6 6 chr3 6098540 6098629 -211938529 + MIR SINE MIR 19 108 -100 219 36 0 0 chr3 6098843 6098871 -211938287 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1515 163 0 105 chr3 6099037 6099369 -211937789 + AluJb SINE Alu 1 297 -15 339 303 328 5 chr3 6099850 6100045 -211937113 - MIR SINE MIR -3 259 2 278 340 21 0 chr3 6100158 6100252 -211936906 - MIR SINE MIR -68 140 45 239 319 11 32 chr3 6100754 6100848 -211936310 + MLT1K LTR MaLR 482 573 -15 21 36 0 0 chr3 6102304 6102332 -211934826 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr3 6103397 6103422 -211933736 + AT_rich Low_complexity Low_complexity 1 25 0 2099 270 50 54 chr3 6103524 6104719 -211932439 - HAL1 LINE L1 -148 2359 1169 18728 30 0 0 chr3 6154749 6157022 -211880136 - L1P LINE L1 -840 5306 3034 246 266 31 0 chr3 6158619 6158683 -211878475 - MLT2D LTR ERVL -118 296 231 758 201 85 0 chr3 6162325 6162489 -211874669 - MER5B DNA MER1_type 0 178 1 243 200 50 62 chr3 6162506 6162586 -211874572 - Charlie8 DNA MER1_type 0 2417 2339 359 307 94 40 chr3 6163044 6163246 -211873912 + MIR SINE MIR 49 261 -1 523 233 39 0 chr3 6163648 6163777 -211873381 + MLT1C LTR MaLR 34 167 -300 7086 39 8 3 chr3 6163783 6164832 -211872326 + L1PA4 LINE L1 5139 6155 0 832 241 84 45 chr3 6164832 6165118 -211872040 + MLT1C LTR MaLR 171 467 0 311 183 14 0 chr3 6165642 6165713 -211871445 - L1MDa LINE L1 -4351 2189 2118 2174 203 51 75 chr3 6165817 6166640 -211870518 - L1MDa LINE L1 -4441 2099 1297 2617 255 50 22 chr3 6166655 6167329 -211869829 - L1MDa LINE L1 -5831 709 17 6533 235 32 17 chr3 6167878 6168053 -211869105 - L1PA12 LINE L1 -2789 4795 4624 2754 22 0 0 chr3 6168053 6168364 -211868794 - AluYa5 SINE Alu 0 311 1 6533 235 32 17 chr3 6168364 6171012 -211866146 - L1PA12 LINE L1 -2960 4624 1924 661 303 31 12 chr3 6171024 6171278 -211865880 - L1PA12 LINE L1 -7322 259 1 1634 178 3 28 chr3 6171835 6172121 -211865037 - AluJb SINE Alu -31 281 3 1869 179 42 8 chr3 6172450 6172803 -211864355 - MLT1A1 LTR MaLR 0 365 1 1870 142 64 0 chr3 6173009 6173290 -211863868 + AluSx SINE Alu 1 299 -13 24 32 0 0 chr3 6173439 6173470 -211863688 + AT_rich Low_complexity Low_complexity 1 31 0 228 167 0 0 chr3 6173503 6173551 -211863607 + LTR66 LTR ERVL 392 439 -171 264 122 0 0 chr3 6173553 6173594 -211863564 + (TA)n Simple_repeat Simple_repeat 1 41 0 237 164 164 0 chr3 6173596 6173657 -211863501 + MIR SINE MIR 70 140 -122 230 204 0 0 chr3 6173684 6173728 -211863430 + Tigger2 DNA MER2_type 26 69 -2649 * 2416 148 60 7 chr3 6173715 6174135 -211863023 + Tigger2 DNA MER2_type 2271 2712 -6 226 310 0 0 chr3 6174146 6174204 -211862954 + MIR SINE MIR 156 213 -49 2399 67 3 3 chr3 6174387 6174685 -211862473 - AluY SINE Alu -13 298 1 186 43 0 0 chr3 6174802 6174825 -211862333 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 183 250 0 0 chr3 6175243 6175311 -211861847 + G-rich Low_complexity Low_complexity 1 68 0 338 260 42 21 chr3 6175493 6175589 -211861569 + MLT1L LTR MaLR 297 394 -221 2430 200 34 20 chr3 6175746 6176301 -211860857 - L1MB3 LINE L1 -6 6177 5615 207 419 26 21 chr3 6176644 6176835 -211860323 + L2 LINE L2 2869 3060 -212 1343 293 124 15 chr3 6177005 6177673 -211859485 + L2 LINE L2 1945 2685 -629 777 118 0 0 chr3 6177719 6177829 -211859329 + MSTB1 LTR MaLR 1 110 -322 942 275 83 73 chr3 6177856 6178381 -211858777 + L2 LINE L2 2777 3311 -2 265 333 61 10 chr3 6178378 6178477 -211858681 + L2 LINE L2 3169 3272 0 * 282 287 33 16 chr3 6179076 6179198 -211857960 + CT-rich Low_complexity Low_complexity 3 126 0 279 343 26 82 chr3 6180285 6180553 -211856605 + L3 LINE CR1 1066 1318 -259 336 317 83 22 chr3 6180553 6180733 -211856425 - L2 LINE L2 -5 3308 3118 303 311 120 70 chr3 6180982 6181423 -211855735 - L2 LINE L2 -517 2797 2335 186 301 126 10 chr3 6181561 6181664 -211855494 + L3 LINE CR1 585 699 -878 192 77 0 0 chr3 6182588 6182614 -211854544 + (TG)n Simple_repeat Simple_repeat 1 26 0 231 36 0 0 chr3 6182640 6182668 -211854490 + (TG)n Simple_repeat Simple_repeat 1 28 0 3157 82 9 24 chr3 6182744 6183195 -211853963 - MLT2A1 LTR ERVL 0 444 1 263 297 0 0 chr3 6183640 6183704 -211853454 - MIR SINE MIR -19 243 180 733 277 0 21 chr3 6184198 6184386 -211852772 - MIR SINE MIR -77 185 2 299 206 0 0 chr3 6184864 6184927 -211852231 - MLT1E2 LTR MaLR -16 610 548 435 239 9 18 chr3 6185073 6185186 -211851972 - MLT1E3 LTR MaLR -459 165 54 228 342 0 26 chr3 6187776 6187852 -211849306 + MIR SINE MIR 20 93 -115 458 296 23 8 chr3 6187952 6188084 -211849074 + MIR SINE MIR 127 260 -2 195 368 0 0 chr3 6188307 6188375 -211848783 + L2 LINE L2 3205 3272 0 418 321 93 19 chr3 6188629 6188791 -211848367 + MIR3 SINE MIR 20 193 -15 323 325 84 19 chr3 6188984 6189138 -211848020 + MIR SINE MIR 22 185 -77 185 339 36 36 chr3 6189328 6189440 -211847718 - L2 LINE L2 -3 3310 3199 28 61 0 0 chr3 6189560 6189609 -211847549 + AT_rich Low_complexity Low_complexity 1 49 0 829 307 107 58 chr3 6189744 6190642 -211846516 - L2 LINE L2 0 3313 2375 672 224 153 10 chr3 6190652 6190848 -211846310 - MER58A DNA MER1_type 0 224 1 1069 324 166 14 chr3 6190852 6191575 -211845583 - L2 LINE L2 -947 2367 1535 285 277 0 32 chr3 6191712 6191806 -211845352 - MER63 DNA MER1_type -86 750 34 632 157 0 17 chr3 6191911 6192083 -211845075 + G-rich Low_complexity Low_complexity 1 169 0 1881 155 0 7 chr3 6192416 6192707 -211844451 - AluSg SINE Alu -19 291 3 26 0 0 0 chr3 6193384 6193410 -211843748 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr3 6194070 6194093 -211843065 + AT_rich Low_complexity Low_complexity 1 23 0 383 327 107 58 chr3 6194538 6195125 -211842033 - L2 LINE L2 0 3313 2705 245 211 47 39 chr3 6195151 6195279 -211841879 + (CATATA)n Simple_repeat Simple_repeat 3 131 0 204 323 31 0 chr3 6195811 6195876 -211841282 + L2 LINE L2 3247 3313 0 453 280 40 13 chr3 6196158 6196308 -211840850 + L2 LINE L2 3154 3307 -6 1315 207 28 69 chr3 6196604 6196966 -211840192 - MER82 DNA MER2_type -305 348 2 206 257 46 9 chr3 6196967 6197076 -211840082 + (TA)n Simple_repeat Simple_repeat 2 114 0 339 25 0 0 chr3 6197314 6197354 -211839804 + (TA)n Simple_repeat Simple_repeat 1 40 0 962 77 0 8 chr3 6198278 6198408 -211838750 + L1PA10 LINE L1 6040 6168 0 228 35 0 0 chr3 6198493 6198522 -211838636 + (CA)n Simple_repeat Simple_repeat 2 30 0 2185 121 3 0 chr3 6198699 6199006 -211838152 + AluSx SINE Alu 1 308 -4 1817 119 159 68 chr3 6199218 6199588 -211837570 - MER4A LTR ERV1 0 664 261 638 121 0 10 chr3 6199588 6199687 -211837471 - MER4A LTR ERV1 -566 98 1 805 172 79 16 chr3 6199687 6199984 -211837174 + LTR54B LTR ERV1 54 405 -105 2396 102 83 137 chr3 6199998 6200575 -211836583 - LTR10A LTR ERV1 -63 546 1 581 150 9 9 chr3 6200575 6200688 -211836470 + LTR54 LTR ERV1 394 506 -4 520 296 51 5 chr3 6202538 6202734 -211834424 + L1ME LINE L1 5466 5670 -500 7295 97 15 2 chr3 6202832 6203905 -211833253 + L1P LINE L1 1850 2936 -3210 26 0 0 0 chr3 6204141 6204167 -211832991 + AT_rich Low_complexity Low_complexity 1 26 0 566 236 45 68 chr3 6204261 6204481 -211832677 + MIR SINE MIR 12 226 -36 2194 127 0 7 chr3 6204481 6204789 -211832369 + AluSx SINE Alu 1 306 -6 22 35 0 0 chr3 6205446 6205475 -211831683 + AT_rich Low_complexity Low_complexity 1 29 0 2189 95 3 0 chr3 6206067 6206361 -211830797 + AluSp SINE Alu 1 295 -18 909 93 0 0 chr3 6206363 6206492 -211830666 + (TA)n Simple_repeat Simple_repeat 2 130 0 1176 185 88 55 chr3 6206641 6207004 -211830154 - MER39 LTR ERV1 -25 682 308 246 242 30 61 chr3 6206977 6207076 -211830082 - LTR48B LTR ERV1 -544 100 5 * 219 302 70 12 chr3 6208361 6208447 -211828711 - L2 LINE L2 -458 2856 2766 2384 93 3 0 chr3 6208944 6209254 -211827904 - AluSp SINE Alu -1 312 2 14732 96 4 16 chr3 6209659 6211833 -211825325 + HERVH LTR ERV1 845 2992 -4721 897 142 20 0 chr3 6211819 6211967 -211825191 + HERVH LTR ERV1 3140 3290 -4423 * 3254 113 6 8 chr3 6211957 6212460 -211824698 + HERVH LTR ERV1 3492 3993 -3720 4406 138 0 1 chr3 6212464 6213125 -211824033 + HERVH LTR ERV1 4490 5149 -2564 1363 113 38 0 chr3 6213126 6213338 -211823820 + HERVH LTR ERV1 5600 5819 -1894 * 2342 103 48 13 chr3 6213336 6213715 -211823443 + HERVH LTR ERV1 7322 7713 0 2794 78 92 5 chr3 6213715 6214127 -211823031 + LTR7 LTR ERV1 1 448 -2 308 247 6 137 chr3 6214165 6214347 -211822811 - L1MEd LINE L1 -4481 1648 1491 268 302 70 43 chr3 6214464 6215084 -211822074 - L1MEd LINE L1 -4618 1511 889 504 205 117 23 chr3 6215095 6215266 -211821892 - MER53 DNA DNA -2 187 1 27 73 0 0 chr3 6215303 6215358 -211821800 + AT_rich Low_complexity Low_complexity 1 55 0 1226 235 88 122 chr3 6215452 6216074 -211821084 + MLT1E1 LTR MaLR 3 603 -51 555 243 108 47 chr3 6217228 6217524 -211819634 + HAL1 LINE L1 1251 1564 -943 573 136 17 8 chr3 6217537 6217655 -211819503 + GA-rich Low_complexity Low_complexity 2 120 0 259 304 38 0 chr3 6218650 6218729 -211818429 - L2 LINE L2 -37 3276 3195 2764 99 0 0 chr3 6219197 6219561 -211817597 + THE1B LTR MaLR 1 364 0 2713 87 3 3 chr3 6220209 6220579 -211816579 + L1PA8 LINE L1 5795 6164 -8 210 37 0 0 chr3 6220858 6220885 -211816273 + (CA)n Simple_repeat Simple_repeat 1 27 0 897 194 0 29 chr3 6222214 6222384 -211814774 - FRAM SINE Alu -12 164 1 3259 197 43 64 chr3 6222411 6222918 -211814240 + L1MC3 LINE L1 6893 7374 -411 1096 204 42 4 chr3 6222918 6223178 -211813980 + L1PB4 LINE L1 5887 6156 0 3259 197 43 64 chr3 6223178 6223562 -211813596 + L1MC3 LINE L1 7374 7765 -20 2456 84 3 0 chr3 6223696 6224005 -211813153 - AluSp SINE Alu -3 310 1 2237 104 3 0 chr3 6226516 6226814 -211810344 + AluY SINE Alu 1 299 -12 278 290 161 0 chr3 6227879 6227972 -211809186 + MIR SINE MIR 52 159 -103 904 237 50 80 chr3 6227976 6228352 -211808806 + MLT1C LTR MaLR 1 365 -102 458 241 0 18 chr3 6228695 6228807 -211808351 + MLT1C LTR MaLR 358 467 0 1048 92 7 0 chr3 6229454 6229596 -211807562 + L1P LINE L1 2 144 -6002 1057 30 0 23 chr3 6229602 6229733 -211807425 + L1P1 LINE L1 5517 5644 -511 2297 90 0 0 chr3 6229734 6230022 -211807136 + AluY SINE Alu 10 297 -14 1770 176 115 16 chr3 6230022 6230517 -211806641 - L1M4c LINE L1 -4334 2048 1374 312 27 0 0 chr3 6230529 6230566 -211806592 + (TG)n Simple_repeat Simple_repeat 2 38 0 1993 172 112 84 chr3 6230968 6231614 -211805544 + MER4A LTR ERV1 1 664 0 1604 186 28 34 chr3 6231803 6232130 -211805028 + MER21B LTR ERV1 1 325 -538 1809 238 49 10 chr3 6232191 6232599 -211804559 + MER21B LTR ERV1 425 848 -15 435 321 93 22 chr3 6233456 6233873 -211803285 + L1ME4a LINE L1 5673 6119 -2 255 152 0 0 chr3 6234757 6234803 -211802355 + A-rich Low_complexity Low_complexity 1 46 0 367 328 15 15 chr3 6234935 6235066 -211802092 - L2 LINE L2 0 3313 3183 1185 231 9 47 chr3 6235656 6235976 -211801182 + L1MD2 LINE L1 6023 6330 -29 23 33 0 0 chr3 6237715 6237745 -211799413 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr3 6238047 6238085 -211799073 + AT_rich Low_complexity Low_complexity 1 38 0 2078 92 7 0 chr3 6238690 6238963 -211798195 + AluSc SINE Alu 2 276 -33 180 0 0 0 chr3 6239005 6239025 -211798133 + (GA)n Simple_repeat Simple_repeat 2 21 0 3576 187 29 22 chr3 6239485 6240894 -211796264 + L1MA9 LINE L1 4642 6176 -136 210 37 0 0 chr3 6240894 6240921 -211796237 + (CA)n Simple_repeat Simple_repeat 2 28 0 3576 187 29 22 chr3 6240921 6241059 -211796099 + L1MA9 LINE L1 6176 6312 0 22 0 0 0 chr3 6242370 6242392 -211794766 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr3 6242750 6242787 -211794371 + AT_rich Low_complexity Low_complexity 1 37 0 746 182 127 0 chr3 6243137 6243284 -211793874 - MSTA LTR MaLR -1 427 260 934 175 11 6 chr3 6243284 6243467 -211793691 - LTR2 LTR ERV1 0 449 266 817 180 0 136 chr3 6243524 6243752 -211793406 - Harlequin LTR ERV1 -1 6895 6699 1382 67 5 10 chr3 6244496 6244704 -211792454 + LTR7 LTR ERV1 242 448 -2 512 272 69 6 chr3 6244783 6244956 -211792202 + MER5A DNA MER1_type 4 187 -2 1042 183 0 0 chr3 6245232 6245401 -211791757 + FRAM SINE Alu 1 169 -7 747 248 96 0 chr3 6245427 6245625 -211791533 + MIR SINE MIR 46 262 0 2102 160 77 15 chr3 6245853 6246254 -211790904 - MSTB LTR MaLR 0 426 1 1679 190 0 43 chr3 6246574 6246900 -211790258 - AluJb SINE Alu 0 312 1 2912 208 64 29 chr3 6247775 6248560 -211788598 + L1MC2 LINE L1 5416 6227 -117 3438 169 51 34 chr3 6248990 6249159 -211787999 - L1MA6 LINE L1 -10 7311 7147 2272 168 20 0 chr3 6249159 6249552 -211787606 - MER57A LTR ERV1 0 403 3 2171 120 3 7 chr3 6249555 6249864 -211787294 + AluSx SINE Alu 3 310 -2 3438 169 51 34 chr3 6249864 6250124 -211787034 - L1MA6 LINE L1 -175 7146 6892 2389 115 16 19 chr3 6250124 6250498 -211786660 + THE1C LTR MaLR 3 375 0 3438 169 51 34 chr3 6250498 6250899 -211786259 - L1MA6 LINE L1 -429 6892 6461 * 9749 228 44 28 chr3 6250898 6251463 -211785695 - L1MA6 LINE L1 -1408 5759 5205 189 0 0 0 chr3 6251463 6251484 -211785674 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 9749 228 44 28 chr3 6251484 6255204 -211781954 - L1MA6 LINE L1 -1962 5205 1707 1331 307 58 53 chr3 6255481 6256123 -211781035 - L1MA6 LINE L1 -6144 1024 1 196 307 51 117 chr3 6256262 6256399 -211780759 + MIR3 SINE MIR 30 157 -51 1110 36 0 0 chr3 6256769 6256906 -211780252 - L1PA4 LINE L1 -3 6152 6016 631 275 13 61 chr3 6257285 6257514 -211779644 - MER20 DNA MER1_type -1 218 1 1152 199 55 65 chr3 6257604 6258020 -211779138 - L1MB8 LINE L1 -9 6169 5758 408 289 79 3 chr3 6258122 6258451 -211778707 - L1MEc LINE L1 -3653 2562 2209 301 311 88 51 chr3 6258462 6258513 -211778645 - L1MEc LINE L1 -4159 2237 2189 7072 59 6 1 chr3 6258513 6259612 -211777546 + L1PA8 LINE L1 5070 6172 0 301 311 88 51 chr3 6259612 6259891 -211777267 - L1MEc LINE L1 -4207 2189 1895 2769 92 92 5 chr3 6259893 6260305 -211776853 + LTR7 LTR ERV1 1 448 -2 4411 87 42 5 chr3 6260307 6260971 -211776187 + HERVH LTR ERV1 1 689 -7024 32 26 0 0 chr3 6262082 6262121 -211775037 + AT_rich Low_complexity Low_complexity 1 39 0 663 295 92 4 chr3 6262233 6262494 -211774664 + MLT1F LTR MaLR 1 284 -258 303 193 45 23 chr3 6262488 6262576 -211774582 + MLT1F LTR MaLR 474 563 -4 * 333 269 0 42 chr3 6262661 6262780 -211774378 + MLT1-int LTR MaLR 437 550 -821 1682 64 0 0 chr3 6262992 6263195 -211773963 - AluY SINE Alu -11 300 98 804 211 36 135 chr3 6263245 6263666 -211773492 - MLT1B LTR MaLR -8 382 4 1605 230 44 80 chr3 6263673 6264537 -211772621 - MLT1C-int LTR MaLR -4 1705 557 1073 164 13 4 chr3 6264521 6264784 -211772374 - MLT1C-int LTR MaLR -988 383 1 * 1133 206 124 79 chr3 6264784 6265226 -211771932 - MLT1C LTR MaLR 0 467 6 27 49 0 0 chr3 6265287 6265328 -211771830 + AT_rich Low_complexity Low_complexity 1 41 0 328 304 14 40 chr3 6265370 6265518 -211771640 + L1ME LINE L1 3682 3825 -2321 246 276 71 8 chr3 6265522 6265649 -211771509 - MLT1J LTR MaLR -3 508 374 270 314 20 52 chr3 6265754 6265907 -211771251 - MLT1J LTR MaLR -312 199 52 304 289 60 24 chr3 6266614 6266780 -211770378 + L1ME LINE L1 4545 4716 -1430 8403 38 2 0 chr3 6266827 6267898 -211769260 - L1PA3 LINE L1 -1782 4364 3292 8660 23 0 0 chr3 6267898 6269686 -211767472 + L1PA3 LINE L1 4365 6153 -2 29 47 0 0 chr3 6269944 6269987 -211767171 + AT_rich Low_complexity Low_complexity 1 43 0 254 272 39 39 chr3 6271169 6271272 -211765886 + L1ME LINE L1 5727 5829 -333 1439 286 12 45 chr3 6271498 6272008 -211765150 + L1MA4A LINE L1 1 493 -6356 4231 208 24 35 chr3 6272070 6272851 -211764307 + L1MA4A LINE L1 1168 1935 -4914 2260 114 0 16 chr3 6272851 6273168 -211763990 + AluSx SINE Alu 1 312 0 4231 208 24 35 chr3 6273168 6273465 -211763693 + L1MA4A LINE L1 1935 2234 -4615 4825 141 6 4 chr3 6273508 6274331 -211762827 + L1PA16 LINE L1 5329 6153 -13 9020 180 45 10 chr3 6274355 6275492 -211761666 + L1MA4A LINE L1 3881 4976 -2029 2547 65 0 0 chr3 6275492 6275800 -211761358 + AluY SINE Alu 1 308 -3 9020 180 45 10 chr3 6275800 6276738 -211760420 + L1MA4A LINE L1 4976 5879 -1126 1467 118 5 0 chr3 6276738 6276941 -211760217 + AluSq SINE Alu 101 304 -9 9020 180 45 10 chr3 6276941 6277717 -211759441 + L1MA4A LINE L1 5879 6821 -184 403 177 10 42 chr3 6277718 6277814 -211759344 + L1MA4A LINE L1 6890 6982 -23 249 250 31 0 chr3 6278748 6278812 -211758346 - MLT2D LTR ERVL -118 296 231 237 192 39 0 chr3 6279120 6279172 -211757986 - MLT2D LTR ERVL -130 284 231 324 0 0 0 chr3 6279357 6279393 -211757765 + (GA)n Simple_repeat Simple_repeat 2 37 0 355 348 61 6 chr3 6280566 6280730 -211756428 - L1ME LINE L1 -348 5822 5650 1453 158 9 0 chr3 6281078 6281299 -211755859 - AluSg/x SINE Alu -25 287 65 6729 122 14 53 chr3 6281300 6282212 -211754946 - L1M1 LINE L1 -4670 2895 1949 1889 186 0 3 chr3 6282212 6282519 -211754639 - AluJb SINE Alu -6 306 1 6729 122 14 53 chr3 6282519 6282540 -211754618 - L1M1 LINE L1 -5616 1949 1929 2171 108 4 0 chr3 6282540 6282819 -211754339 - AluSp SINE Alu -33 280 1 6729 122 14 53 chr3 6282819 6283139 -211754019 - L1M1 LINE L1 -5636 1929 1690 823 234 6 33 chr3 6283139 6283496 -211753662 - LTR2 LTR ERV1 0 449 3 801 154 0 0 chr3 6283498 6283634 -211753524 - Harlequin LTR ERV1 0 6896 6761 29339 163 8 19 chr3 6283691 6288998 -211748160 - Harlequin LTR ERV1 -1297 6516 1266 2721 164 30 6 chr3 6288999 6289493 -211747665 - Harlequin LTR ERV1 -6796 1017 512 2095 170 3 13 chr3 6289574 6289962 -211747196 - Harlequin LTR ERV1 -6512 384 1 850 201 5 5 chr3 6289962 6290146 -211747012 - LTR2 LTR ERV1 0 449 266 1186 155 71 8 chr3 6290215 6290454 -211746704 - MSTA LTR MaLR -164 264 11 22 0 0 0 chr3 6291057 6291079 -211746079 + AT_rich Low_complexity Low_complexity 1 22 0 1749 117 79 10 chr3 6291371 6291662 -211745496 + L1PA10 LINE L1 5858 6168 0 3049 211 17 43 chr3 6293538 6293922 -211743236 + L1ME2 LINE L1 4867 5259 -1075 2225 138 8 114 chr3 6293922 6294063 -211743095 - Tigger2a DNA MER2_type -2274 434 280 1367 184 54 22 chr3 6294063 6294340 -211742818 - AluJo SINE Alu -26 286 1 2225 138 8 114 chr3 6294340 6294682 -211742476 - Tigger2a DNA MER2_type -2428 280 2 3049 211 17 43 chr3 6294682 6294929 -211742229 + L1ME2 LINE L1 5259 5511 -823 1707 195 72 60 chr3 6294929 6295426 -211741732 - MLT1D LTR MaLR -2 503 1 3049 211 17 43 chr3 6295426 6296095 -211741063 + L1ME2 LINE L1 5511 6331 -3 21 0 0 0 chr3 6296494 6296515 -211740643 + AT_rich Low_complexity Low_complexity 1 21 0 1207 215 11 21 chr3 6298675 6298954 -211738204 - MLT1C LTR MaLR -6 461 186 711 177 77 86 chr3 6298957 6299177 -211737981 - MLT1C LTR MaLR -249 218 1 214 304 0 0 chr3 6299408 6299464 -211737694 + L2 LINE L2 3217 3272 0 1676 169 177 14 chr3 6299498 6299859 -211737299 + MSTA LTR MaLR 9 428 0 191 185 0 19 chr3 6300908 6300962 -211736196 + (TA)n Simple_repeat Simple_repeat 1 53 0 275 290 45 142 chr3 6301153 6301484 -211735674 + L2 LINE L2 2969 3267 -5 1867 125 3 10 chr3 6302697 6302985 -211734173 - L1PA11 LINE L1 -1 6173 5888 21 0 0 0 chr3 6303188 6303209 -211733949 + AT_rich Low_complexity Low_complexity 1 21 0 1266 251 94 23 chr3 6303248 6304181 -211732977 - L1ME1 LINE L1 -18 6148 5122 6685 135 17 8 chr3 6304226 6305533 -211731625 - L1MA1 LINE L1 -8 6294 4974 2009 141 26 32 chr3 6305549 6305926 -211731232 + THE1C LTR MaLR 1 375 0 8723 132 26 31 chr3 6305952 6307380 -211729778 + THE1C-int LTR MaLR 161 1580 0 1314 158 13 18 chr3 6307380 6307608 -211729550 + THE1C LTR MaLR 1 227 -148 658 130 10 0 chr3 6307610 6307710 -211729448 - LTR28 LTR ERV1 -919 101 1 18109 177 37 12 chr3 6307710 6311107 -211726051 - L1M1 LINE L1 -4077 3488 7 2434 262 56 40 chr3 6311105 6311686 -211725472 - L1ME1 LINE L1 -1080 5066 4496 * 1733 173 52 25 chr3 6311686 6312051 -211725107 - THE1C LTR MaLR 0 375 1 2434 262 56 40 chr3 6312051 6312678 -211724480 - L1ME1 LINE L1 -1650 4496 3839 1048 245 31 0 chr3 6312697 6312750 -211724408 - L1ME1 LINE L1 -3408 2738 2688 448 16 33 0 chr3 6312750 6312811 -211724347 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 1048 245 31 0 chr3 6312811 6313043 -211724115 - L1ME1 LINE L1 -3458 2688 2444 1150 235 93 55 chr3 6313056 6313410 -211723748 + L1ME1 LINE L1 4682 5021 -1145 1926 154 28 25 chr3 6313410 6313773 -211723385 - THE1B LTR MaLR 0 364 1 1150 235 93 55 chr3 6313773 6314448 -211722710 + L1ME1 LINE L1 5021 5735 -431 24321 107 14 2 chr3 6314456 6318924 -211718234 - L1PA7 LINE L1 -4 6465 1963 235 252 7 43 chr3 6318959 6319098 -211718060 + (CACCC)n Simple_repeat Simple_repeat 2 135 0 186 192 0 0 chr3 6319101 6319153 -211718005 + C-rich Low_complexity Low_complexity 1 52 0 11692 126 14 18 chr3 6319257 6321322 -211715836 - L1PA7 LINE L1 -4379 2082 5 1437 241 32 15 chr3 6321330 6321740 -211715418 + L1ME1 LINE L1 5736 6152 -14 198 286 55 22 chr3 6321818 6321909 -211715249 - L2 LINE L2 -534 2780 2687 180 0 0 0 chr3 6322109 6322129 -211715029 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5776 22 1 0 chr3 6322129 6322799 -211714359 - L1PA3 LINE L1 -11 6144 5474 20663 50 51 4 chr3 6322899 6325567 -211711591 - L1P LINE L1 -3352 2794 2 6220 199 34 14 chr3 6325789 6327039 -211710119 - MSTB-int LTR MaLR -375 1276 1 1316 183 29 17 chr3 6327039 6327280 -211709878 - MSTB LTR MaLR 0 426 183 2131 175 51 24 chr3 6327280 6327771 -211709387 - MER75 DNA T2_type 0 514 11 428 172 0 0 chr3 6327753 6327817 -211709341 - MER75 DNA T2_type -443 71 8 * 1008 193 11 16 chr3 6327817 6328004 -211709154 - MSTB LTR MaLR -240 186 1 803 180 22 51 chr3 6328706 6328884 -211708274 + MER58A DNA MER1_type 45 217 -7 21 0 0 0 chr3 6329276 6329297 -211707861 + AT_rich Low_complexity Low_complexity 1 21 0 227 344 150 22 chr3 6329325 6329505 -211707653 + L3 LINE CR1 1374 1576 -1 280 276 200 5 chr3 6329952 6330162 -211706996 - L1ME4a LINE L1 -113 6008 5758 2185 171 55 0 chr3 6331627 6332025 -211705133 + MSTB LTR MaLR 1 420 -6 349 273 116 0 chr3 6332565 6332686 -211704472 + MIR SINE MIR 65 199 -63 185 397 0 0 chr3 6334290 6334358 -211702800 + L2 LINE L2 2794 2861 -453 190 373 15 0 chr3 6335868 6335935 -211701223 + MIR3 SINE MIR 89 156 -52 211 284 54 0 chr3 6335987 6336061 -211701097 - MIR SINE MIR -5 257 180 1322 206 16 38 chr3 6336105 6336420 -211700738 + AluJo SINE Alu 3 310 -2 514 296 22 22 chr3 6336725 6336904 -211700254 - MLT1J LTR MaLR -325 186 8 198 325 98 32 chr3 6336922 6337045 -211700113 - MIR SINE MIR -115 147 17 24 0 0 0 chr3 6337536 6337560 -211699598 + AT_rich Low_complexity Low_complexity 1 24 0 217 117 83 0 chr3 6337989 6338049 -211699109 + (TA)n Simple_repeat Simple_repeat 1 65 0 333 296 110 76 chr3 6338618 6338858 -211698300 - HAL1 LINE L1 -556 1951 1692 904 223 0 0 chr3 6338858 6339033 -211698125 - FAM SINE Alu 0 175 1 333 296 110 76 chr3 6339033 6339174 -211697984 - HAL1 LINE L1 -815 1692 1557 401 315 123 30 chr3 6339181 6339416 -211697742 - HAL1 LINE L1 -1090 1417 1161 1127 235 39 78 chr3 6339839 6340251 -211696907 - MSTD LTR MaLR 0 396 1 1848 152 3 7 chr3 6340548 6340837 -211696321 - AluSx SINE Alu -14 298 11 233 292 0 0 chr3 6340972 6341044 -211696114 + MER116 DNA Mariner 6 77 -3 1604 64 0 0 chr3 6542333 6542520 -211494638 + AluSc SINE Alu 103 289 -20 711 95 52 26 chr3 6542521 6542637 -211494521 - MER30 DNA MER1_type -111 119 1 535 225 113 31 chr3 6542642 6542802 -211494356 - MIR SINE MIR -61 201 29 382 283 5 43 chr3 6542910 6543094 -211494064 + CT-rich Low_complexity Low_complexity 2 178 0 1959 142 14 7 chr3 6543101 6543396 -211493762 - AluJb SINE Alu -15 297 1 385 216 23 23 chr3 6543526 6543614 -211493544 + L2 LINE L2 3221 3308 -5 1842 148 53 0 chr3 6543693 6543977 -211493181 + AluJb SINE Alu 1 299 -13 1334 104 0 0 chr3 6544067 6544240 -211492918 + AluSp SINE Alu 132 304 -9 1848 169 76 56 chr3 6544812 6545262 -211491896 - MLT1D LTR MaLR -46 459 1 206 286 0 0 chr3 6545262 6545311 -211491847 + MIR SINE MIR 159 207 -55 292 323 21 0 chr3 6545500 6545593 -211491565 - MIR3 SINE MIR -6 202 108 250 283 76 0 chr3 6545960 6546052 -211491106 + MLT1K LTR MaLR 210 308 -280 2032 124 9 25 chr3 6546434 6546749 -211490409 - AluSx SINE Alu -2 310 1 239 295 67 0 chr3 6546924 6547029 -211490129 - L1ME4a LINE L1 0 6121 6010 589 338 18 14 chr3 6547087 6547306 -211489852 - MIR SINE MIR -1 261 42 627 219 14 0 chr3 6547442 6547588 -211489570 - L1MA10 LINE L1 -13 6321 6174 2031 137 14 0 chr3 6547589 6547881 -211489277 + AluJo SINE Alu 1 296 -16 478 262 31 50 chr3 6547881 6548124 -211489034 - L1MD2 LINE L1 -139 6027 5788 241 317 156 75 chr3 6548172 6548371 -211488787 + MIR SINE MIR 38 252 -10 406 293 73 44 chr3 6548976 6549181 -211487977 + MIR SINE MIR 31 241 -21 263 93 23 0 chr3 6549240 6549283 -211487875 + (TG)n Simple_repeat Simple_repeat 2 45 0 892 269 129 6 chr3 6549383 6549717 -211487441 + L3 LINE CR1 1161 1535 -42 291 154 0 0 chr3 6549870 6549909 -211487249 + T-rich Low_complexity Low_complexity 1 39 0 1654 110 4 25 chr3 6550915 6551160 -211485998 - AluSq SINE Alu -7 306 67 1251 154 113 58 chr3 6551171 6551464 -211485694 - AluJo SINE Alu -3 309 1 2036 121 0 27 chr3 6551741 6552038 -211485120 - AluSg SINE Alu -21 289 1 274 234 0 0 chr3 6552395 6552459 -211484699 - MIR SINE MIR -132 130 67 198 313 205 0 chr3 6552489 6552572 -211484586 - L2 LINE L2 -18 3254 3155 2399 100 0 0 chr3 6552614 6552915 -211484243 - AluSx SINE Alu -11 301 1 427 118 24 0 chr3 6553515 6553600 -211483558 + CT-rich Low_complexity Low_complexity 2 88 0 1852 172 3 3 chr3 6553763 6554059 -211483099 - AluJb SINE Alu -16 296 1 183 217 0 0 chr3 6554565 6554625 -211482533 + GA-rich Low_complexity Low_complexity 2 61 0 1346 158 63 60 chr3 6554904 6555189 -211481969 + AluJo SINE Alu 23 308 -4 686 159 0 90 chr3 6555668 6555702 -211481456 - MER94 DNA DNA -1 133 98 2239 110 3 13 chr3 6555702 6556001 -211481157 - AluSx SINE Alu -16 296 1 686 159 0 90 chr3 6556001 6556111 -211481047 - MER94 DNA DNA -36 98 2 2229 157 60 35 chr3 6556150 6556602 -211480556 + MLT1C LTR MaLR 5 467 0 2345 107 22 19 chr3 6556725 6557091 -211480067 - L1PA16 LINE L1 0 6166 5800 2215 118 10 0 chr3 6557092 6557388 -211479770 - AluSq SINE Alu -14 299 1 2233 135 0 3 chr3 6557961 6558273 -211478885 + AluSx SINE Alu 1 311 -1 2137 135 0 3 chr3 6558462 6558766 -211478392 + AluSq SINE Alu 1 303 -10 1767 134 0 4 chr3 6558770 6559016 -211478142 + AluSq SINE Alu 1 245 -68 547 111 12 12 chr3 6559117 6559198 -211477960 - AluY SINE Alu -233 85 5 489 260 52 19 chr3 6559208 6559362 -211477796 - MER112 DNA MER1_type -12 248 90 2165 135 0 16 chr3 6559380 6559692 -211477466 - AluSq SINE Alu -6 307 1 267 222 16 0 chr3 6559860 6559923 -211477235 - MER112 DNA MER1_type -187 73 10 424 252 53 8 chr3 6560190 6560321 -211476837 - MER91C DNA MER1_type 0 140 4 413 267 79 43 chr3 6560324 6560493 -211476665 + MIR SINE MIR 8 191 -17 206 302 79 0 chr3 6560459 6560522 -211476636 + L2 LINE L2 3242 3309 -4 * 228 277 12 48 chr3 6560510 6560593 -211476565 + MIR SINE MIR 134 213 -49 218 279 186 31 chr3 6561945 6562074 -211475084 + L2 LINE L2 3163 3311 -2 1881 110 12 95 chr3 6562724 6562786 -211474372 + L1PBa LINE L1 1552 1618 -5245 2256 108 0 29 chr3 6562786 6563100 -211474058 + AluSx SINE Alu 1 305 -7 1881 110 12 95 chr3 6563100 6563447 -211473711 + L1PBa LINE L1 1618 1927 -4936 274 171 157 14 chr3 6563598 6563668 -211473490 + L2 LINE L2 3229 3308 -5 811 213 38 85 chr3 6563773 6563881 -211473277 - MIR SINE MIR -10 252 159 2008 122 40 0 chr3 6563881 6564177 -211472981 + AluSx SINE Alu 1 308 -4 811 213 38 85 chr3 6564177 6564303 -211472855 - MIR SINE MIR -103 159 29 601 326 84 45 chr3 6565011 6565530 -211471628 - L2 LINE L2 -12 3260 2684 222 37 0 0 chr3 6565647 6565674 -211471484 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 2095 126 0 3 chr3 6565674 6565959 -211471199 - AluSx SINE Alu -28 284 1 1451 194 0 68 chr3 6565961 6566285 -211470873 - AluJo SINE Alu -10 302 1 318 163 102 41 chr3 6566587 6566685 -211470473 + MLT1K LTR MaLR 485 588 0 342 0 0 0 chr3 6566768 6566806 -211470352 + (A)n Simple_repeat Simple_repeat 1 38 0 26 30 0 0 chr3 6566818 6566851 -211470307 + AT_rich Low_complexity Low_complexity 1 33 0 265 109 0 0 chr3 6567045 6567091 -211470067 + L1PA6 LINE L1 6109 6154 0 29 0 0 0 chr3 6567120 6567149 -211470009 + AT_rich Low_complexity Low_complexity 1 29 0 373 217 43 7 chr3 6567185 6567323 -211469835 + (TA)n Simple_repeat Simple_repeat 1 143 0 268 324 102 25 chr3 6567330 6567561 -211469597 + L2 LINE L2 2791 3037 -276 225 307 86 57 chr3 6567597 6567737 -211469421 + L2 LINE L2 3168 3311 -2 1956 150 0 25 chr3 6567753 6567933 -211469225 - AluSx SINE Alu 0 312 142 2410 81 3 7 chr3 6567933 6568230 -211468928 - AluSg SINE Alu -13 297 2 1956 150 0 25 chr3 6568230 6568369 -211468789 - AluSx SINE Alu -170 142 1 186 43 0 0 chr3 6568434 6568457 -211468701 + (TA)n Simple_repeat Simple_repeat 1 23 0 1749 153 20 20 chr3 6568457 6568752 -211468406 - AluJb SINE Alu -13 299 5 252 100 0 0 chr3 6568762 6568802 -211468356 + (TG)n Simple_repeat Simple_repeat 1 40 0 1752 181 7 11 chr3 6568802 6568950 -211468208 - AluJo SINE Alu -31 281 133 2441 61 0 52 chr3 6568950 6569276 -211467882 - AluY SINE Alu -2 309 1 1752 181 7 11 chr3 6569276 6569409 -211467749 - AluJo SINE Alu -179 133 1 441 301 58 13 chr3 6569508 6569664 -211467494 + MIR SINE MIR 61 223 -39 343 289 44 61 chr3 6569753 6569933 -211467225 - MIR SINE MIR -41 221 45 1671 179 0 32 chr3 6570137 6570449 -211466709 - AluJo SINE Alu 0 312 11 2198 106 10 0 chr3 6570602 6570894 -211466264 - AluSq SINE Alu -18 295 1 468 0 0 0 chr3 6571235 6571287 -211465871 + (TG)n Simple_repeat Simple_repeat 2 53 0 305 143 0 16 chr3 6571297 6571360 -211465798 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 252 302 0 8 chr3 6571360 6571489 -211465669 - AluSg/x SINE Alu 0 300 173 1919 114 40 11 chr3 6571589 6571861 -211465297 - AluSx SINE Alu -32 280 1 500 177 8 23 chr3 6571874 6572004 -211465154 + CT-rich Low_complexity Low_complexity 1 128 0 2401 99 0 0 chr3 6572004 6572307 -211464851 - AluSx SINE Alu -9 303 1 750 157 0 57 chr3 6572307 6572447 -211464711 - AluJo/FLAM SINE Alu -170 132 1 301 259 61 83 chr3 6572497 6572725 -211464433 + MER102b DNA MER1_type 118 340 -1 579 230 182 7 chr3 6573409 6573557 -211463601 + MER5A DNA MER1_type 1 174 -15 803 172 0 8 chr3 6573571 6573705 -211463453 + FLAM_C SINE Alu 1 133 0 327 65 0 0 chr3 6573705 6573751 -211463407 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 2079 124 16 16 chr3 6573803 6574110 -211463048 + AluSx SINE Alu 1 307 -5 237 163 20 0 chr3 6574151 6574200 -211462958 - Charlie1b DNA MER1_type 0 523 474 2222 117 0 3 chr3 6574222 6574521 -211462637 + AluSx SINE Alu 1 298 -14 48 18 0 0 chr3 6574540 6574595 -211462563 + AT_rich Low_complexity Low_complexity 1 55 0 1552 171 90 22 chr3 6574602 6574970 -211462188 - Charlie1b DNA MER1_type -130 393 1 2216 110 10 0 chr3 6575073 6575372 -211461786 + AluSq SINE Alu 2 303 -10 245 285 17 69 chr3 6575392 6575508 -211461650 + MIR SINE MIR 46 156 -52 2326 66 0 30 chr3 6575513 6575817 -211461341 + AluY SINE Alu 3 297 -14 618 182 0 0 chr3 6576926 6577025 -211460133 - AluJ/FLAM SINE Alu -213 99 1 339 263 150 0 chr3 6577151 6577284 -211459874 - L3 LINE CR1 -153 1424 1272 1479 159 115 30 chr3 6578073 6578343 -211458815 - AluJo SINE Alu -14 298 6 879 230 162 77 chr3 6578347 6578712 -211458446 + MLT1K LTR MaLR 34 429 -159 2287 104 0 10 chr3 6578757 6579065 -211458093 - AluSx SINE Alu -7 305 1 2110 179 35 31 chr3 6579065 6579144 -211458014 - Charlie1 DNA MER1_type -11 2750 2673 2054 153 0 0 chr3 6579144 6579444 -211457714 - AluSx SINE Alu -12 300 1 2110 179 35 31 chr3 6579444 6579906 -211457252 - Charlie1 DNA MER1_type -88 2673 2207 619 250 14 7 chr3 6579902 6580042 -211457116 - Charlie1 DNA MER1_type -2620 141 1 * 593 27 13 0 chr3 6580135 6580210 -211456948 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 1702 175 14 3 chr3 6580210 6580489 -211456669 - AluJb SINE Alu -27 285 1 315 342 46 97 chr3 6580557 6580624 -211456534 - L2 LINE L2 -2 3270 3201 3150 173 39 22 chr3 6580624 6581065 -211456093 + MER6A DNA MER2_type 1 433 -432 2319 86 0 3 chr3 6581065 6581357 -211455801 - AluSc SINE Alu -18 291 1 2321 105 0 0 chr3 6581358 6581654 -211455504 - AluSx SINE Alu -16 296 1 3150 173 39 22 chr3 6581654 6581805 -211455353 + MER6A DNA MER2_type 432 605 0 315 342 46 97 chr3 6581805 6582170 -211454988 - L2 LINE L2 -71 3201 2860 2264 114 3 0 chr3 6582395 6582692 -211454466 + AluSg SINE Alu 3 300 -10 1369 267 30 39 chr3 6582811 6583027 -211454131 - LTR16A LTR ERVL 0 450 238 2209 123 0 0 chr3 6583027 6583320 -211453838 + AluSx SINE Alu 1 293 -19 1369 267 30 39 chr3 6583320 6583538 -211453620 - LTR16A LTR ERVL -212 238 20 253 356 9 0 chr3 6583708 6583823 -211453335 + L2 LINE L2 2828 2943 -370 1402 153 142 54 chr3 6583981 6584334 -211452824 - MLT1B LTR MaLR -6 384 1 374 283 35 0 chr3 6584429 6584542 -211452616 - MIR SINE MIR -14 248 132 1830 150 10 20 chr3 6585162 6585321 -211451837 - AluJo SINE Alu -22 290 134 2225 103 0 63 chr3 6585321 6585652 -211451506 - AluSg SINE Alu 0 310 1 1830 150 10 20 chr3 6585652 6585785 -211451373 - AluJo SINE Alu -178 134 1 389 296 53 59 chr3 6586095 6586264 -211450894 - MER5A DNA MER1_type 0 189 22 1838 157 7 20 chr3 6586963 6587263 -211449895 - AluSx SINE Alu -16 296 1 21 0 0 0 chr3 6588190 6588211 -211448947 + AT_rich Low_complexity Low_complexity 1 21 0 2242 109 3 0 chr3 6588470 6588774 -211448384 + AluSx SINE Alu 1 305 -7 470 239 93 71 chr3 6590108 6590427 -211446731 + Charlie7 DNA MER1_type 314 624 -1988 1820 192 13 0 chr3 6590427 6590735 -211446423 + AluJo SINE Alu 1 312 0 470 239 93 71 chr3 6590735 6590848 -211446310 + Charlie7 DNA MER1_type 624 2583 -29 778 90 0 0 chr3 6590868 6590968 -211446190 + HY3 scRNA scRNA 1 100 -1 36 23 0 0 chr3 6590973 6591016 -211446142 + AT_rich Low_complexity Low_complexity 1 43 0 464 152 0 43 chr3 6591199 6591291 -211445867 + AluJ/FRAM SINE Alu 223 310 -2 878 204 86 73 chr3 6591337 6591514 -211445644 + L1M4 LINE L1 5016 5189 -957 2176 136 13 0 chr3 6591514 6591822 -211445336 + AluSx SINE Alu 1 312 0 878 204 86 73 chr3 6591822 6591993 -211445165 + L1M4 LINE L1 5189 5372 -774 1960 129 3 45 chr3 6591993 6592304 -211444854 + AluSx SINE Alu 4 301 -11 878 204 86 73 chr3 6592304 6592326 -211444832 + L1M4 LINE L1 5372 5392 -754 239 188 83 0 chr3 6592336 6592384 -211444774 - L2 LINE L2 0 3272 3221 237 132 0 0 chr3 6592917 6592955 -211444203 + (TTC)n Simple_repeat Simple_repeat 2 39 0 2065 125 3 27 chr3 6593177 6593474 -211443684 + AluSx SINE Alu 1 290 -22 449 274 37 22 chr3 6593474 6593599 -211443559 + MIR3 SINE MIR 58 187 -21 1831 160 13 53 chr3 6593697 6594015 -211443143 + AluSx SINE Alu 1 305 -7 2254 108 0 0 chr3 6594026 6594333 -211442825 + AluSx SINE Alu 1 307 -5 955 145 0 13 chr3 6594333 6594511 -211442647 + AluSg/x SINE Alu 132 307 0 1318 181 115 0 chr3 6594518 6594806 -211442352 - L1MC2 LINE L1 -22 6322 6002 22 0 0 0 chr3 6594807 6594829 -211442329 + AT_rich Low_complexity Low_complexity 1 22 0 1690 171 4 4 chr3 6594878 6595159 -211441999 - AluJb SINE Alu -31 281 1 1941 118 24 10 chr3 6595399 6595695 -211441463 + AluSx SINE Alu 1 300 -12 1014 146 6 0 chr3 6595991 6596162 -211440996 - AluJ SINE Alu 0 312 141 803 167 0 14 chr3 6596213 6596351 -211440807 - AluJ SINE Alu -175 137 2 363 324 171 0 chr3 6596417 6596587 -211440571 + MIR SINE MIR 52 250 -12 877 212 4 100 chr3 6596808 6597049 -211440109 - MER20 DNA MER1_type 0 219 2 334 191 32 0 chr3 6597168 6597231 -211439927 - MER97b DNA MER1_type? -876 177 113 1767 112 6 74 chr3 6597235 6597380 -211439778 + AluSx SINE Alu 1 115 -197 2160 78 28 0 chr3 6597380 6597664 -211439494 + AluSg SINE Alu 14 305 -5 1767 112 6 74 chr3 6597664 6597830 -211439328 + AluSx SINE Alu 115 291 -21 689 146 9 9 chr3 6597839 6597949 -211439209 + AluJb SINE Alu 2 111 -201 260 109 0 22 chr3 6597965 6598011 -211439147 + (GGA)n Simple_repeat Simple_repeat 2 46 0 345 263 32 0 chr3 6598038 6598133 -211439025 - MER97c DNA MER1_type? -966 124 27 213 227 0 30 chr3 6598143 6598209 -211438949 + CT-rich Low_complexity Low_complexity 4 67 0 787 163 7 22 chr3 6598287 6598422 -211438736 + FLAM_C SINE Alu 1 133 0 2496 135 46 14 chr3 6598457 6598487 -211438671 + MER65A LTR ERV1 1 29 -416 1905 126 0 0 chr3 6598487 6598758 -211438400 + AluSx SINE Alu 1 271 -41 2496 135 46 14 chr3 6598758 6599158 -211438000 + MER65A LTR ERV1 29 445 0 2012 127 13 0 chr3 6599651 6599950 -211437208 - AluSg SINE Alu -7 303 1 1801 128 3 61 chr3 6600005 6600318 -211436840 - AluSp SINE Alu -18 295 1 467 50 0 0 chr3 6600845 6600905 -211436253 - Alu SINE Alu -252 61 2 540 157 112 0 chr3 6600905 6600994 -211436164 + MER30 DNA MER1_type 132 230 0 277 267 0 27 chr3 6601158 6601233 -211435925 - MER94 DNA DNA -61 73 1 418 258 144 6 chr3 6601250 6601417 -211435741 - MER102b DNA MER1_type -49 292 103 230 256 14 145 chr3 6601532 6601739 -211435419 - L2 LINE L2 -92 3180 3001 707 283 0 12 chr3 6601795 6601968 -211435190 - MIR SINE MIR -24 238 68 2050 116 0 0 chr3 6602304 6602588 -211434570 + AluSc SINE Alu 1 284 -25 216 175 175 0 chr3 6602634 6602691 -211434467 - MIR SINE MIR -108 100 34 333 284 129 32 chr3 6603381 6603536 -211433622 - L2 LINE L2 -7 3306 3137 1016 192 23 46 chr3 6603556 6603775 -211433383 - MER20 DNA MER1_type -5 214 1 1563 164 7 14 chr3 6603837 6604123 -211433035 + AluJo SINE Alu 14 297 -15 1040 148 61 13 chr3 6604123 6604353 -211432805 - MER33 DNA MER1_type -24 300 60 336 198 143 11 chr3 6604450 6604541 -211432617 + MER5A DNA MER1_type 4 106 -83 222 224 129 12 chr3 6604688 6604773 -211432385 + MIR SINE MIR 99 193 -69 2041 110 3 0 chr3 6605834 6606124 -211431034 + AluSx SINE Alu 1 291 -21 342 76 0 45 chr3 6606136 6606202 -211430956 + (GGAA)n Simple_repeat Simple_repeat 1 63 0 557 245 182 10 chr3 6606429 6606621 -211430537 + MIR SINE MIR 33 257 -5 336 255 92 10 chr3 6606636 6606734 -211430424 - MIR SINE MIR -155 107 2 275 262 0 0 chr3 6606819 6606880 -211430278 + MLT1K LTR MaLR 5 65 -523 676 260 250 32 chr3 6606900 6607212 -211429946 + MLT1K LTR MaLR 206 585 -3 2138 117 3 0 chr3 6607584 6607892 -211429266 - AluSq SINE Alu -4 309 1 181 200 25 0 chr3 6607969 6608009 -211429149 - L2 LINE L2 -5 3267 3227 2184 153 46 57 chr3 6608652 6608700 -211428458 - L1MB4 LINE L1 0 6180 6133 1599 175 3 3 chr3 6608700 6608985 -211428173 - AluJb SINE Alu -17 295 11 2184 153 46 57 chr3 6608985 6609413 -211427745 - L1MB4 LINE L1 -47 6133 5709 280 231 0 0 chr3 6609595 6609647 -211427511 + 5S rRNA rRNA 1 52 -69 646 208 60 24 chr3 6609911 6610079 -211427079 + MIR SINE MIR 72 245 -17 271 167 111 0 chr3 6610329 6610383 -211426775 + MIR SINE MIR 123 182 -80 1758 149 0 34 chr3 6610518 6610841 -211426317 + AluSx SINE Alu 1 312 0 189 94 0 0 chr3 6610929 6610961 -211426197 + (CAACC)n Simple_repeat Simple_repeat 2 33 0 466 209 0 11 chr3 6611091 6611182 -211425976 - MLT1I LTR MaLR -259 150 61 2626 97 28 14 chr3 6611185 6611546 -211425612 + THE1C LTR MaLR 10 375 0 711 261 96 5 chr3 6611608 6611826 -211425332 - MLT1L LTR MaLR -10 605 368 4731 136 16 6 chr3 6611850 6612554 -211424604 + MER50 LTR ERV1 1 711 -23 1921 136 0 28 chr3 6612604 6612921 -211424237 - AluJb SINE Alu -4 308 1 502 281 75 48 chr3 6612924 6613219 -211423939 - MLT1L LTR MaLR -310 305 3 254 259 111 0 chr3 6613262 6613343 -211423815 - MIR SINE MIR -59 203 114 2060 123 0 3 chr3 6613822 6614123 -211423035 + AluSx SINE Alu 1 300 -12 716 201 0 29 chr3 6614384 6614523 -211422635 + FLAM_C SINE Alu 6 140 -3 457 304 125 18 chr3 6614581 6614805 -211422353 - MIR SINE MIR -12 250 3 333 239 14 34 chr3 6614895 6615001 -211422157 - MIR SINE MIR -92 116 14 480 295 95 20 chr3 6615844 6616044 -211421114 + MIR SINE MIR 47 261 -1 185 108 27 0 chr3 6616343 6616380 -211420778 + (TGG)n Simple_repeat Simple_repeat 3 40 0 649 298 102 80 chr3 6616799 6617239 -211419919 - L2 LINE L2 -9 3263 2814 1873 113 57 0 chr3 6617282 6617565 -211419593 - AluSx SINE Alu -9 303 5 223 316 143 0 chr3 6618022 6618120 -211419038 - L2 LINE L2 -5 3308 3197 578 254 9 111 chr3 6618131 6618252 -211418906 - MIR SINE MIR -48 214 123 1934 133 0 14 chr3 6618252 6618545 -211418613 + AluSx SINE Alu 1 289 -23 578 254 9 111 chr3 6618545 6618640 -211418518 - MIR SINE MIR -139 123 20 818 146 0 8 chr3 6618667 6618790 -211418368 - FLAM_C SINE Alu -16 127 6 1054 267 140 32 chr3 6619293 6619757 -211417401 + MER20B DNA MER1_type 2 515 -268 849 205 21 38 chr3 6619863 6620102 -211417056 + MER20B DNA MER1_type 515 749 -34 2112 104 40 0 chr3 6620105 6620403 -211416755 + AluSx SINE Alu 1 310 -2 326 194 97 0 chr3 6620480 6620552 -211416606 + MER20B DNA MER1_type 207 285 -498 444 111 0 0 chr3 6620568 6620640 -211416518 + Alu SINE Alu 237 308 -2 974 243 46 102 chr3 6620722 6621204 -211415954 - L2 LINE L2 -664 2650 2196 1718 126 0 37 chr3 6621523 6621817 -211415341 + AluJb SINE Alu 12 294 -18 409 185 0 0 chr3 6622195 6622260 -211414898 - AluJ/FLAM SINE Alu -246 66 2 1845 147 3 7 chr3 6622722 6623014 -211414144 - AluJb SINE Alu -21 291 1 189 0 0 0 chr3 6623105 6623126 -211414032 + (A)n Simple_repeat Simple_repeat 1 21 0 6293 94 47 10 chr3 6623585 6624519 -211412639 + LTR5 LTR ERVK 1 969 0 1129 123 6 0 chr3 6625611 6625774 -211411384 - AluJ SINE Alu -14 298 135 201 74 0 0 chr3 6626042 6626069 -211411089 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 252 0 0 0 chr3 6626571 6626599 -211410559 + (TA)n Simple_repeat Simple_repeat 1 28 0 2064 128 0 10 chr3 6626786 6627098 -211410060 - AluSg SINE Alu -1 309 1 1613 169 7 23 chr3 6627101 6627403 -211409755 - AluJb SINE Alu -15 297 1 444 277 98 27 chr3 6627705 6627889 -211409269 + MIR SINE MIR 66 262 0 802 141 8 0 chr3 6627995 6628123 -211409035 - AluJ SINE Alu -173 129 1 1504 106 78 78 chr3 6628203 6628496 -211408662 - AluSx SINE Alu -18 294 2 435 271 21 14 chr3 6629137 6629281 -211407877 - MIR SINE MIR 0 262 118 2284 80 0 7 chr3 6629281 6629581 -211407577 - AluSx SINE Alu -13 299 2 328 209 60 11 chr3 6629593 6629683 -211407475 + MLT1J LTR MaLR 416 615 0 2238 148 50 5 chr3 6629877 6630277 -211406881 - L1MC1 LINE L1 -5 6328 5911 2093 132 0 0 chr3 6630287 6630591 -211406567 - AluSx SINE Alu -8 304 1 860 272 158 14 chr3 6630605 6630973 -211406185 - LTR33 LTR ERVL -52 469 49 1012 167 9 79 chr3 6630980 6631207 -211405951 - AluJo SINE Alu -101 211 1 2029 113 3 3 chr3 6631398 6631690 -211405468 - AluSg SINE Alu -18 292 1 1395 168 40 37 chr3 6632051 6632348 -211404810 - AluJo SINE Alu -14 298 1 697 318 55 4 chr3 6632359 6632595 -211404563 - MIR SINE MIR -2 260 13 27 62 0 0 chr3 6633070 6633118 -211404040 + AT_rich Low_complexity Low_complexity 1 48 0 284 250 261 11 chr3 6633400 6633488 -211403670 - MIR SINE MIR -61 147 38 1192 253 48 24 chr3 6633577 6633913 -211403245 - ERVL LTR ERVL -2323 3441 3098 443 267 0 0 chr3 6633977 6634082 -211403076 + HERVL LTR ERVL 5269 5373 -281 593 181 0 0 chr3 6634083 6634177 -211402981 + AluJb SINE Alu 177 270 -42 2267 92 3 10 chr3 6635256 6635570 -211401588 + AluSp SINE Alu 2 313 0 1022 262 148 10 chr3 6635674 6636098 -211401060 + MLT1J2 LTR MaLR 1 450 0 722 266 28 28 chr3 6636221 6636435 -211400723 + MIR SINE MIR 1 214 -48 713 112 70 2 chr3 6637559 6637702 -211399456 - L1MA5A LINE L1 -2 6301 6143 663 132 18 9 chr3 6637702 6637816 -211399342 - AluSp/q SINE Alu -23 290 176 21 57 0 0 chr3 6640270 6640305 -211396853 + AT_rich Low_complexity Low_complexity 1 35 0 1999 126 7 0 chr3 6640357 6640650 -211396508 - AluSx SINE Alu -17 295 1 26 0 0 0 chr3 6641814 6641840 -211395318 + AT_rich Low_complexity Low_complexity 1 26 0 1698 132 28 28 chr3 6641907 6642196 -211394962 - AluJo SINE Alu -23 289 1 364 300 111 37 chr3 6642200 6642390 -211394768 - L1ME4a LINE L1 -122 5999 5796 289 235 41 20 chr3 6642452 6642550 -211394608 - L1ME4a LINE L1 -466 5655 5556 236 350 12 0 chr3 6642634 6642714 -211394444 - MIR SINE MIR -113 149 69 2150 76 0 10 chr3 6642771 6643060 -211394098 - L1MA1 LINE L1 -1 6301 6016 619 242 124 0 chr3 6643505 6643658 -211393500 + MIR SINE MIR 66 237 -25 183 42 0 0 chr3 6644537 6644561 -211392597 + (A)n Simple_repeat Simple_repeat 1 24 0 186 43 0 0 chr3 6644596 6644619 -211392539 + (TG)n Simple_repeat Simple_repeat 2 24 0 441 0 0 0 chr3 6644692 6644741 -211392417 + (TG)n Simple_repeat Simple_repeat 2 50 0 436 241 20 79 chr3 6646598 6646801 -211390357 - L1MC5 LINE L1 -34 7927 7737 374 298 38 15 chr3 6647911 6648042 -211389116 - MIR SINE MIR -12 250 117 186 227 0 91 chr3 6648720 6648786 -211388372 - L2 LINE L2 -216 3056 2997 193 211 193 0 chr3 6648957 6649014 -211388144 + L2 LINE L2 3204 3271 -1 384 293 173 42 chr3 6649254 6649445 -211387713 + MIR SINE MIR 44 259 -3 311 259 0 0 chr3 6649925 6649983 -211387175 + L2 LINE L2 3215 3272 0 328 85 0 0 chr3 6650530 6650577 -211386581 - L1MB7 LINE L1 -8 6176 6130 537 323 12 6 chr3 6650651 6650818 -211386340 - MER91A DNA MER1_type -27 169 2 455 253 58 93 chr3 6652068 6652215 -211384943 + L1ME3 LINE L1 5946 6084 -78 2074 132 21 6 chr3 6652215 6652548 -211384610 + L1PA13 LINE L1 5826 6163 0 455 253 58 93 chr3 6652548 6652625 -211384533 + L1ME3 LINE L1 6084 6162 0 473 178 0 0 chr3 6653784 6653857 -211383301 - MER2 DNA MER2_type 0 345 273 185 294 39 0 chr3 6653876 6653927 -211383231 - MIR SINE MIR -133 129 77 1112 269 128 39 chr3 6653980 6654506 -211382652 - MLT1H1 LTR MaLR -5 548 1 408 247 33 60 chr3 6656495 6656645 -211380513 + MIR SINE MIR 28 173 -89 764 174 0 0 chr3 6656957 6657078 -211380080 - FLAM_A SINE Alu -11 122 2 31 0 0 0 chr3 6657081 6657112 -211380046 + AT_rich Low_complexity Low_complexity 1 31 0 369 43 0 0 chr3 6657326 6657373 -211379785 - MADE1 DNA Mariner 0 80 34 185 105 0 53 chr3 6657474 6657512 -211379646 + (TTTCC)n Simple_repeat Simple_repeat 5 40 0 2028 91 0 4 chr3 6658136 6658451 -211378707 - AluSx SINE Alu 0 320 7 818 250 18 14 chr3 6658759 6658979 -211378179 + MER58A DNA MER1_type 1 221 -3 792 181 11 27 chr3 6659182 6659533 -211377625 + CT-rich Low_complexity Low_complexity 1 345 0 396 316 100 40 chr3 6659891 6660290 -211376868 + L2 LINE L2 2107 2529 -785 259 341 12 0 chr3 6660347 6660432 -211376726 - MIR SINE MIR -169 93 8 184 222 44 0 chr3 6660479 6660524 -211376634 + L2 LINE L2 2601 2647 -667 216 267 78 43 chr3 6660922 6661038 -211376120 + L2 LINE L2 3150 3269 -3 203 304 11 76 chr3 6661046 6661138 -211376020 + MIR SINE MIR 158 243 -19 371 313 9 0 chr3 6661585 6661700 -211375458 - MIR SINE MIR -92 170 55 412 195 114 57 chr3 6662431 6662554 -211374604 - MIR3 SINE MIR -69 139 10 189 107 0 0 chr3 6665049 6665077 -211372081 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 23 0 0 0 chr3 6666459 6666482 -211370676 + AT_rich Low_complexity Low_complexity 1 23 0 608 233 0 0 chr3 6667004 6667120 -211370038 - FLAM_A SINE Alu -17 116 1 531 282 62 66 chr3 6667138 6667443 -211369715 - L2 LINE L2 -19 3253 2950 240 289 72 40 chr3 6668131 6668283 -211368875 - MIR SINE MIR -34 228 72 189 0 0 0 chr3 6669492 6669513 -211367645 + (T)n Simple_repeat Simple_repeat 1 21 0 815 129 0 0 chr3 6669727 6669851 -211367307 - FLAM_C SINE Alu -9 134 11 2671 83 0 0 chr3 6670647 6670998 -211366160 - L1PA14 LINE L1 0 6161 5811 427 326 7 28 chr3 6671351 6671492 -211365666 - MIR3 SINE MIR -61 147 10 810 241 82 0 chr3 6671875 6672095 -211365063 + MIR SINE MIR 8 245 -17 471 298 7 28 chr3 6673042 6673183 -211363975 + MIR3 SINE MIR 10 147 -61 403 163 12 12 chr3 6673817 6673897 -211363261 + MIR3 SINE MIR 82 161 -47 229 277 11 96 chr3 6674440 6674534 -211362624 + MIR3 SINE MIR 79 167 -41 519 217 32 106 chr3 6674754 6674838 -211362320 - L1ME2 LINE L1 -9 6155 6066 1804 194 77 58 chr3 6674838 6675334 -211361824 - MLT1D LTR MaLR 0 505 1 519 217 32 106 chr3 6675334 6675455 -211361703 - L1ME2 LINE L1 -98 6066 5964 2342 132 71 0 chr3 6675455 6675848 -211361310 - L1PA16 LINE L1 -5 6161 5741 252 186 0 34 chr3 6676493 6676552 -211360606 - FLAM SINE Alu -1 132 76 588 224 109 21 chr3 6676638 6676830 -211360328 - MIR SINE MIR -53 209 1 357 339 0 0 chr3 6676972 6677081 -211360077 - MIR SINE MIR -147 115 7 4086 84 20 32 chr3 6677094 6677691 -211359467 + L1PA10 LINE L1 5576 6165 -3 513 331 118 10 chr3 6678700 6679014 -211358144 - L2 LINE L2 0 3313 2966 705 118 0 0 chr3 6679261 6679371 -211357787 + (TGGA)n Simple_repeat Simple_repeat 1 110 0 207 0 0 0 chr3 6679387 6679410 -211357748 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 918 155 94 75 chr3 6681541 6681754 -211355404 - MER20 DNA MER1_type -2 217 1 262 271 0 0 chr3 6681784 6681843 -211355315 - MIR SINE MIR 0 262 204 1205 168 72 50 chr3 6681867 6682129 -211355029 - AluJo SINE Alu -38 274 7 741 288 14 9 chr3 6682132 6682347 -211354811 - MIR SINE MIR -42 220 5 289 247 39 13 chr3 6682345 6682422 -211354736 + MIR SINE MIR 156 234 -28 * 234 162 0 0 chr3 6682513 6682550 -211354608 - MIR SINE MIR -59 149 113 2005 115 34 0 chr3 6683221 6683517 -211353641 - AluSx SINE Alu -1 311 6 187 209 0 0 chr3 6683778 6683821 -211353337 + L2 LINE L2 3270 3312 -1 358 219 289 0 chr3 6683982 6684096 -211353062 - MIR SINE MIR -108 154 8 256 284 68 0 chr3 6685585 6685659 -211351499 - L2 LINE L2 -186 3086 3008 185 319 0 0 chr3 6687319 6687388 -211349770 - L2 LINE L2 -9 3263 3195 570 279 132 6 chr3 6688486 6688770 -211348388 - L1MC4a LINE L1 -316 5805 5561 2032 99 31 7 chr3 6690400 6690692 -211346466 - AluSg SINE Alu -11 299 1 493 72 14 0 chr3 6694132 6694201 -211342957 + MADE1 DNA Mariner 1 70 -10 441 39 0 0 chr3 6694195 6694247 -211342911 - MADE1 DNA Mariner -27 53 2 * 630 262 126 19 chr3 6694340 6694554 -211342604 + MIR SINE MIR 14 250 -12 392 241 66 99 chr3 6695933 6696026 -211341132 + MIR SINE MIR 52 147 -115 1836 147 3 3 chr3 6696026 6696312 -211340846 + AluJb SINE Alu 4 289 -23 392 241 66 99 chr3 6696312 6696430 -211340728 + MIR SINE MIR 147 256 -6 300 230 40 14 chr3 6696757 6696831 -211340327 + MER117 DNA MER1_type 44 119 -78 366 302 82 80 chr3 6698322 6698886 -211338272 - L2 LINE L2 0 3272 2702 22 0 0 0 chr3 6698889 6698911 -211338247 + AT_rich Low_complexity Low_complexity 1 22 0 1977 106 10 51 chr3 6698921 6699232 -211337926 + AluSx SINE Alu 1 298 -14 343 250 92 58 chr3 6699479 6699599 -211337559 - MIR SINE MIR -114 148 25 378 327 31 25 chr3 6699983 6700142 -211337016 - MIR3 SINE MIR -13 195 36 751 237 72 10 chr3 6701307 6701501 -211335657 - MER3 DNA MER1_type -1 208 3 701 117 0 0 chr3 6701585 6701688 -211335470 + AluSg/x SINE Alu 208 310 -2 23 0 0 0 chr3 6701712 6701735 -211335423 + AT_rich Low_complexity Low_complexity 1 23 0 1862 123 6 43 chr3 6701735 6702059 -211335099 + AluSx SINE Alu 1 312 0 2225 110 0 0 chr3 6703930 6704240 -211332918 - AluSg SINE Alu 0 310 1 277 263 140 9 chr3 6704535 6704649 -211332509 + MIR3 SINE MIR 37 165 -43 2015 146 33 9 chr3 6705605 6705934 -211331224 - MER1B DNA MER1_type 0 337 1 1809 190 103 38 chr3 6706197 6706671 -211330487 - MLT1D LTR MaLR 0 505 1 2238 203 67 54 chr3 6706680 6707236 -211329922 - MLT1F1 LTR MaLR -4 563 1 285 216 135 0 chr3 6707726 6707800 -211329358 - L1MC5 LINE L1 -70 7891 7808 303 215 114 25 chr3 6708078 6708157 -211329001 + MIR3 SINE MIR 114 199 -9 491 329 7 0 chr3 6709758 6709895 -211327263 - MIR3 SINE MIR -41 167 30 223 309 0 37 chr3 6711046 6711127 -211326031 + MIR SINE MIR 31 108 -100 716 186 127 56 chr3 6711991 6712330 -211324828 - L1MC5 LINE L1 -34 7927 7565 3565 199 36 26 chr3 6712480 6713411 -211323747 + L1ME1 LINE L1 5196 6134 -32 233 304 180 12 chr3 6713412 6713550 -211323608 + MIR SINE MIR 7 164 -44 337 305 108 89 chr3 6714316 6714585 -211322573 - L2 LINE L2 -85 3187 2914 1946 141 0 20 chr3 6715804 6716131 -211321027 + AluSx SINE Alu 1 312 0 537 252 41 0 chr3 6716412 6716559 -211320599 + MER103 DNA DNA 2 154 -12 216 227 0 30 chr3 6716820 6716863 -211320295 + GA-rich Low_complexity Low_complexity 3 45 -21 1814 143 10 22 chr3 6716863 6717177 -211319981 + AluSx SINE Alu 1 310 -2 216 227 0 30 chr3 6717177 6717199 -211319959 + GA-rich Low_complexity Low_complexity 45 66 0 1707 142 184 6 chr3 6717267 6717626 -211319532 - MSTA LTR MaLR -2 426 4 2043 106 3 13 chr3 6718192 6718494 -211318664 - AluSx SINE Alu -13 299 1 898 289 100 22 chr3 6719388 6719797 -211317361 - MLT1K LTR MaLR -4 584 144 423 288 42 8 chr3 6721738 6721856 -211315302 + MIR SINE MIR 101 222 -40 263 247 56 34 chr3 6722382 6722471 -211314687 - L2 LINE L2 -29 3243 3153 487 262 48 12 chr3 6722530 6722701 -211314457 - MIR SINE MIR -69 139 10 820 335 67 23 chr3 6723268 6723743 -211313415 + L1ME4a LINE L1 5319 5814 -307 342 184 87 0 chr3 6723879 6723982 -211313176 + L1ME4a LINE L1 6008 6119 -2 517 269 60 7 chr3 6724366 6724515 -211312643 - MIR3 SINE MIR -15 193 37 524 251 134 67 chr3 6724917 6725140 -211312018 - MIR SINE MIR -1 261 24 384 273 132 57 chr3 6726022 6726249 -211310909 + L1ME LINE L1 5547 5790 -331 1708 171 10 3 chr3 6726362 6726660 -211310498 - AluJo SINE Alu -12 300 1 240 304 14 0 chr3 6727745 6727814 -211309344 - L2 LINE L2 -8 3264 3195 298 308 183 23 chr3 6727970 6728233 -211308925 - L2 LINE L2 -349 2965 2661 510 307 42 16 chr3 6729743 6729932 -211307226 + MIR SINE MIR 47 240 -22 4127 185 127 155 chr3 6730194 6730308 -211306850 - L1MC4 LINE L1 0 8042 7926 279 0 0 0 chr3 6730308 6730339 -211306819 + (CA)n Simple_repeat Simple_repeat 2 32 0 4127 185 127 155 chr3 6730339 6730772 -211306386 - L1MC4 LINE L1 -116 7926 7482 1348 159 4 17 chr3 6730772 6731011 -211306147 - AluSq SINE Alu -77 236 1 4127 185 127 155 chr3 6731011 6731977 -211305181 - L1MC4 LINE L1 -560 7482 6340 314 317 169 6 chr3 6732066 6732249 -211304909 - MIR SINE MIR -49 213 1 510 250 147 6 chr3 6733671 6733827 -211303331 - MER5A DNA MER1_type -3 186 9 321 260 114 16 chr3 6734195 6734318 -211302840 - MIR SINE MIR -113 149 15 306 230 135 48 chr3 6735778 6735904 -211301254 + MER117 DNA MER1_type 1 137 -60 282 282 19 19 chr3 6736349 6736452 -211300706 + MIR SINE MIR 36 138 -70 2132 141 34 44 chr3 6737698 6738109 -211299049 + L1MA4A LINE L1 5715 6121 -182 508 209 0 0 chr3 6738099 6738212 -211298946 + L1MA4A LINE L1 6044 6279 0 * 536 297 60 6 chr3 6738602 6738784 -211298374 - MIR SINE MIR -49 213 22 331 324 19 9 chr3 6741900 6742005 -211295153 + MIR3 SINE MIR 89 194 -14 182 219 0 0 chr3 6743429 6743461 -211293697 - MIR SINE MIR -72 190 159 1580 193 38 41 chr3 6743840 6744233 -211292925 - L1MC2 LINE L1 -5 6339 5948 2248 90 0 28 chr3 6744277 6744598 -211292560 - AluSx SINE Alu 0 312 1 357 132 0 0 chr3 6745415 6745454 -211291704 + (TC)n Simple_repeat Simple_repeat 1 42 -26 210 37 0 0 chr3 6745454 6745481 -211291677 + (CA)n Simple_repeat Simple_repeat 1 27 0 357 132 0 0 chr3 6745481 6745509 -211291649 + (TC)n Simple_repeat Simple_repeat 41 68 0 1478 118 113 17 chr3 6746730 6746968 -211290190 + AluSx SINE Alu 33 293 -19 279 333 42 33 chr3 6747353 6747473 -211289685 + L2 LINE L2 3151 3271 -1 1689 174 14 3 chr3 6748221 6748515 -211288643 - AluJo SINE Alu -15 297 1 205 267 0 0 chr3 6748542 6748587 -211288571 + L2 LINE L2 3182 3226 -87 182 245 20 0 chr3 6748626 6748675 -211288483 + L2 LINE L2 3204 3253 -60 665 225 116 0 chr3 6749673 6749846 -211287312 + MER58A DNA MER1_type 30 222 -2 1454 116 39 27 chr3 6750508 6750766 -211286392 + L1MB3 LINE L1 5923 6183 0 216 0 0 0 chr3 6751058 6751082 -211286076 + (T)n Simple_repeat Simple_repeat 1 24 0 413 303 8 16 chr3 6751725 6751847 -211285311 - L2 LINE L2 -1 3271 3151 2365 91 3 0 chr3 6753369 6753666 -211283492 + AluSp SINE Alu 2 299 -14 207 300 14 43 chr3 6753687 6753757 -211283401 - MIR3 SINE MIR -33 175 108 261 0 0 0 chr3 6754352 6754381 -211282777 + (T)n Simple_repeat Simple_repeat 1 29 0 440 302 37 135 chr3 6755782 6756130 -211281028 - L2 LINE L2 -1 3271 2958 2036 123 38 0 chr3 6756686 6756979 -211280179 - AluSx SINE Alu -8 304 1 189 0 0 0 chr3 6757397 6757418 -211279740 + (T)n Simple_repeat Simple_repeat 1 21 0 1014 174 56 0 chr3 6757753 6757931 -211279227 + MER5A DNA MER1_type 1 188 -1 1708 163 23 23 chr3 6758446 6758747 -211278411 - AluJb SINE Alu -11 301 1 282 279 123 0 chr3 6759328 6759450 -211277708 - MIR SINE MIR -27 235 99 23 0 0 0 chr3 6761787 6761810 -211275348 + AT_rich Low_complexity Low_complexity 1 23 0 274 185 46 46 chr3 6764156 6764221 -211272937 - MIR SINE MIR -63 145 81 262 397 64 14 chr3 6765722 6765941 -211271217 + MIR SINE MIR 2 231 -31 2146 148 0 0 chr3 6766287 6766590 -211270568 + AluSx SINE Alu 1 303 -9 3917 144 29 64 chr3 6766826 6766996 -211270162 + LTR39 LTR ERV1 1 175 -608 1709 141 57 4 chr3 6766996 6767338 -211269820 + AluJb SINE Alu 7 362 0 3917 144 29 64 chr3 6767338 6767967 -211269191 + LTR39 LTR ERV1 175 773 -10 201 305 51 76 chr3 6768560 6768612 -211268546 - MIR SINE MIR -58 150 98 2346 105 3 6 chr3 6768612 6768925 -211268233 + AluSp SINE Alu 1 312 -1 201 305 51 76 chr3 6768925 6768990 -211268168 - MIR SINE MIR -110 98 36 2505 134 38 14 chr3 6769924 6770342 -211266816 + MSTA LTR MaLR 1 428 0 780 229 62 5 chr3 6770342 6770617 -211266541 + L1MC/D LINE L1 5520 5810 -372 1647 149 41 17 chr3 6770880 6771324 -211265834 - MLT1D LTR MaLR 0 505 1 249 33 0 0 chr3 6771587 6771617 -211265541 + (CA)n Simple_repeat Simple_repeat 2 31 0 271 138 52 17 chr3 6771842 6771900 -211265258 - L1M LINE L1 -797 5369 5310 502 140 82 148 chr3 6771974 6772092 -211265066 - L1M4 LINE L1 -871 5275 5182 826 154 23 0 chr3 6772092 6772222 -211264936 - FLAM_C SINE Alu 0 133 1 502 140 82 148 chr3 6772222 6772360 -211264798 - L1M4 LINE L1 -964 5182 5036 845 184 0 26 chr3 6772360 6772550 -211264608 + MER3 DNA MER1_type 1 185 -24 998 205 19 19 chr3 6772567 6772835 -211264323 - L1M4 LINE L1 -1103 5043 4776 743 208 0 0 chr3 6772842 6772991 -211264167 + L1MB1 LINE L1 4843 4991 -1155 658 157 0 5 chr3 6772991 6773153 -211264005 + AluJo SINE Alu 84 310 -2 4504 147 26 57 chr3 6773155 6773513 -211263645 + L1MB1 LINE L1 4980 5347 -821 1892 164 0 16 chr3 6773513 6773818 -211263340 + AluJb SINE Alu 4 303 -9 4504 147 26 57 chr3 6773818 6774642 -211262516 + L1MB1 LINE L1 5347 6145 -23 7205 228 82 23 chr3 6774668 6775183 -211261975 - L1M4 LINE L1 -1379 4767 4283 2224 73 0 0 chr3 6775183 6775456 -211261702 - AluY SINE Alu -38 273 1 7205 228 82 23 chr3 6775456 6776088 -211261070 - L1M4 LINE L1 -1863 4283 3689 1703 180 3 40 chr3 6776088 6776410 -211260748 - AluJo SINE Alu -2 310 1 7205 228 82 23 chr3 6776410 6777700 -211259458 - L1M4 LINE L1 -2457 3689 2187 679 307 55 71 chr3 6777958 6778411 -211258747 + L2 LINE L2 2224 2669 -645 342 320 76 100 chr3 6778448 6778857 -211258301 + L2 LINE L2 2812 3210 -62 1360 131 57 4 chr3 6779733 6779977 -211257181 - Tigger2 DNA MER2_type 0 2718 2462 3827 108 49 88 chr3 6780020 6780794 -211256364 - Tigger2 DNA MER2_type -1974 744 1 394 259 86 123 chr3 6782675 6783080 -211254078 + L1M2 LINE L1 740 1129 -5720 2142 114 10 0 chr3 6783521 6783818 -211253340 - AluSx SINE Alu -12 300 1 1840 154 3 28 chr3 6783843 6784162 -211252996 - AluJo SINE Alu -1 311 1 2075 135 3 0 chr3 6785003 6785300 -211251858 - AluSx SINE Alu -14 298 1 282 326 122 7 chr3 6786357 6786504 -211250654 - MIR3 SINE MIR -21 187 24 329 241 169 42 chr3 6786590 6786756 -211250402 + MLT1H1 LTR MaLR 49 235 -320 1373 80 6 6 chr3 6786760 6786936 -211250222 + AluSp SINE Alu 1 176 -137 207 0 0 0 chr3 6786940 6786963 -211250195 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2301 115 0 0 chr3 6787057 6787369 -211249789 - AluSx SINE Alu 0 312 1 267 196 0 0 chr3 6787379 6787430 -211249728 + MLT1H1 LTR MaLR 430 480 -75 832 243 111 98 chr3 6787707 6787775 -211249383 - MLT1G1 LTR MaLR 0 595 529 733 124 83 0 chr3 6787775 6787896 -211249262 - FLAM_C SINE Alu -2 131 1 832 243 111 98 chr3 6787896 6788411 -211248747 - MLT1G1 LTR MaLR -66 529 4 233 263 38 100 chr3 6790516 6790676 -211246482 + MIR SINE MIR 100 249 -13 * 442 273 180 3 chr3 6790658 6790831 -211246327 - MIR SINE MIR -49 213 19 2300 77 0 0 chr3 6790951 6791224 -211245934 + AluSc SINE Alu 25 297 -12 5276 29 0 0 chr3 6792002 6792615 -211244543 + L1PA3 LINE L1 5540 6152 -3 613 117 19 19 chr3 6792922 6793025 -211244133 - U13 snRNA snRNA -1 103 1 2229 122 0 0 chr3 6793455 6793750 -211243408 + AluSx SINE Alu 1 295 -17 216 0 0 0 chr3 6793948 6793972 -211243186 + (A)n Simple_repeat Simple_repeat 1 24 0 651 90 34 0 chr3 6794367 6794456 -211242702 - FLAM_C SINE Alu -26 117 26 356 317 96 72 chr3 6796208 6796709 -211240449 + L1MC4a LINE L1 4810 5322 -824 1072 228 153 50 chr3 6796740 6797197 -211239961 + L1MC4a LINE L1 5437 5940 -1868 1820 175 6 19 chr3 6797295 6797609 -211239549 + AluJb SINE Alu 1 310 -2 273 253 82 123 chr3 6798532 6798678 -211238480 + L2 LINE L2 3133 3272 0 297 140 40 0 chr3 6800203 6800253 -211236905 + FLAM SINE Alu 78 129 -4 207 383 103 3 chr3 6800555 6800845 -211236313 + L2 LINE L2 2331 2649 -665 1891 149 20 0 chr3 6800869 6801165 -211235993 - AluJb SINE Alu -10 302 1 225 350 137 38 chr3 6801384 6801698 -211235460 + L2 LINE L2 2928 3272 0 27 62 0 0 chr3 6802033 6802081 -211235077 + AT_rich Low_complexity Low_complexity 1 48 0 1589 187 32 18 chr3 6802261 6802539 -211234619 + AluJo SINE Alu 1 282 -30 398 270 22 58 chr3 6802556 6802693 -211234465 - MER5A DNA MER1_type -49 140 9 208 234 0 43 chr3 6802688 6802735 -211234423 - L3 LINE CR1 -17 1560 1516 * 283 274 53 32 chr3 6802737 6802832 -211234326 + MER5A DNA MER1_type 74 170 -19 194 311 66 57 chr3 6802738 6802860 -211234298 - MER5A DNA MER1_type -63 126 4 * 2518 211 29 49 chr3 6802942 6803491 -211233667 + MLT1F LTR MaLR 5 542 0 587 288 27 68 chr3 6804871 6805053 -211232105 + MIR SINE MIR 14 187 -75 2174 111 16 7 chr3 6805053 6805360 -211231798 + AluSx SINE Alu 1 310 -2 587 288 27 68 chr3 6805360 6805399 -211231759 + MIR SINE MIR 187 226 -36 813 170 0 15 chr3 6806230 6806365 -211230793 + FLAM_C SINE Alu 1 133 0 483 281 98 41 chr3 6806700 6807188 -211229970 + L1M4 LINE L1 4487 5002 -1144 1866 117 38 0 chr3 6807308 6807574 -211229584 + AluSq SINE Alu 1 276 -37 5862 89 11 39 chr3 6807619 6808497 -211228661 + L1PA14 LINE L1 5308 6161 0 573 189 53 95 chr3 6808678 6808703 -211228455 + MER58B DNA MER1_type 180 204 -2216 2069 142 0 13 chr3 6808703 6809012 -211228146 + AluSx SINE Alu 2 306 -6 573 189 53 95 chr3 6809012 6809155 -211228003 + MER58B DNA MER1_type 204 341 0 1393 242 79 12 chr3 6809196 6809673 -211227485 + MLT1E LTR MaLR 55 593 0 1926 120 11 14 chr3 6809789 6810152 -211227006 + AluSx SINE Alu 2 363 0 622 252 68 68 chr3 6810199 6810427 -211226731 + MLT1L LTR MaLR 327 557 -58 917 229 88 5 chr3 6810427 6810632 -211226526 + MER58A DNA MER1_type 2 223 -1 622 252 68 68 chr3 6810632 6810681 -211226477 + MLT1L LTR MaLR 556 604 -11 2009 171 16 30 chr3 6810751 6811119 -211226039 - MLT1A1 LTR MaLR -2 363 1 1801 205 123 30 chr3 6811146 6811643 -211225515 - L1ME3A LINE L1 -10 6160 5618 2275 102 0 3 chr3 6811755 6812050 -211225108 + AluSx SINE Alu 1 294 -18 1920 140 48 0 chr3 6812059 6812352 -211224806 + AluSx SINE Alu 1 307 -5 210 143 0 0 chr3 6812352 6812387 -211224771 + (GA)n Simple_repeat Simple_repeat 1 35 0 288 111 0 0 chr3 6813281 6813326 -211223832 + (GA)n Simple_repeat Simple_repeat 2 46 0 439 280 21 21 chr3 6814029 6814172 -211222986 - MIR SINE MIR -82 180 38 618 163 162 23 chr3 6814919 6815078 -211222080 - MER58C DNA MER1_type 0 215 31 1705 136 41 14 chr3 6815480 6815774 -211221384 - AluJb SINE Alu -10 302 1 2191 93 21 0 chr3 6815932 6816212 -211220946 + AluSc SINE Alu 8 293 -16 1196 164 0 29 chr3 6816957 6817165 -211219993 + AluJo SINE Alu 83 284 -28 441 0 0 0 chr3 6817169 6817218 -211219940 + (GA)n Simple_repeat Simple_repeat 2 50 0 29 60 0 0 chr3 6817242 6817292 -211219866 + AT_rich Low_complexity Low_complexity 1 50 0 313 149 27 54 chr3 6817647 6817721 -211219437 - MER116 DNA Mariner 0 80 9 630 214 0 0 chr3 6818026 6818129 -211219029 - FLAM_A SINE Alu -36 106 4 343 259 37 44 chr3 6818217 6818236 -211218922 - MIR SINE MIR 0 262 244 1294 160 173 30 chr3 6818236 6818536 -211218622 + MER2 DNA MER2_type 2 344 0 343 259 37 44 chr3 6818536 6818651 -211218507 - MIR SINE MIR -18 244 129 233 296 68 0 chr3 6818887 6818975 -211218183 + MIR SINE MIR 84 177 -85 1880 170 0 3 chr3 6820020 6820331 -211216827 + AluJb SINE Alu 1 310 -2 254 288 0 0 chr3 6821098 6821164 -211215994 + (TA)n Simple_repeat Simple_repeat 1 66 0 1721 169 10 23 chr3 6821177 6821485 -211215673 - AluJo SINE Alu -8 304 1 214 313 40 30 chr3 6822348 6822447 -211214711 - MIR SINE MIR -64 144 45 472 291 86 29 chr3 6822959 6823134 -211214024 + MIR3 SINE MIR 16 200 -8 282 287 21 11 chr3 6823389 6823483 -211213675 - MLT1K LTR MaLR -36 552 458 257 270 108 0 chr3 6823628 6823739 -211213419 - MLT1L LTR MaLR -310 305 183 227 241 37 0 chr3 6823778 6823832 -211213326 - MLT1L LTR MaLR -418 197 142 195 42 0 0 chr3 6824019 6824043 -211213115 + (GAATG)n Simple_repeat Simple_repeat 2 25 0 182 246 311 16 chr3 6824871 6824932 -211212226 - L2 LINE L2 -87 3185 3107 1985 38 0 0 chr3 6825049 6825288 -211211870 - L1P LINE L1 -1626 4520 4282 242 303 53 13 chr3 6825332 6825408 -211211750 - L2 LINE L2 -200 3072 2994 2020 135 7 0 chr3 6826766 6827070 -211210088 + AluSx SINE Alu 5 310 -2 2078 117 85 70 chr3 6827364 6827403 -211209755 - MSTA LTR MaLR 0 428 391 2268 103 3 3 chr3 6827403 6827704 -211209454 + AluSx SINE Alu 1 301 -11 2078 117 85 70 chr3 6827704 6827738 -211209420 - MSTA LTR MaLR -37 391 359 2104 131 0 3 chr3 6827738 6828028 -211209130 + AluSx SINE Alu 1 289 -23 2078 117 85 70 chr3 6828028 6828365 -211208793 - MSTA LTR MaLR -69 359 11 856 257 10 10 chr3 6829237 6829443 -211207715 - MLT1A1 LTR MaLR 0 365 160 2224 121 0 0 chr3 6829463 6829761 -211207397 - AluSx SINE Alu -14 298 1 448 52 0 17 chr3 6829761 6829819 -211207339 - MSTC LTR MaLR -371 57 1 2566 115 54 79 chr3 6829952 6830228 -211206930 - MLT1C LTR MaLR 0 467 207 1549 178 3 53 chr3 6830228 6830549 -211206609 - AluJo SINE Alu -7 305 1 2566 115 54 79 chr3 6830549 6830751 -211206407 - MLT1C LTR MaLR -260 207 1 43863 32 21 1 chr3 6830963 6836996 -211200162 + L1HS LINE L1 1 6155 0 24 0 0 0 chr3 6836996 6837020 -211200138 + AT_rich Low_complexity Low_complexity 1 24 0 433 246 84 26 chr3 6837072 6837226 -211199932 - MIR3 SINE MIR -1 207 37 511 254 89 78 chr3 6837523 6838129 -211199029 + L1MC4 LINE L1 7229 7827 -215 477 137 0 0 chr3 6838129 6838202 -211198956 + L1PB4 LINE L1 6070 6142 -14 511 254 89 78 chr3 6838202 6838214 -211198944 + L1MC4 LINE L1 7827 7837 -205 855 172 0 0 chr3 6838214 6838342 -211198816 + FLAM_C SINE Alu 1 128 -5 511 254 89 78 chr3 6838342 6838506 -211198652 + L1MC4 LINE L1 7837 8037 -5 279 0 0 0 chr3 6838596 6838627 -211198531 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2375 101 0 3 chr3 6838637 6838945 -211198213 - AluSg SINE Alu -3 307 1 423 249 26 74 chr3 6839075 6839264 -211197894 + L1MC4a LINE L1 5750 5929 -1879 2616 189 37 2 chr3 6839332 6839851 -211197307 + L1MB7 LINE L1 4012 4548 -1598 863 123 23 8 chr3 6839857 6839987 -211197171 - FLAM_C SINE Alu -11 132 1 4326 183 56 46 chr3 6839988 6841621 -211195537 + L1MB7 LINE L1 4540 6179 -5 360 0 0 0 chr3 6842193 6842233 -211194925 + (TG)n Simple_repeat Simple_repeat 1 40 0 216 97 0 0 chr3 6842233 6842264 -211194894 + (GA)n Simple_repeat Simple_repeat 2 32 0 491 208 196 23 chr3 6842879 6843052 -211194106 - MLT1H LTR MaLR -1 548 346 2173 109 10 0 chr3 6843177 6843480 -211193678 - AluY SINE Alu -5 306 1 2482 218 25 25 chr3 6844169 6844476 -211192682 - L1MB8 LINE L1 -7 6171 5862 1980 127 39 0 chr3 6844476 6844760 -211192398 - AluJb SINE Alu -17 295 1 2482 218 25 25 chr3 6844760 6845061 -211192097 - L1MB8 LINE L1 -315 5863 5563 1545 241 129 33 chr3 6845912 6846463 -211190695 + L1MC4 LINE L1 7160 7763 -279 788 194 0 15 chr3 6846470 6846604 -211190554 + FLAM_C SINE Alu 2 133 0 391 208 132 0 chr3 6846746 6846876 -211190282 + L1MD3 LINE L1 7883 8042 0 1471 141 53 46 chr3 6846892 6847176 -211189982 + AluJb SINE Alu 1 286 -26 270 115 0 0 chr3 6847176 6847228 -211189930 + (CATA)n Simple_repeat Simple_repeat 4 55 0 651 263 26 52 chr3 6847238 6847470 -211189688 + L1ME3 LINE L1 5936 6161 -1 2338 97 0 0 chr3 6847883 6848182 -211188976 + AluSc SINE Alu 1 299 -10 180 111 0 0 chr3 6848292 6848319 -211188839 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 606 174 147 0 chr3 6848447 6848556 -211188602 + FLAM_A SINE Alu 1 125 -8 693 258 32 81 chr3 6848616 6848864 -211188294 + MLT1J LTR MaLR 236 471 -40 2325 161 45 7 chr3 6848956 6849398 -211187760 + L1MB3 LINE L1 5725 6183 0 38 0 0 0 chr3 6849398 6849436 -211187722 + AT_rich Low_complexity Low_complexity 1 38 0 2135 134 0 0 chr3 6849442 6849748 -211187410 + AluSx SINE Alu 1 306 -6 1123 261 90 23 chr3 6849756 6850321 -211186837 + L2 LINE L2 2712 3311 -2 292 293 116 56 chr3 6851227 6851459 -211185699 - L2 LINE L2 -882 2432 2187 784 311 91 40 chr3 6851508 6852152 -211185006 + L2 LINE L2 2606 3280 -33 27 62 0 0 chr3 6852165 6852213 -211184945 + AT_rich Low_complexity Low_complexity 1 48 0 544 328 76 4 chr3 6852303 6852565 -211184593 - L2 LINE L2 -1163 2151 1871 719 234 224 66 chr3 6852686 6852848 -211184310 - MLT1H LTR MaLR 0 542 407 897 272 9 9 chr3 6852848 6853072 -211184086 - MER58A DNA MER1_type 0 224 1 719 234 224 66 chr3 6853072 6853350 -211183808 - MLT1H LTR MaLR -135 407 32 2381 82 0 22 chr3 6853525 6853840 -211183318 + AluSq SINE Alu 1 308 -5 2237 130 0 9 chr3 6854448 6854763 -211182395 + AluSq SINE Alu 1 312 -1 1009 172 18 0 chr3 6854776 6854939 -211182219 + FAM SINE Alu 1 166 -9 910 164 0 8 chr3 6855185 6855319 -211181839 + FLAM_A SINE Alu 1 133 0 1817 158 3 3 chr3 6855517 6855808 -211181350 + AluJb SINE Alu 1 291 -21 1867 315 62 27 chr3 6855822 6857456 -211179702 + L1M4 LINE L1 2938 4629 -1517 507 202 0 0 chr3 6857461 6857585 -211179573 + (CATATA)n Simple_repeat Simple_repeat 2 125 0 24 53 0 0 chr3 6857593 6857631 -211179527 + AT_rich Low_complexity Low_complexity 1 38 0 276 159 57 0 chr3 6857634 6857722 -211179436 + (TATATG)n Simple_repeat Simple_repeat 4 96 0 261 203 203 0 chr3 6857789 6857863 -211179295 - L1MC4 LINE L1 -1340 6702 6614 317 343 79 6 chr3 6857892 6858070 -211179088 + L1M4 LINE L1 4672 4862 -1284 1322 186 76 10 chr3 6858070 6858361 -211178797 - L1MC4 LINE L1 -2150 5658 5349 1096 215 56 53 chr3 6858366 6858724 -211178434 - L1ME2 LINE L1 0 6164 5806 3842 229 100 72 chr3 6858770 6859851 -211177307 + L1MC4 LINE L1 6502 7551 -491 1998 127 7 13 chr3 6859851 6860151 -211177007 + AluJb SINE Alu 1 298 -14 3842 229 100 72 chr3 6860151 6860351 -211176807 + L1MC4 LINE L1 7551 7744 -298 2305 65 41 0 chr3 6860351 6860641 -211176517 - AluY SINE Alu -9 302 1 3842 229 100 72 chr3 6860641 6860857 -211176301 + L1MC4 LINE L1 7744 8042 0 1222 149 159 62 chr3 6860864 6861140 -211176018 - AluJo SINE Alu -9 303 1 572 249 60 55 chr3 6861379 6861580 -211175578 + MLT1K LTR MaLR 44 245 -343 423 0 0 0 chr3 6861620 6861667 -211175491 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 313 261 153 51 chr3 6862049 6862206 -211174952 - MER5A DNA MER1_type 0 189 17 1700 159 10 20 chr3 6862554 6862849 -211174309 - AluJo SINE Alu -20 292 1 489 51 20 41 chr3 6862893 6862991 -211174167 + (TG)n Simple_repeat Simple_repeat 2 97 0 419 299 25 25 chr3 6863139 6863296 -211173862 - MIR SINE MIR -1 261 105 251 246 65 58 chr3 6863402 6863540 -211173618 - L2 LINE L2 -4 3309 3171 1563 186 17 7 chr3 6863545 6863846 -211173312 + AluJo SINE Alu 1 304 -8 214 292 258 0 chr3 6863954 6864043 -211173115 + L2 LINE L2 3201 3312 -1 450 200 51 131 chr3 6864284 6864459 -211172699 + MER103 DNA DNA 3 163 -3 548 257 138 0 chr3 6864503 6864655 -211172503 - MER96 DNA MER1_type 0 175 3 2059 150 0 10 chr3 6864999 6865313 -211171845 - AluSx SINE Alu -1 311 1 192 254 153 0 chr3 6865362 6865421 -211171737 + L2 LINE L2 3246 3313 0 2102 101 4 0 chr3 6865776 6866053 -211171105 - AluSx SINE Alu -2 310 33 1614 46 10 15 chr3 6866098 6866295 -211170863 - MER107 DNA MER1_type 0 197 2 2357 84 0 0 chr3 6866373 6866669 -211170489 - AluSx SINE Alu -16 296 1 705 324 107 9 chr3 6868168 6868608 -211168550 + L2 LINE L2 2797 3287 -26 1637 202 56 11 chr3 6868608 6868965 -211168193 + MLT1A2 LTR MaLR 1 373 -1 705 324 107 9 chr3 6868965 6868993 -211168165 + L2 LINE L2 3287 3311 -2 271 116 23 0 chr3 6869388 6869431 -211167727 - MER4E LTR ERV1 -96 670 627 2339 90 65 3 chr3 6869448 6869769 -211167389 - L1PB1 LINE L1 -1 6150 5810 459 281 31 10 chr3 6870080 6870247 -211166911 - MIR SINE MIR -2 260 91 2311 113 0 0 chr3 6870259 6870561 -211166597 + AluSx SINE Alu 1 302 -10 218 207 17 52 chr3 6870837 6870895 -211166263 + L2 LINE L2 3217 3272 0 405 231 208 31 chr3 6871821 6871951 -211165207 + MER5A DNA MER1_type 36 188 -1 330 26 0 0 chr3 6872098 6872137 -211165021 + (TG)n Simple_repeat Simple_repeat 1 39 0 559 315 88 14 chr3 6872312 6872664 -211164494 + L1ME2 LINE L1 23 400 -6023 1816 248 60 95 chr3 6872985 6874004 -211163154 + L1ME2 LINE L1 1114 2167 -4774 2404 86 0 3 chr3 6874004 6874308 -211162850 + AluSg SINE Alu 1 303 -7 1816 248 60 95 chr3 6874308 6874485 -211162673 + L1ME2 LINE L1 2167 2349 -4592 2229 118 7 0 chr3 6874485 6874790 -211162368 + AluSx SINE Alu 1 307 -5 2432 99 0 0 chr3 6874790 6875103 -211162055 + AluSp SINE Alu 1 313 0 1816 248 60 95 chr3 6875103 6875397 -211161761 + L1ME2 LINE L1 2348 2651 -4290 921 257 5 0 chr3 6875397 6875584 -211161574 + MER5A DNA MER1_type 2 189 0 1816 248 60 95 chr3 6875584 6875669 -211161489 + L1ME2 LINE L1 2651 2737 -4204 1919 163 0 3 chr3 6875669 6875982 -211161176 + AluSx SINE Alu 1 312 0 875 159 0 0 chr3 6875992 6876118 -211161040 + FLAM_C SINE Alu 1 126 -7 1816 248 60 95 chr3 6876118 6876352 -211160806 + L1ME2 LINE L1 2746 2987 -3954 1669 157 82 0 chr3 6876352 6876632 -211160526 + AluJo SINE Alu 1 303 -9 1816 248 60 95 chr3 6876632 6876851 -211160307 + L1ME2 LINE L1 2987 3212 -3729 2332 112 3 0 chr3 6876851 6877163 -211159995 + AluSp SINE Alu 1 313 0 1816 248 60 95 chr3 6877163 6877210 -211159948 + L1ME2 LINE L1 3212 3259 -3682 1615 194 3 46 chr3 6877210 6877535 -211159623 + AluJo SINE Alu 1 311 -1 1816 248 60 95 chr3 6877535 6877809 -211159349 + L1ME2 LINE L1 3259 3569 -3372 364 191 4 2 chr3 6877811 6878068 -211159090 + AluJo SINE Alu 1 300 -2 567 180 9 70 chr3 6878108 6878274 -211158884 + L1M3 LINE L1 5423 5573 -610 186 43 0 0 chr3 6878708 6878731 -211158427 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1864 198 21 5 chr3 6878731 6879105 -211158053 + L1MD2 LINE L1 5556 5935 -307 776 158 23 23 chr3 6879124 6879257 -211157901 - AluJo SINE Alu -178 134 2 1891 189 28 46 chr3 6879258 6879665 -211157493 + L1MD2 LINE L1 5922 6322 -37 1752 171 7 11 chr3 6879665 6879951 -211157207 - AluJb SINE Alu -27 285 1 1891 189 28 46 chr3 6879951 6879976 -211157182 + L1MD2 LINE L1 6322 6346 -13 579 257 19 10 chr3 6879965 6880171 -211156987 + L1ME2 LINE L1 3619 3826 -3115 * 41234 67 5 7 chr3 6880191 6886348 -211150810 + L1PA4 LINE L1 11 6155 0 1400 279 95 2 chr3 6886354 6886932 -211150226 + L1ME2 LINE L1 3824 4455 -2486 3465 234 73 29 chr3 6886938 6887441 -211149717 + L1ME2 LINE L1 4940 5419 -1540 1858 114 42 0 chr3 6887441 6887705 -211149453 - AluSq SINE Alu -21 292 18 3465 234 73 29 chr3 6887705 6889134 -211148024 + L1ME2 LINE L1 5419 6959 0 1198 121 0 0 chr3 6889380 6889546 -211147612 - AluSg/x SINE Alu -9 303 138 415 268 141 0 chr3 6889772 6889914 -211147244 + MIR3 SINE MIR 39 200 -8 2016 146 0 3 chr3 6890098 6890393 -211146765 + AluSx SINE Alu 1 294 -18 195 283 233 33 chr3 6890514 6890634 -211146524 - L2 LINE L2 -4 3268 3125 642 233 91 6 chr3 6890671 6890847 -211146311 + MER91A DNA MER1_type 4 194 -2 346 265 81 70 chr3 6890966 6891232 -211145926 + L2 LINE L2 2782 3053 -219 1013 198 40 0 chr3 6891232 6891434 -211145724 - AluJb SINE Alu -16 296 87 279 252 23 118 chr3 6891468 6891730 -211145428 + L2 LINE L2 3077 3313 0 22 35 0 0 chr3 6891816 6891845 -211145313 + AT_rich Low_complexity Low_complexity 1 29 0 33 0 0 0 chr3 6892462 6892495 -211144663 + AT_rich Low_complexity Low_complexity 1 33 0 329 244 47 0 chr3 6892525 6892611 -211144547 - L1MC5 LINE L1 -75 7886 7797 2132 124 0 16 chr3 6892734 6893048 -211144110 - AluSx SINE Alu -2 310 2 23 54 0 0 chr3 6893048 6893085 -211144073 + AT_rich Low_complexity Low_complexity 1 37 0 278 330 144 0 chr3 6893128 6893301 -211143857 + MIR SINE MIR 35 232 -30 295 265 80 8 chr3 6893645 6893763 -211143395 - MIR SINE MIR -56 152 24 414 273 23 23 chr3 6894555 6894687 -211142471 - MIR SINE MIR -117 145 14 270 176 74 44 chr3 6895208 6895311 -211141847 - MIR SINE MIR -61 147 63 189 315 81 54 chr3 6895464 6895575 -211141583 + L2 LINE L2 3150 3263 -9 594 220 91 102 chr3 6895579 6895714 -211141444 - MIR SINE MIR 0 262 130 1728 129 70 22 chr3 6895714 6895985 -211141173 - AluJo SINE Alu -28 284 1 594 220 91 102 chr3 6895985 6896113 -211141045 - MIR SINE MIR -132 130 2 824 178 0 30 chr3 6897186 6897321 -211139837 - FLAM_C SINE Alu -2 131 1 740 225 99 31 chr3 6897351 6897573 -211139585 - MIR SINE MIR -20 242 6 505 225 0 45 chr3 6897626 6897737 -211139421 - L2 LINE L2 0 3313 3208 230 238 0 165 chr3 6897642 6897806 -211139352 - MIR SINE MIR -10 252 116 * 474 300 0 0 chr3 6897871 6897981 -211139177 - L2 LINE L2 -10 3262 3153 823 164 7 26 chr3 6898245 6898397 -211138761 + AluJb SINE Alu 140 288 -24 306 291 74 3 chr3 6898416 6898531 -211138627 + MIR3 SINE MIR 75 194 -54 384 152 15 0 chr3 6898757 6898823 -211138335 + L1MEc LINE L1 37 103 -6293 * 414 265 8 17 chr3 6898822 6898939 -211138219 + L1MEc LINE L1 706 821 -5575 644 203 0 31 chr3 6898953 6899081 -211138077 + L2 LINE L2 3190 3313 0 644 221 177 6 chr3 6899754 6899935 -211137223 + MIR SINE MIR 14 225 -37 391 290 60 0 chr3 6900003 6900103 -211137055 + MIR SINE MIR 39 144 -64 368 270 34 0 chr3 6900106 6900195 -211136963 + L2 LINE L2 3195 3286 -27 886 172 5 106 chr3 6900206 6900283 -211136875 - MER45A DNA AcHobo -1403 178 95 2356 85 3 0 chr3 6900283 6900589 -211136569 + AluSg SINE Alu 1 307 -3 886 172 5 106 chr3 6900589 6900603 -211136555 - MER45A DNA AcHobo -1486 95 81 2162 106 7 3 chr3 6900603 6900906 -211136252 + AluSp SINE Alu 1 304 -9 886 172 5 106 chr3 6900906 6901011 -211136147 - MER45A DNA AcHobo -1500 81 1 300 289 26 26 chr3 6901011 6901125 -211136033 + MIR SINE MIR 149 262 0 204 225 99 84 chr3 6901123 6901194 -211135964 - MIR SINE MIR -66 196 125 * 916 98 0 0 chr3 6901210 6901333 -211135825 + FLAM_C SINE Alu 1 123 -20 361 281 114 23 chr3 6901795 6902052 -211135106 + L2 LINE L2 2774 3052 -261 879 134 0 0 chr3 6902053 6902180 -211134978 + FLAM_C SINE Alu 1 127 -16 226 358 0 0 chr3 6902383 6902450 -211134708 + L2 LINE L2 3204 3270 -2 220 311 68 0 chr3 6902459 6902533 -211134625 + MIR SINE MIR 75 153 -55 2110 107 0 0 chr3 6902545 6902834 -211134324 - AluSx SINE Alu -6 306 18 240 209 0 0 chr3 6902887 6902930 -211134228 - L2 LINE L2 -19 3294 3252 2017 144 0 0 chr3 6903155 6903467 -211133691 + AluJb SINE Alu 1 312 0 782 154 0 29 chr3 6904031 6904167 -211132991 - FLAM_C SINE Alu 0 133 2 1833 153 3 19 chr3 6904245 6904552 -211132606 + AluJb SINE Alu 1 302 -10 22 0 0 0 chr3 6904557 6904579 -211132579 + AT_rich Low_complexity Low_complexity 1 22 0 1993 115 28 0 chr3 6904689 6904977 -211132181 + AluSx SINE Alu 1 296 -16 1962 144 100 19 chr3 6905246 6905607 -211131551 - MLT1B LTR MaLR 0 390 1 264 261 59 34 chr3 6905699 6905818 -211131340 + L2 LINE L2 3173 3294 -19 1971 98 41 10 chr3 6905909 6906204 -211130954 - AluSg SINE Alu -6 304 1 384 234 36 7 chr3 6906283 6906420 -211130738 + L1MC4 LINE L1 7902 8042 0 1213 149 160 62 chr3 6906428 6906703 -211130455 - AluJo SINE Alu 0 302 1 605 249 60 55 chr3 6906942 6907143 -211130015 + MLT1K LTR MaLR 44 245 -343 423 0 0 0 chr3 6907183 6907230 -211129928 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 328 261 153 51 chr3 6907612 6907769 -211129389 - MER5A DNA MER1_type 0 189 17 1606 159 10 20 chr3 6908117 6908412 -211128746 - AluJo SINE Alu -20 292 1 489 51 20 41 chr3 6908456 6908554 -211128604 + (TG)n Simple_repeat Simple_repeat 2 97 0 441 294 31 25 chr3 6908702 6908862 -211128296 - MIR SINE MIR -1 261 101 263 246 65 58 chr3 6908965 6909103 -211128055 - L2 LINE L2 -4 3309 3171 1475 186 17 7 chr3 6909108 6909409 -211127749 + AluJo SINE Alu 1 304 -8 224 292 258 0 chr3 6909517 6909606 -211127552 + L2 LINE L2 3201 3312 -1 422 200 51 131 chr3 6909847 6910022 -211127136 + MER103 DNA DNA 3 163 -3 512 257 138 0 chr3 6910066 6910218 -211126940 - MER96 DNA MER1_type 0 175 3 1960 150 0 10 chr3 6910562 6910876 -211126282 - AluSx SINE Alu -1 311 1 196 254 153 0 chr3 6910925 6910984 -211126174 + L2 LINE L2 3246 3313 0 2006 101 4 0 chr3 6911339 6911616 -211125542 - AluSx SINE Alu -2 310 33 1537 46 10 15 chr3 6911661 6911858 -211125300 - MER107 DNA MER1_type 0 197 2 2250 84 0 0 chr3 6911936 6912232 -211124926 - AluSx SINE Alu -16 296 1 743 324 107 9 chr3 6913731 6914171 -211122987 + L2 LINE L2 2797 3287 -26 1540 202 56 11 chr3 6914171 6914528 -211122630 + MLT1A2 LTR MaLR 1 373 -1 743 324 107 9 chr3 6914528 6914556 -211122602 + L2 LINE L2 3287 3311 -2 279 116 23 0 chr3 6914951 6914994 -211122164 - MER4E LTR ERV1 -96 670 627 2240 89 0 3 chr3 6915011 6915315 -211121843 - L1PB1 LINE L1 -1 6150 5848 483 281 31 10 chr3 6915643 6915810 -211121348 - MIR SINE MIR -2 260 91 2198 113 0 0 chr3 6915822 6916124 -211121034 + AluSx SINE Alu 1 302 -10 224 207 17 52 chr3 6916400 6916458 -211120700 + L2 LINE L2 3217 3272 0 414 231 208 31 chr3 6917384 6917514 -211119644 + MER5A DNA MER1_type 36 188 -1 330 26 0 0 chr3 6917661 6917700 -211119458 + (TG)n Simple_repeat Simple_repeat 1 39 0 505 307 83 17 chr3 6917926 6918226 -211118932 + L1MCc LINE L1 81 400 -6023 1564 248 63 99 chr3 6918547 6919566 -211117592 + L1MCc LINE L1 1114 2167 -4774 2292 86 0 3 chr3 6919566 6919870 -211117288 + AluSg SINE Alu 1 303 -7 1564 248 63 99 chr3 6919870 6920047 -211117111 + L1MCc LINE L1 2167 2349 -4592 2114 118 7 0 chr3 6920047 6920352 -211116806 + AluSx SINE Alu 1 307 -5 2319 99 0 0 chr3 6920352 6920665 -211116493 + AluSp SINE Alu 1 313 0 1564 248 63 99 chr3 6920665 6920959 -211116199 + L1MCc LINE L1 2348 2651 -4290 839 257 5 0 chr3 6920959 6921146 -211116012 + MER5A DNA MER1_type 2 189 0 1564 248 63 99 chr3 6921146 6921231 -211115927 + L1MCc LINE L1 2651 2737 -4204 1816 163 0 3 chr3 6921231 6921544 -211115614 + AluSx SINE Alu 1 312 0 827 159 0 0 chr3 6921554 6921680 -211115478 + FLAM_C SINE Alu 1 126 -7 1564 248 63 99 chr3 6921680 6921914 -211115244 + L1MCc LINE L1 2746 2987 -3954 1572 157 82 0 chr3 6921914 6922194 -211114964 + AluJo SINE Alu 1 303 -9 1564 248 63 99 chr3 6922194 6922413 -211114745 + L1MCc LINE L1 2987 3257 -3684 2221 107 3 0 chr3 6922413 6922721 -211114437 + AluSp SINE Alu 1 309 -4 1564 248 63 99 chr3 6922721 6922761 -211114397 + L1MCc LINE L1 3257 3297 -3644 577 205 9 18 chr3 6922774 6922886 -211114272 + FLAM_C SINE Alu 3 113 -30 185 0 40 0 chr3 6924718 6924743 -211112415 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 297 0 0 0 chr3 6924742 6924775 -211112383 + (CA)n Simple_repeat Simple_repeat 2 34 0 273 234 9 72 chr3 6926071 6926182 -211110976 + L1ME LINE L1 5725 5828 -293 318 167 0 0 chr3 6927387 6927447 -211109711 + (TG)n Simple_repeat Simple_repeat 2 61 0 33 0 0 0 chr3 6928468 6928501 -211108657 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr3 6929323 6929349 -211107809 + AT_rich Low_complexity Low_complexity 1 26 0 390 229 0 0 chr3 6930915 6930998 -211106160 - MIR SINE MIR -101 161 79 791 261 81 5 chr3 6931160 6931382 -211105776 - MIR SINE MIR -22 240 2 208 304 128 16 chr3 6931425 6931550 -211105608 - MIR SINE MIR 0 262 124 363 284 0 0 chr3 6931562 6931643 -211105515 - MIR SINE MIR -63 145 65 316 301 62 9 chr3 6931696 6931809 -211105349 - MIR SINE MIR -54 208 90 2034 109 10 0 chr3 6931999 6932292 -211104866 + AluJb SINE Alu 1 296 -16 183 80 0 0 chr3 6932407 6932432 -211104726 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 22 35 0 0 chr3 6933558 6933587 -211103571 + AT_rich Low_complexity Low_complexity 1 29 0 4073 175 32 28 chr3 6933615 6934461 -211102697 + L1MB5 LINE L1 5314 6166 -8 987 148 37 70 chr3 6934473 6934717 -211102441 - L1MC5 LINE L1 -68 7893 7658 2229 87 7 0 chr3 6934809 6935108 -211102050 + AluSg SINE Alu 1 301 -9 1607 171 32 4 chr3 6935226 6935506 -211101652 + AluJo SINE Alu 1 288 -24 1047 285 77 6 chr3 6935571 6935908 -211101250 - L1MC4a LINE L1 -1865 5943 5583 291 242 55 11 chr3 6935955 6936046 -211101112 + L1MC4a LINE L1 5560 5654 -467 33 0 0 0 chr3 6936051 6936084 -211101074 + AT_rich Low_complexity Low_complexity 1 33 0 750 171 0 0 chr3 6936084 6936201 -211100957 - FLAM_C SINE Alu -25 118 2 215 267 0 0 chr3 6936278 6936323 -211100835 + polypurine Low_complexity Low_complexity 4 48 0 306 303 127 42 chr3 6936342 6936507 -211100651 + L1MC4a LINE L1 5755 5933 -1875 514 211 65 16 chr3 6936529 6936652 -211100506 + MIR SINE MIR 110 238 -24 432 230 85 67 chr3 6936700 6936865 -211100293 + L1ME4a LINE L1 5943 6110 -11 268 356 104 0 chr3 6937171 6937286 -211099872 + L2 LINE L2 3146 3272 0 486 254 57 51 chr3 6937299 6937476 -211099682 + MIR SINE MIR 80 257 -5 902 167 88 21 chr3 6937489 6937681 -211099477 + AluJo SINE Alu 87 291 -21 34 24 0 0 chr3 6937682 6937723 -211099435 + AT_rich Low_complexity Low_complexity 1 41 0 291 114 0 0 chr3 6937833 6937877 -211099281 + (CA)n Simple_repeat Simple_repeat 1 44 0 524 243 225 0 chr3 6937929 6938102 -211099056 - MIR SINE MIR -28 234 23 423 290 46 100 chr3 6939561 6939820 -211097338 - L2 LINE L2 0 3272 3028 2000 183 41 31 chr3 6939851 6940267 -211096891 + MLT1C LTR MaLR 44 463 -4 259 263 71 30 chr3 6940270 6940369 -211096789 - L2 LINE L2 -345 2969 2867 2355 49 0 16 chr3 6940965 6941272 -211095886 - AluY SINE Alu -9 302 1 232 136 0 169 chr3 6941324 6941383 -211095775 + MLT1K LTR MaLR 201 249 -339 227 287 90 48 chr3 6991390 6991578 -211045580 - L2 LINE L2 -380 2934 2739 706 172 8 30 chr3 6991742 6991876 -211045282 + FLAM_C SINE Alu 1 131 -12 339 167 0 0 chr3 6991881 6991947 -211045211 + G-rich Low_complexity Low_complexity 4 69 0 1174 138 0 0 chr3 6991989 6992149 -211045009 + (T)n Simple_repeat Simple_repeat 1 160 0 253 391 0 0 chr3 6992331 6992492 -211044666 + T-rich Low_complexity Low_complexity 2 162 0 369 309 119 66 chr3 6994241 6994484 -211042674 + L2 LINE L2 3014 3269 -3 830 271 24 82 chr3 6994659 6995120 -211042038 + MER34 LTR ERV1 1 434 -108 715 124 0 0 chr3 6995142 6995239 -211041919 + FLAM_C SINE Alu 21 117 -26 260 77 0 0 chr3 6995506 6995545 -211041613 - MADE1 DNA Mariner 0 80 42 1006 191 19 10 chr3 6995605 6995814 -211041344 + MER82 DNA MER2_type 10 220 -433 428 82 0 0 chr3 6996049 6996110 -211041048 - Alu SINE Alu -9 301 241 1492 264 19 16 chr3 6996111 6996479 -211040679 + MER82 DNA MER2_type 212 580 -73 282 80 0 60 chr3 6998915 6998965 -211038193 + Alu SINE Alu 1 47 -261 970 141 19 0 chr3 6998965 6999121 -211038037 + AluSg/x SINE Alu 143 301 -11 375 298 92 26 chr3 6999156 6999384 -211037774 + MIR SINE MIR 14 256 -6 459 273 0 0 chr3 6999517 6999627 -211037531 - MER94 DNA DNA 0 134 25 260 300 186 14 chr3 7000012 7000152 -211037006 - MER117 DNA MER1_type -15 182 19 1090 251 58 69 chr3 7000451 7001027 -211036131 + L2 LINE L2 2760 3306 -7 1718 122 37 10 chr3 7002250 7002546 -211034612 - AluSx SINE Alu -8 304 1 201 362 133 0 chr3 7002671 7002776 -211034382 - L2 LINE L2 -1 3312 3194 293 315 11 0 chr3 7003134 7003226 -211033932 - MIR3 SINE MIR -25 183 91 1484 196 28 11 chr3 7004189 7004475 -211032683 - AluJo SINE Alu -21 291 1 721 282 43 60 chr3 7004571 7004872 -211032286 - L2 LINE L2 -13 3300 3005 531 298 12 6 chr3 7005052 7005220 -211031938 - MIR SINE MIR -22 240 72 198 284 74 53 chr3 7005325 7005420 -211031738 + MIR SINE MIR 70 166 -96 425 339 15 0 chr3 7006093 7006272 -211030886 - MIR SINE MIR -44 218 36 3788 55 13 0 chr3 7006859 7007335 -211029823 - L1PA6 LINE L1 -199 5955 5474 * 6560 55 22 2 chr3 7007334 7008203 -211028955 + L1P LINE L1 3694 4579 -1567 324 324 118 42 chr3 7008385 7008623 -211028535 + HAL1b LINE L1 15 270 -1078 195 298 64 53 chr3 7009161 7009255 -211027903 + MIR3 SINE MIR 111 205 -3 1366 186 13 68 chr3 7009512 7009819 -211027339 + AluJb SINE Alu 1 290 -22 533 264 21 7 chr3 7010152 7010292 -211026866 - MIR SINE MIR -48 214 73 1087 101 0 0 chr3 7010350 7010498 -211026660 - Tigger7 DNA MER2_type -1 2486 2339 341 171 100 0 chr3 7010517 7010587 -211026571 - Tigger7 DNA MER2_type -473 77 1 429 270 162 0 chr3 7010779 7010927 -211026231 + MIR3 SINE MIR 33 204 -4 1878 104 45 3 chr3 7011245 7011534 -211025624 + AluSx SINE Alu 1 301 -11 2072 107 0 7 chr3 7011545 7011834 -211025324 + AluSc SINE Alu 1 287 -22 318 244 145 53 chr3 7011843 7011974 -211025184 + L3 LINE CR1 1206 1348 -229 366 274 35 9 chr3 7011974 7012087 -211025071 + LTR16A1 LTR ERVL 4 119 -338 234 0 0 0 chr3 7012287 7012313 -211024845 + (CAGG)n Simple_repeat Simple_repeat 1 26 0 1994 127 23 10 chr3 7014244 7014552 -211022606 + AluSx SINE Alu 1 312 0 33 25 0 0 chr3 7014552 7014592 -211022566 + AT_rich Low_complexity Low_complexity 1 40 0 290 324 75 0 chr3 7015595 7015740 -211021418 - MIR3 SINE MIR -30 178 24 440 280 213 14 chr3 7016457 7016664 -211020494 - MIR SINE MIR -1 261 14 268 234 0 0 chr3 7016882 7016946 -211020212 - MIR SINE MIR -132 130 67 193 313 205 0 chr3 7016976 7017059 -211020099 - L2 LINE L2 -18 3254 3155 2250 100 0 0 chr3 7017101 7017402 -211019756 - AluSx SINE Alu -11 301 1 427 118 24 0 chr3 7018002 7018087 -211019071 + CT-rich Low_complexity Low_complexity 2 88 0 1710 172 3 3 chr3 7018250 7018546 -211018612 - AluJb SINE Alu -16 296 1 183 217 0 0 chr3 7019052 7019112 -211018046 + GA-rich Low_complexity Low_complexity 2 61 0 1812 142 14 7 chr3 7019197 7019492 -211017666 + AluJb SINE Alu 1 297 -15 382 283 5 43 chr3 7019499 7019683 -211017475 + GA-rich Low_complexity Low_complexity 2 178 0 534 225 113 31 chr3 7019791 7019951 -211017207 + MIR SINE MIR 29 201 -61 1244 136 117 0 chr3 7019956 7020073 -211017085 + MER30 DNA MER1_type 1 103 -127 2385 52 0 0 chr3 7020073 7020362 -211016796 - AluSc SINE Alu -20 289 1 1244 136 117 0 chr3 7020362 7020450 -211016708 + MER30 DNA MER1_type 103 230 0 277 267 0 27 chr3 7020614 7020689 -211016469 - MER94 DNA DNA -61 73 1 418 258 144 6 chr3 7020706 7020873 -211016285 - Charlie8 DNA MER1_type -2136 281 92 230 256 14 145 chr3 7020988 7021195 -211015963 - L2 LINE L2 -92 3180 3001 707 283 0 12 chr3 7021251 7021424 -211015734 - MIR SINE MIR -24 238 68 2050 116 0 0 chr3 7021760 7022044 -211015114 + AluSc SINE Alu 1 284 -25 216 175 175 0 chr3 7022090 7022147 -211015011 - MIR SINE MIR -108 100 34 333 284 129 32 chr3 7022837 7022992 -211014166 - L2 LINE L2 -7 3306 3137 1002 196 23 46 chr3 7023012 7023231 -211013927 - MER20 DNA MER1_type -5 214 1 1563 164 7 14 chr3 7023293 7023579 -211013579 + AluJo SINE Alu 14 297 -15 1040 148 61 13 chr3 7023579 7023809 -211013349 - MER33 DNA MER1_type -24 300 60 336 198 143 11 chr3 7023906 7023997 -211013161 + MER5A DNA MER1_type 4 106 -83 222 224 129 12 chr3 7024144 7024229 -211012929 + MIR SINE MIR 99 193 -69 2006 110 3 3 chr3 7025290 7025581 -211011577 + AluSx SINE Alu 1 291 -21 342 76 0 45 chr3 7025593 7025659 -211011499 + (GGAA)n Simple_repeat Simple_repeat 1 63 0 557 245 182 10 chr3 7025886 7026078 -211011080 + MIR SINE MIR 33 257 -5 336 255 92 10 chr3 7026093 7026191 -211010967 - MIR SINE MIR -155 107 2 275 262 0 0 chr3 7026276 7026337 -211010821 + MLT1K LTR MaLR 5 65 -523 676 260 250 32 chr3 7026357 7026669 -211010489 + MLT1K LTR MaLR 206 585 -3 2138 117 3 0 chr3 7027041 7027349 -211009809 - AluSq SINE Alu -4 309 1 181 200 25 0 chr3 7027426 7027466 -211009692 - L2 LINE L2 -5 3267 3227 2184 153 46 57 chr3 7028109 7028157 -211009001 - L1MB4 LINE L1 0 6180 6133 1599 175 3 3 chr3 7028157 7028442 -211008716 - AluJb SINE Alu -17 295 11 2184 153 46 57 chr3 7028442 7028870 -211008288 - L1MB4 LINE L1 -47 6133 5709 280 231 0 0 chr3 7029052 7029104 -211008054 + 5S rRNA rRNA 1 52 -69 646 208 60 24 chr3 7029368 7029536 -211007622 + MIR SINE MIR 72 245 -17 271 167 111 0 chr3 7029787 7029841 -211007317 + MIR SINE MIR 123 182 -80 1758 149 0 34 chr3 7029976 7030299 -211006859 + AluSx SINE Alu 1 312 0 189 94 0 0 chr3 7030387 7030419 -211006739 + (CAACC)n Simple_repeat Simple_repeat 2 33 0 236 302 15 65 chr3 7031444 7031463 -211005695 - MIR SINE MIR -33 175 157 2208 65 0 29 chr3 7031463 7031769 -211005389 - AluY SINE Alu -14 297 1 236 302 15 65 chr3 7031769 7031887 -211005271 - MIR SINE MIR -51 157 46 2071 110 10 0 chr3 7031907 7032206 -211004952 - AluSq SINE Alu -10 303 2 1564 180 79 75 chr3 7032309 7032758 -211004400 + Charlie1b DNA MER1_type 1 454 -2307 2075 117 0 3 chr3 7032758 7033057 -211004101 - AluSx SINE Alu -14 298 1 1564 180 79 75 chr3 7033057 7033128 -211004030 + Charlie1b DNA MER1_type 454 523 0 1936 117 17 17 chr3 7033177 7033476 -211003682 - AluSx SINE Alu -13 299 1 327 65 0 0 chr3 7033528 7033574 -211003584 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 782 172 0 8 chr3 7033574 7033708 -211003450 - FLAM_C SINE Alu 0 133 1 579 230 182 7 chr3 7033722 7033870 -211003288 - MER5A DNA MER1_type -15 174 1 356 259 61 83 chr3 7034554 7034782 -211002376 - MER102b DNA MER1_type -1 340 118 730 157 0 57 chr3 7034832 7034972 -211002186 + AluJo/FLAM SINE Alu 1 132 -170 2253 99 0 0 chr3 7034972 7035275 -211001883 + AluSx SINE Alu 1 303 -9 521 208 31 6 chr3 7035275 7035418 -211001740 + GA-rich Low_complexity Low_complexity 1 150 -13 1817 111 47 11 chr3 7035418 7035697 -211001461 + AluSx SINE Alu 1 289 -23 521 208 31 6 chr3 7035697 7035712 -211001446 + GA-rich Low_complexity Low_complexity 150 163 0 468 0 0 0 chr3 7035777 7035829 -211001329 + (CA)n Simple_repeat Simple_repeat 2 53 0 2054 106 10 0 chr3 7036170 7036462 -211000696 + AluSq SINE Alu 1 295 -18 1517 179 0 32 chr3 7036615 7036927 -211000231 + AluJo SINE Alu 11 312 0 334 281 47 64 chr3 7037131 7037302 -210999856 + MIR SINE MIR 45 212 -50 435 301 58 13 chr3 7037400 7037556 -210999602 - MIR SINE MIR -39 223 61 1626 177 7 11 chr3 7037655 7037788 -210999370 + AluJo SINE Alu 1 133 -179 2292 61 0 52 chr3 7037788 7038114 -210999044 + AluY SINE Alu 1 309 -2 1626 177 7 11 chr3 7038114 7038262 -210998896 + AluJo SINE Alu 133 281 -31 252 100 0 0 chr3 7038262 7038302 -210998856 + (CA)n Simple_repeat Simple_repeat 1 40 0 1598 153 20 20 chr3 7038312 7038606 -210998552 + AluJb SINE Alu 5 298 -14 186 43 0 0 chr3 7038606 7038629 -210998529 + (TA)n Simple_repeat Simple_repeat 2 24 0 1800 150 0 25 chr3 7038694 7038833 -210998325 + AluSx SINE Alu 1 142 -170 2262 81 3 7 chr3 7038833 7039130 -210998028 + AluSg SINE Alu 2 297 -13 1800 150 0 25 chr3 7039130 7039310 -210997848 + AluSx SINE Alu 142 312 0 231 307 86 57 chr3 7039326 7039466 -210997692 - L2 LINE L2 -2 3311 3168 254 324 102 25 chr3 7039502 7039733 -210997425 - L2 LINE L2 -276 3037 2791 373 217 43 7 chr3 7039740 7039878 -210997280 + (TA)n Simple_repeat Simple_repeat 2 144 0 29 0 0 0 chr3 7039914 7039943 -210997215 + AT_rich Low_complexity Low_complexity 1 29 0 702 75 0 0 chr3 7039972 7040066 -210997092 - L1PA5 LINE L1 0 6154 6061 624 219 14 0 chr3 7040092 7040238 -210996920 - L1MA10 LINE L1 -13 6321 6174 1887 137 14 0 chr3 7040239 7040531 -210996627 + AluJo SINE Alu 1 296 -16 503 259 45 58 chr3 7040531 7040774 -210996384 - L1MD2 LINE L1 -139 6027 5788 268 304 14 109 chr3 7040817 7040955 -210996203 + MIR SINE MIR 32 156 -106 399 293 73 44 chr3 7041626 7041831 -210995327 + MIR SINE MIR 31 241 -21 263 93 23 0 chr3 7041890 7041933 -210995225 + (TG)n Simple_repeat Simple_repeat 2 45 0 874 269 129 6 chr3 7042033 7042367 -210994791 + L3 LINE CR1 1161 1535 -42 360 0 0 0 chr3 7042520 7042560 -210994598 + (T)n Simple_repeat Simple_repeat 1 40 0 359 203 100 144 chr3 7042643 7042914 -210994244 - MLT1K LTR MaLR 0 588 330 1306 194 0 68 chr3 7043043 7043367 -210993791 + AluJo SINE Alu 1 302 -10 1958 126 0 3 chr3 7043369 7043654 -210993504 + AluSx SINE Alu 1 284 -28 222 37 0 0 chr3 7043654 7043681 -210993477 + (CCAA)n Simple_repeat Simple_repeat 2 28 0 592 326 84 45 chr3 7043798 7044317 -210992841 + L2 LINE L2 2684 3260 -12 817 213 38 85 chr3 7045025 7045151 -210992007 + MIR SINE MIR 29 140 -122 1862 122 40 0 chr3 7045151 7045447 -210991711 - AluSx SINE Alu -4 308 1 817 213 38 85 chr3 7045447 7045555 -210991603 + MIR SINE MIR 140 252 -10 274 171 157 14 chr3 7045660 7045730 -210991428 - L2 LINE L2 -5 3308 3229 1993 110 12 95 chr3 7045881 7046228 -210990930 - L1PBa LINE L1 -4936 1927 1618 2105 108 0 29 chr3 7046228 7046542 -210990616 - AluSx SINE Alu -7 305 1 1993 110 12 95 chr3 7046542 7046604 -210990554 - L1PBa LINE L1 -5245 1618 1552 593 338 18 14 chr3 7046822 7047041 -210990117 + MIR SINE MIR 42 261 -1 251 295 67 0 chr3 7047099 7047204 -210989954 + L1ME4a LINE L1 6010 6121 0 1882 124 9 25 chr3 7047379 7047694 -210989464 + AluSx SINE Alu 1 310 -2 278 283 76 0 chr3 7048076 7048168 -210988990 - MLT1K LTR MaLR -280 308 210 292 323 21 0 chr3 7048535 7048628 -210988530 + MIR3 SINE MIR 108 202 -6 206 286 0 0 chr3 7048817 7048866 -210988292 - MIR SINE MIR -55 207 159 2185 166 69 51 chr3 7048866 7049360 -210987798 + MLT1D LTR MaLR 1 503 -2 2214 101 3 7 chr3 7049388 7049695 -210987463 + AluSx SINE Alu 1 306 -6 264 261 59 34 chr3 7049786 7049905 -210987253 - L2 LINE L2 -19 3294 3173 1988 144 100 17 chr3 7049997 7050357 -210986801 + MLT1B LTR MaLR 1 390 0 1993 115 28 0 chr3 7050625 7050913 -210986245 - AluSx SINE Alu -16 296 1 22 0 0 0 chr3 7051023 7051045 -210986113 + AT_rich Low_complexity Low_complexity 1 22 0 1833 153 3 19 chr3 7051050 7051357 -210985801 - AluJb SINE Alu -10 302 1 793 147 0 29 chr3 7051435 7051571 -210985587 + FLAM_C SINE Alu 2 133 0 529 262 66 20 chr3 7051734 7052033 -210985125 - MLT1I LTR MaLR 0 409 61 2626 97 28 14 chr3 7052036 7052397 -210984761 + THE1C LTR MaLR 10 375 0 711 261 96 5 chr3 7052459 7052677 -210984481 - MLT1L LTR MaLR -10 605 368 4731 136 16 6 chr3 7052701 7053405 -210983753 + MER50 LTR ERV1 1 711 -23 1921 136 0 28 chr3 7053455 7053772 -210983386 - AluJb SINE Alu -4 308 1 502 281 75 48 chr3 7053775 7054070 -210983088 - MLT1L LTR MaLR -310 305 3 254 259 111 0 chr3 7054113 7054194 -210982964 - MIR SINE MIR -59 203 114 2060 123 0 3 chr3 7054673 7054974 -210982184 + AluSx SINE Alu 1 300 -12 716 201 0 29 chr3 7055235 7055374 -210981784 + FLAM_C SINE Alu 6 140 -3 457 304 125 18 chr3 7055432 7055656 -210981502 - MIR SINE MIR -12 250 3 333 239 14 34 chr3 7055746 7055852 -210981306 - MIR SINE MIR -92 116 14 480 295 95 20 chr3 7056695 7056895 -210980263 + MIR SINE MIR 47 261 -1 185 108 27 0 chr3 7057194 7057231 -210979927 + (TGG)n Simple_repeat Simple_repeat 3 40 0 649 298 102 80 chr3 7057650 7058090 -210979068 - L2 LINE L2 -9 3263 2814 1873 113 57 0 chr3 7058133 7058416 -210978742 - AluSx SINE Alu -9 303 5 223 316 143 0 chr3 7058873 7058971 -210978187 - L2 LINE L2 -5 3308 3197 578 254 9 111 chr3 7058982 7059103 -210978055 - MIR SINE MIR -48 214 123 1870 136 0 17 chr3 7059103 7059397 -210977761 + AluSx SINE Alu 1 289 -23 578 254 9 111 chr3 7059397 7059492 -210977666 - MIR SINE MIR -139 123 20 818 146 0 8 chr3 7059519 7059642 -210977516 - FLAM_C SINE Alu -16 127 6 1054 267 140 32 chr3 7060145 7060609 -210976549 + MER20B DNA MER1_type 2 515 -268 849 205 21 38 chr3 7060715 7060954 -210976204 + MER20B DNA MER1_type 515 749 -34 2112 104 40 0 chr3 7060957 7061255 -210975903 + AluSx SINE Alu 1 310 -2 326 194 97 0 chr3 7061332 7061404 -210975754 + MER20B DNA MER1_type 207 285 -498 444 111 0 0 chr3 7061420 7061492 -210975666 + Alu SINE Alu 237 308 -2 974 243 46 102 chr3 7061574 7062056 -210975102 - L2 LINE L2 -664 2650 2196 1718 126 0 37 chr3 7062375 7062669 -210974489 + AluJb SINE Alu 12 294 -18 626 283 76 22 chr3 7063440 7063479 -210973679 + MIR SINE MIR 14 49 -213 2257 103 0 0 chr3 7063479 7063790 -210973368 - AluSx SINE Alu -1 311 1 626 283 76 22 chr3 7063790 7063973 -210973185 + MIR SINE MIR 49 248 -14 1510 153 142 54 chr3 7064068 7064421 -210972737 + MLT1B LTR MaLR 1 384 -6 247 356 9 0 chr3 7064579 7064694 -210972464 - L2 LINE L2 -370 2944 2829 1504 253 30 39 chr3 7064864 7065082 -210972076 + LTR16A LTR ERVL 20 234 -216 2064 123 0 0 chr3 7065082 7065375 -210971783 - AluSx SINE Alu -19 293 1 1504 253 30 39 chr3 7065375 7065591 -210971567 + LTR16A LTR ERVL 234 450 0 2117 114 3 0 chr3 7065710 7066007 -210971151 - AluSg SINE Alu -10 300 3 298 342 46 97 chr3 7066232 7066597 -210970561 + L2 LINE L2 2860 3242 -30 3113 173 39 22 chr3 7066597 7066748 -210970410 - MER6A DNA MER2_type -260 605 458 2134 105 3 0 chr3 7066748 7067043 -210970115 + AluSx SINE Alu 1 296 -16 2180 86 0 3 chr3 7067044 7067336 -210969822 + AluSc SINE Alu 1 291 -18 3113 173 39 22 chr3 7067336 7067777 -210969381 - MER6A DNA MER2_type -406 459 1 298 342 46 97 chr3 7067777 7067844 -210969314 + L2 LINE L2 3242 3270 -2 1601 175 14 0 chr3 7067912 7068190 -210968968 + AluJb SINE Alu 1 285 -27 593 27 13 0 chr3 7068190 7068265 -210968893 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 661 250 14 7 chr3 7068358 7068498 -210968660 + Charlie1 DNA MER1_type 1 141 -2620 * 2231 179 35 31 chr3 7068494 7068956 -210968202 + Charlie1 DNA MER1_type 2207 2673 -88 1907 153 0 0 chr3 7068956 7069256 -210967902 + AluSx SINE Alu 1 300 -12 2231 179 35 31 chr3 7069256 7069335 -210967823 + Charlie1 DNA MER1_type 2673 2750 -11 2137 104 0 10 chr3 7069335 7069643 -210967515 + AluSx SINE Alu 1 305 -7 1012 229 162 75 chr3 7069688 7070059 -210967099 - MLT1K LTR MaLR -159 429 27 1349 151 117 30 chr3 7070062 7070327 -210966831 + AluJo SINE Alu 11 298 -14 337 263 150 0 chr3 7071116 7071249 -210965909 + L3 LINE CR1 1272 1424 -153 638 193 25 0 chr3 7071375 7071494 -210965664 + AluJb SINE Alu 1 122 -190 1253 102 43 132 chr3 7071647 7071781 -210965377 + L1MA5A LINE L1 5991 6135 -168 2246 107 0 0 chr3 7071781 7072091 -210965067 - AluSx SINE Alu 0 312 3 1911 121 3 16 chr3 7072093 7072400 -210964758 - AluSg SINE Alu -6 304 2 1253 102 43 132 chr3 7072400 7072445 -210964713 + L1MA5A LINE L1 6136 6183 -120 1965 134 0 0 chr3 7072445 7072735 -210964423 + AluSq SINE Alu 1 290 -23 1253 102 43 132 chr3 7072735 7072878 -210964280 + L1MA5A LINE L1 6183 6301 -2 722 266 28 28 chr3 7074002 7074216 -210962942 - MIR SINE MIR -48 214 1 1022 262 148 10 chr3 7074339 7074763 -210962395 - MLT1J2 LTR MaLR 0 450 1 2267 92 3 10 chr3 7074867 7075181 -210961977 - AluSp SINE Alu 0 313 2 593 181 0 0 chr3 7076260 7076354 -210960804 - AluJb SINE Alu -42 270 177 443 267 0 0 chr3 7076355 7076460 -210960698 - HERVL LTR ERVL -281 5373 5269 1192 253 48 24 chr3 7076524 7076860 -210960298 + ERVL LTR ERVL 3098 3441 -2323 284 250 261 11 chr3 7076949 7077037 -210960121 + MIR SINE MIR 38 147 -61 27 62 0 0 chr3 7077319 7077367 -210959791 + AT_rich Low_complexity Low_complexity 1 48 0 697 318 55 4 chr3 7077842 7078078 -210959080 + MIR SINE MIR 13 260 -2 1395 168 40 37 chr3 7078089 7078386 -210958772 + AluJo SINE Alu 1 298 -14 2029 113 3 3 chr3 7078747 7079039 -210958119 + AluSg SINE Alu 1 292 -18 1012 167 9 79 chr3 7079230 7079457 -210957701 + AluJo SINE Alu 1 211 -101 860 272 158 14 chr3 7079464 7079832 -210957326 + LTR33 LTR ERVL 49 469 -52 2165 115 0 0 chr3 7079846 7080150 -210957008 + AluSx SINE Alu 1 304 -8 2238 148 50 5 chr3 7080160 7080560 -210956598 + L1MC1 LINE L1 5911 6328 -5 328 209 60 11 chr3 7080754 7080844 -210956314 - MLT1J LTR MaLR 0 615 416 2284 80 0 7 chr3 7080856 7081156 -210956002 + AluSx SINE Alu 2 299 -13 435 271 21 14 chr3 7081156 7081300 -210955858 + MIR SINE MIR 118 262 0 1504 106 78 78 chr3 7081941 7082234 -210954924 + AluSx SINE Alu 2 294 -18 802 141 8 0 chr3 7082314 7082442 -210954716 + AluJ SINE Alu 1 129 -173 444 277 98 27 chr3 7082548 7082732 -210954426 - MIR SINE MIR 0 262 66 1613 169 7 23 chr3 7083034 7083336 -210953822 + AluJb SINE Alu 1 297 -15 2064 128 0 10 chr3 7083339 7083651 -210953507 + AluSg SINE Alu 1 309 -1 288 0 0 0 chr3 7083838 7083870 -210953288 + (TA)n Simple_repeat Simple_repeat 1 32 0 280 238 71 0 chr3 7083879 7083963 -210953195 - L1MC4 LINE L1 -1339 6703 6614 234 0 0 0 chr3 7083963 7083989 -210953169 + (TG)n Simple_repeat Simple_repeat 2 27 0 * 378 0 0 0 chr3 7083988 7084030 -210953128 + (TA)n Simple_repeat Simple_repeat 1 42 0 201 74 0 0 chr3 7084532 7084559 -210952599 + (GAAA)n Simple_repeat Simple_repeat 3 29 0 1129 123 6 0 chr3 7084827 7084990 -210952168 + AluJ SINE Alu 135 298 -14 6306 94 47 10 chr3 7086082 7087016 -210950142 - LTR5 LTR ERVK 0 969 1 1845 147 3 7 chr3 7087582 7087874 -210949284 + AluJb SINE Alu 1 291 -21 1399 187 16 50 chr3 7088336 7088657 -210948501 + AluJo SINE Alu 1 310 -2 242 188 83 0 chr3 7089214 7089262 -210947896 + L2 LINE L2 3221 3272 0 941 202 86 73 chr3 7089272 7089294 -210947864 - L1M4 LINE L1 -754 5392 5372 1804 129 3 45 chr3 7089294 7089604 -210947554 - AluSx SINE Alu -12 300 4 941 202 86 73 chr3 7089604 7089775 -210947383 - L1M4 LINE L1 -774 5372 5205 2021 136 13 0 chr3 7089775 7090083 -210947075 - AluSx SINE Alu 0 312 1 941 202 86 73 chr3 7090083 7090260 -210946898 - L1M4 LINE L1 -941 5205 5016 457 152 0 43 chr3 7090306 7090398 -210946760 - AluJ/FRAM SINE Alu -2 310 223 36 23 0 0 chr3 7090581 7090624 -210946534 + AT_rich Low_complexity Low_complexity 1 43 0 774 90 0 0 chr3 7090629 7090729 -210946429 - HY3 scRNA scRNA -1 100 1 534 239 63 63 chr3 7090749 7090862 -210946296 - Charlie7 DNA MER1_type -29 2583 2471 1668 192 13 0 chr3 7090862 7091170 -210945988 - AluJo SINE Alu 0 312 1 534 239 63 63 chr3 7091170 7091489 -210945669 - Charlie7 DNA MER1_type -141 2471 314 352 363 55 31 chr3 7091513 7091838 -210945320 - LTR16C LTR ERVL -10 481 149 2094 109 3 0 chr3 7092823 7093127 -210944031 - AluSx SINE Alu -7 305 1 21 0 0 0 chr3 7093386 7093407 -210943751 + AT_rich Low_complexity Low_complexity 1 21 0 1692 157 7 20 chr3 7094334 7094634 -210942524 + AluSx SINE Alu 1 296 -16 382 296 53 59 chr3 7095333 7095502 -210941656 + MER5A DNA MER1_type 22 189 0 1682 150 10 20 chr3 7095812 7095945 -210941213 + AluJo SINE Alu 1 134 -178 2067 103 0 63 chr3 7095945 7096276 -210940882 + AluSg SINE Alu 1 310 0 1682 150 10 20 chr3 7096276 7096435 -210940723 + AluJo SINE Alu 134 290 -22 22 0 0 0 chr3 7097237 7097259 -210939899 + AT_rich Low_complexity Low_complexity 1 22 0 427 193 23 23 chr3 7097371 7097459 -210939699 + L2 LINE L2 3221 3308 -5 1752 137 53 0 chr3 7097538 7097822 -210939336 + AluJb SINE Alu 1 299 -13 1248 104 0 0 chr3 7097912 7098085 -210939073 + AluSp SINE Alu 132 304 -9 187 111 0 0 chr3 7098645 7098672 -210938486 - L2 LINE L2 -19 3294 3268 224 339 58 35 chr3 7098961 7099039 -210938119 + MIR SINE MIR 88 163 -99 1939 121 0 7 chr3 7099039 7099320 -210937838 + AluSg SINE Alu 1 279 -31 224 339 58 35 chr3 7099320 7099412 -210937746 + MIR SINE MIR 163 262 0 1229 134 113 79 chr3 7099612 7099904 -210937254 + AluJo SINE Alu 1 302 0 1536 110 4 25 chr3 7099916 7100161 -210936997 + AluSq SINE Alu 67 306 -7 242 303 121 0 chr3 7100890 7100989 -210936169 - L2 LINE L2 -1 3271 3161 1308 158 63 60 chr3 7101405 7101690 -210935468 + AluJo SINE Alu 23 308 -4 678 159 0 90 chr3 7102169 7102203 -210934955 - MER94 DNA DNA -1 133 98 2216 110 3 13 chr3 7102203 7102502 -210934656 - AluSx SINE Alu -16 296 1 678 159 0 90 chr3 7102502 7102612 -210934546 - MER94 DNA DNA -36 98 2 2196 157 60 35 chr3 7102651 7103103 -210934055 + MLT1C LTR MaLR 5 467 0 2341 107 22 19 chr3 7103226 7103592 -210933566 - L1PA16 LINE L1 0 6166 5800 2192 118 10 0 chr3 7103593 7103889 -210933269 - AluSq SINE Alu -14 299 1 2255 129 0 0 chr3 7104462 7104773 -210932385 + AluSx SINE Alu 1 311 -1 2108 135 0 3 chr3 7104962 7105266 -210931892 + AluSq SINE Alu 1 303 -10 2140 123 14 0 chr3 7105270 7105563 -210931595 + AluSx SINE Alu 1 297 -15 1922 128 3 61 chr3 7106148 7106461 -210930697 + AluSp SINE Alu 1 295 -18 2131 127 13 0 chr3 7106516 7106815 -210930343 + AluSg SINE Alu 1 303 -7 2513 135 46 14 chr3 7107308 7107708 -210929450 - MER65A LTR ERV1 0 445 29 2024 126 0 0 chr3 7107708 7107979 -210929179 - AluSx SINE Alu -41 271 1 2513 135 46 14 chr3 7107979 7108009 -210929149 - MER65A LTR ERV1 -416 29 1 783 163 7 22 chr3 7108044 7108179 -210928979 - FLAM_C SINE Alu 0 133 1 213 227 0 30 chr3 7108257 7108323 -210928835 + GA-rich Low_complexity Low_complexity 4 67 0 343 263 32 0 chr3 7108333 7108428 -210928730 + MER97c DNA MER1_type? 27 124 -966 206 158 26 0 chr3 7108451 7108489 -210928669 + CT-rich Low_complexity Low_complexity 4 42 0 243 202 67 58 chr3 7108491 7108595 -210928563 + L1MDa LINE L1 2535 2639 -3901 998 259 4 8 chr3 7108607 7108858 -210928300 + AluJo SINE Alu 7 256 -56 1650 235 92 74 chr3 7110473 7111266 -210925892 + L1MC4 LINE L1 7235 8041 -1 1218 162 43 43 chr3 7111463 7111698 -210925460 - MER8 DNA MER2_type -1 238 4 2242 98 0 7 chr3 7111800 7112095 -210925063 - AluSx SINE Alu -18 294 2 1283 182 42 42 chr3 7112334 7112396 -210924762 + L1PA16 LINE L1 5875 5936 -230 2180 124 3 0 chr3 7112396 7112695 -210924463 + AluSx SINE Alu 1 300 -12 1283 182 42 42 chr3 7112695 7112918 -210924240 + L1PA16 LINE L1 5935 6160 -6 196 282 0 0 chr3 7113961 7114000 -210923158 + MIR SINE MIR 37 75 -133 1200 186 53 56 chr3 7114482 7114767 -210922391 + AluJo SINE Alu 6 289 -23 2503 90 3 0 chr3 7116049 7116360 -210920798 - AluSp SINE Alu 0 313 2 1200 147 11 11 chr3 7116360 7116543 -210920615 - AluJb SINE Alu -5 307 122 293 128 0 21 chr3 7116544 7116591 -210920567 + AluSp SINE Alu 117 162 -141 817 96 0 0 chr3 7116595 7116699 -210920459 - AluJb SINE Alu -202 110 7 622 315 17 9 chr3 7117049 7117281 -210919877 + MIR SINE MIR 12 245 -17 278 363 18 33 chr3 7117339 7117399 -210919759 + L1MDa LINE L1 49 108 -6432 1970 132 3 32 chr3 7117399 7117709 -210919449 + AluSx SINE Alu 1 301 -11 278 363 18 33 chr3 7117709 7117921 -210919237 + L1MDa LINE L1 108 317 -6223 239 327 18 30 chr3 7118472 7118640 -210918518 + L1MDa LINE L1 854 1019 -5511 1072 113 0 92 chr3 7118776 7118961 -210918197 + AluSx SINE Alu 1 168 -144 2119 118 3 37 chr3 7118966 7119289 -210917869 + AluSx SINE Alu 1 312 0 4816 156 35 41 chr3 7119292 7119479 -210917679 + L1M4c LINE L1 721 908 -5476 1968 154 0 0 chr3 7119479 7119772 -210917386 + AluSx SINE Alu 1 293 -19 4816 156 35 41 chr3 7119772 7120647 -210916511 + L1M4c LINE L1 908 1776 -4608 1680 127 0 80 chr3 7120647 7120946 -210916212 + AluSx SINE Alu 1 275 -37 870 143 63 11 chr3 7120948 7121123 -210916035 + L1MB3 LINE L1 5949 6132 -51 1390 134 5 9 chr3 7121128 7121344 -210915814 + AluSg/x SINE Alu 80 294 -16 2091 203 95 97 chr3 7121373 7122105 -210915053 + L1MDa LINE L1 1469 2201 -4339 2099 146 25 22 chr3 7122105 7122467 -210914691 - THE1B LTR MaLR -1 363 1 2091 203 95 97 chr3 7122467 7122901 -210914257 + L1MDa LINE L1 2201 2634 -3906 1583 187 4 4 chr3 7122901 7123169 -210913989 + AluJo SINE Alu 6 273 -39 2091 203 95 97 chr3 7123169 7123674 -210913484 + L1MDa LINE L1 2634 3139 -3401 1170 206 65 43 chr3 7123674 7123951 -210913207 + AluJb SINE Alu 3 285 -17 2091 203 95 97 chr3 7123951 7124233 -210912925 + L1MDa LINE L1 3139 3420 -3120 1060 158 0 0 chr3 7124234 7124386 -210912772 - FRAM SINE Alu -25 151 1 1356 217 114 46 chr3 7124386 7124873 -210912285 + L1MDa LINE L1 3407 3859 -2681 2171 113 0 0 chr3 7124873 7125181 -210911977 - AluSx SINE Alu 0 308 1 2230 106 0 0 chr3 7125187 7125501 -210911657 - AluSx SINE Alu 0 314 1 1356 217 114 46 chr3 7125501 7125616 -210911542 + L1MDa LINE L1 3863 4060 -2480 564 311 11 11 chr3 7126869 7127052 -210910106 + HERVI LTR ERV1 788 970 -6815 5253 307 45 46 chr3 7127278 7128240 -210908918 + HERVI LTR ERV1 954 1915 -5870 3215 55 43 5 chr3 7128240 7128661 -210908497 + L1PA5 LINE L1 5717 6153 -1 5253 307 45 46 chr3 7128661 7132107 -210905051 + HERVI LTR ERV1 1915 5756 -2029 2141 301 41 45 chr3 7132999 7134227 -210902931 + HERVI LTR ERV1 6425 7647 -138 2287 136 5 35 chr3 7135134 7135509 -210901649 - THE1B LTR MaLR 0 364 1 682 83 0 0 chr3 7135605 7135701 -210901457 + AluY SINE Alu 208 303 -8 26 0 0 0 chr3 7136590 7136616 -210900542 + AT_rich Low_complexity Low_complexity 1 26 0 251 202 160 75 chr3 7137184 7137278 -210899880 - MIR SINE MIR -62 146 45 792 160 23 0 chr3 7137797 7137928 -210899230 + AluJo SINE Alu 2 135 -177 2286 115 3 10 chr3 7137946 7138260 -210898898 + AluSx SINE Alu 1 312 0 249 321 274 0 chr3 7138439 7138629 -210898529 - MIR SINE MIR -20 242 1 570 144 11 0 chr3 7139474 7139564 -210897594 + AluSc SINE Alu 194 284 -25 210 37 0 0 chr3 7139569 7139596 -210897562 + (TAA)n Simple_repeat Simple_repeat 3 29 0 2089 112 0 3 chr3 7139596 7139927 -210897231 + AluSx SINE Alu 1 330 0 2279 101 0 0 chr3 7139927 7140214 -210896944 + AluSg SINE Alu 1 287 -23 812 170 69 6 chr3 7140239 7140398 -210896760 + AluSg/x SINE Alu 134 302 -7 2006 139 0 3 chr3 7140535 7140829 -210896329 + AluSx SINE Alu 1 293 -19 1422 164 21 52 chr3 7141749 7142036 -210895122 - AluJb SINE Alu -30 282 5 233 324 184 7 chr3 7142281 7142417 -210894741 + L2 LINE L2 2599 2758 -556 289 366 0 18 chr3 7142563 7142675 -210894483 + L2 LINE L2 3126 3235 -37 189 0 0 0 chr3 7142973 7142994 -210894164 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 246 256 61 12 chr3 7142995 7143077 -210894081 - L2 LINE L2 -18 3295 3210 2035 83 65 7 chr3 7143145 7143422 -210893736 + AluSx SINE Alu 1 293 -19 1604 181 13 32 chr3 7143499 7143808 -210893350 + AluJo SINE Alu 6 308 -4 2467 81 0 0 chr3 7143993 7144289 -210892869 + AluSx SINE Alu 1 296 -16 1865 106 124 4 chr3 7144479 7144754 -210892404 + AluSg SINE Alu 1 308 -2 1712 135 67 28 chr3 7144867 7145149 -210892009 + AluSx SINE Alu 1 293 -19 765 154 0 8 chr3 7145359 7145489 -210891669 + AluJ SINE Alu 1 129 -173 2165 125 0 3 chr3 7145520 7145815 -210891343 + AluSx SINE Alu 1 294 -18 710 175 0 8 chr3 7145828 7145948 -210891210 - FLAM_C SINE Alu -23 120 2 926 184 0 36 chr3 7145966 7146134 -210891024 + AluJ SINE Alu 129 290 -22 1242 130 0 0 chr3 7146342 7146519 -210890639 + AluSq SINE Alu 133 309 -4 303 170 136 78 chr3 7146536 7146778 -210890380 + L1ME4a LINE L1 5538 5835 -286 272 293 113 7 chr3 7146860 7147010 -210890148 + L1ME4a LINE L1 5956 6121 0 24 0 0 0 chr3 7147016 7147040 -210890118 + AT_rich Low_complexity Low_complexity 1 24 0 2021 94 91 0 chr3 7147501 7147777 -210889381 - AluSg SINE Alu -9 301 1 2344 97 3 0 chr3 7147783 7148093 -210889065 - AluSx SINE Alu -1 311 1 21 0 0 0 chr3 7148352 7148373 -210888785 + AT_rich Low_complexity Low_complexity 1 21 0 1805 157 7 20 chr3 7149300 7149600 -210887558 + AluSx SINE Alu 1 296 -16 329 296 53 59 chr3 7150299 7150468 -210886690 + MER5A DNA MER1_type 22 189 0 1802 150 10 20 chr3 7150778 7150911 -210886247 + AluJo SINE Alu 1 134 -178 2209 94 0 70 chr3 7150911 7151242 -210885916 + AluSg SINE Alu 1 308 -2 1802 150 10 20 chr3 7151242 7151401 -210885757 + AluJo SINE Alu 134 290 -22 22 0 0 0 chr3 7152203 7152225 -210884933 + AT_rich Low_complexity Low_complexity 1 22 0 427 193 23 23 chr3 7152337 7152425 -210884733 + L2 LINE L2 3221 3308 -5 1752 137 53 0 chr3 7152504 7152788 -210884370 + AluJb SINE Alu 1 299 -13 1248 104 0 0 chr3 7152878 7153051 -210884107 + AluSp SINE Alu 132 304 -9 187 111 0 0 chr3 7153611 7153638 -210883520 - L2 LINE L2 -19 3294 3268 224 339 58 35 chr3 7153927 7154005 -210883153 + MIR SINE MIR 88 163 -99 1939 121 0 7 chr3 7154005 7154286 -210882872 + AluSg SINE Alu 1 279 -31 224 339 58 35 chr3 7154286 7154378 -210882780 + MIR SINE MIR 163 262 0 1046 166 0 61 chr3 7154578 7154807 -210882351 + AluJo SINE Alu 1 215 -97 285 151 19 0 chr3 7154809 7154862 -210882296 + AluJo SINE Alu 83 136 -166 1527 111 4 25 chr3 7154884 7155128 -210882030 + AluSq SINE Alu 68 306 -7 242 303 121 0 chr3 7155857 7155956 -210881202 - L2 LINE L2 -1 3271 3161 1211 158 63 60 chr3 7156372 7156657 -210880501 + AluJo SINE Alu 23 308 -4 677 159 0 90 chr3 7157136 7157170 -210879988 - MER94 DNA DNA -1 133 98 2091 110 3 13 chr3 7157170 7157469 -210879689 - AluSx SINE Alu -16 296 1 677 159 0 90 chr3 7157469 7157579 -210879579 - MER94 DNA DNA -36 98 2 2198 157 60 35 chr3 7157618 7158070 -210879088 + MLT1C LTR MaLR 5 467 0 2339 107 22 19 chr3 7158193 7158559 -210878599 - L1PA16 LINE L1 0 6166 5800 2067 118 10 0 chr3 7158560 7158856 -210878302 - AluSq SINE Alu -14 299 1 2132 129 0 0 chr3 7159429 7159740 -210877418 + AluSx SINE Alu 1 311 -1 1989 135 0 3 chr3 7159929 7160233 -210876925 + AluSq SINE Alu 1 303 -10 2050 119 14 0 chr3 7160237 7160531 -210876627 + AluSx SINE Alu 1 298 -14 1789 127 3 67 chr3 7161116 7161431 -210875727 + AluSp SINE Alu 1 295 -18 1989 130 13 0 chr3 7161486 7161785 -210875373 + AluSg SINE Alu 1 303 -7 2496 135 46 14 chr3 7162278 7162678 -210874480 - MER65A LTR ERV1 0 445 29 1905 126 0 0 chr3 7162678 7162949 -210874209 - AluSx SINE Alu -41 271 1 2496 135 46 14 chr3 7162949 7162979 -210874179 - MER65A LTR ERV1 -416 29 1 770 170 7 22 chr3 7163014 7163149 -210874009 - FLAM_C SINE Alu 0 133 1 213 227 0 30 chr3 7163227 7163293 -210873865 + GA-rich Low_complexity Low_complexity 4 67 0 345 263 32 0 chr3 7163303 7163398 -210873760 + MER97b DNA MER1_type? 27 124 -929 504 130 6 62 chr3 7163425 7163586 -210873572 + (TCC)n Simple_repeat Simple_repeat 3 154 0 750 138 9 0 chr3 7163592 7163701 -210873457 - FLAM_C SINE Alu -32 111 2 1767 112 6 74 chr3 7163710 7163876 -210873282 - AluSx SINE Alu -21 291 154 2160 78 28 0 chr3 7163876 7164160 -210872998 - AluSg SINE Alu -5 305 14 1767 112 6 74 chr3 7164160 7164305 -210872853 - AluSx SINE Alu -158 154 1 334 191 32 0 chr3 7164309 7164372 -210872786 + MER97a DNA MER1_type? 113 177 -717 877 212 4 100 chr3 7164491 7164732 -210872426 + MER20 DNA MER1_type 2 219 0 363 324 171 0 chr3 7164953 7165123 -210872035 - MIR SINE MIR -12 250 52 803 167 0 14 chr3 7165189 7165327 -210871831 + AluJ SINE Alu 2 137 -175 1014 146 6 0 chr3 7165378 7165549 -210871609 + AluJ SINE Alu 141 312 0 1941 118 24 10 chr3 7165845 7166141 -210871017 - AluSx SINE Alu -12 300 1 1690 171 4 4 chr3 7166381 7166662 -210870496 + AluJb SINE Alu 1 281 -31 22 0 0 0 chr3 7166711 7166733 -210870425 + AT_rich Low_complexity Low_complexity 1 22 0 1318 181 115 0 chr3 7166734 7167022 -210870136 + L1MC2 LINE L1 6002 6322 -22 954 145 0 13 chr3 7167029 7167207 -210869951 - AluSg/x SINE Alu 0 309 134 2254 108 0 0 chr3 7167207 7167514 -210869644 - AluSx SINE Alu -5 307 1 1691 157 13 53 chr3 7167525 7167843 -210869315 - AluSx SINE Alu -7 305 1 449 274 37 22 chr3 7167941 7168066 -210869092 - MIR3 SINE MIR -21 187 58 1922 125 3 27 chr3 7168066 7168363 -210868795 - AluSx SINE Alu -22 290 1 627 197 0 16 chr3 7168572 7168694 -210868464 + FRAM SINE Alu 57 176 0 1831 131 52 3 chr3 7168699 7168989 -210868169 + AluSx SINE Alu 1 304 -8 2070 100 0 0 chr3 7169439 7169718 -210867440 + AluY SINE Alu 1 279 -32 180 0 0 0 chr3 7169720 7169740 -210867418 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 233 213 82 16 chr3 7169807 7169868 -210867290 + LTR8 LTR ERV1 238 302 -389 204 268 52 31 chr3 7170106 7170203 -210866955 - MIR SINE MIR -79 183 85 2104 81 0 32 chr3 7170315 7170624 -210866534 + AluY SINE Alu 12 310 -1 319 276 0 61 chr3 7170678 7170776 -210866382 + L1MC4 LINE L1 6612 6703 -1339 304 205 250 58 chr3 7170764 7170920 -210866238 + L1MC4a LINE L1 5948 6133 -1675 * 2140 121 0 6 chr3 7170951 7171265 -210865893 - AluSx SINE Alu 0 312 1 2213 105 0 0 chr3 7171353 7171648 -210865510 - AluSx SINE Alu -17 295 1 619 307 99 27 chr3 7171695 7171779 -210865379 - L2 LINE L2 -81 3232 3155 1633 157 31 7 chr3 7171779 7172073 -210865085 + AluJo SINE Alu 6 306 -6 619 307 99 27 chr3 7172073 7172444 -210864714 - L2 LINE L2 -158 3155 2739 741 165 8 30 chr3 7172610 7172743 -210864415 + FLAM_C SINE Alu 2 131 -12 324 294 33 11 chr3 7172788 7172880 -210864278 + polypyrimidine Low_complexity Low_complexity 5 98 0 488 239 33 10 chr3 7172884 7173376 -210863782 + CT-rich Low_complexity Low_complexity 1 503 0 1000 230 0 30 chr3 7173479 7173714 -210863444 - AluSq SINE Alu -85 228 1 922 209 90 0 chr3 7173714 7173915 -210863243 - L1MD2 LINE L1 -197 6162 5944 302 245 96 11 chr3 7173915 7174009 -210863149 + MER69 DNA AcHobo 2425 2526 0 1152 94 0 44 chr3 7174291 7174471 -210862687 + AluSc SINE Alu 1 172 -137 181 236 200 18 chr3 7174562 7174617 -210862541 - MIR SINE MIR -160 102 38 189 317 99 49 chr3 7174788 7174930 -210862228 + MIR SINE MIR 3 151 -111 205 298 91 73 chr3 7174987 7175182 -210861976 - MIR SINE MIR -57 205 2 2542 36 0 3 chr3 7175253 7175559 -210861599 + AluY SINE Alu 5 309 -2 1130 118 18 13 chr3 7175559 7175899 -210861259 + MER49 LTR ERV1 152 534 -389 2218 106 3 0 chr3 7175900 7176211 -210860947 - AluSx SINE Alu 0 312 1 1005 86 0 7 chr3 7176213 7176352 -210860806 - AluYb8 SINE Alu -180 138 1 1274 228 59 62 chr3 7176354 7176448 -210860710 + MER49 LTR ERV1 521 614 -309 1993 139 3 3 chr3 7176448 7176758 -210860400 - AluSx SINE Alu -2 310 1 1274 228 59 62 chr3 7176758 7177067 -210860091 + MER49 LTR ERV1 614 923 0 268 152 30 0 chr3 7177176 7177242 -210859916 + (TGAA)n Simple_repeat Simple_repeat 3 70 0 1859 118 21 3 chr3 7178991 7179279 -210857879 - AluSx SINE Alu -19 293 1 865 118 7 29 chr3 7179381 7179517 -210857641 - FLAM_C SINE Alu 0 133 1 1493 158 3 44 chr3 7179575 7179872 -210857286 - AluJo SINE Alu -10 302 18 587 273 126 25 chr3 7180150 7180388 -210856770 + MIR SINE MIR 1 262 0 2154 105 0 0 chr3 7180648 7180944 -210856214 - AluSx SINE Alu -16 296 1 732 144 23 0 chr3 7181007 7181139 -210856019 + L1MA7 LINE L1 6155 6289 -2 422 229 83 57 chr3 7182209 7182366 -210854792 - MIR3 SINE MIR 0 208 48 22 0 0 0 chr3 7182467 7182489 -210854669 + AT_rich Low_complexity Low_complexity 1 22 0 1937 63 0 0 chr3 7182774 7183013 -210854145 + AluY SINE Alu 72 310 -1 1902 94 91 0 chr3 7183019 7183295 -210853863 + AluSg SINE Alu 1 301 -9 24 0 0 0 chr3 7183756 7183780 -210853378 + AT_rich Low_complexity Low_complexity 1 24 0 264 293 113 7 chr3 7183786 7183936 -210853222 - L1ME4a LINE L1 0 6121 5956 303 170 136 78 chr3 7184018 7184260 -210852898 - L1ME4a LINE L1 -286 5835 5538 1177 130 0 0 chr3 7184277 7184454 -210852704 - AluSq SINE Alu -4 309 133 865 184 0 36 chr3 7184662 7184830 -210852328 - AluJ SINE Alu -22 290 129 717 175 0 8 chr3 7184848 7184968 -210852190 + AluJo/FLAM SINE Alu 2 120 -192 2092 137 0 0 chr3 7184968 7185275 -210851883 - AluSx SINE Alu -5 307 1 787 154 0 8 chr3 7185306 7185436 -210851722 - AluJ SINE Alu -173 129 1 1599 135 67 28 chr3 7185646 7185928 -210851230 - AluSx SINE Alu -19 293 1 1754 106 124 4 chr3 7186041 7186316 -210850842 - AluSg SINE Alu -2 308 1 2333 81 0 0 chr3 7186506 7186802 -210850356 - AluSx SINE Alu -16 296 1 1502 181 13 24 chr3 7186987 7187285 -210849873 - AluJo SINE Alu -4 308 14 1913 83 65 7 chr3 7187373 7187650 -210849508 - AluSx SINE Alu -19 293 1 276 256 61 12 chr3 7187718 7187800 -210849358 + L2 LINE L2 3210 3295 -18 189 0 0 0 chr3 7187801 7187822 -210849336 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 335 328 156 16 chr3 7188104 7188232 -210848926 - L2 LINE L2 -1 3271 3126 1319 164 21 52 chr3 7188759 7189046 -210848112 + AluJb SINE Alu 5 282 -30 1891 139 0 3 chr3 7189966 7190260 -210846898 - AluSx SINE Alu -19 293 1 808 165 61 91 chr3 7190395 7190581 -210846577 - AluSg/x SINE Alu -5 305 115 2151 101 0 0 chr3 7190581 7190868 -210846290 - AluSg SINE Alu -23 287 1 374 0 0 21 chr3 7190868 7190915 -210846243 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1945 109 3 3 chr3 7190915 7191199 -210845959 - AluSx SINE Alu -28 284 1 210 37 0 0 chr3 7191199 7191226 -210845932 + (TTA)n Simple_repeat Simple_repeat 3 29 0 808 165 61 91 chr3 7191226 7191266 -210845892 - AluSg/x SINE Alu -191 119 83 389 146 0 0 chr3 7191266 7191321 -210845837 - AluSg/x SINE Alu -52 250 196 320 317 254 5 chr3 7192166 7192371 -210844787 + MIR SINE MIR 1 256 -6 2155 115 3 10 chr3 7192535 7192849 -210844309 - AluSx SINE Alu 0 312 1 799 160 23 0 chr3 7192867 7192998 -210844160 - AluJo SINE Alu -177 135 2 281 210 155 81 chr3 7193477 7193614 -210843544 + MIR SINE MIR 2 146 -62 26 0 0 0 chr3 7194182 7194208 -210842950 + AT_rich Low_complexity Low_complexity 1 26 0 685 83 0 0 chr3 7195097 7195193 -210841965 - AluY SINE Alu -8 303 208 2290 136 5 35 chr3 7195289 7195664 -210841494 + THE1B LTR MaLR 1 364 0 2179 304 39 43 chr3 7196572 7197800 -210839358 - HERVI LTR ERV1 -138 7647 6425 5328 310 45 47 chr3 7198692 7202138 -210835020 - HERVI LTR ERV1 -2029 5756 2139 3213 55 43 5 chr3 7202138 7202559 -210834599 - L1PA5 LINE L1 -1 6153 5717 5328 310 45 47 chr3 7202559 7203510 -210833648 - HERVI LTR ERV1 -5646 2139 1187 1402 222 113 44 chr3 7205181 7205296 -210831862 - L1MDa LINE L1 -2480 4060 3954 2209 106 0 0 chr3 7205296 7205610 -210831548 + AluSx SINE Alu 1 314 0 2153 113 0 0 chr3 7205616 7205924 -210831234 + AluSx SINE Alu 1 308 0 1402 222 113 44 chr3 7205924 7206411 -210830747 - L1MDa LINE L1 -2590 3950 3407 1049 158 0 0 chr3 7206411 7206563 -210830595 + FRAM SINE Alu 1 151 -25 2131 203 95 98 chr3 7206564 7206846 -210830312 - L1MDa LINE L1 -3120 3420 3138 1296 199 65 43 chr3 7206846 7207123 -210830035 - AluJb SINE Alu -17 285 3 2131 203 95 98 chr3 7207123 7207628 -210829530 - L1MDa LINE L1 -3402 3138 2633 1569 187 4 4 chr3 7207628 7207896 -210829262 - AluJo SINE Alu -39 273 6 2131 203 95 98 chr3 7207896 7208330 -210828828 - L1MDa LINE L1 -3907 2633 2199 2183 147 28 22 chr3 7208330 7208691 -210828467 + THE1B LTR MaLR 1 363 -1 2131 203 95 98 chr3 7208691 7209427 -210827731 - L1MDa LINE L1 -4341 2199 1469 1384 134 5 9 chr3 7209456 7209672 -210827486 - AluSg/x SINE Alu -16 296 82 859 149 63 11 chr3 7209677 7209852 -210827306 - L1MB3 LINE L1 -51 6132 5949 1658 127 0 80 chr3 7209854 7210153 -210827005 - AluSx SINE Alu -37 275 1 4866 156 35 41 chr3 7210153 7211028 -210826130 - L1M4c LINE L1 -4608 1776 908 1949 154 0 0 chr3 7211028 7211321 -210825837 - AluSx SINE Alu -19 293 1 4866 156 35 41 chr3 7211321 7211508 -210825650 - L1M4c LINE L1 -5476 908 721 2104 118 3 37 chr3 7211511 7211834 -210825324 - AluSx SINE Alu 0 312 1 1059 119 0 92 chr3 7211839 7212024 -210825134 - AluSx SINE Alu -144 168 1 244 327 18 30 chr3 7212160 7212328 -210824830 - L1MDa LINE L1 -5511 1019 854 284 363 18 33 chr3 7212879 7213091 -210824067 - L1MDa LINE L1 -6223 317 108 1954 132 3 32 chr3 7213091 7213401 -210823757 - AluSx SINE Alu -11 301 1 284 363 18 33 chr3 7213401 7213461 -210823697 - L1MDa LINE L1 -6432 108 49 690 315 17 9 chr3 7213519 7213751 -210823407 - MIR SINE MIR -17 245 12 805 96 0 0 chr3 7214101 7214205 -210822953 + AluJb SINE Alu 7 110 -202 291 128 0 21 chr3 7214209 7214256 -210822902 - AluSp SINE Alu -141 162 117 1174 152 11 11 chr3 7214257 7214440 -210822718 + AluJb SINE Alu 122 307 -5 2489 90 3 0 chr3 7214440 7214751 -210822407 + AluSp SINE Alu 2 313 0 1184 186 53 56 chr3 7216033 7216318 -210820840 - AluJo SINE Alu -23 289 6 210 282 0 0 chr3 7216801 7216840 -210820318 - MIR SINE MIR -133 75 37 185 306 69 14 chr3 7216919 7216991 -210820167 + L2 LINE L2 3019 3094 -219 1234 175 45 65 chr3 7217881 7218104 -210819054 - L1PA16 LINE L1 -6 6160 5943 2141 119 3 0 chr3 7218104 7218397 -210818761 - AluSx SINE Alu -12 300 7 1234 175 45 65 chr3 7218397 7218465 -210818693 - L1PA16 LINE L1 -223 5943 5875 2216 98 0 7 chr3 7218704 7218999 -210818159 + AluSx SINE Alu 2 294 -18 1306 162 43 43 chr3 7219101 7219336 -210817822 + MER8 DNA MER2_type 4 238 -1 1697 235 92 74 chr3 7219533 7220326 -210816832 - L1MC4 LINE L1 -1 8041 7235 2279 105 0 0 chr3 7221159 7221454 -210815704 - AluSc SINE Alu -14 295 1 1983 104 45 3 chr3 7221465 7221754 -210815404 - AluSx SINE Alu -11 301 1 417 264 162 0 chr3 7222072 7222220 -210814938 - MIR3 SINE MIR -4 204 33 346 171 100 0 chr3 7222412 7222482 -210814676 + Tigger7 DNA MER2_type 1 77 -473 1092 101 0 0 chr3 7222501 7222649 -210814509 + Tigger7 DNA MER2_type 2339 2486 -1 516 264 21 7 chr3 7222707 7222847 -210814311 + MIR SINE MIR 73 214 -48 1461 186 13 68 chr3 7223180 7223487 -210813671 - AluJb SINE Alu -22 290 1 191 303 61 15 chr3 7223771 7223837 -210813321 - MIR3 SINE MIR -29 179 111 21 71 0 0 chr3 7224061 7224103 -210813055 + AT_rich Low_complexity Low_complexity 1 42 0 827 176 42 18 chr3 7224188 7224353 -210812805 - L1MB3 LINE L1 -1 6182 6014 1605 194 7 18 chr3 7224359 7224414 -210812744 - L1MB3 LINE L1 -205 5966 5912 393 39 0 0 chr3 7224414 7224465 -210812693 + (TG)n Simple_repeat Simple_repeat 1 51 0 1605 194 7 18 chr3 7224465 7224825 -210812333 - L1MB3 LINE L1 -259 5912 5350 2009 138 6 6 chr3 7225833 7226145 -210811013 - AluSx SINE Alu 0 312 1 2139 95 18 7 chr3 7226458 7226761 -210810397 - AluSq SINE Alu 0 306 1 492 307 81 45 chr3 7228046 7228378 -210808780 - L2 LINE L2 -18 3295 2952 690 120 88 16 chr3 7228429 7228554 -210808604 + MER46A DNA MER2_type 103 236 0 1942 58 81 0 chr3 7228575 7228865 -210808293 + AluY SINE Alu 2 312 0 238 274 0 0 chr3 7229698 7229749 -210807409 + MER6B DNA MER2_type 2 52 -224 539 74 98 0 chr3 7229770 7229933 -210807225 + (TA)n Simple_repeat Simple_repeat 2 180 0 1920 122 15 0 chr3 7229936 7230207 -210806951 - AluSx SINE Alu -24 288 14 874 153 127 0 chr3 7230257 7230407 -210806751 + MER6B DNA MER2_type 37 205 -5 1818 192 68 21 chr3 7230690 7231118 -210806040 - MLT1C LTR MaLR -2 465 18 2156 125 0 3 chr3 7231347 7231651 -210805507 - AluSx SINE Alu -9 303 1 1152 149 123 0 chr3 7231942 7232137 -210805021 + MER20 DNA MER1_type 1 219 0 2344 70 13 0 chr3 7232575 7232873 -210804285 - AluSq SINE Alu -11 302 1 189 0 0 0 chr3 7233470 7233491 -210803667 + (T)n Simple_repeat Simple_repeat 1 21 0 22 35 0 0 chr3 7234819 7234848 -210802310 + AT_rich Low_complexity Low_complexity 1 29 0 371 266 107 35 chr3 7237463 7237632 -210799526 + MIR3 SINE MIR 22 202 -6 2141 86 41 3 chr3 7238028 7238318 -210798840 - AluY SINE Alu -10 301 1 2025 124 14 0 chr3 7238875 7239166 -210797992 - AluSx SINE Alu -16 296 2 841 187 211 32 chr3 7239179 7239577 -210797581 + LTR54B LTR ERV1 2 510 0 426 254 59 0 chr3 7239658 7239776 -210797382 - FAM SINE Alu -26 159 35 231 235 39 0 chr3 7239784 7239835 -210797323 - L1MC/D LINE L1 -2305 5503 5451 1947 134 10 3 chr3 7239901 7240193 -210796965 - AluSx SINE Alu -18 294 1 482 220 197 34 chr3 7240238 7240441 -210796717 - MIR SINE MIR -25 237 17 22 56 0 0 chr3 7242683 7242719 -210794439 + GC_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr3 7243236 7243259 -210793899 + GC_rich Low_complexity Low_complexity 1 23 0 309 283 143 87 chr3 7243365 7243687 -210793471 + L1M2 LINE L1 630 969 -5880 2344 67 3 0 chr3 7244721 7245018 -210792140 - AluY SINE Alu -13 298 1 31 0 0 0 chr3 7245976 7246007 -210791151 + AT_rich Low_complexity Low_complexity 1 31 0 1761 86 9 0 chr3 7246007 7246240 -210790918 - L1MA2 LINE L1 0 6304 6070 1916 144 0 34 chr3 7246329 7246649 -210790509 - AluJo SINE Alu -3 309 1 21 0 0 0 chr3 7248034 7248055 -210789103 + AT_rich Low_complexity Low_complexity 1 21 0 2446 84 0 0 chr3 7248717 7249014 -210788144 - AluSq SINE Alu -16 297 1 2025 121 0 0 chr3 7251291 7251572 -210785586 + AluSx SINE Alu 1 281 -31 207 0 0 0 chr3 7251578 7251601 -210785557 + (CA)n Simple_repeat Simple_repeat 2 24 0 221 222 79 32 chr3 7251660 7251723 -210785435 - MIR3 SINE MIR -14 194 129 822 110 17 0 chr3 7252061 7252179 -210784979 - AluSc SINE Alu -26 283 164 201 171 0 0 chr3 7252180 7252215 -210784943 + T-rich Low_complexity Low_complexity 1 35 0 281 219 110 24 chr3 7252237 7252319 -210784839 + L2 LINE L2 3184 3272 0 445 271 7 52 chr3 7252378 7252533 -210784625 - MER103 DNA DNA 0 166 19 1984 154 52 12 chr3 7253997 7254327 -210782831 - MER61A LTR ERV1 0 343 1 840 133 7 53 chr3 7254374 7254525 -210782633 + MLT1B LTR MaLR 239 382 -8 3127 186 25 21 chr3 7254704 7255264 -210781894 - MER68 LTR ERV1 0 562 1 2093 141 3 0 chr3 7255628 7255925 -210781233 - AluJb SINE Alu -14 298 1 234 261 45 81 chr3 7255936 7256047 -210781111 + L2 LINE L2 3199 3305 -8 393 308 60 8 chr3 7256878 7257011 -210780147 - MIR3 SINE MIR -48 160 21 377 245 133 10 chr3 7257401 7257499 -210779659 + L2 LINE L2 3188 3297 -16 2092 158 29 8 chr3 7257507 7257887 -210779271 + MLT1B LTR MaLR 3 390 0 419 257 13 72 chr3 7258664 7258816 -210778342 + MIR SINE MIR 77 219 -43 289 0 148 0 chr3 7258912 7258973 -210778185 + A-rich Low_complexity Low_complexity 6 75 0 389 313 0 0 chr3 7258982 7259081 -210778077 + MIR SINE MIR 34 132 -76 309 289 86 16 chr3 7259584 7259712 -210777446 - L3 LINE CR1 -307 1270 1134 288 263 79 94 chr3 7260509 7260724 -210776434 + MIR SINE MIR 1 218 -44 953 92 0 241 chr3 7260724 7260901 -210776257 + MER5A DNA MER1_type 1 219 30 348 24 0 0 chr3 7260901 7260942 -210776216 + (TG)n Simple_repeat Simple_repeat 2 42 0 2171 120 0 3 chr3 7260947 7261246 -210775912 - AluSx SINE Alu -14 298 1 953 92 0 241 chr3 7261246 7261311 -210775847 + MER5A DNA MER1_type 110 189 0 288 263 79 94 chr3 7261311 7261361 -210775797 + MIR SINE MIR 218 262 0 1606 190 16 29 chr3 7261608 7261924 -210775234 + AluJb SINE Alu 1 312 0 201 304 14 87 chr3 7262048 7262117 -210775041 - L2 LINE L2 -9 3263 3200 773 292 33 17 chr3 7262207 7262447 -210774711 - MIR SINE MIR -1 261 18 467 273 60 105 chr3 7262535 7262887 -210774271 + MLT1I LTR MaLR 74 409 0 2108 115 7 23 chr3 7263015 7263320 -210773838 - AluSx SINE Alu -10 302 3 210 313 0 0 chr3 7264379 7264446 -210772712 + MIR SINE MIR 81 147 -115 239 197 211 14 chr3 7264450 7264521 -210772637 - L2 LINE L2 -2 3311 3227 678 264 73 67 chr3 7264719 7264966 -210772192 - L2 LINE L2 -348 2966 2715 1496 190 48 7 chr3 7264966 7265256 -210771902 - AluJo SINE Alu -10 302 1 678 264 73 67 chr3 7265256 7265352 -210771806 - L2 LINE L2 -599 2715 2621 861 256 106 57 chr3 7265631 7265733 -210771425 - LTR33A LTR ERVL -6 517 421 1954 146 3 0 chr3 7265733 7266027 -210771131 + AluSx SINE Alu 1 295 -17 861 256 106 57 chr3 7266027 7266416 -210770742 - LTR33A LTR ERVL -102 421 2 244 327 55 110 chr3 7267477 7267741 -210769417 - L2 LINE L2 -1 3271 3049 2332 93 3 0 chr3 7267741 7268032 -210769126 - AluSx SINE Alu -20 292 1 244 327 55 110 chr3 7268032 7268290 -210768868 - L2 LINE L2 -223 3049 2779 976 318 130 16 chr3 7268368 7268859 -210768299 - L3 LINE CR1 -188 1389 843 684 266 89 10 chr3 7269157 7269360 -210767798 + MIR SINE MIR 39 257 -5 260 357 9 0 chr3 7269375 7269487 -210767671 - MIR SINE MIR -10 252 140 294 217 39 163 chr3 7270785 7270914 -210766244 + L2 LINE L2 3182 3294 -19 315 279 130 0 chr3 7270978 7271139 -210766019 - MIR SINE MIR 0 262 81 629 246 82 75 chr3 7271685 7271966 -210765192 - MLT1K LTR MaLR -2 586 304 265 265 47 82 chr3 7271970 7272140 -210765018 - MLT1J2 LTR MaLR 0 450 287 248 323 0 0 chr3 7272433 7272495 -210764663 - MLT1K LTR MaLR -347 241 180 1442 257 73 35 chr3 7272511 7272910 -210764248 - L2 LINE L2 -2 3311 2929 1675 188 27 48 chr3 7272910 7273283 -210763875 + MLT1A1 LTR MaLR 1 365 0 1442 257 73 35 chr3 7273283 7273632 -210763526 - L2 LINE L2 -384 2929 2526 300 345 67 8 chr3 7273635 7273754 -210763404 - MLT1K LTR MaLR -401 187 62 376 298 35 0 chr3 7273786 7273900 -210763258 - MLT1I LTR MaLR -4 405 288 1210 213 30 4 chr3 7273988 7274350 -210762808 - MER74A LTR ERVL -90 468 14 721 167 25 0 chr3 7274354 7274474 -210762684 + FAM SINE Alu 1 40 -9 415 291 15 65 chr3 7274516 7274715 -210762443 - MLT1I LTR MaLR -141 268 80 1201 210 258 76 chr3 7275024 7275525 -210761633 - MLT1G1 LTR MaLR -1 594 3 195 288 61 0 chr3 7275613 7275679 -210761479 + L2 LINE L2 3154 3223 -49 1304 264 124 30 chr3 7275725 7276251 -210760907 + MLT1L LTR MaLR 41 615 0 277 211 67 96 chr3 7277042 7277229 -210759929 - LOR1a LTR ERV1 0 603 310 477 0 0 0 chr3 7277474 7277527 -210759631 + (CA)n Simple_repeat Simple_repeat 2 54 0 249 293 211 48 chr3 7277800 7277947 -210759211 + MLT1K LTR MaLR 350 520 -68 1868 172 0 10 chr3 7278473 7278787 -210758371 - AluSx SINE Alu -1 311 1 552 272 0 0 chr3 7278889 7279003 -210758155 + MER81 DNA DNA 1 114 0 368 289 44 0 chr3 7279036 7279126 -210758032 - L2 LINE L2 -17 3255 3162 1380 235 102 40 chr3 7279365 7279722 -210757436 + LTR16A1 LTR ERVL 1 391 -66 2111 163 10 61 chr3 7279722 7280133 -210757025 + MLT1B LTR MaLR 1 390 0 1380 235 102 40 chr3 7280133 7280205 -210756953 + LTR16A1 LTR ERVL 391 457 0 4316 84 14 9 chr3 7280659 7281230 -210755928 + L1PA10 LINE L1 5592 6165 -3 339 258 31 69 chr3 7281272 7281431 -210755727 + MIR SINE MIR 109 261 -1 349 143 0 0 chr3 7281515 7281571 -210755587 - MER63 DNA MER1_type -36 1025 970 303 219 41 0 chr3 7281590 7281663 -210755495 - MER63 DNA MER1_type -128 708 7 6002 41 0 3 chr3 7281970 7282652 -210754506 - L1PA5 LINE L1 -1 6153 5474 437 69 0 0 chr3 7282654 7282712 -210754446 + L1P2 LINE L1 3697 3754 -2392 6638 33 0 0 chr3 7282844 7283727 -210753431 + L1P2 LINE L1 4603 5485 -669 217 297 55 22 chr3 7283879 7283970 -210753188 + MIR3 SINE MIR 101 194 -14 225 359 60 17 chr3 7283996 7284113 -210753045 + L2 LINE L2 3141 3262 -10 840 102 0 121 chr3 7284616 7284782 -210752376 - THE1C LTR MaLR 0 375 230 2278 78 7 0 chr3 7284783 7285079 -210752079 - AluY SINE Alu -13 298 1 1983 104 45 3 chr3 7285090 7285379 -210751779 - AluSx SINE Alu -11 301 1 417 264 162 0 chr3 7285697 7285845 -210751313 - MIR3 SINE MIR -4 204 33 346 171 100 0 chr3 7286037 7286107 -210751051 + Tigger7 DNA MER2_type 1 77 -473 1092 101 0 0 chr3 7286126 7286274 -210750884 + Tigger7 DNA MER2_type 2343 2490 -1 516 264 21 7 chr3 7286332 7286472 -210750686 + MIR SINE MIR 73 214 -48 1461 186 13 68 chr3 7286805 7287112 -210750046 - AluJb SINE Alu -22 290 1 191 303 61 15 chr3 7287397 7287463 -210749695 - MIR3 SINE MIR -29 179 111 21 71 0 0 chr3 7287687 7287729 -210749429 + AT_rich Low_complexity Low_complexity 1 42 0 878 174 30 18 chr3 7287814 7287981 -210749177 - L1MB3 LINE L1 -1 6182 6014 1605 194 7 18 chr3 7287987 7288042 -210749116 - L1MB3 LINE L1 -205 5966 5912 393 39 0 0 chr3 7288042 7288093 -210749065 + (TG)n Simple_repeat Simple_repeat 1 51 0 1605 194 7 18 chr3 7288093 7288453 -210748705 - L1MB3 LINE L1 -259 5912 5350 1924 143 7 7 chr3 7289472 7289773 -210747385 - AluSx SINE Alu -11 301 1 2139 95 18 7 chr3 7290087 7290390 -210746768 - AluSq SINE Alu 0 306 1 431 289 84 66 chr3 7291673 7292054 -210745104 - L2 LINE L2 -18 3295 2908 2457 102 12 86 chr3 7292217 7292327 -210744831 - MER4A LTR ERV1 -172 492 375 2035 128 3 13 chr3 7292327 7292633 -210744525 - AluSx SINE Alu -9 303 1 2457 102 12 86 chr3 7292633 7293094 -210744064 - MER4A LTR ERV1 -289 375 1 2065 121 28 0 chr3 7294225 7294514 -210742644 - AluSx SINE Alu -13 299 3 291 268 97 48 chr3 7294642 7294911 -210742247 - L1ME4a LINE L1 -73 6048 5767 24 32 0 0 chr3 7295152 7295183 -210741975 + AT_rich Low_complexity Low_complexity 1 31 0 1125 138 29 0 chr3 7295183 7295357 -210741801 - AluJb SINE Alu -13 299 121 1485 181 42 21 chr3 7295447 7295734 -210741424 - AluJo SINE Alu -19 293 1 268 180 67 90 chr3 7297903 7297992 -210739166 - L1MC5 LINE L1 -44 7917 7831 1683 189 7 3 chr3 7298014 7298316 -210738842 - AluJb SINE Alu -9 303 1 21 57 0 0 chr3 7298511 7298546 -210738612 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 7298622 7298645 -210738513 + AT_rich Low_complexity Low_complexity 1 23 0 1774 158 0 55 chr3 7298646 7298976 -210738182 - AluJb SINE Alu 0 312 1 229 296 25 12 chr3 7298998 7299079 -210738079 - L1ME4a LINE L1 -463 5658 5577 1629 214 81 29 chr3 7299683 7300215 -210736943 - MLT1F1 LTR MaLR 0 567 2 2346 97 0 0 chr3 7300491 7300790 -210736368 - AluSg SINE Alu -11 299 1 2107 123 0 3 chr3 7301783 7302092 -210735066 - AluSx SINE Alu -4 308 1 332 180 0 0 chr3 7303444 7303505 -210733653 - MLT2B1 LTR ERVL -4 516 456 * 1570 206 81 22 chr3 7303504 7303876 -210733282 - MLT2D LTR ERVL -20 534 1 5495 167 23 13 chr3 7304327 7305790 -210731368 + L1P5 LINE L1 4129 5608 -543 2430 77 0 3 chr3 7305790 7306089 -210731069 + AluY SINE Alu 1 298 -13 5495 167 23 13 chr3 7306089 7306253 -210730905 + L1P5 LINE L1 5608 5769 -382 991 337 33 19 chr3 7306661 7306714 -210730444 + L1M3c LINE L1 959 1010 -6088 198 0 0 0 chr3 7306714 7306736 -210730422 + (CA)n Simple_repeat Simple_repeat 1 22 0 991 337 33 19 chr3 7306736 7307109 -210730049 + L1M3c LINE L1 1010 1391 -5707 225 283 92 33 chr3 7307269 7307389 -210729769 + L1M3c LINE L1 1681 1807 -5361 3270 247 110 22 chr3 7307918 7308374 -210728784 + L1M3c LINE L1 1902 2316 -4851 7800 51 6 10 chr3 7308374 7309915 -210727243 + SVA Other Other 7 1385 -1 3270 247 110 22 chr3 7309915 7311720 -210725438 + L1M3c LINE L1 2316 3990 -3177 1809 162 3 17 chr3 7311720 7312010 -210725148 + AluJb SINE Alu 5 290 -22 3270 247 110 22 chr3 7312010 7312170 -210724988 + L1M3c LINE L1 3990 4134 -3033 1164 197 92 4 chr3 7312170 7312409 -210724749 + AluJo SINE Alu 1 260 -52 449 117 57 0 chr3 7312465 7312548 -210724610 - L1M2 LINE L1 -4352 1683 1346 6194 177 29 7 chr3 7312586 7313810 -210723348 + L1M3c LINE L1 4125 5375 -1792 1793 285 18 7 chr3 7313842 7314361 -210722797 - L1M2 LINE L1 -5251 704 1 227 317 45 22 chr3 7314463 7314687 -210722471 - L1M4 LINE L1 -3065 3081 2853 371 262 0 48 chr3 7315051 7315154 -210722004 + MIR SINE MIR 44 141 -67 282 253 121 96 chr3 7315392 7315590 -210721568 + MIR SINE MIR 19 221 -41 1137 130 6 0 chr3 7316321 7316490 -210720668 + AluSg/x SINE Alu 131 300 -10 1083 256 108 42 chr3 7317006 7317439 -210719719 + MLT1C LTR MaLR 5 466 -1 384 132 40 53 chr3 7317508 7317584 -210719574 - LTR65 LTR ERV1 -256 413 339 381 312 85 0 chr3 7318309 7318450 -210718708 + Charlie8 DNA MER1_type 113 265 -2152 2188 186 9 30 chr3 7318586 7319015 -210718143 - MLT1E2 LTR MaLR 0 626 207 3497 98 11 7 chr3 7319084 7319534 -210717624 - MLT2A2 LTR ERVL 0 453 2 1251 238 19 7 chr3 7319541 7319848 -210717310 + L1ME2 LINE L1 5840 6150 -14 195 42 0 0 chr3 7319875 7319899 -210717259 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1607 192 6 41 chr3 7319952 7320269 -210716889 + AluJo SINE Alu 1 306 -6 22 0 0 0 chr3 7320898 7320920 -210716238 + AT_rich Low_complexity Low_complexity 1 22 0 293 324 22 7 chr3 7320983 7321119 -210716039 + MIR3 SINE MIR 57 194 -14 1292 212 33 29 chr3 7321204 7321510 -210715648 - MER58B DNA MER1_type 0 341 35 340 290 145 32 chr3 7321756 7322004 -210715154 + MLT1J LTR MaLR 1 276 -273 1533 286 82 8 chr3 7322117 7322593 -210714565 + MLT1E LTR MaLR 3 513 -80 470 216 22 65 chr3 7322641 7322780 -210714378 + MLT1J LTR MaLR 379 511 0 1797 147 3 20 chr3 7323135 7323428 -210713730 + AluSx SINE Alu 13 300 -12 281 275 57 9 chr3 7324763 7324877 -210712281 + MIR SINE MIR 36 154 -59 721 205 98 48 chr3 7324878 7325198 -210711960 - LTR37B LTR ERV1 0 468 125 796 220 43 0 chr3 7325288 7325502 -210711656 + MER58C DNA MER1_type 12 215 0 321 284 22 37 chr3 7326513 7326647 -210710511 + Charlie8 DNA MER1_type 61 192 -2225 291 215 11 108 chr3 7326663 7326729 -210710429 + MER5A DNA MER1_type 9 65 -124 2132 124 3 10 chr3 7326729 7327035 -210710123 + AluSx SINE Alu 1 304 -8 291 215 11 108 chr3 7327035 7327061 -210710097 + MER5A DNA MER1_type 65 92 -97 185 302 0 0 chr3 7327439 7327482 -210709676 + L2 LINE L2 3218 3260 -12 266 234 13 78 chr3 7327555 7327632 -210709526 + L2 LINE L2 3175 3246 -26 181 325 149 9 chr3 7327715 7327829 -210709329 - L2 LINE L2 -14 3299 3170 261 161 77 51 chr3 7327900 7327992 -210709166 - MLT1H LTR MaLR -18 572 281 346 192 51 0 chr3 7328056 7328134 -210709024 - MLT1H LTR MaLR -229 320 239 2239 111 16 3 chr3 7328167 7328474 -210708684 + AluSx SINE Alu 1 311 -1 531 288 18 12 chr3 7328811 7328974 -210708184 - MLT1H LTR MaLR -374 175 12 491 274 39 17 chr3 7329146 7329325 -210707833 - MIR SINE MIR -3 259 77 246 250 0 0 chr3 7330224 7330284 -210706874 + A-rich Low_complexity Low_complexity 1 60 0 448 290 33 49 chr3 7330305 7330488 -210706670 + MER117 DNA MER1_type 2 181 -16 1564 164 53 37 chr3 7330629 7330928 -210706230 + AluJo SINE Alu 1 304 -8 1554 196 39 0 chr3 7330949 7331235 -210705923 + AluJo SINE Alu 11 307 -5 233 169 0 84 chr3 7331866 7331937 -210705221 + T-rich Low_complexity Low_complexity 3 67 0 267 114 0 0 chr3 7331939 7331983 -210705175 + (TTCC)n Simple_repeat Simple_repeat 4 47 0 1847 153 33 0 chr3 7331983 7332304 -210704854 - AluJb SINE Alu 0 331 1 893 208 133 123 chr3 7332661 7333232 -210703926 - LTR8A LTR ERV1 -150 577 1 2022 115 11 0 chr3 7333348 7333707 -210703451 + AluSg SINE Alu 1 362 0 2230 121 3 0 chr3 7333771 7334069 -210703089 + AluSx SINE Alu 1 299 -13 1688 159 41 14 chr3 7334756 7335046 -210702112 + AluJo SINE Alu 1 298 -14 2361 64 0 3 chr3 7335149 7335458 -210701700 + AluY SINE Alu 1 308 0 1788 174 0 17 chr3 7335462 7335760 -210701398 + AluJb SINE Alu 1 293 -19 1080 114 27 0 chr3 7335975 7336124 -210701034 - AluSg/x SINE Alu -16 296 144 1092 266 58 0 chr3 7336124 7336432 -210700726 - MLT1B LTR MaLR -63 327 2 976 275 135 26 chr3 7336898 7337284 -210699874 - L2 LINE L2 0 3313 2886 533 267 0 8 chr3 7337288 7337419 -210699739 - AluJb SINE Alu -1 311 182 2118 229 66 57 chr3 7337434 7338044 -210699114 + MLT1E2 LTR MaLR 10 624 -2 531 273 50 0 chr3 7338076 7338237 -210698921 - L2 LINE L2 -420 2894 2726 269 318 95 0 chr3 7339575 7339701 -210697457 + MIR SINE MIR 117 254 -8 1924 168 10 0 chr3 7339912 7340222 -210696936 + 7SLRNA srpRNA srpRNA 1 313 -7 388 238 277 43 chr3 7340346 7340602 -210696556 - L2 LINE L2 -4 3309 2994 335 321 37 0 chr3 7340959 7341093 -210696065 - MIR SINE MIR 0 262 124 371 290 80 71 chr3 7341173 7341264 -210695894 + L3 LINE CR1 1115 1204 -373 2060 134 0 0 chr3 7341264 7341554 -210695604 + AluSx SINE Alu 1 290 -22 371 290 80 71 chr3 7341554 7341700 -210695458 + L3 LINE CR1 1204 1354 -223 350 264 38 9 chr3 7341701 7341807 -210695351 + LTR16A1 LTR ERVL 11 119 -338 234 0 0 0 chr3 7342007 7342033 -210695125 + (CAGG)n Simple_repeat Simple_repeat 1 26 0 2496 43 7 0 chr3 7343125 7343430 -210693728 - AluY SINE Alu -4 307 1 280 157 0 0 chr3 7343499 7343550 -210693608 - L1MB8 LINE L1 -4 6174 6124 1438 171 144 4 chr3 7343564 7343827 -210693331 - AluSg SINE Alu 0 300 1 22 0 0 0 chr3 7343827 7343849 -210693309 + AT_rich Low_complexity Low_complexity 1 22 0 2359 147 34 0 chr3 7343849 7344202 -210692956 - L1PA16 LINE L1 -9 6157 5793 322 132 38 0 chr3 7344202 7344255 -210692903 - L1MB8 LINE L1 -41 6137 6083 213 39 0 0 chr3 7344779 7344805 -210692353 + (CA)n Simple_repeat Simple_repeat 2 27 0 293 206 88 49 chr3 7344922 7345024 -210692134 + MER5A DNA MER1_type 81 186 -3 238 115 39 0 chr3 7345414 7345466 -210691692 + (CA)n Simple_repeat Simple_repeat 1 54 0 299 117 33 0 chr3 7345557 7345617 -210691541 + MER53 DNA DNA 3 64 -125 229 247 59 0 chr3 7345616 7345701 -210691457 - MER53 DNA DNA -89 100 11 * 1797 128 139 0 chr3 7345907 7346181 -210690977 - AluSx SINE Alu 0 312 1 24 0 0 0 chr3 7346187 7346211 -210690947 + AT_rich Low_complexity Low_complexity 1 24 0 202 267 0 0 chr3 7346453 7346498 -210690660 + MER91 DNA MER1_type 1 45 -151 1466 235 102 55 chr3 7346814 7347304 -210689854 + MLT1G LTR MaLR 8 520 -70 7572 58 3 3 chr3 7347840 7349328 -210687830 - L1PA7 LINE L1 0 6154 4668 4838 79 10 22 chr3 7349593 7350761 -210686397 + SVA Other Other 1 1386 0 22 70 0 0 chr3 7351148 7351191 -210685967 + AT_rich Low_complexity Low_complexity 1 43 0 708 219 8 0 chr3 7351260 7351379 -210685779 + FLAM_A SINE Alu 1 120 -13 294 282 39 19 chr3 7351918 7352021 -210685137 + MIR3 SINE MIR 54 158 -50 615 247 14 0 chr3 7352125 7352271 -210684887 - MER103 DNA DNA 0 166 19 2340 107 0 0 chr3 7352607 7352906 -210684252 + AluSx SINE Alu 1 299 -13 346 222 25 0 chr3 7353209 7353290 -210683868 + MER117 DNA MER1_type 75 157 -40 992 60 26 27 chr3 7353439 7353952 -210683206 + (TG)n Simple_repeat Simple_repeat 1 512 0 669 228 39 22 chr3 7354580 7354760 -210682398 + MER3 DNA MER1_type 1 183 -26 283 301 67 46 chr3 7354971 7355210 -210681948 + L2 LINE L2 2734 2977 -337 2508 59 0 3 chr3 7355279 7355583 -210681575 + AluY SINE Alu 1 303 -8 2083 100 4 0 chr3 7355592 7355872 -210681286 + AluSx SINE Alu 2 282 -30 459 0 0 0 chr3 7355875 7355926 -210681232 + (CATA)n Simple_repeat Simple_repeat 2 52 0 948 236 75 77 chr3 7356044 7356497 -210680661 - MER110A LTR ERV1 -14 454 3 278 301 68 62 chr3 7356526 7356554 -210680604 + L2 LINE L2 3166 3192 -121 354 23 0 0 chr3 7356554 7356597 -210680561 + (TC)n Simple_repeat Simple_repeat 2 44 0 278 301 68 62 chr3 7356597 7356714 -210680444 + L2 LINE L2 3192 3312 -1 333 295 19 9 chr3 7357485 7357590 -210679568 - MLT1K LTR MaLR -6 582 477 794 254 11 0 chr3 7357963 7358140 -210679018 + MER5A DNA MER1_type 3 181 -8 1960 154 0 0 chr3 7358400 7358699 -210678459 - AluSx SINE Alu -13 299 1 1172 98 0 0 chr3 7358725 7358888 -210678270 - AluYa5 SINE Alu -16 295 133 2563 40 0 0 chr3 7358888 7359190 -210677968 - AluYb8 SINE Alu -16 302 1 299 269 172 27 chr3 7359198 7359384 -210677774 + L1ME4a LINE L1 5682 5894 -227 1011 243 109 76 chr3 7359417 7359584 -210677574 - MLT1F1 LTR MaLR -1 566 406 1506 136 81 0 chr3 7359584 7359820 -210677338 + AluSx SINE Alu 44 298 -14 1011 243 109 76 chr3 7359820 7360097 -210677061 - MLT1F1 LTR MaLR -161 406 104 266 333 11 0 chr3 7360218 7360308 -210676850 - MLT1F1 LTR MaLR -498 95 5 669 227 0 0 chr3 7360878 7360997 -210676161 + FLAM_A SINE Alu 5 123 -10 798 267 89 71 chr3 7362139 7362204 -210674954 - MLT1K LTR MaLR -63 525 463 3531 126 4 28 chr3 7362204 7362744 -210674414 - MER1A DNA MER1_type 0 527 1 798 267 89 71 chr3 7362744 7363071 -210674087 - MLT1K LTR MaLR -125 463 126 287 204 21 0 chr3 7363290 7363383 -210673775 + (TTCA)n Simple_repeat Simple_repeat 3 97 0 292 225 113 0 chr3 7363415 7363486 -210673672 + L2 LINE L2 3194 3272 0 2670 120 31 2 chr3 7363503 7363919 -210673239 - MSTA LTR MaLR 0 428 1 520 171 202 0 chr3 7364159 7364288 -210672870 - MER5A DNA MER1_type -29 160 6 479 233 133 13 chr3 7364808 7364958 -210672200 - MIR SINE MIR -74 188 21 880 175 23 0 chr3 7365412 7365583 -210671575 - FRAM SINE Alu -1 175 1 2009 123 0 3 chr3 7366577 7366886 -210670272 - AluSx SINE Alu -4 308 1 213 189 0 0 chr3 7367813 7367850 -210669308 + (TG)n Simple_repeat Simple_repeat 2 38 0 446 271 7 52 chr3 7368341 7368496 -210668662 + MER103 DNA DNA 19 166 0 292 219 110 24 chr3 7368555 7368637 -210668521 - L2 LINE L2 0 3272 3184 913 105 14 0 chr3 7368695 7368838 -210668320 + AluSc SINE Alu 164 308 -1 228 222 79 32 chr3 7369152 7369215 -210667943 + MIR3 SINE MIR 129 194 -14 207 0 0 0 chr3 7369274 7369297 -210667861 + (TG)n Simple_repeat Simple_repeat 2 24 0 1940 121 0 0 chr3 7369302 7369584 -210667574 - AluSx SINE Alu -30 282 1 2339 84 0 0 chr3 7371863 7372160 -210664998 + AluSq SINE Alu 1 297 -16 21 0 0 0 chr3 7372822 7372843 -210664315 + AT_rich Low_complexity Low_complexity 1 21 0 1808 147 0 34 chr3 7374228 7374548 -210662610 + AluJo SINE Alu 1 309 -3 1669 86 9 0 chr3 7374637 7374870 -210662288 + L1MA2 LINE L1 6070 6304 0 31 0 0 0 chr3 7374870 7374901 -210662257 + AT_rich Low_complexity Low_complexity 1 31 0 2160 64 4 0 chr3 7375859 7376140 -210661018 + AluY SINE Alu 1 282 -29 27 0 0 0 chr3 7377408 7377435 -210659723 + GC_rich Low_complexity Low_complexity 1 27 0 244 307 89 9 chr3 7379333 7379558 -210657600 - L1ME4a LINE L1 0 6121 5879 291 71 0 0 chr3 7380503 7380545 -210656613 + (TG)n Simple_repeat Simple_repeat 2 43 0 430 280 42 52 chr3 7380553 7380746 -210656412 - MIR3 SINE MIR -15 193 3 231 291 39 48 chr3 7380968 7381071 -210656087 + MER5A DNA MER1_type 88 189 0 253 284 155 26 chr3 7381345 7381500 -210655658 + MIR3 SINE MIR 1 175 -33 299 272 62 0 chr3 7381709 7381790 -210655368 - L2 LINE L2 -37 3235 3150 287 267 28 128 chr3 7381843 7382023 -210655135 - MER5B DNA MER1_type -14 164 3 231 299 21 21 chr3 7382453 7382550 -210654608 - LTR33 LTR ERVL -14 507 411 237 139 0 0 chr3 7382817 7382853 -210654305 - LTR33 LTR ERVL -483 38 3 712 215 135 35 chr3 7383402 7383602 -210653556 - MIR SINE MIR 0 262 43 299 275 142 8 chr3 7383806 7383926 -210653232 - L2 LINE L2 -214 3058 2923 871 200 62 19 chr3 7384398 7384608 -210652550 + MER20 DNA MER1_type 1 219 0 23 0 0 0 chr3 7385142 7385165 -210651993 + AT_rich Low_complexity Low_complexity 1 23 0 571 229 41 0 chr3 7385165 7385287 -210651871 - FLAM_A SINE Alu -6 127 1 25 0 0 0 chr3 7386597 7386622 -210650536 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr3 7387209 7387230 -210649928 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 7387700 7387721 -210649437 + AT_rich Low_complexity Low_complexity 1 21 0 2111 109 0 3 chr3 7389389 7389693 -210647465 - AluSx SINE Alu -6 306 4 690 210 50 22 chr3 7390017 7390198 -210646960 + MIR SINE MIR 28 213 -49 330 296 111 19 chr3 7390281 7390443 -210646715 + MIR SINE MIR 19 195 -67 273 109 0 0 chr3 7390708 7390754 -210646404 + (TG)n Simple_repeat Simple_repeat 1 46 0 3106 123 115 17 chr3 7390934 7391523 -210645635 - LTR24C LTR ERV1 -1 594 2 2018 213 164 41 chr3 7392101 7392574 -210644584 - Charlie2a DNA MER1_type -144 2718 2305 2215 115 0 3 chr3 7392574 7392886 -210644272 - AluJo SINE Alu -1 311 1 2018 213 164 41 chr3 7392886 7393295 -210643863 - Charlie2a DNA MER1_type -557 2305 1727 2335 124 48 3 chr3 7393298 7393669 -210643489 - Tigger2 DNA MER2_type 0 2718 2331 321 100 0 0 chr3 7393675 7393725 -210643433 + (TG)n Simple_repeat Simple_repeat 2 51 0 749 221 0 0 chr3 7393727 7393872 -210643286 - AluSg/x SINE Alu -31 281 137 2140 153 103 7 chr3 7393878 7394303 -210642855 - Tigger2 DNA MER2_type -2252 466 1 801 250 35 0 chr3 7394303 7394503 -210642655 - Charlie2a DNA MER1_type -1136 1726 1520 * 2634 80 33 145 chr3 7394498 7394701 -210642457 - MER39B LTR ERV1 -200 453 229 772 191 8 0 chr3 7394701 7394858 -210642300 - FLAM_C SINE Alu 0 158 1 2634 80 33 145 chr3 7394858 7394903 -210642255 - MER39B LTR ERV1 -424 229 181 930 113 0 0 chr3 7394903 7395027 -210642131 - FLAM_C SINE Alu -9 124 1 2634 80 33 145 chr3 7395027 7395286 -210641872 - MER39B LTR ERV1 -472 181 1 1211 140 45 0 chr3 7395561 7395761 -210641397 + L1MA5A LINE L1 6085 6293 -4 2087 107 7 3 chr3 7395909 7396200 -210640958 - AluSq SINE Alu -21 292 1 911 176 23 0 chr3 7396391 7396567 -210640591 + FRAM SINE Alu 1 175 -1 479 233 133 13 chr3 7397021 7397171 -210639987 + MIR SINE MIR 21 188 -74 520 171 202 0 chr3 7397691 7397820 -210639338 + MER5A DNA MER1_type 6 160 -29 2654 123 31 2 chr3 7398060 7398476 -210638682 + MSTA LTR MaLR 1 428 0 292 225 113 0 chr3 7398493 7398564 -210638594 - L2 LINE L2 0 3272 3194 261 225 0 0 chr3 7398579 7398668 -210638490 + (TAAA)n Simple_repeat Simple_repeat 2 90 0 798 267 89 71 chr3 7398886 7399213 -210637945 + MLT1K LTR MaLR 126 463 -125 3517 128 4 28 chr3 7399213 7399753 -210637405 + MER1A DNA MER1_type 1 527 0 798 267 89 71 chr3 7399753 7399818 -210637340 + MLT1K LTR MaLR 463 525 -63 402 216 43 126 chr3 7400856 7400960 -210636198 - MER106A DNA MER1_type -2 234 123 691 228 0 0 chr3 7400960 7401083 -210636075 - FLAM_A SINE Alu -10 123 1 402 216 43 126 chr3 7401083 7401233 -210635925 - MER106A DNA MER1_type -113 123 1 476 207 122 49 chr3 7401233 7401397 -210635761 - MIR SINE MIR -17 245 70 730 292 142 14 chr3 7401514 7401795 -210635363 - MER77 LTR ERV1 -11 594 278 180 0 0 0 chr3 7401796 7401816 -210635342 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 2339 152 6 0 chr3 7401824 7402160 -210634998 - MER1B DNA MER1_type -1 338 1 240 188 277 0 chr3 7402160 7402261 -210634897 - MER77 LTR ERV1 -333 272 144 836 155 39 19 chr3 7402327 7402482 -210634676 + MLT1D LTR MaLR 329 486 -19 269 361 28 24 chr3 7402477 7402690 -210634468 + AluJo SINE Alu 32 245 -57 * 239 184 118 0 chr3 7402921 7402997 -210634161 - MER77 LTR ERV1 -377 228 144 781 160 40 20 chr3 7403063 7403213 -210633945 + MLT1D LTR MaLR 329 481 -24 1653 158 0 0 chr3 7403213 7403473 -210633685 + AluJo SINE Alu 32 291 -21 281 358 9 18 chr3 7403523 7403632 -210633526 - MIR SINE MIR -141 121 14 2103 104 3 0 chr3 7403713 7404000 -210633158 - AluSq SINE Alu -25 288 1 385 229 99 15 chr3 7404385 7404516 -210632642 - LTR16A1 LTR ERVL -3 454 313 234 220 20 140 chr3 7404631 7404731 -210632427 - LTR16A1 LTR ERVL -350 107 20 1000 251 127 39 chr3 7405330 7405607 -210631551 + MLT1F1 LTR MaLR 104 415 -152 1573 122 80 0 chr3 7405607 7405844 -210631314 - AluSx SINE Alu -13 299 44 1000 251 127 39 chr3 7405844 7406011 -210631147 + MLT1F1 LTR MaLR 415 566 -1 536 145 0 0 chr3 7406281 7406357 -210630801 - FRAM/FAM SINE Alu -102 74 1 25 0 0 0 chr3 7407664 7407689 -210629469 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr3 7408765 7408786 -210628372 + AT_rich Low_complexity Low_complexity 1 21 0 2107 107 0 3 chr3 7410454 7410753 -210626405 - AluSx SINE Alu -11 301 4 682 210 50 22 chr3 7411077 7411258 -210625900 + MIR SINE MIR 28 213 -49 330 296 111 19 chr3 7411341 7411503 -210625655 + MIR SINE MIR 19 195 -67 345 93 0 0 chr3 7411768 7411822 -210625336 + (TG)n Simple_repeat Simple_repeat 1 54 0 3104 125 115 17 chr3 7412002 7412591 -210624567 - LTR24C LTR ERV1 -1 594 2 1954 214 171 41 chr3 7413169 7413637 -210623521 - Charlie2a DNA MER1_type -144 2718 2312 2222 113 0 3 chr3 7413637 7413947 -210623211 - AluJo SINE Alu -3 309 1 1954 214 171 41 chr3 7413947 7414356 -210622802 - Charlie2a DNA MER1_type -550 2312 1727 2335 124 48 3 chr3 7414359 7414730 -210622428 - Tigger2 DNA MER2_type 0 2718 2331 228 35 0 0 chr3 7414736 7414765 -210622393 + (TG)n Simple_repeat Simple_repeat 1 29 0 766 216 0 0 chr3 7414775 7414923 -210622235 - AluSg/x SINE Alu -28 282 135 2157 156 104 5 chr3 7414929 7415353 -210621805 - Tigger2 DNA MER2_type -2252 466 1 802 238 31 36 chr3 7415353 7415576 -210621582 - Charlie2a DNA MER1_type -1136 1726 1505 * 2892 90 37 62 chr3 7415548 7415751 -210621407 - MER39B LTR ERV1 -200 453 246 958 194 105 112 chr3 7415751 7416082 -210621076 - AluSx SINE Alu 0 329 1 2892 90 37 62 chr3 7416082 7416341 -210620817 - MER39B LTR ERV1 -407 246 1 1224 135 45 0 chr3 7416616 7416816 -210620342 + L1MA5A LINE L1 6085 6293 -4 2057 113 7 3 chr3 7416964 7417255 -210619903 - AluSq SINE Alu -21 292 1 911 176 23 0 chr3 7417446 7417622 -210619536 + FRAM SINE Alu 1 175 -1 479 233 133 13 chr3 7418076 7418226 -210618932 + MIR SINE MIR 21 188 -74 520 171 202 0 chr3 7418746 7418875 -210618283 + MER5A DNA MER1_type 6 160 -29 2670 120 31 2 chr3 7419115 7419531 -210617627 + MSTA LTR MaLR 1 428 0 292 225 113 0 chr3 7419548 7419619 -210617539 - L2 LINE L2 0 3272 3194 290 216 0 18 chr3 7419634 7419745 -210617413 + (TAAA)n Simple_repeat Simple_repeat 2 110 0 798 267 89 71 chr3 7419963 7420290 -210616868 + MLT1K LTR MaLR 126 463 -125 3531 126 4 28 chr3 7420290 7420830 -210616328 + MER1A DNA MER1_type 1 527 0 798 267 89 71 chr3 7420830 7420895 -210616263 + MLT1K LTR MaLR 463 525 -63 669 227 0 0 chr3 7422037 7422156 -210615002 - FLAM_A SINE Alu -10 123 5 266 333 11 0 chr3 7422726 7422816 -210614342 + MLT1F1 LTR MaLR 5 95 -498 1011 243 109 76 chr3 7422938 7423215 -210613943 + MLT1F1 LTR MaLR 104 406 -161 1506 136 81 0 chr3 7423215 7423451 -210613707 - AluSx SINE Alu -14 298 44 1011 243 109 76 chr3 7423451 7423618 -210613540 + MLT1F1 LTR MaLR 406 566 -1 299 269 172 27 chr3 7423651 7423837 -210613321 - L1ME4a LINE L1 -227 5894 5682 2563 40 0 0 chr3 7423845 7424147 -210613011 + AluYb8 SINE Alu 1 302 -16 1172 98 0 0 chr3 7424147 7424310 -210612848 + AluYa5 SINE Alu 133 295 -16 1960 154 0 0 chr3 7424336 7424635 -210612523 + AluSx SINE Alu 1 299 -13 794 254 11 0 chr3 7424895 7425072 -210612086 - MER5A DNA MER1_type -8 181 3 333 295 19 9 chr3 7425445 7425550 -210611608 + MLT1K LTR MaLR 477 582 -6 278 301 68 62 chr3 7426321 7426438 -210610720 - L2 LINE L2 -1 3312 3192 354 23 0 0 chr3 7426438 7426481 -210610677 + (GA)n Simple_repeat Simple_repeat 2 44 0 278 301 68 62 chr3 7426481 7426509 -210610649 - L2 LINE L2 -121 3192 3166 948 236 75 77 chr3 7426538 7426991 -210610167 + MER110A LTR ERV1 3 454 -14 459 0 0 0 chr3 7427109 7427160 -210609998 + (TATG)n Simple_repeat Simple_repeat 2 52 0 2083 100 4 0 chr3 7427163 7427443 -210609715 - AluSx SINE Alu -30 282 2 2401 59 0 3 chr3 7427452 7427756 -210609402 - AluY SINE Alu -8 303 1 283 301 67 46 chr3 7427825 7428064 -210609094 - L2 LINE L2 -337 2977 2734 661 228 39 22 chr3 7428275 7428455 -210608703 - MER3 DNA MER1_type -26 183 1 919 56 17 39 chr3 7429081 7429339 -210607819 + (CA)n Simple_repeat Simple_repeat 1 252 0 585 144 40 0 chr3 7429526 7429651 -210607507 + GA-rich Low_complexity Low_complexity 1 130 0 1935 209 30 26 chr3 7429655 7430085 -210607073 + MLT1C LTR MaLR 36 467 0 1125 185 0 4 chr3 7430106 7430333 -210606825 - AluJo SINE Alu 0 312 87 2148 109 0 0 chr3 7430348 7430641 -210606517 - AluSg SINE Alu -15 295 3 411 246 0 51 chr3 7430644 7430762 -210606396 - FLAM_A SINE Alu -4 138 27 9613 40 27 94 chr3 7430900 7432423 -210604735 + SVA Other Other 1 1625 -440 1955 147 0 3 chr3 7432423 7432735 -210604423 + AluSq SINE Alu 1 311 -2 2186 116 0 0 chr3 7432737 7433048 -210604110 + AluSx SINE Alu 1 311 -1 9613 40 27 94 chr3 7433048 7433065 -210604093 + SVA Other Other 1626 2065 0 847 81 16 0 chr3 7433068 7433191 -210603967 + FLAM_C SINE Alu 1 125 -18 1544 199 28 0 chr3 7433202 7433484 -210603674 - MER63B DNA MER1_type -146 290 1 22 0 0 0 chr3 7433515 7433537 -210603621 + AT_rich Low_complexity Low_complexity 1 22 0 1797 162 0 9 chr3 7433662 7433977 -210603181 - AluSx SINE Alu 0 312 1 718 233 43 0 chr3 7433982 7434145 -210603013 + MIR SINE MIR 61 230 -32 533 215 15 8 chr3 7434147 7434277 -210602881 + AluSq/x SINE Alu 3 133 -180 274 125 31 42 chr3 7434354 7434450 -210602708 + A-rich Low_complexity Low_complexity 2 96 0 297 244 29 52 chr3 7434450 7434622 -210602536 + GA-rich Low_complexity Low_complexity 5 172 0 278 149 21 0 chr3 7435023 7435070 -210602088 - Charlie8 DNA MER1_type -1006 1411 1364 2028 123 3 0 chr3 7435142 7435442 -210601716 - AluSx SINE Alu -11 301 1 476 257 141 84 chr3 7435689 7435883 -210601275 + L1ME4a LINE L1 5631 5847 -274 1796 135 7 0 chr3 7435883 7436164 -210600994 - AluSg SINE Alu -15 295 13 476 257 141 84 chr3 7436164 7436253 -210600905 + L1ME4a LINE L1 5847 5930 -191 279 180 16 141 chr3 7436310 7436438 -210600720 - MLT1H LTR MaLR 0 549 438 1481 196 70 40 chr3 7436865 7437141 -210600017 + L1MC/D LINE L1 4789 5082 -1064 2158 110 0 10 chr3 7437141 7437450 -210599708 - AluSx SINE Alu -1 311 6 1481 196 70 40 chr3 7437450 7437575 -210599583 + L1MC/D LINE L1 5082 5202 -944 959 209 60 18 chr3 7437575 7437857 -210599301 + AluSx SINE Alu 1 294 -8 415 236 183 21 chr3 7438212 7438403 -210598755 + L1MC/D LINE L1 5296 5517 -2291 1629 75 0 0 chr3 7438445 7438658 -210598500 - AluSg SINE Alu -97 213 1 249 109 455 0 chr3 7439109 7439164 -210597994 - MADE1 DNA Mariner 0 80 1 1745 149 35 0 chr3 7439553 7439669 -210597489 + AluSx SINE Alu 1 112 -200 414 0 0 0 chr3 7439669 7439715 -210597443 + (TAA)n Simple_repeat Simple_repeat 2 47 0 1745 149 35 0 chr3 7439715 7439886 -210597272 + AluSx SINE Alu 112 298 -14 889 236 106 24 chr3 7440215 7440507 -210596651 - L2 LINE L2 -429 2885 2570 1703 161 7 20 chr3 7440536 7440834 -210596324 + AluJb SINE Alu 1 294 -18 207 0 0 0 chr3 7440837 7440860 -210596298 + (TA)n Simple_repeat Simple_repeat 2 24 0 235 328 12 58 chr3 7441977 7442080 -210595078 - MIR SINE MIR -63 145 68 638 230 15 0 chr3 7443505 7443640 -210593518 + MER3 DNA MER1_type 2 138 -71 2030 129 0 19 chr3 7443646 7443957 -210593201 + AluSg SINE Alu 1 305 -5 210 358 0 0 chr3 7444226 7444293 -210592865 - L2 LINE L2 -1 3271 3205 328 327 58 13 chr3 7444430 7444586 -210592572 - MIR SINE MIR -88 174 12 213 121 0 0 chr3 7444627 7444660 -210592498 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 502 188 240 19 chr3 7444838 7444992 -210592166 - MER53 DNA DNA 0 189 2 2222 98 7 0 chr3 7445252 7445559 -210591599 - AluSp SINE Alu -4 309 1 335 212 161 25 chr3 7445829 7445947 -210591211 - L2 LINE L2 -10 3303 3170 1824 122 15 0 chr3 7446194 7446465 -210590693 - AluSx SINE Alu -24 288 14 860 153 127 0 chr3 7446515 7446665 -210590493 + MER6B DNA MER2_type 37 205 -5 1821 192 68 21 chr3 7446948 7447376 -210589782 - MLT1C LTR MaLR -2 465 18 2039 125 0 3 chr3 7447605 7447909 -210589249 - AluSx SINE Alu -9 303 1 1071 149 123 0 chr3 7448200 7448395 -210588763 + MER20 DNA MER1_type 1 219 0 2121 103 7 0 chr3 7448835 7449135 -210588023 - AluSp SINE Alu -11 302 1 281 87 0 43 chr3 7449747 7449793 -210587365 - L2 LINE L2 -75 3238 3195 419 175 0 25 chr3 7450132 7450212 -210586946 - MER65A LTR ERV1 -333 112 35 506 81 0 0 chr3 7450213 7450287 -210586871 + Alu SINE Alu 229 302 -10 2036 99 3 11 chr3 7450296 7450579 -210586579 + AluSx SINE Alu 2 282 -30 459 0 0 0 chr3 7450582 7450633 -210586525 + (CATA)n Simple_repeat Simple_repeat 2 52 0 934 238 75 77 chr3 7450751 7451204 -210585954 - MER110A LTR ERV1 -14 454 3 278 301 68 62 chr3 7451233 7451261 -210585897 + L2 LINE L2 3166 3192 -121 318 26 0 0 chr3 7451261 7451300 -210585858 + (TC)n Simple_repeat Simple_repeat 2 40 0 278 301 68 62 chr3 7451300 7451417 -210585741 + L2 LINE L2 3192 3312 -1 291 263 25 12 chr3 7452212 7452292 -210584866 - MLT1K LTR MaLR -31 557 477 794 254 11 0 chr3 7452665 7452842 -210584316 + MER5A DNA MER1_type 3 181 -8 1960 154 0 0 chr3 7453102 7453401 -210583757 - AluSx SINE Alu -13 299 1 1198 96 0 0 chr3 7453427 7453593 -210583565 - AluYa5 SINE Alu -13 298 133 2563 40 0 0 chr3 7453593 7453895 -210583263 - AluYb8 SINE Alu -16 302 1 293 269 172 27 chr3 7453903 7454089 -210583069 + L1ME4a LINE L1 5682 5894 -227 1000 251 127 39 chr3 7454122 7454289 -210582869 - MLT1F1 LTR MaLR -1 566 415 1573 122 80 0 chr3 7454289 7454526 -210582632 + AluSx SINE Alu 44 299 -13 1000 251 127 39 chr3 7454526 7454803 -210582355 - MLT1F1 LTR MaLR -152 415 104 266 333 11 0 chr3 7454925 7455015 -210582143 - MLT1F1 LTR MaLR -498 95 5 234 220 20 140 chr3 7455402 7455502 -210581656 + LTR16A1 LTR ERVL 20 107 -350 385 229 99 15 chr3 7455617 7455748 -210581410 + LTR16A1 LTR ERVL 313 454 -3 2077 113 0 7 chr3 7456133 7456433 -210580725 + AluSq SINE Alu 1 298 -15 185 0 0 39 chr3 7456534 7456560 -210580598 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 198 192 154 19 chr3 7456647 7456699 -210580459 + L2 LINE L2 3252 3310 -3 2147 97 0 3 chr3 7456719 7457008 -210580150 + AluSx SINE Alu 1 288 -24 315 207 0 73 chr3 7458138 7458220 -210578938 + AluSg/x SINE Alu 171 246 -56 1067 201 0 4 chr3 7458225 7458454 -210578704 + AluSg/x SINE Alu 85 312 0 231 307 86 57 chr3 7458470 7458610 -210578548 - L2 LINE L2 -2 3311 3168 254 324 102 25 chr3 7458646 7458877 -210578281 - L2 LINE L2 -276 3037 2791 373 217 43 7 chr3 7458884 7459022 -210578136 + (TA)n Simple_repeat Simple_repeat 1 143 0 29 0 0 0 chr3 7459058 7459087 -210578071 + AT_rich Low_complexity Low_complexity 1 29 0 702 75 0 0 chr3 7459116 7459210 -210577948 - L1PA5 LINE L1 0 6154 6061 624 219 14 0 chr3 7459236 7459382 -210577776 - L1MA10 LINE L1 -13 6321 6174 1887 137 14 0 chr3 7459383 7459675 -210577483 + AluJo SINE Alu 1 296 -16 503 259 45 58 chr3 7459675 7459918 -210577240 - L1MD2 LINE L1 -139 6027 5788 282 297 14 109 chr3 7459961 7460099 -210577059 + MIR SINE MIR 32 156 -106 399 293 73 44 chr3 7460770 7460975 -210576183 + MIR SINE MIR 31 241 -21 242 116 23 0 chr3 7461034 7461077 -210576081 + (TG)n Simple_repeat Simple_repeat 2 45 0 891 266 129 6 chr3 7461177 7461511 -210575647 + L3 LINE CR1 1161 1535 -42 288 0 0 0 chr3 7461664 7461696 -210575462 + (T)n Simple_repeat Simple_repeat 1 32 0 359 203 100 144 chr3 7461779 7462050 -210575108 - MLT1K LTR MaLR 0 588 330 1306 194 0 68 chr3 7462179 7462503 -210574655 + AluJo SINE Alu 1 302 -10 1958 126 0 3 chr3 7462505 7462790 -210574368 + AluSx SINE Alu 1 284 -28 222 37 0 0 chr3 7462790 7462817 -210574341 + (CCAA)n Simple_repeat Simple_repeat 2 28 0 592 326 84 45 chr3 7462934 7463453 -210573705 + L2 LINE L2 2684 3260 -12 827 213 38 85 chr3 7464161 7464287 -210572871 + MIR SINE MIR 29 140 -122 1901 117 40 0 chr3 7464287 7464585 -210572573 - AluSx SINE Alu -2 310 1 827 213 38 85 chr3 7464585 7464693 -210572465 + MIR SINE MIR 140 252 -10 274 171 157 14 chr3 7464798 7464868 -210572290 - L2 LINE L2 -5 3308 3229 1947 113 15 95 chr3 7465019 7465365 -210571793 - L1PBa LINE L1 -4936 1927 1617 2048 115 0 29 chr3 7465365 7465678 -210571480 - AluSx SINE Alu -8 304 1 1947 113 15 95 chr3 7465678 7465740 -210571418 - L1PBa LINE L1 -5246 1617 1552 580 343 18 14 chr3 7465958 7466177 -210570981 + MIR SINE MIR 42 261 -1 251 295 67 0 chr3 7466235 7466340 -210570818 + L1ME4a LINE L1 6010 6121 0 2451 52 0 3 chr3 7466516 7466826 -210570332 + AluY SINE Alu 1 309 -2 1130 126 32 24 chr3 7466826 7467166 -210569992 + MER49 LTR ERV1 160 534 -389 2218 106 3 0 chr3 7467167 7467478 -210569680 - AluSx SINE Alu 0 312 1 1005 86 0 7 chr3 7467480 7467619 -210569539 - AluYb8 SINE Alu -180 138 1 1274 228 59 62 chr3 7467621 7467715 -210569443 + MER49 LTR ERV1 521 614 -309 1993 139 3 3 chr3 7467715 7468025 -210569133 - AluSx SINE Alu -2 310 1 1274 228 59 62 chr3 7468025 7468334 -210568824 + MER49 LTR ERV1 614 923 0 268 152 30 0 chr3 7468443 7468509 -210568649 + (TGAA)n Simple_repeat Simple_repeat 3 70 0 2275 121 0 0 chr3 7519148 7519446 -210517712 + AluSg SINE Alu 1 298 -12 607 301 98 25 chr3 7519454 7519977 -210517181 - L1M4 LINE L1 -813 5333 4775 228 300 90 0 chr3 7520983 7521083 -210516075 + MIR SINE MIR 120 228 -34 450 219 15 88 chr3 7521265 7521402 -210515756 - MIR SINE MIR -101 161 35 1594 112 5 5 chr3 7521415 7521639 -210515519 - AluSq SINE Alu -22 291 68 293 303 13 0 chr3 7521800 7521876 -210515282 + L2 LINE L2 3192 3268 -4 239 319 96 0 chr3 7521977 7522071 -210515087 - L3 LINE CR1 -393 1184 1082 7686 102 26 4 chr3 7523500 7524647 -210512511 - L1P LINE L1 -3314 2832 1661 231 227 252 34 chr3 7525057 7525176 -210511982 + MER5A DNA MER1_type 30 185 -4 578 223 141 0 chr3 7525192 7525352 -210511806 - MER5A DNA MER1_type 0 189 4 238 207 132 0 chr3 7525602 7525723 -210511435 + AluSg SINE Alu 2 138 -162 520 201 60 148 chr3 7526484 7526802 -210510356 + MER102b DNA MER1_type 52 341 0 827 187 66 28 chr3 7528069 7528251 -210508907 - MER5A DNA MER1_type 0 189 1 936 157 40 0 chr3 7529127 7529304 -210507854 - L1MB7 LINE L1 -183 6001 5814 182 283 130 22 chr3 7530740 7530832 -210506326 - L2 LINE L2 -21 3292 3191 2883 188 48 24 chr3 7532370 7533254 -210503904 + L1MA9 LINE L1 4848 5901 -411 289 247 81 86 chr3 7534768 7534954 -210502204 + L1ME LINE L1 5634 5818 -303 382 288 18 9 chr3 7535201 7535312 -210501846 - MIR SINE MIR -90 172 61 190 348 158 19 chr3 7535352 7535510 -210501648 + MIR3 SINE MIR 16 195 -13 221 398 0 0 chr3 7536208 7536296 -210500862 - MIR SINE MIR -55 153 66 217 334 88 0 chr3 7536971 7537107 -210500051 - MIR SINE MIR -63 145 45 381 253 22 0 chr3 7537170 7537261 -210499897 - MER5A DNA MER1_type -88 101 9 457 308 14 20 chr3 7538042 7538188 -210498970 + MIR3 SINE MIR 40 184 -24 342 270 41 0 chr3 7539045 7539171 -210497987 + MLT1J2 LTR MaLR 65 233 -278 320 275 102 23 chr3 7539849 7540055 -210497103 + MIR SINE MIR 9 225 -37 260 253 48 48 chr3 7540124 7540207 -210496951 + L2 LINE L2 3231 3313 0 843 271 76 15 chr3 7540298 7540724 -210496434 - MARNA DNA Mariner -33 553 70 328 264 174 0 chr3 7541262 7541383 -210495775 - MIR SINE MIR -62 200 59 640 345 47 14 chr3 7543628 7543924 -210493234 + L2 LINE L2 2654 2959 -355 2073 139 34 28 chr3 7544619 7544971 -210492187 - MSTB1 LTR MaLR 0 432 79 356 289 91 54 chr3 7545277 7545519 -210491639 + L1ME4a LINE L1 5778 6028 -93 1500 181 0 40 chr3 7545585 7545862 -210491296 - AluJo SINE Alu -17 295 30 1197 94 0 50 chr3 7546824 7547004 -210490154 + AluSq SINE Alu 143 313 0 494 296 78 4 chr3 7547154 7547602 -210489556 - L1ME4a LINE L1 -32 6089 5572 190 277 0 0 chr3 7547680 7547727 -210489431 - L2 LINE L2 0 3313 3267 586 237 194 0 chr3 7548095 7548281 -210488877 + MIR SINE MIR 11 232 -30 470 278 17 56 chr3 7548918 7549098 -210488060 - MER5B DNA MER1_type -2 176 4 350 258 0 22 chr3 7549098 7549185 -210487973 - MER5B DNA MER1_type -93 85 1 827 187 66 28 chr3 7549835 7550017 -210487141 - MER5A DNA MER1_type 0 189 1 1082 231 50 30 chr3 7550850 7551148 -210486010 + LTR40b LTR ERVL 1 304 -158 2072 123 20 0 chr3 7551161 7551461 -210485697 + AluSx SINE Alu 1 306 -6 371 159 16 0 chr3 7551464 7551527 -210485631 + LTR40a LTR ERVL 451 514 -5 247 281 148 39 chr3 7551669 7551797 -210485361 + L2 LINE L2 3171 3312 -1 1048 269 114 43 chr3 7551824 7552244 -210484914 - LTR16A LTR ERVL 0 450 1 2167 189 3 6 chr3 7552295 7552661 -210484497 - MLT1A1 LTR MaLR 0 365 1 1991 139 0 0 chr3 7552745 7553026 -210484132 - AluSx SINE Alu -19 293 13 4100 155 22 24 chr3 7553166 7553889 -210483269 + L1MA10 LINE L1 5602 6323 -11 378 351 73 71 chr3 7553966 7554352 -210482806 + L2 LINE L2 2838 3227 -45 1527 226 57 28 chr3 7554352 7554776 -210482382 - MER63B DNA MER1_type 0 436 1 378 351 73 71 chr3 7554776 7554814 -210482344 + L2 LINE L2 3227 3263 -9 2176 126 10 0 chr3 7555714 7556023 -210481135 - AluSx SINE Alu 0 312 1 21 0 0 0 chr3 7556173 7556194 -210480964 + AT_rich Low_complexity Low_complexity 1 21 0 218 222 111 0 chr3 7556440 7556485 -210480673 - L2 LINE L2 -3 3269 3220 584 290 109 62 chr3 7556715 7557118 -210480040 - MLT1K LTR MaLR -126 462 41 185 344 16 0 chr3 7557134 7557198 -210479960 - L2 LINE L2 -237 3035 2971 475 280 126 6 chr3 7559456 7559631 -210477527 + L2 LINE L2 3112 3307 -6 241 347 74 34 chr3 7559657 7559833 -210477325 - MIR SINE MIR -20 242 60 455 337 63 0 chr3 7560036 7560211 -210476947 - MIR SINE MIR -41 221 36 467 360 35 19 chr3 7560289 7560550 -210476608 + L3 LINE CR1 967 1231 -346 683 298 37 16 chr3 7560645 7560890 -210476268 + MIR SINE MIR 13 262 0 190 292 188 21 chr3 7561090 7561186 -210475972 - MIR SINE MIR -67 141 30 990 316 104 23 chr3 7561373 7562096 -210475062 + L2 LINE L2 2499 3308 -5 2380 88 0 28 chr3 7562899 7563217 -210473941 + AluY SINE Alu 1 309 -2 22 56 0 0 chr3 7563482 7563518 -210473640 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr3 7563528 7563551 -210473607 + AT_rich Low_complexity Low_complexity 1 23 0 270 231 0 0 chr3 7564369 7564434 -210472724 + (TA)n Simple_repeat Simple_repeat 1 65 0 190 355 0 0 chr3 7564434 7564496 -210472662 + L2 LINE L2 2920 2981 -291 329 223 117 21 chr3 7564543 7564637 -210472521 + MER5A DNA MER1_type 31 133 -56 258 213 0 0 chr3 7564990 7565037 -210472121 + L2 LINE L2 3257 3303 -10 2177 146 8 11 chr3 7565141 7565503 -210471655 + MLT1A1 LTR MaLR 5 365 0 398 286 0 0 chr3 7565567 7565665 -210471493 + L2 LINE L2 3173 3270 -2 323 283 43 11 chr3 7566211 7566303 -210470855 + MIR SINE MIR 118 212 -50 24 0 0 0 chr3 7567838 7567862 -210469296 + AT_rich Low_complexity Low_complexity 1 24 0 266 244 26 0 chr3 7567992 7568070 -210469088 + (TATATG)n Simple_repeat Simple_repeat 3 82 0 777 211 93 45 chr3 7568573 7568819 -210468339 + MIR SINE MIR 5 262 0 823 195 23 45 chr3 7570209 7570430 -210466728 + MER20 DNA MER1_type 2 217 -2 249 258 305 0 chr3 7571243 7571371 -210465787 - MIR SINE MIR -45 217 51 2582 238 30 20 chr3 7571567 7572211 -210464947 + MER82 DNA MER2_type 1 650 -3 687 178 103 23 chr3 7572614 7572788 -210464370 + MER5A DNA MER1_type 2 189 0 3882 168 14 3 chr3 7573320 7574016 -210463142 + MER50 LTR ERV1 7 710 -24 210 294 147 29 chr3 7574024 7574126 -210463032 - L2 LINE L2 -40 3273 3160 283 319 120 15 chr3 7575508 7575756 -210461402 - L3 LINE CR1 -15 1562 1238 2059 131 0 7 chr3 7576116 7576413 -210460745 - AluSx SINE Alu -17 295 1 991 204 125 14 chr3 7576769 7577048 -210460110 - LTR2 LTR ERV1 0 449 140 244 298 145 8 chr3 7577079 7577210 -210459948 - LTR2 LTR ERV1 -298 151 3 387 309 19 47 chr3 7577249 7577505 -210459653 - L2 LINE L2 -1037 2277 2029 280 258 34 34 chr3 7577596 7577685 -210459473 - L2 LINE L2 -1359 1955 1867 304 330 73 31 chr3 7578162 7578200 -210458958 + MIR SINE MIR 48 83 -179 2178 154 43 25 chr3 7578200 7578642 -210458516 - LTR7 LTR ERV1 0 450 1 304 330 73 31 chr3 7578642 7578794 -210458364 + MIR SINE MIR 83 246 -16 4952 214 18 33 chr3 7579518 7581545 -210455613 + L1PA8A LINE L1 3 2163 -4298 940 117 0 6 chr3 7581550 7581713 -210455445 + L1PA8A LINE L1 3634 3795 -2666 12574 110 5 7 chr3 7581760 7582559 -210454599 + L1PA8A LINE L1 3756 4555 -1891 2034 143 26 10 chr3 7582559 7582866 -210454292 + AluSx SINE Alu 1 312 0 12574 110 5 7 chr3 7582866 7584747 -210452411 + L1PA8A LINE L1 4555 6445 -1 1415 183 54 0 chr3 7584761 7585056 -210452102 + L1M2 LINE L1 5476 5786 -526 8343 54 7 0 chr3 7585241 7587073 -210450085 - L1PA5 LINE L1 -3 6151 4304 5958 90 2 15 chr3 7587338 7588224 -210448934 + L1PA10 LINE L1 5291 6165 -3 1494 174 14 88 chr3 7588308 7588732 -210448426 + MLT2D LTR ERVL 5 377 -20 256 259 0 0 chr3 7588739 7588797 -210448361 + (TATATG)n Simple_repeat Simple_repeat 6 63 0 258 100 50 0 chr3 7588801 7588841 -210448317 + MLT2D LTR ERVL 367 408 -6 649 278 40 48 chr3 7588846 7589094 -210448064 - MIR SINE MIR -10 252 7 290 146 0 18 chr3 7589670 7589725 -210447433 - L1ME LINE L1 -476 5645 5592 381 238 42 35 chr3 7589842 7590101 -210447057 + MLT1I LTR MaLR 95 399 -10 956 287 89 0 chr3 7590336 7590751 -210446407 - L1MC4a LINE L1 -1862 5946 5495 508 272 101 68 chr3 7590768 7591245 -210445913 - L1MC4a LINE L1 -1684 4462 3947 8036 214 17 7 chr3 7591626 7593578 -210443580 - L1P LINE L1 -1361 4785 2814 21264 32 20 1 chr3 7593589 7596968 -210440190 - L1PA4 LINE L1 -6 6149 2719 2520 38 0 0 chr3 7596968 7597288 -210439870 - L1P LINE L1 -1003 5143 4824 7811 102 29 6 chr3 7597292 7599275 -210437883 - L1PA7 LINE L1 -3 6466 4451 10397 98 7 0 chr3 7599278 7600773 -210436385 - L1PA7 LINE L1 -4812 1649 145 3342 203 20 12 chr3 7600771 7601519 -210435639 - L1PA13 LINE L1 -4803 1984 1231 * 227 321 9 0 chr3 7601557 7601666 -210435492 - L1PA12 LINE L1 -5279 2302 2193 227 335 29 61 chr3 7602512 7602757 -210434401 - L1PA12 LINE L1 -7202 379 143 724 286 152 47 chr3 7602788 7603474 -210433684 - L1M4 LINE L1 -3113 3033 2276 2329 104 3 0 chr3 7603475 7603773 -210433385 - AluSx SINE Alu -13 299 1 214 264 28 14 chr3 7603918 7603990 -210433168 + (CTA)n Simple_repeat Simple_repeat 2 74 0 341 366 42 0 chr3 7605482 7605624 -210431534 + MIR SINE MIR 86 233 -29 512 260 0 0 chr3 7605639 7605762 -210431396 + Tigger3(Golem) DNA MER2_type 3 125 -2904 288 103 39 39 chr3 7605759 7605837 -210431321 + Tigger3(Golem) DNA MER2_type 2483 2560 -469 * 711 176 11 102 chr3 7605844 7606031 -210431127 + FRAM SINE Alu 2 171 -5 2784 131 7 13 chr3 7606031 7606482 -210430676 + Tigger3(Golem) DNA MER2_type 2581 3028 -1 27 49 0 0 chr3 7606602 7606643 -210430515 + AT_rich Low_complexity Low_complexity 1 41 0 540 45 0 0 chr3 7607387 7607454 -210429704 + (TA)n Simple_repeat Simple_repeat 2 68 0 696 184 0 17 chr3 7607502 7607727 -210429431 - AluJb SINE Alu -1 311 1 2089 147 81 18 chr3 7607880 7608275 -210428883 - MSTA LTR MaLR -4 424 5 231 294 172 12 chr3 7608388 7608551 -210428607 - MIR SINE MIR -11 251 63 2192 126 3 0 chr3 7608634 7608935 -210428223 + AluSx SINE Alu 1 302 -10 21 36 0 0 chr3 7609195 7609223 -210427935 + AT_rich Low_complexity Low_complexity 1 28 0 568 148 56 0 chr3 7609359 7609467 -210427691 - L1MA9 LINE L1 -4 6308 6195 2050 178 76 4 chr3 7609469 7609941 -210427217 - L1MA8 LINE L1 -5 6286 5781 348 262 0 0 chr3 7609941 7610044 -210427114 + (TA)n Simple_repeat Simple_repeat 1 103 0 226 211 0 0 chr3 7610045 7610097 -210427061 - L1MC4 LINE L1 -1339 6703 6652 286 342 0 0 chr3 7610097 7610176 -210426982 + (CATA)n Simple_repeat Simple_repeat 2 80 0 359 315 0 11 chr3 7610181 7610362 -210426796 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 591 293 0 0 chr3 7610378 7610706 -210426452 + (TA)n Simple_repeat Simple_repeat 1 328 0 183 366 0 0 chr3 7610732 7610907 -210426251 + (CATATA)n Simple_repeat Simple_repeat 2 176 0 * 279 161 0 0 chr3 7610880 7610936 -210426222 + (CA)n Simple_repeat Simple_repeat 2 57 0 556 159 90 141 chr3 7610938 7611194 -210425964 - L1MA8 LINE L1 -513 5778 5543 569 276 75 10 chr3 7611304 7611711 -210425447 - L1 LINE L1 -2597 3549 3112 1369 176 82 34 chr3 7611886 7612331 -210424827 - LTR10A LTR ERV1 -79 530 1 189 303 13 26 chr3 7612471 7612547 -210424611 + MIR SINE MIR 188 262 0 4786 136 2 67 chr3 7613022 7613853 -210423305 - THE1C-int LTR MaLR -726 854 86 5644 75 13 1 chr3 7613853 7614610 -210422548 - MER4E LTR ERV1 0 766 1 4786 136 2 67 chr3 7614610 7614689 -210422469 - THE1C-int LTR MaLR -1494 86 3 1852 152 76 22 chr3 7614691 7615047 -210422111 - THE1C LTR MaLR 0 375 1 395 247 7 41 chr3 7615059 7615205 -210421953 + MER104 DNA Tc2 39 179 -1 297 309 166 7 chr3 7615366 7615505 -210421653 + MER91A DNA MER1_type 1 161 -35 432 337 96 33 chr3 7615764 7616253 -210420905 + MLT1K LTR MaLR 16 535 -53 264 314 0 10 chr3 7616377 7616479 -210420679 + CT-rich Low_complexity Low_complexity 2 102 0 208 280 178 37 chr3 7616887 7616994 -210420164 + L2 LINE L2 3192 3313 0 2534 140 24 2 chr3 7617339 7617752 -210419406 + MSTB LTR MaLR 3 424 -2 8137 185 44 9 chr3 7617754 7619349 -210417809 + MSTB-int LTR MaLR 1 1651 0 1971 170 78 18 chr3 7619351 7619751 -210417407 + MSTB LTR MaLR 3 426 0 3076 90 28 0 chr3 7619797 7620230 -210416928 - L1PA11 LINE L1 0 6174 5730 259 266 67 8 chr3 7621889 7621987 -210415171 + MIR SINE MIR 74 175 -68 1995 154 0 0 chr3 7622488 7622780 -210414378 + AluSx SINE Alu 1 292 -20 3434 48 0 0 chr3 7623114 7623529 -210413629 + L1PA7 LINE L1 5733 6147 -7 2099 119 30 0 chr3 7625325 7625628 -210411530 + AluSx SINE Alu 1 312 0 501 288 85 29 chr3 7625862 7626367 -210410791 + L1MC4a LINE L1 3877 4421 -1725 477 317 61 66 chr3 7626588 7626745 -210410413 + L1MC4a LINE L1 4733 4889 -1257 2270 99 3 0 chr3 7626745 7627039 -210410119 - AluSp SINE Alu -18 295 1 477 317 61 66 chr3 7627039 7627275 -210409883 + L1MC4a LINE L1 4889 5124 -1022 1067 273 90 56 chr3 7627422 7628081 -210409077 + L1MC4a LINE L1 5265 5819 -302 210 315 72 9 chr3 7629024 7629135 -210408023 - MIR SINE MIR 0 262 145 324 0 0 0 chr3 7629538 7629574 -210407584 + (A)n Simple_repeat Simple_repeat 1 36 0 10191 225 59 66 chr3 7629766 7634104 -210403054 - L1M2 LINE L1 -602 6710 2343 2343 164 50 7 chr3 7634104 7634542 -210402616 - MSTB2 LTR MaLR 0 457 1 960 203 31 22 chr3 7634542 7634769 -210402389 - MER46A DNA MER2_type -7 229 1 10191 225 59 66 chr3 7634769 7636077 -210401081 - L1M2 LINE L1 -4967 2345 1193 266 269 92 43 chr3 7636625 7636766 -210400392 - L2 LINE L2 -1 3312 3165 257 233 79 55 chr3 7637216 7637418 -210399740 - LTR33 LTR ERVL -16 505 299 292 303 42 7 chr3 7637529 7637671 -210399487 - LTR33 LTR ERVL -366 155 9 593 129 0 0 chr3 7637846 7637931 -210399227 - FLAM SINE Alu -19 124 40 259 225 0 38 chr3 7638037 7638117 -210399041 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 801 258 45 1 chr3 7640454 7640661 -210396497 - MIR SINE MIR -47 215 3 848 181 117 0 chr3 7641137 7641325 -210395833 - MER20 DNA MER1_type -2 217 8 264 200 0 0 chr3 7641648 7641733 -210395425 + CT-rich Low_complexity Low_complexity 1 85 0 3902 118 3 0 chr3 7642481 7643068 -210394090 + L1PA13 LINE L1 5562 6150 -13 1320 170 64 70 chr3 7643214 7643573 -210393585 + MLT1A1 LTR MaLR 1 357 -8 484 321 51 10 chr3 7643590 7643883 -210393275 + MLT1K LTR MaLR 262 566 -22 493 262 41 21 chr3 7644017 7644162 -210392996 + MIR SINE MIR 41 188 -74 340 293 118 7 chr3 7644343 7644514 -210392644 - MIR SINE MIR -62 146 1 187 246 35 35 chr3 7646479 7646536 -210390622 + MIR SINE MIR 96 152 -56 364 291 87 76 chr3 7646825 7647182 -210389976 - MLT1K LTR MaLR -87 501 141 192 40 0 0 chr3 7648412 7648437 -210388721 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 775 155 9 0 chr3 7648438 7648554 -210388604 - AluJb SINE Alu -193 119 3 782 226 59 44 chr3 7648668 7648872 -210388286 + MER63A DNA MER1_type 4 210 0 896 233 77 85 chr3 7649042 7649604 -210387554 - L1ME3A LINE L1 -5 6165 5609 297 244 111 84 chr3 7650203 7650428 -210386730 - L2 LINE L2 -218 3054 2824 934 187 16 5 chr3 7650906 7651093 -210386065 - MER5A DNA MER1_type 0 189 1 838 255 25 103 chr3 7651360 7651756 -210385402 + MLT1A1 LTR MaLR 1 365 0 565 231 28 66 chr3 7652291 7652331 -210384827 + MER5B DNA MER1_type 1 41 -137 2205 133 0 0 chr3 7652331 7652640 -210384518 + AluSg SINE Alu 1 309 -1 565 231 28 66 chr3 7652640 7652781 -210384377 + MER5B DNA MER1_type 41 175 -3 984 180 16 0 chr3 7652790 7652973 -210384185 + MER5A DNA MER1_type 1 186 -3 374 357 16 11 chr3 7652987 7653172 -210383986 - MER5A DNA MER1_type -3 186 1 257 338 101 36 chr3 7653208 7653347 -210383811 - MER5B DNA MER1_type -16 162 15 477 273 45 45 chr3 7654003 7654157 -210383001 - MIR3 SINE MIR -39 169 16 2113 236 50 12 chr3 7655094 7655612 -210381546 + MLT1F LTR MaLR 5 542 0 327 289 0 0 chr3 7655622 7655712 -210381446 + L2 LINE L2 3224 3313 0 740 267 61 17 chr3 7656003 7656445 -210380713 - LTR33 LTR ERVL -25 496 3 414 138 0 0 chr3 7656727 7656792 -210380366 + AluSc SINE Alu 236 300 -9 1293 165 117 26 chr3 7656796 7657105 -210380053 - THE1C LTR MaLR -38 337 1 538 320 46 25 chr3 7657264 7657461 -210379697 - L3 LINE CR1 -8 1569 1369 968 226 22 2 chr3 7657485 7657758 -210379400 - L1ME1 LINE L1 -177 5989 5712 271 246 67 15 chr3 7658197 7658331 -210378827 - L1MEd LINE L1 -5973 146 6 181 284 40 27 chr3 7659594 7659668 -210377490 - MIR3 SINE MIR -47 161 87 222 255 0 0 chr3 7659812 7659863 -210377295 - MIR SINE MIR -108 154 104 495 264 9 88 chr3 7659968 7660184 -210376974 - MIR SINE MIR -44 218 20 2432 198 49 12 chr3 7660197 7660788 -210376370 - MER90 LTR ERV1 -1 613 1 249 311 106 12 chr3 7660813 7660974 -210376184 - L2 LINE L2 -618 2696 2521 379 283 122 24 chr3 7662823 7663028 -210374130 - LTR16A LTR ERVL -6 444 220 848 237 45 0 chr3 7663484 7663682 -210373476 - MIR SINE MIR -40 222 16 685 278 34 1 chr3 7663710 7663938 -210373220 - MIR SINE MIR -13 249 16 854 136 220 5 chr3 7665439 7665630 -210371528 + MER46A DNA MER2_type 1 232 -4 1911 178 3 45 chr3 7665646 7665785 -210371373 + MLT1A1 LTR MaLR 3 146 -219 2149 26 56 4 chr3 7665785 7666089 -210371069 - AluY SINE Alu 0 318 1 1911 178 3 45 chr3 7666089 7666325 -210370833 + MLT1A1 LTR MaLR 146 363 -2 1826 177 20 3 chr3 7666807 7667112 -210370046 - AluSx SINE Alu -2 310 1 346 157 14 0 chr3 7667334 7667404 -210369754 + MLT2B3 LTR ERVL 1 71 -483 1587 189 129 55 chr3 7667497 7667948 -210369210 + MLT2B3 LTR ERVL 71 554 0 521 296 119 51 chr3 7668205 7668753 -210368405 - MLT1K LTR MaLR 0 588 4 720 284 92 42 chr3 7668967 7669424 -210367734 + LTR33 LTR ERVL 34 513 -8 246 295 52 75 chr3 7670250 7670423 -210366735 + MIR SINE MIR 14 182 -80 1162 204 8 17 chr3 7670538 7670773 -210366385 + MER8 DNA MER2_type 7 239 0 341 202 18 53 chr3 7671176 7671290 -210365868 - MER103 DNA DNA -49 117 8 484 243 110 12 chr3 7671656 7671829 -210365329 - MIR SINE MIR -1 261 72 993 258 57 6 chr3 7671841 7672155 -210365003 + MER58B DNA MER1_type 12 341 0 204 322 56 94 chr3 7673267 7673609 -210363549 - L2 LINE L2 -4 3268 2940 189 258 30 45 chr3 7673915 7673981 -210363177 + MIR SINE MIR 87 151 -57 10906 41 7 0 chr3 7673982 7676086 -210361072 + L1PA5 LINE L1 4027 6147 -7 512 208 16 0 chr3 7676088 7676213 -210360945 + (TATG)n Simple_repeat Simple_repeat 2 128 0 206 245 19 0 chr3 7676329 7676382 -210360776 + L2 LINE L2 3217 3270 -2 539 262 104 0 chr3 7677520 7677684 -210359474 + MIR SINE MIR 44 224 -38 616 241 6 6 chr3 7678876 7679034 -210358124 + MER20 DNA MER1_type 33 190 -29 40651 51 4 3 chr3 7679086 7685232 -210351926 - L1PA5 LINE L1 0 6154 7 756 98 91 0 chr3 7685232 7685364 -210351794 - L1P5 LINE L1 -543 5608 5465 873 133 0 67 chr3 7685364 7685544 -210351614 - MLT1B LTR MaLR -222 168 1 187 342 45 0 chr3 7685798 7685909 -210351249 + MIR SINE MIR 92 207 -55 2321 112 3 0 chr3 7686496 7686801 -210350357 + AluSq SINE Alu 1 306 -7 383 244 133 22 chr3 7687758 7687842 -210349316 - MIR SINE MIR -15 247 149 513 274 71 18 chr3 7687842 7688010 -210349148 - MER5B DNA MER1_type -1 177 1 15142 215 24 6 chr3 7688993 7694346 -210342812 + L1PA15 LINE L1 1357 6816 0 338 159 23 102 chr3 7694692 7694780 -210342378 - MIR3 SINE MIR -14 194 114 301 294 12 0 chr3 7695315 7695400 -210341758 + MIR SINE MIR 68 153 -109 527 374 29 3 chr3 7695749 7696089 -210341069 + L1MEc LINE L1 35 383 -6013 638 259 77 66 chr3 7696121 7696820 -210340338 + L1MEc LINE L1 942 1648 -4748 * 2659 247 84 15 chr3 7696810 7697318 -210339840 + L1MEc LINE L1 2244 2716 -3499 2470 99 42 11 chr3 7697318 7697671 -210339487 - THE1B LTR MaLR 0 364 1 2659 247 84 15 chr3 7697671 7698402 -210338756 + L1MEc LINE L1 2716 3568 -2647 590 125 38 109 chr3 7698412 7698547 -210338611 + L1MD3 LINE L1 7729 7849 -146 2421 97 0 0 chr3 7698547 7698855 -210338303 - AluY SINE Alu -3 308 1 590 125 38 109 chr3 7698855 7698903 -210338255 + L1MD3 LINE L1 7849 7899 -96 754 278 28 5 chr3 7698903 7699115 -210338043 + MER20 DNA MER1_type 1 217 -2 321 125 16 0 chr3 7699152 7699216 -210337942 + L1MD3 LINE L1 7931 7995 0 * 423 268 63 0 chr3 7699210 7699352 -210337806 + L1MEc LINE L1 3563 3713 -2502 241 65 87 0 chr3 7700401 7700447 -210336711 + CT-rich Low_complexity Low_complexity 1 50 0 1619 192 4 0 chr3 7700447 7700723 -210336435 - AluJb SINE Alu -1 311 35 665 247 26 115 chr3 7701673 7702021 -210335137 + MLT1A1 LTR MaLR 5 321 -44 481 236 214 25 chr3 7702080 7702356 -210334802 + MER41B LTR ERV1 100 297 -189 477 254 70 22 chr3 7702442 7702627 -210334531 + MER66B LTR ERV1 293 486 0 376 235 15 30 chr3 7703517 7703649 -210333509 + LTR16A1 LTR ERVL 307 436 -21 1867 146 21 0 chr3 7703798 7704086 -210333072 - AluSq SINE Alu -19 294 1 484 335 60 9 chr3 7704804 7705037 -210332121 - MIR SINE MIR -6 256 12 377 302 71 10 chr3 7705745 7706053 -210331105 + L1ME4a LINE L1 5594 5920 -201 309 261 15 97 chr3 7706070 7706155 -210331003 + L1ME4a LINE L1 5977 6049 -72 1670 149 40 7 chr3 7706155 7706430 -210330728 + AluJb SINE Alu 1 284 -28 309 261 15 97 chr3 7706430 7706478 -210330680 + L1ME4a LINE L1 6049 6099 -22 24 0 0 0 chr3 7706530 7706554 -210330604 + AT_rich Low_complexity Low_complexity 1 24 0 807 201 113 15 chr3 7706590 7706794 -210330364 + MER58A DNA MER1_type 1 224 0 299 237 52 0 chr3 7707116 7707213 -210329945 - HAL1b LINE L1 -502 846 745 573 266 75 90 chr3 7707224 7707600 -210329558 - HAL1b LINE L1 -912 436 67 2363 151 60 2 chr3 7708406 7708809 -210328349 + MSTB LTR MaLR 1 426 0 356 182 55 18 chr3 7709244 7709354 -210327804 - L1MC3 LINE L1 0 7785 7672 1694 218 8 3 chr3 7709362 7709716 -210327442 - MLT1A1 LTR MaLR 0 365 10 2765 217 41 18 chr3 7709725 7710797 -210326361 - L1MC3 LINE L1 -486 7299 6180 1473 183 87 67 chr3 7710804 7711251 -210325907 - MER31B LTR ERV1 -10 456 1 3588 186 25 30 chr3 7711251 7711464 -210325694 - L1MC3 LINE L1 -1611 6174 5962 2149 125 0 3 chr3 7711464 7711759 -210325399 - AluSc SINE Alu -10 299 6 3588 186 25 30 chr3 7711759 7712422 -210324736 - L1MC3 LINE L1 -1823 5962 5302 1197 244 178 11 chr3 7712419 7713047 -210324111 - L1MC3 LINE L1 -1306 4840 4108 * 1753 178 24 3 chr3 7713072 7713404 -210323754 + MLT1A1 LTR MaLR 1 341 -24 1172 214 67 17 chr3 7713419 7713775 -210323383 - L1MC3 LINE L1 -2065 4081 3708 4652 148 35 23 chr3 7713786 7714881 -210322277 - L1MA8 LINE L1 -73 6218 5111 3454 249 51 9 chr3 7714936 7716294 -210320864 - L1MC3 LINE L1 -2466 3680 2266 21 36 0 0 chr3 7716337 7716365 -210320793 + AT_rich Low_complexity Low_complexity 1 28 0 920 287 73 37 chr3 7716550 7716943 -210320215 - L1MC4a LINE L1 -1896 5912 5488 1719 197 7 0 chr3 7716943 7717243 -210319915 + AluJo SINE Alu 1 302 -10 920 287 73 37 chr3 7717243 7717449 -210319709 - L1MC4a LINE L1 -2320 5488 5291 527 327 78 27 chr3 7717473 7717920 -210319238 - L1MC4a LINE L1 -892 5254 4785 28 86 0 0 chr3 7717929 7717999 -210319159 + AT_rich Low_complexity Low_complexity 1 70 0 22 35 0 0 chr3 7720899 7720928 -210316230 + AT_rich Low_complexity Low_complexity 1 29 0 185 263 0 0 chr3 7721205 7721243 -210315915 + MIR SINE MIR 113 150 -58 3059 206 73 16 chr3 7721758 7723395 -210313763 - L1PBa LINE L1 -4875 1988 115 199 350 52 0 chr3 7723439 7723536 -210313622 - MIR3 SINE MIR -9 199 98 370 275 17 40 chr3 7724197 7724373 -210312785 + MIR SINE MIR 50 220 -42 189 147 0 0 chr3 7724619 7724653 -210312505 + (TC)n Simple_repeat Simple_repeat 1 34 0 1699 211 108 0 chr3 7724936 7725334 -210311824 + MER31B LTR ERV1 4 444 -22 1190 192 20 119 chr3 7725352 7725747 -210311411 - MLT1A1 LTR MaLR -2 363 8 2369 192 58 13 chr3 7726964 7727495 -210309663 - MER89 LTR ERV1 0 559 5 750 210 18 32 chr3 7727503 7727722 -210309436 - L1ME1 LINE L1 -19 6147 5932 233 259 56 9 chr3 7727777 7727885 -210309273 - L1MCc LINE L1 -5485 938 826 696 222 70 59 chr3 7727992 7728262 -210308896 - ORSL DNA AcHobo 0 275 3 436 277 18 45 chr3 7728429 7728661 -210308497 - L1MCc LINE L1 -5708 714 258 3286 92 2 38 chr3 7728878 7729348 -210307810 + MLT2A2 LTR ERVL 1 453 0 29 0 0 0 chr3 7730338 7730367 -210306791 + AT_rich Low_complexity Low_complexity 1 29 0 204 167 19 74 chr3 7730420 7730474 -210306684 + L2 LINE L2 3263 3313 0 1015 267 100 10 chr3 7730772 7731162 -210305996 - MER110 LTR ERV1 -22 469 45 231 146 21 0 chr3 7731319 7731367 -210305791 + (CAT)n Simple_repeat Simple_repeat 3 51 0 2061 194 5 3 chr3 7731396 7731788 -210305370 - LTR39 LTR ERV1 0 783 391 1433 185 34 84 chr3 7731901 7732055 -210305103 - LTR39 LTR ERV1 -388 395 235 6166 100 11 5 chr3 7732055 7733220 -210303938 + L1PA10 LINE L1 4982 6152 -16 1433 185 34 84 chr3 7733220 7733481 -210303677 - LTR39 LTR ERV1 -548 235 1 412 275 25 17 chr3 7733485 7733605 -210303553 + MIR SINE MIR 33 153 -55 229 345 78 5 chr3 7733970 7734109 -210303049 + MIR SINE MIR 1 154 -65 360 303 8 41 chr3 7734179 7734301 -210302857 - L2 LINE L2 -7 3306 3189 4655 95 23 0 chr3 7734418 7735070 -210302088 + PABL_B LTR ERV1 1 667 0 338 279 162 0 chr3 7735079 7735215 -210301943 - MIR SINE MIR -16 246 89 21 36 0 0 chr3 7736337 7736365 -210300793 + AT_rich Low_complexity Low_complexity 1 28 0 348 313 71 28 chr3 7736383 7736735 -210300423 + HAL1 LINE L1 1168 1534 -973 25 51 0 0 chr3 7736868 7736907 -210300251 + AT_rich Low_complexity Low_complexity 1 39 0 180 0 0 0 chr3 7737004 7737024 -210300134 + (T)n Simple_repeat Simple_repeat 1 20 0 207 0 0 0 chr3 7737024 7737047 -210300111 + (TG)n Simple_repeat Simple_repeat 2 24 0 180 0 0 0 chr3 7737913 7737933 -210299225 + (T)n Simple_repeat Simple_repeat 1 20 0 207 0 0 0 chr3 7737933 7737956 -210299202 + (TG)n Simple_repeat Simple_repeat 2 24 0 2757 181 42 42 chr3 7738379 7738973 -210298185 + L1MB8 LINE L1 5514 6110 -68 1748 154 68 0 chr3 7738973 7739253 -210297905 - AluSg SINE Alu -11 299 1 2757 181 42 42 chr3 7739253 7739317 -210297841 + L1MB8 LINE L1 6109 6172 -6 25 0 0 0 chr3 7739380 7739405 -210297753 + AT_rich Low_complexity Low_complexity 1 25 0 239 316 0 0 chr3 7739832 7739911 -210297247 + T-rich Low_complexity Low_complexity 1 79 0 1742 219 38 22 chr3 7740492 7740943 -210296215 - MER31A LTR ERV1 -27 458 1 191 262 0 24 chr3 7741261 7741303 -210295855 - L2 LINE L2 -92 3180 3140 288 289 48 64 chr3 7741376 7741563 -210295595 + L2 LINE L2 2650 2833 -481 25 0 0 0 chr3 7743285 7743310 -210293848 + AT_rich Low_complexity Low_complexity 1 25 0 187 273 55 18 chr3 7744576 7744631 -210292527 - MIR SINE MIR -186 76 20 537 207 59 0 chr3 7744993 7745130 -210292028 + MIR SINE MIR 98 242 -20 217 152 22 43 chr3 7745101 7745147 -210292011 + L2 LINE L2 3218 3262 -10 * 354 299 64 141 chr3 7745772 7746119 -210291039 - L2 LINE L2 -12 3260 2959 3260 157 50 10 chr3 7746119 7746699 -210290459 - LTR26 LTR ERV1 0 603 1 354 299 64 141 chr3 7746699 7746833 -210290325 - L2 LINE L2 -313 2959 2816 225 0 0 0 chr3 7747081 7747106 -210290052 + (TA)n Simple_repeat Simple_repeat 2 26 0 1281 199 45 6 chr3 7747341 7747765 -210289393 - MLT1D LTR MaLR 0 505 1 3824 69 54 163 chr3 7747847 7748619 -210288539 - LTR12 LTR ERV1 0 688 1 289 274 228 25 chr3 7748687 7748884 -210288274 + L2 LINE L2 2841 3077 -195 205 125 0 0 chr3 7748938 7748970 -210288188 - L2 LINE L2 0 3313 3282 523 287 140 37 chr3 7748970 7749371 -210287787 - LTR16A LTR ERVL 0 450 9 814 291 88 39 chr3 7749382 7749934 -210287224 - L2 LINE L2 -28 3285 2699 180 0 0 0 chr3 7750284 7750304 -210286854 + (CTTTG)n Simple_repeat Simple_repeat 3 22 0 216 307 45 23 chr3 7750550 7750638 -210286520 - L2 LINE L2 -33 3239 3150 761 177 35 0 chr3 7750642 7750783 -210286375 + MER5A DNA MER1_type 3 148 -41 2120 173 19 35 chr3 7751045 7751290 -210285868 - MSTB LTR MaLR 0 426 189 1830 92 3 76 chr3 7751290 7751606 -210285552 - L1PA10 LINE L1 -9 6159 5867 2120 173 19 35 chr3 7751606 7751789 -210285369 - MSTB LTR MaLR -237 189 5 4256 250 95 32 chr3 7753094 7753553 -210283605 + L1MB7 LINE L1 5 434 -6525 1870 191 89 0 chr3 7753553 7753946 -210283212 - MSTA LTR MaLR 0 428 1 4256 250 95 32 chr3 7753946 7755447 -210281711 + L1MB7 LINE L1 434 2107 -4852 1570 205 80 27 chr3 7755447 7755823 -210281335 - MSTD LTR MaLR 0 396 1 4256 250 95 32 chr3 7755823 7756210 -210280948 + L1MB7 LINE L1 2107 2468 -4491 444 243 84 61 chr3 7756329 7756663 -210280495 + L1MB7 LINE L1 2476 2820 -4318 6093 88 34 0 chr3 7756663 7757643 -210279515 + L1PA13 LINE L1 5152 6161 -2 444 243 84 61 chr3 7757643 7757654 -210279504 + L1MB7 LINE L1 2820 2829 -4309 2940 204 31 0 chr3 7757679 7758316 -210278842 + L1MB7 LINE L1 6328 6984 -11 344 320 0 33 chr3 7758420 7758573 -210278585 - MIR SINE MIR -95 167 20 608 288 149 10 chr3 7758677 7759094 -210278064 - L1ME4a LINE L1 -99 6022 5548 207 333 0 0 chr3 7759140 7759191 -210277967 + MIR SINE MIR 36 86 -176 273 111 89 0 chr3 7759193 7759238 -210277920 - MLT2D LTR ERVL 0 414 366 1141 219 84 43 chr3 7759323 7759670 -210277488 - MLT2D LTR ERVL -53 361 1 382 228 150 16 chr3 7759692 7759819 -210277339 + MIR SINE MIR 111 254 -8 32 86 0 0 chr3 7760001 7760082 -210277076 + AT_rich Low_complexity Low_complexity 1 81 0 1414 216 20 26 chr3 7760156 7760507 -210276651 + MLT1A1 LTR MaLR 1 349 -16 182 351 60 45 chr3 7760846 7760980 -210276178 - L2 LINE L2 -183 3089 2954 239 178 0 0 chr3 7762259 7762304 -210274854 - MER5A DNA MER1_type -137 52 8 28 29 0 0 chr3 7762481 7762516 -210274642 + AT_rich Low_complexity Low_complexity 1 35 0 258 250 0 45 chr3 7762608 7762696 -210274462 - HAL1b LINE L1 -519 829 746 2819 113 3 0 chr3 7763101 7763464 -210273694 - THE1B LTR MaLR 0 364 1 187 54 54 27 chr3 7763571 7763608 -210273550 + (TATG)n Simple_repeat Simple_repeat 2 39 0 355 336 52 8 chr3 7764013 7764147 -210273011 - MIR3 SINE MIR -63 145 6 2678 140 36 10 chr3 7764269 7764684 -210272474 - MSTA LTR MaLR 0 428 3 1800 169 13 3 chr3 7764826 7765128 -210272030 - AluJb SINE Alu -7 305 1 685 323 106 23 chr3 7765260 7765885 -210271273 + L2 LINE L2 2565 3243 -70 2535 168 24 0 chr3 7765886 7766304 -210270854 + MSTA LTR MaLR 1 428 0 1956 140 66 41 chr3 7768436 7768800 -210268358 + THE1C LTR MaLR 1 373 -2 22 0 0 0 chr3 7769170 7769192 -210267966 + AT_rich Low_complexity Low_complexity 1 22 0 3861 120 0 0 chr3 7769517 7770049 -210267109 + L1PA8 LINE L1 5635 6166 -6 3289 224 48 8 chr3 7770463 7770827 -210266331 + MER21B LTR ERV1 4 352 -511 2606 168 26 5 chr3 7770827 7771244 -210265914 - MSTB LTR MaLR 0 426 1 3289 224 48 8 chr3 7771244 7771601 -210265557 + MER21B LTR ERV1 352 754 -109 402 150 75 0 chr3 7771890 7771970 -210265188 - MER53 DNA DNA -81 108 23 393 145 43 0 chr3 7771911 7771980 -210265178 + MER53 DNA DNA 116 187 -2 * 228 182 0 0 chr3 7773837 7773881 -210263277 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 1508 208 7 11 chr3 7773882 7774166 -210262992 - AluJo SINE Alu -21 291 9 229 309 72 31 chr3 7774523 7774620 -210262538 - MIR SINE MIR -66 142 42 227 239 0 45 chr3 7774650 7774717 -210262441 + MER113 DNA MER1_type? 1 64 -457 273 119 0 0 chr3 7774786 7774828 -210262330 + (CATA)n Simple_repeat Simple_repeat 2 43 0 2716 203 17 67 chr3 7775237 7775881 -210261277 - LTR9 LTR ERV1 0 612 1 1286 197 29 18 chr3 7775886 7776160 -210260998 - HUERS-P3 LTR ERV1 -6 8913 8299 220 263 18 0 chr3 7777054 7777111 -210260047 - L2 LINE L2 -5 3308 3251 660 330 90 44 chr3 7777160 7777615 -210259543 + LTR16C LTR ERVL 1 476 -15 495 270 0 0 chr3 7777629 7777740 -210259418 - MIR SINE MIR -115 147 37 1263 152 5 5 chr3 7777918 7778122 -210259036 + L1MB1 LINE L1 5960 6163 -5 587 233 166 14 chr3 7778156 7778379 -210258779 + MIR SINE MIR 6 262 0 1018 216 82 5 chr3 7779855 7780063 -210257095 + MER58A DNA MER1_type 1 224 0 3063 123 82 14 chr3 7780257 7780769 -210256389 - LTR10A LTR ERV1 -62 547 1 13665 205 16 21 chr3 7780818 7783896 -210253262 - LTR10A-int LTR ERV1 0 7784 4065 4985 81 33 0 chr3 7783867 7784585 -210252573 - Harlequin LTR ERV1 -4320 2576 1835 * 366 191 167 0 chr3 7784600 7784684 -210252474 + LTR8 LTR ERV1 156 253 -438 1428 91 5 5 chr3 7784688 7784886 -210252272 - LTR10A-int LTR ERV1 -2805 2781 2584 * 4632 235 14 27 chr3 7784857 7786086 -210251072 - LTR10A-int LTR ERV1 -3015 4112 2686 3141 189 5 6 chr3 7786066 7786786 -210250372 - LTR10A-int LTR ERV1 -3957 2692 2202 * 313 170 104 0 chr3 7786774 7786880 -210250278 - LTR10A-int LTR ERV1 -4705 1944 1828 * 327 157 0 0 chr3 7786897 7786967 -210250191 + CT-rich Low_complexity Low_complexity 2 71 0 4316 114 5 3 chr3 7786999 7787631 -210249527 - LTR10A-int LTR ERV1 -4783 1866 1234 2753 141 53 4 chr3 7787615 7788069 -210249089 - LTR10A-int LTR ERV1 -5628 1021 546 * 1584 180 21 7 chr3 7788183 7788467 -210248691 - LTR10A-int LTR ERV1 -6359 290 3 3096 126 78 17 chr3 7788480 7788996 -210248162 - LTR10A LTR ERV1 -62 547 1 294 241 41 76 chr3 7789522 7789667 -210247491 - L2 LINE L2 -2 3311 3172 435 277 124 10 chr3 7789677 7789879 -210247279 + MIR SINE MIR 31 255 -7 1885 177 111 60 chr3 7790100 7790621 -210246537 - LTR10A LTR ERV1 -61 548 1 17623 109 9 19 chr3 7790624 7793447 -210243711 - Harlequin LTR ERV1 -4 6645 1899 12342 57 1 3 chr3 7793447 7795714 -210241444 - L1PA5 LINE L1 0 6154 3903 17623 109 9 19 chr3 7795714 7795808 -210241350 - Harlequin LTR ERV1 -4750 1899 1806 342 238 167 0 chr3 7795809 7795893 -210241265 + LTR8 LTR ERV1 156 253 -438 4754 96 0 34 chr3 7795895 7796711 -210240447 - Harlequin LTR ERV1 -5176 1720 886 475 259 91 112 chr3 7797089 7797429 -210239729 - L2 LINE L2 -1 3271 2939 373 253 0 0 chr3 7797429 7797508 -210239650 - MER116 DNA Mariner 0 80 2 3319 166 25 77 chr3 7798110 7798839 -210238319 - LTR8 LTR ERV1 0 691 1 530 283 27 16 chr3 7799721 7799905 -210237253 - MIR SINE MIR -19 243 58 723 206 32 0 chr3 7799931 7800057 -210237101 - FLAM_A SINE Alu -12 130 1 332 385 37 7 chr3 7800091 7800226 -210236932 + MER5A DNA MER1_type 14 152 -37 345 197 215 5 chr3 7800745 7800854 -210236304 - MER5A DNA MER1_type 0 189 48 * 420 208 146 8 chr3 7800843 7800973 -210236185 - MER5A DNA MER1_type -41 148 1 252 248 9 124 chr3 7801204 7801317 -210235841 + MIR SINE MIR 82 181 -81 472 333 85 30 chr3 7801371 7801701 -210235457 + LTR33 LTR ERVL 105 452 -69 425 269 80 35 chr3 7802151 7802352 -210234806 + MLT1J LTR MaLR 301 510 -1 357 325 0 0 chr3 7802505 7802585 -210234573 + L2 LINE L2 3174 3253 -19 21 36 0 0 chr3 7802934 7802962 -210234196 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 7803754 7803775 -210233383 + AT_rich Low_complexity Low_complexity 1 21 0 380 330 46 71 chr3 7803885 7804474 -210232684 - L2 LINE L2 -2 3311 2741 1829 229 25 15 chr3 7804561 7804963 -210232195 + MLT2D LTR ERVL 1 406 -8 880 216 114 24 chr3 7805637 7805934 -210231224 + MER5C DNA MER1_type 1 324 0 23 0 0 0 chr3 7806698 7806721 -210230437 + AT_rich Low_complexity Low_complexity 1 23 0 480 195 27 87 chr3 7807285 7807434 -210229724 - MER5A DNA MER1_type -46 143 4 2093 148 0 7 chr3 7807980 7808290 -210228868 + AluSq SINE Alu 1 308 -5 474 190 153 21 chr3 7808306 7808484 -210228674 - MER58 DNA MER1_type -1 2419 1 2298 114 0 0 chr3 7808561 7808858 -210228300 - AluSc SINE Alu -12 297 1 2166 77 46 3 chr3 7808860 7809145 -210228013 - AluSx SINE Alu -15 297 1 21 0 0 0 chr3 7809145 7809166 -210227992 + AT_rich Low_complexity Low_complexity 1 21 0 407 286 160 28 chr3 7809675 7809888 -210227270 - MIR SINE MIR -11 251 11 189 107 0 0 chr3 7810066 7810094 -210227064 + (TCCCC)n Simple_repeat Simple_repeat 3 30 0 346 108 31 0 chr3 7810217 7810282 -210226876 + C-rich Low_complexity Low_complexity 4 70 0 1138 199 28 5 chr3 7810546 7810757 -210226401 - MER58A DNA MER1_type -3 221 6 663 306 41 30 chr3 7811017 7811288 -210225870 + MLT1G1 LTR MaLR 11 284 -311 354 23 0 0 chr3 7811491 7811534 -210225624 + (CA)n Simple_repeat Simple_repeat 1 43 0 865 236 15 10 chr3 7811709 7811904 -210225254 + MER58A DNA MER1_type 21 216 -8 509 281 84 0 chr3 7811910 7812077 -210225081 + MLT1G1 LTR MaLR 410 590 0 621 269 31 62 chr3 7813380 7813637 -210223521 + MIR SINE MIR 7 255 -7 2005 136 48 57 chr3 7814330 7814807 -210222351 + ERVL-B1 LTR ERVL 5285 5757 -7 1091 228 31 49 chr3 7814807 7815244 -210221914 + MLT2B1 LTR ERVL 1 434 -30 456 51 0 0 chr3 7815244 7815303 -210221855 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 1091 228 31 49 chr3 7815303 7815334 -210221824 + MLT2B1 LTR ERVL 434 464 0 444 180 0 22 chr3 7815509 7815598 -210221560 + LTR16A1 LTR ERVL 371 457 0 196 152 0 0 chr3 7816790 7816823 -210220335 + MIR SINE MIR 157 189 -73 304 294 101 0 chr3 7817259 7817378 -210219780 - MER117 DNA MER1_type -65 132 2 526 162 48 0 chr3 7817460 7817565 -210219593 - L1PA11 LINE L1 0 6174 6065 1226 198 42 6 chr3 7817778 7818091 -210219067 + MER33 DNA MER1_type 1 324 0 225 288 45 30 chr3 7818419 7818485 -210218673 + L2 LINE L2 3166 3232 -40 591 293 164 8 chr3 7818629 7818885 -210218273 - LTR16C LTR ERVL -10 481 186 275 322 71 31 chr3 7820233 7820462 -210216696 + L2 LINE L2 2772 3009 -263 209 181 193 48 chr3 7820928 7821011 -210216147 + L2 LINE L2 3219 3313 0 529 272 26 79 chr3 7821901 7822302 -210214856 + L2 LINE L2 2569 3029 -243 1679 215 28 50 chr3 7822320 7822785 -210214373 + MLT2B1 LTR ERVL 6 460 -60 258 280 57 64 chr3 7822854 7823011 -210214147 + L2 LINE L2 3122 3277 -36 2206 101 0 14 chr3 7823638 7823924 -210213234 - AluSc SINE Alu -8 301 20 2038 138 7 0 chr3 7824397 7824686 -210212472 - AluSx SINE Alu -19 293 3 180 0 0 0 chr3 7824783 7824803 -210212355 + (A)n Simple_repeat Simple_repeat 1 20 0 257 248 40 40 chr3 7824898 7824999 -210212159 - Charlie7 DNA MER1_type -2506 106 6 433 188 38 47 chr3 7825352 7825552 -210211606 + MER5C DNA MER1_type 3 280 -44 956 244 58 46 chr3 7825555 7825949 -210211209 + L1MA9 LINE L1 5876 6274 -38 202 189 0 0 chr3 7825993 7826030 -210211128 + MER5C DNA MER1_type 288 324 0 1770 72 0 32 chr3 7826240 7826491 -210210667 + L1PA6 LINE L1 5912 6154 0 323 278 38 15 chr3 7826767 7826900 -210210258 + MIR SINE MIR 79 214 -48 185 402 43 0 chr3 7826955 7827072 -210210086 - L2 LINE L2 -1 3312 3191 235 390 41 8 chr3 7827108 7827231 -210209927 + L2 LINE L2 3143 3269 -3 435 280 148 7 chr3 7827257 7827591 -210209567 - LTR16C LTR ERVL -31 460 50 25 0 0 0 chr3 7827812 7827837 -210209321 + AT_rich Low_complexity Low_complexity 1 25 0 463 300 176 5 chr3 7828171 7828381 -210208777 - MIR SINE MIR -12 250 5 362 264 50 41 chr3 7831112 7831233 -210205925 - L2 LINE L2 -1 3312 3191 2160 127 3 3 chr3 7831239 7831539 -210205619 - AluSx SINE Alu -12 300 1 235 361 31 0 chr3 7831605 7831735 -210205423 - MIR SINE MIR -6 256 123 389 289 49 14 chr3 7831754 7831896 -210205262 - MIR SINE MIR 0 262 116 356 213 53 43 chr3 7832308 7832402 -210204756 - MIR3 SINE MIR -15 193 99 701 235 42 0 chr3 7832673 7832839 -210204319 - MER5B DNA MER1_type -5 173 1 463 344 46 15 chr3 7832895 7833090 -210204068 - MIR SINE MIR -4 258 58 246 225 25 12 chr3 7833511 7833591 -210203567 + MLT1L LTR MaLR 181 261 -354 247 244 122 0 chr3 7834168 7834250 -210202908 + MLT1L LTR MaLR 517 608 -7 639 311 6 0 chr3 7834266 7834443 -210202715 - MER45A DNA AcHobo 0 178 1 180 326 54 71 chr3 7835752 7835936 -210201222 + L2 LINE L2 2873 3053 -219 1526 120 6 28 chr3 7836166 7836441 -210200717 - L1PA16 LINE L1 -457 5727 5462 1450 123 27 116 chr3 7836457 7836959 -210200199 + L1PA16 LINE L1 5719 6129 -2 222 313 104 0 chr3 7837111 7837178 -210199980 + L2 LINE L2 3240 3313 0 660 233 29 71 chr3 7838250 7838565 -210198593 - MLT1E2 LTR MaLR -304 201 2 394 313 46 0 chr3 7839586 7839717 -210197441 + L2 LINE L2 2670 2806 -508 192 206 143 32 chr3 7839721 7839784 -210197374 + MER5C DNA MER1_type 1 70 -254 272 288 25 0 chr3 7839894 7839974 -210197184 + (TATATG)n Simple_repeat Simple_repeat 6 87 0 426 256 22 112 chr3 7840023 7840335 -210196823 + L2 LINE L2 3020 3303 -10 219 186 0 0 chr3 7840378 7840421 -210196737 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 213 39 0 0 chr3 7840421 7840447 -210196711 + (CA)n Simple_repeat Simple_repeat 2 27 0 3828 148 43 40 chr3 7840450 7841223 -210195935 - LTR1 LTR ERV1 0 785 11 229 247 82 24 chr3 7842108 7842193 -210194965 - MIR SINE MIR -70 192 103 889 230 25 0 chr3 7842302 7842537 -210194621 + L1MA9 LINE L1 6035 6275 -37 531 261 84 104 chr3 7842638 7842786 -210194372 - L1MC4 LINE L1 -1 8041 7892 486 0 0 0 chr3 7842786 7842840 -210194318 + (CA)n Simple_repeat Simple_repeat 2 55 0 1110 195 125 35 chr3 7842842 7843155 -210194003 - MER2 DNA MER2_type -3 341 1 531 261 84 104 chr3 7843155 7843762 -210193396 - L1MC4 LINE L1 -151 7891 7298 613 268 93 34 chr3 7843775 7844163 -210192995 - L1M4 LINE L1 -3042 3104 2694 1100 200 17 13 chr3 7844272 7844572 -210192586 - L1MEc LINE L1 -1388 4692 4392 2126 224 48 64 chr3 7844584 7844859 -210192299 - L1MEc LINE L1 -2701 3379 3101 3123 127 8 0 chr3 7844859 7845341 -210191817 + LTR19A LTR ERV1 1 486 0 2126 224 48 64 chr3 7845341 7845507 -210191651 - L1MEc LINE L1 -2979 3101 2934 7107 57 18 3 chr3 7845507 7847026 -210190132 - L1PA6 LINE L1 -8 6146 4616 2126 224 48 64 chr3 7847026 7847484 -210189674 - L1MEc LINE L1 -3146 2934 2494 512 277 90 30 chr3 7847608 7848139 -210189019 - L1MEc LINE L1 -4574 1687 1125 2710 194 39 28 chr3 7848206 7848896 -210188262 - L1MA9 LINE L1 -108 6204 5507 226 281 117 10 chr3 7848930 7849229 -210187929 - L1MEc LINE L1 -5056 1014 684 272 150 33 0 chr3 7849229 7849289 -210187869 + (CTATT)n Simple_repeat Simple_repeat 1 62 0 257 239 60 26 chr3 7849600 7849717 -210187441 - L1MC4 LINE L1 -820 7222 7102 904 279 106 19 chr3 7849731 7850264 -210186894 - L1MC4 LINE L1 -886 6993 6346 355 167 0 0 chr3 7850267 7850333 -210186825 - L1ME2 LINE L1 -11 6153 6088 873 165 16 5 chr3 7851420 7851608 -210185550 - L1MC3 LINE L1 -1 7784 7595 1892 221 51 26 chr3 7851663 7852130 -210185028 - MLT2B1 LTR ERVL -41 479 1 1528 232 41 14 chr3 7852130 7852617 -210184541 + L1MC4 LINE L1 7542 8041 -1 2482 84 0 0 chr3 7852649 7852960 -210184198 - AluY SINE Alu 0 311 1 300 267 44 11 chr3 7853066 7853156 -210184002 - L2 LINE L2 -10 3303 3211 300 359 56 26 chr3 7853230 7853425 -210183733 - L2 LINE L2 -671 2643 2443 2445 61 0 0 chr3 7854000 7854297 -210182861 - AluY SINE Alu -10 301 5 230 253 44 33 chr3 7854335 7854426 -210182732 + HAL1 LINE L1 151 242 -2265 395 303 44 26 chr3 7854503 7854774 -210182384 + HAL1 LINE L1 2229 2504 -3 493 215 74 60 chr3 7855138 7855287 -210181871 - MER5B DNA MER1_type 0 178 28 400 296 8 0 chr3 7855389 7855521 -210181637 + MER117 DNA MER1_type 5 137 -60 23 0 0 0 chr3 7855610 7855633 -210181525 + AT_rich Low_complexity Low_complexity 1 23 0 248 325 105 44 chr3 7855808 7855922 -210181236 + L2 LINE L2 3144 3264 -8 426 283 46 16 chr3 7856575 7856886 -210180272 + MLT1G1 LTR MaLR 1 292 -298 577 286 68 32 chr3 7857244 7857464 -210179694 + MIR SINE MIR 32 259 -3 2303 62 7 36 chr3 7858097 7858402 -210178756 + AluY SINE Alu 1 296 -15 3208 70 14 0 chr3 7859567 7860122 -210177036 + L1P3 LINE L1 5137 5700 -454 366 235 137 10 chr3 7860276 7860378 -210176780 + LTR33 LTR ERVL 78 192 -329 26 0 0 0 chr3 7860853 7860879 -210176279 + AT_rich Low_complexity Low_complexity 1 26 0 1228 205 15 11 chr3 7860964 7861290 -210175868 + MSTD LTR MaLR 13 396 0 183 129 0 0 chr3 7862528 7862559 -210174599 + (A)n Simple_repeat Simple_repeat 1 31 0 21 36 0 0 chr3 7862612 7862640 -210174518 + AT_rich Low_complexity Low_complexity 1 28 0 1170 50 0 38 chr3 7863042 7863201 -210173957 - AluY SINE Alu -1 310 158 198 304 63 13 chr3 7864427 7864506 -210172652 + MIR3 SINE MIR 118 200 -8 473 287 0 17 chr3 7865648 7865763 -210171395 - L2 LINE L2 -1 3271 3159 1501 250 108 14 chr3 7865788 7866280 -210170878 - MLT1F LTR MaLR -2 540 3 317 371 5 27 chr3 7866424 7866610 -210170548 - L2 LINE L2 -237 3035 2854 229 122 0 0 chr3 7866757 7866798 -210170360 - L1MB3 LINE L1 -7 6176 6136 1989 213 6 15 chr3 7866804 7867273 -210169885 - L1MB4 LINE L1 -114 6066 5602 443 111 10 61 chr3 7867297 7867396 -210169762 - L1MA5 LINE L1 0 6300 6207 2433 90 0 13 chr3 7867410 7867721 -210169437 - AluSg SINE Alu -3 307 1 1895 126 7 32 chr3 7868619 7868928 -210168230 + AluSx SINE Alu 1 301 -11 413 165 10 0 chr3 7870226 7870323 -210166835 + CT-rich Low_complexity Low_complexity 3 100 0 1096 306 126 61 chr3 7871823 7872902 -210164256 + L2 LINE L2 1986 3168 -145 1985 127 7 0 chr3 7872902 7873193 -210163965 + AluY SINE Alu 1 293 -18 1096 306 126 61 chr3 7873193 7873350 -210163808 + L2 LINE L2 3168 3313 0 198 420 23 0 chr3 7873515 7873646 -210163512 - L2 LINE L2 -345 2968 2835 1189 195 125 8 chr3 7873696 7873952 -210163206 - AluJb SINE Alu -19 293 8 185 237 32 75 chr3 7874502 7874595 -210162563 + MIR SINE MIR 174 262 0 991 171 28 32 chr3 7874664 7874880 -210162278 + MER20 DNA MER1_type 1 215 -4 233 289 36 12 chr3 7874964 7875047 -210162111 + L2 LINE L2 3185 3269 -3 478 316 23 6 chr3 7875550 7875721 -210161437 + MER5B DNA MER1_type 3 176 -2 217 278 42 14 chr3 7876077 7876149 -210161009 - L2 LINE L2 -2 3270 3197 726 212 7 0 chr3 7877114 7877251 -210159907 + MER5A DNA MER1_type 2 139 -50 482 168 147 7 chr3 7877269 7877412 -210159746 - L1MC3 LINE L1 -187 7598 7436 266 197 42 0 chr3 7877421 7877492 -210159666 - L1ME2 LINE L1 -1 6163 6090 292 210 0 0 chr3 7877494 7877556 -210159602 + MER5A DNA MER1_type 127 188 -1 198 286 48 0 chr3 7877773 7877836 -210159322 - MIR SINE MIR 0 262 197 12665 135 32 10 chr3 7877844 7880022 -210157136 + Tigger1 DNA MER2_type 24 2249 -169 317 127 82 9 chr3 7880033 7880143 -210157015 + (TA)n Simple_repeat Simple_repeat 2 119 0 263 60 15 104 chr3 7880143 7880210 -210156948 + LTR66 LTR ERVL 379 439 -171 1566 197 50 9 chr3 7880258 7880578 -210156580 + LTR32 LTR ERVL 15 347 -124 666 232 0 19 chr3 7880678 7880833 -210156325 + LTR32 LTR ERVL 320 471 0 922 113 0 33 chr3 7880833 7880983 -210156175 + Tigger1 DNA MER2_type 2274 2418 0 246 358 20 47 chr3 7881507 7881655 -210155503 + MER5A DNA MER1_type 31 174 -15 718 233 28 128 chr3 7882867 7882910 -210154248 - MLT2D LTR ERVL -1 413 367 321 26 0 0 chr3 7882910 7882948 -210154210 + (TG)n Simple_repeat Simple_repeat 2 39 0 718 233 28 128 chr3 7882948 7883363 -210153795 - MLT2D LTR ERVL -47 367 1 3342 155 16 75 chr3 7883788 7884522 -210152636 + LTR8 LTR ERV1 1 691 0 604 290 6 0 chr3 7886707 7886869 -210150289 - MIR SINE MIR -8 254 92 465 256 80 8 chr3 7886922 7887047 -210150111 - MER45A DNA AcHobo -44 134 1 180 111 0 0 chr3 7887128 7887155 -210150003 + (T)n Simple_repeat Simple_repeat 1 27 0 1105 93 3 2 chr3 7887198 7887495 -210149663 + THE1A LTR MaLR 1 355 0 187 326 0 0 chr3 7890094 7890137 -210147021 - MIR SINE MIR -10 252 210 451 312 145 14 chr3 7891188 7891409 -210145749 - MIR SINE MIR 0 262 13 183 372 88 9 chr3 7891465 7891578 -210145580 + L2 LINE L2 3147 3268 -4 1147 209 83 55 chr3 7891666 7892102 -210145056 + LTR37B LTR ERV1 21 468 0 23 0 0 0 chr3 7892121 7892144 -210145014 + AT_rich Low_complexity Low_complexity 1 23 0 504 313 55 20 chr3 7892194 7892395 -210144763 - MIR SINE MIR -46 216 9 704 291 58 21 chr3 7892515 7892756 -210144402 - MIR SINE MIR 0 262 13 1770 128 89 13 chr3 7893277 7893581 -210143577 - MER1B DNA MER1_type 0 339 13 390 288 6 106 chr3 7893766 7893936 -210143222 - MER5A DNA MER1_type -36 153 1 207 222 0 48 chr3 7894178 7894241 -210142917 + GA-rich Low_complexity Low_complexity 1 60 0 1354 195 91 21 chr3 7894396 7894525 -210142633 + MLT1A1 LTR MaLR 3 121 -244 2345 84 7 0 chr3 7894525 7894823 -210142335 + AluY SINE Alu 6 305 -6 1354 195 91 21 chr3 7894823 7895032 -210142126 + MLT1A1 LTR MaLR 121 365 0 267 295 71 27 chr3 7895345 7895457 -210141701 + L2 LINE L2 3153 3269 -3 321 241 19 46 chr3 7896503 7896611 -210140547 - MLT1G1 LTR MaLR -25 570 466 510 289 50 5 chr3 7896688 7896929 -210140229 - MLT1H1 LTR MaLR -291 264 8 727 272 110 4 chr3 7896929 7897157 -210140001 + MIR SINE MIR 11 262 0 2556 61 0 0 chr3 7899005 7899316 -210137842 + AluY SINE Alu 1 311 0 22 0 0 0 chr3 7899410 7899432 -210137726 + AT_rich Low_complexity Low_complexity 1 22 0 219 209 12 23 chr3 7899547 7899633 -210137525 + (TTA)n Simple_repeat Simple_repeat 3 87 0 211 203 31 0 chr3 7899901 7899965 -210137193 + CT-rich Low_complexity Low_complexity 3 68 0 852 202 52 15 chr3 7900151 7900418 -210136740 + Charlie1b DNA MER1_type 149 425 -98 10022 38 4 1 chr3 7900421 7902421 -210134737 - L1PA4 LINE L1 -2 6153 4144 2755 40 0 0 chr3 7902421 7902775 -210134383 + L1P LINE L1 3831 4184 -1962 251 222 62 37 chr3 7902786 7902867 -210134291 + Charlie1b DNA MER1_type 435 517 -6 472 309 101 53 chr3 7903022 7903700 -210133458 - L1M4 LINE L1 -1085 5061 4356 279 185 31 15 chr3 7903989 7904054 -210133104 - MSTB2 LTR MaLR -391 66 1 1159 174 28 0 chr3 7905114 7905326 -210131832 - MER20 DNA MER1_type -1 218 1 27 62 0 0 chr3 7906560 7906608 -210130550 + AT_rich Low_complexity Low_complexity 1 48 0 2167 118 0 3 chr3 7906687 7906984 -210130174 + AluSg SINE Alu 1 296 -14 243 329 27 7 chr3 7907095 7907241 -210129917 - L1ME LINE L1 -233 5888 5740 1715 200 115 16 chr3 7907373 7907798 -210129360 + MLT1C LTR MaLR 1 467 0 182 197 15 76 chr3 7908052 7908118 -210129040 - MIR SINE MIR -16 246 185 410 269 15 54 chr3 7909786 7909916 -210127242 - L2 LINE L2 0 3272 3148 2381 67 0 0 chr3 7911425 7911736 -210125422 - AluY SINE Alu 0 311 1 442 316 58 12 chr3 7912129 7912300 -210124858 + MER5A DNA MER1_type 3 181 -8 509 304 40 13 chr3 7912921 7913145 -210124013 + MIR SINE MIR 33 262 0 274 222 74 28 chr3 7913505 7913613 -210123545 + LTR67 LTR ERVL 442 554 -3 285 302 37 12 chr3 7913712 7913894 -210123264 - L1ME LINE L1 -242 5879 5694 2410 191 57 28 chr3 7915157 7915792 -210121366 - Charlie1b DNA MER1_type -18 505 2091 1038 183 33 15 chr3 7915792 7916138 -210121020 - MER31B LTR ERV1 -72 394 1 * 2954 214 70 30 chr3 7916138 7916897 -210120261 - Charlie1a DNA MER1_type -664 791 2 330 26 0 0 chr3 7917013 7917052 -210120106 + (TG)n Simple_repeat Simple_repeat 2 40 0 356 265 0 10 chr3 7917052 7917154 -210120004 + GA-rich Low_complexity Low_complexity 2 102 0 248 322 0 33 chr3 7917235 7917325 -210119833 - LTR16C LTR ERVL 0 491 405 867 101 62 0 chr3 7918113 7918242 -210118916 + AluSc SINE Alu 165 301 -8 272 328 104 13 chr3 7918380 7918697 -210118461 + L1ME4a LINE L1 5598 5943 -178 2584 20 0 0 chr3 7920060 7920352 -210116806 + AluY SINE Alu 1 292 -19 546 355 22 16 chr3 7920912 7921095 -210116063 - MER91A DNA MER1_type -12 184 1 1004 262 32 26 chr3 7921767 7922080 -210115078 - MER110 LTR ERV1 0 491 177 198 217 33 67 chr3 7922659 7922719 -210114439 + MIR SINE MIR 99 145 -63 601 259 49 11 chr3 7922749 7922934 -210114224 - MIR SINE MIR -13 249 58 341 320 28 118 chr3 7923180 7923536 -210113622 - L3 LINE CR1 -208 1369 1046 446 330 14 46 chr3 7923794 7924012 -210113146 + MIR SINE MIR 26 236 -26 2038 148 3 0 chr3 7924483 7924781 -210112377 - AluSx SINE Alu -13 299 1 222 258 54 54 chr3 7925893 7925986 -210111172 - MIR SINE MIR -94 168 76 1429 265 41 89 chr3 7926154 7927059 -210110099 - L1ME LINE L1 -5182 888 28 769 238 16 21 chr3 7927303 7927492 -210109666 - MER58A DNA MER1_type 0 224 37 4534 150 29 37 chr3 7928564 7929025 -210108133 - Tigger1 DNA MER2_type -9 2409 1957 3590 87 8 0 chr3 7929025 7929519 -210107639 + L1PA14 LINE L1 5664 6161 0 4534 150 29 37 chr3 7929519 7929898 -210107260 - Tigger1 DNA MER2_type -461 1957 1576 15122 167 18 24 chr3 7929904 7935912 -210101246 - L1MA3 LINE L1 0 7724 1091 333 0 0 0 chr3 7935912 7935949 -210101209 + (TG)n Simple_repeat Simple_repeat 2 38 0 15122 167 18 24 chr3 7935949 7937020 -210100138 - L1MA3 LINE L1 -6633 1091 16 9815 131 30 1 chr3 7937020 7938544 -210098614 - Tigger1 DNA MER2_type -828 1590 24 358 258 13 71 chr3 7939480 7939494 -210097664 + MER5A DNA MER1_type 1 5 -184 292 238 62 94 chr3 7939494 7939654 -210097504 - MER5A DNA MER1_type -2 187 33 561 327 115 4 chr3 7940639 7940865 -210096293 - MIR SINE MIR -10 252 2 185 292 0 31 chr3 7941073 7941138 -210096020 - MIR3 SINE MIR -13 195 133 261 0 0 0 chr3 7941297 7941326 -210095832 + (T)n Simple_repeat Simple_repeat 1 29 0 471 260 78 32 chr3 7941436 7941590 -210095568 - MIR SINE MIR 0 262 102 198 0 0 0 chr3 7941650 7941672 -210095486 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 8294 118 17 33 chr3 7942774 7944071 -210093087 - THE1B-int LTR MaLR -300 1280 5 2129 146 30 0 chr3 7944082 7944417 -210092741 - THE1B LTR MaLR -12 352 8 554 212 48 7 chr3 7944459 7944605 -210092553 - L1MD2 LINE L1 -13 6582 6431 3263 205 28 20 chr3 7944606 7945468 -210091690 - L1MD1 LINE L1 -208 6270 5515 2750 188 21 0 chr3 7945469 7945938 -210091220 - LTR42 LTR ERVL 0 495 17 279 273 0 15 chr3 7945956 7946022 -210091136 - PABL_B-int LTR ERV1 -696 6062 5998 432 302 0 0 chr3 7946270 7946376 -210090782 - PABL_B-int LTR ERV1 -450 6672 6567 207 0 0 0 chr3 7946527 7946550 -210090608 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 207 69 0 0 chr3 7947335 7947364 -210089794 + (A)n Simple_repeat Simple_repeat 1 29 0 295 321 44 44 chr3 7947931 7948313 -210088845 - HERVL18 LTR ERVL -1266 4077 3763 281 336 25 21 chr3 7948699 7948934 -210088224 - HERVL18 LTR ERVL -2542 3505 3270 883 329 56 46 chr3 7949110 7949839 -210087319 - HERVL18 LTR ERVL -2407 2959 2193 2085 171 53 19 chr3 7949839 7950254 -210086904 + MSTB1 LTR MaLR 4 432 0 883 329 56 46 chr3 7950254 7950735 -210086423 - HERVL18 LTR ERVL -3173 2193 1718 2564 175 50 8 chr3 7952525 7953000 -210084158 - LTR42 LTR ERVL 0 495 1 1549 253 6 37 chr3 7953000 7953509 -210083649 - L1MD1 LINE L1 -866 5516 5024 452 284 50 44 chr3 7953516 7953789 -210083369 - L1MD1 LINE L1 -3686 2696 2414 1700 189 0 0 chr3 7953789 7954086 -210083072 - AluJb SINE Alu -15 297 1 452 284 50 44 chr3 7954086 7954231 -210082927 - L1MD1 LINE L1 -3968 2414 2271 445 318 61 20 chr3 7954529 7955013 -210082145 - L1MD1 LINE L1 -4512 1870 1266 393 365 66 5 chr3 7955301 7955512 -210081646 - L1MD1 LINE L1 -5451 921 698 847 163 94 0 chr3 7955832 7955992 -210081166 + FRAM SINE Alu 1 174 -2 2746 84 25 5 chr3 7956059 7956453 -210080705 - L1PA13 LINE L1 0 6163 5762 1416 211 33 86 chr3 7956462 7956941 -210080217 + L1ME3 LINE L1 5709 6162 0 334 226 24 36 chr3 7957740 7957824 -210079334 + L2 LINE L2 3189 3271 -1 236 264 38 0 chr3 7958086 7958139 -210079019 - L2 LINE L2 -11 3261 3207 211 258 21 62 chr3 7958625 7958722 -210078436 + MIR SINE MIR 170 262 0 481 332 35 26 chr3 7958752 7958984 -210078174 + MIR SINE MIR 12 245 -17 247 310 0 0 chr3 7960560 7960618 -210076540 + polypyrimidine Low_complexity Low_complexity 3 60 0 25 0 0 0 chr3 7963844 7963869 -210073289 + AT_rich Low_complexity Low_complexity 1 25 0 768 261 86 27 chr3 8014075 8014596 -210022562 - HAL1b LINE L1 0 1348 797 243 61 0 0 chr3 8015218 8015251 -210021907 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2059 108 0 31 chr3 8015253 8015541 -210021617 - AluSx SINE Alu -33 279 1 208 256 179 96 chr3 8016561 8016717 -210020441 - MIR3 SINE MIR -38 170 2 340 266 190 32 chr3 8017105 8017329 -210019829 + L1ME4a LINE L1 5701 5959 -162 744 237 41 46 chr3 8017394 8017613 -210019545 + MER20 DNA MER1_type 2 219 0 2590 123 5 2 chr3 8018166 8018566 -210018592 + L1PB1 LINE L1 5751 6151 0 23 54 0 0 chr3 8018566 8018603 -210018555 + AT_rich Low_complexity Low_complexity 1 37 0 359 295 100 53 chr3 8018607 8019092 -210018066 - L1MC/D LINE L1 -747 5938 5783 1880 217 61 68 chr3 8019113 8019671 -210017487 + MLT2B3 LTR ERVL 1 554 0 2217 287 76 24 chr3 8019722 8021668 -210015490 - L1MC/D LINE L1 -1007 5533 3467 * 10331 204 24 32 chr3 8021665 8025384 -210011774 - L1PA16 LINE L1 -2 6164 2475 3506 281 86 15 chr3 8025380 8025670 -210011488 - L1MC/D LINE L1 -5149 1391 1123 * 9262 34 1 19 chr3 8025670 8027603 -210009555 - L1PA3 LINE L1 0 6155 4243 3506 281 86 15 chr3 8027603 8028586 -210008572 - L1MC/D LINE L1 -5417 1123 27 1895 286 100 38 chr3 8028589 8030948 -210006210 - L1ME LINE L1 -2295 3785 1302 498 251 107 2 chr3 8030950 8031132 -210006026 + MER58A DNA MER1_type 9 213 0 462 95 0 0 chr3 8031105 8031168 -210005990 + MADE1 DNA Mariner 1 63 -17 * 268 258 51 73 chr3 8031177 8031355 -210005803 - L1ME LINE L1 -4929 1151 978 334 268 176 35 chr3 8031420 8031529 -210005629 - L1ME LINE L1 -5148 934 842 2382 80 6 6 chr3 8031529 8031842 -210005316 - AluSq SINE Alu 0 313 1 334 268 176 35 chr3 8031842 8032052 -210005106 - L1ME LINE L1 -5240 842 677 2319 45 28 0 chr3 8032851 8033140 -210004018 + AluY SINE Alu 1 297 -14 242 216 54 40 chr3 8033140 8033214 -210003944 - MER72 LTR ERV1 -643 79 5 804 155 14 20 chr3 8033216 8033364 -210003794 - FRAM SINE Alu -26 150 4 2325 78 10 0 chr3 8033380 8033675 -210003483 - AluSc SINE Alu -11 298 1 421 211 41 88 chr3 8033701 8033872 -210003286 + L1MC4a LINE L1 5730 5892 -1916 1833 151 18 0 chr3 8033873 8034152 -210003006 + AluSx SINE Alu 1 284 -28 2434 57 0 0 chr3 8034152 8034448 -210002710 + AluY SINE Alu 1 296 -15 347 281 34 0 chr3 8034949 8035038 -210002120 - L2 LINE L2 0 3313 3222 207 100 0 0 chr3 8035141 8035171 -210001987 + (CATA)n Simple_repeat Simple_repeat 2 31 0 862 303 85 8 chr3 8036513 8036876 -210000282 - MLT1I LTR MaLR 0 409 19 572 283 72 0 chr3 8037120 8037300 -209999858 - LTR16C LTR ERVL -2 489 297 317 272 19 19 chr3 8037313 8037416 -209999742 - LTR16B LTR ERVL 0 464 362 494 326 80 5 chr3 8037484 8037671 -209999487 - LTR16B LTR ERVL -263 201 1 348 326 96 17 chr3 8037678 8037856 -209999302 - LTR16C LTR ERVL -210 281 90 2260 109 0 6 chr3 8038041 8038352 -209998806 + AluSq SINE Alu 1 309 -4 388 217 12 12 chr3 8038484 8038567 -209998591 + MIR SINE MIR 86 168 -94 358 274 44 9 chr3 8038581 8038694 -209998464 + MIR SINE MIR 94 210 -52 399 313 94 40 chr3 8038940 8039215 -209997943 + MLT1J LTR MaLR 218 507 -4 203 260 41 55 chr3 8039490 8039563 -209997595 - MIR SINE MIR 0 262 191 389 97 14 0 chr3 8040182 8040254 -209996904 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 2062 131 86 0 chr3 8040271 8040607 -209996551 + Tigger2 DNA MER2_type 2353 2717 -1 234 81 0 0 chr3 8040607 8040644 -209996514 + (TG)n Simple_repeat Simple_repeat 2 38 0 316 179 208 38 chr3 8041332 8041438 -209995720 - L3 LINE CR1 -116 1461 1338 185 108 27 0 chr3 8041717 8041754 -209995404 + A-rich Low_complexity Low_complexity 1 38 0 709 224 0 34 chr3 8041928 8042075 -209995083 + Tigger3(Golem) DNA MER2_type 1 142 -2887 * 1382 177 4 38 chr3 8042073 8042226 -209994932 + Tigger3(Golem) DNA MER2_type 2782 2924 -114 1702 225 80 104 chr3 8042226 8043072 -209994086 + LTR1B LTR ERV1 1 826 0 1382 177 4 38 chr3 8043072 8043184 -209993974 + Tigger3(Golem) DNA MER2_type 2924 3038 0 586 264 52 26 chr3 8043634 8043903 -209993255 - MER97c DNA MER1_type? -1 1089 814 875 259 95 15 chr3 8044181 8044443 -209992715 - MER97b DNA MER1_type? -447 606 324 574 273 65 96 chr3 8044579 8044628 -209992530 + MLT1J LTR MaLR 166 215 -296 1793 116 0 4 chr3 8044628 8044878 -209992280 + AluSg SINE Alu 47 295 -15 574 273 65 96 chr3 8044878 8045150 -209992008 + MLT1J LTR MaLR 215 477 -34 181 214 309 0 chr3 8045315 8045399 -209991759 + MIR SINE MIR 142 251 -11 659 230 105 0 chr3 8045680 8045832 -209991326 + MER96 DNA MER1_type? 8 175 0 545 272 11 88 chr3 8046081 8046364 -209990794 - L1ME3 LINE L1 0 6162 5902 * 1121 246 62 22 chr3 8046361 8046825 -209990333 - L1M4 LINE L1 -1715 4431 3949 2277 229 35 63 chr3 8046909 8047211 -209989947 - L1ME1 LINE L1 -44 6122 5813 1702 163 3 10 chr3 8047211 8047499 -209989659 - AluSx SINE Alu -26 286 1 2277 229 35 63 chr3 8047499 8047991 -209989167 - L1ME1 LINE L1 -353 5813 5350 6709 75 2 5 chr3 8048048 8049359 -209987799 - L1PA6 LINE L1 0 6154 4843 27124 40 3 0 chr3 8049361 8053434 -209983724 + L1PA4 LINE L1 2013 6092 -63 1926 218 46 3 chr3 8053933 8054323 -209982835 - ERVL LTR ERVL -4169 1595 1189 3269 243 73 4 chr3 8054323 8055122 -209982036 - ERVL LTR ERVL -4735 1029 176 634 271 65 72 chr3 8055396 8055920 -209981238 - L1MC4 LINE L1 -820 7222 6703 627 201 7 0 chr3 8055928 8056067 -209981091 - L1MA4A LINE L1 0 6303 6164 2275 189 33 2 chr3 8056067 8056553 -209980605 - L1 LINE L1 -1118 5028 4528 1251 230 84 44 chr3 8056753 8057096 -209980062 - LTR18A LTR ERVL 0 357 1 2012 123 0 32 chr3 8057097 8057406 -209979752 - HERVL18 LTR ERVL 0 6047 5749 1628 151 4 4 chr3 8057407 8057659 -209979499 - HERVL18 LTR ERVL -262 5785 5534 1654 290 39 31 chr3 8057974 8058560 -209978598 + MLT1E LTR MaLR 3 593 0 301 193 0 0 chr3 8058741 8058798 -209978360 - Charlie5 DNA MER1_type -27 2585 2529 37938 88 5 6 chr3 8058911 8064771 -209972387 - L1PA4 LINE L1 -292 5863 11 2183 261 79 19 chr3 8064778 8065677 -209971481 - L1M4 LINE L1 -789 5357 4405 644 224 93 52 chr3 8065717 8065866 -209971292 - L1MCc LINE L1 -6130 293 128 2075 148 0 3 chr3 8065866 8065884 -209971274 - AluSq SINE Alu -9 304 287 333 0 0 0 chr3 8065884 8065921 -209971237 + (TG)n Simple_repeat Simple_repeat 2 38 0 2075 148 0 3 chr3 8065921 8066206 -209970952 - AluSq SINE Alu -26 287 2 644 224 93 52 chr3 8066206 8066324 -209970834 - L1MCc LINE L1 -6295 128 16 479 270 96 17 chr3 8066329 8066684 -209970474 - L1M4 LINE L1 -3177 2969 2587 2016 121 7 33 chr3 8066695 8067001 -209970157 + AluSx SINE Alu 1 298 -14 527 291 24 12 chr3 8067011 8067262 -209969896 - L1M4 LINE L1 -3625 2521 2268 184 294 0 20 chr3 8067407 8067458 -209969700 - L2 LINE L2 -1 3312 3263 271 228 0 18 chr3 8068671 8068728 -209968430 - L2 LINE L2 -94 3219 3164 298 313 91 20 chr3 8070020 8070119 -209967039 + MIR SINE MIR 41 146 -62 294 29 0 0 chr3 8070446 8070481 -209966677 + (TG)n Simple_repeat Simple_repeat 1 35 0 189 373 59 0 chr3 8070519 8070621 -209966537 + L2 LINE L2 3151 3258 -14 1976 133 0 29 chr3 8070745 8071053 -209966105 - AluSx SINE Alu -13 299 1 350 228 60 92 chr3 8071755 8071939 -209965219 + MER5B DNA MER1_type 1 178 0 4236 158 44 31 chr3 8073274 8074186 -209962972 - L1MA9 LINE L1 -2 6310 5387 1092 132 114 9 chr3 8074184 8074411 -209962747 - L1PA15 LINE L1 0 6165 5915 * 557 198 0 16 chr3 8074409 8074530 -209962628 + L1P LINE L1 4527 4645 -1501 * 4127 151 20 35 chr3 8074543 8075261 -209961897 - L1PA15 LINE L1 -257 5908 5181 228 35 0 0 chr3 8075261 8075290 -209961868 + (TG)n Simple_repeat Simple_repeat 1 29 0 4127 151 20 35 chr3 8075290 8076102 -209961056 - L1PA15 LINE L1 -984 5181 4410 4896 214 20 7 chr3 8076112 8077275 -209959883 + L1P LINE L1 2995 4172 -1974 2158 147 57 22 chr3 8077276 8077789 -209959369 + MLT2A2 LTR ERVL 1 554 0 968 193 23 0 chr3 8077791 8078009 -209959149 + L1P LINE L1 4171 4393 -1753 * 3555 242 39 45 chr3 8078006 8078891 -209958267 - L1MA9 LINE L1 -748 5398 4509 1196 129 0 0 chr3 8078891 8079061 -209958097 - AluSq SINE Alu -11 302 133 3555 242 39 45 chr3 8079061 8079191 -209957967 - L1MA9 LINE L1 -1637 4509 4380 189 0 0 0 chr3 8079191 8079212 -209957946 + (TG)n Simple_repeat Simple_repeat 2 22 0 3555 242 39 45 chr3 8079212 8080239 -209956919 - L1MA9 LINE L1 -1766 4380 3293 1104 211 32 12 chr3 8080261 8080507 -209956651 + AluJo SINE Alu 61 311 -1 22 0 0 0 chr3 8080559 8080581 -209956577 + AT_rich Low_complexity Low_complexity 1 22 0 2427 76 0 0 chr3 8080581 8080884 -209956274 - AluY SINE Alu -8 303 1 384 235 53 8 chr3 8081116 8081248 -209955910 + MER113 DNA MER1_type? 1 138 -383 23 54 0 0 chr3 8081278 8081315 -209955843 + AT_rich Low_complexity Low_complexity 1 37 0 206 232 36 18 chr3 8084730 8084786 -209952372 - MIR SINE MIR -154 108 52 254 273 121 0 chr3 8085260 8085359 -209951799 - MLT1K LTR MaLR -106 482 372 1422 113 85 0 chr3 8085836 8086048 -209951110 + MER30 DNA MER1_type 1 230 0 436 299 17 69 chr3 8087175 8087406 -209949752 + MLT1G1 LTR MaLR 60 278 -317 920 112 11 28 chr3 8087542 8087720 -209949438 + (TTCC)n Simple_repeat Simple_repeat 2 176 0 475 306 121 94 chr3 8088291 8088469 -209948689 - L2 LINE L2 0 3272 3100 1659 86 18 0 chr3 8088469 8088691 -209948467 + MER30 DNA MER1_type 5 230 0 475 306 121 94 chr3 8088691 8089295 -209947863 - L2 LINE L2 -172 3100 2430 2167 121 0 0 chr3 8089295 8089600 -209947558 + AluSc SINE Alu 1 305 0 475 306 121 94 chr3 8089600 8089889 -209947269 - L2 LINE L2 -842 2430 2150 21 36 0 0 chr3 8089981 8090009 -209947149 + AT_rich Low_complexity Low_complexity 1 28 0 204 125 0 0 chr3 8090666 8090698 -209946460 + (TTCC)n Simple_repeat Simple_repeat 2 33 0 2522 74 0 0 chr3 8091446 8091758 -209945400 - AluSx SINE Alu 0 312 1 225 0 0 0 chr3 8092090 8092115 -209945043 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 246 105 0 0 chr3 8092145 8092183 -209944975 + (A)n Simple_repeat Simple_repeat 1 38 0 186 103 0 0 chr3 8092433 8092462 -209944696 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 291 235 92 50 chr3 8092524 8092643 -209944515 - L2 LINE L2 -61 3252 3129 1313 287 85 29 chr3 8092688 8093117 -209944041 + L2 LINE L2 2462 2929 -384 2464 213 25 46 chr3 8093117 8093752 -209943406 + MLT1E3 LTR MaLR 1 622 -2 1313 287 85 29 chr3 8093752 8093887 -209943271 + L2 LINE L2 2929 3055 -258 1971 153 155 23 chr3 8093956 8094388 -209942770 - LTR45B LTR ERV1 0 489 1 336 309 9 36 chr3 8094578 8094688 -209942470 + L2 LINE L2 3173 3279 -34 348 387 61 21 chr3 8094710 8094998 -209942160 - L2 LINE L2 -219 3094 2785 1674 212 111 3 chr3 8094998 8095384 -209941774 + MSTA LTR MaLR 1 428 0 348 387 61 21 chr3 8095384 8095451 -209941707 - L2 LINE L2 -528 2785 2722 223 295 49 0 chr3 8095759 8095820 -209941338 + L2 LINE L2 3228 3291 -22 281 325 145 30 chr3 8095889 8096089 -209941069 + MIR SINE MIR 40 262 0 2854 65 17 12 chr3 8096206 8096608 -209940550 - MLT2A1 LTR ERVL -40 404 1 2377 67 0 7 chr3 8096620 8096918 -209940240 - AluY SINE Alu -15 296 1 24 0 0 0 chr3 8097996 8098020 -209939138 + AT_rich Low_complexity Low_complexity 1 24 0 288 319 115 44 chr3 8098292 8098474 -209938684 - LTR16C LTR ERVL -9 482 288 272 164 0 36 chr3 8099363 8099418 -209937740 - MIR SINE MIR -98 164 112 838 179 48 42 chr3 8099427 8099595 -209937563 - MER5A DNA MER1_type -20 169 1 201 292 186 9 chr3 8099647 8099760 -209937398 + L2 LINE L2 3134 3266 -6 282 244 108 114 chr3 8100371 8100547 -209936611 + MER5B DNA MER1_type 4 178 0 1097 181 67 99 chr3 8100555 8100709 -209936449 - MER58B DNA MER1_type -2079 341 184 1852 156 54 23 chr3 8100709 8101062 -209936096 - THE1B LTR MaLR 0 364 1 10896 103 35 0 chr3 8101062 8102589 -209934569 - THE1B-int LTR MaLR 0 1580 1 1879 154 78 23 chr3 8102589 8102934 -209934224 - THE1B LTR MaLR 0 364 1 1097 181 67 99 chr3 8102934 8103119 -209934039 - MER58B DNA MER1_type -2233 187 11 1140 164 37 85 chr3 8104516 8104906 -209932252 - MLT1A1 LTR MaLR -4 392 1 1637 212 113 42 chr3 8105777 8106281 -209930877 - MLT1F LTR MaLR 0 542 3 341 277 63 19 chr3 8106623 8106782 -209930376 - L1ME LINE L1 -570 5551 5386 22 0 0 0 chr3 8106895 8106917 -209930241 + AT_rich Low_complexity Low_complexity 1 22 0 1948 158 43 3 chr3 8108128 8108475 -209928683 + MER46B DNA MER2_type 1 236 0 187 237 68 93 chr3 8108983 8109101 -209928057 + MIR SINE MIR 147 261 -1 234 105 0 0 chr3 8109822 8109860 -209927298 + (CA)n Simple_repeat Simple_repeat 2 39 0 249 261 11 11 chr3 8110190 8110282 -209926876 - MLT1I LTR MaLR -8 401 310 248 181 28 17 chr3 8111013 8111085 -209926073 - MLT1J1 LTR MaLR -328 118 45 566 134 0 0 chr3 8111186 8111283 -209925875 - L1P LINE L1 -1389 4757 4661 3490 65 0 0 chr3 8111283 8111766 -209925392 + L1PA8 LINE L1 5691 6173 0 560 255 108 28 chr3 8112268 8112480 -209924678 + MIR SINE MIR 34 262 0 180 111 0 0 chr3 8112637 8112664 -209924494 + (CCA)n Simple_repeat Simple_repeat 1 27 0 349 121 69 0 chr3 8112677 8112735 -209924423 + ERVL LTR ERVL 4862 4923 -841 309 26 0 0 chr3 8112740 8112778 -209924380 + (CA)n Simple_repeat Simple_repeat 2 39 0 257 75 25 0 chr3 8112905 8112945 -209924213 + (TG)n Simple_repeat Simple_repeat 2 42 0 251 282 9 0 chr3 8113091 8113201 -209923957 + (TA)n Simple_repeat Simple_repeat 1 111 0 1591 231 5 21 chr3 8113203 8113580 -209923578 - MLT2D LTR ERVL -43 371 1 760 192 0 30 chr3 8113580 8113747 -209923411 - ERVL-D LTR ERVL -7 5757 5596 288 158 0 0 chr3 8113747 8113804 -209923354 + (TA)n Simple_repeat Simple_repeat 1 57 0 180 158 0 0 chr3 8113854 8113892 -209923266 + (TA)n Simple_repeat Simple_repeat 1 38 0 271 255 108 20 chr3 8114003 8114105 -209923053 - MIR SINE MIR -60 202 92 210 71 0 0 chr3 8114199 8114227 -209922931 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 1977 173 32 28 chr3 8116197 8116745 -209920413 - MLT2A2 LTR ERVL 0 554 2 1949 91 22 0 chr3 8117439 8117714 -209919444 + L1PA10 LINE L1 5879 6159 -9 396 0 0 0 chr3 8117715 8117759 -209919399 + (TA)n Simple_repeat Simple_repeat 2 45 0 23 33 0 0 chr3 8117787 8117817 -209919341 + AT_rich Low_complexity Low_complexity 1 30 0 738 243 117 73 chr3 8117895 8118288 -209918870 + MLT1D LTR MaLR 2 421 -84 2110 141 33 25 chr3 8118288 8118649 -209918509 + THE1B LTR MaLR 1 364 0 738 243 117 73 chr3 8118649 8118733 -209918425 + MLT1D LTR MaLR 421 500 -5 245 376 9 9 chr3 8118892 8119001 -209918157 - L2 LINE L2 -15 3298 3190 31 26 0 0 chr3 8119641 8119679 -209917479 + AT_rich Low_complexity Low_complexity 1 38 0 2409 46 0 3 chr3 8120172 8120489 -209916669 - AluY SINE Alu 0 316 1 216 308 13 13 chr3 8122012 8122090 -209915068 + CT-rich Low_complexity Low_complexity 2 79 0 498 254 65 72 chr3 8122184 8122723 -209914435 + L1ME3 LINE L1 4456 4990 -1156 354 281 102 10 chr3 8122822 8123018 -209914140 + L1ME3 LINE L1 5119 5332 -814 2120 138 3 3 chr3 8123065 8123377 -209913781 + AluSx SINE Alu 1 312 0 3292 165 78 44 chr3 8123435 8124276 -209912882 + L1MC3 LINE L1 6908 7777 -8 412 265 137 24 chr3 8124404 8124702 -209912456 + L1ME3 LINE L1 5560 5894 -276 608 191 0 17 chr3 8125048 8125163 -209911995 - FLAM_A SINE Alu -19 114 2 206 226 129 43 chr3 8126382 8126475 -209910683 - L2 LINE L2 -5 3308 3208 523 299 114 0 chr3 8126518 8126685 -209910473 + MIR SINE MIR 49 234 -28 199 188 0 0 chr3 8126785 8126817 -209910341 - MIR SINE MIR -16 246 215 2155 159 55 26 chr3 8127911 8128327 -209908831 - MSTC LTR MaLR 0 428 1 568 279 128 11 chr3 8128327 8128506 -209908652 - MIR SINE MIR -4 258 59 2614 108 59 16 chr3 8128675 8129033 -209908125 + MLT2A1 LTR ERVL 1 342 -102 321 26 0 0 chr3 8129033 8129071 -209908087 + (TC)n Simple_repeat Simple_repeat 2 39 0 189 0 0 0 chr3 8129070 8129091 -209908067 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 2614 108 59 16 chr3 8129071 8129158 -209908000 + MLT2A1 LTR ERVL 342 444 0 305 23 0 23 chr3 8129171 8129214 -209907944 + (TA)n Simple_repeat Simple_repeat 2 43 0 314 88 18 18 chr3 8129261 8129318 -209907840 + MLT2B1 LTR ERVL 464 520 0 27641 70 11 5 chr3 8129318 8133027 -209904131 + HERVL-B1-A1 LTR ERVL 1 3731 -1923 3949 134 176 28 chr3 8133027 8134014 -209903144 + MER11B LTR ERVK 1 1232 -4 14487 69 7 4 chr3 8134019 8135942 -209901216 + HERVL-B1-A1 LTR ERVL 3726 5654 0 1255 110 46 5 chr3 8135942 8136161 -209900997 + MLT2A1 LTR ERVL 1 228 -216 508 90 13 0 chr3 8136161 8136239 -209900919 + L1PA16 LINE L1 6079 6157 -9 323 291 57 19 chr3 8137145 8137303 -209899855 + MLT1K LTR MaLR 354 517 -71 22 70 0 0 chr3 8137801 8137844 -209899314 + AT_rich Low_complexity Low_complexity 1 43 0 394 241 143 0 chr3 8137892 8138025 -209899133 + MER103 DNA DNA 13 164 -2 213 291 121 21 chr3 8138146 8138287 -209898871 + MIR SINE MIR 72 226 -36 417 54 0 0 chr3 8138430 8138486 -209898672 + (CA)n Simple_repeat Simple_repeat 1 56 0 420 306 65 18 chr3 8139707 8139881 -209897277 - MIR SINE MIR -62 146 3 189 0 0 0 chr3 8141336 8141357 -209895801 + (CA)n Simple_repeat Simple_repeat 1 21 0 27 29 0 0 chr3 8141934 8141968 -209895190 + AT_rich Low_complexity Low_complexity 1 34 0 6479 48 0 0 chr3 8141968 8142788 -209894370 - L1PA5 LINE L1 -6 6148 5329 372 316 90 11 chr3 8144245 8144422 -209892736 - MIR SINE MIR -56 206 16 1227 217 126 7 chr3 8144635 8144944 -209892214 - MSTD LTR MaLR -50 346 1 723 251 108 35 chr3 8145313 8145655 -209891503 + MER110A LTR ERV1 40 406 -62 23595 134 52 50 chr3 8145693 8150549 -209886609 - L1P LINE L1 -1268 4878 12 1083 146 25 33 chr3 8150685 8150925 -209886233 - THE1C LTR MaLR -2 373 136 27584 132 17 55 chr3 8150925 8156908 -209880250 - L1P3 LINE L1 -401 5753 13 8735 141 24 28 chr3 8156917 8158440 -209878718 - THE1C-int LTR MaLR -63 1517 1 1695 160 26 50 chr3 8158442 8158824 -209878334 - THE1C LTR MaLR -2 373 1 495 0 0 0 chr3 8159080 8159135 -209878023 + (CA)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr3 8159197 8159218 -209877940 + AT_rich Low_complexity Low_complexity 1 21 0 1007 253 0 0 chr3 8159432 8159653 -209877505 + MER58A DNA MER1_type 1 221 -3 242 243 157 0 chr3 8159666 8159757 -209877401 + MER5A DNA MER1_type 4 112 -77 253 250 11 11 chr3 8161755 8161843 -209875315 + MLT1J1 LTR MaLR 341 428 -18 192 188 83 0 chr3 8162181 8162229 -209874929 + L2 LINE L2 3221 3272 0 205 254 0 70 chr3 8163138 8163209 -209873949 + MIR SINE MIR 197 262 0 634 318 102 27 chr3 8163595 8164139 -209873019 - L2 LINE L2 0 3313 2730 514 304 44 0 chr3 8165088 8165269 -209871889 - MER5A DNA MER1_type 0 189 1 1687 246 22 44 chr3 8166190 8166243 -209870915 + L1MA8 LINE L1 466 519 -6970 180 0 0 0 chr3 8166243 8166263 -209870895 + (CA)n Simple_repeat Simple_repeat 1 20 0 1687 246 22 44 chr3 8166263 8166704 -209870454 + L1MA8 LINE L1 519 949 -6540 1856 244 31 30 chr3 8166865 8167642 -209869516 + L1MA8 LINE L1 2018 2763 -4802 * 2840 208 48 37 chr3 8167634 8167823 -209869335 + L1MA8 LINE L1 3636 3821 -3744 2621 163 45 60 chr3 8167823 8168444 -209868714 + LTR9 LTR ERV1 1 612 0 2840 208 48 37 chr3 8168444 8169084 -209868074 + L1MA8 LINE L1 3821 4474 -3091 3320 174 17 8 chr3 8169087 8169686 -209867472 - MER50 LTR ERV1 -20 714 111 960 187 38 8 chr3 8169697 8169959 -209867199 - L1 LINE L1 -2813 3333 3064 317 238 0 40 chr3 8169960 8170061 -209867097 + MER50 LTR ERV1 1 97 -637 10123 173 24 27 chr3 8170070 8173135 -209864023 + L1MA8 LINE L1 4657 7709 -1 268 219 0 184 chr3 8173248 8173362 -209863796 + MER63 DNA MER1_type 2 720 -342 617 234 83 5 chr3 8173424 8173616 -209863542 + MER63 DNA MER1_type 838 1044 -18 912 306 62 12 chr3 8173616 8174034 -209863124 - LTR16B LTR ERVL -23 441 3 1955 185 55 47 chr3 8174294 8174716 -209862442 - MSTB LTR MaLR 0 426 2 938 279 20 8 chr3 8175310 8175561 -209861597 + MIR SINE MIR 1 254 -8 273 57 0 0 chr3 8175562 8175597 -209861561 + (CAT)n Simple_repeat Simple_repeat 1 35 0 222 329 24 24 chr3 8176860 8176942 -209860216 + MIR SINE MIR 11 92 -170 246 216 196 41 chr3 8177529 8177626 -209859532 - MLT1K LTR MaLR -326 262 151 23 0 0 0 chr3 8178380 8178403 -209858755 + AT_rich Low_complexity Low_complexity 1 23 0 240 344 96 24 chr3 8179717 8179842 -209857316 + MER5A DNA MER1_type 34 167 -22 494 299 123 25 chr3 8180528 8181056 -209856102 + HAL1 LINE L1 735 1314 -1193 1139 292 73 41 chr3 8181235 8182057 -209855101 + HAL1 LINE L1 1627 2474 -33 2289 214 49 43 chr3 8182666 8183221 -209853937 - MER74A LTR ERVL 0 558 1 288 303 115 8 chr3 8183692 8183814 -209853344 - MER117 DNA MER1_type -29 168 34 249 336 79 58 chr3 8183862 8184103 -209853055 - L2 LINE L2 -202 3070 2825 371 240 41 18 chr3 8184112 8184283 -209852875 + (TA)n Simple_repeat Simple_repeat 1 175 0 27 73 0 0 chr3 8184288 8184343 -209852815 + AT_rich Low_complexity Low_complexity 1 55 0 566 289 27 0 chr3 8184396 8184545 -209852613 - MIR SINE MIR -108 154 2 350 300 64 27 chr3 8185866 8185976 -209851182 + L2 LINE L2 3139 3252 -20 200 182 0 0 chr3 8186194 8186227 -209850931 + (CAAAG)n Simple_repeat Simple_repeat 4 36 0 386 167 77 13 chr3 8186435 8186513 -209850645 - LTR54 LTR ERV1 -427 83 1 658 235 109 53 chr3 8186751 8186806 -209850352 + MER5C DNA MER1_type 6 56 -268 5393 48 31 3 chr3 8186806 8187507 -209849651 + LTR30 LTR ERV1 1 721 -1 658 235 109 53 chr3 8187507 8187753 -209849405 + MER5C DNA MER1_type 56 324 0 248 0 31 0 chr3 8187805 8187837 -209849321 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2100 79 0 0 chr3 8188173 8188480 -209848678 - AluY SINE Alu 0 307 1 265 341 53 8 chr3 8188777 8188909 -209848249 - MIR SINE MIR -6 256 119 25 65 0 0 chr3 8189162 8189208 -209847950 + AT_rich Low_complexity Low_complexity 1 46 0 595 213 0 31 chr3 8189208 8189335 -209847823 - AluJb SINE Alu -189 123 1 964 246 5 5 chr3 8189337 8189548 -209847610 - MER58A DNA MER1_type -10 214 4 1295 153 60 0 chr3 8191467 8191682 -209845476 + MER30 DNA MER1_type 3 230 0 287 395 0 0 chr3 8191696 8191830 -209845328 + MIR SINE MIR 31 164 -98 246 243 90 54 chr3 8192329 8192440 -209844718 - MLT1J2 LTR MaLR -302 148 34 761 163 0 0 chr3 8192489 8192612 -209844546 + FLAM_C SINE Alu 1 123 -20 903 229 25 4 chr3 8193443 8193683 -209843475 - L1MA4 LINE L1 -5 6295 6051 198 338 38 0 chr3 8193739 8193819 -209843339 + L2 LINE L2 3231 3313 0 709 260 105 47 chr3 8193933 8194229 -209842929 - MLT1I LTR MaLR -95 314 2 242 262 0 39 chr3 8194891 8194994 -209842164 + CT-rich Low_complexity Low_complexity 3 101 0 188 282 39 64 chr3 8195034 8195112 -209842046 - L2 LINE L2 -19 3294 3219 280 336 69 30 chr3 8195637 8195768 -209841390 - L2 LINE L2 0 3272 3137 1454 141 0 4 chr3 8195983 8196224 -209840934 - L1MA4 LINE L1 -5 6295 6056 1018 276 22 63 chr3 8196327 8196453 -209840705 - L1ME3A LINE L1 -5 6165 6035 2311 41 7 3 chr3 8196453 8196745 -209840413 + AluY SINE Alu 1 293 -18 1018 276 22 63 chr3 8196745 8197063 -209840095 - L1ME3A LINE L1 -135 6035 5739 368 232 108 77 chr3 8197095 8197354 -209839804 - MER113 DNA MER1_type? -236 285 19 283 306 194 11 chr3 8197832 8197916 -209839242 - MIR SINE MIR -18 244 177 1373 207 107 52 chr3 8197916 8198395 -209838763 + MLT1D LTR MaLR 1 505 0 283 306 194 11 chr3 8198395 8198496 -209838662 - MIR SINE MIR -85 177 25 488 264 54 86 chr3 8198707 8199021 -209838137 - MLT1K LTR MaLR -24 564 261 304 304 0 49 chr3 8200136 8200238 -209836920 - MIR3 SINE MIR -45 163 67 391 336 17 0 chr3 8200334 8200453 -209836705 + L2 LINE L2 3184 3304 -9 438 324 105 5 chr3 8201650 8201869 -209835289 + MIR SINE MIR 16 256 -6 295 309 9 45 chr3 8202537 8202647 -209834511 - L2 LINE L2 -5 3308 3203 * 694 290 42 9 chr3 8202626 8202843 -209834315 - MIR SINE MIR -2 260 37 209 336 112 14 chr3 8203103 8203246 -209833912 + MIR SINE MIR 100 256 -6 21 36 0 0 chr3 8205068 8205096 -209832062 + AT_rich Low_complexity Low_complexity 1 28 0 2605 39 0 3 chr3 8205188 8205493 -209831665 + AluY SINE Alu 1 304 -7 327 49 0 0 chr3 8205985 8206026 -209831132 + (TG)n Simple_repeat Simple_repeat 2 42 0 1071 207 9 26 chr3 8206660 8206887 -209830271 + MER58A DNA MER1_type 1 223 -1 216 291 13 25 chr3 8207349 8207428 -209829730 + MIR3 SINE MIR 122 199 -9 818 201 4 107 chr3 8208593 8208837 -209828321 + MER20 DNA MER1_type 1 219 0 332 268 108 56 chr3 8210134 8210298 -209826860 - MIR3 SINE MIR -15 193 20 395 173 12 0 chr3 8210366 8210447 -209826711 + MER53 DNA DNA 101 182 -7 489 223 236 0 chr3 8211262 8211419 -209825739 + MIR SINE MIR 14 207 -55 2319 83 0 10 chr3 8211720 8212020 -209825138 + AluSc SINE Alu 1 297 -12 261 329 12 0 chr3 8212029 8212114 -209825044 + L2 LINE L2 3182 3267 -5 1041 256 78 43 chr3 8213241 8213612 -209823546 + MLT1I LTR MaLR 26 409 0 249 384 0 0 chr3 8214326 8214425 -209822733 + MIR SINE MIR 52 150 -112 191 349 39 29 chr3 8215688 8215798 -209821360 + MIR SINE MIR 16 127 -81 998 217 109 29 chr3 8215864 8216177 -209820981 - MER58B DNA MER1_type -3 338 1 398 284 71 13 chr3 8216207 8216362 -209820796 + MLT1J2 LTR MaLR 287 450 0 285 338 40 15 chr3 8217238 8217434 -209819724 + MIR SINE MIR 7 206 -56 272 155 14 0 chr3 8217561 8217632 -209819526 + CT-rich Low_complexity Low_complexity 1 72 0 375 73 0 0 chr3 8217636 8217691 -209819467 + (CA)n Simple_repeat Simple_repeat 2 56 0 2447 264 48 13 chr3 8218639 8219389 -209817769 + MER20B DNA MER1_type 8 783 0 430 367 87 31 chr3 8219645 8219934 -209817224 - L3 LINE CR1 -7 1570 1266 376 374 92 18 chr3 8220437 8220827 -209816331 + L2 LINE L2 2892 3310 -3 183 291 255 7 chr3 8220916 8221057 -209816101 - L3 LINE CR1 -330 1247 1072 7625 23 0 4 chr3 8221212 8222238 -209814920 - L1PA4 LINE L1 -2 6153 5128 238 333 0 0 chr3 8222842 8222908 -209814250 - MER117 DNA MER1_type -8 189 124 282 326 109 42 chr3 8223976 8224169 -209812989 - MIR SINE MIR -14 248 43 264 380 78 14 chr3 8224428 8224570 -209812588 - L2 LINE L2 -5 3267 3117 1027 81 5 38 chr3 8225123 8225129 -209812029 + (TTTC)n Simple_repeat Simple_repeat 1 185 0 1027 81 5 38 chr3 8225129 8225315 -209811843 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1888 164 10 6 chr3 8225722 8226033 -209811125 + AluSx SINE Alu 1 312 0 394 195 46 0 chr3 8226109 8226196 -209810962 - MLT1H LTR MaLR -1 548 458 692 282 29 31 chr3 8226273 8226557 -209810601 - MLT1H LTR MaLR -222 327 1 282 163 24 171 chr3 8227603 8227726 -209809432 - L2 LINE L2 -5 3308 3204 297 53 0 0 chr3 8228380 8228418 -209808740 + U3 snRNA snRNA 1 38 -179 547 308 51 40 chr3 8228593 8228846 -209808312 - MIR SINE MIR -5 257 2 222 179 0 89 chr3 8228911 8228967 -209808191 + MIR SINE MIR 103 153 -109 210 71 0 0 chr3 8229359 8229387 -209807771 + (TG)n Simple_repeat Simple_repeat 1 28 0 800 134 12 18 chr3 8229453 8229617 -209807541 + CT-rich Low_complexity Low_complexity 4 166 0 1518 169 19 8 chr3 8229621 8229881 -209807277 - AluJb SINE Alu -38 274 12 907 288 58 27 chr3 8230280 8230572 -209806586 + L3 LINE CR1 1166 1466 -111 566 335 162 34 chr3 8230833 8230899 -209806259 + L2 LINE L2 2054 2110 -1204 1846 187 12 0 chr3 8230899 8231242 -209805916 - MER7A DNA MER2_type -1 345 1 566 335 162 34 chr3 8231242 8231730 -209805428 + L2 LINE L2 2110 2679 -635 232 379 92 15 chr3 8231855 8232244 -209804914 + L2 LINE L2 2687 3142 -171 366 322 94 35 chr3 8232410 8232612 -209804546 + MIR SINE MIR 13 226 -36 350 294 22 0 chr3 8232784 8232876 -209804282 + L1M4 LINE L1 707 800 -5742 5047 227 81 53 chr3 8233275 8234925 -209802233 + L1MB7 LINE L1 -248 1447 -4833 745 250 66 19 chr3 8234949 8235184 -209801974 + L1MB7 LINE L1 1594 1813 -4571 4401 222 42 11 chr3 8235276 8236321 -209800837 + L1MB7 LINE L1 4387 5519 -901 2529 145 33 9 chr3 8236321 8236742 -209800416 - Tigger2a DNA MER2_type -3 431 1 4401 222 42 11 chr3 8236742 8237543 -209799615 + L1MB7 LINE L1 5519 6293 -127 579 270 104 26 chr3 8237980 8238210 -209798948 - MLT1L LTR MaLR 0 615 368 426 20 0 0 chr3 8238367 8238418 -209798740 + (TG)n Simple_repeat Simple_repeat 2 52 0 219 273 0 0 chr3 8240202 8240257 -209796901 + (TA)n Simple_repeat Simple_repeat 1 55 0 1483 211 19 14 chr3 8240319 8240684 -209796474 + L1MB8 LINE L1 5811 6177 -1 252 0 0 0 chr3 8241486 8241514 -209795644 + (T)n Simple_repeat Simple_repeat 1 28 0 333 332 109 31 chr3 8241533 8241726 -209795432 - MER102b DNA MER1_type -6 335 128 236 311 133 0 chr3 8242398 8242488 -209794670 - MIR3 SINE MIR -93 115 14 3803 117 21 54 chr3 8245992 8246693 -209790465 + L1MA5A LINE L1 5619 6296 -1 4388 80 173 49 chr3 8246862 8247597 -209789561 - LTR12 LTR ERV1 0 826 1 442 0 0 33 chr3 8247768 8247828 -209789330 + (TA)n Simple_repeat Simple_repeat 2 59 0 1583 196 0 16 chr3 8248116 8248428 -209788730 + AluJo SINE Alu 1 307 -5 595 131 0 0 chr3 8248579 8248663 -209788495 - LTR12 LTR ERV1 -151 563 480 306 297 17 0 chr3 8248663 8248781 -209788377 - LTR30 LTR ERV1 -79 643 524 842 57 205 0 chr3 8248781 8248903 -209788255 - LTR12 LTR ERV1 -456 258 112 329 299 18 18 chr3 8248903 8249107 -209788051 + (TA)n Simple_repeat Simple_repeat 1 204 0 4356 32 2 2 chr3 8249203 8249698 -209787460 - SVA Other Other -17 1369 875 623 255 134 89 chr3 8249709 8249962 -209787196 + L1MC5 LINE L1 6711 6951 -1010 360 0 0 0 chr3 8249962 8250002 -209787156 + (TG)n Simple_repeat Simple_repeat 1 40 0 623 255 134 89 chr3 8250002 8250254 -209786904 + L1MC5 LINE L1 6951 7239 -722 2373 172 73 36 chr3 8250302 8250889 -209786269 - L1MB7 LINE L1 -20 6164 5556 753 241 42 31 chr3 8250877 8251138 -209786020 + L1MC5 LINE L1 7268 7531 -430 * 1613 141 84 0 chr3 8251143 8251332 -209785826 - AluSx SINE Alu 0 333 110 216 0 0 0 chr3 8251332 8251356 -209785802 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1613 141 84 0 chr3 8251356 8251477 -209785681 - AluSx SINE Alu -223 110 1 2641 153 47 10 chr3 8251792 8252277 -209784881 - L1MC1 LINE L1 -9 6324 5822 23 33 0 0 chr3 8252531 8252561 -209784597 + AT_rich Low_complexity Low_complexity 1 30 0 261 316 153 20 chr3 8253328 8253629 -209783529 + MLT1H LTR MaLR 22 362 -187 249 229 0 0 chr3 8253677 8253725 -209783433 + MLT1H LTR MaLR 501 548 -1 248 369 34 45 chr3 8253747 8253923 -209783235 + L2 LINE L2 2931 3104 -168 214 215 141 89 chr3 8254055 8254190 -209782968 + MIR SINE MIR 121 262 0 927 225 63 106 chr3 8254247 8254768 -209782390 - L1MC5 LINE L1 -838 7123 6625 3711 180 12 8 chr3 8254769 8255502 -209781656 - L1MA8 LINE L1 -3 6288 5553 1127 207 152 30 chr3 8255867 8256341 -209780817 - L1MC5 LINE L1 -302 7659 7128 274 167 167 67 chr3 8256366 8256456 -209780702 + L1MC5 LINE L1 6930 7028 -933 191 307 132 44 chr3 8256687 8256801 -209780357 + L2 LINE L2 3172 3295 -18 252 130 0 0 chr3 8257641 8257687 -209779471 + (TATG)n Simple_repeat Simple_repeat 1 46 0 292 306 131 45 chr3 8259512 8259711 -209777447 + MIR SINE MIR 2 217 -45 299 157 333 0 chr3 8260276 8260378 -209776780 + MER103 DNA DNA 16 151 -15 516 267 22 15 chr3 8260398 8260533 -209776625 - MIR SINE MIR -5 257 122 300 23 0 45 chr3 8261688 8261732 -209775426 - L1PA8 LINE L1 -6 6166 6125 306 167 22 11 chr3 8262596 8262686 -209774472 + (TA)n Simple_repeat Simple_repeat 2 92 0 3622 181 16 68 chr3 8264493 8265342 -209771816 + Tigger6a DNA MER2_type 1 805 -278 3381 191 37 4 chr3 8265358 8266066 -209771092 - L1MD1 LINE L1 -7 6629 5899 3133 254 24 41 chr3 8266073 8266728 -209770430 - L1MD1 LINE L1 -1602 4938 4312 5420 18 0 2 chr3 8266728 8267351 -209769807 - L1PA3 LINE L1 0 6155 5534 3133 254 24 41 chr3 8267351 8267933 -209769225 - L1MD1 LINE L1 -2228 4312 3722 * 5294 216 57 25 chr3 8267928 8270146 -209767012 - L1MD1 LINE L1 -4009 2531 18 1065 177 55 19 chr3 8270149 8270420 -209766738 + Tigger6a DNA MER2_type 803 1083 0 196 368 58 0 chr3 8270503 8270590 -209766568 - L2 LINE L2 -33 3280 3189 286 321 18 0 chr3 8270850 8270959 -209766199 - MIR SINE MIR -58 204 94 362 365 207 22 chr3 8271353 8271715 -209765443 + L2 LINE L2 2836 3264 -8 373 288 54 9 chr3 8273284 8273395 -209763763 + L2 LINE L2 3193 3308 -5 206 62 31 0 chr3 8273398 8273430 -209763728 + (TGGA)n Simple_repeat Simple_repeat 4 36 0 299 318 80 66 chr3 8273713 8274062 -209763096 + L3 LINE CR1 1199 1552 -25 300 91 0 0 chr3 8274525 8274569 -209762589 + (TC)n Simple_repeat Simple_repeat 1 44 0 243 306 0 14 chr3 8274569 8274641 -209762517 + MIR SINE MIR 189 259 -3 299 322 43 9 chr3 8275548 8275663 -209761495 + MIR3 SINE MIR 82 200 -8 225 94 0 0 chr3 8276996 8277028 -209760130 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 432 151 226 0 chr3 8277028 8277134 -209760024 - L1MB4 LINE L1 -95 6085 5956 192 443 0 0 chr3 8277300 8277388 -209759770 + L2 LINE L2 3162 3249 -23 24 0 0 0 chr3 8278567 8278591 -209758567 + AT_rich Low_complexity Low_complexity 1 24 0 216 267 0 0 chr3 8278958 8279003 -209758155 + MIR SINE MIR 29 73 -135 1586 241 28 19 chr3 8279928 8280360 -209756798 - MER110 LTR ERV1 -4 487 52 860 181 7 7 chr3 8281184 8281333 -209755825 - FRAM SINE Alu -30 146 1 539 282 6 28 chr3 8282277 8282458 -209754700 - MER5B DNA MER1_type -1 177 1 360 320 53 8 chr3 8282628 8282762 -209754396 - MIR SINE MIR -66 142 34 2050 139 53 11 chr3 8284443 8284803 -209752355 + THE1C LTR MaLR 1 375 0 203 387 43 0 chr3 8286114 8286207 -209750951 + MIR3 SINE MIR 63 159 -49 309 341 73 8 chr3 8286291 8286459 -209750699 - MIR SINE MIR -61 147 10 3327 110 47 4 chr3 8286826 8287316 -209749842 - MER9 LTR ERVK 0 511 1 680 314 65 14 chr3 8287323 8287613 -209749545 - MLT1K LTR MaLR -15 573 269 2208 123 16 21 chr3 8288349 8288722 -209748436 + THE1C LTR MaLR 1 371 -4 212 304 14 0 chr3 8288751 8288820 -209748338 - L2 LINE L2 -1 3271 3202 509 307 46 55 chr3 8289399 8289617 -209747541 - MIR SINE MIR -29 233 18 1650 193 24 24 chr3 8290054 8290463 -209746695 + L1MA10 LINE L1 5924 6332 -2 1857 86 0 0 chr3 8290495 8290753 -209746405 + AluY SINE Alu 50 307 0 1036 198 231 41 chr3 8291306 8291695 -209745463 + MLT2B1 LTR ERVL 6 534 -20 189 0 0 0 chr3 8291742 8291763 -209745395 + (TG)n Simple_repeat Simple_repeat 2 22 0 233 343 0 27 chr3 8292954 8293027 -209744131 + MIR SINE MIR 33 103 -105 180 0 0 0 chr3 8293596 8293616 -209743542 + (T)n Simple_repeat Simple_repeat 1 20 0 276 179 119 15 chr3 8293737 8293804 -209743354 + MLT1I LTR MaLR 336 409 0 230 282 0 137 chr3 8294127 8294251 -209742907 - MER5B DNA MER1_type -3 175 69 584 292 12 6 chr3 8294289 8294457 -209742701 + MIR SINE MIR 93 261 -1 187 270 43 61 chr3 8294562 8294677 -209742481 + L2 LINE L2 3184 3296 -17 4306 36 0 2 chr3 8295364 8295886 -209741272 - L1PA4 LINE L1 -6 6149 5629 10891 31 1 1 chr3 8295886 8297209 -209739949 + L1P LINE L1 4035 5358 -788 540 226 123 7 chr3 8297558 8297704 -209739454 - MER58B DNA MER1_type -4 337 175 25 31 0 0 chr3 8298313 8298345 -209738813 + AT_rich Low_complexity Low_complexity 1 32 0 366 226 0 43 chr3 8298494 8298587 -209738571 - L1MC4 LINE L1 -1340 6702 6614 530 303 142 43 chr3 8300264 8300985 -209736173 - L2 LINE L2 -111 3202 2360 675 296 186 31 chr3 8301810 8302229 -209734929 - MLT1G1 LTR MaLR -36 559 76 1629 148 21 4 chr3 8302302 8302716 -209734442 + L1PA16 LINE L1 5117 5539 -627 1793 133 81 27 chr3 8302716 8303048 -209734110 + L1PA16 LINE L1 5807 6156 -10 269 377 15 8 chr3 8304111 8304241 -209732917 + L2 LINE L2 2238 2368 -946 1027 277 65 34 chr3 8304276 8304720 -209732438 + MLT1C LTR MaLR 10 467 0 451 355 77 31 chr3 8304774 8305126 -209732032 + L2 LINE L2 2480 2847 -467 4988 204 43 19 chr3 8305129 8307129 -209730029 - L1MC2 LINE L1 -10 6334 4295 610 162 8 0 chr3 8307233 8307350 -209729808 - L1MB3 LINE L1 -19 6164 6047 2573 52 0 0 chr3 8307351 8307660 -209729498 - AluY SINE Alu -2 309 1 2027 182 84 25 chr3 8307669 8308147 -209729011 - L1MB3 LINE L1 -1 6182 5677 188 314 20 0 chr3 8308523 8308574 -209728584 + L2 LINE L2 2541 2592 -722 554 154 103 45 chr3 8308744 8308850 -209728308 - L1MCb LINE L1 -4103 2461 2342 1002 211 63 89 chr3 8308850 8309233 -209727925 + MLT1A2 LTR MaLR 1 373 -1 554 154 103 45 chr3 8309233 8309282 -209727876 - L1MCb LINE L1 -4222 2342 2297 5164 179 31 10 chr3 8309292 8310615 -209726543 - L1PA16 LINE L1 0 6166 4810 2307 155 22 89 chr3 8310617 8311209 -209725949 + L1PA16 LINE L1 4265 4816 -1330 * 2832 216 101 56 chr3 8311199 8311389 -209725769 - L1MCb LINE L1 -4260 2304 2124 1860 136 25 0 chr3 8311389 8311697 -209725461 + AluSq SINE Alu 1 315 0 2832 216 101 56 chr3 8311697 8311931 -209725227 - L1MCb LINE L1 -4440 2124 1902 637 54 0 21 chr3 8311931 8312024 -209725134 - L1PA8 LINE L1 0 6172 6082 2832 216 101 56 chr3 8312024 8313725 -209723433 - L1MCb LINE L1 -4662 1902 3 223 345 0 62 chr3 8313778 8313866 -209723292 + L2 LINE L2 2868 2949 -364 3199 138 53 0 chr3 8313866 8314417 -209722741 + LTR19B LTR ERV1 1 580 0 223 345 0 62 chr3 8314417 8314441 -209722717 + L2 LINE L2 2949 2973 -340 184 295 156 8 chr3 8314556 8314678 -209722480 + L2 LINE L2 3144 3283 -30 27 29 0 0 chr3 8316234 8316268 -209720890 + AT_rich Low_complexity Low_complexity 1 34 0 195 129 0 0 chr3 8316788 8316819 -209720339 + (CATA)n Simple_repeat Simple_repeat 4 34 0 1635 57 0 0 chr3 8316891 8317084 -209720074 + AluY SINE Alu 110 302 -9 1057 224 23 0 chr3 8317405 8317624 -209719534 - MER58A DNA MER1_type 0 224 1 638 214 53 78 chr3 8317634 8317840 -209719318 - MER3 DNA MER1_type -1 208 8 281 224 0 53 chr3 8318048 8318124 -209719034 + MIR SINE MIR 112 183 -79 470 362 25 5 chr3 8318224 8318423 -209718735 + MIR SINE MIR 42 244 -18 21 0 0 0 chr3 8318538 8318559 -209718599 + AT_rich Low_complexity Low_complexity 1 21 0 270 267 22 44 chr3 8319022 8319112 -209718046 + MER81 DNA DNA 27 114 0 1552 175 22 56 chr3 8319277 8319597 -209717561 + AluJo SINE Alu 1 309 -3 268 163 82 0 chr3 8320035 8320084 -209717074 - MER5B DNA MER1_type -3 175 123 2575 102 66 31 chr3 8320092 8320259 -209716899 + L1PA10 LINE L1 5730 5890 -278 2243 114 0 3 chr3 8320259 8320565 -209716593 + AluSg SINE Alu 1 305 -5 2575 102 66 31 chr3 8320565 8320820 -209716338 + L1PA10 LINE L1 5890 6167 -1 331 357 16 8 chr3 8320902 8321031 -209716127 - MER5B DNA MER1_type -48 130 1 264 30 0 0 chr3 8321063 8321096 -209716062 + (CA)n Simple_repeat Simple_repeat 1 33 0 226 275 116 0 chr3 8321104 8321173 -209715985 + MIR SINE MIR 39 115 -93 1837 151 48 12 chr3 8322664 8322995 -209714163 + MER2 DNA MER2_type 2 344 0 543 194 73 0 chr3 8325255 8325379 -209711779 - L1MA9 LINE L1 0 6312 6180 2293 102 0 0 chr3 8325405 8325708 -209711450 + AluSc SINE Alu 1 303 -6 263 317 41 8 chr3 8325736 8325859 -209711299 + MIR SINE MIR 136 262 0 2123 70 0 3 chr3 8326724 8327011 -209710147 - L1PA5 LINE L1 0 6154 5869 576 221 8 31 chr3 8328197 8328324 -209708834 + MER21B LTR ERV1 343 466 -397 29 28 0 0 chr3 8328874 8328910 -209708248 + AT_rich Low_complexity Low_complexity 1 36 0 2399 253 42 39 chr3 8330100 8331932 -209705226 + L1MCc LINE L1 807 2906 -4035 2240 98 3 0 chr3 8331932 8332237 -209704921 - AluSp SINE Alu -5 308 3 2399 253 42 39 chr3 8332237 8333273 -209703885 + L1MCc LINE L1 2906 3937 -3004 2264 97 20 0 chr3 8333279 8333577 -209703581 + AluSx SINE Alu 3 306 -6 3486 159 65 11 chr3 8333579 8334241 -209702917 + L1MC1 LINE L1 5635 6332 -1 374 341 33 76 chr3 8334275 8334395 -209702763 + L2 LINE L2 2876 2985 -328 2560 45 0 3 chr3 8334395 8334704 -209702454 - AluY SINE Alu -3 308 1 374 341 33 76 chr3 8334704 8334794 -209702364 + L2 LINE L2 2985 3077 -236 23 0 0 0 chr3 8334927 8334950 -209702208 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr3 8334951 8334974 -209702184 + (T)n Simple_repeat Simple_repeat 1 23 0 801 192 7 0 chr3 8334980 8335126 -209702032 + L1ME2 LINE L1 5452 5598 -735 647 165 0 0 chr3 8335138 8335259 -209701899 - L1MC/D LINE L1 -2542 5453 5333 369 262 197 35 chr3 8336444 8336902 -209700256 - MLT1H1 LTR MaLR -6 588 1 22 0 0 0 chr3 8337249 8337271 -209699887 + AT_rich Low_complexity Low_complexity 1 22 0 1901 64 0 49 chr3 8337323 8337587 -209699571 - AluY SINE Alu -13 298 48 515 253 123 30 chr3 8337758 8338027 -209699131 + MER46C DNA MER2_type 1 294 -44 243 227 149 58 chr3 8338059 8338213 -209698945 - MIR SINE MIR 0 262 95 26 0 0 0 chr3 8339524 8339550 -209697608 + AT_rich Low_complexity Low_complexity 1 26 0 3535 225 45 24 chr3 8340162 8341068 -209696090 - MER45B DNA AcHobo -27 1013 89 430 314 31 63 chr3 8342724 8342947 -209694211 - MIR SINE MIR -31 231 16 270 253 21 84 chr3 8343715 8343810 -209693348 - L2 LINE L2 -2 3311 3223 773 204 25 6 chr3 8343849 8344006 -209693152 + MER97a DNA MER1_type? 20 179 -715 976 261 65 36 chr3 8344044 8344492 -209692666 + L1ME2 LINE L1 5685 6145 -19 438 108 0 0 chr3 8344750 8344815 -209692343 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 2350 105 0 0 chr3 8344978 8345283 -209691875 - AluSc SINE Alu -4 305 1 180 0 0 0 chr3 8346010 8346030 -209691128 + (A)n Simple_repeat Simple_repeat 1 20 0 2277 90 3 3 chr3 8346121 8346421 -209690737 - AluSx SINE Alu -2 310 11 22 35 0 0 chr3 8346689 8346718 -209690440 + AT_rich Low_complexity Low_complexity 1 29 0 1593 213 101 0 chr3 8346845 8347211 -209689947 + MLT1A2-int LTR MaLR 1333 1735 0 233 212 197 0 chr3 8347211 8347277 -209689881 + MLT1A2 LTR MaLR 1 79 -295 340 309 0 0 chr3 8347317 8347414 -209689744 + MLT1A2 LTR MaLR 60 156 -218 756 184 21 154 chr3 8347445 8347679 -209689479 + MLT1A2 LTR MaLR 173 374 0 407 335 6 29 chr3 8347723 8347893 -209689265 - MER5A DNA MER1_type -23 166 1 442 327 17 14 chr3 8347944 8348130 -209689028 + MIR SINE MIR 25 209 -53 293 331 182 7 chr3 8348302 8348456 -209688702 - MIR SINE MIR -15 247 67 528 284 91 33 chr3 8349562 8349805 -209687353 - MIR SINE MIR -4 258 2 210 274 19 57 chr3 8350500 8350606 -209686552 - MIR SINE MIR -54 208 107 216 224 17 17 chr3 8351132 8351190 -209685968 + CT-rich Low_complexity Low_complexity 2 59 0 1654 142 54 85 chr3 8351455 8351842 -209685316 - THE1C LTR MaLR 0 375 1 1926 175 0 0 chr3 8352238 8352546 -209684612 - AluSx SINE Alu -4 308 1 2201 105 0 32 chr3 8352966 8353281 -209683877 + AluSg1 SINE Alu 1 305 -4 1488 214 61 12 chr3 8354325 8354667 -209682491 + MLT1A1 LTR MaLR 1 359 -6 737 273 16 0 chr3 8355228 8355411 -209681747 + MER58A DNA MER1_type 1 186 -38 793 201 17 6 chr3 8355426 8355605 -209681553 - L1MD1 LINE L1 -8 6234 6054 2851 188 35 25 chr3 8355616 8355708 -209681450 - L1MD1 LINE L1 -252 5990 5900 2406 123 17 3 chr3 8355708 8356067 -209681091 + THE1B LTR MaLR 1 364 0 2851 188 35 25 chr3 8356067 8356640 -209680518 - L1MD1 LINE L1 -342 5900 5319 1906 178 73 8 chr3 8356839 8357209 -209679949 + MSTD LTR MaLR 1 394 -2 5502 263 68 38 chr3 8357213 8358896 -209678262 + MSTD-int LTR MaLR 2 1735 0 1868 176 92 0 chr3 8358896 8359255 -209677903 + MSTD LTR MaLR 1 392 -4 22 56 0 0 chr3 8359598 8359634 -209677524 + AT_rich Low_complexity Low_complexity 1 36 0 464 281 103 50 chr3 8360332 8360574 -209676584 + MIR SINE MIR 5 259 -3 370 152 38 13 chr3 8360758 8360837 -209676321 + LTR56 LTR ERV1 349 429 -16 264 154 0 0 chr3 8361679 8361731 -209675427 + (TG)n Simple_repeat Simple_repeat 1 52 0 321 360 71 22 chr3 8361758 8361983 -209675175 - L3 LINE CR1 -159 1418 1183 422 314 41 41 chr3 8362139 8362359 -209674799 - MIR SINE MIR -37 225 6 327 49 0 0 chr3 8362800 8362841 -209674317 + (CA)n Simple_repeat Simple_repeat 2 42 0 185 0 40 0 chr3 8362909 8362934 -209674224 + (TTA)n Simple_repeat Simple_repeat 2 27 0 684 198 152 5 chr3 8362934 8363131 -209674027 - MER5C DNA MER1_type -47 277 52 1723 186 3 0 chr3 8363437 8363733 -209673425 - AluJo SINE Alu -11 301 5 301 268 86 86 chr3 8364182 8364391 -209672767 - L1ME3A LINE L1 -283 5887 5679 355 294 73 23 chr3 8364448 8364737 -209672421 - L1ME3A LINE L1 -584 5582 5271 334 284 35 103 chr3 8366266 8366498 -209670660 - L3 LINE CR1 -518 1059 844 192 363 55 11 chr3 8366661 8366752 -209670406 - L3 LINE CR1 -11 1566 1472 201 264 114 36 chr3 8366838 8366978 -209670180 + MIR SINE MIR 46 196 -66 2002 108 0 81 chr3 8367208 8367542 -209669616 + AluSx SINE Alu 1 307 -5 395 250 167 14 chr3 8368057 8368201 -209668957 + MER5A DNA MER1_type 4 169 -20 198 375 0 0 chr3 8368227 8368299 -209668859 - MER5B DNA MER1_type -60 118 47 294 388 50 0 chr3 8369153 8369313 -209667845 - MIR3 SINE MIR -1 207 40 211 356 46 11 chr3 8369320 8369407 -209667751 + L2 LINE L2 2443 2532 -782 336 235 118 78 chr3 8369439 8369643 -209667515 + L2 LINE L2 2833 3044 -228 440 200 12 0 chr3 8369783 8369868 -209667290 + MER94 DNA DNA 1 86 -48 860 144 51 20 chr3 8370099 8370294 -209666864 + L1MA5 LINE L1 6100 6300 0 48 18 0 0 chr3 8370297 8370352 -209666806 + AT_rich Low_complexity Low_complexity 1 55 0 301 230 23 46 chr3 8371048 8371135 -209666023 + MER112 DNA MER1_type 1 85 -175 189 250 0 0 chr3 8371137 8371197 -209665961 + (CATA)n Simple_repeat Simple_repeat 1 60 0 182 355 47 12 chr3 8371390 8371562 -209665596 - L2 LINE L2 -1108 2206 2029 225 287 126 35 chr3 8371633 8371720 -209665438 + L2 LINE L2 3193 3287 -26 2061 223 123 55 chr3 8371915 8372658 -209664500 + LTR50 LTR ERVL 1 793 -2 4590 86 12 80 chr3 8372831 8373481 -209663677 + L1PB1 LINE L1 5193 5776 -375 189 0 0 0 chr3 8373481 8373502 -209663656 + (CA)n Simple_repeat Simple_repeat 1 21 0 4590 86 12 80 chr3 8373502 8373700 -209663458 + L1PB1 LINE L1 5776 5986 -165 825 293 26 7 chr3 8373708 8374015 -209663143 + L1M4 LINE L1 2272 2584 -3562 5312 142 17 5 chr3 8374068 8375062 -209662096 + L1PA16 LINE L1 5128 6133 -33 3261 138 24 29 chr3 8375202 8375791 -209661367 - LTR60 LTR ERV1 0 586 1 273 184 126 0 chr3 8375853 8375956 -209661202 + HAL1b LINE L1 746 861 -487 2699 16 3 3 chr3 8376185 8376490 -209660668 + AluY SINE Alu 1 305 -6 490 253 123 0 chr3 8376596 8376750 -209660408 + MLT1F1 LTR MaLR 9 181 -386 1181 153 18 35 chr3 8376795 8376808 -209660350 - Tigger1 DNA MER2_type -1 2417 2405 3070 103 41 0 chr3 8376808 8377243 -209659915 + MLT2A2 LTR ERVL 1 453 0 1181 153 18 35 chr3 8377243 8377457 -209659701 - Tigger1 DNA MER2_type -13 2405 2194 320 296 0 0 chr3 8377497 8377595 -209659563 + L1M4 LINE L1 2592 2689 -3457 560 258 85 25 chr3 8377610 8378045 -209659113 - L1MEc LINE L1 -3923 2473 2013 461 233 85 51 chr3 8378197 8378373 -209658785 - MLT1K LTR MaLR -34 554 373 24 0 0 0 chr3 8378395 8378419 -209658739 + AT_rich Low_complexity Low_complexity 1 24 0 2096 203 21 77 chr3 8378423 8378994 -209658164 - LTR8 LTR ERV1 0 691 153 5167 132 24 5 chr3 8379016 8380206 -209656952 - L1PA16 LINE L1 -11 6155 4981 1786 112 73 0 chr3 8380207 8380493 -209656665 - LTR49 LTR ERV1 -288 307 1 391 250 85 51 chr3 8380775 8380951 -209656207 + MLT1K LTR MaLR 373 554 -34 351 243 29 10 chr3 8382803 8382906 -209654252 + MER103 DNA DNA 55 159 -7 290 316 51 0 chr3 8383601 8383680 -209653478 + MIR SINE MIR 44 126 -82 350 231 51 0 chr3 8383931 8384009 -209653149 - MIR SINE MIR -16 246 165 209 278 122 11 chr3 8384555 8384645 -209652513 - L2 LINE L2 -35 3237 3138 12783 151 35 14 chr3 8384783 8386985 -209650173 + Tigger4(Zombi) DNA MER2_type 1 2248 -483 43730 35 9 3 chr3 8386985 8393100 -209644058 - L1PA3 LINE L1 -5 6150 7 2690 115 33 102 chr3 8393100 8393647 -209643511 + Tigger4(Zombi) DNA MER2_type 2222 2730 -1 326 348 11 50 chr3 8393740 8393936 -209643222 + MIR SINE MIR 1 191 -17 204 125 0 0 chr3 8394693 8394725 -209642433 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1893 217 24 78 chr3 8395045 8395580 -209641578 - MLT2B3 LTR ERVL -48 506 1 1274 158 74 74 chr3 8395790 8396088 -209641070 + AluJb SINE Alu 1 298 -14 2448 86 0 0 chr3 8396180 8396482 -209640676 + AluY SINE Alu 1 302 -9 582 194 37 0 chr3 8396999 8397107 -209640051 - MLT2B3 LTR ERVL -72 482 371 358 82 0 0 chr3 8397179 8397228 -209639930 - MLT2B1 LTR ERVL 0 520 472 208 266 16 16 chr3 8397238 8397302 -209639856 + L2 LINE L2 3246 3309 -4 250 309 53 63 chr3 8397982 8398189 -209638969 - L2 LINE L2 0 3313 3109 357 331 105 6 chr3 8398222 8398403 -209638755 - L2 LINE L2 -358 2956 2758 2528 292 105 117 chr3 8398413 8399519 -209637639 - L2 LINE L2 -840 2474 1356 780 223 50 59 chr3 8399519 8399739 -209637419 - MER58A DNA MER1_type -1 223 6 2528 292 105 117 chr3 8399739 8399777 -209637381 - L2 LINE L2 -1958 1356 1319 1595 213 45 8 chr3 8399777 8400129 -209637029 + MLT1A1 LTR MaLR 1 365 0 2528 292 105 117 chr3 8400129 8401241 -209635917 - L2 LINE L2 -1995 1319 28 325 286 0 0 chr3 8401875 8401959 -209635199 + MER94 DNA DNA 5 88 -46 1321 343 40 17 chr3 8403019 8403593 -209633565 + L1PA16 LINE L1 788 1374 -6200 313 246 127 18 chr3 8403649 8403759 -209633399 + L1PA16 LINE L1 2176 2297 -5277 282 346 0 0 chr3 8403738 8403816 -209633342 + L1PA16 LINE L1 2104 2181 -5400 * 13008 231 29 16 chr3 8404475 8409816 -209627342 + L1PA16 LINE L1 2225 7602 -2 713 296 83 53 chr3 8409913 8410288 -209626870 + MLT1I LTR MaLR 4 389 -20 542 168 16 16 chr3 8410370 8410495 -209626663 + L1MA10 LINE L1 6209 6333 -1 279 0 0 0 chr3 8410859 8410890 -209626268 + (CA)n Simple_repeat Simple_repeat 2 32 0 2008 173 11 6 chr3 8410947 8411300 -209625858 - THE1A LTR MaLR 0 355 1 11203 103 17 2 chr3 8411300 8412856 -209624302 - THE1A-int LTR MaLR 0 1580 2 2202 138 23 6 chr3 8412857 8413206 -209623952 - THE1A LTR MaLR 0 355 1 261 370 55 0 chr3 8413506 8413652 -209623506 - MIR3 SINE MIR -1 207 54 264 215 15 31 chr3 8414819 8414884 -209622274 - L1PB4 LINE L1 -90 6066 6003 27 49 0 0 chr3 8414903 8414944 -209622214 + AT_rich Low_complexity Low_complexity 1 41 0 2466 62 0 10 chr3 8415312 8415621 -209621537 + AluY SINE Alu 1 306 -5 395 252 72 29 chr3 8416301 8416440 -209620718 - L1PB4 LINE L1 0 6156 6012 883 135 10 91 chr3 8417023 8417231 -209619927 - L1MA10 LINE L1 -2 6332 6142 3998 189 52 26 chr3 8417238 8418903 -209618255 - L1MB1 LINE L1 -135 6033 4316 221 130 43 58 chr3 8419548 8419617 -209617541 + (TATAG)n Simple_repeat Simple_repeat 3 70 0 28 29 0 0 chr3 8420840 8420875 -209616283 + AT_rich Low_complexity Low_complexity 1 35 0 196 29 29 29 chr3 8421768 8421802 -209615356 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 186 43 0 0 chr3 8422350 8422373 -209614785 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr3 8422408 8422429 -209614729 + AT_rich Low_complexity Low_complexity 1 21 0 24 85 0 0 chr3 8422530 8422589 -209614569 + AT_rich Low_complexity Low_complexity 1 59 0 263 125 42 52 chr3 8422631 8422727 -209614431 + (TTATA)n Simple_repeat Simple_repeat 5 99 0 216 387 42 17 chr3 8422806 8422925 -209614233 + MER5A DNA MER1_type 68 189 0 280 368 114 14 chr3 8422965 8423185 -209613973 + L2 LINE L2 2805 3046 -226 353 326 19 49 chr3 8423204 8423441 -209613717 - MIR SINE MIR 0 262 35 11474 203 55 25 chr3 8423462 8427002 -209610156 + L1PA16 LINE L1 806 4240 -2629 6975 61 26 1 chr3 8427002 8427877 -209609281 - MER11D LTR ERVK 0 897 1 11474 203 55 25 chr3 8427877 8428396 -209608762 + L1PA16 LINE L1 4240 4742 -2127 234 0 0 0 chr3 8428396 8428422 -209608736 + (CA)n Simple_repeat Simple_repeat 1 26 0 11474 203 55 25 chr3 8428422 8430170 -209606988 + L1PA16 LINE L1 4742 6860 -9 21 0 0 0 chr3 8430174 8430195 -209606963 + AT_rich Low_complexity Low_complexity 1 21 0 371 322 11 72 chr3 8431695 8431875 -209605283 + MIR SINE MIR 23 191 -71 254 203 0 38 chr3 8431978 8432057 -209605101 + (CATATA)n Simple_repeat Simple_repeat 2 77 0 1524 237 68 45 chr3 8432213 8432982 -209604176 + Charlie7 DNA MER1_type 1723 2508 -104 1751 211 35 28 chr3 8433226 8433685 -209603473 - MLT1C LTR MaLR 0 467 6 506 241 165 24 chr3 8435874 8436086 -209601072 + MIR SINE MIR 21 262 0 1926 128 10 7 chr3 8436199 8436495 -209600663 - AluSp SINE Alu -16 297 1 21 0 0 0 chr3 8436601 8436622 -209600536 + AT_rich Low_complexity Low_complexity 1 21 0 204 243 0 0 chr3 8436679 8436753 -209600405 + (TATATG)n Simple_repeat Simple_repeat 4 77 0 477 328 102 11 chr3 8437566 8437743 -209599415 + MIR SINE MIR 6 198 -64 4207 45 0 0 chr3 8437860 8438390 -209598768 - L1P LINE L1 -2438 3708 3179 2908 23 0 0 chr3 8438383 8438727 -209598431 + L1P LINE L1 3708 4051 -2095 * 226 65 0 0 chr3 8438721 8438752 -209598406 - L1P LINE L1 -2937 3209 3179 * 1256 21 0 0 chr3 8438749 8438894 -209598264 + L1PA3 LINE L1 3712 3856 -2290 11275 24 6 0 chr3 8438894 8440981 -209596177 + L1PA3 LINE L1 4061 6152 -3 21 0 0 0 chr3 8440981 8441002 -209596156 + AT_rich Low_complexity Low_complexity 1 21 0 290 327 63 25 chr3 8441432 8441591 -209595567 + MIR3 SINE MIR 35 199 -9 2040 118 6 43 chr3 8441701 8442023 -209595135 + AluSg SINE Alu 1 310 0 1936 194 24 5 chr3 8442047 8442424 -209594734 - MER44D DNA MER2_type -166 439 1 342 288 149 40 chr3 8443197 8443419 -209593739 - MIR SINE MIR -13 249 4 2359 64 0 10 chr3 8443606 8443901 -209593257 + AluY SINE Alu 1 292 -19 32 43 0 0 chr3 8444802 8444848 -209592310 + AT_rich Low_complexity Low_complexity 1 46 0 369 342 103 40 chr3 8445512 8445784 -209591374 - L3 LINE CR1 -17 1560 1272 189 308 202 30 chr3 8446294 8446492 -209590666 - L3 LINE CR1 -910 667 436 791 299 33 11 chr3 8446912 8447297 -209589861 + LTR16A LTR ERVL 16 450 0 574 105 0 12 chr3 8447926 8448012 -209589146 - AluSg/x SINE Alu -13 296 212 212 322 98 49 chr3 8448193 8448336 -209588822 + MIR SINE MIR 34 183 -79 29 0 0 0 chr3 8448427 8448456 -209588702 + AT_rich Low_complexity Low_complexity 1 29 0 31 76 0 0 chr3 8449598 8449664 -209587494 + AT_rich Low_complexity Low_complexity 1 66 0 241 111 86 19 chr3 8449676 8449838 -209587320 + (TA)n Simple_repeat Simple_repeat 1 173 0 25 31 0 0 chr3 8449838 8449870 -209587288 + AT_rich Low_complexity Low_complexity 1 32 0 21 71 0 0 chr3 8449960 8450002 -209587156 + AT_rich Low_complexity Low_complexity 1 42 0 2448 122 28 0 chr3 8450538 8450891 -209586267 + THE1B LTR MaLR 1 363 -1 11406 100 4 5 chr3 8450892 8451383 -209585775 + THE1B-int LTR MaLR 1 491 -1089 2201 100 0 28 chr3 8451383 8451703 -209585455 + AluSx SINE Alu 1 311 -1 11406 100 4 5 chr3 8451703 8452792 -209584366 + THE1B-int LTR MaLR 491 1580 0 2160 149 36 14 chr3 8452792 8453148 -209584010 + THE1B LTR MaLR 1 364 0 27 49 0 0 chr3 8453332 8453373 -209583785 + AT_rich Low_complexity Low_complexity 1 41 0 208 139 0 0 chr3 8453896 8453932 -209583226 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 315 411 60 31 chr3 8453996 8454553 -209582605 - L2 LINE L2 -1 3271 2703 677 223 71 62 chr3 8454741 8454952 -209582206 - MER20 DNA MER1_type -5 214 2 471 254 30 45 chr3 8455307 8455441 -209581717 - L2 LINE L2 0 3313 3182 267 403 56 7 chr3 8455436 8455580 -209581578 - MER5A DNA MER1_type -38 151 1 * 299 243 19 0 chr3 8455665 8455753 -209581405 + (TA)n Simple_repeat Simple_repeat 2 94 -12 270 81 0 0 chr3 8455753 8455790 -209581368 + (CA)n Simple_repeat Simple_repeat 2 38 0 299 243 19 0 chr3 8455790 8455804 -209581354 + (TA)n Simple_repeat Simple_repeat 94 106 0 254 289 242 7 chr3 8456321 8456470 -209580688 - MER5A DNA MER1_type 0 189 6 413 231 172 11 chr3 8456614 8456800 -209580358 - L1MC/D LINE L1 -2336 5472 5257 489 264 83 7 chr3 8457070 8457346 -209579812 - MER113 DNA MER1_type? -213 308 12 279 299 0 11 chr3 8457534 8457621 -209579537 + GA-rich Low_complexity Low_complexity 2 87 0 2161 91 31 0 chr3 8457780 8458066 -209579092 - AluSg SINE Alu -15 295 1 468 276 61 33 chr3 8458101 8458282 -209578876 - MIR SINE MIR -61 201 16 21 57 0 0 chr3 8458924 8458959 -209578199 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr3 8459141 8459161 -209577997 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 807 204 65 27 chr3 8459177 8459363 -209577795 - AluJo SINE Alu -78 234 42 276 236 16 49 chr3 8459578 8459701 -209577457 + (TATATG)n Simple_repeat Simple_repeat 2 120 0 223 241 7 51 chr3 8459648 8459785 -209577373 + (TTTA)n Simple_repeat Simple_repeat 4 134 0 * 265 321 71 36 chr3 8459785 8459897 -209577261 - MIR SINE MIR -116 146 31 308 333 84 33 chr3 8460181 8460394 -209576764 - MIR SINE MIR -31 231 8 2373 35 42 0 chr3 8460508 8460795 -209576363 + AluY SINE Alu 1 299 -12 43808 43 7 0 chr3 8460887 8467003 -209570155 + L1PA3 LINE L1 1 6152 -3 246 174 0 0 chr3 8467953 8467999 -209569159 + (TATG)n Simple_repeat Simple_repeat 2 47 0 198 0 0 0 chr3 8468066 8468088 -209569070 + (TG)n Simple_repeat Simple_repeat 2 23 0 * 345 47 0 0 chr3 8468087 8468130 -209569028 + (TA)n Simple_repeat Simple_repeat 1 43 0 2387 207 31 66 chr3 8468295 8468869 -209568289 - MLT2B3 LTR ERVL 0 554 1 765 249 42 73 chr3 8469659 8469920 -209567238 - MIR SINE MIR -4 258 6 24 77 0 0 chr3 8470998 8471050 -209566108 + AT_rich Low_complexity Low_complexity 1 52 0 193 322 119 25 chr3 8471244 8471362 -209565796 + L2 LINE L2 3180 3308 -5 466 72 14 0 chr3 8471370 8471439 -209565719 + L1MB1 LINE L1 6098 6167 -1 683 317 20 37 chr3 8472275 8472521 -209564637 + MIR SINE MIR 16 257 -5 222 37 0 0 chr3 8472921 8472948 -209564210 + (CATTT)n Simple_repeat Simple_repeat 4 30 0 2150 116 0 0 chr3 8472948 8473232 -209563926 - AluSx SINE Alu -28 284 1 22 0 0 0 chr3 8473234 8473256 -209563902 + AT_rich Low_complexity Low_complexity 1 22 0 285 274 144 14 chr3 8474032 8474178 -209562980 - MIR SINE MIR 0 262 98 1107 268 155 9 chr3 8474549 8475004 -209562154 - MLT1F1 LTR MaLR -40 527 1 2394 157 36 19 chr3 8475763 8476184 -209560974 - MSTC LTR MaLR 0 428 1 288 0 0 0 chr3 8476757 8476789 -209560369 + (T)n Simple_repeat Simple_repeat 1 32 0 524 289 88 21 chr3 8477492 8477731 -209559427 - MLT1L LTR MaLR -211 404 150 1824 156 3 0 chr3 8477937 8478220 -209558938 + AluSg SINE Alu 27 310 0 209 235 0 12 chr3 8478710 8478791 -209558367 + CT-rich Low_complexity Low_complexity 3 82 0 259 292 39 15 chr3 8478868 8478998 -209558160 + LTR67 LTR ERVL 411 543 -14 1731 134 4 19 chr3 8479436 8479704 -209557454 + AluY SINE Alu 43 306 -5 193 239 0 22 chr3 8480866 8480912 -209556246 + L2 LINE L2 3267 3311 -2 4948 191 19 14 chr3 8481074 8481371 -209555787 + L1PA16 LINE L1 4125 4419 -1747 2238 116 3 0 chr3 8481371 8481682 -209555476 - AluSx SINE Alu 0 312 1 4948 191 19 14 chr3 8481682 8482864 -209554294 + L1PA16 LINE L1 4419 5607 -559 1522 103 4 0 chr3 8482863 8483096 -209554062 - L1PA8 LINE L1 -1642 4504 4271 * 6395 101 1 1 chr3 8483096 8483749 -209553409 + L1PA8 LINE L1 4522 5174 -998 337 48 0 48 chr3 8483749 8483811 -209553347 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 6395 101 1 1 chr3 8483811 8484803 -209552355 + L1PA8 LINE L1 5173 6172 0 2664 154 0 0 chr3 8484805 8485227 -209551931 + L1PA16 LINE L1 5601 6022 -144 972 96 7 0 chr3 8485282 8485417 -209551741 + L1PA16 LINE L1 6022 6157 -9 359 310 37 61 chr3 8486093 8486338 -209550820 - MIR SINE MIR 0 262 24 204 292 0 0 chr3 8486786 8486834 -209550324 + L2 LINE L2 2679 2726 -588 1521 241 34 0 chr3 8486865 8487218 -209549940 + MLT1A1 LTR MaLR 1 365 0 2410 284 159 40 chr3 8487283 8488460 -209548698 - L2 LINE L2 -339 2975 1622 2113 126 0 0 chr3 8488460 8488754 -209548404 + AluSx SINE Alu 1 294 -18 2410 284 159 40 chr3 8488754 8488894 -209548264 - L2 LINE L2 -1692 1622 1500 306 337 11 0 chr3 8488952 8489047 -209548111 + L2 LINE L2 3168 3263 -9 216 0 0 0 chr3 8489758 8489782 -209547376 + (CA)n Simple_repeat Simple_repeat 2 25 0 6476 153 39 18 chr3 8490099 8490364 -209546794 - Tigger3b DNA MER2_type -1797 1231 973 3538 144 0 0 chr3 8490364 8490886 -209546272 + MER1A DNA MER1_type 2 523 -4 6476 153 39 18 chr3 8490886 8491823 -209545335 - Tigger3b DNA MER2_type -2055 973 4 268 284 28 6 chr3 8492262 8492438 -209544720 + (TA)n Simple_repeat Simple_repeat 1 180 0 29 0 0 0 chr3 8492885 8492914 -209544244 + AT_rich Low_complexity Low_complexity 1 29 0 4724 51 0 0 chr3 8493148 8493718 -209543440 + L1PA5 LINE L1 5572 6141 -13 229 208 0 21 chr3 8494748 8494796 -209542362 + (CA)n Simple_repeat Simple_repeat 2 48 0 312 264 10 101 chr3 8494895 8495103 -209542055 + MIR SINE MIR 61 249 -13 501 263 157 80 chr3 8495599 8496013 -209541145 - MLT1H LTR MaLR 0 549 104 2029 155 0 0 chr3 8497084 8497388 -209539770 + AluSx SINE Alu 1 304 -8 639 240 84 0 chr3 8497393 8497547 -209539611 - MER96 DNA MER1_type? -7 168 2 565 269 92 50 chr3 8497793 8498031 -209539127 + MIR SINE MIR 15 262 0 527 165 12 0 chr3 8498132 8498217 -209538941 + HUERS-P3 LTR ERV1 8830 8915 -4 2591 197 55 8 chr3 8498225 8498754 -209538404 + LTR9B LTR ERV1 7 560 -84 207 0 0 0 chr3 8498754 8498777 -209538381 + (A)n Simple_repeat Simple_repeat 1 23 0 23 78 0 0 chr3 8498976 8499027 -209538131 + AT_rich Low_complexity Low_complexity 1 51 0 1614 163 0 0 chr3 8499898 8500150 -209537008 - AluJb SINE Alu -60 252 1 283 363 88 18 chr3 8500193 8500419 -209536739 + MIR SINE MIR 4 245 -17 329 271 211 31 chr3 8500598 8500940 -209536218 - L2 LINE L2 -181 3091 2690 1414 191 3 53 chr3 8501869 8502151 -209535007 + Tigger7 DNA MER2_type 1 268 -2219 517 178 0 11 chr3 8502153 8502243 -209534915 + Tigger7 DNA MER2_type 2399 2487 -4 183 371 81 32 chr3 8502314 8502438 -209534720 - L2 LINE L2 -20 3252 3123 291 357 68 61 chr3 8502762 8503336 -209533822 - L2 LINE L2 -339 2975 2398 2112 174 22 25 chr3 8503340 8503788 -209533370 + L1MC2 LINE L1 5890 6336 -8 443 297 30 36 chr3 8503843 8504008 -209533150 - L2 LINE L2 -1286 2028 1865 1880 301 28 0 chr3 8504673 8505349 -209531809 + L1MEc LINE L1 40 771 -5625 316 314 51 0 chr3 8505588 8505706 -209531452 + MER5C DNA MER1_type 1 124 -200 246 150 117 0 chr3 8505828 8505888 -209531270 + MER5C DNA MER1_type 257 323 -1 213 39 0 0 chr3 8506444 8506470 -209530688 + (T)n Simple_repeat Simple_repeat 1 26 0 2171 125 0 0 chr3 8507504 8507807 -209529351 - AluSx SINE Alu -9 303 1 2496 87 0 0 chr3 8508035 8508346 -209528812 - AluY SINE Alu 0 311 1 255 288 89 31 chr3 8509052 8509125 -209528033 - MLT1J1 LTR MaLR -184 262 195 226 0 59 0 chr3 8509125 8509159 -209527999 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 3345 90 25 0 chr3 8509161 8509607 -209527551 - LTR22A LTR ERVK 0 458 2 255 288 89 31 chr3 8509607 8509721 -209527437 - MLT1J1 LTR MaLR -251 195 61 1034 226 5 5 chr3 8512275 8512479 -209524679 - MER20 DNA MER1_type 0 219 16 351 292 60 43 chr3 8513376 8513561 -209523597 + MLT1K LTR MaLR 399 586 -2 261 150 100 25 chr3 8514883 8514963 -209522195 - L1M4 LINE L1 -1436 4710 4625 433 301 20 7 chr3 8515239 8515392 -209521766 - HERVL LTR ERVL -4025 1629 1475 388 317 40 71 chr3 8515773 8516098 -209521060 - HERVL LTR ERVL -4618 1036 722 1332 298 90 7 chr3 8516660 8517103 -209520055 - MLT2E LTR ERVL -7 621 142 342 349 40 20 chr3 8517259 8517408 -209519750 + MIR SINE MIR 11 162 -100 521 261 25 6 chr3 8517409 8517570 -209519588 + L1MCa LINE L1 156 319 -6245 3247 53 24 40 chr3 8517653 8518108 -209519050 + LTR7 LTR ERV1 1 448 -2 20674 82 9 27 chr3 8518110 8521150 -209516008 + HERVH LTR ERV1 1 2987 -4726 911 135 20 0 chr3 8521144 8521292 -209515866 + HERVH LTR ERV1 3140 3290 -4423 * 3135 133 4 6 chr3 8521282 8521785 -209515373 + HERVH LTR ERV1 3492 3993 -3720 10578 60 7 3 chr3 8521787 8523143 -209514015 + HERVH LTR ERV1 4488 5848 -1865 289 233 101 39 chr3 8523180 8523309 -209513849 + L1MCa LINE L1 744 880 -5165 1918 105 94 0 chr3 8523320 8523597 -209513561 + AluY SINE Alu 1 303 -8 3624 247 59 51 chr3 8523602 8523811 -209513347 + L1MCa LINE L1 969 1175 -5389 2471 76 0 13 chr3 8523811 8524126 -209513032 + AluY SINE Alu 1 311 0 3624 247 59 51 chr3 8524126 8527025 -209510133 + L1MCa LINE L1 1175 4289 -2275 257 231 0 0 chr3 8527028 8527080 -209510078 + LTR30 LTR ERV1 1 52 -670 1162 165 134 27 chr3 8527080 8527341 -209509817 + pTR5 LTR ERV1 1395 1683 -755 1332 191 52 30 chr3 8527353 8527682 -209509476 + L1MC2 LINE L1 5999 6334 -10 186 103 0 0 chr3 8527810 8527839 -209509319 + (TTA)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr3 8528743 8528773 -209508385 + AT_rich Low_complexity Low_complexity 1 30 0 334 63 0 127 chr3 8529646 8529709 -209507449 - MLT2D LTR ERVL -11 403 349 7734 61 4 0 chr3 8529830 8530839 -209506319 + L1P LINE L1 4391 5403 -743 1860 166 63 23 chr3 8530850 8531200 -209505958 - MLT2D LTR ERVL -50 364 1 209 336 25 8 chr3 8531202 8531324 -209505834 + MIR SINE MIR 139 262 0 25 51 0 0 chr3 8532089 8532128 -209505030 + AT_rich Low_complexity Low_complexity 1 39 0 2161 181 60 2 chr3 8532525 8532961 -209504197 + LOR1b LTR ERV1 1 461 0 21 0 0 0 chr3 8533139 8533160 -209503998 + AT_rich Low_complexity Low_complexity 1 21 0 236 239 90 15 chr3 8534000 8534067 -209503091 + MIR SINE MIR 68 139 -123 608 293 54 16 chr3 8534424 8534666 -209502492 - MIR SINE MIR -6 256 6 602 249 106 67 chr3 8534740 8535208 -209501950 + MLT1H LTR MaLR 29 549 0 346 198 86 43 chr3 8535230 8535346 -209501812 - L1ME4a LINE L1 -1 6120 6000 234 244 0 0 chr3 8535373 8535418 -209501740 - MIR SINE MIR -23 239 195 454 329 87 0 chr3 8535658 8535819 -209501339 - MIR SINE MIR -87 175 1 639 213 0 8 chr3 8536090 8536212 -209500946 + FLAM_A SINE Alu 5 125 -8 321 208 83 104 chr3 8537468 8537531 -209499627 + MER5B DNA MER1_type 1 64 -114 2301 119 0 0 chr3 8537531 8537843 -209499315 + AluSx SINE Alu 1 312 0 321 208 83 104 chr3 8537843 8537923 -209499235 + MER5B DNA MER1_type 64 141 -37 490 296 88 39 chr3 8538111 8538371 -209498787 + MLT1L LTR MaLR 123 395 -220 308 273 76 8 chr3 8538417 8538549 -209498609 + MLT1L LTR MaLR 466 606 -9 22 0 0 0 chr3 8539025 8539047 -209498111 + AT_rich Low_complexity Low_complexity 1 22 0 434 235 0 12 chr3 8539178 8539263 -209497895 + L2 LINE L2 3230 3313 0 186 268 155 0 chr3 8539640 8539711 -209497447 - L2 LINE L2 -10 3303 3222 625 309 18 0 chr3 8540197 8540365 -209496793 - MER5B DNA MER1_type 0 178 8 27 0 0 0 chr3 8540725 8540752 -209496406 + AT_rich Low_complexity Low_complexity 1 27 0 305 194 60 0 chr3 8541457 8541524 -209495634 - MER58 DNA MER1_type -13 2407 2337 632 259 115 8 chr3 8542404 8542647 -209494511 + MER5C DNA MER1_type 1 269 -55 3371 111 31 0 chr3 8542811 8543287 -209493871 + PABL_A LTR ERV1 1 491 -169 2087 112 36 91 chr3 8543287 8543491 -209493667 - THE1B LTR MaLR -1 363 188 2197 131 0 0 chr3 8543491 8543803 -209493355 - AluSx SINE Alu 0 312 1 2087 112 36 91 chr3 8543803 8543982 -209493176 - THE1B LTR MaLR -176 188 1 11336 101 12 3 chr3 8543982 8545548 -209491610 - THE1B-int LTR MaLR 0 1580 1 2239 138 8 24 chr3 8545548 8545918 -209491240 - THE1B LTR MaLR 0 364 1 1222 87 29 6 chr3 8545918 8546090 -209491068 + PABL_A LTR ERV1 485 660 0 274 241 72 0 chr3 8546129 8546212 -209490946 - MIR SINE MIR -70 192 104 487 236 26 47 chr3 8546212 8546349 -209490809 - LTR37B LTR ERV1 0 468 335 4072 122 19 2 chr3 8546349 8546973 -209490185 - MER41B LTR ERV1 0 635 1 487 236 26 47 chr3 8546973 8547026 -209490132 - LTR37B LTR ERV1 -133 335 282 796 164 111 58 chr3 8547058 8547247 -209489911 + MER93b LTR ERV1 27 225 -148 1807 194 83 35 chr3 8547445 8548072 -209489086 + MER39 LTR ERV1 8 707 0 637 219 60 23 chr3 8548081 8548298 -209488860 - MER39 LTR ERV1 -436 271 6 347 56 42 14 chr3 8548504 8548576 -209488582 + (TTTA)n Simple_repeat Simple_repeat 2 75 0 7568 30 0 0 chr3 8548576 8549472 -209487686 - L1PA3 LINE L1 -6 6149 5254 514 264 21 0 chr3 8549481 8549621 -209487537 + MIR SINE MIR 86 228 -34 468 220 83 15 chr3 8551866 8551998 -209485160 - MER104 DNA Tc2 -18 162 22 38 0 0 0 chr3 8552147 8552185 -209484973 + AT_rich Low_complexity Low_complexity 1 38 0 277 357 41 12 chr3 8552379 8552550 -209484608 + MLT1K LTR MaLR 144 319 -269 561 113 0 0 chr3 8552634 8552714 -209484444 + AluS SINE Alu 1 80 -233 2027 128 38 0 chr3 8552716 8553005 -209484153 + AluSq SINE Alu 14 313 0 309 262 99 29 chr3 8553006 8553178 -209483980 + MLT1K LTR MaLR 405 588 0 202 326 78 54 chr3 8553263 8553392 -209483766 + L2 LINE L2 3182 3313 0 186 333 0 48 chr3 8553580 8553643 -209483515 + L2 LINE L2 3200 3259 -13 1630 113 254 29 chr3 8554322 8554668 -209482490 - MSTA LTR MaLR -2 426 3 306 344 76 18 chr3 8555422 8555646 -209481512 - MIR SINE MIR -14 248 12 340 318 40 27 chr3 8556422 8556570 -209480588 - MIR SINE MIR -12 250 101 195 431 29 0 chr3 8556694 8556796 -209480362 - MIR SINE MIR -97 165 61 455 0 18 0 chr3 8558123 8558178 -209478980 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 248 330 40 10 chr3 8558189 8558289 -209478869 + L2 LINE L2 3210 3312 -1 527 260 130 6 chr3 8558567 8558736 -209478422 - L3 LINE CR1 -76 1501 1312 1986 224 41 64 chr3 8560284 8560850 -209476308 + MLT2B3 LTR ERVL 2 554 0 230 224 15 15 chr3 8561901 8561968 -209475190 + (TA)n Simple_repeat Simple_repeat 1 67 0 717 252 13 8 chr3 8561968 8562129 -209475029 - MIR SINE MIR -67 141 23 1361 222 11 40 chr3 8562129 8562480 -209474678 - MER58B DNA MER1_type 0 341 1 717 252 13 8 chr3 8562480 8562498 -209474660 - MIR SINE MIR -185 23 7 328 246 339 0 chr3 8562509 8562639 -209474519 + MER5A DNA MER1_type 16 189 0 413 201 132 35 chr3 8562832 8562976 -209474182 - MER103 DNA DNA -7 159 2 334 246 0 154 chr3 8563226 8563401 -209473757 + MIR SINE MIR 96 243 -19 894 224 16 0 chr3 8563488 8563680 -209473478 + MER3 DNA MER1_type 15 209 0 206 391 126 11 chr3 8564549 8564899 -209472259 + L2 LINE L2 2369 2758 -556 2271 206 57 7 chr3 8565333 8565769 -209471389 - LTR32 LTR ERVL 0 471 14 284 310 65 60 chr3 8565769 8565953 -209471205 + L2 LINE L2 3087 3271 -1 182 156 0 0 chr3 8566936 8566968 -209470190 - L2 LINE L2 -1 3271 3240 361 309 55 36 chr3 8567077 8567297 -209469861 - MLT1K LTR MaLR -2 586 363 1957 221 54 74 chr3 8567415 8568194 -209468964 - LTR28 LTR ERV1 0 1020 109 397 241 207 13 chr3 8568195 8568356 -209468802 - LTR28 LTR ERV1 -286 178 1 1285 190 146 24 chr3 8569090 8569516 -209467642 - LTR54B LTR ERV1 -2 496 19 191 263 25 38 chr3 8569672 8569752 -209467406 + L2 LINE L2 3150 3228 -44 1993 139 11 0 chr3 8569813 8570100 -209467058 + AluSq SINE Alu 1 290 -23 1094 194 18 14 chr3 8570101 8570318 -209466840 + MER20 DNA MER1_type 2 219 0 246 333 9 9 chr3 8570332 8570437 -209466721 - MIR SINE MIR -111 151 47 2134 92 26 36 chr3 8572364 8572669 -209464489 - AluSp SINE Alu -11 302 1 2102 190 19 12 chr3 8572918 8573329 -209463829 - MLT2D LTR ERVL 0 414 1 1553 155 107 0 chr3 8574051 8574340 -209462818 - AluSx SINE Alu 0 320 5 195 357 18 65 chr3 8574524 8574692 -209462466 - L2 LINE L2 -225 3047 2888 2206 99 27 0 chr3 8575531 8575823 -209461335 - AluSg1 SINE Alu -9 300 1 1768 190 116 9 chr3 8576164 8576585 -209460573 - MLT1C LTR MaLR -1 466 1 329 373 42 0 chr3 8577488 8577630 -209459528 - MIR3 SINE MIR -25 183 36 572 237 0 0 chr3 8577809 8577923 -209459235 - Charlie1 DNA MER1_type 0 2761 2648 2395 197 52 41 chr3 8577927 8578536 -209458622 - L1MB8 LINE L1 -2 6245 5630 2781 265 27 7 chr3 8578543 8579470 -209457688 - L1MB8 LINE L1 -2516 3699 2751 1805 201 18 0 chr3 8579470 8579808 -209457350 + MER2 DNA MER2_type 1 344 0 2781 265 27 7 chr3 8579808 8579842 -209457316 - L1MB8 LINE L1 -3464 2751 2719 2055 132 0 10 chr3 8579849 8580160 -209456998 - MER50 LTR ERV1 -30 704 397 1565 117 8 25 chr3 8580193 8580433 -209456725 - MER50 LTR ERV1 -498 236 1 1107 259 67 18 chr3 8580433 8581249 -209455909 - L1MB8 LINE L1 -3493 2722 1868 4553 250 63 55 chr3 8581381 8582317 -209454841 - L1M4c LINE L1 -4371 2586 1658 2530 68 0 0 chr3 8582317 8582626 -209454532 - AluY SINE Alu -2 309 1 4553 250 63 55 chr3 8582626 8583877 -209453281 - L1M4c LINE L1 -5299 1658 2 861 201 22 93 chr3 8583878 8584146 -209453012 - Charlie1 DNA MER1_type -2512 249 1 260 51 0 26 chr3 8584423 8584462 -209452696 + (CA)n Simple_repeat Simple_repeat 1 38 0 180 182 0 0 chr3 8586065 8586109 -209451049 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 582 343 60 8 chr3 8586934 8587182 -209449976 - MIR SINE MIR -1 261 1 255 308 0 0 chr3 8587199 8587264 -209449894 + A-rich Low_complexity Low_complexity 4 68 0 315 271 134 53 chr3 8587269 8587516 -209449642 + HAL1 LINE L1 1011 1277 -1230 443 308 8 0 chr3 8587520 8587653 -209449505 + GA-rich Low_complexity Low_complexity 3 136 0 21 36 0 0 chr3 8587680 8587708 -209449450 + AT_rich Low_complexity Low_complexity 1 28 0 520 253 148 13 chr3 8587735 8587964 -209449194 + MIR SINE MIR 1 260 -2 238 330 0 0 chr3 8588864 8588952 -209448206 + (TG)n Simple_repeat Simple_repeat 1 88 0 997 206 123 83 chr3 8589197 8589547 -209447611 + MLT1A1 LTR MaLR 1 364 -1 458 298 115 34 chr3 8590053 8590288 -209446870 - MIR SINE MIR 0 262 9 2264 115 0 0 chr3 8590292 8590597 -209446561 - AluSx SINE Alu -7 305 1 2164 113 7 0 chr3 8590896 8591189 -209445969 - AluSx SINE Alu -13 299 5 2123 110 0 7 chr3 8592352 8592651 -209444507 - AluSx SINE Alu -15 297 1 225 182 0 0 chr3 8593109 8593164 -209443994 + T-rich Low_complexity Low_complexity 1 55 0 512 277 36 0 chr3 8593391 8593528 -209443630 - MER45B DNA AcHobo -786 254 113 410 268 93 22 chr3 8593700 8593883 -209443275 + MER117 DNA MER1_type 2 197 0 26 30 0 0 chr3 8595560 8595593 -209441565 + AT_rich Low_complexity Low_complexity 1 33 0 183 246 49 16 chr3 8595689 8595750 -209441408 + MIR3 SINE MIR 118 180 -28 21 36 0 0 chr3 8596754 8596782 -209440376 + AT_rich Low_complexity Low_complexity 1 28 0 302 345 48 12 chr3 8596963 8597131 -209440027 - HAL1b LINE L1 -438 910 737 2474 52 0 0 chr3 8597779 8598093 -209439065 - AluY SINE Alu 0 314 1 249 323 16 16 chr3 8598112 8598239 -209438919 - HAL1 LINE L1 -837 1670 1544 1712 126 100 0 chr3 8598513 8598782 -209438376 + AluJb SINE Alu 1 296 -16 2096 109 0 0 chr3 8598971 8599246 -209437912 - AluSc SINE Alu -18 291 17 423 274 36 48 chr3 8599503 8599671 -209437487 - L1ME3A LINE L1 -9 6161 5996 860 250 59 10 chr3 8601384 8601788 -209435370 - L1ME LINE L1 -2884 3760 3337 1624 179 188 8 chr3 8602044 8602401 -209434757 + MSTC LTR MaLR 8 428 0 777 271 163 18 chr3 8602405 8602455 -209434703 + MLT1E1 LTR MaLR 89 130 -463 3087 86 32 5 chr3 8602455 8602492 -209434666 - MLT2A1 LTR ERVL 0 444 410 333 0 0 0 chr3 8602492 8602529 -209434629 + (CA)n Simple_repeat Simple_repeat 2 38 0 3087 86 32 5 chr3 8602529 8602923 -209434235 - MLT2A1 LTR ERVL -34 410 1 777 271 163 18 chr3 8602923 8603149 -209434009 + MLT1E1 LTR MaLR 130 405 -188 800 257 6 6 chr3 8603273 8603452 -209433706 + MLT1E1 LTR MaLR 476 654 0 345 280 36 44 chr3 8603470 8603720 -209433438 - L1ME LINE L1 -3744 2900 2653 2355 92 0 3 chr3 8604321 8604627 -209432531 - AluY SINE Alu -6 305 1 242 255 38 84 chr3 8604658 8604921 -209432237 - L1ME LINE L1 -4904 1638 1516 42257 36 22 1 chr3 8604971 8610989 -209426169 - L1PA2 LINE L1 -2 6153 4 385 258 76 59 chr3 8610997 8611339 -209425819 - L1ME LINE L1 -5075 1559 1271 341 324 90 37 chr3 8612207 8612451 -209424707 - HAL1 LINE L1 -1426 1081 825 414 0 0 0 chr3 8613072 8613118 -209424040 + (TG)n Simple_repeat Simple_repeat 2 47 0 216 273 71 40 chr3 8613948 8614047 -209423111 - L2 LINE L2 -4 3309 3208 1949 123 7 3 chr3 8614363 8614686 -209422472 - AluSq SINE Alu 0 324 1 794 292 75 35 chr3 8614784 8615185 -209421973 - MLT2F LTR ERVL -10 653 237 375 285 152 19 chr3 8615199 8615462 -209421696 - MLT2F LTR ERVL -353 310 13 619 341 35 0 chr3 8615610 8615839 -209421319 + MIR SINE MIR 19 255 -7 1880 204 25 46 chr3 8616520 8617000 -209420158 - L1MA9 LINE L1 -35 6277 5808 12212 38 1 1 chr3 8617307 8619548 -209417610 + L1PA4 LINE L1 3907 6153 -2 226 386 48 24 chr3 8619589 8619884 -209417274 + L2 LINE L2 2045 2346 -968 499 295 68 91 chr3 8620173 8620655 -209416503 + L2 LINE L2 1606 2076 -1238 21 0 0 0 chr3 8621858 8621879 -209415279 + AT_rich Low_complexity Low_complexity 1 21 0 908 327 51 57 chr3 8621892 8622458 -209414700 + MLT1K LTR MaLR 10 572 -16 264 77 0 0 chr3 8623270 8623309 -209413849 + (CA)n Simple_repeat Simple_repeat 2 40 0 651 214 0 0 chr3 8623309 8623454 -209413704 + L1MA9 LINE L1 6168 6312 0 2469 69 0 0 chr3 8623718 8624021 -209413137 - AluY SINE Alu -8 303 1 213 324 14 27 chr3 8624288 8624362 -209412796 - L2 LINE L2 -9 3263 3191 4810 106 11 3 chr3 8625241 8625949 -209411209 + L1PA13 LINE L1 5448 6161 -2 230 265 119 92 chr3 8626128 8626247 -209410911 + MIR SINE MIR 48 175 -87 2279 105 3 0 chr3 8626247 8626552 -209410606 + AluY SINE Alu 1 306 -5 230 265 119 92 chr3 8626552 8626617 -209410541 + MIR SINE MIR 175 237 -25 235 289 0 0 chr3 8627219 8627295 -209409863 + L1MC/D LINE L1 5722 5797 -2011 2217 55 10 3 chr3 8627714 8628004 -209409154 - AluY SINE Alu -19 292 1 238 164 0 30 chr3 8628328 8628395 -209408763 + T-rich Low_complexity Low_complexity 4 68 0 1544 158 16 16 chr3 8631479 8631782 -209405376 - L1MA4 LINE L1 -1 6299 5997 291 93 0 0 chr3 8633226 8633269 -209403889 + (CA)n Simple_repeat Simple_repeat 2 44 0 2185 123 10 0 chr3 8633391 8633716 -209403442 - AluSc SINE Alu 0 328 1 1566 173 40 4 chr3 8633728 8634006 -209403152 - AluJb SINE Alu -24 288 1 421 319 122 55 chr3 8634367 8634606 -209402552 - L3 LINE CR1 -751 826 604 1783 207 89 20 chr3 8634606 8635113 -209402045 + MER34 LTR ERV1 1 542 0 421 319 122 55 chr3 8635113 8635261 -209401897 - L3 LINE CR1 -973 604 404 2316 60 3 33 chr3 8635261 8635563 -209401595 - AluY SINE Alu -18 293 1 421 319 122 55 chr3 8635563 8635610 -209401548 - L3 LINE CR1 -1173 404 362 219 297 90 9 chr3 8637479 8637590 -209399568 + MIR SINE MIR 58 177 -85 26 0 0 0 chr3 8638309 8638335 -209398823 + AT_rich Low_complexity Low_complexity 1 26 0 3069 98 20 2 chr3 8638810 8639248 -209397910 + LTR10B LTR ERV1 1 446 -59 1136 205 17 8 chr3 8639252 8639491 -209397667 - MLT1A1 LTR MaLR -124 241 1 5178 237 75 37 chr3 8639497 8641161 -209395997 - MLT1A1-int LTR MaLR -7 1728 2 798 170 24 5 chr3 8641163 8641463 -209395695 - MLT1A1 LTR MaLR 0 365 1 289 298 101 63 chr3 8641554 8641712 -209395446 + MIR SINE MIR 36 199 -63 372 351 93 7 chr3 8641907 8642058 -209395100 + MIR SINE MIR 82 245 -17 218 276 81 41 chr3 8644208 8644331 -209392827 - L2 LINE L2 -1 3312 3185 30 27 0 0 chr3 8644567 8644604 -209392554 + AT_rich Low_complexity Low_complexity 1 37 0 215 366 55 24 chr3 8644628 8644792 -209392366 + L3b LINE CR1 1391 1559 -24 2336 113 0 0 chr3 8646663 8646972 -209390186 + AluSx SINE Alu 1 309 -3 567 228 24 87 chr3 8647428 8647634 -209389524 - MER58C DNA MER1_type -21 194 2 320 250 0 0 chr3 8648247 8648311 -209388847 + MER45 DNA AcHobo 1518 1581 0 657 247 7 0 chr3 8648325 8648475 -209388683 - MER45A DNA AcHobo -6 172 22 27 29 0 0 chr3 8649488 8649522 -209387636 + AT_rich Low_complexity Low_complexity 1 34 0 37 39 0 0 chr3 8650380 8650431 -209386727 + AT_rich Low_complexity Low_complexity 1 51 0 2164 117 23 10 chr3 8650436 8650744 -209386414 + AluSq SINE Alu 1 312 -1 303 322 67 13 chr3 8651356 8651505 -209385653 - L2 LINE L2 -213 3059 2903 1312 177 12 4 chr3 8651577 8651831 -209385327 - MER83 LTR ERV1 0 448 193 228 35 0 0 chr3 8652067 8652096 -209385062 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 299 326 112 66 chr3 8653119 8653361 -209383797 - L2 LINE L2 -16 3256 3004 713 225 0 80 chr3 8654322 8654509 -209382649 + FAM SINE Alu 2 173 -2 279 0 0 0 chr3 8654902 8654933 -209382225 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 7194 77 19 0 chr3 8654944 8656701 -209380457 - L1PA7 LINE L1 -11 6143 4369 28223 108 9 70 chr3 8656701 8661994 -209375164 - L1P LINE L1 -1164 4982 12 1676 197 3 3 chr3 8662331 8662630 -209374528 - AluJb SINE Alu -13 299 1 309 319 174 7 chr3 8662691 8662829 -209374329 - MER5A DNA MER1_type -3 186 26 270 287 101 23 chr3 8663504 8663633 -209373525 - MIR SINE MIR 0 262 124 * 327 347 143 40 chr3 8663613 8664107 -209373051 + L2 LINE L2 2672 3227 -86 2172 114 7 0 chr3 8664674 8664964 -209372194 + AluSc SINE Alu 1 292 -17 288 318 143 14 chr3 8666118 8666390 -209370768 - MLT1L LTR MaLR 0 615 229 782 183 7 0 chr3 8666479 8666616 -209370542 + AluJo SINE Alu 1 138 -174 7792 18 0 0 chr3 8666667 8668030 -209369128 - L1PA2 LINE L1 0 6155 4792 3438 19 0 0 chr3 8668030 8668452 -209368706 + L1PA2 LINE L1 4369 4790 -1356 345 294 228 28 chr3 8668456 8668636 -209368522 - MIR SINE MIR -46 216 1 471 268 78 57 chr3 8669005 8669233 -209367925 - L1MC4 LINE L1 -567 7475 7234 2058 189 119 104 chr3 8669233 8670047 -209367111 + LTR1B LTR ERV1 1 826 0 471 268 78 57 chr3 8670047 8670188 -209366970 - L1MC4 LINE L1 -808 7234 7098 204 113 0 94 chr3 8670305 8670358 -209366800 + (TTTTTG)n Simple_repeat Simple_repeat 2 49 0 574 306 131 33 chr3 8670457 8670947 -209366211 + L1MC4 LINE L1 7498 8035 -7 666 268 6 11 chr3 8671280 8671459 -209365699 - MER58A DNA MER1_type -22 202 25 228 393 13 20 chr3 8671518 8671668 -209365490 + L2 LINE L2 2907 3055 -217 208 205 205 26 chr3 8671856 8671934 -209365224 + L2 LINE L2 3218 3309 -4 2294 135 0 0 chr3 8672191 8672502 -209364656 + AluSx SINE Alu 1 311 -1 22 35 0 0 chr3 8672931 8672960 -209364198 + AT_rich Low_complexity Low_complexity 1 29 0 4174 123 24 5 chr3 8673121 8673753 -209363405 + LTR9B LTR ERV1 1 644 0 30 27 0 0 chr3 8673840 8673877 -209363281 + AT_rich Low_complexity Low_complexity 1 37 0 1768 181 12 71 chr3 8675863 8676272 -209360886 - MLT1B LTR MaLR 0 390 6 414 194 0 0 chr3 8676690 8676757 -209360401 + Tigger2 DNA MER2_type 1 67 -2651 * 2585 169 11 5 chr3 8676743 8677192 -209359966 + Tigger2 DNA MER2_type 2267 2718 0 6540 147 37 36 chr3 8677850 8678447 -209358711 + Tigger3b DNA MER2_type 1 596 -2432 2232 109 0 7 chr3 8678447 8678749 -209358409 + AluSc SINE Alu 1 300 -9 6540 147 37 36 chr3 8678749 8679381 -209357777 + Tigger3b DNA MER2_type 596 1231 0 224 29 0 29 chr3 8679894 8679928 -209357230 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 1299 232 30 55 chr3 8680144 8680185 -209356973 - MLT2C2 LTR ERVL -3 461 420 315 71 0 0 chr3 8680185 8680227 -209356931 + (TG)n Simple_repeat Simple_repeat 2 43 0 1299 232 30 55 chr3 8680227 8680654 -209356504 - MLT2C2 LTR ERVL -44 420 5 2527 99 17 11 chr3 8680974 8681336 -209355822 - THE1B LTR MaLR 0 364 1 2094 122 0 16 chr3 8683930 8684242 -209352916 + AluSx SINE Alu 1 307 -5 396 103 0 0 chr3 8684242 8684300 -209352858 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 2344 64 3 0 chr3 8684930 8685226 -209351932 + AluY SINE Alu 1 297 -14 2085 96 24 3 chr3 8686992 8687284 -209349874 + AluSp SINE Alu 1 298 -15 23 33 0 0 chr3 8688921 8688951 -209348207 + AT_rich Low_complexity Low_complexity 1 30 0 713 293 28 23 chr3 8689282 8689497 -209347661 - MIR SINE MIR -46 216 1 2346 61 14 0 chr3 8690595 8690892 -209346266 - AluY SINE Alu -10 301 1 508 279 14 7 chr3 8690994 8691134 -209346024 - MLT1G1 LTR MaLR -440 155 15 471 344 26 31 chr3 8691179 8691374 -209345784 - MIR SINE MIR -41 221 28 406 312 70 58 chr3 8691413 8691859 -209345299 + HAL1b LINE L1 224 674 -674 27 0 0 0 chr3 8692175 8692202 -209344956 + AT_rich Low_complexity Low_complexity 1 27 0 356 285 98 87 chr3 8692327 8692487 -209344671 - L1M4 LINE L1 -1037 5109 4952 333 0 0 0 chr3 8692487 8692524 -209344634 + (TG)n Simple_repeat Simple_repeat 2 38 0 356 285 98 87 chr3 8692524 8693057 -209344101 - L1M4 LINE L1 -1194 4952 4408 2045 124 3 0 chr3 8693139 8693421 -209343737 - AluSp SINE Alu -30 283 1 21 36 0 0 chr3 8693599 8693627 -209343531 + AT_rich Low_complexity Low_complexity 1 28 0 1037 288 44 75 chr3 8694222 8694812 -209342346 + L1MC2 LINE L1 13 584 -5461 1788 161 3 17 chr3 8695417 8695716 -209341442 - AluJo SINE Alu -17 295 1 290 194 16 0 chr3 8695732 8695794 -209341364 + L1MC2 LINE L1 762 824 -5742 4416 228 90 52 chr3 8695822 8696168 -209340990 + L1M3e LINE L1 781 1112 -5451 2023 161 0 0 chr3 8696168 8696478 -209340680 + AluSx SINE Alu 1 310 -2 4416 228 90 52 chr3 8696478 8697763 -209339395 + L1M3e LINE L1 1112 2449 -4114 2599 188 27 21 chr3 8697763 8698236 -209338922 + MLT2B2 LTR ERVL 1 479 -36 261 98 0 0 chr3 8698236 8698277 -209338881 + (TG)n Simple_repeat Simple_repeat 2 42 0 2599 188 27 21 chr3 8698277 8698315 -209338843 + MLT2B2 LTR ERVL 479 515 0 4416 228 90 52 chr3 8698315 8698567 -209338591 + L1M3e LINE L1 2449 2690 -3873 1264 226 15 11 chr3 8698603 8698869 -209338289 + Tigger7 DNA MER2_type 1 267 -466 307 225 14 14 chr3 8698867 8698938 -209338220 + Tigger7 DNA MER2_type 2389 2459 -28 * 312 222 14 14 chr3 8698959 8699031 -209338127 + Tigger7 DNA MER2_type 2389 2460 -27 335 197 0 28 chr3 8699052 8699123 -209338035 + Tigger7 DNA MER2_type 2396 2464 -27 284 236 14 14 chr3 8699143 8699215 -209337943 + Tigger7 DNA MER2_type 2389 2460 -27 473 223 0 21 chr3 8699236 8699330 -209337828 + Tigger7 DNA MER2_type 2392 2483 -4 6980 233 71 54 chr3 8699332 8700238 -209336920 + L1MC2 LINE L1 2866 3756 -3006 294 29 0 0 chr3 8700238 8700273 -209336885 + (TC)n Simple_repeat Simple_repeat 2 36 0 6980 233 71 54 chr3 8700273 8701255 -209335903 + L1MC2 LINE L1 3756 4720 -2042 1255 169 4 8 chr3 8701255 8701503 -209335655 + L1MA4 LINE L1 6053 6299 -1 6980 233 71 54 chr3 8701503 8703442 -209333716 + L1MC2 LINE L1 4720 6754 -8 5451 249 73 60 chr3 8703806 8705342 -209331816 - L1M4 LINE L1 -1145 5001 3409 2107 102 0 0 chr3 8705342 8705652 -209331506 - AluSq SINE Alu 0 310 1 5451 249 73 60 chr3 8705652 8706959 -209330199 - L1M4 LINE L1 -2737 3409 2120 3720 177 31 20 chr3 8706961 8707897 -209329261 + L1PA16 LINE L1 4964 5914 -252 889 148 13 19 chr3 8707911 8708066 -209329092 + L1PA16 LINE L1 6001 6154 -12 600 249 105 30 chr3 8708077 8708390 -209328768 + L1ME LINE L1 5191 5521 -645 * 29833 56 10 3 chr3 8708359 8712956 -209324202 + L1PA5 LINE L1 1524 6153 -1 5862 196 42 37 chr3 8713715 8716073 -209321085 - L1MA7 LINE L1 -10 7700 5325 3921 240 57 26 chr3 8716056 8717172 -209319986 - L1MA7 LINE L1 -2689 4876 3687 * 2484 135 3 3 chr3 8717172 8717535 -209319623 - THE1B LTR MaLR -1 363 1 3921 240 57 26 chr3 8717535 8717935 -209319223 - L1MA7 LINE L1 -3878 3687 3301 1975 254 41 25 chr3 8718132 8718688 -209318470 - L1MA7 LINE L1 -5715 1781 1217 335 241 116 9 chr3 8719420 8719532 -209317626 + MLT1J2 LTR MaLR 324 447 -3 499 331 66 54 chr3 8719549 8720047 -209317111 - L2 LINE L2 -6 3307 2804 1579 163 0 7 chr3 8720116 8720386 -209316772 + AluJb SINE Alu 1 268 -44 204 143 0 0 chr3 8720390 8720432 -209316726 + (GAAA)n Simple_repeat Simple_repeat 4 45 0 607 184 11 34 chr3 8720440 8720619 -209316539 + GA-rich Low_complexity Low_complexity 2 176 0 695 361 92 24 chr3 8720787 8721333 -209315825 - L2 LINE L2 -650 2664 2082 251 248 29 88 chr3 8723804 8723941 -209313217 - L1MC4 LINE L1 0 8042 7914 1010 278 59 62 chr3 8724047 8724687 -209312471 - L1MC4 LINE L1 -203 7839 7202 1544 214 31 0 chr3 8724743 8725103 -209312055 - L1MD1 LINE L1 -8 6628 6258 2815 230 15 20 chr3 8725104 8725934 -209311224 - L1MD1 LINE L1 -428 6208 5376 1377 189 20 20 chr3 8725934 8726235 -209310923 - L1MB2 LINE L1 -8 6163 5863 2815 230 15 20 chr3 8726235 8726286 -209310872 - L1MD1 LINE L1 -1260 5376 5326 189 74 0 0 chr3 8726286 8726313 -209310845 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 2815 230 15 20 chr3 8726313 8726436 -209310722 - L1MD1 LINE L1 -1310 5326 5213 985 269 85 13 chr3 8726433 8727104 -209310054 - L1MD1 LINE L1 -2405 4135 3397 * 398 170 7 54 chr3 8727117 8727209 -209309949 - L1MD1 LINE L1 -3962 2578 2494 2338 88 0 3 chr3 8727209 8727515 -209309643 - AluSx SINE Alu -7 305 1 398 170 7 54 chr3 8727515 8727569 -209309589 - L1MD1 LINE L1 -4046 2494 2439 1612 229 72 105 chr3 8727619 8728199 -209308959 + MER77 LTR ERV1 41 601 -4 3268 235 170 50 chr3 8728229 8728356 -209308802 - L1MD1 LINE L1 -5137 1403 1293 1763 156 0 11 chr3 8728356 8728638 -209308520 - AluSg SINE Alu -31 279 1 3268 235 170 50 chr3 8728638 8729749 -209307409 - L1MD1 LINE L1 -5247 1293 16 303 326 11 0 chr3 8729934 8730023 -209307135 + L2 LINE L2 3199 3288 -25 316 298 109 32 chr3 8731679 8731927 -209305231 + L1ME4a LINE L1 5842 6108 -13 485 190 84 42 chr3 8732701 8732843 -209304315 + MIR SINE MIR 102 249 -13 199 263 0 0 chr3 8732891 8732929 -209304229 + L2 LINE L2 3251 3288 -25 374 139 14 0 chr3 8732938 8733010 -209304148 + (ATG)n Simple_repeat Simple_repeat 1 73 0 297 368 8 45 chr3 8733058 8733191 -209303967 + MER91A DNA MER1_type 47 174 -22 3664 125 49 16 chr3 8733523 8734155 -209303003 + MER39B LTR ERV1 1 653 0 2333 103 0 0 chr3 8734234 8734535 -209302623 - AluSc SINE Alu -8 301 1 262 304 44 44 chr3 8736018 8736153 -209301005 + MER5C DNA MER1_type 1 135 -189 224 232 0 18 chr3 8736474 8736530 -209300628 - MIR SINE MIR -25 237 183 218 308 56 19 chr3 8736806 8736913 -209300245 + MIR SINE MIR 46 156 -106 274 263 0 13 chr3 8737342 8737418 -209299740 + MIR SINE MIR 172 246 -16 189 360 101 36 chr3 8737591 8737730 -209299428 + MIR3 SINE MIR 16 163 -45 1080 148 32 0 chr3 8737971 8738160 -209298998 - Tigger4(Zombi) DNA MER2_type 0 2731 2537 1562 214 62 10 chr3 8738165 8738469 -209298689 - Tigger4(Zombi) DNA MER2_type -2410 321 2 819 189 60 78 chr3 8739713 8739930 -209297228 + MER20 DNA MER1_type 7 219 0 2319 184 19 17 chr3 8740154 8740622 -209296536 - MER39 LTR ERV1 -6 701 233 253 122 22 89 chr3 8740721 8740811 -209296347 + (ATATG)n Simple_repeat Simple_repeat 2 85 0 799 276 94 74 chr3 8741024 8741564 -209295594 + LTR1B LTR ERV1 39 589 -237 1889 206 43 5 chr3 8742405 8742803 -209294355 + MER34C LTR ERV1 172 584 -1 505 240 25 8 chr3 8742804 8742925 -209294233 + MIR SINE MIR 116 238 -24 214 343 0 0 chr3 8742933 8743003 -209294155 + MIR SINE MIR 193 262 0 1368 134 44 19 chr3 8743664 8744099 -209293059 + LTR54 LTR ERV1 2 508 -2 25 0 0 0 chr3 8744679 8744704 -209292454 + AT_rich Low_complexity Low_complexity 1 25 0 398 322 94 55 chr3 8744940 8744976 -209292182 - L2 LINE L2 -465 2849 2816 225 0 0 0 chr3 8744976 8745001 -209292157 + (CAGAGA)n Simple_repeat Simple_repeat 3 27 0 398 322 94 55 chr3 8745001 8745433 -209291725 - L2 LINE L2 -498 2816 2363 502 375 11 23 chr3 8745463 8745610 -209291548 - L3 LINE CR1 -473 1104 960 853 228 105 40 chr3 8745610 8746010 -209291148 + LTR37A LTR ERV1 1 426 0 502 375 11 23 chr3 8746010 8746126 -209291032 - L3 LINE CR1 -617 960 844 844 114 16 0 chr3 8746238 8746361 -209290797 + AluSp/q SINE Alu 177 301 -12 300 283 40 0 chr3 8746911 8747005 -209290153 - MER34 LTR ERV1 0 542 445 339 217 0 0 chr3 8747005 8747065 -209290093 - Tigger5 DNA MER2_type 0 2323 2264 236 213 0 98 chr3 8747086 8747147 -209290011 - Tigger5 DNA MER2_type -2268 55 1 267 146 107 117 chr3 8747147 8747234 -209289924 - LTR49 LTR ERV1 -90 505 420 2223 187 69 16 chr3 8747234 8747828 -209289330 + MER39 LTR ERV1 1 707 0 540 249 57 40 chr3 8747828 8748194 -209288964 - LTR48B LTR ERV1 -179 608 1 21 0 0 0 chr3 8748338 8748359 -209288799 + AT_rich Low_complexity Low_complexity 1 21 0 1736 180 7 7 chr3 8748868 8749174 -209287984 + AluJo SINE Alu 1 306 -6 200 85 21 43 chr3 8750595 8750642 -209286516 + (TAA)n Simple_repeat Simple_repeat 2 47 0 630 179 15 45 chr3 8750974 8751108 -209286050 - FLAM_A SINE Alu -3 130 1 1765 232 73 13 chr3 8751292 8751887 -209285271 + MER39 LTR ERV1 1 707 0 24 53 0 0 chr3 8752153 8752191 -209284967 + AT_rich Low_complexity Low_complexity 1 38 0 2269 109 0 3 chr3 8753159 8753471 -209283687 - AluSx SINE Alu -1 311 1 622 225 55 69 chr3 8754131 8754349 -209282809 + MER58C DNA MER1_type 1 215 0 233 250 89 0 chr3 8754712 8754768 -209282390 - L2 LINE L2 -73 3240 3180 1020 206 5 0 chr3 8755357 8755561 -209281597 - MER3 DNA MER1_type -4 205 1 264 250 135 0 chr3 8755815 8755911 -209281247 - L1ME3A LINE L1 -22 6148 6040 2385 75 0 0 chr3 8757180 8757473 -209279685 + AluY SINE Alu 1 293 -18 234 0 0 0 chr3 8757792 8757818 -209279340 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 237 33 0 0 chr3 8757817 8757847 -209279311 + (GA)n Simple_repeat Simple_repeat 1 30 0 309 322 66 16 chr3 8757848 8757969 -209279189 + L2 LINE L2 3187 3313 0 3004 197 22 35 chr3 8758547 8759468 -209277690 + L1MA6 LINE L1 4654 5585 -715 2093 67 0 4 chr3 8759468 8759737 -209277421 - AluY SINE Alu -7 304 37 3004 197 22 35 chr3 8759737 8760012 -209277146 + L1MA6 LINE L1 5585 5862 -438 216 0 0 0 chr3 8760012 8760036 -209277122 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 300 27 0 0 chr3 8760035 8760072 -209277086 + (CA)n Simple_repeat Simple_repeat 1 37 0 3004 197 22 35 chr3 8760036 8760577 -209276581 + L1MA6 LINE L1 5862 6300 0 453 299 199 19 chr3 8761602 8761813 -209275345 + MIR SINE MIR 13 261 -1 222 325 136 26 chr3 8762180 8762334 -209274824 + MIR3 SINE MIR 29 199 -9 1120 245 66 23 chr3 8762785 8763132 -209274026 - MLT1A1 LTR MaLR -3 362 1 2259 110 7 0 chr3 8763598 8763907 -209273251 + AluSq SINE Alu 1 311 -2 1376 162 78 60 chr3 8763918 8764251 -209272907 - MER44D DNA MER2_type 0 609 1 1504 196 25 71 chr3 8764631 8765023 -209272135 + MLT1A2 LTR MaLR 1 374 0 1057 203 5 5 chr3 8765413 8765610 -209271548 + AluJo SINE Alu 104 300 -12 451 292 37 33 chr3 8765648 8766075 -209271083 + L1ME LINE L1 5204 5636 -534 1509 167 0 116 chr3 8766442 8766795 -209270363 + AluJo SINE Alu 1 312 0 474 242 75 17 chr3 8768007 8768127 -209269031 - L2 LINE L2 0 3313 3187 236 324 56 19 chr3 8768721 8768829 -209268329 - L2 LINE L2 -206 3066 2955 200 205 0 0 chr3 8768894 8768933 -209268225 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 21 36 0 0 chr3 8769525 8769553 -209267605 + AT_rich Low_complexity Low_complexity 1 28 0 2296 104 0 0 chr3 8770353 8770651 -209266507 - AluSx SINE Alu -14 298 1 606 256 102 76 chr3 8770658 8771079 -209266079 - L1ME2 LINE L1 -1 6163 5732 388 242 40 32 chr3 8772200 8772324 -209264834 + MIR SINE MIR 94 218 -44 371 356 94 32 chr3 8772824 8773377 -209263781 + L2 LINE L2 1818 2404 -910 2102 148 85 10 chr3 8773885 8774283 -209262875 - MSTA LTR MaLR 0 428 1 9133 154 6 35 chr3 8774283 8775908 -209261250 - MSTA-int LTR MaLR 0 1580 3 2181 131 79 22 chr3 8775910 8776315 -209260843 - MSTA LTR MaLR 0 428 1 258 116 0 0 chr3 8776999 8777042 -209260116 + (GA)n Simple_repeat Simple_repeat 2 44 0 273 314 12 12 chr3 8777099 8777185 -209259973 - L2 LINE L2 -8 3264 3179 280 365 19 0 chr3 8777633 8777740 -209259418 + MIR SINE MIR 30 138 -70 193 267 133 13 chr3 8778557 8778632 -209258526 - MIR SINE MIR -11 251 168 433 224 97 30 chr3 8779053 8779290 -209257868 + HAL1b LINE L1 909 1161 -187 352 341 65 14 chr3 8780069 8780286 -209256872 - MIR SINE MIR -15 247 20 1706 219 88 17 chr3 8780338 8780725 -209256433 + MLT2C2 LTR ERVL 11 432 -32 303 28 0 0 chr3 8780725 8780761 -209256397 + (CA)n Simple_repeat Simple_repeat 2 37 0 1706 219 88 17 chr3 8780761 8780794 -209256364 + MLT2C2 LTR ERVL 432 461 -3 2224 115 51 28 chr3 8781130 8781486 -209255672 - THE1B LTR MaLR 0 364 1 11219 108 4 4 chr3 8781487 8783065 -209254093 - THE1B-int LTR MaLR -1 1579 1 2200 130 0 0 chr3 8783097 8783404 -209253754 - AluSc SINE Alu -2 307 1 2048 135 51 31 chr3 8783404 8783760 -209253398 - THE1B LTR MaLR -1 363 1 914 249 72 16 chr3 8783890 8783974 -209253184 + MER113 DNA MER1_type? 2 80 -441 1922 190 115 26 chr3 8783974 8784479 -209252679 - MER44D DNA MER2_type 0 605 1 914 249 72 16 chr3 8784479 8784768 -209252390 + MER113 DNA MER1_type? 80 396 -125 450 296 101 5 chr3 8785389 8785578 -209251580 - L3 LINE CR1 -97 1480 1274 225 192 19 19 chr3 8786314 8786366 -209250792 + GA-rich Low_complexity Low_complexity 1 52 0 2300 158 57 0 chr3 8786577 8786982 -209250176 + MSTA LTR MaLR 1 428 0 7899 183 71 7 chr3 8786982 8788520 -209248638 + MSTA-int LTR MaLR 1 1637 -14 2316 170 39 0 chr3 8788544 8788956 -209248202 + MSTA LTR MaLR 1 428 0 537 317 31 9 chr3 8789625 8789849 -209247309 - MER110 LTR ERV1 -93 398 170 241 282 42 0 chr3 8789939 8790010 -209247148 - MER110 LTR ERV1 -317 174 101 985 86 43 0 chr3 8790417 8790557 -209246601 - AluY SINE Alu 0 311 166 447 267 26 10 chr3 8790588 8790776 -209246382 - MER5B DNA MER1_type 0 178 12 267 368 63 45 chr3 8790917 8791514 -209245644 - L2 LINE L2 -167 3105 2489 1616 171 0 0 chr3 8792442 8792717 -209244441 + L1MC1 LINE L1 6058 6332 -1 233 372 47 17 chr3 8793086 8793221 -209243937 + MIR SINE MIR 13 156 -106 9082 108 12 2 chr3 8793221 8794495 -209242663 + HSMAR1 DNA Mariner 1 1287 0 233 372 47 17 chr3 8794495 8794531 -209242627 + MIR SINE MIR 156 189 -73 270 308 98 35 chr3 8794561 8794704 -209242454 + MIR3 SINE MIR 50 201 -7 2337 90 0 0 chr3 8795038 8795326 -209241832 + AluSc SINE Alu 5 292 -17 639 158 48 24 chr3 8795333 8795498 -209241660 - MER53 DNA DNA -19 170 2 294 300 25 56 chr3 8796589 8796749 -209240409 + MIR SINE MIR 64 218 -44 530 284 88 77 chr3 8797991 8798343 -209238815 - L2 LINE L2 -14 3299 2944 26 0 0 0 chr3 8799449 8799475 -209237683 + AT_rich Low_complexity Low_complexity 1 26 0 481 309 104 54 chr3 8799567 8799991 -209237167 - MLT1K LTR MaLR -43 545 101 384 298 19 10 chr3 8800141 8800277 -209236881 - MIR SINE MIR -68 140 6 2697 26 3 0 chr3 8800989 8801299 -209235859 - AluY SINE Alu 0 311 1 345 272 173 25 chr3 8801382 8801544 -209235614 - MER5A DNA MER1_type 0 189 4 199 322 132 16 chr3 8803034 8803155 -209234003 - MIR SINE MIR -109 153 19 217 304 0 14 chr3 8803324 8803393 -209233765 + GA-rich Low_complexity Low_complexity 3 70 0 7385 32 2 2 chr3 8803687 8804877 -209232281 - L1PA4 LINE L1 -6 6149 4960 243 200 24 12 chr3 8805044 8805129 -209232029 + CT-rich Low_complexity Low_complexity 3 88 0 1931 132 60 0 chr3 8805439 8805720 -209231438 + AluSx SINE Alu 1 298 -14 27 29 0 0 chr3 8806173 8806207 -209230951 + AT_rich Low_complexity Low_complexity 1 34 0 387 0 0 0 chr3 8806222 8806265 -209230893 + (TA)n Simple_repeat Simple_repeat 2 44 0 214 244 0 0 chr3 8806387 8806428 -209230730 - L2 LINE L2 -48 3265 3225 206 160 20 0 chr3 8806486 8806536 -209230622 + (TA)n Simple_repeat Simple_repeat 1 51 0 1522 174 144 17 chr3 8806817 8807178 -209229980 - MLT1D LTR MaLR -2 503 97 203 203 16 0 chr3 8807491 8807555 -209229603 + (TA)n Simple_repeat Simple_repeat 2 66 0 21 57 0 0 chr3 8808064 8808099 -209229059 + AT_rich Low_complexity Low_complexity 1 35 0 1583 266 53 21 chr3 8808099 8808139 -209229019 + L1MDb LINE L1 61 98 -6311 1585 210 48 11 chr3 8808139 8808491 -209228667 - MLT1A1 LTR MaLR 0 365 1 1583 266 53 21 chr3 8808491 8809015 -209228143 + L1MDb LINE L1 98 643 -5766 352 327 22 54 chr3 8809002 8809230 -209227928 + L1MDb LINE L1 406 650 -5759 * 590 279 21 37 chr3 8809261 8809451 -209227707 + L1MDb LINE L1 661 847 -5562 1647 224 72 93 chr3 8809455 8810312 -209226846 + L1MDb LINE L1 914 1752 -4654 490 275 25 63 chr3 8810357 8810641 -209226517 - L1MDa LINE L1 -4369 2171 1899 3518 234 31 75 chr3 8810653 8812280 -209224878 + L1MDb LINE L1 2560 4114 -2292 2234 119 3 0 chr3 8812715 8813025 -209224133 - AluSp SINE Alu -2 311 1 73 32 0 0 chr3 8813795 8813889 -209223269 + AT_rich Low_complexity Low_complexity 1 94 0 1424 239 58 3 chr3 8813900 8814280 -209222878 + L1MDb LINE L1 4099 4499 -1907 880 281 4 28 chr3 8814515 8814764 -209222394 + MLT1E LTR MaLR 351 593 0 210 71 0 0 chr3 8815167 8815195 -209221963 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 279 0 0 0 chr3 8815256 8815287 -209221871 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1157 101 6 24 chr3 8815293 8815462 -209221696 - AluY SINE Alu -145 166 1 21 36 0 0 chr3 8816967 8816995 -209220163 + AT_rich Low_complexity Low_complexity 1 28 0 419 242 74 0 chr3 8817991 8818086 -209219072 - MLT1H LTR MaLR -315 234 133 27 0 0 0 chr3 8818570 8818597 -209218561 + AT_rich Low_complexity Low_complexity 1 27 0 731 289 7 49 chr3 8819476 8819780 -209217378 + L1PA15 LINE L1 1280 1570 -5217 293 259 12 0 chr3 8819778 8819859 -209217299 + L1PA15 LINE L1 1489 1570 -5217 * 269 272 12 0 chr3 8819857 8819938 -209217220 + L1PA15 LINE L1 1489 1570 -5217 * 269 272 12 0 chr3 8819936 8820017 -209217141 + L1PA15 LINE L1 1489 1570 -5217 269 272 12 0 chr3 8820015 8820096 -209217062 + L1PA15 LINE L1 1489 1570 -5217 269 272 12 0 chr3 8820094 8820175 -209216983 + L1PA15 LINE L1 1489 1570 -5217 * 15262 210 21 16 chr3 8820173 8824659 -209212499 + L1PA15 LINE L1 1489 6012 -804 2105 126 3 0 chr3 8824659 8824953 -209212205 + AluSg SINE Alu 2 296 -14 15262 210 21 16 chr3 8824953 8825760 -209211398 + L1PA15 LINE L1 6012 6813 -3 32 43 0 0 chr3 8825784 8825830 -209211328 + AT_rich Low_complexity Low_complexity 1 46 0 386 286 57 65 chr3 8826755 8827000 -209210158 + MLT1L LTR MaLR 129 371 -244 409 129 0 0 chr3 8828026 8828096 -209209062 - L1PB3 LINE L1 -2 6152 6083 4309 138 6 6 chr3 8828327 8829000 -209208158 - L1PB3 LINE L1 -45 6109 5437 1490 214 20 23 chr3 8828993 8829385 -209207773 + L1P LINE L1 4958 5348 -798 * 574 131 0 0 chr3 8829386 8829470 -209207688 - AluS SINE Alu -228 84 1 506 338 46 9 chr3 8829732 8829951 -209207207 - MIR SINE MIR -27 235 9 189 0 0 0 chr3 8830206 8830227 -209206931 + (TG)n Simple_repeat Simple_repeat 2 22 0 358 265 29 37 chr3 8830906 8831042 -209206116 - MLT1K LTR MaLR -8 580 446 499 275 70 31 chr3 8831881 8832110 -209205048 - L2 LINE L2 -4 3309 3072 180 394 16 37 chr3 8832282 8832470 -209204688 + L2 LINE L2 2988 3171 -142 412 173 71 0 chr3 8832476 8832644 -209204514 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 414 127 58 58 chr3 8832606 8832779 -209204379 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 430 287 31 8 chr3 8832968 8833097 -209204061 + L2 LINE L2 3173 3304 -9 201 328 172 40 chr3 8833127 8833301 -209203857 + MIR SINE MIR 4 200 -62 208 219 0 62 chr3 8833386 8833450 -209203708 - L2 LINE L2 0 3313 3254 21 36 0 0 chr3 8834395 8834423 -209202735 + AT_rich Low_complexity Low_complexity 1 28 0 305 24 24 0 chr3 8834423 8834465 -209202693 + (TC)n Simple_repeat Simple_repeat 2 44 0 826 227 13 40 chr3 8835362 8835587 -209201571 + MER20 DNA MER1_type 1 219 0 189 0 0 0 chr3 8835736 8835757 -209201401 + (TA)n Simple_repeat Simple_repeat 1 21 0 1761 184 7 3 chr3 8835757 8836051 -209201107 - AluJb SINE Alu -17 295 1 750 201 84 11 chr3 8836841 8837020 -209200138 + LTR47A LTR ERVL 261 452 0 521 173 18 125 chr3 8837419 8837446 -209199712 - MER5B DNA MER1_type -1 177 149 1468 191 71 31 chr3 8837446 8837797 -209199361 + MLT1A1 LTR MaLR 1 365 0 521 173 18 125 chr3 8837797 8837937 -209199221 - MER5B DNA MER1_type -29 149 28 225 65 0 0 chr3 8838002 8838033 -209199125 + (TC)n Simple_repeat Simple_repeat 2 32 0 335 282 116 39 chr3 8838104 8838285 -209198873 - MIR SINE MIR 0 262 68 216 298 0 0 chr3 8838360 8838417 -209198741 + MER5B DNA MER1_type 2 58 -120 7600 201 41 13 chr3 8838424 8838993 -209198165 + L1MC3 LINE L1 6059 6610 -1175 3660 68 0 6 chr3 8838993 8839476 -209197682 - L1PA8 LINE L1 0 6172 5693 7600 201 41 13 chr3 8839476 8840574 -209196584 + L1MC3 LINE L1 6610 7773 -12 341 250 29 58 chr3 8840623 8840727 -209196431 - MER5B DNA MER1_type -71 107 7 2506 50 7 0 chr3 8840967 8841270 -209195888 + AluY SINE Alu 2 306 -5 309 179 0 0 chr3 8842245 8842291 -209194867 + (TG)n Simple_repeat Simple_repeat 2 50 -18 1974 169 31 6 chr3 8842291 8842646 -209194512 - THE1B LTR MaLR 0 364 1 309 179 0 0 chr3 8842646 8842666 -209194492 + (TG)n Simple_repeat Simple_repeat 49 68 0 247 281 0 0 chr3 8842730 8842787 -209194371 - MIR3 SINE MIR -50 158 102 771 312 0 14 chr3 8844164 8844385 -209192773 + MIR SINE MIR 45 262 0 21 57 0 0 chr3 8844816 8844851 -209192307 + AT_rich Low_complexity Low_complexity 1 35 0 2074 150 14 6 chr3 8847376 8847735 -209189423 - L1MA5 LINE L1 -478 5822 5461 2314 171 18 13 chr3 8847739 8848195 -209188963 + L1MA5 LINE L1 5843 6300 0 1004 322 29 17 chr3 8848381 8848883 -209188275 + MLT1H LTR MaLR 1 549 0 3841 175 4 4 chr3 8849288 8849990 -209187168 + L1MB1 LINE L1 5479 6180 -9 869 179 104 112 chr3 8850053 8850216 -209186942 - MER2 DNA MER2_type -1 344 181 2228 133 128 8 chr3 8850216 8850598 -209186560 - MSTA LTR MaLR 0 428 1 869 179 104 112 chr3 8850598 8850781 -209186377 - MER2 DNA MER2_type -164 181 1 195 311 14 0 chr3 8850811 8850885 -209186273 - MIR3 SINE MIR -12 196 122 223 308 0 15 chr3 8851254 8851319 -209185839 + L3b LINE CR1 1206 1269 -314 333 305 178 5 chr3 8853294 8853491 -209183667 + MIR SINE MIR 29 259 -3 1611 186 21 0 chr3 8853547 8853827 -209183331 + AluJo SINE Alu 1 286 -26 243 0 0 0 chr3 8853827 8853854 -209183304 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 2331 106 0 0 chr3 8855188 8855500 -209181658 + AluSx SINE Alu 1 312 0 1939 130 0 23 chr3 8856136 8856436 -209180722 - MER4A LTR ERV1 0 664 372 586 133 0 10 chr3 8856489 8856587 -209180571 - MER4A LTR ERV1 -566 98 2 475 244 1 22 chr3 8857530 8857640 -209179518 + MLT1E LTR MaLR 58 163 -404 214 181 0 24 chr3 8857640 8857723 -209179435 + (TA)n Simple_repeat Simple_repeat 1 81 0 1746 224 38 33 chr3 8857747 8858140 -209179018 + MLT1E LTR MaLR 199 593 0 1803 131 60 0 chr3 8858337 8858626 -209178532 - AluSx SINE Alu 0 305 1 566 261 48 52 chr3 8859587 8859836 -209177322 + LTR16A1 LTR ERVL 209 456 -1 21 0 0 0 chr3 8860207 8860228 -209176930 + AT_rich Low_complexity Low_complexity 1 21 0 232 286 0 0 chr3 8860377 8860440 -209176718 + (CA)n Simple_repeat Simple_repeat 2 64 0 207 100 0 0 chr3 8861375 8861405 -209175753 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 764 160 8 8 chr3 8862153 8862284 -209174874 - FLAM_C SINE Alu 0 133 3 353 295 38 0 chr3 8863437 8863542 -209173616 - MIR SINE MIR -104 158 50 321 277 52 59 chr3 8864868 8865142 -209172016 + L1ME4a LINE L1 5634 5908 -213 2012 141 10 0 chr3 8865142 8865439 -209171719 + AluSx SINE Alu 1 300 -12 321 277 52 59 chr3 8865439 8865481 -209171677 + L1ME4a LINE L1 5908 5949 -172 3144 167 86 28 chr3 8865481 8866168 -209170990 - LTR8A LTR ERV1 0 727 1 321 277 52 59 chr3 8866168 8866272 -209170886 + L1ME4a LINE L1 5949 6052 -69 429 353 108 4 chr3 8866876 8867154 -209170004 + L2 LINE L2 211 517 -2797 615 340 199 16 chr3 8867248 8868021 -209169137 + L2 LINE L2 982 1896 -1418 36 77 0 0 chr3 8868392 8868470 -209168688 + AT_rich Low_complexity Low_complexity 1 78 0 415 175 0 19 chr3 8868659 8868762 -209168396 + CT-rich Low_complexity Low_complexity 2 102 0 2448 63 0 0 chr3 8869274 8869576 -209167582 + AluY SINE Alu 1 302 -9 2287 83 0 13 chr3 8869971 8870271 -209166887 + AluSq SINE Alu 1 296 -17 220 211 42 28 chr3 8871637 8871708 -209165450 + (CAGAGA)n Simple_repeat Simple_repeat 4 75 0 23 33 0 0 chr3 8871866 8871896 -209165262 + AT_rich Low_complexity Low_complexity 1 30 0 311 313 99 15 chr3 8872190 8872321 -209164837 - MER5A DNA MER1_type -1 188 47 280 283 132 9 chr3 8872235 8872341 -209164817 + MER5A DNA MER1_type 68 186 -3 * 361 302 35 35 chr3 8872371 8872487 -209164671 + MIR SINE MIR 30 145 -63 471 143 36 0 chr3 8872495 8872579 -209164579 + L1MA5 LINE L1 6209 6295 -5 31 58 0 0 chr3 8872699 8872751 -209164407 + AT_rich Low_complexity Low_complexity 1 52 0 1912 178 3 23 chr3 8874218 8874572 -209162586 + MER7A DNA MER2_type 2 346 0 21 57 0 0 chr3 8874703 8874738 -209162420 + AT_rich Low_complexity Low_complexity 1 35 0 5530 166 26 24 chr3 8875048 8875939 -209161219 + L1MA6 LINE L1 4422 5310 -990 1952 131 40 0 chr3 8875939 8876237 -209160921 + AluSx SINE Alu 1 310 -2 5530 166 26 24 chr3 8876237 8877020 -209160138 + L1MA6 LINE L1 5310 6090 -210 2156 103 7 3 chr3 8877020 8877311 -209159847 + AluSx SINE Alu 1 292 -20 231 114 0 0 chr3 8877311 8877346 -209159812 + (TA)n Simple_repeat Simple_repeat 1 35 0 5530 166 26 24 chr3 8877346 8877525 -209159633 + L1MA6 LINE L1 6089 6294 -6 771 314 89 14 chr3 8877540 8878024 -209159134 + HAL1b LINE L1 305 824 -524 251 324 57 27 chr3 8878509 8878987 -209158171 + L1MC/D LINE L1 4168 4659 -1487 316 290 41 14 chr3 8879094 8879239 -209157919 + L1MC/D LINE L1 4804 4952 -1194 301 244 67 110 chr3 8879453 8879662 -209157496 + L1MC/D LINE L1 5259 5458 -2350 286 331 43 38 chr3 8879746 8879930 -209157228 + L1MC/D LINE L1 5574 5758 -2050 276 277 15 42 chr3 8880273 8880512 -209156646 + CT-rich Low_complexity Low_complexity 1 232 0 220 149 19 56 chr3 8880513 8880620 -209156538 + T-rich Low_complexity Low_complexity 5 107 0 6475 35 2 1 chr3 8880712 8882106 -209155052 - L1PA2 LINE L1 -156 5999 4605 358 265 29 37 chr3 8883223 8883359 -209153799 + MLT1K LTR MaLR 446 580 -8 475 244 1 22 chr3 8884477 8884587 -209152571 + MLT1E LTR MaLR 58 163 -404 214 181 0 24 chr3 8884587 8884670 -209152488 + (TA)n Simple_repeat Simple_repeat 2 82 0 1746 224 38 33 chr3 8884694 8885087 -209152071 + MLT1E LTR MaLR 199 593 0 2022 130 0 0 chr3 8885284 8885589 -209151569 - AluSx SINE Alu 0 305 1 584 233 95 98 chr3 8885596 8886017 -209151141 - L1ME1 LINE L1 -1 6163 5729 388 242 40 32 chr3 8887138 8887262 -209149896 + MIR SINE MIR 94 218 -44 339 356 96 36 chr3 8887762 8888316 -209148842 + L2 LINE L2 1818 2404 -910 1737 173 93 18 chr3 8888824 8889222 -209147936 - MSTA LTR MaLR 0 428 1 9057 156 6 35 chr3 8889222 8890848 -209146310 - MSTA-int LTR MaLR 0 1580 3 381 269 11 0 chr3 8890850 8890943 -209146215 - MSTA LTR MaLR 0 428 335 21 36 0 0 chr3 8891203 8891231 -209145927 + AT_rich Low_complexity Low_complexity 1 28 0 1014 287 44 75 chr3 8891826 8892414 -209144744 + L1MCb LINE L1 13 582 -5463 1737 186 0 7 chr3 8893021 8893316 -209143842 - AluJo SINE Alu -17 295 3 353 295 38 0 chr3 8894469 8894574 -209142584 - MIR SINE MIR -104 158 50 315 274 49 74 chr3 8895900 8896182 -209140976 + L1ME4a LINE L1 5634 5922 -199 1902 156 10 0 chr3 8896182 8896471 -209140687 + AluJb SINE Alu 9 300 -12 315 274 49 74 chr3 8896471 8896513 -209140645 + L1ME4a LINE L1 5922 5964 -157 3060 169 87 29 chr3 8896513 8897200 -209139958 - LTR8A LTR ERV1 0 727 1 315 274 49 74 chr3 8897200 8897304 -209139854 + L1ME4a LINE L1 5964 6052 -69 419 242 74 0 chr3 8898629 8898724 -209138434 - MLT1H LTR MaLR -315 234 133 27 0 0 0 chr3 8899208 8899235 -209137923 + AT_rich Low_complexity Low_complexity 1 27 0 731 289 7 49 chr3 8900114 8900418 -209136740 + L1PA4 LINE L1 1280 1570 -5217 293 259 12 0 chr3 8900416 8900497 -209136661 + L1PA4 LINE L1 1489 1570 -5217 * 269 272 12 0 chr3 8900495 8900576 -209136582 + L1PA4 LINE L1 1489 1570 -5217 * 269 272 12 0 chr3 8900574 8900655 -209136503 + L1PA4 LINE L1 1489 1570 -5217 269 272 12 0 chr3 8900653 8900734 -209136424 + L1PA4 LINE L1 1489 1570 -5217 * 17935 181 11 12 chr3 8900732 8905886 -209131272 + L1PA4 LINE L1 1489 6655 -151 1368 134 44 19 chr3 8906391 8906826 -209130332 + LTR54 LTR ERV1 2 508 -2 25 0 0 0 chr3 8907406 8907431 -209129727 + AT_rich Low_complexity Low_complexity 1 25 0 398 322 94 55 chr3 8907668 8907704 -209129454 - L2 LINE L2 -465 2849 2816 225 0 0 0 chr3 8907704 8907729 -209129429 + (CAGAGA)n Simple_repeat Simple_repeat 3 27 0 398 322 94 55 chr3 8907729 8908161 -209128997 - L2 LINE L2 -498 2816 2363 496 374 11 26 chr3 8908191 8908339 -209128819 - L3 LINE CR1 -473 1104 960 845 228 105 40 chr3 8908339 8908738 -209128420 + LTR37A LTR ERV1 2 426 0 496 374 11 26 chr3 8908738 8908854 -209128304 - L3 LINE CR1 -617 960 844 844 114 16 0 chr3 8908966 8909089 -209128069 + AluSp/q SINE Alu 177 301 -12 300 283 40 0 chr3 8909639 8909733 -209127425 - MER34 LTR ERV1 0 542 445 339 217 0 0 chr3 8909733 8909793 -209127365 - Tigger5 DNA MER2_type 0 2323 2264 236 213 0 98 chr3 8909814 8909875 -209127283 - Tigger5 DNA MER2_type -2268 55 1 267 146 107 117 chr3 8909875 8909962 -209127196 - LTR49 LTR ERV1 -90 505 420 2169 192 69 16 chr3 8909962 8910556 -209126602 + MER39 LTR ERV1 1 707 0 540 249 57 40 chr3 8910556 8910922 -209126236 - LTR48B LTR ERV1 -179 608 1 21 0 0 0 chr3 8911066 8911087 -209126071 + AT_rich Low_complexity Low_complexity 1 21 0 764 167 8 8 chr3 8911597 8911729 -209125429 + FLAM_C SINE Alu 2 133 0 207 100 0 0 chr3 8912477 8912507 -209124651 + (TCTA)n Simple_repeat Simple_repeat 4 33 0 232 286 0 0 chr3 8913442 8913505 -209123653 + (TG)n Simple_repeat Simple_repeat 2 64 0 21 0 0 0 chr3 8913654 8913675 -209123483 + AT_rich Low_complexity Low_complexity 1 21 0 566 261 48 52 chr3 8914046 8914295 -209122863 - LTR16A1 LTR ERVL -1 456 209 240 324 56 19 chr3 8965814 8965922 -209071236 - L2 LINE L2 -206 3066 2955 200 205 0 0 chr3 8965987 8966026 -209071132 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 21 36 0 0 chr3 8966618 8966646 -209070512 + AT_rich Low_complexity Low_complexity 1 28 0 2309 104 0 0 chr3 8967446 8967744 -209069414 - AluSx SINE Alu -14 298 1 513 261 97 71 chr3 8967751 8968172 -209068986 - L1ME2 LINE L1 -1 6163 5732 381 242 40 32 chr3 8969293 8969417 -209067741 + MIR SINE MIR 94 218 -44 364 356 94 32 chr3 8969917 8970470 -209066688 + L2 LINE L2 1818 2404 -910 2102 148 85 10 chr3 8970978 8971376 -209065782 - MSTA LTR MaLR 0 428 1 9145 154 6 35 chr3 8971376 8973001 -209064157 - MSTA-int LTR MaLR 0 1580 3 2193 131 79 22 chr3 8973003 8973408 -209063750 - MSTA LTR MaLR 0 428 1 258 116 0 0 chr3 8974092 8974135 -209063023 + (GA)n Simple_repeat Simple_repeat 2 44 0 270 314 12 12 chr3 8974192 8974278 -209062880 - L2 LINE L2 -8 3264 3179 280 365 19 0 chr3 8974726 8974833 -209062325 + MIR SINE MIR 30 138 -70 188 267 133 13 chr3 8975650 8975725 -209061433 - MIR SINE MIR -11 251 168 374 224 97 30 chr3 8976146 8976383 -209060775 + HAL1b LINE L1 909 1161 -187 346 341 65 14 chr3 8977162 8977379 -209059779 - MIR SINE MIR -15 247 20 1570 219 88 17 chr3 8977431 8977818 -209059340 + MLT2C2 LTR ERVL 11 432 -32 303 28 0 0 chr3 8977818 8977854 -209059304 + (CA)n Simple_repeat Simple_repeat 2 37 0 1570 219 88 17 chr3 8977854 8977887 -209059271 + MLT2C2 LTR ERVL 432 461 -3 2231 115 51 28 chr3 8978223 8978579 -209058579 - THE1B LTR MaLR 0 364 1 10361 106 4 4 chr3 8978580 8980158 -209057000 - THE1B-int LTR MaLR -1 1579 1 2195 133 0 0 chr3 8980187 8980496 -209056662 - AluSc SINE Alu 0 309 1 2048 135 51 31 chr3 8980496 8980852 -209056306 - THE1B LTR MaLR -1 363 1 914 249 72 16 chr3 8980982 8981066 -209056092 + MER113 DNA MER1_type? 2 80 -441 1922 190 115 26 chr3 8981066 8981571 -209055587 - MER44D DNA MER2_type 0 605 1 914 249 72 16 chr3 8981571 8981860 -209055298 + MER113 DNA MER1_type? 80 396 -125 450 296 101 5 chr3 8982481 8982670 -209054488 - L3 LINE CR1 -97 1480 1274 225 192 19 19 chr3 8983406 8983458 -209053700 + GA-rich Low_complexity Low_complexity 1 52 0 2276 161 57 0 chr3 8983669 8984074 -209053084 + MSTA LTR MaLR 1 428 0 7899 183 71 7 chr3 8984074 8985612 -209051546 + MSTA-int LTR MaLR 1 1637 -14 2316 170 39 0 chr3 8985636 8986048 -209051110 + MSTA LTR MaLR 1 428 0 537 317 31 9 chr3 8986717 8986941 -209050217 - MER110 LTR ERV1 -93 398 170 241 282 42 0 chr3 8987031 8987102 -209050056 - MER110 LTR ERV1 -317 174 101 985 86 43 0 chr3 8987509 8987649 -209049509 - AluY SINE Alu 0 311 166 447 267 26 10 chr3 8987680 8987868 -209049290 - MER5B DNA MER1_type 0 178 12 267 368 63 45 chr3 8988009 8988606 -209048552 - L2 LINE L2 -167 3105 2489 1616 171 0 0 chr3 8989534 8989809 -209047349 + L1MC1 LINE L1 6058 6332 -1 233 372 47 17 chr3 8990178 8990313 -209046845 + MIR SINE MIR 13 156 -106 9082 108 12 2 chr3 8990313 8991587 -209045571 + HSMAR1 DNA Mariner 1 1287 0 233 372 47 17 chr3 8991587 8991623 -209045535 + MIR SINE MIR 156 189 -73 270 308 98 35 chr3 8991653 8991796 -209045362 + MIR3 SINE MIR 50 201 -7 2337 90 0 0 chr3 8992130 8992418 -209044740 + AluSc SINE Alu 5 292 -17 639 158 48 24 chr3 8992425 8992590 -209044568 - MER53 DNA DNA -19 170 2 294 300 25 56 chr3 8993681 8993841 -209043317 + MIR SINE MIR 64 218 -44 530 284 88 77 chr3 8995083 8995435 -209041723 - L2 LINE L2 -14 3299 2944 26 0 0 0 chr3 8996541 8996567 -209040591 + AT_rich Low_complexity Low_complexity 1 26 0 481 309 104 54 chr3 8996659 8997083 -209040075 - MLT1K LTR MaLR -43 545 101 384 298 19 10 chr3 8997233 8997369 -209039789 - MIR SINE MIR -68 140 6 2697 26 3 0 chr3 8998081 8998391 -209038767 - AluY SINE Alu 0 311 1 345 272 173 25 chr3 8998474 8998636 -209038522 - MER5A DNA MER1_type 0 189 4 199 322 132 16 chr3 9000126 9000247 -209036911 - MIR SINE MIR -109 153 19 217 304 0 14 chr3 9000416 9000485 -209036673 + GA-rich Low_complexity Low_complexity 3 70 0 7415 32 2 0 chr3 9000779 9001968 -209035190 - L1PA4 LINE L1 -6 6149 4960 243 200 24 12 chr3 9002135 9002220 -209034938 + CT-rich Low_complexity Low_complexity 3 88 0 1931 132 60 0 chr3 9002530 9002811 -209034347 + AluSx SINE Alu 1 298 -14 27 29 0 0 chr3 9003264 9003298 -209033860 + AT_rich Low_complexity Low_complexity 1 34 0 387 0 0 0 chr3 9003313 9003356 -209033802 + (TA)n Simple_repeat Simple_repeat 2 44 0 214 244 0 0 chr3 9003478 9003519 -209033639 - L2 LINE L2 -48 3265 3225 206 160 20 0 chr3 9003577 9003627 -209033531 + (TA)n Simple_repeat Simple_repeat 2 52 0 1522 174 144 17 chr3 9003908 9004269 -209032889 - MLT1D LTR MaLR -2 503 97 203 203 16 0 chr3 9004582 9004646 -209032512 + (TA)n Simple_repeat Simple_repeat 2 66 0 21 57 0 0 chr3 9005155 9005190 -209031968 + AT_rich Low_complexity Low_complexity 1 35 0 1583 266 53 21 chr3 9005190 9005230 -209031928 + L1MDb LINE L1 61 98 -6311 1585 210 48 11 chr3 9005230 9005582 -209031576 - MLT1A1 LTR MaLR 0 365 1 1583 266 53 21 chr3 9005582 9006106 -209031052 + L1MDb LINE L1 98 643 -5766 352 327 22 54 chr3 9006093 9006321 -209030837 + L1MDb LINE L1 406 650 -5759 * 590 279 21 37 chr3 9006352 9006542 -209030616 + L1MDb LINE L1 661 847 -5562 1647 224 72 93 chr3 9006546 9007403 -209029755 + L1MDb LINE L1 914 1752 -4654 490 275 25 63 chr3 9007448 9007732 -209029426 - L1MDa LINE L1 -4369 2171 1899 3518 234 31 75 chr3 9007744 9009371 -209027787 + L1MDb LINE L1 2560 4114 -2292 2234 119 3 0 chr3 9009806 9010116 -209027042 - AluSp SINE Alu -2 311 1 73 32 0 0 chr3 9010886 9010980 -209026178 + AT_rich Low_complexity Low_complexity 1 94 0 1424 239 58 3 chr3 9010991 9011371 -209025787 + L1MDb LINE L1 4099 4499 -1907 880 281 4 28 chr3 9011606 9011855 -209025303 + MLT1E LTR MaLR 351 593 0 210 71 0 0 chr3 9012258 9012286 -209024872 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 315 0 0 0 chr3 9012347 9012382 -209024776 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 1157 101 6 24 chr3 9012388 9012557 -209024601 - AluY SINE Alu -145 166 1 21 36 0 0 chr3 9014062 9014090 -209023068 + AT_rich Low_complexity Low_complexity 1 28 0 419 242 74 0 chr3 9015086 9015181 -209021977 - MLT1H LTR MaLR -315 234 133 27 0 0 0 chr3 9015665 9015692 -209021466 + AT_rich Low_complexity Low_complexity 1 27 0 731 289 7 49 chr3 9016571 9016875 -209020283 + L1PA15 LINE L1 1280 1570 -5217 293 259 12 0 chr3 9016873 9016954 -209020204 + L1PA15 LINE L1 1489 1570 -5217 * 269 272 12 0 chr3 9016952 9017033 -209020125 + L1PA15 LINE L1 1489 1570 -5217 * 269 272 12 0 chr3 9017031 9017112 -209020046 + L1PA15 LINE L1 1489 1570 -5217 269 272 12 0 chr3 9017110 9017191 -209019967 + L1PA15 LINE L1 1489 1570 -5217 269 272 12 0 chr3 9017189 9017270 -209019888 + L1PA15 LINE L1 1489 1570 -5217 * 15280 210 21 16 chr3 9017268 9021754 -209015404 + L1PA15 LINE L1 1489 6012 -804 2105 126 3 0 chr3 9021754 9022048 -209015110 + AluSg SINE Alu 2 296 -14 15280 210 21 16 chr3 9022048 9022855 -209014303 + L1PA15 LINE L1 6012 6813 -3 32 43 0 0 chr3 9022879 9022925 -209014233 + AT_rich Low_complexity Low_complexity 1 46 0 386 286 57 65 chr3 9023850 9024095 -209013063 + MLT1L LTR MaLR 129 371 -244 409 129 0 0 chr3 9025121 9025191 -209011967 - L1PB3 LINE L1 -2 6152 6083 4309 138 6 6 chr3 9025422 9026095 -209011063 - L1PB3 LINE L1 -45 6109 5437 1490 214 20 23 chr3 9026088 9026480 -209010678 + L1P LINE L1 4958 5348 -798 * 574 131 0 0 chr3 9026481 9026565 -209010593 - AluS SINE Alu -228 84 1 506 338 46 9 chr3 9026827 9027046 -209010112 - MIR SINE MIR -27 235 9 189 0 0 0 chr3 9027301 9027322 -209009836 + (TG)n Simple_repeat Simple_repeat 2 22 0 358 265 29 37 chr3 9028001 9028137 -209009021 - MLT1K LTR MaLR -8 580 446 499 275 70 31 chr3 9028976 9029205 -209007953 - L2 LINE L2 -4 3309 3072 180 394 16 37 chr3 9029377 9029565 -209007593 + L2 LINE L2 2988 3171 -142 412 173 71 0 chr3 9029571 9029739 -209007419 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 414 127 58 58 chr3 9029701 9029874 -209007284 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 430 287 31 8 chr3 9030063 9030192 -209006966 + L2 LINE L2 3173 3304 -9 201 328 172 40 chr3 9030222 9030396 -209006762 + MIR SINE MIR 4 200 -62 208 219 0 62 chr3 9030481 9030545 -209006613 - L2 LINE L2 0 3313 3254 21 36 0 0 chr3 9031490 9031518 -209005640 + AT_rich Low_complexity Low_complexity 1 28 0 305 24 24 0 chr3 9031518 9031560 -209005598 + (TC)n Simple_repeat Simple_repeat 2 44 0 826 227 13 40 chr3 9032457 9032682 -209004476 + MER20 DNA MER1_type 1 219 0 189 0 0 0 chr3 9032831 9032852 -209004306 + (TA)n Simple_repeat Simple_repeat 2 22 0 1761 184 7 3 chr3 9032852 9033146 -209004012 - AluJb SINE Alu -17 295 1 750 201 84 11 chr3 9033936 9034115 -209003043 + LTR47A LTR ERVL 261 452 0 521 173 18 125 chr3 9034514 9034541 -209002617 - MER5B DNA MER1_type -1 177 149 1468 191 71 31 chr3 9034541 9034892 -209002266 + MLT1A1 LTR MaLR 1 365 0 521 173 18 125 chr3 9034892 9035032 -209002126 - MER5B DNA MER1_type -29 149 28 225 65 0 0 chr3 9035097 9035128 -209002030 + (TC)n Simple_repeat Simple_repeat 2 32 0 335 282 116 39 chr3 9035199 9035380 -209001778 - MIR SINE MIR 0 262 68 216 298 0 0 chr3 9035455 9035512 -209001646 + MER5B DNA MER1_type 2 58 -120 7600 201 41 13 chr3 9035519 9036088 -209001070 + L1MC3 LINE L1 6059 6610 -1175 3660 68 0 6 chr3 9036088 9036571 -209000587 - L1PA8 LINE L1 0 6172 5693 7600 201 41 13 chr3 9036571 9037669 -208999489 + L1MC3 LINE L1 6610 7773 -12 341 250 29 58 chr3 9037718 9037822 -208999336 - MER5B DNA MER1_type -71 107 7 2506 50 7 0 chr3 9038062 9038365 -208998793 + AluY SINE Alu 2 306 -5 309 179 0 0 chr3 9039340 9039386 -208997772 + (TG)n Simple_repeat Simple_repeat 2 50 -18 1974 169 31 6 chr3 9039386 9039741 -208997417 - THE1B LTR MaLR 0 364 1 309 179 0 0 chr3 9039741 9039761 -208997397 + (TG)n Simple_repeat Simple_repeat 49 68 0 247 281 0 0 chr3 9039825 9039882 -208997276 - MIR3 SINE MIR -50 158 102 771 312 0 14 chr3 9041259 9041480 -208995678 + MIR SINE MIR 45 262 0 21 57 0 0 chr3 9041911 9041946 -208995212 + AT_rich Low_complexity Low_complexity 1 35 0 2074 150 14 6 chr3 9044471 9044830 -208992328 - L1MA5 LINE L1 -478 5822 5461 2314 171 18 13 chr3 9044834 9045290 -208991868 + L1MA5 LINE L1 5843 6300 0 1004 322 29 17 chr3 9045476 9045978 -208991180 + MLT1H LTR MaLR 1 549 0 3841 175 4 4 chr3 9046383 9047085 -208990073 + L1MB1 LINE L1 5479 6180 -9 869 179 104 112 chr3 9047148 9047311 -208989847 - MER2 DNA MER2_type -1 344 181 2228 133 128 8 chr3 9047311 9047693 -208989465 - MSTA LTR MaLR 0 428 1 869 179 104 112 chr3 9047693 9047876 -208989282 - MER2 DNA MER2_type -164 181 1 195 311 14 0 chr3 9047906 9047980 -208989178 - MIR3 SINE MIR -12 196 122 223 308 0 15 chr3 9048349 9048414 -208988744 + L3b LINE CR1 1206 1269 -314 333 305 178 5 chr3 9050389 9050586 -208986572 + MIR SINE MIR 29 259 -3 1611 186 21 0 chr3 9050642 9050922 -208986236 + AluJo SINE Alu 1 286 -26 243 0 0 0 chr3 9050922 9050949 -208986209 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 2331 106 0 0 chr3 9052283 9052595 -208984563 + AluSx SINE Alu 1 312 0 1939 130 0 23 chr3 9053231 9053531 -208983627 - MER4A LTR ERV1 0 664 372 586 133 0 10 chr3 9053584 9053682 -208983476 - MER4A LTR ERV1 -566 98 2 475 244 1 22 chr3 9054625 9054735 -208982423 + MLT1E LTR MaLR 58 163 -404 214 181 0 24 chr3 9054735 9054818 -208982340 + (TA)n Simple_repeat Simple_repeat 2 82 0 1746 224 38 33 chr3 9054842 9055235 -208981923 + MLT1E LTR MaLR 199 593 0 1803 131 60 0 chr3 9055432 9055721 -208981437 - AluSx SINE Alu 0 305 1 566 261 48 52 chr3 9056682 9056931 -208980227 + LTR16A1 LTR ERVL 209 456 -1 21 0 0 0 chr3 9057302 9057323 -208979835 + AT_rich Low_complexity Low_complexity 1 21 0 232 286 0 0 chr3 9057472 9057535 -208979623 + (CA)n Simple_repeat Simple_repeat 2 64 0 207 100 0 0 chr3 9058470 9058500 -208978658 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 764 160 8 8 chr3 9059248 9059379 -208977779 - FLAM_C SINE Alu 0 133 3 353 295 38 0 chr3 9060532 9060637 -208976521 - MIR SINE MIR -104 158 50 321 277 52 59 chr3 9061963 9062237 -208974921 + L1ME4a LINE L1 5634 5908 -213 2012 141 10 0 chr3 9062237 9062534 -208974624 + AluSx SINE Alu 1 300 -12 321 277 52 59 chr3 9062534 9062576 -208974582 + L1ME4a LINE L1 5908 5949 -172 3144 167 86 28 chr3 9062576 9063263 -208973895 - LTR8A LTR ERV1 0 727 1 321 277 52 59 chr3 9063263 9063367 -208973791 + L1ME4a LINE L1 5949 6052 -69 429 353 108 4 chr3 9063971 9064249 -208972909 + L2 LINE L2 211 517 -2797 615 340 199 16 chr3 9064343 9065116 -208972042 + L2 LINE L2 982 1896 -1418 36 77 0 0 chr3 9065487 9065565 -208971593 + AT_rich Low_complexity Low_complexity 1 78 0 415 175 0 19 chr3 9065754 9065857 -208971301 + CT-rich Low_complexity Low_complexity 2 102 0 2448 63 0 0 chr3 9066369 9066671 -208970487 + AluY SINE Alu 1 302 -9 2287 83 0 13 chr3 9067066 9067366 -208969792 + AluSq SINE Alu 1 296 -17 220 211 42 28 chr3 9068732 9068803 -208968355 + (CAGAGA)n Simple_repeat Simple_repeat 4 75 0 23 33 0 0 chr3 9068961 9068991 -208968167 + AT_rich Low_complexity Low_complexity 1 30 0 311 313 99 15 chr3 9069285 9069416 -208967742 - MER5A DNA MER1_type -1 188 47 280 283 132 9 chr3 9069330 9069436 -208967722 + MER5A DNA MER1_type 68 186 -3 * 361 302 35 35 chr3 9069466 9069582 -208967576 + MIR SINE MIR 30 145 -63 471 143 36 0 chr3 9069590 9069674 -208967484 + L1MA5 LINE L1 6209 6295 -5 31 58 0 0 chr3 9069794 9069846 -208967312 + AT_rich Low_complexity Low_complexity 1 52 0 1912 178 3 23 chr3 9071313 9071667 -208965491 + MER7A DNA MER2_type 2 346 0 21 57 0 0 chr3 9071798 9071833 -208965325 + AT_rich Low_complexity Low_complexity 1 35 0 5530 166 26 24 chr3 9072143 9073034 -208964124 + L1MA6 LINE L1 4422 5310 -990 1952 131 40 0 chr3 9073034 9073332 -208963826 + AluSx SINE Alu 1 310 -2 5530 166 26 24 chr3 9073332 9074115 -208963043 + L1MA6 LINE L1 5310 6090 -210 2156 103 7 3 chr3 9074115 9074406 -208962752 + AluSx SINE Alu 1 292 -20 231 114 0 0 chr3 9074406 9074441 -208962717 + (TA)n Simple_repeat Simple_repeat 2 36 0 5530 166 26 24 chr3 9074441 9074620 -208962538 + L1MA6 LINE L1 6089 6294 -6 771 314 89 14 chr3 9074635 9075119 -208962039 + HAL1b LINE L1 305 824 -524 251 324 57 27 chr3 9075604 9076082 -208961076 + L1MC/D LINE L1 4168 4659 -1487 316 290 41 14 chr3 9076189 9076334 -208960824 + L1MC/D LINE L1 4804 4952 -1194 301 244 67 110 chr3 9076548 9076757 -208960401 + L1MC/D LINE L1 5259 5458 -2350 329 306 57 78 chr3 9076768 9077049 -208960109 + L1MC/D LINE L1 5509 5783 -2025 419 264 183 10 chr3 9078177 9078381 -208958777 + MIR SINE MIR 11 248 -14 198 0 0 0 chr3 9078400 9078422 -208958736 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2939 83 8 0 chr3 9078422 9078819 -208958339 - L1PA10 LINE L1 -20 6148 5749 219 69 0 0 chr3 9080496 9080525 -208956633 + (A)n Simple_repeat Simple_repeat 1 29 0 405 293 20 7 chr3 9080554 9080701 -208956457 - MER113 DNA MER1_type? -4 517 369 1114 66 7 0 chr3 9080703 9080855 -208956303 + L1PA13 LINE L1 6011 6163 0 481 301 71 0 chr3 9080858 9081054 -208956104 - MER63A DNA MER1_type 0 210 1 41479 40 23 1 chr3 9081295 9087257 -208949901 - L1PA3 LINE L1 0 6155 64 21 0 0 0 chr3 9087295 9087316 -208949842 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr3 9088833 9088858 -208948300 + (GA)n Simple_repeat Simple_repeat 2 26 0 379 292 50 8 chr3 9088970 9089090 -208948068 - MIR SINE MIR -57 151 27 273 330 0 0 chr3 9091323 9091417 -208945741 - MIR SINE MIR 0 262 169 1069 187 38 14 chr3 9092003 9092212 -208944946 - MER20 DNA MER1_type 0 219 6 402 266 21 63 chr3 9092327 9092470 -208944688 - MER5A DNA MER1_type 0 189 53 246 116 0 0 chr3 9092470 9092513 -208944645 + (T)n Simple_repeat Simple_repeat 1 43 0 2458 60 0 0 chr3 9092720 9093022 -208944136 - AluY SINE Alu -9 302 1 1405 111 0 44 chr3 9093298 9093523 -208943635 - L1PA16 LINE L1 -2 6164 5950 230 277 60 60 chr3 9095447 9095482 -208941676 + L1ME4a LINE L1 5955 5989 -132 2134 126 7 3 chr3 9095482 9095792 -208941366 + AluSx SINE Alu 2 312 0 230 277 60 60 chr3 9095792 9095922 -208941236 + L1ME4a LINE L1 5988 6120 -1 745 289 82 40 chr3 9096199 9096818 -208940340 - L2 LINE L2 -39 3274 2630 536 211 80 44 chr3 9096841 9097041 -208940117 + MER58 DNA MER1_type 1 2420 0 813 253 39 52 chr3 9097130 9097438 -208939720 - L2 LINE L2 -710 2604 2301 188 167 0 19 chr3 9097537 9097591 -208939567 + (TAA)n Simple_repeat Simple_repeat 3 55 0 944 265 89 29 chr3 9097649 9098030 -208939128 + LTR16B LTR ERVL 27 430 -34 271 301 11 32 chr3 9098090 9098183 -208938975 - MIR SINE MIR -70 192 102 933 213 32 19 chr3 9098324 9098540 -208938618 + MER20 DNA MER1_type 1 219 0 21 36 0 0 chr3 9099310 9099338 -208937820 + AT_rich Low_complexity Low_complexity 1 28 0 495 252 99 0 chr3 9100141 9100272 -208936886 - MIR SINE MIR -87 175 32 212 376 0 12 chr3 9100458 9100543 -208936615 + MIR3 SINE MIR 94 177 -31 804 139 115 171 chr3 9100575 9100862 -208936296 + AluJb SINE Alu 42 312 0 1275 97 20 5 chr3 9100924 9101120 -208936038 - L1MA3 LINE L1 0 6305 6107 2297 147 16 8 chr3 9101725 9102113 -208935045 + L1MC1 LINE L1 5943 6333 0 33 0 0 0 chr3 9104539 9104572 -208932586 + AT_rich Low_complexity Low_complexity 1 33 0 383 231 78 111 chr3 9104603 9104846 -208932312 - MLT1K LTR MaLR 0 588 354 4347 188 36 4 chr3 9104933 9105833 -208931325 - L1MC2 LINE L1 -9 6335 5408 32 0 0 0 chr3 9108696 9108728 -208928430 + AT_rich Low_complexity Low_complexity 1 32 0 1962 192 31 17 chr3 9109493 9109915 -208927243 + MSTA LTR MaLR 1 428 0 273 335 115 0 chr3 9109973 9110191 -208926967 + L1ME LINE L1 5549 5791 -330 3721 151 55 8 chr3 9110330 9111082 -208926076 - L1MA4 LINE L1 -323 5977 5190 599 245 45 39 chr3 9111097 9111153 -208926005 - MLT1H LTR MaLR -379 170 116 2029 104 21 10 chr3 9111153 9111441 -208925717 + AluSq SINE Alu 8 298 -15 599 245 45 39 chr3 9111441 9111539 -208925619 - MLT1H LTR MaLR -433 116 15 225 225 0 0 chr3 9112049 9112089 -208925069 + MIR SINE MIR 82 121 -87 24 32 0 0 chr3 9112472 9112503 -208924655 + AT_rich Low_complexity Low_complexity 1 31 0 1398 124 0 5 chr3 9113006 9113207 -208923951 - AluSc SINE Alu 0 309 110 24 0 0 0 chr3 9113467 9113491 -208923667 + AT_rich Low_complexity Low_complexity 1 24 0 752 355 60 48 chr3 9113952 9114839 -208922319 - L2 LINE L2 -219 3053 2158 386 335 22 54 chr3 9114839 9115024 -208922134 - MER5A DNA MER1_type -1 188 10 397 338 87 27 chr3 9115032 9115482 -208921676 - L2 LINE L2 -1158 2156 1680 2125 241 27 46 chr3 9115541 9115610 -208921548 - L1MB7 LINE L1 0 6184 6115 1943 75 113 0 chr3 9115610 9115876 -208921282 - AluSg SINE Alu -13 297 2 2125 241 27 46 chr3 9115876 9116462 -208920696 - L1MB7 LINE L1 -69 6115 5541 384 256 65 60 chr3 9116909 9117077 -208920081 + MIR SINE MIR 80 248 -14 415 285 85 60 chr3 9118959 9119159 -208917999 - MIR SINE MIR -1 261 57 1769 137 22 4 chr3 9119258 9119536 -208917622 + AluSx SINE Alu 15 297 -15 21 0 0 0 chr3 9119586 9119607 -208917551 + AT_rich Low_complexity Low_complexity 1 21 0 2152 106 0 48 chr3 9120216 9120528 -208916630 - AluSq SINE Alu -16 297 1 453 282 60 46 chr3 9122070 9122239 -208914919 + MLT1J2 LTR MaLR 58 234 -212 663 123 123 0 chr3 9122239 9122369 -208914789 - L1PB2 LINE L1 0 6151 6006 453 282 60 46 chr3 9122369 9122454 -208914704 + MLT1J2 LTR MaLR 234 316 -130 194 304 72 0 chr3 9122596 9122665 -208914493 - L2 LINE L2 -13 3259 3186 2092 138 3 3 chr3 9123067 9123371 -208913787 + AluSx SINE Alu 1 304 -8 245 271 43 57 chr3 9123502 9123642 -208913516 - L1ME3A LINE L1 -6 6164 6027 398 231 133 6 chr3 9123775 9123948 -208913210 - L1ME3A LINE L1 -232 5938 5744 351 284 134 83 chr3 9124438 9124823 -208912335 + L2 LINE L2 2906 3312 -1 282 119 30 15 chr3 9124830 9124897 -208912261 + GA-rich Low_complexity Low_complexity 3 70 0 329 291 27 27 chr3 9126784 9126894 -208910264 - MIR3 SINE MIR -1 207 98 217 235 76 101 chr3 9126912 9127031 -208910127 - L2 LINE L2 0 3313 3198 495 342 82 0 chr3 9127101 9127332 -208909826 + MIR SINE MIR 1 250 -12 288 153 124 146 chr3 9127562 9127699 -208909459 + MER91B DNA MER1_type 31 164 -26 1037 274 125 63 chr3 9127817 9128328 -208908830 - MLT1G1 LTR MaLR -5 590 48 205 299 0 15 chr3 9128374 9128441 -208908717 + L2 LINE L2 3248 3313 0 1431 183 70 8 chr3 9129832 9130089 -208907069 - AluJb SINE Alu -39 273 1 2157 124 0 3 chr3 9130671 9130969 -208906189 - AluSg SINE Alu -13 297 1 210 303 13 13 chr3 9131024 9131100 -208906058 + L2 LINE L2 3188 3263 -9 2429 154 2 28 chr3 9131179 9131602 -208905556 - MSTB1 LTR MaLR -20 412 1 252 0 0 0 chr3 9132866 9132894 -208904264 + (A)n Simple_repeat Simple_repeat 1 28 0 1495 144 0 132 chr3 9134244 9134571 -208902587 + AluJo SINE Alu 11 294 -18 537 291 119 61 chr3 9134575 9134624 -208902534 - MLT1I LTR MaLR -45 364 319 2216 129 3 0 chr3 9134624 9134935 -208902223 - AluSx SINE Alu 0 312 1 537 291 119 61 chr3 9134935 9135229 -208901929 - MLT1I LTR MaLR -90 319 1 2053 188 62 7 chr3 9135251 9135655 -208901503 - MSTB LTR MaLR 0 426 1 298 311 39 10 chr3 9136123 9136226 -208900932 + L2 LINE L2 3196 3301 -12 360 125 0 0 chr3 9137881 9137945 -208899213 + (CA)n Simple_repeat Simple_repeat 2 65 0 291 200 0 0 chr3 9138160 9138215 -208898943 - L2 LINE L2 0 3313 3259 204 309 11 32 chr3 9138557 9138651 -208898507 - MIR3 SINE MIR -7 201 110 449 70 0 14 chr3 9139720 9139791 -208897367 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 2184 126 0 3 chr3 9139925 9140226 -208896932 - AluSx SINE Alu -12 300 1 22 70 0 0 chr3 9140272 9140315 -208896843 + AT_rich Low_complexity Low_complexity 1 43 0 385 360 29 6 chr3 9140468 9140643 -208896515 + MER5A DNA MER1_type 8 186 -3 278 271 90 71 chr3 9140749 9140904 -208896254 + MIR SINE MIR 41 198 -64 650 134 11 213 chr3 9141955 9142232 -208894926 - L1MA9 LINE L1 0 6312 6092 2126 104 3 3 chr3 9143914 9144201 -208892957 + AluSc SINE Alu 1 287 -22 367 218 0 32 chr3 9144934 9145058 -208892100 + CT-rich Low_complexity Low_complexity 1 120 0 5831 14 0 0 chr3 9145948 9146648 -208890510 - L1PA2 LINE L1 -202 5953 5254 1836 23 0 0 chr3 9146656 9146870 -208890288 + L1PA2 LINE L1 5942 6155 0 2118 129 3 3 chr3 9147267 9147576 -208889582 + AluSx SINE Alu 1 309 -3 186 310 17 17 chr3 9149838 9149896 -208887262 - L2 LINE L2 -26 3246 3189 189 296 19 0 chr3 9150803 9150857 -208886301 + L2 LINE L2 3210 3264 -8 36 62 0 0 chr3 9150907 9150971 -208886187 + AT_rich Low_complexity Low_complexity 1 64 0 289 281 31 31 chr3 9150981 9151077 -208886081 - MIR3 SINE MIR -26 182 87 1777 150 0 11 chr3 9151228 9151502 -208885656 + AluJb SINE Alu 1 271 -41 291 182 23 11 chr3 9151508 9151596 -208885562 + GA-rich Low_complexity Low_complexity 3 91 0 296 303 33 40 chr3 9151658 9151810 -208885348 - L2 LINE L2 -1034 2280 2130 1990 166 63 19 chr3 9151836 9152246 -208884912 - MSTC LTR MaLR 0 428 1 200 188 0 0 chr3 9152838 9152870 -208884288 + polypurine Low_complexity Low_complexity 4 35 0 1942 127 0 38 chr3 9152878 9153244 -208883914 + AluSx SINE Alu 11 365 0 806 288 82 63 chr3 9153352 9153469 -208883689 - MER34 LTR ERV1 0 542 429 1914 173 0 10 chr3 9153469 9153775 -208883383 - AluJb SINE Alu -7 305 3 806 288 82 63 chr3 9153775 9154184 -208882974 - MER34 LTR ERV1 -113 429 6 1264 195 62 94 chr3 9154378 9154603 -208882555 - MER34-int LTR ERV1 -165 6040 5809 2138 199 36 2 chr3 9154603 9155021 -208882137 - MSTB1 LTR MaLR 0 432 1 1264 195 62 94 chr3 9155021 9155413 -208881745 - MER34-int LTR ERV1 -396 5809 4190 1505 181 50 81 chr3 9155427 9155490 -208881668 - MER31-int LTR ERV1 -3613 1323 1260 2241 135 10 39 chr3 9155490 9155874 -208881284 + MER83C LTR ERV1 1 373 0 1505 181 50 81 chr3 9155874 9156329 -208880829 - MER31-int LTR ERV1 -3676 1260 821 2387 53 0 3 chr3 9156543 9156827 -208880331 + AluY SINE Alu 13 295 -16 207 0 0 0 chr3 9157374 9157397 -208879761 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1821 135 7 7 chr3 9157398 9157672 -208879486 - AluSx SINE Alu -36 276 3 545 264 51 43 chr3 9157754 9157954 -208879204 - MER34 LTR ERV1 0 542 338 2823 177 91 56 chr3 9157954 9158656 -208878502 + LTR8A LTR ERV1 1 727 0 545 264 51 43 chr3 9158656 9158690 -208878468 - MER34 LTR ERV1 -204 338 306 447 241 0 9 chr3 9158785 9158897 -208878261 - MER34 LTR ERV1 -431 111 1 1591 220 58 114 chr3 9159637 9160427 -208876731 + LTR1B LTR ERV1 1 746 -80 23 54 0 0 chr3 9160804 9160841 -208876317 + AT_rich Low_complexity Low_complexity 1 37 0 650 254 78 15 chr3 9161215 9161420 -208875738 - MER20 DNA MER1_type 0 219 2 510 302 15 25 chr3 9162271 9162473 -208874685 + MLT1K LTR MaLR 380 579 -9 2384 107 0 3 chr3 9162796 9163105 -208874053 - AluSc SINE Alu -1 308 1 300 361 106 18 chr3 9163108 9163335 -208873823 - MLT1K LTR MaLR -158 430 184 409 253 140 27 chr3 9163715 9163901 -208873257 - MIR SINE MIR -13 249 43 251 194 113 0 chr3 9163977 9164039 -208873119 - MER94 DNA DNA -65 69 1 2458 184 38 35 chr3 9164105 9164439 -208872719 - L1MC2 LINE L1 -11 7770 7439 1922 160 0 26 chr3 9164439 9164752 -208872406 - AluSx SINE Alu -7 305 1 2458 184 38 35 chr3 9164752 9165007 -208872151 - L1MC2 LINE L1 -342 7439 6137 425 275 8 8 chr3 9165028 9165159 -208871999 - L1ME2 LINE L1 -12 6152 6022 715 184 0 27 chr3 9165441 9165588 -208871570 + FLAM_C SINE Alu 1 143 0 2128 234 74 34 chr3 9166217 9166991 -208870167 - L1ME1 LINE L1 -4 6231 5427 515 182 0 0 chr3 9167142 9167230 -208869928 + AluJ/FLAM SINE Alu 1 88 -224 27 0 0 0 chr3 9167296 9167323 -208869835 + AT_rich Low_complexity Low_complexity 1 27 0 661 231 30 10 chr3 9167327 9167526 -208869632 - L1MB8 LINE L1 -1 6177 5975 799 281 90 19 chr3 9167614 9167710 -208869448 - L1ME1 LINE L1 -2701 3514 3426 1697 180 7 3 chr3 9167710 9168004 -208869154 - AluSx SINE Alu -14 298 4 799 281 90 19 chr3 9168004 9168604 -208868554 - L1ME1 LINE L1 -2789 3426 2768 480 222 11 43 chr3 9168602 9168787 -208868371 - L1ME1 LINE L1 -5265 1131 953 * 239 133 67 0 chr3 9168811 9168856 -208868302 - MLT1E2 LTR MaLR -42 584 537 621 210 122 39 chr3 9168871 9169052 -208868106 - MLT1E2 LTR MaLR -369 257 62 434 322 95 57 chr3 9169147 9169923 -208867235 - L1ME1 LINE L1 -5554 842 37 251 289 12 0 chr3 9170325 9170408 -208866750 + MARNA DNA Mariner 448 531 -55 627 272 38 22 chr3 9170968 9171152 -208866006 + MIR SINE MIR 8 194 -68 187 382 11 0 chr3 9171158 9171247 -208865911 + MIR SINE MIR 172 261 -1 285 360 0 9 chr3 9171265 9171379 -208865779 + MIR SINE MIR 136 248 -14 789 95 0 0 chr3 9171615 9171731 -208865427 + (TCCCC)n Simple_repeat Simple_repeat 4 119 0 988 183 17 6 chr3 9171731 9171906 -208865252 - AluJb SINE Alu -20 292 116 366 330 98 71 chr3 9172237 9172409 -208864749 - MLT1K LTR MaLR -34 554 388 2295 115 0 0 chr3 9172409 9172705 -208864453 - AluSx SINE Alu -12 300 5 366 330 98 71 chr3 9172705 9173041 -208864117 - MLT1K LTR MaLR -200 388 32 214 345 0 35 chr3 9173650 9173737 -208863421 + MIR SINE MIR 104 187 -75 34 42 0 0 chr3 9173816 9173864 -208863294 + AT_rich Low_complexity Low_complexity 1 48 0 251 282 12 0 chr3 9173881 9173966 -208863192 - MLT1L LTR MaLR -13 602 517 280 333 89 37 chr3 9175280 9175415 -208861743 - L2 LINE L2 -6 3266 3125 299 301 63 63 chr3 9175927 9176133 -208861025 - MLT1K LTR MaLR -90 498 293 346 290 21 21 chr3 9176311 9176404 -208860754 + MER91B DNA MER1_type 97 189 -1 297 339 17 0 chr3 9176424 9176542 -208860616 - MLT1K LTR MaLR -319 269 150 252 0 0 0 chr3 9176599 9176627 -208860531 + (A)n Simple_repeat Simple_repeat 1 28 0 183 100 0 0 chr3 9176652 9176682 -208860476 + (CAA)n Simple_repeat Simple_repeat 2 31 0 404 319 8 0 chr3 9176822 9176941 -208860217 - MIR3 SINE MIR -23 185 66 181 161 0 54 chr3 9178181 9178237 -208858921 + GA-rich Low_complexity Low_complexity 1 53 0 277 318 16 8 chr3 9180227 9180353 -208856805 + CT-rich Low_complexity Low_complexity 2 128 0 353 310 0 0 chr3 9183418 9183505 -208853653 + MIR SINE MIR 50 136 -72 388 347 43 20 chr3 9183992 9184292 -208852866 + MLT1K LTR MaLR 200 506 -82 508 270 157 22 chr3 9185208 9185438 -208851720 - MIR SINE MIR 0 262 2 605 254 42 31 chr3 9186335 9186528 -208850630 + MIR SINE MIR 12 206 -56 285 29 0 0 chr3 9186734 9186768 -208850390 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 248 174 0 14 chr3 9186769 9186838 -208850320 + GA-rich Low_complexity Low_complexity 1 68 0 210 288 76 68 chr3 9186955 9187073 -208850085 + MIR SINE MIR 16 134 -128 207 300 125 0 chr3 9187087 9187167 -208849991 - L2 LINE L2 -15 3298 3209 266 247 41 0 chr3 9187167 9187240 -208849918 + CT-rich Low_complexity Low_complexity 4 79 0 1431 271 106 37 chr3 9187244 9188111 -208849047 - L2 LINE L2 -94 3219 2295 197 288 0 0 chr3 9188121 9188180 -208848978 + MIR SINE MIR 134 192 -70 24 32 0 0 chr3 9188489 9188520 -208848638 + AT_rich Low_complexity Low_complexity 1 31 0 223 284 0 0 chr3 9189512 9189579 -208847579 + CT-rich Low_complexity Low_complexity 1 67 0 4967 44 7 2 chr3 9189633 9190247 -208846911 - L1PA7 LINE L1 -2 6152 5536 1987 107 10 17 chr3 9190247 9190538 -208846620 - AluSx SINE Alu -23 289 1 728 280 58 4 chr3 9190564 9190789 -208846369 + MIR SINE MIR 1 237 -25 630 292 67 17 chr3 9191150 9191390 -208845768 + MIR SINE MIR 5 256 -6 448 269 126 40 chr3 9191637 9191860 -208845298 - MIR SINE MIR -16 246 5 2354 109 22 11 chr3 9192448 9192805 -208844353 + THE1B LTR MaLR 1 361 -3 22 35 0 0 chr3 9193013 9193042 -208844116 + AT_rich Low_complexity Low_complexity 1 29 0 2158 122 0 0 chr3 9193151 9193447 -208843711 + AluSx SINE Alu 1 296 -16 2264 116 0 0 chr3 9193765 9194067 -208843091 - AluSx SINE Alu -10 302 1 234 172 103 17 chr3 9194270 9194328 -208842830 - L2 LINE L2 0 3313 3251 396 0 0 0 chr3 9194975 9195019 -208842139 + (CA)n Simple_repeat Simple_repeat 1 44 0 369 43 0 0 chr3 9195535 9195582 -208841576 + (TG)n Simple_repeat Simple_repeat 2 48 0 249 340 156 21 chr3 9195808 9195949 -208841209 - MER5A DNA MER1_type 0 189 30 735 211 149 0 chr3 9195953 9196114 -208841044 - MER5A DNA MER1_type 0 189 5 449 290 158 6 chr3 9196248 9196431 -208840727 - MIR SINE MIR -32 230 20 592 169 128 12 chr3 9196442 9196614 -208840544 - L1MA7 LINE L1 -2 6289 6098 196 267 0 33 chr3 9196681 9196741 -208840417 - L2 LINE L2 -218 3054 2997 213 180 0 0 chr3 9248270 9248320 -208788838 + GA-rich Low_complexity Low_complexity 3 52 0 468 118 13 0 chr3 9248633 9248709 -208788449 - MADE1 DNA Mariner 0 80 4 734 252 57 71 chr3 9249983 9250455 -208786703 - MLT1C LTR MaLR 0 626 6 300 111 0 0 chr3 9251029 9251083 -208786075 + (CA)n Simple_repeat Simple_repeat 2 55 0 239 275 47 19 chr3 9252257 9252450 -208784708 - MER102b DNA MER1_type 0 341 80 260 157 8 164 chr3 9252762 9252896 -208784262 - MER112 DNA MER1_type -103 157 45 242 333 51 51 chr3 9252935 9253052 -208784106 - MIR3 SINE MIR -48 160 44 2984 310 76 32 chr3 9253155 9254923 -208782235 + L2 LINE L2 1307 3164 -149 234 189 0 84 chr3 9254924 9255019 -208782139 + L1MC4 LINE L1 6609 6695 -1347 291 291 60 82 chr3 9255021 9255155 -208782003 + L2 LINE L2 3182 3312 -1 309 135 0 0 chr3 9255191 9255243 -208781915 + (TAA)n Simple_repeat Simple_repeat 3 54 0 259 359 90 12 chr3 9255297 9255464 -208781694 - MIR SINE MIR -61 201 22 367 340 102 12 chr3 9255499 9255831 -208781327 + LTR16A LTR ERVL 1 362 -88 559 289 17 8 chr3 9256830 9257065 -208780093 + L1MC4 LINE L1 7665 7901 -141 235 204 0 0 chr3 9257066 9257120 -208780038 + L1MC4 LINE L1 7986 8039 -3 23 0 0 0 chr3 9257237 9257260 -208779898 + AT_rich Low_complexity Low_complexity 1 23 0 659 326 83 42 chr3 9257261 9257419 -208779739 + L2 LINE L2 2453 2603 -711 2383 42 0 11 chr3 9257419 9257736 -208779422 - AluY SINE Alu 0 314 1 659 326 83 42 chr3 9257736 9257913 -208779245 + L2 LINE L2 2603 2803 -511 23 54 0 0 chr3 9257919 9257956 -208779202 + AT_rich Low_complexity Low_complexity 1 37 0 250 185 0 0 chr3 9257991 9258045 -208779113 - L1MC4 LINE L1 -3 8039 7986 310 294 54 76 chr3 9258914 9259116 -208778042 + MIR SINE MIR 5 206 -56 535 262 0 14 chr3 9259295 9259440 -208777718 + MER63 DNA MER1_type 5 773 -289 375 248 20 0 chr3 9259457 9259558 -208777600 + Charlie8 DNA MER1_type 88 190 -2227 283 272 37 0 chr3 9259879 9259960 -208777198 - MIR SINE MIR -49 213 130 1401 211 82 39 chr3 9259971 9260411 -208776747 + MLT1C LTR MaLR 1 459 -8 220 167 0 0 chr3 9260576 9260618 -208776540 - MER5B DNA MER1_type -136 42 1 1769 173 3 22 chr3 9260939 9261257 -208775901 + AluJo SINE Alu 1 312 0 246 83 0 0 chr3 9261346 9261382 -208775776 + Alu SINE Alu 46 81 -94 438 298 61 33 chr3 9261445 9261626 -208775532 - MIR SINE MIR -65 197 12 195 379 35 0 chr3 9262321 9262408 -208774750 - L3 LINE CR1 -20 1557 1468 1968 138 0 52 chr3 9262799 9263124 -208774034 + AluJb SINE Alu 1 308 -4 1064 190 23 31 chr3 9264011 9264269 -208772889 + MLT1A1 LTR MaLR 110 365 0 403 211 65 16 chr3 9264642 9264765 -208772393 - MER104 DNA Tc2 -12 168 40 608 197 142 0 chr3 9264826 9264953 -208772205 - FRAM SINE Alu -30 146 2 423 250 62 0 chr3 9265680 9265792 -208771366 + MIR SINE MIR 2 120 -142 190 336 160 8 chr3 9266139 9266258 -208770900 - L2 LINE L2 0 3272 3136 2356 320 127 25 chr3 9266369 9268021 -208769137 - L2 LINE L2 -1449 1865 47 24 0 0 0 chr3 9269087 9269111 -208768047 + AT_rich Low_complexity Low_complexity 1 24 0 446 284 57 7 chr3 9269200 9269341 -208767817 + MIR SINE MIR 97 244 -18 911 232 93 87 chr3 9269867 9270337 -208766821 + L1ME2 LINE L1 5617 6262 -72 198 103 0 0 chr3 9270337 9270366 -208766792 + (CA)n Simple_repeat Simple_repeat 2 30 0 911 232 93 87 chr3 9270366 9270437 -208766721 + L1ME2 LINE L1 6262 6331 -3 191 365 24 0 chr3 9270584 9270669 -208766489 + L2 LINE L2 3139 3225 -47 1885 171 3 0 chr3 9272578 9272871 -208764287 - AluSg SINE Alu -16 294 1 2117 111 7 3 chr3 9272882 9273180 -208763978 - AluSx SINE Alu -13 299 1 186 43 0 0 chr3 9273242 9273265 -208763893 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 239 250 65 28 chr3 9273391 9273499 -208763659 - MIR SINE MIR -38 224 113 412 308 151 0 chr3 9273600 9273785 -208763373 - MIR SINE MIR 0 262 50 1065 144 18 1 chr3 9274045 9274295 -208762863 + L1MA4A LINE L1 6014 6247 -56 288 250 0 24 chr3 9274495 9274579 -208762579 - MIR SINE MIR -15 247 166 425 350 48 27 chr3 9275094 9275425 -208761733 + MLT1J2 LTR MaLR 113 450 0 1886 262 74 15 chr3 9275646 9275702 -208761456 + L1ME1 LINE L1 45 96 -6300 188 0 0 69 chr3 9275702 9275731 -208761427 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1886 262 74 15 chr3 9275731 9276338 -208760820 + L1ME1 LINE L1 96 747 -5649 340 113 0 0 chr3 9276344 9276406 -208760752 + L1ME1 LINE L1 2192 2253 -4143 2197 219 139 16 chr3 9276412 9277244 -208759914 + L1ME1 LINE L1 2384 3318 -2897 * 41320 44 5 2 chr3 9277243 9283379 -208753779 + L1PA4 LINE L1 1 6155 0 4757 247 51 22 chr3 9283358 9285934 -208751224 + L1ME1 LINE L1 3208 5885 -281 * 415 200 36 9 chr3 9286045 9286155 -208751003 + L1MA10 LINE L1 6219 6331 -3 225 269 58 39 chr3 9286155 9286259 -208750899 - MIR SINE MIR -49 213 108 269 246 0 0 chr3 9286650 9286719 -208750439 + (TGAA)n Simple_repeat Simple_repeat 4 72 0 2141 103 0 0 chr3 9288044 9288326 -208748832 + AluSc SINE Alu 1 282 -27 24 32 0 0 chr3 9288327 9288358 -208748800 + AT_rich Low_complexity Low_complexity 1 31 0 184 358 105 0 chr3 9289249 9289344 -208747814 + MIR3 SINE MIR 97 201 -7 479 332 55 14 chr3 9290360 9290580 -208746578 + MIR SINE MIR 34 262 0 344 223 28 137 chr3 9291484 9291695 -208745463 + L1ME4a LINE L1 5638 5825 -296 1920 233 58 109 chr3 9291789 9292425 -208744733 - LTR41 LTR ERVL -8 765 177 2030 108 0 51 chr3 9292425 9292776 -208744382 + AluSx SINE Alu 1 312 0 1920 233 58 109 chr3 9292776 9292945 -208744213 - LTR41 LTR ERVL -596 177 1 284 339 0 0 chr3 9293383 9293498 -208743660 + MER103 DNA DNA 6 120 -46 209 310 157 34 chr3 9293553 9293821 -208743337 + L2 LINE L2 2384 2684 -630 2236 119 0 0 chr3 9295379 9295690 -208741468 + AluSx SINE Alu 1 311 -1 212 300 0 0 chr3 9296513 9296563 -208740595 + L2 LINE L2 3182 3231 -82 341 302 40 16 chr3 9296603 9296729 -208740429 - L2 LINE L2 -27 3286 3158 269 294 25 68 chr3 9297107 9297270 -208739888 - MER117 DNA MER1_type -41 156 1 386 337 61 6 chr3 9298185 9298366 -208738792 - MIR SINE MIR -40 222 32 26 30 0 0 chr3 9299924 9299957 -208737201 + AT_rich Low_complexity Low_complexity 1 33 0 655 284 60 18 chr3 9300441 9300772 -208736386 + L1ME4a LINE L1 5620 5964 -157 752 18 9 28 chr3 9300895 9301004 -208736154 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 2048 127 0 0 chr3 9301012 9301288 -208735870 - AluSx SINE Alu -36 276 1 332 283 38 47 chr3 9301489 9301701 -208735457 + L1ME LINE L1 5617 5826 -295 21 57 0 0 chr3 9302268 9302303 -208734855 + AT_rich Low_complexity Low_complexity 1 35 0 826 337 78 20 chr3 9302395 9302885 -208734273 + L3 LINE CR1 1057 1574 -3 237 98 0 0 chr3 9303083 9303124 -208734034 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 713 254 0 44 chr3 9303876 9304057 -208733101 - MER5B DNA MER1_type -5 173 1 284 339 34 17 chr3 9304322 9304440 -208732718 - MIR SINE MIR -65 143 34 191 194 0 0 chr3 9305061 9305092 -208732066 - MIR SINE MIR -58 150 120 2054 142 3 0 chr3 9305119 9305430 -208731728 + AluSx SINE Alu 1 312 0 199 262 98 0 chr3 9306259 9306320 -208730838 + MIR SINE MIR 80 146 -116 1923 131 7 10 chr3 9307863 9308161 -208728997 - AluSx SINE Alu -15 297 1 24 32 0 0 chr3 9308642 9308673 -208728485 + AT_rich Low_complexity Low_complexity 1 31 0 1952 116 0 31 chr3 9308926 9309248 -208727910 + AluSx SINE Alu 1 313 0 262 250 89 27 chr3 9309498 9309610 -208727548 - MIR SINE MIR -60 202 84 264 305 0 0 chr3 9309788 9309847 -208727311 + L2 LINE L2 3214 3272 0 419 248 17 26 chr3 9309860 9309977 -208727181 - MIR SINE MIR -102 160 45 240 284 30 0 chr3 9310220 9310287 -208726871 + MIR SINE MIR 74 142 -66 604 262 107 5 chr3 9311202 9311389 -208725769 - MIR SINE MIR -1 261 56 1679 191 62 0 chr3 9311655 9311980 -208725178 + MLT1A1 LTR MaLR 1 345 -20 313 308 140 0 chr3 9312209 9312316 -208724842 + L2 LINE L2 3191 3312 -1 2180 101 3 0 chr3 9313733 9314021 -208723137 + AluSg SINE Alu 1 289 -21 268 378 61 6 chr3 9315813 9315993 -208721165 + L3 LINE CR1 1375 1564 -13 453 269 6 25 chr3 9316076 9316236 -208720922 - MER103 DNA DNA -2 164 8 220 299 13 0 chr3 9317133 9317210 -208719948 + L3b LINE CR1 1181 1258 -325 466 252 9 0 chr3 9317702 9317813 -208719345 - FLAM_A SINE Alu -15 127 16 401 298 29 41 chr3 9318014 9318185 -208718973 + MLT1J2 LTR MaLR 279 447 -3 261 363 44 0 chr3 9318883 9318996 -208718162 - L2 LINE L2 0 3272 3155 315 336 28 28 chr3 9319831 9319974 -208717184 + MIR3 SINE MIR 5 147 -61 215 350 48 10 chr3 9320855 9320958 -208716200 + MIR3 SINE MIR 101 207 -1 700 199 8 0 chr3 9321229 9321360 -208715798 + FLAM_C SINE Alu 1 132 -1 881 163 0 6 chr3 9321416 9321582 -208715576 + L1MA10 LINE L1 6167 6331 -3 21 0 0 0 chr3 9321593 9321614 -208715544 + AT_rich Low_complexity Low_complexity 1 21 0 340 275 169 38 chr3 9322300 9322460 -208714698 + MLT1A1 LTR MaLR 369 549 0 476 321 61 57 chr3 9322479 9323415 -208713743 + L1ME LINE L1 3803 4745 -1401 1366 227 14 7 chr3 9323415 9323710 -208713448 + AluJo SINE Alu 1 297 -15 476 321 61 57 chr3 9323710 9323807 -208713351 + L1ME LINE L1 4745 4840 -1306 511 298 94 12 chr3 9323952 9324123 -208713035 - MIR SINE MIR -67 195 11 529 315 91 20 chr3 9324419 9324914 -208712244 + L1ME LINE L1 5255 5784 -378 288 0 0 0 chr3 9325551 9325583 -208711575 + (TG)n Simple_repeat Simple_repeat 2 33 0 235 258 45 0 chr3 9326593 9326682 -208710476 + A-rich Low_complexity Low_complexity 4 96 0 2374 82 0 28 chr3 9326798 9327116 -208710042 - AluSc SINE Alu 0 309 1 208 360 0 20 chr3 9328516 9328616 -208708542 + MIR SINE MIR 45 142 -66 273 336 69 8 chr3 9329156 9329287 -208707871 + MIR SINE MIR 124 262 0 295 317 63 0 chr3 9329349 9329491 -208707667 - MIR SINE MIR -57 205 55 615 179 172 13 chr3 9329584 9329735 -208707423 - FRAM SINE Alu 0 176 2 694 312 24 20 chr3 9330293 9330540 -208706618 + LTR33 LTR ERVL 45 292 -229 299 258 281 6 chr3 9330805 9330983 -208706175 - MIR SINE MIR -2 260 34 788 209 70 0 chr3 9331014 9331186 -208705972 - MER5A DNA MER1_type -2 187 4 449 287 54 0 chr3 9332843 9332972 -208704186 + MIR SINE MIR 59 194 -68 336 200 0 0 chr3 9333821 9333901 -208703257 + (TA)n Simple_repeat Simple_repeat 2 81 0 223 338 188 6 chr3 9335244 9335404 -208701754 + MIR SINE MIR 64 252 -10 318 50 0 0 chr3 9335413 9335453 -208701705 + (CAT)n Simple_repeat Simple_repeat 2 41 0 351 276 24 8 chr3 9335919 9336042 -208701116 - LTR67 LTR ERVL -13 544 420 351 354 31 15 chr3 9336159 9336289 -208700869 - LTR67 LTR ERVL -316 241 110 33981 38 0 0 chr3 9336289 9341201 -208695957 + L1PA3 LINE L1 1239 6152 -3 294 258 89 57 chr3 9341486 9341610 -208695548 + MIR SINE MIR 91 218 -44 249 33 0 0 chr3 9341633 9341663 -208695495 + (TTA)n Simple_repeat Simple_repeat 1 30 0 183 371 21 67 chr3 9341703 9341897 -208695261 - MIR SINE MIR -30 232 48 1673 93 4 39 chr3 9341924 9342181 -208694977 - L1PA6 LINE L1 0 6154 5907 1181 161 55 0 chr3 9342217 9342306 -208694852 + L1MA9 LINE L1 6062 6145 -167 234 62 0 0 chr3 9342306 9342338 -208694820 + (CA)n Simple_repeat Simple_repeat 1 32 0 1181 161 55 0 chr3 9342338 9342484 -208694674 + L1MA9 LINE L1 6145 6310 -2 2542 198 2 10 chr3 9342841 9343331 -208693827 + MER66B LTR ERV1 1 486 0 2247 120 0 0 chr3 9343536 9343844 -208693314 + AluSg SINE Alu 1 308 -2 213 262 0 0 chr3 9343848 9343890 -208693268 - MIR SINE MIR -89 119 78 374 253 24 0 chr3 9344079 9344162 -208692996 - L3 LINE CR1 -100 1477 1393 35 78 0 0 chr3 9345096 9345173 -208691985 + AT_rich Low_complexity Low_complexity 1 77 0 477 296 132 38 chr3 9345195 9345742 -208691416 + L1ME4a LINE L1 5320 5917 -204 798 230 0 0 chr3 9345870 9346035 -208691123 - FRAM SINE Alu -12 164 1 297 0 0 0 chr3 9346479 9346512 -208690646 + (CA)n Simple_repeat Simple_repeat 2 34 0 1039 93 42 3 chr3 9346686 9346878 -208690280 - L1MC/D LINE L1 -738 5430 5254 3173 71 7 0 chr3 9346879 9347304 -208689854 + L1PA10 LINE L1 5741 6168 0 26 74 0 0 chr3 9347488 9347542 -208689616 + AT_rich Low_complexity Low_complexity 1 54 0 15280 209 24 18 chr3 9348793 9352730 -208684428 + L1PA15 LINE L1 2841 6799 -804 2105 126 3 0 chr3 9352730 9353024 -208684134 + AluSg SINE Alu 2 296 -14 15280 209 24 18 chr3 9353024 9353831 -208683327 + L1PA15 LINE L1 6799 7600 -3 32 43 0 0 chr3 9353855 9353901 -208683257 + AT_rich Low_complexity Low_complexity 1 46 0 386 286 57 65 chr3 9354826 9355071 -208682087 + MLT1L LTR MaLR 129 371 -244 409 129 0 0 chr3 9356097 9356167 -208680991 - L1PB3 LINE L1 -2 6152 6083 4309 138 6 6 chr3 9356398 9357071 -208680087 - L1PB3 LINE L1 -45 6109 5437 1490 214 20 23 chr3 9357064 9357456 -208679702 + L1P LINE L1 4958 5348 -798 * 574 131 0 0 chr3 9357457 9357541 -208679617 - AluS SINE Alu -228 84 1 506 338 46 9 chr3 9357803 9358022 -208679136 - MIR SINE MIR -27 235 9 189 0 0 0 chr3 9358277 9358298 -208678860 + (TG)n Simple_repeat Simple_repeat 2 22 0 358 265 29 37 chr3 9358977 9359113 -208678045 - MLT1K LTR MaLR -8 580 446 499 275 70 31 chr3 9359952 9360181 -208676977 - L2 LINE L2 -4 3309 3072 180 394 16 37 chr3 9360353 9360541 -208676617 + L2 LINE L2 2988 3171 -142 412 172 65 6 chr3 9360546 9360715 -208676443 + (TA)n Simple_repeat Simple_repeat 2 180 0 * 414 127 58 58 chr3 9360677 9360850 -208676308 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 430 287 31 8 chr3 9361039 9361168 -208675990 + L2 LINE L2 3173 3304 -9 201 328 172 40 chr3 9361198 9361372 -208675786 + MIR SINE MIR 4 200 -62 208 219 0 62 chr3 9361457 9361521 -208675637 - L2 LINE L2 0 3313 3254 21 36 0 0 chr3 9362465 9362493 -208674665 + AT_rich Low_complexity Low_complexity 1 28 0 305 24 24 0 chr3 9362493 9362535 -208674623 + (TC)n Simple_repeat Simple_repeat 2 44 0 826 227 13 40 chr3 9363432 9363657 -208673501 + MER20 DNA MER1_type 1 219 0 189 0 0 0 chr3 9363806 9363827 -208673331 + (TA)n Simple_repeat Simple_repeat 2 22 0 1761 184 7 3 chr3 9363827 9364121 -208673037 - AluJb SINE Alu -17 295 1 750 201 84 11 chr3 9364911 9365090 -208672068 + LTR47A LTR ERVL 261 452 0 521 173 18 125 chr3 9365489 9365516 -208671642 - MER5B DNA MER1_type -1 177 149 1468 191 71 31 chr3 9365516 9365867 -208671291 + MLT1A1 LTR MaLR 1 365 0 521 173 18 125 chr3 9365867 9366007 -208671151 - MER5B DNA MER1_type -29 149 28 225 65 0 0 chr3 9366072 9366103 -208671055 + (TC)n Simple_repeat Simple_repeat 2 32 0 335 282 116 39 chr3 9366174 9366355 -208670803 - MIR SINE MIR 0 262 68 216 298 0 0 chr3 9366430 9366487 -208670671 + MER5B DNA MER1_type 2 58 -120 7600 201 41 13 chr3 9366494 9367063 -208670095 + L1MC3 LINE L1 6059 6610 -1175 3660 68 0 6 chr3 9367063 9367546 -208669612 - L1PA8 LINE L1 0 6172 5693 7600 201 41 13 chr3 9367546 9368644 -208668514 + L1MC3 LINE L1 6610 7773 -12 341 250 29 58 chr3 9368693 9368797 -208668361 - MER5B DNA MER1_type -71 107 7 2539 49 7 0 chr3 9369037 9369344 -208667814 + AluY SINE Alu 2 310 -1 300 91 0 0 chr3 9370318 9370362 -208666796 + (TG)n Simple_repeat Simple_repeat 1 44 0 1974 169 31 6 chr3 9370364 9370719 -208666439 - THE1B LTR MaLR 0 364 1 247 281 0 0 chr3 9370803 9370860 -208666298 - MIR3 SINE MIR -50 158 102 771 312 0 14 chr3 9372237 9372458 -208664700 + MIR SINE MIR 45 262 0 21 57 0 0 chr3 9372889 9372924 -208664234 + AT_rich Low_complexity Low_complexity 1 35 0 2089 148 14 6 chr3 9375450 9375809 -208661349 - L1MA5 LINE L1 -478 5822 5461 2376 172 9 13 chr3 9375813 9376273 -208660885 + L1MA5 LINE L1 5843 6300 0 1033 301 32 60 chr3 9376459 9376956 -208660202 + MLT1H LTR MaLR 1 549 0 3811 175 4 4 chr3 9377361 9378057 -208659101 + L1MB1 LINE L1 5479 6174 -15 869 179 104 112 chr3 9378128 9378291 -208658867 - MER2 DNA MER2_type -1 344 181 2228 133 128 8 chr3 9378291 9378673 -208658485 - MSTA LTR MaLR 0 428 1 869 179 104 112 chr3 9378673 9378856 -208658302 - MER2 DNA MER2_type -164 181 1 195 311 14 0 chr3 9378886 9378960 -208658198 - MIR3 SINE MIR -12 196 122 223 308 0 15 chr3 9379329 9379394 -208657764 + L3b LINE CR1 1206 1269 -314 333 305 178 5 chr3 9381369 9381566 -208655592 + MIR SINE MIR 29 259 -3 1611 186 21 0 chr3 9381622 9381902 -208655256 + AluJo SINE Alu 1 286 -26 243 0 0 0 chr3 9381902 9381929 -208655229 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 2331 106 0 0 chr3 9383263 9383575 -208653583 + AluSx SINE Alu 1 312 0 1939 130 0 23 chr3 9384211 9384511 -208652647 - MER4A LTR ERV1 0 664 372 586 133 0 10 chr3 9384564 9384662 -208652496 - MER4A LTR ERV1 -566 98 2 475 244 1 22 chr3 9385605 9385715 -208651443 + MLT1E LTR MaLR 58 163 -404 214 181 0 24 chr3 9385715 9385798 -208651360 + (TA)n Simple_repeat Simple_repeat 1 81 0 1746 224 38 33 chr3 9385822 9386215 -208650943 + MLT1E LTR MaLR 199 593 0 1803 131 60 0 chr3 9386412 9386701 -208650457 - AluSx SINE Alu 0 305 1 566 261 48 52 chr3 9387662 9387911 -208649247 + LTR16A1 LTR ERVL 209 456 -1 21 0 0 0 chr3 9388282 9388303 -208648855 + AT_rich Low_complexity Low_complexity 1 21 0 232 286 0 0 chr3 9388452 9388515 -208648643 + (CA)n Simple_repeat Simple_repeat 2 64 0 207 100 0 0 chr3 9389450 9389480 -208647678 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 764 160 8 8 chr3 9390228 9390359 -208646799 - FLAM_C SINE Alu 0 133 3 353 295 38 0 chr3 9391512 9391617 -208645541 - MIR SINE MIR -104 158 50 321 277 52 59 chr3 9392943 9393217 -208643941 + L1ME4a LINE L1 5634 5908 -213 2012 141 10 0 chr3 9393217 9393514 -208643644 + AluSx SINE Alu 1 300 -12 321 277 52 59 chr3 9393514 9393556 -208643602 + L1ME4a LINE L1 5908 5949 -172 3134 167 86 28 chr3 9393556 9394243 -208642915 - LTR8A LTR ERV1 0 727 1 321 277 52 59 chr3 9394243 9394347 -208642811 + L1ME4a LINE L1 5949 6052 -69 439 349 108 4 chr3 9394951 9395229 -208641929 + L2 LINE L2 211 517 -2797 615 340 199 16 chr3 9395323 9396096 -208641062 + L2 LINE L2 982 1896 -1418 36 77 0 0 chr3 9396467 9396545 -208640613 + AT_rich Low_complexity Low_complexity 1 78 0 353 195 0 11 chr3 9396734 9396821 -208640337 + CT-rich Low_complexity Low_complexity 2 87 0 2448 63 0 0 chr3 9397333 9397635 -208639523 + AluY SINE Alu 1 302 -9 2287 83 0 13 chr3 9398032 9398332 -208638826 + AluSq SINE Alu 1 296 -17 220 211 42 28 chr3 9399698 9399769 -208637389 + (CAGAGA)n Simple_repeat Simple_repeat 4 75 0 23 33 0 0 chr3 9399927 9399957 -208637201 + AT_rich Low_complexity Low_complexity 1 30 0 311 313 99 15 chr3 9400251 9400382 -208636776 - MER5A DNA MER1_type -1 188 47 280 283 132 9 chr3 9400296 9400402 -208636756 + MER5A DNA MER1_type 68 186 -3 * 334 310 35 35 chr3 9400432 9400548 -208636610 + MIR SINE MIR 30 145 -63 471 143 36 0 chr3 9400556 9400640 -208636518 + L1MA5 LINE L1 6209 6295 -5 31 58 0 0 chr3 9400761 9400813 -208636345 + AT_rich Low_complexity Low_complexity 1 52 0 1912 178 3 23 chr3 9402280 9402634 -208634524 + MER7A DNA MER2_type 2 346 0 21 57 0 0 chr3 9402765 9402800 -208634358 + AT_rich Low_complexity Low_complexity 1 35 0 4752 182 26 40 chr3 9403110 9404001 -208633157 + L1MA4 LINE L1 4422 5325 -975 1944 131 40 0 chr3 9404001 9404298 -208632860 + AluSx SINE Alu 1 309 -3 4752 182 26 40 chr3 9404298 9405081 -208632077 + L1MA4 LINE L1 5325 6081 -219 2184 102 7 3 chr3 9405081 9405375 -208631783 + AluSx SINE Alu 1 295 -17 4752 182 26 40 chr3 9405375 9405586 -208631572 + L1MA4 LINE L1 6081 6294 -6 771 314 89 14 chr3 9405601 9406085 -208631073 + HAL1b LINE L1 305 824 -524 251 324 57 27 chr3 9406570 9407048 -208630110 + L1ME4a LINE L1 4168 4659 -1487 306 290 41 14 chr3 9407155 9407300 -208629858 + L1ME4a LINE L1 4804 4952 -1194 302 239 67 110 chr3 9407514 9407723 -208629435 + L1ME4a LINE L1 5259 5458 -2350 318 310 57 78 chr3 9407734 9408015 -208629143 + L1ME4a LINE L1 5509 5783 -2025 419 264 183 10 chr3 9409143 9409347 -208627811 + MIR SINE MIR 11 248 -14 198 0 0 0 chr3 9409366 9409388 -208627770 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2921 86 8 0 chr3 9409388 9409785 -208627373 - L1PA10 LINE L1 -20 6148 5749 219 69 0 0 chr3 9411466 9411495 -208625663 + (A)n Simple_repeat Simple_repeat 1 29 0 405 293 20 7 chr3 9411524 9411671 -208625487 - MER113 DNA MER1_type? -4 517 369 1114 66 7 0 chr3 9411673 9411825 -208625333 + L1PA13 LINE L1 6011 6163 0 481 301 71 0 chr3 9411828 9412024 -208625134 - MER63A DNA MER1_type 0 210 1 41706 39 23 1 chr3 9412265 9418227 -208618931 - L1PA3 LINE L1 0 6155 64 21 0 0 0 chr3 9418265 9418286 -208618872 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr3 9419803 9419828 -208617330 + (GA)n Simple_repeat Simple_repeat 2 26 0 379 292 50 8 chr3 9419940 9420060 -208617098 - MIR SINE MIR -57 151 27 273 330 0 0 chr3 9422293 9422387 -208614771 - MIR SINE MIR 0 262 169 1069 187 38 14 chr3 9422973 9423182 -208613976 - MER20 DNA MER1_type 0 219 6 402 266 21 63 chr3 9423297 9423440 -208613718 - MER5A DNA MER1_type 0 189 53 246 116 0 0 chr3 9423440 9423483 -208613675 + (T)n Simple_repeat Simple_repeat 1 43 0 2458 60 0 0 chr3 9423690 9423992 -208613166 - AluY SINE Alu -9 302 1 1405 111 0 44 chr3 9424268 9424493 -208612665 - L1PA16 LINE L1 -2 6164 5950 230 277 60 60 chr3 9426417 9426452 -208610706 + L1ME4a LINE L1 5955 5989 -132 2134 126 7 3 chr3 9426452 9426762 -208610396 + AluSx SINE Alu 2 312 0 230 277 60 60 chr3 9426762 9426892 -208610266 + L1ME4a LINE L1 5988 6120 -1 745 289 82 40 chr3 9427169 9427788 -208609370 - L2 LINE L2 -39 3274 2630 536 211 80 44 chr3 9427811 9428011 -208609147 + MER58 DNA MER1_type 1 2420 0 813 253 39 52 chr3 9428100 9428408 -208608750 - L2 LINE L2 -710 2604 2301 188 167 0 19 chr3 9428507 9428561 -208608597 + (TAA)n Simple_repeat Simple_repeat 3 55 0 944 265 89 29 chr3 9428619 9429000 -208608158 + LTR16B LTR ERVL 27 430 -34 271 301 11 32 chr3 9429060 9429153 -208608005 - MIR SINE MIR -70 192 102 933 213 32 19 chr3 9429294 9429510 -208607648 + MER20 DNA MER1_type 1 219 0 21 36 0 0 chr3 9430279 9430307 -208606851 + AT_rich Low_complexity Low_complexity 1 28 0 495 252 99 0 chr3 9431110 9431241 -208605917 - MIR SINE MIR -87 175 32 212 376 0 12 chr3 9431427 9431512 -208605646 + MIR3 SINE MIR 94 177 -31 804 139 115 171 chr3 9431544 9431831 -208605327 + AluJb SINE Alu 42 312 0 1275 97 20 5 chr3 9431893 9432089 -208605069 - L1MA3 LINE L1 0 6305 6107 2297 147 16 8 chr3 9432694 9433082 -208604076 + L1MC1 LINE L1 5943 6333 0 33 0 0 0 chr3 9435513 9435546 -208601612 + AT_rich Low_complexity Low_complexity 1 33 0 383 231 78 111 chr3 9435577 9435820 -208601338 - MLT1K LTR MaLR 0 588 354 4347 188 36 4 chr3 9435907 9436807 -208600351 - L1MC2 LINE L1 -9 6335 5408 213 65 0 0 chr3 9439670 9439701 -208597457 + (T)n Simple_repeat Simple_repeat 1 31 0 1962 192 31 17 chr3 9440468 9440890 -208596268 + MSTA LTR MaLR 1 428 0 273 335 115 0 chr3 9440948 9441166 -208595992 + L1ME LINE L1 5549 5791 -330 3721 151 55 8 chr3 9441305 9442057 -208595101 - L1MA4 LINE L1 -323 5977 5190 599 245 45 39 chr3 9442072 9442128 -208595030 - MLT1H LTR MaLR -379 170 116 2016 108 21 10 chr3 9442128 9442416 -208594742 + AluSq SINE Alu 8 298 -15 599 245 45 39 chr3 9442416 9442514 -208594644 - MLT1H LTR MaLR -433 116 15 225 225 0 0 chr3 9443024 9443064 -208594094 + MIR SINE MIR 82 121 -87 24 32 0 0 chr3 9443447 9443478 -208593680 + AT_rich Low_complexity Low_complexity 1 31 0 1398 124 0 5 chr3 9443981 9444182 -208592976 - AluSc SINE Alu 0 309 110 24 0 0 0 chr3 9444442 9444466 -208592692 + AT_rich Low_complexity Low_complexity 1 24 0 752 355 60 48 chr3 9444927 9445814 -208591344 - L2 LINE L2 -219 3053 2158 386 335 22 54 chr3 9445814 9445999 -208591159 - MER5A DNA MER1_type -1 188 10 397 338 87 27 chr3 9446007 9446457 -208590701 - L2 LINE L2 -1158 2156 1680 2125 241 27 46 chr3 9446516 9446585 -208590573 - L1MB7 LINE L1 0 6184 6115 1943 75 113 0 chr3 9446585 9446851 -208590307 - AluSg SINE Alu -13 297 2 2125 241 27 46 chr3 9446851 9447437 -208589721 - L1MB7 LINE L1 -69 6115 5541 384 256 65 60 chr3 9447884 9448052 -208589106 + MIR SINE MIR 80 248 -14 415 285 85 60 chr3 9449934 9450134 -208587024 - MIR SINE MIR -1 261 57 1769 137 22 4 chr3 9450233 9450511 -208586647 + AluSx SINE Alu 15 297 -15 21 0 0 0 chr3 9450561 9450582 -208586576 + AT_rich Low_complexity Low_complexity 1 21 0 2152 106 0 48 chr3 9451191 9451503 -208585655 - AluSq SINE Alu -16 297 1 453 282 60 46 chr3 9453045 9453214 -208583944 + MLT1J2 LTR MaLR 58 234 -212 663 123 123 0 chr3 9453214 9453344 -208583814 - L1PB2 LINE L1 0 6151 6006 453 282 60 46 chr3 9453344 9453429 -208583729 + MLT1J2 LTR MaLR 234 316 -130 194 304 72 0 chr3 9453571 9453640 -208583518 - L2 LINE L2 -13 3259 3186 2092 138 3 3 chr3 9454042 9454346 -208582812 + AluSx SINE Alu 1 304 -8 245 271 43 57 chr3 9454477 9454617 -208582541 - L1ME3A LINE L1 -6 6164 6027 398 231 133 6 chr3 9454750 9454923 -208582235 - L1ME3A LINE L1 -232 5938 5744 351 284 134 83 chr3 9455413 9455798 -208581360 + L2 LINE L2 2906 3312 -1 282 119 30 15 chr3 9455805 9455872 -208581286 + GA-rich Low_complexity Low_complexity 3 70 0 329 291 27 27 chr3 9457759 9457869 -208579289 - MIR3 SINE MIR -1 207 98 217 235 76 101 chr3 9457887 9458006 -208579152 - L2 LINE L2 0 3313 3198 495 342 82 0 chr3 9458076 9458307 -208578851 + MIR SINE MIR 1 250 -12 288 153 124 146 chr3 9458537 9458674 -208578484 + MER91B DNA MER1_type 31 164 -26 1037 274 125 63 chr3 9458792 9459303 -208577855 - MLT1G1 LTR MaLR -5 590 48 205 299 0 15 chr3 9459349 9459416 -208577742 + L2 LINE L2 3248 3313 0 1431 183 70 8 chr3 9460807 9461064 -208576094 - AluJb SINE Alu -39 273 1 2157 124 0 3 chr3 9461646 9461944 -208575214 - AluSg SINE Alu -13 297 1 210 303 13 13 chr3 9461999 9462075 -208575083 + L2 LINE L2 3188 3263 -9 2458 151 2 28 chr3 9462154 9462577 -208574581 - MSTB1 LTR MaLR -20 412 1 252 0 0 0 chr3 9463841 9463869 -208573289 + (A)n Simple_repeat Simple_repeat 1 28 0 1479 144 0 132 chr3 9465219 9465546 -208571612 + AluJo SINE Alu 11 294 -18 643 291 119 61 chr3 9465550 9465599 -208571559 - MLT1I LTR MaLR -45 364 319 2192 129 3 0 chr3 9465599 9465910 -208571248 - AluSx SINE Alu 0 312 1 643 291 119 61 chr3 9465910 9466204 -208570954 - MLT1I LTR MaLR -90 319 1 2053 188 62 7 chr3 9466226 9466630 -208570528 - MSTB LTR MaLR 0 426 1 302 311 39 10 chr3 9467098 9467201 -208569957 + L2 LINE L2 3196 3301 -12 360 125 0 0 chr3 9468856 9468920 -208568238 + (CA)n Simple_repeat Simple_repeat 2 65 0 294 200 0 0 chr3 9469135 9469190 -208567968 - L2 LINE L2 0 3313 3259 208 309 11 32 chr3 9469532 9469626 -208567532 - MIR3 SINE MIR -7 201 110 449 70 0 14 chr3 9470695 9470766 -208566392 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 2158 126 0 3 chr3 9470900 9471201 -208565957 - AluSx SINE Alu -12 300 1 22 70 0 0 chr3 9471247 9471290 -208565868 + AT_rich Low_complexity Low_complexity 1 43 0 383 360 29 6 chr3 9471443 9471618 -208565540 + MER5A DNA MER1_type 8 186 -3 283 271 90 71 chr3 9471724 9471879 -208565279 + MIR SINE MIR 41 198 -64 710 134 11 213 chr3 9472930 9473207 -208563951 - L1MA9 LINE L1 0 6312 6092 2124 102 3 3 chr3 9474891 9475176 -208561982 + AluSc SINE Alu 3 287 -22 367 218 0 32 chr3 9475909 9476033 -208561125 + CT-rich Low_complexity Low_complexity 1 120 0 181 275 120 93 chr3 9476049 9476307 -208560851 + L2 LINE L2 2995 3259 -54 6090 14 0 0 chr3 9476923 9477623 -208559535 - L1PA2 LINE L1 -202 5953 5254 1826 23 0 0 chr3 9477631 9477845 -208559313 + L1PA2 LINE L1 5942 6155 0 2101 121 3 3 chr3 9478242 9478540 -208558618 + AluSx SINE Alu 1 298 -14 185 310 17 17 chr3 9480813 9480871 -208556287 - L2 LINE L2 -26 3246 3189 190 296 19 0 chr3 9481778 9481832 -208555326 + L2 LINE L2 3210 3264 -8 36 62 0 0 chr3 9481882 9481946 -208555212 + AT_rich Low_complexity Low_complexity 1 64 0 289 281 31 31 chr3 9481956 9482052 -208555106 - MIR3 SINE MIR -26 182 87 1764 150 0 11 chr3 9482203 9482477 -208554681 + AluJb SINE Alu 1 271 -41 291 182 23 11 chr3 9482483 9482571 -208554587 + GA-rich Low_complexity Low_complexity 3 91 0 299 303 33 40 chr3 9482633 9482785 -208554373 - L2 LINE L2 -1034 2280 2130 2000 166 63 19 chr3 9482811 9483221 -208553937 - MSTC LTR MaLR 0 428 1 200 188 0 0 chr3 9483813 9483845 -208553313 + polypurine Low_complexity Low_complexity 4 35 0 1926 127 0 38 chr3 9483853 9484219 -208552939 + AluSx SINE Alu 11 365 0 950 288 82 63 chr3 9484327 9484444 -208552714 - MER34 LTR ERV1 0 542 429 1885 173 0 10 chr3 9484444 9484750 -208552408 - AluJb SINE Alu -7 305 3 950 288 82 63 chr3 9484750 9485159 -208551999 - MER34 LTR ERV1 -113 429 6 1435 193 62 94 chr3 9485353 9485578 -208551580 - MER34-int LTR ERV1 -165 6040 5809 2148 201 36 2 chr3 9485578 9485996 -208551162 - MSTB1 LTR MaLR 0 432 1 1435 193 62 94 chr3 9485996 9486388 -208550770 - MER34-int LTR ERV1 -396 5809 4190 1666 187 45 93 chr3 9486398 9486465 -208550693 - MER31-int LTR ERV1 -3609 1327 1258 2233 135 10 39 chr3 9486465 9486849 -208550309 + MER83C LTR ERV1 1 373 0 1666 187 45 93 chr3 9486849 9487353 -208549805 - MER31-int LTR ERV1 -3678 1258 783 2387 53 0 3 chr3 9487518 9487802 -208549356 + AluY SINE Alu 13 295 -16 207 0 0 0 chr3 9488349 9488372 -208548786 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1821 135 7 7 chr3 9488373 9488647 -208548511 - AluSx SINE Alu -36 276 3 545 264 51 43 chr3 9488729 9488929 -208548229 - MER34 LTR ERV1 0 542 338 2823 177 91 56 chr3 9488929 9489631 -208547527 + LTR8A LTR ERV1 1 727 0 545 264 51 43 chr3 9489631 9489665 -208547493 - MER34 LTR ERV1 -204 338 306 447 241 0 9 chr3 9489760 9489872 -208547286 - MER34 LTR ERV1 -431 111 1 1591 220 58 114 chr3 9490612 9491402 -208545756 + LTR1B LTR ERV1 1 746 -80 23 54 0 0 chr3 9491779 9491816 -208545342 + AT_rich Low_complexity Low_complexity 1 37 0 650 254 78 15 chr3 9492190 9492395 -208544763 - MER20 DNA MER1_type 0 219 2 510 302 15 25 chr3 9493246 9493448 -208543710 + MLT1K LTR MaLR 380 579 -9 2384 107 0 3 chr3 9493771 9494080 -208543078 - AluSc SINE Alu -1 308 1 300 361 106 18 chr3 9494083 9494310 -208542848 - MLT1K LTR MaLR -158 430 184 409 253 140 27 chr3 9494690 9494876 -208542282 - MIR SINE MIR -13 249 43 251 194 113 0 chr3 9494952 9495014 -208542144 - MER94 DNA DNA -65 69 1 2458 184 38 35 chr3 9495080 9495414 -208541744 - L1MC2 LINE L1 -11 7770 7439 1922 160 0 26 chr3 9495414 9495727 -208541431 - AluSx SINE Alu -7 305 1 2458 184 38 35 chr3 9495727 9495982 -208541176 - L1MC2 LINE L1 -342 7439 6137 425 275 8 8 chr3 9496003 9496134 -208541024 - L1ME2 LINE L1 -12 6152 6022 715 184 0 27 chr3 9496416 9496563 -208540595 + FLAM_C SINE Alu 1 143 0 2128 234 74 34 chr3 9497192 9497966 -208539192 - L1ME1 LINE L1 -4 6231 5427 515 182 0 0 chr3 9498117 9498205 -208538953 + AluJ/FLAM SINE Alu 1 88 -224 27 0 0 0 chr3 9498271 9498298 -208538860 + AT_rich Low_complexity Low_complexity 1 27 0 661 231 30 10 chr3 9498302 9498501 -208538657 - L1MB8 LINE L1 -1 6177 5975 799 281 90 19 chr3 9498589 9498685 -208538473 - L1ME1 LINE L1 -2701 3514 3426 1697 180 7 3 chr3 9498685 9498979 -208538179 - AluSx SINE Alu -14 298 4 799 281 90 19 chr3 9498979 9499579 -208537579 - L1ME1 LINE L1 -2789 3426 2768 480 222 11 43 chr3 9499577 9499762 -208537396 - L1ME1 LINE L1 -5265 1131 953 * 239 133 67 0 chr3 9499786 9499831 -208537327 - MLT1E2 LTR MaLR -42 584 537 621 210 122 39 chr3 9499846 9500027 -208537131 - MLT1E2 LTR MaLR -369 257 62 434 322 95 57 chr3 9500122 9500898 -208536260 - L1ME1 LINE L1 -5554 842 37 251 289 12 0 chr3 9501300 9501383 -208535775 + MARNA DNA Mariner 448 531 -55 627 272 38 22 chr3 9501943 9502127 -208535031 + MIR SINE MIR 8 194 -68 187 382 11 0 chr3 9502133 9502222 -208534936 + MIR SINE MIR 172 261 -1 285 360 0 9 chr3 9502240 9502354 -208534804 + MIR SINE MIR 136 248 -14 789 95 0 0 chr3 9502590 9502706 -208534452 + (TCCCC)n Simple_repeat Simple_repeat 4 119 0 988 183 17 6 chr3 9502706 9502881 -208534277 - AluJb SINE Alu -20 292 116 366 330 98 71 chr3 9503212 9503384 -208533774 - MLT1K LTR MaLR -34 554 388 2295 115 0 0 chr3 9503384 9503680 -208533478 - AluSx SINE Alu -12 300 5 366 330 98 71 chr3 9503680 9504016 -208533142 - MLT1K LTR MaLR -200 388 32 214 345 0 35 chr3 9504625 9504712 -208532446 + MIR SINE MIR 104 187 -75 34 42 0 0 chr3 9504791 9504839 -208532319 + AT_rich Low_complexity Low_complexity 1 48 0 251 282 12 0 chr3 9504856 9504941 -208532217 - MLT1L LTR MaLR -13 602 517 280 333 89 37 chr3 9506255 9506390 -208530768 - L2 LINE L2 -6 3266 3125 299 301 63 63 chr3 9506902 9507108 -208530050 - MLT1K LTR MaLR -90 498 293 346 290 21 21 chr3 9507286 9507379 -208529779 + MER91B DNA MER1_type 97 189 -1 297 339 17 0 chr3 9507399 9507517 -208529641 - MLT1K LTR MaLR -319 269 150 252 0 0 0 chr3 9507574 9507602 -208529556 + (A)n Simple_repeat Simple_repeat 1 28 0 183 100 0 0 chr3 9507627 9507657 -208529501 + (CAA)n Simple_repeat Simple_repeat 2 31 0 404 319 8 0 chr3 9507797 9507916 -208529242 - MIR3 SINE MIR -23 185 66 181 161 0 54 chr3 9509156 9509212 -208527946 + GA-rich Low_complexity Low_complexity 1 53 0 277 318 16 8 chr3 9511202 9511328 -208525830 + CT-rich Low_complexity Low_complexity 2 128 0 353 310 0 0 chr3 9514393 9514480 -208522678 + MIR SINE MIR 50 136 -72 388 347 43 20 chr3 9514967 9515267 -208521891 + MLT1K LTR MaLR 200 506 -82 508 270 157 22 chr3 9516183 9516413 -208520745 - MIR SINE MIR 0 262 2 605 254 42 31 chr3 9517310 9517503 -208519655 + MIR SINE MIR 12 206 -56 285 29 0 0 chr3 9517709 9517743 -208519415 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 248 174 0 14 chr3 9517744 9517813 -208519345 + GA-rich Low_complexity Low_complexity 1 68 0 210 288 76 68 chr3 9517930 9518048 -208519110 + MIR SINE MIR 16 134 -128 207 300 125 0 chr3 9518062 9518142 -208519016 - L2 LINE L2 -15 3298 3209 266 247 41 0 chr3 9518142 9518215 -208518943 + CT-rich Low_complexity Low_complexity 4 79 0 1431 271 106 37 chr3 9518219 9519086 -208518072 - L2 LINE L2 -94 3219 2295 197 288 0 0 chr3 9519096 9519155 -208518003 + MIR SINE MIR 134 192 -70 24 32 0 0 chr3 9519464 9519495 -208517663 + AT_rich Low_complexity Low_complexity 1 31 0 223 284 0 0 chr3 9520487 9520554 -208516604 + CT-rich Low_complexity Low_complexity 1 67 0 4967 44 7 2 chr3 9520608 9521222 -208515936 - L1PA7 LINE L1 -2 6152 5536 1987 107 10 17 chr3 9521222 9521513 -208515645 - AluSx SINE Alu -23 289 1 728 280 58 4 chr3 9521539 9521764 -208515394 + MIR SINE MIR 1 237 -25 630 292 67 17 chr3 9522125 9522365 -208514793 + MIR SINE MIR 5 256 -6 448 269 126 40 chr3 9522612 9522835 -208514323 - MIR SINE MIR -16 246 5 2354 109 22 11 chr3 9523423 9523780 -208513378 + THE1B LTR MaLR 1 361 -3 22 35 0 0 chr3 9523988 9524017 -208513141 + AT_rich Low_complexity Low_complexity 1 29 0 2158 122 0 0 chr3 9524126 9524422 -208512736 + AluSx SINE Alu 1 296 -16 2264 116 0 0 chr3 9524740 9525042 -208512116 - AluSx SINE Alu -10 302 1 234 172 103 17 chr3 9525245 9525303 -208511855 - L2 LINE L2 0 3313 3251 396 0 0 0 chr3 9525950 9525994 -208511164 + (CA)n Simple_repeat Simple_repeat 1 44 0 369 43 0 0 chr3 9526510 9526557 -208510601 + (TG)n Simple_repeat Simple_repeat 2 48 0 249 340 156 21 chr3 9526783 9526924 -208510234 - MER5A DNA MER1_type 0 189 30 735 211 149 0 chr3 9526928 9527089 -208510069 - MER5A DNA MER1_type 0 189 5 449 290 158 6 chr3 9527223 9527406 -208509752 - MIR SINE MIR -32 230 20 592 169 128 12 chr3 9527417 9527589 -208509569 - L1MA7 LINE L1 -2 6289 6098 196 267 0 33 chr3 9527656 9527716 -208509442 - L2 LINE L2 -218 3054 2997 32 0 0 0 chr3 9578353 9578385 -208458773 + AT_rich Low_complexity Low_complexity 1 32 0 1962 192 31 17 chr3 9579150 9579572 -208457586 + MSTA LTR MaLR 1 428 0 273 335 115 0 chr3 9579630 9579848 -208457310 + L1ME LINE L1 5549 5791 -330 3721 151 55 8 chr3 9579987 9580739 -208456419 - L1MA4 LINE L1 -323 5977 5190 599 245 45 39 chr3 9580754 9580810 -208456348 - MLT1H LTR MaLR -379 170 116 2029 104 21 10 chr3 9580810 9581098 -208456060 + AluSq SINE Alu 8 298 -15 599 245 45 39 chr3 9581098 9581196 -208455962 - MLT1H LTR MaLR -433 116 15 225 225 0 0 chr3 9581706 9581746 -208455412 + MIR SINE MIR 82 121 -87 24 32 0 0 chr3 9582129 9582160 -208454998 + AT_rich Low_complexity Low_complexity 1 31 0 1398 124 0 5 chr3 9582663 9582864 -208454294 - AluSc SINE Alu 0 309 110 24 0 0 0 chr3 9583124 9583148 -208454010 + AT_rich Low_complexity Low_complexity 1 24 0 752 355 60 48 chr3 9583609 9584496 -208452662 - L2 LINE L2 -219 3053 2158 386 335 22 54 chr3 9584496 9584681 -208452477 - MER5A DNA MER1_type -1 188 10 397 338 87 27 chr3 9584689 9585139 -208452019 - L2 LINE L2 -1158 2156 1680 2125 241 27 46 chr3 9585198 9585267 -208451891 - L1MB7 LINE L1 0 6184 6115 1943 75 113 0 chr3 9585267 9585533 -208451625 - AluSg SINE Alu -13 297 2 2125 241 27 46 chr3 9585533 9586119 -208451039 - L1MB7 LINE L1 -69 6115 5541 384 256 65 60 chr3 9586566 9586734 -208450424 + MIR SINE MIR 80 248 -14 415 285 85 60 chr3 9588616 9588816 -208448342 - MIR SINE MIR -1 261 57 1769 137 22 4 chr3 9588915 9589193 -208447965 + AluSx SINE Alu 15 297 -15 21 0 0 0 chr3 9589243 9589264 -208447894 + AT_rich Low_complexity Low_complexity 1 21 0 2152 106 0 48 chr3 9589873 9590185 -208446973 - AluSq SINE Alu -16 297 1 453 282 60 46 chr3 9591727 9591896 -208445262 + MLT1J2 LTR MaLR 58 234 -212 663 123 123 0 chr3 9591896 9592026 -208445132 - L1PB2 LINE L1 0 6151 6006 453 282 60 46 chr3 9592026 9592111 -208445047 + MLT1J2 LTR MaLR 234 316 -130 194 304 72 0 chr3 9592253 9592322 -208444836 - L2 LINE L2 -13 3259 3186 2092 138 3 3 chr3 9592724 9593028 -208444130 + AluSx SINE Alu 1 304 -8 245 271 43 57 chr3 9593159 9593299 -208443859 - L1ME3A LINE L1 -6 6164 6027 398 231 133 6 chr3 9593432 9593605 -208443553 - L1ME3A LINE L1 -232 5938 5744 351 284 134 83 chr3 9594095 9594480 -208442678 + L2 LINE L2 2906 3312 -1 282 119 30 15 chr3 9594487 9594554 -208442604 + GA-rich Low_complexity Low_complexity 3 70 0 329 291 27 27 chr3 9596441 9596551 -208440607 - MIR3 SINE MIR -1 207 98 217 235 76 101 chr3 9596569 9596688 -208440470 - L2 LINE L2 0 3313 3198 495 342 82 0 chr3 9596758 9596989 -208440169 + MIR SINE MIR 1 250 -12 288 153 124 146 chr3 9597219 9597356 -208439802 + MER91B DNA MER1_type 31 164 -26 1037 274 125 63 chr3 9597474 9597985 -208439173 - MLT1G1 LTR MaLR -5 590 48 205 299 0 15 chr3 9598031 9598098 -208439060 + L2 LINE L2 3248 3313 0 1431 183 70 8 chr3 9599489 9599746 -208437412 - AluJb SINE Alu -39 273 1 2157 124 0 3 chr3 9600328 9600626 -208436532 - AluSg SINE Alu -13 297 1 210 303 13 13 chr3 9600681 9600757 -208436401 + L2 LINE L2 3188 3263 -9 2429 154 2 28 chr3 9600836 9601259 -208435899 - MSTB1 LTR MaLR -20 412 1 261 0 0 0 chr3 9602523 9602552 -208434606 + (A)n Simple_repeat Simple_repeat 1 29 0 1479 144 0 132 chr3 9603902 9604229 -208432929 + AluJo SINE Alu 11 294 -18 643 291 119 61 chr3 9604233 9604282 -208432876 - MLT1I LTR MaLR -45 364 319 2192 129 3 0 chr3 9604282 9604593 -208432565 - AluSx SINE Alu 0 312 1 643 291 119 61 chr3 9604593 9604887 -208432271 - MLT1I LTR MaLR -90 319 1 2053 188 62 7 chr3 9604909 9605313 -208431845 - MSTB LTR MaLR 0 426 1 302 311 39 10 chr3 9605781 9605884 -208431274 + L2 LINE L2 3196 3301 -12 360 125 0 0 chr3 9607539 9607603 -208429555 + (CA)n Simple_repeat Simple_repeat 2 65 0 294 200 0 0 chr3 9607818 9607873 -208429285 - L2 LINE L2 0 3313 3259 208 309 11 32 chr3 9608215 9608309 -208428849 - MIR3 SINE MIR -7 201 110 449 70 0 14 chr3 9609378 9609449 -208427709 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 2158 126 0 3 chr3 9609583 9609884 -208427274 - AluSx SINE Alu -12 300 1 22 70 0 0 chr3 9609930 9609973 -208427185 + AT_rich Low_complexity Low_complexity 1 43 0 383 360 29 6 chr3 9610126 9610301 -208426857 + MER5A DNA MER1_type 8 186 -3 283 271 90 71 chr3 9610407 9610562 -208426596 + MIR SINE MIR 41 198 -64 710 134 11 213 chr3 9611613 9611890 -208425268 - L1MA9 LINE L1 0 6312 6092 2124 102 3 3 chr3 9613574 9613859 -208423299 + AluSc SINE Alu 3 287 -22 367 218 0 32 chr3 9614592 9614716 -208422442 + CT-rich Low_complexity Low_complexity 1 120 0 181 275 120 93 chr3 9614732 9614990 -208422168 + L2 LINE L2 2995 3259 -54 6090 14 0 0 chr3 9615606 9616306 -208420852 - L1PA4 LINE L1 -202 5953 5254 1572 66 9 0 chr3 9616314 9616526 -208420632 + L1PA4 LINE L1 5942 6155 0 2101 121 3 3 chr3 9616925 9617223 -208419935 + AluSx SINE Alu 1 298 -14 185 310 17 17 chr3 9619496 9619554 -208417604 - L2 LINE L2 -26 3246 3189 190 296 19 0 chr3 9620461 9620515 -208416643 + L2 LINE L2 3210 3264 -8 36 62 0 0 chr3 9620565 9620629 -208416529 + AT_rich Low_complexity Low_complexity 1 64 0 289 281 31 31 chr3 9620639 9620735 -208416423 - MIR3 SINE MIR -26 182 87 1764 150 0 11 chr3 9620886 9621160 -208415998 + AluJb SINE Alu 1 271 -41 291 182 23 11 chr3 9621166 9621254 -208415904 + GA-rich Low_complexity Low_complexity 3 91 0 299 303 33 40 chr3 9621316 9621468 -208415690 - L2 LINE L2 -1034 2280 2130 2000 166 63 19 chr3 9621494 9621904 -208415254 - MSTC LTR MaLR 0 428 1 200 188 0 0 chr3 9622496 9622528 -208414630 + polypurine Low_complexity Low_complexity 4 35 0 1926 127 0 38 chr3 9622536 9622902 -208414256 + AluSx SINE Alu 11 365 0 950 288 82 63 chr3 9623010 9623127 -208414031 - MER34 LTR ERV1 0 542 429 1885 173 0 10 chr3 9623127 9623433 -208413725 - AluJb SINE Alu -7 305 3 950 288 82 63 chr3 9623433 9623842 -208413316 - MER34 LTR ERV1 -113 429 6 1435 193 62 94 chr3 9624036 9624261 -208412897 - MER34-int LTR ERV1 -165 6040 5809 2148 201 36 2 chr3 9624261 9624679 -208412479 - MSTB1 LTR MaLR 0 432 1 1435 193 62 94 chr3 9624679 9625071 -208412087 - MER34-int LTR ERV1 -396 5809 4190 1666 187 45 93 chr3 9625081 9625148 -208412010 - MER31-int LTR ERV1 -3609 1327 1258 2233 135 10 39 chr3 9625148 9625532 -208411626 + MER83C LTR ERV1 1 373 0 1666 187 45 93 chr3 9625532 9626036 -208411122 - MER31-int LTR ERV1 -3678 1258 783 2390 53 0 3 chr3 9626201 9626485 -208410673 + AluY SINE Alu 13 295 -16 207 0 0 0 chr3 9627032 9627055 -208410103 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1834 131 7 7 chr3 9627056 9627330 -208409828 - AluSx SINE Alu -36 276 3 613 264 51 43 chr3 9627412 9627612 -208409546 - MER34 LTR ERV1 0 542 338 2848 177 91 56 chr3 9627612 9628314 -208408844 + LTR8A LTR ERV1 1 727 0 613 264 51 43 chr3 9628314 9628348 -208408810 - MER34 LTR ERV1 -204 338 306 488 259 76 19 chr3 9628397 9628555 -208408603 - MER34 LTR ERV1 -375 167 1 1817 215 60 115 chr3 9629295 9630085 -208407073 + LTR1B LTR ERV1 1 746 -80 23 54 0 0 chr3 9630462 9630499 -208406659 + AT_rich Low_complexity Low_complexity 1 37 0 658 254 78 15 chr3 9630873 9631078 -208406080 - MER20 DNA MER1_type 0 219 2 571 281 13 68 chr3 9631896 9632131 -208405027 + MLT1K LTR MaLR 358 579 -9 2350 107 0 3 chr3 9632454 9632763 -208404395 - AluSc SINE Alu -1 308 1 366 361 106 18 chr3 9632766 9632993 -208404165 - MLT1K LTR MaLR -158 430 184 418 253 140 27 chr3 9633373 9633559 -208403599 - MIR SINE MIR -13 249 43 265 259 94 0 chr3 9633612 9633697 -208403461 - MER94 DNA DNA -41 93 1 2635 184 38 35 chr3 9633763 9634097 -208403061 - L1MC2 LINE L1 -11 7770 7439 1892 160 0 26 chr3 9634097 9634410 -208402748 - AluSx SINE Alu -7 305 1 2635 184 38 35 chr3 9634410 9634665 -208402493 - L1MC2 LINE L1 -342 7439 6137 463 275 8 8 chr3 9634686 9634817 -208402341 - L1ME2 LINE L1 -12 6152 6022 712 184 0 27 chr3 9635099 9635246 -208401912 + FLAM_C SINE Alu 1 143 0 2344 234 74 34 chr3 9635875 9636649 -208400509 - L1ME1 LINE L1 -4 6231 5427 505 182 0 0 chr3 9636800 9636888 -208400270 + AluJ/FLAM SINE Alu 1 88 -224 27 0 0 0 chr3 9636954 9636981 -208400177 + AT_rich Low_complexity Low_complexity 1 27 0 720 231 30 10 chr3 9636985 9637184 -208399974 - L1MB8 LINE L1 -1 6177 5975 950 281 90 19 chr3 9637272 9637368 -208399790 - L1ME1 LINE L1 -2701 3514 3426 1690 180 7 3 chr3 9637368 9637662 -208399496 - AluSx SINE Alu -14 298 4 950 281 90 19 chr3 9637662 9638262 -208398896 - L1ME1 LINE L1 -2789 3426 2768 519 225 11 43 chr3 9638258 9638445 -208398713 - L1ME1 LINE L1 -5263 1133 953 * 253 133 67 0 chr3 9638469 9638514 -208398644 - MLT1E2 LTR MaLR -42 584 537 683 216 119 38 chr3 9638525 9638710 -208398448 - MLT1E2 LTR MaLR -365 261 62 634 314 101 62 chr3 9638805 9639581 -208397577 - L1ME1 LINE L1 -5554 842 37 251 289 12 0 chr3 9639983 9640066 -208397092 + MARNA DNA Mariner 448 531 -55 627 272 38 22 chr3 9640626 9640810 -208396348 + MIR SINE MIR 8 194 -68 187 382 11 0 chr3 9640816 9640905 -208396253 + MIR SINE MIR 172 261 -1 285 360 0 9 chr3 9640923 9641037 -208396121 + MIR SINE MIR 136 248 -14 789 95 0 0 chr3 9641273 9641389 -208395769 + (TCCCC)n Simple_repeat Simple_repeat 4 119 0 988 183 17 6 chr3 9641389 9641564 -208395594 - AluJb SINE Alu -20 292 116 366 330 98 71 chr3 9641895 9642067 -208395091 - MLT1K LTR MaLR -34 554 388 2295 115 0 0 chr3 9642067 9642363 -208394795 - AluSx SINE Alu -12 300 5 366 330 98 71 chr3 9642363 9642699 -208394459 - MLT1K LTR MaLR -200 388 32 214 345 0 35 chr3 9643308 9643395 -208393763 + MIR SINE MIR 104 187 -75 34 42 0 0 chr3 9643474 9643522 -208393636 + AT_rich Low_complexity Low_complexity 1 48 0 251 282 12 0 chr3 9643539 9643624 -208393534 - MLT1L LTR MaLR -13 602 517 280 333 89 37 chr3 9644938 9645073 -208392085 - L2 LINE L2 -6 3266 3125 299 301 63 63 chr3 9645585 9645791 -208391367 - MLT1K LTR MaLR -90 498 293 346 290 21 21 chr3 9645969 9646062 -208391096 + MER91B DNA MER1_type 97 189 -1 297 339 17 0 chr3 9646082 9646200 -208390958 - MLT1K LTR MaLR -319 269 150 252 0 0 0 chr3 9646257 9646285 -208390873 + (A)n Simple_repeat Simple_repeat 1 28 0 183 100 0 0 chr3 9646310 9646340 -208390818 + (CAA)n Simple_repeat Simple_repeat 2 31 0 404 319 8 0 chr3 9646480 9646599 -208390559 - MIR3 SINE MIR -23 185 66 181 161 0 54 chr3 9647839 9647895 -208389263 + GA-rich Low_complexity Low_complexity 1 53 0 277 318 16 8 chr3 9649885 9650011 -208387147 + CT-rich Low_complexity Low_complexity 2 128 0 353 310 0 0 chr3 9653076 9653163 -208383995 + MIR SINE MIR 50 136 -72 388 347 43 20 chr3 9653650 9653950 -208383208 + MLT1K LTR MaLR 200 506 -82 508 270 157 22 chr3 9654866 9655096 -208382062 - MIR SINE MIR 0 262 2 605 254 42 31 chr3 9655993 9656186 -208380972 + MIR SINE MIR 12 206 -56 285 29 0 0 chr3 9656392 9656426 -208380732 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 248 174 0 14 chr3 9656427 9656496 -208380662 + GA-rich Low_complexity Low_complexity 1 68 0 210 288 76 68 chr3 9656613 9656731 -208380427 + MIR SINE MIR 16 134 -128 207 300 125 0 chr3 9656745 9656825 -208380333 - L2 LINE L2 -15 3298 3209 266 247 41 0 chr3 9656825 9656898 -208380260 + CT-rich Low_complexity Low_complexity 4 79 0 1431 271 106 37 chr3 9656902 9657769 -208379389 - L2 LINE L2 -94 3219 2295 197 288 0 0 chr3 9657779 9657838 -208379320 + MIR SINE MIR 134 192 -70 24 32 0 0 chr3 9658147 9658178 -208378980 + AT_rich Low_complexity Low_complexity 1 31 0 223 284 0 0 chr3 9659170 9659237 -208377921 + CT-rich Low_complexity Low_complexity 1 67 0 4967 44 7 2 chr3 9659291 9659905 -208377253 - L1PA7 LINE L1 -2 6152 5536 1987 107 10 17 chr3 9659905 9660196 -208376962 - AluSx SINE Alu -23 289 1 728 280 58 4 chr3 9660222 9660447 -208376711 + MIR SINE MIR 1 237 -25 630 292 67 17 chr3 9660808 9661048 -208376110 + MIR SINE MIR 5 256 -6 448 269 126 40 chr3 9661295 9661518 -208375640 - MIR SINE MIR -16 246 5 2354 109 22 11 chr3 9662106 9662463 -208374695 + THE1B LTR MaLR 1 361 -3 22 35 0 0 chr3 9662671 9662700 -208374458 + AT_rich Low_complexity Low_complexity 1 29 0 2158 122 0 0 chr3 9662809 9663105 -208374053 + AluSx SINE Alu 1 296 -16 2264 116 0 0 chr3 9663423 9663725 -208373433 - AluSx SINE Alu -10 302 1 234 172 103 17 chr3 9663928 9663986 -208373172 - L2 LINE L2 0 3313 3251 396 0 0 0 chr3 9664633 9664677 -208372481 + (CA)n Simple_repeat Simple_repeat 1 44 0 369 43 0 0 chr3 9665193 9665240 -208371918 + (TG)n Simple_repeat Simple_repeat 2 48 0 249 340 156 21 chr3 9665466 9665607 -208371551 - MER5A DNA MER1_type 0 189 30 735 211 149 0 chr3 9665611 9665772 -208371386 - MER5A DNA MER1_type 0 189 5 449 290 158 6 chr3 9665906 9666089 -208371069 - MIR SINE MIR -32 230 20 592 169 128 12 chr3 9666100 9666272 -208370886 - L1MA7 LINE L1 -2 6289 6098 196 267 0 33 chr3 9666339 9666399 -208370759 - L2 LINE L2 -218 3054 2997 26 74 0 0 chr3 9667715 9667769 -208369389 + AT_rich Low_complexity Low_complexity 1 54 0 3179 71 7 0 chr3 9667953 9668378 -208368780 - L1PA10 LINE L1 0 6168 5741 989 93 42 3 chr3 9668379 9668571 -208368587 + L1P4 LINE L1 5254 5430 -738 297 0 0 0 chr3 9668745 9668778 -208368380 + (TG)n Simple_repeat Simple_repeat 2 34 0 800 230 0 0 chr3 9669222 9669387 -208367771 + FRAM SINE Alu 1 164 -12 351 298 132 38 chr3 9669515 9670062 -208367096 - L1ME4a LINE L1 -204 5917 5320 35 78 0 0 chr3 9670084 9670161 -208366997 + AT_rich Low_complexity Low_complexity 1 77 0 374 253 24 0 chr3 9671095 9671178 -208365980 + L3 LINE CR1 1393 1477 -100 218 262 0 0 chr3 9671367 9671409 -208365749 + MIR SINE MIR 78 119 -89 2270 120 0 0 chr3 9671413 9671721 -208365437 - AluSg SINE Alu -2 308 1 2542 198 2 10 chr3 9671926 9672416 -208364742 - MER66B LTR ERV1 0 486 1 1158 161 55 0 chr3 9672773 9672919 -208364239 - L1MA9 LINE L1 -2 6310 6145 234 62 0 0 chr3 9672919 9672951 -208364207 + (TG)n Simple_repeat Simple_repeat 1 32 0 1158 161 55 0 chr3 9672951 9673040 -208364118 - L1MA9 LINE L1 -167 6145 6062 1675 93 4 39 chr3 9673076 9673333 -208363825 + L1PA6 LINE L1 5907 6154 0 249 33 0 0 chr3 9673594 9673624 -208363534 + (TAA)n Simple_repeat Simple_repeat 1 30 0 285 258 89 57 chr3 9673647 9673771 -208363387 - MIR SINE MIR -44 218 91 32510 38 0 0 chr3 9674056 9678968 -208358190 - L1PA3 LINE L1 -3 6152 1239 313 354 31 15 chr3 9678968 9679098 -208358060 + LTR67 LTR ERVL 110 241 -316 315 284 9 0 chr3 9679229 9679338 -208357820 + LTR67 LTR ERVL 435 544 -13 318 50 0 0 chr3 9679804 9679844 -208357314 + (ATG)n Simple_repeat Simple_repeat 2 41 0 206 338 188 6 chr3 9679853 9680013 -208357145 - MIR SINE MIR -10 252 64 336 200 0 0 chr3 9681356 9681436 -208355722 + (TA)n Simple_repeat Simple_repeat 2 81 0 434 287 54 0 chr3 9682285 9682414 -208354744 - MIR SINE MIR -68 194 59 803 209 70 0 chr3 9684071 9684243 -208352915 + MER5A DNA MER1_type 4 187 -2 305 258 281 6 chr3 9684274 9684452 -208352706 + MIR SINE MIR 34 260 -2 645 304 25 21 chr3 9684727 9684964 -208352194 - LTR33 LTR ERVL -239 282 45 629 179 172 13 chr3 9685522 9685673 -208351485 + FRAM SINE Alu 2 176 0 290 317 63 0 chr3 9685766 9685908 -208351250 + MIR SINE MIR 55 205 -57 260 336 69 8 chr3 9685970 9686101 -208351057 - MIR SINE MIR 0 262 124 208 360 0 20 chr3 9686641 9686741 -208350417 - MIR SINE MIR -66 142 45 2432 82 0 28 chr3 9688141 9688459 -208348699 + AluSc SINE Alu 1 309 0 235 258 45 0 chr3 9688575 9688664 -208348494 + T-rich Low_complexity Low_complexity 4 96 0 288 0 0 0 chr3 9689674 9689706 -208347452 + (CA)n Simple_repeat Simple_repeat 2 33 0 469 305 97 26 chr3 9690343 9690838 -208346320 - L1ME LINE L1 -378 5784 5255 510 298 94 12 chr3 9691134 9691305 -208345853 + MIR SINE MIR 11 195 -67 368 314 66 62 chr3 9691450 9691547 -208345611 - L1ME LINE L1 -1306 4840 4745 1388 227 14 7 chr3 9691547 9691842 -208345316 - AluJo SINE Alu -15 297 1 368 314 66 62 chr3 9691842 9692778 -208344380 - L1ME LINE L1 -1401 4745 3803 338 275 169 38 chr3 9692797 9692957 -208344201 - MLT1A1 LTR MaLR 0 549 369 21 0 0 0 chr3 9693643 9693664 -208343494 + AT_rich Low_complexity Low_complexity 1 21 0 877 163 0 6 chr3 9693675 9693841 -208343317 - L1MA10 LINE L1 -3 6331 6167 710 199 8 0 chr3 9693897 9694028 -208343130 - FLAM_C SINE Alu -1 132 1 207 350 48 10 chr3 9694299 9694402 -208342756 - MIR3 SINE MIR -1 207 101 322 336 28 28 chr3 9695283 9695426 -208341732 - MIR3 SINE MIR -61 147 5 260 363 44 0 chr3 9696261 9696374 -208340784 + L2 LINE L2 3155 3272 0 396 298 29 41 chr3 9697072 9697243 -208339915 - MLT1J2 LTR MaLR -3 447 279 474 252 9 0 chr3 9697444 9697555 -208339603 + FLAM_A SINE Alu 16 127 -15 217 299 13 0 chr3 9698047 9698124 -208339034 - L3b LINE CR1 -325 1258 1181 442 244 25 44 chr3 9699021 9699181 -208337977 + MER103 DNA DNA 8 164 -2 263 378 61 6 chr3 9699264 9699444 -208337714 - L3 LINE CR1 -13 1564 1375 2213 101 3 0 chr3 9701236 9701524 -208335634 - AluSg SINE Alu -21 289 1 314 308 140 0 chr3 9702941 9703048 -208334110 - L2 LINE L2 -1 3312 3191 1685 191 62 0 chr3 9703277 9703602 -208333556 - MLT1A1 LTR MaLR -20 345 1 602 262 107 5 chr3 9703868 9704055 -208333103 + MIR SINE MIR 56 261 -1 242 284 30 0 chr3 9704970 9705037 -208332121 - MIR SINE MIR -66 142 74 419 248 17 26 chr3 9705280 9705397 -208331761 + MIR SINE MIR 45 160 -102 264 305 0 0 chr3 9705410 9705469 -208331689 - L2 LINE L2 0 3272 3214 264 250 89 27 chr3 9705647 9705759 -208331399 + MIR SINE MIR 84 202 -60 1985 116 0 31 chr3 9706009 9706331 -208330827 - AluSx SINE Alu 0 313 1 24 32 0 0 chr3 9706584 9706615 -208330543 + AT_rich Low_complexity Low_complexity 1 31 0 1952 131 7 10 chr3 9707096 9707394 -208329764 + AluSx SINE Alu 1 297 -15 200 262 98 0 chr3 9708937 9708998 -208328160 - MIR SINE MIR -116 146 80 2084 142 3 0 chr3 9709827 9710138 -208327020 - AluSx SINE Alu 0 312 1 192 194 0 0 chr3 9710165 9710196 -208326962 + MIR SINE MIR 120 150 -58 281 339 34 17 chr3 9710817 9710935 -208326223 + MIR SINE MIR 34 143 -65 710 254 0 44 chr3 9711200 9711381 -208325777 + MER5B DNA MER1_type 1 173 -5 237 98 0 0 chr3 9712133 9712174 -208324984 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 826 337 78 20 chr3 9712372 9712862 -208324296 - L3 LINE CR1 -3 1574 1057 21 57 0 0 chr3 9712954 9712989 -208324169 + AT_rich Low_complexity Low_complexity 1 35 0 320 284 35 30 chr3 9713556 9713725 -208323433 - L1ME LINE L1 -295 5826 5657 2079 127 0 0 chr3 9713969 9714245 -208322913 + AluSx SINE Alu 1 276 -36 752 18 9 28 chr3 9714253 9714362 -208322796 + (GAAA)n Simple_repeat Simple_repeat 2 108 0 616 284 60 18 chr3 9714485 9714816 -208322342 - L1ME4a LINE L1 -157 5964 5620 26 30 0 0 chr3 9715300 9715333 -208321825 + AT_rich Low_complexity Low_complexity 1 33 0 388 337 61 6 chr3 9716891 9717072 -208320086 + MIR SINE MIR 32 222 -40 274 294 25 68 chr3 9717987 9718150 -208319008 + MER117 DNA MER1_type 1 156 -41 342 302 40 16 chr3 9718528 9718654 -208318504 + L2 LINE L2 3158 3286 -27 210 300 0 0 chr3 9718694 9718744 -208318414 - L2 LINE L2 -82 3231 3182 2270 119 0 0 chr3 9719567 9719878 -208317280 - AluSx SINE Alu -1 311 1 211 302 157 34 chr3 9721436 9721704 -208315454 - L2 LINE L2 -630 2684 2384 281 278 26 26 chr3 9721759 9721874 -208315284 - MER103 DNA DNA -46 120 6 1932 232 58 109 chr3 9722312 9722481 -208314677 + LTR41 LTR ERVL 1 177 -596 2062 108 0 51 chr3 9722481 9722832 -208314326 - AluSx SINE Alu 0 312 1 1932 232 58 109 chr3 9722832 9723468 -208313690 + LTR41 LTR ERVL 177 765 -8 328 223 28 137 chr3 9723562 9723773 -208313385 - L1ME LINE L1 -296 5825 5638 471 332 55 14 chr3 9724677 9724897 -208312261 - MIR SINE MIR 0 262 34 24 32 0 0 chr3 9726899 9726930 -208310228 + AT_rich Low_complexity Low_complexity 1 31 0 2177 103 0 0 chr3 9726931 9727213 -208309945 - AluSc SINE Alu -27 282 1 269 246 0 0 chr3 9728538 9728607 -208308551 + (TTCA)n Simple_repeat Simple_repeat 4 72 0 216 269 58 39 chr3 9728998 9729102 -208308056 + MIR SINE MIR 108 213 -49 408 200 36 9 chr3 9729102 9729212 -208307946 - L1MA10 LINE L1 -3 6331 6219 5108 250 63 21 chr3 9729323 9731899 -208305259 - L1ME1 LINE L1 -281 5954 3277 * 43273 44 5 2 chr3 9731878 9738014 -208299144 - L1PA4 LINE L1 0 6224 70 2396 216 141 17 chr3 9738013 9738845 -208298313 - L1ME1 LINE L1 -2897 3318 2384 * 356 113 0 0 chr3 9738851 9738913 -208298245 - L1ME1 LINE L1 -4143 2253 2192 2088 262 74 15 chr3 9738919 9739526 -208297632 - L1ME1 LINE L1 -5649 747 96 188 0 0 69 chr3 9739526 9739555 -208297603 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2088 262 74 15 chr3 9739555 9739611 -208297547 - L1ME1 LINE L1 -6300 96 45 519 350 48 27 chr3 9739832 9740163 -208296995 - MLT1J2 LTR MaLR 0 450 113 289 250 0 24 chr3 9740678 9740762 -208296396 + MIR SINE MIR 166 247 -15 1123 144 20 16 chr3 9740962 9741212 -208295946 - L1MA4A LINE L1 -56 6247 6017 412 308 151 0 chr3 9741472 9741657 -208295501 + MIR SINE MIR 50 262 0 239 250 65 28 chr3 9741758 9741866 -208295292 + MIR SINE MIR 113 224 -38 186 43 0 0 chr3 9741992 9742015 -208295143 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 2117 111 7 3 chr3 9742077 9742375 -208294783 + AluSx SINE Alu 1 299 -13 1885 171 3 0 chr3 9742386 9742679 -208294479 + AluSg SINE Alu 1 294 -16 191 365 24 0 chr3 9744588 9744673 -208292485 - L2 LINE L2 -47 3225 3139 225 287 98 0 chr3 9744820 9744835 -208292323 - L1MA10 LINE L1 -3 6331 6317 911 233 93 85 chr3 9744835 9744891 -208292267 - L1ME2 LINE L1 -8 6154 6100 198 103 0 0 chr3 9744891 9744920 -208292238 + (TG)n Simple_repeat Simple_repeat 2 30 0 911 233 93 85 chr3 9744920 9745390 -208291768 - L1ME2 LINE L1 -62 6100 5617 446 284 57 7 chr3 9745916 9746057 -208291101 - MIR SINE MIR -18 244 97 24 0 0 0 chr3 9746146 9746170 -208290988 + AT_rich Low_complexity Low_complexity 1 24 0 2356 320 127 25 chr3 9747236 9748888 -208288270 + L2 LINE L2 47 1865 -1449 190 289 134 35 chr3 9748976 9749118 -208288040 + L2 LINE L2 3158 3313 0 423 250 62 0 chr3 9749465 9749577 -208287581 - MIR SINE MIR -142 120 2 608 197 142 0 chr3 9750304 9750431 -208286727 + FRAM SINE Alu 2 146 -30 403 211 65 16 chr3 9750492 9750615 -208286543 + MER104 DNA Tc2 40 168 -12 1064 190 23 31 chr3 9750988 9751246 -208285912 - MLT1A1 LTR MaLR 0 365 110 1968 138 0 52 chr3 9752133 9752458 -208284700 - AluJb SINE Alu -4 308 1 195 379 35 0 chr3 9752849 9752936 -208284222 + L3 LINE CR1 1468 1557 -20 438 298 61 33 chr3 9753631 9753812 -208283346 + MIR SINE MIR 12 197 -65 246 83 0 0 chr3 9753875 9753911 -208283247 - Alu SINE Alu -94 81 46 1769 173 3 22 chr3 9754000 9754318 -208282840 - AluJo SINE Alu 0 312 1 220 167 0 0 chr3 9754639 9754681 -208282477 + MER5B DNA MER1_type 1 42 -136 1401 211 82 39 chr3 9754846 9755286 -208281872 - MLT1C LTR MaLR -8 459 1 283 272 37 0 chr3 9755297 9755378 -208281780 + MIR SINE MIR 130 213 -49 375 248 20 0 chr3 9755699 9755800 -208281358 - Charlie8 DNA MER1_type -2238 179 77 535 262 0 14 chr3 9755817 9755962 -208281196 - MER63 DNA MER1_type -289 773 5 310 294 54 76 chr3 9756141 9756343 -208280815 - MIR SINE MIR -56 206 5 250 185 0 0 chr3 9757212 9757266 -208279892 + L1MC4 LINE L1 7986 8039 -3 23 54 0 0 chr3 9757301 9757338 -208279820 + AT_rich Low_complexity Low_complexity 1 37 0 659 326 83 42 chr3 9757344 9757521 -208279637 - L2 LINE L2 -511 2803 2635 2384 42 0 11 chr3 9757521 9757838 -208279320 + AluY SINE Alu 1 314 0 659 326 83 42 chr3 9757838 9757996 -208279162 - L2 LINE L2 -679 2635 2453 23 0 0 0 chr3 9757997 9758020 -208279138 + AT_rich Low_complexity Low_complexity 1 23 0 235 204 0 0 chr3 9758137 9758191 -208278967 - L1MC4 LINE L1 -3 8039 7986 559 289 17 8 chr3 9758192 9758427 -208278731 - L1MC4 LINE L1 -141 7901 7665 367 340 102 12 chr3 9759426 9759758 -208277400 - LTR16A LTR ERVL -88 362 1 259 359 90 12 chr3 9759793 9759960 -208277198 + MIR SINE MIR 22 201 -61 309 135 0 0 chr3 9760014 9760066 -208277092 + (TTA)n Simple_repeat Simple_repeat 3 54 0 291 291 60 82 chr3 9760102 9760236 -208276922 - L2 LINE L2 -1 3312 3182 234 189 0 84 chr3 9760238 9760333 -208276825 - L1MC4 LINE L1 -1347 6695 6609 2984 310 76 32 chr3 9760334 9762102 -208275056 - L2 LINE L2 -149 3164 1307 242 333 51 51 chr3 9762205 9762322 -208274836 + MIR3 SINE MIR 44 160 -48 260 157 8 164 chr3 9762361 9762495 -208274663 + MER112 DNA MER1_type 45 157 -103 239 274 95 0 chr3 9762807 9762902 -208274256 + MER102a DNA MER1_type 80 183 -147 238 276 0 31 chr3 9762902 9763000 -208274158 + MER102a DNA MER1_type 236 330 0 300 111 0 0 chr3 9764174 9764228 -208272930 + (TG)n Simple_repeat Simple_repeat 2 55 0 744 249 57 75 chr3 9764802 9765276 -208271882 + MLT1C LTR MaLR 6 626 0 468 118 13 0 chr3 9766550 9766626 -208270532 + MADE1 DNA Mariner 4 80 0 213 180 0 0 chr3 9766939 9766989 -208270169 + CT-rich Low_complexity Low_complexity 3 52 0 4138 142 7 7 chr3 9768518 9769217 -208267941 + L1PA16 LINE L1 5392 6090 -76 1333 272 49 32 chr3 9769341 9769834 -208267324 - L1ME1 LINE L1 -44 6122 5622 2536 96 53 2 chr3 9771902 9772296 -208264862 - L1MA1 LINE L1 0 6302 5889 352 317 49 28 chr3 9772388 9772530 -208264628 - MIR3 SINE MIR -63 145 1 610 187 0 0 chr3 9772759 9772882 -208264276 - L1M3 LINE L1 -677 5491 5369 1422 138 6 99 chr3 9772882 9773216 -208263942 + L1MA10 LINE L1 6018 6320 -14 304 311 82 8 chr3 9773648 9773770 -208263388 + L2 LINE L2 3141 3271 -1 230 317 20 20 chr3 9773875 9773976 -208263182 + CT-rich Low_complexity Low_complexity 3 103 0 752 290 143 35 chr3 9774059 9774700 -208262458 - L2 LINE L2 -32 3281 2563 2367 61 0 42 chr3 9774819 9775132 -208262026 - AluY SINE Alu -11 300 1 241 254 56 0 chr3 9775811 9775882 -208261276 + MER103 DNA DNA 26 100 -66 184 333 51 26 chr3 9776173 9776251 -208260907 - MIR SINE MIR -113 149 70 393 315 112 44 chr3 9776469 9776720 -208260438 + L3 LINE CR1 787 1054 -523 835 196 0 0 chr3 9777746 9777894 -208259264 + FRAM SINE Alu 1 148 -28 249 108 0 0 chr3 9777896 9777933 -208259225 + (CATA)n Simple_repeat Simple_repeat 1 37 0 1621 140 42 30 chr3 9778444 9778780 -208258378 - L1MA9 LINE L1 0 6312 5973 829 309 64 40 chr3 9779285 9779786 -208257372 - LTR33 LTR ERVL -2 519 7 * 2218 112 27 25 chr3 9779783 9780149 -208257009 - THE1C LTR MaLR -8 367 1 324 339 97 27 chr3 9780452 9780638 -208256520 - L2 LINE L2 -643 2671 2473 227 333 43 0 chr3 9781766 9781859 -208255299 + MLT1I LTR MaLR 55 151 -258 831 250 4 44 chr3 9782031 9782259 -208254899 - MER58A DNA MER1_type -5 219 1 268 161 81 16 chr3 9782259 9782319 -208254839 + MLT1I LTR MaLR 342 405 -4 1977 141 0 0 chr3 9782881 9783171 -208253987 - AluY SINE Alu -21 290 1 2536 121 5 3 chr3 9784116 9784488 -208252670 - THE1C LTR MaLR 0 375 3 9413 119 40 48 chr3 9784490 9784681 -208252477 - THE1C-int LTR MaLR 0 1580 1389 2055 121 3 0 chr3 9784681 9784963 -208252195 + AluSq SINE Alu 21 303 -10 9413 119 40 48 chr3 9784963 9786365 -208250793 - THE1C-int LTR MaLR -191 1389 1 2506 106 3 5 chr3 9786368 9786737 -208250421 - THE1C LTR MaLR -7 368 1 1983 144 34 0 chr3 9786992 9787162 -208249996 - AluSx SINE Alu -9 303 117 201 39 0 0 chr3 9787162 9787188 -208249970 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1983 144 34 0 chr3 9787188 9787308 -208249850 - AluSx SINE Alu -195 117 3 451 309 121 12 chr3 9787436 9787685 -208249473 - MLT1I LTR MaLR -28 381 106 1321 167 0 26 chr3 9787973 9788200 -208248958 + AluJb SINE Alu 87 307 -5 312 273 11 23 chr3 9789329 9789417 -208247741 - L2 LINE L2 -21 3292 3206 3687 165 14 26 chr3 9789446 9790216 -208246942 + L1MA7 LINE L1 5530 6290 -1 1669 275 29 13 chr3 9790568 9791092 -208246066 - MLT1F LTR MaLR -10 532 1 425 302 213 22 chr3 9792669 9792894 -208244264 - MLT1K LTR MaLR -287 301 34 314 329 27 32 chr3 9793942 9794132 -208243026 + MIR SINE MIR 2 190 -55 220 259 49 25 chr3 9795733 9795814 -208241344 + MIR SINE MIR 124 206 -56 248 258 75 33 chr3 9795877 9795997 -208241161 - L3b LINE CR1 -171 1412 1288 413 258 158 0 chr3 9796101 9796265 -208240893 - MIR SINE MIR -10 252 63 1027 173 14 133 chr3 9796874 9796995 -208240163 - MER31A LTR ERV1 -135 350 216 1772 159 0 20 chr3 9796995 9797290 -208239868 + AluSx SINE Alu 4 292 -20 1027 173 14 133 chr3 9797290 9797567 -208239591 - MER31A LTR ERV1 -269 216 11 437 332 24 67 chr3 9797821 9798074 -208239084 + MIR SINE MIR 6 247 -15 435 201 135 91 chr3 9799261 9799567 -208237591 + MER39 LTR ERV1 1 456 -251 1452 224 7 0 chr3 9799582 9799863 -208237295 - AluJo SINE Alu -29 283 1 483 234 50 66 chr3 9799873 9800144 -208237014 + MER39 LTR ERV1 441 560 -5 493 200 104 7 chr3 9800148 9800283 -208236875 - L1MC5 LINE L1 -102 7859 7712 23 0 0 0 chr3 9800327 9800350 -208236808 + AT_rich Low_complexity Low_complexity 1 23 0 519 145 8 113 chr3 9800463 9800587 -208236571 + FLAM_A SINE Alu 6 116 -26 347 239 59 108 chr3 9800617 9801006 -208236152 - L1MC5 LINE L1 -419 7542 7173 182 36 0 36 chr3 9801140 9801168 -208235990 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1710 137 99 4 chr3 9801176 9801439 -208235719 - AluSx SINE Alu -24 288 1 278 326 139 0 chr3 9801519 9801605 -208235553 + L2 LINE L2 3121 3218 -54 1708 95 110 215 chr3 9801628 9802164 -208234994 + LTR12 LTR ERV1 1 480 -234 247 270 0 0 chr3 9802187 9802250 -208234908 + (TGAA)n Simple_repeat Simple_repeat 4 66 0 2220 226 78 4 chr3 9802304 9802831 -208234327 - MLT1F1 LTR MaLR -1 566 1 282 343 0 40 chr3 9802947 9803046 -208234112 + MIR SINE MIR 47 141 -67 1742 195 88 19 chr3 9803047 9803478 -208233680 - LOR1b LTR ERV1 0 461 1 413 268 168 11 chr3 9803520 9803710 -208233448 - MIR SINE MIR 0 262 43 365 311 155 0 chr3 9803744 9803905 -208233253 + MER5A DNA MER1_type 4 189 0 496 254 34 40 chr3 9804433 9804610 -208232548 - MER5B DNA MER1_type -2 176 1 937 172 63 34 chr3 9804845 9805113 -208232045 - MER33 DNA MER1_type -1 323 48 2036 127 0 3 chr3 9805638 9805930 -208231228 + AluSx SINE Alu 1 291 -21 1472 160 43 0 chr3 9806044 9806300 -208230858 - L1MC1 LINE L1 -92 6241 5975 1149 102 25 0 chr3 9806813 9806970 -208230188 - AluSc SINE Alu -148 161 1 1108 148 0 6 chr3 9807044 9807227 -208229931 + L1MC1 LINE L1 5860 6041 -292 193 276 150 39 chr3 9807286 9807413 -208229745 - MER5A DNA MER1_type 0 189 49 204 369 15 0 chr3 9808594 9808659 -208228499 - L2 LINE L2 0 3272 3207 1788 170 10 0 chr3 9808869 9809169 -208227989 + AluJb SINE Alu 1 303 -9 228 67 0 0 chr3 9809180 9809210 -208227948 + (CA)n Simple_repeat Simple_repeat 2 31 0 858 190 52 82 chr3 9809288 9809556 -208227602 - ORSL DNA AcHobo 0 275 16 2297 200 138 30 chr3 9809603 9810313 -208226845 - LTR48 LTR ERV1 0 787 1 673 257 137 8 chr3 9810333 9810631 -208226527 - MLT1C LTR MaLR -6 461 59 1641 213 52 54 chr3 9811674 9812176 -208224982 - MLT1D LTR MaLR -2 503 3 189 375 81 21 chr3 9813691 9813926 -208223232 + L2 LINE L2 2806 3054 -218 306 325 66 13 chr3 9814114 9814265 -208222893 + Charlie8 DNA MER1_type 107 265 -2152 286 255 142 9 chr3 9814896 9815002 -208222156 + L2 LINE L2 3138 3257 -15 650 207 67 56 chr3 9815324 9815503 -208221655 + L1MEc LINE L1 44 224 -6172 1921 240 27 34 chr3 9815506 9815734 -208221424 + L1ME1 LINE L1 5371 5599 -579 3278 163 28 36 chr3 9815734 9815845 -208221313 + L1MB3 LINE L1 5513 5623 -560 2181 136 7 0 chr3 9815845 9816155 -208221003 + AluSx SINE Alu 1 312 0 3278 163 28 36 chr3 9816155 9816717 -208220441 + L1MB3 LINE L1 5623 6181 -2 1921 240 27 34 chr3 9816717 9817339 -208219819 + L1ME1 LINE L1 5599 6177 -1 1667 51 0 5 chr3 9818230 9818454 -208218704 - AluY SINE Alu 0 309 87 283 237 40 26 chr3 9818607 9818683 -208218475 + L2 LINE L2 3179 3255 -17 332 253 61 0 chr3 9819197 9819296 -208217862 + MIR SINE MIR 158 262 0 189 294 199 41 chr3 9819561 9819707 -208217451 - MIR3 SINE MIR -10 198 30 1557 233 85 21 chr3 9819750 9820187 -208216971 - MLT1C LTR MaLR -2 465 1 22 56 0 0 chr3 9820187 9820223 -208216935 + AT_rich Low_complexity Low_complexity 1 36 0 482 252 18 0 chr3 9820532 9820643 -208216515 - MER81 DNA DNA -1 113 1 275 303 50 82 chr3 9821012 9821202 -208215956 - MER5B DNA MER1_type -5 173 1 221 100 50 0 chr3 9821344 9821384 -208215774 + (CATA)n Simple_repeat Simple_repeat 2 43 0 557 280 42 26 chr3 9822728 9822921 -208214237 - MIR SINE MIR -8 254 59 22 0 0 0 chr3 9823520 9823542 -208213616 + AT_rich Low_complexity Low_complexity 1 22 0 288 152 0 0 chr3 9824083 9824129 -208213029 + MADE1 DNA Mariner 1 46 -34 691 266 138 9 chr3 9824148 9824366 -208212792 + MIR SINE MIR 17 262 0 240 224 12 106 chr3 9825550 9825635 -208211523 - MIR SINE MIR -97 165 89 21 0 0 0 chr3 9825679 9825700 -208211458 + AT_rich Low_complexity Low_complexity 1 21 0 802 218 63 11 chr3 9825730 9825904 -208211254 + MER5A DNA MER1_type 7 189 0 21 0 0 0 chr3 9826171 9826192 -208210966 + AT_rich Low_complexity Low_complexity 1 21 0 181 340 0 0 chr3 9826791 9826838 -208210320 + L2 LINE L2 3223 3269 -3 2201 105 0 3 chr3 9827132 9827426 -208209732 - AluY SINE Alu -18 293 1 323 283 22 0 chr3 9827506 9827598 -208209560 + MER5A DNA MER1_type 13 106 -83 1956 140 13 3 chr3 9827624 9827924 -208209234 + AluJb SINE Alu 1 303 -9 1335 241 52 31 chr3 9828032 9828476 -208208682 - L1ME1 LINE L1 -88 6078 5626 2816 209 55 40 chr3 9828483 9829242 -208207916 + MER21B LTR ERV1 1 857 -6 3167 239 78 41 chr3 9829301 9830443 -208206715 - L1MEc LINE L1 -5176 1220 37 253 293 27 0 chr3 9830585 9830660 -208206498 - L3 LINE CR1 -681 896 820 634 176 9 0 chr3 9830692 9830800 -208206358 - FLAM_A SINE Alu -32 110 2 484 313 178 29 chr3 9830802 9831150 -208206008 - L3 LINE CR1 -747 830 431 3476 209 35 26 chr3 9832261 9833095 -208204063 - L1MA9 LINE L1 -208 6104 5264 715 230 51 55 chr3 9833908 9834125 -208203033 + MER58A DNA MER1_type 1 216 -8 409 347 7 0 chr3 9834256 9834403 -208202755 - MIR3 SINE MIR -40 168 21 21 36 0 0 chr3 9835118 9835146 -208202012 + AT_rich Low_complexity Low_complexity 1 28 0 1324 137 140 47 chr3 9835416 9835737 -208201421 - L1MA8 LINE L1 -1 6290 5940 188 231 0 0 chr3 9835934 9835973 -208201185 - L2 LINE L2 -5 3308 3270 1971 158 49 6 chr3 9836037 9836386 -208200772 - THE1B LTR MaLR 0 364 1 200 264 14 111 chr3 9836574 9836718 -208200440 - L2 LINE L2 -287 3026 2897 278 306 75 50 chr3 9836775 9836935 -208200223 - L2 LINE L2 -527 2787 2624 211 298 125 17 chr3 9837177 9837305 -208199853 - MIR SINE MIR -63 145 11 29 70 0 0 chr3 9837833 9837890 -208199268 + AT_rich Low_complexity Low_complexity 1 57 0 25 31 0 0 chr3 9838762 9838794 -208198364 + AT_rich Low_complexity Low_complexity 1 32 0 2414 239 85 27 chr3 9839217 9840984 -208196174 - L1ME1 LINE L1 -4 6231 4367 286 169 68 40 chr3 9841074 9841222 -208195936 + (ATATG)n Simple_repeat Simple_repeat 3 154 0 587 231 92 35 chr3 9841245 9841527 -208195631 - L1ME1 LINE L1 -1968 4247 3950 293 80 0 20 chr3 9841536 9841586 -208195572 + (TC)n Simple_repeat Simple_repeat 2 50 0 403 307 28 39 chr3 9841619 9841798 -208195360 - L1ME1 LINE L1 -6040 356 180 276 30 0 0 chr3 9842278 9842301 -208194857 + (TG)n Simple_repeat Simple_repeat 1 56 0 276 30 0 0 chr3 9842301 9842334 -208194824 + (TG)n Simple_repeat Simple_repeat 2 34 0 1814 175 0 0 chr3 9842359 9842644 -208194514 - AluSx SINE Alu -27 285 1 4562 62 10 0 chr3 9845406 9845991 -208191167 - LTR10C LTR ERV1 0 591 1 1674 209 11 15 chr3 9846414 9846789 -208190369 + MLT1A1 LTR MaLR 3 359 -6 382 320 128 45 chr3 9847163 9847500 -208189658 + MLT1J2 LTR MaLR 80 444 -6 573 244 124 10 chr3 9848120 9848321 -208188837 - MIR SINE MIR -2 260 37 300 308 75 38 chr3 9848554 9848713 -208188445 - MIR SINE MIR -51 211 47 752 134 0 47 chr3 9848785 9848912 -208188246 + HERVK LTR ERVK 5384 5504 -1739 310 109 36 18 chr3 9848902 9848957 -208188201 + Harlequin LTR ERV1 557 612 -6284 * 21 0 0 0 chr3 9850296 9850317 -208186841 + AT_rich Low_complexity Low_complexity 1 21 0 475 289 69 23 chr3 9850695 9850868 -208186290 - MLT1J1 LTR MaLR -2 444 264 230 28 0 56 chr3 9850881 9850917 -208186241 + (TTTTA)n Simple_repeat Simple_repeat 5 38 0 2007 143 19 19 chr3 9850924 9851287 -208185871 - L1PB1 LINE L1 -8 6143 5781 310 308 0 11 chr3 9851291 9851382 -208185776 - L1MC4 LINE L1 -1339 6703 6614 4165 158 8 1 chr3 9851383 9852644 -208184514 - L1P5 LINE L1 -360 5791 4523 7741 207 12 6 chr3 9852644 9854373 -208182785 + L1P5 LINE L1 2777 4514 -1632 644 348 43 3 chr3 9854373 9854655 -208182503 - MLT1J1 LTR MaLR -153 293 1 351 335 48 44 chr3 9855598 9855846 -208181312 - MLT1K LTR MaLR -14 574 326 26 30 0 0 chr3 9855876 9855909 -208181249 + AT_rich Low_complexity Low_complexity 1 33 0 1293 269 81 9 chr3 9855921 9856356 -208180802 - LTR33 LTR ERVL -19 502 37 183 366 0 14 chr3 9856898 9856969 -208180189 + L2 LINE L2 3201 3270 -2 22 35 0 0 chr3 9858592 9858621 -208178537 + AT_rich Low_complexity Low_complexity 1 29 0 1731 156 3 26 chr3 9859223 9859530 -208177628 + AluJb SINE Alu 1 300 -12 23 33 0 0 chr3 9860898 9860928 -208176230 + AT_rich Low_complexity Low_complexity 1 30 0 400 287 147 7 chr3 9860963 9861113 -208176045 - MIR SINE MIR -44 218 48 838 246 88 24 chr3 9861267 9861564 -208175594 + MER5C DNA MER1_type 7 322 -2 441 0 0 0 chr3 9862320 9862369 -208174789 + (TG)n Simple_repeat Simple_repeat 2 50 0 2075 98 18 0 chr3 9862372 9862649 -208174509 - AluSx SINE Alu -30 282 1 219 211 19 0 chr3 9862882 9862934 -208174224 - L2 LINE L2 -15 3257 3205 316 226 29 78 chr3 9863052 9863091 -208174067 - Charlie7 DNA MER1_type -2515 97 58 1695 154 49 35 chr3 9863091 9863461 -208173697 + THE1C LTR MaLR 1 375 0 316 226 29 78 chr3 9863461 9863523 -208173635 - Charlie7 DNA MER1_type -2554 58 1 6953 56 11 0 chr3 9863579 9864558 -208172600 + L1PA7 LINE L1 5166 6154 0 726 179 12 49 chr3 9864739 9864901 -208172257 - MER58B DNA MER1_type 0 341 186 390 286 191 0 chr3 9865064 9865211 -208171947 + MER5A DNA MER1_type 13 187 -2 189 308 103 0 chr3 9866097 9866175 -208170983 + MIR SINE MIR 98 183 -79 23 0 0 0 chr3 9866338 9866361 -208170797 + AT_rich Low_complexity Low_complexity 1 23 0 246 289 0 0 chr3 9866686 9866738 -208170420 + L2 LINE L2 3209 3260 -12 188 424 11 5 chr3 9867184 9867368 -208169790 + L2 LINE L2 2177 2361 -953 307 268 22 94 chr3 9867422 9867560 -208169598 - L1MC4 LINE L1 -1307 6735 6608 196 368 40 0 chr3 9867655 9867731 -208169427 + L2 LINE L2 3235 3313 0 13829 143 36 16 chr3 9867961 9870329 -208166829 + Tigger1 DNA MER2_type 1 2417 -1 694 321 178 33 chr3 9870431 9871076 -208166082 - L2 LINE L2 -1 3312 2575 536 244 179 26 chr3 9871079 9871235 -208165923 + MER5A DNA MER1_type 7 186 -3 696 315 68 0 chr3 9871258 9871537 -208165621 - L2 LINE L2 -747 2567 2270 21 36 0 0 chr3 9873141 9873169 -208163989 + AT_rich Low_complexity Low_complexity 1 28 0 207 256 61 37 chr3 9874585 9874667 -208162491 + MIR SINE MIR 120 203 -59 326 282 107 10 chr3 9874785 9874888 -208162270 + MIR SINE MIR 37 149 -113 26 52 0 17 chr3 9876648 9876680 -208160478 + AT_rich Low_complexity Low_complexity 1 33 -24 2074 126 0 0 chr3 9876680 9876966 -208160192 - AluSx SINE Alu -26 286 1 26 52 0 17 chr3 9876966 9876991 -208160167 + AT_rich Low_complexity Low_complexity 33 57 0 192 77 0 0 chr3 9878035 9878061 -208159097 + (A)n Simple_repeat Simple_repeat 1 26 0 194 0 39 0 chr3 9878815 9878841 -208158317 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 866 173 0 0 chr3 9878846 9878985 -208158173 - AluY SINE Alu -26 285 147 292 309 49 16 chr3 9879169 9879292 -208157866 + MIR SINE MIR 17 143 -119 1531 169 81 0 chr3 9879627 9879888 -208157270 + AluJo SINE Alu 3 284 -28 186 143 0 0 chr3 9879892 9879927 -208157231 + (CAA)n Simple_repeat Simple_repeat 2 36 0 231 228 35 0 chr3 9880035 9880092 -208157066 - MIR SINE MIR -66 142 84 201 39 0 0 chr3 9880143 9880169 -208156989 + (TG)n Simple_repeat Simple_repeat 1 26 0 2240 110 3 0 chr3 9880221 9880530 -208156628 + AluSg SINE Alu 1 310 0 599 287 74 10 chr3 9880852 9881054 -208156104 - L2 LINE L2 -1 3312 3098 193 381 31 21 chr3 9881281 9881378 -208155780 - MIR SINE MIR -90 118 21 646 324 42 0 chr3 9881470 9881683 -208155475 + MIR SINE MIR 28 249 -13 1664 279 107 34 chr3 9883019 9883693 -208153465 - MER21B LTR ERV1 -124 739 17 194 350 43 14 chr3 9884536 9884676 -208152482 + L2 LINE L2 1876 2019 -1295 579 195 47 0 chr3 9886007 9886309 -208150849 + (TA)n Simple_repeat Simple_repeat 1 316 0 515 235 24 0 chr3 9886322 9886488 -208150670 + (TATATG)n Simple_repeat Simple_repeat 5 174 0 391 266 29 0 chr3 9886544 9886717 -208150441 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 * 479 128 45 45 chr3 9886705 9886884 -208150274 + (TA)n Simple_repeat Simple_repeat 2 180 0 2668 229 61 20 chr3 9887456 9888165 -208148993 - L1ME2 LINE L1 -8 6090 5353 431 257 132 21 chr3 9888186 9888494 -208148664 - L1ME2 LINE L1 -3773 2325 2001 209 184 0 13 chr3 9888599 9888675 -208148483 + (TA)n Simple_repeat Simple_repeat 2 76 0 1304 285 69 67 chr3 9888678 9890077 -208147081 - L1ME2 LINE L1 -4319 1942 494 913 99 13 13 chr3 9890544 9890696 -208146462 + (TTTC)n Simple_repeat Simple_repeat 1 152 0 879 198 0 64 chr3 9890810 9891012 -208146146 + MLT1A2 LTR MaLR 21 209 -165 189 74 0 0 chr3 9891047 9891074 -208146084 + (TTTTC)n Simple_repeat Simple_repeat 5 31 0 504 275 39 11 chr3 9891084 9891262 -208145896 + MLT1B LTR MaLR 192 374 0 409 325 27 32 chr3 9891549 9891737 -208145421 - MIR SINE MIR -75 187 1 23 33 0 0 chr3 9892705 9892735 -208144423 + AT_rich Low_complexity Low_complexity 1 30 0 418 38 0 0 chr3 9893095 9893148 -208144010 - L1PA6 LINE L1 0 6154 6102 182 308 115 13 chr3 9893736 9893814 -208143344 - L2 LINE L2 -3 3310 3225 371 287 8 54 chr3 9893953 9894082 -208143076 - L2 LINE L2 -1 3271 3149 210 261 0 0 chr3 9894102 9894148 -208143010 + L2 LINE L2 3264 3309 -4 235 307 53 18 chr3 9894561 9894675 -208142483 - L2 LINE L2 -1307 2007 1890 1937 132 22 0 chr3 9897142 9897415 -208139743 + AluSx SINE Alu 1 279 -33 231 36 0 0 chr3 9897415 9897443 -208139715 + (CA)n Simple_repeat Simple_repeat 1 28 0 267 336 69 8 chr3 9898123 9898254 -208138904 + MIR SINE MIR 124 262 0 291 317 63 0 chr3 9898316 9898458 -208138700 - MIR SINE MIR -57 205 55 625 179 172 13 chr3 9898551 9898702 -208138456 - FRAM SINE Alu 0 176 2 722 304 25 21 chr3 9899259 9899496 -208137662 + LTR33 LTR ERVL 45 282 -239 300 258 281 6 chr3 9899771 9899949 -208137209 - MIR SINE MIR -2 260 34 802 209 70 0 chr3 9899980 9900152 -208137006 - MER5A DNA MER1_type -2 187 4 441 287 54 0 chr3 9901809 9901938 -208135220 + MIR SINE MIR 59 194 -68 336 200 0 0 chr3 9902787 9902867 -208134291 + (TA)n Simple_repeat Simple_repeat 2 81 0 214 338 188 6 chr3 9904209 9904369 -208132789 + MIR SINE MIR 64 252 -10 318 50 0 0 chr3 9904378 9904418 -208132740 + (CAT)n Simple_repeat Simple_repeat 2 41 0 351 276 24 8 chr3 9904884 9905007 -208132151 - LTR67 LTR ERVL -13 544 420 351 354 31 15 chr3 9905125 9905255 -208131903 - LTR67 LTR ERVL -316 241 110 33437 38 4 0 chr3 9905255 9909957 -208127201 + L1PA3 LINE L1 1239 5953 -202 181 275 120 93 chr3 9910573 9910831 -208126327 - L2 LINE L2 -54 3259 2995 367 218 0 32 chr3 9910847 9910971 -208126187 + GA-rich Low_complexity Low_complexity 1 120 0 2095 105 3 3 chr3 9911704 9911989 -208125169 - AluSc SINE Alu -22 287 3 599 195 0 0 chr3 9912807 9912930 -208124228 - L1M3 LINE L1 -677 5491 5369 1450 138 6 99 chr3 9912930 9913264 -208123894 + L1MA10 LINE L1 6018 6320 -14 300 311 82 8 chr3 9913696 9913818 -208123340 + L2 LINE L2 3141 3271 -1 230 317 20 20 chr3 9913923 9914024 -208123134 + CT-rich Low_complexity Low_complexity 3 103 0 727 289 143 35 chr3 9914107 9914748 -208122410 - L2 LINE L2 -32 3281 2563 2172 120 0 0 chr3 9914867 9915167 -208121991 - AluY SINE Alu -11 300 1 210 303 13 13 chr3 9915222 9915298 -208121860 + L2 LINE L2 3188 3263 -9 2429 154 2 28 chr3 9915377 9915800 -208121358 - MSTB1 LTR MaLR -20 412 1 7855 67 22 4 chr3 9917347 9918463 -208118695 + L1P LINE L1 966 2102 -4044 390 222 56 93 chr3 9918468 9918630 -208118528 - MER31-int LTR ERV1 -216 4720 4565 714 130 19 0 chr3 9918646 9918754 -208118404 - MSTB1 LTR MaLR 0 432 323 22 0 0 0 chr3 9920412 9920434 -208116724 + AT_rich Low_complexity Low_complexity 1 22 0 198 265 0 20 chr3 9921080 9921129 -208116029 + L3b LINE CR1 1535 1582 -1 246 347 153 6 chr3 9922368 9922544 -208114614 + MIR SINE MIR 28 229 -33 * 637 265 28 84 chr3 9922524 9922773 -208114385 + MIR SINE MIR 18 252 -10 465 213 32 0 chr3 9923790 9923884 -208113274 + MER5A DNA MER1_type 9 105 -84 1973 126 3 10 chr3 9923901 9924203 -208112955 + AluSx SINE Alu 1 300 -12 1540 236 79 34 chr3 9924323 9924764 -208112394 - MLT1D LTR MaLR -44 461 1 758 296 17 17 chr3 9925247 9925487 -208111671 + MIR SINE MIR 13 252 -10 189 0 0 0 chr3 9925503 9925524 -208111634 + (TTA)n Simple_repeat Simple_repeat 1 21 0 252 0 0 0 chr3 9926388 9926416 -208110742 + (TG)n Simple_repeat Simple_repeat 2 29 0 27 0 0 0 chr3 9926743 9926770 -208110388 + AT_rich Low_complexity Low_complexity 1 27 0 298 175 0 0 chr3 9926892 9926955 -208110203 - MER97c DNA MER1_type? -37 1053 991 716 158 15 8 chr3 9926963 9927096 -208110062 - MER97a DNA MER1_type? -561 333 200 681 256 63 29 chr3 9927108 9927315 -208109843 + MER58A DNA MER1_type 10 223 -1 612 235 60 0 chr3 9927315 9927464 -208109694 - MER97b DNA MER1_type? -848 205 48 198 67 0 0 chr3 9931506 9931517 -208105641 + (TAAAAA)n Simple_repeat Simple_repeat 1 11 -19 5011 45 0 0 chr3 9931517 9932121 -208105037 + L1PA5 LINE L1 5549 6152 -2 198 67 0 0 chr3 9932121 9932139 -208105019 + (TAAAAA)n Simple_repeat Simple_repeat 10 30 0 278 276 0 51 chr3 9932155 9932253 -208104905 + L2 LINE L2 3221 3313 0 256 364 119 7 chr3 9932299 9932442 -208104716 + MIR3 SINE MIR 16 174 -34 233 330 43 0 chr3 9932945 9933039 -208104119 - MIR SINE MIR -91 117 20 585 0 0 0 chr3 9933592 9933657 -208103501 + (TC)n Simple_repeat Simple_repeat 1 65 0 2102 124 36 30 chr3 9933896 9934258 -208102900 + THE1B LTR MaLR 1 364 0 289 308 226 0 chr3 9934542 9934688 -208102470 + MIR SINE MIR 65 243 -19 235 286 65 13 chr3 9934732 9934809 -208102349 + MIR3 SINE MIR 110 190 -18 24 32 0 0 chr3 9934809 9934840 -208102318 + AT_rich Low_complexity Low_complexity 1 31 0 2236 92 0 13 chr3 9934851 9935154 -208102004 + AluSx SINE Alu 1 299 -13 520 252 58 22 chr3 9936806 9936945 -208100213 + MER5A DNA MER1_type 14 157 -32 3702 261 96 38 chr3 9936945 9937616 -208099542 - L1M LINE L1 -840 5306 4675 180 0 0 0 chr3 9937616 9937636 -208099522 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 3702 261 96 38 chr3 9937636 9938934 -208098224 - L1M LINE L1 -1471 4675 3137 457 287 9 0 chr3 9938934 9939049 -208098109 - FLAM_A SINE Alu -17 116 1 3702 261 96 38 chr3 9939049 9939606 -208097552 - L1M LINE L1 -3009 3137 2614 229 237 17 17 chr3 9939611 9939670 -208097488 + MER5A DNA MER1_type 130 188 -1 465 271 52 42 chr3 9940063 9940255 -208096903 + MIR SINE MIR 68 261 -1 481 292 55 24 chr3 9941749 9942003 -208095155 - L1MC4a LINE L1 -321 5800 5670 332 301 134 29 chr3 9942036 9942327 -208094831 - L1ME LINE L1 -394 5727 5391 302 325 53 33 chr3 9942913 9943064 -208094094 + L2 LINE L2 3160 3313 0 237 94 57 57 chr3 9944129 9944182 -208092976 - L1ME4a LINE L1 -2 6119 6067 23 78 0 0 chr3 9944753 9944804 -208092354 + AT_rich Low_complexity Low_complexity 1 51 0 2511 75 0 0 chr3 9945034 9945342 -208091816 - AluY SINE Alu -3 308 1 290 274 102 47 chr3 9945347 9945562 -208091596 - HAL1 LINE L1 0 2507 2281 269 256 26 17 chr3 9945627 9945744 -208091414 - HAL1 LINE L1 -347 2160 2043 345 285 34 53 chr3 9945930 9946137 -208091021 - HAL1 LINE L1 -710 1797 1595 697 257 171 71 chr3 9946348 9946896 -208090262 - HAL1 LINE L1 -916 1591 989 274 309 141 28 chr3 9946987 9947236 -208089922 - HAL1 LINE L1 -1632 875 599 2532 27 0 0 chr3 9947449 9947746 -208089412 - L1HS LINE L1 0 6155 5859 250 256 158 0 chr3 9948144 9948226 -208088932 - L1ME LINE L1 -519 5602 5508 335 219 126 60 chr3 9948346 9948497 -208088661 - L1ME LINE L1 -767 5379 5219 2188 121 0 3 chr3 9953700 9953997 -208083161 - AluSx SINE Alu -16 296 1 253 241 0 17 chr3 9954761 9954819 -208082339 + MLT1J LTR MaLR 113 169 -342 2229 108 23 0 chr3 9955026 9955331 -208081827 - AluSx SINE Alu 0 312 1 585 288 100 39 chr3 9955331 9955601 -208081557 + MLT1L LTR MaLR 316 605 -10 287 298 12 0 chr3 9955612 9955696 -208081462 + L2 LINE L2 3185 3269 -3 198 0 0 0 chr3 9956018 9956040 -208081118 + (GA)n Simple_repeat Simple_repeat 1 22 0 248 251 96 107 chr3 9956524 9956711 -208080447 - L2 LINE L2 0 3313 3129 2858 268 66 40 chr3 9956711 9957194 -208079964 - L1M4 LINE L1 -5245 1297 828 229 25 0 50 chr3 9957194 9957234 -208079924 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2858 268 66 40 chr3 9957234 9958013 -208079145 - L1M4 LINE L1 -5714 828 2 2174 298 80 58 chr3 9958016 9959317 -208077841 - L2 LINE L2 -175 3138 1824 242 340 35 42 chr3 9961354 9961498 -208075660 - L2 LINE L2 -237 3035 2893 632 245 57 38 chr3 9961942 9962232 -208074926 - L1ME3 LINE L1 -5 6165 5861 203 147 0 0 chr3 9962251 9962285 -208074873 + (TG)n Simple_repeat Simple_repeat 1 34 0 1477 212 36 34 chr3 9962289 9962675 -208074483 - MER39 LTR ERV1 -1 706 320 296 222 46 65 chr3 9962665 9962773 -208074385 - LTR48B LTR ERV1 -538 106 1 * 351 0 0 0 chr3 9962784 9962823 -208074335 + (TG)n Simple_repeat Simple_repeat 1 39 0 564 207 42 0 chr3 9962826 9962964 -208074194 - L1ME2 LINE L1 -279 5885 5739 2185 112 37 31 chr3 9964509 9964892 -208072266 - L1PB1 LINE L1 -5 6146 5762 564 284 73 32 chr3 9965026 9965355 -208071803 - LTR16A1 LTR ERVL 0 457 80 307 344 23 0 chr3 9965508 9965636 -208071522 - MERVL LTR ERVL -2634 2851 2721 287 256 49 77 chr3 9965679 9965849 -208071309 - MERVL LTR ERVL -2372 2624 2461 316 289 22 0 chr3 9966059 9966149 -208071009 - MERVL LTR ERVL -2639 2357 2266 844 283 129 37 chr3 9966150 9966553 -208070605 - MERVL LTR ERVL -2865 2131 1692 744 339 55 31 chr3 9966756 9967172 -208069986 - MERVL LTR ERVL -3835 1161 736 821 158 49 54 chr3 9967452 9967636 -208069522 - MER5A DNA MER1_type -6 183 1 419 248 20 10 chr3 9967636 9967737 -208069421 - LTR16A1 LTR ERVL -341 116 15 2047 109 49 0 chr3 9968668 9968952 -208068206 + AluSx SINE Alu 1 298 -14 362 294 112 18 chr3 9969011 9969181 -208067977 + L2 LINE L2 3112 3297 -16 191 170 21 0 chr3 9969464 9969511 -208067647 + GA-rich Low_complexity Low_complexity 4 51 0 230 349 63 32 chr3 9969798 9969924 -208067234 + MER5A DNA MER1_type 51 180 -9 406 353 47 26 chr3 9969946 9970178 -208066980 - MIR SINE MIR -6 256 20 21 36 0 0 chr3 9971715 9971743 -208065415 + AT_rich Low_complexity Low_complexity 1 28 0 200 300 8 42 chr3 9971824 9971944 -208065214 + (TATG)n Simple_repeat Simple_repeat 3 118 0 320 319 7 0 chr3 9971944 9972085 -208065073 - MER113 DNA MER1_type? -378 143 2 738 327 57 71 chr3 9972392 9972554 -208064604 + L2 LINE L2 2729 2892 -421 1984 145 42 31 chr3 9972554 9972913 -208064245 + THE1B LTR MaLR 1 363 -1 738 327 57 71 chr3 9972913 9973325 -208063833 + L2 LINE L2 2892 3313 0 215 376 0 0 chr3 9974064 9974165 -208062993 - L2 LINE L2 -706 2608 2508 1255 128 0 5 chr3 9974701 9974896 -208062262 + L1PB1 LINE L1 1 194 -6669 13359 163 69 4 chr3 9974898 9980152 -208057006 + L1PB1 LINE L1 905 6507 -360 252 0 0 0 chr3 9980218 9980246 -208056912 + (CA)n Simple_repeat Simple_repeat 2 29 0 2366 126 6 0 chr3 9980247 9980603 -208056555 + L1PB1 LINE L1 6508 6865 -2 22 0 0 0 chr3 9980603 9980625 -208056533 + AT_rich Low_complexity Low_complexity 1 22 0 2017 161 41 19 chr3 9982343 9982710 -208054448 - THE1C LTR MaLR 0 375 1 327 268 263 24 chr3 9983806 9984011 -208053147 - MIR SINE MIR -3 259 6 363 298 0 0 chr3 9984492 9984586 -208052572 - MER117 DNA MER1_type -35 162 69 700 273 11 32 chr3 9984687 9984874 -208052284 - MER5A DNA MER1_type -6 183 1 643 290 40 24 chr3 9984886 9985138 -208052020 + MIR SINE MIR 7 262 0 1817 146 69 0 chr3 9985328 9985616 -208051542 - AluJo SINE Alu -4 308 1 2857 112 14 0 chr3 9986193 9986613 -208050545 - L1PA13 LINE L1 0 6163 5738 21 36 0 0 chr3 9986613 9986641 -208050517 + AT_rich Low_complexity Low_complexity 1 28 0 2574 150 31 10 chr3 9986682 9987169 -208049989 + L1MA5 LINE L1 5802 6298 -2 1995 126 0 29 chr3 9987377 9987686 -208049472 - AluSx SINE Alu -12 300 1 311 276 181 29 chr3 9990007 9990217 -208046941 - MIR SINE MIR -5 257 16 303 273 201 19 chr3 9990599 9990753 -208046405 - MLT1J2 LTR MaLR -4 446 265 915 217 0 48 chr3 9990753 9990942 -208046216 + MER5A DNA MER1_type 9 188 -1 2499 111 67 7 chr3 9992339 9992743 -208044415 + MSTA LTR MaLR 1 428 0 216 0 0 0 chr3 9993442 9993466 -208043692 + (A)n Simple_repeat Simple_repeat 1 24 0 1711 179 43 156 chr3 9993562 9994143 -208043015 + MLT2B3 LTR ERVL 1 509 -45 500 0 17 0 chr3 9994143 9994203 -208042955 + (CA)n Simple_repeat Simple_repeat 1 61 0 1711 179 43 156 chr3 9994203 9994243 -208042915 + MLT2B3 LTR ERVL 509 552 -2 2917 247 26 1 chr3 9994243 9994932 -208042226 + HERVL-B3 LTR ERVL 64 769 -4885 1205 248 8 0 chr3 9994932 9995178 -208041980 - ERVL LTR ERVL -5116 648 401 18710 174 20 14 chr3 9995180 9998400 -208038758 + HERVL-B3 LTR ERVL 811 4054 -1710 1993 154 0 3 chr3 9998400 9998705 -208038453 - AluJb SINE Alu -8 304 1 18710 174 20 14 chr3 9998705 9998793 -208038365 + HERVL-B3 LTR ERVL 4054 4140 -1624 695 232 0 96 chr3 9998807 9999017 -208038141 + MLT2B3 LTR ERVL 282 359 -94 396 0 0 0 chr3 9999023 9999067 -208038091 + (CA)n Simple_repeat Simple_repeat 1 44 0 31 58 0 0 chr3 9999095 9999147 -208038011 + AT_rich Low_complexity Low_complexity 1 52 0 259 167 0 0 chr3 9999157 9999205 -208037953 + MLT2B3 LTR ERVL 473 520 0 487 293 94 69 chr3 9999563 9999969 -208037189 + Charlie8 DNA MER1_type 3 418 -1999 262 204 0 0 chr3 10000047 10000101 -208037057 + Charlie8 DNA MER1_type 1360 1413 -1004 450 268 58 0 chr3 10000597 10000735 -208036423 - MER103 DNA DNA -4 162 17 2002 136 23 3 chr3 10000941 10001242 -208035916 + AluSx SINE Alu 4 310 -2 348 43 0 0 chr3 10001312 10001358 -208035800 + (TG)n Simple_repeat Simple_repeat 2 47 0 2141 102 7 16 chr3 10001436 10001739 -208035419 - AluSx SINE Alu -10 302 3 200 292 0 0 chr3 10001845 10001893 -208035265 + L2 LINE L2 3217 3264 -8 324 0 0 0 chr3 10002240 10002276 -208034882 + (TG)n Simple_repeat Simple_repeat 1 36 0 208 171 0 24 chr3 10002941 10002982 -208034176 + CT-rich Low_complexity Low_complexity 3 42 0 302 191 75 21 chr3 10003732 10003826 -208033332 - LTR67 LTR ERVL 0 557 459 180 0 0 0 chr3 10004444 10004464 -208032694 + (CA)n Simple_repeat Simple_repeat 2 21 0 1535 175 45 31 chr3 10004948 10005240 -208031918 + AluJo SINE Alu 1 296 -16 40 49 0 0 chr3 10005240 10005301 -208031857 + AT_rich Low_complexity Low_complexity 1 61 0 255 289 164 38 chr3 10005702 10005965 -208031193 - L1ME LINE L1 -451 5696 5401 337 316 78 54 chr3 10006070 10006443 -208030715 - L1ME LINE L1 -3451 2678 2297 23 68 0 0 chr3 10006599 10006643 -208030515 + AT_rich Low_complexity Low_complexity 1 44 0 317 330 117 61 chr3 10006958 10007348 -208029810 - L1ME LINE L1 -745 1745 1326 259 286 109 38 chr3 10007403 10007613 -208029545 - L1ME LINE L1 -4930 1189 965 261 243 0 0 chr3 10007750 10007820 -208029338 + (TA)n Simple_repeat Simple_repeat 1 70 0 306 389 25 33 chr3 10007884 10008128 -208029030 - L1ME LINE L1 -5389 730 489 344 307 62 64 chr3 10008190 10008548 -208028610 - L1ME LINE L1 -5758 361 5 239 153 0 68 chr3 10009043 10009102 -208028056 + GA-rich Low_complexity Low_complexity 4 58 0 3638 238 125 23 chr3 10009102 10010284 -208026874 + L1P LINE L1 1851 3210 -2936 297 0 0 0 chr3 10010284 10010317 -208026841 + (CA)n Simple_repeat Simple_repeat 2 34 0 3638 238 125 23 chr3 10010317 10010587 -208026571 + L1P LINE L1 3210 3451 -2695 5577 122 10 13 chr3 10010587 10011703 -208025455 + L1PA13 LINE L1 5036 6151 -12 204 191 24 0 chr3 10011741 10011783 -208025375 - MIR SINE MIR -61 147 105 408 323 107 15 chr3 10012286 10012549 -208024609 + Charlie8 DNA MER1_type 1 287 -2130 213 278 43 52 chr3 10012878 10012993 -208024165 + MIR SINE MIR 80 193 -69 280 370 106 68 chr3 10013967 10014289 -208022869 + L2 LINE L2 2920 3253 -19 315 71 0 0 chr3 10014331 10014373 -208022785 + (TG)n Simple_repeat Simple_repeat 1 42 0 342 287 166 36 chr3 10014625 10015175 -208021983 - L2 LINE L2 0 3313 2602 264 180 80 0 chr3 10015767 10015817 -208021341 - MIR3 SINE MIR -49 159 106 717 274 42 34 chr3 10016086 10016303 -208020855 - MIR SINE MIR -7 255 34 747 237 32 27 chr3 10016303 10016522 -208020636 + MER58A DNA MER1_type 1 220 -4 717 274 42 34 chr3 10016522 10016541 -208020617 - MIR SINE MIR -228 34 17 357 263 111 10 chr3 10016540 10016639 -208020519 - L2 LINE L2 -3 3310 3202 * 727 210 23 17 chr3 10016668 10016844 -208020314 - MER45A DNA AcHobo -1 177 1 754 283 8 53 chr3 10017169 10017351 -208019807 + MIR SINE MIR 8 178 -84 2197 94 0 7 chr3 10017351 10017639 -208019519 - AluSq SINE Alu -8 305 20 754 283 8 53 chr3 10017639 10017700 -208019458 + MIR SINE MIR 178 240 -22 225 0 0 0 chr3 10017953 10017978 -208019180 + (T)n Simple_repeat Simple_repeat 1 25 0 2067 127 0 22 chr3 10018001 10018317 -208018841 + AluSc SINE Alu 1 309 0 192 77 0 0 chr3 10018339 10018365 -208018793 + (CAAGC)n Simple_repeat Simple_repeat 2 27 0 346 214 11 11 chr3 10018365 10018454 -208018704 - Charlie8 DNA MER1_type -2276 141 53 22 0 0 0 chr3 10020145 10020167 -208016991 + AT_rich Low_complexity Low_complexity 1 22 0 1873 131 0 0 chr3 10020167 10020426 -208016732 + AluSq SINE Alu 1 259 -54 212 31 62 0 chr3 10020462 10020494 -208016664 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 207 219 0 0 chr3 10020495 10020536 -208016622 + (TA)n Simple_repeat Simple_repeat 1 41 0 23 54 0 0 chr3 10020584 10020621 -208016537 + AT_rich Low_complexity Low_complexity 1 37 0 611 252 103 13 chr3 10020841 10021075 -208016083 + MLT1J LTR MaLR 18 272 -239 2318 254 78 40 chr3 10022372 10023355 -208013803 - L1ME2 LINE L1 0 6098 5037 1470 158 18 108 chr3 10023355 10023696 -208013462 - AluJo SINE Alu -2 310 1 2318 254 78 40 chr3 10023696 10024270 -208012888 - L1ME2 LINE L1 -1061 5037 4486 459 285 6 0 chr3 10024923 10025095 -208012063 - L1ME2 LINE L1 -1596 4484 4312 586 297 66 34 chr3 10025128 10025448 -208011710 - L1ME2 LINE L1 -4491 1770 1441 314 268 78 39 chr3 10025621 10025826 -208011332 - L1ME2 LINE L1 -4840 1138 926 415 267 64 56 chr3 10025909 10026302 -208010856 - L1ME2 LINE L1 -5138 932 537 3575 137 20 18 chr3 10026716 10027313 -208009845 + Tigger3(Golem) DNA MER2_type 2431 3028 -1 592 287 32 57 chr3 10027333 10027612 -208009546 + MLT1K LTR MaLR 141 412 -176 211 286 0 0 chr3 10028558 10028614 -208008544 - MIR3 SINE MIR -27 181 126 25 0 0 0 chr3 10029501 10029526 -208007632 + AT_rich Low_complexity Low_complexity 1 25 0 1807 179 52 0 chr3 10029891 10030216 -208006942 - MER7A DNA MER2_type -5 341 2 187 81 135 27 chr3 10030216 10030253 -208006905 - MIR SINE MIR -11 251 211 321 215 103 28 chr3 10030670 10030777 -208006381 + MER69A DNA AcHobo 44 158 -19 216 0 0 0 chr3 10030841 10030865 -208006293 + (A)n Simple_repeat Simple_repeat 1 24 0 724 189 101 0 chr3 10031314 10031483 -208005675 - MLT2B1 LTR ERVL -334 186 1 211 321 37 12 chr3 10031502 10031583 -208005575 - MIR SINE MIR -69 193 111 1569 199 6 28 chr3 10031687 10032004 -208005154 + AluJb SINE Alu 3 312 0 212 123 0 68 chr3 10032007 10032080 -208005078 + (GAAAA)n Simple_repeat Simple_repeat 1 68 0 621 204 23 11 chr3 10032080 10032256 -208004902 + GA-rich Low_complexity Low_complexity 3 180 0 582 333 155 16 chr3 10032364 10032797 -208004361 - L2 LINE L2 -4 3309 2817 3991 62 318 0 chr3 10032933 10033559 -208003599 + LTR12 LTR ERV1 1 825 -1 341 308 139 29 chr3 10033774 10033982 -208003176 + MIR SINE MIR 16 246 -16 1102 251 111 60 chr3 10034069 10034590 -208002568 - MLT1H LTR MaLR 0 549 2 270 344 23 16 chr3 10034590 10034718 -208002440 + MIR SINE MIR 124 252 -10 1630 205 19 35 chr3 10034724 10035095 -208002063 + MLT1A1 LTR MaLR 1 365 0 414 302 86 14 chr3 10036450 10036672 -208000486 - MIR SINE MIR -14 248 11 376 315 171 20 chr3 10036949 10037095 -208000063 + L3 LINE CR1 1312 1479 -98 358 230 251 40 chr3 10038165 10038344 -207998814 + MIR SINE MIR 37 251 -11 354 291 129 89 chr3 10038823 10039125 -207998033 + L2 LINE L2 2943 3256 -16 745 280 52 13 chr3 10039155 10039387 -207997771 + MIR SINE MIR 19 259 -3 2494 63 0 0 chr3 10040847 10041149 -207996009 + AluY SINE Alu 1 302 -9 306 0 0 0 chr3 10041225 10041259 -207995899 + (TA)n Simple_repeat Simple_repeat 2 35 0 631 274 68 0 chr3 10041517 10041707 -207995451 + MIR SINE MIR 47 249 -13 233 325 103 8 chr3 10042151 10042277 -207994881 - MIR SINE MIR -93 169 32 272 331 49 22 chr3 10043019 10043203 -207993955 + MLT1K LTR MaLR 400 588 0 371 327 45 6 chr3 10043319 10043475 -207993683 - MIR SINE MIR -12 250 89 34 0 0 0 chr3 10043880 10043914 -207993244 + AT_rich Low_complexity Low_complexity 1 34 0 1684 257 138 4 chr3 10044319 10044840 -207992318 + MLT1E LTR MaLR 1 591 -2 23 68 0 0 chr3 10044912 10044956 -207992202 + AT_rich Low_complexity Low_complexity 1 44 0 58 74 0 0 chr3 10045342 10045463 -207991695 + AT_rich Low_complexity Low_complexity 1 121 0 216 216 45 9 chr3 10045494 10045605 -207991553 + (TA)n Simple_repeat Simple_repeat 2 116 0 338 333 82 41 chr3 10045661 10045976 -207991182 + L1MC/D LINE L1 5488 5815 -1993 2439 148 26 7 chr3 10046497 10046916 -207990242 + MSTA LTR MaLR 1 427 -1 1663 230 10 38 chr3 10048278 10048669 -207988489 - MLT1E2 LTR MaLR -19 607 228 310 155 214 68 chr3 10048669 10048772 -207988386 - MLT1E2 LTR MaLR -506 118 1 2244 112 0 7 chr3 10048879 10049183 -207987975 + AluSx SINE Alu 1 302 -10 204 305 7 28 chr3 10049261 10049402 -207987756 + A-rich Low_complexity Low_complexity 2 139 0 407 306 100 11 chr3 10049546 10049817 -207987341 + L1MC4a LINE L1 5278 5572 -2236 1485 192 26 13 chr3 10049863 10050171 -207986987 - AluSx SINE Alu 0 312 1 6010 192 35 16 chr3 10050182 10051481 -207985677 - L1MC3 LINE L1 0 7785 6463 303 271 188 12 chr3 10051538 10051708 -207985450 + L1MC4a LINE L1 5679 5878 -1930 321 127 0 0 chr3 10052071 10052126 -207985032 + L1PB3 LINE L1 6098 6152 -2 29 28 0 0 chr3 10052524 10052560 -207984598 + AT_rich Low_complexity Low_complexity 1 36 0 225 185 31 0 chr3 10053138 10053203 -207983955 - L1MC4 LINE L1 -1350 6692 6626 62 26 0 0 chr3 10053229 10053305 -207983853 + AT_rich Low_complexity Low_complexity 1 76 0 21 57 0 0 chr3 10053435 10053470 -207983688 + AT_rich Low_complexity Low_complexity 1 35 0 2280 64 0 3 chr3 10055291 10055605 -207981553 - AluY SINE Alu 0 313 1 203 375 83 0 chr3 10055636 10055732 -207981426 - MIR SINE MIR -71 137 34 303 350 0 34 chr3 10055775 10055892 -207981266 + MER5A DNA MER1_type 62 174 -15 186 326 211 11 chr3 10056424 10056519 -207980639 - L2 LINE L2 -5 3267 3154 390 230 56 56 chr3 10056543 10056669 -207980489 + L2 LINE L2 3188 3313 0 653 288 214 16 chr3 10057089 10057467 -207979691 + LTR16A LTR ERVL 5 457 0 418 286 0 17 chr3 10057493 10057612 -207979546 + MIR3 SINE MIR 83 199 -9 194 213 64 0 chr3 10058206 10058253 -207978905 + L2 LINE L2 3257 3306 -7 317 93 19 0 chr3 10058598 10058652 -207978506 + (TGAA)n Simple_repeat Simple_repeat 4 58 0 218 354 80 34 chr3 10059559 10059734 -207977424 + MER5A DNA MER1_type 1 183 -6 263 317 16 41 chr3 10061601 10061686 -207975472 - L2 LINE L2 0 3313 3230 1768 187 22 14 chr3 10061686 10062049 -207975109 + MER47A DNA MER2_type 1 366 0 263 317 16 41 chr3 10062049 10062086 -207975072 - L2 LINE L2 -83 3230 3194 306 302 0 12 chr3 10062426 10062512 -207974646 + L2 LINE L2 3225 3309 -4 301 308 23 18 chr3 10062479 10062625 -207974533 - MIR3 SINE MIR -30 178 32 * 249 108 0 0 chr3 10062779 10062816 -207974342 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 411 353 0 0 chr3 10063632 10063782 -207973376 + MER5B DNA MER1_type 29 178 0 293 253 94 79 chr3 10065185 10065387 -207971771 + MARNA DNA Mariner 162 366 -220 3971 147 15 48 chr3 10067266 10068063 -207969095 + L1MA4A LINE L1 5529 6299 -4 190 333 0 0 chr3 10068192 10068246 -207968912 - MER5A DNA MER1_type -50 139 86 2106 127 0 0 chr3 10068357 10068674 -207968484 + AluSx SINE Alu 1 317 0 507 321 26 16 chr3 10069216 10069409 -207967749 + MIR SINE MIR 50 244 -18 2242 64 0 0 chr3 10069756 10070023 -207967135 + AluY SINE Alu 38 304 -7 753 239 74 0 chr3 10070245 10070421 -207966737 + MER5A DNA MER1_type 1 189 0 366 322 164 0 chr3 10070431 10070583 -207966575 + MER5A DNA MER1_type 13 189 0 1532 198 87 37 chr3 10070669 10071104 -207966054 + MSTB2 LTR MaLR 1 457 0 791 184 119 0 chr3 10071242 10071410 -207965748 - MER20 DNA MER1_type 0 219 32 698 290 83 39 chr3 10071471 10071921 -207965237 - MLT1H1 LTR MaLR 0 555 80 2150 144 14 3 chr3 10072153 10072515 -207964643 + MER47A DNA MER2_type 1 366 0 871 230 171 12 chr3 10072515 10072764 -207964394 - L1ME3 LINE L1 -37 6125 5833 199 268 0 85 chr3 10073816 10073898 -207963260 + MER5A DNA MER1_type 28 102 -87 543 304 75 20 chr3 10074294 10074547 -207962611 - L2 LINE L2 -194 3078 2812 1511 248 17 8 chr3 10074571 10074930 -207962228 + MLT2D LTR ERVL 5 366 -48 210 150 0 0 chr3 10074934 10074974 -207962184 + (TAGG)n Simple_repeat Simple_repeat 4 43 0 348 123 18 0 chr3 10075031 10075088 -207962070 + MLT2D LTR ERVL 357 414 0 185 329 13 51 chr3 10075925 10076004 -207961154 - L2 LINE L2 -7 3306 3231 738 270 73 43 chr3 10076147 10076380 -207960778 - MIR SINE MIR -21 241 2 249 354 49 21 chr3 10076597 10076741 -207960417 - MIR SINE MIR -29 233 86 206 176 20 0 chr3 10077279 10077330 -207959828 + GA-rich Low_complexity Low_complexity 1 52 0 278 383 55 22 chr3 10078068 10078379 -207958779 - L2 LINE L2 -1387 1927 1607 227 350 0 41 chr3 10078691 10078788 -207958370 + MER5A DNA MER1_type 2 94 -95 28 0 0 0 chr3 10079090 10079118 -207958040 + AT_rich Low_complexity Low_complexity 1 28 0 1349 246 79 4 chr3 10079136 10079623 -207957535 - L1MD2 LINE L1 -51 6115 5586 183 250 0 0 chr3 10079962 10080006 -207957152 + L2 LINE L2 3269 3312 -1 22 35 0 0 chr3 10080264 10080293 -207956865 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr3 10080975 10080995 -207956163 + (TATG)n Simple_repeat Simple_repeat 1 20 0 247 250 15 0 chr3 10081001 10081069 -207956089 + (TG)n Simple_repeat Simple_repeat 2 70 0 444 276 121 40 chr3 10081488 10081687 -207955471 - MIR SINE MIR -14 248 34 248 264 0 8 chr3 10081735 10081856 -207955302 + (TA)n Simple_repeat Simple_repeat 2 121 0 280 317 122 18 chr3 10082134 10082298 -207954860 + MLT1J2 LTR MaLR 200 380 -70 389 281 130 16 chr3 10082420 10082612 -207954546 - MER58C DNA MER1_type 0 215 2 2505 150 26 42 chr3 10083064 10083558 -207953600 + MER66B LTR ERV1 1 486 0 225 0 0 0 chr3 10083762 10083787 -207953371 + (TG)n Simple_repeat Simple_repeat 2 26 0 883 158 0 62 chr3 10083873 10084050 -207953108 - FAM SINE Alu -9 166 1 206 118 0 29 chr3 10084338 10084372 -207952786 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 574 266 57 11 chr3 10085185 10085362 -207951796 - MER5A DNA MER1_type -3 186 2 441 314 93 42 chr3 10085807 10086043 -207951115 + MIR SINE MIR 1 248 -14 377 291 90 45 chr3 10086187 10086410 -207950748 + L1ME4a LINE L1 5665 5897 -224 24 53 0 0 chr3 10086514 10086552 -207950606 + AT_rich Low_complexity Low_complexity 1 38 0 23 54 0 0 chr3 10086570 10086607 -207950551 + AT_rich Low_complexity Low_complexity 1 37 0 229 306 0 0 chr3 10086845 10086917 -207950241 + CT-rich Low_complexity Low_complexity 2 73 0 2168 102 7 0 chr3 10087317 10087643 -207949515 - AluSx SINE Alu 0 328 1 1723 157 11 18 chr3 10089077 10089384 -207947774 + AluJb SINE Alu 1 305 0 262 361 54 23 chr3 10090699 10090829 -207946329 + L3 LINE CR1 234 367 -1210 292 273 65 0 chr3 10090957 10091096 -207946062 + MER103 DNA DNA 3 150 -16 2001 118 0 78 chr3 10091868 10092189 -207944969 - AluSx SINE Alu -16 296 1 24 0 0 0 chr3 10093092 10093116 -207944042 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr3 10093412 10093434 -207943724 + AT_rich Low_complexity Low_complexity 1 22 0 185 358 76 52 chr3 10094023 10094353 -207942805 - L2 LINE L2 -571 2743 2406 335 172 0 31 chr3 10094634 10094698 -207942460 - L1ME3A LINE L1 -78 6092 6031 2229 105 0 7 chr3 10095023 10095317 -207941841 - AluSc SINE Alu -17 292 1 404 251 52 76 chr3 10095321 10095532 -207941626 + HsTC2 DNA Tc2 13 218 -1680 759 257 60 0 chr3 10095535 10095753 -207941405 + HsTC2 DNA Tc2 500 730 -1168 707 179 26 13 chr3 10096061 10096212 -207940946 - L1MC1 LINE L1 0 6333 6181 629 198 0 0 chr3 10096216 10096327 -207940831 - AluJb SINE Alu -185 127 17 647 126 0 10 chr3 10096330 10096433 -207940725 - L1MC1 LINE L1 -152 6181 6080 279 179 30 15 chr3 10096471 10096538 -207940620 + HsTC2 DNA Tc2 1831 1898 0 196 266 92 92 chr3 10096729 10096838 -207940320 - MIR SINE MIR -152 110 2 330 355 82 14 chr3 10097800 10098020 -207939138 - MIR SINE MIR -25 237 3 233 136 114 0 chr3 10099179 10099223 -207937935 - MIR SINE MIR -107 155 107 308 335 55 6 chr3 10100451 10100615 -207936543 + MIR SINE MIR 20 191 -71 1667 183 3 17 chr3 10100897 10101187 -207935971 + AluJb SINE Alu 1 286 -26 240 301 36 36 chr3 10103827 10103910 -207933248 + L2 LINE L2 3189 3271 -1 498 61 0 0 chr3 10104106 10104172 -207932986 + (TCCA)n Simple_repeat Simple_repeat 2 67 0 1759 184 58 18 chr3 10104562 10104943 -207932215 + MSTD LTR MaLR 1 396 0 31 0 0 0 chr3 10105262 10105293 -207931865 + AT_rich Low_complexity Low_complexity 1 31 0 2282 110 7 0 chr3 10106126 10106426 -207930732 + AluSx SINE Alu 1 302 -10 1056 125 0 0 chr3 10107128 10107272 -207929886 + AluSp SINE Alu 116 259 -54 2072 115 3 3 chr3 10107732 10108028 -207929130 - AluSx SINE Alu -16 296 1 405 250 10 0 chr3 10108059 10108159 -207928999 + FLAM_A SINE Alu 25 125 -17 29 78 0 0 chr3 10110848 10110912 -207926246 + AT_rich Low_complexity Low_complexity 1 64 0 2060 134 3 3 chr3 10111298 10111597 -207925561 - AluSx SINE Alu -13 299 1 687 244 68 94 chr3 10112277 10112659 -207924499 + MLT1J LTR MaLR 123 494 -17 310 293 107 27 chr3 10112774 10112924 -207924234 + MIR3 SINE MIR 27 188 -20 2063 134 0 7 chr3 10113055 10113361 -207923797 + AluSg SINE Alu 5 308 -2 246 81 0 0 chr3 10113721 10113758 -207923400 + (CA)n Simple_repeat Simple_repeat 1 37 0 2141 111 0 26 chr3 10114265 10114572 -207922586 - AluSc SINE Alu -8 301 3 596 208 84 45 chr3 10116161 10116339 -207920819 + MER20 DNA MER1_type 35 219 0 366 23 0 0 chr3 10117207 10117250 -207919908 + (CAT)n Simple_repeat Simple_repeat 2 44 0 284 373 63 6 chr3 10117405 10117563 -207919595 - MLT1K LTR MaLR -408 180 14 24 0 0 0 chr3 10117943 10117967 -207919191 + AT_rich Low_complexity Low_complexity 1 24 0 226 321 0 9 chr3 10118435 10118547 -207918611 + A-rich Low_complexity Low_complexity 5 115 0 22 80 0 0 chr3 10118600 10118650 -207918508 + AT_rich Low_complexity Low_complexity 1 50 0 28 48 0 0 chr3 10118952 10118994 -207918164 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr3 10121475 10121496 -207915662 + AT_rich Low_complexity Low_complexity 1 21 0 235 158 13 26 chr3 10121993 10122069 -207915089 + (TTATA)n Simple_repeat Simple_repeat 5 79 0 1519 185 42 1 chr3 10122672 10123128 -207914030 + L1M2 LINE L1 5057 5530 -743 505 305 84 18 chr3 10123366 10123592 -207913566 + MIR SINE MIR 5 245 -17 180 271 0 42 chr3 10123817 10123865 -207913293 + L3 LINE CR1 1517 1562 -15 271 309 75 23 chr3 10124153 10124502 -207912656 + L1ME LINE L1 4256 4622 -1524 303 271 78 78 chr3 10124938 10125104 -207912054 + L1ME LINE L1 5647 5812 -309 221 238 0 0 chr3 10125104 10125146 -207912012 + polypurine Low_complexity Low_complexity 1 42 0 28 0 0 0 chr3 10125161 10125189 -207911969 + AT_rich Low_complexity Low_complexity 1 28 0 1893 155 24 39 chr3 10125219 10125600 -207911558 - THE1C LTR MaLR 0 375 1 211 217 22 0 chr3 10126816 10126862 -207910296 + CT-rich Low_complexity Low_complexity 1 47 0 21 36 0 0 chr3 10127104 10127132 -207910026 + AT_rich Low_complexity Low_complexity 1 28 0 340 241 15 138 chr3 10127161 10127356 -207909802 + MIR SINE MIR 78 248 -14 234 369 37 42 chr3 10132561 10132775 -207904383 + MIR SINE MIR 19 231 -31 195 184 0 0 chr3 10132988 10133026 -207904132 + (TG)n Simple_repeat Simple_repeat 1 38 0 186 103 0 0 chr3 10133025 10133054 -207904104 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 1296 112 0 0 chr3 10134176 10134384 -207902774 + AluSg/x SINE Alu 114 321 0 317 322 119 0 chr3 10134490 10134608 -207902550 + L2 LINE L2 3181 3312 -1 183 324 103 15 chr3 10135048 10135116 -207902042 + L2 LINE L2 3149 3222 -50 252 347 85 17 chr3 10135254 10135430 -207901728 + L2 LINE L2 2659 2846 -468 414 320 42 82 chr3 10135788 10136241 -207900917 + LTR67 LTR ERVL 100 534 -23 271 291 94 43 chr3 10136354 10136471 -207900687 + L2 LINE L2 3142 3264 -8 215 288 38 83 chr3 10136835 10136967 -207900191 - L2 LINE L2 -220 3052 2927 26 0 0 0 chr3 10141705 10141731 -207895427 + AT_rich Low_complexity Low_complexity 1 26 0 193 260 52 65 chr3 10142564 10142641 -207894517 + MIR SINE MIR 12 87 -175 355 246 88 35 chr3 10143803 10143917 -207893241 + L2 LINE L2 3194 3313 0 273 376 29 29 chr3 10144383 10144553 -207892605 + MIR SINE MIR 92 261 -1 403 223 177 15 chr3 10144640 10144770 -207892388 - L2 LINE L2 -2 3311 3161 1235 299 164 22 chr3 10144846 10145631 -207891527 - L2 LINE L2 -720 2594 1698 2256 125 0 0 chr3 10145686 10145998 -207891160 - AluSx SINE Alu 0 312 1 741 300 182 17 chr3 10146385 10146742 -207890416 - L2 LINE L2 0 3313 2898 2246 108 0 7 chr3 10147015 10147320 -207889838 + AluSx SINE Alu 1 303 -9 211 286 29 0 chr3 10149521 10149591 -207887567 - MIR SINE MIR -185 77 6 2500 63 0 16 chr3 10150626 10150942 -207886216 + AluY SINE Alu 1 311 0 202 277 21 0 chr3 10151128 10151175 -207885983 + L2 LINE L2 3210 3257 -15 1444 226 46 6 chr3 10151233 10151583 -207885575 + MLT1A2 LTR MaLR 3 366 -8 919 243 0 0 chr3 10152868 10153057 -207884101 - MER5A DNA MER1_type 0 189 1 198 318 158 48 chr3 10153756 10153997 -207883161 + L2 LINE L2 2794 3059 -213 1402 175 5 126 chr3 10154000 10154422 -207882736 - MLT1B LTR MaLR -18 372 2 262 190 70 10 chr3 10155839 10155939 -207881219 + (TA)n Simple_repeat Simple_repeat 2 107 0 596 265 97 22 chr3 10155941 10156126 -207881032 - MIR SINE MIR -55 207 9 616 334 64 53 chr3 10156166 10156903 -207880255 + L2 LINE L2 2489 3235 -78 272 241 38 13 chr3 10157431 10157510 -207879648 - MLT1J2 LTR MaLR 0 450 370 251 350 17 0 chr3 10157825 10157945 -207879213 + MIR SINE MIR 111 232 -30 24 0 0 0 chr3 10158259 10158283 -207878875 + AT_rich Low_complexity Low_complexity 1 24 0 2202 125 0 0 chr3 10158475 10158772 -207878386 - AluSx SINE Alu -11 301 5 1221 168 3 106 chr3 10159085 10159377 -207877781 + AluJo SINE Alu 44 305 -7 198 67 0 0 chr3 10212561 10212572 -207824586 + (TAAAAA)n Simple_repeat Simple_repeat 1 11 -19 5011 45 0 0 chr3 10212572 10213176 -207823982 + L1PA5 LINE L1 5549 6152 -2 198 67 0 0 chr3 10213176 10213194 -207823964 + (TAAAAA)n Simple_repeat Simple_repeat 10 30 0 278 276 0 51 chr3 10213210 10213308 -207823850 + L2 LINE L2 3221 3313 0 256 364 119 7 chr3 10213354 10213497 -207823661 + MIR3 SINE MIR 16 174 -34 233 330 43 0 chr3 10214000 10214094 -207823064 - MIR SINE MIR -91 117 20 585 0 0 0 chr3 10214647 10214712 -207822446 + (TC)n Simple_repeat Simple_repeat 1 65 0 2102 124 36 30 chr3 10214951 10215313 -207821845 + THE1B LTR MaLR 1 364 0 289 308 226 0 chr3 10215597 10215743 -207821415 + MIR SINE MIR 65 243 -19 235 286 65 13 chr3 10215787 10215864 -207821294 + MIR3 SINE MIR 110 190 -18 24 32 0 0 chr3 10215864 10215895 -207821263 + AT_rich Low_complexity Low_complexity 1 31 0 2236 92 0 13 chr3 10215906 10216209 -207820949 + AluSx SINE Alu 1 299 -13 520 252 58 22 chr3 10217861 10218000 -207819158 + MER5A DNA MER1_type 14 157 -32 3702 261 96 38 chr3 10218000 10218671 -207818487 - L1M LINE L1 -840 5306 4675 180 0 0 0 chr3 10218671 10218691 -207818467 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 3702 261 96 38 chr3 10218691 10219989 -207817169 - L1M LINE L1 -1471 4675 3137 457 287 9 0 chr3 10219989 10220104 -207817054 - FLAM_A SINE Alu -17 116 1 3702 261 96 38 chr3 10220104 10220661 -207816497 - L1M LINE L1 -3009 3137 2614 229 237 17 17 chr3 10220666 10220725 -207816433 + MER5A DNA MER1_type 130 188 -1 465 271 52 42 chr3 10221118 10221310 -207815848 + MIR SINE MIR 68 261 -1 481 292 55 24 chr3 10222804 10223058 -207814100 - L1MC4a LINE L1 -321 5800 5670 332 301 134 29 chr3 10223091 10223382 -207813776 - L1ME LINE L1 -394 5727 5391 302 325 53 33 chr3 10223968 10224119 -207813039 + L2 LINE L2 3160 3313 0 237 94 57 57 chr3 10225184 10225237 -207811921 - L1ME4a LINE L1 -2 6119 6067 23 78 0 0 chr3 10225808 10225859 -207811299 + AT_rich Low_complexity Low_complexity 1 51 0 2511 75 0 0 chr3 10226089 10226397 -207810761 - AluY SINE Alu -3 308 1 290 274 102 47 chr3 10226402 10226617 -207810541 - HAL1 LINE L1 0 2507 2281 269 256 26 17 chr3 10226682 10226799 -207810359 - HAL1 LINE L1 -347 2160 2043 345 285 34 53 chr3 10226985 10227192 -207809966 - HAL1 LINE L1 -710 1797 1595 697 257 171 71 chr3 10227403 10227951 -207809207 - HAL1 LINE L1 -916 1591 989 274 309 141 28 chr3 10228042 10228291 -207808867 - HAL1 LINE L1 -1632 875 599 2532 27 0 0 chr3 10228504 10228801 -207808357 - L1HS LINE L1 0 6155 5859 250 256 158 0 chr3 10229199 10229281 -207807877 - L1ME LINE L1 -519 5602 5508 335 219 126 60 chr3 10229401 10229552 -207807606 - L1ME LINE L1 -767 5379 5219 2188 121 0 3 chr3 10234755 10235052 -207802106 - AluSx SINE Alu -16 296 1 253 241 0 17 chr3 10235816 10235874 -207801284 + MLT1J LTR MaLR 113 169 -342 2229 108 23 0 chr3 10236081 10236386 -207800772 - AluSx SINE Alu 0 312 1 585 288 100 39 chr3 10236386 10236656 -207800502 + MLT1L LTR MaLR 316 605 -10 287 298 12 0 chr3 10236667 10236751 -207800407 + L2 LINE L2 3185 3269 -3 198 0 0 0 chr3 10237073 10237095 -207800063 + (GA)n Simple_repeat Simple_repeat 1 22 0 248 251 96 107 chr3 10237579 10237766 -207799392 - L2 LINE L2 0 3313 3129 2858 268 66 40 chr3 10237766 10238249 -207798909 - L1M4 LINE L1 -5245 1297 828 229 25 0 50 chr3 10238249 10238289 -207798869 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2858 268 66 40 chr3 10238289 10239068 -207798090 - L1M4 LINE L1 -5714 828 2 2174 298 80 58 chr3 10239071 10240372 -207796786 - L2 LINE L2 -175 3138 1824 242 340 35 42 chr3 10242409 10242553 -207794605 - L2 LINE L2 -237 3035 2893 632 245 57 38 chr3 10242997 10243287 -207793871 - L1ME3 LINE L1 -5 6165 5861 203 147 0 0 chr3 10243306 10243340 -207793818 + (TG)n Simple_repeat Simple_repeat 1 34 0 1477 212 36 34 chr3 10243344 10243730 -207793428 - MER39 LTR ERV1 -1 706 320 296 222 46 65 chr3 10243720 10243828 -207793330 - LTR48B LTR ERV1 -538 106 1 * 351 0 0 0 chr3 10243839 10243878 -207793280 + (TG)n Simple_repeat Simple_repeat 1 39 0 564 207 42 0 chr3 10243881 10244019 -207793139 - L1ME2 LINE L1 -279 5885 5739 200 308 64 0 chr3 10245394 10245472 -207791686 - MIR SINE MIR -98 164 82 2185 112 37 31 chr3 10245565 10245948 -207791210 - L1PB1 LINE L1 -5 6146 5762 564 284 73 32 chr3 10246082 10246411 -207790747 - LTR16A1 LTR ERVL 0 457 80 307 344 23 0 chr3 10246564 10246692 -207790466 - MERVL LTR ERVL -2634 2851 2721 287 256 49 77 chr3 10246735 10246905 -207790253 - MERVL LTR ERVL -2372 2624 2461 316 289 22 0 chr3 10247115 10247205 -207789953 - MERVL LTR ERVL -2639 2357 2266 844 283 129 37 chr3 10247206 10247609 -207789549 - MERVL LTR ERVL -2865 2131 1692 744 339 55 31 chr3 10247812 10248228 -207788930 - MERVL LTR ERVL -3835 1161 736 821 158 49 54 chr3 10248508 10248692 -207788466 - MER5A DNA MER1_type -6 183 1 419 248 20 10 chr3 10248692 10248793 -207788365 - LTR16A1 LTR ERVL -341 116 15 2047 109 49 0 chr3 10249724 10250008 -207787150 + AluSx SINE Alu 1 298 -14 362 294 112 18 chr3 10250067 10250237 -207786921 + L2 LINE L2 3112 3297 -16 191 170 21 0 chr3 10250520 10250567 -207786591 + GA-rich Low_complexity Low_complexity 4 51 0 230 349 63 32 chr3 10250854 10250980 -207786178 + MER5A DNA MER1_type 51 180 -9 406 353 47 26 chr3 10251002 10251234 -207785924 - MIR SINE MIR -6 256 20 21 36 0 0 chr3 10252771 10252799 -207784359 + AT_rich Low_complexity Low_complexity 1 28 0 200 300 8 42 chr3 10252880 10253000 -207784158 + (TATG)n Simple_repeat Simple_repeat 3 118 0 320 319 7 0 chr3 10253000 10253141 -207784017 - MER113 DNA MER1_type? -378 143 2 738 327 57 71 chr3 10253448 10253610 -207783548 + L2 LINE L2 2729 2892 -421 1984 145 42 31 chr3 10253610 10253969 -207783189 + THE1B LTR MaLR 1 363 -1 738 327 57 71 chr3 10253969 10254381 -207782777 + L2 LINE L2 2892 3313 0 215 376 0 0 chr3 10255120 10255221 -207781937 - L2 LINE L2 -706 2608 2508 1255 128 0 5 chr3 10255757 10255952 -207781206 + L1PB1 LINE L1 1 194 -6669 13014 163 69 6 chr3 10255954 10261217 -207775941 + L1PB1 LINE L1 905 6507 -360 252 0 0 0 chr3 10261283 10261311 -207775847 + (CA)n Simple_repeat Simple_repeat 2 29 0 2366 126 6 0 chr3 10261312 10261668 -207775490 + L1PB1 LINE L1 6508 6865 -2 22 0 0 0 chr3 10261668 10261690 -207775468 + AT_rich Low_complexity Low_complexity 1 22 0 2017 161 41 19 chr3 10263408 10263775 -207773383 - THE1C LTR MaLR 0 375 1 327 268 263 24 chr3 10264871 10265076 -207772082 - MIR SINE MIR -3 259 6 363 298 0 0 chr3 10265557 10265651 -207771507 - MER117 DNA MER1_type -35 162 69 700 273 11 32 chr3 10265752 10265939 -207771219 - MER5A DNA MER1_type -6 183 1 643 290 40 24 chr3 10265951 10266203 -207770955 + MIR SINE MIR 7 262 0 1817 146 69 0 chr3 10266393 10266681 -207770477 - AluJo SINE Alu -4 308 1 2821 112 17 0 chr3 10267258 10267677 -207769481 - L1PA13 LINE L1 0 6163 5738 21 36 0 0 chr3 10267677 10267705 -207769453 + AT_rich Low_complexity Low_complexity 1 28 0 2574 150 31 10 chr3 10267746 10268233 -207768925 + L1MA5 LINE L1 5802 6298 -2 1995 126 0 29 chr3 10268441 10268750 -207768408 - AluSx SINE Alu -12 300 1 311 276 181 29 chr3 10271071 10271281 -207765877 - MIR SINE MIR -5 257 16 303 273 201 19 chr3 10271663 10271817 -207765341 - MLT1J2 LTR MaLR -4 446 265 915 217 0 48 chr3 10271817 10272006 -207765152 + MER5A DNA MER1_type 9 188 -1 2499 111 67 7 chr3 10273402 10273806 -207763352 + MSTA LTR MaLR 1 428 0 216 0 0 0 chr3 10274505 10274529 -207762629 + (A)n Simple_repeat Simple_repeat 1 24 0 1711 179 43 156 chr3 10274625 10275206 -207761952 + MLT2B3 LTR ERVL 1 509 -45 500 0 17 0 chr3 10275206 10275266 -207761892 + (CA)n Simple_repeat Simple_repeat 1 61 0 1711 179 43 156 chr3 10275266 10275306 -207761852 + MLT2B3 LTR ERVL 509 552 -2 2917 247 26 1 chr3 10275306 10275995 -207761163 + HERVL-B3 LTR ERVL 64 769 -4885 1205 248 8 0 chr3 10275995 10276241 -207760917 - ERVL LTR ERVL -5116 648 401 18710 174 20 14 chr3 10276243 10279463 -207757695 + HERVL-B3 LTR ERVL 811 4054 -1710 1993 154 0 3 chr3 10279463 10279768 -207757390 - AluJb SINE Alu -8 304 1 18710 174 20 14 chr3 10279768 10279856 -207757302 + HERVL-B3 LTR ERVL 4054 4140 -1624 695 232 0 96 chr3 10279870 10280080 -207757078 + MLT2B3 LTR ERVL 282 359 -94 396 0 0 0 chr3 10280086 10280130 -207757028 + (CA)n Simple_repeat Simple_repeat 1 44 0 31 58 0 0 chr3 10280158 10280210 -207756948 + AT_rich Low_complexity Low_complexity 1 52 0 259 167 0 0 chr3 10280220 10280268 -207756890 + MLT2B3 LTR ERVL 473 520 0 487 293 94 69 chr3 10280626 10281032 -207756126 + Charlie8 DNA MER1_type 3 418 -1999 262 204 0 0 chr3 10281110 10281164 -207755994 + Charlie8 DNA MER1_type 1360 1413 -1004 450 268 58 0 chr3 10281660 10281798 -207755360 - MER103 DNA DNA -4 162 17 2002 136 23 3 chr3 10282004 10282305 -207754853 + AluSx SINE Alu 4 310 -2 348 43 0 0 chr3 10282375 10282421 -207754737 + (TG)n Simple_repeat Simple_repeat 2 47 0 2141 102 7 16 chr3 10282499 10282802 -207754356 - AluSx SINE Alu -10 302 3 200 292 0 0 chr3 10282908 10282956 -207754202 + L2 LINE L2 3217 3264 -8 324 0 0 0 chr3 10283303 10283339 -207753819 + (TG)n Simple_repeat Simple_repeat 1 36 0 208 171 0 24 chr3 10284004 10284045 -207753113 + CT-rich Low_complexity Low_complexity 3 42 0 302 191 75 21 chr3 10284795 10284889 -207752269 - LTR67 LTR ERVL 0 557 459 180 0 0 0 chr3 10285507 10285527 -207751631 + (CA)n Simple_repeat Simple_repeat 2 21 0 1535 175 45 31 chr3 10286011 10286303 -207750855 + AluJo SINE Alu 1 296 -16 40 49 0 0 chr3 10286303 10286364 -207750794 + AT_rich Low_complexity Low_complexity 1 61 0 255 289 164 38 chr3 10286765 10287028 -207750130 - L1ME LINE L1 -451 5696 5401 337 316 78 54 chr3 10287133 10287506 -207749652 - L1ME LINE L1 -3451 2678 2297 23 68 0 0 chr3 10287662 10287706 -207749452 + AT_rich Low_complexity Low_complexity 1 44 0 317 330 117 61 chr3 10288021 10288411 -207748747 - L1ME LINE L1 -745 1745 1326 286 276 109 38 chr3 10288466 10288676 -207748482 - L1ME LINE L1 -4930 1189 965 261 243 0 0 chr3 10288813 10288883 -207748275 + (TA)n Simple_repeat Simple_repeat 1 70 0 306 389 25 33 chr3 10288947 10289191 -207747967 - L1ME LINE L1 -5389 730 489 344 307 62 64 chr3 10289253 10289611 -207747547 - L1ME LINE L1 -5758 361 5 220 264 0 0 chr3 10291103 10291175 -207745983 + A-rich Low_complexity Low_complexity 1 72 0 277 366 0 11 chr3 10291958 10292051 -207745107 + L2 LINE L2 3173 3264 -8 1172 209 21 8 chr3 10292224 10292463 -207744695 - AluJo SINE Alu -14 298 57 587 303 34 0 chr3 10292609 10292784 -207744374 - MLT1J LTR MaLR -330 181 1 354 378 31 0 chr3 10292851 10292978 -207744180 + L2 LINE L2 3141 3271 -1 549 157 0 0 chr3 10293524 10293607 -207743551 + THE1B LTR MaLR 2 84 -291 994 141 59 29 chr3 10293611 10293781 -207743377 + THE1B LTR MaLR 190 364 0 285 241 157 19 chr3 10294386 10294494 -207742664 - MER5C DNA MER1_type -200 124 2 240 303 9 28 chr3 10294693 10294802 -207742356 - MIR SINE MIR -4 258 152 206 313 16 16 chr3 10294881 10294945 -207742213 - MIR SINE MIR -186 76 13 250 329 36 21 chr3 10295301 10295441 -207741717 - L2 LINE L2 -871 2443 2302 21 0 0 0 chr3 10296521 10296542 -207740616 + AT_rich Low_complexity Low_complexity 1 21 0 806 222 45 15 chr3 10296945 10297143 -207740015 + MER3 DNA MER1_type 6 209 0 194 349 85 21 chr3 10297203 10297392 -207739766 + MIR SINE MIR 57 257 -5 22 0 0 0 chr3 10297409 10297431 -207739727 + AT_rich Low_complexity Low_complexity 1 22 0 815 241 11 0 chr3 10297441 10297632 -207739526 - AluJo SINE Alu -107 205 13 2203 84 0 40 chr3 10297633 10297956 -207739202 - AluSq SINE Alu 0 311 1 198 304 29 0 chr3 10298017 10298086 -207739072 + MIR SINE MIR 83 153 -109 209 293 17 0 chr3 10298185 10298243 -207738915 + L2 LINE L2 2596 2654 -660 2258 102 0 7 chr3 10298380 10298683 -207738475 - AluSg SINE Alu -9 301 1 675 229 102 54 chr3 10299747 10299952 -207737206 + MER58A DNA MER1_type 10 224 0 902 189 14 78 chr3 10299960 10300177 -207736981 - MER20 DNA MER1_type -16 203 1 26 50 0 0 chr3 10301852 10301892 -207735266 + AT_rich Low_complexity Low_complexity 1 40 0 358 309 58 29 chr3 10301908 10302151 -207735007 - L1MC5 LINE L1 -83 7878 7629 1696 149 3 68 chr3 10302235 10302556 -207734602 - AluSx SINE Alu -10 302 3 23 33 0 0 chr3 10304351 10304381 -207732777 + AT_rich Low_complexity Low_complexity 1 30 0 260 329 21 35 chr3 10304514 10304657 -207732501 - L2 LINE L2 0 3313 3173 607 250 0 0 chr3 10304781 10304929 -207732229 + MIR SINE MIR 100 247 -15 241 366 46 15 chr3 10305668 10305799 -207731359 + L2 LINE L2 3133 3267 -5 1925 164 0 0 chr3 10307195 10307494 -207729664 - AluSx SINE Alu -13 299 1 1420 190 29 3 chr3 10307600 10307916 -207729242 - MER33 DNA MER1_type 0 324 1 25 0 0 0 chr3 10308369 10308394 -207728764 + AT_rich Low_complexity Low_complexity 1 25 0 2432 90 0 0 chr3 10308455 10308765 -207728393 - AluY SINE Alu -1 310 1 503 330 22 22 chr3 10308900 10309173 -207727985 + L1ME3A LINE L1 5659 5931 -239 189 0 0 0 chr3 10309230 10309251 -207727907 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 9008 232 93 21 chr3 10309450 10314418 -207722740 - L1PA16 LINE L1 -20 6849 1438 3708 53 0 0 chr3 10314428 10314884 -207722274 + L1PA5 LINE L1 5696 6151 -3 1325 216 49 54 chr3 10315290 10315660 -207721498 - L1PA16 LINE L1 -6038 811 444 393 341 71 66 chr3 10315682 10315893 -207721265 - L1M2 LINE L1 -6064 785 574 1245 311 35 14 chr3 10316403 10316834 -207720324 - L1M2 LINE L1 -6399 450 11 221 327 120 33 chr3 10316919 10317069 -207720089 - L3 LINE CR1 -834 743 581 407 280 38 71 chr3 10317134 10317345 -207719813 - MIR SINE MIR -38 224 21 2283 114 0 0 chr3 10317923 10318221 -207718937 + AluSq SINE Alu 4 301 -12 1263 148 8 25 chr3 10318614 10318648 -207718510 + L1MA5A LINE L1 6049 6082 -215 2350 135 25 0 chr3 10318648 10319003 -207718155 + THE1B LTR MaLR 1 364 0 1263 148 8 25 chr3 10319003 10319211 -207717947 + L1MA5A LINE L1 6082 6287 -10 1419 188 35 22 chr3 10320553 10320872 -207716286 + L1MA3 LINE L1 5983 6305 0 847 190 66 28 chr3 10320888 10321099 -207716059 + MER20 DNA MER1_type 1 219 0 188 234 125 31 chr3 10321386 10321450 -207715708 - L2 LINE L2 -12 3301 3232 414 296 63 25 chr3 10321523 10321682 -207715476 + L3 LINE CR1 1286 1450 -127 189 107 0 0 chr3 10321790 10321818 -207715340 + (TA)n Simple_repeat Simple_repeat 1 28 0 567 222 31 43 chr3 10321844 10322006 -207715152 - MER45A DNA AcHobo -18 160 1 327 85 0 0 chr3 10322332 10322379 -207714779 + (TAA)n Simple_repeat Simple_repeat 2 48 0 515 254 122 24 chr3 10322578 10322697 -207714461 + MIR SINE MIR 22 128 -134 1984 160 41 55 chr3 10322697 10323135 -207714023 + MSTB1 LTR MaLR 1 432 0 515 254 122 24 chr3 10323135 10323220 -207713938 + MIR SINE MIR 128 246 -16 263 379 49 10 chr3 10323258 10323461 -207713697 + MIR SINE MIR 13 223 -39 457 312 83 0 chr3 10323942 10324099 -207713059 + MIR SINE MIR 32 201 -61 24 32 0 0 chr3 10326492 10326523 -207710635 + AT_rich Low_complexity Low_complexity 1 31 0 528 241 0 0 chr3 10326787 10326961 -207710197 + (TA)n Simple_repeat Simple_repeat 2 175 0 282 56 0 0 chr3 10326998 10327034 -207710124 + (TAGA)n Simple_repeat Simple_repeat 3 38 0 506 345 24 0 chr3 10327149 10327317 -207709841 - MER5B DNA MER1_type -6 172 1 24 0 0 0 chr3 10327965 10327989 -207709169 + AT_rich Low_complexity Low_complexity 1 24 0 832 112 28 0 chr3 10328523 10328666 -207708492 - L1MA5A LINE L1 -3 6294 6148 24 32 0 0 chr3 10329131 10329162 -207707996 + AT_rich Low_complexity Low_complexity 1 31 0 2384 72 0 0 chr3 10329393 10329683 -207707475 + AluY SINE Alu 1 290 -21 367 264 72 52 chr3 10329687 10329880 -207707278 - L1MC5 LINE L1 -49 7912 7716 248 214 45 45 chr3 10329965 10330054 -207707104 - L1ME LINE L1 -462 5659 5571 258 283 0 16 chr3 10330939 10331020 -207706138 - MIR SINE MIR -121 87 8 791 297 68 0 chr3 10331111 10331347 -207705811 - MIR SINE MIR -5 257 6 309 274 35 138 chr3 10332201 10332519 -207704639 - L1ME LINE L1 -1310 4836 4552 2142 103 0 0 chr3 10332740 10333069 -207704089 - AluY SINE Alu 0 329 1 367 301 133 25 chr3 10333234 10333436 -207703722 - Charlie8 DNA MER1_type -2152 265 93 1871 156 3 7 chr3 10333458 10333753 -207703405 + AluJb SINE Alu 1 294 -18 459 81 35 0 chr3 10333768 10333854 -207703304 + (CA)n Simple_repeat Simple_repeat 2 90 0 1065 236 129 63 chr3 10334006 10334464 -207702694 - MLT1D LTR MaLR 0 505 18 306 231 91 8 chr3 10334733 10334854 -207702304 - L1ME3A LINE L1 -208 5962 5832 608 325 44 0 chr3 10334870 10335119 -207702039 - L1ME3A LINE L1 -415 5755 5496 216 222 32 16 chr3 10335121 10335184 -207701974 + CT-rich Low_complexity Low_complexity 3 66 0 256 48 48 0 chr3 10335189 10335231 -207701927 + (TC)n Simple_repeat Simple_repeat 2 45 0 207 0 0 0 chr3 10336155 10336178 -207700980 + (CA)n Simple_repeat Simple_repeat 2 24 0 194 337 40 0 chr3 10337176 10337277 -207699881 + MIR SINE MIR 108 212 -50 231 340 14 62 chr3 10337472 10337616 -207699542 - MIR SINE MIR -116 146 10 279 240 53 0 chr3 10337911 10337986 -207699172 + MIR SINE MIR 86 164 -98 497 250 15 38 chr3 10338874 10339006 -207698152 - L2 LINE L2 0 3272 3144 232 354 67 45 chr3 10339236 10339459 -207697699 - L2 LINE L2 -373 2941 2714 432 300 42 55 chr3 10341946 10342183 -207694975 + MIR SINE MIR 1 234 -28 1086 137 5 105 chr3 10345048 10345267 -207691891 + AluJo SINE Alu 89 285 -27 448 240 85 0 chr3 10345325 10345454 -207691704 - MER58B DNA MER1_type 0 341 202 318 206 16 0 chr3 10345531 10345594 -207691564 + MER3 DNA MER1_type 83 146 -63 256 218 0 0 chr3 10345584 10345639 -207691519 + MER3 DNA MER1_type 151 205 -4 * 22 35 0 0 chr3 10345900 10345929 -207691229 + AT_rich Low_complexity Low_complexity 1 29 0 530 272 23 40 chr3 10347196 10347369 -207689789 + MIR SINE MIR 33 202 -60 201 171 0 0 chr3 10347461 10347496 -207689662 + A-rich Low_complexity Low_complexity 1 35 0 322 302 88 44 chr3 10347825 10348030 -207689128 - L2 LINE L2 0 3313 3100 228 204 161 86 chr3 10348076 10348169 -207688989 - MIR SINE MIR -82 180 81 30 45 0 0 chr3 10348902 10348946 -207688212 + AT_rich Low_complexity Low_complexity 1 44 0 1722 88 4 0 chr3 10349280 10349506 -207687652 - AluSp SINE Alu 0 313 87 413 310 44 96 chr3 10349556 10349985 -207687173 + L2 LINE L2 2856 3262 -10 26 0 0 0 chr3 10350696 10350722 -207686436 + AT_rich Low_complexity Low_complexity 1 26 0 304 312 11 0 chr3 10350926 10351019 -207686139 - MIR SINE MIR -109 153 60 197 242 32 74 chr3 10351007 10351102 -207686056 - MIR SINE MIR -134 128 38 * 687 284 38 30 chr3 10352211 10352363 -207684795 + MIR SINE MIR 13 169 -93 192 40 0 0 chr3 10352363 10352388 -207684770 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 687 284 38 30 chr3 10352388 10352471 -207684687 + MIR SINE MIR 169 250 -12 228 250 69 0 chr3 10352603 10352675 -207684483 - L1P4 LINE L1 -714 5452 5376 319 304 6 82 chr3 10352741 10352912 -207684246 - MIR SINE MIR -71 191 34 565 216 35 9 chr3 10353183 10353299 -207683859 + FLAM_A SINE Alu 4 122 -11 968 248 98 15 chr3 10353522 10353857 -207683301 + L1ME2 LINE L1 5362 5724 -440 1433 266 93 30 chr3 10353863 10354302 -207682856 + LTR40a LTR ERVL 5 471 -48 1027 250 146 8 chr3 10354315 10354699 -207682459 + L1ME2 LINE L1 5727 6163 -1 545 332 30 17 chr3 10354711 10354943 -207682215 + MIR SINE MIR 28 262 0 23 0 0 0 chr3 10355360 10355383 -207681775 + AT_rich Low_complexity Low_complexity 1 23 0 2138 126 0 3 chr3 10355493 10355795 -207681363 - AluSx SINE Alu -11 301 1 21 36 0 0 chr3 10355805 10355833 -207681325 + AT_rich Low_complexity Low_complexity 1 28 0 392 227 117 63 chr3 10355913 10356213 -207680945 + L1MEd LINE L1 941 1256 -4863 1053 258 95 58 chr3 10356314 10356810 -207680348 - ERVL LTR ERVL -783 4981 4468 2959 248 75 44 chr3 10357059 10358333 -207678825 - L1M4 LINE L1 -1544 4602 3370 1580 172 34 27 chr3 10358333 10358629 -207678529 - AluJb SINE Alu -14 298 1 2959 248 75 44 chr3 10358629 10358685 -207678473 - L1M4 LINE L1 -2776 3370 3317 2121 112 0 41 chr3 10358685 10358853 -207678305 - AluSq SINE Alu -12 301 150 2155 99 0 47 chr3 10358853 10359175 -207677983 - AluY SINE Alu -4 307 1 2121 112 0 41 chr3 10359175 10359320 -207677838 - AluSq SINE Alu -163 150 1 2959 248 75 44 chr3 10359320 10359474 -207677684 - L1M4 LINE L1 -2829 3317 3070 580 239 89 28 chr3 10359488 10359668 -207677490 - MER58C DNA MER1_type -1 214 24 418 269 96 90 chr3 10359777 10360089 -207677069 - L1ME LINE L1 -5480 590 277 180 0 0 0 chr3 10360093 10360113 -207677045 + (CAT)n Simple_repeat Simple_repeat 2 21 0 222 261 185 0 chr3 10360280 10360345 -207676813 - MIR SINE MIR -173 89 13 198 309 73 29 chr3 10360343 10360479 -207676679 + MIR SINE MIR 111 252 -10 * 182 361 21 10 chr3 10360610 10360707 -207676451 + L2 LINE L2 2562 2659 -655 26 0 0 0 chr3 10360707 10360733 -207676425 + AT_rich Low_complexity Low_complexity 1 26 0 692 359 51 19 chr3 10361173 10361585 -207675573 - L2 LINE L2 -461 2853 2429 533 273 98 30 chr3 10361585 10362021 -207675137 - LTR33 LTR ERVL 0 521 1 505 332 118 19 chr3 10362021 10362292 -207674866 - L2 LINE L2 -891 2423 2126 1555 246 47 13 chr3 10362314 10362761 -207674397 + LTR40b LTR ERVL 1 462 0 288 320 176 35 chr3 10362812 10363068 -207674090 - L2 LINE L2 -2791 523 232 279 325 119 6 chr3 10363077 10363237 -207673921 - L2 LINE L2 -2905 409 232 5419 198 35 9 chr3 10363672 10365657 -207671501 - L1PA15 LINE L1 -4 6161 4127 218 253 0 21 chr3 10366174 10366269 -207670889 + CT-rich Low_complexity Low_complexity 3 95 0 622 274 153 21 chr3 10366310 10366828 -207670330 - L1MC5 LINE L1 -64 7897 7312 326 244 17 52 chr3 10368539 10368654 -207668504 + MIR SINE MIR 138 248 -14 2257 100 7 3 chr3 10369625 10369934 -207667224 - AluSx SINE Alu -2 310 1 5005 35 0 3 chr3 10370921 10371516 -207665642 - L1PA3 LINE L1 0 6155 5563 556 238 103 33 chr3 10371516 10371730 -207665428 - MLT1L LTR MaLR -368 247 19 334 253 12 0 chr3 10371880 10371963 -207665195 + MER103 DNA DNA 65 148 -18 21 36 0 0 chr3 10371963 10371991 -207665167 + AT_rich Low_complexity Low_complexity 1 28 0 247 329 76 40 chr3 10372390 10373222 -207663936 + L1MC4a LINE L1 4372 5233 -913 1211 236 22 31 chr3 10373311 10373671 -207663487 + L1MC4a LINE L1 5342 5698 -2110 265 360 11 11 chr3 10373702 10373880 -207663278 + L1MC4a LINE L1 6414 6591 -1217 327 208 104 10 chr3 10374049 10374145 -207663013 - MER103 DNA DNA -10 156 52 188 389 44 0 chr3 10374395 10374485 -207662673 - L2 LINE L2 -5 3308 3215 190 333 0 49 chr3 10374590 10374671 -207662487 - L2 LINE L2 -262 3010 2934 388 310 117 28 chr3 10374737 10374979 -207662179 + MIR SINE MIR 3 262 0 261 0 0 0 chr3 10375735 10375764 -207661394 + (TG)n Simple_repeat Simple_repeat 2 30 0 242 211 0 0 chr3 10376107 10376159 -207660999 + (TGAA)n Simple_repeat Simple_repeat 1 52 0 2909 196 63 114 chr3 10376330 10377259 -207659899 - MER21A LTR ERV1 -28 903 22 459 0 0 0 chr3 10377269 10377320 -207659838 + (TC)n Simple_repeat Simple_repeat 1 51 0 4653 246 74 25 chr3 10377434 10379049 -207658109 + L1MC4a LINE L1 6012 7705 -103 417 272 28 72 chr3 10379537 10379717 -207657441 - MIR SINE MIR -14 248 77 303 413 39 7 chr3 10380118 10380273 -207656885 - MIR3 SINE MIR -21 187 28 736 293 175 3 chr3 10380770 10381230 -207655928 + MLT1G1 LTR MaLR 5 594 -1 448 203 30 66 chr3 10382543 10382616 -207654542 + MER54A LTR ERVL 262 336 -489 1933 148 32 51 chr3 10382616 10382987 -207654171 - THE1B LTR MaLR 0 364 1 448 203 30 66 chr3 10382987 10383041 -207654117 + MER54A LTR ERVL 336 566 -259 270 0 0 0 chr3 10383310 10383340 -207653818 + (A)n Simple_repeat Simple_repeat 1 30 0 840 211 92 13 chr3 10385473 10385700 -207651458 - MLT2B1 LTR ERVL -275 245 1 410 287 73 90 chr3 10386948 10387235 -207649923 - L2 LINE L2 -440 2874 2595 563 222 102 40 chr3 10387235 10387411 -207649747 - MER5A DNA MER1_type -2 187 1 410 287 73 90 chr3 10387411 10387545 -207649613 - L2 LINE L2 -719 2595 2460 2441 67 10 3 chr3 10387759 10388057 -207649101 + AluY SINE Alu 1 300 -11 1183 119 0 0 chr3 10388057 10388217 -207648941 + AluSg/x SINE Alu 134 293 -19 206 322 61 17 chr3 10389357 10389472 -207647686 - L2 LINE L2 -8 3264 3145 217 372 80 9 chr3 10390096 10390209 -207646949 + L2 LINE L2 3151 3271 -1 2160 108 7 0 chr3 10390299 10390596 -207646562 - AluY SINE Alu -11 300 2 467 261 13 78 chr3 10391602 10391755 -207645403 + MIR SINE MIR 112 254 -8 1699 152 56 58 chr3 10391808 10392184 -207644974 + THE1C LTR MaLR 1 375 0 220 231 0 0 chr3 10392901 10392940 -207644218 - L2 LINE L2 -263 3050 3012 548 275 75 25 chr3 10393122 10393362 -207643796 + MER102a DNA MER1_type 63 314 -16 21 0 0 0 chr3 10393738 10393759 -207643399 + AT_rich Low_complexity Low_complexity 1 21 0 237 336 93 19 chr3 10394179 10394286 -207642872 + MIR SINE MIR 38 152 -110 1904 229 43 87 chr3 10394394 10395014 -207642144 - MLT1E2 LTR MaLR 0 626 1 2033 172 50 35 chr3 10395097 10395521 -207641637 + MSTB1 LTR MaLR 1 430 -2 398 176 0 0 chr3 10396163 10396231 -207640927 + L1M4 LINE L1 5585 5652 -532 838 223 74 61 chr3 10396305 10396396 -207640762 - MER110A LTR ERV1 0 468 380 1620 176 3 31 chr3 10396396 10396686 -207640472 + AluJo SINE Alu 1 282 -30 411 21 0 0 chr3 10396694 10396742 -207640416 + (GA)n Simple_repeat Simple_repeat 1 48 0 838 223 74 61 chr3 10396742 10396960 -207640198 - MER110A LTR ERV1 -94 374 170 404 226 59 0 chr3 10397043 10397145 -207640013 - MER110A LTR ERV1 -291 177 70 612 245 71 61 chr3 10399289 10399476 -207637682 + MIR SINE MIR 17 208 -54 2131 122 0 13 chr3 10399476 10399787 -207637371 + AluSc SINE Alu 1 307 -2 612 245 71 61 chr3 10399787 10399811 -207637347 + MIR SINE MIR 208 230 -32 201 268 63 35 chr3 10402162 10402285 -207634873 + MIR SINE MIR 23 154 -62 586 298 67 25 chr3 10402812 10403050 -207634108 - MIR SINE MIR -13 249 2 186 288 123 49 chr3 10403250 10403413 -207633745 - L2 LINE L2 -2 3270 3096 191 366 11 54 chr3 10403937 10404030 -207633128 - MER5A DNA MER1_type -3 186 98 1810 156 13 57 chr3 10404288 10404603 -207632555 - AluJb SINE Alu -11 301 1 434 297 58 0 chr3 10404696 10404834 -207632324 + MIR SINE MIR 46 191 -71 2360 97 0 3 chr3 10405116 10405426 -207631732 + AluY SINE Alu 1 309 -2 220 366 20 0 chr3 10406174 10406275 -207630883 - MIR SINE MIR -57 205 103 438 312 115 58 chr3 10406385 10406963 -207630195 - L2 LINE L2 -87 3226 2598 239 214 29 0 chr3 10406965 10407035 -207630123 + (TA)n Simple_repeat Simple_repeat 2 73 0 569 222 30 0 chr3 10407173 10407340 -207629818 - Charlie7 DNA MER1_type -253 2359 2188 310 268 65 14 chr3 10407503 10407641 -207629517 - Charlie7 DNA MER1_type -2120 492 348 214 211 19 106 chr3 10407699 10407803 -207629355 - MIR3 SINE MIR -17 191 97 245 226 19 0 chr3 10407835 10407888 -207629270 - L2 LINE L2 -38 3275 3222 1220 288 63 31 chr3 10407949 10408487 -207628671 + MLT1F1 LTR MaLR 11 565 -2 200 206 0 0 chr3 10409482 10409516 -207627642 + (ATG)n Simple_repeat Simple_repeat 3 36 0 1206 205 92 68 chr3 10409550 10409994 -207627164 + MSTB2 LTR MaLR 1 455 -2 4259 247 158 44 chr3 10409994 10411550 -207625608 + MLT1F1-int LTR MaLR 2 1735 0 1097 225 132 48 chr3 10411550 10411968 -207625190 + MSTB2 LTR MaLR 1 453 -4 270 0 0 0 chr3 10412069 10412099 -207625059 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 192 304 101 0 chr3 10412240 10412309 -207624849 - MIR SINE MIR -32 230 155 250 250 0 16 chr3 10412359 10412423 -207624735 + MER112 DNA MER1_type 12 74 -186 257 291 133 12 chr3 10412535 10412700 -207624458 - MIR SINE MIR -44 218 34 22 0 0 0 chr3 10413062 10413084 -207624074 + AT_rich Low_complexity Low_complexity 1 22 0 336 352 81 12 chr3 10413955 10414202 -207622956 + L1ME LINE L1 5485 5748 -373 21 57 0 0 chr3 10414280 10414315 -207622843 + AT_rich Low_complexity Low_complexity 1 35 0 257 375 27 9 chr3 10414326 10414438 -207622720 + L2 LINE L2 3199 3312 -1 180 0 0 0 chr3 10414623 10414643 -207622515 + (TA)n Simple_repeat Simple_repeat 1 20 0 298 337 189 0 chr3 10414879 10415048 -207622110 + MIR SINE MIR 49 249 -13 4347 249 61 27 chr3 10415175 10419186 -207617972 - L1MDb LINE L1 -2249 4157 17 941 239 79 98 chr3 10419389 10420171 -207616987 + L1MC4 LINE L1 7276 8042 0 566 290 49 27 chr3 10420923 10421106 -207616052 + MIR SINE MIR 20 206 -56 255 381 0 0 chr3 10421707 10421791 -207615367 + MIR SINE MIR 12 95 -167 430 315 147 23 chr3 10422138 10422620 -207614538 - MLT1H1 LTR MaLR -3 552 11 451 228 125 27 chr3 10422705 10422907 -207614251 - MIR SINE MIR 0 262 34 2328 80 3 0 chr3 10422986 10423273 -207613885 - AluY SINE Alu -13 298 11 409 250 17 26 chr3 10424318 10424434 -207612724 - MIR SINE MIR -15 247 133 355 329 21 14 chr3 10424682 10424825 -207612333 - MIR SINE MIR -72 190 47 254 376 62 1 chr3 10425215 10425436 -207611722 + MIR SINE MIR 17 249 -13 238 356 19 25 chr3 10425446 10425606 -207611552 - L3 LINE CR1 -387 1190 1032 223 303 45 34 chr3 10425613 10425702 -207611456 + MIR3 SINE MIR 98 187 -21 204 40 0 0 chr3 10425782 10425807 -207611351 + (TG)n Simple_repeat Simple_repeat 1 25 0 182 177 139 51 chr3 10426040 10426119 -207611039 - MIR SINE MIR -56 206 121 233 370 44 7 chr3 10427475 10427610 -207609548 + L2 LINE L2 2898 3037 -276 1393 240 61 16 chr3 10427639 10428018 -207609140 - MSTD LTR MaLR 0 396 1 5629 234 57 48 chr3 10428018 10429731 -207607427 - MSTD-int LTR MaLR 0 1735 9 1097 248 54 54 chr3 10429739 10430130 -207607028 - MSTD LTR MaLR 0 396 6 220 320 0 27 chr3 10430248 10430323 -207606835 + L2 LINE L2 3238 3310 -3 21 36 0 0 chr3 10431601 10431629 -207605529 + AT_rich Low_complexity Low_complexity 1 28 0 1227 198 115 114 chr3 10432149 10432695 -207604463 + MER44D DNA MER2_type 1 602 -3 181 333 51 62 chr3 10432850 10433027 -207604131 + L3b LINE CR1 1209 1383 -200 369 353 7 26 chr3 10433539 10433692 -207603466 + L2 LINE L2 3122 3271 -1 1446 203 33 0 chr3 10433875 10434181 -207602977 + MER58B DNA MER1_type 25 340 -1 1606 168 14 25 chr3 10435070 10435355 -207601803 + AluJo SINE Alu 1 282 -30 207 0 0 0 chr3 10435364 10435387 -207601771 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 219 150 0 0 chr3 10435773 10435813 -207601345 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 1246 203 21 0 chr3 10436686 10436967 -207600191 + L1MA4 LINE L1 6014 6300 0 321 324 145 6 chr3 10437189 10437368 -207599790 + MIR SINE MIR 57 260 -2 460 226 39 0 chr3 10438220 10438322 -207598836 + MIR SINE MIR 81 186 -76 744 181 44 93 chr3 10438465 10438691 -207598467 - MER20 DNA MER1_type -4 215 1 1560 174 9 76 chr3 10439071 10439399 -207597759 + AluJb SINE Alu 1 306 -6 2453 76 0 19 chr3 10439400 10439716 -207597442 + AluY SINE Alu 1 310 -1 1903 140 4 4 chr3 10440567 10440897 -207596261 - AluSx SINE Alu 0 336 7 250 286 0 0 chr3 10441043 10441099 -207596059 - MIR SINE MIR -155 107 52 412 228 100 74 chr3 10442163 10442364 -207594794 - MIR SINE MIR -47 215 14 1070 161 0 0 chr3 10442424 10442585 -207594573 + AluSg/x SINE Alu 133 293 -17 1161 260 91 61 chr3 10442925 10443433 -207593725 - MLT1G1 LTR MaLR -41 554 32 1812 188 46 6 chr3 10444505 10444856 -207592302 + MLT1A1 LTR MaLR 1 365 0 197 153 125 56 chr3 10445863 10445935 -207591223 - MIR SINE MIR -120 142 66 1046 216 35 109 chr3 10445954 10446357 -207590801 + MLT1A2 LTR MaLR 2 374 0 7696 23 0 0 chr3 10447326 10448486 -207588672 + L1PA3 LINE L1 4993 6152 -3 273 340 53 0 chr3 10448506 10448600 -207588558 + MER5A DNA MER1_type 35 133 -56 607 252 0 0 chr3 10448601 10448728 -207588430 - FLAM_A SINE Alu -6 127 1 9675 217 27 7 chr3 10448783 10452324 -207584834 - L1PA16 LINE L1 -27 6139 2542 245 297 16 0 chr3 10452465 10452529 -207584629 + L2 LINE L2 3204 3268 -4 227 247 34 45 chr3 10452689 10452778 -207584380 - L1ME LINE L1 -459 5662 5575 198 0 0 0 chr3 10453065 10453087 -207584071 + (TTG)n Simple_repeat Simple_repeat 2 23 0 6746 64 14 12 chr3 10453154 10454569 -207582589 - L1PA7 LINE L1 -3 6151 4739 8394 89 140 3 chr3 10454570 10455978 -207581180 - L1PA7 LINE L1 -1541 4605 3005 4308 107 5 32 chr3 10455974 10456719 -207580439 + L1PA7 LINE L1 2275 2999 -3147 * 2136 139 3 0 chr3 10457223 10457524 -207579634 - AluSx SINE Alu -10 302 1 652 257 89 25 chr3 10457528 10457730 -207579428 - MIR SINE MIR -45 217 3 232 250 117 0 chr3 10457730 10457787 -207579371 - MIR SINE MIR -61 147 84 216 97 0 0 chr3 10458496 10458527 -207578631 + (A)n Simple_repeat Simple_repeat 1 31 0 208 364 0 0 chr3 10458757 10458834 -207578324 + MIR SINE MIR 53 129 -133 344 351 0 0 chr3 10459008 10459085 -207578073 + MER91A DNA MER1_type 67 143 -53 198 364 0 11 chr3 10459318 10459406 -207577752 + MIR SINE MIR 9 95 -167 401 334 124 29 chr3 10459436 10459653 -207577505 - LTR16C LTR ERVL -63 428 170 1486 247 87 35 chr3 10459653 10460168 -207576990 + MLT1F LTR MaLR 1 542 0 401 334 124 29 chr3 10460168 10460264 -207576894 - LTR16C LTR ERVL -321 170 85 2160 137 0 6 chr3 10461309 10461622 -207575536 - AluSq SINE Alu -2 311 1 2403 86 0 3 chr3 10462605 10462907 -207574251 + AluSg1 SINE Alu 1 301 -8 2894 194 37 6 chr3 10463270 10463944 -207573214 + L1MB7 LINE L1 5471 6165 -19 447 248 4 26 chr3 10464011 10464212 -207572946 + L1ME3A LINE L1 5745 5940 -230 1676 229 31 11 chr3 10464989 10465447 -207571711 - MLT1C LTR MaLR 0 467 1 327 344 33 41 chr3 10465491 10465761 -207571397 + L2 LINE L2 2864 3131 -182 2231 109 7 0 chr3 10465762 10466056 -207571102 - AluSc SINE Alu -13 296 1 23 33 0 0 chr3 10466066 10466096 -207571062 + AT_rich Low_complexity Low_complexity 1 30 0 190 300 125 12 chr3 10466162 10466242 -207570916 + L2 LINE L2 3191 3279 -34 249 108 0 0 chr3 10466265 10466302 -207570856 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 272 292 56 0 chr3 10466413 10466502 -207570656 + MIR SINE MIR 66 159 -103 1434 183 44 7 chr3 10467369 10467643 -207569515 - AluJo SINE Alu -5 307 24 202 252 84 42 chr3 10467654 10467773 -207569385 + MIR SINE MIR 16 139 -123 196 308 112 95 chr3 10467873 10467936 -207569222 + L2 LINE L2 3099 3159 -113 681 237 25 30 chr3 10467936 10468172 -207568986 - MER106A DNA MER1_type -1 235 1 196 308 112 95 chr3 10468172 10468277 -207568881 + L2 LINE L2 3159 3270 -2 546 268 21 16 chr3 10468857 10469051 -207568107 + L1ME3A LINE L1 5942 6136 -34 371 253 133 19 chr3 10469109 10469267 -207567891 + MIR SINE MIR 87 262 0 231 265 41 20 chr3 10469403 10469501 -207567657 - L1MC4 LINE L1 -17 8025 7926 2630 43 0 0 chr3 10470405 10470708 -207566450 - AluY SINE Alu 0 311 9 592 256 6 36 chr3 10470741 10470909 -207566249 + MER5B DNA MER1_type 6 168 -10 2259 176 26 14 chr3 10471287 10471714 -207565444 + MSTB1 LTR MaLR 1 432 0 1280 227 68 49 chr3 10472270 10472698 -207564460 - MER63B DNA MER1_type 0 436 1 307 288 72 85 chr3 10473141 10473377 -207563781 - L1MC4a LINE L1 -1761 6047 5815 532 194 12 31 chr3 10473459 10473788 -207563370 + CT-rich Low_complexity Low_complexity 1 322 0 369 0 0 0 chr3 10473788 10473829 -207563329 + (TG)n Simple_repeat Simple_repeat 2 42 0 211 316 52 73 chr3 10473989 10474125 -207563033 + MIR SINE MIR 14 146 -116 244 399 21 7 chr3 10474127 10474270 -207562888 + MIR SINE MIR 2 146 -116 1470 259 42 24 chr3 10474271 10474770 -207562388 + LTR40a LTR ERVL 12 519 0 45 19 0 0 chr3 10474790 10474842 -207562316 + AT_rich Low_complexity Low_complexity 1 52 0 180 148 0 0 chr3 10474978 10475005 -207562153 + L2 LINE L2 3216 3242 -30 1578 148 26 26 chr3 10475008 10475319 -207561839 - THE1C LTR MaLR 0 375 65 8371 125 12 29 chr3 10475321 10476676 -207560482 - THE1C-int LTR MaLR -247 1333 2 2006 146 10 51 chr3 10476677 10477068 -207560090 - THE1C LTR MaLR 0 375 1 324 357 35 15 chr3 10477552 10477751 -207559407 - L2 LINE L2 -3 3310 3108 316 162 0 81 chr3 10477774 10477848 -207559310 - MLT1J2 LTR MaLR -38 412 345 505 274 22 15 chr3 10478211 10478346 -207558812 + MIR SINE MIR 16 151 -111 1686 205 55 3 chr3 10479212 10479559 -207557599 - MLT1A1 LTR MaLR 0 365 1 227 308 30 38 chr3 10479559 10479692 -207557466 + MIR SINE MIR 107 238 -24 397 310 51 112 chr3 10479752 10480126 -207557032 - L2 LINE L2 -4 3268 2918 182 365 49 71 chr3 10480179 10480546 -207556612 - L2 LINE L2 -510 2804 2446 26 30 0 0 chr3 10480948 10480981 -207556177 + AT_rich Low_complexity Low_complexity 1 33 0 184 169 14 141 chr3 10481118 10481189 -207555969 - L3b LINE CR1 -224 1359 1298 220 246 129 76 chr3 10481358 10481529 -207555629 + MIR SINE MIR 73 252 -10 480 304 19 19 chr3 10482643 10482804 -207554354 + MER5B DNA MER1_type 1 161 -17 1351 202 79 20 chr3 10482943 10483299 -207553859 - MLT1B LTR MaLR -11 379 3 475 227 213 13 chr3 10483715 10483865 -207553293 + MER5A DNA MER1_type 10 189 0 25 51 0 0 chr3 10484049 10484088 -207553070 + AT_rich Low_complexity Low_complexity 1 39 0 241 294 88 0 chr3 10484591 10484659 -207552499 + L2 LINE L2 3181 3254 -18 184 167 19 93 chr3 10484617 10484671 -207552487 + MIR SINE MIR 209 258 -4 * 23 33 0 0 chr3 10485555 10485585 -207551573 + AT_rich Low_complexity Low_complexity 1 30 0 207 284 45 34 chr3 10487067 10487155 -207550003 - L2 LINE L2 -40 3273 3185 469 309 176 5 chr3 10487434 10487644 -207549514 - MIR SINE MIR -2 260 15 27 0 0 0 chr3 10487854 10487881 -207549277 + AT_rich Low_complexity Low_complexity 1 27 0 261 343 25 29 chr3 10487933 10488079 -207549079 - MIR SINE MIR -46 162 16 211 293 40 27 chr3 10488516 10488591 -207548567 - L2 LINE L2 -68 3245 3170 237 360 20 39 chr3 10488853 10489006 -207548152 - L2 LINE L2 -548 2766 2617 200 369 72 18 chr3 10489165 10489276 -207547882 - L2 LINE L2 -793 2521 2405 198 0 0 0 chr3 10489314 10489336 -207547822 + (T)n Simple_repeat Simple_repeat 1 22 0 840 231 44 15 chr3 10489336 10489539 -207547619 - MER58A DNA MER1_type -15 209 1 22 35 0 0 chr3 10489566 10489595 -207547563 + AT_rich Low_complexity Low_complexity 1 29 0 541 196 40 111 chr3 10490535 10490676 -207546482 - LTR39 LTR ERV1 0 783 658 2256 112 3 3 chr3 10490676 10490988 -207546170 + AluSx SINE Alu 1 312 0 541 196 40 111 chr3 10490988 10491045 -207546113 - LTR39 LTR ERV1 -125 658 599 1197 176 43 79 chr3 10491097 10491426 -207545732 - LTR39 LTR ERV1 -456 327 11 816 153 13 38 chr3 10491471 10491628 -207545530 - THE1B LTR MaLR 0 364 212 6287 112 177 79 chr3 10491635 10493178 -207543980 + pTR5 LTR ERV1 743 2436 -2 1398 126 0 14 chr3 10493184 10493398 -207543760 - THE1B LTR MaLR -153 211 1 11499 96 9 2 chr3 10493398 10494968 -207542190 - THE1B-int LTR MaLR 0 1580 1 2328 133 3 35 chr3 10494968 10495344 -207541814 - THE1B LTR MaLR 0 364 1 789 253 6 6 chr3 10495428 10495606 -207541552 - MER5B DNA MER1_type 0 178 1 2167 94 0 11 chr3 10495748 10496034 -207541124 + AluY SINE Alu 1 283 -28 516 16 0 0 chr3 10496034 10496095 -207541063 + (TA)n Simple_repeat Simple_repeat 1 61 0 28 0 0 0 chr3 10497303 10497331 -207539827 + AT_rich Low_complexity Low_complexity 1 28 0 328 271 0 85 chr3 10497331 10497372 -207539786 - MLT1L LTR MaLR -181 434 391 2191 116 0 0 chr3 10497372 10497666 -207539492 - AluSg SINE Alu -14 296 3 328 271 0 85 chr3 10497666 10497742 -207539416 - MLT1L LTR MaLR -224 391 327 501 276 65 5 chr3 10500029 10500228 -207536930 - MLT1K LTR MaLR 0 588 378 679 222 99 0 chr3 10500414 10500585 -207536573 + MER5A DNA MER1_type 1 188 -1 229 316 0 13 chr3 10500593 10500669 -207536489 - MLT1K LTR MaLR -412 176 102 217 361 83 18 chr3 10501270 10501439 -207535719 - MER5A DNA MER1_type 0 189 10 * 238 340 110 0 chr3 10501436 10501536 -207535622 + MIR SINE MIR 12 122 -140 260 300 60 56 chr3 10505983 10506159 -207530999 - MER5B DNA MER1_type 0 178 12 363 299 31 0 chr3 10506604 10506731 -207530427 - MER117 DNA MER1_type -35 162 32 193 401 80 0 chr3 10507032 10507169 -207529989 - L2 LINE L2 -2 3270 3123 1955 238 31 53 chr3 10509365 10509736 -207527422 + L1ME1 LINE L1 5468 5817 -349 2121 128 0 0 chr3 10509736 10510025 -207527133 + AluSx SINE Alu 1 289 -23 1955 238 31 53 chr3 10510025 10510363 -207526795 + L1ME1 LINE L1 5817 6161 -5 213 283 17 0 chr3 10510528 10510588 -207526570 + MIR SINE MIR 202 262 0 207 361 84 40 chr3 10510674 10510923 -207526235 - L2 LINE L2 -410 2904 2645 834 257 10 5 chr3 10513529 10513735 -207523423 + MER58A DNA MER1_type 11 217 -7 611 325 94 35 chr3 10513744 10514224 -207522934 + L2 LINE L2 2805 3312 -1 411 344 0 21 chr3 10514559 10514800 -207522358 + L1ME LINE L1 5467 5702 -419 519 328 21 5 chr3 10514907 10515093 -207522065 - MIR SINE MIR -9 253 65 596 237 0 0 chr3 10515163 10515277 -207521881 + MIR SINE MIR 88 201 -61 917 300 132 26 chr3 10515303 10515845 -207521313 - L2 LINE L2 -14 3299 2687 227 309 0 15 chr3 10515853 10515921 -207521237 + MIR SINE MIR 186 252 -10 577 292 242 11 chr3 10516533 10517089 -207520069 - L2 LINE L2 0 3313 2625 366 261 59 59 chr3 10517513 10517632 -207519526 + MER91C DNA MER1_type 22 140 0 219 114 0 0 chr3 10518149 10518184 -207518974 + (TG)n Simple_repeat Simple_repeat 2 36 0 606 285 126 22 chr3 10518276 10518546 -207518612 - L2 LINE L2 0 3313 3016 1838 284 127 51 chr3 10518801 10520196 -207516962 - L2 LINE L2 -218 3095 1586 2167 169 70 5 chr3 10520231 10520633 -207516525 - MSTA LTR MaLR 0 428 1 437 211 78 0 chr3 10520633 10520723 -207516435 - MER58 DNA MER1_type -118 97 1 262 330 61 9 chr3 10522237 10522352 -207514806 - MIR3 SINE MIR -25 183 63 257 320 39 0 chr3 10523747 10523850 -207513308 + MIR SINE MIR 37 143 -65 205 290 65 43 chr3 10524164 10524257 -207512901 + L2 LINE L2 2852 2946 -326 1047 196 66 35 chr3 10524257 10524574 -207512584 + Charlie4a DNA MER1_type 181 507 -1 236 292 91 13 chr3 10524785 10524939 -207512219 - MLT1L LTR MaLR 0 615 450 189 0 0 0 chr3 10525291 10525312 -207511846 + (A)n Simple_repeat Simple_repeat 1 21 0 1021 215 11 76 chr3 10526997 10527379 -207509779 - LTR37A LTR ERV1 -52 374 18 1798 238 68 100 chr3 10527415 10528582 -207508576 - MER31-int LTR ERV1 -692 4244 3116 211 361 41 10 chr3 10528797 10528894 -207508264 - MER5B DNA MER1_type -78 100 1 853 235 27 23 chr3 10528987 10529208 -207507950 - MER58A DNA MER1_type -2 222 1 2106 116 0 20 chr3 10529741 10530044 -207507114 - AluSx SINE Alu -14 298 2 248 298 43 0 chr3 10530519 10530613 -207506545 + Charlie1 DNA MER1_type 2635 2732 -29 5831 107 19 0 chr3 10530943 10532335 -207504823 - L1PA14 LINE L1 0 6161 4744 1151 285 101 32 chr3 10532494 10533027 -207504131 - L2 LINE L2 -1547 1767 1198 562 273 12 6 chr3 10534322 10534487 -207502671 + MIR SINE MIR 87 252 -10 196 337 12 12 chr3 10534760 10534843 -207502315 - MIR3 SINE MIR -11 197 115 245 232 253 0 chr3 10534891 10534990 -207502168 - MER5A DNA MER1_type -22 167 44 524 289 80 30 chr3 10535359 10535560 -207501598 + MIR SINE MIR 7 217 -45 182 246 33 16 chr3 10535580 10535641 -207501517 - L2 LINE L2 -49 3223 3162 392 250 56 21 chr3 10535751 10535895 -207501263 + L3 LINE CR1 1192 1340 -237 1985 134 0 3 chr3 10537192 10537496 -207499662 + AluSx SINE Alu 1 303 0 233 222 37 25 chr3 10537509 10537590 -207499568 - L1ME3A LINE L1 -97 6073 5992 270 275 19 62 chr3 10538387 10538547 -207498611 - L1M4c LINE L1 -4966 1418 1266 371 267 20 14 chr3 10539069 10539215 -207497943 + (TA)n Simple_repeat Simple_repeat 1 147 0 283 308 101 49 chr3 10540097 10540306 -207496852 + L1M4 LINE L1 4563 4760 -1386 939 90 45 0 chr3 10540306 10540439 -207496719 + MER85 DNA T2_type 1 139 0 283 308 101 49 chr3 10540439 10540616 -207496542 + L1M4 LINE L1 4760 4969 -1177 265 303 97 36 chr3 10541177 10541342 -207495816 + MIR SINE MIR 87 261 -1 396 263 69 46 chr3 10541410 10541585 -207495573 + MIR SINE MIR 79 257 -5 375 206 63 16 chr3 10543421 10543547 -207493611 + MER53 DNA DNA 55 186 -3 290 77 0 0 chr3 10544091 10544130 -207493028 - MADE1 DNA Mariner -41 39 1 243 321 32 22 chr3 10545203 10545325 -207491833 - MIR SINE MIR -46 216 91 214 253 160 27 chr3 10545412 10545487 -207491671 - L2 LINE L2 -1 3271 3187 204 338 29 0 chr3 10545634 10545702 -207491456 - L2 LINE L2 -65 3207 3138 1146 219 302 16 chr3 10545892 10546336 -207490822 - MLT2F LTR ERVL -88 575 5 188 283 98 22 chr3 10547255 10547347 -207489811 + MIR SINE MIR 91 189 -73 261 270 230 0 chr3 10547393 10547545 -207489613 - L2 LINE L2 -154 3159 2973 279 320 48 10 chr3 10547843 10547946 -207489212 + MIR SINE MIR 150 256 -6 213 310 0 0 chr3 10548108 10548166 -207488992 - L2 LINE L2 -225 3047 2990 186 349 106 0 chr3 10548650 10548716 -207488442 - MIR SINE MIR -63 145 73 886 191 12 0 chr3 10548716 10548878 -207488280 + AluJo SINE Alu 119 282 -30 2015 196 76 5 chr3 10549616 10550050 -207487108 - MLT1C LTR MaLR 0 467 3 1923 166 27 14 chr3 10550833 10551201 -207485957 - MLT1B LTR MaLR 0 390 18 194 287 178 10 chr3 10551435 10551536 -207485622 - L2 LINE L2 -4 3309 3192 181 286 18 36 chr3 10551583 10551639 -207485519 + L2 LINE L2 3188 3242 -30 236 250 31 16 chr3 10551769 10551833 -207485325 + MIR3 SINE MIR 120 184 -24 246 333 12 12 chr3 10551843 10551927 -207485231 - L2 LINE L2 -198 3074 2991 1205 227 69 40 chr3 10552475 10552854 -207484304 - MLT1B LTR MaLR 0 390 1 191 374 0 30 chr3 10554712 10554811 -207482347 - L2 LINE L2 -49 3264 3169 874 211 0 63 chr3 10554811 10555034 -207482124 - MER20 DNA MER1_type -1 218 10 398 331 150 30 chr3 10555114 10555526 -207481632 - L2 LINE L2 -200 3113 2647 808 239 109 13 chr3 10556427 10556665 -207480493 - MIR SINE MIR 0 262 2 207 0 0 0 chr3 10557690 10557713 -207479445 + (A)n Simple_repeat Simple_repeat 1 23 0 2355 78 0 28 chr3 10557714 10558034 -207479124 + AluY SINE Alu 1 311 0 796 227 77 0 chr3 10558203 10558397 -207478761 + MER3 DNA MER1_type 1 209 0 1701 173 7 26 chr3 10558880 10559186 -207477972 - AluJo SINE Alu -12 300 1 219 340 60 50 chr3 10559384 10559484 -207477674 + L2 LINE L2 2988 3088 -184 700 267 0 12 chr3 10560343 10560515 -207476643 - FRAM SINE Alu -3 173 4 1077 209 51 13 chr3 10562942 10563250 -207473908 - L1ME2 LINE L1 -29 6135 5818 324 274 32 95 chr3 10564698 10564888 -207472270 - MER5B DNA MER1_type 0 178 1 268 338 0 0 chr3 10565389 10565466 -207471692 - MER5A DNA MER1_type -109 80 4 231 314 14 0 chr3 10565950 10566020 -207471138 + L2 LINE L2 3239 3309 -4 257 300 32 12 chr3 10566375 10566483 -207470675 + MIR SINE MIR 6 118 -90 296 300 18 0 chr3 10566647 10566757 -207470401 - Charlie8 DNA MER1_type -2242 175 64 214 203 14 14 chr3 10567214 10567288 -207469870 + (TA)n Simple_repeat Simple_repeat 2 75 0 224 217 22 0 chr3 10567322 10567368 -207469790 + (TG)n Simple_repeat Simple_repeat 2 48 0 300 322 0 0 chr3 10567368 10567458 -207469700 - L1MC4 LINE L1 -1339 6703 6614 2423 97 0 0 chr3 10568477 10568787 -207468371 + AluSg SINE Alu 1 310 0 2105 113 0 7 chr3 10569389 10569702 -207467456 - AluSg SINE Alu 0 311 1 195 333 228 21 chr3 10570607 10571072 -207466086 - L2 LINE L2 -349 2923 2372 24 67 0 0 chr3 10571450 10571495 -207465663 + AT_rich Low_complexity Low_complexity 1 45 0 2329 102 0 7 chr3 10571575 10571878 -207465280 + AluSx SINE Alu 1 301 -11 2402 47 0 60 chr3 10572280 10572598 -207464560 - AluY SINE Alu -12 299 1 350 330 18 41 chr3 10573418 10573639 -207463519 + MIR SINE MIR 19 234 -28 1085 153 0 0 chr3 10573923 10574093 -207463065 - AluSg/x SINE Alu -7 305 136 505 237 15 0 chr3 10575366 10575497 -207461661 + MER94 DNA DNA 2 134 0 308 264 104 35 chr3 10575648 10575792 -207461366 + MIR SINE MIR 28 181 -81 253 297 73 70 chr3 10576140 10576413 -207460745 + L2 LINE L2 2907 3180 -133 224 292 67 58 chr3 10576988 10577108 -207460050 - MIR SINE MIR -51 211 91 303 297 11 11 chr3 10577774 10577865 -207459293 + MIR SINE MIR 2 92 -170 227 170 57 0 chr3 10578670 10578723 -207458435 - MLT1D LTR MaLR -401 104 49 324 293 153 19 chr3 10579129 10579286 -207457872 + MIR SINE MIR 58 235 -27 2163 120 3 22 chr3 10579418 10579734 -207457424 + AluSx SINE Alu 1 310 -2 270 0 0 0 chr3 10579758 10579788 -207457370 + (CA)n Simple_repeat Simple_repeat 1 30 0 186 231 0 0 chr3 10582692 10582731 -207454427 + L2 LINE L2 3258 3296 -17 538 326 19 25 chr3 10583336 10583658 -207453500 + L1MC4 LINE L1 7271 7590 -452 * 2570 237 66 22 chr3 10583651 10584723 -207452435 + L1ME1 LINE L1 4428 5601 -565 2441 62 0 3 chr3 10584723 10585031 -207452127 + AluY SINE Alu 1 307 -4 2570 237 66 22 chr3 10585031 10585578 -207451580 + L1ME1 LINE L1 5601 6122 -44 424 203 122 14 chr3 10585474 10585622 -207451536 + L1MA10 LINE L1 6169 6332 -2 * 467 284 130 17 chr3 10585624 10586033 -207451125 + L1MC4 LINE L1 7588 8042 0 896 250 43 20 chr3 10586351 10586651 -207450507 - LTR16A LTR ERVL -49 401 95 185 324 28 39 chr3 10587010 10587126 -207450032 - MIR SINE MIR -119 89 7 1141 68 7 0 chr3 10587728 10587876 -207449282 - L1PA7 LINE L1 -7 6147 5999 28 29 0 0 chr3 10588164 10588199 -207448959 + AT_rich Low_complexity Low_complexity 1 35 0 2610 36 0 13 chr3 10588376 10588685 -207448473 - AluY SINE Alu -6 305 1 203 321 75 38 chr3 10588902 10589008 -207448150 + MIR3 SINE MIR 7 116 -92 197 162 0 27 chr3 10589202 10589239 -207447919 - L2 LINE L2 -95 3218 3183 374 300 29 43 chr3 10589619 10589759 -207447399 - L2 LINE L2 -556 2758 2621 27 62 0 0 chr3 10589946 10589994 -207447164 + AT_rich Low_complexity Low_complexity 1 48 0 1265 170 9 27 chr3 10590268 10590492 -207446666 + AluJo SINE Alu 75 294 -18 263 355 11 0 chr3 10591540 10591633 -207445525 - L2 LINE L2 -6 3266 3173 208 162 27 0 chr3 10591650 10591687 -207445471 + CT-rich Low_complexity Low_complexity 2 39 0 311 399 28 5 chr3 10591767 10591980 -207445178 - L2 LINE L2 -218 3054 2837 249 290 21 21 chr3 10592202 10592295 -207444863 - MIR SINE MIR -136 126 34 521 313 47 5 chr3 10592456 10592648 -207444510 - L2 LINE L2 -191 3081 2882 197 279 49 0 chr3 10595169 10595230 -207441928 - MIR SINE MIR -151 111 48 2319 55 41 10 chr3 10595821 10596114 -207441044 - AluY SINE Alu -9 302 1 443 284 40 27 chr3 10596290 10596438 -207440720 - MIR SINE MIR -3 259 110 2243 126 0 0 chr3 10597408 10597709 -207439449 - AluSq SINE Alu -10 303 3 906 137 167 18 chr3 10597716 10597943 -207439215 - L1MA8 LINE L1 0 6291 6031 465 292 19 19 chr3 10599034 10599188 -207437970 - MIR SINE MIR 0 262 109 425 84 0 84 chr3 10599228 10599299 -207437859 - AluY SINE Alu -45 266 202 1320 171 54 0 chr3 10599602 10599658 -207437500 + Tigger3(Golem) DNA MER2_type 2 54 -2974 207 0 0 0 chr3 10599667 10599690 -207437468 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 1597 135 96 4 chr3 10599690 10599940 -207437218 - AluSx SINE Alu -22 290 14 1320 171 54 0 chr3 10599940 10600182 -207436976 + Tigger3(Golem) DNA MER2_type 54 3028 0 2358 93 0 3 chr3 10600199 10600511 -207436647 + AluY SINE Alu 1 311 0 915 196 127 18 chr3 10600524 10600744 -207436414 - MIR SINE MIR -13 249 6 2444 131 120 0 chr3 10600978 10601452 -207435706 + L1PA16 LINE L1 5635 6165 -1 27 0 0 0 chr3 10601496 10601523 -207435635 + AT_rich Low_complexity Low_complexity 1 27 0 305 353 75 8 chr3 10604941 10605074 -207432084 + MIR SINE MIR 29 170 -92 2542 67 3 3 chr3 10605273 10605586 -207431572 + AluSp SINE Alu 1 313 0 297 0 0 0 chr3 10605759 10605792 -207431366 + (CA)n Simple_repeat Simple_repeat 2 34 0 498 350 51 5 chr3 10606060 10606274 -207430884 - MIR SINE MIR -38 224 1 722 192 13 98 chr3 10606829 10607053 -207430105 + MER3 DNA MER1_type 5 209 0 205 191 0 0 chr3 10613604 10613646 -207423512 + (TAA)n Simple_repeat Simple_repeat 1 42 0 211 326 141 0 chr3 10614649 10614741 -207422417 + MIR SINE MIR 45 149 -113 2199 123 0 0 chr3 10614868 10615178 -207421980 - AluSg SINE Alu 0 310 1 306 302 63 0 chr3 10615858 10615981 -207421177 - MIR SINE MIR -68 140 39 186 133 0 0 chr3 10616185 10616215 -207420943 + (T)n Simple_repeat Simple_repeat 1 30 0 392 240 232 0 chr3 10617401 10617526 -207419632 + MIR SINE MIR 107 260 -2 204 243 27 95 chr3 10618108 10618182 -207418976 - MER5A DNA MER1_type -103 86 18 783 275 25 21 chr3 10618818 10619058 -207418100 + MIR SINE MIR 16 256 -6 793 220 59 0 chr3 10619100 10619286 -207417872 - MER3 DNA MER1_type -12 197 1 279 240 175 39 chr3 10620544 10620678 -207416480 - MIR SINE MIR -62 146 36 881 276 35 0 chr3 10621536 10621768 -207415390 - MIR SINE MIR -16 246 7 486 220 9 0 chr3 10621834 10621943 -207415215 - MER20 DNA MER1_type 0 219 110 2338 86 3 10 chr3 10624518 10624821 -207412337 - AluY SINE Alu -10 301 1 183 370 74 0 chr3 10625063 10625144 -207412014 + L2 LINE L2 3151 3237 -35 330 276 234 0 chr3 10625437 10625582 -207411576 - MER5A DNA MER1_type 0 189 11 440 244 40 45 chr3 10626202 10626378 -207410780 - MER5B DNA MER1_type -3 175 1 863 230 6 0 chr3 10626401 10626566 -207410592 + MER5A DNA MER1_type 6 171 -18 277 313 0 12 chr3 10626802 10626885 -207410273 - L3 LINE CR1 -92 1485 1404 375 327 46 0 chr3 10626885 10627038 -207410120 - MIR SINE MIR -24 238 79 417 307 153 70 chr3 10628844 10629287 -207407871 - L2 LINE L2 -338 2976 2497 975 264 105 24 chr3 10629678 10630060 -207407098 - MER77 LTR ERV1 -15 590 178 216 0 0 0 chr3 10631150 10631174 -207405984 + (T)n Simple_repeat Simple_repeat 1 24 0 292 279 27 27 chr3 10631632 10631743 -207405415 - L2 LINE L2 -184 3088 2978 211 200 43 0 chr3 10632061 10632131 -207405027 + (TA)n Simple_repeat Simple_repeat 1 73 0 22 80 0 0 chr3 10632449 10632499 -207404659 + AT_rich Low_complexity Low_complexity 1 50 0 198 286 69 57 chr3 10634066 10634241 -207402917 + L2 LINE L2 2937 3113 -159 617 251 108 71 chr3 10634387 10634792 -207402366 - L2 LINE L2 -185 3128 2712 246 281 108 19 chr3 10635365 10635481 -207401677 + MIR SINE MIR 51 172 -67 185 154 26 0 chr3 10635626 10635665 -207401493 + CT-rich Low_complexity Low_complexity 2 41 0 344 207 0 0 chr3 10635859 10635941 -207401217 - L1MB1 LINE L1 -4 6185 6104 1103 221 58 68 chr3 10635995 10636344 -207400814 - MLT1C LTR MaLR -75 392 46 2222 109 10 19 chr3 10636344 10636657 -207400501 - AluSx SINE Alu -2 310 1 1103 221 58 68 chr3 10636657 10636701 -207400457 - MLT1C LTR MaLR -421 46 3 381 265 105 25 chr3 10636724 10636886 -207400272 + MIR SINE MIR 12 186 -76 276 30 0 0 chr3 10637011 10637044 -207400114 + (T)n Simple_repeat Simple_repeat 1 33 0 414 266 219 0 chr3 10637706 10637834 -207399324 + MER5A DNA MER1_type 27 182 -7 1569 177 23 43 chr3 10638397 10638697 -207398461 + AluJo SINE Alu 1 294 -18 505 279 110 50 chr3 10638746 10638965 -207398193 - MIR SINE MIR -2 260 29 546 253 188 10 chr3 10641262 10641464 -207395694 + MIR SINE MIR 25 262 0 1989 82 0 0 chr3 10642750 10642995 -207394163 + AluY SINE Alu 1 245 -66 423 0 0 0 chr3 10642999 10643046 -207394112 + (CA)n Simple_repeat Simple_repeat 2 48 0 214 313 0 24 chr3 10643155 10643238 -207393920 + (ATG)n Simple_repeat Simple_repeat 3 83 0 314 337 112 5 chr3 10643253 10643458 -207393700 - MIR SINE MIR -34 228 2 238 191 43 0 chr3 10643988 10644035 -207393123 + L2 LINE L2 3224 3272 0 618 273 12 12 chr3 10644131 10644292 -207392866 + MIR SINE MIR 92 252 -10 609 250 20 46 chr3 10645461 10645657 -207391501 - MIR SINE MIR -4 258 69 2052 126 17 0 chr3 10645668 10645961 -207391197 - AluSx SINE Alu -14 298 1 342 67 0 0 chr3 10646027 10646072 -207391086 - Alu SINE Alu -20 282 238 294 266 184 5 chr3 10646219 10646426 -207390732 - L1MC4 LINE L1 -18 8024 7781 1548 174 11 14 chr3 10646798 10647074 -207390084 + AluJo SINE Alu 13 287 -25 1244 158 4 79 chr3 10647975 10648240 -207388918 - AluJo SINE Alu -8 304 60 368 320 56 32 chr3 10648282 10648532 -207388626 - L2 LINE L2 -104 3209 2954 468 0 0 0 chr3 10649833 10649885 -207387273 + (TA)n Simple_repeat Simple_repeat 1 52 0 531 259 99 28 chr3 10649909 10650233 -207386925 - L1MC4 LINE L1 -163 7879 7533 313 276 69 83 chr3 10650331 10650548 -207386610 - L1ME4a LINE L1 -246 5875 5662 220 330 140 10 chr3 10650911 10651011 -207386147 + L2 LINE L2 3150 3262 -10 1267 252 119 50 chr3 10651414 10652038 -207385120 - PABL_B LTR ERV1 0 667 1 2187 253 88 10 chr3 10652314 10652920 -207384238 - MER82 DNA MER2_type 0 653 1 2337 91 0 0 chr3 10652927 10653089 -207384069 - AluSc SINE Alu -13 296 132 2274 119 0 0 chr3 10653089 10653392 -207383766 - AluSg SINE Alu -7 303 1 2337 91 0 0 chr3 10653392 10653525 -207383633 - AluSc SINE Alu -176 133 1 228 35 0 0 chr3 10653525 10653554 -207383604 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 514 291 0 8 chr3 10653561 10653688 -207383470 + L2 LINE L2 3180 3305 -8 228 258 30 98 chr3 10653691 10653823 -207383335 + L2 LINE L2 3149 3271 -1 2733 173 61 34 chr3 10654630 10655271 -207381887 + LTR8A LTR ERV1 1 658 -69 1006 50 0 0 chr3 10655271 10655391 -207381767 - AluY SINE Alu -18 293 174 329 175 0 0 chr3 10655392 10655449 -207381709 + LTR8A LTR ERV1 652 708 -19 2634 102 56 0 chr3 10655976 10656389 -207380769 - MER41A LTR ERV1 -18 536 101 1647 154 145 10 chr3 10656411 10656808 -207380350 - MER61C LTR ERV1 0 434 1 726 96 0 0 chr3 10656808 10656912 -207380246 - MER41B LTR ERV1 -531 104 1 314 325 0 0 chr3 10658739 10658816 -207378342 + L2 LINE L2 3237 3313 0 543 258 94 21 chr3 10659078 10659448 -207377710 - L1ME4a LINE L1 -473 5648 5293 2356 98 0 3 chr3 10661063 10661368 -207375790 - AluSq SINE Alu -9 304 1 231 211 35 0 chr3 10661417 10661474 -207375684 - MIR SINE MIR -114 94 36 239 217 17 17 chr3 10661559 10661619 -207375539 + MIR SINE MIR 111 170 -92 256 278 124 10 chr3 10662816 10662913 -207374245 + L2 LINE L2 3206 3313 0 22 35 0 0 chr3 10664120 10664149 -207373009 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 10664465 10664486 -207372672 + AT_rich Low_complexity Low_complexity 1 21 0 508 286 59 20 chr3 10665646 10665849 -207371309 + MIR SINE MIR 51 261 -1 779 313 94 23 chr3 10666439 10666823 -207370335 + L2 LINE L2 2863 3273 -40 1808 240 93 39 chr3 10666825 10667513 -207369645 - MER50 LTR ERV1 0 734 10 238 333 70 26 chr3 10667896 10668052 -207369106 + MIR3 SINE MIR 16 178 -30 * 437 343 152 49 chr3 10668028 10668923 -207368235 - L3 LINE CR1 -400 1177 191 352 295 195 0 chr3 10669374 10669521 -207367637 - MER5A DNA MER1_type -1 188 13 646 281 30 0 chr3 10669521 10669688 -207367470 - MER5B DNA MER1_type -3 175 4 810 207 39 22 chr3 10669700 10669879 -207367279 - MER5A DNA MER1_type -1 188 7 381 279 25 16 chr3 10670498 10670620 -207366538 - L2 LINE L2 -4 3309 3187 485 273 107 34 chr3 10671293 10671498 -207365660 - MIR SINE MIR -31 231 12 2049 145 35 30 chr3 10671938 10672311 -207364847 + THE1C LTR MaLR 1 375 0 305 197 14 0 chr3 10672406 10672477 -207364681 + (TG)n Simple_repeat Simple_repeat 2 73 0 1041 224 121 35 chr3 10672482 10672822 -207364336 + MLT1A2 LTR MaLR 4 372 -2 849 295 78 12 chr3 10672908 10673117 -207364041 + L1ME LINE L1 5280 5474 -688 1688 175 20 20 chr3 10673117 10673414 -207363744 + AluSx SINE Alu 1 297 -15 849 295 78 12 chr3 10673414 10673703 -207363455 + L1ME LINE L1 5474 5811 -351 308 310 17 43 chr3 10674214 10674368 -207362790 - MIR SINE MIR -48 160 7 4197 120 23 2 chr3 10674677 10675320 -207361838 + L1PA13 LINE L1 5504 6160 -3 346 288 27 9 chr3 10675445 10675556 -207361602 - MER81 DNA DNA -1 113 1 325 149 15 0 chr3 10675590 10675657 -207361501 + MADE1 DNA Mariner 1 68 -12 249 108 0 0 chr3 10675707 10675744 -207361414 - MADE1 DNA Mariner -43 37 1 1845 192 6 6 chr3 10676576 10676930 -207360228 + MLT1A1 LTR MaLR 12 365 0 550 212 73 15 chr3 10676930 10677067 -207360091 - MER5A DNA MER1_type -39 150 6 411 298 87 36 chr3 10677719 10677971 -207359187 - MLT1J LTR MaLR 0 511 247 338 290 42 23 chr3 10679440 10679702 -207357456 + L1MEc LINE L1 2128 2394 -4002 704 190 40 17 chr3 10679703 10679877 -207357281 + MLT1D LTR MaLR 1 178 -327 341 143 0 0 chr3 10679878 10679934 -207357224 - THE1B LTR MaLR -1 363 308 1575 169 115 36 chr3 10679975 10680394 -207356764 + LTR10A LTR ERV1 97 548 -61 1511 138 44 60 chr3 10680406 10680724 -207356434 - THE1B LTR MaLR -51 313 1 855 232 107 12 chr3 10680741 10681060 -207356098 + MLT1D LTR MaLR 157 505 0 230 179 18 0 chr3 10681060 10681116 -207356042 + L1MEc LINE L1 2351 2407 -3808 182 219 24 0 chr3 10682484 10682525 -207354633 + L2 LINE L2 3270 3311 -2 186 229 33 49 chr3 10682609 10682670 -207354488 - MIR3 SINE MIR -1 207 148 466 341 11 37 chr3 10683709 10683982 -207353176 - L3 LINE CR1 -653 924 659 198 206 0 0 chr3 10684191 10684225 -207352933 + L2 LINE L2 3204 3237 -35 6747 102 30 34 chr3 10684376 10685452 -207351706 + MER11C LTR ERVK 1 1071 0 191 309 155 0 chr3 10686250 10686334 -207350824 - MIR SINE MIR -3 259 163 1350 255 60 11 chr3 10686362 10686797 -207350361 + MLT1C LTR MaLR 12 467 0 240 314 22 100 chr3 10686808 10687037 -207350121 + MIR SINE MIR 40 250 -12 229 280 168 19 chr3 10687066 10687173 -207349985 - MIR SINE MIR -108 154 32 187 293 40 27 chr3 10687995 10688070 -207349088 - MIR SINE MIR -111 97 22 207 0 0 0 chr3 10688643 10688666 -207348492 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 209 309 57 24 chr3 10689263 10689386 -207347772 + MIR SINE MIR 20 146 -116 1888 274 20 36 chr3 10689987 10690623 -207346535 + MLT1E2 LTR MaLR 1 626 0 2616 100 17 3 chr3 10690626 10690985 -207346173 + THE1B LTR MaLR 1 364 0 2431 110 0 0 chr3 10691556 10691865 -207345293 - AluSc SINE Alu 0 309 1 666 356 95 11 chr3 10691865 10692328 -207344830 + L2 LINE L2 1982 2483 -831 241 242 16 16 chr3 10692755 10692817 -207344341 + L3 LINE CR1 1515 1576 -1 766 297 90 30 chr3 10693328 10693729 -207343429 - LTR16C LTR ERVL 0 491 67 1914 174 35 30 chr3 10693741 10694289 -207342869 - MLT2A2 LTR ERVL 0 554 1 190 333 144 0 chr3 10695868 10695979 -207341179 - L2 LINE L2 -4 3268 3142 295 276 66 33 chr3 10696021 10696173 -207340985 - MIR SINE MIR -4 258 102 254 343 80 34 chr3 10696264 10696439 -207340719 - L2 LINE L2 -210 3062 2880 417 261 20 7 chr3 10697183 10697380 -207339778 - MLT1H1 LTR MaLR -13 542 300 354 252 0 34 chr3 10697420 10697539 -207339619 - L1MA9 LINE L1 -38 6274 6160 287 254 55 27 chr3 10697554 10697664 -207339494 + L1MA9 LINE L1 5933 6045 -267 388 261 92 7 chr3 10697764 10697906 -207339252 - MLT1H1 LTR MaLR -364 191 38 293 294 0 0 chr3 10698131 10698199 -207338959 - MER58 DNA MER1_type -2350 70 3 585 276 84 28 chr3 10699068 10699282 -207337876 + MIR SINE MIR 36 261 -1 481 272 126 50 chr3 10699414 10699653 -207337505 - MIR SINE MIR 0 262 6 260 67 0 67 chr3 10700096 10700156 -207337002 + (TA)n Simple_repeat Simple_repeat 1 56 0 1039 157 0 0 chr3 10700160 10700313 -207336845 - FRAM SINE Alu -24 152 1 417 303 0 0 chr3 10700465 10700564 -207336594 - L2 LINE L2 0 3272 3174 2359 84 10 0 chr3 10700695 10700992 -207336166 + AluSx SINE Alu 1 300 -12 468 311 39 22 chr3 10701202 10701382 -207335776 - MER5A DNA MER1_type -6 183 1 2358 95 0 3 chr3 10701668 10701964 -207335194 - AluSg SINE Alu -15 295 1 846 116 0 0 chr3 10702009 10702138 -207335020 + (TA)n Simple_repeat Simple_repeat 1 129 0 243 294 158 20 chr3 10702642 10702788 -207334370 + MIR SINE MIR 26 191 -71 2132 193 31 5 chr3 10702951 10703366 -207333792 + MSTB LTR MaLR 1 426 0 678 249 21 21 chr3 10703971 10704160 -207332998 + MER5A DNA MER1_type 1 189 0 243 240 19 67 chr3 10704525 10704629 -207332529 + LTR67 LTR ERVL 442 540 -17 3266 149 22 77 chr3 10704980 10705709 -207331449 - LTR8 LTR ERV1 -2 689 1 4925 50 6 0 chr3 10706021 10706684 -207330474 - L1PA4 LINE L1 -2238 3908 3242 12088 35 1 1 chr3 10706684 10708920 -207328238 + L1PA4 LINE L1 3916 6154 -1 1455 117 40 18 chr3 10709076 10709299 -207327859 - MER30 DNA MER1_type -1 229 2 885 271 23 0 chr3 10709432 10709650 -207327508 - MER58A DNA MER1_type -1 223 1 326 286 121 16 chr3 10710820 10711002 -207326156 + L2 LINE L2 2565 2765 -549 299 331 54 15 chr3 10711006 10711136 -207326022 + MER5B DNA MER1_type 1 135 -43 463 241 25 25 chr3 10711136 10711294 -207325864 - L1MD2 LINE L1 -173 6186 6029 191 361 0 14 chr3 10711346 10711418 -207325740 + MER5A DNA MER1_type 118 188 -1 289 208 57 0 chr3 10711592 10711645 -207325513 + L2 LINE L2 3202 3257 -15 192 97 0 0 chr3 10711681 10711712 -207325446 + (CA)n Simple_repeat Simple_repeat 2 32 0 185 371 29 9 chr3 10711754 10711859 -207325299 - MIR SINE MIR -154 108 2 790 222 5 31 chr3 10712616 10712810 -207324348 - MER5A DNA MER1_type 0 189 1 404 287 19 0 chr3 10713069 10713177 -207323981 + MER5B DNA MER1_type 3 112 -66 191 225 0 0 chr3 10713204 10713244 -207323914 + MIR SINE MIR 159 198 -64 286 253 40 0 chr3 10713263 10713338 -207323820 - MIR SINE MIR -8 254 177 2570 145 61 10 chr3 10713494 10714071 -207323087 - LTR12 LTR ERV1 -226 2212 55 343 219 73 21 chr3 10714081 10714177 -207322981 + MIR SINE MIR 88 188 -74 839 293 11 15 chr3 10714206 10714472 -207322686 + L1MCb LINE L1 1 265 -5780 397 212 126 27 chr3 10714476 10714515 -207322643 - L1 LINE L1 -2486 3660 3626 2169 118 0 17 chr3 10714515 10714812 -207322346 + AluSx SINE Alu 1 292 -20 397 212 126 27 chr3 10714812 10714937 -207322221 - L1 LINE L1 -2520 3626 3495 492 312 95 9 chr3 10714982 10715213 -207321945 + L1MCb LINE L1 312 562 -5483 1279 246 82 29 chr3 10715287 10715799 -207321359 + L1MCb LINE L1 554 1092 -4953 1119 195 36 115 chr3 10715806 10716196 -207320962 + MLT1A1 LTR MaLR 7 365 0 304 216 23 0 chr3 10716196 10716284 -207320874 + L1MCb LINE L1 1090 1179 -5385 1217 142 176 31 chr3 10716284 10716545 -207320613 + AluSg SINE Alu 2 300 0 1557 190 70 24 chr3 10716809 10717182 -207319976 + MLT1B LTR MaLR 1 390 0 1820 150 13 29 chr3 10717517 10717823 -207319335 + AluSx SINE Alu 6 306 -6 2472 257 51 7 chr3 10717881 10719102 -207318056 - L1M4 LINE L1 -1537 4609 3280 2855 174 19 4 chr3 10719437 10719972 -207317186 + MER74A LTR ERVL 16 558 0 647 202 0 0 chr3 10720174 10720283 -207316875 + FLAM_A SINE Alu 15 123 -19 366 23 0 0 chr3 10720499 10720542 -207316616 + (TG)n Simple_repeat Simple_repeat 2 44 0 248 289 116 26 chr3 10721286 10721476 -207315682 + L1MC/D LINE L1 5569 5775 -2033 1453 118 32 0 chr3 10721503 10721723 -207315435 + MER30 DNA MER1_type 2 228 -2 218 82 0 61 chr3 10723133 10723182 -207313976 + (CAAAA)n Simple_repeat Simple_repeat 4 49 0 231 314 42 25 chr3 10723347 10723465 -207313693 - L2 LINE L2 -1 3312 3193 193 281 104 30 chr3 10724298 10724433 -207312725 - MIR SINE MIR -43 219 75 795 266 78 33 chr3 10724739 10725230 -207311928 + L2 LINE L2 2794 3313 0 284 163 0 0 chr3 10725406 10725455 -207311703 + MER39 LTR ERV1 1 49 -658 2388 186 48 18 chr3 10725541 10726112 -207311046 + MER39 LTR ERV1 69 707 0 378 315 0 0 chr3 10726401 10726509 -207310649 - MIR SINE MIR -41 221 114 1479 192 20 30 chr3 10726804 10727210 -207309948 + LTR37A LTR ERV1 23 424 -2 313 0 21310 0 chr3 10728041 10728154 -207309004 + L1MC4a LINE L1 7425 5125 -2683 412 291 17 62 chr3 10728154 10728205 -207308953 - MER5B DNA MER1_type -4 174 122 1871 107 4 4 chr3 10728205 10728554 -207308604 + AluSx SINE Alu 30 378 0 412 291 17 62 chr3 10728554 10728678 -207308480 - MER5B DNA MER1_type -56 122 4 313 0 21310 0 chr3 10728678 10728692 -207308466 + L1MC4a LINE L1 5125 4858 -2950 978 169 38 6 chr3 10728692 10728875 -207308283 - MER5A DNA MER1_type 0 189 1 313 0 21310 0 chr3 10728875 10729096 -207308062 + L1MC4a LINE L1 4857 7699 -109 180 260 104 52 chr3 10729797 10729874 -207307284 + L2 LINE L2 2624 2704 -610 856 221 44 58 chr3 10729875 10730101 -207307057 + MER58A DNA MER1_type 1 223 -1 433 264 0 0 chr3 10730122 10730213 -207306945 + MER5A DNA MER1_type 12 102 -87 1612 183 131 3 chr3 10730699 10731082 -207306076 + MSTB1 LTR MaLR 1 432 0 1071 198 102 23 chr3 10731466 10731810 -207305348 - LTR37A LTR ERV1 0 426 56 627 228 21 32 chr3 10733039 10733278 -207303880 - MER39 LTR ERV1 -3 680 422 443 311 24 67 chr3 10733404 10733613 -207303545 - MIR SINE MIR -14 248 49 196 306 32 0 chr3 10734356 10734418 -207302740 - L2 LINE L2 0 3272 3209 265 286 0 14 chr3 10734421 10734491 -207302667 - L2 LINE L2 -4 3309 3241 591 260 86 83 chr3 10734606 10735203 -207301955 + MER77 LTR ERV1 87 601 -4 356 275 118 22 chr3 10735232 10735461 -207301697 - L2 LINE L2 -68 3245 2995 587 236 188 0 chr3 10735800 10735944 -207301214 - MER5A DNA MER1_type 0 189 19 815 215 83 31 chr3 10736004 10736292 -207300866 - MER33 DNA MER1_type -21 303 1 182 208 21 0 chr3 10736483 10736531 -207300627 + (TA)n Simple_repeat Simple_repeat 2 50 0 450 0 0 0 chr3 10736535 10736585 -207300573 + (CA)n Simple_repeat Simple_repeat 2 51 0 21 36 0 0 chr3 10737105 10737133 -207300025 + AT_rich Low_complexity Low_complexity 1 28 0 412 280 136 19 chr3 10737464 10737678 -207299480 - MIR SINE MIR -15 247 9 294 378 82 30 chr3 10737687 10737954 -207299204 - L3 LINE CR1 -163 1414 1134 1640 257 61 18 chr3 10738269 10738760 -207298398 + MLT1H LTR MaLR 15 526 -23 595 274 30 25 chr3 10739704 10739901 -207297257 + MIR SINE MIR 4 201 -61 246 250 159 11 chr3 10740164 10740252 -207296906 + MIR SINE MIR 39 139 -69 267 105 26 0 chr3 10740474 10740512 -207296646 + L2 LINE L2 3215 3253 -19 397 325 86 0 chr3 10740850 10741013 -207296145 - MIR SINE MIR -62 200 24 339 335 112 6 chr3 10741504 10741674 -207295484 - MIR SINE MIR -12 250 63 1224 121 185 0 chr3 10741676 10741925 -207295233 + L1MA5A LINE L1 5993 6287 -10 270 206 79 0 chr3 10742084 10742147 -207295011 + MER103 DNA DNA 18 85 -81 317 317 65 4 chr3 10742644 10742874 -207294284 + L1ME3A LINE L1 5628 5871 -299 23 54 0 0 chr3 10743003 10743040 -207294118 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr3 10743222 10743246 -207293912 + AT_rich Low_complexity Low_complexity 1 24 0 1481 174 81 3 chr3 10743422 10743732 -207293426 - MLT1A1 LTR MaLR 0 365 32 24 32 0 0 chr3 10743809 10743840 -207293318 + AT_rich Low_complexity Low_complexity 1 31 0 24 53 0 0 chr3 10744986 10745024 -207292134 + AT_rich Low_complexity Low_complexity 1 38 0 249 221 13 0 chr3 10745175 10745252 -207291906 + L1MDb LINE L1 1271 1348 -5195 364 298 14 106 chr3 10745457 10745749 -207291409 + L1MDb LINE L1 1656 1920 -4620 9567 205 89 25 chr3 10745756 10748845 -207288313 + L1MA4A LINE L1 8 2899 -4046 1768 178 0 24 chr3 10748845 10749174 -207287984 - AluJb SINE Alu 0 322 1 9567 205 89 25 chr3 10749174 10749197 -207287961 + L1MA4A LINE L1 2899 2919 -4026 1781 144 0 50 chr3 10749197 10749496 -207287662 - AluSg SINE Alu -26 284 1 9567 205 89 25 chr3 10749496 10752920 -207284238 + L1MA4A LINE L1 2919 6945 0 807 219 0 12 chr3 10753284 10753444 -207283714 - FRAM SINE Alu -18 158 1 1717 249 93 53 chr3 10753859 10754896 -207282262 + L1MC4 LINE L1 6965 8042 0 1080 275 144 21 chr3 10755177 10756479 -207280679 + L1ME3A LINE L1 4465 5936 -234 2051 120 3 20 chr3 10756698 10756998 -207280160 + AluSx SINE Alu 1 295 -17 320 304 9 9 chr3 10757069 10757181 -207279977 - MLT1I LTR MaLR -6 403 292 323 202 12 24 chr3 10757220 10757304 -207279854 - MLT1I LTR MaLR -226 183 101 279 296 0 96 chr3 10757471 10757586 -207279572 + L2 LINE L2 2919 3022 -250 540 306 35 39 chr3 10758962 10759009 -207278149 - MIR SINE MIR -1 261 215 2217 172 16 21 chr3 10759009 10759439 -207277719 + MSTA LTR MaLR 1 428 0 540 306 35 39 chr3 10759439 10759649 -207277509 - MIR SINE MIR -47 215 5 185 266 127 13 chr3 10760336 10760415 -207276743 - MIR SINE MIR -29 233 146 189 404 0 0 chr3 10760432 10760541 -207276617 - L3 LINE CR1 -731 846 738 341 308 151 6 chr3 10761506 10761678 -207275480 - MIR SINE MIR -10 252 56 186 262 0 0 chr3 10761705 10761747 -207275411 + MER5B DNA MER1_type 12 53 -125 29 28 0 0 chr3 10761881 10761917 -207275241 + AT_rich Low_complexity Low_complexity 1 36 0 266 310 99 34 chr3 10762133 10762271 -207274887 + L1M4 LINE L1 3352 3480 -2666 180 0 0 0 chr3 10762271 10762291 -207274867 + (CA)n Simple_repeat Simple_repeat 2 21 0 266 310 99 34 chr3 10762291 10762544 -207274614 + L1M4 LINE L1 3480 3715 -2431 2189 105 14 3 chr3 10762544 10762839 -207274319 + AluSg SINE Alu 1 298 -12 266 310 99 34 chr3 10762839 10763013 -207274145 + L1M4 LINE L1 3715 3955 -2191 259 130 56 0 chr3 10763211 10763265 -207273893 + FRAM SINE Alu 44 100 -66 562 209 86 49 chr3 10763377 10763586 -207273572 + MLT1C LTR MaLR 8 234 -233 824 136 0 0 chr3 10763636 10763746 -207273412 - FLAM_C SINE Alu -25 118 9 254 290 133 33 chr3 10763996 10764417 -207272741 + L1M4 LINE L1 4382 4844 -1302 269 115 0 19 chr3 10764423 10764475 -207272683 + MER5C DNA MER1_type 74 124 -200 226 200 0 86 chr3 10764499 10764569 -207272589 + MER5C DNA MER1_type 240 303 -21 344 273 35 87 chr3 10764962 10765134 -207272024 - MIR3 SINE MIR -6 202 40 2200 101 7 3 chr3 10765603 10765900 -207271258 - AluSx SINE Alu -14 298 1 254 316 23 18 chr3 10765932 10766103 -207271055 - L1ME LINE L1 -220 5901 5730 2221 125 0 13 chr3 10766355 10766666 -207270492 + AluSx SINE Alu 1 307 -5 243 308 64 39 chr3 10767125 10767281 -207269877 + MER5A DNA MER1_type 27 186 -3 444 258 174 13 chr3 10767352 10767507 -207269651 - MER5A DNA MER1_type -1 188 9 309 344 51 62 chr3 10767622 10767817 -207269341 + MIR3 SINE MIR 16 208 0 851 261 111 2 chr3 10768543 10768949 -207268209 + MER113 DNA MER1_type? 9 458 -63 2245 138 0 0 chr3 10769315 10769627 -207267531 + AluSx SINE Alu 1 312 0 368 354 46 11 chr3 10770584 10770759 -207266399 + MIR SINE MIR 21 201 -61 231 277 71 0 chr3 10771479 10771620 -207265538 - L1ME4a LINE L1 -4 6117 5967 23 0 0 0 chr3 10771666 10771689 -207265469 + AT_rich Low_complexity Low_complexity 1 23 0 440 311 60 48 chr3 10772777 10773028 -207264130 + MIR SINE MIR 8 261 -1 193 162 88 88 chr3 10773022 10773090 -207264068 - MIR SINE MIR -111 151 84 * 366 299 68 7 chr3 10773326 10773473 -207263685 - L3 LINE CR1 -794 783 628 22 56 0 0 chr3 10774374 10774410 -207262748 + AT_rich Low_complexity Low_complexity 1 36 0 1217 57 13 0 chr3 10774489 10774647 -207262511 - L1PA4 LINE L1 -1 6154 5995 34 53 0 0 chr3 10774659 10774697 -207262461 + GC_rich Low_complexity Low_complexity 1 38 0 374 300 29 43 chr3 10775246 10775386 -207261772 + L2 LINE L2 2621 2758 -556 197 162 0 27 chr3 10775766 10775803 -207261355 + L2 LINE L2 3183 3218 -95 203 321 75 38 chr3 10775997 10776103 -207261055 - MIR3 SINE MIR -92 116 7 2399 65 0 19 chr3 10776320 10776630 -207260528 + AluSc SINE Alu 1 304 -5 246 312 26 26 chr3 10776670 10776747 -207260411 + MER5A DNA MER1_type 4 80 -109 324 274 32 95 chr3 10777248 10777438 -207259720 + MER5B DNA MER1_type 1 178 0 940 242 43 10 chr3 10778886 10779194 -207257964 + L1ME2 LINE L1 5818 6134 -30 191 374 0 30 chr3 10780946 10781045 -207256113 - L2 LINE L2 -49 3264 3169 874 211 0 63 chr3 10781045 10781268 -207255890 - MER20 DNA MER1_type -1 218 10 398 331 150 30 chr3 10781349 10781761 -207255397 - L2 LINE L2 -200 3113 2647 808 239 109 13 chr3 10782662 10782900 -207254258 - MIR SINE MIR 0 262 2 207 0 0 0 chr3 10783925 10783948 -207253210 + (A)n Simple_repeat Simple_repeat 1 23 0 2298 91 0 28 chr3 10783949 10784269 -207252889 + AluY SINE Alu 1 311 0 231 265 41 20 chr3 10785173 10785271 -207251887 + L1MC4 LINE L1 7926 8025 -17 371 253 133 19 chr3 10785407 10785565 -207251593 - MIR SINE MIR 0 262 87 570 263 21 16 chr3 10785623 10785817 -207251341 - L1ME3A LINE L1 -34 6136 5942 681 237 25 30 chr3 10786501 10786737 -207250421 + MER106A DNA MER1_type 1 235 -1 207 361 84 40 chr3 10788961 10789210 -207247948 + L2 LINE L2 2645 2904 -410 213 283 17 0 chr3 10789296 10789356 -207247802 - MIR SINE MIR 0 262 202 797 246 60 30 chr3 10789521 10789855 -207247303 - L1ME1 LINE L1 -5 6161 5818 2080 125 0 3 chr3 10789859 10790146 -207247012 - AluSc SINE Alu -23 286 1 228 35 0 0 chr3 10790146 10790175 -207246983 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 514 291 0 8 chr3 10790182 10790309 -207246849 + L2 LINE L2 3180 3305 -8 228 258 30 98 chr3 10790312 10790444 -207246714 + L2 LINE L2 3149 3271 -1 2718 176 59 34 chr3 10791251 10791893 -207245265 + LTR8A LTR ERV1 1 658 -69 2181 56 42 11 chr3 10791893 10792177 -207244981 - AluYa5 SINE Alu -18 293 1 443 284 40 27 chr3 10792353 10792501 -207244657 - MIR SINE MIR -3 259 110 2243 126 0 0 chr3 10793471 10793772 -207243386 - AluSq SINE Alu -10 303 3 906 137 167 18 chr3 10793779 10794006 -207243152 - L1MA8 LINE L1 0 6291 6031 211 222 146 94 chr3 10795034 10795205 -207241953 + MIR SINE MIR 73 252 -10 480 304 19 19 chr3 10796318 10796479 -207240679 + MER5B DNA MER1_type 1 161 -17 1351 202 79 20 chr3 10796618 10796974 -207240184 - MLT1B LTR MaLR -11 379 3 392 240 232 0 chr3 10798118 10798243 -207238915 + MIR SINE MIR 107 260 -2 204 243 27 95 chr3 10798825 10798899 -207238259 - MER5A DNA MER1_type -103 86 18 783 275 25 21 chr3 10799535 10799775 -207237383 + MIR SINE MIR 16 256 -6 793 220 59 0 chr3 10799817 10800003 -207237155 - MER3 DNA MER1_type -12 197 1 279 240 175 39 chr3 10801261 10801395 -207235763 - MIR SINE MIR -62 146 36 881 276 35 0 chr3 10802253 10802485 -207234673 - MIR SINE MIR -16 246 7 486 220 9 0 chr3 10802551 10802660 -207234498 - MER20 DNA MER1_type 0 219 110 219 340 60 50 chr3 10803303 10803403 -207233755 - L2 LINE L2 -184 3088 2988 1687 176 7 26 chr3 10803601 10803907 -207233251 + AluJo SINE Alu 1 300 -12 796 227 77 0 chr3 10804390 10804584 -207232574 - MER3 DNA MER1_type 0 209 1 2485 48 0 58 chr3 10804753 10805083 -207232075 - AluY SINE Alu 0 311 1 361 335 18 41 chr3 10805903 10806124 -207231034 + MIR SINE MIR 19 234 -28 1085 153 0 0 chr3 10806407 10806577 -207230581 - AluSg/x SINE Alu -7 305 136 505 237 15 0 chr3 10807850 10807981 -207229177 + MER94 DNA DNA 2 134 0 295 273 105 35 chr3 10808133 10808276 -207228882 + MIR SINE MIR 29 181 -81 253 297 73 70 chr3 10808624 10808897 -207228261 + L2 LINE L2 2907 3180 -133 224 292 67 58 chr3 10809472 10809592 -207227566 - MIR SINE MIR -51 211 91 303 297 11 11 chr3 10810258 10810349 -207226809 + MIR SINE MIR 2 92 -170 227 170 57 0 chr3 10811154 10811207 -207225951 - MLT1D LTR MaLR -401 104 49 324 293 153 19 chr3 10811613 10811770 -207225388 + MIR SINE MIR 58 235 -27 2163 120 3 22 chr3 10811902 10812218 -207224940 + AluSx SINE Alu 1 310 -2 270 0 0 0 chr3 10812242 10812272 -207224886 + (CA)n Simple_repeat Simple_repeat 1 30 0 307 288 72 85 chr3 10812861 10813097 -207224061 + L1MC4a LINE L1 5815 6047 -1761 1228 227 91 50 chr3 10813540 10813959 -207223199 + MER63B DNA MER1_type 1 436 0 194 338 93 0 chr3 10814065 10814204 -207222954 - MIR SINE MIR 0 262 111 2055 206 26 14 chr3 10814516 10814943 -207222215 - MSTB1 LTR MaLR 0 432 1 592 256 6 36 chr3 10815321 10815489 -207221669 - MER5B DNA MER1_type -10 168 6 2207 76 0 13 chr3 10815522 10815823 -207221335 + AluY SINE Alu 9 305 -6 28 29 0 0 chr3 10816000 10816035 -207221123 + AT_rich Low_complexity Low_complexity 1 35 0 1141 68 7 0 chr3 10816323 10816471 -207220687 + L1PA7 LINE L1 5999 6147 -7 185 324 28 39 chr3 10817073 10817189 -207219969 + MIR SINE MIR 7 89 -119 896 250 43 20 chr3 10817548 10817848 -207219310 + LTR16A LTR ERVL 95 401 -49 467 284 130 17 chr3 10818166 10818575 -207218583 - L1MC4 LINE L1 0 8042 7588 424 203 122 14 chr3 10818577 10818621 -207218537 - L1MA10 LINE L1 -2 6332 6289 2570 237 66 22 chr3 10818621 10819168 -207217990 - L1ME1 LINE L1 -44 6122 5601 2495 65 0 0 chr3 10819168 10819475 -207217683 - AluY SINE Alu -4 307 1 2570 237 66 22 chr3 10819475 10820547 -207216611 - L1ME1 LINE L1 -565 5601 4428 538 326 19 25 chr3 10820540 10820862 -207216296 - L1MC4 LINE L1 -452 7590 7271 * 186 231 0 0 chr3 10821467 10821506 -207215652 - L2 LINE L2 -17 3296 3258 1070 141 9 61 chr3 10825520 10825733 -207211425 - MLT2A2 LTR ERVL -251 202 1 216 289 144 10 chr3 10825733 10825837 -207211321 + MIR SINE MIR 90 207 -55 438 243 21 36 chr3 10827070 10827210 -207209948 - L2 LINE L2 -1 3312 3175 292 319 44 0 chr3 10828859 10828972 -207208186 + MIR SINE MIR 49 166 -96 23 0 0 0 chr3 10829115 10829138 -207208020 + AT_rich Low_complexity Low_complexity 1 23 0 59 88 0 0 chr3 10829680 10829782 -207207376 + AT_rich Low_complexity Low_complexity 1 102 0 2561 43 0 0 chr3 10829782 10830104 -207207054 - L1PA4 LINE L1 -134 6021 5700 719 34 0 0 chr3 10830104 10830192 -207206966 + L1PA4 LINE L1 5618 5705 -449 380 285 70 55 chr3 10831185 10831385 -207205773 - MER63A DNA MER1_type -3 207 5 252 0 0 0 chr3 10831560 10831588 -207205570 + (CAT)n Simple_repeat Simple_repeat 2 29 0 296 289 125 13 chr3 10831815 10831967 -207205191 + MIR SINE MIR 72 240 -22 241 291 9 55 chr3 10832170 10832280 -207204878 - L2 LINE L2 -873 2441 2337 684 216 30 82 chr3 10832673 10832904 -207204254 - MER58A DNA MER1_type 0 224 6 217 319 80 26 chr3 10832926 10833039 -207204119 + L2 LINE L2 3189 3307 -6 297 172 0 0 chr3 10834545 10834609 -207202549 + (TGGA)n Simple_repeat Simple_repeat 1 64 0 248 315 0 9 chr3 10834804 10834912 -207202246 - MER103 DNA DNA -48 118 12 314 209 0 30 chr3 10835929 10835996 -207201162 + L3 LINE CR1 1227 1291 -286 347 263 74 0 chr3 10836792 10836887 -207200271 + L2 LINE L2 3195 3296 -17 236 186 17 0 chr3 10836969 10837028 -207200130 + (TA)n Simple_repeat Simple_repeat 1 60 0 3467 78 13 0 chr3 10837534 10837981 -207199177 + MLT2A2 LTR ERVL 1 453 0 527 189 184 31 chr3 10837993 10838108 -207199050 + L1MA9 LINE L1 6019 6115 -197 2229 105 36 33 chr3 10838108 10838471 -207198687 - THE1B LTR MaLR 0 364 1 527 189 184 31 chr3 10838471 10838583 -207198575 + L1MA9 LINE L1 6115 6281 -31 4319 63 2 4 chr3 10838785 10839342 -207197816 + L1PA8A LINE L1 5563 6118 -13 432 234 98 103 chr3 10840690 10841096 -207196062 - LTR33A LTR ERVL 0 523 120 2049 139 0 26 chr3 10841865 10842167 -207194991 - AluSx SINE Alu -18 294 1 231 246 78 70 chr3 10842626 10842668 -207194490 + MIR SINE MIR 118 158 -104 1995 178 78 10 chr3 10842668 10843067 -207194091 + MSTB LTR MaLR 1 426 0 231 246 78 70 chr3 10843067 10843166 -207193992 + MIR SINE MIR 158 260 -2 189 371 73 8 chr3 10843555 10843679 -207193479 + MIR SINE MIR 118 249 -13 2289 102 0 41 chr3 10843714 10844029 -207193129 + AluSq SINE Alu 1 302 -11 203 171 0 0 chr3 10844513 10844554 -207192604 + (TA)n Simple_repeat Simple_repeat 1 41 0 232 203 109 70 chr3 10844618 10844746 -207192412 + MER113 DNA MER1_type? 3 135 -386 32 57 0 0 chr3 10844746 10844799 -207192359 + AT_rich Low_complexity Low_complexity 1 53 0 279 333 85 23 chr3 10845100 10845229 -207191929 + MIR3 SINE MIR 10 146 -62 30 0 0 0 chr3 10846023 10846053 -207191105 + AT_rich Low_complexity Low_complexity 1 30 0 2114 108 3 0 chr3 10846373 10846660 -207190498 - AluSq SINE Alu -25 288 1 346 202 36 0 chr3 10846983 10847067 -207190091 - MLT1I LTR MaLR -4 405 319 319 309 52 58 chr3 10847350 10847641 -207189517 + MLT1K LTR MaLR 138 426 -162 184 348 65 39 chr3 10847928 10848083 -207189075 + L2 LINE L2 2820 2978 -294 275 288 45 9 chr3 10848984 10849095 -207188063 + LTR67 LTR ERVL 409 523 -34 368 302 0 35 chr3 10850453 10850569 -207186589 + L2 LINE L2 3202 3313 0 1366 183 51 36 chr3 10850604 10850960 -207186198 + MLT1B LTR MaLR 30 390 0 271 296 84 0 chr3 10850962 10851104 -207186054 + L2 LINE L2 2749 2902 -412 220 318 83 30 chr3 10851212 10851344 -207185814 + L2 LINE L2 3134 3272 0 582 311 57 38 chr3 10851436 10851569 -207185589 + L1ME3A LINE L1 5465 5594 -576 879 210 23 27 chr3 10851569 10851788 -207185370 + MER20 DNA MER1_type 2 219 0 582 311 57 38 chr3 10851788 10852075 -207185083 + L1ME3A LINE L1 5594 5893 -277 1595 236 141 19 chr3 10853066 10853654 -207183504 + L1MC4 LINE L1 6485 7144 -898 341 206 0 0 chr3 10853654 10853727 -207183431 + L1MC4a LINE L1 7137 7209 -599 1478 211 17 34 chr3 10853731 10853971 -207183187 - MER2 DNA MER2_type 0 345 111 1147 122 117 0 chr3 10853971 10854176 -207182982 + MER30 DNA MER1_type 1 229 -1 1478 211 17 34 chr3 10854176 10854286 -207182872 - MER2 DNA MER2_type -234 111 1 1477 223 132 29 chr3 10854286 10854833 -207182325 + L1MC4 LINE L1 7295 7897 -145 1687 167 60 33 chr3 10855056 10855421 -207181737 - THE1C LTR MaLR 0 375 1 1817 183 6 10 chr3 10855878 10856190 -207180968 + AluSx SINE Alu 1 311 -1 487 336 82 66 chr3 10856219 10856659 -207180499 + L1M2 LINE L1 1 447 -6402 209 83 28 0 chr3 10857317 10857353 -207179805 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 12090 217 36 12 chr3 10857402 10861271 -207175887 + L1PA15 LINE L1 1532 5515 -1282 4428 128 30 3 chr3 10861272 10861998 -207175160 + L1PA15 LINE L1 6064 6809 -7 23 0 0 0 chr3 10862093 10862116 -207175042 + AT_rich Low_complexity Low_complexity 1 23 0 929 199 10 0 chr3 10862218 10862419 -207174739 + L1PB1 LINE L1 2 204 -6659 * 11724 184 88 13 chr3 10862392 10866535 -207170623 + L1PB1 LINE L1 601 5337 -1530 2298 122 0 0 chr3 10866535 10866847 -207170311 + AluSx SINE Alu 1 312 0 11724 184 88 13 chr3 10866847 10868501 -207168657 + L1PB1 LINE L1 5337 6865 -2 186 125 0 0 chr3 10868803 10868814 -207168344 + (TAA)n Simple_repeat Simple_repeat 1 11 -21 2123 78 7 3 chr3 10868814 10869097 -207168061 + AluY SINE Alu 1 284 -27 186 125 0 0 chr3 10869097 10869117 -207168041 + (TAA)n Simple_repeat Simple_repeat 10 32 0 260 310 89 6 chr3 10869156 10869314 -207167844 - MIR SINE MIR -50 212 42 26 64 0 0 chr3 10869314 10869361 -207167797 + AT_rich Low_complexity Low_complexity 1 47 0 239 346 144 19 chr3 10870102 10870206 -207166952 + L2 LINE L2 3175 3291 -22 279 351 0 0 chr3 10871119 10871196 -207165962 - L2 LINE L2 -2 3311 3235 22637 72 15 1 chr3 10871212 10875015 -207162143 - L1PA6 LINE L1 -1 6153 2305 181 57 57 0 chr3 10875015 10875050 -207162108 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 22637 72 15 1 chr3 10875050 10875116 -207162042 - L1PA6 LINE L1 -3849 2305 2241 509 316 60 23 chr3 10875139 10875354 -207161804 + MIR SINE MIR 33 255 -7 1449 312 30 11 chr3 10875532 10876089 -207161069 + L1M1 LINE L1 19 586 -6623 298 155 121 0 chr3 10876092 10876150 -207161008 + Charlie3 DNA MER1_type 6 70 -2640 * 1335 162 57 142 chr3 10876136 10876488 -207160670 + Charlie3 DNA MER1_type 17 2711 0 322 248 77 43 chr3 10876557 10876674 -207160484 + L1M1 LINE L1 677 797 -6412 3074 234 70 2 chr3 10876826 10877654 -207159504 + L1M1 LINE L1 1439 2322 -4887 4922 204 26 11 chr3 10877660 10878902 -207158256 + L1M1 LINE L1 5106 6366 -842 1653 144 81 17 chr3 10878918 10879264 -207157894 + L1M1 LINE L1 6448 6815 -550 1210 56 12 0 chr3 10879289 10879450 -207157708 - L1P3 LINE L1 -459 5713 5551 * 27532 119 16 72 chr3 10879447 10881581 -207155577 - L1P3 LINE L1 -1007 5139 2887 2117 120 0 3 chr3 10881581 10881872 -207155286 + AluY SINE Alu 5 294 -17 27532 119 16 72 chr3 10881872 10885168 -207151990 - L1P3 LINE L1 -3259 2887 12 255 252 52 17 chr3 10885299 10885414 -207151744 + L1MC4 LINE L1 7924 8042 0 375 316 64 23 chr3 10886675 10886893 -207150265 - MIR SINE MIR -34 228 2 180 0 0 0 chr3 10887972 10887992 -207149166 + (A)n Simple_repeat Simple_repeat 1 20 0 336 274 113 8 chr3 10888037 10888161 -207148997 - MIR3 SINE MIR -50 158 22 203 179 0 0 chr3 10888490 10888529 -207148629 + A-rich Low_complexity Low_complexity 4 42 0 460 183 208 0 chr3 10889073 10889193 -207147965 - MIR SINE MIR -90 172 28 369 285 73 36 chr3 10889751 10889916 -207147242 - MIR SINE MIR -71 191 21 2208 204 33 70 chr3 10890239 10890871 -207146287 + LTR9 LTR ERV1 1 609 -3 606 242 35 37 chr3 10891155 10891349 -207145809 + MIR SINE MIR 59 254 -8 1786 254 33 80 chr3 10891708 10892471 -207144687 + MER21B LTR ERV1 13 739 -124 222 372 68 7 chr3 10892859 10893007 -207144151 + MIR3 SINE MIR 25 181 -27 * 331 328 69 17 chr3 10892988 10893162 -207143996 + MER5A DNA MER1_type 7 189 0 3548 141 77 10 chr3 10893305 10894013 -207143145 + LTR1B LTR ERV1 1 785 0 407 262 299 0 chr3 10895067 10895311 -207141847 + MER5C DNA MER1_type 2 318 -6 1434 208 45 20 chr3 10897381 10897780 -207139378 + LTR37B LTR ERV1 60 468 0 218 56 28 0 chr3 10897952 10897988 -207139170 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 230 290 221 0 chr3 10898026 10898157 -207139001 + MIR3 SINE MIR 33 192 -16 21 0 0 0 chr3 10898617 10898638 -207138520 + AT_rich Low_complexity Low_complexity 1 21 0 593 263 41 12 chr3 10899943 10900114 -207137044 - MIR SINE MIR -3 259 84 231 312 0 0 chr3 10900402 10900479 -207136679 - MLT1I LTR MaLR -254 155 79 2284 110 3 3 chr3 10900709 10901010 -207136148 - AluSc SINE Alu -8 301 1 288 188 27 98 chr3 10901201 10901313 -207135845 - Charlie8 DNA MER1_type -2237 180 77 2099 116 0 14 chr3 10901417 10901711 -207135447 - AluSg SINE Alu -20 290 1 228 211 18 18 chr3 10902556 10902613 -207134545 + LTR40b LTR ERVL 329 385 -77 870 244 73 0 chr3 10902640 10902874 -207134284 - MER5C DNA MER1_type -73 251 1 203 250 40 40 chr3 10902933 10903009 -207134149 + MIR SINE MIR 187 262 0 1947 134 42 0 chr3 10904727 10905011 -207132147 + AluSx SINE Alu 3 298 -14 947 209 134 11 chr3 10905983 10906260 -207130898 - MLT1D LTR MaLR -29 476 166 1326 164 108 16 chr3 10906260 10906775 -207130383 + LTR36 LTR ERV1 1 611 0 843 194 6 12 chr3 10906775 10906945 -207130213 - MLT1D LTR MaLR -336 169 1 905 110 0 14 chr3 10906961 10907107 -207130051 + (GAAA)n Simple_repeat Simple_repeat 1 144 0 1411 256 152 16 chr3 10908625 10909133 -207128025 + MLT1G LTR MaLR 14 590 0 206 265 20 0 chr3 10909764 10909813 -207127345 + L2 LINE L2 2708 2757 -557 269 244 277 38 chr3 10909906 10910119 -207127039 - L2 LINE L2 -16 3297 3034 22 0 0 0 chr3 10910199 10910221 -207126937 + AT_rich Low_complexity Low_complexity 1 22 0 382 265 54 0 chr3 10910509 10910656 -207126502 - L1MC5 LINE L1 -546 7415 7261 289 308 5 56 chr3 10910782 10910871 -207126287 - L1MC4 LINE L1 -743 7299 7224 1958 154 3 10 chr3 10910871 10911182 -207125976 - AluSc SINE Alu 0 309 1 289 308 5 56 chr3 10911182 10911287 -207125871 - L1MC4 LINE L1 -818 7224 7115 1616 141 8 0 chr3 10911437 10911678 -207125480 - AluY SINE Alu 0 311 69 522 326 54 15 chr3 10911725 10911753 -207125405 - L1MC4a LINE L1 -911 6897 6872 1132 172 84 116 chr3 10911753 10912218 -207124940 - LTR7 LTR ERV1 0 450 1 522 326 54 15 chr3 10912218 10912521 -207124637 - L1MC4a LINE L1 -936 6872 6633 34407 94 16 14 chr3 10912571 10916274 -207120884 + L1PA6 LINE L1 11 3733 -2421 441 0 0 0 chr3 10916274 10916323 -207120835 + (CA)n Simple_repeat Simple_repeat 2 50 0 34407 94 16 14 chr3 10916323 10918751 -207118407 + L1PA6 LINE L1 3733 6154 0 338 288 86 74 chr3 10918813 10919056 -207118102 - L1MC4a LINE L1 -1283 6525 6280 381 250 62 81 chr3 10919499 10919626 -207117532 - L1ME1 LINE L1 -315 5851 5723 303 71 0 0 chr3 10919626 10919668 -207117490 + (TG)n Simple_repeat Simple_repeat 2 43 0 381 250 62 81 chr3 10919668 10919812 -207117346 - L1ME1 LINE L1 -443 5723 5585 5422 86 33 10 chr3 10919827 10920053 -207117105 + L1PA10 LINE L1 5332 5551 -617 3709 199 24 75 chr3 10920053 10921075 -207116083 + LTR5 LTR ERVK 1 969 0 5422 86 33 10 chr3 10921075 10921666 -207115492 + L1PA10 LINE L1 5551 6168 0 260 250 114 23 chr3 10921684 10921772 -207115386 - L1ME1 LINE L1 -2471 5571 5476 1326 223 59 48 chr3 10921795 10922326 -207114832 - L1ME1 LINE L1 -105 6061 5593 288 314 29 6 chr3 10922325 10922497 -207114661 - L1MEc LINE L1 -5411 985 810 * 547 206 0 87 chr3 10922504 10922569 -207114589 - FLAM_A SINE Alu -187 115 65 1412 229 17 7 chr3 10922569 10922866 -207114292 + AluJb SINE Alu 1 300 -12 547 206 0 87 chr3 10922866 10922926 -207114232 - FLAM_A SINE Alu -237 65 1 598 287 84 28 chr3 10922934 10923584 -207113574 - L1MEc LINE L1 -5634 762 36 900 332 115 37 chr3 10924016 10924823 -207112335 - L2 LINE L2 -477 2837 1968 259 298 96 56 chr3 10925208 10925406 -207111752 - MIR SINE MIR -29 233 28 207 258 25 126 chr3 10925895 10926057 -207111101 - MIR SINE MIR -56 152 5 343 320 33 8 chr3 10926748 10926870 -207110288 + MIR SINE MIR 27 151 -57 924 238 111 23 chr3 10926944 10927414 -207109744 + L1M4 LINE L1 2211 2721 -3425 328 272 121 91 chr3 10927428 10927636 -207109522 + L1M4c LINE L1 1349 1572 -4812 1915 129 44 35 chr3 10927636 10927976 -207109182 + MER61A LTR ERV1 1 343 0 328 272 121 91 chr3 10927976 10928098 -207109060 + L1M4c LINE L1 1572 1689 -4695 348 330 75 5 chr3 10928495 10928695 -207108463 + L1M4c LINE L1 2470 2683 -3699 245 360 7 14 chr3 10929933 10930072 -207107086 - L3 LINE CR1 -191 1386 1249 444 37 0 0 chr3 10930208 10930262 -207106896 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 222 240 70 50 chr3 10930685 10930785 -207106373 + MER5B DNA MER1_type 76 177 -1 301 244 70 23 chr3 10930979 10931065 -207106093 + MER5A DNA MER1_type 14 103 -86 1851 189 83 41 chr3 10931134 10931594 -207105564 - MLT2B3 LTR ERVL -1 553 75 362 104 60 0 chr3 10931691 10931758 -207105400 - MLT2B3 LTR ERVL -483 71 1 283 296 93 9 chr3 10932077 10932185 -207104973 + MIR SINE MIR 94 210 -52 646 329 40 4 chr3 10932649 10932877 -207104281 - MIR SINE MIR -7 255 20 236 360 67 0 chr3 10932897 10932972 -207104186 - L2 LINE L2 -50 3222 3143 239 284 103 17 chr3 10934439 10934555 -207102603 - MER117 DNA MER1_type -54 143 18 539 314 114 36 chr3 10934833 10935035 -207102123 - L2 LINE L2 -503 2811 2626 1210 196 38 92 chr3 10935035 10935427 -207101731 - MLT1A2 LTR MaLR -3 371 1 539 314 114 36 chr3 10935427 10935609 -207101549 - L2 LINE L2 -688 2626 2397 391 283 38 38 chr3 10935739 10935898 -207101260 - MIR SINE MIR 0 262 104 455 304 84 56 chr3 10935939 10936298 -207100860 + MLT1I LTR MaLR 40 408 -1 3348 121 26 31 chr3 10937084 10937670 -207099488 - LTR1 LTR ERV1 0 785 203 1191 138 11 46 chr3 10937664 10937925 -207099233 - LTR1 LTR ERV1 -533 252 1 * 305 308 15 23 chr3 10938113 10938243 -207098915 - MLT1K LTR MaLR -18 570 442 216 0 0 0 chr3 10938387 10938411 -207098747 + (A)n Simple_repeat Simple_repeat 1 24 0 492 317 114 51 chr3 10938854 10939452 -207097706 - L2 LINE L2 -15 3257 2629 237 65 0 0 chr3 10939735 10939766 -207097392 + (T)n Simple_repeat Simple_repeat 1 31 0 342 327 154 3 chr3 10941628 10941855 -207095303 - MIR SINE MIR -1 261 8 279 0 0 0 chr3 10942875 10942906 -207094252 + (CA)n Simple_repeat Simple_repeat 2 32 0 221 57 29 0 chr3 10942906 10942941 -207094217 + (GA)n Simple_repeat Simple_repeat 1 36 0 506 208 28 56 chr3 10943058 10943202 -207093956 + MLT1J LTR MaLR 3 142 -369 867 252 100 29 chr3 10943316 10943657 -207093501 + LTR16C LTR ERVL 127 491 0 580 294 65 26 chr3 10943828 10944059 -207093099 + MIR SINE MIR 17 256 -6 225 257 40 14 chr3 10944582 10944656 -207092502 + L2 LINE L2 2686 2761 -553 241 390 48 7 chr3 10944778 10944924 -207092234 + L2 LINE L2 2922 3073 -199 529 274 37 0 chr3 10945342 10945506 -207091652 + MIR SINE MIR 93 262 0 302 391 36 0 chr3 10945716 10945826 -207091332 + L2 LINE L2 3147 3260 -12 296 146 0 36 chr3 10946133 10946188 -207090970 + L2 LINE L2 3257 3309 -4 1796 172 3 25 chr3 10946343 10946694 -207090464 - AluJo SINE Alu 0 344 1 183 328 246 0 chr3 10947338 10947460 -207089698 + MIR SINE MIR 40 191 -71 226 314 64 64 chr3 10947707 10947863 -207089295 - MIR SINE MIR -87 175 20 297 253 0 38 chr3 10947934 10948013 -207089145 - MIR SINE MIR -61 201 126 339 259 44 15 chr3 10948095 10948230 -207088928 - MLT1K LTR MaLR -76 512 374 235 262 0 16 chr3 10950254 10950315 -207086843 + MLT1K LTR MaLR 187 246 -342 369 324 3 40 chr3 10952020 10952338 -207084820 + GA-rich Low_complexity Low_complexity 1 306 0 805 264 116 60 chr3 10953094 10953228 -207083930 + LTR16A1 LTR ERVL 3 128 -329 1976 147 3 26 chr3 10953228 10953534 -207083624 + AluSx SINE Alu 3 301 -11 805 264 116 60 chr3 10953534 10953830 -207083328 + LTR16A1 LTR ERVL 128 457 0 3854 167 34 47 chr3 10954727 10955522 -207081636 + LTR1 LTR ERV1 1 785 0 198 258 8 142 chr3 10955536 10955656 -207081502 + L2 LINE L2 3168 3271 -1 464 179 42 32 chr3 10956009 10956104 -207081054 + MER5A DNA MER1_type 4 99 -90 414 306 127 44 chr3 10956220 10956460 -207080698 + LTR16C LTR ERVL 72 357 -134 2849 228 80 18 chr3 10956460 10957238 -207079920 - LTR1B LTR ERV1 0 826 1 414 306 127 44 chr3 10957238 10957383 -207079775 + LTR16C LTR ERVL 357 489 -2 370 310 62 0 chr3 10957482 10957627 -207079531 + MER63A DNA MER1_type 57 210 0 987 307 63 65 chr3 10957783 10958161 -207078997 - L2 LINE L2 0 3272 2895 2150 137 0 3 chr3 10958161 10958474 -207078684 + AluSq SINE Alu 1 312 -1 987 307 63 65 chr3 10958474 10958919 -207078239 - L2 LINE L2 -377 2895 2432 207 0 0 0 chr3 10958944 10958967 -207078191 + (T)n Simple_repeat Simple_repeat 1 23 0 982 148 0 67 chr3 10959289 10959499 -207077659 + MER44D DNA MER2_type 29 494 -115 5998 98 9 7 chr3 10959503 10960396 -207076762 - L1PA10 LINE L1 -12 6156 5262 353 328 19 58 chr3 10960945 10961134 -207076024 - MIR3 SINE MIR -36 172 27 239 257 216 16 chr3 10961590 10961738 -207075420 + MIR SINE MIR 13 184 -55 380 358 57 0 chr3 10961752 10961875 -207075283 - L2 LINE L2 -6 3266 3137 2214 104 10 3 chr3 10961941 10962238 -207074920 + AluSx SINE Alu 1 299 -13 336 318 36 26 chr3 10963370 10963562 -207073596 + MLT1K LTR MaLR 395 588 0 1806 142 48 43 chr3 10963565 10963938 -207073220 + THE1C LTR MaLR 1 375 0 420 185 11 0 chr3 10964036 10964128 -207073030 - MER58B DNA MER1_type -9 332 240 2545 164 31 7 chr3 10965809 10966259 -207070899 - LOR1b LTR ERV1 0 461 1 227 266 0 0 chr3 10966778 10966842 -207070316 - MER117 DNA MER1_type -133 64 1 232 407 0 0 chr3 10967055 10967141 -207070017 + L2 LINE L2 2939 3024 -248 197 279 115 0 chr3 10967825 10967886 -207069272 + MIR SINE MIR 81 148 -114 514 266 41 35 chr3 10968015 10968184 -207068974 - MIR SINE MIR -58 204 35 617 267 46 63 chr3 10968392 10968677 -207068481 + MLT1J LTR MaLR 232 511 0 203 313 12 12 chr3 10969107 10969190 -207067968 - MIR SINE MIR -16 246 164 314 308 163 0 chr3 10969811 10969983 -207067175 + LTR33 LTR ERVL 1 200 -321 282 324 21 7 chr3 10970121 10970263 -207066895 + LTR33 LTR ERVL 374 517 -4 230 266 16 0 chr3 10970861 10970925 -207066233 + (TTCA)n Simple_repeat Simple_repeat 1 65 0 1007 149 0 6 chr3 10971094 10971275 -207065883 + L1 LINE L1 3389 3568 -2578 13389 144 36 20 chr3 10972400 10974780 -207062378 + Tigger1 DNA MER2_type 1 2418 0 2302 116 0 0 chr3 10974824 10975126 -207062032 - AluSx SINE Alu -10 302 1 191 122 0 24 chr3 10975312 10975353 -207061805 + (TA)n Simple_repeat Simple_repeat 2 41 0 775 245 66 9 chr3 10975852 10976064 -207061094 - MER58A DNA MER1_type 0 224 1 2371 188 47 2 chr3 10976260 10976707 -207060451 + LTR24 LTR ERV1 1 467 0 497 222 22 89 chr3 10976771 10976951 -207060207 + MIR3 SINE MIR 20 187 -21 201 348 111 39 chr3 10977277 10977484 -207059674 + L3 LINE CR1 1356 1577 0 312 177 0 152 chr3 10977640 10977719 -207059439 + L2 LINE L2 3246 3312 -1 266 307 94 19 chr3 10979401 10979613 -207057545 + L2 LINE L2 2749 2976 -338 327 188 38 38 chr3 10979768 10979928 -207057230 + (TTGTG)n Simple_repeat Simple_repeat 1 160 0 191 122 0 24 chr3 10980433 10980474 -207056684 + (TA)n Simple_repeat Simple_repeat 2 41 0 775 245 66 9 chr3 10980980 10981192 -207055966 - MER58A DNA MER1_type 0 224 1 1327 196 62 9 chr3 10981388 10981709 -207055449 + LTR24 LTR ERV1 1 338 -129 6029 38 0 1 chr3 10982078 10982847 -207054311 - L1P LINE L1 -1931 4215 3448 8990 39 1 1 chr3 10982849 10984044 -207053114 + L1P LINE L1 2251 3445 -2701 * 9612 63 10 2 chr3 10984038 10985388 -207051770 + L1P LINE L1 3996 5356 -790 1156 74 27 3 chr3 10985383 10985569 -207051589 - L1P2 LINE L1 -623 5531 5343 * 2222 184 45 45 chr3 10986489 10986999 -207050159 + MER67D LTR ERV1 1 510 -4 952 219 40 48 chr3 10987077 10987328 -207049830 + L2 LINE L2 2446 2694 -620 703 249 16 21 chr3 10987415 10987604 -207049554 + MER5A DNA MER1_type 1 188 -1 579 301 87 51 chr3 10987618 10987953 -207049205 + L2 LINE L2 2953 3299 -14 433 253 60 86 chr3 10987990 10988247 -207048911 - MER113 DNA MER1_type? -182 339 92 2146 108 0 14 chr3 10988247 10988534 -207048624 + AluSg SINE Alu 1 283 -27 433 253 60 86 chr3 10988534 10988624 -207048534 - MER113 DNA MER1_type? -429 92 1 584 341 85 23 chr3 10989483 10989920 -207047238 + LTR16C LTR ERVL 2 465 -26 887 136 31 0 chr3 10991011 10991173 -207045985 - L1MC1 LINE L1 -223 6110 5944 290 322 35 9 chr3 10991174 10991289 -207045869 - MIR SINE MIR -98 164 47 212 271 0 0 chr3 10991554 10991613 -207045545 - L2 LINE L2 0 3272 3214 418 260 43 117 chr3 10992302 10992410 -207044748 - MIR SINE MIR -12 250 166 1583 206 39 0 chr3 10992410 10992692 -207044466 + AluJb SINE Alu 1 293 -19 418 260 43 117 chr3 10992692 10992814 -207044344 - MIR SINE MIR -96 166 37 504 298 36 58 chr3 10992879 10993104 -207044054 + L2 LINE L2 3053 3272 0 721 214 71 0 chr3 10993204 10993358 -207043800 + MER63B DNA MER1_type 1 165 -271 197 306 153 0 chr3 10993412 10993510 -207043648 + MIR3 SINE MIR 91 203 -5 198 404 28 0 chr3 10994444 10994553 -207042605 - L2 LINE L2 -7 3265 3154 763 254 105 13 chr3 10994650 10994878 -207042280 + MIR SINE MIR 14 262 0 1703 141 45 14 chr3 10995966 10996256 -207040902 + AluSq SINE Alu 1 299 -14 1922 100 4 0 chr3 10996878 10997127 -207040031 - AluSp SINE Alu -17 296 47 2108 142 9 0 chr3 10997942 10998287 -207038871 - L1PB1 LINE L1 -8 6143 5796 342 131 0 0 chr3 10998297 10998411 -207038747 + (TA)n Simple_repeat Simple_repeat 1 114 0 343 298 9 18 chr3 10998412 10998526 -207038632 + L1MC4 LINE L1 6616 6728 -1314 12698 199 59 11 chr3 10998532 11004577 -207032581 - L1P5 LINE L1 -361 6506 16 643 304 143 36 chr3 11004825 11005352 -207031806 + L2 LINE L2 2723 3312 -1 298 328 23 46 chr3 11005366 11005540 -207031618 - MIR SINE MIR 0 262 93 2199 157 67 10 chr3 11005626 11006027 -207031131 + MSTB LTR MaLR 1 424 -2 181 339 53 53 chr3 11007195 11007366 -207029792 - L2 LINE L2 0 3272 3102 182 350 82 25 chr3 11007863 11008217 -207028941 - L2 LINE L2 -897 2417 2044 440 293 127 29 chr3 11008753 11008958 -207028200 - L2 LINE L2 0 3313 3089 1635 192 3 23 chr3 11009503 11009805 -207027353 - AluJo SINE Alu -16 296 1 12918 148 25 42 chr3 11010392 11010736 -207026422 + Tigger1 DNA MER2_type 1 349 -2069 180 0 0 0 chr3 11010736 11010756 -207026402 + (TC)n Simple_repeat Simple_repeat 1 20 0 12918 148 25 42 chr3 11010756 11011434 -207025724 + Tigger1 DNA MER2_type 349 1037 -1381 2233 114 3 0 chr3 11011434 11011742 -207025416 + AluSq SINE Alu 1 309 -4 12918 148 25 42 chr3 11011742 11012187 -207024971 + Tigger1 DNA MER2_type 1037 1488 -930 2566 33 0 3 chr3 11012187 11012488 -207024670 - AluY SINE Alu -11 300 1 12918 148 25 42 chr3 11012488 11013477 -207023681 + Tigger1 DNA MER2_type 1488 2418 0 509 214 209 8 chr3 11013491 11013725 -207023433 + MER113 DNA MER1_type? 121 401 -120 904 312 74 17 chr3 11013771 11014178 -207022980 + LTR16A LTR ERVL 16 445 -5 1590 119 0 21 chr3 11014187 11014423 -207022735 - AluSg/x SINE Alu -3 309 79 1030 39 0 0 chr3 11014505 11014634 -207022524 + L1PA5 LINE L1 6026 6154 0 1091 181 50 23 chr3 11014862 11015166 -207021992 - MER33 DNA MER1_type -22 302 1 591 317 116 0 chr3 11015767 11015991 -207021167 - MIR SINE MIR -3 259 10 216 194 0 0 chr3 11016159 11016195 -207020963 - MIR SINE MIR -59 149 114 273 185 0 0 chr3 11017100 11017154 -207020004 + MER116 DNA Mariner 7 60 -20 195 100 0 0 chr3 11017387 11017417 -207019741 + (TTA)n Simple_repeat Simple_repeat 1 30 0 5098 251 54 25 chr3 11017808 11018571 -207018587 + L1MB7 LINE L1 19 758 -5886 342 0 0 0 chr3 11018571 11018609 -207018549 + (CA)n Simple_repeat Simple_repeat 1 38 0 5098 251 54 25 chr3 11018609 11019630 -207017528 + L1MB7 LINE L1 758 1748 -4896 2176 92 0 44 chr3 11019630 11019945 -207017213 - AluY SINE Alu -10 301 1 5098 251 54 25 chr3 11019945 11021593 -207015565 + L1MB7 LINE L1 1748 3655 -2989 1457 130 31 0 chr3 11021640 11021863 -207015295 - MER30 DNA MER1_type 0 230 1 3415 219 29 16 chr3 11021956 11022739 -207014419 + L1MB7 LINE L1 5089 5893 -789 366 79 40 0 chr3 11022739 11022815 -207014343 + (TA)n Simple_repeat Simple_repeat 2 80 0 3415 219 29 16 chr3 11022815 11023519 -207013639 + L1MB7 LINE L1 5893 6587 -95 1836 182 18 12 chr3 11023520 11023861 -207013297 + MER61A LTR ERV1 1 343 0 2187 158 53 11 chr3 11024185 11024669 -207012489 + MER61A-int LTR ERV1 240 777 -4440 268 93 0 0 chr3 11024662 11024705 -207012453 + MER61A-int LTR ERV1 1320 1362 -3855 * 18976 120 31 19 chr3 11024707 11027016 -207010142 + MER61A-int LTR ERV1 2226 3510 -1707 2407 83 3 3 chr3 11027016 11027317 -207009841 + AluY SINE Alu 1 301 -10 18976 120 31 19 chr3 11027317 11029047 -207008111 + MER61A-int LTR ERV1 3510 5217 0 2112 155 9 6 chr3 11029047 11029389 -207007769 + MER61A LTR ERV1 1 343 0 387 125 56 0 chr3 11029395 11029467 -207007691 + L1MB7 LINE L1 6591 6666 -16 294 179 0 0 chr3 11029532 11029588 -207007570 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 198 143 0 0 chr3 11029588 11029623 -207007535 + (CA)n Simple_repeat Simple_repeat 2 36 0 2720 202 59 12 chr3 11029992 11030586 -207006572 - LTR26E LTR ERV1 0 622 1 299 275 75 0 chr3 11030588 11030668 -207006490 - MIR SINE MIR -87 175 90 580 235 66 0 chr3 11030687 11030853 -207006305 + MLT1E LTR MaLR 1 177 -416 2771 173 92 25 chr3 11030861 11031472 -207005686 + LTR51 LTR ERV1 1 657 -14 5787 66 31 28 chr3 11031472 11032250 -207004908 + LTR17 LTR ERV1 1 780 0 2771 173 92 25 chr3 11032250 11032267 -207004891 + LTR51 LTR ERV1 657 671 0 1056 196 51 126 chr3 11032317 11032478 -207004680 + MLT1E LTR MaLR 210 329 -264 2718 180 73 49 chr3 11032478 11033188 -207003970 - LTR8A LTR ERV1 0 727 1 1056 196 51 126 chr3 11033188 11033398 -207003760 + MLT1E LTR MaLR 329 553 -40 2350 138 35 45 chr3 11033407 11034006 -207003152 + MER4B LTR ERV1 4 766 0 340 222 56 116 chr3 11034081 11034260 -207002898 - MER3 DNA MER1_type 0 209 44 2908 196 53 6 chr3 11034260 11034449 -207002709 + MER82 DNA MER2_type 1 180 -473 819 80 0 0 chr3 11034449 11034561 -207002597 + (TA)n Simple_repeat Simple_repeat 1 112 0 2908 196 53 6 chr3 11034561 11034992 -207002166 + MER82 DNA MER2_type 180 650 -3 340 222 56 116 chr3 11034992 11035028 -207002130 - MER3 DNA MER1_type -165 44 7 399 331 47 12 chr3 11035471 11035643 -207001515 - MER5A DNA MER1_type -5 184 7 222 118 0 0 chr3 11036592 11036626 -207000532 + (T)n Simple_repeat Simple_repeat 1 34 0 378 0 0 0 chr3 11037011 11037053 -207000105 + (TG)n Simple_repeat Simple_repeat 2 43 0 298 355 48 28 chr3 11037254 11037502 -206999656 + L2 LINE L2 2827 3079 -193 507 306 56 26 chr3 11037588 11037820 -206999338 + L2 LINE L2 3075 3313 0 190 301 49 49 chr3 11037821 11037944 -206999214 + MIR SINE MIR 140 262 0 2399 103 0 0 chr3 11039242 11039552 -206997606 + AluSq SINE Alu 1 310 -3 439 294 62 6 chr3 11039811 11039971 -206997187 - Charlie8 DNA MER1_type -2152 265 97 533 266 84 35 chr3 11040459 11040717 -206996441 - HAL1 LINE L1 -1133 1374 1089 2234 97 3 3 chr3 11040717 11041015 -206996143 - AluSx SINE Alu -14 298 1 533 266 84 35 chr3 11041015 11041150 -206996008 - HAL1 LINE L1 -1418 1089 962 2350 78 0 7 chr3 11041197 11041503 -206995655 - AluY SINE Alu -7 304 1 2511 260 39 25 chr3 11041507 11043151 -206994007 + L1MEc LINE L1 1599 3226 -2989 1457 130 31 0 chr3 11043198 11043421 -206993737 - MER30 DNA MER1_type 0 230 1 3415 219 29 17 chr3 11043514 11044298 -206992860 + L1MB7 LINE L1 4591 5395 -789 366 79 40 0 chr3 11044298 11044374 -206992784 + (TA)n Simple_repeat Simple_repeat 1 79 0 3415 219 29 17 chr3 11044374 11045078 -206992080 + L1MB7 LINE L1 5395 6089 -95 1836 182 18 12 chr3 11045079 11045420 -206991738 + MER61A LTR ERV1 1 343 0 2067 165 53 13 chr3 11045747 11046229 -206990929 + MER61A-int LTR ERV1 243 777 -4440 * 3903 103 12 5 chr3 11046222 11046882 -206990276 + MER61A-int LTR ERV1 1320 2030 -3187 439 294 62 6 chr3 11047454 11047614 -206989544 - Charlie8 DNA MER1_type -2152 265 97 677 269 76 65 chr3 11048102 11048360 -206988798 - HAL1 LINE L1 -1133 1374 1120 2234 97 3 3 chr3 11048360 11048658 -206988500 - AluSx SINE Alu -14 298 1 677 269 76 65 chr3 11048658 11048840 -206988318 - HAL1 LINE L1 -1387 1120 941 2421 65 0 7 chr3 11048840 11049146 -206988012 - AluY SINE Alu -7 304 1 677 269 76 65 chr3 11049146 11049339 -206987819 - HAL1 LINE L1 -1566 941 733 2069 148 0 0 chr3 11049491 11049801 -206987357 + AluSx SINE Alu 1 310 -2 353 194 21 11 chr3 11049945 11050038 -206987120 - MER53 DNA DNA -8 181 88 266 111 74 0 chr3 11050023 11050077 -206987081 + MER53 DNA DNA 126 183 -6 * 265 301 43 80 chr3 11050089 11050337 -206986821 - HAL1 LINE L1 -2075 432 205 635 224 6 33 chr3 11050337 11050520 -206986638 - MER104 DNA MER2_type -1 179 2 265 301 43 80 chr3 11050520 11050709 -206986449 - HAL1 LINE L1 -2302 205 11 1073 259 52 32 chr3 11051232 11051758 -206985400 - L2 LINE L2 -34 3279 2749 312 177 0 152 chr3 11053437 11053516 -206983642 - L2 LINE L2 -1 3312 3246 201 348 111 39 chr3 11053672 11053879 -206983279 - L3 LINE CR1 0 1577 1356 497 222 22 89 chr3 11054205 11054385 -206982773 - MIR3 SINE MIR -21 187 20 2344 190 47 2 chr3 11054449 11054896 -206982262 - LTR24 LTR ERV1 0 467 1 775 245 66 9 chr3 11055092 11055304 -206981854 + MER58A DNA MER1_type 1 224 0 191 122 0 24 chr3 11055803 11055844 -206981314 + (TA)n Simple_repeat Simple_repeat 2 41 0 2107 136 0 0 chr3 11056030 11056332 -206980826 + AluSx SINE Alu 1 302 -10 5101 233 88 33 chr3 11056367 11057353 -206979805 - L1M4c LINE L1 -4794 1852 738 342 0 0 0 chr3 11057353 11057391 -206979767 + (TG)n Simple_repeat Simple_repeat 1 38 0 5101 233 88 33 chr3 11057391 11058154 -206979004 - L1M4c LINE L1 -5908 738 19 195 100 0 0 chr3 11058546 11058576 -206978582 + (TAA)n Simple_repeat Simple_repeat 1 30 0 273 185 0 0 chr3 11058810 11058864 -206978294 - MER116 DNA Mariner -20 60 7 216 194 0 0 chr3 11059770 11059806 -206977352 + MIR SINE MIR 114 149 -59 591 317 116 0 chr3 11059974 11060198 -206976960 + MIR SINE MIR 10 259 -3 1091 181 50 23 chr3 11060799 11061103 -206976055 + MER33 DNA MER1_type 1 302 -22 1030 39 0 0 chr3 11061331 11061460 -206975698 - L1PA5 LINE L1 0 6154 6026 1590 119 0 21 chr3 11061542 11061778 -206975380 + AluSg/x SINE Alu 79 309 -3 878 314 74 17 chr3 11061787 11062194 -206974964 - LTR16A LTR ERVL -5 445 16 507 224 71 11 chr3 11062291 11062474 -206974684 - MER113 DNA MER1_type? -207 314 121 746 168 37 6 chr3 11062488 11062649 -206974509 - Tigger1 DNA MER2_type 0 2418 2253 226 278 56 8 chr3 11062974 11063100 -206974058 + L1MD3 LINE L1 7807 7938 -57 315 322 0 0 chr3 11063352 11063442 -206973716 - L1MC4 LINE L1 -1339 6703 6614 414 314 74 26 chr3 11063494 11063723 -206973435 - MIR SINE MIR -11 251 12 1609 228 89 9 chr3 11063786 11064234 -206972924 - MLT1E3 LTR MaLR -2 622 139 271 83 0 0 chr3 11064296 11064332 -206972826 - MLT1E3 LTR MaLR -584 40 5 2289 107 13 0 chr3 11064383 11064682 -206972476 + AluSx SINE Alu 1 303 -9 5721 55 16 0 chr3 11064958 11065729 -206971429 - L1P LINE L1 -1368 4778 3996 * 8954 42 0 2 chr3 11065723 11066920 -206970238 - L1PA4 LINE L1 -2701 3445 2251 16106 33 1 0 chr3 11066922 11069630 -206967528 + L1PA4 LINE L1 3448 6155 0 27393 89 9 3 chr3 11069642 11073627 -206963531 - L1P LINE L1 -2135 4011 4 219 114 0 0 chr3 11073878 11073913 -206963245 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 649 330 44 0 chr3 11074136 11074363 -206962795 + MIR SINE MIR 2 238 -24 388 257 31 29 chr3 11075648 11075779 -206961379 + MIR SINE MIR 36 168 -40 854 256 91 20 chr3 11076062 11076457 -206960701 + LTR37A LTR ERV1 4 426 0 640 250 105 15 chr3 11076719 11076919 -206960239 + MLT1J LTR MaLR 294 511 0 208 277 26 142 chr3 11078186 11078341 -206958817 - MER5A DNA MER1_type -49 140 4 298 210 0 0 chr3 11078445 11078507 -206958651 - MSTD LTR MaLR 0 396 335 238 179 18 18 chr3 11078523 11078579 -206958579 + (TA)n Simple_repeat Simple_repeat 2 57 0 309 202 119 0 chr3 11078579 11078663 -206958495 - L1MC4 LINE L1 -1337 6705 6612 318 255 0 43 chr3 11078678 11078772 -206958386 + L1MC4 LINE L1 6616 6705 -1337 366 147 52 15 chr3 11078800 11078936 -206958222 + (TA)n Simple_repeat Simple_repeat 1 141 0 336 244 35 12 chr3 11079089 11079175 -206957983 - L1MC4 LINE L1 -1340 6702 6615 511 121 50 18 chr3 11079180 11079466 -206957692 + (TA)n Simple_repeat Simple_repeat 1 295 0 415 178 43 21 chr3 11079487 11079813 -206957345 + (TA)n Simple_repeat Simple_repeat 1 333 0 2251 87 3 3 chr3 11079826 11080114 -206957044 - AluSp SINE Alu -25 288 1 28 0 0 0 chr3 11080121 11080149 -206957009 + AT_rich Low_complexity Low_complexity 1 28 0 1409 240 47 36 chr3 11080179 11080566 -206956592 - MLT2B3 LTR ERVL -39 515 125 2102 181 46 46 chr3 11080667 11081163 -206955995 - MER67D LTR ERV1 -18 496 1 1156 74 27 3 chr3 11082106 11082292 -206954866 + L1P2 LINE L1 5343 5531 -623 * 14348 49 4 1 chr3 11082287 11084190 -206952968 - L1P LINE L1 -790 5356 3448 7962 37 0 1 chr3 11084192 11085238 -206951920 + L1P LINE L1 2251 3295 -2851 387 259 26 43 chr3 11085395 11085511 -206951647 + L2 LINE L2 3200 3313 0 1219 188 135 9 chr3 11087185 11087504 -206949654 + MLT2D LTR ERVL 8 366 -48 2093 120 0 32 chr3 11087651 11087959 -206949199 + AluSx SINE Alu 9 306 -6 206 313 36 24 chr3 11088655 11088738 -206948420 - L2 LINE L2 0 3272 3189 4165 175 54 27 chr3 11089655 11090550 -206946608 - MER21A LTR ERV1 0 931 13 217 125 62 23 chr3 11090556 11090684 -206946474 + (TA)n Simple_repeat Simple_repeat 2 134 0 738 184 46 0 chr3 11091351 11091525 -206945633 + L1MD3 LINE L1 7804 7985 -10 2412 128 18 3 chr3 11091765 11092147 -206945011 - Tigger2 DNA MER2_type 0 2718 2331 608 213 0 0 chr3 11092147 11092255 -206944903 - AluSc SINE Alu -70 239 132 1267 132 5 5 chr3 11092255 11092467 -206944691 - Tigger2 DNA MER2_type -227 2491 2280 321 211 0 28 chr3 11092465 11092536 -206944622 - Tigger2 DNA MER2_type -2649 69 1 * 24 0 0 0 chr3 11092670 11092694 -206944464 + AT_rich Low_complexity Low_complexity 1 24 0 211 333 103 0 chr3 11093624 11093741 -206943417 + L2 LINE L2 3182 3310 -3 472 234 19 91 chr3 11095201 11095355 -206941803 - L2 LINE L2 -2 3311 3169 265 228 41 76 chr3 11095440 11095585 -206941573 + MLT1K LTR MaLR 429 568 -20 247 273 65 0 chr3 11096199 11096276 -206940882 - MIR SINE MIR -3 259 178 473 324 112 27 chr3 11096285 11096615 -206940543 - MLT1J2 LTR MaLR -21 429 72 247 253 6 118 chr3 11098174 11098344 -206938814 - LTR16A LTR ERVL -188 262 112 435 342 87 27 chr3 11098477 11098810 -206938348 + LTR16C LTR ERVL 130 482 -9 1462 157 141 0 chr3 11098845 11099093 -206938065 - AluSg SINE Alu -27 283 1 188 316 0 18 chr3 11099095 11099152 -206938006 + MIR SINE MIR 90 145 -63 180 161 0 0 chr3 11099197 11099228 -206937930 + L2 LINE L2 3263 3293 -20 269 247 41 10 chr3 11099896 11099988 -206937170 + MER117 DNA MER1_type 36 130 -67 1560 117 163 85 chr3 11099988 11100363 -206936795 - MER4A LTR ERV1 0 664 261 705 71 0 10 chr3 11100363 11100462 -206936696 - MER4A LTR ERV1 -566 98 1 349 190 51 15 chr3 11100597 11100734 -206936424 + (TA)n Simple_repeat Simple_repeat 1 142 0 438 338 6 12 chr3 11100846 11101006 -206936152 + MIR SINE MIR 72 230 -32 23 0 0 0 chr3 11101156 11101179 -206935979 + AT_rich Low_complexity Low_complexity 1 23 0 230 257 36 0 chr3 11101388 11101528 -206935630 + (TA)n Simple_repeat Simple_repeat 2 146 0 326 306 6 45 chr3 11101612 11101769 -206935389 + MIR SINE MIR 20 170 -92 334 272 192 8 chr3 11102183 11102308 -206934850 + MIR SINE MIR 40 187 -75 27 0 0 0 chr3 11102814 11102841 -206934317 + AT_rich Low_complexity Low_complexity 1 27 0 847 93 0 0 chr3 11102844 11102952 -206934206 - FRAM SINE Alu -30 146 39 30 0 0 0 chr3 11102980 11103010 -206934148 + AT_rich Low_complexity Low_complexity 1 30 0 393 211 88 26 chr3 11103033 11103147 -206934011 - L1ME1 LINE L1 -50 6116 5996 503 268 100 67 chr3 11104724 11104963 -206932195 + MIR SINE MIR 3 249 -13 408 272 105 37 chr3 11105089 11105280 -206931878 + MLT1I LTR MaLR 1 204 -205 519 216 16 24 chr3 11105306 11105455 -206931703 + MLT1I LTR MaLR 280 409 0 460 218 171 18 chr3 11105721 11105891 -206931267 - MER3 DNA MER1_type -7 202 7 197 252 178 28 chr3 11107035 11107142 -206930016 + MIR3 SINE MIR 85 207 -1 2367 97 10 0 chr3 11107142 11107451 -206929707 - AluSx SINE Alu 0 312 1 1264 247 82 5 chr3 11107527 11107932 -206929226 - L1ME1 LINE L1 -7 6159 5724 573 246 94 6 chr3 11108279 11108450 -206928708 + MER5A DNA MER1_type 2 187 -2 313 250 0 34 chr3 11108535 11108623 -206928535 - MLT2E LTR ERVL -512 116 32 25 0 0 0 chr3 11109462 11109487 -206927671 + AT_rich Low_complexity Low_complexity 1 25 0 246 278 247 0 chr3 11109739 11109836 -206927322 + L2 LINE L2 2201 2321 -993 302 311 9 9 chr3 11110385 11110491 -206926667 - MIR SINE MIR -46 216 111 302 242 48 0 chr3 11110756 11110818 -206926340 + L2 LINE L2 3207 3271 -1 1963 158 0 16 chr3 11111398 11111714 -206925444 - AluSx SINE Alu -1 311 1 581 49 12 0 chr3 11111781 11111862 -206925296 + (TCTA)n Simple_repeat Simple_repeat 3 84 0 302 250 150 25 chr3 11111868 11112068 -206925090 + L1MC4a LINE L1 5708 5932 -1876 240 227 0 0 chr3 11112079 11112123 -206925035 - L2 LINE L2 -8 3264 3221 204 286 78 0 chr3 11112371 11112448 -206924710 + L2 LINE L2 1581 1663 -1651 214 388 54 0 chr3 11112622 11112769 -206924389 + L2 LINE L2 2308 2462 -852 221 355 0 13 chr3 11112780 11112856 -206924302 + L2 LINE L2 3184 3258 -14 731 272 67 70 chr3 11112891 11113307 -206923851 + MLT1J2 LTR MaLR 22 436 -14 1644 191 34 8 chr3 11114915 11115437 -206921721 + L1MB5 LINE L1 4902 5431 -743 3041 233 109 23 chr3 11115443 11116054 -206921104 + L1M4c LINE L1 1237 1794 -4588 2093 143 187 9 chr3 11116054 11116493 -206920665 - LTR44 LTR ERV1 -2 517 1 3041 233 109 23 chr3 11116493 11117073 -206920085 + L1M4c LINE L1 1794 2532 -3850 1653 191 30 1 chr3 11117088 11117468 -206919690 + L1MB5 LINE L1 5787 6178 -2 408 230 9 0 chr3 11117500 11117613 -206919545 + L1ME LINE L1 698 811 -5259 297 0 0 0 chr3 11117653 11117686 -206919472 + (CA)n Simple_repeat Simple_repeat 2 34 0 2564 64 0 0 chr3 11118367 11118678 -206918480 + AluY SINE Alu 1 311 0 403 244 117 84 chr3 11119494 11119768 -206917390 + MLT1I LTR MaLR 74 356 -53 230 93 0 23 chr3 11119974 11120017 -206917141 + (TCC)n Simple_repeat Simple_repeat 1 42 0 937 247 14 0 chr3 11120669 11120888 -206916270 - MER58A DNA MER1_type -2 222 1 382 254 111 8 chr3 11120922 11120976 -206916182 - MER5A DNA MER1_type -30 159 112 2224 117 0 0 chr3 11120976 11121275 -206915883 + AluSq SINE Alu 1 299 -14 382 254 111 8 chr3 11121275 11121346 -206915812 - MER5A DNA MER1_type -77 112 21 2042 165 63 18 chr3 11121537 11121936 -206915222 - MSTB LTR MaLR 0 426 10 320 271 54 39 chr3 11122089 11122218 -206914940 + L2 LINE L2 3183 3313 0 244 221 103 73 chr3 11122427 11122563 -206914595 + MER3 DNA MER1_type 7 146 -63 1847 243 60 33 chr3 11122580 11123184 -206913974 - L1M4 LINE L1 -5921 621 2 182 333 78 33 chr3 11123193 11123283 -206913875 + L2 LINE L2 3002 3095 -177 336 307 88 9 chr3 11123376 11123490 -206913668 + L2 LINE L2 3137 3259 -13 1879 134 10 14 chr3 11123834 11124125 -206913033 - AluSx SINE Alu -2 310 21 268 312 52 75 chr3 11124276 11124449 -206912709 + MIR3 SINE MIR 7 175 -33 192 309 59 0 chr3 11124589 11124657 -206912501 - L2 LINE L2 -5 3267 3196 1811 165 54 14 chr3 11124941 11125292 -206911866 - MLT1A1 LTR MaLR 0 365 1 298 331 29 44 chr3 11125308 11125430 -206911728 + MIR SINE MIR 113 234 -28 1728 171 86 9 chr3 11125430 11125769 -206911389 - MLT1A1 LTR MaLR 0 365 1 298 331 29 44 chr3 11125769 11125782 -206911376 + MIR SINE MIR 234 246 -16 904 204 18 44 chr3 11125792 11126017 -206911141 + MER20 DNA MER1_type 1 219 0 201 167 0 42 chr3 11126176 11126194 -206910964 + CT-rich Low_complexity Low_complexity 2 19 -51 1762 153 52 30 chr3 11126194 11126561 -206910597 + THE1C LTR MaLR 1 375 0 201 167 0 42 chr3 11126561 11126614 -206910544 + CT-rich Low_complexity Low_complexity 19 70 0 261 365 24 42 chr3 11127239 11127349 -206909809 - L2 LINE L2 -177 3095 2987 1681 232 20 22 chr3 11127349 11127857 -206909301 + Charlie4a DNA MER1_type 2 508 0 261 365 24 42 chr3 11127857 11127913 -206909245 - L2 LINE L2 -285 2987 2932 510 274 174 19 chr3 11127958 11128170 -206908988 - MIR SINE MIR -7 255 11 493 347 87 4 chr3 11128216 11128458 -206908700 - MIR SINE MIR 0 262 1 451 370 8 33 chr3 11128505 11128748 -206908410 - L2 LINE L2 -488 2826 2590 216 307 50 84 chr3 11129192 11129371 -206907787 + L3b LINE CR1 1405 1577 -6 273 182 61 0 chr3 11130296 11130362 -206906796 + L1MA3 LINE L1 6236 6305 0 748 318 39 26 chr3 11130505 11130892 -206906266 - MLT1K LTR MaLR -136 452 61 211 361 41 0 chr3 11130950 11131047 -206906111 - L3b LINE CR1 -182 1401 1301 291 45 23 0 chr3 11132408 11132452 -206904706 - MADE1 DNA Mariner -35 45 1 373 294 49 14 chr3 11132489 11132632 -206904526 - MIR SINE MIR -113 149 2 1413 183 183 67 chr3 11133412 11133430 -206903728 + MLT1F1 LTR MaLR 1 16 -551 6430 132 21 70 chr3 11133430 11134724 -206902434 - Tigger3b DNA MER2_type 0 1231 1 1413 183 183 67 chr3 11134724 11134891 -206902267 + MLT1F1 LTR MaLR 16 162 -405 1632 116 0 21 chr3 11134891 11135132 -206902026 - AluSq SINE Alu -77 236 1 1413 183 183 67 chr3 11135132 11135453 -206901705 + MLT1F1 LTR MaLR 162 567 0 253 370 131 24 chr3 11136587 11136867 -206900291 - L2 LINE L2 -269 3003 2695 228 210 48 0 chr3 11137171 11137233 -206899925 - MLT1I LTR MaLR -22 387 323 2361 80 0 46 chr3 11138754 11139079 -206898079 - AluSg SINE Alu 0 310 1 4133 196 31 5 chr3 11139873 11140071 -206897087 - L1MD2 LINE L1 -9 6350 6159 288 0 0 0 chr3 11140071 11140103 -206897055 + (TG)n Simple_repeat Simple_repeat 2 33 0 4133 196 31 5 chr3 11140103 11140794 -206896364 - L1MD2 LINE L1 -200 6159 5437 209 158 23 53 chr3 11140870 11141003 -206896155 + (TA)n Simple_repeat Simple_repeat 1 129 0 223 135 0 39 chr3 11141112 11141164 -206895994 + (TA)n Simple_repeat Simple_repeat 2 51 0 225 221 323 0 chr3 11141229 11141356 -206895802 - L1MDb LINE L1 -4244 2162 1995 621 191 104 22 chr3 11141368 11141580 -206895578 + L1MDb LINE L1 1398 1585 -4957 4425 246 61 36 chr3 11141581 11142722 -206894436 - L1MDb LINE L1 -4425 1981 827 2021 148 6 6 chr3 11142722 11143033 -206894125 - AluSx SINE Alu -1 311 1 4425 246 61 36 chr3 11143033 11143874 -206893284 - L1MDb LINE L1 -5579 827 8 29 28 0 0 chr3 11144418 11144454 -206892704 + AT_rich Low_complexity Low_complexity 1 36 0 383 250 37 28 chr3 11145550 11145658 -206891500 - L2 LINE L2 -6 3266 3158 244 333 85 0 chr3 11145688 11145817 -206891341 - L3 LINE CR1 -258 1319 1180 735 161 27 27 chr3 11145821 11145970 -206891188 - AluJo SINE Alu -163 149 1 1058 213 10 0 chr3 11146075 11146277 -206890881 - MER20 DNA MER1_type 0 219 16 503 221 139 67 chr3 11146428 11146636 -206890522 + MIR SINE MIR 40 262 0 345 82 0 0 chr3 11147096 11147145 -206890013 + (CA)n Simple_repeat Simple_repeat 1 49 0 265 345 16 54 chr3 11147876 11148061 -206889097 - MIR SINE MIR -51 211 34 1812 224 67 14 chr3 11148150 11148730 -206888428 + L1MCa LINE L1 982 1592 -4834 658 203 42 36 chr3 11148728 11148920 -206888238 + L1MC3 LINE L1 6911 7103 -682 * 262 286 0 0 chr3 11148920 11149004 -206888154 + MLT1F1 LTR MaLR 42 125 -442 477 206 0 103 chr3 11149004 11149159 -206887999 + L1MC3 LINE L1 7189 7327 -458 2204 128 0 0 chr3 11149191 11149489 -206887669 + AluSx SINE Alu 1 298 -14 29 28 0 0 chr3 11149489 11149525 -206887633 + AT_rich Low_complexity Low_complexity 1 36 0 1368 180 30 51 chr3 11149525 11149898 -206887260 + L1MC3 LINE L1 7317 7681 -104 380 146 182 55 chr3 11149968 11150095 -206887063 + L1MC3 LINE L1 7643 7995 0 2269 86 0 38 chr3 11150108 11150452 -206886706 + AluY SINE Alu 1 332 0 896 286 49 9 chr3 11150481 11150830 -206886328 + L1MCa LINE L1 1887 2249 -4358 219 216 0 0 chr3 11151948 11151985 -206885173 + polypyrimidine Low_complexity Low_complexity 1 37 0 207 0 0 0 chr3 11151985 11152008 -206885150 + (T)n Simple_repeat Simple_repeat 1 23 0 345 327 33 20 chr3 11153232 11153382 -206883776 - MIR3 SINE MIR -10 198 47 3342 175 17 128 chr3 11154334 11154664 -206882494 + L1MC3 LINE L1 5338 5703 -2292 1207 63 0 0 chr3 11154664 11154822 -206882336 + L1PA5 LINE L1 5997 6154 0 3342 175 17 128 chr3 11154822 11155907 -206881251 + L1MC3 LINE L1 5703 6535 -1460 552 215 35 47 chr3 11155921 11156093 -206881065 + L1MC3 LINE L1 7125 7294 -491 983 217 105 43 chr3 11156103 11156407 -206880751 + MER2 DNA MER2_type 13 335 -10 220 389 22 0 chr3 11156618 11156708 -206880450 - L2 LINE L2 -45 3227 3136 814 152 8 37 chr3 11156850 11157090 -206880068 + MLT1A1 LTR MaLR 1 324 -41 834 239 143 71 chr3 11157442 11157890 -206879268 + MLT1J LTR MaLR 1 480 -31 2395 182 13 0 chr3 11158377 11158843 -206878315 - L1MC3 LINE L1 -10 7775 7304 1704 218 14 6 chr3 11159566 11159928 -206877230 + MLT1A1 LTR MaLR 1 365 0 621 263 33 16 chr3 11161507 11161849 -206875309 - LTR16A LTR ERVL -34 416 33 231 61 0 0 chr3 11162552 11162585 -206874573 + (TG)n Simple_repeat Simple_repeat 2 34 0 485 308 7 14 chr3 11163156 11163302 -206873856 + MLT1J2 LTR MaLR 65 209 -241 319 254 32 13 chr3 11163312 11163413 -206873745 + MLT1J2 LTR MaLR 302 450 0 646 332 46 11 chr3 11163428 11163708 -206873450 - L2 LINE L2 -1314 2000 1711 197 299 21 0 chr3 11163747 11163844 -206873314 + A-rich Low_complexity Low_complexity 6 104 0 237 300 10 0 chr3 11163845 11163945 -206873213 + (ATGGTG)n Simple_repeat Simple_repeat 4 104 0 239 326 7 0 chr3 11163956 11164103 -206873055 + (CAGAGA)n Simple_repeat Simple_repeat 3 150 0 3043 121 0 14 chr3 11164655 11164852 -206872306 - L1PA14 LINE L1 -237 5924 5726 2155 154 30 16 chr3 11164852 11165222 -206871936 - THE1C LTR MaLR 0 375 1 3043 121 0 14 chr3 11165222 11165461 -206871697 - L1PA14 LINE L1 -435 5726 5494 1399 142 9 4 chr3 11165461 11165684 -206871474 + L1PA14 LINE L1 5934 6159 -2 398 239 165 34 chr3 11165826 11166002 -206871156 - L2 LINE L2 -101 3212 3014 1700 194 3 7 chr3 11166005 11166314 -206870844 + AluJb SINE Alu 1 308 -4 23 0 0 0 chr3 11166324 11166347 -206870811 + AT_rich Low_complexity Low_complexity 1 23 0 1884 214 83 53 chr3 11166397 11166870 -206870288 - L1MC5 LINE L1 -302 7659 7159 991 188 21 11 chr3 11166870 11167056 -206870102 + MER5A DNA MER1_type 1 188 -1 1884 214 83 53 chr3 11167056 11167245 -206869913 - L1MC5 LINE L1 -802 7159 6977 515 271 130 10 chr3 11168221 11168587 -206868571 + LTR16A1 LTR ERVL 4 457 0 375 205 0 24 chr3 11168645 11168728 -206868430 + MLT1K LTR MaLR 170 250 -338 901 178 74 35 chr3 11168798 11169029 -206868129 + MER96B DNA MER1_type? 1 240 -177 251 180 33 0 chr3 11169031 11169092 -206868066 + MLT1K LTR MaLR 353 415 -173 211 326 34 22 chr3 11169515 11169604 -206867554 + MIR3 SINE MIR 112 201 -7 556 177 85 0 chr3 11170432 11170572 -206866586 + MER45A DNA AcHobo 1 161 -17 827 262 44 62 chr3 11171069 11171409 -206865749 - MER46C DNA MER2_type -4 334 1 227 79 26 0 chr3 11171915 11171953 -206865205 + (CA)n Simple_repeat Simple_repeat 1 39 0 858 193 133 0 chr3 11172123 11172289 -206864869 + MER5A DNA MER1_type 2 189 0 243 296 57 0 chr3 11172363 11172451 -206864707 + MLT1J1 LTR MaLR 66 158 -288 335 294 153 25 chr3 11172561 11172796 -206864362 + MLT1J LTR MaLR 237 501 -10 274 291 19 16 chr3 11172902 11173022 -206864136 - MIR SINE MIR -64 144 27 307 313 66 18 chr3 11173048 11173214 -206863944 - MER69A DNA AcHobo 0 177 4 481 342 101 17 chr3 11173549 11173786 -206863372 + MIR SINE MIR 2 258 -4 327 245 98 10 chr3 11173808 11173910 -206863248 + MIR3 SINE MIR 67 177 -31 460 191 91 18 chr3 11173955 11174065 -206863093 + L2 LINE L2 3196 3313 0 329 360 49 11 chr3 11175191 11175458 -206861700 + L2 LINE L2 2699 2975 -339 185 0 40 0 chr3 11175550 11175575 -206861583 + (TA)n Simple_repeat Simple_repeat 2 27 0 596 51 58 15 chr3 11176047 11176184 -206860974 + (TA)n Simple_repeat Simple_repeat 2 144 0 245 234 43 43 chr3 11176185 11176279 -206860879 + L2 LINE L2 3128 3221 -92 215 311 107 0 chr3 11176812 11176915 -206860243 + L2 LINE L2 3159 3272 0 633 284 32 5 chr3 11176960 11177150 -206860008 - MIR SINE MIR -10 252 58 1131 217 43 27 chr3 11178797 11179055 -206858103 + Charlie1a DNA MER1_type 1 262 -1193 23704 173 22 48 chr3 11179058 11184813 -206852345 + L1MA3 LINE L1 16 5917 -1807 1817 179 7 3 chr3 11184813 11185115 -206852043 + AluSx SINE Alu 1 303 -9 23704 173 22 48 chr3 11185115 11185135 -206852023 + L1MA3 LINE L1 5917 5936 -1788 947 117 0 22 chr3 11185135 11185315 -206851843 + (GAA)n Simple_repeat Simple_repeat 2 177 0 23704 173 22 48 chr3 11185315 11187441 -206849717 + L1MA3 LINE L1 5936 7711 -13 441 204 176 5 chr3 11187445 11187661 -206849497 + Charlie1a DNA MER1_type 245 497 -958 1928 208 44 20 chr3 11187976 11188429 -206848729 + Charlie1a DNA MER1_type 245 708 -747 599 240 39 29 chr3 11188443 11188651 -206848507 + Charlie1a DNA MER1_type 1244 1453 -2 244 167 30 30 chr3 11188745 11188811 -206848347 + (TCTCTG)n Simple_repeat Simple_repeat 5 70 0 614 133 9 0 chr3 11189904 11190017 -206847141 + (TG)n Simple_repeat Simple_repeat 1 114 0 350 104 0 0 chr3 11190017 11190069 -206847089 + MLT2B1 LTR ERVL 399 517 -3 527 198 10 10 chr3 11190151 11190247 -206846911 - MER81 DNA DNA -17 97 2 24 53 0 0 chr3 11190605 11190643 -206846515 + AT_rich Low_complexity Low_complexity 1 38 0 3913 120 66 66 chr3 11191018 11191792 -206845366 + LTR1 LTR ERV1 12 785 0 353 309 148 38 chr3 11191819 11192011 -206845147 + MIR SINE MIR 5 222 -40 286 284 37 0 chr3 11192167 11192248 -206844910 - LTR33A LTR ERVL -369 154 71 1549 249 60 29 chr3 11192398 11192452 -206844706 + L1MD2 LINE L1 5565 5616 -743 2300 117 42 36 chr3 11192452 11192812 -206844346 - THE1B LTR MaLR 0 364 3 1549 249 60 29 chr3 11192812 11193341 -206843817 + L1MD2 LINE L1 5616 5962 -397 209 357 10 10 chr3 11193797 11193895 -206843263 + MIR SINE MIR 16 113 -149 189 263 113 0 chr3 11194073 11194153 -206843005 + MIR SINE MIR 79 167 -95 2957 75 95 5 chr3 11194748 11195159 -206841999 - LTR7 LTR ERV1 -2 448 1 2422 98 53 13 chr3 11195159 11195536 -206841622 - HERVH LTR ERV1 0 7713 7322 1432 124 18 5 chr3 11195534 11195751 -206841407 - HERVH LTR ERV1 -1894 5819 5600 * 4464 139 1 1 chr3 11195752 11196414 -206840744 - HERVH LTR ERV1 -2564 5149 4488 3410 111 4 6 chr3 11196416 11196919 -206840239 - HERVH LTR ERV1 -3720 3993 3492 903 142 20 0 chr3 11196909 11197057 -206840101 - HERVH LTR ERV1 -4423 3290 3140 * 20629 84 24 18 chr3 11197051 11200021 -206837137 - HERVH LTR ERV1 -4726 2987 1 2894 85 95 5 chr3 11200023 11200434 -206836724 - LTR7 LTR ERV1 -2 448 1 260 383 7 7 chr3 11200732 11200886 -206836272 + MIR SINE MIR 97 250 -12 405 290 82 29 chr3 11202098 11202305 -206834853 + MIR SINE MIR 45 262 0 240 328 39 23 chr3 11202782 11202910 -206834248 - MIR3 SINE MIR -28 180 51 254 313 0 0 chr3 11203118 11203182 -206833976 - MIR SINE MIR -91 117 54 216 0 0 0 chr3 11204514 11204538 -206832620 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2088 104 0 7 chr3 11204540 11204820 -206832338 - AluSx SINE Alu -26 286 9 1366 184 130 12 chr3 11204947 11205286 -206831872 - MLT2D LTR ERVL -34 486 8 416 301 92 60 chr3 11206961 11207210 -206829948 - L2 LINE L2 0 3272 3016 1115 265 76 18 chr3 11207257 11207850 -206829308 - L2 LINE L2 -6 3307 2682 1319 201 60 28 chr3 11207850 11208061 -206829097 + MER49 LTR ERV1 1 226 -697 1894 149 0 0 chr3 11208061 11208379 -206828779 + AluSx SINE Alu 1 318 0 1319 201 60 28 chr3 11208379 11208450 -206828708 + MER49 LTR ERV1 226 293 -630 1539 226 6 12 chr3 11208485 11208830 -206828328 + MER4D LTR ERV1 554 896 -7 403 304 122 21 chr3 11208865 11209151 -206828007 - L2 LINE L2 -660 2654 2340 1179 22 0 7 chr3 11209168 11209307 -206827851 + AluY SINE Alu 160 297 -14 504 270 11 39 chr3 11209349 11209527 -206827631 - L2 LINE L2 -1489 1825 1653 415 287 44 33 chr3 11209558 11209739 -206827419 - L2 LINE L2 -491 2823 2641 637 273 73 36 chr3 11209758 11209978 -206827180 - MIR SINE MIR -30 232 5 222 344 0 0 chr3 11209982 11210043 -206827115 - MIR3 SINE MIR -3 205 145 484 276 101 65 chr3 11210580 11210916 -206826242 + MLT1K LTR MaLR 120 530 -58 271 304 33 0 chr3 11210917 11211009 -206826149 + MIR SINE MIR 114 208 -54 690 225 128 31 chr3 11211022 11211401 -206825757 - MLT1H LTR MaLR -1 548 76 1816 182 0 3 chr3 11211569 11211882 -206825276 + AluJb SINE Alu 1 312 0 1733 233 96 20 chr3 11212935 11213006 -206824152 - MLT1F LTR MaLR 0 542 478 276 30 0 0 chr3 11213006 11213039 -206824119 + (TG)n Simple_repeat Simple_repeat 2 34 0 1733 233 96 20 chr3 11213039 11213457 -206823701 - MLT1F LTR MaLR -64 478 16 2289 107 13 0 chr3 11214839 11215138 -206822020 - AluSx SINE Alu -9 303 1 1755 201 158 26 chr3 11215189 11215735 -206821423 + MLT1E3 LTR MaLR 5 622 -2 414 314 74 26 chr3 11215798 11216027 -206821131 + MIR SINE MIR 12 251 -11 315 322 0 0 chr3 11216079 11216169 -206820989 + L1MC4 LINE L1 6614 6703 -1339 788 172 46 0 chr3 11216375 11216549 -206820609 - L1MD3 LINE L1 -10 7985 7804 217 125 62 23 chr3 11217216 11217344 -206819814 + (TA)n Simple_repeat Simple_repeat 1 133 0 4234 173 54 26 chr3 11217350 11218244 -206818914 + MER21A LTR ERV1 13 931 0 206 313 36 24 chr3 11219161 11219244 -206817914 + L2 LINE L2 3189 3272 0 2133 123 0 32 chr3 11219937 11220253 -206816905 - AluSx SINE Alu -6 306 1 281 313 23 76 chr3 11220407 11220538 -206816620 - L2 LINE L2 0 3272 3149 290 293 101 20 chr3 11220750 11220948 -206816210 - L2 LINE L2 -337 2977 2764 645 307 47 14 chr3 11221392 11221607 -206815551 - MIR SINE MIR -6 256 35 297 169 0 0 chr3 11225520 11225579 -206811579 + (CA)n Simple_repeat Simple_repeat 2 60 0 220 286 0 16 chr3 11225994 11226057 -206811101 - MIR3 SINE MIR -31 177 116 222 224 20 0 chr3 11226107 11226156 -206811002 + L2 LINE L2 3264 3313 0 235 337 105 0 chr3 11226237 11226323 -206810835 + MIR SINE MIR 34 128 -80 1756 182 3 25 chr3 11226835 11227153 -206810005 + AluJb SINE Alu 1 311 -1 189 0 0 0 chr3 11227987 11228008 -206809150 + (T)n Simple_repeat Simple_repeat 1 21 0 546 330 5 11 chr3 11228110 11228298 -206808860 + MER5A DNA MER1_type 1 187 -2 2679 42 0 0 chr3 11231049 11231356 -206805802 + AluY SINE Alu 1 307 -4 312 319 128 84 chr3 11232438 11232773 -206804385 - L2 LINE L2 -5 3267 2918 377 269 246 0 chr3 11232850 11233017 -206804141 - L2 LINE L2 -528 2786 2579 201 74 0 0 chr3 11233259 11233286 -206803872 + (TG)n Simple_repeat Simple_repeat 2 28 0 491 331 18 0 chr3 11233952 11234115 -206803043 + MIR SINE MIR 1 166 -96 184 386 30 20 chr3 11234198 11234299 -206802859 - MER5A DNA MER1_type -29 160 59 210 357 24 32 chr3 11234341 11234467 -206802691 - MIR3 SINE MIR -78 130 6 504 48 0 0 chr3 11234963 11235026 -206802132 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 223 395 8 15 chr3 11235098 11235232 -206801926 + L3 LINE CR1 430 562 -1015 2339 174 19 5 chr3 11235783 11236203 -206800955 - MSTA LTR MaLR -2 426 1 196 350 39 19 chr3 11236309 11236412 -206800746 + L3 LINE CR1 1097 1201 -376 548 375 8 8 chr3 11236519 11236764 -206800394 + MIR SINE MIR 18 262 0 267 357 23 16 chr3 11236770 11236899 -206800259 + L3 LINE CR1 1417 1546 -31 4279 166 44 9 chr3 11237415 11238170 -206798988 + LTR39 LTR ERV1 1 781 -2 335 169 0 146 chr3 11238213 11238302 -206798856 + MER61E LTR ERV1 36 111 -458 * 402 161 0 25 chr3 11238282 11238363 -206798795 + LTR25 LTR ERV1 215 293 -501 845 184 103 49 chr3 11238370 11238593 -206798565 + LTR25 LTR ERV1 230 464 -330 296 100 0 20 chr3 11238663 11238713 -206798445 + (TTTTC)n Simple_repeat Simple_repeat 1 49 0 * 435 152 0 0 chr3 11238709 11238788 -206798370 + C-rich Low_complexity Low_complexity 3 81 0 2093 154 0 0 chr3 11238812 11239124 -206798034 - AluJb SINE Alu 0 312 1 590 224 73 54 chr3 11239458 11239663 -206797495 + MER63A DNA MER1_type 1 209 -1 221 231 19 0 chr3 11239789 11239841 -206797317 - MIR SINE MIR -108 154 102 592 360 77 26 chr3 11239843 11240310 -206796848 + LTR16C LTR ERVL 1 491 0 375 348 14 29 chr3 11240937 11241075 -206796083 + L2 LINE L2 3137 3272 0 815 268 45 0 chr3 11241217 11241441 -206795717 + MIR SINE MIR 2 235 -27 1071 191 50 0 chr3 11241441 11241661 -206795497 + MER46A DNA MER2_type 1 231 -5 194 313 134 42 chr3 11241838 11242055 -206795103 + L2 LINE L2 2843 3079 -193 765 290 136 37 chr3 11242398 11242759 -206794399 + L2 LINE L2 2715 3149 -164 2441 143 23 34 chr3 11242759 11243198 -206793960 - Tigger2a DNA MER2_type 0 434 1 765 290 136 37 chr3 11243198 11243381 -206793777 + L2 LINE L2 3149 3313 0 498 258 10 78 chr3 11243657 11243867 -206793291 + MIR SINE MIR 25 218 -44 1590 266 58 40 chr3 11245453 11246035 -206791123 - MLT1E LTR MaLR 0 593 1 377 256 241 0 chr3 11246120 11246257 -206790901 + MIR SINE MIR 2 171 -91 495 275 92 59 chr3 11246368 11246606 -206790552 + HAL1 LINE L1 2030 2259 -248 1929 173 3 0 chr3 11246606 11246912 -206790246 - AluSx SINE Alu -3 309 3 495 275 92 59 chr3 11246912 11247131 -206790027 + HAL1 LINE L1 2259 2502 -5 367 302 106 55 chr3 11247333 11247588 -206789570 - L1ME LINE L1 -298 5823 5556 297 317 67 0 chr3 11248009 11248113 -206789045 - MER91C DNA MER1_type -29 111 1 240 333 87 40 chr3 11249078 11249204 -206787954 - MIR SINE MIR -111 151 20 338 265 91 8 chr3 11249406 11249538 -206787620 - LTR16C LTR ERVL -4 487 345 803 311 115 21 chr3 11249922 11250434 -206786724 - MLT1K LTR MaLR -15 573 14 1458 235 25 38 chr3 11251003 11251403 -206785755 + MSTD LTR MaLR 1 395 -1 1676 230 20 49 chr3 11251406 11251651 -206785507 + MSTD-int LTR MaLR 2 226 -1509 2130 146 0 0 chr3 11251651 11251952 -206785206 + AluSx SINE Alu 1 301 -11 1676 230 20 49 chr3 11251952 11252215 -206784943 + MSTD-int LTR MaLR 226 495 -1240 4722 160 17 40 chr3 11252215 11252560 -206784598 + MER49 LTR ERV1 1 352 -571 920 28 0 0 chr3 11252560 11252669 -206784489 - L1PA5 LINE L1 0 6154 6046 4722 160 17 40 chr3 11252669 11253256 -206783902 + MER49 LTR ERV1 352 912 -11 4260 244 39 41 chr3 11253263 11254509 -206782649 + MSTD-int LTR MaLR 492 1735 0 986 200 94 28 chr3 11254517 11254827 -206782331 + MSTD LTR MaLR 10 396 0 320 400 8 0 chr3 11255420 11255540 -206781618 + L2 LINE L2 3148 3268 -4 345 253 6 114 chr3 11255822 11255988 -206781170 + MIR SINE MIR 107 254 -8 943 227 114 70 chr3 11256236 11256667 -206780491 + LTR16A1 LTR ERVL 5 454 -3 199 245 118 29 chr3 11256798 11256900 -206780258 - MIR SINE MIR -56 206 96 1718 164 17 24 chr3 11256944 11257236 -206779922 - AluJb SINE Alu -22 290 1 26 30 0 0 chr3 11257987 11258020 -206779138 + AT_rich Low_complexity Low_complexity 1 33 0 215 182 13 0 chr3 11258304 11258381 -206778777 + (TA)n Simple_repeat Simple_repeat 2 79 0 4594 161 21 35 chr3 11259351 11260283 -206776875 + L1MA7 LINE L1 5106 6016 -275 2064 109 25 0 chr3 11260283 11260567 -206776591 + AluSx SINE Alu 1 291 -21 4594 161 21 35 chr3 11260567 11260840 -206776318 + L1MA7 LINE L1 6016 6291 0 1658 207 22 3 chr3 11261162 11261541 -206775617 - MLT2D LTR ERVL -19 445 9 247 91 0 0 chr3 11261677 11261710 -206775448 - U2 snRNA snRNA -155 33 1 650 281 23 0 chr3 11261989 11262210 -206774948 + LTR16C LTR ERVL 266 491 0 351 44 0 0 chr3 11262619 11262664 -206774494 + (TG)n Simple_repeat Simple_repeat 2 46 0 209 218 253 58 chr3 11262669 11262756 -206774402 - L2 LINE L2 0 3313 3210 874 226 55 79 chr3 11262760 11263140 -206774018 - L2 LINE L2 -264 3049 2673 2568 89 92 10 chr3 11263162 11263576 -206773582 - LTR7 LTR ERV1 -2 448 1 213 311 19 19 chr3 11263984 11264090 -206773068 + MIR SINE MIR 43 148 -60 188 224 41 0 chr3 11264512 11264561 -206772597 - L2 LINE L2 -255 3058 3008 625 268 66 66 chr3 11264793 11265040 -206772118 + LTR16C LTR ERVL 100 349 -142 1768 191 43 5 chr3 11265040 11265412 -206771746 - MLT1B LTR MaLR 0 390 5 625 268 66 66 chr3 11265412 11265556 -206771602 + LTR16C LTR ERVL 348 491 0 294 369 31 15 chr3 11266376 11266506 -206770652 + MIR SINE MIR 50 181 -81 189 227 0 0 chr3 11267367 11267411 -206769747 + MER5A DNA MER1_type 7 50 -139 838 171 94 22 chr3 11267425 11267606 -206769552 - MIR SINE MIR -27 235 42 333 246 26 99 chr3 11267646 11267729 -206769429 + L1MC4a LINE L1 5814 5902 -1906 1943 130 33 7 chr3 11267729 11268028 -206769130 + AluSg SINE Alu 1 307 -3 333 246 26 99 chr3 11268028 11268135 -206769023 + L1MC4a LINE L1 5902 5990 -1818 188 286 0 0 chr3 11268334 11268383 -206768775 + MER5A DNA MER1_type 138 186 -3 594 227 0 16 chr3 11268946 11269074 -206768084 - MER3 DNA MER1_type -82 127 2 340 295 32 74 chr3 11269352 11269451 -206767707 + HAL1 LINE L1 1632 1721 -786 1132 272 96 5 chr3 11269451 11269826 -206767332 + MLT1I LTR MaLR 1 409 0 340 295 32 74 chr3 11269826 11269916 -206767242 + HAL1 LINE L1 1721 1813 -694 31 26 0 0 chr3 11270054 11270092 -206767066 + AT_rich Low_complexity Low_complexity 1 38 0 1857 189 115 22 chr3 11270137 11270175 -206766983 - MLT2B1 LTR ERVL 0 520 487 204 40 0 0 chr3 11270175 11270200 -206766958 + (CA)n Simple_repeat Simple_repeat 2 26 0 1857 189 115 22 chr3 11270200 11270578 -206766580 - MLT2B1 LTR ERVL -33 487 65 2272 125 0 0 chr3 11270588 11270900 -206766258 - AluSx SINE Alu 0 312 1 772 130 0 0 chr3 11270900 11271008 -206766150 - AluSq/x SINE Alu -177 135 28 328 164 0 16 chr3 11271010 11271071 -206766087 - MLT2B1 LTR ERVL -351 63 4 23 33 0 0 chr3 11271547 11271577 -206765581 + AT_rich Low_complexity Low_complexity 1 30 0 2139 107 3 10 chr3 11271692 11271991 -206765167 - AluSq SINE Alu -14 299 3 652 319 21 21 chr3 11272097 11272332 -206764826 + MIR SINE MIR 22 256 -6 298 418 0 0 chr3 11272349 11272452 -206764706 - L2 LINE L2 -33 3239 3137 313 263 30 0 chr3 11273737 11273836 -206763322 + MLT1K LTR MaLR 462 563 -25 265 256 22 61 chr3 11275183 11275363 -206761795 + (TATATG)n Simple_repeat Simple_repeat 6 178 0 208 358 9 46 chr3 11275490 11275599 -206761559 + MIR3 SINE MIR 83 187 -21 2188 115 3 0 chr3 11275675 11275980 -206761178 + AluSc SINE Alu 1 306 -3 629 308 110 11 chr3 11277051 11277495 -206759663 - LTR33A LTR ERVL -2 521 16 349 178 56 11 chr3 11278391 11278481 -206758677 - MER53 DNA DNA -1 188 95 825 221 35 0 chr3 11278619 11278791 -206758367 - MER58A DNA MER1_type 0 224 47 1035 176 13 4 chr3 11278861 11279088 -206758070 + L1MB3 LINE L1 5271 5499 -679 912 191 5 0 chr3 11279088 11279284 -206757874 + L1MA4 LINE L1 6096 6295 -5 3385 184 15 32 chr3 11279303 11280015 -206757143 + L1MB3 LINE L1 5476 6175 -8 180 325 48 0 chr3 11280383 11280466 -206756692 - L2 LINE L2 -52 3220 3134 203 178 0 22 chr3 11281090 11281135 -206756023 + (CA)n Simple_repeat Simple_repeat 2 45 0 200 320 58 10 chr3 11281818 11281921 -206755237 + MIR SINE MIR 99 206 -56 27 87 0 0 chr3 11281943 11282012 -206755146 + AT_rich Low_complexity Low_complexity 1 69 0 181 339 10 128 chr3 11282028 11282223 -206754935 + L2 LINE L2 3015 3186 -86 427 318 103 70 chr3 11282486 11283076 -206754082 + L2 LINE L2 2658 3272 0 213 39 0 0 chr3 11283564 11283590 -206753568 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 426 96 0 0 chr3 11283589 11283662 -206753496 + (TA)n Simple_repeat Simple_repeat 2 74 0 265 303 143 8 chr3 11284153 11284272 -206752886 - L2 LINE L2 -1 3271 3137 256 283 0 17 chr3 11285064 11285124 -206752034 - L2 LINE L2 -14 3258 3200 205 222 0 22 chr3 11286008 11286053 -206751105 - MIR SINE MIR -56 152 109 196 176 20 78 chr3 11286059 11286110 -206751048 - L2 LINE L2 -9 3304 3257 259 381 90 13 chr3 11286757 11286912 -206750246 + MIR SINE MIR 19 185 -77 1888 86 0 4 chr3 11286974 11287242 -206749916 + L1PA13 LINE L1 5894 6160 -3 396 295 172 37 chr3 11287267 11287727 -206749431 - MLT1G1 LTR MaLR -50 526 26 2106 141 30 28 chr3 11287800 11288163 -206748995 - THE1B LTR MaLR 0 364 1 681 294 37 60 chr3 11288170 11288469 -206748689 + L2 LINE L2 2836 3127 -186 241 254 0 36 chr3 11288589 11288644 -206748514 + L2 LINE L2 3136 3188 -84 200 250 0 0 chr3 11288857 11288897 -206748261 + (TA)n Simple_repeat Simple_repeat 1 40 0 191 268 205 16 chr3 11289301 11289428 -206747730 - MIR SINE MIR -1 261 111 202 308 46 0 chr3 11289438 11289503 -206747655 + L2 LINE L2 3238 3305 -8 286 253 23 11 chr3 11290784 11290871 -206746287 - MIR SINE MIR -99 163 76 256 184 20 0 chr3 11291005 11291054 -206746104 - L2 LINE L2 -6 3307 3258 435 92 0 0 chr3 11291380 11291445 -206745713 + (TC)n Simple_repeat Simple_repeat 2 66 0 194 207 17 0 chr3 11291444 11291502 -206745656 + (TA)n Simple_repeat Simple_repeat 1 59 0 * 843 233 48 29 chr3 11291782 11291988 -206745170 + MER63A DNA MER1_type 1 210 0 4098 211 30 28 chr3 11292436 11294926 -206742232 + L1MA4 LINE L1 380 3046 -3282 9108 166 25 18 chr3 11294934 11296736 -206740422 + L1MA4 LINE L1 3690 5498 -984 189 0 0 0 chr3 11296736 11296757 -206740401 + (TAA)n Simple_repeat Simple_repeat 2 22 0 9108 166 25 18 chr3 11296757 11297187 -206739971 + L1MA4 LINE L1 5498 5923 -559 232 220 22 22 chr3 11297223 11297314 -206739844 + L1MC4 LINE L1 6616 6706 -1336 2388 180 95 15 chr3 11297363 11297891 -206739267 + L1MA4 LINE L1 5909 6478 -4 695 187 84 0 chr3 11298139 11298236 -206738922 + MER104 DNA Tc2 1 88 -1810 747 50 10 0 chr3 11298236 11298335 -206738823 - L1PA4 LINE L1 -6 6149 6050 695 187 84 0 chr3 11298335 11298403 -206738755 + MER104 DNA Tc2 88 180 0 255 79 0 0 chr3 11298629 11298667 -206738491 + (CA)n Simple_repeat Simple_repeat 1 38 0 202 276 0 17 chr3 11298770 11298828 -206738330 + CT-rich Low_complexity Low_complexity 6 62 0 334 155 127 28 chr3 11298971 11299042 -206738116 + THE1B LTR MaLR 1 78 -286 255 79 0 0 chr3 11300109 11300147 -206737011 + (CA)n Simple_repeat Simple_repeat 1 38 0 202 276 0 17 chr3 11300250 11300308 -206736850 + CT-rich Low_complexity Low_complexity 6 62 0 1853 158 61 28 chr3 11300451 11300758 -206736400 + THE1C LTR MaLR 1 323 -52 2589 118 3 0 chr3 11300758 11301121 -206736037 - THE1B LTR MaLR 0 364 1 1853 158 61 28 chr3 11301121 11301175 -206735983 + THE1C LTR MaLR 323 374 -1 956 312 88 33 chr3 11301252 11301762 -206735396 - L3 LINE CR1 -74 1503 966 2087 222 35 48 chr3 11303130 11303652 -206733506 + MLT2B3 LTR ERVL 1 515 -39 323 199 39 19 chr3 11303678 11303717 -206733441 + (TA)n Simple_repeat Simple_repeat 2 39 -121 2326 88 0 3 chr3 11303717 11304012 -206733146 + AluSp SINE Alu 1 294 -19 323 199 39 19 chr3 11304012 11304128 -206733030 + (TA)n Simple_repeat Simple_repeat 39 160 0 26 0 0 0 chr3 11304128 11304154 -206733004 + AT_rich Low_complexity Low_complexity 1 26 0 344 156 33 39 chr3 11304166 11304346 -206732812 + (TA)n Simple_repeat Simple_repeat 2 180 0 508 101 58 18 chr3 11304367 11304651 -206732507 + (TA)n Simple_repeat Simple_repeat 1 295 0 330 235 59 12 chr3 11304657 11304742 -206732416 + L1MC4 LINE L1 6614 6702 -1340 203 188 21 0 chr3 11304743 11304791 -206732367 + (TA)n Simple_repeat Simple_repeat 1 49 0 241 270 0 11 chr3 11304797 11304886 -206732272 + L1MC4 LINE L1 6614 6701 -1341 229 142 57 19 chr3 11304887 11304993 -206732165 + (TA)n Simple_repeat Simple_repeat 1 110 0 337 258 22 0 chr3 11305021 11305110 -206732048 - L1MC4 LINE L1 -1337 6705 6615 310 286 0 22 chr3 11305030 11305121 -206732037 + L1MC4 LINE L1 6615 6703 -1339 * 562 201 6 6 chr3 11305121 11305300 -206731858 + (TA)n Simple_repeat Simple_repeat 2 180 0 389 161 0 0 chr3 11305317 11305379 -206731779 + MSTD LTR MaLR 335 396 0 203 303 7 123 chr3 11305482 11305637 -206731521 + MER5A DNA MER1_type 4 140 -49 257 153 0 17 chr3 11306898 11306957 -206730201 + (TAGG)n Simple_repeat Simple_repeat 1 58 0 992 149 7 7 chr3 11307043 11307197 -206729961 + AluSq SINE Alu 140 293 -20 360 241 92 35 chr3 11307696 11307837 -206729321 + MIR3 SINE MIR 60 208 0 943 130 0 29 chr3 11308471 11308755 -206728403 + (GGAA)n Simple_repeat Simple_repeat 1 275 0 8739 20 0 2 chr3 11359067 11360772 -206676386 - L1PA3 LINE L1 -150 6005 4305 * 8786 31 4 0 chr3 11360769 11361874 -206675284 + L1PA3 LINE L1 3226 4334 -1812 859 228 6 6 chr3 11361999 11362170 -206674988 - MER5A DNA MER1_type -18 171 1 825 155 33 77 chr3 11362209 11362390 -206674768 - MER58A DNA MER1_type -4 220 48 228 316 38 30 chr3 11362434 11362567 -206674591 + L2 LINE L2 2930 3063 -209 277 293 67 71 chr3 11362587 11362826 -206674332 - L2 LINE L2 0 3313 3076 230 359 104 0 chr3 11362896 11363002 -206674156 + L2 LINE L2 3182 3298 -15 979 260 55 68 chr3 11363113 11363567 -206673591 - L2 LINE L2 0 3313 2866 1218 286 37 45 chr3 11363692 11364205 -206672953 + MLT1J LTR MaLR 3 511 0 267 235 66 52 chr3 11364404 11364540 -206672618 + LTR33 LTR ERVL 381 518 -3 206 71 0 71 chr3 11365588 11365630 -206671528 + (CAGAGA)n Simple_repeat Simple_repeat 2 40 0 228 349 124 24 chr3 11365714 11365883 -206671275 + MIR SINE MIR 20 205 -57 2490 173 143 15 chr3 11365911 11366455 -206670703 - MER90 LTR ERV1 0 614 1 327 85 0 0 chr3 11366521 11366568 -206670590 + (TG)n Simple_repeat Simple_repeat 2 48 0 294 330 62 0 chr3 11367208 11367320 -206669838 - MIR3 SINE MIR -17 191 73 270 304 0 0 chr3 11367423 11367502 -206669656 + MIR SINE MIR 172 250 -12 207 193 0 20 chr3 11367777 11367828 -206669330 - MIR SINE MIR -62 146 105 30 83 0 0 chr3 11368752 11368824 -206668334 + AT_rich Low_complexity Low_complexity 1 72 0 2003 107 28 3 chr3 11369196 11369523 -206667635 - SVA Other Other -339 1047 713 219 69 0 0 chr3 11370092 11370121 -206667037 + (A)n Simple_repeat Simple_repeat 1 29 0 792 304 69 24 chr3 11370139 11370517 -206666641 + LTR67 LTR ERVL 7 401 -156 21 0 0 0 chr3 11370754 11370775 -206666383 + AT_rich Low_complexity Low_complexity 1 21 0 2789 217 44 26 chr3 11372052 11372836 -206664322 + L1ME1 LINE L1 5236 6031 -135 610 211 124 5 chr3 11373478 11373641 -206663517 - MER5A DNA MER1_type -1 188 4 291 216 201 43 chr3 11373950 11374089 -206663069 + MLT1H LTR MaLR 2 162 -387 1937 156 58 22 chr3 11374474 11374834 -206662324 + THE1C LTR MaLR 1 373 -2 1210 322 173 20 chr3 11375535 11376550 -206660608 - L2 LINE L2 -339 2975 1805 236 333 28 0 chr3 11376969 11377041 -206660117 + L2 LINE L2 3240 3313 0 1035 271 0 5 chr3 11378467 11378688 -206658470 - MER58A DNA MER1_type -4 220 1 658 287 60 32 chr3 11378852 11379058 -206658100 + L2 LINE L2 2788 2998 -315 2413 84 0 7 chr3 11379058 11379366 -206657792 - AluY SINE Alu -5 306 1 658 287 60 32 chr3 11379366 11379417 -206657741 + L2 LINE L2 2998 3046 -267 394 233 233 6 chr3 11379428 11379600 -206657558 - LTR33A LTR ERVL -13 510 300 667 293 116 0 chr3 11380000 11380242 -206656916 + L2 LINE L2 3044 3313 0 2134 198 8 3 chr3 11380552 11380935 -206656223 - MLT1B LTR MaLR 0 390 6 459 0 0 0 chr3 11381849 11381900 -206655258 + (CA)n Simple_repeat Simple_repeat 1 51 0 554 205 43 109 chr3 11381959 11382169 -206654989 - MIR3 SINE MIR -9 199 4 299 339 24 8 chr3 11382263 11382387 -206654771 + MIR SINE MIR 18 143 -65 1465 199 19 69 chr3 11382612 11382989 -206654169 - MLT2D LTR ERVL 0 414 57 389 20 0 20 chr3 11383813 11383864 -206653294 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 403 296 124 70 chr3 11383875 11384344 -206652814 - L2 LINE L2 -2 3311 2818 6652 166 20 20 chr3 11384884 11387168 -206649990 - L1MA9 LINE L1 0 6312 4018 542 320 30 56 chr3 11387224 11387493 -206649665 - L2 LINE L2 -47 3225 2964 415 229 147 0 chr3 11387533 11387642 -206649516 + MER20 DNA MER1_type 1 125 -94 * 846 180 42 0 chr3 11387639 11387806 -206649352 + MER20 DNA MER1_type 46 219 0 945 176 42 185 chr3 11388049 11388504 -206648654 - MLT1B LTR MaLR 0 390 1 305 320 23 100 chr3 11388633 11388892 -206648266 + L2 LINE L2 2991 3229 -43 413 320 0 31 chr3 11389622 11389750 -206647408 - MER5A DNA MER1_type 0 189 66 317 257 40 10 chr3 11389900 11390001 -206647157 - MER5A DNA MER1_type -77 112 9 449 242 97 32 chr3 11390795 11390919 -206646239 + MIR SINE MIR 1 132 -130 359 315 130 9 chr3 11391814 11392030 -206645128 + MIR SINE MIR 15 256 -6 296 308 150 28 chr3 11392709 11392956 -206644202 + L2 LINE L2 2986 3262 -10 334 287 93 9 chr3 11393339 11393447 -206643711 - L3 LINE CR1 -2 1575 1459 226 189 0 0 chr3 11393497 11393534 -206643624 - L2 LINE L2 -15 3298 3262 188 258 17 166 chr3 11393585 11393688 -206643470 - L3 LINE CR1 -108 1469 1352 864 158 0 0 chr3 11393688 11393815 -206643343 - FLAM_C SINE Alu -6 127 1 188 258 17 166 chr3 11393815 11394006 -206643152 - L3 LINE CR1 -225 1352 1219 184 147 44 132 chr3 11394456 11394524 -206642634 + L2 LINE L2 3211 3272 0 502 296 102 0 chr3 11394794 11394970 -206642188 + MER117 DNA MER1_type 4 197 0 183 326 180 22 chr3 11395001 11395090 -206642068 - MIR3 SINE MIR -103 105 3 706 216 74 17 chr3 11395806 11395974 -206641184 + MIR SINE MIR 77 257 -5 853 126 69 25 chr3 11395974 11396102 -206641056 - L1MA8 LINE L1 -4 6287 6149 291 28 0 0 chr3 11396102 11396138 -206641020 + (TG)n Simple_repeat Simple_repeat 1 36 0 853 126 69 25 chr3 11396138 11396168 -206640990 - L1MA8 LINE L1 -142 6149 6122 1607 201 68 52 chr3 11397615 11397983 -206639175 + MLT1A2 LTR MaLR 1 374 0 21 0 0 0 chr3 11398205 11398226 -206638932 + AT_rich Low_complexity Low_complexity 1 21 0 1221 266 71 63 chr3 11398822 11399534 -206637624 + L2 LINE L2 2464 3186 -127 2377 97 0 0 chr3 11399534 11399834 -206637324 + AluSc SINE Alu 1 300 -9 1221 266 71 63 chr3 11399834 11399962 -206637196 + L2 LINE L2 3186 3312 -1 1230 206 0 0 chr3 11400037 11400255 -206636903 + AluJo SINE Alu 1 218 -94 28 29 0 0 chr3 11400397 11400432 -206636726 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr3 11400842 11400872 -206636286 + AT_rich Low_complexity Low_complexity 1 30 0 6408 138 14 33 chr3 11402730 11404071 -206633087 - L1MA5A LINE L1 -5 6292 4960 3066 259 84 64 chr3 11404078 11404968 -206632190 + L1ME1 LINE L1 752 1623 -4592 201 39 0 0 chr3 11404968 11404994 -206632164 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 3066 259 84 64 chr3 11404994 11405461 -206631697 + L1ME1 LINE L1 1623 2079 -4136 2710 155 31 18 chr3 11405461 11405912 -206631246 - MSTB2 LTR MaLR 0 457 1 3066 259 84 64 chr3 11405912 11406529 -206630629 + L1ME1 LINE L1 2079 2730 -3485 286 293 0 0 chr3 11406566 11406648 -206630510 - L1ME1 LINE L1 -1200 5015 4934 2740 246 48 18 chr3 11406649 11407768 -206629390 + L1ME1 LINE L1 5039 6347 -56 186 206 0 0 chr3 11407804 11407872 -206629286 + A-rich Low_complexity Low_complexity 1 68 0 337 305 46 38 chr3 11408346 11408477 -206628681 - MLT1K LTR MaLR -285 303 172 2298 173 6 3 chr3 11408616 11408980 -206628178 + MLT1A1 LTR MaLR 1 365 0 2732 132 125 2 chr3 11409032 11409465 -206627693 - LTR12 LTR ERV1 -228 486 1 1155 230 90 69 chr3 11409771 11410237 -206626921 + MLT1K LTR MaLR 1 476 0 257 253 120 41 chr3 11410665 11410810 -206626348 + MIR SINE MIR 17 172 -64 * 273 283 120 61 chr3 11410806 11410994 -206626164 + MIR3 SINE MIR 15 202 -60 220 269 15 15 chr3 11411208 11411275 -206625883 + MIR SINE MIR 34 100 -162 334 327 42 24 chr3 11411383 11411548 -206625610 - MIR SINE MIR -64 198 31 625 259 150 9 chr3 11411634 11411854 -206625304 - MIR SINE MIR -10 252 2 256 169 17 34 chr3 11412211 11412270 -206624888 + CT-rich Low_complexity Low_complexity 1 58 0 216 287 139 25 chr3 11412533 11412655 -206624503 - MIR SINE MIR -70 192 57 512 199 125 0 chr3 11412904 11413024 -206624134 + MIR SINE MIR 34 166 -62 688 269 30 15 chr3 11413112 11413313 -206623845 - MIR SINE MIR -55 207 4 1008 160 43 5 chr3 11413328 11413515 -206623643 - MER20 DNA MER1_type 0 219 26 583 257 0 27 chr3 11413814 11413962 -206623196 + MER104 DNA Tc2 30 173 -7 423 233 275 0 chr3 11414094 11414214 -206622944 - MER91A DNA MER1_type -43 153 1 204 40 0 0 chr3 11414439 11414464 -206622694 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 762 235 37 0 chr3 11415115 11415277 -206621881 + MER58A DNA MER1_type 1 168 0 2194 139 72 31 chr3 11415280 11415768 -206621390 + MLT2A2 LTR ERVL 22 554 0 294 217 17 0 chr3 11415768 11415828 -206621330 + MER58A DNA MER1_type 164 224 0 2155 114 0 26 chr3 11416092 11416400 -206620758 + AluSx SINE Alu 1 300 -12 1595 213 91 28 chr3 11416443 11416922 -206620236 + MER41E LTR ERV1 7 512 0 1058 272 55 35 chr3 11417112 11417546 -206619612 - LTR16C LTR ERVL -5 486 44 633 322 74 27 chr3 11418263 11418670 -206618488 + MLT1K LTR MaLR 21 446 -142 535 316 105 39 chr3 11418810 11419142 -206618016 + L3 LINE CR1 911 1264 -313 371 82 14 0 chr3 11419645 11419708 -206617450 + Alu SINE Alu 243 297 -5 616 263 6 0 chr3 11419831 11419991 -206617167 - MER117 DNA MER1_type -36 161 1 2564 112 5 8 chr3 11420566 11420941 -206616217 - THE1C LTR MaLR 0 375 2 230 282 26 84 chr3 11421476 11421703 -206615455 - L2 LINE L2 0 3313 3100 296 24 24 0 chr3 11421756 11421797 -206615361 + (TGGA)n Simple_repeat Simple_repeat 3 44 0 249 289 40 40 chr3 11422295 11422447 -206614711 + MLT1I LTR MaLR 83 234 -175 21 57 0 0 chr3 11422783 11422818 -206614340 + AT_rich Low_complexity Low_complexity 1 35 0 203 194 0 0 chr3 11423217 11423253 -206613905 + A-rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr3 11423600 11423626 -206613532 + AT_rich Low_complexity Low_complexity 1 26 0 202 194 28 0 chr3 11423800 11423872 -206613286 + (TCCA)n Simple_repeat Simple_repeat 1 74 0 265 305 94 16 chr3 11428478 11428606 -206608552 + MIR3 SINE MIR 5 142 -66 577 235 148 31 chr3 11428852 11429048 -206608110 + MER58A DNA MER1_type 1 219 -5 214 369 45 36 chr3 11430520 11430631 -206606527 + L2 LINE L2 3153 3264 -8 277 271 187 19 chr3 11430686 11430793 -206606365 + L2 LINE L2 3147 3271 -1 264 274 0 0 chr3 11430872 11430945 -206606213 - MER58A DNA MER1_type -1 223 151 31117 108 14 28 chr3 11430945 11437158 -206600000 + L1PA7 LINE L1 26 6151 -3 465 290 43 32 chr3 11437158 11437226 -206599932 - MER58A DNA MER1_type -2232 188 122 3078 69 8 78 chr3 11437226 11437703 -206599455 + MLT2A1 LTR ERVL 1 444 0 465 290 43 32 chr3 11437703 11437820 -206599338 - MER58A DNA MER1_type -2298 122 1 228 111 0 0 chr3 11438068 11438104 -206599054 + (CA)n Simple_repeat Simple_repeat 1 36 0 1181 269 100 36 chr3 11438227 11439026 -206598132 + L1ME3A LINE L1 5291 6140 -30 868 247 119 39 chr3 11439187 11439624 -206597534 + MLT1G LTR MaLR 119 590 0 208 355 116 14 chr3 11439661 11439799 -206597359 - MIR SINE MIR -90 172 21 1623 211 14 14 chr3 11439808 11440173 -206596985 + MLT1A1 LTR MaLR 1 365 0 566 144 0 0 chr3 11440174 11440271 -206596887 + MLT1A1-int LTR MaLR 1 97 -1638 * 936 168 67 5 chr3 11440267 11440475 -206596683 + MLT-int LTR MaLR 1515 1735 0 192 361 107 8 chr3 11442129 11442251 -206594907 - L2 LINE L2 -47 3225 3092 524 242 97 98 chr3 11442309 11442676 -206594482 + MLT1J1 LTR MaLR 66 427 -19 270 0 0 0 chr3 11442715 11442745 -206594413 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 230 313 30 0 chr3 11442745 11442812 -206594346 - L2 LINE L2 -2 3311 3243 512 330 22 16 chr3 11442908 11443090 -206594068 - L2 LINE L2 -252 3061 2879 212 333 127 0 chr3 11444092 11444218 -206592940 + MIR3 SINE MIR 3 144 -64 1315 129 55 0 chr3 11444256 11444473 -206592685 + MER30 DNA MER1_type 2 230 0 1766 164 56 43 chr3 11444506 11444858 -206592300 + MLT2D LTR ERVL 1 347 -67 1679 192 75 21 chr3 11444858 11445233 -206591925 + MSTD LTR MaLR 1 395 -1 354 98 0 0 chr3 11445233 11445284 -206591874 + (CATA)n Simple_repeat Simple_repeat 4 54 0 1766 164 56 43 chr3 11445284 11445326 -206591832 + MLT2D LTR ERVL 346 401 -13 265 326 0 11 chr3 11445335 11445424 -206591734 - L2 LINE L2 -27 3286 3199 2587 213 19 57 chr3 11445435 11446064 -206591094 + MER77 LTR ERV1 1 605 0 273 297 27 27 chr3 11446065 11446176 -206590982 - L2 LINE L2 -10 3303 3193 358 332 41 71 chr3 11446354 11446550 -206590608 + L3 LINE CR1 1020 1209 -368 1078 186 34 0 chr3 11446559 11446763 -206590395 + MER20 DNA MER1_type 3 213 -6 181 414 36 0 chr3 11446805 11446916 -206590242 + L3 LINE CR1 1392 1506 -71 22 56 0 0 chr3 11447161 11447197 -206589961 + AT_rich Low_complexity Low_complexity 1 36 0 544 255 28 49 chr3 11447289 11447351 -206589807 - MIR SINE MIR -61 147 85 1312 183 137 105 chr3 11447351 11447855 -206589303 - MLT2B1 LTR ERVL 0 520 1 544 255 28 49 chr3 11447855 11447976 -206589182 - MIR SINE MIR -123 85 9 504 299 148 2 chr3 11448260 11448678 -206588480 - LTR33 LTR ERVL -2 519 41 514 328 107 10 chr3 11448800 11449279 -206587879 + L1ME4a LINE L1 5503 6027 -94 10998 25 0 0 chr3 11449554 11451610 -206585548 + L1PA3 LINE L1 4097 6152 -3 25 0 0 0 chr3 11451611 11451636 -206585522 + AT_rich Low_complexity Low_complexity 1 25 0 241 287 128 0 chr3 11452017 11452111 -206585047 - MIR SINE MIR -63 145 40 2231 160 68 2 chr3 11452180 11452580 -206584578 + MSTB LTR MaLR 1 426 0 803 191 42 18 chr3 11453180 11453348 -206583810 - FRAM SINE Alu -5 171 1 4906 149 13 11 chr3 11453444 11454476 -206582682 + L1PB2 LINE L1 5118 6151 0 396 200 105 0 chr3 11454730 11454825 -206582333 + Tigger3(Golem) DNA MER2_type 3 107 -2922 269 116 0 0 chr3 11454828 11454871 -206582287 + Tigger3(Golem) DNA MER2_type 2287 2329 -700 2865 100 7 7 chr3 11454873 11455283 -206581875 + L1PB3 LINE L1 5745 6154 0 34 55 0 0 chr3 11455798 11455853 -206581305 + AT_rich Low_complexity Low_complexity 1 55 0 3571 111 65 2 chr3 11455853 11456464 -206580694 + Tigger3(Golem) DNA MER2_type 2378 3027 -2 487 54 68 0 chr3 11456730 11456804 -206580354 + L1PA13 LINE L1 6084 6162 -1 574 296 15 0 chr3 11457075 11457207 -206579951 - L2 LINE L2 0 3272 3139 991 283 46 11 chr3 11457374 11457741 -206579417 + LTR16A LTR ERVL 57 436 -14 485 365 37 10 chr3 11457750 11458084 -206579074 - L2 LINE L2 -292 3021 2681 185 365 19 9 chr3 11458250 11458357 -206578801 - MIR SINE MIR -82 180 73 277 83 317 0 chr3 11458357 11458417 -206578741 + MADE1 DNA Mariner 2 80 0 297 0 0 0 chr3 11459293 11459326 -206577832 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1541 269 74 20 chr3 11459779 11460374 -206576784 - L1ME3A LINE L1 -27 6143 5517 2959 253 89 45 chr3 11460406 11462064 -206575094 - HAL1 LINE L1 -4 2503 773 2186 61 0 4 chr3 11462535 11462797 -206574361 + AluSq SINE Alu 39 299 -14 630 248 41 64 chr3 11463253 11463548 -206573610 - HAL1 LINE L1 -2186 321 34 1052 263 73 16 chr3 11464153 11464534 -206572624 + MLT1D LTR MaLR 1 403 -102 355 171 67 16 chr3 11464566 11464921 -206572237 + (TA)n Simple_repeat Simple_repeat 1 373 0 274 186 0 0 chr3 11464921 11464980 -206572178 + MLT1D LTR MaLR 568 626 0 3372 219 129 87 chr3 11464980 11466295 -206570863 + MLT1D-int LTR MaLR 1 1371 0 1231 208 52 117 chr3 11466295 11466833 -206570325 + MLT1D LTR MaLR 1 503 -2 269 275 65 87 chr3 11466913 11467051 -206570107 + MIR SINE MIR 32 166 -96 583 325 66 26 chr3 11467464 11467843 -206569315 + MARNA DNA Mariner 94 487 -99 446 270 8 24 chr3 11467900 11468026 -206569132 + MIR SINE MIR 28 151 -111 253 246 15 0 chr3 11468031 11468096 -206569062 + MER94 DNA DNA 4 69 -65 4001 150 18 10 chr3 11468098 11468923 -206568235 + Tigger3b DNA MER2_type 1 934 -297 1215 134 0 31 chr3 11468914 11469108 -206568050 + Tigger3b DNA MER2_type 1053 1240 -1 * 967 236 82 40 chr3 11469814 11470212 -206566946 - MER21B LTR ERV1 -123 808 407 428 256 97 102 chr3 11470223 11470396 -206566762 + L2 LINE L2 2368 2540 -774 1593 206 0 0 chr3 11470396 11470678 -206566480 + AluJo SINE Alu 6 287 -25 428 256 97 102 chr3 11470678 11470915 -206566243 + L2 LINE L2 2540 2776 -538 697 281 166 11 chr3 11471379 11471856 -206565302 + L2 LINE L2 2740 3304 -9 191 111 0 28 chr3 11471867 11471903 -206565255 + (GGAA)n Simple_repeat Simple_repeat 3 37 0 2278 115 0 0 chr3 11472552 11472857 -206564301 + AluY SINE Alu 1 305 -6 22 0 0 0 chr3 11473095 11473117 -206564041 + AT_rich Low_complexity Low_complexity 1 22 0 624 268 137 65 chr3 11474518 11475029 -206562129 + MLT1H1 LTR MaLR 5 552 -3 467 281 54 18 chr3 11475064 11475231 -206561927 + L2 LINE L2 2898 3070 -243 2054 164 53 14 chr3 11475504 11475920 -206561238 - MSTB1 LTR MaLR 0 432 1 1448 165 63 14 chr3 11476276 11476455 -206560703 - AluJo SINE Alu -8 304 104 2167 109 12 38 chr3 11476455 11476775 -206560383 - AluSp SINE Alu -1 312 1 1448 165 63 14 chr3 11476775 11476880 -206560278 - AluJo SINE Alu -208 104 6 280 189 14 81 chr3 11477365 11477396 -206559762 - L2 LINE L2 -1 3271 3239 2633 153 26 0 chr3 11477396 11477813 -206559345 + MSTA LTR MaLR 1 428 0 280 189 14 81 chr3 11477813 11477855 -206559303 - L2 LINE L2 -33 3239 3203 195 42 0 0 chr3 11477980 11478004 -206559154 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 212 233 0 70 chr3 11478036 11478122 -206559036 - L2 LINE L2 -75 3238 3159 221 247 37 0 chr3 11478264 11478345 -206558813 - L2 LINE L2 -265 3007 2924 569 182 147 65 chr3 11479410 11479580 -206557578 + LTR41 LTR ERVL 1 184 -589 365 267 127 76 chr3 11479860 11480035 -206557123 + LTR41 LTR ERVL 520 711 -62 918 195 13 49 chr3 11480035 11480261 -206556897 + MER20 DNA MER1_type 1 218 -1 365 267 127 76 chr3 11480261 11480321 -206556837 + LTR41 LTR ERVL 711 767 -6 249 77 77 0 chr3 11480289 11480328 -206556830 + LTR50 LTR ERVL 754 795 0 * 2419 83 3 6 chr3 11480762 11481076 -206556082 + AluSq SINE Alu 1 313 0 181 250 0 42 chr3 11481129 11481177 -206555981 + MER5A DNA MER1_type 44 89 -100 730 193 136 23 chr3 11481231 11481407 -206555751 - MER91A DNA MER1_type 0 196 1 220 287 183 17 chr3 11481489 11481604 -206555554 - L2 LINE L2 0 3272 3139 280 280 134 34 chr3 11481655 11481826 -206555332 - MIR SINE MIR -62 146 17 434 253 104 6 chr3 11482128 11482310 -206554848 + L2 LINE L2 3114 3313 0 234 336 0 19 chr3 11482726 11482833 -206554325 - MIR SINE MIR -64 144 40 833 224 39 24 chr3 11483029 11483234 -206553924 - MLT1H LTR MaLR 0 549 342 194 206 0 0 chr3 11483316 11483350 -206553808 + MIR SINE MIR 111 144 -64 764 282 53 0 chr3 11484611 11484838 -206552320 - MIR SINE MIR -22 240 2 300 312 0 0 chr3 11485060 11485153 -206552005 + MIR SINE MIR 170 262 0 396 40 0 0 chr3 11485926 11485976 -206551182 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 1909 172 0 0 chr3 11486080 11486383 -206550775 - AluSx SINE Alu -7 305 3 305 203 51 38 chr3 11486629 11486708 -206550450 + MER116 DNA Mariner 1 80 0 213 324 0 15 chr3 11486710 11486778 -206550380 - MER5A DNA MER1_type -88 101 35 235 260 178 58 chr3 11486916 11487124 -206550034 + MLT1I LTR MaLR 171 403 -6 1884 253 29 35 chr3 11487753 11488303 -206548855 + MER74B LTR ERVL 76 622 0 234 143 0 79 chr3 11488989 11489052 -206548106 + L1MC4 LINE L1 6897 6954 -1088 649 193 17 0 chr3 11489053 11489172 -206547986 + MLT1D LTR MaLR 9 129 -376 1547 230 8 54 chr3 11489172 11489564 -206547594 + MLT1A2 LTR MaLR 1 374 0 * 1827 167 55 47 chr3 11489564 11489941 -206547217 + MLT1D LTR MaLR 125 504 -1 2176 206 129 24 chr3 11489943 11490580 -206546578 + L1MC3 LINE L1 6897 7600 -185 394 273 16 48 chr3 11491465 11491652 -206545506 + GA-rich Low_complexity Low_complexity 1 181 0 1931 172 27 6 chr3 11492182 11492519 -206544639 - MLT1A1 LTR MaLR 0 365 22 346 339 98 6 chr3 11492717 11492891 -206544267 - MIR SINE MIR -22 240 51 249 341 45 7 chr3 11492905 11493101 -206544057 + MIR SINE MIR 49 253 -9 242 200 0 0 chr3 11493894 11493939 -206543219 - MIR SINE MIR -108 154 110 226 347 0 0 chr3 11493965 11494040 -206543118 - MIR SINE MIR -1 261 187 1288 190 26 15 chr3 11494131 11494559 -206542599 + MLT1C LTR MaLR 1 462 -5 223 287 126 11 chr3 11494682 11494769 -206542389 - MIR SINE MIR -112 150 54 2455 84 0 0 chr3 11494798 11495096 -206542062 + AluY SINE Alu 1 298 -13 234 150 0 0 chr3 11495156 11495196 -206541962 + (CA)n Simple_repeat Simple_repeat 1 40 0 339 250 60 0 chr3 11495838 11495938 -206541220 + L2 LINE L2 3206 3311 -2 243 237 17 0 chr3 11496165 11496224 -206540934 + Charlie7 DNA MER1_type 46 105 -2507 2299 99 0 0 chr3 11496412 11496736 -206540422 - AluSx SINE Alu 0 312 1 1564 156 136 161 chr3 11497450 11497685 -206539473 + LTR64 LTR ERVK 1 240 -318 6118 91 18 21 chr3 11497685 11498885 -206538273 + SVA Other Other 1 868 -592 1564 156 136 161 chr3 11498885 11498898 -206538260 + LTR64 LTR ERVK 240 252 -306 6926 58 6 67 chr3 11498898 11499914 -206537244 + SVA Other Other 433 1386 0 1564 156 136 161 chr3 11499914 11500200 -206536958 + LTR64 LTR ERVK 252 525 -33 2036 118 3 36 chr3 11500200 11500506 -206536652 + AluSx SINE Alu 1 296 -16 1564 156 136 161 chr3 11500506 11500540 -206536618 + LTR64 LTR ERVK 525 558 0 430 284 44 22 chr3 11501088 11501271 -206535887 - MIR SINE MIR -70 192 6 1482 176 31 0 chr3 11502250 11502539 -206534619 + MER33 DNA MER1_type 27 324 0 742 199 239 2 chr3 11503430 11503698 -206533460 - MER2 DNA MER2_type -6 339 10 211 210 0 48 chr3 11503775 11503837 -206533321 + MIR SINE MIR 92 150 -112 352 368 56 7 chr3 11503998 11504267 -206532891 - L3 LINE CR1 -561 1016 735 604 296 39 17 chr3 11504287 11504466 -206532692 + MER5A DNA MER1_type 1 183 -6 352 305 117 0 chr3 11504501 11504655 -206532503 + MER5A DNA MER1_type 18 189 0 782 229 6 28 chr3 11504679 11504858 -206532300 - MER5A DNA MER1_type -6 183 9 4494 187 45 13 chr3 11504990 11505905 -206531253 - L1MB5 LINE L1 -10 6164 5221 127 57 0 0 chr3 11505905 11506116 -206531042 + AT_rich Low_complexity Low_complexity 1 211 0 207 262 20 27 chr3 11506121 11506270 -206530888 + (TTTAA)n Simple_repeat Simple_repeat 1 148 0 22 80 0 0 chr3 11506276 11506326 -206530832 + AT_rich Low_complexity Low_complexity 1 50 0 2982 15 0 6 chr3 11507007 11507345 -206529813 + L1PA3 LINE L1 5819 6154 -1 24 32 0 0 chr3 11507345 11507376 -206529782 + AT_rich Low_complexity Low_complexity 1 31 0 2857 80 6 0 chr3 11508543 11508904 -206528254 - THE1B LTR MaLR -1 363 1 857 204 104 15 chr3 11509461 11509662 -206527496 + MER20 DNA MER1_type 1 219 0 832 223 97 17 chr3 11509928 11510166 -206526992 + LTR16A1 LTR ERVL 201 457 0 380 183 12 12 chr3 11510970 11511052 -206526106 - MER3 DNA MER1_type -5 204 123 235 259 141 15 chr3 11511052 11511187 -206525971 + MIR3 SINE MIR 53 204 -4 891 257 147 7 chr3 11511352 11511644 -206525514 + LTR16A LTR ERVL 118 450 0 428 301 97 5 chr3 11511739 11511945 -206525213 - MIR SINE MIR -2 260 36 225 192 39 0 chr3 11512265 11512317 -206524841 + (CA)n Simple_repeat Simple_repeat 1 54 0 441 242 258 0 chr3 11512347 11512529 -206524629 - MIR SINE MIR -21 241 13 280 293 13 0 chr3 11512653 11512728 -206524430 + GA-rich Low_complexity Low_complexity 4 79 0 455 264 121 0 chr3 11512924 11513064 -206524094 - MIR SINE MIR -34 228 72 203 304 0 18 chr3 11513163 11513219 -206523939 + MIR3 SINE MIR 15 69 -139 238 237 9 18 chr3 11513323 11513437 -206523721 + (TAG)n Simple_repeat Simple_repeat 2 114 0 286 156 31 0 chr3 11513489 11513553 -206523605 + GA-rich Low_complexity Low_complexity 3 68 0 530 298 0 6 chr3 11513555 11513736 -206523422 + (TAG)n Simple_repeat Simple_repeat 1 180 0 288 306 69 14 chr3 11513819 11513963 -206523195 - MIR SINE MIR -7 255 104 449 309 22 22 chr3 11514541 11514722 -206522436 - MIR SINE MIR -50 212 32 440 327 35 80 chr3 11514933 11515334 -206521824 - L2 LINE L2 0 3272 2890 282 233 14 27 chr3 11515856 11515929 -206521229 - MLT1L LTR MaLR -115 500 429 2023 93 0 0 chr3 11516253 11516512 -206520646 + AluY SINE Alu 42 300 -11 212 209 0 0 chr3 11516527 11516570 -206520588 + L2 LINE L2 3265 3307 -6 231 325 8 48 chr3 11516644 11516770 -206520388 - MLT1K LTR MaLR -13 575 455 442 284 0 0 chr3 11517771 11517887 -206519271 + L2 LINE L2 2932 3047 -266 572 254 89 24 chr3 11518307 11518520 -206518638 + MIR SINE MIR 3 229 -33 209 361 57 0 chr3 11518571 11518693 -206518465 + L2 LINE L2 3139 3267 -5 242 200 0 0 chr3 11520365 11520415 -206516743 + (CA)n Simple_repeat Simple_repeat 1 50 0 293 324 37 9 chr3 11520882 11520990 -206516168 + L2 LINE L2 2937 3047 -225 489 181 0 11 chr3 11521323 11521417 -206515741 - MIR SINE MIR -44 218 126 934 285 90 0 chr3 11521508 11521796 -206515362 + MLT1I LTR MaLR 93 406 -3 185 352 76 52 chr3 11521799 11522253 -206514905 + L2 LINE L2 2370 2843 -471 2026 97 10 28 chr3 11522253 11522543 -206514615 - AluSg SINE Alu -22 288 4 185 352 76 52 chr3 11522543 11522682 -206514476 + L2 LINE L2 2843 2977 -337 198 392 58 0 chr3 11522867 11522987 -206514171 + L2 LINE L2 3146 3272 0 389 269 13 12 chr3 11523694 11523835 -206513323 + MIR SINE MIR 2 147 -61 356 294 7 20 chr3 11524200 11524346 -206512812 + MIR SINE MIR 107 250 -12 768 154 14 1 chr3 11524387 11524535 -206512623 - L1P4 LINE L1 -526 5635 5483 851 247 16 6 chr3 11524535 11524717 -206512441 - MER63A DNA MER1_type -25 185 2 345 361 0 15 chr3 11524720 11524853 -206512305 - MIR SINE MIR -113 149 19 744 260 100 9 chr3 11524980 11525211 -206511947 - MIR SINE MIR -10 252 1 961 272 79 14 chr3 11525656 11526377 -206510781 + L2 LINE L2 2546 3313 0 598 148 61 43 chr3 11526643 11526758 -206510400 + MLT1E LTR MaLR 40 156 -437 635 167 0 18 chr3 11526758 11526872 -206510286 + MLT1E LTR MaLR 482 593 0 972 228 11 0 chr3 11528194 11528378 -206508780 + MER5A DNA MER1_type 3 188 -1 469 274 73 40 chr3 11528588 11528956 -206508202 + MLT1H LTR MaLR 25 376 -33 572 273 75 11 chr3 11530094 11530281 -206506877 - MIR SINE MIR -18 244 46 545 272 126 5 chr3 11530398 11530589 -206506569 - MIR SINE MIR -43 219 6 228 35 0 0 chr3 11530975 11531004 -206506154 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 554 285 40 64 chr3 11531173 11531471 -206505687 + MLT1K LTR MaLR 10 300 -288 1749 175 31 3 chr3 11532104 11532390 -206504768 + AluJo SINE Alu 1 294 -18 767 273 13 4 chr3 11532574 11532801 -206504357 + MIR SINE MIR 34 262 0 497 248 5 74 chr3 11533005 11533098 -206504060 - MIR SINE MIR -21 241 143 2817 170 8 0 chr3 11533098 11533587 -206503571 + L1MB3 LINE L1 5690 6182 -1 497 248 5 74 chr3 11533587 11533712 -206503446 - MIR SINE MIR -119 143 39 251 337 0 0 chr3 11534480 11534566 -206502592 - L2 LINE L2 -35 3237 3152 287 276 23 0 chr3 11534586 11534673 -206502485 + MIR SINE MIR 117 205 -57 545 308 89 0 chr3 11534700 11534914 -206502244 - MIR SINE MIR -26 236 4 741 253 138 39 chr3 11535847 11536360 -206500798 - MLT1G1 LTR MaLR 0 595 8 368 213 33 18 chr3 11536370 11536500 -206500658 - MIR SINE MIR -61 147 13 281 163 0 0 chr3 11536501 11536550 -206500608 + L2 LINE L2 3264 3312 -1 2986 6 0 0 chr3 11536575 11536891 -206500267 - AluYb8 SINE Alu -2 316 1 485 30 167 0 chr3 11537022 11537088 -206500070 + MADE1 DNA Mariner 4 80 0 219 298 53 26 chr3 11537493 11537607 -206499551 + MIR SINE MIR 37 153 -109 521 236 91 55 chr3 11537622 11537665 -206499493 + L1ME3A LINE L1 5257 5297 -865 2700 102 8 0 chr3 11537665 11538026 -206499132 - THE1B LTR MaLR 0 364 1 521 236 91 55 chr3 11538026 11538291 -206498867 + L1ME3A LINE L1 5297 5576 -586 437 270 18 108 chr3 11538295 11538573 -206498585 + L1ME3A LINE L1 5685 5937 -233 2322 105 53 14 chr3 11539711 11540072 -206497086 - THE1C LTR MaLR 0 375 1 206 211 56 70 chr3 11540191 11540262 -206496896 + L3 LINE CR1 1370 1439 -138 491 246 8 24 chr3 11540621 11540747 -206496411 + L2 LINE L2 3190 3313 0 521 258 160 24 chr3 11541478 11541691 -206495467 - MIR SINE MIR -19 243 2 442 222 50 4 chr3 11542363 11542503 -206494655 + MER5A DNA MER1_type 4 178 0 203 327 20 20 chr3 11542504 11542605 -206494553 + MER5A DNA MER1_type 86 186 -3 360 0 0 0 chr3 11542959 11542999 -206494159 + (CA)n Simple_repeat Simple_repeat 2 41 0 779 288 105 27 chr3 11543052 11543286 -206493872 + L2 LINE L2 2496 2710 -604 1733 204 101 40 chr3 11543286 11543761 -206493397 - MLT1D LTR MaLR 0 505 2 779 288 105 27 chr3 11543761 11543964 -206493194 + L2 LINE L2 2710 2967 -347 532 203 17 51 chr3 11544642 11544760 -206492398 - MER81 DNA DNA 0 114 1 887 282 80 26 chr3 11544770 11545244 -206491914 - MER115 DNA AcHobo -4 689 148 231 155 52 52 chr3 11545807 11545865 -206491293 - MER113 DNA MER1_type? -432 89 32 381 290 23 78 chr3 11545894 11546050 -206491108 + MIR SINE MIR 48 190 -72 2375 82 7 0 chr3 11546050 11546343 -206490815 + AluY SINE Alu 1 295 -16 381 290 23 78 chr3 11546343 11546403 -206490755 + MIR SINE MIR 190 252 -10 207 233 33 0 chr3 11546411 11546471 -206490687 + (TAG)n Simple_repeat Simple_repeat 3 64 0 2815 86 6 0 chr3 11546527 11546889 -206490269 + THE1B LTR MaLR 1 364 0 727 253 18 22 chr3 11547952 11548181 -206488977 + MIR SINE MIR 35 262 0 188 311 87 19 chr3 11548379 11548482 -206488676 + L2 LINE L2 3203 3312 -1 2139 25 0 0 chr3 11549396 11549634 -206487524 - AluY SINE Alu -13 298 61 180 354 142 0 chr3 11549729 11549842 -206487316 - MIR SINE MIR -16 246 118 425 249 33 106 chr3 11550085 11550330 -206486828 + L3 LINE CR1 1271 1497 -80 286 392 54 5 chr3 11550621 11550825 -206486333 - MIR SINE MIR -29 233 20 487 282 45 6 chr3 11551698 11551854 -206485304 + MIR SINE MIR 30 191 -71 191 195 218 0 chr3 11552750 11552837 -206484321 - MIR SINE MIR -122 140 35 615 228 98 31 chr3 11553173 11553485 -206483673 - LTR33 LTR ERVL -142 379 5 358 245 66 0 chr3 11553593 11553699 -206483459 + MIR SINE MIR 76 188 -74 1145 224 84 45 chr3 11554128 11554700 -206482458 - MLT1E1 LTR MaLR 0 654 1 255 274 0 60 chr3 11555650 11555734 -206481424 + MIR SINE MIR 36 114 -94 292 170 0 0 chr3 11555919 11555966 -206481192 + MER3 DNA MER1_type 41 87 -122 1238 210 33 16 chr3 11555978 11556283 -206480875 + MER33 DNA MER1_type 15 324 0 622 305 103 42 chr3 11556298 11556815 -206480343 + L2 LINE L2 2755 3301 -12 303 330 34 11 chr3 11556977 11557104 -206480054 + MIR SINE MIR 2 131 -77 232 375 0 0 chr3 11557203 11557291 -206479867 + L2 LINE L2 3185 3272 0 1650 144 56 32 chr3 11558198 11558389 -206478769 + L1MA4 LINE L1 5950 6154 -146 2265 129 0 0 chr3 11558389 11558698 -206478460 + AluSx SINE Alu 1 309 -3 1650 144 56 32 chr3 11558698 11558846 -206478312 + L1MA4 LINE L1 6154 6297 -3 586 31 107 0 chr3 11560935 11561094 -206476064 + (TA)n Simple_repeat Simple_repeat 2 177 0 363 44 0 0 chr3 11561238 11561283 -206475875 + (CA)n Simple_repeat Simple_repeat 2 46 0 243 278 67 56 chr3 11561604 11561756 -206475402 + MIR3 SINE MIR 31 184 -53 591 280 40 30 chr3 11563553 11563753 -206473405 + MIR SINE MIR 17 218 -44 284 302 142 0 chr3 11564045 11564151 -206473007 - MIR3 SINE MIR -6 202 82 333 285 81 24 chr3 11566367 11566490 -206470668 - MIR3 SINE MIR -67 141 12 312 310 123 6 chr3 11567646 11567817 -206469341 + MIR SINE MIR 62 252 -10 367 343 0 0 chr3 11568142 11568244 -206468914 - L2 LINE L2 0 3272 3171 1420 225 78 0 chr3 11569112 11569521 -206467637 + Charlie4a DNA MER1_type 8 448 -60 201 300 17 0 chr3 11569597 11569657 -206467501 + (CA)n Simple_repeat Simple_repeat 2 62 0 380 289 38 44 chr3 11569657 11569816 -206467342 + MIR SINE MIR 5 162 -100 370 296 9 26 chr3 11570158 11570273 -206466885 - L2 LINE L2 -171 3101 2989 597 274 16 12 chr3 11571449 11571632 -206465526 - MIR3 SINE MIR -23 185 6 413 319 48 16 chr3 11571635 11571823 -206465335 - L3 LINE CR1 -72 1505 1312 268 149 106 53 chr3 11572498 11572592 -206464566 + L1ME2 LINE L1 5148 5246 -900 217 245 0 0 chr3 11572707 11572756 -206464402 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 213 65 0 0 chr3 11572765 11572796 -206464362 + (CATA)n Simple_repeat Simple_repeat 2 32 0 3085 256 40 9 chr3 11572808 11573672 -206463486 + L1ME2 LINE L1 5255 6145 -19 190 222 0 0 chr3 11575613 11575649 -206461509 - L2 LINE L2 -21 3251 3216 328 317 92 0 chr3 11575673 11575793 -206461365 - MIR SINE MIR -112 150 20 1776 146 78 7 chr3 11575825 11576134 -206461024 + MER46B DNA MER2_type 31 236 0 936 244 69 19 chr3 11576165 11576485 -206460673 - MER113 DNA MER1_type? 0 521 186 403 279 34 78 chr3 11576636 11576815 -206460343 - MIR SINE MIR -46 216 46 628 187 32 16 chr3 11577706 11577829 -206459329 - L2 LINE L2 -13 3300 3176 210 71 0 0 chr3 11578412 11578440 -206458718 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 210 105 0 0 chr3 11578578 11578616 -206458542 + (TG)n Simple_repeat Simple_repeat 2 39 0 33 0 0 0 chr3 11581466 11581499 -206455659 + AT_rich Low_complexity Low_complexity 1 33 0 249 182 0 0 chr3 11582003 11582058 -206455100 + (CA)n Simple_repeat Simple_repeat 2 56 0 225 32 0 0 chr3 11582760 11582791 -206454367 - L1MA3 LINE L1 -1 6304 6274 180 0 0 0 chr3 11582871 11582891 -206454267 + (A)n Simple_repeat Simple_repeat 1 20 0 4265 115 78 29 chr3 11583274 11583352 -206453806 - L1MA9 LINE L1 0 6312 6239 186 43 0 0 chr3 11583352 11583375 -206453783 + (TTG)n Simple_repeat Simple_repeat 1 23 0 1643 175 4 0 chr3 11583375 11583655 -206453503 - AluJo SINE Alu -31 281 1 4265 115 78 29 chr3 11583655 11584069 -206453089 - L1MA9 LINE L1 -73 6239 5767 249 119 0 0 chr3 11584069 11584111 -206453047 + (TG)n Simple_repeat Simple_repeat 1 42 0 4265 115 78 29 chr3 11584111 11584370 -206452788 - L1MA9 LINE L1 -545 5767 5522 681 254 6 6 chr3 11584450 11584627 -206452531 - MER5B DNA MER1_type -1 177 1 313 292 52 0 chr3 11584639 11584735 -206452423 + MER5A DNA MER1_type 5 105 -84 195 284 27 68 chr3 11584973 11585047 -206452111 + MIR SINE MIR 5 75 -187 201 281 129 76 chr3 11585152 11585220 -206451938 + MIR SINE MIR 83 146 -116 853 183 56 6 chr3 11585220 11585400 -206451758 - MER5A DNA MER1_type 0 189 1 201 281 129 76 chr3 11585400 11585502 -206451656 + MIR SINE MIR 146 262 0 778 208 62 6 chr3 11585703 11585881 -206451277 + MIR SINE MIR 74 261 -1 233 264 7 81 chr3 11585996 11586144 -206451014 + MIR SINE MIR 92 228 -34 1079 263 80 65 chr3 11586436 11586884 -206450274 - LTR37B LTR ERV1 -4 464 10 1414 163 0 27 chr3 11586901 11587158 -206450000 - AluJo SINE Alu -54 258 9 186 338 0 27 chr3 11587291 11587365 -206449793 - MIR SINE MIR -118 90 19 305 332 73 44 chr3 11588529 11588734 -206448424 - MIR SINE MIR -20 242 32 268 336 17 42 chr3 11588930 11589049 -206448109 - MIR3 SINE MIR -50 158 43 183 42 0 0 chr3 11589063 11589087 -206448071 + (CTCTG)n Simple_repeat Simple_repeat 4 27 0 198 331 121 0 chr3 11589905 11590029 -206447129 + L2 LINE L2 2905 3043 -229 359 236 111 76 chr3 11590155 11590299 -206446859 - MIR SINE MIR -105 157 9 245 248 220 46 chr3 11590368 11590477 -206446681 + L2 LINE L2 3139 3266 -6 338 293 229 7 chr3 11590630 11590770 -206446388 - MER5A DNA MER1_type -6 183 13 229 250 83 0 chr3 11592080 11592164 -206444994 + MER91C DNA MER1_type 50 140 0 342 296 167 6 chr3 11592349 11592511 -206444647 - MIR SINE MIR -71 191 4 243 323 0 0 chr3 11592601 11592666 -206444492 - L3 LINE CR1 -22 1555 1491 197 325 267 8 chr3 11592718 11592838 -206444320 - L3 LINE CR1 -197 1380 1230 518 226 43 24 chr3 11592900 11593064 -206444094 - L1MEc LINE L1 -6210 186 20 30 0 0 0 chr3 11593972 11594002 -206443156 + AT_rich Low_complexity Low_complexity 1 30 0 304 253 40 30 chr3 11594166 11594265 -206442893 - MER103 DNA DNA -59 107 8 1109 176 23 19 chr3 11594477 11594693 -206442465 - MER20 DNA MER1_type -1 218 2 1145 210 5 0 chr3 11595321 11595526 -206441632 - MER58A DNA MER1_type 0 224 19 252 328 70 23 chr3 11596233 11596361 -206440797 + MIR3 SINE MIR 52 185 -23 184 238 89 59 chr3 11596653 11596754 -206440404 - MIR SINE MIR -72 136 33 * 290 348 63 13 chr3 11596701 11596859 -206440299 + MER5B DNA MER1_type 13 178 0 274 307 13 0 chr3 11596924 11596999 -206440159 - MER5A DNA MER1_type -88 101 26 270 284 60 82 chr3 11597126 11597370 -206439788 + L2 LINE L2 2789 3032 -240 185 364 13 0 chr3 11597453 11597530 -206439628 + L2 LINE L2 3207 3284 -29 268 289 29 19 chr3 11597563 11597667 -206439491 + MER5C DNA MER1_type 1 105 -219 497 288 6 34 chr3 11597866 11598082 -206439076 + G-rich Low_complexity Low_complexity 1 209 0 5725 87 20 26 chr3 11598141 11599458 -206437700 + SVA Other Other 1 868 -520 6600 64 9 63 chr3 11599505 11600872 -206436286 + SVA Other Other 433 1386 0 1079 171 243 59 chr3 11600872 11601158 -206436000 + LTR64 LTR ERVK 179 532 -26 1915 118 3 36 chr3 11601158 11601464 -206435694 + AluSx SINE Alu 1 296 -16 1079 171 243 59 chr3 11601464 11601498 -206435660 + LTR64 LTR ERVK 532 558 0 509 262 49 27 chr3 11602045 11602228 -206434930 - MIR SINE MIR -70 192 6 1477 176 31 0 chr3 11603207 11603496 -206433662 + MER33 DNA MER1_type 27 324 0 1542 109 5 0 chr3 11603727 11603947 -206433211 - AluSg SINE Alu -89 221 1 399 21 0 0 chr3 11605716 11605764 -206431394 + (TTA)n Simple_repeat Simple_repeat 2 49 0 1675 44 5 0 chr3 11605765 11605969 -206431189 - L1PA5 LINE L1 -17 6137 5933 1142 44 0 0 chr3 11605969 11606105 -206431053 + L1PA5 LINE L1 5806 5941 -213 801 268 20 45 chr3 11606250 11606496 -206430662 - MIR SINE MIR -11 251 12 240 269 65 11 chr3 11606673 11606766 -206430392 - MIR SINE MIR -48 214 117 508 281 70 5 chr3 11606782 11606967 -206430191 - MER117 DNA MER1_type 0 197 1 2307 81 3 0 chr3 11607192 11607488 -206429670 + AluSq SINE Alu 1 297 -16 251 122 0 0 chr3 11607748 11607789 -206429369 + MER117 DNA MER1_type 50 90 -107 1664 144 47 23 chr3 11607927 11608226 -206428932 - AluSx SINE Alu -6 306 1 1016 209 62 0 chr3 11608629 11608854 -206428304 + MIR SINE MIR 21 259 -3 887 85 8 0 chr3 11609303 11609433 -206427725 + (TAGA)n Simple_repeat Simple_repeat 3 133 0 1258 180 117 8 chr3 11609433 11609689 -206427469 - AluJo SINE Alu -17 285 2 420 210 100 0 chr3 11609702 11609802 -206427356 + MER5A DNA MER1_type 72 181 -8 416 303 66 20 chr3 11610126 11610278 -206426880 - MIR3 SINE MIR -34 174 16 400 281 42 62 chr3 11611506 11611698 -206425460 + MER5A DNA MER1_type 1 188 -1 1839 113 25 21 chr3 11611778 11612084 -206425074 + AluSg SINE Alu 1 307 0 1257 104 95 54 chr3 11612107 11612328 -206424830 + MER30 DNA MER1_type 1 230 0 391 265 102 18 chr3 11612351 11612517 -206424641 - MIR SINE MIR -76 186 7 346 334 0 6 chr3 11613425 11613441 -206423717 - L1ME3 LINE L1 -1 6163 6148 2029 156 3 44 chr3 11613441 11613535 -206423623 - MER7A DNA MER2_type -2692 346 250 2206 68 24 3 chr3 11613535 11613828 -206423330 + AluY SINE Alu 1 299 -12 2029 156 3 44 chr3 11613828 11614093 -206423065 - MER7A DNA MER2_type -2788 250 4 346 334 0 6 chr3 11614093 11614207 -206422951 - L1ME3 LINE L1 -16 6148 6038 454 333 155 34 chr3 11614937 11615349 -206421809 - L2 LINE L2 0 3272 2811 2649 129 39 5 chr3 11615564 11615976 -206421182 - MSTC LTR MaLR 0 428 3 441 274 108 21 chr3 11617281 11617467 -206419691 - MIR SINE MIR -11 251 50 301 263 0 26 chr3 11618288 11618364 -206418794 + MER103 DNA DNA 24 97 -69 690 204 99 0 chr3 11618374 11618526 -206418632 - MER5A DNA MER1_type -22 167 1 200 83 28 0 chr3 11618648 11618662 -206418496 + (TATG)n Simple_repeat Simple_repeat 4 16 -24 2014 68 0 0 chr3 11618662 11618912 -206418246 - AluY SINE Alu -26 285 36 200 83 28 0 chr3 11618912 11618933 -206418225 + (TATG)n Simple_repeat Simple_repeat 16 40 0 759 163 0 7 chr3 11619964 11620099 -206417059 - FRAM SINE Alu -8 168 35 278 277 11 21 chr3 11620099 11620193 -206416965 - MIR SINE MIR -65 197 105 216 0 0 0 chr3 11621641 11621665 -206415493 + (T)n Simple_repeat Simple_repeat 1 24 0 1158 199 4 13 chr3 11621697 11621923 -206415235 - MER58A DNA MER1_type 0 224 1 383 285 69 49 chr3 11622039 11622183 -206414975 - MIR SINE MIR -12 250 104 363 213 27 0 chr3 11622184 11622259 -206414899 - MER112 DNA MER1_type -6 254 178 213 39 0 0 chr3 11622328 11622354 -206414804 + (TG)n Simple_repeat Simple_repeat 2 27 0 194 361 36 12 chr3 11622419 11622502 -206414656 - MIR SINE MIR -95 113 29 266 296 112 24 chr3 11622936 11623061 -206414097 - MIR3 SINE MIR -70 138 3 705 286 143 36 chr3 11623644 11624168 -206412990 - MLT1G LTR MaLR 0 590 11 749 147 92 65 chr3 11624765 11624949 -206412209 + MER5A DNA MER1_type 1 189 0 226 350 42 33 chr3 11625160 11625280 -206411878 + MIR3 SINE MIR 42 162 -46 651 235 136 0 chr3 11625326 11625488 -206411670 - MIR SINE MIR -65 197 14 845 154 0 0 chr3 11626047 11626177 -206410981 + AluJo SINE Alu 6 135 -177 1081 210 147 52 chr3 11627137 11627485 -206409673 - MER58D DNA MER1_type -3 383 3 437 329 0 22 chr3 11627513 11627650 -206409508 + MIR SINE MIR 20 153 -109 309 288 34 68 chr3 11628386 11628532 -206408626 + MIR SINE MIR 52 192 -70 667 233 71 60 chr3 11628556 11628822 -206408336 + L2 LINE L2 3028 3296 -17 428 359 114 19 chr3 11629018 11629333 -206407825 - L2 LINE L2 -14 3258 2914 264 359 55 7 chr3 11629333 11629478 -206407680 - L2 LINE L2 0 3272 3121 3371 164 84 0 chr3 11629555 11630189 -206406969 + L1MC3 LINE L1 7080 7766 -19 1701 166 0 4 chr3 11630204 11630482 -206406676 - AluJo SINE Alu -27 285 9 31 0 0 0 chr3 11630490 11630521 -206406637 + AT_rich Low_complexity Low_complexity 1 31 0 2835 176 30 23 chr3 11630525 11631134 -206406024 + Charlie1 DNA MER1_type 2149 2761 0 634 194 2 70 chr3 11631145 11631318 -206405840 - MIR SINE MIR -64 144 35 298 271 85 29 chr3 11631693 11631827 -206405331 + MIR SINE MIR 101 243 -19 517 275 77 47 chr3 11631836 11632069 -206405089 + MIR SINE MIR 23 262 0 246 169 0 51 chr3 11632078 11632137 -206405021 + (TATAA)n Simple_repeat Simple_repeat 2 57 0 242 353 139 0 chr3 11632237 11632359 -206404799 - L3 LINE CR1 -114 1463 1325 321 307 31 55 chr3 11632488 11632651 -206404507 - MIR SINE MIR 0 262 104 791 293 4 25 chr3 11632663 11632902 -206404256 - MIR SINE MIR -21 241 8 21 57 0 0 chr3 11634494 11634529 -206402629 + AT_rich Low_complexity Low_complexity 1 35 0 445 317 18 115 chr3 11635332 11635633 -206401525 - L2 LINE L2 0 3272 3016 1616 157 57 0 chr3 11635633 11635914 -206401244 + AluJb SINE Alu 2 298 -14 445 317 18 115 chr3 11635914 11636003 -206401155 - L2 LINE L2 -256 3016 2920 180 103 35 0 chr3 11636030 11636059 -206401099 - L2 LINE L2 -52 3220 3191 4334 225 43 9 chr3 11637754 11638808 -206398350 - L1MC4 LINE L1 -151 7891 6803 998 109 48 0 chr3 11639173 11639338 -206397820 - L1MA8 LINE L1 -6 6285 6113 787 241 50 146 chr3 11639735 11640271 -206396887 - MLT1K LTR MaLR -2 586 102 563 301 7 7 chr3 11641370 11641516 -206395642 - L2 LINE L2 0 3313 3168 655 273 121 4 chr3 11641654 11641885 -206395273 + MIR SINE MIR 2 259 -3 234 81 0 0 chr3 11642116 11642153 -206395005 + (CA)n Simple_repeat Simple_repeat 2 38 0 252 327 27 36 chr3 11642484 11642594 -206394564 - MER5A DNA MER1_type -7 182 74 343 338 34 14 chr3 11642601 11642749 -206394409 - MIR3 SINE MIR -24 184 34 1131 208 0 0 chr3 11642964 11643161 -206393997 - MER58A DNA MER1_type 0 224 28 538 125 0 62 chr3 11643530 11643626 -206393532 + FRAM SINE Alu 72 161 -15 1544 186 40 3 chr3 11643632 11643928 -206393230 + AluJb SINE Alu 6 312 0 2225 116 0 0 chr3 11646245 11646556 -206390602 + AluSx SINE Alu 1 311 -1 826 174 8 0 chr3 11647058 11647190 -206389968 + FLAM_A SINE Alu 1 133 0 215 184 214 61 chr3 11647297 11647395 -206389763 - MIR SINE MIR -92 170 58 394 316 30 8 chr3 11647437 11647570 -206389588 - MIR3 SINE MIR -66 142 7 1410 257 78 36 chr3 11648385 11649094 -206388064 + L2 LINE L2 2554 3313 0 2482 177 47 40 chr3 11649242 11649796 -206387362 + MER74A LTR ERVL 1 558 0 473 276 0 0 chr3 11649852 11649957 -206387201 + L2 LINE L2 3168 3272 0 216 250 58 0 chr3 11649960 11650012 -206387146 - L2 LINE L2 -20 3293 3239 467 350 35 15 chr3 11650019 11650216 -206386942 + MIR SINE MIR 34 234 -28 378 242 0 32 chr3 11650278 11650373 -206386785 - MIR SINE MIR -109 153 62 254 269 158 41 chr3 11650689 11650860 -206386298 + Charlie8 DNA MER1_type 67 257 -2160 238 160 40 0 chr3 11650975 11651025 -206386133 + HSMAR1 DNA Mariner 1236 1287 0 592 194 8 0 chr3 11651036 11651162 -206385996 - L1 LINE L1 -1514 4632 4502 334 267 117 39 chr3 11651327 11651507 -206385651 - L2 LINE L2 -112 3201 3008 716 245 32 0 chr3 11651563 11651718 -206385440 + MLT1H LTR MaLR 2 161 -388 2014 201 61 38 chr3 11651719 11652306 -206384852 - L1M4 LINE L1 -1243 4903 4303 963 264 48 29 chr3 11652323 11652702 -206384456 - L1ME LINE L1 -5632 438 53 3174 82 59 0 chr3 11652706 11653130 -206384028 - MLT2A2 LTR ERVL -4 449 1 2049 139 39 22 chr3 11653179 11653539 -206383619 + L1MB4 LINE L1 5475 5840 -340 1608 191 42 35 chr3 11653539 11653916 -206383242 - MLT1B LTR MaLR -7 383 4 1684 176 17 37 chr3 11653916 11654269 -206382889 + L1MB4 LINE L1 5834 6179 -1 264 341 8 56 chr3 11655064 11655190 -206381968 + MIR SINE MIR 53 172 -90 198 214 24 0 chr3 11655168 11655210 -206381948 + L2 LINE L2 3257 3299 -14 * 315 315 46 0 chr3 11655335 11655443 -206381715 - MIR SINE MIR -62 200 88 186 147 0 29 chr3 11655570 11655604 -206381554 + MIR SINE MIR 117 149 -113 319 303 0 10 chr3 11655721 11655820 -206381338 + L2 LINE L2 3171 3268 -4 386 286 71 0 chr3 11656728 11656854 -206380304 + MIR SINE MIR 51 185 -77 267 333 75 25 chr3 11657048 11657207 -206379951 + MIR SINE MIR 45 211 -51 442 220 121 40 chr3 11657574 11657747 -206379411 - MIR SINE MIR -29 233 47 1248 229 111 60 chr3 11657897 11658330 -206378828 - MER77 LTR ERV1 -7 598 144 347 254 109 57 chr3 11658440 11658588 -206378570 + L1ME4a LINE L1 5897 6061 -60 1744 157 4 0 chr3 11658588 11658897 -206378261 - AluJo SINE Alu 0 310 1 347 254 109 57 chr3 11658897 11658939 -206378219 + L1ME4a LINE L1 6061 6099 -22 479 304 83 12 chr3 11659958 11660126 -206377032 - MIR SINE MIR -62 200 21 2342 100 36 28 chr3 11660620 11660981 -206376177 + THE1B LTR MaLR 1 364 0 241 157 39 20 chr3 11661033 11661084 -206376074 + GA-rich Low_complexity Low_complexity 1 52 0 1435 313 148 19 chr3 11661496 11662455 -206374703 + L3 LINE CR1 418 1500 -77 330 224 82 12 chr3 11663260 11663345 -206373813 - MIR SINE MIR -76 132 42 1319 202 0 13 chr3 11663600 11663833 -206373325 + Tigger7 DNA MER2_type 1 230 -475 2093 124 0 0 chr3 11663857 11664156 -206373002 + AluSx SINE Alu 1 299 -13 657 158 0 0 chr3 11664182 11664277 -206372881 + Tigger7 DNA MER2_type 2393 2487 0 459 217 63 72 chr3 11664477 11664684 -206372474 + L1MC5 LINE L1 7719 7923 -38 788 231 92 57 chr3 11665394 11665542 -206371616 - MER113 DNA MER1_type? -25 496 355 1521 187 42 3 chr3 11665542 11665825 -206371333 + AluJb SINE Alu 1 294 -18 788 231 92 57 chr3 11665825 11665992 -206371166 - MER113 DNA MER1_type? -166 355 170 373 318 30 0 chr3 11666166 11666298 -206370860 - MER69 DNA AcHobo -2297 229 94 780 213 0 3 chr3 11666420 11666765 -206370393 + (CAT)n Simple_repeat Simple_repeat 1 344 0 673 293 68 20 chr3 11666767 11667016 -206370142 - MIR SINE MIR 0 262 2 1705 182 0 3 chr3 11667579 11667876 -206369282 + AluSx SINE Alu 1 296 -16 340 383 0 0 chr3 11667936 11668064 -206369094 + MIR SINE MIR 16 143 -65 192 77 0 0 chr3 11668419 11668445 -206368713 + (TG)n Simple_repeat Simple_repeat 1 26 0 185 143 0 0 chr3 11668517 11668552 -206368606 - MIR SINE MIR -126 136 102 2528 88 11 6 chr3 11668644 11668996 -206368162 + THE1A LTR MaLR 2 355 0 4808 159 37 4 chr3 11669535 11670372 -206366786 - MER6 DNA MER2_type 0 865 1 562 247 155 101 chr3 11670372 11670907 -206366251 + L1ME4a LINE L1 5555 6118 -3 182 260 178 14 chr3 11671035 11671108 -206366050 + MIR SINE MIR 59 143 -119 983 88 7 0 chr3 11671279 11671427 -206365731 - L1PA6 LINE L1 -1 6153 6005 606 303 131 17 chr3 11671636 11671996 -206365162 - LTR33 LTR ERVL -4 517 117 1474 194 55 35 chr3 11672001 11672347 -206364811 - MLT1A1 LTR MaLR -3 362 10 429 206 114 15 chr3 11672353 11672484 -206364674 - LTR33 LTR ERVL -372 149 6 387 298 76 41 chr3 11673797 11674179 -206362979 + MLT1K LTR MaLR 156 580 -8 336 303 102 3 chr3 11674712 11674885 -206362273 + MIR SINE MIR 30 221 -41 1403 188 78 20 chr3 11674896 11675241 -206361917 - MLT1A1 LTR MaLR 0 365 1 1032 150 20 0 chr3 11675684 11675837 -206361321 + FRAM SINE Alu 1 153 -23 443 241 12 68 chr3 11675843 11675876 -206361282 - MIR SINE MIR 0 262 229 2179 120 28 11 chr3 11675876 11676234 -206360924 + THE1B LTR MaLR 1 364 0 443 241 12 68 chr3 11676234 11676362 -206360796 - MIR SINE MIR -33 229 110 626 164 66 0 chr3 11676666 11676788 -206360370 - THE1C LTR MaLR -245 130 1 392 230 0 0 chr3 11676823 11676897 -206360261 - AluJ/FRAM SINE Alu -5 297 224 785 264 15 5 chr3 11677205 11677406 -206359752 + MIR SINE MIR 60 262 0 40989 33 25 2 chr3 11677442 11683452 -206353706 + L1PA3 LINE L1 1 6154 -1 326 250 30 20 chr3 11683715 11683815 -206353343 - MER20B DNA MER1_type -639 144 44 1056 216 116 9 chr3 11685036 11685352 -206351806 + MLT1G3 LTR MaLR 182 571 -19 215 330 30 94 chr3 11685953 11686054 -206351104 + L2 LINE L2 2702 2785 -529 2236 124 22 28 chr3 11686054 11686418 -206350740 + THE1B LTR MaLR 3 364 0 215 330 30 94 chr3 11686418 11686519 -206350639 + L2 LINE L2 2785 2891 -423 372 270 151 6 chr3 11687432 11687600 -206349558 + MIR SINE MIR 3 192 -63 542 229 0 8 chr3 11688257 11688375 -206348783 + MIR SINE MIR 26 142 -66 194 345 24 0 chr3 11689787 11689871 -206347287 - L2 LINE L2 -24 3248 3163 215 286 19 48 chr3 11689911 11690016 -206347142 - L2 LINE L2 -4 3309 3208 704 280 32 0 chr3 11690513 11690699 -206346459 - MER58A DNA MER1_type -3 221 30 641 250 162 26 chr3 11690792 11691132 -206346026 + L2 LINE L2 2926 3311 -2 218 256 13 0 chr3 11691138 11691216 -206345942 + GA-rich Low_complexity Low_complexity 3 81 0 471 246 78 7 chr3 11691596 11691738 -206345420 + MIR SINE MIR 1 152 -110 1870 230 62 45 chr3 11692349 11692901 -206344257 + MLT1K LTR MaLR 13 573 -15 225 300 208 0 chr3 11693452 11693572 -206343586 - L2 LINE L2 -2 3311 3167 249 225 56 56 chr3 11693793 11693882 -206343276 + MIR3 SINE MIR 104 192 -16 1295 250 59 44 chr3 11694375 11694769 -206342389 + MLT1C LTR MaLR 1 404 -63 2431 75 0 13 chr3 11694769 11695075 -206342083 - AluY SINE Alu -9 302 1 1295 250 59 44 chr3 11695075 11695136 -206342022 + MLT1C LTR MaLR 404 463 -4 408 298 33 8 chr3 11695361 11695482 -206341676 - MIR3 SINE MIR -6 202 79 215 363 12 0 chr3 11696899 11696979 -206340179 - L2 LINE L2 -1 3312 3232 754 301 4 9 chr3 11697000 11697226 -206339932 + MIR SINE MIR 13 237 -25 185 108 27 0 chr3 11697246 11697283 -206339875 + (CACCAT)n Simple_repeat Simple_repeat 6 43 0 223 322 26 52 chr3 11697433 11697548 -206339610 - L2 LINE L2 -213 3059 2948 181 282 64 39 chr3 11697778 11697856 -206339302 - MIR3 SINE MIR -17 191 112 534 231 50 0 chr3 11698424 11698545 -206338613 - MIR3 SINE MIR -12 196 70 484 391 29 0 chr3 11698822 11699029 -206338129 + MIR SINE MIR 19 231 -31 2272 82 6 57 chr3 11699059 11699376 -206337782 - AluSq SINE Alu -12 301 1 217 264 191 18 chr3 11700013 11700123 -206337035 - MIR SINE MIR -119 143 15 851 228 73 0 chr3 11700788 11700994 -206336164 - MER58A DNA MER1_type -3 221 1 388 296 138 13 chr3 11701004 11701156 -206336002 - MER5A DNA MER1_type -3 186 5 1338 231 170 19 chr3 11702085 11702497 -206334661 + MLT1H1 LTR MaLR 65 538 -17 869 253 92 4 chr3 11702498 11702747 -206334411 + LTR16B LTR ERVL 194 464 0 607 203 16 31 chr3 11702758 11702886 -206334272 - MIR SINE MIR -117 145 20 305 143 0 18 chr3 11702894 11702950 -206334208 + Tigger5 DNA MER2_type 1 55 -2268 639 299 79 0 chr3 11703316 11703493 -206333665 - MIR3 SINE MIR -10 198 8 198 269 65 32 chr3 11703696 11703789 -206333369 + L2 LINE L2 2943 3038 -234 274 345 90 23 chr3 11703854 11704031 -206333127 + L2 LINE L2 2701 2889 -425 284 250 12 12 chr3 11704291 11704371 -206332787 + L2 LINE L2 3193 3272 0 189 195 0 0 chr3 11704429 11704470 -206332688 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 224 268 56 14 chr3 11705133 11705204 -206331954 - L2 LINE L2 -8 3305 3232 1840 291 94 30 chr3 11705346 11706313 -206330845 + L1M4 LINE L1 3879 4953 -1193 808 233 78 91 chr3 11706313 11706841 -206330317 + LTR33 LTR ERVL 1 521 0 1840 291 94 30 chr3 11706841 11707176 -206329982 + L1M4 LINE L1 4953 5265 -881 1769 158 0 46 chr3 11707231 11707554 -206329604 + AluSx SINE Alu 1 308 -4 227 111 0 22 chr3 11707723 11707768 -206329390 + (GGAA)n Simple_repeat Simple_repeat 2 45 0 219 292 62 31 chr3 11707935 11708031 -206329127 + MIR SINE MIR 56 154 -108 206 306 14 0 chr3 11708766 11708838 -206328320 + MIR SINE MIR 58 130 -78 2361 89 16 0 chr3 11709585 11709889 -206327269 + AluY SINE Alu 1 309 -2 437 221 131 8 chr3 11710085 11710207 -206326951 + MER5A DNA MER1_type 9 145 -44 371 250 12 0 chr3 11710616 11710700 -206326458 + L2 LINE L2 3186 3270 -2 670 235 0 15 chr3 11710774 11710910 -206326248 - MLT1A1 LTR MaLR 0 365 232 1931 133 2 60 chr3 11710912 11711312 -206325846 - MER4B LTR ERV1 0 610 234 219 313 12 0 chr3 11712678 11712758 -206324400 - MIR SINE MIR -13 249 169 682 226 34 34 chr3 11712760 11712937 -206324221 - MIR SINE MIR -64 198 22 257 273 30 0 chr3 11713342 11713408 -206323750 + MIR SINE MIR 69 136 -126 436 256 39 32 chr3 11714902 11714975 -206322183 - MER103 DNA DNA -8 158 87 1877 138 40 6 chr3 11714975 11715301 -206321857 - MER1B DNA MER1_type 0 337 1 436 256 39 32 chr3 11715301 11715383 -206321775 - MER103 DNA DNA -79 87 2 548 296 105 39 chr3 11716125 11716459 -206320699 + L2 LINE L2 2958 3313 0 210 150 0 0 chr3 11716461 11716501 -206320657 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 24 0 0 0 chr3 11718945 11718969 -206318189 + AT_rich Low_complexity Low_complexity 1 24 0 300 262 24 0 chr3 11720537 11720621 -206316537 - MER117 DNA MER1_type 0 197 112 596 172 101 65 chr3 11721323 11721492 -206315666 + MLT1B LTR MaLR 1 175 -215 1759 148 16 30 chr3 11721492 11721795 -206315363 + AluJb SINE Alu 1 299 -13 902 198 0 23 chr3 11722343 11722520 -206314638 + MIR SINE MIR 63 235 -27 522 275 225 39 chr3 11723507 11723965 -206313193 + L2 LINE L2 2373 2915 -399 340 343 39 34 chr3 11723974 11724178 -206312980 - L1MC4 LINE L1 -17 8025 7821 1816 145 0 26 chr3 11724180 11724491 -206312667 - AluJo SINE Alu -9 303 1 557 267 18 120 chr3 11724496 11724829 -206312329 + L2 LINE L2 2886 3184 -129 378 171 0 0 chr3 11724847 11724917 -206312241 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 426 296 48 0 chr3 11724940 11725065 -206312093 + L2 LINE L2 3182 3312 -1 438 234 177 40 chr3 11725068 11725243 -206311915 - MIR SINE MIR -17 245 47 3692 262 61 18 chr3 11726123 11727237 -206309921 + L1MB7 LINE L1 11 1172 -5687 12682 204 40 41 chr3 11727239 11727329 -206309829 + L1MB7 LINE L1 2672 2761 -4234 1733 172 28 8 chr3 11727329 11727689 -206309469 + L1MA6 LINE L1 5934 6300 0 12682 204 40 41 chr3 11727689 11729499 -206307659 + L1MB7 LINE L1 2761 4571 -2424 1851 135 7 3 chr3 11729499 11729820 -206307338 + AluSx SINE Alu 1 322 0 12682 204 40 41 chr3 11729820 11732274 -206304884 + L1MB7 LINE L1 4571 6995 0 2072 109 0 3 chr3 11732427 11732744 -206304414 + AluSc SINE Alu 1 316 0 1302 234 11 34 chr3 11732748 11733102 -206304056 + L1ME1 LINE L1 5818 6163 -3 1595 256 156 29 chr3 11733130 11733991 -206303167 + L1M4 LINE L1 4297 5266 -880 247 236 0 0 chr3 11742435 11742490 -206294668 + Tigger5 DNA MER2_type 139 193 -2130 441 209 0 11 chr3 11742495 11742586 -206294572 + Tigger5 DNA MER2_type 2234 2323 0 253 185 99 49 chr3 11742817 11742898 -206294260 - MIR SINE MIR -117 145 61 315 0 0 0 chr3 11743153 11743188 -206293970 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 344 256 0 12 chr3 11743296 11743378 -206293780 - MER58A DNA MER1_type -26 81 1 272 287 52 59 chr3 11744673 11744809 -206292349 - MIR3 SINE MIR -62 146 12 1081 188 43 4 chr3 11745344 11745578 -206291580 + L1MB3 LINE L1 5939 6181 -2 203 324 54 27 chr3 11745661 11745809 -206291349 + L2 LINE L2 2678 2829 -485 267 239 14 14 chr3 11745923 11745994 -206291164 + GA-rich Low_complexity Low_complexity 4 74 0 221 350 82 21 chr3 11746558 11746655 -206290503 + L2 LINE L2 3124 3226 -46 431 303 236 12 chr3 11747618 11747872 -206289286 + L3 LINE CR1 1187 1497 -80 345 333 122 24 chr3 11748461 11748674 -206288484 - MIR SINE MIR -6 256 23 600 290 0 7 chr3 11749173 11749318 -206287840 - MIR3 SINE MIR -63 145 2 212 261 46 0 chr3 11750322 11750387 -206286771 - MIR SINE MIR -69 193 126 184 286 0 0 chr3 11752243 11752285 -206284873 + L2 LINE L2 3264 3305 -8 203 281 47 31 chr3 11752488 11752552 -206284606 + L3 LINE CR1 1219 1283 -294 619 152 29 0 chr3 11752800 11752905 -206284253 + ERVL LTR ERVL 3720 3827 -1937 537 259 96 18 chr3 11753437 11753603 -206283555 - MIR SINE MIR -56 206 28 601 266 31 35 chr3 11754328 11754557 -206282601 + LTR16A LTR ERVL 223 450 0 1393 271 143 37 chr3 11754669 11755762 -206281396 + L2 LINE L2 2087 3313 0 441 272 72 8 chr3 11756669 11756794 -206280364 - MIR3 SINE MIR -33 175 43 195 175 50 0 chr3 11756824 11756864 -206280294 - MIR SINE MIR -84 124 83 477 298 32 50 chr3 11758017 11758235 -206278923 + L2 LINE L2 2935 3148 -124 225 227 15 45 chr3 11758512 11758578 -206278580 - L3 LINE CR1 -5 1572 1509 668 241 28 77 chr3 11759028 11759314 -206277844 - L1ME3A LINE L1 0 6170 5899 1546 202 35 26 chr3 11759314 11759656 -206277502 - MLT1A2 LTR MaLR 0 374 30 511 269 96 40 chr3 11759666 11759915 -206277243 - L1MC4a LINE L1 -1919 5889 5627 198 143 0 0 chr3 11761470 11761505 -206275653 + (GA)n Simple_repeat Simple_repeat 2 36 0 241 278 134 0 chr3 11761896 11761993 -206275165 - L2 LINE L2 -7 3265 3156 754 235 12 6 chr3 11762017 11762179 -206274979 - MIR SINE MIR -65 197 35 1871 137 0 17 chr3 11762226 11762547 -206274611 - AluSx SINE Alu 0 312 1 189 247 0 82 chr3 11762739 11762824 -206274334 - L2 LINE L2 -67 3205 3128 230 241 98 60 chr3 11762884 11763017 -206274141 - L2 LINE L2 -169 3103 2966 213 216 0 0 chr3 11763078 11763115 -206274043 + polypurine Low_complexity Low_complexity 2 38 0 469 271 119 19 chr3 11763397 11763607 -206273551 + MIR SINE MIR 20 250 -12 180 0 0 0 chr3 11764217 11764237 -206272921 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 703 283 64 21 chr3 11764264 11764497 -206272661 - MIR SINE MIR 0 262 20 218 241 55 76 chr3 11764730 11764875 -206272283 + L2 LINE L2 2966 3107 -165 187 133 44 0 chr3 11765053 11765098 -206272060 + (TCCA)n Simple_repeat Simple_repeat 4 50 0 216 368 47 0 chr3 11765236 11765342 -206271816 - L2 LINE L2 -208 3064 2954 464 294 134 24 chr3 11765499 11765732 -206271426 - LTR33 LTR ERVL -92 429 156 3490 105 85 11 chr3 11765732 11766286 -206270872 + LTR61 LTR ERV1 1 595 0 464 294 134 24 chr3 11766286 11766344 -206270814 - LTR33 LTR ERVL -365 156 106 191 277 34 74 chr3 11766551 11766699 -206270459 + L2 LINE L2 2894 3035 -237 1935 190 72 27 chr3 11766863 11767154 -206270004 - LTR40b LTR ERVL 0 462 143 1918 171 48 14 chr3 11767154 11767505 -206269653 + THE1B LTR MaLR 2 364 0 1935 190 72 27 chr3 11767505 11767655 -206269503 - LTR40b LTR ERVL -319 143 1 308 287 11 0 chr3 11767820 11767907 -206269251 + MIR SINE MIR 127 214 -48 350 312 81 41 chr3 11768465 11768686 -206268472 - MIR SINE MIR -31 231 2 310 326 56 14 chr3 11769955 11770099 -206267059 - MIR3 SINE MIR -56 152 3 410 276 14 35 chr3 11770554 11770699 -206266459 + GA-rich Low_complexity Low_complexity 2 143 0 235 258 137 16 chr3 11771769 11771893 -206265265 - LTR16A1 LTR ERVL 0 457 319 2290 166 19 26 chr3 11771918 11772335 -206264823 - MER21A LTR ERV1 -3 928 515 2656 170 18 13 chr3 11772364 11772865 -206264293 - MER41B LTR ERV1 -12 571 100 250 133 27 0 chr3 11772892 11772934 -206264224 - MER41C LTR ERV1 -591 44 1 1691 181 131 0 chr3 11772934 11773271 -206263887 - MER21B LTR ERV1 -482 381 1 237 152 0 22 chr3 11773356 11773402 -206263756 + Alu SINE Alu 122 166 -9 29 47 0 0 chr3 11773402 11773445 -206263713 + AT_rich Low_complexity Low_complexity 1 43 0 370 202 10 19 chr3 11774306 11774410 -206262748 + GA-rich Low_complexity Low_complexity 4 106 0 2585 225 76 25 chr3 11774576 11775382 -206261776 + L1MC4a LINE L1 6844 7690 -118 1678 122 0 0 chr3 11775385 11775623 -206261535 + HERVE LTR ERV1 987 1224 -6589 2254 215 150 24 chr3 11775623 11778383 -206258775 - SATR1 Satellite Satellite -1 3107 1 23 0 0 0 chr3 11778474 11778497 -206258661 + AT_rich Low_complexity Low_complexity 1 23 0 19349 102 13 9 chr3 11778730 11781459 -206255699 + HERVE LTR ERV1 1108 3846 -3967 1497 223 92 37 chr3 11781470 11782129 -206255029 - SATR1 Satellite Satellite -1 695 1 4521 79 2 13 chr3 11782578 11783183 -206253975 + HERVE LTR ERV1 3249 3846 -3967 1462 255 101 56 chr3 11783254 11784137 -206253021 - SATR1 Satellite Satellite -20 922 1 4392 92 3 8 chr3 11784201 11784802 -206252356 + HERVE LTR ERV1 3249 3846 -3967 1418 240 105 70 chr3 11784866 11785760 -206251398 - SATR1 Satellite Satellite -20 925 1 13787 94 12 19 chr3 11786387 11788324 -206248834 + HERVE LTR ERV1 3249 5172 -2641 2385 169 112 6 chr3 11788324 11789936 -206247222 - SATR1 Satellite Satellite -3 1782 1 1902 175 96 75 chr3 11789969 11790611 -206246547 - SATR1 Satellite Satellite -2 655 1 547 262 169 62 chr3 11790648 11790938 -206246220 - SATR1 Satellite Satellite -2 468 148 1352 176 239 24 chr3 11790952 11791332 -206245826 - SATR1 Satellite Satellite -2 468 7 1007 197 289 22 chr3 11791355 11791813 -206245345 - SATR1 Satellite Satellite -1 580 1 1410 104 23 14 chr3 11791817 11792037 -206245121 - AluSq SINE Alu -91 222 1 771 227 40 0 chr3 11793931 11794129 -206243029 + MER6B DNA MER2_type 5 210 0 389 228 97 9 chr3 11794233 11794347 -206242811 - MER5B DNA MER1_type -5 173 50 180 0 0 0 chr3 11794347 11794367 -206242791 + (T)n Simple_repeat Simple_repeat 1 20 0 1672 127 6 83 chr3 11794541 11794880 -206242278 - AluSp SINE Alu 0 313 1 283 210 133 63 chr3 11794885 11795028 -206242130 - HsTC2 DNA Tc2 -115 1783 1631 1378 202 3 82 chr3 11795070 11795253 -206241905 + L1MA4 LINE L1 5771 5908 -392 1624 167 0 4 chr3 11795253 11795534 -206241624 + AluSx SINE Alu 1 280 -32 1378 202 3 82 chr3 11795534 11795741 -206241417 + L1MA4 LINE L1 5908 6130 -170 1996 120 3 3 chr3 11795821 11796129 -206241029 - AluSp SINE Alu -5 308 1 3011 232 25 44 chr3 11796167 11797164 -206239994 + L1MB3 LINE L1 4818 5832 -351 1778 139 0 4 chr3 11797164 11797438 -206239720 + AluSx SINE Alu 7 279 -33 192 111 0 0 chr3 11797444 11797480 -206239678 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 3011 232 25 44 chr3 11797480 11797585 -206239573 + L1MB3 LINE L1 5837 5942 -241 1937 145 0 0 chr3 11797585 11797889 -206239269 + AluSx SINE Alu 1 304 -8 3011 232 25 44 chr3 11797889 11798139 -206239019 + L1MB3 LINE L1 5942 6153 -30 977 214 241 58 chr3 11798501 11799304 -206237854 - SATR1 Satellite Satellite -2 949 1 957 227 330 9 chr3 11799343 11800012 -206237146 - SATR1 Satellite Satellite -1 883 1 1229 227 244 29 chr3 11800097 11800668 -206236490 + SATR1 Satellite Satellite 1 693 -10 261 214 48 71 chr3 11800685 11800769 -206236389 - SATR1 Satellite Satellite -47 423 342 1117 234 209 45 chr3 11800797 11801713 -206235445 - SATR1 Satellite Satellite -7 1066 1 933 223 256 48 chr3 11801737 11802405 -206234753 - SATR1 Satellite Satellite -1 807 1 740 240 318 3 chr3 11802434 11802780 -206234378 - SATR1 Satellite Satellite -4 466 12 1195 220 227 26 chr3 11802811 11805033 -206232125 - SATR1 Satellite Satellite -2 2667 1 1046 219 261 10 chr3 11805070 11806195 -206230963 - SATR1 Satellite Satellite -99 1407 1 513 268 298 7 chr3 11806224 11806496 -206230662 - SATR1 Satellite Satellite -95 375 25 466 198 129 106 chr3 11806570 11806787 -206230371 - SATR1 Satellite Satellite -106 364 143 595 262 64 0 chr3 11807100 11807272 -206229886 - LTR16C LTR ERVL -36 455 273 271 346 13 0 chr3 11807367 11807445 -206229713 + MIR SINE MIR 154 232 -30 210 260 13 39 chr3 11808140 11808217 -206228941 - MIR SINE MIR -168 94 20 246 236 37 143 chr3 11808273 11808434 -206228724 - MIR SINE MIR -10 252 109 360 353 29 0 chr3 11808541 11808677 -206228481 - L1ME4a LINE L1 0 6121 5982 462 271 188 1 chr3 11808677 11808911 -206228247 + Charlie8 DNA MER1_type 1 265 -2152 317 287 221 11 chr3 11808988 11809169 -206227989 - L1ME4a LINE L1 -134 5987 5769 205 367 25 17 chr3 11810081 11810201 -206226957 - MIR3 SINE MIR -84 124 4 221 282 27 64 chr3 11810406 11810516 -206226642 + MIR SINE MIR 91 196 -66 217 309 85 32 chr3 11811005 11811099 -206226059 - MIR SINE MIR -74 134 36 349 261 148 61 chr3 11812401 11812945 -206224213 + L1ME4a LINE L1 5303 5885 -236 210 289 0 19 chr3 11813113 11813165 -206223993 + C-rich Low_complexity Low_complexity 5 55 0 284 320 45 22 chr3 11813563 11813741 -206223417 - MIR SINE MIR -60 202 21 879 199 35 0 chr3 11813873 11814044 -206223114 - MER5A DNA MER1_type -6 183 7 215 260 0 0 chr3 11814750 11814800 -206222358 - L2 LINE L2 -3 3310 3261 303 302 65 14 chr3 11815446 11815585 -206221573 + MIR SINE MIR 20 165 -97 995 251 39 4 chr3 11815606 11815837 -206221321 + MIR SINE MIR 21 259 -3 1227 215 113 26 chr3 11816298 11816642 -206220516 + MLT1A2 LTR MaLR 1 374 0 229 211 84 42 chr3 11817120 11817191 -206219967 + MER5A DNA MER1_type 40 113 -76 906 195 123 0 chr3 11818029 11818224 -206218934 - MER20 DNA MER1_type 0 219 1 1085 249 127 44 chr3 11818433 11818883 -206218275 - LTR16C LTR ERVL -2 489 3 326 281 42 0 chr3 11819309 11819405 -206217753 + MIR SINE MIR 64 163 -99 232 324 0 0 chr3 11820034 11820105 -206217053 + MIR SINE MIR 54 124 -138 1264 195 23 36 chr3 11820284 11820587 -206216571 + AluJo SINE Alu 1 299 -13 30516 35 14 1 chr3 11820589 11826644 -206210514 + L1PA3 LINE L1 1 6188 0 278 67 156 0 chr3 11826660 11826705 -206210453 + MSTA LTR MaLR 3 54 -374 2183 121 81 14 chr3 11826750 11827121 -206210037 + MSTA LTR MaLR 31 426 -2 601 231 77 24 chr3 11827146 11827315 -206209843 - MIR SINE MIR -36 226 49 272 320 0 0 chr3 11827838 11827913 -206209245 - L2 LINE L2 0 3313 3239 1783 158 0 73 chr3 11828430 11828747 -206208411 + AluJb SINE Alu 1 294 -18 577 207 82 15 chr3 11829759 11829894 -206207264 - MER5B DNA MER1_type 0 178 35 2457 84 0 22 chr3 11830059 11830370 -206206788 - AluSx SINE Alu -8 304 1 275 239 294 9 chr3 11830560 11830669 -206206489 - MIR SINE MIR -105 157 18 991 178 213 0 chr3 11831097 11831327 -206205831 + MLT1D LTR MaLR 227 505 0 1346 178 157 78 chr3 11831352 11831568 -206205590 - MLT1C LTR MaLR 0 467 269 405 39 0 0 chr3 11831568 11831619 -206205539 + (TG)n Simple_repeat Simple_repeat 2 52 0 1346 178 157 78 chr3 11831619 11831835 -206205323 - MLT1C LTR MaLR -198 269 1 300 301 140 0 chr3 11832181 11832317 -206204841 + L2 LINE L2 3109 3263 -9 815 174 5 102 chr3 11833325 11833521 -206203637 + MER58A DNA MER1_type 4 180 -44 194 400 67 0 chr3 11833736 11833826 -206203332 - L3 LINE CR1 -111 1466 1371 750 281 139 29 chr3 11833910 11834255 -206202903 - L3 LINE CR1 -237 1340 958 215 288 61 0 chr3 11834305 11834371 -206202787 - MIR SINE MIR -63 145 76 238 247 233 14 chr3 11834411 11834484 -206202674 + MIR3 SINE MIR 111 199 -9 900 255 152 14 chr3 11835558 11835948 -206201210 - MLT1G3 LTR MaLR 0 530 75 417 294 83 73 chr3 11836409 11836736 -206200422 + MLT1J LTR MaLR 156 485 -26 273 378 60 4 chr3 11836780 11837013 -206200145 + L2 LINE L2 2637 2882 -432 229 276 56 140 chr3 11837090 11837340 -206199818 + L2 LINE L2 2992 3220 -52 455 186 41 0 chr3 11837869 11837966 -206199192 - MIR SINE MIR -58 150 50 1820 152 28 0 chr3 11839232 11839522 -206197636 - AluJb SINE Alu -14 298 1 223 308 44 11 chr3 11839547 11839638 -206197520 + MER5A DNA MER1_type 7 100 -89 1476 203 51 8 chr3 11839656 11840026 -206197132 - MER3 DNA MER1_type 0 2624 2239 357 188 208 0 chr3 11840027 11840123 -206197035 - MER3 DNA MER1_type -41 168 53 502 238 38 31 chr3 11840266 11840426 -206196732 + L2 LINE L2 2938 3098 -174 241 330 71 4 chr3 11840642 11840775 -206196383 + MIR SINE MIR 16 151 -63 203 279 0 16 chr3 11840843 11840904 -206196254 + MIR SINE MIR 178 237 -25 232 286 0 0 chr3 11841591 11841647 -206195511 + GA-rich Low_complexity Low_complexity 5 60 0 355 300 25 33 chr3 11841754 11841874 -206195284 + MIR3 SINE MIR 7 125 -83 276 313 21 0 chr3 11842176 11842272 -206194886 - L2 LINE L2 -3 3269 3172 583 51 59 8 chr3 11842483 11842601 -206194557 + CT-rich Low_complexity Low_complexity 2 125 0 269 256 24 12 chr3 11843250 11843332 -206193826 - MER117 DNA MER1_type 0 197 115 257 284 0 15 chr3 11843730 11843797 -206193361 - MER5A DNA MER1_type -37 152 87 2153 121 0 20 chr3 11843842 11844147 -206193011 + AluSq SINE Alu 1 299 -14 737 208 72 47 chr3 11844252 11844521 -206192637 - MLT1F1 LTR MaLR 0 567 294 530 231 42 17 chr3 11844658 11844858 -206192300 - MLT1H LTR MaLR -321 234 18 856 190 183 11 chr3 11845657 11845931 -206191227 - MER5C DNA MER1_type 0 324 4 203 360 12 12 chr3 11846065 11846151 -206191007 - MIR SINE MIR -71 137 52 210 143 0 0 chr3 11846871 11846906 -206190252 + (GAA)n Simple_repeat Simple_repeat 2 36 0 479 202 9 0 chr3 11847234 11847348 -206189810 + (TGGA)n Simple_repeat Simple_repeat 1 115 0 2743 116 47 2 chr3 11847351 11847758 -206189400 - MSTB LTR MaLR -1 425 1 1562 80 0 80 chr3 11848789 11849014 -206188144 - AluY SINE Alu -9 302 96 305 307 53 9 chr3 11849039 11849153 -206188005 - MIR SINE MIR -71 191 73 226 196 43 0 chr3 11849319 11849365 -206187793 + MIR SINE MIR 64 111 -97 529 250 12 50 chr3 11849398 11849503 -206187655 + MER5A DNA MER1_type 17 116 -73 2148 175 61 19 chr3 11849503 11849914 -206187244 + MSTA LTR MaLR 1 428 0 529 250 12 50 chr3 11849914 11849968 -206187190 + MER5A DNA MER1_type 116 170 -19 198 0 0 0 chr3 11851311 11851333 -206185825 + (CA)n Simple_repeat Simple_repeat 1 22 0 438 189 148 8 chr3 11851438 11851560 -206185598 - MER103 DNA DNA -19 147 9 181 345 0 83 chr3 11851686 11851770 -206185388 + MIR3 SINE MIR 3 79 -129 294 293 143 34 chr3 11852055 11852202 -206184956 - MIR3 SINE MIR -45 163 1 306 311 95 20 chr3 11852630 11852778 -206184380 - MER5A DNA MER1_type -29 160 2 181 292 69 14 chr3 11853852 11853924 -206183234 - MER5A DNA MER1_type -105 84 9 5369 177 39 3 chr3 11854937 11856747 -206180411 - L1MB7 LINE L1 -54 6130 4239 267 31 0 0 chr3 11856747 11856779 -206180379 + (TG)n Simple_repeat Simple_repeat 1 32 0 5369 177 39 3 chr3 11856779 11856875 -206180283 - L1MB7 LINE L1 -1945 4239 4148 366 250 207 36 chr3 11858168 11858308 -206178850 + MIR SINE MIR 98 261 -1 285 359 65 5 chr3 11858372 11858556 -206178602 - L2 LINE L2 -174 3098 2904 652 169 214 0 chr3 11859191 11859345 -206177813 + MER5A DNA MER1_type 2 188 -1 192 312 56 69 chr3 11860369 11860600 -206176558 - L2 LINE L2 -366 2948 2721 395 208 0 0 chr3 11860841 11860913 -206176245 - MIR SINE MIR -62 146 75 312 275 20 7 chr3 11861174 11861375 -206175783 + LTR16A LTR ERVL 51 283 -167 327 270 131 64 chr3 11861547 11861794 -206175364 + MIR SINE MIR 1 262 0 24 32 0 0 chr3 11861802 11861833 -206175325 + AT_rich Low_complexity Low_complexity 1 31 0 350 216 9 95 chr3 11863472 11863588 -206173570 + MER5A DNA MER1_type 4 109 -80 207 308 39 39 chr3 11863704 11863808 -206173350 + L2 LINE L2 2959 3062 -210 468 256 40 8 chr3 11865098 11865223 -206171935 - MER91C DNA MER1_type -3 137 9 955 200 4 74 chr3 11865447 11865677 -206171481 + MER20 DNA MER1_type 1 214 -5 511 291 113 5 chr3 11866050 11866263 -206170895 + MIR SINE MIR 27 262 0 199 291 0 38 chr3 11866335 11866414 -206170744 - MIR SINE MIR -113 149 74 217 294 0 0 chr3 11867601 11867652 -206169506 - L2 LINE L2 -71 3201 3151 338 289 29 10 chr3 11867791 11867895 -206169263 - MIR SINE MIR -72 190 85 203 184 0 0 chr3 11868383 11868421 -206168737 + (TTA)n Simple_repeat Simple_repeat 3 40 0 228 317 91 33 chr3 11869950 11870072 -206167086 - MIR SINE MIR -57 151 22 325 197 13 0 chr3 11870262 11870338 -206166820 + MIR SINE MIR 63 139 -69 439 309 42 24 chr3 11871489 11871657 -206165501 - MIR SINE MIR -36 226 56 21 0 0 0 chr3 11872634 11872655 -206164503 + GC_rich Low_complexity Low_complexity 1 21 0 333 262 47 121 chr3 11873633 11873931 -206163227 + L1M2 LINE L1 755 1030 -5819 481 208 42 33 chr3 11875071 11875191 -206161967 + MIR3 SINE MIR 86 206 -2 651 75 0 0 chr3 11875713 11875793 -206161365 - MADE1 DNA Mariner 0 80 1 1006 207 122 44 chr3 11876040 11876359 -206160799 - MER2 DNA MER2_type 0 344 1 228 128 0 64 chr3 11876559 11876606 -206160552 - MER113 DNA MER1_type? -465 56 13 2030 167 51 20 chr3 11876805 11877195 -206159963 - MLT2D LTR ERVL -12 402 1 2906 78 32 0 chr3 11877257 11877631 -206159527 - L1PA10 LINE L1 0 6168 5783 315 195 12 49 chr3 11877632 11877714 -206159444 - L1MC4 LINE L1 -1350 6692 6614 348 96 30 0 chr3 11877715 11877853 -206159305 + (TA)n Simple_repeat Simple_repeat 1 142 0 3638 81 8 0 chr3 11877862 11878345 -206158813 - L1P4 LINE L1 -392 5776 5290 202 121 30 0 chr3 11879496 11879529 -206157629 + L2 LINE L2 3028 3061 -252 463 222 19 9 chr3 11880204 11880312 -206156846 - MIR SINE MIR -80 182 74 222 284 318 5 chr3 11880311 11880522 -206156636 - L2 LINE L2 -420 2894 2618 * 2206 104 0 3 chr3 11880527 11880815 -206156343 + AluSc SINE Alu 7 293 -16 195 250 29 59 chr3 11880891 11880959 -206156199 - MIR SINE MIR -106 102 37 558 204 53 18 chr3 11881615 11881775 -206155383 + MIR3 SINE MIR 44 208 0 256 261 29 0 chr3 11881831 11881900 -206155258 + L2 LINE L2 3243 3313 0 301 260 24 81 chr3 11882023 11882146 -206155012 + L1MC/D LINE L1 5522 5637 -2171 274 235 304 0 chr3 11883462 11883564 -206153594 - MIR3 SINE MIR -65 143 11 266 302 43 52 chr3 11883807 11883923 -206153235 + MIR SINE MIR 35 149 -113 939 229 70 180 chr3 11883949 11884604 -206152554 - MLT1G1 LTR MaLR -2 593 11 197 256 0 23 chr3 11884650 11884693 -206152465 + MIR SINE MIR 220 261 -1 2339 229 30 33 chr3 11885120 11885761 -206151397 + L1MA9 LINE L1 2379 3017 -3129 192 185 19 37 chr3 11885770 11885878 -206151280 + (TA)n Simple_repeat Simple_repeat 1 106 0 317 218 81 35 chr3 11885880 11885967 -206151191 - L1MC4 LINE L1 -1336 6706 6616 6129 166 56 14 chr3 11885983 11887066 -206150092 + L1MA9 LINE L1 4127 5163 -1149 333 0 0 0 chr3 11887066 11887103 -206150055 + (CA)n Simple_repeat Simple_repeat 2 38 0 6129 166 56 14 chr3 11887103 11888061 -206149097 + L1MA9 LINE L1 5163 6302 -10 292 192 151 0 chr3 11888097 11888170 -206148988 - MER45 DNA AcHobo -94 84 1 254 330 146 32 chr3 11888178 11888487 -206148671 + L2 LINE L2 2475 2818 -496 209 288 45 30 chr3 11888706 11888772 -206148386 + L2 LINE L2 3167 3233 -39 303 259 0 56 chr3 11889860 11889968 -206147190 - MIR SINE MIR -51 211 110 482 303 142 0 chr3 11889999 11890161 -206146997 - MIR SINE MIR -15 247 63 1084 94 0 50 chr3 11890161 11890320 -206146838 + AluSq/x SINE Alu 1 151 -162 536 67 0 53 chr3 11890324 11890399 -206146759 - AluSq/x SINE Alu -180 133 63 1409 170 111 23 chr3 11890400 11890706 -206146452 + MLT1D LTR MaLR 127 459 -46 13474 182 47 22 chr3 11890761 11892800 -206144358 - L1MB7 LINE L1 -120 6064 4076 254 95 24 0 chr3 11892800 11892842 -206144316 + (TG)n Simple_repeat Simple_repeat 2 44 0 13474 182 47 22 chr3 11892842 11894418 -206142740 - L1MB7 LINE L1 -2108 4076 2348 1416 225 14 0 chr3 11894418 11894703 -206142455 + AluJo SINE Alu 1 289 -23 13474 182 47 22 chr3 11894703 11894859 -206142299 - L1MB7 LINE L1 -3836 2348 2197 468 207 18 9 chr3 11894862 11894973 -206142185 - Charlie1a DNA MER1_type -1299 156 45 225 300 45 18 chr3 11895215 11895325 -206141833 - MLT1H LTR MaLR -405 144 32 216 259 129 0 chr3 11895356 11895441 -206141717 - L2 LINE L2 -656 2658 2563 2225 110 3 0 chr3 11895792 11896077 -206141081 + AluSx SINE Alu 1 289 -23 198 0 0 0 chr3 11896077 11896099 -206141059 + (TTTAA)n Simple_repeat Simple_repeat 1 22 0 2225 110 3 0 chr3 11896099 11896113 -206141045 + AluSx SINE Alu 289 301 -11 227 111 0 22 chr3 11896282 11896327 -206140831 + (GGAA)n Simple_repeat Simple_repeat 2 45 0 262 247 305 26 chr3 11896494 11896648 -206140510 + MIR SINE MIR 56 252 -10 203 306 14 0 chr3 11897325 11897397 -206139761 + MIR SINE MIR 58 130 -78 2296 82 16 7 chr3 11898144 11898448 -206138710 + AluY SINE Alu 1 307 -4 526 253 114 19 chr3 11898644 11898802 -206138356 + MER5A DNA MER1_type 9 181 -8 482 321 173 23 chr3 11898866 11899360 -206137798 - L2 LINE L2 -20 3293 2714 283 270 116 7 chr3 11899377 11899543 -206137615 - MLT1G LTR MaLR -45 545 322 1078 284 129 41 chr3 11899641 11900331 -206136827 - L2 LINE L2 -593 2721 1971 536 266 199 23 chr3 11900344 11900686 -206136472 - L2 LINE L2 -1612 1702 1301 3885 98 17 42 chr3 11900862 11901097 -206136061 + L1PB1 LINE L1 5576 5815 -336 366 23 0 0 chr3 11901097 11901140 -206136018 + (CA)n Simple_repeat Simple_repeat 2 44 0 3885 98 17 42 chr3 11901140 11901495 -206135663 + L1PB1 LINE L1 5815 6151 0 435 314 78 49 chr3 11901859 11902104 -206135054 + MIR SINE MIR 11 262 0 2236 110 3 0 chr3 11902202 11902501 -206134657 - AluSg SINE Alu -10 300 1 618 193 36 153 chr3 11902551 11902800 -206134358 + L1MC5 LINE L1 6928 7147 -814 267 289 111 22 chr3 11903313 11903448 -206133710 + MER117 DNA MER1_type 1 147 -50 408 20 0 0 chr3 11903453 11903502 -206133656 + (TG)n Simple_repeat Simple_repeat 1 49 0 2361 64 10 7 chr3 11903708 11904005 -206133153 + AluY SINE Alu 1 298 -13 270 0 0 0 chr3 11904103 11904133 -206133025 + (TG)n Simple_repeat Simple_repeat 1 30 0 673 323 16 22 chr3 11904169 11904485 -206132673 + L1MC1 LINE L1 95 408 -6015 743 261 124 8 chr3 11904644 11904878 -206132280 + MER21B LTR ERV1 17 277 -586 2434 272 58 51 chr3 11904911 11906411 -206130747 + L1MC1 LINE L1 1128 2872 -4250 315 0 0 0 chr3 11906411 11906446 -206130712 + (CA)n Simple_repeat Simple_repeat 2 36 0 2434 272 58 51 chr3 11906446 11906545 -206130613 + L1MC1 LINE L1 2872 2969 -4153 402 21 0 0 chr3 11906551 11906598 -206130560 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 402 207 0 58 chr3 11906615 11906702 -206130456 + L1MC1 LINE L1 4570 4651 -2290 2498 206 62 9 chr3 11906703 11907233 -206129925 - MLT1F1 LTR MaLR 0 567 10 958 183 65 5 chr3 11907254 11907440 -206129718 + MER20 DNA MER1_type 1 197 -22 240 125 42 0 chr3 11907440 11907488 -206129670 + L1MC1 LINE L1 4691 4740 -2201 881 9 37 0 chr3 11907508 11907616 -206129542 - L1P LINE L1 -823 5323 5212 6134 160 29 20 chr3 11907872 11909494 -206127664 + L1MC1 LINE L1 5492 7128 0 3037 176 86 96 chr3 11909510 11910881 -206126277 + L1MB8 LINE L1 4754 6967 -6 2144 241 23 18 chr3 11910885 11911488 -206125670 + L1ME2 LINE L1 4236 4841 -1305 1164 236 25 55 chr3 11911789 11911979 -206125179 + L1ME2 LINE L1 5814 5989 -175 1813 107 7 77 chr3 11911979 11912278 -206124880 + AluSx SINE Alu 15 292 -20 1164 236 25 55 chr3 11912278 11912448 -206124710 + L1ME2 LINE L1 5989 6163 -1 801 212 22 36 chr3 11912469 11912691 -206124467 + L1ME3 LINE L1 5944 6162 0 294 276 97 37 chr3 11914305 11914439 -206122719 + MIR SINE MIR 54 195 -67 1841 158 20 3 chr3 11914767 11915071 -206122087 + AluSx SINE Alu 1 309 -3 435 224 245 14 chr3 11915204 11915351 -206121807 + MIR SINE MIR 12 192 -70 305 264 46 0 chr3 11915682 11915769 -206121389 + MIR SINE MIR 92 182 -80 2475 59 7 3 chr3 11917600 11917904 -206119254 + AluY SINE Alu 1 305 -6 248 301 76 60 chr3 11918648 11918897 -206118261 + L2 LINE L2 2151 2403 -911 210 303 256 5 chr3 11918941 11919136 -206118022 + L2 LINE L2 2514 2757 -557 256 278 140 78 chr3 11919190 11919396 -206117762 + L2 LINE L2 2826 3018 -254 1662 226 110 26 chr3 11919396 11919861 -206117297 + MLT1D LTR MaLR 2 505 0 256 278 140 78 chr3 11919861 11920075 -206117083 + L2 LINE L2 3018 3272 0 257 287 11 11 chr3 11920275 11920362 -206116796 - MER5A DNA MER1_type -14 175 89 258 301 257 10 chr3 11921739 11921945 -206115213 + MIR SINE MIR 6 262 0 334 331 0 14 chr3 11922313 11922461 -206114697 - MIR3 SINE MIR -39 169 24 396 218 160 58 chr3 11922684 11922890 -206114268 + L2 LINE L2 3082 3308 -5 343 311 75 66 chr3 11923879 11924213 -206112945 + MLT1H-int LTR MaLR 1011 1347 -24 729 232 221 79 chr3 11924251 11924421 -206112737 + MLT1H LTR MaLR 18 163 -386 1569 182 67 12 chr3 11924421 11924767 -206112391 - MLT1A1 LTR MaLR 0 365 1 729 232 221 79 chr3 11924767 11925062 -206112096 + MLT1H LTR MaLR 163 549 0 627 291 13 0 chr3 11925392 11925543 -206111615 - MIR3 SINE MIR -48 160 8 183 272 65 33 chr3 11925747 11925839 -206111319 + L2 LINE L2 2944 3038 -234 237 345 90 23 chr3 11925904 11926081 -206111077 + L2 LINE L2 2701 2889 -425 275 250 12 12 chr3 11926341 11926421 -206110737 + L2 LINE L2 3193 3272 0 189 195 0 0 chr3 11926479 11926520 -206110638 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 214 268 56 14 chr3 11927183 11927254 -206109904 - L2 LINE L2 -8 3264 3191 1948 266 96 54 chr3 11927396 11928363 -206108795 + L1ME2 LINE L1 3879 4804 -1342 975 256 96 37 chr3 11928363 11928855 -206108303 + LTR33 LTR ERVL 1 521 0 1948 266 96 54 chr3 11928855 11929195 -206107963 + L1ME2 LINE L1 4804 5128 -1018 904 143 52 81 chr3 11929195 11929245 -206107913 - MER3 DNA MER1_type -4 205 155 2043 127 3 7 chr3 11929245 11929537 -206107621 + AluSq SINE Alu 1 291 -22 904 143 52 81 chr3 11929537 11929696 -206107462 - MER3 DNA MER1_type -54 155 2 1948 266 96 54 chr3 11929696 11929754 -206107404 + L1ME2 LINE L1 5128 5182 -964 2324 177 115 13 chr3 11929754 11930222 -206106936 + MLT2B1 LTR ERVL 5 520 0 1948 266 96 54 chr3 11930222 11930276 -206106882 + L1ME2 LINE L1 5182 5360 -786 524 288 139 24 chr3 11930382 11930799 -206106359 + L1ME2 LINE L1 5487 5951 -213 892 66 0 25 chr3 11931017 11931139 -206106019 - AluY SINE Alu 0 311 193 35 0 0 0 chr3 11931382 11931417 -206105741 + AT_rich Low_complexity Low_complexity 1 35 0 720 232 110 57 chr3 11931645 11931999 -206105159 + L1ME3A LINE L1 3825 4197 -1949 772 167 0 0 chr3 11932011 11932143 -206105015 + AluSq/x SINE Alu 2 133 -180 841 163 105 77 chr3 11932209 11932418 -206104740 + MER20 DNA MER1_type 4 218 -1 2170 137 8 42 chr3 11932454 11932833 -206104325 + MER47A DNA MER2_type 1 366 0 3189 230 75 18 chr3 11932833 11933939 -206103219 + L1ME3A LINE L1 5003 6170 0 948 271 165 12 chr3 11933936 11934589 -206102569 + L1ME LINE L1 3095 3847 -2299 * 1695 247 125 72 chr3 11934633 11934784 -206102374 + L1ME LINE L1 4052 4194 -1952 1738 158 29 35 chr3 11934784 11935095 -206102063 + AluSx SINE Alu 1 309 -3 1695 247 125 72 chr3 11935095 11935357 -206101801 + L1ME LINE L1 4194 4441 -1705 1526 159 46 32 chr3 11935357 11935640 -206101518 + AluJb SINE Alu 1 287 -25 213 39 0 0 chr3 11935642 11935668 -206101490 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1695 247 125 72 chr3 11935668 11935811 -206101347 + L1ME LINE L1 4441 4575 -1571 417 39 0 0 chr3 11935811 11935862 -206101296 + (TG)n Simple_repeat Simple_repeat 1 51 0 1695 247 125 72 chr3 11935862 11936238 -206100920 + L1ME LINE L1 4575 4930 -1216 914 150 56 94 chr3 11936238 11936451 -206100707 - MER3 DNA MER1_type 0 209 5 1695 247 125 72 chr3 11936451 11936463 -206100695 + L1ME LINE L1 4930 4940 -1206 1109 176 88 0 chr3 11936463 11936667 -206100491 + MER58A DNA MER1_type 1 222 -2 1695 247 125 72 chr3 11936667 11936997 -206100161 + L1ME LINE L1 4940 5400 -746 4998 173 44 33 chr3 11936997 11937210 -206099948 + L1MC2 LINE L1 4552 4761 -1583 1741 163 61 0 chr3 11937210 11937504 -206099654 + AluJb SINE Alu 1 312 0 4998 173 44 33 chr3 11937504 11939015 -206098143 + L1MC2 LINE L1 4761 6289 -55 2165 101 37 17 chr3 11939016 11939314 -206097844 - AluSx SINE Alu -7 305 2 872 271 58 27 chr3 11939328 11939656 -206097502 + L1ME LINE L1 5387 5724 -446 217 254 51 0 chr3 11939665 11939724 -206097434 + MIR SINE MIR 128 189 -73 348 280 128 45 chr3 11939853 11940253 -206096905 - LTR67 LTR ERVL -24 533 101 1369 139 42 0 chr3 11941169 11941384 -206095774 - AluJb SINE Alu -4 308 85 228 311 39 19 chr3 11941516 11941619 -206095539 - MIR SINE MIR -74 188 84 988 258 135 43 chr3 11941631 11941952 -206095206 + MLT1H LTR MaLR 1 384 -165 2736 196 29 7 chr3 11941952 11942498 -206094660 - MER74A LTR ERVL 0 558 1 988 258 135 43 chr3 11942498 11942665 -206094493 + MLT1H LTR MaLR 384 534 -15 1755 151 49 3 chr3 11943108 11943392 -206093766 - AluJo SINE Alu -15 297 1 362 202 109 59 chr3 11943598 11943717 -206093441 + MIR SINE MIR 43 167 -41 487 252 8 8 chr3 11943846 11943969 -206093189 - MIR SINE MIR -108 154 32 2253 209 122 0 chr3 11944832 11945334 -206091824 - MER119 DNA MER1_type -18 565 3 457 228 198 25 chr3 11946807 11946969 -206090189 + MIR SINE MIR 32 221 -41 222 238 112 31 chr3 11947086 11947246 -206089912 - MER5A DNA MER1_type 0 189 1 2179 113 65 14 chr3 11947248 11947602 -206089556 + THE1C LTR MaLR 1 372 -3 388 291 0 27 chr3 11947682 11947830 -206089328 + MER5B DNA MER1_type 1 144 -34 241 233 17 0 chr3 11947833 11947893 -206089265 - MER5B DNA MER1_type -111 67 7 579 265 7 7 chr3 11948202 11948338 -206088820 + L2 LINE L2 3178 3313 0 1224 180 38 119 chr3 11949265 11949659 -206087499 + MLT1A1 LTR MaLR 4 365 0 181 383 49 0 chr3 11949740 11949821 -206087337 + L2 LINE L2 3138 3222 -50 659 281 107 8 chr3 11950622 11950875 -206086283 - MLT1L LTR MaLR -240 375 98 21 36 0 0 chr3 11951057 11951085 -206086073 + AT_rich Low_complexity Low_complexity 1 28 0 1077 251 109 29 chr3 11952081 11952495 -206084663 - MLT1L LTR MaLR -9 606 160 181 329 80 36 chr3 11952897 11953034 -206084124 + L2 LINE L2 3121 3263 -9 1233 207 68 54 chr3 11953641 11953993 -206083165 - MER31B LTR ERV1 0 466 110 389 95 0 0 chr3 11953996 11954059 -206083099 - L1MA7 LINE L1 0 6291 6229 1050 191 14 9 chr3 11954060 11954275 -206082883 - AluJo SINE Alu -10 302 87 2729 138 0 45 chr3 11954275 11954395 -206082763 - L1MA7 LINE L1 -51 6240 6116 1620 146 8 19 chr3 11954395 11954656 -206082502 - AluJo SINE Alu -13 299 42 2729 138 0 45 chr3 11954656 11955026 -206082132 - L1MA7 LINE L1 -175 6116 5772 300 111 0 0 chr3 11955026 11955071 -206082087 + (TTCC)n Simple_repeat Simple_repeat 2 46 0 2194 110 20 0 chr3 11955073 11955374 -206081784 - AluSg SINE Alu -3 307 1 468 104 0 39 chr3 11955425 11955502 -206081656 - MER31B LTR ERV1 -392 74 1 569 262 17 29 chr3 11955657 11955829 -206081329 + MIR SINE MIR 20 189 -73 311 333 0 19 chr3 11956053 11956158 -206081000 + MER5B DNA MER1_type 31 133 -45 193 294 44 44 chr3 11956530 11956666 -206080492 - MIR3 SINE MIR -17 191 56 1622 271 96 7 chr3 11957588 11958130 -206079028 + MLT1E LTR MaLR 1 590 -3 330 267 40 0 chr3 11958250 11958351 -206078807 - MIR SINE MIR -119 143 39 456 243 0 0 chr3 11958548 11958655 -206078503 - MLT2F LTR ERVL -10 653 547 495 190 0 30 chr3 11958656 11958756 -206078402 + FLAM_A SINE Alu 40 136 -6 976 268 57 69 chr3 11958818 11959310 -206077848 - MLT2F LTR ERVL -161 502 17 472 285 74 53 chr3 11959653 11959937 -206077221 - L3 LINE CR1 -37 1540 1251 331 277 0 0 chr3 11959997 11960080 -206077078 - L1MD3 LINE L1 -787 7208 7126 234 278 287 0 chr3 11960080 11960195 -206076963 + MIR SINE MIR 115 262 0 402 159 0 0 chr3 11960422 11960485 -206076673 + FLAM_A SINE Alu 63 125 -8 25797 153 16 9 chr3 11960860 11963306 -206073852 + ERVL-B2 LTR ERVL 1627 4115 -1649 2259 117 0 10 chr3 11963306 11963613 -206073545 - AluSx SINE Alu -8 304 1 25797 153 16 9 chr3 11963613 11965272 -206071886 + ERVL-B2 LTR ERVL 4115 5761 -3 1955 189 109 22 chr3 11965274 11965686 -206071472 + MLT2B2 LTR ERVL 7 454 -61 437 97 14 0 chr3 11965689 11965761 -206071397 + (TCTA)n Simple_repeat Simple_repeat 1 73 0 333 119 0 90 chr3 11965761 11965828 -206071330 + MLT2B3 LTR ERVL 458 552 -2 2366 251 29 40 chr3 11965864 11966580 -206070578 + L1MEc LINE L1 110 817 -5579 2112 106 0 0 chr3 11966583 11966856 -206070302 + AluSg SINE Alu 1 273 -37 645 311 34 8 chr3 11968616 11968854 -206068304 + LTR16B LTR ERVL 221 464 0 2205 117 7 7 chr3 11969838 11970147 -206067011 - AluSx SINE Alu -3 309 1 747 144 0 0 chr3 11970315 11970440 -206066718 + (TG)n Simple_repeat Simple_repeat 2 126 0 1919 205 82 23 chr3 11970817 11971291 -206065867 + MLT1D LTR MaLR 4 505 0 670 185 123 0 chr3 11971337 11971467 -206065691 + Tigger5 DNA MER2_type 2178 2323 0 377 327 117 30 chr3 11971551 11971918 -206065240 - L3 LINE CR1 -5 1572 1174 236 254 0 0 chr3 11972068 11972123 -206065035 + MIR3 SINE MIR 151 205 -3 693 278 134 35 chr3 11972504 11972625 -206064533 + L1MC4a LINE L1 5552 5660 -461 333 62 0 0 chr3 11972625 11972673 -206064485 + (CA)n Simple_repeat Simple_repeat 1 48 0 693 278 134 35 chr3 11972673 11973106 -206064052 + L1MC4a LINE L1 5660 5933 -188 200 342 40 13 chr3 11973251 11973327 -206063831 - MIR SINE MIR -63 145 68 337 281 11 0 chr3 11973404 11973493 -206063665 + MIR3 SINE MIR 83 172 -36 348 303 38 15 chr3 11974321 11974453 -206062705 - L2 LINE L2 -4 3268 3134 1207 297 55 27 chr3 11974480 11975060 -206062098 - L2 LINE L2 -5 3308 2746 253 0 0 0 chr3 11975060 11975088 -206062070 + (TTTTC)n Simple_repeat Simple_repeat 2 155 0 2339 46 0 3 chr3 11975088 11975372 -206061786 - AluY SINE Alu -28 283 1 1207 297 55 27 chr3 11975372 11975625 -206061533 - L2 LINE L2 -566 2747 2454 1740 98 39 11 chr3 11975629 11975810 -206061348 + L1M3 LINE L1 5291 5484 -687 291 28 0 0 chr3 11975810 11975846 -206061312 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 1740 98 39 11 chr3 11975846 11975949 -206061209 + L1M3 LINE L1 5484 5583 -588 183 42 0 0 chr3 11976447 11976471 -206060687 + (TTG)n Simple_repeat Simple_repeat 2 25 0 598 207 106 28 chr3 11976628 11976807 -206060351 - L2 LINE L2 -864 2450 2258 535 302 60 30 chr3 11976845 11977176 -206059982 - L2 LINE L2 -938 2376 2036 322 222 146 58 chr3 11977181 11977488 -206059670 - L2 LINE L2 -2235 1079 738 977 184 0 0 chr3 11977488 11977656 -206059502 + FAM SINE Alu 1 168 -7 322 222 146 58 chr3 11977656 11977690 -206059468 - L2 LINE L2 -2576 738 708 327 253 35 11 chr3 11978248 11978335 -206058823 + MIR3 SINE MIR 114 202 -6 191 224 66 79 chr3 11978326 11978402 -206058756 - MIR3 SINE MIR -40 168 94 * 264 259 333 0 chr3 11979006 11979153 -206058005 + MIR SINE MIR 67 262 0 319 253 115 1 chr3 11979167 11979310 -206057848 - L1MCa LINE L1 -3986 2658 2508 1323 140 68 5 chr3 11980610 11980831 -206056327 - MER46A DNA MER2_type 0 236 2 401 293 48 5 chr3 11981147 11981335 -206055823 + L1ME LINE L1 5622 5817 -304 405 70 0 0 chr3 11981383 11981440 -206055718 + (TG)n Simple_repeat Simple_repeat 2 58 0 1210 172 57 102 chr3 11981622 11981976 -206055182 - MLT1A1 LTR MaLR -7 358 21 256 353 0 0 chr3 11982150 11982218 -206054940 + L2 LINE L2 3134 3201 -71 303 243 0 72 chr3 11982239 11982350 -206054808 + GA-rich Low_complexity Low_complexity 4 106 0 316 222 0 0 chr3 11983597 11983660 -206053498 - MER20 DNA MER1_type -3 216 154 1285 175 75 52 chr3 11983694 11984043 -206053115 + MLT1B LTR MaLR 34 390 0 469 171 55 75 chr3 11984048 11984194 -206052964 - MER20 DNA MER1_type -76 143 1 249 246 130 0 chr3 11984207 11984276 -206052882 + L2 LINE L2 3190 3267 -5 216 0 0 0 chr3 11985512 11985536 -206051622 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 2531 245 99 50 chr3 11986164 11987456 -206049702 + L1MCc LINE L1 17 1372 -5051 468 259 48 48 chr3 11987452 11987803 -206049355 + L1MCc LINE L1 1583 1933 -5008 * 2627 222 27 38 chr3 11987809 11988467 -206048691 - L1MCa LINE L1 -5545 997 347 1484 214 16 40 chr3 11988472 11988850 -206048308 - L1MCa LINE L1 -6137 405 37 5299 147 13 16 chr3 11989986 11990912 -206046246 - MER49 LTR ERV1 0 923 1 332 114 43 57 chr3 11991024 11991094 -206046064 - L2 LINE L2 0 3313 3245 189 331 38 50 chr3 11991103 11991263 -206045895 - L2 LINE L2 -194 3078 2921 673 233 82 0 chr3 11991580 11991726 -206045432 + MER5A DNA MER1_type 31 188 -1 292 314 20 33 chr3 11991731 11991884 -206045274 - L2 LINE L2 -798 2516 2366 187 277 0 21 chr3 11991915 11991962 -206045196 - MIR SINE MIR -63 145 100 755 281 25 0 chr3 11992025 11992221 -206044937 - L1M4 LINE L1 -5995 547 347 1232 244 48 53 chr3 11992237 11992742 -206044416 + MER74B LTR ERVL 76 577 -45 563 301 7 13 chr3 11993129 11993282 -206043876 + MIR3 SINE MIR 36 187 -21 597 229 117 32 chr3 11993674 11993862 -206043296 + MIR SINE MIR 1 204 -58 674 335 102 18 chr3 11993907 11994342 -206042816 - L2 LINE L2 -109 3163 2682 1295 121 157 0 chr3 11994355 11994603 -206042555 + MER7A DNA MER2_type 62 346 0 358 223 30 49 chr3 11994948 11995080 -206042078 + L1ME1 LINE L1 5887 6023 -141 407 205 116 0 chr3 11995391 11995503 -206041655 - MER106B DNA MER1_type -3 1056 932 242 29 29 0 chr3 11995532 11995567 -206041591 + (TA)n Simple_repeat Simple_repeat 2 37 0 180 314 0 0 chr3 11996100 11996170 -206040988 + L2 LINE L2 719 788 -2526 644 317 45 18 chr3 11997295 11997519 -206039639 + MIR SINE MIR 27 256 -6 1854 153 26 19 chr3 11998155 11998463 -206038695 - AluJo SINE Alu -2 310 1 192 271 0 0 chr3 11998949 11998997 -206038161 - MIR SINE MIR -111 151 104 2230 98 20 0 chr3 11999229 11999524 -206037634 - AluSx SINE Alu -11 301 1 246 314 181 4 chr3 12000138 12000364 -206036794 - L1MC4a LINE L1 -1655 6153 5888 194 248 55 128 chr3 12000919 12001028 -206036130 + MIR SINE MIR 45 145 -117 2222 108 0 20 chr3 12002253 12002559 -206034599 + AluSx SINE Alu 1 300 -12 366 80 0 0 chr3 12002833 12002883 -206034275 + (TG)n Simple_repeat Simple_repeat 2 51 0 27 29 0 0 chr3 12003723 12003757 -206033401 + AT_rich Low_complexity Low_complexity 1 34 0 3150 196 59 16 chr3 12005555 12006298 -206030860 + L1MB4 LINE L1 5401 6175 -5 889 135 24 0 chr3 12007083 12007209 -206029949 + AluSq/x SINE Alu 5 133 -180 2099 140 10 7 chr3 12007214 12007521 -206029637 + AluSx SINE Alu 1 308 -4 1536 164 82 27 chr3 12008378 12008781 -206028377 + LTR37A LTR ERV1 1 425 -1 756 316 68 11 chr3 12010143 12010494 -206026664 + L2 LINE L2 1201 1571 -1743 760 237 42 19 chr3 12010536 12010751 -206026407 - MER112 DNA MER1_type -40 220 1 624 242 53 44 chr3 12010781 12011008 -206026150 + L2 LINE L2 1694 1922 -1392 345 272 37 31 chr3 12011074 12011236 -206025922 - L1MEc LINE L1 -6205 191 29 317 98 232 0 chr3 12011272 12011354 -206025804 + Charlie1 DNA MER1_type 2549 2649 -112 665 133 17 0 chr3 12011354 12011474 -206025684 - L1M4 LINE L1 -3246 2900 2779 825 212 187 15 chr3 12011483 12011809 -206025349 - L1MEc LINE L1 -5975 421 40 403 164 0 0 chr3 12011814 12011887 -206025271 + Charlie1 DNA MER1_type 2633 2705 -56 444 257 123 12 chr3 12011890 12012061 -206025097 + LTR1 LTR ERV1 28 217 -568 359 212 68 48 chr3 12012159 12012305 -206024853 + LTR28 LTR ERV1 407 555 -465 544 183 14 78 chr3 12012501 12012643 -206024515 + HUERS-P2 LTR ERV1 4 136 -2952 * 605 238 43 48 chr3 12012620 12012830 -206024328 + HUERS-P2 LTR ERV1 622 830 -2258 961 183 108 57 chr3 12012830 12013163 -206023995 + MLT1C LTR MaLR 116 465 -2 551 291 26 32 chr3 12013214 12013403 -206023755 + L2 LINE L2 3126 3313 0 251 314 177 65 chr3 12013440 12013984 -206023174 - L2 LINE L2 -185 3087 2488 396 299 0 12 chr3 12013984 12014151 -206023007 + HAL1 LINE L1 1450 1614 -893 1099 68 125 6 chr3 12014214 12014390 -206022768 + MER30 DNA MER1_type 1 197 -33 1160 267 84 58 chr3 12014405 12014790 -206022368 + HAL1 LINE L1 1673 2047 -460 2271 53 23 27 chr3 12014790 12015090 -206022068 + AluY SINE Alu 1 299 -12 1160 267 84 58 chr3 12015090 12015512 -206021646 + HAL1 LINE L1 2047 2501 -6 184 302 0 0 chr3 12016175 12016218 -206020940 - L2 LINE L2 -8 3305 3263 28 61 0 0 chr3 12017056 12017105 -206020053 + AT_rich Low_complexity Low_complexity 1 49 0 231 208 19 19 chr3 12017713 12017766 -206019392 - MIR3 SINE MIR -1 207 155 547 177 23 23 chr3 12018211 12018341 -206018817 + L1MD3 LINE L1 7856 7985 -10 518 190 52 40 chr3 12018808 12018982 -206018176 + L1MC5 LINE L1 7733 7908 -53 2309 70 3 35 chr3 12019304 12019617 -206017541 + AluY SINE Alu 1 303 -8 636 302 36 22 chr3 12019668 12020026 -206017132 + L1ME1 LINE L1 19 381 -6042 2558 59 0 0 chr3 12020027 12020330 -206016828 - AluY SINE Alu -8 303 1 808 276 14 14 chr3 12020669 12020890 -206016268 + L1MCc LINE L1 808 1028 -5395 2074 249 177 30 chr3 12021002 12022483 -206014675 + L1MCc LINE L1 1447 3204 -3737 2381 95 0 0 chr3 12022483 12022788 -206014370 + AluSq SINE Alu 1 305 -8 2074 249 177 30 chr3 12022788 12022880 -206014278 + L1MCc LINE L1 3204 3281 -3660 940 284 100 31 chr3 12022885 12023375 -206013783 + L1ME1 LINE L1 420 943 -5998 1541 202 30 8 chr3 12023580 12023946 -206013212 + L1ME1 LINE L1 1292 1665 -5279 2402 264 76 60 chr3 12023994 12024446 -206012712 + L1MC4 LINE L1 6603 7046 -996 2516 65 10 0 chr3 12024446 12024754 -206012404 + AluY SINE Alu 1 311 0 2402 264 76 60 chr3 12024754 12025718 -206011440 + L1MC4 LINE L1 7046 8042 0 368 194 28 28 chr3 12025706 12025814 -206011344 + L1ME1 LINE L1 2334 2441 -4681 * 1565 166 61 14 chr3 12025818 12026095 -206011063 + AluJo SINE Alu 3 292 -20 651 228 55 42 chr3 12026158 12026395 -206010763 + L1ME1 LINE L1 2439 2678 -4444 41526 44 6 0 chr3 12026407 12032513 -206004645 + L1PA4 LINE L1 11 6154 -1 1897 243 100 28 chr3 12032525 12033965 -206003193 + L1ME1 LINE L1 2703 4204 -2737 2930 163 65 45 chr3 12034024 12034088 -206003070 + L1MB8 LINE L1 5451 5512 -666 2254 86 0 17 chr3 12034088 12034389 -206002769 - AluSx SINE Alu -15 297 2 2930 163 65 45 chr3 12034389 12035036 -206002122 + L1MB8 LINE L1 5512 6176 -2 534 207 152 0 chr3 12035038 12035236 -206001922 + L1ME1 LINE L1 4644 4871 -2070 1231 251 73 27 chr3 12035385 12035903 -206001255 + L1ME1 LINE L1 4863 5404 -1537 3036 201 65 49 chr3 12036097 12037259 -205999899 + L1ME1 LINE L1 5428 6607 -354 2305 89 0 0 chr3 12037259 12037576 -205999582 + AluSg SINE Alu 1 317 0 3036 201 65 49 chr3 12037576 12037934 -205999224 + L1ME1 LINE L1 6607 6958 -3 1884 261 118 28 chr3 12037962 12039665 -205997493 + L1ME3A LINE L1 4297 6156 -14 750 268 49 16 chr3 12039820 12040063 -205997095 - MIR SINE MIR 0 262 12 203 421 69 0 chr3 12040589 12040791 -205996367 - L2 LINE L2 -872 2442 2227 406 320 0 56 chr3 12041192 12041370 -205995788 - MER5A DNA MER1_type -7 182 15 306 256 12 0 chr3 12042162 12042248 -205994910 + MER103 DNA DNA 9 95 -71 23 97 0 0 chr3 12043532 12043604 -205993554 + AT_rich Low_complexity Low_complexity 1 72 0 809 236 121 0 chr3 12045237 12045436 -205991722 - MER58A DNA MER1_type 0 224 2 416 350 32 59 chr3 12046448 12046548 -205990610 + L1MEc LINE L1 22 123 -6273 2307 152 57 2 chr3 12046548 12046950 -205990208 + MSTA LTR MaLR 1 424 -4 416 350 32 59 chr3 12046950 12047223 -205989935 + L1MEc LINE L1 123 385 -6011 365 291 142 28 chr3 12047547 12048125 -205989033 + L1MEc LINE L1 709 1352 -5044 356 158 71 47 chr3 12048151 12048278 -205988880 + L1MEc LINE L1 2889 3018 -3197 1336 243 69 6 chr3 12048314 12048821 -205988337 + L1MEc LINE L1 3099 3637 -2578 862 179 0 0 chr3 12048842 12048976 -205988182 + FRAM SINE Alu 4 137 -39 516 203 7 20 chr3 12048988 12049141 -205988017 + GA-rich Low_complexity Low_complexity 4 154 0 1204 177 148 23 chr3 12049357 12049662 -205987496 - MER2 DNA MER2_type -1 343 1 400 284 0 0 chr3 12049777 12049879 -205987279 + Tigger3(Golem) DNA MER2_type 21 122 -2907 * 4009 118 49 22 chr3 12049856 12049915 -205987243 + Tigger3(Golem) DNA MER2_type 2277 2333 -695 2542 72 0 0 chr3 12049915 12050222 -205986936 - AluSc SINE Alu -2 307 1 4009 118 49 22 chr3 12050222 12050893 -205986265 + Tigger3(Golem) DNA MER2_type 2333 3027 -1 1288 142 90 23 chr3 12051163 12051441 -205985717 + L1MD3 LINE L1 6616 6881 -1114 25 75 0 0 chr3 12053358 12053411 -205983747 + AT_rich Low_complexity Low_complexity 1 53 0 7515 146 69 32 chr3 12053978 12054466 -205982692 + L1MCa LINE L1 32 501 -5925 185 0 40 0 chr3 12054466 12054491 -205982667 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2040 108 7 17 chr3 12054497 12054785 -205982373 - AluSx SINE Alu -27 285 1 7515 146 69 32 chr3 12054785 12056208 -205980950 + L1MCa LINE L1 505 2111 -4315 1413 215 25 25 chr3 12056213 12056571 -205980587 - MLT1A2 LTR MaLR -11 363 6 1190 136 5 5 chr3 12056575 12056774 -205980384 - MLT1A2-int LTR MaLR 0 1735 1537 417 130 0 26 chr3 12057033 12057110 -205980048 - MER116 DNA Mariner 0 80 6 725 198 167 5 chr3 12057119 12057311 -205979847 - MIR SINE MIR -22 240 18 21 0 0 0 chr3 12057311 12057332 -205979826 + AT_rich Low_complexity Low_complexity 1 21 0 572 121 11 0 chr3 12057332 12057423 -205979735 - Tigger5 DNA MER2_type 0 2323 2232 * 896 112 22 0 chr3 12057415 12057549 -205979609 - Tigger5 DNA MER2_type -2185 138 2 440 194 46 23 chr3 12057549 12057724 -205979434 + (TA)n Simple_repeat Simple_repeat 1 179 0 336 258 156 6 chr3 12059682 12059849 -205977309 + L1M4 LINE L1 202 393 -5498 370 399 19 28 chr3 12059903 12060116 -205977042 + L1M3c LINE L1 233 443 -5698 2269 165 70 79 chr3 12060305 12061027 -205976131 - Tigger7 DNA MER2_type -2 2585 3 1332 211 62 59 chr3 12061098 12061586 -205975572 + L1M4 LINE L1 3670 4158 -1812 1298 192 77 15 chr3 12061589 12061927 -205975231 + L1M4 LINE L1 4263 4621 -1349 417 194 32 95 chr3 12062231 12062399 -205974759 + L1ME1 LINE L1 6018 6183 -1 183 279 202 0 chr3 12062461 12062565 -205974593 - MIR SINE MIR -6 256 132 667 159 18 0 chr3 12064236 12064349 -205972809 + AluSg/x SINE Alu 186 300 -12 308 198 83 50 chr3 12064349 12064470 -205972688 + L1MC4a LINE L1 5822 5946 -1862 1861 158 34 0 chr3 12064482 12064779 -205972379 + AluJo SINE Alu 1 307 -5 390 155 0 0 chr3 12064965 12065036 -205972122 + L1ME4a LINE L1 5786 5856 -265 228 306 0 0 chr3 12065090 12065152 -205972006 - MIR SINE MIR -74 188 127 387 196 65 36 chr3 12065226 12065364 -205971794 + L1ME4a LINE L1 5969 6110 -11 298 320 260 0 chr3 12065980 12066161 -205970997 + L3 LINE CR1 1348 1575 -2 567 225 57 107 chr3 12066512 12066756 -205970402 - MIR SINE MIR -18 244 13 182 257 73 83 chr3 12066888 12066997 -205970161 - MIR SINE MIR -50 212 105 375 233 109 91 chr3 12067110 12067440 -205969718 + MER113 DNA MER1_type? 152 487 -34 202 354 42 0 chr3 12068221 12068317 -205968841 - MIR SINE MIR -56 206 107 2601 122 78 7 chr3 12068478 12068929 -205968229 + MER31A LTR ERV1 1 483 -2 261 227 34 23 chr3 12069237 12069325 -205967833 + GA-rich Low_complexity Low_complexity 1 89 0 787 173 38 16 chr3 12069870 12070055 -205967103 - MER53 DNA DNA 0 189 1 530 167 0 9 chr3 12070237 12070351 -205966807 + CT-rich Low_complexity Low_complexity 1 113 0 583 275 69 81 chr3 12070351 12070711 -205966447 - L2 LINE L2 -1 3312 2957 681 254 52 0 chr3 12070736 12070909 -205966249 + MIR SINE MIR 81 262 0 216 302 103 48 chr3 12070918 12071044 -205966114 - L2 LINE L2 -542 2772 2640 211 240 0 20 chr3 12071370 12071420 -205965738 - L2 LINE L2 0 3313 3265 1207 230 22 61 chr3 12071523 12071692 -205965466 - MLT1K LTR MaLR 0 588 414 2222 108 13 7 chr3 12071692 12071999 -205965159 - AluSg SINE Alu -1 309 1 1207 230 22 61 chr3 12071999 12072238 -205964920 - MLT1K LTR MaLR -174 414 196 458 248 85 25 chr3 12072342 12072533 -205964625 + MLT1H LTR MaLR 12 185 -224 313 241 49 25 chr3 12072649 12072813 -205964345 + MLT1H LTR MaLR 395 549 0 180 241 41 152 chr3 12073311 12073456 -205963702 + L2 LINE L2 3140 3268 -4 583 299 47 14 chr3 12073593 12073804 -205963354 + MIR SINE MIR 22 239 -23 400 200 53 0 chr3 12073877 12073952 -205963206 + MIR SINE MIR 9 87 -175 325 264 83 59 chr3 12073954 12074727 -205962431 + L1MC4a LINE L1 6697 7415 -393 1529 165 37 78 chr3 12074773 12075094 -205962064 + AluJb SINE Alu 4 311 -1 289 263 115 42 chr3 12075243 12075574 -205961584 + L1MC5 LINE L1 7558 7912 -49 578 211 149 19 chr3 12076039 12076200 -205960958 + MIR SINE MIR 63 244 -18 502 299 96 0 chr3 12076341 12076498 -205960660 - MIR SINE MIR -79 183 12 1414 168 52 18 chr3 12076704 12076873 -205960285 - AluJo SINE Alu -16 296 111 498 17 0 0 chr3 12076873 12076932 -205960226 + (TG)n Simple_repeat Simple_repeat 2 60 0 1414 168 52 18 chr3 12076932 12077048 -205960110 - AluJo SINE Alu -201 111 1 1136 240 79 31 chr3 12077120 12077574 -205959584 + MLT1K LTR MaLR 1 476 0 1977 125 0 3 chr3 12077940 12078258 -205958900 + AluSx SINE Alu 1 317 0 204 40 0 0 chr3 12078418 12078443 -205958715 + (TTA)n Simple_repeat Simple_repeat 1 25 0 1668 160 0 24 chr3 12078443 12078730 -205958428 - AluJo SINE Alu -32 280 1 385 321 172 20 chr3 12078732 12079232 -205957926 + L2 LINE L2 2692 3272 0 767 248 172 35 chr3 12079313 12079627 -205957531 - L2 LINE L2 0 3313 2957 664 247 88 42 chr3 12080387 12080627 -205956531 + MIR SINE MIR 19 261 -1 1965 129 0 0 chr3 12080639 12080925 -205956233 - AluSx SINE Alu -13 299 14 530 293 84 0 chr3 12081526 12081693 -205955465 - MIR3 SINE MIR -21 187 7 427 307 39 7 chr3 12081850 12082003 -205955155 - MIR SINE MIR -86 176 19 319 310 33 12 chr3 12082079 12082258 -205954900 + MIR3 SINE MIR 3 185 -64 420 176 2 0 chr3 12082750 12082831 -205954327 - MLT1H LTR MaLR 0 549 474 501 288 72 65 chr3 12082938 12083294 -205953864 + MLT1K LTR MaLR 180 580 -8 264 280 64 88 chr3 12083457 12083582 -205953576 + L2 LINE L2 3149 3270 -2 1933 176 89 0 chr3 12083679 12084038 -205953120 + MSTD LTR MaLR 6 396 0 972 262 20 8 chr3 12084374 12084618 -205952540 + MIR SINE MIR 2 248 -14 261 299 127 22 chr3 12087592 12087726 -205949432 + MIR SINE MIR 1 143 -65 347 318 8 16 chr3 12088227 12088353 -205948805 - MIR SINE MIR -110 152 28 302 352 0 0 chr3 12089551 12089639 -205947519 - L1MC4 LINE L1 -1341 6701 6614 916 255 8 13 chr3 12090617 12090856 -205946302 + MIR SINE MIR 12 249 -13 763 225 28 34 chr3 12090918 12091096 -205946062 - MIR SINE MIR -64 198 22 268 273 30 0 chr3 12091501 12091567 -205945591 + MIR SINE MIR 69 136 -126 444 256 39 32 chr3 12093061 12093134 -205944024 - MER103 DNA DNA -8 158 87 1970 135 40 6 chr3 12093134 12093460 -205943698 - MER1B DNA MER1_type 0 337 1 444 256 39 32 chr3 12093460 12093542 -205943616 - MER103 DNA DNA -79 87 2 600 293 105 39 chr3 12094284 12094618 -205942540 + L2 LINE L2 2958 3313 0 210 150 0 0 chr3 12094620 12094660 -205942498 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 24 0 0 0 chr3 12097104 12097128 -205940030 + AT_rich Low_complexity Low_complexity 1 24 0 300 262 24 0 chr3 12098696 12098780 -205938378 - MER117 DNA MER1_type 0 197 112 596 172 101 65 chr3 12099482 12099651 -205937507 + MLT1B LTR MaLR 1 175 -215 1759 148 16 30 chr3 12099651 12099954 -205937204 + AluJb SINE Alu 1 299 -13 902 198 0 23 chr3 12100502 12100679 -205936479 + MIR SINE MIR 63 235 -27 522 275 225 39 chr3 12101667 12102125 -205935033 + L2 LINE L2 2373 2915 -399 340 343 39 34 chr3 12102134 12102338 -205934820 - L1MC4 LINE L1 -17 8025 7821 1816 145 0 26 chr3 12102340 12102651 -205934507 - AluJo SINE Alu -9 303 1 557 267 18 120 chr3 12102656 12102989 -205934169 + L2 LINE L2 2886 3184 -129 229 196 0 0 chr3 12103018 12103069 -205934089 - L1MC4 LINE L1 -1340 6702 6652 426 296 48 0 chr3 12103101 12103226 -205933932 + L2 LINE L2 3182 3312 -1 438 234 177 40 chr3 12103229 12103404 -205933754 - MIR SINE MIR -17 245 47 3692 262 61 18 chr3 12104284 12105398 -205931760 + L1MB7 LINE L1 11 1172 -5687 12735 203 40 41 chr3 12105400 12105490 -205931668 + L1MB7 LINE L1 2672 2761 -4234 1733 172 28 8 chr3 12105490 12105850 -205931308 + L1MA6 LINE L1 5934 6300 0 12735 203 40 41 chr3 12105850 12107660 -205929498 + L1MB7 LINE L1 2761 4571 -2424 1851 135 7 3 chr3 12107660 12107981 -205929177 + AluSx SINE Alu 1 322 0 12735 203 40 41 chr3 12107981 12110435 -205926723 + L1MB7 LINE L1 4571 6995 0 2190 104 0 3 chr3 12110589 12110896 -205926262 + AluSc SINE Alu 1 306 -3 477 209 18 0 chr3 12110978 12111088 -205926070 + L1ME2 LINE L1 5835 5946 -218 2044 128 0 29 chr3 12111426 12111739 -205925419 - AluJb SINE Alu -6 306 3 473 257 54 65 chr3 12112119 12112351 -205924807 - MIR SINE MIR -32 230 2 189 0 0 0 chr3 12112914 12112935 -205924223 + (GA)n Simple_repeat Simple_repeat 1 21 0 1250 246 73 27 chr3 12113237 12113648 -205923510 + MLT1K LTR MaLR 154 583 -5 1253 152 115 12 chr3 12113846 12114090 -205923068 + ORSL DNA AcHobo 3 271 -4 288 193 145 0 chr3 12114352 12114435 -205922723 + L2 LINE L2 3153 3247 -25 227 232 0 0 chr3 12114504 12114560 -205922598 - MER102a DNA MER1_type -28 302 247 189 317 33 0 chr3 12115242 12115302 -205921856 - MIR3 SINE MIR -46 162 101 516 288 75 57 chr3 12115531 12115812 -205921346 - L2 LINE L2 -23 3290 3005 431 278 198 55 chr3 12115830 12116244 -205920914 + L2 LINE L2 2736 3272 0 1563 291 38 15 chr3 12117140 12117617 -205919541 + MLT1K LTR MaLR 98 585 -3 734 283 192 19 chr3 12118387 12118814 -205918344 + MLT1K LTR MaLR 88 588 0 275 232 74 42 chr3 12118814 12118909 -205918249 + L2 LINE L2 3171 3268 -4 3350 252 63 57 chr3 12120376 12121864 -205915294 - L1MC4 LINE L1 -3 8039 6431 953 151 29 92 chr3 12122015 12122189 -205914969 + L1MB8 LINE L1 5955 6112 -66 5502 125 21 3 chr3 12122189 12123059 -205914099 - L1MA4A LINE L1 0 6303 5419 953 151 29 92 chr3 12123059 12123122 -205914036 + L1MB8 LINE L1 6112 6177 -1 1668 256 90 29 chr3 12123321 12123899 -205913259 - L1MC4a LINE L1 -1768 6040 5428 522 318 121 0 chr3 12124144 12124317 -205912841 - MER91A DNA MER1_type 0 196 3 244 333 11 68 chr3 12124468 12124652 -205912506 - MIR SINE MIR -50 212 36 180 77 0 0 chr3 12124742 12124768 -205912390 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 21 0 0 0 chr3 12126252 12126273 -205910885 + AT_rich Low_complexity Low_complexity 1 21 0 804 168 105 53 chr3 12126279 12126488 -205910670 + AluJo SINE Alu 1 220 -92 2079 92 0 3 chr3 12126518 12126800 -205910358 + AluSc SINE Alu 1 281 -28 717 236 130 88 chr3 12127874 12128213 -205908945 + L2 LINE L2 2920 3272 0 270 193 0 0 chr3 12129383 12129440 -205907718 + (TAG)n Simple_repeat Simple_repeat 2 58 0 708 276 40 0 chr3 12129460 12129659 -205907499 + MER63A DNA MER1_type 4 210 0 756 258 191 34 chr3 12130502 12130920 -205906238 + L2 LINE L2 2829 3312 -1 612 62 0 12 chr3 12130983 12131064 -205906094 - MADE1 DNA Mariner 0 80 1 465 259 19 0 chr3 12133670 12133778 -205903380 - MIR SINE MIR -21 241 132 377 234 48 106 chr3 12134303 12134331 -205902827 + MARNA DNA Mariner 17 45 -541 1609 148 3 39 chr3 12134331 12134615 -205902543 + AluJb SINE Alu 1 274 -38 393 22 0 0 chr3 12134621 12134667 -205902491 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 377 234 48 106 chr3 12134667 12134819 -205902339 + MARNA DNA Mariner 50 193 -393 500 277 82 31 chr3 12134953 12135148 -205902010 + MARNA DNA Mariner 381 585 -1 810 185 45 13 chr3 12135424 12135581 -205901577 - FRAM SINE Alu 0 166 5 286 226 58 123 chr3 12137669 12137824 -205899334 - MIR SINE MIR -31 231 87 2181 113 0 3 chr3 12137884 12138194 -205898964 - AluSg SINE Alu -1 309 1 232 275 247 18 chr3 12138213 12138381 -205898777 - MIR SINE MIR -50 212 9 368 293 7 22 chr3 12139431 12139583 -205897575 - MIR SINE MIR -64 144 34 187 197 0 42 chr3 12140078 12140149 -205897009 + GA-rich Low_complexity Low_complexity 3 70 0 297 0 0 0 chr3 12141033 12141066 -205896092 + (CAAAA)n Simple_repeat Simple_repeat 5 37 0 511 275 21 42 chr3 12142796 12142989 -205894169 + MER5A DNA MER1_type 1 189 0 222 195 0 0 chr3 12143002 12143043 -205894115 - L2 LINE L2 -11 3261 3221 2220 278 153 37 chr3 12143208 12143935 -205893223 + L2 LINE L2 1536 2177 -1136 1910 208 29 9 chr3 12143935 12144354 -205892804 - L1MB7 LINE L1 -1 6183 5757 2220 278 153 37 chr3 12144354 12144997 -205892161 + L2 LINE L2 2177 3052 -261 301 74 19 19 chr3 12145007 12145061 -205892097 + (TTTTA)n Simple_repeat Simple_repeat 1 54 0 1093 138 28 22 chr3 12145063 12145244 -205891914 - AluJo SINE Alu -44 268 87 505 306 43 39 chr3 12145249 12145504 -205891654 + L2 LINE L2 3058 3313 0 315 276 92 0 chr3 12145622 12145720 -205891438 - MIR SINE MIR -71 137 31 402 324 0 10 chr3 12145952 12146054 -205891104 + MIR SINE MIR 32 132 -76 264 280 187 13 chr3 12146059 12146209 -205890949 - MER20B DNA MER1_type -43 176 1 1159 188 94 42 chr3 12146213 12146290 -205890868 - MER33 DNA MER1_type -2261 324 252 1935 150 0 6 chr3 12146290 12146604 -205890554 + AluSx SINE Alu 1 312 0 1159 188 94 42 chr3 12146604 12146834 -205890324 - MER33 DNA MER1_type -2333 252 1 418 308 55 52 chr3 12147286 12147614 -205889544 + L2 LINE L2 2814 3142 -171 931 133 13 6 chr3 12147635 12147793 -205889365 - AluSg/x SINE Alu -22 290 132 274 263 97 79 chr3 12147796 12147910 -205889248 + L2 LINE L2 3155 3270 -43 21 0 0 0 chr3 12148162 12148183 -205888975 + AT_rich Low_complexity Low_complexity 1 21 0 678 152 0 0 chr3 12148686 12148785 -205888373 - Tigger7 DNA MER2_type 0 2587 2489 * 1347 174 0 107 chr3 12148783 12149082 -205888076 - Tigger7 DNA MER2_type -2220 267 1 913 155 40 0 chr3 12149495 12149669 -205887489 + L1MC3 LINE L1 7605 7785 0 332 43 0 21 chr3 12149972 12150019 -205887139 + (ATG)n Simple_repeat Simple_repeat 3 48 0 410 160 20 60 chr3 12150598 12150698 -205886460 - L1ME2 LINE L1 -60 6104 6009 597 221 42 1 chr3 12150703 12150851 -205886307 + L1ME2 LINE L1 5933 6248 -86 411 374 25 5 chr3 12150851 12151054 -205886104 - L2 LINE L2 -376 2938 2732 2364 42 0 7 chr3 12151293 12151603 -205885555 - AluY SINE Alu 0 308 1 352 272 65 19 chr3 12152467 12152622 -205884536 - MIR SINE MIR -62 146 21 211 276 35 0 chr3 12152834 12152892 -205884266 + L2 LINE L2 3246 3305 -8 * 693 271 94 36 chr3 12152891 12153010 -205884148 - L2 LINE L2 -94 3219 3108 1441 198 7 16 chr3 12153010 12153313 -205883845 + AluJo SINE Alu 1 300 -12 693 271 94 36 chr3 12153313 12153470 -205883688 - L2 LINE L2 -205 3108 2927 229 290 43 32 chr3 12153977 12154070 -205883088 + MIR3 SINE MIR 77 170 -38 202 118 20 98 chr3 12154144 12154195 -205882963 - MIR3 SINE MIR -49 159 113 255 265 48 48 chr3 12154233 12154249 -205882909 - MER5B DNA MER1_type -95 83 68 1297 136 3 183 chr3 12154249 12154610 -205882548 - AluJb SINE Alu -16 296 1 255 265 48 48 chr3 12154610 12154676 -205882482 - MER5B DNA MER1_type -109 69 1 1455 330 169 30 chr3 12155240 12155489 -205881669 + L3 LINE CR1 283 496 -1081 1524 170 76 10 chr3 12155489 12155778 -205881380 - AluJb SINE Alu -4 308 1 1455 330 169 30 chr3 12155778 12156176 -205880982 + L3 LINE CR1 496 837 -740 2145 101 7 3 chr3 12156176 12156482 -205880676 - AluSx SINE Alu -5 307 1 1455 330 169 30 chr3 12156482 12156963 -205880195 + L3 LINE CR1 837 1569 -8 748 241 29 0 chr3 12158323 12158497 -205878661 - MSTD LTR MaLR -212 184 6 264 280 64 88 chr3 12158594 12158719 -205878439 - L2 LINE L2 -2 3270 3149 431 291 81 63 chr3 12158882 12159234 -205877924 - MLT1K LTR MaLR -8 580 180 400 210 0 0 chr3 12159341 12159422 -205877736 + MLT1H LTR MaLR 469 549 0 271 262 0 0 chr3 12160456 12160517 -205876641 - MER20 DNA MER1_type -5 214 154 1471 169 75 52 chr3 12160551 12160900 -205876258 + MLT1B LTR MaLR 34 390 0 548 171 55 75 chr3 12160905 12161051 -205876107 - MER20 DNA MER1_type -76 143 1 255 200 143 14 chr3 12161063 12161133 -205876025 + L2 LINE L2 3230 3308 -5 204 40 0 0 chr3 12162374 12162399 -205874759 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 3003 247 58 64 chr3 12162784 12164103 -205873055 - L1MC4 LINE L1 -98 7710 6431 803 161 0 58 chr3 12164254 12164428 -205872730 + L1MB8 LINE L1 5955 6118 -60 3991 179 18 3 chr3 12164428 12165193 -205871965 - L1MA4A LINE L1 0 6303 5527 594 267 43 16 chr3 12165193 12165380 -205871778 - LTR16A LTR ERVL -177 273 82 273 200 0 80 chr3 12165397 12165472 -205871686 - L2 LINE L2 -86 3227 3159 791 173 43 0 chr3 12165789 12165951 -205871207 + L1MC3 LINE L1 7617 7785 0 332 43 0 21 chr3 12166254 12166301 -205870857 + (ATG)n Simple_repeat Simple_repeat 3 48 0 410 160 20 60 chr3 12166880 12166980 -205870178 - L1ME2 LINE L1 -60 6104 6009 503 267 44 0 chr3 12166985 12167120 -205870038 + L1ME2 LINE L1 5933 6073 -91 245 316 35 9 chr3 12167124 12167238 -205869920 - L2 LINE L2 -327 2945 2829 2350 45 0 7 chr3 12167596 12167882 -205869276 - AluY SINE Alu -27 284 1 579 293 26 37 chr3 12169218 12169409 -205867749 - MIR3 SINE MIR -3 205 17 23 0 0 0 chr3 12169454 12169477 -205867681 + AT_rich Low_complexity Low_complexity 1 23 0 3951 187 30 21 chr3 12169477 12170176 -205866982 - L1MB7 LINE L1 -77 6107 5399 1983 145 13 0 chr3 12170176 12170480 -205866678 - AluJb SINE Alu -4 308 1 3951 187 30 21 chr3 12170480 12170556 -205866602 - L1MB7 LINE L1 -785 5399 5325 816 157 0 22 chr3 12170556 12170690 -205866468 - FLAM_C SINE Alu -2 131 1 226 269 167 0 chr3 12170722 12170800 -205866358 - MER117 DNA MER1_type -105 92 2 261 0 0 0 chr3 12171392 12171421 -205865737 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 217 231 0 0 chr3 12171474 12171526 -205865632 + (ATG)n Simple_repeat Simple_repeat 2 53 0 244 231 0 0 chr3 12172534 12172586 -205864572 + MER117 DNA MER1_type 2 53 -144 1308 158 35 0 chr3 12172697 12172925 -205864233 - AluSx SINE Alu -76 236 1 1843 131 6 44 chr3 12173142 12173463 -205863695 + AluJo SINE Alu 1 309 -3 233 350 41 0 chr3 12173925 12174022 -205863136 - L2 LINE L2 -31 3241 3141 250 203 101 0 chr3 12174558 12174627 -205862531 - L2 LINE L2 0 3272 3197 719 242 11 32 chr3 12175262 12175452 -205861706 - MIR SINE MIR -28 234 49 182 262 0 0 chr3 12176129 12176171 -205860987 + L2 LINE L2 2995 3036 -277 3252 128 44 11 chr3 12176265 12176857 -205860301 + MER4B LTR ERV1 3 779 0 372 269 30 30 chr3 12176867 12177001 -205860157 + L2 LINE L2 3176 3309 -4 261 137 39 39 chr3 12177221 12177272 -205859886 + AluJ/FLAM SINE Alu 16 66 -236 191 341 24 24 chr3 12177273 12177355 -205859803 + L2 LINE L2 3231 3312 -1 430 320 110 29 chr3 12177423 12177704 -205859454 - MER102b DNA MER1_type -4 337 34 756 125 35 49 chr3 12177760 12177904 -205859254 + MER20 DNA MER1_type 16 157 -62 228 322 43 17 chr3 12178423 12178538 -205858620 - L2 LINE L2 -16 3256 3139 334 315 54 23 chr3 12179101 12179231 -205857927 - MIR SINE MIR -32 230 97 357 214 67 34 chr3 12179277 12179366 -205857792 - L1MC4 LINE L1 -1339 6703 6612 304 286 22 22 chr3 12179526 12179617 -205857541 + L1MC4 LINE L1 6612 6702 -1340 380 182 45 23 chr3 12179623 12179711 -205857447 + L1MC4 LINE L1 6614 6703 -1339 336 239 11 43 chr3 12179685 12179777 -205857381 - L1MC4 LINE L1 -1341 6701 6613 * 219 232 0 0 chr3 12179798 12179854 -205857304 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 1866 156 30 3 chr3 12179856 12180151 -205857007 - AluJb SINE Alu -9 303 1 186 259 69 35 chr3 12180159 12180217 -205856941 - L2 LINE L2 -17 3296 3237 759 285 58 47 chr3 12180229 12180408 -205856750 - LTR16A LTR ERVL 0 450 274 4634 92 5 3 chr3 12180408 12181050 -205856108 - L1PA12 LINE L1 -1 6167 5525 759 285 58 47 chr3 12181050 12181235 -205855923 - LTR16A LTR ERVL -176 274 82 267 218 0 77 chr3 12181252 12181330 -205855828 - L2 LINE L2 -86 3227 3156 395 113 0 16 chr3 12181752 12181814 -205855344 - MLT1L LTR MaLR -8 607 547 633 301 59 14 chr3 12182682 12182971 -205854187 + L1MC4a LINE L1 5666 5967 -1841 2241 141 8 22 chr3 12183812 12184041 -205853117 - MLT1A1 LTR MaLR 0 365 141 2055 146 152 19 chr3 12184041 12184417 -205852741 - MSTB LTR MaLR 0 426 1 2241 141 8 22 chr3 12184417 12184557 -205852601 - MLT1A1 LTR MaLR -224 141 1 398 248 17 8 chr3 12184722 12184839 -205852319 - MER103 DNA DNA -29 137 20 402 261 116 36 chr3 12184924 12185062 -205852096 - MIR3 SINE MIR -49 159 11 3005 119 111 15 chr3 12185324 12185802 -205851356 - MER1A DNA MER1_type 0 527 4 234 333 30 0 chr3 12185998 12186097 -205851061 + MER103 DNA DNA 63 164 -2 205 296 43 24 chr3 12186523 12186627 -205850531 - MER5B DNA MER1_type -64 118 22 246 369 27 0 chr3 12186710 12186821 -205850337 + MIR SINE MIR 32 145 -117 330 300 169 25 chr3 12187395 12187555 -205849603 + MIR3 SINE MIR 20 202 -6 246 279 34 32 chr3 12187670 12187817 -205849341 + MIR SINE MIR 2 218 -44 223 177 177 32 chr3 12188480 12188542 -205848616 + MIR SINE MIR 77 147 -115 211 232 98 24 chr3 12188590 12188672 -205848486 + L2 LINE L2 3159 3246 -26 1283 76 0 43 chr3 12189245 12189429 -205847729 + L1PA6 LINE L1 5977 6152 -2 210 245 113 38 chr3 12189534 12189640 -205847518 + L2 LINE L2 3149 3262 -10 180 0 0 0 chr3 12189676 12189696 -205847462 + (GGGA)n Simple_repeat Simple_repeat 2 21 0 305 269 104 52 chr3 12189865 12189999 -205847159 + MIR SINE MIR 40 180 -82 228 236 93 14 chr3 12190027 12190105 -205847053 - MIR SINE MIR -40 168 87 598 203 17 0 chr3 12190107 12190225 -205846933 - MLT1K LTR MaLR 0 555 436 294 241 138 13 chr3 12190305 12190435 -205846723 - MLT1H LTR MaLR -235 174 56 189 107 0 0 chr3 12190863 12190891 -205846267 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 239 403 8 0 chr3 12190996 12191125 -205846033 + (CA)n Simple_repeat Simple_repeat 1 130 0 294 260 13 13 chr3 12191712 12191789 -205845369 + MIR SINE MIR 17 93 -115 23 33 0 0 chr3 12192322 12192352 -205844806 + AT_rich Low_complexity Low_complexity 1 30 0 331 307 69 55 chr3 12192432 12192650 -205844508 - L1MC4a LINE L1 -1747 6061 5841 677 293 103 17 chr3 12192666 12192898 -205844260 - MIR SINE MIR -8 254 3 1848 160 10 22 chr3 12192952 12193265 -205843893 + AluJb SINE Alu 1 309 -3 284 276 197 0 chr3 12194336 12194463 -205842695 - MLT1K LTR MaLR -18 570 419 244 289 115 39 chr3 12194475 12194579 -205842579 + L2 LINE L2 3197 3308 -5 194 61 0 30 chr3 12194654 12194687 -205842471 + (TTCC)n Simple_repeat Simple_repeat 1 32 0 441 0 0 0 chr3 12194699 12194748 -205842410 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 1063 245 78 59 chr3 12194755 12195179 -205841979 - MLT1K LTR MaLR -155 433 2 697 320 92 31 chr3 12195268 12195627 -205841531 + L2 LINE L2 2886 3266 -6 357 216 0 0 chr3 12195734 12195822 -205841336 + (TCCA)n Simple_repeat Simple_repeat 4 91 0 297 274 132 9 chr3 12195873 12195979 -205841179 - L2 LINE L2 -2 3311 3193 305 292 57 94 chr3 12196307 12196417 -205840741 + MIR3 SINE MIR 3 106 -102 2309 85 0 0 chr3 12196417 12196722 -205840436 - AluSg SINE Alu 0 305 1 305 292 57 94 chr3 12196722 12196802 -205840356 + MIR3 SINE MIR 106 187 -21 1018 258 21 0 chr3 12197277 12197510 -205839648 + MIR SINE MIR 24 261 -1 1307 112 21 0 chr3 12198571 12198759 -205838399 - L1PA10 LINE L1 -1 6167 5976 189 107 0 0 chr3 12199227 12199255 -205837903 + (TGG)n Simple_repeat Simple_repeat 1 28 0 942 232 77 0 chr3 12199278 12199498 -205837660 - MIR SINE MIR -22 240 4 2278 112 3 0 chr3 12199592 12199888 -205837270 + AluSq SINE Alu 3 299 -14 256 260 39 52 chr3 12200105 12200182 -205836976 - MIR SINE MIR -182 80 5 292 298 0 12 chr3 12200550 12200634 -205836524 + MLT1K LTR MaLR 182 264 -324 233 219 12 49 chr3 12200750 12200832 -205836326 + MLT1K LTR MaLR 454 532 -56 2297 122 0 0 chr3 12201384 12201688 -205835470 - AluSx SINE Alu -8 304 1 219 69 0 0 chr3 12201830 12201859 -205835299 + (CA)n Simple_repeat Simple_repeat 1 29 0 216 0 0 0 chr3 12202129 12202153 -205835005 + (CAA)n Simple_repeat Simple_repeat 1 24 0 627 311 0 5 chr3 12203146 12203339 -205833819 - MIR SINE MIR 0 262 71 189 0 0 0 chr3 12203713 12203734 -205833424 + (TC)n Simple_repeat Simple_repeat 2 22 0 282 324 0 0 chr3 12204084 12204155 -205833003 + (CCCA)n Simple_repeat Simple_repeat 2 72 0 801 194 0 0 chr3 12204155 12204335 -205832823 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 1027 278 64 82 chr3 12204945 12205508 -205831650 - L1ME3A LINE L1 -214 5956 5384 1863 151 0 20 chr3 12205508 12205800 -205831358 - AluJo SINE Alu -13 299 14 1027 278 64 82 chr3 12205800 12206514 -205830644 - L1ME3A LINE L1 -786 5384 4708 1989 134 6 26 chr3 12206542 12206855 -205830303 + AluJo SINE Alu 6 312 0 345 241 50 60 chr3 12206881 12207080 -205830078 + L1M4 LINE L1 2788 2984 -3162 251 267 79 0 chr3 12207227 12207328 -205829830 - L1M4 LINE L1 -2097 4049 3941 * 262 310 172 0 chr3 12207324 12207469 -205829689 + L1M4 LINE L1 4039 4208 -1938 36 0 0 0 chr3 12207624 12207660 -205829498 + AT_rich Low_complexity Low_complexity 1 36 0 1731 185 0 17 chr3 12207672 12207689 -205829469 - AluJo SINE Alu -15 297 281 426 85 0 0 chr3 12207689 12207748 -205829410 + (TA)n Simple_repeat Simple_repeat 2 60 0 1731 185 0 17 chr3 12207748 12208032 -205829126 - AluJo SINE Alu -31 281 1 624 264 165 0 chr3 12208048 12208260 -205828898 - MIR SINE MIR -13 249 3 1113 289 74 5 chr3 12208375 12208769 -205828389 + LTR16A LTR ERVL 19 439 -11 1683 153 51 0 chr3 12209031 12209306 -205827852 - AluJo SINE Alu -23 289 1 516 257 90 0 chr3 12209379 12209523 -205827635 + MIR SINE MIR 102 258 -4 353 68 0 0 chr3 12210350 12210394 -205826764 + MIR3 SINE MIR 115 158 -50 1130 178 5 0 chr3 12210395 12210580 -205826578 + MER5A DNA MER1_type 2 187 -2 503 295 52 52 chr3 12210611 12210940 -205826218 - MER102b DNA MER1_type -12 329 1 906 355 115 15 chr3 12211317 12211968 -205825190 + L3 LINE CR1 786 1501 -76 924 269 97 71 chr3 12212005 12212541 -205824617 + MLT1K LTR MaLR 37 586 -2 395 333 92 19 chr3 12212918 12213125 -205824033 - MIR SINE MIR -6 256 35 621 269 26 52 chr3 12214090 12214358 -205822800 - MIR SINE MIR 0 262 2 206 283 0 0 chr3 12214462 12214508 -205822650 - MIR SINE MIR -57 151 106 310 219 0 0 chr3 12214514 12214578 -205822580 - L2 LINE L2 -9 3263 3200 901 246 79 61 chr3 12214592 12215164 -205821994 + L1ME4a LINE L1 5522 6103 -18 284 263 124 25 chr3 12215658 12215821 -205821337 - MIR3 SINE MIR -37 171 21 1074 158 16 0 chr3 12216247 12216431 -205820727 + MER5A DNA MER1_type 1 187 -2 2128 160 11 3 chr3 12216503 12216866 -205820292 - MER47A DNA MER2_type 0 366 1 2420 90 63 0 chr3 12217241 12217575 -205819583 + THE1A LTR MaLR 1 355 0 201 158 26 0 chr3 12217648 12217686 -205819472 + (CACCC)n Simple_repeat Simple_repeat 3 41 0 261 307 33 65 chr3 12218167 12218320 -205818838 + L2 LINE L2 2911 3058 -255 907 171 50 11 chr3 12218329 12218510 -205818648 + MER5A DNA MER1_type 1 188 -1 367 273 61 0 chr3 12218531 12218630 -205818528 + L2 LINE L2 3141 3245 -27 219 255 10 71 chr3 12218659 12218757 -205818401 - L2 LINE L2 -246 3026 2935 747 219 43 12 chr3 12218903 12219067 -205818091 + MER5B DNA MER1_type 4 172 -6 1916 166 7 0 chr3 12219078 12219373 -205817785 + AluJo SINE Alu 1 297 -15 225 296 0 0 chr3 12219459 12219513 -205817645 + (TGGG)n Simple_repeat Simple_repeat 1 54 0 224 294 123 70 chr3 12220285 12220683 -205816475 - L2 LINE L2 -38 3234 2816 311 335 50 29 chr3 12220910 12221152 -205816006 - L2 LINE L2 -810 2504 2258 185 167 148 102 chr3 12221622 12221730 -205815428 + MIR SINE MIR 8 120 -142 587 280 50 121 chr3 12221800 12222279 -205814879 - L2 LINE L2 -1 3271 2827 416 251 140 39 chr3 12223145 12223324 -205813834 - L2 LINE L2 -2 3311 3115 276 258 67 34 chr3 12223573 12223662 -205813496 + L2 LINE L2 3180 3271 -1 2409 151 38 16 chr3 12223891 12224341 -205812817 - MLT1C LTR MaLR -1 466 7 1938 87 68 13 chr3 12224341 12224651 -205812507 + THE1C LTR MaLR 1 327 -48 389 335 82 26 chr3 12224854 12225048 -205812110 + MIR SINE MIR 31 235 -27 416 352 28 56 chr3 12225612 12225825 -205811333 - MIR SINE MIR -26 236 30 488 208 129 16 chr3 12226461 12226785 -205810373 + MER113 DNA MER1_type? 19 413 -108 637 280 28 11 chr3 12226865 12227047 -205810111 - L3 LINE CR1 -105 1472 1288 492 341 23 56 chr3 12227496 12227710 -205809448 + MIR SINE MIR 30 236 -26 1672 166 14 54 chr3 12228579 12228875 -205808283 + AluJo SINE Alu 1 313 0 187 103 0 0 chr3 12228875 12228904 -205808254 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 192 77 0 0 chr3 12228983 12229009 -205808149 + (TCC)n Simple_repeat Simple_repeat 2 27 0 620 275 12 6 chr3 12229369 12229529 -205807629 - MER5A DNA MER1_type -3 186 26 413 276 40 63 chr3 12229715 12229889 -205807269 - L2 LINE L2 0 3272 3103 197 314 88 0 chr3 12230191 12230293 -205806865 + L2 LINE L2 2964 3074 -198 1179 248 93 20 chr3 12230295 12230734 -205806424 + MLT1H1 LTR MaLR 18 488 -67 448 269 115 0 chr3 12230864 12230968 -205806190 + L2 LINE L2 3157 3272 0 189 240 160 0 chr3 12230976 12231051 -205806107 - L2 LINE L2 -167 3105 3019 183 402 12 0 chr3 12231187 12231269 -205805889 + L2 LINE L2 3189 3271 -1 217 291 103 51 chr3 12231288 12231405 -205805753 + MIR SINE MIR 19 141 -67 398 344 52 7 chr3 12231739 12231893 -205805265 + MIR3 SINE MIR 19 179 -29 243 266 83 37 chr3 12232755 12232864 -205804294 + MIR SINE MIR 51 164 -98 368 226 150 8 chr3 12232914 12233047 -205804111 + L1ME4a LINE L1 5968 6119 -2 2501 70 0 0 chr3 12233168 12233467 -205803691 + AluY SINE Alu 1 299 -12 2580 156 16 9 chr3 12233660 12234110 -205803048 + L1MB3 LINE L1 5727 6179 -4 192 77 0 0 chr3 12234110 12234136 -205803022 + (CATA)n Simple_repeat Simple_repeat 2 27 0 2210 113 7 0 chr3 12234141 12234425 -205802733 + AluSx SINE Alu 1 286 -26 330 222 0 0 chr3 12234425 12234488 -205802670 + L1MC4 LINE L1 6641 6703 -1339 207 0 0 0 chr3 12234504 12234527 -205802631 + (GA)n Simple_repeat Simple_repeat 2 24 0 403 252 94 38 chr3 12235151 12235310 -205801848 - MIR SINE MIR 0 262 95 890 277 126 25 chr3 12235848 12236318 -205800840 + MER113 DNA MER1_type? 5 521 0 674 255 101 49 chr3 12236760 12237066 -205800092 + Charlie2 DNA MER1_type 2 323 -2459 1942 104 56 0 chr3 12237066 12237335 -205799823 + AluY SINE Alu 1 284 -27 318 80 0 0 chr3 12237335 12237385 -205799773 + (CTAA)n Simple_repeat Simple_repeat 3 52 0 1325 198 0 8 chr3 12237403 12237650 -205799508 + L1PB4 LINE L1 5908 6152 -4 206 0 0 0 chr3 12237746 12237769 -205799389 + MER5C DNA MER1_type 4 26 -298 1628 151 0 53 chr3 12237773 12238058 -205799100 + AluJo SINE Alu 18 287 -25 385 97 32 32 chr3 12238060 12238122 -205799036 + MER5A DNA MER1_type 10 71 -118 828 182 0 82 chr3 12238123 12238160 -205798998 + AluJo SINE Alu 88 126 -186 2313 99 0 3 chr3 12238160 12238463 -205798695 - AluSc SINE Alu -7 302 1 828 182 0 82 chr3 12238463 12238595 -205798563 + AluJo SINE Alu 126 243 -69 207 0 0 0 chr3 12238621 12238644 -205798514 + (GAAAA)n Simple_repeat Simple_repeat 1 23 0 255 103 0 0 chr3 12238645 12238684 -205798474 + (GGGGA)n Simple_repeat Simple_repeat 5 43 0 268 150 62 38 chr3 12238702 12238782 -205798376 + L1MA10 LINE L1 6253 6334 0 276 250 230 20 chr3 12238794 12238894 -205798264 + MER5A DNA MER1_type 69 189 0 731 208 156 34 chr3 12238905 12239284 -205797874 + Charlie2 DNA MER1_type 2231 2655 -207 800 271 34 7 chr3 12239285 12239554 -205797604 + L1ME3 LINE L1 5615 5890 -272 591 273 78 0 chr3 12239568 12239773 -205797385 + L1ME3 LINE L1 5942 6162 0 705 165 16 8 chr3 12239821 12239942 -205797216 - FLAM_C SINE Alu -17 126 5 397 160 4 208 chr3 12239959 12240190 -205796968 + Charlie2 DNA MER1_type 2663 2846 -16 2320 105 0 0 chr3 12240484 12240778 -205796380 - AluSx SINE Alu -18 294 1 339 167 65 9 chr3 12240846 12240954 -205796204 + (CA)n Simple_repeat Simple_repeat 1 114 0 271 282 46 81 chr3 12241164 12241338 -205795820 - MIR SINE MIR -93 169 2 183 80 0 0 chr3 12241883 12241908 -205795250 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 193 295 64 13 chr3 12242063 12242141 -205795017 - MIR3 SINE MIR -23 185 104 2428 99 0 10 chr3 12242147 12242459 -205794699 - AluSx SINE Alu -3 309 1 210 350 58 0 chr3 12242485 12242588 -205794570 + L2 LINE L2 2697 2805 -509 3554 150 60 19 chr3 12242812 12243480 -205793678 - L1MC2 LINE L1 -9 6335 5641 260 94 57 0 chr3 12243481 12243534 -205793624 - L1MC2 LINE L1 0 6344 6289 299 128 73 18 chr3 12243711 12243820 -205793338 + (TA)n Simple_repeat Simple_repeat 1 115 0 752 219 56 85 chr3 12243834 12243920 -205793238 - L1MC2 LINE L1 -1865 5943 5856 2097 131 0 7 chr3 12243920 12244211 -205792947 + AluSx SINE Alu 1 289 -23 752 219 56 85 chr3 12244211 12244443 -205792715 - L1MC2 LINE L1 -1952 5856 5634 479 203 23 73 chr3 12244557 12244734 -205792424 + L1MC5 LINE L1 7758 7925 -36 504 297 36 0 chr3 12245193 12245331 -205791827 - MIR SINE MIR -72 190 48 593 223 192 16 chr3 12245565 12245758 -205791400 + MIR SINE MIR 6 232 -30 648 133 285 0 chr3 12245770 12245928 -205791230 - MER3 DNA MER1_type -6 203 1 426 298 48 37 chr3 12246244 12246432 -205790726 + MIR SINE MIR 21 210 -52 353 267 134 31 chr3 12246475 12246700 -205790458 + MIR SINE MIR 2 250 -12 204 79 0 53 chr3 12247115 12247153 -205790005 + (CCCCG)n Simple_repeat Simple_repeat 1 36 0 273 227 96 18 chr3 12247387 12247486 -205789672 - MIR SINE MIR -60 148 28 568 270 15 7 chr3 12247586 12247723 -205789435 + MIR SINE MIR 20 157 -105 490 274 8 0 chr3 12247751 12247875 -205789283 - MIR SINE MIR -65 197 73 1115 214 114 80 chr3 12248872 12249329 -205787829 + MER113 DNA MER1_type? 6 483 -38 2012 118 74 6 chr3 12249329 12249667 -205787491 + MER46B DNA MER2_type 1 236 0 1115 214 114 80 chr3 12249667 12249708 -205787450 + MER113 DNA MER1_type? 483 521 0 199 254 48 16 chr3 12249874 12249937 -205787221 + L2 LINE L2 3249 3313 0 2089 209 47 10 chr3 12249948 12250435 -205786723 + MLT1D LTR MaLR 1 505 0 206 278 102 46 chr3 12250660 12250768 -205786390 - L2 LINE L2 -11 3261 3148 333 68 0 0 chr3 12250843 12250887 -205786271 + (CA)n Simple_repeat Simple_repeat 1 44 0 715 303 84 9 chr3 12250888 12251221 -205785937 + L1ME4a LINE L1 5681 6038 -83 949 239 41 18 chr3 12251263 12251481 -205785677 - MER58A DNA MER1_type 0 224 2 450 0 0 0 chr3 12252280 12252330 -205784828 + (TG)n Simple_repeat Simple_repeat 2 51 0 244 191 138 64 chr3 12252833 12252927 -205784231 + MIR SINE MIR 104 204 -58 287 229 29 0 chr3 12253346 12253416 -205783742 + MIR SINE MIR 54 125 -83 1998 152 0 16 chr3 12253551 12253866 -205783292 - AluJb SINE Alu -2 310 1 645 277 36 111 chr3 12254491 12255175 -205781983 + L2 LINE L2 2367 2984 -288 2747 82 6 3 chr3 12255175 12255529 -205781629 + THE1A LTR MaLR 1 355 0 645 277 36 111 chr3 12255529 12255550 -205781608 + L2 LINE L2 2984 3005 -267 375 200 120 0 chr3 12255572 12255672 -205781486 + MIR SINE MIR 141 252 -10 2135 130 0 10 chr3 12255798 12256122 -205781036 - AluSx SINE Alu 0 312 1 265 332 58 63 chr3 12256265 12256765 -205780393 - L2 LINE L2 0 3272 2772 255 200 20 0 chr3 12257268 12257318 -205779840 + L2 LINE L2 2978 3028 -244 377 275 87 29 chr3 12257754 12257892 -205779266 - MIR SINE MIR -34 228 83 216 67 0 0 chr3 12258880 12258910 -205778248 + (GGA)n Simple_repeat Simple_repeat 1 30 0 2345 97 3 3 chr3 12259660 12259970 -205777188 + AluSg SINE Alu 1 310 0 908 278 50 42 chr3 12260106 12260506 -205776652 + MLT1H LTR MaLR 1 403 -146 489 260 84 101 chr3 12260645 12261099 -205776059 - L2 LINE L2 0 3272 2827 228 67 0 0 chr3 12261520 12261550 -205775608 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 646 179 32 8 chr3 12262784 12262907 -205774251 + L2 LINE L2 3181 3306 -7 234 81 0 0 chr3 12263114 12263151 -205774007 + (TC)n Simple_repeat Simple_repeat 2 38 0 988 248 48 22 chr3 12263449 12263825 -205773333 + LTR16A LTR ERVL 26 450 0 604 187 134 53 chr3 12264002 12264173 -205772985 - MIR SINE MIR 0 262 78 435 267 93 0 chr3 12265436 12265597 -205771561 + Charlie8 DNA MER1_type 53 228 -2189 863 266 67 57 chr3 12265728 12266540 -205770618 - L1MEd LINE L1 -856 1634 845 2546 51 0 0 chr3 12266557 12266850 -205770308 - AluY SINE Alu -18 293 1 1992 120 157 19 chr3 12267805 12268181 -205768977 - MSTA LTR MaLR 0 428 1 622 254 225 0 chr3 12268209 12268418 -205768740 - MIR SINE MIR 0 262 7 292 229 156 21 chr3 12269270 12269366 -205767792 - MIR SINE MIR -103 159 51 435 101 14 0 chr3 12270336 12270405 -205766753 + L1PA15 LINE L1 6087 6156 -9 608 201 255 0 chr3 12270758 12270907 -205766251 + MIR SINE MIR 12 198 -64 2423 183 82 19 chr3 12270922 12271447 -205765711 + MLT1F1 LTR MaLR 1 558 -9 195 209 0 149 chr3 12271460 12271527 -205765631 + MIR SINE MIR 190 246 -16 1574 161 92 69 chr3 12271600 12272047 -205765111 + L1MC4 LINE L1 6985 7441 -601 284 258 27 30 chr3 12272128 12272283 -205764875 - MIR SINE MIR -27 235 34 2487 147 70 2 chr3 12272612 12273055 -205764103 + L1MB3 LINE L1 5704 6176 -7 510 179 51 26 chr3 12273471 12273588 -205763570 + MIR SINE MIR 87 206 -56 821 290 67 0 chr3 12273633 12273857 -205763301 + MIR SINE MIR 13 251 -11 246 274 24 12 chr3 12274635 12274719 -205762439 - MIR SINE MIR -12 250 166 1853 71 5 0 chr3 12274721 12274945 -205762213 - AluSp SINE Alu -2 311 87 206 295 16 0 chr3 12274945 12275006 -205762152 - MIR SINE MIR -114 94 33 1981 145 3 0 chr3 12275011 12275340 -205761818 - AluSx SINE Alu 0 330 1 189 224 259 35 chr3 12275605 12275721 -205761437 - MIR3 SINE MIR -62 146 5 476 308 162 32 chr3 12276301 12276812 -205760346 + L2 LINE L2 2712 3272 0 465 257 142 0 chr3 12276961 12277074 -205760084 + L2 LINE L2 3142 3270 -2 484 232 92 30 chr3 12277103 12277267 -205759891 + MLT1J LTR MaLR 11 184 -327 306 252 148 26 chr3 12277282 12277437 -205759721 + MLT1J LTR MaLR 303 476 -35 313 385 65 6 chr3 12277456 12277807 -205759351 + L2 LINE L2 582 953 -2361 461 253 41 41 chr3 12278737 12278883 -205758275 - MIR SINE MIR -50 212 67 246 182 45 0 chr3 12279617 12279661 -205757497 + MIR SINE MIR 5 50 -212 * 547 287 126 12 chr3 12279650 12279817 -205757341 - MER91A DNA MER1_type -10 186 1 * 709 282 44 5 chr3 12279817 12280020 -205757138 + MIR SINE MIR 51 261 -1 299 313 188 16 chr3 12280031 12280287 -205756871 - L2 LINE L2 -86 3186 2887 335 207 283 24 chr3 12280591 12280726 -205756432 + MIR3 SINE MIR 12 183 -25 202 239 30 0 chr3 12281436 12281523 -205755635 - MIR SINE MIR -84 124 82 442 260 192 23 chr3 12282058 12282230 -205754928 + MIR SINE MIR 21 212 -50 26 74 0 0 chr3 12282338 12282392 -205754766 + AT_rich Low_complexity Low_complexity 1 54 0 1430 204 95 41 chr3 12282515 12282833 -205754325 - MLT1C LTR MaLR 0 467 117 2155 138 0 28 chr3 12282833 12283153 -205754005 - AluJb SINE Alu -1 311 1 1430 204 95 41 chr3 12283153 12283276 -205753882 - MLT1C LTR MaLR -350 117 2 236 370 65 5 chr3 12284183 12284367 -205752791 - L2 LINE L2 -79 3193 2999 192 276 114 9 chr3 12284366 12284471 -205752687 + L2 LINE L2 2897 3012 -260 * 1699 157 134 3 chr3 12284738 12285088 -205752070 + L1MB3 LINE L1 5788 6183 0 281 228 0 38 chr3 12285126 12285205 -205751953 + GA-rich Low_complexity Low_complexity 4 79 0 182 384 0 0 chr3 12285241 12285314 -205751844 - MIR SINE MIR -7 255 183 210 215 161 43 chr3 12285481 12285574 -205751584 - MIR SINE MIR -50 212 109 409 321 60 30 chr3 12285984 12286152 -205751006 + L2 LINE L2 3097 3269 -3 414 348 41 37 chr3 12286557 12286638 -205750520 + MIR SINE MIR 13 92 -170 2227 122 0 0 chr3 12286638 12286933 -205750225 - AluSg SINE Alu -15 295 1 414 348 41 37 chr3 12286933 12287095 -205750063 + MIR SINE MIR 92 257 -5 265 301 14 0 chr3 12287127 12287200 -205749958 + MER103 DNA DNA 90 163 -3 2308 152 56 12 chr3 12287232 12287640 -205749518 - MSTB LTR MaLR 0 426 1 486 291 66 22 chr3 12287850 12288032 -205749126 - L2 LINE L2 -3 3310 3121 262 210 51 65 chr3 12288053 12288191 -205748967 - L2 LINE L2 -331 2982 2847 1182 289 57 28 chr3 12288483 12288699 -205748459 + MLT1K LTR MaLR 4 212 -264 2068 146 3 0 chr3 12288699 12289007 -205748151 + AluJb SINE Alu 1 309 -3 1182 289 57 28 chr3 12289007 12289250 -205747908 + MLT1K LTR MaLR 212 476 0 273 279 125 10 chr3 12289277 12289381 -205747777 - MIR SINE MIR -69 139 24 629 269 203 9 chr3 12289990 12290202 -205746956 + MIR SINE MIR 7 259 -3 269 238 159 0 chr3 12290520 12290615 -205746543 - MIR SINE MIR -95 113 13 209 361 0 14 chr3 12290594 12290666 -205746492 + L2 LINE L2 3219 3289 -24 * 207 321 69 50 chr3 12291505 12291664 -205745494 - L3 LINE CR1 -20 1557 1396 416 281 81 24 chr3 12291724 12291898 -205745260 + MIR SINE MIR 19 209 -53 1477 226 118 19 chr3 12292041 12292509 -205744649 - MLT1E2 LTR MaLR -1 625 112 260 253 53 21 chr3 12292509 12292604 -205744554 + MLT1C LTR MaLR 1 98 -369 2274 129 0 3 chr3 12292606 12292916 -205744242 + AluSx SINE Alu 1 309 -3 27 0 0 0 chr3 12292945 12292972 -205744186 + AT_rich Low_complexity Low_complexity 1 27 0 971 201 104 44 chr3 12292972 12293336 -205743822 + MLT1C LTR MaLR 82 467 0 2074 128 0 28 chr3 12293352 12293672 -205743486 - AluJo SINE Alu -1 311 1 302 209 200 12 chr3 12293672 12293763 -205743395 - MLT1D LTR MaLR -406 99 8 303 244 23 122 chr3 12294014 12294186 -205742972 + MIR SINE MIR 107 261 -1 238 234 129 53 chr3 12294213 12294384 -205742774 + L1ME4a LINE L1 5932 6115 -6 288 0 0 0 chr3 12294482 12294514 -205742644 + (CA)n Simple_repeat Simple_repeat 2 33 0 437 253 99 31 chr3 12295012 12295174 -205741984 + MIR SINE MIR 1 173 -89 181 273 0 73 chr3 12295304 12295359 -205741799 - L2 LINE L2 -85 3187 3137 376 69 48 18 chr3 12295725 12295793 -205741365 + AluSq/x SINE Alu 76 137 -165 1798 147 22 56 chr3 12296228 12296548 -205740610 - AluJo SINE Alu 0 312 4 189 374 148 30 chr3 12296814 12297180 -205739978 + L2 LINE L2 2853 3261 -11 283 365 41 14 chr3 12297202 12297347 -205739811 - MIR SINE MIR -15 247 99 2272 48 0 0 chr3 12297682 12297955 -205739203 - L1PA7 LINE L1 -5 6149 5877 280 207 0 0 chr3 12298802 12298860 -205738298 + L1ME3A LINE L1 6102 6159 -11 357 254 105 0 chr3 12299098 12299212 -205737946 - MIR3 SINE MIR -4 204 79 253 186 0 0 chr3 12300223 12300266 -205736892 - MSTA LTR MaLR -385 43 1 389 264 27 0 chr3 12300305 12300415 -205736743 + MER117 DNA MER1_type 1 113 -84 239 298 123 18 chr3 12300466 12300580 -205736578 - MIR3 SINE MIR -48 160 35 650 263 72 16 chr3 12300634 12300828 -205736330 - MIR SINE MIR -1 261 57 264 308 39 10 chr3 12301631 12301735 -205735423 + L2 LINE L2 2951 3057 -215 231 149 0 21 chr3 12302010 12302057 -205735101 + L1ME4a LINE L1 6073 6118 -3 553 287 114 59 chr3 12302210 12302400 -205734758 - L2 LINE L2 -191 3081 2903 2609 157 31 2 chr3 12302400 12302815 -205734343 + MSTA LTR MaLR 1 427 -1 553 287 114 59 chr3 12302815 12302838 -205734320 - L2 LINE L2 -369 2903 2883 3037 176 25 68 chr3 12302838 12303470 -205733688 + MER77 LTR ERV1 1 605 0 553 287 114 59 chr3 12303470 12303932 -205733226 - L2 LINE L2 -389 2883 2370 625 262 140 4 chr3 12304939 12305168 -205731990 + MIR SINE MIR 3 262 0 472 276 115 13 chr3 12305307 12305463 -205731695 - MIR3 SINE MIR -22 186 15 478 202 19 0 chr3 12305539 12305643 -205731515 + LTR16A1 LTR ERVL 18 123 -334 1610 200 17 3 chr3 12305686 12306031 -205731127 + MER63B DNA MER1_type 1 350 -86 680 262 56 25 chr3 12306103 12306389 -205730769 + LTR16A1 LTR ERVL 158 452 -5 2031 162 0 0 chr3 12306389 12306698 -205730460 + AluJo SINE Alu 1 309 -3 222 194 32 16 chr3 12307183 12307245 -205729913 + T-rich Low_complexity Low_complexity 2 64 0 238 176 0 0 chr3 12307247 12307298 -205729860 - L1MB3 LINE L1 -1 6182 6132 228 335 68 0 chr3 12307310 12307501 -205729657 - MER113 DNA MER1_type? -313 208 5 469 293 29 7 chr3 12307501 12307641 -205729517 - MIR3 SINE MIR -51 157 15 248 333 37 9 chr3 12308075 12308183 -205728975 + MIR SINE MIR 43 153 -109 210 263 200 27 chr3 12308262 12308410 -205728748 - MIR SINE MIR -62 200 22 274 150 50 0 chr3 12308571 12308631 -205728527 + MER103 DNA DNA 93 155 -11 542 245 148 0 chr3 12309174 12309329 -205727829 + MER45A DNA AcHobo 1 178 0 325 205 167 39 chr3 12309334 12309412 -205727746 + L2 LINE L2 3147 3234 -38 405 310 136 11 chr3 12310180 12310364 -205726794 - L1ME4a LINE L1 -225 5896 5690 195 316 84 21 chr3 12311057 12311152 -205726006 - L2 LINE L2 -1 3312 3212 562 287 75 11 chr3 12311429 12311603 -205725555 + MER5A DNA MER1_type 2 186 -3 476 224 48 40 chr3 12312544 12312669 -205724489 - MIR SINE MIR -7 255 130 404 306 135 12 chr3 12313519 12313771 -205723387 + LTR16A LTR ERVL 55 337 -113 376 226 54 0 chr3 12314003 12314096 -205723062 + MIR SINE MIR 47 144 -64 538 258 65 97 chr3 12314197 12314476 -205722682 + L2 LINE L2 3002 3271 -1 215 222 0 0 chr3 12314567 12314603 -205722555 - MIR SINE MIR -71 191 156 1571 174 32 9 chr3 12315854 12316170 -205720988 - MER33 DNA MER1_type 0 324 2 2594 143 22 4 chr3 12316405 12316859 -205720299 + L1MB3 LINE L1 5707 6168 -15 585 298 76 25 chr3 12316920 12317118 -205720040 - MIR SINE MIR -37 225 18 1488 273 48 36 chr3 12317130 12317718 -205719440 + L2 LINE L2 2718 3311 -2 266 257 48 67 chr3 12317722 12317749 -205719409 - MIR SINE MIR -61 201 175 516 243 27 0 chr3 12317749 12317860 -205719298 + MER81 DNA DNA 1 114 0 266 257 48 67 chr3 12317860 12317937 -205719221 - MIR SINE MIR -87 175 99 243 365 139 0 chr3 12318029 12318187 -205718971 + MIR SINE MIR 8 180 -62 1033 257 5 21 chr3 12318196 12318597 -205718561 - LTR16A LTR ERVL 0 450 16 355 283 115 37 chr3 12319449 12319640 -205717518 + MIR SINE MIR 23 228 -34 337 313 55 50 chr3 12319915 12320116 -205717042 + L1MC4a LINE L1 5135 5336 -810 531 319 52 19 chr3 12320129 12320546 -205716612 + L1MC4a LINE L1 5394 5799 -322 * 2135 215 19 24 chr3 12320503 12321038 -205716120 + L1MB7 LINE L1 5639 6170 -14 998 177 27 16 chr3 12321045 12321231 -205715927 + AluJo SINE Alu 121 308 -4 2048 133 0 16 chr3 12321258 12321566 -205715592 + AluSx SINE Alu 1 303 -9 1981 157 0 25 chr3 12322372 12322691 -205714467 - AluJo SINE Alu -1 311 1 2261 96 17 0 chr3 12323155 12323448 -205713710 + AluSc SINE Alu 1 298 -11 345 319 124 9 chr3 12323458 12323571 -205713587 + L2 LINE L2 3144 3269 -3 534 337 37 0 chr3 12323652 12323839 -205713319 - MER91A DNA MER1_type -1 195 2 735 279 95 65 chr3 12324249 12324803 -205712355 + L2 LINE L2 2594 3189 -124 327 49 0 0 chr3 12324832 12324873 -205712285 + (CA)n Simple_repeat Simple_repeat 2 42 0 483 281 58 18 chr3 12324997 12325168 -205711990 - MIR SINE MIR -57 205 28 332 285 133 30 chr3 12326009 12326174 -205710984 - MIR3 SINE MIR -9 199 18 2868 163 16 12 chr3 12326201 12326704 -205710454 + MLT2B3 LTR ERVL 3 507 -47 252 279 0 0 chr3 12326706 12326767 -205710391 + (CA)n Simple_repeat Simple_repeat 2 62 0 247 125 71 54 chr3 12326767 12326823 -205710335 + MLT2B3 LTR ERVL 464 520 0 397 306 29 18 chr3 12326965 12327135 -205710023 + MER20B DNA MER1_type 8 179 -604 259 300 38 0 chr3 12327367 12327447 -205709711 - MIR SINE MIR -118 144 62 2163 208 22 7 chr3 12327450 12327912 -205709246 + L1MB3 LINE L1 5715 6183 0 180 0 0 0 chr3 12328327 12328347 -205708811 + (CACAC)n Simple_repeat Simple_repeat 1 20 0 404 281 103 27 chr3 12328707 12328853 -205708305 + L3 LINE CR1 967 1123 -454 393 216 27 0 chr3 12329179 12329290 -205707868 - MER117 DNA MER1_type -83 114 1 2255 123 0 16 chr3 12329314 12329686 -205707472 - AluSx SINE Alu 0 367 1 800 166 93 7 chr3 12329657 12329686 -205707472 - AluJo SINE Alu -148 164 139 278 49 0 24 chr3 12329686 12329727 -205707431 + (TTTTA)n Simple_repeat Simple_repeat 3 42 0 837 144 0 0 chr3 12329730 12329848 -205707310 - FLAM_C SINE Alu -15 118 1 421 300 232 9 chr3 12329851 12330084 -205707074 + L3 LINE CR1 1244 1528 -49 3060 135 4 21 chr3 12330234 12330283 -205706875 + L1MA4 LINE L1 5784 5832 -468 2103 108 40 3 chr3 12330283 12330580 -205706578 + AluY SINE Alu 1 308 -3 3060 135 4 21 chr3 12330580 12331044 -205706114 + L1MA4 LINE L1 5832 6293 -7 187 266 47 16 chr3 12331398 12331462 -205705696 + L3 LINE CR1 650 715 -862 1522 165 0 22 chr3 12331976 12332249 -205704909 + AluJo SINE Alu 15 281 -31 26 30 0 0 chr3 12332258 12332291 -205704867 + AT_rich Low_complexity Low_complexity 1 33 0 298 257 124 26 chr3 12332719 12332832 -205704326 + MLT1K LTR MaLR 128 251 -337 228 291 18 45 chr3 12333126 12333236 -205703922 + LTR67 LTR ERVL 447 553 -4 1128 229 5 0 chr3 12333814 12334019 -205703139 + MER58A DNA MER1_type 1 206 -18 377 279 118 0 chr3 12334080 12334216 -205702942 + MER103 DNA DNA 14 165 -1 305 258 129 8 chr3 12336045 12336177 -205700981 + L3 LINE CR1 1230 1377 -200 936 265 73 34 chr3 12336439 12336767 -205700391 - MER102b DNA MER1_type 0 341 1 450 248 71 71 chr3 12337033 12337231 -205699927 - L3 LINE CR1 -5 1572 1375 688 240 67 19 chr3 12337231 12337439 -205699719 - L3 LINE CR1 -561 1016 799 947 252 75 69 chr3 12337705 12338023 -205699135 - MER102b DNA MER1_type -10 331 12 672 265 112 19 chr3 12338084 12338299 -205698859 - MIR SINE MIR 0 262 28 560 273 13 27 chr3 12338928 12339078 -205698080 - Charlie8 DNA MER1_type -2174 243 96 2727 13 0 3 chr3 12339493 12339804 -205697354 + AluYb8 SINE Alu 1 310 -8 467 274 233 5 chr3 12340608 12340804 -205696354 - MIR SINE MIR 0 262 23 830 271 54 4 chr3 12340817 12341057 -205696101 - MIR SINE MIR -2 260 9 389 269 167 21 chr3 12341060 12341246 -205695912 - L3 LINE CR1 -858 719 507 1547 161 57 10 chr3 12341302 12341600 -205695558 + AluJo SINE Alu 1 312 0 237 319 149 35 chr3 12342321 12342462 -205694696 - L2 LINE L2 -25 3247 3091 323 260 102 68 chr3 12342524 12342701 -205694457 - MIR SINE MIR -70 192 10 231 88 0 0 chr3 12343236 12343270 -205693888 + (CA)n Simple_repeat Simple_repeat 2 35 0 557 172 11 132 chr3 12343407 12343581 -205693577 - MER5A DNA MER1_type -34 155 3 533 250 88 29 chr3 12343808 12344012 -205693146 - MIR SINE MIR -8 254 39 217 213 0 24 chr3 12344536 12344616 -205692542 + L2 LINE L2 3137 3309 -4 208 323 129 0 chr3 12346202 12346326 -205690832 + MIR SINE MIR 2 141 -121 510 227 8 59 chr3 12346349 12346468 -205690690 - L2 LINE L2 0 3313 3201 209 152 0 0 chr3 12346555 12346588 -205690570 - MER91B DNA MER1_type -127 63 31 234 296 0 26 chr3 12346595 12346710 -205690448 - L2 LINE L2 -119 3194 3083 * 264 221 78 39 chr3 12346707 12346784 -205690374 + MIR SINE MIR 169 248 -14 317 281 53 9 chr3 12346797 12346911 -205690247 - MIR SINE MIR -64 198 80 230 351 54 12 chr3 12347213 12347381 -205689777 - L2 LINE L2 -225 3047 2873 293 244 67 22 chr3 12348852 12348942 -205688216 - MER20B DNA MER1_type -604 179 86 353 371 84 6 chr3 12349716 12349883 -205687275 + L2 LINE L2 3078 3257 -15 2212 110 7 0 chr3 12349889 12350197 -205686961 + AluSg SINE Alu 1 310 0 1632 232 8 19 chr3 12350358 12350725 -205686433 - MLT1A2 LTR MaLR -11 363 1 356 233 123 0 chr3 12350908 12350981 -205686177 - MIR SINE MIR -158 104 23 538 240 44 35 chr3 12351855 12352066 -205685092 + MIR SINE MIR 1 212 -50 1050 279 75 19 chr3 12352161 12352574 -205684584 + MLT1K LTR MaLR 39 474 -114 495 184 0 44 chr3 12352715 12352829 -205684329 - L1MB8 LINE L1 0 6178 6070 744 137 22 38 chr3 12352852 12353035 -205684123 + CT-rich Low_complexity Low_complexity 1 180 0 202 182 0 0 chr3 12353035 12353068 -205684090 + polypyrimidine Low_complexity Low_complexity 4 36 0 1606 204 47 40 chr3 12353068 12353081 -205684077 - L1MB5 LINE L1 -101 6073 6062 1678 160 13 26 chr3 12353081 12353388 -205683770 - AluJo SINE Alu -9 303 1 1606 204 47 40 chr3 12353388 12353799 -205683359 - L1MB5 LINE L1 -112 6062 5650 512 358 23 23 chr3 12354644 12354904 -205682254 + MIR SINE MIR 1 260 -2 465 100 43 0 chr3 12355417 12355487 -205681671 - MSTB LTR MaLR -5 427 355 543 171 135 9 chr3 12355487 12355598 -205681560 + FLAM_C SINE Alu 5 129 -14 1540 171 122 0 chr3 12355600 12355887 -205681271 - MSTB LTR MaLR -68 358 37 265 333 101 32 chr3 12355921 12356110 -205681048 - MIR SINE MIR -40 222 21 198 194 0 90 chr3 12356293 12356360 -205680798 - MIR SINE MIR -143 119 59 287 233 83 30 chr3 12356751 12356884 -205680274 + L1ME4a LINE L1 5910 6049 -72 * 1024 180 29 57 chr3 12356881 12356960 -205680198 + L1MB2 LINE L1 5933 6013 -158 2390 74 0 3 chr3 12356960 12357272 -205679886 - AluY SINE Alu 0 311 1 1024 180 29 57 chr3 12357272 12357437 -205679721 + L1MB2 LINE L1 6013 6170 -1 428 359 50 39 chr3 12357515 12357796 -205679362 + L2 LINE L2 2827 3110 -162 2933 110 17 5 chr3 12357853 12358271 -205678887 + MSTA LTR MaLR 5 427 -1 908 77 8 0 chr3 12358718 12358835 -205678323 + MER20 DNA MER1_type 30 147 -72 904 283 93 51 chr3 12358835 12359414 -205677744 - L2 LINE L2 -50 3263 2639 1243 158 38 0 chr3 12359414 12359623 -205677535 + MER20 DNA MER1_type 3 219 0 904 283 93 51 chr3 12359623 12359741 -205677417 - L2 LINE L2 -674 2639 2527 2028 133 0 0 chr3 12360567 12360861 -205676297 + AluSx SINE Alu 1 294 -18 270 331 88 0 chr3 12361442 12361590 -205675568 - MER103 DNA DNA -5 161 1 284 223 138 43 chr3 12362024 12362118 -205675040 - L2 LINE L2 -8 3305 3203 239 313 0 12 chr3 12362140 12362220 -205674938 + MIR3 SINE MIR 98 176 -32 394 319 40 12 chr3 12362524 12362690 -205674468 + MIR SINE MIR 35 204 -58 1594 166 27 114 chr3 12363096 12363267 -205673891 + MLT1A2 LTR MaLR 4 121 -253 1718 151 10 13 chr3 12363267 12363571 -205673587 + AluJb SINE Alu 3 305 -7 1594 166 27 114 chr3 12363571 12363803 -205673355 + MLT1A2 LTR MaLR 121 372 -2 1977 113 0 0 chr3 12363830 12364133 -205673025 + AluSx SINE Alu 7 309 0 1899 160 7 0 chr3 12364163 12364456 -205672702 - AluJo SINE Alu -17 295 1 318 303 96 53 chr3 12364493 12364816 -205672342 - L2 LINE L2 -42 3230 2894 2243 105 0 0 chr3 12364825 12365120 -205672038 + AluSx SINE Alu 2 296 -16 748 241 113 55 chr3 12365262 12365536 -205671622 + Charlie8 DNA MER1_type 1 275 -2142 638 386 39 19 chr3 12366040 12366403 -205670755 + L3 LINE CR1 66 435 -1142 405 296 70 14 chr3 12366427 12366569 -205670589 + L3 LINE CR1 968 1117 -460 630 224 46 33 chr3 12366610 12366762 -205670396 + Charlie8 DNA MER1_type 123 276 -2141 552 220 58 94 chr3 12366993 12367113 -205670045 + L3 LINE CR1 1265 1375 -202 1981 143 0 0 chr3 12367113 12367413 -205669745 + AluSx SINE Alu 1 300 -12 552 220 58 94 chr3 12367413 12367515 -205669643 + L3 LINE CR1 1375 1479 -98 358 247 75 58 chr3 12368007 12368181 -205668977 + MIR SINE MIR 84 260 -2 26 0 0 0 chr3 12368613 12368639 -205668519 + AT_rich Low_complexity Low_complexity 1 26 0 233 262 0 8 chr3 12370750 12370872 -205666286 + (CA)n Simple_repeat Simple_repeat 1 121 0 727 306 43 25 chr3 12371605 12371929 -205665229 - MLT1K LTR MaLR -220 368 39 538 240 44 35 chr3 12372024 12372235 -205664923 - MIR SINE MIR -50 212 1 356 233 123 0 chr3 12373110 12373183 -205663975 + MIR SINE MIR 23 104 -158 1632 232 8 19 chr3 12373366 12373733 -205663425 + MLT1A2 LTR MaLR 1 363 -11 2193 114 7 0 chr3 12373894 12374202 -205662956 - AluSg SINE Alu 0 310 1 600 361 104 27 chr3 12374208 12374807 -205662351 - L2 LINE L2 -15 3257 2570 353 341 61 30 chr3 12374962 12375323 -205661835 + L2 LINE L2 2566 2937 -377 1398 158 3 92 chr3 12375480 12375808 -205661350 - AluJo SINE Alu -13 299 1 809 224 6 0 chr3 12375875 12376040 -205661118 + MER3 DNA MER1_type 7 125 -84 29421 97 8 55 chr3 12376048 12382590 -205654568 + L1PA7 LINE L1 1 6154 0 399 274 80 0 chr3 12382640 12382753 -205654405 + L2 LINE L2 3191 3312 -1 203 125 21 21 chr3 12382835 12382883 -205654275 + T-rich Low_complexity Low_complexity 1 48 0 180 0 0 0 chr3 12383118 12383138 -205654020 + (TCC)n Simple_repeat Simple_repeat 2 21 0 181 342 39 32 chr3 12384039 12384194 -205652964 - MIR SINE MIR -13 249 94 386 217 17 43 chr3 12384216 12384331 -205652827 + MLT1E LTR MaLR 283 394 -199 1009 174 73 108 chr3 12384331 12384754 -205652404 + MLT1A2 LTR MaLR 1 390 0 858 204 0 58 chr3 12384762 12384968 -205652190 + MLT1E LTR MaLR 400 593 0 326 227 59 59 chr3 12385203 12385322 -205651836 + MIR3 SINE MIR 5 123 -85 376 150 25 0 chr3 12386077 12386157 -205651001 + GA-rich Low_complexity Low_complexity 3 84 0 750 207 95 0 chr3 12386170 12386339 -205650819 - MER5A DNA MER1_type -4 185 1 1181 217 34 0 chr3 12386528 12386791 -205650367 + L1ME2 LINE L1 5893 6164 0 221 148 19 37 chr3 12386825 12386879 -205650279 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 2021 133 3 3 chr3 12387264 12387565 -205649593 + AluSx SINE Alu 1 301 -11 452 279 97 20 chr3 12387565 12387883 -205649275 + LTR16A LTR ERVL 75 444 -6 3774 153 29 43 chr3 12388449 12389211 -205647947 - L1MB3 LINE L1 -2 6181 5431 1979 129 3 17 chr3 12389211 12389505 -205647653 - MER1B DNA MER1_type -4 335 46 2922 183 16 11 chr3 12389518 12390178 -205646980 - L1MB3 LINE L1 -736 5444 4779 332 349 39 0 chr3 12390252 12390381 -205646777 + L2 LINE L2 3125 3258 -14 333 239 0 0 chr3 12390602 12390673 -205646485 - LTR1B LTR ERV1 -81 745 675 382 260 20 0 chr3 12390787 12390887 -205646271 - MIR SINE MIR -5 257 156 235 271 82 0 chr3 12390976 12391061 -205646097 - MIR SINE MIR -53 209 118 242 297 68 8 chr3 12391359 12391477 -205645681 + L2 LINE L2 3143 3267 -5 224 271 24 0 chr3 12392119 12392204 -205644954 - MIR SINE MIR -15 247 161 715 273 32 10 chr3 12392245 12392524 -205644634 - LTR16B LTR ERVL -2 462 88 191 0 0 94 chr3 12392573 12392605 -205644553 + (T)n Simple_repeat Simple_repeat 1 29 0 7455 50 0 3 chr3 12392619 12393959 -205643199 - L1PA6 LINE L1 0 6154 4820 2000 132 0 4 chr3 12394185 12394466 -205642692 - AluJb SINE Alu -15 297 18 1206 119 0 23 chr3 12394567 12394612 -205642546 - AluSq SINE Alu -136 177 133 2325 93 16 7 chr3 12394612 12394922 -205642236 - AluSq SINE Alu 0 313 1 1206 119 0 23 chr3 12394922 12395053 -205642105 - AluSq SINE Alu -180 133 5 25 0 0 0 chr3 12395116 12395141 -205642017 + AT_rich Low_complexity Low_complexity 1 25 0 1469 160 95 0 chr3 12395149 12395412 -205641746 + AluJb SINE Alu 1 288 -24 194 305 62 23 chr3 12396519 12396647 -205640511 - L2 LINE L2 -1293 2021 1889 2249 121 0 0 chr3 12396718 12397025 -205640133 - AluSx SINE Alu -5 307 1 442 264 153 32 chr3 12399071 12399287 -205637871 - MIR SINE MIR -6 256 15 411 213 12 0 chr3 12399287 12399367 -205637791 - MER7A DNA MER2_type 0 336 256 2327 110 0 0 chr3 12399398 12399699 -205637459 + AluSx SINE Alu 1 301 -11 257 206 40 103 chr3 12399714 12399840 -205637318 - MER101 LTR ERV1 -29 445 328 663 243 83 69 chr3 12399887 12400175 -205636983 - MER101B LTR ERV1 -278 292 1 * 1427 142 52 4 chr3 12400175 12400394 -205636764 - MER7A DNA MER2_type -118 228 1 222 286 168 0 chr3 12400571 12400690 -205636468 + MIR SINE MIR 101 239 -23 582 270 155 9 chr3 12400769 12401107 -205636051 + MLT1H LTR MaLR 122 534 -15 245 245 21 21 chr3 12401534 12401628 -205635530 + CT-rich Low_complexity Low_complexity 3 96 0 437 248 39 31 chr3 12401649 12401778 -205635380 + L2 LINE L2 3183 3312 -1 287 187 0 93 chr3 12401765 12401840 -205635318 + MIR SINE MIR 184 251 -11 * 23 68 0 0 chr3 12402230 12402274 -205634884 + AT_rich Low_complexity Low_complexity 1 44 0 260 237 0 26 chr3 12403706 12403782 -205633376 + CT-rich Low_complexity Low_complexity 3 76 0 26 30 0 0 chr3 12404693 12404726 -205632432 + AT_rich Low_complexity Low_complexity 1 33 0 899 196 31 0 chr3 12404748 12404911 -205632247 + AluJb SINE Alu 136 303 -9 677 89 0 0 chr3 12404981 12405071 -205632087 + AluS SINE Alu 2 91 -222 1947 98 0 4 chr3 12405071 12405325 -205631833 + AluSq SINE Alu 54 306 -7 1054 163 11 0 chr3 12405649 12405833 -205631325 + AluJo SINE Alu 121 306 -6 244 164 36 0 chr3 12406513 12406568 -205630590 + G-rich Low_complexity Low_complexity 1 57 0 239 85 17 51 chr3 12406716 12406775 -205630383 + (TTC)n Simple_repeat Simple_repeat 1 57 0 770 196 0 0 chr3 12406794 12406927 -205630231 - FLAM_C SINE Alu 0 133 1 1023 236 115 55 chr3 12407049 12407193 -205629965 - L2 LINE L2 0 3313 3179 2142 109 7 0 chr3 12407193 12407478 -205629680 - AluSx SINE Alu -15 297 11 1023 236 115 55 chr3 12407478 12407499 -205629659 - L2 LINE L2 -134 3179 3161 2000 119 48 14 chr3 12407499 12407794 -205629364 - AluSx SINE Alu -7 305 1 1023 236 115 55 chr3 12407794 12408179 -205628979 - L2 LINE L2 -152 3161 2707 1831 169 0 22 chr3 12408179 12408498 -205628660 - AluJo SINE Alu 0 312 1 1023 236 115 55 chr3 12408498 12408545 -205628613 - L2 LINE L2 -606 2707 2664 2290 90 0 13 chr3 12408744 12409077 -205628081 + AluSx SINE Alu 1 312 0 1599 231 12 6 chr3 12409439 12409777 -205627381 + MER58B DNA MER1_type 1 340 -1 2308 112 0 0 chr3 12410017 12410313 -205626845 - AluSx SINE Alu -16 296 1 513 306 92 54 chr3 12410320 12410876 -205626282 - MLT1L LTR MaLR 0 615 39 302 324 29 0 chr3 12411028 12411133 -205626025 + MIR SINE MIR 42 149 -59 234 240 0 0 chr3 12411241 12411291 -205625867 + L2 LINE L2 3264 3313 0 1820 159 14 0 chr3 12411327 12411622 -205625536 - AluJb SINE Alu -13 299 1 313 235 79 107 chr3 12411880 12412287 -205624871 - MLT1H LTR MaLR -14 535 11 308 286 38 23 chr3 12412842 12413009 -205624149 - HAL1b LINE L1 -2 6119 1222 2287 108 0 0 chr3 12413040 12413328 -205623830 - AluSx SINE Alu -24 288 1 228 235 86 0 chr3 12413349 12413430 -205623728 - L1ME LINE L1 -365 5797 5710 702 174 0 0 chr3 12413929 12414038 -205623120 + FLAM_C SINE Alu 2 110 -33 222 274 47 105 chr3 12414118 12414308 -205622850 + MIR SINE MIR 76 254 -8 1218 181 185 8 chr3 12415231 12415490 -205621668 - AluSg1 SINE Alu -4 305 1 198 0 0 0 chr3 12415746 12415768 -205621390 + (TTA)n Simple_repeat Simple_repeat 2 23 0 2296 114 0 0 chr3 12415770 12416076 -205621082 - AluSx SINE Alu -6 306 1 728 142 40 114 chr3 12416934 12417016 -205620142 - MER46A DNA MER2_type -2522 209 145 2336 96 3 0 chr3 12417016 12417319 -205619839 - AluSg SINE Alu -6 304 1 728 142 40 114 chr3 12417319 12417412 -205619746 - MER46A DNA MER2_type -2586 145 47 374 220 50 40 chr3 12417729 12417829 -205619329 + L2 LINE L2 3168 3268 -4 358 303 86 13 chr3 12417837 12417989 -205619169 - MIR SINE MIR -50 212 50 285 266 64 37 chr3 12419234 12419343 -205617815 - MIR3 SINE MIR -92 116 5 291 264 0 0 chr3 12419620 12419692 -205617466 - MER34 LTR ERV1 -469 73 2 * 1492 159 172 99 chr3 12419692 12420057 -205617101 - MER21A LTR ERV1 -530 401 9 917 148 10 91 chr3 12420057 12420208 -205616950 - L1MB7 LINE L1 -354 5830 5699 1707 188 3 0 chr3 12420208 12420500 -205616658 - AluJo SINE Alu -17 295 3 917 148 10 91 chr3 12420500 12420557 -205616601 - L1MB7 LINE L1 -485 5699 5639 484 198 0 0 chr3 12420560 12420641 -205616517 - Tigger5 DNA MER2_type 0 2323 2243 340 182 0 0 chr3 12420654 12420709 -205616449 - Tigger5 DNA MER2_type -2268 55 1 1185 169 59 72 chr3 12420710 12420781 -205616377 - L1MB7 LINE L1 -538 5636 5566 1997 161 14 30 chr3 12420781 12421142 -205616016 - THE1A LTR MaLR 0 355 1 1185 169 59 72 chr3 12421142 12421377 -205615781 - L1MB7 LINE L1 -608 5566 5327 1796 183 3 7 chr3 12421377 12421677 -205615481 - AluJb SINE Alu -13 299 1 1185 169 59 72 chr3 12421677 12421742 -205615416 - L1MB7 LINE L1 -847 5327 5263 4037 169 20 6 chr3 12421783 12422436 -205614722 + MER72 LTR ERV1 1 662 -60 2066 146 20 0 chr3 12422436 12422737 -205614421 - AluSx SINE Alu -5 307 1 2330 107 0 0 chr3 12422764 12423062 -205614096 - AluSg SINE Alu -12 298 1 232 250 0 0 chr3 12423286 12423342 -205613816 - L1MC/D LINE L1 -1876 5932 5877 1371 168 71 27 chr3 12423350 12423431 -205613727 - Tigger4(Zombi) DNA MER2_type 0 2731 2655 2142 139 0 0 chr3 12423431 12423740 -205613418 + AluSg SINE Alu 1 309 -1 1371 168 71 27 chr3 12423740 12423995 -205613163 - Tigger4(Zombi) DNA MER2_type -76 2655 2 347 229 122 15 chr3 12424031 12424162 -205612996 - L1MC/D LINE L1 -309 5812 5668 235 231 31 31 chr3 12424402 12424467 -205612691 - HAL1b LINE L1 -444 904 840 354 241 27 9 chr3 12424594 12424706 -205612452 - HAL1b LINE L1 -552 796 683 320 277 54 0 chr3 12424736 12424848 -205612310 - HAL1b LINE L1 -787 561 444 1893 181 0 3 chr3 12424855 12425148 -205612010 - AluJb SINE Alu -20 292 1 1400 137 4 26 chr3 12425148 12425381 -205611777 - MER2 DNA MER2_type -107 238 11 531 273 148 14 chr3 12426046 12426255 -205610903 + MIR SINE MIR 14 250 -12 1861 132 15 4 chr3 12426280 12426552 -205610606 - AluSg SINE Alu -13 297 23 510 120 0 13 chr3 12426794 12426869 -205610289 + MER39B LTR ERV1 557 630 -23 2551 146 27 50 chr3 12426880 12427324 -205609834 + MER21A LTR ERV1 495 928 -3 1263 200 20 84 chr3 12427324 12427640 -205609518 + L1MB7 LINE L1 5827 6119 -65 1743 114 0 0 chr3 12427640 12427868 -205609290 + AluSg/x SINE Alu 73 300 -10 1263 200 20 84 chr3 12427868 12427906 -205609252 + L1MB7 LINE L1 6119 6158 -26 478 181 11 0 chr3 12428009 12428103 -205609055 + MER113 DNA MER1_type? 188 282 -239 509 209 0 0 chr3 12428200 12428286 -205608872 + FLAM_A SINE Alu 1 86 -56 563 110 37 209 chr3 12428289 12428452 -205608706 + L1MB5 LINE L1 5832 5966 -208 1742 142 67 0 chr3 12428492 12428760 -205608398 - AluJb SINE Alu -26 286 1 915 221 69 86 chr3 12428829 12428976 -205608182 - MER39 LTR ERV1 -19 688 540 513 0 0 0 chr3 12428976 12429033 -205608125 + (TG)n Simple_repeat Simple_repeat 2 58 0 1575 184 14 28 chr3 12429033 12429321 -205607837 - AluJo SINE Alu -28 284 1 915 221 69 86 chr3 12429321 12429362 -205607796 - MER39 LTR ERV1 -166 541 501 730 179 0 30 chr3 12429362 12429496 -205607662 - FLAM_A SINE Alu -2 131 2 915 221 69 86 chr3 12429496 12429839 -205607319 - MER39 LTR ERV1 -206 501 1 274 306 12 0 chr3 12429959 12430044 -205607114 - MER97b DNA MER1_type? -874 179 94 4891 142 45 44 chr3 12430218 12430294 -205606864 + Charlie1a DNA MER1_type 1 75 -2686 1910 171 3 10 chr3 12430294 12430599 -205606559 - AluJb SINE Alu -9 303 1 4891 142 45 44 chr3 12430599 12431063 -205606095 + Charlie1a DNA MER1_type 75 537 -2224 1531 183 78 46 chr3 12431063 12431473 -205605685 + LTR37A LTR ERV1 4 426 0 4891 142 45 44 chr3 12431473 12431906 -205605252 + Charlie1a DNA MER1_type 537 968 -1793 1992 120 3 19 chr3 12431906 12432214 -205604944 + AluSx SINE Alu 1 303 -9 4891 142 45 44 chr3 12432214 12432366 -205604792 + Charlie1a DNA MER1_type 968 1118 -1643 2262 103 30 0 chr3 12432366 12432666 -205604492 + AluSx SINE Alu 1 309 -3 4891 142 45 44 chr3 12432666 12433015 -205604143 + Charlie1a DNA MER1_type 1118 1451 -4 226 319 92 50 chr3 12433163 12433182 -205603976 - MIR SINE MIR 0 262 245 1931 135 25 0 chr3 12433182 12433480 -205603678 + AluSx SINE Alu 1 305 0 226 319 92 50 chr3 12433480 12433574 -205603584 - MIR SINE MIR -17 245 156 258 32 0 0 chr3 12433574 12433605 -205603553 + (TAA)n Simple_repeat Simple_repeat 3 33 0 226 319 92 50 chr3 12433605 12433727 -205603431 - MIR SINE MIR -106 156 15 190 304 72 14 chr3 12433750 12433819 -205603339 + MIR3 SINE MIR 82 154 -54 2355 89 0 3 chr3 12435335 12435638 -205601520 + AluSg SINE Alu 1 302 -8 455 250 93 63 chr3 12435813 12436022 -205601136 + MLT1K LTR MaLR 40 326 -262 734 148 139 0 chr3 12436040 12436155 -205601003 - AluSp SINE Alu -46 267 137 463 180 180 23 chr3 12436217 12436389 -205600769 + MLT1K LTR MaLR 378 576 -12 275 258 186 16 chr3 12436395 12436519 -205600639 - MIR3 SINE MIR -75 133 3 185 235 222 0 chr3 12436659 12436740 -205600418 - MIR SINE MIR -108 154 56 1945 180 11 22 chr3 12436987 12437342 -205599816 - MLT1A1 LTR MaLR 0 365 15 1042 177 0 6 chr3 12437342 12437517 -205599641 - AluSg/x SINE Alu -5 305 132 2241 109 0 26 chr3 12437517 12437830 -205599328 - AluSx SINE Alu -7 305 1 322 234 57 81 chr3 12437857 12437981 -205599177 + MIR SINE MIR 85 205 -57 718 239 56 0 chr3 12438023 12438203 -205598955 - MIR SINE MIR -59 203 14 2254 114 0 3 chr3 12438423 12438722 -205598436 + AluSg SINE Alu 1 298 -12 777 189 0 0 chr3 12439101 12439228 -205597930 - FLAM_C SINE Alu -5 128 2 2268 137 30 35 chr3 12439309 12439675 -205597483 - THE1B LTR MaLR 0 364 1 821 137 0 8 chr3 12441151 12441275 -205595883 + AluJo SINE Alu 12 134 -178 434 287 171 5 chr3 12441326 12441386 -205595772 + MIR SINE MIR 7 56 -206 1755 170 3 10 chr3 12441386 12441675 -205595483 + AluJo SINE Alu 1 287 -25 434 287 171 5 chr3 12441675 12441830 -205595328 + MIR SINE MIR 56 258 -4 919 181 0 0 chr3 12441903 12442052 -205595106 - AluJb SINE Alu -26 286 138 1012 217 58 4 chr3 12442095 12442353 -205594805 - L1ME3 LINE L1 -1 6161 5890 1054 79 0 0 chr3 12442498 12442625 -205594533 + 7SLRNA srpRNA srpRNA 75 201 -119 2198 104 13 7 chr3 12443032 12443330 -205593828 - AluSx SINE Alu -10 302 3 203 239 0 70 chr3 12443716 12443787 -205593371 + MIR SINE MIR 163 228 -34 1960 175 68 0 chr3 12443805 12444131 -205593027 - MER7A DNA MER2_type 0 346 1 230 222 143 0 chr3 12444227 12444290 -205592868 - L2 LINE L2 -1 3312 3241 628 286 38 5 chr3 12444976 12445161 -205591997 + MIR SINE MIR 54 244 -18 180 0 0 0 chr3 12445379 12445399 -205591759 + (TG)n Simple_repeat Simple_repeat 2 21 0 1848 135 18 7 chr3 12445546 12445850 -205591308 - AluSx SINE Alu 0 307 1 22 0 0 0 chr3 12447309 12447331 -205589827 + AT_rich Low_complexity Low_complexity 1 22 0 1757 157 11 0 chr3 12447879 12448165 -205588993 - AluJb SINE Alu -23 289 1 312 326 73 59 chr3 12448268 12448556 -205588602 - L2 LINE L2 -38 3234 2943 28 61 0 0 chr3 12448927 12448976 -205588182 + AT_rich Low_complexity Low_complexity 1 49 0 1639 183 7 10 chr3 12449108 12449403 -205587755 - AluJo SINE Alu -16 296 3 536 240 185 7 chr3 12449534 12449680 -205587478 - MER5A DNA MER1_type 0 189 18 21 0 0 0 chr3 12449826 12449847 -205587311 + AT_rich Low_complexity Low_complexity 1 21 0 2602 57 0 13 chr3 12449933 12450248 -205586910 - AluY SINE Alu 0 311 1 1520 189 23 27 chr3 12450890 12451191 -205585967 - AluJo SINE Alu -12 300 1 2139 117 7 10 chr3 12451789 12452089 -205585069 - AluSx SINE Alu -13 299 1 2071 113 21 0 chr3 12453028 12453310 -205583848 + AluSq SINE Alu 1 288 -25 252 145 133 121 chr3 12455279 12455362 -205581796 + MLT1B LTR MaLR 1 84 -306 182 313 0 62 chr3 12455630 12455694 -205581464 + MIR SINE MIR 36 95 -113 399 184 61 41 chr3 12456704 12456802 -205580356 - Charlie1 DNA MER1_type -255 2506 2407 853 172 77 107 chr3 12456810 12456915 -205580243 - Charlie1 DNA MER1_type -613 2148 2041 1644 126 22 0 chr3 12456915 12457146 -205580012 + AluSx SINE Alu 1 236 -76 853 172 77 107 chr3 12457146 12457301 -205579857 - Charlie1 DNA MER1_type -720 2041 1896 1308 241 100 47 chr3 12457303 12457775 -205579383 - Charlie1 DNA MER1_type -977 1784 1228 1059 198 171 0 chr3 12457775 12458033 -205579125 - MER2 DNA MER2_type 0 345 44 2289 188 202 59 chr3 12458088 12458496 -205578662 - Charlie1 DNA MER1_type -1524 1237 889 1209 208 36 46 chr3 12458496 12458799 -205578359 + AluJo SINE Alu 1 300 -12 2289 188 202 59 chr3 12458799 12459423 -205577735 - Charlie1 DNA MER1_type -1872 889 57 180 278 103 52 chr3 12459650 12459747 -205577411 + L2 LINE L2 2538 2639 -675 249 253 76 13 chr3 12459749 12459828 -205577330 + MIR SINE MIR 62 145 -117 3494 118 135 38 chr3 12459857 12460238 -205576920 - Tigger1 DNA MER2_type 0 2418 2075 1945 133 43 7 chr3 12460238 12460539 -205576619 - AluSx SINE Alu 0 312 1 3494 118 135 38 chr3 12460539 12460815 -205576343 - Tigger1 DNA MER2_type -343 2075 1697 191 167 0 48 chr3 12462070 12462112 -205575046 - MIR SINE MIR -6 256 217 1600 157 34 27 chr3 12462583 12462877 -205574281 + AluJb SINE Alu 1 296 -16 339 164 0 15 chr3 12463442 12463509 -205573649 - Charlie5 DNA MER1_type -2505 107 42 1153 90 131 95 chr3 12464041 12464263 -205572895 + MER30 DNA MER1_type 1 230 0 22 56 0 0 chr3 12468247 12468283 -205568875 + AT_rich Low_complexity Low_complexity 1 36 0 29 0 0 0 chr3 12469385 12469414 -205567744 + AT_rich Low_complexity Low_complexity 1 29 0 280 331 61 25 chr3 12470009 12470172 -205566986 - MIR SINE MIR -91 171 3 837 172 16 123 chr3 12470952 12471196 -205565962 - MER20 DNA MER1_type 0 219 2 335 326 157 54 chr3 12471233 12471622 -205565536 - L2 LINE L2 -16 3256 2828 315 203 0 0 chr3 12471637 12471711 -205565447 + (ATG)n Simple_repeat Simple_repeat 1 74 0 697 257 34 0 chr3 12471712 12471887 -205565271 - MIR SINE MIR -8 254 74 2167 107 17 0 chr3 12471935 12472225 -205564933 - AluSx SINE Alu -17 295 1 446 226 196 98 chr3 12472262 12472463 -205564695 - MLT1H LTR MaLR 0 549 369 2249 110 3 3 chr3 12472463 12472772 -205564386 - AluSc SINE Alu 0 309 1 2325 114 0 0 chr3 12472777 12473083 -205564075 - AluSx SINE Alu -6 306 1 446 226 196 98 chr3 12473083 12473375 -205563783 - MLT1H LTR MaLR -183 366 1 480 305 106 4 chr3 12473577 12473708 -205563450 - MIR SINE MIR -2 260 144 2221 157 12 54 chr3 12473708 12473938 -205563220 - MLT1B LTR MaLR 0 390 183 2248 113 0 0 chr3 12473938 12474239 -205562919 - AluSx SINE Alu -11 301 1 2221 157 12 54 chr3 12474239 12474415 -205562743 - MLT1B LTR MaLR -207 183 1 480 305 106 4 chr3 12474415 12474519 -205562639 - MIR SINE MIR -118 144 1 1624 157 0 0 chr3 12474731 12474973 -205562185 + AluJb SINE Alu 64 305 -7 870 273 66 12 chr3 12475030 12475272 -205561886 - MIR SINE MIR 0 262 8 4748 161 15 6 chr3 12475423 12476236 -205560922 + L1MB3 LINE L1 5364 6183 0 353 211 122 0 chr3 12476283 12476373 -205560785 - HAL1 LINE L1 -2390 117 17 450 0 0 0 chr3 12477111 12477161 -205559997 + (CA)n Simple_repeat Simple_repeat 2 51 0 215 31 31 0 chr3 12477295 12477327 -205559831 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 6629 73 20 0 chr3 12477327 12478367 -205558791 - L1PA13 LINE L1 -12 6151 5143 270 160 0 0 chr3 12478800 12478850 -205558308 + T-rich Low_complexity Low_complexity 1 50 0 1072 181 51 0 chr3 12479513 12479690 -205557468 + MER5A DNA MER1_type 1 186 -3 1051 253 78 38 chr3 12479701 12480199 -205556959 - MER113 DNA MER1_type? 0 521 4 357 24 0 0 chr3 12480215 12480257 -205556901 + (TG)n Simple_repeat Simple_repeat 1 42 0 382 274 30 85 chr3 12480845 12481009 -205556149 + MER112 DNA MER1_type 15 169 -91 348 274 15 99 chr3 12481073 12481274 -205555884 - MER5A DNA MER1_type -4 185 2 425 269 45 6 chr3 12481518 12481674 -205555484 + L1MEd LINE L1 2 163 -5956 2151 119 0 10 chr3 12481739 12482034 -205555124 - AluSx SINE Alu -20 292 1 800 280 121 74 chr3 12482079 12482661 -205554497 + L1MEd LINE L1 265 818 -5311 2022 138 0 7 chr3 12482661 12482959 -205554199 + AluSx SINE Alu 1 296 -16 800 280 121 74 chr3 12482959 12482984 -205554174 + L1MEd LINE L1 818 840 -5289 1975 146 7 7 chr3 12482984 12483285 -205553873 + AluJo SINE Alu 1 301 -11 800 280 121 74 chr3 12483285 12483423 -205553735 + L1MEd LINE L1 840 970 -5159 2208 129 3 3 chr3 12483423 12483733 -205553425 + AluSq SINE Alu 1 310 -3 800 280 121 74 chr3 12483733 12484099 -205553059 + L1MEd LINE L1 970 1433 -4696 1392 188 4 0 chr3 12484099 12484338 -205552820 - L1PB4 LINE L1 -7 6149 5910 800 280 121 74 chr3 12484338 12484545 -205552613 + L1MEd LINE L1 1433 1629 -4500 1912 152 0 3 chr3 12484572 12484874 -205552284 + AluJb SINE Alu 5 305 -7 2408 50 0 0 chr3 12484964 12485245 -205551913 + AluY SINE Alu 6 286 -25 664 171 267 0 chr3 12486366 12486512 -205550646 - MER5A DNA MER1_type -4 185 1 1783 181 3 16 chr3 12487289 12487604 -205549554 + AluJb SINE Alu 1 311 -1 445 261 43 9 chr3 12487808 12487923 -205549235 - MIR SINE MIR -62 200 82 999 266 84 68 chr3 12488740 12488979 -205548179 + MLT1K LTR MaLR 189 438 -150 2982 116 19 7 chr3 12488979 12489400 -205547758 + MSTA LTR MaLR 3 428 0 999 266 84 68 chr3 12489400 12489554 -205547604 + MLT1K LTR MaLR 438 588 0 1276 216 150 41 chr3 12489654 12490111 -205547047 + MLT1G3 LTR MaLR 21 593 0 427 201 223 14 chr3 12490124 12490263 -205546895 + MER117 DNA MER1_type 4 171 -26 2385 117 44 0 chr3 12490329 12490695 -205546463 + L1PA13 LINE L1 5799 6179 0 548 217 255 27 chr3 12490747 12490931 -205546227 + MIR SINE MIR 23 248 -14 2248 117 9 20 chr3 12491126 12491467 -205545691 + MER1B DNA MER1_type 1 337 -2 1926 214 87 37 chr3 12491502 12492040 -205545118 + L1ME1 LINE L1 5600 6164 -2 492 205 73 40 chr3 12492048 12492199 -205544959 + MER103 DNA DNA 11 166 0 234 0 0 0 chr3 12492495 12492521 -205544637 + (CA)n Simple_repeat Simple_repeat 2 27 0 3193 105 16 2 chr3 12492562 12492990 -205544168 - MER57B LTR ERV1 0 434 1 12840 106 91 59 chr3 12492990 12493367 -205543791 - MER57B-int LTR ERV1 0 7537 7174 2421 68 0 3 chr3 12493367 12493662 -205543496 + AluY SINE Alu 1 294 -17 12840 106 91 59 chr3 12493662 12495446 -205541712 - MER57B-int LTR ERV1 -363 7174 5307 6073 130 57 28 chr3 12495437 12497097 -205540061 - MER57B-int LTR ERV1 -1702 4273 2186 * 331 78 59 0 chr3 12497093 12497144 -205540014 - MER57B-int LTR ERV1 -3726 2220 2167 * 4767 150 55 21 chr3 12497120 12498635 -205538523 - MER57B-int LTR ERV1 -4159 2371 288 4346 140 29 6 chr3 12498632 12499289 -205537869 - MER57B-int LTR ERV1 -6865 672 1 * 3043 120 21 2 chr3 12499289 12499715 -205537443 - MER57B LTR ERV1 0 434 1 389 266 0 39 chr3 12499730 12499858 -205537300 + L1ME4a LINE L1 5987 6109 -12 477 237 50 36 chr3 12499911 12500050 -205537108 - MIR SINE MIR -5 257 117 578 235 150 43 chr3 12500255 12500695 -205536463 + MLT1H LTR MaLR 3 555 0 2085 131 3 0 chr3 12500808 12501111 -205536047 - AluSx SINE Alu 0 304 1 22 0 0 0 chr3 12501798 12501820 -205535338 + AT_rich Low_complexity Low_complexity 1 22 0 228 184 0 0 chr3 12502350 12502399 -205534759 + CT-rich Low_complexity Low_complexity 2 50 0 190 301 118 11 chr3 12502524 12502617 -205534541 - L2 LINE L2 -8 3264 3162 32 0 0 0 chr3 12502730 12502762 -205534396 + AT_rich Low_complexity Low_complexity 1 32 0 230 140 53 0 chr3 12502849 12502906 -205534252 + L1MD3 LINE L1 7936 7995 0 342 250 93 9 chr3 12503485 12503593 -205533565 + MIR SINE MIR 64 180 -82 291 194 16 0 chr3 12503663 12503725 -205533433 - Charlie8 DNA MER1_type -1008 1409 1347 533 214 219 16 chr3 12503726 12503913 -205533245 - MLT1A2 LTR MaLR 0 549 325 397 220 83 133 chr3 12503914 12504155 -205533003 - Charlie8 DNA MER1_type -2186 231 3 724 173 0 8 chr3 12504272 12504399 -205532759 + MER5A DNA MER1_type 1 126 -63 664 240 0 0 chr3 12504416 12504545 -205532613 - MER5B DNA MER1_type 0 178 50 183 80 0 0 chr3 12504886 12504911 -205532247 + (TCTCCC)n Simple_repeat Simple_repeat 3 27 0 251 89 67 0 chr3 12505703 12505748 -205531410 + CT-rich Low_complexity Low_complexity 3 50 0 1542 201 7 0 chr3 12505748 12506022 -205531136 - AluJo SINE Alu -36 276 1 211 327 78 65 chr3 12506106 12506259 -205530899 - L2 LINE L2 -292 2980 2826 392 157 135 22 chr3 12506305 12506394 -205530764 - MLT2D LTR ERVL -1 396 298 801 144 0 8 chr3 12506408 12506526 -205530632 - FLAM_C SINE Alu -13 130 14 1297 174 64 77 chr3 12506531 12506858 -205530300 - MLT2D LTR ERVL -91 323 1 1596 216 92 22 chr3 12506899 12507269 -205529889 + MSTD LTR MaLR 1 396 0 286 315 164 25 chr3 12507631 12508034 -205529124 - L2 LINE L2 -665 2649 2191 300 281 48 68 chr3 12508588 12508734 -205528424 + MIR SINE MIR 25 167 -95 216 325 68 34 chr3 12508757 12508874 -205528284 - L2 LINE L2 -5 3308 3188 772 240 168 41 chr3 12508973 12509265 -205527893 - MER102a DNA MER1_type 0 330 2 1219 217 53 53 chr3 12510395 12510754 -205526404 - MLT1A2 LTR MaLR -15 359 1 180 0 0 0 chr3 12511162 12511182 -205525976 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 903 110 0 0 chr3 12511187 12511305 -205525853 - AluSq/x SINE Alu -195 118 1 832 286 67 0 chr3 12561473 12561697 -205475461 + MIR SINE MIR 13 251 -11 246 274 24 12 chr3 12562475 12562559 -205474599 - MIR SINE MIR -12 250 166 1846 72 5 0 chr3 12562562 12562785 -205474373 - AluSp SINE Alu -3 310 87 206 295 16 0 chr3 12562785 12562846 -205474312 - MIR SINE MIR -114 94 33 1990 145 3 0 chr3 12562851 12563164 -205473994 - AluSx SINE Alu 0 314 1 189 224 259 35 chr3 12563429 12563545 -205473613 - MIR3 SINE MIR -62 146 5 196 330 73 43 chr3 12563967 12564200 -205472958 + L2 LINE L2 2546 2785 -529 246 279 34 32 chr3 12564349 12564496 -205472662 - MIR SINE MIR -44 218 2 330 300 169 25 chr3 12564611 12564771 -205472387 - MIR3 SINE MIR -6 202 20 238 349 46 0 chr3 12565346 12565455 -205471703 - MIR SINE MIR -117 145 32 234 333 30 0 chr3 12566070 12566169 -205470989 - MER103 DNA DNA -2 164 63 1062 169 62 5 chr3 12566365 12566560 -205470598 + MER1B DNA MER1_type 4 209 -88 332 228 69 50 chr3 12566660 12566761 -205470397 + L2 LINE L2 3173 3275 -38 557 298 26 37 chr3 12567230 12567421 -205469737 - MIR3 SINE MIR -3 205 17 23 0 0 0 chr3 12567466 12567489 -205469669 + AT_rich Low_complexity Low_complexity 1 23 0 3749 187 30 21 chr3 12567489 12568188 -205468970 - L1MB7 LINE L1 -77 6107 5399 2152 141 13 0 chr3 12568188 12568492 -205468666 - AluJb SINE Alu -4 308 1 3749 187 30 21 chr3 12568492 12568568 -205468590 - L1MB7 LINE L1 -785 5399 5325 846 135 8 23 chr3 12568568 12568701 -205468457 - FLAM_C SINE Alu -2 131 1 413 276 40 63 chr3 12569035 12569209 -205467949 - L2 LINE L2 0 3272 3103 233 274 281 38 chr3 12569234 12569497 -205467661 + L2 LINE L2 2425 2751 -563 189 324 88 0 chr3 12569511 12569613 -205467545 + L2 LINE L2 2964 3074 -198 1159 234 100 30 chr3 12569615 12570055 -205467103 + MLT1H1 LTR MaLR 18 488 -67 448 269 115 0 chr3 12570185 12570289 -205466869 + L2 LINE L2 3157 3272 0 189 240 160 0 chr3 12570297 12570372 -205466786 - L2 LINE L2 -167 3105 3019 183 402 12 0 chr3 12570508 12570590 -205466568 + L2 LINE L2 3189 3271 -1 217 291 103 51 chr3 12570609 12570726 -205466432 + MIR SINE MIR 19 141 -67 435 267 93 0 chr3 12571946 12572107 -205465051 + Charlie8 DNA MER1_type 53 228 -2189 851 269 68 56 chr3 12572238 12573049 -205464109 - L1MEd LINE L1 -858 1632 845 2604 44 0 0 chr3 12573066 12573359 -205463799 - AluY SINE Alu -18 293 1 2420 90 63 0 chr3 12574139 12574473 -205462685 + THE1A LTR MaLR 1 355 0 201 158 26 0 chr3 12574546 12574584 -205462574 + (CACCC)n Simple_repeat Simple_repeat 3 41 0 219 320 33 65 chr3 12575065 12575218 -205461940 + L2 LINE L2 2911 3058 -255 907 171 50 11 chr3 12575227 12575408 -205461750 + MER5A DNA MER1_type 1 188 -1 367 273 61 0 chr3 12575429 12575528 -205461630 + L2 LINE L2 3141 3245 -27 205 229 53 135 chr3 12575557 12575727 -205461431 - L2 LINE L2 -246 3026 2871 747 219 43 12 chr3 12575801 12575965 -205461193 + MER5B DNA MER1_type 4 172 -6 1916 166 7 0 chr3 12575976 12576271 -205460887 + AluJo SINE Alu 1 297 -15 206 308 70 92 chr3 12576287 12576690 -205460468 - L2 LINE L2 -557 2757 2364 1064 163 16 0 chr3 12577507 12577691 -205459467 - MER5A DNA MER1_type -2 187 1 284 263 124 25 chr3 12578117 12578280 -205458878 + MIR3 SINE MIR 21 171 -37 876 239 84 66 chr3 12578776 12579348 -205457810 - L1ME4a LINE L1 -18 6103 5522 310 219 0 0 chr3 12579362 12579426 -205457732 + L2 LINE L2 3200 3263 -9 206 283 0 0 chr3 12579432 12579478 -205457680 + MIR SINE MIR 106 151 -57 621 269 26 52 chr3 12579582 12579850 -205457308 + MIR SINE MIR 2 262 0 2074 211 47 10 chr3 12580478 12580965 -205456193 - MLT1D LTR MaLR 0 505 1 199 254 48 16 chr3 12580976 12581039 -205456119 - L2 LINE L2 0 3313 3249 1084 222 110 76 chr3 12581205 12581246 -205455912 - MER113 DNA MER1_type? 0 521 483 1961 121 74 9 chr3 12581246 12581585 -205455573 - MER46B DNA MER2_type 0 236 1 1084 222 110 76 chr3 12581585 12582042 -205455116 - MER113 DNA MER1_type? -38 483 6 490 274 8 0 chr3 12583038 12583162 -205453996 + MIR SINE MIR 73 197 -65 568 270 15 7 chr3 12583190 12583327 -205453831 - MIR SINE MIR -105 157 20 273 227 96 18 chr3 12583427 12583526 -205453632 + MIR SINE MIR 28 148 -60 36 116 0 0 chr3 12583998 12584162 -205452996 + AT_rich Low_complexity Low_complexity 1 164 0 22 89 0 0 chr3 12584196 12584241 -205452917 + AT_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr3 12584286 12584314 -205452844 + AT_rich Low_complexity Low_complexity 1 28 0 59 46 0 0 chr3 12584347 12584434 -205452724 + AT_rich Low_complexity Low_complexity 1 87 0 351 295 103 6 chr3 12584833 12584989 -205452169 + LTR16A LTR ERVL 167 337 -113 375 226 54 0 chr3 12585221 12585314 -205451844 + MIR SINE MIR 47 144 -64 529 258 65 97 chr3 12585415 12585694 -205451464 + L2 LINE L2 3002 3271 -1 217 222 0 0 chr3 12585785 12585821 -205451337 - MIR SINE MIR -71 191 156 1592 174 28 9 chr3 12587072 12587389 -205449769 - MER33 DNA MER1_type 0 324 2 2609 141 22 4 chr3 12587624 12588078 -205449080 + L1MB3 LINE L1 5707 6168 -15 513 295 78 26 chr3 12588139 12588332 -205448826 - MIR SINE MIR -37 225 23 1443 276 48 36 chr3 12588348 12588935 -205448223 + L2 LINE L2 2718 3311 -2 267 257 48 67 chr3 12588939 12588966 -205448192 - MIR SINE MIR -61 201 175 498 243 27 0 chr3 12588966 12589077 -205448081 + MER81 DNA DNA 1 114 0 267 257 48 67 chr3 12589077 12589154 -205448004 - MIR SINE MIR -87 175 99 243 365 139 0 chr3 12589246 12589404 -205447754 + MIR SINE MIR 8 180 -62 652 352 0 8 chr3 12589413 12589660 -205447498 - LTR16A LTR ERVL 0 450 206 838 323 114 28 chr3 12591369 12591806 -205445352 - L3 LINE CR1 -8 1569 1095 1978 120 3 7 chr3 12591850 12592149 -205445009 + AluSx SINE Alu 1 298 -14 837 127 0 0 chr3 12592551 12592669 -205444489 + AluJb SINE Alu 1 118 -194 1907 232 38 15 chr3 12592755 12593234 -205443924 + L1ME1 LINE L1 5596 6085 -81 368 283 0 33 chr3 12593257 12593349 -205443809 + MIR3 SINE MIR 103 191 -17 186 71 0 0 chr3 12593760 12593788 -205443370 + (TTAA)n Simple_repeat Simple_repeat 2 29 0 334 305 184 12 chr3 12594295 12594551 -205442607 + L2 LINE L2 2887 3186 -86 711 282 44 5 chr3 12594562 12594765 -205442393 - MIR SINE MIR -1 261 51 534 287 126 12 chr3 12594765 12594932 -205442226 + MER91A DNA MER1_type 1 186 -10 244 182 45 0 chr3 12594921 12594965 -205442193 - MIR SINE MIR -212 50 5 * 431 260 41 41 chr3 12595700 12595846 -205441312 + MIR SINE MIR 67 212 -50 290 385 65 6 chr3 12596775 12597126 -205440032 - L2 LINE L2 -2361 953 582 514 220 147 39 chr3 12597145 12597477 -205439681 - MLT1J LTR MaLR -35 476 11 462 257 142 0 chr3 12597506 12597619 -205439539 - L2 LINE L2 -2 3270 3142 249 313 131 28 chr3 12597768 12597944 -205439214 - L2 LINE L2 0 3313 3120 222 194 32 16 chr3 12598815 12598877 -205438281 + T-rich Low_complexity Low_complexity 2 64 0 245 176 0 0 chr3 12598879 12598930 -205438228 - L1MB3 LINE L1 -1 6182 6132 238 335 68 0 chr3 12598942 12599133 -205438025 - MER113 DNA MER1_type? -313 208 5 470 293 29 7 chr3 12599133 12599273 -205437885 - MIR3 SINE MIR -51 157 15 245 333 37 9 chr3 12599707 12599815 -205437343 + MIR SINE MIR 43 153 -109 207 263 200 27 chr3 12599894 12600042 -205437116 - MIR SINE MIR -62 200 22 289 150 50 0 chr3 12600203 12600263 -205436895 + MER103 DNA DNA 93 155 -11 519 245 148 0 chr3 12600806 12600961 -205436197 + MER45A DNA AcHobo 1 178 0 329 192 167 39 chr3 12600966 12601044 -205436114 + L2 LINE L2 3147 3234 -38 2476 147 70 2 chr3 12602160 12602603 -205434555 - L1MB3 LINE L1 -7 6176 5704 279 258 27 30 chr3 12602932 12603087 -205434071 + MIR SINE MIR 34 235 -27 959 189 115 86 chr3 12603165 12603609 -205433549 - L1MC4 LINE L1 -601 7441 6985 180 224 0 149 chr3 12603682 12603749 -205433409 - MIR SINE MIR -16 246 190 2593 184 80 19 chr3 12603762 12604288 -205432870 - MLT1F1 LTR MaLR -9 558 1 607 201 255 0 chr3 12604303 12604452 -205432706 - MIR SINE MIR -64 198 12 477 100 0 0 chr3 12604805 12604875 -205432283 - L1PA15 LINE L1 -9 6156 6087 928 264 97 36 chr3 12605615 12605945 -205431213 + MLT1K LTR MaLR 84 433 -155 477 0 0 0 chr3 12605952 12606005 -205431153 + (TGGA)n Simple_repeat Simple_repeat 1 53 0 219 289 115 39 chr3 12606125 12606229 -205430929 - L2 LINE L2 -5 3308 3197 272 284 197 0 chr3 12606241 12606368 -205430790 + MLT1K LTR MaLR 419 570 -18 1692 165 0 4 chr3 12607466 12607745 -205429413 - AluJb SINE Alu -22 290 13 667 301 9 19 chr3 12607829 12608040 -205429118 + MIR SINE MIR 47 254 -8 321 307 69 55 chr3 12608056 12608274 -205428884 + L1MC4a LINE L1 5841 6061 -1747 23 33 0 0 chr3 12608354 12608384 -205428774 + AT_rich Low_complexity Low_complexity 1 30 0 284 260 13 13 chr3 12608918 12608995 -205428163 - MIR SINE MIR -115 93 17 278 401 7 0 chr3 12609582 12609719 -205427439 + (TG)n Simple_repeat Simple_repeat 1 138 0 189 107 0 0 chr3 12609814 12609842 -205427316 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 309 259 158 51 chr3 12610270 12610428 -205426730 + MLT1H LTR MaLR 56 230 -319 628 203 17 0 chr3 12610480 12610598 -205426560 + MLT1K LTR MaLR 436 555 0 237 256 77 39 chr3 12610600 12610678 -205426480 + MIR3 SINE MIR 88 168 -40 180 286 24 71 chr3 12610706 12610790 -205426368 - MIR SINE MIR -82 180 101 1820 157 0 25 chr3 12611048 12611366 -205425792 + AluJo SINE Alu 1 310 -2 193 310 103 0 chr3 12611638 12611696 -205425462 - L3 LINE CR1 -934 643 580 1899 133 0 16 chr3 12612171 12612479 -205424679 - AluSx SINE Alu -9 303 1 911 169 28 17 chr3 12612514 12612692 -205424466 - AluJo SINE Alu -12 300 121 2249 215 19 24 chr3 12612699 12613191 -205423967 - L1MB7 LINE L1 -14 6170 5679 535 313 57 32 chr3 12613191 12613608 -205423550 - L1MC4a LINE L1 -297 5824 5394 351 283 115 37 chr3 12614097 12614288 -205422870 - MIR SINE MIR -34 228 23 529 233 200 33 chr3 12615140 12615350 -205421808 + LTR16A LTR ERVL 16 260 -190 1548 153 51 0 chr3 12615816 12616091 -205421067 - AluJo SINE Alu -23 289 1 474 228 102 0 chr3 12616164 12616291 -205420867 + MIR SINE MIR 102 241 -21 352 68 0 0 chr3 12617135 12617179 -205419979 + MIR3 SINE MIR 115 158 -50 1110 178 5 0 chr3 12617180 12617365 -205419793 + MER5A DNA MER1_type 2 187 -2 588 274 58 58 chr3 12617396 12617725 -205419433 - MER102b DNA MER1_type -12 329 1 891 352 115 15 chr3 12618102 12618753 -205418405 + L3 LINE CR1 786 1501 -76 1047 269 97 71 chr3 12618790 12619326 -205417832 + MLT1K LTR MaLR 37 586 -2 354 319 101 29 chr3 12619703 12619910 -205417248 - MIR SINE MIR -6 256 35 246 360 0 0 chr3 12620290 12620365 -205416793 + MER5A DNA MER1_type 112 186 -3 478 224 48 40 chr3 12621306 12621431 -205415727 - MIR SINE MIR -7 255 130 2524 175 60 28 chr3 12621545 12622081 -205415077 - L1MC2 LINE L1 -151 6193 5641 258 113 57 0 chr3 12622082 12622135 -205415023 - L1MC2 LINE L1 0 6344 6289 281 128 64 28 chr3 12622309 12622418 -205414740 + (TA)n Simple_repeat Simple_repeat 1 113 0 810 219 56 85 chr3 12622432 12622518 -205414640 - L1MC2 LINE L1 -1865 5943 5856 1912 138 0 7 chr3 12622518 12622809 -205414349 + AluSx SINE Alu 1 289 -23 810 219 56 85 chr3 12622809 12623041 -205414117 - L1MC2 LINE L1 -1952 5856 5634 511 203 23 73 chr3 12623155 12623332 -205413826 + L1MC5 LINE L1 7758 7925 -36 498 297 36 0 chr3 12623791 12623929 -205413229 - MIR SINE MIR -72 190 48 587 223 192 16 chr3 12624163 12624356 -205412802 + MIR SINE MIR 6 232 -30 699 133 285 0 chr3 12624368 12624526 -205412632 - MER3 DNA MER1_type -6 203 1 408 303 48 37 chr3 12624842 12625030 -205412128 + MIR SINE MIR 21 210 -52 351 275 176 14 chr3 12625105 12625247 -205411911 + MIR SINE MIR 20 184 -78 367 283 87 29 chr3 12626720 12626858 -205410300 + MIR SINE MIR 83 228 -34 253 200 20 0 chr3 12627294 12627344 -205409814 - L2 LINE L2 -244 3028 2978 204 255 123 47 chr3 12628242 12628348 -205408810 + L2 LINE L2 3159 3272 0 1988 125 0 0 chr3 12628491 12628800 -205408358 + AluSx SINE Alu 1 309 0 379 180 140 20 chr3 12628941 12629041 -205408117 - MIR SINE MIR -10 252 141 624 277 36 111 chr3 12629063 12629084 -205408074 - L2 LINE L2 -267 3005 2984 2730 82 6 3 chr3 12629084 12629438 -205407720 - THE1A LTR MaLR 0 355 1 624 277 36 111 chr3 12629438 12630122 -205407036 - L2 LINE L2 -288 2984 2367 191 339 89 9 chr3 12630966 12631078 -205406080 - MIR SINE MIR -113 149 29 402 324 0 10 chr3 12631310 12631412 -205405746 + MIR SINE MIR 32 132 -76 264 280 187 13 chr3 12631417 12631567 -205405591 - MER20B DNA MER1_type -43 176 1 1178 185 94 42 chr3 12631571 12631648 -205405510 - MER33 DNA MER1_type -2261 324 252 1988 141 0 6 chr3 12631648 12631960 -205405198 + AluSx SINE Alu 1 310 -2 1178 185 94 42 chr3 12631960 12632190 -205404968 - MER33 DNA MER1_type -2333 252 1 418 308 55 52 chr3 12632640 12632968 -205404190 + L2 LINE L2 2814 3142 -171 917 139 13 6 chr3 12632989 12633147 -205404011 - AluSg/x SINE Alu -22 290 132 274 263 97 79 chr3 12633150 12633264 -205403894 + L2 LINE L2 3155 3270 -43 21 0 0 0 chr3 12633516 12633537 -205403621 + AT_rich Low_complexity Low_complexity 1 21 0 678 152 0 0 chr3 12634040 12634139 -205403019 - Tigger7 DNA MER2_type 0 2487 2389 * 1292 184 0 107 chr3 12634137 12634436 -205402722 - Tigger7 DNA MER2_type -2220 267 1 892 172 40 0 chr3 12634843 12635017 -205402141 + L1MC3 LINE L1 7605 7785 0 222 91 0 0 chr3 12635320 12635353 -205401805 + (ATG)n Simple_repeat Simple_repeat 1 33 0 500 276 135 5 chr3 12635567 12635759 -205401399 + MIR SINE MIR 33 249 -13 1587 191 0 0 chr3 12635775 12636057 -205401101 + AluJo SINE Alu 1 282 -30 513 84 0 0 chr3 12636059 12636130 -205401028 + (TA)n Simple_repeat Simple_repeat 1 71 0 42 48 0 0 chr3 12636134 12636197 -205400961 + AT_rich Low_complexity Low_complexity 1 63 0 260 212 41 53 chr3 12636352 12636455 -205400703 - L1M4 LINE L1 -1938 4208 4101 264 257 79 0 chr3 12636493 12636594 -205400564 + L1M4 LINE L1 3941 4049 -2097 364 226 55 65 chr3 12636741 12636940 -205400218 - L1M4 LINE L1 -3162 2984 2788 1844 138 7 16 chr3 12636974 12637279 -205399879 - AluJo SINE Alu -5 307 6 385 279 56 101 chr3 12637307 12637949 -205399209 + L1ME3A LINE L1 4708 5320 -826 1146 166 50 22 chr3 12638021 12638299 -205398859 + AluJo SINE Alu 14 299 -13 847 318 61 25 chr3 12638310 12638819 -205398339 + L1ME3A LINE L1 5368 5894 -276 440 115 0 13 chr3 12639447 12639525 -205397633 + (TGGA)n Simple_repeat Simple_repeat 3 79 0 29 28 0 0 chr3 12639696 12639732 -205397426 + AT_rich Low_complexity Low_complexity 1 36 0 21 98 0 0 chr3 12639759 12639810 -205397348 + AT_rich Low_complexity Low_complexity 1 51 0 312 323 54 23 chr3 12640270 12640400 -205396758 - MIR SINE MIR -32 230 97 328 225 67 34 chr3 12640446 12640535 -205396623 - L1MC4 LINE L1 -1339 6703 6612 301 260 10 67 chr3 12640451 12640555 -205396603 + L1MC4 LINE L1 6611 6708 -1334 * 303 286 22 22 chr3 12640695 12640786 -205396372 + L1MC4 LINE L1 6612 6702 -1340 231 185 111 0 chr3 12640799 12640880 -205396278 + L1MC4 LINE L1 6614 6703 -1339 310 264 7 7 chr3 12640883 12641023 -205396135 + (TA)n Simple_repeat Simple_repeat 2 141 0 1718 156 30 3 chr3 12641025 12641320 -205395838 - AluJb SINE Alu -9 303 1 185 259 69 35 chr3 12641328 12641386 -205395772 - L2 LINE L2 -17 3296 3237 851 282 58 47 chr3 12641398 12641577 -205395581 - LTR16A LTR ERVL 0 450 274 4552 95 5 5 chr3 12641577 12642220 -205394938 - L1PA12 LINE L1 -1 6167 5525 851 282 58 47 chr3 12642220 12642405 -205394753 - LTR16A LTR ERVL -176 274 82 273 200 0 80 chr3 12642422 12642497 -205394661 - L2 LINE L2 -86 3227 3159 395 129 0 16 chr3 12642922 12642984 -205394174 - MLT1L LTR MaLR -8 607 547 680 291 66 21 chr3 12643852 12644141 -205393017 + L1MC4a LINE L1 5666 5967 -1841 1421 174 13 0 chr3 12644983 12645212 -205391946 - MLT1A1 LTR MaLR 0 365 134 1157 96 39 0 chr3 12645212 12645368 -205391790 - MSTB LTR MaLR 0 426 265 410 160 20 60 chr3 12646047 12646147 -205391011 - L1ME2 LINE L1 -60 6104 6009 581 228 42 1 chr3 12646152 12646300 -205390858 + L1ME2 LINE L1 5933 6248 -86 378 355 39 20 chr3 12646300 12646503 -205390655 - L2 LINE L2 -376 2938 2732 2530 48 0 6 chr3 12646742 12647053 -205390105 - AluY SINE Alu -2 309 1 352 272 65 19 chr3 12647918 12648073 -205389085 - MIR SINE MIR -62 146 21 184 271 34 17 chr3 12648286 12648345 -205388813 + L2 LINE L2 3246 3305 -8 * 710 267 94 36 chr3 12648344 12648463 -205388695 - L2 LINE L2 -94 3219 3108 1441 198 7 16 chr3 12648463 12648766 -205388392 + AluJo SINE Alu 1 300 -12 710 267 94 36 chr3 12648766 12648923 -205388235 - L2 LINE L2 -205 3108 2927 229 290 43 32 chr3 12649430 12649523 -205387635 + MIR3 SINE MIR 77 170 -38 202 118 20 98 chr3 12649597 12649648 -205387510 - MIR3 SINE MIR -49 159 113 255 265 48 48 chr3 12649686 12649702 -205387456 - MER5B DNA MER1_type -95 83 68 1297 136 3 183 chr3 12649702 12650063 -205387095 - AluJb SINE Alu -16 296 1 255 265 48 48 chr3 12650063 12650129 -205387029 - MER5B DNA MER1_type -109 69 1 508 339 213 26 chr3 12650731 12650941 -205386217 + L3 LINE CR1 321 490 -1087 1573 167 72 10 chr3 12650941 12651234 -205385924 - AluJb SINE Alu -1 311 1 508 339 213 26 chr3 12651234 12651628 -205385530 + L3 LINE CR1 490 1038 -539 2343 76 3 0 chr3 12651632 12651935 -205385223 - AluY SINE Alu -7 304 1 389 218 150 8 chr3 12652056 12652189 -205384969 - L1ME4a LINE L1 -2 6119 5968 240 227 121 0 chr3 12652239 12652305 -205384853 - MIR SINE MIR -98 164 91 726 308 205 25 chr3 12652692 12652757 -205384401 + L2 LINE L2 2229 2281 -1032 1845 216 29 5 chr3 12652757 12653174 -205383984 - L1MB7 LINE L1 -1 6183 5757 726 308 205 25 chr3 12653174 12653817 -205383341 + L2 LINE L2 2281 3052 -261 301 74 19 19 chr3 12653827 12653881 -205383277 + (TTTTA)n Simple_repeat Simple_repeat 1 54 0 1760 125 0 46 chr3 12653883 12654164 -205382994 - AluJb SINE Alu -44 268 1 604 156 41 16 chr3 12654165 12654287 -205382871 - MLT1B LTR MaLR -264 126 2 201 352 80 23 chr3 12655195 12655371 -205381787 - L2 LINE L2 -79 3193 3008 1987 165 120 2 chr3 12655744 12656137 -205381021 + L1MB3 LINE L1 5745 6183 0 234 215 13 51 chr3 12656175 12656254 -205380904 + GA-rich Low_complexity Low_complexity 4 79 0 344 339 54 24 chr3 12657035 12657203 -205379955 + L2 LINE L2 3097 3269 -3 381 347 41 41 chr3 12657608 12657689 -205379469 + MIR SINE MIR 13 93 -169 2085 122 0 0 chr3 12657689 12657984 -205379174 - AluSg SINE Alu -15 295 1 381 347 41 41 chr3 12657984 12658147 -205379011 + MIR SINE MIR 92 257 -5 280 288 14 0 chr3 12658179 12658252 -205378906 + MER103 DNA DNA 90 163 -3 2201 157 56 12 chr3 12658284 12658692 -205378466 - MSTB LTR MaLR 0 426 1 464 313 62 0 chr3 12658903 12659031 -205378127 - L2 LINE L2 -3 3269 3134 248 242 61 30 chr3 12659106 12659205 -205377953 - L2 LINE L2 -331 2982 2881 1101 281 56 35 chr3 12659536 12659752 -205377406 + MLT1K LTR MaLR 4 214 -262 1917 144 3 0 chr3 12659752 12660057 -205377101 + AluJb SINE Alu 1 306 -6 1101 281 56 35 chr3 12660057 12660303 -205376855 + MLT1K LTR MaLR 214 476 0 203 308 125 10 chr3 12660330 12660434 -205376724 - MIR SINE MIR -69 139 24 403 252 94 38 chr3 12660901 12661060 -205376098 - MIR SINE MIR 0 262 95 895 277 126 28 chr3 12661600 12662069 -205375089 + MER113 DNA MER1_type? 7 521 0 748 255 101 49 chr3 12662511 12662817 -205374341 + Charlie2 DNA MER1_type 2 323 -2539 1824 114 52 0 chr3 12662817 12663128 -205374030 + AluSg SINE Alu 1 325 0 1292 202 0 8 chr3 12663146 12663393 -205373765 + L1PB4 LINE L1 5908 6152 -4 205 0 0 0 chr3 12663489 12663512 -205373646 + MER5C DNA MER1_type 4 26 -298 1503 155 0 49 chr3 12663516 12663800 -205373358 + AluJo SINE Alu 18 287 -25 385 155 28 28 chr3 12663802 12663873 -205373285 + MER5A DNA MER1_type 10 80 -109 1871 131 0 10 chr3 12663902 12664207 -205372951 - AluSc SINE Alu -7 302 1 1121 158 0 6 chr3 12664227 12664404 -205372754 + AluSg/x SINE Alu 132 307 -5 27 0 0 0 chr3 12664434 12664461 -205372697 + AT_rich Low_complexity Low_complexity 1 27 0 1017 215 116 59 chr3 12664470 12664824 -205372334 + MLT1C LTR MaLR 94 467 0 1904 131 0 25 chr3 12664840 12665160 -205371998 - AluJo SINE Alu 0 312 1 329 205 205 12 chr3 12665168 12665251 -205371907 - MLT1D LTR MaLR -399 106 8 303 244 23 122 chr3 12665502 12665674 -205371484 + MIR SINE MIR 107 261 -1 257 234 129 53 chr3 12665701 12665872 -205371286 + L1ME4a LINE L1 5932 6115 -6 252 0 0 0 chr3 12665970 12665998 -205371160 + (CA)n Simple_repeat Simple_repeat 2 29 0 437 253 99 31 chr3 12666496 12666658 -205370500 + MIR SINE MIR 1 173 -89 400 69 48 18 chr3 12667209 12667277 -205369881 + AluSg/x SINE Alu 74 135 -165 652 263 72 16 chr3 12667709 12667903 -205369255 + MIR SINE MIR 57 261 -1 238 298 123 18 chr3 12667957 12668071 -205369087 + MIR3 SINE MIR 35 160 -48 418 250 26 9 chr3 12668116 12668232 -205368926 - MER117 DNA MER1_type -79 118 1 265 186 0 0 chr3 12668271 12668314 -205368844 + MSTA LTR MaLR 1 43 -385 291 207 0 0 chr3 12669677 12669735 -205367423 - L1ME3A LINE L1 -11 6159 6102 1938 98 0 4 chr3 12670582 12670856 -205366302 + L1PA7 LINE L1 5877 6149 -5 269 372 41 14 chr3 12671191 12671336 -205365822 + MIR SINE MIR 99 247 -15 191 374 148 30 chr3 12671358 12671724 -205365434 - L2 LINE L2 -11 3261 2853 1737 144 22 39 chr3 12671990 12672302 -205364856 + AluJo SINE Alu 4 310 -2 282 229 29 0 chr3 12672446 12672516 -205364642 - MIR SINE MIR -83 125 54 251 191 138 64 chr3 12672935 12673029 -205364129 - MIR SINE MIR -58 204 104 450 0 0 0 chr3 12673532 12673582 -205363576 + (CA)n Simple_repeat Simple_repeat 2 51 0 911 239 41 18 chr3 12674381 12674599 -205362559 + MER58A DNA MER1_type 2 224 0 765 300 84 9 chr3 12674641 12674974 -205362184 - L1ME4a LINE L1 -83 6038 5681 297 75 0 0 chr3 12674975 12675015 -205362143 + (TG)n Simple_repeat Simple_repeat 1 40 0 1134 116 24 0 chr3 12675295 12675459 -205361699 - L1PA10 LINE L1 -25 6143 5976 1014 258 21 0 chr3 12676636 12676869 -205360289 - MIR SINE MIR -1 261 24 2120 104 3 0 chr3 12677424 12677722 -205359436 + AluSg SINE Alu 1 299 -11 348 319 124 9 chr3 12677732 12677845 -205359313 + L2 LINE L2 3144 3269 -3 516 337 37 0 chr3 12677926 12678113 -205359045 - MER91A DNA MER1_type -1 195 2 702 278 68 63 chr3 12678524 12678905 -205358253 + L2 LINE L2 2594 2976 -338 327 49 0 0 chr3 12679107 12679148 -205358010 + (CA)n Simple_repeat Simple_repeat 2 42 0 469 281 58 18 chr3 12679272 12679443 -205357715 - MIR SINE MIR -57 205 28 319 315 127 24 chr3 12680284 12680449 -205356709 - MIR3 SINE MIR -9 199 18 2836 183 16 12 chr3 12680476 12680979 -205356179 + MLT2B3 LTR ERVL 3 507 -47 230 283 0 0 chr3 12680989 12681042 -205356116 + (CA)n Simple_repeat Simple_repeat 2 54 0 247 143 71 54 chr3 12681042 12681098 -205356060 + MLT2B3 LTR ERVL 464 520 0 510 266 47 30 chr3 12681238 12681407 -205355751 + MER20B DNA MER1_type 8 179 -604 252 300 38 0 chr3 12681639 12681719 -205355439 - MIR SINE MIR -118 144 62 2087 212 22 7 chr3 12681722 12682184 -205354974 + L1MB3 LINE L1 5715 6183 0 180 0 0 0 chr3 12682600 12682620 -205354538 + (CACAC)n Simple_repeat Simple_repeat 1 20 0 382 280 93 47 chr3 12682980 12683130 -205354028 + L3 LINE CR1 967 1123 -454 249 233 23 70 chr3 12683204 12683290 -205353868 - 7SK RNA RNA -105 88 7 420 207 27 0 chr3 12683456 12683567 -205353591 - MER117 DNA MER1_type -83 114 1 186 193 0 0 chr3 12683591 12683648 -205353510 + T-rich Low_complexity Low_complexity 3 59 0 2102 119 0 16 chr3 12683652 12683964 -205353194 - AluSx SINE Alu -5 307 1 269 50 0 25 chr3 12683965 12684005 -205353153 + (TTTTA)n Simple_repeat Simple_repeat 3 41 0 816 121 9 0 chr3 12684008 12684124 -205353034 - FLAM_C SINE Alu -25 118 2 1724 143 21 7 chr3 12684342 12684622 -205352536 + AluSx SINE Alu 1 284 -28 211 296 28 46 chr3 12885217 12885325 -205151833 + L2 LINE L2 332 437 -2877 2209 116 17 0 chr3 12885426 12885728 -205151430 - AluSx SINE Alu -5 307 1 259 267 57 48 chr3 12886210 12886239 -205150919 + L2 LINE L2 1326 1353 -1961 2102 115 13 29 chr3 12886239 12886552 -205150606 - AluSx SINE Alu -4 308 1 259 267 57 48 chr3 12886552 12886627 -205150531 + L2 LINE L2 1353 1431 -1883 585 314 173 26 chr3 12886997 12887707 -205149451 + L2 LINE L2 1805 2409 -905 2340 147 18 61 chr3 12887707 12888092 -205149066 + MSTB LTR MaLR 1 401 -25 1760 162 17 26 chr3 12888092 12888229 -205148929 + AluJo SINE Alu 1 138 -174 2310 100 0 0 chr3 12888229 12888519 -205148639 + AluSc SINE Alu 1 290 -19 1760 162 17 26 chr3 12888519 12888683 -205148475 + AluJo SINE Alu 138 299 -13 2244 122 0 0 chr3 12888690 12888993 -205148165 + AluSx SINE Alu 1 303 -9 2340 147 18 61 chr3 12888993 12889042 -205148116 + MSTB LTR MaLR 407 424 -2 585 314 173 26 chr3 12889042 12889337 -205147821 + L2 LINE L2 2409 2958 -356 552 194 81 122 chr3 12889861 12889920 -205147238 + MLT1J LTR MaLR 5 65 -446 2314 104 0 0 chr3 12889920 12890217 -205146941 - AluSx SINE Alu -15 297 1 552 194 81 122 chr3 12890217 12890600 -205146558 + MLT1J LTR MaLR 65 500 -11 263 344 0 25 chr3 12892128 12892288 -205144870 + C-rich Low_complexity Low_complexity 4 159 0 350 113 0 42 chr3 12893246 12893317 -205143841 + (CA)n Simple_repeat Simple_repeat 2 69 0 237 65 0 0 chr3 12894621 12894652 -205142506 + (GA)n Simple_repeat Simple_repeat 2 32 0 1974 134 22 0 chr3 12894729 12895006 -205142152 + AluSx SINE Alu 3 285 -27 3730 178 20 18 chr3 12895026 12895690 -205141468 - MER72 LTR ERV1 -57 665 1 1185 169 59 72 chr3 12895731 12895796 -205141362 + L1MB7 LINE L1 5263 5327 -847 1796 183 3 7 chr3 12895796 12896096 -205141062 + AluJb SINE Alu 1 299 -13 1185 169 59 72 chr3 12896096 12896331 -205140827 + L1MB7 LINE L1 5327 5566 -608 1997 161 14 30 chr3 12896331 12896692 -205140466 + THE1A LTR MaLR 1 355 0 1185 169 59 72 chr3 12896692 12896763 -205140395 + L1MB7 LINE L1 5566 5636 -538 340 182 0 0 chr3 12896764 12896819 -205140339 + Tigger5 DNA MER2_type 1 55 -2268 484 198 0 0 chr3 12896832 12896913 -205140245 + Tigger5 DNA MER2_type 2243 2323 0 917 148 10 91 chr3 12896916 12896973 -205140185 + L1MB7 LINE L1 5639 5699 -485 1707 188 3 0 chr3 12896973 12897265 -205139893 + AluJo SINE Alu 3 295 -17 917 148 10 91 chr3 12897265 12897416 -205139742 + L1MB7 LINE L1 5699 5830 -354 1492 159 172 99 chr3 12897416 12897781 -205139377 + MER21A LTR ERV1 9 401 -530 291 264 0 0 chr3 12897781 12897853 -205139305 + MER34 LTR ERV1 2 73 -469 2500 145 61 18 chr3 12897876 12898332 -205138826 + LTR29 LTR ERV1 137 612 -10 2551 146 27 50 chr3 12898339 12898783 -205138375 + MER21A LTR ERV1 495 928 -3 1263 200 20 84 chr3 12898783 12899099 -205138059 + L1MB7 LINE L1 5827 6119 -65 1743 114 0 0 chr3 12899099 12899327 -205137831 + AluSg/x SINE Alu 75 302 -10 1263 200 20 84 chr3 12899327 12899365 -205137793 + L1MB7 LINE L1 6119 6158 -26 478 181 11 0 chr3 12899468 12899562 -205137596 + MER113 DNA MER1_type? 188 282 -239 509 209 0 0 chr3 12899659 12899745 -205137413 + FLAM_A SINE Alu 1 86 -56 563 110 37 209 chr3 12899748 12899911 -205137247 + L1MB5 LINE L1 5832 5966 -208 1149 151 97 0 chr3 12899951 12900136 -205137022 - AluSg/x SINE Alu -26 286 84 491 185 0 0 chr3 12900413 12900494 -205136664 + FLAM_C SINE Alu 30 110 -33 222 274 47 105 chr3 12900574 12900764 -205136394 + MIR SINE MIR 76 254 -8 1264 170 185 8 chr3 12901686 12901945 -205135213 - AluSg1 SINE Alu -4 305 1 198 0 0 0 chr3 12902201 12902223 -205134935 + (TTA)n Simple_repeat Simple_repeat 2 23 0 2296 114 0 0 chr3 12902225 12902531 -205134627 - AluSx SINE Alu -6 306 1 728 142 40 114 chr3 12903389 12903471 -205133687 - MER46A DNA MER2_type -2522 209 145 2336 96 3 0 chr3 12903471 12903774 -205133384 - AluSg SINE Alu -6 304 1 728 142 40 114 chr3 12903774 12903867 -205133291 - MER46A DNA MER2_type -2586 145 47 374 220 50 40 chr3 12904184 12904284 -205132874 + L2 LINE L2 3168 3268 -4 358 303 86 13 chr3 12904292 12904444 -205132714 - MIR SINE MIR -50 212 50 2562 48 0 0 chr3 12905666 12905957 -205131201 + AluY SINE Alu 1 291 -20 860 129 0 0 chr3 12906102 12906218 -205130940 - FLAM_C SINE Alu -17 116 1 2335 107 0 0 chr3 12906245 12906543 -205130615 - AluSg SINE Alu -12 298 1 232 250 0 0 chr3 12906767 12906823 -205130335 - L1MC/D LINE L1 -1876 5932 5877 1371 168 71 27 chr3 12906831 12906912 -205130246 - Tigger4(Zombi) DNA MER2_type 0 2731 2655 2369 110 0 0 chr3 12906912 12907222 -205129936 + AluSg SINE Alu 1 310 0 1371 168 71 27 chr3 12907222 12907477 -205129681 - Tigger4(Zombi) DNA MER2_type -76 2655 2 347 248 120 0 chr3 12907515 12907648 -205129510 - L1MC/D LINE L1 -2000 5808 5660 235 231 31 31 chr3 12907884 12907949 -205129209 - HAL1b LINE L1 -444 904 840 354 241 27 9 chr3 12908076 12908188 -205128970 - HAL1b LINE L1 -552 796 683 320 277 54 0 chr3 12908218 12908330 -205128828 - HAL1b LINE L1 -787 561 444 1893 181 0 3 chr3 12908337 12908630 -205128528 - AluJb SINE Alu -20 292 1 1400 137 4 26 chr3 12908630 12908863 -205128295 - MER2 DNA MER2_type -107 238 11 531 273 148 14 chr3 12909528 12909737 -205127421 + MIR SINE MIR 14 250 -12 1861 132 15 4 chr3 12909762 12910034 -205127124 - AluSg SINE Alu -13 297 23 2205 110 0 13 chr3 12910178 12910478 -205126680 + AluSx SINE Alu 1 296 -16 827 137 0 8 chr3 12910860 12910984 -205126174 + AluJo SINE Alu 12 134 -178 185 268 36 0 chr3 12911035 12911091 -205126067 + MIR SINE MIR 7 64 -198 1765 170 3 10 chr3 12911095 12911384 -205125774 + AluJo SINE Alu 1 287 -25 400 257 96 0 chr3 12911403 12911539 -205125619 + MIR SINE MIR 110 258 -4 939 181 0 0 chr3 12911612 12911761 -205125397 - AluJb SINE Alu -26 286 138 993 217 58 4 chr3 12911804 12912062 -205125096 - L1ME3 LINE L1 -1 6161 5890 1065 79 0 0 chr3 12912207 12912334 -205124824 + 7SLRNA srpRNA srpRNA 75 201 -119 2212 104 13 7 chr3 12912741 12913039 -205124119 - AluSx SINE Alu -10 302 3 183 239 0 70 chr3 12913425 12913496 -205123662 + MIR SINE MIR 163 228 -34 1861 175 68 0 chr3 12913514 12913840 -205123318 - MER7A DNA MER2_type 0 346 1 211 222 143 0 chr3 12913936 12913999 -205123159 - L2 LINE L2 -1 3312 3241 575 286 38 5 chr3 12914685 12914870 -205122288 + MIR SINE MIR 54 244 -18 180 0 0 0 chr3 12915088 12915108 -205122050 + (TG)n Simple_repeat Simple_repeat 2 21 0 1867 135 18 7 chr3 12915255 12915559 -205121599 - AluSx SINE Alu 0 307 1 22 0 0 0 chr3 12917018 12917040 -205120118 + AT_rich Low_complexity Low_complexity 1 22 0 1780 157 11 0 chr3 12917588 12917874 -205119284 - AluJb SINE Alu -23 289 1 230 326 73 59 chr3 12917977 12918265 -205118893 - L2 LINE L2 -38 3234 2943 28 61 0 0 chr3 12918636 12918685 -205118473 + AT_rich Low_complexity Low_complexity 1 49 0 1655 183 7 10 chr3 12918817 12919112 -205118046 - AluJo SINE Alu -16 296 3 486 240 185 7 chr3 12919243 12919389 -205117769 - MER5A DNA MER1_type 0 189 18 21 0 0 0 chr3 12919535 12919556 -205117602 + AT_rich Low_complexity Low_complexity 1 21 0 2622 57 0 13 chr3 12919642 12919957 -205117201 - AluY SINE Alu 0 311 1 1537 189 23 27 chr3 12920600 12920901 -205116257 - AluJo SINE Alu -12 300 1 2155 117 7 10 chr3 12921499 12921799 -205115359 - AluSx SINE Alu -13 299 1 2091 113 21 0 chr3 12922738 12923020 -205114138 + AluSq SINE Alu 1 288 -25 392 184 61 41 chr3 12925597 12925695 -205111463 - Charlie1 DNA MER1_type -255 2506 2407 834 172 77 107 chr3 12925703 12925808 -205111350 - Charlie1 DNA MER1_type -613 2148 2041 1658 126 22 0 chr3 12925808 12926039 -205111119 + AluSx SINE Alu 1 236 -76 834 172 77 107 chr3 12926039 12926194 -205110964 - Charlie1 DNA MER1_type -720 2041 1896 1289 241 100 47 chr3 12926196 12926668 -205110490 - Charlie1 DNA MER1_type -977 1784 1228 1043 198 171 0 chr3 12926668 12926926 -205110232 - MER2 DNA MER2_type 0 345 44 2212 187 202 59 chr3 12926981 12927389 -205109769 - Charlie1 DNA MER1_type -1524 1237 889 1216 208 36 46 chr3 12927389 12927692 -205109466 + AluJo SINE Alu 1 300 -12 2212 187 202 59 chr3 12927692 12928316 -205108842 - Charlie1 DNA MER1_type -1872 889 57 227 226 32 16 chr3 12928659 12928721 -205108437 + MIR SINE MIR 83 145 -117 3477 118 135 38 chr3 12928750 12929131 -205108027 - Tigger1 DNA MER2_type 0 2418 2075 1964 133 43 7 chr3 12929131 12929432 -205107726 - AluSx SINE Alu 0 312 1 3477 118 135 38 chr3 12929432 12929708 -205107450 - Tigger1 DNA MER2_type -343 2075 1697 191 167 0 48 chr3 12930963 12931005 -205106153 - MIR SINE MIR -6 256 217 1624 160 34 27 chr3 12931476 12931770 -205105388 + AluJb SINE Alu 1 296 -16 307 164 0 15 chr3 12932335 12932402 -205104756 - Charlie5 DNA MER1_type -2505 107 42 1048 90 131 95 chr3 12932934 12933156 -205104002 + MER30 DNA MER1_type 1 230 0 22 56 0 0 chr3 12938288 12938324 -205098834 + AT_rich Low_complexity Low_complexity 1 36 0 29 0 0 0 chr3 12939426 12939455 -205097703 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 12940958 12940979 -205096179 + AT_rich Low_complexity Low_complexity 1 21 0 1354 66 6 6 chr3 12944149 12944330 -205092828 + AluYa5 SINE Alu 118 298 -13 2176 129 0 0 chr3 12944751 12945054 -205092104 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr3 12945398 12945419 -205091739 + AT_rich Low_complexity Low_complexity 1 21 0 2230 109 3 0 chr3 12945424 12945718 -205091440 + AluSp SINE Alu 1 295 -18 655 189 24 0 chr3 12945735 12945862 -205091296 - MER94 DNA DNA -4 130 1 30 0 0 0 chr3 12946062 12946092 -205091066 + AT_rich Low_complexity Low_complexity 1 30 0 285 185 266 81 chr3 12946160 12946468 -205090690 - L1MC5 LINE L1 -399 7562 7198 1292 157 114 12 chr3 12946479 12946822 -205090336 - Charlie1 DNA MER1_type -41 2720 2343 1528 240 53 32 chr3 12946937 12947462 -205089696 - L1MC5 LINE L1 -813 7148 6613 1564 133 92 19 chr3 12947729 12948084 -205089074 - Tigger3(Golem) DNA MER2_type -2 3027 3 1842 124 4 4 chr3 12948583 12948850 -205088308 - AluSx SINE Alu -1 311 45 21 36 0 0 chr3 12949060 12949088 -205088070 + AT_rich Low_complexity Low_complexity 1 28 0 365 274 26 26 chr3 12949304 12949421 -205087737 + MIR SINE MIR 146 262 0 21 57 0 0 chr3 12949630 12949665 -205087493 + AT_rich Low_complexity Low_complexity 1 35 0 1677 183 3 37 chr3 12950093 12950416 -205086742 - AluJo SINE Alu 0 312 1 490 213 127 27 chr3 12950422 12950611 -205086547 + L1MC5 LINE L1 7687 7902 -59 707 189 8 0 chr3 12950611 12950733 -205086425 - FLAM_C SINE Alu -10 123 1 490 213 127 27 chr3 12950733 12950764 -205086394 + L1MC5 LINE L1 7902 7929 -32 324 0 0 0 chr3 12951355 12951391 -205085767 + (TG)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr3 12951391 12951412 -205085746 + AT_rich Low_complexity Low_complexity 1 21 0 2111 104 4 0 chr3 12951466 12951780 -205085378 - AluSg SINE Alu 0 315 1 22 0 0 0 chr3 12952520 12952542 -205084616 + AT_rich Low_complexity Low_complexity 1 22 0 1264 166 107 45 chr3 12953278 12953568 -205083590 - AluJo SINE Alu -4 308 1 1034 147 16 27 chr3 12953583 12953767 -205083391 - AluJb SINE Alu -15 297 116 342 206 162 29 chr3 12954499 12954635 -205082523 + L1MC5 LINE L1 7760 7913 -48 21 36 0 0 chr3 12954644 12954672 -205082486 + AT_rich Low_complexity Low_complexity 1 28 0 2401 76 0 0 chr3 12955189 12955490 -205081668 - AluY SINE Alu -10 301 1 30 27 0 0 chr3 12955495 12955532 -205081626 + AT_rich Low_complexity Low_complexity 1 37 0 2216 53 0 28 chr3 12955643 12955925 -205081233 - AluY SINE Alu -9 302 29 1991 99 0 0 chr3 12956269 12956522 -205080636 + AluSq SINE Alu 44 296 -17 2018 102 0 0 chr3 12956578 12956832 -205080326 - AluSq SINE Alu -59 254 1 957 178 38 0 chr3 12957125 12957282 -205079876 + AluJb SINE Alu 137 299 -13 287 302 94 0 chr3 12958759 12958855 -205078303 - MIR SINE MIR -102 160 56 280 301 115 18 chr3 12958890 12959003 -205078155 - MIR SINE MIR -66 142 19 942 106 8 8 chr3 12959011 12959143 -205078015 - FLAM_C SINE Alu -1 132 1 23 33 0 0 chr3 12959742 12959772 -205077386 + AT_rich Low_complexity Low_complexity 1 30 0 271 239 0 37 chr3 12961215 12961324 -205075834 + CT-rich Low_complexity Low_complexity 4 108 0 476 269 94 29 chr3 12962323 12962494 -205074664 - L2 LINE L2 -4 3309 3128 2328 115 0 6 chr3 12962757 12963069 -205074089 - AluSq SINE Alu -3 310 1 1357 148 15 0 chr3 12963281 12963484 -205073674 - AluSq SINE Alu -10 303 98 1925 149 3 34 chr3 12963929 12964104 -205073054 - AluJb SINE Alu 0 312 150 2312 92 14 0 chr3 12964104 12964397 -205072761 - AluSx SINE Alu -14 298 2 1925 149 3 34 chr3 12964397 12964543 -205072615 - AluJb SINE Alu -162 150 1 1501 199 7 14 chr3 12964614 12964891 -205072267 - AluJb SINE Alu -37 275 1 2099 130 10 7 chr3 12964972 12965271 -205071887 + AluSq SINE Alu 1 300 -13 632 137 0 0 chr3 12965768 12965863 -205071295 - L1MC1 LINE L1 -17 6316 6222 189 132 0 0 chr3 12968125 12968163 -205068995 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 21 36 0 0 chr3 12969147 12969175 -205067983 + AT_rich Low_complexity Low_complexity 1 28 0 525 283 107 30 chr3 12970627 12970860 -205066298 + MIR SINE MIR 12 262 0 2393 85 7 0 chr3 12972668 12972974 -205064184 + AluSp SINE Alu 1 308 -5 252 0 0 0 chr3 12975223 12975251 -205061907 + (TG)n Simple_repeat Simple_repeat 2 29 0 2354 98 0 0 chr3 12975421 12975718 -205061440 + AluSx SINE Alu 1 297 -15 1219 185 19 9 chr3 12976416 12976632 -205060526 - MER20 DNA MER1_type 0 219 2 376 319 71 24 chr3 12977867 12978036 -205059122 - MIR3 SINE MIR -11 197 21 1419 178 29 25 chr3 12978634 12978909 -205058249 + AluJo SINE Alu 7 282 -30 26 0 0 0 chr3 12979051 12979077 -205058081 + AT_rich Low_complexity Low_complexity 1 26 0 2131 106 0 14 chr3 12980456 12980748 -205056410 + AluSg SINE Alu 1 288 -22 2131 114 7 7 chr3 12981482 12981779 -205055379 + AluSc SINE Alu 1 297 -12 1801 147 52 0 chr3 12982310 12982596 -205054562 + AluJb SINE Alu 2 302 -10 30 27 0 0 chr3 12983571 12983608 -205053550 + AT_rich Low_complexity Low_complexity 1 37 0 207 0 0 0 chr3 12983666 12983689 -205053469 + (T)n Simple_repeat Simple_repeat 1 23 0 2338 87 3 0 chr3 12983707 12984007 -205053151 + AluY SINE Alu 2 302 -9 180 176 0 0 chr3 12984018 12984052 -205053106 + GA-rich Low_complexity Low_complexity 3 36 0 2276 91 3 0 chr3 12984218 12984504 -205052654 + AluY SINE Alu 1 287 -24 21 36 0 0 chr3 12984504 12984532 -205052626 + AT_rich Low_complexity Low_complexity 1 28 0 26 64 0 0 chr3 12984560 12984607 -205052551 + AT_rich Low_complexity Low_complexity 1 47 0 23 54 0 0 chr3 12984926 12984963 -205052195 + AT_rich Low_complexity Low_complexity 1 37 0 715 211 8 8 chr3 12985153 12985276 -205051882 + FLAM_A SINE Alu 1 123 -10 22 0 0 0 chr3 12985315 12985337 -205051821 + AT_rich Low_complexity Low_complexity 1 22 0 1489 181 38 14 chr3 12985345 12985638 -205051520 + AluJo SINE Alu 1 300 -12 268 274 32 65 chr3 12985754 12985878 -205051280 + L1ME LINE L1 5572 5691 -430 2383 108 12 0 chr3 12985878 12986202 -205050956 - HSMAR1 DNA Mariner -2 1285 958 372 61 16 55 chr3 12986500 12986746 -205050412 + AluY SINE Alu 1 301 0 10994 96 6 12 chr3 12987061 12988656 -205048502 + L1P LINE L1 2119 3703 -2443 12159 97 9 32 chr3 12988760 12990670 -205046488 - L1P3 LINE L1 -4547 1914 51 480 305 106 4 chr3 12990960 12991091 -205046067 - MIR SINE MIR -2 260 144 2240 155 12 54 chr3 12991091 12991321 -205045837 - MLT1B LTR MaLR 0 390 183 2259 113 0 0 chr3 12991321 12991622 -205045536 - AluSx SINE Alu -11 301 1 2240 155 12 54 chr3 12991622 12991798 -205045360 - MLT1B LTR MaLR -207 183 1 480 305 106 4 chr3 12991798 12991902 -205045256 - MIR SINE MIR -118 144 1 713 177 0 54 chr3 12992081 12992211 -205044947 + AluJo SINE Alu 38 160 -152 513 235 84 47 chr3 12992478 12992691 -205044467 + MIR SINE MIR 34 254 -8 507 184 11 132 chr3 12992918 12993092 -205044066 + MER5A DNA MER1_type 3 155 -34 231 88 0 0 chr3 12993229 12993263 -205043895 + (TG)n Simple_repeat Simple_repeat 2 35 0 1423 174 38 50 chr3 12993820 12994159 -205042999 + LTR37A LTR ERV1 92 426 0 2823 129 60 19 chr3 12994178 12994592 -205042566 + Charlie1 DNA MER1_type 1835 2273 -488 1992 120 3 19 chr3 12994592 12994900 -205042258 + AluSx SINE Alu 1 303 -9 2823 129 60 19 chr3 12994900 12994967 -205042191 + Charlie1 DNA MER1_type 2273 2336 -425 344 147 15 15 chr3 12995074 12995142 -205042016 - L1MB2 LINE L1 -98 6073 6006 2246 81 0 3 chr3 12995144 12995428 -205041730 + AluY SINE Alu 1 283 -28 441 0 0 0 chr3 12995428 12995477 -205041681 + (CA)n Simple_repeat Simple_repeat 2 50 0 617 231 20 7 chr3 12995477 12995624 -205041534 + MER39 LTR ERV1 540 688 -19 2122 136 0 0 chr3 12995693 12995987 -205041171 + AluSx SINE Alu 1 294 -18 459 365 23 23 chr3 12997040 12997300 -205039858 - MIR SINE MIR -2 260 1 1026 154 0 6 chr3 12998337 12998499 -205038659 + MLT1A2 LTR MaLR 1 161 -213 663 225 8 0 chr3 12998511 12998640 -205038518 + FLAM_C SINE Alu 3 132 -11 1264 185 5 14 chr3 12998655 12998877 -205038281 - AluJo SINE Alu -92 220 1 204 268 36 0 chr3 12998881 12998937 -205038221 - MIR SINE MIR -198 64 7 821 137 0 8 chr3 12998988 12999112 -205038046 - AluJo SINE Alu -178 134 12 2293 94 0 7 chr3 12999494 12999792 -205037366 - AluSx SINE Alu -16 296 1 563 358 46 43 chr3 13000678 13001002 -205036156 + L2 LINE L2 2933 3257 -15 2035 154 0 0 chr3 13001008 13001314 -205035844 + AluSx SINE Alu 1 306 -6 2250 121 0 0 chr3 13001319 13001649 -205035509 + AluSx SINE Alu 1 330 0 339 181 4 2 chr3 13001905 13002154 -205035004 + AluJo SINE Alu 1 298 -4 434 265 77 8 chr3 13003053 13003170 -205033988 - L2 LINE L2 -1 3312 3188 6268 100 20 0 chr3 13003216 13004261 -205032897 - L1PA7 LINE L1 0 6154 5143 718 239 56 0 chr3 13004894 13005074 -205032084 - MIR SINE MIR -59 203 14 2142 110 17 3 chr3 13005294 13005585 -205031573 + AluSg SINE Alu 1 295 -15 664 171 267 0 chr3 13006585 13006731 -205030427 - MER5A DNA MER1_type -4 185 1 321 148 0 0 chr3 13007179 13007233 -205029925 + Alu SINE Alu 249 302 0 445 261 43 9 chr3 13007446 13007561 -205029597 - MIR SINE MIR -62 200 82 999 266 84 68 chr3 13008378 13008617 -205028541 + MLT1K LTR MaLR 189 438 -150 2982 116 19 7 chr3 13008617 13009038 -205028120 + MSTA LTR MaLR 3 428 0 999 266 84 68 chr3 13009038 13009192 -205027966 + MLT1K LTR MaLR 438 588 0 1276 216 150 41 chr3 13009292 13009749 -205027409 + MLT1G3 LTR MaLR 21 593 0 427 201 223 14 chr3 13009762 13009901 -205027257 + MER117 DNA MER1_type 4 171 -26 2385 117 44 0 chr3 13009967 13010333 -205026825 + L1PA13 LINE L1 5799 6179 0 548 217 255 27 chr3 13010385 13010569 -205026589 + MIR SINE MIR 23 248 -14 2248 117 9 20 chr3 13010764 13011105 -205026053 + MER1B DNA MER1_type 1 337 -2 1926 214 87 37 chr3 13011140 13011678 -205025480 + L1ME1 LINE L1 5600 6164 -2 492 205 73 40 chr3 13011686 13011837 -205025321 + MER103 DNA DNA 11 166 0 234 0 0 0 chr3 13012133 13012159 -205024999 + (CA)n Simple_repeat Simple_repeat 2 27 0 3193 105 16 2 chr3 13012200 13012628 -205024530 - MER57B LTR ERV1 0 434 1 12919 104 91 59 chr3 13012628 13013005 -205024153 - MER57B-int LTR ERV1 0 7537 7173 2421 68 0 3 chr3 13013005 13013300 -205023858 + AluY SINE Alu 1 294 -17 12919 104 91 59 chr3 13013300 13015084 -205022074 - MER57B-int LTR ERV1 -364 7173 5307 6014 131 57 29 chr3 13015075 13016737 -205020421 - MER57B-int LTR ERV1 -1702 4273 2186 * 331 78 59 0 chr3 13016733 13016784 -205020374 - MER57B-int LTR ERV1 -3726 2220 2167 * 4767 150 55 21 chr3 13016760 13018275 -205018883 - MER57B-int LTR ERV1 -4159 2371 288 4346 140 29 6 chr3 13018272 13018929 -205018229 - MER57B-int LTR ERV1 -6865 672 1 * 3043 120 21 2 chr3 13018929 13019355 -205017803 - MER57B LTR ERV1 0 434 1 389 266 0 39 chr3 13019370 13019498 -205017660 + L1ME4a LINE L1 5987 6109 -12 477 237 50 36 chr3 13019551 13019690 -205017468 - MIR SINE MIR -5 257 117 578 235 150 43 chr3 13019895 13020335 -205016823 + MLT1H LTR MaLR 3 555 0 181 0 0 0 chr3 13020448 13020468 -205016690 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2085 131 3 0 chr3 13020468 13020751 -205016407 - AluSx SINE Alu -1 303 1 22 0 0 0 chr3 13021438 13021460 -205015698 + AT_rich Low_complexity Low_complexity 1 22 0 228 184 0 0 chr3 13021990 13022039 -205015119 + CT-rich Low_complexity Low_complexity 2 50 0 190 301 118 11 chr3 13022164 13022257 -205014901 - L2 LINE L2 -8 3264 3162 32 0 0 0 chr3 13022370 13022402 -205014756 + AT_rich Low_complexity Low_complexity 1 32 0 230 140 53 0 chr3 13022489 13022546 -205014612 + L1MD3 LINE L1 7936 7995 0 342 250 93 9 chr3 13023125 13023233 -205013925 + MIR SINE MIR 64 180 -82 291 194 16 0 chr3 13023303 13023365 -205013793 - Charlie8 DNA MER1_type -1008 1409 1347 533 214 219 16 chr3 13023366 13023553 -205013605 - MLT1A2 LTR MaLR 0 549 325 397 220 83 133 chr3 13023554 13023795 -205013363 - Charlie8 DNA MER1_type -2186 231 3 724 173 0 8 chr3 13023912 13024039 -205013119 + MER5A DNA MER1_type 1 126 -63 664 240 0 0 chr3 13024056 13024185 -205012973 - MER5B DNA MER1_type 0 178 50 260 87 65 0 chr3 13024526 13024572 -205012586 + CT-rich Low_complexity Low_complexity 3 51 0 1542 201 7 0 chr3 13024572 13024846 -205012312 - AluJo SINE Alu -36 276 1 211 327 78 65 chr3 13024930 13025083 -205012075 - L2 LINE L2 -292 2980 2826 392 157 135 22 chr3 13025129 13025218 -205011940 - MLT2D LTR ERVL -1 396 298 801 144 0 8 chr3 13025232 13025350 -205011808 - FLAM_C SINE Alu -13 130 14 1297 174 64 77 chr3 13025355 13025682 -205011476 - MLT2D LTR ERVL -91 323 1 1596 216 92 22 chr3 13025723 13026093 -205011065 + MSTD LTR MaLR 1 396 0 286 315 164 25 chr3 13026456 13026859 -205010299 - L2 LINE L2 -665 2649 2191 300 281 48 68 chr3 13027413 13027559 -205009599 + MIR SINE MIR 25 167 -95 216 325 68 34 chr3 13027582 13027699 -205009459 - L2 LINE L2 -5 3308 3188 772 240 168 41 chr3 13027798 13028090 -205009068 - MER102a DNA MER1_type 0 330 2 1219 217 53 53 chr3 13029220 13029579 -205007579 - MLT1A2 LTR MaLR -15 359 1 180 0 0 0 chr3 13029987 13030007 -205007151 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 934 102 0 0 chr3 13030012 13030130 -205007028 - AluSq/x SINE Alu -194 118 1 2229 121 0 0 chr3 13030400 13030707 -205006451 + AluSx SINE Alu 1 307 -5 227 305 62 23 chr3 13030778 13030906 -205006252 + L2 LINE L2 1889 2021 -1293 1456 160 95 0 chr3 13032013 13032276 -205004882 - AluJb SINE Alu -24 288 1 25 0 0 0 chr3 13032284 13032309 -205004849 + AT_rich Low_complexity Low_complexity 1 25 0 2154 116 0 13 chr3 13032372 13032503 -205004655 + AluSx SINE Alu 5 136 -176 2308 93 16 7 chr3 13032503 13032813 -205004345 + AluSq SINE Alu 1 313 0 2154 116 0 13 chr3 13032813 13032992 -205004166 + AluSx SINE Alu 136 311 -1 2413 75 0 7 chr3 13033084 13033376 -205003782 + AluSc SINE Alu 1 290 -19 242 250 69 0 chr3 13033388 13033460 -205003698 - L1ME LINE L1 -513 5608 5532 1422 176 55 24 chr3 13033538 13033828 -205003330 + AluJo SINE Alu 1 299 -13 2244 114 0 9 chr3 13033830 13034145 -205003013 + AluSx SINE Alu 1 312 0 1053 163 11 0 chr3 13034569 13034753 -205002405 - AluJo SINE Alu -6 306 121 1936 98 0 4 chr3 13035077 13035331 -205001827 - AluSq SINE Alu -7 306 54 718 89 0 0 chr3 13035331 13035421 -205001737 - AluS SINE Alu -221 91 2 889 196 31 0 chr3 13035491 13035654 -205001504 - AluJb SINE Alu -9 303 136 26 30 0 0 chr3 13035676 13035709 -205001449 + AT_rich Low_complexity Low_complexity 1 33 0 260 237 0 26 chr3 13036620 13036696 -205000462 + GA-rich Low_complexity Low_complexity 3 76 0 23 68 0 0 chr3 13038025 13038069 -204999089 + AT_rich Low_complexity Low_complexity 1 44 0 298 190 0 52 chr3 13038459 13038517 -204998641 - MIR SINE MIR -11 251 197 478 248 39 31 chr3 13038521 13038650 -204998508 - L2 LINE L2 -1 3312 3183 245 245 21 21 chr3 13038671 13038765 -204998393 + GA-rich Low_complexity Low_complexity 3 96 0 584 270 155 9 chr3 13039192 13039530 -204997628 - MLT1H LTR MaLR -15 534 122 238 304 43 0 chr3 13039636 13039728 -204997430 - MIR SINE MIR -66 196 101 1437 142 52 4 chr3 13039905 13040124 -204997034 + MER7A DNA MER2_type 1 228 -118 661 243 83 69 chr3 13040124 13040412 -204996746 + MER101B LTR ERV1 1 292 -278 258 206 40 103 chr3 13040459 13040585 -204996573 + MER101 LTR ERV1 328 445 -29 2309 110 0 0 chr3 13040600 13040901 -204996257 - AluSx SINE Alu -11 301 1 411 213 12 0 chr3 13040932 13041012 -204996146 + MER7A DNA MER2_type 257 337 0 507 264 153 32 chr3 13041012 13041228 -204995930 + MIR SINE MIR 15 256 -6 387 222 37 74 chr3 13042499 13042661 -204994497 + HAL1 LINE L1 2263 2418 -89 2473 62 0 10 chr3 13042722 13043030 -204994128 + AluY SINE Alu 1 305 -6 251 54 27 0 chr3 13043635 13043672 -204993486 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 1072 181 51 0 chr3 13044335 13044512 -204992646 + MER5A DNA MER1_type 1 186 -3 1051 253 78 38 chr3 13044523 13045021 -204992137 - MER113 DNA MER1_type? 0 521 4 357 24 0 0 chr3 13045037 13045079 -204992079 + (TG)n Simple_repeat Simple_repeat 1 42 0 256 282 113 0 chr3 13045692 13045816 -204991342 - MIR SINE MIR -15 247 110 702 270 32 10 chr3 13045818 13046097 -204991061 - LTR16B LTR ERVL -2 462 88 191 0 0 94 chr3 13046146 13046178 -204990980 + (T)n Simple_repeat Simple_repeat 1 29 0 7535 58 0 5 chr3 13046192 13047535 -204989623 - L1PA6 LINE L1 0 6154 4820 2097 134 0 3 chr3 13047761 13048059 -204989099 - AluJb SINE Alu -15 297 1 282 267 59 0 chr3 13048540 13048641 -204988517 - HAL1b LINE L1 -798 550 444 1896 178 0 3 chr3 13048648 13048941 -204988217 - AluJb SINE Alu -20 292 1 1407 137 4 26 chr3 13048941 13049174 -204987984 - MER2 DNA MER2_type -107 238 11 596 273 148 14 chr3 13049839 13050048 -204987110 + MIR SINE MIR 14 250 -12 2261 76 3 23 chr3 13050073 13050376 -204986782 - AluY SINE Alu -14 297 1 2258 117 0 3 chr3 13051019 13051319 -204985839 - AluSx SINE Alu -12 300 2 316 286 38 23 chr3 13051944 13052111 -204985047 - HAL1b LINE L1 -2 6119 1222 2205 115 0 0 chr3 13052142 13052430 -204984728 - AluSx SINE Alu -24 288 1 22 0 0 0 chr3 13053889 13053911 -204983247 + AT_rich Low_complexity Low_complexity 1 22 0 1570 216 92 24 chr3 13054578 13054949 -204982209 - MSTD LTR MaLR 0 396 1 1297 174 64 77 chr3 13054990 13055317 -204981841 + MLT2D LTR ERVL 1 323 -91 897 123 0 0 chr3 13055322 13055444 -204981714 + AluJb SINE Alu 14 135 -177 2185 109 7 0 chr3 13055444 13055738 -204981420 + AluSx SINE Alu 1 296 -16 1975 146 7 7 chr3 13055763 13056064 -204981094 + AluJo SINE Alu 1 301 -11 2153 134 3 7 chr3 13056202 13056508 -204980650 + AluSx SINE Alu 1 305 -7 2095 107 7 0 chr3 13056529 13056809 -204980349 + AluSx SINE Alu 11 292 -20 772 240 168 41 chr3 13057775 13058067 -204979091 + MER102a DNA MER1_type 2 330 0 216 325 68 34 chr3 13058166 13058283 -204978875 + L2 LINE L2 3188 3308 -5 300 281 48 68 chr3 13058306 13058452 -204978706 - MIR SINE MIR -95 167 25 286 315 164 25 chr3 13059006 13059409 -204977749 + L2 LINE L2 2191 2649 -665 1596 216 92 22 chr3 13059772 13060142 -204977016 - MSTD LTR MaLR 0 396 1 1297 174 64 77 chr3 13060183 13060510 -204976648 + MLT2D LTR ERVL 1 323 -91 801 144 0 8 chr3 13060515 13060633 -204976525 + FLAM_C SINE Alu 14 130 -13 392 157 135 22 chr3 13060647 13060736 -204976422 + MLT2D LTR ERVL 298 396 -1 211 327 78 65 chr3 13060782 13060935 -204976223 + L2 LINE L2 2826 2980 -292 1542 201 7 0 chr3 13061019 13061293 -204975865 + AluJo SINE Alu 1 276 -36 260 87 65 0 chr3 13061293 13061339 -204975819 + GA-rich Low_complexity Low_complexity 3 51 0 664 240 0 0 chr3 13061680 13061809 -204975349 + MER5B DNA MER1_type 50 178 0 724 173 0 8 chr3 13061826 13061953 -204975205 - MER5A DNA MER1_type -63 126 1 397 220 83 133 chr3 13062070 13062311 -204974847 + MER102a DNA MER1_type 3 231 -99 533 214 219 16 chr3 13062312 13062499 -204974659 + MLT1H LTR MaLR 325 549 0 291 194 16 0 chr3 13062500 13062562 -204974596 + MER102a DNA MER1_type 249 311 -19 342 250 93 9 chr3 13062632 13062740 -204974418 - MIR SINE MIR -82 180 64 230 140 53 0 chr3 13063319 13063376 -204973782 - L1MD3 LINE L1 0 7995 7936 32 0 0 0 chr3 13063463 13063495 -204973663 + AT_rich Low_complexity Low_complexity 1 32 0 190 301 118 11 chr3 13063608 13063701 -204973457 + L2 LINE L2 3162 3264 -8 228 184 0 0 chr3 13063826 13063875 -204973283 + GA-rich Low_complexity Low_complexity 2 50 0 22 0 0 0 chr3 13064405 13064427 -204972731 + AT_rich Low_complexity Low_complexity 1 22 0 2104 131 3 0 chr3 13065114 13065397 -204971761 + AluSx SINE Alu 1 284 -28 181 0 0 0 chr3 13065397 13065417 -204971741 + (TAA)n Simple_repeat Simple_repeat 2 180 0 578 244 128 47 chr3 13065530 13065970 -204971188 - MLT1H LTR MaLR 0 549 3 438 237 50 36 chr3 13066175 13066314 -204970844 + MIR SINE MIR 117 257 -5 379 266 0 39 chr3 13066367 13066495 -204970663 - L1ME4a LINE L1 -12 6109 5987 2891 124 19 0 chr3 13066510 13066936 -204970222 + MER57B LTR ERV1 1 434 0 4345 140 29 6 chr3 13066936 13067593 -204969565 + MER57B-int LTR ERV1 1 672 -6865 * 4769 146 59 21 chr3 13067590 13069132 -204968026 + PABL_A-int LTR ERV1 288 2220 -3726 * 5986 132 57 21 chr3 13069128 13070788 -204966370 + PABL_A-int LTR ERV1 2186 4041 -1702 * 12739 109 32 3 chr3 13070779 13072563 -204964595 + PABL_A-int LTR ERV1 5307 7143 -394 2279 86 3 0 chr3 13072563 13072855 -204964303 - AluSg SINE Alu -17 293 1 22 0 0 0 chr3 13073595 13073617 -204963541 + AT_rich Low_complexity Low_complexity 1 22 0 1259 166 107 45 chr3 13074353 13074643 -204962515 - AluJo SINE Alu -4 308 1 1036 147 16 27 chr3 13074658 13074842 -204962316 - AluJb SINE Alu -15 297 116 240 170 21 0 chr3 13075394 13075441 -204961717 - L1M2 LINE L1 -5088 1761 1714 398 176 162 29 chr3 13075574 13075710 -204961448 + L1MC5 LINE L1 7760 7913 -48 21 36 0 0 chr3 13075719 13075747 -204961411 + AT_rich Low_complexity Low_complexity 1 28 0 1681 86 0 26 chr3 13076264 13076496 -204960662 - AluSc SINE Alu -16 293 68 492 283 80 32 chr3 13076818 13077069 -204960089 - L2 LINE L2 -619 2695 2433 2497 62 0 10 chr3 13077474 13077782 -204959376 - AluY SINE Alu -6 305 1 422 237 34 62 chr3 13077842 13078019 -204959139 - HAL1 LINE L1 -89 2418 2247 1155 169 59 75 chr3 13079030 13079102 -204958056 - L1M4 LINE L1 -538 5636 5564 1997 161 14 30 chr3 13079102 13079463 -204957695 - THE1A LTR MaLR 0 355 1 1155 169 59 75 chr3 13079463 13079698 -204957460 - L1M4 LINE L1 -610 5564 5327 1796 183 3 7 chr3 13079698 13079998 -204957160 - AluJb SINE Alu -13 299 1 1155 169 59 75 chr3 13079998 13080063 -204957095 - L1M4 LINE L1 -847 5327 5263 3969 173 20 6 chr3 13080104 13080757 -204956401 + MER72 LTR ERV1 1 662 -60 2074 143 20 0 chr3 13080757 13081058 -204956100 - AluSx SINE Alu -5 307 1 2578 68 0 0 chr3 13081071 13081378 -204955780 - AluY SINE Alu -4 307 1 200 162 0 0 chr3 13081979 13082016 -204955142 - L2 LINE L2 -3 3310 3274 25 31 0 0 chr3 13082811 13082843 -204954315 + AT_rich Low_complexity Low_complexity 1 32 0 481 260 10 0 chr3 13083641 13083745 -204953413 + FLAM_C SINE Alu 7 111 -32 605 228 46 85 chr3 13084185 13084251 -204952907 - MLT1J LTR MaLR -5 506 439 1428 165 9 91 chr3 13084251 13084591 -204952567 + AluJo SINE Alu 1 312 0 605 228 46 85 chr3 13084591 13084631 -204952527 - MLT1J LTR MaLR -72 439 399 2402 49 0 7 chr3 13084631 13084949 -204952209 + AluY SINE Alu 1 316 0 605 228 46 85 chr3 13084949 13085121 -204952037 - MLT1J LTR MaLR -112 399 237 2326 97 0 3 chr3 13085835 13086135 -204951023 + AluSx SINE Alu 1 299 -13 869 163 44 12 chr3 13086682 13086842 -204950316 - AluJb SINE Alu -146 166 2 2213 68 64 20 chr3 13086895 13087191 -204949967 - AluY SINE Alu -2 309 1 2182 111 0 55 chr3 13087206 13087531 -204949627 - AluSg SINE Alu -1 309 3 2200 114 7 3 chr3 13087568 13087876 -204949282 - AluY SINE Alu -2 309 1 325 161 32 0 chr3 13088120 13088182 -204948976 + MLT1K LTR MaLR 508 571 -17 2100 119 19 10 chr3 13088274 13088769 -204948389 + AluSq SINE Alu 1 313 0 387 331 22 11 chr3 13088801 13088979 -204948179 + MIR SINE MIR 33 212 -50 848 217 61 35 chr3 13089351 13089434 -204947724 - MIR SINE MIR -21 241 162 1957 162 39 21 chr3 13089434 13089817 -204947341 + MLT1B LTR MaLR 1 390 0 848 217 61 35 chr3 13089817 13089963 -204947195 - MIR SINE MIR -100 162 6 1936 173 0 0 chr3 13090764 13091076 -204946082 + AluJo SINE Alu 1 312 0 400 331 66 36 chr3 13091500 13091805 -204945353 + HUERS-P1 LTR ERV1 5946 6259 -4 375 96 0 0 chr3 13091807 13091859 -204945299 + LTR26 LTR ERV1 1 52 -551 600 144 19 0 chr3 13091983 13092087 -204945071 - L1M4 LINE L1 -1366 4780 4675 968 188 6 0 chr3 13092087 13092257 -204944901 - MLT1F1 LTR MaLR -392 175 5 1495 278 94 10 chr3 13092261 13092870 -204944288 - L1MC4a LINE L1 -1889 5919 5260 1459 144 8 27 chr3 13093503 13093766 -204943392 + AluSx SINE Alu 28 285 -27 210 292 0 0 chr3 13093973 13094021 -204943137 + polypyrimidine Low_complexity Low_complexity 4 51 0 1149 144 5 51 chr3 13094507 13094642 -204942516 + AluJb SINE Alu 1 126 -186 2015 68 114 11 chr3 13094642 13094923 -204942235 + AluY SINE Alu 1 310 -1 1149 144 5 51 chr3 13094923 13094982 -204942176 + AluJb SINE Alu 126 186 -126 201 162 0 0 chr3 13095200 13095237 -204941921 + A-rich Low_complexity Low_complexity 1 37 0 255 31 0 0 chr3 13095380 13095412 -204941746 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 234 150 0 0 chr3 13095723 13095763 -204941395 + (A)n Simple_repeat Simple_repeat 1 40 0 209 203 34 34 chr3 13096604 13096663 -204940495 + G-rich Low_complexity Low_complexity 3 61 0 286 198 40 28 chr3 13096666 13096921 -204940237 + GA-rich Low_complexity Low_complexity 1 258 0 1109 190 19 9 chr3 13098058 13098274 -204938884 + MER20 DNA MER1_type 2 219 0 8142 51 57 1 chr3 13098924 13099946 -204937212 + SVA Other Other 330 1406 0 817 163 80 21 chr3 13099963 13100161 -204936997 - L1ME LINE L1 -723 5443 5236 677 103 62 0 chr3 13100164 13100282 -204936876 - LTR49 LTR ERV1 -3 592 486 616 190 10 0 chr3 13100288 13100388 -204936770 + LTR49-int LTR ERV1 1 101 -6230 2112 134 0 7 chr3 13100389 13100694 -204936464 - AluSx SINE Alu -9 303 1 406 255 6 56 chr3 13101057 13101086 -204936072 + MIR SINE MIR 12 41 -221 1910 163 0 3 chr3 13101086 13101381 -204935777 + AluJo SINE Alu 4 297 -15 406 255 6 56 chr3 13101381 13101512 -204935646 + MIR SINE MIR 41 164 -98 301 218 150 54 chr3 13101676 13101823 -204935335 - MIR3 SINE MIR -12 196 36 230 288 123 0 chr3 13101845 13101918 -204935240 - L2 LINE L2 -3 3310 3229 2337 94 0 3 chr3 13102047 13102344 -204934814 - AluSx SINE Alu -16 296 1 1084 214 23 9 chr3 13102442 13102616 -204934542 - AluJo SINE Alu -5 307 128 258 32 0 0 chr3 13102616 13102647 -204934511 + (TTTTA)n Simple_repeat Simple_repeat 3 33 0 1084 214 23 9 chr3 13102647 13102692 -204934466 - AluJo SINE Alu -184 128 85 393 138 17 0 chr3 13102692 13102750 -204934408 - AluSx SINE Alu -52 248 190 679 74 11 11 chr3 13102751 13102846 -204934312 - AluSx SINE Alu -174 138 44 667 167 32 8 chr3 13102849 13102975 -204934183 - AluJo/FLAM SINE Alu -172 130 2 26 64 0 0 chr3 13103684 13103731 -204933427 + AT_rich Low_complexity Low_complexity 1 47 0 27 29 0 0 chr3 13103759 13103793 -204933365 + AT_rich Low_complexity Low_complexity 1 34 0 1103 222 64 53 chr3 13105101 13105400 -204931758 - L1M4 LINE L1 -1898 4248 3943 2340 89 0 13 chr3 13105400 13105704 -204931454 - AluSc SINE Alu -9 300 1 1103 222 64 53 chr3 13105704 13105764 -204931394 - L1M4 LINE L1 -2203 3943 3885 1100 225 99 48 chr3 13105764 13106232 -204930926 - LTR8A LTR ERV1 0 727 117 1772 150 21 0 chr3 13107229 13107509 -204929649 + AluJo SINE Alu 1 286 -26 2199 107 0 10 chr3 13107535 13107824 -204929334 + AluSx SINE Alu 1 286 -26 239 83 83 48 chr3 13108133 13108217 -204928941 + (TTGTG)n Simple_repeat Simple_repeat 2 88 0 2097 123 0 7 chr3 13108549 13108876 -204928282 - AluJb SINE Alu 0 312 1 626 262 22 22 chr3 13108883 13109066 -204928092 + MIR SINE MIR 29 211 -51 1560 260 135 39 chr3 13109413 13109947 -204927211 + MLT1K LTR MaLR 4 588 0 2346 87 0 13 chr3 13110184 13110484 -204926674 + AluSq SINE Alu 1 296 -17 2369 145 15 3 chr3 13110797 13110929 -204926229 + L1P5 LINE L1 5012 5141 -1013 2038 119 0 14 chr3 13110929 13111239 -204925919 + AluSx SINE Alu 1 306 0 2369 145 15 3 chr3 13111239 13111679 -204925479 + L1P5 LINE L1 5141 5590 -564 1969 131 3 10 chr3 13111696 13111993 -204925165 - AluSx SINE Alu -17 295 1 264 81 0 0 chr3 13111993 13112030 -204925128 + MLT1F1 LTR MaLR 530 566 -1 25 31 0 0 chr3 13112243 13112275 -204924883 + AT_rich Low_complexity Low_complexity 1 32 0 2076 130 3 0 chr3 13112314 13112629 -204924529 + AluSx SINE Alu 1 312 0 584 249 64 118 chr3 13112749 13113062 -204924096 + L2 LINE L2 2966 3261 -11 282 303 13 34 chr3 13113073 13113232 -204923926 + GA-rich Low_complexity Low_complexity 1 155 0 183 194 0 0 chr3 13114234 13114270 -204922888 + MIR SINE MIR 109 144 -118 934 187 0 0 chr3 13114389 13114544 -204922614 + FRAM SINE Alu 1 155 -11 189 0 0 0 chr3 13114572 13114593 -204922565 + (A)n Simple_repeat Simple_repeat 1 21 0 211 275 46 46 chr3 13114956 13115065 -204922093 - MIR3 SINE MIR -10 198 90 442 204 34 109 chr3 13115114 13115261 -204921897 - L2 LINE L2 0 3272 3137 258 32 0 0 chr3 13115647 13115678 -204921480 + (TC)n Simple_repeat Simple_repeat 2 32 0 225 0 0 0 chr3 13115680 13115705 -204921453 + (CA)n Simple_repeat Simple_repeat 1 25 0 652 266 91 36 chr3 13115716 13115990 -204921168 + MLT1K LTR MaLR 138 426 -162 2194 112 3 0 chr3 13115990 13116285 -204920873 + AluSx SINE Alu 1 296 -16 2129 98 4 4 chr3 13116415 13116690 -204920468 + AluSx SINE Alu 14 288 -24 266 119 0 24 chr3 13116708 13116750 -204920408 + Tigger1 DNA MER2_type 1579 1619 -799 828 229 0 0 chr3 13117047 13117191 -204919967 + FRAM SINE Alu 9 152 -24 4738 137 37 18 chr3 13117369 13118188 -204918970 - L1MB4 LINE L1 -10 6170 5337 2133 103 31 0 chr3 13118190 13118480 -204918678 + AluSx SINE Alu 1 299 -13 1746 218 8 8 chr3 13118504 13118894 -204918264 - L1MB4 LINE L1 -940 5206 4817 1157 127 12 0 chr3 13118896 13119062 -204918096 - AluSg/x SINE Alu -14 296 129 681 198 41 8 chr3 13119217 13119338 -204917820 - FLAM_C SINE Alu -17 126 2 2568 212 26 46 chr3 13119530 13120180 -204916978 - L1ME1 LINE L1 -5 6161 5525 504 262 116 39 chr3 13121020 13121253 -204915905 + MIR SINE MIR 12 262 0 2320 99 7 0 chr3 13123062 13123366 -204913792 + AluSx SINE Alu 1 306 -6 586 288 101 10 chr3 13123366 13123564 -204913594 + MIR SINE MIR 47 262 0 445 307 163 34 chr3 13123622 13124421 -204912737 - L2 LINE L2 -425 2889 1988 246 227 194 34 chr3 13124766 13124950 -204912208 - L2 LINE L2 -340 2932 2725 1146 121 10 66 chr3 13124954 13125152 -204912006 - AluJo SINE Alu -14 298 112 248 154 11 149 chr3 13125275 13125450 -204911708 - AluJo SINE Alu -147 155 5 459 280 48 11 chr3 13125454 13125643 -204911515 - L2 LINE L2 -593 2721 2526 482 249 23 81 chr3 13125811 13125902 -204911256 + MIR SINE MIR 81 159 -103 2315 95 0 0 chr3 13125902 13126197 -204910961 - AluY SINE Alu -16 295 1 482 249 23 81 chr3 13126197 13126278 -204910880 + MIR SINE MIR 159 243 -19 2087 119 0 7 chr3 13126285 13126613 -204910545 - AluSx SINE Alu 0 326 1 1960 154 77 100 chr3 13126615 13127083 -204910075 + LTR49-int LTR ERV1 734 1190 -5141 339 257 0 14 chr3 13127110 13127180 -204909978 + tRNA-Glu-GAG tRNA tRNA 7 75 0 550 115 67 5 chr3 13127234 13127338 -204909820 + LTR49-int LTR ERV1 1290 1934 -2946 2231 98 11 0 chr3 13127433 13127720 -204909438 + AluY SINE Alu 10 299 -12 3778 158 16 52 chr3 13127754 13128037 -204909121 + LTR49-int LTR ERV1 1372 1663 -4668 2248 90 0 7 chr3 13128037 13128325 -204908833 + AluSg1 SINE Alu 5 290 -19 3778 158 16 52 chr3 13128325 13128776 -204908382 + LTR49-int LTR ERV1 1663 2080 -4251 2860 197 18 42 chr3 13128781 13129399 -204907759 - LTR26 LTR ERV1 0 603 1 1453 178 7 7 chr3 13129606 13129887 -204907271 + AluSg SINE Alu 10 290 -20 1592 335 38 46 chr3 13130228 13130263 -204906895 - MER66-int LTR ERV1 -2813 4309 4275 1805 188 0 0 chr3 13130263 13130556 -204906602 + AluJo SINE Alu 3 295 -17 1592 335 38 46 chr3 13130556 13131638 -204905520 - MER66-int LTR ERV1 -2847 4275 3201 490 352 18 26 chr3 13131705 13131978 -204905180 - MER66-int LTR ERV1 -4020 3102 2832 429 100 0 0 chr3 13132050 13132110 -204905048 + Alu SINE Alu 249 308 -4 760 339 47 50 chr3 13132177 13132818 -204904340 - MER66-int LTR ERV1 -5568 1554 916 357 277 11 0 chr3 13133001 13133095 -204904063 - MER66-int LTR ERV1 -5067 1609 1515 693 237 23 92 chr3 13133434 13133696 -204903462 - MER66-int LTR ERV1 -5462 801 558 2019 61 0 8 chr3 13133875 13134122 -204903036 + AluY SINE Alu 1 245 -66 540 214 71 57 chr3 13134293 13134562 -204902596 - LTR48B LTR ERV1 -21 732 382 271 167 45 15 chr3 13134625 13134691 -204902467 - LTR48B LTR ERV1 -449 195 128 261 274 104 19 chr3 13134663 13134769 -204902389 - MER39 LTR ERV1 -582 125 11 * 1107 170 131 0 chr3 13134802 13135008 -204902150 - MER34C LTR ERV1 -352 233 1 2314 181 14 0 chr3 13135010 13135436 -204901722 + L1MB7 LINE L1 5752 6183 -1 1921 112 7 4 chr3 13135455 13135724 -204901434 + AluSp SINE Alu 11 280 -33 345 132 38 0 chr3 13135748 13135801 -204901357 + LTR49 LTR ERV1 535 589 -6 1377 197 19 104 chr3 13135803 13135856 -204901302 - L1M4 LINE L1 -904 5242 5186 2428 66 7 3 chr3 13135856 13136157 -204901001 - AluY SINE Alu -9 302 1 1377 197 19 104 chr3 13136157 13136254 -204900904 - L1M4 LINE L1 -960 5186 5082 1899 159 10 16 chr3 13136254 13136568 -204900590 - AluJo SINE Alu 0 312 1 1377 197 19 104 chr3 13136568 13136848 -204900310 - L1M4 LINE L1 -1064 5082 4848 794 216 13 0 chr3 13136835 13136988 -204900170 + L1ME LINE L1 5425 5579 -587 * 1864 176 6 6 chr3 13136988 13137300 -204899858 + AluJb SINE Alu 1 312 0 2209 132 57 75 chr3 13137382 13137820 -204899338 + LTR2B LTR ERV1 1 430 -60 30 27 0 0 chr3 13138754 13138791 -204898367 + AT_rich Low_complexity Low_complexity 1 37 0 207 0 0 0 chr3 13138849 13138872 -204898286 + (T)n Simple_repeat Simple_repeat 1 23 0 2504 46 0 36 chr3 13138890 13139196 -204897962 + AluY SINE Alu 2 296 -15 292 300 85 2 chr3 13139452 13139695 -204897463 + L1MDa LINE L1 2444 2715 -3825 580 223 12 54 chr3 13140111 13140277 -204896881 - L1ME2 LINE L1 -10 6154 5996 564 274 17 58 chr3 13140265 13140435 -204896723 + L1MDa LINE L1 2918 3073 -3467 * 1638 173 0 64 chr3 13140435 13140764 -204896394 - AluJo SINE Alu -4 308 1 564 274 17 58 chr3 13140764 13140885 -204896273 + L1MDa LINE L1 3073 3197 -3343 1091 170 0 11 chr3 13141170 13141352 -204895806 + AluJb SINE Alu 122 301 -11 23 0 0 0 chr3 13141367 13141390 -204895768 + AT_rich Low_complexity Low_complexity 1 23 0 201 266 31 62 chr3 13141447 13141511 -204895647 - MIR SINE MIR -62 146 85 368 256 115 39 chr3 13141552 13141708 -204895450 + L2 LINE L2 3136 3303 -10 328 134 119 15 chr3 13141732 13141799 -204895359 - MLT1B LTR MaLR 0 390 317 1137 125 11 11 chr3 13141806 13141982 -204895176 - AluY SINE Alu 0 311 136 527 91 91 11 chr3 13141982 13142070 -204895088 - MLT1B LTR MaLR -58 332 238 920 141 0 15 chr3 13142333 13142468 -204894690 + FLAM_A SINE Alu 1 133 0 408 71 0 0 chr3 13142616 13142672 -204894486 + (TC)n Simple_repeat Simple_repeat 1 56 0 801 165 0 0 chr3 13142865 13142986 -204894172 + FLAM_C SINE Alu 1 121 -22 2410 60 0 10 chr3 13142996 13143294 -204893864 + AluY SINE Alu 1 295 -16 974 186 11 11 chr3 13143924 13144112 -204893046 + L1PB4 LINE L1 5949 6136 -20 997 116 0 0 chr3 13144119 13144257 -204892901 - AluSg/x SINE Alu -10 300 163 2020 133 3 3 chr3 13144451 13144744 -204892414 - AluSc SINE Alu -12 297 5 21 36 0 0 chr3 13144838 13144866 -204892292 + AT_rich Low_complexity Low_complexity 1 28 0 182 136 23 0 chr3 13146588 13146632 -204890526 + (TG)n Simple_repeat Simple_repeat 1 45 0 22 35 0 0 chr3 13148826 13148855 -204888303 + AT_rich Low_complexity Low_complexity 1 29 0 373 299 85 24 chr3 13149238 13149402 -204887756 - MIR SINE MIR -33 229 56 1494 196 14 4 chr3 13149427 13149703 -204887455 - AluJb SINE Alu -33 279 1 331 235 71 10 chr3 13150276 13150374 -204886784 + MIR3 SINE MIR 105 208 0 225 0 0 0 chr3 13150617 13150642 -204886516 + (T)n Simple_repeat Simple_repeat 1 25 0 2353 92 0 10 chr3 13152294 13152608 -204884550 + AluSq SINE Alu 1 311 -2 300 53 0 0 chr3 13153110 13153148 -204884010 + (T)n Simple_repeat Simple_repeat 1 38 0 1592 73 0 10 chr3 13153159 13153364 -204883794 - AluSq SINE Alu -110 203 1 366 279 137 37 chr3 13154097 13154151 -204883007 + MIR SINE MIR 54 101 -161 2252 95 10 13 chr3 13154151 13154456 -204882702 + AluSx SINE Alu 1 304 -8 366 279 137 37 chr3 13154456 13154591 -204882567 + MIR SINE MIR 101 262 0 2304 106 0 10 chr3 13154651 13154954 -204882204 + AluSc SINE Alu 1 300 -9 180 176 0 0 chr3 13154965 13154999 -204882159 + GA-rich Low_complexity Low_complexity 3 36 0 2276 91 3 0 chr3 13155165 13155451 -204881707 + AluY SINE Alu 1 287 -24 21 36 0 0 chr3 13155451 13155479 -204881679 + AT_rich Low_complexity Low_complexity 1 28 0 26 64 0 0 chr3 13155507 13155554 -204881604 + AT_rich Low_complexity Low_complexity 1 47 0 23 54 0 0 chr3 13155873 13155910 -204881248 + AT_rich Low_complexity Low_complexity 1 37 0 715 211 8 8 chr3 13156100 13156223 -204880935 + FLAM_A SINE Alu 1 123 -10 22 0 0 0 chr3 13156262 13156284 -204880874 + AT_rich Low_complexity Low_complexity 1 22 0 1489 181 38 14 chr3 13156292 13156585 -204880573 + AluJo SINE Alu 1 300 -12 268 274 32 65 chr3 13156701 13156825 -204880333 + L1ME LINE L1 5572 5691 -430 2383 108 12 0 chr3 13156825 13157149 -204880009 - HSMAR1 DNA Mariner -2 1285 958 372 61 16 55 chr3 13157447 13157693 -204879465 + AluY SINE Alu 1 300 0 25 31 0 0 chr3 13158799 13158831 -204878327 + AT_rich Low_complexity Low_complexity 1 32 0 238 267 322 0 chr3 13159573 13159663 -204877495 + L2 LINE L2 3151 3269 -3 2555 68 0 0 chr3 13160264 13160571 -204876587 + AluY SINE Alu 1 307 -4 941 102 71 0 chr3 13160584 13160711 -204876447 + AluSq/x SINE Alu 1 136 -177 328 307 51 22 chr3 13160751 13160888 -204876270 + MIR SINE MIR 109 249 -13 1770 171 9 19 chr3 13160965 13161280 -204875878 - AluSx SINE Alu 0 312 1 1924 139 0 0 chr3 13161812 13162111 -204875047 + AluSx SINE Alu 9 307 0 2642 55 0 0 chr3 13163965 13164273 -204872885 + AluY SINE Alu 1 308 -3 188 33 0 33 chr3 13164377 13164407 -204872751 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1743 179 7 14 chr3 13164701 13164991 -204872167 + AluJo SINE Alu 1 288 -24 989 169 35 0 chr3 13165011 13165183 -204871975 + AluYb8 SINE Alu 136 313 -5 242 29 29 0 chr3 13166746 13166781 -204870377 + (TG)n Simple_repeat Simple_repeat 2 37 0 202 247 96 41 chr3 13169064 13169137 -204868021 - L2 LINE L2 -8 3264 3188 703 219 124 0 chr3 13169148 13169326 -204867832 - MIR SINE MIR -15 247 48 299 227 61 0 chr3 13169728 13169794 -204867364 + MER20B DNA MER1_type 96 165 -618 280 393 56 0 chr3 13170193 13170282 -204866876 - L2 LINE L2 -37 3235 3142 267 120 53 27 chr3 13170643 13170718 -204866440 + CT-rich Low_complexity Low_complexity 6 82 0 30 0 0 0 chr3 13174407 13174437 -204862721 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr3 13175638 13175660 -204861498 + (T)n Simple_repeat Simple_repeat 1 22 0 1845 127 53 0 chr3 13176721 13177004 -204860154 - MER7A DNA MER2_type -48 298 3 304 306 57 49 chr3 13177032 13177101 -204860057 + HAL1b LINE L1 383 450 -898 2179 106 3 0 chr3 13177101 13177394 -204859764 + AluSg SINE Alu 1 294 -16 304 306 57 49 chr3 13177394 13177569 -204859589 + HAL1b LINE L1 450 629 -719 2193 105 3 10 chr3 13177570 13177876 -204859282 + AluSg1 SINE Alu 1 304 -5 188 33 0 33 chr3 13177981 13178011 -204859147 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1743 179 7 14 chr3 13178305 13178595 -204858563 + AluJo SINE Alu 1 288 -24 989 169 35 0 chr3 13178615 13178787 -204858371 + AluYb8 SINE Alu 136 313 -5 242 29 29 0 chr3 13180351 13180386 -204856772 + (TG)n Simple_repeat Simple_repeat 2 37 0 202 247 96 41 chr3 13182669 13182742 -204854416 - L2 LINE L2 -8 3264 3188 703 219 124 0 chr3 13182753 13182931 -204854227 - MIR SINE MIR -15 247 48 299 227 61 0 chr3 13183333 13183399 -204853759 + MER20B DNA MER1_type 96 165 -618 280 393 56 0 chr3 13183798 13183887 -204853271 - L2 LINE L2 -37 3235 3142 267 120 53 27 chr3 13184247 13184322 -204852836 + CT-rich Low_complexity Low_complexity 6 82 0 30 0 0 0 chr3 13188012 13188042 -204849116 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr3 13189244 13189266 -204847892 + (T)n Simple_repeat Simple_repeat 1 22 0 705 291 110 63 chr3 13189954 13190415 -204846743 - L2 LINE L2 -2 3311 2796 1168 153 65 92 chr3 13190415 13190510 -204846648 - MER58A DNA MER1_type -2196 224 128 2184 119 17 0 chr3 13190510 13190812 -204846346 + AluSx SINE Alu 1 307 -5 1168 153 65 92 chr3 13190812 13190945 -204846213 - MER58A DNA MER1_type -2292 128 2 705 291 110 63 chr3 13190945 13191268 -204845890 - L2 LINE L2 -517 2796 2489 2320 92 0 0 chr3 13191393 13191688 -204845470 + AluSg SINE Alu 1 295 -15 269 326 92 0 chr3 13191996 13192094 -204845064 - L2 LINE L2 -9 3263 3157 1044 121 221 11 chr3 13192160 13192350 -204844808 + MER30 DNA MER1_type 1 230 0 1322 146 219 12 chr3 13192866 13193112 -204844046 - AluJo SINE Alu -5 297 1 2293 36 88 0 chr3 13193497 13193771 -204843387 + AluY SINE Alu 1 298 -13 2060 117 3 52 chr3 13194432 13194740 -204842418 + AluSx SINE Alu 1 293 -19 1281 224 116 28 chr3 13194766 13195154 -204842004 + L1MC2 LINE L1 3957 4378 -1768 1046 165 0 0 chr3 13195154 13195312 -204841846 + FRAM SINE Alu 1 157 -19 2221 99 0 0 chr3 13195340 13195675 -204841483 + AluSx SINE Alu 1 335 0 2820 200 101 14 chr3 13195698 13195939 -204841219 + L1MC2 LINE L1 4404 4623 -1721 1918 166 7 0 chr3 13195939 13196235 -204840923 - AluSx SINE Alu -14 298 1 2820 200 101 14 chr3 13196235 13196471 -204840687 + L1MC2 LINE L1 4623 4837 -1507 351 0 0 0 chr3 13196471 13196510 -204840648 + (TG)n Simple_repeat Simple_repeat 2 40 0 2820 200 101 14 chr3 13196510 13197343 -204839815 + L1MC2 LINE L1 4837 5831 -513 1236 240 124 20 chr3 13197345 13197836 -204839322 + L1M1 LINE L1 3100 3641 -3924 718 112 37 67 chr3 13197852 13197986 -204839172 + L1M2 LINE L1 5665 5794 -518 508 91 0 80 chr3 13197986 13198074 -204839084 + L1MA9 LINE L1 5383 5463 -849 2454 154 47 55 chr3 13198164 13198524 -204838634 + L1MA9 LINE L1 5782 6138 -174 1925 149 3 13 chr3 13198524 13198826 -204838332 + AluJb SINE Alu 1 299 -13 2454 154 47 55 chr3 13198826 13198997 -204838161 + L1MA9 LINE L1 6138 6309 -3 3182 111 21 38 chr3 13199005 13199499 -204837659 + L1MC1 LINE L1 5818 6304 -29 2141 102 10 33 chr3 13199499 13199802 -204837356 + AluSx SINE Alu 5 300 -12 3182 111 21 38 chr3 13199802 13199829 -204837329 + L1MC1 LINE L1 6304 6330 -3 587 137 23 122 chr3 13199829 13199910 -204837248 + AluJo/FLAM SINE Alu 1 66 -236 2266 85 0 13 chr3 13199910 13200215 -204836943 - AluY SINE Alu -10 301 1 587 137 23 122 chr3 13200215 13200264 -204836894 + AluJo/FLAM SINE Alu 66 118 -184 24 0 0 0 chr3 13200264 13200288 -204836870 + AT_rich Low_complexity Low_complexity 1 24 0 629 318 92 25 chr3 13200290 13200425 -204836733 + HAL1b LINE L1 64 188 -1160 1634 166 17 10 chr3 13200425 13200720 -204836438 + AluSx SINE Alu 1 297 -15 629 318 92 25 chr3 13200720 13200867 -204836291 + HAL1b LINE L1 188 365 -983 1923 153 48 0 chr3 13200902 13201215 -204835943 - MER7A DNA MER2_type -18 328 3 274 306 57 49 chr3 13201243 13201312 -204835846 + HAL1b LINE L1 383 450 -898 2071 106 3 0 chr3 13201312 13201605 -204835553 + AluSg SINE Alu 1 294 -16 274 306 57 49 chr3 13201605 13201780 -204835378 + HAL1b LINE L1 450 629 -719 2241 92 3 0 chr3 13201781 13202087 -204835071 + AluSg1 SINE Alu 1 307 -2 1776 223 32 73 chr3 13202503 13203159 -204833999 + L1MC5 LINE L1 6732 7360 -601 1023 256 61 59 chr3 13203296 13203819 -204833339 + L1MC5 LINE L1 6962 7485 -476 475 135 292 0 chr3 13203863 13203959 -204833199 + FLAM_A SINE Alu 6 129 -13 1798 153 7 0 chr3 13203962 13204263 -204832895 + AluSx SINE Alu 1 303 -9 260 256 81 23 chr3 13204582 13204668 -204832490 + L2 LINE L2 3223 3313 0 191 336 130 40 chr3 13205014 13205223 -204831935 + L2 LINE L2 332 573 -2741 2086 116 17 0 chr3 13205223 13205525 -204831633 - AluSx SINE Alu -5 307 1 191 336 130 40 chr3 13205525 13205592 -204831566 + L2 LINE L2 573 633 -2681 839 327 151 42 chr3 13205983 13206035 -204831123 + L2 LINE L2 1301 1346 -1926 2173 88 13 28 chr3 13206035 13206352 -204830806 - AluSx SINE Alu 0 312 1 839 327 151 42 chr3 13206352 13207507 -204829651 + L2 LINE L2 1346 2374 -898 2355 147 18 61 chr3 13207507 13207892 -204829266 + MSTB LTR MaLR 1 401 -25 1783 142 17 26 chr3 13207892 13208029 -204829129 + AluJo SINE Alu 1 138 -174 2238 93 0 0 chr3 13208029 13208319 -204828839 + AluSc SINE Alu 1 290 -19 1783 142 17 26 chr3 13208319 13208483 -204828675 + AluJo SINE Alu 138 299 -13 2118 122 0 0 chr3 13208490 13208793 -204828365 + AluSx SINE Alu 1 303 -9 2355 147 18 61 chr3 13208793 13208842 -204828316 + MSTB LTR MaLR 407 424 -2 839 327 151 42 chr3 13208842 13209392 -204827766 + L2 LINE L2 2374 3266 -6 238 325 61 18 chr3 13209428 13209591 -204827567 - MIR SINE MIR -16 246 77 620 195 81 109 chr3 13209661 13209720 -204827438 + MLT1J LTR MaLR 5 64 -447 2203 104 0 0 chr3 13209720 13210019 -204827139 - AluSx SINE Alu -13 299 1 620 195 81 109 chr3 13210019 13210396 -204826762 + MLT1J LTR MaLR 64 500 -11 203 333 0 53 chr3 13211923 13212073 -204825085 + C-rich Low_complexity Low_complexity 3 144 0 225 297 0 25 chr3 13212099 13212217 -204824941 + CT-rich Low_complexity Low_complexity 2 116 0 206 292 0 66 chr3 13212175 13212312 -204824846 + C-rich Low_complexity Low_complexity 2 129 0 * 350 113 0 42 chr3 13213034 13213105 -204824053 + (CA)n Simple_repeat Simple_repeat 2 69 0 237 65 0 0 chr3 13214408 13214439 -204822719 + (GA)n Simple_repeat Simple_repeat 2 32 0 2159 107 0 3 chr3 13214513 13214811 -204822347 + AluSq SINE Alu 1 297 -16 551 265 55 45 chr3 13214830 13215030 -204822128 + MIR SINE MIR 40 241 -21 664 155 43 17 chr3 13215100 13215216 -204821942 - FLAM_A SINE Alu -12 130 12 329 261 109 0 chr3 13215645 13215737 -204821421 + MIR SINE MIR 11 112 -150 1999 116 0 0 chr3 13215838 13216113 -204821045 + AluJo SINE Alu 2 276 -36 1892 137 0 23 chr3 13216182 13216489 -204820669 + AluSx SINE Alu 1 300 -12 2347 71 0 0 chr3 13216637 13216932 -204820226 + AluY SINE Alu 1 295 -16 387 297 139 46 chr3 13216965 13217332 -204819826 - L1ME3 LINE L1 -205 5957 5557 1904 136 3 37 chr3 13217350 13217537 -204819621 - AluJb SINE Alu 0 312 139 1966 64 114 4 chr3 13217537 13217817 -204819341 - AluY SINE Alu 0 311 1 1904 136 3 37 chr3 13217817 13217952 -204819206 - AluJb SINE Alu -173 139 1 210 292 0 0 chr3 13218434 13218482 -204818676 + polypurine Low_complexity Low_complexity 4 51 0 2045 116 3 0 chr3 13218680 13218973 -204818185 - AluSx SINE Alu -18 294 1 513 271 114 33 chr3 13219085 13219295 -204817863 + MIR SINE MIR 17 243 -19 233 336 115 9 chr3 13219278 13219369 -204817789 - L2 LINE L2 -7 3265 3163 735 229 91 13 chr3 13219369 13219614 -204817544 + MIR SINE MIR 1 261 -1 242 305 12 0 chr3 13220501 13220583 -204816575 - L2 LINE L2 -339 2974 2892 329 292 152 6 chr3 13220591 13220769 -204816389 - L2 LINE L2 -1035 2279 2076 297 306 10 0 chr3 13221256 13221354 -204815804 + CT-rich Low_complexity Low_complexity 2 100 0 210 360 0 0 chr3 13221448 13221523 -204815635 + CT-rich Low_complexity Low_complexity 2 76 0 282 278 139 50 chr3 13221525 13221705 -204815453 - L2 LINE L2 -1 3312 3117 180 229 83 21 chr3 13221960 13222008 -204815150 - MIR SINE MIR -95 167 117 605 253 104 20 chr3 13222104 13222265 -204814893 - MER20 DNA MER1_type 0 219 36 1537 174 53 7 chr3 13222265 13222546 -204814612 + AluJb SINE Alu 5 298 -4 605 253 104 20 chr3 13222546 13222586 -204814572 - MER20 DNA MER1_type -183 36 1 2162 95 0 0 chr3 13222749 13223075 -204814083 + AluSx SINE Alu 1 326 0 642 261 19 66 chr3 13223082 13223163 -204813995 - MIR SINE MIR -19 243 160 2202 95 0 0 chr3 13223163 13223458 -204813700 + AluY SINE Alu 1 295 -16 642 261 19 66 chr3 13223458 13223587 -204813571 - MIR SINE MIR -102 160 43 1392 203 44 3 chr3 13223590 13223911 -204813247 + MER113 DNA MER1_type? 79 412 -109 2262 64 7 0 chr3 13224028 13224323 -204812835 - AluY SINE Alu -14 297 1 382 283 9 53 chr3 13224329 13224442 -204812716 + MIR SINE MIR 85 192 -70 1001 251 55 98 chr3 13224613 13225035 -204812123 + MLT1J LTR MaLR 3 406 -105 2271 49 0 7 chr3 13225035 13225353 -204811805 - AluY SINE Alu 0 316 1 1001 251 55 98 chr3 13225353 13225387 -204811771 + MLT1J LTR MaLR 406 440 -71 210 71 0 0 chr3 13225393 13225421 -204811737 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1513 169 18 15 chr3 13225451 13225724 -204811434 - AluJo SINE Alu -38 274 1 294 172 0 17 chr3 13225732 13225790 -204811368 + MLT1J LTR MaLR 450 506 -5 182 200 0 0 chr3 13225849 13225884 -204811274 + MIR SINE MIR 79 113 -95 667 134 84 25 chr3 13226259 13226378 -204810780 + AluJo SINE Alu 9 134 -178 6539 168 30 33 chr3 13226425 13227464 -204809694 - L1MC1 LINE L1 0 6613 5572 1978 137 7 0 chr3 13227464 13227763 -204809395 - AluSx SINE Alu -11 301 1 6539 168 30 33 chr3 13227763 13227812 -204809346 - L1MC1 LINE L1 -1041 5572 5524 1919 133 20 0 chr3 13227812 13228106 -204809052 - AluSx SINE Alu -12 300 1 6539 168 30 33 chr3 13228106 13228564 -204808594 - L1MC1 LINE L1 -1089 5524 5066 2166 106 0 10 chr3 13228564 13228865 -204808293 - AluSx SINE Alu -14 298 1 1957 110 23 7 chr3 13228873 13229172 -204807986 - AluSq SINE Alu -9 304 1 6539 168 30 33 chr3 13229172 13229594 -204807564 - L1MC1 LINE L1 -1554 5059 4638 941 168 84 5 chr3 13229596 13229798 -204807360 + AluJo SINE Alu 85 302 -10 4280 231 32 19 chr3 13229803 13230839 -204806319 - L1MC1 LINE L1 -1793 4633 3612 1901 115 39 39 chr3 13230839 13231013 -204806145 - AluSx SINE Alu 0 312 139 267 31 0 0 chr3 13231013 13231045 -204806113 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1945 112 0 7 chr3 13231045 13231330 -204805828 - AluSq SINE Alu -30 283 1 1901 115 39 39 chr3 13231330 13231466 -204805692 - AluSx SINE Alu -171 141 1 4280 231 32 19 chr3 13231466 13231649 -204805509 - L1MC1 LINE L1 -2814 3612 3398 1254 196 32 4 chr3 13231651 13231901 -204805257 - AluJo SINE Alu -12 300 44 876 123 15 8 chr3 13231910 13232040 -204805118 - AluJb SINE Alu -171 141 11 915 202 0 0 chr3 13232047 13232265 -204804893 - L1MC1 LINE L1 -3006 3420 3203 554 225 0 39 chr3 13232269 13232398 -204804760 + FLAM_C SINE Alu 7 130 -13 180 0 0 0 chr3 13232433 13232453 -204804705 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1855 128 29 4 chr3 13232455 13232736 -204804422 - AluSg SINE Alu -22 288 1 1875 249 58 3 chr3 13232741 13233308 -204803850 - L1MC1 LINE L1 -3234 3192 2595 994 162 23 0 chr3 13233310 13233483 -204803675 - AluJo/FRAM SINE Alu -2 310 134 2145 103 3 10 chr3 13233483 13233794 -204803364 - AluY SINE Alu -2 309 1 1617 150 80 12 chr3 13233794 13234236 -204802922 - L1MC1 LINE L1 -3947 2479 2140 356 200 16 49 chr3 13234301 13234486 -204802672 + C-rich Low_complexity Low_complexity 2 180 0 388 257 9 18 chr3 13234486 13234599 -204802559 + CT-rich Low_complexity Low_complexity 1 112 0 457 134 0 0 chr3 13234703 13234770 -204802388 - AluS SINE Alu -212 101 35 9064 135 39 42 chr3 13234772 13235234 -204801924 - L1MC1 LINE L1 -4493 1933 1471 192 97 0 0 chr3 13235234 13235265 -204801893 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9064 135 39 42 chr3 13235265 13236650 -204800508 - L1MC1 LINE L1 -4955 1471 1 247 222 0 0 chr3 13236821 13236866 -204800292 - MIR SINE MIR -31 231 187 2430 140 5 10 chr3 13237042 13237448 -204799710 + L1MB3 LINE L1 5779 6182 -1 1288 205 129 37 chr3 13237590 13237970 -204799188 + MLT1C LTR MaLR 1 415 -52 257 87 29 58 chr3 13238030 13238099 -204799059 + (GGAA)n Simple_repeat Simple_repeat 3 69 0 812 165 0 8 chr3 13238320 13238453 -204798705 + AluJb SINE Alu 3 134 -178 1415 189 35 3 chr3 13238469 13238754 -204798404 + AluJb SINE Alu 5 298 -14 372 22 0 0 chr3 13238837 13238882 -204798276 + (CA)n Simple_repeat Simple_repeat 2 46 0 14249 102 44 85 chr3 13238883 13239659 -204797499 - Tigger1 DNA MER2_type -1 2417 1610 2131 104 3 0 chr3 13239659 13239946 -204797212 - AluSx SINE Alu -24 288 1 722 112 0 0 chr3 13239953 13240051 -204797107 - AluSg/x SINE Alu -16 294 197 14249 102 44 85 chr3 13240051 13240064 -204797094 - Tigger1 DNA MER2_type -814 1604 1592 2289 88 0 0 chr3 13240064 13240358 -204796800 - AluSg SINE Alu -16 294 1 14249 102 44 85 chr3 13240358 13240657 -204796501 - Tigger1 DNA MER2_type -826 1592 1282 2058 121 3 0 chr3 13240657 13240962 -204796196 - AluSg1 SINE Alu -3 306 1 14249 102 44 85 chr3 13240962 13241797 -204795361 - Tigger1 DNA MER2_type -1136 1282 509 840 150 0 15 chr3 13241797 13241930 -204795228 - FLAM_C SINE Alu -2 131 1 14249 102 44 85 chr3 13241930 13242419 -204794739 - Tigger1 DNA MER2_type -1909 509 1 200 182 0 0 chr3 13242499 13242532 -204794626 + GA-rich Low_complexity Low_complexity 3 35 0 1521 138 20 30 chr3 13242553 13242858 -204794300 + AluSx SINE Alu 1 302 -10 2218 169 51 5 chr3 13243290 13243699 -204793459 - MSTA LTR MaLR 0 428 1 1058 232 0 36 chr3 13243795 13244045 -204793113 + L1M3e LINE L1 1 241 -6789 1345 104 22 6 chr3 13444520 13444703 -204592455 + AluSg/x SINE Alu 117 302 -10 292 321 10 14 chr3 13444705 13444995 -204592163 + AluYa5 SINE Alu 3 291 -10 1343 223 144 70 chr3 13445712 13446358 -204590800 + L1MC5 LINE L1 6837 7530 -431 321 287 46 40 chr3 13446441 13446615 -204590543 + L1ME3A LINE L1 5987 6161 -9 209 262 19 37 chr3 13446619 13446726 -204590432 + (TATG)n Simple_repeat Simple_repeat 4 108 0 * 222 298 12 12 chr3 13446646 13446730 -204590428 + (TCTG)n Simple_repeat Simple_repeat 4 87 0 241 230 50 40 chr3 13447369 13447469 -204589689 + MIR SINE MIR 101 201 -61 3166 156 70 15 chr3 13447511 13448166 -204588992 + L1MB5 LINE L1 5475 6165 -9 330 237 0 41 chr3 13448170 13448281 -204588877 - L1MC4 LINE L1 -1339 6983 1996 224 218 55 0 chr3 13448300 13448355 -204588803 + L2 LINE L2 3186 3243 -29 294 279 19 19 chr3 13448387 13448491 -204588667 - MIR3 SINE MIR -22 186 83 362 196 0 72 chr3 13448520 13448617 -204588541 - MIR SINE MIR -70 192 103 1549 271 175 17 chr3 13448795 13449700 -204587458 + L2 LINE L2 2196 3245 -68 448 307 39 20 chr3 13449947 13450100 -204587058 - MIR SINE MIR -99 163 8 2251 71 0 14 chr3 13452213 13452493 -204584665 + AluY SINE Alu 1 276 -35 225 0 0 0 chr3 13452496 13452521 -204584637 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 451 243 125 7 chr3 13452600 13452736 -204584422 + MIR SINE MIR 89 240 -22 2350 90 0 3 chr3 13452938 13453238 -204583920 + AluSg1 SINE Alu 1 299 -10 476 242 202 40 chr3 13455127 13455375 -204581783 + L2 LINE L2 3025 3312 -1 2342 64 0 58 chr3 13455375 13455688 -204581470 - AluY SINE Alu -16 295 1 562 222 49 69 chr3 13455770 13455973 -204581185 - MIR SINE MIR 0 262 64 2265 109 0 26 chr3 13456767 13457071 -204580087 - AluSx SINE Alu -16 296 1 196 286 0 32 chr3 13457071 13457134 -204580024 - L2 LINE L2 -7 3265 3205 2337 116 0 0 chr3 13457149 13457450 -204579708 - AluSg SINE Alu -7 303 3 304 268 0 0 chr3 13457463 13457534 -204579624 - L2 LINE L2 -1 3271 3201 299 271 0 0 chr3 13457537 13457607 -204579551 - L2 LINE L2 0 3272 3203 248 257 0 43 chr3 13457611 13457681 -204579477 - L2 LINE L2 0 3272 3206 2467 91 3 0 chr3 13457809 13458117 -204579041 + AluSc SINE Alu 1 309 0 21 0 0 0 chr3 13458239 13458260 -204578898 + AT_rich Low_complexity Low_complexity 1 21 0 185 244 22 0 chr3 13458267 13458312 -204578846 - L2 LINE L2 0 3313 3268 1041 166 16 21 chr3 13458383 13458397 -204578761 + AluJb SINE Alu 120 133 -179 2410 101 7 0 chr3 13458397 13458704 -204578454 + AluSg SINE Alu 1 309 -1 1041 166 16 21 chr3 13458704 13458882 -204578276 + AluJb SINE Alu 133 311 -1 2336 103 0 0 chr3 13459312 13459612 -204577546 + AluY SINE Alu 1 300 -11 1823 158 3 14 chr3 13459629 13459921 -204577237 + AluJo SINE Alu 8 296 -16 774 185 51 6 chr3 13459973 13460130 -204577028 - MIR SINE MIR -78 184 21 2168 113 10 3 chr3 13461166 13461458 -204575700 - AluSx SINE Alu -18 294 1 2524 58 0 7 chr3 13461525 13461833 -204575325 - AluY SINE Alu -5 306 1 670 272 154 59 chr3 13461834 13462224 -204574934 + L2 LINE L2 2887 3313 0 259 211 0 0 chr3 13462419 13462471 -204574687 + L1ME3 LINE L1 6046 6097 -65 2366 99 7 0 chr3 13462476 13462778 -204574380 + AluSg SINE Alu 1 304 -6 2598 59 0 3 chr3 13462803 13463107 -204574051 + AluY SINE Alu 1 303 -8 1908 169 0 0 chr3 13463240 13463554 -204573604 - AluJb SINE Alu 0 314 1 228 67 0 0 chr3 13463609 13463639 -204573519 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 325 244 74 25 chr3 13464876 13464997 -204572161 + MIR SINE MIR 103 228 -34 * 353 260 39 10 chr3 13464960 13465064 -204572094 - MIR SINE MIR -3 259 153 2445 68 0 7 chr3 13465064 13465359 -204571799 - AluY SINE Alu -18 293 1 683 209 52 119 chr3 13465381 13465564 -204571594 + L1ME LINE L1 5289 5440 -722 599 179 0 0 chr3 13465564 13465670 -204571488 + U6 snRNA snRNA 2 107 0 683 209 52 119 chr3 13465670 13465830 -204571328 + L1ME LINE L1 5440 5609 -553 299 208 28 14 chr3 13465830 13465902 -204571256 - MIR SINE MIR -98 164 92 390 231 46 9 chr3 13465921 13466029 -204571129 + MIR SINE MIR 148 259 -3 402 145 14 0 chr3 13469204 13469273 -204567885 - AluJ/FLAM SINE Alu -241 71 2 1215 111 0 115 chr3 13469445 13469495 -204567663 + L1PB1 LINE L1 5926 5980 -171 2280 114 0 0 chr3 13469495 13469794 -204567364 + AluSq SINE Alu 1 299 -14 2159 91 3 14 chr3 13469804 13470113 -204567045 + AluSx SINE Alu 1 306 0 1215 111 0 115 chr3 13470113 13470303 -204566855 + L1PB1 LINE L1 5990 6149 -2 1657 184 0 20 chr3 13470380 13470673 -204566485 - AluJo SINE Alu -25 287 1 212 320 40 0 chr3 13470938 13471013 -204566145 - MIR SINE MIR -64 144 67 452 233 0 0 chr3 13471582 13471668 -204565490 - L2 LINE L2 -33 3239 3154 1021 78 39 0 chr3 13471826 13471954 -204565204 - AluSq/x SINE Alu -180 133 1 2584 60 0 3 chr3 13471965 13472267 -204564891 - AluY SINE Alu -10 301 1 182 315 11 22 chr3 13472268 13472357 -204564801 - L2 LINE L2 -236 3036 2949 302 368 159 7 chr3 13472463 13472765 -204564393 + L2 LINE L2 2924 3271 -1 349 217 26 11 chr3 13472797 13472953 -204564205 - MIR SINE MIR -37 225 3 572 271 101 0 chr3 13473918 13474106 -204563052 + MIR SINE MIR 38 244 -18 195 42 0 0 chr3 13474433 13474457 -204562701 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 278 275 99 15 chr3 13474500 13474631 -204562527 + L2 LINE L2 3160 3301 -12 1829 123 0 112 chr3 13474634 13474974 -204562184 + AluJo SINE Alu 1 302 -10 21 36 0 0 chr3 13475195 13475223 -204561935 + AT_rich Low_complexity Low_complexity 1 28 0 894 143 8 0 chr3 13475298 13475424 -204561734 - FLAM_C SINE Alu -16 127 1 298 115 0 0 chr3 13475636 13475688 -204561470 - Alu SINE Alu -2 300 249 448 114 0 0 chr3 13475970 13476040 -204561118 - L1MB7 LINE L1 -52 6132 6063 518 159 7 80 chr3 13476646 13476662 -204560496 - LTR37A LTR ERV1 -52 374 358 1924 149 45 0 chr3 13476662 13476951 -204560207 + AluSx SINE Alu 1 302 -10 518 159 7 80 chr3 13476951 13477072 -204560086 - LTR37A LTR ERV1 -68 358 247 620 154 19 0 chr3 13477074 13477178 -204559980 + FLAM_C SINE Alu 2 107 -36 415 88 0 0 chr3 13477215 13477272 -204559886 + FLAM_A SINE Alu 50 106 -36 434 155 10 0 chr3 13477279 13477376 -204559782 + (CA)n Simple_repeat Simple_repeat 2 99 0 846 196 162 25 chr3 13477376 13477580 -204559578 + AluJo SINE Alu 76 307 -5 197 342 51 0 chr3 13477838 13477917 -204559241 - MIR SINE MIR -116 146 64 267 284 62 0 chr3 13477959 13478040 -204559118 - L2 LINE L2 -1 3271 3186 227 235 245 10 chr3 13478045 13478143 -204559015 + L2 LINE L2 3192 3312 -1 2161 122 0 3 chr3 13478487 13478782 -204558376 + AluSx SINE Alu 1 294 -18 1313 192 59 59 chr3 13478889 13479221 -204557937 - L1MB4 LINE L1 0 6180 5849 1975 96 78 14 chr3 13479221 13479503 -204557655 - AluSg1 SINE Alu -9 300 1 2647 65 0 0 chr3 13479513 13479822 -204557336 - AluSc SINE Alu 0 309 1 1313 192 59 59 chr3 13479822 13479853 -204557305 - L1MB4 LINE L1 -339 5841 5806 1423 180 103 4 chr3 13480172 13480444 -204556714 - AluJo SINE Alu -13 299 1 307 284 149 14 chr3 13480544 13480692 -204556466 - MIR SINE MIR -73 189 22 2114 111 27 10 chr3 13481132 13481429 -204555729 - AluSx SINE Alu -10 302 1 2250 138 0 0 chr3 13481462 13481774 -204555384 - AluSx SINE Alu 0 312 1 605 191 0 30 chr3 13482543 13482674 -204554484 + FLAM_A SINE Alu 1 127 -6 1295 31 0 0 chr3 13482679 13482842 -204554316 + L1PA2 LINE L1 5993 6155 0 2328 52 41 17 chr3 13482854 13483144 -204554014 + AluY SINE Alu 1 297 -14 2177 135 3 3 chr3 13483540 13483852 -204553306 + AluSx SINE Alu 1 312 0 2350 113 0 0 chr3 13484760 13485062 -204552096 - AluSq SINE Alu -11 302 1 1806 132 33 59 chr3 13485075 13485378 -204551780 - AluSx SINE Alu -17 295 1 387 233 86 55 chr3 13485415 13485598 -204551560 - L1ME1 LINE L1 -2 6164 5905 26 74 0 0 chr3 13485600 13485654 -204551504 + AT_rich Low_complexity Low_complexity 1 54 0 231 36 0 0 chr3 13485694 13485722 -204551436 + (TG)n Simple_repeat Simple_repeat 1 28 0 2568 63 0 0 chr3 13485880 13486181 -204550977 + AluSg SINE Alu 1 301 -9 2285 127 0 3 chr3 13486708 13487016 -204550142 + AluSx SINE Alu 1 307 -5 2456 65 3 19 chr3 13487139 13487449 -204549709 + AluSp SINE Alu 1 305 -8 358 313 27 34 chr3 13487732 13487879 -204549279 - MIR SINE MIR -19 243 98 2097 116 0 41 chr3 13487921 13488240 -204548918 - AluSq SINE Alu -7 306 1 2382 74 0 17 chr3 13488416 13488715 -204548443 + AluSp SINE Alu 1 294 -19 1986 144 13 7 chr3 13489045 13489344 -204547814 - AluJb SINE Alu -11 301 1 2021 122 17 7 chr3 13489384 13489671 -204547487 + AluSx SINE Alu 1 290 -22 2294 112 0 3 chr3 13489828 13490132 -204547026 + AluSq SINE Alu 1 303 -10 180 111 0 0 chr3 13490132 13490159 -204546999 + (GGGA)n Simple_repeat Simple_repeat 1 27 0 1814 114 28 48 chr3 13490241 13490530 -204546628 + AluJb SINE Alu 1 283 -29 2524 71 0 7 chr3 13490530 13490838 -204546320 + AluSx SINE Alu 1 306 -6 910 112 15 175 chr3 13491599 13491805 -204545353 + AluJb SINE Alu 130 302 -10 207 0 0 0 chr3 13492137 13492160 -204544998 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 842 164 0 0 chr3 13492160 13492282 -204544876 - AluJb SINE Alu -190 122 1 2145 107 3 17 chr3 13492497 13492795 -204544363 - AluSx SINE Alu -16 296 3 2131 109 3 7 chr3 13492807 13493101 -204544057 - AluSg SINE Alu -17 293 1 1811 173 10 7 chr3 13493162 13493457 -204543701 + AluJb SINE Alu 10 305 -7 1888 148 7 7 chr3 13493697 13493995 -204543163 - AluSx SINE Alu -14 298 1 2672 58 3 0 chr3 13494005 13494316 -204542842 - AluSx SINE Alu 0 312 1 1423 180 103 4 chr3 13494666 13494938 -204542220 - AluJo SINE Alu -13 299 1 335 284 149 14 chr3 13495038 13495186 -204541972 - MIR SINE MIR -73 189 22 2106 111 27 10 chr3 13495621 13495918 -204541240 - AluSx SINE Alu -10 302 1 2239 138 0 0 chr3 13495951 13496263 -204540895 - AluSx SINE Alu 0 312 1 531 202 0 25 chr3 13497032 13497151 -204540007 + FLAM_A SINE Alu 1 116 -17 307 359 36 26 chr3 13497272 13497467 -204539691 - L1MC/D LINE L1 -2036 5772 5576 1293 169 31 63 chr3 13497581 13497835 -204539323 + AluJb SINE Alu 1 246 -66 312 86 69 0 chr3 13497902 13497985 -204539173 + AluJb SINE Alu 241 327 0 1718 149 3 57 chr3 13498001 13498317 -204538841 + AluJo SINE Alu 13 311 -1 769 291 189 19 chr3 13498531 13499013 -204538145 - L3 LINE CR1 -291 1286 723 507 277 174 0 chr3 13499642 13499837 -204537321 - MIR SINE MIR -14 248 20 1026 114 0 0 chr3 13499858 13499990 -204537168 - AluSq/x SINE Alu -180 132 1 2216 124 0 0 chr3 13500536 13500835 -204536323 - AluSx SINE Alu -13 299 1 297 243 48 95 chr3 13500885 13501095 -204536063 - HAL1 LINE L1 -72 2435 2236 480 251 52 31 chr3 13501116 13501307 -204535851 - HAL1 LINE L1 -335 2172 1978 535 284 43 34 chr3 13501371 13501723 -204535435 + L1MC5 LINE L1 7428 7782 -179 2406 91 0 0 chr3 13501785 13502082 -204535076 + AluSx SINE Alu 1 297 -15 1721 176 20 16 chr3 13502106 13502412 -204534746 - AluJb SINE Alu -5 307 1 1849 160 14 10 chr3 13502414 13502708 -204534450 - AluJo SINE Alu -17 295 1 708 156 117 7 chr3 13502708 13502862 -204534296 - L1MB8 LINE L1 -347 5831 5661 1078 110 0 61 chr3 13502864 13503097 -204534061 - AluSc SINE Alu 0 309 4 2221 108 3 13 chr3 13503110 13503415 -204533743 - AluSx SINE Alu -10 302 1 2280 113 0 0 chr3 13503425 13503725 -204533433 - AluSq SINE Alu -13 300 1 291 102 0 20 chr3 13503726 13503775 -204533383 - L1PB2 LINE L1 -178 5973 5926 2312 92 3 3 chr3 13503946 13504238 -204532920 + AluSx SINE Alu 1 292 -20 2358 75 0 0 chr3 13504548 13504872 -204532286 + AluY SINE Alu 1 324 0 952 171 0 6 chr3 13504899 13505057 -204532101 - FRAM SINE Alu -9 157 1 1052 157 48 56 chr3 13505061 13505216 -204531942 - L1MB8 LINE L1 -699 5481 5326 1576 229 0 3 chr3 13505216 13505521 -204531637 - AluJb SINE Alu -8 304 1 1052 157 48 56 chr3 13505521 13505702 -204531456 - L1MB8 LINE L1 -854 5326 5148 2140 133 3 0 chr3 13505702 13506002 -204531156 - AluSc SINE Alu -8 301 1 1052 157 48 56 chr3 13506002 13506045 -204531113 - L1MB8 LINE L1 -1032 5148 5106 2210 101 9 28 chr3 13506486 13506803 -204530355 - AluSx SINE Alu -1 311 1 2044 192 76 64 chr3 13507483 13507743 -204529415 - L1MB8 LINE L1 -1015 5131 4875 2388 64 0 55 chr3 13507743 13508055 -204529103 + AluY SINE Alu 1 295 -16 2044 192 76 64 chr3 13508055 13508179 -204528979 - L1MB8 LINE L1 -1271 4875 4754 2227 103 0 7 chr3 13508179 13508469 -204528689 + AluY SINE Alu 1 288 -23 2044 192 76 64 chr3 13508469 13508704 -204528454 - L1MB8 LINE L1 -1392 4754 4504 1741 183 9 25 chr3 13508704 13508741 -204528417 - AluJb SINE Alu 0 312 276 261 0 0 0 chr3 13508741 13508770 -204528388 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1741 183 9 25 chr3 13508770 13509049 -204528109 - AluJb SINE Alu -36 276 1 497 88 0 15 chr3 13510324 13510414 -204526744 - Alu SINE Alu 0 310 222 876 108 8 8 chr3 13510414 13510543 -204526615 - AluSq/x SINE Alu -183 129 1 2304 102 3 3 chr3 13510858 13511161 -204525997 + AluSx SINE Alu 1 303 -9 441 0 0 0 chr3 13511162 13511211 -204525947 + (TA)n Simple_repeat Simple_repeat 1 49 0 648 227 35 0 chr3 13511216 13511357 -204525801 + MER5A DNA MER1_type 5 150 -39 2150 104 31 0 chr3 13512021 13512308 -204524850 + AluSx SINE Alu 1 296 -16 2529 52 7 3 chr3 13512668 13512973 -204524185 - AluY SINE Alu -3 308 3 532 96 0 0 chr3 13513060 13513133 -204524025 + AluS SINE Alu 6 78 -234 643 194 0 39 chr3 13514206 13514335 -204522823 + FLAM_A SINE Alu 18 141 -1 2265 94 3 16 chr3 13514879 13515187 -204521971 - AluSg SINE Alu 0 310 7 2320 82 3 3 chr3 13515218 13515509 -204521649 - AluY SINE Alu -20 291 1 578 146 18 36 chr3 13515511 13515621 -204521537 - L1M4 LINE L1 -509 5669 5562 305 333 54 0 chr3 13515627 13515756 -204521402 - MIR3 SINE MIR -71 137 2 296 232 0 12 chr3 13515957 13516039 -204521119 - L1MB8 LINE L1 -9 6169 6089 438 322 181 43 chr3 13516041 13516310 -204520848 + L2 LINE L2 2868 3195 -77 1731 83 0 9 chr3 13516310 13516538 -204520620 - AluY SINE Alu -6 305 80 438 322 181 43 chr3 13516538 13516623 -204520535 + L2 LINE L2 3195 3267 -5 444 243 79 13 chr3 13517033 13517185 -204519973 + MLT1K LTR MaLR 419 580 -8 1316 107 122 0 chr3 13517378 13517583 -204519575 - MER30 DNA MER1_type 0 230 1 1789 79 0 0 chr3 13517857 13518072 -204519086 - AluSq SINE Alu -16 297 83 188 240 0 20 chr3 13518291 13518341 -204518817 + L2 LINE L2 2931 2979 -334 750 157 16 0 chr3 13518586 13518707 -204518451 + FLAM_C SINE Alu 1 123 -10 219 36 0 0 chr3 13519636 13519664 -204517494 + (TA)n Simple_repeat Simple_repeat 2 29 0 2245 101 0 14 chr3 13519664 13519961 -204517197 - AluSg1 SINE Alu -16 293 1 534 293 28 83 chr3 13520441 13520694 -204516464 - MIR SINE MIR -8 254 16 584 254 67 6 chr3 13521142 13521307 -204515851 + FRAM SINE Alu 1 175 -1 1629 156 0 50 chr3 13521318 13521601 -204515557 + AluJo SINE Alu 9 277 -35 486 0 0 0 chr3 13521602 13521656 -204515502 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 2697 179 74 59 chr3 13521701 13522418 -204514740 - L1MB7 LINE L1 -17 6167 5440 2425 88 0 0 chr3 13522419 13522714 -204514444 - AluSg SINE Alu -15 295 1 1884 99 3 128 chr3 13522723 13523067 -204514091 - AluSg1 SINE Alu -8 301 1 959 214 37 7 chr3 13523077 13523348 -204513810 - L1MB4 LINE L1 0 6180 5902 778 186 164 0 chr3 13523375 13523515 -204513643 - FRAM SINE Alu -19 157 1 3983 200 62 34 chr3 13523555 13524121 -204513037 - L1MB4 LINE L1 -1144 5002 4396 2292 106 0 0 chr3 13524121 13524413 -204512745 - AluSc SINE Alu -17 292 1 3983 200 62 34 chr3 13524413 13524837 -204512321 - L1MB4 LINE L1 -1750 4396 3985 1148 151 0 0 chr3 13524837 13525003 -204512155 - AluSg/x SINE Alu -11 301 136 2423 94 3 0 chr3 13525005 13525312 -204511846 - AluSp SINE Alu -5 308 1 2352 92 0 3 chr3 13525486 13525781 -204511377 - AluSc SINE Alu -15 294 1 22 35 0 0 chr3 13525822 13525851 -204511307 + AT_rich Low_complexity Low_complexity 1 29 0 405 251 131 0 chr3 13525910 13526101 -204511057 - L1ME LINE L1 -303 5818 5603 722 139 42 69 chr3 13526114 13526234 -204510924 + FLAM_C SINE Alu 2 124 -83 2289 108 7 0 chr3 13526234 13526529 -204510629 + AluSp SINE Alu 1 297 -16 2581 55 0 6 chr3 13526532 13526844 -204510314 + AluY SINE Alu 1 310 -1 722 139 42 69 chr3 13526844 13526929 -204510229 + FLAM_C SINE Alu 126 207 0 775 153 0 69 chr3 13526930 13527074 -204510084 + AluJo SINE Alu 2 135 -177 2138 122 20 3 chr3 13527076 13527379 -204509779 + AluSx SINE Alu 1 308 -4 793 135 23 23 chr3 13527446 13527579 -204509579 - FLAM_C SINE Alu 0 133 1 1571 132 115 65 chr3 13527846 13527971 -204509187 + THE1C LTR MaLR 1 118 -257 2449 93 0 0 chr3 13527971 13528273 -204508885 - AluSg1 SINE Alu -7 302 1 1571 132 115 65 chr3 13528273 13528503 -204508655 + THE1C LTR MaLR 118 374 -1 884 133 21 0 chr3 13529112 13529255 -204507903 - MER46B DNA MER2_type 0 236 91 1522 178 75 42 chr3 13529255 13529615 -204507543 - MER21A LTR ERV1 0 931 560 330 58 0 39 chr3 13529609 13529661 -204507497 - AluJo SINE Alu -8 294 245 * 896 212 41 0 chr3 13529663 13529833 -204507325 - AluJo SINE Alu -135 177 1 970 137 71 18 chr3 13529833 13530074 -204507084 - MER21B LTR ERV1 -376 487 214 976 145 7 0 chr3 13530079 13530224 -204506934 + AluJo SINE Alu 17 162 -150 328 113 65 0 chr3 13530224 13530286 -204506872 - MER21A LTR ERV1 -863 68 3 725 191 170 0 chr3 13530286 13530474 -204506684 - MER46B DNA MER2_type -141 95 1 2392 100 7 0 chr3 13530668 13530969 -204506189 - AluSq SINE Alu -10 303 1 207 0 0 0 chr3 13531357 13531380 -204505778 + (A)n Simple_repeat Simple_repeat 1 23 0 1931 126 75 10 chr3 13531523 13531680 -204505478 - AluSq SINE Alu -1 312 167 2279 91 0 10 chr3 13531680 13531987 -204505171 - AluY SINE Alu -6 305 2 1931 126 75 10 chr3 13531987 13532122 -204505036 - AluSq SINE Alu -146 167 1 354 348 59 27 chr3 13532352 13532380 -204504778 + L2 LINE L2 3120 3146 -167 2413 91 3 0 chr3 13532380 13532678 -204504480 - AluSg SINE Alu -11 299 1 354 348 59 27 chr3 13532678 13532836 -204504322 + L2 LINE L2 3146 3312 -1 552 115 73 10 chr3 13532985 13533081 -204504077 + U13 snRNA snRNA 3 104 0 2054 122 0 7 chr3 13533109 13533405 -204503753 + AluJb SINE Alu 3 296 -16 216 263 53 0 chr3 13534095 13534171 -204502987 - MIR SINE MIR -119 143 64 2595 52 0 0 chr3 13534172 13534477 -204502681 - AluSg SINE Alu -5 305 1 270 330 21 0 chr3 13534623 13534720 -204502438 - L2 LINE L2 -89 3183 3085 2007 103 10 55 chr3 13534950 13535261 -204501897 - AluSx SINE Alu -15 297 1 1955 116 0 4 chr3 13535294 13535562 -204501596 - AluSc SINE Alu -25 284 18 335 377 84 0 chr3 13535586 13535753 -204501405 - L2 LINE L2 -566 2748 2568 1511 154 17 80 chr3 13536019 13536318 -204500840 + AluJo SINE Alu 3 282 -30 1019 159 12 114 chr3 13536324 13536569 -204500589 - AluJo SINE Alu -7 305 86 801 33 16 58 chr3 13536588 13536709 -204500449 - L1PA4 LINE L1 0 6155 6040 435 62 10 82 chr3 13536731 13536789 -204500369 + L1MB3 LINE L1 6094 6144 -39 1800 123 0 12 chr3 13536789 13537042 -204500116 + AluSx SINE Alu 49 298 -14 435 62 10 82 chr3 13537042 13537080 -204500078 + L1MB3 LINE L1 6144 6183 0 2491 87 0 3 chr3 13537256 13537568 -204499590 + AluY SINE Alu 1 311 0 340 58 115 0 chr3 13537572 13537624 -204499534 - L1ME3 LINE L1 -12 6150 6093 989 204 0 4 chr3 13538357 13538588 -204498570 - AluY SINE Alu -81 230 1 1195 178 82 10 chr3 13538588 13538891 -204498267 - L1MB8 LINE L1 -211 5967 5643 228 182 0 0 chr3 13538895 13538939 -204498219 + (TA)n Simple_repeat Simple_repeat 1 44 0 665 200 0 23 chr3 13538950 13539080 -204498078 - FLAM_A SINE Alu 0 142 16 205 71 24 48 chr3 13539218 13539260 -204497898 + (TAAAAA)n Simple_repeat Simple_repeat 2 42 0 2342 101 0 3 chr3 13539317 13539623 -204497535 - AluSg SINE Alu -3 307 3 2388 105 0 0 chr3 13539625 13539929 -204497229 - AluSx SINE Alu -6 306 3 841 155 0 0 chr3 13539960 13540089 -204497069 - FLAM_C SINE Alu 0 133 5 451 278 74 11 chr3 13540089 13540265 -204496893 - MIR SINE MIR -55 207 21 271 82 0 7 chr3 13540612 13540659 -204496499 - AluYa8 SINE Alu -106 194 156 189 295 70 78 chr3 13540944 13541073 -204496085 - L2 LINE L2 -212 3060 2933 757 187 9 98 chr3 13541159 13541249 -204495909 - MER3 DNA MER1_type -8 201 105 2051 87 23 65 chr3 13541249 13541558 -204495600 + AluSq SINE Alu 2 297 -16 757 187 9 98 chr3 13541558 13541681 -204495477 - MER3 DNA MER1_type -104 105 7 495 223 192 8 chr3 13542344 13542474 -204494684 - MER5A DNA MER1_type -6 183 30 486 332 67 5 chr3 13542509 13542702 -204494456 - MIR SINE MIR -38 224 20 206 196 0 71 chr3 13542769 13542825 -204494333 - MIR SINE MIR -55 153 102 459 224 197 27 chr3 13542870 13543017 -204494141 + MER5A DNA MER1_type 18 189 0 1924 137 16 19 chr3 13543028 13543341 -204493817 - AluSx SINE Alu 0 312 1 2189 115 3 7 chr3 13543935 13544230 -204492928 - AluSx SINE Alu -18 294 1 2014 146 0 0 chr3 13544232 13544513 -204492645 - AluSx SINE Alu -31 281 1 1319 211 73 35 chr3 13544922 13545291 -204491867 - L1MC4 LINE L1 -144 7898 7516 2460 80 0 6 chr3 13545300 13545611 -204491547 - AluY SINE Alu -2 309 1 551 291 124 27 chr3 13545630 13545977 -204491181 + L1MB4 LINE L1 5445 5823 -1985 2420 98 0 13 chr3 13545977 13546284 -204490874 + AluSx SINE Alu 1 303 -9 2498 59 0 0 chr3 13546285 13546574 -204490584 + AluY SINE Alu 2 290 -21 637 137 0 0 chr3 13547551 13547646 -204489512 + AluJo/FLAM SINE Alu 35 129 -183 2207 68 0 0 chr3 13547648 13547966 -204489192 + AluY SINE Alu 1 318 0 2233 76 14 0 chr3 13548018 13548309 -204488849 + AluY SINE Alu 1 295 -16 2080 138 0 0 chr3 13549081 13549393 -204487765 + AluSx SINE Alu 1 312 0 1961 111 27 10 chr3 13549426 13549723 -204487435 + AluSx SINE Alu 1 302 -10 330 284 149 14 chr3 13550163 13550311 -204486847 + MIR SINE MIR 22 189 -73 1280 180 103 4 chr3 13550411 13550683 -204486475 + AluJo SINE Alu 1 299 -13 2486 65 0 0 chr3 13551033 13551342 -204485816 + AluSc SINE Alu 1 309 0 1824 88 81 15 chr3 13551352 13551625 -204485533 + AluSg1 SINE Alu 1 291 -18 1379 202 73 9 chr3 13551625 13551966 -204485192 + L1MB4 LINE L1 5818 6180 0 2009 122 0 3 chr3 13552073 13552368 -204484790 - AluSx SINE Alu -18 294 1 254 235 235 0 chr3 13552712 13552810 -204484348 - L2 LINE L2 -1 3312 3192 * 287 226 49 78 chr3 13552794 13552896 -204484262 + L2 LINE L2 3214 3312 -1 206 362 43 0 chr3 13552923 13553017 -204484141 + MIR SINE MIR 49 146 -116 851 186 162 25 chr3 13553275 13553479 -204483679 - AluJo SINE Alu -5 307 76 452 152 10 0 chr3 13553479 13553578 -204483580 + (TG)n Simple_repeat Simple_repeat 2 101 0 434 88 0 0 chr3 13553585 13553642 -204483516 - FLAM_A SINE Alu -36 106 50 648 154 19 0 chr3 13553679 13553783 -204483375 - FLAM_C SINE Alu -36 107 2 547 159 7 80 chr3 13553785 13553906 -204483252 + LTR37A LTR ERV1 247 358 -68 1771 149 45 0 chr3 13553906 13554195 -204482963 - AluSx SINE Alu -10 302 1 547 159 7 80 chr3 13554195 13554211 -204482947 + LTR37A LTR ERV1 358 374 -52 471 114 0 0 chr3 13554817 13554887 -204482271 + L1MB7 LINE L1 6063 6132 -52 320 113 0 0 chr3 13555169 13555222 -204481936 + Alu SINE Alu 249 301 -1 827 143 8 0 chr3 13555433 13555559 -204481599 + FLAM_C SINE Alu 1 127 -16 21 36 0 0 chr3 13555634 13555662 -204481496 + AT_rich Low_complexity Low_complexity 1 28 0 1693 121 0 112 chr3 13555883 13556223 -204480935 - AluJo SINE Alu -10 302 1 298 237 130 46 chr3 13556226 13556357 -204480801 - L2 LINE L2 -12 3301 3160 195 42 0 0 chr3 13556400 13556424 -204480734 + (TTAAA)n Simple_repeat Simple_repeat 3 26 0 610 261 112 11 chr3 13556751 13556939 -204480219 - MIR SINE MIR -18 244 38 183 280 192 48 chr3 13557769 13557894 -204479264 + MIR SINE MIR 119 261 -1 373 217 26 11 chr3 13557904 13558060 -204479098 + MIR SINE MIR 3 225 -37 335 332 175 15 chr3 13558126 13558394 -204478764 - L2 LINE L2 -38 3234 2924 196 315 11 22 chr3 13558500 13558589 -204478569 + L2 LINE L2 2949 3036 -236 2293 62 0 3 chr3 13558590 13558878 -204478280 + AluY SINE Alu 1 287 -24 549 174 7 83 chr3 13558987 13559131 -204478027 + FLAM_C SINE Alu 2 134 -9 1777 148 20 3 chr3 13559135 13559438 -204477720 + AluSx SINE Alu 1 308 -4 780 135 23 23 chr3 13559505 13559638 -204477520 - FLAM_C SINE Alu 0 133 1 1549 132 115 65 chr3 13559905 13560030 -204477128 + THE1C LTR MaLR 1 118 -257 2300 93 0 0 chr3 13560030 13560332 -204476826 - AluSg1 SINE Alu -7 302 1 1549 132 115 65 chr3 13560332 13560562 -204476596 + THE1C LTR MaLR 118 374 -1 927 133 21 0 chr3 13561171 13561314 -204475844 - MER46B DNA MER2_type 0 236 91 1646 178 75 42 chr3 13561314 13561674 -204475484 - MER21A LTR ERV1 0 931 560 350 58 0 39 chr3 13561668 13561720 -204475438 - AluJo SINE Alu -8 294 245 * 813 212 41 0 chr3 13561722 13561892 -204475266 - AluJo SINE Alu -135 177 1 1038 137 71 18 chr3 13561892 13562133 -204475025 - MER21B LTR ERV1 -376 487 214 899 141 7 0 chr3 13562141 13562283 -204474875 + AluJo SINE Alu 20 162 -150 346 113 65 0 chr3 13562283 13562345 -204474813 - MER21A LTR ERV1 -863 68 3 770 186 170 0 chr3 13562345 13562533 -204474625 - MER46B DNA MER2_type -141 95 1 2241 100 7 0 chr3 13562727 13563028 -204474130 - AluSq SINE Alu -10 303 1 207 0 0 0 chr3 13563416 13563439 -204473719 + (A)n Simple_repeat Simple_repeat 1 23 0 1785 122 75 14 chr3 13563582 13563739 -204473419 - AluSq SINE Alu -1 312 166 2232 82 0 7 chr3 13563739 13564045 -204473113 - AluY SINE Alu -6 305 2 1785 122 75 14 chr3 13564045 13564181 -204472977 - AluSq SINE Alu -147 166 1 2349 50 0 0 chr3 13564253 13564558 -204472600 + AluY SINE Alu 1 305 0 1307 184 4 16 chr3 13564907 13565157 -204472001 - AluJo SINE Alu -63 249 3 819 131 0 51 chr3 13565167 13565304 -204471854 - FLAM_C SINE Alu -2 131 2 1908 128 10 3 chr3 13565342 13565631 -204471527 - AluSx SINE Alu -20 292 2 1193 178 4 21 chr3 13565648 13565884 -204471274 - AluJo SINE Alu -4 308 77 1526 125 4 93 chr3 13565884 13566191 -204470967 + AluSx SINE Alu 29 310 0 943 155 0 42 chr3 13566191 13566359 -204470799 + AluJo/FRAM SINE Alu 135 295 -17 2334 76 0 3 chr3 13566876 13567178 -204469980 + AluYa5 SINE Alu 1 301 -10 2183 89 3 10 chr3 13567423 13567736 -204469422 + AluY SINE Alu 1 311 0 180 0 0 0 chr3 13567970 13567990 -204469168 + (TAG)n Simple_repeat Simple_repeat 1 20 0 2271 101 0 0 chr3 13568663 13568969 -204468189 + AluSg SINE Alu 1 306 -4 574 252 8 8 chr3 13568973 13569100 -204468058 + MIR SINE MIR 28 154 -108 2074 114 0 3 chr3 13570327 13570626 -204466532 + AluSx SINE Alu 1 298 -14 5669 82 25 23 chr3 13570636 13570847 -204466311 - L1MA3 LINE L1 -28 6277 6068 1985 134 0 0 chr3 13570847 13571145 -204466013 + AluSx SINE Alu 1 298 -14 5669 82 25 23 chr3 13571145 13571749 -204465409 - L1MA3 LINE L1 -237 6068 5461 6990 54 14 8 chr3 13571762 13573306 -204463852 - SVA Other Other -760 1386 29 717 93 0 0 chr3 13573308 13573415 -204463743 + (A)n Simple_repeat Simple_repeat 1 107 0 331 228 13 19 chr3 13573437 13573595 -204463563 + G-rich Low_complexity Low_complexity 3 159 0 717 247 51 11 chr3 13574028 13574206 -204462952 - AluSg/x SINE Alu -52 258 74 8487 145 62 29 chr3 13574216 13575864 -204461294 - L1M1 LINE L1 -743 5403 3776 2163 99 0 10 chr3 13575864 13576167 -204460991 - AluSx SINE Alu -12 300 1 8487 145 62 29 chr3 13576167 13576296 -204460862 - L1M1 LINE L1 -2370 3776 3653 2118 117 0 0 chr3 13576656 13576956 -204460202 + AluSx SINE Alu 1 300 -12 181 283 75 57 chr3 13577053 13577159 -204459999 + MER5C DNA MER1_type 4 111 -213 1477 108 0 0 chr3 13578382 13578585 -204458573 - AluSg/x SINE Alu -20 292 90 512 301 44 22 chr3 13579364 13579547 -204457611 + MIR SINE MIR 75 261 -1 228 322 54 47 chr3 13580000 13580149 -204457009 + L2 LINE L2 2598 2747 -567 1997 139 0 7 chr3 13580226 13580528 -204456630 - AluSx SINE Alu -12 300 1 1564 116 86 60 chr3 13580679 13580981 -204456177 + AluSx SINE Alu 1 310 -2 2087 110 7 3 chr3 13581139 13581448 -204455710 + AluSx SINE Alu 1 310 -2 2151 23 4 12 chr3 13581545 13581804 -204455354 - L1PA4 LINE L1 0 6155 5899 697 281 95 18 chr3 13582039 13582260 -204454898 - MIR SINE MIR -10 252 15 2136 119 128 44 chr3 13582299 13582712 -204454446 - MER83 LTR ERV1 0 448 1 524 272 98 53 chr3 13583424 13583498 -204453660 + MIR SINE MIR 6 75 -187 2128 102 14 0 chr3 13583498 13583792 -204453366 - AluSq SINE Alu -15 298 1 524 272 98 53 chr3 13583792 13583858 -204453300 + MIR SINE MIR 75 137 -125 2188 73 7 13 chr3 13583858 13584158 -204453000 - AluY SINE Alu -13 298 1 524 272 98 53 chr3 13584158 13584262 -204452896 + MIR SINE MIR 137 262 0 1664 204 0 0 chr3 13584367 13584675 -204452483 + AluJb SINE Alu 1 308 -4 2491 205 57 29 chr3 13584675 13585328 -204451830 + L1M3 LINE L1 4469 5139 -1007 2166 123 0 0 chr3 13586018 13586327 -204450831 + AluSc SINE Alu 1 309 0 1172 136 58 43 chr3 13586328 13586525 -204450633 + L1M3 LINE L1 5123 5332 -848 1564 201 0 3 chr3 13586525 13586828 -204450330 + AluJb SINE Alu 1 302 -10 1172 136 58 43 chr3 13586828 13586974 -204450184 + L1M3 LINE L1 5332 5474 -706 852 194 0 12 chr3 13586975 13587135 -204450023 + FRAM SINE Alu 1 150 -26 36 0 0 0 chr3 13587135 13587171 -204449987 + AT_rich Low_complexity Low_complexity 1 36 0 1991 130 13 3 chr3 13587185 13587501 -204449657 + L1M3 LINE L1 5478 5796 -384 2088 106 0 0 chr3 13587502 13587817 -204449341 + AluSx SINE Alu 1 315 0 225 0 0 0 chr3 13587830 13587855 -204449303 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 2275 82 0 0 chr3 13587859 13588150 -204449008 - AluY SINE Alu -20 291 1 1995 110 3 7 chr3 13588461 13588752 -204448406 - AluSx SINE Alu -20 292 3 262 184 23 46 chr3 13588901 13588988 -204448170 + Tigger4(Zombi) DNA MER2_type 2506 2590 -141 346 113 65 0 chr3 13588988 13589050 -204448108 + MER21A LTR ERV1 3 68 -863 899 141 7 0 chr3 13589050 13589192 -204447966 - AluJo SINE Alu -150 162 20 370 147 39 25 chr3 13589200 13589329 -204447829 + MER21A LTR ERV1 214 364 -499 330 62 0 0 chr3 13589324 13589372 -204447786 + Alu SINE Alu 255 302 0 * 2216 97 0 7 chr3 13589478 13589777 -204447381 - AluSx SINE Alu -15 297 1 1595 180 20 7 chr3 13589780 13590075 -204447083 - AluJo SINE Alu -8 304 6 517 259 113 8 chr3 13590188 13590427 -204446731 + L1ME4a LINE L1 5820 6083 -38 1762 114 52 7 chr3 13590684 13590955 -204446203 + AluSq SINE Alu 1 283 -30 189 0 0 0 chr3 13590958 13590979 -204446179 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 192 314 157 33 chr3 13591373 13591494 -204445664 - L2 LINE L2 -1 3271 3136 555 215 233 34 chr3 13592236 13592455 -204444703 + MLT1H LTR MaLR 20 194 -355 1865 157 3 3 chr3 13592455 13592767 -204444391 + AluJo SINE Alu 1 312 0 555 215 233 34 chr3 13592767 13592895 -204444263 + MLT1H LTR MaLR 194 295 -254 1892 110 34 14 chr3 13592895 13593186 -204443972 + AluSx SINE Alu 1 297 -15 555 215 233 34 chr3 13593186 13593231 -204443927 + MLT1H LTR MaLR 295 541 -8 2741 3 0 0 chr3 13593255 13593558 -204443600 + AluYa5 SINE Alu 1 303 -8 1463 170 17 35 chr3 13593755 13594044 -204443114 - AluJo SINE Alu -12 300 17 2144 115 7 0 chr3 13594205 13594510 -204442648 + AluSx SINE Alu 1 307 -5 1989 108 3 7 chr3 13594560 13594856 -204442302 + AluSc SINE Alu 1 295 -14 2360 70 0 3 chr3 13595397 13595697 -204441461 + AluY SINE Alu 1 299 -12 260 211 202 0 chr3 13595837 13595941 -204441217 - MIR SINE MIR -68 140 16 358 58 115 0 chr3 13596079 13596131 -204441027 + L1ME3 LINE L1 6093 6150 -12 2384 80 0 3 chr3 13596135 13596447 -204440711 - AluY SINE Alu 0 311 1 449 62 10 82 chr3 13596623 13596661 -204440497 - L1MB3 LINE L1 0 6183 6144 1673 123 0 12 chr3 13596661 13596914 -204440244 - AluSx SINE Alu -14 298 49 449 62 10 82 chr3 13596914 13596972 -204440186 - L1MB3 LINE L1 -39 6144 6094 806 34 0 60 chr3 13596998 13597115 -204440043 + L1PA6 LINE L1 6045 6154 0 917 154 12 117 chr3 13597134 13597374 -204439784 + AluJo SINE Alu 86 300 -12 1376 154 17 80 chr3 13597385 13597684 -204439474 - AluJo SINE Alu -30 282 3 327 377 84 0 chr3 13597950 13598117 -204439041 + L2 LINE L2 2568 2748 -566 1826 116 0 4 chr3 13598141 13598409 -204438749 + AluSc SINE Alu 18 284 -25 1865 103 10 55 chr3 13598442 13598753 -204438405 + AluSx SINE Alu 1 297 -15 258 330 21 0 chr3 13598983 13599080 -204438078 + L2 LINE L2 3085 3183 -89 2455 52 0 0 chr3 13599227 13599532 -204437626 + AluSg SINE Alu 1 305 -5 206 263 53 0 chr3 13599533 13599609 -204437549 + MIR SINE MIR 64 143 -119 2075 102 10 7 chr3 13599968 13600263 -204436895 - AluSx SINE Alu -16 296 1 2223 98 0 3 chr3 13601317 13601613 -204435545 + AluSg SINE Alu 1 295 -15 22 0 0 0 chr3 13601960 13601982 -204435176 + AT_rich Low_complexity Low_complexity 1 22 0 1545 165 49 0 chr3 13602486 13602771 -204434387 + AluSx SINE Alu 1 299 -13 2265 97 0 0 chr3 13603573 13603882 -204433276 + AluSc SINE Alu 1 309 0 204 375 68 17 chr3 13604262 13604438 -204432720 + L2 LINE L2 2572 2756 -558 210 234 0 0 chr3 13604541 13604588 -204432570 - L2 LINE L2 0 3313 3267 1707 149 10 36 chr3 13604663 13604971 -204432187 + AluJb SINE Alu 1 300 -12 2101 112 0 0 chr3 13604971 13605258 -204431900 + AluSg SINE Alu 1 287 -23 849 197 26 21 chr3 13605411 13605604 -204431554 - AluSx SINE Alu -117 195 2 1441 137 92 11 chr3 13606197 13606459 -204430699 + AluSx SINE Alu 14 296 -16 1832 158 0 10 chr3 13606467 13606765 -204430393 + AluSx SINE Alu 7 301 -11 1892 80 6 80 chr3 13606814 13607128 -204430030 - AluSg SINE Alu -19 291 1 2222 110 0 0 chr3 13607407 13607715 -204429443 - AluSc SINE Alu 0 309 2 1273 160 5 0 chr3 13607750 13607950 -204429208 - AluJb SINE Alu -25 287 87 1791 175 0 0 chr3 13607992 13608284 -204428874 + AluJo SINE Alu 1 292 -20 817 289 174 60 chr3 13609506 13610391 -204426767 + L2 LINE L2 2233 3232 -40 1831 163 0 0 chr3 13610448 13610743 -204426415 + AluJb SINE Alu 1 295 -17 261 174 0 0 chr3 13610743 13610789 -204426369 - MLT2D LTR ERVL -365 49 4 1481 216 24 0 chr3 13610813 13611109 -204426049 + L1ME LINE L1 5374 5676 -488 2386 66 0 0 chr3 13611110 13611411 -204425747 + AluY SINE Alu 1 301 -10 2059 111 0 0 chr3 13611515 13611795 -204425363 - AluSg SINE Alu -30 280 1 1707 149 10 36 chr3 13611795 13612103 -204425055 - AluJb SINE Alu -11 301 1 210 234 0 0 chr3 13612178 13612225 -204424933 + L2 LINE L2 3267 3313 0 204 375 68 17 chr3 13612328 13612504 -204424654 - L2 LINE L2 -558 2756 2572 2265 97 0 0 chr3 13612883 13613192 -204423966 - AluSc SINE Alu 0 309 1 1545 165 49 0 chr3 13613994 13614279 -204422879 - AluSx SINE Alu -13 299 1 22 0 0 0 chr3 13614783 13614805 -204422353 + AT_rich Low_complexity Low_complexity 1 22 0 2223 98 0 3 chr3 13615152 13615448 -204421710 - AluSg SINE Alu -15 295 1 2197 90 0 7 chr3 13616502 13616801 -204420357 + AluSq SINE Alu 1 297 -16 228 35 0 0 chr3 13616967 13616996 -204420162 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1860 121 11 0 chr3 13617004 13617268 -204419890 - AluSq SINE Alu -46 267 1 426 283 96 26 chr3 13617381 13617564 -204419594 - MIR SINE MIR -50 212 20 2279 87 3 16 chr3 13617944 13618256 -204418902 - AluSg SINE Alu 0 310 3 1831 174 0 0 chr3 13618576 13618880 -204418278 - AluJb SINE Alu -7 305 2 562 184 0 0 chr3 13618892 13618995 -204418163 + AluJb SINE Alu 203 305 -7 756 101 0 0 chr3 13619315 13619414 -204417744 + AluSg SINE Alu 3 101 -209 1888 160 3 0 chr3 13620185 13620492 -204416666 - AluJb SINE Alu -4 308 1 23 33 0 0 chr3 13621672 13621702 -204415456 + AT_rich Low_complexity Low_complexity 1 30 0 204 240 20 0 chr3 13622404 13622454 -204414704 - MIR SINE MIR -99 163 113 756 71 0 0 chr3 13623379 13623477 -204413681 - AluY SINE Alu -9 302 205 9164 42 2 1 chr3 13624386 13625456 -204411702 - MER11C LTR ERVK 0 1071 1 668 270 81 16 chr3 13625655 13625840 -204411318 - MIR SINE MIR -65 197 1 717 218 0 0 chr3 13626846 13626979 -204410179 + FLAM_C SINE Alu 6 138 -5 2187 106 0 0 chr3 13626980 13627273 -204409885 + AluSg SINE Alu 3 295 -15 1362 159 83 25 chr3 13627414 13627691 -204409467 + AluJo SINE Alu 1 293 -19 1907 130 7 7 chr3 13627882 13628174 -204408984 - AluSx SINE Alu -20 292 1 2140 92 14 0 chr3 13628288 13628580 -204408578 + AluSx SINE Alu 1 296 -16 2087 115 3 3 chr3 13628878 13629183 -204407975 - AluSc SINE Alu -4 305 1 1799 127 40 10 chr3 13629636 13629935 -204407223 - AluSx SINE Alu -4 308 1 1231 169 19 100 chr3 13630458 13630778 -204406380 + AluJo SINE Alu 1 294 -18 469 245 29 103 chr3 13630845 13630925 -204406233 + MER5A DNA MER1_type 1 85 -104 2102 94 7 0 chr3 13630925 13631212 -204405946 + AluSx SINE Alu 7 295 -17 469 245 29 103 chr3 13631212 13631335 -204405823 + MER5A DNA MER1_type 85 189 0 2392 70 0 0 chr3 13631542 13631843 -204405315 - AluY SINE Alu -10 301 1 1481 216 24 0 chr3 13631844 13632140 -204405018 - L1ME LINE L1 -488 5676 5374 261 174 0 0 chr3 13632164 13632210 -204404948 + MLT2D LTR ERVL 4 49 -365 1831 163 0 0 chr3 13632210 13632505 -204404653 - AluJb SINE Alu -17 295 1 817 289 174 60 chr3 13632562 13633447 -204403711 - L2 LINE L2 -40 3232 2233 1791 175 0 0 chr3 13634669 13634961 -204402197 - AluJo SINE Alu -20 292 1 31 82 0 0 chr3 13635114 13635187 -204401971 + GC_rich Low_complexity Low_complexity 1 73 0 256 252 69 44 chr3 13635451 13635610 -204401548 + AluY SINE Alu 139 301 0 1589 160 0 47 chr3 13635734 13635869 -204401289 + AluJb SINE Alu 12 152 -160 2190 98 3 0 chr3 13635869 13636174 -204400984 + AluSp SINE Alu 1 306 -7 1589 160 0 47 chr3 13636174 13636338 -204400820 + AluJb SINE Alu 152 297 -15 490 88 0 15 chr3 13637681 13637771 -204399387 - Alu SINE Alu 0 311 223 815 108 8 8 chr3 13637771 13637900 -204399258 - AluSq/x SINE Alu -184 129 1 191 257 86 76 chr3 13637942 13638047 -204399111 - MIR SINE MIR -37 225 120 2156 102 3 3 chr3 13638217 13638520 -204398638 + AluSx SINE Alu 1 303 -9 441 0 0 0 chr3 13638521 13638570 -204398588 + (TA)n Simple_repeat Simple_repeat 2 50 0 639 227 35 0 chr3 13638575 13638716 -204398442 + MER5A DNA MER1_type 5 150 -39 2012 104 31 0 chr3 13639380 13639667 -204397491 + AluSx SINE Alu 1 296 -16 2388 52 7 3 chr3 13640027 13640332 -204396826 - AluY SINE Alu -3 308 3 522 96 0 0 chr3 13640419 13640492 -204396666 + AluS SINE Alu 6 78 -235 626 183 0 40 chr3 13641568 13641694 -204395464 + FLAM_A SINE Alu 21 141 -1 2124 95 3 0 chr3 13642251 13642545 -204394613 - AluSg SINE Alu -9 301 7 2224 69 3 3 chr3 13642576 13642867 -204394291 - AluY SINE Alu -20 291 1 2346 82 0 0 chr3 13643025 13643328 -204393830 + AluSx SINE Alu 1 303 -9 2130 122 0 3 chr3 13643855 13644158 -204393000 + AluSx SINE Alu 1 302 -10 2296 65 3 19 chr3 13644286 13644596 -204392562 + AluSp SINE Alu 1 305 -8 384 313 27 34 chr3 13644879 13645026 -204392132 - MIR SINE MIR -19 243 98 2047 103 0 41 chr3 13645068 13645387 -204391771 - AluSq SINE Alu -7 306 1 2228 74 0 17 chr3 13645563 13645862 -204391296 + AluSp SINE Alu 1 294 -19 1786 144 17 7 chr3 13646192 13646490 -204390668 - AluJb SINE Alu -11 301 1 1905 118 17 7 chr3 13646530 13646817 -204390341 + AluSx SINE Alu 1 290 -22 2135 112 0 3 chr3 13646974 13647278 -204389880 + AluSq SINE Alu 1 303 -10 407 195 0 0 chr3 13647209 13647286 -204389872 + AluSp/q SINE Alu 235 311 -2 180 111 0 0 chr3 13647278 13647305 -204389853 + (GGGA)n Simple_repeat Simple_repeat 1 27 0 * 1787 114 28 48 chr3 13647387 13647676 -204389482 + AluJb SINE Alu 1 283 -29 2496 71 0 7 chr3 13647676 13647984 -204389174 + AluSx SINE Alu 1 306 -6 219 197 115 0 chr3 13649089 13649150 -204388008 - L2 LINE L2 -455 2859 2792 1628 153 34 27 chr3 13649708 13649970 -204387188 + AluJo SINE Alu 1 264 -48 2010 141 7 10 chr3 13650138 13650444 -204386714 - AluSx SINE Alu -7 305 1 2180 103 14 0 chr3 13650726 13651018 -204386140 + AluSx SINE Alu 6 301 -11 280 190 0 127 chr3 13651187 13651242 -204385916 + Tigger2 DNA MER2_type 1 31 -403 1989 150 3 3 chr3 13651242 13651535 -204385623 - AluSx SINE Alu -19 293 1 280 190 0 127 chr3 13651535 13651558 -204385600 + Tigger2 DNA MER2_type 31 55 -379 * 1234 118 98 10 chr3 13651542 13651745 -204385413 + Tigger2 DNA MER2_type 2267 2487 -231 427 99 56 14 chr3 13651745 13651849 -204385309 - AluSc SINE Alu 0 311 205 * 485 73 0 0 chr3 13651844 13651912 -204385246 + Alu SINE Alu 236 303 -9 2131 132 0 3 chr3 13651922 13652217 -204384941 + AluSx SINE Alu 1 294 -18 1392 73 0 0 chr3 13652779 13652944 -204384214 - AluSg/x SINE Alu -14 298 134 2189 134 0 0 chr3 13652944 13653242 -204383916 - AluSx SINE Alu -14 298 1 1059 159 43 19 chr3 13653861 13654069 -204383089 + L1MB7 LINE L1 5925 6137 -47 198 277 0 21 chr3 13654212 13654259 -204382899 + MIR3 SINE MIR 114 159 -49 765 186 117 0 chr3 13654486 13654631 -204382527 - AluSp SINE Alu -17 296 135 2138 79 6 103 chr3 13654632 13654972 -204382186 - AluSx SINE Alu -5 307 1 1658 153 0 62 chr3 13655178 13655485 -204381673 + AluJo SINE Alu 6 293 -19 2319 96 3 0 chr3 13656179 13656481 -204380677 - AluSg1 SINE Alu -6 303 1 2408 93 3 0 chr3 13656481 13656783 -204380375 - AluSx SINE Alu -9 303 1 313 198 40 87 chr3 13656880 13656921 -204380237 - MLT1D LTR MaLR 0 505 464 2309 93 0 23 chr3 13656921 13657231 -204379927 + AluSc SINE Alu 1 303 -6 313 198 40 87 chr3 13657231 13657315 -204379843 - MLT1D LTR MaLR -41 464 386 364 258 29 1 chr3 13657315 13657400 -204379758 - AluJ/FLAM SINE Alu -224 78 1 * 1607 250 36 50 chr3 13657400 13657861 -204379297 - MLT1E2 LTR MaLR -132 494 39 2047 127 0 7 chr3 13657861 13658152 -204379006 - AluSx SINE Alu -22 290 2 1607 250 36 50 chr3 13658152 13658179 -204378979 - MLT1E2 LTR MaLR -587 39 13 2398 102 0 0 chr3 13658557 13658861 -204378297 + AluSx SINE Alu 1 304 -8 2432 57 0 20 chr3 13660053 13660354 -204376804 + AluY SINE Alu 1 295 -16 1933 110 57 11 chr3 13660546 13660827 -204376331 + AluSx SINE Alu 1 294 -18 2185 120 0 10 chr3 13661064 13661363 -204375795 + AluSq SINE Alu 1 296 -17 655 198 9 0 chr3 13661428 13661544 -204375614 + FLAM_A SINE Alu 1 117 -16 23 33 0 0 chr3 13661544 13661574 -204375584 + AT_rich Low_complexity Low_complexity 1 30 0 2340 94 0 3 chr3 13661580 13661877 -204375281 - AluSc SINE Alu -12 297 2 29 0 0 0 chr3 13661913 13661942 -204375216 + AT_rich Low_complexity Low_complexity 1 29 0 1287 156 13 36 chr3 13661962 13662187 -204374971 + AluJo SINE Alu 75 294 -18 942 29 0 0 chr3 13662426 13662531 -204374627 + AluSc SINE Alu 1 105 -204 1129 111 81 77 chr3 13662671 13662906 -204374252 + MER46A DNA MER2_type 1 236 0 1877 153 3 7 chr3 13662934 13663222 -204373936 + AluJo SINE Alu 1 287 -25 703 172 52 0 chr3 13663234 13663368 -204373790 + FLAM_C SINE Alu 2 142 -1 1944 143 0 31 chr3 13663565 13663885 -204373273 + AluSx SINE Alu 1 311 0 1590 131 0 0 chr3 13663971 13664193 -204372965 - AluSg/x SINE Alu -6 304 83 962 115 0 0 chr3 13664226 13664356 -204372802 - FLAM_C SINE Alu -2 131 2 535 87 0 33 chr3 13664385 13664477 -204372681 + FLAM_A SINE Alu 54 142 0 336 324 83 0 chr3 13664529 13664674 -204372484 - MIR3 SINE MIR 0 208 52 22 0 0 0 chr3 13664948 13664970 -204372188 + AT_rich Low_complexity Low_complexity 1 22 0 1529 191 7 7 chr3 13664975 13665258 -204371900 + AluJo SINE Alu 6 288 -24 218 269 104 0 chr3 13665375 13665442 -204371716 - L2 LINE L2 -50 3222 3149 288 192 112 36 chr3 13665690 13665812 -204371346 + L1ME1 LINE L1 5226 5365 -814 2038 125 54 0 chr3 13665812 13666107 -204371051 + AluSx SINE Alu 1 311 -1 288 192 112 36 chr3 13666107 13666123 -204371035 + L1ME1 LINE L1 5365 5378 -801 540 194 0 0 chr3 13666137 13666235 -204370923 + U13 snRNA snRNA 5 102 -2 1896 142 55 2 chr3 13666256 13666708 -204370450 + L1MA9 LINE L1 5193 5780 -532 2343 78 3 0 chr3 13666709 13666992 -204370166 + AluSp SINE Alu 2 285 -28 762 198 25 35 chr3 13667008 13667210 -204369948 + L1MA9 LINE L1 5935 6134 -178 1093 196 56 82 chr3 13667210 13667304 -204369854 - AluJb SINE Alu -14 298 203 3429 109 77 38 chr3 13667304 13667862 -204369296 + LTR19B LTR ERV1 1 580 0 1656 101 0 0 chr3 13667862 13668071 -204369087 - AluSq SINE Alu -104 209 1 1093 196 56 82 chr3 13668071 13668281 -204368877 - AluJb SINE Alu -107 205 1 360 148 0 0 chr3 13668298 13668352 -204368806 + L1ME1 LINE L1 5365 5418 -748 6068 133 291 14 chr3 13668353 13669681 -204367477 - pTR5 LTR ERV1 0 2438 743 2198 188 85 62 chr3 13669681 13669767 -204367391 + L1ME1 LINE L1 5413 5496 -670 2460 70 7 0 chr3 13669767 13670068 -204367090 + AluY SINE Alu 1 303 -8 2198 188 85 62 chr3 13670068 13670594 -204366564 + L1ME1 LINE L1 5496 6039 -127 634 76 0 0 chr3 13670607 13670686 -204366472 - AluSg/x SINE Alu -14 296 218 2245 94 0 13 chr3 13670863 13671162 -204365996 - AluY SINE Alu -16 295 1 2032 135 13 7 chr3 13671280 13671584 -204365574 - AluJb SINE Alu -6 306 1 2181 112 7 3 chr3 13671820 13672124 -204365034 - AluSx SINE Alu -7 305 1 1966 137 4 0 chr3 13672400 13672678 -204364480 - AluJb SINE Alu -15 297 19 2000 132 7 3 chr3 13672827 13673116 -204364042 + AluSx SINE Alu 1 290 -22 408 166 122 0 chr3 13673635 13673774 -204363384 - AluYa5 SINE Alu -16 285 130 1508 176 20 20 chr3 13674287 13674582 -204362576 + AluSc SINE Alu 6 300 -9 28 48 0 0 chr3 13674880 13674922 -204362236 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr3 13676116 13676138 -204361020 + AT_rich Low_complexity Low_complexity 1 22 0 983 115 7 14 chr3 13676319 13676467 -204360691 - AluSg/x SINE Alu -7 303 157 751 168 0 24 chr3 13676790 13676915 -204360243 + FLAM_C SINE Alu 2 123 -20 1441 174 0 38 chr3 13677091 13677355 -204359803 - AluJb SINE Alu -31 281 28 445 275 76 65 chr3 13677389 13677771 -204359387 + L1ME LINE L1 5297 5682 -439 682 130 30 0 chr3 13677788 13677888 -204359270 + U6 snRNA snRNA 1 103 -4 277 70 70 0 chr3 13678043 13678086 -204359072 - MADE1 DNA Mariner 0 80 35 2178 109 0 3 chr3 13678241 13678524 -204358634 - AluSx SINE Alu -26 286 5 2353 103 0 3 chr3 13678816 13679117 -204358041 - AluSx SINE Alu -12 300 1 233 311 0 0 chr3 13679374 13679435 -204357723 + L2 LINE L2 3211 3271 -1 24 0 0 0 chr3 13679794 13679818 -204357340 + AT_rich Low_complexity Low_complexity 1 24 0 2433 72 7 7 chr3 13680266 13680572 -204356586 - AluY SINE Alu -5 306 1 280 170 0 19 chr3 13680700 13680753 -204356405 + MER5B DNA MER1_type 5 56 -122 1818 162 3 23 chr3 13681152 13681461 -204355697 + AluJb SINE Alu 5 307 -5 301 188 145 34 chr3 13681578 13681695 -204355463 + L1ME4a LINE L1 5976 6105 -16 2111 114 3 0 chr3 13682142 13682432 -204354726 - AluSg SINE Alu -19 291 1 372 89 0 18 chr3 13684622 13684835 -204352323 + AluSx SINE Alu 1 292 -8 201 263 0 0 chr3 13685281 13685338 -204351820 + T-rich Low_complexity Low_complexity 1 57 0 273 119 24 0 chr3 13685338 13685380 -204351778 - LTR23 LTR ERV1 -78 359 317 2355 104 0 0 chr3 13685396 13685703 -204351455 - AluY SINE Alu -3 308 2 2265 115 0 0 chr3 13685832 13686136 -204351022 - AluSg SINE Alu -6 304 1 2403 83 0 3 chr3 13686289 13686589 -204350569 - AluY SINE Alu -12 299 1 497 289 81 9 chr3 13686977 13687188 -204349970 - L3 LINE CR1 -726 851 626 2202 113 0 3 chr3 13688539 13688841 -204348317 - AluSq SINE Alu -12 301 1 267 357 60 12 chr3 13690048 13690300 -204346858 - L2 LINE L2 -203 3069 2806 2482 70 3 0 chr3 13690581 13690880 -204346278 + AluY SINE Alu 3 302 -9 2121 111 17 0 chr3 13691041 13691329 -204345829 + AluSp SINE Alu 1 293 -20 2902 10 0 3 chr3 13691335 13691647 -204345511 + AluYa5 SINE Alu 1 311 0 21 0 0 0 chr3 13691965 13691986 -204345172 + AT_rich Low_complexity Low_complexity 1 21 0 266 179 179 32 chr3 13692012 13692107 -204345051 - MIR SINE MIR -79 183 75 1322 104 0 6 chr3 13692757 13692930 -204344228 - AluSg/x SINE Alu -17 293 122 7489 17 1 0 chr3 13692930 13693804 -204343354 + L1PA3 LINE L1 5310 6184 0 191 143 114 0 chr3 13693949 13693984 -204343174 - L2 LINE L2 -13 3259 3221 1737 149 0 4 chr3 13694185 13694467 -204342691 + AluJb SINE Alu 23 303 0 864 130 0 0 chr3 13694571 13694709 -204342449 + (TA)n Simple_repeat Simple_repeat 2 139 0 2623 55 0 0 chr3 13694709 13695017 -204342141 - AluY SINE Alu -3 308 1 23 0 0 0 chr3 13695075 13695098 -204342060 + AT_rich Low_complexity Low_complexity 1 23 0 237 313 12 0 chr3 13695292 13695375 -204341783 - L1MC/D LINE L1 -1911 5897 5814 1960 168 26 8 chr3 13695381 13695762 -204341396 - L1MB4 LINE L1 -1 6179 5792 514 83 46 37 chr3 13695766 13695874 -204341284 + AluY SINE Alu 2 110 -201 225 188 0 0 chr3 13696045 13696093 -204341065 + A-rich Low_complexity Low_complexity 1 48 0 183 156 0 0 chr3 13696294 13696326 -204340832 + T-rich Low_complexity Low_complexity 1 32 0 6182 65 31 9 chr3 13696594 13697619 -204339539 - SVA Other Other -518 868 32 910 139 42 69 chr3 13697756 13697775 -204339383 - AluJo SINE Alu -92 220 202 2438 74 0 6 chr3 13697775 13698087 -204339071 - AluY SINE Alu -1 310 1 2265 108 7 0 chr3 13698090 13698385 -204338773 - AluSp SINE Alu -16 297 1 910 139 42 69 chr3 13698385 13698506 -204338652 - AluJo SINE Alu -112 200 1 465 246 131 0 chr3 13698518 13698709 -204338449 + L1ME LINE L1 5603 5818 -303 22 35 0 0 chr3 13698768 13698797 -204338361 + AT_rich Low_complexity Low_complexity 1 29 0 2316 92 0 3 chr3 13698838 13699133 -204338025 + AluSc SINE Alu 1 294 -15 2313 97 3 3 chr3 13699307 13699615 -204337543 + AluSp SINE Alu 1 308 -5 2206 125 0 6 chr3 13699680 13699991 -204337167 - AluSx SINE Alu -3 309 1 801 237 6 17 chr3 13700015 13700192 -204336966 + MER5B DNA MER1_type 4 178 0 427 226 182 17 chr3 13700363 13700420 -204336738 + MIR SINE MIR 2 48 -214 2456 171 88 11 chr3 13700420 13700864 -204336294 - MER66A LTR ERV1 0 478 1 427 226 182 17 chr3 13700864 13700987 -204336171 + MIR SINE MIR 48 212 -50 409 296 22 79 chr3 13701806 13702083 -204335075 - MIR3 SINE MIR 0 262 2 272 294 125 22 chr3 13702106 13702242 -204334916 + MIR SINE MIR 61 210 -52 727 215 101 0 chr3 13702331 13702489 -204334669 + MIR SINE MIR 86 259 -3 226 111 56 0 chr3 13702512 13702566 -204334592 - LTR66 LTR ERVL -171 439 383 1805 141 39 0 chr3 13702585 13702868 -204334290 - AluJo SINE Alu -18 294 1 1162 158 42 0 chr3 13703008 13703198 -204333960 - AluJo SINE Alu 0 312 115 1891 117 7 33 chr3 13703198 13703497 -204333661 + AluSg SINE Alu 1 291 -19 427 290 70 55 chr3 13703993 13704193 -204332965 - MER63A DNA MER1_type -3 207 5 287 289 125 13 chr3 13704621 13704773 -204332385 + MIR SINE MIR 72 240 -22 309 209 0 30 chr3 13705317 13705384 -204331774 + L3 LINE CR1 1227 1291 -286 347 263 74 0 chr3 13706180 13706275 -204330883 + L2 LINE L2 3195 3296 -17 260 250 15 0 chr3 13706357 13706425 -204330733 + (TA)n Simple_repeat Simple_repeat 2 70 0 210 202 0 56 chr3 13706714 13706803 -204330355 + A-rich Low_complexity Low_complexity 1 84 0 4709 238 32 7 chr3 13706920 13708110 -204329048 - L1P LINE L1 -3497 2649 1430 14612 71 19 7 chr3 13708229 13709194 -204327964 + L1P LINE L1 2706 3658 -2488 366 23 0 0 chr3 13709194 13709237 -204327921 + (CA)n Simple_repeat Simple_repeat 2 44 0 14612 71 19 7 chr3 13709237 13710251 -204326907 + L1P LINE L1 3658 4708 -1438 181 361 85 23 chr3 13710393 13710523 -204326635 - MIR3 SINE MIR -61 147 10 32 57 0 0 chr3 13710824 13710877 -204326281 + AT_rich Low_complexity Low_complexity 1 53 0 291 195 109 70 chr3 13710877 13711005 -204326153 - MER113 DNA MER1_type? -386 135 3 203 171 0 0 chr3 13711069 13711110 -204326048 + (TA)n Simple_repeat Simple_repeat 2 42 0 1571 228 78 38 chr3 13711635 13712162 -204324996 + L1ME1 LINE L1 5593 6140 -26 293 250 114 23 chr3 13712189 13712277 -204324881 + L1MC/D LINE L1 5476 5571 -2471 3986 92 58 0 chr3 13712295 13712860 -204324298 - L1PA10 LINE L1 0 6168 5571 334 269 0 48 chr3 13713009 13713195 -204323963 + A-rich Low_complexity Low_complexity 2 178 0 12243 80 13 2 chr3 13713657 13715325 -204321833 - L1PA10 LINE L1 -812 5334 3649 356 297 46 3 chr3 13715435 13715574 -204321584 + MIR SINE MIR 48 191 -64 436 192 208 0 chr3 13716132 13716252 -204320906 + MIR SINE MIR 28 172 -90 434 312 60 44 chr3 13716810 13717060 -204320098 + MIR SINE MIR 8 261 -1 187 162 88 88 chr3 13717054 13717122 -204320036 - MIR SINE MIR -111 151 84 * 320 313 68 7 chr3 13717358 13717505 -204319653 - L3 LINE CR1 -794 783 628 7640 100 17 2 chr3 13717930 13718967 -204318191 - L1P3 LINE L1 -5408 1053 1 359 279 299 0 chr3 13719867 13720111 -204317047 - MER5C DNA MER1_type -6 318 2 2688 159 98 12 chr3 13721165 13721729 -204315429 - LTR1B LTR ERV1 0 785 145 401 264 43 14 chr3 13722176 13722316 -204314842 + MLT1K LTR MaLR 374 517 -71 278 265 12 36 chr3 13722390 13722473 -204314685 + MIR SINE MIR 121 201 -61 214 314 64 64 chr3 13722544 13722700 -204314458 + MIR SINE MIR 20 175 -87 234 360 67 0 chr3 13724117 13724192 -204312966 + L2 LINE L2 3143 3222 -50 596 338 40 4 chr3 13724212 13724440 -204312718 + MIR SINE MIR 20 255 -7 280 296 93 9 chr3 13724904 13725012 -204312146 - MIR SINE MIR -52 210 94 749 344 106 34 chr3 13725309 13726015 -204311143 + L2 LINE L2 2083 2839 -475 743 279 72 34 chr3 13726445 13727088 -204310070 + L1ME LINE L1 36 756 -5640 276 250 0 56 chr3 13727088 13727160 -204309998 + AluYb8 SINE Alu 125 192 -116 384 211 0 0 chr3 13727161 13727232 -204309926 - AluJ/FRAM SINE Alu 0 302 232 8569 143 37 20 chr3 13727865 13729286 -204307872 + Tigger1 DNA MER2_type 1 1444 -974 1300 253 103 54 chr3 13729386 13730086 -204307072 + L1MC4 LINE L1 7309 8042 0 557 277 158 33 chr3 13730367 13731261 -204305897 + L1ME LINE L1 4534 5546 -685 2730 67 56 0 chr3 13731361 13731667 -204305491 - L1P LINE L1 -3512 2634 2302 181 57 57 0 chr3 13731667 13731702 -204305456 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2730 67 56 0 chr3 13731702 13731768 -204305390 - L1P LINE L1 -3844 2302 2241 490 316 60 23 chr3 13731791 13732006 -204305152 + MIR SINE MIR 33 255 -7 1701 302 32 13 chr3 13732184 13732741 -204304417 + L1M2b LINE L1 19 586 -6623 316 155 121 0 chr3 13732744 13732802 -204304356 + Charlie3 DNA MER1_type 6 70 -2640 * 1436 162 57 142 chr3 13732788 13733140 -204304018 + Charlie3 DNA MER1_type 17 2711 0 361 248 77 43 chr3 13733209 13733326 -204303832 + L1M2b LINE L1 677 797 -6412 337 270 124 0 chr3 13733478 13733567 -204303591 + L1M2b LINE L1 1439 1538 -5671 1832 189 20 3 chr3 13733667 13734017 -204303141 - L1PA13 LINE L1 -4900 2674 2319 209 83 28 0 chr3 13734066 13734102 -204303056 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 242 339 38 34 chr3 13734957 13735196 -204301962 - L1PA13 LINE L1 -7341 240 1 1788 183 6 10 chr3 13735229 13735541 -204301617 - AluSx SINE Alu -1 311 1 1821 173 60 33 chr3 13735998 13736363 -204300795 + THE1C LTR MaLR 1 375 0 1550 247 57 28 chr3 13736738 13737385 -204299773 - L1MC4a LINE L1 -613 7195 6480 371 313 17 0 chr3 13738376 13738491 -204298667 - L1ME3A LINE L1 -277 5893 5777 1401 128 9 22 chr3 13738660 13738886 -204298272 - L1MB3 LINE L1 -9 6174 5952 1106 239 46 0 chr3 13738910 13739190 -204297968 - L1MC4 LINE L1 -456 7586 7294 2067 116 0 20 chr3 13739200 13739493 -204297665 - AluSq SINE Alu -26 287 1 269 213 16 16 chr3 13739494 13739555 -204297603 + MIR SINE MIR 202 262 0 241 287 25 82 chr3 13740036 13740158 -204297000 - MER5B DNA MER1_type -29 149 35 1996 108 7 10 chr3 13740161 13740449 -204296709 - AluY SINE Alu -20 291 5 408 285 52 89 chr3 13740887 13741076 -204296082 + HAL1 LINE L1 11 205 -2302 717 224 6 33 chr3 13741076 13741259 -204295899 + MER104 DNA MER2_type 2 179 -1 408 285 52 89 chr3 13741259 13741507 -204295651 + HAL1 LINE L1 205 432 -2075 275 130 74 0 chr3 13741519 13741573 -204295585 - MER53 DNA DNA -6 183 126 * 400 194 21 11 chr3 13741558 13741651 -204295507 + MER53 DNA DNA 88 181 -8 2120 119 0 31 chr3 13741795 13742113 -204295045 - AluSg SINE Alu -2 308 1 2231 127 0 3 chr3 13742126 13742433 -204294725 - AluSx SINE Alu -6 306 1 180 271 217 43 chr3 13742456 13742663 -204294495 + L2 LINE L2 2851 3093 -179 241 282 130 15 chr3 13742781 13742912 -204294246 - MIR SINE MIR -9 253 108 233 118 0 0 chr3 13743140 13743174 -204293984 + (TG)n Simple_repeat Simple_repeat 2 35 0 241 216 21 103 chr3 13744506 13744603 -204292555 - MIR SINE MIR -14 248 160 207 88 0 0 chr3 13745107 13745141 -204292017 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 750 200 0 0 chr3 13745141 13745261 -204291897 - FLAM_C SINE Alu -13 120 1 299 200 17 0 chr3 13745300 13745360 -204291798 + MIR SINE MIR 88 148 -60 226 345 81 0 chr3 13745837 13745924 -204291234 + MIR SINE MIR 29 122 -86 2259 90 3 3 chr3 13746236 13746536 -204290622 - AluSp SINE Alu 0 313 14 2235 93 0 0 chr3 13746684 13746973 -204290185 - AluY SINE Alu -17 294 6 447 100 0 0 chr3 13746993 13747063 -204290095 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 1917 157 0 0 chr3 13747063 13747343 -204289815 - AluJb SINE Alu -32 280 1 2069 151 0 3 chr3 13747394 13747705 -204289453 - AluJo SINE Alu -2 310 1 2144 108 0 7 chr3 13747718 13748014 -204289144 - AluSq SINE Alu -19 294 1 676 203 112 56 chr3 13748196 13748393 -204288765 - MIR SINE MIR -50 212 5 436 232 165 61 chr3 13748416 13748580 -204288578 - MIR SINE MIR -60 202 22 405 245 129 29 chr3 13749372 13749519 -204287639 + MIR SINE MIR 6 166 -96 224 263 125 0 chr3 13749567 13749647 -204287511 + MIR SINE MIR 169 258 -4 351 308 19 0 chr3 13749655 13749762 -204287396 - MIR SINE MIR -108 154 46 2388 102 0 0 chr3 13749881 13750184 -204286974 - AluSx SINE Alu -9 303 1 577 234 48 30 chr3 13750187 13750354 -204286804 + L2 LINE L2 3135 3304 -9 1662 144 3 59 chr3 13750368 13750673 -204286485 + AluJo SINE Alu 24 311 -1 692 295 189 19 chr3 13750887 13751369 -204285789 - L3 LINE CR1 -291 1286 723 460 287 174 0 chr3 13751998 13752193 -204284965 - MIR SINE MIR -14 248 20 1031 114 0 0 chr3 13752214 13752346 -204284812 - AluSq/x SINE Alu -181 132 1 2205 127 0 0 chr3 13752892 13753191 -204283967 - AluSx SINE Alu -13 299 1 595 249 147 62 chr3 13753241 13753663 -204283495 - HAL1 LINE L1 -72 2435 1978 565 284 43 34 chr3 13753727 13754079 -204283079 + L1MC5 LINE L1 7428 7782 -179 2119 132 0 7 chr3 13754141 13754436 -204282722 + AluSx SINE Alu 1 293 -19 2578 63 0 0 chr3 13754436 13754739 -204282419 + AluY SINE Alu 1 303 -8 217 299 19 58 chr3 13755044 13755198 -204281960 + L2 LINE L2 2944 3091 -181 2308 93 3 3 chr3 13755967 13756269 -204280889 - AluSx SINE Alu -10 302 1 332 296 21 21 chr3 13756271 13756457 -204280701 - L1MC4a LINE L1 -1904 5904 5719 2442 87 0 6 chr3 13756714 13757026 -204280132 + AluY SINE Alu 1 310 -1 1342 211 73 35 chr3 13757035 13757404 -204279754 + L1MC4 LINE L1 7516 7898 -144 2022 146 0 0 chr3 13757813 13758094 -204279064 + AluSx SINE Alu 1 281 -31 2130 140 3 3 chr3 13758096 13758403 -204278755 + AluJb SINE Alu 1 307 -5 2420 91 0 0 chr3 13758427 13758724 -204278434 - AluSx SINE Alu -15 297 1 513 286 42 37 chr3 13758786 13759139 -204278019 - L1MC5 LINE L1 -179 7782 7428 586 249 147 62 chr3 13759203 13759625 -204277533 + HAL1 LINE L1 1978 2435 -72 2231 124 0 0 chr3 13759675 13759974 -204277184 + AluSx SINE Alu 1 299 -13 1031 114 0 0 chr3 13760520 13760652 -204276506 + AluSq/x SINE Alu 1 132 -180 460 287 174 0 chr3 13760673 13760868 -204276290 + MIR SINE MIR 20 248 -14 692 295 189 19 chr3 13761497 13761979 -204275179 + L3 LINE CR1 723 1286 -291 206 234 0 0 chr3 13762150 13762197 -204274961 + L3 LINE CR1 1336 1382 -195 2160 126 7 13 chr3 13762691 13763001 -204274157 + AluSx SINE Alu 1 308 -4 2248 89 10 17 chr3 13763006 13763308 -204273850 + AluSq SINE Alu 1 300 -13 2481 77 7 0 chr3 13763308 13763608 -204273550 + AluY SINE Alu 1 302 -9 616 161 0 73 chr3 13763610 13763734 -204273424 - AluJo/FLAM SINE Alu -196 116 2 407 141 12 47 chr3 13763751 13763836 -204273322 - FLAM_A SINE Alu -20 122 41 2159 142 0 3 chr3 13763836 13764132 -204273026 - AluSx SINE Alu -17 295 1 263 293 19 19 chr3 13764228 13764334 -204272824 + L2 LINE L2 2947 3052 -220 239 301 125 7 chr3 13764475 13764611 -204272547 - MIR SINE MIR -3 259 108 225 94 0 0 chr3 13764841 13764873 -204272285 + (TG)n Simple_repeat Simple_repeat 2 33 0 245 299 75 54 chr3 13766205 13766352 -204270806 - MIR SINE MIR -14 248 99 682 193 0 0 chr3 13766809 13766955 -204270203 - FLAM_C SINE Alu 0 151 6 288 200 17 0 chr3 13766999 13767059 -204270099 + MIR SINE MIR 88 148 -60 215 313 111 63 chr3 13767536 13767694 -204269464 + MIR SINE MIR 29 192 -70 2350 83 3 3 chr3 13767936 13768236 -204268922 - AluSp SINE Alu 0 313 14 2295 101 0 0 chr3 13768376 13768673 -204268485 - AluY SINE Alu -9 302 6 447 100 0 0 chr3 13768693 13768763 -204268395 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 1967 157 0 0 chr3 13768763 13769043 -204268115 - AluJb SINE Alu -32 280 1 2131 151 0 3 chr3 13769094 13769406 -204267752 - AluJo SINE Alu -1 311 1 2257 98 0 7 chr3 13769419 13769715 -204267443 - AluSq SINE Alu -19 294 1 542 303 118 26 chr3 13769735 13770082 -204267076 + L1MC/D LINE L1 5445 5823 -1985 1190 113 40 28 chr3 13770082 13770259 -204266899 + AluSq SINE Alu 1 179 -134 945 98 8 0 chr3 13770475 13770598 -204266560 + AluSg/x SINE Alu 170 293 -17 680 187 88 103 chr3 13771290 13771352 -204265806 - MIR SINE MIR 0 262 201 2379 98 0 0 chr3 13771352 13771647 -204265511 + AluSx SINE Alu 1 295 -17 680 187 88 103 chr3 13771647 13771846 -204265312 - MIR SINE MIR -61 201 5 413 238 165 61 chr3 13771869 13772033 -204265125 - MIR SINE MIR -60 202 22 403 259 122 27 chr3 13772823 13772970 -204264188 + MIR SINE MIR 6 166 -96 217 275 125 0 chr3 13773018 13773098 -204264060 + MIR SINE MIR 169 258 -4 352 299 19 0 chr3 13773106 13773213 -204263945 - MIR SINE MIR -108 154 46 2388 102 0 0 chr3 13773331 13773634 -204263524 - AluSx SINE Alu -9 303 1 584 226 48 36 chr3 13773637 13773805 -204263353 + L2 LINE L2 3135 3304 -9 1534 162 26 37 chr3 13773819 13774090 -204263068 + AluJb SINE Alu 24 291 -21 2313 98 24 0 chr3 13774746 13775043 -204262115 - AluSx SINE Alu -8 304 1 708 238 48 29 chr3 13775288 13775494 -204261664 - MIR SINE MIR -51 211 2 294 278 52 0 chr3 13776025 13776122 -204261036 - MIR SINE MIR -17 245 144 1683 167 52 7 chr3 13776139 13776426 -204260732 - AluJo SINE Alu -12 300 1 2448 99 0 0 chr3 13776455 13776767 -204260391 + AluSx SINE Alu 1 312 0 2533 91 0 0 chr3 13776791 13777098 -204260060 + AluSx SINE Alu 4 310 -2 2240 98 24 3 chr3 13777819 13778114 -204259044 + AluSg SINE Alu 1 301 -9 497 233 73 0 chr3 13778122 13778272 -204258886 + L1ME1 LINE L1 5767 5927 -239 618 200 77 0 chr3 13779120 13779250 -204257908 - MIR SINE MIR -34 228 89 313 196 0 0 chr3 13779257 13779313 -204257845 + MER116 DNA Mariner 3 58 -22 2205 115 7 3 chr3 13779313 13779608 -204257550 - AluSx SINE Alu -16 296 1 2022 146 0 0 chr3 13779610 13779891 -204257267 - AluSx SINE Alu -31 281 1 1663 211 301 39 chr3 13780300 13780678 -204256480 - L1MC4 LINE L1 -144 7898 7620 2475 80 0 6 chr3 13780678 13780989 -204256169 - AluY SINE Alu -2 309 1 1663 211 301 39 chr3 13780989 13781050 -204256108 - L1MC4 LINE L1 -422 7620 7576 2031 144 0 7 chr3 13781050 13781341 -204255817 + AluJo SINE Alu 1 289 -23 1663 211 301 39 chr3 13781341 13781526 -204255632 - L1MC4 LINE L1 -466 7576 7441 1696 168 18 18 chr3 13781526 13781849 -204255309 - AluJo SINE Alu 0 323 1 204 40 0 0 chr3 13781849 13781874 -204255284 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1663 211 301 39 chr3 13781874 13782201 -204254957 - L1MC4 LINE L1 -600 7442 6639 186 327 144 0 chr3 13782294 13782398 -204254760 - MIR SINE MIR -25 237 119 2410 56 3 43 chr3 13782448 13782753 -204254405 - AluY SINE Alu -18 293 1 540 193 107 7 chr3 13782837 13783020 -204254138 + L1M4 LINE L1 4981 5185 -961 939 154 46 36 chr3 13783029 13783086 -204254072 + L1MB7 LINE L1 5107 5162 -1012 2189 117 0 3 chr3 13783086 13783377 -204253781 - AluSx SINE Alu -22 290 1 939 154 46 36 chr3 13783377 13783608 -204253550 + L1MB7 LINE L1 5162 5393 -781 1913 174 0 3 chr3 13783608 13783901 -204253257 + AluJb SINE Alu 1 292 -20 939 154 46 36 chr3 13783901 13783945 -204253213 + L1MB7 LINE L1 5393 5435 -739 875 144 0 27 chr3 13783970 13784116 -204253042 + FLAM_C SINE Alu 1 142 -1 2201 122 3 3 chr3 13784153 13784456 -204252702 + AluSp SINE Alu 1 303 -10 1666 168 14 50 chr3 13784468 13784604 -204252554 + L1MB7 LINE L1 5477 5616 -568 1729 180 3 26 chr3 13784604 13784909 -204252249 + AluJo SINE Alu 9 306 -6 1666 168 14 50 chr3 13784909 13785135 -204252023 + L1MB7 LINE L1 5616 5826 -358 1476 186 4 8 chr3 13785145 13785397 -204251761 + AluJo SINE Alu 3 253 -59 581 159 0 0 chr3 13785453 13785560 -204251598 + L1MB7 LINE L1 6062 6168 -16 2118 137 10 0 chr3 13786533 13786832 -204250326 + AluSx SINE Alu 1 302 -10 682 221 30 43 chr3 13786833 13786954 -204250204 - LTR37A LTR ERV1 -60 366 248 1295 191 47 85 chr3 13786954 13787273 -204249885 + AluJo SINE Alu 1 307 -5 682 221 30 43 chr3 13787273 13787382 -204249776 - LTR37A LTR ERV1 -178 248 139 340 271 143 15 chr3 13787534 13787699 -204249459 - MIR SINE MIR -53 155 10 2148 137 0 6 chr3 13788123 13788437 -204248721 - AluSx SINE Alu 0 312 1 2009 149 3 0 chr3 13788442 13788744 -204248414 - AluSx SINE Alu -9 303 1 571 206 0 30 chr3 13789522 13789653 -204247505 + FLAM_A SINE Alu 1 127 -6 2172 125 3 0 chr3 13790049 13790346 -204246812 + AluSx SINE Alu 1 298 -14 1858 135 24 17 chr3 13790412 13790708 -204246450 + AluJo SINE Alu 1 298 -14 2266 115 0 10 chr3 13790730 13791043 -204246115 + AluSg SINE Alu 1 310 0 2569 54 0 0 chr3 13791939 13792233 -204244925 - AluY SINE Alu -17 294 1 200 265 36 48 chr3 13793889 13793972 -204243186 - L2 LINE L2 -208 3105 3024 1967 132 51 0 chr3 13794906 13795202 -204241956 + AluSx SINE Alu 1 311 -1 1141 61 0 0 chr3 13795202 13795334 -204241824 + AluY SINE Alu 1 132 -179 236 261 161 28 chr3 13796621 13796741 -204240417 - L2 LINE L2 -171 3142 2989 2519 96 6 0 chr3 13796741 13797094 -204240064 - THE1A LTR MaLR 0 355 1 236 261 161 28 chr3 13797094 13797153 -204240005 - L2 LINE L2 -324 2989 2939 2132 124 3 22 chr3 13797816 13798130 -204239028 + AluSx SINE Alu 1 308 -4 2304 122 0 0 chr3 13798269 13798572 -204238586 - AluSg SINE Alu -7 303 1 2630 65 0 0 chr3 13798581 13798890 -204238268 - AluY SINE Alu -2 309 1 740 242 11 78 chr3 13799625 13799894 -204237264 - L1MA7 LINE L1 -148 6143 5893 438 274 0 0 chr3 13799892 13800005 -204237153 + L1MA7 LINE L1 6173 6285 -6 * 1107 267 44 0 chr3 13801187 13801528 -204235630 - L1M4b LINE L1 -5910 949 594 469 71 43 0 chr3 13801529 13801599 -204235559 + LTR5 LTR ERVK 1 73 -896 6498 82 11 2 chr3 13801599 13802447 -204234711 + LTR5 LTR ERVK 115 969 0 21056 62 2 3 chr3 13802447 13805165 -204231993 + HERVK LTR ERVK 1 2715 -4528 17519 43 2 1 chr3 13805143 13807339 -204229819 + HERVK LTR ERVK 4951 7147 -96 * 417 95 11 168 chr3 13807342 13807437 -204229721 + SVA Other Other 857 936 -450 7664 59 7 21 chr3 13807437 13808420 -204228738 + LTR5 LTR ERVK 1 969 0 259 234 0 0 chr3 13808480 13808544 -204228614 - Charlie5 DNA MER1_type -80 2532 2469 1863 173 29 0 chr3 13808579 13808921 -204228237 - MLT1A1 LTR MaLR -1 364 13 1924 154 0 0 chr3 13809108 13809407 -204227751 + AluSx SINE Alu 1 299 -13 189 0 0 0 chr3 13809472 13809493 -204227665 + (GCCTG)n Simple_repeat Simple_repeat 5 25 0 2101 122 0 7 chr3 13809981 13810284 -204226874 + AluSx SINE Alu 1 301 -11 366 136 0 61 chr3 13810307 13810373 -204226785 + AluJb SINE Alu 21 82 -220 25 31 0 0 chr3 13810373 13810405 -204226753 + AT_rich Low_complexity Low_complexity 1 32 0 1281 142 40 36 chr3 13810410 13810635 -204226523 + AluJb SINE Alu 64 289 -23 2055 96 13 20 chr3 13810644 13810947 -204226211 + AluSx SINE Alu 1 301 -11 2023 32 4 4 chr3 13811170 13811417 -204225741 - AluY SINE Alu -1 310 64 2241 148 56 30 chr3 13811418 13811850 -204225308 - LTR8A LTR ERV1 -284 443 1 209 275 100 12 chr3 13812292 13812372 -204224786 + MIR3 SINE MIR 105 191 -17 180 333 17 0 chr3 13812697 13812757 -204224401 + MIR SINE MIR 50 110 -152 2009 98 0 4 chr3 13812894 13813171 -204223987 + AluSx SINE Alu 5 280 -32 207 0 0 0 chr3 13813171 13813194 -204223964 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 278 313 125 10 chr3 13813213 13813309 -204223849 + MIR SINE MIR 21 127 -135 611 284 169 31 chr3 13813318 13813709 -204223449 - L2 LINE L2 0 3313 2869 807 148 31 0 chr3 13814314 13814442 -204222716 + FLAM_C SINE Alu 2 133 0 1255 209 23 36 chr3 13814450 13814581 -204222577 + AluJo SINE Alu 7 138 -174 189 0 0 0 chr3 13814581 13814602 -204222556 + (CA)n Simple_repeat Simple_repeat 2 22 0 1255 209 23 36 chr3 13814602 13814771 -204222387 + AluJo SINE Alu 138 303 -9 208 233 50 17 chr3 13814771 13814831 -204222327 + MIR SINE MIR 105 166 -96 1750 117 4 4 chr3 13815939 13816195 -204220963 + AluSg SINE Alu 38 293 -17 2134 112 0 0 chr3 13816204 13816499 -204220659 + AluSx SINE Alu 1 295 -17 267 320 40 24 chr3 13816710 13816835 -204220323 - MLT1K LTR MaLR -393 195 69 411 287 16 42 chr3 13817139 13817316 -204219842 + MIR3 SINE MIR 28 201 -7 815 213 109 10 chr3 13817362 13817702 -204219456 - MLT1J2 LTR MaLR -19 427 1 452 281 134 6 chr3 13818106 13818270 -204218888 + MIR SINE MIR 19 203 -59 621 106 0 0 chr3 13818301 13818386 -204218772 + AluSg1 SINE Alu 21 105 -204 2328 97 0 0 chr3 13818419 13818730 -204218428 + AluSx SINE Alu 1 311 -1 2039 113 10 3 chr3 13818793 13819085 -204218073 + AluSx SINE Alu 1 294 -18 772 185 51 6 chr3 13820121 13820278 -204216880 + MIR SINE MIR 21 184 -78 1705 158 3 14 chr3 13820330 13820622 -204216536 - AluJo SINE Alu -16 296 8 2203 103 0 0 chr3 13820639 13820939 -204216219 - AluY SINE Alu -11 300 1 977 166 16 21 chr3 13821369 13821547 -204215611 - AluJb SINE Alu -1 311 133 2271 101 7 0 chr3 13821547 13821854 -204215304 - AluSg SINE Alu -1 309 1 977 166 16 21 chr3 13821854 13821868 -204215290 - AluJb SINE Alu -179 133 120 21 0 0 0 chr3 13821991 13822012 -204215146 + AT_rich Low_complexity Low_complexity 1 21 0 2327 91 3 0 chr3 13822134 13822442 -204214716 - AluSc SINE Alu 0 309 1 251 257 0 43 chr3 13822569 13822639 -204214519 + L2 LINE L2 3206 3272 0 297 271 0 0 chr3 13822643 13822713 -204214445 + L2 LINE L2 3203 3272 0 304 268 0 0 chr3 13822716 13822787 -204214371 + L2 LINE L2 3201 3271 -1 2199 116 0 0 chr3 13822800 13823101 -204214057 + AluSg SINE Alu 3 303 -7 198 286 0 32 chr3 13823116 13823179 -204213979 + L2 LINE L2 3205 3265 -7 2127 109 0 26 chr3 13823179 13823483 -204213675 + AluSx SINE Alu 1 296 -16 579 213 51 56 chr3 13824274 13824471 -204212687 + MIR SINE MIR 67 262 0 2203 64 0 58 chr3 13824553 13824866 -204212292 + AluY SINE Alu 1 295 -16 473 245 198 40 chr3 13824866 13825119 -204212039 - L2 LINE L2 -1 3312 3020 2216 90 0 3 chr3 13827003 13827303 -204209855 - AluSg1 SINE Alu -10 299 1 447 243 125 7 chr3 13827505 13827641 -204209517 - MIR SINE MIR -22 240 89 225 0 0 0 chr3 13827720 13827745 -204209413 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2120 71 0 14 chr3 13827748 13828028 -204209130 - AluY SINE Alu -35 276 1 453 307 39 20 chr3 13830141 13830294 -204206864 + MIR SINE MIR 8 163 -99 1576 271 175 17 chr3 13830541 13831446 -204205712 - L2 LINE L2 -68 3245 2196 365 196 0 72 chr3 13831624 13831721 -204205437 + MIR SINE MIR 103 192 -70 302 279 19 19 chr3 13831750 13831854 -204205304 + MIR3 SINE MIR 83 186 -22 224 218 55 0 chr3 13831886 13831941 -204205217 - L2 LINE L2 -29 3243 3186 337 237 0 41 chr3 13831960 13832071 -204205087 + L1MC4 LINE L1 1996 6983 -1339 3245 171 72 14 chr3 13832075 13832766 -204204392 - L1MB5 LINE L1 -9 6165 5435 458 212 145 45 chr3 13832767 13832946 -204204212 - MIR SINE MIR -57 205 9 265 248 106 44 chr3 13833287 13833400 -204203758 + MIR3 SINE MIR 54 173 -35 327 274 47 9 chr3 13833646 13833752 -204203406 + MIR SINE MIR 44 153 -55 2313 74 0 3 chr3 13834076 13834375 -204202783 + AluY SINE Alu 1 298 -13 1304 148 92 8 chr3 13834384 13834634 -204202524 + AluJo SINE Alu 10 280 -32 423 0 0 0 chr3 13834639 13834686 -204202472 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 356 271 75 28 chr3 13834696 13834803 -204202355 + L1ME4a LINE L1 5738 5849 -272 11187 45 6 11 chr3 13834830 13836223 -204200935 - SVA Other Other 0 1386 1 298 98 16 33 chr3 13836224 13836285 -204200873 + (GGGAGA)n Simple_repeat Simple_repeat 1 60 0 269 323 4 134 chr3 13836781 13837007 -204200151 - L2 LINE L2 -76 3196 3005 2505 62 0 0 chr3 13837007 13837315 -204199843 + AluY SINE Alu 1 308 -3 269 323 4 134 chr3 13837315 13837342 -204199816 - L2 LINE L2 -267 3005 2976 204 139 13 177 chr3 13837326 13837405 -204199753 + MIR3 SINE MIR 10 75 -133 * 816 236 26 141 chr3 13837405 13837481 -204199677 - MLT1J LTR MaLR 0 495 412 2127 105 0 20 chr3 13837481 13837787 -204199371 + AluSq SINE Alu 1 300 -13 816 236 26 141 chr3 13837787 13838214 -204198944 - MLT1J LTR MaLR -83 412 1 722 327 9 0 chr3 13839362 13839573 -204197585 - MIR SINE MIR -12 250 38 319 237 46 76 chr3 13839603 13839734 -204197424 + MIR SINE MIR 64 190 -72 345 309 103 25 chr3 13840661 13840888 -204196270 + MIR SINE MIR 16 262 0 2062 74 19 32 chr3 13841320 13841632 -204195526 - AluSg SINE Alu -2 308 1 371 277 234 0 chr3 13843570 13843707 -204193451 + MIR SINE MIR 94 262 0 188 256 0 0 chr3 13843740 13843783 -204193375 + MER5B DNA MER1_type 1 43 -135 988 163 28 0 chr3 13843826 13844004 -204193154 - AluJb SINE Alu -10 302 120 183 358 0 0 chr3 13844022 13844089 -204193069 - MIR SINE MIR -65 143 77 263 280 47 19 chr3 13845776 13845883 -204191275 + L2 LINE L2 2697 2806 -508 2183 110 0 0 chr3 13846009 13846299 -204190859 - AluSx SINE Alu -22 290 1 395 234 140 9 chr3 13846380 13846487 -204190671 + MIR SINE MIR 46 166 -96 183 292 14 14 chr3 13847025 13847097 -204190061 - L2 LINE L2 -1 3271 3200 330 213 32 32 chr3 13847263 13847357 -204189801 - MIR SINE MIR -119 143 50 243 61 0 0 chr3 13847640 13847673 -204189485 + (TCC)n Simple_repeat Simple_repeat 2 34 0 413 225 158 0 chr3 13848028 13848148 -204189010 - L3 LINE CR1 -16 1561 1423 374 293 61 59 chr3 13848182 13848265 -204188893 - L1ME4a LINE L1 -124 5997 5916 2009 69 87 0 chr3 13848265 13848540 -204188618 - AluSx SINE Alu -13 299 1 374 293 61 59 chr3 13848540 13848871 -204188287 - L1ME4a LINE L1 -205 5916 5576 1199 169 31 63 chr3 13848985 13849239 -204187919 + AluJb SINE Alu 1 246 -66 309 86 69 0 chr3 13849306 13849389 -204187769 + AluJb SINE Alu 241 327 0 1615 149 3 57 chr3 13849405 13849721 -204187437 + AluJo SINE Alu 13 311 -1 701 301 187 17 chr3 13849935 13850417 -204186741 - L3 LINE CR1 -291 1286 723 463 301 165 0 chr3 13851035 13851241 -204185917 - MIR SINE MIR -3 259 20 1018 114 0 0 chr3 13851262 13851394 -204185764 - AluSq/x SINE Alu -181 132 1 2192 124 0 0 chr3 13851940 13852239 -204184919 - AluSx SINE Alu -13 299 1 340 224 52 100 chr3 13852289 13852499 -204184659 - HAL1 LINE L1 -72 2435 2236 522 236 58 37 chr3 13852520 13852711 -204184447 - HAL1 LINE L1 -335 2172 1978 551 267 48 40 chr3 13852775 13853127 -204184031 + L1MC5 LINE L1 7428 7782 -179 2390 91 0 0 chr3 13853189 13853486 -204183672 + AluSx SINE Alu 1 297 -15 1681 165 21 18 chr3 13853531 13853816 -204183342 - AluJb SINE Alu -26 286 1 1820 154 14 11 chr3 13853826 13854112 -204183046 - AluJo SINE Alu -25 287 1 754 156 117 7 chr3 13854112 13854266 -204182892 - L1MB8 LINE L1 -347 5831 5661 1060 110 0 61 chr3 13854268 13854501 -204182657 - AluSc SINE Alu 0 309 4 2428 90 0 0 chr3 13854514 13854814 -204182344 - AluSg SINE Alu -10 300 1 636 136 18 36 chr3 13854816 13854926 -204182232 - L1MB8 LINE L1 -509 5669 5562 231 291 25 0 chr3 13854932 13855011 -204182147 - MIR SINE MIR -71 137 57 381 358 49 32 chr3 13855200 13855262 -204181896 + L2 LINE L2 2791 2850 -422 308 209 0 0 chr3 13855262 13855329 -204181829 - L1MB8 LINE L1 -9 6169 6103 381 358 49 32 chr3 13855329 13855550 -204181608 + L2 LINE L2 2850 3078 -194 1711 83 0 9 chr3 13855615 13855843 -204181315 - AluY SINE Alu -6 305 80 479 243 79 13 chr3 13856338 13856490 -204180668 + MLT1K LTR MaLR 419 580 -8 1304 107 122 0 chr3 13856683 13856888 -204180270 - MER30 DNA MER1_type 0 230 1 1773 79 0 0 chr3 13857162 13857377 -204179781 - AluSq SINE Alu -16 297 83 878 150 0 0 chr3 13857891 13858024 -204179134 + AluJo SINE Alu 1 133 -169 255 31 0 0 chr3 13858947 13858979 -204178179 + (TA)n Simple_repeat Simple_repeat 2 33 0 2261 100 0 13 chr3 13858979 13859280 -204177878 - AluSg1 SINE Alu -12 297 1 426 293 28 83 chr3 13859760 13860013 -204177145 - MIR SINE MIR -8 254 16 563 210 86 37 chr3 13860464 13860626 -204176532 + AluJo SINE Alu 140 309 -3 1620 156 0 50 chr3 13860637 13860920 -204176238 + AluJo SINE Alu 9 277 -35 341 0 45 0 chr3 13860921 13860965 -204176193 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 2924 174 77 61 chr3 13861010 13861727 -204175431 - L1MB7 LINE L1 -17 6167 5440 2409 88 0 0 chr3 13861728 13862023 -204175135 - AluSg SINE Alu -15 295 1 1858 99 3 128 chr3 13862032 13862376 -204174782 - AluSg1 SINE Alu -8 301 1 1030 214 37 7 chr3 13862386 13862657 -204174501 - L1MB4 LINE L1 0 6180 5902 750 186 164 0 chr3 13862684 13862824 -204174334 - FRAM SINE Alu -19 157 1 4247 192 71 38 chr3 13862864 13863430 -204173728 - L1MB4 LINE L1 -1144 5002 4456 2274 106 0 0 chr3 13863430 13863722 -204173436 - AluSc SINE Alu -17 292 1 4247 192 71 38 chr3 13863722 13864146 -204173012 - L1MB4 LINE L1 -1690 4456 3974 2099 132 0 10 chr3 13864146 13864314 -204172844 - AluSx SINE Alu -11 301 136 2215 105 10 29 chr3 13864314 13864627 -204172531 - AluSq SINE Alu -6 307 1 2099 132 0 10 chr3 13864627 13864762 -204172396 - AluSx SINE Alu -176 136 1 4247 192 71 38 chr3 13864762 13864814 -204172344 - L1MB4 LINE L1 -2172 3974 3925 264 240 184 22 chr3 13865390 13865493 -204171665 + MIR SINE MIR 44 157 -94 498 278 57 44 chr3 13865541 13865768 -204171390 - MIR SINE MIR 0 262 33 2328 94 0 0 chr3 13866430 13866716 -204170442 - AluSx SINE Alu -17 295 10 198 0 0 0 chr3 13867965 13867987 -204169171 + (A)n Simple_repeat Simple_repeat 1 22 0 2061 115 20 10 chr3 13867991 13868287 -204168871 + AluSx SINE Alu 1 299 -13 2362 76 14 0 chr3 13868335 13868626 -204168532 - AluY SINE Alu -16 295 1 211 0 28 56 chr3 13868678 13868714 -204168444 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2334 68 0 0 chr3 13868716 13868996 -204168162 - AluY SINE Alu -31 280 1 632 137 0 0 chr3 13868998 13869093 -204168065 - AluJo/FLAM SINE Alu -183 129 35 2462 62 0 0 chr3 13870070 13870359 -204166799 - AluY SINE Alu -21 290 2 2399 98 0 13 chr3 13870360 13870667 -204166491 - AluSx SINE Alu -9 303 1 701 263 106 59 chr3 13870668 13871033 -204166125 - L1ME LINE L1 -297 5824 5435 2412 82 0 3 chr3 13871033 13871339 -204165819 + AluY SINE Alu 1 305 -6 701 263 106 59 chr3 13871339 13871399 -204165759 - L1ME LINE L1 -686 5435 5379 2056 129 7 13 chr3 13871608 13871911 -204165247 - AluSx SINE Alu -11 301 1 1650 150 6 72 chr3 13873531 13873851 -204163307 + AluJo SINE Alu 1 299 -13 2134 100 25 4 chr3 13874050 13874331 -204162827 + AluSg SINE Alu 1 287 -23 197 33 33 0 chr3 13874338 13874368 -204162790 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 318 130 0 0 chr3 13874721 13874775 -204162383 + MER5C DNA MER1_type 71 124 -200 432 115 0 73 chr3 13874805 13874901 -204162257 + MER5C DNA MER1_type 236 324 0 482 285 22 0 chr3 13874902 13875039 -204162119 + MIR SINE MIR 4 143 -119 208 248 183 29 chr3 13875046 13875183 -204161975 - L2 LINE L2 0 3313 3156 2261 120 0 0 chr3 13875515 13875814 -204161344 - AluSx SINE Alu -13 299 1 1865 148 0 69 chr3 13875869 13876187 -204160971 - AluJb SINE Alu -16 296 1 239 281 91 16 chr3 13876276 13876397 -204160761 + L2 LINE L2 3160 3289 -24 1609 119 9 133 chr3 13876412 13876757 -204160401 + AluJo SINE Alu 1 302 -10 207 0 0 0 chr3 13877089 13877112 -204160046 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 824 164 0 0 chr3 13877112 13877234 -204159924 - AluJb SINE Alu -190 122 1 2120 107 3 17 chr3 13877449 13877747 -204159411 - AluSx SINE Alu -16 296 3 2106 109 3 7 chr3 13877759 13878053 -204159105 - AluSg SINE Alu -17 293 1 1766 173 10 7 chr3 13878114 13878409 -204158749 + AluJb SINE Alu 10 305 -7 1922 164 0 0 chr3 13878649 13878947 -204158211 - AluSx SINE Alu -14 298 1 1214 129 16 5 chr3 13878996 13879182 -204157976 + AluSg/x SINE Alu 107 294 -18 188 305 142 21 chr3 13879351 13879492 -204157666 + MIR SINE MIR 35 192 -70 2518 67 0 10 chr3 13879580 13879879 -204157279 - AluSc SINE Alu -13 296 1 2397 80 0 7 chr3 13879890 13880190 -204156968 - AluY SINE Alu -13 298 1 314 265 120 8 chr3 13880405 13880522 -204156636 + MIR SINE MIR 117 246 -16 1162 228 100 6 chr3 13880567 13880927 -204156231 + MER113 DNA MER1_type? 2 395 -126 456 139 163 0 chr3 13880932 13881018 -204156140 - FLAM_A SINE Alu -15 127 28 2161 99 7 0 chr3 13881113 13881429 -204155729 + AluSq SINE Alu 1 318 0 458 292 109 10 chr3 13881745 13881937 -204155221 - MIR SINE MIR -14 248 38 2375 69 7 3 chr3 13882435 13882741 -204154417 + AluY SINE Alu 3 309 -2 372 88 0 27 chr3 13884768 13884983 -204152175 + AluSx SINE Alu 1 293 -8 24 0 0 0 chr3 13885258 13885282 -204151876 + AT_rich Low_complexity Low_complexity 1 24 0 224 241 0 0 chr3 13885424 13885478 -204151680 + T-rich Low_complexity Low_complexity 1 54 0 254 105 53 0 chr3 13885478 13885516 -204151642 - LTR23 LTR ERV1 -78 359 320 2293 91 24 0 chr3 13885521 13885819 -204151339 - AluYb8 SINE Alu -13 305 1 1067 184 46 9 chr3 13885820 13886005 -204151153 - AluJo SINE Alu 0 312 116 180 0 0 0 chr3 13886005 13886025 -204151133 + (TTAG)n Simple_repeat Simple_repeat 2 21 0 1067 184 46 9 chr3 13886025 13886057 -204151101 - AluJo SINE Alu -196 116 87 357 194 0 0 chr3 13886059 13886121 -204151037 - AluSc SINE Alu -51 248 187 254 105 53 0 chr3 13886147 13886185 -204150973 - LTR23 LTR ERV1 -78 359 320 2293 91 24 0 chr3 13886190 13886488 -204150670 - AluYb8 SINE Alu -13 305 1 1745 176 0 52 chr3 13886489 13886674 -204150484 - AluJo SINE Alu 0 312 119 180 0 0 0 chr3 13886674 13886694 -204150464 + (TTAG)n Simple_repeat Simple_repeat 2 21 0 1998 115 14 14 chr3 13886694 13886981 -204150177 - AluSq SINE Alu -26 287 1 2442 46 7 0 chr3 13886987 13887296 -204149862 - AluY SINE Alu 0 311 1 1745 176 0 52 chr3 13887296 13887430 -204149728 - AluJo SINE Alu -197 115 1 805 153 21 7 chr3 13887703 13887847 -204149311 - FRAM SINE Alu -30 146 1 2063 133 42 21 chr3 13887928 13888258 -204148900 - MER1B DNA MER1_type 0 337 1 1925 131 0 55 chr3 13888265 13888594 -204148564 - AluSx SINE Alu -1 311 1 420 310 80 9 chr3 13889197 13889410 -204147748 - L3 LINE CR1 -726 851 624 2221 112 0 3 chr3 13890744 13891040 -204146118 - AluSq SINE Alu -18 295 1 1175 133 0 6 chr3 13891817 13891990 -204145168 - AluSg/x SINE Alu -24 288 117 206 191 85 0 chr3 13892104 13892151 -204145007 - L2 LINE L2 -1 3271 3221 1896 139 0 20 chr3 13892352 13892647 -204144511 + AluJb SINE Alu 23 311 -1 24 0 0 0 chr3 13892794 13892818 -204144340 + AT_rich Low_complexity Low_complexity 1 24 0 1518 161 38 3 chr3 13893100 13893391 -204143767 - L1MB4 LINE L1 -21 6159 5859 1015 83 0 0 chr3 13893406 13893538 -204143620 - AluY SINE Alu -179 132 1 1941 154 39 23 chr3 13893538 13893616 -204143542 - L1MB4 LINE L1 -308 5872 5797 2097 113 0 0 chr3 13893616 13893928 -204143230 - AluSx SINE Alu 0 312 1 1941 154 39 23 chr3 13893928 13894237 -204142921 - L1MB4 LINE L1 -383 5797 5478 2367 71 0 0 chr3 13894251 13894575 -204142583 + AluY SINE Alu 1 324 0 935 171 0 6 chr3 13894602 13894760 -204142398 - FRAM SINE Alu -19 157 1 1127 157 48 56 chr3 13894764 13894919 -204142239 - L1MB4 LINE L1 -699 5481 5326 1525 229 0 3 chr3 13894919 13895224 -204141934 - AluJb SINE Alu -8 304 1 1127 157 48 56 chr3 13895224 13895405 -204141753 - L1MB4 LINE L1 -854 5326 5148 2113 133 3 0 chr3 13895405 13895705 -204141453 - AluSc SINE Alu -8 301 1 1127 157 48 56 chr3 13895705 13895748 -204141410 - L1MB4 LINE L1 -1032 5148 5106 2190 94 10 29 chr3 13896198 13896506 -204140652 - AluSx SINE Alu -10 302 1 2284 187 77 66 chr3 13897186 13897446 -204139712 - L1MB4 LINE L1 -1015 5131 4875 2377 62 0 55 chr3 13897446 13897755 -204139403 + AluY SINE Alu 1 292 -19 2284 187 77 66 chr3 13897755 13897882 -204139276 - L1MB4 LINE L1 -1271 4875 4751 2215 103 0 7 chr3 13897882 13898172 -204138986 + AluY SINE Alu 1 288 -23 2284 187 77 66 chr3 13898172 13898436 -204138722 - L1MB4 LINE L1 -1395 4751 4472 1707 188 11 0 chr3 13898437 13898752 -204138406 - AluJb SINE Alu 0 312 1 259 182 15 30 chr3 13899615 13899681 -204137477 + AluS SINE Alu 5 69 -234 224 30 30 0 chr3 13899805 13899838 -204137320 + (TTTTTG)n Simple_repeat Simple_repeat 1 34 0 240 143 0 0 chr3 13899866 13899908 -204137250 + (GGGAGA)n Simple_repeat Simple_repeat 1 42 0 181 425 0 0 chr3 13900410 13900490 -204136668 - L2 LINE L2 -82 3190 3111 227 223 11 106 chr3 13900564 13900630 -204136528 - L2 LINE L2 -212 3060 3004 2622 62 0 0 chr3 13900630 13900938 -204136220 + AluY SINE Alu 1 308 -3 227 223 11 106 chr3 13900938 13900965 -204136193 - L2 LINE L2 -268 3004 2976 190 139 13 177 chr3 13900949 13901028 -204136130 + MIR3 SINE MIR 10 75 -133 * 2031 105 4 10 chr3 13901104 13901392 -204135766 + AluSx SINE Alu 1 283 -29 316 0 0 0 chr3 13901392 13901427 -204135731 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 25 0 0 0 chr3 13901482 13901507 -204135651 + AT_rich Low_complexity Low_complexity 1 25 0 1099 137 137 19 chr3 13901803 13901964 -204135194 - MER46A DNA MER2_type -2495 236 43 2187 138 0 0 chr3 13901964 13902261 -204134897 - AluSx SINE Alu -15 297 1 1099 137 137 19 chr3 13902261 13902310 -204134848 - MER46A DNA MER2_type -2688 43 1 498 290 134 28 chr3 13902320 13902537 -204134621 - MIR SINE MIR -3 259 20 2197 116 0 0 chr3 13902951 13903243 -204133915 - AluSq SINE Alu -21 292 1 617 247 19 6 chr3 13903243 13903405 -204133753 + MER113 DNA MER1_type? 189 352 -169 2553 93 0 0 chr3 13903447 13903759 -204133399 + AluSx SINE Alu 1 312 0 2467 83 3 10 chr3 13904477 13904789 -204132369 + AluSg SINE Alu 1 310 0 2645 44 0 0 chr3 13904897 13905193 -204131965 - AluY SINE Alu -15 296 1 1774 89 46 19 chr3 13905193 13905452 -204131706 - AluSq SINE Alu -13 300 35 2086 50 0 0 chr3 13905463 13905701 -204131457 - AluY SINE Alu -73 238 1 538 314 115 24 chr3 13905764 13906095 -204131063 - L3 LINE CR1 -72 1505 1145 574 264 120 37 chr3 13907367 13907583 -204129575 + MIR SINE MIR 9 242 -20 436 303 86 0 chr3 13907754 13907916 -204129242 - MIR SINE MIR -56 206 31 385 307 54 31 chr3 13907942 13908222 -204128936 - MER102b DNA MER1_type 0 341 1 207 69 0 0 chr3 13909027 13909056 -204128102 + (T)n Simple_repeat Simple_repeat 1 29 0 247 301 97 44 chr3 13909864 13909977 -204127181 - MIR3 SINE MIR -24 184 66 578 193 38 80 chr3 13909988 13910200 -204126958 - MER3 DNA MER1_type -5 204 2 326 282 113 8 chr3 13910234 13910358 -204126800 + MIR SINE MIR 41 177 -85 1960 141 10 13 chr3 13910717 13911023 -204126135 + AluSq SINE Alu 1 305 -8 1953 84 95 7 chr3 13911033 13911318 -204125840 + AluSx SINE Alu 2 311 -1 389 273 72 21 chr3 13911355 13911922 -204125236 + L1MC4 LINE L1 7098 7629 -413 2247 93 3 0 chr3 13912003 13912293 -204124865 + AluY SINE Alu 1 291 -20 258 287 25 82 chr3 13912296 13912418 -204124740 + MER5B DNA MER1_type 35 149 -29 753 177 87 113 chr3 13912896 13912961 -204124197 - MIR SINE MIR 0 262 197 2382 95 0 0 chr3 13912961 13913256 -204123902 + AluSx SINE Alu 1 295 -17 753 177 87 113 chr3 13913256 13913455 -204123703 - MIR SINE MIR -65 197 5 453 238 165 61 chr3 13913478 13913642 -204123516 - MIR SINE MIR -60 202 22 433 259 122 27 chr3 13914432 13914579 -204122579 + MIR SINE MIR 6 166 -96 232 275 125 0 chr3 13914627 13914707 -204122451 + MIR SINE MIR 169 258 -4 360 308 19 0 chr3 13914715 13914822 -204122336 - MIR SINE MIR -108 154 46 2379 102 0 0 chr3 13914941 13915244 -204121914 - AluSx SINE Alu -9 303 1 610 234 48 30 chr3 13915247 13915414 -204121744 + L2 LINE L2 3135 3304 -9 1591 155 26 37 chr3 13915428 13915699 -204121459 + AluJb SINE Alu 24 291 -21 2311 97 24 0 chr3 13916355 13916653 -204120505 - AluSx SINE Alu -7 305 1 758 238 48 29 chr3 13916898 13917104 -204120054 - MIR SINE MIR -51 211 2 343 202 27 209 chr3 13917635 13917749 -204119409 - MIR SINE MIR -17 245 112 1723 165 53 3 chr3 13917749 13918034 -204119124 - AluJo SINE Alu -13 299 1 343 202 27 209 chr3 13918034 13918063 -204119095 - MIR SINE MIR -150 112 79 2506 90 0 0 chr3 13918063 13918375 -204118783 + AluSx SINE Alu 1 312 0 343 202 27 209 chr3 13918375 13918395 -204118763 - MIR SINE MIR -183 79 57 2177 124 0 3 chr3 13918395 13918694 -204118464 + AluSc SINE Alu 1 298 -11 343 202 27 209 chr3 13918694 13918786 -204118372 - MIR SINE MIR -205 57 35 574 254 101 32 chr3 13918876 13919093 -204118065 + L2 LINE L2 3081 3312 -1 189 0 0 0 chr3 13919680 13919701 -204117457 + (A)n Simple_repeat Simple_repeat 1 21 0 2491 58 7 3 chr3 13919708 13920002 -204117156 - AluY SINE Alu -16 295 1 1073 92 0 0 chr3 13920004 13920135 -204117023 - AluSg SINE Alu -174 136 6 5605 164 17 4 chr3 13920376 13922026 -204115132 - L1PB1 LINE L1 -7 6144 4477 1111 122 0 0 chr3 13922029 13922185 -204114973 - AluSg/x SINE Alu 0 312 157 427 153 0 0 chr3 13922191 13922250 -204114908 - AluS SINE Alu -256 62 4 2298 106 0 3 chr3 13922263 13922564 -204114594 - AluSg SINE Alu -10 300 1 598 136 18 36 chr3 13922566 13922676 -204114482 - L1M4 LINE L1 -509 5669 5562 305 333 54 0 chr3 13922682 13922811 -204114347 - MIR3 SINE MIR -71 137 2 296 232 0 12 chr3 13923012 13923094 -204114064 - L1MB8 LINE L1 -9 6169 6089 438 322 181 43 chr3 13923096 13923365 -204113793 + L2 LINE L2 2868 3195 -77 1731 83 0 9 chr3 13923365 13923593 -204113565 - AluY SINE Alu -6 305 80 438 322 181 43 chr3 13923593 13923678 -204113480 + L2 LINE L2 3195 3267 -5 444 243 79 13 chr3 13924088 13924240 -204112918 + MLT1K LTR MaLR 419 580 -8 1316 107 122 0 chr3 13924433 13924638 -204112520 - MER30 DNA MER1_type 0 230 1 1789 79 0 0 chr3 13924912 13925127 -204112031 - AluSq SINE Alu -16 297 83 188 240 0 20 chr3 13925346 13925396 -204111762 + L2 LINE L2 2931 2979 -334 899 150 0 0 chr3 13925641 13925774 -204111384 + AluJo SINE Alu 1 133 -169 219 36 0 0 chr3 13926699 13926727 -204110431 + (TA)n Simple_repeat Simple_repeat 2 29 0 2245 101 0 14 chr3 13926727 13927024 -204110134 - AluSg1 SINE Alu -16 293 1 534 293 28 83 chr3 13927504 13927757 -204109401 - MIR SINE MIR -8 254 16 584 254 67 6 chr3 13928206 13928371 -204108787 + AluJo SINE Alu 137 311 -1 1645 156 0 50 chr3 13928382 13928665 -204108493 + AluJo SINE Alu 9 277 -35 486 0 0 0 chr3 13928666 13928720 -204108438 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 2697 179 74 59 chr3 13928765 13929482 -204107676 - L1MB7 LINE L1 -17 6167 5440 2425 88 0 0 chr3 13929483 13929778 -204107380 - AluSg SINE Alu -15 295 1 1927 87 3 130 chr3 13929787 13930132 -204107026 - AluSg1 SINE Alu -8 301 1 396 256 234 0 chr3 13932072 13932209 -204104949 + MIR SINE MIR 94 262 0 184 283 57 0 chr3 13932242 13932295 -204104863 - MER5B DNA MER1_type 0 178 123 502 232 10 0 chr3 13932685 13932784 -204104374 + FLAM_A SINE Alu 1 100 -42 27 0 0 0 chr3 13932819 13932846 -204104312 + AT_rich Low_complexity Low_complexity 1 27 0 1645 156 0 50 chr3 13932857 13933140 -204104018 + AluJo SINE Alu 9 277 -35 414 0 0 0 chr3 13933141 13933187 -204103971 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 2697 179 74 59 chr3 13933232 13933949 -204103209 - L1MB7 LINE L1 -17 6167 5440 2371 95 0 0 chr3 13933951 13934245 -204102913 - AluSg SINE Alu -16 294 1 564 96 0 36 chr3 13934269 13934352 -204102806 - AluSg/x SINE Alu -23 289 210 1855 118 8 0 chr3 13934352 13934598 -204102560 - AluSx SINE Alu -64 248 1 959 214 37 7 chr3 13934608 13934879 -204102279 - L1MB4 LINE L1 0 6180 5902 778 186 164 0 chr3 13934906 13935046 -204102112 - FRAM SINE Alu -19 157 1 4002 197 71 38 chr3 13935086 13935652 -204101506 - L1MB4 LINE L1 -1144 5002 4456 2292 106 0 0 chr3 13935652 13935944 -204101214 - AluSc SINE Alu -17 292 1 4002 197 71 38 chr3 13935944 13936368 -204100790 - L1MB4 LINE L1 -1690 4456 3974 2126 132 0 10 chr3 13936368 13936536 -204100622 - AluSx SINE Alu -11 301 136 2242 105 10 29 chr3 13936536 13936849 -204100309 - AluSq SINE Alu -6 307 1 2126 132 0 10 chr3 13936849 13936984 -204100174 - AluSx SINE Alu -176 136 1 4002 197 71 38 chr3 13936984 13937036 -204100122 - L1MB4 LINE L1 -2172 3974 3925 302 313 188 0 chr3 13937603 13937715 -204099443 + MIR SINE MIR 25 157 -105 587 278 57 44 chr3 13937763 13937990 -204099168 - MIR SINE MIR 0 262 33 2346 94 0 0 chr3 13938652 13938938 -204098220 - AluSx SINE Alu -17 295 10 198 0 0 0 chr3 13940187 13940209 -204096949 + (A)n Simple_repeat Simple_repeat 1 22 0 1406 150 5 0 chr3 13940213 13940426 -204096732 + AluSx SINE Alu 1 214 -98 2498 59 0 0 chr3 13940492 13940781 -204096377 + AluY SINE Alu 2 290 -21 648 137 0 0 chr3 13941758 13941853 -204095305 + AluJo/FLAM SINE Alu 35 129 -183 2336 68 0 0 chr3 13941855 13942173 -204094985 + AluY SINE Alu 1 318 0 352 266 13 0 chr3 13942633 13942712 -204094446 - MER5A DNA MER1_type -92 97 18 206 196 0 71 chr3 13942757 13942813 -204094345 + MIR SINE MIR 102 153 -55 486 332 67 5 chr3 13942880 13943073 -204094085 + MIR SINE MIR 20 224 -38 495 223 192 8 chr3 13943108 13943238 -204093920 + MER5A DNA MER1_type 30 183 -6 757 187 9 98 chr3 13943901 13944024 -204093134 + MER3 DNA MER1_type 7 105 -104 2113 85 22 63 chr3 13944024 13944340 -204092818 - AluSq SINE Alu -9 304 2 757 187 9 98 chr3 13944340 13944430 -204092728 + MER3 DNA MER1_type 105 201 -8 189 295 70 78 chr3 13944516 13944645 -204092513 + L2 LINE L2 2933 3060 -212 457 272 103 11 chr3 13945323 13945507 -204091651 + MIR SINE MIR 7 207 -55 1039 171 114 100 chr3 13945507 13945788 -204091370 + AluJo SINE Alu 5 289 -13 339 92 69 0 chr3 13945788 13945875 -204091283 + (TA)n Simple_repeat Simple_repeat 1 93 0 1191 162 0 0 chr3 13945878 13946051 -204091107 + AluSg/x SINE Alu 125 297 -13 2429 88 0 13 chr3 13946209 13946517 -204090641 + AluSg1 SINE Alu 1 304 -5 1192 228 91 47 chr3 13947139 13947569 -204089589 + L2 LINE L2 2845 3293 -20 192 164 0 49 chr3 13947591 13947652 -204089506 + GA-rich Low_complexity Low_complexity 1 58 0 566 290 65 9 chr3 13948256 13948470 -204088688 - MIR SINE MIR -18 244 19 236 232 29 94 chr3 13948492 13948600 -204088558 + L1ME4a LINE L1 5992 6091 -30 1931 115 38 54 chr3 13948600 13948914 -204088244 - AluSq SINE Alu -4 309 1 236 232 29 94 chr3 13948914 13948943 -204088215 + L1ME4a LINE L1 6091 6120 -1 233 266 16 0 chr3 13949038 13949102 -204088056 - MIR SINE MIR -119 143 79 1085 152 11 43 chr3 13949488 13949672 -204087486 + FAM SINE Alu 1 42 -7 2241 120 0 0 chr3 13949953 13950244 -204086914 + AluSq SINE Alu 1 291 -22 354 259 46 56 chr3 13950252 13950360 -204086798 + L2 LINE L2 3117 3223 -49 767 221 7 0 chr3 13950380 13950525 -204086633 + MIR SINE MIR 105 250 -12 2177 108 3 54 chr3 13950544 13950860 -204086298 - AluSp SINE Alu -12 301 2 2244 90 33 20 chr3 13950867 13951168 -204085990 - AluSq SINE Alu -2 311 7 754 177 8 0 chr3 13951665 13951789 -204085369 - FLAM_C SINE Alu -6 127 3 1664 168 14 50 chr3 13951799 13952025 -204085133 - L1MB7 LINE L1 -358 5826 5616 1733 180 3 26 chr3 13952025 13952330 -204084828 - AluJo SINE Alu -6 306 9 1664 168 14 50 chr3 13952330 13952466 -204084692 - L1MB7 LINE L1 -568 5616 5477 2232 116 3 3 chr3 13952478 13952781 -204084377 - AluSp SINE Alu -10 303 1 875 144 0 27 chr3 13952818 13952964 -204084194 - FLAM_C SINE Alu -1 142 1 939 154 46 36 chr3 13952989 13953033 -204084125 - L1MB7 LINE L1 -739 5435 5393 1913 174 0 3 chr3 13953033 13953326 -204083832 - AluJb SINE Alu -20 292 1 939 154 46 36 chr3 13953326 13953557 -204083601 - L1MB7 LINE L1 -781 5393 5162 2189 117 0 3 chr3 13953557 13953848 -204083310 + AluSx SINE Alu 1 290 -22 939 154 46 36 chr3 13953848 13953905 -204083253 - L1MB7 LINE L1 -1012 5162 5107 540 193 107 7 chr3 13953914 13954097 -204083061 - L1 LINE L1 -961 5185 4981 2423 52 3 43 chr3 13954181 13954486 -204082672 + AluY SINE Alu 1 293 -18 186 327 144 0 chr3 13954536 13954640 -204082518 + MIR SINE MIR 119 237 -25 1033 176 176 8 chr3 13954764 13955009 -204082149 + L1MC4 LINE L1 6725 7010 -1032 204 40 0 0 chr3 13955060 13955085 -204082073 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1712 165 18 18 chr3 13955085 13955399 -204081759 + AluJo SINE Alu 1 314 0 341 241 181 23 chr3 13955414 13955547 -204081611 + L1MC4 LINE L1 7247 7400 -642 1986 142 3 0 chr3 13955584 13955872 -204081286 - AluSx SINE Alu -23 289 1 571 206 0 30 chr3 13956268 13956399 -204080759 - FLAM_A SINE Alu -6 127 1 2009 149 3 0 chr3 13957177 13957479 -204079679 + AluSx SINE Alu 1 303 -9 2179 134 0 6 chr3 13957484 13957798 -204079360 + AluSx SINE Alu 1 312 0 340 271 143 15 chr3 13958222 13958387 -204078771 + MIR SINE MIR 10 189 -53 682 221 30 43 chr3 13958539 13958648 -204078510 + LTR37A LTR ERV1 139 248 -178 1295 191 47 85 chr3 13958648 13958967 -204078191 - AluJo SINE Alu -5 307 1 682 221 30 43 chr3 13958967 13959088 -204078070 + LTR37A LTR ERV1 248 366 -60 2118 137 10 0 chr3 13959089 13959388 -204077770 - AluSx SINE Alu -10 302 1 549 168 0 0 chr3 13960361 13960468 -204076690 - L1MB7 LINE L1 -16 6168 6062 1596 145 0 0 chr3 13960548 13960776 -204076382 - AluSc SINE Alu -81 228 1 1677 159 35 14 chr3 13960778 13961068 -204076090 - AluJb SINE Alu -16 296 1 186 43 0 0 chr3 13961231 13961254 -204075904 + (A)n Simple_repeat Simple_repeat 1 23 0 349 164 33 0 chr3 13961883 13961944 -204075214 + MER20 DNA MER1_type 3 65 -154 448 213 176 15 chr3 13961987 13962123 -204075035 + MER20 DNA MER1_type 57 214 -5 218 307 139 0 chr3 13962163 13962264 -204074894 - L2 LINE L2 0 3272 3158 2535 78 0 0 chr3 13962405 13962711 -204074447 - AluY SINE Alu -5 306 1 2214 106 0 3 chr3 13962967 13963259 -204073899 - AluSx SINE Alu -21 291 1 2194 141 0 0 chr3 13963259 13963557 -204073601 - AluSx SINE Alu -14 298 1 293 275 42 49 chr3 13963568 13963710 -204073448 + L2 LINE L2 3171 3311 -2 329 43 0 0 chr3 13963905 13963951 -204073207 + AluY SINE Alu 255 300 -1 2304 122 0 0 chr3 13964098 13964401 -204072757 - AluSg SINE Alu -7 303 1 2630 65 0 0 chr3 13964410 13964719 -204072439 - AluY SINE Alu -2 309 1 706 233 12 81 chr3 13965465 13965723 -204071435 - L1MA7 LINE L1 -159 6132 5893 432 274 0 0 chr3 13965721 13965834 -204071324 + L1MA7 LINE L1 6173 6285 -6 * 1054 267 44 0 chr3 13967016 13967357 -204069801 - L1M4b LINE L1 -5910 949 594 438 71 43 0 chr3 13967358 13967428 -204069730 + LTR5 LTR ERVK 1 73 -896 6839 82 11 2 chr3 13967428 13968276 -204068882 + LTR5 LTR ERVK 115 969 0 20502 69 2 4 chr3 13968276 13970972 -204066186 + HERVK LTR ERVK 1 2691 -4552 1218 199 8 13 chr3 13971006 13971242 -204065916 + AluJb SINE Alu 58 292 -20 312 93 0 0 chr3 13971243 13971286 -204065872 + L1MB7 LINE L1 5390 5432 -734 875 144 0 27 chr3 13971311 13971457 -204065701 + FLAM_C SINE Alu 1 142 -1 2201 122 3 3 chr3 13971494 13971797 -204065361 + AluSp SINE Alu 1 303 -10 1666 168 14 50 chr3 13971809 13971945 -204065213 + L1MB7 LINE L1 5477 5616 -568 1729 180 3 26 chr3 13971945 13972250 -204064908 + AluJo SINE Alu 9 306 -6 1666 168 14 50 chr3 13972250 13972476 -204064682 + L1MB7 LINE L1 5616 5826 -358 1476 186 4 8 chr3 13972486 13972738 -204064420 + AluJo SINE Alu 3 253 -59 581 159 0 0 chr3 13972794 13972901 -204064257 + L1MB7 LINE L1 6062 6168 -16 2118 137 10 0 chr3 13973874 13974173 -204062985 + AluSx SINE Alu 1 302 -10 682 221 30 43 chr3 13974174 13974295 -204062863 - LTR37A LTR ERV1 -60 366 248 1295 191 47 85 chr3 13974295 13974614 -204062544 + AluJo SINE Alu 1 307 -5 682 221 30 43 chr3 13974614 13974723 -204062435 - LTR37A LTR ERV1 -178 248 139 340 271 143 15 chr3 13974875 13975040 -204062118 - MIR SINE MIR -53 155 10 2179 134 0 6 chr3 13975464 13975778 -204061380 - AluSx SINE Alu 0 312 1 2009 149 3 0 chr3 13975783 13976085 -204061073 - AluSx SINE Alu -9 303 1 571 206 0 30 chr3 13976863 13976994 -204060164 + FLAM_A SINE Alu 1 127 -6 2172 125 3 0 chr3 13977390 13977687 -204059471 + AluSx SINE Alu 1 298 -14 1858 135 24 17 chr3 13977753 13978049 -204059109 + AluJo SINE Alu 1 298 -14 2266 115 0 10 chr3 13978071 13978384 -204058774 + AluSg SINE Alu 1 310 0 2569 54 0 0 chr3 13979280 13979574 -204057584 - AluY SINE Alu -17 294 1 200 265 36 48 chr3 13981230 13981313 -204055845 - L2 LINE L2 -208 3105 3024 1967 132 51 0 chr3 13982247 13982543 -204054615 + AluSx SINE Alu 1 311 -1 1094 69 0 0 chr3 13982545 13982675 -204054483 + AluY SINE Alu 3 132 -179 270 257 101 9 chr3 13983962 13984071 -204053087 - L2 LINE L2 -171 3142 3024 2325 122 6 0 chr3 13984082 13984435 -204052723 - THE1A LTR MaLR 0 355 1 2132 124 3 22 chr3 13985157 13985471 -204051687 + AluSx SINE Alu 1 308 -4 2304 122 0 0 chr3 13985611 13985914 -204051244 - AluSg SINE Alu -7 303 1 2641 62 0 0 chr3 13985923 13986232 -204050926 - AluY SINE Alu -2 309 1 1197 178 82 10 chr3 13986232 13986535 -204050623 - L1MB8 LINE L1 -211 5967 5643 228 182 0 0 chr3 13986539 13986583 -204050575 + (TA)n Simple_repeat Simple_repeat 1 44 0 623 200 0 23 chr3 13986594 13986724 -204050434 - FLAM_A SINE Alu 0 142 16 205 71 24 48 chr3 13986862 13986904 -204050254 + (TAAAAA)n Simple_repeat Simple_repeat 2 42 0 2347 101 0 3 chr3 13986961 13987267 -204049891 - AluSg SINE Alu -3 307 3 2484 86 0 3 chr3 13987269 13987573 -204049585 - AluSc SINE Alu -6 303 1 1677 159 35 14 chr3 13987575 13987865 -204049293 - AluJb SINE Alu -16 296 1 186 43 0 0 chr3 13988028 13988051 -204049107 + (A)n Simple_repeat Simple_repeat 1 23 0 349 164 33 0 chr3 13988680 13988741 -204048417 + MER20 DNA MER1_type 3 65 -154 236 207 138 58 chr3 13988784 13988871 -204048287 + MER20 DNA MER1_type 57 150 -69 191 289 156 0 chr3 13988970 13989060 -204048098 - L2 LINE L2 -11 3261 3158 2508 79 0 0 chr3 13989203 13989506 -204047652 - AluY SINE Alu -8 303 1 267 252 176 15 chr3 13989539 13989670 -204047488 + L2 LINE L2 2872 3023 -249 271 339 11 23 chr3 13990118 13990295 -204046863 + (TCCA)n Simple_repeat Simple_repeat 4 178 0 415 236 286 0 chr3 13990554 13990694 -204046464 - MER5A DNA MER1_type -6 183 4 338 240 113 53 chr3 13990696 13990785 -204046373 - MIR SINE MIR -17 245 142 2428 71 7 3 chr3 13990785 13991080 -204046078 + AluSp SINE Alu 1 296 -17 338 240 113 53 chr3 13991080 13991140 -204046018 - MIR SINE MIR -120 142 87 261 0 0 0 chr3 13992886 13992915 -204044243 + (T)n Simple_repeat Simple_repeat 1 29 0 799 267 30 13 chr3 13992921 13993153 -204044005 - MIR SINE MIR -18 244 9 372 336 0 0 chr3 13993162 13993299 -204043859 + (TCTA)n Simple_repeat Simple_repeat 4 140 0 358 320 17 22 chr3 13993275 13993453 -204043705 + (TCCA)n Simple_repeat Simple_repeat 3 179 0 * 2452 53 0 7 chr3 13993457 13993765 -204043393 - AluY SINE Alu 0 306 1 200 135 0 58 chr3 13993858 13993910 -204043248 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 309 320 27 0 chr3 13993949 13994283 -204042875 + (TCCA)n Simple_repeat Simple_repeat 1 343 0 396 292 41 10 chr3 13995247 13995395 -204041763 + MIR SINE MIR 45 193 -63 257 164 179 30 chr3 13995864 13995931 -204041227 + MIR SINE MIR 17 93 -115 687 169 12 31 chr3 13995948 13996108 -204041050 - AluY SINE Alu -91 220 64 2208 146 56 30 chr3 13996109 13996541 -204040617 - LTR8A LTR ERV1 -284 443 1 201 263 105 13 chr3 13996987 13997063 -204040095 + MIR3 SINE MIR 109 191 -17 2130 98 0 4 chr3 13997585 13997862 -204039296 + AluSx SINE Alu 5 280 -32 207 0 0 0 chr3 13997862 13997885 -204039273 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 273 313 125 10 chr3 13997904 13998000 -204039158 + MIR SINE MIR 21 127 -135 599 261 186 36 chr3 13998013 13998400 -204038758 - L2 LINE L2 0 3313 2869 758 148 31 0 chr3 13999006 13999134 -204038024 + FLAM_C SINE Alu 2 133 0 1397 203 23 36 chr3 13999142 13999273 -204037885 + AluJo SINE Alu 7 138 -174 189 0 0 0 chr3 13999273 13999294 -204037864 + (CA)n Simple_repeat Simple_repeat 2 22 0 1397 203 23 36 chr3 13999294 13999463 -204037695 + AluJo SINE Alu 138 303 -9 208 233 50 17 chr3 13999463 13999523 -204037635 + MIR SINE MIR 105 166 -96 1884 113 4 4 chr3 14000630 14000886 -204036272 + AluSg SINE Alu 38 293 -17 2267 112 0 0 chr3 14000895 14001190 -204035968 + AluSx SINE Alu 1 295 -17 402 292 15 8 chr3 14001877 14002007 -204035151 + MIR3 SINE MIR 71 201 -7 793 213 109 10 chr3 14002053 14002393 -204034765 - MLT1J2 LTR MaLR -19 427 1 471 281 134 6 chr3 14002797 14002961 -204034197 + MIR SINE MIR 19 203 -59 1927 119 8 4 chr3 14002992 14003260 -204033898 + AluJb SINE Alu 21 289 -23 358 241 181 23 chr3 14003297 14003430 -204033728 - L1MC4 LINE L1 -642 7400 7247 262 0 0 0 chr3 14003445 14003474 -204033684 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1700 165 18 18 chr3 14003474 14003759 -204033399 - AluJo SINE Alu -1 313 1 204 40 0 0 chr3 14003759 14003784 -204033374 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1013 176 176 8 chr3 14003835 14004080 -204033078 - L1MC4 LINE L1 -1032 7010 6725 199 327 144 0 chr3 14004204 14004308 -204032850 - MIR SINE MIR -25 237 119 2382 53 3 43 chr3 14004358 14004660 -204032498 - AluY SINE Alu -18 293 4 543 181 101 7 chr3 14004746 14004884 -204032274 + L1MB7 LINE L1 4981 5131 -1015 210 105 0 0 chr3 14004898 14004936 -204032222 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 936 154 46 36 chr3 14004938 14004995 -204032163 + L1MB7 LINE L1 5107 5162 -1012 2180 117 0 3 chr3 14004995 14005286 -204031872 - AluSx SINE Alu -22 290 1 936 154 46 36 chr3 14005286 14005517 -204031641 + L1MB7 LINE L1 5162 5393 -781 1905 174 0 3 chr3 14005517 14005810 -204031348 + AluJb SINE Alu 1 292 -20 936 154 46 36 chr3 14005810 14005854 -204031304 + L1MB7 LINE L1 5393 5435 -739 871 144 0 27 chr3 14005879 14006025 -204031133 + FLAM_C SINE Alu 1 142 -1 2224 116 3 3 chr3 14006062 14006365 -204030793 + AluSp SINE Alu 1 303 -10 1664 168 14 50 chr3 14006377 14006513 -204030645 + L1MB7 LINE L1 5477 5616 -568 1733 180 3 26 chr3 14006513 14006818 -204030340 + AluJo SINE Alu 9 306 -6 1664 168 14 50 chr3 14006818 14007044 -204030114 + L1MB7 LINE L1 5616 5826 -358 1473 186 4 8 chr3 14007054 14007306 -204029852 + AluJo SINE Alu 3 253 -59 607 159 0 0 chr3 14007362 14007469 -204029689 + L1MB7 LINE L1 6062 6168 -16 2113 137 10 0 chr3 14008442 14008741 -204028417 + AluSx SINE Alu 1 302 -10 665 229 30 43 chr3 14008742 14008863 -204028295 - LTR37A LTR ERV1 -60 366 248 1286 191 47 85 chr3 14008863 14009182 -204027976 + AluJo SINE Alu 1 307 -5 665 229 30 43 chr3 14009182 14009291 -204027867 - LTR37A LTR ERV1 -178 248 139 371 271 143 15 chr3 14009443 14009608 -204027550 - MIR SINE MIR -53 155 10 2178 134 0 6 chr3 14010029 14010343 -204026815 - AluSx SINE Alu 0 312 1 1998 149 3 0 chr3 14010348 14010650 -204026508 - AluSx SINE Alu -9 303 1 618 206 0 30 chr3 14011428 14011559 -204025599 + FLAM_A SINE Alu 1 127 -6 2180 124 3 0 chr3 14011955 14012254 -204024904 + AluSx SINE Alu 1 300 -12 1871 132 24 17 chr3 14012320 14012616 -204024542 + AluJo SINE Alu 1 298 -14 2434 62 7 3 chr3 14012638 14012928 -204024230 + AluY SINE Alu 1 291 -20 207 0 0 0 chr3 14012939 14012962 -204024196 + (T)n Simple_repeat Simple_repeat 1 23 0 574 254 101 32 chr3 14013547 14013764 -204023394 - L2 LINE L2 -1 3312 3081 301 228 22 54 chr3 14013854 14013946 -204023212 + MIR SINE MIR 35 123 -139 2164 127 0 3 chr3 14013946 14014245 -204022913 - AluSc SINE Alu -11 298 1 658 146 0 9 chr3 14014253 14014265 -204022893 - FLAM_C SINE Alu -169 143 132 2463 87 0 0 chr3 14014265 14014576 -204022582 - AluY SINE Alu 0 311 1 658 146 0 9 chr3 14014576 14014673 -204022485 - FLAM_C SINE Alu -180 132 35 2524 55 0 0 chr3 14015650 14015940 -204021218 - AluY SINE Alu -21 290 1 287 338 13 120 chr3 14015941 14016166 -204020992 + L2 LINE L2 2996 3196 -76 272 350 0 0 chr3 14016660 14016779 -204020379 + T-rich Low_complexity Low_complexity 1 119 0 807 143 12 42 chr3 14016883 14017051 -204020107 + AluSg/x SINE Alu 135 297 -15 321 229 12 48 chr3 14017052 14017135 -204020023 + MER5A DNA MER1_type 108 187 -2 2035 108 38 14 chr3 14017427 14017715 -204019443 - AluSx SINE Alu -4 308 14 553 301 82 21 chr3 14017743 14018138 -204019020 - L1ME LINE L1 -422 5699 5255 2293 114 3 0 chr3 14018262 14018568 -204018590 - AluSx SINE Alu -5 307 1 1539 166 3 48 chr3 14018702 14019015 -204018143 + AluJb SINE Alu 13 312 0 2370 69 0 25 chr3 14019120 14019437 -204017721 - AluY SINE Alu 0 311 3 191 237 0 0 chr3 14019666 14019704 -204017454 - MER5B DNA MER1_type -137 41 4 302 307 91 0 chr3 14019715 14019803 -204017355 + L2 LINE L2 3139 3234 -38 958 97 0 0 chr3 14019817 14019941 -204017217 + FLAM_C SINE Alu 19 142 -1 789 247 163 45 chr3 14020328 14020684 -204016474 + L2 LINE L2 2916 3313 0 427 287 114 0 chr3 14020730 14020897 -204016261 - MIR SINE MIR 0 262 77 887 193 27 16 chr3 14020905 14021092 -204016066 + MER5A DNA MER1_type 1 189 0 528 89 129 20 chr3 14021120 14021221 -204015937 - L1MB7 LINE L1 0 6184 6073 192 77 0 0 chr3 14021245 14021271 -204015887 + (A)n Simple_repeat Simple_repeat 1 26 0 1815 63 0 9 chr3 14021274 14021496 -204015662 + AluSq SINE Alu 1 220 -93 741 92 0 23 chr3 14021497 14021649 -204015509 + AluSg/x SINE Alu 118 310 0 1221 30 0 0 chr3 14021655 14021787 -204015371 + AluY SINE Alu 1 132 -179 2557 52 10 0 chr3 14021998 14022306 -204014852 + AluY SINE Alu 1 311 0 318 274 207 40 chr3 14022325 14022625 -204014533 - L2 LINE L2 -159 3113 2766 713 188 42 94 chr3 14022634 14022741 -204014417 + MER5A DNA MER1_type 6 100 -89 2327 95 7 0 chr3 14022741 14023036 -204014122 + AluSx SINE Alu 1 297 -15 713 188 42 94 chr3 14023036 14023120 -204014038 + MER5A DNA MER1_type 100 187 -2 2393 96 0 13 chr3 14023412 14023724 -204013434 - AluSx SINE Alu -4 308 1 303 342 0 0 chr3 14023808 14023884 -204013274 - L2 LINE L2 0 3313 3238 295 246 54 108 chr3 14023935 14024065 -204013093 - L2 LINE L2 -215 3057 2935 1791 175 3 16 chr3 14024099 14024402 -204012756 + AluJo SINE Alu 1 299 -13 2517 96 0 0 chr3 14024689 14025001 -204012157 + AluSx SINE Alu 1 312 0 2467 83 3 10 chr3 14025719 14026031 -204011127 + AluSg SINE Alu 1 310 0 2529 58 0 0 chr3 14026141 14026435 -204010723 - AluY SINE Alu -17 294 1 1774 89 46 19 chr3 14026435 14026694 -204010464 - AluSq SINE Alu -13 300 35 1881 79 0 8 chr3 14026705 14026945 -204010213 - AluY SINE Alu -73 238 1 2098 116 13 20 chr3 14027103 14027404 -204009754 - AluSx SINE Alu -13 299 1 1373 142 40 36 chr3 14027413 14027638 -204009520 - AluJb SINE Alu -23 289 64 25 31 0 0 chr3 14027643 14027675 -204009483 + AT_rich Low_complexity Low_complexity 1 32 0 351 136 0 61 chr3 14027675 14027741 -204009417 - AluJb SINE Alu -220 82 21 2223 122 0 7 chr3 14027764 14028067 -204009091 - AluSx SINE Alu -11 301 1 189 0 0 0 chr3 14028555 14028576 -204008582 + (CAGGC)n Simple_repeat Simple_repeat 5 25 0 2011 157 0 0 chr3 14028641 14028940 -204008218 - AluSx SINE Alu -13 299 1 1775 175 29 0 chr3 14029127 14029469 -204007689 + MLT1A1 LTR MaLR 13 364 -1 256 234 0 0 chr3 14029504 14029568 -204007590 + Charlie5 DNA MER1_type 2430 2493 -119 8067 59 7 21 chr3 14029628 14030611 -204006547 - LTR5 LTR ERVK 0 969 1 411 95 11 168 chr3 14030611 14030706 -204006452 - SVA Other Other -450 936 857 17721 41 2 1 chr3 14030709 14032893 -204004265 - HERVK LTR ERVK -96 7147 4961 * 20958 64 2 3 chr3 14032883 14035602 -204001556 - HERVK LTR ERVK -4528 2715 1 6791 82 11 3 chr3 14035602 14036451 -204000707 - LTR5 LTR ERVK 0 969 115 463 71 43 0 chr3 14036451 14036521 -204000637 - LTR5 LTR ERVK -896 73 1 993 267 44 0 chr3 14036522 14036863 -204000295 + L1M4b LINE L1 594 949 -5910 423 274 0 0 chr3 14038045 14038158 -203999000 - L1MA7 LINE L1 -6 6285 6173 * 672 233 12 81 chr3 14038156 14038414 -203998744 + L1MA7 LINE L1 5893 6132 -159 1565 198 0 42 chr3 14039160 14039473 -203997685 + AluJo SINE Alu 1 300 -12 317 200 24 136 chr3 14039476 14039601 -203997557 + L2 LINE L2 2283 2393 -921 816 156 65 54 chr3 14039603 14039789 -203997369 - AluJo SINE Alu -4 308 121 1651 246 142 25 chr3 14039794 14040029 -203997129 + L2 LINE L2 2401 2607 -706 2566 84 0 0 chr3 14040029 14040340 -203996818 - AluY SINE Alu 0 311 1 1651 246 142 25 chr3 14040340 14040935 -203996223 + L2 LINE L2 2607 3312 -1 214 318 16 0 chr3 14040936 14040999 -203996159 + L2 LINE L2 3247 3310 -3 245 109 22 0 chr3 14041090 14041136 -203996022 + GA-rich Low_complexity Low_complexity 2 48 0 189 107 0 0 chr3 14041131 14041159 -203995999 + (GAAAA)n Simple_repeat Simple_repeat 5 32 0 * 891 97 16 8 chr3 14042680 14042804 -203994354 + AluSg SINE Alu 12 136 -174 2286 60 7 20 chr3 14042807 14043106 -203994052 + AluY SINE Alu 1 295 -16 189 0 0 0 chr3 14043113 14043134 -203994024 + (T)n Simple_repeat Simple_repeat 1 21 0 440 294 60 44 chr3 14043721 14043969 -203993189 - L2 LINE L2 -1 3312 3061 254 237 0 58 chr3 14044114 14044253 -203992905 + (CAAA)n Simple_repeat Simple_repeat 3 133 0 427 174 14 0 chr3 14044436 14044505 -203992653 - AluS SINE Alu -239 74 5 765 93 0 0 chr3 14044516 14044613 -203992545 - AluSg/x SINE Alu -17 295 199 2397 95 0 0 chr3 14044626 14044920 -203992238 - AluSg SINE Alu -16 294 1 10044 110 12 35 chr3 14044920 14045219 -203991939 - Tigger1 DNA MER2_type -823 1595 1291 2211 121 3 0 chr3 14045219 14045524 -203991634 - AluSg1 SINE Alu -3 306 1 10044 110 12 35 chr3 14045524 14046337 -203990821 - Tigger1 DNA MER2_type -1127 1291 461 2883 16 0 3 chr3 14046337 14046653 -203990505 - AluYb8 SINE Alu -3 315 1 10044 110 12 35 chr3 14046653 14046682 -203990476 - Tigger1 DNA MER2_type -1957 461 433 858 150 0 15 chr3 14046682 14046815 -203990343 - FLAM_C SINE Alu -2 131 1 10044 110 12 35 chr3 14046815 14047304 -203989854 - Tigger1 DNA MER2_type -1985 433 1 200 182 0 0 chr3 14047384 14047417 -203989741 + GA-rich Low_complexity Low_complexity 3 35 0 1982 114 14 14 chr3 14047438 14047751 -203989407 + AluSx SINE Alu 1 312 0 2214 107 0 10 chr3 14047951 14048240 -203988918 - AluSx SINE Alu -26 286 1 1790 150 21 0 chr3 14048266 14048546 -203988612 - AluJo SINE Alu -26 286 1 1172 246 128 20 chr3 14049049 14049412 -203987746 + L1ME3A LINE L1 5572 5985 -185 2442 82 0 0 chr3 14049412 14049706 -203987452 + AluY SINE Alu 1 294 -17 1172 246 128 20 chr3 14049706 14049749 -203987409 + L1ME3A LINE L1 5985 6022 -148 1816 154 20 30 chr3 14049843 14050141 -203987017 + AluJb SINE Alu 1 295 -17 520 264 44 39 chr3 14050158 14050340 -203986818 + L1MC4a LINE L1 5706 5888 -1920 243 286 24 32 chr3 14050729 14050855 -203986303 + L1ME4a LINE L1 5603 5727 -394 245 229 36 24 chr3 14050856 14050939 -203986219 + GA-rich Low_complexity Low_complexity 1 84 0 347 316 75 8 chr3 14050972 14051105 -203986053 + L1ME4a LINE L1 5777 5918 -203 905 240 107 25 chr3 14051127 14051369 -203985789 - MIR SINE MIR 0 262 1 195 42 0 0 chr3 14051672 14051696 -203985462 + (CTTG)n Simple_repeat Simple_repeat 2 25 0 2057 144 16 0 chr3 14051703 14052008 -203985150 - AluSq SINE Alu -3 310 1 935 267 18 14 chr3 14052303 14052580 -203984578 + L2 LINE L2 2430 2707 -607 995 155 202 19 chr3 14052591 14052798 -203984360 + AluSg1 SINE Alu 1 247 -57 1491 135 0 5 chr3 14052798 14053013 -203984145 + AluJo SINE Alu 85 298 -14 259 228 195 34 chr3 14053018 14053201 -203983957 + L2 LINE L2 2726 2932 -340 659 320 152 29 chr3 14053546 14054349 -203982809 + L2 LINE L2 1988 2889 -425 613 296 137 17 chr3 14054407 14054605 -203982553 - MIR SINE MIR 0 262 31 2207 108 0 3 chr3 14054605 14054910 -203982248 - AluSx SINE Alu -8 304 1 613 296 137 17 chr3 14054910 14054944 -203982214 - MIR SINE MIR -231 31 2 234 191 64 0 chr3 14054992 14055039 -203982119 - L2 LINE L2 0 3272 3223 2087 116 7 3 chr3 14055083 14055384 -203981774 + AluSq SINE Alu 1 302 -11 1472 278 94 10 chr3 14055650 14056259 -203980899 + L1MC4a LINE L1 5260 5919 -1889 943 194 6 0 chr3 14056263 14056433 -203980725 + MLT1F1 LTR MaLR 5 175 -392 1457 156 30 165 chr3 14056433 14056541 -203980617 + L1MB8 LINE L1 4675 4796 -1350 1500 168 37 27 chr3 14056541 14056838 -203980320 + AluJo SINE Alu 12 311 -1 1457 156 30 165 chr3 14056838 14056865 -203980293 + L1MB8 LINE L1 4796 4825 -1321 2174 82 3 14 chr3 14056865 14057158 -203980000 - AluSg SINE Alu -19 291 2 1457 156 30 165 chr3 14057158 14057407 -203979751 + L1MB8 LINE L1 4825 4987 -1159 1996 135 0 0 chr3 14057407 14057703 -203979455 + AluSx SINE Alu 1 296 -16 1457 156 30 165 chr3 14057703 14057789 -203979369 + L1MB8 LINE L1 4987 5083 -1063 3064 165 9 55 chr3 14057789 14057921 -203979237 + L1MB8 LINE L1 5561 5697 -481 2081 123 0 0 chr3 14057921 14058221 -203978937 + AluSx SINE Alu 1 300 -12 3064 165 9 55 chr3 14058221 14058444 -203978714 + L1MB8 LINE L1 5697 5929 -249 1903 143 7 7 chr3 14058444 14058744 -203978414 + AluJo SINE Alu 3 302 -10 3064 165 9 55 chr3 14058744 14059025 -203978133 + L1MB8 LINE L1 5929 6169 -9 896 194 42 73 chr3 14059045 14059137 -203978021 + MLT1F1 LTR MaLR 167 260 -307 2388 66 3 0 chr3 14059137 14059442 -203977716 + AluY SINE Alu 1 306 -5 896 194 42 73 chr3 14059442 14059632 -203977526 + MLT1F1 LTR MaLR 260 543 -24 1789 155 30 3 chr3 14059647 14059943 -203977215 - AluJb SINE Alu -8 304 1 257 81 0 0 chr3 14059943 14059980 -203977178 + MLT1F1 LTR MaLR 530 566 -1 24 32 0 0 chr3 14060193 14060224 -203976934 + AT_rich Low_complexity Low_complexity 1 31 0 1973 130 3 0 chr3 14060263 14060578 -203976580 + AluSx SINE Alu 1 312 0 601 245 68 112 chr3 14060717 14061011 -203976147 + L2 LINE L2 2981 3261 -11 385 301 16 38 chr3 14061038 14061221 -203975937 + GA-rich Low_complexity Low_complexity 2 180 0 765 159 24 0 chr3 14061317 14061443 -203975715 + AluJo/FLAM SINE Alu 2 130 -172 437 85 0 10 chr3 14061446 14061603 -203975555 + AluSq SINE Alu 44 250 -63 1060 204 23 9 chr3 14061603 14061648 -203975510 + AluJo SINE Alu 85 128 -184 258 32 0 0 chr3 14061648 14061679 -203975479 + (TAAAA)n Simple_repeat Simple_repeat 3 33 0 1060 204 23 9 chr3 14061679 14061853 -203975305 + AluJo SINE Alu 128 307 -5 2293 96 0 3 chr3 14061951 14062264 -203974894 + AluSx SINE Alu 1 312 0 260 288 123 0 chr3 14062369 14062442 -203974716 + L2 LINE L2 3229 3310 -3 383 211 150 54 chr3 14062466 14062613 -203974545 + MIR3 SINE MIR 36 196 -12 517 286 112 33 chr3 14062705 14062910 -203974248 - MIR SINE MIR 0 262 34 1903 155 0 0 chr3 14062910 14063207 -203973951 - AluJo SINE Alu -15 297 1 517 286 112 33 chr3 14063207 14063242 -203973916 - MIR SINE MIR -228 34 3 268 276 21 22 chr3 14063408 14063569 -203973589 + MIR SINE MIR 26 250 -12 1972 130 0 0 chr3 14063697 14064014 -203973144 - AluJb SINE Alu 0 312 1 702 254 27 22 chr3 14064021 14064206 -203972952 + MIR SINE MIR 29 214 -48 1548 262 135 39 chr3 14064551 14065085 -203972073 + MLT1K LTR MaLR 4 588 0 2247 83 0 13 chr3 14065322 14065622 -203971536 + AluSq SINE Alu 1 296 -17 878 134 0 0 chr3 14065813 14065940 -203971218 - FLAM_C SINE Alu -16 127 1 214 381 48 8 chr3 14065974 14066100 -203971058 - MIR SINE MIR -55 153 23 463 222 79 84 chr3 14066230 14066433 -203970725 + MIR3 SINE MIR 3 204 -4 703 315 141 21 chr3 14066702 14067184 -203969974 + MARNA DNA Mariner 34 573 -13 425 282 81 24 chr3 14067696 14067820 -203969338 - MIR SINE MIR -59 149 19 237 252 0 73 chr3 14068594 14068745 -203968413 + G-rich Low_complexity Low_complexity 1 140 0 21 89 0 0 chr3 14069516 14069572 -203967586 + GC_rich Low_complexity Low_complexity 1 56 0 23 86 0 0 chr3 14069762 14069820 -203967338 + GC_rich Low_complexity Low_complexity 1 58 0 292 301 0 0 chr3 14070294 14070387 -203966771 + L2 LINE L2 3211 3303 -10 270 234 56 56 chr3 14070508 14070615 -203966543 + MIR SINE MIR 39 145 -63 883 187 0 0 chr3 14070734 14070889 -203966269 + FRAM SINE Alu 1 155 -11 227 294 42 42 chr3 14071289 14071408 -203965750 - MIR3 SINE MIR 0 208 90 450 204 34 109 chr3 14071457 14071604 -203965554 - L2 LINE L2 0 3272 3137 258 32 0 0 chr3 14071990 14072021 -203965137 + (TC)n Simple_repeat Simple_repeat 2 32 0 369 0 0 0 chr3 14072023 14072064 -203965094 + (CA)n Simple_repeat Simple_repeat 1 41 0 740 262 87 36 chr3 14072075 14072350 -203964808 + MLT1K LTR MaLR 138 426 -162 2154 116 3 0 chr3 14072350 14072725 -203964433 + AluSx SINE Alu 1 376 0 599 222 54 11 chr3 14072725 14072910 -203964248 + MLT1K LTR MaLR 379 571 -17 1984 122 20 0 chr3 14073003 14073489 -203963669 + AluSq SINE Alu 1 313 0 437 318 79 9 chr3 14073521 14073735 -203963423 + MIR SINE MIR 33 261 -1 945 221 61 35 chr3 14074071 14074154 -203963004 - MIR SINE MIR -21 241 162 2055 158 39 16 chr3 14074154 14074535 -203962623 + MLT1B LTR MaLR 1 390 0 945 221 61 35 chr3 14074535 14074682 -203962476 - MIR SINE MIR -100 162 5 2005 116 13 16 chr3 14074703 14075013 -203962145 - AluSx SINE Alu -3 309 1 466 270 209 23 chr3 14075056 14075271 -203961887 + MIR SINE MIR 6 260 -2 5390 36 8 159 chr3 14075282 14076305 -203960853 + SVA Other Other 1 868 -518 2027 128 0 13 chr3 14076563 14076868 -203960290 + AluSx SINE Alu 1 301 -11 977 196 10 10 chr3 14076869 14077063 -203960095 - L1PB4 LINE L1 -14 6142 5949 2300 61 0 10 chr3 14077693 14077990 -203959168 - AluY SINE Alu -17 294 1 757 165 0 0 chr3 14078000 14078121 -203959037 - FLAM_C SINE Alu -22 121 1 462 65 0 0 chr3 14078314 14078376 -203958782 + (GA)n Simple_repeat Simple_repeat 1 62 0 874 141 0 15 chr3 14078524 14078659 -203958499 - FLAM_A SINE Alu 0 133 1 541 80 91 11 chr3 14078922 14079010 -203958148 + MLT1B LTR MaLR 238 332 -58 1080 125 11 11 chr3 14079010 14079186 -203957972 + AluY SINE Alu 136 311 0 329 134 119 15 chr3 14079193 14079260 -203957898 + MLT1B LTR MaLR 317 390 0 392 256 115 39 chr3 14079284 14079440 -203957718 - L2 LINE L2 -10 3303 3136 203 266 31 62 chr3 14079481 14079545 -203957613 + MIR SINE MIR 85 146 -62 23 0 0 0 chr3 14079601 14079624 -203957534 + AT_rich Low_complexity Low_complexity 1 23 0 1034 170 0 11 chr3 14079639 14079821 -203957337 - AluJb SINE Alu -11 301 122 580 274 17 45 chr3 14080106 14080227 -203956931 - L1MDa LINE L1 -3343 3197 3074 1562 171 0 63 chr3 14080227 14080560 -203956598 + AluJo SINE Alu 1 312 0 580 274 17 45 chr3 14080560 14080726 -203956432 - L1MDa LINE L1 -3466 3074 2918 538 229 12 54 chr3 14080714 14080880 -203956278 + L1ME2 LINE L1 5996 6154 -10 * 265 282 53 0 chr3 14081408 14081539 -203955619 - L1MDa LINE L1 -3959 2581 2444 2426 46 0 33 chr3 14081795 14082101 -203955057 - AluY SINE Alu -15 296 1 796 230 0 0 chr3 14082176 14082328 -203954830 + FRAM SINE Alu 1 152 -14 4635 137 37 18 chr3 14082506 14083325 -203953833 - L1MB4 LINE L1 -10 6170 5337 2026 103 31 0 chr3 14083327 14083617 -203953541 + AluSx SINE Alu 1 299 -13 1734 217 5 8 chr3 14083641 14084032 -203953126 - L1MB4 LINE L1 -940 5206 4817 1105 126 12 0 chr3 14084034 14084201 -203952957 - AluSg/x SINE Alu -13 299 131 661 190 41 8 chr3 14084356 14084477 -203952681 - FLAM_C SINE Alu -17 126 2 3603 194 53 52 chr3 14084669 14085379 -203951779 - L1ME1 LINE L1 -5 6161 5449 9946 41 73 5 chr3 14085379 14086694 -203950464 + SVA Other Other 1 1402 0 3603 194 53 52 chr3 14086694 14086909 -203950249 - L1ME1 LINE L1 -717 5449 5236 672 103 62 0 chr3 14086912 14087030 -203950128 - LTR49 LTR ERV1 -3 592 486 580 208 10 0 chr3 14087036 14087132 -203950026 + LTR49-int LTR ERV1 1 97 -6234 2016 134 0 7 chr3 14087133 14087440 -203949718 - AluSx SINE Alu -7 305 1 1914 154 77 100 chr3 14087442 14087910 -203949248 + LTR49-int LTR ERV1 734 1190 -5141 336 257 0 14 chr3 14087937 14088007 -203949151 + tRNA-Glu-GAG tRNA tRNA 7 75 0 549 115 67 5 chr3 14088061 14088165 -203948993 + LTR49-int LTR ERV1 1290 1934 -2946 2122 98 11 0 chr3 14088260 14088547 -203948611 + AluY SINE Alu 10 299 -12 3852 157 13 51 chr3 14088582 14088867 -203948291 + LTR49-int LTR ERV1 1372 1666 -4665 2153 90 0 7 chr3 14088867 14089156 -203948002 + AluSg1 SINE Alu 5 291 -18 3852 157 13 51 chr3 14089156 14089615 -203947543 + LTR49-int LTR ERV1 1666 2088 -4243 3878 128 10 38 chr3 14089621 14090230 -203946928 - LTR26 LTR ERV1 -11 592 1 438 331 66 36 chr3 14090232 14090537 -203946621 - HUERS-P1 LTR ERV1 -4 6259 5946 335 286 81 49 chr3 14090614 14090799 -203946359 - HERV30 LTR ERV1 -488 4466 4276 1808 176 0 0 chr3 14090961 14091273 -203945885 - AluJo SINE Alu 0 312 1 2222 115 0 0 chr3 14092104 14092416 -203944742 + AluSx SINE Alu 1 312 0 1900 131 37 0 chr3 14092535 14092832 -203944326 + AluSx SINE Alu 1 308 -4 639 283 45 82 chr3 14093062 14093333 -203943825 - HERV30 LTR ERV1 -517 7603 7323 1660 160 3 13 chr3 14093333 14093633 -203943525 + AluJb SINE Alu 1 297 -15 639 283 45 82 chr3 14093633 14093844 -203943314 - HERV30 LTR ERV1 -797 7323 5010 2231 81 10 0 chr3 14093844 14094139 -203943019 - AluSg SINE Alu -12 298 1 447 343 25 47 chr3 14094143 14094507 -203942651 - HERV30 LTR ERV1 -2093 5029 4674 2167 82 0 3 chr3 14094606 14094897 -203942261 + AluSg SINE Alu 1 290 -20 1626 338 42 44 chr3 14095238 14095273 -203941885 - HERV30 LTR ERV1 -2813 4756 4722 1708 188 0 0 chr3 14095273 14095566 -203941592 + AluJo SINE Alu 3 295 -17 1626 338 42 44 chr3 14095566 14096988 -203940170 - HERV30 LTR ERV1 -2847 4722 2832 411 100 0 0 chr3 14097060 14097120 -203940038 + Alu SINE Alu 248 307 -4 793 340 47 50 chr3 14097187 14097828 -203939330 - HERV30 LTR ERV1 -5568 1554 916 401 286 31 8 chr3 14098011 14098179 -203938979 - HERV30 LTR ERV1 -5067 1611 1448 * 1721 258 47 59 chr3 14098156 14098768 -203938390 - HERV30 LTR ERV1 -5188 1075 471 2375 68 0 7 chr3 14098885 14099195 -203937963 + AluY SINE Alu 1 308 -3 310 364 45 13 chr3 14099207 14099361 -203937797 - HERV30 LTR ERV1 -6080 183 25 3415 136 30 76 chr3 14099385 14100017 -203937141 - LTR26 LTR ERV1 0 603 1 371 88 29 88 chr3 14100019 14100041 -203937117 + LTR49-int LTR ERV1 2084 2106 -4225 2015 143 74 36 chr3 14100041 14100229 -203936929 - LTR23 LTR ERV1 0 437 258 2183 90 3 13 chr3 14100229 14100539 -203936619 + AluSx SINE Alu 1 307 -5 2015 143 74 36 chr3 14100539 14100771 -203936387 - LTR23 LTR ERV1 -179 258 1 371 88 29 88 chr3 14100771 14100816 -203936342 + LTR49-int LTR ERV1 2106 2147 -4184 2063 121 3 33 chr3 14100821 14100940 -203936218 - L1PB3 LINE L1 -7 6147 6026 363 23 0 0 chr3 14100940 14100984 -203936174 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 2218 68 11 0 chr3 14100984 14101265 -203935893 - AluSp SINE Alu -29 284 1 2063 121 3 33 chr3 14101265 14101474 -203935684 - L1PB3 LINE L1 -126 6028 5828 1874 127 37 3 chr3 14101474 14101773 -203935385 - AluSx SINE Alu -3 309 1 3991 166 13 22 chr3 14101776 14101885 -203935273 - L1PB3 LINE L1 -464 5690 5582 2073 112 3 7 chr3 14101885 14102189 -203934969 + AluSx SINE Alu 4 306 -6 3991 166 13 22 chr3 14102189 14102636 -203934522 - L1PB3 LINE L1 -572 5582 5132 1932 119 0 14 chr3 14102636 14102946 -203934212 - AluSx SINE Alu 0 306 1 3991 166 13 22 chr3 14102946 14103609 -203933549 - L1PB3 LINE L1 -1022 5132 4484 2163 69 13 7 chr3 14103609 14103915 -203933243 - AluY SINE Alu -3 308 1 674 173 0 0 chr3 14103920 14104030 -203933128 - FLAM_C SINE Alu -15 128 19 740 147 0 0 chr3 14104031 14104140 -203933018 + MER50 LTR ERV1 70 178 -556 1894 136 17 0 chr3 14104145 14104439 -203932719 + AluSp SINE Alu 1 299 -14 345 132 38 0 chr3 14104447 14104500 -203932658 + LTR49 LTR ERV1 535 589 -6 1313 197 19 104 chr3 14104502 14104555 -203932603 - L1M4 LINE L1 -904 5242 5186 2322 66 7 3 chr3 14104555 14104856 -203932302 - AluY SINE Alu -9 302 1 1313 197 19 104 chr3 14104856 14104953 -203932205 - L1M4 LINE L1 -960 5186 5082 1858 150 10 16 chr3 14104953 14105267 -203931891 - AluJo SINE Alu 0 312 1 1313 197 19 104 chr3 14105267 14105547 -203931611 - L1M4 LINE L1 -1064 5082 4848 776 216 13 0 chr3 14105534 14105687 -203931471 + L1MB7 LINE L1 5425 5579 -587 * 1754 176 6 6 chr3 14105687 14105999 -203931159 + AluJb SINE Alu 1 312 0 389 114 48 59 chr3 14106018 14106081 -203931077 + L1MB7 LINE L1 5552 5616 -549 2570 132 50 68 chr3 14106081 14106580 -203930578 + LTR2B LTR ERV1 1 490 0 389 114 48 59 chr3 14106580 14106612 -203930546 + L1MB7 LINE L1 5616 5647 -518 496 236 49 0 chr3 14106813 14106936 -203930222 + L1MB7 LINE L1 5635 5763 -401 1667 112 4 45 chr3 14106936 14107203 -203929955 + LTR8 LTR ERV1 1 256 -435 7304 44 7 99 chr3 14107203 14108350 -203928808 + SVA Other Other 7 1047 -339 473 196 50 33 chr3 14108396 14108546 -203928612 + L1MC5 LINE L1 7786 7995 0 2731 91 16 139 chr3 14108567 14108888 -203928270 + LTR8 LTR ERV1 240 475 -216 1705 178 20 0 chr3 14108888 14109191 -203927967 + AluJb SINE Alu 1 309 -3 2731 91 16 139 chr3 14109191 14109385 -203927773 + LTR8 LTR ERV1 475 691 0 614 204 69 61 chr3 14109387 14109672 -203927486 - LTR48B LTR ERV1 -10 729 382 273 167 45 15 chr3 14109735 14109801 -203927357 - LTR48B LTR ERV1 -449 195 128 268 274 104 19 chr3 14109773 14109879 -203927279 - MER39 LTR ERV1 -582 125 11 * 1102 170 131 0 chr3 14109912 14110118 -203927040 - MER34C LTR ERV1 -352 233 1 2278 166 14 2 chr3 14110120 14110548 -203926610 + L1MB7 LINE L1 5752 6184 0 2209 88 3 3 chr3 14110558 14110854 -203926304 + AluSx SINE Alu 1 296 -16 617 215 28 0 chr3 14110854 14110998 -203926160 - L1M4 LINE L1 -1291 4855 4708 242 28 0 28 chr3 14110998 14111034 -203926124 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 990 157 20 108 chr3 14111035 14111149 -203926009 - AluJo SINE Alu -80 232 150 1683 101 0 4 chr3 14111149 14111377 -203925781 - AluSc SINE Alu -82 227 1 990 157 20 108 chr3 14111377 14111511 -203925647 - AluJo SINE Alu -162 150 6 1083 202 72 19 chr3 14111516 14111823 -203925335 - L1M4 LINE L1 -1440 4706 4384 1623 158 3 30 chr3 14111829 14111883 -203925275 - AluJb SINE Alu -21 291 237 2190 158 12 6 chr3 14111883 14112224 -203924934 + MER61A LTR ERV1 1 343 0 1623 158 3 30 chr3 14112224 14112467 -203924691 - AluJb SINE Alu -75 237 2 2089 68 64 20 chr3 14112520 14112816 -203924342 - AluY SINE Alu -2 309 1 2059 111 0 55 chr3 14112831 14113156 -203924002 - AluSg SINE Alu -1 309 3 2250 91 7 3 chr3 14113193 14113501 -203923657 - AluY SINE Alu -2 309 1 1400 220 58 47 chr3 14113512 14113901 -203923257 - L1M4 LINE L1 -1807 4339 3943 2213 89 0 13 chr3 14113901 14114205 -203922953 - AluSc SINE Alu -9 300 1 1400 220 58 47 chr3 14114205 14114265 -203922893 - L1M4 LINE L1 -2203 3943 3885 1446 204 72 135 chr3 14114265 14114990 -203922168 - LTR8A LTR ERV1 0 727 49 976 153 10 61 chr3 14114992 14115188 -203921970 - LTR8 LTR ERV1 -503 188 3 5048 70 14 43 chr3 14115188 14115768 -203921390 - LTR8 LTR ERV1 0 691 134 2169 29 39 59 chr3 14115768 14116075 -203921083 + AluY SINE Alu 1 301 -10 5048 70 14 43 chr3 14116075 14116206 -203920952 - LTR8 LTR ERV1 -557 134 1 519 138 0 12 chr3 14116268 14116348 -203920810 - AluJ/FLAM SINE Alu -225 87 9 552 238 67 54 chr3 14116359 14116582 -203920576 - L1M4 LINE L1 -2368 3778 3553 22 35 0 0 chr3 14116598 14116627 -203920531 + GC_rich Low_complexity Low_complexity 1 29 0 2008 103 3 0 chr3 14117032 14117322 -203919836 + AluSx SINE Alu 1 291 -21 1812 157 0 0 chr3 14117337 14117636 -203919522 + AluJo SINE Alu 1 299 -13 1909 115 41 0 chr3 14117900 14118195 -203918963 + AluSq SINE Alu 1 307 -6 180 0 0 0 chr3 14118195 14118215 -203918943 + (TA)n Simple_repeat Simple_repeat 2 21 0 2141 65 25 0 chr3 14119303 14119603 -203917555 - AluSp SINE Alu 0 307 1 694 263 28 49 chr3 14120080 14120124 -203917034 - L1M4 LINE L1 -2585 3561 3518 2319 78 0 10 chr3 14120124 14120433 -203916725 - AluY SINE Alu -5 306 1 694 263 28 49 chr3 14120433 14120473 -203916685 - L1M4 LINE L1 -2628 3518 3479 1626 158 39 7 chr3 14120473 14120758 -203916400 + AluJb SINE Alu 1 294 -18 694 263 28 49 chr3 14120758 14120957 -203916201 - L1M4 LINE L1 -2667 3479 3283 236 185 62 0 chr3 14120962 14121027 -203916131 - L1MB5 LINE L1 -6 6168 6100 1799 180 59 71 chr3 14121027 14121466 -203915692 - LTR8A LTR ERV1 0 727 294 291 260 68 0 chr3 14121464 14121537 -203915621 - LTR8 LTR ERV1 -613 78 1 * 795 191 48 33 chr3 14121540 14121750 -203915408 - L1MB5 LINE L1 -74 6100 5888 807 173 0 33 chr3 14121750 14121900 -203915258 - AluJb SINE Alu -82 230 86 860 145 0 0 chr3 14121921 14122045 -203915113 - FLAM_C SINE Alu -8 125 2 23 0 0 0 chr3 14122054 14122077 -203915081 + AT_rich Low_complexity Low_complexity 1 23 0 393 284 36 4 chr3 14122177 14122357 -203914801 - L1MEd LINE L1 -1231 1259 983 22 0 0 0 chr3 14122362 14122384 -203914774 + AT_rich Low_complexity Low_complexity 1 22 0 1892 133 7 20 chr3 14122391 14122527 -203914631 + AluSx SINE Alu 1 137 -175 2236 102 3 0 chr3 14122527 14122830 -203914328 + AluSp SINE Alu 2 305 -8 1892 133 7 20 chr3 14122830 14122984 -203914174 + AluSx SINE Alu 137 289 -23 249 57 0 0 chr3 14122984 14123019 -203914139 + (CATA)n Simple_repeat Simple_repeat 2 36 0 786 161 0 0 chr3 14123028 14123146 -203914012 - FLAM_C SINE Alu -15 118 1 1930 141 0 3 chr3 14123211 14123502 -203913656 - AluSx SINE Alu -20 292 3 991 193 0 6 chr3 14123519 14123690 -203913468 - FAM SINE Alu -1 174 5 783 173 0 67 chr3 14123745 14123895 -203913263 + Tigger2a DNA MER2_type 1 140 -294 2116 104 20 0 chr3 14123895 14124193 -203912965 + AluY SINE Alu 1 304 -7 2079 108 6 25 chr3 14124193 14124509 -203912649 + AluSg SINE Alu 1 310 0 1979 112 37 27 chr3 14124509 14124805 -203912353 - THE1B LTR MaLR -65 299 1 918 41 0 0 chr3 14124805 14124926 -203912232 + Tigger2a DNA MER2_type 162 282 -162 1680 168 0 23 chr3 14124928 14125232 -203911926 + AluJo SINE Alu 3 299 -13 292 243 14 14 chr3 14125232 14125302 -203911856 + Tigger2a DNA MER2_type 375 444 0 2169 110 0 3 chr3 14125389 14125690 -203911468 - AluSq SINE Alu -13 300 1 446 297 198 4 chr3 14126072 14126304 -203910854 - MLT1L LTR MaLR -123 492 216 1690 141 31 10 chr3 14126551 14126841 -203910317 - AluJo SINE Alu -12 300 5 2416 53 0 13 chr3 14126880 14127183 -203909975 - AluY SINE Alu -12 299 1 1906 144 0 0 chr3 14127356 14127647 -203909511 - AluSx SINE Alu -21 291 1 617 212 74 20 chr3 14127680 14127734 -203909424 - MIR3 SINE MIR -55 153 103 2230 132 72 46 chr3 14127734 14128151 -203909007 + MSTA LTR MaLR 1 428 0 617 212 74 20 chr3 14128151 14128297 -203908861 - MIR3 SINE MIR -105 103 3 1627 240 45 35 chr3 14129114 14129340 -203907818 + Zaphod DNA AcHobo 1 234 -3797 1751 180 3 0 chr3 14129340 14129651 -203907507 + AluJb SINE Alu 1 312 0 1627 240 45 35 chr3 14129651 14129849 -203907309 + Zaphod DNA AcHobo 234 429 -3602 1362 116 55 116 chr3 14129851 14130070 -203907088 - L1PA15 LINE L1 -4 6161 5963 1888 103 82 10 chr3 14130070 14130361 -203906797 - AluSx SINE Alu 0 312 1 1362 116 55 116 chr3 14130361 14130433 -203906725 - L1PA15 LINE L1 -202 5963 5888 1645 176 27 117 chr3 14130435 14130740 -203906418 + Zaphod DNA AcHobo 422 753 -3278 976 207 0 11 chr3 14130740 14130914 -203906244 + FAM SINE Alu 1 172 -3 1806 174 0 0 chr3 14130918 14131217 -203905941 + AluJo SINE Alu 1 299 -13 1645 176 27 117 chr3 14131217 14131502 -203905656 + Zaphod DNA AcHobo 756 963 -3068 777 202 82 16 chr3 14131516 14131759 -203905399 + Zaphod DNA AcHobo 3595 3853 -178 1948 147 0 3 chr3 14131760 14132067 -203905091 + AluSx SINE Alu 1 306 -6 433 252 55 0 chr3 14132144 14132271 -203904887 + L2 LINE L2 2919 3052 -261 413 58 0 0 chr3 14132399 14132451 -203904707 + L1MA7 LINE L1 5857 5908 -383 366 312 132 10 chr3 14132458 14132663 -203904495 + L2 LINE L2 3084 3313 0 528 227 63 48 chr3 14132727 14132934 -203904224 + L1MC5 LINE L1 7705 7914 -47 250 354 39 22 chr3 14133093 14133271 -203903887 - L2 LINE L2 -188 3084 2904 698 269 77 21 chr3 14133290 14133718 -203903440 - MLT1L LTR MaLR -42 573 89 297 307 13 33 chr3 14133806 14133956 -203903202 - L2 LINE L2 -575 2739 2593 743 288 5 5 chr3 14133961 14134166 -203902992 + LTR33 LTR ERVL 9 213 -308 3159 203 63 16 chr3 14134269 14134953 -203902205 + LTR28 LTR ERV1 1 716 -304 818 214 3 124 chr3 14134928 14135227 -203901931 + MER52A LTR ERV1 1208 1470 -285 * 343 219 81 31 chr3 14135239 14135370 -203901788 + MER52A LTR ERV1 587 635 -1 295 264 52 97 chr3 14135381 14135478 -203901680 + LTR33 LTR ERVL 374 464 -57 2166 89 0 0 chr3 14135478 14135803 -203901355 - AluSc SINE Alu 0 325 1 295 264 52 97 chr3 14135803 14135859 -203901299 + LTR33 LTR ERVL 464 521 0 1868 147 0 7 chr3 14136104 14136404 -203900754 + AluSx SINE Alu 1 298 -14 871 133 37 0 chr3 14136591 14136726 -203900432 - LTR23 LTR ERV1 0 437 298 1816 146 4 4 chr3 14136729 14137049 -203900109 - AluJb SINE Alu 0 320 1 1180 166 4 57 chr3 14137049 14137296 -203899862 - LTR23 LTR ERV1 -203 234 1 1353 195 37 104 chr3 14137296 14137788 -203899370 + MLT1C LTR MaLR 9 467 0 1246 181 116 32 chr3 14137942 14138219 -203898939 + AluJo SINE Alu 1 300 -12 1100 238 52 82 chr3 14138274 14138667 -203898491 - L1MC5 LINE L1 -99 7862 7492 1965 149 7 0 chr3 14138667 14138968 -203898190 - AluSx SINE Alu -9 303 1 1100 238 52 82 chr3 14138968 14139187 -203897971 - L1MC5 LINE L1 -469 7492 7268 457 202 12 0 chr3 14139370 14139454 -203897704 - AluS SINE Alu -223 90 6 538 199 160 6 chr3 14139459 14139615 -203897543 - L1MEc LINE L1 -3746 2469 2290 1870 172 60 109 chr3 14139650 14140017 -203897141 - L1ME2 LINE L1 -185 5979 5650 2237 110 7 0 chr3 14140017 14140327 -203896831 - AluSx SINE Alu 0 312 1 1870 172 60 109 chr3 14140327 14140547 -203896611 - L1ME2 LINE L1 -514 5650 5421 1329 152 119 30 chr3 14140575 14140650 -203896508 - AluJo SINE Alu -19 293 226 2092 189 41 41 chr3 14140650 14141136 -203896022 - MER66B LTR ERV1 0 486 1 1329 152 119 30 chr3 14141136 14141329 -203895829 - AluJo SINE Alu -86 226 1 342 0 0 0 chr3 14141331 14141369 -203895789 + (TA)n Simple_repeat Simple_repeat 1 38 0 1979 127 3 0 chr3 14141370 14141661 -203895497 - AluSx SINE Alu -20 292 1 364 304 44 13 chr3 14141687 14141845 -203895313 - L1MEc LINE L1 -4595 1801 1639 352 42 0 0 chr3 14141853 14141901 -203895257 - AluY SINE Alu 0 302 255 1504 168 0 25 chr3 14141901 14142181 -203894977 + AluJb SINE Alu 23 295 -17 697 229 44 84 chr3 14142183 14142372 -203894786 - L1ME3 LINE L1 -7 6155 5979 1927 133 0 25 chr3 14142372 14142687 -203894471 - AluSx SINE Alu -5 307 1 697 229 44 84 chr3 14142687 14142746 -203894412 - L1ME3 LINE L1 -183 5979 5919 593 122 28 37 chr3 14142792 14142899 -203894259 - L1MB8 LINE L1 -38 6140 6035 380 242 0 22 chr3 14142902 14142993 -203894165 - MLT1F LTR MaLR -407 135 47 2094 126 0 0 chr3 14143207 14143509 -203893649 - AluSx SINE Alu -10 302 1 2128 100 6 16 chr3 14143517 14143828 -203893330 - AluSp SINE Alu -4 309 2 480 200 139 133 chr3 14143869 14143935 -203893223 + MER5A DNA MER1_type 9 73 -116 1744 141 3 17 chr3 14143935 14144226 -203892932 + AluJo SINE Alu 1 287 -25 480 200 139 133 chr3 14144226 14144339 -203892819 + MER5A DNA MER1_type 73 189 0 426 207 24 0 chr3 14144369 14144451 -203892707 + FLAM SINE Alu 40 123 -20 202 239 0 0 chr3 14144514 14144560 -203892598 + A-rich Low_complexity Low_complexity 1 46 0 350 235 53 38 chr3 14144573 14144705 -203892453 + L1M4 LINE L1 4999 5132 -1014 327 262 50 21 chr3 14144743 14144884 -203892274 + L1M4 LINE L1 5103 5247 -899 4669 104 6 56 chr3 14144889 14145617 -203891541 - LTR8 LTR ERV1 0 691 1 26532 104 107 122 chr3 14145617 14146254 -203890904 - HUERS-P1 LTR ERV1 0 6263 5618 2316 75 0 0 chr3 14146254 14146548 -203890610 - AluY SINE Alu -17 294 1 26532 104 107 122 chr3 14146548 14146575 -203890583 - HUERS-P1 LTR ERV1 -645 5618 5592 1738 125 31 48 chr3 14146575 14146896 -203890262 + AluSx SINE Alu 1 316 0 26532 104 107 122 chr3 14146896 14147199 -203889959 - HUERS-P1 LTR ERV1 -671 5592 5286 2235 78 3 3 chr3 14147199 14147493 -203889665 - AluSp SINE Alu -18 295 2 26532 104 107 122 chr3 14147493 14147771 -203889387 - HUERS-P1 LTR ERV1 -977 5286 5005 1812 122 0 42 chr3 14147771 14148092 -203889066 - AluSx SINE Alu 0 315 7 26532 104 107 122 chr3 14148092 14148120 -203889038 - HUERS-P1 LTR ERV1 -1258 5005 4978 2009 104 13 13 chr3 14148120 14148429 -203888729 - AluSc SINE Alu 0 309 1 1031 54 0 8 chr3 14148435 14148565 -203888593 - AluY SINE Alu -85 226 98 26532 104 107 122 chr3 14148565 14148681 -203888477 - HUERS-P1 LTR ERV1 -1290 4973 4857 2111 80 0 0 chr3 14148681 14148956 -203888202 - AluSq SINE Alu -14 299 25 26532 104 107 122 chr3 14148956 14149371 -203887787 - HUERS-P1 LTR ERV1 -1406 4857 4437 2377 77 0 0 chr3 14149371 14149681 -203887477 + AluY SINE Alu 2 311 0 26532 104 107 122 chr3 14149681 14149722 -203887436 - HUERS-P1 LTR ERV1 -1826 4437 4397 690 180 262 0 chr3 14149722 14149894 -203887264 + AluJb SINE Alu 82 298 -14 26532 104 107 122 chr3 14149894 14150016 -203887142 - HUERS-P1 LTR ERV1 -1866 4397 4275 2090 121 0 0 chr3 14150016 14150313 -203886845 - AluSx SINE Alu -15 297 1 26532 104 107 122 chr3 14150313 14150405 -203886753 - HUERS-P1 LTR ERV1 -1988 4275 4183 2364 68 7 0 chr3 14150405 14150713 -203886445 - AluY SINE Alu 0 311 2 26532 104 107 122 chr3 14150713 14151393 -203885765 - HUERS-P1 LTR ERV1 -2080 4183 3494 2059 125 0 10 chr3 14151393 14151571 -203885587 - AluSx SINE Alu -1 311 136 2244 80 3 0 chr3 14151571 14151900 -203885258 - AluY SINE Alu 0 311 1 2059 125 0 10 chr3 14151900 14152034 -203885124 - AluSx SINE Alu -176 136 2 26532 104 107 122 chr3 14152034 14152234 -203884924 - HUERS-P1 LTR ERV1 -2769 3494 3292 2219 107 0 0 chr3 14152234 14152542 -203884616 + AluSx SINE Alu 1 308 -4 26532 104 107 122 chr3 14152542 14154020 -203883138 - HUERS-P1 LTR ERV1 -2971 3292 1793 1659 111 111 0 chr3 14154020 14154290 -203882868 - AluSx SINE Alu -12 300 1 26532 104 107 122 chr3 14154290 14154440 -203882718 - HUERS-P1 LTR ERV1 -4470 1793 1642 2235 96 0 0 chr3 14154440 14154742 -203882416 - AluSx SINE Alu -10 302 1 26532 104 107 122 chr3 14154742 14155045 -203882113 - HUERS-P1 LTR ERV1 -4621 1642 1336 441 0 0 0 chr3 14155045 14155094 -203882064 + (GA)n Simple_repeat Simple_repeat 2 50 0 7077 109 65 27 chr3 14155079 14156093 -203881065 - HUERS-P1 LTR ERV1 -5027 1236 168 26532 104 107 122 chr3 14155094 14156079 -203881079 - HUERS-P1 LTR ERV1 -4927 1336 180 2397 69 0 23 chr3 14156093 14156397 -203880761 + AluY SINE Alu 1 297 -14 7077 109 65 27 chr3 14156397 14156572 -203880586 - HUERS-P1 LTR ERV1 -6095 168 1 3894 101 17 124 chr3 14156572 14156638 -203880520 - LTR8 LTR ERV1 0 691 620 2273 83 4 0 chr3 14156638 14156915 -203880243 + AluSp SINE Alu 3 280 -33 2611 49 0 10 chr3 14156916 14157221 -203879937 + AluY SINE Alu 1 302 -9 3894 101 17 124 chr3 14157221 14157839 -203879319 - LTR8 LTR ERV1 -71 620 95 6806 58 3 0 chr3 14157839 14158909 -203878249 + L1PA6 LINE L1 5079 6151 -3 3894 101 17 124 chr3 14158909 14158995 -203878163 - LTR8 LTR ERV1 -596 95 1 622 246 27 0 chr3 14159001 14159188 -203877970 + L1MC/D LINE L1 5254 5445 -725 * 856 213 127 8 chr3 14159179 14159447 -203877711 + L1ME1 LINE L1 5863 6162 -4 1694 184 4 0 chr3 14159502 14159814 -203877344 + AluJb SINE Alu 9 321 0 282 247 120 10 chr3 14159869 14160021 -203877137 + L1MC/D LINE L1 5428 5588 -609 2128 120 0 10 chr3 14160061 14160240 -203876918 - AluSx SINE Alu 0 312 136 2288 106 0 0 chr3 14160240 14160532 -203876626 - AluSq SINE Alu -21 292 1 2128 120 0 10 chr3 14160532 14160660 -203876498 - AluSx SINE Alu -176 136 8 1440 148 42 101 chr3 14160660 14160715 -203876443 - LTR54 LTR ERV1 -134 376 319 2399 77 0 26 chr3 14160715 14161026 -203876132 - AluY SINE Alu -8 303 1 1440 148 42 101 chr3 14161026 14161101 -203876057 - LTR54 LTR ERV1 -191 319 241 2149 126 0 40 chr3 14161101 14161426 -203875732 + AluSx SINE Alu 1 312 0 1440 148 42 101 chr3 14161426 14161673 -203875485 - LTR54 LTR ERV1 -269 241 19 1721 156 39 39 chr3 14161673 14161981 -203875177 - AluJb SINE Alu -4 308 1 1440 148 42 101 chr3 14161981 14161999 -203875159 - LTR54 LTR ERV1 -491 19 1 1947 154 0 7 chr3 14162074 14162379 -203874779 + AluJo SINE Alu 1 303 -9 632 224 51 67 chr3 14162591 14162904 -203874254 + L1MC5 LINE L1 7624 7931 -30 278 239 11 57 chr3 14162932 14163020 -203874138 + MIR SINE MIR 98 181 -81 2284 86 17 0 chr3 14163055 14163347 -203873811 - AluSg SINE Alu -13 297 1 2196 115 3 0 chr3 14163435 14163731 -203873427 - AluSx SINE Alu -15 297 1 293 263 13 13 chr3 14165239 14165315 -203871843 + MER5A DNA MER1_type 49 124 -65 2254 104 3 7 chr3 14165320 14165628 -203871530 - AluSx SINE Alu -5 307 1 1956 173 0 3 chr3 14165629 14165942 -203871216 - AluJo SINE Alu 0 312 1 420 106 91 0 chr3 14166137 14166203 -203870955 - HY1 scRNA scRNA -39 73 2 2060 118 3 20 chr3 14166214 14166372 -203870786 - AluSx SINE Alu -21 291 139 2337 94 0 3 chr3 14166372 14166669 -203870489 - AluSc SINE Alu -13 296 1 2060 118 3 20 chr3 14166669 14166806 -203870352 - AluSx SINE Alu -173 139 1 1039 162 241 9 chr3 14167022 14167250 -203869908 + AluSg1 SINE Alu 13 293 -16 1187 126 277 0 chr3 14167263 14167494 -203869664 + AluSx SINE Alu 1 295 -7 2226 97 10 3 chr3 14167494 14167792 -203869366 + AluSx SINE Alu 1 300 -12 196 329 52 58 chr3 14168464 14168619 -203868539 + MIR3 SINE MIR 1 154 -54 441 239 22 45 chr3 14168672 14168806 -203868352 + MIR SINE MIR 8 138 -124 263 250 269 0 chr3 14169300 14169408 -203867750 + MER5A DNA MER1_type 53 189 0 2106 97 49 7 chr3 14169635 14169923 -203867235 + AluSx SINE Alu 1 300 -12 1889 154 14 0 chr3 14170136 14170429 -203866729 - AluSx SINE Alu -15 297 1 200 35 35 0 chr3 14170480 14170509 -203866649 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1356 207 74 14 chr3 14170631 14170916 -203866242 - AluJo SINE Alu -6 306 5 283 236 14 28 chr3 14170983 14171055 -203866103 - MER5A DNA MER1_type -87 102 32 362 249 92 31 chr3 14171159 14171259 -203865899 - MIR SINE MIR -6 256 164 2250 90 0 23 chr3 14171259 14171560 -203865598 - AluSg SINE Alu -16 294 1 362 249 92 31 chr3 14171560 14171669 -203865489 - MIR SINE MIR -98 164 37 338 309 62 27 chr3 14172279 14172425 -203864733 + MIR SINE MIR 11 162 -46 1343 154 15 133 chr3 14172619 14172957 -203864201 + AluJb SINE Alu 1 298 -4 2282 96 7 0 chr3 14173153 14173454 -203863704 - AluSx SINE Alu -9 303 1 2292 105 3 7 chr3 14173969 14174273 -203862885 - AluSx SINE Alu -9 303 1 1802 145 84 10 chr3 14174925 14175236 -203861922 - MER1B DNA MER1_type 0 339 6 2091 109 0 4 chr3 14175532 14175808 -203861350 + AluSq SINE Alu 16 290 -23 319 243 215 35 chr3 14176305 14176449 -203860709 + MIR SINE MIR 32 201 -61 389 273 45 9 chr3 14176475 14176585 -203860573 - L2 LINE L2 -8 3305 3192 214 254 0 0 chr3 14176658 14176713 -203860445 - MIR SINE MIR -118 144 90 522 228 103 0 chr3 14177025 14177170 -203859988 - Charlie2 DNA MER1_type -2587 195 36 2549 58 0 13 chr3 14177214 14177525 -203859633 - AluY SINE Alu -4 307 1 2170 87 7 0 chr3 14177526 14177801 -203859357 - AluSx SINE Alu -35 277 1 365 208 47 28 chr3 14177931 14178037 -203859121 - MER103 DNA DNA -9 157 50 3445 85 42 24 chr3 14178204 14178714 -203858444 + L1MA3 LINE L1 5737 6259 -46 2392 87 7 0 chr3 14178714 14179012 -203858146 + AluSg SINE Alu 1 300 -10 3445 85 42 24 chr3 14179012 14179055 -203858103 + L1MA3 LINE L1 6259 6300 -5 1269 173 32 22 chr3 14179076 14179354 -203857804 + L1PA16 LINE L1 5886 6166 0 248 217 47 47 chr3 14179391 14179432 -203857726 + Charlie5 DNA MER1_type 58 98 -2526 2448 65 13 3 chr3 14179432 14179739 -203857419 - AluY SINE Alu -1 310 1 248 217 47 47 chr3 14179739 14179803 -203857355 + Charlie5 DNA MER1_type 97 163 -2461 2047 143 10 0 chr3 14179838 14180145 -203857013 - AluSx SINE Alu -2 310 1 555 172 106 0 chr3 14180152 14180303 -203856855 + Charlie5 DNA MER1_type 2354 2520 -92 310 292 78 62 chr3 14181945 14182176 -203854982 + MIR SINE MIR 18 247 -15 2378 86 0 7 chr3 14182570 14182871 -203854287 + AluSg SINE Alu 1 299 -11 206 362 0 0 chr3 14183448 14183506 -203853652 - MER5A DNA MER1_type -69 120 63 * 230 247 13 52 chr3 14183480 14183557 -203853601 + MER5B DNA MER1_type 102 175 -3 444 293 79 6 chr3 14184950 14185114 -203852044 - MIR SINE MIR -16 246 71 564 233 30 8 chr3 14185229 14185362 -203851796 - FLAM_C SINE Alu -5 138 3 1445 143 0 9 chr3 14185959 14186175 -203850983 - AluSg/x SINE Alu -20 292 79 185 250 0 23 chr3 14186713 14186757 -203850401 + MIR SINE MIR 90 132 -76 316 291 107 0 chr3 14187411 14187514 -203849644 + MIR SINE MIR 56 169 -93 432 82 0 0 chr3 14187629 14187690 -203849468 + (ATG)n Simple_repeat Simple_repeat 1 61 0 257 304 135 30 chr3 14187972 14188202 -203848956 + L1ME LINE L1 5560 5813 -308 904 122 23 0 chr3 14188218 14188349 -203848809 + AluJo SINE Alu 1 134 -178 2432 96 3 0 chr3 14188542 14188854 -203848304 + AluSp SINE Alu 1 313 0 297 274 263 11 chr3 14190218 14190397 -203846761 - MIR SINE MIR -18 244 21 281 323 57 16 chr3 14190505 14190629 -203846529 - MIR SINE MIR -9 253 125 267 280 54 42 chr3 14192277 14192445 -203844713 + L2 LINE L2 2890 3059 -213 292 274 18 35 chr3 14194132 14194245 -203842913 + L2 LINE L2 2716 2826 -488 2294 52 29 0 chr3 14194276 14194576 -203842582 + AluY SINE Alu 1 308 0 207 288 243 0 chr3 14194585 14194696 -203842462 + L2 LINE L2 2922 3059 -213 258 32 0 0 chr3 14194880 14194911 -203842247 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 197 309 117 11 chr3 14195222 14195316 -203841842 - L2 LINE L2 -237 3035 2932 234 0 0 0 chr3 14195385 14195411 -203841747 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 211 284 149 14 chr3 14195493 14195567 -203841591 + MIR SINE MIR 11 94 -168 25 0 0 0 chr3 14196645 14196670 -203840488 + GC_rich Low_complexity Low_complexity 1 25 0 603 272 136 0 chr3 14197577 14197768 -203839390 - MLT1K LTR MaLR -239 349 133 304 265 53 69 chr3 14197768 14197957 -203839201 + MER20B DNA MER1_type 1 186 -597 309 214 36 71 chr3 14200290 14200402 -203836756 - MER103 DNA DNA -50 116 9 2364 94 0 0 chr3 14200986 14201285 -203835873 + AluY SINE Alu 1 299 -12 808 156 0 0 chr3 14203267 14203376 -203833782 + FLAM_C SINE Alu 9 117 -26 400 286 49 79 chr3 14206585 14206788 -203830370 + MIR3 SINE MIR 7 203 -5 253 211 56 14 chr3 14206870 14206941 -203830217 - MER2 DNA MER2_type 0 345 272 729 150 55 123 chr3 14206973 14207071 -203830087 - MER2 DNA MER2_type -140 205 129 1732 185 123 10 chr3 14207071 14207461 -203829697 - Tigger2a DNA MER2_type 0 434 1 729 150 55 123 chr3 14207461 14207582 -203829576 - MER2 DNA MER2_type -216 129 1 284 260 57 51 chr3 14207627 14207865 -203829293 - MLT1K LTR MaLR -149 466 198 321 275 99 47 chr3 14207902 14208073 -203829085 + MIR SINE MIR 18 197 -65 731 206 8 0 chr3 14208074 14208200 -203828958 + FLAM_C SINE Alu 1 127 -16 305 55 0 96 chr3 14208205 14208278 -203828880 + (TGGA)n Simple_repeat Simple_repeat 3 68 0 1961 74 0 49 chr3 14209929 14210213 -203826945 + AluSq SINE Alu 1 270 -43 2298 66 10 13 chr3 14212600 14212902 -203824256 + AluSp SINE Alu 1 301 -12 289 362 53 32 chr3 14213200 14213388 -203823770 + MIR SINE MIR 4 195 -67 1844 116 47 4 chr3 14214521 14214796 -203822362 - AluSg SINE Alu -1 309 23 1453 148 168 0 chr3 14214997 14215253 -203821905 + AluJb SINE Alu 1 299 -13 228 297 14 153 chr3 14216305 14216440 -203820718 - MER5A DNA MER1_type -1 188 90 1861 132 35 14 chr3 14216440 14216729 -203820429 - AluSx SINE Alu -17 295 1 228 297 14 153 chr3 14216729 14216802 -203820356 - MER5A DNA MER1_type -99 90 9 480 293 98 6 chr3 14217058 14217232 -203819926 - MIR SINE MIR 0 262 73 26 30 0 0 chr3 14217482 14217515 -203819643 + GC_rich Low_complexity Low_complexity 1 33 0 223 186 0 34 chr3 14217597 14217656 -203819502 + (CCG)n Simple_repeat Simple_repeat 2 58 0 189 107 0 0 chr3 14219970 14219998 -203817160 + (TTTTC)n Simple_repeat Simple_repeat 5 32 0 * 245 109 22 0 chr3 14219993 14220039 -203817119 + CT-rich Low_complexity Low_complexity 2 48 0 210 318 16 0 chr3 14220130 14220193 -203816965 - L2 LINE L2 -3 3310 3247 1594 234 127 136 chr3 14220194 14220789 -203816369 - L2 LINE L2 -1 3312 2713 2479 80 0 0 chr3 14220789 14221100 -203816058 + AluY SINE Alu 1 311 0 1594 234 127 136 chr3 14221100 14221340 -203815818 - L2 LINE L2 -600 2713 2472 747 235 37 16 chr3 14221340 14221527 -203815631 + AluJo SINE Alu 121 311 -1 1594 234 127 136 chr3 14221527 14221657 -203815501 - L2 LINE L2 -841 2472 2342 1550 192 0 42 chr3 14221657 14221970 -203815188 - AluJo SINE Alu -12 300 1 1594 234 127 136 chr3 14221970 14222360 -203814798 - L2 LINE L2 -971 2342 1799 2382 41 3 7 chr3 14222360 14222652 -203814506 - AluY SINE Alu -20 291 1 1594 234 127 136 chr3 14222652 14222702 -203814456 - L2 LINE L2 -1514 1799 1750 2018 111 27 24 chr3 14222710 14223008 -203814150 + AluSq SINE Alu 1 299 -14 2460 57 0 7 chr3 14223011 14223312 -203813846 + AluY SINE Alu 1 299 -12 284 326 75 14 chr3 14223312 14223459 -203813699 + MIR SINE MIR 47 202 -60 361 249 93 78 chr3 14223462 14223495 -203813663 + MIR SINE MIR 2 33 -229 1911 141 0 10 chr3 14223495 14223793 -203813365 + AluJo SINE Alu 1 295 -17 361 249 93 78 chr3 14223793 14224016 -203813142 + MIR SINE MIR 33 262 0 700 222 0 7 chr3 14224860 14225004 -203812154 - FLAM_C SINE Alu 0 143 1 2357 82 3 0 chr3 14225100 14225404 -203811754 - AluSx SINE Alu -7 305 1 421 35 0 0 chr3 14225620 14225677 -203811481 - AluY SINE Alu -7 305 249 726 233 86 65 chr3 14225748 14225980 -203811178 - MIR SINE MIR -25 237 1 424 200 171 9 chr3 14226612 14226717 -203810441 + L2 LINE L2 3191 3312 -1 635 201 82 0 chr3 14226789 14226948 -203810210 - MIR SINE MIR -1 261 90 1022 124 162 5 chr3 14227346 14227531 -203809627 + AluJb SINE Alu 85 298 -14 2166 97 7 0 chr3 14228960 14229260 -203807898 + AluSx SINE Alu 1 302 -10 1479 154 15 133 chr3 14229456 14229794 -203807364 - AluJb SINE Alu -4 298 1 356 328 55 3 chr3 14229988 14230134 -203807024 - MIR SINE MIR -46 162 11 388 261 82 38 chr3 14230722 14230853 -203806305 + MIR SINE MIR 19 164 -98 2149 102 0 13 chr3 14230853 14231156 -203806002 + AluSg SINE Alu 1 299 -11 388 261 82 38 chr3 14231156 14231254 -203805904 + MIR SINE MIR 164 256 -6 289 236 14 28 chr3 14231358 14231430 -203805728 + MER5A DNA MER1_type 32 102 -87 1378 211 86 11 chr3 14231494 14231774 -203805384 + AluJo SINE Alu 2 302 0 1811 154 14 0 chr3 14231983 14232276 -203804882 + AluSx SINE Alu 1 297 -15 280 153 0 176 chr3 14232459 14232487 -203804671 - MIR SINE MIR -80 182 151 2125 100 28 0 chr3 14232487 14232778 -203804380 - AluSc SINE Alu -10 299 1 280 153 0 176 chr3 14232778 14232834 -203804324 - MIR SINE MIR -111 151 113 1468 234 122 142 chr3 14232876 14232940 -203804218 + L2 LINE L2 1751 1815 -1498 2369 45 3 7 chr3 14232940 14233232 -203803926 + AluY SINE Alu 1 291 -20 1468 234 122 142 chr3 14233232 14233622 -203803536 + L2 LINE L2 1815 2211 -1102 1550 192 0 42 chr3 14233622 14233935 -203803223 + AluJo SINE Alu 1 300 -12 1468 234 122 142 chr3 14233935 14234065 -203803093 + L2 LINE L2 2211 2342 -971 832 183 43 32 chr3 14234065 14234251 -203802907 - AluJo SINE Alu -4 308 121 1468 234 122 142 chr3 14234251 14234495 -203802663 + L2 LINE L2 2342 2589 -724 2524 71 0 0 chr3 14234495 14234805 -203802353 - AluY SINE Alu -1 310 1 1468 234 122 142 chr3 14234805 14235400 -203801758 + L2 LINE L2 2589 3312 -1 210 318 16 0 chr3 14235401 14235464 -203801694 + L2 LINE L2 3247 3310 -3 245 109 22 0 chr3 14235555 14235601 -203801557 + GA-rich Low_complexity Low_complexity 2 48 0 189 107 0 0 chr3 14235596 14235624 -203801534 + (GAAAA)n Simple_repeat Simple_repeat 5 32 0 * 223 186 0 34 chr3 14237938 14237997 -203799161 + (CGG)n Simple_repeat Simple_repeat 2 58 0 26 30 0 0 chr3 14238079 14238112 -203799046 + GC_rich Low_complexity Low_complexity 1 33 0 480 293 98 6 chr3 14238362 14238536 -203798622 + MIR SINE MIR 73 262 0 228 297 14 153 chr3 14238792 14238865 -203798293 + MER5A DNA MER1_type 9 90 -99 1861 132 35 14 chr3 14238865 14239154 -203798004 + AluSx SINE Alu 1 295 -17 228 297 14 153 chr3 14239154 14239289 -203797869 + MER5A DNA MER1_type 90 188 -1 1468 148 168 0 chr3 14240338 14240594 -203796564 - AluJb SINE Alu -13 299 1 1844 116 47 4 chr3 14240794 14241069 -203796089 + AluSg SINE Alu 23 309 -1 289 362 53 32 chr3 14242202 14242390 -203794768 - MIR SINE MIR -67 195 4 2298 66 10 13 chr3 14242688 14242990 -203794168 - AluSp SINE Alu -12 301 1 1961 74 0 49 chr3 14245377 14245661 -203791497 - AluSq SINE Alu -43 270 1 305 55 0 96 chr3 14247312 14247385 -203789773 + (TCCA)n Simple_repeat Simple_repeat 3 68 0 731 206 8 0 chr3 14247390 14247516 -203789642 - FLAM_C SINE Alu -16 127 1 310 281 99 47 chr3 14247517 14247688 -203789470 - MIR SINE MIR -65 197 18 284 260 57 51 chr3 14247725 14247963 -203789195 + MLT1K LTR MaLR 198 466 -149 729 150 55 123 chr3 14248008 14248129 -203789029 + MER2 DNA MER2_type 1 102 -243 1732 185 123 10 chr3 14248129 14248519 -203788639 + Tigger2a DNA MER2_type 1 434 0 729 150 55 123 chr3 14248519 14248617 -203788541 + MER2 DNA MER2_type 102 205 -140 283 214 57 0 chr3 14248649 14248719 -203788439 + MER2 DNA MER2_type 272 345 0 400 286 49 79 chr3 14248801 14249004 -203788154 - MIR3 SINE MIR -5 203 7 807 198 0 0 chr3 14252196 14252322 -203784836 - FLAM_C SINE Alu -9 134 9 2258 94 0 0 chr3 14254304 14254603 -203782555 - AluY SINE Alu -12 299 1 281 214 36 71 chr3 14255187 14255299 -203781859 + MER103 DNA DNA 9 116 -50 304 265 53 69 chr3 14257632 14257821 -203779337 - MER20B DNA MER1_type -597 186 1 603 272 136 0 chr3 14257821 14258012 -203779146 + MLT1K LTR MaLR 133 349 -239 25 0 0 0 chr3 14258919 14258944 -203778214 + GC_rich Low_complexity Low_complexity 1 25 0 211 284 149 14 chr3 14260022 14260096 -203777062 - MIR SINE MIR -168 94 11 234 0 0 0 chr3 14260178 14260204 -203776954 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 197 309 117 11 chr3 14260273 14260367 -203776791 + L2 LINE L2 2932 3035 -237 258 32 0 0 chr3 14260678 14260709 -203776449 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 207 288 243 0 chr3 14260893 14261004 -203776154 - L2 LINE L2 -213 3059 2922 2263 55 29 0 chr3 14261013 14261313 -203775845 - AluY SINE Alu 0 308 1 292 274 18 35 chr3 14261344 14261457 -203775701 - L2 LINE L2 -488 2826 2716 267 280 54 42 chr3 14263144 14263312 -203773846 - L2 LINE L2 -213 3059 2890 281 323 57 16 chr3 14264960 14265084 -203772074 + MIR SINE MIR 125 253 -9 297 274 263 11 chr3 14265192 14265371 -203771787 + MIR SINE MIR 21 244 -18 2432 96 3 0 chr3 14266735 14267047 -203770111 - AluSp SINE Alu 0 313 1 904 122 23 0 chr3 14267240 14267371 -203769787 - AluJo SINE Alu -178 134 1 232 309 135 30 chr3 14267387 14267617 -203769541 - L1ME LINE L1 -308 5813 5560 432 82 0 0 chr3 14267899 14267960 -203769198 + (CAT)n Simple_repeat Simple_repeat 1 61 0 316 291 107 0 chr3 14268075 14268178 -203768980 - MIR SINE MIR -93 169 56 185 250 0 23 chr3 14268832 14268876 -203768282 - MIR SINE MIR -76 132 90 1445 143 0 9 chr3 14269414 14269630 -203767528 + AluSg/x SINE Alu 79 292 -20 564 233 30 8 chr3 14270227 14270360 -203766798 + FLAM_C SINE Alu 3 138 -5 444 293 79 6 chr3 14270475 14270639 -203766519 + MIR SINE MIR 71 246 -16 230 247 13 52 chr3 14272032 14272109 -203765049 - MER5B DNA MER1_type -3 175 102 206 362 0 0 chr3 14272083 14272141 -203765017 + MER5A DNA MER1_type 63 120 -69 * 2378 86 0 7 chr3 14272718 14273019 -203764139 - AluSg SINE Alu -11 299 1 310 292 78 62 chr3 14273413 14273644 -203763514 - MIR SINE MIR -15 247 18 555 172 106 0 chr3 14275286 14275437 -203761721 - Charlie5 DNA MER1_type -92 2520 2354 2047 143 10 0 chr3 14275444 14275751 -203761407 + AluSx SINE Alu 1 310 -2 248 217 47 47 chr3 14275786 14275850 -203761308 - Charlie5 DNA MER1_type -2461 163 97 2457 65 13 3 chr3 14275850 14276158 -203761000 + AluY SINE Alu 1 311 0 248 217 47 47 chr3 14276158 14276199 -203760959 - Charlie5 DNA MER1_type -2526 98 58 1269 173 32 22 chr3 14276236 14276514 -203760644 - L1PA16 LINE L1 0 6166 5886 3445 85 42 24 chr3 14276535 14276578 -203760580 - L1MA3 LINE L1 -5 6300 6259 2392 87 7 0 chr3 14276578 14276876 -203760282 - AluSg SINE Alu -10 300 1 3445 85 42 24 chr3 14276876 14277386 -203759772 - L1MA3 LINE L1 -46 6259 5737 365 208 47 28 chr3 14277553 14277659 -203759499 + MER103 DNA DNA 50 157 -9 2170 87 7 0 chr3 14277789 14278064 -203759094 + AluSx SINE Alu 1 277 -35 2549 58 0 13 chr3 14278065 14278376 -203758782 + AluY SINE Alu 1 307 -4 522 228 103 0 chr3 14278420 14278565 -203758593 + Charlie2 DNA MER1_type 36 195 -2587 214 254 0 0 chr3 14278877 14278932 -203758226 + MIR SINE MIR 90 144 -118 389 273 45 9 chr3 14279005 14279115 -203758043 + L2 LINE L2 3192 3305 -8 319 243 215 35 chr3 14279141 14279285 -203757873 - MIR SINE MIR -61 201 32 2091 109 0 4 chr3 14279782 14280058 -203757100 - AluSq SINE Alu -23 290 16 1802 145 84 10 chr3 14280354 14280665 -203756493 + MER1B DNA MER1_type 6 339 0 2292 105 3 7 chr3 14281317 14281621 -203755537 + AluSx SINE Alu 1 303 -9 2274 97 7 0 chr3 14282136 14282436 -203754722 + AluSx SINE Alu 1 302 -10 1343 154 15 133 chr3 14282632 14282970 -203754188 - AluJb SINE Alu -4 298 1 338 309 62 27 chr3 14283164 14283310 -203753848 - MIR SINE MIR -46 162 11 362 249 92 31 chr3 14283920 14284029 -203753129 + MIR SINE MIR 37 138 -124 2250 90 0 23 chr3 14284029 14284330 -203752828 + AluSg SINE Alu 1 294 -16 362 249 92 31 chr3 14284330 14284430 -203752728 + MIR SINE MIR 138 256 -6 283 236 14 28 chr3 14284534 14284606 -203752552 + MER5A DNA MER1_type 32 102 -87 1356 207 74 14 chr3 14284673 14284958 -203752200 + AluJo SINE Alu 5 306 -6 200 35 35 0 chr3 14285080 14285109 -203752049 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1889 154 14 0 chr3 14285160 14285453 -203751705 + AluSx SINE Alu 1 297 -15 2233 97 28 0 chr3 14285666 14285955 -203751203 - AluSc SINE Alu -12 297 1 276 164 0 55 chr3 14285956 14286011 -203751147 - MIR SINE MIR -98 164 113 2299 80 0 10 chr3 14286117 14286406 -203750752 + AluSg SINE Alu 1 286 -24 231 36 0 0 chr3 14286406 14286434 -203750724 + (TA)n Simple_repeat Simple_repeat 2 29 0 411 285 44 61 chr3 14286476 14286704 -203750454 + L1MEc LINE L1 2173 2396 -4000 741 47 16 70 chr3 14286780 14286908 -203750250 - L1PA13 LINE L1 -1 6162 6042 1085 235 30 0 chr3 14287234 14287468 -203749690 + MIR SINE MIR 22 262 0 327 353 41 8 chr3 14287501 14287623 -203749535 - L2 LINE L2 -28 3244 3119 198 349 94 7 chr3 14287988 14288137 -203749021 - L2 LINE L2 -240 3032 2871 382 197 7 132 chr3 14288243 14288318 -203748840 + MIR SINE MIR 77 125 -137 2265 98 6 31 chr3 14288318 14288635 -203748523 - AluSx SINE Alu -3 309 1 382 197 7 132 chr3 14288635 14288711 -203748447 + MIR SINE MIR 125 209 -53 1793 175 3 16 chr3 14288922 14289225 -203747933 - AluJo SINE Alu -13 299 1 270 250 24 113 chr3 14289259 14289383 -203747775 + L2 LINE L2 2935 3047 -225 290 342 0 0 chr3 14289440 14289516 -203747642 + L2 LINE L2 3238 3313 0 2440 93 0 0 chr3 14289600 14289901 -203747257 + AluSx SINE Alu 1 301 -11 1712 163 54 0 chr3 14289960 14290254 -203746904 - AluJb SINE Alu -2 310 1 936 166 96 0 chr3 14290322 14290509 -203746649 + MER3 DNA MER1_type 1 205 -4 253 309 228 0 chr3 14290545 14290668 -203746490 + MIR3 SINE MIR 31 181 -27 294 309 196 33 chr3 14290842 14291130 -203746028 + L2 LINE L2 2738 2978 -335 450 0 0 0 chr3 14291130 14291180 -203745978 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 2246 102 0 0 chr3 14291180 14291463 -203745695 - AluSq SINE Alu -30 283 1 294 309 196 33 chr3 14291463 14291655 -203745503 + L2 LINE L2 2977 3304 -9 2299 125 0 0 chr3 14291659 14291963 -203745195 + AluSx SINE Alu 1 304 -8 398 300 0 0 chr3 14291986 14292076 -203745082 + L1MC4 LINE L1 6614 6703 -1339 392 286 0 11 chr3 14292036 14292127 -203745031 - L1MC4 LINE L1 -1339 6703 6614 * 387 267 0 11 chr3 14292083 14292173 -203744985 + L1MC4 LINE L1 6615 6703 -1339 * 2195 189 35 36 chr3 14292473 14292993 -203744165 - LTR40a LTR ERVL 0 519 1 305 221 39 39 chr3 14293212 14293316 -203743842 + MIR SINE MIR 81 184 -78 934 312 130 24 chr3 14293775 14294590 -203742568 - L2 LINE L2 -99 3214 2248 690 187 0 22 chr3 14294592 14294726 -203742432 + AluJo/FLAM SINE Alu 3 133 -169 2458 84 3 0 chr3 14294726 14295022 -203742136 + AluSp SINE Alu 1 297 -16 672 297 56 25 chr3 14295034 14295394 -203741764 - L2 LINE L2 -649 2665 2295 732 143 110 0 chr3 14295401 14295555 -203741603 + MIR SINE MIR 90 260 -2 216 293 13 0 chr3 14295570 14295645 -203741513 + (TA)n Simple_repeat Simple_repeat 1 76 0 2133 108 52 0 chr3 14297335 14297621 -203739537 - AluSx SINE Alu -11 301 1 451 302 43 0 chr3 14297693 14297832 -203739326 - MIR SINE MIR -92 170 26 808 156 0 0 chr3 14298871 14298980 -203738178 - FLAM_C SINE Alu -26 117 9 2364 94 0 0 chr3 14300964 14301263 -203735895 - AluY SINE Alu -12 299 1 309 214 36 71 chr3 14301847 14301959 -203735199 + MER103 DNA DNA 9 116 -50 304 265 53 69 chr3 14304292 14304481 -203732677 - MER20B DNA MER1_type -597 186 1 579 278 136 0 chr3 14304481 14304672 -203732486 + MLT1K LTR MaLR 133 349 -239 25 0 0 0 chr3 14305579 14305604 -203731554 + GC_rich Low_complexity Low_complexity 1 25 0 211 284 149 14 chr3 14306683 14306757 -203730401 - MIR SINE MIR -168 94 11 234 0 0 0 chr3 14306839 14306865 -203730293 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 197 309 117 11 chr3 14306934 14307028 -203730130 + L2 LINE L2 2932 3035 -237 258 32 0 0 chr3 14307339 14307370 -203729788 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 207 288 243 0 chr3 14307554 14307665 -203729493 - L2 LINE L2 -213 3059 2922 220 36 0 0 chr3 14307674 14307702 -203729456 + (TTTG)n Simple_repeat Simple_repeat 1 92 0 2263 55 29 0 chr3 14307702 14307974 -203729184 - AluY SINE Alu -31 280 1 292 274 18 35 chr3 14308005 14308118 -203729040 - L2 LINE L2 -488 2826 2716 267 280 54 42 chr3 14309805 14309973 -203727185 - L2 LINE L2 -213 3059 2890 281 323 57 16 chr3 14311621 14311745 -203725413 + MIR SINE MIR 125 253 -9 296 313 78 9 chr3 14311853 14311968 -203725190 + MIR SINE MIR 21 143 -119 2432 96 3 0 chr3 14313396 14313708 -203723450 - AluSp SINE Alu 0 313 1 904 122 23 0 chr3 14313901 14314032 -203723126 - AluJo SINE Alu -178 134 1 257 304 135 30 chr3 14314048 14314278 -203722880 - L1ME LINE L1 -308 5813 5560 432 82 0 0 chr3 14314560 14314621 -203722537 + (CAT)n Simple_repeat Simple_repeat 1 61 0 316 291 107 0 chr3 14314736 14314839 -203722319 - MIR SINE MIR -93 169 56 185 250 0 23 chr3 14315493 14315537 -203721621 - MIR SINE MIR -76 132 90 1445 143 0 9 chr3 14316075 14316291 -203720867 + AluSg/x SINE Alu 79 292 -20 564 233 30 8 chr3 14316888 14317021 -203720137 + FLAM_C SINE Alu 3 138 -5 444 293 79 6 chr3 14317136 14317300 -203719858 + MIR SINE MIR 71 246 -16 230 247 13 52 chr3 14318693 14318770 -203718388 - MER5B DNA MER1_type -3 175 102 206 362 0 0 chr3 14318744 14318802 -203718356 + MER5A DNA MER1_type 63 120 -69 * 2378 86 0 7 chr3 14319379 14319680 -203717478 - AluSg SINE Alu -11 299 1 310 292 78 62 chr3 14320074 14320305 -203716853 - MIR SINE MIR -15 247 18 555 172 106 0 chr3 14321947 14322098 -203715060 - Charlie5 DNA MER1_type -92 2520 2354 2012 143 10 3 chr3 14322105 14322413 -203714745 + AluSx SINE Alu 1 310 -2 248 217 47 47 chr3 14322448 14322512 -203714646 - Charlie5 DNA MER1_type -2461 163 97 2448 65 13 3 chr3 14322512 14322819 -203714339 + AluY SINE Alu 1 310 -1 248 217 47 47 chr3 14322819 14322860 -203714298 - Charlie5 DNA MER1_type -2526 98 58 1283 173 32 22 chr3 14322897 14323175 -203713983 - L1PA16 LINE L1 0 6166 5886 2343 88 10 0 chr3 14323239 14323536 -203713622 - AluSg SINE Alu -10 300 1 451 302 43 0 chr3 14323607 14323746 -203713412 - MIR SINE MIR -92 170 26 2349 90 10 3 chr3 14323810 14324110 -203713048 + AluSc SINE Alu 1 302 -7 638 224 0 7 chr3 14324207 14324350 -203712808 + FLAM_C SINE Alu 2 143 0 383 249 93 78 chr3 14325195 14325418 -203711740 - MIR SINE MIR 0 262 33 2005 141 0 10 chr3 14325418 14325716 -203711442 - AluJo SINE Alu -17 295 1 383 249 93 78 chr3 14325716 14325749 -203711409 - MIR SINE MIR -229 33 2 265 307 40 62 chr3 14325749 14325899 -203711259 - MIR SINE MIR -70 192 47 2584 57 0 7 chr3 14325899 14326200 -203710958 - AluY SINE Alu -12 299 1 2128 111 27 24 chr3 14326204 14326502 -203710656 - AluSq SINE Alu -14 299 1 2178 114 10 0 chr3 14326506 14326803 -203710355 - AluSx SINE Alu -12 300 1 406 35 0 0 chr3 14327019 14327076 -203710082 - AluY SINE Alu -7 305 249 715 233 86 65 chr3 14327147 14327379 -203709779 - MIR SINE MIR -25 237 1 413 188 178 10 chr3 14328015 14328116 -203709042 + L2 LINE L2 3195 3312 -1 655 201 82 0 chr3 14328188 14328347 -203708811 - MIR SINE MIR -1 261 90 1075 124 162 5 chr3 14328745 14328930 -203708228 + AluJb SINE Alu 85 298 -14 2466 62 0 3 chr3 14330451 14330743 -203706415 - AluSc SINE Alu -18 291 1 453 258 97 46 chr3 14331179 14331396 -203705762 + MIR SINE MIR 2 229 -33 393 247 17 0 chr3 14334867 14334976 -203702182 + MIR3 SINE MIR 84 196 -12 503 248 45 13 chr3 14336755 14336923 -203700235 + MIR3 SINE MIR 25 197 -48 184 261 43 43 chr3 14337816 14337885 -203699273 + MIR SINE MIR 16 84 -124 1532 61 0 0 chr3 14337915 14338096 -203699062 - AluY SINE Alu -11 300 120 183 280 40 0 chr3 14338404 14338454 -203698704 + L2 LINE L2 3221 3272 0 203 162 0 0 chr3 14339748 14339785 -203697373 + CT-rich Low_complexity Low_complexity 2 38 0 653 255 74 35 chr3 14340637 14340868 -203696290 - MIR SINE MIR -12 250 11 593 249 134 9 chr3 14341164 14341381 -203695777 - MIR SINE MIR -1 261 18 221 333 111 15 chr3 14341552 14341687 -203695471 + MIR SINE MIR 48 195 -67 858 206 126 23 chr3 14342018 14342232 -203694926 + MIR SINE MIR 25 260 -2 2484 77 13 0 chr3 14343265 14343565 -203693593 + AluSc SINE Alu 1 304 -5 491 263 78 39 chr3 14344166 14344257 -203692901 + MIR SINE MIR 10 96 -166 1928 146 36 3 chr3 14344257 14344559 -203692599 + AluJb SINE Alu 1 312 0 491 263 78 39 chr3 14344559 14344672 -203692486 + MIR SINE MIR 96 222 -40 212 323 173 19 chr3 14345536 14345796 -203691362 + L2 LINE L2 2503 2802 -512 440 271 167 21 chr3 14345915 14346196 -203690962 + L2 LINE L2 2951 3272 0 22 0 0 0 chr3 14347455 14347477 -203689681 + GC_rich Low_complexity Low_complexity 1 22 0 273 197 0 0 chr3 14347757 14347823 -203689335 + (CGG)n Simple_repeat Simple_repeat 3 68 0 211 301 0 58 chr3 14348189 14348345 -203688813 + G-rich Low_complexity Low_complexity 3 149 0 212 273 167 0 chr3 14348787 14348853 -203688305 + MIR SINE MIR 69 145 -117 672 244 6 18 chr3 14349146 14349314 -203687844 + MIR SINE MIR 97 262 0 496 278 163 47 chr3 14350134 14350583 -203686575 + L2 LINE L2 1710 2210 -1104 209 343 6 40 chr3 14350594 14350821 -203686337 + GA-rich Low_complexity Low_complexity 1 219 0 939 311 128 28 chr3 14350905 14350916 -203686242 + L2 LINE L2 2236 2244 -1069 2556 83 3 0 chr3 14350916 14351228 -203685930 - AluSp SINE Alu 0 313 1 690 187 0 22 chr3 14351228 14351362 -203685796 - AluJo/FLAM SINE Alu -169 133 3 939 311 128 28 chr3 14351362 14352179 -203684979 + L2 LINE L2 2243 3214 -99 305 221 39 39 chr3 14352638 14352742 -203684416 - MIR SINE MIR -78 184 81 2195 189 35 36 chr3 14352961 14353481 -203683677 + LTR40a LTR ERVL 1 519 0 387 267 0 11 chr3 14353781 14353871 -203683287 - L1MC4 LINE L1 -1339 6703 6615 * 392 286 0 11 chr3 14353827 14353918 -203683240 + L1MC4 LINE L1 6614 6703 -1339 * 398 300 0 0 chr3 14353878 14353968 -203683190 - L1MC4 LINE L1 -1339 6703 6614 2299 125 0 0 chr3 14353991 14354295 -203682863 - AluSx SINE Alu -8 304 1 294 309 196 33 chr3 14354299 14354491 -203682667 - L2 LINE L2 -9 3304 3145 2246 102 0 0 chr3 14354491 14354774 -203682384 + AluSq SINE Alu 1 283 -30 450 0 0 0 chr3 14354774 14354824 -203682334 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 294 309 196 33 chr3 14354824 14355112 -203682046 - L2 LINE L2 -167 3146 2738 253 309 228 0 chr3 14355286 14355409 -203681749 - MIR3 SINE MIR -27 181 31 951 160 96 0 chr3 14355445 14355632 -203681526 - MER3 DNA MER1_type -4 205 1 1712 163 54 0 chr3 14355700 14355994 -203681164 + AluJb SINE Alu 1 310 -2 2440 93 0 0 chr3 14356053 14356354 -203680804 - AluSx SINE Alu -11 301 1 290 342 0 0 chr3 14356438 14356514 -203680644 - L2 LINE L2 0 3313 3238 270 250 24 113 chr3 14356571 14356695 -203680463 - L2 LINE L2 -225 3047 2935 1793 175 3 16 chr3 14356729 14357032 -203680126 + AluJo SINE Alu 1 299 -13 382 197 7 132 chr3 14357243 14357319 -203679839 - MIR SINE MIR -53 209 160 2262 102 6 25 chr3 14357319 14357634 -203679524 + AluSx SINE Alu 1 309 -3 382 197 7 132 chr3 14357634 14357709 -203679449 - MIR SINE MIR -102 160 77 198 349 94 7 chr3 14357815 14357964 -203679194 + L2 LINE L2 2871 3032 -240 327 353 41 8 chr3 14358329 14358451 -203678707 + L2 LINE L2 3119 3244 -28 1085 235 30 0 chr3 14358484 14358718 -203678440 - MIR SINE MIR 0 262 22 743 54 8 70 chr3 14359044 14359173 -203677985 + L1PA13 LINE L1 6042 6162 -1 425 318 79 28 chr3 14359248 14359500 -203677658 - L1MEc LINE L1 -3999 2397 2133 231 36 0 0 chr3 14359519 14359547 -203677611 + (TA)n Simple_repeat Simple_repeat 2 29 0 2367 88 0 0 chr3 14359547 14359832 -203677326 - AluSg1 SINE Alu -24 285 1 649 277 47 47 chr3 14359883 14360136 -203677022 - MIR SINE MIR -5 257 5 852 170 50 0 chr3 14360237 14360396 -203676762 + MER2 DNA MER2_type 1 167 -178 1906 132 24 17 chr3 14360407 14360703 -203676455 + AluJo SINE Alu 1 298 -14 2266 115 0 10 chr3 14360725 14361038 -203676120 + AluSg SINE Alu 1 310 0 297 320 6 22 chr3 14361501 14361679 -203675479 + GA-rich Low_complexity Low_complexity 1 175 0 241 299 7 29 chr3 14361832 14361969 -203675189 + GA-rich Low_complexity Low_complexity 4 137 0 542 90 0 0 chr3 14362028 14362106 -203675052 + Alu SINE Alu 226 303 -9 2503 89 0 0 chr3 14362146 14362448 -203674710 - AluSx SINE Alu -10 302 1 242 264 0 0 chr3 14362753 14362806 -203674352 + L2 LINE L2 3209 3261 -11 330 349 15 0 chr3 14364807 14364939 -203672219 + (TGGA)n Simple_repeat Simple_repeat 2 135 0 311 250 9 0 chr3 14365000 14365116 -203672042 + (TGGA)n Simple_repeat Simple_repeat 2 118 0 317 340 10 0 chr3 14365129 14365229 -203671929 + (TGGG)n Simple_repeat Simple_repeat 2 102 0 2558 61 0 0 chr3 14365501 14365797 -203671361 + AluY SINE Alu 1 296 -15 2476 75 0 0 chr3 14366731 14367026 -203670132 - AluY SINE Alu -16 295 1 808 129 0 50 chr3 14367056 14367196 -203669962 + FLAM_C SINE Alu 1 133 0 404 252 28 0 chr3 14367264 14367371 -203669787 - MIR SINE MIR -75 187 78 1912 123 76 4 chr3 14367372 14367649 -203669509 + AluSx SINE Alu 1 297 -15 219 303 30 15 chr3 14368209 14368275 -203668883 - MER91A DNA MER1_type 0 196 130 618 200 77 0 chr3 14368720 14368850 -203668308 - MIR SINE MIR -34 228 89 304 179 0 119 chr3 14368857 14368913 -203668245 + MER116 DNA Mariner 3 47 -33 2249 93 0 13 chr3 14368913 14369213 -203667945 - AluSx SINE Alu -16 296 1 304 179 0 119 chr3 14369213 14369240 -203667918 + MER116 DNA Mariner 47 76 -4 1130 130 0 30 chr3 14369328 14369497 -203667661 - AluSg/x SINE Alu -15 297 134 2304 114 0 7 chr3 14369497 14369805 -203667353 - AluSx SINE Alu -6 306 1 2241 111 0 19 chr3 14369805 14370121 -203667037 - AluSx SINE Alu -2 310 1 197 184 0 161 chr3 14370197 14370284 -203666874 - MIR3 SINE MIR -133 75 3 * 229 303 73 18 chr3 14370256 14370298 -203666860 + L2 LINE L2 2946 2984 -288 2509 71 0 0 chr3 14370298 14370595 -203666563 - AluY SINE Alu -14 297 1 229 303 73 18 chr3 14370595 14370661 -203666497 + L2 LINE L2 2984 3060 -212 184 438 0 0 chr3 14370735 14370815 -203666343 + L2 LINE L2 3111 3190 -82 2341 88 7 10 chr3 14372228 14372535 -203664623 + AluY SINE Alu 1 306 -5 1730 77 0 9 chr3 14372540 14372762 -203664396 + AluSq SINE Alu 1 220 -93 325 114 0 0 chr3 14372763 14372807 -203664351 + AluSc SINE Alu 116 159 -140 699 83 0 28 chr3 14372807 14372915 -203664243 + AluSg/x SINE Alu 206 310 0 2569 68 0 3 chr3 14372926 14373235 -203663923 + AluY SINE Alu 1 308 -3 2484 80 0 6 chr3 14373242 14373554 -203663604 + AluY SINE Alu 1 310 -1 1342 211 73 35 chr3 14373563 14373932 -203663226 + L1MC4 LINE L1 7516 7898 -144 2022 146 0 0 chr3 14374341 14374622 -203662536 + AluSx SINE Alu 1 281 -31 2186 122 10 6 chr3 14374624 14374935 -203662223 + AluSx SINE Alu 1 312 0 242 304 69 65 chr3 14374939 14375186 -203661972 - L1ME4a LINE L1 -187 5934 5687 191 286 0 0 chr3 14375716 14375765 -203661393 - L2 LINE L2 -11 3261 3213 540 284 83 61 chr3 14375769 14375970 -203661188 + MLT1J1 LTR MaLR 1 213 -233 2522 74 0 10 chr3 14375970 14376280 -203660878 - AluY SINE Alu -4 307 1 540 284 83 61 chr3 14376280 14376405 -203660753 + MLT1J1 LTR MaLR 213 334 -112 187 274 53 80 chr3 14376468 14376581 -203660577 - MIR SINE MIR -72 136 27 * 241 299 259 6 chr3 14376537 14376711 -203660447 + MIR SINE MIR 19 236 -26 424 257 118 0 chr3 14376722 14376866 -203660292 + L1ME3A LINE L1 5978 6138 -32 217 299 19 58 chr3 14377824 14377978 -203659180 - L2 LINE L2 -181 3091 2944 2626 56 0 0 chr3 14378283 14378586 -203658572 - AluY SINE Alu -8 303 1 1197 178 82 10 chr3 14378586 14378889 -203658269 - L1MB8 LINE L1 -211 5967 5643 228 182 0 0 chr3 14378893 14378937 -203658221 + (TA)n Simple_repeat Simple_repeat 1 44 0 623 200 0 23 chr3 14378948 14379078 -203658080 - FLAM_A SINE Alu 0 142 16 205 71 24 48 chr3 14379216 14379258 -203657900 + (TAAAAA)n Simple_repeat Simple_repeat 2 42 0 2432 97 0 3 chr3 14379315 14379625 -203657533 - AluSx SINE Alu -3 309 1 242 264 0 0 chr3 14379930 14379983 -203657175 + L2 LINE L2 3209 3261 -11 330 349 15 0 chr3 14381984 14382116 -203655042 + (TGGA)n Simple_repeat Simple_repeat 2 135 0 311 250 9 0 chr3 14382177 14382293 -203654865 + (TGGA)n Simple_repeat Simple_repeat 2 118 0 317 340 10 0 chr3 14382306 14382406 -203654752 + (TGGG)n Simple_repeat Simple_repeat 2 102 0 2558 61 0 0 chr3 14382678 14382974 -203654184 + AluY SINE Alu 1 296 -15 2476 75 0 0 chr3 14383910 14384205 -203652953 - AluY SINE Alu -16 295 1 808 129 0 50 chr3 14384235 14384375 -203652783 + FLAM_C SINE Alu 1 133 0 404 252 28 0 chr3 14384443 14384550 -203652608 - MIR SINE MIR -75 187 78 1912 123 76 4 chr3 14384551 14384828 -203652330 + AluSx SINE Alu 1 297 -15 219 303 30 15 chr3 14385388 14385454 -203651704 - MER91A DNA MER1_type 0 196 130 618 200 77 0 chr3 14385899 14386029 -203651129 - MIR SINE MIR -34 228 89 304 179 0 119 chr3 14386036 14386092 -203651066 + MER116 DNA Mariner 3 47 -33 2214 93 0 17 chr3 14386092 14386393 -203650765 - AluSx SINE Alu -16 296 1 304 179 0 119 chr3 14386393 14386420 -203650738 + MER116 DNA Mariner 47 76 -4 1130 130 0 30 chr3 14386508 14386677 -203650481 - AluSg/x SINE Alu -15 295 132 2304 114 0 7 chr3 14386677 14386985 -203650173 - AluSx SINE Alu -6 306 1 2135 119 0 16 chr3 14386985 14387177 -203649981 - AluSx SINE Alu -2 310 123 198 118 0 0 chr3 14387177 14387211 -203649947 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2135 119 0 16 chr3 14387211 14387329 -203649829 - AluSx SINE Alu -189 123 5 1838 173 0 17 chr3 14387550 14387851 -203649307 - AluJo SINE Alu -16 296 1 287 217 17 0 chr3 14387881 14387941 -203649217 - MIR SINE MIR -70 138 78 261 271 54 47 chr3 14388450 14388579 -203648579 - L2 LINE L2 -51 3262 3133 589 341 57 0 chr3 14388589 14388658 -203648500 - MIR SINE MIR -3 259 195 1952 137 0 44 chr3 14388658 14388827 -203648331 - AluSx SINE Alu -11 301 151 2133 91 31 11 chr3 14388827 14389113 -203648045 - AluSx SINE Alu -18 294 3 1952 137 0 44 chr3 14389113 14389258 -203647900 - AluSx SINE Alu -161 151 1 589 341 57 0 chr3 14389258 14389417 -203647741 - MIR SINE MIR -67 195 18 1006 295 167 16 chr3 14389455 14390428 -203646730 - L2 LINE L2 -263 3009 1879 186 143 0 0 chr3 14390522 14390557 -203646601 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 284 284 62 52 chr3 14391843 14392037 -203645121 - L2 LINE L2 -215 3057 2862 353 234 156 16 chr3 14392261 14392389 -203644769 - MIR SINE MIR -111 151 6 929 149 106 72 chr3 14392882 14393090 -203644068 + AluJb SINE Alu 33 247 -65 304 282 113 8 chr3 14393510 14393634 -203643524 - MIR SINE MIR -85 177 41 591 208 28 71 chr3 14393668 14393880 -203643278 + MER3 DNA MER1_type 2 204 -5 220 301 97 44 chr3 14393891 14394004 -203643154 + MIR3 SINE MIR 66 184 -24 207 69 0 0 chr3 14394810 14394839 -203642319 + (A)n Simple_repeat Simple_repeat 1 29 0 427 300 246 29 chr3 14395644 14395924 -203641234 + MER102b DNA MER1_type 1 341 0 406 303 86 0 chr3 14395950 14396112 -203641046 + MIR SINE MIR 31 206 -56 532 264 120 37 chr3 14396283 14396499 -203640659 - MIR SINE MIR -20 242 9 488 320 115 24 chr3 14397770 14398101 -203639057 + L3 LINE CR1 1145 1505 -72 2101 50 0 0 chr3 14398164 14398402 -203638756 + AluY SINE Alu 1 238 -73 1778 89 46 19 chr3 14398413 14398672 -203638486 + AluSq SINE Alu 35 300 -13 2610 54 0 0 chr3 14398672 14398967 -203638191 + AluY SINE Alu 1 295 -16 2558 61 0 0 chr3 14399901 14400197 -203636961 - AluY SINE Alu -15 296 1 317 340 10 0 chr3 14400469 14400569 -203636589 + (CCCA)n Simple_repeat Simple_repeat 2 102 0 311 250 9 0 chr3 14400582 14400698 -203636460 + (TCCA)n Simple_repeat Simple_repeat 2 118 0 330 349 15 0 chr3 14400759 14400891 -203636267 + (TCCA)n Simple_repeat Simple_repeat 2 135 0 242 264 0 0 chr3 14402892 14402945 -203634213 - L2 LINE L2 -11 3261 3209 2503 89 0 0 chr3 14403250 14403552 -203633606 + AluSx SINE Alu 1 302 -10 459 161 0 0 chr3 14403592 14403673 -203633485 - AluJ/FRAM SINE Alu -7 305 225 293 359 20 20 chr3 14404465 14404660 -203632498 + L2 LINE L2 3118 3312 -1 2153 114 6 19 chr3 14404945 14405260 -203631898 + AluSp SINE Alu 3 313 0 2178 108 3 54 chr3 14405264 14405580 -203631578 + AluSp SINE Alu 2 301 -12 732 221 7 0 chr3 14405599 14405744 -203631414 - MIR SINE MIR -12 250 105 340 259 46 56 chr3 14405764 14405872 -203631286 - L2 LINE L2 -49 3223 3117 272 298 62 28 chr3 14405856 14405880 -203631278 + L2 LINE L2 3128 3150 -163 * 2214 131 0 0 chr3 14405880 14406171 -203630987 - AluSq SINE Alu -22 291 1 272 298 62 28 chr3 14406171 14406324 -203630834 + L2 LINE L2 3150 3311 -2 220 376 24 0 chr3 14406428 14406553 -203630605 - L2 LINE L2 -470 2844 2717 2062 105 25 7 chr3 14406698 14406983 -203630175 + AluSx SINE Alu 14 303 -9 1318 213 56 39 chr3 14406991 14407292 -203629866 + L1ME1 LINE L1 5767 6061 -105 1035 182 0 0 chr3 14407292 14407462 -203629696 - FAM SINE Alu -5 170 1 1318 213 56 39 chr3 14407462 14407477 -203629681 + L1ME1 LINE L1 6061 6074 -92 2435 76 0 0 chr3 14407477 14407768 -203629390 - AluY SINE Alu -20 291 1 1318 213 56 39 chr3 14407768 14407807 -203629351 + L1ME1 LINE L1 6074 6129 -37 215 261 57 11 chr3 14408086 14408174 -203628984 - L2 LINE L2 -1077 2237 2146 472 194 20 0 chr3 14409704 14409802 -203627356 - MIR SINE MIR -32 230 131 580 293 0 7 chr3 14409831 14409978 -203627180 - MIR SINE MIR -106 156 11 384 316 130 9 chr3 14410139 14410354 -203626804 + MIR SINE MIR 2 242 -20 661 267 21 69 chr3 14411096 14411336 -203625822 + MIR SINE MIR 30 259 -3 249 336 80 8 chr3 14411351 14411476 -203625682 - L2 LINE L2 -1 3312 3179 211 246 46 31 chr3 14411859 14411924 -203625234 - L2 LINE L2 -250 3022 2957 2084 121 3 3 chr3 14412850 14413156 -203624002 + AluSx SINE Alu 1 306 -6 1904 132 0 7 chr3 14413161 14413441 -203623717 + AluSx SINE Alu 16 293 -19 2409 66 0 0 chr3 14413441 14413744 -203623414 + AluY SINE Alu 1 303 -8 427 257 118 0 chr3 14415161 14415305 -203621853 - L1ME3A LINE L1 -32 6138 5978 257 299 259 6 chr3 14415316 14415490 -203621668 - MIR SINE MIR -26 236 19 195 292 46 85 chr3 14415446 14415576 -203621582 + MIR SINE MIR 27 151 -57 * 593 297 73 52 chr3 14415622 14415747 -203621411 - MLT1J1 LTR MaLR -112 334 213 2373 74 0 10 chr3 14415747 14416057 -203621101 + AluY SINE Alu 1 307 -4 593 297 73 52 chr3 14416057 14416258 -203620900 - MLT1J1 LTR MaLR -233 213 1 198 286 0 0 chr3 14416262 14416311 -203620847 + L2 LINE L2 3213 3261 -11 283 313 54 71 chr3 14416825 14417092 -203620066 + L1ME4a LINE L1 5670 5931 -190 2221 109 3 0 chr3 14417092 14417404 -203619754 - AluSq SINE Alu 0 313 1 283 313 54 71 chr3 14417404 14417472 -203619686 + L1ME4a LINE L1 5931 5999 -122 24 32 0 0 chr3 14417496 14417527 -203619631 + AT_rich Low_complexity Low_complexity 1 31 0 242 267 50 75 chr3 14418046 14418166 -203618992 + MER5B DNA MER1_type 7 123 -55 2380 65 0 7 chr3 14418185 14418492 -203618666 - AluY SINE Alu -6 305 1 811 110 0 0 chr3 14418543 14418652 -203618506 + AluSp/q SINE Alu 176 284 -29 406 196 28 9 chr3 14418652 14418759 -203618399 - L1MB2 LINE L1 -16 6155 6047 240 280 10 0 chr3 14418784 14418884 -203618274 - L1MC4 LINE L1 -1 8041 7941 1225 102 0 0 chr3 14419181 14419347 -203617811 - AluSg/x SINE Alu -14 296 131 508 325 93 0 chr3 14419502 14419696 -203617462 - MIR SINE MIR 0 262 51 1797 148 20 10 chr3 14419850 14420155 -203617003 + AluJo SINE Alu 1 308 -4 256 347 75 0 chr3 14420187 14420334 -203616824 + MIR3 SINE MIR 40 197 -11 429 250 191 0 chr3 14420481 14420633 -203616525 + MIR SINE MIR 11 191 -71 219 125 0 0 chr3 14420649 14420689 -203616469 + (TG)n Simple_repeat Simple_repeat 2 41 0 746 175 8 0 chr3 14420702 14420822 -203616336 - FLAM_C SINE Alu -12 121 1 755 118 8 39 chr3 14420833 14420844 -203616314 - L1MC1 LINE L1 0 6333 6323 1622 168 35 3 chr3 14420844 14421129 -203616029 - AluJo SINE Alu -18 294 1 755 118 8 39 chr3 14421129 14421244 -203615914 - L1MC1 LINE L1 -10 6323 6211 443 317 76 51 chr3 14422168 14422321 -203614837 - MLT1L LTR MaLR -10 605 457 1236 33 26 0 chr3 14422321 14422473 -203614685 - L1PA5 LINE L1 0 6154 5999 443 317 76 51 chr3 14422473 14422749 -203614409 - MLT1L LTR MaLR -158 457 176 187 311 0 14 chr3 14423018 14423092 -203614066 - L2 LINE L2 -213 3059 2987 913 303 133 25 chr3 14423107 14423579 -203613579 + MLT1K LTR MaLR 56 578 -10 499 201 148 58 chr3 14423807 14423996 -203613162 - MIR SINE MIR -26 236 31 416 235 41 0 chr3 14424010 14424108 -203613050 - MER91C DNA MER1_type -38 102 1 276 369 76 0 chr3 14424378 14424535 -203612623 - MIR SINE MIR -14 248 80 2579 48 0 0 chr3 14425297 14425608 -203611550 + AluY SINE Alu 1 311 0 318 285 180 48 chr3 14425627 14425933 -203611225 - L2 LINE L2 -159 3113 2763 791 181 30 91 chr3 14425933 14426047 -203611111 + MER5A DNA MER1_type 1 99 -90 2198 95 7 0 chr3 14426047 14426342 -203610816 + AluSx SINE Alu 1 297 -15 791 181 30 91 chr3 14426342 14426426 -203610732 + MER5A DNA MER1_type 99 187 -2 318 285 180 48 chr3 14426426 14426467 -203610691 - L2 LINE L2 -509 2763 2729 1918 108 38 14 chr3 14426718 14427006 -203610152 - AluSx SINE Alu -4 308 14 599 317 37 17 chr3 14427034 14427341 -203609817 - L1ME LINE L1 -422 5699 5373 318 256 174 12 chr3 14427349 14427521 -203609637 - L1ME LINE L1 -801 5345 5146 2154 115 3 0 chr3 14427553 14427858 -203609300 - AluSx SINE Alu -6 306 1 1457 166 3 48 chr3 14427992 14428305 -203608853 + AluJb SINE Alu 13 312 0 2179 79 0 52 chr3 14428411 14428739 -203608419 - AluY SINE Alu 0 311 1 1830 131 0 0 chr3 14428741 14429000 -203608158 - AluSx SINE Alu -13 299 41 305 192 26 13 chr3 14429073 14429151 -203608007 + L1ME4a LINE L1 5946 6024 -97 244 228 38 25 chr3 14429600 14429679 -203607479 + MLT1K LTR MaLR 497 576 -12 2297 87 7 3 chr3 14429869 14430179 -203606979 + AluSx SINE Alu 1 311 -1 313 313 90 0 chr3 14430456 14430590 -203606568 - MIR SINE MIR -31 231 86 2001 139 13 3 chr3 14430662 14431012 -203606146 + AluJo SINE Alu 1 353 0 278 290 93 0 chr3 14431728 14431835 -203605323 + MIR SINE MIR 27 143 -119 227 250 0 0 chr3 14432719 14432783 -203604375 + (TG)n Simple_repeat Simple_repeat 2 65 0 180 77 0 0 chr3 14433960 14433986 -203603172 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 224 220 44 11 chr3 14434049 14434140 -203603018 + (TGAA)n Simple_repeat Simple_repeat 1 94 0 573 279 118 60 chr3 14434630 14435210 -203601948 - L2 LINE L2 -45 3227 2612 298 289 240 0 chr3 14435388 14435492 -203601666 - MER5A DNA MER1_type 0 189 61 250 247 68 14 chr3 14435505 14435578 -203601580 - MER5A DNA MER1_type -82 107 31 1310 217 173 8 chr3 14435610 14435974 -203601184 - MLT1K LTR MaLR -43 545 122 325 299 31 0 chr3 14436303 14436400 -203600758 + MIR SINE MIR 89 188 -74 2191 80 28 0 chr3 14436748 14437034 -203600124 - AluSx SINE Alu -14 298 5 269 261 15 0 chr3 14437057 14437122 -203600036 - MIR SINE MIR -85 123 58 1636 83 4 18 chr3 14437146 14437375 -203599783 + AluSp SINE Alu 88 313 0 2040 108 3 54 chr3 14437379 14437695 -203599463 + AluSp SINE Alu 2 301 -12 736 221 7 0 chr3 14437714 14437859 -203599299 - MIR SINE MIR -12 250 105 328 259 46 56 chr3 14437879 14437987 -203599171 - L2 LINE L2 -49 3223 3117 2111 120 0 0 chr3 14437995 14438286 -203598872 - AluSq SINE Alu -22 291 1 1021 152 11 43 chr3 14438567 14438751 -203598407 - FAM SINE Alu -7 42 1 228 266 16 0 chr3 14439137 14439201 -203597957 + MIR SINE MIR 79 143 -119 259 248 25 93 chr3 14439296 14439325 -203597833 - L1ME4a LINE L1 -1 6120 6091 1819 115 38 54 chr3 14439325 14439639 -203597519 + AluSq SINE Alu 1 309 -4 259 248 25 93 chr3 14439639 14439770 -203597388 - L1ME4a LINE L1 -30 6091 5971 541 293 87 5 chr3 14439775 14439983 -203597175 + MIR SINE MIR 20 244 -18 181 194 16 16 chr3 14440587 14440649 -203596509 + CT-rich Low_complexity Low_complexity 1 62 0 1056 235 81 46 chr3 14440671 14441105 -203596053 - L2 LINE L2 -20 3293 2845 2305 88 0 10 chr3 14441729 14442036 -203595122 - AluSg1 SINE Alu -5 304 1 852 335 82 17 chr3 14442862 14443067 -203594091 - L2 LINE L2 -407 2907 2717 2155 121 0 0 chr3 14443067 14443365 -203593793 + AluSx SINE Alu 1 298 -14 852 335 82 17 chr3 14443365 14443735 -203593423 - L2 LINE L2 -597 2717 2295 725 143 110 0 chr3 14443742 14443896 -203593262 + MIR SINE MIR 90 260 -2 216 293 13 0 chr3 14443911 14443986 -203593172 + (TA)n Simple_repeat Simple_repeat 1 76 0 2004 108 52 0 chr3 14445676 14445962 -203591196 - AluSx SINE Alu -11 301 1 455 318 47 0 chr3 14446025 14446173 -203590985 - MIR SINE MIR -82 180 26 2211 90 10 3 chr3 14446237 14446537 -203590621 + AluSc SINE Alu 1 302 -7 696 224 0 7 chr3 14446634 14446777 -203590381 + FLAM_C SINE Alu 2 143 0 359 245 93 78 chr3 14447621 14447844 -203589314 - MIR SINE MIR 0 262 33 1880 141 0 10 chr3 14447844 14448142 -203589016 - AluJo SINE Alu -17 295 1 359 245 93 78 chr3 14448142 14448175 -203588983 - MIR SINE MIR -229 33 2 270 326 75 14 chr3 14448178 14448325 -203588833 - MIR SINE MIR -60 202 47 2437 57 0 7 chr3 14448325 14448626 -203588532 - AluY SINE Alu -12 299 1 1998 111 27 24 chr3 14448629 14448927 -203588231 - AluSq SINE Alu -14 299 1 2051 114 10 0 chr3 14448931 14449228 -203587930 - AluSx SINE Alu -12 300 1 428 35 0 0 chr3 14449444 14449501 -203587657 - AluY SINE Alu -7 305 249 716 233 86 65 chr3 14449572 14449804 -203587354 - MIR SINE MIR -25 237 1 414 188 178 10 chr3 14450440 14450541 -203586617 + L2 LINE L2 3195 3312 -1 646 201 82 0 chr3 14450613 14450772 -203586386 - MIR SINE MIR -1 261 90 998 124 162 5 chr3 14451170 14451355 -203585803 + AluJb SINE Alu 85 298 -14 2329 62 0 3 chr3 14452876 14453168 -203583990 - AluSc SINE Alu -18 291 1 462 313 65 14 chr3 14453604 14453821 -203583337 + MIR SINE MIR 2 229 -33 397 247 17 0 chr3 14457292 14457401 -203579757 + MIR3 SINE MIR 84 196 -12 510 248 45 13 chr3 14459180 14459348 -203577810 + MIR3 SINE MIR 25 197 -48 191 261 43 43 chr3 14460241 14460310 -203576848 + MIR SINE MIR 16 84 -124 1532 61 0 0 chr3 14460340 14460521 -203576637 - AluY SINE Alu -11 300 120 183 280 40 0 chr3 14460829 14460879 -203576279 + L2 LINE L2 3221 3272 0 203 162 0 0 chr3 14462173 14462210 -203574948 + CT-rich Low_complexity Low_complexity 2 38 0 653 255 74 35 chr3 14463062 14463293 -203573865 - MIR SINE MIR -12 250 11 593 249 134 9 chr3 14463589 14463806 -203573352 - MIR SINE MIR -1 261 18 221 333 111 15 chr3 14463977 14464112 -203573046 + MIR SINE MIR 48 195 -67 858 206 126 23 chr3 14464443 14464657 -203572501 + MIR SINE MIR 25 260 -2 2475 77 13 0 chr3 14465690 14465989 -203571169 + AluSc SINE Alu 1 303 -6 491 263 78 39 chr3 14466590 14466681 -203570477 + MIR SINE MIR 10 96 -166 1928 146 36 3 chr3 14466681 14466983 -203570175 + AluJb SINE Alu 1 312 0 491 263 78 39 chr3 14466983 14467096 -203570062 + MIR SINE MIR 96 222 -40 212 323 173 19 chr3 14467960 14468220 -203568938 + L2 LINE L2 2503 2802 -512 440 271 167 21 chr3 14468339 14468620 -203568538 + L2 LINE L2 2951 3272 0 22 0 0 0 chr3 14469879 14469901 -203567257 + GC_rich Low_complexity Low_complexity 1 22 0 273 197 0 0 chr3 14470181 14470247 -203566911 + (CGG)n Simple_repeat Simple_repeat 3 68 0 211 301 0 58 chr3 14470613 14470769 -203566389 + G-rich Low_complexity Low_complexity 3 149 0 212 273 167 0 chr3 14471211 14471277 -203565881 + MIR SINE MIR 69 145 -117 655 250 6 18 chr3 14471570 14471738 -203565420 + MIR SINE MIR 97 262 0 496 278 163 47 chr3 14472558 14473007 -203564151 + L2 LINE L2 1710 2210 -1104 209 343 6 40 chr3 14473018 14473245 -203563913 + GA-rich Low_complexity Low_complexity 1 219 0 939 311 128 28 chr3 14473329 14473340 -203563818 + L2 LINE L2 2236 2244 -1069 2556 83 3 0 chr3 14473340 14473652 -203563506 - AluSp SINE Alu 0 313 1 690 187 0 22 chr3 14473652 14473786 -203563372 - AluJo/FLAM SINE Alu -169 133 3 939 311 128 28 chr3 14473786 14474603 -203562555 + L2 LINE L2 2243 3214 -99 305 221 39 39 chr3 14475062 14475166 -203561992 - MIR SINE MIR -78 184 81 2195 189 35 36 chr3 14475385 14475905 -203561253 + LTR40a LTR ERVL 1 519 0 311 152 76 15 chr3 14476206 14476272 -203560886 - L1MCa LINE L1 -4362 2064 1995 * 387 277 40 0 chr3 14476246 14476347 -203560811 - L1MC4 LINE L1 -1323 6999 6895 369 326 0 0 chr3 14476306 14476395 -203560763 + L1MC4 LINE L1 6614 6702 -1340 * 336 238 0 0 chr3 14476366 14476429 -203560729 - L1MC4 LINE L1 -1339 6703 6641 * 2345 105 0 0 chr3 14476437 14476741 -203560417 - AluSx SINE Alu -8 304 1 8752 107 73 27 chr3 14476742 14477044 -203560114 - HUERS-P1 LTR ERV1 -4717 1546 1259 495 0 0 0 chr3 14477044 14477099 -203560059 + (GA)n Simple_repeat Simple_repeat 2 56 0 8752 107 73 27 chr3 14477099 14478098 -203559060 - HUERS-P1 LTR ERV1 -5004 1259 166 2397 69 0 23 chr3 14478098 14478402 -203558756 + AluY SINE Alu 1 297 -14 8752 107 73 27 chr3 14478402 14478577 -203558581 - HUERS-P1 LTR ERV1 -6097 166 1 3894 101 17 124 chr3 14478577 14478643 -203558515 - LTR8 LTR ERV1 0 691 620 2273 83 4 0 chr3 14478643 14478920 -203558238 + AluSp SINE Alu 3 280 -33 2611 49 0 10 chr3 14478921 14479226 -203557932 + AluY SINE Alu 1 302 -9 3894 101 17 124 chr3 14479226 14479844 -203557314 - LTR8 LTR ERV1 -71 620 95 6806 58 3 0 chr3 14479844 14480914 -203556244 + L1PA6 LINE L1 5079 6151 -3 3894 101 17 124 chr3 14480914 14481000 -203556158 - LTR8 LTR ERV1 -596 95 1 622 246 27 0 chr3 14481006 14481193 -203555965 + L1MC/D LINE L1 5254 5445 -725 * 856 213 127 8 chr3 14481184 14481452 -203555706 + L1ME1 LINE L1 5863 6162 -4 1701 184 4 0 chr3 14481507 14481813 -203555345 + AluJo SINE Alu 9 315 0 282 247 120 10 chr3 14481868 14482020 -203555138 + L1MC/D LINE L1 5428 5588 -609 2128 120 0 10 chr3 14482060 14482239 -203554919 - AluSx SINE Alu 0 312 136 2249 113 0 0 chr3 14482239 14482531 -203554627 - AluSq SINE Alu -21 292 1 2128 120 0 10 chr3 14482531 14482659 -203554499 - AluSx SINE Alu -176 136 8 1440 148 42 101 chr3 14482659 14482714 -203554444 - LTR54 LTR ERV1 -134 376 319 2399 77 0 26 chr3 14482714 14483025 -203554133 - AluY SINE Alu -8 303 1 1440 148 42 101 chr3 14483025 14483100 -203554058 - LTR54 LTR ERV1 -191 319 241 2149 126 0 40 chr3 14483100 14483425 -203553733 + AluSx SINE Alu 1 312 0 1440 148 42 101 chr3 14483425 14483672 -203553486 - LTR54 LTR ERV1 -269 241 19 1721 156 39 39 chr3 14483672 14483980 -203553178 - AluJb SINE Alu -4 308 1 1440 148 42 101 chr3 14483980 14483998 -203553160 - LTR54 LTR ERV1 -491 19 1 1931 157 0 7 chr3 14484073 14484378 -203552780 + AluJo SINE Alu 1 303 -9 632 224 51 67 chr3 14484590 14484903 -203552255 + L1MC5 LINE L1 7624 7931 -30 278 239 11 57 chr3 14484931 14485019 -203552139 + MIR SINE MIR 98 181 -81 2284 86 17 0 chr3 14485054 14485346 -203551812 - AluSg SINE Alu -13 297 1 2196 115 3 0 chr3 14485434 14485730 -203551428 - AluSx SINE Alu -15 297 1 293 263 13 13 chr3 14487238 14487314 -203549844 + MER5A DNA MER1_type 49 124 -65 2245 104 3 7 chr3 14487319 14487626 -203549532 - AluSx SINE Alu -6 306 1 1956 173 0 3 chr3 14487627 14487940 -203549218 - AluJo SINE Alu 0 312 1 420 106 91 0 chr3 14488135 14488201 -203548957 - HY1 scRNA scRNA -39 73 2 2060 118 3 20 chr3 14488212 14488370 -203548788 - AluSx SINE Alu -21 291 139 2337 94 0 3 chr3 14488370 14488667 -203548491 - AluSc SINE Alu -13 296 1 2060 118 3 20 chr3 14488667 14488804 -203548354 - AluSx SINE Alu -173 139 1 1039 162 241 9 chr3 14489020 14489248 -203547910 + AluSg1 SINE Alu 13 293 -16 1187 126 277 0 chr3 14489261 14489492 -203547666 + AluSx SINE Alu 1 295 -7 2226 97 10 3 chr3 14489492 14489790 -203547368 + AluSx SINE Alu 1 300 -12 196 329 52 58 chr3 14490462 14490617 -203546541 + MIR3 SINE MIR 1 154 -54 441 239 22 45 chr3 14490670 14490804 -203546354 + MIR SINE MIR 8 138 -124 263 250 269 0 chr3 14491298 14491406 -203545752 + MER5A DNA MER1_type 53 189 0 2205 87 45 7 chr3 14491633 14491922 -203545236 + AluSx SINE Alu 1 300 -12 302 0 0 0 chr3 14491922 14491956 -203545202 + HUERS-P1 LTR ERV1 1535 1568 -4695 2066 122 29 52 chr3 14491971 14492072 -203545086 + HUERS-P1 LTR ERV1 1533 1635 -4628 1800 111 111 0 chr3 14492072 14492342 -203544816 + AluSx SINE Alu 1 300 -12 2066 122 29 52 chr3 14492342 14492625 -203544533 + HUERS-P1 LTR ERV1 1635 1908 -4355 673 146 19 19 chr3 14492625 14492783 -203544375 + GA-rich Low_complexity Low_complexity 1 158 0 5577 166 45 12 chr3 14492785 14493820 -203543338 + HUERS-P1 LTR ERV1 2405 3474 -4063 2350 110 0 0 chr3 14493820 14494128 -203543030 - AluSx SINE Alu -4 308 1 296 265 53 69 chr3 14495829 14496018 -203541140 - MER20B DNA MER1_type -597 186 1 603 272 136 0 chr3 14496018 14496209 -203540949 + MLT1K LTR MaLR 133 349 -239 25 0 0 0 chr3 14497116 14497141 -203540017 + GC_rich Low_complexity Low_complexity 1 25 0 211 284 149 14 chr3 14498219 14498293 -203538865 - MIR SINE MIR -168 94 11 234 0 0 0 chr3 14498375 14498401 -203538757 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 197 309 117 11 chr3 14498470 14498564 -203538594 + L2 LINE L2 2932 3035 -237 258 32 0 0 chr3 14498875 14498906 -203538252 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 207 288 243 0 chr3 14499090 14499201 -203537957 - L2 LINE L2 -213 3059 2922 2293 52 29 0 chr3 14499210 14499510 -203537648 - AluY SINE Alu 0 308 1 292 274 18 35 chr3 14499541 14499654 -203537504 - L2 LINE L2 -488 2826 2716 267 280 54 42 chr3 14501340 14501508 -203535650 - L2 LINE L2 -213 3059 2890 281 323 57 16 chr3 14503156 14503280 -203533878 + MIR SINE MIR 125 253 -9 297 274 263 11 chr3 14503388 14503567 -203533591 + MIR SINE MIR 21 244 -18 2432 96 3 0 chr3 14504932 14505244 -203531914 - AluSp SINE Alu 0 313 1 904 122 23 0 chr3 14505437 14505568 -203531590 - AluJo SINE Alu -178 134 1 257 304 135 30 chr3 14505584 14505814 -203531344 - L1ME LINE L1 -308 5813 5560 359 67 0 33 chr3 14506096 14506156 -203531002 + (CAT)n Simple_repeat Simple_repeat 1 58 0 316 291 107 0 chr3 14506271 14506374 -203530784 - MIR SINE MIR -93 169 56 185 250 0 23 chr3 14507028 14507072 -203530086 - MIR SINE MIR -76 132 90 1445 143 0 9 chr3 14507610 14507826 -203529332 + AluSg/x SINE Alu 79 292 -20 564 233 30 8 chr3 14508423 14508556 -203528602 + FLAM_C SINE Alu 3 138 -5 444 293 79 6 chr3 14508671 14508835 -203528323 + MIR SINE MIR 71 246 -16 230 247 13 52 chr3 14510228 14510305 -203526853 - MER5B DNA MER1_type -3 175 102 206 362 0 0 chr3 14510279 14510337 -203526821 + MER5A DNA MER1_type 63 120 -69 * 2378 86 0 7 chr3 14510914 14511215 -203525943 - AluSg SINE Alu -11 299 1 310 292 78 62 chr3 14511609 14511840 -203525318 - MIR SINE MIR -15 247 18 555 172 106 0 chr3 14513482 14513633 -203523525 - Charlie5 DNA MER1_type -92 2520 2354 2047 143 10 0 chr3 14513640 14513947 -203523211 + AluSx SINE Alu 1 310 -2 248 217 47 47 chr3 14513982 14514046 -203523112 - Charlie5 DNA MER1_type -2461 163 97 2448 65 13 3 chr3 14514046 14514353 -203522805 + AluY SINE Alu 1 310 -1 248 217 47 47 chr3 14514353 14514394 -203522764 - Charlie5 DNA MER1_type -2526 98 58 1269 173 32 22 chr3 14514431 14514709 -203522449 - L1PA16 LINE L1 0 6166 5886 3445 85 42 24 chr3 14514730 14514773 -203522385 - L1MA3 LINE L1 -5 6300 6259 2392 87 7 0 chr3 14514773 14515071 -203522087 - AluSg SINE Alu -10 300 1 3445 85 42 24 chr3 14515071 14515581 -203521577 - L1MA3 LINE L1 -46 6259 5737 365 208 47 28 chr3 14515748 14515854 -203521304 + MER103 DNA DNA 50 157 -9 2135 87 7 4 chr3 14515984 14516260 -203520898 + AluSx SINE Alu 1 277 -35 2548 57 0 16 chr3 14516261 14516577 -203520581 + AluY SINE Alu 1 311 0 522 228 103 0 chr3 14516622 14516767 -203520391 + Charlie2 DNA MER1_type 36 195 -2587 214 254 0 0 chr3 14517079 14517134 -203520024 + MIR SINE MIR 90 144 -118 389 273 45 9 chr3 14517207 14517317 -203519841 + L2 LINE L2 3192 3305 -8 319 243 215 35 chr3 14517343 14517487 -203519671 - MIR SINE MIR -61 201 32 2091 109 0 4 chr3 14517984 14518260 -203518898 - AluSq SINE Alu -23 290 16 1802 145 84 10 chr3 14518556 14518867 -203518291 + MER1B DNA MER1_type 6 339 0 2190 105 0 7 chr3 14519536 14519831 -203517327 + AluSg SINE Alu 16 308 -2 2415 88 3 0 chr3 14519892 14520189 -203516969 - AluSg SINE Alu -12 298 1 633 283 62 52 chr3 14520787 14520907 -203516251 - MER113 DNA MER1_type? -5 516 399 2557 93 0 0 chr3 14520907 14521219 -203515939 - AluSx SINE Alu 0 312 1 633 283 62 52 chr3 14521219 14521423 -203515735 - MER113 DNA MER1_type? -122 399 189 2142 130 0 0 chr3 14521423 14521715 -203515443 + AluSq SINE Alu 1 292 -21 439 303 119 18 chr3 14522129 14522347 -203514811 + MIR SINE MIR 20 259 -3 1023 137 137 19 chr3 14522357 14522406 -203514752 + MER46A DNA MER2_type 1 43 -2688 2190 138 0 0 chr3 14522406 14522703 -203514455 + AluSx SINE Alu 1 297 -15 1023 137 137 19 chr3 14522703 14522864 -203514294 + MER46A DNA MER2_type 43 236 0 25 0 0 0 chr3 14523160 14523185 -203513973 + AT_rich Low_complexity Low_complexity 1 25 0 2312 93 0 0 chr3 14523240 14523555 -203513603 - AluSc SINE Alu 0 315 1 1677 159 35 14 chr3 14523557 14523847 -203513311 - AluJb SINE Alu -16 296 1 186 43 0 0 chr3 14524010 14524033 -203513125 + (A)n Simple_repeat Simple_repeat 1 23 0 349 164 33 0 chr3 14524662 14524723 -203512435 + MER20 DNA MER1_type 3 65 -154 448 213 176 15 chr3 14524766 14524902 -203512256 + MER20 DNA MER1_type 57 214 -5 218 307 139 0 chr3 14524942 14525043 -203512115 - L2 LINE L2 0 3272 3158 2508 79 0 0 chr3 14525186 14525489 -203511669 - AluY SINE Alu -8 303 1 2153 109 0 7 chr3 14525745 14526038 -203511120 - AluSx SINE Alu -21 291 1 2194 141 0 0 chr3 14526038 14526336 -203510822 - AluSx SINE Alu -14 298 1 293 275 42 49 chr3 14526347 14526489 -203510669 + L2 LINE L2 3171 3311 -2 220 376 24 0 chr3 14526593 14526718 -203510440 - L2 LINE L2 -470 2844 2717 2162 99 25 3 chr3 14526863 14527147 -203510011 + AluSx SINE Alu 14 303 -9 1318 213 56 39 chr3 14527155 14527456 -203509702 + L1ME1 LINE L1 5767 6061 -105 1035 182 0 0 chr3 14527456 14527626 -203509532 - FAM SINE Alu -5 170 1 1318 213 56 39 chr3 14527626 14527641 -203509517 + L1ME1 LINE L1 6061 6074 -92 2435 76 0 0 chr3 14527641 14527932 -203509226 - AluY SINE Alu -20 291 1 1318 213 56 39 chr3 14527932 14527971 -203509187 + L1ME1 LINE L1 6074 6129 -37 215 261 57 11 chr3 14528250 14528338 -203508820 - L2 LINE L2 -1077 2237 2146 464 194 20 0 chr3 14529868 14529966 -203507192 - MIR SINE MIR -32 230 131 574 293 0 7 chr3 14529995 14530142 -203507016 - MIR SINE MIR -106 156 11 393 312 130 9 chr3 14530303 14530518 -203506640 + MIR SINE MIR 2 242 -20 660 267 21 69 chr3 14531260 14531500 -203505658 + MIR SINE MIR 30 259 -3 247 336 80 8 chr3 14531515 14531640 -203505518 - L2 LINE L2 -1 3312 3179 214 246 46 31 chr3 14532023 14532088 -203505070 - L2 LINE L2 -250 3022 2957 2211 121 3 3 chr3 14533014 14533320 -203503838 + AluSx SINE Alu 1 306 -6 2024 132 0 7 chr3 14533325 14533606 -203503552 + AluSx SINE Alu 16 294 -18 2578 63 0 0 chr3 14533606 14533908 -203503250 + AluY SINE Alu 1 303 -8 217 299 19 58 chr3 14534213 14534367 -203502791 + L2 LINE L2 2944 3091 -181 424 257 118 0 chr3 14535325 14535469 -203501689 - L1ME3A LINE L1 -32 6138 5978 241 299 259 6 chr3 14535480 14535654 -203501504 - MIR SINE MIR -26 236 19 187 274 53 80 chr3 14535610 14535723 -203501435 + MIR SINE MIR 27 136 -72 * 510 284 82 64 chr3 14535786 14535912 -203501246 - MLT1J1 LTR MaLR -112 334 212 2512 68 0 13 chr3 14535912 14536222 -203500936 + AluY SINE Alu 1 306 -5 510 284 82 64 chr3 14536222 14536423 -203500735 - MLT1J1 LTR MaLR -234 212 1 191 286 0 0 chr3 14536427 14536476 -203500682 + L2 LINE L2 3213 3261 -11 258 303 53 75 chr3 14537006 14537257 -203499901 + L1ME4a LINE L1 5687 5931 -190 2352 109 3 0 chr3 14537257 14537569 -203499589 - AluSq SINE Alu 0 313 1 258 303 53 75 chr3 14537569 14537637 -203499521 + L1ME4a LINE L1 5931 5999 -122 24 32 0 0 chr3 14537661 14537692 -203499466 + AT_rich Low_complexity Low_complexity 1 31 0 230 267 50 75 chr3 14538211 14538331 -203498827 + MER5B DNA MER1_type 7 123 -55 2561 65 0 3 chr3 14538350 14538656 -203498502 - AluY SINE Alu -6 305 1 973 102 0 0 chr3 14538707 14538835 -203498323 + AluSp/q SINE Alu 176 303 -10 344 182 23 11 chr3 14538835 14538923 -203498235 - L1MB2 LINE L1 -36 6135 6047 247 280 10 0 chr3 14538948 14539048 -203498110 - L1MC4 LINE L1 -1 8041 7941 1300 102 0 0 chr3 14539345 14539511 -203497647 - AluSg/x SINE Alu -14 296 131 510 320 93 0 chr3 14539666 14539860 -203497298 - MIR SINE MIR 0 262 51 1895 156 19 10 chr3 14540014 14540321 -203496837 + AluJo SINE Alu 1 310 -2 234 347 75 0 chr3 14540353 14540500 -203496658 + MIR3 SINE MIR 40 197 -11 422 250 191 0 chr3 14540647 14540799 -203496359 + MIR SINE MIR 11 191 -71 219 125 0 0 chr3 14540815 14540855 -203496303 + (TG)n Simple_repeat Simple_repeat 2 41 0 700 175 8 0 chr3 14540868 14540988 -203496170 - FLAM_C SINE Alu -12 121 1 1742 168 35 3 chr3 14541010 14541295 -203495863 - AluJo SINE Alu -18 294 1 711 123 9 9 chr3 14541296 14541410 -203495748 - L1MC1 LINE L1 -9 6324 6211 364 309 80 55 chr3 14542334 14542487 -203494671 - MLT1L LTR MaLR -10 605 457 1162 33 26 0 chr3 14542487 14542639 -203494519 - L1PA5 LINE L1 0 6154 5999 364 309 80 55 chr3 14542639 14542915 -203494243 - MLT1L LTR MaLR -158 457 176 878 294 104 30 chr3 14543340 14543745 -203493413 + MLT1K LTR MaLR 144 578 -10 497 201 148 58 chr3 14543973 14544162 -203492996 - MIR SINE MIR -26 236 31 407 235 41 0 chr3 14544176 14544274 -203492884 + MER91C DNA MER1_type 39 140 0 252 369 76 0 chr3 14544544 14544701 -203492457 - MIR SINE MIR -14 248 80 2727 48 0 0 chr3 14545463 14545774 -203491384 + AluY SINE Alu 1 311 0 301 285 180 48 chr3 14545792 14546098 -203491060 - L2 LINE L2 -159 3113 2763 716 181 30 91 chr3 14546098 14546212 -203490946 + MER5A DNA MER1_type 1 99 -90 2336 95 7 0 chr3 14546212 14546507 -203490651 + AluSx SINE Alu 1 297 -15 716 181 30 91 chr3 14546507 14546591 -203490567 + MER5A DNA MER1_type 99 187 -2 301 285 180 48 chr3 14546591 14546632 -203490526 - L2 LINE L2 -509 2763 2729 1810 159 36 13 chr3 14546883 14547184 -203489974 - AluSx SINE Alu -4 308 1 705 83 0 10 chr3 14547184 14547280 -203489878 - AluSq/x SINE Alu -177 135 41 304 192 26 13 chr3 14547353 14547431 -203489727 + L1ME4a LINE L1 5946 6024 -97 238 228 38 25 chr3 14547880 14547959 -203489199 + MLT1K LTR MaLR 497 576 -12 2436 87 7 3 chr3 14548149 14548459 -203488699 + AluSx SINE Alu 1 311 -1 310 313 90 0 chr3 14548736 14548870 -203488288 - MIR SINE MIR -31 231 86 2126 139 13 3 chr3 14548942 14549292 -203487866 + AluJo SINE Alu 1 353 0 264 290 93 0 chr3 14550009 14550116 -203487042 + MIR SINE MIR 27 143 -119 227 250 0 0 chr3 14550996 14551060 -203486098 + (TG)n Simple_repeat Simple_repeat 2 65 0 180 77 0 0 chr3 14552236 14552262 -203484896 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 224 220 44 11 chr3 14552325 14552416 -203484742 + (TGAA)n Simple_repeat Simple_repeat 1 94 0 547 279 118 60 chr3 14552906 14553486 -203483672 - L2 LINE L2 -45 3227 2612 300 289 240 0 chr3 14553664 14553768 -203483390 - MER5A DNA MER1_type 0 189 61 252 247 68 14 chr3 14553781 14553854 -203483304 - MER5A DNA MER1_type -82 107 31 1286 217 173 8 chr3 14553886 14554250 -203482908 - MLT1K LTR MaLR -43 545 122 321 299 31 0 chr3 14554579 14554676 -203482482 + MIR SINE MIR 89 188 -74 2262 85 27 10 chr3 14555024 14555317 -203481841 - AluSx SINE Alu -14 298 1 264 261 15 0 chr3 14555336 14555401 -203481757 - MIR SINE MIR -85 123 58 1736 83 4 18 chr3 14555426 14555655 -203481503 + AluSp SINE Alu 88 313 0 2178 108 3 54 chr3 14555659 14555975 -203481183 + AluSp SINE Alu 2 301 -12 663 229 14 0 chr3 14555994 14556138 -203481020 - MIR SINE MIR -12 250 105 311 267 50 40 chr3 14556158 14556259 -203480899 - L2 LINE L2 -49 3223 3122 2211 120 0 3 chr3 14556274 14556566 -203480592 - AluSq SINE Alu -22 291 1 928 180 0 44 chr3 14556848 14557031 -203480127 - FAM SINE Alu 0 175 1 219 262 16 0 chr3 14557419 14557480 -203479678 + MIR SINE MIR 82 143 -65 245 232 29 94 chr3 14557576 14557605 -203479553 - L1ME4a LINE L1 -1 6120 6091 1942 115 38 54 chr3 14557605 14557919 -203479239 + AluSq SINE Alu 1 309 -4 245 232 29 94 chr3 14557919 14558027 -203479131 - L1ME4a LINE L1 -30 6091 5992 522 290 65 9 chr3 14558049 14558263 -203478895 + MIR SINE MIR 19 244 -18 192 164 0 49 chr3 14558867 14558928 -203478230 + CT-rich Low_complexity Low_complexity 1 58 0 1084 226 91 47 chr3 14558950 14559380 -203477778 - L2 LINE L2 -20 3293 2845 2443 88 0 10 chr3 14560002 14560309 -203476849 - AluSg1 SINE Alu -5 304 1 709 340 76 18 chr3 14561160 14561340 -203475818 - L2 LINE L2 -433 2881 2713 2288 118 0 0 chr3 14561340 14561636 -203475522 + AluSx SINE Alu 1 296 -16 709 340 76 18 chr3 14561636 14562010 -203475148 - L2 LINE L2 -601 2713 2295 790 143 110 0 chr3 14562017 14562171 -203474987 + MIR SINE MIR 90 260 -2 225 292 22 0 chr3 14562172 14562261 -203474897 + (TA)n Simple_repeat Simple_repeat 2 92 0 1683 146 52 7 chr3 14563951 14564239 -203472919 - AluJo SINE Alu -11 301 1 195 283 33 75 chr3 14564246 14564366 -203472792 - MIR SINE MIR -44 218 104 907 200 0 0 chr3 14564939 14565099 -203472059 - AluSg/x SINE Alu 0 312 153 603 146 15 3 chr3 14565777 14565916 -203471242 + AluSg/x SINE Alu 115 296 -14 1415 74 14 42 chr3 14565916 14566038 -203471120 - HUERS-P1 LTR ERV1 -2149 4114 3999 2090 121 0 0 chr3 14566038 14566335 -203470823 - AluSx SINE Alu -15 297 1 1415 74 14 42 chr3 14566335 14566429 -203470729 - HUERS-P1 LTR ERV1 -2264 3999 3904 1018 167 19 77 chr3 14566440 14566752 -203470406 - AluY SINE Alu -3 298 5 363 217 47 28 chr3 14566963 14567069 -203470089 + MER103 DNA DNA 50 157 -9 346 68 0 0 chr3 14567199 14567243 -203469915 + Alu SINE Alu 1 44 -258 192 97 0 0 chr3 14567443 14567474 -203469684 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 532 191 84 71 chr3 14568009 14568234 -203468924 - AluY SINE Alu -80 231 4 749 187 7 7 chr3 14568330 14568480 -203468678 + L1MB3 LINE L1 5948 6097 -86 1654 119 4 45 chr3 14568496 14568765 -203468393 - LTR8 LTR ERV1 -433 258 1 496 236 49 0 chr3 14568765 14568888 -203468270 - L1ME LINE L1 -401 5763 5635 389 114 48 59 chr3 14569089 14569121 -203468037 - L1ME LINE L1 -518 5647 5616 2538 136 50 68 chr3 14569121 14569620 -203467538 - LTR2B LTR ERV1 0 490 1 389 114 48 59 chr3 14569620 14569683 -203467475 - L1ME LINE L1 -549 5616 5552 1754 176 6 6 chr3 14569702 14570014 -203467144 - AluJb SINE Alu 0 312 1 776 216 13 0 chr3 14570014 14570167 -203466991 - L1ME LINE L1 -587 5579 5425 * 1181 212 21 82 chr3 14570154 14570434 -203466724 + L1M4 LINE L1 4848 5101 -1045 1858 150 10 16 chr3 14570434 14570748 -203466410 + AluJo SINE Alu 1 312 0 1181 212 21 82 chr3 14570748 14570844 -203466314 + L1M4 LINE L1 5101 5201 -945 2369 49 0 3 chr3 14570844 14571132 -203466026 + AluY SINE Alu 1 287 -24 3647 110 24 17 chr3 14571150 14571762 -203465396 + Tigger1 DNA MER2_type 1579 2263 -155 1312 245 36 13 chr3 14571896 14572161 -203464997 - L1MCa LINE L1 -2570 3856 3598 1901 115 39 39 chr3 14572161 14572335 -203464823 - AluSx SINE Alu 0 312 139 390 42 0 0 chr3 14572335 14572383 -203464775 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 1900 113 3 11 chr3 14572383 14572667 -203464491 - AluSx SINE Alu -30 282 1 1901 115 39 39 chr3 14572667 14572803 -203464355 - AluSx SINE Alu -171 141 1 1312 245 36 13 chr3 14572803 14572986 -203464172 - L1MCa LINE L1 -2828 3598 3398 1302 196 28 0 chr3 14572988 14573238 -203463920 - AluJo SINE Alu -12 300 44 876 123 15 8 chr3 14573247 14573377 -203463781 - AluJb SINE Alu -171 141 11 915 202 0 0 chr3 14573384 14573602 -203463556 - L1MCa LINE L1 -3006 3420 3203 554 225 0 39 chr3 14573606 14573735 -203463423 + FLAM_C SINE Alu 7 130 -13 180 0 0 0 chr3 14573770 14573790 -203463368 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1945 121 29 0 chr3 14573792 14574072 -203463086 - AluSg SINE Alu -22 288 1 1948 250 55 2 chr3 14574077 14574645 -203462513 - L1MCa LINE L1 -3234 3192 2595 996 157 35 0 chr3 14574647 14574819 -203462339 - AluJo/FRAM SINE Alu -1 311 134 2167 99 3 10 chr3 14574819 14575131 -203462027 - AluY SINE Alu -1 310 1 1726 146 76 12 chr3 14575131 14575588 -203461570 - L1MCa LINE L1 -3947 2479 2126 1010 57 0 0 chr3 14575600 14575723 -203461435 - AluSc SINE Alu -186 123 1 617 138 288 0 chr3 14575723 14575883 -203461275 - L1MCa LINE L1 -4287 2139 1934 1906 144 0 0 chr3 14576140 14576431 -203460727 + AluSx SINE Alu 1 291 -21 2399 56 0 13 chr3 14576604 14576908 -203460250 + AluY SINE Alu 1 300 -11 1690 141 31 10 chr3 14576947 14577237 -203459921 + AluJo SINE Alu 5 300 -12 446 297 198 4 chr3 14577484 14577716 -203459442 + MLT1L LTR MaLR 216 492 -123 2155 110 0 3 chr3 14578098 14578398 -203458760 + AluSq SINE Alu 1 299 -14 292 243 14 14 chr3 14578485 14578555 -203458603 - Tigger2 DNA MER2_type 0 2718 2649 1664 171 0 23 chr3 14578555 14578859 -203458299 - AluJo SINE Alu -13 299 3 918 41 0 0 chr3 14578861 14578982 -203458176 - Tigger2 DNA MER2_type -162 2556 2436 1993 108 37 27 chr3 14578982 14579278 -203457880 + THE1B LTR MaLR 1 299 -65 2079 108 6 25 chr3 14579278 14579594 -203457564 - AluSg SINE Alu 0 310 1 2162 101 20 0 chr3 14579594 14579891 -203457267 - AluSg SINE Alu -6 304 2 2680 148 87 8 chr3 14579894 14580306 -203456852 + HUERS-P1 LTR ERV1 3914 4379 -1567 2111 80 0 0 chr3 14580306 14580581 -203456577 + AluSq SINE Alu 25 299 -14 2680 148 87 8 chr3 14580581 14580696 -203456462 + HUERS-P1 LTR ERV1 4379 4483 -1463 1031 54 0 8 chr3 14580697 14580827 -203456331 + AluY SINE Alu 98 226 -85 2009 104 13 13 chr3 14580833 14581142 -203456016 + AluSc SINE Alu 1 309 0 1807 121 0 45 chr3 14581169 14581491 -203455667 + AluSx SINE Alu 7 315 0 8056 98 16 33 chr3 14581491 14581769 -203455389 + HUERS-P1 LTR ERV1 5065 5346 -917 2235 78 3 3 chr3 14581769 14582063 -203455095 + AluSp SINE Alu 2 295 -18 8056 98 16 33 chr3 14582063 14582366 -203454792 + HUERS-P1 LTR ERV1 5346 5653 -610 1737 125 31 48 chr3 14582366 14582687 -203454471 - AluSx SINE Alu 0 316 1 8056 98 16 33 chr3 14582687 14582714 -203454444 + HUERS-P1 LTR ERV1 5653 5679 -584 2316 75 0 0 chr3 14582714 14583008 -203454150 + AluY SINE Alu 1 294 -17 8056 98 16 33 chr3 14583008 14583645 -203453513 + HUERS-P1 LTR ERV1 5679 6263 0 4669 104 6 56 chr3 14583645 14584373 -203452785 + LTR8 LTR ERV1 1 691 0 327 262 50 21 chr3 14584378 14584519 -203452639 - L1M4 LINE L1 -899 5247 5103 350 235 53 38 chr3 14584557 14584689 -203452469 - L1M4 LINE L1 -1014 5132 4999 202 239 0 0 chr3 14584702 14584748 -203452410 + T-rich Low_complexity Low_complexity 1 46 0 426 207 24 0 chr3 14584811 14584893 -203452265 - FLAM SINE Alu -20 123 40 480 200 139 133 chr3 14584923 14585036 -203452122 - MER5A DNA MER1_type 0 189 73 1744 141 3 17 chr3 14585036 14585327 -203451831 - AluJo SINE Alu -25 287 1 480 200 139 133 chr3 14585327 14585393 -203451765 - MER5A DNA MER1_type -116 73 9 2128 100 6 16 chr3 14585434 14585745 -203451413 + AluSp SINE Alu 2 309 -4 2094 126 0 0 chr3 14585753 14586055 -203451103 + AluSx SINE Alu 1 302 -10 380 242 0 22 chr3 14586269 14586360 -203450798 + MLT1F LTR MaLR 47 135 -407 593 122 28 37 chr3 14586363 14586470 -203450688 + L1MB8 LINE L1 6035 6140 -38 697 229 44 84 chr3 14586516 14586575 -203450583 + L1ME3 LINE L1 5919 5979 -183 1927 133 0 25 chr3 14586575 14586890 -203450268 + AluSx SINE Alu 1 307 -5 697 229 44 84 chr3 14586890 14587079 -203450079 + L1ME3 LINE L1 5979 6155 -7 1447 179 7 24 chr3 14587081 14587371 -203449787 - AluSp SINE Alu -17 296 12 216 0 0 0 chr3 14588755 14588779 -203448379 + (TA)n Simple_repeat Simple_repeat 2 25 0 1736 130 44 0 chr3 14588782 14589075 -203448083 - AluSq SINE Alu -7 306 1 1812 157 0 0 chr3 14589339 14589638 -203447520 - AluJo SINE Alu -13 299 1 2008 103 3 0 chr3 14589653 14589943 -203447215 - AluSx SINE Alu -21 291 1 22 35 0 0 chr3 14590348 14590377 -203446781 + GC_rich Low_complexity Low_complexity 1 29 0 552 238 67 54 chr3 14590393 14590616 -203446542 + L1M4 LINE L1 3553 3778 -2368 519 138 0 12 chr3 14590627 14590707 -203446451 + AluJ/FLAM SINE Alu 9 87 -225 5038 69 14 43 chr3 14590769 14590900 -203446258 + LTR8 LTR ERV1 1 134 -557 2169 29 39 59 chr3 14590900 14591207 -203445951 - AluY SINE Alu -10 301 1 5038 69 14 43 chr3 14591207 14591787 -203445371 + LTR8 LTR ERV1 134 691 0 976 153 10 61 chr3 14591787 14591983 -203445175 + LTR8 LTR ERV1 3 188 -503 1446 204 72 135 chr3 14591985 14592710 -203444448 + LTR8A LTR ERV1 49 727 0 1400 220 58 47 chr3 14592710 14592770 -203444388 + L1M4 LINE L1 3885 3943 -2203 2213 89 0 13 chr3 14592770 14593074 -203444084 + AluSc SINE Alu 1 300 -9 1400 220 58 47 chr3 14593074 14593463 -203443695 + L1M4 LINE L1 3943 4339 -1807 2250 91 7 3 chr3 14593474 14593782 -203443376 + AluY SINE Alu 1 309 -2 1839 128 37 3 chr3 14593819 14594116 -203443042 + AluSx SINE Alu 3 309 -3 2071 121 3 33 chr3 14594116 14594325 -203442833 + L1PB3 LINE L1 5828 6026 -128 2234 64 11 0 chr3 14594325 14594650 -203442508 + AluSp SINE Alu 1 328 0 2071 121 3 33 chr3 14594650 14594769 -203442389 + L1PB3 LINE L1 6026 6147 -7 371 88 29 88 chr3 14594774 14594819 -203442339 - LTR49-int LTR ERV1 -4184 2147 2106 2015 143 74 36 chr3 14594819 14595051 -203442107 + LTR23 LTR ERV1 1 258 -179 2213 87 3 13 chr3 14595051 14595361 -203441797 - AluSx SINE Alu -5 307 1 2015 143 74 36 chr3 14595361 14595549 -203441609 + LTR23 LTR ERV1 258 437 0 371 88 29 88 chr3 14595549 14595571 -203441587 - LTR49-int LTR ERV1 -4225 2106 2084 3404 136 30 76 chr3 14595573 14596205 -203440953 + LTR26 LTR ERV1 1 603 0 287 377 45 13 chr3 14596229 14596383 -203440775 + HUERS-P1 LTR ERV1 25 183 -6080 2331 77 0 7 chr3 14596395 14596705 -203440453 - AluY SINE Alu -3 308 1 1721 258 47 59 chr3 14596822 14597434 -203439724 + HUERS-P1 LTR ERV1 471 1075 -5188 401 298 57 19 chr3 14597411 14597569 -203439589 + HUERS-P1 LTR ERV1 1448 1611 -6646 * 793 340 47 50 chr3 14597762 14598403 -203438755 + PABL_B-int LTR ERV1 916 1554 -5568 411 100 0 0 chr3 14598470 14598530 -203438628 - Alu SINE Alu -4 307 248 513 348 18 26 chr3 14598602 14598875 -203438283 + PABL_B-int LTR ERV1 2832 3102 -4020 1607 337 38 46 chr3 14598942 14600024 -203437134 + PABL_B-int LTR ERV1 3201 4275 -2847 1708 188 0 0 chr3 14600024 14600317 -203436841 - AluJo SINE Alu -17 295 3 1607 337 38 46 chr3 14600317 14600352 -203436806 + PABL_B-int LTR ERV1 4275 4309 -2813 2216 76 0 3 chr3 14600693 14600984 -203436174 - AluSg SINE Alu -20 290 1 21 0 0 0 chr3 14600989 14601010 -203436148 + AT_rich Low_complexity Low_complexity 1 21 0 463 341 25 47 chr3 14601083 14601447 -203435711 + PABL_B-int LTR ERV1 4674 5029 -2093 2268 81 10 0 chr3 14601451 14601748 -203435410 + AluSg SINE Alu 1 300 -10 1335 198 36 4 chr3 14602089 14602367 -203434791 - AluJb SINE Alu -21 291 5 812 165 0 8 chr3 14602383 14602516 -203434642 - AluJb SINE Alu -178 134 3 257 87 29 58 chr3 14602737 14602806 -203434352 + (TTCC)n Simple_repeat Simple_repeat 3 69 0 1304 202 126 37 chr3 14602866 14603247 -203433911 - MLT1C LTR MaLR -52 415 1 2430 140 5 10 chr3 14603389 14603795 -203433363 - L1MB3 LINE L1 -1 6182 5779 247 222 0 0 chr3 14603971 14604016 -203433142 + MIR SINE MIR 187 231 -31 9457 135 89 43 chr3 14604187 14605570 -203431588 + L1MCa LINE L1 1 1492 -4934 215 30 0 30 chr3 14605570 14605603 -203431555 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 9457 135 89 43 chr3 14605603 14606067 -203431091 + L1MCa LINE L1 1492 1933 -4493 1888 96 0 0 chr3 14606069 14606357 -203430801 + AluSx SINE Alu 35 322 0 1772 95 137 0 chr3 14606407 14606670 -203430488 - AluSg SINE Alu 0 300 2 243 0 0 0 chr3 14606672 14606699 -203430459 + (CTTG)n Simple_repeat Simple_repeat 3 29 0 10942 117 98 42 chr3 14606699 14606737 -203430421 - HUERS-P1 LTR ERV1 -2206 4057 4023 2422 74 0 0 chr3 14606737 14607048 -203430110 - AluY SINE Alu 0 311 1 2094 103 0 10 chr3 14607048 14607350 -203429808 - AluSq SINE Alu -14 299 1 10942 117 98 42 chr3 14607350 14607442 -203429716 - HUERS-P1 LTR ERV1 -2240 4023 3938 2364 68 7 0 chr3 14607442 14607750 -203429408 - AluY SINE Alu 0 311 2 10942 117 98 42 chr3 14607750 14608435 -203428723 - HUERS-P1 LTR ERV1 -2325 3938 3293 1390 143 20 143 chr3 14608435 14608650 -203428508 - AluYb8 SINE Alu 0 308 151 2276 66 3 0 chr3 14608650 14608937 -203428221 - AluY SINE Alu -23 288 1 1390 143 20 143 chr3 14608937 14609071 -203428087 - AluYb8 SINE Alu -157 151 2 10942 117 98 42 chr3 14609071 14609273 -203427885 - HUERS-P1 LTR ERV1 -2970 3293 3104 2202 108 0 0 chr3 14609273 14609579 -203427579 + AluSx SINE Alu 3 308 -4 10942 117 98 42 chr3 14609579 14610616 -203426542 - HUERS-P1 LTR ERV1 -3159 3104 874 637 149 19 19 chr3 14610617 14610771 -203426387 + CT-rich Low_complexity Low_complexity 1 154 0 9950 103 65 59 chr3 14610771 14611054 -203426104 - HUERS-P1 LTR ERV1 -4355 1908 1628 1659 111 111 0 chr3 14611054 14611324 -203425834 - AluSx SINE Alu -12 300 1 9950 103 65 59 chr3 14611324 14611474 -203425684 - HUERS-P1 LTR ERV1 -4635 1628 1480 2235 96 0 0 chr3 14611474 14611776 -203425382 - AluSx SINE Alu -10 302 1 9950 103 65 59 chr3 14611776 14612079 -203425079 - HUERS-P1 LTR ERV1 -4783 1480 1180 333 0 0 0 chr3 14612079 14612116 -203425042 + (GA)n Simple_repeat Simple_repeat 2 38 0 9950 103 65 59 chr3 14612116 14613115 -203424043 - HUERS-P1 LTR ERV1 -5083 1180 173 2239 69 0 23 chr3 14613115 14613419 -203423739 + AluY SINE Alu 1 297 -14 9950 103 65 59 chr3 14613419 14613594 -203423564 - HUERS-P1 LTR ERV1 -6090 173 1 4113 101 17 124 chr3 14613594 14613660 -203423498 - LTR8 LTR ERV1 0 691 620 2126 83 4 0 chr3 14613660 14613937 -203423221 + AluSp SINE Alu 3 280 -33 2452 49 0 10 chr3 14613938 14614243 -203422915 + AluY SINE Alu 1 302 -9 4113 101 17 124 chr3 14614243 14614861 -203422297 - LTR8 LTR ERV1 -71 620 95 7050 60 5 1 chr3 14614861 14615931 -203421227 + L1PA6 LINE L1 5079 6151 -3 4113 101 17 124 chr3 14615931 14616017 -203421141 - LTR8 LTR ERV1 -596 95 1 643 246 27 0 chr3 14616023 14616210 -203420948 + L1ME LINE L1 5254 5445 -725 * 906 213 127 8 chr3 14616201 14616469 -203420689 + L1ME1 LINE L1 5863 6162 -4 1550 184 4 0 chr3 14616524 14616830 -203420328 + AluJb SINE Alu 9 315 0 297 241 125 0 chr3 14616885 14616997 -203420161 + L1ME LINE L1 5428 5553 -609 240 93 209 0 chr3 14617036 14617079 -203420079 - LTR54 LTR ERV1 0 510 459 1973 118 0 10 chr3 14617080 14617256 -203419902 - AluSx SINE Alu -3 309 136 2134 106 0 0 chr3 14617256 14617548 -203419610 - AluSq SINE Alu -21 292 1 1973 118 0 10 chr3 14617548 14617676 -203419482 - AluSx SINE Alu -176 136 8 1509 153 43 98 chr3 14617676 14617731 -203419427 - LTR54 LTR ERV1 -134 376 320 2240 77 0 26 chr3 14617731 14618042 -203419116 - AluY SINE Alu -8 303 1 1509 153 43 98 chr3 14618042 14618117 -203419041 - LTR54 LTR ERV1 -190 320 242 1987 126 0 40 chr3 14618117 14618442 -203418716 + AluSx SINE Alu 1 312 0 1509 153 43 98 chr3 14618442 14618689 -203418469 - LTR54 LTR ERV1 -268 242 18 1567 156 39 39 chr3 14618689 14618997 -203418161 - AluJb SINE Alu -4 308 1 1509 153 43 98 chr3 14618997 14619015 -203418143 - LTR54 LTR ERV1 -492 18 1 228 306 56 0 chr3 14619015 14619087 -203418071 + L1ME LINE L1 5614 5689 -481 1795 154 0 7 chr3 14619090 14619395 -203417763 + AluJo SINE Alu 1 303 -9 687 211 54 70 chr3 14619607 14619920 -203417238 + L1MC5 LINE L1 7624 7931 -30 289 239 11 57 chr3 14619948 14620036 -203417122 + MIR SINE MIR 98 181 -81 2113 89 17 0 chr3 14620071 14620363 -203416795 - AluSg SINE Alu -13 297 1 2046 115 3 0 chr3 14620451 14620747 -203416411 - AluSx SINE Alu -15 297 1 333 271 12 12 chr3 14622259 14622344 -203414814 + MER5A DNA MER1_type 49 133 -56 2095 99 3 7 chr3 14622345 14622648 -203414510 - AluSx SINE Alu -10 302 1 1788 173 0 3 chr3 14622649 14622962 -203414196 - AluJo SINE Alu 0 312 1 442 106 91 0 chr3 14623157 14623223 -203413935 - HY1 scRNA scRNA -39 73 2 1909 118 3 20 chr3 14623234 14623392 -203413766 - AluSx SINE Alu -21 291 139 2181 94 0 3 chr3 14623392 14623689 -203413469 - AluSc SINE Alu -13 296 1 1909 118 3 20 chr3 14623689 14623826 -203413332 - AluSx SINE Alu -173 139 1 915 140 263 31 chr3 14624042 14624270 -203412888 + AluSg1 SINE Alu 13 293 -16 1243 117 283 9 chr3 14624283 14624513 -203412645 + AluSx SINE Alu 1 293 -9 1399 174 11 4 chr3 14624513 14624794 -203412364 + AluSx SINE Alu 1 283 -29 2141 65 25 0 chr3 14625369 14625669 -203411489 - AluSp SINE Alu 0 307 1 694 263 28 49 chr3 14626145 14626189 -203410969 - L1M4 LINE L1 -2585 3561 3518 2345 74 0 10 chr3 14626189 14626498 -203410660 - AluY SINE Alu -5 306 1 694 263 28 49 chr3 14626498 14626538 -203410620 - L1M4 LINE L1 -2628 3518 3479 1597 161 39 7 chr3 14626538 14626823 -203410335 + AluJb SINE Alu 1 294 -18 694 263 28 49 chr3 14626823 14627022 -203410136 - L1M4 LINE L1 -2667 3479 3283 236 185 62 0 chr3 14627027 14627092 -203410066 - L1MB5 LINE L1 -6 6168 6100 1789 175 59 71 chr3 14627092 14627531 -203409627 - LTR8A LTR ERV1 0 727 294 291 260 68 0 chr3 14627529 14627602 -203409556 - LTR8 LTR ERV1 -613 78 1 * 814 191 48 33 chr3 14627605 14627815 -203409343 - L1MB5 LINE L1 -74 6100 5888 807 173 0 33 chr3 14627815 14627965 -203409193 - AluJb SINE Alu -82 230 86 860 145 0 0 chr3 14627986 14628110 -203409048 - FLAM_C SINE Alu -8 125 2 23 0 0 0 chr3 14628119 14628142 -203409016 + AT_rich Low_complexity Low_complexity 1 23 0 393 284 36 4 chr3 14628242 14628422 -203408736 - L1MEd LINE L1 -1231 1259 983 22 0 0 0 chr3 14628427 14628449 -203408709 + AT_rich Low_complexity Low_complexity 1 22 0 1911 130 7 20 chr3 14628456 14628592 -203408566 + AluSx SINE Alu 1 137 -175 2228 105 3 0 chr3 14628592 14628896 -203408262 + AluSp SINE Alu 2 306 -7 1911 130 7 20 chr3 14628896 14629059 -203408099 + AluSx SINE Alu 137 296 -16 786 161 0 0 chr3 14629086 14629204 -203407954 - FLAM_C SINE Alu -15 118 1 1949 138 0 3 chr3 14629269 14629560 -203407598 - AluSx SINE Alu -20 292 3 991 193 0 6 chr3 14629577 14629748 -203407410 - FAM SINE Alu -1 174 5 864 144 0 98 chr3 14629803 14629953 -203407205 + Tigger2a DNA MER2_type 1 133 -2575 2205 88 0 0 chr3 14629953 14630247 -203406911 + AluY SINE Alu 1 294 -17 864 144 0 98 chr3 14630247 14630269 -203406889 + Tigger2a DNA MER2_type 133 156 -278 363 122 0 0 chr3 14630269 14630318 -203406840 - THE1A LTR MaLR 0 355 307 2016 117 0 0 chr3 14630321 14630612 -203406546 - AluSg1 SINE Alu -18 291 1 664 158 44 0 chr3 14630632 14630746 -203406412 - FLAM_C SINE Alu -19 124 6 1054 209 72 19 chr3 14630751 14631058 -203406100 - L1M4 LINE L1 -1440 4706 4384 1609 161 3 30 chr3 14631064 14631118 -203406040 - AluJb SINE Alu -21 291 237 2190 158 12 6 chr3 14631118 14631459 -203405699 + MER61A LTR ERV1 1 343 0 1609 161 3 30 chr3 14631459 14631702 -203405456 - AluJb SINE Alu -75 237 2 2089 68 64 20 chr3 14631755 14632051 -203405107 - AluY SINE Alu -2 309 1 2028 113 6 49 chr3 14632066 14632392 -203404766 - AluSx SINE Alu 0 312 1 740 147 0 0 chr3 14632397 14632506 -203404652 - MER50 LTR ERV1 -556 178 70 674 173 0 0 chr3 14632507 14632617 -203404541 + FLAM_C SINE Alu 19 128 -15 2304 80 0 3 chr3 14632622 14632933 -203404225 + AluY SINE Alu 1 310 -1 3961 168 11 18 chr3 14632933 14633596 -203403562 + L1P5 LINE L1 4484 5150 -1004 1999 121 0 14 chr3 14633596 14633893 -203403265 + AluSx SINE Alu 1 293 -19 3961 168 11 18 chr3 14633893 14634353 -203402805 + L1P5 LINE L1 5150 5595 -559 2124 108 3 7 chr3 14634353 14634660 -203402498 - AluSx SINE Alu -6 306 1 3961 168 11 18 chr3 14634660 14634673 -203402485 + L1P5 LINE L1 5595 5607 -547 1824 173 0 0 chr3 14635491 14635803 -203401355 + AluJo SINE Alu 1 312 0 412 334 66 36 chr3 14636227 14636532 -203400626 + HUERS-P1 LTR ERV1 5946 6259 -4 * 3818 164 13 50 chr3 14636519 14636534 -203400624 - LTR49-int LTR ERV1 -4230 2101 2087 3853 128 13 37 chr3 14636534 14637152 -203400006 + LTR26 LTR ERV1 1 603 0 3818 164 13 50 chr3 14637152 14637608 -203399550 - LTR49-int LTR ERV1 -4244 2087 1666 2064 82 0 17 chr3 14637608 14637899 -203399259 - AluSg1 SINE Alu -19 290 5 3818 164 13 50 chr3 14637899 14638184 -203398974 - LTR49-int LTR ERV1 -4665 1666 1372 2114 98 11 0 chr3 14638219 14638505 -203398653 - AluY SINE Alu -13 298 10 549 115 67 5 chr3 14638600 14638704 -203398454 - LTR49-int LTR ERV1 -2946 1934 1290 336 257 0 14 chr3 14638758 14638828 -203398330 - tRNA-Glu-GAG tRNA tRNA 0 75 7 1914 154 77 100 chr3 14638855 14639323 -203397835 - LTR49-int LTR ERV1 -5141 1190 734 2030 133 0 7 chr3 14639325 14639634 -203397524 + AluSx SINE Alu 1 307 -5 606 188 10 0 chr3 14639635 14639731 -203397427 - LTR49-int LTR ERV1 -6234 97 1 672 103 62 0 chr3 14639737 14639855 -203397303 + LTR49 LTR ERV1 486 592 -3 3605 195 53 51 chr3 14639858 14640073 -203397085 + L1ME1 LINE L1 5236 5449 -717 261 57 0 0 chr3 14640073 14640108 -203397050 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 9924 41 73 5 chr3 14640108 14641383 -203395775 - SVA Other Other -19 1367 6 3605 195 53 51 chr3 14641383 14642092 -203395066 + L1ME1 LINE L1 5448 6161 -5 641 198 41 8 chr3 14642284 14642405 -203394753 + FLAM_C SINE Alu 2 126 -17 1097 127 12 0 chr3 14642560 14642726 -203394432 + AluSg/x SINE Alu 131 298 -14 1734 217 5 8 chr3 14642728 14643119 -203394039 + L1MB4 LINE L1 4817 5206 -940 2026 103 31 0 chr3 14643143 14643433 -203393725 - AluSx SINE Alu -13 299 1 4635 137 37 18 chr3 14643435 14644254 -203392904 + L1MB4 LINE L1 5337 6170 -10 769 237 0 0 chr3 14644432 14644584 -203392574 - FRAM SINE Alu -14 152 1 2440 42 0 33 chr3 14644659 14644965 -203392193 + AluY SINE Alu 1 296 -15 265 282 53 0 chr3 14645221 14645352 -203391806 + L1MDa LINE L1 2444 2581 -3959 552 223 12 54 chr3 14645880 14646046 -203391112 - L1ME2 LINE L1 -10 6154 5996 * 580 274 17 45 chr3 14646034 14646200 -203390958 + L1MDa LINE L1 2918 3074 -3466 1562 171 0 63 chr3 14646200 14646533 -203390625 - AluJo SINE Alu 0 312 1 580 274 17 45 chr3 14646533 14646654 -203390504 + L1MDa LINE L1 3074 3197 -3343 1041 169 0 11 chr3 14646939 14647122 -203390036 + AluJb SINE Alu 122 302 -10 23 0 0 0 chr3 14647137 14647160 -203389998 + AT_rich Low_complexity Low_complexity 1 23 0 203 266 31 62 chr3 14647217 14647281 -203389877 - MIR SINE MIR -62 146 85 392 256 115 39 chr3 14647322 14647478 -203389680 + L2 LINE L2 3136 3303 -10 329 134 119 15 chr3 14647502 14647569 -203389589 - MLT1B LTR MaLR 0 390 317 1080 125 11 11 chr3 14647576 14647752 -203389406 - AluY SINE Alu 0 311 136 541 80 91 11 chr3 14647752 14647840 -203389318 - MLT1B LTR MaLR -58 332 238 874 141 0 15 chr3 14648103 14648238 -203388920 + FLAM_A SINE Alu 1 133 0 423 83 0 0 chr3 14648386 14648446 -203388712 + (TC)n Simple_repeat Simple_repeat 1 60 0 757 165 0 0 chr3 14648639 14648760 -203388398 + FLAM_C SINE Alu 1 121 -22 2286 64 0 10 chr3 14648770 14649067 -203388091 + AluY SINE Alu 1 294 -17 977 196 10 10 chr3 14649697 14649891 -203387267 + L1PB4 LINE L1 5949 6142 -14 2027 128 0 13 chr3 14649892 14650197 -203386961 - AluSx SINE Alu -11 301 1 5341 38 8 159 chr3 14650455 14651478 -203385680 - SVA Other Other -518 868 1 466 270 209 23 chr3 14651489 14651704 -203385454 - MIR SINE MIR -2 260 6 2013 116 13 16 chr3 14651747 14652058 -203385100 + AluSx SINE Alu 1 310 -2 945 221 61 35 chr3 14652079 14652226 -203384932 + MIR SINE MIR 5 162 -100 2031 160 39 16 chr3 14652226 14652607 -203384551 - MLT1B LTR MaLR 0 390 1 945 221 61 35 chr3 14652607 14652690 -203384468 + MIR SINE MIR 162 241 -21 437 318 79 9 chr3 14653026 14653240 -203383918 - MIR SINE MIR -1 261 33 1300 35 12 6 chr3 14653270 14653440 -203383718 + (TTTC)n Simple_repeat Simple_repeat 4 174 0 2025 121 19 0 chr3 14653472 14653779 -203383379 - AluSq SINE Alu 0 313 1 617 216 54 11 chr3 14653872 14654057 -203383101 - MLT1K LTR MaLR -17 571 379 351 150 0 0 chr3 14654058 14654118 -203383040 + (TC)n Simple_repeat Simple_repeat 1 60 0 2153 116 3 0 chr3 14654118 14654428 -203382730 - AluSx SINE Alu -1 311 1 740 262 87 36 chr3 14654428 14654703 -203382455 - MLT1K LTR MaLR -162 426 138 225 0 0 0 chr3 14654714 14654739 -203382419 + (TG)n Simple_repeat Simple_repeat 1 25 0 258 32 0 0 chr3 14654741 14654772 -203382386 + (GA)n Simple_repeat Simple_repeat 2 32 0 450 204 34 109 chr3 14655158 14655305 -203381853 + L2 LINE L2 3137 3272 0 227 294 42 42 chr3 14655354 14655473 -203381685 + MIR3 SINE MIR 90 208 0 883 187 0 0 chr3 14655873 14656028 -203381130 - FRAM SINE Alu -11 155 1 270 234 56 56 chr3 14656147 14656254 -203380904 - MIR SINE MIR -63 145 39 292 301 0 0 chr3 14656375 14656468 -203380690 - L2 LINE L2 -10 3303 3211 1948 99 7 23 chr3 14656937 14657239 -203379919 + AluSg SINE Alu 1 297 -13 346 301 8 15 chr3 14657308 14657441 -203379717 - AluSg/x SINE Alu 0 302 171 27 62 0 0 chr3 14657470 14657518 -203379640 + AT_rich Low_complexity Low_complexity 1 48 0 1776 125 0 8 chr3 14659496 14659760 -203377398 - AluSx SINE Alu -50 262 1 195 189 0 0 chr3 14659768 14659805 -203377353 + L2 LINE L2 1750 1786 -1528 27 0 0 0 chr3 14660514 14660541 -203376617 + GC_rich Low_complexity Low_complexity 1 27 0 41 21 0 0 chr3 14660787 14660835 -203376323 + GC_rich Low_complexity Low_complexity 1 48 0 22 35 0 0 chr3 14661250 14661279 -203375879 + GC_rich Low_complexity Low_complexity 1 29 0 817 76 0 0 chr3 14661613 14661718 -203375440 - AluJb SINE Alu -207 105 1 22 35 0 0 chr3 14661741 14661770 -203375388 + AT_rich Low_complexity Low_complexity 1 29 0 2197 88 3 16 chr3 14661868 14662176 -203374982 + AluSg SINE Alu 1 304 -6 289 181 66 0 chr3 14865373 14865455 -203171703 - MIR SINE MIR -77 131 36 345 195 18 0 chr3 14865789 14865872 -203171286 - MIR SINE MIR -62 146 100 245 338 55 7 chr3 14866958 14867103 -203170055 + L1ME4a LINE L1 5961 6112 -9 445 248 6 64 chr3 14867890 14868047 -203169111 - MIR3 SINE MIR -45 163 16 440 218 12 11 chr3 14868296 14868431 -203168727 - MIR SINE MIR -59 149 37 252 266 0 0 chr3 14868490 14868569 -203168589 - MIR SINE MIR -62 146 68 2088 103 7 0 chr3 14868956 14869261 -203167897 + AluSx SINE Alu 1 307 0 841 271 74 13 chr3 14870477 14870776 -203166382 + MER113 DNA MER1_type? 8 324 -197 183 189 0 0 chr3 14870937 14870974 -203166184 + MIR3 SINE MIR 150 186 -22 345 280 61 30 chr3 14871809 14871941 -203165217 - MIR SINE MIR -117 145 10 478 31 0 0 chr3 14871975 14872040 -203165118 + AluSp/q SINE Alu 243 307 -6 390 258 89 8 chr3 14873760 14873884 -203163274 - MIR SINE MIR -81 181 48 297 253 24 48 chr3 14880195 14880321 -203156837 - MIR3 SINE MIR -91 117 11 201 227 30 45 chr3 14880319 14880385 -203156773 - MIR3 SINE MIR -37 171 107 * 267 146 0 0 chr3 14882412 14882467 -203154691 + (TA)n Simple_repeat Simple_repeat 2 56 0 186 43 0 0 chr3 14884285 14884308 -203152850 + (CA)n Simple_repeat Simple_repeat 1 23 0 269 342 68 27 chr3 14885059 14885322 -203151836 - L1M4 LINE L1 -1232 4914 4641 198 135 19 39 chr3 14886617 14886669 -203150489 - MIR SINE MIR -77 131 81 443 333 68 5 chr3 14887178 14887370 -203149788 - MIR SINE MIR -54 208 5 289 261 81 36 chr3 14887518 14887629 -203149529 - MIR3 SINE MIR -47 161 46 2185 114 0 0 chr3 14887659 14887967 -203149191 + AluSx SINE Alu 1 308 -4 527 0 16 0 chr3 14888811 14888874 -203148284 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 2064 82 24 10 chr3 14888874 14889165 -203147993 - AluSx SINE Alu -17 295 1 417 213 82 41 chr3 14889859 14889981 -203147177 - MIR SINE MIR -86 176 50 671 137 30 18 chr3 14890539 14890707 -203146451 + CT-rich Low_complexity Low_complexity 5 174 0 302 215 13 0 chr3 14890723 14890802 -203146356 + CT-rich Low_complexity Low_complexity 1 80 0 308 241 19 37 chr3 14891018 14891126 -203146032 + MIR SINE MIR 32 137 -71 358 276 48 35 chr3 14891537 14891682 -203145476 - L2 LINE L2 0 3313 3167 434 325 175 38 chr3 14892031 14892373 -203144785 + L2 LINE L2 2884 3272 0 207 261 43 65 chr3 14893384 14893476 -203143682 + MIR SINE MIR 103 192 -70 451 276 31 31 chr3 14893483 14893536 -203143622 - MIR SINE MIR 0 262 210 2255 78 3 0 chr3 14893536 14893829 -203143329 - AluSp SINE Alu -4 309 16 451 276 31 31 chr3 14893829 14893938 -203143220 - MIR SINE MIR -51 211 100 214 316 25 0 chr3 14893938 14894017 -203143141 - MIR SINE MIR -70 138 58 180 0 0 0 chr3 14895072 14895092 -203142066 + (CCCA)n Simple_repeat Simple_repeat 1 20 0 319 289 194 55 chr3 14895427 14895628 -203141530 + MIR SINE MIR 17 245 -17 1727 184 97 35 chr3 14895949 14896284 -203140874 + Charlie4a DNA MER1_type 21 393 -1568 920 178 6 6 chr3 14896284 14896441 -203140717 + FRAM SINE Alu 1 157 -9 1727 184 97 35 chr3 14896441 14896561 -203140597 + Charlie4a DNA MER1_type 393 504 -4 209 280 199 15 chr3 14897086 14897223 -203139935 - MIR SINE MIR -89 173 3 240 306 71 0 chr3 14897583 14897681 -203139477 + MIR SINE MIR 41 145 -63 3207 183 41 17 chr3 14898929 14899567 -203137591 - MER6 DNA MER2_type -183 682 30 2688 154 50 21 chr3 14899575 14900043 -203137115 - L1MB7 LINE L1 -259 5925 5439 2182 115 0 10 chr3 14900043 14900355 -203136803 - AluSx SINE Alu -3 309 1 2688 154 50 21 chr3 14900355 14900411 -203136747 - L1MB7 LINE L1 -745 5439 5386 668 348 51 52 chr3 14900976 14901327 -203135831 + HAL1b LINE L1 302 652 -932 2212 96 7 0 chr3 14901327 14901628 -203135530 + AluSx SINE Alu 1 303 -9 849 145 15 0 chr3 14901632 14901763 -203135395 + FLAM_C SINE Alu 1 133 0 668 348 51 52 chr3 14901763 14901973 -203135185 + HAL1b LINE L1 655 730 -854 1207 221 95 57 chr3 14901974 14902495 -203134663 + L1ME1 LINE L1 5635 6333 -1 280 304 72 0 chr3 14902492 14902630 -203134528 + HAL1b LINE L1 753 900 -684 * 2063 106 0 20 chr3 14902691 14902803 -203134355 + AluSx SINE Alu 1 114 -198 2141 127 59 31 chr3 14902803 14903157 -203134001 + THE1B LTR MaLR 1 364 0 2063 106 0 20 chr3 14903157 14903345 -203133813 + AluSx SINE Alu 114 295 -17 848 146 17 73 chr3 14903346 14903524 -203133634 + FRAM SINE Alu 8 175 -1 973 240 106 37 chr3 14903525 14903604 -203133554 + L1MC5 LINE L1 6996 7068 -893 2217 130 51 23 chr3 14903604 14903958 -203133200 - THE1B LTR MaLR 0 364 1 973 240 106 37 chr3 14903958 14904282 -203132876 + L1MC5 LINE L1 7068 7427 -534 257 202 18 83 chr3 14904440 14904549 -203132609 + L1ME3A LINE L1 5960 6061 -109 336 269 90 18 chr3 14906644 14906811 -203130347 - MIR SINE MIR -35 227 49 526 233 60 0 chr3 14907010 14907143 -203130015 + L1MB2 LINE L1 6028 6168 -3 1813 170 45 28 chr3 14907448 14907847 -203129311 - L1MB2 LINE L1 -99 6072 5667 225 292 0 13 chr3 14907895 14907968 -203129190 - MIR SINE MIR -112 96 47 1864 82 56 43 chr3 14908294 14908599 -203128559 - AluSx SINE Alu -3 309 1 669 176 146 24 chr3 14908729 14908894 -203128264 - MER5A DNA MER1_type 0 189 5 187 301 189 7 chr3 14910155 14910298 -203126860 - MIR SINE MIR -4 258 90 1693 146 21 7 chr3 14911543 14911823 -203125335 + AluSx SINE Alu 11 294 -18 630 151 126 17 chr3 14911830 14911949 -203125209 + FLAM_C SINE Alu 1 132 -1 7863 22 5 0 chr3 14911951 14913168 -203123990 + L1PA3 LINE L1 4963 6178 0 704 262 166 39 chr3 14913186 14913407 -203123751 + L1MEc LINE L1 93 284 -6112 2416 95 0 0 chr3 14913407 14913716 -203123442 + AluSx SINE Alu 1 307 -5 704 262 166 39 chr3 14913716 14913910 -203123248 + L1MEc LINE L1 284 561 -5835 2273 96 31 0 chr3 14913951 14914243 -203122915 + AluSg SINE Alu 1 301 -9 496 213 92 67 chr3 14914251 14914490 -203122668 + L1MEc LINE L1 1512 1756 -4640 909 150 0 21 chr3 14914493 14914633 -203122525 + AluJo SINE Alu 1 137 -175 2397 116 0 0 chr3 14914653 14914963 -203122195 + AluSx SINE Alu 1 310 -2 704 192 0 0 chr3 14915032 14915157 -203122001 + AluJb SINE Alu 179 303 -9 968 290 84 7 chr3 14915157 14915574 -203121584 + L1MEc LINE L1 1759 2207 -4189 399 241 98 0 chr3 14915552 14915685 -203121473 + L1MD3 LINE L1 7833 7978 -86 * 300 277 62 54 chr3 14915788 14915918 -203121240 + MER5A DNA MER1_type 37 167 -22 522 153 59 0 chr3 14916411 14916496 -203120662 + MER33 DNA MER1_type 27 116 -208 1824 144 7 4 chr3 14916497 14916768 -203120390 + AluJb SINE Alu 18 289 -23 684 157 170 7 chr3 14916772 14916925 -203120233 + Tigger1 DNA MER2_type 2241 2418 0 472 289 67 26 chr3 14918261 14918455 -203118703 + MIR3 SINE MIR 5 206 -2 189 250 197 76 chr3 14919424 14919556 -203117602 - MIR3 SINE MIR -26 182 35 261 203 40 54 chr3 14920515 14920589 -203116569 + MIR SINE MIR 59 131 -77 368 248 96 41 chr3 14921565 14921731 -203115427 - MIR SINE MIR -61 147 14 240 200 150 0 chr3 14922332 14922412 -203114746 - MIR3 SINE MIR -7 201 110 243 0 0 0 chr3 14922616 14922643 -203114515 + (A)n Simple_repeat Simple_repeat 1 27 0 321 247 26 0 chr3 14922732 14922809 -203114349 + MIR SINE MIR 105 183 -79 185 277 210 34 chr3 14924011 14924130 -203113028 + MIR3 SINE MIR 7 146 -62 * 196 200 0 0 chr3 14924098 14924133 -203113025 + MIR SINE MIR 114 148 -114 231 279 153 9 chr3 14924448 14924559 -203112599 - MIR SINE MIR -62 146 20 27 62 0 0 chr3 14924848 14924896 -203112262 + AT_rich Low_complexity Low_complexity 1 48 0 212 197 0 33 chr3 14925050 14925111 -203112047 + GA-rich Low_complexity Low_complexity 2 60 0 284 239 261 0 chr3 14925967 14926059 -203111099 + MER5A DNA MER1_type 39 154 -35 187 208 0 62 chr3 14926504 14926552 -203110606 - L2 LINE L2 -6 3307 3263 316 297 157 22 chr3 14926585 14926768 -203110390 + MIR SINE MIR 45 245 -17 360 266 168 53 chr3 14926804 14927013 -203110145 - MIR SINE MIR -30 232 1 1672 160 0 25 chr3 14927510 14927792 -203109366 + AluSx SINE Alu 38 312 0 339 220 189 38 chr3 14927853 14928144 -203109014 + Tigger8 DNA MER2_type 187 521 -145 189 121 0 0 chr3 14928411 14928444 -203108714 + (A)n Simple_repeat Simple_repeat 1 33 0 2117 125 0 0 chr3 14928564 14928845 -203108313 - AluSx SINE Alu -31 281 1 2557 74 0 0 chr3 14928917 14929226 -203107932 + AluY SINE Alu 1 309 -2 2348 104 0 0 chr3 14933658 14933956 -203103202 + AluSg SINE Alu 1 298 -12 354 279 215 23 chr3 14934304 14934523 -203102635 - MIR SINE MIR 0 262 2 223 226 161 0 chr3 14934677 14934739 -203102419 + L2 LINE L2 3242 3313 0 2001 124 11 3 chr3 14934765 14935077 -203102081 - AluSx SINE Alu 0 314 1 2091 108 42 0 chr3 14935266 14935554 -203101604 + AluSx SINE Alu 3 302 -10 262 240 83 0 chr3 14936015 14936111 -203101047 + L1ME LINE L1 5761 5864 -257 22 35 0 0 chr3 14936548 14936577 -203100581 + AT_rich Low_complexity Low_complexity 1 29 0 839 124 7 51 chr3 14936927 14937064 -203100094 - FLAM_C SINE Alu -2 131 1 1933 129 28 14 chr3 14937497 14937784 -203099374 - AluJb SINE Alu -21 291 1 1058 85 0 0 chr3 14937787 14937916 -203099242 - AluSq/x SINE Alu -171 142 14 1330 173 9 101 chr3 14937933 14938251 -203098907 + AluSx SINE Alu 1 289 -23 1102 156 24 0 chr3 14938262 14938429 -203098729 + AluJb SINE Alu 132 302 -10 1997 125 0 59 chr3 14938506 14938827 -203098331 + AluSx SINE Alu 1 302 -10 2091 113 34 7 chr3 14938932 14939225 -203097933 + AluSx SINE Alu 1 301 -11 1884 159 28 0 chr3 14940826 14941109 -203096049 - AluJo SINE Alu -21 291 1 1166 235 66 54 chr3 14941122 14941620 -203095538 + MLT1H1 LTR MaLR 10 513 -42 559 213 16 16 chr3 14941670 14941792 -203095366 + L2 LINE L2 3188 3309 -4 456 259 40 46 chr3 14941802 14941976 -203095182 - MER5A DNA MER1_type -1 188 16 318 206 11 43 chr3 14942417 14942509 -203094649 + L1MC5 LINE L1 7837 7925 -36 236 234 144 54 chr3 14942936 14943103 -203094055 + L1MC5 LINE L1 7451 7632 -329 1975 138 37 3 chr3 14943311 14943609 -203093549 + AluSx SINE Alu 1 308 -4 200 241 86 0 chr3 14943653 14943711 -203093447 - MIR SINE MIR -11 251 189 279 203 51 0 chr3 14943747 14943806 -203093352 + HAL1 LINE L1 8 69 -2438 512 241 80 0 chr3 14943811 14943923 -203093235 + MER58A DNA MER1_type 41 161 0 463 246 87 43 chr3 14943985 14944123 -203093035 - MIR SINE MIR -118 144 1 662 263 94 69 chr3 14944333 14944767 -203092391 + HAL1 LINE L1 34 478 -2029 306 170 0 0 chr3 14944785 14944832 -203092326 + AluJ/FRAM SINE Alu 221 267 -35 2243 79 3 76 chr3 14944835 14945163 -203091995 - AluY SINE Alu -7 304 1 21 0 0 0 chr3 14945163 14945184 -203091974 + AT_rich Low_complexity Low_complexity 1 21 0 2312 127 0 0 chr3 14945189 14945496 -203091662 + AluSx SINE Alu 1 307 -5 404 298 156 25 chr3 14945509 14945591 -203091567 + HAL1 LINE L1 1046 1116 -1391 2175 123 10 0 chr3 14945591 14945892 -203091266 + AluSx SINE Alu 1 304 -8 404 298 156 25 chr3 14945892 14946047 -203091111 + HAL1 LINE L1 1116 1314 -1193 489 255 105 79 chr3 14946053 14946434 -203090724 + HAL1 LINE L1 8 398 -2109 3408 243 125 45 chr3 14946437 14947368 -203089790 + HAL1 LINE L1 444 1299 -1208 2346 114 0 0 chr3 14947368 14947676 -203089482 + AluSg SINE Alu 1 308 -2 3408 243 125 45 chr3 14947676 14947732 -203089426 + HAL1 LINE L1 1299 1349 -1158 2229 114 3 7 chr3 14947732 14948030 -203089128 + AluSx SINE Alu 1 297 -15 3408 243 125 45 chr3 14948030 14948863 -203088295 + HAL1 LINE L1 1349 2411 -96 2362 104 3 0 chr3 14948890 14949197 -203087961 + AluSg SINE Alu 1 308 -2 524 292 65 34 chr3 14949281 14949663 -203087495 + MLT1J LTR MaLR 73 504 -7 283 228 22 22 chr3 14950753 14950845 -203086313 - MIR3 SINE MIR -27 181 90 776 168 8 0 chr3 14951263 14951388 -203085770 + AluJo/FLAM SINE Alu 3 128 -184 1898 164 0 7 chr3 14951389 14951687 -203085471 + AluJb SINE Alu 5 300 -12 2085 126 10 3 chr3 14951787 14952096 -203085062 + AluSq SINE Alu 1 311 -2 1233 123 0 0 chr3 14952096 14952278 -203084880 + AluSg/x SINE Alu 120 301 0 2420 51 54 0 chr3 14952411 14952706 -203084452 + AluY SINE Alu 1 311 0 249 146 0 0 chr3 14952917 14952951 -203084207 + (T)n Simple_repeat Simple_repeat 1 37 -18 1909 100 12 0 chr3 14952951 14953201 -203083957 - AluSx SINE Alu -59 253 1 249 146 0 0 chr3 14953201 14953221 -203083937 + (T)n Simple_repeat Simple_repeat 36 55 0 225 0 0 0 chr3 14953236 14953261 -203083897 + (TA)n Simple_repeat Simple_repeat 2 26 0 1819 125 68 29 chr3 14953262 14953542 -203083616 - AluSx SINE Alu -21 291 1 347 291 64 7 chr3 14953833 14953974 -203083184 - Charlie8 DNA MER1_type -2141 276 128 461 248 26 128 chr3 14953983 14954079 -203083079 - L2 LINE L2 -1 3312 3208 1760 169 0 39 chr3 14954079 14954387 -203082771 + AluJb SINE Alu 1 296 -16 461 248 26 128 chr3 14954387 14954556 -203082602 - L2 LINE L2 -105 3208 3074 2019 140 7 3 chr3 14954603 14954895 -203082263 - AluSx SINE Alu -19 293 1 263 219 0 2 chr3 14955132 14955181 -203081977 - MIR SINE MIR -118 90 43 1727 134 15 22 chr3 14955240 14955509 -203081649 + AluJb SINE Alu 1 267 -45 219 36 0 0 chr3 14955519 14955547 -203081611 + (AGGGGG)n Simple_repeat Simple_repeat 4 31 0 261 286 114 28 chr3 14955816 14956071 -203081087 + L2 LINE L2 2581 2857 -457 247 243 214 64 chr3 14956127 14956267 -203080891 + L2 LINE L2 2893 3053 -219 379 327 0 10 chr3 14956632 14956736 -203080422 + MIR SINE MIR 20 122 -140 1885 124 10 42 chr3 14957253 14957397 -203079761 + AluJo SINE Alu 1 148 -164 2496 70 0 3 chr3 14957397 14957698 -203079460 + AluY SINE Alu 1 300 -11 1885 124 10 42 chr3 14957698 14957860 -203079298 + AluJo SINE Alu 148 297 -15 1355 155 88 60 chr3 14958259 14958385 -203078773 + AluJo SINE Alu 6 127 -185 2496 80 0 0 chr3 14958385 14958687 -203078471 - AluY SINE Alu -9 302 1 1355 155 88 60 chr3 14958687 14958844 -203078314 + AluJo SINE Alu 127 297 -15 2025 153 0 0 chr3 14958868 14959162 -203077996 + AluSx SINE Alu 1 294 -18 405 250 56 0 chr3 14960133 14960241 -203076917 + L2 LINE L2 3191 3304 -9 204 40 0 0 chr3 14960360 14960385 -203076773 + (A)n Simple_repeat Simple_repeat 1 25 0 718 225 23 6 chr3 14960569 14960742 -203076416 + MER5B DNA MER1_type 1 176 -2 22 0 0 0 chr3 14961781 14961803 -203075355 + GC_rich Low_complexity Low_complexity 1 22 0 264 204 19 0 chr3 14962424 14962484 -203074674 - MIR SINE MIR -58 150 93 1855 105 80 4 chr3 14962579 14962855 -203074303 + AluJb SINE Alu 1 297 -15 305 219 211 18 chr3 14962857 14962971 -203074187 + L1MC4a LINE L1 5198 5333 -813 1938 139 3 7 chr3 14962971 14963274 -203073884 + AluJb SINE Alu 1 302 -10 2392 59 24 0 chr3 14963366 14963653 -203073505 + AluY SINE Alu 1 294 -17 385 263 61 36 chr3 14963663 14963740 -203073418 + L1MC4a LINE L1 5414 5488 -633 2417 69 0 36 chr3 14963740 14964046 -203073112 + AluY SINE Alu 1 295 -16 385 263 61 36 chr3 14964046 14964315 -203072843 + L1MC4a LINE L1 5488 5572 -549 329 93 56 0 chr3 14964418 14964472 -203072686 - L1MB7 LINE L1 -9 6175 6119 2160 125 0 13 chr3 14964479 14964783 -203072375 + AluSg SINE Alu 4 303 -7 2807 130 110 9 chr3 14964837 14964959 -203072199 - L1MB7 LINE L1 -207 5971 5863 4698 49 26 0 chr3 14964959 14965535 -203071623 - LTR10C LTR ERV1 0 591 1 2807 130 110 9 chr3 14965535 14965941 -203071217 - L1MB7 LINE L1 -315 5863 5390 382 232 0 65 chr3 14966586 14966724 -203070434 - MIR SINE MIR -84 178 50 24 0 0 0 chr3 14966814 14966838 -203070320 + AT_rich Low_complexity Low_complexity 1 24 0 2211 119 0 0 chr3 14967217 14967511 -203069647 + AluSg SINE Alu 1 294 -16 489 159 262 0 chr3 14967744 14967851 -203069307 + AluJo SINE Alu 2 136 -176 1362 31 0 0 chr3 15018161 15018324 -203018834 + L1PA2 LINE L1 5993 6155 0 2177 52 41 17 chr3 15018336 15018626 -203018532 + AluY SINE Alu 1 297 -14 2011 135 3 3 chr3 15019021 15019333 -203017825 + AluSx SINE Alu 1 312 0 1286 137 19 5 chr3 15023692 15023897 -203013261 + AluJb SINE Alu 94 301 -11 2228 74 0 17 chr3 15024227 15024526 -203012632 - AluSp SINE Alu -19 294 1 2039 104 0 38 chr3 15024702 15025020 -203012138 + AluSp SINE Alu 1 306 -7 384 313 27 34 chr3 15025062 15025209 -203011949 + MIR SINE MIR 98 243 -19 2296 65 3 19 chr3 15025492 15025802 -203011356 - AluSp SINE Alu -8 305 1 2130 122 0 3 chr3 15025930 15026233 -203010925 - AluSx SINE Alu -10 302 1 2299 89 0 0 chr3 15026760 15027063 -203010095 - AluSx SINE Alu -9 303 1 1481 216 24 0 chr3 15027064 15027360 -203009798 - L1ME LINE L1 -488 5676 5374 261 174 0 0 chr3 15027384 15027430 -203009728 + MLT2D LTR ERVL 4 49 -365 1831 163 0 0 chr3 15027430 15027725 -203009433 - AluJb SINE Alu -17 295 1 817 289 174 60 chr3 15027782 15028667 -203008491 - L2 LINE L2 -40 3232 2233 1791 175 0 0 chr3 15029889 15030181 -203006977 - AluJo SINE Alu -20 292 1 1273 160 5 0 chr3 15030223 15030423 -203006735 + AluJb SINE Alu 87 287 -25 2222 110 0 0 chr3 15030458 15030766 -203006392 + AluSc SINE Alu 2 309 0 1982 83 3 73 chr3 15031045 15031358 -203005800 + AluSg SINE Alu 1 291 -19 1858 154 0 10 chr3 15031407 15031705 -203005453 - AluSx SINE Alu -11 301 7 854 116 148 19 chr3 15031713 15031868 -203005290 - AluSg/x SINE Alu -16 293 119 2179 79 7 3 chr3 15032073 15032378 -203004780 + AluY SINE Alu 3 308 -3 2012 104 31 0 chr3 15032738 15033025 -203004133 - AluSx SINE Alu -16 296 1 639 227 35 0 chr3 15033689 15033830 -203003328 - MER5A DNA MER1_type -39 150 5 441 0 0 0 chr3 15033835 15033884 -203003274 + (TA)n Simple_repeat Simple_repeat 2 50 0 2156 102 3 3 chr3 15033885 15034188 -203002970 - AluSx SINE Alu -9 303 1 208 248 86 76 chr3 15034358 15034463 -203002695 + MIR SINE MIR 120 225 -37 815 108 8 8 chr3 15034505 15034634 -203002524 + AluSq/x SINE Alu 1 129 -184 491 88 0 15 chr3 15034634 15034724 -203002434 + Alu SINE Alu 225 313 0 1589 160 0 47 chr3 15036067 15036231 -203000927 - AluJb SINE Alu -15 297 152 2190 98 3 0 chr3 15036231 15036536 -203000622 - AluSp SINE Alu -7 306 1 1589 160 0 47 chr3 15036536 15036671 -203000487 - AluJb SINE Alu -160 152 12 2319 54 0 63 chr3 15036783 15037114 -203000044 - AluY SINE Alu -1 310 1 2152 121 0 3 chr3 15037214 15037521 -202999637 + AluSg SINE Alu 1 306 -4 2087 115 3 3 chr3 15037974 15038279 -202998879 + AluSc SINE Alu 1 305 -4 2140 92 14 0 chr3 15038577 15038869 -202998289 - AluSx SINE Alu -16 296 1 1907 130 7 7 chr3 15038983 15039275 -202997883 + AluSx SINE Alu 1 292 -20 1362 159 83 25 chr3 15039466 15039743 -202997415 - AluJo SINE Alu -19 293 1 2187 106 0 0 chr3 15039884 15040177 -202996981 - AluSg SINE Alu -15 295 3 717 218 0 0 chr3 15040178 15040311 -202996847 - FLAM_C SINE Alu -5 138 6 668 270 81 16 chr3 15041317 15041502 -202995656 + MIR SINE MIR 1 197 -65 9164 42 2 1 chr3 15041701 15042771 -202994387 + MER11C LTR ERVK 1 1071 0 756 71 0 0 chr3 15043680 15043778 -202993380 + AluY SINE Alu 205 302 -9 204 240 20 0 chr3 15044703 15044753 -202992405 + MIR SINE MIR 113 163 -99 23 33 0 0 chr3 15045455 15045485 -202991673 + AT_rich Low_complexity Low_complexity 1 30 0 1888 160 3 0 chr3 15046665 15046972 -202990186 + AluJb SINE Alu 1 308 -4 756 101 0 0 chr3 15047743 15047842 -202989316 - AluSg SINE Alu -209 101 3 562 184 0 0 chr3 15048162 15048265 -202988893 - AluJb SINE Alu -7 305 203 1831 174 0 0 chr3 15048277 15048581 -202988577 + AluJb SINE Alu 2 305 -7 2271 87 3 16 chr3 15048901 15049212 -202987946 + AluSg SINE Alu 3 309 -1 426 283 96 26 chr3 15049593 15049776 -202987382 + MIR SINE MIR 20 212 -50 1903 121 8 0 chr3 15049889 15050154 -202987004 + AluSq SINE Alu 1 267 -46 228 35 0 0 chr3 15050162 15050191 -202986967 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2167 94 0 7 chr3 15050357 15050656 -202986502 - AluSq SINE Alu -16 297 1 2223 98 0 3 chr3 15051710 15052006 -202985152 + AluSg SINE Alu 1 295 -15 22 0 0 0 chr3 15052353 15052375 -202984783 + AT_rich Low_complexity Low_complexity 1 22 0 1545 165 49 0 chr3 15052879 15053164 -202983994 + AluSx SINE Alu 1 299 -13 2265 97 0 0 chr3 15053967 15054276 -202982882 + AluSc SINE Alu 1 309 0 204 375 68 17 chr3 15054656 15054832 -202982326 + L2 LINE L2 2572 2756 -558 210 234 0 0 chr3 15054935 15054982 -202982176 - L2 LINE L2 0 3313 3267 1707 149 10 36 chr3 15055057 15055366 -202981792 + AluJb SINE Alu 1 301 -11 2059 111 0 0 chr3 15055366 15055645 -202981513 + AluSg SINE Alu 1 280 -30 2413 63 0 0 chr3 15055749 15056050 -202981108 - AluY SINE Alu -10 301 1 1481 216 24 0 chr3 15056051 15056347 -202980811 - L1ME LINE L1 -488 5676 5374 261 174 0 0 chr3 15056371 15056417 -202980741 + MLT2D LTR ERVL 4 49 -365 1831 163 0 0 chr3 15056417 15056712 -202980446 - AluJb SINE Alu -17 295 1 817 289 174 60 chr3 15056769 15057654 -202979504 - L2 LINE L2 -40 3232 2233 1791 175 0 0 chr3 15058876 15059168 -202977990 - AluJo SINE Alu -20 292 1 1273 160 5 0 chr3 15059210 15059410 -202977748 + AluJb SINE Alu 87 287 -25 2222 110 0 0 chr3 15059445 15059753 -202977405 + AluSc SINE Alu 2 309 0 1982 83 3 73 chr3 15060032 15060345 -202976813 + AluSg SINE Alu 1 291 -19 1858 154 0 10 chr3 15060394 15060692 -202976466 - AluSx SINE Alu -11 301 7 1705 109 87 11 chr3 15060700 15060975 -202976183 - AluSx SINE Alu -16 296 1 2324 53 0 0 chr3 15061003 15061308 -202975850 + AluY SINE Alu 1 305 0 1307 184 4 16 chr3 15061657 15061907 -202975251 - AluJo SINE Alu -63 249 3 819 131 0 51 chr3 15061917 15062054 -202975104 - FLAM_C SINE Alu -2 131 2 1908 128 10 3 chr3 15062092 15062381 -202974777 - AluSx SINE Alu -20 292 2 1193 178 4 21 chr3 15062398 15062634 -202974524 - AluJo SINE Alu -4 308 77 1526 125 4 93 chr3 15062634 15062941 -202974217 + AluSx SINE Alu 29 310 0 943 155 0 42 chr3 15062941 15063109 -202974049 + AluJo/FRAM SINE Alu 135 295 -17 2342 76 0 3 chr3 15063626 15063929 -202973229 + AluYa5 SINE Alu 1 302 -9 2334 89 3 10 chr3 15064174 15064487 -202972671 + AluY SINE Alu 1 311 0 180 0 0 0 chr3 15064721 15064741 -202972417 + (TAG)n Simple_repeat Simple_repeat 1 20 0 2427 101 0 0 chr3 15065414 15065720 -202971438 + AluSg SINE Alu 1 306 -4 576 252 8 8 chr3 15065724 15065851 -202971307 + MIR SINE MIR 28 154 -108 2219 114 0 3 chr3 15067078 15067377 -202969781 + AluSx SINE Alu 1 298 -14 5426 82 25 22 chr3 15067387 15067598 -202969560 - L1MA3 LINE L1 -28 6277 6068 2127 134 0 0 chr3 15067598 15067896 -202969262 + AluSx SINE Alu 1 298 -14 5426 82 25 22 chr3 15067896 15068499 -202968659 - L1MA3 LINE L1 -237 6068 5461 6232 32 17 8 chr3 15068512 15069220 -202967938 - SVA Other Other 0 1386 673 1031 121 0 0 chr3 15069648 15069788 -202967370 - AluSq/x SINE Alu -173 140 1 433 181 81 128 chr3 15070156 15070305 -202966853 - MER103 DNA DNA -1 165 24 274 219 78 0 chr3 15070402 15070466 -202966692 + L2 LINE L2 3153 3221 -51 223 316 10 41 chr3 15070530 15070628 -202966530 + (TGGA)n Simple_repeat Simple_repeat 1 95 0 679 261 101 20 chr3 15070697 15070896 -202966262 - MER58C DNA MER1_type 0 215 1 1900 102 98 0 chr3 15071655 15071919 -202965239 + AluSx SINE Alu 1 290 -22 1567 147 105 11 chr3 15072016 15072282 -202964876 + AluJb SINE Alu 1 291 -21 2463 53 0 0 chr3 15072290 15072595 -202964563 + AluY SINE Alu 1 305 0 1432 184 4 16 chr3 15072944 15073194 -202963964 - AluJo SINE Alu -63 249 3 838 131 0 51 chr3 15073204 15073341 -202963817 - FLAM_C SINE Alu -2 131 2 2052 128 10 3 chr3 15073379 15073668 -202963490 - AluSx SINE Alu -20 292 2 1278 182 4 21 chr3 15073685 15073921 -202963237 - AluJo SINE Alu -4 308 77 1640 125 4 93 chr3 15073921 15074228 -202962930 + AluSx SINE Alu 29 310 0 1022 155 0 42 chr3 15074228 15074396 -202962762 + AluJo/FRAM SINE Alu 135 295 -17 2488 76 0 3 chr3 15074913 15075216 -202961942 + AluYa5 SINE Alu 1 302 -9 2334 89 3 10 chr3 15075461 15075774 -202961384 + AluY SINE Alu 1 311 0 180 0 0 0 chr3 15076008 15076028 -202961130 + (TAG)n Simple_repeat Simple_repeat 1 20 0 2427 101 0 0 chr3 15076701 15077007 -202960151 + AluSg SINE Alu 1 306 -4 576 252 8 8 chr3 15077011 15077138 -202960020 + MIR SINE MIR 28 154 -108 2219 114 0 3 chr3 15078365 15078664 -202958494 + AluSx SINE Alu 1 298 -14 5426 82 25 22 chr3 15078674 15078885 -202958273 - L1MA3 LINE L1 -28 6277 6068 2127 134 0 0 chr3 15078885 15079183 -202957975 + AluSx SINE Alu 1 298 -14 5426 82 25 22 chr3 15079183 15079786 -202957372 - L1MA3 LINE L1 -237 6068 5461 7085 49 4 58 chr3 15079799 15080754 -202956404 - SVA Other Other 0 1386 483 2349 115 0 0 chr3 15081703 15082007 -202955151 - AluSx SINE Alu -8 304 1 2179 131 0 3 chr3 15082412 15082718 -202954440 + AluSx SINE Alu 2 306 -6 180 344 49 0 chr3 15083299 15083360 -202953798 + L2 LINE L2 2991 3054 -259 1676 153 0 62 chr3 15083412 15083719 -202953439 - AluJo SINE Alu -19 293 6 181 291 38 63 chr3 15083765 15083844 -202953314 + L3b LINE CR1 1427 1503 -80 2155 79 6 103 chr3 15083925 15084265 -202952893 + AluSx SINE Alu 1 307 -5 797 186 117 0 chr3 15084266 15084411 -202952747 + AluSp SINE Alu 135 296 -17 212 281 0 53 chr3 15084628 15084685 -202952473 - MIR3 SINE MIR -41 167 114 984 159 43 19 chr3 15084828 15085036 -202952122 - L1MB7 LINE L1 -47 6137 5925 2216 134 0 0 chr3 15085653 15085951 -202951207 + AluSx SINE Alu 1 298 -14 1453 65 0 0 chr3 15085951 15086119 -202951039 + AluSg/x SINE Alu 134 301 -11 555 141 24 0 chr3 15086301 15086386 -202950772 - AluSg/x SINE Alu -22 290 204 2169 46 0 77 chr3 15086542 15086851 -202950307 + AluY SINE Alu 19 305 0 1432 184 4 16 chr3 15087201 15087451 -202949707 - AluJo SINE Alu -63 249 3 826 139 0 51 chr3 15087461 15087598 -202949560 - FLAM_C SINE Alu -2 131 2 2242 107 7 3 chr3 15087636 15087927 -202949231 - AluSx SINE Alu -20 292 1 374 103 0 0 chr3 15088164 15088222 -202948936 + Tigger2 DNA MER2_type 2430 2487 -231 491 102 136 34 chr3 15088222 15088343 -202948815 - AluY SINE Alu 0 313 184 240 89 0 0 chr3 15088343 15088388 -202948770 + Alu SINE Alu 257 301 0 2109 130 3 16 chr3 15088399 15088714 -202948444 + AluSx SINE Alu 1 311 -1 686 198 9 0 chr3 15088736 15088852 -202948306 - FLAM_A SINE Alu -16 117 1 2205 120 0 10 chr3 15088917 15089216 -202947942 - AluSq SINE Alu -17 296 1 499 204 65 88 chr3 15089454 15089748 -202947410 - AluSx SINE Alu -17 295 9 1887 90 22 109 chr3 15089975 15090296 -202946862 + AluSx SINE Alu 1 293 -19 238 330 0 0 chr3 15091364 15091467 -202945691 - Alu SINE Alu -195 105 3 532 96 0 0 chr3 15091554 15091627 -202945531 + AluS SINE Alu 6 78 -235 643 194 0 39 chr3 15092700 15092829 -202944329 + FLAM_A SINE Alu 18 141 -1 2265 94 3 16 chr3 15093373 15093681 -202943477 - AluSg SINE Alu 0 310 7 2224 99 0 7 chr3 15093712 15094005 -202943153 - AluY SINE Alu -20 291 1 219 320 70 39 chr3 15094081 15094209 -202942949 + MIR SINE MIR 91 222 -40 24 0 0 0 chr3 15094384 15094408 -202942750 + AT_rich Low_complexity Low_complexity 1 24 0 443 232 0 65 chr3 15094498 15094636 -202942522 + MIR SINE MIR 50 178 -84 2405 153 108 6 chr3 15095281 15095686 -202941472 + L1MB7 LINE L1 5390 5863 -315 4669 49 26 0 chr3 15095686 15096262 -202940896 + LTR10C LTR ERV1 1 591 0 2405 153 108 6 chr3 15096262 15096384 -202940774 + L1MB7 LINE L1 5863 5971 -207 2149 132 0 13 chr3 15096438 15096742 -202940416 - AluSg SINE Alu -7 303 4 316 93 56 0 chr3 15096749 15096803 -202940355 + L1MB7 LINE L1 6119 6175 -9 349 261 91 53 chr3 15096910 15097179 -202939979 - L1MC4a LINE L1 -549 5572 5487 2426 68 0 36 chr3 15097179 15097486 -202939672 - AluY SINE Alu -15 296 1 349 261 91 53 chr3 15097486 15097563 -202939595 - L1MC4a LINE L1 -634 5487 5414 2408 59 24 0 chr3 15097573 15097860 -202939298 - AluY SINE Alu -17 294 1 866 160 0 13 chr3 15097952 15098102 -202939056 - AluJb SINE Alu -11 301 154 263 200 274 21 chr3 15098800 15098895 -202938263 - L1MA7 LINE L1 0 6291 6173 * 673 252 27 46 chr3 15098893 15099155 -202938003 + L1MA7 LINE L1 5893 6149 -142 223 282 0 47 chr3 15100947 15101032 -202936126 - MIR SINE MIR -117 145 65 199 227 0 0 chr3 15101187 15101231 -202935927 + L2 LINE L2 3268 3311 -2 2172 34 100 4 chr3 15102507 15102776 -202934382 + AluY SINE Alu 1 295 -16 302 248 101 9 chr3 15102815 15102924 -202934234 + L2 LINE L2 3024 3142 -171 186 245 20 20 chr3 15102992 15103041 -202934117 + L2 LINE L2 3264 3312 -1 2572 80 0 0 chr3 15105561 15105872 -202931286 + AluY SINE Alu 1 311 0 1185 106 0 0 chr3 15106204 15106296 -202930862 + (TGGG)n Simple_repeat Simple_repeat 1 272 0 1185 106 0 0 chr3 15106296 15106476 -202930682 + (TGGG)n Simple_repeat Simple_repeat 1 180 0 291 196 65 33 chr3 15106725 15106817 -202930341 - MIR SINE MIR -108 154 60 2322 120 0 0 chr3 15106839 15107148 -202930010 - AluSx SINE Alu -3 309 1 433 181 81 128 chr3 15107516 15107665 -202929493 - MER103 DNA DNA -1 165 24 274 219 78 0 chr3 15107762 15107826 -202929332 + L2 LINE L2 3153 3221 -51 223 316 10 41 chr3 15107890 15107988 -202929170 + (TGGA)n Simple_repeat Simple_repeat 1 95 0 679 261 101 20 chr3 15108057 15108256 -202928902 - MER58C DNA MER1_type 0 215 1 1900 102 98 0 chr3 15109015 15109279 -202927879 + AluSx SINE Alu 1 290 -22 1567 147 105 11 chr3 15109376 15109642 -202927516 + AluJo SINE Alu 1 291 -21 2594 66 0 0 chr3 15109650 15109955 -202927203 + AluY SINE Alu 1 305 -6 1169 45 0 0 chr3 15109961 15110093 -202927065 - AluY SINE Alu -179 132 1 2287 94 10 0 chr3 15110464 15110761 -202926397 + AluSq SINE Alu 1 300 -13 2426 90 0 0 chr3 15111586 15111896 -202925262 + AluY SINE Alu 1 310 -1 1841 171 26 0 chr3 15111983 15112287 -202924871 - AluJo SINE Alu 0 312 1 710 328 26 9 chr3 15112294 15112526 -202924632 + MIR SINE MIR 26 261 -1 2473 103 0 0 chr3 15112752 15113064 -202924094 - AluSx SINE Alu 0 312 1 433 380 54 0 chr3 15113159 15113364 -202923794 + MIR SINE MIR 33 248 -14 337 329 34 0 chr3 15113685 15113834 -202923324 - L1M4 LINE L1 -1938 4208 4055 553 115 0 0 chr3 15113916 15113994 -202923164 - U6 snRNA snRNA -29 78 1 387 264 28 9 chr3 15114522 15114628 -202922530 - MIR SINE MIR -135 127 20 276 303 94 59 chr3 15115056 15115310 -202921848 + L2 LINE L2 2969 3231 -41 312 70 0 0 chr3 15115411 15115454 -202921704 + (TG)n Simple_repeat Simple_repeat 2 44 0 782 186 0 0 chr3 15115521 15115645 -202921513 + FLAM_C SINE Alu 2 125 -18 25 83 0 0 chr3 15115731 15115791 -202921367 + AT_rich Low_complexity Low_complexity 1 60 0 2230 117 0 23 chr3 15115791 15116099 -202921059 - AluSx SINE Alu -11 301 1 1994 147 10 0 chr3 15116099 15116391 -202920767 - AluJb SINE Alu -17 295 1 764 164 16 23 chr3 15116409 15116537 -202920621 - FLAM_C SINE Alu -14 129 3 23 0 0 0 chr3 15116640 15116663 -202920495 + AT_rich Low_complexity Low_complexity 1 23 0 1505 162 36 56 chr3 15116673 15116975 -202920183 + AluJo SINE Alu 1 296 -16 2302 122 0 0 chr3 15116975 15117287 -202919871 + AluSx SINE Alu 1 312 0 1224 213 8 12 chr3 15117386 15117630 -202919528 + MIR SINE MIR 20 262 0 568 266 24 16 chr3 15118118 15118136 -202919022 + MIR SINE MIR 17 33 -215 2647 30 0 13 chr3 15118136 15118440 -202918718 + AluY SINE Alu 1 300 -11 568 266 24 16 chr3 15118440 15118592 -202918566 + MIR SINE MIR 33 187 -61 219 243 122 27 chr3 15118633 15118707 -202918451 - MIR SINE MIR -64 144 64 1510 109 41 0 chr3 15118789 15119010 -202918148 + MER30 DNA MER1_type 1 230 0 2398 80 0 10 chr3 15119111 15119412 -202917746 - AluY SINE Alu -13 298 1 2254 108 7 3 chr3 15119415 15119711 -202917447 - AluSp SINE Alu -16 297 1 690 175 50 8 chr3 15119711 15119831 -202917327 - AluJo/FLAM SINE Alu -186 126 2 405 251 131 0 chr3 15119844 15120035 -202917123 + L1ME LINE L1 5603 5818 -303 1742 91 5 0 chr3 15120177 15120396 -202916762 - AluSg SINE Alu -90 220 1 1329 95 6 0 chr3 15120396 15120565 -202916593 - AluSp SINE Alu -10 303 134 2298 96 10 3 chr3 15120565 15120866 -202916292 - AluY SINE Alu -8 303 1 1853 149 10 36 chr3 15120866 15121174 -202915984 - AluJb SINE Alu -12 300 1 212 234 0 0 chr3 15121249 15121296 -202915862 + L2 LINE L2 3267 3313 0 210 375 68 17 chr3 15121399 15121575 -202915583 - L2 LINE L2 -558 2756 2572 1398 157 0 15 chr3 15122309 15122570 -202914588 - AluY SINE Alu -54 257 1 2054 150 0 3 chr3 15122934 15123234 -202913924 + AluSx SINE Alu 1 299 -13 25 0 0 0 chr3 15123270 15123295 -202913863 + AT_rich Low_complexity Low_complexity 1 25 0 1075 70 8 0 chr3 15123296 15123425 -202913733 + AluSq/x SINE Alu 1 130 -183 2498 39 0 0 chr3 15123425 15123730 -202913428 + AluY SINE Alu 1 305 0 1432 184 4 16 chr3 15124079 15124329 -202912829 - AluJo SINE Alu -63 249 3 838 131 0 51 chr3 15124339 15124476 -202912682 - FLAM_C SINE Alu -2 131 2 2114 126 0 7 chr3 15124514 15124808 -202912350 - AluSx SINE Alu -20 292 1 2431 85 3 3 chr3 15124818 15125125 -202912033 - AluSp SINE Alu -6 307 1 366 264 66 9 chr3 15125128 15125234 -202911924 - MER5A DNA MER1_type 0 189 78 371 304 138 7 chr3 15125695 15125833 -202911325 + MIR SINE MIR 28 183 -79 2448 73 0 10 chr3 15126163 15126463 -202910695 + AluY SINE Alu 1 297 -14 1445 110 55 0 chr3 15126564 15126782 -202910376 - MER30 DNA MER1_type 0 230 1 219 243 122 27 chr3 15126864 15126938 -202910220 + MIR SINE MIR 64 144 -64 244 288 116 30 chr3 15127150 15127383 -202909775 + L2 LINE L2 2605 2857 -457 217 289 175 57 chr3 15127439 15127633 -202909525 + L2 LINE L2 2893 3109 -163 369 330 0 10 chr3 15127946 15128049 -202909109 + MIR SINE MIR 21 122 -140 1885 124 10 42 chr3 15128566 15128710 -202908448 + AluJo SINE Alu 1 148 -164 2496 70 0 3 chr3 15128710 15129011 -202908147 + AluY SINE Alu 1 300 -11 1885 124 10 42 chr3 15129011 15129173 -202907985 + AluJo SINE Alu 148 297 -15 739 155 23 16 chr3 15129572 15129701 -202907457 + AluJo SINE Alu 6 135 -177 885 189 38 32 chr3 15130192 15130377 -202906781 - MER5A DNA MER1_type 0 189 4 2473 39 19 26 chr3 15130434 15130741 -202906417 + AluY SINE Alu 1 305 -6 1094 287 76 12 chr3 15131116 15131548 -202905610 + MLT1J LTR MaLR 2 461 -50 234 0 0 0 chr3 15131718 15131744 -202905414 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1779 148 3 11 chr3 15131839 15132123 -202905035 - AluSx SINE Alu -30 282 1 24 85 0 0 chr3 15132200 15132259 -202904899 + AT_rich Low_complexity Low_complexity 1 59 0 1990 117 10 45 chr3 15132625 15132933 -202904225 - AluSx SINE Alu -15 297 1 2200 103 14 0 chr3 15133215 15133507 -202903651 + AluSx SINE Alu 6 301 -11 262 190 0 127 chr3 15133676 15133731 -202903427 + Tigger2 DNA MER2_type 1 31 -403 2013 150 3 3 chr3 15133731 15134024 -202903134 - AluSx SINE Alu -19 293 1 262 190 0 127 chr3 15134024 15134047 -202903111 + Tigger2 DNA MER2_type 31 55 -379 * 1163 118 98 10 chr3 15134031 15134234 -202902924 + Tigger2 DNA MER2_type 2267 2487 -231 491 102 136 34 chr3 15134234 15134355 -202902803 - AluY SINE Alu 0 313 184 240 89 0 0 chr3 15134355 15134400 -202902758 + Alu SINE Alu 256 300 0 2152 132 0 3 chr3 15134411 15134706 -202902452 + AluSx SINE Alu 1 294 -18 1399 73 0 0 chr3 15135268 15135433 -202901725 - AluSg/x SINE Alu -14 296 132 2216 134 0 0 chr3 15135433 15135731 -202901427 - AluSx SINE Alu -14 298 1 984 159 43 19 chr3 15136348 15136556 -202900602 + L1MB7 LINE L1 5925 6137 -47 212 281 0 53 chr3 15136699 15136756 -202900402 + MIR3 SINE MIR 114 167 -41 797 186 117 0 chr3 15136973 15137118 -202900040 - AluSp SINE Alu -17 296 135 2155 79 6 103 chr3 15137119 15137459 -202899699 - AluSx SINE Alu -5 307 1 181 291 38 63 chr3 15137540 15137619 -202899539 - L3b LINE CR1 -80 1503 1427 1685 153 0 62 chr3 15137665 15137972 -202899186 + AluJo SINE Alu 6 293 -19 180 344 49 0 chr3 15138024 15138085 -202899073 - L2 LINE L2 -259 3054 2991 2340 96 3 0 chr3 15138666 15138968 -202898190 - AluSg1 SINE Alu -6 303 1 2428 93 3 0 chr3 15138968 15139270 -202897888 - AluSx SINE Alu -9 303 1 468 183 0 0 chr3 15139689 15139771 -202897387 + AluSp/q SINE Alu 226 307 -6 180 0 0 0 chr3 15139930 15139950 -202897208 + (CTA)n Simple_repeat Simple_repeat 1 20 0 2234 102 3 10 chr3 15140184 15140497 -202896661 - AluY SINE Alu 0 311 1 2488 76 0 3 chr3 15140744 15141047 -202896111 - AluYa5 SINE Alu -9 302 1 1022 155 0 42 chr3 15141564 15141732 -202895426 - FRAM SINE Alu -17 159 1 189 74 0 0 chr3 15141732 15141759 -202895399 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 1913 101 0 88 chr3 15141760 15142066 -202895092 - AluSc SINE Alu -30 279 1 1685 165 49 0 chr3 15142869 15143154 -202894004 - AluSx SINE Alu -13 299 1 22 0 0 0 chr3 15143658 15143680 -202893478 + AT_rich Low_complexity Low_complexity 1 22 0 2370 98 0 3 chr3 15144027 15144323 -202892835 - AluSg SINE Alu -15 295 1 2240 93 0 27 chr3 15145377 15145678 -202891480 + AluSx SINE Alu 1 293 -19 247 154 0 0 chr3 15145679 15145718 -202891440 - Alu SINE Alu -177 125 87 424 233 158 14 chr3 15145721 15145867 -202891291 + L2 LINE L2 3131 3297 -16 * 474 267 12 121 chr3 15145862 15146095 -202891063 + L2 LINE L2 3025 3215 -98 2439 85 3 0 chr3 15146095 15146400 -202890758 - AluSg SINE Alu -4 306 1 474 267 12 121 chr3 15146400 15146488 -202890670 + L2 LINE L2 3215 3311 -2 203 0 37 0 chr3 15147255 15147282 -202889876 + (TG)n Simple_repeat Simple_repeat 2 29 0 1661 81 5 5 chr3 15147333 15147543 -202889615 - AluSq SINE Alu -28 285 76 2602 49 7 3 chr3 15147544 15147851 -202889307 - AluY SINE Alu -3 308 1 614 114 0 0 chr3 15147855 15147934 -202889224 - AluSq SINE Alu -232 80 2 497 172 90 46 chr3 15148267 15148419 -202888739 + MIR SINE MIR 43 211 -51 2211 113 10 0 chr3 15148463 15148764 -202888394 - AluSx SINE Alu -6 306 3 1928 176 107 11 chr3 15148931 15149237 -202887921 - L1MB8 LINE L1 -9 6169 5805 2435 83 0 3 chr3 15149237 15149537 -202887621 - AluY SINE Alu -12 299 1 1928 176 107 11 chr3 15149537 15149678 -202887480 - L1MB8 LINE L1 -373 5805 5679 1411 195 33 0 chr3 15149678 15149919 -202887239 - AluJb SINE Alu -63 249 1 476 148 168 0 chr3 15149920 15150021 -202887137 - L1MB8 LINE L1 -571 5607 5490 2425 105 0 0 chr3 15150021 15150327 -202886831 - AluSx SINE Alu 0 312 7 1591 101 18 0 chr3 15150340 15150558 -202886600 - AluSg/x SINE Alu -18 294 73 210 37 0 0 chr3 15150558 15150585 -202886573 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 700 248 21 7 chr3 15150585 15150730 -202886428 - FRAM SINE Alu -19 147 1 423 283 96 26 chr3 15150844 15151027 -202886131 - MIR SINE MIR -50 212 20 2436 87 3 16 chr3 15151407 15151719 -202885439 - AluSg SINE Alu 0 310 3 1780 125 4 7 chr3 15152590 15152869 -202884289 - AluY SINE Alu -33 278 1 23 0 0 0 chr3 15152927 15152950 -202884208 + AT_rich Low_complexity Low_complexity 1 23 0 1930 168 26 8 chr3 15153233 15153614 -202883544 - L1MB4 LINE L1 -1 6179 5792 2349 103 0 3 chr3 15153617 15153919 -202883239 + AluSc SINE Alu 1 301 -8 199 263 0 35 chr3 15154381 15154438 -202882720 + MIR SINE MIR 108 162 -100 1844 146 28 0 chr3 15154467 15154755 -202882403 - AluJo SINE Alu -16 296 1 1887 147 0 60 chr3 15156389 15156708 -202880450 - AluJb SINE Alu -12 300 1 1892 98 0 0 chr3 15157118 15157354 -202879804 - AluSx SINE Alu -37 275 40 400 48 32 0 chr3 15157943 15158006 -202879152 + (CA)n Simple_repeat Simple_repeat 1 65 0 189 0 0 0 chr3 15158130 15158151 -202879007 + (TTCA)n Simple_repeat Simple_repeat 3 23 0 589 250 36 30 chr3 15158297 15158583 -202878575 - L2 LINE L2 -250 3063 2783 2502 51 0 3 chr3 15158722 15159017 -202878141 - AluY SINE Alu -17 294 1 356 241 12 18 chr3 15159179 15159290 -202877868 + MLT1I LTR MaLR 318 409 0 1235 140 0 0 chr3 15159583 15159761 -202877397 + AluSg/x SINE Alu 135 312 0 523 224 35 9 chr3 15159890 15160006 -202877152 + MIR SINE MIR 38 156 -106 204 365 56 24 chr3 15159970 15160096 -202877062 - MIR SINE MIR -56 152 23 * 596 310 101 39 chr3 15160609 15161062 -202876096 + L2 LINE L2 2737 3296 -17 2020 120 7 48 chr3 15161069 15161204 -202875954 + AluSx SINE Alu 1 140 -172 2366 74 3 0 chr3 15161204 15161519 -202875639 + AluSp SINE Alu 1 316 0 2020 120 7 48 chr3 15161519 15161691 -202875467 + AluSx SINE Alu 140 296 -16 512 223 76 38 chr3 15162294 15162451 -202874707 + MER103 DNA DNA 1 163 -3 823 148 65 13 chr3 15162894 15163049 -202874109 + MER46A DNA MER2_type 13 175 -61 1018 175 0 63 chr3 15163049 15163255 -202873903 + AluJo SINE Alu 120 312 0 952 122 0 98 chr3 15163937 15164125 -202873033 - AluSg/x SINE Alu 0 303 132 2236 112 3 6 chr3 15164125 15164437 -202872721 - AluSx SINE Alu -1 311 1 2492 75 3 3 chr3 15164447 15164754 -202872404 - AluSp SINE Alu -6 307 1 965 168 38 32 chr3 15164757 15164942 -202872216 - MER5A DNA MER1_type 0 189 4 2493 39 19 26 chr3 15164999 15165306 -202871852 + AluY SINE Alu 1 305 -6 1191 287 76 12 chr3 15165681 15166113 -202871045 + MLT1J LTR MaLR 2 461 -50 2061 70 3 14 chr3 15166283 15166594 -202870564 - AluY SINE Alu 0 308 1 1905 150 0 3 chr3 15166958 15167258 -202869900 + AluSx SINE Alu 1 299 -13 25 0 0 0 chr3 15167294 15167319 -202869839 + AT_rich Low_complexity Low_complexity 1 25 0 1012 70 8 0 chr3 15167320 15167449 -202869709 + AluSq/x SINE Alu 1 130 -183 2414 56 3 0 chr3 15167449 15167755 -202869403 + AluY SINE Alu 1 307 -4 2279 99 0 3 chr3 15167761 15168074 -202869084 + AluSx SINE Alu 1 312 0 2091 145 69 57 chr3 15168075 15168422 -202868736 - MER65A LTR ERV1 -33 412 58 1877 104 46 7 chr3 15168422 15168702 -202868456 - AluSx SINE Alu -21 291 1 2091 145 69 57 chr3 15168702 15168761 -202868397 - MER65A LTR ERV1 -387 58 1 331 273 244 13 chr3 15169475 15169783 -202867375 + L2 LINE L2 2926 3304 -9 1864 127 0 11 chr3 15170152 15170435 -202866723 + AluSx SINE Alu 11 290 -22 1141 129 16 5 chr3 15170852 15171038 -202866120 - AluSg/x SINE Alu -18 292 105 1808 164 0 0 chr3 15171087 15171385 -202865773 + AluSx SINE Alu 1 298 -14 225 222 0 0 chr3 15171387 15171441 -202865717 - MER20B DNA MER1_type -726 57 4 1657 173 10 7 chr3 15171625 15171920 -202865238 - AluJb SINE Alu -7 305 10 1982 109 3 7 chr3 15171981 15172275 -202864883 + AluSg SINE Alu 1 293 -17 2027 109 3 16 chr3 15172287 15172590 -202864568 + AluSx SINE Alu 3 301 -11 827 143 8 0 chr3 15172801 15172927 -202864231 + FLAM_C SINE Alu 1 127 -16 21 36 0 0 chr3 15173002 15173030 -202864128 + AT_rich Low_complexity Low_complexity 1 28 0 1693 121 0 112 chr3 15173251 15173591 -202863567 - AluJo SINE Alu -10 302 1 298 237 130 46 chr3 15173594 15173725 -202863433 - L2 LINE L2 -12 3301 3160 195 42 0 0 chr3 15173768 15173792 -202863366 + (TTAAA)n Simple_repeat Simple_repeat 3 26 0 610 261 112 11 chr3 15174119 15174307 -202862851 - MIR SINE MIR -18 244 38 183 280 192 48 chr3 15175137 15175262 -202861896 + MIR SINE MIR 119 261 -1 373 217 26 11 chr3 15175272 15175428 -202861730 + MIR SINE MIR 3 225 -37 335 332 175 15 chr3 15175494 15175762 -202861396 - L2 LINE L2 -38 3234 2924 2045 47 4 12 chr3 15176168 15176426 -202860732 + L1PA4 LINE L1 5899 6154 -1 2108 101 10 3 chr3 15176525 15176831 -202860327 - AluY SINE Alu -3 308 1 449 62 10 82 chr3 15177007 15177045 -202860113 - L1MB3 LINE L1 0 6183 6144 1673 123 0 12 chr3 15177045 15177298 -202859860 - AluSx SINE Alu -14 298 49 449 62 10 82 chr3 15177298 15177356 -202859802 - L1MB3 LINE L1 -39 6144 6094 746 35 9 60 chr3 15177382 15177498 -202859660 + L1PA6 LINE L1 6045 6154 0 917 154 12 117 chr3 15177515 15177755 -202859403 + AluJo SINE Alu 86 300 -12 1376 154 17 80 chr3 15177766 15178065 -202859093 - AluJo SINE Alu -30 282 3 327 377 84 0 chr3 15178331 15178498 -202858660 + L2 LINE L2 2568 2748 -566 2032 102 0 3 chr3 15178522 15178806 -202858352 + AluY SINE Alu 18 300 -11 2200 113 0 3 chr3 15179714 15180023 -202857135 - AluSc SINE Alu 0 309 2 1178 176 10 0 chr3 15180058 15180257 -202856901 - AluJb SINE Alu -25 287 87 1791 175 0 0 chr3 15180299 15180591 -202856567 + AluJo SINE Alu 1 292 -20 582 138 21 0 chr3 15181450 15181544 -202855614 - AluY SINE Alu -214 97 2 1637 192 75 23 chr3 15181544 15181669 -202855489 + L1M3 LINE L1 4726 4843 -1303 2246 64 0 55 chr3 15181669 15181981 -202855177 - AluY SINE Alu -16 295 1 1637 192 75 23 chr3 15181981 15182241 -202854917 + L1M3 LINE L1 4843 5131 -1015 2055 101 9 28 chr3 15182921 15183238 -202853920 + AluSx SINE Alu 1 311 -1 1128 149 65 42 chr3 15183677 15183720 -202853438 + L1M3 LINE L1 5106 5147 -1033 1990 133 3 0 chr3 15183720 15184020 -202853138 + AluSc SINE Alu 1 301 -8 1128 149 65 42 chr3 15184020 15184200 -202852958 + L1M3 LINE L1 5147 5333 -847 1564 201 0 3 chr3 15184200 15184503 -202852655 + AluJb SINE Alu 1 302 -10 1128 149 65 42 chr3 15184503 15184649 -202852509 + L1M3 LINE L1 5333 5474 -706 852 194 0 12 chr3 15184650 15184810 -202852348 + FRAM SINE Alu 1 150 -26 36 0 0 0 chr3 15184810 15184846 -202852312 + AT_rich Low_complexity Low_complexity 1 36 0 1929 136 13 3 chr3 15184860 15185176 -202851982 + L1M3 LINE L1 5478 5796 -384 2088 106 0 0 chr3 15185177 15185492 -202851666 + AluSx SINE Alu 1 315 0 28 0 0 0 chr3 15185503 15185531 -202851627 + AT_rich Low_complexity Low_complexity 1 28 0 2304 83 0 0 chr3 15186066 15186368 -202850790 - AluSx SINE Alu -9 303 2 2304 68 7 10 chr3 15186773 15187082 -202850076 + AluY SINE Alu 1 308 -3 2012 104 31 0 chr3 15187443 15187730 -202849428 - AluSx SINE Alu -16 296 1 528 246 87 56 chr3 15187835 15187939 -202849219 - MIR SINE MIR 0 262 163 2188 73 7 13 chr3 15187939 15188239 -202848919 + AluY SINE Alu 1 298 -13 528 246 87 56 chr3 15188239 15188305 -202848853 - MIR SINE MIR -99 163 83 2128 102 14 0 chr3 15188305 15188599 -202848559 + AluSq SINE Alu 1 298 -15 528 246 87 56 chr3 15188599 15188622 -202848536 - MIR SINE MIR -179 83 62 567 160 38 9 chr3 15188727 15188833 -202848325 + L1MB4 LINE L1 5367 5475 -699 853 180 0 18 chr3 15188833 15189000 -202848158 + FRAM SINE Alu 1 156 -20 2230 75 0 0 chr3 15189027 15189351 -202847807 - AluY SINE Alu 0 324 1 1983 151 36 23 chr3 15189365 15189676 -202847482 + L1MB4 LINE L1 5478 5797 -383 1980 113 0 0 chr3 15189676 15189988 -202847170 + AluSx SINE Alu 1 312 0 1983 151 36 23 chr3 15189988 15190065 -202847093 + L1MB4 LINE L1 5797 5872 -308 2144 115 7 0 chr3 15190065 15190370 -202846788 + AluSx SINE Alu 1 307 -5 2165 113 0 0 chr3 15190420 15190731 -202846427 + AluY SINE Alu 1 311 0 275 119 24 0 chr3 15190744 15190786 -202846372 + LTR23 LTR ERV1 317 359 -78 201 263 0 0 chr3 15190786 15190843 -202846315 + A-rich Low_complexity Low_complexity 1 57 0 2088 105 0 32 chr3 15191258 15191573 -202845585 - AluSx SINE Alu -7 305 1 708 172 52 0 chr3 15191770 15191904 -202845254 - FLAM_C SINE Alu -1 142 2 1705 153 7 7 chr3 15191916 15192203 -202844955 - AluJo SINE Alu -25 287 1 921 116 7 14 chr3 15192524 15192671 -202844487 + AluSg/x SINE Alu 157 302 -8 22 0 0 0 chr3 15192853 15192875 -202844283 + AT_rich Low_complexity Low_complexity 1 22 0 2146 91 7 0 chr3 15194509 15194794 -202842364 - AluSg SINE Alu -21 289 3 717 218 0 0 chr3 15194795 15194928 -202842230 - FLAM_C SINE Alu -5 138 6 809 179 0 0 chr3 15196100 15196234 -202840924 + AluJo SINE Alu 1 134 -178 2312 46 7 0 chr3 15196234 15196543 -202840615 + AluY SINE Alu 1 311 0 2048 87 7 14 chr3 15196549 15196869 -202840289 + AluSq SINE Alu 1 318 0 546 292 109 10 chr3 15197185 15197377 -202839781 - MIR SINE MIR -14 248 38 198 283 0 17 chr3 15197528 15197588 -202839570 + L2 LINE L2 3189 3247 -25 1471 128 9 133 chr3 15197604 15197949 -202839209 + AluJo SINE Alu 1 302 -10 207 0 0 0 chr3 15198281 15198304 -202838854 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 808 165 0 0 chr3 15198304 15198425 -202838733 - AluJb SINE Alu -190 122 2 2114 96 0 17 chr3 15198641 15198933 -202838225 - AluSx SINE Alu -16 296 10 22 0 0 0 chr3 15199712 15199734 -202837424 + AT_rich Low_complexity Low_complexity 1 22 0 384 313 27 34 chr3 15200239 15200386 -202836772 - MIR SINE MIR -19 243 98 2168 88 0 38 chr3 15200428 15200746 -202836412 - AluSq SINE Alu -7 306 1 1595 180 20 7 chr3 15200749 15201044 -202836114 - AluJo SINE Alu -8 304 6 189 283 0 33 chr3 15201416 15201476 -202835682 - MIR3 SINE MIR -138 70 13 198 355 32 21 chr3 15201910 15202003 -202835155 - MIR SINE MIR -83 125 32 224 340 68 19 chr3 15202643 15202746 -202834412 + L3 LINE CR1 624 731 -846 1913 174 26 5 chr3 15202865 15203244 -202833914 + L1MB4 LINE L1 5793 6179 -1 229 313 12 0 chr3 15203250 15203333 -202833825 + L1MC/D LINE L1 5814 5897 -1911 24 0 0 0 chr3 15203520 15203544 -202833614 + AT_rich Low_complexity Low_complexity 1 24 0 1894 141 3 19 chr3 15203691 15204004 -202833154 - AluSc SINE Alu -1 308 1 2209 87 0 7 chr3 15204015 15204315 -202832843 - AluY SINE Alu -13 298 1 313 205 169 0 chr3 15204530 15204613 -202832545 + MIR SINE MIR 117 213 -49 646 173 55 0 chr3 15204913 15205023 -202832135 + FLAM_C SINE Alu 2 117 -26 2111 116 7 0 chr3 15205033 15205327 -202831831 + AluSp SINE Alu 1 296 -17 2486 65 0 0 chr3 15205329 15205638 -202831520 + AluSc SINE Alu 1 309 0 1857 84 80 14 chr3 15205648 15205923 -202831235 + AluSg1 SINE Alu 1 293 -16 1781 117 57 11 chr3 15206115 15206396 -202830762 + AluSx SINE Alu 1 294 -18 311 183 158 58 chr3 15207086 15207206 -202829952 + MIR SINE MIR 75 206 -56 21 0 0 0 chr3 15207207 15207228 -202829930 + AT_rich Low_complexity Low_complexity 1 21 0 310 327 175 6 chr3 15207229 15207544 -202829614 + L2 LINE L2 1630 1997 -1317 2748 13 0 3 chr3 15207545 15207857 -202829301 - AluYa5 SINE Alu 0 311 1 1900 100 14 10 chr3 15207863 15208152 -202829006 - AluY SINE Alu -20 291 2 873 110 0 22 chr3 15208152 15208288 -202828870 - AluSq/x SINE Alu -177 135 3 794 176 7 0 chr3 15208294 15208430 -202828728 - FRAM SINE Alu -8 168 32 2132 120 0 0 chr3 15208636 15208935 -202828223 - AluSx SINE Alu -13 299 1 1041 188 0 0 chr3 15208990 15209166 -202827992 - AluJb SINE Alu -15 297 122 270 343 9 26 chr3 15209461 15209680 -202827478 + CT-rich Low_complexity Low_complexity 1 215 0 2116 53 3 73 chr3 15211414 15211740 -202825418 - AluY SINE Alu 0 305 1 374 96 0 0 chr3 15212903 15212955 -202824203 - AluSx SINE Alu -8 293 242 1170 87 0 19 chr3 15212955 15213116 -202824042 - AluSx SINE Alu -154 158 1 2111 114 3 0 chr3 15215303 15215593 -202821565 + AluSg SINE Alu 1 291 -19 301 188 145 34 chr3 15216035 15216152 -202821006 - L1ME4a LINE L1 -16 6105 5976 1368 162 0 26 chr3 15216269 15216498 -202820660 - AluJb SINE Alu -5 307 85 886 125 8 0 chr3 15216532 15216660 -202820498 - FLAM_C SINE Alu -3 130 2 535 87 0 33 chr3 15216689 15216781 -202820377 + FLAM_C SINE Alu 55 143 0 336 324 83 0 chr3 15216833 15216978 -202820180 - MIR3 SINE MIR 0 208 52 22 0 0 0 chr3 15217252 15217274 -202819884 + AT_rich Low_complexity Low_complexity 1 22 0 1529 191 7 7 chr3 15217279 15217562 -202819596 + AluJo SINE Alu 6 288 -24 218 269 104 0 chr3 15217679 15217746 -202819412 - L2 LINE L2 -50 3222 3149 333 176 114 13 chr3 15217994 15218116 -202819042 + L1M4 LINE L1 5226 5364 -815 2030 126 54 0 chr3 15218116 15218410 -202818748 + AluSx SINE Alu 1 310 -2 333 176 114 13 chr3 15218410 15218427 -202818731 + L1M4 LINE L1 5364 5378 -801 540 194 0 0 chr3 15218441 15218539 -202818619 + U13 snRNA snRNA 5 102 -2 1877 142 55 2 chr3 15218560 15219010 -202818148 + L1M2 LINE L1 5193 5778 -534 1198 192 70 18 chr3 15219119 15219405 -202817753 + AluSx SINE Alu 2 302 0 224 304 132 24 chr3 15220171 15220467 -202816691 - L2 LINE L2 -20 3252 2925 2099 145 69 57 chr3 15221181 15221240 -202815918 + MER65A LTR ERV1 1 58 -387 1998 104 46 7 chr3 15221240 15221520 -202815638 + AluSx SINE Alu 1 291 -21 2099 145 69 57 chr3 15221520 15221867 -202815291 + MER65A LTR ERV1 58 412 -33 2525 51 3 13 chr3 15221868 15222182 -202814976 - AluY SINE Alu 0 311 1 1725 176 20 7 chr3 15222185 15222480 -202814678 - AluJo SINE Alu -8 304 6 534 259 113 8 chr3 15222593 15222832 -202814326 + L1ME4a LINE L1 5820 6083 -38 1943 106 50 14 chr3 15223086 15223396 -202813762 + AluSq SINE Alu 1 313 0 428 228 101 10 chr3 15224636 15224828 -202812330 + MLT1H LTR MaLR 20 242 -307 1940 139 10 10 chr3 15224855 15225158 -202812000 + AluSx SINE Alu 1 303 -9 2298 80 3 10 chr3 15225403 15225703 -202811455 + AluY SINE Alu 1 298 -13 180 0 0 0 chr3 15225950 15225970 -202811188 + (TAG)n Simple_repeat Simple_repeat 1 20 0 2400 101 0 0 chr3 15226643 15226949 -202810209 + AluSg SINE Alu 1 306 -4 522 252 8 8 chr3 15226953 15227080 -202810078 + MIR SINE MIR 28 154 -108 2163 117 0 3 chr3 15228307 15228605 -202808553 + AluSx SINE Alu 1 297 -15 8551 120 49 54 chr3 15228616 15228827 -202808331 - L1MA3 LINE L1 -28 6277 6067 2105 132 0 0 chr3 15228827 15229122 -202808036 + AluSx SINE Alu 1 295 -17 8551 120 49 54 chr3 15229122 15229741 -202807417 - L1MA3 LINE L1 -238 6067 5447 6974 57 6 70 chr3 15229741 15230763 -202806395 - SVA Other Other 0 1386 430 8551 120 49 54 chr3 15230763 15230812 -202806346 - L1MA3 LINE L1 -858 5447 5399 6252 65 33 5 chr3 15230812 15231640 -202805518 - SVA Other Other -518 868 18 8551 120 49 54 chr3 15231640 15233283 -202803875 - L1MA3 LINE L1 -906 5399 3781 2291 99 0 10 chr3 15233283 15233586 -202803572 - AluSx SINE Alu -12 300 1 8551 120 49 54 chr3 15233586 15233715 -202803443 - L1MA3 LINE L1 -2524 3781 3653 2245 117 0 0 chr3 15234075 15234375 -202802783 + AluSx SINE Alu 1 300 -12 183 211 158 0 chr3 15234471 15234528 -202802630 + MIR SINE MIR 67 132 -130 1563 108 0 0 chr3 15235801 15236004 -202801154 - AluSg/x SINE Alu -20 290 88 453 292 56 12 chr3 15236783 15236944 -202800214 + MIR SINE MIR 75 242 -20 185 349 40 34 chr3 15237419 15237568 -202799590 + L2 LINE L2 2598 2747 -567 2117 139 0 7 chr3 15237645 15237947 -202799211 - AluSx SINE Alu -12 300 1 1679 116 86 60 chr3 15238098 15238400 -202798758 + AluSx SINE Alu 1 310 -2 2208 110 7 3 chr3 15238558 15238867 -202798291 + AluSx SINE Alu 1 310 -2 2154 23 4 12 chr3 15238964 15239223 -202797935 - L1PA4 LINE L1 0 6155 5899 614 281 95 18 chr3 15239458 15239679 -202797479 - MIR SINE MIR -10 252 15 2130 119 128 44 chr3 15239718 15240131 -202797027 - MER83 LTR ERV1 0 448 1 435 253 89 53 chr3 15240899 15240917 -202796241 + MIR SINE MIR 66 82 -180 2257 102 14 0 chr3 15240917 15241211 -202795947 - AluSq SINE Alu -15 298 1 435 253 89 53 chr3 15241211 15241277 -202795881 + MIR SINE MIR 82 144 -118 2318 73 7 13 chr3 15241277 15241577 -202795581 - AluY SINE Alu -13 298 1 435 253 89 53 chr3 15241577 15241681 -202795477 + MIR SINE MIR 144 262 0 1774 204 0 0 chr3 15241786 15242094 -202795064 + AluJb SINE Alu 1 308 -4 2515 205 57 29 chr3 15242094 15242747 -202794411 + L1MB4 LINE L1 4469 5139 -1007 2290 123 0 0 chr3 15243437 15243746 -202793412 + AluSc SINE Alu 1 309 0 1191 136 57 42 chr3 15243747 15243944 -202793214 + L1MB4 LINE L1 5123 5332 -848 1674 201 0 3 chr3 15243944 15244247 -202792911 + AluJb SINE Alu 1 302 -10 1191 136 57 42 chr3 15244247 15244400 -202792758 + L1MB4 LINE L1 5332 5481 -699 853 200 0 0 chr3 15244404 15244554 -202792604 + FRAM SINE Alu 1 150 -26 36 0 0 0 chr3 15244554 15244590 -202792568 + AT_rich Low_complexity Low_complexity 1 36 0 3741 147 17 44 chr3 15244604 15244921 -202792237 + L1MB4 LINE L1 5478 5802 -378 2213 106 0 0 chr3 15244921 15245236 -202791922 + AluSx SINE Alu 1 315 0 3741 147 17 44 chr3 15245236 15245249 -202791909 + L1MB4 LINE L1 5802 5814 -366 225 0 0 0 chr3 15245249 15245274 -202791884 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 2488 69 0 0 chr3 15245278 15245569 -202791589 - AluY SINE Alu -20 291 1 3741 147 17 44 chr3 15245569 15245953 -202791205 + L1MB4 LINE L1 5817 6179 -1 237 313 12 0 chr3 15245959 15246042 -202791116 + L1MC/D LINE L1 5814 5897 -1911 23 0 0 0 chr3 15246236 15246259 -202790899 + AT_rich Low_complexity Low_complexity 1 23 0 2631 55 0 0 chr3 15246317 15246626 -202790532 + AluY SINE Alu 1 309 -2 534 103 0 0 chr3 15246626 15246704 -202790454 + (TA)n Simple_repeat Simple_repeat 2 79 0 1774 145 0 4 chr3 15246805 15247090 -202790068 - AluJb SINE Alu 0 306 23 191 143 114 0 chr3 15247291 15247326 -202789832 + L2 LINE L2 3221 3259 -13 228 86 0 0 chr3 15247471 15247506 -202789652 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 7480 18 1 0 chr3 15247506 15248345 -202788813 - L1PA3 LINE L1 -6 6149 5310 1322 104 0 6 chr3 15248345 15248518 -202788640 + AluSg/x SINE Alu 122 293 -17 266 179 179 32 chr3 15249168 15249263 -202787895 + MIR SINE MIR 75 183 -79 21 0 0 0 chr3 15249289 15249310 -202787848 + AT_rich Low_complexity Low_complexity 1 21 0 199 327 175 6 chr3 15249311 15249626 -202787532 + L2 LINE L2 1630 1997 -1317 2902 10 0 3 chr3 15249626 15249938 -202787220 - AluYa5 SINE Alu 0 311 1 2121 111 17 0 chr3 15249944 15250232 -202786926 - AluSp SINE Alu -20 293 1 2482 70 3 0 chr3 15250393 15250692 -202786466 - AluY SINE Alu -9 302 3 267 357 60 12 chr3 15250973 15251225 -202785933 + L2 LINE L2 2806 3069 -203 2202 113 0 3 chr3 15252432 15252734 -202784424 + AluSq SINE Alu 1 301 -12 497 289 81 9 chr3 15254085 15254296 -202782862 + L3 LINE CR1 626 851 -726 2403 83 0 3 chr3 15254684 15254984 -202782174 + AluY SINE Alu 1 299 -12 2265 115 0 0 chr3 15255137 15255441 -202781717 + AluSg SINE Alu 1 304 -6 2355 104 0 0 chr3 15255570 15255877 -202781281 + AluY SINE Alu 2 308 -3 273 119 24 0 chr3 15255893 15255935 -202781223 + LTR23 LTR ERV1 317 359 -78 210 259 0 0 chr3 15255935 15255993 -202781165 + A-rich Low_complexity Low_complexity 1 58 0 372 96 0 0 chr3 15256439 15256491 -202780667 - AluSx SINE Alu -8 293 242 1241 87 0 19 chr3 15256491 15256652 -202780506 - AluSx SINE Alu -154 158 1 2111 114 3 0 chr3 15258842 15259132 -202778026 + AluSg SINE Alu 1 291 -19 301 188 145 34 chr3 15259579 15259696 -202777462 - L1ME4a LINE L1 -16 6105 5976 1818 162 3 23 chr3 15259813 15260122 -202777036 - AluJb SINE Alu -5 307 5 280 170 0 19 chr3 15260521 15260574 -202776584 - MER5B DNA MER1_type -122 56 5 2433 72 7 7 chr3 15260702 15261008 -202776150 + AluY SINE Alu 1 306 -5 24 0 0 0 chr3 15261456 15261480 -202775678 + AT_rich Low_complexity Low_complexity 1 24 0 233 311 0 0 chr3 15261839 15261900 -202775258 - L2 LINE L2 -1 3271 3211 2353 103 0 3 chr3 15262157 15262458 -202774700 + AluSx SINE Alu 1 300 -12 2178 109 0 3 chr3 15262750 15263033 -202774125 + AluSx SINE Alu 5 286 -26 277 70 70 0 chr3 15263188 15263231 -202773927 + MADE1 DNA Mariner 35 80 0 682 130 30 0 chr3 15263386 15263486 -202773672 - U6 snRNA snRNA -4 103 1 445 275 76 65 chr3 15263503 15263885 -202773273 - L1ME LINE L1 -439 5682 5297 1441 174 0 38 chr3 15263919 15264183 -202772975 + AluJb SINE Alu 28 281 -31 751 168 0 24 chr3 15264359 15264484 -202772674 - FLAM_C SINE Alu -20 123 2 983 115 7 14 chr3 15264807 15264955 -202772203 + AluSg/x SINE Alu 159 305 -7 22 0 0 0 chr3 15265136 15265158 -202772000 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr3 15266352 15266394 -202770764 + AT_rich Low_complexity Low_complexity 1 42 0 1736 155 3 13 chr3 15266692 15266995 -202770163 - AluSc SINE Alu -9 300 1 2513 56 0 0 chr3 15267041 15267343 -202769815 + AluY SINE Alu 1 302 -9 28 29 0 0 chr3 15267526 15267561 -202769597 + AT_rich Low_complexity Low_complexity 1 35 0 1773 130 40 10 chr3 15267614 15267913 -202769245 - AluSx SINE Alu -4 308 1 1226 181 3 84 chr3 15268436 15268756 -202768402 + AluJo SINE Alu 1 294 -18 469 245 29 103 chr3 15268823 15268903 -202768255 + MER5A DNA MER1_type 1 85 -104 2102 94 7 0 chr3 15268903 15269190 -202767968 + AluSx SINE Alu 7 295 -17 469 245 29 103 chr3 15269190 15269313 -202767845 + MER5A DNA MER1_type 85 189 0 2441 57 3 0 chr3 15269520 15269820 -202767338 - AluY SINE Alu -10 301 1 2137 99 3 3 chr3 15270131 15270423 -202766735 - AluSx SINE Alu -20 292 1 1292 111 0 115 chr3 15270594 15270644 -202766514 + L1PB1 LINE L1 5926 5980 -171 2132 113 0 0 chr3 15270644 15270944 -202766214 + AluSq SINE Alu 1 300 -13 1964 91 7 14 chr3 15270954 15271262 -202765896 + AluSx SINE Alu 1 306 0 1292 111 0 115 chr3 15271262 15271452 -202765706 + L1PB1 LINE L1 5990 6149 -2 1498 167 17 38 chr3 15271529 15271822 -202765336 - AluJo SINE Alu -25 287 1 231 337 87 0 chr3 15272087 15272179 -202764979 - MIR SINE MIR -64 144 45 481 233 0 0 chr3 15272731 15272817 -202764341 - L2 LINE L2 -33 3239 3154 953 78 39 0 chr3 15272975 15273103 -202764055 - AluSq/x SINE Alu -179 133 1 2426 60 0 3 chr3 15273114 15273416 -202763742 - AluY SINE Alu -10 301 1 196 315 11 22 chr3 15273417 15273506 -202763652 - L2 LINE L2 -236 3036 2949 335 332 175 15 chr3 15273612 15273880 -202763278 + L2 LINE L2 2924 3234 -38 373 217 26 11 chr3 15273946 15274102 -202763056 - MIR SINE MIR -37 225 3 183 280 192 48 chr3 15274112 15274237 -202762921 - MIR SINE MIR -1 261 119 610 261 112 11 chr3 15275067 15275255 -202761903 + MIR SINE MIR 38 244 -18 195 42 0 0 chr3 15275582 15275606 -202761552 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 298 237 130 46 chr3 15275649 15275780 -202761378 + L2 LINE L2 3160 3301 -12 1650 121 3 112 chr3 15275783 15276122 -202761036 + AluJo SINE Alu 1 302 -10 21 36 0 0 chr3 15276343 15276371 -202760787 + AT_rich Low_complexity Low_complexity 1 28 0 827 143 8 0 chr3 15276446 15276572 -202760586 - FLAM_C SINE Alu -16 127 1 320 113 0 0 chr3 15276783 15276836 -202760322 - Alu SINE Alu -1 301 249 471 114 0 0 chr3 15277118 15277188 -202759970 - L1MB7 LINE L1 -52 6132 6063 547 159 7 80 chr3 15277794 15277810 -202759348 - LTR37A LTR ERV1 -52 374 358 1771 149 45 0 chr3 15277810 15278099 -202759059 + AluSx SINE Alu 1 302 -10 547 159 7 80 chr3 15278099 15278220 -202758938 - LTR37A LTR ERV1 -68 358 247 631 154 19 0 chr3 15278222 15278326 -202758832 + FLAM_C SINE Alu 2 107 -36 434 88 0 0 chr3 15278363 15278420 -202758738 + FLAM_A SINE Alu 50 106 -36 452 152 10 0 chr3 15278427 15278526 -202758632 + (CA)n Simple_repeat Simple_repeat 2 101 0 851 186 162 25 chr3 15278526 15278730 -202758428 + AluJo SINE Alu 76 307 -5 206 362 43 0 chr3 15278988 15279082 -202758076 - MIR SINE MIR -116 146 49 287 226 49 78 chr3 15279109 15279211 -202757947 - L2 LINE L2 -1 3312 3214 254 235 235 0 chr3 15279195 15279293 -202757865 + L2 LINE L2 3192 3312 -1 * 2009 122 0 3 chr3 15279637 15279932 -202757226 + AluSx SINE Alu 1 294 -18 1418 211 65 0 chr3 15280039 15280380 -202756778 - L1MB4 LINE L1 0 6180 5818 1839 84 81 15 chr3 15280380 15280653 -202756505 - AluSg1 SINE Alu -18 291 1 2486 65 0 0 chr3 15280663 15280972 -202756186 - AluSc SINE Alu 0 309 1 1280 180 103 4 chr3 15281322 15281594 -202755564 - AluJo SINE Alu -13 299 1 330 284 149 14 chr3 15281694 15281842 -202755316 - MIR SINE MIR -73 189 22 1961 111 27 10 chr3 15282282 15282579 -202754579 - AluSx SINE Alu -10 302 1 1970 145 7 0 chr3 15282612 15282922 -202754236 - AluSx SINE Alu 0 312 1 1828 37 37 0 chr3 15283807 15284050 -202753108 - SVA Other Other -1117 269 18 8487 144 62 29 chr3 15284050 15285693 -202751465 - L1M1 LINE L1 -743 5403 3776 2163 99 0 10 chr3 15285693 15285996 -202751162 - AluSx SINE Alu -12 300 1 8487 144 62 29 chr3 15285996 15286125 -202751033 - L1M1 LINE L1 -2370 3776 3653 2118 117 0 0 chr3 15286485 15286785 -202750373 + AluSx SINE Alu 1 300 -12 181 283 75 57 chr3 15286882 15286988 -202750170 + MER5C DNA MER1_type 4 111 -213 1477 108 0 0 chr3 15288211 15288414 -202748744 - AluSg/x SINE Alu -20 292 90 482 301 44 22 chr3 15289193 15289376 -202747782 + MIR SINE MIR 75 261 -1 228 322 54 47 chr3 15289829 15289978 -202747180 + L2 LINE L2 2598 2747 -567 2062 120 0 10 chr3 15290055 15290355 -202746803 - AluSc SINE Alu -12 297 1 1795 109 75 31 chr3 15290426 15290561 -202746597 + AluSq SINE Alu 1 129 -184 2232 82 0 7 chr3 15290561 15290867 -202746291 + AluY SINE Alu 2 305 -6 1795 109 75 31 chr3 15290867 15291024 -202746134 + AluSq SINE Alu 129 306 -7 207 0 0 0 chr3 15291167 15291190 -202745968 + (T)n Simple_repeat Simple_repeat 1 23 0 2249 99 7 0 chr3 15291578 15291880 -202745278 + AluSq SINE Alu 1 304 -9 770 186 170 0 chr3 15292072 15292260 -202744898 + MER46B DNA MER2_type 1 95 -141 346 113 65 0 chr3 15292260 15292322 -202744836 + MER21B LTR ERV1 3 68 -863 899 141 7 0 chr3 15292322 15292464 -202744694 - AluJo SINE Alu -150 162 20 1038 137 71 18 chr3 15292472 15292713 -202744445 + MER21B LTR ERV1 214 487 -376 350 176 32 12 chr3 15292713 15292937 -202744221 + AluJo SINE Alu 1 294 -8 * 1646 178 75 42 chr3 15292931 15293291 -202743867 + MER21A LTR ERV1 560 931 0 927 133 21 0 chr3 15293291 15293434 -202743724 + MER46B DNA MER2_type 91 236 0 1549 132 115 65 chr3 15294043 15294273 -202742885 - THE1C LTR MaLR -1 374 118 2300 93 0 0 chr3 15294273 15294575 -202742583 + AluSg1 SINE Alu 1 302 -7 1549 132 115 65 chr3 15294575 15294700 -202742458 - THE1C LTR MaLR -257 118 1 780 135 23 23 chr3 15294967 15295100 -202742058 + FLAM_C SINE Alu 1 133 0 2010 119 20 3 chr3 15295168 15295471 -202741687 - AluSx SINE Alu -4 308 1 755 139 14 83 chr3 15295473 15295617 -202741541 - AluJo SINE Alu -177 135 2 222 219 0 16 chr3 15295618 15295682 -202741476 + T-rich Low_complexity Low_complexity 1 63 0 709 139 42 69 chr3 15295684 15295703 -202741455 - FLAM_C SINE Alu -171 141 123 2444 54 0 6 chr3 15295703 15296016 -202741142 - AluY SINE Alu 0 311 1 2110 112 7 0 chr3 15296019 15296314 -202740844 - AluSp SINE Alu -16 297 1 709 139 42 69 chr3 15296314 15296434 -202740724 - FLAM_C SINE Alu -191 121 2 438 251 131 0 chr3 15296447 15296638 -202740520 + L1ME LINE L1 5603 5818 -303 22 35 0 0 chr3 15296697 15296726 -202740432 + AT_rich Low_complexity Low_complexity 1 29 0 2218 91 0 3 chr3 15296767 15297063 -202740095 + AluSc SINE Alu 1 295 -14 2261 98 3 0 chr3 15297237 15297544 -202739614 + AluSp SINE Alu 1 308 -5 2091 126 0 7 chr3 15297609 15297919 -202739239 - AluSx SINE Alu -4 308 1 751 237 6 17 chr3 15297943 15298120 -202739038 + MER5B DNA MER1_type 4 178 0 449 226 182 17 chr3 15298291 15298348 -202738810 + MIR SINE MIR 2 48 -214 2335 171 88 11 chr3 15298348 15298792 -202738366 - MER66A LTR ERV1 0 478 1 449 226 182 17 chr3 15298792 15298915 -202738243 + MIR SINE MIR 48 212 -50 430 304 22 77 chr3 15299734 15300007 -202737151 - MIR SINE MIR 0 262 5 290 294 125 22 chr3 15300034 15300170 -202736988 + MIR SINE MIR 61 210 -52 760 215 101 0 chr3 15300259 15300417 -202736741 + MIR SINE MIR 86 259 -3 350 115 16 0 chr3 15300418 15300479 -202736679 + (TA)n Simple_repeat Simple_repeat 1 62 0 823 157 30 139 chr3 15300509 15300841 -202736317 - AluSx SINE Alu -6 296 1 1152 140 36 59 chr3 15300990 15301171 -202735987 - AluJo SINE Alu -9 303 126 2280 71 0 20 chr3 15301171 15301468 -202735690 + AluSg SINE Alu 1 291 -19 1152 140 36 59 chr3 15301468 15301508 -202735650 - AluJo SINE Alu -186 126 87 424 233 158 14 chr3 15301511 15301657 -202735501 + L2 LINE L2 3131 3297 -16 * 482 267 12 121 chr3 15301652 15301885 -202735273 + L2 LINE L2 3025 3215 -98 2291 85 3 0 chr3 15301885 15302190 -202734968 - AluSg SINE Alu -4 306 1 482 267 12 121 chr3 15302190 15302278 -202734880 + L2 LINE L2 3215 3311 -2 203 0 37 0 chr3 15303044 15303071 -202734087 + (TG)n Simple_repeat Simple_repeat 2 29 0 1558 81 5 5 chr3 15303122 15303332 -202733826 - AluSq SINE Alu -28 285 76 2467 46 7 3 chr3 15303333 15303640 -202733518 - AluY SINE Alu -3 308 1 599 114 0 0 chr3 15303644 15303723 -202733435 - AluSq SINE Alu -232 80 2 499 172 90 46 chr3 15304056 15304208 -202732950 + MIR SINE MIR 43 211 -51 2063 113 10 0 chr3 15304252 15304553 -202732605 - AluSx SINE Alu -6 306 3 2065 167 109 13 chr3 15304720 15305026 -202732132 - L1MB8 LINE L1 -9 6169 5805 2290 83 0 3 chr3 15305026 15305326 -202731832 - AluY SINE Alu -12 299 1 2065 167 109 13 chr3 15305326 15305467 -202731691 - L1MB8 LINE L1 -373 5805 5679 1289 195 33 0 chr3 15305467 15305708 -202731450 - AluJb SINE Alu -63 249 1 1310 146 77 16 chr3 15305709 15305810 -202731348 - L1MB8 LINE L1 -571 5607 5514 2244 106 3 0 chr3 15305810 15306121 -202731037 - AluSx SINE Alu 0 312 1 1310 146 77 16 chr3 15306121 15306265 -202730893 - L1MB8 LINE L1 -664 5514 5347 446 167 205 1 chr3 15306351 15306499 -202730659 + L2 LINE L2 2827 3000 -313 1586 214 112 47 chr3 15306503 15306541 -202730617 - MLT1D LTR MaLR -2 503 469 4351 149 75 92 chr3 15306541 15307630 -202729528 - MER11C LTR ERVK 0 1071 1 1586 214 112 47 chr3 15307630 15308063 -202729095 - MLT1D LTR MaLR -36 469 1 459 225 0 42 chr3 15308208 15308328 -202728830 + L2 LINE L2 3180 3294 -19 332 276 131 14 chr3 15308868 15309013 -202728145 + MIR SINE MIR 46 207 -55 542 200 0 0 chr3 15309228 15309318 -202727840 + AluJ/FLAM SINE Alu 2 91 -221 487 90 0 0 chr3 15309315 15309382 -202727776 - Alu SINE Alu -242 68 2 * 195 100 0 0 chr3 15309807 15309837 -202727321 + (GGAAA)n Simple_repeat Simple_repeat 2 31 0 650 245 11 5 chr3 15310342 15310530 -202726628 - AluSx SINE Alu -119 193 5 305 170 0 19 chr3 15310930 15310983 -202726175 - MER5B DNA MER1_type -122 56 5 2299 68 0 34 chr3 15311111 15311433 -202725725 + AluY SINE Alu 1 311 0 2238 88 13 0 chr3 15311483 15311788 -202725370 + AluY SINE Alu 1 309 -2 192 314 157 33 chr3 15312176 15312297 -202724861 - L2 LINE L2 -1 3271 3136 318 211 76 27 chr3 15313042 15313198 -202723960 + MLT1H LTR MaLR 20 223 -326 1592 184 11 0 chr3 15314871 15315181 -202721977 + AluJb SINE Alu 6 312 0 1932 185 54 76 chr3 15315182 15315446 -202721712 + L1MB4 LINE L1 4472 4740 -1406 2089 103 0 7 chr3 15315446 15315736 -202721422 - AluY SINE Alu -23 288 1 1932 185 54 76 chr3 15315736 15315860 -202721298 + L1MB4 LINE L1 4740 4865 -1281 2220 67 0 55 chr3 15315860 15316172 -202720986 - AluY SINE Alu -16 295 1 1932 185 54 76 chr3 15316172 15316432 -202720726 + L1MB4 LINE L1 4865 5131 -1015 2055 101 9 28 chr3 15317112 15317429 -202719729 + AluSx SINE Alu 1 311 -1 1994 184 44 58 chr3 15317870 15317913 -202719245 + L1MB4 LINE L1 5106 5148 -1032 1990 133 3 0 chr3 15317913 15318213 -202718945 + AluSc SINE Alu 1 301 -8 1994 184 44 58 chr3 15318213 15318394 -202718764 + L1MB4 LINE L1 5148 5330 -850 1423 229 0 3 chr3 15318394 15318699 -202718459 + AluJb SINE Alu 1 304 -8 1994 184 44 58 chr3 15318699 15318858 -202718300 + L1MB4 LINE L1 5330 5490 -690 928 171 0 6 chr3 15318858 15319016 -202718142 + FRAM SINE Alu 1 157 -9 1994 184 44 58 chr3 15319016 15319043 -202718115 + L1MB4 LINE L1 5490 5516 -664 2238 71 0 0 chr3 15319043 15319367 -202717791 - AluY SINE Alu 0 324 1 1994 184 44 58 chr3 15319367 15319692 -202717466 + L1MB4 LINE L1 5516 5794 -386 1980 113 0 0 chr3 15319692 15320004 -202717154 + AluSx SINE Alu 1 312 0 1994 184 44 58 chr3 15320004 15320082 -202717076 + L1MB4 LINE L1 5794 5872 -308 961 83 0 0 chr3 15320082 15320214 -202716944 + AluY SINE Alu 1 132 -179 1501 161 38 3 chr3 15320229 15320520 -202716638 + L1MB4 LINE L1 5859 6159 -21 315 329 12 0 chr3 15320534 15320616 -202716542 + L1MC4a LINE L1 5815 5897 -1911 24 0 0 0 chr3 15320802 15320826 -202716332 + AT_rich Low_complexity Low_complexity 1 24 0 1787 139 0 20 chr3 15320973 15321268 -202715890 - AluJb SINE Alu -1 311 23 227 191 85 0 chr3 15321469 15321516 -202715642 + L2 LINE L2 3221 3271 -1 1105 133 0 6 chr3 15321630 15321803 -202715355 + AluSg/x SINE Alu 117 288 -24 2020 104 7 10 chr3 15322580 15322888 -202714270 + AluSx SINE Alu 1 307 -5 24 0 0 0 chr3 15323336 15323360 -202713798 + AT_rich Low_complexity Low_complexity 1 24 0 257 311 0 0 chr3 15323719 15323780 -202713378 - L2 LINE L2 -1 3271 3211 238 234 104 13 chr3 15324035 15324189 -202712969 + AluY SINE Alu 14 132 -169 1996 136 0 7 chr3 15325567 15325869 -202711289 - AluSx SINE Alu -12 300 1 2092 97 0 10 chr3 15326265 15326565 -202710593 - AluSx SINE Alu -14 298 2 834 128 15 0 chr3 15327040 15327173 -202709985 + AluSg/x SINE Alu 172 306 -6 499 172 90 46 chr3 15327206 15327358 -202709800 - MIR SINE MIR -51 211 43 2282 94 0 0 chr3 15327690 15327988 -202709170 + AluSq SINE Alu 1 298 -15 1302 160 86 26 chr3 15328129 15328397 -202708761 + AluJo SINE Alu 1 284 -28 1595 180 20 7 chr3 15328609 15328904 -202708254 + AluJo SINE Alu 6 304 -8 1883 129 7 3 chr3 15328907 15329210 -202707948 + AluSx SINE Alu 1 304 -8 1946 213 101 17 chr3 15329218 15329735 -202707423 + L1ME1 LINE L1 5480 6039 -127 635 76 0 0 chr3 15329748 15329827 -202707331 - AluSg/x SINE Alu -14 295 217 1416 154 0 51 chr3 15329999 15330311 -202706847 - AluY SINE Alu -1 300 5 28 0 0 0 chr3 15331922 15331950 -202705208 + AT_rich Low_complexity Low_complexity 1 28 0 1961 105 7 7 chr3 15332000 15332295 -202704863 + AluSc SINE Alu 1 295 -14 2317 70 3 3 chr3 15332835 15333134 -202704024 + AluY SINE Alu 1 299 -12 296 234 168 0 chr3 15333274 15333381 -202703777 - MIR SINE MIR -68 140 16 358 58 115 0 chr3 15333519 15333571 -202703587 + L1ME3 LINE L1 6093 6150 -12 2428 70 0 3 chr3 15333576 15333888 -202703270 - AluY SINE Alu 0 311 1 449 62 10 82 chr3 15334064 15334102 -202703056 - L1MB3 LINE L1 0 6183 6144 1673 123 0 12 chr3 15334102 15334355 -202702803 - AluSx SINE Alu -14 298 49 449 62 10 82 chr3 15334355 15334413 -202702745 - L1MB3 LINE L1 -39 6144 6094 790 43 0 52 chr3 15334439 15334555 -202702603 + L1PA6 LINE L1 6045 6154 0 924 153 12 116 chr3 15334575 15334816 -202702342 + AluJo SINE Alu 86 301 -11 1370 153 17 83 chr3 15334827 15335127 -202702031 - AluJo SINE Alu -30 282 3 327 377 84 0 chr3 15335393 15335560 -202701598 + L2 LINE L2 2568 2748 -566 1839 112 0 4 chr3 15335584 15335852 -202701306 + AluSc SINE Alu 18 284 -25 1816 109 10 55 chr3 15335885 15336196 -202700962 + AluSx SINE Alu 1 297 -15 258 330 21 0 chr3 15336426 15336523 -202700635 + L2 LINE L2 3085 3183 -89 2282 50 0 0 chr3 15336670 15336974 -202700184 + AluSg SINE Alu 1 304 0 206 263 53 0 chr3 15336979 15337055 -202700103 + MIR SINE MIR 64 143 -119 1932 121 0 7 chr3 15337746 15338044 -202699114 - AluJb SINE Alu -14 298 3 546 115 73 10 chr3 15338072 15338168 -202698990 - U13 snRNA snRNA 0 104 3 357 325 69 65 chr3 15338317 15338475 -202698683 - L2 LINE L2 -1 3312 3151 2238 92 3 0 chr3 15338475 15338770 -202698388 + AluSg SINE Alu 1 296 -14 357 325 69 65 chr3 15338770 15338857 -202698301 - L2 LINE L2 -162 3151 3066 1913 132 7 0 chr3 15338952 15339240 -202697918 - AluSx SINE Alu -22 290 1 195 279 0 0 chr3 15339273 15339316 -202697842 - MIR SINE MIR -27 235 193 1865 136 4 0 chr3 15339389 15339668 -202697490 + AluJb SINE Alu 19 298 -14 2054 112 7 3 chr3 15339944 15340248 -202696910 + AluSx SINE Alu 1 305 -7 1915 135 13 7 chr3 15340484 15340788 -202696370 + AluJb SINE Alu 1 306 -6 2120 94 0 13 chr3 15340906 15341205 -202695953 + AluY SINE Alu 1 295 -16 635 76 0 0 chr3 15341382 15341461 -202695697 + Alu SINE Alu 220 298 -14 2179 189 85 62 chr3 15341474 15342000 -202695158 - L1ME1 LINE L1 -127 6039 5496 2335 70 7 0 chr3 15342000 15342301 -202694857 - AluY SINE Alu -8 303 1 2179 189 85 62 chr3 15342301 15342387 -202694771 - L1ME1 LINE L1 -670 5496 5413 6193 133 291 14 chr3 15342387 15343715 -202693443 + pTR5 LTR ERV1 743 2438 0 358 148 0 0 chr3 15343716 15343770 -202693388 - L1ME1 LINE L1 -748 5418 5365 988 196 56 82 chr3 15343787 15343997 -202693161 + AluJb SINE Alu 1 215 -97 1567 101 0 0 chr3 15343997 15344206 -202692952 + AluSq SINE Alu 1 209 -104 3440 109 77 38 chr3 15344206 15344764 -202692394 - LTR19B LTR ERV1 0 580 1 988 196 56 82 chr3 15344764 15344858 -202692300 + AluJb SINE Alu 213 298 -14 851 190 25 25 chr3 15344858 15345058 -202692100 - L1MA9 LINE L1 -178 6134 5935 2109 92 7 0 chr3 15345074 15345356 -202691802 - AluSq SINE Alu -28 285 2 1892 142 55 2 chr3 15345357 15345809 -202691349 - L1MA9 LINE L1 -532 5780 5193 539 194 0 0 chr3 15345830 15345928 -202691230 - U13 snRNA snRNA -2 102 5 324 183 92 8 chr3 15345942 15345959 -202691199 - L1ME1 LINE L1 -791 5375 5361 1897 129 54 0 chr3 15345959 15346253 -202690905 - AluSx SINE Alu -2 310 1 324 183 92 8 chr3 15346253 15346375 -202690783 - L1ME1 LINE L1 -805 5361 5226 239 269 104 0 chr3 15346623 15346690 -202690468 + L2 LINE L2 3149 3222 -50 1426 191 7 7 chr3 15346807 15347090 -202690068 - AluJo SINE Alu -24 288 6 22 0 0 0 chr3 15347095 15347117 -202690041 + AT_rich Low_complexity Low_complexity 1 22 0 405 307 129 6 chr3 15347373 15347536 -202689622 + MIR3 SINE MIR 26 208 0 533 87 0 33 chr3 15347588 15347680 -202689478 - FLAM_C SINE Alu 0 143 55 969 115 0 0 chr3 15347709 15347839 -202689319 + FLAM_C SINE Alu 2 131 -2 1497 136 0 0 chr3 15347872 15348100 -202689058 + AluSg/x SINE Alu 85 312 0 1821 143 0 31 chr3 15348180 15348500 -202688658 - AluSx SINE Alu 0 311 1 708 172 52 0 chr3 15348697 15348831 -202688327 - FLAM_C SINE Alu -1 142 2 1775 149 3 7 chr3 15348843 15349131 -202688027 - AluJo SINE Alu -25 287 1 1122 111 81 77 chr3 15349159 15349394 -202687764 - MER46A DNA MER2_type 0 236 1 892 29 0 0 chr3 15349534 15349639 -202687519 - AluSc SINE Alu -204 105 1 1165 150 13 44 chr3 15349879 15350106 -202687052 - AluJo SINE Alu -18 294 75 29 0 0 0 chr3 15350126 15350155 -202687003 + AT_rich Low_complexity Low_complexity 1 29 0 2002 99 0 4 chr3 15350191 15350464 -202686694 + AluSc SINE Alu 2 273 -36 750 44 0 0 chr3 15350464 15350555 -202686603 + AluY SINE Alu 210 300 -11 564 257 29 14 chr3 15350567 15350707 -202686451 + MIR SINE MIR 46 187 -75 216 176 149 54 chr3 15350748 15350822 -202686336 - MIR SINE MIR -64 144 64 1435 110 55 0 chr3 15350904 15351122 -202686036 + MER30 DNA MER1_type 1 230 0 2239 80 0 10 chr3 15351223 15351523 -202685635 - AluY SINE Alu -14 297 1 1126 194 21 14 chr3 15351691 15351970 -202685188 - AluJb SINE Alu -21 291 11 921 109 132 23 chr3 15352496 15352653 -202684505 - AluSq SINE Alu -1 312 133 2217 81 0 13 chr3 15352653 15352962 -202684196 - AluY SINE Alu -6 305 1 921 109 132 23 chr3 15352962 15352978 -202684180 - AluSq SINE Alu -180 133 120 1583 156 17 31 chr3 15353123 15353411 -202683747 + AluJo SINE Alu 17 300 -12 2750 3 0 0 chr3 15353608 15353912 -202683246 - AluYa5 SINE Alu -7 304 1 1716 131 38 14 chr3 15353981 15354271 -202682887 - AluSx SINE Alu -15 297 1 931 84 0 0 chr3 15354452 15354571 -202682587 - AluY SINE Alu -192 119 1 533 87 0 33 chr3 15354599 15354691 -202682467 + FLAM_A SINE Alu 54 142 0 24 0 0 0 chr3 15354771 15354795 -202682363 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 15355162 15355183 -202681975 + AT_rich Low_complexity Low_complexity 1 21 0 312 170 0 0 chr3 15355607 15355660 -202681498 + Alu SINE Alu 243 295 -7 2052 123 0 23 chr3 15355660 15355969 -202681189 + AluSx SINE Alu 1 302 -10 25 0 0 0 chr3 15356015 15356040 -202681118 + AT_rich Low_complexity Low_complexity 1 25 0 254 0 0 77 chr3 15356307 15356346 -202680812 + (C)n Simple_repeat Simple_repeat 1 36 0 29 28 0 0 chr3 15357081 15357117 -202680041 + AT_rich Low_complexity Low_complexity 1 36 0 184 148 0 0 chr3 15357465 15357492 -202679666 + MIR3 SINE MIR 155 181 -27 898 142 58 0 chr3 15357528 15357683 -202679475 + AluSg/x SINE Alu 137 300 -12 1792 144 0 63 chr3 15357894 15358227 -202678931 + AluJb SINE Alu 1 312 0 746 132 0 0 chr3 15358382 15358488 -202678670 - AluSq/x SINE Alu -206 107 2 1851 126 7 0 chr3 15358522 15358807 -202678351 - AluSx SINE Alu -25 287 1 852 158 0 0 chr3 15358826 15358984 -202678174 + AluSg/x SINE Alu 130 287 -25 493 283 107 0 chr3 15359913 15360072 -202677086 - AluSp SINE Alu -17 296 121 26 30 0 0 chr3 15360237 15360270 -202676888 + AT_rich Low_complexity Low_complexity 1 33 0 22 56 0 0 chr3 15360778 15360814 -202676344 + AT_rich Low_complexity Low_complexity 1 36 0 27 0 0 0 chr3 15360814 15360841 -202676317 + GC_rich Low_complexity Low_complexity 1 27 0 5077 76 4 20 chr3 15361112 15361812 -202675346 - L1PA6 LINE L1 -11 6143 5455 1088 82 7 0 chr3 15362247 15362393 -202674765 + AluY SINE Alu 158 304 -7 920 77 0 0 chr3 15362394 15362511 -202674647 - AluSg SINE Alu -193 117 1 925 273 29 25 chr3 15362560 15362802 -202674356 - MIR SINE MIR -4 258 16 22 0 0 0 chr3 15363372 15363394 -202673764 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 15363709 15363737 -202673421 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr3 15363942 15363966 -202673192 + GC_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr3 15364200 15364220 -202672938 + (T)n Simple_repeat Simple_repeat 1 20 0 1631 84 5 0 chr3 15364510 15364725 -202672433 - AluSp SINE Alu -97 216 1 2246 88 0 3 chr3 15364899 15365195 -202671963 - AluSc SINE Alu -14 295 1 615 203 181 0 chr3 15365211 15365349 -202671809 + FRAM SINE Alu 1 158 -18 1883 153 0 0 chr3 15365376 15365670 -202671488 + AluSx SINE Alu 1 294 -18 405 250 56 0 chr3 15366641 15366749 -202670409 + L2 LINE L2 3191 3304 -9 204 40 0 0 chr3 15366868 15366893 -202670265 + (A)n Simple_repeat Simple_repeat 1 25 0 718 225 23 6 chr3 15367077 15367250 -202669908 + MER5B DNA MER1_type 1 176 -2 2493 82 0 0 chr3 15368331 15368634 -202668524 + AluSx SINE Alu 1 303 -9 2282 127 0 3 chr3 15369161 15369469 -202667689 + AluSx SINE Alu 1 307 -5 2416 68 3 19 chr3 15369592 15369902 -202667256 + AluSp SINE Alu 1 305 -8 382 313 27 34 chr3 15370185 15370332 -202666826 - MIR SINE MIR -19 243 98 2222 108 7 7 chr3 15370374 15370680 -202666478 - AluSq SINE Alu -7 306 1 2319 110 0 3 chr3 15370690 15370990 -202666168 - AluSx SINE Alu -13 299 1 337 302 102 50 chr3 15371071 15371107 -202666051 - L2 LINE L2 -567 2747 2714 2322 75 0 56 chr3 15371107 15371428 -202665730 - AluSx SINE Alu -9 303 1 337 302 102 50 chr3 15371428 15371775 -202665383 - L2 LINE L2 -600 2714 2344 411 247 131 73 chr3 15372304 15372563 -202664595 + MLT1K LTR MaLR 153 426 -162 198 143 0 0 chr3 15372726 15372761 -202664397 + (TG)n Simple_repeat Simple_repeat 2 36 0 362 56 0 19 chr3 15372887 15372941 -202664217 + (CA)n Simple_repeat Simple_repeat 1 53 0 2547 68 3 0 chr3 15373021 15373329 -202663829 - AluY SINE Alu -2 309 1 311 333 0 60 chr3 15373363 15373513 -202663645 - MIR3 SINE MIR -67 141 1 247 326 45 11 chr3 15373563 15373652 -202663506 + L2 LINE L2 2957 3048 -224 1411 234 55 18 chr3 15373683 15374081 -202663077 + MLT1J LTR MaLR 99 511 0 543 311 83 19 chr3 15374150 15374207 -202662951 + L2 LINE L2 2693 2745 -569 2329 118 7 0 chr3 15374207 15374512 -202662646 + AluSx SINE Alu 1 307 -5 543 311 83 19 chr3 15374512 15374718 -202662440 + L2 LINE L2 2745 2973 -341 285 261 194 45 chr3 15375021 15375155 -202662003 + MIR3 SINE MIR 30 183 -25 184 148 0 0 chr3 15375330 15375357 -202661801 + MIR3 SINE MIR 155 181 -27 970 142 58 0 chr3 15375393 15375548 -202661610 + AluSg/x SINE Alu 135 298 -12 295 335 26 79 chr3 15376628 15376693 -202660465 + MIR SINE MIR 103 170 -92 1954 117 13 46 chr3 15376693 15377000 -202660158 + AluSx SINE Alu 1 297 -15 295 335 26 79 chr3 15377000 15377086 -202660072 + MIR SINE MIR 170 246 -16 24 85 0 0 chr3 15377366 15377425 -202659733 + AT_rich Low_complexity Low_complexity 1 59 0 2112 134 0 6 chr3 15377502 15377815 -202659343 + AluSx SINE Alu 1 311 -1 1566 207 4 0 chr3 15377816 15378072 -202659086 - AluJb SINE Alu -55 257 1 2513 57 0 3 chr3 15378708 15379007 -202658151 - AluY SINE Alu -13 298 1 808 155 0 16 chr3 15379009 15379138 -202658020 - AluJo/FLAM SINE Alu -180 132 6 2246 113 13 10 chr3 15379188 15379499 -202657659 + AluSx SINE Alu 1 312 0 998 176 11 17 chr3 15379509 15379685 -202657473 - AluJ SINE Alu -18 294 120 2366 105 0 0 chr3 15379795 15380099 -202657059 + AluSx SINE Alu 1 304 -8 1331 165 0 5 chr3 15380669 15380893 -202656265 - AluY SINE Alu -88 223 1 804 158 0 0 chr3 15380904 15381024 -202656134 - AluJ SINE Alu -187 125 6 2261 109 13 10 chr3 15381074 15381385 -202655773 + AluSx SINE Alu 1 312 0 994 167 29 17 chr3 15381395 15381569 -202655589 - AluJb SINE Alu -18 294 119 2275 122 0 0 chr3 15381676 15381987 -202655171 + AluSx SINE Alu 1 311 -1 1566 207 4 0 chr3 15381988 15382244 -202654914 - AluJb SINE Alu -55 257 1 2525 53 0 3 chr3 15382882 15383181 -202653977 - AluY SINE Alu -13 298 1 759 179 8 0 chr3 15383213 15383336 -202653822 + FLAM_C SINE Alu 3 126 -17 2044 148 0 3 chr3 15383433 15383731 -202653427 + AluSx SINE Alu 1 297 -15 22 35 0 0 chr3 15383853 15383882 -202653276 + AT_rich Low_complexity Low_complexity 1 29 0 1036 191 23 56 chr3 15383915 15383970 -202653188 + AluJo SINE Alu 84 139 -173 2112 131 3 13 chr3 15383970 15384284 -202652874 + AluSx SINE Alu 1 311 -1 1036 191 23 56 chr3 15384284 15384443 -202652715 + AluJo SINE Alu 139 291 -21 320 256 26 83 chr3 15384452 15384539 -202652619 - MIR SINE MIR -2 260 184 875 165 0 88 chr3 15384539 15384721 -202652437 + FRAM SINE Alu 1 166 0 320 256 26 83 chr3 15384721 15384789 -202652369 - MIR SINE MIR -78 184 114 645 145 40 24 chr3 15384899 15385023 -202652135 - AluY SINE Alu -4 307 182 1944 127 0 17 chr3 15385075 15385367 -202651791 - AluSx SINE Alu -25 287 1 1299 163 10 63 chr3 15385543 15385844 -202651314 + AluSq SINE Alu 1 285 -28 687 260 22 22 chr3 15386238 15386419 -202650739 - AluJo SINE Alu -130 182 2 504 243 138 0 chr3 15386447 15386599 -202650559 + MER96 DNA MER1_type 1 173 -2 412 282 0 10 chr3 15386604 15386707 -202650451 - L2 LINE L2 -32 3281 3180 2317 110 10 0 chr3 15387363 15387672 -202649486 + AluSx SINE Alu 1 312 0 23 33 0 0 chr3 15387791 15387821 -202649337 + AT_rich Low_complexity Low_complexity 1 30 0 1705 154 70 0 chr3 15387999 15388271 -202648887 - AluJo SINE Alu -21 291 1 302 309 75 0 chr3 15388362 15388456 -202648702 - L1MC/D LINE L1 -1986 5822 5722 2127 138 0 7 chr3 15388463 15388761 -202648397 - AluSx SINE Alu -16 296 1 775 237 6 17 chr3 15388785 15388962 -202648196 + MER5B DNA MER1_type 4 178 0 447 226 182 17 chr3 15389133 15389190 -202647968 + MIR SINE MIR 2 48 -214 2384 171 88 11 chr3 15389190 15389634 -202647524 - MER66A LTR ERV1 0 478 1 447 226 182 17 chr3 15389634 15389757 -202647401 + MIR SINE MIR 48 212 -50 428 303 22 80 chr3 15390574 15390848 -202646310 - MIR SINE MIR 0 262 5 1750 164 0 20 chr3 15391238 15391530 -202645628 + AluSx SINE Alu 1 286 -26 1700 153 0 28 chr3 15392448 15392730 -202644428 + AluSx SINE Alu 38 311 -1 316 233 185 38 chr3 15392802 15393094 -202644064 + Tigger8 DNA MER2_type 187 521 -145 198 118 0 0 chr3 15393362 15393396 -202643762 + (A)n Simple_repeat Simple_repeat 1 34 0 993 157 0 0 chr3 15393516 15393669 -202643489 - AluSg/x SINE Alu -31 281 129 680 260 94 69 chr3 15394169 15394603 -202642555 + HAL1 LINE L1 34 478 -2029 306 170 0 0 chr3 15394621 15394668 -202642490 + AluJ/FRAM SINE Alu 221 267 -35 2456 88 0 3 chr3 15394671 15394977 -202642181 - AluY SINE Alu -6 305 1 895 154 7 7 chr3 15394978 15395121 -202642037 - AluJo SINE Alu -169 143 1 294 323 58 53 chr3 15395551 15395740 -202641418 - MIR SINE MIR -52 210 21 217 289 175 57 chr3 15396053 15396247 -202640911 - L2 LINE L2 -163 3109 2893 261 286 114 28 chr3 15396303 15396558 -202640600 - L2 LINE L2 -457 2857 2581 219 36 0 0 chr3 15396827 15396855 -202640303 + (CCCCCT)n Simple_repeat Simple_repeat 4 31 0 680 220 23 8 chr3 15396865 15396997 -202640161 - AluJb SINE Alu -45 267 134 1553 255 106 38 chr3 15397369 15398134 -202639024 + HAL1 LINE L1 1595 2411 -96 2371 104 3 0 chr3 15398161 15398469 -202638689 + AluSg SINE Alu 1 309 -1 524 292 65 34 chr3 15398553 15398935 -202638223 + MLT1J LTR MaLR 73 504 -7 283 228 22 22 chr3 15400025 15400117 -202637041 - MIR3 SINE MIR -27 181 90 799 160 8 0 chr3 15400535 15400660 -202636498 + AluJo/FLAM SINE Alu 3 128 -184 1918 161 0 7 chr3 15400661 15400959 -202636199 + AluJb SINE Alu 5 300 -12 2137 125 6 3 chr3 15401059 15401370 -202635788 + AluSq SINE Alu 1 312 -1 1233 123 0 0 chr3 15401370 15401552 -202635606 + AluSg/x SINE Alu 120 301 0 2242 54 58 0 chr3 15401685 15401963 -202635195 + AluY SINE Alu 1 294 -17 1192 164 0 25 chr3 15401963 15401994 -202635164 + AluJo SINE Alu 106 136 -176 2324 82 0 0 chr3 15401994 15402303 -202634855 + AluY SINE Alu 1 309 0 1192 164 0 25 chr3 15402303 15402471 -202634687 + AluJo SINE Alu 136 301 -11 216 0 0 0 chr3 15402681 15402705 -202634453 + (A)n Simple_repeat Simple_repeat 1 24 0 2413 97 0 3 chr3 15402852 15403163 -202633995 - AluSx SINE Alu -2 310 1 2557 56 3 0 chr3 15403169 15403475 -202633683 - AluY SINE Alu -4 307 1 1044 78 8 0 chr3 15403475 15403604 -202633554 - AluSq/x SINE Alu -183 130 1 246 214 0 0 chr3 15404520 15404576 -202632582 + L1M3 LINE L1 5386 5441 -739 2264 113 0 7 chr3 15404576 15404876 -202632282 + AluSx SINE Alu 1 298 -14 2548 77 0 3 chr3 15405090 15405402 -202631756 + AluY SINE Alu 1 311 0 340 58 115 0 chr3 15405406 15405458 -202631700 - L1ME3 LINE L1 -12 6150 6093 262 232 229 3 chr3 15405596 15405771 -202631387 + MIR SINE MIR 16 237 -25 2239 120 0 0 chr3 15405840 15406140 -202631018 - AluSx SINE Alu -12 300 1 433 181 81 128 chr3 15406508 15406657 -202630501 - MER103 DNA DNA -1 165 24 274 219 78 0 chr3 15406754 15406818 -202630340 + L2 LINE L2 3153 3221 -51 223 316 10 41 chr3 15406882 15406980 -202630178 + (TGGA)n Simple_repeat Simple_repeat 1 95 0 679 261 101 20 chr3 15407049 15407248 -202629910 - MER58C DNA MER1_type 0 215 1 2160 126 10 0 chr3 15408008 15408309 -202628849 + AluSx SINE Alu 1 304 -8 301 257 202 0 chr3 15408355 15408464 -202628694 + HAL1 LINE L1 1184 1314 -1193 489 255 105 79 chr3 15408470 15408851 -202628307 + HAL1 LINE L1 8 398 -2109 1751 235 141 51 chr3 15408854 15409785 -202627373 + HAL1 LINE L1 444 1290 -1217 2334 117 0 0 chr3 15409785 15410093 -202627065 + AluSg SINE Alu 1 308 -2 1751 235 141 51 chr3 15410093 15410149 -202627009 + HAL1 LINE L1 1290 1340 -1167 2280 114 3 7 chr3 15410149 15410456 -202626702 + AluSx SINE Alu 1 306 -6 1751 235 141 51 chr3 15410456 15410512 -202626646 + HAL1 LINE L1 1340 1582 -925 2399 97 0 0 chr3 15414852 15415150 -202622008 + AluSg SINE Alu 1 298 -12 354 279 215 23 chr3 15415497 15415716 -202621442 - MIR SINE MIR 0 262 2 223 226 161 0 chr3 15415870 15415932 -202621226 + L2 LINE L2 3242 3313 0 265 30 0 0 chr3 15415959 15415992 -202621166 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 1942 134 11 3 chr3 15415992 15416275 -202620883 - AluSx SINE Alu -27 285 1 2109 104 42 0 chr3 15416464 15416751 -202620407 + AluSx SINE Alu 3 301 -11 261 240 83 0 chr3 15417212 15417308 -202619850 + L1ME LINE L1 5761 5864 -257 22 35 0 0 chr3 15417749 15417778 -202619380 + AT_rich Low_complexity Low_complexity 1 29 0 842 123 7 51 chr3 15418128 15418266 -202618892 - FLAM_C SINE Alu -1 132 1 1772 133 31 14 chr3 15418702 15418988 -202618170 - AluJb SINE Alu -21 291 1 1006 85 0 0 chr3 15418991 15419120 -202618038 - AluSq/x SINE Alu -170 142 14 1375 179 6 101 chr3 15419138 15419456 -202617702 + AluSx SINE Alu 2 289 -13 1024 167 25 0 chr3 15419472 15419634 -202617524 + FRAM SINE Alu 1 166 0 1889 125 0 59 chr3 15419711 15420032 -202617126 + AluSx SINE Alu 1 302 -10 1945 116 34 7 chr3 15420137 15420430 -202616728 + AluSx SINE Alu 1 301 -11 1770 159 28 0 chr3 15422031 15422314 -202614844 - AluJo SINE Alu -21 291 1 1291 253 54 42 chr3 15422327 15422825 -202614333 + MLT1H1 LTR MaLR 10 513 -42 529 217 17 0 chr3 15422882 15422997 -202614161 + L2 LINE L2 3193 3309 -4 416 259 40 46 chr3 15423007 15423181 -202613977 - MER5A DNA MER1_type -1 188 16 334 196 11 43 chr3 15423622 15423714 -202613444 + L1MC5 LINE L1 7837 7925 -36 234 257 117 53 chr3 15424141 15424312 -202612846 + L1MC5 LINE L1 7451 7632 -329 1793 144 38 3 chr3 15424520 15424811 -202612347 + AluSx SINE Alu 1 301 -11 189 241 86 0 chr3 15424853 15424911 -202612247 - MIR SINE MIR -11 251 189 279 203 51 0 chr3 15424947 15425006 -202612152 + HAL1 LINE L1 8 69 -2438 537 239 167 0 chr3 15425011 15425149 -202612009 + MER58A DNA MER1_type 41 201 -23 429 304 72 29 chr3 15425185 15425323 -202611835 - MIR SINE MIR -118 144 1 729 266 92 71 chr3 15425533 15425969 -202611189 + HAL1 LINE L1 34 478 -2029 287 200 20 0 chr3 15425984 15426034 -202611124 + AluJ/FRAM SINE Alu 217 267 -35 1984 148 0 0 chr3 15426037 15426340 -202610818 - AluSx SINE Alu -9 303 1 429 385 50 5 chr3 15426419 15426640 -202610518 + MIR SINE MIR 18 248 -14 362 318 59 6 chr3 15426940 15427110 -202610048 - L1M4 LINE L1 -1913 4233 4055 557 115 0 0 chr3 15427192 15427270 -202609888 - U6 snRNA snRNA -29 78 1 371 264 28 9 chr3 15427798 15427904 -202609254 - MIR SINE MIR -135 127 20 189 307 233 6 chr3 15427900 15428213 -202608945 + L2 LINE L2 1990 2373 -941 * 243 343 75 39 chr3 15428332 15428586 -202608572 + L2 LINE L2 2969 3231 -41 312 70 0 0 chr3 15428687 15428730 -202608428 + (TG)n Simple_repeat Simple_repeat 2 44 0 776 188 0 22 chr3 15428797 15428935 -202608223 + AluJo SINE Alu 2 136 -176 25 83 0 0 chr3 15429007 15429067 -202608091 + AT_rich Low_complexity Low_complexity 1 60 0 2136 113 0 23 chr3 15429067 15429377 -202607781 - AluSx SINE Alu -9 303 1 1873 147 10 0 chr3 15429377 15429669 -202607489 - AluJb SINE Alu -17 295 1 757 164 16 23 chr3 15429687 15429815 -202607343 - FLAM_C SINE Alu -14 129 3 23 0 0 0 chr3 15429918 15429941 -202607217 + AT_rich Low_complexity Low_complexity 1 23 0 1381 165 36 56 chr3 15429951 15430254 -202606904 + AluJo SINE Alu 1 297 -15 2177 122 0 0 chr3 15430254 15430565 -202606593 + AluSx SINE Alu 1 312 0 1155 229 4 8 chr3 15430664 15430908 -202606250 + MIR SINE MIR 20 262 0 540 266 24 16 chr3 15431396 15431414 -202605744 + MIR SINE MIR 17 33 -215 2514 30 0 13 chr3 15431414 15431718 -202605440 + AluY SINE Alu 1 300 -11 540 266 24 16 chr3 15431718 15431870 -202605288 + MIR SINE MIR 33 187 -61 208 243 122 27 chr3 15431911 15431985 -202605173 - MIR SINE MIR -64 144 64 418 70 18 0 chr3 15432067 15432124 -202605034 + MER30B DNA MER1_type 1 58 -132 258 189 21 32 chr3 15432252 15432347 -202604811 + (CACAA)n Simple_repeat Simple_repeat 1 94 0 423 127 63 35 chr3 15432355 15432870 -202604288 + (CA)n Simple_repeat Simple_repeat 1 529 0 300 365 79 20 chr3 15433299 15433502 -202603656 + MIR SINE MIR 27 241 -21 2029 136 0 13 chr3 15433715 15434031 -202603127 - AluSx SINE Alu 0 312 1 3827 169 31 12 chr3 15434057 15434775 -202602383 - L1MB3 LINE L1 0 6183 5453 365 245 37 43 chr3 15435533 15435667 -202601491 + L1MC4 LINE L1 2001 6983 -1339 270 226 0 0 chr3 15435925 15435978 -202601180 - MIR3 SINE MIR -40 168 116 264 345 12 0 chr3 15436578 15436662 -202600496 - L2 LINE L2 0 3272 3188 325 331 55 0 chr3 15436695 15436840 -202600318 - L2 LINE L2 -220 3052 2900 274 233 87 10 chr3 15437016 15437119 -202600039 + L1ME LINE L1 5756 5866 -296 562 128 0 0 chr3 15437142 15437220 -202599938 + AluS SINE Alu 1 78 -234 441 150 12 12 chr3 15437224 15437304 -202599854 + MER116 DNA Mariner 1 80 0 2008 234 51 18 chr3 15437327 15437874 -202599284 + L1MD2 LINE L1 5786 6350 -9 293 225 28 0 chr3 15438997 15439068 -202598090 + MIR3 SINE MIR 86 158 -50 747 233 11 28 chr3 15439072 15439252 -202597906 + MER5B DNA MER1_type 1 177 -1 298 149 0 0 chr3 15439833 15439880 -202597278 + MIR SINE MIR 86 132 -76 383 313 45 0 chr3 15440865 15440999 -202596159 + MIR3 SINE MIR 62 201 -7 453 300 87 43 chr3 15441063 15441293 -202595865 + MIR SINE MIR 16 255 -7 220 281 16 16 chr3 15441351 15441415 -202595743 + L2 LINE L2 3209 3272 0 279 0 0 0 chr3 15441465 15441496 -202595662 + (TC)n Simple_repeat Simple_repeat 1 31 0 711 238 119 18 chr3 15441900 15442127 -202595031 + MER112 DNA MER1_type 11 260 0 268 286 143 0 chr3 15442149 15442247 -202594911 - MIR SINE MIR -62 146 35 339 25 0 0 chr3 15442272 15442312 -202594846 + (CA)n Simple_repeat Simple_repeat 1 40 0 352 263 70 7 chr3 15442458 15442611 -202594547 + MIR3 SINE MIR 24 192 -16 201 289 333 0 chr3 15442779 15442869 -202594289 + MIR3 SINE MIR 37 156 -52 21 0 0 0 chr3 15443727 15443748 -202593410 + AT_rich Low_complexity Low_complexity 1 21 0 198 358 60 7 chr3 15443941 15444092 -202593066 - L2 LINE L2 -215 3057 2899 256 269 45 0 chr3 15444192 15444259 -202592899 - MIR SINE MIR -79 183 114 222 248 101 28 chr3 15444633 15444742 -202592416 + L2 LINE L2 3133 3249 -23 333 386 29 6 chr3 15445018 15445189 -202591969 + L3 LINE CR1 1387 1561 -16 270 296 98 15 chr3 15445542 15445674 -202591484 - L3 LINE CR1 -99 1478 1336 1838 194 87 27 chr3 15446076 15446514 -202590644 - MLT1C LTR MaLR 0 467 4 403 277 115 0 chr3 15447258 15447388 -202589770 + MER117 DNA MER1_type 39 183 -14 207 261 31 0 chr3 15447794 15447859 -202589299 + MIR SINE MIR 62 128 -80 1963 153 0 6 chr3 15448619 15448933 -202588225 - AluJo SINE Alu 0 312 1 429 161 74 0 chr3 15448956 15449037 -202588121 + MIR SINE MIR 57 143 -65 188 274 295 0 chr3 15449211 15449306 -202587852 - L2 LINE L2 0 3272 3150 323 325 20 5 chr3 15450066 15450263 -202586895 - L2 LINE L2 -1222 2092 1893 289 185 66 0 chr3 15452911 15452993 -202584165 - MIR SINE MIR -77 131 36 345 195 18 0 chr3 15453327 15453410 -202583748 - MIR SINE MIR -62 146 100 245 338 55 7 chr3 15454496 15454641 -202582517 + L1ME4a LINE L1 5961 6112 -9 445 248 6 64 chr3 15455428 15455585 -202581573 - MIR3 SINE MIR -45 163 16 440 218 12 11 chr3 15455834 15455969 -202581189 - MIR SINE MIR -59 149 37 252 266 0 0 chr3 15456028 15456107 -202581051 - MIR SINE MIR -62 146 68 2101 100 7 0 chr3 15456494 15456799 -202580359 + AluSx SINE Alu 1 307 0 841 271 74 13 chr3 15458015 15458314 -202578844 + MER113 DNA MER1_type? 8 324 -197 183 189 0 0 chr3 15458475 15458512 -202578646 + MIR3 SINE MIR 150 186 -22 345 280 61 30 chr3 15459347 15459479 -202577679 - MIR SINE MIR -117 145 10 478 31 0 0 chr3 15459513 15459578 -202577580 + AluSp/q SINE Alu 243 307 -6 390 258 89 8 chr3 15461297 15461421 -202575737 - MIR SINE MIR -81 181 48 181 219 0 0 chr3 15466763 15466795 -202570363 - MIR SINE MIR -114 148 117 284 274 28 19 chr3 15467752 15467858 -202569300 - MIR3 SINE MIR -91 117 11 192 227 30 45 chr3 15467856 15467922 -202569236 - MIR3 SINE MIR -37 171 107 * 267 146 0 0 chr3 15469948 15470003 -202567155 + (TA)n Simple_repeat Simple_repeat 1 55 0 186 43 0 0 chr3 15471821 15471844 -202565314 + (CA)n Simple_repeat Simple_repeat 1 23 0 249 342 68 27 chr3 15472594 15472857 -202564301 - L1M4 LINE L1 -1232 4914 4641 191 135 19 39 chr3 15474152 15474204 -202562954 - MIR SINE MIR -77 131 81 427 303 74 6 chr3 15474730 15474905 -202562253 - MIR SINE MIR -71 191 5 284 261 81 36 chr3 15475053 15475164 -202561994 - MIR3 SINE MIR -47 161 46 2321 114 0 0 chr3 15475194 15475502 -202561656 + AluSx SINE Alu 1 308 -4 527 0 16 0 chr3 15476346 15476409 -202560749 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 2193 82 24 10 chr3 15476409 15476700 -202560458 - AluSx SINE Alu -17 295 1 408 213 82 41 chr3 15477394 15477516 -202559642 - MIR SINE MIR -86 176 50 671 137 30 18 chr3 15478074 15478242 -202558916 + CT-rich Low_complexity Low_complexity 5 174 0 326 195 13 0 chr3 15478258 15478335 -202558823 + CT-rich Low_complexity Low_complexity 1 78 0 301 241 19 37 chr3 15478551 15478659 -202558499 + MIR SINE MIR 32 137 -71 353 270 51 51 chr3 15479070 15479207 -202557951 - L2 LINE L2 0 3272 3136 439 286 187 50 chr3 15479564 15479906 -202557252 + L2 LINE L2 2884 3272 0 207 261 43 65 chr3 15480917 15481009 -202556149 + MIR SINE MIR 103 192 -70 455 276 31 31 chr3 15481016 15481069 -202556089 - MIR SINE MIR 0 262 210 2385 78 3 0 chr3 15481069 15481362 -202555796 - AluSp SINE Alu -4 309 16 455 276 31 31 chr3 15481362 15481471 -202555687 - MIR SINE MIR -51 211 100 220 316 25 0 chr3 15481471 15481550 -202555608 - MIR SINE MIR -70 138 58 180 0 0 0 chr3 15482605 15482625 -202554533 + (CCCA)n Simple_repeat Simple_repeat 1 20 0 297 274 82 75 chr3 15482960 15483106 -202554052 + MIR SINE MIR 17 163 -99 1720 184 97 35 chr3 15483482 15483817 -202553341 + Charlie4a DNA MER1_type 21 393 -1568 859 178 6 6 chr3 15483817 15483974 -202553184 + FRAM SINE Alu 1 157 -9 1720 184 97 35 chr3 15483974 15484094 -202553064 + Charlie4a DNA MER1_type 393 504 -4 214 280 199 15 chr3 15484619 15484756 -202552402 - MIR SINE MIR -89 173 3 222 259 86 0 chr3 15485133 15485214 -202551944 + MIR SINE MIR 58 145 -63 3191 183 41 17 chr3 15486462 15487100 -202550058 - MER6 DNA MER2_type -183 682 30 2704 154 50 21 chr3 15487108 15487576 -202549582 - L1MB7 LINE L1 -259 5925 5439 2319 115 0 10 chr3 15487576 15487888 -202549270 - AluSx SINE Alu -3 309 1 2704 154 50 21 chr3 15487888 15487944 -202549214 - L1MB7 LINE L1 -745 5439 5386 623 336 51 49 chr3 15488648 15488860 -202548298 + HAL1b LINE L1 66 276 -1072 2350 96 7 0 chr3 15488860 15489161 -202547997 + AluSx SINE Alu 1 303 -9 794 122 30 15 chr3 15489165 15489296 -202547862 + FLAM_C SINE Alu 1 133 0 623 336 51 49 chr3 15489296 15489506 -202547652 + HAL1b LINE L1 278 494 -854 1223 206 104 63 chr3 15489507 15490028 -202547130 + L1ME1 LINE L1 5638 6333 -1 269 299 80 0 chr3 15490025 15490162 -202546996 + HAL1b LINE L1 517 664 -684 * 2098 120 0 20 chr3 15490224 15490336 -202546822 + AluSx SINE Alu 1 114 -198 1827 150 59 31 chr3 15490336 15490690 -202546468 + THE1B LTR MaLR 1 364 0 2098 120 0 20 chr3 15490690 15490878 -202546280 + AluSx SINE Alu 114 295 -17 861 139 19 51 chr3 15490879 15491037 -202546121 + FRAM SINE Alu 8 160 -16 934 238 106 37 chr3 15491058 15491137 -202546021 + L1MC5 LINE L1 6996 7068 -893 2060 130 51 23 chr3 15491137 15491491 -202545667 - THE1B LTR MaLR 0 364 1 934 238 106 37 chr3 15491491 15491815 -202545343 + L1MC5 LINE L1 7068 7427 -534 254 202 18 83 chr3 15491973 15492082 -202545076 + L1ME3A LINE L1 5960 6061 -109 311 267 67 8 chr3 15494224 15494344 -202542814 - MIR SINE MIR -87 175 49 510 233 60 0 chr3 15494543 15494676 -202542482 + L1MB2 LINE L1 6028 6168 -3 1657 186 40 32 chr3 15494981 15495384 -202541774 - L1MB2 LINE L1 -99 6072 5667 222 292 0 13 chr3 15495432 15495505 -202541653 - MIR SINE MIR -112 96 47 1996 82 56 43 chr3 15495831 15496136 -202541022 - AluSx SINE Alu -3 309 1 590 176 146 24 chr3 15496266 15496431 -202540727 - MER5A DNA MER1_type 0 189 5 1805 146 21 7 chr3 15499080 15499360 -202537798 + AluSx SINE Alu 11 294 -18 582 151 126 17 chr3 15499367 15499486 -202537672 + FLAM_C SINE Alu 1 132 -1 7413 22 5 0 chr3 15499488 15500705 -202536453 + L1PA3 LINE L1 4963 6178 0 657 263 160 38 chr3 15500723 15500944 -202536214 + L1MEc LINE L1 93 286 -6110 2431 94 0 0 chr3 15500944 15501251 -202535907 + AluSx SINE Alu 1 307 -5 657 263 160 38 chr3 15501251 15501447 -202535711 + L1MEc LINE L1 286 561 -5835 448 222 78 101 chr3 15501430 15501488 -202535670 + L1MEc LINE L1 1458 1516 -4880 * 2280 89 31 3 chr3 15501488 15501780 -202535378 + AluSg1 SINE Alu 1 300 -9 448 222 78 101 chr3 15501780 15502027 -202535131 + L1MEc LINE L1 1516 1756 -4640 914 150 0 21 chr3 15502030 15502170 -202534988 + AluJo SINE Alu 1 137 -175 2387 119 0 0 chr3 15502190 15502500 -202534658 + AluSx SINE Alu 1 310 -2 659 192 0 0 chr3 15502569 15502694 -202534464 + AluJb SINE Alu 179 303 -9 1006 297 82 5 chr3 15502694 15503111 -202534047 + L1MEc LINE L1 1759 2207 -4189 408 241 98 0 chr3 15503089 15503222 -202533936 + L1MD3 LINE L1 7833 7978 -86 * 268 277 62 54 chr3 15503325 15503455 -202533703 + MER5A DNA MER1_type 37 167 -22 526 153 59 0 chr3 15503949 15504034 -202533124 + MER33 DNA MER1_type 27 116 -208 1829 144 7 4 chr3 15504035 15504306 -202532852 + AluJb SINE Alu 18 289 -23 688 157 170 7 chr3 15504310 15504463 -202532695 + Tigger1 DNA MER2_type 2241 2418 0 428 289 67 26 chr3 15505799 15505993 -202531165 + MIR3 SINE MIR 5 206 -2 242 203 40 54 chr3 15508053 15508127 -202529031 + MIR SINE MIR 59 131 -77 356 240 96 41 chr3 15509103 15509269 -202527889 - MIR SINE MIR -61 147 14 219 200 150 0 chr3 15509870 15509950 -202527208 - MIR3 SINE MIR -7 201 110 243 0 0 0 chr3 15510154 15510181 -202526977 + (A)n Simple_repeat Simple_repeat 1 27 0 312 247 26 0 chr3 15510270 15510347 -202526811 + MIR SINE MIR 105 183 -79 186 200 0 0 chr3 15511638 15511673 -202525485 + MIR SINE MIR 114 148 -114 241 267 16 0 chr3 15511979 15512049 -202525109 - MIR SINE MIR -62 146 84 27 62 0 0 chr3 15512388 15512436 -202524722 + AT_rich Low_complexity Low_complexity 1 48 0 212 197 0 33 chr3 15512590 15512651 -202524507 + GA-rich Low_complexity Low_complexity 2 60 0 263 239 261 0 chr3 15513507 15513599 -202523559 + MER5A DNA MER1_type 39 154 -35 295 295 168 20 chr3 15514159 15514308 -202522850 + MIR SINE MIR 75 245 -17 320 278 176 62 chr3 15514312 15514488 -202522670 - MIR SINE MIR -1 261 66 730 119 40 17 chr3 15515197 15515373 -202521785 + CT-rich Low_complexity Low_complexity 1 180 0 296 188 14 0 chr3 15515395 15515464 -202521694 + CT-rich Low_complexity Low_complexity 1 70 0 301 241 19 37 chr3 15515680 15515788 -202521370 + MIR SINE MIR 32 137 -71 353 270 51 51 chr3 15516199 15516336 -202520822 - L2 LINE L2 0 3272 3136 445 298 175 38 chr3 15516693 15517035 -202520123 + L2 LINE L2 2884 3272 0 207 261 43 65 chr3 15518046 15518138 -202519020 + MIR SINE MIR 103 192 -70 455 276 31 31 chr3 15518145 15518198 -202518960 - MIR SINE MIR 0 262 210 2385 78 3 0 chr3 15518198 15518491 -202518667 - AluSp SINE Alu -4 309 16 455 276 31 31 chr3 15518491 15518600 -202518558 - MIR SINE MIR -51 211 100 220 316 25 0 chr3 15518600 15518679 -202518479 - MIR SINE MIR -70 138 58 180 0 0 0 chr3 15519734 15519754 -202517404 + (CCCA)n Simple_repeat Simple_repeat 1 20 0 305 219 110 103 chr3 15520089 15520235 -202516923 + MIR SINE MIR 17 163 -99 1732 184 97 35 chr3 15520611 15520946 -202516212 + Charlie4a DNA MER1_type 21 393 -1568 859 178 6 6 chr3 15520946 15521103 -202516055 + FRAM SINE Alu 1 157 -9 1732 184 97 35 chr3 15521103 15521223 -202515935 + Charlie4a DNA MER1_type 393 504 -4 214 280 199 15 chr3 15521748 15521885 -202515273 - MIR SINE MIR -89 173 3 222 259 86 0 chr3 15522262 15522343 -202514815 + MIR SINE MIR 58 145 -63 3142 185 41 19 chr3 15523591 15524230 -202512928 - MER6 DNA MER2_type -183 682 30 2614 150 56 0 chr3 15524238 15524705 -202512453 - L1MB7 LINE L1 -259 5925 5433 2394 93 0 10 chr3 15524706 15525017 -202512141 - AluY SINE Alu -3 308 1 362 241 12 18 chr3 15525179 15525290 -202511868 + MLT1I LTR MaLR 318 409 0 1242 140 0 0 chr3 15525583 15525761 -202511397 + AluSg/x SINE Alu 133 310 0 488 224 35 9 chr3 15525890 15526006 -202511152 + MIR SINE MIR 38 156 -106 184 289 0 0 chr3 15526051 15526096 -202511062 - MIR SINE MIR -141 67 23 540 301 112 45 chr3 15526711 15527067 -202510091 + L2 LINE L2 2922 3301 -12 1033 118 7 0 chr3 15527069 15527204 -202509954 + AluSq/x SINE Alu 1 136 -177 1925 149 0 30 chr3 15527204 15527499 -202509659 + AluSx SINE Alu 1 286 -26 1618 136 0 0 chr3 15527604 15527832 -202509326 - AluSg/x SINE Alu 0 312 85 928 115 0 0 chr3 15527865 15527995 -202509163 - FLAM_C SINE Alu -2 131 2 456 128 0 53 chr3 15528024 15528118 -202509040 + FLAM_C SINE Alu 55 143 0 368 324 83 0 chr3 15528166 15528311 -202508847 - MIR3 SINE MIR 0 208 52 22 0 0 0 chr3 15528585 15528607 -202508551 + AT_rich Low_complexity Low_complexity 1 22 0 1570 203 7 7 chr3 15528612 15528913 -202508245 + AluJo SINE Alu 6 306 -6 211 313 104 0 chr3 15529012 15529079 -202508079 - L2 LINE L2 -50 3222 3149 292 169 104 0 chr3 15529357 15529434 -202507724 + L1M LINE L1 5264 5348 -996 2386 103 0 0 chr3 15529449 15529751 -202507407 + AluSx SINE Alu 1 302 -10 2236 117 0 7 chr3 15529949 15530248 -202506910 + AluSx SINE Alu 1 297 -15 1971 155 3 19 chr3 15530431 15530748 -202506410 + AluJo SINE Alu 1 312 0 238 215 178 37 chr3 15530815 15530876 -202506282 + MLT1H LTR MaLR 420 471 -78 2025 114 35 14 chr3 15530876 15531166 -202505992 + AluSx SINE Alu 1 296 -16 238 215 178 37 chr3 15531166 15531211 -202505947 + MLT1H LTR MaLR 471 541 -8 2720 30 0 0 chr3 15531235 15531531 -202505627 + AluYa5 SINE Alu 1 296 -15 2364 67 0 0 chr3 15531582 15531894 -202505264 + AluY SINE Alu 1 312 0 323 295 65 9 chr3 15532142 15532300 -202504858 + MIR SINE MIR 34 202 -60 180 363 26 9 chr3 15532681 15532794 -202504364 - L2 LINE L2 -527 2787 2673 317 172 184 11 chr3 15533019 15533106 -202504052 + MIR SINE MIR 84 185 -77 308 285 28 56 chr3 15533401 15533545 -202503613 - MIR3 SINE MIR -61 147 8 2491 89 0 0 chr3 15533549 15533852 -202503306 - AluSx SINE Alu -9 303 1 373 235 68 53 chr3 15533854 15533986 -202503172 - MIR SINE MIR -62 146 12 340 288 144 44 chr3 15534227 15534281 -202502877 + L1ME4a LINE L1 5675 5722 -399 1865 158 10 13 chr3 15534281 15534579 -202502579 + AluJo SINE Alu 1 297 -15 340 288 144 44 chr3 15534579 15534753 -202502405 + L1ME4a LINE L1 5722 5926 -195 673 217 25 31 chr3 15534777 15534938 -202502220 - MIR SINE MIR -17 245 86 255 221 0 65 chr3 15535136 15535213 -202501945 - MIR SINE MIR -139 123 52 358 238 24 0 chr3 15535592 15535676 -202501482 + MIR SINE MIR 98 183 -79 2353 105 0 0 chr3 15536006 15536312 -202500846 + AluY SINE Alu 1 306 -5 1883 162 13 3 chr3 15536345 15536648 -202500510 - AluJo SINE Alu 0 312 7 2004 139 14 17 chr3 15536666 15536961 -202500197 - AluJb SINE Alu -18 294 1 2316 76 31 3 chr3 15537296 15537586 -202499572 - AluSc SINE Alu -11 298 1 222 349 112 18 chr3 15537795 15537964 -202499194 - MIR SINE MIR -27 235 51 2002 106 0 22 chr3 15538174 15538449 -202498709 + AluSx SINE Alu 44 312 0 364 226 69 0 chr3 15538676 15538778 -202498380 - L1MC5 LINE L1 -35 7926 7818 254 295 32 0 chr3 15539449 15539544 -202497614 - MER113 DNA MER1_type? -415 106 9 402 206 14 78 chr3 15539664 15539805 -202497353 - LTR16B LTR ERVL -4 460 329 231 323 31 23 chr3 15539930 15540060 -202497098 - LTR16B LTR ERVL -331 133 3 2348 105 0 0 chr3 15540218 15540514 -202496644 - AluSx SINE Alu -10 302 7 1594 101 18 0 chr3 15540527 15540745 -202496413 - AluSg/x SINE Alu -18 294 73 210 37 0 0 chr3 15540745 15540772 -202496386 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 672 238 21 0 chr3 15540772 15540915 -202496243 - FRAM SINE Alu -19 147 2 2333 112 3 0 chr3 15541375 15541679 -202495479 + AluSx SINE Alu 1 305 -7 512 225 7 80 chr3 15541849 15541976 -202495182 + MIR SINE MIR 89 205 -57 1531 158 25 60 chr3 15541976 15542146 -202495012 - AluJo SINE Alu -22 290 132 2438 99 0 0 chr3 15542146 15542448 -202494710 + AluY SINE Alu 1 302 -9 1531 158 25 60 chr3 15542448 15542561 -202494597 - AluJo SINE Alu -180 132 17 512 225 7 80 chr3 15542561 15542584 -202494574 + MIR SINE MIR 205 228 -34 297 328 81 15 chr3 15542942 15543140 -202494018 + MIR SINE MIR 40 250 -12 2361 98 0 9 chr3 15543574 15543889 -202493269 - AluSx SINE Alu 0 312 1 182 33 67 0 chr3 15543890 15543920 -202493238 + T-rich Low_complexity Low_complexity 2 33 0 863 167 0 0 chr3 15543923 15544055 -202493103 + AluJb SINE Alu 157 288 -24 652 226 27 21 chr3 15544057 15544243 -202492915 + ORSL DNA AcHobo 89 275 0 833 250 48 0 chr3 15544275 15544483 -202492675 + AluJo SINE Alu 3 220 -92 235 175 0 0 chr3 15544483 15544523 -202492635 + Alu SINE Alu 86 125 -177 2134 117 13 13 chr3 15544524 15544831 -202492327 - AluSx SINE Alu -5 307 1 842 165 23 0 chr3 15544831 15544964 -202492194 - AluJo SINE Alu -176 136 1 499 230 138 0 chr3 15544990 15545142 -202492016 + MER96 DNA MER1_type 1 173 -2 388 282 0 10 chr3 15545147 15545250 -202491908 - L2 LINE L2 -32 3281 3180 1887 161 26 19 chr3 15545906 15546025 -202491133 + AluJo SINE Alu 1 118 -194 2446 81 3 19 chr3 15546025 15546335 -202490823 - AluSg SINE Alu -5 305 1 1887 161 26 19 chr3 15546335 15546525 -202490633 + AluJo SINE Alu 118 312 0 1875 141 39 0 chr3 15546665 15546948 -202490210 + AluJo SINE Alu 1 294 -18 368 111 16 0 chr3 15546980 15547043 -202490115 + (TA)n Simple_repeat Simple_repeat 1 64 0 709 215 101 0 chr3 15547044 15547202 -202489956 - MIR SINE MIR -3 259 86 253 294 125 22 chr3 15547291 15547427 -202489731 - MIR SINE MIR -52 210 61 410 322 22 77 chr3 15547454 15547727 -202489431 + MIR SINE MIR 5 262 0 403 232 182 17 chr3 15548546 15548669 -202488489 - MIR SINE MIR -50 212 111 2225 180 81 5 chr3 15548669 15549113 -202488045 + MER66A LTR ERV1 1 478 0 403 232 182 17 chr3 15549113 15549170 -202487988 - MIR SINE MIR -151 111 2 722 237 6 17 chr3 15549341 15549518 -202487640 - MER5B DNA MER1_type 0 178 4 2258 125 0 6 chr3 15549542 15549853 -202487305 + AluSx SINE Alu 1 309 -3 1439 112 0 0 chr3 15549935 15550123 -202487035 + AluSg/x SINE Alu 109 296 -16 1939 160 76 78 chr3 15550134 15550633 -202486525 - MER11A LTR ERVK -738 528 31 827 198 4 70 chr3 15550762 15551020 -202486138 - AluSx SINE Alu -31 281 41 895 168 38 32 chr3 15551180 15551365 -202485793 + MER5A DNA MER1_type 4 189 0 2503 75 3 3 chr3 15551368 15551675 -202485483 + AluSp SINE Alu 1 307 -6 2243 112 3 6 chr3 15551685 15551997 -202485161 + AluSx SINE Alu 1 311 -1 961 122 0 98 chr3 15551997 15552185 -202484973 + AluSg/x SINE Alu 132 303 0 1008 175 0 63 chr3 15552867 15553073 -202484085 - AluJo SINE Alu 0 312 120 843 168 60 12 chr3 15553073 15553240 -202483918 - MER46A DNA MER2_type -61 175 1 474 223 76 38 chr3 15553671 15553828 -202483330 - MER103 DNA DNA -3 163 1 2034 120 7 48 chr3 15554431 15554603 -202482555 - AluSx SINE Alu -16 296 118 246 32 0 0 chr3 15554603 15554634 -202482524 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2380 74 3 0 chr3 15554634 15554918 -202482240 - AluSp SINE Alu -28 285 1 2034 120 7 48 chr3 15554918 15555053 -202482105 - AluSx SINE Alu -192 120 1 540 301 112 45 chr3 15555055 15555411 -202481747 - L2 LINE L2 -12 3301 2922 184 289 0 0 chr3 15556026 15556071 -202481087 + MIR SINE MIR 23 67 -141 488 224 35 9 chr3 15556116 15556232 -202480926 - MIR SINE MIR -106 156 38 1242 140 0 0 chr3 15556361 15556539 -202480619 - AluSg/x SINE Alu 0 310 133 362 241 12 18 chr3 15556832 15556943 -202480215 - MLT1I LTR MaLR 0 409 318 2518 51 0 3 chr3 15557105 15557400 -202479758 + AluY SINE Alu 1 294 -17 535 243 43 37 chr3 15557539 15557825 -202479333 + L2 LINE L2 2783 3063 -250 189 0 0 0 chr3 15557971 15557992 -202479166 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 400 48 32 0 chr3 15558116 15558179 -202478979 + (TG)n Simple_repeat Simple_repeat 1 65 0 1901 98 0 0 chr3 15558768 15559004 -202478154 + AluSx SINE Alu 40 275 -37 1895 147 0 60 chr3 15559414 15559733 -202477425 + AluJb SINE Alu 1 300 -12 185 386 51 0 chr3 15560182 15560340 -202476818 - MIR SINE MIR -53 209 44 1856 146 28 0 chr3 15561367 15561655 -202475503 + AluJo SINE Alu 1 296 -16 189 250 0 39 chr3 15561684 15561736 -202475422 - MIR SINE MIR -100 162 113 2323 115 0 0 chr3 15562203 15562507 -202474651 - AluSx SINE Alu -8 304 1 2403 103 0 22 chr3 15563188 15563507 -202473651 + AluSx SINE Alu 1 312 0 2581 64 0 0 chr3 15563663 15563959 -202473199 + AluY SINE Alu 1 296 -15 2396 64 0 0 chr3 15564010 15564322 -202472836 + AluY SINE Alu 1 312 0 323 295 65 9 chr3 15564570 15564728 -202472430 + MIR SINE MIR 34 202 -60 180 363 26 9 chr3 15565109 15565222 -202471936 - L2 LINE L2 -527 2787 2673 317 172 184 11 chr3 15565447 15565534 -202471624 + MIR SINE MIR 84 185 -77 308 290 28 55 chr3 15565829 15565974 -202471184 - MIR3 SINE MIR -60 148 8 2491 89 0 0 chr3 15565978 15566281 -202470877 - AluSx SINE Alu -9 303 1 373 235 68 53 chr3 15566283 15566415 -202470743 - MIR SINE MIR -62 146 12 340 288 144 44 chr3 15566656 15566710 -202470448 + L1ME4a LINE L1 5675 5722 -399 1865 158 10 13 chr3 15566710 15567008 -202470150 + AluJo SINE Alu 1 297 -15 340 288 144 44 chr3 15567008 15567182 -202469976 + L1ME4a LINE L1 5722 5926 -195 1759 131 15 19 chr3 15567230 15567498 -202469660 - AluJb SINE Alu -45 267 1 248 219 0 2 chr3 15567557 15567606 -202469552 + MIR SINE MIR 43 90 -118 2030 140 7 3 chr3 15567844 15568136 -202469022 + AluSx SINE Alu 1 293 -19 435 215 19 166 chr3 15568184 15568352 -202468806 + L2 LINE L2 3087 3204 -109 1741 172 0 39 chr3 15568352 15568660 -202468498 - AluJb SINE Alu -16 296 1 435 215 19 166 chr3 15568660 15568756 -202468402 + L2 LINE L2 3204 3312 -1 375 291 64 7 chr3 15568765 15568906 -202468252 + Charlie8 DNA MER1_type 117 265 -2152 1781 132 68 32 chr3 15569197 15569478 -202467680 + AluSx SINE Alu 1 291 -21 983 120 0 120 chr3 15569515 15569533 -202467625 + AluSg/x SINE Alu 119 138 -165 2217 114 10 0 chr3 15569533 15569841 -202467317 + AluSx SINE Alu 1 311 -1 983 120 0 120 chr3 15569841 15570029 -202467129 + AluSg/x SINE Alu 138 303 0 1008 175 0 63 chr3 15570711 15570917 -202466241 - AluJo SINE Alu 0 312 120 843 168 60 12 chr3 15570917 15571084 -202466074 - MER46A DNA MER2_type -61 175 1 2293 82 0 7 chr3 15571425 15571717 -202465441 - AluY SINE Alu -21 290 1 813 155 0 16 chr3 15571719 15571848 -202465310 - AluJo SINE Alu -180 132 6 2261 109 13 10 chr3 15571898 15572209 -202464949 + AluSx SINE Alu 1 312 0 999 167 29 17 chr3 15572219 15572393 -202464765 - AluJb SINE Alu -18 294 119 2356 115 0 0 chr3 15572500 15572804 -202464354 + AluSx SINE Alu 1 304 -8 2454 57 0 20 chr3 15573996 15574297 -202462861 + AluY SINE Alu 1 295 -16 1961 110 57 11 chr3 15574489 15574770 -202462388 + AluSx SINE Alu 1 294 -18 2199 121 0 10 chr3 15575007 15575305 -202461853 + AluSq SINE Alu 1 295 -18 636 198 9 0 chr3 15575370 15575486 -202461672 + FLAM_A SINE Alu 1 117 -16 2292 102 6 13 chr3 15575508 15575821 -202461337 - AluSx SINE Alu -1 311 1 822 146 14 0 chr3 15575821 15575965 -202461193 - L1M4 LINE L1 -686 5492 5347 420 209 176 0 chr3 15576051 15576199 -202460959 + L2 LINE L2 2827 3000 -313 1616 217 113 43 chr3 15576203 15576241 -202460917 - MLT1D LTR MaLR -2 503 469 4068 150 75 92 chr3 15576241 15577330 -202459828 - MER11C LTR ERVK 0 1071 1 1616 217 113 43 chr3 15577330 15577761 -202459397 - MLT1D LTR MaLR -36 469 1 442 225 0 42 chr3 15577906 15578026 -202459132 + L2 LINE L2 3180 3294 -19 320 276 131 14 chr3 15578566 15578711 -202458447 + MIR SINE MIR 46 207 -55 542 189 0 0 chr3 15578926 15579016 -202458142 + AluJ/FLAM SINE Alu 2 91 -221 496 75 0 0 chr3 15579013 15579080 -202458078 - Alu SINE Alu -241 68 2 * 799 263 31 24 chr3 15579130 15579385 -202457773 - MIR SINE MIR -4 258 2 306 216 142 68 chr3 15579398 15579560 -202457598 + L1ME4a LINE L1 5946 6119 -2 2066 142 0 10 chr3 15579642 15579952 -202457206 + AluSx SINE Alu 1 307 -5 230 265 41 61 chr3 15579999 15580097 -202457061 - MIR3 SINE MIR -3 205 110 2142 109 7 3 chr3 15580618 15580926 -202456232 - AluSx SINE Alu 0 309 1 999 167 29 17 chr3 15581033 15581207 -202455951 + AluJb SINE Alu 119 294 -18 2261 109 13 10 chr3 15581217 15581528 -202455630 - AluSx SINE Alu 0 312 1 813 155 0 16 chr3 15581578 15581707 -202455451 + AluJo/FLAM SINE Alu 6 132 -180 2502 74 0 6 chr3 15581709 15582020 -202455138 + AluY SINE Alu 1 309 -2 216 0 0 0 chr3 15582167 15582191 -202454967 + (T)n Simple_repeat Simple_repeat 1 24 0 1684 146 9 110 chr3 15582401 15582569 -202454589 - AluJo SINE Alu -11 301 118 222 37 0 0 chr3 15582569 15582596 -202454562 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2338 82 0 0 chr3 15582596 15582878 -202454280 - AluY SINE Alu -29 282 1 1684 146 9 110 chr3 15582878 15582909 -202454249 - AluJo SINE Alu -193 119 86 2517 61 3 0 chr3 15582909 15583202 -202453956 - AluY SINE Alu -17 294 1 1684 146 9 110 chr3 15583202 15583335 -202453823 - AluJo SINE Alu -226 86 1 499 230 138 0 chr3 15583361 15583513 -202453645 + MER96 DNA MER1_type 1 173 -2 388 282 0 10 chr3 15583518 15583621 -202453537 - L2 LINE L2 -32 3281 3180 2375 104 10 0 chr3 15584277 15584586 -202452572 + AluSx SINE Alu 1 312 0 23 33 0 0 chr3 15584705 15584735 -202452423 + AT_rich Low_complexity Low_complexity 1 30 0 1711 154 70 0 chr3 15584913 15585185 -202451973 - AluJo SINE Alu -21 291 1 237 296 99 59 chr3 15585233 15585366 -202451792 - L1MC/D LINE L1 -1926 5882 5756 2152 138 0 13 chr3 15585366 15585540 -202451618 - AluSx SINE Alu -5 307 137 2187 132 0 0 chr3 15585540 15585835 -202451323 - AluSx SINE Alu -17 295 1 2152 138 0 13 chr3 15585835 15585971 -202451187 - AluSx SINE Alu -175 137 1 237 296 99 59 chr3 15585971 15586141 -202451017 - L1MC/D LINE L1 -2052 5756 5567 315 289 240 10 chr3 15586348 15586656 -202450502 - L2 LINE L2 -9 3304 2926 2013 146 69 50 chr3 15587370 15587429 -202449729 + MER65A LTR ERV1 1 57 -388 2024 106 46 7 chr3 15587429 15587712 -202449446 + AluSx SINE Alu 1 294 -18 2013 146 69 50 chr3 15587712 15588056 -202449102 + MER65A LTR ERV1 57 412 -33 2442 99 0 3 chr3 15588057 15588370 -202448788 - AluSx SINE Alu 0 312 1 2575 56 3 0 chr3 15588376 15588682 -202448476 - AluY SINE Alu -4 307 1 1081 70 8 0 chr3 15588682 15588811 -202448347 - AluSq/x SINE Alu -182 130 1 25 0 0 0 chr3 15588812 15588837 -202448321 + AT_rich Low_complexity Low_complexity 1 25 0 2059 150 0 3 chr3 15588873 15589173 -202447985 - AluSx SINE Alu -13 299 1 2211 70 3 14 chr3 15589537 15589848 -202447310 + AluY SINE Alu 1 308 0 1179 287 76 12 chr3 15590018 15590450 -202446708 - MLT1J LTR MaLR -50 461 2 2527 36 19 26 chr3 15590825 15591132 -202446026 - AluY SINE Alu -6 305 1 895 168 38 32 chr3 15591189 15591374 -202445784 + MER5A DNA MER1_type 4 189 0 2553 68 3 3 chr3 15591377 15591685 -202445473 + AluSp SINE Alu 1 308 -5 2243 112 3 6 chr3 15591695 15592007 -202445151 + AluSx SINE Alu 1 311 -1 961 122 0 98 chr3 15592007 15592195 -202444963 + AluSg/x SINE Alu 132 303 0 1018 171 0 63 chr3 15592881 15593086 -202444072 - AluJo SINE Alu -1 311 120 843 168 60 12 chr3 15593086 15593253 -202443905 - MER46A DNA MER2_type -61 175 1 474 223 76 38 chr3 15593684 15593841 -202443317 - MER103 DNA DNA -3 163 1 2046 117 7 48 chr3 15594444 15594616 -202442542 - AluSx SINE Alu -16 296 118 246 32 0 0 chr3 15594616 15594647 -202442511 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2380 74 3 0 chr3 15594647 15594931 -202442227 - AluSp SINE Alu -28 285 1 2046 117 7 48 chr3 15594931 15595066 -202442092 - AluSx SINE Alu -192 120 1 514 303 112 45 chr3 15595068 15595424 -202441734 - L2 LINE L2 -12 3301 2922 184 289 0 0 chr3 15596039 15596084 -202441074 + MIR SINE MIR 23 67 -141 488 224 35 9 chr3 15596129 15596245 -202440913 - MIR SINE MIR -106 156 38 1216 134 0 11 chr3 15596372 15596551 -202440607 - AluSg/x SINE Alu -1 311 135 362 241 12 18 chr3 15596844 15596955 -202440203 - MLT1I LTR MaLR 0 409 318 2537 50 0 3 chr3 15597117 15597414 -202439744 + AluY SINE Alu 1 296 -15 535 243 43 37 chr3 15597553 15597839 -202439319 + L2 LINE L2 2783 3063 -250 189 0 0 0 chr3 15597985 15598006 -202439152 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 382 49 33 0 chr3 15598130 15598191 -202438967 + (TG)n Simple_repeat Simple_repeat 1 63 0 1901 98 0 0 chr3 15598780 15599016 -202438142 + AluSx SINE Alu 40 275 -37 1895 147 0 60 chr3 15599426 15599745 -202437413 + AluJb SINE Alu 1 300 -12 185 386 51 0 chr3 15600194 15600352 -202436806 - MIR SINE MIR -53 209 44 1856 146 28 0 chr3 15601379 15601667 -202435491 + AluJo SINE Alu 1 296 -16 200 231 0 39 chr3 15601696 15601748 -202435410 - MIR SINE MIR -100 162 113 2323 115 0 0 chr3 15602215 15602519 -202434639 - AluSx SINE Alu -8 304 1 2403 103 0 22 chr3 15603200 15603519 -202433639 + AluSx SINE Alu 1 312 0 2581 64 0 0 chr3 15603675 15603971 -202433187 + AluY SINE Alu 1 296 -15 2396 64 0 0 chr3 15604022 15604334 -202432824 + AluY SINE Alu 1 312 0 323 295 65 9 chr3 15604582 15604740 -202432418 + MIR SINE MIR 34 202 -60 180 363 26 9 chr3 15605121 15605234 -202431924 - L2 LINE L2 -527 2787 2673 317 172 184 11 chr3 15605459 15605546 -202431612 + MIR SINE MIR 84 185 -77 308 285 28 56 chr3 15605841 15605985 -202431173 - MIR3 SINE MIR -61 147 8 2491 89 0 0 chr3 15605989 15606292 -202430866 - AluSx SINE Alu -9 303 1 395 242 40 16 chr3 15606294 15606418 -202430740 - MIR SINE MIR -62 146 20 377 262 172 47 chr3 15606663 15606721 -202430437 + L1ME4a LINE L1 5665 5714 -407 1865 158 10 13 chr3 15606721 15607019 -202430139 + AluJo SINE Alu 1 297 -15 377 262 172 47 chr3 15607019 15607193 -202429965 + L1ME4a LINE L1 5714 5926 -195 673 217 25 31 chr3 15607217 15607378 -202429780 - MIR SINE MIR -17 245 86 255 221 0 65 chr3 15607576 15607653 -202429505 - MIR SINE MIR -139 123 52 358 238 24 0 chr3 15608032 15608116 -202429042 + MIR SINE MIR 98 183 -79 2353 105 0 0 chr3 15608446 15608752 -202428406 + AluY SINE Alu 1 306 -5 2013 142 13 3 chr3 15608786 15609089 -202428069 - AluJo SINE Alu 0 312 7 2004 139 14 17 chr3 15609107 15609402 -202427756 - AluJb SINE Alu -18 294 1 2316 76 31 3 chr3 15609737 15610027 -202427131 - AluSc SINE Alu -11 298 1 222 349 112 18 chr3 15610236 15610405 -202426753 - MIR SINE MIR -27 235 51 2002 106 0 22 chr3 15610615 15610890 -202426268 + AluSx SINE Alu 44 312 0 364 226 69 0 chr3 15611117 15611219 -202425939 - L1MC5 LINE L1 -35 7926 7818 254 295 32 0 chr3 15611890 15611985 -202425173 - MER113 DNA MER1_type? -415 106 9 336 206 52 81 chr3 15612105 15612241 -202424917 - LTR16B LTR ERVL -4 460 329 2331 108 0 0 chr3 15612654 15612950 -202424208 - AluSx SINE Alu -10 302 7 1587 101 18 0 chr3 15612963 15613180 -202423978 - AluSg/x SINE Alu -19 293 73 210 37 0 0 chr3 15613180 15613207 -202423951 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 672 238 21 0 chr3 15613207 15613350 -202423808 - FRAM SINE Alu -19 147 2 2333 112 3 0 chr3 15613810 15614114 -202423044 + AluSx SINE Alu 1 305 -7 512 225 7 80 chr3 15614284 15614411 -202422747 + MIR SINE MIR 89 205 -57 1601 157 25 46 chr3 15614411 15614581 -202422577 - AluJo SINE Alu -22 290 127 2593 70 0 0 chr3 15614581 15614883 -202422275 + AluY SINE Alu 1 302 -9 1601 157 25 46 chr3 15614883 15614992 -202422166 - AluJo SINE Alu -185 127 17 512 225 7 80 chr3 15614992 15615015 -202422143 + MIR SINE MIR 205 228 -34 297 328 81 15 chr3 15615373 15615571 -202421587 + MIR SINE MIR 40 250 -12 2361 98 0 9 chr3 15616005 15616320 -202420838 - AluSx SINE Alu 0 312 1 182 33 67 0 chr3 15616321 15616351 -202420807 + T-rich Low_complexity Low_complexity 2 33 0 863 167 0 0 chr3 15616354 15616486 -202420672 + AluJb SINE Alu 157 288 -24 652 226 27 21 chr3 15616488 15616674 -202420484 + ORSL DNA AcHobo 89 275 0 817 153 0 0 chr3 15616706 15616824 -202420334 + FLAM_A SINE Alu 2 119 -23 586 190 0 0 chr3 15616854 15616954 -202420204 + AluJb SINE Alu 26 125 -187 2157 114 13 13 chr3 15616955 15617262 -202419896 - AluSx SINE Alu -5 307 1 1905 124 59 0 chr3 15617268 15617541 -202419617 - AluSx SINE Alu -23 289 1 1224 213 8 12 chr3 15618047 15618291 -202418867 - MIR SINE MIR 0 262 20 2302 122 0 0 chr3 15618390 15618702 -202418456 - AluSx SINE Alu 0 312 1 1487 165 36 56 chr3 15618702 15619004 -202418154 - AluJo SINE Alu -16 296 1 23 0 0 0 chr3 15619014 15619037 -202418121 + AT_rich Low_complexity Low_complexity 1 23 0 764 164 16 23 chr3 15619140 15619268 -202417890 + FLAM_C SINE Alu 3 129 -14 1994 147 10 0 chr3 15619286 15619578 -202417580 + AluJb SINE Alu 1 295 -17 2263 113 0 23 chr3 15619578 15619888 -202417270 + AluSx SINE Alu 1 303 -9 25 83 0 0 chr3 15619888 15619948 -202417210 + AT_rich Low_complexity Low_complexity 1 60 0 782 186 0 0 chr3 15620034 15620158 -202417000 - FLAM_C SINE Alu -18 125 2 312 70 0 0 chr3 15620225 15620268 -202416890 + (CA)n Simple_repeat Simple_repeat 2 44 0 276 303 94 59 chr3 15620369 15620623 -202416535 - L2 LINE L2 -41 3231 2969 387 264 28 9 chr3 15621051 15621157 -202416001 + MIR SINE MIR 20 127 -135 553 115 0 0 chr3 15621685 15621763 -202415395 + U6 snRNA snRNA 1 78 -29 337 318 59 6 chr3 15621845 15622015 -202415143 + L1M4 LINE L1 4055 4233 -1913 433 380 54 0 chr3 15622315 15622520 -202414638 - MIR SINE MIR -14 248 33 2429 107 0 0 chr3 15622615 15622925 -202414233 + AluSx SINE Alu 1 310 -2 710 328 26 9 chr3 15623151 15623383 -202413775 - MIR SINE MIR -1 261 26 1841 171 26 0 chr3 15623390 15623694 -202413464 + AluJo SINE Alu 1 312 0 2426 90 0 0 chr3 15623781 15624091 -202413067 - AluY SINE Alu -1 310 1 2273 98 10 0 chr3 15624916 15625213 -202411945 - AluSq SINE Alu -13 300 1 1169 45 0 0 chr3 15625584 15625716 -202411442 + AluY SINE Alu 1 132 -179 2594 66 0 0 chr3 15625722 15626027 -202411131 - AluY SINE Alu -6 305 1 1567 147 105 11 chr3 15626035 15626301 -202410857 - AluJb SINE Alu -21 291 1 1900 102 98 0 chr3 15626398 15626662 -202410496 - AluSx SINE Alu -22 290 1 679 261 101 20 chr3 15627421 15627620 -202409538 + MER58C DNA MER1_type 1 215 0 223 316 10 41 chr3 15627689 15627787 -202409371 + (TCCA)n Simple_repeat Simple_repeat 1 95 0 274 219 78 0 chr3 15627851 15627915 -202409243 - L2 LINE L2 -51 3221 3153 433 181 81 128 chr3 15628012 15628161 -202408997 + MER103 DNA DNA 24 165 -1 2322 117 0 0 chr3 15628529 15628836 -202408322 + AluSx SINE Alu 1 307 -5 291 196 65 33 chr3 15628858 15628950 -202408208 + MIR SINE MIR 60 154 -108 1161 108 0 0 chr3 15629162 15629191 -202407967 + (CCCA)n Simple_repeat Simple_repeat 1 205 0 1161 108 0 0 chr3 15629191 15629367 -202407791 + (CCCA)n Simple_repeat Simple_repeat 3 178 0 489 222 95 16 chr3 15629998 15630124 -202407034 - MIR SINE MIR -116 146 11 2403 85 0 3 chr3 15630398 15630704 -202406454 - AluY SINE Alu -6 305 1 222 305 12 0 chr3 15630744 15630826 -202406332 + (TA)n Simple_repeat Simple_repeat 2 84 0 2077 105 3 86 chr3 15631342 15631667 -202405491 + AluSx SINE Alu 1 298 -14 2273 110 0 7 chr3 15631867 15632166 -202404992 + AluSx SINE Alu 1 297 -15 267 313 114 30 chr3 15632178 15632344 -202404814 - MIR SINE MIR -35 227 48 2454 56 0 3 chr3 15632368 15632654 -202404504 - AluY SINE Alu -5 306 22 345 270 63 48 chr3 15632704 15632830 -202404328 - MIR SINE MIR -88 174 47 27 0 0 0 chr3 15632932 15632959 -202404199 + AT_rich Low_complexity Low_complexity 1 27 0 241 353 85 0 chr3 15633480 15633633 -202403525 + L1ME LINE L1 5534 5699 -422 2267 92 0 26 chr3 15633643 15633947 -202403211 - AluSx SINE Alu -16 296 1 836 206 0 0 chr3 15633979 15634120 -202403038 - FRAM SINE Alu -35 141 1 1778 188 101 3 chr3 15634124 15634502 -202402656 - L1ME1 LINE L1 -62 6104 5690 2193 108 10 10 chr3 15634525 15634831 -202402327 + AluSx SINE Alu 1 306 -6 332 250 32 90 chr3 15634943 15635011 -202402147 + MIR SINE MIR 114 184 -78 875 165 0 88 chr3 15635011 15635193 -202401965 - FRAM SINE Alu 0 166 1 332 250 32 90 chr3 15635193 15635280 -202401878 + MIR SINE MIR 184 260 -2 1036 191 23 56 chr3 15635289 15635448 -202401710 - AluJo SINE Alu -21 291 139 2112 131 3 13 chr3 15635448 15635762 -202401396 - AluSx SINE Alu -1 311 1 1036 191 23 56 chr3 15635762 15635817 -202401341 - AluJo SINE Alu -173 139 84 22 35 0 0 chr3 15635850 15635879 -202401279 + AT_rich Low_complexity Low_complexity 1 29 0 2027 151 0 3 chr3 15636001 15636299 -202400859 - AluSx SINE Alu -15 297 1 759 179 8 0 chr3 15636396 15636519 -202400639 - FLAM_C SINE Alu -17 126 3 2539 50 0 3 chr3 15636551 15636850 -202400308 + AluY SINE Alu 1 298 -13 1566 207 4 0 chr3 15637486 15637742 -202399416 + AluJb SINE Alu 1 257 -55 2112 134 0 6 chr3 15637743 15638056 -202399102 - AluSx SINE Alu -1 311 1 24 85 0 0 chr3 15638133 15638192 -202398966 + AT_rich Low_complexity Low_complexity 1 59 0 295 335 26 79 chr3 15638472 15638558 -202398600 - MIR SINE MIR -16 246 170 2001 117 10 45 chr3 15638558 15638866 -202398292 - AluSx SINE Alu -15 297 1 295 335 26 79 chr3 15638866 15638931 -202398227 - MIR SINE MIR -92 170 103 970 142 58 0 chr3 15640011 15640166 -202396992 - AluSg/x SINE Alu -12 298 135 184 148 0 0 chr3 15640202 15640229 -202396929 - MIR3 SINE MIR -27 181 155 285 261 194 45 chr3 15640404 15640538 -202396620 - MIR3 SINE MIR -25 183 30 549 312 84 15 chr3 15640841 15641046 -202396112 - L2 LINE L2 -341 2973 2745 2353 117 7 0 chr3 15641046 15641354 -202395804 - AluSx SINE Alu -2 310 1 549 312 84 15 chr3 15641354 15641411 -202395747 - L2 LINE L2 -569 2745 2693 1397 236 55 18 chr3 15641480 15641878 -202395280 - MLT1J LTR MaLR 0 511 99 247 326 45 11 chr3 15641909 15641998 -202395160 - L2 LINE L2 -224 3048 2957 311 333 0 60 chr3 15642048 15642198 -202394960 + MIR3 SINE MIR 1 141 -67 2526 71 3 0 chr3 15642232 15642540 -202394618 + AluY SINE Alu 1 309 -2 398 52 0 17 chr3 15642620 15642678 -202394480 + (TG)n Simple_repeat Simple_repeat 1 57 0 198 143 0 0 chr3 15642804 15642839 -202394319 + (CA)n Simple_repeat Simple_repeat 2 36 0 396 251 131 73 chr3 15643002 15643261 -202393897 - MLT1K LTR MaLR -162 426 153 337 302 102 50 chr3 15643790 15644137 -202393021 + L2 LINE L2 2344 2714 -600 2310 78 0 56 chr3 15644137 15644458 -202392700 + AluSx SINE Alu 1 303 -9 337 302 102 50 chr3 15644458 15644494 -202392664 + L2 LINE L2 2714 2747 -567 2316 110 0 3 chr3 15644575 15644876 -202392282 + AluSx SINE Alu 1 300 -12 1414 170 117 14 chr3 15644886 15645168 -202391990 + AluJb SINE Alu 1 311 -1 2262 104 7 7 chr3 15645168 15645476 -202391682 + AluSq SINE Alu 1 308 -5 2206 136 0 7 chr3 15645541 15645851 -202391307 - AluSx SINE Alu -4 308 1 775 237 6 17 chr3 15645875 15646052 -202391106 + MER5B DNA MER1_type 4 178 0 447 226 182 17 chr3 15646223 15646280 -202390878 + MIR SINE MIR 2 48 -214 2359 173 88 11 chr3 15646280 15646724 -202390434 - MER66A LTR ERV1 0 478 1 447 226 182 17 chr3 15646724 15646847 -202390311 + MIR SINE MIR 48 212 -50 438 304 22 77 chr3 15647666 15647939 -202389219 - MIR SINE MIR 0 262 5 286 294 125 22 chr3 15647966 15648102 -202389056 + MIR SINE MIR 61 210 -52 752 215 101 0 chr3 15648191 15648349 -202388809 + MIR SINE MIR 86 259 -3 350 115 16 0 chr3 15648350 15648411 -202388747 + (TA)n Simple_repeat Simple_repeat 1 62 0 1906 138 39 0 chr3 15648443 15648726 -202388432 - AluSx SINE Alu -18 294 1 2282 127 0 3 chr3 15648849 15649157 -202388001 - AluSx SINE Alu -5 307 1 2493 82 0 0 chr3 15649683 15649986 -202387172 - AluSx SINE Alu -9 303 1 2463 69 3 3 chr3 15650144 15650448 -202386710 + AluY SINE Alu 1 304 -7 1649 155 34 26 chr3 15650613 15650878 -202386280 - AluJo SINE Alu -45 267 1 245 197 115 0 chr3 15651436 15651497 -202385661 + L2 LINE L2 2792 2859 -455 193 290 129 32 chr3 15651598 15651722 -202385436 - L2 LINE L2 -554 2760 2625 2475 78 0 7 chr3 15652602 15652910 -202384248 - AluSx SINE Alu -6 306 1 182 33 67 0 chr3 15652911 15652941 -202384217 + T-rich Low_complexity Low_complexity 2 33 0 854 167 0 0 chr3 15652944 15653076 -202384082 + AluJb SINE Alu 157 288 -24 639 226 27 21 chr3 15653078 15653264 -202383894 + ORSL DNA AcHobo 89 275 0 809 153 0 0 chr3 15653296 15653414 -202383744 + FLAM_A SINE Alu 2 119 -14 237 214 36 0 chr3 15653444 15653500 -202383658 + AluJ/FLAM SINE Alu 26 83 -219 1997 142 7 3 chr3 15653617 15653913 -202383245 + AluSx SINE Alu 1 297 -15 2208 99 10 7 chr3 15653926 15654219 -202382939 + AluSg SINE Alu 1 294 -16 2429 89 3 3 chr3 15654309 15654612 -202382546 - AluSp SINE Alu -10 303 1 1256 185 104 57 chr3 15654881 15655178 -202381980 + AluJo SINE Alu 1 311 -1 2323 91 0 0 chr3 15655178 15655509 -202381649 + AluY SINE Alu 1 331 0 893 146 0 33 chr3 15655531 15655682 -202381476 + AluSq/x SINE Alu 1 146 -166 1328 179 9 0 chr3 15655686 15655910 -202381248 + AluJb SINE Alu 85 310 -2 510 158 246 0 chr3 15656602 15656716 -202380442 - FLAM_C SINE Alu 0 143 2 2228 126 0 0 chr3 15656941 15657243 -202379915 - AluSg SINE Alu -8 302 1 219 320 70 39 chr3 15657319 15657447 -202379711 + MIR SINE MIR 91 222 -40 24 0 0 0 chr3 15657622 15657646 -202379512 + AT_rich Low_complexity Low_complexity 1 24 0 443 232 0 65 chr3 15657736 15657874 -202379284 + MIR SINE MIR 50 178 -84 2643 136 106 6 chr3 15658519 15658925 -202378233 + L1MB7 LINE L1 5390 5863 -315 4635 47 33 0 chr3 15658925 15659497 -202377661 + LTR10C LTR ERV1 1 591 0 2643 136 106 6 chr3 15659497 15659619 -202377539 + L1MB7 LINE L1 5863 5971 -207 2163 128 0 13 chr3 15659673 15659977 -202377181 - AluSg SINE Alu -7 303 4 316 93 56 0 chr3 15659984 15660038 -202377120 + L1MB7 LINE L1 6119 6175 -9 349 261 91 53 chr3 15660145 15660414 -202376744 - L1MC4a LINE L1 -549 5572 5487 2426 68 0 36 chr3 15660414 15660721 -202376437 - AluY SINE Alu -15 296 1 349 261 91 53 chr3 15660721 15660798 -202376360 - L1MC4a LINE L1 -634 5487 5414 2360 63 25 0 chr3 15660808 15661094 -202376064 - AluY SINE Alu -18 293 1 1918 139 3 7 chr3 15661186 15661487 -202375671 - AluJb SINE Alu -12 300 1 350 261 191 21 chr3 15661487 15661603 -202375555 - L1MC4a LINE L1 -813 5333 5238 1865 105 79 4 chr3 15661603 15661880 -202375278 - AluJb SINE Alu -14 298 1 350 261 191 21 chr3 15661880 15661951 -202375207 - L1MC4a LINE L1 -908 5238 5114 267 196 27 0 chr3 15661975 15662035 -202375123 + MIR SINE MIR 93 153 -58 236 280 0 0 chr3 15662356 15662406 -202374752 - MIR SINE MIR -112 96 47 1980 82 56 43 chr3 15662732 15663037 -202374121 - AluSx SINE Alu -3 309 1 647 176 146 24 chr3 15663167 15663332 -202373826 - MER5A DNA MER1_type 0 189 5 180 294 189 7 chr3 15664594 15664737 -202372421 - MIR SINE MIR -4 258 90 181 272 111 12 chr3 15664797 15664878 -202372280 + L3 LINE CR1 1322 1410 -167 1672 164 21 7 chr3 15665983 15666263 -202370895 + AluSx SINE Alu 11 294 -18 630 151 126 17 chr3 15666270 15666389 -202370769 + FLAM_C SINE Alu 1 132 -1 7716 25 6 0 chr3 15666391 15667584 -202369574 + L1PA3 LINE L1 4963 6155 0 4152 31 0 0 chr3 15667075 15667585 -202369573 + L1PA3 LINE L1 5647 6178 0 199 0 0 0 chr3 15667585 15667607 -202369551 + (TAAAA)n Simple_repeat Simple_repeat 2 180 0 462 241 127 45 chr3 15667625 15667845 -202369313 + L1MEc LINE L1 93 330 -6066 2214 90 3 0 chr3 15667846 15668136 -202369022 + AluSx SINE Alu 1 291 -21 231 151 0 0 chr3 15668171 15668191 -202368967 + A-rich Low_complexity Low_complexity 1 20 -33 1804 100 12 0 chr3 15668191 15668441 -202368717 + AluSx SINE Alu 1 253 -59 231 151 0 0 chr3 15668441 15668473 -202368685 + A-rich Low_complexity Low_complexity 19 53 0 2274 47 54 7 chr3 15668689 15668986 -202368172 - AluY SINE Alu 0 311 1 2118 96 4 0 chr3 15669136 15669417 -202367741 - AluSg SINE Alu -28 282 1 315 320 75 27 chr3 15669428 15669575 -202367583 + L2 LINE L2 3159 3312 -1 568 146 62 0 chr3 15669724 15669820 -202367338 + U13 snRNA snRNA 3 104 0 1943 122 0 7 chr3 15669848 15670144 -202367014 + AluJb SINE Alu 3 296 -16 281 160 264 66 chr3 15671338 15671444 -202365714 - MER5A DNA MER1_type -2 187 61 32 31 0 46 chr3 15671444 15671471 -202365687 + AT_rich Low_complexity Low_complexity 1 28 -34 322 44 0 0 chr3 15671471 15671516 -202365642 - L1PA3 LINE L1 0 6155 6111 32 31 0 46 chr3 15671516 15671553 -202365605 + AT_rich Low_complexity Low_complexity 28 62 0 318 256 0 0 chr3 15671553 15671631 -202365527 - MER5A DNA MER1_type -111 78 1 279 227 18 118 chr3 15671751 15671861 -202365297 - MER103 DNA DNA -65 101 3 1009 229 13 34 chr3 15671943 15672179 -202364979 + MIR SINE MIR 20 250 -12 224 291 0 0 chr3 15674964 15675019 -202362139 + (CA)n Simple_repeat Simple_repeat 1 55 0 227 214 18 18 chr3 15676553 15676609 -202360549 + L2 LINE L2 3258 3313 0 952 229 80 82 chr3 15677112 15677501 -202359657 + Charlie4a DNA MER1_type 120 507 -1 2377 147 17 17 chr3 15677775 15678182 -202358976 + L1MB3 LINE L1 5774 6180 -3 390 121 0 0 chr3 15678853 15678919 -202358239 + (TG)n Simple_repeat Simple_repeat 1 66 0 327 266 57 16 chr3 15679587 15679711 -202357447 - MIR3 SINE MIR -77 131 3 398 226 66 44 chr3 15681101 15681238 -202355920 + MIR3 SINE MIR 19 158 -50 232 129 0 113 chr3 15681485 15681547 -202355611 - L2 LINE L2 -93 3179 3125 194 316 218 10 chr3 15681779 15681972 -202355186 - MIR SINE MIR -10 252 20 358 232 36 72 chr3 15682750 15682888 -202354270 - MIR SINE MIR -80 182 50 275 266 124 0 chr3 15683380 15683493 -202353665 + MIR3 SINE MIR 45 171 -37 1167 278 124 2 chr3 15683623 15684041 -202353117 + L1MC4 LINE L1 7574 8042 0 383 295 66 12 chr3 15684086 15684252 -202352906 + Charlie8 DNA MER1_type 32 206 -2211 194 281 207 2 chr3 15684480 15684599 -202352559 - MIR SINE MIR -61 147 9 330 290 0 69 chr3 15684637 15684768 -202352390 - MIR SINE MIR -57 205 84 212 344 52 0 chr3 15685241 15685337 -202351821 - MIR SINE MIR -147 115 15 274 236 251 5 chr3 15685352 15685548 -202351610 - MIR3 SINE MIR -6 256 7 233 329 52 45 chr3 15686153 15686308 -202350850 - L3 LINE CR1 -58 1519 1364 253 325 196 0 chr3 15686572 15686735 -202350423 - L3 LINE CR1 -952 625 431 587 267 198 42 chr3 15687715 15688048 -202349110 + L2 LINE L2 2926 3310 -3 545 324 89 29 chr3 15688069 15688384 -202348774 + L2 LINE L2 2854 3187 -85 364 256 284 4 chr3 15688568 15688835 -202348323 + L2 LINE L2 2682 3023 -290 288 324 37 0 chr3 15688914 15689022 -202348136 + L2 LINE L2 3200 3311 -2 376 248 46 18 chr3 15689080 15689189 -202347969 + L2 LINE L2 3189 3300 -13 799 192 99 16 chr3 15690104 15690286 -202346872 + MER117 DNA MER1_type 1 197 0 548 267 161 14 chr3 15690855 15691072 -202346086 - MIR SINE MIR -1 261 13 311 286 111 8 chr3 15691091 15691217 -202345941 + MIR SINE MIR 77 215 -47 320 268 118 1 chr3 15691438 15691562 -202345596 + MIR SINE MIR 29 163 -62 190 272 40 96 chr3 15692178 15692303 -202344855 - MIR3 SINE MIR -89 119 2 501 276 79 39 chr3 15692772 15692975 -202344183 + MIR SINE MIR 52 262 0 2052 117 0 32 chr3 15693315 15693624 -202343534 + AluSx SINE Alu 1 299 -13 1504 178 0 36 chr3 15693636 15693911 -202343247 + AluJo SINE Alu 1 265 -47 249 306 0 0 chr3 15693991 15694063 -202343095 - MIR SINE MIR -115 147 76 22 35 0 0 chr3 15694625 15694654 -202342504 + AT_rich Low_complexity Low_complexity 1 29 0 341 266 0 81 chr3 15694961 15695085 -202342073 + MIR SINE MIR 103 216 -46 371 270 92 25 chr3 15695371 15695534 -202341624 + MIR SINE MIR 61 234 -28 307 89 36 0 chr3 15696167 15696223 -202340935 + CT-rich Low_complexity Low_complexity 2 59 0 251 321 0 0 chr3 15697753 15697834 -202339324 + MIR3 SINE MIR 78 158 -50 553 240 91 11 chr3 15697943 15698118 -202339040 + MIR SINE MIR 29 217 -45 312 325 18 0 chr3 15698175 15698289 -202338869 - L2 LINE L2 -541 2773 2658 358 267 107 7 chr3 15698949 15699099 -202338059 - LTR16A1 LTR ERVL -30 427 263 299 211 0 0 chr3 15700081 15700138 -202337020 + MIR SINE MIR 85 141 -67 1013 241 70 70 chr3 15700142 15700516 -202336642 + L2 LINE L2 2940 3313 0 222 255 0 0 chr3 15700587 15700634 -202336524 - L2 LINE L2 -3 3310 3264 * 626 237 39 56 chr3 15700614 15700846 -202336312 - MIR SINE MIR -7 255 28 852 241 20 5 chr3 15701319 15701518 -202335640 - Charlie8 DNA MER1_type -2144 273 72 976 160 16 94 chr3 15702634 15702697 -202334461 - MER33 DNA MER1_type -2261 363 297 843 146 8 8 chr3 15702697 15702827 -202334331 + FLAM_C SINE Alu 2 131 -2 976 160 16 94 chr3 15702827 15703144 -202334014 - MER33 DNA MER1_type -2327 297 6 246 318 96 44 chr3 15703207 15703448 -202333710 + MIR3 SINE MIR 11 259 -3 320 316 105 0 chr3 15703916 15704049 -202333109 - HAL1b LINE L1 0 1348 1202 365 270 108 0 chr3 15705470 15705581 -202331577 + MIR SINE MIR 27 149 -113 341 276 45 30 chr3 15706342 15706476 -202330682 + MIR3 SINE MIR 27 162 -46 250 249 58 45 chr3 15706542 15706646 -202330512 - MIR SINE MIR -96 112 7 1773 194 71 0 chr3 15706828 15707152 -202330006 + MER7A DNA MER2_type 2 346 0 243 284 147 43 chr3 15707153 15707375 -202329783 - MIR SINE MIR -13 249 13 206 214 0 14 chr3 15707827 15707897 -202329261 + CT-rich Low_complexity Low_complexity 2 70 0 372 247 43 0 chr3 15708267 15708360 -202328798 - MIR SINE MIR -49 213 117 207 0 0 0 chr3 15708779 15708802 -202328356 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 361 257 9 28 chr3 15709044 15709153 -202328005 + MIR SINE MIR 37 143 -65 275 347 7 36 chr3 15709430 15709617 -202327541 + G-rich Low_complexity Low_complexity 1 181 0 * 298 311 0 11 chr3 15709528 15709618 -202327540 + GA-rich Low_complexity Low_complexity 4 92 0 23 0 0 0 chr3 15709705 15709728 -202327430 + GC_rich Low_complexity Low_complexity 1 23 0 2406 201 87 14 chr3 15710291 15710799 -202326359 - MLT1H LTR MaLR -3 546 2 610 229 183 0 chr3 15711997 15712172 -202324986 + MIR SINE MIR 12 218 -44 196 322 0 0 chr3 15712283 15712342 -202324816 - MIR SINE MIR -87 121 63 547 161 17 0 chr3 15712991 15713109 -202324049 + (TGGA)n Simple_repeat Simple_repeat 2 121 0 404 276 174 36 chr3 15713286 15713706 -202323452 - Tigger8 DNA MER2_type -2 664 187 1534 159 0 28 chr3 15713767 15714050 -202323108 - AluSx SINE Alu 0 312 38 389 169 8 39 chr3 15714583 15714713 -202322445 + (TGGA)n Simple_repeat Simple_repeat 1 126 0 330 288 212 0 chr3 15714996 15715114 -202322044 - MIR3 SINE MIR -36 172 30 548 313 0 0 chr3 15715121 15715271 -202321887 + MIR SINE MIR 13 162 -100 276 366 68 14 chr3 15715260 15715483 -202321675 - MIR SINE MIR -15 247 17 * 281 316 10 41 chr3 15715527 15715625 -202321533 + MIR SINE MIR 168 262 0 180 360 11 22 chr3 15715736 15715825 -202321333 - MIR SINE MIR -115 147 60 * 293 361 62 5 chr3 15715809 15716017 -202321141 - L2 LINE L2 -240 3032 2813 662 40 0 0 chr3 15917330 15917405 -202119753 - pTR5 LTR ERV1 -2298 140 66 345 224 31 20 chr3 15917405 15917503 -202119655 - LTR30 LTR ERV1 -80 642 544 4876 117 51 73 chr3 15917503 15918515 -202118643 - pTR5 LTR ERV1 -413 2025 743 548 196 0 83 chr3 15918647 15918780 -202118378 - AluJb SINE Alu -88 224 103 456 308 51 10 chr3 15918800 15918995 -202118163 - MIR SINE MIR -59 203 1 2313 104 0 0 chr3 15919548 15919846 -202117312 - AluSg SINE Alu -12 298 1 210 143 0 0 chr3 15920000 15920035 -202117123 + (TG)n Simple_repeat Simple_repeat 2 36 0 2205 93 0 3 chr3 15920036 15920325 -202116833 - AluSq SINE Alu -25 288 1 1911 81 60 25 chr3 15920917 15921202 -202115956 - AluSx SINE Alu -7 305 11 2495 72 0 0 chr3 15921843 15922147 -202115011 - AluY SINE Alu -7 304 1 942 202 62 44 chr3 15922218 15922269 -202114889 - L1MA6 LINE L1 0 6300 6251 2355 107 3 0 chr3 15922269 15922579 -202114579 - AluSp SINE Alu -2 311 1 942 202 62 44 chr3 15922579 15922799 -202114359 - L1MA6 LINE L1 -49 6251 6024 1818 96 0 63 chr3 15923067 15923337 -202113821 - AluSq SINE Alu -12 301 49 263 192 68 14 chr3 15923454 15923527 -202113631 + L1ME3 LINE L1 5624 5700 -464 243 176 0 59 chr3 15923545 15923613 -202113545 + L1MB4 LINE L1 6117 6180 0 894 236 142 36 chr3 15923618 15923948 -202113210 + L1ME3 LINE L1 5703 6067 -95 1345 199 84 47 chr3 15923985 15924388 -202112770 + MER95 LTR ERV 14 431 0 1995 134 34 0 chr3 15924709 15925007 -202112151 + AluSx SINE Alu 1 308 -4 523 251 41 23 chr3 15925384 15925555 -202111603 + L2 LINE L2 3125 3298 -15 2411 80 0 10 chr3 15926055 15926367 -202110791 + AluSc SINE Alu 1 309 0 499 350 68 23 chr3 15926678 15927207 -202109951 + L2 LINE L2 2140 2692 -622 1989 134 20 0 chr3 15927347 15927639 -202109519 - AluSx SINE Alu -14 298 1 201 345 43 7 chr3 15927717 15927856 -202109302 - L2 LINE L2 -1365 1949 1806 202 216 0 0 chr3 15931183 15931220 -202105938 + CT-rich Low_complexity Low_complexity 2 38 0 2211 103 0 10 chr3 15932258 15932558 -202104600 + AluSx SINE Alu 1 297 -15 1052 185 95 18 chr3 15933398 15933620 -202103538 - MER8 DNA MER2_type 0 239 1 296 235 0 0 chr3 15933655 15933723 -202103435 + MER5A DNA MER1_type 39 106 -83 2216 98 18 0 chr3 15934011 15934297 -202102861 - AluSx SINE Alu -21 291 1 1471 186 90 4 chr3 15935097 15935376 -202101782 + AluJb SINE Alu 1 303 -9 235 306 192 29 chr3 15935409 15935654 -202101504 + MARNA DNA Mariner 125 409 -177 807 151 66 0 chr3 15935656 15935808 -202101350 - FRAM SINE Alu -15 161 1 288 319 26 9 chr3 15936244 15936360 -202100798 + L2 LINE L2 3193 3310 -3 551 220 57 0 chr3 15936511 15936652 -202100506 - MER5A DNA MER1_type -32 157 9 189 0 0 0 chr3 15936830 15936851 -202100307 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2521 53 0 7 chr3 15936909 15937210 -202099948 + AluY SINE Alu 12 310 -1 412 162 0 0 chr3 15937325 15937393 -202099765 + Alu SINE Alu 240 307 -5 620 286 17 6 chr3 15937780 15937955 -202099203 - MIR3 SINE MIR -11 197 21 2076 106 48 0 chr3 15938051 15938343 -202098815 - AluSx SINE Alu -6 306 1 339 69 0 69 chr3 15938369 15938427 -202098731 + MADE1 DNA Mariner 1 54 -26 2147 132 3 0 chr3 15938565 15938876 -202098282 - AluSx SINE Alu 0 312 1 545 242 47 56 chr3 15939464 15939679 -202097479 - MLT1L LTR MaLR -208 407 195 385 307 70 35 chr3 15939961 15940189 -202096969 - MLT1K LTR MaLR -8 580 345 2079 133 0 3 chr3 15940541 15940885 -202096273 + AluSx SINE Alu 1 312 0 24 0 0 0 chr3 15941461 15941485 -202095673 + AT_rich Low_complexity Low_complexity 1 24 0 2534 78 7 0 chr3 15942108 15942452 -202094706 + AluSq SINE Alu 1 346 0 196 260 83 42 chr3 15942467 15942563 -202094595 + L2 LINE L2 3109 3208 -64 2351 103 0 3 chr3 15943503 15943814 -202093344 + AluSx SINE Alu 1 310 -2 628 310 141 6 chr3 15945007 15945326 -202091832 + L2 LINE L2 2440 2801 -513 502 308 89 32 chr3 15945327 15945388 -202091770 + L2 LINE L2 2906 2962 -310 2347 63 13 7 chr3 15945388 15945688 -202091470 - AluY SINE Alu -9 302 1 502 308 89 32 chr3 15945688 15945973 -202091185 + L2 LINE L2 2962 3272 0 2228 57 0 11 chr3 15946245 15946528 -202090630 + AluY SINE Alu 1 280 -31 188 65 0 32 chr3 15946792 15946823 -202090335 + (GGA)n Simple_repeat Simple_repeat 1 30 0 328 170 0 0 chr3 15946913 15946966 -202090192 + MIR SINE MIR 204 256 -6 1886 155 30 3 chr3 15946981 15947278 -202089880 - AluJb SINE Alu -7 305 1 184 308 66 0 chr3 15947665 15947756 -202089402 + MIR SINE MIR 27 123 -139 1989 138 0 0 chr3 15947868 15948150 -202089008 - AluSx SINE Alu -10 302 21 2439 83 3 0 chr3 15950023 15950325 -202086833 - AluSq SINE Alu -10 303 1 310 267 86 26 chr3 15950847 15950963 -202086195 + L2 LINE L2 3145 3267 -5 254 275 38 12 chr3 15951071 15951151 -202086007 - MIR3 SINE MIR -22 186 105 2240 100 0 10 chr3 15951270 15951570 -202085588 - AluSx SINE Alu -15 297 1 202 216 0 0 chr3 15952608 15952645 -202084513 + GA-rich Low_complexity Low_complexity 2 38 0 201 345 43 7 chr3 15955971 15956110 -202081048 + L2 LINE L2 1806 1949 -1365 1989 134 20 0 chr3 15956188 15956480 -202080678 + AluSx SINE Alu 1 298 -14 499 350 68 23 chr3 15956620 15957149 -202080009 - L2 LINE L2 -622 2692 2140 2411 80 0 10 chr3 15957460 15957772 -202079386 - AluSc SINE Alu 0 309 1 523 251 41 23 chr3 15958272 15958443 -202078715 - L2 LINE L2 -15 3298 3125 1995 134 34 0 chr3 15958820 15959118 -202078040 - AluSx SINE Alu -4 308 1 1345 199 84 47 chr3 15959439 15959842 -202077316 - MER95 LTR ERV 0 431 14 974 206 76 129 chr3 15959879 15960484 -202076674 - L1ME3 LINE L1 -95 6067 5531 2309 99 0 3 chr3 15960484 15960796 -202076362 - AluSq SINE Alu -2 311 1 974 206 76 129 chr3 15960796 15960910 -202076248 - L1ME3 LINE L1 -631 5531 5412 1911 81 60 25 chr3 15961388 15961673 -202075485 - AluSx SINE Alu -7 305 11 2495 72 0 0 chr3 15962314 15962618 -202074540 - AluY SINE Alu -7 304 1 948 202 62 44 chr3 15962689 15962740 -202074418 - L1MA6 LINE L1 0 6300 6251 2320 106 3 3 chr3 15962740 15963051 -202074107 - AluSp SINE Alu -2 311 1 948 202 62 44 chr3 15963051 15963271 -202073887 - L1MA6 LINE L1 -49 6251 6024 2229 92 0 54 chr3 15963539 15963855 -202073303 - AluSq SINE Alu -12 301 3 330 26 0 0 chr3 15963899 15963938 -202073220 + (GA)n Simple_repeat Simple_repeat 1 39 0 * 396 0 0 0 chr3 15963937 15963981 -202073177 + (TG)n Simple_repeat Simple_repeat 2 45 0 355 264 80 25 chr3 15964023 15964186 -202072972 - MARNA DNA Mariner -345 241 70 1567 166 17 6 chr3 15965108 15965452 -202071706 - L1MB8 LINE L1 -1 6177 5765 276 340 10 10 chr3 15966992 15967092 -202070066 - MER5A DNA MER1_type -89 100 1 2109 125 14 3 chr3 15967144 15967441 -202069717 + AluJb SINE Alu 3 302 -10 1013 228 30 25 chr3 15967641 15967878 -202069280 - MER8 DNA MER2_type 0 239 2 4448 156 54 6 chr3 15969083 15970024 -202067134 + L1MB7 LINE L1 5193 6176 -8 690 274 49 10 chr3 15970890 15971094 -202066064 + MIR SINE MIR 7 218 -44 261 341 38 8 chr3 15973897 15974029 -202063129 + L2 LINE L2 2882 3017 -255 430 167 19 19 chr3 15974117 15974225 -202062933 + Charlie1 DNA MER1_type 2594 2701 -60 341 113 0 0 chr3 15974226 15974279 -202062879 - L1MB8 LINE L1 -5 6173 6121 254 186 0 0 chr3 15975289 15975332 -202061826 - L2 LINE L2 -6 3266 3224 1005 292 96 42 chr3 15975663 15976289 -202060869 + L1MC4 LINE L1 7382 8041 -1 216 311 38 45 chr3 15977136 15977268 -202059890 - MIR SINE MIR -119 143 13 300 301 0 11 chr3 15979617 15979641 -202057517 + CT-rich Low_complexity Low_complexity 1 24 -68 1762 191 42 26 chr3 15979641 15980023 -202057135 - MLT1B LTR MaLR 0 390 3 300 301 0 11 chr3 15980023 15980091 -202057067 + CT-rich Low_complexity Low_complexity 24 92 0 255 353 8 38 chr3 15980129 15980262 -202056896 + MIR SINE MIR 19 147 -61 2267 106 0 20 chr3 15981348 15981651 -202055507 + AluSq SINE Alu 12 308 -5 2065 119 54 0 chr3 15981857 15982151 -202055007 - AluSg SINE Alu 0 310 1 463 290 113 66 chr3 15982391 15982780 -202054378 - L1ME3 LINE L1 -196 5966 5548 1990 113 17 7 chr3 15983336 15983627 -202053531 - AluSx SINE Alu -18 294 1 1930 140 0 40 chr3 15983985 15984307 -202052851 + AluJb SINE Alu 1 309 -3 2296 105 0 7 chr3 15984354 15984658 -202052500 + AluSc SINE Alu 1 302 -7 271 341 0 0 chr3 15984954 15985045 -202052113 + MIR3 SINE MIR 104 194 -14 233 132 0 0 chr3 15985368 15985406 -202051752 - MIR SINE MIR -101 161 124 2596 61 0 6 chr3 15985637 15985950 -202051208 - AluY SINE Alu 0 311 1 480 242 16 23 chr3 15986216 15986344 -202050814 - MIR SINE MIR -128 134 8 203 244 0 171 chr3 15987141 15987264 -202049894 + MIR SINE MIR 119 220 -42 2571 70 0 0 chr3 15987639 15987940 -202049218 - AluY SINE Alu -10 301 1 576 296 17 17 chr3 15988062 15988234 -202048924 - MIR SINE MIR -75 187 16 465 283 82 6 chr3 15988950 15989109 -202048049 + MIR SINE MIR 12 182 -80 1735 159 0 88 chr3 15990567 15990907 -202046251 + AluJo SINE Alu 3 312 0 243 0 0 0 chr3 15991120 15991147 -202046011 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1866 144 22 0 chr3 15991149 15991419 -202045739 - AluSx SINE Alu -36 276 1 180 0 0 0 chr3 15991537 15991557 -202045601 + (T)n Simple_repeat Simple_repeat 1 20 0 2504 74 0 0 chr3 15991644 15991941 -202045217 - AluY SINE Alu -14 297 1 2001 150 0 7 chr3 15992196 15992496 -202044662 + AluJb SINE Alu 1 298 -14 526 276 90 57 chr3 15992545 15993092 -202044066 - L1M4 LINE L1 -1732 4414 3850 288 77 0 0 chr3 15993113 15993152 -202044006 + (TG)n Simple_repeat Simple_repeat 2 40 0 246 89 0 0 chr3 15993152 15993197 -202043961 + LTR66 LTR ERVL 394 438 -172 2106 127 21 0 chr3 15993203 15993486 -202043672 - AluSx SINE Alu -23 289 1 2432 81 0 3 chr3 15994636 15994934 -202042224 + AluSg SINE Alu 5 301 -9 2023 138 0 0 chr3 15996806 15997088 -202040070 + AluSx SINE Alu 21 302 -10 221 308 66 0 chr3 15997200 15997291 -202039867 - MIR SINE MIR -139 123 27 1916 155 30 3 chr3 15997678 15997975 -202039183 + AluJb SINE Alu 1 305 -7 350 268 0 12 chr3 15997990 15998072 -202039086 - MIR SINE MIR -6 256 176 188 65 0 32 chr3 15998133 15998164 -202038994 + (TCC)n Simple_repeat Simple_repeat 1 30 0 185 298 8 105 chr3 15998248 15998372 -202038786 - L2 LINE L2 0 3313 3202 1774 193 3 0 chr3 15998527 15998822 -202038336 + AluJb SINE Alu 1 296 -16 203 398 34 0 chr3 15998841 15998959 -202038199 + MIR SINE MIR 138 259 -3 362 311 107 6 chr3 16002804 16002981 -202034177 + MIR3 SINE MIR 11 205 -3 220 346 89 0 chr3 16002997 16003098 -202034060 + L2 LINE L2 2512 2621 -693 531 275 114 65 chr3 16003165 16003594 -202033564 + L2 LINE L2 2863 3312 -1 310 303 81 27 chr3 16003793 16004014 -202033144 - MIR SINE MIR -10 252 20 318 264 57 57 chr3 16004442 16004582 -202032576 + MIR SINE MIR 2 141 -67 1564 164 3 89 chr3 16004647 16004983 -202032175 + AluJb SINE Alu 2 308 -4 995 249 9 0 chr3 16005254 16005471 -202031687 - MIR SINE MIR -27 235 17 1644 235 68 45 chr3 16005954 16006525 -202030633 - L1ME1 LINE L1 -310 5856 5273 1230 169 0 41 chr3 16006525 16006744 -202030414 + AluJb SINE Alu 85 294 -18 1280 236 60 64 chr3 16006747 16007015 -202030143 - L1ME1 LINE L1 -873 5273 5006 2426 47 0 4 chr3 16007015 16007292 -202029866 - AluY SINE Alu -35 276 1 1280 236 60 64 chr3 16007292 16007556 -202029602 - L1ME1 LINE L1 -1140 5006 4743 1610 91 0 10 chr3 16009710 16009918 -202027240 + AluSx SINE Alu 1 206 -106 294 276 156 12 chr3 16010924 16011264 -202025894 - L2 LINE L2 -42 3230 2842 1654 145 20 4 chr3 16011983 16012238 -202024920 + AluJo SINE Alu 34 292 -20 2424 107 0 0 chr3 16012255 16012564 -202024594 - AluSx SINE Alu -3 309 1 260 238 36 24 chr3 16013299 16013383 -202023775 + MIR SINE MIR 65 149 -113 2114 143 31 151 chr3 16013437 16013942 -202023216 - L1M4 LINE L1 -370 5808 5244 1832 158 48 10 chr3 16013942 16014234 -202022924 - AluJb SINE Alu -7 305 3 2114 143 31 151 chr3 16014234 16014290 -202022868 - L1M4 LINE L1 -934 5244 5183 430 143 0 0 chr3 16014290 16014360 -202022798 - FLAM_C SINE Alu -2 141 72 2114 143 31 151 chr3 16014360 16014532 -202022626 - L1M4 LINE L1 -995 5183 5100 951 303 110 22 chr3 16014601 16015139 -202022019 - L1MC4a LINE L1 -1762 6046 5462 357 219 16 11 chr3 16015182 16015341 -202021817 - L1ME2 LINE L1 -15 6149 5879 969 188 119 8 chr3 16015344 16015605 -202021553 - L1MA9 LINE L1 -33 6279 5990 1761 245 92 6 chr3 16015614 16016360 -202020798 - L1ME2 LINE L1 -277 5887 5081 317 275 78 60 chr3 16016355 16016480 -202020678 - L1MC4a LINE L1 -747 5399 5278 * 1730 154 20 24 chr3 16016480 16016773 -202020385 - AluJb SINE Alu -3 309 18 317 275 78 60 chr3 16016773 16017159 -202019999 - L1MC4a LINE L1 -868 5278 4889 882 148 0 28 chr3 16017680 16017822 -202019336 - FLAM_C SINE Alu -5 138 1 2382 110 0 0 chr3 16017833 16018141 -202019017 - AluSx SINE Alu -4 308 1 332 270 101 14 chr3 16018330 16018478 -202018680 - L1ME LINE L1 -504 5617 5457 275 307 193 0 chr3 16019287 16019453 -202017705 + MIR SINE MIR 59 256 -6 201 158 0 0 chr3 16024000 16024038 -202013120 + A-rich Low_complexity Low_complexity 5 42 0 251 146 36 36 chr3 16024899 16024954 -202012204 + (CAGG)n Simple_repeat Simple_repeat 4 58 0 296 313 183 42 chr3 16026404 16026813 -202010345 + L3 LINE CR1 456 922 -655 248 330 84 0 chr3 16027739 16027833 -202009325 - MIR SINE MIR -55 153 50 2389 98 10 0 chr3 16027961 16028266 -202008892 - AluSx SINE Alu -4 308 1 225 347 33 33 chr3 16029538 16029688 -202007470 + L2 LINE L2 3118 3267 -5 206 250 181 43 chr3 16029735 16029851 -202007307 + L2 LINE L2 3141 3272 0 227 200 0 0 chr3 16030732 16030782 -202006376 + CT-rich Low_complexity Low_complexity 3 52 0 188 67 33 0 chr3 16032285 16032315 -202004843 + (CA)n Simple_repeat Simple_repeat 2 32 0 814 201 23 0 chr3 16032337 16032511 -202004647 - L1MD2 LINE L1 -31 6328 6151 998 173 6 0 chr3 16035805 16035961 -202001197 + AluJb SINE Alu 137 293 -19 286 236 14 0 chr3 16036007 16036079 -202001079 + L1MB4 LINE L1 6100 6172 -8 21 0 0 0 chr3 16036081 16036102 -202001056 + AT_rich Low_complexity Low_complexity 1 21 0 1849 142 60 0 chr3 16037471 16037753 -201999405 + AluJb SINE Alu 1 299 -13 1981 147 0 3 chr3 16037894 16038186 -201998972 + AluJo SINE Alu 1 291 -21 354 224 0 0 chr3 16038318 16038394 -201998764 - MIR SINE MIR -112 150 75 2160 100 7 0 chr3 16038955 16039384 -201997774 + AluSx SINE Alu 1 431 0 456 323 28 4 chr3 16039480 16039740 -201997418 - L1ME LINE L1 -567 5603 5341 1398 191 108 32 chr3 16039748 16040182 -201996976 + MLT1C LTR MaLR 1 467 0 1463 165 68 28 chr3 16040443 16040764 -201996394 + L1MA5A LINE L1 5957 6290 -7 477 0 0 0 chr3 16040771 16040824 -201996334 + (TG)n Simple_repeat Simple_repeat 2 54 0 229 298 32 48 chr3 16041045 16041169 -201995989 - MIR SINE MIR -55 153 32 2025 133 21 0 chr3 16043302 16043587 -201993571 + AluSx SINE Alu 1 291 -21 239 287 69 10 chr3 16043746 16043847 -201993311 - L3 LINE CR1 -195 1382 1276 28 29 0 0 chr3 16044583 16044618 -201992540 + AT_rich Low_complexity Low_complexity 1 35 0 2415 64 3 0 chr3 16044751 16045033 -201992125 - AluY SINE Alu -28 283 1 2686 157 104 4 chr3 16046006 16046534 -201990624 - L1MB3 LINE L1 0 6183 5603 2198 125 0 16 chr3 16047050 16047353 -201989805 - AluSx SINE Alu -14 298 1 257 273 40 61 chr3 16050188 16050485 -201986673 + L1M1 LINE L1 5282 5572 -728 234 218 64 39 chr3 16050643 16050721 -201986437 - MLT1K LTR MaLR 0 588 509 234 0 0 0 chr3 16050906 16050932 -201986226 + (CCA)n Simple_repeat Simple_repeat 2 27 0 2261 103 10 3 chr3 16051136 16051436 -201985722 + AluSx SINE Alu 1 302 -10 239 304 65 36 chr3 16054698 16054836 -201982322 - MIR SINE MIR -57 205 64 21 0 0 0 chr3 16054866 16054887 -201982271 + AT_rich Low_complexity Low_complexity 1 21 0 2194 120 40 0 chr3 16054893 16055193 -201981965 + AluSx SINE Alu 1 312 0 192 196 0 89 chr3 16055402 16055458 -201981700 + L2 LINE L2 3262 3312 -1 27 62 0 0 chr3 16055547 16055595 -201981563 + AT_rich Low_complexity Low_complexity 1 48 0 2761 16 0 23 chr3 16055626 16055936 -201981222 + AluYb8 SINE Alu 1 303 -15 2395 105 0 0 chr3 16056009 16056313 -201980845 + AluSx SINE Alu 3 306 -6 659 167 125 0 chr3 16056714 16056858 -201980300 + MER5B DNA MER1_type 17 178 0 655 229 177 19 chr3 16057161 16057432 -201979726 + MER5C DNA MER1_type 1 314 -10 1249 170 8 13 chr3 16057750 16057985 -201979173 - MER46A DNA MER2_type 0 236 3 219 259 19 0 chr3 16058072 16058126 -201979032 + L2 LINE L2 3254 3308 -5 320 322 8 16 chr3 16058326 16058447 -201978711 + L1ME4a LINE L1 4549 4668 -1478 582 248 93 90 chr3 16058993 16059729 -201977429 + L1ME4a LINE L1 5282 6024 -97 522 0 0 0 chr3 16060213 16060271 -201976887 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 1681 157 46 29 chr3 16060271 16060552 -201976606 - AluJb SINE Alu -26 286 1 291 28 0 0 chr3 16061036 16061072 -201976086 + (CA)n Simple_repeat Simple_repeat 2 37 0 2085 133 36 0 chr3 16061383 16061684 -201975474 + AluSx SINE Alu 1 312 0 23 0 0 0 chr3 16062546 16062569 -201974589 + AT_rich Low_complexity Low_complexity 1 23 0 2185 98 0 3 chr3 16062733 16063018 -201974140 - AluSx SINE Alu -8 304 21 1712 278 67 10 chr3 16063595 16064178 -201972980 - L1ME3A LINE L1 -146 6024 5409 787 170 90 66 chr3 16064258 16064470 -201972688 + MER20 DNA MER1_type 1 217 -2 235 343 0 0 chr3 16065403 16065470 -201971688 + MER5B DNA MER1_type 2 68 -110 345 269 21 11 chr3 16066185 16066278 -201970880 + L2 LINE L2 3179 3272 0 240 365 52 9 chr3 16067380 16067495 -201969663 + MIR SINE MIR 16 135 -73 1931 156 0 10 chr3 16068238 16068545 -201968613 - AluJo SINE Alu -8 304 1 1529 157 6 80 chr3 16069317 16069641 -201967517 - pTR5 LTR ERV1 -860 1578 1279 284 307 193 0 chr3 16071527 16071693 -201965465 - MIR SINE MIR -6 256 59 350 270 101 14 chr3 16072502 16072650 -201964508 + L1ME LINE L1 5457 5617 -504 2216 110 0 0 chr3 16072839 16073147 -201964011 + AluSx SINE Alu 1 308 -4 809 148 0 28 chr3 16073158 16073300 -201963858 + FLAM_C SINE Alu 1 138 -5 338 264 83 70 chr3 16073821 16074207 -201962951 + L1MC4a LINE L1 4889 5286 -883 1601 151 21 14 chr3 16074207 16074486 -201962672 + AluJb SINE Alu 18 298 -14 338 264 83 70 chr3 16074486 16074625 -201962533 + L1MC4a LINE L1 5286 5422 -747 * 1873 245 91 6 chr3 16074620 16075370 -201961788 + L1ME2 LINE L1 5081 5891 -273 1024 184 116 15 chr3 16075369 16075636 -201961522 + L1MA9 LINE L1 5986 6279 -33 * 378 202 23 41 chr3 16075634 16075798 -201961360 + L1ME2 LINE L1 5870 6149 -15 * 1022 303 110 22 chr3 16075841 16076379 -201960779 + L1MC4a LINE L1 5462 6046 -1762 2215 145 31 151 chr3 16076448 16076620 -201960538 + L1M4 LINE L1 5100 5291 -887 420 114 0 29 chr3 16076620 16076690 -201960468 + FLAM_C SINE Alu 72 139 -4 2215 145 31 151 chr3 16076690 16076746 -201960412 + L1M4 LINE L1 5291 5352 -826 1629 164 48 10 chr3 16076746 16077038 -201960120 + AluJb SINE Alu 3 305 -7 2215 145 31 151 chr3 16077038 16077543 -201959615 + L1M4 LINE L1 5352 5808 -370 258 238 36 24 chr3 16077597 16077681 -201959477 - MIR SINE MIR -113 149 65 2181 97 3 0 chr3 16078416 16078714 -201958444 + AluSx SINE Alu 1 299 -13 24 0 0 0 chr3 16078942 16078966 -201958192 + AT_rich Low_complexity Low_complexity 1 24 0 1624 175 0 7 chr3 16079443 16079734 -201957424 + AluJo SINE Alu 1 289 -23 1867 136 7 10 chr3 16079908 16080203 -201956955 + AluSx SINE Alu 1 294 -18 1980 182 75 27 chr3 16080376 16080816 -201956342 - LOR1b LTR ERV1 0 461 1 972 226 16 41 chr3 16081122 16081365 -201955793 - L1MC4 LINE L1 -1055 6987 6751 926 173 113 16 chr3 16081429 16081614 -201955544 - MER3 DNA MER1_type -6 203 1 1254 274 139 52 chr3 16081615 16082243 -201954915 - L1MC4a LINE L1 -1158 6650 6078 6453 26 4 0 chr3 16082243 16082981 -201954177 - L1PA3 LINE L1 -3 6152 5412 1254 274 139 52 chr3 16082981 16083043 -201954115 - L1MC4a LINE L1 -1730 6078 6023 2211 82 3 0 chr3 16083043 16083357 -201953801 - AluSp SINE Alu 0 313 1 1254 274 139 52 chr3 16083357 16083632 -201953526 - L1MC4a LINE L1 -1785 6023 5600 324 244 16 81 chr3 16083758 16083881 -201953277 - MIR SINE MIR -10 252 138 182 273 0 18 chr3 16084099 16084154 -201953004 + L2 LINE L2 3256 3309 -4 189 0 0 0 chr3 16084644 16084665 -201952493 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 785 274 79 8 chr3 16085327 16085568 -201951590 - MIR SINE MIR -2 260 3 432 0 0 0 chr3 16087525 16087573 -201949585 + (CA)n Simple_repeat Simple_repeat 2 49 0 237 253 138 0 chr3 16088173 16088260 -201948898 - MER103 DNA DNA -65 101 3 1425 232 41 19 chr3 16088262 16088628 -201948530 + MLT1A2 LTR MaLR 1 374 0 384 309 79 0 chr3 16089919 16090071 -201947087 + L2 LINE L2 3104 3267 -5 1551 154 98 31 chr3 16091472 16091790 -201945368 + MER2 DNA MER2_type 1 339 -6 449 250 7 37 chr3 16091903 16092039 -201945119 - L1MC4 LINE L1 0 8042 7911 319 183 0 0 chr3 16092851 16092911 -201944247 - L1ME3 LINE L1 -58 6104 6045 784 129 187 0 chr3 16092911 16093050 -201944108 - FRAM SINE Alu -14 162 1 691 229 56 19 chr3 16093155 16093369 -201943789 - L1ME3 LINE L1 -127 6035 5814 352 200 0 0 chr3 16093379 16093454 -201943704 - L1ME3 LINE L1 -1597 4549 4475 2095 89 3 10 chr3 16093561 16093863 -201943295 - AluSx SINE Alu -12 300 1 641 256 118 13 chr3 16094068 16094306 -201942852 - L1MC4a LINE L1 -1814 5994 5732 343 106 0 0 chr3 16094325 16094372 -201942786 + MER4E LTR ERV1 651 697 -69 213 109 0 55 chr3 16094372 16094427 -201942731 + (TA)n Simple_repeat Simple_repeat 2 53 0 2514 240 56 32 chr3 16094972 16095852 -201941306 - L1ME3 LINE L1 -1744 4402 3502 628 179 154 38 chr3 16095853 16096093 -201941065 - AluJo SINE Alu -7 305 38 226 340 30 10 chr3 16096307 16096407 -201940751 - L2 LINE L2 -561 2753 2652 308 222 33 33 chr3 16096825 16096916 -201940242 - MIR3 SINE MIR -47 161 70 2394 65 0 3 chr3 16096923 16097231 -201939927 + AluY SINE Alu 1 307 -4 216 236 6 35 chr3 16097340 16097398 -201939760 - MIR SINE MIR -61 147 95 190 279 132 0 chr3 16098275 16098343 -201938815 - MIR3 SINE MIR -54 154 78 407 228 177 32 chr3 16098358 16098516 -201938642 + MIR SINE MIR 20 200 -62 844 201 0 0 chr3 16098723 16098896 -201938262 - AluJb SINE Alu 0 306 134 496 91 0 0 chr3 16098911 16098977 -201938181 + L1MA3 LINE L1 6195 6260 -45 * 2038 96 0 51 chr3 16098977 16099291 -201937867 + AluSx SINE Alu 1 298 -14 835 260 109 30 chr3 16099291 16099615 -201937543 - L1MC4a LINE L1 -1856 5952 5600 * 1159 223 8 0 chr3 16099614 16099874 -201937284 + L1MB5 LINE L1 4915 5176 -970 24 0 0 0 chr3 16099890 16099914 -201937244 + AT_rich Low_complexity Low_complexity 1 24 0 2285 84 0 0 chr3 16099936 16100232 -201936926 - AluSg SINE Alu -14 296 1 2341 202 42 8 chr3 16100248 16100748 -201936410 + L1MB5 LINE L1 5491 6007 -167 616 231 42 7 chr3 16100758 16100901 -201936257 - L1MC4a LINE L1 -2191 5617 5470 21 57 0 0 chr3 16103481 16103516 -201933642 + AT_rich Low_complexity Low_complexity 1 35 0 1083 139 0 0 chr3 16103912 16104077 -201933081 - AluSg/x SINE Alu -10 302 138 1938 103 30 30 chr3 16104532 16104833 -201932325 + AluSg SINE Alu 1 301 -9 204 333 19 0 chr3 16105196 16105250 -201931908 - L2 LINE L2 -13 3259 3205 363 297 103 7 chr3 16105457 16105612 -201931546 + MIR SINE MIR 20 189 -73 303 156 0 0 chr3 16105640 16105685 -201931473 - MER47A DNA MER2_type 0 366 322 803 117 17 0 chr3 16105688 16105808 -201931350 - AluSg/x SINE Alu -12 298 177 1079 116 29 6 chr3 16105811 16105983 -201931175 - MER47A DNA MER2_type -121 245 70 2026 102 3 14 chr3 16106201 16106494 -201930664 + AluSp SINE Alu 1 290 -23 934 186 72 0 chr3 16106513 16106706 -201930452 + AluJo SINE Alu 82 288 -24 1120 223 60 45 chr3 16106826 16107094 -201930064 + L1MEc LINE L1 745 1023 -5373 2083 101 0 0 chr3 16107094 16107391 -201929767 + AluSq SINE Alu 6 302 0 1120 223 60 45 chr3 16107391 16107503 -201929655 + L1MEc LINE L1 1023 1132 -5264 296 247 103 41 chr3 16109162 16109259 -201927899 - MIR SINE MIR -78 184 82 273 136 0 0 chr3 16109655 16109699 -201927459 - Charlie4 DNA MER1_type -54 1907 1864 2011 107 0 21 chr3 16110137 16110426 -201926732 + AluSx SINE Alu 1 283 -29 617 138 147 17 chr3 16110961 16111077 -201926081 - FLAM_C SINE Alu -2 131 1 1927 114 35 7 chr3 16111429 16111718 -201925440 + AluSx SINE Alu 1 297 -15 1884 116 40 7 chr3 16112369 16112671 -201924487 + AluSx SINE Alu 1 312 0 231 61 0 0 chr3 16112774 16112807 -201924351 + (T)n Simple_repeat Simple_repeat 1 33 0 754 145 0 0 chr3 16112897 16113014 -201924144 + FLAM_C SINE Alu 1 117 -16 2441 131 59 5 chr3 16113056 16113461 -201923697 + Tigger3(Golem) DNA MER2_type 2603 3029 0 372 266 60 96 chr3 16113753 16113952 -201923206 - MIR3 SINE MIR -10 198 7 896 9 0 0 chr3 16114284 16114389 -201922769 - AluYa5/8 SINE Alu -2 308 204 316 263 54 46 chr3 16114455 16114647 -201922511 - MLT1J1 LTR MaLR -7 443 243 * 485 252 19 0 chr3 16114642 16114749 -201922409 - MLT1J1 LTR MaLR -337 109 1 714 284 42 21 chr3 16115971 16116210 -201920948 - MIR SINE MIR -2 260 17 330 329 21 14 chr3 16116232 16116372 -201920786 + MIR3 SINE MIR 14 154 -54 1757 147 3 7 chr3 16116421 16116707 -201920451 + AluJb SINE Alu 1 285 -27 827 195 0 12 chr3 16116740 16116909 -201920249 + L1MB7 LINE L1 6007 6173 -11 245 320 80 0 chr3 16117079 16117179 -201919979 + L2 LINE L2 3206 3313 0 302 277 98 27 chr3 16117218 16117330 -201919828 + L2 LINE L2 3151 3270 -2 248 196 0 20 chr3 16117410 16117461 -201919697 - LTR67 LTR ERVL 0 557 508 330 85 73 73 chr3 16118295 16118377 -201918781 + Alu SINE Alu 220 301 0 2171 85 0 0 chr3 16118936 16119194 -201917964 - AluSq SINE Alu -29 284 27 363 273 91 15 chr3 16119229 16119419 -201917739 + MIR SINE MIR 37 239 -23 180 0 0 0 chr3 16119642 16119662 -201917496 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2284 94 0 10 chr3 16120107 16120406 -201916752 + AluSq SINE Alu 1 296 -17 1613 158 52 7 chr3 16120543 16120815 -201916343 + AluJb SINE Alu 27 310 -2 402 303 148 0 chr3 16121042 16121204 -201915954 + MIR SINE MIR 2 187 -75 1258 186 104 13 chr3 16121614 16121943 -201915215 - MER93a LTR ERV1 0 402 1 266 224 122 31 chr3 16121960 16122058 -201915100 - MARNA DNA Mariner -236 350 244 24 0 0 0 chr3 16123449 16123473 -201913685 + AT_rich Low_complexity Low_complexity 1 24 0 1374 157 4 30 chr3 16123780 16124015 -201913143 + AluJo SINE Alu 1 229 -83 1755 141 74 0 chr3 16124219 16124488 -201912670 + AluJo SINE Alu 1 289 -23 2284 104 17 0 chr3 16124987 16125285 -201911873 + AluSx SINE Alu 1 303 -9 888 211 6 0 chr3 16125300 16125466 -201911692 + AluJb SINE Alu 137 303 -9 389 206 0 41 chr3 16125567 16125664 -201911494 - L1MB8 LINE L1 -1 6177 6085 1629 173 0 0 chr3 16125793 16126042 -201911116 + AluJb SINE Alu 1 249 -63 2289 68 7 10 chr3 16126393 16126688 -201910470 + AluY SINE Alu 1 294 -17 282 95 0 0 chr3 16126697 16126739 -201910419 + (TG)n Simple_repeat Simple_repeat 1 42 0 459 212 34 25 chr3 16127505 16127623 -201909535 + MIR SINE MIR 61 179 -83 373 243 195 38 chr3 16128006 16128191 -201908967 + MIR SINE MIR 49 262 0 350 315 139 14 chr3 16128938 16129154 -201908004 + MIR SINE MIR 13 255 -7 322 282 67 26 chr3 16129175 16129370 -201907788 + MIR SINE MIR 59 261 -1 345 321 28 0 chr3 16129417 16129526 -201907632 + L2 LINE L2 3126 3237 -35 874 139 16 0 chr3 16129784 16129913 -201907245 + FLAM_C SINE Alu 1 131 -12 374 181 79 0 chr3 16130597 16130695 -201906463 + MLT1C LTR MaLR 52 169 -221 235 71 0 125 chr3 16130695 16130751 -201906407 + L1MA4 LINE L1 6241 6289 -11 1316 195 30 34 chr3 16130769 16131067 -201906091 + MLT1C LTR MaLR 171 467 0 390 296 46 7 chr3 16132036 16132188 -201904970 + MIR SINE MIR 98 255 -7 273 314 0 0 chr3 16132268 16132338 -201904820 - L2 LINE L2 -15 3298 3229 230 267 128 0 chr3 16132407 16132493 -201904665 + L2 LINE L2 3217 3313 0 995 180 0 11 chr3 16133529 16133707 -201903451 - FRAM SINE Alu -8 168 1 2058 150 3 0 chr3 16133865 16134172 -201902986 - AluSx SINE Alu -4 308 1 827 136 0 0 chr3 16135766 16135884 -201901274 - 5S rRNA rRNA -1 120 3 259 263 127 25 chr3 16136089 16136207 -201900951 + L1P LINE L1 4883 5012 -1134 1919 168 0 0 chr3 16136242 16136534 -201900624 - AluJb SINE Alu -15 297 6 239 196 0 36 chr3 16137087 16137143 -201900015 + L2 LINE L2 3234 3287 -26 21 0 0 0 chr3 16137714 16137735 -201899423 + AT_rich Low_complexity Low_complexity 1 21 0 591 108 0 0 chr3 16138017 16138100 -201899058 + AluSx SINE Alu 2 84 -229 253 286 214 0 chr3 16138198 16138324 -201898834 - MIR SINE MIR -109 153 1 301 326 299 2 chr3 16138667 16139143 -201898015 - L2 LINE L2 -23 3290 2657 1449 153 0 26 chr3 16139401 16139629 -201897529 + AluSx SINE Alu 62 283 -29 264 283 57 38 chr3 16140089 16140248 -201896910 + MIR SINE MIR 66 227 -35 186 167 0 0 chr3 16140909 16140945 -201896213 + (TCCA)n Simple_repeat Simple_repeat 2 37 0 456 86 129 0 chr3 16141040 16141133 -201896025 - Tigger7 DNA MER2_type -142 2345 2241 2483 72 13 0 chr3 16141142 16141449 -201895709 - AluY SINE Alu 0 311 1 1483 162 8 0 chr3 16141451 16141686 -201895472 - AluSg SINE Alu -15 295 59 1131 157 68 36 chr3 16142211 16142460 -201894698 - AluJo SINE Alu -55 257 1 1548 150 83 90 chr3 16142507 16142680 -201894478 + L1MB7 LINE L1 5736 5909 -275 1716 195 26 3 chr3 16142680 16143019 -201894139 - MER7A DNA MER2_type 0 346 2 1548 150 83 90 chr3 16143019 16143132 -201894026 + L1MB7 LINE L1 5909 6021 -163 2267 158 41 14 chr3 16143132 16143550 -201893608 + MSTB1 LTR MaLR 4 432 0 1548 150 83 90 chr3 16143550 16143695 -201893463 + L1MB7 LINE L1 6021 6165 -19 1416 164 12 12 chr3 16143890 16144134 -201893024 + AluJo SINE Alu 50 293 -19 2255 112 0 10 chr3 16144140 16144445 -201892713 - AluSg SINE Alu -8 302 1 25 0 0 0 chr3 16144454 16144479 -201892679 + AT_rich Low_complexity Low_complexity 1 25 0 1967 154 3 3 chr3 16144679 16144978 -201892180 - AluSx SINE Alu -13 299 1 189 107 0 0 chr3 16145329 16145357 -201891801 + (GGGGA)n Simple_repeat Simple_repeat 1 28 0 670 238 14 7 chr3 16146009 16146156 -201891002 - FAM SINE Alu -37 148 1 297 0 0 0 chr3 16148169 16148202 -201888956 + (TG)n Simple_repeat Simple_repeat 2 34 0 1815 142 39 3 chr3 16148214 16148496 -201888662 - AluSx SINE Alu -20 292 1 433 232 56 21 chr3 16149479 16149621 -201887537 - AluSg/x SINE Alu -32 278 132 523 267 9 37 chr3 16150029 16150213 -201886945 + L1ME2 LINE L1 5984 6166 0 234 0 0 0 chr3 16150446 16150472 -201886686 + (CCA)n Simple_repeat Simple_repeat 2 27 0 2129 127 10 0 chr3 16150676 16150968 -201886190 + AluSx SINE Alu 1 295 -17 186 43 0 0 chr3 16150968 16150991 -201886167 + (GA)n Simple_repeat Simple_repeat 2 24 0 479 243 7 37 chr3 16151719 16151855 -201885303 + L1MC4 LINE L1 7911 8042 0 1595 148 98 31 chr3 16151968 16152286 -201884872 - MER2 DNA MER2_type -6 339 1 322 309 79 0 chr3 16153687 16153839 -201883319 - L2 LINE L2 -5 3267 3104 1412 232 41 19 chr3 16155130 16155496 -201881662 - MLT1A2 LTR MaLR 0 374 1 233 253 138 0 chr3 16155498 16155585 -201881573 + MER103 DNA DNA 3 101 -65 432 0 0 0 chr3 16156185 16156233 -201880925 + (TG)n Simple_repeat Simple_repeat 2 49 0 672 267 80 9 chr3 16158190 16158415 -201878743 + MIR SINE MIR 3 243 -19 189 0 0 0 chr3 16159093 16159114 -201878044 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 291 250 12 0 chr3 16159920 16160000 -201877158 + MIR SINE MIR 172 252 -10 1210 268 148 54 chr3 16160187 16160401 -201876757 + L1MC4a LINE L1 5660 5853 -1955 2339 82 3 0 chr3 16160401 16160715 -201876443 + AluSp SINE Alu 1 313 0 1210 268 148 54 chr3 16160715 16160777 -201876381 + L1MC4a LINE L1 5853 5908 -1900 6470 26 4 0 chr3 16160777 16161515 -201875643 + L1PA3 LINE L1 5412 6152 -3 1210 268 148 54 chr3 16161515 16162143 -201875015 + L1MC4a LINE L1 5908 6650 -1158 928 173 113 16 chr3 16162144 16162329 -201874829 + MER3 DNA MER1_type 1 203 -6 1119 221 111 47 chr3 16162393 16162737 -201874421 + L1MC4 LINE L1 6751 7116 -926 1980 182 75 27 chr3 16162940 16163380 -201873778 + LOR1b LTR ERV1 1 461 0 1986 136 7 10 chr3 16163553 16163848 -201873310 - AluSx SINE Alu -18 294 1 1738 175 0 7 chr3 16164022 16164313 -201872845 - AluJo SINE Alu -23 289 1 24 0 0 0 chr3 16164790 16164814 -201872344 + AT_rich Low_complexity Low_complexity 1 24 0 2120 113 3 10 chr3 16165042 16165343 -201871815 - AluSx SINE Alu -13 299 1 246 242 263 0 chr3 16165402 16165501 -201871657 - MIR SINE MIR -19 243 119 448 259 28 99 chr3 16165644 16165856 -201871302 - MIR SINE MIR -33 229 33 283 237 32 43 chr3 16166691 16166784 -201870374 - MIR SINE MIR -61 147 56 274 318 81 14 chr3 16169747 16169895 -201867263 - MIR3 SINE MIR -7 201 44 429 257 64 47 chr3 16170133 16170304 -201866854 + MIR3 SINE MIR 33 206 -2 1135 180 81 25 chr3 16171375 16171495 -201865663 + L1MB8 LINE L1 5258 5370 -814 2220 116 48 22 chr3 16171495 16171850 -201865308 - THE1B LTR MaLR 0 364 1 1135 180 81 25 chr3 16171850 16172013 -201865145 + L1MB8 LINE L1 5370 5557 -627 1690 111 6 102 chr3 16172016 16172331 -201864827 + LTR12 LTR ERV1 1 285 -429 316 234 64 0 chr3 16172332 16172426 -201864732 + LTR30 LTR ERV1 553 652 -70 768 71 0 0 chr3 16172426 16172524 -201864634 + LTR12 LTR ERV1 617 714 0 2881 185 27 12 chr3 16172536 16173132 -201864026 + L1MB8 LINE L1 5569 6173 -5 370 256 68 8 chr3 16174205 16174338 -201862820 + MER104 DNA Tc2 1 141 -39 1970 111 0 20 chr3 16174391 16174689 -201862469 - AluSx SINE Alu -20 292 1 343 351 8 23 chr3 16176446 16176577 -201860581 - MIR SINE MIR -61 147 19 242 266 0 16 chr3 16176615 16176679 -201860479 + GA-rich Low_complexity Low_complexity 1 63 0 1459 227 45 29 chr3 16176683 16177062 -201860096 + MLT1B LTR MaLR 3 387 -3 208 330 22 22 chr3 16177799 16177890 -201859268 - L2 LINE L2 -45 3227 3137 219 390 34 0 chr3 16180304 16180422 -201856736 - MIR SINE MIR -3 259 138 1627 193 3 0 chr3 16180441 16180736 -201856422 - AluJb SINE Alu -16 296 1 183 298 8 105 chr3 16180891 16181015 -201856143 + L2 LINE L2 3202 3313 0 188 65 0 32 chr3 16181099 16181130 -201856028 + (GGA)n Simple_repeat Simple_repeat 1 30 0 350 268 0 12 chr3 16181191 16181273 -201855885 + MIR SINE MIR 176 256 -6 1777 154 30 3 chr3 16181288 16181586 -201855572 - AluJb SINE Alu -6 306 1 207 319 66 0 chr3 16181973 16182064 -201855094 + MIR SINE MIR 27 123 -139 1879 138 0 0 chr3 16182176 16182458 -201854700 - AluSx SINE Alu -10 302 21 2270 81 0 3 chr3 16184330 16184626 -201852532 - AluSg SINE Alu -11 299 5 1966 127 21 0 chr3 16185776 16186059 -201851099 + AluSx SINE Alu 1 289 -23 252 89 0 0 chr3 16186065 16186110 -201851048 - LTR66 LTR ERVL -172 438 394 234 91 0 0 chr3 16186110 16186143 -201851015 + (CA)n Simple_repeat Simple_repeat 2 34 0 623 260 101 56 chr3 16186195 16186711 -201850447 + L1M4 LINE L1 3876 4414 -1732 1855 150 0 7 chr3 16186760 16187060 -201850098 - AluJb SINE Alu -14 298 1 2165 104 0 0 chr3 16187315 16187613 -201849545 + AluSx SINE Alu 1 298 -14 189 0 0 0 chr3 16187700 16187721 -201849437 + (A)n Simple_repeat Simple_repeat 1 21 0 1735 144 22 0 chr3 16187839 16188109 -201849049 + AluSx SINE Alu 1 276 -36 279 0 0 0 chr3 16188111 16188142 -201849016 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1564 158 0 90 chr3 16188360 16188695 -201848463 - AluJo SINE Alu -5 307 3 447 275 70 7 chr3 16190153 16190295 -201846863 - MIR SINE MIR -80 182 32 569 296 17 17 chr3 16191028 16191200 -201845958 + MIR SINE MIR 16 187 -75 2432 70 0 0 chr3 16191322 16191624 -201845534 + AluY SINE Alu 1 302 -9 182 252 0 171 chr3 16191999 16192122 -201845036 - MIR SINE MIR -42 220 119 181 191 32 117 chr3 16192746 16192840 -201844318 - MIR SINE MIR -67 195 110 470 242 16 23 chr3 16192919 16193047 -201844111 + MIR SINE MIR 8 134 -128 2440 61 0 6 chr3 16193313 16193625 -201843533 + AluY SINE Alu 1 310 -1 234 132 0 0 chr3 16193848 16193886 -201843272 + MIR SINE MIR 124 161 -101 268 341 0 0 chr3 16194209 16194300 -201842858 - MIR3 SINE MIR -14 194 104 2144 105 0 7 chr3 16194596 16194900 -201842258 - AluSc SINE Alu -7 302 1 271 327 82 64 chr3 16195367 16195697 -201841461 + L2 LINE L2 2859 3194 -78 394 167 83 0 chr3 16195701 16195785 -201841373 - L1MC1 LINE L1 -293 6040 5950 1235 120 5 0 chr3 16195795 16195979 -201841179 - AluSg/x SINE Alu 0 312 128 3178 116 66 51 chr3 16195980 16196072 -201841086 - L1MC1 LINE L1 -378 5955 5866 1965 137 0 0 chr3 16196072 16196364 -201840794 - AluSx SINE Alu -20 292 1 3178 116 66 51 chr3 16196364 16196818 -201840340 - L1MC1 LINE L1 -467 5866 5397 1172 22 0 0 chr3 16196818 16196956 -201840202 - L1PA4 LINE L1 -3 6152 6015 3178 116 66 51 chr3 16196956 16197011 -201840147 - L1MC1 LINE L1 -936 5397 5344 208 314 0 0 chr3 16197036 16197087 -201840071 + L2 LINE L2 3246 3296 -17 21 36 0 0 chr3 16197110 16197138 -201840020 + AT_rich Low_complexity Low_complexity 1 28 0 1672 97 0 0 chr3 16197622 16197848 -201839310 + AluSx SINE Alu 62 287 -25 210 143 0 0 chr3 16197849 16197884 -201839274 + (CA)n Simple_repeat Simple_repeat 2 36 0 2184 104 0 0 chr3 16198038 16198336 -201838822 + AluSg SINE Alu 1 298 -12 540 305 56 19 chr3 16198889 16199102 -201838056 + MIR SINE MIR 1 221 -41 549 196 0 83 chr3 16199104 16199237 -201837921 + AluJb SINE Alu 103 224 -88 184 185 0 0 chr3 16199278 16199305 -201837853 + L2 LINE L2 3262 3288 -25 5008 117 51 73 chr3 16199369 16200382 -201836776 + pTR5 LTR ERV1 743 2025 -413 350 224 31 20 chr3 16200382 16200480 -201836678 + LTR30 LTR ERV1 544 642 -80 3578 142 264 23 chr3 16200483 16202302 -201834856 + pTR5 LTR ERV1 172 2606 0 1301 180 43 29 chr3 16204426 16204704 -201832454 + AluJo SINE Alu 1 282 -30 1321 71 157 0 chr3 16204736 16204933 -201832225 - MER30 DNA MER1_type 0 230 3 239 167 51 90 chr3 16205117 16205195 -201831963 + MLT1L LTR MaLR 1 75 -540 471 284 108 56 chr3 16205231 16205455 -201831703 + MLT1J LTR MaLR 75 323 -188 1507 196 50 79 chr3 16205455 16205877 -201831281 + Charlie4a DNA MER1_type 3 409 -1552 2095 113 0 3 chr3 16205877 16206178 -201830980 - AluSx SINE Alu -12 300 1 1507 196 50 79 chr3 16206178 16206275 -201830883 + Charlie4a DNA MER1_type 409 507 -1 471 284 108 56 chr3 16206275 16206374 -201830784 + MLT1J LTR MaLR 323 415 -96 228 167 0 0 chr3 16206374 16206410 -201830748 + MER3 DNA MER1_type 1 36 -173 1746 122 0 45 chr3 16206413 16206699 -201830459 - AluSx SINE Alu -8 304 32 802 200 82 0 chr3 16206733 16206903 -201830255 + MER3 DNA MER1_type 26 209 0 307 246 79 26 chr3 16206903 16207001 -201830157 + MLT1J LTR MaLR 408 511 0 193 250 31 47 chr3 16207865 16207929 -201829229 + L2 LINE L2 2948 3010 -262 5239 257 83 52 chr3 16207990 16209387 -201827771 - HAL1 LINE L1 -13 2494 1142 2347 76 3 0 chr3 16209387 16209690 -201827468 - AluSg SINE Alu -6 304 1 5239 257 83 52 chr3 16209690 16210495 -201826663 - HAL1 LINE L1 -1365 1142 212 3953 18 0 0 chr3 16210495 16210942 -201826216 + L1PA3 LINE L1 5708 6154 -1 5239 257 83 52 chr3 16210942 16211094 -201826064 - HAL1 LINE L1 -2295 212 66 224 219 0 0 chr3 16211108 16211149 -201826009 + (TATG)n Simple_repeat Simple_repeat 4 44 0 2092 82 4 0 chr3 16211195 16211474 -201825684 + AluSx SINE Alu 14 293 -19 284 319 0 0 chr3 16211474 16211565 -201825593 - L1MC4 LINE L1 -164 7878 7788 * 306 250 11 89 chr3 16211534 16211714 -201825444 - L1MC4 LINE L1 -48 7812 7595 202 310 17 0 chr3 16211791 16211849 -201825309 - MIR SINE MIR 0 262 204 1756 170 7 0 chr3 16211917 16212211 -201824947 - AluJb SINE Alu -16 296 1 1849 101 61 7 chr3 16212260 16212538 -201824620 + AluSc SINE Alu 6 298 -11 365 375 7 0 chr3 16213035 16213179 -201823979 - L3 LINE CR1 -1 1576 1432 2628 186 43 36 chr3 16213339 16213410 -201823748 + MER119 DNA MER1_type 1 70 -513 2260 97 0 3 chr3 16213410 16213721 -201823437 - AluSq SINE Alu -3 310 1 2628 186 43 36 chr3 16213721 16214225 -201822933 + MER119 DNA MER1_type 70 580 -3 182 344 16 16 chr3 16214599 16214721 -201822437 - L2 LINE L2 -569 2745 2624 239 95 48 0 chr3 16214998 16215040 -201822118 + (TATG)n Simple_repeat Simple_repeat 1 44 0 1914 116 41 3 chr3 16215624 16215788 -201821370 - AluSx SINE Alu -8 304 123 333 0 0 0 chr3 16215788 16215825 -201821333 + (TA)n Simple_repeat Simple_repeat 2 38 0 1914 116 41 3 chr3 16215825 16215953 -201821205 - AluSx SINE Alu -189 123 1 2009 87 33 0 chr3 16216032 16216336 -201820822 + AluSx SINE Alu 1 313 0 212 158 0 26 chr3 16216741 16216779 -201820379 + GA-rich Low_complexity Low_complexity 4 40 0 283 250 23 57 chr3 16217107 16217195 -201819963 + MIR SINE MIR 99 183 -79 447 285 63 105 chr3 16218042 16218094 -201819064 - L3 LINE CR1 -5 1572 1519 2368 81 0 20 chr3 16218094 16218392 -201818766 - AluSg SINE Alu -18 292 1 447 285 63 105 chr3 16218392 16218664 -201818494 - L3 LINE CR1 -58 1519 1268 3321 102 37 6 chr3 16218664 16219146 -201818012 + LOR1a LTR ERV1 1 497 0 447 285 63 105 chr3 16219146 16219250 -201817908 - L3 LINE CR1 -309 1268 1161 2136 189 173 94 chr3 16219587 16220554 -201816604 + LTR28 LTR ERV1 8 983 -37 752 196 20 33 chr3 16220538 16220691 -201816467 + LTR28 LTR ERV1 865 1015 -5 * 29843 44 36 20 chr3 16220693 16224515 -201812643 + L1P LINE L1 1 3881 -2265 1846 158 37 27 chr3 16224888 16225373 -201811785 + SVA Other Other 393 741 -782 1100 291 96 42 chr3 16228126 16228752 -201808406 - L1MC4 LINE L1 -1 8041 7382 239 186 0 0 chr3 16229083 16229126 -201808032 + L2 LINE L2 3224 3266 -6 351 113 0 0 chr3 16230136 16230189 -201806969 + L1MB8 LINE L1 6121 6173 -5 458 167 19 19 chr3 16230190 16230298 -201806860 - Charlie1 DNA MER1_type -60 2701 2594 215 341 38 8 chr3 16230386 16230518 -201806640 - L2 LINE L2 -255 3017 2882 616 270 49 10 chr3 16233320 16233524 -201803634 - MIR SINE MIR -44 218 7 4716 157 54 6 chr3 16234390 16235331 -201801827 - L1MB7 LINE L1 -8 6176 5193 998 224 30 25 chr3 16236534 16236771 -201800387 + MER8 DNA MER2_type 2 239 0 2114 122 14 3 chr3 16236971 16237266 -201799892 - AluJb SINE Alu -12 300 3 276 340 10 10 chr3 16237318 16237418 -201799740 + MER5A DNA MER1_type 1 100 -89 1567 167 17 6 chr3 16238957 16239301 -201797857 + L1MB8 LINE L1 5768 6177 -1 355 264 80 25 chr3 16240223 16240386 -201796772 + MARNA DNA Mariner 70 241 -345 270 0 0 0 chr3 16240428 16240458 -201796700 + (CA)n Simple_repeat Simple_repeat 2 31 0 180 0 0 0 chr3 16240457 16240477 -201796681 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 2253 93 0 53 chr3 16240524 16240845 -201796313 + AluSq SINE Alu 3 306 -7 971 195 62 44 chr3 16241113 16241333 -201795825 + L1MA6 LINE L1 6024 6251 -49 2355 107 3 0 chr3 16241333 16241643 -201795515 + AluSp SINE Alu 1 311 -2 971 195 62 44 chr3 16241643 16241694 -201795464 + L1MA6 LINE L1 6251 6300 0 2511 69 0 0 chr3 16241765 16242069 -201795089 + AluY SINE Alu 1 304 -7 1950 77 59 25 chr3 16242711 16242997 -201794161 + AluSx SINE Alu 11 306 -6 974 194 88 150 chr3 16243475 16243589 -201793569 + L1ME3A LINE L1 5412 5532 -630 2309 99 0 3 chr3 16243589 16243901 -201793257 + AluSq SINE Alu 1 311 -2 974 194 88 150 chr3 16243901 16244506 -201792652 + L1ME3A LINE L1 5532 6067 -95 1345 199 84 47 chr3 16244543 16244946 -201792212 + MER95 LTR ERV 14 431 0 1852 136 37 0 chr3 16245267 16245565 -201791593 + AluSx SINE Alu 1 308 0 523 251 41 23 chr3 16245941 16246112 -201791046 + L2 LINE L2 3125 3298 -15 2411 80 0 10 chr3 16246612 16246924 -201790234 + AluSc SINE Alu 1 309 0 499 350 68 23 chr3 16247235 16247764 -201789394 + L2 LINE L2 2140 2692 -622 1998 133 20 0 chr3 16247904 16248197 -201788961 - AluSx SINE Alu -13 299 1 201 345 43 7 chr3 16248275 16248414 -201788744 - L2 LINE L2 -1365 1949 1806 202 216 0 0 chr3 16251741 16251778 -201785380 + CT-rich Low_complexity Low_complexity 2 38 0 2240 100 0 10 chr3 16252816 16253116 -201784042 + AluSx SINE Alu 1 297 -15 231 288 38 12 chr3 16253235 16253315 -201783843 + MIR3 SINE MIR 105 186 -22 310 267 86 26 chr3 16253423 16253539 -201783619 - L2 LINE L2 -5 3267 3145 2326 99 3 0 chr3 16254061 16254364 -201782794 + AluSq SINE Alu 1 304 -9 191 277 76 42 chr3 16257625 16257744 -201779414 - MIR SINE MIR -76 186 64 21 0 0 0 chr3 16257774 16257795 -201779363 + AT_rich Low_complexity Low_complexity 1 21 0 2163 120 40 0 chr3 16257801 16258101 -201779057 + AluSx SINE Alu 1 312 0 182 259 121 0 chr3 16258308 16258366 -201778792 + L2 LINE L2 3207 3271 -1 27 62 0 0 chr3 16258455 16258503 -201778655 + AT_rich Low_complexity Low_complexity 1 48 0 2736 16 0 23 chr3 16258534 16258844 -201778314 + AluYb8 SINE Alu 1 303 -15 2347 109 0 0 chr3 16258917 16259221 -201777937 + AluSx SINE Alu 3 306 -6 641 167 125 0 chr3 16259622 16259766 -201777392 + MER5B DNA MER1_type 17 178 0 541 233 177 19 chr3 16260069 16260340 -201776818 + MER5C DNA MER1_type 1 314 -10 1324 170 8 13 chr3 16260658 16260893 -201776265 - MER46A DNA MER2_type 0 236 3 204 209 0 0 chr3 16260991 16261034 -201776124 + L2 LINE L2 3266 3308 -5 664 235 103 91 chr3 16261892 16262637 -201774521 + L1ME4a LINE L1 5267 6024 -97 522 0 0 0 chr3 16263121 16263179 -201773979 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 1648 157 46 29 chr3 16263179 16263460 -201773698 - AluJb SINE Alu -26 286 1 291 28 0 0 chr3 16263944 16263980 -201773178 + (CA)n Simple_repeat Simple_repeat 2 37 0 2018 136 36 0 chr3 16264291 16264592 -201772566 + AluSx SINE Alu 1 312 0 23 0 0 0 chr3 16265454 16265477 -201771681 + AT_rich Low_complexity Low_complexity 1 23 0 2073 109 0 3 chr3 16265641 16265926 -201771232 - AluSx SINE Alu -8 304 21 1754 264 72 14 chr3 16266518 16267086 -201770072 - L1ME3A LINE L1 -161 6009 5409 838 165 90 66 chr3 16267166 16267378 -201769780 + MER20 DNA MER1_type 1 217 -2 219 284 15 15 chr3 16268311 16268378 -201768780 + MER5B DNA MER1_type 2 68 -110 330 269 21 11 chr3 16269093 16269186 -201767972 + L2 LINE L2 3179 3272 0 223 365 52 9 chr3 16270288 16270403 -201766755 + MIR SINE MIR 16 135 -73 1414 201 7 17 chr3 16271163 16271456 -201765702 - AluJo SINE Alu -22 290 1 514 254 139 86 chr3 16272295 16272701 -201764457 + MLT1K LTR MaLR 76 512 -76 2246 116 0 10 chr3 16272701 16273003 -201764155 - AluSg SINE Alu -11 299 1 514 254 139 86 chr3 16273003 16273064 -201764094 + MLT1K LTR MaLR 512 568 -20 369 240 52 31 chr3 16273930 16274026 -201763132 + MER5B DNA MER1_type 81 178 0 222 242 202 10 chr3 16274037 16274136 -201763022 - MIR SINE MIR -55 153 36 612 244 72 62 chr3 16274235 16274491 -201762667 + L1ME3A LINE L1 5341 5602 -562 5129 130 48 20 chr3 16274491 16275615 -201761543 - L1PA13 LINE L1 0 6163 4996 612 244 72 62 chr3 16275615 16275649 -201761509 + L1ME3A LINE L1 5602 5634 -530 771 195 54 19 chr3 16275672 16275885 -201761273 + MER106B DNA MER1_type 2 234 -2 531 253 154 18 chr3 16275887 16276160 -201760998 + L1ME3A LINE L1 5653 5962 -208 1855 157 3 7 chr3 16276514 16276808 -201760350 + AluJb SINE Alu 16 308 -4 1659 162 0 70 chr3 16277239 16277567 -201759591 - AluJo SINE Alu -7 305 1 208 222 153 14 chr3 16277816 16277888 -201759270 - MIR SINE MIR -83 179 98 820 179 0 8 chr3 16278085 16278219 -201758939 + AluJo SINE Alu 3 135 -177 2413 88 3 7 chr3 16278220 16278528 -201758630 + AluSx SINE Alu 1 307 -5 1985 143 3 13 chr3 16278642 16278943 -201758215 + AluSg1 SINE Alu 1 298 -11 2374 109 3 0 chr3 16279201 16279513 -201757645 + AluSq SINE Alu 1 313 0 2885 0 0 0 chr3 16279568 16279869 -201757289 + AluYa5 SINE Alu 1 301 -10 240 230 135 0 chr3 16280254 16280328 -201756830 + MIR SINE MIR 127 210 -52 2342 109 0 0 chr3 16280824 16281136 -201756022 + AluSx SINE Alu 1 312 0 589 92 0 0 chr3 16281504 16281580 -201755578 - AluS SINE Alu -236 77 2 2359 86 0 13 chr3 16281724 16282025 -201755133 + AluY SINE Alu 1 297 -14 181 29 29 57 chr3 16282266 16282301 -201754857 + (TTTTTA)n Simple_repeat Simple_repeat 2 35 0 480 18 0 0 chr3 16282914 16282971 -201754187 + (TG)n Simple_repeat Simple_repeat 2 58 0 608 264 63 116 chr3 16283877 16284335 -201752823 + MLT1K LTR MaLR 151 584 -4 396 0 0 0 chr3 16286050 16286094 -201751064 + (TG)n Simple_repeat Simple_repeat 2 45 0 235 241 54 108 chr3 16286590 16286756 -201750402 + MIR SINE MIR 106 262 0 533 287 68 93 chr3 16286861 16287335 -201749823 + L2 LINE L2 2637 3117 -196 1784 170 0 29 chr3 16287335 16287641 -201749517 - AluJo SINE Alu -10 302 6 533 287 68 93 chr3 16287641 16287817 -201749341 + L2 LINE L2 3117 3296 -17 324 279 36 21 chr3 16288456 16288596 -201748562 + MIR SINE MIR 56 197 -65 1110 294 104 19 chr3 16289422 16289884 -201747274 + MLT1K LTR MaLR 88 588 0 2176 117 24 0 chr3 16289926 16290224 -201746934 + AluSx SINE Alu 1 305 -7 323 326 54 0 chr3 16290484 16290576 -201746582 - L2 LINE L2 -20 3252 3156 278 252 62 41 chr3 16291294 16291437 -201745721 + MIR SINE MIR 101 247 -15 1459 196 101 6 chr3 16291438 16291755 -201745403 + MER7A DNA MER2_type 1 345 -1 2043 137 3 13 chr3 16291956 16292256 -201744902 - AluSx SINE Alu -15 297 1 2402 95 3 0 chr3 16292487 16292792 -201744366 - AluSp SINE Alu -7 306 1 421 309 37 31 chr3 16294090 16294281 -201742877 - L2 LINE L2 -22 3291 3100 2076 114 4 0 chr3 16294285 16294589 -201742569 + AluSx SINE Alu 1 305 0 464 242 87 13 chr3 16294598 16294747 -201742411 - MIR SINE MIR -102 160 1 2218 105 23 3 chr3 16294808 16295112 -201742046 - AluSq SINE Alu -3 310 1 1594 145 16 76 chr3 16296177 16296480 -201740678 - AluJb SINE Alu -10 302 18 2268 77 39 0 chr3 16296500 16296786 -201740372 - AluY SINE Alu -14 297 1 252 0 0 0 chr3 16296846 16296874 -201740284 + (CA)n Simple_repeat Simple_repeat 2 29 0 590 312 46 14 chr3 16296991 16297209 -201739949 - MIR SINE MIR -12 250 26 2070 133 0 17 chr3 16297572 16297874 -201739284 - AluJb SINE Alu -15 297 1 241 143 48 0 chr3 16298353 16298395 -201738763 + MLT1K LTR MaLR 537 580 -8 2137 116 3 0 chr3 16298782 16299117 -201738041 + AluSp SINE Alu 1 336 0 1329 242 44 61 chr3 16299153 16299628 -201737530 + MER74A LTR ERVL 22 488 -70 305 240 52 10 chr3 16299544 16299640 -201737518 - MER88 LTR ERVL -286 178 79 * 2408 76 0 16 chr3 16299910 16300214 -201736944 - AluY SINE Alu -12 299 1 208 296 56 0 chr3 16300219 16300290 -201736868 + MIR3 SINE MIR 127 201 -7 380 279 82 33 chr3 16301448 16301631 -201735527 - MER117 DNA MER1_type 0 197 6 238 227 120 0 chr3 16302020 16302095 -201735063 + MIR SINE MIR 155 238 -24 21 0 0 0 chr3 16302768 16302789 -201734369 + AT_rich Low_complexity Low_complexity 1 21 0 1889 158 40 0 chr3 16302869 16303192 -201733966 - MER1B DNA MER1_type 0 337 2 339 286 13 108 chr3 16303273 16303397 -201733761 - MIR3 SINE MIR -41 167 33 2301 68 0 0 chr3 16303397 16303675 -201733483 + AluY SINE Alu 1 278 -33 180 0 0 0 chr3 16303675 16303695 -201733463 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 339 286 13 108 chr3 16303695 16303726 -201733432 - MIR3 SINE MIR -173 35 22 310 226 57 81 chr3 16303995 16304119 -201733039 - L2 LINE L2 -2 3270 3150 238 294 141 29 chr3 16304119 16304289 -201732869 - MER117 DNA MER1_type -7 190 2 2525 188 32 28 chr3 16305426 16305994 -201731164 + L1MB8 LINE L1 5607 6176 -2 482 200 0 0 chr3 16307063 16307143 -201730015 + MER3 DNA MER1_type 2 81 -128 238 270 0 16 chr3 16307178 16307241 -201729917 - L2 LINE L2 -4 3268 3207 797 294 83 40 chr3 16307266 16307738 -201729420 - MLT1K LTR MaLR -6 582 91 1324 140 32 77 chr3 16309422 16309551 -201727607 - L1MB7 LINE L1 0 6184 6051 2252 126 0 3 chr3 16309551 16309861 -201727297 - AluSx SINE Alu -3 309 1 1324 140 32 77 chr3 16309861 16310016 -201727142 - L1MB7 LINE L1 -133 6051 5913 420 82 0 0 chr3 16310030 16310091 -201727067 + (TG)n Simple_repeat Simple_repeat 2 62 0 1770 141 8 0 chr3 16310481 16310744 -201726414 + AluSx SINE Alu 35 299 -13 193 317 37 0 chr3 16311558 16311640 -201725518 + L3 LINE CR1 1209 1293 -284 590 250 220 0 chr3 16311674 16311874 -201725284 + MIR SINE MIR 1 244 -18 1058 159 12 12 chr3 16312566 16312736 -201724422 - FRAM SINE Alu -10 166 1 1696 182 40 3 chr3 16313918 16314242 -201722916 - MER1B DNA MER1_type 0 337 2 347 293 32 32 chr3 16314323 16314446 -201722712 - MIR3 SINE MIR -41 167 45 2209 82 0 0 chr3 16314447 16314726 -201722432 + AluY SINE Alu 1 279 -32 477 281 74 48 chr3 16314933 16315164 -201721994 - L2 LINE L2 -779 2535 2299 313 342 80 21 chr3 16315578 16315765 -201721393 - MIR SINE MIR -10 252 55 1197 169 0 0 chr3 16316023 16316230 -201720928 - AluSg/x SINE Alu -2 310 104 740 169 0 0 chr3 16316361 16316485 -201720673 + AluSg/x SINE Alu 184 307 -5 1591 176 64 7 chr3 16316951 16317246 -201719912 - AluJb SINE Alu 0 312 1 1720 219 70 10 chr3 16317530 16317918 -201719240 - Tigger1 DNA MER2_type -2007 411 1 11215 53 7 50 chr3 16319392 16321134 -201716024 - L1P LINE L1 -2265 3881 2215 3543 174 79 45 chr3 16321524 16322436 -201714722 - L1MB3 LINE L1 -10 6173 5215 2378 85 13 0 chr3 16322436 16322741 -201714417 + AluSc SINE Alu 1 309 0 3543 174 79 45 chr3 16322741 16322905 -201714253 - L1MB3 LINE L1 -968 5215 5058 416 109 118 8 chr3 16323048 16323167 -201713991 - THE1B-int LTR MaLR -1448 132 1 2064 155 25 19 chr3 16323167 16323529 -201713629 - THE1B LTR MaLR 0 364 1 276 152 22 0 chr3 16323529 16323575 -201713583 - Alu SINE Alu -253 47 1 3013 222 27 20 chr3 16323576 16323837 -201713321 - L1M4 LINE L1 -750 5396 5138 2058 173 34 29 chr3 16323837 16324253 -201712905 + MER47B DNA MER2_type 1 418 0 3013 222 27 20 chr3 16324253 16324875 -201712283 - L1M4 LINE L1 -1008 5138 4507 1861 196 63 68 chr3 16325560 16326194 -201710964 - L1MC4 LINE L1 -8 8034 7404 722 195 27 0 chr3 16326448 16326597 -201710561 - AluSx SINE Alu -159 153 1 1555 245 35 35 chr3 16326632 16327167 -201709991 - L1M4 LINE L1 -1843 4303 3769 2430 154 61 11 chr3 16327167 16327627 -201709531 - Tigger3b DNA MER2_type 0 1231 749 309 232 26 15 chr3 16327892 16327984 -201709174 - MER5A DNA MER1_type -73 116 14 399 127 0 0 chr3 16328574 16328637 -201708521 + (CA)n Simple_repeat Simple_repeat 1 63 0 408 260 99 28 chr3 16328801 16328982 -201708176 + L1ME1 LINE L1 5968 6161 -5 180 0 0 0 chr3 16330288 16330308 -201706850 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 242 308 58 10 chr3 16330981 16331085 -201706073 + MIR3 SINE MIR 54 162 -46 647 232 100 0 chr3 16331424 16331482 -201705676 - L1MC4 LINE L1 -1481 6561 6510 1730 99 0 21 chr3 16331482 16331724 -201705434 - AluSg SINE Alu -73 237 1 647 232 100 0 chr3 16331724 16331855 -201705303 - L1MC4 LINE L1 -1532 6510 6353 646 206 19 26 chr3 16331860 16332015 -201705143 - L1ME2 LINE L1 -13 6151 5998 1235 176 59 29 chr3 16332654 16332926 -201704232 + AluJb SINE Alu 1 280 -32 1398 127 100 27 chr3 16333522 16333822 -201703336 - THE1C LTR MaLR -53 322 1 2062 127 0 7 chr3 16334028 16334328 -201702830 + AluSx SINE Alu 1 298 -14 868 161 75 11 chr3 16335327 16335513 -201701645 - Tigger1 DNA MER2_type 0 2418 2221 1943 160 61 40 chr3 16336424 16336599 -201700559 - L1MB8 LINE L1 0 6178 6004 1698 191 32 91 chr3 16336599 16336977 -201700181 - L1MC4 LINE L1 -530 5654 5255 332 167 0 0 chr3 16336977 16337031 -201700127 - MER66A LTR ERV1 -138 340 287 1698 191 32 91 chr3 16337031 16337425 -201699733 - L1MC4 LINE L1 -929 5255 5281 738 197 0 0 chr3 16337425 16337557 -201699601 - FLAM_A SINE Alu -1 132 1 1698 191 32 91 chr3 16337557 16337712 -201699446 - L1MC4 LINE L1 -902 5282 5119 185 206 88 29 chr3 16337754 16337822 -201699336 - MIR SINE MIR -109 153 82 273 278 56 0 chr3 16338122 16338212 -201698946 - MARNA DNA Mariner -242 344 250 890 132 44 0 chr3 16338719 16338878 -201698280 + MER41E LTR ERV1 10 175 -337 271 137 59 0 chr3 16338877 16338928 -201698230 + AluJb SINE Alu 79 132 -170 * 21 71 0 0 chr3 16339016 16339058 -201698100 + AT_rich Low_complexity Low_complexity 1 42 0 289 289 0 0 chr3 16339384 16339488 -201697670 - L1MB8 LINE L1 -3 6175 6072 269 185 77 0 chr3 16339500 16339565 -201697593 - L2 LINE L2 -1422 1892 1823 2078 123 3 10 chr3 16340385 16340694 -201696464 - AluSx SINE Alu -5 307 1 548 273 59 84 chr3 16340717 16340875 -201696283 - L1M4 LINE L1 -5772 770 623 2706 94 11 0 chr3 16340875 16341235 -201695923 - THE1B LTR MaLR 0 364 1 548 273 59 84 chr3 16341235 16341398 -201695760 - L1M4 LINE L1 -5919 623 457 2024 100 0 0 chr3 16341671 16341931 -201695227 - AluSc SINE Alu -49 260 1 389 287 119 96 chr3 16342062 16342456 -201694702 - L2 LINE L2 0 3272 2870 221 264 53 125 chr3 16342651 16342859 -201694299 + MIR3 SINE MIR 8 200 -8 215 259 148 0 chr3 16343518 16343599 -201693559 + MIR SINE MIR 59 151 -111 2136 99 0 0 chr3 16344290 16344562 -201692596 + AluY SINE Alu 1 272 -39 325 266 107 17 chr3 16345045 16345222 -201691936 - L1MEc LINE L1 -3642 2573 2381 240 203 17 0 chr3 16345373 16345432 -201691726 - L1MEc LINE L1 -4118 2278 2219 1871 117 0 18 chr3 16345680 16345954 -201691204 - AluSx SINE Alu 0 312 44 1721 171 39 3 chr3 16346041 16346327 -201690831 - AluJo SINE Alu -16 296 1 2009 139 3 13 chr3 16346585 16346886 -201690272 - AluSg1 SINE Alu -11 298 1 2413 87 3 7 chr3 16347000 16347310 -201689848 - AluSx SINE Alu -3 309 1 835 179 0 8 chr3 16347311 16347445 -201689713 - AluJo SINE Alu -177 135 3 247 213 147 13 chr3 16347639 16347714 -201689444 + MIR SINE MIR 95 179 -83 963 186 16 11 chr3 16348839 16349027 -201688131 - MER5A DNA MER1_type 0 189 1 452 254 33 50 chr3 16349483 16349664 -201687494 + Charlie8 DNA MER1_type 97 274 -2143 2055 123 24 0 chr3 16350205 16350497 -201686661 + AluSx SINE Alu 2 300 -12 242 54 0 27 chr3 16350497 16350534 -201686624 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 1994 155 0 0 chr3 16350714 16351010 -201686148 - AluSx SINE Alu -16 296 1 561 196 0 0 chr3 16351235 16351327 -201685831 - FRAM SINE Alu -40 136 45 641 191 203 59 chr3 16351463 16351699 -201685459 - LOR1b LTR ERV1 -191 270 1 4495 186 52 97 chr3 16351699 16353284 -201683874 - L1 LINE L1 -1252 4894 3382 216 0 0 0 chr3 16353351 16353375 -201683783 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1456 141 70 21 chr3 16353706 16353990 -201683168 + L1MB7 LINE L1 5838 6135 -49 1881 116 4 4 chr3 16354031 16354289 -201682869 - AluSx SINE Alu -54 258 1 293 89 36 0 chr3 16354289 16354345 -201682813 + L1MB7 LINE L1 6127 6184 0 321 322 116 63 chr3 16354450 16354785 -201682373 + L2 LINE L2 2904 3256 -16 27 29 0 0 chr3 16355068 16355102 -201682056 + AT_rich Low_complexity Low_complexity 1 34 0 2036 135 10 3 chr3 16355439 16355742 -201681416 - AluSx SINE Alu -7 305 1 473 302 40 36 chr3 16355797 16355902 -201681256 - Charlie8 DNA MER1_type -117 224 121 2331 86 0 0 chr3 16355902 16356194 -201680964 - AluSx SINE Alu -20 292 1 473 302 40 36 chr3 16356194 16356310 -201680848 - Charlie8 DNA MER1_type -220 121 2 1610 226 115 20 chr3 16357419 16358026 -201679132 + L1ME3A LINE L1 5421 6170 0 283 304 36 9 chr3 16358307 16358419 -201678739 + L1MC4a LINE L1 5600 5714 -2094 1762 170 35 7 chr3 16358419 16358707 -201678451 + AluJo SINE Alu 1 296 -16 320 302 26 69 chr3 16358707 16358896 -201678262 + L1MC4a LINE L1 5794 5974 -1834 74 23 0 0 chr3 16359016 16359104 -201678054 + AT_rich Low_complexity Low_complexity 1 88 0 657 175 18 0 chr3 16359187 16359301 -201677857 - AluJb SINE Alu -12 300 185 38 96 0 0 chr3 16359301 16359416 -201677742 + AT_rich Low_complexity Low_complexity 1 115 0 12589 118 43 9 chr3 16360209 16360624 -201676534 + Tigger1 DNA MER2_type 63 462 -1956 2356 101 0 19 chr3 16360624 16360942 -201676216 + AluSx SINE Alu 1 312 0 12589 118 43 9 chr3 16360942 16362623 -201674535 + Tigger1 DNA MER2_type 462 2230 -188 2040 86 4 0 chr3 16362625 16362882 -201674276 + AluY SINE Alu 1 258 -53 35 0 0 0 chr3 16362982 16363017 -201674141 + AT_rich Low_complexity Low_complexity 1 35 0 3698 236 70 24 chr3 16363023 16364698 -201672460 + L1MCa LINE L1 2309 4050 -2376 3187 123 97 19 chr3 16364698 16365316 -201671842 + Tigger3b DNA MER2_type 1 666 -565 198 103 0 0 chr3 16365519 16365548 -201671610 + (TCCC)n Simple_repeat Simple_repeat 3 31 0 225 0 100 0 chr3 16366441 16366481 -201670677 + T-rich Low_complexity Low_complexity 2 45 0 316 248 89 10 chr3 16367934 16368035 -201669123 - MIR SINE MIR -88 174 66 325 264 0 0 chr3 16369184 16369256 -201667902 + MARNA DNA Mariner 90 161 -425 21 0 0 0 chr3 16369485 16369506 -201667652 + AT_rich Low_complexity Low_complexity 1 21 0 1258 124 43 74 chr3 16369697 16370020 -201667138 - AluSq SINE Alu 0 313 1 2524 46 0 16 chr3 16370259 16370564 -201666594 + AluYa5 SINE Alu 1 300 -11 604 256 63 43 chr3 16370685 16370986 -201666172 + L1M4 LINE L1 2636 2942 -3204 2067 30 8 11 chr3 16371094 16371358 -201665800 - L1HS LINE L1 -185 5970 5708 1419 287 116 29 chr3 16371368 16372023 -201665135 + HAL1 LINE L1 200 911 -1596 2404 88 3 0 chr3 16372163 16372460 -201664698 + AluSg SINE Alu 1 298 -12 358 297 62 20 chr3 16373013 16373208 -201663950 + MIR SINE MIR 1 203 -59 548 196 0 83 chr3 16373228 16373361 -201663797 + AluJb SINE Alu 103 224 -88 4894 116 51 73 chr3 16373493 16374505 -201662653 + pTR5 LTR ERV1 743 2025 -413 345 224 31 20 chr3 16374505 16374603 -201662555 + LTR30 LTR ERV1 544 642 -80 3537 145 264 23 chr3 16374606 16376425 -201660733 + pTR5 LTR ERV1 172 2606 0 1404 169 43 29 chr3 16378550 16378828 -201658330 + AluJo SINE Alu 1 282 -30 1339 71 152 0 chr3 16378860 16379058 -201658100 - MER30 DNA MER1_type 0 230 3 640 275 94 65 chr3 16379242 16379312 -201657846 + MLT1J LTR MaLR 1 67 -444 183 114 0 0 chr3 16379312 16379347 -201657811 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 640 275 94 65 chr3 16379347 16379579 -201657579 + MLT1J LTR MaLR 67 320 -191 1546 196 50 79 chr3 16379579 16380001 -201657157 + Charlie4a DNA MER1_type 3 409 -1552 2222 113 0 3 chr3 16380001 16380302 -201656856 - AluSx SINE Alu -12 300 1 1546 196 50 79 chr3 16380302 16380399 -201656759 + Charlie4a DNA MER1_type 409 507 -1 640 275 94 65 chr3 16380399 16380498 -201656660 + MLT1J LTR MaLR 320 415 -96 6228 37 12 12 chr3 16380691 16381415 -201655743 + SVA Other Other 663 1386 0 12838 31 11 0 chr3 16381420 16383691 -201653467 + L1PA3 LINE L1 3867 6152 -3 2055 149 10 0 chr3 16383823 16384132 -201653026 - AluSx SINE Alu 0 312 1 801 220 29 24 chr3 16385240 16385449 -201651709 + L1ME3 LINE L1 5953 6162 0 286 342 5 20 chr3 16386274 16386488 -201650670 - MIR SINE MIR -11 251 44 901 155 23 6 chr3 16386894 16387068 -201650090 - L1MB3 LINE L1 -1 6182 6006 197 292 83 0 chr3 16387073 16387145 -201650013 + L2 LINE L2 3190 3267 -5 1537 131 12 116 chr3 16387656 16387991 -201649167 - AluJo SINE Alu -2 300 1 1535 173 76 14 chr3 16388014 16388303 -201648855 - AluJo SINE Alu -3 309 3 575 202 326 16 chr3 16388687 16388880 -201648278 - L1M4 LINE L1 -6288 254 2 1727 163 29 38 chr3 16388965 16389278 -201647880 - AluJb SINE Alu -2 310 1 182 103 0 51 chr3 16389292 16389331 -201647827 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 1946 140 4 0 chr3 16389358 16389636 -201647522 - AluSg SINE Alu -31 279 1 24 0 0 0 chr3 16390781 16390805 -201646353 + AT_rich Low_complexity Low_complexity 1 24 0 211 298 71 85 chr3 16394083 16394224 -201642934 - MIR SINE MIR -54 154 16 2333 104 0 7 chr3 16394531 16394840 -201642318 - AluSx SINE Alu -5 307 1 2018 107 48 10 chr3 16394924 16395213 -201641945 + AluSx SINE Alu 1 300 -12 194 232 24 49 chr3 16396232 16396314 -201640844 - MER5B DNA MER1_type -98 80 1 327 301 113 38 chr3 16396746 16396959 -201640199 - MIR SINE MIR -7 255 27 480 224 85 18 chr3 16397734 16397899 -201639259 - MIR SINE MIR -6 256 81 202 214 0 0 chr3 16398364 16398406 -201638752 + MIR SINE MIR 81 122 -140 2176 206 203 7 chr3 16399135 16399480 -201637678 - L1MB4 LINE L1 -173 6007 5731 2031 130 3 20 chr3 16399480 16399780 -201637378 + AluSg SINE Alu 1 295 -15 2176 206 203 7 chr3 16399780 16400104 -201637054 - L1MB4 LINE L1 -449 5731 5210 1459 182 29 42 chr3 16400105 16400413 -201636745 - AluJo SINE Alu -6 306 3 182 238 0 0 chr3 16400568 16400610 -201636548 + MIR SINE MIR 81 122 -140 565 163 0 0 chr3 16401327 16401419 -201635739 - AluJo SINE Alu -12 300 209 1111 118 52 0 chr3 16401420 16401573 -201635585 - AluJo SINE Alu -151 161 1 234 191 0 0 chr3 16401806 16401853 -201635305 + T-rich Low_complexity Low_complexity 1 47 0 576 273 36 43 chr3 16401926 16402179 -201634979 + L1ME3A LINE L1 5877 6127 -43 405 0 0 0 chr3 16403069 16403114 -201634044 + (CA)n Simple_repeat Simple_repeat 2 46 0 2443 83 0 3 chr3 16403847 16404148 -201633010 - AluSg SINE Alu -10 300 1 180 227 80 13 chr3 16404296 16404371 -201632787 + MIR SINE MIR 65 144 -64 452 308 56 14 chr3 16404865 16405079 -201632079 - MIR SINE MIR -14 248 26 360 200 14 0 chr3 16405632 16405702 -201631456 + MIR SINE MIR 79 149 -113 719 223 51 59 chr3 16406352 16406534 -201630624 + MIR SINE MIR 1 182 -80 2168 116 0 39 chr3 16406534 16406844 -201630314 + AluSp SINE Alu 1 298 -15 719 223 51 59 chr3 16406844 16406917 -201630241 + MIR SINE MIR 182 254 -8 758 141 76 65 chr3 16408388 16408503 -201628655 - MER53 DNA DNA -3 186 67 2377 100 0 0 chr3 16408503 16408802 -201628356 + AluSg SINE Alu 1 299 -11 758 141 76 65 chr3 16408802 16408870 -201628288 - MER53 DNA DNA -122 67 1 370 284 74 62 chr3 16409656 16409739 -201627419 - MIR SINE MIR -16 246 166 1958 155 3 7 chr3 16409739 16410049 -201627109 + AluSx SINE Alu 1 309 -3 370 284 74 62 chr3 16410049 16410208 -201626950 - MIR SINE MIR -96 166 1 361 38 57 0 chr3 16410226 16410279 -201626879 - L1MB7 LINE L1 0 6184 6129 289 139 23 0 chr3 16410299 16410342 -201626816 - AluSg/x SINE Alu -123 177 134 970 121 0 27 chr3 16410356 16410505 -201626653 - AluJb SINE Alu 0 312 168 305 293 20 0 chr3 16411407 16411506 -201625652 - MER103 DNA DNA -50 116 16 2453 87 0 0 chr3 16411959 16412268 -201624890 - AluY SINE Alu -2 309 1 754 192 0 0 chr3 16412623 16412748 -201624410 - FLAM_A SINE Alu -7 126 2 2766 114 21 5 chr3 16412886 16413314 -201623844 + L1PA13 LINE L1 5718 6152 -11 628 155 0 106 chr3 16413498 16413640 -201623518 + FLAM_A SINE Alu 13 139 -3 22 0 0 0 chr3 16413768 16413790 -201623368 + AT_rich Low_complexity Low_complexity 1 22 0 231 103 0 0 chr3 16413790 16413829 -201623329 + (GA)n Simple_repeat Simple_repeat 2 40 0 2237 86 0 4 chr3 16413830 16414109 -201623049 - AluSc SINE Alu -31 278 1 1810 138 7 21 chr3 16414313 16414627 -201622531 + AluJb SINE Alu 7 316 0 212 222 0 0 chr3 16415725 16415770 -201621388 - L2 LINE L2 -18 3295 3251 234 315 52 95 chr3 16415840 16415973 -201621185 - L2 LINE L2 -42 3230 3093 2184 122 0 7 chr3 16415973 16416276 -201620882 + AluSq SINE Alu 1 301 -12 234 315 52 95 chr3 16416276 16416469 -201620689 - L2 LINE L2 -179 3093 2918 310 350 129 17 chr3 16416498 16416909 -201620249 - L2 LINE L2 -494 2820 2364 206 371 36 18 chr3 16417836 16418057 -201619101 - L2 LINE L2 -470 2844 2620 414 221 150 0 chr3 16418499 16418639 -201618519 - MIR SINE MIR -16 246 86 2477 91 0 0 chr3 16418668 16418977 -201618181 + AluSg SINE Alu 1 309 -1 1047 91 0 0 chr3 16419418 16419550 -201617608 + AluY SINE Alu 1 132 -179 303 274 142 18 chr3 16419842 16419955 -201617203 - L2 LINE L2 -1 3271 3145 379 217 43 0 chr3 16421179 16421271 -201615887 + MER112 DNA MER1_type 158 253 -7 257 250 0 0 chr3 16421674 16421734 -201615424 - L1ME LINE L1 -453 5668 5609 1897 160 14 0 chr3 16421734 16422022 -201615136 + AluJo SINE Alu 1 292 -20 891 246 14 19 chr3 16422047 16422258 -201614900 + MER63A DNA MER1_type 1 210 0 320 233 110 0 chr3 16423086 16423159 -201613999 - MIR SINE MIR -101 107 27 24 32 0 0 chr3 16423159 16423190 -201613968 + AT_rich Low_complexity Low_complexity 1 31 0 189 293 17 0 chr3 16423680 16423738 -201613420 - MIR3 SINE MIR -39 169 111 2206 144 35 9 chr3 16423824 16424163 -201612995 + MER7A DNA MER2_type 1 346 0 2330 94 3 0 chr3 16424307 16424604 -201612554 + AluSp SINE Alu 1 298 -15 330 226 12 29 chr3 16424606 16424709 -201612449 - MIR SINE MIR -64 144 45 2424 90 0 0 chr3 16425205 16425516 -201611642 - AluY SINE Alu 0 311 1 244 245 189 47 chr3 16426038 16426144 -201611014 - L2 LINE L2 -2 3270 3150 225 303 23 80 chr3 16426321 16426496 -201610662 - MER5A DNA MER1_type -18 171 7 836 160 19 19 chr3 16426527 16426683 -201610475 + MER5B DNA MER1_type 21 176 -2 490 210 150 54 chr3 16426707 16426874 -201610284 - MER5A DNA MER1_type 0 189 7 265 205 26 77 chr3 16426995 16427073 -201610085 - MER5A DNA MER1_type -18 171 98 416 234 131 0 chr3 16427104 16427249 -201609909 - MIR SINE MIR -30 232 69 410 295 54 31 chr3 16427533 16427723 -201609435 + L1ME4a LINE L1 5701 5900 -221 1690 142 0 54 chr3 16427723 16428039 -201609119 + AluSx SINE Alu 1 299 -13 410 295 54 31 chr3 16428039 16428146 -201609012 + L1ME4a LINE L1 5900 6003 -118 865 169 96 6 chr3 16428248 16428414 -201608744 - AluJo SINE Alu -131 181 1 271 269 15 0 chr3 16428620 16428687 -201608471 + CT-rich Low_complexity Low_complexity 1 68 0 507 245 75 0 chr3 16428757 16428916 -201608242 - L1ME4a LINE L1 -215 5906 5736 260 222 74 0 chr3 16428928 16428982 -201608176 - L2 LINE L2 -71 3242 3185 1944 161 7 0 chr3 16429804 16430114 -201607044 - AluJo SINE Alu 0 312 1 180 310 0 0 chr3 16431026 16431084 -201606074 - L2 LINE L2 -2 3311 3254 715 223 88 0 chr3 16431381 16431529 -201605629 + MER5B DNA MER1_type 1 161 -17 3196 209 105 28 chr3 16431529 16432543 -201604615 - L1ME2 LINE L1 -7 6157 5052 473 279 71 77 chr3 16432782 16433122 -201604036 - L1MEc LINE L1 -6023 373 36 2390 91 0 3 chr3 16433169 16433476 -201603682 - AluSc SINE Alu -3 306 1 2341 160 78 12 chr3 16433949 16434349 -201602809 - MSTB LTR MaLR 0 426 1 2379 83 3 10 chr3 16434382 16434682 -201602476 - AluSc SINE Alu -11 298 1 348 334 121 42 chr3 16434928 16435260 -201601898 + L2 LINE L2 2914 3271 -1 6051 54 6 3 chr3 16435267 16435990 -201601168 + L1PA5 LINE L1 5429 6153 -1 360 326 105 39 chr3 16436286 16436655 -201600503 + L2 LINE L2 2800 3198 -74 183 316 0 18 chr3 16436793 16436850 -201600308 - MIR SINE MIR -119 89 34 737 176 0 22 chr3 16436900 16437036 -201600122 - FLAM_C SINE Alu 0 133 1 409 301 32 19 chr3 16437087 16437243 -201599915 + MLT1H LTR MaLR 47 204 -345 370 218 109 0 chr3 16437403 16437504 -201599654 + MLT1I LTR MaLR 273 384 -25 212 259 35 17 chr3 16437567 16437625 -201599533 + L2 LINE L2 3246 3304 -9 26 0 0 0 chr3 16438275 16438301 -201598857 + AT_rich Low_complexity Low_complexity 1 26 0 1305 194 20 28 chr3 16438301 16438554 -201598604 - AluJb SINE Alu -31 281 31 256 231 0 0 chr3 16438554 16438606 -201598552 + LTR30 LTR ERV1 1 52 -670 1753 195 215 12 chr3 16438606 16439114 -201598044 + pTR5 LTR ERV1 1395 2005 -433 333 180 82 82 chr3 16439114 16439236 -201597922 + LTR30 LTR ERV1 553 716 -78 1970 93 48 110 chr3 16439237 16439593 -201597565 + LTR12 LTR ERV1 381 714 0 477 316 15 0 chr3 16440564 16440700 -201596458 - MIR3 SINE MIR -3 205 68 1007 243 62 35 chr3 16441316 16441657 -201595501 + L1ME LINE L1 5467 5816 -305 373 225 108 1 chr3 16441672 16441779 -201595379 + FLAM_A SINE Alu 23 127 -6 273 287 167 60 chr3 16442018 16442413 -201594745 + L1MC/D LINE L1 3074 3425 -2721 2393 59 0 13 chr3 16442413 16442716 -201594442 - AluY SINE Alu -12 299 1 273 287 167 60 chr3 16442716 16442969 -201594189 + L1MC/D LINE L1 3425 3650 -2496 1753 154 3 11 chr3 16442969 16443255 -201593903 - AluJb SINE Alu -28 284 1 273 287 167 60 chr3 16443255 16444185 -201592973 + L1MC/D LINE L1 3650 4984 -1162 324 285 189 65 chr3 16444349 16444611 -201592547 + L1MC/D LINE L1 5255 5483 -2325 2259 112 3 0 chr3 16444611 16444906 -201592252 + AluSx SINE Alu 1 296 -16 324 285 189 65 chr3 16444906 16445134 -201592024 + L1MC/D LINE L1 5483 5806 -2002 2412 98 0 0 chr3 16446092 16446397 -201590761 + AluSq SINE Alu 1 305 -8 2048 98 14 4 chr3 16446480 16446756 -201590402 + AluSg SINE Alu 1 279 -31 1875 122 44 10 chr3 16447902 16448197 -201588961 + AluSx SINE Alu 1 305 -7 323 114 0 0 chr3 16448198 16448242 -201588916 + Alu SINE Alu 1 44 -264 1996 99 20 10 chr3 16448242 16448536 -201588622 + AluSg SINE Alu 1 297 -13 182 300 64 18 chr3 16448589 16448699 -201588459 + MIR SINE MIR 119 233 -29 1440 50 156 0 chr3 16448748 16448947 -201588211 - MER30 DNA MER1_type 0 230 1 2103 106 17 0 chr3 16449257 16449550 -201587608 - AluSx SINE Alu -14 298 1 2060 121 7 0 chr3 16449682 16449964 -201587194 + AluSx SINE Alu 1 284 -28 242 225 0 0 chr3 16450086 16450126 -201587032 - L2 LINE L2 -16 3256 3217 2476 66 0 7 chr3 16450176 16450480 -201586678 + AluY SINE Alu 1 302 -9 260 185 0 0 chr3 16450553 16450607 -201586551 - L1MC4 LINE L1 -1337 6705 6652 197 307 0 34 chr3 16450613 16450701 -201586457 + MIR SINE MIR 106 190 -72 30 0 0 0 chr3 16451269 16451299 -201585859 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr3 16451752 16451780 -201585378 + AT_rich Low_complexity Low_complexity 1 28 0 1415 276 109 12 chr3 16451815 16452428 -201584730 - L1ME3 LINE L1 -133 6029 5355 301 306 56 9 chr3 16453044 16453152 -201584006 + L2 LINE L2 3143 3255 -17 4350 198 71 21 chr3 16453552 16454589 -201582569 + L1MC3 LINE L1 6697 7785 0 656 181 0 146 chr3 16455434 16455492 -201581666 - L1MB8 LINE L1 -1 6177 6112 1736 133 58 25 chr3 16455492 16455770 -201581388 - AluJb SINE Alu -25 287 1 656 181 0 146 chr3 16455770 16455916 -201581242 - L1MB8 LINE L1 -66 6112 6003 1558 194 11 3 chr3 16456521 16456805 -201580353 + AluJb SINE Alu 1 286 -26 340 292 84 40 chr3 16457353 16457579 -201579579 - MIR SINE MIR -14 248 13 1578 136 26 22 chr3 16458227 16458500 -201578658 - L1MB7 LINE L1 -16 6168 5895 1851 137 27 23 chr3 16458800 16459099 -201578059 - AluSx SINE Alu -12 300 1 2523 64 0 0 chr3 16459489 16459786 -201577372 + AluY SINE Alu 1 297 -14 1889 144 32 0 chr3 16460243 16460527 -201576631 - AluJb SINE Alu -17 295 3 208 241 17 0 chr3 16460677 16460735 -201576423 + (TG)n Simple_repeat Simple_repeat 2 60 0 398 306 99 0 chr3 16461724 16461845 -201575313 - L2 LINE L2 -6 3266 3134 310 220 83 46 chr3 16463837 16463946 -201573212 - MIR SINE MIR -95 113 1 186 293 12 61 chr3 16465228 16465310 -201571848 + MIR3 SINE MIR 6 83 -125 1388 126 50 50 chr3 16465318 16465580 -201571578 + L1MB7 LINE L1 5910 6171 -13 366 284 11 11 chr3 16466089 16466184 -201570974 - L2 LINE L2 -8 3264 3170 2354 36 7 55 chr3 16466304 16466613 -201570545 - AluY SINE Alu -17 294 1 2520 47 3 0 chr3 16466721 16467017 -201570141 - AluY SINE Alu -13 298 2 268 259 53 117 chr3 16467129 16467376 -201569782 + MLT1J2 LTR MaLR 67 297 -153 266 163 138 12 chr3 16467398 16467478 -201569680 + MLT1J1 LTR MaLR 357 446 0 214 225 12 88 chr3 16467691 16467771 -201569387 + L2 LINE L2 3238 3311 -2 313 330 133 6 chr3 16468092 16468265 -201568893 - MIR3 SINE MIR 0 208 14 251 305 231 27 chr3 16469319 16469622 -201567536 + L2 LINE L2 1817 2057 -1257 2168 130 42 11 chr3 16469622 16469976 -201567182 - MER47A DNA MER2_type 0 366 2 251 305 231 27 chr3 16469976 16470230 -201566928 + L2 LINE L2 2057 2488 -826 270 222 159 26 chr3 16470250 16470385 -201566773 + MIR SINE MIR 83 251 -11 1762 159 0 17 chr3 16470392 16470693 -201566465 + AluSx SINE Alu 1 296 -16 1674 143 38 0 chr3 16472074 16472361 -201564797 - L1MB2 LINE L1 -1 6170 5873 1464 81 15 5 chr3 16472429 16472626 -201564532 - AluSc SINE Alu -12 297 99 622 209 44 73 chr3 16473196 16473267 -201563891 - MER46C DNA MER2_type -134 204 132 1480 197 7 7 chr3 16473267 16473546 -201563612 - AluJb SINE Alu -33 279 1 622 209 44 73 chr3 16473546 16473680 -201563478 - MER46C DNA MER2_type -206 132 5 2195 95 30 0 chr3 16474544 16474848 -201562310 + AluSq SINE Alu 1 313 0 1639 172 14 7 chr3 16475477 16475774 -201561384 - AluSg SINE Alu -11 299 1 187 268 21 155 chr3 16475776 16475918 -201561240 + MER5A DNA MER1_type 49 171 -18 216 152 0 0 chr3 16475786 16475819 -201561339 - MER5B DNA MER1_type -46 132 100 1638 116 71 15 chr3 16476084 16476376 -201560782 + AluSq SINE Alu 1 307 0 4917 55 38 16 chr3 16477890 16478891 -201558267 - MER11A LTR ERVK -87 1179 1 256 296 35 61 chr3 16478943 16479058 -201558100 - L2 LINE L2 -1 3271 3160 431 311 85 85 chr3 16479078 16479419 -201557739 - L2 LINE L2 -1 3271 2931 394 253 50 33 chr3 16479576 16479751 -201557407 + MER20B DNA MER1_type 43 213 -6 2162 93 0 32 chr3 16479817 16480130 -201557028 + AluSg SINE Alu 1 303 -7 214 383 78 23 chr3 16480303 16480431 -201556727 + L2 LINE L2 3136 3270 -2 1444 108 9 14 chr3 16480452 16480674 -201556484 - AluSg/x SINE Alu -4 308 88 664 279 123 5 chr3 16480708 16480912 -201556246 - MIR SINE MIR -15 247 20 595 259 80 22 chr3 16480926 16481150 -201556008 - L3 LINE CR1 -707 870 634 180 337 58 35 chr3 16481160 16481246 -201555912 + L2 LINE L2 3177 3264 -8 610 343 104 24 chr3 16481247 16481582 -201555576 - L3 LINE CR1 -909 668 307 445 218 53 68 chr3 16481583 16481716 -201555442 + MER91B DNA MER1_type 2 132 -58 345 284 42 0 chr3 16481731 16481826 -201555332 + MER91B DNA MER1_type 90 188 -2 2161 90 10 13 chr3 16481904 16482216 -201554942 + AluSq SINE Alu 1 311 -2 552 289 64 60 chr3 16483768 16484017 -201553141 - MIR SINE MIR -6 256 7 1994 115 20 3 chr3 16484071 16484366 -201552792 + AluSx SINE Alu 5 304 -8 1612 185 13 7 chr3 16484959 16485262 -201551896 - AluJo SINE Alu -7 305 1 2261 65 0 14 chr3 16485262 16485552 -201551606 - AluY SINE Alu -15 296 11 180 0 0 0 chr3 16485552 16485572 -201551586 + (T)n Simple_repeat Simple_repeat 1 20 0 1568 136 53 40 chr3 16485584 16485885 -201551273 - AluJb SINE Alu -7 305 1 861 199 46 23 chr3 16485911 16486127 -201551031 - L1ME3 LINE L1 -22 6140 5920 297 266 0 0 chr3 16486182 16486261 -201550897 - L1MC4 LINE L1 -1 8041 7963 1198 246 80 12 chr3 16486277 16486614 -201550544 - L1MC4 LINE L1 -329 7713 7354 1749 141 3 46 chr3 16486947 16487314 -201549844 - AluJb SINE Alu 0 353 1 716 184 8 0 chr3 16487347 16487472 -201549686 - FLAM_C SINE Alu -17 126 1 849 213 102 10 chr3 16488329 16488526 -201548632 + MER58C DNA MER1_type 1 215 0 1585 216 162 2 chr3 16489295 16489740 -201547418 - L1ME3A LINE L1 -6 6164 5649 517 202 10 0 chr3 16489789 16489888 -201547270 + FLAM_A SINE Alu 26 125 -17 1383 133 5 0 chr3 16490552 16490747 -201546411 - MLT1A1 LTR MaLR 0 365 170 1460 186 16 11 chr3 16490747 16491046 -201546112 - MLT1A1 LTR MaLR 0 365 4 372 277 117 15 chr3 16491425 16491562 -201545596 + MIR SINE MIR 71 221 -41 1869 117 42 3 chr3 16491709 16491992 -201545166 + AluSg SINE Alu 1 294 -16 273 323 184 14 chr3 16493193 16493475 -201543683 + L2 LINE L2 2648 2977 -337 799 83 19 0 chr3 16493573 16493681 -201543477 - AluSp/q SINE Alu -15 298 189 441 136 0 0 chr3 16493926 16493992 -201543166 + MER5A DNA MER1_type 12 77 -112 2277 84 0 0 chr3 16493993 16494290 -201542868 + AluY SINE Alu 3 299 -12 3983 142 65 80 chr3 16494293 16494631 -201542527 + L1MB7 LINE L1 5323 5665 -519 1833 124 14 17 chr3 16494631 16494921 -201542237 - AluJb SINE Alu -23 289 1 492 18 0 0 chr3 16494921 16494978 -201542180 + (TG)n Simple_repeat Simple_repeat 1 57 0 3983 142 65 80 chr3 16494978 16495321 -201541837 + L1MB7 LINE L1 5664 5992 -192 2236 137 0 20 chr3 16495321 16495665 -201541493 + MER1B DNA MER1_type 1 337 0 3983 142 65 80 chr3 16495665 16495846 -201541312 + L1MB7 LINE L1 5992 6174 -10 1846 147 27 0 chr3 16495861 16496154 -201541004 + AluJo SINE Alu 1 301 -11 285 218 218 0 chr3 16496180 16496258 -201540900 - MIR SINE MIR -81 127 33 2468 62 0 0 chr3 16496279 16496585 -201540573 - AluY SINE Alu -5 306 1 2266 133 96 57 chr3 16496585 16496607 -201540551 - MER41B LTR ERV1 -165 470 450 1935 145 0 10 chr3 16496607 16496918 -201540240 - AluSx SINE Alu -4 308 1 2266 133 96 57 chr3 16496918 16496983 -201540175 - MER41B LTR ERV1 -185 450 389 2141 116 0 3 chr3 16496983 16497285 -201539873 - AluSx SINE Alu -11 301 1 2266 133 96 57 chr3 16497285 16497426 -201539732 - MER41B LTR ERV1 -246 389 255 706 122 7 108 chr3 16497426 16497574 -201539584 - FLAM_C SINE Alu 0 133 1 2266 133 96 57 chr3 16497574 16497792 -201539366 - MER41B LTR ERV1 -380 255 1 728 224 20 57 chr3 16497794 16498007 -201539151 + L1ME2 LINE L1 5951 6174 -10 2137 122 0 3 chr3 16498007 16498318 -201538840 - AluSx SINE Alu -2 310 1 728 224 20 57 chr3 16498318 16498329 -201538829 + L1ME2 LINE L1 6174 6184 0 1640 191 86 19 chr3 16498817 16499188 -201537970 + MSTD LTR MaLR 1 396 0 1722 164 3 0 chr3 16499752 16499768 -201537390 - AluJb SINE Alu -12 300 286 216 0 0 0 chr3 16499768 16499792 -201537366 + (CATTT)n Simple_repeat Simple_repeat 2 25 0 1722 164 3 0 chr3 16499792 16500074 -201537084 - AluJb SINE Alu -26 286 1 450 206 82 106 chr3 16500412 16500582 -201536576 + MIR SINE MIR 87 252 -10 188 338 14 27 chr3 16500596 16500670 -201536488 - L2 LINE L2 -26 3246 3174 225 309 43 0 chr3 16501404 16501498 -201535660 - MARNA DNA Mariner -11 575 478 1992 137 0 0 chr3 16501631 16501924 -201535234 - AluSx SINE Alu -19 293 1 458 287 30 12 chr3 16501982 16502146 -201535012 + MIR SINE MIR 50 216 -46 375 301 68 51 chr3 16502214 16502506 -201534652 - MARNA DNA Mariner -229 357 61 21 0 0 0 chr3 16502693 16502714 -201534444 + AT_rich Low_complexity Low_complexity 1 21 0 244 245 19 0 chr3 16504575 16504628 -201532530 + MLT1L LTR MaLR 2 55 -560 490 264 91 8 chr3 16504637 16504758 -201532400 - L2 LINE L2 0 3313 3183 363 298 46 69 chr3 16504821 16505083 -201532075 + MLT1L LTR MaLR 132 387 -228 198 0 0 0 chr3 16505214 16505236 -201531922 + (T)n Simple_repeat Simple_repeat 1 22 0 896 185 161 108 chr3 16505502 16505788 -201531370 + AluJo SINE Alu 1 301 -1 2003 113 3 13 chr3 16505903 16506204 -201530954 - AluSx SINE Alu -14 298 1 2279 99 0 0 chr3 16506205 16506507 -201530651 - AluSx SINE Alu -10 302 1 2069 108 0 0 chr3 16506659 16506959 -201530199 - AluSc SINE Alu 0 300 1 23 33 0 0 chr3 16506969 16506999 -201530159 + AT_rich Low_complexity Low_complexity 1 30 0 333 267 0 0 chr3 16507116 16507191 -201529967 + MIR3 SINE MIR 111 185 -23 608 122 20 20 chr3 16507547 16507645 -201529513 + MER4A LTR ERV1 1 98 -566 1850 131 9 25 chr3 16507646 16507996 -201529162 + MER4A LTR ERV1 262 664 0 575 91 0 61 chr3 16508201 16508300 -201528858 - AluSp/q SINE Alu -6 307 215 1826 161 50 35 chr3 16508300 16508752 -201528406 + LTR10B LTR ERV1 1 547 0 2435 211 64 32 chr3 16508752 16509510 -201527648 + LTR10B-int LTR ERV1 4 846 -6061 2190 249 11 8 chr3 16509545 16510066 -201527092 + LTR10B-int LTR ERV1 1114 1636 -5013 * 5109 113 33 19 chr3 16510060 16510846 -201526312 + LTR10B-int LTR ERV1 1871 2667 -3982 * 5302 275 57 40 chr3 16510831 16512643 -201524515 + LTR10B-int LTR ERV1 3124 4966 -2819 11068 216 22 29 chr3 16512693 16513118 -201524040 + LTR10B-int LTR ERV1 4229 4656 -1993 2285 55 3 55 chr3 16513118 16513446 -201523712 + AluY SINE Alu 1 311 0 11068 216 22 29 chr3 16513446 16514051 -201523107 + LTR10B-int LTR ERV1 4656 5264 -1385 2363 65 0 23 chr3 16514051 16514359 -201522799 - AluY SINE Alu -10 301 1 11068 216 22 29 chr3 16514359 16515766 -201521392 + LTR10B-int LTR ERV1 5264 6649 0 1799 199 51 27 chr3 16515766 16516216 -201520942 + LTR10B LTR ERV1 1 547 0 1481 123 9 0 chr3 16516216 16516428 -201520730 - AluSx SINE Alu -94 218 5 1233 133 0 33 chr3 16516502 16516712 -201520446 - AluJo SINE Alu -109 203 1 660 181 0 0 chr3 16517319 16517485 -201519673 + (TG)n Simple_repeat Simple_repeat 1 166 0 252 188 0 0 chr3 16517501 16517570 -201519588 + (TG)n Simple_repeat Simple_repeat 1 69 0 242 277 89 10 chr3 16517576 16517677 -201519481 + MIR SINE MIR 84 192 -70 331 229 9 101 chr3 16517989 16518098 -201519060 - MIR SINE MIR -73 135 37 1931 149 0 0 chr3 16518102 16518403 -201518755 - AluSx SINE Alu -11 301 1 932 212 15 30 chr3 16518409 16518612 -201518546 - MER20 DNA MER1_type 0 219 20 444 264 16 24 chr3 16518662 16518787 -201518371 + L3 LINE CR1 1344 1467 -110 261 200 0 0 chr3 16518885 16518930 -201518228 + L2 LINE L2 3251 3295 -18 1745 252 74 13 chr3 16519053 16519501 -201517657 + MLT1J LTR MaLR 37 511 0 212 339 132 23 chr3 16519682 16519856 -201517302 - L2 LINE L2 -214 3058 2866 300 330 19 10 chr3 16520135 16520238 -201516920 + L2 LINE L2 3163 3266 -6 2060 117 3 0 chr3 16520260 16520559 -201516599 + AluSx SINE Alu 1 300 -12 345 267 30 0 chr3 16520743 16520844 -201516314 + L1ME LINE L1 5639 5742 -379 1968 138 68 200 chr3 16520884 16520969 -201516189 - LTR12 LTR ERV1 -136 578 483 2317 77 3 3 chr3 16520969 16521279 -201515879 - AluY SINE Alu -1 310 1 1968 138 68 200 chr3 16521279 16521690 -201515468 - LTR12 LTR ERV1 -231 483 190 2260 77 0 7 chr3 16521690 16521988 -201515170 - AluY SINE Alu -15 296 1 1968 138 68 200 chr3 16521988 16522156 -201515002 - LTR12 LTR ERV1 -524 190 1 560 287 122 47 chr3 16523258 16523512 -201513646 - Charlie8 DNA MER1_type -2142 275 3 4335 187 69 12 chr3 16524031 16525220 -201511938 + L1MB7 LINE L1 4915 6183 -1 315 0 0 0 chr3 16525679 16525714 -201511444 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2391 80 0 6 chr3 16525775 16526086 -201511072 + AluSg SINE Alu 1 309 -1 24 53 0 0 chr3 16527013 16527051 -201510107 + AT_rich Low_complexity Low_complexity 1 38 0 198 167 0 0 chr3 16527110 16527146 -201510012 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 1669 131 54 0 chr3 16527299 16527583 -201509575 - AluSg SINE Alu 0 303 6 2663 245 63 27 chr3 16527603 16528500 -201508658 + L1MD1 LINE L1 16 1088 -5452 2300 82 0 0 chr3 16528523 16528817 -201508341 - AluY SINE Alu -17 294 1 449 220 53 0 chr3 16528823 16528973 -201508185 + L1MD1 LINE L1 1200 1357 -5186 208 203 17 17 chr3 16529388 16529447 -201507711 + GA-rich Low_complexity Low_complexity 2 60 0 2355 184 64 32 chr3 16530288 16530912 -201506246 + L1MD1 LINE L1 1303 1946 -4594 4920 197 41 14 chr3 16530916 16531459 -201505699 + L1MD1 LINE L1 4833 5360 -1393 2166 89 14 0 chr3 16531459 16531750 -201505408 + AluSc SINE Alu 1 295 -14 4920 197 41 14 chr3 16531750 16532948 -201504210 + L1MD1 LINE L1 5360 6753 0 278 182 61 30 chr3 16532983 16533049 -201504109 + MER5B DNA MER1_type 111 178 0 532 183 0 0 chr3 16533111 16533204 -201503954 - MER5A DNA MER1_type -86 103 11 198 344 21 52 chr3 16533207 16533399 -201503759 + MER5A DNA MER1_type 1 186 -3 314 285 49 24 chr3 16533681 16533804 -201503354 + L2 LINE L2 2579 2704 -610 729 255 142 71 chr3 16533812 16534263 -201502895 + MER113 DNA MER1_type? 6 488 -33 269 258 56 11 chr3 16534391 16534480 -201502678 + L2 LINE L2 2871 2963 -309 229 294 29 20 chr3 16534556 16534658 -201502500 + GA-rich Low_complexity Low_complexity 2 104 0 1879 135 24 7 chr3 16534813 16535110 -201502048 - AluSx SINE Alu -10 302 1 271 274 71 12 chr3 16535136 16535212 -201501946 + L2 LINE L2 3181 3261 -52 589 181 8 60 chr3 16535212 16535345 -201501813 - MER5B DNA MER1_type 0 178 53 751 232 20 0 chr3 16535356 16535507 -201501651 - FRAM SINE Alu -22 154 1 278 170 57 0 chr3 16535509 16535562 -201501596 - MER5B DNA MER1_type -121 57 2 196 283 35 97 chr3 16535692 16535805 -201501353 - L2 LINE L2 0 3272 3167 2168 94 3 0 chr3 16536159 16536458 -201500700 + AluSx SINE Alu 1 300 -12 447 239 183 7 chr3 16536612 16536754 -201500404 + L2 LINE L2 2591 2757 -557 2071 116 0 3 chr3 16536838 16537139 -201500019 - AluSx SINE Alu -10 302 3 307 322 43 54 chr3 16537601 16537859 -201499299 + L2 LINE L2 2852 3106 -166 1033 101 7 0 chr3 16537897 16538046 -201499112 + AluSg/x SINE Alu 137 286 -26 563 231 56 0 chr3 16538458 16538601 -201498557 + L1 LINE L1 4134 4284 -1862 388 280 86 23 chr3 16538848 16539023 -201498135 - MIR SINE MIR -49 213 28 2327 59 0 10 chr3 16539025 16539330 -201497828 - AluY SINE Alu -9 302 1 243 354 126 24 chr3 16539469 16539596 -201497562 + L2 LINE L2 3108 3247 -25 218 262 97 87 chr3 16539903 16540006 -201497152 + MIR3 SINE MIR 76 179 -29 2169 81 0 20 chr3 16540235 16540532 -201496626 - AluY SINE Alu -18 293 3 2427 78 0 0 chr3 16540534 16540841 -201496317 - AluSc SINE Alu -2 307 1 2567 150 7 72 chr3 16541670 16542178 -201494980 + L1MB3 LINE L1 5676 6148 -35 2092 108 3 10 chr3 16542178 16542475 -201494683 - AluSx SINE Alu -17 295 1 2567 150 7 72 chr3 16542475 16542507 -201494651 + L1MB3 LINE L1 6148 6181 -2 254 345 44 9 chr3 16543388 16543501 -201493657 - MIR SINE MIR -74 134 18 660 308 24 0 chr3 16543507 16543715 -201493443 - MIR SINE MIR -3 259 47 189 0 0 0 chr3 16543775 16543796 -201493362 + (A)n Simple_repeat Simple_repeat 1 21 0 2084 121 0 10 chr3 16544004 16544317 -201492841 - AluSg SINE Alu 0 310 1 485 206 22 59 chr3 16544323 16544459 -201492699 - L1MB3 LINE L1 -2 6181 6051 2039 106 3 3 chr3 16544560 16544873 -201492285 + AluSg SINE Alu 1 313 0 2133 113 3 3 chr3 16544873 16545184 -201491974 + AluSx SINE Alu 1 311 -1 2289 82 0 10 chr3 16545281 16545584 -201491574 - AluSg SINE Alu -10 300 1 501 305 26 13 chr3 16545652 16545885 -201491273 - L1MC5 LINE L1 -436 7525 7290 3406 156 11 58 chr3 16546000 16546205 -201490953 - L1MB2 LINE L1 -3 6168 5955 2166 98 3 0 chr3 16546205 16546501 -201490657 - AluSx SINE Alu -15 297 1 3406 156 11 58 chr3 16546501 16546522 -201490636 - L1MB2 LINE L1 -216 5955 5935 2018 108 0 40 chr3 16546522 16546847 -201490311 - AluSx SINE Alu 0 312 1 1886 155 0 3 chr3 16546849 16547152 -201490006 - AluSx SINE Alu -10 302 1 3406 156 11 58 chr3 16547152 16547581 -201489577 - L1MB2 LINE L1 -237 5934 5540 454 258 68 32 chr3 16547680 16547870 -201489288 + L1ME4a LINE L1 5717 5913 -208 2365 80 0 3 chr3 16548008 16548319 -201488839 + AluY SINE Alu 1 310 -1 386 278 89 39 chr3 16548808 16548988 -201488170 - MER117 DNA MER1_type -6 191 3 243 0 0 0 chr3 16549123 16549150 -201488008 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 186 281 18 0 chr3 16549910 16549967 -201487191 - MIR SINE MIR -6 256 199 1134 167 144 121 chr3 16549971 16550319 -201486839 + MLT1A1 LTR MaLR 4 359 -6 505 289 232 42 chr3 16550547 16551680 -201485478 - L2 LINE L2 -642 2672 1325 217 286 121 36 chr3 16551803 16551943 -201485215 + L3 LINE CR1 1018 1169 -408 2142 82 0 33 chr3 16552141 16552447 -201484711 + AluY SINE Alu 9 304 -7 490 301 100 18 chr3 16552629 16552908 -201484250 + L2 LINE L2 2460 2761 -553 481 209 128 36 chr3 16552951 16553166 -201483992 - MIR SINE MIR -2 260 6 628 301 119 39 chr3 16553198 16553584 -201483574 + L2 LINE L2 2844 3260 -12 186 281 157 11 chr3 16553855 16553944 -201483214 + L2 LINE L2 2998 3099 -214 323 248 119 10 chr3 16554025 16554126 -201483032 + L2 LINE L2 3190 3301 -12 469 234 63 18 chr3 16554128 16554239 -201482919 - L2 LINE L2 0 3313 3198 306 314 177 24 chr3 16554259 16554507 -201482651 + L3 LINE CR1 1203 1488 -89 267 245 185 40 chr3 16554901 16555052 -201482106 - MIR SINE MIR -68 194 22 190 205 26 0 chr3 16555907 16555946 -201481212 - L2 LINE L2 -39 3274 3235 296 284 181 16 chr3 16556049 16556176 -201480982 - MIR SINE MIR -36 226 79 2675 16 0 3 chr3 16556272 16556584 -201480574 + AluYa5 SINE Alu 1 311 0 1433 231 71 37 chr3 16556630 16557120 -201480038 + MLT1E2 LTR MaLR 1 505 0 291 255 2 0 chr3 16557120 16557204 -201479954 - MIR SINE MIR -80 128 43 463 264 76 100 chr3 16557307 16557557 -201479601 + MIR SINE MIR 2 245 -17 291 235 183 11 chr3 16557627 16557780 -201479378 - MIR SINE MIR -63 145 4 182 306 129 20 chr3 16557964 16558111 -201479047 - L2 LINE L2 -5 3267 3105 880 242 175 25 chr3 16558244 16558804 -201478354 - L2 LINE L2 -166 3147 2501 646 137 0 0 chr3 16559033 16559128 -201478030 - L1MC1 LINE L1 -17 6316 6222 1857 47 0 8 chr3 16560437 16560671 -201476487 - MER11A LTR ERVK -1034 232 1 256 296 35 61 chr3 16560723 16560838 -201476320 - L2 LINE L2 -1 3271 3160 431 311 85 85 chr3 16560858 16561199 -201475959 - L2 LINE L2 -1 3271 2931 394 253 50 33 chr3 16561356 16561531 -201475627 + MER20B DNA MER1_type 43 213 -6 2155 103 0 17 chr3 16561597 16561898 -201475260 + AluSg SINE Alu 1 296 -14 2204 94 0 0 chr3 16561898 16562195 -201474963 + AluY SINE Alu 1 297 -14 193 29 29 29 chr3 16562210 16562245 -201474913 + (GAA)n Simple_repeat Simple_repeat 3 37 0 281 333 64 30 chr3 16562515 16562656 -201474502 + MIR SINE MIR 1 147 -66 1428 188 14 11 chr3 16562658 16562935 -201474223 + AluSx SINE Alu 18 295 -17 225 0 0 0 chr3 16562935 16562960 -201474198 + (TG)n Simple_repeat Simple_repeat 2 26 0 976 180 0 0 chr3 16563111 16563272 -201473886 - FRAM SINE Alu -14 162 2 187 333 83 0 chr3 16563901 16563985 -201473173 - MIR SINE MIR -116 146 56 400 266 50 14 chr3 16564442 16564581 -201472577 - L2 LINE L2 -12 3301 3158 202 246 33 16 chr3 16564631 16564692 -201472466 - MER5A DNA MER1_type 0 189 128 2085 114 0 7 chr3 16564728 16565027 -201472131 - AluY SINE Alu -14 297 1 309 276 158 16 chr3 16565397 16565524 -201471634 + MER5B DNA MER1_type 34 178 0 211 172 62 109 chr3 16565525 16565589 -201471569 + MIR3 SINE MIR 105 165 -43 204 278 68 115 chr3 16566226 16566478 -201470680 - L2 LINE L2 -610 2704 2465 184 129 0 0 chr3 16566691 16566722 -201470436 + L2 LINE L2 3225 3255 -17 1513 154 111 64 chr3 16566856 16566947 -201470211 + L1M4 LINE L1 5197 5282 -892 2186 67 3 27 chr3 16566947 16567245 -201469913 - AluY SINE Alu -20 291 1 1513 154 111 64 chr3 16567245 16567586 -201469572 + L1M4 LINE L1 5282 5667 -507 190 205 26 0 chr3 16568520 16568559 -201468599 - L2 LINE L2 -39 3274 3235 296 284 181 16 chr3 16568662 16568789 -201468369 - MIR SINE MIR -36 226 79 2692 13 0 3 chr3 16568885 16569196 -201467962 + AluYa5 SINE Alu 1 310 -1 1997 219 46 40 chr3 16569238 16569474 -201467684 - MER92B LTR ERV1 -58 578 345 1241 179 88 107 chr3 16569474 16569931 -201467227 + LTR7 LTR ERV1 1 448 -2 1997 219 46 40 chr3 16569931 16570215 -201466943 - MER92B LTR ERV1 -291 345 55 1878 153 0 6 chr3 16570217 16570530 -201466628 - AluJo SINE Alu 0 312 2 2414 81 0 0 chr3 16570535 16570844 -201466314 - AluY SINE Alu -2 309 1 2207 110 0 3 chr3 16570844 16571154 -201466004 - AluSq SINE Alu -4 309 1 3223 151 8 6 chr3 16571177 16571693 -201465465 + MER41B LTR ERV1 1 517 -118 923 101 7 0 chr3 16571694 16571833 -201465325 - AluSg/x SINE Alu 0 312 173 583 144 0 41 chr3 16571842 16571939 -201465219 - AluSg/x SINE Alu -112 200 108 2056 117 7 3 chr3 16571939 16572247 -201464911 - AluSx SINE Alu -3 309 1 591 144 48 0 chr3 16572247 16572351 -201464807 + MER41B LTR ERV1 515 623 -12 2073 114 27 0 chr3 16572351 16572375 -201464783 - AluSx SINE Alu -6 306 284 360 0 0 0 chr3 16572375 16572415 -201464743 + (TG)n Simple_repeat Simple_repeat 1 40 0 300 27 0 0 chr3 16572414 16572451 -201464707 + (GA)n Simple_repeat Simple_repeat 1 37 0 * 2073 114 27 0 chr3 16572415 16572724 -201464434 - AluSx SINE Alu -28 284 1 264 240 0 0 chr3 16572742 16572792 -201464366 - MER92B LTR ERV1 -586 50 1 290 217 152 0 chr3 16572970 16573062 -201464096 + L1ME3A LINE L1 5848 5953 -217 851 98 8 0 chr3 16573070 16573193 -201463965 - MER41B LTR ERV1 0 635 512 2039 112 3 3 chr3 16573194 16573497 -201463661 + AluSx SINE Alu 1 303 -9 388 280 86 23 chr3 16573499 16573674 -201463484 + MIR SINE MIR 28 213 -49 563 231 56 0 chr3 16573921 16574064 -201463094 - L1 LINE L1 -1862 4284 4134 1033 101 7 0 chr3 16574476 16574625 -201462533 - AluSg/x SINE Alu -26 284 135 307 322 43 54 chr3 16574663 16574921 -201462237 - L2 LINE L2 -166 3106 2852 2008 126 0 3 chr3 16575380 16575682 -201461476 + AluSx SINE Alu 1 301 -11 447 239 183 7 chr3 16575766 16575908 -201461250 - L2 LINE L2 -557 2757 2591 2148 105 0 0 chr3 16576067 16576362 -201460796 - AluSx SINE Alu -17 295 1 1671 191 112 32 chr3 16576362 16576801 -201460357 + L1MB7 LINE L1 5711 6184 0 487 308 91 0 chr3 16576803 16576946 -201460212 - MER91A DNA MER1_type -40 156 1 298 247 43 21 chr3 16577466 16577559 -201459599 + MIR SINE MIR 48 142 -120 461 231 0 28 chr3 16577949 16578057 -201459101 + MIR SINE MIR 87 191 -71 2229 202 81 16 chr3 16578108 16578614 -201458544 - MLT1F LTR MaLR 0 542 4 253 284 25 12 chr3 16578659 16578740 -201458418 - MIR SINE MIR -179 83 2 257 295 13 26 chr3 16578846 16578924 -201458234 - MIR3 SINE MIR -117 91 15 395 274 32 24 chr3 16578996 16579120 -201458038 + MIR SINE MIR 18 142 -66 980 242 92 84 chr3 16579148 16579416 -201457742 - L2 LINE L2 -5 3308 3044 1991 132 0 3 chr3 16579416 16579711 -201457447 + AluSg SINE Alu 1 294 -16 980 242 92 84 chr3 16579711 16580095 -201457063 - L2 LINE L2 -269 3044 2649 360 155 0 0 chr3 16580571 16580642 -201456516 + A-rich Low_complexity Low_complexity 1 71 0 249 244 162 41 chr3 16581708 16581853 -201455305 + MIR SINE MIR 35 194 -63 306 314 177 24 chr3 16582247 16582495 -201454663 - L3 LINE CR1 -89 1488 1203 469 234 63 18 chr3 16582515 16582626 -201454532 + L2 LINE L2 3198 3313 0 323 248 119 10 chr3 16582628 16582729 -201454429 - L2 LINE L2 -12 3301 3190 377 322 125 56 chr3 16583169 16583560 -201453598 - L2 LINE L2 -11 3261 2844 481 209 128 36 chr3 16583592 16583807 -201453351 + MIR SINE MIR 6 260 -2 490 301 100 18 chr3 16583850 16584129 -201453029 - L2 LINE L2 -553 2761 2460 2167 78 0 33 chr3 16584311 16584617 -201452541 - AluY SINE Alu -7 304 9 208 293 121 36 chr3 16584815 16584955 -201452203 - L3 LINE CR1 -408 1169 1018 400 266 50 14 chr3 16585469 16585608 -201451550 + L2 LINE L2 3158 3301 -12 187 333 83 0 chr3 16586065 16586149 -201451009 + MIR SINE MIR 56 146 -116 976 180 0 0 chr3 16586773 16586934 -201450224 + FRAM SINE Alu 2 162 -14 225 0 0 0 chr3 16587085 16587110 -201450048 + (CA)n Simple_repeat Simple_repeat 2 26 0 1160 224 14 18 chr3 16587110 16587387 -201449771 - AluSg SINE Alu -17 293 18 281 333 64 30 chr3 16587389 16587530 -201449628 - MIR SINE MIR -66 142 1 506 277 70 76 chr3 16587553 16587896 -201449262 + L2 LINE L2 2921 3261 -11 1134 247 125 23 chr3 16588019 16588551 -201448607 + MLT1L LTR MaLR 1 612 -3 340 335 178 4 chr3 16588643 16588873 -201448285 + L2 LINE L2 3002 3271 -1 341 250 0 0 chr3 16588962 16589030 -201448128 + MIR3 SINE MIR 93 160 -48 437 267 10 0 chr3 16589863 16589964 -201447194 + MIR SINE MIR 54 155 -107 258 206 0 0 chr3 16590103 16590176 -201446982 + (CA)n Simple_repeat Simple_repeat 2 74 0 1233 133 0 33 chr3 16590783 16590993 -201446165 + AluJo SINE Alu 1 203 -109 2266 104 0 3 chr3 16591067 16591375 -201445783 + AluSq SINE Alu 5 311 -2 605 168 16 0 chr3 16592145 16592270 -201444888 + CT-rich Low_complexity Low_complexity 2 128 0 1779 200 19 81 chr3 16592270 16592902 -201444256 - L1M4 LINE L1 -1898 4248 3681 * 4459 145 17 36 chr3 16592898 16592978 -201444180 - L1MA8 LINE L1 -260 6031 5951 2048 113 16 19 chr3 16592978 16593289 -201443869 - AluSg SINE Alu 0 310 1 4459 145 17 36 chr3 16593289 16593635 -201443523 - L1MA8 LINE L1 -340 5951 5600 1824 134 0 10 chr3 16593635 16593955 -201443203 - AluY SINE Alu 0 311 1 4459 145 17 36 chr3 16593955 16594244 -201442914 - L1MA8 LINE L1 -691 5600 5331 2228 100 0 13 chr3 16594244 16594554 -201442604 - AluY SINE Alu -5 306 1 4459 145 17 36 chr3 16594554 16594786 -201442372 - L1MA8 LINE L1 -960 5331 5096 625 71 0 0 chr3 16594787 16594871 -201442287 + MLT2A2 LTR ERVL 1 84 -369 * 1010 198 56 34 chr3 16594868 16595186 -201441972 + MLT2B3 LTR ERVL 230 554 0 4663 154 82 35 chr3 16595229 16595727 -201441431 - L1MA8 LINE L1 -1158 4988 4515 849 213 6 12 chr3 16595727 16595887 -201441271 - FAM SINE Alu -16 159 1 4663 154 82 35 chr3 16595887 16596422 -201440736 - L1MA8 LINE L1 -1631 4515 3906 241 200 0 17 chr3 16596394 16596454 -201440704 - L1M4 LINE L1 -2446 3700 3642 * 3586 214 43 8 chr3 16596465 16597421 -201439737 - L1M4 LINE L1 -2812 3334 2346 * 4125 234 49 92 chr3 16597414 16597934 -201439224 - L1M4 LINE L1 -1099 5047 4506 233 185 0 19 chr3 16597934 16597988 -201439170 - HSMAR1 DNA Mariner 0 1287 1235 329 43 22 0 chr3 16597997 16598043 -201439115 + MADE1 DNA Mariner 33 79 -1 4125 234 49 92 chr3 16598043 16598116 -201439042 - L1M4 LINE L1 -1648 4498 4423 1534 176 10 23 chr3 16598116 16598417 -201438741 + AluJo SINE Alu 1 297 -15 4125 234 49 92 chr3 16598417 16599805 -201437353 - L1M4 LINE L1 -1723 4423 3047 1812 243 53 13 chr3 16599836 16600305 -201436853 - L1ME1 LINE L1 -84 6082 5595 2239 85 0 3 chr3 16600305 16600600 -201436558 + AluSg SINE Alu 3 296 -14 244 128 85 0 chr3 16600600 16600647 -201436511 + L1MB3 LINE L1 6132 6182 -1 196 375 45 0 chr3 16600971 16601059 -201436099 + L2 LINE L2 2982 3073 -199 522 246 23 0 chr3 16601070 16601200 -201435958 - MER94 DNA DNA -1 133 1 321 276 13 0 chr3 16601268 16601344 -201435814 + L2 LINE L2 3163 3239 -33 318 257 43 0 chr3 16601362 16601432 -201435726 + LTR16B LTR ERVL 386 458 -6 294 29 0 0 chr3 16601665 16601700 -201435458 + (TC)n Simple_repeat Simple_repeat 2 36 0 592 250 79 7 chr3 16602010 16602162 -201434996 - MER5B DNA MER1_type -1 177 15 4162 33 19 0 chr3 16602501 16602982 -201434176 + LTR2B LTR ERV1 1 490 0 241 322 22 11 chr3 16603029 16603119 -201434039 + L2 LINE L2 3173 3263 -9 234 0 0 0 chr3 16604191 16604217 -201432941 + (TTA)n Simple_repeat Simple_repeat 2 27 0 26 30 0 0 chr3 16604928 16604961 -201432197 + AT_rich Low_complexity Low_complexity 1 33 0 394 275 96 18 chr3 16607951 16608118 -201429040 + MER34 LTR ERV1 306 485 -57 211 164 164 36 chr3 16608307 16608362 -201428796 + L2 LINE L2 3168 3229 -43 455 243 221 7 chr3 16608561 16608699 -201428459 + MER5B DNA MER1_type 1 168 -10 419 238 94 62 chr3 16608699 16608859 -201428299 + MER5A DNA MER1_type 2 166 -23 405 226 0 57 chr3 16608785 16608891 -201428267 - MER5A DNA MER1_type -87 102 3 * 228 282 0 0 chr3 16609029 16609095 -201428063 - MIR SINE MIR -67 141 87 198 299 0 60 chr3 16609113 16609180 -201427978 - L2 LINE L2 -3 3269 3207 601 257 69 47 chr3 16609547 16609823 -201427335 + MLT1L LTR MaLR 1 282 -333 207 100 0 0 chr3 16609858 16609888 -201427270 + (TGGA)n Simple_repeat Simple_repeat 3 32 0 376 280 0 9 chr3 16610221 16610328 -201426830 - AluY SINE Alu -194 107 2 775 235 73 14 chr3 16610498 16610782 -201426376 + LTR16C LTR ERVL 157 484 -7 706 197 45 0 chr3 16610817 16610949 -201426209 - MIR SINE MIR -107 155 18 432 248 66 25 chr3 16610967 16611088 -201426070 + MIR SINE MIR 124 249 -13 417 211 0 0 chr3 16611869 16611992 -201425166 + (TCCA)n Simple_repeat Simple_repeat 4 126 0 368 395 0 7 chr3 16612009 16612156 -201425002 - L2 LINE L2 -18 3254 3109 632 241 47 65 chr3 16612713 16612945 -201424213 + MIR SINE MIR 1 228 -34 * 879 276 16 12 chr3 16612931 16613174 -201423984 - MIR SINE MIR 0 262 19 301 184 87 97 chr3 16614345 16614448 -201422710 - L1ME4a LINE L1 -9 6112 6011 328 281 21 21 chr3 16614490 16614586 -201422572 + MIR SINE MIR 86 181 -81 558 299 21 46 chr3 16614656 16614981 -201422177 - L1ME4a LINE L1 -194 5927 5611 2165 90 7 3 chr3 16614986 16615286 -201421872 + AluSx SINE Alu 1 301 -11 320 158 118 191 chr3 16615298 16615450 -201421708 + MLT1H LTR MaLR 409 549 0 774 189 223 55 chr3 16615489 16615555 -201421603 + MER69B DNA AcHobo 78 132 -2394 2170 169 39 7 chr3 16615555 16615986 -201421172 - L1MB7 LINE L1 0 6184 5740 774 189 223 55 chr3 16615986 16616157 -201421001 + MER69B DNA AcHobo 132 355 -2171 811 161 0 2 chr3 16616166 16616366 -201420792 + MSTC LTR MaLR 3 249 -179 * 2186 139 71 0 chr3 16616364 16616703 -201420455 + MSTC LTR MaLR 66 428 0 2335 245 77 38 chr3 16616709 16617506 -201419652 + MER69B DNA AcHobo 368 1195 -31 533 265 23 0 chr3 16618151 16618283 -201418875 - MER58B DNA MER1_type -4 337 203 272 242 37 0 chr3 16618620 16618707 -201418451 - MER58 DNA MER1_type -103 238 27 461 245 9 9 chr3 16618717 16618823 -201418335 + L2 LINE L2 3150 3255 -17 186 244 0 0 chr3 16619215 16619260 -201417898 - L2 LINE L2 -1 3312 3268 2347 106 0 0 chr3 16619388 16619689 -201417469 - AluSg SINE Alu -6 304 4 2318 84 0 10 chr3 16620409 16620705 -201416453 + AluY SINE Alu 4 296 -15 1161 136 0 0 chr3 16620706 16620861 -201416297 + AluSg/x SINE Alu 134 288 -24 213 302 94 47 chr3 16622231 16622423 -201414735 + L2 LINE L2 3019 3219 -94 831 226 11 5 chr3 16622470 16622656 -201414502 + MER72 LTR ERV1 1 187 -535 258 105 0 0 chr3 16622823 16622861 -201414297 + (A)n Simple_repeat Simple_repeat 1 38 0 343 167 0 30 chr3 16623426 16623492 -201413666 - AluJ/FRAM SINE Alu -12 290 227 403 186 0 0 chr3 16623512 16623582 -201413576 - LTR12 LTR ERV1 -290 424 355 302 260 0 0 chr3 16623582 16623659 -201413499 - LTR30 LTR ERV1 -102 620 544 1127 141 34 93 chr3 16623661 16623952 -201413206 - LTR12 LTR ERV1 -440 274 1 559 189 0 0 chr3 16623958 16624048 -201413110 - FRAM/FAM SINE Alu -92 84 1 297 0 0 0 chr3 16624057 16624090 -201413068 + (TA)n Simple_repeat Simple_repeat 2 34 0 1944 177 71 0 chr3 16624198 16624593 -201412565 + LOR1b LTR ERV1 1 423 -38 11998 112 65 21 chr3 16624593 16624825 -201412333 + LOR1b-int LTR ERV1 32 252 -7868 2183 122 14 0 chr3 16624825 16625121 -201412037 - AluSg SINE Alu -10 300 1 11998 112 65 21 chr3 16625121 16625255 -201411903 + LOR1b-int LTR ERV1 252 379 -7741 279 0 0 0 chr3 16625255 16625286 -201411872 + (TG)n Simple_repeat Simple_repeat 2 32 0 11998 112 65 21 chr3 16625286 16625856 -201411302 + LOR1b-int LTR ERV1 379 922 -7198 2259 94 3 0 chr3 16625856 16626144 -201411014 + AluSx SINE Alu 1 289 -23 11998 112 65 21 chr3 16626144 16627274 -201409884 + LOR1b-int LTR ERV1 922 2201 -5919 2224 205 138 65 chr3 16627274 16628044 -201409114 + LTR1B LTR ERV1 1 826 0 11998 112 65 21 chr3 16628044 16628121 -201409037 + LOR1b-int LTR ERV1 2201 2273 -5847 7432 135 23 40 chr3 16628119 16628333 -201408825 + LOR1b-int LTR ERV1 2376 2592 -5528 * 2284 100 23 3 chr3 16628333 16628634 -201408524 - AluSx SINE Alu -3 309 3 7432 135 23 40 chr3 16628634 16629819 -201407339 + LOR1b-int LTR ERV1 2592 3751 -4369 6421 143 128 102 chr3 16629822 16631474 -201405684 - pTR5 LTR ERV1 0 2438 743 4915 129 39 1 chr3 16631476 16632282 -201404876 + LOR1b-int LTR ERV1 3754 4589 -3531 2488 71 0 3 chr3 16632282 16632579 -201404579 - AluY SINE Alu -15 296 1 750 235 71 6 chr3 16633656 16633826 -201403332 - MIR SINE MIR -81 181 1 397 313 38 25 chr3 16634558 16634718 -201402440 - MIR SINE MIR -67 195 34 227 287 191 0 chr3 16634718 16634812 -201402346 + MIR SINE MIR 134 245 -17 274 212 78 57 chr3 16635186 16635289 -201401869 - MIR SINE MIR -76 132 39 1096 253 83 46 chr3 16637217 16637712 -201399446 + L2 LINE L2 2488 2999 -314 261 0 0 0 chr3 16637725 16637754 -201399404 + (T)n Simple_repeat Simple_repeat 1 29 0 679 303 55 76 chr3 16638174 16638517 -201398641 + L2 LINE L2 2933 3268 -4 256 150 0 0 chr3 16638617 16638657 -201398501 + L2 LINE L2 3230 3269 -3 702 253 124 0 chr3 16639696 16639898 -201397260 - MIR SINE MIR 0 262 36 23 33 0 0 chr3 16641184 16641214 -201395944 + AT_rich Low_complexity Low_complexity 1 30 0 242 239 43 141 chr3 16641974 16642137 -201395021 - MIR SINE MIR -112 150 4 188 282 39 78 chr3 16642231 16642334 -201394824 + MER5A DNA MER1_type 1 99 -90 * 405 263 88 39 chr3 16642323 16642427 -201394731 - MIR SINE MIR -62 146 69 2233 55 42 28 chr3 16642427 16642716 -201394442 + AluY SINE Alu 1 293 -18 405 263 88 39 chr3 16642716 16642785 -201394373 - MIR SINE MIR -139 69 5 274 212 78 57 chr3 16644497 16644600 -201392558 + MIR SINE MIR 39 132 -76 227 287 191 0 chr3 16644974 16645068 -201392090 - MIR SINE MIR -17 245 134 625 256 0 0 chr3 16645068 16645201 -201391957 + MIR SINE MIR 34 166 -96 2784 140 25 2 chr3 16645201 16645687 -201391471 + L1MB2 LINE L1 5586 6082 -89 261 229 0 0 chr3 16645691 16645739 -201391419 + Tigger3(Golem) DNA MER2_type 2982 3029 0 357 211 56 0 chr3 16645772 16645862 -201391296 + L1MB2 LINE L1 6076 6170 -1 432 215 32 0 chr3 16645883 16645976 -201391182 + MIR SINE MIR 157 252 -10 477 260 132 0 chr3 16646077 16646208 -201390950 + MIR SINE MIR 38 182 -62 277 198 74 33 chr3 16646469 16646539 -201390619 - LTR33 LTR ERVL -2 519 440 2165 158 18 0 chr3 16646539 16646880 -201390278 + MER7A DNA MER2_type 1 345 -1 277 198 74 33 chr3 16646880 16646930 -201390228 - LTR33 LTR ERVL -81 440 394 784 232 96 16 chr3 16646977 16647227 -201389931 - LTR33 LTR ERVL -251 270 1 264 224 60 15 chr3 16647705 16647772 -201389386 - L2 LINE L2 -3 3269 3200 450 283 114 27 chr3 16648008 16648227 -201388931 - L2 LINE L2 -508 2806 2569 520 297 0 7 chr3 16648682 16648830 -201388328 + MIR SINE MIR 91 237 -25 255 306 71 20 chr3 16648898 16648996 -201388162 - L2 LINE L2 -9 3263 3161 685 286 24 14 chr3 16649007 16649217 -201387941 + MIR SINE MIR 6 217 -45 763 263 125 4 chr3 16649752 16649984 -201387174 + MIR SINE MIR 2 261 -1 300 333 12 0 chr3 16650091 16650172 -201386986 - L2 LINE L2 -4 3268 3187 245 347 16 40 chr3 16650249 16650373 -201386785 - MIR SINE MIR -69 139 19 547 282 119 36 chr3 16650500 16650911 -201386247 + L1ME LINE L1 5374 5818 -303 384 243 117 9 chr3 16651110 16651221 -201385937 - L2 LINE L2 0 3313 3191 731 262 89 13 chr3 16652570 16652795 -201384363 - MIR SINE MIR -18 244 3 6777 106 47 19 chr3 16652865 16653907 -201383251 - MER11C LTR ERVK 0 1071 1 364 318 70 16 chr3 16654394 16654652 -201382506 + L2 LINE L2 2376 2647 -667 232 322 35 49 chr3 16654628 16654771 -201382387 + MIR SINE MIR 69 209 -53 * 489 305 32 7 chr3 16655077 16655231 -201381927 - MIR3 SINE MIR -14 194 37 398 328 144 13 chr3 16655574 16655776 -201381382 - L2 LINE L2 -49 3223 2986 2245 91 0 77 chr3 16655776 16656115 -201381043 + AluSq SINE Alu 1 313 0 398 328 144 13 chr3 16656115 16656141 -201381017 - L2 LINE L2 -286 2986 2965 900 293 154 47 chr3 16656394 16656860 -201380298 - L2 LINE L2 0 3313 2784 411 68 0 0 chr3 16656860 16656919 -201380239 + (GGATG)n Simple_repeat Simple_repeat 2 60 0 900 293 154 47 chr3 16656919 16657030 -201380128 - L2 LINE L2 -529 2784 2686 210 71 0 0 chr3 16657412 16657440 -201379718 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 3686 118 43 42 chr3 16657914 16658042 -201379116 - L1PB4 LINE L1 0 6156 6030 2158 124 10 3 chr3 16658042 16658348 -201378810 - AluSc SINE Alu 0 309 2 3686 118 43 42 chr3 16658348 16658839 -201378319 - L1PB4 LINE L1 -126 6030 5536 2393 88 0 0 chr3 16659006 16659344 -201377814 - AluSq SINE Alu 0 313 2 531 224 11 10 chr3 16659597 16659731 -201377427 - MIR SINE MIR -57 151 15 337 246 160 46 chr3 16659985 16660160 -201376998 - MIR SINE MIR -27 235 41 288 297 195 0 chr3 16660274 16660392 -201376766 + MER91A DNA MER1_type 20 160 -36 296 227 45 0 chr3 16660425 16660491 -201376667 + MER91A DNA MER1_type 128 196 0 183 80 0 0 chr3 16660599 16660624 -201376534 + (TCCCC)n Simple_repeat Simple_repeat 3 27 0 535 270 48 118 chr3 16660853 16661387 -201375771 - L2 LINE L2 -85 3187 2686 1245 264 88 37 chr3 16662101 16662891 -201374267 - L2 LINE L2 -1 3312 2470 306 287 28 0 chr3 16665669 16665777 -201371381 - L1MC4 LINE L1 -4 8038 7928 371 259 45 0 chr3 16665788 16665900 -201371258 - MLT2E LTR ERVL -2 626 510 899 254 88 62 chr3 16665903 16666138 -201371020 + L2 LINE L2 2950 3198 -115 2336 103 3 0 chr3 16666138 16666449 -201370709 + AluSx SINE Alu 1 312 0 899 254 88 62 chr3 16666449 16666567 -201370591 + L2 LINE L2 3198 3312 -1 225 159 0 0 chr3 16666574 16666618 -201370540 + (TGGA)n Simple_repeat Simple_repeat 4 47 0 592 256 174 19 chr3 16666649 16666856 -201370302 + MIR SINE MIR 24 262 0 662 312 48 21 chr3 16667390 16667737 -201369421 - L1ME LINE L1 -442 5679 5318 1779 178 0 14 chr3 16667737 16668030 -201369128 - AluJo SINE Alu -23 289 1 662 312 48 21 chr3 16668030 16668096 -201369062 - L1ME LINE L1 -803 5318 5255 300 240 42 42 chr3 16668108 16668204 -201368954 + L1MCa LINE L1 1969 2064 -4362 * 301 318 47 0 chr3 16668154 16668239 -201368919 - L1MC4 LINE L1 -1340 6702 6614 414 0 50 0 chr3 16668244 16668331 -201368827 + (TAGA)n Simple_repeat Simple_repeat 1 91 0 323 263 71 0 chr3 16668477 16668576 -201368582 + MIR SINE MIR 138 243 -19 1543 194 3 24 chr3 16669063 16669351 -201367807 + AluJo SINE Alu 1 282 -30 1227 195 4 30 chr3 16669115 16669352 -201367806 + AluJo SINE Alu 53 312 0 229 35 0 0 chr3 16669352 16669381 -201367777 + (CAAAA)n Simple_repeat Simple_repeat 2 140 0 505 254 102 83 chr3 16669671 16669751 -201367407 - LTR16B LTR ERVL -1 463 386 1058 137 0 0 chr3 16669751 16669919 -201367239 - L1MA4 LINE L1 -5 6295 6128 505 254 102 83 chr3 16669919 16670259 -201366899 - LTR16B LTR ERVL -78 386 35 391 287 77 41 chr3 16670303 16670402 -201366756 - MIR SINE MIR -13 249 155 2361 144 95 0 chr3 16670402 16670791 -201366367 + MSTB LTR MaLR 1 426 0 391 287 77 41 chr3 16670791 16670886 -201366272 - MIR SINE MIR -107 155 48 857 245 89 57 chr3 16671042 16671523 -201365635 - LTR8A LTR ERV1 0 727 108 337 236 85 47 chr3 16671667 16671773 -201365385 - LTR8 LTR ERV1 -581 110 1 318 281 43 58 chr3 16671964 16672103 -201365055 + MER5A DNA MER1_type 29 165 -24 1858 159 45 109 chr3 16672155 16672537 -201364621 + L1MC4 LINE L1 7513 7918 -124 2359 107 0 0 chr3 16672537 16672836 -201364322 + AluSx SINE Alu 1 299 -13 1858 159 45 109 chr3 16672836 16672974 -201364184 + L1MC4 LINE L1 7918 7998 -44 2046 145 0 0 chr3 16672974 16673282 -201363876 - AluSx SINE Alu 0 308 1 1858 159 45 109 chr3 16673282 16673318 -201363840 + L1MC4 LINE L1 7998 8035 -7 304 261 252 37 chr3 16673475 16673693 -201363465 + L2 LINE L2 2971 3235 -37 399 304 60 129 chr3 16674054 16674558 -201362600 + L2 LINE L2 2804 3272 0 387 232 13 7 chr3 16674584 16674735 -201362423 + (TGGA)n Simple_repeat Simple_repeat 1 152 0 198 143 0 0 chr3 16674770 16674805 -201362353 + (TGGA)n Simple_repeat Simple_repeat 2 36 0 719 191 6 0 chr3 16674835 16674997 -201362161 + (TGGA)n Simple_repeat Simple_repeat 1 163 0 228 163 0 0 chr3 16675017 16675060 -201362098 + (TGGA)n Simple_repeat Simple_repeat 1 43 0 229 233 12 12 chr3 16675178 16675264 -201361894 + (TGGA)n Simple_repeat Simple_repeat 4 89 0 2156 118 21 0 chr3 16675427 16675716 -201361442 + AluSx SINE Alu 1 295 -17 274 212 78 57 chr3 16677497 16677600 -201359558 + MIR SINE MIR 39 132 -76 201 298 191 0 chr3 16677974 16678068 -201359090 - MIR SINE MIR -17 245 134 651 248 0 0 chr3 16678068 16678201 -201358957 + MIR SINE MIR 34 166 -96 2847 139 18 2 chr3 16678201 16678690 -201358468 + L1MB2 LINE L1 5586 6082 -89 261 229 0 0 chr3 16678694 16678742 -201358416 + Tigger3(Golem) DNA MER2_type 2981 3028 -1 331 222 56 0 chr3 16678775 16678865 -201358293 + L1MB2 LINE L1 6076 6170 -1 432 215 32 0 chr3 16678886 16678979 -201358179 + MIR SINE MIR 157 252 -10 487 252 132 0 chr3 16679080 16679211 -201357947 + MIR SINE MIR 38 182 -62 277 198 74 33 chr3 16679472 16679542 -201357616 - LTR33 LTR ERVL -2 519 440 2165 158 18 0 chr3 16679542 16679883 -201357275 + MER7A DNA MER2_type 1 345 -1 277 198 74 33 chr3 16679883 16679933 -201357225 - LTR33 LTR ERVL -81 440 394 761 236 96 16 chr3 16679980 16680230 -201356928 - LTR33 LTR ERVL -251 270 1 264 224 60 15 chr3 16680708 16680775 -201356383 - L2 LINE L2 -3 3269 3200 450 283 114 27 chr3 16681011 16681230 -201355928 - L2 LINE L2 -508 2806 2569 520 297 0 7 chr3 16681685 16681833 -201355325 + MIR SINE MIR 91 237 -25 255 306 71 20 chr3 16681901 16681999 -201355159 - L2 LINE L2 -9 3263 3161 685 286 24 14 chr3 16682010 16682220 -201354938 + MIR SINE MIR 6 217 -45 763 263 125 4 chr3 16682755 16682987 -201354171 + MIR SINE MIR 2 261 -1 300 333 12 0 chr3 16683094 16683175 -201353983 - L2 LINE L2 -4 3268 3187 245 347 16 40 chr3 16683252 16683376 -201353782 - MIR SINE MIR -69 139 19 547 282 119 36 chr3 16683503 16683914 -201353244 + L1ME LINE L1 5374 5818 -303 384 243 117 9 chr3 16684113 16684224 -201352934 - L2 LINE L2 0 3313 3191 731 262 89 13 chr3 16685573 16685798 -201351360 - MIR SINE MIR -18 244 3 6782 108 45 16 chr3 16685868 16686909 -201350249 - MER11C LTR ERVK 0 1071 1 342 335 50 6 chr3 16687922 16688104 -201349054 + L2 LINE L2 2655 2844 -470 613 191 13 40 chr3 16688147 16688299 -201348859 - L1M4 LINE L1 -1488 4658 4511 508 264 61 112 chr3 16688381 16688892 -201348266 + MER34 LTR ERV1 1 485 -57 214 164 164 36 chr3 16689081 16689136 -201348022 + L2 LINE L2 3168 3229 -43 385 279 39 10 chr3 16689368 16689470 -201347688 + MER5B DNA MER1_type 64 168 -10 427 250 62 94 chr3 16689470 16689662 -201347496 - MER5A DNA MER1_type -1 188 3 232 282 0 0 chr3 16689799 16689865 -201347293 - MIR SINE MIR -67 141 87 198 299 0 60 chr3 16689883 16689950 -201347208 - L2 LINE L2 -3 3269 3207 341 277 66 69 chr3 16690317 16690620 -201346538 + MLT1L LTR MaLR 1 302 -313 290 136 236 9 chr3 16690824 16690896 -201346262 + L1ME3A LINE L1 5585 5671 -507 2133 132 7 0 chr3 16690928 16691223 -201345935 - AluJo SINE Alu -15 297 1 1418 243 87 15 chr3 16691223 16691704 -201345454 + L1ME3A LINE L1 5655 6170 0 230 303 0 0 chr3 16691883 16691949 -201345209 - MIR SINE MIR -87 175 110 331 297 35 47 chr3 16692121 16692377 -201344781 + L2 LINE L2 2810 3062 -210 295 311 0 50 chr3 16692448 16692567 -201344591 - MIR SINE MIR -70 192 80 595 242 55 24 chr3 16692634 16692799 -201344359 - MIR SINE MIR 0 262 93 480 301 45 63 chr3 16692874 16693034 -201344124 + L1ME4a LINE L1 5446 5607 -514 2327 92 7 3 chr3 16693034 16693338 -201343820 - AluSx SINE Alu -7 305 1 480 301 45 63 chr3 16693338 16693668 -201343490 + L1ME4a LINE L1 5607 5927 -194 333 281 21 21 chr3 16693738 16693834 -201343324 - MIR SINE MIR -81 181 86 304 233 29 39 chr3 16693876 16693979 -201343179 + L1ME4a LINE L1 6011 6112 -9 925 272 16 12 chr3 16695142 16695385 -201341773 + MIR SINE MIR 19 262 0 720 234 35 53 chr3 16695371 16695598 -201341560 - MIR SINE MIR -34 228 6 * 362 248 97 35 chr3 16695693 16695838 -201341320 + MIR SINE MIR 7 160 -102 425 300 74 97 chr3 16696246 16696913 -201340245 + L2 LINE L2 2637 3272 0 282 217 0 0 chr3 16696933 16697002 -201340156 + (TGGG)n Simple_repeat Simple_repeat 2 70 0 333 201 11 63 chr3 16697049 16697223 -201339935 + (GAATG)n Simple_repeat Simple_repeat 2 166 0 3685 124 50 2 chr3 16697371 16697993 -201339165 + LOR1b-int LTR ERV1 3938 4589 -3531 868 91 0 0 chr3 16697993 16698103 -201339055 - AluY SINE Alu -15 296 187 5678 98 23 49 chr3 16698103 16699078 -201338080 + LOR1b-int LTR ERV1 4576 5524 -2596 1604 56 35 4 chr3 16699068 16699300 -201337858 + LOR1b-int LTR ERV1 5801 6039 -2081 * 495 167 11 0 chr3 16699302 16699392 -201337766 + LOR1b-int LTR ERV1 8030 8120 0 2360 156 66 14 chr3 16699392 16699829 -201337329 + LOR1b LTR ERV1 1 460 -1 181 321 73 42 chr3 16699921 16700086 -201337072 + L2 LINE L2 2481 2650 -664 2604 90 125 188 chr3 16700102 16701053 -201336105 - LTR12 LTR ERV1 0 2427 1 338 274 113 19 chr3 16701126 16701338 -201335820 + L2 LINE L2 2836 3067 -205 411 268 129 16 chr3 16701438 16701632 -201335526 + MER112 DNA MER1_type 39 254 -6 198 203 316 25 chr3 16701653 16701732 -201335426 + L2 LINE L2 3212 3313 0 225 94 0 0 chr3 16701830 16701862 -201335296 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 483 328 11 11 chr3 16701937 16702111 -201335047 + MER5A DNA MER1_type 7 180 -9 375 274 215 0 chr3 16702502 16702637 -201334521 - MIR SINE MIR -79 183 20 218 354 0 0 chr3 16702883 16702979 -201334179 + (CA)n Simple_repeat Simple_repeat 2 97 0 802 279 97 61 chr3 16703034 16703364 -201333794 + MLT1H LTR MaLR 37 392 -157 2546 67 0 3 chr3 16703364 16703661 -201333497 + AluSc SINE Alu 1 296 -13 802 279 97 61 chr3 16703661 16703825 -201333333 + MLT1H LTR MaLR 392 549 0 709 189 223 55 chr3 16703864 16703930 -201333228 + MER69B DNA AcHobo 78 132 -2394 2274 162 37 5 chr3 16703930 16704361 -201332797 - L1MB7 LINE L1 0 6184 5740 709 189 223 55 chr3 16704361 16704532 -201332626 + MER69B DNA AcHobo 132 355 -2171 767 161 0 2 chr3 16704541 16704741 -201332417 + MSTC LTR MaLR 3 249 -179 * 2083 136 71 0 chr3 16704739 16705078 -201332080 + MSTC LTR MaLR 66 428 0 2253 243 70 36 chr3 16705084 16705885 -201331273 + MER69B DNA AcHobo 368 1195 -31 642 220 23 0 chr3 16706530 16706662 -201330496 - MER58B DNA MER1_type -4 337 203 257 242 37 0 chr3 16706999 16707086 -201330072 - MER58 DNA MER1_type -103 238 27 304 153 17 17 chr3 16707096 16707155 -201330003 + L2 LINE L2 3150 3208 -64 267 103 0 0 chr3 16707465 16707504 -201329654 + (A)n Simple_repeat Simple_repeat 1 39 0 1982 196 15 10 chr3 16707528 16707932 -201329226 + MER72 LTR ERV1 317 722 0 224 238 0 0 chr3 16708197 16708239 -201328919 - MIR SINE MIR -3 259 218 435 232 39 15 chr3 16708878 16709007 -201328151 - MIR SINE MIR -62 146 62 2493 74 0 0 chr3 16709032 16709328 -201327830 + AluSc SINE Alu 1 296 -13 621 291 58 5 chr3 16709558 16709747 -201327411 - MIR SINE MIR -56 206 8 363 292 33 0 chr3 16709750 16709870 -201327288 - MIR SINE MIR -36 226 103 450 286 29 47 chr3 16710195 16710366 -201326792 - MIR3 SINE MIR -34 174 7 604 248 15 7 chr3 16710849 16710986 -201326172 - MIR SINE MIR -85 177 40 1414 149 0 14 chr3 16711289 16711511 -201325647 + AluJb SINE Alu 87 305 -7 510 239 89 61 chr3 16711582 16711762 -201325396 + MIR3 SINE MIR 6 190 -18 1324 218 16 76 chr3 16711818 16711968 -201325190 + L1ME3 LINE L1 5746 5903 -259 1907 150 3 20 chr3 16711968 16712262 -201324896 + AluJb SINE Alu 1 289 -23 414 0 0 0 chr3 16712263 16712309 -201324849 + (CATA)n Simple_repeat Simple_repeat 3 48 0 1324 218 16 76 chr3 16712309 16712591 -201324567 + L1ME3 LINE L1 5902 6154 -8 221 300 0 0 chr3 16712604 16712674 -201324484 + (TATATG)n Simple_repeat Simple_repeat 6 75 0 225 245 0 0 chr3 16713351 16713404 -201323754 + MER52A LTR ERV1 1 53 -1702 5610 171 109 90 chr3 16713860 16715250 -201321908 + MER52A LTR ERV1 335 1755 0 5405 118 252 85 chr3 16715520 16716974 -201320184 + pTR5 LTR ERV1 743 2438 0 491 281 31 19 chr3 16716977 16717137 -201320021 - MIR SINE MIR -81 181 20 403 308 113 23 chr3 16717823 16718125 -201319033 + LTR16A1 LTR ERVL 81 409 -48 203 103 0 0 chr3 16718147 16718176 -201318982 - MIR SINE MIR -117 145 117 2668 232 38 17 chr3 16718886 16719231 -201317927 - L1ME2 LINE L1 0 6164 5827 2313 99 3 0 chr3 16719231 16719534 -201317624 - AluSc SINE Alu -5 304 1 2668 232 38 17 chr3 16719534 16720033 -201317125 - L1ME2 LINE L1 -337 5827 5283 682 284 96 30 chr3 16720534 16720939 -201316219 + MLT1L LTR MaLR 165 596 -19 4416 230 47 94 chr3 16720999 16721361 -201315797 - L1MB7 LINE L1 -9 6175 5797 2320 104 0 0 chr3 16721361 16721659 -201315499 - AluSx SINE Alu -14 298 1 4416 230 47 94 chr3 16721659 16722285 -201314873 - L1MB7 LINE L1 -387 5797 5143 2189 87 10 20 chr3 16722285 16722584 -201314574 - AluSc SINE Alu -13 296 1 4416 230 47 94 chr3 16722584 16724230 -201312928 - L1MB7 LINE L1 -1041 5143 3681 * 4489 146 17 37 chr3 16724226 16724306 -201312852 - L1MA8 LINE L1 -260 6031 5951 2172 113 16 19 chr3 16724306 16724617 -201312541 - AluSg SINE Alu 0 310 1 4489 146 17 37 chr3 16724617 16724963 -201312195 - L1MA8 LINE L1 -340 5951 5600 2168 118 0 3 chr3 16724963 16725281 -201311877 - AluY SINE Alu 0 311 1 4489 146 17 37 chr3 16725281 16725570 -201311588 - L1MA8 LINE L1 -691 5600 5332 2390 102 0 13 chr3 16725570 16725885 -201311273 - AluY SINE Alu 0 311 1 4489 146 17 37 chr3 16725885 16726118 -201311040 - L1MA8 LINE L1 -959 5332 5096 626 71 0 0 chr3 16726119 16726203 -201310955 + MLT2A2 LTR ERVL 1 84 -369 * 1002 198 56 34 chr3 16726200 16726518 -201310640 + MLT2B3 LTR ERVL 230 554 0 5211 144 82 17 chr3 16726561 16727043 -201310115 - L1MA8 LINE L1 -1158 4988 4539 1063 171 6 11 chr3 16727043 16727219 -201309939 - FAM SINE Alu 0 175 1 5211 144 82 17 chr3 16727219 16727753 -201309405 - L1MA8 LINE L1 -1607 4539 3906 244 200 0 17 chr3 16727725 16727785 -201309373 - L1MB7 LINE L1 -2446 3700 3642 * 3586 217 44 8 chr3 16727796 16728751 -201308407 - L1MB7 LINE L1 -2812 3334 2346 * 4275 234 49 92 chr3 16728744 16729264 -201307894 - L1MEc LINE L1 -1099 5116 4575 236 185 0 19 chr3 16729264 16729318 -201307840 - HSMAR1 DNA Mariner 0 1287 1235 333 43 22 0 chr3 16729327 16729373 -201307785 + MADE1 DNA Mariner 33 79 -1 4275 234 49 92 chr3 16729373 16729446 -201307712 - L1MEc LINE L1 -1648 4567 4492 1649 176 10 23 chr3 16729446 16729747 -201307411 + AluJo SINE Alu 1 297 -15 4275 234 49 92 chr3 16729747 16731136 -201306022 - L1MEc LINE L1 -1723 4492 3116 3397 212 31 42 chr3 16731167 16731632 -201305526 - L1ME1 LINE L1 -84 6082 5613 2584 17 40 7 chr3 16731632 16731928 -201305230 + AluYa5 SINE Alu 1 306 -5 3397 212 31 42 chr3 16731928 16733061 -201304097 - L1ME1 LINE L1 -553 5613 4501 2126 238 125 37 chr3 16733060 16733701 -201303457 - L1MEc LINE L1 -3085 3130 2546 * 2251 96 0 0 chr3 16733701 16734035 -201303123 - AluSg SINE Alu 0 334 1 2126 238 125 37 chr3 16734035 16734490 -201302668 - L1MEc LINE L1 -3669 2546 1944 228 111 0 0 chr3 16734490 16734526 -201302632 + (TATATG)n Simple_repeat Simple_repeat 2 37 0 2126 238 125 37 chr3 16734526 16734680 -201302478 - L1MEc LINE L1 -4271 1944 1805 7375 43 7 0 chr3 16734766 16735834 -201301324 + L1PA5 LINE L1 5066 6139 -15 468 263 203 5 chr3 16736428 16736808 -201300350 - L2 LINE L2 -341 2973 2519 511 277 81 25 chr3 16737347 16737582 -201299576 + MIR SINE MIR 2 249 -13 234 233 79 45 chr3 16738347 16738468 -201298690 + MIR3 SINE MIR 26 154 -54 412 238 10 0 chr3 16738841 16738942 -201298216 - MIR SINE MIR -107 155 54 283 381 15 31 chr3 16738996 16739256 -201297902 - L2 LINE L2 -193 3079 2824 2077 140 10 3 chr3 16739401 16739708 -201297450 - AluSx SINE Alu -3 309 1 326 222 0 37 chr3 16739772 16739853 -201297305 + MER5A DNA MER1_type 32 109 -80 2442 48 20 3 chr3 16740997 16741289 -201295869 - AluY SINE Alu -14 297 1 471 282 106 22 chr3 16741431 16741658 -201295500 + MIR SINE MIR 15 260 -2 22 0 0 0 chr3 16741658 16741680 -201295478 + AT_rich Low_complexity Low_complexity 1 22 0 1284 62 6 50 chr3 16741687 16741890 -201295268 - AluY SINE Alu 0 307 113 34 0 0 0 chr3 16741896 16741930 -201295228 + AT_rich Low_complexity Low_complexity 1 34 0 352 173 120 0 chr3 16741945 16742020 -201295138 - MER103 DNA DNA -79 87 4 288 243 27 135 chr3 16742314 16742536 -201294622 + L2 LINE L2 2992 3189 -83 532 250 54 30 chr3 16743507 16743675 -201293483 - MIR SINE MIR -89 173 2 1399 240 87 57 chr3 16743725 16744164 -201292994 - MER20B DNA MER1_type -1 782 257 1866 134 19 51 chr3 16744164 16744478 -201292680 + AluJb SINE Alu 1 304 -8 1399 240 87 57 chr3 16744478 16744728 -201292430 - MER20B DNA MER1_type -526 257 16 2123 138 0 3 chr3 16745098 16745396 -201291762 + AluSx SINE Alu 1 297 -15 711 146 0 41 chr3 16745406 16745529 -201291629 + FLAM_C SINE Alu 1 118 -25 347 0 0 23 chr3 16745529 16745573 -201291585 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 469 274 41 118 chr3 16745696 16746036 -201291122 + L2 LINE L2 2959 3272 0 225 315 90 0 chr3 16746902 16747013 -201290145 + LTR16C LTR ERVL 189 309 -182 279 316 35 0 chr3 16747121 16747235 -201289923 + MIR SINE MIR 85 202 -60 2209 104 0 25 chr3 16747288 16747604 -201289554 + AluSx SINE Alu 1 308 -4 2600 62 0 0 chr3 16747626 16747932 -201289226 + AluY SINE Alu 1 306 -5 255 218 218 0 chr3 16747953 16748031 -201289127 + MIR SINE MIR 33 127 -81 1946 147 31 0 chr3 16748057 16748349 -201288809 - AluJo SINE Alu -11 301 1 4068 147 63 92 chr3 16748364 16748545 -201288613 - L1MB7 LINE L1 -10 6174 5989 2214 137 0 20 chr3 16748545 16748889 -201288269 - MER1B DNA MER1_type 0 337 1 4068 147 63 92 chr3 16748889 16749232 -201287926 - L1MB7 LINE L1 -195 5989 5637 492 18 0 0 chr3 16749232 16749289 -201287869 + (CA)n Simple_repeat Simple_repeat 1 57 0 1953 124 14 17 chr3 16749289 16749579 -201287579 + AluJb SINE Alu 1 289 -23 4068 147 63 92 chr3 16749579 16749916 -201287242 - L1MB7 LINE L1 -546 5638 5293 2424 80 3 0 chr3 16749916 16750218 -201286940 - AluY SINE Alu -8 303 1 4068 147 63 92 chr3 16750218 16750269 -201286889 - L1MB7 LINE L1 -891 5293 5281 2197 107 3 3 chr3 16750269 16750568 -201286590 - AluSg SINE Alu -11 299 1 4068 147 63 92 chr3 16750568 16750652 -201286506 - L1MB7 LINE L1 -903 5281 5196 181 244 22 0 chr3 16750800 16750845 -201286313 - MIR SINE MIR -65 143 98 390 287 108 31 chr3 16750987 16751182 -201285976 - MIR SINE MIR -32 230 21 994 219 23 5 chr3 16751617 16751832 -201285326 + MER20 DNA MER1_type 1 219 0 679 48 0 0 chr3 16752000 16752083 -201285075 - AluY SINE Alu -13 298 216 225 0 0 0 chr3 16752137 16752162 -201284996 + (T)n Simple_repeat Simple_repeat 1 25 0 277 286 82 0 chr3 16752273 16752371 -201284787 + L2 LINE L2 3143 3248 -24 1018 176 45 27 chr3 16752488 16752709 -201284449 - MIR SINE MIR -25 237 13 2231 102 3 7 chr3 16752918 16753223 -201283935 + AluSx SINE Alu 1 304 -8 236 306 28 28 chr3 16753393 16753501 -201283657 - MER5B DNA MER1_type -34 144 37 325 282 184 68 chr3 16753586 16753820 -201283338 + L2 LINE L2 3002 3262 -10 246 250 0 0 chr3 16753938 16753998 -201283160 + MIR SINE MIR 112 171 -91 284 224 0 0 chr3 16754725 16754792 -201282366 - MIR SINE MIR -106 156 90 338 342 17 4 chr3 16755087 16755321 -201281837 + L1ME4a LINE L1 4808 5044 -1102 37 23 0 0 chr3 16755691 16755735 -201281423 + AT_rich Low_complexity Low_complexity 1 44 0 1066 288 23 17 chr3 16756486 16756600 -201280558 + L1ME4a LINE L1 5543 5655 -466 1242 185 189 0 chr3 16756600 16756849 -201280309 + AluSx SINE Alu 1 296 -16 1066 288 23 17 chr3 16756849 16757088 -201280070 + L1ME4a LINE L1 5655 5898 -223 238 274 89 40 chr3 16757323 16757447 -201279711 - MIR SINE MIR -48 214 85 516 243 99 0 chr3 16757599 16757751 -201279407 + MIR SINE MIR 96 262 0 1728 148 89 0 chr3 16757930 16758041 -201279117 + AluSx SINE Alu 1 101 -211 206 93 0 23 chr3 16758041 16758084 -201279074 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 1728 148 89 0 chr3 16758084 16758243 -201278915 + AluSx SINE Alu 101 295 -17 1351 137 42 54 chr3 16758512 16758632 -201278526 + AluJb SINE Alu 3 123 -189 240 111 0 0 chr3 16758632 16758677 -201278481 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1998 110 3 38 chr3 16758681 16758973 -201278185 - AluSx SINE Alu -30 282 1 1351 137 42 54 chr3 16758973 16759088 -201278070 + AluJb SINE Alu 126 240 -72 274 226 85 19 chr3 16760097 16760203 -201276955 - MER20B DNA MER1_type -657 126 14 1629 200 164 5 chr3 16760411 16760856 -201276302 - L1ME3A LINE L1 -6 6164 5649 829 112 0 0 chr3 16760898 16761005 -201276153 + FLAM_A SINE Alu 19 125 -17 1381 133 5 0 chr3 16761669 16761864 -201275294 - MLT1A1 LTR MaLR 0 365 170 1477 182 16 11 chr3 16761864 16762163 -201274995 - MLT1A1 LTR MaLR 0 365 4 315 277 117 15 chr3 16762542 16762679 -201274479 + MIR SINE MIR 71 221 -41 1989 117 42 3 chr3 16762826 16763109 -201274049 + AluSg SINE Alu 1 294 -16 183 323 184 14 chr3 16764310 16764592 -201272566 + L2 LINE L2 2648 2977 -337 821 83 19 0 chr3 16764690 16764798 -201272360 - AluSp/q SINE Alu -15 298 189 438 261 91 12 chr3 16765043 16765110 -201272048 + MER5A DNA MER1_type 12 72 -117 2446 54 0 54 chr3 16765110 16765423 -201271735 + AluY SINE Alu 3 298 -13 438 261 91 12 chr3 16765423 16765520 -201271638 + MER5A DNA MER1_type 72 189 0 327 356 23 17 chr3 16765520 16765696 -201271462 + L2 LINE L2 3066 3242 -30 1041 180 0 0 chr3 16766874 16767035 -201270123 + FRAM SINE Alu 2 162 -14 225 0 0 0 chr3 16767186 16767211 -201269947 + (CA)n Simple_repeat Simple_repeat 2 26 0 1531 181 14 18 chr3 16767211 16767488 -201269670 - AluSg SINE Alu -17 293 18 239 385 0 0 chr3 16767490 16767586 -201269572 - MIR SINE MIR -115 147 52 412 277 70 76 chr3 16767654 16767997 -201269161 + L2 LINE L2 2921 3261 -11 1109 247 125 23 chr3 16768120 16768652 -201268506 + MLT1L LTR MaLR 1 612 -3 279 326 174 0 chr3 16768744 16768974 -201268184 + L2 LINE L2 3002 3271 -1 309 250 0 0 chr3 16769063 16769131 -201268027 + MIR3 SINE MIR 93 160 -48 222 356 65 37 chr3 16769553 16769769 -201267389 - L2 LINE L2 -235 3037 2816 2179 107 0 3 chr3 16770400 16770731 -201266427 + AluSx SINE Alu 1 312 0 218 222 37 19 chr3 16770754 16770808 -201266350 + MIR3 SINE MIR 150 204 -4 4352 153 27 10 chr3 16770876 16771643 -201265515 - L1MC1 LINE L1 -9 6324 5545 2573 225 25 0 chr3 16771653 16772258 -201264900 - L1MC1 LINE L1 -1010 5136 4517 828 314 127 12 chr3 16772442 16772892 -201264266 - L2 LINE L2 0 3272 2783 451 323 120 5 chr3 16772915 16773107 -201264051 - MIR SINE MIR -28 234 21 900 230 31 5 chr3 16773658 16773854 -201263304 + MIR SINE MIR 31 231 -31 2277 113 0 7 chr3 16773940 16774242 -201262916 - AluSx SINE Alu -12 300 1 2206 108 0 0 chr3 16774394 16774694 -201262464 - AluSc SINE Alu 0 300 1 334 267 0 0 chr3 16774851 16774926 -201262232 + MIR3 SINE MIR 111 185 -23 576 122 20 20 chr3 16775283 16775381 -201261777 + MER4A LTR ERV1 1 98 -566 1750 131 9 25 chr3 16775382 16775732 -201261426 + MER4A LTR ERV1 262 664 0 602 152 0 0 chr3 16775937 16776036 -201261122 - AluSp/q SINE Alu 0 313 215 1714 179 42 27 chr3 16776036 16776488 -201260670 + LTR10B LTR ERV1 1 547 0 2279 211 63 32 chr3 16776488 16777247 -201259911 + LTR10B-int LTR ERV1 4 846 -6061 2094 249 11 8 chr3 16777282 16777803 -201259355 + LTR10B-int LTR ERV1 1114 1636 -5013 * 4873 113 33 19 chr3 16777797 16778583 -201258575 + LTR10B-int LTR ERV1 1871 2667 -3982 * 4949 276 57 42 chr3 16778568 16780383 -201256775 + LTR10B-int LTR ERV1 3124 4966 -2819 1777 234 31 0 chr3 16780433 16780821 -201256337 + BaEV-int LTR ERV1 4229 4628 -2021 2440 41 3 57 chr3 16780857 16781174 -201255984 + AluY SINE Alu 1 300 -11 1824 158 10 10 chr3 16781175 16781473 -201255685 + AluSx SINE Alu 1 298 -14 956 182 161 108 chr3 16781588 16781874 -201255284 - AluJo SINE Alu -1 301 1 180 0 0 0 chr3 16782140 16782160 -201254998 + (A)n Simple_repeat Simple_repeat 1 20 0 308 337 16 41 chr3 16782291 16782537 -201254621 - MLT1L LTR MaLR -228 387 148 483 264 91 8 chr3 16782620 16782741 -201254417 + L2 LINE L2 3183 3313 0 226 245 19 0 chr3 16782750 16782803 -201254355 - MLT1L LTR MaLR -560 55 2 21 0 0 0 chr3 16784664 16784685 -201252473 + AT_rich Low_complexity Low_complexity 1 21 0 319 315 73 31 chr3 16784872 16785132 -201252026 + MARNA DNA Mariner 61 331 -255 477 287 30 12 chr3 16785232 16785396 -201251762 - MIR SINE MIR -46 216 50 1889 174 0 0 chr3 16785454 16785752 -201251406 + AluSx SINE Alu 1 298 -14 250 295 32 0 chr3 16785880 16785975 -201251183 + MARNA DNA Mariner 478 575 -11 189 338 14 27 chr3 16786708 16786782 -201250376 + L2 LINE L2 3174 3246 -26 447 206 82 106 chr3 16786796 16786966 -201250192 - MIR SINE MIR -10 252 87 1869 169 3 0 chr3 16787304 16787586 -201249572 + AluJb SINE Alu 1 286 -26 216 0 0 0 chr3 16787586 16787610 -201249548 + (AAATG)n Simple_repeat Simple_repeat 2 25 0 1869 169 3 0 chr3 16787610 16787634 -201249524 + AluJb SINE Alu 286 308 -4 1669 191 86 19 chr3 16788190 16788561 -201248597 - MSTD LTR MaLR 0 396 1 680 226 21 56 chr3 16789049 16789060 -201248098 - L1ME2 LINE L1 0 6184 6174 2342 116 0 3 chr3 16789060 16789371 -201247787 + AluSx SINE Alu 1 310 -2 680 226 21 56 chr3 16789371 16789584 -201247574 - L1ME2 LINE L1 -10 6174 5958 2995 146 86 36 chr3 16789586 16789804 -201247354 + MER41B LTR ERV1 1 207 -428 718 122 7 108 chr3 16789804 16789952 -201247206 + FLAM_C SINE Alu 1 133 0 2995 146 86 36 chr3 16789952 16790093 -201247065 + MER41B LTR ERV1 207 340 -295 2310 115 0 3 chr3 16790093 16790397 -201246761 + AluSx SINE Alu 1 303 -9 2995 146 86 36 chr3 16790397 16790462 -201246696 + MER41B LTR ERV1 340 400 -235 2080 151 0 0 chr3 16790462 16790766 -201246392 + AluSx SINE Alu 1 304 -8 2995 146 86 36 chr3 16790766 16790819 -201246339 + MER41B LTR ERV1 400 449 -186 2217 126 3 3 chr3 16790819 16791129 -201246029 - AluSx SINE Alu -2 310 1 2995 146 86 36 chr3 16791129 16791253 -201245905 + MER41B LTR ERV1 449 635 0 271 218 140 2 chr3 16791253 16791353 -201245805 - L1ME2 LINE L1 -205 5959 5848 250 240 0 0 chr3 16791531 16791581 -201245577 + MER92B LTR ERV1 1 50 -586 2199 117 27 0 chr3 16791599 16791872 -201245286 + AluSx SINE Alu 1 265 -47 282 29 0 0 chr3 16791872 16791907 -201245251 + (TC)n Simple_repeat Simple_repeat 1 35 0 * 306 0 0 0 chr3 16791906 16791940 -201245218 + (CA)n Simple_repeat Simple_repeat 1 34 0 2199 117 27 0 chr3 16791907 16791964 -201245194 + AluSx SINE Alu 265 306 -6 578 144 48 0 chr3 16791964 16792068 -201245090 - MER41A LTR ERV1 -12 542 434 2210 114 7 3 chr3 16792068 16792375 -201244783 + AluSx SINE Alu 1 308 -4 586 143 0 51 chr3 16792375 16792473 -201244685 + AluSg/x SINE Alu 106 198 -112 988 101 7 0 chr3 16792482 16792621 -201244537 + AluSg/x SINE Alu 173 312 0 3055 159 8 6 chr3 16792622 16793138 -201244020 - MER41B LTR ERV1 -118 517 1 2365 110 0 3 chr3 16793161 16793471 -201243687 + AluSq SINE Alu 1 309 -4 2566 81 0 0 chr3 16793471 16793780 -201243378 + AluY SINE Alu 1 309 -2 1927 159 0 0 chr3 16793785 16794075 -201243083 + AluJo SINE Alu 2 291 -21 282 329 0 5 chr3 16794344 16794554 -201242604 - AluSp SINE Alu -94 209 1 2113 207 34 71 chr3 16794788 16795176 -201241982 - L1MC5 LINE L1 -140 7821 7420 1695 175 46 0 chr3 16795176 16795461 -201241697 + AluJo SINE Alu 1 298 -14 2113 207 34 71 chr3 16795461 16795583 -201241575 - L1MC5 LINE L1 -541 7420 7295 1348 211 6 30 chr3 16795583 16795915 -201241243 + MER33 DNA MER1_type 1 324 0 2113 207 34 71 chr3 16795915 16796147 -201241011 - L1MC5 LINE L1 -666 7295 7106 362 282 102 53 chr3 16796168 16796374 -201240784 + L2 LINE L2 3027 3242 -71 367 281 47 31 chr3 16796424 16796552 -201240606 + MIR3 SINE MIR 3 132 -76 331 259 12 0 chr3 16797169 16797254 -201239904 - MIR SINE MIR -114 148 63 353 273 13 0 chr3 16797270 16797347 -201239811 - L2 LINE L2 0 3272 3195 2586 86 28 25 chr3 16797464 16797826 -201239332 - THE1B LTR MaLR 0 364 2 341 241 125 0 chr3 16798030 16798142 -201239016 - L2 LINE L2 -3 3310 3185 352 274 28 57 chr3 16798157 16798263 -201238895 + MER91C DNA MER1_type 36 138 -2 462 210 68 56 chr3 16798267 16798429 -201238729 - L2 LINE L2 -123 3190 3027 234 222 42 0 chr3 16798465 16798537 -201238621 - LTR33 LTR ERVL -54 467 393 428 256 61 22 chr3 16798625 16798805 -201238353 - LTR33 LTR ERVL -308 213 27 842 260 131 26 chr3 16799017 16799479 -201237679 - L2 LINE L2 -316 2997 2479 3059 112 0 18 chr3 16799479 16799915 -201237243 + MSTC LTR MaLR 1 428 0 842 260 131 26 chr3 16799915 16799944 -201237214 - L2 LINE L2 -834 2479 2454 555 198 55 93 chr3 16800099 16800356 -201236802 + L1MC5 LINE L1 7670 7916 -45 2203 103 0 3 chr3 16800384 16800727 -201236431 + AluSx SINE Alu 1 312 0 218 222 37 19 chr3 16800750 16800804 -201236354 + MIR3 SINE MIR 150 204 -4 4352 153 27 10 chr3 16800872 16801639 -201235519 - L1MC1 LINE L1 -9 6324 5545 2573 225 25 0 chr3 16801649 16802254 -201234904 - L1MC1 LINE L1 -1010 5136 4517 828 314 127 12 chr3 16802438 16802888 -201234270 - L2 LINE L2 0 3272 2783 451 323 120 5 chr3 16802911 16803103 -201234055 - MIR SINE MIR -28 234 21 900 230 31 5 chr3 16803654 16803850 -201233308 + MIR SINE MIR 31 231 -31 2368 90 7 3 chr3 16803936 16804235 -201232923 - AluSg SINE Alu -10 300 1 2237 108 0 10 chr3 16804391 16804687 -201232471 - AluSx SINE Alu -14 298 6 397 274 222 19 chr3 16804827 16805045 -201232113 - MIR SINE MIR -1 261 5 272 291 68 86 chr3 16805027 16805481 -201231677 - L2 LINE L2 -20 3252 2807 * 360 310 16 82 chr3 16805516 16805557 -201231601 + MIR SINE MIR 12 54 -208 2416 63 3 20 chr3 16805557 16805859 -201231299 + AluY SINE Alu 1 297 -14 360 310 16 82 chr3 16805859 16806001 -201231157 + MIR SINE MIR 54 183 -79 2062 148 7 3 chr3 16806417 16806722 -201230436 - AluSx SINE Alu -6 306 1 441 324 97 15 chr3 16806798 16807128 -201230030 - L1ME4a LINE L1 -78 6043 5687 337 273 86 0 chr3 16807138 16807277 -201229881 - L1ME4a LINE L1 -471 5650 5500 1664 173 14 51 chr3 16807377 16807672 -201229486 - AluJo SINE Alu -23 289 6 735 216 37 32 chr3 16807830 16808020 -201229138 - MLT1A2 LTR MaLR 0 374 184 208 175 25 0 chr3 16808052 16808092 -201229066 - MIR SINE MIR -109 153 113 368 293 186 30 chr3 16808266 16808380 -201228778 + MIR SINE MIR 14 109 -153 1939 145 7 13 chr3 16808380 16808683 -201228475 + AluJb SINE Alu 1 301 -11 368 293 186 30 chr3 16808683 16808771 -201228387 + MIR SINE MIR 109 248 -14 1978 165 0 3 chr3 16808780 16809083 -201228075 + AluJb SINE Alu 1 302 -10 690 287 120 57 chr3 16809213 16809579 -201227579 - L2 LINE L2 0 3313 2925 326 241 131 44 chr3 16810125 16810262 -201226896 + MER5A DNA MER1_type 3 151 -38 193 235 0 0 chr3 16810995 16811029 -201226129 + MIR SINE MIR 3 36 -226 1355 252 95 32 chr3 16811036 16811565 -201225593 + L2 LINE L2 2741 3313 0 315 167 61 15 chr3 16811585 16811651 -201225507 + MIR SINE MIR 56 124 -138 1032 169 144 121 chr3 16811698 16812046 -201225112 - MLT1A1 LTR MaLR -6 359 4 190 281 18 0 chr3 16812050 16812107 -201225051 + MIR SINE MIR 199 256 -6 243 0 0 0 chr3 16812869 16812896 -201224262 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 345 289 89 39 chr3 16813031 16813211 -201223947 + MER117 DNA MER1_type 3 191 -6 2297 123 3 0 chr3 16813700 16814010 -201223148 - AluSx SINE Alu -1 311 1 369 223 190 58 chr3 16814074 16814195 -201222963 + MER5A DNA MER1_type 32 168 -21 253 360 117 14 chr3 16814705 16814919 -201222239 - L2 LINE L2 -508 2806 2571 312 306 48 68 chr3 16815603 16815897 -201221261 - L1M2a LINE L1 -5792 1376 1089 435 263 25 17 chr3 16816501 16816619 -201220539 + L2 LINE L2 3192 3310 -3 308 355 0 0 chr3 16816968 16817078 -201220080 + MIR SINE MIR 137 246 -16 294 300 78 0 chr3 16817798 16817888 -201219270 + MIR SINE MIR 25 121 -87 279 0 0 0 chr3 16818452 16818483 -201218675 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 258 32 0 0 chr3 16818908 16818939 -201218219 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 470 279 78 70 chr3 16818939 16819197 -201217961 - L2 LINE L2 -13 3259 3000 884 225 57 33 chr3 16819303 16819547 -201217611 - MIR SINE MIR -2 260 11 184 209 90 45 chr3 16819664 16819731 -201217427 - L2 LINE L2 -559 2755 2686 189 162 68 122 chr3 16820007 16820081 -201217077 - L2 LINE L2 -1823 1491 1422 225 0 0 0 chr3 16820122 16820147 -201217011 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 337 283 75 0 chr3 16820268 16820374 -201216784 + L2 LINE L2 2543 2656 -658 385 257 55 0 chr3 16820376 16820485 -201216673 + MIR SINE MIR 97 211 -51 225 170 234 43 chr3 16821798 16821892 -201215266 + LTR33 LTR ERVL 47 158 -363 376 208 115 0 chr3 16822567 16822663 -201214495 + MIR SINE MIR 123 229 -33 1894 272 71 31 chr3 16823185 16823731 -201213427 + L1M4 LINE L1 3532 4136 -2010 2327 117 0 0 chr3 16823731 16824031 -201213127 - AluSx SINE Alu -12 300 1 1894 272 71 31 chr3 16824031 16824459 -201212699 + L1M4 LINE L1 4136 4545 -1601 259 317 165 18 chr3 16824514 16824678 -201212480 + MIR SINE MIR 35 222 -40 451 198 77 0 chr3 16824840 16824931 -201212227 - MIR SINE MIR -71 191 94 341 336 107 0 chr3 16824939 16825061 -201212097 - L2 LINE L2 0 3272 3138 256 303 0 56 chr3 16825060 16825149 -201212009 - MIR SINE MIR -166 96 13 * 216 243 162 88 chr3 16825715 16825863 -201211295 - MIR SINE MIR -72 190 32 277 277 59 30 chr3 16826099 16826200 -201210958 - MIR3 SINE MIR -47 161 58 705 315 42 4 chr3 16826236 16826474 -201210684 - MIR SINE MIR -10 252 6 529 243 81 27 chr3 16826987 16827135 -201210023 + MIR SINE MIR 35 190 -72 332 208 42 21 chr3 16827908 16828004 -201209154 + MIR SINE MIR 57 154 -108 615 159 188 7 chr3 16828243 16828381 -201208777 + L1M4 LINE L1 5493 5655 -529 1422 164 13 51 chr3 16828406 16828717 -201208441 - AluJb SINE Alu -9 303 5 935 199 52 47 chr3 16829441 16829652 -201207506 - MIR SINE MIR -32 230 19 218 204 74 0 chr3 16830098 16830152 -201207006 + G-rich Low_complexity Low_complexity 2 59 0 657 244 37 83 chr3 16830506 16830748 -201206410 - MIR SINE MIR -24 238 8 422 176 133 46 chr3 16830780 16830931 -201206227 + MIR SINE MIR 8 168 -63 1635 158 7 28 chr3 16830949 16831234 -201205924 + AluJo SINE Alu 1 279 -33 1096 300 101 17 chr3 16831278 16831804 -201205354 - MLT1K LTR MaLR -15 573 4 390 261 11 0 chr3 16831805 16831893 -201205265 + MIR SINE MIR 159 247 -15 248 237 99 153 chr3 16831947 16832078 -201205080 - MIR3 SINE MIR -48 160 37 315 247 13 13 chr3 16832538 16832615 -201204543 + L1ME4a LINE L1 6043 6119 -2 187 340 160 0 chr3 16832835 16832929 -201204229 + MIR3 SINE MIR 73 181 -27 336 305 42 75 chr3 16833151 16833364 -201203794 - L1ME LINE L1 -5863 207 2 355 252 148 22 chr3 16833374 16833509 -201203649 + L1ME4a LINE L1 5870 6021 -100 186 292 0 0 chr3 16833592 16833640 -201203518 - MIR SINE MIR -113 149 102 208 322 138 0 chr3 16833755 16833842 -201203316 - L2 LINE L2 -50 3222 3124 225 0 0 0 chr3 16833918 16833943 -201203215 + (A)n Simple_repeat Simple_repeat 1 25 0 1311 256 44 46 chr3 16833988 16834399 -201202759 + MLT1J LTR MaLR 100 509 -2 2275 118 10 0 chr3 16834547 16834853 -201202305 - AluSc SINE Alu 0 309 1 699 257 60 49 chr3 16834869 16835093 -201202065 + MIR SINE MIR 5 221 -41 195 250 33 17 chr3 16835325 16835385 -201201773 + MIR SINE MIR 128 188 -74 308 289 128 7 chr3 16835464 16835613 -201201545 - L2 LINE L2 -8 3305 3139 1765 232 107 42 chr3 16836451 16837162 -201199996 + L1ME3 LINE L1 5406 6162 0 307 246 105 35 chr3 16837317 16837431 -201199727 - L2 LINE L2 -219 3053 2932 255 323 122 39 chr3 16837569 16837848 -201199310 - L2 LINE L2 -631 2683 2382 846 118 0 0 chr3 16837852 16837971 -201199187 - AluSg/x SINE Alu -1 308 190 529 163 0 20 chr3 16838147 16838245 -201198913 - L1PB4 LINE L1 -279 5877 5782 336 275 0 44 chr3 16838271 16838362 -201198796 - L1MC4 LINE L1 -1339 6703 6617 307 247 12 0 chr3 16838418 16838503 -201198655 - AluY SINE Alu -135 166 81 517 247 48 12 chr3 16838973 16839139 -201198019 + MER20 DNA MER1_type 8 179 -40 2804 124 13 0 chr3 16839177 16839627 -201197531 - L1P5 LINE L1 -367 5789 5334 196 140 35 53 chr3 16839683 16839740 -201197418 - L2 LINE L2 -337 2976 2921 1003 242 92 84 chr3 16840211 16840595 -201196563 + L2 LINE L2 2649 3044 -269 2138 132 0 3 chr3 16840595 16840890 -201196268 - AluSg SINE Alu -16 294 1 1003 242 92 84 chr3 16840890 16841158 -201196000 + L2 LINE L2 3044 3308 -5 400 274 32 24 chr3 16841186 16841310 -201195848 - MIR SINE MIR -66 142 18 263 295 13 26 chr3 16841382 16841460 -201195698 + MIR3 SINE MIR 15 91 -117 257 284 25 12 chr3 16841566 16841647 -201195511 + MIR SINE MIR 2 83 -179 2311 208 79 12 chr3 16841692 16842197 -201194961 + MLT1F LTR MaLR 4 542 0 460 231 0 28 chr3 16842248 16842356 -201194802 - MIR SINE MIR -71 191 87 180 379 74 0 chr3 16842349 16842444 -201194714 - L2 LINE L2 -89 3183 3082 * 302 247 43 21 chr3 16842746 16842839 -201194319 - MIR SINE MIR -120 142 48 500 308 91 0 chr3 16843359 16843502 -201193656 + MER91A DNA MER1_type 1 156 -40 3121 164 109 71 chr3 16843504 16843943 -201193215 - L1MB7 LINE L1 0 6184 5763 2330 104 0 0 chr3 16843943 16844242 -201192916 + AluSx SINE Alu 1 299 -13 2213 118 7 0 chr3 16844242 16844539 -201192619 + AluSq SINE Alu 6 304 -9 1741 159 0 0 chr3 16844548 16844799 -201192359 + AluJb SINE Alu 1 251 -61 3121 164 109 71 chr3 16844799 16845201 -201191957 - L1MB7 LINE L1 -428 5756 5283 2324 67 3 27 chr3 16845201 16845499 -201191659 + AluY SINE Alu 1 291 -20 3121 164 109 71 chr3 16845499 16845590 -201191568 - L1MB7 LINE L1 -901 5283 5197 187 129 0 0 chr3 16845724 16845755 -201191403 - L2 LINE L2 -17 3255 3225 230 284 65 111 chr3 16845970 16846231 -201190927 + L2 LINE L2 2465 2713 -601 209 172 62 109 chr3 16846859 16846923 -201190235 - MIR3 SINE MIR -43 165 105 310 280 152 15 chr3 16846924 16847056 -201190102 - MER5B DNA MER1_type 0 178 29 2420 87 7 3 chr3 16847423 16847732 -201189426 + AluSx SINE Alu 3 312 0 1910 99 32 35 chr3 16847896 16848180 -201188978 + AluSq SINE Alu 1 283 -30 216 0 0 0 chr3 16848191 16848215 -201188943 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3993 234 95 96 chr3 16848235 16848982 -201188176 + L2 LINE L2 953 1699 -1614 496 212 24 3 chr3 16848982 16849125 -201188033 - MLT1H LTR MaLR -346 203 20 3993 234 95 96 chr3 16849125 16849620 -201187538 + L2 LINE L2 1699 2193 -1120 1978 120 85 0 chr3 16849620 16849903 -201187255 - AluSx SINE Alu -5 307 1 3993 234 95 96 chr3 16849903 16850874 -201186284 + L2 LINE L2 2193 3305 -8 246 265 31 31 chr3 16850925 16851023 -201186135 + (TCCA)n Simple_repeat Simple_repeat 4 101 0 244 322 22 11 chr3 16851087 16851177 -201185981 - L2 LINE L2 -9 3263 3173 4181 33 19 0 chr3 16851224 16851705 -201185453 - LTR2B LTR ERV1 0 490 1 601 250 79 7 chr3 16852044 16852196 -201184962 + MER5B DNA MER1_type 15 177 -1 303 28 0 0 chr3 16852505 16852541 -201184617 + (GA)n Simple_repeat Simple_repeat 1 36 0 302 257 43 0 chr3 16852774 16852844 -201184314 - LTR16B LTR ERVL -6 458 386 325 258 140 0 chr3 16852862 16852955 -201184203 - L2 LINE L2 -33 3239 3134 488 254 23 0 chr3 16853006 16853136 -201184022 + MER94 DNA DNA 1 133 -1 201 375 45 0 chr3 16853147 16853235 -201183923 - L2 LINE L2 -199 3073 2982 3974 142 27 24 chr3 16853559 16853606 -201183552 - L1MB3 LINE L1 -1 6182 6137 2196 116 0 10 chr3 16853606 16853907 -201183251 - AluSx SINE Alu -14 298 1 3974 142 27 24 chr3 16853907 16854570 -201182588 - L1MB3 LINE L1 -46 6137 5470 1431 164 30 43 chr3 16854570 16854874 -201182284 - L1MD2 LINE L1 -2 6357 6057 2462 93 0 0 chr3 16854906 16855207 -201181951 - AluSx SINE Alu -11 301 1 658 176 59 94 chr3 16855235 16855491 -201181667 - L1MC5 LINE L1 -45 7916 7670 856 256 131 26 chr3 16855646 16855675 -201181483 + L2 LINE L2 2454 2479 -834 3056 112 0 18 chr3 16855675 16856111 -201181047 - MSTC LTR MaLR 0 428 1 856 256 131 26 chr3 16856111 16856573 -201180585 + L2 LINE L2 2479 2997 -316 445 250 61 22 chr3 16856786 16856966 -201180192 + LTR33 LTR ERVL 27 213 -308 234 222 42 0 chr3 16857054 16857126 -201180032 + LTR33 LTR ERVL 393 467 -54 462 210 68 56 chr3 16857162 16857324 -201179834 + L2 LINE L2 3027 3190 -123 352 274 28 57 chr3 16857328 16857434 -201179724 + MER91C DNA MER1_type 3 105 -35 341 241 125 0 chr3 16857449 16857561 -201179597 + L2 LINE L2 3185 3310 -3 2573 88 28 25 chr3 16857765 16858127 -201179031 + THE1B LTR MaLR 2 364 0 353 273 13 0 chr3 16858244 16858321 -201178837 + L2 LINE L2 3195 3272 0 331 259 12 0 chr3 16858337 16858422 -201178736 + MIR SINE MIR 63 148 -114 367 281 47 31 chr3 16859039 16859167 -201177991 - MIR3 SINE MIR -76 132 3 344 286 102 53 chr3 16859217 16859423 -201177735 - L2 LINE L2 -71 3242 3027 2336 210 46 70 chr3 16859444 16859676 -201177482 + L1MC5 LINE L1 7106 7342 -619 1348 211 6 30 chr3 16859676 16860008 -201177150 - MER33 DNA MER1_type 0 324 1 2336 210 46 70 chr3 16860008 16860130 -201177028 + L1MC5 LINE L1 7342 7465 -496 1725 171 45 0 chr3 16860130 16860416 -201176742 - AluJo SINE Alu -13 299 1 2336 210 46 70 chr3 16860416 16860892 -201176266 + L1MC5 LINE L1 7465 7917 -44 241 254 51 65 chr3 16861412 16861550 -201175608 + LTR67 LTR ERVL 418 553 -4 181 313 188 0 chr3 16861774 16861886 -201175272 + L2 LINE L2 2178 2310 -1004 298 284 21 106 chr3 16862086 16862322 -201174836 - Charlie8 DNA MER1_type -2192 225 10 406 386 7 0 chr3 16862359 16862504 -201174654 + L2 LINE L2 3109 3254 -18 435 202 0 0 chr3 16862521 16862640 -201174518 + (TGGA)n Simple_repeat Simple_repeat 4 122 0 429 248 66 25 chr3 16863421 16863542 -201173616 - MIR SINE MIR -13 249 124 706 197 45 0 chr3 16863560 16863692 -201173466 + MIR SINE MIR 18 155 -107 688 283 104 10 chr3 16863727 16864142 -201173016 - LTR16C LTR ERVL -7 484 1 2550 68 3 0 chr3 16864180 16864543 -201172615 + AluY SINE Alu 1 311 0 1325 230 71 37 chr3 16864548 16865038 -201172120 + MLT1E2 LTR MaLR 1 505 0 293 274 12 0 chr3 16865038 16865122 -201172036 - MIR SINE MIR -135 127 43 474 264 76 100 chr3 16865224 16865474 -201171684 + MIR SINE MIR 2 245 -17 295 235 183 11 chr3 16865544 16865697 -201171461 - MIR SINE MIR -63 145 4 192 313 122 14 chr3 16865881 16866028 -201171130 - L2 LINE L2 -5 3267 3105 890 244 181 25 chr3 16866161 16866735 -201170423 - L2 LINE L2 -166 3147 2481 854 276 77 13 chr3 16866788 16867099 -201170059 - LTR16C LTR ERVL -14 477 147 991 264 44 34 chr3 16867974 16868447 -201168711 + L1MC/D LINE L1 660 1057 -5148 655 139 0 0 chr3 16868447 16868555 -201168603 + L1MA7 LINE L1 6182 6289 -2 991 264 44 34 chr3 16868555 16868659 -201168499 + L1MC/D LINE L1 1057 1158 -5047 1559 156 4 4 chr3 16868675 16868912 -201168246 + AluSx SINE Alu 3 239 -73 375 265 75 55 chr3 16868961 16869161 -201167997 - Charlie8 DNA MER1_type -2212 205 2 252 204 19 37 chr3 16869173 16869227 -201167931 - L3 LINE CR1 -473 1104 1052 7442 41 15 0 chr3 16869341 16870426 -201166732 - L1PA5 LINE L1 -1 6153 5066 1926 252 115 39 chr3 16870512 16870666 -201166492 + L1MC/D LINE L1 1805 1946 -4269 228 111 0 0 chr3 16870666 16870702 -201166456 + (CATATA)n Simple_repeat Simple_repeat 2 37 0 1926 252 115 39 chr3 16870702 16871157 -201166001 + L1MC/D LINE L1 1946 2365 -3850 2264 96 0 0 chr3 16871157 16871491 -201165667 + AluSg SINE Alu 1 334 0 1926 252 115 39 chr3 16871491 16872132 -201165026 + L1MC/D LINE L1 2365 3130 -3085 * 3068 205 23 39 chr3 16872131 16873264 -201163894 + L1MC/D LINE L1 4570 5678 -743 2524 37 3 56 chr3 16873265 16873588 -201163570 - AluY SINE Alu -5 306 1 1815 234 28 0 chr3 16873624 16874013 -201163145 - LTR10B-int LTR ERV1 -2021 4628 4229 4992 275 57 40 chr3 16874063 16875875 -201161283 - LTR10B-int LTR ERV1 -2819 4966 3124 4873 113 33 19 chr3 16875860 16876646 -201160512 - LTR10B-int LTR ERV1 -3982 2667 1871 * 2094 249 11 8 chr3 16876640 16877161 -201159997 - LTR10B-int LTR ERV1 -5013 1636 1114 * 2279 211 63 32 chr3 16877196 16877955 -201159203 - LTR10B-int LTR ERV1 -6061 588 4 1714 179 42 27 chr3 16877955 16878407 -201158751 - LTR10B LTR ERV1 0 547 1 602 152 0 0 chr3 16878407 16878506 -201158652 + AluSp/q SINE Alu 215 313 0 1750 131 9 25 chr3 16878711 16879061 -201158097 - MER4A LTR ERV1 0 664 262 576 122 20 20 chr3 16879062 16879160 -201157998 - MER4A LTR ERV1 -566 98 1 334 267 0 0 chr3 16879517 16879592 -201157566 - MIR3 SINE MIR -23 185 111 23 33 0 0 chr3 16879709 16879739 -201157419 + AT_rich Low_complexity Low_complexity 1 30 0 2207 108 0 0 chr3 16879749 16880049 -201157109 + AluSc SINE Alu 1 300 0 2478 85 0 19 chr3 16880201 16880518 -201156640 + AluSx SINE Alu 1 311 -1 211 250 27 89 chr3 16880523 16880635 -201156523 - MIR SINE MIR -157 105 1 802 262 113 0 chr3 16881129 16881350 -201155808 - MIR SINE MIR -15 247 2 2212 114 10 0 chr3 16881779 16882076 -201155082 + AluSp SINE Alu 1 300 -13 1397 183 0 20 chr3 16882902 16883148 -201154010 + AluJb SINE Alu 1 241 -71 289 287 119 0 chr3 16884321 16884422 -201152736 + L2 LINE L2 3155 3267 -5 326 344 84 15 chr3 16884445 16884576 -201152582 + L3 LINE CR1 1323 1462 -115 288 314 132 0 chr3 16885515 16885636 -201151522 - MIR SINE MIR -3 259 123 543 236 0 0 chr3 16885682 16885788 -201151370 + MER5A DNA MER1_type 4 109 -80 426 277 142 0 chr3 16885886 16886034 -201151124 + MIR SINE MIR 81 249 -13 193 129 0 0 chr3 16886212 16886243 -201150915 - L2 LINE L2 -214 3058 3028 329 254 116 43 chr3 16886484 16886622 -201150536 - MIR3 SINE MIR -47 161 14 2539 51 0 3 chr3 16886801 16887095 -201150063 + AluY SINE Alu 1 293 -18 404 233 207 33 chr3 16887192 16887342 -201149816 - MIR3 SINE MIR -23 185 10 614 243 7 7 chr3 16887878 16888018 -201149140 - MIR SINE MIR -117 145 6 386 295 34 13 chr3 16888443 16888592 -201148566 + MIR3 SINE MIR 36 187 -21 650 235 173 0 chr3 16889853 16890032 -201147126 + MER63A DNA MER1_type 1 210 0 249 289 23 16 chr3 16890295 16890513 -201146645 + GA-rich Low_complexity Low_complexity 2 312 0 195 261 116 0 chr3 16891370 16891439 -201145719 - MIR3 SINE MIR -49 159 83 233 280 2 0 chr3 16891617 16891690 -201145468 + Charlie8 DNA MER1_type 1357 1417 -1000 1064 182 0 0 chr3 16892178 16892343 -201144815 - AluJb SINE Alu -14 298 134 508 303 164 0 chr3 16892528 16892723 -201144435 + MIR SINE MIR 35 261 -1 2437 85 0 3 chr3 16892803 16893109 -201144049 - AluY SINE Alu -6 305 1 750 235 71 6 chr3 16894176 16894346 -201142812 - MIR SINE MIR -81 181 1 305 294 56 40 chr3 16894508 16894634 -201142524 + MIR SINE MIR 57 184 -78 327 315 174 13 chr3 16894896 16895045 -201142113 + MIR3 SINE MIR 10 182 -26 356 285 41 16 chr3 16895313 16895436 -201141722 - MIR SINE MIR -110 152 27 193 256 151 58 chr3 16895674 16895760 -201141398 + L2 LINE L2 3195 3288 -25 383 291 9 9 chr3 16896414 16896524 -201140634 + MIR SINE MIR 23 132 -130 22 0 0 0 chr3 16896736 16896758 -201140400 + AT_rich Low_complexity Low_complexity 1 22 0 233 230 17 35 chr3 16897060 16897147 -201140011 + MIR SINE MIR 76 163 -58 239 167 62 0 chr3 16897924 16897972 -201139186 + MIR SINE MIR 109 159 -103 342 366 16 21 chr3 16899038 16899224 -201137934 + MIR SINE MIR 38 222 -40 622 264 108 35 chr3 16899301 16899529 -201137629 + MIR SINE MIR 17 262 0 238 209 0 0 chr3 16900628 16900671 -201136487 - MIR SINE MIR -55 153 111 541 264 17 0 chr3 16900681 16900847 -201136311 + MIR SINE MIR 20 187 -50 2253 102 3 0 chr3 16903098 16903439 -201133719 + AluSq SINE Alu 2 313 0 3102 116 53 2 chr3 16903606 16904096 -201133062 + L1PB4 LINE L1 5536 6050 -106 2346 86 3 3 chr3 16904097 16904389 -201132769 + AluSg SINE Alu 2 293 -17 505 305 102 5 chr3 16906055 16906242 -201130916 - MIR SINE MIR -21 241 37 2032 132 51 25 chr3 16906583 16906938 -201130220 - THE1B LTR MaLR 0 364 1 343 188 75 25 chr3 16907770 16907850 -201129308 + MER117 DNA MER1_type 112 195 -2 241 286 36 57 chr3 16907865 16908005 -201129153 - MIR3 SINE MIR -61 147 11 510 238 69 31 chr3 16908076 16908236 -201128922 - L2 LINE L2 -7 3306 3141 394 266 58 40 chr3 16908627 16908800 -201128358 + MER20B DNA MER1_type 1 176 -607 330 80 0 0 chr3 16909805 16909855 -201127303 + (TG)n Simple_repeat Simple_repeat 1 50 0 492 319 14 7 chr3 16910308 16910446 -201126712 - MIR3 SINE MIR -62 146 8 457 269 81 50 chr3 16910627 16910787 -201126371 + MIR SINE MIR 92 256 -6 434 313 0 21 chr3 16911217 16911361 -201125797 + L2 LINE L2 3160 3300 -13 288 231 209 22 chr3 16912544 16912678 -201124480 + MIR SINE MIR 34 192 -70 196 278 0 19 chr3 16912906 16912960 -201124198 - MIR SINE MIR -66 142 90 365 242 131 0 chr3 16913463 16913562 -201123596 - MIR SINE MIR -117 145 34 488 269 0 22 chr3 16913680 16913814 -201123344 - MIR SINE MIR -109 153 23 207 302 94 19 chr3 16914132 16914291 -201122867 - L2 LINE L2 -663 2651 2481 1168 257 158 11 chr3 16914314 16914989 -201122169 + L2 LINE L2 2441 3218 -95 318 329 41 24 chr3 16915024 16915194 -201121964 - L2 LINE L2 -876 2438 2266 * 321 219 106 57 chr3 16915186 16915309 -201121849 + MIR SINE MIR 116 244 -18 538 243 11 37 chr3 16915665 16915854 -201121304 - L1ME4a LINE L1 -4 6117 5934 396 285 91 0 chr3 16916134 16916280 -201120878 - MIR SINE MIR -65 143 36 467 284 58 26 chr3 16916345 16916500 -201120658 - MIR SINE MIR -44 218 59 467 265 163 33 chr3 16916899 16917114 -201120044 + MIR SINE MIR 7 249 -13 2169 178 137 9 chr3 16918185 16918646 -201118512 + MLT2B1 LTR ERVL 1 520 0 591 281 65 23 chr3 16918659 16918876 -201118282 + MIR SINE MIR 20 245 -17 771 167 16 0 chr3 16919060 16919186 -201117972 + AluJb SINE Alu 101 228 -84 538 288 86 58 chr3 16919320 16919563 -201117595 + MIR SINE MIR 13 262 0 219 171 24 0 chr3 16919864 16919905 -201117253 + MIR SINE MIR 89 130 -78 263 86 0 0 chr3 16921062 16921097 -201116061 - MIR SINE MIR -111 151 117 505 271 7 21 chr3 16921282 16921422 -201115736 + MIR SINE MIR 1 138 -124 466 285 23 41 chr3 16921918 16922090 -201115068 - MIR3 SINE MIR -31 177 9 322 312 75 27 chr3 16922842 16923028 -201114130 + MIR SINE MIR 33 227 -35 221 204 0 0 chr3 16923622 16923666 -201113492 - L2 LINE L2 -21 3251 3208 687 236 93 0 chr3 16923681 16923842 -201113316 + MIR SINE MIR 21 196 -66 211 315 0 0 chr3 16924856 16924929 -201112229 + CT-rich Low_complexity Low_complexity 4 76 0 837 275 26 70 chr3 16925867 16926180 -201110978 - L2 LINE L2 -12 3260 2962 941 248 173 15 chr3 16926306 16926717 -201110441 + MLT1K LTR MaLR 1 476 0 1261 201 93 18 chr3 16927372 16927760 -201109398 - MER113 DNA MER1_type? -96 425 9 297 152 0 0 chr3 16927793 16927839 -201109319 - L2 LINE L2 -1 3312 3267 270 314 91 45 chr3 16927874 16928116 -201109042 - L2 LINE L2 -477 2837 2585 212 261 29 72 chr3 16928111 16928180 -201108978 + L2 LINE L2 3207 3272 0 * 473 285 89 6 chr3 16928226 16928384 -201108774 - MIR3 SINE MIR 0 208 38 314 259 33 50 chr3 16928415 16928563 -201108595 - MIR SINE MIR -68 140 1 487 259 177 0 chr3 16929263 16929410 -201107748 + MIR SINE MIR 87 259 -3 216 365 21 10 chr3 16929426 16929522 -201107636 + L2 LINE L2 2960 3056 -216 484 259 98 52 chr3 16929720 16929913 -201107245 + L2 LINE L2 2853 3054 -218 2248 119 0 0 chr3 16929930 16930224 -201106934 - AluSx SINE Alu -18 294 1 362 261 118 25 chr3 16930775 16930854 -201106304 - MIR SINE MIR -61 147 98 724 113 0 0 chr3 16930854 16930960 -201106198 + L1PA5 LINE L1 6046 6151 -3 362 261 118 25 chr3 16930960 16931055 -201106103 - MIR SINE MIR -110 98 13 202 308 42 50 chr3 16930994 16931114 -201106044 + MIR SINE MIR 37 155 -107 * 827 216 145 4 chr3 16931205 16931432 -201105726 - MIR SINE MIR -3 259 1 756 193 0 15 chr3 16931557 16931692 -201105466 + FLAM_C SINE Alu 1 133 0 411 145 0 0 chr3 16931706 16931775 -201105383 + (GGAA)n Simple_repeat Simple_repeat 3 71 0 188 222 42 56 chr3 16931781 16931853 -201105305 + MIR SINE MIR 57 127 -135 1595 257 63 20 chr3 16932228 16932718 -201104440 - L1ME3 LINE L1 0 6162 5652 247 164 36 0 chr3 16932805 16932860 -201104298 - L1ME3 LINE L1 -517 5645 5589 932 233 51 19 chr3 16933337 16933552 -201103606 - MER58A DNA MER1_type -2 222 1 449 247 161 25 chr3 16933561 16933723 -201103435 + MER5A DNA MER1_type 6 189 0 1448 241 47 32 chr3 16933731 16934224 -201102934 - MER113 DNA MER1_type? 0 521 22 276 184 123 105 chr3 16934270 16934384 -201102774 + MIR SINE MIR 21 136 -72 251 246 0 15 chr3 16934505 16934570 -201102588 + LTR16C LTR ERVL 292 355 -136 937 281 121 23 chr3 16934916 16935346 -201101812 - MLT1K LTR MaLR -13 575 104 397 275 56 14 chr3 16935354 16935496 -201101662 - MIR SINE MIR -34 228 81 1578 248 42 10 chr3 16935808 16936216 -201100942 - LTR16C LTR ERVL -7 484 64 189 175 0 0 chr3 16937043 16937083 -201100075 + C-rich Low_complexity Low_complexity 4 43 0 1597 185 43 26 chr3 16937187 16937490 -201099668 + AluJo SINE Alu 1 308 -4 1861 164 40 0 chr3 16937494 16937795 -201099363 + AluSx SINE Alu 1 312 0 231 274 72 85 chr3 16938029 16938252 -201098906 - L1MC/D LINE L1 -1889 5919 5700 2346 87 0 3 chr3 16938369 16938657 -201098501 - AluSq SINE Alu -12 301 15 892 260 78 9 chr3 16938914 16939260 -201097898 + MLT2C1 LTR ERVL 1 370 -27 349 209 132 78 chr3 16939714 16939843 -201097315 - MIR3 SINE MIR -71 137 2 442 191 106 0 chr3 16941076 16941170 -201095988 + MIR SINE MIR 123 226 -36 264 319 150 13 chr3 16941902 16942128 -201095030 + L2 LINE L2 2628 2884 -430 310 252 189 42 chr3 16942276 16942419 -201094739 + L2 LINE L2 3150 3313 0 21 0 0 0 chr3 16942637 16942658 -201094500 + AT_rich Low_complexity Low_complexity 1 21 0 910 279 0 14 chr3 16942666 16942888 -201094270 - MER58A DNA MER1_type -5 219 1 288 53 0 0 chr3 16942944 16942982 -201094176 + (T)n Simple_repeat Simple_repeat 1 38 0 392 335 102 0 chr3 16943798 16943974 -201093184 + MIR3 SINE MIR 15 208 0 216 333 15 0 chr3 16944169 16944235 -201092923 - L2 LINE L2 0 3272 3206 624 299 6 18 chr3 16945113 16945277 -201091881 + MIR3 SINE MIR 28 189 -19 211 147 0 0 chr3 16945414 16945448 -201091710 - L2 LINE L2 -11 3302 3269 594 285 20 0 chr3 16945572 16945723 -201091435 + MIR SINE MIR 57 210 -52 651 254 25 51 chr3 16946614 16946851 -201090307 - MIR SINE MIR -2 260 33 599 198 88 44 chr3 16947465 16947647 -201089511 - Charlie8 DNA MER1_type -2141 276 87 271 251 68 13 chr3 16947781 16947912 -201089246 + MLT1J LTR MaLR 70 213 -233 216 308 106 71 chr3 16948127 16948325 -201088833 - MIR SINE MIR -41 221 17 550 263 127 51 chr3 16948915 16949231 -201087927 + MLT1I LTR MaLR 70 409 0 373 270 116 37 chr3 16949231 16949446 -201087712 - L2 LINE L2 -214 3058 2827 306 309 43 11 chr3 16950036 16950130 -201087028 - L2 LINE L2 -8 3264 3168 325 344 13 33 chr3 16950331 16950482 -201086676 + MER5A DNA MER1_type 40 187 -2 291 140 0 0 chr3 16950928 16950978 -201086180 + (CA)n Simple_repeat Simple_repeat 1 50 0 240 235 0 0 chr3 16951635 16951686 -201085472 - L2 LINE L2 0 3313 3263 543 209 27 0 chr3 16951758 16951868 -201085290 + MIR SINE MIR 52 164 -98 755 292 5 0 chr3 16951874 16952066 -201085092 - MIR SINE MIR -54 208 16 204 292 15 15 chr3 16952214 16952279 -201084879 - L2 LINE L2 -4 3309 3245 351 272 87 3 chr3 16953916 16954025 -201083133 - MIR SINE MIR -63 145 69 2082 139 0 3 chr3 16954025 16954312 -201082846 - AluSx SINE Alu -26 286 1 351 272 87 3 chr3 16954312 16954345 -201082813 - MIR SINE MIR -139 69 40 211 241 74 0 chr3 16955056 16955110 -201082048 - L2 LINE L2 -68 3204 3147 322 302 57 0 chr3 16955167 16955273 -201081885 - MIR SINE MIR -59 203 92 1030 224 47 0 chr3 16955755 16955969 -201081189 - MER58A DNA MER1_type 0 224 1 401 273 30 8 chr3 16956040 16956172 -201080986 - MER103 DNA DNA -18 148 14 3479 179 68 3 chr3 16956189 16956911 -201080247 + L1MB7 LINE L1 5416 6184 0 363 238 67 28 chr3 16957037 16957168 -201079990 - MIR3 SINE MIR -77 131 5 218 261 153 36 chr3 16957960 16958071 -201079087 - MIR SINE MIR -101 161 38 275 296 46 83 chr3 16958572 16958788 -201078370 + MIR SINE MIR 40 247 -15 396 276 73 16 chr3 16959043 16959166 -201077992 - MIR SINE MIR -112 150 21 2371 111 0 0 chr3 16959416 16959714 -201077444 + AluSq SINE Alu 1 298 -15 219 250 0 0 chr3 16960698 16960758 -201076400 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 453 314 222 33 chr3 16961036 16961558 -201075600 - L1MC4a LINE L1 -1614 6194 5574 877 284 174 3 chr3 16961991 16962382 -201074776 + L2 LINE L2 2856 3313 0 352 331 97 23 chr3 16962482 16962657 -201074501 + L2 LINE L2 2919 3106 -166 371 288 130 33 chr3 16962991 16963175 -201073983 - MIR SINE MIR 0 262 61 274 231 0 99 chr3 16963517 16963608 -201073550 - MIR SINE MIR -61 201 120 238 270 20 90 chr3 16963682 16963782 -201073376 - MIR SINE MIR -70 192 100 207 114 0 0 chr3 16963783 16963818 -201073340 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 1001 259 101 36 chr3 16963818 16964265 -201072893 - L2 LINE L2 -10 3303 2828 223 341 40 40 chr3 16964385 16964511 -201072647 + L2 LINE L2 3183 3308 -5 204 326 92 31 chr3 16965283 16965381 -201071777 + L3 LINE CR1 1214 1317 -260 247 224 30 0 chr3 16965513 16965580 -201071578 + MER103 DNA DNA 3 71 -95 235 207 329 0 chr3 16966502 16966584 -201070574 - MER5A DNA MER1_type -79 110 2 1291 247 119 43 chr3 16966591 16967288 -201069870 + L1ME3A LINE L1 4477 5226 -920 672 275 121 46 chr3 16967289 16967580 -201069578 + L1ME3A LINE L1 5258 5526 -644 2322 95 14 3 chr3 16967580 16967876 -201069282 - AluSx SINE Alu -13 299 1 672 275 121 46 chr3 16967876 16968232 -201068926 + L1ME3A LINE L1 5526 5947 -223 263 371 41 0 chr3 16968455 16968552 -201068606 - L3 LINE CR1 -15 1562 1462 516 291 102 0 chr3 16968569 16968696 -201068462 + MER91C DNA MER1_type 1 140 0 451 283 186 20 chr3 16968796 16969043 -201068115 - L3 LINE CR1 -86 1491 1204 205 282 65 73 chr3 16969863 16969987 -201067171 + MIR SINE MIR 85 207 -55 204 311 19 47 chr3 16970188 16970294 -201066864 - MIR3 SINE MIR -6 202 100 203 313 30 10 chr3 16970452 16970551 -201066607 + L2 LINE L2 3148 3248 -24 22 0 0 0 chr3 16970995 16971017 -201066141 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 16971084 16971107 -201066051 + AT_rich Low_complexity Low_complexity 1 23 0 466 324 7 0 chr3 16971915 16972060 -201065098 + MER117 DNA MER1_type 5 150 -47 682 301 46 19 chr3 16972206 16972465 -201064693 - MER102b DNA MER1_type -2 339 74 191 342 0 26 chr3 16972565 16972641 -201064517 - MIR3 SINE MIR -132 76 3 246 251 28 70 chr3 16973475 16973594 -201063564 + MIR SINE MIR 95 206 -56 27 0 0 0 chr3 16974681 16974708 -201062450 + AT_rich Low_complexity Low_complexity 1 27 0 228 282 94 17 chr3 16975720 16975837 -201061321 + MIR SINE MIR 92 217 -45 26 30 0 0 chr3 16976392 16976425 -201060733 + GC_rich Low_complexity Low_complexity 1 33 0 384 263 178 13 chr3 16976936 16977088 -201060070 - MER5A DNA MER1_type -6 183 7 398 297 43 49 chr3 16977226 16977411 -201059747 + MIR SINE MIR 79 262 0 324 308 0 33 chr3 16977483 16977574 -201059584 + L2 LINE L2 3172 3259 -13 222 224 0 20 chr3 16977578 16977627 -201059531 + GA-rich Low_complexity Low_complexity 4 51 0 308 335 44 46 chr3 16977859 16978292 -201058866 + L2 LINE L2 1711 2142 -1172 309 309 62 62 chr3 16978311 16978521 -201058637 + MIR SINE MIR 15 224 -38 2234 108 0 0 chr3 16978525 16978831 -201058327 - AluSx SINE Alu -6 306 1 889 179 0 71 chr3 16978904 16979128 -201058030 + AluJo SINE Alu 92 299 -13 2432 61 0 0 chr3 16979430 16979725 -201057433 + AluY SINE Alu 1 295 -16 215 382 15 23 chr3 16979910 16980041 -201057117 + MIR SINE MIR 16 145 -63 802 270 85 0 chr3 16980453 16980664 -201056494 + MIR SINE MIR 2 230 -32 991 105 0 0 chr3 16980858 16980991 -201056167 - AluSq/x SINE Alu -180 133 1 488 270 68 27 chr3 16981066 16981214 -201055944 - MER63A DNA MER1_type 0 210 57 315 306 122 58 chr3 16981397 16981792 -201055366 - L2 LINE L2 -447 2867 2448 485 226 184 42 chr3 16982219 16982387 -201054771 + MLT1J LTR MaLR 3 194 -355 226 184 0 0 chr3 16982602 16982640 -201054518 + MLT1F1 LTR MaLR 495 532 -35 234 246 0 18 chr3 16983243 16983300 -201053858 + MLT1I LTR MaLR 99 154 -395 289 197 231 51 chr3 16983455 16983572 -201053586 + MLT1I LTR MaLR 272 409 0 378 228 195 0 chr3 16983624 16983741 -201053417 - MIR SINE MIR -68 140 38 702 128 0 28 chr3 16983927 16984036 -201053122 + AluJb SINE Alu 2 107 -205 249 309 117 0 chr3 16984326 16984420 -201052738 + MER91C DNA MER1_type 1 105 -35 525 16 0 0 chr3 16984729 16984791 -201052367 + (CA)n Simple_repeat Simple_repeat 1 62 0 360 336 141 37 chr3 16984882 16984973 -201052185 - L2 LINE L2 -22 3250 3170 453 44 0 44 chr3 16984973 16985041 -201052117 + L1PA2 LINE L1 6091 6155 0 360 336 141 37 chr3 16985041 16985276 -201051882 - L2 LINE L2 -102 3170 2890 895 176 68 50 chr3 16985284 16985525 -201051633 + MER33 DNA MER1_type 31 279 -2306 1945 175 48 16 chr3 16985525 16985896 -201051262 + MLT1B LTR MaLR 4 386 -4 895 176 68 50 chr3 16985896 16985932 -201051226 + MER33 DNA MER1_type 279 313 -11 365 294 106 25 chr3 16986601 16986761 -201050397 - MIR SINE MIR -70 192 20 646 243 53 34 chr3 16986824 16987030 -201050128 - MLT1J1 LTR MaLR 0 446 237 576 274 95 37 chr3 16987118 16987359 -201049799 + MLT1J LTR MaLR 205 459 -52 368 185 49 12 chr3 16987375 16987456 -201049702 + MLT1J LTR MaLR 428 511 0 3197 142 8 8 chr3 16987611 16988120 -201049038 - L1MB3 LINE L1 -2 6181 5673 333 227 11 141 chr3 16988168 16988227 -201048931 - MLT1J1 LTR MaLR -285 161 96 2475 182 124 8 chr3 16988227 16988711 -201048447 - MLT1F LTR MaLR -1 541 2 333 227 11 141 chr3 16988711 16988836 -201048322 - MLT1J1 LTR MaLR -350 96 1 451 289 108 0 chr3 16989093 16989259 -201047899 + MIR SINE MIR 2 185 -77 1826 102 48 31 chr3 16989309 16989603 -201047555 - AluY SINE Alu -12 299 1 21 0 0 0 chr3 16989608 16989629 -201047529 + AT_rich Low_complexity Low_complexity 1 21 0 817 170 20 0 chr3 16989645 16989798 -201047360 + Ricksha_a DNA DNA 1 156 -1025 306 186 34 0 chr3 16989783 16989842 -201047316 + ERVL LTR ERVL 5643 5703 -61 * 8521 133 38 37 chr3 16989836 16990154 -201047004 + Ricksha DNA DNA 1690 2006 -1240 2540 7 0 0 chr3 16990154 16990471 -201046687 + AluY SINE Alu 1 317 0 8521 133 38 37 chr3 16990471 16991551 -201045607 + Ricksha DNA DNA 2006 3093 -153 2228 94 0 3 chr3 16991551 16991858 -201045300 - AluY SINE Alu -5 306 1 8521 133 38 37 chr3 16991858 16992006 -201045152 + Ricksha DNA DNA 3093 3239 -7 331 168 103 58 chr3 16992015 16992045 -201045113 + MER113 DNA MER1_type? 71 98 -423 3637 163 31 55 chr3 16992045 16992830 -201044328 - L1MB8 LINE L1 0 6178 5413 331 168 103 58 chr3 16992830 16992954 -201044204 + MER113 DNA MER1_type? 98 232 -289 189 243 29 43 chr3 16993012 16993082 -201044076 + MIR SINE MIR 194 262 0 321 68 0 0 chr3 16993500 16993544 -201043614 + (CAGGG)n Simple_repeat Simple_repeat 2 45 0 274 301 24 0 chr3 16993571 16993654 -201043504 - MIR SINE MIR -89 119 35 743 199 160 0 chr3 16993749 16993905 -201043253 + MER5A DNA MER1_type 3 183 -6 310 344 55 8 chr3 16993932 16994060 -201043098 - L2 LINE L2 -2 3270 3137 5437 190 17 13 chr3 16994268 16994429 -201042729 - L1MA10 LINE L1 0 6334 6175 5838 132 21 29 chr3 16994429 16995573 -201041585 - L1PA15 LINE L1 0 6165 5025 5437 190 17 13 chr3 16995573 16996868 -201040290 - L1MA10 LINE L1 -159 6175 4866 600 279 130 22 chr3 16996872 16997148 -201040010 - L2 LINE L2 0 3313 3008 290 242 16 0 chr3 16997247 16997309 -201039849 + MLT1K LTR MaLR 187 249 -339 535 325 0 6 chr3 16997574 16997731 -201039427 + MIR SINE MIR 49 204 -58 236 369 0 45 chr3 16997731 16997842 -201039316 + L2 LINE L2 3102 3207 -65 692 324 36 12 chr3 16998002 16998252 -201038906 - MIR SINE MIR -1 261 6 639 270 75 4 chr3 16998443 16998669 -201038489 - MIR SINE MIR -6 256 15 458 296 86 7 chr3 16999085 16999237 -201037921 + MIR SINE MIR 82 245 -17 278 270 34 22 chr3 16999421 16999510 -201037648 + MIR SINE MIR 56 145 -117 307 291 92 21 chr3 16999720 16999861 -201037297 + LTR16A LTR ERVL 16 166 -284 269 211 147 21 chr3 16999967 17000062 -201037096 + LTR16A LTR ERVL 344 450 0 850 213 112 0 chr3 17000329 17000526 -201036632 - MER58A DNA MER1_type 0 224 6 417 264 129 18 chr3 17000740 17000903 -201036255 + MER63A DNA MER1_type 30 210 0 331 294 18 18 chr3 17000914 17001077 -201036081 + L2 LINE L2 2920 3082 -190 2686 270 62 26 chr3 17001135 17001963 -201035195 - L1ME3 LINE L1 0 6162 5365 1635 78 0 5 chr3 17001963 17002182 -201034976 - AluY SINE Alu -18 293 76 2686 270 62 26 chr3 17002182 17002206 -201034952 - L1ME3 LINE L1 -797 5365 5343 2425 34 0 59 chr3 17002206 17002526 -201034632 + AluY SINE Alu 1 301 -10 180 0 0 0 chr3 17002532 17002552 -201034606 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2686 270 62 26 chr3 17002552 17003467 -201033691 - L1ME3 LINE L1 -823 5339 4321 498 196 68 42 chr3 17003525 17003699 -201033459 - L1MA10 LINE L1 -2 6332 5990 7922 213 67 41 chr3 17003707 17006727 -201030431 - L1ME1 LINE L1 -321 5845 2750 1354 231 77 39 chr3 17006822 17007329 -201029829 - L1ME3 LINE L1 -2054 4092 3567 181 214 0 43 chr3 17008271 17008341 -201028817 + CT-rich Low_complexity Low_complexity 2 68 0 1276 146 87 80 chr3 17009696 17009984 -201027174 - AluJo SINE Alu -22 290 1 192 262 0 24 chr3 17011031 17011073 -201026085 - MIR SINE MIR -5 257 217 * 271 301 153 68 chr3 17011041 17011277 -201025881 - L2 LINE L2 -20 3252 2997 1219 266 119 7 chr3 17011437 17011899 -201025259 + LTR33 LTR ERVL 1 514 -7 208 341 126 35 chr3 17011954 17012493 -201024665 - L2 LINE L2 -578 2736 2149 1710 175 78 27 chr3 17013700 17014071 -201023087 + MLT1B LTR MaLR 1 390 0 439 226 146 33 chr3 17014304 17014516 -201022642 - MIR SINE MIR -19 243 8 2519 43 0 0 chr3 17015257 17015556 -201021602 + AluY SINE Alu 1 299 -12 488 287 91 48 chr3 17016895 17017125 -201020033 - MIR SINE MIR -2 260 21 623 265 100 22 chr3 17018082 17018312 -201018846 + LTR16C LTR ERVL 244 491 0 264 288 47 34 chr3 17018757 17018916 -201018242 + MIR SINE MIR 34 190 -18 586 252 111 45 chr3 17018936 17019277 -201017881 + MLT1J2 LTR MaLR 45 450 0 695 216 226 19 chr3 17019329 17019537 -201017621 - MIR SINE MIR -11 251 1 206 289 0 0 chr3 17019558 17019603 -201017555 + MIR SINE MIR 206 250 -12 222 274 81 0 chr3 17020753 17020815 -201016343 - MIR SINE MIR -112 150 84 213 308 31 0 chr3 17020858 17020923 -201016235 + MER5B DNA MER1_type 1 67 -111 302 321 28 18 chr3 17021123 17021232 -201015926 - MIR3 SINE MIR -16 192 83 202 258 70 27 chr3 17021846 17021971 -201015187 + MIR SINE MIR 19 147 -61 620 230 86 86 chr3 17022346 17022650 -201014508 - L1ME3A LINE L1 -8 6162 5859 594 215 98 0 chr3 17022647 17022810 -201014348 - L1ME3A LINE L1 -727 5435 5257 * 1098 262 19 22 chr3 17024283 17024596 -201012562 - MLT1I LTR MaLR 0 409 98 473 144 144 0 chr3 17024862 17024966 -201012192 + MER103 DNA DNA 2 120 -46 624 204 32 81 chr3 17025003 17025189 -201011969 + MER5B DNA MER1_type 1 177 -1 290 309 43 21 chr3 17025569 17025663 -201011495 + L2 LINE L2 3161 3256 -16 219 284 46 55 chr3 17026241 17026350 -201010808 - MER5A DNA MER1_type 0 189 82 1678 219 73 2 chr3 17026438 17026889 -201010269 + LTR16C LTR ERVL 1 483 -8 393 271 16 25 chr3 17027321 17027443 -201009715 + Charlie8 DNA MER1_type 103 223 -2194 418 322 82 28 chr3 17028728 17028983 -201008175 - L2 LINE L2 -168 3104 2836 254 198 139 0 chr3 17029206 17029292 -201007866 - MIR SINE MIR -71 137 40 225 224 35 138 chr3 17029718 17029834 -201007324 - MIR3 SINE MIR -47 161 58 192 224 0 0 chr3 17030105 17030172 -201006986 + A-rich Low_complexity Low_complexity 1 67 0 456 280 63 21 chr3 17030303 17030492 -201006666 - MER117 DNA MER1_type 0 197 1 406 242 105 17 chr3 17030542 17030671 -201006487 - MIR SINE MIR -62 146 22 685 306 23 31 chr3 17031715 17031976 -201005182 - MIR SINE MIR -2 260 2 279 345 17 11 chr3 17032154 17032328 -201004830 + MER117 DNA MER1_type 6 180 -17 266 179 291 0 chr3 17032691 17032809 -201004349 - MIR SINE MIR -80 182 23 267 182 0 18 chr3 17032852 17032907 -201004251 + MER5B DNA MER1_type 119 172 -6 428 302 102 8 chr3 17032917 17033181 -201003977 - MIR SINE MIR -19 243 8 293 226 104 43 chr3 17033186 17033301 -201003857 + L1ME2 LINE L1 6041 6162 -2 484 229 49 33 chr3 17033543 17033665 -201003493 + L2 LINE L2 3147 3270 -2 1009 166 13 0 chr3 17034108 17034265 -201002893 + FRAM SINE Alu 2 160 -6 428 221 55 19 chr3 17034719 17034847 -201002311 + MIR SINE MIR 60 191 -62 336 271 35 12 chr3 17034967 17035052 -201002106 + MIR SINE MIR 12 98 -164 233 213 0 21 chr3 17035102 17035149 -201002009 + L2 LINE L2 3217 3262 -10 382 250 30 0 chr3 17035657 17035757 -201001401 - MER5A DNA MER1_type -83 106 4 643 253 110 0 chr3 17036468 17036622 -201000536 - MER5B DNA MER1_type -6 172 2 2603 180 5 0 chr3 17037638 17038060 -200999098 - MSTB LTR MaLR 0 426 3 190 183 49 12 chr3 17038798 17038880 -200998278 + CT-rich Low_complexity Low_complexity 2 86 0 468 265 15 22 chr3 17039163 17039299 -200997859 - L2 LINE L2 0 3272 3138 471 345 113 14 chr3 17039836 17040111 -200997047 + L1ME LINE L1 5517 5818 -303 290 250 217 0 chr3 17040131 17040223 -200996935 - MIR3 SINE MIR -8 200 89 668 213 45 93 chr3 17040509 17040726 -200996432 - MER113 DNA MER1_type? -191 330 104 1786 123 77 0 chr3 17040726 17040986 -200996172 + AluJb SINE Alu 1 280 -32 306 0 0 0 chr3 17040986 17041020 -200996138 + (TAA)n Simple_repeat Simple_repeat 2 35 0 668 213 45 93 chr3 17041020 17041135 -200996023 - MER113 DNA MER1_type? -415 106 13 1143 264 140 5 chr3 17041522 17042186 -200994972 - L2 LINE L2 0 3313 2565 411 296 22 15 chr3 17042503 17042638 -200994520 + L2 LINE L2 3137 3272 0 228 247 0 0 chr3 17042653 17042738 -200994420 + (TGGA)n Simple_repeat Simple_repeat 4 88 0 1362 134 11 22 chr3 17042774 17042801 -200994357 - L1MA9 LINE L1 -17 6161 6135 634 153 9 0 chr3 17042801 17042912 -200994246 - L1MA9 LINE L1 -5 6307 6196 1362 134 11 22 chr3 17042912 17043150 -200994008 - L1MA9 LINE L1 -43 6135 5893 208 328 0 0 chr3 17043601 17043659 -200993499 - MIR SINE MIR -59 149 92 376 246 70 18 chr3 17043676 17043790 -200993368 - L2 LINE L2 -218 3054 2935 218 336 44 26 chr3 17043840 17043953 -200993205 - L2 LINE L2 -468 2846 2732 827 231 99 18 chr3 17043989 17044210 -200992948 + MIR SINE MIR 4 242 -20 206 320 39 39 chr3 17044278 17044381 -200992777 - L2 LINE L2 -606 2708 2606 1036 209 33 9 chr3 17044381 17044591 -200992567 + MER58A DNA MER1_type 8 222 -2 222 227 187 13 chr3 17045370 17045445 -200991713 + MIR SINE MIR 58 145 -117 569 206 44 37 chr3 17045756 17045892 -200991266 - MIR SINE MIR -56 152 16 493 326 62 6 chr3 17046195 17046373 -200990785 + MIR SINE MIR 15 202 -60 201 286 18 0 chr3 17046426 17046482 -200990676 + C-rich Low_complexity Low_complexity 5 61 0 670 261 22 6 chr3 17046856 17047036 -200990122 + MIR SINE MIR 5 187 -75 23 33 0 0 chr3 17047036 17047066 -200990092 + AT_rich Low_complexity Low_complexity 1 30 0 254 229 31 0 chr3 17047098 17047194 -200989964 + (TA)n Simple_repeat Simple_repeat 2 100 0 281 172 40 17 chr3 17047213 17047387 -200989771 + (TA)n Simple_repeat Simple_repeat 2 179 0 303 166 61 31 chr3 17047404 17047567 -200989591 + (TA)n Simple_repeat Simple_repeat 2 169 0 * 334 166 39 72 chr3 17047474 17047655 -200989503 + (TTATA)n Simple_repeat Simple_repeat 4 178 0 217 193 45 45 chr3 17047588 17047764 -200989394 + (TTA)n Simple_repeat Simple_repeat 3 178 0 * 341 195 27 60 chr3 17047710 17047822 -200989336 + (TATAA)n Simple_repeat Simple_repeat 2 107 -73 211 71 48 0 chr3 17047822 17047864 -200989294 + (TTATA)n Simple_repeat Simple_repeat 5 48 0 341 195 27 60 chr3 17047864 17047936 -200989222 + (TATAA)n Simple_repeat Simple_repeat 107 180 0 192 268 109 36 chr3 17049214 17049352 -200987806 + MIR SINE MIR 40 187 -75 219 88 0 0 chr3 17049400 17049434 -200987724 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 793 280 127 26 chr3 17049459 17049970 -200987188 - L2 LINE L2 -58 3255 2677 336 189 0 0 chr3 17050397 17050471 -200986687 + GA-rich Low_complexity Low_complexity 1 74 0 899 199 58 6 chr3 17051069 17051240 -200985918 + MER5A DNA MER1_type 1 180 -9 501 275 14 7 chr3 17051271 17051409 -200985749 + MIR SINE MIR 11 149 -113 537 44 0 0 chr3 17051483 17051551 -200985607 + (ATG)n Simple_repeat Simple_repeat 1 68 0 807 271 152 27 chr3 17051736 17052138 -200985020 - L2 LINE L2 -1 3312 2861 193 304 240 0 chr3 17052153 17052278 -200984880 + MIR SINE MIR 97 251 -11 559 288 6 6 chr3 17052802 17052962 -200984196 + MIR SINE MIR 103 262 0 231 409 83 13 chr3 17053223 17053453 -200983705 + L2 LINE L2 3026 3271 -1 3233 236 53 52 chr3 17054129 17054837 -200982321 - L1MC4 LINE L1 -161 7881 7170 1842 139 10 33 chr3 17054837 17055138 -200982020 - AluJo SINE Alu -18 294 1 3233 236 53 52 chr3 17055138 17055451 -200981707 - L1MC4 LINE L1 -872 7170 6859 348 244 168 8 chr3 17055557 17055676 -200981482 + MIR SINE MIR 10 147 -115 358 64 0 0 chr3 17055929 17055976 -200981182 - L1PA5 LINE L1 -409 5746 5700 3301 36 0 0 chr3 17055976 17056363 -200980795 + L1PA5 LINE L1 5759 6147 -7 230 299 41 52 chr3 17056616 17056713 -200980445 + L2 LINE L2 3161 3256 -16 342 320 36 56 chr3 17057230 17057567 -200979591 + L2 LINE L2 1813 2142 -1172 297 314 62 62 chr3 17057586 17057796 -200979362 + MIR SINE MIR 15 224 -38 2378 113 0 0 chr3 17057797 17058106 -200979052 - AluSx SINE Alu -3 309 1 994 179 0 71 chr3 17058268 17058492 -200978666 + AluJo SINE Alu 92 299 -13 2576 61 0 0 chr3 17058794 17059089 -200978069 + AluY SINE Alu 1 295 -16 226 382 15 23 chr3 17059274 17059405 -200977753 + MIR SINE MIR 16 145 -63 799 270 85 0 chr3 17059817 17060028 -200977130 + MIR SINE MIR 2 230 -32 1057 105 0 0 chr3 17060222 17060355 -200976803 - AluSq/x SINE Alu -180 133 1 448 270 68 27 chr3 17060430 17060578 -200976580 - MER63A DNA MER1_type 0 210 57 342 306 122 58 chr3 17060761 17061156 -200976002 - L2 LINE L2 -447 2867 2448 420 225 175 44 chr3 17061591 17061751 -200975407 + MLT1H LTR MaLR 14 194 -355 255 248 205 26 chr3 17062819 17062936 -200974222 + MLT1I LTR MaLR 272 409 0 378 228 195 0 chr3 17062988 17063105 -200974053 - MIR SINE MIR -68 140 38 679 130 9 28 chr3 17063289 17063397 -200973761 + AluJb SINE Alu 2 107 -205 263 319 117 0 chr3 17063687 17063781 -200973377 - MER91C DNA MER1_type 0 140 36 507 17 0 0 chr3 17064093 17064153 -200973005 + (CA)n Simple_repeat Simple_repeat 1 60 0 391 333 141 37 chr3 17064244 17064335 -200972823 - L2 LINE L2 -22 3250 3170 428 59 0 44 chr3 17064335 17064403 -200972755 + L1PA2 LINE L1 6091 6155 0 391 333 141 37 chr3 17064403 17064638 -200972520 - L2 LINE L2 -102 3170 2890 833 171 84 51 chr3 17064646 17064883 -200972275 + MER33 DNA MER1_type 31 280 -2305 1977 175 48 16 chr3 17064883 17065254 -200971904 + MLT1B LTR MaLR 4 386 -4 833 171 84 51 chr3 17065254 17065290 -200971868 + MER33 DNA MER1_type 280 313 -11 366 294 106 25 chr3 17065959 17066119 -200971039 - MIR SINE MIR -70 192 20 588 243 53 34 chr3 17066182 17066388 -200970770 - MLT1J1 LTR MaLR 0 446 237 525 295 87 29 chr3 17066476 17066717 -200970441 + MLT1J LTR MaLR 205 459 -52 351 185 49 12 chr3 17066733 17066814 -200970344 + MLT1J LTR MaLR 428 511 0 3201 142 8 8 chr3 17066969 17067478 -200969680 - L1MB3 LINE L1 -2 6181 5673 271 299 16 47 chr3 17067527 17067585 -200969573 - MLT1J LTR MaLR -312 199 141 2382 185 121 12 chr3 17067585 17068072 -200969086 - MLT1F LTR MaLR -1 541 2 271 299 16 47 chr3 17068072 17068140 -200969018 - MLT1J LTR MaLR -370 141 77 403 266 42 76 chr3 17068529 17068792 -200968366 - L1M4b LINE L1 -4612 2526 2273 * 1576 224 21 38 chr3 17068760 17069297 -200967861 - L1M4b LINE L1 -5037 1818 1281 2597 71 0 0 chr3 17069297 17069608 -200967550 - AluY SINE Alu 0 311 1 1576 224 21 38 chr3 17069608 17069660 -200967498 - L1M4b LINE L1 -5574 1281 1230 1424 279 23 17 chr3 17069731 17070212 -200966946 - L1M4b LINE L1 -5771 1088 605 392 342 47 29 chr3 17070275 17070550 -200966608 - L1M4b LINE L1 -6283 576 297 4840 82 18 86 chr3 17070696 17071714 -200965444 - L1P LINE L1 -829 5317 4369 * 8298 43 0 1 chr3 17071713 17072710 -200964448 - L1P LINE L1 -1163 4983 3988 2176 113 7 0 chr3 17073658 17073951 -200963207 + AluSx SINE Alu 5 299 -13 2288 115 0 0 chr3 17074250 17074554 -200962604 + AluSx SINE Alu 1 304 -8 357 298 115 34 chr3 17074558 17074793 -200962365 + MIR SINE MIR 9 262 0 1021 206 123 83 chr3 17075299 17075649 -200961509 - MLT1A1 LTR MaLR -1 364 1 30 27 0 0 chr3 17077471 17077508 -200959650 + AT_rich Low_complexity Low_complexity 1 37 0 2971 134 0 7 chr3 17077595 17078035 -200959123 - LTR9B LTR ERV1 0 644 208 565 251 70 20 chr3 17078235 17078434 -200958724 + L1ME LINE L1 5313 5521 -645 * 30980 46 2 3 chr3 17078403 17082778 -200954380 + L1PA3 LINE L1 1524 5892 -263 866 258 57 9 chr3 17083986 17084405 -200952753 - L1MEc LINE L1 -2869 3260 2822 1672 179 188 8 chr3 17084661 17085018 -200952140 + MSTC LTR MaLR 8 428 0 740 278 163 18 chr3 17085022 17085072 -200952086 + MLT1E1 LTR MaLR 89 130 -463 3151 86 32 5 chr3 17085072 17085109 -200952049 - MLT2A1 LTR ERVL 0 444 410 333 0 0 0 chr3 17085109 17085146 -200952012 + (CA)n Simple_repeat Simple_repeat 2 38 0 3151 86 32 5 chr3 17085146 17085540 -200951618 - MLT2A1 LTR ERVL -34 410 1 740 278 163 18 chr3 17085540 17085766 -200951392 + MLT1E1 LTR MaLR 130 405 -188 802 257 6 6 chr3 17085890 17086069 -200951089 + MLT1E1 LTR MaLR 476 654 0 371 280 36 44 chr3 17086087 17086337 -200950821 - L1MEc LINE L1 -3744 2385 2138 2392 92 0 3 chr3 17086938 17087244 -200949914 - AluY SINE Alu -6 305 1 255 252 31 3 chr3 17087392 17087491 -200949667 - L1MEc LINE L1 -4863 1294 1156 6257 250 55 42 chr3 17087971 17088788 -200948370 - L1MEc LINE L1 -3943 2453 1648 3374 184 37 18 chr3 17088788 17089165 -200947993 - L1MB7 LINE L1 -1 6183 5786 2484 162 18 0 chr3 17089165 17089554 -200947604 - MSTD LTR MaLR 0 396 1 3374 184 37 18 chr3 17089554 17089854 -200947304 - L1MB7 LINE L1 -398 5786 5493 6257 250 55 42 chr3 17089854 17091354 -200945804 - L1MEc LINE L1 -4748 1648 102 291 85 0 0 chr3 17091354 17091401 -200945757 + (TG)n Simple_repeat Simple_repeat 2 48 0 6257 250 55 42 chr3 17091401 17091496 -200945662 - L1MEc LINE L1 -6294 102 10 1743 209 74 19 chr3 17091751 17092172 -200944986 - L1ME3A LINE L1 -9 6161 5718 433 250 8 16 chr3 17092191 17092315 -200944843 - L1ME3A LINE L1 -1120 5026 4904 1929 189 25 27 chr3 17092365 17092560 -200944598 + MLT1A1 LTR MaLR 1 196 -169 2708 90 98 5 chr3 17092560 17092970 -200944188 - LTR7 LTR ERV1 -2 448 1 1929 189 25 27 chr3 17092970 17093140 -200944018 + MLT1A1 LTR MaLR 196 365 0 716 220 54 11 chr3 17093377 17093563 -200943595 + MIR SINE MIR 29 222 -40 764 212 2 22 chr3 17093996 17094358 -200942800 - MLT1G1 LTR MaLR 0 555 140 1412 113 86 0 chr3 17094362 17094583 -200942575 - Tigger2a DNA MER2_type 0 434 195 1267 98 0 6 chr3 17094583 17094747 -200942411 + AluSg/x SINE Alu 133 295 -17 1198 153 0 30 chr3 17094750 17094953 -200942205 - Tigger2a DNA MER2_type -237 197 1 891 240 0 6 chr3 17094958 17095133 -200942025 - MLT1G1 LTR MaLR -421 174 1 402 227 55 0 chr3 17095656 17095766 -200941392 + L1MD3 LINE L1 7879 7994 -1 341 321 53 49 chr3 17095755 17096166 -200940992 - L1MEc LINE L1 -5196 923 511 * 189 291 223 0 chr3 17096391 17096494 -200940664 + MIR SINE MIR 60 185 -77 355 281 10 10 chr3 17096626 17096722 -200940436 + MIR3 SINE MIR 15 110 -98 294 379 23 0 chr3 17096735 17096867 -200940291 - L2 LINE L2 0 3272 3138 1173 163 38 14 chr3 17096904 17097113 -200940045 + MER20 DNA MER1_type 6 219 0 260 224 60 0 chr3 17097235 17097302 -200939856 - L2 LINE L2 -285 2987 2917 254 253 75 124 chr3 17098006 17098192 -200938966 + MER5A DNA MER1_type 7 183 -6 284 323 87 0 chr3 17099066 17099193 -200937965 + MIR SINE MIR 16 153 -55 182 346 25 12 chr3 17100051 17100132 -200937026 + L2 LINE L2 3230 3311 -2 301 267 0 13 chr3 17100614 17100689 -200936469 + L2 LINE L2 3225 3298 -15 377 290 94 37 chr3 17100710 17101007 -200936151 - MLT1I LTR MaLR -18 428 68 289 275 28 55 chr3 17101117 17101338 -200935820 - MIR SINE MIR -30 232 18 315 224 0 0 chr3 17102727 17102803 -200934355 + (CA)n Simple_repeat Simple_repeat 1 76 0 1995 182 14 6 chr3 17102818 17103180 -200933978 + MLT1A1 LTR MaLR 1 365 0 1693 120 25 104 chr3 17103599 17103925 -200933233 - AluYb8 SINE Alu -18 300 1 296 305 51 8 chr3 17104253 17104371 -200932787 - MIR SINE MIR -48 214 92 532 192 120 48 chr3 17104617 17104784 -200932374 + MIR SINE MIR 83 261 -1 1050 63 0 14 chr3 17104956 17105098 -200932060 - L1PA5 LINE L1 0 6154 6015 345 248 30 10 chr3 17105618 17105719 -200931439 - L2 LINE L2 0 3272 3170 191 206 29 0 chr3 17106012 17106080 -200931078 - L2 LINE L2 -404 2909 2840 * 218 279 113 60 chr3 17106078 17106384 -200930774 + L2 LINE L2 2424 2761 -553 1129 179 20 0 chr3 17106384 17106585 -200930573 - MER3 DNA MER1_type 0 209 5 218 279 113 60 chr3 17106585 17106711 -200930447 + L2 LINE L2 2761 2879 -435 258 116 0 0 chr3 17106834 17106877 -200930281 + (TG)n Simple_repeat Simple_repeat 2 44 0 1292 267 82 57 chr3 17106884 17106926 -200930232 - L1MC4a LINE L1 -209 5912 5873 780 171 20 0 chr3 17106926 17107078 -200930080 + L1MB7 LINE L1 6030 6184 0 1292 267 82 57 chr3 17107078 17108202 -200928956 - L1MC4a LINE L1 -248 5873 4741 1369 250 80 6 chr3 17108292 17108656 -200928502 - LTR16C LTR ERVL -13 478 88 190 355 43 48 chr3 17109060 17109291 -200927867 - L3 LINE CR1 -588 989 760 198 203 189 0 chr3 17109799 17109873 -200927285 + MIR SINE MIR 60 147 -115 704 263 61 0 chr3 17109883 17110081 -200927077 - LTR16A1 LTR ERVL -2 455 246 22 0 0 0 chr3 17110438 17110460 -200926698 + AT_rich Low_complexity Low_complexity 1 22 0 213 39 0 0 chr3 17111540 17111566 -200925592 + (CA)n Simple_repeat Simple_repeat 1 26 0 216 303 17 42 chr3 17111569 17111688 -200925470 - MIR SINE MIR -59 149 34 587 292 72 0 chr3 17111906 17112115 -200925043 + Charlie8 DNA MER1_type 41 264 -2153 633 301 86 63 chr3 17116156 17117028 -200920130 + L2 LINE L2 1880 2771 -543 274 152 22 0 chr3 17117033 17117079 -200920079 - MER3 DNA MER1_type 0 209 163 685 203 38 0 chr3 17117079 17117212 -200919946 - FLAM_C SINE Alu -4 139 2 689 208 84 7 chr3 17117213 17117367 -200919791 - MER3 DNA MER1_type -43 166 1 217 325 149 16 chr3 17117401 17117595 -200919563 + L2 LINE L2 2804 3023 -249 331 109 0 31 chr3 17117604 17117668 -200919490 + (TGGA)n Simple_repeat Simple_repeat 2 63 0 2030 122 71 40 chr3 17117668 17118021 -200919137 + THE1B LTR MaLR 1 364 0 5191 77 20 10 chr3 17118021 17118714 -200918444 + THE1B-int LTR MaLR 1 700 -880 4276 98 2 0 chr3 17118700 17119262 -200917896 + THE1B-int LTR MaLR 1018 1580 0 * 2099 135 72 29 chr3 17119262 17119611 -200917547 + THE1B LTR MaLR 1 364 0 913 131 17 0 chr3 17119625 17119800 -200917358 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 3401 174 41 0 chr3 17120541 17121126 -200916032 + L1MB3 LINE L1 5573 6181 -2 309 314 73 0 chr3 17121645 17121769 -200915389 - MIR SINE MIR -21 241 109 721 315 14 0 chr3 17122025 17122247 -200914911 - MIR SINE MIR -15 247 23 372 269 106 14 chr3 17122256 17122397 -200914761 + L2 LINE L2 3116 3269 -3 274 259 159 59 chr3 17122745 17122915 -200914243 - MER5A DNA MER1_type -1 188 2 534 291 42 12 chr3 17123325 17123490 -200913668 + MER5A DNA MER1_type 20 189 0 368 286 36 0 chr3 17123511 17123623 -200913535 + MER5A DNA MER1_type 4 119 -70 731 235 155 79 chr3 17124576 17125193 -200911965 - L2 LINE L2 -16 3297 2625 312 279 27 0 chr3 17125227 17125338 -200911820 + L2 LINE L2 2896 3009 -263 21501 65 2 1 chr3 17125513 17128405 -200908753 + L1P LINE L1 399 3292 -2854 22119 44 3 1 chr3 17128516 17131667 -200905491 - L1P1 LINE L1 -498 5657 2500 1973 130 0 10 chr3 17134149 17134441 -200902717 - AluJb SINE Alu -23 289 1 384 287 132 12 chr3 17134595 17134762 -200902396 - MIR SINE MIR -64 198 12 7571 44 0 2 chr3 17134822 17136084 -200901074 + L1PA5 LINE L1 4894 6153 -1 2563 261 14 13 chr3 17136084 17136916 -200900242 - L1M4 LINE L1 -2613 3533 2701 269 342 68 27 chr3 17137373 17137636 -200899522 + L1M4 LINE L1 4641 4914 -1232 186 43 0 0 chr3 17138386 17138409 -200898749 + (TG)n Simple_repeat Simple_repeat 1 23 0 267 146 0 0 chr3 17140228 17140283 -200896875 + (TA)n Simple_repeat Simple_repeat 2 56 0 201 227 30 45 chr3 17142310 17142376 -200894782 + MIR3 SINE MIR 107 171 -37 * 297 253 24 48 chr3 17142374 17142500 -200894658 + MIR3 SINE MIR 11 131 -91 390 258 89 8 chr3 17148811 17148935 -200888223 + MIR SINE MIR 48 181 -81 480 45 0 0 chr3 17150661 17150728 -200886430 - AluSp/q SINE Alu -4 309 243 345 280 61 30 chr3 17150762 17150894 -200886264 + MIR SINE MIR 10 145 -117 183 189 0 0 chr3 17151729 17151766 -200885392 - MIR3 SINE MIR -22 186 150 841 271 74 13 chr3 17151927 17152226 -200884932 - MER113 DNA MER1_type? -197 324 8 2100 100 7 0 chr3 17153456 17153761 -200883397 - AluSx SINE Alu 0 307 1 253 260 0 0 chr3 17154154 17154227 -200882931 + MIR SINE MIR 74 146 -62 440 218 12 11 chr3 17154286 17154421 -200882737 + MIR SINE MIR 37 149 -59 445 248 6 64 chr3 17154670 17154827 -200882331 + MIR3 SINE MIR 16 163 -45 245 338 55 7 chr3 17155614 17155759 -200881399 - L1ME4a LINE L1 -9 6112 5961 345 195 18 0 chr3 17156845 17156928 -200880230 + MIR SINE MIR 100 183 -62 289 181 66 0 chr3 17157262 17157344 -200879814 + MIR SINE MIR 36 131 -77 323 325 20 5 chr3 17159993 17160190 -200876968 + L2 LINE L2 1893 2092 -1222 188 274 295 0 chr3 17160950 17161045 -200876113 + L2 LINE L2 3150 3272 0 429 161 74 0 chr3 17161219 17161300 -200875858 - MIR SINE MIR -65 143 57 1963 153 0 6 chr3 17161323 17161637 -200875521 + AluJo SINE Alu 1 312 0 207 261 31 0 chr3 17162397 17162462 -200874696 - MIR SINE MIR -80 128 62 403 277 115 0 chr3 17162868 17162998 -200874160 - MER117 DNA MER1_type -14 183 39 1865 203 80 20 chr3 17163742 17164180 -200872978 + MLT1C LTR MaLR 4 467 0 270 296 98 15 chr3 17164582 17164714 -200872444 + L3 LINE CR1 1336 1478 -99 346 373 26 31 chr3 17165067 17165260 -200871898 - L3 LINE CR1 -16 1561 1370 223 259 0 0 chr3 17165469 17165523 -200871635 - L2 LINE L2 -213 3059 3006 222 248 101 28 chr3 17165516 17165625 -200871533 - L2 LINE L2 -23 3249 3133 * 256 269 45 0 chr3 17165999 17166066 -200871092 + MIR SINE MIR 114 183 -79 198 358 60 7 chr3 17166166 17166317 -200870841 + L2 LINE L2 2899 3057 -215 21 0 0 0 chr3 17166510 17166531 -200870627 + AT_rich Low_complexity Low_complexity 1 21 0 201 289 333 0 chr3 17167389 17167479 -200869679 - MIR3 SINE MIR -52 156 37 352 263 70 7 chr3 17167647 17167800 -200869358 - MIR3 SINE MIR -16 192 24 2708 19 0 6 chr3 17167944 17168257 -200868901 + AluY SINE Alu 1 311 0 372 43 0 0 chr3 17168295 17168341 -200868817 + (TG)n Simple_repeat Simple_repeat 1 46 0 268 286 143 0 chr3 17168366 17168464 -200868694 + MIR SINE MIR 35 146 -62 711 238 119 18 chr3 17168486 17168713 -200868445 - MER112 DNA MER1_type 0 260 11 297 0 0 0 chr3 17169117 17169150 -200868008 + (GA)n Simple_repeat Simple_repeat 1 33 0 220 281 16 16 chr3 17169200 17169264 -200867894 - L2 LINE L2 0 3272 3209 467 296 87 43 chr3 17169322 17169552 -200867606 - MIR SINE MIR -7 255 16 383 313 45 0 chr3 17169616 17169750 -200867408 - MIR3 SINE MIR -7 201 62 305 146 0 0 chr3 17170734 17170782 -200866376 - MIR SINE MIR -75 133 86 746 189 33 50 chr3 17171362 17171542 -200865616 + MER5B DNA MER1_type 2 178 0 293 225 28 0 chr3 17171546 17171617 -200865541 - MIR3 SINE MIR -50 158 86 2084 229 51 15 chr3 17172740 17173285 -200863873 - L1MD2 LINE L1 -9 6350 5786 441 150 12 12 chr3 17173308 17173388 -200863770 - MER116 DNA Mariner 0 80 1 562 128 0 0 chr3 17173392 17173470 -200863688 - AluS SINE Alu -234 78 1 274 233 87 10 chr3 17173493 17173596 -200863562 - L1ME LINE L1 -296 5866 5756 325 331 55 0 chr3 17173772 17173917 -200863241 + L2 LINE L2 2900 3052 -220 264 345 12 0 chr3 17173950 17174034 -200863124 + L2 LINE L2 3188 3272 0 270 226 0 0 chr3 17174634 17174687 -200862471 + MIR3 SINE MIR 116 168 -40 365 245 37 43 chr3 17174945 17175079 -200862079 - L1MCa LINE L1 -1339 6983 2001 3969 155 31 12 chr3 17175838 17176556 -200860602 + L1MB3 LINE L1 5453 6183 0 2029 136 0 13 chr3 17176582 17176898 -200860260 + AluSx SINE Alu 1 312 0 293 361 62 5 chr3 17178136 17178344 -200858814 + L2 LINE L2 2813 3032 -240 180 360 11 22 chr3 17178328 17178417 -200858741 + MIR SINE MIR 60 147 -115 * 281 316 10 41 chr3 17178528 17178626 -200858532 - MIR SINE MIR 0 262 168 276 366 68 14 chr3 17178670 17178893 -200858265 + MIR SINE MIR 17 247 -15 * 548 313 0 0 chr3 17178882 17179032 -200858126 - MIR SINE MIR -100 162 13 330 288 212 0 chr3 17179039 17179157 -200858001 + MIR3 SINE MIR 30 172 -36 472 191 6 24 chr3 17179440 17179608 -200857550 + (TCCA)n Simple_repeat Simple_repeat 2 166 0 941 209 11 7 chr3 17179647 17179939 -200857219 + (TCCA)n Simple_repeat Simple_repeat 1 293 0 196 322 0 0 chr3 17180499 17180558 -200856600 + MIR SINE MIR 63 121 -87 629 227 213 0 chr3 17180637 17180844 -200856314 - MIR SINE MIR 0 262 12 2406 201 87 14 chr3 17182042 17182550 -200854608 + MLT1H LTR MaLR 2 546 -3 320 316 105 0 chr3 17183536 17183669 -200853489 + HAL1b LINE L1 1202 1348 0 246 318 96 44 chr3 17184137 17184378 -200852780 - MIR3 SINE MIR -3 259 11 976 160 16 94 chr3 17184441 17184758 -200852400 + MER33 DNA MER1_type 6 297 -2327 843 146 8 8 chr3 17184758 17184888 -200852270 - FLAM_C SINE Alu -2 131 2 976 160 16 94 chr3 17184888 17184951 -200852207 + MER33 DNA MER1_type 297 363 0 852 241 20 5 chr3 17186067 17186266 -200850892 + Charlie8 DNA MER1_type 72 273 -2144 626 237 39 56 chr3 17186739 17186971 -200850187 + MIR SINE MIR 28 255 -7 222 255 0 0 chr3 17186951 17186998 -200850160 + L2 LINE L2 3264 3310 -3 * 1013 241 70 70 chr3 17187069 17187443 -200849715 - L2 LINE L2 0 3313 2940 299 211 0 0 chr3 17187447 17187504 -200849654 - MIR SINE MIR -67 141 85 358 267 107 7 chr3 17187888 17188038 -200849120 + LTR16A1 LTR ERVL 263 427 -30 312 325 18 0 chr3 17188698 17188812 -200848346 + L2 LINE L2 2658 2773 -541 553 240 91 11 chr3 17188869 17189044 -200848114 - MIR SINE MIR -45 217 29 251 321 0 0 chr3 17189153 17189234 -200847924 - MIR3 SINE MIR -50 158 78 307 89 36 0 chr3 17190764 17190820 -200846338 + GA-rich Low_complexity Low_complexity 2 59 0 371 270 92 25 chr3 17191453 17191616 -200845542 - MIR SINE MIR -28 234 61 341 266 0 81 chr3 17191902 17192026 -200845132 - MIR SINE MIR -46 216 103 22 35 0 0 chr3 17192333 17192362 -200844796 + AT_rich Low_complexity Low_complexity 1 29 0 249 306 0 0 chr3 17192924 17192996 -200844162 + MIR SINE MIR 76 147 -115 1504 178 0 36 chr3 17193076 17193351 -200843807 - AluJo SINE Alu -47 265 1 2052 117 0 32 chr3 17193363 17193672 -200843486 - AluSx SINE Alu -13 299 1 281 160 264 66 chr3 17193959 17194065 -200843093 - MER5A DNA MER1_type -2 187 61 32 31 0 46 chr3 17194065 17194092 -200843066 + AT_rich Low_complexity Low_complexity 1 28 -34 322 44 0 0 chr3 17194092 17194137 -200843021 - L1PA3 LINE L1 0 6155 6111 32 31 0 46 chr3 17194137 17194174 -200842984 + AT_rich Low_complexity Low_complexity 28 62 0 318 256 0 0 chr3 17194174 17194252 -200842906 - MER5A DNA MER1_type -111 78 1 279 227 18 118 chr3 17194372 17194482 -200842676 - MER103 DNA DNA -65 101 3 1009 229 13 34 chr3 17194564 17194800 -200842358 + MIR SINE MIR 20 250 -12 224 291 0 0 chr3 17197585 17197640 -200839518 + (CA)n Simple_repeat Simple_repeat 1 55 0 227 214 18 18 chr3 17199174 17199230 -200837928 + L2 LINE L2 3258 3313 0 952 229 80 82 chr3 17199733 17200122 -200837036 + Charlie4a DNA MER1_type 120 507 -1 2377 147 17 17 chr3 17200396 17200803 -200836355 + L1MB3 LINE L1 5774 6180 -3 390 121 0 0 chr3 17201474 17201540 -200835618 + (TG)n Simple_repeat Simple_repeat 1 66 0 327 266 57 16 chr3 17202208 17202332 -200834826 - MIR3 SINE MIR -77 131 3 398 226 66 44 chr3 17203722 17203859 -200833299 + MIR3 SINE MIR 19 158 -50 232 129 0 113 chr3 17204105 17204167 -200832991 - L2 LINE L2 -93 3179 3125 194 316 218 10 chr3 17204399 17204592 -200832566 - MIR SINE MIR -10 252 20 358 232 36 72 chr3 17205370 17205508 -200831650 - MIR SINE MIR -80 182 50 275 266 124 0 chr3 17206000 17206113 -200831045 + MIR3 SINE MIR 45 171 -37 1167 278 124 2 chr3 17206243 17206661 -200830497 + L1MC4 LINE L1 7574 8042 0 383 295 66 12 chr3 17206706 17206872 -200830286 + Charlie8 DNA MER1_type 32 206 -2211 194 281 207 2 chr3 17207100 17207219 -200829939 - MIR SINE MIR -61 147 9 330 290 0 69 chr3 17207257 17207388 -200829770 - MIR SINE MIR -57 205 84 212 344 52 0 chr3 17207861 17207957 -200829201 - MIR SINE MIR -147 115 15 274 236 251 5 chr3 17207972 17208168 -200828990 - MIR3 SINE MIR -6 256 7 233 329 52 45 chr3 17208773 17208928 -200828230 - L3 LINE CR1 -58 1519 1364 253 325 196 0 chr3 17209192 17209355 -200827803 - L3 LINE CR1 -952 625 431 587 267 198 42 chr3 17210335 17210668 -200826490 + L2 LINE L2 2926 3310 -3 545 324 89 29 chr3 17210689 17211004 -200826154 + L2 LINE L2 2854 3187 -85 364 256 284 4 chr3 17211188 17211455 -200825703 + L2 LINE L2 2682 3023 -290 288 324 37 0 chr3 17211534 17211642 -200825516 + L2 LINE L2 3200 3311 -2 376 248 46 18 chr3 17211700 17211809 -200825349 + L2 LINE L2 3189 3300 -13 799 192 99 16 chr3 17212724 17212906 -200824252 + MER117 DNA MER1_type 1 197 0 548 267 161 14 chr3 17213475 17213692 -200823466 - MIR SINE MIR -1 261 13 311 286 111 8 chr3 17213711 17213837 -200823321 + MIR SINE MIR 77 215 -47 320 268 118 1 chr3 17214058 17214182 -200822976 + MIR SINE MIR 29 163 -62 190 272 40 96 chr3 17214796 17214921 -200822237 - MIR3 SINE MIR -89 119 2 501 276 79 39 chr3 17215390 17215593 -200821565 + MIR SINE MIR 52 262 0 365 270 108 0 chr3 17216041 17216152 -200821006 + MIR SINE MIR 27 149 -113 341 276 45 30 chr3 17216913 17217047 -200820111 + MIR3 SINE MIR 27 162 -46 250 249 58 45 chr3 17217113 17217217 -200819941 - MIR SINE MIR -96 112 7 1773 194 71 0 chr3 17217399 17217723 -200819435 + MER7A DNA MER2_type 2 346 0 243 284 147 43 chr3 17217724 17217946 -200819212 - MIR SINE MIR -13 249 13 206 214 0 14 chr3 17218398 17218468 -200818690 + CT-rich Low_complexity Low_complexity 2 70 0 372 247 43 0 chr3 17218837 17218930 -200818228 - MIR SINE MIR -49 213 117 207 0 0 0 chr3 17219348 17219371 -200817787 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 361 257 9 28 chr3 17219613 17219722 -200817436 + MIR SINE MIR 37 143 -65 545 240 105 1 chr3 17219905 17220070 -200817088 + MIR SINE MIR 16 197 -65 220 121 0 86 chr3 17220356 17220414 -200816744 + (TTTTTA)n Simple_repeat Simple_repeat 2 54 0 220 331 55 24 chr3 17220965 17221092 -200816066 + MER5A DNA MER1_type 33 163 -26 336 207 140 140 chr3 17221099 17221169 -200815989 + MIR SINE MIR 74 143 -119 860 118 0 0 chr3 17221169 17221288 -200815870 - L1PB1 LINE L1 -1 6150 6032 336 207 140 140 chr3 17221288 17221396 -200815762 + MIR SINE MIR 142 252 -10 1188 244 94 39 chr3 17222015 17222453 -200814705 + MLT1C LTR MaLR 6 467 0 379 223 248 6 chr3 17222512 17222669 -200814489 + MIR SINE MIR 9 203 -59 332 309 10 0 chr3 17222661 17222758 -200814400 - L2 LINE L2 0 3313 3216 * 267 331 50 8 chr3 17224111 17224232 -200812926 - L2 LINE L2 0 3272 3147 272 289 13 0 chr3 17224973 17225049 -200812109 + MIR3 SINE MIR 85 161 -47 744 236 63 80 chr3 17225406 17225643 -200811515 - MER102b DNA MER1_type 0 341 109 443 327 138 18 chr3 17226095 17226312 -200810846 + MIR SINE MIR 20 262 0 335 291 39 0 chr3 17226441 17226544 -200810614 + MIR3 SINE MIR 85 191 -17 454 234 135 21 chr3 17226904 17227045 -200810113 + MIR3 SINE MIR 14 170 -38 205 306 45 54 chr3 17227311 17227422 -200809736 + L2 LINE L2 2893 3002 -270 305 309 41 8 chr3 17227424 17227547 -200809611 + Charlie8 DNA MER1_type 9 135 -2282 194 267 22 56 chr3 17227679 17227769 -200809389 + L3 LINE CR1 1298 1384 -193 183 80 0 0 chr3 17227769 17227794 -200809364 + (T)n Simple_repeat Simple_repeat 1 25 0 1648 150 32 35 chr3 17227887 17228395 -200808763 - SVA Other Other -518 868 462 349 284 0 0 chr3 17228650 17228738 -200808420 - L2 LINE L2 0 3313 3226 354 233 29 29 chr3 17230023 17230126 -200807032 + MIR SINE MIR 47 149 -113 328 291 120 75 chr3 17231266 17231377 -200805781 + MIR SINE MIR 19 124 -138 2260 90 0 0 chr3 17231377 17231676 -200805482 - AluSq SINE Alu -14 299 1 328 291 120 75 chr3 17231676 17231798 -200805360 + MIR SINE MIR 124 262 0 718 243 24 0 chr3 17231828 17231997 -200805161 - MER5B DNA MER1_type 0 178 6 648 219 69 0 chr3 17232000 17232160 -200804998 + MER5A DNA MER1_type 17 187 -2 318 209 203 57 chr3 17234105 17234263 -200802895 + MER53 DNA DNA 9 189 0 276 272 128 24 chr3 17234312 17234437 -200802721 - MIR3 SINE MIR -54 154 17 292 330 80 8 chr3 17234751 17234940 -200802218 + MIR3 SINE MIR 37 243 -19 430 315 90 22 chr3 17235181 17235359 -200801799 - MIR SINE MIR -72 190 1 531 287 29 103 chr3 17235657 17235951 -200801207 + L1MC4a LINE L1 5746 6017 -104 2008 116 25 0 chr3 17236023 17236146 -200801012 + AluSx SINE Alu 1 119 -193 219 69 0 0 chr3 17236146 17236175 -200800983 + (TA)n Simple_repeat Simple_repeat 1 29 0 2008 116 25 0 chr3 17236175 17236336 -200800822 + AluSx SINE Alu 119 292 -20 402 283 206 17 chr3 17236448 17236628 -200800530 + MIR SINE MIR 32 245 -17 984 261 96 26 chr3 17236732 17237150 -200800008 + L2 LINE L2 2531 2977 -337 22 35 0 0 chr3 17237252 17237281 -200799877 + AT_rich Low_complexity Low_complexity 1 29 0 277 285 0 26 chr3 17238057 17238181 -200798977 - MIR SINE MIR -72 136 19 214 296 99 0 chr3 17238225 17238306 -200798852 + L2 LINE L2 2306 2394 -920 548 216 41 72 chr3 17239108 17239302 -200797856 + MIR SINE MIR 48 235 -27 216 352 37 28 chr3 17239882 17239990 -200797168 + MIR SINE MIR 93 201 -61 6452 184 74 89 chr3 17240298 17242513 -200794645 + Tigger1 DNA MER2_type 29 2210 -208 407 107 67 27 chr3 17242519 17242594 -200794564 + Tigger1 DNA MER2_type 2340 2417 -1 575 177 0 65 chr3 17242638 17242762 -200794396 + L2 LINE L2 3196 3311 -2 398 239 137 8 chr3 17243123 17243240 -200793918 + MIR SINE MIR 20 151 -111 424 248 71 18 chr3 17244479 17244592 -200792566 + MIR SINE MIR 30 148 -60 514 300 161 15 chr3 17244789 17245049 -200792109 + L2 LINE L2 3015 3312 -1 442 241 73 22 chr3 17245363 17245500 -200791658 - L2 LINE L2 -486 2828 2685 542 260 65 0 chr3 17245539 17245693 -200791465 - MIR SINE MIR -58 204 41 433 243 143 7 chr3 17246056 17246196 -200790962 + MIR SINE MIR 13 171 -91 1862 199 67 0 chr3 17247120 17247523 -200789635 - MER63B DNA MER1_type 0 436 7 399 291 32 51 chr3 17248118 17248276 -200788882 + MIR SINE MIR 3 144 -64 408 289 107 9 chr3 17248327 17248525 -200788633 - MIR SINE MIR -36 226 2 186 338 0 0 chr3 17248625 17248692 -200788466 - MIR SINE MIR -62 146 92 1146 143 12 76 chr3 17248700 17249031 -200788127 + MLT1B LTR MaLR 1 370 -20 365 295 59 7 chr3 17249108 17249246 -200787912 + MIR3 SINE MIR 65 208 0 243 191 0 0 chr3 17249872 17249919 -200787239 - MIR SINE MIR -63 145 99 325 281 11 35 chr3 17250250 17250385 -200786773 - MIR3 SINE MIR -14 194 60 677 120 0 0 chr3 17250748 17250840 -200786318 + AluJb SINE Alu 2 93 -219 * 722 144 10 0 chr3 17250835 17250939 -200786219 - AluSg/x SINE Alu -78 234 130 1402 117 19 0 chr3 17250939 17251145 -200786013 + AluJb SINE Alu 103 312 0 218 349 113 20 chr3 17251524 17251719 -200785439 + L2 LINE L2 2870 3082 -190 569 294 124 5 chr3 17251789 17252007 -200785151 + MIR SINE MIR 16 259 -3 2018 113 51 0 chr3 17252262 17252554 -200784604 - AluSx SINE Alu -4 308 2 197 213 21 0 chr3 17252728 17252775 -200784383 + L2 LINE L2 3266 3313 0 217 257 168 23 chr3 17252836 17252964 -200784194 - MIR SINE MIR -68 140 36 783 225 75 15 chr3 17253812 17254012 -200783146 - MIR SINE MIR 0 262 51 1428 244 68 35 chr3 17254325 17254784 -200782374 + MLT1K LTR MaLR 85 558 -30 377 295 0 0 chr3 17254880 17254988 -200782170 - MIR SINE MIR -63 145 52 217 322 161 0 chr3 17255911 17255998 -200781160 - L2 LINE L2 -1 3271 3171 472 292 29 23 chr3 17256216 17256387 -200780771 - MIR SINE MIR -66 196 25 824 237 106 0 chr3 17257436 17257643 -200779515 - MIR SINE MIR -32 230 2 205 254 0 15 chr3 17257800 17257867 -200779291 - MIR SINE MIR -133 129 64 220 214 0 0 chr3 17257872 17257914 -200779244 - MIR SINE MIR -102 160 119 188 331 61 39 chr3 17258023 17258204 -200778954 + L2 LINE L2 3004 3188 -84 183 303 49 57 chr3 17262117 17262239 -200774919 - MIR SINE MIR -64 144 24 346 305 133 8 chr3 17262316 17262444 -200774714 + MIR SINE MIR 17 160 -102 217 147 0 0 chr3 17262906 17262940 -200774218 - L2 LINE L2 -19 3294 3261 190 345 0 0 chr3 17262988 17263046 -200774112 + L2 LINE L2 3256 3313 0 490 307 61 12 chr3 17263084 17263247 -200773911 - MIR SINE MIR -87 175 5 241 326 15 45 chr3 17263970 17264102 -200773056 + MIR SINE MIR 84 211 -51 * 268 200 55 0 chr3 17264061 17264116 -200773042 - MIR SINE MIR -4 258 201 565 276 86 23 chr3 17264156 17264377 -200772781 + MIR SINE MIR 28 262 0 637 257 63 0 chr3 17264378 17264553 -200772605 - MIR SINE MIR -75 187 2 183 262 0 82 chr3 17264566 17264627 -200772531 + MIR SINE MIR 157 212 -50 713 205 5 0 chr3 17264851 17265076 -200772082 + (TCCA)n Simple_repeat Simple_repeat 1 226 0 185 330 144 8 chr3 17265076 17265194 -200771964 - L2 LINE L2 0 3272 3139 375 323 110 48 chr3 17265810 17266101 -200771057 + L2 LINE L2 2953 3261 -11 210 227 212 0 chr3 17266124 17266190 -200770968 + MIR SINE MIR 84 163 -99 310 234 133 9 chr3 17266423 17266532 -200770626 + MIR SINE MIR 73 192 -62 511 232 19 3 chr3 17266805 17266937 -200770221 + MIR3 SINE MIR 59 194 -14 523 276 111 0 chr3 17267412 17267593 -200769565 + MIR SINE MIR 56 256 -6 359 256 8 0 chr3 17269066 17269199 -200767959 + (TCCA)n Simple_repeat Simple_repeat 1 134 0 260 327 40 0 chr3 17269741 17269842 -200767316 - MIR SINE MIR -93 169 65 211 279 23 78 chr3 17269893 17270022 -200767136 + MIR3 SINE MIR 87 208 0 350 301 133 36 chr3 17270734 17270930 -200766228 - MIR SINE MIR -7 255 41 268 269 32 54 chr3 17272557 17272570 -200764588 + MER5A DNA MER1_type 1 11 -178 267 283 80 18 chr3 17272570 17272683 -200764475 - MER5A DNA MER1_type -1 188 69 716 258 72 27 chr3 17273505 17273726 -200763432 - MIR SINE MIR -1 261 31 192 409 42 7 chr3 17273967 17274288 -200762870 + L2 LINE L2 2889 3223 -90 662 319 75 0 chr3 17274431 17274672 -200762486 - MIR SINE MIR -3 259 1 451 269 8 30 chr3 17275671 17275805 -200761353 + MIR SINE MIR 97 227 -35 233 312 21 0 chr3 17275839 17275932 -200761226 - MIR SINE MIR -68 140 46 410 281 117 82 chr3 17277029 17277310 -200759848 - L3 LINE CR1 -12 1565 1275 336 320 0 10 chr3 17278024 17278127 -200759031 + MIR3 SINE MIR 104 205 -3 205 311 104 49 chr3 17278315 17278479 -200758679 + L2 LINE L2 2932 3104 -168 305 339 35 0 chr3 17278940 17279055 -200758103 - MIR SINE MIR -136 126 8 266 297 54 45 chr3 17279598 17279709 -200757449 - MIR SINE MIR -70 192 81 236 306 12 0 chr3 17279714 17279799 -200757359 + MER96 DNA MER1_type? 5 90 -85 183 281 188 31 chr3 17280058 17280154 -200757004 - L2 LINE L2 -1 3271 3161 765 242 84 5 chr3 17280219 17280418 -200756740 - MIR SINE MIR -1 261 50 246 320 126 0 chr3 17281046 17281149 -200756009 - MIR3 SINE MIR -18 190 75 797 254 21 5 chr3 17281275 17281464 -200755694 - MIR SINE MIR -70 192 1 396 169 0 0 chr3 17282379 17282456 -200754702 + (TG)n Simple_repeat Simple_repeat 2 78 0 294 286 27 34 chr3 17282475 17282622 -200754536 + GA-rich Low_complexity Low_complexity 5 150 0 666 191 7 41 chr3 17282646 17282793 -200754365 + L1MA7 LINE L1 6148 6289 -2 21 36 0 0 chr3 17282793 17282821 -200754337 + AT_rich Low_complexity Low_complexity 1 28 0 2365 32 0 3 chr3 17282826 17283108 -200754050 + AluY SINE Alu 26 306 -5 322 321 179 15 chr3 17283626 17283822 -200753336 + L2 LINE L2 3020 3247 -25 329 313 193 6 chr3 17283866 17284042 -200753116 - MIR SINE MIR -50 212 4 259 242 0 30 chr3 17284238 17284304 -200752854 - L2 LINE L2 0 3272 3209 2028 134 3 0 chr3 17284352 17284642 -200752516 + AluSx SINE Alu 1 291 -21 1814 300 95 9 chr3 17284718 17285532 -200751626 - L2 LINE L2 -338 2976 2093 211 129 0 0 chr3 17286448 17286479 -200750679 - L2 LINE L2 -19 3294 3264 475 272 49 11 chr3 17286487 17286652 -200750506 + MIR SINE MIR 15 147 -61 235 242 152 20 chr3 17286650 17286749 -200750409 - MIR SINE MIR -89 173 62 * 386 305 6 40 chr3 17288191 17288365 -200748793 - L1M4 LINE L1 -999 5147 4980 4236 182 34 3 chr3 17288375 17289483 -200747675 - L1MB3 LINE L1 0 6183 5043 444 315 105 33 chr3 17289514 17289799 -200747359 + L2 LINE L2 2324 2634 -680 1894 125 86 42 chr3 17289799 17290158 -200747000 + THE1C LTR MaLR 1 375 0 444 315 105 33 chr3 17290158 17290177 -200746981 + L2 LINE L2 2634 2650 -664 397 281 14 14 chr3 17290332 17290471 -200746687 + L2 LINE L2 2918 3056 -216 307 283 20 30 chr3 17290667 17290766 -200746392 + L2 LINE L2 3174 3271 -1 1829 133 18 25 chr3 17290816 17291101 -200746057 + AluJo SINE Alu 1 283 -29 385 242 153 0 chr3 17291234 17291358 -200745800 + MIR SINE MIR 108 250 -12 695 311 56 11 chr3 17291716 17291986 -200745172 + L2 LINE L2 2590 2871 -443 736 207 96 15 chr3 17292088 17292286 -200744872 + MLT1K LTR MaLR 375 588 0 1147 265 70 39 chr3 17292296 17292537 -200744621 + L2 LINE L2 2858 3090 -223 2159 100 0 0 chr3 17292537 17292852 -200744306 - AluSx SINE Alu 0 319 5 1147 265 70 39 chr3 17292852 17292964 -200744194 + L2 LINE L2 3090 3197 -116 758 167 0 0 chr3 17292964 17293078 -200744080 + MER81 DNA DNA 1 114 0 1147 265 70 39 chr3 17293078 17293164 -200743994 + L2 LINE L2 3197 3313 0 410 318 91 15 chr3 17293169 17293367 -200743791 - MIR SINE MIR -37 225 13 581 237 61 2 chr3 17293935 17294106 -200743052 - MIR SINE MIR -63 145 14 220 262 33 0 chr3 17294240 17294301 -200742857 - MIR SINE MIR -116 146 84 272 290 105 0 chr3 17294994 17295118 -200742040 + MIR3 SINE MIR 37 173 -35 260 283 151 24 chr3 17295816 17295990 -200741168 + MIR SINE MIR 35 229 -33 435 253 188 0 chr3 17296199 17296353 -200740805 - MIR SINE MIR -21 241 59 247 325 39 0 chr3 17297211 17297288 -200739870 + MIR SINE MIR 119 198 -64 495 48 0 0 chr3 17297312 17297374 -200739784 + (TG)n Simple_repeat Simple_repeat 2 63 0 599 330 149 3 chr3 17297401 17297727 -200739431 + L2 LINE L2 2764 3041 -272 240 35 0 0 chr3 17297727 17297756 -200739402 + (ATG)n Simple_repeat Simple_repeat 2 30 0 2107 88 0 28 chr3 17297757 17298041 -200739117 - AluSx SINE Alu -36 276 1 599 330 149 3 chr3 17298041 17298169 -200738989 + L2 LINE L2 3040 3313 0 264 175 0 0 chr3 17298256 17298319 -200738839 + (CA)n Simple_repeat Simple_repeat 1 63 0 356 248 152 0 chr3 17298580 17298685 -200738473 + L2 LINE L2 3193 3313 0 1206 171 0 8 chr3 17298990 17299465 -200737693 + (TCCA)n Simple_repeat Simple_repeat 1 471 0 842 19 0 9 chr3 17299477 17299582 -200737576 + (TTCC)n Simple_repeat Simple_repeat 1 104 0 1294 244 138 18 chr3 17299703 17300417 -200736741 + L2 LINE L2 2506 3312 -1 417 265 118 0 chr3 17301269 17301405 -200735753 + MIR SINE MIR 77 228 -34 1839 149 23 7 chr3 17301415 17301717 -200735441 - AluSx SINE Alu -4 308 2 2164 116 0 0 chr3 17302244 17302545 -200734613 - AluSq SINE Alu -12 301 1 346 352 33 56 chr3 17302677 17302820 -200734338 + L1ME4a LINE L1 5852 5988 -133 803 208 28 17 chr3 17302820 17302998 -200734160 - MER104 DNA MER2_type 0 180 1 346 352 33 56 chr3 17302998 17303124 -200734034 + L1ME4a LINE L1 5988 6115 -6 282 56 0 0 chr3 17304034 17304070 -200733088 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 804 294 110 19 chr3 17304071 17304688 -200732470 - L2 LINE L2 -13 3300 2624 1018 239 45 4 chr3 17305271 17305518 -200731640 - MIR SINE MIR -2 260 4 233 312 72 0 chr3 17305677 17305770 -200731388 + MIR SINE MIR 64 118 -90 329 313 13 19 chr3 17305845 17305985 -200731173 - MIR SINE MIR -71 137 41 191 256 103 26 chr3 17306321 17306399 -200730759 + MIR3 SINE MIR 82 165 -43 227 231 19 0 chr3 17306407 17306459 -200730699 + MIR SINE MIR 88 140 -68 218 196 0 22 chr3 17306793 17306839 -200730319 - MIR SINE MIR -117 145 101 638 236 138 38 chr3 17307267 17307614 -200729544 + LTR16A1 LTR ERVL 4 385 -72 336 307 92 7 chr3 17307748 17307901 -200729257 - MIR3 SINE MIR -8 200 35 378 282 30 23 chr3 17308304 17308435 -200728723 + MIR3 SINE MIR 14 145 -63 841 255 49 8 chr3 17308518 17308761 -200728397 - MIR SINE MIR -9 253 1 196 380 35 28 chr3 17308775 17308917 -200728241 - MIR SINE MIR -12 250 108 489 277 113 13 chr3 17309178 17309337 -200727821 - MIR SINE MIR -83 179 5 365 323 38 1 chr3 17310006 17310143 -200727015 - MIR SINE MIR -59 149 36 210 264 45 91 chr3 17310173 17310283 -200726875 - MIR SINE MIR -35 227 123 * 238 344 115 13 chr3 17310280 17310437 -200726721 - MIR SINE MIR -10 252 80 411 167 8 125 chr3 17310896 17310948 -200726210 + MIR SINE MIR 47 79 -183 2172 113 3 10 chr3 17310948 17311257 -200725901 - AluSx SINE Alu -5 307 1 411 167 8 125 chr3 17311257 17311324 -200725834 + MIR SINE MIR 79 152 -110 1535 233 51 27 chr3 17311390 17311841 -200725317 + MLT1C LTR MaLR 6 467 0 256 313 85 8 chr3 17311936 17312089 -200725069 - MIR SINE MIR -60 148 20 1424 114 0 0 chr3 17312393 17312586 -200724572 - AluJb SINE Alu -15 297 105 211 326 20 20 chr3 17312760 17312858 -200724300 + MIR3 SINE MIR 99 196 -12 429 262 9 9 chr3 17313352 17313459 -200723699 - MIR SINE MIR -71 137 31 318 284 67 16 chr3 17313508 17313663 -200723495 + MIR3 SINE MIR 32 194 -14 383 274 72 15 chr3 17313874 17314050 -200723108 + MIR SINE MIR 18 214 -48 201 133 0 0 chr3 17316376 17316406 -200720752 + (AAATG)n Simple_repeat Simple_repeat 1 30 0 24 32 0 0 chr3 17316626 17316657 -200720501 + GC_rich Low_complexity Low_complexity 1 31 0 183 100 0 0 chr3 17316748 17316778 -200720380 + (GGGA)n Simple_repeat Simple_repeat 2 31 0 323 323 36 30 chr3 17318768 17318935 -200718223 - MIR SINE MIR -67 195 28 239 299 82 52 chr3 17319077 17319271 -200717887 - L3 LINE CR1 -10 1567 1368 437 261 115 13 chr3 17319289 17319446 -200717712 + L2 LINE L2 2988 3160 -112 294 292 11 22 chr3 17319530 17319619 -200717539 - MIR3 SINE MIR -34 174 87 254 342 59 21 chr3 17320430 17320629 -200716529 - MIR3 SINE MIR -37 171 17 203 281 0 18 chr3 17320824 17320881 -200716277 + MIR SINE MIR 22 77 -185 644 241 48 18 chr3 17321037 17321203 -200715955 + MIR SINE MIR 22 192 -70 600 238 119 16 chr3 17321463 17321648 -200715510 - MIR SINE MIR -6 256 53 542 254 18 37 chr3 17322277 17322494 -200714664 + L2 LINE L2 2847 3059 -213 206 298 0 0 chr3 17323033 17323090 -200714068 - L2 LINE L2 -2 3311 3255 277 252 148 40 chr3 17323232 17323428 -200713730 - MIR SINE MIR -11 251 18 477 0 0 0 chr3 17323697 17323750 -200713408 + (CA)n Simple_repeat Simple_repeat 1 53 0 252 278 11 33 chr3 17323788 17323878 -200713280 - MIR SINE MIR -61 147 60 477 246 15 15 chr3 17324046 17324176 -200712982 + MIR SINE MIR 13 142 -120 793 297 71 51 chr3 17324210 17324715 -200712443 - L2 LINE L2 0 3272 2733 774 263 17 38 chr3 17325224 17325460 -200711698 - MIR SINE MIR -27 235 5 219 199 0 36 chr3 17325774 17325830 -200711328 - MIR3 SINE MIR -49 159 105 614 232 95 38 chr3 17326325 17326536 -200710622 + MIR SINE MIR 21 243 -19 638 287 72 18 chr3 17326877 17327100 -200710058 + MIR SINE MIR 22 256 -6 709 219 137 0 chr3 17327185 17327368 -200709790 - MER63A DNA MER1_type 0 210 3 251 313 16 0 chr3 17328021 17328085 -200709073 + MIR SINE MIR 111 175 -87 207 0 0 0 chr3 17328195 17328218 -200708940 + (TG)n Simple_repeat Simple_repeat 2 24 0 199 268 14 56 chr3 17328626 17328697 -200708461 + MIR3 SINE MIR 115 182 -26 260 310 57 45 chr3 17328817 17329062 -200708096 - MIR SINE MIR -6 256 9 243 247 123 4 chr3 17330083 17330190 -200706968 + MIR SINE MIR 81 147 -61 881 232 100 21 chr3 17330207 17330448 -200706710 - MIR SINE MIR 0 262 3 209 259 121 0 chr3 17330957 17331015 -200706143 - L2 LINE L2 -12 3301 3237 2077 117 52 0 chr3 17331698 17331988 -200705170 - AluSx SINE Alu -7 305 1 192 77 0 0 chr3 17331990 17332016 -200705142 + (T)n Simple_repeat Simple_repeat 1 26 0 188 321 0 0 chr3 17332289 17332345 -200704813 + L3 LINE CR1 422 477 -1100 512 313 77 5 chr3 17333039 17333247 -200703911 - MIR SINE MIR -20 242 20 21 0 0 0 chr3 17333338 17333359 -200703799 + AT_rich Low_complexity Low_complexity 1 21 0 394 269 0 10 chr3 17333545 17333649 -200703509 - MIR SINE MIR -140 122 20 401 228 57 16 chr3 17333934 17334057 -200703101 - MIR SINE MIR -52 210 83 361 347 24 6 chr3 17334069 17334236 -200702922 + MIR SINE MIR 85 254 -8 288 302 52 17 chr3 17334375 17334491 -200702667 - MIR SINE MIR -42 220 101 395 250 9 0 chr3 17335170 17335278 -200701880 + Charlie8 DNA MER1_type 52 160 -2257 836 268 13 34 chr3 17335533 17335768 -200701390 - MIR SINE MIR -31 231 2 589 212 94 18 chr3 17335897 17336067 -200701091 - MIR SINE MIR -60 202 20 290 295 21 0 chr3 17336488 17336583 -200700575 + MIR SINE MIR 46 142 -66 1560 211 0 3 chr3 17336584 17336896 -200700262 - L1MC3 LINE L1 -2 7783 7473 421 219 86 18 chr3 17336928 17337067 -200700091 + L1ME3 LINE L1 6016 6162 0 553 244 16 0 chr3 17337189 17337316 -200699842 + MIR SINE MIR 121 249 -13 352 325 24 7 chr3 17337944 17338081 -200699077 + MIR3 SINE MIR 13 157 -75 183 156 0 0 chr3 17338085 17338117 -200699041 + (TGG)n Simple_repeat Simple_repeat 1 32 0 384 308 31 20 chr3 17338133 17338328 -200698830 - MIR SINE MIR -30 232 36 609 214 77 24 chr3 17338511 17338679 -200698479 - MIR SINE MIR -66 196 20 1634 207 68 22 chr3 17340888 17341332 -200695826 + MLT1C LTR MaLR 4 467 0 284 359 60 18 chr3 17341453 17341620 -200695538 - MIR SINE MIR -9 253 80 702 237 119 23 chr3 17342602 17342821 -200694337 + MIR SINE MIR 19 258 -4 357 252 171 16 chr3 17342908 17343031 -200694127 + MIR SINE MIR 102 243 -19 182 309 149 11 chr3 17343304 17343398 -200693760 + L2 LINE L2 2689 2795 -519 218 160 80 0 chr3 17344139 17344189 -200692969 + MIR SINE MIR 97 150 -112 289 258 0 0 chr3 17344562 17344624 -200692534 - L2 LINE L2 -1 3312 3251 210 232 171 0 chr3 17344647 17344729 -200692429 - MIR SINE MIR -119 143 48 287 289 158 9 chr3 17345703 17345817 -200691341 - MIR SINE MIR -2 260 130 421 255 103 7 chr3 17345897 17346042 -200691116 + MIR SINE MIR 90 248 -14 2131 131 7 7 chr3 17346131 17346436 -200690722 - AluSx SINE Alu -7 305 1 4472 210 84 39 chr3 17346444 17346618 -200690540 - L1MD2 LINE L1 -13 6346 6181 297 0 0 0 chr3 17346618 17346651 -200690507 + (TG)n Simple_repeat Simple_repeat 2 34 0 4472 210 84 39 chr3 17346651 17347753 -200689405 - L1MD2 LINE L1 -178 6181 5130 2140 146 0 3 chr3 17347753 17348061 -200689097 - AluJo SINE Alu -5 307 1 4472 210 84 39 chr3 17348061 17349491 -200687667 - L1MD2 LINE L1 -1229 5130 3531 14148 52 7 0 chr3 17349491 17352114 -200685044 + L1PA5 LINE L1 3520 6158 0 189 274 20 0 chr3 17352118 17352169 -200684989 + MIR SINE MIR 97 148 -114 300 341 71 16 chr3 17352869 17353051 -200684107 - MIR SINE MIR -50 212 21 322 351 127 18 chr3 17353674 17354061 -200683097 + L2 LINE L2 2362 2790 -524 394 285 69 94 chr3 17354118 17354479 -200682679 + L2 LINE L2 2920 3271 -1 250 299 142 30 chr3 17355888 17356022 -200681136 + MIR3 SINE MIR 32 180 -28 445 275 69 0 chr3 17356055 17356186 -200680972 - MIR SINE MIR -77 185 46 499 284 99 6 chr3 17357071 17357233 -200679925 - MIR SINE MIR -72 190 14 744 244 101 52 chr3 17357364 17357712 -200679446 + L2 LINE L2 2911 3275 -38 231 310 180 0 chr3 17357775 17357875 -200679283 - MIR SINE MIR -81 181 64 399 262 71 35 chr3 17358364 17358505 -200678653 - MER5A DNA MER1_type -9 180 35 1254 320 58 66 chr3 17358731 17359274 -200677884 + L3 LINE CR1 709 1244 -333 2266 101 0 10 chr3 17359274 17359582 -200677576 - AluSq SINE Alu -8 305 1 1254 320 58 66 chr3 17359582 17359903 -200677255 + L3 LINE CR1 1244 1566 -11 233 222 283 0 chr3 17360105 17360204 -200676954 + MIR3 SINE MIR 3 129 -79 433 197 13 0 chr3 17360321 17360397 -200676761 - MER81 DNA DNA -37 77 1 293 216 0 102 chr3 17360397 17360485 -200676673 - MER5A DNA MER1_type -102 87 9 389 264 45 51 chr3 17361825 17362003 -200675155 + MIR SINE MIR 41 217 -45 577 217 6 6 chr3 17362245 17362379 -200674779 + GA-rich Low_complexity Low_complexity 2 138 -29 2040 151 0 22 chr3 17362379 17362698 -200674460 + AluJb SINE Alu 1 312 0 577 217 6 6 chr3 17362698 17362729 -200674429 + GA-rich Low_complexity Low_complexity 137 167 0 468 312 85 0 chr3 17363119 17363308 -200673850 + MLT1K LTR MaLR 361 565 -23 955 277 164 14 chr3 17363456 17363976 -200673182 - L1MC4 LINE L1 0 8042 7445 555 254 12 12 chr3 17364140 17364313 -200672845 - L1ME2 LINE L1 -194 5970 5798 552 273 42 106 chr3 17364658 17364988 -200672170 + L2 LINE L2 2924 3232 -40 222 222 0 0 chr3 17365006 17365060 -200672098 + GA-rich Low_complexity Low_complexity 2 55 0 189 0 0 0 chr3 17365386 17365407 -200671751 + (CA)n Simple_repeat Simple_repeat 1 21 0 5125 0 0 0 chr3 17365516 17365728 -200671430 + L1MC1 LINE L1 5449 5632 -701 5125 124 34 6 chr3 17365728 17366574 -200670584 + L1MC1 LINE L1 5449 6318 -15 5125 0 0 0 chr3 17366574 17366683 -200670475 + L1MC1 LINE L1 5632 6318 -15 863 254 40 0 chr3 17366734 17366962 -200670196 - MIR SINE MIR -24 238 2 230 244 130 32 chr3 17366973 17367096 -200670062 + L1ME4a LINE L1 5986 6120 -1 346 252 171 8 chr3 17367499 17367622 -200669536 + MIR SINE MIR 21 163 -99 1254 196 46 0 chr3 17367622 17367882 -200669276 + MLT1E1 LTR MaLR 1 272 -382 1086 185 78 4 chr3 17367933 17368165 -200668993 + MLT1E1 LTR MaLR 405 653 -1 288 203 0 0 chr3 17368512 17368571 -200668587 + L1ME LINE L1 5753 5811 -351 631 168 35 0 chr3 17368838 17368951 -200668207 + L2 LINE L2 3197 3313 0 196 313 38 12 chr3 17369348 17369428 -200667730 + MIR SINE MIR 63 144 -64 2123 177 34 10 chr3 17369691 17370109 -200667049 + MSTA LTR MaLR 1 428 0 186 43 0 0 chr3 17370364 17370387 -200666771 + (CTCA)n Simple_repeat Simple_repeat 4 26 0 285 241 38 13 chr3 17370390 17370469 -200666689 - L2 LINE L2 -9 3263 3183 633 271 65 36 chr3 17370472 17370719 -200666439 - MIR SINE MIR -1 261 8 202 250 0 0 chr3 17370776 17370820 -200666338 + L2 LINE L2 3270 3313 0 352 190 0 13 chr3 17370848 17370927 -200666231 - L2 LINE L2 -210 3062 2985 469 299 89 11 chr3 17371247 17371447 -200665711 + MIR SINE MIR 46 260 -2 28 48 0 0 chr3 17371982 17372024 -200665134 + AT_rich Low_complexity Low_complexity 1 42 0 266 263 220 34 chr3 17372024 17372142 -200665016 - MIR SINE MIR -109 153 14 393 255 0 66 chr3 17372531 17372637 -200664521 - L1MC4 LINE L1 -1330 6712 6614 * 396 246 28 0 chr3 17372564 17372672 -200664486 + L1MC4 LINE L1 1996 6983 -1339 838 101 0 62 chr3 17372672 17372801 -200664357 - FRAM SINE Alu -30 146 26 941 252 111 31 chr3 17372944 17373369 -200663789 + MLT1K LTR MaLR 126 584 -4 244 280 13 13 chr3 17373475 17373550 -200663608 + MARNA DNA Mariner 348 422 -164 289 162 27 95 chr3 17373973 17374047 -200663111 + MIR SINE MIR 124 192 -70 222 37 0 0 chr3 17374377 17374404 -200662754 + (TG)n Simple_repeat Simple_repeat 1 27 0 480 278 107 0 chr3 17374406 17374575 -200662583 + MER91A DNA MER1_type 10 196 0 225 154 0 0 chr3 17374889 17374928 -200662230 + T-rich Low_complexity Low_complexity 1 39 0 2475 72 0 0 chr3 17375234 17375527 -200661631 + AluY SINE Alu 1 293 -18 265 235 62 12 chr3 17375532 17375613 -200661545 - MIR SINE MIR -12 250 166 241 204 0 0 chr3 17375774 17375818 -200661340 - MIR SINE MIR -111 151 108 657 294 36 4 chr3 17376000 17376223 -200660935 + MIR SINE MIR 35 262 0 2071 155 0 0 chr3 17376442 17376745 -200660413 + AluSx SINE Alu 3 305 -7 188 138 0 0 chr3 17376763 17376792 -200660366 + MIR SINE MIR 66 94 -168 315 253 0 53 chr3 17376888 17376983 -200660175 - MIR SINE MIR -55 207 118 255 354 121 0 chr3 17378172 17378271 -200658887 + MIR SINE MIR 89 199 -63 453 62 0 0 chr3 17379284 17379349 -200657809 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 312 240 27 0 chr3 17379370 17379445 -200657713 - MIR SINE MIR -108 154 78 394 233 0 0 chr3 17379780 17379853 -200657305 + L2 LINE L2 3230 3302 -11 337 343 9 0 chr3 17379999 17380107 -200657051 + MIR SINE MIR 57 165 -97 259 234 141 0 chr3 17380804 17380890 -200656268 - MIR SINE MIR -51 157 49 181 284 90 0 chr3 17381571 17381638 -200655520 + L2 LINE L2 3180 3252 -61 420 218 57 24 chr3 17382229 17382353 -200654805 - L2 LINE L2 -12 3301 3174 656 248 0 0 chr3 17382573 17382698 -200654460 + L2 LINE L2 3189 3313 0 2228 196 62 37 chr3 17382842 17383409 -200653749 - L1MD2 LINE L1 -13 6346 5766 310 312 55 30 chr3 17383411 17383613 -200653545 - L1MD2 LINE L1 -509 5612 5406 1454 234 66 80 chr3 17383798 17383933 -200653225 + MLT1H LTR MaLR 45 180 -369 2085 96 43 127 chr3 17383933 17384328 -200652830 - THE1B LTR MaLR 0 364 3 1454 234 66 80 chr3 17384328 17384704 -200652454 + MLT1H LTR MaLR 180 549 0 499 269 39 8 chr3 17385848 17385978 -200651180 - MIR SINE MIR -109 153 20 461 274 97 10 chr3 17386171 17386362 -200650796 + MIR SINE MIR 40 248 -14 189 107 0 0 chr3 17386690 17386718 -200650440 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 245 360 45 9 chr3 17386726 17386837 -200650321 - L2 LINE L2 -20 3252 3138 469 224 48 8 chr3 17386992 17387117 -200650041 + MLT1L LTR MaLR 169 298 -317 327 273 125 0 chr3 17387190 17387318 -200649840 + MLT1L LTR MaLR 420 563 -52 339 262 57 33 chr3 17387669 17387791 -200649367 + MIR SINE MIR 108 232 -30 632 287 20 15 chr3 17388050 17388245 -200648913 + L1ME LINE L1 5614 5809 -312 296 301 26 7 chr3 17388312 17388465 -200648693 + HAL1b LINE L1 1179 1334 -14 2075 189 26 0 chr3 17388489 17388871 -200648287 + MSTD LTR MaLR 5 396 0 269 222 246 48 chr3 17389024 17389191 -200647967 - L3 LINE CR1 -104 1473 1274 1107 260 59 31 chr3 17389546 17389938 -200647220 - MLT1I LTR MaLR -1 408 6 235 271 0 0 chr3 17389962 17390010 -200647148 + polypurine Low_complexity Low_complexity 3 50 0 214 195 0 0 chr3 17390422 17390463 -200646695 - L2 LINE L2 -3 3310 3270 678 264 35 22 chr3 17391178 17391405 -200645753 - MIR SINE MIR -2 260 31 478 266 50 65 chr3 17392464 17392554 -200644604 + MIR SINE MIR 61 151 -111 2700 206 39 0 chr3 17392554 17393089 -200644069 + MER74A LTR ERVL 1 556 -2 478 266 50 65 chr3 17393089 17393197 -200643961 + MIR SINE MIR 151 256 -6 736 209 127 6 chr3 17393279 17393437 -200643721 - MER45A DNA AcHobo -1 177 1 282 305 67 19 chr3 17394248 17394353 -200642805 + L2 LINE L2 2957 3066 -206 337 263 23 4 chr3 17394494 17394630 -200642528 + MIR SINE MIR 57 252 -10 425 285 0 83 chr3 17394636 17394674 -200642484 + L2 LINE L2 3182 3222 -91 510 258 15 8 chr3 17394674 17394806 -200642352 - MER94 DNA DNA -1 133 1 425 285 0 83 chr3 17394806 17394911 -200642247 + L2 LINE L2 3222 3313 0 258 105 0 0 chr3 17395040 17395078 -200642080 + (TGAA)n Simple_repeat Simple_repeat 2 39 0 358 299 174 43 chr3 17395523 17395707 -200641451 - MIR SINE MIR -5 257 50 219 104 83 42 chr3 17395789 17395837 -200641321 + MIR SINE MIR 81 130 -78 7088 67 0 0 chr3 17396163 17397056 -200640102 + L1PA5 LINE L1 5261 6153 -1 4654 234 27 12 chr3 17397056 17398485 -200638673 - L1MDa LINE L1 -2613 3927 2478 3534 175 58 28 chr3 17398479 17399297 -200637861 - L1MDa LINE L1 -4332 2208 1367 * 691 104 0 0 chr3 17399379 17399475 -200637683 + MLT1B LTR MaLR 284 379 -11 1792 166 47 53 chr3 17399489 17399916 -200637242 + Charlie1 DNA MER1_type 2276 2701 -60 2310 117 0 0 chr3 17399916 17400214 -200636944 - AluSx SINE Alu -14 298 1 1792 166 47 53 chr3 17400214 17400275 -200636883 + Charlie1 DNA MER1_type 2701 2761 0 807 291 98 29 chr3 17400283 17400764 -200636394 + MER113 DNA MER1_type? 1 514 -7 620 248 26 63 chr3 17401105 17401375 -200635783 + L1ME3A LINE L1 5692 5951 -219 2277 123 3 0 chr3 17401423 17401733 -200635425 + AluSx SINE Alu 1 311 -1 538 262 40 15 chr3 17401916 17402118 -200635040 + L1ME4a LINE L1 5716 5922 -199 377 252 35 63 chr3 17402901 17403044 -200634114 - MIR SINE MIR -95 167 29 397 201 147 49 chr3 17403358 17403542 -200633616 + MIR3 SINE MIR 5 206 -2 400 240 50 0 chr3 17403765 17403865 -200633293 - MIR SINE MIR -63 145 41 250 309 0 64 chr3 17404369 17404479 -200632679 - MIR SINE MIR -12 250 148 243 100 0 140 chr3 17404591 17404641 -200632517 + LTR16C LTR ERVL 188 230 -261 1026 157 136 79 chr3 17404667 17404947 -200632211 + LTR16C LTR ERVL 193 488 -3 362 308 91 14 chr3 17404948 17405091 -200632067 - MIR SINE MIR -97 165 12 226 338 14 0 chr3 17405155 17405226 -200631932 - L2 LINE L2 0 3313 3242 * 274 290 90 24 chr3 17405221 17405388 -200631770 + MIR SINE MIR 9 190 -18 256 265 121 99 chr3 17405368 17405591 -200631567 + L2 LINE L2 3044 3271 -1 * 241 364 0 0 chr3 17405808 17405885 -200631273 + CT-rich Low_complexity Low_complexity 1 77 0 283 196 0 0 chr3 17406114 17406165 -200630993 - MIR SINE MIR -143 119 69 361 272 161 33 chr3 17408720 17408900 -200628258 - MIR SINE MIR -12 250 48 330 326 108 0 chr3 17409051 17409180 -200627978 - MIR SINE MIR -41 221 79 244 286 41 20 chr3 17409202 17409300 -200627858 + MIR SINE MIR 117 216 -46 326 298 79 0 chr3 17409435 17409549 -200627609 + L2 LINE L2 3141 3263 -9 192 268 89 0 chr3 17409750 17409806 -200627352 - MIR3 SINE MIR -39 169 109 231 264 14 28 chr3 17410375 17410447 -200626711 - MIR SINE MIR -56 152 82 813 205 51 52 chr3 17410466 17410897 -200626261 + MLT1D LTR MaLR 1 505 0 321 267 92 42 chr3 17410904 17411024 -200626134 - MIR3 SINE MIR -6 202 77 181 304 185 0 chr3 17411283 17411375 -200625783 + MIR SINE MIR 117 225 -37 379 258 11 0 chr3 17411561 17411650 -200625508 + L2 LINE L2 2970 3059 -213 2272 108 0 3 chr3 17412079 17412375 -200624783 - AluSx SINE Alu -17 295 1 908 264 101 43 chr3 17412463 17412861 -200624297 - L2 LINE L2 -14 3299 2879 727 245 38 22 chr3 17412990 17413174 -200623984 - MIR SINE MIR -56 206 20 184 309 53 21 chr3 17413910 17414004 -200623154 - MIR SINE MIR -164 98 2 1024 249 31 90 chr3 17414308 17414817 -200622341 + MLT1K LTR MaLR 39 517 -71 197 143 0 41 chr3 17415020 17415069 -200622089 + (GGAGA)n Simple_repeat Simple_repeat 5 51 0 1944 136 82 0 chr3 17415377 17415707 -200621451 + L1MA5 LINE L1 5944 6300 0 296 284 147 0 chr3 17415748 17415857 -200621301 - MIR SINE MIR -63 145 21 545 328 187 28 chr3 17416627 17417452 -200619706 + L2 LINE L2 2320 3270 -2 660 138 49 49 chr3 17417642 17417716 -200619442 - MIR SINE MIR -104 158 82 2369 105 39 30 chr3 17417716 17418077 -200619081 + THE1B LTR MaLR 1 364 0 660 138 49 49 chr3 17418077 17418125 -200619033 - MIR SINE MIR -179 83 36 465 219 47 0 chr3 17418876 17419004 -200618154 + L1ME LINE L1 5657 5790 -331 748 309 28 12 chr3 17419292 17419544 -200617614 - MIR SINE MIR -4 258 3 548 231 27 20 chr3 17419897 17420044 -200617114 - MIR SINE MIR -36 226 79 611 154 114 20 chr3 17420394 17420543 -200616615 + LTR33A LTR ERVL 352 514 -9 799 277 72 72 chr3 17421011 17421476 -200615682 + MLT1J LTR MaLR 9 450 0 319 343 21 29 chr3 17421576 17421716 -200615442 + L2 LINE L2 2503 2641 -673 273 232 29 14 chr3 17421882 17421951 -200615207 + MIR SINE MIR 36 105 -157 491 206 84 0 chr3 17421960 17422067 -200615091 + MIR SINE MIR 7 122 -140 204 289 0 0 chr3 17422087 17422177 -200614981 + (CCCA)n Simple_repeat Simple_repeat 3 92 0 180 152 0 0 chr3 17422296 17422329 -200614829 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 527 204 15 0 chr3 17422574 17422706 -200614452 - MER20B DNA MER1_type -69 714 581 793 309 113 0 chr3 17422858 17423185 -200613973 - MER20B DNA MER1_type -267 516 153 714 319 30 4 chr3 17423633 17423865 -200613293 + MIR SINE MIR 22 259 -3 336 333 87 0 chr3 17425202 17425352 -200611806 - MIR SINE MIR -78 184 22 468 276 32 60 chr3 17425404 17425623 -200611535 - MIR SINE MIR -14 248 36 321 262 10 48 chr3 17426211 17426314 -200610844 + LTR67 LTR ERVL 4 102 -455 236 380 99 0 chr3 17426351 17426493 -200610665 + MIR3 SINE MIR 52 207 -1 668 282 94 4 chr3 17428050 17428284 -200608874 + MLT1H LTR MaLR 3 257 -292 351 248 0 80 chr3 17428490 17428561 -200608597 + MIR SINE MIR 148 206 -56 977 110 0 0 chr3 17428561 17428716 -200608442 + L1MB3 LINE L1 6028 6182 -1 351 248 0 80 chr3 17428716 17428769 -200608389 + MIR SINE MIR 206 262 0 487 305 98 11 chr3 17428937 17429111 -200608047 - MIR3 SINE MIR -10 198 10 272 250 161 24 chr3 17429680 17429804 -200607354 - MER5A DNA MER1_type -1 188 48 560 261 140 64 chr3 17430171 17430642 -200606516 - HAL1 LINE L1 -1399 1108 602 249 160 20 20 chr3 17431489 17431539 -200605619 - MIR SINE MIR -110 152 103 186 268 0 18 chr3 17431579 17431635 -200605523 + MIR SINE MIR 161 215 -47 632 130 0 0 chr3 17431637 17431737 -200605421 + L1MB3 LINE L1 6028 6127 -56 295 344 127 6 chr3 17432161 17432318 -200604840 - MIR SINE MIR -50 212 37 1789 179 7 3 chr3 17432548 17432856 -200604302 - AluJb SINE Alu -3 309 1 2391 71 37 0 chr3 17432959 17433253 -200603905 + AluSg SINE Alu 1 305 -5 407 295 0 0 chr3 17433262 17433357 -200603801 + MER5A DNA MER1_type 15 109 -80 245 354 80 0 chr3 17433509 17433622 -200603536 - MIR3 SINE MIR -46 162 41 262 295 13 94 chr3 17434147 17434296 -200602862 + MIR SINE MIR 14 150 -112 2502 227 42 45 chr3 17434298 17434509 -200602649 + L1ME3 LINE L1 5451 5661 -501 1737 105 0 13 chr3 17434509 17434747 -200602411 + AluY SINE Alu 71 305 -6 2502 227 42 45 chr3 17434747 17435249 -200601909 + L1ME3 LINE L1 5661 6162 0 230 207 16 8 chr3 17435392 17435455 -200601703 + MIR SINE MIR 93 152 -63 1064 88 0 7 chr3 17435567 17435703 -200601455 + AluSq/x SINE Alu 1 135 -177 2144 117 0 3 chr3 17435703 17436025 -200601133 + AluSx SINE Alu 1 321 0 512 264 7 23 chr3 17436463 17436634 -200600524 + L2 LINE L2 3108 3312 -1 666 257 65 19 chr3 17436945 17437159 -200599999 + MER58A DNA MER1_type 1 224 0 674 256 12 19 chr3 17437185 17437345 -200599813 - MIR SINE MIR -55 207 49 619 218 103 0 chr3 17437927 17438083 -200599075 + MIR SINE MIR 86 257 -5 551 244 86 63 chr3 17438616 17438931 -200598227 - L2 LINE L2 -102 3211 2890 252 245 0 0 chr3 17439096 17439145 -200598013 + L2 LINE L2 3214 3262 -10 243 258 163 0 chr3 17439812 17439960 -200597198 - MIR SINE MIR -55 207 32 258 337 10 0 chr3 17440148 17440249 -200596909 - L2 LINE L2 -25 3247 3146 1269 288 114 27 chr3 17440916 17441392 -200595766 + L2 LINE L2 2252 2685 -628 2469 66 10 0 chr3 17441392 17441694 -200595464 + AluY SINE Alu 1 305 -6 1269 288 114 27 chr3 17441694 17442174 -200594984 + L2 LINE L2 2685 3292 -21 561 267 36 0 chr3 17442506 17442671 -200594487 - MIR SINE MIR -33 229 59 234 260 96 62 chr3 17443052 17443198 -200593960 + L2 LINE L2 3009 3159 -154 1492 182 4 44 chr3 17443208 17443483 -200593675 + AluJb SINE Alu 21 284 -28 198 150 0 0 chr3 17443483 17443523 -200593635 + (TA)n Simple_repeat Simple_repeat 1 40 0 395 277 65 19 chr3 17443548 17443559 -200593599 + L2 LINE L2 3152 3161 -152 2080 135 30 0 chr3 17443559 17443856 -200593302 - AluSx SINE Alu -6 306 1 395 277 65 19 chr3 17443856 17443919 -200593239 + L2 LINE L2 3161 3220 -93 291 28 0 0 chr3 17443919 17443955 -200593203 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 395 277 65 19 chr3 17443955 17444034 -200593124 + L2 LINE L2 3220 3313 0 222 349 0 0 chr3 17444259 17444325 -200592833 - L2 LINE L2 0 3313 3248 517 195 207 53 chr3 17444339 17444508 -200592650 - MER20B DNA MER1_type -24 195 1 452 303 26 13 chr3 17444842 17444997 -200592161 - MIR SINE MIR -8 254 98 2209 217 62 59 chr3 17445901 17446615 -200590543 + L1ME1 LINE L1 5449 6164 -2 2105 130 0 10 chr3 17448970 17449262 -200587896 - AluJb SINE Alu -23 289 1 383 287 132 12 chr3 17449416 17449583 -200587575 - MIR SINE MIR -64 198 12 7209 33 0 2 chr3 17449643 17450919 -200586239 + L1PA5 LINE L1 4894 6167 0 340 216 139 9 chr3 17450932 17451090 -200586068 - MIR SINE MIR -13 249 71 493 283 53 13 chr3 17451635 17451787 -200585371 - MIR SINE MIR -63 199 42 739 321 17 0 chr3 17451983 17452280 -200584878 + L2 LINE L2 2767 3067 -246 381 303 92 7 chr3 17452444 17452586 -200584572 + L2 LINE L2 3159 3312 -1 597 217 0 0 chr3 17453169 17453349 -200583809 + (CA)n Simple_repeat Simple_repeat 1 180 0 510 217 0 0 chr3 17453394 17453560 -200583598 + (CA)n Simple_repeat Simple_repeat 1 166 0 542 280 13 19 chr3 17453791 17453948 -200583210 + MIR SINE MIR 13 168 -94 689 225 30 55 chr3 17454412 17454612 -200582546 + MIR SINE MIR 10 204 -58 235 232 158 0 chr3 17457597 17457692 -200579466 + MIR SINE MIR 37 146 -62 511 269 163 29 chr3 17458602 17458951 -200578207 - MER113 DNA MER1_type? -125 396 1 267 319 130 32 chr3 17459272 17459488 -200577670 + MIR SINE MIR 20 256 -6 433 302 133 44 chr3 17460101 17460604 -200576554 + L2 LINE L2 2240 2787 -527 581 284 147 4 chr3 17460760 17460985 -200576173 + Charlie8 DNA MER1_type 9 265 -2152 346 316 26 0 chr3 17461425 17461539 -200575619 - MIR SINE MIR -29 233 117 1357 212 3 35 chr3 17461740 17461829 -200575329 + AluJo SINE Alu 33 123 -189 2375 105 0 0 chr3 17461829 17462124 -200575034 - AluSx SINE Alu -17 295 1 1357 212 3 35 chr3 17462124 17462322 -200574836 + AluJo SINE Alu 123 311 -1 423 245 46 58 chr3 17462352 17462528 -200574630 + MIR SINE MIR 42 214 -48 267 237 158 0 chr3 17462970 17463046 -200574112 + L2 LINE L2 3179 3266 -6 297 0 0 0 chr3 17463056 17463089 -200574069 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 741 93 0 0 chr3 17463088 17463195 -200573963 + (GA)n Simple_repeat Simple_repeat 2 108 0 185 178 22 0 chr3 17463341 17463386 -200573772 + MIR SINE MIR 70 115 -147 1090 141 0 12 chr3 17464454 17464617 -200572541 + FRAM SINE Alu 2 162 -14 301 398 47 21 chr3 17464826 17465105 -200572053 + L2 LINE L2 2985 3270 -2 375 280 47 23 chr3 17466183 17466332 -200570826 - L1MC4 LINE L1 -1306 7016 1995 471 311 89 26 chr3 17467929 17468119 -200569039 + MIR SINE MIR 59 260 -2 1303 288 104 18 chr3 17468398 17468996 -200568162 + L2 LINE L2 1792 2440 -874 1577 272 71 53 chr3 17469022 17469724 -200567434 + MER21B LTR ERV1 25 739 -124 1021 262 192 8 chr3 17469737 17470447 -200566711 + L2 LINE L2 2458 3313 0 449 271 15 41 chr3 17470718 17470899 -200566259 + MIR SINE MIR 19 192 -62 456 299 85 24 chr3 17471220 17471514 -200565644 - L2 LINE L2 -419 2895 2584 196 208 42 0 chr3 17471568 17471616 -200565542 - L2 LINE L2 -831 2483 2434 1962 168 54 0 chr3 17472315 17472685 -200564473 + MLT1B LTR MaLR 1 390 0 719 289 61 48 chr3 17472916 17473438 -200563720 - L1ME4a LINE L1 -3 6118 5590 378 262 14 64 chr3 17473707 17473848 -200563310 - MIR SINE MIR -118 144 11 624 276 113 0 chr3 17474323 17474544 -200562614 + MIR SINE MIR 11 256 -6 1101 259 71 25 chr3 17476639 17477087 -200560071 - LTR33 LTR ERVL -52 469 1 259 250 48 29 chr3 17477631 17477735 -200559423 - MIR3 SINE MIR -41 167 62 433 217 22 0 chr3 17477907 17477999 -200559159 - MIR SINE MIR -58 150 100 574 304 31 5 chr3 17479037 17479228 -200557930 + MIR SINE MIR 43 238 -24 1875 148 34 17 chr3 17479230 17479528 -200557630 - AluJo SINE Alu -4 308 6 405 304 17 0 chr3 17480055 17480170 -200556988 + MIR3 SINE MIR 42 158 -50 437 214 62 9 chr3 17480236 17480348 -200556810 - MER103 DNA DNA -46 120 3 196 276 0 0 chr3 17480398 17480456 -200556702 + MIR3 SINE MIR 151 208 0 347 67 0 33 chr3 17480861 17480921 -200556237 + (TGAA)n Simple_repeat Simple_repeat 2 59 0 983 217 70 60 chr3 17481960 17482329 -200554829 - MER113 DNA MER1_type? -147 374 2 290 273 40 0 chr3 17482329 17482428 -200554730 - MIR3 SINE MIR -47 161 59 594 234 0 0 chr3 17482663 17482881 -200554277 + (TGGA)n Simple_repeat Simple_repeat 1 218 0 468 0 0 0 chr3 17483041 17483093 -200554065 + (CA)n Simple_repeat Simple_repeat 2 53 0 315 350 56 12 chr3 17483122 17483282 -200553876 + MIR3 SINE MIR 16 182 -26 385 298 63 13 chr3 17483653 17483811 -200553347 + MIR SINE MIR 37 202 -60 641 315 106 17 chr3 17483874 17484547 -200552611 - L2 LINE L2 0 3313 2572 2615 216 17 25 chr3 17484933 17485521 -200551637 + MER82 DNA MER2_type 1 583 -70 290 253 94 6 chr3 17485710 17485868 -200551290 - MIR SINE MIR -70 192 14 3152 71 11 13 chr3 17486338 17486786 -200550372 - L1PA13 LINE L1 0 6163 5717 258 200 83 0 chr3 17486794 17486854 -200550304 + MIR SINE MIR 79 143 -119 242 257 71 82 chr3 17486912 17487096 -200550062 - MIR SINE MIR -50 212 32 642 262 112 5 chr3 17487194 17487408 -200549750 + MIR SINE MIR 13 249 -13 557 241 83 7 chr3 17487548 17487693 -200549465 - MIR SINE MIR -92 170 15 208 322 111 0 chr3 17488174 17488264 -200548894 + MIR SINE MIR 25 124 -84 453 267 154 39 chr3 17488281 17488566 -200548592 + MER102b DNA MER1_type 22 339 -2 180 237 0 0 chr3 17488686 17488724 -200548434 + L2 LINE L2 3267 3304 -9 704 267 26 10 chr3 17489245 17489440 -200547718 + MIR SINE MIR 15 212 -50 331 215 0 0 chr3 17490235 17490300 -200546858 + MLT1L LTR MaLR 327 391 -224 399 267 48 0 chr3 17491336 17491441 -200545717 - Charlie8 DNA MER1_type -2235 182 73 8032 232 65 13 chr3 17492696 17495230 -200541928 + L1MEc LINE L1 35 2657 -3558 625 226 0 30 chr3 17495228 17495392 -200541766 + L1M4 LINE L1 5046 5204 -942 * 1864 179 38 3 chr3 17495471 17495817 -200541341 - MLT1A1 LTR MaLR -7 358 1 749 266 20 23 chr3 17495824 17496130 -200541028 - LTR33 LTR ERVL -125 396 29 310 298 0 39 chr3 17496152 17496256 -200540902 - MER81 DNA DNA -14 100 1 240 289 13 13 chr3 17496286 17496362 -200540796 - MIR SINE MIR -101 161 86 382 335 109 22 chr3 17496951 17497181 -200539977 + L3 LINE CR1 442 691 -886 197 336 10 29 chr3 17497361 17497465 -200539693 + L3 LINE CR1 915 1016 -561 581 306 73 37 chr3 17497468 17497795 -200539363 - MER102b DNA MER1_type -2 339 1 251 296 0 0 chr3 17497999 17498053 -200539105 + (CCCA)n Simple_repeat Simple_repeat 4 57 0 696 164 11 38 chr3 17498053 17498236 -200538922 + (TCCA)n Simple_repeat Simple_repeat 2 179 0 898 244 68 0 chr3 17498264 17498485 -200538673 + MIR SINE MIR 5 240 -22 422 318 54 14 chr3 17498518 17498666 -200538492 - L2 LINE L2 -5 3267 3114 2680 245 81 39 chr3 17499068 17499241 -200537917 + L1MC4 LINE L1 6757 6921 -1121 231 36 0 0 chr3 17499241 17499269 -200537889 + (CAA)n Simple_repeat Simple_repeat 3 30 0 2680 245 81 39 chr3 17499269 17500053 -200537105 + L1MC4 LINE L1 6921 7755 -287 4683 167 38 3 chr3 17500059 17501088 -200536070 + L1MB5 LINE L1 5100 6165 -9 507 219 47 128 chr3 17501097 17501417 -200535741 + L1MC4 LINE L1 7749 8042 0 709 291 52 3 chr3 17501470 17501776 -200535382 + L1MC4 LINE L1 7689 8009 -33 320 278 176 62 chr3 17503732 17503908 -200533250 + MIR SINE MIR 66 261 -1 295 295 168 20 chr3 17503912 17504061 -200533097 - MIR SINE MIR -17 245 75 263 239 261 0 chr3 17504621 17504713 -200532445 - MER5A DNA MER1_type -35 154 39 212 197 0 33 chr3 17505569 17505630 -200531528 + CT-rich Low_complexity Low_complexity 2 60 0 27 62 0 0 chr3 17505784 17505832 -200531326 + AT_rich Low_complexity Low_complexity 1 48 0 241 267 16 0 chr3 17506171 17506241 -200530917 + MIR SINE MIR 84 146 -62 186 200 0 0 chr3 17506548 17506583 -200530575 - MIR SINE MIR -114 148 114 312 247 26 0 chr3 17507872 17507949 -200529209 - MIR SINE MIR -79 183 105 243 0 0 0 chr3 17508039 17508066 -200529092 + (T)n Simple_repeat Simple_repeat 1 27 0 219 200 150 0 chr3 17508270 17508350 -200528808 + MIR3 SINE MIR 110 201 -7 327 254 96 41 chr3 17508951 17509117 -200528041 + MIR SINE MIR 14 183 -61 242 203 40 54 chr3 17510093 17510167 -200526991 - MIR SINE MIR -77 131 59 428 289 67 26 chr3 17512227 17512421 -200524737 - MIR3 SINE MIR -2 206 5 676 158 178 7 chr3 17513757 17513909 -200523249 - Tigger1 DNA MER2_type 0 2418 2241 1829 144 7 4 chr3 17513913 17514184 -200522974 - AluJb SINE Alu -23 289 18 526 153 59 0 chr3 17514185 17514270 -200522888 - MER33 DNA MER1_type -208 116 27 268 277 62 54 chr3 17514763 17514893 -200522265 - MER5A DNA MER1_type -22 167 37 408 241 98 0 chr3 17514996 17515129 -200522029 - L1MD3 LINE L1 -86 7909 7764 * 1006 297 82 5 chr3 17515107 17515524 -200521634 - L1MEc LINE L1 -4189 2207 1759 659 192 0 0 chr3 17515524 17515649 -200521509 - AluJb SINE Alu -9 303 179 2369 120 0 0 chr3 17515719 17516028 -200521130 - AluSx SINE Alu -3 309 1 914 150 0 21 chr3 17516048 17516188 -200520970 - AluJo SINE Alu -175 137 1 448 222 78 101 chr3 17516191 17516438 -200520720 - L1MEc LINE L1 -4640 1756 1516 2272 99 31 0 chr3 17516438 17516730 -200520428 - AluSg SINE Alu -9 301 1 448 222 78 101 chr3 17516730 17516788 -200520370 - L1MEc LINE L1 -4880 1516 1458 * 657 263 160 38 chr3 17516771 17516967 -200520191 - L1MEc LINE L1 -5835 561 390 2431 94 0 0 chr3 17516967 17517274 -200519884 - AluSx SINE Alu -5 307 1 657 263 160 38 chr3 17517274 17517495 -200519663 - L1MEc LINE L1 -6006 390 93 198 0 0 0 chr3 17517513 17517535 -200519623 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 7260 30 9 11 chr3 17517536 17518730 -200518428 - L1PA3 LINE L1 0 6155 4963 582 151 126 17 chr3 17518732 17518851 -200518307 - FLAM_C SINE Alu -1 132 1 1805 146 21 7 chr3 17518858 17519138 -200518020 - AluSx SINE Alu -18 294 11 191 135 19 39 chr3 17520130 17520182 -200516976 - MIR SINE MIR -77 131 81 427 303 74 6 chr3 17520708 17520883 -200516275 - MIR SINE MIR -71 191 5 284 261 81 36 chr3 17521031 17521142 -200516016 - MIR3 SINE MIR -47 161 46 2321 114 0 0 chr3 17521172 17521480 -200515678 + AluSx SINE Alu 1 308 -4 527 0 16 0 chr3 17522324 17522387 -200514771 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 2193 82 24 10 chr3 17522387 17522678 -200514480 - AluSx SINE Alu -17 295 1 412 254 49 8 chr3 17523372 17523494 -200513664 - MIR SINE MIR -86 176 50 490 114 18 35 chr3 17524052 17524166 -200512992 + (TCTCCC)n Simple_repeat Simple_repeat 3 114 0 477 221 27 0 chr3 17524285 17524434 -200512724 + CT-rich Low_complexity Low_complexity 3 155 0 301 241 19 37 chr3 17524650 17524758 -200512400 + MIR SINE MIR 32 137 -71 353 270 51 51 chr3 17525169 17525306 -200511852 - L2 LINE L2 0 3272 3136 445 298 175 38 chr3 17525663 17526005 -200511153 + L2 LINE L2 2884 3272 0 207 261 43 65 chr3 17527016 17527108 -200510050 + MIR SINE MIR 103 192 -70 455 276 31 31 chr3 17527115 17527168 -200509990 - MIR SINE MIR 0 262 210 2366 82 3 0 chr3 17527168 17527461 -200509697 - AluSp SINE Alu -4 309 16 455 276 31 31 chr3 17527461 17527570 -200509588 - MIR SINE MIR -51 211 100 220 316 25 0 chr3 17527570 17527649 -200509509 - MIR SINE MIR -70 138 58 180 0 0 0 chr3 17528704 17528724 -200508434 + (CCCA)n Simple_repeat Simple_repeat 1 20 0 305 219 110 103 chr3 17529059 17529205 -200507953 + MIR SINE MIR 17 163 -99 1732 184 97 35 chr3 17529581 17529916 -200507242 + Charlie4a DNA MER1_type 21 393 -1568 866 186 6 0 chr3 17529916 17530072 -200507086 + FRAM SINE Alu 1 157 -9 1732 184 97 35 chr3 17530072 17530192 -200506966 + Charlie4a DNA MER1_type 393 504 -4 214 280 199 15 chr3 17530717 17530854 -200506304 - MIR SINE MIR -89 173 3 222 259 86 0 chr3 17531189 17531270 -200505888 + MIR SINE MIR 58 145 -63 3172 185 41 17 chr3 17532518 17533156 -200504002 - MER6 DNA MER2_type -183 682 30 2704 154 50 21 chr3 17533164 17533632 -200503526 - L1MB7 LINE L1 -259 5925 5439 2319 115 0 10 chr3 17533632 17533944 -200503214 - AluSx SINE Alu -3 309 1 2704 154 50 21 chr3 17533944 17534000 -200503158 - L1MB7 LINE L1 -745 5439 5386 615 335 51 53 chr3 17534704 17534916 -200502242 + HAL1b LINE L1 66 277 -1071 2352 99 7 0 chr3 17534916 17535220 -200501938 + AluSx SINE Alu 1 306 -6 794 122 30 15 chr3 17535224 17535355 -200501803 + FLAM_C SINE Alu 1 133 0 615 335 51 53 chr3 17535355 17535567 -200501591 + HAL1b LINE L1 280 494 -854 1223 206 104 63 chr3 17535568 17536089 -200501069 + L1ME1 LINE L1 5638 6333 -1 284 304 72 0 chr3 17536086 17536224 -200500934 + HAL1b LINE L1 517 664 -684 * 839 109 0 0 chr3 17536285 17536395 -200500763 + AluSx SINE Alu 1 110 -202 239 186 102 17 chr3 17536404 17536463 -200500695 + THE1B LTR MaLR 7 70 -358 1359 151 4 44 chr3 17536575 17536827 -200500331 + THE1B LTR MaLR 122 363 -1 1451 105 0 0 chr3 17536827 17537017 -200500141 + AluSx SINE Alu 107 296 -16 846 139 19 57 chr3 17537018 17537176 -200499982 + AluJo/FRAM SINE Alu 144 295 -17 934 238 106 37 chr3 17537197 17537276 -200499882 + L1MC5 LINE L1 6996 7068 -893 2060 130 51 23 chr3 17537276 17537630 -200499528 - THE1B LTR MaLR 0 364 1 934 238 106 37 chr3 17537630 17537954 -200499204 + L1MC5 LINE L1 7068 7427 -534 267 220 9 73 chr3 17538112 17538221 -200498937 + L1ME3A LINE L1 5960 6061 -109 311 267 67 8 chr3 17540362 17540482 -200496676 - MIR SINE MIR -87 175 49 518 233 60 0 chr3 17540681 17540814 -200496344 + L1MB2 LINE L1 6028 6168 -3 1785 170 45 28 chr3 17541119 17541518 -200495640 - L1MB2 LINE L1 -99 6072 5667 222 292 0 13 chr3 17541566 17541639 -200495519 - MIR SINE MIR -112 96 47 1996 82 56 43 chr3 17541965 17542270 -200494888 - AluSx SINE Alu -3 309 1 590 176 146 24 chr3 17542400 17542565 -200494593 - MER5A DNA MER1_type 0 189 5 198 118 0 0 chr3 17545180 17545214 -200491944 + (T)n Simple_repeat Simple_repeat 1 34 0 364 251 171 33 chr3 17545438 17545772 -200491386 - Tigger8 DNA MER2_type -100 566 187 1528 164 0 45 chr3 17545844 17546131 -200491027 - AluSx SINE Alu -1 311 38 28 29 0 0 chr3 17596643 17596678 -200440480 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr3 17596809 17596833 -200440325 + AT_rich Low_complexity Low_complexity 1 24 0 284 226 11 32 chr3 17599555 17599648 -200437510 + T-rich Low_complexity Low_complexity 3 93 0 227 31 31 0 chr3 17599902 17599934 -200437224 + (TTCC)n Simple_repeat Simple_repeat 3 35 0 3769 65 2 0 chr3 17599938 17600412 -200436746 - L1PA7 LINE L1 0 6154 5680 2359 94 0 7 chr3 17600412 17600711 -200436447 - AluSx SINE Alu -15 297 1 29 78 0 0 chr3 17600860 17600924 -200436234 + AT_rich Low_complexity Low_complexity 1 64 0 302 321 28 18 chr3 17601532 17601641 -200435517 - MIR3 SINE MIR -16 192 83 403 311 158 21 chr3 17602280 17602848 -200434310 - L2 LINE L2 -219 3053 2362 327 335 71 16 chr3 17603471 17603653 -200433505 + MIR SINE MIR 21 212 -50 254 198 139 0 chr3 17604605 17604691 -200432467 + MIR SINE MIR 40 137 -71 418 322 82 28 chr3 17604914 17605169 -200431989 + L2 LINE L2 2836 3104 -168 1329 314 50 69 chr3 17606433 17606927 -200430231 + L3 LINE CR1 766 1241 -336 2251 101 0 10 chr3 17606927 17607235 -200429923 - AluSq SINE Alu -8 305 1 1329 314 50 69 chr3 17607235 17607556 -200429602 + L3 LINE CR1 1241 1566 -11 263 222 283 0 chr3 17607758 17607857 -200429301 + MIR3 SINE MIR 3 129 -79 419 197 13 0 chr3 17607974 17608050 -200429108 - MER81 DNA DNA -37 77 1 316 216 0 102 chr3 17608050 17608138 -200429020 - MER5A DNA MER1_type -102 87 9 431 255 71 35 chr3 17609499 17609640 -200427518 + MER5A DNA MER1_type 35 180 -9 246 310 180 0 chr3 17610129 17610229 -200426929 + MIR SINE MIR 64 181 -81 819 236 109 60 chr3 17610292 17610640 -200426518 - L2 LINE L2 -38 3275 2911 534 284 99 6 chr3 17610771 17610933 -200426225 + MIR SINE MIR 14 190 -72 473 275 69 0 chr3 17611818 17611949 -200425209 + MIR SINE MIR 46 185 -77 239 296 141 37 chr3 17611983 17612118 -200425040 - MIR3 SINE MIR -28 180 32 330 222 56 11 chr3 17613527 17613617 -200423541 - L2 LINE L2 -1 3312 3219 181 214 95 143 chr3 17613951 17614077 -200423081 + L2 LINE L2 3133 3252 -20 669 291 52 3 chr3 17615258 17615564 -200421594 - L1MC4 LINE L1 -33 8009 7689 545 209 48 130 chr3 17615617 17615933 -200421225 - L1MC4 LINE L1 0 8042 7753 4657 165 40 5 chr3 17615946 17616975 -200420183 - L1MB5 LINE L1 -9 6165 5100 2567 242 81 39 chr3 17616981 17617765 -200419393 - L1MC4 LINE L1 -287 7755 6921 231 36 0 0 chr3 17617765 17617793 -200419365 + (TTG)n Simple_repeat Simple_repeat 3 30 0 2567 242 81 39 chr3 17617793 17617966 -200419192 - L1MC4 LINE L1 -1121 6921 6757 375 252 171 8 chr3 17618799 17618922 -200418236 + MIR SINE MIR 21 163 -99 1232 196 46 0 chr3 17618922 17619182 -200417976 + MLT1E1 LTR MaLR 1 272 -382 1062 180 79 4 chr3 17619237 17619465 -200417693 + MLT1E1 LTR MaLR 409 653 -1 282 203 0 0 chr3 17619812 17619871 -200417287 + L1ME LINE L1 5753 5811 -351 669 168 35 0 chr3 17620138 17620251 -200416907 + L2 LINE L2 3197 3313 0 210 313 38 12 chr3 17620648 17620728 -200416430 + MIR SINE MIR 63 144 -64 2267 177 34 10 chr3 17620991 17621409 -200415749 + MSTA LTR MaLR 1 428 0 186 43 0 0 chr3 17621664 17621687 -200415471 + (CTCA)n Simple_repeat Simple_repeat 4 26 0 307 241 38 13 chr3 17621690 17621769 -200415389 - L2 LINE L2 -9 3263 3183 686 267 65 36 chr3 17621772 17622019 -200415139 - MIR SINE MIR -1 261 8 358 322 19 53 chr3 17622019 17622227 -200414931 - L2 LINE L2 -87 3185 2985 469 299 89 11 chr3 17622547 17622747 -200414411 + MIR SINE MIR 46 260 -2 28 48 0 0 chr3 17623282 17623324 -200413834 + AT_rich Low_complexity Low_complexity 1 42 0 266 263 220 34 chr3 17623324 17623442 -200413716 - MIR SINE MIR -109 153 14 915 254 40 0 chr3 17623812 17624040 -200413118 + MIR SINE MIR 2 238 -24 5422 124 34 6 chr3 17624200 17625046 -200412112 - L1MC1 LINE L1 -15 6318 5449 431 266 82 58 chr3 17625051 17625258 -200411900 - L1ME4a LINE L1 -296 5825 5614 189 0 0 0 chr3 17625367 17625388 -200411770 + (TG)n Simple_repeat Simple_repeat 1 21 0 222 222 0 0 chr3 17625714 17625768 -200411390 + CT-rich Low_complexity Low_complexity 2 55 0 644 265 39 94 chr3 17625786 17626161 -200410997 - L2 LINE L2 -40 3232 2888 563 254 12 12 chr3 17626461 17626634 -200410524 + L1ME2 LINE L1 5798 5970 -194 910 269 163 15 chr3 17626798 17627319 -200409839 + L1MC4 LINE L1 7445 8042 0 434 312 85 0 chr3 17627467 17627656 -200409502 - MLT1K LTR MaLR -23 565 361 197 272 86 37 chr3 17627812 17627893 -200409265 - MIR SINE MIR -147 115 31 577 217 6 6 chr3 17628046 17628077 -200409081 + CT-rich Low_complexity Low_complexity 2 32 -135 2030 151 0 22 chr3 17628077 17628396 -200408762 - AluJb SINE Alu 0 312 1 577 217 6 6 chr3 17628396 17628530 -200408628 + CT-rich Low_complexity Low_complexity 31 167 0 435 256 38 71 chr3 17628762 17628973 -200408185 - MIR SINE MIR -38 224 21 259 232 158 0 chr3 17630026 17630121 -200407037 - MIR SINE MIR -62 146 37 190 266 202 65 chr3 17631955 17632203 -200404955 - L2 LINE L2 -24 3248 2967 738 225 30 55 chr3 17633108 17633308 -200403850 - MIR SINE MIR -58 204 10 184 338 26 0 chr3 17633629 17633706 -200403452 - MIR SINE MIR -73 189 111 581 280 13 19 chr3 17633772 17633929 -200403229 - MIR SINE MIR -94 168 13 528 214 0 0 chr3 17634160 17634328 -200402830 + (TG)n Simple_repeat Simple_repeat 1 168 0 597 217 0 0 chr3 17634372 17634552 -200402606 + (TG)n Simple_repeat Simple_repeat 1 180 0 620 230 86 86 chr3 17635383 17635687 -200401471 - L1ME3A LINE L1 -8 6162 5859 594 215 98 0 chr3 17635684 17635847 -200401311 - L1ME3A LINE L1 -727 5435 5257 * 1098 262 19 22 chr3 17637320 17637633 -200399525 - MLT1I LTR MaLR 0 409 98 473 144 144 0 chr3 17637899 17638003 -200399155 + MER103 DNA DNA 2 120 -46 624 204 32 81 chr3 17638040 17638226 -200398932 + MER5B DNA MER1_type 1 177 -1 290 309 43 21 chr3 17638606 17638700 -200398458 + L2 LINE L2 3161 3256 -16 219 284 46 55 chr3 17639278 17639387 -200397771 - MER5A DNA MER1_type 0 189 82 1678 219 73 2 chr3 17639475 17639926 -200397232 + LTR16C LTR ERVL 1 483 -8 363 268 16 32 chr3 17640358 17640481 -200396677 + Charlie8 DNA MER1_type 92 212 -2205 283 355 43 48 chr3 17641174 17641405 -200395753 + L3 LINE CR1 760 989 -588 1286 253 80 6 chr3 17641811 17642175 -200394983 + LTR16C LTR ERVL 88 478 -13 1233 283 77 46 chr3 17642265 17643389 -200393769 + L1MC4a LINE L1 4741 5873 -248 755 171 20 0 chr3 17643389 17643541 -200393617 - L1MB7 LINE L1 0 6184 6030 1233 283 77 46 chr3 17643541 17643583 -200393575 + L1MC4a LINE L1 5873 5912 -209 258 116 0 0 chr3 17643590 17643633 -200393525 + (CA)n Simple_repeat Simple_repeat 2 44 0 379 282 113 60 chr3 17643756 17643882 -200393276 - L2 LINE L2 -435 2879 2761 1137 179 20 0 chr3 17643882 17644083 -200393075 + MER3 DNA MER1_type 5 209 0 379 282 113 60 chr3 17644083 17644389 -200392769 - L2 LINE L2 -553 2761 2424 353 267 30 10 chr3 17644748 17644849 -200392309 + L2 LINE L2 3211 3313 0 1035 63 0 14 chr3 17645369 17645511 -200391647 + L1PA5 LINE L1 6015 6154 0 606 192 120 48 chr3 17645683 17645850 -200391308 - MIR SINE MIR -1 261 83 360 303 127 7 chr3 17646096 17646238 -200390920 + MIR SINE MIR 92 250 -12 1720 120 25 104 chr3 17646542 17646868 -200390290 + AluYb8 SINE Alu 1 300 -18 2037 182 14 6 chr3 17647287 17647649 -200389509 - MLT1A1 LTR MaLR 0 365 1 315 224 0 0 chr3 17647664 17647740 -200389418 + (TG)n Simple_repeat Simple_repeat 1 76 0 185 367 50 27 chr3 17647755 17648014 -200389144 - L2 LINE L2 -338 2976 2712 397 284 25 53 chr3 17649129 17649350 -200387808 + MIR SINE MIR 18 232 -30 320 304 90 37 chr3 17649460 17649758 -200387400 + MLT1I LTR MaLR 68 428 -18 331 267 0 13 chr3 17649779 17649854 -200387304 - L2 LINE L2 -15 3298 3225 216 346 25 12 chr3 17650336 17650417 -200386741 - L2 LINE L2 -2 3311 3230 341 323 87 0 chr3 17651276 17651403 -200385755 - MIR SINE MIR -55 153 16 254 320 54 14 chr3 17652110 17652257 -200384901 - MIR3 SINE MIR -17 191 39 222 242 32 16 chr3 17652724 17652848 -200384310 + (CACAC)n Simple_repeat Simple_repeat 3 128 0 238 97 0 0 chr3 17652897 17652928 -200384230 + (A)n Simple_repeat Simple_repeat 1 31 0 377 217 0 0 chr3 17652941 17653001 -200384157 + polypurine Low_complexity Low_complexity 3 62 0 298 256 12 23 chr3 17653196 17653282 -200383876 + MIR3 SINE MIR 92 176 -32 332 253 75 124 chr3 17653438 17653624 -200383534 - MER5A DNA MER1_type -6 183 7 180 250 23 0 chr3 17654018 17654062 -200383096 - L2 LINE L2 -13 3259 3215 207 305 0 0 chr3 17654101 17654183 -200382975 + MIR SINE MIR 130 211 -51 281 224 60 0 chr3 17654328 17654395 -200382763 + L2 LINE L2 2917 2987 -285 1105 163 38 14 chr3 17654517 17654726 -200382432 - MER20 DNA MER1_type 0 219 6 350 392 20 7 chr3 17654747 17654895 -200382263 + L2 LINE L2 3123 3272 0 382 309 0 10 chr3 17654908 17655005 -200382153 - MIR3 SINE MIR -98 110 15 239 317 166 7 chr3 17655095 17655240 -200381918 - MIR SINE MIR -35 227 60 252 333 46 41 chr3 17655465 17655876 -200381282 + L1MEd LINE L1 511 923 -5196 * 384 227 55 0 chr3 17655865 17655975 -200381183 - L1MD3 LINE L1 -1 7994 7879 836 240 0 6 chr3 17656498 17656673 -200380485 + MLT1G1 LTR MaLR 1 174 -421 1134 158 0 30 chr3 17656678 17656881 -200380277 + Tigger2a DNA MER2_type 1 197 -237 1275 98 0 6 chr3 17656884 17657048 -200380110 - AluSg/x SINE Alu -17 295 133 1334 113 86 0 chr3 17657048 17657269 -200379889 + Tigger2a DNA MER2_type 195 434 0 722 231 23 33 chr3 17657273 17657634 -200379524 + MLT1G1 LTR MaLR 140 593 0 801 220 54 11 chr3 17658067 17658253 -200378905 - MIR SINE MIR -40 222 29 1820 191 25 27 chr3 17658490 17658660 -200378498 - MLT1A1 LTR MaLR 0 365 196 2755 90 98 5 chr3 17658660 17659070 -200378088 + LTR7 LTR ERV1 1 448 -2 1820 191 25 27 chr3 17659070 17659265 -200377893 - MLT1A1 LTR MaLR -169 196 1 400 282 0 8 chr3 17659315 17659439 -200377719 + L1ME3A LINE L1 4904 5026 -1120 1613 209 74 19 chr3 17659458 17659879 -200377279 + L1ME3A LINE L1 5718 6161 -9 376 223 96 81 chr3 17659935 17660132 -200377026 + L1MB7 LINE L1 5264 5463 -2345 5602 254 55 43 chr3 17660134 17660229 -200376929 + L1MEc LINE L1 10 102 -6294 291 85 0 0 chr3 17660229 17660276 -200376882 + (CA)n Simple_repeat Simple_repeat 2 48 0 5602 254 55 43 chr3 17660276 17661776 -200375382 + L1MEc LINE L1 102 1646 -4750 3350 184 37 18 chr3 17661776 17662076 -200375082 + L1MB7 LINE L1 5493 5786 -398 2513 162 18 0 chr3 17662076 17662465 -200374693 + MSTD LTR MaLR 1 396 0 3350 184 37 18 chr3 17662465 17662842 -200374316 + L1MB7 LINE L1 5786 6183 -1 5602 254 55 43 chr3 17662842 17663605 -200373553 + L1MEc LINE L1 1646 2398 -3998 3301 36 0 0 chr3 17663988 17664377 -200372781 - L1PA5 LINE L1 -7 6147 5759 349 45 0 0 chr3 17664378 17664422 -200372736 + L1PA5 LINE L1 5703 5746 -408 348 244 168 8 chr3 17664675 17664794 -200372364 - MIR SINE MIR -115 147 10 3233 236 53 52 chr3 17664900 17665213 -200371945 + L1MC4 LINE L1 6859 7170 -872 1842 139 10 33 chr3 17665213 17665514 -200371644 + AluJo SINE Alu 1 294 -18 3233 236 53 52 chr3 17665514 17666222 -200370936 + L1MC4 LINE L1 7170 7881 -161 237 398 82 17 chr3 17666898 17667129 -200370029 - L2 LINE L2 -1 3271 3026 559 288 6 6 chr3 17667390 17667550 -200369608 - MIR SINE MIR 0 262 103 193 304 240 0 chr3 17668074 17668199 -200368959 - MIR SINE MIR -11 251 97 807 271 152 27 chr3 17668214 17668616 -200368542 + L2 LINE L2 2861 3312 -1 537 44 0 0 chr3 17668801 17668869 -200368289 + (CAT)n Simple_repeat Simple_repeat 1 68 0 501 275 14 7 chr3 17668943 17669081 -200368077 - MIR SINE MIR -113 149 11 899 199 58 6 chr3 17669112 17669283 -200367875 - MER5A DNA MER1_type -9 180 1 336 189 0 0 chr3 17669881 17669955 -200367203 + CT-rich Low_complexity Low_complexity 1 74 0 807 284 126 25 chr3 17670382 17670893 -200366265 + L2 LINE L2 2677 3255 -58 219 88 0 0 chr3 17670918 17670952 -200366206 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 180 288 101 36 chr3 17671000 17671139 -200366019 - MIR SINE MIR -75 187 40 341 195 27 60 chr3 17672417 17672489 -200364669 + (TTATA)n Simple_repeat Simple_repeat 2 75 -105 211 71 48 0 chr3 17672489 17672531 -200364627 + (TATAA)n Simple_repeat Simple_repeat 5 48 0 341 195 27 60 chr3 17672531 17672643 -200364515 + (TTATA)n Simple_repeat Simple_repeat 75 180 0 310 138 26 101 chr3 17672560 17672749 -200364409 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 * 192 224 0 0 chr3 17673123 17673190 -200363968 + A-rich Low_complexity Low_complexity 1 67 0 426 280 63 21 chr3 17673321 17673510 -200363648 - MER117 DNA MER1_type 0 197 1 403 242 105 17 chr3 17673560 17673689 -200363469 - MIR SINE MIR -62 146 22 677 306 23 31 chr3 17674733 17674994 -200362164 - MIR SINE MIR -2 260 2 313 345 17 11 chr3 17675172 17675346 -200361812 + MER117 DNA MER1_type 6 180 -17 266 179 291 0 chr3 17675709 17675827 -200361331 - MIR SINE MIR -80 182 23 251 200 0 18 chr3 17675870 17675925 -200361233 + MER5B DNA MER1_type 119 172 -6 421 302 102 8 chr3 17675935 17676199 -200360959 - MIR SINE MIR -19 243 8 314 200 104 43 chr3 17676204 17676319 -200360839 + L1ME2 LINE L1 6041 6162 -2 480 229 49 33 chr3 17676561 17676683 -200360475 + L2 LINE L2 3147 3270 -2 982 166 13 0 chr3 17677126 17677283 -200359875 + FRAM SINE Alu 2 160 -6 426 221 55 19 chr3 17677737 17677865 -200359293 + MIR SINE MIR 60 191 -62 334 297 70 14 chr3 17677985 17678165 -200358993 + MIR SINE MIR 12 256 -6 375 250 30 0 chr3 17678675 17678775 -200358383 - MER5A DNA MER1_type -83 106 4 618 260 110 0 chr3 17679486 17679640 -200357518 - MER5B DNA MER1_type -6 172 2 2557 180 5 0 chr3 17680656 17681078 -200356080 - MSTB LTR MaLR 0 426 3 190 183 49 12 chr3 17681816 17681898 -200355260 + CT-rich Low_complexity Low_complexity 2 86 0 459 265 15 22 chr3 17682181 17682317 -200354841 - L2 LINE L2 0 3272 3138 274 318 120 19 chr3 17682859 17683117 -200354041 + L1MC/D LINE L1 5519 5802 -2006 292 250 217 0 chr3 17683152 17683244 -200353914 - MIR3 SINE MIR -8 200 89 724 213 45 93 chr3 17683530 17683747 -200353411 - MER113 DNA MER1_type? -191 330 104 1661 123 77 0 chr3 17683747 17684007 -200353151 + AluJb SINE Alu 1 280 -32 306 0 0 0 chr3 17684007 17684041 -200353117 + (TAA)n Simple_repeat Simple_repeat 2 35 0 724 213 45 93 chr3 17684041 17684156 -200353002 - MER113 DNA MER1_type? -415 106 13 1123 264 140 5 chr3 17684543 17685207 -200351951 - L2 LINE L2 0 3313 2565 402 296 22 15 chr3 17685524 17685659 -200351499 + L2 LINE L2 3137 3272 0 228 247 0 0 chr3 17685674 17685759 -200351399 + (TGGA)n Simple_repeat Simple_repeat 4 88 0 1434 134 11 22 chr3 17685795 17685822 -200351336 - L1MA9 LINE L1 -17 6161 6135 638 153 9 0 chr3 17685822 17685933 -200351225 - L1MA9 LINE L1 -5 6307 6196 1434 134 11 22 chr3 17685933 17686171 -200350987 - L1MA9 LINE L1 -43 6135 5893 210 328 0 0 chr3 17686622 17686680 -200350478 - MIR SINE MIR -59 149 92 371 246 70 18 chr3 17686697 17686811 -200350347 - L2 LINE L2 -218 3054 2935 215 336 44 26 chr3 17686861 17686974 -200350184 - L2 LINE L2 -468 2846 2732 826 222 109 27 chr3 17687010 17687231 -200349927 + MIR SINE MIR 4 242 -20 210 320 39 39 chr3 17687299 17687402 -200349756 - L2 LINE L2 -606 2708 2606 1103 209 33 9 chr3 17687402 17687612 -200349546 + MER58A DNA MER1_type 8 222 -2 222 227 187 13 chr3 17688391 17688466 -200348692 + MIR SINE MIR 58 145 -117 566 206 44 37 chr3 17688777 17688913 -200348245 - MIR SINE MIR -56 152 16 479 326 62 6 chr3 17689216 17689394 -200347764 + MIR SINE MIR 15 202 -60 936 302 86 62 chr3 17690530 17691401 -200345757 + L2 LINE L2 1880 2771 -543 309 143 20 0 chr3 17691406 17691455 -200345703 - MER3 DNA MER1_type 0 209 160 683 198 41 0 chr3 17691464 17691585 -200345573 - FLAM_C SINE Alu -16 127 2 684 208 84 7 chr3 17691586 17691740 -200345418 - MER3 DNA MER1_type -43 166 1 270 328 148 15 chr3 17691740 17691968 -200345190 + L2 LINE L2 2769 3023 -249 331 109 0 31 chr3 17691977 17692041 -200345117 + (TGGA)n Simple_repeat Simple_repeat 2 63 0 2039 122 71 40 chr3 17692041 17692394 -200344764 + THE1B LTR MaLR 1 364 0 5195 77 20 10 chr3 17692394 17693087 -200344071 + THE1B-int LTR MaLR 1 700 -880 4323 96 2 0 chr3 17693073 17693635 -200343523 + THE1B-int LTR MaLR 1018 1580 0 * 2103 135 72 29 chr3 17693635 17693984 -200343174 + THE1B LTR MaLR 1 364 0 913 131 17 0 chr3 17693998 17694173 -200342985 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 3267 173 41 0 chr3 17694913 17695498 -200341660 + L1MB3 LINE L1 5573 6181 -2 309 314 73 0 chr3 17696017 17696141 -200341017 - MIR SINE MIR -21 241 109 731 315 14 0 chr3 17696397 17696619 -200340539 - MIR SINE MIR -15 247 23 403 269 106 14 chr3 17696628 17696769 -200340389 + L2 LINE L2 3116 3269 -3 291 259 159 59 chr3 17697117 17697287 -200339871 - MER5A DNA MER1_type -1 188 2 559 291 42 12 chr3 17697697 17697862 -200339296 + MER5A DNA MER1_type 20 189 0 375 243 29 0 chr3 17697883 17697995 -200339163 + MER5A DNA MER1_type 4 119 -70 745 233 157 80 chr3 17698959 17699566 -200337592 - L2 LINE L2 -26 3287 2625 324 279 27 0 chr3 17699600 17699711 -200337447 + L2 LINE L2 2896 3009 -263 40233 53 4 1 chr3 17699886 17705628 -200331530 + L1PA5 LINE L1 399 6158 0 195 274 20 0 chr3 17705632 17705683 -200331475 + MIR SINE MIR 97 148 -114 215 104 83 42 chr3 17706016 17706064 -200331094 - MIR SINE MIR -78 130 81 353 299 174 43 chr3 17706146 17706330 -200330828 + MIR SINE MIR 50 257 -5 258 105 0 0 chr3 17706775 17706813 -200330345 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 427 285 0 83 chr3 17706942 17707047 -200330111 - L2 LINE L2 0 3313 3222 493 258 15 8 chr3 17707047 17707179 -200329979 + MER94 DNA DNA 1 133 -1 427 285 0 83 chr3 17707179 17707217 -200329941 - L2 LINE L2 -91 3222 3182 335 263 23 4 chr3 17707223 17707359 -200329799 - MIR SINE MIR -10 252 57 278 305 67 19 chr3 17707500 17707605 -200329553 - L2 LINE L2 -206 3066 2957 717 209 127 6 chr3 17708416 17708574 -200328584 + MER45A DNA AcHobo 1 177 -1 476 266 50 65 chr3 17708656 17708764 -200328394 - MIR SINE MIR -6 256 151 2633 206 39 0 chr3 17708764 17709299 -200327859 - MER74A LTR ERVL -2 556 1 476 266 50 65 chr3 17709299 17709389 -200327769 - MIR SINE MIR -111 151 61 673 264 35 22 chr3 17710446 17710673 -200326485 + MIR SINE MIR 31 260 -2 216 195 0 0 chr3 17711388 17711429 -200325729 + L2 LINE L2 3270 3310 -3 235 271 0 0 chr3 17711841 17711889 -200325269 + polypyrimidine Low_complexity Low_complexity 3 50 0 1236 263 59 28 chr3 17711913 17712304 -200324854 + MLT1I LTR MaLR 6 408 -1 259 222 246 48 chr3 17712659 17712826 -200324332 + L3 LINE CR1 1274 1473 -104 2057 173 34 8 chr3 17712979 17713361 -200323797 - MSTD LTR MaLR 0 396 5 315 301 26 7 chr3 17713385 17713538 -200323620 - HAL1b LINE L1 -14 1334 1179 655 287 20 15 chr3 17713605 17713800 -200323358 - L1ME LINE L1 -312 5809 5614 330 262 57 33 chr3 17714059 17714181 -200322977 - MIR SINE MIR -30 232 108 356 273 125 0 chr3 17714532 17714660 -200322498 - MLT1L LTR MaLR -52 563 420 500 224 48 8 chr3 17714733 17714858 -200322300 - MLT1L LTR MaLR -317 298 169 234 360 45 9 chr3 17715013 17715124 -200322034 + L2 LINE L2 3138 3252 -20 189 107 0 0 chr3 17715132 17715160 -200321998 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 457 274 97 10 chr3 17715488 17715679 -200321479 - MIR SINE MIR -14 248 40 498 269 39 8 chr3 17715872 17716002 -200321156 + MIR SINE MIR 20 153 -109 1605 234 66 80 chr3 17717146 17717522 -200319636 - MLT1H LTR MaLR 0 549 180 2036 99 43 127 chr3 17717522 17717917 -200319241 + THE1B LTR MaLR 3 364 0 1605 234 66 80 chr3 17717917 17718052 -200319106 - MLT1H LTR MaLR -369 180 45 338 312 55 30 chr3 17718237 17718439 -200318719 + L1MD2 LINE L1 5406 5612 -509 2356 191 63 39 chr3 17718441 17719008 -200318150 + L1MD2 LINE L1 5766 6346 -13 658 248 0 0 chr3 17719152 17719277 -200317881 - L2 LINE L2 0 3313 3189 413 233 60 9 chr3 17719505 17719621 -200317537 + L2 LINE L2 3180 3301 -12 261 234 141 0 chr3 17720960 17721046 -200316112 + MIR SINE MIR 49 157 -51 333 343 9 0 chr3 17721743 17721851 -200315307 - MIR SINE MIR -97 165 57 394 233 0 0 chr3 17721997 17722070 -200315088 - L2 LINE L2 -11 3302 3230 313 240 27 0 chr3 17722405 17722480 -200314678 + MIR SINE MIR 78 154 -108 453 62 0 0 chr3 17722501 17722566 -200314592 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 231 360 70 0 chr3 17723577 17723663 -200313495 - MIR SINE MIR -63 199 108 298 253 0 53 chr3 17724865 17724960 -200312198 + MIR SINE MIR 118 207 -55 2079 155 0 0 chr3 17725103 17725406 -200311752 - AluSx SINE Alu -7 305 3 629 294 36 4 chr3 17725625 17725848 -200311310 - MIR SINE MIR 0 262 35 228 204 0 0 chr3 17726030 17726074 -200311084 + MIR SINE MIR 108 151 -111 250 235 62 12 chr3 17726235 17726316 -200310842 + MIR SINE MIR 166 250 -12 2490 72 0 0 chr3 17726321 17726614 -200310544 - AluY SINE Alu -18 293 1 225 154 0 0 chr3 17726920 17726959 -200310199 + A-rich Low_complexity Low_complexity 1 39 0 425 281 110 0 chr3 17727278 17727442 -200309716 - MER91A DNA MER1_type -5 191 10 222 37 0 0 chr3 17727444 17727471 -200309687 + (CA)n Simple_repeat Simple_repeat 1 27 0 278 230 0 68 chr3 17727801 17727875 -200309283 - MIR SINE MIR -70 192 124 273 320 16 16 chr3 17728250 17728375 -200308783 - MARNA DNA Mariner -114 472 348 1015 259 108 28 chr3 17728481 17728906 -200308252 - MLT1K LTR MaLR -4 584 126 712 115 0 69 chr3 17729049 17729179 -200307979 + FRAM SINE Alu 26 146 -30 405 265 9 0 chr3 17729179 17729287 -200307871 - L1MCa LINE L1 -1339 6983 1995 396 255 0 66 chr3 17729214 17729320 -200307838 + L1MC4 LINE L1 6614 6712 -1330 * 511 269 163 29 chr3 17729699 17730048 -200307110 - MER113 DNA MER1_type? -125 396 1 267 319 130 32 chr3 17730369 17730585 -200306573 + MIR SINE MIR 20 256 -6 433 302 133 44 chr3 17731198 17731701 -200305457 + L2 LINE L2 2240 2787 -527 581 284 147 4 chr3 17731857 17732082 -200305076 + Charlie8 DNA MER1_type 9 265 -2152 346 316 26 0 chr3 17732522 17732636 -200304522 - MIR SINE MIR -29 233 117 1357 212 3 35 chr3 17732837 17732926 -200304232 + AluJo SINE Alu 33 123 -189 2375 105 0 0 chr3 17732926 17733221 -200303937 - AluSx SINE Alu -17 295 1 1357 212 3 35 chr3 17733221 17733419 -200303739 + AluJo SINE Alu 123 311 -1 423 245 46 58 chr3 17733449 17733625 -200303533 + MIR SINE MIR 42 214 -48 267 237 158 0 chr3 17734067 17734143 -200303015 + L2 LINE L2 3179 3266 -6 297 0 0 0 chr3 17734153 17734186 -200302972 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 741 93 0 0 chr3 17734185 17734292 -200302866 + (GA)n Simple_repeat Simple_repeat 2 108 0 185 178 22 0 chr3 17734438 17734483 -200302675 + MIR SINE MIR 70 115 -147 1090 141 0 12 chr3 17735551 17735714 -200301444 + FRAM SINE Alu 2 162 -14 301 398 47 21 chr3 17735923 17736202 -200300956 + L2 LINE L2 2985 3270 -2 375 280 47 23 chr3 17737280 17737429 -200299729 - L1MC4 LINE L1 -1306 7016 1995 471 311 89 26 chr3 17739026 17739216 -200297942 + MIR SINE MIR 59 260 -2 1303 288 104 18 chr3 17739495 17740093 -200297065 + L2 LINE L2 1792 2440 -874 1558 273 71 53 chr3 17740119 17740819 -200296339 + MER21B LTR ERV1 25 737 -126 1021 264 190 10 chr3 17740835 17741548 -200295610 + L2 LINE L2 2458 3313 0 449 271 15 41 chr3 17741819 17742000 -200295158 + MIR SINE MIR 19 192 -62 456 299 85 24 chr3 17742321 17742615 -200294543 - L2 LINE L2 -419 2895 2584 196 208 42 0 chr3 17742669 17742717 -200294441 - L2 LINE L2 -831 2483 2434 1962 168 54 0 chr3 17743416 17743786 -200293372 + MLT1B LTR MaLR 1 390 0 719 289 61 48 chr3 17744017 17744539 -200292619 - L1ME4a LINE L1 -3 6118 5590 378 262 14 64 chr3 17744808 17744949 -200292209 - MIR SINE MIR -118 144 11 624 276 113 0 chr3 17745424 17745645 -200291513 + MIR SINE MIR 11 256 -6 1101 259 71 25 chr3 17747740 17748188 -200288970 - LTR33 LTR ERVL -52 469 1 259 250 48 29 chr3 17748732 17748836 -200288322 - MIR3 SINE MIR -41 167 62 433 217 22 0 chr3 17749008 17749100 -200288058 - MIR SINE MIR -58 150 100 574 304 31 5 chr3 17750138 17750329 -200286829 + MIR SINE MIR 43 238 -24 1875 148 34 17 chr3 17750331 17750629 -200286529 - AluJo SINE Alu -4 308 6 405 304 17 0 chr3 17751156 17751271 -200285887 + MIR3 SINE MIR 42 158 -50 437 214 62 9 chr3 17751337 17751449 -200285709 - MER103 DNA DNA -46 120 3 196 276 0 0 chr3 17751499 17751557 -200285601 + MIR3 SINE MIR 151 208 0 347 67 0 33 chr3 17751962 17752022 -200285136 + (TGAA)n Simple_repeat Simple_repeat 2 59 0 983 217 70 60 chr3 17753061 17753430 -200283728 - MER113 DNA MER1_type? -147 374 2 290 273 40 0 chr3 17753430 17753529 -200283629 - MIR3 SINE MIR -47 161 59 594 234 0 0 chr3 17753764 17753982 -200283176 + (TGGA)n Simple_repeat Simple_repeat 1 218 0 468 0 0 0 chr3 17754142 17754194 -200282964 + (CA)n Simple_repeat Simple_repeat 2 53 0 315 350 56 12 chr3 17754223 17754383 -200282775 + MIR3 SINE MIR 16 182 -26 385 298 63 13 chr3 17754754 17754912 -200282246 + MIR SINE MIR 37 202 -60 641 315 106 17 chr3 17754975 17755648 -200281510 - L2 LINE L2 0 3313 2572 2615 216 17 25 chr3 17756034 17756622 -200280536 + MER82 DNA MER2_type 1 583 -70 290 253 94 6 chr3 17756811 17756969 -200280189 - MIR SINE MIR -70 192 14 3152 71 11 13 chr3 17757439 17757887 -200279271 - L1PA13 LINE L1 0 6163 5717 258 200 83 0 chr3 17757895 17757955 -200279203 + MIR SINE MIR 79 143 -119 242 257 71 82 chr3 17758013 17758197 -200278961 - MIR SINE MIR -50 212 32 642 262 112 5 chr3 17758295 17758509 -200278649 + MIR SINE MIR 13 249 -13 557 241 83 7 chr3 17758649 17758794 -200278364 - MIR SINE MIR -92 170 15 208 322 111 0 chr3 17759275 17759365 -200277793 + MIR SINE MIR 25 124 -84 457 261 150 42 chr3 17759382 17759669 -200277489 + MER102b DNA MER1_type 22 339 -2 180 237 0 0 chr3 17759789 17759827 -200277331 + L2 LINE L2 3267 3304 -9 704 267 26 10 chr3 17760348 17760543 -200276615 + MIR SINE MIR 15 212 -50 331 215 0 0 chr3 17761338 17761403 -200275755 + MLT1L LTR MaLR 327 391 -224 399 267 48 0 chr3 17762439 17762544 -200274614 - Charlie8 DNA MER1_type -2235 182 73 8155 230 65 13 chr3 17763799 17766333 -200270825 + L1MEc LINE L1 35 2657 -3558 625 226 0 30 chr3 17766331 17766495 -200270663 + L1M4 LINE L1 5046 5204 -942 * 857 173 73 17 chr3 17766574 17766753 -200270405 - MLT1A1 LTR MaLR -7 358 170 24 0 0 0 chr3 17767144 17767168 -200269990 + GC_rich Low_complexity Low_complexity 1 24 0 225 94 0 0 chr3 17767401 17767433 -200269725 + (CCG)n Simple_repeat Simple_repeat 3 34 0 279 241 43 0 chr3 17767453 17767569 -200269589 + (CCG)n Simple_repeat Simple_repeat 3 123 0 * 308 270 26 26 chr3 17767491 17767643 -200269515 + C-rich Low_complexity Low_complexity 4 155 0 586 315 26 39 chr3 17769651 17769959 -200267199 - Charlie8 DNA MER1_type -2073 344 41 251 340 19 0 chr3 17770193 17770296 -200266862 + MIR SINE MIR 45 149 -59 213 39 0 0 chr3 17770299 17770325 -200266833 + (TG)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr3 17771405 17771427 -200265731 + AT_rich Low_complexity Low_complexity 1 22 0 1759 172 3 3 chr3 17971738 17972023 -200065135 - AluJb SINE Alu -27 285 1 2434 82 3 13 chr3 17972029 17972345 -200064813 - AluSp SINE Alu 0 313 1 261 149 21 0 chr3 17972352 17972399 -200064759 + L1MD1 LINE L1 6182 6229 -13 325 229 119 37 chr3 17972490 17972599 -200064559 - L2 LINE L2 -8 3305 3188 217 214 71 0 chr3 17972726 17972782 -200064376 + MIR SINE MIR 196 255 -7 2400 85 3 0 chr3 17972985 17973290 -200063868 + AluSq SINE Alu 1 306 -7 310 247 12 12 chr3 17973582 17973663 -200063495 - MER5A DNA MER1_type -84 105 25 690 318 8 13 chr3 17973698 17973934 -200063224 + MIR SINE MIR 28 262 0 2284 113 6 3 chr3 17974140 17974451 -200062707 - AluSx SINE Alu 0 312 1 337 213 43 32 chr3 17974473 17974567 -200062591 - MER117 DNA MER1_type -47 150 56 185 331 150 24 chr3 17974604 17974731 -200062427 - MIR3 SINE MIR -48 160 18 1776 171 0 4 chr3 17975231 17975505 -200061653 + AluJb SINE Alu 1 273 -39 838 170 0 22 chr3 17975505 17975767 -200061391 + GA-rich Low_complexity Low_complexity 1 256 0 223 245 0 20 chr3 17975767 17975816 -200061342 + polypurine Low_complexity Low_complexity 1 48 0 838 165 90 66 chr3 17975954 17976166 -200060992 + MER20 DNA MER1_type 1 217 -2 219 284 15 15 chr3 17977099 17977166 -200059992 + MER5B DNA MER1_type 2 68 -110 330 269 21 11 chr3 17977881 17977974 -200059184 + L2 LINE L2 3179 3272 0 223 365 52 9 chr3 17979076 17979191 -200057967 + MIR SINE MIR 16 135 -73 1877 156 0 10 chr3 17979934 17980241 -200056917 - AluJo SINE Alu -8 304 1 196 260 83 42 chr3 17981181 17981277 -200055881 - L2 LINE L2 -64 3208 3109 2447 73 3 10 chr3 17981292 17981640 -200055518 - AluSp SINE Alu 0 346 1 2507 57 3 3 chr3 17981891 17982188 -200054970 + AluY SINE Alu 1 297 -14 311 262 29 19 chr3 17982224 17982327 -200054831 + MIR SINE MIR 51 154 -108 201 189 38 0 chr3 17982669 17982722 -200054436 + (TTG)n Simple_repeat Simple_repeat 3 57 0 24 0 0 0 chr3 17982838 17982862 -200054296 + AT_rich Low_complexity Low_complexity 1 24 0 2079 133 0 3 chr3 17983438 17983782 -200053376 - AluSx SINE Alu 0 312 1 385 307 70 35 chr3 17984134 17984362 -200052796 + MLT1K LTR MaLR 345 580 -8 545 242 47 56 chr3 17984644 17984859 -200052299 + MLT1L LTR MaLR 195 407 -208 2147 132 3 0 chr3 17985447 17985758 -200051400 + AluSx SINE Alu 1 312 0 339 69 0 69 chr3 17985896 17985954 -200051204 - MADE1 DNA Mariner -26 54 1 2076 106 48 0 chr3 17985980 17986272 -200050886 + AluSx SINE Alu 1 306 -6 620 286 17 6 chr3 17986368 17986543 -200050615 + MIR3 SINE MIR 21 197 -11 412 162 0 0 chr3 17986930 17986998 -200050160 - Alu SINE Alu -5 307 240 2804 26 0 0 chr3 17987112 17987423 -200049735 - AluY SINE Alu 0 311 1 526 304 90 29 chr3 17987695 17987979 -200049179 - L2 LINE L2 0 3272 2962 2503 47 10 7 chr3 17987979 17988280 -200048878 + AluY SINE Alu 1 302 -9 526 304 90 29 chr3 17988280 17988341 -200048817 - L2 LINE L2 -310 2962 2906 606 308 145 6 chr3 17988342 17988660 -200048498 - L2 LINE L2 -513 2801 2440 1471 186 90 4 chr3 17989574 17989853 -200047305 + AluJb SINE Alu 1 303 -9 235 306 192 29 chr3 17989886 17990131 -200047027 + MARNA DNA Mariner 125 409 -177 807 151 66 0 chr3 17990133 17990285 -200046873 - FRAM SINE Alu -15 161 1 288 319 26 9 chr3 17990721 17990837 -200046321 + L2 LINE L2 3193 3310 -3 551 220 57 0 chr3 17990988 17991129 -200046029 - MER5A DNA MER1_type -32 157 9 189 0 0 0 chr3 17991307 17991328 -200045830 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2260 101 0 3 chr3 17991386 17991683 -200045475 + AluSx SINE Alu 12 307 -5 2996 142 12 8 chr3 17992224 17992739 -200044419 + L1MB3 LINE L1 5660 6176 -7 2292 196 88 70 chr3 17992756 17992898 -200044260 + L1ME2 LINE L1 5429 5567 -597 2432 56 7 13 chr3 17992898 17993201 -200043957 + AluY SINE Alu 1 301 -10 2292 196 88 70 chr3 17993201 17993512 -200043646 + L1ME2 LINE L1 5567 5871 -293 1736 159 52 4 chr3 17993512 17993815 -200043343 - AluJo SINE Alu 0 316 1 2292 196 88 70 chr3 17993815 17993947 -200043211 + L1ME2 LINE L1 5871 5999 -165 2125 122 3 0 chr3 17993947 17994241 -200042917 - AluSx SINE Alu -17 295 1 2292 196 88 70 chr3 17994241 17994365 -200042793 + L1ME2 LINE L1 5999 6154 -10 1956 131 17 14 chr3 17994370 17994667 -200042491 + AluJo SINE Alu 5 302 -10 1095 176 75 24 chr3 17994842 17995097 -200042061 + ORSL DNA AcHobo 6 273 -2 2330 73 0 0 chr3 17995223 17995511 -200041647 + AluY SINE Alu 24 311 0 211 375 0 0 chr3 17995691 17995755 -200041403 - L2 LINE L2 -3 3269 3206 263 287 0 21 chr3 17995790 17995884 -200041274 - MIR3 SINE MIR -108 100 9 26 30 0 0 chr3 17996176 17996209 -200040949 + AT_rich Low_complexity Low_complexity 1 33 0 5886 142 77 39 chr3 17996296 17996899 -200040259 - Tigger3b DNA MER2_type -1797 1231 652 2264 95 3 0 chr3 17996899 17997193 -200039965 - AluSg SINE Alu -15 295 1 5886 142 77 39 chr3 17997193 17997775 -200039383 - Tigger3b DNA MER2_type -2376 652 1 27 0 0 0 chr3 17997845 17997872 -200039286 + AT_rich Low_complexity Low_complexity 1 27 0 607 108 0 0 chr3 17997908 17997991 -200039167 - AluJb SINE Alu -35 277 195 2105 117 0 17 chr3 17998240 17998538 -200038620 + AluSx SINE Alu 1 293 -19 296 235 0 0 chr3 17998881 17998949 -200038209 - MER5A DNA MER1_type -83 106 39 1052 185 95 18 chr3 17998984 17999206 -200037952 + MER8 DNA MER2_type 1 239 0 186 179 51 0 chr3 18000206 18000245 -200036913 - L2 LINE L2 -2128 1186 1146 2123 246 154 43 chr3 18000530 18001283 -200035875 + HAL1 LINE L1 661 1568 -939 2448 90 7 0 chr3 18001283 18001593 -200035565 + AluSx SINE Alu 1 312 0 2123 246 154 43 chr3 18001593 18001902 -200035256 + HAL1 LINE L1 1568 1841 -666 398 243 69 58 chr3 18001953 18002142 -200035016 - MIR SINE MIR -26 236 46 2222 114 0 13 chr3 18002611 18002926 -200034232 + AluSx SINE Alu 1 311 -1 2527 53 0 26 chr3 18003657 18003995 -200033163 + AluY SINE Alu 1 330 0 32 26 0 0 chr3 18004474 18004513 -200032645 + AT_rich Low_complexity Low_complexity 1 39 0 1726 172 14 17 chr3 18004829 18005126 -200032032 - AluJb SINE Alu -16 296 1 1695 101 141 25 chr3 18005210 18005487 -200031671 + AluSx SINE Alu 1 309 -3 223 231 64 13 chr3 18005645 18005723 -200031435 - L2 LINE L2 -310 3003 2922 1743 147 3 42 chr3 18005835 18005979 -200031179 + AluSx SINE Alu 1 130 -182 2450 91 0 3 chr3 18005979 18006287 -200030871 + AluSx SINE Alu 1 307 -5 1743 147 3 42 chr3 18006287 18006428 -200030730 + AluSx SINE Alu 130 275 -37 383 313 91 5 chr3 18006513 18006711 -200030447 + L3 LINE CR1 1339 1553 -24 2488 110 3 29 chr3 18006783 18006803 -200030355 + L1P5 LINE L1 5421 5440 -714 2008 94 83 0 chr3 18006803 18007079 -200030079 + AluSx SINE Alu 1 299 -13 2488 110 3 29 chr3 18007079 18007432 -200029726 + L1P5 LINE L1 5440 5784 -370 1391 137 24 0 chr3 18007432 18007637 -200029521 + AluSx SINE Alu 59 268 -44 1969 150 7 0 chr3 18007789 18008075 -200029083 + AluSx SINE Alu 4 291 -21 1930 163 0 20 chr3 18008237 18008538 -200028620 - AluJo SINE Alu -17 295 1 243 0 0 0 chr3 18008588 18008615 -200028543 + (TG)n Simple_repeat Simple_repeat 2 28 0 3141 139 29 0 chr3 18008689 18009058 -200028100 - L1PA14 LINE L1 -1 6160 5770 2321 101 0 0 chr3 18009058 18009354 -200027804 - AluSg SINE Alu -14 296 1 3141 139 29 0 chr3 18009354 18009500 -200027658 - L1PA14 LINE L1 -391 5770 5630 650 188 8 0 chr3 18009500 18009633 -200027525 + L1MB3 LINE L1 5198 5331 -815 549 176 0 0 chr3 18009633 18009718 -200027440 + FRAM SINE Alu 71 155 -21 4609 142 61 7 chr3 18009726 18010544 -200026614 + L1MB3 LINE L1 5320 6181 -2 496 284 60 40 chr3 18010661 18010911 -200026247 - MER112 DNA MER1_type -5 255 1 313 265 68 56 chr3 18011044 18011293 -200025865 - L1M4 LINE L1 -1487 4659 4408 848 162 0 7 chr3 18011325 18011467 -200025691 - FLAM_C SINE Alu -2 141 1 517 287 144 50 chr3 18011509 18012254 -200024904 - L1M4 LINE L1 -1810 4336 3522 308 285 81 49 chr3 18012335 18012581 -200024577 - L1M4 LINE L1 -2745 3401 3148 2169 99 7 14 chr3 18012594 18012888 -200024270 + AluSx SINE Alu 1 292 -20 261 194 24 10 chr3 18012916 18012979 -200024179 + L1MA8 LINE L1 5994 6059 -253 308 304 168 20 chr3 18013294 18013544 -200023614 - HAL1 LINE L1 -1409 1098 812 243 235 49 37 chr3 18014177 18014258 -200022900 - HAL1 LINE L1 -2413 94 13 189 0 0 0 chr3 18015011 18015032 -200022126 + (TTG)n Simple_repeat Simple_repeat 2 22 0 412 294 9 0 chr3 18015154 18015260 -200021898 + Charlie8 DNA MER1_type 103 209 -2208 701 101 74 81 chr3 18015260 18015418 -200021740 + MER63 DNA MER1_type 4 1651 -37 210 309 151 0 chr3 18015623 18015762 -200021396 + L3 LINE CR1 1050 1209 -368 1829 170 0 3 chr3 18016742 18017030 -200020128 + AluJb SINE Alu 1 287 -25 1862 91 4 0 chr3 18017155 18017397 -200019761 - AluSg/x SINE Alu 0 312 70 380 71 18 0 chr3 18017400 18017456 -200019702 + (GGAA)n Simple_repeat Simple_repeat 3 59 0 235 241 126 0 chr3 18017496 18017583 -200019575 - MIR SINE MIR -70 192 95 303 98 0 0 chr3 18017708 18017749 -200019409 + Alu SINE Alu 1 41 -261 2168 122 10 0 chr3 18017749 18018053 -200019105 + AluSx SINE Alu 5 311 -1 2392 97 0 3 chr3 18018059 18018370 -200018788 + AluSg SINE Alu 1 310 0 993 140 27 0 chr3 18018955 18019105 -200018053 + AluJb SINE Alu 137 290 -22 2032 132 28 0 chr3 18019484 18019773 -200017385 - AluSx SINE Alu -15 297 1 563 237 0 6 chr3 18019789 18019962 -200017196 + CT-rich Low_complexity Low_complexity 2 173 0 246 340 19 19 chr3 18019968 18020071 -200017087 - L2 LINE L2 -26 3287 3185 780 293 37 28 chr3 18020177 18020596 -200016562 - L2 LINE L2 -169 3144 2713 2229 126 0 0 chr3 18020596 18020905 -200016253 - AluSx SINE Alu -3 309 1 780 293 37 28 chr3 18020905 18020966 -200016192 - L2 LINE L2 -600 2713 2654 873 127 6 73 chr3 18020971 18021104 -200016054 - LTR34 LTR ERV1 -542 157 35 2469 61 0 10 chr3 18021104 18021401 -200015757 - AluY SINE Alu -17 294 1 873 127 6 73 chr3 18021401 18021432 -200015726 - LTR34 LTR ERV1 -664 35 4 922 204 104 12 chr3 18021465 18021705 -200015453 - MLT1J2 LTR MaLR -123 327 66 397 288 70 41 chr3 18021798 18022041 -200015117 - L2 LINE L2 -830 2484 2235 382 200 129 43 chr3 18022217 18022357 -200014801 - L2 LINE L2 -4 3309 3158 2376 69 3 47 chr3 18022360 18022680 -200014478 + AluY SINE Alu 1 306 -5 2036 136 7 0 chr3 18022687 18022973 -200014185 + AluJo SINE Alu 4 291 -21 1722 170 0 4 chr3 18023002 18023267 -200013891 + AluJb SINE Alu 45 308 -4 722 260 12 54 chr3 18023342 18023600 -200013558 - L2 LINE L2 -263 3050 2804 275 316 8 8 chr3 18024698 18024815 -200012343 + LTR67 LTR ERVL 435 551 -6 2380 70 3 0 chr3 18024890 18025225 -200011933 - AluSp SINE Alu 0 336 1 560 311 42 42 chr3 18025835 18026028 -200011130 + MIR SINE MIR 13 205 -57 615 220 119 6 chr3 18026341 18026509 -200010649 + MER5A DNA MER1_type 3 189 0 242 332 16 47 chr3 18026521 18026724 -200010434 + L2 LINE L2 2773 2961 -311 437 191 10 13 chr3 18026935 18027035 -200010123 + MLT1J LTR MaLR 63 199 -265 1198 134 0 0 chr3 18027131 18027303 -200009855 + AluSg/x SINE Alu 135 306 -4 339 276 71 0 chr3 18027482 18027580 -200009578 + L2 LINE L2 3167 3271 -1 185 0 40 0 chr3 18027683 18027708 -200009450 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 196 329 27 14 chr3 18027810 18027883 -200009275 + L2 LINE L2 2714 2787 -527 787 269 20 0 chr3 18028348 18028549 -200008609 + MIR SINE MIR 1 205 -57 2199 123 10 3 chr3 18028742 18029042 -200008116 + AluSq SINE Alu 1 302 -11 363 192 40 139 chr3 18029415 18029452 -200007706 + L1MC4 LINE L1 7782 7821 -221 2478 84 0 0 chr3 18029452 18029750 -200007408 - AluSg1 SINE Alu -11 298 1 363 192 40 139 chr3 18029750 18029863 -200007295 + L1MC4 LINE L1 7821 7917 -125 472 265 14 115 chr3 18030977 18031135 -200006023 - MER112 DNA MER1_type 0 260 88 1703 162 3 30 chr3 18031135 18031437 -200005721 - AluJo SINE Alu -10 302 9 472 265 14 115 chr3 18031437 18031515 -200005643 - MER112 DNA MER1_type -172 88 55 1804 150 0 20 chr3 18031515 18031809 -200005349 - AluJo SINE Alu -24 288 1 472 265 14 115 chr3 18031809 18031858 -200005300 - MER112 DNA MER1_type -205 55 3 1937 131 3 37 chr3 18032624 18032921 -200004237 + AluSx SINE Alu 6 292 -20 1901 164 3 20 chr3 18033927 18034225 -200002933 + AluSx SINE Alu 1 293 -19 221 284 55 64 chr3 18034960 18035069 -200002089 + L3 LINE CR1 1012 1119 -458 2381 167 60 0 chr3 18035477 18035879 -200001279 + MSTB LTR MaLR 1 426 0 341 243 153 21 chr3 18036003 18036148 -200001010 - MIR SINE MIR -62 146 30 2042 123 0 60 chr3 18036730 18037046 -200000112 + AluSx SINE Alu 1 297 -15 451 150 0 0 chr3 18037079 18037159 -199999999 + FLAM_C SINE Alu 62 141 -2 1052 94 0 0 chr3 18038369 18038497 -199998661 + AluSq/x SINE Alu 6 133 -180 2453 86 0 6 chr3 18038501 18038816 -199998342 + AluSp SINE Alu 1 313 0 238 211 145 13 chr3 18039047 18039123 -199998035 + MER103 DNA DNA 3 88 -78 1910 41 5 0 chr3 18040119 18040340 -199996818 + AluY SINE Alu 77 298 -13 1830 153 3 42 chr3 18041447 18041755 -199995403 + AluJb SINE Alu 12 307 -5 1714 164 3 33 chr3 18041974 18042278 -199994880 + AluJo SINE Alu 5 299 -13 555 200 54 0 chr3 18042459 18042589 -199994569 + MIR SINE MIR 56 192 -70 242 323 117 49 chr3 18042677 18043035 -199994123 - L2 LINE L2 -194 3078 2707 1934 149 10 7 chr3 18043182 18043483 -199993675 + AluSx SINE Alu 1 302 -10 2296 108 0 3 chr3 18043558 18043863 -199993295 + AluSg SINE Alu 1 304 -6 2589 135 47 0 chr3 18044258 18044665 -199992493 - MSTB LTR MaLR 0 426 1 2294 108 3 0 chr3 18045220 18045516 -199991642 + AluSx SINE Alu 1 297 -15 2167 134 0 10 chr3 18045525 18045660 -199991498 + AluJb SINE Alu 1 136 -176 1942 84 42 90 chr3 18045660 18045970 -199991188 + AluY SINE Alu 1 295 -16 2167 134 0 10 chr3 18045970 18046139 -199991019 + AluJb SINE Alu 136 302 -10 184 350 0 0 chr3 18046595 18046655 -199990503 - L2 LINE L2 -1 3271 3212 * 203 275 55 83 chr3 18046635 18046744 -199990414 + MIR SINE MIR 59 164 -98 212 297 242 11 chr3 18046985 18047076 -199990082 - MIR SINE MIR -81 127 16 251 28 28 0 chr3 18047957 18047993 -199989165 + (TA)n Simple_repeat Simple_repeat 2 38 0 996 132 0 0 chr3 18048810 18048946 -199988212 + AluSq/x SINE Alu 1 136 -176 230 159 0 0 chr3 18048946 18048990 -199988168 + A-rich Low_complexity Low_complexity 1 44 0 2578 47 7 0 chr3 18049255 18049552 -199987606 + AluY SINE Alu 1 299 -12 2370 97 3 0 chr3 18049733 18050032 -199987126 - AluSx SINE Alu -12 300 1 3250 213 9 8 chr3 18050035 18050420 -199986738 + MER82 DNA MER2_type 8 396 -257 2498 81 7 0 chr3 18050420 18050728 -199986430 + AluSq SINE Alu 1 310 -3 3250 213 9 8 chr3 18050728 18050986 -199986172 + MER82 DNA MER2_type 396 652 -1 509 187 0 9 chr3 18051476 18051583 -199985575 - MER82 DNA MER2_type -170 483 378 732 120 14 78 chr3 18051897 18052039 -199985119 - FLAM_C SINE Alu 0 133 1 298 236 149 40 chr3 18052198 18052372 -199984786 - MIR SINE MIR -38 224 32 225 301 86 55 chr3 18052702 18052865 -199984293 - MIR3 SINE MIR -31 177 10 369 314 157 0 chr3 18056324 18056464 -199980694 + MIR SINE MIR 21 182 -80 232 290 80 12 chr3 18057017 18057179 -199979979 + L1MB8 LINE L1 5769 5941 -237 1288 127 5 39 chr3 18057237 18057297 -199979861 + AluSg/x SINE Alu 79 140 -172 2179 105 21 0 chr3 18057297 18057582 -199979576 + AluSg SINE Alu 1 291 -19 1288 127 5 39 chr3 18057582 18057726 -199979432 + AluSg/x SINE Alu 140 276 -36 245 29 0 29 chr3 18057727 18057762 -199979396 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 2096 153 0 3 chr3 18057906 18058219 -199978939 + AluJo SINE Alu 1 312 0 285 230 46 0 chr3 18058446 18058533 -199978625 + L1MC5 LINE L1 7771 7861 -100 225 0 0 0 chr3 18058628 18058653 -199978505 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 2342 104 10 0 chr3 18058663 18058970 -199978188 - AluSx SINE Alu -2 310 1 2171 112 0 60 chr3 18058972 18059303 -199977855 - AluSx SINE Alu -1 311 1 186 43 0 0 chr3 18060017 18060040 -199977118 + (TTC)n Simple_repeat Simple_repeat 2 24 0 2352 103 0 0 chr3 18060042 18060334 -199976824 - AluSq SINE Alu -21 292 1 207 203 0 149 chr3 18060657 18060731 -199976427 + L2 LINE L2 3209 3271 -1 2191 130 7 0 chr3 18061057 18061365 -199975793 + AluSg SINE Alu 1 310 0 2336 88 3 0 chr3 18061376 18061689 -199975469 + AluSx SINE Alu 1 314 0 412 341 71 62 chr3 18061792 18062229 -199974929 + L2 LINE L2 2830 3270 -2 617 225 81 17 chr3 18062876 18063049 -199974109 + MIR SINE MIR 79 262 0 2539 81 3 0 chr3 18063136 18063445 -199973713 - AluSp SINE Alu -3 310 1 590 329 24 0 chr3 18063445 18063652 -199973506 + MIR SINE MIR 39 250 -12 306 235 276 6 chr3 18063861 18064031 -199973127 - MIR SINE MIR -8 254 39 2120 101 52 3 chr3 18065030 18065317 -199971841 + AluSx SINE Alu 1 301 -11 1658 179 29 32 chr3 18065358 18065671 -199971487 + AluJo SINE Alu 1 312 0 2217 98 0 44 chr3 18066271 18066586 -199970572 - AluY SINE Alu -10 301 1 1742 145 7 31 chr3 18066590 18066879 -199970279 - AluJb SINE Alu -24 288 7 2017 128 0 52 chr3 18067074 18067402 -199969756 + AluJo SINE Alu 1 311 -1 279 211 0 0 chr3 18067418 18067470 -199969688 + LTR30 LTR ERV1 1 52 -670 1444 129 179 150 chr3 18067470 18067961 -199969197 + LTR12 LTR ERV1 100 581 -133 189 277 123 0 chr3 18067970 18068035 -199969123 + L2 LINE L2 3186 3258 -14 2317 113 0 0 chr3 18068636 18068936 -199968222 + AluSx SINE Alu 1 300 -12 1878 151 0 18 chr3 18069417 18069702 -199967456 + AluJo SINE Alu 1 280 -32 2551 59 10 0 chr3 18069831 18070138 -199967020 + AluY SINE Alu 1 310 -1 564 214 75 75 chr3 18070653 18070813 -199966345 + MIR SINE MIR 2 164 -98 2450 96 0 0 chr3 18070813 18071116 -199966042 + AluSx SINE Alu 1 303 -9 564 214 75 75 chr3 18071116 18071156 -199966002 + MIR SINE MIR 163 202 -60 1336 145 0 0 chr3 18071349 18071542 -199965616 + AluSx SINE Alu 1 193 -119 1206 128 6 0 chr3 18071558 18071753 -199965405 + AluY SINE Alu 112 307 0 1913 152 0 0 chr3 18071852 18072128 -199965030 + AluJb SINE Alu 1 276 -36 2467 64 7 7 chr3 18072236 18072531 -199964627 + AluY SINE Alu 3 297 -14 2517 88 0 0 chr3 18073016 18073324 -199963834 + AluSx SINE Alu 3 310 -2 263 129 129 48 chr3 18073739 18073801 -199963357 - MIR SINE MIR -187 75 9 232 324 0 0 chr3 18073833 18073901 -199963257 + L2 LINE L2 3204 3271 -1 1869 115 80 3 chr3 18074127 18074413 -199962745 + AluSq SINE Alu 1 308 -5 1861 149 7 10 chr3 18074496 18074791 -199962367 - AluJb SINE Alu -18 294 1 417 289 35 7 chr3 18075020 18075162 -199961996 - MIR SINE MIR -69 193 48 2001 129 26 7 chr3 18075340 18075643 -199961515 - AluJb SINE Alu -1 311 3 2606 58 0 0 chr3 18075833 18076141 -199961017 - AluY SINE Alu -3 308 1 516 266 34 44 chr3 18076652 18076881 -199960277 - MIR SINE MIR -1 261 32 2229 118 3 0 chr3 18077053 18077350 -199959808 - AluSx SINE Alu -14 298 1 1767 167 6 16 chr3 18077506 18077817 -199959341 - AluJb SINE Alu -4 308 1 37 0 0 0 chr3 18077866 18077903 -199959255 + AT_rich Low_complexity Low_complexity 1 37 0 1621 179 10 13 chr3 18077917 18078218 -199958940 - AluJo SINE Alu -12 300 1 928 131 0 38 chr3 18078227 18078387 -199958771 - L1MD1 LINE L1 0 6242 6089 2285 106 0 0 chr3 18078425 18078718 -199958440 - AluSx SINE Alu -19 293 1 1200 182 27 141 chr3 18078730 18078976 -199958182 - L1MD1 LINE L1 -445 5739 5576 2337 88 3 0 chr3 18078976 18079272 -199957886 - AluSg SINE Alu -13 297 1 1200 182 27 141 chr3 18079272 18079482 -199957676 - L1MD1 LINE L1 -608 5576 5344 1773 181 3 3 chr3 18079488 18079787 -199957371 - AluJb SINE Alu -13 299 1 300 362 31 39 chr3 18080094 18080351 -199956807 - L2 LINE L2 -86 3186 2932 1714 122 4 4 chr3 18080464 18080701 -199956457 - AluSx SINE Alu -37 275 39 180 0 0 0 chr3 18080705 18080725 -199956433 + (T)n Simple_repeat Simple_repeat 1 20 0 761 233 15 68 chr3 18080808 18081014 -199956144 - MER58A DNA MER1_type -28 196 2 327 167 0 30 chr3 18082848 18082914 -199954244 - Alu SINE Alu -6 295 232 2467 61 0 3 chr3 18082939 18083232 -199953926 - AluSq SINE Alu -21 292 1 24 0 0 0 chr3 18083234 18083258 -199953900 + AT_rich Low_complexity Low_complexity 1 24 0 2533 161 117 13 chr3 18083259 18083409 -199953749 - L1PB4 LINE L1 -10 6146 6013 2200 106 0 34 chr3 18083409 18083730 -199953428 - AluY SINE Alu -1 310 1 2533 161 117 13 chr3 18083730 18084120 -199953038 - L1PB4 LINE L1 -143 6013 5550 392 297 57 31 chr3 18084141 18084303 -199952855 - MIR SINE MIR -38 224 55 2179 139 0 0 chr3 18084303 18084606 -199952552 - AluSx SINE Alu -9 303 1 392 297 57 31 chr3 18084606 18084635 -199952523 - MIR SINE MIR -207 55 28 29 0 0 0 chr3 18084723 18084752 -199952406 + AT_rich Low_complexity Low_complexity 1 29 0 809 153 0 0 chr3 18084752 18084870 -199952288 - FLAM_C SINE Alu -25 118 1 2362 97 7 0 chr3 18085157 18085467 -199951691 + AluSx SINE Alu 1 312 0 1577 155 71 76 chr3 18085932 18086221 -199950937 - MLT1A1 LTR MaLR 0 365 77 2321 81 7 3 chr3 18086221 18086519 -199950639 - AluSg SINE Alu -11 299 1 1577 155 71 76 chr3 18086519 18086596 -199950562 - MLT1A1 LTR MaLR -288 77 1 497 172 2 16 chr3 18087015 18087116 -199950042 + L1P5 LINE L1 5697 5791 -360 508 193 37 37 chr3 18087118 18087227 -199949931 + MER7A DNA MER2_type 1 107 -239 21 0 0 0 chr3 18087348 18087369 -199949789 + AT_rich Low_complexity Low_complexity 1 21 0 2553 50 0 17 chr3 18087369 18087670 -199949488 - AluY SINE Alu -15 296 1 722 222 0 0 chr3 18087678 18087804 -199949354 - FLAM_A SINE Alu -7 126 1 1484 163 15 15 chr3 18087804 18088068 -199949090 + MER7A DNA MER2_type 74 337 0 314 167 15 30 chr3 18088086 18088152 -199949006 + Tigger5 DNA MER2_type 2254 2318 -5 2681 151 64 4 chr3 18088157 18088642 -199948516 + L1MA9 LINE L1 5798 6311 -1 2353 168 151 118 chr3 18088797 18088864 -199948294 - L1MB7 LINE L1 -9 6175 6112 2270 112 0 0 chr3 18088864 18089160 -199947998 + AluSx SINE Alu 1 296 -16 2353 168 151 118 chr3 18089160 18089589 -199947569 - L1MB7 LINE L1 -72 6112 5699 1469 142 29 16 chr3 18089589 18089835 -199947323 - AluJo SINE Alu -24 288 40 2353 168 151 118 chr3 18089835 18090292 -199946866 - L1MB7 LINE L1 -485 5699 5178 2035 150 63 11 chr3 18090296 18090662 -199946496 + MSTB1 LTR MaLR 1 385 -47 1072 176 45 9 chr3 18090661 18090882 -199946276 - MSTB1 LTR MaLR -200 232 4 * 698 344 129 24 chr3 18090907 18091783 -199945375 + L2 LINE L2 2060 3035 -237 640 235 150 5 chr3 18091822 18092035 -199945123 + MIR SINE MIR 1 244 -18 2165 123 0 0 chr3 18092805 18093138 -199944020 + AluSx SINE Alu 1 333 0 354 246 113 21 chr3 18093143 18093285 -199943873 + MIR3 SINE MIR 42 196 -12 2059 156 0 3 chr3 18093616 18093924 -199943234 + AluJb SINE Alu 1 307 -5 858 176 93 32 chr3 18095114 18095330 -199941828 + MIR SINE MIR 13 241 -21 511 261 73 0 chr3 18095365 18095530 -199941628 + ERVL LTR ERVL 5150 5326 -438 2212 104 3 16 chr3 18095573 18095881 -199941277 + AluSx SINE Alu 9 312 0 1277 103 0 16 chr3 18096140 18096325 -199940833 - AluSg/x SINE Alu 0 312 131 249 267 86 48 chr3 18096472 18096577 -199940581 + LTR50 LTR ERVL 39 147 -648 2233 97 0 0 chr3 18096672 18096976 -199940182 - AluSc SINE Alu 0 304 1 1708 164 0 14 chr3 18096978 18097271 -199939887 - AluJb SINE Alu -23 289 1 275 167 4 0 chr3 18097413 18097469 -199939689 - FLAM SINE Alu -1 132 84 225 0 0 0 chr3 18097611 18097636 -199939522 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 270 0 0 0 chr3 18097639 18097669 -199939489 + (TTA)n Simple_repeat Simple_repeat 1 30 0 2254 104 0 0 chr3 18097675 18097955 -199939203 - AluSg SINE Alu -30 280 1 1545 138 42 12 chr3 18098004 18098244 -199938914 - AluJo SINE Alu -63 249 3 957 230 127 28 chr3 18098307 18098697 -199938461 - MLT1F1 LTR MaLR -102 447 1 463 221 26 0 chr3 18098822 18098935 -199938223 + LTR33A LTR ERVL 408 523 0 420 293 96 0 chr3 18098998 18099186 -199937972 - MIR SINE MIR -31 231 26 259 311 30 15 chr3 18099375 18099507 -199937651 + MIR3 SINE MIR 11 144 -64 1465 172 42 19 chr3 18099680 18099941 -199937217 - AluJo SINE Alu -45 267 1 2423 102 0 3 chr3 18100006 18100320 -199936838 + AluSq SINE Alu 1 313 0 422 310 76 0 chr3 18100456 18100614 -199936544 - MIR SINE MIR -87 175 6 235 244 61 122 chr3 18100917 18101229 -199935929 + MLT1K LTR MaLR 135 427 -161 370 292 35 0 chr3 18102514 18102627 -199934531 + L2 LINE L2 3150 3266 -6 541 159 138 43 chr3 18103640 18103778 -199933380 + MIR3 SINE MIR 19 169 -39 2493 242 96 25 chr3 18103987 18104144 -199933014 + L1ME3A LINE L1 5053 5197 -973 2179 106 0 3 chr3 18104144 18104437 -199932721 + AluSc SINE Alu 13 304 -5 2493 242 96 25 chr3 18104437 18105297 -199931861 + L1ME3A LINE L1 5197 6145 -25 454 265 26 0 chr3 18105344 18105461 -199931697 - L2 LINE L2 -2 3270 3151 1816 136 49 7 chr3 18105501 18105788 -199931370 - AluJo SINE Alu -11 301 3 212 340 211 12 chr3 18106630 18107057 -199930101 + L2 LINE L2 2349 2860 -454 234 265 15 0 chr3 18107658 18107726 -199929432 - MIR SINE MIR -70 192 124 6060 148 6 12 chr3 18108119 18110025 -199927133 + L1PA13 LINE L1 4247 6163 0 1052 183 5 48 chr3 18110285 18110493 -199926665 + AluJo SINE Alu 1 199 -113 294 295 201 7 chr3 18110643 18110792 -199926366 - MIR SINE MIR -78 184 7 4968 196 25 130 chr3 18110989 18112238 -199924920 + L1M2c LINE L1 2088 3467 -3321 1304 167 0 39 chr3 18112238 18112471 -199924687 + AluJo SINE Alu 87 310 -2 4968 196 25 130 chr3 18112471 18112700 -199924458 + L1M2c LINE L1 3467 3718 -3070 1591 155 54 32 chr3 18112700 18112977 -199924181 - AluJo SINE Alu -29 283 1 4968 196 25 130 chr3 18112977 18113290 -199923868 + L1M2c LINE L1 3718 4062 -2726 1551 204 17 13 chr3 18113290 18113589 -199923569 + AluJb SINE Alu 1 300 -12 4968 196 25 130 chr3 18113589 18114341 -199922817 + L1M2c LINE L1 4062 4570 -2218 2014 138 14 0 chr3 18114343 18114619 -199922539 + AluSx SINE Alu 3 282 -30 779 125 0 59 chr3 18114619 18114745 -199922413 + AluSg/x SINE Alu 167 286 -26 3633 126 41 48 chr3 18114745 18115430 -199921728 + L1PB4 LINE L1 5476 6155 -1 926 174 39 57 chr3 18115624 18115906 -199921252 - L1MC5 LINE L1 -44 7917 7641 1622 117 133 11 chr3 18116220 18116348 -199920810 - AluJb SINE Alu -6 296 185 2122 121 20 3 chr3 18116348 18116653 -199920505 - AluSx SINE Alu -2 310 1 1622 117 133 11 chr3 18116653 18116788 -199920370 - AluJb SINE Alu -117 185 1 877 143 0 15 chr3 18116790 18116923 -199920235 - FLAM_C SINE Alu -2 131 1 263 344 100 28 chr3 18117086 18117193 -199919965 + L2 LINE L2 3075 3202 -70 2579 106 22 6 chr3 18117193 18117551 -199919607 + THE1B LTR MaLR 1 364 0 263 344 100 28 chr3 18117551 18117623 -199919535 + L2 LINE L2 3202 3267 -5 320 299 0 0 chr3 18117648 18117735 -199919423 + L1MD3 LINE L1 5484 5570 -592 2407 217 72 40 chr3 18117742 18118534 -199918624 + HAL1 LINE L1 990 1806 -701 693 281 46 18 chr3 18118591 18118872 -199918286 + HAL1 LINE L1 2150 2438 -69 185 342 95 13 chr3 18119379 18119537 -199917621 + MIR3 SINE MIR 1 171 -37 210 209 23 0 chr3 18119901 18119944 -199917214 + L2 LINE L2 3224 3267 -5 1725 158 24 10 chr3 18120075 18120372 -199916786 - AluJo SINE Alu -11 301 1 205 234 21 0 chr3 18121775 18121822 -199915336 - MIR SINE MIR -129 79 32 22 35 0 0 chr3 18122090 18122119 -199915039 + AT_rich Low_complexity Low_complexity 1 29 0 1260 226 7 36 chr3 18122133 18122439 -199914719 + AluJb SINE Alu 1 297 -15 292 238 98 24 chr3 18123000 18123164 -199913994 + L1MD3 LINE L1 5844 6019 -1976 * 797 182 223 8 chr3 18123032 18123274 -199913884 + L1MB7 LINE L1 5878 6171 -13 2205 109 0 0 chr3 18123278 18123563 -199913595 - AluSx SINE Alu -11 301 17 277 257 31 2 chr3 18123563 18123671 -199913487 + ERVL LTR ERVL 2227 2377 -2658 784 361 15 3 chr3 18123755 18124090 -199913068 + ERVL LTR ERVL 4728 5066 -698 221 315 0 55 chr3 18124361 18124434 -199912724 - L2 LINE L2 -480 2834 2766 530 233 108 124 chr3 18124446 18124599 -199912559 + HAL1 LINE L1 575 724 -1783 2263 128 0 0 chr3 18124599 18124903 -199912255 + AluSx SINE Alu 1 304 -8 530 233 108 124 chr3 18124903 18125007 -199912151 + HAL1 LINE L1 724 828 -1679 927 109 0 8 chr3 18125019 18125147 -199912011 + FLAM_C SINE Alu 2 128 -5 490 154 39 0 chr3 18125176 18125280 -199911878 + (TATG)n Simple_repeat Simple_repeat 1 108 0 228 159 0 0 chr3 18125280 18125324 -199911834 - LTR66 LTR ERVL -172 438 395 234 174 0 0 chr3 18125325 18125371 -199911787 + (CA)n Simple_repeat Simple_repeat 2 47 0 2081 141 0 7 chr3 18126156 18126462 -199910696 + AluSx SINE Alu 1 304 -8 206 261 196 22 chr3 18126514 18126606 -199910552 + MIR3 SINE MIR 11 118 -90 205 340 0 29 chr3 18126674 18126777 -199910381 + MIR SINE MIR 104 203 -59 192 306 100 44 chr3 18126934 18127114 -199910044 - L2 LINE L2 -265 3007 2818 2256 90 10 0 chr3 18127898 18128187 -199908971 - AluSx SINE Alu -20 292 1 466 311 44 22 chr3 18129206 18129389 -199907769 + MIR SINE MIR 75 261 -1 220 329 54 47 chr3 18129841 18129990 -199907168 + L2 LINE L2 2598 2747 -567 1969 143 3 7 chr3 18130067 18130368 -199906790 - AluSx SINE Alu -12 300 1 1575 127 88 60 chr3 18130522 18130806 -199906352 + AluSx SINE Alu 3 294 -18 1290 115 5 30 chr3 18130883 18131083 -199906075 - AluSq SINE Alu 0 313 119 2363 82 23 0 chr3 18131332 18131638 -199905520 - AluSp SINE Alu 0 313 1 458 283 142 32 chr3 18131916 18131972 -199905186 + MIR SINE MIR 20 68 -194 2034 125 14 0 chr3 18131972 18132288 -199904870 - AluSq SINE Alu 0 320 1 458 283 142 32 chr3 18132288 18132449 -199904709 + MIR SINE MIR 68 262 0 2759 200 71 20 chr3 18132513 18132558 -199904600 + L1MB4 LINE L1 4404 4445 -1701 1665 193 0 0 chr3 18132558 18132866 -199904292 + AluJb SINE Alu 8 315 0 2759 200 71 20 chr3 18132866 18133518 -199903640 + L1MB4 LINE L1 4445 5139 -1007 2090 124 0 7 chr3 18134195 18134517 -199902641 + AluSx SINE Alu 1 320 0 1271 145 53 42 chr3 18135082 18135112 -199902046 + L1MB4 LINE L1 5106 5134 -1046 2334 106 0 0 chr3 18135112 18135413 -199901745 + AluSc SINE Alu 1 301 -8 1271 145 53 42 chr3 18135413 18135603 -199901555 + L1MB4 LINE L1 5134 5330 -850 1895 173 0 3 chr3 18135603 18135909 -199901249 + AluSx SINE Alu 1 305 -7 1271 145 53 42 chr3 18135909 18136056 -199901102 + L1MB4 LINE L1 5330 5474 -706 1081 129 0 12 chr3 18136057 18136220 -199900938 + FRAM SINE Alu 1 153 -23 43 35 0 0 chr3 18136220 18136277 -199900881 + AT_rich Low_complexity Low_complexity 1 57 0 3904 157 16 25 chr3 18136277 18136595 -199900563 + L1MB4 LINE L1 5478 5798 -382 2107 98 22 0 chr3 18136595 18136909 -199900249 + AluSx SINE Alu 1 320 0 3904 157 16 25 chr3 18136909 18137298 -199899860 + L1MB4 LINE L1 5798 6179 -1 258 292 0 22 chr3 18137298 18137387 -199899771 + L1MC/D LINE L1 5811 5897 -1911 23 0 0 0 chr3 18137579 18137602 -199899556 + AT_rich Low_complexity Low_complexity 1 23 0 1783 147 4 4 chr3 18137751 18138070 -199899088 - AluJb SINE Alu 0 312 23 211 182 91 0 chr3 18138272 18138316 -199898842 + L2 LINE L2 3221 3268 -4 1110 129 99 0 chr3 18138435 18138606 -199898552 + AluSg/x SINE Alu 116 303 -7 2200 103 10 3 chr3 18138606 18138907 -199898251 + AluY SINE Alu 1 303 -8 284 191 168 53 chr3 18139548 18139679 -199897479 + MIR SINE MIR 75 220 -42 601 339 150 28 chr3 18139690 18140969 -199896189 + L2 LINE L2 1630 3084 -188 25 0 0 0 chr3 18141967 18141992 -199895166 + AT_rich Low_complexity Low_complexity 1 25 0 2295 74 0 3 chr3 18142159 18142469 -199894689 + AluSq SINE Alu 1 309 0 205 244 0 0 chr3 18142575 18142616 -199894542 - MIR SINE MIR -138 70 30 510 276 92 54 chr3 18143820 18144081 -199893077 + L3 LINE CR1 625 895 -682 1944 125 0 49 chr3 18144640 18144968 -199892190 + AluSx SINE Alu 1 312 0 2210 122 46 24 chr3 18144979 18145308 -199891850 + MER1B DNA MER1_type 2 337 0 819 167 21 7 chr3 18145389 18145533 -199891625 + FRAM SINE Alu 1 146 -30 1742 183 0 31 chr3 18145806 18145941 -199891217 + AluJo SINE Alu 1 139 -173 1959 132 38 0 chr3 18145941 18146228 -199890930 + AluSq SINE Alu 1 298 -15 1742 183 0 31 chr3 18146228 18146414 -199890744 + AluJo SINE Alu 139 312 0 274 98 24 0 chr3 18146417 18146458 -199890700 + LTR56 LTR ERV1 347 388 -57 37322 90 7 8 chr3 18146516 18151648 -199885510 + L1P LINE L1 11 5138 -1008 228 97 0 0 chr3 18151750 18151781 -199885377 - Alu SINE Alu -269 32 2 2255 112 3 3 chr3 18151826 18152129 -199885029 + AluSq SINE Alu 1 303 -10 1270 295 57 45 chr3 18152480 18152559 -199884599 - LTR67 LTR ERVL -7 550 473 2062 132 7 0 chr3 18152559 18152855 -199884303 + AluSx SINE Alu 1 298 -14 1270 295 57 45 chr3 18152855 18153284 -199883874 - LTR67 LTR ERVL -84 473 36 1896 138 13 30 chr3 18153296 18153601 -199883557 + AluJo SINE Alu 2 301 -11 2099 220 36 13 chr3 18153614 18154083 -199883075 + L1MD2 LINE L1 5669 6148 -211 3105 162 147 5 chr3 18154153 18154726 -199882432 + MER44D DNA MER2_type 71 596 -9 974 164 61 119 chr3 18154728 18154951 -199882207 + MLT1A1 LTR MaLR 46 250 -115 2426 80 7 0 chr3 18154951 18155252 -199881906 - AluSg SINE Alu -7 303 1 974 164 61 119 chr3 18155252 18155321 -199881837 + MLT1A1 LTR MaLR 250 321 -44 317 137 20 0 chr3 18155326 18155377 -199881781 + Alu SINE Alu 1 52 -250 234 196 0 0 chr3 18155477 18155523 -199881635 - L1MC4 LINE L1 -1339 6703 6658 252 0 0 0 chr3 18155523 18155551 -199881607 + (CA)n Simple_repeat Simple_repeat 2 29 0 947 205 0 0 chr3 18155551 18155712 -199881446 + AluJo SINE Alu 125 285 -27 574 239 49 74 chr3 18155760 18156212 -199880946 + HAL1 LINE L1 853 1347 -1160 1737 177 13 10 chr3 18156212 18156522 -199880636 + AluJb SINE Alu 1 311 -1 574 239 49 74 chr3 18156522 18156557 -199880601 + HAL1 LINE L1 1347 1381 -1126 2048 239 75 76 chr3 18156574 18157505 -199879653 + HAL1 LINE L1 1561 2490 -17 1802 145 3 39 chr3 18158013 18158323 -199878835 + AluJb SINE Alu 1 299 -13 627 153 127 0 chr3 18159785 18159903 -199877255 + MER94 DNA DNA 1 133 -1 2465 63 0 7 chr3 18160146 18160445 -199876713 + AluY SINE Alu 1 297 -14 299 321 0 0 chr3 18160615 18160699 -199876459 + L1ME LINE L1 5491 5574 -547 454 310 44 0 chr3 18160778 18160936 -199876222 - MIR SINE MIR -10 252 88 277 270 93 2 chr3 18160936 18161053 -199876105 + L1ME LINE L1 5660 5786 -376 809 153 0 0 chr3 18161144 18161262 -199875896 + FLAM_C SINE Alu 1 118 -25 375 266 97 0 chr3 18161393 18161506 -199875652 - MIR SINE MIR -52 210 87 285 287 37 37 chr3 18162003 18162111 -199875047 + L2 LINE L2 3161 3268 -4 255 265 133 0 chr3 18162539 18162637 -199874521 + MIR SINE MIR 85 195 -67 3204 115 36 6 chr3 18162640 18163110 -199874048 - MER1A DNA MER1_type 0 529 46 240 242 48 16 chr3 18163298 18163360 -199873798 - L2 LINE L2 -5 3267 3204 1896 144 107 3 chr3 18163361 18163688 -199873470 + MER46B DNA MER2_type 1 236 0 727 220 10 25 chr3 18163815 18164015 -199873143 - L1MB8 LINE L1 -2 6176 5980 201 300 43 29 chr3 18164035 18164105 -199873053 - L2 LINE L2 -2 3270 3200 3407 156 46 50 chr3 18164112 18164785 -199872373 - L1MB8 LINE L1 -206 5972 5297 2363 99 0 3 chr3 18164785 18165087 -199872071 - AluSx SINE Alu -11 301 1 3407 156 46 50 chr3 18165087 18165176 -199871982 - L1MB8 LINE L1 -881 5297 5209 1159 125 0 28 chr3 18165184 18165360 -199871798 - AluSg/x SINE Alu -5 305 135 2105 128 3 3 chr3 18165360 18165658 -199871500 - AluSx SINE Alu -14 298 1 375 191 0 0 chr3 18165663 18165731 -199871427 - L1M4 LINE L1 -854 5292 5225 1239 123 0 0 chr3 18165731 18165902 -199871256 - AluSx SINE Alu -21 289 119 606 127 0 0 chr3 18165902 18165981 -199871177 - AluSc SINE Alu -21 288 210 1112 118 0 0 chr3 18165981 18166125 -199871033 - AluSq/x SINE Alu -168 144 1 415 257 121 83 chr3 18166214 18166553 -199870605 - L2 LINE L2 -4 3309 2958 617 234 6 35 chr3 18166591 18166762 -199870396 + MIR SINE MIR 6 171 -91 605 82 21 41 chr3 18167320 18167417 -199869741 - FRAM SINE Alu -13 163 69 226 280 13 27 chr3 18167575 18167650 -199869508 + L1MC/D LINE L1 5681 5754 -2054 231 200 139 127 chr3 18167724 18167783 -199869375 - MIR SINE MIR 0 262 205 1909 143 17 0 chr3 18167783 18168084 -199869074 + AluJo SINE Alu 1 306 -6 231 200 139 127 chr3 18168084 18168189 -199868969 - MIR SINE MIR -57 205 96 660 241 47 31 chr3 18168258 18168449 -199868709 + MIR SINE MIR 48 241 -21 197 229 24 72 chr3 18168474 18168557 -199868601 + L2 LINE L2 2871 2949 -323 2030 132 19 16 chr3 18168823 18169134 -199868024 - AluSx SINE Alu 0 312 1 189 147 0 0 chr3 18169152 18169186 -199867972 + (A)n Simple_repeat Simple_repeat 1 34 0 29 0 0 0 chr3 18169201 18169230 -199867928 + AT_rich Low_complexity Low_complexity 1 29 0 789 152 9 119 chr3 18170620 18170700 -199866458 + L1MC4 LINE L1 7856 7943 -99 942 180 37 37 chr3 18170700 18170889 -199866269 + MER5A DNA MER1_type 1 189 0 789 152 9 119 chr3 18170889 18171018 -199866140 + L1MC4 LINE L1 7943 8042 0 24 0 0 0 chr3 18171691 18171715 -199865443 + AT_rich Low_complexity Low_complexity 1 24 0 271 267 111 11 chr3 18171879 18171969 -199865189 + MIR SINE MIR 7 105 -157 1404 168 53 76 chr3 18172123 18172427 -199864731 + AluJb SINE Alu 1 297 -15 424 278 117 0 chr3 18172479 18172631 -199864527 + MIR SINE MIR 38 214 -48 704 264 86 0 chr3 18172688 18172862 -199864296 - MER5A DNA MER1_type 0 189 1 270 250 156 0 chr3 18172867 18172931 -199864227 - L1ME LINE L1 -552 5612 5539 908 246 57 36 chr3 18173739 18174073 -199863085 - MER2 DNA MER2_type -1 343 3 271 315 62 15 chr3 18174106 18174236 -199862922 - MIR SINE MIR -56 152 17 198 214 0 24 chr3 18175271 18175313 -199861845 - MIR SINE MIR -136 72 32 603 100 45 27 chr3 18175379 18175489 -199861669 + L1MB8 LINE L1 6067 6178 0 1794 169 23 10 chr3 18175491 18175792 -199861366 + AluJb SINE Alu 1 305 -7 2139 104 3 7 chr3 18176231 18176518 -199860640 - AluSx SINE Alu -26 286 1 181 250 0 0 chr3 18177287 18177327 -199859831 - L2 LINE L2 -11 3261 3222 264 300 50 17 chr3 18177331 18177451 -199859707 - MIR SINE MIR -89 173 50 2015 131 20 23 chr3 18177515 18177821 -199859337 - AluSx SINE Alu -7 305 1 309 356 52 30 chr3 18177850 18177985 -199859173 - MIR3 SINE MIR -61 147 10 2230 117 0 0 chr3 18177994 18178294 -199858864 - AluSx SINE Alu -12 300 1 475 214 58 0 chr3 18178483 18178586 -199858572 - L1ME3 LINE L1 -1 6161 6053 2416 209 82 43 chr3 18179458 18179742 -199857416 - MER21B LTR ERV1 -60 803 532 1960 140 0 13 chr3 18179742 18180049 -199857109 - AluSx SINE Alu -9 303 1 2416 209 82 43 chr3 18180049 18180443 -199856715 - MER21B LTR ERV1 -331 532 98 2197 180 39 142 chr3 18181082 18181768 -199855390 + LTR8A LTR ERV1 34 633 -94 2167 120 0 7 chr3 18181768 18182067 -199855091 - AluSx SINE Alu -15 297 1 2197 180 39 142 chr3 18182067 18182154 -199855004 + LTR8A LTR ERV1 633 727 0 260 200 123 0 chr3 18182220 18182285 -199854873 + MER5C DNA MER1_type 247 319 -5 * 351 285 62 42 chr3 18182283 18182427 -199854731 - MIR3 SINE MIR -41 167 21 2170 145 0 0 chr3 18182606 18182910 -199854248 - AluJb SINE Alu -6 306 3 381 246 167 9 chr3 18183327 18183441 -199853717 + MIR SINE MIR 16 147 -61 312 229 12 24 chr3 18183494 18183577 -199853581 - MER117 DNA MER1_type -55 142 61 311 209 3 171 chr3 18183589 18183652 -199853506 + MER5A DNA MER1_type 10 82 -96 2229 66 7 24 chr3 18183652 18183941 -199853217 + AluSq SINE Alu 17 300 -13 311 209 3 171 chr3 18183941 18183955 -199853203 + MER5A DNA MER1_type 82 97 -81 1840 151 45 3 chr3 18183955 18184246 -199852912 + AluJb SINE Alu 5 307 -5 311 209 3 171 chr3 18184246 18184312 -199852846 + MER5A DNA MER1_type 97 116 -62 751 207 17 35 chr3 18184779 18184953 -199852205 + MER5A DNA MER1_type 18 188 -1 2131 81 74 0 chr3 18184983 18185266 -199851892 + AluSq SINE Alu 1 304 -9 682 223 101 45 chr3 18185916 18186163 -199850995 - MIR SINE MIR 0 262 2 785 193 0 30 chr3 18187558 18187724 -199849434 + MER5B DNA MER1_type 3 163 -15 491 244 35 0 chr3 18188677 18188792 -199848366 - L1MB5 LINE L1 0 6174 6056 290 295 74 8 chr3 18189297 18189419 -199847739 - MIR SINE MIR -61 147 18 533 256 46 72 chr3 18189930 18189992 -199847166 - MIR SINE MIR 0 262 200 1571 118 184 8 chr3 18189992 18190247 -199846911 - AluSg1 SINE Alu -7 302 3 533 256 46 72 chr3 18190247 18190446 -199846712 - MIR SINE MIR -62 200 8 334 257 97 38 chr3 18190863 18191100 -199846058 - L1ME4a LINE L1 -104 6017 5767 200 61 61 0 chr3 18191132 18191165 -199845993 + CT-rich Low_complexity Low_complexity 2 36 0 2227 92 0 3 chr3 18191167 18191459 -199845699 - AluSx SINE Alu -3 309 19 642 267 143 5 chr3 18191466 18191676 -199845482 - L1ME4a LINE L1 -2037 5771 5533 263 28 28 0 chr3 18192487 18192523 -199844635 + (TTTTC)n Simple_repeat Simple_repeat 4 40 0 2080 147 3 6 chr3 18192526 18192839 -199844319 - AluJb SINE Alu 0 312 1 794 241 30 5 chr3 18192890 18193093 -199844065 + MIR SINE MIR 43 250 -12 327 348 43 7 chr3 18193188 18193329 -199843829 - MIR SINE MIR -50 212 67 216 315 55 14 chr3 18193579 18193652 -199843506 + L2 LINE L2 3159 3234 -38 248 313 15 0 chr3 18193792 18193859 -199843299 - L2 LINE L2 -219 3053 2986 572 264 74 0 chr3 18194047 18194210 -199842948 + MIR SINE MIR 21 195 -67 564 246 15 0 chr3 18194482 18194616 -199842542 + MER103 DNA DNA 11 146 -20 2499 108 113 17 chr3 18195027 18195436 -199841722 + MER83 LTR ERV1 1 448 0 6897 133 12 22 chr3 18195445 18195577 -199841581 - LTR49-int LTR ERV1 -1033 5298 5166 1589 179 20 13 chr3 18195577 18195878 -199841280 - AluJo SINE Alu -9 303 1 6897 133 12 22 chr3 18195878 18196762 -199840396 - LTR49-int LTR ERV1 -1165 5166 4292 2015 125 50 0 chr3 18196762 18197059 -199840099 - AluSx SINE Alu 0 312 1 6897 133 12 22 chr3 18197059 18197192 -199839966 - LTR49-int LTR ERV1 -2039 4292 4159 1259 238 143 46 chr3 18197259 18197671 -199839487 + MER21B LTR ERV1 330 781 -82 3277 214 32 61 chr3 18197764 18198210 -199838948 - L1ME1 LINE L1 -25 6421 5964 1946 105 27 90 chr3 18198210 18198543 -199838615 - AluSx SINE Alu 0 312 1 2304 107 10 0 chr3 18198549 18198849 -199838309 - AluSg SINE Alu -7 303 1 3277 214 32 61 chr3 18198849 18199924 -199837234 - L1ME1 LINE L1 -487 5959 4931 757 189 0 0 chr3 18199950 18200082 -199837076 - FRAM SINE Alu -5 171 40 538 229 6 45 chr3 18200106 18200285 -199836873 - L1ME1 LINE L1 -1499 4927 4756 * 542 227 13 47 chr3 18200272 18200422 -199836736 - L1ME1 LINE L1 -4813 1613 1469 276 183 9 104 chr3 18200429 18200544 -199836614 - L1ME1 LINE L1 -5069 1357 1254 369 62 0 0 chr3 18200572 18200620 -199836538 + (CA)n Simple_repeat Simple_repeat 1 48 0 30 69 0 0 chr3 18200659 18200717 -199836441 + AT_rich Low_complexity Low_complexity 1 58 0 419 221 88 51 chr3 18200721 18200898 -199836260 + L1ME1 LINE L1 5907 6161 -5 1651 124 0 70 chr3 18200940 18201213 -199835945 + AluSx SINE Alu 1 254 -58 365 103 5 23 chr3 18202560 18202773 -199834385 + AluSx SINE Alu 1 293 -8 202 234 0 0 chr3 18203203 18203250 -199833908 + T-rich Low_complexity Low_complexity 1 47 0 7344 47 8 0 chr3 18203516 18204978 -199832180 - L1PA6 LINE L1 -1 6153 4689 1161 124 96 0 chr3 18205174 18205352 -199831806 + AluSg/x SINE Alu 118 312 0 2021 122 10 3 chr3 18205356 18205652 -199831506 + AluY SINE Alu 1 298 -13 246 191 168 53 chr3 18206292 18206423 -199830735 + MIR SINE MIR 75 220 -42 285 342 151 25 chr3 18206434 18207696 -199829462 + L2 LINE L2 1630 3069 -203 25 0 0 0 chr3 18208713 18208738 -199828420 + AT_rich Low_complexity Low_complexity 1 25 0 373 132 0 5 chr3 18208903 18208963 -199828195 + Alu SINE Alu 2 52 -247 1979 122 0 49 chr3 18209425 18209753 -199827405 + AluSx SINE Alu 1 312 0 2069 125 46 24 chr3 18209764 18210093 -199827065 + MER1B DNA MER1_type 2 337 0 782 160 21 7 chr3 18210174 18210318 -199826840 + FRAM SINE Alu 1 146 -30 1748 183 0 31 chr3 18210591 18210726 -199826432 + AluJo SINE Alu 1 139 -173 1955 136 38 0 chr3 18210726 18211013 -199826145 + AluSq SINE Alu 1 298 -15 1748 183 0 31 chr3 18211013 18211199 -199825959 + AluJo SINE Alu 139 312 0 275 98 24 0 chr3 18211202 18211243 -199825915 + LTR56 LTR ERV1 347 388 -57 33153 93 7 8 chr3 18211301 18215906 -199821252 + L1P LINE L1 11 4612 -1534 17783 67 5 12 chr3 18216028 18218419 -199818739 + L1P3 LINE L1 1504 3868 -2593 995 208 12 8 chr3 18218533 18218774 -199818384 - L1MC1 LINE L1 -103 6230 5989 961 265 23 10 chr3 18218797 18219099 -199818059 - L1MD3 LINE L1 -18 7977 7672 1285 193 98 28 chr3 18221102 18221387 -199815771 + AluJo SINE Alu 1 305 -7 203 335 30 0 chr3 18222825 18222989 -199814169 + (CA)n Simple_repeat Simple_repeat 1 169 0 1003 201 54 0 chr3 18223172 18223376 -199813782 - MER58A DNA MER1_type 0 224 10 2646 222 30 39 chr3 18223421 18224123 -199813035 - L1MB7 LINE L1 0 6184 5489 531 234 0 14 chr3 18224764 18224905 -199812253 - MIR SINE MIR -115 147 9 187 294 111 33 chr3 18225082 18225235 -199811923 + L2 LINE L2 2898 3062 -210 511 221 0 0 chr3 18229274 18229387 -199807771 - L1MA7 LINE L1 -6 6285 6173 825 240 39 27 chr3 18229387 18229645 -199807513 + L1MA7 LINE L1 5895 6155 -136 218 292 0 45 chr3 18231432 18231521 -199805637 - MIR SINE MIR -113 149 65 253 242 15 0 chr3 18231648 18231714 -199805444 + L2 LINE L2 3205 3271 -1 1912 91 0 4 chr3 18232503 18232745 -199804413 + AluSx SINE Alu 58 298 -14 7443 127 48 31 chr3 18232745 18235014 -199802144 + L1MA3 LINE L1 3782 6077 -228 2240 121 3 0 chr3 18235014 18235311 -199801847 - AluSx SINE Alu -14 298 1 7443 127 48 31 chr3 18235311 18235518 -199801640 + L1MA3 LINE L1 6077 6279 -26 2182 125 0 3 chr3 18235518 18235821 -199801337 - AluSx SINE Alu -5 307 6 2268 93 0 59 chr3 18235990 18236314 -199800844 - AluY SINE Alu -5 306 2 574 260 41 7 chr3 18237391 18237537 -199799621 - MIR SINE MIR -108 154 4 13581 56 4 12 chr3 18237616 18240251 -199796907 - L1PA5 LINE L1 -2 6152 3532 19702 74 4 23 chr3 18240251 18243121 -199794037 + L1PA5 LINE L1 737 3553 -2593 1045 203 12 8 chr3 18243235 18243476 -199793682 - L1MC1 LINE L1 -103 6230 5989 970 265 23 10 chr3 18243499 18243801 -199793357 - L1MD3 LINE L1 -18 7977 7672 1380 190 99 25 chr3 18245804 18246088 -199791070 + AluJo SINE Alu 1 305 -7 203 335 30 0 chr3 18247526 18247690 -199789468 + (CA)n Simple_repeat Simple_repeat 1 169 0 974 201 54 0 chr3 18247974 18248178 -199788980 - MER58A DNA MER1_type 0 224 10 2620 222 30 39 chr3 18248223 18248925 -199788233 - L1MB7 LINE L1 0 6184 5489 590 227 0 14 chr3 18249566 18249707 -199787451 - MIR SINE MIR -115 147 9 511 221 0 0 chr3 18252290 18252403 -199784755 - L1MA7 LINE L1 -6 6285 6173 825 240 39 27 chr3 18252403 18252661 -199784497 + L1MA7 LINE L1 5895 6155 -136 218 292 0 45 chr3 18254449 18254538 -199782620 - MIR SINE MIR -113 149 65 241 231 31 0 chr3 18254665 18254730 -199782428 + L2 LINE L2 3205 3271 -1 541 204 0 0 chr3 18257411 18257524 -199779634 - L1MA7 LINE L1 -6 6285 6173 756 251 35 27 chr3 18257524 18257783 -199779375 + L1MA7 LINE L1 5895 6155 -136 226 282 0 47 chr3 18258606 18258691 -199778467 - MIR SINE MIR -117 145 65 748 303 138 23 chr3 18260322 18261044 -199776114 - L2 LINE L2 0 3313 2503 2012 143 78 104 chr3 18261214 18261725 -199775433 + LTR8A LTR ERV1 230 727 0 5501 53 33 116 chr3 18261747 18262647 -199774511 + LTR12 LTR ERV1 1 826 0 398 264 107 6 chr3 18263418 18263596 -199773562 + L1MC4a LINE L1 5706 5901 -1907 2397 105 3 0 chr3 18263633 18263937 -199773221 - AluSp SINE Alu -8 305 1 3956 236 49 24 chr3 18264073 18264854 -199772304 - L1MCb LINE L1 -4851 1194 580 2192 107 21 0 chr3 18264854 18265145 -199772013 - AluY SINE Alu -12 299 3 3956 236 49 24 chr3 18265145 18265735 -199771423 - L1MCb LINE L1 -5465 580 7 814 233 8 25 chr3 18265759 18265999 -199771159 - L1M4 LINE L1 -1676 4470 4235 1955 150 27 0 chr3 18266013 18266307 -199770851 - AluJo SINE Alu -2 310 9 389 183 39 12 chr3 18266333 18266419 -199770739 + AluS SINE Alu 1 74 -228 457 160 13 0 chr3 18266534 18266609 -199770549 - AluJ/FLAM SINE Alu -234 78 3 1245 216 61 42 chr3 18266616 18266643 -199770515 - L1M4 LINE L1 -1907 4239 4214 1625 183 63 3 chr3 18266643 18266927 -199770231 + AluJo SINE Alu 1 301 -11 1245 216 61 42 chr3 18266927 18267260 -199769898 - L1M4 LINE L1 -1932 4214 3872 751 240 34 2 chr3 18267247 18267479 -199769679 - L1PBa LINE L1 -4216 2325 1849 * 321 284 11 11 chr3 18267849 18267944 -199769214 - MLT1K LTR MaLR -337 251 157 450 320 102 15 chr3 18268141 18268497 -199768661 + MLT1J2 LTR MaLR 20 409 0 666 225 67 11 chr3 18268503 18268681 -199768477 + MER5A DNA MER1_type 1 188 -1 290 74 0 19 chr3 18269437 18269491 -199767667 - L1MB4 LINE L1 0 6180 6128 24 22 0 43 chr3 18269491 18269507 -199767651 + AT_rich Low_complexity Low_complexity 1 16 -28 1377 146 163 0 chr3 18269507 18269753 -199767405 + AluJo SINE Alu 2 287 -15 24 22 0 43 chr3 18269753 18269782 -199767376 + AT_rich Low_complexity Low_complexity 16 44 0 816 250 62 5 chr3 18269823 18270031 -199767127 - AluJo SINE Alu -92 220 1 3271 148 17 9 chr3 18270031 18270687 -199766471 - L1MB3 LINE L1 -41 6142 5397 1476 207 16 0 chr3 18270689 18271118 -199766040 - L1MB3 LINE L1 -1085 5061 4560 240 250 6 68 chr3 18271363 18271514 -199765644 + GA-rich Low_complexity Low_complexity 2 142 -24 2012 136 79 20 chr3 18271514 18271919 -199765239 - MSTB1 LTR MaLR -3 429 1 240 250 6 68 chr3 18271919 18271943 -199765215 + GA-rich Low_complexity Low_complexity 142 166 0 1163 266 40 31 chr3 18272067 18272645 -199764513 - HERV16 LTR ERVL -3027 1969 1369 2123 143 0 0 chr3 18272645 18272939 -199764219 - AluSx SINE Alu -18 294 1 1163 266 40 31 chr3 18272939 18273119 -199764039 - HERV16 LTR ERVL -3627 1369 1192 743 201 31 122 chr3 18273119 18273373 -199763785 + MLT2B1 LTR ERVL 290 520 0 2071 255 112 36 chr3 18273376 18273814 -199763344 - HERV16 LTR ERVL -3829 1167 764 2293 104 16 0 chr3 18273814 18274122 -199763036 - AluSq SINE Alu 0 313 1 2071 255 112 36 chr3 18274122 18274503 -199762655 - HERV16 LTR ERVL -4232 764 280 1303 187 149 31 chr3 18274503 18274920 -199762238 + MLT1C LTR MaLR 1 466 -1 2071 255 112 36 chr3 18274920 18274937 -199762221 - HERV16 LTR ERVL -4716 280 266 2293 106 0 0 chr3 18274938 18275230 -199761928 - AluSg SINE Alu -18 292 1 316 261 92 92 chr3 18275273 18275439 -199761719 - MIR SINE MIR -28 234 66 1942 165 0 10 chr3 18275439 18275742 -199761416 + AluJb SINE Alu 12 311 -1 316 261 92 92 chr3 18275742 18275782 -199761376 - MIR SINE MIR -195 67 28 6196 42 5 0 chr3 18275798 18276541 -199760617 + L1PA4 LINE L1 5406 6152 -3 267 103 0 0 chr3 18276567 18276606 -199760552 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 356 297 94 0 chr3 18276999 18277127 -199760031 - L1ME4a LINE L1 -21 6100 5961 23 33 0 0 chr3 18277149 18277179 -199759979 + AT_rich Low_complexity Low_complexity 1 30 0 307 143 95 24 chr3 18277260 18277344 -199759814 - L1ME4a LINE L1 -1 6120 6031 2224 163 70 2 chr3 18277355 18277754 -199759404 - MSTB LTR MaLR 0 426 1 25 51 0 0 chr3 18277792 18277831 -199759327 + AT_rich Low_complexity Low_complexity 1 39 0 1921 144 7 7 chr3 18277833 18278132 -199759026 - AluJb SINE Alu -13 299 1 253 331 31 39 chr3 18278168 18278298 -199758860 + MIR SINE MIR 28 156 -106 180 374 22 0 chr3 18278277 18278368 -199758790 + L2 LINE L2 3168 3260 -12 * 2063 136 0 34 chr3 18278465 18278644 -199758514 - AluJb SINE Alu 0 312 147 2081 142 3 0 chr3 18278644 18278947 -199758211 - AluSx SINE Alu -8 304 1 2063 136 0 34 chr3 18278947 18279090 -199758068 - AluJb SINE Alu -165 147 1 394 197 0 0 chr3 18279218 18279289 -199757869 - MER5A DNA MER1_type -117 72 2 215 254 197 28 chr3 18280149 18280291 -199756867 - MIR SINE MIR -14 248 83 1652 143 0 22 chr3 18280346 18280619 -199756539 - AluJo SINE Alu -3 309 43 310 238 115 16 chr3 18280820 18280942 -199756216 + MIR SINE MIR 74 207 -55 1763 174 13 25 chr3 18281035 18281351 -199755807 - AluJb SINE Alu 0 312 1 408 254 73 55 chr3 18281562 18281727 -199755431 - MIR SINE MIR -55 207 40 1025 170 111 73 chr3 18281915 18282203 -199754955 - L1ME1 LINE L1 -3 6163 5865 2430 76 7 3 chr3 18282576 18282878 -199754280 + AluSp SINE Alu 1 303 -10 313 210 0 0 chr3 18283126 18283188 -199753970 + MER91B DNA MER1_type 2 63 -127 820 302 86 29 chr3 18283334 18284102 -199753056 - L2 LINE L2 -219 3053 2252 222 319 14 0 chr3 18284346 18284418 -199752740 + L2 LINE L2 3191 3263 -9 258 286 41 51 chr3 18284448 18284546 -199752612 - MARNA DNA Mariner -14 572 476 422 339 59 4 chr3 18284606 18284860 -199752298 + L1ME LINE L1 5122 5389 -757 2038 146 0 0 chr3 18284874 18285168 -199751990 + AluSx SINE Alu 5 298 -14 1584 166 42 7 chr3 18285280 18285563 -199751595 - AluJb SINE Alu -19 293 1 475 238 20 14 chr3 18285577 18285724 -199751434 + L1ME LINE L1 5593 5740 -381 424 268 109 46 chr3 18285891 18286130 -199751028 + MARNA DNA Mariner 135 388 -198 491 257 59 0 chr3 18288378 18288514 -199748644 - MER63C DNA MER1_type -600 330 187 2272 113 6 3 chr3 18288514 18288825 -199748333 - AluSp SINE Alu -1 312 1 5589 125 4 2 chr3 18288831 18289654 -199747504 - L1PA15 LINE L1 0 6165 5342 424 306 63 27 chr3 18289654 18289876 -199747282 + MIR SINE MIR 21 250 -12 269 253 149 40 chr3 18290191 18290365 -199746793 + MER117 DNA MER1_type 1 193 -4 692 181 88 76 chr3 18290378 18290487 -199746671 + MER5C DNA MER1_type 2 108 -216 7570 29 0 0 chr3 18290487 18291613 -199745545 - L1PA5 LINE L1 -4 6150 5020 692 181 88 76 chr3 18291613 18291752 -199745406 + MER5C DNA MER1_type 108 253 -71 180 0 0 0 chr3 18292745 18292765 -199744393 + (TGGGGG)n Simple_repeat Simple_repeat 3 22 0 332 344 7 19 chr3 18292877 18293031 -199744127 - MIR3 SINE MIR -24 184 33 278 219 55 0 chr3 18293602 18293675 -199743483 + MLT1L LTR MaLR 1 77 -538 245 246 14 14 chr3 18293790 18293859 -199743299 + MLT1J LTR MaLR 229 297 -214 2235 250 114 27 chr3 18294113 18295036 -199742122 + L1ME3A LINE L1 4146 4987 -1183 1073 172 22 44 chr3 18295036 18295263 -199741895 + L1MB8 LINE L1 5957 6178 0 2235 250 114 27 chr3 18295263 18295984 -199741174 + L1ME3A LINE L1 4987 5945 -225 807 159 22 7 chr3 18296018 18296156 -199741002 + FRAM SINE Alu 13 152 -24 659 203 68 21 chr3 18296161 18296353 -199740805 + L1ME3A LINE L1 5965 6165 -5 953 261 17 0 chr3 18296371 18296609 -199740549 + MIR SINE MIR 21 262 0 2249 127 3 0 chr3 18296759 18297075 -199740083 - 7SLRNA srpRNA srpRNA -3 317 1 427 251 89 45 chr3 18298178 18298357 -199738801 + MIR SINE MIR 49 235 -27 2178 84 22 0 chr3 18298903 18299201 -199737957 - AluSc SINE Alu 0 304 1 565 211 113 0 chr3 18299387 18299529 -199737629 + MER5B DNA MER1_type 1 158 -20 393 228 0 0 chr3 18299579 18299671 -199737487 + MER5A DNA MER1_type 15 106 -83 181 267 0 0 chr3 18299724 18299769 -199737389 + MIR SINE MIR 117 161 -101 * 340 249 28 57 chr3 18299760 18299937 -199737221 + MER5A DNA MER1_type 18 189 0 406 284 157 0 chr3 18300067 18300201 -199736957 - MIR SINE MIR -95 167 13 586 262 36 86 chr3 18300318 18300654 -199736504 - L2 LINE L2 -5 3267 2949 2240 140 85 18 chr3 18300868 18301269 -199735889 + MSTA LTR MaLR 1 428 0 213 132 0 0 chr3 18301418 18301456 -199735702 + (TCCA)n Simple_repeat Simple_repeat 4 41 0 255 264 0 55 chr3 18301622 18301713 -199735445 - MLT1I LTR MaLR -1 408 323 2411 158 29 7 chr3 18301737 18302193 -199734965 - L1MB7 LINE L1 -10 6174 5709 433 261 82 39 chr3 18302313 18302520 -199734638 - MLT1J2 LTR MaLR -215 235 20 1809 167 3 7 chr3 18302790 18303095 -199734063 + AluJb SINE Alu 1 304 -8 21 57 0 0 chr3 18303279 18303314 -199733844 + AT_rich Low_complexity Low_complexity 1 35 0 765 193 0 0 chr3 18303315 18303434 -199733724 - FLAM_A SINE Alu -14 119 1 679 269 148 40 chr3 18303474 18303853 -199733305 + MLT1J LTR MaLR 14 433 -78 183 341 24 12 chr3 18304098 18304183 -199732975 + MIR SINE MIR 12 97 -165 669 182 97 0 chr3 18304242 18304407 -199732751 - MIR SINE MIR -31 231 51 335 374 26 5 chr3 18304671 18304866 -199732292 - MIR SINE MIR -17 245 47 221 291 87 0 chr3 18305175 18305278 -199731880 + MIR SINE MIR 36 147 -61 753 193 6 88 chr3 18305402 18305583 -199731575 + FRAM SINE Alu 1 158 -18 1683 189 10 7 chr3 18305607 18305908 -199731250 + AluJo SINE Alu 5 306 -6 541 240 194 34 chr3 18306000 18306325 -199730833 + MLT1J LTR MaLR 110 486 -25 180 0 0 0 chr3 18307402 18307422 -199729736 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 2047 108 17 7 chr3 18307422 18307705 -199729453 - AluJb SINE Alu -26 286 1 1174 170 67 13 chr3 18308012 18308236 -199728922 - MER46A DNA MER2_type 0 236 1 336 294 16 8 chr3 18308382 18308508 -199728650 - L1ME LINE L1 -302 5819 5693 489 278 182 12 chr3 18308539 18308837 -199728321 - MLT1L LTR MaLR -19 544 142 2219 91 3 41 chr3 18308859 18309177 -199727981 - AluSx SINE Alu -6 306 1 244 359 119 6 chr3 18309584 18309743 -199727415 + MIR SINE MIR 34 210 -52 1904 165 6 19 chr3 18309812 18310128 -199727030 - AluJo SINE Alu 0 312 1 390 293 99 31 chr3 18310181 18310372 -199726786 + MER63A DNA MER1_type 3 206 -4 925 291 53 18 chr3 18310417 18310585 -199726573 - MLT1K LTR MaLR -72 516 355 2067 127 0 29 chr3 18310585 18310901 -199726257 - AluSx SINE Alu -5 307 1 925 291 53 18 chr3 18310901 18311148 -199726010 - MLT1K LTR MaLR -233 355 36 2671 176 52 2 chr3 18311148 18311603 -199725555 + MLT2B1 LTR ERVL 1 484 -36 491 31 15 0 chr3 18311603 18311668 -199725490 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 2671 176 52 2 chr3 18311668 18311707 -199725451 + MLT2B1 LTR ERVL 484 520 0 305 317 150 6 chr3 18312099 18312266 -199724892 - MIR SINE MIR -16 246 56 2056 145 57 8 chr3 18312493 18312560 -199724598 + MLT1B LTR MaLR 1 63 -327 2498 74 0 0 chr3 18312560 18312857 -199724301 + AluSg SINE Alu 12 308 -2 2056 145 57 8 chr3 18312857 18313161 -199723997 + MLT1B LTR MaLR 63 390 0 862 115 0 43 chr3 18313199 18313338 -199723820 - FLAM_C SINE Alu 0 133 1 1188 200 0 0 chr3 18313358 18313597 -199723561 + AluJb SINE Alu 73 311 0 230 254 18 0 chr3 18313779 18313834 -199723324 - L1MC/D LINE L1 -1901 5907 5852 671 300 6 0 chr3 18314235 18314415 -199722743 - MIR3 SINE MIR -9 199 19 635 258 26 0 chr3 18314508 18314663 -199722495 + MIR SINE MIR 19 177 -85 298 281 9 88 chr3 18314678 18314792 -199722366 - MER91C DNA MER1_type -35 105 1 185 121 0 0 chr3 18314834 18314867 -199722291 + MIR SINE MIR 229 261 -1 400 246 113 0 chr3 18314967 18315109 -199722049 - L1ME4a LINE L1 -3 6118 5961 1549 128 120 8 chr3 18315166 18315424 -199721734 + AluJo SINE Alu 1 287 -25 865 263 38 0 chr3 18315466 18315679 -199721479 + MIR SINE MIR 8 228 -34 269 351 29 11 chr3 18315703 18315877 -199721281 - L1ME4a LINE L1 -2012 5796 5620 1571 213 32 52 chr3 18316090 18316532 -199720626 + MER113 DNA MER1_type? 1 433 -88 740 266 5 37 chr3 18316697 18316915 -199720243 - MIR SINE MIR -51 211 1 365 190 13 13 chr3 18317212 18317291 -199719867 - MIR SINE MIR -94 114 36 277 195 244 0 chr3 18317395 18317477 -199719681 - MIR SINE MIR -98 164 63 181 273 18 18 chr3 18317509 18317564 -199719594 - MIR SINE MIR -133 75 21 464 174 69 142 chr3 18317806 18318015 -199719143 - MLT1G1 LTR MaLR -5 525 288 * 639 250 17 56 chr3 18318010 18318131 -199719027 - MLT1G1 LTR MaLR -422 173 60 2023 133 10 0 chr3 18318131 18318432 -199718726 + AluSg SINE Alu 1 304 -6 639 250 17 56 chr3 18318432 18318490 -199718668 - MLT1G1 LTR MaLR -535 60 1 860 230 84 59 chr3 18319113 18319286 -199717872 - LTR16C LTR ERVL -93 398 212 2243 42 0 4 chr3 18319286 18319548 -199717610 + AluY SINE Alu 32 292 -19 860 230 84 59 chr3 18319548 18319696 -199717462 - LTR16C LTR ERVL -279 212 69 503 254 9 0 chr3 18319737 18319847 -199717311 + MER81 DNA DNA 4 114 0 814 106 0 53 chr3 18319937 18320069 -199717089 + L1MB7 LINE L1 6044 6168 -16 410 215 0 0 chr3 18320079 18320158 -199717000 + L1M4 LINE L1 4781 4859 -1287 663 236 32 25 chr3 18320173 18320330 -199716828 - MLT1D LTR MaLR -347 158 1 445 205 170 0 chr3 18320333 18320445 -199716713 - MIR SINE MIR -118 144 14 526 310 6 6 chr3 18320743 18320914 -199716244 + MIR SINE MIR 20 190 -72 506 270 31 13 chr3 18321341 18321500 -199715658 - MIR SINE MIR -11 251 90 1216 307 141 4 chr3 18321811 18322306 -199714852 - MLT1K LTR MaLR -2 586 24 437 302 58 23 chr3 18322627 18322799 -199714359 + MLT1J2 LTR MaLR 273 450 0 1966 94 68 0 chr3 18322812 18323115 -199714043 + AluSg SINE Alu 1 321 0 676 295 50 96 chr3 18323174 18323259 -199713899 - LTR67 LTR ERVL -2 555 468 1977 114 0 14 chr3 18323259 18323540 -199713618 + AluSx SINE Alu 27 303 -9 676 295 50 96 chr3 18323540 18323935 -199713223 - LTR67 LTR ERVL -89 468 97 265 156 16 16 chr3 18324242 18324306 -199712852 + MER5A DNA MER1_type 31 94 -95 517 272 146 13 chr3 18324322 18324480 -199712678 - MER5A DNA MER1_type -7 182 4 196 326 66 41 chr3 18324480 18324673 -199712485 - L2 LINE L2 -699 2615 2418 387 216 80 74 chr3 18325385 18325561 -199711597 - MIR SINE MIR -49 213 37 225 267 33 67 chr3 18326273 18326363 -199710795 + MIR SINE MIR 40 127 -81 249 139 0 0 chr3 18327644 18327687 -199709471 + (A)n Simple_repeat Simple_repeat 1 43 0 382 291 29 0 chr3 18327688 18327791 -199709367 + MIR SINE MIR 47 152 -56 671 272 59 28 chr3 18328081 18328324 -199708834 + MIR SINE MIR 18 262 0 236 319 14 0 chr3 18328448 18328517 -199708641 - L2 LINE L2 -16 3297 3228 1512 149 47 70 chr3 18328801 18329102 -199708056 - AluJo SINE Alu -1 311 18 252 312 128 32 chr3 18329191 18329316 -199707842 - L2 LINE L2 -2 3270 3134 1903 178 0 0 chr3 18329351 18329654 -199707504 - AluJo SINE Alu -9 303 1 514 213 74 111 chr3 18329825 18330069 -199707089 - MLT1K LTR MaLR 0 588 354 822 321 92 7 chr3 18330106 18330529 -199706629 + LTR16B LTR ERVL 1 459 -5 1310 275 45 19 chr3 18330536 18330700 -199706458 + LTR16B LTR ERVL 22 180 -284 818 186 8 0 chr3 18330700 18330824 -199706334 - FLAM_A SINE Alu -8 125 1 1310 275 45 19 chr3 18330824 18331085 -199706073 + LTR16B LTR ERVL 180 458 -6 1907 173 7 0 chr3 18331085 18331380 -199705778 + AluJb SINE Alu 1 297 -15 1826 175 13 0 chr3 18331680 18331988 -199705170 + AluJb SINE Alu 1 312 0 688 281 31 5 chr3 18333107 18333303 -199703855 - MIR SINE MIR -22 240 40 2058 140 17 70 chr3 18333663 18334082 -199703076 + MER57A LTR ERV1 7 372 -1 385 295 104 60 chr3 18334127 18335040 -199702118 - L1M4 LINE L1 -824 5322 4370 446 286 147 83 chr3 18335639 18335905 -199701253 - L2 LINE L2 -17 3255 2973 1344 275 43 18 chr3 18335921 18336258 -199700900 + LTR16C LTR ERVL 89 439 -52 16436 112 24 33 chr3 18336258 18338696 -199698462 - Tigger1 DNA MER2_type -1 2417 1 1344 275 43 18 chr3 18338696 18338751 -199698407 + LTR16C LTR ERVL 439 491 0 325 278 53 20 chr3 18338766 18338917 -199698241 - L2 LINE L2 -303 2969 2814 216 273 0 0 chr3 18339542 18339619 -199697539 + CT-rich Low_complexity Low_complexity 4 80 0 303 312 37 28 chr3 18339621 18339730 -199697428 - L2 LINE L2 -40 3232 3123 371 341 119 6 chr3 18339889 18340065 -199697093 - MIR SINE MIR -19 243 48 388 311 54 7 chr3 18340300 18340448 -199696710 + MIR SINE MIR 50 204 -58 353 295 54 0 chr3 18341145 18341274 -199695884 + MIR SINE MIR 125 260 -2 918 108 39 8 chr3 18341434 18341564 -199695594 - AluJb SINE Alu -16 296 163 191 275 110 55 chr3 18341569 18341678 -199695480 - MIR SINE MIR -116 146 32 376 307 119 11 chr3 18341743 18341919 -199695239 - MIR SINE MIR -34 228 34 372 319 148 14 chr3 18342659 18342869 -199694289 + MIR SINE MIR 25 262 0 342 246 0 88 chr3 18343135 18343249 -199693909 - MIR3 SINE MIR -35 173 70 343 284 64 46 chr3 18343514 18343661 -199693497 - MIR SINE MIR -67 141 32 269 366 69 0 chr3 18343971 18344072 -199693086 - MIR SINE MIR -85 123 16 191 288 108 81 chr3 18345156 18345267 -199691891 - L2 LINE L2 -23 3249 3136 210 342 26 0 chr3 18345329 18345405 -199691753 - L2 LINE L2 -33 3239 3162 2392 79 3 0 chr3 18345914 18346206 -199690952 + AluSp SINE Alu 1 293 -20 287 362 121 24 chr3 18346321 18346528 -199690630 - L2 LINE L2 -14 3258 3032 275 302 50 115 chr3 18346551 18346872 -199690286 + L2 LINE L2 2941 3240 -32 335 258 121 16 chr3 18347108 18347232 -199689926 - MIR SINE MIR -44 218 82 507 134 0 0 chr3 18347767 18347849 -199689309 + (TG)n Simple_repeat Simple_repeat 2 83 0 346 268 122 98 chr3 18348173 18348778 -199688380 + L1M2 LINE L1 468 1374 -5475 438 289 50 16 chr3 18350547 18350668 -199686490 - MIR SINE MIR -136 126 2 200 298 192 10 chr3 18352305 18352409 -199684749 - L2 LINE L2 -11 3261 3139 477 263 171 7 chr3 18352440 18352592 -199684566 + MER5A DNA MER1_type 12 188 -1 494 311 147 11 chr3 18353184 18353361 -199683797 - MIR3 SINE MIR -6 202 2 355 307 35 35 chr3 18353497 18353611 -199683547 - MIR3 SINE MIR -89 119 6 1959 141 24 3 chr3 18353822 18354120 -199683038 + AluSx SINE Alu 1 304 -8 379 305 19 19 chr3 18354575 18354680 -199682478 + MIR3 SINE MIR 82 186 -22 183 376 88 8 chr3 18355631 18355756 -199681402 + MIR SINE MIR 2 136 -126 * 243 329 79 0 chr3 18355749 18355825 -199681333 - L2 LINE L2 -3 3310 3229 232 245 32 43 chr3 18355826 18355920 -199681238 + MIR SINE MIR 120 212 -50 813 200 0 7 chr3 18357139 18357274 -199679884 - AluJo SINE Alu -177 135 2 357 343 78 24 chr3 18357274 18357609 -199679549 + L2 LINE L2 2036 2388 -926 566 357 80 52 chr3 18357633 18358264 -199678894 + L2 LINE L2 2618 3258 -14 301 277 95 36 chr3 18360442 18360579 -199676579 + MIR SINE MIR 3 147 -61 2178 106 17 0 chr3 18360582 18360875 -199676283 + AluSx SINE Alu 1 298 -14 520 183 263 66 chr3 18361253 18361466 -199675692 - MIR SINE MIR 0 262 8 227 294 203 7 chr3 18361552 18361695 -199675463 + MIR SINE MIR 82 252 -10 585 251 18 35 chr3 18361976 18362147 -199675011 - MIR SINE MIR -47 215 48 226 257 98 98 chr3 18362114 18362379 -199674779 - L2 LINE L2 -158 3114 2850 * 232 186 0 0 chr3 18362692 18362735 -199674423 + MIR SINE MIR 108 150 -112 255 322 100 27 chr3 18363737 18363921 -199673237 - MIR SINE MIR -35 173 10 304 273 13 67 chr3 18364785 18364935 -199672223 - L2 LINE L2 -55 3258 3117 489 172 86 11 chr3 18365510 18365603 -199671555 + AluJo SINE Alu 36 135 -177 1895 148 0 42 chr3 18365790 18366101 -199671057 + AluSx SINE Alu 1 298 -14 298 262 159 0 chr3 18366154 18366261 -199670897 + L2 LINE L2 3186 3309 -4 2269 94 0 7 chr3 18366404 18366715 -199670443 - AluSc SINE Alu 0 309 1 964 132 0 0 chr3 18366726 18366855 -199670303 - FLAM_C SINE Alu -4 129 1 246 257 80 35 chr3 18367073 18367186 -199669972 + MIR SINE MIR 94 211 -51 21 0 0 0 chr3 18367204 18367225 -199669933 + AT_rich Low_complexity Low_complexity 1 21 0 336 320 47 47 chr3 18367666 18367922 -199669236 - L2 LINE L2 -541 2773 2518 2015 236 55 54 chr3 18368007 18368160 -199668998 - L1ME3A LINE L1 -13 6157 6006 2111 88 0 11 chr3 18368160 18368434 -199668724 - AluSg SINE Alu -6 304 34 2015 236 55 54 chr3 18368434 18368938 -199668220 - L1ME3A LINE L1 -164 6006 5496 1828 167 37 45 chr3 18368938 18369315 -199667843 - MLT1A2 LTR MaLR 0 374 1 2015 236 55 54 chr3 18369315 18369344 -199667814 - L1ME3A LINE L1 -674 5496 5469 298 315 54 34 chr3 18369416 18369565 -199667593 - MIR SINE MIR -15 247 96 226 330 45 11 chr3 18370035 18370123 -199667035 + MIR3 SINE MIR 68 158 -50 189 265 73 0 chr3 18370458 18370526 -199666632 + L3b LINE CR1 1175 1247 -336 434 273 162 15 chr3 18371613 18371798 -199665360 - MIR SINE MIR -48 214 5 222 206 0 0 chr3 18371958 18372026 -199665132 + T-rich Low_complexity Low_complexity 1 68 0 38529 32 26 2 chr3 18372026 18377334 -199659824 - L1PA2 LINE L1 -137 6018 578 698 25 0 0 chr3 18377301 18377381 -199659777 - L1PA2 LINE L1 -6048 98 19 * 4489 157 16 35 chr3 18377531 18378459 -199658699 - L1MB7 LINE L1 -19 6165 5255 1807 183 69 19 chr3 18378463 18378840 -199658318 - MSTD LTR MaLR 0 396 1 7159 209 18 48 chr3 18378860 18379396 -199657762 - MSTD-int LTR MaLR -29 1706 1155 3972 178 31 23 chr3 18379396 18380173 -199656985 - LTR39 LTR ERV1 0 783 1 7159 209 18 48 chr3 18380173 18381395 -199655763 - MSTD-int LTR MaLR -580 1155 2 1691 152 42 115 chr3 18381396 18381823 -199655335 - MSTD LTR MaLR 0 396 1 6057 181 34 25 chr3 18381827 18383324 -199653834 - L1MB7 LINE L1 -895 5251 3741 216 0 0 0 chr3 18383564 18383588 -199653570 + (T)n Simple_repeat Simple_repeat 1 24 0 1802 52 0 0 chr3 18384441 18384653 -199652505 - AluY SINE Alu -6 305 94 185 303 63 49 chr3 18385619 18385761 -199651397 + L2 LINE L2 2608 2751 -563 380 323 39 2 chr3 18386256 18386411 -199650747 - MIR SINE MIR -50 212 44 1138 212 44 26 chr3 18386666 18387006 -199650152 + MLT1C LTR MaLR 59 404 -63 1559 200 13 29 chr3 18387027 18387342 -199649816 - AluJo SINE Alu -2 310 1 256 196 0 0 chr3 18387368 18387424 -199649734 + MLT1C LTR MaLR 447 502 -3 464 264 68 14 chr3 18387433 18387581 -199649577 - MIR SINE MIR 0 262 107 193 333 98 29 chr3 18388006 18388108 -199649050 + L2 LINE L2 3197 3305 -8 198 0 0 0 chr3 18388175 18388197 -199648961 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 378 0 0 0 chr3 18388196 18388238 -199648920 + (CA)n Simple_repeat Simple_repeat 1 42 0 619 296 63 0 chr3 18388852 18389041 -199648117 - MIR SINE MIR -4 258 58 252 313 0 36 chr3 18389908 18389991 -199647167 + MIR SINE MIR 1 80 -182 418 306 93 11 chr3 18390018 18390201 -199646957 + L2 LINE L2 3115 3312 -1 1371 293 75 38 chr3 18390235 18391023 -199646135 - L2 LINE L2 -201 3071 2262 793 315 165 24 chr3 18391138 18391720 -199645438 - L2 LINE L2 -1672 1642 978 357 246 0 0 chr3 18391720 18391785 -199645373 - MER5A DNA MER1_type 0 189 125 1878 131 23 36 chr3 18392188 18392493 -199644665 - AluJb SINE Alu -11 301 1 282 196 0 0 chr3 18392592 18392638 -199644520 - MIR SINE MIR -1 261 216 588 294 56 10 chr3 18392684 18392881 -199644277 - MIR SINE MIR -49 213 8 217 300 0 17 chr3 18393090 18393150 -199644008 - L2 LINE L2 -2 3311 3253 1887 132 10 13 chr3 18393253 18393564 -199643594 + AluSx SINE Alu 3 312 0 221 163 0 0 chr3 18393937 18393980 -199643178 + T-rich Low_complexity Low_complexity 1 43 0 1819 86 0 4 chr3 18393984 18394216 -199642942 - AluSq SINE Alu -82 231 1 2188 129 0 0 chr3 18394356 18394658 -199642500 - AluSg SINE Alu -8 302 1 2723 25 0 16 chr3 18394728 18395051 -199642107 - AluYb8 SINE Alu 0 318 1 288 209 30 15 chr3 18395543 18395610 -199641548 - MIR3 SINE MIR -4 204 137 332 236 136 43 chr3 18396140 18396280 -199640878 - MIR SINE MIR -10 252 100 412 265 62 39 chr3 18396986 18397142 -199640016 - MIR SINE MIR -58 204 47 2316 87 0 0 chr3 18397148 18397434 -199639724 + AluSg SINE Alu 1 286 -24 216 0 0 0 chr3 18397437 18397461 -199639697 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 348 270 70 43 chr3 18397529 18397714 -199639444 - HAL1 LINE L1 -291 2216 2027 206 108 54 0 chr3 18397789 18397826 -199639332 + (TTAAA)n Simple_repeat Simple_repeat 4 42 0 24 0 0 0 chr3 18397840 18397864 -199639294 + AT_rich Low_complexity Low_complexity 1 24 0 260 233 67 67 chr3 18397943 18398093 -199639065 - LTR16C LTR ERVL -15 476 327 800 294 91 23 chr3 18398598 18398983 -199638175 - HAL1 LINE L1 -599 1908 1498 345 256 141 34 chr3 18398983 18399460 -199637698 + L1M4 LINE L1 2566 3093 -3053 559 293 29 10 chr3 18399510 18399817 -199637341 - L1M4 LINE L1 -1523 4623 4311 * 715 229 132 49 chr3 18399816 18400165 -199636993 + L1MC5 LINE L1 7148 7525 -436 299 222 39 78 chr3 18400259 18400412 -199636746 + L1ME3 LINE L1 5961 6107 -55 2160 98 0 4 chr3 18401019 18401294 -199635864 + AluSx SINE Alu 1 274 -38 303 49 0 0 chr3 18401294 18401335 -199635823 + (TG)n Simple_repeat Simple_repeat 2 42 0 256 238 59 50 chr3 18401930 18402031 -199635127 + MER5A DNA MER1_type 8 109 -80 5091 125 8 26 chr3 18403053 18403851 -199633307 - LTR39 LTR ERV1 0 783 1 4428 210 50 15 chr3 18403956 18405305 -199631853 + L1MC3 LINE L1 42 1444 -4850 4617 219 55 15 chr3 18405326 18406667 -199630491 + L1MC3 LINE L1 4321 5715 -849 5463 147 37 6 chr3 18406671 18407692 -199629466 + L1MC3 LINE L1 5991 7043 -1160 3213 156 85 7 chr3 18407683 18408364 -199628794 + L1MC3 LINE L1 7276 8009 -194 * 4349 168 47 35 chr3 18408374 18409124 -199628034 + L1MB7 LINE L1 5112 5699 -485 4835 109 16 15 chr3 18409124 18409873 -199627285 + L1PA16 LINE L1 5406 6157 -9 4349 168 47 35 chr3 18409873 18410350 -199626808 + L1MB7 LINE L1 5699 6169 -15 1636 133 71 41 chr3 18410753 18411172 -199625986 - THE1C LTR MaLR 0 428 1 198 309 12 37 chr3 18411553 18411634 -199625524 + L2 LINE L2 1631 1709 -1605 24 0 0 0 chr3 18411753 18411777 -199625381 + AT_rich Low_complexity Low_complexity 1 24 0 1682 178 11 7 chr3 18411784 18412065 -199625093 + AluJb SINE Alu 1 282 -30 237 65 0 0 chr3 18412065 18412096 -199625062 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 1696 226 43 25 chr3 18412206 18412764 -199624394 - HAL1 LINE L1 -853 1654 1087 3386 165 18 45 chr3 18412794 18413253 -199623905 - L1MB8 LINE L1 -47 6131 5662 2304 83 0 20 chr3 18413253 18413554 -199623604 - AluSg SINE Alu -15 295 1 3386 165 18 45 chr3 18413554 18413800 -199623358 - L1MB8 LINE L1 -516 5662 5445 1765 178 26 13 chr3 18413800 18414104 -199623054 - AluJo SINE Alu -1 311 4 3386 165 18 45 chr3 18414104 18414159 -199622999 - L1MB8 LINE L1 -733 5445 5390 2236 215 34 2 chr3 18416111 18416665 -199620493 - L1MB8 LINE L1 -756 5390 4819 1811 284 117 34 chr3 18416663 18417669 -199619489 - HAL1 LINE L1 -1415 1092 3 * 793 284 109 23 chr3 18417688 18418349 -199618809 - L1MB8 LINE L1 -3316 2830 2113 328 315 57 12 chr3 18419092 18419261 -199617897 - MIR SINE MIR -65 197 17 1092 233 4 45 chr3 18419907 18420173 -199616985 - MIR SINE MIR -6 256 2 546 261 149 5 chr3 18420593 18420781 -199616377 - MIR SINE MIR -1 261 47 16785 134 12 3 chr3 18421327 18424901 -199612257 - L1PA10 LINE L1 -9 6159 2557 296 299 57 93 chr3 18425935 18426002 -199611156 + L3 LINE CR1 1305 1373 -204 3001 173 45 2 chr3 18426002 18426539 -199610619 - MER68 LTR ERV1 0 562 3 296 299 57 93 chr3 18426539 18426665 -199610493 + L3 LINE CR1 1373 1491 -86 255 314 58 73 chr3 18426909 18427015 -199610143 - L3 LINE CR1 -140 1437 1332 2215 128 0 0 chr3 18427015 18427319 -199609839 - AluSx SINE Alu -8 304 1 255 314 58 73 chr3 18427319 18427349 -199609809 - L3 LINE CR1 -245 1332 1303 442 327 70 55 chr3 18428012 18428269 -199608889 - L3 LINE CR1 -58 1519 1259 21 36 0 0 chr3 18428345 18428373 -199608785 + AT_rich Low_complexity Low_complexity 1 28 0 10699 197 59 32 chr3 18428418 18429360 -199607798 + L1MA7 LINE L1 2872 3787 -3923 312 91 0 0 chr3 18429360 18429404 -199607754 + (CA)n Simple_repeat Simple_repeat 2 45 0 10699 197 59 32 chr3 18429404 18431548 -199605610 + L1MA7 LINE L1 3787 5872 -1838 1256 164 23 18 chr3 18431548 18431767 -199605391 + AluJb SINE Alu 70 289 -23 10699 197 59 32 chr3 18431767 18433145 -199604013 + L1MA7 LINE L1 5872 7674 -36 2797 79 37 8 chr3 18433145 18433498 -199603660 - THE1B LTR MaLR -1 363 1 10699 197 59 32 chr3 18433498 18433536 -199603622 + L1MA7 LINE L1 7674 7710 0 646 226 0 0 chr3 18433536 18433642 -199603516 + FLAM_A SINE Alu 1 106 -36 21 36 0 0 chr3 18433642 18433670 -199603488 + AT_rich Low_complexity Low_complexity 1 28 0 232 356 85 27 chr3 18433848 18434036 -199603122 + MIR3 SINE MIR 9 207 -1 473 308 0 27 chr3 18434438 18434584 -199602574 + MIR3 SINE MIR 16 157 -51 316 292 22 22 chr3 18435524 18435613 -199601545 - MIR SINE MIR -82 126 38 216 281 64 94 chr3 18436622 18436793 -199600365 + L2 LINE L2 3101 3266 -6 342 291 64 0 chr3 18437035 18437145 -199600013 + MIR3 SINE MIR 87 203 -5 2207 112 10 3 chr3 18437867 18438162 -199598996 - AluSx SINE Alu -15 297 1 200 217 0 109 chr3 18438195 18438287 -199598871 + L2 LINE L2 3153 3234 -79 277 310 77 13 chr3 18438352 18438507 -199598651 - MIR SINE MIR -9 253 89 * 391 270 81 64 chr3 18438480 18438710 -199598448 + MIR SINE MIR 5 233 -29 514 293 224 33 chr3 18438724 18439148 -199598010 - L2 LINE L2 -776 2538 2034 * 1146 284 155 51 chr3 18439131 18439270 -199597888 + L2 LINE L2 1772 1895 -1419 2185 103 0 16 chr3 18439270 18439582 -199597576 + AluY SINE Alu 1 307 -4 1146 284 155 51 chr3 18439582 18440299 -199596859 + L2 LINE L2 1895 2717 -597 2430 192 69 17 chr3 18440598 18441042 -199596116 + L1MEc LINE L1 1172 1649 -4997 5489 41 0 44 chr3 18441042 18441333 -199595825 + L1PA5 LINE L1 5507 5809 -345 2458 87 0 0 chr3 18441333 18441642 -199595516 + AluY SINE Alu 1 309 -2 5489 41 0 44 chr3 18441642 18442028 -199595130 + L1PA5 LINE L1 5809 6154 0 2430 192 69 17 chr3 18442028 18442367 -199594791 + L1MEc LINE L1 1649 1969 -4677 * 3930 218 59 17 chr3 18442365 18442865 -199594293 + L1MB7 LINE L1 2268 2745 -3899 225 0 0 0 chr3 18442865 18442890 -199594268 + (TA)n Simple_repeat Simple_repeat 1 25 0 3930 218 59 17 chr3 18442890 18443689 -199593469 + L1MB7 LINE L1 2745 3622 -3022 2616 52 0 3 chr3 18443691 18443998 -199593160 + AluY SINE Alu 1 306 -5 4579 182 55 27 chr3 18444003 18445657 -199591501 + L1MB7 LINE L1 4948 6663 -19 341 169 26 39 chr3 18446799 18446876 -199590282 + MLT1I LTR MaLR 334 409 0 257 291 13 0 chr3 18446886 18446977 -199590181 + L1MEc LINE L1 1960 2090 -915 981 239 26 4 chr3 18446980 18447206 -199589952 - MIR SINE MIR 0 262 32 216 304 0 0 chr3 18447608 18447664 -199589494 + MER5A DNA MER1_type 128 183 -6 263 261 133 9 chr3 18447906 18448132 -199589026 + L1MEc LINE L1 2628 2881 -3763 810 179 33 20 chr3 18448161 18448312 -199588846 - FRAM SINE Alu -4 172 20 492 277 50 21 chr3 18448354 18448596 -199588562 + L1MEc LINE L1 2961 3209 -3435 2064 108 36 16 chr3 18448602 18448908 -199588250 - AluSx SINE Alu 0 312 1 180 308 58 0 chr3 18449424 18449476 -199587682 + L2 LINE L2 3218 3272 0 1609 159 4 4 chr3 18450110 18450368 -199586790 - AluJb SINE Alu -54 258 1 689 219 0 0 chr3 18450557 18450671 -199586487 - FLAM_C SINE Alu -25 118 5 205 274 32 16 chr3 18451648 18451710 -199585448 + L2 LINE L2 2608 2670 -644 275 262 3 0 chr3 18452336 18452413 -199584745 - MIR SINE MIR -68 140 71 236 209 121 22 chr3 18452651 18452742 -199584416 + LTR16B LTR ERVL 360 459 -5 1158 289 44 19 chr3 18452765 18452914 -199584244 + LTR16B LTR ERVL 38 182 -282 793 194 8 0 chr3 18452914 18453038 -199584120 - FLAM_A SINE Alu -8 125 1 1158 289 44 19 chr3 18453038 18453300 -199583858 + LTR16B LTR ERVL 182 459 -5 1173 195 43 8 chr3 18453301 18453557 -199583601 + AluJo SINE Alu 3 267 -45 516 177 0 21 chr3 18453662 18453758 -199583400 + MER46A DNA MER2_type 143 236 0 1908 121 18 7 chr3 18454068 18454350 -199582808 + AluJb SINE Alu 2 286 -26 428 261 83 44 chr3 18455248 18455428 -199581730 + MIR SINE MIR 49 235 -27 1697 127 14 11 chr3 18456003 18456279 -199580879 - AluSc SINE Alu -32 277 1 427 270 68 14 chr3 18456497 18456645 -199580513 + MIR SINE MIR 107 262 0 1215 220 55 41 chr3 18456654 18456736 -199580422 - MLT1C LTR MaLR -3 621 542 1373 219 13 29 chr3 18456736 18457051 -199580107 + AluJo SINE Alu 1 310 -2 1215 220 55 41 chr3 18457051 18457412 -199579746 - MLT1C LTR MaLR -82 542 59 1519 137 67 11 chr3 18457690 18457960 -199579198 - AluSg SINE Alu -25 285 1 315 289 98 46 chr3 18457979 18458152 -199579006 - MLT1J2 LTR MaLR -6 444 263 338 331 128 12 chr3 18458482 18458654 -199578504 + MLT1K LTR MaLR 39 230 -358 337 357 7 19 chr3 18459515 18459669 -199577489 + MIR3 SINE MIR 33 184 -24 180 0 0 0 chr3 18459781 18459801 -199577357 + (CCCCCA)n Simple_repeat Simple_repeat 3 22 0 189 146 146 0 chr3 18459809 18459850 -199577308 - MIR SINE MIR -128 134 88 341 347 119 6 chr3 18462661 18462837 -199574321 - MIR SINE MIR -19 243 48 353 329 34 13 chr3 18463072 18463221 -199573937 + MIR SINE MIR 50 201 -61 1651 256 90 31 chr3 18464120 18464267 -199572891 - L1 LINE L1 -3541 4024 3887 288 77 0 0 chr3 18464267 18464306 -199572852 + (CGTG)n Simple_repeat Simple_repeat 1 39 0 1651 256 90 31 chr3 18464306 18465250 -199571908 - L1 LINE L1 -3678 3887 2872 272 340 77 70 chr3 18465399 18465658 -199571500 + L3 LINE CR1 1259 1519 -58 199 255 31 122 chr3 18466413 18466511 -199570647 + L2 LINE L2 3175 3263 -9 * 204 320 60 30 chr3 18466507 18466607 -199570551 + L2 LINE L2 3151 3253 -19 1531 211 3 7 chr3 18467420 18467724 -199569434 - AluJo SINE Alu -9 303 1 1822 152 12 148 chr3 18468061 18468548 -199568610 - Tigger1 DNA MER2_type -1997 421 1 266 154 58 0 chr3 18468551 18468603 -199568555 + LTR16C LTR ERVL 437 491 0 214 273 53 40 chr3 18468622 18468772 -199568386 - L2 LINE L2 -307 2965 2814 1543 196 17 3 chr3 18469592 18469893 -199567265 - AluJb SINE Alu -7 305 1 1582 201 7 0 chr3 18470207 18470485 -199566673 - AluJb SINE Alu -28 284 5 818 248 14 18 chr3 18470488 18470706 -199566452 - LTR16B LTR ERVL -5 459 243 633 217 8 8 chr3 18470756 18470876 -199566282 + FLAM_A SINE Alu 6 125 -17 303 356 63 22 chr3 18471186 18471408 -199565750 - LTR16B LTR ERVL -170 294 64 666 226 6 88 chr3 18472089 18472270 -199564888 + FRAM SINE Alu 1 158 -18 1642 193 10 7 chr3 18472294 18472595 -199564563 + AluJo SINE Alu 5 306 -6 438 231 215 55 chr3 18472687 18473012 -199564146 + MLT1J LTR MaLR 110 486 -25 919 183 59 73 chr3 18474487 18474542 -199562616 + L1M4 LINE L1 5390 5444 -740 1750 174 26 13 chr3 18474542 18474846 -199562312 + AluJo SINE Alu 4 311 -1 919 183 59 73 chr3 18474846 18475079 -199562079 + L1M4 LINE L1 5444 5674 -510 2179 178 121 20 chr3 18475817 18476374 -199560784 - MLT1E2 LTR MaLR 0 624 1 186 202 11 146 chr3 18476374 18476463 -199560695 + L2 LINE L2 3221 3297 -16 225 65 0 0 chr3 18476912 18476943 -199560215 + (TG)n Simple_repeat Simple_repeat 2 32 0 807 167 0 0 chr3 18477532 18477646 -199559512 + FLAM_C SINE Alu 5 118 -25 1500 176 4 4 chr3 18477836 18478086 -199559072 + AluJb SINE Alu 1 250 -62 23 0 0 0 chr3 18478098 18478121 -199559037 + AT_rich Low_complexity Low_complexity 1 23 0 196 283 65 33 chr3 18478189 18478281 -199558877 - MIR SINE MIR -71 137 43 339 275 174 12 chr3 18479122 18479289 -199557869 + MIR SINE MIR 9 202 -60 188 171 49 0 chr3 18479457 18479498 -199557660 + MIR SINE MIR 214 256 -6 193 288 115 58 chr3 18479677 18479816 -199557342 + MIR SINE MIR 2 148 -114 1805 166 10 3 chr3 18479818 18480107 -199557051 + AluJo SINE Alu 3 293 -19 3070 120 263 2 chr3 18480129 18480670 -199556488 - THE1-int LTR MaLR -308 1272 591 2437 68 6 19 chr3 18480639 18480963 -199556195 + THE1B-int LTR MaLR 1261 1580 0 * 2306 107 67 12 chr3 18480963 18481308 -199555850 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr3 18482229 18482250 -199554908 + AT_rich Low_complexity Low_complexity 1 21 0 227 297 27 63 chr3 18482553 18482664 -199554494 - MIR SINE MIR -66 142 36 183 361 21 21 chr3 18482810 18482907 -199554251 - L2 LINE L2 -185 3087 2991 4461 167 53 22 chr3 18483354 18484520 -199552638 - L1MB5 LINE L1 -6 6168 4969 220 340 14 0 chr3 18485065 18485150 -199552008 - MIR SINE MIR -87 121 36 241 232 30 121 chr3 18485648 18485747 -199551411 + L2 LINE L2 3175 3264 -8 * 242 300 60 30 chr3 18485742 18485842 -199551316 + L2 LINE L2 3151 3253 -19 1723 192 3 7 chr3 18486651 18486959 -199550199 - AluJo SINE Alu -5 307 1 334 252 25 50 chr3 18488052 18488171 -199548987 + MIR SINE MIR 107 222 -40 841 149 8 0 chr3 18488190 18488311 -199548847 + FLAM_C SINE Alu 1 122 -21 258 208 50 0 chr3 18488333 18488415 -199548743 - MIR SINE MIR -65 143 88 1028 187 123 43 chr3 18488665 18488965 -199548193 - MER33 DNA MER1_type 0 324 1 302 371 57 7 chr3 18489250 18489390 -199547768 + L2 LINE L2 3125 3271 -1 524 259 30 0 chr3 18490051 18490186 -199546972 - MIR3 SINE MIR -49 159 21 251 295 21 21 chr3 18490754 18490849 -199546309 + L2 LINE L2 2966 3060 -212 448 340 93 42 chr3 18490936 18491292 -199545866 + L2 LINE L2 2899 3272 0 236 157 118 0 chr3 18491457 18491508 -199545650 - MLT2C1 LTR ERVL 0 397 341 583 158 26 20 chr3 18491511 18491663 -199545495 + GA-rich Low_complexity Low_complexity 3 155 0 2238 180 47 8 chr3 18491670 18492079 -199545079 - MLT2C2 LTR ERVL -46 469 1 995 298 148 20 chr3 18492210 18492697 -199544461 + L1MEd LINE L1 74 622 -5497 861 244 110 48 chr3 18492745 18493395 -199543763 + L1MEd LINE L1 815 1610 -880 683 244 0 0 chr3 18493395 18493526 -199543632 + FLAM_A SINE Alu 1 131 -11 561 215 54 8 chr3 18493574 18493654 -199543504 + AluJo SINE Alu 2 92 -220 1967 131 7 7 chr3 18493654 18493936 -199543222 + AluJb SINE Alu 19 300 -12 561 215 54 8 chr3 18493936 18493985 -199543173 + AluJo SINE Alu 92 137 -175 355 357 132 15 chr3 18494381 18494647 -199542511 + L1ME3A LINE L1 5652 5948 -222 2161 88 50 3 chr3 18494924 18495207 -199541951 - AluSg SINE Alu -14 296 1 418 330 105 19 chr3 18495421 18495745 -199541413 + L3 LINE CR1 1035 1386 -191 195 294 0 59 chr3 18495801 18495886 -199541272 + L3 LINE CR1 1470 1549 -28 733 228 101 13 chr3 18496499 18496736 -199540422 + MIR SINE MIR 5 262 0 1941 144 7 3 chr3 18497861 18498152 -199539006 - AluJb SINE Alu -20 292 1 242 255 117 21 chr3 18498341 18498435 -199538723 + MIR3 SINE MIR 68 170 -38 360 224 58 83 chr3 18498779 18498935 -199538223 - L2 LINE L2 0 3313 3162 303 174 0 71 chr3 18498938 18499036 -199538122 + A-rich Low_complexity Low_complexity 3 93 0 423 275 163 6 chr3 18499242 18499402 -199537756 - MIR SINE MIR -71 191 7 2077 129 46 9 chr3 18499691 18500039 -199537119 + MLT1A2 LTR MaLR 1 361 -13 241 275 0 15 chr3 18500039 18500170 -199536988 + (TG)n Simple_repeat Simple_repeat 1 129 0 2081 215 68 0 chr3 18500170 18500594 -199536564 - MLT2B1 LTR ERVL -67 453 1 700 273 0 44 chr3 18500945 18501128 -199536030 + MER91A DNA MER1_type 1 175 -21 795 181 0 0 chr3 18501885 18502075 -199535083 - FLAM_A SINE Alu 0 190 1 262 299 57 32 chr3 18502225 18502374 -199534784 + MIR SINE MIR 40 187 -67 241 251 42 108 chr3 18503691 18503792 -199533366 + L1MC5 LINE L1 7603 7709 -252 1068 170 60 13 chr3 18503792 18504027 -199533131 + L1MB4 LINE L1 5932 6177 -3 241 251 42 108 chr3 18504027 18504184 -199532974 + L1MC5 LINE L1 7709 7844 -117 279 274 54 113 chr3 18504414 18504600 -199532558 + L2 LINE L2 2987 3161 -111 276 266 0 0 chr3 18506212 18506276 -199530882 + MIR SINE MIR 183 246 -16 402 302 32 16 chr3 18506292 18506418 -199530740 - MIR SINE MIR -62 146 19 1982 151 0 7 chr3 18506872 18507170 -199529988 + AluJo SINE Alu 5 300 -12 440 290 98 81 chr3 18507253 18507650 -199529508 + L1MC4a LINE L1 5521 5924 -1884 253 322 44 0 chr3 18507847 18507937 -199529221 - MIR SINE MIR -148 114 21 239 278 111 9 chr3 18508428 18508536 -199528622 + MIR3 SINE MIR 49 167 -41 341 319 84 24 chr3 18509334 18509575 -199527583 + MIR SINE MIR 8 256 -6 350 333 57 8 chr3 18510348 18510471 -199526687 - MIR SINE MIR -64 144 16 296 308 23 30 chr3 18511308 18511441 -199525717 - MIR SINE MIR -112 150 19 423 277 18 44 chr3 18511489 18511708 -199525450 + MIR3 SINE MIR 4 216 -46 3685 152 9 9 chr3 18513190 18513821 -199523337 - L1PB4 LINE L1 0 6156 5526 2056 128 3 32 chr3 18514643 18514956 -199522202 + AluSx SINE Alu 1 304 -8 734 194 0 0 chr3 18515035 18515159 -199521999 + AluJo SINE Alu 12 135 -177 1594 200 7 0 chr3 18515159 18515444 -199521714 + AluJo SINE Alu 1 287 -25 234 186 0 0 chr3 18515452 18515495 -199521663 + MIR3 SINE MIR 136 178 -30 348 201 153 35 chr3 18516369 18516513 -199520645 - MIR SINE MIR -25 237 77 318 50 0 0 chr3 18517093 18517133 -199520025 + (TG)n Simple_repeat Simple_repeat 2 41 0 298 176 0 0 chr3 18517623 18517674 -199519484 + MIR SINE MIR 113 163 -99 2315 87 3 7 chr3 18517736 18518034 -199519124 + AluY SINE Alu 1 297 -14 240 306 45 32 chr3 18519411 18519568 -199517590 + MIR3 SINE MIR 36 194 -14 428 265 27 34 chr3 18519821 18519968 -199517190 - MIR3 SINE MIR -48 160 15 426 253 81 46 chr3 18520285 18520459 -199516699 + MIR3 SINE MIR 15 194 -14 253 263 137 3 chr3 18520760 18520894 -199516264 + MIR SINE MIR 21 167 -64 230 282 0 59 chr3 18520998 18521083 -199516075 + L2 LINE L2 3231 3310 -3 289 305 150 10 chr3 18523812 18524012 -199513146 + MIR SINE MIR 31 258 -4 260 330 0 31 chr3 18524609 18524706 -199512452 + MIR SINE MIR 20 113 -149 359 0 0 0 chr3 18524935 18524976 -199512182 - 5S rRNA rRNA -79 42 2 204 343 43 14 chr3 18525278 18525418 -199511740 - L2 LINE L2 -220 3052 2909 249 277 18 54 chr3 18525624 18525736 -199511422 + L2 LINE L2 3144 3251 -21 252 351 153 13 chr3 18526354 18526582 -199510576 + L3 LINE CR1 1309 1568 -9 467 324 78 21 chr3 18527892 18528173 -199508985 - L2 LINE L2 -31 3241 2945 203 235 12 35 chr3 18529150 18529235 -199507923 + (CAGAGA)n Simple_repeat Simple_repeat 2 84 0 2246 109 0 0 chr3 18529665 18529977 -199507181 + AluSx SINE Alu 1 312 0 418 239 172 8 chr3 18530111 18530245 -199506913 + MIR3 SINE MIR 30 185 -23 525 257 99 20 chr3 18530528 18530680 -199506478 - MIR3 SINE MIR -30 178 15 477 202 65 16 chr3 18531240 18531364 -199505794 + MIR3 SINE MIR 51 180 -28 1176 234 87 36 chr3 18532199 18532614 -199504544 + Charlie4a DNA MER1_type 39 474 -34 2412 62 0 7 chr3 18532863 18533171 -199503987 + AluY SINE Alu 1 306 -5 248 338 40 71 chr3 18533351 18533549 -199503609 + L2 LINE L2 3065 3256 -16 1767 143 42 0 chr3 18533699 18533985 -199503173 + AluJb SINE Alu 1 298 -14 2178 92 7 3 chr3 18534880 18535184 -199501974 - AluSc SINE Alu 0 309 5 180 294 206 29 chr3 18535555 18535657 -199501501 - L2 LINE L2 -25 3247 3128 289 385 37 0 chr3 18535797 18535906 -199501252 + MIR SINE MIR 35 147 -61 284 310 70 0 chr3 18536303 18536403 -199500755 - MIR SINE MIR -68 140 34 284 250 12 50 chr3 18536496 18536576 -199500582 - MIR SINE MIR -117 145 69 1048 110 7 13 chr3 18537416 18537570 -199499588 + MSTB1 LTR MaLR 276 428 -4 2468 163 5 0 chr3 18537573 18537978 -199499180 + MSTB1-int LTR MaLR 15 421 -1230 447 281 68 14 chr3 18538636 18538782 -199498376 - MIR3 SINE MIR -37 171 18 239 247 14 55 chr3 18539033 18539106 -199498052 + MIR3 SINE MIR 102 171 -37 293 313 35 26 chr3 18540562 18540677 -199496481 + MIR SINE MIR 30 145 -63 362 254 16 22 chr3 18540726 18540877 -199496281 + MIR SINE MIR 3 132 -76 457 315 14 14 chr3 18541524 18541667 -199495491 + MIR3 SINE MIR 13 155 -53 742 216 47 0 chr3 18542028 18542176 -199494982 + MIR3 SINE MIR 33 187 -21 1246 277 51 31 chr3 18542267 18542759 -199494399 - MER77 LTR ERV1 -6 599 52 191 200 432 11 chr3 18543267 18543362 -199493796 + L2 LINE L2 1443 1577 -1737 1384 274 159 21 chr3 18543376 18543539 -199493619 + L2 LINE L2 1723 1862 -1452 2052 105 21 0 chr3 18543539 18543824 -199493334 + AluSg SINE Alu 1 291 -19 1384 274 159 21 chr3 18543824 18544269 -199492889 + L2 LINE L2 1862 2415 -899 595 302 201 17 chr3 18544301 18544398 -199492760 + L2 LINE L2 2889 2967 -346 2129 84 7 3 chr3 18544398 18544684 -199492474 - AluSc SINE Alu -22 287 1 595 302 201 17 chr3 18544684 18544930 -199492228 + L2 LINE L2 2967 3295 -18 625 195 134 12 chr3 18544933 18545097 -199492061 + MER97c DNA MER1_type? 1 184 -906 786 303 174 31 chr3 18546431 18546949 -199490209 + L3 LINE CR1 982 1573 -4 1173 98 186 0 chr3 18547135 18547329 -199489829 - MER30 DNA MER1_type 0 230 1 298 256 107 74 chr3 18548735 18548856 -199488302 - MIR SINE MIR -114 148 24 222 37 0 0 chr3 18549275 18549302 -199487856 + (A)n Simple_repeat Simple_repeat 1 27 0 357 314 146 11 chr3 18549314 18549499 -199487659 - L3 LINE CR1 -7 1570 1361 275 169 65 52 chr3 18549501 18549578 -199487580 - MIR SINE MIR -101 161 84 389 323 106 22 chr3 18549593 18549819 -199487339 - L3 LINE CR1 -410 1167 923 1867 136 11 0 chr3 18549864 18550150 -199487008 - AluJb SINE Alu -23 289 1 512 272 163 32 chr3 18550843 18551089 -199486069 - L3 LINE CR1 -2 1575 1298 218 301 54 11 chr3 18551444 18551537 -199485621 + MIR SINE MIR 160 256 -6 235 287 157 9 chr3 18556773 18556888 -199480270 - MIR3 SINE MIR -67 141 10 225 94 0 0 chr3 18557359 18557391 -199479767 + (TCC)n Simple_repeat Simple_repeat 2 33 0 207 0 0 0 chr3 18557673 18557696 -199479462 + (TG)n Simple_repeat Simple_repeat 2 24 0 215 293 132 78 chr3 18558442 18558609 -199478549 - MIR3 SINE MIR -15 193 18 1881 93 34 0 chr3 18559433 18559731 -199477427 + AluSg SINE Alu 2 308 0 300 247 133 52 chr3 18559787 18559953 -199477205 - MIR3 SINE MIR 0 208 34 240 266 0 48 chr3 18561379 18561503 -199475655 + (TG)n Simple_repeat Simple_repeat 2 119 0 1776 204 50 72 chr3 18562318 18562872 -199474286 - MER34 LTR ERV1 0 542 1 200 300 29 29 chr3 18562938 18563008 -199474150 - L2 LINE L2 0 3272 3203 * 895 271 45 20 chr3 18563004 18563248 -199473910 - MIR SINE MIR -10 252 3 700 288 121 21 chr3 18564185 18564525 -199472633 + L1MC4a LINE L1 5454 5809 -361 191 296 19 0 chr3 18564778 18564832 -199472326 - MIR SINE MIR -87 121 67 592 299 85 5 chr3 18564983 18565194 -199471964 + MIR SINE MIR 1 228 -34 314 228 188 34 chr3 18565567 18565716 -199471442 - MARNA DNA Mariner -42 544 373 468 307 56 28 chr3 18565880 18566131 -199471027 - MARNA DNA Mariner -307 279 22 388 321 138 12 chr3 18567261 18567492 -199469666 + L2 LINE L2 2560 2820 -494 397 232 136 27 chr3 18567492 18567658 -199469500 + MIR SINE MIR 2 195 -13 193 118 39 0 chr3 18568885 18568936 -199468222 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 795 153 0 22 chr3 18569637 18569774 -199467384 + AluJo SINE Alu 1 134 -178 2041 106 0 0 chr3 18570116 18570400 -199466758 - AluSc SINE Alu -8 301 18 2227 90 7 0 chr3 18571100 18571399 -199465759 + AluSx SINE Alu 1 301 -11 4926 124 8 0 chr3 18571542 18572265 -199464893 + L1PA16 LINE L1 5429 6157 -9 261 258 32 0 chr3 18573404 18573466 -199463692 - L3 LINE CR1 -2 1575 1512 350 292 98 58 chr3 18573620 18574083 -199463075 + L1M4 LINE L1 2862 3404 -2742 1303 219 58 20 chr3 18574097 18574395 -199462763 - Charlie1b DNA MER1_type -2260 501 130 1973 138 7 0 chr3 18574395 18574692 -199462466 - AluSx SINE Alu -13 299 1 1303 219 58 20 chr3 18574692 18574818 -199462340 - Charlie1b DNA MER1_type -2631 130 10 263 267 100 68 chr3 18574868 18575377 -199461781 + L1M4 LINE L1 3689 4210 -1936 287 303 63 19 chr3 18575470 18575749 -199461409 - L1 LINE L1 -1313 4833 4541 883 189 91 42 chr3 18575778 18576043 -199461115 + L2 LINE L2 3031 3308 -5 1887 118 51 0 chr3 18576133 18576429 -199460729 - AluSx SINE Alu -1 311 1 2018 107 0 4 chr3 18576461 18576741 -199460417 - AluSg SINE Alu -31 279 1 558 277 139 60 chr3 18576755 18577130 -199460028 - L1 LINE L1 -1772 4374 3967 941 309 98 48 chr3 18577279 18577787 -199459371 - L1M4 LINE L1 -1133 5013 4447 808 163 0 0 chr3 18577787 18577910 -199459248 - FLAM_A SINE Alu -10 123 1 941 309 98 48 chr3 18577910 18578225 -199458933 - L1M4 LINE L1 -1699 4447 4149 * 1038 249 103 47 chr3 18578200 18578706 -199458452 - L1M4 LINE L1 -940 5206 4673 855 238 46 19 chr3 18578723 18579046 -199458112 - L1M4 LINE L1 -1543 4603 4272 893 286 40 19 chr3 18579053 18579368 -199457790 - L1MA9 LINE L1 -30 6282 5958 1775 150 34 17 chr3 18579368 18579662 -199457496 - AluJb SINE Alu -13 299 1 950 239 16 3 chr3 18579687 18579948 -199457210 - L1M4 LINE L1 -1107 5039 4776 1705 230 8 44 chr3 18580773 18581247 -199455911 + MLT2B1 LTR ERVL 1 457 -63 207 0 0 0 chr3 18581301 18581324 -199455834 + (TG)n Simple_repeat Simple_repeat 2 24 0 363 278 130 68 chr3 18581594 18581756 -199455402 - MER5B DNA MER1_type -6 172 1 195 234 85 53 chr3 18581842 18581862 -199455296 - MIR SINE MIR 0 262 244 789 148 7 22 chr3 18581862 18581997 -199455161 + FLAM_C SINE Alu 1 133 0 195 234 85 53 chr3 18581997 18582070 -199455088 - MIR SINE MIR -18 244 166 299 301 117 6 chr3 18582096 18582259 -199454899 - MIR SINE MIR -3 259 79 1517 159 31 70 chr3 18582364 18582748 -199454410 - L1ME2 LINE L1 -5 6159 5791 2164 231 54 23 chr3 18582750 18583476 -199453682 - L1M4c LINE L1 -4861 1523 776 2313 57 29 0 chr3 18583477 18583757 -199453401 - AluY SINE Alu -23 288 1 761 237 58 19 chr3 18583825 18584137 -199453021 + L1M4 LINE L1 1964 2287 -4109 2077 120 0 34 chr3 18584197 18584521 -199452637 - AluSp SINE Alu 0 313 1 2140 145 0 0 chr3 18584532 18584835 -199452323 - AluSx SINE Alu -9 303 1 1181 193 30 4 chr3 18584889 18585159 -199451999 + L1M4 LINE L1 5332 5608 -645 * 4404 170 53 59 chr3 18585158 18585199 -199451959 + L1MB4 LINE L1 4274 4314 -1866 1574 149 97 0 chr3 18585199 18585508 -199451650 + MER44D DNA MER2_type 1 609 0 4404 170 53 59 chr3 18585508 18586244 -199450914 + L1MB4 LINE L1 4314 5053 -1127 2446 83 0 0 chr3 18586244 18586546 -199450612 - AluY SINE Alu -9 302 1 4404 170 53 59 chr3 18586546 18587689 -199449469 + L1MB4 LINE L1 5053 6172 -8 2172 99 3 3 chr3 18587777 18588081 -199449077 + AluSx SINE Alu 1 304 -8 783 153 0 22 chr3 18588423 18588560 -199448598 - AluJo SINE Alu -178 134 1 230 122 41 0 chr3 18589263 18589312 -199447846 + (CAAA)n Simple_repeat Simple_repeat 4 54 0 393 231 135 27 chr3 18590545 18590705 -199446453 - MIR SINE MIR -22 186 2 380 321 138 12 chr3 18590705 18590936 -199446222 - L2 LINE L2 -494 2820 2560 1857 185 110 17 chr3 18591564 18592015 -199445143 - MLT1E2 LTR MaLR 0 572 111 2242 104 7 0 chr3 18593453 18593750 -199443408 + AluSx SINE Alu 1 299 -13 265 298 37 16 chr3 18593931 18594119 -199443039 + L1P4 LINE L1 5466 5657 -509 2228 95 7 10 chr3 18594390 18594696 -199442462 + AluSc SINE Alu 5 309 0 337 265 11 76 chr3 18595602 18595722 -199441436 - L1M4 LINE L1 -6363 179 74 2397 63 26 0 chr3 18595722 18596025 -199441133 - AluY SINE Alu 0 311 1 337 265 11 76 chr3 18596025 18596089 -199441069 - L1M4 LINE L1 -6468 74 7 761 237 58 19 chr3 18596093 18596405 -199440753 + L1M4 LINE L1 1964 2287 -4109 2077 120 0 34 chr3 18596465 18596789 -199440369 - AluSp SINE Alu 0 313 1 2140 145 0 0 chr3 18596800 18597103 -199440055 - AluSx SINE Alu -9 303 1 1231 191 26 4 chr3 18597154 18597427 -199439731 + L1M4 LINE L1 5330 5608 -645 * 4382 171 54 59 chr3 18597426 18597467 -199439691 + L1MB4 LINE L1 4274 4314 -1866 1574 149 97 0 chr3 18597467 18597776 -199439382 + MER44D DNA MER2_type 1 609 0 4382 171 54 59 chr3 18597776 18598506 -199438652 + L1MB4 LINE L1 4314 5046 -1134 2446 83 0 0 chr3 18598506 18598808 -199438350 - AluY SINE Alu -9 302 1 4382 171 54 59 chr3 18598808 18599952 -199437206 + L1MB4 LINE L1 5046 6172 -8 1060 95 0 7 chr3 18600040 18600187 -199436971 + AluSq/x SINE Alu 1 146 -167 1758 288 96 43 chr3 18600192 18600270 -199436888 - L1MEc LINE L1 -4487 1909 1837 2053 57 30 50 chr3 18600270 18600569 -199436589 - AluY SINE Alu -18 293 1 1758 288 96 43 chr3 18600569 18600580 -199436578 - L1MEc LINE L1 -4559 1837 1828 2582 40 0 0 chr3 18600580 18600882 -199436276 - AluY SINE Alu -9 302 1 1758 288 96 43 chr3 18600882 18602433 -199434725 - L1MEc LINE L1 -4568 1828 181 1246 53 0 0 chr3 18602433 18602584 -199434574 - AluY SINE Alu 0 311 161 567 232 7 13 chr3 18602585 18602736 -199434422 - L1MEc LINE L1 -6209 187 38 192 77 0 0 chr3 18604807 18604833 -199432325 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1891 138 0 4 chr3 18604842 18605117 -199432041 - AluJo SINE Alu -36 276 3 714 271 36 24 chr3 18605404 18605789 -199431369 + LTR16A LTR ERVL 25 444 -6 2380 131 74 59 chr3 18605886 18606413 -199430745 + MER6A DNA MER2_type 1 535 -70 4714 135 8 5 chr3 18606413 18607846 -199429312 + L1MA4 LINE L1 4582 6020 -280 318 161 99 12 chr3 18607856 18607937 -199429221 + L1MB4 LINE L1 6093 6180 0 495 145 0 0 chr3 18607951 18608027 -199429131 + MER6A DNA MER2_type 524 599 -6 1188 131 35 20 chr3 18608202 18608400 -199428758 - AluJb SINE Alu -26 286 86 22 35 0 0 chr3 18608461 18608490 -199428668 + AT_rich Low_complexity Low_complexity 1 29 0 576 240 25 78 chr3 18608931 18609118 -199428040 - MIR3 SINE MIR -11 197 13 970 224 35 26 chr3 18612076 18612304 -199424854 + MIR SINE MIR 28 257 -5 2404 144 0 15 chr3 18612329 18612725 -199424433 - MLT1B LTR MaLR 0 390 1 278 215 196 28 chr3 18613782 18613889 -199423269 - MIR3 SINE MIR 0 208 84 1926 189 46 9 chr3 18614007 18614472 -199422686 + L1MB2 LINE L1 5715 6195 0 1743 161 22 59 chr3 18614480 18614804 -199422354 + AluJo SINE Alu 1 312 0 186 103 0 0 chr3 18614804 18614833 -199422325 + (GA)n Simple_repeat Simple_repeat 1 29 0 279 0 0 0 chr3 18614846 18614877 -199422281 + (CA)n Simple_repeat Simple_repeat 2 32 0 501 280 71 24 chr3 18617862 18617995 -199419163 - MIR3 SINE MIR -1 207 63 2354 90 0 3 chr3 18617995 18618305 -199418853 + AluSc SINE Alu 1 309 0 501 280 71 24 chr3 18618305 18618339 -199418819 - MIR3 SINE MIR -145 63 32 374 319 77 22 chr3 18618607 18618789 -199418369 + MIR3 SINE MIR 16 207 -1 896 110 51 16 chr3 18619203 18619355 -199417803 + L1PB4 LINE L1 5768 5913 -243 841 83 107 0 chr3 18619355 18619476 -199417682 + L1PB4 LINE L1 6011 6144 -12 896 110 51 16 chr3 18619476 18619508 -199417650 + L1PB4 LINE L1 5913 6144 -12 189 0 0 0 chr3 18620375 18620396 -199416762 + (T)n Simple_repeat Simple_repeat 1 21 0 2534 58 0 3 chr3 18620926 18621236 -199415922 - AluY SINE Alu -2 309 1 259 65 43 0 chr3 18621357 18621403 -199415755 + (CA)n Simple_repeat Simple_repeat 1 48 0 272 154 0 0 chr3 18621511 18621563 -199415595 - HAL1 LINE L1 -142 2365 2314 506 136 0 0 chr3 18621564 18621645 -199415513 - AluSg/x SINE Alu -11 298 218 4211 154 33 25 chr3 18621968 18622845 -199414313 + L1MB4 LINE L1 5297 6180 0 699 159 113 20 chr3 18623300 18623451 -199413707 + MER63 DNA MER1_type 896 1060 0 303 95 0 0 chr3 18625610 18625652 -199411506 + 5S rRNA rRNA 1 42 -79 380 282 98 41 chr3 18625993 18626238 -199410920 + L2 LINE L2 3003 3261 -52 201 312 39 13 chr3 18627068 18627145 -199410013 + L2 LINE L2 3227 3305 -8 363 302 76 6 chr3 18627262 18627434 -199409724 + MIR SINE MIR 21 204 -58 887 252 73 3 chr3 18628278 18628564 -199408594 + L1ME LINE L1 5479 5784 -380 686 144 38 8 chr3 18628590 18628736 -199408422 - L1MD3 LINE L1 0 7995 7632 701 232 61 77 chr3 18628739 18629293 -199407865 + MER51A LTR ERV1 1 640 0 210 296 102 71 chr3 18629717 18629815 -199407343 + L3 LINE CR1 1472 1572 -5 1308 225 65 8 chr3 18630061 18630417 -199406741 - MLT1B-int LTR MaLR -989 382 7 280 205 0 71 chr3 18630439 18630551 -199406607 - MLT1B LTR MaLR -15 375 272 495 261 28 17 chr3 18630959 18631139 -199406019 + HAL1 LINE L1 1621 1802 -705 960 81 0 0 chr3 18631264 18631387 -199405771 + AluY SINE Alu 1 123 -188 195 42 0 0 chr3 18631406 18631430 -199405728 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 886 177 0 6 chr3 18632390 18632565 -199404593 - L1MC/D LINE L1 -623 5619 5446 * 1021 248 18 0 chr3 18632563 18632841 -199404317 + L1MC/D LINE L1 4654 4936 -1210 737 224 125 11 chr3 18632898 18633162 -199403996 + L1MC/D LINE L1 5032 5325 -821 867 212 12 0 chr3 18633167 18633337 -199403821 + FRAM SINE Alu 1 172 -4 372 104 26 26 chr3 18633345 18633422 -199403736 + GA-rich Low_complexity Low_complexity 3 79 0 1360 213 9 14 chr3 18633435 18633782 -199403376 + L1MC/D LINE L1 5363 5707 -535 24 0 0 0 chr3 18633786 18633810 -199403348 + AT_rich Low_complexity Low_complexity 1 24 0 1060 105 0 0 chr3 18633918 18634061 -199403097 + AluSc SINE Alu 138 280 -29 2365 89 0 6 chr3 18634097 18634412 -199402746 + AluSq SINE Alu 1 313 0 259 362 7 13 chr3 18634946 18635098 -199402060 + LTR33 LTR ERVL 1 151 -370 2117 183 13 15 chr3 18636642 18637101 -199400057 + L1M2 LINE L1 4877 5334 -812 2324 164 11 19 chr3 18637118 18637591 -199399567 + L1M2 LINE L1 5301 5771 -520 1391 101 0 0 chr3 18637606 18637794 -199399364 + AluSg SINE Alu 1 188 -122 2531 52 0 3 chr3 18638241 18638551 -199398607 - AluY SINE Alu -2 309 1 46 45 0 0 chr3 18639778 18639845 -199397313 + AT_rich Low_complexity Low_complexity 1 67 0 886 108 8 0 chr3 18640977 18641107 -199396051 + L1PA16 LINE L1 6027 6157 -9 4259 142 36 26 chr3 18641110 18641970 -199395188 - L1MA8 LINE L1 -150 6141 5273 2389 83 0 6 chr3 18644546 18644859 -199392299 + AluY SINE Alu 1 311 0 940 219 92 15 chr3 18646333 18646658 -199390500 - L1ME2 LINE L1 -8 6156 5807 390 264 71 76 chr3 18646672 18646869 -199390289 + L1MC3 LINE L1 7100 7470 -525 861 271 50 85 chr3 18647035 18647518 -199389640 + MLT1K LTR MaLR 123 588 0 1673 167 37 14 chr3 18647701 18648055 -199389103 - L1MA4 LINE L1 0 6300 5939 269 334 141 10 chr3 18648276 18648485 -199388673 - MIR SINE MIR -14 248 18 272 154 0 0 chr3 18649069 18649121 -199388037 - HAL1 LINE L1 -142 2365 2314 2280 100 3 0 chr3 18649122 18649422 -199387736 - AluSq SINE Alu -12 301 1 276 30 0 0 chr3 18649552 18649585 -199387573 + (TG)n Simple_repeat Simple_repeat 2 34 0 815 216 0 0 chr3 18649586 18649734 -199387424 - FRAM SINE Alu -29 147 1 212 0 0 35 chr3 18649734 18649763 -199387395 + (TG)n Simple_repeat Simple_repeat 1 28 0 1062 209 0 0 chr3 18649869 18650065 -199387093 + Tigger7 DNA MER2_type 17 212 -2275 294 125 0 0 chr3 18651263 18651311 -199385847 + (CA)n Simple_repeat Simple_repeat 2 49 0 545 291 39 24 chr3 18652071 18652404 -199384754 - L1MEd LINE L1 -4862 1257 920 298 298 114 32 chr3 18652703 18652861 -199384297 - L2 LINE L2 0 3272 3102 228 35 0 0 chr3 18653128 18653157 -199384001 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 289 311 58 18 chr3 18653230 18653455 -199383703 + L1M4 LINE L1 3897 4130 -2016 3247 221 17 31 chr3 18653597 18654292 -199382866 - L1MC2 LINE L1 -282 6062 5381 2598 90 22 3 chr3 18654292 18654658 -199382500 - THE1C LTR MaLR -2 373 1 3247 221 17 31 chr3 18654658 18655050 -199382108 - L1MC2 LINE L1 -963 5381 4985 647 367 78 35 chr3 18655351 18656481 -199380677 + L2 LINE L2 989 2167 -1147 325 237 0 40 chr3 18656568 18656644 -199380514 + MER45A DNA AcHobo 5 77 -101 1444 146 23 0 chr3 18656698 18656958 -199380200 - L1MA2 LINE L1 0 6304 6039 362 147 29 15 chr3 18656959 18657027 -199380131 + MER45A DNA AcHobo 100 168 -10 247 214 38 0 chr3 18657237 18657368 -199379790 + (TA)n Simple_repeat Simple_repeat 2 137 0 662 318 34 0 chr3 18657560 18657796 -199379362 + MIR SINE MIR 19 262 0 234 0 0 0 chr3 18657825 18657851 -199379307 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1261 233 64 22 chr3 18658651 18659059 -199378099 + MLT1C LTR MaLR 42 466 -1 1312 251 19 6 chr3 18659060 18659422 -199377736 + MLT1C-int LTR MaLR 1 367 -1004 236 204 0 0 chr3 18660030 18660079 -199377079 + T-rich Low_complexity Low_complexity 1 49 0 2486 118 8 5 chr3 18660571 18660945 -199376213 - THE1C LTR MaLR 0 375 1 21 26 0 26 chr3 18662277 18662303 -199374855 + AT_rich Low_complexity Low_complexity 1 26 -12 4802 92 20 28 chr3 18662303 18662486 -199374672 - L1PB1 LINE L1 -2 6149 5966 3636 107 99 33 chr3 18662486 18662536 -199374622 + LTR12 LTR ERV1 1 46 -642 2395 76 3 0 chr3 18662536 18662838 -199374320 - AluY SINE Alu -8 303 1 3636 107 99 33 chr3 18662838 18663432 -199373726 + LTR12 LTR ERV1 46 688 0 4802 92 20 28 chr3 18663432 18663607 -199373551 - L1PB1 LINE L1 -185 5966 5791 1600 100 4 9 chr3 18663607 18663837 -199373321 - AluY SINE Alu -16 295 67 4802 92 20 28 chr3 18663837 18663855 -199373303 - L1PB1 LINE L1 -360 5791 5774 351 0 0 0 chr3 18663855 18663894 -199373264 + (TG)n Simple_repeat Simple_repeat 2 40 0 4802 92 20 28 chr3 18663894 18664254 -199372904 - L1PB1 LINE L1 -377 5774 5417 21 26 0 26 chr3 18664254 18664266 -199372892 + AT_rich Low_complexity Low_complexity 26 38 0 270 0 0 0 chr3 18664373 18664403 -199372755 + (CA)n Simple_repeat Simple_repeat 1 30 0 2774 16 0 0 chr3 18665871 18666175 -199370983 - AluYa5 SINE Alu -7 304 1 279 0 0 0 chr3 18666204 18666235 -199370923 + (A)n Simple_repeat Simple_repeat 1 31 0 1422 165 0 0 chr3 18666518 18666736 -199370422 - AluJo SINE Alu -14 298 81 220 380 10 10 chr3 18667043 18667143 -199370015 + L2 LINE L2 2642 2741 -573 238 302 10 21 chr3 18667201 18667297 -199369861 - L2 LINE L2 -1 3271 3177 1159 248 26 0 chr3 18668217 18668528 -199368630 - L1MB7 LINE L1 -456 5722 5404 1550 195 25 42 chr3 18668532 18668963 -199368195 + L1MB7 LINE L1 5752 6175 -9 21 57 0 0 chr3 18671490 18671525 -199365633 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr3 18671591 18671620 -199365538 + AT_rich Low_complexity Low_complexity 1 29 0 220 226 75 0 chr3 18672982 18673035 -199364123 + MIR SINE MIR 90 146 -116 2123 105 7 3 chr3 18675765 18676051 -199361107 + AluSp SINE Alu 1 287 -26 25 51 0 0 chr3 18676051 18676090 -199361068 + AT_rich Low_complexity Low_complexity 1 39 0 2184 131 0 10 chr3 18676793 18677106 -199360052 + AluSx SINE Alu 1 310 -2 523 173 273 13 chr3 18677124 18677274 -199359884 + MER5A DNA MER1_type 1 189 0 21 36 0 0 chr3 18677746 18677774 -199359384 + AT_rich Low_complexity Low_complexity 1 28 0 361 268 160 11 chr3 18677901 18678284 -199358874 + L1ME4a LINE L1 5678 6115 -6 21 36 0 0 chr3 18678376 18678404 -199358754 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 18678813 18678835 -199358323 + AT_rich Low_complexity Low_complexity 1 22 0 2875 7 0 0 chr3 18678841 18679151 -199358007 + AluYa5 SINE Alu 1 310 -1 207 0 0 0 chr3 18679226 18679249 -199357909 + (CA)n Simple_repeat Simple_repeat 2 24 0 1981 152 7 0 chr3 18679650 18679953 -199357205 - AluJb SINE Alu -3 309 5 399 252 65 9 chr3 18679979 18680086 -199357072 - L2 LINE L2 -4 3309 3197 38 22 0 0 chr3 18680517 18680562 -199356596 + AT_rich Low_complexity Low_complexity 1 45 0 1234 171 39 12 chr3 18683099 18683356 -199353802 + L1MB5 LINE L1 5911 6174 0 291 283 42 17 chr3 18683765 18683885 -199353273 + MER5C DNA MER1_type 2 124 -200 2256 107 0 13 chr3 18684027 18684325 -199352833 - AluSx SINE Alu -18 294 1 235 346 12 0 chr3 18684355 18684436 -199352722 - L2 LINE L2 -38 3234 3153 602 288 96 5 chr3 18684468 18684687 -199352471 + L3 LINE CR1 1335 1573 -4 215 136 0 153 chr3 18685489 18685548 -199351610 + L2 LINE L2 3264 3313 0 180 176 0 0 chr3 18685835 18685869 -199351289 + CT-rich Low_complexity Low_complexity 4 37 0 227 344 0 24 chr3 18685895 18686020 -199351138 + CT-rich Low_complexity Low_complexity 1 122 0 327 256 26 0 chr3 18686429 18686507 -199350651 + L2 LINE L2 3223 3302 -11 181 228 18 70 chr3 18686459 18686516 -199350642 + MIR SINE MIR 209 262 0 * 617 242 169 29 chr3 18686785 18686884 -199350274 - MIR SINE MIR -2 260 176 2179 149 0 20 chr3 18686884 18687227 -199349931 - MER1B DNA MER1_type 0 337 2 617 242 169 29 chr3 18687227 18687363 -199349795 - MIR SINE MIR -86 176 1 2556 40 0 7 chr3 18687639 18687942 -199349216 + AluY SINE Alu 1 301 -10 207 341 102 21 chr3 18688663 18688907 -199348251 - L2 LINE L2 -1005 2309 2031 1762 164 73 0 chr3 18688907 18689194 -199347964 + AluJb SINE Alu 1 308 -4 207 341 102 21 chr3 18689194 18689274 -199347884 - L2 LINE L2 -1283 2031 1959 559 193 146 10 chr3 18689295 18689487 -199347671 - MER63 DNA MER1_type -37 1023 806 1577 178 7 43 chr3 18689631 18689935 -199347223 - AluJb SINE Alu -15 297 5 2421 85 0 0 chr3 18689958 18690265 -199346893 - AluYa5 SINE Alu -4 307 1 297 0 0 0 chr3 18690295 18690328 -199346830 + (A)n Simple_repeat Simple_repeat 1 33 0 1945 121 0 0 chr3 18690609 18690873 -199346285 - AluJo SINE Alu -14 298 35 2520 219 73 55 chr3 18692733 18692877 -199344281 + L1MC4a LINE L1 6629 6769 -1039 1325 184 4 0 chr3 18692877 18693111 -199344047 + MER46A DNA MER2_type 1 235 -1 2520 219 73 55 chr3 18693111 18693498 -199343660 + L1MC4a LINE L1 6769 7148 -660 2106 120 11 0 chr3 18693498 18693782 -199343376 + AluSq SINE Alu 1 287 -26 252 0 0 0 chr3 18693782 18693810 -199343348 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 2520 219 73 55 chr3 18693810 18694331 -199342827 + L1MC4a LINE L1 7148 7676 -132 3275 130 47 0 chr3 18694331 18694883 -199342275 - L1MA5 LINE L1 -2 6298 5721 2520 219 73 55 chr3 18694883 18695011 -199342147 + L1MC4a LINE L1 7676 7800 -8 1209 113 79 29 chr3 18695876 18696116 -199341042 + L1MB3 LINE L1 5930 6181 -2 1641 183 0 0 chr3 18697472 18697740 -199339418 - AluJo SINE Alu -7 305 38 21 71 0 0 chr3 18697948 18697990 -199339168 + AT_rich Low_complexity Low_complexity 1 42 0 22 56 0 0 chr3 18698420 18698456 -199338702 + AT_rich Low_complexity Low_complexity 1 36 0 219 292 62 0 chr3 18699445 18699510 -199337648 - MIR SINE MIR -110 152 84 291 157 0 0 chr3 18699708 18699759 -199337399 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1769 153 13 16 chr3 18700097 18700404 -199336754 + AluJb SINE Alu 1 306 -6 185 325 157 0 chr3 18701338 18701421 -199335737 + L2 LINE L2 3198 3293 -20 204 302 222 28 chr3 18701825 18702113 -199335045 - L2 LINE L2 -2 3311 2968 1789 168 0 14 chr3 18702291 18702609 -199334549 - AluJo SINE Alu 0 314 1 485 335 33 9 chr3 18702985 18703197 -199333961 - MIR SINE MIR -9 253 37 2024 130 0 0 chr3 18703524 18703800 -199333358 + AluSx SINE Alu 25 300 -12 301 267 10 69 chr3 18704016 18704117 -199333041 + MIR3 SINE MIR 86 180 -28 398 288 51 8 chr3 18704346 18704464 -199332694 + L2 LINE L2 3190 3312 -1 2126 93 3 56 chr3 18704511 18704646 -199332512 + AluSx SINE Alu 4 145 -167 2134 111 7 0 chr3 18704646 18704945 -199332213 + AluSq SINE Alu 3 303 0 2126 93 3 56 chr3 18704945 18705129 -199332029 + AluSx SINE Alu 145 307 -5 1065 246 64 25 chr3 18706327 18706734 -199330424 - HAL1 LINE L1 -426 2081 1659 292 275 0 2 chr3 18706766 18706867 -199330291 - L1MC4 LINE L1 0 8042 7896 261 0 0 0 chr3 18706887 18706916 -199330242 + (CA)n Simple_repeat Simple_repeat 2 30 0 1256 237 101 46 chr3 18706975 18707600 -199329558 - L1MC4 LINE L1 -294 7748 7090 849 160 0 18 chr3 18707600 18707832 -199329326 + (TCCA)n Simple_repeat Simple_repeat 1 227 0 1077 294 138 53 chr3 18707867 18709064 -199328094 - HAL1 LINE L1 -1206 1301 4 196 344 16 0 chr3 18709529 18709590 -199327568 - L2 LINE L2 -1 3312 3251 271 199 69 20 chr3 18710366 18710467 -199326691 + L1ME LINE L1 5490 5590 -574 270 314 37 0 chr3 18710477 18710630 -199326528 + L1ME4a LINE L1 5415 5582 -584 391 282 110 29 chr3 18710658 18710967 -199326191 - HAL1b LINE L1 -770 578 245 2427 77 0 0 chr3 18712682 18712982 -199324176 - AluY SINE Alu -11 300 1 216 0 0 0 chr3 18713225 18713249 -199323909 + (A)n Simple_repeat Simple_repeat 1 24 0 713 208 8 0 chr3 18713255 18713385 -199323773 + FLAM_A SINE Alu 1 131 -2 1281 170 0 4 chr3 18713387 18713634 -199323524 + L1MA7 LINE L1 3516 3761 -2385 438 76 0 45 chr3 18713634 18713700 -199323458 + Alu SINE Alu 234 296 -14 7014 158 44 4 chr3 18713700 18715680 -199321478 + L1MA7 LINE L1 3919 5980 -311 2372 124 22 10 chr3 18715680 18716082 -199321076 + L1PA16 LINE L1 5752 6158 -8 27 29 0 0 chr3 18716373 18716407 -199320751 + AT_rich Low_complexity Low_complexity 1 34 0 1755 108 32 25 chr3 18716411 18716727 -199320431 + L1MA7 LINE L1 5974 6291 0 24 0 0 0 chr3 18716761 18716785 -199320373 + AT_rich Low_complexity Low_complexity 1 24 0 596 297 43 9 chr3 18716831 18717158 -199320000 + L1ME4a LINE L1 5556 5893 -228 334 226 37 55 chr3 18717178 18717290 -199319868 + L1ME4a LINE L1 5950 6060 -61 2594 62 0 0 chr3 18717290 18717598 -199319560 + AluY SINE Alu 1 308 -3 334 226 37 55 chr3 18717598 18717649 -199319509 + L1ME4a LINE L1 6060 6110 -11 390 377 16 21 chr3 18717791 18717982 -199319176 + L2 LINE L2 2782 2971 -343 651 178 30 11 chr3 18719733 18719999 -199317159 - L1MA9 LINE L1 -22 6290 5924 679 167 40 0 chr3 18719999 18720100 -199317058 - MSTA LTR MaLR 0 428 323 902 69 21 35 chr3 18720100 18720245 -199316913 + MER30 DNA MER1_type 1 143 -87 279 0 0 0 chr3 18720245 18720276 -199316882 + (TG)n Simple_repeat Simple_repeat 2 32 0 2550 72 56 8 chr3 18720679 18721022 -199316136 - L1PB1 LINE L1 -2 6149 5824 411 21 0 0 chr3 18721022 18721070 -199316088 + (TG)n Simple_repeat Simple_repeat 2 49 0 270 0 0 0 chr3 18721069 18721099 -199316059 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 2550 72 56 8 chr3 18721070 18721130 -199316028 - L1PB1 LINE L1 -327 5824 5757 1453 136 6 71 chr3 18721130 18721271 -199315887 - L1PB1 LINE L1 -687 5464 5315 2385 74 0 7 chr3 18721271 18721568 -199315590 - AluSc SINE Alu -14 295 1 1453 136 6 71 chr3 18721568 18721924 -199315234 - L1PB1 LINE L1 -836 5315 4987 797 96 0 0 chr3 18721925 18722029 -199315129 + MER30 DNA MER1_type 127 230 0 607 121 174 23 chr3 18722029 18722160 -199314998 - MSTA LTR MaLR -93 335 185 1047 97 143 0 chr3 18723277 18723452 -199313706 - MSTA LTR MaLR -228 200 1 852 121 0 0 chr3 18723455 18723587 -199313571 - L1MA9 LINE L1 -387 5925 5794 180 0 0 0 chr3 18723587 18723607 -199313551 + (TATG)n Simple_repeat Simple_repeat 3 22 0 1851 151 3 18 chr3 18723608 18723946 -199313212 + L1M2 LINE L1 5451 5783 -529 2078 116 0 10 chr3 18724296 18724588 -199312570 - AluSq SINE Alu -24 289 1 22 0 0 0 chr3 18724589 18724611 -199312547 + AT_rich Low_complexity Low_complexity 1 22 0 2872 176 9 18 chr3 18724621 18725190 -199311968 + L1MB7 LINE L1 5621 6184 0 1740 206 48 7 chr3 18725201 18725720 -199311438 + L1MC3 LINE L1 7301 7908 -87 554 235 72 7 chr3 18725722 18725875 -199311283 + MIR SINE MIR 100 262 0 2521 47 0 3 chr3 18726228 18726529 -199310629 + AluY SINE Alu 1 300 -11 756 140 58 23 chr3 18726595 18726766 -199310392 - MER53 DNA DNA -12 177 1 2023 127 7 0 chr3 18726797 18727080 -199310078 + AluSx SINE Alu 7 291 -21 1749 121 36 78 chr3 18727139 18727445 -199309713 + AluJb SINE Alu 1 293 -19 270 217 33 0 chr3 18728050 18728110 -199309048 + GA-rich Low_complexity Low_complexity 4 65 0 771 107 8 8 chr3 18728219 18728341 -199308817 - L1MA1 LINE L1 0 6302 6181 360 0 0 0 chr3 18728384 18728424 -199308734 + (TC)n Simple_repeat Simple_repeat 1 40 0 233 313 0 0 chr3 18729289 18729337 -199307821 + L2 LINE L2 3231 3278 -35 2251 90 0 53 chr3 18729480 18729802 -199307356 + AluSx SINE Alu 1 305 -7 33 56 0 0 chr3 18733123 18733177 -199303981 + AT_rich Low_complexity Low_complexity 1 54 0 311 164 74 57 chr3 18733437 18733559 -199303599 - L1ME4a LINE L1 -1 6120 5997 2055 86 0 4 chr3 18733608 18733863 -199303295 - AluSc SINE Alu -12 297 44 1698 110 0 13 chr3 18733862 18734098 -199303060 - AluSp SINE Alu -80 233 1 * 200 59 29 0 chr3 18734134 18734168 -199302990 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2323 113 7 0 chr3 18734216 18734526 -199302632 - AluSx SINE Alu 0 312 1 182 196 52 113 chr3 18735431 18735528 -199301630 + L2 LINE L2 3173 3263 -9 22 35 0 0 chr3 18735828 18735857 -199301301 + AT_rich Low_complexity Low_complexity 1 29 0 2367 74 0 0 chr3 18736333 18736632 -199300526 - AluY SINE Alu -12 299 1 583 235 109 80 chr3 18736705 18736943 -199300215 + MIR SINE MIR 8 252 -10 243 0 0 0 chr3 18737407 18737434 -199299724 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1768 152 22 4 chr3 18737487 18737757 -199299401 - AluJo SINE Alu -35 277 3 490 292 88 95 chr3 18737775 18738049 -199299109 + L2 LINE L2 2987 3258 -14 2359 91 3 0 chr3 18738752 18739050 -199298108 + AluSq SINE Alu 1 299 -14 853 113 0 0 chr3 18739232 18739347 -199297811 - Alu SINE Alu -11 299 185 2274 106 0 0 chr3 18739558 18739861 -199297297 - AluSc SINE Alu -6 303 1 246 224 20 0 chr3 18739993 18740042 -199297116 - L2 LINE L2 0 3313 3264 225 269 77 0 chr3 18740008 18740060 -199297098 - MIR SINE MIR -10 252 197 * 1498 157 94 31 chr3 18740633 18741060 -199296098 + AluJo SINE Alu 1 445 0 331 350 209 6 chr3 18741084 18741247 -199295911 - MER91A DNA MER1_type 0 196 1 2049 136 30 104 chr3 18741357 18741455 -199295703 - L1MB7 LINE L1 -3 6181 6077 2315 94 3 3 chr3 18741455 18741762 -199295396 + AluSp SINE Alu 1 307 -6 2049 136 30 104 chr3 18741762 18741975 -199295183 - L1MB7 LINE L1 -107 6077 5926 2168 103 0 3 chr3 18741975 18742267 -199294891 - AluSg SINE Alu -11 299 9 2049 136 30 104 chr3 18742267 18742520 -199294638 - L1MB7 LINE L1 -258 5926 5656 201 230 0 0 chr3 18742588 18742662 -199294496 + T-rich Low_complexity Low_complexity 1 74 0 2436 75 3 3 chr3 18743849 18744154 -199293004 - AluSp SINE Alu -8 305 1 23 0 0 0 chr3 18744156 18744179 -199292979 + AT_rich Low_complexity Low_complexity 1 23 0 1466 101 3 221 chr3 18744179 18744546 -199292612 - AluSx SINE Alu -14 288 2 562 231 41 103 chr3 18744588 18744831 -199292327 - L2 LINE L2 -3 3310 3083 321 358 33 40 chr3 18744902 18745053 -199292105 - L2 LINE L2 -2 3270 3121 382 214 97 13 chr3 18745633 18745787 -199291371 + L1MC5 LINE L1 7734 7900 -61 224 236 0 0 chr3 18746313 18746368 -199290790 + (TA)n Simple_repeat Simple_repeat 1 55 0 516 72 0 0 chr3 18746368 18746437 -199290721 + (TG)n Simple_repeat Simple_repeat 2 70 0 537 153 0 0 chr3 18746440 18746525 -199290633 - FRAM SINE Alu -25 151 67 413 188 62 31 chr3 18746532 18746628 -199290530 - MIR SINE MIR -108 154 56 490 229 55 37 chr3 18747219 18747437 -199289721 - AluSq SINE Alu -1 312 91 2046 103 50 17 chr3 18747555 18747857 -199289301 - AluSx SINE Alu 0 312 1 428 248 40 10 chr3 18749025 18749126 -199288032 + L2 LINE L2 3169 3272 0 449 220 104 54 chr3 18749145 18749386 -199287772 + MER112 DNA MER1_type 1 253 -3 3953 164 65 44 chr3 18749596 18749823 -199287335 + L1MB7 LINE L1 4941 5162 -1022 734 195 0 0 chr3 18749823 18749979 -199287179 + FLAM_A SINE Alu 2 157 0 3953 164 65 44 chr3 18749979 18750233 -199286925 + L1MB7 LINE L1 5162 5409 -775 1466 143 5 5 chr3 18750233 18750456 -199286702 + AluJo SINE Alu 81 303 -9 3953 164 65 44 chr3 18750456 18751111 -199286047 + L1MB7 LINE L1 5409 6107 -77 2105 106 31 3 chr3 18751111 18751403 -199285755 - AluSx SINE Alu -12 300 1 3953 164 65 44 chr3 18751403 18751483 -199285675 + L1MB7 LINE L1 6107 6184 0 1813 154 0 46 chr3 18751486 18751811 -199285347 + AluJb SINE Alu 1 310 -2 32 75 0 0 chr3 18752914 18752981 -199284177 + GC_rich Low_complexity Low_complexity 1 67 0 663 196 15 8 chr3 18803937 18804070 -199233088 - MER94 DNA DNA 0 134 1 289 325 74 48 chr3 18804675 18804906 -199232252 + L3b LINE CR1 1150 1386 -197 375 294 29 77 chr3 18805498 18805668 -199231490 - MIR3 SINE MIR -6 202 41 1280 194 94 7 chr3 18805698 18806007 -199231151 - MER2 DNA MER2_type -6 339 4 248 288 25 12 chr3 18806276 18806356 -199230802 + MIR SINE MIR 46 126 -82 213 231 115 0 chr3 18807185 18807237 -199229921 - MIR SINE MIR -101 107 50 204 321 33 60 chr3 18807445 18807629 -199229529 - L2 LINE L2 -236 3036 2858 953 317 71 14 chr3 18807674 18808192 -199228966 - L2 LINE L2 -576 2738 2191 1908 143 10 10 chr3 18808902 18809196 -199227962 + AluJb SINE Alu 1 294 -18 207 0 0 0 chr3 18809298 18809321 -199227837 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 473 295 118 13 chr3 18809368 18809570 -199227588 - MIR SINE MIR -25 237 19 664 162 0 0 chr3 18809617 18809728 -199227430 - AluJb SINE Alu -11 301 191 2174 128 0 6 chr3 18810374 18810686 -199226472 - AluSx SINE Alu -2 310 1 248 233 200 33 chr3 18810717 18810837 -199226321 + MIR SINE MIR 72 211 -51 1242 225 24 30 chr3 18811215 18811548 -199225610 + L1MB7 LINE L1 5853 6183 -1 462 292 12 24 chr3 18811660 18811821 -199225337 + MIR3 SINE MIR 21 180 -28 21 0 0 0 chr3 18812464 18812485 -199224673 + AT_rich Low_complexity Low_complexity 1 21 0 2373 89 0 0 chr3 18812957 18813250 -199223908 + AluSg SINE Alu 1 293 -17 682 235 60 125 chr3 18813466 18813581 -199223577 + L1MC4 LINE L1 7030 7151 -891 2064 141 0 3 chr3 18813581 18813878 -199223280 + AluJb SINE Alu 3 298 -14 682 235 60 125 chr3 18813878 18814526 -199222632 + L1MC4 LINE L1 7151 7737 -305 257 279 108 13 chr3 18814679 18814837 -199222321 + L1ME4a LINE L1 5938 6110 -11 361 175 278 0 chr3 18815483 18815580 -199221578 + MIR SINE MIR 51 174 -88 339 278 40 53 chr3 18815854 18815915 -199221243 + MIR SINE MIR 103 163 -99 2139 134 0 0 chr3 18815915 18816214 -199220944 - AluSx SINE Alu -13 299 1 339 278 40 53 chr3 18816214 18816303 -199220855 + MIR SINE MIR 163 251 -11 550 257 7 29 chr3 18817592 18817732 -199219426 + MIR3 SINE MIR 30 166 -42 323 273 114 114 chr3 18818455 18818631 -199218527 - MIR3 SINE MIR -17 191 16 1890 156 0 7 chr3 18818695 18818990 -199218168 - AluJo SINE Alu -18 294 2 23 54 0 0 chr3 18819003 18819040 -199218118 + AT_rich Low_complexity Low_complexity 1 37 0 811 134 0 31 chr3 18819126 18819253 -199217905 + AluSg/x SINE Alu 169 291 -19 656 171 0 0 chr3 18819259 18819370 -199217788 + FLAM_A SINE Alu 1 111 -31 27 0 0 0 chr3 18819373 18819400 -199217758 + AT_rich Low_complexity Low_complexity 1 27 0 260 327 84 9 chr3 18821200 18821307 -199215851 + L2 LINE L2 3196 3310 -3 204 128 77 0 chr3 18821559 18821598 -199215560 - MIR SINE MIR -5 257 216 * 225 81 81 0 chr3 18821564 18821601 -199215557 - L2 LINE L2 -16 3256 3217 325 326 0 0 chr3 18821644 18821733 -199215425 + L2 LINE L2 3184 3272 0 224 348 77 39 chr3 18824164 18824319 -199212839 + L2 LINE L2 3080 3240 -32 229 317 0 0 chr3 18824330 18824390 -199212768 - MIR3 SINE MIR -33 175 116 308 284 123 0 chr3 18826275 18826421 -199210737 + MIR SINE MIR 41 203 -59 2364 79 0 29 chr3 18826519 18826835 -199210323 + AluY SINE Alu 1 307 -4 1865 158 0 10 chr3 18827191 18827489 -199209669 - AluJb SINE Alu -17 295 1 267 360 87 26 chr3 18828765 18829018 -199208140 + L2 LINE L2 2791 3057 -215 919 279 82 47 chr3 18829043 18829806 -199207352 + L2 LINE L2 2520 3313 0 997 209 61 15 chr3 18830494 18830778 -199206380 - MER93a LTR ERV1 -60 342 1 256 224 122 31 chr3 18830795 18830893 -199206265 - MARNA DNA Mariner -236 350 244 2240 103 3 0 chr3 18831354 18831656 -199205502 - AluSx SINE Alu -9 303 1 267 360 87 26 chr3 18832932 18833185 -199203973 + L2 LINE L2 2791 3057 -215 919 279 82 47 chr3 18833210 18833973 -199203185 + L2 LINE L2 2520 3313 0 186 326 31 71 chr3 18835187 18835285 -199201873 + L2 LINE L2 2990 3083 -189 2056 134 10 0 chr3 18835886 18836192 -199200966 - AluSx SINE Alu -3 309 1 770 157 8 15 chr3 18836397 18836531 -199200627 - FLAM_C SINE Alu -10 133 1 426 167 152 80 chr3 18836704 18836842 -199200316 - L1ME3A LINE L1 -3 6167 6020 3538 249 81 24 chr3 18836843 18838457 -199198701 - L1ME3A LINE L1 -193 5977 4457 1940 140 0 7 chr3 18838457 18838777 -199198381 + AluSx SINE Alu 2 319 0 3538 249 81 24 chr3 18838777 18839000 -199198158 - L1ME3A LINE L1 -1713 4457 4248 186 43 0 0 chr3 18839000 18839023 -199198135 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3538 249 81 24 chr3 18839023 18839129 -199198029 - L1ME3A LINE L1 -1922 4248 3916 1574 162 66 11 chr3 18839153 18839425 -199197733 - AluJb SINE Alu -25 287 1 1620 134 0 8 chr3 18839860 18840133 -199197025 + AluSx SINE Alu 49 319 0 812 227 68 65 chr3 18840155 18840356 -199196802 - L1M4 LINE L1 -1922 4224 4020 186 43 0 0 chr3 18840356 18840379 -199196779 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 812 227 68 65 chr3 18840379 18840485 -199196673 - L1M4 LINE L1 -2126 4020 3916 1574 162 66 11 chr3 18840509 18840781 -199196377 - AluJb SINE Alu -25 287 1 7540 197 37 20 chr3 18841444 18842510 -199194648 - L1MC1 LINE L1 0 6333 5287 2165 138 15 6 chr3 18842510 18842844 -199194314 - MER1B DNA MER1_type 0 337 1 7540 197 37 20 chr3 18842844 18843138 -199194020 - L1MC1 LINE L1 -1046 5287 4999 240 35 0 0 chr3 18843138 18843167 -199193991 + (TTA)n Simple_repeat Simple_repeat 3 31 0 7540 197 37 20 chr3 18843167 18844798 -199192360 - L1MC1 LINE L1 -1334 4999 3287 1622 169 0 83 chr3 18845128 18845442 -199191716 + AluJb SINE Alu 1 288 -24 27 0 0 0 chr3 18845448 18845475 -199191683 + AT_rich Low_complexity Low_complexity 1 27 0 2369 103 0 0 chr3 18845732 18846044 -199191114 - AluSx SINE Alu 0 312 1 314 314 16 16 chr3 18846109 18846230 -199190928 + MIR SINE MIR 56 176 -86 2388 201 108 58 chr3 18846686 18846772 -199190386 - HAL1 LINE L1 -109 2398 2318 1818 171 0 0 chr3 18846772 18847059 -199190099 + AluJb SINE Alu 1 287 -25 2388 201 108 58 chr3 18847059 18847896 -199189262 - HAL1 LINE L1 -189 2318 1429 189 353 0 69 chr3 18847992 18848094 -199189064 + L3b LINE CR1 1203 1297 -286 417 223 69 39 chr3 18848185 18848315 -199188843 - MER103 DNA DNA -25 141 8 345 276 154 16 chr3 18848405 18848528 -199188630 + L3b LINE CR1 1375 1514 -69 532 267 68 0 chr3 18848658 18848804 -199188354 - MIR SINE MIR 0 262 107 348 260 142 47 chr3 18849261 18849430 -199187728 + MIR3 SINE MIR 17 201 -7 188 205 26 0 chr3 18849766 18849805 -199187353 + L2 LINE L2 3265 3304 -9 724 308 19 35 chr3 18849866 18850126 -199187032 + MIR SINE MIR 2 257 -5 282 335 89 63 chr3 18851235 18851551 -199185607 - L2 LINE L2 -48 3224 2901 1544 154 16 87 chr3 18851759 18851879 -199185279 + L1MC2 LINE L1 5989 6116 -228 2211 114 7 0 chr3 18851879 18852186 -199184972 + AluSx SINE Alu 1 309 -3 1544 154 16 87 chr3 18852186 18852435 -199184723 + L1MC2 LINE L1 6116 6332 -12 21 0 0 0 chr3 18852520 18852541 -199184617 + AT_rich Low_complexity Low_complexity 1 21 0 704 187 0 0 chr3 18852667 18852790 -199184368 + FLAM_C SINE Alu 1 123 -20 225 0 0 0 chr3 18852808 18852833 -199184325 + (GA)n Simple_repeat Simple_repeat 1 25 0 2283 103 3 0 chr3 18853511 18853811 -199183347 - AluSp SINE Alu -12 301 1 366 271 12 0 chr3 18854128 18854213 -199182945 + MIR SINE MIR 66 151 -111 337 307 0 0 chr3 18854352 18854440 -199182718 - L2 LINE L2 -4 3268 3181 220 194 32 16 chr3 18854815 18854877 -199182281 + T-rich Low_complexity Low_complexity 3 65 0 27 62 0 0 chr3 18855077 18855125 -199182033 + AT_rich Low_complexity Low_complexity 1 48 0 5445 110 30 93 chr3 18855315 18856525 -199180633 + L1MA9 LINE L1 5143 6263 -49 2228 102 6 10 chr3 18856554 18856867 -199180291 - AluSx SINE Alu 0 312 1 227 109 109 0 chr3 18856867 18856922 -199180236 + L1MA9 LINE L1 6252 6312 0 234 156 0 0 chr3 18857704 18857749 -199179409 + CT-rich Low_complexity Low_complexity 2 46 0 24 32 0 0 chr3 18858498 18858529 -199178629 + AT_rich Low_complexity Low_complexity 1 31 0 214 243 86 14 chr3 18858651 18858721 -199178437 - MIR SINE MIR -109 153 79 699 195 0 0 chr3 18859144 18859267 -199177891 - FRAM SINE Alu -16 160 38 275 298 129 32 chr3 18859349 18859473 -199177685 - MIR3 SINE MIR -38 170 35 249 33 0 0 chr3 18859476 18859506 -199177652 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 313 240 103 69 chr3 18859555 18859730 -199177428 - MIR SINE MIR -58 204 24 183 307 40 40 chr3 18860137 18860212 -199176946 - MIR SINE MIR -6 256 182 240 154 0 154 chr3 18860225 18860250 -199176908 + MIR3 SINE MIR 124 151 -57 1818 162 0 7 chr3 18860250 18860534 -199176624 + AluJo SINE Alu 1 282 -30 258 32 0 0 chr3 18860537 18860568 -199176590 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 240 154 0 154 chr3 18860568 18860603 -199176555 + MIR3 SINE MIR 153 178 -30 198 307 53 0 chr3 18860719 18860794 -199176364 + MIR3 SINE MIR 121 199 -9 218 288 30 15 chr3 18862029 18862095 -199175063 - MIR SINE MIR -14 248 182 976 196 98 0 chr3 18862197 18862401 -199174757 + Charlie1 DNA MER1_type 1 224 -2537 654 187 0 0 chr3 18862402 18862525 -199174633 + Charlie1 DNA MER1_type 2625 2747 -14 768 160 102 16 chr3 18863984 18864171 -199172987 - LTR37B LTR ERV1 -55 413 211 6878 71 9 0 chr3 18864171 18865366 -199171792 - L1PA6 LINE L1 0 6154 4957 257 266 37 34 chr3 18866173 18866435 -199170723 + L1MEd LINE L1 788 1072 -5081 236 311 11 0 chr3 18866701 18866791 -199170367 + L1MEd LINE L1 1048 1138 -4981 343 277 122 5 chr3 18866841 18867029 -199170129 + HAL1 LINE L1 1365 1574 -933 1855 162 0 19 chr3 18867061 18867375 -199169783 + AluSx SINE Alu 1 308 -4 806 303 143 8 chr3 18867562 18868038 -199169120 + L1ME2 LINE L1 5412 5951 -213 1881 142 3 35 chr3 18868090 18868406 -199168752 - AluJb SINE Alu -6 306 1 234 235 39 0 chr3 18868533 18868584 -199168574 - MIR SINE MIR -59 149 97 816 271 58 96 chr3 18868616 18869180 -199167978 - L2 LINE L2 -46 3267 2253 501 273 97 30 chr3 18869841 18870006 -199167152 - MIR3 SINE MIR -17 191 16 198 0 0 0 chr3 18870646 18870668 -199166490 + (T)n Simple_repeat Simple_repeat 1 22 0 2201 128 0 0 chr3 18873564 18873869 -199163289 - AluSx SINE Alu -1 311 7 23 0 0 0 chr3 18873882 18873905 -199163253 + AT_rich Low_complexity Low_complexity 1 23 0 1941 164 0 3 chr3 18873928 18874233 -199162925 + AluJb SINE Alu 1 304 -8 337 223 287 0 chr3 18874354 18874448 -199162710 - FLAM_A SINE Alu -12 121 1 2362 68 0 0 chr3 18874832 18875160 -199161998 - AluY SINE Alu 0 328 1 1010 178 0 17 chr3 18876890 18877070 -199160088 + FRAM SINE Alu 1 176 0 433 152 11 11 chr3 18877072 18877164 -199159994 + GA-rich Low_complexity Low_complexity 4 95 0 1405 174 92 32 chr3 18877170 18877452 -199159706 + AluJo SINE Alu 1 299 -13 539 305 12 24 chr3 18878238 18878402 -199158756 - MIR3 SINE MIR -21 187 26 211 229 0 0 chr3 18878733 18878781 -199158377 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 259 288 0 0 chr3 18879587 18879646 -199157512 + L2 LINE L2 3250 3308 -5 186 301 184 7 chr3 18879884 18880020 -199157138 - L2 LINE L2 -5 3308 3149 1054 184 15 5 chr3 18880266 18880462 -199156696 + MER2 DNA MER2_type 1 198 -147 1205 121 0 0 chr3 18880462 18880628 -199156530 + AluJb SINE Alu 1 166 -146 652 137 0 0 chr3 18881007 18881136 -199156022 - AluJo SINE Alu 0 339 211 1182 196 0 10 chr3 18881195 18881399 -199155759 - AluJo SINE Alu -104 208 7 1360 156 0 26 chr3 18881536 18881767 -199155391 - AluJo SINE Alu -87 225 1 476 218 0 0 chr3 18881785 18881863 -199155295 + MER2 DNA MER2_type 268 345 0 375 272 107 0 chr3 18881969 18882072 -199155086 - L2 LINE L2 -27 3286 3173 2054 119 3 3 chr3 18882633 18882919 -199154239 + AluSx SINE Alu 1 286 -26 582 83 0 0 chr3 18882847 18882920 -199154238 + AluSg/x SINE Alu 213 306 0 190 0 0 0 chr3 18882920 18882941 -199154217 + (TAAAA)n Simple_repeat Simple_repeat 5 45 0 205 237 0 0 chr3 18883000 18883038 -199154120 - L2 LINE L2 -90 3182 3145 230 196 0 0 chr3 18883641 18883687 -199153471 - L2 LINE L2 -237 3035 2990 1625 105 0 0 chr3 18884644 18884873 -199152285 - AluSg/x SINE Alu -5 305 77 265 263 139 34 chr3 18885168 18885263 -199151895 + MIR3 SINE MIR 20 132 -76 2160 78 0 7 chr3 18885263 18885572 -199151586 - AluSc SINE Alu 0 307 1 265 263 139 34 chr3 18885572 18885619 -199151539 + MIR3 SINE MIR 132 173 -35 552 273 0 8 chr3 18886065 18886186 -199150972 - MIR SINE MIR -59 149 30 697 174 56 25 chr3 18886670 18886831 -199150327 - FRAM SINE Alu -1 175 10 185 348 87 26 chr3 18887153 18887268 -199149890 + L2 LINE L2 3150 3271 -1 231 293 191 20 chr3 18889717 18889864 -199147294 + MIR3 SINE MIR 37 208 0 452 236 51 67 chr3 18890763 18890941 -199146217 + MER69A DNA AcHobo 1 175 -2 2131 80 13 35 chr3 18891639 18891950 -199145208 + AluSq SINE Alu 1 304 -9 704 163 0 59 chr3 18892443 18892578 -199144580 + FLAM_C SINE Alu 1 127 -6 25 75 0 0 chr3 18892578 18892631 -199144527 + AT_rich Low_complexity Low_complexity 1 53 0 243 339 46 28 chr3 18893402 18893511 -199143647 - MIR SINE MIR -76 132 22 22 35 0 0 chr3 18894039 18894068 -199143090 + AT_rich Low_complexity Low_complexity 1 29 0 2014 139 3 0 chr3 18894209 18894518 -199142640 + AluSx SINE Alu 1 310 -2 214 137 0 39 chr3 18895519 18895570 -199141588 + (TTTTC)n Simple_repeat Simple_repeat 3 51 0 664 137 0 0 chr3 18895983 18896112 -199141046 - AluJo SINE Alu 0 339 211 1104 196 0 10 chr3 18896171 18896375 -199140783 - AluJo SINE Alu -104 208 7 951 273 70 0 chr3 18896665 18896907 -199140251 - MIR SINE MIR 0 262 4 2350 96 0 0 chr3 18897043 18897356 -199139802 - AluSq SINE Alu 0 313 1 1775 113 44 22 chr3 18897566 18897876 -199139282 - AluSg SINE Alu 0 318 3 45 34 0 0 chr3 18897902 18897961 -199139197 + AT_rich Low_complexity Low_complexity 1 59 0 216 278 0 0 chr3 18898180 18898234 -199138924 + (CATA)n Simple_repeat Simple_repeat 3 56 0 209 278 19 19 chr3 18900241 18900295 -199136863 + L2 LINE L2 3217 3270 -2 661 319 4 62 chr3 18900312 18900588 -199136570 - MIR SINE MIR 0 262 3 2066 140 0 6 chr3 18900709 18901023 -199136135 + AluJo SINE Alu 1 312 0 410 247 237 21 chr3 18902872 18903058 -199134100 + MIR SINE MIR 31 256 -6 225 276 0 52 chr3 18904671 18904787 -199132371 + A-rich Low_complexity Low_complexity 1 110 0 596 274 85 33 chr3 18904831 18905043 -199132115 - MIR SINE MIR -26 236 14 * 797 209 43 12 chr3 18905030 18905193 -199131965 + MER5B DNA MER1_type 11 178 0 300 303 52 42 chr3 18905667 18905826 -199131332 - MIR SINE MIR -69 193 21 304 300 62 23 chr3 18907007 18907137 -199130021 - MIR3 SINE MIR -10 198 64 661 182 23 15 chr3 18907547 18907679 -199129479 + FLAM_C SINE Alu 1 133 0 201 288 51 0 chr3 18908441 18908500 -199128658 - L2 LINE L2 -70 3202 3141 649 289 83 45 chr3 18908519 18908761 -199128397 + MIR SINE MIR 1 251 -11 277 348 16 71 chr3 18908855 18909108 -199128050 - L2 LINE L2 -218 3054 2816 532 286 177 38 chr3 18909313 18909769 -199127389 + L1M4 LINE L1 2809 3200 -2946 1708 165 25 0 chr3 18909769 18910054 -199127104 + AluJo SINE Alu 1 292 -20 532 286 177 38 chr3 18910054 18911033 -199126125 + L1M4 LINE L1 3200 4443 -1703 2202 115 0 0 chr3 18911367 18911679 -199125479 + AluSx SINE Alu 1 312 0 269 153 0 17 chr3 18912538 18912597 -199124561 + CT-rich Low_complexity Low_complexity 2 59 0 1256 185 80 0 chr3 18913001 18913277 -199123881 + AluJo SINE Alu 2 299 -13 1297 84 90 0 chr3 18913855 18913998 -199123160 + MER107 DNA MER1_type 3 166 -31 195 42 0 0 chr3 18913998 18914022 -199123136 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 1297 84 90 0 chr3 18914022 18914056 -199123102 + MER107 DNA MER1_type 166 196 -1 180 304 128 20 chr3 18915970 18916072 -199121086 - L2 LINE L2 -18 3254 3142 222 346 77 0 chr3 18916372 18916476 -199120682 - L3 LINE CR1 -48 1529 1418 2256 105 0 0 chr3 18916839 18917143 -199120015 + AluSx SINE Alu 1 304 -8 267 289 13 0 chr3 18917156 18917232 -199119926 + MIR SINE MIR 186 262 0 566 314 39 39 chr3 18917251 18917480 -199119678 + MIR SINE MIR 28 256 -6 268 261 34 23 chr3 18918106 18918194 -199118964 + MIR SINE MIR 53 141 -67 276 254 99 0 chr3 18918232 18918303 -199118855 + MIR SINE MIR 114 191 -71 276 254 154 85 chr3 18918333 18918463 -199118695 - MIR SINE MIR -68 140 1 551 284 48 24 chr3 18918480 18918688 -199118470 + MIR SINE MIR 1 213 -49 266 234 219 31 chr3 18918823 18918951 -199118207 + MIR3 SINE MIR 43 194 -14 1053 266 99 27 chr3 18919588 18920072 -199117086 - LTR33 LTR ERVL -2 519 1 194 267 99 20 chr3 18920105 18920206 -199116952 - MIR SINE MIR -142 120 12 21 71 0 0 chr3 18920463 18920505 -199116653 + AT_rich Low_complexity Low_complexity 1 42 0 195 354 94 44 chr3 18920868 18921049 -199116109 - L2 LINE L2 -10 3262 3073 * 387 299 85 17 chr3 18921033 18921210 -199115948 + MIR SINE MIR 29 217 -45 399 308 130 43 chr3 18921376 18922133 -199115025 - L2 LINE L2 -190 3082 2245 266 253 133 0 chr3 18922375 18922458 -199114700 - MIR SINE MIR -70 192 99 236 277 8 92 chr3 18922965 18923095 -199114063 + MIR SINE MIR 111 229 -33 222 62 0 0 chr3 18923736 18923768 -199113390 + (TC)n Simple_repeat Simple_repeat 2 33 0 230 374 61 10 chr3 18923872 18923971 -199113187 - L2 LINE L2 -1 3271 3168 1454 249 59 32 chr3 18924068 18924509 -199112649 + LTR16C LTR ERVL 36 488 -3 203 369 78 0 chr3 18924589 18924675 -199112483 - L2 LINE L2 -25 3247 3150 1672 126 81 35 chr3 18924675 18924960 -199112198 + AluSg SINE Alu 1 298 -12 203 369 78 0 chr3 18924960 18924976 -199112182 - L2 LINE L2 -122 3150 3137 243 146 0 0 chr3 18924976 18925017 -199112141 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 1889 155 10 0 chr3 18925027 18925331 -199111827 + AluJb SINE Alu 1 307 -5 378 177 21 10 chr3 18925342 18925438 -199111720 + GA-rich Low_complexity Low_complexity 4 100 0 479 299 58 102 chr3 18925440 18925591 -199111567 - L2 LINE L2 -113 3159 3003 2183 105 0 0 chr3 18925591 18925895 -199111263 - AluSx SINE Alu -8 304 1 479 299 58 102 chr3 18925895 18926087 -199111071 - L2 LINE L2 -269 3003 2831 867 194 61 0 chr3 18926176 18926341 -199110817 + FAM SINE Alu 1 175 0 454 161 46 8 chr3 18926363 18926493 -199110665 + GA-rich Low_complexity Low_complexity 4 138 0 366 95 18 28 chr3 18926660 18926735 -199110423 - Alu SINE Alu -251 50 1 319 355 24 24 chr3 18926735 18926901 -199110257 - L2 LINE L2 -276 2996 2831 867 194 61 0 chr3 18926990 18927155 -199110003 + FAM SINE Alu 1 175 0 201 256 0 0 chr3 18927159 18927198 -199109960 + polypurine Low_complexity Low_complexity 3 41 0 806 103 16 54 chr3 18927198 18927383 -199109775 + (GGAA)n Simple_repeat Simple_repeat 2 179 0 675 115 68 0 chr3 18927383 18927531 -199109627 + GA-rich Low_complexity Low_complexity 2 159 0 804 87 22 54 chr3 18927538 18927723 -199109435 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 1846 123 28 3 chr3 18928194 18928479 -199108679 + AluJo SINE Alu 5 296 -16 460 253 32 26 chr3 18928668 18928822 -199108336 - MIR SINE MIR -43 219 65 448 291 75 20 chr3 18928948 18929147 -199108011 - MLT1K LTR MaLR -343 245 36 452 203 17 34 chr3 18929243 18929361 -199107797 - LTR33 LTR ERVL -7 514 399 774 241 132 34 chr3 18929392 18929687 -199107471 - LTR33 LTR ERVL -197 324 1 1384 179 108 14 chr3 18930361 18930385 -199106773 - MLT1F LTR MaLR -211 331 311 1642 212 50 16 chr3 18930385 18930762 -199106396 + MLT1B LTR MaLR 1 390 0 1384 179 108 14 chr3 18930762 18931034 -199106124 - MLT1F LTR MaLR -231 311 7 289 267 100 0 chr3 18931473 18931563 -199105595 - MIR3 SINE MIR -23 185 87 536 312 35 20 chr3 18931573 18931775 -199105383 - MIR SINE MIR -10 252 48 447 220 40 90 chr3 18932250 18932427 -199104731 - MIR3 SINE MIR -12 196 29 349 353 53 11 chr3 18932536 18932723 -199104435 + MIR SINE MIR 2 196 -66 765 148 23 0 chr3 18932725 18932853 -199104305 + FLAM_A SINE Alu 2 132 -1 611 109 10 0 chr3 18932936 18933037 -199104121 - L1MA8 LINE L1 -1 6290 6189 511 265 40 13 chr3 18933273 18933424 -199103734 + MIR SINE MIR 36 190 -72 480 293 26 47 chr3 18933579 18933811 -199103347 - MIR SINE MIR -16 246 20 242 177 242 0 chr3 18933830 18933892 -199103266 + L2 LINE L2 3194 3270 -2 558 289 83 45 chr3 18934734 18934976 -199102182 + MIR SINE MIR 1 251 -11 217 348 16 71 chr3 18935070 18935323 -199101835 - L2 LINE L2 -218 3054 2816 557 258 77 35 chr3 18935560 18935936 -199101222 + L1M4 LINE L1 2853 3244 -2902 1822 165 25 0 chr3 18935981 18936266 -199100892 + AluJo SINE Alu 1 292 -20 648 286 92 40 chr3 18936742 18937245 -199099913 + L1M4 LINE L1 3915 4443 -1703 2071 122 10 0 chr3 18937579 18937873 -199099285 + AluSx SINE Alu 1 297 -15 378 0 0 0 chr3 18937873 18937915 -199099243 + (TG)n Simple_repeat Simple_repeat 1 42 0 2210 96 0 34 chr3 18938492 18938814 -199098344 + AluY SINE Alu 1 311 0 368 252 35 35 chr3 18938814 18938929 -199098229 - MIR SINE MIR -123 139 25 587 179 207 90 chr3 18939965 18940255 -199096903 - MER33 DNA MER1_type 0 324 1 534 133 0 0 chr3 18940282 18940365 -199096793 + AluY SINE Alu 217 299 -12 2389 83 3 3 chr3 18940902 18941204 -199095954 + AluY SINE Alu 1 302 -9 187 241 69 0 chr3 18941253 18941311 -199095847 + MIR SINE MIR 91 152 -110 3427 123 31 0 chr3 18941603 18942084 -199095074 + MER1A DNA MER1_type 34 529 0 2366 88 7 0 chr3 18942510 18942815 -199094343 - AluSx SINE Alu -3 309 3 447 309 90 5 chr3 18942851 18943039 -199094119 - L1MEc LINE L1 -6098 298 95 207 0 0 0 chr3 18943041 18943064 -199094094 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1161 226 89 43 chr3 18943112 18943262 -199093896 - L1MEc LINE L1 -5222 1174 1032 2082 123 0 0 chr3 18943262 18943559 -199093599 - AluSp SINE Alu 0 302 6 1161 226 89 43 chr3 18943559 18943899 -199093259 - L1MEc LINE L1 -5364 1032 660 1143 163 69 0 chr3 18943936 18944138 -199093020 - AluJo SINE Alu -12 300 85 2366 92 3 13 chr3 18944138 18944452 -199092706 - AluSp SINE Alu -2 311 1 1088 116 29 6 chr3 18944670 18944842 -199092316 + MER47A DNA MER2_type 70 245 -121 850 117 17 0 chr3 18944845 18944965 -199092193 + AluSg/x SINE Alu 179 300 -12 304 156 0 0 chr3 18944968 18945013 -199092145 + MER47A DNA MER2_type 322 366 0 291 303 103 7 chr3 18945041 18945196 -199091962 - MIR SINE MIR -73 189 20 2204 103 0 32 chr3 18945818 18946129 -199091029 - AluSg SINE Alu -9 301 1 192 40 0 0 chr3 18947547 18947572 -199089586 + (A)n Simple_repeat Simple_repeat 1 25 0 289 279 72 9 chr3 18947644 18947755 -199089403 + MIR SINE MIR 24 141 -67 1919 151 3 3 chr3 18948143 18948435 -199088723 + AluSx SINE Alu 2 293 -19 2062 122 0 23 chr3 18948442 18948746 -199088412 + AluSx SINE Alu 1 297 -15 2197 90 13 20 chr3 18949229 18949529 -199087629 + AluSq SINE Alu 1 298 -15 2001 130 0 33 chr3 18950648 18950949 -199086209 - AluSg SINE Alu -19 291 1 1742 142 54 0 chr3 18950953 18951241 -199085917 - AluSx SINE Alu 0 310 9 1692 171 0 18 chr3 18951242 18951528 -199085630 - AluJo SINE Alu -10 302 22 306 239 25 0 chr3 18951528 18951608 -199085550 - L1M4c LINE L1 -4556 1826 1689 * 3525 138 75 3 chr3 18951603 18952212 -199084946 + L1MC1 LINE L1 5453 6105 -228 318 133 0 50 chr3 18952213 18952273 -199084885 + AluJo SINE Alu 87 143 -159 * 1677 116 4 4 chr3 18952265 18952507 -199084651 + MER50 LTR ERV1 493 734 0 374 124 49 0 chr3 18952584 18952656 -199084502 - MER4-int LTR ERV1 -989 5609 5545 563 121 0 0 chr3 18952866 18952949 -199084209 - AluS SINE Alu -228 84 2 21 0 0 0 chr3 18953229 18953250 -199083908 + AT_rich Low_complexity Low_complexity 1 21 0 239 196 0 36 chr3 18953821 18953877 -199083281 - L2 LINE L2 -26 3287 3234 2323 92 0 0 chr3 18954436 18954720 -199082438 + AluSx SINE Alu 11 294 -18 1297 155 18 0 chr3 18954721 18954940 -199082218 - L1PA14 LINE L1 -17 6144 5922 662 200 21 14 chr3 18955043 18955188 -199081970 + AluSc SINE Alu 154 299 -10 3235 166 21 25 chr3 18955189 18955821 -199081337 + L1MB7 LINE L1 5482 6110 -74 2166 103 0 63 chr3 18955883 18956202 -199080956 - AluSx SINE Alu -13 299 1 394 83 83 0 chr3 18956205 18956265 -199080893 + L1MB7 LINE L1 6114 6178 -6 1455 149 42 54 chr3 18957035 18957147 -199080011 + L1MB3 LINE L1 5553 5665 -515 2127 97 14 3 chr3 18957147 18957435 -199079723 + AluSq SINE Alu 1 291 -22 1455 149 42 54 chr3 18957435 18957605 -199079553 + L1MB3 LINE L1 5665 5836 -344 2085 107 14 3 chr3 18957605 18957896 -199079262 + AluSx SINE Alu 1 294 -18 1455 149 42 54 chr3 18957896 18957957 -199079201 + L1MB3 LINE L1 5836 5896 -284 2267 112 0 22 chr3 18958935 18959249 -199077909 - AluSx SINE Alu -5 307 1 308 232 89 35 chr3 18959328 18959497 -199077661 - L1MC5 LINE L1 -169 7873 7603 317 158 122 33 chr3 18959516 18959648 -199077510 - FLAM_C SINE Alu -10 123 1 288 174 0 0 chr3 18960337 18960383 -199076775 + Alu SINE Alu 1 46 -257 223 268 14 0 chr3 18960722 18960793 -199076365 + T-rich Low_complexity Low_complexity 3 74 0 1235 164 5 19 chr3 18960963 18961171 -199075987 - AluJb SINE Alu -107 205 1 1535 173 76 14 chr3 18961194 18961483 -199075675 - AluJo SINE Alu -3 309 3 289 213 39 8 chr3 18962676 18962756 -199074402 + L1MC/D LINE L1 5409 5490 -684 2198 104 7 20 chr3 18962756 18963055 -199074103 + AluSx SINE Alu 1 295 -17 289 213 39 8 chr3 18963055 18963066 -199074092 + L1MC/D LINE L1 5490 5499 -675 2032 136 17 0 chr3 18963381 18963682 -199073476 - AluSx SINE Alu -6 306 1 207 0 0 0 chr3 18964875 18964898 -199072260 + (A)n Simple_repeat Simple_repeat 1 23 0 280 288 72 9 chr3 18964970 18965081 -199072077 + MIR SINE MIR 24 141 -67 2049 138 3 0 chr3 18965469 18965760 -199071398 + AluSx SINE Alu 2 293 -19 2080 121 0 23 chr3 18965767 18966073 -199071085 + AluSx SINE Alu 1 299 -13 2232 90 10 20 chr3 18966557 18966857 -199070301 + AluSq SINE Alu 1 297 -16 1549 161 57 11 chr3 18967976 18968255 -199068903 - AluSg SINE Alu -18 292 1 481 245 77 13 chr3 18968489 18968673 -199068485 + L1ME3A LINE L1 5959 6162 -2 683 91 0 83 chr3 18968685 18968739 -199068419 - L1MA3 LINE L1 0 6305 6265 2451 76 13 0 chr3 18968739 18969041 -199068117 - AluSq SINE Alu -7 306 1 683 91 0 83 chr3 18969041 18969107 -199068051 - L1MA3 LINE L1 -40 6265 6195 854 195 0 0 chr3 18969122 18969295 -199067863 + AluJb SINE Alu 134 306 0 1841 148 4 0 chr3 18969425 18969689 -199067469 + AluJo SINE Alu 1 265 -47 262 198 136 12 chr3 18970040 18970121 -199067037 - MIR3 SINE MIR -10 198 108 2016 113 3 40 chr3 18970191 18970330 -199066828 + AluSq SINE Alu 1 144 -169 2772 35 0 0 chr3 18970330 18970641 -199066517 + AluY SINE Alu 1 311 0 2016 113 3 40 chr3 18970641 18970802 -199066356 + AluSq SINE Alu 144 290 -23 2071 130 0 32 chr3 18971091 18971406 -199065752 - AluSg SINE Alu -5 305 1 1786 145 52 0 chr3 18971410 18971706 -199065452 - AluSx SINE Alu 0 310 1 1700 171 0 17 chr3 18971708 18971995 -199065163 - AluJo SINE Alu -9 303 22 306 239 25 0 chr3 18971995 18972075 -199065083 - L1M4c LINE L1 -4556 1826 1689 * 3700 130 74 2 chr3 18972070 18972679 -199064479 + L1MC1 LINE L1 5453 6105 -228 318 133 0 50 chr3 18972680 18972740 -199064418 + AluJo SINE Alu 87 143 -159 * 1677 116 4 4 chr3 18972732 18972974 -199064184 + MER50 LTR ERV1 493 734 0 523 92 2 0 chr3 18973069 18973144 -199064014 - MER4-int LTR ERV1 -989 5609 5545 980 100 27 20 chr3 18973196 18973346 -199063812 + MER50-int LTR ERV1 6969 7119 -86 22 0 0 0 chr3 18973352 18973374 -199063784 + AT_rich Low_complexity Low_complexity 1 22 0 2153 122 0 7 chr3 18973376 18973671 -199063487 + AluSx SINE Alu 3 295 -17 281 204 53 76 chr3 18973803 18973817 -199063341 + L1ME3 LINE L1 2202 2215 -4181 2126 114 7 26 chr3 18973817 18974123 -199063035 + AluSx SINE Alu 1 300 -12 281 204 53 76 chr3 18974123 18974201 -199062957 + L1ME3 LINE L1 2215 2293 -4103 2184 104 7 3 chr3 18974201 18974489 -199062669 + AluSg1 SINE Alu 1 289 -20 281 204 53 76 chr3 18974489 18974527 -199062631 + L1ME3 LINE L1 2293 2330 -4066 232 260 96 10 chr3 18975805 18975909 -199061249 - MIR SINE MIR -46 216 104 220 314 59 29 chr3 18976662 18976764 -199060394 - MIR SINE MIR -63 145 41 263 270 43 26 chr3 18976948 18977063 -199060095 - MIR3 SINE MIR -32 176 60 246 162 206 0 chr3 18977099 18977167 -199059991 + MER103 DNA DNA 12 93 -73 259 267 53 0 chr3 18978126 18978201 -199058957 + MIR SINE MIR 113 191 -71 * 414 228 92 71 chr3 18978196 18978380 -199058778 - MIR SINE MIR 0 262 75 833 140 0 0 chr3 18979588 18979702 -199057456 + FLAM_C SINE Alu 6 119 -24 21 0 0 0 chr3 18979854 18979875 -199057283 + AT_rich Low_complexity Low_complexity 1 21 0 1658 191 126 55 chr3 18979976 18980501 -199056657 - MER68 LTR ERV1 0 562 1 3475 121 31 0 chr3 18980654 18981135 -199056023 + MER1A DNA MER1_type 34 529 0 2460 82 3 0 chr3 18981561 18981866 -199055292 - AluSx SINE Alu -2 310 5 1619 159 62 38 chr3 18981900 18982190 -199054968 + AluJo SINE Alu 1 297 -15 2535 241 56 32 chr3 18982191 18983071 -199054087 + L1ME3 LINE L1 3571 4471 -1744 213 109 0 55 chr3 18983616 18983671 -199053487 + (TA)n Simple_repeat Simple_repeat 2 53 0 340 106 0 0 chr3 18983671 18983718 -199053440 - MER4E LTR ERV1 -69 697 651 645 248 122 17 chr3 18983737 18983975 -199053183 + L1MC4a LINE L1 5732 5994 -1814 2237 89 3 10 chr3 18984179 18984483 -199052675 + AluSx SINE Alu 1 302 -10 723 221 39 24 chr3 18984590 18984901 -199052257 + L1ME3 LINE L1 4544 6117 -122 784 129 187 0 chr3 18984994 18985133 -199052025 + FRAM SINE Alu 1 162 -14 348 144 31 62 chr3 18985133 18985230 -199051928 + L1ME3 LINE L1 6114 6207 -24 303 264 300 0 chr3 18985246 18985356 -199051802 - L2 LINE L2 -556 2758 2616 1130 53 0 13 chr3 18985374 18985524 -199051634 + AluSp/q SINE Alu 155 302 -11 287 282 86 8 chr3 18986864 18986981 -199050177 - MIR SINE MIR -33 229 104 252 324 57 29 chr3 18987734 18987839 -199049319 - MIR SINE MIR -63 145 38 308 270 43 26 chr3 18988020 18988135 -199049023 - MIR3 SINE MIR -32 176 60 247 162 206 0 chr3 18988171 18988239 -199048919 + MER103 DNA DNA 12 93 -73 293 267 53 0 chr3 18989198 18989273 -199047885 + MIR SINE MIR 113 191 -71 * 485 228 92 71 chr3 18989268 18989452 -199047706 - MIR SINE MIR 0 262 75 198 0 0 0 chr3 18989631 18989653 -199047505 + (A)n Simple_repeat Simple_repeat 1 22 0 201 314 43 14 chr3 18990331 18990401 -199046757 - MIR SINE MIR -90 118 47 817 152 0 30 chr3 18990663 18990795 -199046363 + FLAM_C SINE Alu 6 133 -10 21 0 0 0 chr3 18990929 18990950 -199046208 + AT_rich Low_complexity Low_complexity 1 21 0 1698 189 126 55 chr3 18991051 18991576 -199045582 - MER68 LTR ERV1 0 562 1 3422 118 31 6 chr3 18991729 18992213 -199044945 + MER1A DNA MER1_type 34 529 0 2407 62 0 3 chr3 18992639 18992948 -199044210 - AluY SINE Alu -3 308 1 1536 131 39 50 chr3 18992948 18993118 -199044040 - L1MB3 LINE L1 -352 5831 5664 2097 94 10 0 chr3 18993118 18993406 -199043752 - AluSq SINE Alu -22 291 1 1536 131 39 50 chr3 18993406 18993517 -199043641 - L1MB3 LINE L1 -519 5664 5553 3530 157 8 8 chr3 18993761 18994373 -199042785 - L1MB8 LINE L1 0 6178 5567 288 243 53 74 chr3 18994438 18994627 -199042531 - L1MC5 LINE L1 -542 7419 7235 254 29 88 0 chr3 18994644 18994678 -199042480 - L1M4 LINE L1 -1225 4921 4885 1872 156 0 13 chr3 18994685 18995000 -199042158 - AluJb SINE Alu -1 311 1 1431 183 66 3 chr3 18995023 18995312 -199041846 - AluJo SINE Alu -3 309 3 470 308 101 17 chr3 18995348 18995538 -199041620 - L1MEc LINE L1 -6098 298 83 207 0 0 0 chr3 18995538 18995561 -199041597 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 470 308 101 17 chr3 18995561 18995607 -199041551 - L1MEc LINE L1 -6313 83 42 1212 220 69 40 chr3 18995609 18995761 -199041397 - L1MEc LINE L1 -5218 1178 1032 2082 101 0 0 chr3 18995761 18996058 -199041100 - AluSq SINE Alu 0 302 6 1212 220 69 40 chr3 18996058 18996326 -199040832 - L1MEc LINE L1 -5364 1032 745 1066 163 69 0 chr3 18996434 18996636 -199040522 - AluJo SINE Alu -12 300 85 2243 92 3 13 chr3 18996636 18996951 -199040207 - AluSp SINE Alu -1 312 1 1079 116 29 6 chr3 18997169 18997341 -199039817 + MER47A DNA MER2_type 70 245 -121 803 117 17 0 chr3 18997344 18997464 -199039694 + AluSg/x SINE Alu 179 300 -12 303 156 0 0 chr3 18997467 18997512 -199039646 + MER47A DNA MER2_type 322 366 0 363 297 103 7 chr3 18997540 18997695 -199039463 - MIR SINE MIR -73 189 20 204 333 19 0 chr3 18997902 18997956 -199039202 + L2 LINE L2 3205 3259 -13 1938 103 30 30 chr3 18998319 18998620 -199038538 - AluSg SINE Alu -9 301 1 2217 92 0 20 chr3 18999766 19000069 -199037089 + AluSq SINE Alu 12 308 -5 1918 119 54 0 chr3 19000275 19000569 -199036589 - AluSg SINE Alu 0 310 1 448 286 118 70 chr3 19000809 19001166 -199035992 - L1ME3 LINE L1 -196 5966 5593 1978 107 14 3 chr3 19001754 19002045 -199035113 - AluSx SINE Alu -18 294 1 1661 155 0 38 chr3 19002403 19002719 -199034439 + AluJb SINE Alu 1 304 -8 22 0 0 0 chr3 19002752 19002774 -199034384 + AT_rich Low_complexity Low_complexity 1 22 0 2284 88 0 0 chr3 19002774 19003070 -199034088 + AluY SINE Alu 1 296 -15 783 195 0 0 chr3 19003073 19003201 -199033957 - AluJo/FLAM SINE Alu -174 128 1 234 243 214 19 chr3 19003381 19003484 -199033674 + L2 LINE L2 3150 3272 0 236 323 47 0 chr3 19004275 19004370 -199032788 + MIR SINE MIR 64 163 -60 349 253 13 0 chr3 19004548 19004627 -199032531 + MIR SINE MIR 166 245 -17 232 227 130 64 chr3 19004706 19004818 -199032340 - MIR SINE MIR -42 220 87 2355 174 29 13 chr3 19004867 19005322 -199031836 - L1MB7 LINE L1 -208 5976 5515 369 0 0 0 chr3 19005352 19005393 -199031765 + (TG)n Simple_repeat Simple_repeat 2 42 0 1420 113 18 5 chr3 19005394 19005615 -199031543 - L1PA8 LINE L1 -10 6162 5939 192 205 26 0 chr3 19006023 19006062 -199031096 - L2 LINE L2 -43 3270 3231 1837 112 46 30 chr3 19006096 19006401 -199030757 - AluJb SINE Alu -2 310 1 311 281 52 10 chr3 19006468 19006564 -199030594 - L1ME LINE L1 -5019 1063 964 1494 243 121 56 chr3 19006579 19006842 -199030316 - L1ME LINE L1 -5220 850 606 2297 81 0 3 chr3 19006842 19007139 -199030019 - AluSq SINE Alu -17 296 1 1494 243 121 56 chr3 19007139 19007472 -199029686 - L1ME LINE L1 -5464 606 186 1966 125 14 0 chr3 19007472 19007768 -199029390 - AluSx SINE Alu -1 311 12 1494 243 121 56 chr3 19007768 19007962 -199029196 - L1ME LINE L1 -5884 186 6 198 0 0 0 chr3 19008021 19008043 -199029115 + (T)n Simple_repeat Simple_repeat 1 22 0 302 253 0 81 chr3 19008252 19008339 -199028819 - L2 LINE L2 -7 3265 3186 1927 114 35 7 chr3 19008340 19008629 -199028529 - AluSx SINE Alu -15 297 1 617 138 147 17 chr3 19008981 19009097 -199028061 + FLAM_C SINE Alu 1 131 -2 2011 107 0 21 chr3 19009632 19009921 -199027237 - AluSx SINE Alu -29 283 1 273 136 0 0 chr3 19010359 19010403 -199026755 + Charlie4 DNA MER1_type 1864 1907 -54 296 247 103 41 chr3 19010799 19010896 -199026262 + MIR SINE MIR 82 184 -78 27 0 0 0 chr3 19012770 19012797 -199024361 + AT_rich Low_complexity Low_complexity 1 27 0 180 0 0 0 chr3 19012928 19012948 -199024210 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 21 57 0 0 chr3 19015565 19015600 -199021558 + AT_rich Low_complexity Low_complexity 1 35 0 1924 145 17 0 chr3 19015996 19016293 -199020865 - AluSx SINE Alu -10 302 1 1038 157 68 36 chr3 19017019 19017268 -199019890 - AluJo SINE Alu -55 257 1 1609 151 83 88 chr3 19017315 19017487 -199019671 + L1MB7 LINE L1 5736 5907 -277 1844 181 27 0 chr3 19017487 19017825 -199019333 - MER7A DNA MER2_type 0 346 2 1609 151 83 88 chr3 19017825 19017938 -199019220 + L1MB7 LINE L1 5907 6019 -165 2278 158 41 14 chr3 19017938 19018356 -199018802 + MSTB1 LTR MaLR 4 432 0 1609 151 83 88 chr3 19018356 19018501 -199018657 + L1MB7 LINE L1 6019 6165 -19 1325 164 12 12 chr3 19018696 19018940 -199018218 + AluJo SINE Alu 50 293 -19 2128 112 0 10 chr3 19018946 19019251 -199017907 - AluSg SINE Alu -8 302 1 25 0 0 0 chr3 19019260 19019285 -199017873 + AT_rich Low_complexity Low_complexity 1 25 0 1852 154 3 3 chr3 19019485 19019784 -199017374 - AluSx SINE Alu -13 299 1 189 107 0 0 chr3 19020135 19020163 -199016995 + (GGGGA)n Simple_repeat Simple_repeat 1 28 0 800 160 84 0 chr3 19021084 19021215 -199015943 - AluJb SINE Alu -14 298 157 426 226 128 49 chr3 19021602 19021766 -199015392 - MIR SINE MIR -52 210 34 2331 68 0 16 chr3 19021890 19022198 -199014960 - AluY SINE Alu -8 303 1 1960 112 39 3 chr3 19022254 19022539 -199014619 - AluSx SINE Alu -17 295 1 232 303 40 0 chr3 19022542 19022618 -199014540 - L3 LINE CR1 -162 1415 1337 897 112 0 0 chr3 19022945 19023070 -199014088 - FLAM_A SINE Alu 0 142 18 276 329 228 10 chr3 19023726 19024024 -199013134 - L3 LINE CR1 -631 946 584 254 250 279 10 chr3 19024124 19024228 -199012930 + L3 LINE CR1 1254 1385 -192 1546 156 11 25 chr3 19024250 19024526 -199012632 - AluJo SINE Alu -36 276 5 233 333 33 22 chr3 19024535 19024625 -199012533 + L3 LINE CR1 1378 1468 -109 523 290 208 8 chr3 19024660 19025034 -199012124 + L2 LINE L2 2753 3211 -102 1837 148 10 3 chr3 19025034 19025332 -199011826 - AluJb SINE Alu -12 300 1 2231 110 3 0 chr3 19025343 19025652 -199011506 - AluSx SINE Alu -2 310 1 2399 58 0 0 chr3 19026062 19026356 -199010802 - AluY SINE Alu -17 294 1 1823 135 7 14 chr3 19026791 19027079 -199010079 + AluJb SINE Alu 1 286 -26 1686 158 26 29 chr3 19027158 19027469 -199009689 - AluJb SINE Alu -2 310 1 1894 134 40 3 chr3 19027613 19027912 -199009246 + AluJo SINE Alu 1 310 -2 180 182 0 0 chr3 19028474 19028507 -199008651 + MIR3 SINE MIR 162 194 -14 1626 92 0 0 chr3 19029803 19030020 -199007138 - AluSx SINE Alu -95 217 1 305 262 94 34 chr3 19030302 19030451 -199006707 - MIR3 SINE MIR -1 207 50 30 59 0 0 chr3 19030802 19030853 -199006305 + AT_rich Low_complexity Low_complexity 1 51 0 1027 173 0 45 chr3 19031563 19031765 -199005393 - AluJo SINE Alu -69 243 51 906 225 12 0 chr3 19032223 19032396 -199004762 - FAM SINE Alu 0 175 1 297 0 0 0 chr3 19034409 19034442 -199002716 + (TG)n Simple_repeat Simple_repeat 2 34 0 1701 142 39 3 chr3 19034454 19034736 -199002422 - AluSx SINE Alu -20 292 1 2118 82 30 36 chr3 19035696 19035865 -199001293 - AluSx SINE Alu -9 303 135 1186 47 13 0 chr3 19035865 19036014 -199001144 - L1PA4 LINE L1 0 6155 6005 2118 82 30 36 chr3 19036014 19036149 -199001009 - AluSx SINE Alu -177 135 1 1997 145 0 0 chr3 19036525 19036829 -199000329 + AluJb SINE Alu 2 305 -7 2212 102 3 0 chr3 19036829 19037132 -199000026 + AluSc SINE Alu 1 304 -5 552 289 116 31 chr3 19038553 19038778 -198998380 - MIR SINE MIR 0 262 19 830 159 0 0 chr3 19038813 19038939 -198998219 - FLAM_C SINE Alu -7 126 1 1310 207 17 14 chr3 19040364 19040654 -198996504 - AluJo SINE Alu 0 312 22 1795 42 0 0 chr3 19040658 19040873 -198996285 + AluY SINE Alu 82 296 -15 353 277 0 0 chr3 19041342 19041425 -198995733 + L1ME LINE L1 5733 5815 -306 2373 80 0 0 chr3 19041525 19041827 -198995331 + AluSq SINE Alu 1 302 -11 22 0 0 0 chr3 19043370 19043392 -198993766 + AT_rich Low_complexity Low_complexity 1 22 0 336 271 139 0 chr3 19043413 19043564 -198993594 + L1MC5 LINE L1 7720 7891 -70 1398 206 25 0 chr3 19043608 19043884 -198993274 - AluJb SINE Alu -29 283 1 345 256 17 128 chr3 19044176 19044348 -198992810 - MER5B DNA MER1_type 0 178 26 258 105 0 0 chr3 19044396 19044434 -198992724 + (CAG)n Simple_repeat Simple_repeat 2 39 0 1994 97 3 10 chr3 19044928 19045217 -198991941 + AluSg SINE Alu 1 287 -23 313 329 43 21 chr3 19045283 19045423 -198991735 - MIR SINE MIR -117 145 3 1641 141 6 56 chr3 19046087 19046268 -198990890 - AluJb SINE Alu -8 304 144 1941 134 7 7 chr3 19046268 19046573 -198990585 - AluSx SINE Alu -7 305 1 1641 141 6 56 chr3 19046573 19046711 -198990447 - AluJb SINE Alu -168 144 1 1990 108 46 23 chr3 19046762 19047067 -198990091 + AluSx SINE Alu 1 312 0 226 309 81 49 chr3 19048070 19048123 -198989035 - MIR SINE MIR -66 142 92 2231 60 0 0 chr3 19048123 19048430 -198988728 + AluY SINE Alu 2 308 0 1985 133 0 3 chr3 19048440 19048742 -198988416 + AluSq SINE Alu 1 301 -12 226 309 81 49 chr3 19048742 19048799 -198988359 - MIR SINE MIR -124 84 16 2268 89 0 0 chr3 19048959 19049261 -198987897 + AluY SINE Alu 1 302 -9 1903 98 29 11 chr3 19049295 19049593 -198987565 - AluSc SINE Alu 0 303 1 1583 176 3 24 chr3 19049637 19049927 -198987231 - AluJo SINE Alu -20 292 9 231 0 266 0 chr3 19050054 19050118 -198987040 + (CAGTT)n Simple_repeat Simple_repeat 2 82 0 409 286 176 24 chr3 19050235 19050445 -198986713 - MIR SINE MIR 0 262 21 420 300 61 22 chr3 19050694 19050924 -198986234 + L1ME LINE L1 5551 5789 -332 546 283 128 13 chr3 19051571 19051797 -198985361 + L2 LINE L2 2885 3136 -177 846 129 0 23 chr3 19052040 19052172 -198984986 + FLAM_C SINE Alu 2 130 -3 23 0 0 0 chr3 19052217 19052240 -198984918 + AT_rich Low_complexity Low_complexity 1 23 0 482 179 0 0 chr3 19052244 19052322 -198984836 - FLAM SINE Alu -14 129 52 2320 59 10 13 chr3 19052674 19052978 -198984180 + AluY SINE Alu 1 303 -8 187 235 196 0 chr3 19055094 19055145 -198982013 + L2 LINE L2 3230 3290 -23 * 196 174 22 65 chr3 19055113 19055159 -198981999 + L2 LINE L2 3217 3260 -12 1806 169 0 7 chr3 19055195 19055490 -198981668 + AluJo SINE Alu 1 293 -19 1694 115 84 0 chr3 19055496 19055781 -198981377 + AluSg SINE Alu 1 307 0 241 308 95 53 chr3 19055838 19056007 -198981151 + L2 LINE L2 2679 2854 -460 714 284 42 21 chr3 19057095 19057334 -198979824 - MIR SINE MIR -2 260 17 330 329 21 14 chr3 19057356 19057496 -198979662 + MIR3 SINE MIR 14 154 -54 1757 147 3 7 chr3 19057545 19057831 -198979327 + AluJb SINE Alu 1 285 -27 827 195 0 12 chr3 19057864 19058033 -198979125 + L1MB7 LINE L1 6007 6173 -11 285 300 80 0 chr3 19058203 19058303 -198978855 + L2 LINE L2 3206 3313 0 302 277 98 27 chr3 19058342 19058454 -198978704 + L2 LINE L2 3151 3270 -2 248 196 0 20 chr3 19058534 19058585 -198978573 - LTR67 LTR ERVL 0 557 508 1891 114 0 0 chr3 19059439 19059702 -198977456 + AluSx SINE Alu 1 263 -49 407 228 177 32 chr3 19059756 19059914 -198977244 - MIR SINE MIR -62 200 20 190 279 132 0 chr3 19059929 19059997 -198977161 + MIR3 SINE MIR 78 154 -54 216 236 6 35 chr3 19060874 19060932 -198976226 + MIR SINE MIR 95 154 -61 2379 65 0 3 chr3 19061041 19061349 -198975809 - AluY SINE Alu -4 307 1 305 296 74 22 chr3 19061349 19061484 -198975674 + MIR3 SINE MIR 64 205 -3 225 320 120 51 chr3 19061865 19062298 -198974860 + L2 LINE L2 2652 3113 -159 920 128 0 7 chr3 19062304 19062445 -198974713 - AluJb SINE Alu -172 140 1 1361 119 5 5 chr3 19063228 19063438 -198973720 - AluJb SINE Alu -4 308 99 3383 167 21 41 chr3 19064166 19064242 -198972916 + L1MB7 LINE L1 5413 5489 -695 2133 109 3 3 chr3 19064242 19064545 -198972613 + AluSx SINE Alu 1 303 -9 3383 167 21 41 chr3 19064545 19065180 -198971978 + L1MB7 LINE L1 5489 6110 -74 2054 103 0 62 chr3 19065242 19065563 -198971595 - AluSx SINE Alu -11 301 1 400 82 66 0 chr3 19065566 19065627 -198971531 + L1MB7 LINE L1 6114 6178 -6 408 273 251 0 chr3 19066133 19066316 -198970842 - MIR SINE MIR 0 262 34 473 205 9 0 chr3 19066651 19066763 -198970395 + GA-rich Low_complexity Low_complexity 1 113 0 2056 86 65 0 chr3 19066997 19067289 -198969869 - AluSx SINE Alu -1 311 1 2277 90 0 6 chr3 19067400 19067712 -198969446 + AluSg SINE Alu 1 310 0 193 322 147 0 chr3 19067816 19067959 -198969199 - MIR SINE MIR 0 262 99 2058 124 0 0 chr3 19068254 19068552 -198968606 + AluSx SINE Alu 1 298 -14 214 300 127 32 chr3 19068729 19068949 -198968209 - L2 LINE L2 -69 3203 2963 261 301 79 4 chr3 19069018 19069170 -198967988 - MIR SINE MIR -55 153 35 255 228 22 76 chr3 19069566 19069658 -198967500 + MIR SINE MIR 65 151 -57 478 259 42 35 chr3 19069880 19070108 -198967050 - MIR3 SINE MIR -25 237 11 595 341 18 27 chr3 19070451 19070674 -198966484 - MIR SINE MIR -40 222 2 411 213 74 9 chr3 19070696 19070804 -198966354 + MER5B DNA MER1_type 1 115 -63 424 239 69 11 chr3 19071322 19071474 -198965684 - L1MC/D LINE L1 -916 5443 5313 1684 148 0 11 chr3 19071907 19072184 -198964974 - AluJb SINE Alu -34 278 5 395 314 131 21 chr3 19072863 19073146 -198964012 + L2 LINE L2 2848 3161 -111 455 220 107 94 chr3 19073232 19073391 -198963767 + MIR3 SINE MIR 4 164 -44 321 259 136 5 chr3 19073667 19073812 -198963346 + MIR SINE MIR 25 185 -77 253 265 132 29 chr3 19073887 19074023 -198963135 + MIR SINE MIR 91 240 -22 614 262 14 0 chr3 19074880 19075034 -198962124 + MIR SINE MIR 39 193 -60 1263 176 0 0 chr3 19076174 19076390 -198960768 + AluJo SINE Alu 85 300 -12 289 214 12 71 chr3 19076414 19076498 -198960660 - L1ME LINE L1 -356 5814 5736 1136 134 0 0 chr3 19076499 19076671 -198960487 - FRAM SINE Alu -7 169 1 2228 110 0 0 chr3 19076867 19077175 -198959983 - AluSx SINE Alu -1 311 4 485 308 31 13 chr3 19077178 19077337 -198959821 + MIR SINE MIR 61 222 -40 264 161 113 0 chr3 19077567 19077629 -198959529 + MIR SINE MIR 119 187 -75 195 309 106 16 chr3 19077927 19078115 -198959043 + L2 LINE L2 2725 2929 -385 2083 109 13 16 chr3 19078336 19078649 -198958509 - AluSx SINE Alu 0 312 1 416 277 208 0 chr3 19078731 19078890 -198958268 + MIR SINE MIR 58 249 -13 340 207 126 0 chr3 19078898 19078985 -198958173 - MER53 DNA DNA 0 189 92 3415 162 41 25 chr3 19079058 19079699 -198957459 - MER82 DNA MER2_type -1 652 2 189 0 0 0 chr3 19079713 19079734 -198957424 + (TG)n Simple_repeat Simple_repeat 2 22 0 530 196 62 84 chr3 19079771 19079941 -198957217 + L1MC5 LINE L1 7688 7853 -108 2150 102 3 3 chr3 19079941 19080236 -198956922 - AluSp SINE Alu -18 295 1 530 196 62 84 chr3 19080236 19080290 -198956868 + L1MC5 LINE L1 7853 7907 -54 201 162 0 0 chr3 19080366 19080403 -198956755 + T-rich Low_complexity Low_complexity 1 37 0 465 331 41 0 chr3 19080452 19080624 -198956534 + MIR3 SINE MIR 24 202 -6 2051 96 0 30 chr3 19080909 19081212 -198955946 + AluSx SINE Alu 1 294 -18 459 296 62 6 chr3 19081257 19081419 -198955739 - L2 LINE L2 -183 3089 2919 240 301 79 10 chr3 19081670 19081803 -198955355 - MIR SINE MIR -63 145 5 246 345 0 0 chr3 19082777 19082864 -198954294 - MIR SINE MIR -19 243 157 335 227 57 23 chr3 19083272 19083360 -198953798 + MIR SINE MIR 108 198 -64 277 210 32 0 chr3 19083401 19083463 -198953695 - MER5B DNA MER1_type -63 115 52 1047 161 62 13 chr3 19083684 19083962 -198953196 - MER2 DNA MER2_type 0 345 2 2618 183 67 17 chr3 19084352 19084931 -198952227 - L1MB7 LINE L1 0 6184 5577 234 244 128 13 chr3 19084933 19085011 -198952147 - MIR3 SINE MIR -54 154 68 220 227 164 27 chr3 19086645 19086755 -198950403 + MIR SINE MIR 19 143 -65 660 258 131 10 chr3 19086812 19087010 -198950148 - MIR SINE MIR -29 233 12 848 252 47 8 chr3 19088397 19088651 -198948507 - L1MB7 LINE L1 0 6184 5921 2188 133 0 3 chr3 19088805 19089107 -198948051 - AluSx SINE Alu -11 301 1 1717 174 75 3 chr3 19089561 19089882 -198947276 - MER2 DNA MER2_type 0 344 1 860 205 60 10 chr3 19090536 19090736 -198946422 + L1MC4a LINE L1 5408 5617 -2191 2363 202 42 8 chr3 19090746 19091246 -198945912 - L1MB5 LINE L1 -167 6007 5491 2416 84 0 0 chr3 19091262 19091558 -198945600 + AluSg SINE Alu 1 296 -14 24 0 0 0 chr3 19091580 19091604 -198945554 + AT_rich Low_complexity Low_complexity 1 24 0 1246 205 12 0 chr3 19091620 19091879 -198945279 - L1MB5 LINE L1 -970 5176 4915 765 240 47 34 chr3 19091878 19092111 -198945047 + L1MC4a LINE L1 5600 5835 -1973 * 23 24 0 24 chr3 19092186 19092212 -198944946 + AT_rich Low_complexity Low_complexity 1 27 -13 1908 125 0 53 chr3 19092212 19092516 -198944642 - AluSx SINE Alu -24 288 1 23 24 0 24 chr3 19092516 19092530 -198944628 + AT_rich Low_complexity Low_complexity 27 40 0 2386 105 0 0 chr3 19092659 19092964 -198944194 + AluSx SINE Alu 1 305 -7 1624 169 0 4 chr3 19093091 19093346 -198943812 - AluJb SINE Alu -58 254 1 236 245 0 0 chr3 19093421 19093474 -198943684 - MLT1H LTR MaLR -13 536 484 194 321 92 9 chr3 19093538 19093647 -198943511 - MIR3 SINE MIR -45 163 46 329 273 145 29 chr3 19094034 19094206 -198942952 + MER117 DNA MER1_type 6 197 0 1316 195 30 34 chr3 19095593 19095891 -198941267 - MLT1C LTR MaLR 0 467 171 241 73 0 109 chr3 19095909 19095964 -198941194 - L1MA4 LINE L1 -11 6289 6241 374 181 79 0 chr3 19095964 19096062 -198941096 - MLT1C LTR MaLR -221 169 52 874 139 16 0 chr3 19096746 19096875 -198940283 - FLAM_C SINE Alu -12 131 1 345 321 28 0 chr3 19097133 19097242 -198939916 - L2 LINE L2 -35 3237 3126 322 282 67 26 chr3 19097289 19097484 -198939674 - MIR SINE MIR -1 261 59 350 315 139 14 chr3 19097505 19097721 -198939437 - MIR SINE MIR -7 255 13 373 243 195 38 chr3 19098468 19098653 -198938505 - MIR SINE MIR 0 262 49 459 212 34 25 chr3 19099036 19099154 -198938004 - MIR SINE MIR -83 179 61 419 107 333 0 chr3 19099445 19099520 -198937638 - U6 snRNA snRNA -7 100 1 2003 116 40 7 chr3 19100079 19100381 -198936777 + AluSx SINE Alu 1 312 0 231 61 0 0 chr3 19100484 19100517 -198936641 + (T)n Simple_repeat Simple_repeat 1 33 0 437 228 55 55 chr3 19100564 19100607 -198936551 - L1ME4a LINE L1 -16 6105 6063 2255 121 3 0 chr3 19100607 19100914 -198936244 + AluSc SINE Alu 1 308 -1 437 228 55 55 chr3 19100914 19101015 -198936143 - L1ME4a LINE L1 -57 6064 5961 24 0 0 0 chr3 19101784 19101808 -198935350 + AT_rich Low_complexity Low_complexity 1 24 0 1374 157 4 30 chr3 19102115 19102350 -198934808 + AluJo SINE Alu 1 229 -83 1755 141 74 0 chr3 19102554 19102823 -198934335 + AluJo SINE Alu 1 289 -23 2284 104 17 0 chr3 19103322 19103620 -198933538 + AluSx SINE Alu 1 303 -9 902 205 6 0 chr3 19103635 19103801 -198933357 + AluJb SINE Alu 137 303 -9 389 206 0 41 chr3 19103902 19103999 -198933159 - L1MB8 LINE L1 -1 6177 6085 1629 173 0 0 chr3 19104128 19104377 -198932781 + AluJb SINE Alu 1 249 -63 2317 82 0 0 chr3 19104728 19105032 -198932126 + AluSg SINE Alu 1 304 0 498 248 24 16 chr3 19105033 19105158 -198932000 - MER3 DNA MER1_type -71 138 13 462 276 46 7 chr3 19105179 19105331 -198931827 + MIR SINE MIR 98 255 -7 273 314 0 0 chr3 19105411 19105481 -198931677 - L2 LINE L2 -15 3298 3229 230 267 128 0 chr3 19105551 19105637 -198931521 + L2 LINE L2 3217 3313 0 995 180 0 11 chr3 19106673 19106851 -198930307 - FRAM SINE Alu -8 168 1 2058 150 3 0 chr3 19107009 19107316 -198929842 - AluSx SINE Alu -4 308 1 827 136 0 0 chr3 19108910 19109028 -198928130 - 5S rRNA rRNA -1 120 3 259 263 127 25 chr3 19109233 19109351 -198927807 + L1P LINE L1 4883 5012 -1134 1952 161 0 0 chr3 19109386 19109678 -198927480 - AluJb SINE Alu -15 297 6 239 196 0 36 chr3 19110231 19110287 -198926871 + L2 LINE L2 3234 3287 -26 21 0 0 0 chr3 19110858 19110879 -198926279 + AT_rich Low_complexity Low_complexity 1 21 0 591 108 0 0 chr3 19111161 19111244 -198925914 + AluS SINE Alu 2 84 -228 253 286 214 0 chr3 19111342 19111468 -198925690 - MIR SINE MIR -109 153 1 343 320 300 2 chr3 19111811 19112301 -198924857 - L2 LINE L2 -23 3290 2637 593 120 54 0 chr3 19112529 19112621 -198924537 + U6 snRNA snRNA 8 104 -3 * 1253 181 127 39 chr3 19112619 19112957 -198924201 - Charlie1b DNA MER1_type -155 368 1 2374 67 7 10 chr3 19113959 19114259 -198922899 + AluY SINE Alu 1 299 -12 378 0 0 0 chr3 19114263 19114305 -198922853 + (TG)n Simple_repeat Simple_repeat 1 42 0 2244 81 0 36 chr3 19114882 19115191 -198921967 + AluY SINE Alu 1 298 -13 394 244 35 35 chr3 19115191 19115306 -198921852 - MIR SINE MIR -123 139 25 615 175 203 89 chr3 19116342 19116633 -198920525 - MER33 DNA MER1_type 0 324 1 558 121 0 0 chr3 19116660 19116743 -198920415 + AluY SINE Alu 217 299 -12 2351 89 3 3 chr3 19117280 19117582 -198919576 + AluY SINE Alu 1 302 -9 194 262 49 0 chr3 19117631 19117692 -198919466 + MIR SINE MIR 91 154 -108 528 297 10 62 chr3 19117716 19117819 -198919339 - MIR SINE MIR -15 247 159 2101 116 3 3 chr3 19117819 19118113 -198919045 - AluY SINE Alu -17 294 1 528 297 10 62 chr3 19118113 19118218 -198918940 - MIR SINE MIR -103 159 50 2494 110 0 21 chr3 19118303 19118324 -198918834 - L1PA14 LINE L1 -2 6159 6139 2327 93 14 0 chr3 19118324 19118614 -198918544 + AluSx SINE Alu 1 294 -18 2494 110 0 21 chr3 19118614 19118965 -198918193 - L1PA14 LINE L1 -22 6139 5795 582 262 48 27 chr3 19119011 19119198 -198917960 - L2 LINE L2 -6 3307 3117 468 157 95 48 chr3 19119209 19119250 -198917908 + MER44D DNA MER2_type 44 82 -2409 1957 150 7 0 chr3 19119250 19119544 -198917614 + AluSx SINE Alu 2 297 -15 2483 72 13 0 chr3 19119546 19119853 -198917305 + AluY SINE Alu 1 311 0 468 157 95 48 chr3 19119853 19119955 -198917203 + MER44D DNA MER2_type 82 467 -142 186 167 0 0 chr3 19120050 19120086 -198917072 + (TGGA)n Simple_repeat Simple_repeat 2 37 0 264 283 57 38 chr3 19120747 19120906 -198916252 - MIR SINE MIR -35 227 66 2293 115 0 19 chr3 19121340 19121654 -198915504 - AluSx SINE Alu -2 310 3 311 256 87 29 chr3 19121736 19121908 -198915250 - L1MC4 LINE L1 -169 7873 7692 824 128 15 15 chr3 19121908 19122041 -198915117 - AluJo SINE Alu -173 139 7 1312 198 116 75 chr3 19122097 19122537 -198914621 - MLT1C LTR MaLR -4 463 6 418 260 120 41 chr3 19122543 19122556 -198914602 - L1MC4 LINE L1 -413 7629 7618 2229 125 0 3 chr3 19122556 19122860 -198914298 - AluSx SINE Alu -9 303 1 418 260 120 41 chr3 19122860 19123088 -198914070 - L1MC4 LINE L1 -424 7618 7369 233 222 49 49 chr3 19123267 19123348 -198913810 - L1MD3 LINE L1 -855 7140 7060 1833 151 13 38 chr3 19123361 19123679 -198913479 - AluJb SINE Alu 0 312 3 909 153 0 0 chr3 19123680 19123811 -198913347 - Tigger3(Golem) DNA MER2_type -2852 177 47 2526 137 59 23 chr3 19123848 19123873 -198913285 + Tigger3(Golem) DNA MER2_type 2540 2563 -466 755 154 0 0 chr3 19123873 19123990 -198913168 + FLAM_C SINE Alu 1 117 -16 2526 137 59 23 chr3 19123990 19124437 -198912721 + Tigger3(Golem) DNA MER2_type 2563 3029 0 308 302 63 63 chr3 19124739 19124928 -198912230 - MIR3 SINE MIR -13 195 7 939 9 0 0 chr3 19125260 19125365 -198911793 - AluYa5/8 SINE Alu -2 308 204 312 263 54 46 chr3 19125431 19125623 -198911535 - MLT1J1 LTR MaLR -7 443 243 * 476 252 19 0 chr3 19125618 19125725 -198911433 - MLT1J1 LTR MaLR -337 109 1 1688 181 3 0 chr3 19126255 19126542 -198910616 + AluJb SINE Alu 1 288 -24 2407 86 0 7 chr3 19127001 19127303 -198909855 + AluSg1 SINE Alu 1 300 -9 347 274 43 8 chr3 19128130 19128247 -198908911 - MIR SINE MIR -107 155 35 802 166 114 36 chr3 19128578 19128711 -198908447 - MER6B DNA MER2_type -656 209 55 2190 112 67 14 chr3 19128711 19129067 -198908091 - THE1C LTR MaLR 0 375 1 802 166 114 36 chr3 19129067 19129126 -198908032 - MER6B DNA MER2_type -810 55 2 198 235 51 71 chr3 19130783 19130881 -198906277 + MIR3 SINE MIR 112 207 -1 1862 155 16 29 chr3 19131195 19131505 -198905653 + AluJb SINE Alu 1 306 -6 306 291 45 0 chr3 19132214 19132348 -198904810 + MIR SINE MIR 53 192 -70 2258 57 4 11 chr3 19132361 19132642 -198904516 + AluY SINE Alu 23 301 -10 1080 110 43 0 chr3 19132643 19132807 -198904351 + AluSg/x SINE Alu 133 303 -9 2187 81 0 0 chr3 19133366 19133624 -198903534 - AluSq SINE Alu -29 284 27 385 266 91 15 chr3 19133659 19133849 -198903309 + MIR SINE MIR 37 239 -23 180 0 0 0 chr3 19134072 19134092 -198903066 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2275 94 0 10 chr3 19134537 19134835 -198902323 + AluSq SINE Alu 1 295 -18 1613 158 52 7 chr3 19134972 19135244 -198901914 + AluJb SINE Alu 27 310 -2 437 296 148 0 chr3 19135471 19135633 -198901525 + MIR SINE MIR 2 187 -75 1233 192 103 12 chr3 19136043 19136372 -198900786 - MER93a LTR ERV1 0 402 1 266 224 122 31 chr3 19136389 19136487 -198900671 - MARNA DNA Mariner -236 350 244 2291 109 0 0 chr3 19136948 19137251 -198899907 - AluSx SINE Alu -9 303 1 2395 104 3 0 chr3 19137593 19137902 -198899256 - AluSp SINE Alu -3 310 1 2213 108 7 19 chr3 19138409 19138716 -198898442 + AluSx SINE Alu 1 303 -9 2032 136 17 0 chr3 19139034 19139335 -198897823 - AluSx SINE Alu -6 306 1 192 40 0 0 chr3 19140528 19140553 -198896605 + (A)n Simple_repeat Simple_repeat 1 25 0 289 279 72 9 chr3 19140625 19140736 -198896422 + MIR SINE MIR 24 141 -67 2021 141 3 0 chr3 19141124 19141415 -198895743 + AluSx SINE Alu 2 293 -19 2062 122 0 23 chr3 19141422 19141726 -198895432 + AluSx SINE Alu 1 297 -15 2242 90 10 20 chr3 19142210 19142511 -198894647 + AluSq SINE Alu 1 298 -15 1549 161 57 11 chr3 19143630 19143909 -198893249 - AluSg SINE Alu -18 292 1 481 245 77 13 chr3 19144143 19144327 -198892831 + L1ME3A LINE L1 5959 6162 -2 316 130 0 0 chr3 19144339 19144393 -198892765 - L1MA3 LINE L1 0 6305 6252 2344 100 0 19 chr3 19144393 19144704 -198892454 - AluSx SINE Alu -7 305 1 274 136 0 0 chr3 19145142 19145186 -198891972 + Charlie4 DNA MER1_type 1864 1907 -54 252 247 103 41 chr3 19145582 19145679 -198891479 + MIR SINE MIR 82 184 -78 27 0 0 0 chr3 19147553 19147580 -198889578 + AT_rich Low_complexity Low_complexity 1 27 0 180 0 0 0 chr3 19147711 19147731 -198889427 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 21 57 0 0 chr3 19150348 19150383 -198886775 + AT_rich Low_complexity Low_complexity 1 35 0 2047 145 17 0 chr3 19150779 19151076 -198886082 - AluSx SINE Alu -10 302 1 1152 149 123 29 chr3 19151783 19152059 -198885099 - AluJo SINE Alu 0 302 1 1619 146 83 88 chr3 19152106 19152278 -198884880 + L1MB7 LINE L1 5736 5907 -277 1893 175 27 0 chr3 19152278 19152616 -198884542 - MER7A DNA MER2_type 0 346 2 1619 146 83 88 chr3 19152616 19152729 -198884429 + L1MB7 LINE L1 5907 6019 -165 2267 158 41 14 chr3 19152729 19153147 -198884011 + MSTB1 LTR MaLR 4 432 0 1619 146 83 88 chr3 19153147 19153292 -198883866 + L1MB7 LINE L1 6019 6165 -19 1416 164 12 12 chr3 19153487 19153731 -198883427 + AluJo SINE Alu 50 293 -19 2255 112 0 10 chr3 19153737 19154042 -198883116 - AluSg SINE Alu -8 302 1 25 0 0 0 chr3 19154051 19154076 -198883082 + AT_rich Low_complexity Low_complexity 1 25 0 1967 154 3 3 chr3 19154276 19154575 -198882583 - AluSx SINE Alu -13 299 1 189 107 0 0 chr3 19154926 19154954 -198882204 + (GGGGA)n Simple_repeat Simple_repeat 1 28 0 27 0 0 0 chr3 19155625 19155652 -198881506 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr3 19155745 19155767 -198881391 + AT_rich Low_complexity Low_complexity 1 22 0 1725 145 74 0 chr3 19155965 19156234 -198880924 + AluJo SINE Alu 1 289 -23 2127 101 18 0 chr3 19156733 19157034 -198880124 + AluSx SINE Alu 1 306 0 347 241 11 11 chr3 19157035 19157122 -198880036 - Charlie5 DNA MER1_type -2521 91 5 458 276 46 7 chr3 19157181 19157333 -198879825 + MIR SINE MIR 98 255 -7 273 314 0 0 chr3 19157413 19157483 -198879675 - L2 LINE L2 -15 3298 3229 230 267 128 0 chr3 19157552 19157638 -198879520 + L2 LINE L2 3217 3313 0 995 180 0 11 chr3 19158674 19158852 -198878306 - FRAM SINE Alu -8 168 1 2080 146 3 0 chr3 19159010 19159318 -198877840 - AluSx SINE Alu -3 309 1 850 127 0 0 chr3 19160912 19161030 -198876128 - 5S rRNA rRNA -1 120 3 259 263 127 25 chr3 19161236 19161354 -198875804 + L1P LINE L1 4883 5012 -1134 828 192 46 9 chr3 19161389 19161608 -198875550 - AluJb SINE Alu -13 299 73 1764 130 4 29 chr3 19161722 19161828 -198875330 + AluSx SINE Alu 31 138 -174 2103 127 13 3 chr3 19161828 19162135 -198875023 + AluSx SINE Alu 1 310 -2 1764 130 4 29 chr3 19162135 19162305 -198874853 + AluSx SINE Alu 138 300 -12 907 130 0 8 chr3 19162399 19162530 -198874628 + FRAM SINE Alu 28 157 -19 680 115 34 115 chr3 19162802 19162950 -198874208 + AluJo SINE Alu 1 136 -176 2270 109 0 3 chr3 19163555 19163859 -198873299 - AluSc SINE Alu -6 303 1 2402 84 16 0 chr3 19164910 19165218 -198871940 - AluSq SINE Alu 0 313 1 868 158 11 92 chr3 19165769 19165953 -198871205 - AluJb SINE Alu -9 303 135 423 0 0 0 chr3 19165956 19166003 -198871155 + (TG)n Simple_repeat Simple_repeat 2 48 0 1186 103 0 27 chr3 19166150 19166334 -198870824 - AluY SINE Alu -17 294 116 1089 75 0 8 chr3 19166375 19166508 -198870650 - AluYb8 SINE Alu -186 132 1 2028 106 40 7 chr3 19166520 19166795 -198870363 - AluSq SINE Alu -23 290 7 2017 168 0 0 chr3 19166884 19167193 -198869965 + AluJb SINE Alu 1 309 -3 12366 48 6 5 chr3 19167294 19169606 -198867552 - L1PA5 LINE L1 0 6154 3844 1456 175 0 12 chr3 19169751 19170008 -198867150 + AluJb SINE Alu 43 296 -16 667 173 0 65 chr3 19170284 19170423 -198866735 + FLAM_C SINE Alu 1 130 -3 2163 78 32 11 chr3 19170494 19170776 -198866382 - AluSx SINE Alu -24 288 1 3638 160 17 8 chr3 19170798 19171436 -198865722 + L1MB4 LINE L1 5477 6120 -60 2051 147 0 0 chr3 19172113 19172406 -198864752 + AluSq SINE Alu 9 301 -12 2180 89 20 10 chr3 19172879 19173171 -198863987 + AluSp SINE Alu 1 295 -18 343 171 66 0 chr3 19173171 19173247 -198863911 - L1MB8 LINE L1 -57 6121 6041 228 35 0 0 chr3 19173248 19173277 -198863881 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 538 169 0 0 chr3 19174018 19174107 -198863051 - AluJ/FLAM SINE Alu -222 90 2 1740 175 3 7 chr3 19174384 19174681 -198862477 - AluJb SINE Alu -16 296 1 1026 112 35 231 chr3 19174683 19174850 -198862308 - Tigger2 DNA MER2_type -2175 543 345 2092 142 0 0 chr3 19174850 19175145 -198862013 - AluSx SINE Alu -17 295 1 1026 112 35 231 chr3 19175145 19175192 -198861966 - Tigger2 DNA MER2_type -2373 345 419 1855 108 59 35 chr3 19175192 19175479 -198861679 - AluSx SINE Alu -18 294 1 1026 112 35 231 chr3 19175479 19175610 -198861548 - Tigger2 DNA MER2_type -2298 420 265 2232 112 0 0 chr3 19175610 19175904 -198861254 - AluSg SINE Alu -16 294 1 1168 143 0 0 chr3 19175906 19176081 -198861077 - AluSg/x SINE Alu -7 305 131 398 19 0 19 chr3 19176081 19176133 -198861025 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2175 106 3 0 chr3 19176135 19176417 -198860741 - AluSq SINE Alu -30 283 1 2039 102 0 63 chr3 19176478 19176793 -198860365 - AluSx SINE Alu -17 295 1 182 289 0 0 chr3 19177370 19177422 -198859736 + MIR SINE MIR 204 255 -7 1463 159 24 75 chr3 19177811 19177971 -198859187 - AluJb SINE Alu -19 293 153 2369 93 0 3 chr3 19177971 19178281 -198858877 - AluSg SINE Alu -1 309 1 1463 159 24 75 chr3 19178281 19178415 -198858743 - AluJb SINE Alu -159 153 14 288 0 0 0 chr3 19178524 19178556 -198858602 + (TG)n Simple_repeat Simple_repeat 1 32 0 1616 175 4 7 chr3 19178561 19178830 -198858328 - AluJo SINE Alu -44 268 1 2366 97 3 0 chr3 19179003 19179313 -198857845 - AluSp SINE Alu -2 311 1 973 176 19 0 chr3 19179388 19179547 -198857611 - AluSg/x SINE Alu -18 292 131 1662 179 29 4 chr3 19180516 19180827 -198856331 - AluJb SINE Alu 0 318 1 2564 57 0 0 chr3 19180831 19181131 -198856027 - AluY SINE Alu -11 300 1 1505 152 5 0 chr3 19181243 19181460 -198855698 - AluSx SINE Alu -92 220 3 560 167 70 0 chr3 19181787 19181901 -198855257 + FAM SINE Alu 29 150 -35 1941 97 93 14 chr3 19182063 19182341 -198854817 + AluSq SINE Alu 1 300 -13 25 0 0 0 chr3 19182352 19182377 -198854781 + AT_rich Low_complexity Low_complexity 1 25 0 1516 195 0 14 chr3 19182384 19182681 -198854477 + AluJo SINE Alu 1 293 -19 2314 113 7 0 chr3 19182822 19183131 -198854027 + AluSx SINE Alu 2 312 0 2015 103 39 14 chr3 19183917 19184198 -198852960 + AluSq SINE Alu 1 288 -25 555 174 0 0 chr3 19184259 19184345 -198852813 + AluJ/FLAM SINE Alu 2 87 -225 1228 153 20 15 chr3 19184345 19184541 -198852617 + AluJo SINE Alu 21 217 -95 1465 199 30 0 chr3 19184857 19185123 -198852035 - AluSx SINE Alu -38 274 1 22 35 0 0 chr3 19185253 19185282 -198851876 + AT_rich Low_complexity Low_complexity 1 29 0 349 214 179 21 chr3 19185536 19185676 -198851482 - MIR SINE MIR -20 242 81 1768 165 13 16 chr3 19185859 19186162 -198850996 - AluJo SINE Alu -10 302 1 619 248 239 18 chr3 19186389 19186870 -198850288 - L2 LINE L2 0 3313 2717 1460 124 5 10 chr3 19186890 19187099 -198850059 - AluSg/x SINE Alu -18 292 85 816 179 35 7 chr3 19187119 19187264 -198849894 + AluJb SINE Alu 3 151 -161 219 186 34 34 chr3 19187288 19187347 -198849811 - L2 LINE L2 -1017 2297 2239 193 244 61 130 chr3 19187340 19187396 -198849762 + MIR SINE MIR 133 180 -82 * 1352 57 0 6 chr3 19187396 19187700 -198849458 + AluY SINE Alu 1 303 0 193 244 61 130 chr3 19187700 19187757 -198849401 + MIR SINE MIR 180 239 -23 387 363 41 7 chr3 19187758 19187904 -198849254 + MER91A DNA MER1_type 14 164 -32 27 49 0 0 chr3 19188084 19188125 -198849033 + AT_rich Low_complexity Low_complexity 1 41 0 2104 101 14 0 chr3 19188125 19188421 -198848737 + AluSq SINE Alu 1 300 -13 521 190 30 0 chr3 19188813 19188913 -198848245 + U13 snRNA snRNA 1 103 -1 401 233 22 11 chr3 19188945 19189035 -198848123 + HAL1 LINE L1 446 536 -1971 543 271 18 18 chr3 19189120 19189290 -198847868 + HAL1 LINE L1 744 913 -1594 1478 154 20 43 chr3 19189299 19189598 -198847560 + AluJb SINE Alu 21 312 0 949 247 211 36 chr3 19189600 19189733 -198847425 + HAL1 LINE L1 1296 1404 -1103 2203 85 13 7 chr3 19189733 19190040 -198847118 + AluSq SINE Alu 1 309 -4 949 247 211 36 chr3 19190040 19190225 -198846933 + HAL1 LINE L1 1404 1555 -952 2042 108 7 13 chr3 19190225 19190530 -198846628 - AluSx SINE Alu -9 303 1 949 247 211 36 chr3 19190530 19190680 -198846478 + HAL1 LINE L1 1555 1847 -660 240 233 27 27 chr3 19190763 19190836 -198846322 + GA-rich Low_complexity Low_complexity 4 76 0 347 280 25 3 chr3 19190970 19191120 -198846038 - MER113 DNA MER1_type? 0 521 316 1927 138 24 0 chr3 19191130 19191428 -198845730 + AluSx SINE Alu 8 312 0 2040 124 3 0 chr3 19191434 19191740 -198845418 + AluSq SINE Alu 1 307 -6 2373 62 0 0 chr3 19191771 19192063 -198845095 + AluY SINE Alu 1 292 -19 2187 110 0 0 chr3 19192083 19192384 -198844774 + AluSx SINE Alu 1 301 -11 255 196 89 0 chr3 19192385 19192441 -198844717 + AluSp SINE Alu 136 196 -107 524 158 32 21 chr3 19192441 19192536 -198844622 + FLAM_C SINE Alu 35 130 -13 1979 149 0 3 chr3 19192603 19192911 -198844247 + AluJb SINE Alu 1 307 -5 271 373 0 0 chr3 19193068 19193170 -198843988 + MIR SINE MIR 141 242 -20 896 132 14 0 chr3 19193452 19193596 -198843562 - AluSx SINE Alu -118 194 49 1753 126 8 0 chr3 19193690 19193951 -198843207 + AluSx SINE Alu 42 304 -8 576 282 69 46 chr3 19193964 19194329 -198842829 + L2 LINE L2 2734 3311 -2 798 97 132 0 chr3 19194836 19194950 -198842208 + AluSq/x SINE Alu 5 133 -179 901 47 0 0 chr3 19195016 19195123 -198842035 - L1P LINE L1 -2280 3866 3760 930 196 41 5 chr3 19195290 19195510 -198841648 - MER50 LTR ERV1 -14 720 493 289 172 0 17 chr3 19195502 19195560 -198841598 - AluJo SINE Alu -159 143 87 * 2045 138 105 5 chr3 19195561 19195932 -198841226 - L1MC1 LINE L1 -228 6105 5698 932 167 139 0 chr3 19195937 19196152 -198841006 - L1MB8 LINE L1 -140 6038 5794 1003 194 38 0 chr3 19196157 19196368 -198840790 - Tigger7 DNA MER2_type -1 2490 2272 2194 106 3 0 chr3 19196369 19196680 -198840478 + AluSp SINE Alu 1 312 -1 2077 96 0 0 chr3 19197214 19197494 -198839664 + AluSx SINE Alu 21 300 -12 1604 158 0 55 chr3 19198352 19198662 -198838496 - AluJb SINE Alu -19 293 1 1728 122 4 0 chr3 19198743 19198990 -198838168 + AluSg SINE Alu 1 248 -62 1889 135 13 10 chr3 19199470 19199781 -198837377 + AluSx SINE Alu 1 312 0 818 140 0 44 chr3 19199952 19200088 -198837070 + FLAM_C SINE Alu 2 131 -2 1633 151 3 43 chr3 19200093 19200417 -198836741 + AluJo SINE Alu 2 312 0 23 0 0 0 chr3 19200435 19200458 -198836700 + AT_rich Low_complexity Low_complexity 1 23 0 262 278 176 56 chr3 19200637 19200853 -198836305 + L2 LINE L2 2837 3078 -194 191 280 133 0 chr3 19202580 19202655 -198834503 + MIR SINE MIR 55 139 -123 374 335 42 11 chr3 19202784 19202975 -198834183 + L1ME LINE L1 5599 5795 -326 2289 74 0 0 chr3 19203057 19203356 -198833802 + AluSx SINE Alu 14 312 0 1283 87 0 6 chr3 19203361 19203533 -198833625 + AluSp SINE Alu 131 301 -12 2122 92 3 23 chr3 19203538 19203676 -198833482 + AluSx SINE Alu 1 140 -172 2419 60 0 0 chr3 19203676 19203975 -198833183 + AluY SINE Alu 1 299 -12 2122 92 3 23 chr3 19203975 19204142 -198833016 + AluSx SINE Alu 140 300 -12 191 299 234 0 chr3 19204253 19204360 -198832798 - L2 LINE L2 -22 3291 3160 1249 200 43 37 chr3 19204369 19204669 -198832489 + AluJo SINE Alu 1 302 0 957 98 0 0 chr3 19204736 19204869 -198832289 + AluY SINE Alu 1 133 -178 2465 52 0 10 chr3 19204886 19205194 -198831964 + AluY SINE Alu 1 305 -6 1994 101 25 0 chr3 19205251 19205556 -198831602 + AluSp SINE Alu 1 312 0 270 184 197 0 chr3 19205557 19205633 -198831525 + MIR SINE MIR 136 226 -36 * 785 279 40 8 chr3 19205626 19205873 -198831285 + MIR SINE MIR 8 262 0 2670 10 0 0 chr3 19206076 19206375 -198830783 + AluY SINE Alu 11 309 -2 2412 156 66 0 chr3 19206434 19206890 -198830268 - L1MB5 LINE L1 0 6174 5689 2216 112 0 0 chr3 19207068 19207372 -198829786 + AluSx SINE Alu 1 304 -8 2390 68 0 10 chr3 19207383 19207691 -198829467 + AluY SINE Alu 1 305 -6 238 265 0 44 chr3 19207849 19207917 -198829241 - MIR SINE MIR -149 113 49 1430 177 0 4 chr3 19207966 19208215 -198828943 + AluJo SINE Alu 11 258 -54 2193 87 7 0 chr3 19208234 19208532 -198828626 + AluSp SINE Alu 1 300 -13 1048 265 146 10 chr3 19208543 19208954 -198828204 - L2 LINE L2 -19 3294 2828 334 281 69 50 chr3 19209158 19209196 -198827962 - L2 LINE L2 -239 3033 2997 2941 150 87 48 chr3 19209196 19209633 -198827525 - LTR26E LTR ERV1 0 622 154 1684 159 10 17 chr3 19209633 19209934 -198827224 + AluJb SINE Alu 1 299 -13 2941 150 87 48 chr3 19209934 19210095 -198827063 - LTR26E LTR ERV1 -468 154 1 334 281 69 50 chr3 19210095 19210216 -198826942 - L2 LINE L2 -275 2997 2871 1722 129 3 28 chr3 19210484 19210770 -198826388 + AluSx SINE Alu 1 279 -33 345 315 0 22 chr3 19211035 19211124 -198826034 - L1MC4 LINE L1 -1342 6700 6614 1570 178 3 21 chr3 19211206 19211492 -198825666 - AluJo SINE Alu -31 281 1 861 295 38 26 chr3 19211584 19211930 -198825228 - L1ME LINE L1 -374 5747 5398 2036 95 50 0 chr3 19211933 19212216 -198824942 - AluSx SINE Alu -15 297 1 1093 91 0 62 chr3 19212408 19212584 -198824574 + AluSg SINE Alu 14 178 -132 4628 127 19 19 chr3 19213053 19213825 -198823333 - LTR5 LTR ERVK 0 969 198 486 151 0 0 chr3 19213985 19214058 -198823100 - AluS SINE Alu -235 77 5 1449 140 0 0 chr3 19214173 19214395 -198822763 + AluSg/x SINE Alu 83 304 -6 1069 165 90 5 chr3 19214395 19214607 -198822551 + AluSx SINE Alu 1 230 -82 1811 119 4 0 chr3 19214646 19214906 -198822252 - AluSx SINE Alu -11 301 41 295 233 0 14 chr3 19214910 19214983 -198822175 + MLT1C LTR MaLR 66 137 -330 1432 181 0 24 chr3 19215010 19215297 -198821861 - AluJb SINE Alu -32 280 1 807 252 94 0 chr3 19215319 19215573 -198821585 + MLT1C LTR MaLR 190 467 0 1137 415 0 29 chr3 19215738 19216049 -198821109 + AluJb SINE Alu 1 302 0 732 215 7 7 chr3 19216050 19216185 -198820973 - MER5A DNA MER1_type -52 137 3 2325 80 0 0 chr3 19216335 19216635 -198820523 - AluY SINE Alu -11 300 1 261 315 14 0 chr3 19216704 19216777 -198820381 - L1ME LINE L1 -476 5645 5572 1608 147 4 12 chr3 19216802 19217061 -198820097 - AluSq SINE Alu -56 257 1 243 143 0 24 chr3 19217061 19217103 -198820055 + MSTA LTR MaLR 388 428 0 317 138 17 0 chr3 19217103 19217161 -198819997 - HSMAR2 DNA Mariner -1242 60 2 1047 192 22 14 chr3 19217161 19217396 -198819762 - L1M4 LINE L1 -451 5713 5470 1254 221 61 0 chr3 19217794 19218088 -198819070 - AluJb SINE Alu 0 312 1 1334 224 14 0 chr3 19218191 19218472 -198818686 + AluJo SINE Alu 3 287 -25 1615 125 4 47 chr3 19218554 19218647 -198818511 + AluSx SINE Alu 34 129 -183 1749 126 63 0 chr3 19218647 19218916 -198818242 + AluSx SINE Alu 1 286 -26 1615 125 4 47 chr3 19218916 19218933 -198818225 + AluSx SINE Alu 129 145 -167 2265 52 42 0 chr3 19218933 19219220 -198817938 + AluY SINE Alu 1 299 -12 1615 125 4 47 chr3 19219220 19219387 -198817771 + AluSx SINE Alu 145 300 -12 200 383 0 0 chr3 19219498 19219558 -198817600 - L2 LINE L2 -22 3291 3232 547 233 100 104 chr3 19219717 19219996 -198817162 + MER45C DNA AcHobo 102 379 -574 1272 221 144 89 chr3 19220026 19220381 -198816777 + MER45C DNA AcHobo 448 782 -799 1985 127 6 19 chr3 19220381 19220697 -198816461 - AluSx SINE Alu 0 312 1 1272 221 144 89 chr3 19220697 19220719 -198816439 + MER45C DNA AcHobo 782 801 -780 2248 98 0 3 chr3 19220719 19221024 -198816134 - AluSx SINE Alu -8 304 1 1272 221 144 89 chr3 19221024 19221083 -198816075 + MER45C DNA AcHobo 801 909 -44 886 142 0 7 chr3 19221083 19221224 -198815934 - FLAM_C SINE Alu -3 140 1 2269 93 0 7 chr3 19221236 19221538 -198815620 - AluSg SINE Alu -10 300 1 392 132 0 0 chr3 19221539 19221592 -198815566 + MER45C DNA AcHobo 901 953 0 360 327 9 0 chr3 19221823 19221933 -198815225 - MLT1H1 LTR MaLR -250 305 195 683 100 18 9 chr3 19222097 19222207 -198814951 + AluSp/q SINE Alu 199 309 -4 990 229 134 42 chr3 19222207 19222392 -198814766 + HAL1 LINE L1 1481 1648 -859 2042 108 7 13 chr3 19222392 19222697 -198814461 - AluSx SINE Alu -9 303 1 990 229 134 42 chr3 19222697 19222847 -198814311 + HAL1 LINE L1 1648 1847 -660 240 233 27 27 chr3 19222930 19223003 -198814155 + GA-rich Low_complexity Low_complexity 4 76 0 347 280 25 3 chr3 19223137 19223287 -198813871 - MER113 DNA MER1_type? 0 521 316 1927 138 24 0 chr3 19223297 19223595 -198813563 + AluSx SINE Alu 8 312 0 1994 134 3 0 chr3 19223601 19223900 -198813258 + AluSx SINE Alu 1 300 -12 1745 139 0 55 chr3 19224758 19225068 -198812090 - AluJb SINE Alu -19 293 1 1287 93 6 6 chr3 19225073 19225255 -198811903 - AluSp SINE Alu -12 301 120 24 0 0 0 chr3 19225255 19225279 -198811879 + AT_rich Low_complexity Low_complexity 1 24 0 2096 110 7 3 chr3 19225981 19226290 -198810868 + AluSx SINE Alu 1 310 -2 963 141 6 24 chr3 19226290 19226460 -198810698 + AluSg/x SINE Alu 134 300 -12 852 130 0 8 chr3 19226554 19226685 -198810473 + FRAM SINE Alu 28 157 -19 685 115 34 115 chr3 19226957 19227105 -198810053 + AluJo SINE Alu 1 136 -176 2143 109 0 3 chr3 19227710 19228014 -198809144 - AluSc SINE Alu -6 303 1 2285 90 0 0 chr3 19229064 19229375 -198807783 - AluY SINE Alu 0 311 1 975 119 0 0 chr3 19229377 19229511 -198807647 - AluSq/x SINE Alu -179 134 1 308 200 15 15 chr3 19229511 19229576 -198807582 + MLT1H1 LTR MaLR 489 553 -2 538 273 14 0 chr3 19229578 19229717 -198807441 - LTR33 LTR ERVL -379 142 2 749 313 197 8 chr3 19229722 19230204 -198806954 - L2 LINE L2 -808 2506 1934 790 103 86 0 chr3 19230205 19230321 -198806837 + AluJb SINE Alu 2 127 -185 213 39 0 0 chr3 19230324 19230350 -198806808 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 969 258 27 27 chr3 19230464 19230759 -198806399 + L1ME LINE L1 5319 5613 -557 874 273 73 11 chr3 19230772 19231047 -198806111 - LTR16A LTR ERVL -12 438 147 2007 79 4 0 chr3 19231421 19231686 -198805472 + AluSg SINE Alu 28 293 -17 371 267 96 7 chr3 19231770 19231905 -198805253 + MIR SINE MIR 116 262 0 2128 97 10 0 chr3 19231992 19232282 -198804876 + AluSp SINE Alu 1 293 -20 2426 50 0 10 chr3 19232347 19232645 -198804513 + AluY SINE Alu 4 298 -13 1848 143 3 3 chr3 19233003 19233297 -198803861 + AluSx SINE Alu 1 294 -18 2156 90 0 0 chr3 19233303 19233606 -198803552 + AluY SINE Alu 2 304 0 2028 87 3 51 chr3 19233611 19233923 -198803235 + AluSx SINE Alu 1 297 -15 29 28 0 0 chr3 19234017 19234053 -198803105 + AT_rich Low_complexity Low_complexity 1 36 0 294 239 35 35 chr3 19234421 19234534 -198802624 - MLT1K LTR MaLR -29 559 447 1019 113 0 0 chr3 19234591 19234750 -198802408 - AluY SINE Alu -10 301 143 310 195 146 168 chr3 19235222 19235319 -198801839 - MER5A DNA MER1_type -1 188 90 1982 137 0 0 chr3 19235319 19235612 -198801546 - AluSx SINE Alu -19 293 1 310 195 146 168 chr3 19235612 19235623 -198801535 - MER5A DNA MER1_type -99 90 80 186 43 0 0 chr3 19235623 19235646 -198801512 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 2147 68 0 0 chr3 19235650 19235929 -198801229 - AluY SINE Alu -32 279 1 310 195 146 168 chr3 19235929 19235999 -198801159 - MER5A DNA MER1_type -112 77 8 250 284 114 0 chr3 19236032 19236120 -198801038 + MIR SINE MIR 73 170 -92 895 128 0 0 chr3 19236162 19236295 -198800863 + AluJb SINE Alu 1 133 -179 2195 79 0 0 chr3 19236296 19236586 -198800572 + AluY SINE Alu 1 290 -21 1908 89 58 21 chr3 19236610 19236901 -198800257 + AluY SINE Alu 1 302 -9 2058 126 0 0 chr3 19236907 19237208 -198799950 + AluSx SINE Alu 1 301 -11 181 211 0 0 chr3 19237231 19237269 -198799889 + L2 LINE L2 3223 3260 -12 545 205 9 27 chr3 19237654 19237766 -198799392 + MIR SINE MIR 20 129 -133 * 640 292 99 10 chr3 19237757 19237959 -198799199 - MIR SINE MIR -41 221 2 934 142 34 0 chr3 19238042 19238190 -198798968 - FRAM SINE Alu -1 175 23 189 195 0 0 chr3 19238219 19238260 -198798898 + T-rich Low_complexity Low_complexity 1 41 0 561 65 0 0 chr3 19238284 19238363 -198798795 - L1PA8 LINE L1 -21 6140 6034 708 229 7 0 chr3 19238370 19238510 -198798648 - FLAM_C SINE Alu -1 142 2 448 133 0 0 chr3 19238510 19238591 -198798567 + AluJ/FRAM SINE Alu 223 303 0 668 329 24 12 chr3 19238594 19238843 -198798315 + MIR SINE MIR 1 252 -10 2312 119 0 3 chr3 19239042 19239353 -198797805 + AluSx SINE Alu 1 310 -2 210 320 82 65 chr3 19239802 19240096 -198797062 - L2 LINE L2 -54 3218 2920 1190 184 124 145 chr3 19240116 19240654 -198796504 + MLT1F LTR MaLR 16 542 0 402 269 167 30 chr3 19240838 19241072 -198796086 + MLT1K LTR MaLR 73 338 -250 2286 98 10 3 chr3 19241082 19241387 -198795771 - AluSx SINE Alu -5 307 1 1059 76 0 0 chr3 19241421 19241553 -198795605 + AluY SINE Alu 1 132 -179 1234 104 0 22 chr3 19241594 19241777 -198795381 + AluY SINE Alu 116 294 -17 886 186 68 77 chr3 19241892 19241924 -198795234 + AluJb SINE Alu 86 117 -195 441 0 0 0 chr3 19241924 19241973 -198795185 + (CA)n Simple_repeat Simple_repeat 2 50 0 886 186 68 77 chr3 19241973 19242160 -198794998 + AluJb SINE Alu 117 303 -9 1396 89 28 0 chr3 19242711 19242891 -198794267 + AluSq SINE Alu 1 185 -128 473 232 174 25 chr3 19243110 19243348 -198793810 + MLT1H1 LTR MaLR 275 522 -33 268 286 0 11 chr3 19243360 19243451 -198793707 + MLT1H1-int LTR MaLR 1 90 -1645 2037 154 12 0 chr3 19243496 19243829 -198793329 - LTR26B LTR ERV1 -1 530 191 2470 70 0 3 chr3 19243829 19244128 -198793030 - AluSx SINE Alu -14 298 1 1312 96 0 0 chr3 19244138 19244304 -198792854 - AluSp SINE Alu -8 305 140 700 63 0 4 chr3 19244309 19244454 -198792704 - LTR26B LTR ERV1 -327 204 4 262 301 89 56 chr3 19244455 19244619 -198792539 + MLT1H1-int LTR MaLR 309 487 -884 2433 86 3 0 chr3 19244619 19244922 -198792236 - AluSp SINE Alu -9 304 1 262 301 89 56 chr3 19244922 19245026 -198792132 + MLT1H1-int LTR MaLR 487 586 -785 807 214 0 36 chr3 19245127 19245295 -198791863 + FRAM SINE Alu 2 163 -13 2207 122 0 3 chr3 19245642 19245936 -198791222 - AluSg SINE Alu -15 295 3 285 254 75 40 chr3 19246299 19246472 -198790686 + MLT1H1-int LTR MaLR 1556 1734 -1 435 228 91 158 chr3 19246473 19246989 -198790169 + MLT1H1 LTR MaLR 1 550 -5 180 0 0 0 chr3 19246989 19247009 -198790149 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1897 156 11 0 chr3 19247016 19247161 -198789997 - AluSx SINE Alu -27 285 143 2410 92 0 0 chr3 19247161 19247467 -198789691 - AluY SINE Alu -5 306 1 1897 156 11 0 chr3 19247467 19247603 -198789555 - AluSx SINE Alu -169 143 1 435 228 91 158 chr3 19247603 19247668 -198789490 + MLT1H1 LTR MaLR 485 553 -2 508 266 14 0 chr3 19247670 19247809 -198789349 - LTR33 LTR ERVL -379 142 2 426 246 122 2 chr3 19248036 19248209 -198788949 + MIR SINE MIR 2 204 -58 1942 151 3 3 chr3 19248228 19248519 -198788639 - AluJb SINE Alu -21 291 1 610 194 24 77 chr3 19248648 19248699 -198788459 - MIR SINE MIR -10 252 200 2538 34 45 0 chr3 19248699 19248990 -198788168 - AluY SINE Alu -7 304 1 610 194 24 77 chr3 19248990 19249108 -198788050 - MIR SINE MIR -62 200 92 605 193 42 0 chr3 19249179 19249298 -198787860 - FLAM_A SINE Alu -9 124 1 387 269 55 80 chr3 19249301 19249544 -198787614 - L1MC/D LINE L1 -743 5403 5249 2015 122 27 0 chr3 19249544 19249839 -198787319 - AluSq SINE Alu -10 303 1 387 269 55 80 chr3 19249839 19249988 -198787170 - L1MC/D LINE L1 -897 5249 5098 2032 96 60 7 chr3 19250060 19250341 -198786817 - AluSg SINE Alu -14 296 1 2576 65 0 0 chr3 19250346 19250655 -198786503 - AluY SINE Alu -2 309 1 961 128 0 0 chr3 19250656 19250789 -198786369 - AluJb SINE Alu -179 133 1 251 284 114 0 chr3 19250831 19250919 -198786239 - MIR SINE MIR -92 170 73 333 199 149 149 chr3 19250952 19251022 -198786136 + MER5A DNA MER1_type 8 77 -112 2270 74 0 0 chr3 19251022 19251329 -198785829 + AluY SINE Alu 1 307 0 333 199 149 149 chr3 19251329 19251340 -198785818 + MER5A DNA MER1_type 77 87 -102 2123 137 0 0 chr3 19251340 19251633 -198785525 + AluSx SINE Alu 1 293 -19 333 199 149 149 chr3 19251633 19251730 -198785428 + MER5A DNA MER1_type 86 188 -1 621 207 9 0 chr3 19252096 19252207 -198784951 + MER81 DNA DNA 3 114 0 540 242 27 34 chr3 19252258 19252407 -198784751 + MER5B DNA MER1_type 1 148 -30 297 0 0 0 chr3 19252408 19252441 -198784717 + (TG)n Simple_repeat Simple_repeat 2 34 0 2207 100 0 0 chr3 19252442 19252721 -198784437 - AluSx SINE Alu -33 279 1 28 0 0 0 chr3 19252728 19252756 -198784402 + AT_rich Low_complexity Low_complexity 1 28 0 338 232 14 0 chr3 19252775 19252844 -198784314 + L2 LINE L2 3232 3301 -12 339 266 19 19 chr3 19252844 19252998 -198784160 + L1ME4a LINE L1 5968 6121 0 191 333 0 26 chr3 19253660 19253738 -198783420 + MIR3 SINE MIR 112 187 -21 522 330 176 9 chr3 19254103 19254558 -198782600 - L2 LINE L2 -850 2464 1934 822 103 86 0 chr3 19254558 19254675 -198782483 + AluJb SINE Alu 1 127 -185 213 39 0 0 chr3 19254678 19254704 -198782454 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 941 263 22 22 chr3 19254818 19255092 -198782066 + L1ME LINE L1 5319 5585 -577 788 276 73 11 chr3 19255126 19255401 -198781757 - LTR16A LTR ERVL -12 438 147 1683 181 36 26 chr3 19255573 19255983 -198781175 - AluJo SINE Alu 0 413 1 761 320 71 43 chr3 19256088 19256650 -198780508 - ERVL LTR ERVL -439 5325 4748 194 0 39 0 chr3 19256846 19256872 -198780286 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 1746 154 28 21 chr3 19256874 19257160 -198779998 - AluSx SINE Alu -24 288 1 447 301 53 73 chr3 19258062 19258404 -198778754 - ERVL LTR ERVL -1140 4624 4290 24 0 0 0 chr3 19258404 19258428 -198778730 + AT_rich Low_complexity Low_complexity 1 24 0 1140 341 61 31 chr3 19258452 19259639 -198777519 - ERVL LTR ERVL -1339 4146 3007 1377 201 29 4 chr3 19259644 19259922 -198777236 + AluSq SINE Alu 1 285 -28 669 87 0 78 chr3 19259983 19260086 -198777072 - AluSg SINE Alu -214 96 2 2276 77 0 46 chr3 19260098 19260421 -198776737 - AluY SINE Alu -3 308 1 1299 102 0 0 chr3 19260431 19260597 -198776561 - AluSp SINE Alu -8 305 140 700 63 0 4 chr3 19260602 19260747 -198776411 - LTR26B LTR ERV1 -327 204 4 251 298 78 59 chr3 19260748 19260912 -198776246 + MLT1-int LTR MaLR 309 481 -890 2324 102 3 3 chr3 19260912 19261216 -198775942 - AluSp SINE Alu -9 304 1 251 298 78 59 chr3 19261216 19261306 -198775852 + MLT1-int LTR MaLR 481 568 -803 3116 62 14 39 chr3 19262632 19263071 -198774087 + SVA Other Other 5 432 -954 1272 78 0 0 chr3 19263071 19263224 -198773934 - AluSg SINE Alu -157 153 1 180 111 0 0 chr3 19263686 19263713 -198773445 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 752 172 39 0 chr3 19263743 19263871 -198773287 + FRAM SINE Alu 23 155 -21 632 292 99 10 chr3 19263975 19264177 -198772981 + MIR SINE MIR 2 221 -41 526 214 9 27 chr3 19264168 19264280 -198772878 - MIR SINE MIR -133 129 20 * 181 211 0 0 chr3 19264665 19264703 -198772455 - L2 LINE L2 -12 3260 3223 2205 126 0 3 chr3 19264726 19265028 -198772130 - AluSx SINE Alu -11 301 1 433 96 14 0 chr3 19265028 19265101 -198772057 + L1MB7 LINE L1 6111 6184 0 457 265 45 8 chr3 19265833 19265965 -198771193 - MIR3 SINE MIR -12 196 60 252 143 0 0 chr3 19266064 19266106 -198771052 - MIR SINE MIR -174 88 47 1021 155 14 0 chr3 19266912 19267060 -198770098 - FRAM SINE Alu -18 158 9 260 378 41 0 chr3 19267066 19267164 -198769994 + L2 LINE L2 3136 3237 -35 533 250 100 6 chr3 19267172 19267332 -198769826 - MIR SINE MIR -1 261 87 2211 104 0 19 chr3 19267332 19267648 -198769510 + AluSg SINE Alu 1 310 0 2119 136 6 22 chr3 19267991 19268339 -198768819 - AluJb SINE Alu 0 343 1 1101 76 0 0 chr3 19268364 19268495 -198768663 - AluSg SINE Alu -179 131 1 29 0 0 0 chr3 19268502 19268531 -198768627 + AT_rich Low_complexity Low_complexity 1 29 0 2145 120 0 14 chr3 19268537 19268829 -198768329 - AluSx SINE Alu -24 288 1 463 178 9 9 chr3 19269472 19269579 -198767579 + CT-rich Low_complexity Low_complexity 4 110 0 272 275 90 39 chr3 19269935 19270074 -198767084 - L1MC5 LINE L1 -105 7856 7699 2142 133 3 0 chr3 19270074 19270367 -198766791 - AluSx SINE Alu -18 294 1 272 275 90 39 chr3 19270367 19270460 -198766698 - L1MC5 LINE L1 -262 7699 7612 271 189 44 22 chr3 19270708 19270798 -198766360 + MER113 DNA MER1_type? 8 99 -422 2450 57 13 3 chr3 19270800 19271100 -198766058 - AluY SINE Alu -8 303 1 813 191 28 51 chr3 19271104 19271282 -198765876 - MER5A DNA MER1_type -9 180 7 393 284 89 35 chr3 19271315 19271484 -198765674 - L3 LINE CR1 -99 1478 1301 978 161 63 74 chr3 19271643 19271711 -198765447 - MER33 DNA MER1_type -2307 278 211 1715 168 13 30 chr3 19271711 19272014 -198765144 + AluJo SINE Alu 1 298 -14 978 161 63 74 chr3 19272014 19272241 -198764917 - MER33 DNA MER1_type -2374 211 1 1493 224 11 35 chr3 19272461 19272726 -198764432 - L1M4 LINE L1 -743 5403 5133 2293 97 0 0 chr3 19272726 19273044 -198764114 + AluSc SINE Alu 1 309 0 1493 224 11 35 chr3 19273044 19273187 -198763971 - L1M4 LINE L1 -1013 5133 5004 1803 162 53 3 chr3 19273187 19273471 -198763687 - AluSx SINE Alu -14 298 1 1493 224 11 35 chr3 19273471 19273512 -198763646 - L1M4 LINE L1 -1142 5004 4964 2263 93 3 40 chr3 19273560 19273884 -198763274 - AluSx SINE Alu 0 312 1 2289 90 0 0 chr3 19273889 19274192 -198762966 - AluY SINE Alu 0 304 2 2020 139 3 3 chr3 19274198 19274492 -198762666 - AluSx SINE Alu -18 294 1 2490 60 0 10 chr3 19274850 19275148 -198762010 - AluY SINE Alu -13 298 4 2270 97 10 0 chr3 19275213 19275503 -198761655 - AluSp SINE Alu -20 293 1 1426 40 12 0 chr3 19275744 19275917 -198761241 + AluY SINE Alu 128 302 -9 263 239 35 35 chr3 19275974 19276087 -198761071 + MLT1K LTR MaLR 447 559 -29 29 28 0 0 chr3 19276455 19276491 -198760667 + AT_rich Low_complexity Low_complexity 1 36 0 2430 64 3 3 chr3 19276585 19276880 -198760278 - AluY SINE Alu -16 295 1 514 293 108 14 chr3 19276880 19277172 -198759986 + L2 LINE L2 2924 3243 -70 996 168 15 30 chr3 19277195 19277398 -198759760 - MER3 DNA MER1_type 0 209 10 2362 68 20 7 chr3 19277464 19277757 -198759401 - AluY SINE Alu -14 297 1 1827 163 0 14 chr3 19277759 19278054 -198759104 - AluJb SINE Alu -21 291 1 931 207 5 11 chr3 19278134 19278322 -198758836 - MER20 DNA MER1_type 0 219 33 934 239 31 28 chr3 19278508 19278797 -198758361 + AluSx SINE Alu 2 291 -11 261 197 0 0 chr3 19278802 19278878 -198758280 + (TGAA)n Simple_repeat Simple_repeat 4 79 0 2289 106 0 0 chr3 19279013 19279305 -198757853 + AluSx SINE Alu 21 312 0 22 0 0 0 chr3 19279624 19279646 -198757512 + GC_rich Low_complexity Low_complexity 1 22 0 234 326 21 11 chr3 19279972 19280067 -198757091 - Charlie8 DNA MER1_type -2301 116 21 265 234 0 0 chr3 19281058 19281122 -198756036 + L1ME4a LINE L1 5683 5746 -2062 244 281 74 25 chr3 19281394 19281515 -198755643 + L1ME4a LINE L1 5979 6105 -16 2199 112 3 16 chr3 19281591 19281903 -198755255 + AluSx SINE Alu 1 308 -4 1671 153 66 20 chr3 19281908 19282396 -198754762 + L1MB3 LINE L1 5577 6143 -40 2216 120 0 13 chr3 19282396 19282705 -198754453 + AluSx SINE Alu 1 305 -7 502 204 0 0 chr3 19282719 19282812 -198754346 + FLAM_A SINE Alu 16 108 -34 2136 112 16 7 chr3 19282812 19283115 -198754043 - AluSq SINE Alu -7 306 1 671 82 48 0 chr3 19283180 19283327 -198753831 + GA-rich Low_complexity Low_complexity 1 154 0 2497 70 0 0 chr3 19286126 19286425 -198750733 + AluY SINE Alu 1 299 -12 184 154 39 0 chr3 19286735 19286787 -198750371 + CT-rich Low_complexity Low_complexity 2 55 0 791 216 39 39 chr3 19287155 19287363 -198749795 + MIR SINE MIR 51 258 -4 2332 96 0 7 chr3 19287507 19287809 -198749349 - AluSx SINE Alu -4 308 9 182 297 55 41 chr3 19287901 19288046 -198749112 + L2 LINE L2 2824 2970 -302 852 224 175 32 chr3 19288076 19288103 -198749055 - L2 LINE L2 0 3313 3291 1963 147 17 0 chr3 19288103 19288395 -198748763 + AluJo SINE Alu 1 297 -15 852 224 175 32 chr3 19288395 19288805 -198748353 - L2 LINE L2 -22 3291 2795 911 149 34 0 chr3 19288927 19289075 -198748083 - FRAM SINE Alu -1 175 23 198 191 0 0 chr3 19289104 19289146 -198748012 + T-rich Low_complexity Low_complexity 1 42 0 546 80 0 0 chr3 19289166 19289245 -198747913 - L1PA8 LINE L1 -21 6140 6034 715 227 7 0 chr3 19289252 19289393 -198747765 - FLAM_C SINE Alu 0 143 2 448 133 0 0 chr3 19289393 19289474 -198747684 + AluJ/FRAM SINE Alu 223 303 0 684 325 24 12 chr3 19289477 19289726 -198747432 + MIR SINE MIR 1 252 -10 2044 121 10 13 chr3 19289925 19290223 -198746935 + AluSx SINE Alu 1 297 -15 579 234 62 45 chr3 19291018 19291204 -198745954 + MIR SINE MIR 4 195 -62 270 0 0 0 chr3 19291204 19291234 -198745924 + (TATG)n Simple_repeat Simple_repeat 2 31 0 2138 112 3 7 chr3 19291240 19291535 -198745623 - AluY SINE Alu -17 294 1 2057 147 55 24 chr3 19291535 19291956 -198745202 + L1MC3 LINE L1 5397 5830 -1955 2742 133 171 20 chr3 19292000 19292549 -198744609 - MER67B LTR ERV1 -22 639 8 231 36 0 0 chr3 19292550 19292578 -198744580 + (TCCCC)n Simple_repeat Simple_repeat 3 30 0 2148 114 10 0 chr3 19292597 19292886 -198744272 - AluSq SINE Alu -21 292 1 2275 82 0 3 chr3 19292923 19293215 -198743943 - AluY SINE Alu -20 291 1 2122 190 11 25 chr3 19293216 19293659 -198743499 + L1MC3 LINE L1 5845 6281 -1504 834 224 140 89 chr3 19293661 19294156 -198743002 - MER66A LTR ERV1 -10 601 104 2929 180 47 0 chr3 19294156 19294712 -198742446 + L1MC3 LINE L1 6276 6857 -928 270 0 0 0 chr3 19294712 19294742 -198742416 + (CA)n Simple_repeat Simple_repeat 2 31 0 820 191 0 7 chr3 19294851 19294987 -198742171 - AluJo SINE Alu -177 135 1 581 254 213 1 chr3 19295107 19295420 -198741738 + MLT1G1 LTR MaLR 1 336 -254 385 83 0 273 chr3 19295618 19295672 -198741486 - MER45 DNA AcHobo 0 1581 1514 2432 89 0 7 chr3 19295672 19295974 -198741184 + AluSg SINE Alu 1 300 -10 385 83 0 273 chr3 19295974 19295986 -198741172 - MER45 DNA AcHobo -67 1514 1501 917 125 0 22 chr3 19295986 19296122 -198741036 + FLAM_C SINE Alu 1 133 0 385 83 0 273 chr3 19296122 19296186 -198740972 - MER45 DNA AcHobo -80 1501 1486 2446 88 0 7 chr3 19296186 19296493 -198740665 + AluSx SINE Alu 1 305 -7 343 207 16 107 chr3 19296493 19296614 -198740544 - MIR SINE MIR -108 154 45 1758 134 90 7 chr3 19296614 19296891 -198740267 + AluJb SINE Alu 1 300 -12 267 254 0 0 chr3 19297077 19297132 -198740026 - Tigger5 DNA MER2_type 0 2323 2269 274 172 250 0 chr3 19297167 19297231 -198739927 - Tigger5 DNA MER2_type -2243 80 1 581 296 39 17 chr3 19297365 19297595 -198739563 - MIR SINE MIR -7 255 21 387 241 200 14 chr3 19298023 19298168 -198738990 + MIR SINE MIR 19 190 -72 262 288 0 12 chr3 19298214 19298294 -198738864 + MIR SINE MIR 184 262 0 230 277 15 15 chr3 19298285 19298350 -198738808 - MIR SINE MIR -63 145 81 * 2320 109 3 0 chr3 19298386 19298690 -198738468 - AluSx SINE Alu -5 307 3 1511 184 139 17 chr3 19298700 19299053 -198738105 + MSTD LTR MaLR 1 396 0 746 0 0 0 chr3 19299075 19299160 -198737998 - L1PA6 LINE L1 -6 6148 6064 943 120 0 8 chr3 19299170 19299295 -198737863 - FLAM_C SINE Alu -9 124 1 1293 184 60 183 chr3 19299297 19299406 -198737752 + L1MC4 LINE L1 6118 6239 -1569 1845 115 30 54 chr3 19299406 19299567 -198737591 - AluSx SINE Alu -19 293 141 2621 43 0 7 chr3 19299567 19299872 -198737286 - AluY SINE Alu -8 303 1 1845 115 30 54 chr3 19299872 19300006 -198737152 - AluSx SINE Alu -171 141 5 1293 184 60 183 chr3 19300006 19300712 -198736446 + L1MC4 LINE L1 6239 6777 -1031 396 247 47 13 chr3 19300981 19301131 -198736027 - MLT1H LTR MaLR -316 233 79 2544 172 40 4 chr3 19301454 19301955 -198735203 - L1MB4 LINE L1 -6 6174 5656 2023 161 7 0 chr3 19301955 19302265 -198734893 - AluJo SINE Alu 0 312 1 528 175 0 35 chr3 19302333 19302447 -198734711 + AluJb SINE Alu 203 312 0 893 147 0 0 chr3 19302461 19302590 -198734568 + FLAM_A SINE Alu 8 136 -6 236 324 14 0 chr3 19302637 19302711 -198734447 + MIR SINE MIR 110 184 -78 202 220 77 5 chr3 19303990 19304099 -198733059 - MIR SINE MIR -14 248 86 1530 145 139 3 chr3 19305680 19305983 -198731175 - MER4E LTR ERV1 -8 758 415 288 69 0 69 chr3 19305996 19306054 -198731104 - MER4B LTR ERV1 -556 54 1 445 265 121 28 chr3 19306368 19306583 -198730575 + MLT1K LTR MaLR 340 574 -14 649 254 117 76 chr3 19306649 19307043 -198730115 - MLT1J LTR MaLR -3 508 99 299 306 48 127 chr3 19307081 19307515 -198729643 - L2 LINE L2 -925 2389 1990 2209 99 0 62 chr3 19307521 19307843 -198729315 + AluSx SINE Alu 2 303 -9 241 224 30 60 chr3 19308009 19308076 -198729082 - MIR SINE MIR -98 164 100 463 291 0 4 chr3 19308268 19308404 -198728754 + MIR SINE MIR 19 151 -65 2300 107 10 3 chr3 19308498 19308806 -198728352 + AluSx SINE Alu 1 310 -2 244 270 203 27 chr3 19308952 19309100 -198728058 - MIR SINE MIR -7 255 82 231 209 0 0 chr3 19309480 19309523 -198727635 - MIR SINE MIR -2 260 218 2315 80 10 3 chr3 19309529 19309831 -198727327 - AluY SINE Alu -7 304 1 2049 143 0 10 chr3 19309958 19310266 -198726892 - AluJb SINE Alu -7 305 1 1974 145 3 3 chr3 19310426 19310716 -198726442 + AluJb SINE Alu 1 290 -22 390 286 75 41 chr3 19310724 19310808 -198726350 + HAL1b LINE L1 1191 1284 -64 1979 147 0 27 chr3 19310808 19311107 -198726051 + AluSq SINE Alu 2 292 -21 390 286 75 41 chr3 19311107 19311169 -198725989 + HAL1b LINE L1 1284 1342 -6 208 331 57 40 chr3 19311912 19312036 -198725122 - MIR SINE MIR -70 192 67 559 241 61 50 chr3 19312449 19312678 -198724480 + L1ME4a LINE L1 5856 6090 -31 2167 141 3 0 chr3 19312678 19312990 -198724168 - AluSq SINE Alu 0 313 1 559 241 61 50 chr3 19312990 19313022 -198724136 + L1ME4a LINE L1 6090 6120 -1 191 262 0 0 chr3 19313094 19313136 -198724022 + MIR SINE MIR 212 253 -9 626 283 16 21 chr3 19313224 19313415 -198723743 + MIR SINE MIR 71 260 -2 2330 87 3 0 chr3 19313925 19314223 -198722935 - AluY SINE Alu -12 299 1 1009 112 0 8 chr3 19314226 19314360 -198722798 - AluJb SINE Alu -179 133 1 294 95 0 0 chr3 19314361 19314403 -198722755 + (TTTC)n Simple_repeat Simple_repeat 2 43 0 231 292 0 0 chr3 19315405 19315470 -198721688 - MER58 DNA MER1_type 0 2420 2356 192 40 0 0 chr3 19315486 19315511 -198721647 + (TGG)n Simple_repeat Simple_repeat 3 27 0 1841 184 18 21 chr3 19315513 19315898 -198721260 + MER65C LTR ERV1 78 461 0 261 261 0 46 chr3 19315930 19315995 -198721163 - MER58 DNA MER1_type -166 58 1 242 229 0 0 chr3 19316398 19316446 -198720712 + L1M4 LINE L1 4284 4331 -1815 2385 77 0 7 chr3 19316452 19316750 -198720408 - AluY SINE Alu -15 296 1 250 315 14 0 chr3 19316819 19316892 -198720266 - L1ME LINE L1 -476 5645 5572 1826 129 96 7 chr3 19316904 19317175 -198719983 - AluSq SINE Alu -18 295 1 238 289 145 0 chr3 19317242 19317318 -198719840 - L2 LINE L2 0 3272 3186 221 167 0 0 chr3 19317316 19317352 -198719806 - MIR SINE MIR -83 179 144 * 61 37 0 0 chr3 19317354 19317436 -198719722 + AT_rich Low_complexity Low_complexity 1 82 0 292 195 12 69 chr3 19317437 19317475 -198719683 - MIR SINE MIR -64 144 120 2053 143 0 7 chr3 19317475 19317775 -198719383 + AluSx SINE Alu 1 298 -14 292 195 12 69 chr3 19317775 19317816 -198719342 - MIR SINE MIR -88 120 78 2279 116 7 7 chr3 19318066 19318376 -198718782 - AluJo SINE Alu -1 311 2 200 268 29 0 chr3 19318623 19318698 -198718460 + MIR SINE MIR 106 143 -65 1349 279 45 20 chr3 19318698 19318825 -198718333 + HERV16 LTR ERVL 2323 2445 -2551 2186 128 48 31 chr3 19318825 19319183 -198717975 + THE1B LTR MaLR 1 364 0 1349 279 45 20 chr3 19319183 19319495 -198717663 + HERV16 LTR ERVL 2445 2773 -2223 2497 81 0 7 chr3 19319534 19319844 -198717314 + AluY SINE Alu 1 308 -3 1681 135 45 28 chr3 19319848 19320136 -198717022 + L1PA16 LINE L1 5869 6161 -5 2189 78 12 72 chr3 19320311 19320630 -198716528 + AluSq SINE Alu 2 301 -12 1061 270 146 10 chr3 19320641 19321052 -198716106 - L2 LINE L2 -19 3294 2828 1439 159 40 0 chr3 19321294 19321545 -198715613 - LTR26B LTR ERV1 0 531 271 2728 102 151 118 chr3 19321782 19322680 -198714478 + pTR5 LTR ERV1 1206 2438 0 199 262 49 16 chr3 19323477 19323538 -198713620 + MIR SINE MIR 61 123 -85 389 266 8 40 chr3 19323781 19323905 -198713253 + MIR SINE MIR 24 143 -65 283 299 11 0 chr3 19323969 19324056 -198713102 + L1ME4a LINE L1 5186 5273 -873 2565 57 0 0 chr3 19324063 19324359 -198712799 - AluY SINE Alu -15 296 1 405 263 18 0 chr3 19324359 19324473 -198712685 + L1ME4a LINE L1 5685 5800 -559 6768 63 21 9 chr3 19324752 19325597 -198711561 + SVA Other Other 532 1386 0 279 0 0 0 chr3 19325606 19325637 -198711521 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2327 107 3 0 chr3 19326021 19326321 -198710837 - AluSp SINE Alu -12 301 1 246 267 0 0 chr3 19326500 19326575 -198710583 + L1ME4a LINE L1 6046 6120 -1 596 280 93 6 chr3 19326825 19327062 -198710096 - MIR SINE MIR 0 262 4 2320 140 22 0 chr3 19327125 19327481 -198709677 - THE1B LTR MaLR 0 364 1 9087 98 42 44 chr3 19327481 19328969 -198708189 - THE1B-int LTR MaLR 0 1580 97 459 61 15 0 chr3 19328969 19329035 -198708123 - THE1B-int LTR MaLR -1427 153 87 1711 161 99 28 chr3 19329035 19329605 -198707553 + MER51B LTR ERV1 1 376 -1 544 96 24 0 chr3 19329605 19329688 -198707470 - THE1B-int LTR MaLR -1495 85 1 2203 144 28 3 chr3 19329688 19330043 -198707115 - THE1B LTR MaLR 0 364 1 1245 218 8 11 chr3 19330559 19330820 -198706338 - AluJo SINE Alu -52 260 1 2178 121 0 3 chr3 19331210 19331507 -198705651 - AluSq SINE Alu -17 296 1 881 222 248 4 chr3 19331507 19331773 -198705385 - L1ME LINE L1 -542 5624 5294 242 178 0 0 chr3 19331776 19331821 -198705337 - Alu SINE Alu -8 293 249 1005 153 0 25 chr3 19331821 19331984 -198705174 + AluJo/FRAM SINE Alu 146 304 -8 357 113 38 38 chr3 19331998 19332078 -198705080 + HsTC2 DNA Tc2 3 82 -1816 902 145 0 0 chr3 19332084 19332208 -198704950 + FLAM_C SINE Alu 6 129 -14 2545 67 0 0 chr3 19332216 19332516 -198704642 + AluY SINE Alu 1 300 -11 1593 117 113 0 chr3 19332530 19332804 -198704354 + Tigger3(Golem) DNA MER2_type 2722 3026 -3 506 227 36 0 chr3 19332941 19333051 -198704107 + MIR SINE MIR 60 173 -89 2439 67 0 0 chr3 19333154 19333459 -198703699 - AluY SINE Alu 0 305 1 876 203 68 0 chr3 19333592 19333769 -198703389 - MER5A DNA MER1_type 0 189 1 585 227 147 90 chr3 19334050 19334167 -198702991 + MER102a DNA MER1_type 1 110 -1307 2321 116 0 0 chr3 19334167 19334470 -198702688 + AluSx SINE Alu 1 303 -9 585 227 147 90 chr3 19334470 19334482 -198702676 + MER102a DNA MER1_type 110 120 -1297 2145 128 20 0 chr3 19334482 19334788 -198702370 + AluSx SINE Alu 1 312 0 585 227 147 90 chr3 19334788 19334957 -198702201 + MER102a DNA MER1_type 120 317 -13 679 147 0 0 chr3 19335536 19335631 -198701527 - AluJ/FLAM SINE Alu -216 96 2 23 33 0 0 chr3 19335634 19335664 -198701494 + AT_rich Low_complexity Low_complexity 1 30 0 249 325 157 0 chr3 19335871 19336023 -198701135 + MIR3 SINE MIR 8 181 -63 359 283 92 17 chr3 19337145 19337318 -198699840 - Charlie8 DNA MER1_type -2129 288 103 1098 83 0 0 chr3 19337325 19337458 -198699700 + AluSc SINE Alu 1 133 -176 2040 138 3 7 chr3 19337458 19337754 -198699404 + AluSq SINE Alu 1 295 -18 944 290 118 7 chr3 19337929 19338343 -198698815 - LTR16B LTR ERVL -4 460 1 233 266 16 126 chr3 19338370 19338618 -198698540 + L2 LINE L2 2690 2899 -373 2425 60 10 10 chr3 19338618 19338920 -198698238 - AluSq SINE Alu -11 302 1 233 266 16 126 chr3 19338920 19338996 -198698162 + L2 LINE L2 2899 2982 -290 1154 163 72 0 chr3 19339244 19339453 -198697705 - L1M3 LINE L1 -397 5786 5563 22 35 0 0 chr3 19339849 19339878 -198697280 + AT_rich Low_complexity Low_complexity 1 29 0 1879 128 40 47 chr3 19339883 19340179 -198696979 + AluSx SINE Alu 3 296 -16 2193 105 0 3 chr3 19340181 19340477 -198696681 + AluY SINE Alu 1 295 -16 2506 145 71 67 chr3 19340477 19340798 -198696360 - L1MB3 LINE L1 -11 6172 5847 1978 176 0 0 chr3 19340798 19341110 -198696048 - AluJb SINE Alu 0 312 1 2506 145 71 67 chr3 19341110 19341396 -198695762 - L1MB3 LINE L1 -336 5847 5563 23 0 0 0 chr3 19341402 19341425 -198695733 + AT_rich Low_complexity Low_complexity 1 23 0 586 208 156 87 chr3 19341516 19341604 -198695554 + LTR50 LTR ERVL 471 551 -244 2370 57 0 11 chr3 19341604 19341933 -198695225 - AluY SINE Alu 0 327 2 198 0 0 0 chr3 19341933 19341955 -198695203 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 2265 96 3 0 chr3 19341956 19342238 -198694920 - AluSx SINE Alu -29 283 1 2413 91 0 0 chr3 19342244 19342540 -198694618 - AluY SINE Alu -15 296 1 586 208 156 87 chr3 19342540 19342729 -198694429 + LTR50 LTR ERVL 555 779 -16 1033 188 0 0 chr3 19342831 19343001 -198694157 - AluJb SINE Alu -3 309 140 496 192 0 0 chr3 19343001 19343074 -198694084 - AluS SINE Alu -238 74 2 647 220 43 105 chr3 19343147 19343336 -198693822 - MIR SINE MIR -2 260 83 2138 116 3 0 chr3 19343336 19343646 -198693512 + AluSq SINE Alu 11 313 0 647 220 43 105 chr3 19343646 19343685 -198693473 - MIR SINE MIR -179 83 43 1050 119 94 5 chr3 19343907 19344108 -198693050 + L1MA8 LINE L1 6053 6271 -20 1549 201 3 28 chr3 19344108 19344427 -198692731 - AluJo SINE Alu -1 311 1 465 207 47 35 chr3 19345248 19345415 -198691743 + MIR SINE MIR 9 143 -65 611 274 86 5 chr3 19345515 19345701 -198691457 - MIR SINE MIR -55 207 7 761 185 23 0 chr3 19346109 19346239 -198690919 - FLAM_A SINE Alu 0 133 1 2424 93 0 3 chr3 19346364 19346664 -198690494 - AluSx SINE Alu -13 299 1 1848 169 0 29 chr3 19347086 19347394 -198689764 - AluJo SINE Alu -13 299 1 23 33 0 0 chr3 19347396 19347426 -198689732 + AT_rich Low_complexity Low_complexity 1 30 0 191 261 11 45 chr3 19347602 19347690 -198689468 - L2 LINE L2 -1110 2204 2120 * 253 323 157 0 chr3 19347633 19347785 -198689373 + MIR SINE MIR 8 181 -63 359 283 92 17 chr3 19348907 19349080 -198688078 - Charlie8 DNA MER1_type -2129 288 103 2261 109 0 0 chr3 19349087 19349380 -198687778 + AluSc SINE Alu 1 293 -16 269 250 24 0 chr3 19349394 19349478 -198687680 - HsTC2 DNA Tc2 -2 1896 1811 1763 30 0 0 chr3 19349623 19349820 -198687338 + AluY SINE Alu 101 297 -14 996 168 15 30 chr3 19349886 19350089 -198687069 + MER3 DNA MER1_type 10 209 0 534 281 97 51 chr3 19350112 19350404 -198686754 - L2 LINE L2 -70 3243 2933 2547 53 3 3 chr3 19350404 19350706 -198686452 + AluY SINE Alu 1 302 -9 534 281 97 51 chr3 19350706 19350744 -198686414 - L2 LINE L2 -380 2933 2898 2623 43 3 0 chr3 19350756 19351056 -198686102 + AluY SINE Alu 1 301 -10 290 181 69 55 chr3 19351104 19351195 -198685963 + MIR3 SINE MIR 95 196 -35 2163 120 10 7 chr3 19351310 19351609 -198685549 - AluSx SINE Alu -12 300 1 671 82 48 0 chr3 19351674 19351821 -198685337 + GA-rich Low_complexity Low_complexity 1 154 0 328 275 101 40 chr3 19352356 19352505 -198684653 - L1ME3A LINE L1 -8 6162 6005 562 231 266 8 chr3 19352592 19352768 -198684390 + L2 LINE L2 2886 3015 -298 2150 103 59 0 chr3 19352768 19353058 -198684100 - AluSq SINE Alu -6 307 1 562 231 266 8 chr3 19353058 19353137 -198684021 + L2 LINE L2 3015 3207 -106 931 207 5 11 chr3 19353138 19353326 -198683832 - MER20 DNA MER1_type 0 219 33 2158 113 3 3 chr3 19353510 19353801 -198683357 + AluSx SINE Alu 1 291 -21 261 197 0 0 chr3 19353806 19353882 -198683276 + (TGAA)n Simple_repeat Simple_repeat 4 79 0 2289 106 0 0 chr3 19354017 19354309 -198682849 + AluSx SINE Alu 21 312 0 330 282 18 59 chr3 19354341 19354511 -198682647 + L2 LINE L2 1761 1923 -1391 683 254 18 0 chr3 19354519 19354688 -198682470 + L1MEc LINE L1 50 221 -6175 549 189 92 67 chr3 19354708 19354832 -198682326 + MLT1A2 LTR MaLR 1 131 -259 2518 72 0 3 chr3 19354832 19355136 -198682022 + AluY SINE Alu 1 303 -8 549 189 92 67 chr3 19355136 19355175 -198681983 + MLT1A2 LTR MaLR 131 168 -222 776 252 14 32 chr3 19355175 19355393 -198681765 + AluJo SINE Alu 81 294 -18 835 171 0 25 chr3 19355440 19355598 -198681560 + MLT1A2 LTR MaLR 189 342 -32 1169 155 0 27 chr3 19355598 19355785 -198681373 - AluJo SINE Alu -9 303 122 603 289 35 20 chr3 19355808 19356009 -198681149 + L1MEc LINE L1 254 457 -5939 1204 137 0 6 chr3 19356075 19356250 -198680908 - AluSg/x SINE Alu -5 305 132 2281 104 14 0 chr3 19356250 19356420 -198680738 - AluSq SINE Alu -12 301 124 183 80 0 0 chr3 19356420 19356445 -198680713 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 2281 104 14 0 chr3 19356445 19356571 -198680587 - AluSq SINE Alu -189 124 1 326 304 48 126 chr3 19356573 19357010 -198680148 + L2 LINE L2 1987 2389 -925 657 249 119 79 chr3 19357048 19357442 -198679716 + MLT1J LTR MaLR 99 508 -3 491 321 88 10 chr3 19357508 19357804 -198679354 - MLT1K LTR MaLR -14 574 256 373 246 79 0 chr3 19357805 19357919 -198679239 - MLT1H LTR MaLR -1 548 426 316 342 11 31 chr3 19357919 19358189 -198678969 + GA-rich Low_complexity Low_complexity 1 264 0 396 247 47 13 chr3 19358190 19358340 -198678818 - MLT1H LTR MaLR -316 233 79 2569 170 40 4 chr3 19358663 19359168 -198677990 - L1MB4 LINE L1 -6 6174 5652 523 42 28 0 chr3 19359170 19359242 -198677916 - AluY SINE Alu -6 304 231 358 20 0 40 chr3 19359245 19359295 -198677863 + AluSq/x SINE Alu 88 135 -167 2205 115 3 7 chr3 19359295 19359591 -198677567 + AluSq SINE Alu 1 295 -18 926 292 118 7 chr3 19359766 19360180 -198676978 - LTR16B LTR ERVL -4 460 1 195 309 29 15 chr3 19360207 19360275 -198676883 + L2 LINE L2 2690 2758 -556 539 195 23 0 chr3 19360453 19360540 -198676618 - AluSp/q SINE Alu -9 304 216 1943 163 0 0 chr3 19360640 19360940 -198676218 + AluJb SINE Alu 9 308 -4 294 95 0 0 chr3 19361826 19361868 -198675290 + (GAAA)n Simple_repeat Simple_repeat 2 43 0 1009 112 0 8 chr3 19361869 19362003 -198675155 + AluJb SINE Alu 1 133 -179 2330 87 3 0 chr3 19362006 19362304 -198674854 + AluY SINE Alu 1 299 -12 752 269 68 17 chr3 19362814 19363048 -198674110 - MIR SINE MIR -2 260 15 191 262 0 0 chr3 19363096 19363138 -198674020 - MIR SINE MIR -9 253 212 559 241 61 50 chr3 19363210 19363242 -198673916 - L1ME4a LINE L1 -1 6120 6090 2167 141 3 0 chr3 19363242 19363554 -198673604 + AluSq SINE Alu 1 313 0 559 241 61 50 chr3 19363554 19363783 -198673375 - L1ME4a LINE L1 -31 6090 5856 427 290 152 37 chr3 19365062 19365124 -198672034 - HAL1b LINE L1 -6 1342 1289 1979 147 0 27 chr3 19365124 19365423 -198671735 - AluSq SINE Alu -21 292 2 427 290 152 37 chr3 19365423 19365515 -198671643 - HAL1b LINE L1 -59 1289 1209 1976 152 3 3 chr3 19365515 19365805 -198671353 - AluJb SINE Alu -22 290 1 427 290 152 37 chr3 19365805 19365866 -198671292 - HAL1b LINE L1 -139 1209 1101 264 86 0 138 chr3 19365904 19365943 -198671215 + MSTB2 LTR MaLR 361 391 -66 2411 106 0 0 chr3 19365943 19366254 -198670904 - AluSx SINE Alu -1 311 1 264 86 0 138 chr3 19366254 19366272 -198670886 + MSTB2 LTR MaLR 391 410 -47 338 232 14 0 chr3 19366308 19366377 -198670781 + L2 LINE L2 3232 3301 -12 358 260 19 19 chr3 19366377 19366531 -198670627 + L1ME4a LINE L1 5968 6121 0 191 333 0 26 chr3 19367193 19367271 -198669887 + MIR3 SINE MIR 112 187 -21 862 188 75 11 chr3 19367381 19367567 -198669591 + MIR SINE MIR 56 253 -9 2418 100 0 3 chr3 19367684 19367993 -198669165 + AluSx SINE Alu 1 308 -4 791 216 39 39 chr3 19368137 19368345 -198668813 - MIR SINE MIR -4 258 51 354 129 0 0 chr3 19368713 19368775 -198668383 + (GGA)n Simple_repeat Simple_repeat 2 63 0 2507 63 0 0 chr3 19369081 19369380 -198667778 - AluY SINE Alu -12 299 1 912 137 8 0 chr3 19370199 19370330 -198666828 - FLAM_C SINE Alu -1 132 1 771 194 0 8 chr3 19370669 19370803 -198666355 - FLAM_A SINE Alu 0 133 1 591 177 223 29 chr3 19370823 19370998 -198666160 - MER20 DNA MER1_type -4 215 7 718 203 34 14 chr3 19371052 19371200 -198665958 + MIR SINE MIR 34 184 -78 2404 74 7 3 chr3 19371336 19371634 -198665524 - AluSg SINE Alu -11 299 1 1021 155 14 0 chr3 19372153 19372301 -198664857 - FRAM SINE Alu -18 158 9 260 378 41 0 chr3 19372307 19372405 -198664753 + L2 LINE L2 3136 3237 -35 533 250 100 6 chr3 19372413 19372573 -198664585 - MIR SINE MIR -1 261 87 2211 104 0 19 chr3 19372573 19372889 -198664269 + AluSg SINE Alu 1 310 0 2149 127 6 22 chr3 19373232 19373579 -198663579 - AluJb SINE Alu 0 342 1 290 253 27 27 chr3 19373590 19373665 -198663493 - MIR SINE MIR -63 145 70 328 254 45 45 chr3 19374002 19374136 -198663022 - MIR SINE MIR -68 194 61 1912 49 0 9 chr3 19374143 19374397 -198662761 + AluY SINE Alu 60 311 0 255 208 62 0 chr3 19374519 19374567 -198662591 + L2 LINE L2 3213 3263 -9 338 338 114 43 chr3 19374571 19374991 -198662167 + L3 LINE CR1 935 1384 -193 566 154 22 22 chr3 19374999 19375135 -198662023 + CT-rich Low_complexity Low_complexity 1 136 0 834 189 0 13 chr3 19375158 19375470 -198661688 - FRAM SINE Alu 0 176 26 821 315 82 16 chr3 19375658 19376109 -198661049 + Charlie7 DNA MER1_type 60 540 -2072 211 219 0 0 chr3 19376362 19376403 -198660755 + (TATATG)n Simple_repeat Simple_repeat 1 41 0 320 188 0 12 chr3 19376782 19376867 -198660291 + CT-rich Low_complexity Low_complexity 1 84 0 236 143 18 0 chr3 19376892 19376948 -198660210 + (CA)n Simple_repeat Simple_repeat 2 58 0 307 293 0 49 chr3 19376999 19377122 -198660036 + MIR SINE MIR 31 141 -67 2290 157 15 34 chr3 19377123 19377245 -198659913 + L1M4 LINE L1 5280 5403 -781 2347 90 3 3 chr3 19377245 19377544 -198659614 + AluSp SINE Alu 3 301 -12 2290 157 15 34 chr3 19377544 19377887 -198659271 + L1M4 LINE L1 5403 5736 -448 1329 105 0 6 chr3 19377887 19378059 -198659099 - AluSx SINE Alu -141 171 1 433 96 14 0 chr3 19378059 19378132 -198659026 + L1MB7 LINE L1 6111 6184 0 458 259 43 14 chr3 19378907 19379046 -198658112 - MIR3 SINE MIR -6 202 60 252 143 0 0 chr3 19379145 19379187 -198657971 - MIR SINE MIR -174 88 47 1080 226 190 26 chr3 19380162 19380850 -198656308 + L2 LINE L2 2463 3292 -21 1989 144 17 0 chr3 19380850 19381142 -198656016 - AluJo SINE Alu -15 297 1 1080 226 190 26 chr3 19381142 19381169 -198655989 + L2 LINE L2 3292 3313 0 2039 159 0 3 chr3 19381430 19381739 -198655419 + AluSx SINE Alu 3 310 -2 1095 141 63 74 chr3 19381846 19382073 -198655085 + MER33 DNA MER1_type 1 211 -2374 1715 168 13 30 chr3 19382073 19382376 -198654782 - AluJo SINE Alu -14 298 1 1095 141 63 74 chr3 19382376 19382444 -198654714 + MER33 DNA MER1_type 211 278 -46 393 284 89 35 chr3 19382603 19382772 -198654386 + L3 LINE CR1 1301 1478 -99 813 191 28 51 chr3 19382805 19382983 -198654175 + MER5A DNA MER1_type 7 180 -9 2567 43 13 3 chr3 19382987 19383288 -198653870 + AluY SINE Alu 1 304 -7 214 233 0 0 chr3 19383294 19383337 -198653821 + MIR SINE MIR 218 260 -2 244 270 203 27 chr3 19383717 19383865 -198653293 + MIR SINE MIR 82 255 -7 2300 107 10 3 chr3 19384011 19384319 -198652839 - AluSx SINE Alu -2 310 1 463 291 0 4 chr3 19384413 19384549 -198652609 - MIR SINE MIR -65 143 19 241 224 30 60 chr3 19384741 19384808 -198652350 + MIR SINE MIR 100 164 -98 2168 104 52 0 chr3 19384974 19385262 -198651896 - AluSx SINE Alu -9 303 1 22 0 0 0 chr3 19385267 19385289 -198651869 + AT_rich Low_complexity Low_complexity 1 22 0 2368 71 20 7 chr3 19385672 19385968 -198651190 - AluY SINE Alu -11 300 1 1660 163 4 14 chr3 19385970 19386246 -198650912 - AluJb SINE Alu -21 291 19 1852 181 34 32 chr3 19386347 19386789 -198650369 - pTR5 LTR ERV1 -1254 1184 742 1108 174 0 20 chr3 19386878 19387073 -198650085 + AluJo SINE Alu 5 195 -117 225 276 153 0 chr3 19387142 19387240 -198649918 - MER113 DNA MER1_type? -31 490 378 875 194 55 0 chr3 19387240 19387405 -198649753 + MIR SINE MIR 3 176 -86 642 228 14 84 chr3 19387441 19387726 -198649432 - MER113 DNA MER1_type? -137 384 120 1406 59 0 0 chr3 19387734 19387904 -198649254 + L1PA11 LINE L1 6002 6171 -3 25 31 0 0 chr3 19387907 19387939 -198649219 + AT_rich Low_complexity Low_complexity 1 32 0 8322 56 4 10 chr3 19387963 19388976 -198648182 + LTR13 LTR ERVK 1 1007 0 2231 118 17 0 chr3 19389005 19389302 -198647856 + AluSx SINE Alu 3 304 -8 271 189 44 22 chr3 19389304 19389394 -198647764 - MER113 DNA MER1_type? -422 99 8 272 279 90 39 chr3 19389642 19389735 -198647423 + L1MC5 LINE L1 7612 7699 -262 2132 133 3 0 chr3 19389735 19390028 -198647130 + AluSx SINE Alu 1 293 -19 272 279 90 39 chr3 19390028 19390167 -198646991 + L1MC5 LINE L1 7699 7856 -105 463 236 5 5 chr3 19390523 19390662 -198646496 + GA-rich Low_complexity Low_complexity 1 139 -480 2350 169 69 5 chr3 19390662 19391095 -198646063 - LOR1b LTR ERV1 0 461 1 463 236 5 5 chr3 19391095 19391142 -198646016 + GA-rich Low_complexity Low_complexity 138 619 0 1538 198 79 5 chr3 19391459 19391897 -198645261 - MLT2B1 LTR ERVL 0 520 2 504 263 102 34 chr3 19392003 19392208 -198644950 - MIR SINE MIR -37 225 7 301 331 75 30 chr3 19392432 19392565 -198644593 + MIR3 SINE MIR 8 146 -62 239 234 0 0 chr3 19393074 19393121 -198644037 - L2 LINE L2 -19 3294 3248 2202 101 59 42 chr3 19393333 19393691 -198643467 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr3 19393769 19393790 -198643368 + AT_rich Low_complexity Low_complexity 1 21 0 344 250 32 26 chr3 19393806 19393962 -198643196 - L1ME4a LINE L1 -14 6107 5951 230 292 0 0 chr3 19394559 19394624 -198642534 - MER58 DNA MER1_type 0 2420 2356 192 40 0 0 chr3 19394640 19394665 -198642493 + (TGG)n Simple_repeat Simple_repeat 3 27 0 1749 184 18 21 chr3 19394667 19395052 -198642106 + MER65C LTR ERV1 78 461 0 253 261 0 46 chr3 19395084 19395149 -198642009 - MER58 DNA MER1_type -166 58 1 2272 90 0 3 chr3 19395598 19395898 -198641260 - AluY SINE Alu -7 304 6 21 36 0 0 chr3 19395898 19395926 -198641232 + AT_rich Low_complexity Low_complexity 1 28 0 1901 93 0 4 chr3 19395948 19396207 -198640951 + AluY SINE Alu 54 311 0 2429 180 32 30 chr3 19396234 19396296 -198640862 + L1MC3 LINE L1 4941 5001 -1145 1742 162 53 3 chr3 19396296 19396580 -198640578 + AluSx SINE Alu 1 298 -14 2429 180 32 30 chr3 19396580 19396723 -198640435 + L1MC3 LINE L1 5001 5142 -1004 2197 97 0 0 chr3 19396723 19397041 -198640117 - AluSc SINE Alu 0 309 1 2429 180 32 30 chr3 19397041 19397306 -198639852 + L1MC3 LINE L1 5142 4985 -1161 2221 86 20 0 chr3 19397306 19397598 -198639560 - AluSx SINE Alu -14 298 1 2429 180 32 30 chr3 19397598 19398019 -198639139 + L1MC3 LINE L1 4984 5403 -743 2569 137 169 20 chr3 19398063 19398618 -198638540 - MER67B LTR ERV1 -22 639 2 301 274 12 0 chr3 19398760 19398844 -198638314 - MLT1J LTR MaLR -354 157 73 408 302 33 33 chr3 19399437 19399619 -198637539 + Charlie8 DNA MER1_type 1 182 -2235 205 245 306 0 chr3 19400312 19400410 -198636748 - L2 LINE L2 0 3272 3145 913 245 5 0 chr3 19400430 19400618 -198636540 + MIR SINE MIR 14 202 -60 361 211 167 0 chr3 19400658 19400748 -198636410 - L2 LINE L2 -6 3266 3162 326 309 134 7 chr3 19401510 19401659 -198635499 + MIR SINE MIR 35 202 -60 314 289 10 21 chr3 19401663 19401760 -198635398 - L2 LINE L2 -39 3274 3179 181 319 69 26 chr3 19401970 19402086 -198635072 - MIR SINE MIR -70 192 72 1635 161 4 18 chr3 19402224 19402518 -198634640 - AluJo SINE Alu 0 304 15 424 285 95 14 chr3 19402669 19402890 -198634268 + L2 LINE L2 2158 2396 -918 588 100 0 0 chr3 19403101 19403191 -198633967 - AluY SINE Alu 0 312 223 1332 63 0 0 chr3 19403192 19403350 -198633808 - AluY SINE Alu -153 158 1 392 256 20 28 chr3 19403351 19403555 -198633603 + L2 LINE L2 2688 2962 -351 248 280 248 0 chr3 19404303 19404428 -198632730 + L2 LINE L2 3010 3165 -148 1219 211 37 9 chr3 19404430 19404753 -198632405 - L1MB7 LINE L1 -9 6175 5844 400 372 50 35 chr3 19404803 19405257 -198631901 + L2 LINE L2 2817 3312 -1 491 307 78 43 chr3 19406063 19406240 -198630918 + MIR SINE MIR 20 208 -54 2610 49 0 0 chr3 19406240 19406548 -198630610 + AluY SINE Alu 1 308 -3 491 307 78 43 chr3 19406548 19406601 -198630557 + MIR SINE MIR 208 258 -4 272 327 59 39 chr3 19406723 19406876 -198630282 + L2 LINE L2 2896 3051 -262 231 214 0 0 chr3 19407001 19407043 -198630115 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 328 306 58 8 chr3 19407103 19407224 -198629934 + L2 LINE L2 3185 3311 -2 552 214 44 38 chr3 19407988 19408147 -198629011 - MER5A DNA MER1_type -18 171 12 342 296 143 42 chr3 19408641 19408830 -198628328 + MIR SINE MIR 22 229 -33 1007 246 70 56 chr3 19409267 19409624 -198627534 - MLT1K LTR MaLR -144 444 83 185 309 157 31 chr3 19409927 19410118 -198627040 + L3 LINE CR1 1347 1561 -16 409 295 70 0 chr3 19410430 19410630 -198626528 - L2 LINE L2 -288 3025 2812 222 250 0 0 chr3 19410765 19410813 -198626345 + L2 LINE L2 2999 3046 -267 591 332 60 7 chr3 19411997 19412295 -198624863 - L2 LINE L2 -2 3311 2998 218 303 15 0 chr3 19412639 19412705 -198624453 + L2 LINE L2 3201 3267 -5 299 326 90 14 chr3 19412987 19413131 -198624027 - L2 LINE L2 0 3313 3159 1743 182 10 75 chr3 19413132 19413157 -198624001 - L1MB7 LINE L1 -18 6166 6141 2388 65 0 10 chr3 19413157 19413467 -198623691 - AluY SINE Alu -4 307 1 1743 182 10 75 chr3 19413467 19413809 -198623349 - L1MB7 LINE L1 -43 6141 5835 1733 148 14 31 chr3 19413809 19414099 -198623059 - AluJb SINE Alu -23 289 5 1743 182 10 75 chr3 19414099 19414209 -198622949 - L1MB7 LINE L1 -349 5835 5719 187 320 51 0 chr3 19414472 19414550 -198622608 - L2 LINE L2 -1384 1930 1849 534 271 118 50 chr3 19414573 19414956 -198622202 - L2 LINE L2 -351 2963 2555 1581 206 88 29 chr3 19415360 19415734 -198621424 + MSTD LTR MaLR 1 396 0 311 243 103 0 chr3 19415734 19415841 -198621317 - MER113 DNA MER1_type? -337 184 67 291 164 73 0 chr3 19415924 19415979 -198621179 - MIR SINE MIR -55 153 95 665 315 156 8 chr3 19416393 19416777 -198620381 - L2 LINE L2 0 3313 2873 291 293 80 17 chr3 19417162 19417310 -198619848 - MIR SINE MIR -52 156 3 257 309 200 36 chr3 19417925 19418145 -198619013 - L3 LINE CR1 -10 1567 1312 395 288 25 0 chr3 19418148 19418266 -198618892 + MIR SINE MIR 62 182 -80 351 383 158 8 chr3 19418315 19418681 -198618477 - L3 LINE CR1 -226 1351 931 548 241 85 0 chr3 19418847 19418988 -198618170 + L2 LINE L2 3119 3271 -1 323 339 45 0 chr3 19419513 19419625 -198617533 - L2 LINE L2 -4 3309 3193 271 306 45 36 chr3 19419623 19419734 -198617424 - MIR SINE MIR -29 233 122 * 505 228 41 28 chr3 19419900 19420045 -198617113 - MIR3 SINE MIR -59 149 3 528 340 130 20 chr3 19420206 19420762 -198616396 - L2 LINE L2 0 3272 2637 302 285 248 7 chr3 19421129 19421266 -198615892 - MIR SINE MIR -35 227 58 210 286 83 12 chr3 19421300 19421384 -198615774 - MER91C DNA MER1_type -30 110 21 413 350 51 0 chr3 19421453 19421670 -198615488 - MIR SINE MIR -14 248 21 502 259 108 67 chr3 19421796 19421828 -198615330 - L1ME4a LINE L1 -34 6087 6058 1594 220 0 0 chr3 19421828 19422133 -198615025 + AluJo SINE Alu 1 305 -7 502 259 108 67 chr3 19422133 19422517 -198614641 - L1ME4a LINE L1 -63 6058 5654 223 378 67 0 chr3 19423049 19423303 -198613855 + L2 LINE L2 2520 2790 -524 372 357 21 0 chr3 19423321 19423464 -198613694 + L2 LINE L2 2914 3059 -213 268 340 20 0 chr3 19425865 19425965 -198611193 + L1ME4a LINE L1 5846 5947 -223 995 138 88 0 chr3 19426207 19426366 -198610792 + FAM SINE Alu 2 174 -1 226 257 27 0 chr3 19426437 19426511 -198610647 + L1ME4a LINE L1 5940 6015 -106 205 229 98 0 chr3 19427911 19427971 -198609187 + MIR3 SINE MIR 102 167 -41 209 316 173 42 chr3 19427971 19428139 -198609019 + MIR SINE MIR 3 192 -70 461 262 41 0 chr3 19428445 19428567 -198608591 + MIR3 SINE MIR 37 163 -45 400 246 232 7 chr3 19428720 19428862 -198608296 + MIR SINE MIR 13 186 -76 186 226 75 0 chr3 19428885 19428938 -198608220 - MIR SINE MIR -87 175 119 352 296 176 39 chr3 19429016 19429351 -198607807 + L2 LINE L2 2842 3222 -91 254 368 56 0 chr3 19429508 19429652 -198607506 - MIR SINE MIR -89 173 22 27 0 0 0 chr3 19429784 19429811 -198607347 + GC_rich Low_complexity Low_complexity 1 27 0 292 256 37 12 chr3 19432057 19432139 -198605019 - MIR SINE MIR -73 189 106 422 259 43 0 chr3 19432243 19432359 -198604799 - MER5B DNA MER1_type -48 130 10 432 235 45 30 chr3 19433019 19433151 -198604007 - MIR SINE MIR -50 212 79 513 269 61 9 chr3 19434569 19434781 -198602377 - L2 LINE L2 -214 3058 2836 362 263 30 0 chr3 19436277 19436376 -198600782 + MIR SINE MIR 41 142 -66 240 308 42 49 chr3 19436494 19436637 -198600521 - L2 LINE L2 0 3313 3172 233 231 0 0 chr3 19437128 19437180 -198599978 - L1M2 LINE L1 -488 5824 5773 * 3286 187 32 6 chr3 19437174 19437884 -198599274 - L1MB3 LINE L1 -41 6142 5414 840 318 88 12 chr3 19438597 19439087 -198598071 + MER20B DNA MER1_type 207 733 -50 820 226 39 81 chr3 19439115 19439447 -198597711 + L1MD2 LINE L1 6041 6358 -1 421 290 57 0 chr3 19440929 19441053 -198596105 + MIR SINE MIR 68 198 -64 234 0 0 0 chr3 19441170 19441196 -198595962 + (GGGAA)n Simple_repeat Simple_repeat 1 26 0 377 248 28 21 chr3 19441426 19441571 -198595587 - MLT1K LTR MaLR -356 232 87 345 378 52 12 chr3 19443181 19443353 -198593805 + MIR SINE MIR 68 246 -16 216 343 57 0 chr3 19443460 19443530 -198593628 + L2 LINE L2 3129 3202 -70 1588 175 31 7 chr3 19443621 19443913 -198593245 - AluJo SINE Alu -7 305 7 376 327 9 0 chr3 19444847 19444957 -198592201 + MIR SINE MIR 73 183 -79 2187 114 0 0 chr3 19445096 19445402 -198591756 - AluSx SINE Alu -6 306 1 202 333 28 9 chr3 19445679 19445787 -198591371 + MIR SINE MIR 9 119 -89 220 278 15 105 chr3 19446751 19446884 -198590274 - L2 LINE L2 -1803 1511 1391 * 419 212 62 18 chr3 19446814 19446927 -198590231 + MIR SINE MIR 75 192 -70 338 226 86 0 chr3 19447854 19447947 -198589211 + MIR SINE MIR 115 215 -47 253 176 20 0 chr3 19448039 19448090 -198589068 - MIR3 SINE MIR -49 159 108 293 243 27 14 chr3 19448483 19448557 -198588601 - MIR SINE MIR -107 155 81 264 267 37 30 chr3 19449447 19449582 -198587576 + L1ME4a LINE L1 5979 6114 -7 336 349 18 0 chr3 19450101 19450210 -198586948 + L1MD2 LINE L1 5326 5436 -806 2332 283 76 9 chr3 19450617 19451486 -198585672 + L1MD2 LINE L1 5426 6352 -7 243 293 37 12 chr3 19451508 19451590 -198585568 - MER5B DNA MER1_type -94 84 1 196 172 172 0 chr3 19451593 19451651 -198585507 - MIR SINE MIR -58 150 83 634 268 49 32 chr3 19451773 19452019 -198585139 - L1ME3A LINE L1 -4 6166 5917 279 313 0 12 chr3 19452354 19452482 -198584676 + MIR SINE MIR 79 203 -59 808 219 145 26 chr3 19452601 19452829 -198584329 - MIR SINE MIR 0 262 8 272 208 56 0 chr3 19453583 19453655 -198583503 + MIR SINE MIR 187 262 0 186 240 0 0 chr3 19453674 19453724 -198583434 + GA-rich Low_complexity Low_complexity 2 51 0 208 264 0 28 chr3 19453758 19453830 -198583328 - L2 LINE L2 -237 3035 2966 216 378 12 0 chr3 19453852 19453934 -198583224 + MIR SINE MIR 109 191 -71 525 283 7 0 chr3 19455173 19455311 -198581847 - MIR SINE MIR -91 171 33 257 345 36 29 chr3 19455508 19455647 -198581511 + MIR3 SINE MIR 20 159 -49 195 311 198 0 chr3 19456799 19456905 -198580253 + L3 LINE CR1 1371 1497 -80 374 255 301 52 chr3 19457958 19458307 -198578851 - L2 LINE L2 -7 3306 2871 208 277 30 79 chr3 19458329 19458430 -198578728 - MIR SINE MIR -55 207 112 208 322 11 56 chr3 19458416 19458506 -198578652 - MIR3 SINE MIR -110 98 13 193 320 31 41 chr3 19458858 19458955 -198578203 + MIR3 SINE MIR 87 182 -26 991 149 79 60 chr3 19458994 19459209 -198577949 - MER20B DNA MER1_type 0 219 1 200 213 33 49 chr3 19459460 19459521 -198577637 + MIR SINE MIR 108 167 -95 213 317 91 58 chr3 19459693 19459936 -198577222 - L2 LINE L2 -81 3232 2982 329 277 146 7 chr3 19461516 19461653 -198575505 + MIR3 SINE MIR 7 162 -46 388 312 21 16 chr3 19462552 19462741 -198574417 - L2 LINE L2 -227 3045 2856 338 368 85 27 chr3 19462998 19463327 -198573831 - L2 LINE L2 -101 3171 2824 421 340 45 13 chr3 19463374 19463530 -198573628 - MIR SINE MIR -79 183 23 704 110 0 0 chr3 19464482 19464582 -198572576 - L1MA1 LINE L1 0 6302 6203 254 271 12 35 chr3 19464599 19464684 -198572474 - L1MC/D LINE L1 -767 5577 5495 2309 108 24 19 chr3 19464686 19465104 -198572054 - L1MA1 LINE L1 -101 6201 5782 388 242 87 17 chr3 19465111 19465268 -198571890 - L1MC4 LINE L1 -1339 6983 1977 587 336 47 39 chr3 19465278 19465355 -198571803 - L1ME3A LINE L1 -206 5964 5889 2915 145 45 4 chr3 19465355 19465844 -198571314 - L1MB3 LINE L1 -3 6180 5672 587 336 47 39 chr3 19465844 19466254 -198570904 - L1ME3A LINE L1 -281 5889 5473 29 47 0 0 chr3 19466906 19466949 -198570209 + AT_rich Low_complexity Low_complexity 1 43 0 595 229 83 13 chr3 19466949 19467106 -198570052 - MIR SINE MIR -11 251 84 1341 264 140 42 chr3 19467206 19467748 -198569410 - MLT1G1 LTR MaLR 0 595 1 923 179 45 0 chr3 19469233 19469434 -198567724 + MLT1B LTR MaLR 1 210 -180 * 1139 258 136 18 chr3 19469432 19469844 -198567314 + MLT2B1 LTR ERVL 8 481 -39 225 94 0 0 chr3 19469844 19469876 -198567282 + (TA)n Simple_repeat Simple_repeat 2 33 0 1139 258 136 18 chr3 19469876 19469920 -198567238 + MLT2B1 LTR ERVL 481 518 -2 900 156 75 0 chr3 19469922 19470095 -198567063 + MLT1B LTR MaLR 205 390 0 466 170 85 0 chr3 19470217 19470323 -198566835 - MER96B DNA MER1_type? 0 417 303 25 31 0 0 chr3 19470488 19470520 -198566638 + AT_rich Low_complexity Low_complexity 1 32 0 2367 40 0 4 chr3 19470521 19470799 -198566359 + AluY SINE Alu 21 297 -14 896 272 32 49 chr3 19471069 19471446 -198565712 + L1MC4 LINE L1 6258 8042 0 668 262 112 35 chr3 19471525 19471811 -198565347 + L2 LINE L2 3005 3312 -1 291 259 27 80 chr3 19471830 19471942 -198565216 + MIR SINE MIR 33 138 -70 736 225 84 0 chr3 19472225 19472403 -198564755 - MER113 DNA MER1_type? -212 309 117 834 275 69 0 chr3 19472628 19472904 -198564254 - L1MC5 LINE L1 -365 7596 7302 21 36 0 0 chr3 19472914 19472942 -198564216 + AT_rich Low_complexity Low_complexity 1 28 0 1755 158 10 10 chr3 19472985 19473276 -198563882 + AluSx SINE Alu 1 291 -21 728 219 0 0 chr3 19473285 19473413 -198563745 + FLAM_C SINE Alu 5 132 -1 274 243 14 14 chr3 19473643 19473713 -198563445 + (CACG)n Simple_repeat Simple_repeat 2 71 0 218 289 37 67 chr3 19473812 19473937 -198563221 + L3b LINE CR1 1275 1395 -188 594 317 74 16 chr3 19473937 19474180 -198562978 + MIR SINE MIR 4 260 -2 375 252 45 65 chr3 19474342 19474497 -198562661 - MIR SINE MIR -69 193 42 327 341 22 7 chr3 19474459 19474594 -198562564 + MIR3 SINE MIR 23 159 -49 * 232 284 54 14 chr3 19475073 19475147 -198562011 + MIR3 SINE MIR 89 165 -43 290 321 221 28 chr3 19475155 19475404 -198561754 - L2 LINE L2 0 3272 2976 469 278 103 52 chr3 19475423 19475617 -198561541 + Charlie8 DNA MER1_type 39 242 -2175 738 263 114 26 chr3 19475641 19475949 -198561209 + L2 LINE L2 2360 2694 -620 225 0 0 0 chr3 19476490 19476515 -198560643 + (A)n Simple_repeat Simple_repeat 1 25 0 197 154 0 26 chr3 19476938 19476977 -198560181 - L2 LINE L2 -227 3045 3008 359 282 169 16 chr3 19477036 19477355 -198559803 - LTR33 LTR ERVL -67 454 87 239 305 34 90 chr3 19478236 19478413 -198558745 - MIR SINE MIR -17 245 79 280 359 29 0 chr3 19478419 19478522 -198558636 - MIR SINE MIR -71 191 86 996 121 11 6 chr3 19478638 19478812 -198558346 + (TGGA)n Simple_repeat Simple_repeat 4 178 0 975 234 6 0 chr3 19478873 19479187 -198557971 + (TGGA)n Simple_repeat Simple_repeat 1 316 0 416 291 78 107 chr3 19479285 19479556 -198557602 + L3 LINE CR1 1292 1554 -23 182 227 100 7 chr3 19479750 19479849 -198557309 + MIR SINE MIR 33 143 -65 619 311 50 27 chr3 19480219 19480438 -198556720 + MIR SINE MIR 23 246 -16 194 310 70 0 chr3 19481627 19481727 -198555431 + MIR SINE MIR 79 185 -77 503 251 204 24 chr3 19481757 19481968 -198555190 + MIR SINE MIR 13 261 -1 375 171 0 0 chr3 19482404 19482480 -198554678 + CT-rich Low_complexity Low_complexity 1 76 0 1080 152 30 0 chr3 19482544 19482708 -198554450 + FAM SINE Alu 1 169 -6 293 320 25 16 chr3 19484181 19484303 -198552855 + MIR SINE MIR 23 145 -117 251 260 29 58 chr3 19484446 19484550 -198552608 + MIR SINE MIR 13 113 -149 261 273 42 109 chr3 19485165 19485330 -198551828 - L3 LINE CR1 -125 1452 1299 211 356 107 13 chr3 19485393 19485542 -198551616 - L3 LINE CR1 -408 1169 1007 214 333 86 17 chr3 19485701 19485818 -198551340 - MIR SINE MIR -19 243 119 529 282 75 39 chr3 19485980 19486235 -198550923 - L2 LINE L2 -10 3303 3040 1709 197 93 17 chr3 19486235 19486642 -198550516 + L1MB8 LINE L1 5741 6178 0 296 284 191 38 chr3 19486649 19487046 -198550112 - L2 LINE L2 -265 3048 2592 265 266 0 13 chr3 19488141 19488220 -198548938 - MIR SINE MIR -80 182 105 330 292 77 23 chr3 19488943 19489073 -198548085 + MIR SINE MIR 54 190 -72 604 287 58 22 chr3 19489556 19489779 -198547379 - L2 LINE L2 0 3313 3083 2095 73 11 0 chr3 19490144 19490419 -198546739 + AluSx SINE Alu 30 307 -5 182 294 47 24 chr3 19490421 19490506 -198546652 + MIR SINE MIR 39 125 -137 800 254 45 9 chr3 19490508 19490728 -198546430 - MLT1K LTR MaLR -4 584 357 212 256 0 0 chr3 19490733 19490776 -198546382 + L2 LINE L2 3214 3256 -16 297 278 43 108 chr3 19490800 19491077 -198546081 - L2 LINE L2 -29 3243 2985 391 278 119 20 chr3 19491813 19492029 -198545129 + MIR SINE MIR 24 262 0 25 31 0 0 chr3 19492038 19492070 -198545088 + AT_rich Low_complexity Low_complexity 1 32 0 545 248 122 45 chr3 19492656 19492902 -198544256 - MLT1K LTR MaLR -2 586 322 769 252 93 18 chr3 19492931 19493157 -198544001 - MLT1K LTR MaLR -332 256 14 570 270 74 12 chr3 19493280 19493443 -198543715 - MIR SINE MIR -88 174 2 249 159 0 0 chr3 19493691 19493735 -198543423 + (CA)n Simple_repeat Simple_repeat 2 45 0 346 280 11 0 chr3 19494114 19494207 -198542951 + MIR SINE MIR 49 142 -66 474 240 34 4 chr3 19494339 19494507 -198542651 + MIR SINE MIR 20 191 -65 191 264 199 69 chr3 19494651 19494928 -198542230 - L2 LINE L2 -34 3279 2967 190 302 0 0 chr3 19495388 19495441 -198541717 - MIR3 SINE MIR -14 194 142 393 307 78 20 chr3 19495759 19495912 -198541246 - MIR SINE MIR -64 198 37 244 226 51 0 chr3 19496343 19496408 -198540750 + MIR SINE MIR 87 148 -60 286 240 70 37 chr3 19496725 19496964 -198540194 - MLT1H LTR MaLR 0 549 216 379 258 178 19 chr3 19497061 19497274 -198539884 - MLT1H LTR MaLR -292 257 11 519 248 39 0 chr3 19497654 19497783 -198539375 - MER3 DNA MER1_type -4 205 72 229 233 221 12 chr3 19499011 19499097 -198538061 + L2 LINE L2 3208 3311 -2 1079 214 61 51 chr3 19499324 19499736 -198537422 - L1MC4 LINE L1 -3 8039 7624 3948 182 38 32 chr3 19499741 19500093 -198537065 - L1MB7 LINE L1 -13 6171 5823 727 125 62 23 chr3 19500093 19500221 -198536937 - FLAM_C SINE Alu 0 133 1 3948 182 38 32 chr3 19500221 19500804 -198536354 - L1MB7 LINE L1 -361 5823 5232 846 205 0 0 chr3 19500818 19500974 -198536184 - FRAM SINE Alu -8 168 13 1581 179 11 37 chr3 19500984 19501284 -198535874 - L1MB7 LINE L1 -940 5206 4917 2004 120 0 43 chr3 19501284 19501610 -198535548 - AluSx SINE Alu 0 312 1 1581 179 11 37 chr3 19501610 19501688 -198535470 - L1MB7 LINE L1 -1229 4917 4838 2019 119 0 32 chr3 19502129 19502440 -198534718 + AluSx SINE Alu 4 304 -8 362 327 62 19 chr3 19502444 19502606 -198534552 + MIR SINE MIR 90 258 -4 233 341 127 8 chr3 19502765 19502891 -198534267 - L2 LINE L2 -34 3238 3098 366 245 77 43 chr3 19503080 19503288 -198533870 - L1MC/D LINE L1 -2334 5474 5260 233 323 30 10 chr3 19503421 19503520 -198533638 - L2 LINE L2 -527 2787 2687 236 275 44 0 chr3 19504039 19504130 -198533028 - L3 LINE CR1 -108 1469 1375 273 313 67 47 chr3 19504145 19504295 -198532863 - MIR3 SINE MIR -21 187 35 24 0 0 0 chr3 19504735 19504759 -198532399 + AT_rich Low_complexity Low_complexity 1 24 0 536 260 8 8 chr3 19504759 19504882 -198532276 - FLAM_C SINE Alu -9 124 2 462 197 63 175 chr3 19504887 19505006 -198532152 - L1MC4a LINE L1 -1873 5935 5851 1936 163 0 3 chr3 19505006 19505319 -198531839 - AluJb SINE Alu 0 312 1 462 197 63 175 chr3 19505319 19505422 -198531736 - L1MC4a LINE L1 -1957 5851 5738 724 134 63 0 chr3 19505467 19505594 -198531564 + MER7A DNA MER2_type 2 134 -212 1280 132 15 0 chr3 19505689 19505893 -198531265 + MER7A DNA MER2_type 124 330 -6 278 236 45 0 chr3 19506165 19506254 -198530904 - L1MC4a LINE L1 -1883 5925 5833 562 302 75 20 chr3 19506402 19506707 -198530451 - L1MC4a LINE L1 -2232 5576 5255 289 279 7 93 chr3 19506910 19507050 -198530108 - MIR SINE MIR -54 208 81 1578 159 70 4 chr3 19507219 19507490 -198529668 - AluJo SINE Alu -23 289 1 472 221 168 0 chr3 19507806 19507955 -198529203 + MIR SINE MIR 52 225 -37 290 217 123 9 chr3 19508081 19508187 -198528971 - MIR3 SINE MIR -86 122 5 228 279 0 0 chr3 19508683 19508751 -198528407 + MIR SINE MIR 79 146 -116 23 33 0 0 chr3 19509135 19509165 -198527993 + GC_rich Low_complexity Low_complexity 1 30 0 45 104 0 0 chr3 19509206 19509370 -198527788 + GC_rich Low_complexity Low_complexity 1 164 0 22 70 0 0 chr3 19509398 19509441 -198527717 + GC_rich Low_complexity Low_complexity 1 43 0 320 284 35 0 chr3 19511142 19511258 -198525900 - MIR SINE MIR -58 150 31 189 0 0 0 chr3 19511491 19511512 -198525646 + (CCCTG)n Simple_repeat Simple_repeat 4 24 0 194 329 71 0 chr3 19512931 19513001 -198524157 + L2 LINE L2 3141 3215 -57 253 207 17 35 chr3 19513040 19513098 -198524060 + L3 LINE CR1 1393 1449 -128 229 288 0 0 chr3 19513505 19513571 -198523587 + MIR SINE MIR 82 147 -61 542 207 76 35 chr3 19513821 19513966 -198523192 + MIR SINE MIR 34 184 -78 631 226 22 39 chr3 19514087 19514268 -198522890 - L2 LINE L2 0 3313 3136 383 248 124 31 chr3 19514367 19514496 -198522662 + MIR3 SINE MIR 47 187 -21 530 282 36 60 chr3 19514758 19514948 -198522210 - L1ME3A LINE L1 -173 6001 5827 2221 106 0 3 chr3 19514948 19515260 -198521898 - AluSx SINE Alu -1 311 1 530 282 36 60 chr3 19515260 19515419 -198521739 - L1ME3A LINE L1 -347 5827 5666 499 296 108 18 chr3 19515451 19515933 -198521225 - L1ME3A LINE L1 -668 5502 4971 242 275 50 25 chr3 19516878 19516958 -198520200 - MIR SINE MIR -78 184 103 256 325 20 66 chr3 19517267 19517418 -198519740 + MIR SINE MIR 119 262 0 2579 45 0 0 chr3 19518268 19518576 -198518582 + AluY SINE Alu 1 308 -3 400 305 104 7 chr3 19518908 19519062 -198518096 + MER91A DNA MER1_type 11 179 -17 392 307 107 13 chr3 19519530 19519755 -198517403 - L2 LINE L2 0 3272 3027 181 360 40 0 chr3 19520427 19520527 -198516631 + MIR SINE MIR 27 130 -132 180 206 0 0 chr3 19520527 19520561 -198516597 + L2 LINE L2 3221 3254 -18 399 288 9 0 chr3 19520870 19520981 -198516177 + Charlie1 DNA MER1_type 59 170 -2591 555 188 86 8 chr3 19521023 19521151 -198516007 + Charlie1 DNA MER1_type 2624 2761 0 578 231 60 17 chr3 19522072 19522258 -198514900 - MIR SINE MIR -62 146 2 263 237 54 11 chr3 19522347 19522440 -198514718 - MLT1K LTR MaLR -8 580 484 444 247 115 11 chr3 19523121 19523295 -198513863 + MIR SINE MIR 51 242 -20 286 344 31 49 chr3 19523555 19523718 -198513440 - MER113 DNA MER1_type? -40 481 322 523 239 53 11 chr3 19524049 19524237 -198512921 - MER113 DNA MER1_type? -199 322 127 328 328 8 8 chr3 19524439 19524561 -198512597 + L2 LINE L2 2932 3053 -219 2164 89 3 29 chr3 19524658 19524974 -198512184 - AluSg SINE Alu -2 308 1 352 198 12 35 chr3 19525016 19525102 -198512056 - MER5A DNA MER1_type -105 84 1 420 333 58 0 chr3 19525112 19525283 -198511875 + MIR SINE MIR 20 200 -62 1734 167 0 35 chr3 19526025 19526336 -198510822 - AluJo SINE Alu -12 300 1 323 307 203 0 chr3 19526593 19526756 -198510402 - L2 LINE L2 0 3313 3118 409 240 78 16 chr3 19527294 19527423 -198509735 - MIR SINE MIR -70 192 56 594 256 107 14 chr3 19527536 19527751 -198509407 + MIR SINE MIR 6 240 -22 507 247 168 16 chr3 19527772 19527962 -198509196 + MIR SINE MIR 1 219 -43 261 335 71 13 chr3 19528236 19528391 -198508767 - MIR SINE MIR -19 243 80 248 324 39 10 chr3 19529521 19529623 -198507535 + MIR3 SINE MIR 87 191 -17 828 65 0 0 chr3 19529644 19529751 -198507407 - L1MA3 LINE L1 0 6305 6199 333 317 38 38 chr3 19529952 19530138 -198507020 - L2 LINE L2 -194 3078 2893 373 274 0 28 chr3 19530676 19530782 -198506376 + MIR3 SINE MIR 91 193 -15 1121 192 0 10 chr3 19531068 19531276 -198505882 - AluJb SINE Alu -20 292 87 1578 109 35 0 chr3 19531337 19531596 -198505562 - AluSx SINE Alu 0 312 55 313 124 4 89 chr3 19531649 19531727 -198505431 - Alu SINE Alu -5 297 238 334 323 105 8 chr3 19531804 19532052 -198505106 - L1MC4a LINE L1 -1907 5901 5630 887 236 16 6 chr3 19532256 19532438 -198504720 - MER58A DNA MER1_type -40 184 1 222 275 87 0 chr3 19533276 19533345 -198503813 - MIR SINE MIR -97 165 91 1073 200 18 11 chr3 19533913 19534260 -198502898 - L1P5 LINE L1 -612 5539 5191 259 298 0 48 chr3 19534861 19534965 -198502193 + MIR SINE MIR 113 211 -51 239 223 0 64 chr3 19535409 19535503 -198501655 + C-rich Low_complexity Low_complexity 2 89 0 183 234 0 0 chr3 19535572 19535649 -198501509 + C-rich Low_complexity Low_complexity 4 80 0 574 207 35 0 chr3 19537424 19537540 -198499618 - L2 LINE L2 -20 3293 3174 220 189 0 0 chr3 19538535 19538572 -198498586 + (TG)n Simple_repeat Simple_repeat 1 37 0 326 288 107 37 chr3 19538639 19538807 -198498351 + MIR SINE MIR 5 184 -67 243 0 0 0 chr3 19539063 19539090 -198498068 + (TG)n Simple_repeat Simple_repeat 2 28 0 306 217 0 0 chr3 19539559 19539619 -198497539 - L2 LINE L2 -1 3271 3212 351 325 83 8 chr3 19539658 19539778 -198497380 + MIR SINE MIR 21 149 -113 266 260 10 70 chr3 19541064 19541164 -198495994 + MIR SINE MIR 168 261 -1 244 310 28 0 chr3 19541319 19541390 -198495768 + MIR3 SINE MIR 109 181 -27 774 255 53 53 chr3 19541399 19541646 -198495512 + MIR SINE MIR 4 250 -12 263 321 80 18 chr3 19542376 19542488 -198494670 + MIR SINE MIR 32 150 -112 206 351 70 9 chr3 19542682 19542796 -198494362 - MIR SINE MIR -55 207 87 203 273 0 0 chr3 19543178 19543222 -198493936 + L2 LINE L2 3251 3294 -19 182 401 29 22 chr3 19544257 19544394 -198492764 + L2 LINE L2 2256 2393 -921 215 125 0 0 chr3 19544583 19544615 -198492543 + L2 LINE L2 3206 3237 -35 502 305 73 0 chr3 19544866 19545017 -198492141 - MIR SINE MIR -22 240 79 482 263 8 49 chr3 19545272 19545464 -198491694 + MIR SINE MIR 2 178 -58 829 168 65 0 chr3 19545465 19545650 -198491508 + L1MC1 LINE L1 6107 6303 -30 292 330 19 0 chr3 19546513 19546619 -198490539 - MIR SINE MIR -63 145 38 571 335 64 4 chr3 19547229 19547480 -198489678 - Charlie8 DNA MER1_type -2141 276 11 211 321 66 29 chr3 19548277 19548414 -198488744 + MIR3 SINE MIR 8 149 -59 583 294 43 13 chr3 19548613 19548844 -198488314 - L2 LINE L2 0 3313 3076 180 318 16 16 chr3 19550335 19550398 -198486760 + L2 LINE L2 1375 1437 -1877 195 344 57 13 chr3 19550425 19550582 -198486576 + L2 LINE L2 1631 1794 -1520 516 281 180 19 chr3 19550583 19551201 -198485957 - L2 LINE L2 -294 3019 2268 1798 146 3 72 chr3 19551914 19552249 -198484909 - AluSx SINE Alu 0 312 1 1438 193 10 30 chr3 19552272 19552444 -198484714 - AluJo SINE Alu -23 289 124 2244 90 0 13 chr3 19552444 19552743 -198484415 + AluY SINE Alu 1 295 -16 1438 193 10 30 chr3 19552743 19552865 -198484293 - AluJo SINE Alu -188 124 1 777 176 8 0 chr3 19552879 19553004 -198484154 - FLAM_C SINE Alu -17 126 1 335 315 52 37 chr3 19553122 19553289 -198483869 + MIR SINE MIR 18 189 -60 191 333 14 14 chr3 19553683 19553752 -198483406 - L3 LINE CR1 -526 1051 983 217 319 90 52 chr3 19554192 19554346 -198482812 + MIR SINE MIR 7 177 -58 632 239 60 50 chr3 19555139 19555357 -198481801 - MIR SINE MIR -3 259 40 510 303 196 38 chr3 19555984 19556301 -198480857 - L3 LINE CR1 -19 1558 1192 496 225 110 6 chr3 19556350 19556523 -198480635 + MER117 DNA MER1_type 7 197 0 356 344 134 16 chr3 19556564 19556750 -198480408 - L3 LINE CR1 -507 1070 863 394 266 77 24 chr3 19556757 19556926 -198480232 - L1ME LINE L1 -322 5799 5622 255 277 0 43 chr3 19557502 19557596 -198479562 - L1ME LINE L1 -563 5558 5469 193 323 30 30 chr3 19557904 19558003 -198479155 - L2 LINE L2 -790 2524 2426 251 380 60 7 chr3 19559240 19559390 -198477768 - MIR3 SINE MIR -32 176 19 351 337 118 17 chr3 19560158 19560346 -198476812 + MIR SINE MIR 9 208 -41 1150 235 104 3 chr3 19560348 19560693 -198476465 - MLT1B LTR MaLR 0 390 11 2396 63 0 3 chr3 19560770 19561069 -198476089 - AluY SINE Alu -13 298 1 515 315 43 30 chr3 19561131 19561366 -198475792 - L2 LINE L2 -4 3309 3072 414 312 112 36 chr3 19563378 19563654 -198473504 - L2 LINE L2 0 3313 3017 267 250 13 40 chr3 19565566 19565642 -198471516 + MIR3 SINE MIR 106 179 -29 577 258 20 7 chr3 19565721 19565888 -198471270 - MIR SINE MIR -58 150 12 2336 91 0 0 chr3 19566157 19566455 -198470703 + AluSx SINE Alu 1 298 -14 625 321 51 4 chr3 19569674 19569911 -198467247 + MIR SINE MIR 15 262 0 251 270 14 0 chr3 19570125 19570199 -198466959 - L1ME LINE L1 -506 5656 5582 377 271 16 16 chr3 19570590 19570712 -198466446 + MIR SINE MIR 21 142 -120 188 369 31 11 chr3 19570850 19571031 -198466127 - MIR SINE MIR -3 259 5 296 367 51 6 chr3 19571380 19571538 -198465620 + L3 LINE CR1 1391 1555 -22 189 366 0 24 chr3 19571872 19571954 -198465204 - MIR SINE MIR -28 234 155 317 305 122 24 chr3 19572311 19572524 -198464634 + L3 LINE CR1 1344 1577 0 411 220 40 0 chr3 19572611 19572711 -198464447 - MLT1K LTR MaLR 0 588 485 724 248 0 0 chr3 19573076 19573209 -198463949 + FLAM_A SINE Alu 1 133 0 271 309 36 18 chr3 19573802 19573912 -198463246 + MIR SINE MIR 28 139 -123 224 208 183 0 chr3 19573904 19574011 -198463147 + L2 LINE L2 2922 3061 -252 * 382 355 113 5 chr3 19574138 19574324 -198462834 - MIR SINE MIR -52 210 5 301 196 18 0 chr3 19574413 19574469 -198462689 + L2 LINE L2 3256 3312 -1 254 286 48 9 chr3 19574497 19574602 -198462556 - MLT1I LTR MaLR -242 167 59 570 225 33 13 chr3 19576063 19576214 -198460944 - Charlie8 DNA MER1_type -2225 192 39 2035 137 3 0 chr3 19577058 19577358 -198459800 - AluSx SINE Alu -11 301 1 808 261 26 13 chr3 19581659 19581885 -198455273 + MIR SINE MIR 10 238 -24 378 268 33 0 chr3 19582463 19582602 -198454556 - MLT1J LTR MaLR -278 186 63 448 291 72 52 chr3 19583267 19583573 -198453585 + MER113 DNA MER1_type? 111 422 -99 189 0 0 0 chr3 19584547 19584568 -198452590 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 1792 136 0 21 chr3 19584568 19584854 -198452304 - AluJb SINE Alu -32 280 1 209 360 35 0 chr3 19584893 19584979 -198452179 + L3 LINE CR1 1160 1248 -329 339 338 20 13 chr3 19585192 19585343 -198451815 - MIR3 SINE MIR -34 174 23 26 0 0 0 chr3 19585543 19585569 -198451589 + AT_rich Low_complexity Low_complexity 1 26 0 3930 195 20 0 chr3 19585605 19586309 -198450849 + L1MC1 LINE L1 5616 6333 0 514 344 100 17 chr3 19586484 19586845 -198450313 - L1MC4a LINE L1 -1910 5898 5508 308 273 148 8 chr3 19587120 19587248 -198449910 - MIR SINE MIR -70 192 47 343 336 28 0 chr3 19587305 19587412 -198449746 + MIR SINE MIR 117 226 -36 248 123 247 27 chr3 19589330 19589403 -198447755 + MIR SINE MIR 46 134 -128 621 291 92 46 chr3 19590108 19590609 -198446549 - MLT1K LTR MaLR -63 525 2 1430 12 0 0 chr3 19590688 19590851 -198446307 - AluYb8 SINE Alu -1 317 155 383 288 169 0 chr3 19590892 19591069 -198446089 + MIR SINE MIR 22 228 -34 229 323 81 0 chr3 19592152 19592276 -198444882 + MIR SINE MIR 36 169 -93 404 283 169 22 chr3 19593131 19593315 -198443843 + Charlie8 DNA MER1_type 1 211 -2206 1095 223 38 0 chr3 19596231 19596442 -198440716 - MER20 DNA MER1_type 0 219 1 309 82 0 0 chr3 19600693 19600742 -198436416 + (T)n Simple_repeat Simple_repeat 1 49 0 195 42 0 0 chr3 19602176 19602200 -198434958 + (CCA)n Simple_repeat Simple_repeat 2 25 0 261 75 0 0 chr3 19602894 19602934 -198434224 + (TA)n Simple_repeat Simple_repeat 1 40 0 296 365 153 6 chr3 19607413 19608093 -198429065 + L2 LINE L2 1901 2680 -634 1445 164 53 4 chr3 19608093 19608356 -198428802 - AluJb SINE Alu -36 276 1 251 288 9 27 chr3 19609039 19609150 -198428008 + MER103 DNA DNA 1 109 -57 1071 163 24 14 chr3 19609935 19610144 -198427014 + AluJb SINE Alu 85 295 -17 215 269 6 50 chr3 19610421 19610603 -198426555 + G-rich Low_complexity Low_complexity 4 177 0 2307 233 19 42 chr3 19611446 19612013 -198425145 + MLT2B3 LTR ERVL 1 554 0 1226 311 118 62 chr3 19612641 19613469 -198423689 + L1M4 LINE L1 2199 3255 -2891 2101 136 0 3 chr3 19613469 19613779 -198423379 + AluSx SINE Alu 1 309 -3 1226 311 118 62 chr3 19613779 19614185 -198422973 + L1M4 LINE L1 3255 3637 -2509 303 174 16 36 chr3 19614591 19614673 -198422485 - AluJ/FLAM SINE Alu -242 60 5 504 343 171 0 chr3 19614673 19614867 -198422291 + L1M4 LINE L1 4210 4369 -1777 1657 182 17 3 chr3 19614867 19615164 -198421994 + AluJo SINE Alu 1 301 -11 504 343 171 0 chr3 19615164 19615278 -198421880 + L1M4 LINE L1 4369 4571 -1575 396 364 48 0 chr3 19615406 19615571 -198421587 + L1M4 LINE L1 4742 4914 -1232 287 239 11 22 chr3 19615979 19616071 -198421087 - LTR41 LTR ERVL -666 107 17 715 229 0 8 chr3 19616589 19616720 -198420438 - FRAM SINE Alu -46 130 1 892 329 38 11 chr3 19616883 19617354 -198419804 - ERVL LTR ERVL -699 5065 4582 313 315 92 15 chr3 19617356 19617486 -198419672 - L1MC4a LINE L1 -1605 6203 6064 22 56 0 0 chr3 19617965 19618001 -198419157 + AT_rich Low_complexity Low_complexity 1 36 0 199 253 46 81 chr3 19618217 19618304 -198418854 + MIR3 SINE MIR 91 174 -34 4029 136 87 48 chr3 19618755 19620017 -198417141 - pTR5 LTR ERV1 -143 2295 741 1000 204 52 126 chr3 19620451 19620693 -198416465 - MLT1B LTR MaLR 0 390 191 2212 94 3 0 chr3 19620693 19620990 -198416168 - AluSx SINE Alu -14 298 1 1000 204 52 126 chr3 19620990 19621168 -198415990 - MLT1B LTR MaLR -199 191 1 827 218 0 0 chr3 19621211 19621353 -198415805 - FRAM SINE Alu -19 157 16 1186 199 53 115 chr3 19621390 19621645 -198415513 + L1MB4 LINE L1 5668 5869 -311 1634 176 49 0 chr3 19621645 19621929 -198415229 + AluJo SINE Alu 1 298 -14 1186 199 53 115 chr3 19621929 19622223 -198414935 + L1MB4 LINE L1 5869 6180 0 2256 109 0 13 chr3 19622457 19622770 -198414388 + AluSx SINE Alu 2 310 -2 330 359 62 0 chr3 19623238 19623366 -198413792 - MER5B DNA MER1_type -40 138 3 3295 98 35 8 chr3 19623569 19624049 -198413109 + LTR15 LTR ERV1 1 493 0 360 0 0 0 chr3 19624916 19624956 -198412202 + (CA)n Simple_repeat Simple_repeat 2 41 0 180 297 27 14 chr3 19625238 19625312 -198411846 - L2 LINE L2 -333 2980 2906 254 273 91 9 chr3 19627128 19627238 -198409920 - L2 LINE L2 -171 3142 3024 231 287 35 11 chr3 19627553 19627640 -198409518 - L3 LINE CR1 -355 1222 1134 180 317 58 48 chr3 19627774 19627878 -198409280 + MIR3 SINE MIR 97 201 -7 229 279 29 0 chr3 19628857 19628925 -198408233 - L2 LINE L2 -2 3311 3242 673 257 36 28 chr3 19631003 19631252 -198405906 - L1MA7 LINE L1 -146 6145 5895 578 216 18 0 chr3 19631252 19631363 -198405795 + L1MA7 LINE L1 6173 6285 -6 6184 103 66 10 chr3 19633995 19634898 -198402260 - LTR13 LTR ERVK 0 954 1 289 286 171 6 chr3 19635184 19635359 -198401799 - L2 LINE L2 -171 3142 2939 199 322 35 11 chr3 19635524 19635611 -198401547 - L3 LINE CR1 -355 1222 1134 2482 55 3 0 chr3 19635977 19636285 -198400873 - AluY SINE Alu -2 309 1 1042 192 138 100 chr3 19637183 19637637 -198399521 - LTR10B LTR ERV1 -5 542 63 2433 42 0 0 chr3 19637637 19637944 -198399214 - AluY SINE Alu 0 307 1 1042 192 138 100 chr3 19637944 19638010 -198399148 - LTR10B LTR ERV1 -484 63 1 216 306 0 47 chr3 19638200 19638285 -198398873 + MIR SINE MIR 65 145 -117 2285 95 0 0 chr3 19639411 19639716 -198397442 - AluY SINE Alu -6 305 1 261 0 0 0 chr3 19646569 19646598 -198390560 + (A)n Simple_repeat Simple_repeat 1 29 0 766 203 0 0 chr3 19646611 19646739 -198390419 + FLAM_C SINE Alu 2 129 -14 459 310 58 0 chr3 19647352 19647507 -198389651 + MIR SINE MIR 21 184 -78 250 238 16 16 chr3 19647902 19647965 -198389193 + MIR SINE MIR 200 262 0 307 293 73 14 chr3 19648430 19648594 -198388564 + MIR SINE MIR 29 207 -55 2340 69 10 3 chr3 19649518 19649824 -198387334 - AluSp SINE Alu -5 308 1 194 286 0 18 chr3 19650175 19650231 -198386927 - L2 LINE L2 -8 3264 3210 438 320 67 22 chr3 19650345 19650501 -198386657 + L1ME4a LINE L1 5567 5737 -384 2257 113 0 3 chr3 19650501 19650812 -198386346 + AluSq SINE Alu 1 310 -3 438 320 67 22 chr3 19650812 19650880 -198386278 + L1ME4a LINE L1 5737 5801 -320 317 182 15 0 chr3 19650941 19651010 -198386148 - L1MD1 LINE L1 -40 8002 6116 283 280 0 40 chr3 19651638 19651738 -198385420 - MIR SINE MIR -132 130 35 7071 52 16 9 chr3 19652160 19653688 -198383470 + SVA Other Other 5 1386 0 279 0 0 0 chr3 19653697 19653728 -198383430 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 362 316 43 32 chr3 19653957 19654112 -198383046 + L1ME4a LINE L1 5933 6092 -29 2200 107 3 0 chr3 19654112 19654412 -198382746 - AluSp SINE Alu -12 301 1 362 316 43 32 chr3 19654412 19654443 -198382715 + L1ME4a LINE L1 6092 6121 0 246 267 0 0 chr3 19654591 19654666 -198382492 + L1ME4a LINE L1 6046 6120 -1 583 277 93 6 chr3 19654919 19655153 -198382005 - MIR SINE MIR -3 259 4 2400 132 22 0 chr3 19655216 19655572 -198381586 - THE1B LTR MaLR 0 364 1 9249 98 42 44 chr3 19655572 19657059 -198380099 - THE1B-int LTR MaLR 0 1580 97 456 61 15 0 chr3 19657059 19657125 -198380033 - THE1B-int LTR MaLR -1427 153 87 1729 161 99 28 chr3 19657125 19657695 -198379463 + MER51B LTR ERV1 1 376 -1 550 96 24 0 chr3 19657695 19657778 -198379380 - THE1B-int LTR MaLR -1495 85 1 2233 144 28 3 chr3 19657778 19658133 -198379025 - THE1B LTR MaLR 0 364 1 1051 223 8 12 chr3 19658652 19658903 -198378255 - AluJo SINE Alu -52 260 11 745 204 0 0 chr3 19658914 19659046 -198378112 - FLAM_C SINE Alu -1 132 1 892 246 234 8 chr3 19659348 19659436 -198377722 - L1P4 LINE L1 -458 5716 5649 2054 121 0 3 chr3 19659436 19659733 -198377425 - AluSq SINE Alu -17 296 1 892 246 234 8 chr3 19659733 19659999 -198377159 - L1P4 LINE L1 -525 5649 5294 1757 180 0 0 chr3 19660002 19660296 -198376862 - AluJo SINE Alu -18 294 1 543 175 0 35 chr3 19660364 19660478 -198376680 + AluJb SINE Alu 203 312 0 845 147 0 0 chr3 19660492 19660621 -198376537 + FLAM_A SINE Alu 8 136 -6 226 324 14 0 chr3 19660668 19660742 -198376416 + MIR SINE MIR 110 184 -78 190 220 77 5 chr3 19662021 19662130 -198375028 - MIR SINE MIR -14 248 86 1541 148 139 3 chr3 19663718 19664021 -198373137 - MER4E LTR ERV1 -8 758 415 288 194 0 45 chr3 19664025 19664092 -198373066 - MER4D LTR ERV1 -808 64 1 1830 169 3 0 chr3 19664298 19664600 -198372558 - AluSx SINE Alu -9 303 1 766 206 24 35 chr3 19664603 19664773 -198372385 - FAM SINE Alu -7 168 1 256 309 74 0 chr3 19666221 19666302 -198370856 + MIR SINE MIR 111 197 -65 1309 158 65 15 chr3 19667307 19667567 -198369591 - AluJb SINE Alu -21 291 19 552 126 58 39 chr3 19667780 19667883 -198369275 - AluSg/x SINE Alu -15 294 190 354 217 178 38 chr3 19669603 19669760 -198367398 + MIR SINE MIR 13 191 -71 662 227 117 0 chr3 19669762 19669925 -198367233 - MER46C DNA MER2_type 0 338 157 516 161 11 0 chr3 19669937 19670024 -198367134 + MER2 DNA MER2_type 1 88 -257 365 250 155 0 chr3 19670040 19670156 -198367002 - MER46C DNA MER2_type -199 139 6 210 313 0 30 chr3 19670615 19670682 -198366476 - L2 LINE L2 0 3313 3249 492 253 131 15 chr3 19670883 19671083 -198366075 + MIR SINE MIR 28 251 -11 390 283 71 47 chr3 19671542 19671754 -198365404 - Charlie8 DNA MER1_type -2180 237 21 274 234 0 0 chr3 19672745 19672809 -198364349 + L1ME4a LINE L1 5683 5746 -2062 259 281 74 25 chr3 19673081 19673202 -198363956 + L1ME4a LINE L1 5979 6105 -16 2200 106 0 13 chr3 19673278 19673590 -198363568 + AluSx SINE Alu 1 308 -4 1693 175 65 19 chr3 19673595 19674083 -198363075 + L1MB3 LINE L1 5577 6143 -40 2220 98 0 13 chr3 19674083 19674388 -198362770 + AluSx SINE Alu 1 301 -11 1129 137 17 0 chr3 19674726 19674901 -198362257 - AluJb SINE Alu -14 298 121 489 277 9 95 chr3 19675491 19675594 -198361564 - MIR SINE MIR -13 249 175 2222 98 0 10 chr3 19675594 19675899 -198361259 + AluSc SINE Alu 1 302 -7 489 277 9 95 chr3 19675899 19676026 -198361132 - MIR SINE MIR -87 175 39 1670 121 68 8 chr3 19676035 19676300 -198360858 + AluJb SINE Alu 23 303 -9 277 254 0 0 chr3 19676484 19676539 -198360619 - Tigger5 DNA MER2_type 0 2323 2269 286 172 250 0 chr3 19676574 19676638 -198360520 - Tigger5 DNA MER2_type -2243 80 1 609 287 39 17 chr3 19676771 19677001 -198360157 - MIR SINE MIR -7 255 21 352 241 200 14 chr3 19677429 19677574 -198359584 + MIR SINE MIR 19 190 -72 259 288 0 12 chr3 19677620 19677700 -198359458 + MIR SINE MIR 184 262 0 216 259 17 0 chr3 19677698 19677756 -198359402 - MIR SINE MIR -124 138 80 * 2195 109 3 0 chr3 19677792 19678096 -198359062 - AluSx SINE Alu -5 307 3 1571 184 139 17 chr3 19678106 19678459 -198358699 + MSTD LTR MaLR 1 396 0 754 0 0 0 chr3 19678481 19678566 -198358592 - L1PA6 LINE L1 -6 6148 6064 929 120 0 8 chr3 19678576 19678701 -198358457 - FLAM_C SINE Alu -9 124 1 3361 194 75 93 chr3 19678703 19678812 -198358346 + L1MC4 LINE L1 6118 6227 -1815 1730 115 30 54 chr3 19678812 19678973 -198358185 - AluSx SINE Alu -19 293 141 2489 43 0 7 chr3 19678973 19679278 -198357880 - AluY SINE Alu -8 303 1 1730 115 30 54 chr3 19679278 19679412 -198357746 - AluSx SINE Alu -171 141 5 3361 194 75 93 chr3 19679412 19680143 -198357015 + L1MC4 LINE L1 6227 6933 -1109 1602 167 14 21 chr3 19680143 19680431 -198356727 + AluJb SINE Alu 15 300 -12 3361 194 75 93 chr3 19680431 19680933 -198356225 + L1MC4 LINE L1 6933 7442 -600 213 284 14 27 chr3 19680974 19681048 -198356110 + MIR SINE MIR 175 247 -15 1102 166 0 0 chr3 19681308 19681477 -198355681 - AluSq SINE Alu -11 302 134 2308 87 0 0 chr3 19681477 19681776 -198355382 - AluSx SINE Alu -13 299 1 338 252 195 8 chr3 19681780 19681903 -198355255 - MIR SINE MIR -115 147 2 291 271 25 66 chr3 19682253 19682430 -198354728 - MIR SINE MIR -63 145 10 253 261 38 0 chr3 19683006 19683101 -198354057 - MIR SINE MIR -31 177 80 902 146 0 7 chr3 19684442 19684586 -198352572 - FLAM_C SINE Alu 0 143 1 231 270 157 11 chr3 19687020 19687109 -198350049 - MIR SINE MIR -80 182 81 480 333 25 0 chr3 19687742 19687901 -198349257 - MIR SINE MIR -14 248 86 367 342 50 6 chr3 19688242 19688403 -198348755 - MIR SINE MIR -70 192 25 351 288 79 7 chr3 19688993 19689132 -198348026 + MIR SINE MIR 35 183 -79 436 274 32 14 chr3 19689864 19690040 -198347118 + MIR SINE MIR 38 219 -43 2610 17 0 0 chr3 19690043 19690337 -198346821 + AluYb8 SINE Alu 20 313 -5 1173 137 0 0 chr3 19690337 19690512 -198346646 + AluSg/x SINE Alu 132 306 -4 2143 108 9 22 chr3 19690519 19690835 -198346323 + AluSx SINE Alu 1 312 0 2115 97 0 39 chr3 19690846 19691156 -198346002 + AluSg SINE Alu 1 298 -12 950 277 183 44 chr3 19691281 19691740 -198345418 + MER115 DNA AcHobo 3 525 -168 556 242 199 5 chr3 19691755 19691941 -198345217 + L1ME1 LINE L1 5928 6149 -17 322 271 52 0 chr3 19691954 19692050 -198345108 + MER115 DNA AcHobo 513 613 -80 180 326 53 0 chr3 19692993 19693088 -198344070 + L2 LINE L2 2658 2757 -557 284 224 106 64 chr3 19693337 19693436 -198343722 - L2 LINE L2 -24 3248 3146 261 294 104 50 chr3 19693432 19693653 -198343505 + L2 LINE L2 2313 2545 -769 * 197 325 86 57 chr3 19693784 19694190 -198342968 + L2 LINE L2 2830 3247 -25 355 237 15 74 chr3 19694789 19694924 -198342234 + MLT1J LTR MaLR 99 225 -286 335 257 35 44 chr3 19695084 19695197 -198341961 + MIR SINE MIR 25 136 -126 978 152 11 42 chr3 19695673 19695864 -198341294 - MER5A DNA MER1_type -4 185 1 428 247 173 56 chr3 19695875 19696037 -198341121 + MER5A DNA MER1_type 4 184 -5 632 219 71 47 chr3 19696056 19696225 -198340933 - MER5B DNA MER1_type -5 173 1 253 272 82 89 chr3 19696234 19696392 -198340766 + MER5B DNA MER1_type 2 158 -20 199 191 40 143 chr3 19696375 19696396 -198340762 + L2 LINE L2 681 703 -2611 * 1481 175 90 0 chr3 19696396 19696664 -198340494 - AluJo SINE Alu -6 306 15 199 191 40 143 chr3 19696664 19696768 -198340390 + L2 LINE L2 703 793 -2521 1720 254 112 35 chr3 19696781 19697140 -198340018 + MER20B DNA MER1_type 40 370 -413 2349 123 0 0 chr3 19697140 19697450 -198339708 + AluSx SINE Alu 1 310 -2 1720 254 112 35 chr3 19697450 19697778 -198339380 + MER20B DNA MER1_type 370 780 -3 264 234 62 0 chr3 19697987 19698051 -198339107 + MER5B DNA MER1_type 111 178 0 2245 99 0 32 chr3 19698243 19698556 -198338602 - AluSq SINE Alu -10 303 1 1468 221 115 17 chr3 19698560 19698968 -198338190 + LTR16C LTR ERVL 41 488 -3 259 196 0 0 chr3 19699308 19699354 -198337804 - LTR16C LTR ERVL -11 480 435 1593 116 81 149 chr3 19699355 19699436 -198337722 + Tigger3(Golem) DNA MER2_type 1 86 -2942 2133 112 0 10 chr3 19699436 19699739 -198337419 + AluY SINE Alu 1 300 -11 1593 116 81 149 chr3 19699739 19700027 -198337131 + Tigger3(Golem) DNA MER2_type 86 3025 -3 506 227 36 0 chr3 19700164 19700274 -198336884 + MIR SINE MIR 60 173 -89 2341 78 3 0 chr3 19700377 19700681 -198336477 - AluY SINE Alu 0 305 1 426 333 79 11 chr3 19700814 19700991 -198336167 - MER5A DNA MER1_type 0 189 1 342 231 120 0 chr3 19701273 19701381 -198335777 + Charlie8 DNA MER1_type 1 121 -2296 2262 121 0 3 chr3 19701390 19701695 -198335463 + AluSx SINE Alu 1 304 -8 2159 123 6 19 chr3 19701717 19702033 -198335125 + AluSx SINE Alu 1 312 0 990 270 175 11 chr3 19702033 19702388 -198334770 - MER45C DNA AcHobo -93 860 448 880 223 67 57 chr3 19702520 19702803 -198334355 - MER45C DNA AcHobo -667 286 1 2347 103 0 7 chr3 19702830 19703132 -198334026 - AluSx SINE Alu -12 300 1 244 291 82 55 chr3 19703189 19703299 -198333859 - MIR SINE MIR -97 165 53 868 138 36 7 chr3 19703322 19703460 -198333698 + AluJb SINE Alu 121 262 -50 272 27 27 0 chr3 19703461 19703498 -198333660 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 1132 83 0 0 chr3 19703498 19703631 -198333527 + AluY SINE Alu 1 133 -178 2601 52 0 10 chr3 19703648 19703955 -198333203 + AluY SINE Alu 1 304 -7 266 194 97 65 chr3 19703991 19704012 -198333146 + MIR SINE MIR 131 150 -112 2134 106 25 0 chr3 19704012 19704323 -198332835 + AluSp SINE Alu 1 313 0 266 194 97 65 chr3 19704323 19704394 -198332764 + MIR SINE MIR 150 226 -36 * 683 286 44 16 chr3 19704387 19704635 -198332523 + MIR SINE MIR 8 262 0 2752 17 0 0 chr3 19704838 19705136 -198332022 + AluY SINE Alu 11 308 -3 1402 180 75 0 chr3 19705195 19705500 -198331658 - L1MB5 LINE L1 0 6174 5847 1111 172 72 0 chr3 19705756 19705965 -198331193 - L1MB5 LINE L1 -397 5786 5563 22 35 0 0 chr3 19706361 19706390 -198330768 + AT_rich Low_complexity Low_complexity 1 29 0 1879 128 40 47 chr3 19706395 19706691 -198330467 + AluSx SINE Alu 3 296 -16 2153 92 50 0 chr3 19706693 19706974 -198330184 + AluSg SINE Alu 1 295 -15 849 292 48 15 chr3 19706977 19707309 -198329849 + L1ME LINE L1 5398 5740 -381 1743 182 3 20 chr3 19707411 19707708 -198329450 + AluJo SINE Alu 1 292 -20 394 296 0 0 chr3 19707708 19707796 -198329362 - L1MC4 LINE L1 -1340 6702 6615 * 396 324 9 0 chr3 19707781 19707892 -198329266 + L1MC4 LINE L1 6614 6725 -1317 1402 221 61 0 chr3 19708183 19708477 -198328681 - AluJb SINE Alu 0 312 1 1458 228 14 0 chr3 19708580 19708861 -198328297 + AluJo SINE Alu 3 287 -25 640 130 11 0 chr3 19708943 19709035 -198328123 + AluJb SINE Alu 34 126 -186 1968 172 0 3 chr3 19709036 19709344 -198327814 + AluSg SINE Alu 1 307 -3 706 214 8 8 chr3 19709346 19709477 -198327681 - MER5A DNA MER1_type -56 133 3 2469 80 0 0 chr3 19709627 19709927 -198327231 - AluY SINE Alu -11 300 1 250 315 14 0 chr3 19709996 19710069 -198327089 - L1ME LINE L1 -476 5645 5572 1826 129 96 7 chr3 19710081 19710352 -198326806 - AluSq SINE Alu -18 295 1 238 289 145 0 chr3 19710419 19710495 -198326663 - L2 LINE L2 0 3272 3186 221 167 0 0 chr3 19710493 19710529 -198326629 - MIR SINE MIR -83 179 144 * 61 37 0 0 chr3 19710531 19710613 -198326545 + AT_rich Low_complexity Low_complexity 1 82 0 292 195 12 69 chr3 19710614 19710652 -198326506 - MIR SINE MIR -64 144 120 2053 143 0 7 chr3 19710652 19710952 -198326206 + AluSx SINE Alu 1 298 -14 292 195 12 69 chr3 19710952 19710993 -198326165 - MIR SINE MIR -88 120 78 2279 116 7 7 chr3 19711243 19711553 -198325605 - AluJo SINE Alu -1 311 2 200 268 29 0 chr3 19711800 19711875 -198325283 + MIR SINE MIR 106 143 -65 1349 279 45 20 chr3 19711875 19712002 -198325156 + HERV16 LTR ERVL 2323 2445 -2551 2186 128 48 31 chr3 19712002 19712360 -198324798 + THE1B LTR MaLR 1 364 0 1349 279 45 20 chr3 19712360 19712672 -198324486 + HERV16 LTR ERVL 2445 2773 -2223 2519 74 0 7 chr3 19712711 19713021 -198324137 + AluY SINE Alu 1 308 -3 1681 135 45 28 chr3 19713025 19713313 -198323845 + L1PA16 LINE L1 5869 6161 -5 2237 83 9 74 chr3 19713488 19713814 -198323344 + AluSq SINE Alu 2 306 -7 23 33 0 0 chr3 19713843 19713873 -198323285 + AT_rich Low_complexity Low_complexity 1 30 0 1129 152 0 0 chr3 19714146 19714311 -198322847 - AluJb SINE Alu -16 296 132 268 193 239 0 chr3 19714321 19714409 -198322749 + L1ME3 LINE L1 6052 6160 -2 1936 117 30 0 chr3 19714420 19714686 -198322472 + AluSx SINE Alu 1 274 -38 189 74 0 0 chr3 19714698 19714725 -198322433 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 608 308 72 21 chr3 19714824 19715103 -198322055 - L2 LINE L2 -829 2485 2193 1259 247 29 50 chr3 19715103 19715166 -198321992 + L1ME3 LINE L1 5472 5535 -627 1972 160 13 0 chr3 19715166 19715472 -198321686 - AluJb SINE Alu -2 310 1 1259 247 29 50 chr3 19715472 19715656 -198321502 + L1ME3 LINE L1 5535 5721 -441 2203 130 0 0 chr3 19715656 19715957 -198321201 + AluSq SINE Alu 1 301 -12 1259 247 29 50 chr3 19715957 19716206 -198320952 + L1ME3 LINE L1 5721 5945 -217 835 128 35 35 chr3 19716206 19716347 -198320811 + AluJo SINE Alu 6 146 -166 2355 95 0 0 chr3 19716347 19716641 -198320517 + AluSx SINE Alu 1 294 -18 1918 192 55 101 chr3 19716641 19717236 -198319922 - L1MC4a LINE L1 -180 7628 7068 2050 177 0 0 chr3 19717236 19717546 -198319612 - AluJb SINE Alu -2 310 1 1918 192 55 101 chr3 19717546 19717642 -198319516 - L1MC4a LINE L1 -740 7068 6969 862 137 0 30 chr3 19717644 19717775 -198319383 + AluJb SINE Alu 1 127 -185 441 0 0 0 chr3 19719170 19719219 -198317939 + (TAA)n Simple_repeat Simple_repeat 3 51 0 5582 170 38 142 chr3 19719241 19719769 -198317389 - L1MC4a LINE L1 -831 6977 6396 2265 110 3 0 chr3 19719769 19720068 -198317090 - AluSx SINE Alu -12 300 1 5582 170 38 142 chr3 19720068 19720882 -198316276 - L1MC4a LINE L1 -1412 6396 5702 889 198 64 0 chr3 19720882 19721054 -198316104 - AluJb SINE Alu -12 300 118 5582 170 38 142 chr3 19721054 19721453 -198315705 - L1MC4a LINE L1 -2106 5702 5263 * 6199 144 96 76 chr3 19721426 19721660 -198315498 - L1MC3 LINE L1 0 7785 7557 2412 95 0 9 chr3 19721660 19721975 -198315183 - AluSx SINE Alu 0 312 1 6199 144 96 76 chr3 19721975 19722053 -198315105 - L1MC3 LINE L1 -228 7557 7482 2289 113 24 34 chr3 19722053 19722432 -198314726 - THE1C LTR MaLR 0 375 1 6199 144 96 76 chr3 19722432 19722727 -198314431 - L1MC3 LINE L1 -303 7482 7194 335 286 0 0 chr3 19722727 19722818 -198314340 - MLT1F1 LTR MaLR -442 125 35 6199 144 96 76 chr3 19722818 19723042 -198314116 - L1MC3 LINE L1 -591 7194 6976 423 0 0 0 chr3 19723042 19723089 -198314069 + (TG)n Simple_repeat Simple_repeat 2 48 0 6199 144 96 76 chr3 19723089 19723645 -198313513 - L1MC3 LINE L1 -809 6976 6276 1142 201 137 90 chr3 19723645 19724112 -198313046 + MER41B LTR ERV1 113 601 -34 2122 190 11 25 chr3 19724144 19724587 -198312571 - L1MC3 LINE L1 -1504 6281 5845 2275 82 0 3 chr3 19724588 19724880 -198312278 + AluY SINE Alu 1 291 -20 2198 120 10 0 chr3 19724917 19725218 -198311940 + AluSq SINE Alu 1 304 -9 249 33 0 0 chr3 19725218 19725248 -198311910 + (GGGGA)n Simple_repeat Simple_repeat 1 30 0 2761 137 169 20 chr3 19725248 19725803 -198311355 + MER67B LTR ERV1 2 639 -22 2614 162 39 25 chr3 19725847 19726268 -198310890 - L1MC3 LINE L1 -743 5403 5396 2318 86 20 0 chr3 19726268 19726560 -198310598 + AluSx SINE Alu 1 298 -14 2614 162 39 25 chr3 19726560 19726823 -198310335 - L1MC3 LINE L1 -750 5396 5138 2190 108 0 3 chr3 19726825 19727120 -198310038 + AluSc SINE Alu 1 294 -15 273 146 0 0 chr3 19727120 19727161 -198309997 - AluJo/FLAM SINE Alu -180 122 82 1141 197 5 23 chr3 19727163 19727381 -198309777 - AluJo SINE Alu -98 214 1 328 307 49 40 chr3 19727499 19727666 -198309492 + MIR SINE MIR 18 189 -60 1062 184 10 15 chr3 19729143 19729349 -198307809 + AluSg/x SINE Alu 96 300 -10 2517 67 0 0 chr3 19729351 19729648 -198307510 + AluY SINE Alu 1 297 -14 996 168 15 30 chr3 19729714 19729917 -198307241 + MER3 DNA MER1_type 10 209 0 534 287 97 51 chr3 19729940 19730232 -198306926 - L2 LINE L2 -70 3243 2933 2547 53 3 3 chr3 19730232 19730534 -198306624 + AluY SINE Alu 1 302 -9 534 287 97 51 chr3 19730534 19730572 -198306586 - L2 LINE L2 -380 2933 2898 2226 111 0 3 chr3 19730584 19730882 -198306276 + AluSc SINE Alu 1 297 -12 776 272 183 44 chr3 19731007 19731466 -198305692 + MER115 DNA AcHobo 3 525 -168 527 237 199 5 chr3 19731481 19731667 -198305491 + L1ME1 LINE L1 5928 6149 -17 312 271 52 0 chr3 19731680 19731776 -198305382 + MER115 DNA AcHobo 513 613 -80 284 223 106 64 chr3 19733068 19733162 -198303996 - L2 LINE L2 -29 3243 3146 236 290 104 50 chr3 19733158 19733379 -198303779 + L2 LINE L2 2313 2545 -769 * 197 325 86 57 chr3 19733510 19733916 -198303242 + L2 LINE L2 2830 3247 -25 355 237 15 74 chr3 19734515 19734650 -198302508 + MLT1J LTR MaLR 99 225 -286 335 257 35 44 chr3 19734810 19734923 -198302235 + MIR SINE MIR 25 136 -126 978 152 11 42 chr3 19735399 19735590 -198301568 - MER5A DNA MER1_type -4 185 1 428 247 173 56 chr3 19735601 19735763 -198301395 + MER5A DNA MER1_type 4 184 -5 632 219 71 47 chr3 19735782 19735951 -198301207 - MER5B DNA MER1_type -5 173 1 253 272 82 89 chr3 19735960 19736118 -198301040 + MER5B DNA MER1_type 2 158 -20 199 191 40 143 chr3 19736101 19736122 -198301036 + L2 LINE L2 681 703 -2611 * 1481 175 90 0 chr3 19736122 19736390 -198300768 - AluJo SINE Alu -6 306 15 199 191 40 143 chr3 19736390 19736494 -198300664 + L2 LINE L2 703 793 -2521 1720 254 112 35 chr3 19736507 19736866 -198300292 + MER20B DNA MER1_type 40 370 -413 2349 123 0 0 chr3 19736866 19737176 -198299982 + AluSx SINE Alu 1 310 -2 1720 254 112 35 chr3 19737176 19737504 -198299654 + MER20B DNA MER1_type 370 780 -3 264 234 62 0 chr3 19737713 19737777 -198299381 + MER5B DNA MER1_type 111 178 0 2055 125 0 32 chr3 19737969 19738282 -198298876 - AluSq SINE Alu -10 303 1 1478 221 115 17 chr3 19738286 19738694 -198298464 + LTR16C LTR ERVL 41 488 -3 259 196 0 0 chr3 19739034 19739080 -198298078 - LTR16C LTR ERVL -11 480 435 1593 116 81 149 chr3 19739081 19739162 -198297996 + Tigger3(Golem) DNA MER2_type 1 86 -2942 2561 56 0 10 chr3 19739162 19739465 -198297693 + AluY SINE Alu 1 300 -11 1593 116 81 149 chr3 19739465 19739753 -198297405 + Tigger3(Golem) DNA MER2_type 86 3025 -3 506 227 36 0 chr3 19739890 19740000 -198297158 + MIR SINE MIR 60 173 -89 2439 67 0 0 chr3 19740103 19740408 -198296750 - AluY SINE Alu 0 305 1 876 203 68 0 chr3 19740541 19740718 -198296440 - MER5A DNA MER1_type 0 189 1 585 227 147 90 chr3 19740999 19741116 -198296042 + MER102a DNA MER1_type 1 110 -1307 2321 116 0 0 chr3 19741116 19741419 -198295739 + AluSx SINE Alu 1 303 -9 585 227 147 90 chr3 19741419 19741431 -198295727 + MER102a DNA MER1_type 110 120 -1297 2145 128 20 0 chr3 19741431 19741737 -198295421 + AluSx SINE Alu 1 312 0 585 227 147 90 chr3 19741737 19741906 -198295252 + MER102a DNA MER1_type 120 317 -13 183 294 31 150 chr3 19742505 19742798 -198294360 + L2 LINE L2 2966 3223 -49 391 374 5 15 chr3 19743031 19743226 -198293932 + MIR SINE MIR 5 197 -65 216 279 0 16 chr3 19743660 19743721 -198293437 + L3b LINE CR1 1453 1512 -71 312 279 161 7 chr3 19743783 19743980 -198293178 + MIR SINE MIR 23 247 -15 216 323 149 29 chr3 19743963 19744239 -198292919 - L2 LINE L2 -11 3261 2953 * 720 269 11 34 chr3 19744270 19744490 -198292668 - MIR SINE MIR -12 250 33 383 238 51 75 chr3 19744617 19744786 -198292372 + MIR SINE MIR 19 183 -25 368 212 61 68 chr3 19744797 19744929 -198292229 + MIR3 SINE MIR 76 206 -2 2347 91 30 0 chr3 19746284 19746582 -198290576 + AluSx SINE Alu 1 307 -5 2236 129 0 10 chr3 19747077 19747388 -198289770 + AluSx SINE Alu 1 308 -4 238 253 115 0 chr3 19748315 19748402 -198288756 - HAL1 LINE L1 -1047 1460 1364 2250 97 0 52 chr3 19748747 19749076 -198288082 + AluSx SINE Alu 1 312 0 698 254 23 9 chr3 19749580 19749797 -198287361 - L1MC5 LINE L1 -36 7925 7706 392 167 0 33 chr3 19750801 19750891 -198286267 - AluJ/FRAM SINE Alu 0 302 216 198 297 68 0 chr3 19751321 19751395 -198285763 + L2 LINE L2 3160 3238 -34 349 317 62 21 chr3 19751571 19751716 -198285442 - MIR SINE MIR -22 240 90 2363 72 0 13 chr3 19751722 19752027 -198285131 - AluY SINE Alu -10 301 1 2157 208 32 11 chr3 19752027 19752551 -198284607 - L1MB3 LINE L1 -41 6142 5608 978 89 37 113 chr3 19753227 19753553 -198283605 - AluSx SINE Alu -1 301 1 1413 105 18 5 chr3 19753555 19753774 -198283384 - L1P5 LINE L1 -467 5687 5466 225 274 27 0 chr3 19753774 19753847 -198283311 + MIR SINE MIR 91 165 -97 194 266 147 0 chr3 19754823 19754932 -198282226 - MIR SINE MIR -83 179 55 286 327 92 33 chr3 19755879 19756032 -198281126 + L3 LINE CR1 1407 1568 -9 271 308 0 0 chr3 19757741 19757832 -198279326 + MIR SINE MIR 80 170 -92 310 266 101 69 chr3 19758198 19758386 -198278772 - MLT1J LTR MaLR -295 216 23 2266 92 0 3 chr3 19758805 19759099 -198278059 + AluSg SINE Alu 1 293 -17 277 146 0 0 chr3 19759099 19759140 -198278018 - AluJo/FLAM SINE Alu -180 122 82 1153 197 5 23 chr3 19759142 19759360 -198277798 - AluJo SINE Alu -98 214 1 300 311 51 37 chr3 19759489 19759645 -198277513 + MIR SINE MIR 30 189 -60 283 193 0 36 chr3 19760149 19760232 -198276926 + L1PB3 LINE L1 6069 6148 -6 183 211 96 0 chr3 19760330 19760382 -198276776 - MIR SINE MIR -88 174 118 2054 119 20 14 chr3 19760558 19760852 -198276306 - AluSx SINE Alu -16 296 1 310 189 40 0 chr3 19760852 19760926 -198276232 - L1M4 LINE L1 -1228 4918 4842 1705 168 3 18 chr3 19761373 19761678 -198275480 + AluJb SINE Alu 4 304 0 213 333 0 53 chr3 19762130 19762244 -198274914 + L2 LINE L2 3126 3233 -39 284 287 139 8 chr3 19762248 19762370 -198274788 - MIR SINE MIR -60 202 65 418 143 71 10 chr3 19762764 19762862 -198274296 - L1MA1 LINE L1 -417 5885 5782 366 228 89 0 chr3 19762862 19762941 -198274217 - L1MC4 LINE L1 -1344 6698 6613 309 212 45 0 chr3 19762905 19762971 -198274187 + L1MCa LINE L1 1996 2064 -4362 * 237 81 0 0 chr3 19762977 19763014 -198274144 - L1MA1 LINE L1 -508 5789 5753 597 316 55 51 chr3 19763038 19763117 -198274041 - L1ME3A LINE L1 -206 5964 5887 2563 153 43 6 chr3 19763117 19763608 -198273550 - L1MB3 LINE L1 -3 6180 5672 597 316 55 51 chr3 19763608 19764018 -198273140 - L1ME3A LINE L1 -283 5887 5473 584 228 82 19 chr3 19764719 19764877 -198272281 - MIR SINE MIR -11 251 84 1046 264 140 42 chr3 19764978 19765520 -198271638 - MLT1G1 LTR MaLR 0 595 1 181 317 0 61 chr3 19766562 19766644 -198270514 - L2 LINE L2 -2901 413 337 1833 171 96 10 chr3 19767039 19767424 -198269734 + MSTA LTR MaLR 11 428 0 2378 87 10 0 chr3 19767443 19767743 -198269415 - AluSx SINE Alu -9 303 1 380 224 21 18 chr3 19767744 19767902 -198269256 - L1ME LINE L1 -343 5821 5666 464 305 72 15 chr3 19767939 19768359 -198268799 - L1ME LINE L1 -673 5497 5056 914 219 108 8 chr3 19770721 19770981 -198266177 + L1M4 LINE L1 3840 4125 -2021 963 126 0 0 chr3 19770984 19771127 -198266031 - AluSg/x SINE Alu -3 307 165 863 245 93 41 chr3 19771131 19771572 -198265586 + L1M4 LINE L1 4130 4593 -1553 1984 167 11 30 chr3 19771578 19771944 -198265214 + MLT1A1 LTR MaLR 7 365 0 475 284 9 27 chr3 19772382 19772604 -198264554 + L1 LINE L1 3946 4163 -1983 328 319 81 29 chr3 19772820 19773093 -198264065 - L2 LINE L2 -194 3119 2833 305 243 27 0 chr3 19773112 19773186 -198263972 - MIR SINE MIR -108 154 79 349 253 0 11 chr3 19773612 19773703 -198263455 + L1MEd LINE L1 960 1049 -5070 848 252 156 3 chr3 19774520 19774822 -198262336 + MLT1F1 LTR MaLR 103 450 -117 1628 214 74 5 chr3 19775359 19775766 -198261392 + L1MB7 LINE L1 5741 6175 -9 32 67 0 0 chr3 19776176 19776236 -198260922 + AT_rich Low_complexity Low_complexity 1 60 0 183 139 0 0 chr3 19776454 19776490 -198260668 + (TATATG)n Simple_repeat Simple_repeat 3 38 0 401 273 24 8 chr3 19776495 19776621 -198260537 - L1MC4 LINE L1 -1339 6703 6614 399 314 0 19 chr3 19776529 19776634 -198260524 + L1MC4 LINE L1 6614 6716 -1326 * 325 277 87 95 chr3 19776906 19777159 -198259999 - L1 LINE L1 -2814 4034 1655 225 0 0 0 chr3 19777770 19777795 -198259363 + (TA)n Simple_repeat Simple_repeat 2 26 0 1115 203 4 35 chr3 19777795 19778027 -198259131 - AluJo SINE Alu -17 295 71 564 278 137 43 chr3 19781069 19781508 -198255650 - MLT1J LTR MaLR -9 502 23 2310 121 0 0 chr3 19781926 19782239 -198254919 + AluSq SINE Alu 1 313 0 466 295 70 16 chr3 19782409 19782667 -198254491 + L1ME4a LINE L1 5566 5837 -284 402 293 24 69 chr3 19782699 19782831 -198254327 + L2 LINE L2 2334 2451 -863 2332 90 3 7 chr3 19782831 19783150 -198254008 + AluSx SINE Alu 1 312 0 402 293 24 69 chr3 19783150 19783263 -198253895 + L2 LINE L2 2451 2568 -746 218 264 0 11 chr3 19783277 19783368 -198253790 + C-rich Low_complexity Low_complexity 3 92 0 342 0 0 0 chr3 19784682 19784720 -198252438 + (TA)n Simple_repeat Simple_repeat 2 39 0 4317 238 49 53 chr3 19784721 19786186 -198250972 + L1 LINE L1 2488 3947 -2199 2137 126 0 41 chr3 19786186 19786504 -198250654 + AluSx SINE Alu 7 311 -1 4317 238 49 53 chr3 19786504 19786721 -198250437 + L1 LINE L1 3947 4163 -1983 317 278 111 38 chr3 19786856 19787209 -198249949 - L2 LINE L2 -38 3275 2833 305 243 27 0 chr3 19787228 19787302 -198249856 - MIR SINE MIR -108 154 79 416 234 19 9 chr3 19787728 19787835 -198249323 + L1MEd LINE L1 960 1067 -5052 209 387 75 0 chr3 19788150 19788243 -198248915 + L2 LINE L2 3170 3269 -3 194 296 22 74 chr3 19788234 19788369 -198248789 - MIR SINE MIR -128 134 7 * 1980 133 0 0 chr3 19788947 19789218 -198247940 + AluSx SINE Alu 25 295 -17 398 248 7 97 chr3 19789346 19789392 -198247766 + MER5A DNA MER1_type 32 81 -108 2169 125 7 0 chr3 19789392 19789680 -198247478 + AluSq SINE Alu 1 290 -23 398 248 7 97 chr3 19789680 19789778 -198247380 + MER5A DNA MER1_type 81 163 -26 218 340 21 64 chr3 19789802 19789943 -198247215 + MIR SINE MIR 58 192 -70 888 135 0 35 chr3 19790563 19790704 -198246454 - AluJo SINE Alu -176 136 1 286 277 78 21 chr3 19792846 19792987 -198244171 - L1MC4a LINE L1 -1815 5993 5845 306 73 0 0 chr3 19794731 19794772 -198242386 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 408 67 0 0 chr3 19795776 19795836 -198241322 + (TG)n Simple_repeat Simple_repeat 2 61 0 624 210 193 8 chr3 19795854 19796097 -198241061 + MLT1F LTR MaLR 185 472 -70 913 252 33 4 chr3 19796148 19796390 -198240768 + LTR42 LTR ERVL 247 495 0 267 276 0 13 chr3 19796392 19796468 -198240690 + MLT1F LTR MaLR 493 567 0 264 352 48 9 chr3 19796559 19796664 -198240494 + L2 LINE L2 3180 3288 -25 445 298 41 41 chr3 19796700 19796871 -198240287 + MIR SINE MIR 23 193 -69 223 244 11 11 chr3 19797254 19797344 -198239814 + (TG)n Simple_repeat Simple_repeat 1 90 0 411 292 188 48 chr3 19797457 19797834 -198239324 - LTR16C LTR ERVL 0 491 62 248 298 145 0 chr3 19798336 19798467 -198238691 + LTR67 LTR ERVL 408 557 0 281 283 169 5 chr3 19798513 19798697 -198238461 - L1ME4a LINE L1 -52 6069 5856 740 330 78 23 chr3 19798742 19799258 -198237900 + L2 LINE L2 2713 3249 -64 2322 96 78 20 chr3 19799332 19799676 -198237482 + THE1B LTR MaLR 1 364 0 8251 79 15 1 chr3 19799676 19800846 -198236312 + THE1B-int LTR MaLR 1 1187 -393 2224 94 3 7 chr3 19801065 19801374 -198235784 + AluSg SINE Alu 2 309 -1 251 239 60 30 chr3 19801457 19801524 -198235634 - MIR SINE MIR -58 150 82 195 362 13 80 chr3 19802594 19802818 -198234340 - L2 LINE L2 -467 2847 2639 316 364 111 10 chr3 19802821 19803019 -198234139 - MIR SINE MIR -4 258 41 246 349 37 0 chr3 19803051 19803160 -198233998 + MIR SINE MIR 64 176 -86 255 245 60 26 chr3 19803939 19804015 -198233143 + MIR3 SINE MIR 78 159 -49 689 229 49 22 chr3 19804017 19804200 -198232958 + MER5A DNA MER1_type 2 189 0 572 284 162 8 chr3 19804583 19805292 -198231866 + L2 LINE L2 2234 3059 -254 409 233 107 13 chr3 19805429 19805584 -198231574 + MIR SINE MIR 59 245 -17 345 307 30 0 chr3 19805752 19805853 -198231305 + MLT1F1 LTR MaLR 6 109 -458 1258 224 27 62 chr3 19805853 19806224 -198230934 - MLT1A1 LTR MaLR 0 365 8 980 218 214 57 chr3 19806223 19806611 -198230547 + MLT1F1 LTR MaLR 100 541 -1 * 1525 234 71 5 chr3 19807046 19807469 -198229689 + L1MB7 LINE L1 5725 6175 -9 485 313 65 9 chr3 19808422 19808639 -198228519 - L2 LINE L2 -1 3312 3084 516 259 98 15 chr3 19808651 19808856 -198228302 - MLT1A1 LTR MaLR 0 365 144 476 267 46 24 chr3 19808949 19809046 -198228112 + L1MEc LINE L1 1298 1391 -5216 2620 155 38 5 chr3 19809046 19809492 -198227666 + LOR1b LTR ERV1 1 461 0 476 267 46 24 chr3 19809492 19809722 -198227436 + L1MEc LINE L1 1391 1833 -4774 339 250 36 0 chr3 19809732 19809816 -198227342 + L1MEc LINE L1 2673 2759 -3667 4254 113 117 78 chr3 19809816 19811217 -198225941 + pTR5 LTR ERV1 66 2438 0 2261 68 0 0 chr3 19811232 19811544 -198225614 + AluY SINE Alu 1 312 0 552 212 101 0 chr3 19811544 19811733 -198225425 + L1MEc LINE L1 2758 2965 -3461 270 306 234 8 chr3 19811756 19811880 -198225278 - L2 LINE L2 0 3272 3121 519 284 25 31 chr3 19812099 19812261 -198224897 + L2 LINE L2 3153 3313 0 341 330 18 37 chr3 19812419 19812637 -198224521 + MLT1K LTR MaLR 3 216 -372 361 294 20 20 chr3 19812684 19812837 -198224321 + (TGGA)n Simple_repeat Simple_repeat 4 156 0 271 172 16 0 chr3 19812845 19812909 -198224249 + L1MEc LINE L1 2983 3047 -3379 2900 251 67 72 chr3 19812911 19813126 -198224032 + L1MEc LINE L1 3137 3352 -3074 2130 113 0 25 chr3 19813126 19813411 -198223747 + AluY SINE Alu 1 279 -32 354 45 0 0 chr3 19813411 19813455 -198223703 + (CAAA)n Simple_repeat Simple_repeat 3 46 0 2130 113 0 25 chr3 19813455 19813488 -198223670 + AluY SINE Alu 279 311 0 2900 251 67 72 chr3 19813488 19813560 -198223598 + L1MEc LINE L1 3352 3423 -3003 1785 127 58 0 chr3 19813560 19813835 -198223323 + AluSg SINE Alu 16 306 -4 2900 251 67 72 chr3 19813835 19813897 -198223261 + L1MEc LINE L1 3423 3484 -2942 291 122 0 0 chr3 19813897 19813946 -198223212 - MER58 DNA MER1_type 0 2420 2372 2900 251 67 72 chr3 19813946 19815077 -198222081 + L1MEc LINE L1 3484 4658 -1768 213 326 143 0 chr3 19815381 19815479 -198221679 + MIR SINE MIR 41 152 -56 288 331 201 14 chr3 19815485 19815778 -198221380 + L2 LINE L2 2965 3312 -1 207 264 139 0 chr3 19815910 19815982 -198221176 - MIR SINE MIR -75 133 52 303 284 98 0 chr3 19816432 19816534 -198220624 + L2 LINE L2 3145 3256 -16 360 158 20 10 chr3 19817202 19817303 -198219855 + CT-rich Low_complexity Low_complexity 2 103 0 270 250 15 0 chr3 19817322 19817390 -198219768 + (TCCA)n Simple_repeat Simple_repeat 3 71 0 314 291 227 0 chr3 19817400 19817510 -198219648 - L2 LINE L2 -13 3259 3125 579 251 23 46 chr3 19817726 19817901 -198219257 + L2 LINE L2 3141 3311 -2 1714 188 28 6 chr3 19817925 19818277 -198218881 - MLT1A1 LTR MaLR 0 365 6 975 218 9 18 chr3 19818664 19818889 -198218269 - MIR SINE MIR -30 232 10 405 296 206 0 chr3 19818902 19819145 -198218013 + MLT1K LTR MaLR 230 522 -66 360 174 174 9 chr3 19819955 19820070 -198217088 + L2 LINE L2 2921 3054 -259 1520 153 80 22 chr3 19820545 19820819 -198216339 + AluJo SINE Alu 13 302 -10 234 0 0 0 chr3 19821721 19821747 -198215411 + (T)n Simple_repeat Simple_repeat 1 26 0 937 53 0 0 chr3 19821747 19821860 -198215298 - AluSq/x SINE Alu -180 133 21 779 237 49 95 chr3 19822199 19822297 -198214861 + MLT1C LTR MaLR 2 103 -364 2571 48 0 10 chr3 19822297 19822611 -198214547 + AluY SINE Alu 1 311 0 779 237 49 95 chr3 19822611 19822963 -198214195 + MLT1C LTR MaLR 103 431 -36 1296 206 31 34 chr3 19824119 19824474 -198212684 - MLT1B LTR MaLR -29 361 8 237 293 78 37 chr3 19824496 19824687 -198212471 + LTR33 LTR ERVL 161 359 -162 1670 241 40 2 chr3 19825039 19825735 -198211423 + L1MD2 LINE L1 4929 5648 -711 863 216 0 5 chr3 19825737 19825931 -198211227 + L1MD2 LINE L1 5769 5961 -398 1381 195 66 18 chr3 19825937 19826270 -198210888 + L1MD2 LINE L1 6010 6358 -1 760 254 117 0 chr3 19826346 19826602 -198210556 + MLT1G3 LTR MaLR 143 428 -102 480 111 0 0 chr3 19826962 19827034 -198210124 + (TG)n Simple_repeat Simple_repeat 1 72 0 187 306 69 0 chr3 19827979 19828051 -198209107 - MIR SINE MIR -99 163 87 213 264 18 117 chr3 19828835 19828998 -198208160 + MIR SINE MIR 3 149 -113 585 98 33 54 chr3 19830116 19830300 -198206858 + (CA)n Simple_repeat Simple_repeat 1 180 0 515 148 40 17 chr3 19830347 19830523 -198206635 + (CA)n Simple_repeat Simple_repeat 1 180 0 336 298 128 21 chr3 19831022 19831163 -198205995 + MIR SINE MIR 66 221 -41 270 352 61 37 chr3 19831290 19831490 -198205668 - MIR SINE MIR -41 221 14 1759 153 35 0 chr3 19831573 19831740 -198205418 - AluJo SINE Alu -12 300 117 207 0 0 0 chr3 19831740 19831763 -198205395 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1759 153 35 0 chr3 19831763 19831883 -198205275 - AluJo SINE Alu -195 117 3 3852 175 51 3 chr3 19832350 19833053 -198204105 + L1MB3 LINE L1 5446 6182 -1 291 343 20 0 chr3 19833127 19833226 -198203932 - MIR SINE MIR -32 230 130 428 263 66 20 chr3 19833229 19833381 -198203777 + LTR33 LTR ERVL 49 207 -314 455 153 10 0 chr3 19833403 19833501 -198203657 + (CA)n Simple_repeat Simple_repeat 2 100 0 335 252 46 23 chr3 19833513 19833644 -198203514 + LTR33 LTR ERVL 338 471 -50 180 237 0 0 chr3 19834075 19834113 -198203045 - L2 LINE L2 -17 3255 3218 2304 84 16 0 chr3 19834953 19835337 -198201821 - AluSq SINE Alu 0 389 1 293 250 7 0 chr3 19835695 19835835 -198201323 + (TCCA)n Simple_repeat Simple_repeat 2 142 0 694 168 10 0 chr3 19835856 19836074 -198201084 + (TCCA)n Simple_repeat Simple_repeat 1 220 0 598 202 11 0 chr3 19836086 19836264 -198200894 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 669 203 0 0 chr3 19836276 19836453 -198200705 + (TCCA)n Simple_repeat Simple_repeat 3 179 0 510 184 19 0 chr3 19836454 19836557 -198200601 + Tigger7 DNA MER2_type 2476 2580 -7 700 221 0 0 chr3 19836568 19836731 -198200427 + L1ME LINE L1 5336 5498 -664 255 314 23 0 chr3 19836754 19836840 -198200318 + L1ME3 LINE L1 6073 6160 -2 216 302 225 22 chr3 19837368 19837782 -198199376 + L2 LINE L2 2268 2765 -549 388 325 155 20 chr3 19837838 19838232 -198198926 + L2 LINE L2 2867 3313 0 327 244 89 22 chr3 19840216 19840306 -198196852 + MIR SINE MIR 34 129 -79 184 387 32 11 chr3 19840358 19840451 -198196707 + MIR SINE MIR 2 96 -166 385 253 61 0 chr3 19841270 19841369 -198195789 + L2 LINE L2 3209 3313 0 188 219 0 24 chr3 19841371 19841412 -198195746 - L2 LINE L2 -94 3219 3180 274 344 49 0 chr3 19841435 19841557 -198195601 - L3 LINE CR1 -86 1491 1364 213 337 74 16 chr3 19841916 19842106 -198195052 + L2 LINE L2 2868 3068 -204 531 215 40 40 chr3 19842251 19842400 -198194758 + MIR SINE MIR 31 179 -83 3085 206 45 37 chr3 19842407 19843779 -198193379 - L1MB8 LINE L1 -169 6009 4629 180 404 10 0 chr3 19843785 19843884 -198193274 - L3 LINE CR1 -730 847 748 347 242 297 12 chr3 19846653 19846996 -198190162 - LTR33 LTR ERVL -66 455 15 859 269 80 12 chr3 19847394 19847732 -198189426 - L1MB7 LINE L1 -64 6120 5760 403 228 98 53 chr3 19847854 19848100 -198189058 + MER113 DNA MER1_type? 6 262 -259 196 260 0 20 chr3 19848295 19848345 -198188813 + MIR3 SINE MIR 160 208 0 250 273 78 0 chr3 19848535 19848612 -198188546 + L2 LINE L2 3188 3270 -2 398 306 148 29 chr3 19849157 19849435 -198187723 + L2 LINE L2 2456 2766 -548 265 179 170 18 chr3 19850391 19850503 -198186655 - MER102a DNA MER1_type -6 324 196 408 174 35 0 chr3 19852247 19852333 -198184825 - L1MB4 LINE L1 -1 6179 6091 2406 168 46 17 chr3 19852333 19852867 -198184291 - L1MB3 LINE L1 -133 6050 5498 186 335 125 13 chr3 19853501 19853653 -198183505 - L3 LINE CR1 -1 1576 1408 433 361 66 0 chr3 19854171 19854398 -198182760 + MIR SINE MIR 2 243 -19 217 336 96 28 chr3 19855785 19856035 -198181123 - L2 LINE L2 -2 3311 3045 2206 80 10 3 chr3 19856108 19856407 -198180751 - AluSx SINE Alu -11 301 1 722 241 23 11 chr3 19856432 19856606 -198180552 + MIR SINE MIR 1 176 -86 460 228 30 0 chr3 19856604 19856705 -198180453 - L2 LINE L2 -1 3312 3209 * 778 124 0 9 chr3 19856720 19856833 -198180325 + FLAM_C SINE Alu 24 135 -8 648 124 33 50 chr3 19857219 19857321 -198179837 + FRAM SINE Alu 57 158 -154 2379 87 3 0 chr3 19857321 19857631 -198179527 + AluSx SINE Alu 1 311 -1 648 124 33 50 chr3 19857631 19857649 -198179509 + FRAM SINE Alu 158 175 -1 434 274 42 10 chr3 19857651 19857851 -198179307 - L2 LINE L2 -86 3227 2712 622 307 117 4 chr3 19858848 19859277 -198177881 + L2 LINE L2 2776 3272 0 297 304 76 35 chr3 19859885 19860056 -198177102 + L2 LINE L2 2889 3066 -247 * 721 237 24 26 chr3 19860028 19860212 -198176946 + MIR SINE MIR 51 235 -27 8201 115 35 11 chr3 19860224 19861490 -198175668 - HSMAR2 DNA Mariner -1 1301 5 205 277 0 0 chr3 19861490 19861537 -198175621 + (TG)n Simple_repeat Simple_repeat 1 47 0 1057 200 177 16 chr3 19861541 19861851 -198175307 - MLT1A2 LTR MaLR 0 374 15 786 313 47 33 chr3 19861989 19862417 -198174741 + MER20B DNA MER1_type 311 744 -39 1765 201 60 0 chr3 19862934 19863385 -198173773 + L1MB3 LINE L1 5706 6183 0 322 344 33 13 chr3 19863385 19863536 -198173622 - MER5A DNA MER1_type -28 161 8 430 299 113 25 chr3 19863997 19864201 -198172957 + MIR SINE MIR 20 241 -21 416 265 0 24 chr3 19864416 19864586 -198172572 + (TG)n Simple_repeat Simple_repeat 1 166 0 181 247 137 0 chr3 19867885 19867958 -198169200 + MIR SINE MIR 63 145 -63 395 218 126 23 chr3 19868533 19868707 -198168451 + L2 LINE L2 2873 3064 -249 1098 253 29 9 chr3 19869914 19870300 -198166858 + L1MB3 LINE L1 5810 6184 0 1649 161 53 27 chr3 19870315 19870614 -198166544 + AluJo SINE Alu 1 307 -5 237 32 0 0 chr3 19871347 19871378 -198165780 - MER103 DNA DNA -83 83 53 419 269 31 0 chr3 19872098 19872228 -198164930 + L1MB3 LINE L1 6041 6174 -9 186 305 17 0 chr3 19872656 19872715 -198164443 - MIR SINE MIR -87 121 62 333 254 82 33 chr3 19872819 19872941 -198164217 + L1ME3A LINE L1 6033 6160 -10 273 269 51 0 chr3 19873061 19873139 -198164019 + GA-rich Low_complexity Low_complexity 4 85 0 274 300 0 73 chr3 19874213 19874323 -198162835 - L2 LINE L2 -1 3312 3211 845 150 0 0 chr3 19874418 19874545 -198162613 - AluSg/x SINE Alu -19 293 167 1345 240 77 52 chr3 19875238 19875703 -198161455 - MLT1H LTR MaLR -16 533 52 2031 130 3 3 chr3 19875703 19876004 -198161154 + AluSx SINE Alu 1 301 -11 1345 240 77 52 chr3 19876004 19876058 -198161100 - MLT1H LTR MaLR -497 52 1 1630 249 23 0 chr3 19876325 19876758 -198160400 + L1MB3 LINE L1 5739 6181 -2 286 370 66 11 chr3 19877770 19877951 -198159207 - L3 LINE CR1 -730 847 657 197 351 26 0 chr3 19878845 19878922 -198158236 + MIR SINE MIR 148 226 -36 446 177 0 0 chr3 19878961 19879040 -198158118 - MIR SINE MIR -105 157 79 249 125 0 0 chr3 19879040 19879080 -198158078 - MIR SINE MIR -144 118 79 278 125 0 0 chr3 19879080 19879120 -198158038 - MIR SINE MIR -144 118 79 454 194 48 0 chr3 19879120 19879223 -198157935 - MIR SINE MIR -144 118 11 2443 68 0 3 chr3 19879381 19879689 -198157469 - AluY SINE Alu -4 307 1 456 194 93 37 chr3 19879821 19879929 -198157229 + MIR SINE MIR 36 149 -59 287 321 21 1 chr3 19880085 19880190 -198156968 + MIR SINE MIR 41 147 -61 1775 105 46 56 chr3 19880633 19880819 -198156339 - AluSx SINE Alu -9 303 120 330 45 0 0 chr3 19880819 19880863 -198156295 + (TTTTA)n Simple_repeat Simple_repeat 1 44 0 1775 105 46 56 chr3 19880863 19880982 -198156176 - AluSx SINE Alu -192 120 1 1002 286 135 12 chr3 19880983 19881680 -198155478 + L2 LINE L2 2519 3313 0 4217 174 11 28 chr3 19882237 19882936 -198154222 - L1MB3 LINE L1 -2 6181 5495 2381 84 0 0 chr3 19882936 19883247 -198153911 - AluY SINE Alu 0 311 1 4217 174 11 28 chr3 19883247 19883335 -198153823 - L1MB3 LINE L1 -688 5495 5407 726 235 5 51 chr3 19883356 19883552 -198153606 - MIR SINE MIR -46 216 30 229 283 91 0 chr3 19885025 19885124 -198152034 - MIR SINE MIR -114 148 41 1006 155 0 0 chr3 19885833 19885988 -198151170 - FRAM SINE Alu -13 163 9 636 234 119 35 chr3 19886083 19886284 -198150874 + MER20 DNA MER1_type 1 218 -1 266 102 44 257 chr3 19886371 19886577 -198150581 + L1MB4 LINE L1 6019 6180 0 198 302 47 35 chr3 19886681 19886767 -198150391 - MIR SINE MIR -87 175 89 547 270 37 11 chr3 19887154 19887342 -198149816 + MIR SINE MIR 45 237 -25 2109 182 266 16 chr3 19887937 19888569 -198148589 + L1MC1 LINE L1 5544 6333 0 1762 166 13 19 chr3 19888615 19888929 -198148229 + AluJo SINE Alu 1 312 0 346 343 120 0 chr3 19889106 19889389 -198147769 + L2 LINE L2 2492 2808 -506 266 265 20 41 chr3 19890317 19890415 -198146743 + GA-rich Low_complexity Low_complexity 5 100 0 197 261 54 33 chr3 19890871 19890963 -198146195 - L2 LINE L2 -27 3245 3152 568 266 85 25 chr3 19891388 19891748 -198145410 + LTR16A LTR ERVL 59 457 0 241 271 57 0 chr3 19892633 19892703 -198144455 + MIR SINE MIR 100 173 -89 2265 183 55 36 chr3 19892743 19893208 -198143950 + L1MB3 LINE L1 5610 6090 -93 1546 165 4 8 chr3 19893208 19893491 -198143667 + AluSx SINE Alu 29 310 0 2265 183 55 36 chr3 19893491 19893586 -198143572 + L1MB3 LINE L1 6090 6182 -1 1953 90 19 4 chr3 19893668 19893935 -198143223 - AluSg SINE Alu -19 291 21 225 274 41 0 chr3 19894064 19894137 -198143021 + MIR SINE MIR 77 152 -110 554 198 6 0 chr3 19895016 19895193 -198141965 + CT-rich Low_complexity Low_complexity 1 178 0 996 307 30 30 chr3 19895753 19896186 -198140972 - MLT1J LTR MaLR -78 433 1 220 204 0 0 chr3 19896326 19896370 -198140788 - MIR SINE MIR -96 166 123 2132 162 16 14 chr3 19897220 19897584 -198139574 + MLT1A1 LTR MaLR 1 365 0 2519 61 0 0 chr3 19897822 19898133 -198139025 - AluY SINE Alu 0 311 1 498 288 8 0 chr3 19898429 19898554 -198138604 + MIR SINE MIR 20 145 -117 268 276 29 48 chr3 19898856 19898961 -198138197 - Charlie7 DNA MER1_type -2505 107 5 196 247 21 65 chr3 19899210 19899303 -198137855 - L2 LINE L2 -243 3029 2941 1235 241 33 5 chr3 19900008 19900509 -198136649 + MLT1H1 LTR MaLR 1 547 -8 199 311 107 0 chr3 19900548 19900651 -198136507 - L2 LINE L2 0 3313 3200 2179 210 33 42 chr3 19900862 19901312 -198135846 + L1M4c LINE L1 2214 2667 -3715 2360 88 0 0 chr3 19901312 19901618 -198135540 + AluY SINE Alu 1 306 -5 2179 210 33 42 chr3 19901618 19901728 -198135430 + L1M4c LINE L1 2667 2777 -3605 1748 190 3 0 chr3 19901728 19902039 -198135119 + AluJo SINE Alu 1 312 0 2179 210 33 42 chr3 19902039 19902335 -198134823 + L1M4c LINE L1 2777 3056 -3326 268 288 0 25 chr3 19902427 19902507 -198134651 + MIR SINE MIR 116 193 -69 562 260 34 64 chr3 19903250 19903454 -198133704 - MIR SINE MIR -57 205 8 576 252 77 42 chr3 19903863 19904173 -198132985 + L2 LINE L2 2615 2935 -379 319 279 0 47 chr3 19904165 19904294 -198132864 - MIR SINE MIR -81 181 59 * 598 308 76 13 chr3 19905198 19905435 -198131723 + MIR SINE MIR 2 253 -9 280 218 188 0 chr3 19905751 19905852 -198131306 + L2 LINE L2 2939 3058 -214 2565 61 0 0 chr3 19906295 19906605 -198130553 - AluY SINE Alu -1 310 1 195 320 32 40 chr3 19906712 19906837 -198130321 - MIR SINE MIR -116 146 23 252 59 0 0 chr3 19907324 19907358 -198129800 + (A)n Simple_repeat Simple_repeat 1 34 0 2155 96 0 3 chr3 19908750 19909032 -198128126 + AluSx SINE Alu 1 281 -31 575 302 23 18 chr3 19909040 19909288 -198127870 + MIR SINE MIR 3 250 -12 252 272 86 0 chr3 19909414 19909495 -198127663 - L2 LINE L2 -1 3312 3225 366 276 89 23 chr3 19910212 19910444 -198126714 - MIR SINE MIR 0 262 13 346 264 203 14 chr3 19910842 19910990 -198126168 + MER5A DNA MER1_type 9 184 -5 41 48 0 0 chr3 19912963 19913025 -198124133 + GC_rich Low_complexity Low_complexity 1 62 0 353 300 0 32 chr3 19913088 19913291 -198123867 + C-rich Low_complexity Low_complexity 1 196 0 1390 86 11 0 chr3 19913417 19913603 -198123555 + AluSg/x SINE Alu 116 303 -9 1473 177 95 28 chr3 19913622 19914012 -198123146 - MSTA LTR MaLR 0 428 13 290 340 28 7 chr3 19914981 19915125 -198122033 + L1ME4a LINE L1 5514 5660 -461 324 376 47 27 chr3 19915212 19915361 -198121797 + L1ME4a LINE L1 5771 5922 -199 567 260 130 10 chr3 19915913 19916105 -198121053 + MIR SINE MIR 34 248 -14 570 260 215 10 chr3 19916866 19917066 -198120092 + MIR SINE MIR 2 242 -20 290 236 12 24 chr3 19917337 19917457 -198119701 - MLT1J2 LTR MaLR -77 434 259 400 252 10 0 chr3 19917700 19917803 -198119355 - MLT1J LTR MaLR -335 176 73 408 302 33 33 chr3 19918396 19918578 -198118580 + Charlie8 DNA MER1_type 1 182 -2235 205 245 306 0 chr3 19919271 19919369 -198117789 - L2 LINE L2 0 3272 3145 913 245 5 0 chr3 19919389 19919577 -198117581 + MIR SINE MIR 14 202 -60 361 211 167 0 chr3 19919617 19919707 -198117451 - L2 LINE L2 -6 3266 3162 326 309 134 7 chr3 19920469 19920618 -198116540 + MIR SINE MIR 35 202 -60 314 289 10 21 chr3 19920622 19920719 -198116439 - L2 LINE L2 -39 3274 3179 181 319 69 26 chr3 19920929 19921045 -198116113 - MIR SINE MIR -70 192 72 1649 157 4 18 chr3 19921183 19921477 -198115681 - AluJo SINE Alu 0 304 15 424 285 95 14 chr3 19921628 19921849 -198115309 + L2 LINE L2 2158 2396 -918 518 120 0 0 chr3 19922053 19922128 -198115030 - AluY SINE Alu -15 294 220 1298 57 6 0 chr3 19922129 19922286 -198114872 - AluY SINE Alu -153 158 1 388 316 111 22 chr3 19922287 19922756 -198114402 + L2 LINE L2 2688 3313 0 316 254 45 27 chr3 19923084 19923194 -198113964 - L2 LINE L2 -251 3021 2910 531 243 176 27 chr3 19923345 19923646 -198113512 + L2 LINE L2 2624 2969 -345 220 290 250 0 chr3 19924389 19924513 -198112645 + L2 LINE L2 3010 3164 -149 1219 211 37 9 chr3 19924516 19924839 -198112319 - L1MB7 LINE L1 -9 6175 5844 400 375 47 32 chr3 19924889 19925343 -198111815 + L2 LINE L2 2817 3312 -1 491 307 78 43 chr3 19926149 19926326 -198110832 + MIR SINE MIR 20 208 -54 2596 49 0 0 chr3 19926326 19926633 -198110525 + AluY SINE Alu 1 307 -4 491 307 78 43 chr3 19926633 19926686 -198110472 + MIR SINE MIR 208 258 -4 272 327 59 39 chr3 19926808 19926961 -198110197 + L2 LINE L2 2896 3051 -262 231 214 0 0 chr3 19927086 19927128 -198110030 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 328 306 58 8 chr3 19927188 19927309 -198109849 + L2 LINE L2 3185 3311 -2 545 220 44 38 chr3 19928073 19928232 -198108926 - MER5A DNA MER1_type -18 171 12 342 296 143 42 chr3 19928726 19928915 -198108243 + MIR SINE MIR 22 229 -33 995 258 64 50 chr3 19929352 19929709 -198107449 - MLT1K LTR MaLR -144 444 83 204 304 157 31 chr3 19930012 19930203 -198106955 + L3 LINE CR1 1347 1561 -16 426 285 70 0 chr3 19930515 19930715 -198106443 - L2 LINE L2 -288 3025 2812 184 292 0 0 chr3 19930850 19930898 -198106260 + L2 LINE L2 2999 3046 -267 569 336 60 7 chr3 19932082 19932380 -198104778 - L2 LINE L2 -2 3311 2998 218 303 15 0 chr3 19932724 19932790 -198104368 + L2 LINE L2 3201 3267 -5 299 326 90 14 chr3 19933072 19933216 -198103942 - L2 LINE L2 0 3313 3159 1743 186 12 75 chr3 19933217 19933242 -198103916 - L1MB7 LINE L1 -18 6166 6141 2388 65 0 10 chr3 19933242 19933552 -198103606 - AluY SINE Alu -4 307 1 1743 186 12 75 chr3 19933552 19933894 -198103264 - L1MB7 LINE L1 -43 6141 5846 1733 148 14 31 chr3 19933894 19934184 -198102974 - AluJb SINE Alu -23 289 5 1743 186 12 75 chr3 19934184 19934325 -198102833 - L1MB7 LINE L1 -338 5846 5698 187 320 51 0 chr3 19934557 19934635 -198102523 - L2 LINE L2 -1384 1930 1849 534 271 118 50 chr3 19934658 19935041 -198102117 - L2 LINE L2 -351 2963 2555 1564 209 88 29 chr3 19935445 19935819 -198101339 + MSTD LTR MaLR 1 396 0 311 243 103 0 chr3 19935819 19935926 -198101232 - MER113 DNA MER1_type? -337 184 67 291 164 73 0 chr3 19936009 19936064 -198101094 - MIR SINE MIR -55 153 95 665 315 156 8 chr3 19936478 19936862 -198100296 - L2 LINE L2 0 3313 2873 291 293 80 17 chr3 19937247 19937395 -198099763 - MIR SINE MIR -52 156 3 257 309 200 36 chr3 19938010 19938230 -198098928 - L3 LINE CR1 -10 1567 1312 395 288 25 0 chr3 19938233 19938351 -198098807 + MIR SINE MIR 62 182 -80 320 388 158 8 chr3 19938400 19938766 -198098392 - L3 LINE CR1 -226 1351 931 583 241 62 7 chr3 19938932 19939077 -198098081 + L2 LINE L2 3119 3271 -1 303 348 45 0 chr3 19939602 19939714 -198097444 - L2 LINE L2 -4 3309 3193 270 306 45 36 chr3 19939712 19939823 -198097335 - MIR SINE MIR -29 233 122 * 505 228 41 28 chr3 19939989 19940134 -198097024 - MIR3 SINE MIR -59 149 3 533 338 130 20 chr3 19940295 19940851 -198096307 - L2 LINE L2 0 3272 2637 2012 92 10 39 chr3 19941075 19941381 -198095777 + AluY SINE Alu 7 303 -8 2368 55 0 39 chr3 19941412 19941723 -198095435 + AluY SINE Alu 1 299 -12 362 303 62 62 chr3 19942036 19942244 -198094914 + MIR SINE MIR 55 262 0 254 323 160 10 chr3 19942382 19942670 -198094488 - MER102b DNA MER1_type 0 341 11 804 226 43 0 chr3 19942689 19942853 -198094305 - AluJb SINE Alu -2 310 140 242 331 42 0 chr3 19942894 19943036 -198094122 - MER117 DNA MER1_type -6 191 44 2257 96 7 0 chr3 19943227 19943529 -198093629 - AluY SINE Alu -7 304 1 1194 202 41 8 chr3 19943531 19943979 -198093179 - L1M4 LINE L1 -3705 2677 2214 199 311 107 0 chr3 19944190 19944293 -198092865 + L2 LINE L2 3200 3313 0 1235 241 33 5 chr3 19944332 19944833 -198092325 - MLT1H1 LTR MaLR -8 547 1 196 247 21 65 chr3 19945538 19945631 -198091527 + L2 LINE L2 2941 3029 -243 296 284 28 46 chr3 19945876 19945985 -198091173 + Charlie7 DNA MER1_type 1 107 -2505 498 288 8 0 chr3 19946287 19946412 -198090746 - MIR SINE MIR -117 145 20 2518 58 0 0 chr3 19946708 19947019 -198090139 + AluY SINE Alu 1 311 0 2127 159 16 14 chr3 19947257 19947621 -198089537 - MLT1A1 LTR MaLR 0 365 1 215 204 0 0 chr3 19948469 19948513 -198088645 + MIR SINE MIR 123 166 -96 1110 316 28 28 chr3 19948653 19949086 -198088072 + MLT1J LTR MaLR 1 433 -78 533 203 6 0 chr3 19949645 19949822 -198087336 + GA-rich Low_complexity Low_complexity 1 178 0 1899 87 23 4 chr3 19950919 19951184 -198085974 + AluSg SINE Alu 21 290 -20 446 269 31 0 chr3 19951463 19951593 -198085565 - L1MB3 LINE L1 -9 6174 6041 1758 76 0 13 chr3 19951771 19952008 -198085150 + AluY SINE Alu 74 307 -4 1195 230 20 69 chr3 19952008 19952119 -198085039 + L1M4 LINE L1 2433 2548 -3598 1730 186 3 0 chr3 19952119 19952430 -198084728 + AluJo SINE Alu 1 312 0 1195 230 20 69 chr3 19952430 19952726 -198084432 + L1M4 LINE L1 2548 2820 -3326 262 288 0 25 chr3 19952818 19952898 -198084260 + MIR SINE MIR 116 193 -69 524 260 34 64 chr3 19953641 19953845 -198083313 - MIR SINE MIR -57 205 8 467 261 77 42 chr3 19954254 19954564 -198082594 + L2 LINE L2 2615 2935 -379 298 279 0 47 chr3 19954556 19954685 -198082473 - MIR SINE MIR -81 181 59 * 555 259 122 15 chr3 19955589 19955794 -198081364 + MIR SINE MIR 2 228 -34 278 206 196 0 chr3 19956142 19956239 -198080919 + L2 LINE L2 2939 3054 -218 2137 154 0 3 chr3 19956683 19956995 -198080163 - AluSx SINE Alu -1 311 1 270 0 0 0 chr3 19958396 19958426 -198078732 + (T)n Simple_repeat Simple_repeat 1 30 0 181 291 27 55 chr3 19958929 19959039 -198078119 + MIR SINE MIR 40 146 -116 1613 61 0 0 chr3 19959146 19959342 -198077816 + AluY SINE Alu 1 196 -115 2084 103 7 3 chr3 19959800 19960100 -198077058 - AluSx SINE Alu -11 301 1 2313 58 0 39 chr3 19960189 19960498 -198076660 + AluY SINE Alu 3 299 -12 343 224 122 0 chr3 19960810 19960917 -198076241 + MIR SINE MIR 55 174 -88 325 323 160 10 chr3 19961156 19961444 -198075714 - MER102b DNA MER1_type 0 341 11 787 226 43 0 chr3 19961463 19961627 -198075531 - AluJb SINE Alu -2 310 140 278 331 42 0 chr3 19961668 19961810 -198075348 - MER117 DNA MER1_type -6 191 44 186 43 0 0 chr3 19962002 19962025 -198075133 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2019 108 0 4 chr3 19962025 19962304 -198074854 - AluSg SINE Alu -32 278 1 2045 87 56 0 chr3 19962510 19962796 -198074362 - AluY SINE Alu -8 303 2 526 287 118 4 chr3 19963569 19963775 -198073383 + Charlie2a DNA MER1_type 734 976 -1886 2084 108 7 0 chr3 19963775 19964070 -198073088 - AluSq SINE Alu -16 297 1 526 287 118 4 chr3 19964070 19964117 -198073041 + Charlie2a DNA MER1_type 976 1016 -1846 322 206 98 0 chr3 19965185 19965277 -198071881 + MER5A DNA MER1_type 9 109 -80 689 301 62 55 chr3 19965487 19965889 -198071269 - L2 LINE L2 -2 3270 2866 372 358 12 0 chr3 19965889 19966051 -198071107 - L1ME LINE L1 -329 5792 5629 227 184 0 20 chr3 19966553 19966602 -198070556 + MER53 DNA DNA 101 148 -41 672 265 0 6 chr3 19966787 19966953 -198070205 + MIR SINE MIR 33 197 -65 1949 86 32 4 chr3 19966969 19967248 -198069910 + AluSc SINE Alu 9 295 -14 2175 109 0 3 chr3 19967248 19967551 -198069607 + AluSp SINE Alu 1 302 -11 330 281 22 22 chr3 19967564 19967653 -198069505 - L1MC4 LINE L1 -1339 6703 6615 2330 83 0 0 chr3 19967653 19967953 -198069205 - AluY SINE Alu -11 300 1 610 317 117 0 chr3 19968035 19968335 -198068823 - L2 LINE L2 -97 3216 2882 654 172 94 56 chr3 19968335 19968515 -198068643 - MER53 DNA DNA -2 187 1 326 264 18 45 chr3 19969038 19969148 -198068010 + MIR SINE MIR 41 147 -61 289 336 29 0 chr3 19969636 19969740 -198067418 + MIR3 SINE MIR 88 194 -14 1516 199 2 114 chr3 19969822 19969994 -198067164 + MLT1A1 LTR MaLR 1 105 -260 1604 155 36 4 chr3 19969994 19970299 -198066859 + AluJb SINE Alu 3 316 0 1516 199 2 114 chr3 19970299 19970534 -198066624 + MLT1A1 LTR MaLR 105 365 0 216 272 37 62 chr3 19970823 19970904 -198066254 - MIR SINE MIR -81 181 103 471 228 62 168 chr3 19970949 19971159 -198065999 - MER113 DNA MER1_type? -52 469 238 2154 97 0 0 chr3 19971159 19971437 -198065721 - AluSx SINE Alu -32 280 3 471 228 62 168 chr3 19971437 19971636 -198065522 - MER113 DNA MER1_type? -283 238 124 678 203 0 36 chr3 19971636 19971774 -198065384 + FLAM_A SINE Alu 1 133 0 471 228 62 168 chr3 19971774 19971880 -198065278 - MER113 DNA MER1_type? -397 124 8 334 294 1 0 chr3 19971891 19971976 -198065182 + MIR SINE MIR 64 148 -69 2369 84 0 3 chr3 19972036 19972347 -198064811 - AluY SINE Alu -1 310 1 262 271 12 0 chr3 19972873 19972958 -198064200 - L1MDa LINE L1 -3951 2589 2504 326 265 127 48 chr3 19972959 19973148 -198064010 - L1MDa LINE L1 -4056 2484 2281 258 345 55 12 chr3 19973226 19973391 -198063767 - MIR SINE MIR -22 240 69 229 333 93 20 chr3 19973718 19973868 -198063290 - L2 LINE L2 0 3272 3112 2380 71 0 3 chr3 19973927 19974236 -198062922 + AluSc SINE Alu 1 308 -1 475 297 53 42 chr3 19974612 19974806 -198062352 - L1MC/D LINE L1 -456 5665 5478 2044 110 24 7 chr3 19974821 19975144 -198062014 + AluSp SINE Alu 1 313 0 379 322 30 35 chr3 19975149 19975351 -198061807 - L2 LINE L2 -166 3106 2906 273 369 33 0 chr3 19975522 19975644 -198061514 + MIR SINE MIR 18 143 -65 2520 196 111 6 chr3 19975900 19976405 -198060753 + LTR64 LTR ERVK 1 558 0 617 323 25 39 chr3 19976788 19977067 -198060091 + MER31-int LTR ERV1 349 623 -6135 1627 98 125 68 chr3 19977118 19977413 -198059745 - AluSx SINE Alu 0 312 1 1495 184 47 0 chr3 19977424 19977580 -198059578 - AluJb SINE Alu -21 291 115 198 0 0 0 chr3 19977580 19977602 -198059556 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1495 184 47 0 chr3 19977602 19977723 -198059435 - AluJb SINE Alu -197 115 1 472 241 225 8 chr3 19977953 19978206 -198058952 + MER31-int LTR ERV1 2820 3127 -1809 * 645 227 128 50 chr3 19978193 19978450 -198058708 + MER31-int LTR ERV1 2963 3251 -1685 1759 171 0 10 chr3 19978450 19978748 -198058410 + AluJb SINE Alu 5 299 -13 645 227 128 50 chr3 19978748 19978811 -198058347 + MER31-int LTR ERV1 3251 3308 -1628 2295 175 157 22 chr3 19979237 19979684 -198057474 + LTR64 LTR ERVK 1 521 -37 2203 88 3 0 chr3 19979684 19979978 -198057180 + AluSp SINE Alu 1 295 -18 2295 175 157 22 chr3 19979978 19980022 -198057136 + LTR64 LTR ERVK 521 558 0 271 256 0 49 chr3 19980308 19980390 -198056768 + MLT1H LTR MaLR 127 204 -345 225 220 17 17 chr3 19980590 19980649 -198056509 - Charlie8 DNA MER1_type -2277 140 82 303 172 0 0 chr3 19981032 19981090 -198056068 - L1ME LINE L1 -679 5485 5428 * 1282 198 45 44 chr3 19981089 19981589 -198055569 - L1MB8 LINE L1 0 6178 5680 2173 84 0 7 chr3 19981589 19981902 -198055256 - AluSg SINE Alu 0 311 1 1282 198 45 44 chr3 19981902 19982314 -198054844 - L1MB8 LINE L1 -498 5680 5092 2379 210 36 16 chr3 19982319 19983050 -198054108 - L1ME LINE L1 -738 5436 4693 261 257 57 38 chr3 19983098 19983203 -198053955 - MER20B DNA MER1_type -656 127 21 997 274 118 15 chr3 19983225 19983630 -198053528 + HAL1 LINE L1 1475 1921 -586 201 74 0 0 chr3 19983982 19984009 -198053149 + (GGGAA)n Simple_repeat Simple_repeat 1 27 0 1093 225 61 13 chr3 19984027 19984338 -198052820 - LTR16A LTR ERVL -15 435 110 254 280 92 19 chr3 19986273 19986480 -198050678 + L1M4 LINE L1 2945 3166 -2980 955 81 0 0 chr3 19986754 19986878 -198050280 - FLAM_C SINE Alu -19 124 1 2112 83 10 38 chr3 19986908 19987222 -198049936 - AluY SINE Alu -6 305 1 1651 117 103 34 chr3 19987279 19987570 -198049588 - AluSx SINE Alu 0 312 2 572 239 101 0 chr3 19987702 19987890 -198049268 + MIR SINE MIR 22 228 -34 251 241 69 0 chr3 19988957 19989044 -198048114 - MLT1I LTR MaLR -248 161 69 213 245 206 29 chr3 19989176 19989278 -198047880 - MIR SINE MIR -67 141 22 2373 59 0 0 chr3 19989377 19989667 -198047491 + AluY SINE Alu 1 290 -21 235 0 28 28 chr3 19989670 19989706 -198047452 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 205 255 160 43 chr3 19992460 19992554 -198044604 + MER91C DNA MER1_type 2 106 -34 2260 93 0 0 chr3 19994283 19994583 -198042575 + AluY SINE Alu 1 300 -11 1964 86 19 0 chr3 19994583 19994838 -198042320 + AluY SINE Alu 36 296 -15 187 207 69 103 chr3 19995070 19995157 -198042001 - MIR3 SINE MIR -34 174 91 22 56 0 0 chr3 19995379 19995415 -198041743 + AT_rich Low_complexity Low_complexity 1 36 0 254 283 33 79 chr3 19995830 19995982 -198041176 + L2 LINE L2 2970 3114 -158 237 276 147 26 chr3 19997456 19997572 -198039586 - MIR SINE MIR -111 151 22 559 326 121 0 chr3 19998765 19998980 -198038178 - MIR SINE MIR -6 256 16 180 352 106 14 chr3 19999469 19999611 -198037547 - MIR3 SINE MIR -24 184 30 562 243 79 53 chr3 20000279 20000583 -198036575 - MER113 DNA MER1_type? -209 312 1 689 285 29 5 chr3 20000803 20001010 -198036148 - MER58A DNA MER1_type -1 223 12 257 333 106 0 chr3 20001766 20001898 -198035260 + MIR SINE MIR 113 258 -4 239 294 144 20 chr3 20002179 20002325 -198034833 - MIR3 SINE MIR -25 183 20 340 214 48 24 chr3 20002535 20002619 -198034539 + MER74A LTR ERVL 411 496 -62 237 250 0 0 chr3 20003445 20003493 -198033665 + L2 LINE L2 3216 3263 -9 269 282 39 13 chr3 20003819 20003897 -198033261 + MIR SINE MIR 66 145 -63 313 271 225 0 chr3 20004063 20004214 -198032944 + MIR3 SINE MIR 3 187 -21 281 277 188 58 chr3 20005322 20005614 -198031544 + L2 LINE L2 2938 3267 -5 342 200 74 11 chr3 20005819 20005914 -198031244 - MER5A DNA MER1_type -80 109 9 279 162 7 24 chr3 20006511 20006660 -198030498 + AluJo SINE Alu 82 283 -19 1570 148 0 29 chr3 20007878 20008188 -198028970 + AluY SINE Alu 1 301 -10 2220 242 52 37 chr3 20008192 20008942 -198028216 + L1ME2 LINE L1 2971 3708 -2456 2267 69 0 41 chr3 20008942 20009259 -198027899 - AluSg SINE Alu -6 304 1 2220 242 52 37 chr3 20009259 20010389 -198026769 + L1ME2 LINE L1 3708 4819 -1345 2218 82 0 3 chr3 20010389 20010712 -198026446 - AluSq SINE Alu 0 322 1 2220 242 52 37 chr3 20010712 20011773 -198025385 + L1ME2 LINE L1 4819 6155 -9 180 0 0 0 chr3 20011785 20011805 -198025353 + (CAA)n Simple_repeat Simple_repeat 2 21 0 380 289 53 59 chr3 20012122 20012309 -198024849 - MIR SINE MIR -75 187 2 475 322 192 1 chr3 20012508 20012946 -198024212 - L2 LINE L2 -253 3060 2537 208 252 96 61 chr3 20013363 20013478 -198023680 - MIR3 SINE MIR -3 205 87 684 226 0 7 chr3 20013820 20013957 -198023201 - MER58A DNA MER1_type 0 136 1 246 320 31 0 chr3 20014057 20014154 -198023004 + MIR SINE MIR 30 129 -79 295 311 19 9 chr3 20015038 20015144 -198022014 + MIR SINE MIR 49 155 -107 220 167 28 28 chr3 20015306 20015378 -198021780 + CT-rich Low_complexity Low_complexity 4 75 0 362 300 111 12 chr3 20015379 20015808 -198021350 + L2 LINE L2 2681 3217 -96 180 111 0 0 chr3 20016361 20016388 -198020770 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 198 330 96 0 chr3 20016442 20016536 -198020622 + MIR SINE MIR 103 205 -57 562 144 21 0 chr3 20016538 20016635 -198020523 - MER58A DNA MER1_type 0 224 126 205 291 25 0 chr3 20017329 20017408 -198019750 - MIR SINE MIR -124 138 58 283 242 15 0 chr3 20017521 20017587 -198019571 + MIR SINE MIR 117 183 -79 281 203 0 17 chr3 20018161 20018220 -198018938 + MER58A DNA MER1_type 3 60 -164 394 206 56 63 chr3 20018485 20018611 -198018547 + MER69 DNA AcHobo 1 125 -2401 23 54 0 0 chr3 20018614 20018651 -198018507 + AT_rich Low_complexity Low_complexity 1 37 0 3159 167 27 20 chr3 20018700 20018752 -198018406 - L1MB3 LINE L1 0 6183 6133 2085 106 3 7 chr3 20018752 20019044 -198018114 - AluSc SINE Alu -18 291 1 3159 167 27 20 chr3 20019044 20019577 -198017581 - L1MB3 LINE L1 -50 6133 5594 1076 164 48 0 chr3 20019591 20019780 -198017378 - L1MA5A LINE L1 -4 6293 6096 1680 202 43 60 chr3 20019806 20019937 -198017221 - L1MB3 LINE L1 -591 5580 5448 2042 128 0 0 chr3 20019937 20020233 -198016925 - AluSg SINE Alu -14 296 1 2187 64 51 3 chr3 20020238 20020533 -198016625 - AluSc SINE Alu 0 309 1 1680 202 43 60 chr3 20020533 20021021 -198016137 - L1MB3 LINE L1 -727 5444 4973 189 0 0 0 chr3 20021025 20021046 -198016112 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 1072 100 13 7 chr3 20021069 20021219 -198015939 - AluSq/x SINE Alu -162 151 1 892 179 5 47 chr3 20021221 20021411 -198015747 - L1MB3 LINE L1 -1155 4991 4810 703 209 26 13 chr3 20021414 20021567 -198015591 + MER58A DNA MER1_type 43 197 -27 2041 132 0 3 chr3 20023024 20023327 -198013831 - AluSx SINE Alu -9 303 2 366 318 61 41 chr3 20023334 20023579 -198013579 - L1MC4 LINE L1 0 8042 7793 482 283 61 0 chr3 20024326 20024506 -198012652 - MIR SINE MIR -25 237 47 266 276 20 10 chr3 20024626 20024724 -198012434 + MIR SINE MIR 40 138 -124 193 167 93 0 chr3 20025479 20025533 -198011625 - MIR SINE MIR -94 114 56 250 266 169 0 chr3 20025676 20025853 -198011305 - L2 LINE L2 -215 3057 2851 1845 181 29 47 chr3 20025903 20026284 -198010874 - MLT1A2 LTR MaLR 0 374 1 2175 89 0 0 chr3 20027248 20027529 -198009629 - AluSc SINE Alu -28 281 1 217 313 0 12 chr3 20027573 20027656 -198009502 - MIR SINE MIR 0 262 181 2202 93 10 0 chr3 20027656 20027956 -198009202 + AluSx SINE Alu 1 303 -9 1708 168 102 14 chr3 20027975 20028327 -198008831 - MSTA LTR MaLR 0 428 46 208 274 41 0 chr3 20029038 20029111 -198008047 - MIR SINE MIR -110 152 77 1661 127 19 8 chr3 20029244 20029512 -198007646 + AluSg SINE Alu 21 291 -19 316 209 35 0 chr3 20029593 20029679 -198007479 - L1MB3 LINE L1 -1 6182 6094 237 250 0 0 chr3 20030355 20030403 -198006755 + L2 LINE L2 3216 3263 -9 269 282 39 13 chr3 20030729 20030807 -198006351 + MIR SINE MIR 66 145 -63 1958 172 16 19 chr3 20031380 20031746 -198005412 - MLT1A1 LTR MaLR 0 365 1 327 320 39 34 chr3 20032831 20033037 -198004121 - L3 LINE CR1 -28 1549 1343 2270 76 3 16 chr3 20033286 20033589 -198003569 - AluSp SINE Alu -14 299 1 595 297 28 10 chr3 20034207 20034584 -198002574 + LTR16C LTR ERVL 40 491 0 238 327 40 10 chr3 20034584 20034685 -198002473 - L2 LINE L2 -239 3033 2930 415 309 103 30 chr3 20034725 20035200 -198001958 + L1M4 LINE L1 3498 4007 -2139 269 103 0 0 chr3 20035682 20035721 -198001437 - L1ME3 LINE L1 -8 6154 6116 405 304 70 20 chr3 20035909 20036110 -198001048 + MIR SINE MIR 25 235 -27 433 103 0 0 chr3 20036691 20036749 -198000409 - Alu SINE Alu -259 59 2 244 388 27 13 chr3 20036789 20037013 -198000145 - L2 LINE L2 -377 2937 2711 582 299 81 42 chr3 20037585 20037920 -197999238 - L2 LINE L2 -8 3305 2958 302 293 48 32 chr3 20038042 20038230 -197998928 - L1M4 LINE L1 -3432 2714 2524 * 1029 248 30 87 chr3 20038219 20038297 -197998861 + L1M4 LINE L1 3347 3428 -2718 2295 73 0 10 chr3 20038297 20038598 -197998560 + AluY SINE Alu 1 298 -13 1029 248 30 87 chr3 20038598 20038818 -197998340 + L1M4 LINE L1 3428 3659 -2487 862 165 0 0 chr3 20038818 20038951 -197998207 - FLAM_A SINE Alu 0 133 1 1029 248 30 87 chr3 20038951 20039112 -197998046 + L1M4 LINE L1 3659 3780 -2366 2139 150 0 0 chr3 20039112 20039419 -197997739 + AluSx SINE Alu 1 307 -5 1029 248 30 87 chr3 20039419 20039453 -197997705 + L1M4 LINE L1 3780 3814 -2332 199 280 72 48 chr3 20039559 20039684 -197997474 + MIR SINE MIR 65 192 -70 353 279 26 45 chr3 20040482 20040636 -197996522 + MIR3 SINE MIR 2 152 -56 492 260 159 62 chr3 20041584 20041973 -197995185 + LTR33A LTR ERVL 77 503 -20 551 141 0 0 chr3 20042076 20042161 -197994997 - AluSg SINE Alu -224 86 2 658 216 36 30 chr3 20042282 20042449 -197994709 - LTR38 LTR ERV1 -386 170 3 371 257 9 19 chr3 20042755 20042860 -197994298 + MIR SINE MIR 88 191 -71 588 248 55 23 chr3 20042996 20043201 -197993957 - L1ME2 LINE L1 -76 6090 5874 559 243 0 40 chr3 20043201 20043349 -197993809 + FRAM SINE Alu 1 135 -41 457 212 73 36 chr3 20043512 20043649 -197993509 - L1M3 LINE L1 -594 5577 5436 1912 123 0 40 chr3 20043678 20044002 -197993156 - AluSx SINE Alu -1 311 1 1124 202 111 0 chr3 20044078 20044321 -197992837 + LTR48B LTR ERV1 1 270 -374 4092 103 9 4 chr3 20044332 20044883 -197992275 - MER41A LTR ERV1 0 554 1 701 157 45 8 chr3 20044891 20045007 -197992151 - MER41B LTR ERV1 0 635 515 367 146 0 0 chr3 20045007 20045062 -197992096 + Alu SINE Alu 1 55 -253 241 240 130 30 chr3 20045320 20045420 -197991738 - MIR SINE MIR -2 260 151 411 224 28 101 chr3 20047653 20047719 -197989439 + L1M4 LINE L1 4642 4711 -1435 2231 97 0 0 chr3 20047719 20048019 -197989139 + AluSg SINE Alu 1 300 -10 411 224 28 101 chr3 20048019 20048131 -197989027 + L1M4 LINE L1 4711 4807 -1339 2087 115 0 13 chr3 20048143 20048455 -197988703 + AluSx SINE Alu 5 312 0 2001 93 4 4 chr3 20048691 20048969 -197988189 + AluSq SINE Alu 1 278 -35 369 43 0 0 chr3 20048972 20049019 -197988139 + (CA)n Simple_repeat Simple_repeat 1 47 0 669 103 0 10 chr3 20049020 20049117 -197988041 + AluS SINE Alu 1 96 -216 3414 62 0 0 chr3 20049237 20049673 -197987485 - HUERS-P1 LTR ERV1 -646 5617 5182 366 335 0 0 chr3 20049683 20049793 -197987365 + L1MC4 LINE L1 6614 6703 -1339 * 385 194 0 0 chr3 20049731 20049798 -197987360 - L1MC4 LINE L1 -1339 6703 6637 2199 113 0 0 chr3 20049803 20050105 -197987053 - AluSx SINE Alu -10 302 1 321 321 45 0 chr3 20050110 20050222 -197986936 - MIR SINE MIR -62 146 30 236 236 42 28 chr3 20050213 20050285 -197986873 + MIR SINE MIR 118 190 -72 * 1671 78 9 0 chr3 20050794 20051012 -197986146 - AluSx SINE Alu -92 220 1 328 81 0 3 chr3 20051013 20051071 -197986087 - L1M LINE L1 -734 5428 5372 2111 88 0 7 chr3 20051072 20051368 -197985790 - AluY SINE Alu -17 294 1 330 206 35 136 chr3 20051667 20051828 -197985330 + MIR SINE MIR 18 160 -62 218 254 162 0 chr3 20052626 20052719 -197984439 - MIR SINE MIR -69 139 31 1132 180 76 0 chr3 20052946 20053196 -197983962 - L1M3 LINE L1 -359 5824 5556 2207 69 6 47 chr3 20053197 20053515 -197983643 - AluSp SINE Alu -8 305 1 724 183 58 47 chr3 20053516 20053707 -197983451 - Charlie1 DNA MER1_type -572 2189 1997 528 128 0 0 chr3 20053726 20053804 -197983354 - AluJo SINE Alu -8 304 227 952 124 85 13 chr3 20053804 20053957 -197983201 - AluJo SINE Alu -148 164 1 1646 144 3 56 chr3 20054021 20054326 -197982832 + AluJo SINE Alu 1 289 -23 2123 95 28 0 chr3 20054346 20054631 -197982527 + AluSc SINE Alu 1 293 -16 459 260 90 0 chr3 20055551 20055751 -197981407 - L1M4 LINE L1 -2085 4061 3844 2123 107 7 3 chr3 20055753 20056053 -197981105 - AluSg SINE Alu -9 301 1 400 288 71 43 chr3 20056085 20056269 -197980889 + L1ME4a LINE L1 5926 6114 -7 2130 101 7 0 chr3 20056341 20056638 -197980520 + AluSx SINE Alu 1 299 -13 295 314 107 0 chr3 20056674 20056833 -197980325 + L2 LINE L2 3111 3286 -27 460 252 61 0 chr3 20056927 20057058 -197980100 + LTR16A1 LTR ERVL 190 328 -129 1314 98 0 0 chr3 20057158 20057331 -197979827 + AluSq SINE Alu 130 302 -11 189 0 0 0 chr3 20057400 20057421 -197979737 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1699 109 134 0 chr3 20057523 20057798 -197979360 - AluSx SINE Alu 0 312 1 2297 92 0 0 chr3 20057803 20058108 -197979050 - AluY SINE Alu -6 305 1 39 0 0 0 chr3 20058170 20058209 -197978949 + AT_rich Low_complexity Low_complexity 1 39 0 1330 142 14 89 chr3 20058234 20058383 -197978775 - AluJo SINE Alu -44 268 109 2035 96 18 3 chr3 20058383 20058665 -197978493 + AluSq SINE Alu 1 286 -27 261 0 0 0 chr3 20058665 20058694 -197978464 + (CCA)n Simple_repeat Simple_repeat 1 29 0 1330 142 14 89 chr3 20058694 20058705 -197978453 - AluJo SINE Alu -202 110 100 2117 99 0 0 chr3 20058705 20058988 -197978170 + AluSg SINE Alu 1 283 -27 1848 88 12 0 chr3 20058988 20059235 -197977923 + AluSq SINE Alu 43 294 -19 1330 142 14 89 chr3 20059235 20059352 -197977806 - AluJo SINE Alu -210 102 9 274 157 14 14 chr3 20060234 20060304 -197976854 + (CA)n Simple_repeat Simple_repeat 1 70 0 232 345 0 0 chr3 20060395 20060492 -197976666 + MIR SINE MIR 63 160 -48 505 276 176 66 chr3 20060514 20060894 -197976264 + Charlie8 DNA MER1_type 25 446 -1971 1398 122 0 0 chr3 20061641 20061838 -197975320 + AluSg/x SINE Alu 79 275 -37 2275 100 0 6 chr3 20062144 20062455 -197974703 + AluY SINE Alu 1 309 -2 837 240 142 79 chr3 20062620 20062979 -197974179 - MLT1H LTR MaLR 0 549 151 3279 108 101 41 chr3 20062979 20063422 -197973736 - MER4A LTR ERV1 -4 596 109 2091 119 0 0 chr3 20063422 20063740 -197973418 + AluSx SINE Alu 1 318 0 3279 108 101 41 chr3 20063740 20063856 -197973302 - MER4A LTR ERV1 -491 109 1 837 240 142 79 chr3 20063856 20063967 -197973191 - MLT1H LTR MaLR -398 151 49 864 167 17 11 chr3 20063967 20064141 -197973017 + L1M3 LINE L1 5411 5585 -598 511 314 11 11 chr3 20064421 20064612 -197972546 - AluY SINE Alu -119 192 2 22 0 0 0 chr3 20064616 20064638 -197972520 + AT_rich Low_complexity Low_complexity 1 22 0 2284 93 0 3 chr3 20064639 20064939 -197972219 + AluSp SINE Alu 1 299 -14 1933 118 14 7 chr3 20064951 20065248 -197971910 + AluSp SINE Alu 1 299 -14 1367 305 68 31 chr3 20065259 20065863 -197971295 - L1ME3A LINE L1 -50 6120 5495 1651 180 0 7 chr3 20065874 20066174 -197970984 - AluJb SINE Alu -14 298 1 4316 218 24 8 chr3 20066206 20067586 -197969572 - L1MB3 LINE L1 -7 6176 4772 320 292 128 9 chr3 20068141 20068294 -197968864 - MIR SINE MIR -63 145 30 245 186 0 0 chr3 20068660 20068703 -197968455 + L2 LINE L2 2715 2757 -557 425 321 53 5 chr3 20068973 20069163 -197967995 + MIR SINE MIR 14 212 -50 213 255 33 0 chr3 20069394 20069462 -197967696 - MIR SINE MIR -65 143 73 430 293 58 10 chr3 20069987 20070195 -197966963 - L2 LINE L2 -260 3053 2836 199 355 153 0 chr3 20070258 20070447 -197966711 - L2 LINE L2 -619 2695 2478 268 265 36 0 chr3 20071200 20071283 -197965875 - HAL1 LINE L1 -1155 1352 1267 364 240 40 34 chr3 20071805 20072032 -197965126 + (CTCA)n Simple_repeat Simple_repeat 1 228 0 340 319 6 6 chr3 20072040 20072206 -197964952 + (CA)n Simple_repeat Simple_repeat 1 166 0 782 161 0 29 chr3 20072922 20073091 -197964067 - FLAM_C SINE Alu 0 165 1 271 336 22 22 chr3 20073625 20073759 -197963399 - MIR SINE MIR -50 212 79 283 359 70 6 chr3 20078216 20078387 -197958771 - MIR SINE MIR -62 146 11 805 169 131 0 chr3 20078708 20078868 -197958290 + MER5A DNA MER1_type 5 185 -4 183 80 0 0 chr3 20079197 20079222 -197957936 + (TTTTC)n Simple_repeat Simple_repeat 3 27 0 782 205 122 0 chr3 20079222 20079378 -197957780 - FAM SINE Alu 0 175 1 224 331 120 23 chr3 20079909 20080084 -197957074 - L3 LINE CR1 -765 812 621 493 231 25 0 chr3 20080218 20080339 -197956819 + L2 LINE L2 3144 3267 -5 1489 201 7 7 chr3 20080667 20080956 -197956202 + AluJb SINE Alu 1 289 -23 2303 70 3 26 chr3 20081318 20081630 -197955528 - AluSc SINE Alu -4 305 1 2301 78 7 0 chr3 20081768 20082064 -197955094 - AluSg SINE Alu -12 298 1 308 197 15 15 chr3 20082191 20082257 -197954901 + MIR SINE MIR 112 177 -85 611 167 0 65 chr3 20082268 20082406 -197954752 + FLAM_A SINE Alu 13 141 -1 219 266 76 0 chr3 20083357 20083436 -197953722 - MIR SINE MIR -75 133 49 2982 153 20 43 chr3 20083478 20084034 -197953124 + L1MB3 LINE L1 5640 6182 -1 655 299 56 23 chr3 20084752 20085056 -197952102 + LTR37A LTR ERV1 34 347 -79 380 250 117 16 chr3 20086458 20086586 -197950572 - MIR3 SINE MIR -49 159 19 247 300 0 0 chr3 20088393 20088453 -197948705 + L2 LINE L2 3228 3287 -26 583 281 24 48 chr3 20089334 20089544 -197947614 - L3 LINE CR1 -2 1575 1371 367 252 27 0 chr3 20090088 20090199 -197946959 + Charlie8 DNA MER1_type 93 206 -2211 4111 234 80 77 chr3 20090253 20091353 -197945805 + L1M4b LINE L1 95 1189 -5666 180 77 0 0 chr3 20091353 20091379 -197945779 + (TG)n Simple_repeat Simple_repeat 2 27 0 4111 234 80 77 chr3 20091379 20091617 -197945541 + L1M4b LINE L1 1189 1425 -5430 452 0 52 0 chr3 20091617 20091675 -197945483 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 4111 234 80 77 chr3 20091675 20091869 -197945289 + L1M4b LINE L1 1425 1627 -5228 2318 68 3 19 chr3 20091869 20092177 -197944981 - AluY SINE Alu -8 303 1 4111 234 80 77 chr3 20092177 20092285 -197944873 + L1M4b LINE L1 1627 1733 -5122 1405 135 27 84 chr3 20092669 20092965 -197944193 - AluJb SINE Alu -21 291 13 817 220 28 16 chr3 20095518 20095700 -197941458 + MER20 DNA MER1_type 30 213 -6 218 254 162 0 chr3 20096193 20096286 -197940872 + MIR SINE MIR 31 139 -69 581 308 28 36 chr3 20096502 20096755 -197940403 + MLT1I LTR MaLR 155 405 -4 312 212 35 136 chr3 20097084 20097245 -197939913 - MIR SINE MIR -62 146 18 2419 74 0 0 chr3 20097544 20097843 -197939315 + AluSg SINE Alu 1 299 -11 190 211 18 53 chr3 20098380 20098437 -197938721 - L2 LINE L2 -21 3251 3197 226 359 167 0 chr3 20098467 20098718 -197938440 + L2 LINE L2 3019 3311 -2 202 331 71 16 chr3 20099163 20099290 -197937868 + MIR SINE MIR 60 193 -69 235 333 0 0 chr3 20099657 20099720 -197937438 + MIR SINE MIR 110 172 -90 281 216 101 65 chr3 20100702 20100841 -197936317 - Charlie8 DNA MER1_type -1914 503 360 297 281 50 62 chr3 20100946 20101106 -197936052 + Charlie8 DNA MER1_type 25 182 -2235 352 311 8 33 chr3 20101267 20101388 -197935770 + MIR SINE MIR 82 199 -27 397 301 88 18 chr3 20101884 20102110 -197935048 + L1ME LINE L1 5520 5761 -360 302 193 0 0 chr3 20102404 20102461 -197934697 + L2 LINE L2 3211 3267 -5 882 193 51 6 chr3 20103416 20103592 -197933566 - MLT1A1 LTR MaLR -180 185 2 866 166 32 6 chr3 20103592 20103747 -197933411 + MLT1A1 LTR MaLR 206 364 -1 362 263 128 13 chr3 20104193 20104349 -197932809 + MIR SINE MIR 77 250 -12 197 347 157 0 chr3 20104381 20104502 -197932656 - MIR SINE MIR -109 153 14 266 317 129 29 chr3 20105259 20105499 -197931659 + L2 LINE L2 3050 3313 0 236 241 12 84 chr3 20105634 20105717 -197931441 - L2 LINE L2 -3 3269 3193 2226 106 3 0 chr3 20105730 20106041 -197931117 + AluSp SINE Alu 2 313 0 453 325 13 0 chr3 20106390 20106541 -197930617 - MIR SINE MIR -1 261 109 2070 124 0 10 chr3 20107314 20107612 -197929546 - AluSx SINE Alu -15 297 3 474 253 19 32 chr3 20107711 20107869 -197929289 - AluSg/x SINE Alu -23 287 132 1776 121 40 4 chr3 20108040 20108312 -197928846 - AluSg SINE Alu -28 282 1 2207 101 7 0 chr3 20108399 20108697 -197928461 - AluSx SINE Alu -12 300 1 739 288 22 18 chr3 20108790 20109064 -197928094 + L1ME LINE L1 5296 5570 -594 1940 139 30 0 chr3 20109079 20109382 -197927776 - AluSq SINE Alu -1 312 1 276 382 7 21 chr3 20109806 20109950 -197927208 - MIR3 SINE MIR -25 183 42 366 252 29 10 chr3 20110264 20110367 -197926791 + MIR SINE MIR 21 125 -83 916 153 32 32 chr3 20110399 20110588 -197926570 + MER53 DNA DNA 1 189 0 490 264 21 14 chr3 20110628 20110768 -197926390 + MIR3 SINE MIR 3 143 -65 1661 130 69 11 chr3 20110834 20111110 -197926048 + AluJb SINE Alu 1 292 -20 260 203 368 15 chr3 20111740 20111873 -197925285 + MLT1K LTR MaLR 387 566 -22 299 250 10 42 chr3 20112643 20112739 -197924419 + MIR SINE MIR 109 201 -61 695 88 0 0 chr3 20112945 20113036 -197924122 - AluS SINE Alu -221 92 2 1089 242 53 22 chr3 20113069 20113126 -197924032 + MER97a DNA MER1_type? 204 258 -636 1690 175 13 10 chr3 20113126 20113434 -197923724 - AluJo SINE Alu -3 309 1 1089 242 53 22 chr3 20113434 20113732 -197923426 + MER97a DNA MER1_type? 258 570 -324 437 234 73 32 chr3 20113744 20113992 -197923166 + MER97c DNA MER1_type? 830 1087 -3 210 128 0 0 chr3 20114241 20114280 -197922878 + (TG)n Simple_repeat Simple_repeat 1 39 0 2120 188 22 71 chr3 20114288 20114780 -197922378 - MLT2B2 LTR ERVL -38 447 3 797 195 19 61 chr3 20115516 20115778 -197921380 + L1MC5 LINE L1 7473 7723 -238 2767 114 24 53 chr3 20115913 20116343 -197920815 + L1MB3 LINE L1 5705 6146 -37 2007 103 0 60 chr3 20116343 20116662 -197920496 + AluSq SINE Alu 1 300 -13 1016 211 0 0 chr3 20116671 20116842 -197920316 + FAM SINE Alu 1 171 -4 2767 114 24 53 chr3 20116842 20116892 -197920266 + L1MB3 LINE L1 6154 6181 -2 498 256 52 6 chr3 20116895 20117067 -197920091 + L1M4 LINE L1 2835 3014 -3132 1388 212 21 153 chr3 20117071 20117496 -197919662 + MLT2B1 LTR ERVL 5 373 -41 1545 180 55 3 chr3 20117526 20117815 -197919343 - MER7A DNA MER2_type -43 303 2 325 93 17 2 chr3 20117815 20117872 -197919286 + MLT2C2 LTR ERVL 415 464 0 320 335 125 45 chr3 20118009 20118233 -197918925 + L3 LINE CR1 1242 1483 -94 1905 142 3 3 chr3 20118311 20118607 -197918551 + AluSq SINE Alu 1 296 -17 733 196 0 8 chr3 20118990 20119123 -197918035 + AluJo/FLAM SINE Alu 2 133 -179 1853 112 0 4 chr3 20119126 20119385 -197917773 + AluSx SINE Alu 1 258 -54 244 315 0 0 chr3 20119402 20119475 -197917683 - L1M2 LINE L1 -754 5537 5465 571 245 0 14 chr3 20120086 20120229 -197916929 - MIR SINE MIR -113 149 9 196 339 48 26 chr3 20120491 20120680 -197916478 + L2 LINE L2 2921 3113 -159 316 230 122 74 chr3 20121047 20121195 -197915963 + MER45C DNA AcHobo 541 695 -258 2941 167 44 34 chr3 20121562 20121708 -197915450 + L1MB3 LINE L1 5465 5608 -575 2238 103 0 3 chr3 20121708 20122010 -197915148 + AluSq SINE Alu 1 301 -12 2941 167 44 34 chr3 20122010 20122312 -197914846 + L1MB3 LINE L1 5608 5925 -258 2371 91 0 0 chr3 20122312 20122619 -197914539 - AluSg SINE Alu -3 307 1 2941 167 44 34 chr3 20122619 20122845 -197914313 + L1MB3 LINE L1 5925 6147 -36 301 86 0 86 chr3 20122838 20122896 -197914262 + L1MA9 LINE L1 5995 6047 -244 * 896 206 6 0 chr3 20123092 20123262 -197913896 - AluJb SINE Alu -5 307 137 1373 148 86 52 chr3 20123705 20123996 -197913162 - AluJo SINE Alu -9 303 3 1708 166 3 13 chr3 20127122 20127423 -197909735 + AluJo SINE Alu 5 302 -10 1997 116 7 3 chr3 20127423 20127717 -197909441 + AluSp SINE Alu 1 295 -18 435 291 83 29 chr3 20129283 20129489 -197907669 + Charlie2a DNA MER1_type 734 927 -1935 1943 106 13 26 chr3 20129489 20129792 -197907366 - AluSq SINE Alu -14 299 1 435 291 83 29 chr3 20129792 20129813 -197907345 + Charlie2a DNA MER1_type 927 945 -1917 2113 81 9 43 chr3 20129813 20130135 -197907023 - AluY SINE Alu 0 311 1 435 291 83 29 chr3 20130135 20130147 -197907011 + Charlie2a DNA MER1_type 945 987 -1875 340 121 229 12 chr3 20130212 20130295 -197906863 - AluSc SINE Alu 0 299 199 300 311 72 31 chr3 20130445 20130638 -197906520 + L1MC4a LINE L1 5793 5993 -1815 1561 164 53 27 chr3 20132782 20133081 -197904077 + AluJo SINE Alu 1 307 -5 222 346 24 44 chr3 20133535 20133740 -197903418 + L2 LINE L2 2921 3121 -151 316 230 122 74 chr3 20134092 20134240 -197902918 + MER45C DNA AcHobo 541 695 -258 267 246 16 0 chr3 20134238 20134299 -197902859 + MER45C DNA AcHobo 892 953 0 * 273 194 65 0 chr3 20134600 20134662 -197902496 - MIR SINE MIR -73 189 124 378 275 37 0 chr3 20135051 20135160 -197901998 + L3 LINE CR1 1356 1468 -109 358 353 46 7 chr3 20136211 20136387 -197900771 + MIR SINE MIR 3 183 -72 180 194 224 15 chr3 20136794 20136861 -197900297 + L3 LINE CR1 1171 1251 -326 258 396 58 7 chr3 20137026 20137180 -197899978 - MIR SINE MIR -53 209 48 232 256 141 33 chr3 20137190 20137311 -197899847 - MER3 DNA MER1_type 0 209 76 831 326 83 12 chr3 20137539 20137962 -197899196 - L1MC4 LINE L1 -155 7887 7435 349 317 29 18 chr3 20138236 20138444 -197898714 + MIR SINE MIR 22 230 -32 186 325 125 8 chr3 20139048 20139168 -197897990 + MER5A DNA MER1_type 34 167 -22 2171 102 0 3 chr3 20139873 20140177 -197896981 + AluSx SINE Alu 1 303 -9 251 289 93 0 chr3 20140647 20140744 -197896414 + L1MD3 LINE L1 7672 7777 -218 310 145 0 32 chr3 20140746 20140808 -197896350 + L1MC2 LINE L1 6272 6331 -13 1565 181 13 26 chr3 20140810 20141119 -197896039 + AluJo SINE Alu 2 306 -6 1156 280 34 9 chr3 20141630 20141955 -197895203 - L1MC1 LINE L1 -1 6332 6000 1709 164 27 65 chr3 20142077 20142444 -197894714 - MLT1A1 LTR MaLR -1 364 12 236 299 134 0 chr3 20143420 20143517 -197893641 - MIR3 SINE MIR -17 191 82 1263 225 101 52 chr3 20143957 20144517 -197892641 + MLT2B2 LTR ERVL 1 517 -3 395 256 214 6 chr3 20144565 20144733 -197892425 - MIR SINE MIR -28 234 32 262 297 20 0 chr3 20144935 20145036 -197892122 - MER113 DNA MER1_type? -405 116 14 427 273 0 0 chr3 20145909 20146008 -197891150 + MIR SINE MIR 63 161 -101 364 220 187 0 chr3 20146114 20146235 -197890923 + FRAM/FAM SINE Alu 1 84 -82 449 333 109 25 chr3 20146684 20146969 -197890189 - L2 LINE L2 0 3313 3005 1193 241 71 38 chr3 20147010 20147403 -197889755 - L1M4 LINE L1 -2236 3910 3501 2069 134 0 0 chr3 20147403 20147701 -197889457 + AluSg SINE Alu 1 298 -12 1193 241 71 38 chr3 20147701 20147731 -197889427 - L1M4 LINE L1 -2645 3501 3473 1070 243 14 25 chr3 20148110 20148386 -197888772 + MLT1A1 LTR MaLR 1 273 -92 193 351 136 7 chr3 20148385 20148539 -197888619 - MIR SINE MIR -12 250 77 * 575 149 0 11 chr3 20148737 20148831 -197888327 - AluSg/x SINE Alu -16 294 202 3430 45 6 57 chr3 20148931 20148972 -197888186 + HUERS-P1 LTR ERV1 5798 5840 -423 2058 128 3 0 chr3 20148972 20149256 -197887902 + AluSx SINE Alu 1 288 -24 210 37 0 0 chr3 20149256 20149283 -197887875 + (CA)n Simple_repeat Simple_repeat 2 28 0 2058 128 3 0 chr3 20149283 20149294 -197887864 + AluSx SINE Alu 288 297 -15 3430 45 6 57 chr3 20149294 20149743 -197887415 + HUERS-P1 LTR ERV1 5840 6263 0 2165 42 76 0 chr3 20149743 20150031 -197887127 + LTR8 LTR ERV1 1 310 -381 441 246 18 0 chr3 20150174 20150284 -197886874 - L2 LINE L2 -17 3255 3144 204 329 123 24 chr3 20150418 20150588 -197886570 + L3 LINE CR1 621 807 -770 1723 108 8 0 chr3 20151272 20151512 -197885646 - AluSx SINE Alu -70 242 1 328 81 0 3 chr3 20151513 20151571 -197885587 - L1M LINE L1 -736 5428 5372 1285 102 77 0 chr3 20151572 20151731 -197885427 - AluY SINE Alu -17 294 116 342 0 0 0 chr3 20151731 20151769 -197885389 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 1285 102 77 0 chr3 20151769 20151805 -197885353 - AluY SINE Alu -195 116 84 430 192 26 105 chr3 20151806 20151860 -197885298 - L1M LINE L1 -799 5347 5290 1555 183 3 29 chr3 20151860 20152166 -197884992 - AluJb SINE Alu -2 310 13 430 192 26 105 chr3 20152166 20152290 -197884868 - L1M LINE L1 -856 5290 5209 495 245 22 28 chr3 20152399 20152556 -197884602 - L1MC4 LINE L1 -317 7587 7311 304 335 29 18 chr3 20152827 20153035 -197884123 + MIR SINE MIR 22 230 -32 293 250 0 0 chr3 20153686 20153750 -197883408 + AluS SINE Alu 226 289 -12 248 0 0 30 chr3 20153757 20153790 -197883368 + (CAA)n Simple_repeat Simple_repeat 2 33 0 403 356 120 5 chr3 20155166 20155382 -197881776 + MIR SINE MIR 16 256 -6 2090 124 0 0 chr3 20156273 20156571 -197880587 + AluSx SINE Alu 1 298 -14 1935 94 0 0 chr3 20156571 20156827 -197880331 + AluY SINE Alu 41 296 -15 1458 104 0 5 chr3 20156827 20157028 -197880130 + AluSg SINE Alu 2 201 -109 2462 57 0 10 chr3 20157028 20157342 -197879816 + AluY SINE Alu 1 311 0 418 221 24 24 chr3 20157478 20157605 -197879553 + L1MB3 LINE L1 5941 6067 -116 1405 135 27 84 chr3 20157753 20158049 -197879109 - AluJb SINE Alu -21 291 13 246 219 14 41 chr3 20159227 20159300 -197877858 - MER66A LTR ERV1 -379 99 29 368 221 117 45 chr3 20159316 20159470 -197877688 - L1ME LINE L1 -463 5701 5537 586 112 0 34 chr3 20159472 20159561 -197877597 + AluJ/FLAM SINE Alu 2 87 -225 822 204 79 5 chr3 20159562 20159778 -197877380 - L1ME LINE L1 -616 5548 5317 1662 135 0 121 chr3 20159781 20159985 -197877173 - AluJb SINE Alu -2 300 152 1925 127 14 3 chr3 20159985 20160277 -197876881 - AluSq SINE Alu -18 295 1 1662 135 0 121 chr3 20160277 20160412 -197876746 - AluJb SINE Alu -150 152 2 727 156 75 6 chr3 20160469 20160658 -197876500 - AluSp SINE Alu 0 318 119 262 315 94 7 chr3 20160940 20161089 -197876069 + LTR33A LTR ERVL 1 162 -361 277 246 0 0 chr3 20161295 20161352 -197875806 + LTR33A LTR ERVL 467 523 0 22 35 0 0 chr3 20161428 20161457 -197875701 + AT_rich Low_complexity Low_complexity 1 29 0 1437 159 82 0 chr3 20161613 20161858 -197875300 - AluJo SINE Alu -45 267 3 2643 161 4 28 chr3 20161862 20162370 -197874788 - L1M4 LINE L1 -362 5822 5327 1565 165 7 21 chr3 20162372 20162663 -197874495 - AluSx SINE Alu -13 299 13 351 320 115 0 chr3 20164301 20164457 -197872701 + MIR3 SINE MIR 24 197 -11 343 323 62 12 chr3 20166314 20166475 -197870683 - L3 LINE CR1 -529 1048 880 186 263 0 0 chr3 20166492 20166530 -197870628 + MIR SINE MIR 210 247 -15 283 368 61 36 chr3 20167578 20167855 -197869303 + L3 LINE CR1 1161 1444 -133 282 306 61 0 chr3 20168592 20168690 -197868468 + MER5A DNA MER1_type 1 104 -85 257 311 130 17 chr3 20169230 20169407 -197867751 - L3 LINE CR1 -50 1527 1331 186 291 73 0 chr3 20170358 20170413 -197866745 + L2 LINE L2 3250 3308 -5 731 136 0 0 chr3 20172018 20172128 -197865030 - FRAM SINE Alu -4 172 63 189 0 81 27 chr3 20172510 20172547 -197864611 + A-rich Low_complexity Low_complexity 2 40 0 303 308 58 36 chr3 20172571 20172795 -197864363 + L2 LINE L2 2709 2937 -377 380 250 117 16 chr3 20173257 20173385 -197863773 - MIR3 SINE MIR -49 159 19 225 316 61 0 chr3 20174703 20174817 -197862341 + L1MC5 LINE L1 7714 7834 -127 1672 165 16 13 chr3 20174921 20175042 -197862116 + AluJb SINE Alu 1 120 -192 207 0 0 0 chr3 20175042 20175065 -197862093 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1672 165 16 13 chr3 20175065 20175252 -197861906 + AluJb SINE Alu 120 310 -2 773 258 74 37 chr3 20175314 20175721 -197861437 - MER113 DNA MER1_type? -99 422 1 2028 123 13 0 chr3 20176086 20176386 -197860772 - AluSq SINE Alu -9 304 1 1162 185 65 17 chr3 20176514 20176806 -197860352 - L1MD1 LINE L1 -12 6230 5925 26 0 0 0 chr3 20177112 20177138 -197860020 + GC_rich Low_complexity Low_complexity 1 26 0 1536 131 72 56 chr3 20178189 20178353 -197858805 - AluSx SINE Alu -1 311 151 207 0 0 0 chr3 20178353 20178376 -197858782 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1536 131 72 56 chr3 20178376 20178391 -197858767 - AluSx SINE Alu -161 151 138 1474 71 5 5 chr3 20178391 20178587 -197858571 - AluSq SINE Alu -43 270 75 1536 131 72 56 chr3 20178587 20178712 -197858446 - AluSx SINE Alu -174 138 1 1099 91 0 0 chr3 20178713 20178856 -197858302 - AluSq/x SINE Alu -170 143 1 268 352 49 21 chr3 20179875 20180017 -197857141 - MIR3 SINE MIR -33 175 30 226 287 30 10 chr3 20180557 20180658 -197856500 - LTR16A1 LTR ERVL 0 457 355 2119 89 29 0 chr3 20181926 20182207 -197854951 - AluSc SINE Alu -16 293 5 246 337 132 26 chr3 20182221 20182607 -197854551 - L2 LINE L2 -31 3241 2815 240 297 137 33 chr3 20183191 20183294 -197853864 - MER113 DNA MER1_type? -96 425 334 1095 187 21 21 chr3 20183294 20183535 -197853623 - L1MB3 LINE L1 -2 6181 5941 240 297 137 33 chr3 20183535 20183613 -197853545 - MER113 DNA MER1_type? -187 334 225 812 119 0 0 chr3 20183675 20183793 -197853365 - AluY SINE Alu -4 307 190 225 32 32 0 chr3 20183934 20183965 -197853193 + L1MB3 LINE L1 5443 5474 -697 2034 130 0 3 chr3 20183976 20184301 -197852857 - AluSx SINE Alu 0 324 1 4005 132 28 28 chr3 20184342 20184992 -197852166 + L1MB3 LINE L1 5477 6126 -57 1954 114 0 58 chr3 20184992 20185317 -197851841 + AluSq SINE Alu 1 306 -7 969 222 0 0 chr3 20185320 20185491 -197851667 + FAM SINE Alu 1 171 -4 4005 132 28 28 chr3 20185491 20185541 -197851617 + L1MB3 LINE L1 6127 6181 -2 372 291 52 6 chr3 20185544 20185716 -197851442 + L1M4 LINE L1 2835 3014 -3132 484 178 19 9 chr3 20185720 20185827 -197851331 + MLT2B2 LTR ERVL 5 112 -403 228 336 77 0 chr3 20185998 20186102 -197851056 + L1MC/D LINE L1 5800 5911 -1897 2380 71 0 3 chr3 20186339 20186648 -197850510 - AluSc SINE Alu -1 308 1 182 347 93 20 chr3 20186707 20186857 -197850301 + L2 LINE L2 3112 3272 0 258 345 55 12 chr3 20187184 20187349 -197849809 + MIR SINE MIR 69 240 -22 392 252 0 9 chr3 20187839 20187946 -197849212 - L1M4 LINE L1 -1506 4640 4535 2170 100 3 17 chr3 20187950 20188250 -197848908 + AluSp SINE Alu 3 298 -15 5730 136 169 26 chr3 20188260 20189383 -197847775 + pTR5 LTR ERV1 742 2025 -413 420 224 10 0 chr3 20189383 20189481 -197847677 + LTR30 LTR ERV1 544 642 -80 1286 118 0 0 chr3 20189481 20189667 -197847491 + pTR5 LTR ERV1 66 251 -2187 253 275 28 35 chr3 20189769 20189911 -197847247 + MER66B LTR ERV1 305 445 -41 687 250 35 104 chr3 20189929 20189980 -197847178 + L1ME3 LINE L1 5713 5766 -396 2126 99 0 0 chr3 20189980 20190292 -197846866 + AluSg SINE Alu 1 310 0 687 250 35 104 chr3 20190292 20190423 -197846735 + L1ME3 LINE L1 5766 5904 -258 770 180 6 37 chr3 20190423 20190584 -197846574 - FRAM SINE Alu -10 156 1 687 250 35 104 chr3 20190584 20190776 -197846382 + L1ME3 LINE L1 5904 6062 -100 359 267 9 19 chr3 20190933 20191038 -197846120 - MIR SINE MIR -71 191 88 658 216 36 30 chr3 20191343 20191510 -197845648 + LTR38 LTR ERV1 3 170 -386 2057 107 17 0 chr3 20191630 20191921 -197845237 + AluSg SINE Alu 1 296 -14 2493 65 0 0 chr3 20191921 20192230 -197844928 + AluY SINE Alu 1 309 -2 2000 131 0 10 chr3 20192500 20192812 -197844346 + AluY SINE Alu 1 309 -2 894 121 0 0 chr3 20192950 20193074 -197844084 - AluSq/x SINE Alu -189 124 1 2406 72 3 0 chr3 20193085 20193389 -197843769 - AluSp SINE Alu -8 305 1 273 118 0 0 chr3 20193390 20193441 -197843717 - L1M4 LINE L1 -815 5331 5281 225 232 54 0 chr3 20193457 20193513 -197843645 + MIR SINE MIR 186 244 -18 434 271 46 7 chr3 20193516 20193667 -197843491 - MER112 DNA MER1_type -102 158 2 786 251 71 10 chr3 20193735 20194015 -197843143 + MER46C DNA MER2_type 1 298 -40 1147 232 74 20 chr3 20194015 20194352 -197842806 - LTR48B LTR ERV1 0 644 289 1071 74 7 0 chr3 20194352 20194500 -197842658 + MER41B LTR ERV1 1 149 -486 2559 83 6 14 chr3 20194500 20194861 -197842297 - LTR8 LTR ERV1 0 691 334 31 26 0 0 chr3 20195409 20195447 -197841711 + GC_rich Low_complexity Low_complexity 1 38 0 237 221 29 29 chr3 20195598 20195702 -197841456 + C-rich Low_complexity Low_complexity 5 108 0 23 54 0 0 chr3 20195719 20195756 -197841402 + GC_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr3 20195849 20195871 -197841287 + GC_rich Low_complexity Low_complexity 1 22 0 321 310 9 0 chr3 20197364 20197477 -197839681 + MIR SINE MIR 36 149 -113 237 224 0 0 chr3 20198114 20198163 -197838995 + L1M2 LINE L1 5489 5537 -763 1929 105 0 0 chr3 20198180 20198438 -197838720 - AluSx SINE Alu -54 258 1 978 188 96 8 chr3 20198439 20198679 -197838479 - L1MB7 LINE L1 -354 5830 5570 870 194 46 25 chr3 20198922 20199118 -197838040 + MER20 DNA MER1_type 20 219 0 2159 120 0 38 chr3 20199288 20199604 -197837554 + AluSq SINE Alu 1 304 -9 1891 147 38 10 chr3 20200980 20201272 -197835886 + AluSx SINE Alu 1 300 -12 355 197 0 0 chr3 20201372 20201443 -197835715 + AluSg/x SINE Alu 209 279 -21 261 0 0 0 chr3 20201444 20201473 -197835685 + (TA)n Simple_repeat Simple_repeat 1 29 0 2042 119 38 3 chr3 20202047 20202340 -197834818 - AluSg SINE Alu -7 303 1 2338 101 7 0 chr3 20202427 20202725 -197834433 - AluSx SINE Alu -12 300 1 681 288 22 18 chr3 20202818 20203092 -197834066 + L1ME LINE L1 5296 5570 -594 2191 141 0 0 chr3 20203107 20203419 -197833739 - AluSq SINE Alu -1 312 1 1098 161 136 13 chr3 20203495 20203731 -197833427 + LTR48B LTR ERV1 1 265 -379 2632 91 14 0 chr3 20203749 20204110 -197833048 - MER41A LTR ERV1 0 554 189 623 206 6 38 chr3 20254154 20254314 -197782844 - L1MC1 LINE L1 -297 6036 5882 886 268 0 9 chr3 20254322 20254546 -197782612 + AluJb SINE Alu 91 312 0 1858 144 19 2 chr3 20254546 20254945 -197782213 - L1MC1 LINE L1 -745 5401 5186 365 304 65 24 chr3 20254976 20255144 -197782014 + MIR SINE MIR 81 255 -7 245 294 103 24 chr3 20256012 20256138 -197781020 - Charlie8 DNA MER1_type -2261 156 21 2061 210 91 14 chr3 20256758 20257056 -197780102 + L1MC3 LINE L1 7171 7445 -340 726 200 0 22 chr3 20257056 20257191 -197779967 + FLAM_C SINE Alu 2 133 0 2061 210 91 14 chr3 20257191 20257463 -197779695 + L1MC3 LINE L1 7445 7785 0 256 331 22 14 chr3 20258324 20258463 -197778695 + L2 LINE L2 2856 2995 -277 439 314 69 40 chr3 20258500 20258847 -197778311 - HERV16 LTR ERVL -4539 457 101 862 273 69 54 chr3 20258849 20259292 -197777866 + MER77 LTR ERV1 292 709 -3 968 243 47 79 chr3 20259292 20259695 -197777463 + MER77-int LTR ERV1 19 408 -3783 349 284 37 9 chr3 20259701 20259810 -197777348 + MER77-int LTR ERV1 327 438 -3753 7032 252 81 69 chr3 20259853 20260837 -197776321 + MER77-int LTR ERV1 1227 2197 -1994 1707 159 65 0 chr3 20260837 20261127 -197776031 - AluJb SINE Alu -3 309 1 7032 252 81 69 chr3 20261127 20262263 -197774895 + MER77-int LTR ERV1 2197 3317 -874 207 0 0 0 chr3 20262263 20262286 -197774872 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2077 88 0 32 chr3 20262286 20262571 -197774587 - AluSx SINE Alu -36 276 1 7032 252 81 69 chr3 20262571 20263091 -197774067 + MER77-int LTR ERV1 3317 3911 -280 2396 81 3 0 chr3 20263091 20263401 -197773757 - AluSp SINE Alu -2 311 1 7032 252 81 69 chr3 20263401 20263630 -197773528 + MER77-int LTR ERV1 3911 4136 -55 235 133 117 33 chr3 20264031 20264091 -197773067 + MER77 LTR ERV1 204 268 -337 279 229 299 7 chr3 20264173 20264317 -197772841 + MER77 LTR ERV1 416 601 -4 180 299 75 0 chr3 20264588 20264655 -197772503 - MIR SINE MIR -117 145 74 308 247 53 9 chr3 20264991 20265128 -197772030 + Charlie8 DNA MER1_type 133 1378 -1039 282 308 51 0 chr3 20265208 20265325 -197771833 + MER112 DNA MER1_type 98 220 -40 258 283 71 0 chr3 20265326 20265425 -197771733 + MIR SINE MIR 24 129 -79 328 284 11 11 chr3 20266733 20266828 -197770330 + MIR SINE MIR 52 146 -62 209 206 43 11 chr3 20266916 20267008 -197770150 + CT-rich Low_complexity Low_complexity 1 95 0 305 190 0 0 chr3 20267158 20267216 -197769942 + MLT1F1 LTR MaLR 234 291 -251 421 243 7 59 chr3 20267260 20267396 -197769762 + MLT1F1 LTR MaLR 430 558 -9 598 286 101 42 chr3 20268047 20268501 -197768657 + L2 LINE L2 2828 3308 -5 273 29 0 0 chr3 20268799 20268833 -197768325 + (TG)n Simple_repeat Simple_repeat 2 35 0 363 360 79 6 chr3 20269041 20269219 -197767939 - MIR SINE MIR -70 192 2 245 289 52 10 chr3 20269358 20269455 -197767703 - MIR SINE MIR -161 101 1 369 0 0 0 chr3 20270213 20270254 -197766904 + (TG)n Simple_repeat Simple_repeat 2 42 0 374 299 112 0 chr3 20270345 20270452 -197766706 - L2 LINE L2 -14 3299 3181 309 386 45 43 chr3 20272079 20272632 -197764526 - L3 LINE CR1 -2 1575 965 207 254 15 15 chr3 20272980 20273047 -197764111 - MIR SINE MIR -63 145 79 537 273 50 0 chr3 20273158 20273297 -197763861 - MIR SINE MIR -88 174 29 252 310 5 49 chr3 20274468 20274652 -197762506 + GA-rich Low_complexity Low_complexity 5 180 0 547 331 95 21 chr3 20276547 20276789 -197760369 - MIR SINE MIR 0 262 3 437 249 190 51 chr3 20276888 20277241 -197759917 + L2 LINE L2 2870 3271 -1 201 260 0 62 chr3 20277502 20277598 -197759560 + (CGGGG)n Simple_repeat Simple_repeat 5 94 0 1183 282 231 7 chr3 20277920 20278923 -197758235 - L2 LINE L2 0 3313 2036 212 314 58 39 chr3 20279477 20279633 -197757525 - L2 LINE L2 -165 3107 2949 289 323 44 13 chr3 20279912 20280070 -197757088 - MIR3 SINE MIR -39 169 7 248 293 0 0 chr3 20280252 20280310 -197756848 - L3 LINE CR1 -106 1471 1414 779 275 25 21 chr3 20280317 20280553 -197756605 - MIR SINE MIR -10 252 16 197 300 23 32 chr3 20281605 20281713 -197755445 - MIR3 SINE MIR -46 162 54 226 351 61 8 chr3 20281857 20281988 -197755170 - MIR3 SINE MIR -56 152 15 518 241 63 46 chr3 20283930 20284104 -197753054 + MER5A DNA MER1_type 13 189 0 330 278 9 19 chr3 20284749 20284857 -197752301 + GA-rich Low_complexity Low_complexity 5 111 0 230 281 12 24 chr3 20285421 20285503 -197751655 - MIR SINE MIR -117 145 65 839 182 0 11 chr3 20286195 20286371 -197750787 + (TGGA)n Simple_repeat Simple_repeat 2 175 0 1089 105 0 0 chr3 20286402 20286564 -197750594 + (TGGA)n Simple_repeat Simple_repeat 2 163 0 903 191 0 0 chr3 20286595 20287005 -197750153 + (TGGA)n Simple_repeat Simple_repeat 1 410 0 201 180 40 20 chr3 20287246 20287296 -197749862 + MIR SINE MIR 77 127 -135 345 266 18 18 chr3 20288305 20288418 -197748740 + MIR SINE MIR 24 136 -72 282 352 84 60 chr3 20288435 20288685 -197748473 - MIR SINE MIR 0 262 7 1047 173 4 0 chr3 20289102 20289618 -197747540 + (TGGA)n Simple_repeat Simple_repeat 1 518 0 372 251 123 57 chr3 20290559 20290770 -197746388 + MLT1J LTR MaLR 229 453 -58 1791 244 91 33 chr3 20290776 20291293 -197745865 + MLT1H LTR MaLR 2 548 -1 303 283 51 43 chr3 20291313 20291451 -197745707 - MIR SINE MIR -16 246 108 2277 68 7 3 chr3 20291457 20291749 -197745409 + AluY SINE Alu 1 293 -18 411 298 140 14 chr3 20291756 20292002 -197745156 + L1MCa LINE L1 1040 3291 -1283 519 212 0 18 chr3 20292252 20292365 -197744793 + MLT1J LTR MaLR 79 189 -322 2924 167 8 14 chr3 20292391 20292883 -197744275 + L1MB3 LINE L1 5692 6180 -3 1567 100 38 128 chr3 20292891 20293240 -197743918 + AluYb8 SINE Alu 1 320 0 907 287 149 12 chr3 20293796 20294306 -197742852 + L2 LINE L2 2737 3309 -4 182 216 29 137 chr3 20294659 20294761 -197742397 - MIR SINE MIR -59 149 59 181 349 75 7 chr3 20294943 20295089 -197742069 + L3 LINE CR1 1207 1362 -215 444 333 44 7 chr3 20295259 20295394 -197741764 + MIR3 SINE MIR 16 155 -53 670 268 155 16 chr3 20296142 20296523 -197740635 + LTR16A1 LTR ERVL 22 455 -2 1969 117 17 82 chr3 20296649 20296852 -197740306 + Tigger2 DNA MER2_type 2334 2549 -169 2234 117 0 0 chr3 20296852 20297160 -197739998 + AluSg SINE Alu 1 308 -2 1969 117 17 82 chr3 20297160 20297185 -197739973 + Tigger2 DNA MER2_type 2549 2574 -144 2186 99 0 3 chr3 20297185 20297479 -197739679 + AluSp SINE Alu 1 293 -20 1969 117 17 82 chr3 20297479 20297661 -197739497 + Tigger2 DNA MER2_type 2574 2718 0 419 355 60 21 chr3 20297696 20297930 -197739228 + L1ME2 LINE L1 5078 5320 -826 1305 146 131 44 chr3 20297939 20298214 -197738944 + AluJb SINE Alu 1 299 -13 381 353 94 63 chr3 20298328 20298849 -197738309 + L1ME2 LINE L1 5537 5919 -243 182 333 18 0 chr3 20299288 20299345 -197737813 + MIR SINE MIR 94 151 -111 7507 40 6 0 chr3 20299514 20300900 -197736258 + L1PA5 LINE L1 4765 6154 0 301 320 92 45 chr3 20300903 20300927 -197736231 + L1M4 LINE L1 4145 4166 -1980 2143 105 3 19 chr3 20300927 20301242 -197735916 + AluSg SINE Alu 1 310 0 301 320 92 45 chr3 20301242 20301935 -197735223 + L1M4 LINE L1 4166 4896 -1250 1355 199 29 0 chr3 20302064 20302336 -197734822 + AluJo SINE Alu 21 300 -12 445 235 101 8 chr3 20302398 20302517 -197734641 + L2 LINE L2 3180 3309 -4 281 352 62 6 chr3 20302709 20302885 -197734273 - L3 LINE CR1 -59 1518 1333 414 195 21 42 chr3 20303114 20303222 -197733936 + L1MA4A LINE L1 6044 6279 -7 2368 82 0 13 chr3 20303222 20303539 -197733619 + AluSq SINE Alu 1 313 0 429 261 34 0 chr3 20304189 20304308 -197732850 + MIR3 SINE MIR 35 157 -51 182 323 194 8 chr3 20304817 20304941 -197732217 + L2 LINE L2 2905 3051 -221 2210 112 3 3 chr3 20305092 20305404 -197731754 - AluSx SINE Alu 0 312 1 2361 80 0 0 chr3 20305770 20306072 -197731086 - AluSx SINE Alu 0 312 11 848 152 0 0 chr3 20306085 20306217 -197730941 - FLAM_C SINE Alu -10 133 2 2210 103 6 3 chr3 20306281 20306593 -197730565 - AluSq SINE Alu 0 313 1 1417 235 162 3 chr3 20306593 20307172 -197729986 - Charlie1 DNA MER1_type -795 1966 1 262 255 41 20 chr3 20307183 20307281 -197729877 + L2 LINE L2 3171 3270 -43 510 313 170 12 chr3 20307423 20307765 -197729393 - L2 LINE L2 -3 3310 2915 330 185 155 55 chr3 20307857 20308057 -197729101 - L2 LINE L2 -100 3213 2994 314 245 78 10 chr3 20308067 20308169 -197728989 - MIR SINE MIR -113 149 41 462 230 20 0 chr3 20308329 20308429 -197728729 - MIR SINE MIR -77 185 84 2291 163 16 69 chr3 20308534 20308598 -197728560 - L1MB7 LINE L1 0 6184 6118 2860 82 3 8 chr3 20308598 20308964 -197728194 + THE1B LTR MaLR 1 364 0 2291 163 16 69 chr3 20308964 20309389 -197727769 - L1MB7 LINE L1 -66 6118 5721 251 278 55 46 chr3 20310226 20310335 -197726823 - MIR3 SINE MIR -51 157 47 478 247 50 21 chr3 20310451 20310646 -197726512 - MIR SINE MIR -15 247 46 431 258 153 59 chr3 20311253 20311678 -197725480 + L2 LINE L2 2632 3101 -212 352 329 75 62 chr3 20311864 20312186 -197724972 + L2 LINE L2 2927 3252 -20 219 377 24 12 chr3 20312204 20312371 -197724787 - MIR SINE MIR -44 218 50 294 280 43 0 chr3 20312480 20312573 -197724585 + MIR SINE MIR 67 163 -99 1842 160 0 0 chr3 20313641 20313951 -197723207 + AluJo SINE Alu 1 310 0 50 18 0 0 chr3 20313951 20314008 -197723150 + AT_rich Low_complexity Low_complexity 1 57 0 1437 172 56 12 chr3 20314008 20314327 -197722831 + L1MB3 LINE L1 5851 6183 0 267 317 24 37 chr3 20314350 20314514 -197722644 + L1MC/D LINE L1 5619 5780 -341 1141 173 9 9 chr3 20314516 20314730 -197722428 + AluJb SINE Alu 83 296 -16 241 279 86 36 chr3 20314733 20314873 -197722285 + L1MC/D LINE L1 5776 5922 -1886 255 331 30 24 chr3 20315752 20315918 -197721240 - MIR SINE MIR -78 184 18 199 255 0 0 chr3 20316272 20316319 -197720839 - MIR SINE MIR -72 136 90 202 240 0 125 chr3 20317088 20317140 -197720018 - MIR SINE MIR -69 193 157 2347 90 0 0 chr3 20317140 20317439 -197719719 - AluSg SINE Alu -11 299 1 202 240 0 125 chr3 20317439 20317482 -197719676 - MIR SINE MIR -105 157 110 1205 186 237 17 chr3 20317712 20318062 -197719096 + MLT1H LTR MaLR 64 490 -59 2334 256 33 17 chr3 20318075 20318547 -197718611 + L1M4 LINE L1 4335 4825 -1321 2157 106 10 10 chr3 20318547 20318859 -197718299 + AluSq SINE Alu 1 312 -1 2334 256 33 17 chr3 20318859 20319148 -197718010 + L1M4 LINE L1 4825 5108 -1038 537 201 67 0 chr3 20319146 20319280 -197717878 + L1ME3 LINE L1 4686 4828 -1318 * 804 115 0 0 chr3 20319285 20319398 -197717760 + AluSq/x SINE Alu 1 113 -200 1687 257 97 19 chr3 20319520 20320243 -197716915 + L1ME3 LINE L1 5170 5951 -211 2121 122 0 0 chr3 20320247 20320543 -197716615 + AluSx SINE Alu 1 296 -16 850 147 0 0 chr3 20320564 20320700 -197716458 + FLAM_C SINE Alu 1 136 -7 642 274 33 9 chr3 20320702 20320917 -197716241 + L1ME3 LINE L1 5941 6160 -2 311 331 41 58 chr3 20320988 20321230 -197715928 + L1MC4 LINE L1 7596 7833 -209 1723 167 10 3 chr3 20322468 20322773 -197714385 - Tigger3b DNA MER2_type 0 1231 925 2611 153 91 53 chr3 20322780 20323362 -197713796 - MER4B LTR ERV1 -6 604 1 * 3502 114 42 91 chr3 20323362 20323700 -197713458 - Tigger3b DNA MER2_type -2100 928 575 2163 111 10 0 chr3 20323700 20324007 -197713151 - AluSx SINE Alu -2 310 1 3502 114 42 91 chr3 20324007 20324064 -197713094 - Tigger3b DNA MER2_type -2453 575 517 1851 133 6 41 chr3 20324064 20324380 -197712778 + AluSx SINE Alu 1 305 -7 3502 114 42 91 chr3 20324380 20324391 -197712767 - Tigger3b DNA MER2_type -2511 517 507 2271 95 0 0 chr3 20324391 20324697 -197712461 + AluSg SINE Alu 2 307 -3 3502 114 42 91 chr3 20324697 20325050 -197712108 - Tigger3b DNA MER2_type -2521 507 205 1078 116 0 52 chr3 20325054 20325250 -197711908 - AluSp SINE Alu 0 310 124 707 168 162 52 chr3 20325250 20325423 -197711735 - Tigger3b DNA MER2_type -1039 192 1 264 313 12 0 chr3 20325920 20326003 -197711155 + L2 LINE L2 2240 2323 -991 328 284 11 0 chr3 20326647 20326742 -197710416 + Charlie8 DNA MER1_type 63 158 -2259 300 211 0 0 chr3 20327122 20327179 -197709979 - Tigger3b DNA MER2_type -1173 58 2 538 309 28 11 chr3 20327475 20327653 -197709505 + MIR SINE MIR 70 250 -12 447 244 69 15 chr3 20328124 20328255 -197708903 - MIR SINE MIR -66 196 59 456 302 27 7 chr3 20328804 20328953 -197708205 - MIR SINE MIR -87 175 24 359 204 45 11 chr3 20329252 20329340 -197707818 + MLT1H LTR MaLR 116 206 -343 528 267 59 7 chr3 20329804 20329939 -197707219 + MLT1H LTR MaLR 209 350 -199 451 225 139 43 chr3 20330318 20330505 -197706653 + L2 LINE L2 3108 3312 -1 261 311 25 0 chr3 20330721 20330840 -197706318 + L1ME3A LINE L1 5729 5850 -314 539 235 162 11 chr3 20330843 20331022 -197706136 + L1ME3A LINE L1 5916 6121 -49 575 333 13 10 chr3 20331087 20331349 -197705809 + L1MC4a LINE L1 5666 5817 -345 1021 209 26 17 chr3 20331387 20331617 -197705541 + Charlie1 DNA MER1_type 1 232 -2529 3364 197 57 27 chr3 20331624 20331806 -197705352 + L1MB7 LINE L1 5382 5557 -627 2259 98 0 0 chr3 20331806 20332102 -197705056 - AluSp SINE Alu -17 296 1 3364 197 57 27 chr3 20332102 20332689 -197704469 + L1MB7 LINE L1 5557 6174 -10 776 231 174 22 chr3 20333290 20333635 -197703523 + L2 LINE L2 2684 2975 -338 2326 63 0 17 chr3 20333635 20333936 -197703222 - AluSx SINE Alu -11 301 6 776 231 174 22 chr3 20333936 20334139 -197703019 + L2 LINE L2 2975 3313 0 195 147 0 0 chr3 20334272 20334306 -197702852 + L2 LINE L2 3016 3049 -223 381 245 71 20 chr3 20335652 20335750 -197701408 + MIR SINE MIR 112 214 -48 242 244 185 67 chr3 20335824 20335959 -197701199 - L2 LINE L2 -9 3263 3113 227 362 161 0 chr3 20336768 20336917 -197700241 - MIR SINE MIR -34 228 56 2099 92 34 0 chr3 20336960 20337255 -197699903 - AluSq SINE Alu -8 305 1 451 313 50 72 chr3 20337274 20337690 -197699468 - L2 LINE L2 -24 3248 2842 200 297 53 42 chr3 20338356 20338503 -197698655 + MIR SINE MIR 5 141 -67 366 243 47 47 chr3 20338700 20338848 -197698310 + Charlie8 DNA MER1_type 73 220 -2197 210 143 0 0 chr3 20339656 20339691 -197697467 + (TCC)n Simple_repeat Simple_repeat 2 36 0 250 336 30 71 chr3 20341946 20342214 -197694944 - L2 LINE L2 -26 3287 3031 309 262 168 16 chr3 20342470 20342661 -197694497 - L2 LINE L2 -731 2583 2364 1579 184 36 0 chr3 20342898 20343176 -197693982 - AluJo SINE Alu -11 301 14 1089 174 14 33 chr3 20343287 20343557 -197693601 + AluSq SINE Alu 18 283 -26 303 28 0 0 chr3 20343557 20343593 -197693565 + (CA)n Simple_repeat Simple_repeat 1 36 0 1927 112 34 7 chr3 20343601 20343896 -197693262 + AluSq SINE Alu 1 303 -10 3764 164 39 70 chr3 20343897 20344015 -197693143 - L1MB2 LINE L1 -29 6142 6022 2224 109 3 0 chr3 20344015 20344326 -197692832 - AluSx SINE Alu 0 312 1 3764 164 39 70 chr3 20344326 20344971 -197692187 - L1MB2 LINE L1 -149 6022 5436 1904 127 0 40 chr3 20344971 20345295 -197691863 - AluSx SINE Alu -1 311 1 3764 164 39 70 chr3 20345295 20345727 -197691431 - L1MB2 LINE L1 -735 5436 4992 605 253 157 64 chr3 20346535 20346943 -197690215 + LTR33A LTR ERVL 77 522 -1 1822 119 72 0 chr3 20346973 20347251 -197689907 - AluSx SINE Alu -14 298 1 298 375 7 21 chr3 20347674 20347818 -197689340 - MIR3 SINE MIR -25 183 42 363 252 29 10 chr3 20348132 20348235 -197688923 + MIR SINE MIR 21 125 -83 916 153 32 32 chr3 20348267 20348456 -197688702 + MER53 DNA DNA 1 189 0 490 264 21 14 chr3 20348496 20348636 -197688522 + MIR3 SINE MIR 3 143 -65 1661 130 69 11 chr3 20348702 20348978 -197688180 + AluJb SINE Alu 1 292 -20 260 203 368 15 chr3 20349608 20349741 -197687417 + MLT1K LTR MaLR 387 566 -22 279 271 10 42 chr3 20350511 20350607 -197686551 + MIR SINE MIR 109 201 -61 2018 119 7 0 chr3 20350704 20350997 -197686161 - AluSp SINE Alu -18 295 1 1815 168 3 16 chr3 20350997 20351300 -197685858 - AluJo SINE Alu -11 301 3 1447 155 86 52 chr3 20354422 20354713 -197682445 + AluJo SINE Alu 3 303 -9 960 206 6 0 chr3 20355156 20355326 -197681832 + AluJb SINE Alu 137 307 -5 238 138 17 0 chr3 20355459 20355517 -197681641 - L1MB3 LINE L1 0 6183 6125 304 81 0 86 chr3 20355522 20355580 -197681578 - L1MA9 LINE L1 -244 6047 5995 3394 154 42 32 chr3 20355587 20355799 -197681359 - L1MB3 LINE L1 -50 6133 5925 2575 82 0 0 chr3 20355799 20356105 -197681053 + AluSg SINE Alu 1 306 -4 3394 154 42 32 chr3 20356105 20356407 -197680751 - L1MB3 LINE L1 -258 5925 5608 2232 102 24 0 chr3 20356407 20356701 -197680457 - AluSq SINE Alu -12 301 1 3394 154 42 32 chr3 20356701 20356901 -197680257 - L1MB3 LINE L1 -575 5608 5411 808 223 153 89 chr3 20356901 20357012 -197680146 + MLT1H LTR MaLR 49 151 -398 3003 108 101 41 chr3 20357012 20357128 -197680030 + MER4A LTR ERV1 1 109 -491 2221 119 0 0 chr3 20357128 20357446 -197679712 - AluSx SINE Alu 0 318 1 3003 108 101 41 chr3 20357446 20357889 -197679269 + MER4A LTR ERV1 109 596 -4 808 223 153 89 chr3 20357889 20358248 -197678910 + MLT1H LTR MaLR 151 549 0 2499 87 0 6 chr3 20358415 20358726 -197678432 - AluY SINE Alu -2 309 1 2652 59 0 0 chr3 20358998 20359304 -197677854 - AluY SINE Alu -5 306 1 2176 107 17 0 chr3 20359304 20359594 -197677564 - AluSg SINE Alu -15 295 1 651 216 36 30 chr3 20359714 20359881 -197677277 - LTR38 LTR ERV1 -386 170 3 355 258 39 77 chr3 20360187 20360369 -197676789 + MIR SINE MIR 88 262 0 930 209 35 99 chr3 20360449 20360640 -197676518 - L1ME3 LINE L1 -100 6062 5860 785 173 0 37 chr3 20360640 20360802 -197676356 + FRAM SINE Alu 1 156 -10 930 209 35 99 chr3 20360802 20360931 -197676227 - L1ME3 LINE L1 -302 5860 5766 2247 89 0 0 chr3 20360931 20361245 -197675913 - AluSg SINE Alu 0 314 1 930 209 35 99 chr3 20361245 20361296 -197675862 - L1ME3 LINE L1 -396 5766 5713 1409 236 17 19 chr3 20361313 20361724 -197675434 - MER66A LTR ERV1 -40 438 29 400 243 130 8 chr3 20361749 20361893 -197675265 - L1ME3 LINE L1 -483 5681 5537 554 112 0 34 chr3 20361895 20361984 -197675174 + AluS SINE Alu 2 87 -226 820 204 79 5 chr3 20361985 20362201 -197674957 - L1ME3 LINE L1 -616 5548 5317 1571 136 0 118 chr3 20362204 20362407 -197674751 - AluJb SINE Alu -2 300 151 2119 116 14 3 chr3 20362407 20362699 -197674459 - AluSq SINE Alu -18 295 1 1571 136 0 118 chr3 20362699 20362834 -197674324 - AluJb SINE Alu -151 151 2 1492 213 133 75 chr3 20362836 20362898 -197674260 - L1ME LINE L1 -689 5477 5420 2398 100 6 0 chr3 20362898 20363209 -197673949 - AluSq SINE Alu 0 313 1 1492 213 133 75 chr3 20363209 20363269 -197673889 - L1ME LINE L1 -746 5420 5365 1474 82 77 0 chr3 20363269 20363428 -197673730 - AluY SINE Alu -17 294 116 612 0 0 0 chr3 20363428 20363496 -197673662 + (TTTTA)n Simple_repeat Simple_repeat 2 69 0 1474 82 77 0 chr3 20363496 20363532 -197673626 - AluY SINE Alu -195 116 84 1492 213 133 75 chr3 20363532 20363587 -197673571 - L1ME LINE L1 -801 5365 5315 1660 183 3 29 chr3 20363587 20363893 -197673265 - AluJb SINE Alu -2 310 13 1492 213 133 75 chr3 20363893 20364121 -197673037 - L1ME LINE L1 -851 5315 5102 2093 105 0 41 chr3 20364121 20364455 -197672703 + AluSx SINE Alu 1 312 0 1492 213 133 75 chr3 20364455 20364693 -197672465 - L1ME LINE L1 -1064 5102 4879 1803 132 0 0 chr3 20364693 20364943 -197672215 - AluSq SINE Alu 0 313 64 1492 213 133 75 chr3 20364943 20365021 -197672137 - L1ME LINE L1 -1287 4879 4807 1900 151 13 10 chr3 20365021 20365319 -197671839 + AluJb SINE Alu 1 299 -13 1492 213 133 75 chr3 20365319 20365432 -197671726 - L1ME LINE L1 -1359 4807 4535 2308 100 3 17 chr3 20365436 20365736 -197671422 + AluSp SINE Alu 3 298 -15 4096 125 19 126 chr3 20365746 20367293 -197669865 + pTR5 LTR ERV1 742 2606 0 2776 234 60 65 chr3 20367294 20367343 -197669815 - L1ME LINE L1 -1613 4533 4485 2431 85 0 16 chr3 20367343 20367659 -197669499 + AluY SINE Alu 1 311 0 2776 234 60 65 chr3 20367659 20368273 -197668885 - L1ME LINE L1 -1661 4485 3869 2270 123 7 0 chr3 20368273 20368575 -197668583 - AluSx SINE Alu -8 304 1 2776 234 60 65 chr3 20368575 20368644 -197668514 - L1ME LINE L1 -2277 3869 3801 2311 114 0 0 chr3 20368644 20368943 -197668215 - AluSx SINE Alu -13 299 1 2776 234 60 65 chr3 20368943 20369104 -197668054 - L1ME LINE L1 -2345 3801 3641 812 165 0 0 chr3 20369104 20369237 -197667921 + FLAM_A SINE Alu 1 133 0 2776 234 60 65 chr3 20369237 20369455 -197667703 - L1ME LINE L1 -2505 3641 3424 2451 70 0 10 chr3 20369455 20369756 -197667402 - AluY SINE Alu -13 298 1 2776 234 60 65 chr3 20369756 20369834 -197667324 - L1ME LINE L1 -2722 3424 3347 590 256 38 101 chr3 20369823 20370090 -197667068 + L1M4 LINE L1 2524 2806 -3340 * 3280 68 11 7 chr3 20370090 20370532 -197666626 + MLT2A1 LTR ERVL 1 444 0 590 256 38 101 chr3 20370532 20370565 -197666593 + L1M4 LINE L1 2806 2840 -3306 2176 131 0 10 chr3 20370565 20370902 -197666256 - AluSx SINE Alu 0 312 1 590 256 38 101 chr3 20370902 20370942 -197666216 + L1M4 LINE L1 2840 2881 -3265 3849 123 28 35 chr3 20370942 20371591 -197665567 + L1MB3 LINE L1 5477 6129 -54 2141 103 0 60 chr3 20371591 20371910 -197665248 + AluSq SINE Alu 1 300 -13 948 211 0 0 chr3 20371919 20372090 -197665068 + FAM SINE Alu 1 171 -4 3849 123 28 35 chr3 20372090 20372140 -197665018 + L1MB3 LINE L1 6137 6181 -2 590 256 38 101 chr3 20372140 20372321 -197664837 + L1M4 LINE L1 2881 3014 -3132 1348 207 21 153 chr3 20372325 20372750 -197664408 + MLT2B1 LTR ERVL 5 373 -41 1538 180 55 3 chr3 20372780 20373069 -197664089 - MER7A DNA MER2_type -43 303 2 328 93 17 2 chr3 20373069 20373126 -197664032 + MLT2C2 LTR ERVL 415 464 0 301 328 132 49 chr3 20373283 20373487 -197663671 + L3 LINE CR1 1263 1483 -94 2236 115 3 3 chr3 20373565 20373861 -197663297 + AluSq SINE Alu 1 296 -17 198 71 0 0 chr3 20373898 20373926 -197663232 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 1472 122 14 5 chr3 20374091 20374304 -197662854 - AluSq SINE Alu -29 284 70 1142 220 20 3 chr3 20374480 20374813 -197662345 - L1MC/D LINE L1 -745 5401 5186 246 327 65 24 chr3 20374844 20375012 -197662146 + MIR SINE MIR 81 255 -7 253 294 103 24 chr3 20375881 20376007 -197661151 - Charlie8 DNA MER1_type -2261 156 21 254 235 12 0 chr3 20377664 20377745 -197659413 + (TG)n Simple_repeat Simple_repeat 2 83 0 402 216 43 35 chr3 20378081 20378197 -197658961 - MER103 DNA DNA -19 147 31 357 221 0 0 chr3 20378615 20378683 -197658475 + L1MC4 LINE L1 6636 6703 -1339 336 348 0 0 chr3 20378648 20378737 -197658421 - L1MC4 LINE L1 -1340 6702 6614 * 8222 52 4 25 chr3 20378747 20379403 -197657755 + HUERS-P1 LTR ERV1 5182 5806 -457 2162 130 3 0 chr3 20379403 20379725 -197657433 + AluSx SINE Alu 1 312 0 8222 52 4 25 chr3 20379725 20380174 -197656984 + HUERS-P1 LTR ERV1 5806 6263 0 5105 69 18 7 chr3 20380174 20380858 -197656300 + LTR8 LTR ERV1 1 691 0 1068 74 7 0 chr3 20380858 20381006 -197656152 - MER41B LTR ERV1 -486 149 1 1133 234 69 15 chr3 20381009 20381343 -197655815 + LTR48B LTR ERV1 293 644 0 817 244 71 10 chr3 20381343 20381623 -197655535 - MER46C DNA MER2_type -40 298 1 431 271 46 7 chr3 20381691 20381842 -197655316 + MER112 DNA MER1_type 2 158 -102 246 214 54 0 chr3 20381845 20381901 -197655257 - MIR SINE MIR -18 244 186 2802 148 3 61 chr3 20381917 20381969 -197655189 + L1M4 LINE L1 5281 5334 -850 2524 73 3 0 chr3 20381969 20382272 -197654886 + AluSp SINE Alu 1 304 -9 2802 148 3 61 chr3 20382272 20382283 -197654875 + L1M4 LINE L1 5334 5344 -840 2083 139 0 19 chr3 20382283 20382599 -197654559 + AluSx SINE Alu 1 310 -2 2802 148 3 61 chr3 20382599 20383109 -197654049 + L1M4 LINE L1 5344 5822 -362 1604 150 81 0 chr3 20383111 20383358 -197653800 + AluJo SINE Alu 1 267 -45 22 35 0 0 chr3 20383513 20383542 -197653616 + AT_rich Low_complexity Low_complexity 1 29 0 274 246 0 0 chr3 20383618 20383675 -197653483 - LTR33A LTR ERVL 0 523 467 241 315 94 7 chr3 20383881 20384030 -197653128 - LTR33A LTR ERVL -361 162 1 2163 121 0 3 chr3 20384197 20384502 -197652656 - AluSg1 SINE Alu -5 304 1 381 288 71 43 chr3 20384534 20384718 -197652440 + L1ME4a LINE L1 5926 6114 -7 2405 97 3 0 chr3 20384791 20385102 -197652056 + AluSp SINE Alu 1 312 -1 2239 100 0 19 chr3 20385437 20385747 -197651411 - AluSx SINE Alu -8 304 1 2261 97 10 0 chr3 20386046 20386334 -197650824 - AluSp SINE Alu -22 291 1 1253 246 36 25 chr3 20386355 20386562 -197650596 + MER97c DNA MER1_type? 324 538 -552 2187 115 23 0 chr3 20386562 20386867 -197650291 + AluSp SINE Alu 1 312 -1 1253 246 36 25 chr3 20386867 20387021 -197650137 + MER97c DNA MER1_type? 538 689 -401 211 304 14 0 chr3 20387602 20387671 -197649487 + C-rich Low_complexity Low_complexity 3 72 0 250 318 0 19 chr3 20388066 20388173 -197648985 + CT-rich Low_complexity Low_complexity 4 108 0 347 242 6 0 chr3 20388176 20388354 -197648804 + (TCCA)n Simple_repeat Simple_repeat 2 180 0 344 253 0 20 chr3 20388359 20388458 -197648700 + CT-rich Low_complexity Low_complexity 4 100 0 253 313 130 0 chr3 20388460 20388575 -197648583 - L2 LINE L2 0 3272 3143 307 273 58 36 chr3 20388614 20388753 -197648405 - L2 LINE L2 -237 3035 2894 252 213 33 0 chr3 20389075 20389136 -197648022 + MIR SINE MIR 91 153 -109 295 215 193 44 chr3 20389286 20389421 -197647737 - Charlie8 DNA MER1_type -2180 237 83 3126 125 7 22 chr3 20389646 20390183 -197646975 + L1MB3 LINE L1 5655 6183 0 458 367 75 7 chr3 20390484 20390542 -197646616 - L1M4 LINE L1 -2136 4010 3957 2343 117 3 0 chr3 20390542 20390851 -197646307 - AluSx SINE Alu -2 310 1 458 367 75 7 chr3 20390851 20391097 -197646061 - L1M4 LINE L1 -2189 3957 3685 495 203 93 0 chr3 20392677 20392795 -197644363 - LTR16C LTR ERVL -18 473 345 815 203 14 0 chr3 20392796 20392944 -197644214 + FRAM SINE Alu 1 150 -26 287 306 61 0 chr3 20392948 20393046 -197644112 - LTR16C LTR ERVL -134 357 254 1283 297 58 51 chr3 20393364 20393512 -197643646 - L1ME3A LINE L1 -48 6122 5977 2371 97 0 0 chr3 20393512 20393810 -197643348 - AluSg SINE Alu -12 298 1 1283 297 58 51 chr3 20393810 20394331 -197642827 - L1ME3A LINE L1 -193 5977 5448 227 324 68 10 chr3 20394363 20394468 -197642690 - MIR SINE MIR -66 142 40 291 304 96 9 chr3 20395270 20395385 -197641773 - MIR3 SINE MIR -73 135 11 434 334 14 70 chr3 20395532 20395876 -197641282 - L2 LINE L2 -34 3238 2914 887 263 122 72 chr3 20396110 20396807 -197640351 + L1ME3 LINE L1 5293 6032 -130 249 233 41 14 chr3 20397357 20397430 -197639728 + MLT1K LTR MaLR 152 226 -362 404 266 57 13 chr3 20397522 20397680 -197639478 + MLT1K LTR MaLR 418 582 -6 252 59 0 0 chr3 20397726 20397760 -197639398 + (TG)n Simple_repeat Simple_repeat 1 34 0 346 271 54 42 chr3 20398065 20398231 -197638927 - MIR SINE MIR -18 244 77 389 323 23 0 chr3 20398326 20398456 -197638702 + L2 LINE L2 3134 3266 -6 * 799 244 103 4 chr3 20398454 20398688 -197638470 - MIR SINE MIR 0 262 6 852 254 148 51 chr3 20399966 20400359 -197636799 - LTR16B LTR ERVL -33 431 1 476 177 10 0 chr3 20400998 20401094 -197636064 - AluJ/FRAM SINE Alu 0 312 216 1542 81 49 0 chr3 20401128 20401353 -197635805 - LTR10A LTR ERV1 0 609 326 2101 116 26 26 chr3 20401553 20401864 -197635294 + AluSx SINE Alu 1 311 -1 231 250 0 0 chr3 20401996 20402048 -197635110 - MIR SINE MIR -59 149 98 197 158 26 0 chr3 20402118 20402156 -197635002 + MIR SINE MIR 79 117 -91 413 280 63 14 chr3 20402684 20402827 -197634331 + MIR SINE MIR 113 262 0 827 264 60 37 chr3 20403068 20403450 -197633708 - MLT1K LTR MaLR -32 556 166 234 313 52 0 chr3 20403843 20403958 -197633200 - MLT1J LTR MaLR -292 219 99 677 267 87 42 chr3 20404276 20404564 -197632594 - MER115 DNA AcHobo -331 362 62 388 293 0 64 chr3 20404576 20404716 -197632442 - MER5B DNA MER1_type -2 176 46 212 286 0 0 chr3 20404750 20404799 -197632359 - MER5B DNA MER1_type -129 49 1 535 260 210 5 chr3 20405314 20405514 -197631644 - MIR SINE MIR 0 262 22 628 266 10 69 chr3 20406070 20406123 -197631035 - MIR SINE MIR -2 260 205 2377 139 3 8 chr3 20406123 20406491 -197630667 + MER47A DNA MER2_type 1 366 0 628 266 10 69 chr3 20406491 20406640 -197630518 - MIR SINE MIR -57 205 70 583 268 98 21 chr3 20406681 20406916 -197630242 - L2 LINE L2 -146 3167 2915 257 231 22 45 chr3 20407274 20407408 -197629750 + (CAGAGA)n Simple_repeat Simple_repeat 2 132 0 24 53 0 0 chr3 20407865 20407903 -197629255 + GC_rich Low_complexity Low_complexity 1 38 0 198 71 0 0 chr3 20408029 20408057 -197629101 + (CGGA)n Simple_repeat Simple_repeat 3 30 0 184 229 0 0 chr3 20409516 20409551 -197627607 + MIR SINE MIR 112 146 -62 612 243 108 46 chr3 20409690 20409995 -197627163 + MER102b DNA MER1_type 3 326 -15 227 340 120 40 chr3 20410246 20410446 -197626712 - MIR SINE MIR -34 228 13 653 82 0 0 chr3 20410622 20410707 -197626451 - AluSc SINE Alu -224 85 1 1587 134 25 0 chr3 20410712 20410951 -197626207 - AluJo SINE Alu -12 300 56 572 304 95 3 chr3 20410973 20411256 -197625902 - L2 LINE L2 -548 2766 2458 249 305 57 0 chr3 20411842 20411947 -197625211 - L2 LINE L2 -157 3115 3005 272 274 29 10 chr3 20412231 20412333 -197624825 - MIR SINE MIR -79 129 26 217 301 27 14 chr3 20412942 20413015 -197624143 + MIR SINE MIR 118 191 -71 409 272 20 104 chr3 20413761 20413810 -197623348 + MER113 DNA MER1_type? 75 127 -394 2207 117 3 0 chr3 20413810 20414119 -197623039 - AluSx SINE Alu -2 310 1 409 272 20 104 chr3 20414119 20414310 -197622848 + MER113 DNA MER1_type? 127 288 -233 2443 77 0 0 chr3 20414310 20414620 -197622538 - AluY SINE Alu 0 311 2 409 272 20 104 chr3 20414620 20414676 -197622482 + MER113 DNA MER1_type? 288 347 -174 777 191 60 165 chr3 20415004 20415422 -197621736 - MLT1A2 LTR MaLR 0 374 1 752 236 188 6 chr3 20416239 20416591 -197620567 - MLT1K LTR MaLR -7 581 166 222 321 73 32 chr3 20416637 20416786 -197620372 - MIR SINE MIR -63 145 18 333 245 29 36 chr3 20417082 20417221 -197619937 + (TCTCTG)n Simple_repeat Simple_repeat 4 141 0 755 218 0 0 chr3 20417500 20417679 -197619479 + (CCCA)n Simple_repeat Simple_repeat 2 180 0 584 318 96 21 chr3 20418066 20418450 -197618708 - MLT1K LTR MaLR -7 581 169 878 169 14 0 chr3 20419675 20419823 -197617335 - FRAM SINE Alu -5 171 22 382 373 133 15 chr3 20420294 20420699 -197616459 + L2 LINE L2 2818 3270 -2 403 199 35 99 chr3 20420718 20420859 -197616299 + MIR SINE MIR 38 169 -93 2448 186 35 16 chr3 20421189 20421220 -197615938 - L1MB3 LINE L1 -5 6178 6149 1961 122 31 0 chr3 20421220 20421514 -197615644 - AluSg SINE Alu -7 303 1 2448 186 35 16 chr3 20421514 20421971 -197615187 - L1MB3 LINE L1 -34 6149 5681 391 286 84 28 chr3 20422124 20422514 -197614644 + LTR16A1 LTR ERVL 12 457 0 21 0 0 0 chr3 20423264 20423285 -197613873 + AT_rich Low_complexity Low_complexity 1 21 0 290 291 158 25 chr3 20423325 20423483 -197613675 - MER53 DNA DNA -2 187 9 744 172 0 0 chr3 20424347 20424463 -197612695 + FLAM_C SINE Alu 1 116 -27 245 290 99 56 chr3 20425153 20425315 -197611843 - L3 LINE CR1 -59 1518 1350 429 299 46 23 chr3 20425600 20425774 -197611384 - Charlie8 DNA MER1_type -2236 181 4 1841 140 0 0 chr3 20426253 20426525 -197610633 - AluSx SINE Alu -20 292 21 296 216 54 0 chr3 20426556 20426630 -197610528 - L2 LINE L2 -776 2538 2461 546 269 11 11 chr3 20427076 20427258 -197609900 + L1MC1 LINE L1 5408 5589 -744 1543 130 0 0 chr3 20427259 20427482 -197609676 - AluJb SINE Alu 0 312 90 2732 144 31 14 chr3 20427489 20427933 -197609225 + L1MC1 LINE L1 5882 6333 0 324 316 118 66 chr3 20427962 20428234 -197608924 - L2 LINE L2 -94 3178 2893 259 311 0 0 chr3 20428412 20428515 -197608643 + (CGGGG)n Simple_repeat Simple_repeat 2 104 0 508 260 59 19 chr3 20428558 20428850 -197608308 + Charlie4a DNA MER1_type 25 386 -122 306 271 0 0 chr3 20428897 20429015 -197608143 + (CA)n Simple_repeat Simple_repeat 1 118 0 267 31 0 0 chr3 20429317 20429349 -197607809 + (TG)n Simple_repeat Simple_repeat 2 33 0 334 266 13 0 chr3 20429560 20429639 -197607519 - MIR SINE MIR -107 155 76 206 305 131 4 chr3 20429782 20430027 -197607131 + L2 LINE L2 2721 3021 -251 268 183 100 0 chr3 20430135 20430195 -197606963 + L2 LINE L2 3205 3270 -2 194 358 32 0 chr3 20430949 20431044 -197606114 + MIR SINE MIR 80 177 -85 624 319 109 28 chr3 20431367 20432082 -197605076 + L2 LINE L2 2413 3184 -129 205 229 42 0 chr3 20432151 20432199 -197604959 + MIR SINE MIR 88 137 -71 25 0 0 0 chr3 20433140 20433165 -197603993 + GC_rich Low_complexity Low_complexity 1 25 0 584 266 107 0 chr3 20433743 20433912 -197603246 + MIR SINE MIR 39 225 -37 240 254 30 0 chr3 20434151 20434218 -197602940 + MIR SINE MIR 76 144 -118 248 276 69 26 chr3 20434594 20434710 -197602448 - MIR3 SINE MIR -17 191 71 288 263 233 35 chr3 20435223 20435554 -197601604 - L2 LINE L2 -2 3311 2859 333 297 162 0 chr3 20436097 20436245 -197600913 + MIR SINE MIR 76 247 -15 315 297 79 0 chr3 20436408 20436509 -197600649 - MIR SINE MIR -65 143 35 699 306 64 30 chr3 20537181 20537446 -197499712 + HERV16 LTR ERVL 1229 1502 -3494 1988 132 0 7 chr3 20537467 20537771 -197499387 - AluSx SINE Alu -10 302 1 1171 282 34 8 chr3 20537787 20538142 -197499016 + HERV16 LTR ERVL 2315 2678 -2318 249 324 0 10 chr3 20538252 20538354 -197498804 + AluSp SINE Alu 20 120 -183 270 0 0 0 chr3 20538554 20538584 -197498574 + (TA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr3 20538755 20538777 -197498381 + AT_rich Low_complexity Low_complexity 1 22 0 188 65 0 32 chr3 20538937 20538968 -197498190 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2061 91 11 0 chr3 20538970 20539246 -197497912 - AluSg SINE Alu -31 279 1 295 185 0 0 chr3 20539246 20539300 -197497858 - Alu SINE Alu -4 298 245 671 171 0 9 chr3 20539302 20539413 -197497745 - AluJo/FLAM SINE Alu -201 111 2 311 364 13 46 chr3 20539418 20539500 -197497658 + L2 LINE L2 3122 3198 -74 2209 108 3 0 chr3 20539500 20539805 -197497353 - AluSg SINE Alu -4 306 1 311 364 13 46 chr3 20539805 20539873 -197497285 + L2 LINE L2 3198 3267 -5 23 0 0 0 chr3 20540173 20540196 -197496962 + AT_rich Low_complexity Low_complexity 1 23 0 2153 99 3 7 chr3 20540206 20540509 -197496649 + AluSg SINE Alu 1 302 -8 1677 123 0 0 chr3 20540525 20540769 -197496389 + AluSg SINE Alu 54 297 -13 784 60 10 0 chr3 20540971 20541071 -197496087 - AluSc SINE Alu -207 102 2 830 146 8 0 chr3 20541100 20541230 -197495928 + AluSg SINE Alu 2 132 -178 720 135 10 0 chr3 20541229 20541333 -197495825 - AluJo/FLAM SINE Alu -205 107 3 * 433 175 0 12 chr3 20541340 20541420 -197495738 - L1M4 LINE L1 -1034 5112 5034 2205 97 10 0 chr3 20541422 20541732 -197495426 - AluSq SINE Alu 0 313 1 1116 169 9 35 chr3 20541798 20542029 -197495129 + AluJo SINE Alu 85 309 -3 625 158 0 10 chr3 20542033 20542134 -197495024 + LTR44 LTR ERV1 1 100 -419 1477 138 47 25 chr3 20542135 20542411 -197494747 + AluJb SINE Alu 18 299 -13 625 91 11 0 chr3 20542437 20542525 -197494633 + AluY SINE Alu 215 303 -8 2207 91 3 3 chr3 20542530 20542828 -197494330 - AluSp SINE Alu -15 298 1 1772 122 86 118 chr3 20542848 20543063 -197494095 + LTR44 LTR ERV1 101 321 -198 1302 189 44 37 chr3 20543063 20543194 -197493964 + AluJo SINE Alu 2 131 -171 2226 82 14 0 chr3 20543194 20543487 -197493671 + AluSp SINE Alu 1 297 -16 1302 189 44 37 chr3 20543487 20543651 -197493507 + AluJo SINE Alu 131 299 -3 1984 98 0 73 chr3 20543652 20543806 -197493352 + AluSq SINE Alu 2 123 -190 2034 75 7 4 chr3 20543806 20544084 -197493074 + AluY SINE Alu 21 299 -12 1984 98 0 73 chr3 20544084 20544246 -197492912 + AluSq SINE Alu 123 295 -18 1772 122 86 118 chr3 20544246 20544321 -197492837 + LTR44 LTR ERV1 321 397 -122 1933 68 0 36 chr3 20544321 20544600 -197492558 + AluY SINE Alu 34 302 -9 2049 102 20 7 chr3 20544605 20544900 -197492258 + AluSx SINE Alu 1 299 -13 1772 122 86 118 chr3 20544900 20545033 -197492125 + LTR44 LTR ERV1 401 519 0 1616 157 43 33 chr3 20545177 20545322 -197491836 + AluJb SINE Alu 1 143 -169 2307 72 3 0 chr3 20545322 20545615 -197491543 + AluSg SINE Alu 1 294 -16 1616 157 43 33 chr3 20545615 20545768 -197491390 + AluJb SINE Alu 143 302 -10 304 183 0 0 chr3 20545801 20545861 -197491297 - Alu SINE Alu -2 300 241 422 99 49 12 chr3 20545979 20546060 -197491098 + AluSc SINE Alu 206 289 -20 755 133 8 16 chr3 20546075 20546203 -197490955 + L1MB3 LINE L1 5601 5727 -456 816 157 17 47 chr3 20546210 20546382 -197490776 - LTR37A LTR ERV1 -242 184 18 1810 170 99 7 chr3 20546614 20546995 -197490163 + L1MB3 LINE L1 5738 6145 -57 2120 125 0 0 chr3 20547117 20547428 -197489730 + AluSx SINE Alu 1 311 -1 540 196 93 0 chr3 20547570 20547677 -197489481 + FLAM_C SINE Alu 2 118 -25 2772 159 91 8 chr3 20547718 20548233 -197488925 + MER89 LTR ERV1 2 559 0 2439 55 0 0 chr3 20548704 20548997 -197488161 + AluY SINE Alu 1 293 -18 2142 81 10 0 chr3 20549491 20549788 -197487370 + AluSx SINE Alu 5 304 -8 2102 127 3 7 chr3 20549864 20550172 -197486986 + AluSx SINE Alu 1 307 -5 1692 166 7 10 chr3 20550199 20550507 -197486651 + AluJb SINE Alu 1 307 -5 318 261 0 0 chr3 20550523 20550588 -197486570 + L1MC4a LINE L1 5836 5900 -1908 1793 99 40 33 chr3 20550594 20550897 -197486261 + AluSq SINE Alu 1 305 -8 1057 125 0 27 chr3 20551013 20551197 -197485961 - AluSc SINE Alu -11 298 120 605 191 0 0 chr3 20551344 20551449 -197485709 + FRAM SINE Alu 20 124 -52 662 264 278 0 chr3 20551463 20551736 -197485422 - L2 LINE L2 -613 2701 2353 571 284 61 99 chr3 20551736 20552011 -197485147 - L1MEd LINE L1 -5736 383 99 1423 182 17 4 chr3 20552011 20552247 -197484911 + MER8 DNA MER2_type 1 239 0 1916 139 17 0 chr3 20552249 20552544 -197484614 - AluSx SINE Alu -4 308 9 571 284 61 99 chr3 20552544 20552660 -197484498 - L1MEd LINE L1 -6021 98 4 244 284 302 9 chr3 20552898 20553059 -197484099 - L3 LINE CR1 -3 1574 1461 1726 150 13 13 chr3 20553059 20553366 -197483792 + AluJo SINE Alu 1 307 -5 244 284 302 9 chr3 20553366 20553525 -197483633 - L3 LINE CR1 -116 1461 1160 350 346 15 7 chr3 20555393 20555529 -197481629 + L1MEd LINE L1 561 697 -5422 198 71 0 0 chr3 20555535 20555563 -197481595 + (CA)n Simple_repeat Simple_repeat 2 29 0 2149 112 0 0 chr3 20555848 20556143 -197481015 - AluSx SINE Alu -16 296 2 408 118 0 15 chr3 20556143 20556211 -197480947 + L1MB8 LINE L1 6111 6177 -1 849 186 25 25 chr3 20556243 20556404 -197480754 + FRAM SINE Alu 2 162 -4 807 139 0 31 chr3 20556405 20556534 -197480624 + FLAM_C SINE Alu 2 126 -17 1842 118 14 24 chr3 20556560 20556856 -197480302 + AluSx SINE Alu 2 294 -18 1972 124 0 3 chr3 20556864 20557154 -197480004 + AluSg SINE Alu 1 289 -21 318 290 45 26 chr3 20557155 20557310 -197479848 + L1MEd LINE L1 1029 1186 -4933 233 139 12 139 chr3 20557309 20557395 -197479763 + L1M4 LINE L1 3932 4006 -2140 * 411 239 33 11 chr3 20557419 20557511 -197479647 + MER5A DNA MER1_type 3 96 -93 1941 130 6 32 chr3 20557511 20557827 -197479331 - AluSx SINE Alu -4 308 1 1448 215 13 19 chr3 20558075 20558382 -197478776 + MLT1A1 LTR MaLR 1 305 -60 188 35 35 0 chr3 20558383 20558412 -197478746 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 1726 75 0 0 chr3 20558412 20558626 -197478532 - AluSg/x SINE Alu -33 279 66 681 108 10 10 chr3 20558726 20558828 -197478330 - AluSq/x SINE Alu -210 103 2 244 259 184 70 chr3 20560963 20561065 -197476093 - Charlie7 DNA MER1_type -1923 689 600 2192 103 3 0 chr3 20561065 20561365 -197475793 - AluSx SINE Alu -11 301 1 244 259 184 70 chr3 20561365 20561463 -197475695 - Charlie7 DNA MER1_type -2012 600 466 609 195 58 190 chr3 20561871 20562188 -197474970 + Charlie7 DNA MER1_type 1428 1785 -827 180 0 0 0 chr3 20562188 20562208 -197474950 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 1640 160 7 11 chr3 20562209 20562490 -197474668 - AluJo SINE Alu -32 280 1 609 195 58 190 chr3 20562490 20562586 -197474572 + Charlie7 DNA MER1_type 1784 1788 -824 2242 73 0 10 chr3 20562631 20562934 -197474224 - AluY SINE Alu -11 300 1 1768 93 4 8 chr3 20562940 20563188 -197473970 + AluSp SINE Alu 53 299 -14 254 254 87 8 chr3 20563189 20563315 -197473843 + Charlie7 DNA MER1_type 2429 2564 -48 889 168 13 0 chr3 20563569 20563724 -197473434 - AluSg/x SINE Alu -20 292 136 324 311 49 37 chr3 20563928 20564092 -197473066 + MER5A DNA MER1_type 14 179 -10 2292 91 0 3 chr3 20564649 20564956 -197472202 - AluSp SINE Alu -6 307 2 2007 107 3 35 chr3 20565111 20565421 -197471737 - AluSx SINE Alu -12 300 1 2375 90 3 0 chr3 20565491 20565803 -197471355 - AluSp SINE Alu 0 313 1 607 185 49 90 chr3 20565803 20565993 -197471165 - LTR23-int LTR ERV1 -2673 3590 3394 2048 92 20 26 chr3 20565993 20566296 -197470862 - AluSq SINE Alu -12 301 1 607 185 49 90 chr3 20566296 20566493 -197470665 - LTR23-int LTR ERV1 -2869 3394 1920 2111 108 10 10 chr3 20566642 20566947 -197470211 - AluSx SINE Alu -7 305 1 1564 141 23 59 chr3 20567009 20567314 -197469844 - AluJb SINE Alu -18 294 1 316 197 15 4 chr3 20567376 20567482 -197469676 - LTR23-int LTR ERV1 -3093 1929 1735 1798 154 3 0 chr3 20567577 20567863 -197469295 - AluSx SINE Alu -25 287 1 2157 156 97 0 chr3 20568265 20568655 -197468503 - MSTA LTR MaLR 0 428 1 879 134 49 0 chr3 20568655 20568797 -197468361 - MSTA-int LTR MaLR 0 1651 1503 1487 97 0 0 chr3 20568797 20568992 -197468166 - AluSx SINE Alu -117 195 1 1249 148 29 162 chr3 20569026 20569371 -197467787 + AluJb SINE Alu 4 302 0 2116 101 7 0 chr3 20569377 20569674 -197467484 + AluSq SINE Alu 1 299 -14 257 272 0 0 chr3 20569711 20569792 -197467366 - L1 LINE L1 -2380 3766 3686 815 204 24 0 chr3 20569801 20569968 -197467190 - FRAM SINE Alu -12 164 1 544 180 0 0 chr3 20569968 20570057 -197467101 - L1ME LINE L1 -598 5568 5480 578 113 0 0 chr3 20570057 20570137 -197467021 - AluSg/x SINE Alu -16 294 215 1929 112 14 0 chr3 20570545 20570852 -197466306 - AluSx SINE Alu 0 311 1 1653 180 3 0 chr3 20570900 20571194 -197465964 - AluJo SINE Alu -16 296 2 426 273 88 10 chr3 20571201 20571395 -197465763 - L1ME LINE L1 -298 5823 5615 494 216 0 0 chr3 20571792 20571880 -197465278 + AluJ/FLAM SINE Alu 2 89 -223 333 235 0 59 chr3 20572055 20572157 -197465001 - L1ME LINE L1 -539 5631 5536 416 154 26 0 chr3 20572291 20572369 -197464789 - Charlie5 DNA MER1_type -27 2585 2506 2005 141 0 0 chr3 20572372 20572663 -197464495 - AluSx SINE Alu -21 291 1 1379 195 14 30 chr3 20572663 20572824 -197464334 - AluJo SINE Alu -20 292 137 2038 107 29 0 chr3 20572824 20573105 -197464053 - AluSx SINE Alu -23 289 1 1379 195 14 30 chr3 20573105 20573240 -197463918 - AluJo SINE Alu -175 137 1 1134 129 15 40 chr3 20573287 20573488 -197463670 - AluJo SINE Alu -116 196 1 32 43 0 0 chr3 20573840 20573886 -197463272 + AT_rich Low_complexity Low_complexity 1 46 0 280 371 9 9 chr3 20573977 20574093 -197463065 + MIR SINE MIR 32 147 -115 2277 91 3 3 chr3 20574257 20574564 -197462594 + AluSg SINE Alu 1 307 -3 2194 101 3 0 chr3 20575254 20575561 -197461597 + AluY SINE Alu 1 308 -3 245 108 246 0 chr3 20575671 20575736 -197461422 - Tigger7 DNA MER2_type -142 2445 2365 2122 117 0 16 chr3 20575970 20576287 -197460871 - AluSq SINE Alu -1 312 1 2060 106 3 13 chr3 20576291 20576592 -197460566 - AluSp SINE Alu -15 298 1 1966 108 10 3 chr3 20576791 20577079 -197460079 - AluSp SINE Alu -23 290 1 255 243 271 7 chr3 20577703 20577847 -197459311 - MIR SINE MIR -10 252 71 322 238 133 66 chr3 20577926 20578107 -197459051 - MIR SINE MIR -47 215 23 1323 78 11 0 chr3 20578272 20578452 -197458706 - AluSg/x SINE Alu 0 312 131 2131 99 3 6 chr3 20578453 20578766 -197458392 - AluSx SINE Alu 0 312 1 30 27 0 0 chr3 20579918 20579955 -197457203 + GC_rich Low_complexity Low_complexity 1 37 0 746 146 0 0 chr3 20580443 20580553 -197456605 + AluJb SINE Alu 4 113 -199 27 0 0 0 chr3 20580565 20580592 -197456566 + AT_rich Low_complexity Low_complexity 1 27 0 1741 154 3 16 chr3 20580868 20581174 -197455984 + AluJo SINE Alu 1 302 -10 229 204 0 0 chr3 20581475 20581524 -197455634 + L1MC/D LINE L1 5779 5827 -517 2115 82 4 4 chr3 20581531 20581833 -197455325 + AluSc SINE Alu 1 302 0 2319 57 3 7 chr3 20582113 20582410 -197454748 + AluY SINE Alu 1 296 -15 1061 238 82 27 chr3 20582514 20582926 -197454232 + L1MC4 LINE L1 7608 8042 0 1734 153 24 0 chr3 20582937 20583225 -197453933 + AluJb SINE Alu 4 298 -14 459 192 81 10 chr3 20583431 20583530 -197453628 - MER57A LTR ERV1 -43 360 255 1202 148 148 34 chr3 20584268 20584389 -197452769 + AluJo SINE Alu 2 108 -204 1769 150 28 3 chr3 20584389 20584676 -197452482 + AluJb SINE Alu 1 294 -18 1202 148 148 34 chr3 20584676 20584817 -197452341 + AluJo SINE Alu 108 294 -18 2139 102 10 0 chr3 20584999 20585303 -197451855 + AluSp SINE Alu 5 311 -2 517 244 109 6 chr3 20585314 20585470 -197451688 - MIR SINE MIR -62 200 29 716 179 108 28 chr3 20585470 20585682 -197451476 - Charlie4 DNA MER1_type 0 1961 1733 456 159 0 0 chr3 20585707 20585776 -197451382 + Tigger2 DNA MER2_type 1 69 -2649 * 2286 144 80 12 chr3 20585760 20586183 -197450975 + Tigger2 DNA MER2_type 2267 2718 0 497 153 214 0 chr3 20586193 20586324 -197450834 - Charlie4 DNA MER1_type -1760 201 43 659 203 31 0 chr3 20586398 20586526 -197450632 + FLAM_A SINE Alu 1 132 -1 1721 269 192 25 chr3 20586529 20587096 -197450062 + L2 LINE L2 2137 2608 -705 2010 122 0 0 chr3 20587096 20587390 -197449768 + AluSg SINE Alu 1 294 -16 1721 269 192 25 chr3 20587390 20587703 -197449455 + L2 LINE L2 2608 2867 -446 1911 116 3 35 chr3 20587703 20588013 -197449145 - AluSx SINE Alu -12 300 1 1721 269 192 25 chr3 20588013 20588133 -197449025 + L2 LINE L2 2867 3288 -25 201 361 124 0 chr3 20588176 20588273 -197448885 + L2 LINE L2 3180 3288 -25 553 285 111 19 chr3 20588602 20588831 -197448327 - MIR SINE MIR -21 241 8 230 303 23 68 chr3 20588847 20588979 -197448179 + MIR3 SINE MIR 72 197 -11 1344 200 89 0 chr3 20589057 20589337 -197447821 + AluJo SINE Alu 1 305 -7 791 212 72 1 chr3 20591201 20591417 -197445741 - L1ME LINE L1 -608 5556 5318 1015 185 28 84 chr3 20591420 20591573 -197445585 + MLT1A2 LTR MaLR 5 165 -209 918 108 0 0 chr3 20591573 20591703 -197445455 + L1PB1 LINE L1 6016 6145 -6 1015 185 28 84 chr3 20591703 20591750 -197445408 + MLT1A2 LTR MaLR 165 213 -161 717 174 8 38 chr3 20591750 20591882 -197445276 + AluJo/FLAM SINE Alu 2 129 -173 2321 90 0 3 chr3 20591882 20592193 -197444965 + AluY SINE Alu 1 310 -1 2255 101 0 0 chr3 20592196 20592502 -197444656 + AluSx SINE Alu 1 306 -6 1015 185 28 84 chr3 20592502 20592709 -197444449 + MLT1A2 LTR MaLR 214 372 -2 814 147 10 113 chr3 20592709 20592757 -197444401 - L1M4b LINE L1 -5333 1526 1475 1833 163 7 0 chr3 20592757 20593063 -197444095 + AluSx SINE Alu 1 308 -4 2117 96 10 7 chr3 20593063 20593364 -197443794 + AluSg SINE Alu 1 302 -8 814 147 10 113 chr3 20593364 20593518 -197443640 - L1M4b LINE L1 -5382 1477 1344 1196 54 0 7 chr3 20593520 20593669 -197443489 + AluSg SINE Alu 1 148 -162 198 0 0 0 chr3 20593776 20593798 -197443360 + (T)n Simple_repeat Simple_repeat 1 22 0 736 138 9 0 chr3 20593804 20593941 -197443217 + AluSg/x SINE Alu 177 314 0 2067 130 18 132 chr3 20594036 20594234 -197442924 - LTR23 LTR ERV1 0 437 218 1954 137 10 3 chr3 20594234 20594533 -197442625 + AluSx SINE Alu 1 301 -11 2067 130 18 132 chr3 20594533 20594618 -197442540 - LTR23 LTR ERV1 -219 218 125 1957 126 10 17 chr3 20594618 20594754 -197442404 + AluJb SINE Alu 1 136 -176 1794 114 99 0 chr3 20594754 20595027 -197442131 + AluSx SINE Alu 1 300 -12 1957 126 10 17 chr3 20595027 20595192 -197441966 + AluJb SINE Alu 136 300 -12 2067 130 18 132 chr3 20595192 20595241 -197441917 - LTR23 LTR ERV1 -312 125 72 2230 100 3 3 chr3 20595241 20595550 -197441608 + AluSc SINE Alu 1 309 0 2067 130 18 132 chr3 20595550 20595628 -197441530 - LTR23 LTR ERV1 -365 72 86 1811 161 3 10 chr3 20595628 20595938 -197441220 - AluJb SINE Alu -4 308 1 2067 130 18 132 chr3 20595938 20596016 -197441142 - LTR23 LTR ERV1 -350 87 2 1491 203 7 7 chr3 20596436 20596567 -197440591 + AluJo SINE Alu 1 131 -181 2088 115 6 13 chr3 20596567 20596880 -197440278 + AluY SINE Alu 1 311 0 1491 203 7 7 chr3 20596880 20597039 -197440119 + AluJo SINE Alu 130 291 -21 2037 120 10 3 chr3 20597288 20597587 -197439571 + AluSx SINE Alu 1 301 -11 2039 104 0 0 chr3 20597920 20598198 -197438960 - AluSg SINE Alu -32 278 1 290 248 182 33 chr3 20598268 20598371 -197438787 + MIR SINE MIR 1 126 -136 2042 99 26 10 chr3 20598371 20598674 -197438484 - AluY SINE Alu -3 308 1 290 248 182 33 chr3 20598674 20598691 -197438467 + MIR SINE MIR 126 139 -123 916 108 0 43 chr3 20598996 20599135 -197438023 + FLAM_C SINE Alu 1 133 0 1579 131 55 24 chr3 20599324 20599615 -197437543 + AluJb SINE Alu 1 300 -12 199 241 138 0 chr3 20599743 20599801 -197437357 - MIR3 SINE MIR -5 203 138 824 252 147 22 chr3 20599923 20600068 -197437090 - HAL1 LINE L1 -1606 901 775 873 218 39 0 chr3 20600068 20600247 -197436911 - MER5A DNA MER1_type 0 189 4 824 252 147 22 chr3 20600247 20600517 -197436641 - HAL1 LINE L1 -1731 776 434 238 246 223 40 chr3 20600539 20600714 -197436444 - HAL1 LINE L1 -2159 348 142 562 236 173 11 chr3 20600819 20601010 -197436148 + MIR SINE MIR 25 246 -16 252 0 0 0 chr3 20601010 20601038 -197436120 + (TG)n Simple_repeat Simple_repeat 2 29 0 2069 132 3 0 chr3 20601039 20601342 -197435816 - AluSx SINE Alu -8 304 1 263 288 0 0 chr3 20601368 20601427 -197435731 - HAL1 LINE L1 -2439 68 10 2147 96 7 0 chr3 20601500 20601802 -197435356 + AluSc SINE Alu 1 304 -5 458 246 49 35 chr3 20601821 20601963 -197435195 - MIR3 SINE MIR -50 158 15 777 209 25 12 chr3 20603195 20603358 -197433800 + FRAM SINE Alu 1 165 -1 1108 103 157 0 chr3 20603392 20603577 -197433581 + L1PB4 LINE L1 5941 6154 -2 267 263 85 34 chr3 20603591 20603709 -197433449 - MIR SINE MIR -120 142 19 21 0 0 0 chr3 20604302 20604323 -197432835 + AT_rich Low_complexity Low_complexity 1 21 0 1285 162 19 76 chr3 20604667 20604774 -197432384 + AluJb SINE Alu 2 114 -198 180 0 0 0 chr3 20604774 20604794 -197432364 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1285 162 19 76 chr3 20604794 20605000 -197432158 + AluJb SINE Alu 114 297 -15 696 156 70 70 chr3 20605146 20605332 -197431826 + MER4-int LTR ERV1 3545 3730 -2868 2187 92 10 0 chr3 20605465 20605769 -197431389 - AluSq SINE Alu -6 307 1 207 0 0 0 chr3 20605776 20605799 -197431359 + (T)n Simple_repeat Simple_repeat 1 23 0 544 149 0 106 chr3 20605806 20605947 -197431211 + MER4-int LTR ERV1 3788 3913 -2685 2071 131 0 0 chr3 20605952 20606258 -197430900 + AluSx SINE Alu 6 311 -1 1723 146 0 4 chr3 20606267 20606541 -197430617 + AluJo SINE Alu 1 273 -39 249 33 0 0 chr3 20606560 20606590 -197430568 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1652 171 10 13 chr3 20606621 20606931 -197430227 - AluJo SINE Alu -3 309 1 729 206 80 150 chr3 20606932 20607384 -197429774 + MER4-int LTR ERV1 4091 4515 -1816 280 67 67 22 chr3 20607384 20607429 -197429729 - AluJo SINE Alu -168 134 88 729 206 80 150 chr3 20607429 20607707 -197429451 + MER4-int LTR ERV1 4515 4811 -1520 1036 168 74 5 chr3 20607708 20607911 -197429247 - AluJb SINE Alu -9 303 87 1767 162 3 10 chr3 20607944 20608258 -197428900 + AluJb SINE Alu 1 312 0 1691 167 3 7 chr3 20608473 20608760 -197428398 - AluJb SINE Alu -26 286 1 23 0 0 0 chr3 20608828 20608851 -197428307 + AT_rich Low_complexity Low_complexity 1 23 0 1423 144 125 4 chr3 20608856 20609120 -197428038 + AluSx SINE Alu 2 297 -15 1185 161 3 110 chr3 20609188 20609289 -197427869 + LTR44 LTR ERV1 1 111 -408 2178 145 23 78 chr3 20609289 20609608 -197427550 + L1MA3 LINE L1 5818 6100 -205 1998 124 0 7 chr3 20609608 20609899 -197427259 - AluSx SINE Alu -23 289 1 2178 145 23 78 chr3 20609899 20610095 -197427063 + L1MA3 LINE L1 6100 6305 0 1185 161 3 110 chr3 20610095 20610141 -197427017 + LTR44 LTR ERV1 111 160 -359 1918 142 0 0 chr3 20610141 20610455 -197426703 - AluSx SINE Alu 0 312 1 1185 161 3 110 chr3 20610455 20610597 -197426561 + LTR44 LTR ERV1 160 260 -259 2743 200 132 66 chr3 20610607 20610761 -197426397 - Charlie2a DNA MER1_type -1227 1635 1493 2420 64 0 0 chr3 20610761 20611058 -197426100 - AluSg SINE Alu -13 297 1 2743 200 132 66 chr3 20611058 20611377 -197425781 - Charlie2a DNA MER1_type -1369 1493 1197 1595 193 23 7 chr3 20611377 20611682 -197425476 + AluJb SINE Alu 1 310 -2 2743 200 132 66 chr3 20611682 20611757 -197425401 - Charlie2a DNA MER1_type -1665 1197 1128 2134 111 7 0 chr3 20611757 20612055 -197425103 - AluSg SINE Alu -10 300 1 2743 200 132 66 chr3 20612055 20612653 -197424505 - Charlie2a DNA MER1_type -1734 1128 411 216 0 0 0 chr3 20612659 20612683 -197424475 + (TA)n Simple_repeat Simple_repeat 2 25 0 * 432 0 0 0 chr3 20612682 20612730 -197424428 + (TG)n Simple_repeat Simple_repeat 1 48 0 2305 76 10 0 chr3 20612967 20613269 -197423889 + AluSp SINE Alu 2 306 -7 763 165 9 0 chr3 20613382 20613497 -197423661 + FLAM_C SINE Alu 3 118 -25 33 25 0 0 chr3 20613497 20613537 -197423621 + AT_rich Low_complexity Low_complexity 1 40 0 2023 130 10 0 chr3 20614048 20614347 -197422811 + AluSx SINE Alu 1 302 -10 283 188 104 42 chr3 20615077 20615173 -197421985 - L1ME4a LINE L1 -70 6051 5950 251 283 58 17 chr3 20615314 20615434 -197421724 - L1ME4a LINE L1 -373 5748 5624 976 134 0 0 chr3 20615434 20615576 -197421582 + AluJb SINE Alu 1 142 -170 767 204 79 0 chr3 20615632 20615784 -197421374 + FAM SINE Alu 1 164 -11 1651 164 45 33 chr3 20615794 20616130 -197421028 - MLT1A1 LTR MaLR -25 340 1 462 256 37 104 chr3 20616130 20616318 -197420840 - L1ME4a LINE L1 -136 5985 5836 2145 114 0 0 chr3 20616318 20616608 -197420550 - AluSx SINE Alu -22 290 1 462 256 37 104 chr3 20616608 20616821 -197420337 - L1ME4a LINE L1 -285 5836 5610 1733 173 123 77 chr3 20617002 20617483 -197419675 + MLT1D LTR MaLR 3 505 0 252 0 0 0 chr3 20617566 20617594 -197419564 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2097 195 32 64 chr3 20617997 20618136 -197419022 + MER110 LTR ERV1 3 145 -346 2037 107 0 0 chr3 20618136 20618441 -197418717 + AluSx SINE Alu 1 305 0 2097 195 32 64 chr3 20618441 20618514 -197418644 + MER110 LTR ERV1 145 219 -272 1534 138 119 0 chr3 20618514 20618775 -197418383 + AluJb SINE Alu 6 297 -15 2097 195 32 64 chr3 20618775 20619058 -197418100 + MER110 LTR ERV1 219 484 -7 264 184 0 0 chr3 20619058 20619107 -197418051 - FLAM_A SINE Alu -1 132 84 1241 157 5 37 chr3 20619108 20619325 -197417833 - AluJo SINE Alu -94 218 9 2205 109 0 6 chr3 20619328 20619641 -197417517 - AluSx SINE Alu 0 312 2 2206 98 3 0 chr3 20619792 20620097 -197417061 - AluY SINE Alu -5 306 1 256 293 20 20 chr3 20620100 20620199 -197416959 - L1ME4a LINE L1 -508 5613 5515 894 152 76 149 chr3 20620207 20620301 -197416857 - LTR37A LTR ERV1 0 426 327 2185 110 0 3 chr3 20620301 20620611 -197416547 - AluSx SINE Alu -3 309 1 894 152 76 149 chr3 20620611 20620695 -197416463 - LTR37A LTR ERV1 -99 327 238 738 90 8 37 chr3 20620695 20620829 -197416329 + L1MA4 LINE L1 6171 6300 0 894 152 76 149 chr3 20620829 20621044 -197416114 - LTR37A LTR ERV1 -188 238 61 1096 117 0 23 chr3 20621047 20621218 -197415940 + AluSg/x SINE Alu 137 303 -9 2355 68 0 10 chr3 20621401 20621709 -197415449 + AluSp SINE Alu 1 305 -8 26 50 0 0 chr3 20622013 20622053 -197415105 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr3 20622102 20622125 -197415033 + AT_rich Low_complexity Low_complexity 1 23 0 1917 122 57 3 chr3 20622570 20622866 -197414292 - AluSx SINE Alu 0 312 1 339 340 0 0 chr3 20622880 20622974 -197414184 + (CCCA)n Simple_repeat Simple_repeat 3 96 0 352 183 10 10 chr3 20622987 20623091 -197414067 + (TCCA)n Simple_repeat Simple_repeat 4 107 0 1213 141 8 77 chr3 20623122 20623356 -197413802 + MER20 DNA MER1_type 2 219 0 701 163 16 23 chr3 20623447 20623576 -197413582 - FLAM_C SINE Alu -14 129 2 246 273 0 100 chr3 20623581 20623691 -197413467 + MER5B DNA MER1_type 8 106 -72 2347 93 3 0 chr3 20623771 20624083 -197413075 + AluSp SINE Alu 1 313 0 855 207 35 12 chr3 20624213 20624382 -197412776 - MER5B DNA MER1_type -5 173 1 973 136 28 2 chr3 20624471 20624721 -197412437 - AluSq SINE Alu -6 307 2 263 128 0 0 chr3 20624784 20624831 -197412327 - Alu SINE Alu 0 302 256 1097 82 0 14 chr3 20624836 20624983 -197412175 - AluSq SINE Alu -167 145 1 198 209 0 0 chr3 20625106 20625149 -197412009 + (TG)n Simple_repeat Simple_repeat 2 44 0 224 383 25 8 chr3 20625293 20625413 -197411745 - MIR SINE MIR -67 141 20 28 0 0 0 chr3 20625685 20625713 -197411445 + AT_rich Low_complexity Low_complexity 1 28 0 920 121 0 21 chr3 20625713 20625853 -197411305 + FLAM_C SINE Alu 1 137 -6 217 229 0 0 chr3 20625942 20625990 -197411168 + T-rich Low_complexity Low_complexity 1 48 0 847 173 6 26 chr3 20626046 20626202 -197410956 - AluJo SINE Alu -159 153 1 577 277 117 39 chr3 20626306 20626588 -197410570 - LTR16C LTR ERVL -187 304 1 1737 104 10 78 chr3 20626603 20626912 -197410246 + AluSx SINE Alu 1 288 -24 2090 97 0 53 chr3 20626913 20627234 -197409924 + AluSg SINE Alu 1 304 -6 1091 254 42 17 chr3 20627234 20627559 -197409599 - L2 LINE L2 -282 3031 2696 1755 177 3 0 chr3 20627716 20628027 -197409131 + AluJb SINE Alu 1 312 0 461 278 311 13 chr3 20628043 20628342 -197408816 - L1ME4a LINE L1 -6 6115 5728 446 209 22 0 chr3 20628350 20628441 -197408717 - L1ME4a LINE L1 -509 5612 5520 360 223 53 11 chr3 20629099 20629193 -197407965 + MIR SINE MIR 155 252 -10 1737 176 0 3 chr3 20629223 20629525 -197407633 - AluJo SINE Alu -11 301 1 1687 199 41 28 chr3 20630785 20631147 -197406011 - MLT1A2 LTR MaLR 0 374 8 1925 141 3 3 chr3 20631149 20631448 -197405710 + AluJo SINE Alu 1 299 -13 2182 98 17 0 chr3 20632688 20632985 -197404173 + AluSx SINE Alu 1 302 -10 1926 124 29 10 chr3 20633312 20633618 -197403540 + AluSx SINE Alu 1 312 0 853 264 23 0 chr3 20635122 20635342 -197401816 + MIR SINE MIR 17 241 -21 7996 54 1 0 chr3 20635386 20636351 -197400807 - LTR5 LTR ERVK -3 966 1 1188 144 18 168 chr3 20636897 20637030 -197400128 + MER33 DNA MER1_type 1 152 -2433 2113 135 127 16 chr3 20637030 20637415 -197399743 - MSTA LTR MaLR 0 428 1 1188 144 18 168 chr3 20637415 20637480 -197399678 + MER33 DNA MER1_type 152 225 -2360 1031 181 0 0 chr3 20637480 20637646 -197399512 + FRAM SINE Alu 1 166 0 1188 144 18 168 chr3 20637646 20637827 -197399331 + MER33 DNA MER1_type 225 324 0 225 321 42 54 chr3 20637902 20638070 -197399088 - L2 LINE L2 -213 3059 2894 25 0 0 0 chr3 20638714 20638739 -197398419 + AT_rich Low_complexity Low_complexity 1 25 0 9894 62 5 41 chr3 20638739 20640167 -197396991 - SVA Other Other -9 1377 1 492 293 26 0 chr3 20640206 20640322 -197396836 + MER5A DNA MER1_type 71 189 0 593 266 77 14 chr3 20640485 20640724 -197396434 + L1ME LINE L1 5358 5610 -556 540 250 26 0 chr3 20640914 20641030 -197396128 - MER5A DNA MER1_type 0 189 71 221 213 13 120 chr3 20641084 20641159 -197395999 - MER5A DNA MER1_type -122 67 1 218 336 18 35 chr3 20641159 20641270 -197395888 + MIR SINE MIR 9 117 -145 985 128 14 0 chr3 20641278 20641426 -197395732 - AluSg/x SINE Alu -29 283 134 2084 98 28 0 chr3 20641426 20641712 -197395446 - AluSx SINE Alu -18 294 1 476 289 39 6 chr3 20641712 20641868 -197395290 + MIR SINE MIR 97 257 -5 268 203 69 0 chr3 20642048 20642128 -197395030 + L1ME LINE L1 5698 5781 -340 1754 156 7 3 chr3 20642433 20642734 -197394424 + AluSx SINE Alu 1 302 -10 1998 117 0 26 chr3 20642847 20643155 -197394003 - AluSg SINE Alu -10 300 1 1713 135 20 13 chr3 20643266 20643569 -197393589 - AluJo SINE Alu -5 307 3 400 290 86 6 chr3 20643868 20644030 -197393128 + MIR3 SINE MIR 31 205 -3 2058 121 7 0 chr3 20644306 20644604 -197392554 - AluSx SINE Alu -12 300 1 676 128 0 0 chr3 20645261 20645363 -197391795 + U13 snRNA snRNA 1 102 -2 523 269 71 120 chr3 20645381 20645554 -197391604 - L2 LINE L2 0 3313 3133 783 209 126 0 chr3 20645554 20645736 -197391422 - MER3 DNA MER1_type -3 206 2 523 269 71 120 chr3 20645736 20645825 -197391333 - L2 LINE L2 -180 3133 3041 1808 146 31 0 chr3 20645825 20646112 -197391046 - AluSx SINE Alu -16 296 1 523 269 71 120 chr3 20646112 20646297 -197390861 - L2 LINE L2 -272 3041 2887 227 182 13 91 chr3 20646360 20646437 -197390721 + L1ME LINE L1 5664 5734 -387 2284 91 0 0 chr3 20646442 20646739 -197390419 + AluSx SINE Alu 1 297 -15 1563 169 32 3 chr3 20646852 20647136 -197390022 + AluJo SINE Alu 1 292 -20 2072 119 3 0 chr3 20647146 20647441 -197389717 + AluSq SINE Alu 2 297 -16 497 262 16 0 chr3 20648686 20648808 -197388350 + MIR SINE MIR 23 146 -116 24 0 0 0 chr3 20649311 20649335 -197387823 + AT_rich Low_complexity Low_complexity 1 24 0 466 330 34 11 chr3 20651291 20651467 -197385691 - MIR SINE MIR -79 183 4 526 200 50 61 chr3 20651611 20651791 -197385367 + MIR SINE MIR 4 181 -81 331 250 176 16 chr3 20652882 20653070 -197384088 + L1ME4a LINE L1 5259 5476 -694 311 219 68 82 chr3 20653197 20653343 -197383815 + L1ME4a LINE L1 5636 5779 -342 230 227 67 88 chr3 20653386 20653580 -197383578 - L1MC4 LINE L1 -16 8026 7837 363 258 119 60 chr3 20653583 20653703 -197383455 + L1ME4a LINE L1 5805 5937 -184 1620 173 24 0 chr3 20653703 20653998 -197383160 + AluJo SINE Alu 1 302 -10 363 258 119 60 chr3 20653998 20654028 -197383130 + L1ME4a LINE L1 5937 5964 -157 235 116 0 0 chr3 20654050 20654093 -197383065 + LTR66 LTR ERVL 394 436 -174 236 152 0 0 chr3 20654102 20654148 -197383010 - LTR66 LTR ERVL -171 439 394 183 156 0 0 chr3 20654165 20654197 -197382961 + (TATG)n Simple_repeat Simple_repeat 1 32 0 2399 104 0 0 chr3 20655037 20655344 -197381814 - AluSp SINE Alu -6 307 1 2183 114 7 0 chr3 20655481 20655771 -197381387 - AluSx SINE Alu -16 296 5 1140 137 53 123 chr3 20655775 20655964 -197381194 + LTR37B LTR ERV1 135 289 -179 1828 172 10 10 chr3 20655964 20656272 -197380886 - AluJb SINE Alu -4 308 1 1140 137 53 123 chr3 20656272 20656441 -197380717 + LTR37B LTR ERV1 289 468 0 360 68 0 0 chr3 20656609 20656653 -197380505 + Alu SINE Alu 1 44 -255 21 0 0 0 chr3 20656910 20656931 -197380227 + AT_rich Low_complexity Low_complexity 1 21 0 2302 104 3 0 chr3 20657185 20657483 -197379675 - AluSx SINE Alu -8 304 6 2215 116 0 13 chr3 20657510 20657675 -197379483 - AluSx SINE Alu -14 298 137 2326 84 23 3 chr3 20657675 20657974 -197379184 - AluSc SINE Alu -4 305 1 2215 116 0 13 chr3 20657974 20658110 -197379048 - AluSx SINE Alu -175 137 1 2370 105 0 3 chr3 20658147 20658461 -197378697 - AluSq SINE Alu 0 313 1 1895 159 6 16 chr3 20658765 20659080 -197378078 + AluJo SINE Alu 1 312 0 2044 101 7 4 chr3 20659746 20660023 -197377135 + AluSc SINE Alu 1 278 -31 234 0 0 0 chr3 20660026 20660052 -197377106 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 204 344 16 0 chr3 20660062 20660123 -197377035 - MIR SINE MIR -117 91 30 505 216 24 8 chr3 20660194 20660319 -197376839 + Charlie5 DNA MER1_type 7 133 -2479 * 1932 143 58 0 chr3 20660315 20660678 -197376480 + Charlie5 DNA MER1_type 2241 2624 0 181 326 93 0 chr3 20661150 20661236 -197375922 - MIR3 SINE MIR -1 207 114 2443 97 0 0 chr3 20664180 20664490 -197372668 + AluSx SINE Alu 1 310 -2 201 74 0 0 chr3 20665900 20665927 -197371231 + (TG)n Simple_repeat Simple_repeat 1 27 0 1872 146 0 14 chr3 20665984 20666264 -197370894 - AluJb SINE Alu -18 294 19 617 221 0 8 chr3 20666301 20666423 -197370735 - FLAM_A SINE Alu -4 138 18 1942 150 3 35 chr3 20666454 20666596 -197370562 + AluJb SINE Alu 1 146 -166 2198 108 0 0 chr3 20666596 20666919 -197370239 + AluSx SINE Alu 1 323 0 1942 150 3 35 chr3 20666919 20667088 -197370070 + AluJb SINE Alu 146 303 -9 2071 140 3 13 chr3 20667096 20667404 -197369754 + AluSx SINE Alu 1 305 -7 1968 67 0 4 chr3 20667511 20667777 -197369381 - AluY SINE Alu 0 310 46 1288 171 14 46 chr3 20667844 20668124 -197369034 - AluJb SINE Alu -2 310 40 1460 170 92 3 chr3 20668330 20668612 -197368546 + AluJo SINE Alu 1 307 -5 265 336 25 34 chr3 20668905 20669024 -197368134 + L2 LINE L2 3137 3254 -18 2129 141 0 0 chr3 20669241 20669553 -197367605 - AluJb SINE Alu 0 312 1 222 250 56 0 chr3 20670022 20670094 -197367064 + MIR3 SINE MIR 109 184 -24 241 342 0 43 chr3 20671027 20671188 -197365970 + G-rich Low_complexity Low_complexity 6 159 0 1638 174 25 0 chr3 20671862 20672137 -197365021 + AluJo SINE Alu 1 282 -30 180 0 0 0 chr3 20672159 20672179 -197364979 + (CA)n Simple_repeat Simple_repeat 1 20 0 2173 119 3 3 chr3 20672231 20672542 -197364616 - AluSx SINE Alu -1 311 1 245 259 188 36 chr3 20672615 20672715 -197364443 + MIR SINE MIR 4 124 -138 2164 99 26 10 chr3 20672715 20673018 -197364140 - AluY SINE Alu -3 308 1 245 259 188 36 chr3 20673018 20673029 -197364129 + MIR SINE MIR 124 132 -130 908 108 0 43 chr3 20673340 20673479 -197363679 + FLAM_C SINE Alu 1 133 0 1957 123 41 17 chr3 20673670 20673963 -197363195 + AluJb SINE Alu 1 300 -12 322 269 90 21 chr3 20674271 20674416 -197362742 - HAL1 LINE L1 -1606 901 747 869 218 39 0 chr3 20674416 20674595 -197362563 - MER5A DNA MER1_type 0 189 4 691 219 76 19 chr3 20674655 20674865 -197362293 - HAL1 LINE L1 -1852 655 434 240 246 223 40 chr3 20674887 20675062 -197362096 - HAL1 LINE L1 -2159 348 142 476 241 173 11 chr3 20675167 20675358 -197361800 + MIR SINE MIR 25 246 -16 216 0 0 0 chr3 20675358 20675382 -197361776 + (TG)n Simple_repeat Simple_repeat 2 25 0 2210 129 3 0 chr3 20675383 20675686 -197361472 - AluSx SINE Alu -8 304 1 265 288 0 0 chr3 20675712 20675771 -197361387 - HAL1 LINE L1 -2439 68 10 2273 96 7 0 chr3 20675844 20676146 -197361012 + AluSc SINE Alu 1 304 -5 406 243 60 39 chr3 20676162 20676307 -197360851 - MIR3 SINE MIR -68 140 15 770 209 25 12 chr3 20677539 20677702 -197359456 + FRAM SINE Alu 1 165 -1 1113 103 157 0 chr3 20677736 20677921 -197359237 + L1PB4 LINE L1 5941 6154 -2 252 221 45 36 chr3 20677931 20678052 -197359106 - MIR SINE MIR -61 147 19 1866 146 10 3 chr3 20678368 20678663 -197358495 - AluJo SINE Alu -15 297 1 935 240 53 0 chr3 20679346 20679554 -197357604 - MER58A DNA MER1_type -1 223 5 2283 83 4 0 chr3 20680110 20680388 -197356770 + AluSq SINE Alu 17 295 -18 3152 107 43 14 chr3 20680415 20680525 -197356633 + L1MB3 LINE L1 5677 5782 -401 2016 151 7 3 chr3 20680525 20680824 -197356334 + AluJb SINE Alu 1 300 -12 3152 107 43 14 chr3 20680824 20681199 -197355959 + L1MB3 LINE L1 5782 6176 -7 922 242 278 0 chr3 20682183 20682546 -197354612 - L2 LINE L2 -27 3286 2823 227 134 60 75 chr3 20682548 20682615 -197354543 + L2 LINE L2 3207 3272 0 1538 152 63 40 chr3 20683395 20683769 -197353389 - AluJo SINE Alu 0 381 1 464 196 20 39 chr3 20683938 20684040 -197353118 + MER5A DNA MER1_type 14 113 -76 217 319 81 16 chr3 20684537 20684722 -197352436 - L2 LINE L2 -228 3044 2848 273 298 61 8 chr3 20685800 20685931 -197351227 - L2 LINE L2 -189 3083 2946 1716 151 95 0 chr3 20685998 20686283 -197350875 + AluJo SINE Alu 1 312 0 2202 195 109 10 chr3 20686546 20687060 -197350098 - L1MD2 LINE L1 -268 6091 5527 877 59 67 0 chr3 20687060 20687179 -197349979 + MLT2D LTR ERVL 1 127 -287 753 179 0 0 chr3 20687183 20687295 -197349863 + FLAM_A SINE Alu 4 115 -27 1657 148 13 52 chr3 20687312 20687445 -197349713 + MLT2C2 LTR ERVL 115 252 -212 1994 160 0 6 chr3 20687445 20687757 -197349401 + AluJb SINE Alu 1 310 -2 1657 148 13 52 chr3 20687757 20687928 -197349230 + MLT2C2 LTR ERVL 252 407 -57 235 202 8 48 chr3 20687961 20688085 -197349073 + CT-rich Low_complexity Low_complexity 1 119 0 225 100 0 0 chr3 20688122 20688152 -197349006 + MLT2C2 LTR ERVL 433 462 -2 233 188 0 0 chr3 20688190 20688254 -197348904 + L1MC4 LINE L1 6640 6703 -1339 296 203 27 0 chr3 20688254 20688328 -197348830 + (TATG)n Simple_repeat Simple_repeat 2 77 0 466 122 265 0 chr3 20688341 20688439 -197348719 - AluJb SINE Alu -178 134 11 2532 182 18 27 chr3 20688458 20688540 -197348618 - L1MD2 LINE L1 -743 5403 5322 2377 100 3 3 chr3 20688540 20688851 -197348307 - AluSp SINE Alu -2 311 1 2532 182 18 27 chr3 20688851 20689539 -197347619 - L1MD2 LINE L1 -824 5322 4745 7977 128 39 32 chr3 20689539 20689697 -197347461 - Tigger2 DNA MER2_type -1 2717 2562 1835 178 3 19 chr3 20689697 20690012 -197347146 - AluJo SINE Alu -2 310 1 7977 128 39 32 chr3 20690012 20690116 -197347042 - Tigger2 DNA MER2_type -156 2562 2460 2348 107 0 0 chr3 20690116 20690416 -197346742 + AluSc SINE Alu 1 300 -9 7977 128 39 32 chr3 20690416 20691514 -197345644 - Tigger2 DNA MER2_type -258 2460 1347 520 259 26 0 chr3 20691514 20691630 -197345528 - FLAM_C SINE Alu -23 120 2 1136 159 150 35 chr3 20691680 20691907 -197345251 - AluJo SINE Alu -24 288 36 548 154 0 11 chr3 20691913 20692004 -197345154 - L1MC1 LINE L1 -13 6320 6231 358 165 3 75 chr3 20692007 20692154 -197345004 - L1M LINE L1 -772 5412 4611 1673 141 12 4 chr3 20692160 20692408 -197344750 + AluJo SINE Alu 25 274 -38 4223 229 92 35 chr3 20692410 20692655 -197344503 - L1MD2 LINE L1 -1696 4450 4221 1967 166 0 3 chr3 20692655 20692963 -197344195 + AluJb SINE Alu 1 307 -5 4223 229 92 35 chr3 20692963 20694214 -197342944 - L1MD2 LINE L1 -1925 4221 2868 1164 241 93 59 chr3 20694358 20694995 -197342163 - L1ME3A LINE L1 -326 5844 5159 2182 113 0 3 chr3 20694995 20695286 -197341872 - AluSx SINE Alu -22 290 1 1164 241 93 59 chr3 20695286 20695445 -197341713 - L1ME3A LINE L1 -1011 5159 5007 831 141 0 83 chr3 20695447 20695603 -197341555 - FLAM_C SINE Alu 0 143 1 590 285 62 10 chr3 20695616 20695904 -197341254 - L1ME3A LINE L1 -1147 4999 4697 225 116 0 70 chr3 20695974 20696017 -197341141 + LTR62 LTR ERVK 614 653 -66 911 142 18 138 chr3 20696156 20696302 -197340856 - L1PA16 LINE L1 0 6156 5994 2423 96 0 0 chr3 20696302 20696604 -197340554 - AluSx SINE Alu -10 302 1 911 142 18 138 chr3 20696604 20696688 -197340470 - L1PA16 LINE L1 -162 5994 5901 9605 47 103 3 chr3 20696688 20697892 -197339266 - SVA Other Other -5 1381 58 258 32 0 0 chr3 20697892 20697923 -197339235 + (AGGGGG)n Simple_repeat Simple_repeat 3 33 0 911 142 18 138 chr3 20697923 20697986 -197339172 - L1PA16 LINE L1 -252 5904 5904 752 300 93 29 chr3 20698231 20698877 -197338281 + L2 LINE L2 2001 2687 -627 1879 85 0 0 chr3 20698927 20699163 -197337995 - AluY SINE Alu -16 295 60 2333 100 0 3 chr3 20699324 20699625 -197337533 + AluSc SINE Alu 1 300 -9 21 0 0 0 chr3 20699766 20699787 -197337371 + AT_rich Low_complexity Low_complexity 1 21 0 278 213 0 0 chr3 20700641 20700688 -197336470 - AluJb SINE Alu -185 117 71 250 250 19 0 chr3 20700673 20700725 -197336433 - AluSp SINE Alu -115 188 136 * 895 141 60 148 chr3 20700731 20700819 -197336339 - L1MD2 LINE L1 0 6359 6265 2626 56 0 0 chr3 20700819 20701122 -197336036 - AluY SINE Alu -8 303 1 1687 192 0 32 chr3 20701125 20701433 -197335725 - AluJo SINE Alu -10 302 5 895 141 60 148 chr3 20701433 20701624 -197335534 - L1MD2 LINE L1 -96 6263 6101 496 297 26 31 chr3 20701727 20701922 -197335236 + MIR SINE MIR 57 250 -12 1167 196 159 4 chr3 20701947 20702212 -197334946 - AluJo SINE Alu 0 304 2 777 143 0 8 chr3 20702413 20702546 -197334612 - FLAM_C SINE Alu 0 133 2 512 284 101 0 chr3 20702606 20702775 -197334383 - L3 LINE CR1 -292 1285 1100 718 279 156 32 chr3 20702935 20703601 -197333557 + HAL1 LINE L1 7 782 -1725 1817 224 87 34 chr3 20703604 20704250 -197332908 + HAL1 LINE L1 840 1519 -988 751 158 8 0 chr3 20704256 20704376 -197332782 + FLAM_C SINE Alu 2 122 -21 300 111 0 0 chr3 20704376 20704421 -197332737 + (TA)n Simple_repeat Simple_repeat 1 45 0 228 209 22 44 chr3 20704426 20704517 -197332641 + L1MC4 LINE L1 6615 6703 -1339 270 176 0 0 chr3 20704520 20704571 -197332587 + (TA)n Simple_repeat Simple_repeat 2 52 0 237 287 0 0 chr3 20704577 20704664 -197332494 + L1MC4 LINE L1 6614 6700 -1342 311 322 0 0 chr3 20704667 20704757 -197332401 + L1MC4 LINE L1 6614 6703 -1339 * 318 311 0 0 chr3 20704677 20704767 -197332391 - L1MC4 LINE L1 -1339 6703 6614 707 184 0 0 chr3 20704807 20704921 -197332237 + FLAM_A SINE Alu 16 129 -13 805 240 96 52 chr3 20704921 20705082 -197332076 + HAL1 LINE L1 1527 1706 -801 2101 122 3 3 chr3 20705082 20705378 -197331780 - AluSq SINE Alu -17 296 1 805 240 96 52 chr3 20705378 20705487 -197331671 + HAL1 LINE L1 1706 1809 -698 633 238 65 9 chr3 20705576 20705790 -197331368 + HAL1 LINE L1 2049 2274 -233 893 216 113 56 chr3 20705802 20705851 -197331307 - MLT1F LTR MaLR 0 593 548 1702 118 75 25 chr3 20705851 20706131 -197331027 - AluSx SINE Alu -18 294 1 893 216 113 56 chr3 20706131 20706550 -197330608 - MLT1F LTR MaLR -45 548 1 358 259 109 109 chr3 20706553 20706727 -197330431 + HAL1 LINE L1 2285 2458 -49 1199 166 0 37 chr3 20708143 20708360 -197328798 + MER3 DNA MER1_type 1 209 0 195 358 104 0 chr3 20708385 20708452 -197328706 - MIR SINE MIR -64 144 71 1630 165 44 34 chr3 20708600 20708897 -197328261 + AluJb SINE Alu 1 300 -12 191 325 50 12 chr3 20709020 20709100 -197328058 - L2 LINE L2 -5 3308 3226 926 127 0 15 chr3 20709153 20709287 -197327871 - AluSq SINE Alu -33 280 149 2137 113 0 11 chr3 20709291 20709614 -197327544 - AluSx SINE Alu 0 320 1 815 244 169 12 chr3 20709648 20710012 -197327146 - L2 LINE L2 -147 3166 2750 339 335 72 20 chr3 20710071 20710223 -197326935 + L1ME4a LINE L1 5714 5873 -248 1708 154 52 11 chr3 20711045 20711340 -197325818 - AluSg SINE Alu 0 306 1 519 60 0 0 chr3 20712242 20712309 -197324849 + (T)n Simple_repeat Simple_repeat 1 67 0 1498 200 33 26 chr3 20712536 20712841 -197324317 + AluJo SINE Alu 1 307 -5 2464 68 0 37 chr3 20713159 20713481 -197323677 - AluY SINE Alu -1 310 1 1192 111 12 0 chr3 20713749 20713920 -197323238 - AluSg/x SINE Alu -7 305 133 2370 115 0 0 chr3 20713920 20714232 -197322926 - AluSx SINE Alu 0 312 1 2361 94 0 10 chr3 20714620 20714927 -197322231 + AluSq SINE Alu 1 304 -9 2238 121 0 0 chr3 20714941 20715248 -197321910 + AluSx SINE Alu 1 307 -5 1567 181 48 48 chr3 20716067 20716377 -197320781 + AluJo SINE Alu 1 310 -2 256 307 61 26 chr3 20716422 20716536 -197320622 - MIR SINE MIR -88 174 57 208 307 95 49 chr3 20716585 20716790 -197320368 + MIR SINE MIR 34 256 -6 1847 137 18 11 chr3 20716858 20717142 -197320016 + AluJb SINE Alu 27 312 0 2558 74 0 0 chr3 20717202 20717513 -197319645 - AluY SINE Alu 0 311 1 192 288 68 14 chr3 20717740 20717813 -197319345 - MIR3 SINE MIR -29 179 103 230 196 201 59 chr3 20718198 20718299 -197318859 - L1ME4a LINE L1 -175 5946 5861 1744 151 97 0 chr3 20718299 20718578 -197318580 - AluJb SINE Alu -6 306 1 230 196 201 59 chr3 20718578 20718695 -197318463 - L1ME4a LINE L1 -260 5861 5697 2247 120 0 3 chr3 20718717 20719018 -197318140 - AluSx SINE Alu -12 300 1 1180 262 119 32 chr3 20719019 20719108 -197318050 - L2 LINE L2 -1515 1799 1719 2012 135 7 16 chr3 20719108 20719412 -197317746 - AluSx SINE Alu -11 301 1 2468 95 0 0 chr3 20719412 20719718 -197317440 - AluSx SINE Alu -6 306 1 1180 262 119 32 chr3 20719718 20720053 -197317105 - L2 LINE L2 -1595 1719 1333 1829 155 13 28 chr3 20720053 20720370 -197316788 + AluSx SINE Alu 1 312 0 180 316 102 49 chr3 20720628 20720872 -197316286 - L2 LINE L2 -173 3099 2843 535 264 75 29 chr3 20722974 20723148 -197314010 - MIR3 SINE MIR -4 204 23 2330 125 0 0 chr3 20723480 20723793 -197313365 - AluSq SINE Alu 0 313 1 338 293 204 0 chr3 20724027 20724184 -197312974 - MIR SINE MIR -13 249 61 2291 105 0 3 chr3 20726525 20726821 -197310337 + AluSx SINE Alu 1 295 -17 1950 156 16 3 chr3 20727198 20727505 -197309653 + AluJo SINE Alu 1 311 -1 205 324 58 72 chr3 20727638 20727765 -197309393 - L2 LINE L2 -11 3261 3135 1656 158 59 7 chr3 20727765 20728037 -197309121 + AluJo SINE Alu 1 286 -26 205 324 58 72 chr3 20728037 20728048 -197309110 - L2 LINE L2 -137 3135 3125 368 256 39 62 chr3 20729019 20729148 -197308010 - MER103 DNA DNA 0 166 41 1769 148 0 79 chr3 20729760 20730090 -197307068 + AluJo SINE Alu 1 304 -8 301 299 142 15 chr3 20731223 20731357 -197305801 + MIR3 SINE MIR 17 167 -41 340 305 52 46 chr3 20735169 20735343 -197301815 - MER5A DNA MER1_type -1 188 14 266 313 140 18 chr3 20735575 20735741 -197301417 - MIR SINE MIR -49 213 30 1542 162 0 0 chr3 20736182 20736416 -197300742 - AluJo SINE Alu -78 234 1 5617 204 70 46 chr3 20736804 20737770 -197299388 - L1MB8 LINE L1 0 6178 5237 2469 75 10 0 chr3 20737770 20738076 -197299082 - AluSc SINE Alu 0 309 1 5617 204 70 46 chr3 20738076 20739757 -197297401 - L1MB8 LINE L1 -941 5237 3476 744 248 130 90 chr3 20740134 20740427 -197296731 + L2 LINE L2 2307 2624 -690 2275 97 0 29 chr3 20740427 20740735 -197296423 + AluSg SINE Alu 1 299 -11 744 248 130 90 chr3 20740735 20740873 -197296285 + L2 LINE L2 2624 2755 -559 2422 87 7 3 chr3 20741025 20741334 -197295824 - AluSx SINE Alu -2 310 1 257 222 28 42 chr3 20741355 20741427 -197295731 - L2 LINE L2 -44 3269 3199 2270 124 0 0 chr3 20741774 20742073 -197295085 - AluSx SINE Alu -13 299 1 247 234 0 0 chr3 20742178 20742225 -197294933 + MER5A DNA MER1_type 9 55 -134 1068 152 24 0 chr3 20742669 20742834 -197294324 + AluJo SINE Alu 1 169 -143 492 230 75 11 chr3 20743359 20743533 -197293625 - L2 LINE L2 -189 3083 2899 205 133 0 0 chr3 20744250 20744280 -197292878 - MIR SINE MIR -118 144 115 1746 148 4 0 chr3 20744853 20745158 -197292000 - AluJb SINE Alu 0 316 11 304 172 203 0 chr3 20745506 20745570 -197291588 - MIR SINE MIR -109 153 77 2657 153 19 19 chr3 20745709 20746135 -197291023 + MSTB LTR MaLR 1 426 0 7000 151 59 40 chr3 20746135 20746242 -197290916 + MSTB-int LTR MaLR 1 104 -1547 2131 129 3 3 chr3 20746242 20746536 -197290622 + AluSx SINE Alu 1 294 -18 7000 151 59 40 chr3 20746536 20746899 -197290259 + MSTB-int LTR MaLR 104 458 -1193 2108 146 0 13 chr3 20746899 20747214 -197289944 - AluSq SINE Alu 0 313 3 7000 151 59 40 chr3 20747214 20748060 -197289098 + MSTB-int LTR MaLR 458 1344 -307 249 96 0 0 chr3 20748060 20748098 -197289060 + AluSx SINE Alu 1 34 -268 1535 199 181 24 chr3 20748107 20748570 -197288588 - LTR10A LTR ERV1 -61 548 13 2152 103 0 14 chr3 20748574 20748685 -197288473 + AluSx SINE Alu 26 137 -175 2310 105 0 10 chr3 20748685 20748991 -197288167 + AluSq SINE Alu 1 303 -10 2152 103 0 14 chr3 20748991 20749161 -197287997 + AluSx SINE Alu 137 303 -9 1564 89 13 188 chr3 20749161 20749363 -197287795 + MSTB-int LTR MaLR 1336 1572 -79 1762 82 0 0 chr3 20749363 20749582 -197287576 - AluSg/x SINE Alu -9 301 83 1564 89 13 188 chr3 20749582 20749675 -197287483 + MSTB-int LTR MaLR 1572 1680 29 1954 155 0 7 chr3 20749675 20749971 -197287187 + AluJb SINE Alu 1 294 -18 2220 105 0 56 chr3 20749974 20750298 -197286860 + AluSq SINE Alu 1 306 -7 1564 89 13 188 chr3 20750298 20750380 -197286778 + MSTB-int LTR MaLR 1556 1651 0 2660 160 17 0 chr3 20750380 20750799 -197286359 + MSTB LTR MaLR 1 426 0 206 246 77 15 chr3 20750799 20750864 -197286294 + MIR3 SINE MIR 99 167 -41 1054 209 22 13 chr3 20751560 20751785 -197285373 + AluJo SINE Alu 1 227 -85 967 160 51 6 chr3 20752274 20752430 -197284728 - AluJo SINE Alu -149 163 1 2418 100 0 0 chr3 20752433 20752743 -197284415 - AluSx SINE Alu -2 310 1 2401 63 0 7 chr3 20752807 20753108 -197284050 + AluY SINE Alu 1 299 -12 196 111 0 56 chr3 20753238 20753274 -197283884 - MIR SINE MIR -112 150 117 4007 154 70 42 chr3 20753285 20753941 -197283217 - L1MB7 LINE L1 0 6184 5547 1802 150 27 31 chr3 20753941 20754235 -197282923 - AluJo SINE Alu -19 293 1 4007 154 70 42 chr3 20754235 20754424 -197282734 - L1MB7 LINE L1 -637 5547 5312 1972 140 21 0 chr3 20754424 20754710 -197282448 - AluSx SINE Alu -20 292 1 4007 154 70 42 chr3 20754710 20754741 -197282417 - L1MB7 LINE L1 -872 5312 5283 200 236 0 36 chr3 20754893 20754948 -197282210 - MIR SINE MIR -112 150 98 2040 142 23 3 chr3 20754948 20755251 -197281907 + AluJo SINE Alu 1 309 -3 2328 112 0 0 chr3 20755255 20755559 -197281599 + AluSx SINE Alu 1 304 -8 258 328 151 8 chr3 20755584 20755822 -197281336 + L3 LINE CR1 1166 1437 -140 2419 75 0 13 chr3 20756109 20756459 -197280699 - AluSq SINE Alu 0 356 11 296 24 0 24 chr3 20756460 20756502 -197280656 + (CCTG)n Simple_repeat Simple_repeat 2 42 0 298 262 13 27 chr3 20756502 20756604 -197280554 + CT-rich Low_complexity Low_complexity 3 180 0 * 611 239 39 0 chr3 20756583 20756713 -197280445 - AluJb SINE Alu 0 312 178 1628 195 17 7 chr3 20756605 20756892 -197280266 - AluJo SINE Alu -22 290 1 1764 98 12 12 chr3 20757042 20757286 -197279872 + AluSx SINE Alu 50 293 -19 744 129 32 0 chr3 20757286 20757410 -197279748 + Tigger1 DNA MER2_type 484 611 -1807 1808 174 44 49 chr3 20757412 20757544 -197279614 - L1M4c LINE L1 -5605 1041 910 1986 160 3 0 chr3 20757544 20757844 -197279314 - AluJb SINE Alu -11 301 1 1808 174 44 49 chr3 20757844 20758118 -197279040 - L1M4c LINE L1 -5736 910 637 355 246 53 9 chr3 20758218 20758332 -197278826 + L1M4c LINE L1 1667 1785 -4599 1946 156 0 31 chr3 20758344 20758520 -197278638 - AluJb SINE Alu -2 310 147 2308 97 3 31 chr3 20758520 20758841 -197278317 - AluSp SINE Alu -1 312 1 1946 156 0 31 chr3 20758841 20758984 -197278174 - AluJb SINE Alu -165 147 1 325 167 83 42 chr3 20758984 20759056 -197278102 - L1M4c LINE L1 -6465 77 3 622 225 62 0 chr3 20759085 20759214 -197277944 - AluJo SINE Alu -175 137 1 323 178 47 116 chr3 20759376 20759419 -197277739 - L1M4c LINE L1 -4688 1696 1652 2300 95 3 3 chr3 20759419 20759724 -197277434 - AluY SINE Alu -6 305 1 323 178 47 116 chr3 20759724 20759767 -197277391 - L1M4c LINE L1 -4732 1652 1619 1931 158 7 10 chr3 20759767 20760077 -197277081 - AluJo SINE Alu -3 309 1 323 178 47 116 chr3 20760077 20760118 -197277040 - L1M4c LINE L1 -4765 1619 1577 2400 84 10 0 chr3 20760122 20760418 -197276740 - AluSx SINE Alu -13 299 1 2018 112 7 7 chr3 20760680 20760966 -197276192 + AluSg SINE Alu 1 286 -24 736 240 51 39 chr3 20760978 20761232 -197275926 + L2 LINE L2 2905 3161 -152 1378 151 77 5 chr3 20761232 20761595 -197275563 - LTR65 LTR ERV1 0 669 224 1629 152 74 115 chr3 20761610 20762096 -197275062 + MER90 LTR ERV1 72 537 -77 1123 173 4 67 chr3 20762196 20762272 -197274886 - AluJb SINE Alu -101 211 132 2387 73 0 10 chr3 20762272 20762572 -197274586 - AluY SINE Alu -14 297 1 1123 173 4 67 chr3 20762572 20762720 -197274438 - AluJb SINE Alu -180 132 1 2338 117 0 0 chr3 20762751 20763050 -197274108 - AluSg SINE Alu -10 300 2 2078 138 17 0 chr3 20763114 20763411 -197273747 - AluSg SINE Alu -7 303 2 321 195 23 11 chr3 20763414 20763501 -197273657 - L1M4 LINE L1 -842 5304 5217 439 20 0 0 chr3 20763634 20763685 -197273473 + AluY SINE Alu 6 56 -254 983 172 10 66 chr3 20763785 20763813 -197273345 + AluSg/x SINE Alu 117 145 -167 2568 54 0 0 chr3 20763813 20764110 -197273048 + AluY SINE Alu 1 297 -14 983 172 10 66 chr3 20764110 20764279 -197272879 + AluSg/x SINE Alu 145 303 -9 352 173 86 0 chr3 20764289 20764370 -197272788 - L1ME LINE L1 -468 5702 5615 443 200 0 21 chr3 20764401 20764496 -197272662 + MER69 DNA AcHobo 2432 2524 -2 322 240 89 24 chr3 20764655 20764787 -197272371 + LTR33A LTR ERVL 50 155 -368 1754 128 4 0 chr3 20765587 20765838 -197271320 - AluSx SINE Alu -19 293 42 1543 273 61 25 chr3 20765846 20766444 -197270714 + L1M4 LINE L1 3622 4250 -1896 1737 162 3 11 chr3 20766444 20766728 -197270430 + AluJo SINE Alu 27 308 -4 1543 273 61 25 chr3 20766728 20766822 -197270336 + L1M4 LINE L1 4250 4339 -1807 792 214 21 16 chr3 20766873 20767065 -197270093 + AluJo SINE Alu 120 312 0 1987 76 0 0 chr3 20767072 20767308 -197269850 + AluSq SINE Alu 1 236 -77 466 231 85 8 chr3 20767371 20767501 -197269657 - L1ME1 LINE L1 -253 5913 5774 224 58 13 142 chr3 20767604 20767759 -197269399 + (TA)n Simple_repeat Simple_repeat 2 136 0 305 116 14 82 chr3 20767828 20767974 -197269184 + (TA)n Simple_repeat Simple_repeat 1 136 0 2141 116 0 0 chr3 20767974 20768259 -197268899 - AluSx SINE Alu -27 285 1 1221 148 76 17 chr3 20768290 20768526 -197268632 + AluJo SINE Alu 41 290 -22 1018 183 0 0 chr3 20768852 20769021 -197268137 + AluJo SINE Alu 127 295 -17 2404 105 0 10 chr3 20769023 20769337 -197267821 + AluSx SINE Alu 1 311 -1 2328 64 7 7 chr3 20769337 20769645 -197267513 + AluY SINE Alu 1 308 0 279 71 0 214 chr3 20771143 20771195 -197265963 + AluJ/FRAM SINE Alu 232 261 -41 1988 141 18 0 chr3 20771195 20771479 -197265679 - AluSx SINE Alu -23 289 1 279 71 0 214 chr3 20771479 20771510 -197265648 + AluJ/FRAM SINE Alu 261 297 -5 2129 180 45 47 chr3 20771510 20771613 -197265545 + L1MB8 LINE L1 5325 5427 -757 2267 106 0 0 chr3 20771613 20771905 -197265253 + AluSg SINE Alu 1 292 -18 2129 180 45 47 chr3 20771905 20772085 -197265073 + L1MB8 LINE L1 5427 5606 -578 1903 129 18 7 chr3 20772085 20772398 -197264760 + AluSx SINE Alu 1 316 0 2129 180 45 47 chr3 20772398 20772473 -197264685 + L1MB8 LINE L1 5606 5680 -504 2132 215 11 9 chr3 20772473 20772915 -197264243 + LTR47B LTR ERVL 1 443 0 2129 180 45 47 chr3 20772915 20773104 -197264054 + L1MB8 LINE L1 5680 5874 -310 943 158 0 7 chr3 20773108 20773247 -197263911 + FAM SINE Alu 13 150 -35 1982 121 0 7 chr3 20773276 20773549 -197263609 + AluSx SINE Alu 1 271 -41 389 311 0 0 chr3 20773556 20773646 -197263512 - L1MC4 LINE L1 -1339 6703 6614 * 395 296 0 0 chr3 20773575 20773663 -197263495 + L1MC4 LINE L1 6615 6702 -1340 539 221 135 0 chr3 20773705 20773922 -197263236 + L1MB8 LINE L1 5902 6166 -17 575 257 47 69 chr3 20773963 20774239 -197262919 - MLT1I LTR MaLR -28 381 112 2333 124 0 0 chr3 20774515 20774821 -197262337 - AluSx SINE Alu -6 306 1 2391 109 0 0 chr3 20774821 20775124 -197262034 - AluSx SINE Alu -8 304 2 381 294 5 64 chr3 20775125 20775312 -197261846 - L1MCc LINE L1 -5578 845 670 1316 151 22 30 chr3 20775588 20775820 -197261338 - AluJb SINE Alu 0 312 83 996 271 57 8 chr3 20775823 20776189 -197260969 - L1MCc LINE L1 -5999 424 41 305 300 58 9 chr3 20776224 20776486 -197260672 + L1M4 LINE L1 5120 5399 -747 1868 162 10 3 chr3 20776486 20776776 -197260382 + AluJo SINE Alu 3 294 -18 2241 121 0 0 chr3 20776951 20777241 -197259917 + AluSx SINE Alu 1 290 -22 393 236 136 61 chr3 20777309 20777573 -197259585 + L1MCb LINE L1 973 1248 -4856 1798 180 0 7 chr3 20777587 20777876 -197259282 + AluJo SINE Alu 1 287 -25 1127 216 98 36 chr3 20777900 20778057 -197259101 + L1MCb LINE L1 2767 2913 -3651 2413 60 0 17 chr3 20778057 20778358 -197258800 + AluY SINE Alu 1 296 -15 1127 216 98 36 chr3 20778358 20778588 -197258570 + L1MCb LINE L1 2913 3178 -3386 889 196 0 7 chr3 20778588 20778741 -197258417 + FRAM SINE Alu 1 146 -30 550 209 37 52 chr3 20778772 20778963 -197258195 + L1MCb LINE L1 3189 3376 -3188 1596 168 0 93 chr3 20778963 20779296 -197257862 + AluJb SINE Alu 1 302 0 1512 109 52 0 chr3 20779361 20779571 -197257587 + AluSc SINE Alu 83 303 -6 1559 167 4 4 chr3 20779572 20779824 -197257334 + AluJo SINE Alu 25 276 -36 1350 22 11 17 chr3 20779839 20780018 -197257140 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 287 175 0 16 chr3 20780027 20780090 -197257068 + GA-rich Low_complexity Low_complexity 2 63 0 669 158 17 85 chr3 20780096 20780227 -197256931 + L1ME LINE L1 5358 5476 -690 2390 91 0 3 chr3 20780227 20780523 -197256635 + AluSq SINE Alu 3 297 -16 669 158 17 85 chr3 20780523 20780568 -197256590 + L1ME LINE L1 5476 5522 -644 699 98 0 10 chr3 20780674 20780776 -197256382 + AluSg/x SINE Alu 206 306 -4 2337 105 0 0 chr3 20780786 20781081 -197256077 + AluSx SINE Alu 1 295 -17 631 157 56 0 chr3 20781092 20781200 -197255958 + AluJb SINE Alu 177 290 -22 2270 109 10 0 chr3 20781216 20781518 -197255640 - AluSx SINE Alu -5 307 3 4785 220 71 67 chr3 20781518 20781570 -197255588 - L1M4b LINE L1 -5253 1606 1556 1906 170 0 13 chr3 20781570 20781876 -197255282 - AluJb SINE Alu -10 302 1 4785 220 71 67 chr3 20781876 20782483 -197254675 - L1M4b LINE L1 -5303 1556 953 2285 119 7 0 chr3 20782483 20782793 -197254365 - AluSx SINE Alu 0 312 1 4785 220 71 67 chr3 20782793 20783626 -197253532 - L1M4b LINE L1 -5906 953 107 180 0 0 0 chr3 20783626 20783646 -197253512 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2257 89 25 0 chr3 20783649 20783931 -197253227 - AluSx SINE Alu -23 289 1 972 185 0 0 chr3 20783935 20784092 -197253066 - FRAM SINE Alu -19 157 1 531 111 0 0 chr3 20784232 20784304 -197252854 + AluS SINE Alu 2 73 -240 222 270 48 0 chr3 20784304 20784367 -197252791 + L2 LINE L2 3242 3307 -6 1768 181 11 0 chr3 20784637 20784924 -197252234 - AluJb SINE Alu -8 304 15 461 289 132 18 chr3 20784953 20785226 -197251932 - LTR16A LTR ERVL -77 373 70 274 251 212 40 chr3 20785292 20785549 -197251609 - L2 LINE L2 -297 3016 2719 529 122 24 0 chr3 20785897 20785979 -197251179 + AluJ/FLAM SINE Alu 5 88 -224 596 180 108 0 chr3 20786079 20786190 -197250968 - FLAM_C SINE Alu -20 123 1 1525 150 0 0 chr3 20786263 20786483 -197250675 + AluSx SINE Alu 49 268 -44 2537 43 10 0 chr3 20786491 20786820 -197250338 + AluY SINE Alu 1 311 0 495 258 26 26 chr3 20788333 20788488 -197248670 - MIR3 SINE MIR 0 208 54 528 16 0 0 chr3 20788565 20788626 -197248532 + (GGAA)n Simple_repeat Simple_repeat 1 61 0 1296 251 151 37 chr3 20788626 20788785 -197248373 - L2 LINE L2 -438 2876 2737 1740 201 10 0 chr3 20788785 20789083 -197248075 - AluJo SINE Alu -11 301 1 1296 251 151 37 chr3 20789083 20789309 -197247849 - L2 LINE L2 -577 2737 2538 2278 124 3 0 chr3 20789309 20789616 -197247542 + AluSq SINE Alu 1 308 -5 1296 251 151 37 chr3 20789616 20789746 -197247412 - L2 LINE L2 -776 2538 2301 1282 98 11 6 chr3 20789780 20789963 -197247195 - MER83-int LTR ERV1 -4089 196 13 3237 103 11 5 chr3 20789964 20790409 -197246749 - MER83 LTR ERV1 0 448 1 854 162 57 72 chr3 20790461 20790726 -197246432 + L1M4 LINE L1 4115 4375 -1771 3082 145 40 23 chr3 20790733 20791058 -197246100 + L1MC1 LINE L1 5523 5864 -469 2310 117 7 0 chr3 20791058 20791367 -197245791 + AluSx SINE Alu 1 311 -1 3082 145 40 23 chr3 20791367 20791614 -197245544 + L1MC1 LINE L1 5864 6105 -228 2110 138 0 0 chr3 20791614 20791910 -197245248 + AluJb SINE Alu 1 296 -16 189 0 0 0 chr3 20791913 20791934 -197245224 + (CA)n Simple_repeat Simple_repeat 2 22 0 987 150 31 171 chr3 20791934 20792007 -197245151 + L1M4 LINE L1 4378 4460 -1686 2333 105 3 0 chr3 20792007 20792302 -197244856 + AluSp SINE Alu 1 296 -17 987 150 31 171 chr3 20792302 20792406 -197244752 + L1M4 LINE L1 4460 4577 -1569 2425 55 3 14 chr3 20792406 20792698 -197244460 + AluY SINE Alu 10 298 -13 987 150 31 171 chr3 20792698 20792740 -197244418 + L1M4 LINE L1 4577 4623 -1523 2036 153 0 7 chr3 20792740 20793041 -197244117 + AluJb SINE Alu 1 299 -13 987 150 31 171 chr3 20793041 20793239 -197243919 + L1M4 LINE L1 4623 4738 -1408 761 150 0 8 chr3 20793260 20793380 -197243778 + AluJo/FLAM SINE Alu 8 126 -186 1066 426 28 3 chr3 20793382 20793695 -197243463 + AluY SINE Alu 2 321 0 1192 151 4 84 chr3 20793777 20794050 -197243108 + AluJb SINE Alu 64 312 0 2178 81 12 59 chr3 20794161 20794481 -197242677 + AluY SINE Alu 1 305 -6 269 268 14 0 chr3 20794498 20794569 -197242589 + MIR SINE MIR 156 227 -35 234 369 16 25 chr3 20794981 20795103 -197242055 + L3 LINE CR1 654 774 -803 555 265 94 26 chr3 20795319 20795651 -197241507 + MER115 DNA AcHobo 123 548 -145 451 332 46 76 chr3 20795840 20796301 -197240857 + L3 LINE CR1 1128 1574 -3 185 290 58 29 chr3 20796734 20796803 -197240355 + MIR3 SINE MIR 86 156 -52 239 328 188 0 chr3 20797396 20797524 -197239634 - L2 LINE L2 0 3313 3162 902 239 39 9 chr3 20797549 20797779 -197239379 + MIR SINE MIR 13 249 -13 2431 99 0 3 chr3 20797780 20798093 -197239065 - AluSx SINE Alu 0 312 1 590 315 98 31 chr3 20798233 20798560 -197238598 - MLT1L LTR MaLR -82 533 185 904 154 0 0 chr3 20798563 20798699 -197238459 + AluJo SINE Alu 1 136 -176 2064 112 14 10 chr3 20798708 20799026 -197238132 + AluSq SINE Alu 1 313 0 234 237 34 0 chr3 20799026 20799085 -197238073 - MLT1L LTR MaLR -423 192 132 665 296 40 10 chr3 20799195 20799394 -197237764 - L2 LINE L2 -257 3056 2852 629 169 63 14 chr3 20799655 20799797 -197237361 - MER3 DNA MER1_type -87 122 21 2138 152 3 0 chr3 20799859 20800169 -197236989 - AluSx SINE Alu -1 311 1 1812 123 0 0 chr3 20800309 20800561 -197236597 - AluSx SINE Alu -19 293 42 2098 99 3 27 chr3 20800724 20801016 -197236142 + AluSg SINE Alu 5 289 -21 257 257 76 100 chr3 20801909 20802119 -197235039 - L2 LINE L2 -127 3145 2941 1945 128 3 44 chr3 20802172 20802311 -197234847 + AluSq SINE Alu 1 144 -169 2416 86 0 7 chr3 20802311 20802614 -197234544 + AluSx SINE Alu 1 301 -11 1945 128 3 44 chr3 20802614 20802794 -197234364 + AluSq SINE Alu 144 307 -6 645 152 0 0 chr3 20803379 20803478 -197233680 + AluJo SINE Alu 36 134 -178 281 345 9 26 chr3 20804014 20804127 -197233031 - MIR SINE MIR -21 241 131 582 125 0 0 chr3 20804167 20804255 -197232903 + HY3 scRNA scRNA 11 98 -3 238 255 51 31 chr3 20804382 20804480 -197232678 - MIR3 SINE MIR -51 157 58 260 265 15 15 chr3 20805104 20805172 -197231986 - L2 LINE L2 -14 3299 3232 2349 96 0 22 chr3 20805203 20805516 -197231642 + AluSx SINE Alu 1 306 -6 1779 174 10 26 chr3 20805629 20805939 -197231219 + AluJb SINE Alu 1 305 -7 189 338 44 0 chr3 20806218 20806286 -197230872 - MIR SINE MIR -55 153 83 863 169 12 24 chr3 20806508 20806674 -197230484 - MER58B DNA MER1_type -11 330 167 2394 51 41 3 chr3 20806697 20806990 -197230168 + AluY SINE Alu 1 304 -7 1933 163 0 13 chr3 20807750 20808057 -197229101 + AluJb SINE Alu 1 303 -9 2266 103 10 0 chr3 20808061 20808362 -197228796 + AluSq SINE Alu 1 304 -9 1661 135 20 20 chr3 20808542 20808699 -197228459 - AluSx SINE Alu -17 295 139 198 0 0 0 chr3 20808699 20808721 -197228437 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 2431 71 0 0 chr3 20808721 20809004 -197228154 - AluSp SINE Alu -30 283 1 1661 135 20 20 chr3 20809004 20809090 -197228068 - AluSx SINE Alu -171 141 51 6981 70 5 8 chr3 20809092 20810060 -197227098 - MER11C LTR ERVK 0 1071 18 441 143 29 0 chr3 20810060 20810130 -197227028 - AluS SINE Alu -245 73 2 243 326 91 46 chr3 20810139 20810213 -197226945 + MER5A DNA MER1_type 7 76 -113 2286 122 7 0 chr3 20810213 20810517 -197226641 + AluSq SINE Alu 1 306 -7 243 326 91 46 chr3 20810517 20810617 -197226541 + MER5A DNA MER1_type 76 189 0 939 128 0 0 chr3 20810647 20810780 -197226378 + FLAM_C SINE Alu 1 133 0 25 0 0 0 chr3 20811349 20811374 -197225784 + AT_rich Low_complexity Low_complexity 1 25 0 1061 139 0 0 chr3 20811389 20811540 -197225618 - AluSg/x SINE Alu -24 286 136 244 209 0 0 chr3 20811589 20811632 -197225526 - AluJ/monomer SINE Alu -259 44 2 781 257 23 0 chr3 20811637 20811851 -197225307 - L1M4 LINE L1 -2187 3959 3741 2494 87 0 0 chr3 20811887 20812197 -197224961 - AluY SINE Alu -1 310 1 1224 112 6 0 chr3 20812234 20812395 -197224763 - AluSx SINE Alu -150 162 1 2285 97 28 0 chr3 20812903 20813193 -197223965 - AluSc SINE Alu -11 298 1 1479 167 67 7 chr3 20813624 20813893 -197223265 - AluJo SINE Alu -27 285 1 327 263 0 12 chr3 20815012 20815092 -197222066 + MIR SINE MIR 68 146 -116 2011 78 3 57 chr3 20815386 20815682 -197221476 + AluSx SINE Alu 1 280 -32 198 0 0 0 chr3 20815684 20815706 -197221452 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2389 77 0 3 chr3 20816125 20816425 -197220733 - AluSx SINE Alu -13 299 1 236 310 58 0 chr3 20817092 20817179 -197219979 - L2 LINE L2 -2 3311 3220 369 0 0 0 chr3 20817189 20817230 -197219928 + (TTA)n Simple_repeat Simple_repeat 2 42 0 488 35 0 0 chr3 20817233 20817291 -197219867 - AluSx SINE Alu -28 281 224 1661 128 0 4 chr3 20817392 20817619 -197219539 - AluSx SINE Alu -86 226 1 284 298 39 19 chr3 20818113 20818217 -197218941 + L2 LINE L2 3189 3294 -19 1069 56 0 0 chr3 20818708 20818833 -197218325 - AluSg/x SINE Alu -16 294 170 2376 86 3 13 chr3 20818835 20819139 -197218019 - AluSq SINE Alu -12 301 1 293 330 94 18 chr3 20819839 20820063 -197217095 + L1MEd LINE L1 565 805 -5314 194 359 29 19 chr3 20820333 20820436 -197216722 + L2 LINE L2 2946 3049 -223 333 257 68 0 chr3 20820446 20820520 -197216638 + L1MC4 LINE L1 6614 6692 -1350 2368 103 7 0 chr3 20820522 20820824 -197216334 - AluSx SINE Alu -8 304 1 2536 57 0 0 chr3 20820837 20821134 -197216024 - AluY SINE Alu -14 297 1 390 239 65 77 chr3 20821198 20821353 -197215805 + L2 LINE L2 3143 3295 -18 1743 178 0 3 chr3 20821353 20821645 -197215513 - 7SLRNA srpRNA srpRNA -7 313 23 1875 136 14 34 chr3 20821703 20821998 -197215160 - AluSx SINE Alu -23 289 1 2452 77 0 0 chr3 20822006 20822304 -197214854 - AluSc SINE Alu -11 298 1 1755 191 38 46 chr3 20822334 20822727 -197214431 + MLT1B LTR MaLR 1 390 0 1668 85 0 0 chr3 20822772 20823008 -197214150 + AluSg/x SINE Alu 83 318 0 1668 165 48 7 chr3 20823017 20823312 -197213846 + AluJb SINE Alu 1 306 0 1941 129 7 4 chr3 20824666 20824987 -197212171 - AluSx SINE Alu 0 327 6 1445 159 4 4 chr3 20828868 20829095 -197208063 + AluJb SINE Alu 1 227 -85 501 212 10 0 chr3 20829108 20829207 -197207951 - MER3 DNA MER1_type -109 100 1 183 219 24 0 chr3 20829217 20829258 -197207900 + MIR3 SINE MIR 166 207 -1 655 161 8 17 chr3 20829506 20829615 -197207543 + AluSg/x SINE Alu 185 294 -15 2111 142 0 3 chr3 20829615 20829924 -197207234 + AluSg SINE Alu 1 308 -2 2404 91 13 0 chr3 20829932 20830239 -197206919 + AluSx SINE Alu 1 311 -1 939 216 118 50 chr3 20830249 20830648 -197206510 - L1M4 LINE L1 -1542 4604 4179 * 1312 231 53 42 chr3 20830645 20831300 -197205858 - L1MDb LINE L1 -4959 1581 910 300 338 134 32 chr3 20831337 20831553 -197205605 - L1MDb LINE L1 -5573 957 720 316 342 30 43 chr3 20831830 20832131 -197205027 - L1MDb LINE L1 -6210 330 34 2283 114 0 0 chr3 20832207 20832505 -197204653 - AluSx SINE Alu -14 298 1 1670 170 67 3 chr3 20832719 20833001 -197204157 - AluJb SINE Alu -11 301 2 1656 190 13 20 chr3 20833054 20833354 -197203804 - AluJo SINE Alu -8 304 7 416 188 8 34 chr3 20833384 20833501 -197203657 - L1ME3A LINE L1 -18 6152 6039 2116 130 3 3 chr3 20833602 20833895 -197203263 - AluJb SINE Alu -9 303 11 354 344 151 5 chr3 20833995 20834270 -197202888 + L2 LINE L2 2748 3054 -218 710 167 0 0 chr3 20834467 20834575 -197202583 + FLAM_A SINE Alu 18 125 -17 706 176 30 0 chr3 20834794 20834925 -197202233 + MER5A DNA MER1_type 55 189 0 1526 185 3 28 chr3 20835028 20835315 -197201843 + AluJo SINE Alu 16 295 -17 994 122 0 34 chr3 20835468 20835615 -197201543 + FLAM_C SINE Alu 1 142 -1 391 296 80 23 chr3 20835757 20835933 -197201225 - MIR SINE MIR 0 262 77 2374 75 0 3 chr3 20836293 20836588 -197200570 + AluY SINE Alu 1 294 -17 201 39 0 0 chr3 20836623 20836649 -197200509 + (CATA)n Simple_repeat Simple_repeat 3 28 0 1994 116 12 66 chr3 20836652 20836972 -197200186 + AluSx SINE Alu 1 303 -9 22 0 0 0 chr3 20836977 20836999 -197200159 + AT_rich Low_complexity Low_complexity 1 22 0 507 294 83 53 chr3 20837038 20837249 -197199909 + L1M4 LINE L1 4023 4226 -1920 305 93 19 0 chr3 20837249 20837303 -197199855 + (TA)n Simple_repeat Simple_repeat 2 56 0 507 294 83 53 chr3 20837303 20837520 -197199638 + L1M4 LINE L1 4226 4435 -1711 2353 114 0 0 chr3 20837520 20837828 -197199330 + AluSx SINE Alu 1 308 -4 507 294 83 53 chr3 20837828 20838334 -197198824 + L1M4 LINE L1 4435 4992 -1154 1859 181 3 3 chr3 20838334 20838637 -197198521 + AluJb SINE Alu 7 309 -3 507 294 83 53 chr3 20838637 20838682 -197198476 + L1M4 LINE L1 4992 5034 -1112 2200 106 3 62 chr3 20838691 20839011 -197198147 + AluSx SINE Alu 1 301 -11 1112 82 7 0 chr3 20839112 20839247 -197197911 + AluSq/x SINE Alu 1 136 -176 180 294 52 96 chr3 20839595 20839731 -197197427 + L2 LINE L2 3137 3266 -6 2540 72 0 0 chr3 20839833 20840137 -197197021 + AluY SINE Alu 1 304 -7 1218 69 0 0 chr3 20840213 20840358 -197196800 + AluSq/x SINE Alu 1 145 -168 2260 95 14 0 chr3 20840358 20840653 -197196505 + AluSq SINE Alu 1 299 -14 2308 117 3 0 chr3 20841004 20841312 -197195846 - AluSq SINE Alu -4 309 1 5043 49 15 4 chr3 20841623 20842735 -197194423 - MER11A LTR ERVK 0 1266 1 2253 105 0 22 chr3 20842747 20843062 -197194096 - AluSg SINE Alu -1 309 2 270 303 131 14 chr3 20843734 20843879 -197193279 - MIR3 SINE MIR -18 190 29 2070 148 0 0 chr3 20843959 20844249 -197192909 + AluSx SINE Alu 1 290 -22 798 81 88 29 chr3 20844310 20844446 -197192712 - L1MB3 LINE L1 -9 6174 6031 1848 74 0 4 chr3 20844760 20844990 -197192168 + AluSq SINE Alu 84 312 -1 834 303 166 15 chr3 20845085 20845626 -197191532 + L2 LINE L2 2127 2749 -565 1915 119 19 47 chr3 20845626 20845946 -197191212 + AluSx SINE Alu 1 311 -1 379 235 59 0 chr3 20845946 20846031 -197191127 + L2 LINE L2 3214 3303 -10 1209 167 32 23 chr3 20846039 20846210 -197190948 - AluJb SINE Alu -5 307 132 2397 99 0 6 chr3 20846210 20846523 -197190635 - AluSx SINE Alu -1 311 1 1209 167 32 23 chr3 20846523 20846572 -197190586 - AluJb SINE Alu -180 132 85 2714 185 50 70 chr3 20846622 20847373 -197189785 + L1 LINE L1 3791 4556 -1590 1730 109 0 0 chr3 20847373 20847594 -197189564 - AluSg/x SINE Alu -7 305 85 2714 185 50 70 chr3 20847594 20847692 -197189466 + L1 LINE L1 4556 4655 -1491 1805 187 0 7 chr3 20847692 20847992 -197189166 + AluJo SINE Alu 1 298 -14 2714 185 50 70 chr3 20847992 20848060 -197189098 + L1 LINE L1 4655 4630 -1516 2361 100 7 7 chr3 20848060 20848369 -197188789 + AluSc SINE Alu 1 309 0 2714 185 50 70 chr3 20848369 20848506 -197188652 + L1 LINE L1 4629 4767 -1379 210 239 101 87 chr3 20848609 20848637 -197188521 + MIR SINE MIR 123 149 -113 2205 102 0 26 chr3 20848637 20848950 -197188208 + AluSx SINE Alu 1 305 -7 210 239 101 87 chr3 20848950 20849059 -197188099 + MIR SINE MIR 149 262 0 2331 94 0 17 chr3 20849296 20849594 -197187564 + AluSc SINE Alu 1 293 -16 2628 50 0 0 chr3 20849594 20849890 -197187268 + AluY SINE Alu 1 297 -14 256 310 65 60 chr3 20849909 20850109 -197187049 - MIR SINE MIR -49 213 13 268 282 134 40 chr3 20850223 20850462 -197186696 + MIR SINE MIR 2 262 0 231 36 0 0 chr3 20850509 20850537 -197186621 + (T)n Simple_repeat Simple_repeat 1 28 0 4460 73 9 4 chr3 20850544 20851105 -197186053 + LTR6A LTR ERV1 1 564 0 2108 112 4 0 chr3 20851105 20851383 -197185775 - AluSx SINE Alu -33 279 1 2515 62 0 10 chr3 20851399 20851704 -197185454 - AluY SINE Alu -9 302 1 1444 196 53 14 chr3 20851856 20852137 -197185021 + AluJo SINE Alu 1 292 -20 2586 172 99 68 chr3 20852147 20852212 -197184946 + LTR8A LTR ERV1 2 64 -663 2262 97 23 0 chr3 20852212 20852511 -197184647 - AluSp SINE Alu -7 306 1 2586 172 99 68 chr3 20852511 20852830 -197184328 + LTR8A LTR ERV1 64 372 -355 2583 77 0 0 chr3 20852830 20853141 -197184017 - AluY SINE Alu 0 311 1 2586 172 99 68 chr3 20853141 20853459 -197183699 + LTR8A LTR ERV1 372 727 0 1679 165 49 3 chr3 20853602 20853887 -197183271 + AluSx SINE Alu 1 298 -14 2082 120 3 20 chr3 20853888 20854187 -197182971 + AluSx SINE Alu 1 294 -18 1511 165 62 28 chr3 20854770 20855061 -197182097 + AluJo SINE Alu 5 305 -7 2525 65 0 40 chr3 20855065 20855388 -197181770 - AluY SINE Alu 0 311 2 231 331 81 15 chr3 20855922 20856058 -197181100 + MIR SINE MIR 117 261 -1 1387 128 22 13 chr3 20856259 20856486 -197180672 - AluJo SINE Alu -83 229 1 207 0 0 0 chr3 20856560 20856583 -197180575 + (CCCGG)n Simple_repeat Simple_repeat 4 26 0 258 116 0 0 chr3 20856800 20856843 -197180315 + (CCG)n Simple_repeat Simple_repeat 3 45 0 1910 131 0 7 chr3 20857848 20858154 -197179004 - AluJo SINE Alu -8 304 1 2376 71 0 0 chr3 20858372 20858683 -197178475 - AluY SINE Alu 0 311 1 226 318 47 0 chr3 20859097 20859182 -197177976 - MIR SINE MIR -108 154 66 387 336 68 32 chr3 20859317 20859537 -197177621 - MIR SINE MIR -16 246 19 2362 76 3 0 chr3 20859567 20859868 -197177290 - AluSp SINE Alu -11 302 1 374 228 84 30 chr3 20860139 20860182 -197176976 + Charlie7 DNA MER1_type 2400 2439 -173 2643 10 0 3 chr3 20860182 20860515 -197176643 - AluYb8 SINE Alu 0 332 1 1652 134 73 14 chr3 20860523 20860798 -197176360 - AluSx SINE Alu -11 301 11 374 228 84 30 chr3 20860798 20860946 -197176212 + Charlie7 DNA MER1_type 2445 2612 0 1204 103 0 6 chr3 20860996 20861161 -197175997 + AluSx SINE Alu 1 164 -148 22 0 0 0 chr3 20861406 20861428 -197175730 + AT_rich Low_complexity Low_complexity 1 22 0 321 256 68 83 chr3 20861541 20861674 -197175484 - L1MC5 LINE L1 -26 7935 7805 2180 97 7 3 chr3 20861786 20862085 -197175073 - AluSq SINE Alu -12 301 2 652 106 11 0 chr3 20862881 20862975 -197174183 - THE1B LTR MaLR -72 292 198 1816 147 27 3 chr3 20863008 20863301 -197173857 + AluSx SINE Alu 1 300 -12 1936 128 10 0 chr3 20863312 20863601 -197173557 - AluSx SINE Alu -20 292 1 669 164 0 0 chr3 20863601 20863723 -197173435 - L1MB4 LINE L1 -39 6141 6020 6815 46 7 1 chr3 20863725 20864913 -197172245 + L1PA5 LINE L1 4932 6126 -28 1883 178 38 99 chr3 20864915 20865040 -197172118 - L1MB4 LINE L1 -721 5462 5331 1731 174 16 10 chr3 20865040 20865344 -197171814 - AluJb SINE Alu -6 306 1 1883 178 38 99 chr3 20865344 20865545 -197171613 - L1MB4 LINE L1 -852 5331 5119 1707 172 3 28 chr3 20865545 20865864 -197171294 - AluJo SINE Alu -1 311 1 1883 178 38 99 chr3 20865864 20866199 -197170959 - L1MB4 LINE L1 -1064 5119 4810 353 140 0 0 chr3 20866308 20866358 -197170800 - Alu SINE Alu -252 50 1 777 158 84 91 chr3 20866362 20866520 -197170638 + L1MB5 LINE L1 4849 5006 -1140 1690 157 20 20 chr3 20866520 20866820 -197170338 - AluJo SINE Alu -12 300 1 777 158 84 91 chr3 20866820 20866946 -197170212 + L1MB5 LINE L1 5006 5131 -1015 2158 102 3 0 chr3 20867009 20867303 -197169855 + AluSg SINE Alu 1 295 -15 2129 110 3 3 chr3 20867307 20867606 -197169552 + AluSc SINE Alu 1 299 -10 1951 118 11 7 chr3 20867614 20867901 -197169257 + AluSx SINE Alu 5 292 -20 2145 105 10 3 chr3 20867936 20868240 -197168918 + AluSq SINE Alu 1 306 -7 855 155 18 12 chr3 20868241 20868409 -197168749 + L1MB5 LINE L1 5660 5828 -346 2009 109 39 0 chr3 20868409 20868693 -197168465 + AluSq SINE Alu 1 295 -18 1728 166 3 7 chr3 20868706 20869001 -197168157 + AluSx SINE Alu 1 294 -18 245 315 11 11 chr3 20869669 20869758 -197167400 - MLT1K LTR MaLR -496 92 4 330 26 0 0 chr3 20870165 20870204 -197166954 + (GA)n Simple_repeat Simple_repeat 1 39 0 * 396 0 0 0 chr3 20870203 20870247 -197166911 + (TG)n Simple_repeat Simple_repeat 2 45 0 199 255 0 20 chr3 20871228 20871279 -197165879 + L3 LINE CR1 1518 1567 -10 711 148 90 0 chr3 20871476 20871598 -197165560 + FLAM_C SINE Alu 1 133 0 1101 186 9 36 chr3 20871982 20872202 -197164956 - AluJo SINE Alu -7 305 92 2276 96 0 0 chr3 20872281 20872584 -197164574 + AluSc SINE Alu 1 303 -6 1677 162 38 3 chr3 20872602 20872892 -197164266 - AluJb SINE Alu -12 300 1 2078 128 0 0 chr3 20874058 20874354 -197162804 - AluSx SINE Alu -16 296 1 489 163 0 0 chr3 20874359 20874439 -197162719 + Tigger5 DNA MER2_type 2244 2323 0 221 167 14 97 chr3 20874439 20874511 -197162647 + MIR SINE MIR 197 262 0 2231 89 0 16 chr3 20874646 20874949 -197162209 - AluSx SINE Alu -14 298 1 479 172 71 10 chr3 20874966 20875065 -197162093 - MER41B LTR ERV1 -88 547 443 2234 224 21 101 chr3 20875289 20875726 -197161432 + L1ME3 LINE L1 5327 5798 -364 1848 128 14 20 chr3 20875726 20876022 -197161136 - AluJb SINE Alu -18 294 1 2062 95 61 0 chr3 20876029 20876323 -197160835 - AluSp SINE Alu -1 312 1 2234 224 21 101 chr3 20876323 20876786 -197160372 + L1ME3 LINE L1 5804 6162 0 1861 143 19 10 chr3 20876823 20877131 -197160027 - AluJb SINE Alu -1 311 1 1655 168 14 7 chr3 20877422 20877714 -197159444 - AluJo SINE Alu -18 294 1 23 33 0 0 chr3 20877716 20877746 -197159412 + AT_rich Low_complexity Low_complexity 1 30 0 1139 123 0 6 chr3 20877795 20877957 -197159201 + AluSq SINE Alu 1 161 -152 456 19 0 0 chr3 20877962 20878015 -197159143 + (TG)n Simple_repeat Simple_repeat 2 54 0 192 186 116 0 chr3 20878175 20878218 -197158940 + L3 LINE CR1 1528 1575 -2 2178 100 3 0 chr3 20878634 20878925 -197158233 - AluSq SINE Alu -21 292 1 2140 107 0 7 chr3 20879594 20879894 -197157264 - AluSx SINE Alu -12 300 3 382 270 223 19 chr3 20880263 20880474 -197156684 - MLT1K LTR MaLR -5 583 330 907 148 59 24 chr3 20880649 20880818 -197156340 + FRAM SINE Alu 1 175 -1 1064 184 79 57 chr3 20881013 20881137 -197156021 + L1MC4 LINE L1 6860 6980 -805 2284 74 10 16 chr3 20881137 20881448 -197155710 - AluSc SINE Alu 0 309 1 1064 184 79 57 chr3 20881448 20882145 -197155013 + L1MC4 LINE L1 6980 7619 -166 333 164 30 0 chr3 20882146 20882213 -197154945 - L1MC3 LINE L1 -1608 6177 6109 237 349 79 16 chr3 20883428 20883554 -197153604 - MIR SINE MIR -108 154 21 871 194 11 6 chr3 20883623 20883798 -197153360 - MER58A DNA MER1_type -4 220 45 455 127 0 0 chr3 20883802 20883865 -197153293 + AluJo SINE Alu 84 146 -166 1196 144 88 48 chr3 20883865 20884115 -197153043 + AluJb SINE Alu 34 293 -19 557 235 30 62 chr3 20884193 20884426 -197152732 - LTR45 LTR ERV1 0 620 352 2287 45 10 3 chr3 20886745 20887065 -197150093 + AluY SINE Alu 1 311 0 240 310 18 9 chr3 20888223 20888336 -197148822 + (TG)n Simple_repeat Simple_repeat 2 115 0 1790 137 0 0 chr3 20889787 20890049 -197147109 + AluJb SINE Alu 1 262 -50 256 247 26 0 chr3 20894837 20894914 -197142244 + G-rich Low_complexity Low_complexity 2 80 0 205 200 17 26 chr3 20895589 20895704 -197141454 + C-rich Low_complexity Low_complexity 5 118 0 2828 0 0 0 chr3 20896615 20896925 -197140233 + AluYa5 SINE Alu 1 310 -1 545 178 50 0 chr3 20898087 20898188 -197138970 - MIR SINE MIR -53 209 104 216 67 0 0 chr3 20902857 20902887 -197134271 + (CTGGGG)n Simple_repeat Simple_repeat 6 35 0 24 0 0 0 chr3 20909109 20909133 -197128025 + AT_rich Low_complexity Low_complexity 1 24 0 1819 106 75 0 chr3 20909133 20909388 -197127770 - AluSg SINE Alu -36 274 1 837 161 15 0 chr3 20909461 20909591 -197127567 - AluJb SINE Alu -179 133 2 303 266 48 100 chr3 20909592 20909712 -197127446 + L1ME4a LINE L1 5616 5741 -380 1584 207 13 13 chr3 20909712 20910016 -197127142 + AluJo SINE Alu 1 304 -8 303 266 48 100 chr3 20910016 20910189 -197126969 + L1ME4a LINE L1 5741 5884 -237 2485 50 7 7 chr3 20910189 20910488 -197126670 + AluY SINE Alu 1 299 -12 1396 99 0 0 chr3 20910535 20910706 -197126452 + AluSx SINE Alu 1 171 -141 2115 127 0 0 chr3 20910846 20911149 -197126009 + AluSx SINE Alu 1 303 0 250 184 114 53 chr3 20911694 20911808 -197125350 + MER113 DNA MER1_type? 1 121 -400 2009 144 0 26 chr3 20911919 20912225 -197124933 + AluJb SINE Alu 1 298 -14 2387 67 3 0 chr3 20912225 20912553 -197124605 + AluY SINE Alu 1 329 0 2328 114 0 0 chr3 20912553 20912861 -197124297 + AluSp SINE Alu 2 309 -4 296 206 32 95 chr3 20913097 20913223 -197123935 - MIR3 SINE MIR -1 207 90 1791 163 31 0 chr3 20913316 20913610 -197123548 + AluJo SINE Alu 1 303 -9 229 278 14 14 chr3 20913615 20913687 -197123471 - MIR3 SINE MIR -48 160 89 2825 173 125 10 chr3 20913982 20914560 -197122598 + L1M4c LINE L1 8 651 -5733 1930 173 3 0 chr3 20914561 20914861 -197122297 + AluJb SINE Alu 1 301 -11 2791 113 27 44 chr3 20915145 20915581 -197121577 + Tigger1 DNA MER2_type 24 453 -1965 1466 174 10 69 chr3 20915581 20915886 -197121272 - AluJo SINE Alu -14 298 12 2791 113 27 44 chr3 20915886 20915925 -197121233 + Tigger1 DNA MER2_type 453 491 -1927 2242 126 0 3 chr3 20915936 20916238 -197120920 - AluSx SINE Alu -11 301 1 708 161 8 0 chr3 20917891 20918021 -197119137 + FLAM_C SINE Alu 1 131 -2 312 231 160 58 chr3 20918328 20918484 -197118674 + L1MC5 LINE L1 7349 7520 -441 1220 177 68 32 chr3 20918486 20918735 -197118423 + AluJb SINE Alu 1 258 -54 180 0 0 0 chr3 20918743 20918763 -197118395 + (TAA)n Simple_repeat Simple_repeat 2 21 0 333 288 64 8 chr3 20918876 20919001 -197118157 + L1MC4 LINE L1 7759 7890 -152 2253 127 0 0 chr3 20919077 20919384 -197117774 + AluSx SINE Alu 1 307 -5 1311 179 120 18 chr3 20919396 20919670 -197117488 + AluJo SINE Alu 3 304 -8 205 191 21 0 chr3 20919987 20920034 -197117124 + (CAA)n Simple_repeat Simple_repeat 1 48 0 1739 167 10 27 chr3 20920043 20920342 -197116816 + AluJo SINE Alu 1 294 -18 1791 184 7 0 chr3 20920344 20920632 -197116526 + AluJo SINE Alu 1 290 -22 787 250 52 35 chr3 20920994 20921236 -197115922 - MIR SINE MIR -14 248 7 1671 179 29 15 chr3 20921254 20921563 -197115595 - AluJo SINE Alu 0 317 5 535 165 0 10 chr3 20921567 20921664 -197115494 - FLAM_C SINE Alu -11 132 37 824 190 63 0 chr3 20922278 20922436 -197114722 - AluJo/FRAM SINE Alu -10 302 135 1829 104 0 0 chr3 20922436 20922667 -197114491 - AluSg/x SINE Alu -9 303 73 2541 66 0 3 chr3 20922667 20922971 -197114187 - AluY SINE Alu -7 304 1 1217 163 9 40 chr3 20922974 20923201 -197113957 - AluJo SINE Alu -92 220 1 198 233 41 55 chr3 20923211 20923284 -197113874 + MIR SINE MIR 124 195 -67 1974 111 49 59 chr3 20923360 20923565 -197113593 + L1MA3 LINE L1 5887 6088 -217 2235 113 3 0 chr3 20923565 20923865 -197113293 + AluSq SINE Alu 1 301 -12 1974 111 49 59 chr3 20923865 20924047 -197113111 + L1MA3 LINE L1 6088 6270 -35 270 26 0 0 chr3 20924042 20924080 -197113078 - L1MA1 LINE L1 -2 6300 6263 * 1219 195 25 12 chr3 20924086 20924327 -197112831 + AluJb SINE Alu 63 306 -6 376 289 76 41 chr3 20924328 20924525 -197112633 - MIR SINE MIR -57 205 2 1644 152 30 43 chr3 20924942 20925245 -197111913 - AluJo SINE Alu -13 299 1 2274 125 0 3 chr3 20926064 20926367 -197110791 + AluSx SINE Alu 1 302 -10 363 201 119 90 chr3 20926792 20926845 -197110313 + L2 LINE L2 3176 3226 -87 1944 159 3 3 chr3 20926845 20927135 -197110023 - AluSx SINE Alu -22 290 1 363 201 119 90 chr3 20927135 20927215 -197109943 + L2 LINE L2 3226 3313 0 2385 85 0 0 chr3 20927356 20927651 -197109507 + AluY SINE Alu 17 311 0 452 241 165 6 chr3 20927653 20927811 -197109347 + L1ME LINE L1 295 477 -5919 1395 189 108 0 chr3 20927818 20928141 -197109017 + L1ME LINE L1 4044 4401 -1814 2448 92 0 0 chr3 20928142 20928445 -197108713 + AluSc SINE Alu 1 303 -6 457 159 26 80 chr3 20928446 20928559 -197108599 + L1ME LINE L1 5399 5505 -730 1090 104 0 0 chr3 20928560 20928695 -197108463 + AluSq/x SINE Alu 1 135 -177 2376 95 3 0 chr3 20928695 20928991 -197108167 + AluSp SINE Alu 1 297 -16 2464 48 42 0 chr3 20929281 20929570 -197107588 - AluY SINE Alu -10 301 1 244 253 0 27 chr3 20930169 20930244 -197106914 - L2 LINE L2 0 3313 3241 2603 68 3 0 chr3 20930770 20931080 -197106078 + AluY SINE Alu 1 311 0 2335 86 3 0 chr3 20931156 20931448 -197105710 + AluSp SINE Alu 21 313 0 868 87 8 31 chr3 20933570 20933697 -197103461 + AluSg/x SINE Alu 167 290 -20 391 270 56 72 chr3 20933717 20934021 -197103137 - L2 LINE L2 -639 2675 2377 2123 127 3 16 chr3 20934087 20934402 -197102756 + AluJb SINE Alu 2 312 0 1740 141 47 10 chr3 20934565 20934946 -197102212 + L1MB3 LINE L1 5688 6139 -44 2169 133 3 0 chr3 20934952 20935254 -197101904 + AluSx SINE Alu 1 303 -9 1002 167 23 0 chr3 20935878 20936052 -197101106 - MLT1B LTR MaLR 0 390 213 459 131 20 91 chr3 20936055 20936154 -197101004 - MLT1B LTR MaLR -298 92 1 249 306 41 0 chr3 20936426 20936524 -197100634 - MIR3 SINE MIR -22 186 85 2100 85 3 25 chr3 20936551 20936834 -197100324 + AluSx SINE Alu 34 310 -2 1584 243 48 50 chr3 20936869 20937521 -197099637 - L2 LINE L2 -1 3312 2683 839 254 35 66 chr3 20937848 20937974 -197099184 + L1ME LINE L1 4571 4699 -1447 1876 179 7 0 chr3 20937974 20938275 -197098883 - AluJo SINE Alu -9 303 1 839 254 35 66 chr3 20938275 20938542 -197098616 + L1ME LINE L1 4699 4952 -1194 602 172 33 46 chr3 20938565 20938716 -197098442 + MLT1C LTR MaLR 1 149 -318 2123 116 3 7 chr3 20938717 20939019 -197098139 + AluSg SINE Alu 1 301 -9 1622 191 110 23 chr3 20939019 20939490 -197097668 + L1MC4 LINE L1 7125 7636 -406 1588 124 68 0 chr3 20939554 20939803 -197097355 - MER1B DNA MER1_type -1 338 73 1349 169 10 119 chr3 20939804 20939962 -197097196 + L1MC4 LINE L1 6125 5963 -279 2068 125 35 0 chr3 20939962 20940250 -197096908 + AluSq SINE Alu 1 298 -15 1349 169 10 119 chr3 20940250 20940504 -197096654 + L1MC4 LINE L1 5962 6242 0 637 271 127 9 chr3 20940505 20940902 -197096256 + L1ME LINE L1 5177 5623 -547 343 200 25 83 chr3 20942809 20942859 -197094299 + MIR SINE MIR 47 98 -164 2232 79 3 38 chr3 20942859 20943183 -197093975 - AluSq SINE Alu 0 314 1 343 200 25 83 chr3 20943183 20943251 -197093907 + MIR SINE MIR 98 159 -103 305 208 139 5 chr3 20943383 20943485 -197093673 - MIR SINE MIR -68 140 45 249 269 224 32 chr3 20943816 20943972 -197093186 - MLT1K LTR MaLR -22 566 381 351 0 0 0 chr3 20994179 20994187 -197042971 + (TG)n Simple_repeat Simple_repeat 1 47 0 351 0 0 0 chr3 20994187 20994226 -197042932 + (TG)n Simple_repeat Simple_repeat 2 40 0 2212 120 7 0 chr3 20994244 20994544 -197042614 - AluSx SINE Alu -10 302 1 534 266 53 19 chr3 20994801 20995008 -197042150 - L1ME3A LINE L1 0 6170 5957 208 293 189 28 chr3 20995230 20995336 -197041822 + MIR SINE MIR 30 152 -110 1817 142 0 50 chr3 20995585 20995908 -197041250 - AluJo SINE Alu -5 307 1 831 159 8 0 chr3 20997168 20997300 -197039858 + FLAM_C SINE Alu 1 133 -10 2337 102 0 7 chr3 20997755 20998060 -197039098 + AluSx SINE Alu 1 303 -9 30 0 0 0 chr3 20998092 20998122 -197039036 + AT_rich Low_complexity Low_complexity 1 30 0 857 148 8 0 chr3 20998477 20998605 -197038553 + FLAM_C SINE Alu 1 129 -14 2225 126 0 0 chr3 20998750 20999051 -197038107 + AluSq SINE Alu 2 302 -11 2101 132 0 13 chr3 21000306 21000610 -197036548 - AluSx SINE Alu -12 300 1 1025 233 56 69 chr3 21000719 21001096 -197036062 + L1ME3A LINE L1 5519 5890 -280 1713 176 0 4 chr3 21001099 21001378 -197035780 + AluJb SINE Alu 1 278 -34 209 211 0 0 chr3 21001614 21001652 -197035506 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 721 192 0 0 chr3 21001652 21001777 -197035381 - AluJo SINE Alu -178 134 10 2164 110 7 0 chr3 21001791 21002082 -197035076 - AluSc SINE Alu -16 293 1 2528 74 0 3 chr3 21002331 21002643 -197034515 - AluY SINE Alu 0 311 1 1222 99 153 15 chr3 21002853 21003055 -197034103 + MER30 DNA MER1_type 1 230 0 23 0 0 0 chr3 21003072 21003095 -197034063 + AT_rich Low_complexity Low_complexity 1 23 0 499 181 0 0 chr3 21003736 21003830 -197033328 + FLAM_A SINE Alu 42 135 -7 26 0 0 0 chr3 21004188 21004214 -197032944 + AT_rich Low_complexity Low_complexity 1 26 0 787 173 0 15 chr3 21004548 21004681 -197032477 + FLAM_C SINE Alu 3 133 0 678 196 81 48 chr3 21004783 21004992 -197032166 - MER20 DNA MER1_type 0 219 4 21 0 0 0 chr3 21005178 21005199 -197031959 + AT_rich Low_complexity Low_complexity 1 21 0 872 221 52 27 chr3 21005210 21005510 -197031648 - L1 LINE L1 -1483 4663 4345 675 193 0 0 chr3 21006100 21006214 -197030944 - FLAM_A SINE Alu -19 114 1 460 242 60 33 chr3 21006214 21006429 -197030729 - L1 LINE L1 -1746 4400 4180 186 150 0 0 chr3 21006429 21006469 -197030689 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 2858 13 0 3 chr3 21006618 21006929 -197030229 + AluYb8 SINE Alu 1 310 -8 190 326 0 23 chr3 21007204 21007290 -197029868 - MIR SINE MIR -79 183 100 1450 188 52 24 chr3 21007607 21007895 -197029263 + AluJo SINE Alu 3 298 -14 808 283 66 68 chr3 21008013 21008567 -197028591 - L2 LINE L2 -50 3263 2705 1669 187 11 7 chr3 21008568 21008852 -197028306 - AluJb SINE Alu -27 285 1 298 171 0 23 chr3 21008804 21008873 -197028285 - Alu SINE Alu -255 47 1 1814 170 6 10 chr3 21009030 21009341 -197027817 - AluJo SINE Alu -2 310 1 22 56 0 0 chr3 21009538 21009574 -197027584 + AT_rich Low_complexity Low_complexity 1 36 0 216 0 0 0 chr3 21009574 21009598 -197027560 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2197 71 0 0 chr3 21009600 21009880 -197027278 - AluY SINE Alu -31 280 1 377 240 0 31 chr3 21009880 21009976 -197027182 - L1MC4 LINE L1 -150 7892 7800 1654 180 0 23 chr3 21011181 21011486 -197025672 + AluJo SINE Alu 1 298 -14 1366 196 6 55 chr3 21011756 21011930 -197025228 - AluJo SINE Alu -16 296 142 2239 64 54 0 chr3 21011930 21012225 -197024933 - AluY SINE Alu 0 311 1 1366 196 6 55 chr3 21012225 21012361 -197024797 - AluJo SINE Alu -170 142 1 1947 138 13 0 chr3 21013147 21013451 -197023707 + AluSx SINE Alu 1 308 -4 395 268 189 31 chr3 21013451 21013462 -197023696 + MLT1D LTR MaLR 207 215 -290 243 0 0 0 chr3 21013462 21013489 -197023669 + (CA)n Simple_repeat Simple_repeat 2 28 0 395 268 189 31 chr3 21013489 21013704 -197023454 + MLT1D LTR MaLR 215 479 -26 1877 127 18 0 chr3 21013704 21013988 -197023170 + AluSq SINE Alu 1 289 -24 395 268 189 31 chr3 21013988 21014014 -197023144 + MLT1D LTR MaLR 479 500 -5 763 296 56 5 chr3 21014027 21014243 -197022915 - MIR SINE MIR -27 235 9 448 288 16 16 chr3 21015093 21015218 -197021940 - MIR SINE MIR -118 144 20 468 99 0 0 chr3 21015577 21015648 -197021510 + (GA)n Simple_repeat Simple_repeat 2 72 0 225 94 0 0 chr3 21015710 21015742 -197021416 + (T)n Simple_repeat Simple_repeat 1 32 0 1470 91 0 14 chr3 21016288 21016496 -197020662 - AluSq SINE Alu -5 308 104 1038 88 7 0 chr3 21016496 21016633 -197020525 + AluSc SINE Alu 31 168 -141 689 197 8 0 chr3 21016733 21016850 -197020308 - FLAM_C SINE Alu -15 118 1 494 159 45 89 chr3 21016850 21016961 -197020197 - HsTC2 DNA Tc2 -17 1881 1777 1985 95 3 46 chr3 21016961 21017266 -197019892 - AluSg1 SINE Alu -17 292 1 494 159 45 89 chr3 21017266 21017311 -197019847 - HsTC2 DNA Tc2 -121 1777 1732 700 216 5 79 chr3 21017317 21017418 -197019740 - HsTC2 DNA Tc2 -1722 176 94 862 138 0 36 chr3 21017418 21017556 -197019602 + FLAM_A SINE Alu 1 133 0 700 216 5 79 chr3 21017556 21017644 -197019514 - HsTC2 DNA Tc2 -1804 94 1 260 383 20 34 chr3 21019493 21019642 -197017516 - MIR SINE MIR -80 182 36 2297 94 0 0 chr3 21021104 21021412 -197015746 + AluY SINE Alu 1 308 -3 1074 69 0 0 chr3 21021590 21021721 -197015437 + AluSq/x SINE Alu 1 131 -181 2368 69 10 7 chr3 21022375 21022680 -197014478 - AluSp SINE Alu -7 306 1 2190 97 3 3 chr3 21022895 21023203 -197013955 - AluSq SINE Alu -5 308 1 227 189 0 19 chr3 21023592 21023645 -197013513 + CT-rich Low_complexity Low_complexity 1 52 0 225 0 0 91 chr3 21024754 21024798 -197012360 + (CCCCG)n Simple_repeat Simple_repeat 5 44 0 23 54 0 0 chr3 21024903 21024940 -197012218 + GC_rich Low_complexity Low_complexity 1 37 0 41 96 0 0 chr3 21025093 21025218 -197011940 + GC_rich Low_complexity Low_complexity 1 125 0 251 128 39 13 chr3 21025264 21025342 -197011816 + (CCG)n Simple_repeat Simple_repeat 3 82 0 27 0 0 0 chr3 21025359 21025386 -197011772 + GC_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr3 21027201 21027230 -197009928 + AT_rich Low_complexity Low_complexity 1 29 0 2042 89 24 3 chr3 21027289 21027580 -197009578 - AluSx SINE Alu -15 297 1 1950 167 82 22 chr3 21028206 21028608 -197008550 + MSTB LTR MaLR 1 426 0 357 312 121 17 chr3 21028625 21028798 -197008360 - MIR SINE MIR -54 208 18 2113 94 7 3 chr3 21029303 21029600 -197007558 - AluSp SINE Alu -15 298 1 327 340 69 32 chr3 21030787 21031034 -197006124 + L2 LINE L2 3053 3308 -5 347 150 0 0 chr3 21031098 21031158 -197006000 + MER5A DNA MER1_type 1 60 -129 919 213 0 0 chr3 21031158 21031332 -197005826 + AluJo SINE Alu 121 294 -18 735 463 134 4 chr3 21031337 21031590 -197005568 - AluSg SINE Alu -14 286 1 196 321 21 79 chr3 21035078 21035218 -197001940 + L2 LINE L2 3179 3310 -3 230 370 9 37 chr3 21035554 21035662 -197001496 - MIR3 SINE MIR -27 181 77 21 0 0 0 chr3 21037845 21037866 -196999292 + AT_rich Low_complexity Low_complexity 1 21 0 1838 135 14 7 chr3 21037976 21038272 -196998886 - AluSx SINE Alu -3 309 12 1413 219 24 21 chr3 21038643 21038977 -196998181 - MER58B DNA MER1_type -6 335 1 1164 174 5 23 chr3 21039036 21039254 -196997904 - AluJo SINE Alu -15 297 84 1903 140 3 26 chr3 21039258 21039565 -196997593 - AluSx SINE Alu -12 300 1 1832 108 79 0 chr3 21039631 21039910 -196997248 - AluSx SINE Alu -11 301 1 2076 116 17 0 chr3 21040321 21040614 -196996544 + AluSq SINE Alu 1 298 -15 844 230 104 11 chr3 21041369 21041656 -196995502 - L1MD2 LINE L1 -364 5995 5682 2139 82 10 7 chr3 21041687 21042006 -196995152 + AluSq SINE Alu 4 323 0 377 230 168 80 chr3 21042261 21042535 -196994623 + L1MC5 LINE L1 7299 7596 -365 2471 40 0 3 chr3 21042609 21042905 -196994253 + AluY SINE Alu 1 295 -16 341 216 31 21 chr3 21042988 21043085 -196994073 + L1MC5 LINE L1 7832 7929 -32 533 341 75 43 chr3 21043799 21044236 -196992922 - L3 LINE CR1 -65 1512 1062 761 201 197 18 chr3 21044691 21044965 -196992193 + MER33 DNA MER1_type 1 323 -1 254 297 0 14 chr3 21046358 21046432 -196990726 - L3 LINE CR1 -547 1030 958 1914 84 113 0 chr3 21046773 21047047 -196990111 - AluSx SINE Alu -7 305 1 1379 278 85 34 chr3 21047982 21048749 -196988409 + L2 LINE L2 2512 3313 0 2115 96 0 0 chr3 21049069 21049378 -196987780 - AluSq SINE Alu 0 309 1 2220 98 0 0 chr3 21049845 21050140 -196987018 - AluSq SINE Alu -18 295 1 226 262 48 36 chr3 21050751 21050835 -196986323 + MIR SINE MIR 159 243 -19 251 303 56 45 chr3 21050912 21051001 -196986157 - MIR SINE MIR -11 251 162 294 322 63 58 chr3 21051158 21051332 -196985826 + MLT1F LTR MaLR 12 186 -356 1474 175 3 38 chr3 21051654 21051968 -196985190 + AluJo SINE Alu 1 303 -9 186 237 0 68 chr3 21052740 21052799 -196984359 - L2 LINE L2 -75 3238 3184 206 207 37 98 chr3 21053257 21053339 -196983819 + L3 LINE CR1 1403 1479 -98 2027 123 3 3 chr3 21053575 21053876 -196983282 + AluSx SINE Alu 1 301 -11 3496 158 14 23 chr3 21054264 21054414 -196982744 + L1PA16 LINE L1 5522 5672 -494 2337 91 0 0 chr3 21054414 21054722 -196982436 + AluSc SINE Alu 1 308 -1 3496 158 14 23 chr3 21054722 21055222 -196981936 + L1PA16 LINE L1 5672 6166 0 198 0 0 0 chr3 21056529 21056551 -196980607 + (T)n Simple_repeat Simple_repeat 1 22 0 496 167 0 59 chr3 21056588 21056690 -196980468 - FLAM_A SINE Alu -41 101 6 1918 136 3 7 chr3 21057401 21057709 -196979449 + AluSx SINE Alu 1 307 -5 615 237 116 58 chr3 21057721 21058117 -196979041 + HAL1 LINE L1 1368 1786 -721 1232 158 133 65 chr3 21058161 21058439 -196978719 + AluSx SINE Alu 1 297 -5 331 257 48 9 chr3 21058444 21058549 -196978609 + L1MC5 LINE L1 7806 7914 -47 782 153 8 0 chr3 21058574 21058692 -196978466 + AluSq/x SINE Alu 2 120 -193 22 35 0 0 chr3 21058696 21058725 -196978433 + AT_rich Low_complexity Low_complexity 1 29 0 1947 133 3 24 chr3 21061017 21061311 -196975847 + AluSq SINE Alu 1 288 -25 441 0 0 0 chr3 21061339 21061388 -196975770 + (TG)n Simple_repeat Simple_repeat 2 50 0 517 204 0 106 chr3 21061612 21061744 -196975414 - FLAM_A SINE Alu -15 118 1 1839 107 0 0 chr3 21061980 21062213 -196974945 + AluSx SINE Alu 1 233 -79 916 198 24 6 chr3 21062532 21062699 -196974459 + AluJb SINE Alu 121 290 -22 2035 138 0 14 chr3 21062707 21063004 -196974154 + AluSx SINE Alu 1 293 -19 232 204 197 21 chr3 21063057 21063199 -196973959 + Tigger8 DNA MER2_type 326 492 -174 2204 90 0 0 chr3 21063235 21063512 -196973646 + AluSg SINE Alu 13 289 -21 225 336 32 40 chr3 21063684 21063809 -196973349 - MIR3 SINE MIR -41 167 44 2111 224 96 48 chr3 21063817 21063925 -196973233 + L1MB5 LINE L1 2211 2312 -3834 1821 143 3 21 chr3 21063925 21064235 -196972923 + AluJb SINE Alu 1 305 0 2111 224 96 48 chr3 21064235 21064808 -196972350 + L1MB5 LINE L1 2312 2964 -3182 2024 99 3 51 chr3 21064808 21065120 -196972038 + AluSq SINE Alu 1 297 -16 2111 224 96 48 chr3 21065120 21065488 -196971670 + L1MB5 LINE L1 2964 3313 -2833 277 83 62 0 chr3 21065516 21065564 -196971594 - L1MB7 LINE L1 -3 6181 6131 1605 215 39 2 chr3 21065565 21066006 -196971152 - L1MB7 LINE L1 -16 6168 5712 1042 208 43 111 chr3 21066003 21066130 -196971028 + L1MB5 LINE L1 3359 3493 -2653 * 2171 128 0 0 chr3 21066130 21066428 -196970730 + AluSg SINE Alu 1 298 -12 1042 208 43 111 chr3 21066428 21066785 -196970373 + L1MB5 LINE L1 3493 3810 -2336 893 192 47 10 chr3 21066853 21067046 -196970112 + L1MC1 LINE L1 6134 6333 0 2979 204 49 39 chr3 21067060 21067456 -196969702 + L1MB5 LINE L1 5324 5715 -459 2588 62 0 0 chr3 21067456 21067761 -196969397 + AluY SINE Alu 1 305 -6 2979 204 49 39 chr3 21067761 21068207 -196968951 + L1MB5 LINE L1 5715 6174 0 1322 89 0 12 chr3 21069287 21069456 -196967702 - AluSg/x SINE Alu -15 297 131 2068 115 30 13 chr3 21070225 21070530 -196966628 + AluSx SINE Alu 3 312 0 510 246 0 12 chr3 21070530 21070701 -196966457 + GA-rich Low_complexity Low_complexity 2 170 0 1277 167 0 14 chr3 21071029 21071244 -196965914 + AluJb SINE Alu 85 296 -16 889 246 79 30 chr3 21072209 21072514 -196964644 + Charlie1a DNA MER1_type 16 335 -1120 1796 152 37 3 chr3 21072656 21072952 -196964206 + AluJb SINE Alu 1 306 -6 1970 129 41 0 chr3 21073248 21073542 -196963616 + AluSx SINE Alu 1 306 -6 2342 59 31 3 chr3 21074560 21074850 -196962308 - AluY SINE Alu -13 298 1 1206 137 0 32 chr3 21075118 21075332 -196961826 - AluSg/x SINE Alu 0 303 96 1435 181 24 27 chr3 21075447 21075740 -196961418 + AluSx SINE Alu 1 292 -20 520 184 10 10 chr3 21075754 21075857 -196961301 + AluSq/x SINE Alu 4 106 -207 873 159 0 0 chr3 21075959 21076091 -196961067 - AluJb SINE Alu -180 132 1 851 216 43 4 chr3 21076150 21076405 -196960753 + L1M4 LINE L1 4904 5168 -978 1602 173 18 11 chr3 21076431 21076709 -196960449 + AluJo SINE Alu 1 280 -32 2094 131 3 0 chr3 21076710 21077000 -196960158 - AluSx SINE Alu -19 293 3 321 135 0 0 chr3 21077015 21077067 -196960091 + (A)n Simple_repeat Simple_repeat 1 52 0 609 319 101 14 chr3 21077306 21077654 -196959504 + MLT1H1 LTR MaLR 142 519 -36 277 293 0 10 chr3 21077668 21077767 -196959391 + MLT1H1-int LTR MaLR 4 101 -1270 1628 184 10 7 chr3 21078290 21078578 -196958580 - AluJo SINE Alu -23 289 1 240 223 29 58 chr3 21078627 21078730 -196958428 - L1M4 LINE L1 -4898 1644 1545 1750 114 42 19 chr3 21079138 21079401 -196957757 - AluSx SINE Alu -20 292 24 943 257 120 46 chr3 21079986 21080475 -196956683 + MLT1H1 LTR MaLR 50 555 0 1658 120 65 105 chr3 21080643 21080994 -196956164 - MER1B DNA MER1_type 0 337 1 1553 197 0 7 chr3 21081338 21081617 -196955541 + AluJo SINE Alu 2 278 -34 323 211 11 0 chr3 21081633 21081723 -196955435 + GA-rich Low_complexity Low_complexity 2 92 0 839 163 0 0 chr3 21082867 21082996 -196954162 - FLAM_C SINE Alu -4 129 1 742 184 0 0 chr3 21083088 21083213 -196953945 + AluJb SINE Alu 1 125 -187 628 278 72 12 chr3 21083753 21084084 -196953074 - L1MEc LINE L1 -4579 1682 1332 331 200 0 0 chr3 21084221 21084286 -196952872 - AluJ/FLAM SINE Alu -211 91 27 319 321 42 37 chr3 21084299 21084446 -196952712 - L1MEc LINE L1 -4885 1185 1035 827 147 0 37 chr3 21084446 21084582 -196952576 - FLAM_C SINE Alu -2 131 1 319 321 42 37 chr3 21084582 21084624 -196952534 - L1MEc LINE L1 -5035 1035 995 304 270 101 11 chr3 21084651 21084829 -196952329 - L1MEc LINE L1 -5069 1001 808 2158 105 7 3 chr3 21085213 21085507 -196951651 + AluSg SINE Alu 1 295 -15 2066 116 0 14 chr3 21086656 21086948 -196950210 - AluSx SINE Alu -24 288 1 21 0 0 0 chr3 21086949 21086970 -196950188 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 29 chr3 21087083 21087094 -196950064 + AT_rich Low_complexity Low_complexity 1 11 -22 1881 155 48 0 chr3 21087094 21087385 -196949773 - AluSx SINE Alu -7 305 1 23 0 0 29 chr3 21087385 21087407 -196949751 + AT_rich Low_complexity Low_complexity 11 33 0 663 184 8 8 chr3 21087418 21087543 -196949615 + AluJb SINE Alu 2 126 -186 196 161 32 16 chr3 21087549 21087611 -196949547 + A-rich Low_complexity Low_complexity 4 66 0 574 285 45 32 chr3 21088199 21088420 -196948738 - MIR SINE MIR -26 236 13 381 182 26 0 chr3 21088700 21088777 -196948381 + AluSg/x SINE Alu 219 297 -3 2311 122 0 0 chr3 21089127 21089439 -196947719 + AluSx SINE Alu 1 312 0 929 176 0 108 chr3 21089555 21089805 -196947353 + AluJb SINE Alu 90 312 0 2590 49 0 7 chr3 21090089 21090396 -196946762 - AluYa5 SINE Alu -6 305 1 23 0 0 0 chr3 21091579 21091602 -196945556 + AT_rich Low_complexity Low_complexity 1 23 0 1121 187 123 30 chr3 21091619 21091644 -196945514 - AluJo SINE Alu -9 293 272 1760 73 0 0 chr3 21091644 21091862 -196945296 + AluY SINE Alu 84 301 -10 1121 187 123 30 chr3 21091862 21092104 -196945054 - AluJo SINE Alu -30 272 1 2353 80 0 13 chr3 21092580 21092893 -196944265 - AluY SINE Alu -2 309 1 1251 152 0 0 chr3 21093028 21093206 -196943952 + AluSg/x SINE Alu 117 294 -16 522 199 0 43 chr3 21093561 21093669 -196943489 - Charlie1 DNA MER1_type -5 2756 2654 1814 192 49 0 chr3 21093669 21094018 -196943140 - MER47A DNA MER2_type 0 366 1 522 199 0 43 chr3 21094018 21094050 -196943108 - Charlie1 DNA MER1_type -107 2654 2622 * 575 219 33 13 chr3 21094048 21094199 -196942959 - Charlie1 DNA MER1_type -2541 220 67 214 243 117 39 chr3 21094572 21094675 -196942483 - L3 LINE CR1 -322 1255 1145 943 108 0 0 chr3 21095038 21095167 -196941991 - FLAM_C SINE Alu -4 129 1 253 222 16 0 chr3 21095195 21095258 -196941900 + FLAM_A SINE Alu 69 132 -1 504 213 0 41 chr3 21095644 21095766 -196941392 - FRAM SINE Alu -16 160 44 1074 176 38 86 chr3 21095892 21096159 -196940999 - AluJb SINE Alu -15 297 44 2103 133 0 0 chr3 21096397 21096698 -196940460 + AluSx SINE Alu 1 301 -11 1548 185 3 55 chr3 21096699 21097007 -196940151 - AluJo SINE Alu -20 292 1 1373 211 39 3 chr3 21097011 21097296 -196939862 - AluJo SINE Alu -6 296 2 395 251 66 33 chr3 21097663 21097906 -196939252 - L1ME3A LINE L1 -270 5900 5650 183 188 0 0 chr3 21097909 21097941 -196939217 + MER5C DNA MER1_type 1 32 -292 1433 194 86 0 chr3 21098139 21098294 -196938864 - AluJb SINE Alu -10 302 162 185 0 40 0 chr3 21098294 21098319 -196938839 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1433 194 86 0 chr3 21098319 21098441 -196938717 - AluJb SINE Alu -150 162 1 240 59 0 0 chr3 21098582 21098616 -196938542 + (TTG)n Simple_repeat Simple_repeat 1 34 0 2072 115 0 0 chr3 21098617 21098896 -196938262 - AluSx SINE Alu -32 280 2 441 254 193 33 chr3 21098903 21099116 -196938042 - L1ME3A LINE L1 -751 5395 5149 1462 189 8 11 chr3 21099135 21099400 -196937758 + AluJo SINE Alu 5 268 -44 599 355 81 24 chr3 21099504 21099692 -196937466 - L1ME3A LINE L1 -1768 4378 4202 1831 175 7 0 chr3 21099692 21100000 -196937158 - AluJb SINE Alu -2 310 1 599 355 81 24 chr3 21100000 21100267 -196936891 - L1ME3A LINE L1 -1944 4202 3897 489 271 64 61 chr3 21100435 21100996 -196936162 - L1ME3A LINE L1 -2467 3679 3117 251 281 22 22 chr3 21101149 21101288 -196935870 - L1ME3A LINE L1 -3330 2816 2678 396 0 0 0 chr3 21101445 21101489 -196935669 + (TTGG)n Simple_repeat Simple_repeat 2 45 0 2002 127 0 7 chr3 21101489 21101773 -196935385 - AluSg SINE Alu -28 282 1 21 36 0 0 chr3 21102007 21102035 -196935123 + AT_rich Low_complexity Low_complexity 1 28 0 689 250 122 44 chr3 21102049 21102369 -196934789 - L1ME3A LINE L1 -26 6144 5800 2418 81 7 3 chr3 21102813 21103120 -196934038 + AluY SINE Alu 1 308 -3 366 228 96 32 chr3 21103167 21103417 -196933741 + L1M4 LINE L1 3745 4010 -2136 390 258 159 34 chr3 21103542 21103775 -196933383 + L1M4 LINE L1 4224 4485 -1661 858 288 66 22 chr3 21103784 21104239 -196932919 + L1M4 LINE L1 4635 5109 -1037 262 181 12 72 chr3 21104604 21104770 -196932388 + (TATATG)n Simple_repeat Simple_repeat 5 160 0 2114 141 0 19 chr3 21105599 21105912 -196931246 - AluSx SINE Alu -5 307 1 1992 125 3 16 chr3 21106620 21106924 -196930234 + AluSx SINE Alu 1 300 -12 985 156 82 130 chr3 21107562 21107701 -196929457 + AluJo SINE Alu 1 145 -167 1546 168 31 31 chr3 21107701 21107987 -196929171 - AluJo SINE Alu -26 286 1 1857 131 0 55 chr3 21107994 21108322 -196928836 - AluSx SINE Alu -2 310 1 985 156 82 130 chr3 21108322 21108444 -196928714 + AluJo SINE Alu 151 257 -55 21 36 0 0 chr3 21108472 21108500 -196928658 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr3 21108588 21108613 -196928545 + AT_rich Low_complexity Low_complexity 1 25 0 2380 77 0 7 chr3 21108887 21109186 -196927972 - AluY SINE Alu -14 297 1 346 115 16 0 chr3 21109205 21109266 -196927892 - MER50 LTR ERV1 -174 560 499 1815 172 0 0 chr3 21109722 21110013 -196927145 + AluJo SINE Alu 1 291 -21 2397 80 0 10 chr3 21110130 21110431 -196926727 + AluSc SINE Alu 2 299 -10 21 36 0 0 chr3 21110831 21110859 -196926299 + AT_rich Low_complexity Low_complexity 1 28 0 275 238 109 0 chr3 21110921 21111022 -196926136 - MIR SINE MIR -12 250 139 1504 129 0 0 chr3 21111257 21111459 -196925699 - AluSx SINE Alu -110 202 1 1869 174 0 3 chr3 21112116 21112420 -196924738 + AluSx SINE Alu 1 303 -9 372 207 180 9 chr3 21112438 21112549 -196924609 + L1 LINE L1 4195 4324 -1822 1579 191 0 30 chr3 21112679 21112983 -196924175 + AluJo SINE Alu 1 295 -17 1761 117 0 119 chr3 21113162 21113528 -196923630 - AluJo SINE Alu 0 325 1 888 161 0 0 chr3 21113890 21114027 -196923131 - AluJo SINE Alu -175 137 1 1966 165 0 0 chr3 21114066 21114363 -196922795 + AluSx SINE Alu 1 297 -15 2267 105 0 0 chr3 21114491 21114802 -196922356 + AluSx SINE Alu 1 311 0 2253 100 0 3 chr3 21115122 21115411 -196921747 + AluSx SINE Alu 1 288 -24 205 290 0 0 chr3 21116153 21116222 -196920936 - L3 LINE CR1 -890 687 619 2375 86 3 0 chr3 21117038 21117373 -196919785 + AluSp SINE Alu 1 336 0 359 314 33 33 chr3 21117619 21117829 -196919329 - MIR SINE MIR -32 230 21 2192 83 14 0 chr3 21118128 21118457 -196918701 + AluY SINE Alu 1 333 0 1178 182 147 23 chr3 21118518 21118776 -196918382 - AluJb SINE Alu -8 294 5 1999 142 3 0 chr3 21119169 21119458 -196917700 + AluSx SINE Alu 1 290 -22 1255 181 0 5 chr3 21119682 21119905 -196917253 + AluSg/x SINE Alu 85 306 0 1407 312 129 21 chr3 21119945 21120887 -196916271 + L2 LINE L2 1847 2890 -424 2208 108 10 10 chr3 21121221 21121527 -196915631 + AluSx SINE Alu 1 306 -6 435 241 152 0 chr3 21121922 21122034 -196915124 + FLAM_A SINE Alu 1 129 -4 729 222 59 82 chr3 21122319 21122650 -196914508 + L1MC5 LINE L1 7306 7628 -333 2184 122 0 10 chr3 21122650 21122954 -196914204 - AluJb SINE Alu -11 301 1 729 222 59 82 chr3 21122954 21123010 -196914148 + L1MC5 LINE L1 7628 7684 -277 822 167 118 48 chr3 21123021 21123249 -196913909 + AluJo SINE Alu 63 306 -6 2003 122 40 0 chr3 21123249 21123527 -196913631 + AluSx SINE Alu 1 289 -23 238 254 64 9 chr3 21123545 21123655 -196913503 + L1MC5 LINE L1 7709 7824 -137 * 794 139 63 57 chr3 21123646 21123804 -196913354 + L1PB1 LINE L1 5993 6151 0 37 0 0 0 chr3 21123976 21124013 -196913145 + AT_rich Low_complexity Low_complexity 1 37 0 2227 76 14 7 chr3 21124013 21124301 -196912857 - AluY SINE Alu -21 290 1 2179 128 7 3 chr3 21124306 21124611 -196912547 - AluSq SINE Alu -7 306 1 1859 167 0 31 chr3 21124611 21124927 -196912231 - AluSx SINE Alu -5 307 1 2240 110 0 7 chr3 21125119 21125420 -196911738 - AluSq SINE Alu -13 300 2 2050 260 99 12 chr3 21125440 21126079 -196911079 - MER44D DNA MER2_type -1 604 39 21 36 0 0 chr3 21126081 21126109 -196911049 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 21126232 21126254 -196910904 + AT_rich Low_complexity Low_complexity 1 22 0 2077 114 4 4 chr3 21126256 21126537 -196910621 + AluSg1 SINE Alu 1 281 -28 188 33 0 33 chr3 21126545 21126575 -196910583 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1574 191 30 20 chr3 21127382 21127685 -196909473 + AluJb SINE Alu 1 306 -6 805 238 0 6 chr3 21128274 21128446 -196908712 - AluJo SINE Alu -140 172 2 464 291 0 28 chr3 21128448 21128589 -196908569 - FRAM SINE Alu -22 154 18 2449 86 0 0 chr3 21128656 21128959 -196908199 + AluSp SINE Alu 1 303 -10 21 0 0 0 chr3 21129241 21129262 -196907896 + AT_rich Low_complexity Low_complexity 1 21 0 207 307 44 44 chr3 21129383 21129497 -196907661 + L3 LINE CR1 985 1098 -479 1388 170 4 13 chr3 21129607 21129837 -196907321 + AluJo SINE Alu 2 229 -83 511 276 0 0 chr3 21130753 21130869 -196906289 + FLAM_A SINE Alu 1 116 -17 186 43 0 0 chr3 21130873 21130896 -196906262 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 2225 124 0 0 chr3 21132010 21132309 -196904849 + AluSq SINE Alu 1 299 -14 2103 119 3 0 chr3 21132397 21132683 -196904475 + AluSx SINE Alu 2 288 -24 1834 80 13 0 chr3 21133419 21133645 -196903513 + AluSg SINE Alu 1 229 -81 856 212 10 56 chr3 21133645 21133843 -196903315 + AluJo SINE Alu 90 278 -34 1902 175 0 0 chr3 21134344 21134641 -196902517 - AluJb SINE Alu -15 297 1 2122 139 3 0 chr3 21134997 21135299 -196901859 + AluSx SINE Alu 1 303 -9 585 252 8 0 chr3 21135740 21135863 -196901295 + MLT1A1 LTR MaLR 19 142 -223 652 229 0 14 chr3 21135863 21136003 -196901155 + FRAM SINE Alu 1 136 -40 1950 121 20 7 chr3 21136165 21136463 -196900695 + AluSx SINE Alu 3 304 -8 1960 151 0 7 chr3 21136466 21136757 -196900401 + AluSx SINE Alu 5 293 -19 2116 112 0 11 chr3 21136768 21137091 -196900067 + AluSx SINE Alu 1 320 0 327 250 0 23 chr3 21137091 21137179 -196899979 + L1M4 LINE L1 2648 2733 -3413 346 203 145 100 chr3 21137704 21137945 -196899213 + L1MC4 LINE L1 7779 8030 -12 2301 104 0 3 chr3 21137968 21138276 -196898882 + AluSx SINE Alu 1 307 -5 652 159 0 48 chr3 21138318 21138444 -196898714 + FLAM_C SINE Alu 24 143 0 2092 121 0 7 chr3 21138512 21138817 -196898341 + AluSg SINE Alu 1 303 0 946 206 20 53 chr3 21139215 21139462 -196897696 + AluJb SINE Alu 1 239 -73 1882 134 65 0 chr3 21139779 21140070 -196897088 + AluSg SINE Alu 1 310 0 2296 77 16 19 chr3 21140147 21140458 -196896700 + AluSq SINE Alu 1 310 -3 213 196 10 108 chr3 21140867 21140925 -196896233 - MIR SINE MIR -50 212 167 2421 75 0 0 chr3 21140925 21141218 -196895940 - AluSc SINE Alu -16 293 1 213 196 10 108 chr3 21141218 21141261 -196895897 - MIR SINE MIR -95 167 121 281 236 34 0 chr3 21141269 21141358 -196895800 + L1MEd LINE L1 13 104 -6015 402 144 27 16 chr3 21141496 21141599 -196895559 - AluS SINE Alu -239 62 1 306 233 58 34 chr3 21141834 21141921 -196895237 + L1MB3 LINE L1 5942 6030 -145 609 195 0 16 chr3 21141941 21142064 -196895094 + FLAM_C SINE Alu 22 142 -1 1705 140 53 4 chr3 21142074 21142338 -196894820 + AluSx SINE Alu 22 298 -14 36 0 0 0 chr3 21142375 21142411 -196894747 + AT_rich Low_complexity Low_complexity 1 36 0 1610 184 0 21 chr3 21142411 21142694 -196894464 + AluJb SINE Alu 1 277 -35 189 0 0 0 chr3 21142703 21142724 -196894434 + (CA)n Simple_repeat Simple_repeat 2 22 0 324 48 0 0 chr3 21142757 21142799 -196894359 + (GA)n Simple_repeat Simple_repeat 2 43 0 2404 76 0 0 chr3 21142843 21143134 -196894024 + AluY SINE Alu 11 301 -10 2295 91 13 10 chr3 21143187 21143495 -196893663 + AluY SINE Alu 1 309 -2 591 115 0 21 chr3 21143511 21143607 -196893551 - AluSp/q SINE Alu 0 313 220 225 0 0 0 chr3 21143776 21143801 -196893357 + (A)n Simple_repeat Simple_repeat 1 25 0 694 247 12 6 chr3 21143823 21143989 -196893169 + FAM SINE Alu 2 168 -7 1855 121 89 11 chr3 21143989 21144269 -196892889 + AluSq SINE Alu 1 302 -11 597 145 237 93 chr3 21144289 21144362 -196892796 + L1MB2 LINE L1 5727 5788 -393 2193 106 0 7 chr3 21144362 21144654 -196892504 - AluSg SINE Alu -20 290 1 2050 131 0 10 chr3 21144656 21144953 -196892205 - AluSx SINE Alu -18 294 1 597 145 237 93 chr3 21144953 21145110 -196892048 + L1MB2 LINE L1 5788 5990 -191 * 626 222 118 0 chr3 21145105 21145249 -196891909 - L1MB3 LINE L1 -229 5954 5794 585 227 16 15 chr3 21145251 21145407 -196891751 + L1MB2 LINE L1 6005 6162 -6 1100 89 0 20 chr3 21145954 21146100 -196891058 + AluSq/x SINE Alu 1 143 -169 2112 108 4 4 chr3 21146104 21146382 -196890776 + AluSg SINE Alu 3 280 -30 339 220 0 0 chr3 21147073 21147132 -196890026 + AluJ/FRAM SINE Alu 221 279 -23 444 37 0 0 chr3 21147132 21147186 -196889972 + (CA)n Simple_repeat Simple_repeat 1 54 0 1482 153 4 4 chr3 21147189 21147418 -196889740 + AluJb SINE Alu 71 299 -13 2099 110 31 0 chr3 21147423 21147715 -196889443 + AluSc SINE Alu 1 301 -8 487 280 76 16 chr3 21147715 21147955 -196889203 + L1M4c LINE L1 1535 1879 -884 2139 111 9 19 chr3 21147955 21148270 -196888888 + AluSx SINE Alu 1 312 0 487 280 76 16 chr3 21148270 21148301 -196888857 + L1M4c LINE L1 1879 1907 -856 312 180 0 16 chr3 21148459 21148520 -196888638 - MLT1L LTR MaLR 0 615 556 2165 93 73 0 chr3 21148522 21148811 -196888347 + AluSx SINE Alu 1 310 -2 2357 93 0 7 chr3 21148824 21149126 -196888032 + AluSq SINE Alu 8 307 -6 1837 137 20 13 chr3 21149196 21149495 -196887663 + AluSx SINE Alu 1 301 -11 542 228 104 89 chr3 21149496 21149545 -196887613 + L1MC4 LINE L1 7531 7578 -464 2028 133 3 7 chr3 21149545 21149846 -196887312 + AluSx SINE Alu 1 300 -12 542 228 104 89 chr3 21149846 21149874 -196887284 + L1MC4 LINE L1 7578 7604 -438 1496 213 0 20 chr3 21149874 21150015 -196887143 + AluJo SINE Alu 1 143 -169 2166 117 0 0 chr3 21150015 21150321 -196886837 + AluSx SINE Alu 1 306 0 1496 213 0 20 chr3 21150321 21150478 -196886680 + AluJo SINE Alu 143 294 -18 542 228 104 89 chr3 21150478 21150658 -196886500 + L1MC4 LINE L1 7604 7793 -249 1841 119 101 0 chr3 21150978 21151246 -196885912 - AluSx SINE Alu -17 295 1 255 241 0 17 chr3 21151664 21151722 -196885436 + MARNA DNA Mariner 251 307 -279 1126 117 0 0 chr3 21151804 21151949 -196885209 + AluSq/x SINE Alu 1 145 -168 2565 66 0 0 chr3 21151949 21152251 -196884907 + AluY SINE Alu 1 302 -9 779 188 0 0 chr3 21152343 21152476 -196884682 - FLAM_C SINE Alu 0 133 1 2497 55 3 7 chr3 21152762 21153070 -196884088 - AluY SINE Alu -4 307 1 1624 114 0 0 chr3 21153172 21153391 -196883767 - AluSc SINE Alu -2 307 89 2357 66 0 7 chr3 21153404 21153707 -196883451 - AluY SINE Alu 0 311 11 763 100 0 0 chr3 21153707 21153807 -196883351 - AluSg/x SINE Alu -79 233 134 2260 109 3 0 chr3 21153807 21154111 -196883047 - AluSp SINE Alu -7 306 2 2222 109 0 7 chr3 21154266 21154569 -196882589 - AluSg SINE Alu -9 301 1 618 159 0 37 chr3 21154575 21154720 -196882438 - AluSg/x SINE Alu 0 310 189 590 238 63 0 chr3 21154763 21154906 -196882252 + AluSg/x SINE Alu 76 227 -83 2177 111 7 0 chr3 21154909 21155198 -196881960 - AluSx SINE Alu -21 291 1 1597 164 0 103 chr3 21155201 21155370 -196881788 - AluJb SINE Alu -12 300 115 2558 54 0 0 chr3 21155370 21155664 -196881494 - AluY SINE Alu -17 294 1 1597 164 0 103 chr3 21155664 21155685 -196881473 - AluJb SINE Alu -197 115 93 2461 90 0 0 chr3 21155685 21155997 -196881161 - AluSx SINE Alu 0 312 1 1597 164 0 103 chr3 21155997 21156135 -196881023 - AluJb SINE Alu -219 93 5 649 200 0 0 chr3 21156140 21156255 -196880903 + MER58A DNA MER1_type 42 156 0 2461 92 0 0 chr3 21156304 21156607 -196880551 - AluSc SINE Alu -6 303 1 2269 117 3 3 chr3 21156607 21156916 -196880242 - AluSq SINE Alu -4 309 1 297 221 0 0 chr3 21156921 21156989 -196880169 + Charlie2 DNA MER1_type 1817 1884 -978 1855 157 27 0 chr3 21157011 21157311 -196879847 - AluSx SINE Alu -4 308 1 411 190 13 0 chr3 21157322 21157401 -196879757 - FLAM_A SINE Alu -22 120 41 647 243 169 23 chr3 21157428 21157729 -196879429 - L1ME2 LINE L1 -10 6154 5810 358 167 0 0 chr3 21157743 21157803 -196879355 - L1ME2 LINE L1 -833 5313 5254 877 157 13 7 chr3 21157803 21157956 -196879202 - AluSq SINE Alu -16 297 144 2042 111 57 3 chr3 21158190 21158487 -196878671 + AluSq SINE Alu 1 313 0 1433 156 70 30 chr3 21158545 21158749 -196878409 - AluJb SINE Alu 0 330 109 180 0 0 0 chr3 21158749 21158769 -196878389 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1433 156 70 30 chr3 21158769 21158883 -196878275 - AluJb SINE Alu -221 109 1 21 57 0 0 chr3 21158910 21158945 -196878213 + AT_rich Low_complexity Low_complexity 1 35 0 1855 151 20 3 chr3 21158977 21159269 -196877889 + AluJo SINE Alu 1 297 -15 279 226 157 35 chr3 21159281 21159396 -196877762 + MIR SINE MIR 117 245 -17 210 239 65 0 chr3 21159368 21159414 -196877744 + L2 LINE L2 3222 3270 -2 * 658 140 0 18 chr3 21159416 21159530 -196877628 + FRAM SINE Alu 65 176 0 1932 115 15 0 chr3 21160428 21160698 -196876460 - AluSx SINE Alu 0 312 39 304 196 0 76 chr3 21160852 21160944 -196876214 - L2 LINE L2 -1 3312 3228 25 31 0 0 chr3 21161718 21161750 -196875408 + GC_rich Low_complexity Low_complexity 1 32 0 223 295 9 19 chr3 21161985 21162090 -196875068 + (CCG)n Simple_repeat Simple_repeat 2 105 0 208 302 11 44 chr3 21162037 21162219 -196874939 + C-rich Low_complexity Low_complexity 3 178 0 * 228 299 248 6 chr3 21162854 21163011 -196874147 + L2 LINE L2 3119 3313 0 1443 152 47 19 chr3 21163070 21163326 -196873832 + AluJb SINE Alu 33 295 -17 304 116 0 0 chr3 21163450 21163493 -196873665 + MER4E LTR ERV1 652 694 -72 21 0 0 0 chr3 21163495 21163516 -196873642 + AT_rich Low_complexity Low_complexity 1 21 0 2195 100 3 10 chr3 21163538 21163829 -196873329 + AluSg SINE Alu 1 289 -21 1183 210 91 30 chr3 21163830 21164256 -196872902 - L1MC4 LINE L1 0 8042 7501 403 210 161 0 chr3 21164262 21164405 -196872753 - L1MC4 LINE L1 -597 7445 7280 587 192 0 48 chr3 21164405 21164530 -196872628 - AluJb SINE Alu -6 306 188 2609 71 0 0 chr3 21164553 21164861 -196872297 + AluY SINE Alu 1 308 -3 2123 115 7 7 chr3 21164870 21165165 -196871993 + AluSp SINE Alu 1 295 -18 2043 112 3 40 chr3 21165185 21165320 -196871838 + AluSx SINE Alu 1 139 -173 2125 119 0 13 chr3 21165320 21165622 -196871536 + AluSx SINE Alu 1 298 -14 2043 112 3 40 chr3 21165622 21165789 -196871369 + AluSx SINE Alu 139 292 -20 293 243 13 1 chr3 21165872 21165961 -196871197 - L1MC4 LINE L1 -1288 6537 6432 2186 112 10 10 chr3 21166139 21166271 -196870887 + AluSx SINE Alu 1 132 -180 2212 130 0 0 chr3 21166271 21166578 -196870580 + AluSg SINE Alu 1 307 -3 2186 112 10 10 chr3 21166578 21166741 -196870417 + AluSx SINE Alu 131 296 -16 1472 182 54 11 chr3 21166750 21167030 -196870128 + AluJb SINE Alu 1 292 -20 1814 157 3 46 chr3 21167084 21167267 -196869891 - AluJb SINE Alu -2 310 121 225 108 0 0 chr3 21167267 21167304 -196869854 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2188 84 7 11 chr3 21167304 21167584 -196869574 - AluY SINE Alu -32 279 1 1814 157 3 46 chr3 21167584 21167729 -196869429 - AluJb SINE Alu -189 123 1 452 223 36 54 chr3 21167799 21167923 -196869235 - L1M4 LINE L1 -2537 3609 3487 2230 125 3 0 chr3 21167923 21168220 -196868938 - AluSx SINE Alu -14 298 1 452 223 36 54 chr3 21168220 21168261 -196868897 - L1M4 LINE L1 -2659 3487 3447 1128 154 0 0 chr3 21168265 21168434 -196868724 - AluSc SINE Alu -9 300 132 2401 88 0 31 chr3 21168434 21168754 -196868404 - AluSp SINE Alu -3 310 1 1633 185 3 14 chr3 21168766 21169058 -196868100 - AluJo SINE Alu -13 299 11 1229 156 120 58 chr3 21169070 21169232 -196867926 - MER74A LTR ERVL -250 308 121 2453 72 0 10 chr3 21169232 21169538 -196867620 - AluY SINE Alu -8 303 1 1229 156 120 58 chr3 21169538 21169650 -196867508 - MER74A LTR ERVL -437 121 17 868 179 49 19 chr3 21169892 21169907 -196867251 + AluSg/x SINE Alu 119 132 -178 2056 156 0 0 chr3 21169907 21170208 -196866950 + AluSx SINE Alu 1 301 -11 868 179 49 19 chr3 21170208 21170354 -196866804 + AluSg/x SINE Alu 132 285 -25 2125 105 17 0 chr3 21170367 21170663 -196866495 + AluY SINE Alu 1 301 -10 1163 260 70 52 chr3 21170692 21170723 -196866435 + L1ME LINE L1 4992 5021 -1149 2085 117 0 29 chr3 21170723 21170857 -196866301 + AluSg SINE Alu 1 137 -173 2297 113 3 0 chr3 21170857 21171166 -196865992 + AluSg SINE Alu 1 310 0 2085 117 0 29 chr3 21171166 21171339 -196865819 + AluSg SINE Alu 137 299 -11 1163 260 70 52 chr3 21171339 21171398 -196865760 + L1ME LINE L1 5021 5077 -1093 2526 76 3 0 chr3 21171398 21171702 -196865456 + AluSp SINE Alu 1 305 -8 1163 260 70 52 chr3 21171702 21171771 -196865387 + L1ME LINE L1 5077 5143 -1027 616 284 98 0 chr3 21171771 21171975 -196865183 + MER58A DNA MER1_type 1 224 0 1163 260 70 52 chr3 21171975 21172115 -196865043 + L1ME LINE L1 5143 5279 -891 1782 183 10 10 chr3 21172115 21172427 -196864731 + AluJo SINE Alu 1 312 0 1163 260 70 52 chr3 21172427 21172641 -196864517 + L1ME LINE L1 5279 5488 -682 2294 101 0 25 chr3 21172641 21172958 -196864200 + AluY SINE Alu 1 309 -2 1163 260 70 52 chr3 21172958 21173251 -196863907 + L1ME LINE L1 5488 5812 -358 1299 208 0 4 chr3 21173289 21173530 -196863628 - AluJo SINE Alu -35 277 38 448 229 25 34 chr3 21173572 21173690 -196863468 + AluJb SINE Alu 179 295 -17 450 184 68 150 chr3 21173691 21173838 -196863320 + MER58B DNA MER1_type 177 311 -30 29 0 0 0 chr3 21173857 21173886 -196863272 + AT_rich Low_complexity Low_complexity 1 29 0 1938 116 70 7 chr3 21173899 21174184 -196862974 + AluSx SINE Alu 1 303 -9 2195 114 7 0 chr3 21174184 21174483 -196862675 + AluSx SINE Alu 1 301 -11 571 279 65 4 chr3 21174517 21174746 -196862412 + L1MC5 LINE L1 7637 7879 -82 478 173 36 45 chr3 21174746 21174856 -196862302 - LTR40a LTR ERVL 0 519 411 198 0 0 0 chr3 21174856 21174878 -196862280 + (CAAAA)n Simple_repeat Simple_repeat 5 26 0 1227 180 19 0 chr3 21174895 21175106 -196862052 + AluJb SINE Alu 83 297 -15 2144 126 7 0 chr3 21175107 21175408 -196861750 + AluSx SINE Alu 2 304 -8 705 222 0 47 chr3 21175408 21175579 -196861579 + AluJo/FRAM SINE Alu 137 299 -3 2154 113 13 10 chr3 21175627 21175929 -196861229 - AluSx SINE Alu -9 303 1 765 184 63 76 chr3 21175973 21176196 -196860962 + MLT1B LTR MaLR 1 220 -170 1644 175 4 11 chr3 21176208 21176476 -196860682 - AluJb SINE Alu -38 274 9 2282 122 0 0 chr3 21176488 21176799 -196860359 - AluSx SINE Alu -1 311 1 1584 180 6 42 chr3 21176799 21176917 -196860241 - AluJb SINE Alu -9 303 182 2391 100 3 0 chr3 21176917 21177216 -196859942 - AluSg SINE Alu -10 300 1 1584 180 6 42 chr3 21177216 21177408 -196859750 - AluJb SINE Alu -130 182 4 2202 96 11 0 chr3 21177489 21177801 -196859357 - AluSp SINE Alu 0 315 1 1974 161 3 3 chr3 21177821 21178125 -196859033 + AluJb SINE Alu 1 304 -8 2023 142 7 3 chr3 21178526 21178822 -196858336 + AluSx SINE Alu 1 297 -15 2236 90 20 10 chr3 21179433 21179732 -196857426 - AluSq SINE Alu -11 302 1 23 68 0 0 chr3 21180923 21180967 -196856191 + GC_rich Low_complexity Low_complexity 1 44 0 2301 85 0 0 chr3 21181759 21182061 -196855097 + AluSq SINE Alu 1 302 0 420 237 127 29 chr3 21182195 21182368 -196854790 + MIR SINE MIR 7 196 -66 2229 98 0 7 chr3 21183019 21183327 -196853831 - AluSx SINE Alu 0 306 1 1563 150 44 44 chr3 21183486 21183621 -196853537 - AluSx SINE Alu -18 294 160 2324 104 0 3 chr3 21183621 21183928 -196853230 - AluSg SINE Alu -4 306 1 2310 102 0 3 chr3 21183930 21184224 -196852934 - AluSg SINE Alu -10 300 8 1563 150 44 44 chr3 21184224 21184379 -196852779 - AluSx SINE Alu -152 160 1 2296 101 3 10 chr3 21184385 21184691 -196852467 - AluSp SINE Alu -6 307 4 1935 154 3 20 chr3 21184697 21185002 -196852156 - AluJo SINE Alu -12 300 1 2316 111 0 3 chr3 21185054 21185361 -196851797 - AluSx SINE Alu -6 306 1 1637 82 23 14 chr3 21185364 21185583 -196851575 - AluSq SINE Alu -4 309 89 2582 58 0 10 chr3 21185716 21186028 -196851130 - AluY SINE Alu -2 309 1 2101 113 0 17 chr3 21187437 21187738 -196849420 - AluSx SINE Alu -16 296 1 335 346 79 26 chr3 21187770 21187998 -196849160 + L2 LINE L2 3024 3263 -9 1456 128 8 12 chr3 21188011 21188262 -196848896 - MSTA LTR MaLR 0 428 179 2041 118 10 7 chr3 21188266 21188562 -196848596 + AluSx SINE Alu 1 297 -15 211 338 73 59 chr3 21188749 21188953 -196848205 - L2 LINE L2 -35 3237 3031 2189 103 0 3 chr3 21189001 21189308 -196847850 - AluSc SINE Alu 0 306 1 2463 80 0 3 chr3 21189361 21189660 -196847498 - AluSc SINE Alu -11 298 1 543 229 93 0 chr3 21189710 21189850 -196847308 - L1MC5 LINE L1 -67 7894 7742 2638 71 0 0 chr3 21189989 21190300 -196846858 - AluSx SINE Alu 0 312 2 854 173 0 0 chr3 21190457 21190590 -196846568 - AluJb SINE Alu -179 133 1 28 48 0 0 chr3 21190938 21190980 -196846178 + GC_rich Low_complexity Low_complexity 1 42 0 290 392 0 0 chr3 21192611 21192769 -196844389 + G-rich Low_complexity Low_complexity 1 158 0 348 411 0 0 chr3 21192796 21192964 -196844194 + G-rich Low_complexity Low_complexity 1 168 0 24 0 0 0 chr3 21192995 21193019 -196844139 + GC_rich Low_complexity Low_complexity 1 24 0 611 198 0 0 chr3 21193166 21193277 -196843881 - AluJb SINE Alu -200 112 2 620 136 0 9 chr3 21193287 21193397 -196843761 + FLAM_C SINE Alu 32 140 -3 539 175 0 61 chr3 21193489 21193603 -196843555 - AluJb SINE Alu -205 107 1 25 31 0 0 chr3 21193606 21193638 -196843520 + AT_rich Low_complexity Low_complexity 1 32 0 1778 159 17 10 chr3 21193695 21193985 -196843173 - AluJo SINE Alu -20 292 1 1305 221 14 18 chr3 21194021 21194302 -196842856 - AluJo SINE Alu -32 280 1 201 155 17 35 chr3 21194380 21194438 -196842720 + (TAAA)n Simple_repeat Simple_repeat 2 58 0 2385 97 3 0 chr3 21194936 21195245 -196841913 + AluSp SINE Alu 1 310 -3 2290 111 0 0 chr3 21195702 21195999 -196841159 - AluSx SINE Alu -15 297 1 289 105 0 0 chr3 21196047 21196085 -196841073 + MER4E LTR ERV1 667 704 -75 1654 163 10 49 chr3 21196250 21196557 -196840601 + AluJb SINE Alu 1 295 -17 1675 65 19 14 chr3 21196869 21197084 -196840074 + AluY SINE Alu 1 216 -95 27 92 0 0 chr3 21197765 21197841 -196839317 + GC_rich Low_complexity Low_complexity 1 76 0 270 227 0 0 chr3 21197864 21197939 -196839219 + A-rich Low_complexity Low_complexity 1 75 0 2101 113 0 17 chr3 21199244 21199545 -196837613 - AluSx SINE Alu -16 296 1 335 346 79 26 chr3 21199577 21199805 -196837353 + L2 LINE L2 3024 3263 -9 1456 128 8 12 chr3 21199818 21200069 -196837089 - MSTA LTR MaLR 0 428 179 2214 113 3 3 chr3 21200073 21200373 -196836785 + AluSx SINE Alu 1 300 -12 1182 101 19 0 chr3 21200374 21200533 -196836625 + AluY SINE Alu 136 297 -14 189 0 0 0 chr3 21201069 21201090 -196836068 + (T)n Simple_repeat Simple_repeat 1 21 0 2116 93 45 45 chr3 21201320 21201632 -196835526 + AluSx SINE Alu 1 312 0 643 193 9 0 chr3 21201650 21201764 -196835394 + FLAM_C SINE Alu 3 117 -26 1808 99 0 0 chr3 21201775 21201997 -196835161 - AluY SINE Alu -89 222 1 183 100 0 0 chr3 21202012 21202042 -196835116 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 802 184 0 0 chr3 21202065 21202201 -196834957 - AluJo SINE Alu -176 136 1 243 0 0 0 chr3 21202902 21202929 -196834229 + (A)n Simple_repeat Simple_repeat 1 27 0 2494 73 0 0 chr3 21203531 21203833 -196833325 - AluSc SINE Alu -7 302 1 22 0 0 0 chr3 21204086 21204108 -196833050 + AT_rich Low_complexity Low_complexity 1 22 0 2364 98 0 3 chr3 21207208 21207503 -196829655 + AluSx SINE Alu 1 294 -18 1969 149 0 34 chr3 21208086 21208124 -196829034 - AluSx SINE Alu 0 312 274 225 0 0 0 chr3 21208124 21208149 -196829009 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1969 149 0 34 chr3 21208149 21208433 -196828725 - AluSx SINE Alu -38 274 1 2235 106 7 10 chr3 21208444 21208746 -196828412 - AluSp SINE Alu -12 301 1 2056 123 7 7 chr3 21208792 21209076 -196828082 - AluSx SINE Alu -28 284 1 866 221 26 40 chr3 21209094 21209320 -196827838 - MER58A DNA MER1_type -1 223 1 1962 133 29 80 chr3 21209489 21209682 -196827476 - THE1B LTR MaLR 0 364 163 2303 127 0 0 chr3 21209682 21209989 -196827169 + AluSg SINE Alu 1 307 -3 2520 90 0 0 chr3 21209989 21210300 -196826858 + AluY SINE Alu 1 311 0 1962 133 29 80 chr3 21210300 21210482 -196826676 - THE1B LTR MaLR -199 165 7 2563 81 0 0 chr3 21210532 21210839 -196826319 - AluSc SINE Alu -2 307 1 543 229 93 0 chr3 21210889 21211029 -196826129 - L1MC5 LINE L1 -67 7894 7742 2638 71 0 0 chr3 21211168 21211479 -196825679 - AluSx SINE Alu 0 312 2 854 173 0 0 chr3 21211636 21211769 -196825389 - AluJb SINE Alu -179 133 1 28 48 0 0 chr3 21212117 21212159 -196824999 + GC_rich Low_complexity Low_complexity 1 42 0 2197 73 16 35 chr3 21213614 21213930 -196823228 - AluSq SINE Alu -3 310 1 1543 152 0 31 chr3 21215020 21215310 -196821848 - AluJo SINE Alu -3 309 29 1850 157 0 0 chr3 21215364 21215663 -196821495 + AluJo SINE Alu 9 307 -5 1653 64 0 0 chr3 21215668 21215870 -196821288 + AluY SINE Alu 1 202 -109 304 159 0 0 chr3 21215875 21215929 -196821229 + AluY SINE Alu 253 299 -9 252 0 0 0 chr3 21216466 21216494 -196820664 + (TA)n Simple_repeat Simple_repeat 2 29 0 2055 113 3 0 chr3 21216516 21216809 -196820349 - AluSq SINE Alu -5 308 15 1705 120 36 29 chr3 21217002 21217311 -196819847 - AluY SINE Alu 0 311 1 1802 128 7 10 chr3 21217315 21217605 -196819553 - AluJb SINE Alu -23 289 1 2007 173 86 18 chr3 21217791 21218173 -196818985 - MSTB LTR MaLR -18 408 1 924 125 0 22 chr3 21218385 21218521 -196818637 - FLAM_C SINE Alu 0 133 1 207 100 0 0 chr3 21218629 21218659 -196818499 + (T)n Simple_repeat Simple_repeat 1 30 0 831 128 8 15 chr3 21218787 21218920 -196818238 - FLAM_C SINE Alu -1 132 1 180 0 0 0 chr3 21219063 21219083 -196818075 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 513 188 119 0 chr3 21219083 21219184 -196817974 - FLAM_A SINE Alu -29 113 1 248 244 0 0 chr3 21219288 21219333 -196817825 + MER20 DNA MER1_type 1 45 -174 1798 173 0 10 chr3 21219335 21219647 -196817511 - AluJb SINE Alu 0 312 4 897 119 8 0 chr3 21219828 21219962 -196817196 - AluSq/x SINE Alu -176 136 2 2021 123 3 3 chr3 21220048 21220348 -196816810 - AluSg SINE Alu -10 300 1 234 0 0 0 chr3 21221471 21221497 -196815661 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1235 213 13 43 chr3 21221655 21221955 -196815203 + AluJo SINE Alu 1 291 -21 2146 93 17 10 chr3 21222220 21222522 -196814636 - AluSp SINE Alu -9 304 1 1773 250 60 19 chr3 21222656 21223176 -196813982 - MER74B LTR ERVL -27 595 55 2141 84 10 35 chr3 21223282 21223593 -196813565 - AluSg SINE Alu -7 303 1 1109 139 5 39 chr3 21224683 21224891 -196812267 - AluJo SINE Alu -3 309 109 1535 128 0 4 chr3 21224993 21225220 -196811938 - AluSx SINE Alu -85 227 2 2021 123 3 3 chr3 21225306 21225606 -196811552 - AluSg SINE Alu -10 300 1 234 0 0 0 chr3 21226729 21226755 -196810403 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1235 213 13 43 chr3 21226913 21227213 -196809945 + AluJo SINE Alu 1 291 -21 2146 93 17 10 chr3 21227478 21227780 -196809378 - AluSp SINE Alu -9 304 1 1773 250 60 19 chr3 21227914 21228434 -196808724 - MER74B LTR ERVL -27 595 55 698 50 0 59 chr3 21228527 21228628 -196808530 - AluSg/x SINE Alu 0 312 218 226 209 0 0 chr3 21228628 21228671 -196808487 + Alu SINE Alu 252 294 -7 3366 177 88 45 chr3 21228681 21228716 -196808442 + L1MB2 LINE L1 5281 5313 -858 2050 112 13 10 chr3 21228716 21229028 -196808130 + AluSq SINE Alu 1 313 0 3366 177 88 45 chr3 21229028 21229653 -196807505 + L1MB2 LINE L1 5313 5909 -262 1247 174 55 0 chr3 21229653 21229871 -196807287 - MER30 DNA MER1_type 0 230 1 3366 177 88 45 chr3 21229871 21229958 -196807200 + L1MB2 LINE L1 5909 5991 -180 1308 169 115 32 chr3 21229958 21230237 -196806921 + AluJb SINE Alu 1 302 0 3366 177 88 45 chr3 21230237 21230339 -196806819 + L1MB2 LINE L1 5991 6169 -2 698 252 87 14 chr3 21230334 21230552 -196806606 + L1MB7 LINE L1 5814 6047 -137 * 12398 150 52 18 chr3 21230696 21230807 -196806351 - Tigger1 DNA MER2_type 0 2418 2312 1913 126 44 0 chr3 21230807 21231100 -196806058 + AluSx SINE Alu 1 306 -6 1444 186 31 21 chr3 21231110 21231401 -196805757 + AluJo SINE Alu 1 294 -18 12398 150 52 18 chr3 21231401 21231488 -196805670 - Tigger1 DNA MER2_type -114 2304 2221 2055 114 3 3 chr3 21231488 21231787 -196805371 + AluSq SINE Alu 1 299 -14 12398 150 52 18 chr3 21231787 21233729 -196803429 - Tigger1 DNA MER2_type -197 2221 182 2146 98 7 0 chr3 21233729 21234035 -196803123 + AluSg SINE Alu 1 308 -2 12398 150 52 18 chr3 21234035 21234167 -196802991 - Tigger1 DNA MER2_type -2236 182 56 674 177 57 38 chr3 21234200 21234358 -196802800 + AluJo SINE Alu 4 164 -148 776 98 115 8 chr3 21234376 21234498 -196802660 + AluSg SINE Alu 2 136 -174 2016 69 83 4 chr3 21234506 21234783 -196802375 + AluY SINE Alu 1 299 -12 248 244 44 44 chr3 21234802 21234892 -196802266 - L1MC4 LINE L1 -1339 6703 6614 189 195 0 0 chr3 21234892 21234933 -196802225 + (TA)n Simple_repeat Simple_repeat 2 42 0 2071 89 18 0 chr3 21235676 21235957 -196801201 - AluSc SINE Alu -23 286 1 599 165 9 37 chr3 21236272 21236381 -196800777 + FLAM_C SINE Alu 2 107 -36 1510 159 64 0 chr3 21236390 21236673 -196800485 + AluSx SINE Alu 1 301 -11 609 157 0 82 chr3 21236675 21236809 -196800349 + FRAM SINE Alu 1 40 0 2257 57 0 7 chr3 21237307 21237589 -196799569 + AluY SINE Alu 12 291 -20 193 29 59 0 chr3 21237592 21237626 -196799532 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 1695 175 3 22 chr3 21238013 21238328 -196798830 + AluJo SINE Alu 1 309 -3 2160 113 0 0 chr3 21238555 21238857 -196798301 - AluY SINE Alu -9 302 1 1064 117 0 0 chr3 21238857 21239002 -196798156 - AluSq/x SINE Alu -167 145 1 2038 84 0 30 chr3 21239548 21239891 -196797267 - AluY SINE Alu 0 334 1 2232 89 3 0 chr3 21240332 21240625 -196796533 + AluSg SINE Alu 1 294 -16 238 235 82 24 chr3 21241162 21241247 -196795911 + MIR SINE MIR 169 258 -4 1332 192 0 42 chr3 21241255 21241562 -196795596 - AluJo SINE Alu -18 294 1 232 224 20 20 chr3 21241605 21241654 -196795504 - MIR SINE MIR -213 49 1 1687 133 34 31 chr3 21241811 21242104 -196795054 - AluSx SINE Alu -18 294 1 2162 112 0 10 chr3 21242110 21242423 -196794735 - AluSg SINE Alu 0 310 1 1051 98 7 0 chr3 21242423 21242566 -196794592 - AluSg SINE Alu -166 144 1 434 62 0 0 chr3 21242739 21242804 -196794354 + Alu SINE Alu 241 305 -5 880 200 101 82 chr3 21242819 21243393 -196793765 + L1MC5 LINE L1 7153 7737 -224 847 189 51 46 chr3 21243396 21243592 -196793566 + Tigger2a DNA MER2_type 4 200 -234 792 179 0 0 chr3 21243692 21243809 -196793349 - FLAM_C SINE Alu -15 118 2 355 54 0 54 chr3 21244159 21244215 -196792943 + Alu SINE Alu 248 300 0 1654 176 14 0 chr3 21244522 21244811 -196792347 - AluJb SINE Alu -19 293 1 2137 107 3 0 chr3 21245460 21245759 -196791399 + AluSx SINE Alu 1 300 -12 1484 92 0 14 chr3 21246108 21246315 -196790843 - AluSq SINE Alu -52 261 58 23 0 0 0 chr3 21246396 21246419 -196790739 + AT_rich Low_complexity Low_complexity 1 23 0 1898 114 47 7 chr3 21246913 21247210 -196789948 + AluSq SINE Alu 1 309 -4 1509 174 8 4 chr3 21247358 21247623 -196789535 + AluSx SINE Alu 1 266 -46 1496 191 14 7 chr3 21248094 21248382 -196788776 + AluJb SINE Alu 1 290 -22 621 211 0 0 chr3 21248427 21248531 -196788627 + FLAM_A SINE Alu 9 112 -30 1361 114 5 5 chr3 21248654 21248856 -196788302 - AluSp SINE Alu -9 304 103 2135 93 6 13 chr3 21248966 21249279 -196787879 - AluY SINE Alu 0 311 1 1757 141 28 14 chr3 21249536 21249819 -196787339 + AluSx SINE Alu 1 290 -22 300 91 0 0 chr3 21249819 21249863 -196787295 + (CATAA)n Simple_repeat Simple_repeat 2 45 0 1805 122 50 4 chr3 21249870 21250148 -196787010 + AluSx SINE Alu 1 291 -21 1146 226 7 17 chr3 21250183 21250480 -196786678 + AluJo SINE Alu 6 299 -13 1682 135 4 8 chr3 21251196 21251463 -196785695 - AluSq SINE Alu -11 302 37 2021 113 3 13 chr3 21251701 21252002 -196785156 - AluSg SINE Alu -12 298 1 25 0 0 0 chr3 21252074 21252099 -196785059 + AT_rich Low_complexity Low_complexity 1 25 0 344 119 0 49 chr3 21252353 21252476 -196784682 + AluYa5 SINE Alu 92 287 -14 1925 111 45 0 chr3 21252490 21252779 -196784379 - AluY SINE Alu -9 302 1 1223 225 10 10 chr3 21252883 21253176 -196783982 - AluJb SINE Alu -19 293 1 1821 94 16 0 chr3 21253236 21253492 -196783666 - AluY SINE Alu -15 296 37 2419 182 65 17 chr3 21253604 21253825 -196783333 - L1MA9 LINE L1 -182 6130 5921 1982 139 0 0 chr3 21253825 21254128 -196783030 - AluSx SINE Alu -9 303 1 2419 182 65 17 chr3 21254128 21254195 -196782963 - L1MA9 LINE L1 -391 5921 5859 1735 155 35 0 chr3 21254195 21254485 -196782673 - AluJo SINE Alu -12 300 1 2419 182 65 17 chr3 21254485 21254718 -196782440 - L1MA9 LINE L1 -453 5859 5583 2171 108 0 16 chr3 21254718 21254896 -196782262 - AluSx SINE Alu -1 311 139 2118 98 20 0 chr3 21254896 21255193 -196781965 - AluSp SINE Alu -10 303 1 2171 108 0 16 chr3 21255193 21255330 -196781828 - AluSx SINE Alu -173 139 1 1008 98 0 0 chr3 21255334 21255467 -196781691 - AluSq/x SINE Alu -179 133 1 755 163 54 0 chr3 21255468 21255615 -196781543 - L1MA9 LINE L1 -1899 4247 4093 842 238 28 0 chr3 21255615 21255796 -196781362 + MER20 DNA MER1_type 33 218 -1 1804 118 0 64 chr3 21255850 21256163 -196780995 - AluSx SINE Alu -19 293 1 1999 99 22 0 chr3 21256237 21256536 -196780622 - AluSg SINE Alu 0 305 1 323 143 16 0 chr3 21256538 21256601 -196780557 - L1M3 LINE L1 -687 5493 5430 2022 106 0 0 chr3 21257226 21257508 -196779650 + AluSg SINE Alu 21 302 -8 366 296 37 12 chr3 21257990 21258152 -196779006 - L1M4 LINE L1 -1494 4652 4487 25 0 0 0 chr3 21258238 21258263 -196778895 + AT_rich Low_complexity Low_complexity 1 25 0 943 158 0 0 chr3 21258592 21258766 -196778392 - AluJb SINE Alu 0 307 134 2310 75 3 35 chr3 21259001 21259319 -196777839 - AluSp SINE Alu -5 308 1 240 59 0 0 chr3 21259394 21259428 -196777730 + (TTTG)n Simple_repeat Simple_repeat 4 37 0 1777 119 22 0 chr3 21259428 21259697 -196777461 - AluSq SINE Alu -35 278 4 2335 83 0 3 chr3 21259710 21260022 -196777136 - AluY SINE Alu 0 311 1 1709 161 31 0 chr3 21260088 21260379 -196776779 + AluJb SINE Alu 1 300 -12 2069 193 35 88 chr3 21261794 21262444 -196774714 + LTR6A LTR ERV1 1 564 0 282 379 71 32 chr3 21263181 21263433 -196773725 + L3 LINE CR1 617 858 -719 1717 184 14 10 chr3 21263433 21263727 -196773431 - AluJo SINE Alu -17 295 1 282 379 71 32 chr3 21263727 21263941 -196773217 + L3 LINE CR1 858 1101 -476 199 375 25 0 chr3 21264360 21264440 -196772718 - L2 LINE L2 -222 3050 2969 2234 104 3 0 chr3 21264913 21265212 -196771946 - AluSx SINE Alu -12 300 1 22 0 0 0 chr3 21267952 21267974 -196769184 + GC_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr3 21268284 21268307 -196768851 + (GGCTG)n Simple_repeat Simple_repeat 4 26 0 1840 132 103 0 chr3 21276152 21276425 -196760733 - AluSx SINE Alu -11 301 1 191 206 59 59 chr3 21276844 21276912 -196760246 + L2 LINE L2 3192 3259 -13 2182 108 0 36 chr3 21277412 21277718 -196759440 - AluSx SINE Alu -17 295 1 2286 93 38 0 chr3 21277722 21278013 -196759145 - AluSp SINE Alu -11 302 1 449 34 17 0 chr3 21278287 21278346 -196758812 + (TG)n Simple_repeat Simple_repeat 2 61 0 579 144 14 149 chr3 21278479 21278526 -196758632 + L1MA9 LINE L1 6089 6141 -171 2253 96 14 0 chr3 21278526 21278817 -196758341 - AluSq SINE Alu -14 299 5 579 144 14 149 chr3 21278817 21278838 -196758320 + L1MA9 LINE L1 6141 6163 -149 1821 169 0 41 chr3 21278838 21279158 -196758000 - AluJb SINE Alu -5 307 1 579 144 14 149 chr3 21279158 21279303 -196757855 + L1MA9 LINE L1 6163 6274 -38 779 140 0 29 chr3 21279317 21279453 -196757705 + FLAM_C SINE Alu 2 133 0 2112 151 0 10 chr3 21279463 21279774 -196757384 + AluSx SINE Alu 1 308 -4 439 198 119 10 chr3 21279929 21280030 -196757128 + FLAM_A SINE Alu 1 112 -30 180 0 0 0 chr3 21280031 21280051 -196757107 + (CAAT)n Simple_repeat Simple_repeat 4 23 0 1335 157 17 34 chr3 21280527 21280762 -196756396 - AluJb SINE Alu -77 235 5 255 343 34 14 chr3 21280776 21280922 -196756236 + L2 LINE L2 2934 3082 -190 2354 83 10 13 chr3 21281183 21281485 -196755673 + AluY SINE Alu 1 301 -10 550 185 0 0 chr3 21281486 21281578 -196755580 + AluJ/FLAM SINE Alu 2 93 -219 2275 108 3 0 chr3 21281578 21281875 -196755283 + AluSp SINE Alu 1 298 -15 210 91 0 0 chr3 21282368 21282401 -196754757 + (C)n Simple_repeat Simple_repeat 1 33 0 232 94 38 19 chr3 21282582 21282635 -196754523 + (CACCC)n Simple_repeat Simple_repeat 3 56 0 2120 89 43 0 chr3 21282821 21283102 -196754056 + AluSq SINE Alu 1 293 -20 1307 157 30 34 chr3 21283134 21283369 -196753789 - AluJb SINE Alu -77 235 2 260 207 147 96 chr3 21283897 21284148 -196753010 + L1MC4 LINE L1 7779 8042 0 2241 108 0 3 chr3 21284161 21284466 -196752692 + AluSx SINE Alu 1 304 -8 2074 133 0 7 chr3 21284467 21284760 -196752398 + AluSx SINE Alu 1 291 -21 23 0 0 0 chr3 21284798 21284821 -196752337 + AT_rich Low_complexity Low_complexity 1 23 0 2364 106 0 10 chr3 21285240 21285552 -196751606 + AluSc SINE Alu 1 309 0 803 135 8 0 chr3 21285587 21285713 -196751445 - FLAM_C SINE Alu -6 127 1 2296 101 3 10 chr3 21285719 21286025 -196751133 - AluSp SINE Alu -6 307 4 1935 154 3 20 chr3 21286031 21286336 -196750822 - AluJo SINE Alu -12 300 1 2316 111 0 3 chr3 21286388 21286695 -196750463 - AluSx SINE Alu -6 306 1 1637 82 23 14 chr3 21286698 21286917 -196750241 - AluSq SINE Alu -4 309 89 2534 64 0 10 chr3 21287050 21287362 -196749796 - AluY SINE Alu -2 309 1 655 152 0 0 chr3 21287976 21288081 -196749077 + AluSg/x SINE Alu 194 298 -14 852 170 0 0 chr3 21288083 21288218 -196748940 - AluJo SINE Alu -177 135 1 2124 114 3 7 chr3 21288222 21288512 -196748646 - AluJb SINE Alu -23 289 1 1929 173 86 18 chr3 21288698 21289080 -196748078 - MSTB LTR MaLR -18 408 1 881 125 0 22 chr3 21289292 21289428 -196747730 - FLAM_C SINE Alu 0 133 1 207 100 0 0 chr3 21289537 21289567 -196747591 + (T)n Simple_repeat Simple_repeat 1 30 0 792 128 8 15 chr3 21289695 21289828 -196747330 - FLAM_C SINE Alu -1 132 1 180 0 0 0 chr3 21289971 21289991 -196747167 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 489 188 119 0 chr3 21289991 21290092 -196747066 - FLAM_A SINE Alu -29 113 1 247 231 0 103 chr3 21290196 21290243 -196746915 + MER20 DNA MER1_type 1 39 -180 2370 125 0 0 chr3 21290243 21290555 -196746603 - AluSx SINE Alu 0 312 1 247 231 0 103 chr3 21290555 21290585 -196746573 + MER20 DNA MER1_type 39 70 -149 * 282 221 0 0 chr3 21290560 21290628 -196746530 + Charlie2 DNA MER1_type 1817 1884 -978 1897 156 24 0 chr3 21290650 21290945 -196746213 - AluSx SINE Alu -4 308 7 412 190 13 0 chr3 21290961 21291040 -196746118 - FLAM_A SINE Alu -13 120 41 613 261 166 13 chr3 21291067 21291374 -196745784 - L1ME2 LINE L1 -10 6154 5801 344 167 0 0 chr3 21291382 21291442 -196745716 - L1ME2 LINE L1 -833 5313 5254 731 170 0 21 chr3 21291442 21291583 -196745575 - AluSg/x SINE Alu -16 294 157 398 98 0 0 chr3 21291583 21291644 -196745514 + Alu SINE Alu 240 300 -1 1502 195 10 13 chr3 21291649 21291952 -196745206 + AluSq SINE Alu 1 302 -11 2292 101 3 7 chr3 21292143 21292450 -196744708 + AluSg SINE Alu 1 306 -4 207 189 0 0 chr3 21292597 21292650 -196744508 + T-rich Low_complexity Low_complexity 1 53 0 727 113 0 0 chr3 21292650 21292756 -196744402 - AluSq/x SINE Alu -206 107 2 2313 78 24 0 chr3 21292764 21293057 -196744101 - AluSg SINE Alu -8 302 3 951 84 0 0 chr3 21293066 21293185 -196743973 - AluY SINE Alu -7 304 186 1759 75 121 0 chr3 21293185 21293424 -196743734 - AluSx SINE Alu -44 268 1 298 180 0 16 chr3 21293426 21293487 -196743671 + MLT1L LTR MaLR 556 615 0 461 313 65 6 chr3 21293645 21293676 -196743482 - L1M4c LINE L1 -856 1887 1859 2182 111 9 19 chr3 21293676 21293991 -196743167 - AluSx SINE Alu 0 312 1 461 313 65 6 chr3 21293991 21294231 -196742927 - L1M4c LINE L1 -884 1859 1535 2130 110 31 0 chr3 21294231 21294523 -196742635 - AluSc SINE Alu -8 301 1 1507 153 4 4 chr3 21294528 21294757 -196742401 - AluJb SINE Alu -13 299 71 444 37 0 0 chr3 21294760 21294814 -196742344 + (TG)n Simple_repeat Simple_repeat 1 54 0 481 238 0 0 chr3 21294814 21294915 -196742243 - AluJb SINE Alu -33 279 179 1480 117 0 0 chr3 21295172 21295368 -196741790 + AluSg/x SINE Alu 109 304 -8 1959 99 3 48 chr3 21295377 21295692 -196741466 + AluSg SINE Alu 1 302 0 2121 115 37 0 chr3 21295716 21296011 -196741147 + AluSx SINE Alu 1 306 -6 620 200 0 0 chr3 21296060 21296175 -196740983 - MER58A DNA MER1_type 0 156 42 862 152 0 22 chr3 21296180 21296318 -196740840 + AluJb SINE Alu 5 139 -173 2497 90 0 0 chr3 21296318 21296630 -196740528 + AluSx SINE Alu 1 312 0 2560 55 0 0 chr3 21296651 21296943 -196740215 + AluY SINE Alu 1 292 -19 1767 114 0 74 chr3 21297043 21297341 -196739817 + AluSg SINE Alu 27 302 -8 2321 113 0 0 chr3 21297391 21297691 -196739467 + AluSx SINE Alu 1 300 -12 1797 161 10 7 chr3 21297845 21298137 -196739021 + AluSx SINE Alu 1 293 -19 258 164 0 0 chr3 21298248 21298303 -196738855 + (TA)n Simple_repeat Simple_repeat 1 55 0 2245 115 3 0 chr3 21298303 21298599 -196738559 - AluSp SINE Alu -16 297 1 2307 91 7 0 chr3 21298610 21298906 -196738252 - AluY SINE Alu -13 298 1 257 273 128 23 chr3 21298906 21299078 -196738080 + L1MC5 LINE L1 7721 7910 -51 2408 103 3 0 chr3 21299095 21299405 -196737753 - AluSp SINE Alu -2 311 1 294 50 0 0 chr3 21300028 21300068 -196737090 + (TG)n Simple_repeat Simple_repeat 1 40 0 819 213 138 22 chr3 21300121 21300346 -196736812 - AluJb SINE Alu -22 290 40 1523 134 26 105 chr3 21300389 21300526 -196736632 + AluYb8 SINE Alu 1 102 -216 2416 78 0 3 chr3 21300526 21300822 -196736336 + AluY SINE Alu 3 297 -14 1523 134 26 105 chr3 21300822 21300989 -196736169 + AluYb8 SINE Alu 102 281 -37 234 73 24 24 chr3 21300990 21301031 -196736127 - Alu SINE Alu -177 125 85 220 288 18 54 chr3 21302153 21302190 -196734968 + GA-rich Low_complexity Low_complexity 1 38 -697 2207 108 3 0 chr3 21302190 21302516 -196734642 + AluSg SINE Alu 3 329 0 220 288 18 54 chr3 21302516 21302605 -196734553 + GA-rich Low_complexity Low_complexity 38 129 -606 2227 118 0 0 chr3 21302605 21302892 -196734266 + AluSg SINE Alu 1 287 -23 220 288 18 54 chr3 21302892 21302916 -196734242 + GA-rich Low_complexity Low_complexity 129 735 0 311 250 60 0 chr3 21307493 21307577 -196729581 - L2 LINE L2 -2 3270 3182 2425 98 0 0 chr3 21308305 21308612 -196728546 - AluY SINE Alu -2 309 3 201 304 120 0 chr3 21309138 21309230 -196727928 + MIR3 SINE MIR 96 198 -10 201 322 145 7 chr3 21309749 21309901 -196727257 + MIR3 SINE MIR 36 208 0 329 304 35 9 chr3 21310199 21310314 -196726844 + MIR3 SINE MIR 37 154 -54 2366 90 0 3 chr3 21310322 21310623 -196726535 + AluSx SINE Alu 6 305 -7 325 140 0 0 chr3 21311612 21311662 -196725496 - MER66A LTR ERV1 -142 336 287 26 0 0 0 chr3 21312049 21312075 -196725083 + AT_rich Low_complexity Low_complexity 1 26 0 2474 81 7 0 chr3 21312248 21312556 -196724602 - AluYa5 SINE Alu -1 310 1 22 35 0 0 chr3 21312710 21312739 -196724419 + AT_rich Low_complexity Low_complexity 1 29 0 1950 117 81 0 chr3 21313029 21313302 -196723856 - AluSc SINE Alu -14 295 1 852 264 101 47 chr3 21314419 21314672 -196722486 + L1MC4a LINE L1 5177 4912 -1234 2134 127 7 0 chr3 21314672 21314963 -196722195 - AluSx SINE Alu -19 293 1 852 264 101 47 chr3 21314963 21315485 -196721673 + L1MC4a LINE L1 4911 5403 -743 679 213 131 123 chr3 21315556 21315742 -196721416 - L1MD2 LINE L1 -21 6338 6155 192 40 0 0 chr3 21315742 21315767 -196721391 + (TG)n Simple_repeat Simple_repeat 2 26 0 679 213 131 123 chr3 21315767 21315804 -196721354 - L1MD2 LINE L1 -204 6155 6120 257 77 0 51 chr3 21315804 21315843 -196721315 - Alu SINE Alu -244 59 23 679 213 131 123 chr3 21315843 21315993 -196721165 - L1MD2 LINE L1 -239 6120 5923 * 1073 222 89 25 chr3 21315974 21316233 -196720925 - L1MDb LINE L1 -2015 4525 4241 2129 81 30 50 chr3 21316233 21316531 -196720627 - AluY SINE Alu -19 292 1 1073 222 89 25 chr3 21316531 21316586 -196720572 - L1MDb LINE L1 -2299 4241 4191 1433 197 48 24 chr3 21316589 21316884 -196720274 - AluJo SINE Alu -6 306 5 1374 221 106 17 chr3 21316888 21317305 -196719853 - L1MDb LINE L1 -3369 3171 2718 1386 159 8 16 chr3 21317315 21317560 -196719598 + AluJo SINE Alu 23 265 -47 318 50 0 0 chr3 21317572 21317612 -196719546 + (TA)n Simple_repeat Simple_repeat 1 40 0 407 253 48 7 chr3 21317615 21317761 -196719397 - L1MDb LINE L1 -3945 2776 2625 1386 170 27 0 chr3 21317787 21318010 -196719148 - AluJo SINE Alu -83 229 1 3981 193 45 94 chr3 21318010 21318103 -196719055 - L1MDb LINE L1 -3923 2617 2521 2256 115 0 10 chr3 21318103 21318416 -196718742 + AluSq SINE Alu 1 310 -3 3981 193 45 94 chr3 21318416 21318721 -196718437 - L1MDb LINE L1 -4019 2521 2203 790 158 8 8 chr3 21318721 21318848 -196718310 - FLAM_A SINE Alu -6 127 1 3981 193 45 94 chr3 21318848 21318922 -196718236 - L1MDb LINE L1 -4337 2203 2127 2035 138 0 13 chr3 21318922 21319220 -196717938 - AluSx SINE Alu -18 294 1 3981 193 45 94 chr3 21319220 21319346 -196717812 - L1MDb LINE L1 -4413 2127 1996 2196 80 24 7 chr3 21319346 21319634 -196717524 - AluSp SINE Alu -20 293 1 3981 193 45 94 chr3 21319634 21320549 -196716609 - L1MDb LINE L1 -4544 1996 1175 619 288 116 5 chr3 21320553 21320751 -196716407 - L1MDb LINE L1 -5511 1032 813 765 236 36 68 chr3 21321266 21321359 -196715799 - L1MDb LINE L1 -6236 307 213 719 175 0 0 chr3 21321359 21321473 -196715685 + FLAM_C SINE Alu 5 118 -15 312 70 0 0 chr3 21321475 21321518 -196715640 + (CAAT)n Simple_repeat Simple_repeat 3 45 0 765 236 36 68 chr3 21321518 21321703 -196715455 - L1MDb LINE L1 -6331 212 34 2540 62 0 0 chr3 21321831 21322135 -196715023 - AluY SINE Alu -7 304 1 1711 193 0 7 chr3 21322405 21322710 -196714448 - AluJb SINE Alu -9 303 1 7206 138 111 94 chr3 21323131 21324798 -196712360 + pTR5 LTR ERV1 743 2438 0 248 100 0 40 chr3 21328774 21328824 -196708334 + (GAAA)n Simple_repeat Simple_repeat 1 48 0 22 0 0 0 chr3 21329868 21329890 -196707268 + AT_rich Low_complexity Low_complexity 1 22 0 2531 72 0 3 chr3 21330409 21330715 -196706443 + AluY SINE Alu 1 305 -6 1865 154 17 3 chr3 21330852 21331144 -196706014 + AluJb SINE Alu 1 296 -16 279 293 120 33 chr3 21331323 21331473 -196705685 + MIR3 SINE MIR 31 193 -15 2480 63 3 0 chr3 21332356 21332658 -196704500 + AluSp SINE Alu 1 303 -10 365 298 8 33 chr3 21333059 21333180 -196703978 - MIR SINE MIR -60 148 31 2153 116 3 0 chr3 21333242 21333534 -196703624 - AluSx SINE Alu -19 293 1 2149 99 0 45 chr3 21333765 21334078 -196703080 + AluSg SINE Alu 1 299 -11 2396 85 0 0 chr3 21334330 21334625 -196702533 + AluSc SINE Alu 1 295 -14 1526 174 23 52 chr3 21334773 21335078 -196702080 + AluJo SINE Alu 1 296 -16 1273 112 0 32 chr3 21335361 21335548 -196701610 - AluSq SINE Alu -132 181 1 2077 101 22 0 chr3 21336566 21336871 -196700287 + AluSx SINE Alu 1 311 0 1525 183 8 0 chr3 21337536 21337798 -196699360 + AluJb SINE Alu 35 298 -14 1913 160 21 0 chr3 21337986 21338273 -196698885 + AluJb SINE Alu 1 293 -19 2482 93 0 0 chr3 21338502 21338812 -196698346 + AluSg SINE Alu 1 310 0 2563 57 0 0 chr3 21339362 21339662 -196697496 + AluY SINE Alu 1 300 -11 332 244 163 49 chr3 21340214 21340337 -196696821 + MIR SINE MIR 20 156 -106 1874 86 21 4 chr3 21340435 21340678 -196696480 - AluSx SINE Alu -21 291 45 1898 141 0 28 chr3 21340790 21341080 -196696078 - AluSx SINE Alu -30 282 1 22 35 0 0 chr3 21341860 21341889 -196695269 + AT_rich Low_complexity Low_complexity 1 29 0 197 33 33 0 chr3 21346917 21346947 -196690211 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 415 287 160 7 chr3 21348402 21348552 -196688606 - MER5A DNA MER1_type 0 189 17 282 361 19 38 chr3 21348542 21348700 -196688458 - MIR3 SINE MIR -12 196 42 * 2324 93 0 13 chr3 21348726 21349039 -196688119 + AluSx SINE Alu 1 309 -3 2744 16 0 7 chr3 21349043 21349380 -196687778 + AluYb8 SINE Alu 1 318 0 692 209 30 32 chr3 21349383 21349526 -196687632 + L1ME LINE L1 5182 5328 -838 2255 93 7 10 chr3 21349526 21349826 -196687332 + AluY SINE Alu 1 299 -12 692 209 30 32 chr3 21349826 21349948 -196687210 + L1ME LINE L1 5328 5449 -717 573 171 195 30 chr3 21350155 21350319 -196686839 - LTR41 LTR ERVL -582 191 1 809 169 0 14 chr3 21350510 21350652 -196686506 - FLAM_C SINE Alu -3 140 1 2192 113 3 3 chr3 21351711 21352004 -196685154 + AluSx SINE Alu 3 295 -17 238 261 29 0 chr3 21352469 21352538 -196684620 - L2 LINE L2 -1529 1785 1715 2439 70 3 10 chr3 21352556 21352857 -196684301 - AluSp SINE Alu -14 299 1 309 279 96 0 chr3 21353595 21353699 -196683459 + L2 LINE L2 3196 3309 -4 182 241 37 19 chr3 21353732 21353786 -196683372 + L3 LINE CR1 1518 1572 -5 1612 186 25 0 chr3 21353916 21354195 -196682963 + AluJb SINE Alu 1 286 -26 24 0 0 0 chr3 21354283 21354307 -196682851 + AT_rich Low_complexity Low_complexity 1 24 0 2283 97 0 7 chr3 21354610 21354910 -196682248 + AluY SINE Alu 1 298 -13 1092 169 0 0 chr3 21354910 21355076 -196682082 + AluJb SINE Alu 137 302 -10 983 220 15 100 chr3 21355077 21355418 -196681740 - L1ME1 LINE L1 -5 6161 5850 1305 116 11 11 chr3 21355419 21355608 -196681550 + AluJo SINE Alu 113 301 -11 674 213 12 62 chr3 21355612 21355772 -196681386 + FAM SINE Alu 1 152 -33 4307 165 46 7 chr3 21355784 21356590 -196680568 + L1MB7 LINE L1 5348 6184 0 718 94 57 0 chr3 21356598 21356704 -196680454 + HY1 scRNA scRNA 1 112 0 1556 192 0 55 chr3 21356718 21357030 -196680128 + AluJb SINE Alu 1 295 -17 1521 177 31 31 chr3 21357132 21357420 -196679738 - AluJb SINE Alu -24 288 1 371 102 0 0 chr3 21357522 21357571 -196679587 - Alu SINE Alu -7 293 245 206 219 0 0 chr3 21357729 21357770 -196679388 + G-rich Low_complexity Low_complexity 5 45 0 345 273 111 6 chr3 21357943 21358115 -196679043 - L1MC5 LINE L1 -51 7910 7721 2206 117 3 0 chr3 21358115 21358413 -196678745 + AluSg SINE Alu 1 299 -11 2054 112 18 0 chr3 21358413 21358688 -196678470 - AluSx SINE Alu -31 281 1 983 109 0 14 chr3 21358688 21358826 -196678332 - AluSq/x SINE Alu -177 136 1 293 254 156 95 chr3 21358829 21359207 -196677951 - L1MC5 LINE L1 -476 7485 7085 1649 165 63 3 chr3 21359274 21359559 -196677599 + AluJb SINE Alu 1 302 -10 2484 48 3 7 chr3 21360628 21360919 -196676239 - AluY SINE Alu -20 291 2 2188 117 0 7 chr3 21361000 21361298 -196675860 - AluSg SINE Alu -14 296 1 180 200 0 0 chr3 21361518 21361548 -196675610 + MIR SINE MIR 116 145 -63 234 0 0 0 chr3 21361607 21361633 -196675525 + (TTG)n Simple_repeat Simple_repeat 2 27 0 27 29 0 0 chr3 21361641 21361675 -196675483 + AT_rich Low_complexity Low_complexity 1 34 0 2186 112 7 0 chr3 21361675 21361961 -196675197 - AluSq SINE Alu -25 288 1 483 51 0 0 chr3 21361961 21362020 -196675138 - AluSq/x SINE Alu -177 136 78 1268 175 0 5 chr3 21362020 21362231 -196674927 - AluSx SINE Alu -100 212 3 1858 175 3 7 chr3 21362236 21362539 -196674619 - AluJo SINE Alu -7 305 4 1924 143 36 0 chr3 21362566 21362846 -196674312 + AluJb SINE Alu 1 290 -22 1625 165 47 26 chr3 21363003 21363428 -196673730 + MER34B LTR ERV1 35 565 0 2234 113 0 7 chr3 21363628 21363937 -196673221 - AluSc SINE Alu -2 307 1 2127 99 0 45 chr3 21364189 21364502 -196672656 - AluSg SINE Alu -11 299 1 259 367 48 14 chr3 21365057 21365204 -196671954 - MIR3 SINE MIR -23 185 34 414 267 105 35 chr3 21365305 21365397 -196671761 + Charlie8 DNA MER1_type 47 131 -2286 1743 162 28 7 chr3 21365397 21365687 -196671471 + AluJb SINE Alu 1 296 -16 414 267 105 35 chr3 21365687 21365766 -196671392 + Charlie8 DNA MER1_type 131 230 -2187 2021 142 0 0 chr3 21365844 21366126 -196671032 + AluSx SINE Alu 1 282 -30 2252 89 3 3 chr3 21366327 21366618 -196670540 + AluSg1 SINE Alu 1 291 -18 1795 153 3 10 chr3 21366694 21366982 -196670176 + AluJb SINE Alu 1 286 -26 2090 106 10 3 chr3 21366989 21367281 -196669877 + AluSx SINE Alu 1 294 -18 1990 113 35 0 chr3 21367551 21367835 -196669323 + AluY SINE Alu 1 294 -17 237 115 94 0 chr3 21367835 21367931 -196669227 + (TA)n Simple_repeat Simple_repeat 2 106 0 782 206 0 22 chr3 21367940 21368076 -196669082 + FLAM_C SINE Alu 1 133 0 1304 161 10 87 chr3 21368137 21368348 -196668810 + L1MC3 LINE L1 6684 6867 -918 2182 127 0 0 chr3 21368348 21368655 -196668503 + AluSx SINE Alu 1 307 -5 1304 161 10 87 chr3 21368655 21368742 -196668416 + L1MC3 LINE L1 6867 6959 -826 5995 50 16 42 chr3 21369995 21371319 -196665839 + SVA Other Other 1 1123 -263 312 94 0 0 chr3 21371319 21371372 -196665786 + (TAAAAA)n Simple_repeat Simple_repeat 2 54 0 1778 137 0 4 chr3 21371375 21371631 -196665527 + AluSg SINE Alu 54 308 -2 390 188 232 29 chr3 21371746 21371884 -196665274 + L1ME1 LINE L1 5996 6161 -5 1602 178 42 0 chr3 21371931 21372218 -196664940 + AluJo SINE Alu 1 299 -13 534 259 30 148 chr3 21372224 21372415 -196664743 + ERVL LTR ERVL 1204 1355 -4409 2303 110 0 0 chr3 21372415 21372716 -196664442 + AluSx SINE Alu 5 305 -7 534 259 30 148 chr3 21372716 21372794 -196664364 + ERVL LTR ERVL 1355 1441 -4323 440 188 12 0 chr3 21372814 21372894 -196664264 - MER58B DNA MER1_type 0 341 261 381 377 14 0 chr3 21372947 21373093 -196664065 + ERVL LTR ERVL 1497 1644 -4120 4947 284 38 23 chr3 21373448 21374024 -196663134 + ERVL LTR ERVL 2172 2738 -3026 417 39 0 0 chr3 21374024 21374075 -196663083 + (CA)n Simple_repeat Simple_repeat 1 51 0 4947 284 38 23 chr3 21374075 21375762 -196661396 + ERVL LTR ERVL 2738 4516 -1248 1997 133 3 10 chr3 21375768 21376062 -196661096 - AluSx SINE Alu -20 292 1 849 153 0 15 chr3 21376073 21376204 -196660954 - FLAM_C SINE Alu -14 129 1 2724 266 103 9 chr3 21376204 21377054 -196660104 + ERVL LTR ERVL 4504 5433 -331 1166 118 0 0 chr3 21377114 21377275 -196659883 - AluSg/x SINE Alu -18 292 132 2379 91 0 0 chr3 21377275 21377571 -196659587 - AluSc SINE Alu -10 299 4 1791 128 56 14 chr3 21377776 21378064 -196659094 + AluSx SINE Alu 1 300 -12 1929 74 0 23 chr3 21378067 21378323 -196658835 + AluY SINE Alu 1 250 -61 1459 178 127 50 chr3 21378517 21378751 -196658407 + Charlie1 DNA MER1_type 2264 2479 -282 2185 101 0 36 chr3 21378751 21379059 -196658099 + AluSg SINE Alu 1 297 -13 1459 178 127 50 chr3 21379059 21379240 -196657918 + Charlie1 DNA MER1_type 2479 2711 -50 1018 167 0 44 chr3 21379633 21379813 -196657345 - FAM SINE Alu 0 175 4 305 238 131 25 chr3 21379961 21380083 -196657075 + L1MC4 LINE L1 7904 8038 -4 1641 178 16 13 chr3 21380083 21380386 -196656772 + AluJo SINE Alu 1 304 -8 1764 158 15 0 chr3 21380585 21380857 -196656301 + AluSx SINE Alu 1 276 -36 2283 109 0 0 chr3 21381285 21381587 -196655571 + AluSg SINE Alu 1 302 -8 345 235 113 75 chr3 21382115 21382328 -196654830 + L1MC5 LINE L1 7603 7823 -138 1834 98 4 0 chr3 21382330 21382566 -196654592 + AluSx SINE Alu 1 237 -75 322 293 81 24 chr3 21382683 21382806 -196654352 + L2 LINE L2 3143 3272 0 25 0 0 0 chr3 21382957 21382982 -196654176 + AT_rich Low_complexity Low_complexity 1 25 0 1329 130 39 10 chr3 21382982 21383189 -196653969 - AluJb SINE Alu -15 297 85 2332 87 0 29 chr3 21383189 21383501 -196653657 - AluY SINE Alu -8 303 1 330 253 67 86 chr3 21383753 21383901 -196653257 - MIR3 SINE MIR -17 191 39 2348 100 3 0 chr3 21383901 21384211 -196652947 - AluSq SINE Alu 0 313 3 330 253 67 86 chr3 21384211 21384230 -196652928 - MIR3 SINE MIR -169 39 21 2047 130 17 3 chr3 21384459 21384759 -196652399 - AluSq SINE Alu -9 304 1 228 207 9 135 chr3 21384782 21384893 -196652265 - MLT1K LTR MaLR -158 430 334 24 53 0 0 chr3 21384899 21384937 -196652221 + AT_rich Low_complexity Low_complexity 1 38 0 951 227 37 29 chr3 21384954 21385227 -196651931 - AluSq SINE Alu -13 300 26 1883 139 0 28 chr3 21385328 21385616 -196651542 - AluSx SINE Alu -32 280 1 1402 205 95 5 chr3 21386433 21386877 -196650281 + Charlie2 DNA MER1_type 2378 2861 -1 1965 147 0 23 chr3 21387112 21387419 -196649739 - AluSx SINE Alu -11 301 2 1446 176 28 38 chr3 21387435 21387589 -196649569 - AluJo SINE Alu -25 287 133 243 0 0 0 chr3 21387589 21387616 -196649542 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 2225 92 0 3 chr3 21387617 21387901 -196649257 - AluSx SINE Alu -27 285 3 1446 176 28 38 chr3 21387901 21388034 -196649124 - AluJo SINE Alu -178 134 1 735 144 0 24 chr3 21388042 21388167 -196648991 - L1MC3 LINE L1 -805 6980 6859 1057 174 31 0 chr3 21389009 21389170 -196647988 + FAM SINE Alu 1 166 -9 917 215 155 76 chr3 21389323 21389568 -196647590 + L1M4 LINE L1 4475 4699 -1447 1917 126 0 11 chr3 21389568 21389846 -196647312 + AluSx SINE Alu 1 275 -37 917 215 155 76 chr3 21389846 21390098 -196647060 + L1M4 LINE L1 4699 5011 -1135 653 278 110 8 chr3 21390252 21390515 -196646643 + MER66A LTR ERV1 189 478 0 601 172 25 14 chr3 21390634 21390779 -196646379 + LTR41 LTR ERVL 590 766 -7 275 253 0 55 chr3 21391540 21391631 -196645527 - MIR SINE MIR -106 156 71 1764 267 106 46 chr3 21391793 21392745 -196644413 - L2 LINE L2 -2 3311 2298 3921 177 56 32 chr3 21393020 21394240 -196642918 - L1MB3 LINE L1 -163 6137 4931 1323 186 39 36 chr3 21394240 21394387 -196642771 - AluJo SINE Alu -30 282 132 2418 87 3 3 chr3 21394387 21394698 -196642460 - AluY SINE Alu 0 311 1 1323 186 39 36 chr3 21394698 21394830 -196642328 - AluJo SINE Alu -180 132 2 3921 177 56 32 chr3 21394830 21395173 -196641985 - L1MB3 LINE L1 -1369 4931 4598 2198 82 7 0 chr3 21395206 21395512 -196641646 + AluSx SINE Alu 1 308 0 2023 144 7 0 chr3 21395522 21395821 -196641337 + AluSq SINE Alu 1 301 -12 1783 157 28 3 chr3 21395832 21396119 -196641039 + AluJo SINE Alu 1 294 -18 3123 228 49 14 chr3 21396273 21397197 -196639961 + L1M4 LINE L1 2490 3445 -2701 2043 116 6 42 chr3 21397278 21397589 -196639569 + AluSq SINE Alu 1 300 -13 769 65 0 0 chr3 21397935 21398027 -196639131 + AluY SINE Alu 204 295 -16 484 321 26 41 chr3 21398031 21398299 -196638859 + LTR16C LTR ERVL 195 458 -33 2316 92 3 25 chr3 21398357 21398673 -196638485 + AluSp SINE Alu 1 309 -4 2300 95 0 22 chr3 21398681 21398996 -196638162 + AluSq SINE Alu 1 308 -5 2684 52 0 0 chr3 21400756 21401066 -196636092 + AluY SINE Alu 1 310 -1 208 250 0 0 chr3 21401412 21401452 -196635706 + polypurine Low_complexity Low_complexity 2 41 0 2130 113 10 0 chr3 21402300 21402591 -196634567 + AluSx SINE Alu 1 294 -18 2501 71 0 0 chr3 21403949 21404246 -196632912 - AluSx SINE Alu -15 297 1 2081 137 7 0 chr3 21406465 21406771 -196630387 - AluSq SINE Alu -4 309 2 186 133 0 0 chr3 21406889 21406919 -196630239 + (T)n Simple_repeat Simple_repeat 1 30 0 1573 223 57 60 chr3 21406939 21407625 -196629533 - L1M LINE L1 -744 5402 4716 2101 106 0 17 chr3 21407625 21407917 -196629241 - AluSx SINE Alu -25 287 1 1573 223 57 60 chr3 21407917 21407972 -196629186 - L1M LINE L1 -1430 4716 4662 1891 148 3 28 chr3 21407972 21408289 -196628869 - AluJo SINE Alu -3 309 1 1573 223 57 60 chr3 21408289 21408407 -196628751 - L1M LINE L1 -1484 4662 4562 276 256 199 39 chr3 21409066 21409325 -196627833 + L1ME LINE L1 5450 5758 -406 736 194 104 0 chr3 21409447 21409548 -196627610 + AluJo SINE Alu 19 139 -173 216 0 0 0 chr3 21409548 21409572 -196627586 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 736 194 104 0 chr3 21409572 21409604 -196627554 + AluJo SINE Alu 139 166 -146 26 0 0 0 chr3 21409612 21409638 -196627520 + AT_rich Low_complexity Low_complexity 1 26 0 2005 126 20 3 chr3 21409644 21409937 -196627221 + AluSx SINE Alu 1 298 -14 505 240 106 23 chr3 21409939 21410156 -196627002 + Charlie2 DNA MER1_type 2076 2310 -552 2198 101 17 3 chr3 21410159 21410456 -196626702 + AluSx SINE Alu 1 301 -11 1272 185 31 39 chr3 21410468 21410754 -196626404 - AluJo SINE Alu -28 284 1 261 350 0 12 chr3 21410757 21410837 -196626321 + MIR SINE MIR 47 125 -83 2142 118 20 16 chr3 21411907 21412211 -196624947 - AluSx SINE Alu -7 305 1 813 71 27 0 chr3 21412762 21412874 -196624284 + Charlie1 DNA MER1_type 2165 2279 -482 465 192 0 13 chr3 21412874 21412952 -196624206 + AluJ/FLAM SINE Alu 2 78 -234 2225 114 0 3 chr3 21412953 21413252 -196623906 - AluSq SINE Alu -15 298 1 2231 90 7 10 chr3 21413771 21414070 -196623088 + AluSc SINE Alu 1 298 -11 251 260 0 0 chr3 21414176 21414226 -196622932 - MER5A DNA MER1_type -105 84 35 846 133 51 32 chr3 21414450 21414608 -196622550 + FAM SINE Alu 11 171 -14 1054 182 5 3 chr3 21414642 21414847 -196622311 + AluJb SINE Alu 119 309 -3 565 202 334 25 chr3 21415288 21415605 -196621553 + L2 LINE L2 2154 2568 -746 1292 240 108 28 chr3 21415605 21415818 -196621340 - MLT1F LTR MaLR -124 418 223 2385 65 0 7 chr3 21415818 21416111 -196621047 - AluSc SINE Alu -18 291 1 1292 240 108 28 chr3 21416111 21416284 -196620874 - MLT1F LTR MaLR -319 223 1 181 264 81 58 chr3 21416299 21416386 -196620772 + L2 LINE L2 2023 2111 -1203 626 152 0 0 chr3 21416415 21416514 -196620644 + AluJb SINE Alu 208 306 -6 320 224 71 12 chr3 21416514 21416599 -196620559 + L1MB7 LINE L1 5777 5866 -318 466 273 87 6 chr3 21416736 21416908 -196620250 - L2 LINE L2 -1868 1446 1261 2256 107 7 0 chr3 21418354 21418662 -196618496 + AluSx SINE Alu 1 310 -2 1745 128 56 69 chr3 21418896 21419058 -196618100 - AluSx SINE Alu -12 300 142 2168 67 4 4 chr3 21419058 21419327 -196617831 - AluSq SINE Alu -39 274 6 1745 128 56 69 chr3 21419327 21419468 -196617690 - AluSx SINE Alu -170 142 1 29 47 0 0 chr3 21419528 21419571 -196617587 + AT_rich Low_complexity Low_complexity 1 43 0 2143 80 0 14 chr3 21419961 21420280 -196616878 - AluY SINE Alu 0 315 1 829 254 31 5 chr3 21421183 21421407 -196615751 + L2 LINE L2 2244 2473 -841 972 263 233 12 chr3 21421408 21421552 -196615606 - L2 LINE L2 -1396 1918 1807 2567 64 0 0 chr3 21421552 21421863 -196615295 + AluY SINE Alu 1 311 0 972 263 233 12 chr3 21421863 21422228 -196614930 - L2 LINE L2 -1507 1807 1296 2109 116 13 7 chr3 21422447 21422748 -196614410 - AluSg SINE Alu -7 303 1 839 142 0 17 chr3 21422775 21422895 -196614263 + FLAM_C SINE Alu 10 127 -16 245 231 31 15 chr3 21423889 21423954 -196613204 - MER5A DNA MER1_type -1 188 123 840 174 0 47 chr3 21423960 21424109 -196613049 + AluJo SINE Alu 2 143 -169 1052 202 46 85 chr3 21425025 21425303 -196611855 + AluJo SINE Alu 1 267 -35 2389 66 0 23 chr3 21425303 21425608 -196611550 - AluSq SINE Alu -13 300 3 1052 202 46 85 chr3 21425608 21425636 -196611522 + AluJo SINE Alu 267 295 -7 21 36 0 0 chr3 21426049 21426077 -196611081 + AT_rich Low_complexity Low_complexity 1 28 0 943 154 0 13 chr3 21426077 21426233 -196610925 - AluJb SINE Alu -24 288 135 2224 113 0 38 chr3 21426253 21426345 -196610813 + HSMAR2 DNA Mariner 4 98 -1204 1564 126 0 0 chr3 21426345 21426560 -196610598 + AluSg/x SINE Alu 85 299 -13 2224 113 0 38 chr3 21426560 21426813 -196610345 + HSMAR2 DNA Mariner 98 336 -966 1067 203 11 0 chr3 21426818 21426995 -196610163 + FAM SINE Alu 1 43 -6 4862 105 42 29 chr3 21426995 21427809 -196609349 + HSMAR2 DNA Mariner 339 1120 -182 246 139 0 0 chr3 21427809 21427845 -196609313 + Alu SINE Alu 2 37 -265 26 0 0 0 chr3 21428265 21428291 -196608867 + AT_rich Low_complexity Low_complexity 1 26 0 2183 98 3 0 chr3 21428318 21428604 -196608554 + AluSg SINE Alu 11 297 -13 550 154 29 0 chr3 21428772 21428876 -196608282 - HSMAR2 DNA Mariner -16 1286 1180 2265 122 0 0 chr3 21428876 21429188 -196607970 - AluSx SINE Alu 0 312 1 1040 297 88 22 chr3 21429301 21429792 -196607366 + L1MCc LINE L1 19 541 -5882 1124 252 110 23 chr3 21430072 21430375 -196606783 + L1MCc LINE L1 977 1252 -5650 279 0 0 0 chr3 21430375 21430406 -196606752 + (CA)n Simple_repeat Simple_repeat 2 32 0 1124 252 110 23 chr3 21430406 21431011 -196606147 + L1MCc LINE L1 1252 2013 -4889 * 2539 210 105 26 chr3 21431001 21431341 -196605817 + L1MCc LINE L1 3690 4002 -2939 279 0 0 0 chr3 21431341 21431372 -196605786 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 2539 210 105 26 chr3 21431372 21431849 -196605309 + L1MCc LINE L1 4002 4572 -2369 249 253 27 27 chr3 21432640 21432715 -196604443 - MIR SINE MIR -59 149 75 2421 97 50 6 chr3 21433147 21433488 -196603670 + L1PA14 LINE L1 5806 6161 0 2248 93 6 34 chr3 21433564 21433885 -196603273 + AluSq SINE Alu 1 312 -1 510 213 65 46 chr3 21433933 21434041 -196603117 + FLAM_A SINE Alu 1 110 -32 2247 219 75 67 chr3 21434099 21434758 -196602400 - L1MC4 LINE L1 -37 8005 7353 1628 157 0 75 chr3 21434758 21434920 -196602238 - AluJb SINE Alu -18 294 121 2236 93 14 0 chr3 21434920 21435209 -196601949 - AluSx SINE Alu -19 293 1 2058 108 47 7 chr3 21435212 21435508 -196601650 - AluSx SINE Alu -4 308 1 1628 157 0 75 chr3 21435508 21435659 -196601499 - AluJb SINE Alu -193 119 1 2247 219 75 67 chr3 21435659 21435780 -196601378 - L1MC4 LINE L1 -689 7353 7218 767 213 7 33 chr3 21435913 21436063 -196601095 + AluJo SINE Alu 2 147 -165 252 0 0 0 chr3 21436240 21436268 -196600890 + (A)n Simple_repeat Simple_repeat 1 28 0 21 36 0 0 chr3 21437349 21437377 -196599781 + AT_rich Low_complexity Low_complexity 1 28 0 1696 119 0 4 chr3 21437585 21437821 -196599337 - AluSx SINE Alu -77 235 1 789 125 0 0 chr3 21437894 21438006 -196599152 - AluSp/q SINE Alu -10 303 192 672 182 30 172 chr3 21438075 21438278 -196598880 + FAM SINE Alu 2 175 0 1626 183 3 43 chr3 21438299 21438622 -196598536 + AluJo SINE Alu 1 310 -2 1867 161 14 0 chr3 21438624 21438910 -196598248 + AluSx SINE Alu 5 294 -18 27 49 0 0 chr3 21438910 21438951 -196598207 + AT_rich Low_complexity Low_complexity 1 41 0 396 0 0 0 chr3 21438980 21439024 -196598134 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 2284 107 0 0 chr3 21439202 21439500 -196597658 + AluY SINE Alu 1 298 -13 2970 103 23 21 chr3 21439715 21440151 -196597007 + MLT2A1 LTR ERVL 1 437 -7 43778 71 17 8 chr3 21440165 21441106 -196596052 + HERVL-A1-A1 LTR ERVL 1 931 -4723 2326 88 0 3 chr3 21441106 21441402 -196595756 + AluSg SINE Alu 1 295 -15 43778 71 17 8 chr3 21441402 21443706 -196593452 + HERVL-A1-A1 LTR ERVL 931 3211 -2443 2190 82 7 0 chr3 21443706 21443975 -196593183 - AluSc SINE Alu -16 293 23 43778 71 17 8 chr3 21443975 21445109 -196592049 + HERVL-A1-A1 LTR ERVL 3211 4333 -1321 2298 88 0 14 chr3 21445109 21445429 -196591729 - AluSx SINE Alu 0 312 1 43778 71 17 8 chr3 21445429 21446647 -196590511 + HERVL-A1-A1 LTR ERVL 4333 5654 0 3120 83 57 5 chr3 21446647 21447069 -196590089 + MLT2A1 LTR ERVL 1 444 0 1833 109 0 86 chr3 21447293 21447597 -196589561 + AluSx SINE Alu 21 298 -14 1635 181 81 16 chr3 21447933 21448424 -196588734 + LTR27 LTR ERV1 3 501 0 312 255 128 0 chr3 21449488 21449582 -196587576 + MIR3 SINE MIR 67 172 -36 24 0 0 0 chr3 21449729 21449753 -196587405 + AT_rich Low_complexity Low_complexity 1 24 0 1353 154 0 5 chr3 21450489 21450697 -196586461 + AluJb SINE Alu 87 293 -19 2154 123 0 13 chr3 21452806 21453108 -196584050 - AluSx SINE Alu -14 298 1 210 71 0 0 chr3 21453501 21453529 -196583629 + (T)n Simple_repeat Simple_repeat 1 28 0 2182 121 6 85 chr3 21453873 21454237 -196582921 - MER1B DNA MER1_type 0 337 3 2283 94 3 26 chr3 21454546 21454855 -196582303 + AluSc SINE Alu 1 302 -7 1664 168 11 25 chr3 21455085 21455371 -196581787 + AluJo SINE Alu 1 282 -30 33 25 0 0 chr3 21455431 21455471 -196581687 + AT_rich Low_complexity Low_complexity 1 40 0 1494 190 40 13 chr3 21455632 21455932 -196581226 + AluJo SINE Alu 1 308 -4 1083 92 0 0 chr3 21456081 21456211 -196580947 - AluSq/x SINE Alu -178 134 5 223 313 34 88 chr3 21456215 21456362 -196580796 + L2 LINE L2 3116 3254 -18 1035 189 6 0 chr3 21456819 21456988 -196580170 - FAM SINE Alu -1 174 5 500 232 0 0 chr3 21457207 21457302 -196579856 - LTR16A1 LTR ERVL 0 457 363 535 219 37 88 chr3 21457327 21457367 -196579791 + L1M4 LINE L1 4541 4581 -1565 2364 97 0 7 chr3 21457367 21457675 -196579483 - AluSg SINE Alu -4 306 1 535 219 37 88 chr3 21457675 21457849 -196579309 + L1M4 LINE L1 4581 4744 -1402 244 230 81 14 chr3 21457851 21457925 -196579233 + MER116 DNA Mariner 2 80 0 198 0 0 0 chr3 21458014 21458036 -196579122 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 604 262 111 5 chr3 21458037 21458243 -196578915 + L1M4 LINE L1 4797 5025 -1121 315 217 0 0 chr3 21458361 21458421 -196578737 + FLAM_A SINE Alu 47 106 -27 340 241 101 70 chr3 21458463 21458638 -196578520 + HAL1 LINE L1 1482 1665 -842 2113 94 0 30 chr3 21458638 21458937 -196578221 + AluSc SINE Alu 1 290 -19 340 241 101 70 chr3 21458937 21458960 -196578198 + HAL1 LINE L1 1665 1686 -821 2318 95 0 3 chr3 21460058 21460362 -196576796 + AluSc SINE Alu 1 303 -6 467 259 133 30 chr3 21460409 21460767 -196576391 + MLT1J2 LTR MaLR 34 450 0 290 241 231 9 chr3 21460767 21460875 -196576283 - MIR3 SINE MIR -42 166 35 659 163 0 0 chr3 21460978 21461076 -196576082 - AluJb SINE Alu -9 303 206 1360 232 0 4 chr3 21461489 21461761 -196575397 + AluJo SINE Alu 10 280 -32 220 167 0 33 chr3 21461764 21461824 -196575334 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 2197 116 0 0 chr3 21461832 21462135 -196575023 + AluSx SINE Alu 1 303 -9 2415 93 0 3 chr3 21462160 21462470 -196574688 + AluSx SINE Alu 1 309 -3 290 281 61 0 chr3 21462538 21462620 -196574538 + L3 LINE CR1 1020 1106 -471 651 221 159 12 chr3 21462625 21462788 -196574370 + LTR41 LTR ERVL 1 187 -586 1797 109 8 8 chr3 21463278 21463590 -196573568 + AluSc SINE Alu 26 337 0 192 97 0 0 chr3 21664375 21664406 -196372752 + (ATG)n Simple_repeat Simple_repeat 3 33 0 412 289 100 75 chr3 21664767 21665277 -196371881 + L2 LINE L2 2727 3267 -5 1013 98 0 0 chr3 21665826 21665969 -196371189 - AluY SINE Alu -4 307 165 437 298 64 7 chr3 21666034 21666175 -196370983 + L2 LINE L2 3122 3270 -2 254 250 11 33 chr3 21666277 21666369 -196370789 + MLT1K LTR MaLR 449 538 -50 453 173 45 116 chr3 21666370 21666547 -196370611 + L1ME2 LINE L1 5669 5831 -333 692 240 15 56 chr3 21666547 21666743 -196370415 + MLT1B LTR MaLR 1 188 -186 202 200 0 0 chr3 21666744 21666779 -196370379 + C-rich Low_complexity Low_complexity 2 36 0 923 226 20 5 chr3 21666790 21666989 -196370169 + MLT1B LTR MaLR 189 390 0 1372 93 21 10 chr3 21667087 21667135 -196370023 - MER107 DNA MER1_type -1 196 150 237 65 0 0 chr3 21667135 21667166 -196369992 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1372 93 21 10 chr3 21667166 21667311 -196369847 - MER107 DNA MER1_type -47 150 1 1998 317 78 36 chr3 21667319 21667985 -196369173 - LTR8A LTR ERV1 0 727 34 659 261 40 22 chr3 21667991 21668016 -196369142 + L1ME2 LINE L1 5927 5950 -214 2343 53 0 0 chr3 21668016 21668323 -196368835 + AluY SINE Alu 1 307 0 659 261 40 22 chr3 21668323 21668522 -196368636 + L1ME2 LINE L1 5950 6156 -8 493 290 12 0 chr3 21668767 21668929 -196368229 + GA-rich Low_complexity Low_complexity 2 165 0 319 259 0 0 chr3 21670395 21670476 -196366682 + MIR SINE MIR 55 135 -127 221 221 10 0 chr3 21670904 21671008 -196366150 + (TG)n Simple_repeat Simple_repeat 2 106 0 299 126 35 11 chr3 21671188 21671275 -196365883 + (TG)n Simple_repeat Simple_repeat 2 90 0 210 277 12 0 chr3 21671294 21671377 -196365781 + (TG)n Simple_repeat Simple_repeat 2 85 0 287 366 66 36 chr3 21671493 21671796 -196365362 + L2 LINE L2 2988 3299 -14 239 316 72 36 chr3 21671803 21671942 -196365216 - L2 LINE L2 -27 3245 3102 200 244 139 23 chr3 21672117 21672203 -196364955 + MIR SINE MIR 5 100 -162 3864 153 70 9 chr3 21672274 21672973 -196364185 - Tigger3(Golem) DNA MER2_type -4 3025 2284 504 262 9 0 chr3 21672973 21673080 -196364078 - Tigger3(Golem) DNA MER2_type -2921 108 1 620 238 13 7 chr3 21673081 21673167 -196363991 - MIR SINE MIR -24 238 149 1677 175 0 38 chr3 21673167 21673487 -196363671 - AluJb SINE Alu -2 310 3 620 238 13 7 chr3 21673487 21673551 -196363607 - MIR SINE MIR -113 149 87 230 204 0 0 chr3 21674194 21674210 -196362948 - L2 LINE L2 -1 3312 3264 233 91 0 0 chr3 21674210 21674243 -196362915 - MIR SINE MIR -11 251 219 262 284 84 0 chr3 21674325 21674420 -196362738 + MIR SINE MIR 14 116 -146 252 320 39 0 chr3 21674469 21674572 -196362586 + L2 LINE L2 3004 3110 -162 438 291 64 41 chr3 21674585 21674757 -196362401 - MIR3 SINE MIR -16 192 17 439 295 13 20 chr3 21674774 21674923 -196362235 + MIR SINE MIR 3 150 -58 639 227 68 17 chr3 21675038 21675214 -196361944 + MIR SINE MIR 60 244 -18 261 176 59 12 chr3 21675408 21675493 -196361665 + Charlie7 DNA MER1_type 2450 2538 -74 292 331 84 7 chr3 21675588 21675730 -196361428 - MIR SINE MIR -35 227 75 483 170 0 0 chr3 21675840 21675940 -196361218 + (CA)n Simple_repeat Simple_repeat 2 101 0 2745 242 170 5 chr3 21676421 21677257 -196359901 - L1MDa LINE L1 -5341 1199 226 809 92 9 0 chr3 21677587 21677696 -196359462 + FRAM SINE Alu 50 159 -17 203 292 28 0 chr3 21677972 21678044 -196359114 - L2 LINE L2 -291 2981 2908 2116 172 7 63 chr3 21678162 21678574 -196358584 - MLT1B LTR MaLR -1 389 1 198 337 109 11 chr3 21678580 21678755 -196358403 - L2 LINE L2 -579 2735 2544 341 206 76 0 chr3 21678935 21679027 -196358131 + L1MDa LINE L1 1646 1744 -4796 293 300 3 10 chr3 21679110 21679243 -196357915 - L1P LINE L1 -2471 3675 3543 2927 182 30 17 chr3 21679301 21679900 -196357258 - L1ME1 LINE L1 -93 6073 5467 199 284 136 12 chr3 21680713 21680794 -196356364 - MIR SINE MIR -102 106 16 232 186 0 68 chr3 21681067 21681126 -196356032 - L2 LINE L2 -2 3270 3216 278 305 34 42 chr3 21681181 21681299 -196355859 + MIR SINE MIR 135 251 -11 387 278 161 22 chr3 21681389 21681569 -196355589 + MIR SINE MIR 2 206 -56 230 238 155 0 chr3 21681572 21681656 -196355502 + MLT1H LTR MaLR 8 104 -445 737 246 89 59 chr3 21681766 21682199 -196354959 - L1ME2 LINE L1 -144 6020 5579 684 194 14 58 chr3 21682202 21682341 -196354817 + FLAM_A SINE Alu 1 133 0 180 222 37 49 chr3 21682808 21682889 -196354269 - L2 LINE L2 -283 2989 2910 577 332 5 5 chr3 21682939 21683129 -196354029 - MIR SINE MIR -28 234 45 511 261 59 15 chr3 21683820 21684023 -196353135 - MER102a DNA MER1_type 0 330 119 180 0 0 0 chr3 21684023 21684043 -196353115 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1111 188 0 20 chr3 21684045 21684247 -196352911 - AluJb SINE Alu -30 282 85 338 281 30 30 chr3 21684247 21684382 -196352776 - MER102a DNA MER1_type -194 136 2 372 247 79 18 chr3 21684386 21684550 -196352608 - MIR SINE MIR -63 145 15 973 267 4 4 chr3 21684737 21684977 -196352181 + MIR SINE MIR 18 257 -5 2240 97 3 0 chr3 21684978 21685278 -196351880 + AluSp SINE Alu 1 301 -12 335 260 60 10 chr3 21685292 21685392 -196351766 - L2 LINE L2 -8 3305 3201 2309 75 23 0 chr3 21686298 21686604 -196350554 - AluSq SINE Alu 0 313 1 204 40 0 0 chr3 21686674 21686699 -196350459 + (GA)n Simple_repeat Simple_repeat 2 26 0 708 277 55 18 chr3 21686845 21687065 -196350093 - MIR SINE MIR -1 261 34 228 200 0 0 chr3 21687417 21687467 -196349691 + (TG)n Simple_repeat Simple_repeat 2 51 0 38 0 0 0 chr3 21687490 21687528 -196349630 + GC_rich Low_complexity Low_complexity 1 38 0 423 0 0 0 chr3 21688037 21688084 -196349074 + (TG)n Simple_repeat Simple_repeat 1 47 0 226 276 0 20 chr3 21688233 21688331 -196348827 + (TG)n Simple_repeat Simple_repeat 1 96 0 21 36 0 0 chr3 21688876 21688904 -196348254 + AT_rich Low_complexity Low_complexity 1 28 0 252 370 0 0 chr3 21688995 21689087 -196348071 + MIR SINE MIR 45 136 -72 479 269 17 8 chr3 21689593 21689712 -196347446 + MIR SINE MIR 25 144 -118 790 154 27 34 chr3 21689718 21689867 -196347291 - MLT2B3 LTR ERVL -274 280 133 258 273 13 13 chr3 21689927 21690004 -196347154 + MIR SINE MIR 151 227 -35 195 69 0 0 chr3 21690007 21690036 -196347122 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 186 43 0 0 chr3 21690070 21690093 -196347065 + (CAT)n Simple_repeat Simple_repeat 3 25 0 581 260 91 0 chr3 21690240 21690394 -196346764 - MIR SINE MIR -2 260 93 482 277 8 8 chr3 21690400 21690530 -196346628 - LTR67 LTR ERVL 0 557 428 2538 152 36 10 chr3 21690854 21691269 -196345889 - MSTB LTR MaLR 0 426 1 334 200 36 91 chr3 21691348 21691458 -196345700 - MLT1H LTR MaLR 0 549 446 * 2434 143 133 11 chr3 21691453 21691895 -196345263 - MLT2B3 LTR ERVL -58 496 1 539 269 93 16 chr3 21692001 21692183 -196344975 + MLT1L LTR MaLR 420 615 0 326 235 20 31 chr3 21692253 21692351 -196344807 - MIR SINE MIR -152 110 14 312 244 33 0 chr3 21692718 21692808 -196344350 + MER117 DNA MER1_type 1 93 -104 361 301 68 8 chr3 21692904 21693037 -196344121 + MIR3 SINE MIR 37 177 -31 394 222 16 48 chr3 21693902 21694028 -196343130 - MER5A DNA MER1_type -24 165 44 186 224 119 45 chr3 21694122 21694189 -196342969 - L3 LINE CR1 -136 1441 1370 841 138 0 0 chr3 21694463 21694586 -196342572 + FLAM_C SINE Alu 1 123 -20 341 270 20 0 chr3 21694699 21694799 -196342359 + MIR SINE MIR 42 143 -65 360 350 42 0 chr3 21695404 21695547 -196341611 + MIR SINE MIR 109 257 -5 1876 112 40 4 chr3 21695561 21695837 -196341321 + L1PB3 LINE L1 5867 6152 -2 529 189 101 162 chr3 21696321 21696649 -196340509 + MLT1K LTR MaLR 207 514 -74 359 305 51 0 chr3 21697121 21697239 -196339919 - MIR3 SINE MIR -76 132 9 274 289 22 0 chr3 21697329 21697419 -196339739 - L2 LINE L2 -250 3022 2931 807 262 87 0 chr3 21697468 21697674 -196339484 - MIR SINE MIR -19 243 20 3029 138 34 19 chr3 21698004 21698475 -196338683 + MER66A LTR ERV1 1 478 0 237 167 19 37 chr3 21698745 21698799 -196338359 - MIR SINE MIR -21 241 189 1044 167 5 30 chr3 21698810 21699008 -196338150 + AluJo SINE Alu 1 193 -119 3272 162 20 20 chr3 21699008 21699618 -196337540 - LTR5 LTR ERVK 0 969 360 288 200 0 0 chr3 21699723 21699793 -196337365 + GA-rich Low_complexity Low_complexity 2 71 0 898 95 0 0 chr3 21700185 21700311 -196336847 - L1MC/D LINE L1 -668 5665 5540 975 254 29 32 chr3 21700562 21700616 -196336542 - MER113 DNA MER1_type? -155 366 313 5610 126 51 5 chr3 21700616 21700703 -196336455 - L1MC1 LINE L1 -1 6332 6250 2882 129 19 2 chr3 21700703 21701122 -196336036 + MSTA LTR MaLR 1 426 -2 5610 126 51 5 chr3 21701122 21701878 -196335280 - L1MC1 LINE L1 -83 6250 5450 975 254 29 32 chr3 21701878 21702138 -196335020 - MER113 DNA MER1_type? -208 313 53 312 297 73 6 chr3 21702763 21702928 -196334230 + LTR16A1 LTR ERVL 193 368 -89 362 286 108 31 chr3 21703002 21703289 -196333869 - L2 LINE L2 -999 2315 2007 507 226 76 45 chr3 21704256 21704596 -196332562 - LTR23 LTR ERV1 -59 378 4 1481 240 66 33 chr3 21704632 21705119 -196332039 - MER90 LTR ERV1 -72 503 1 301 167 106 0 chr3 21705281 21705347 -196331811 - L1ME3 LINE L1 -66 6096 6024 259 289 133 15 chr3 21705392 21705527 -196331631 - L1ME3 LINE L1 -225 5941 5791 667 283 11 0 chr3 21705688 21705872 -196331286 + L1MC1 LINE L1 5053 5238 -908 1872 140 10 16 chr3 21706001 21706309 -196330849 + AluJo SINE Alu 1 306 -6 339 313 9 9 chr3 21706377 21706489 -196330669 - MIR SINE MIR -71 191 80 227 315 67 0 chr3 21707170 21707259 -196329899 + MIR SINE MIR 21 115 -147 227 309 209 0 chr3 21707410 21707520 -196329638 - L2 LINE L2 -2 3270 3138 213 350 111 20 chr3 21707940 21708237 -196328921 - L2 LINE L2 -29 3243 2920 894 284 108 27 chr3 21708435 21708878 -196328280 + L2 LINE L2 2830 3308 -5 323 346 44 6 chr3 21709472 21709654 -196327504 + L1MC1 LINE L1 5637 5825 -1983 256 312 46 28 chr3 21709982 21710091 -196327067 + MIR SINE MIR 35 145 -63 345 281 52 0 chr3 21710123 21710219 -196326939 + MER91C DNA MER1_type 38 138 -2 540 266 35 55 chr3 21710663 21710808 -196326350 + MIR SINE MIR 62 203 -59 1650 149 28 14 chr3 21710808 21711097 -196326061 + AluJo SINE Alu 4 296 -16 540 266 35 55 chr3 21711097 21711150 -196326008 + MIR SINE MIR 203 256 -6 1009 204 38 8 chr3 21711362 21711602 -196325556 + L1MC1 LINE L1 6004 6250 -83 426 262 136 22 chr3 21712770 21712996 -196324162 + MIR SINE MIR 7 247 -15 381 281 148 0 chr3 21713080 21713208 -196323950 + MIR SINE MIR 116 262 0 208 258 74 61 chr3 21713789 21713952 -196323206 + L2 LINE L2 2469 2633 -681 2434 227 122 82 chr3 21714099 21714430 -196322728 - MER69B DNA AcHobo -1339 1187 871 351 44 0 0 chr3 21714430 21714475 -196322683 + (CA)n Simple_repeat Simple_repeat 2 46 0 2434 227 122 82 chr3 21714475 21715285 -196321873 - MER69B DNA AcHobo -1655 871 1 359 219 133 19 chr3 21715285 21715390 -196321768 + MIR SINE MIR 116 232 -30 5267 113 20 75 chr3 21715390 21715805 -196321353 - Tigger1 DNA MER2_type 0 2418 1982 2228 120 3 0 chr3 21715805 21716106 -196321052 + AluSc SINE Alu 2 303 -6 5267 113 20 75 chr3 21716106 21716685 -196320473 - Tigger1 DNA MER2_type -436 1982 1479 6987 97 136 123 chr3 21716688 21718361 -196318797 - pTR5 LTR ERV1 0 2438 743 9076 122 21 18 chr3 21718361 21719082 -196318076 - Tigger1 DNA MER2_type -936 1482 765 2173 113 3 0 chr3 21719082 21719398 -196317760 + AluSx SINE Alu 1 317 0 9076 122 21 18 chr3 21719398 21720152 -196317006 - Tigger1 DNA MER2_type -1653 765 1 195 300 50 0 chr3 21720396 21720456 -196316702 - L3 LINE CR1 -99 1478 1416 829 271 146 10 chr3 21720850 21721284 -196315874 - L2 LINE L2 -59 3254 2754 368 281 73 0 chr3 21721755 21721851 -196315307 - MER91B DNA MER1_type -3 187 85 249 83 0 0 chr3 21722714 21722750 -196314408 + (CA)n Simple_repeat Simple_repeat 2 37 0 508 264 135 7 chr3 21722969 21723117 -196314041 + L3 LINE CR1 1375 1541 -36 189 222 0 0 chr3 21723113 21723149 -196314009 - L2 LINE L2 -20 3252 3217 * 505 236 90 28 chr3 21723165 21723343 -196313815 + MER117 DNA MER1_type 3 191 -6 386 239 215 23 chr3 21723354 21723484 -196313674 - MIR SINE MIR -105 157 3 2133 113 10 0 chr3 21724564 21724857 -196312301 + AluSx SINE Alu 1 296 -16 304 28 0 0 chr3 21726059 21726095 -196311063 - MER4A LTR ERV1 -75 589 554 2433 89 10 3 chr3 21726991 21727304 -196309854 - LTR5 LTR ERVK -654 315 1 310 148 56 0 chr3 21727305 21727357 -196309801 + AluJb SINE Alu 190 244 -58 3024 55 23 39 chr3 21727357 21727795 -196309363 + LTR7 LTR ERV1 1 431 -19 442 138 0 0 chr3 21727795 21727860 -196309298 + AluJb SINE Alu 225 289 -23 335 215 15 0 chr3 21727869 21727934 -196309224 - MIR SINE MIR -78 184 119 2059 110 13 41 chr3 21728160 21728293 -196308865 + AluSx SINE Alu 2 137 -175 2250 109 3 10 chr3 21728293 21728604 -196308554 + AluSc SINE Alu 1 309 0 2059 110 13 41 chr3 21728604 21728787 -196308371 + AluSx SINE Alu 137 309 -3 370 310 223 13 chr3 21728810 21729200 -196307958 + L1MC4a LINE L1 5419 5890 -1918 3738 219 51 47 chr3 21729210 21729260 -196307898 + L1MD2 LINE L1 5122 5170 -1189 1893 149 7 7 chr3 21729260 21729555 -196307603 + AluJo SINE Alu 1 295 -17 3738 219 51 47 chr3 21729555 21730718 -196306440 + L1MD2 LINE L1 5170 6347 -12 2192 150 40 6 chr3 21731003 21731356 -196305802 - MLT1A1 LTR MaLR 0 365 1 333 0 0 0 chr3 21731548 21731585 -196305573 + (CA)n Simple_repeat Simple_repeat 2 38 0 380 233 118 21 chr3 21731701 21731889 -196305269 - MIR SINE MIR -19 243 27 524 293 62 5 chr3 21732310 21732573 -196304585 + L1ME3A LINE L1 5724 6002 -168 200 286 36 36 chr3 21732654 21732738 -196304420 + MIR SINE MIR 108 191 -71 242 289 0 78 chr3 21733155 21733245 -196303913 + MIR3 SINE MIR 82 164 -44 1499 208 17 7 chr3 21733917 21734206 -196302952 - AluJo SINE Alu -12 300 9 281 252 48 48 chr3 21734662 21734765 -196302393 - L1ME LINE L1 -521 5643 5541 867 239 132 31 chr3 21734913 21735366 -196301792 - MLT1G1 LTR MaLR 0 595 10 2474 104 109 3 chr3 21735618 21736004 -196301154 - MSTA LTR MaLR 0 428 2 268 256 78 56 chr3 21736287 21736377 -196300781 - L2 LINE L2 -186 3086 2995 806 154 19 39 chr3 21736377 21736533 -196300625 + AluJb SINE Alu 38 190 -122 3899 132 37 55 chr3 21736533 21737258 -196299900 + MER50 LTR ERV1 1 712 -22 703 146 18 0 chr3 21737261 21737371 -196299787 + AluJb SINE Alu 190 301 -11 281 267 103 27 chr3 21738995 21739141 -196298017 + L1ME4a LINE L1 5733 5889 -232 635 285 131 23 chr3 21739222 21739767 -196297391 + L2 LINE L2 2388 3036 -236 1176 264 82 9 chr3 21740195 21740536 -196296622 + MLT1K LTR MaLR 215 580 -8 2353 286 62 26 chr3 21741506 21741646 -196295512 + L1ME3 LINE L1 3901 4035 -2111 180 0 0 0 chr3 21741646 21741666 -196295492 + (CA)n Simple_repeat Simple_repeat 1 20 0 2353 286 62 26 chr3 21741666 21742678 -196294480 + L1ME3 LINE L1 4035 5094 -1052 559 224 59 46 chr3 21742683 21742776 -196294382 + L1ME3 LINE L1 5209 5299 -863 1828 167 3 22 chr3 21742776 21743087 -196294071 + AluJb SINE Alu 1 305 -7 559 224 59 46 chr3 21743087 21743248 -196293910 + L1ME3 LINE L1 5299 5470 -692 628 294 78 36 chr3 21743276 21743633 -196293525 + LTR16A LTR ERVL 76 447 -3 1297 226 83 92 chr3 21743645 21744308 -196292850 + L1ME3 LINE L1 5506 6162 0 197 250 0 0 chr3 21744342 21744382 -196292776 - MIR SINE MIR -1 261 222 261 0 0 0 chr3 21744414 21744443 -196292715 + (CA)n Simple_repeat Simple_repeat 1 29 0 410 297 11 0 chr3 21744470 21744645 -196292513 + (CA)n Simple_repeat Simple_repeat 2 178 0 261 239 29 145 chr3 21744906 21744977 -196292181 - L2 LINE L2 -555 2759 2710 1983 156 0 9 chr3 21744977 21745292 -196291866 + AluJb SINE Alu 1 312 0 261 239 29 145 chr3 21745292 21745358 -196291800 - L2 LINE L2 -604 2710 2638 848 158 0 0 chr3 21745704 21745837 -196291321 - FLAM_A SINE Alu 0 133 1 531 242 87 34 chr3 21745837 21746101 -196291057 + MER102b DNA MER1_type 63 340 -1 683 275 143 45 chr3 21746121 21746461 -196290697 + L1ME3 LINE L1 5477 5869 -293 231 114 0 0 chr3 21746461 21746496 -196290662 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 683 275 143 45 chr3 21746496 21746581 -196290577 + L1ME3 LINE L1 5869 5944 -218 37 69 0 0 chr3 21746752 21746824 -196290334 + AT_rich Low_complexity Low_complexity 1 72 0 2011 160 0 3 chr3 21746824 21747131 -196290027 + AluJb SINE Alu 1 306 -6 2175 239 46 75 chr3 21747167 21747329 -196289829 - L1ME2 LINE L1 -32 6132 5967 1903 114 3 42 chr3 21747329 21747644 -196289514 - AluSx SINE Alu 0 308 5 2175 239 46 75 chr3 21747644 21748354 -196288804 - L1ME2 LINE L1 -197 5967 5238 2328 110 0 0 chr3 21748354 21748662 -196288496 - AluSx SINE Alu -4 308 1 2175 239 46 75 chr3 21748662 21748727 -196288431 - L1ME2 LINE L1 -926 5238 5173 330 26 0 0 chr3 21748727 21748766 -196288392 + (CA)n Simple_repeat Simple_repeat 2 40 0 2175 239 46 75 chr3 21748766 21749094 -196288064 - L1ME2 LINE L1 -991 5173 4891 1242 145 16 57 chr3 21749094 21749342 -196287816 + AluJo SINE Alu 1 238 -74 312 281 47 31 chr3 21749480 21749608 -196287550 - L2 LINE L2 -24 3248 3119 238 239 0 0 chr3 21749695 21749741 -196287417 + L3 LINE CR1 892 937 -640 668 306 125 4 chr3 21750623 21750904 -196286254 - L2 LINE L2 -2 3270 2956 407 245 71 5 chr3 21751008 21751162 -196285996 + MIR SINE MIR 14 171 -61 387 260 177 21 chr3 21751871 21752063 -196285095 - MIR SINE MIR -13 249 28 210 282 154 0 chr3 21752073 21752190 -196284968 - MIR3 SINE MIR -29 179 45 312 239 77 34 chr3 21752533 21752650 -196284508 + MLT1K LTR MaLR 167 288 -300 302 301 68 28 chr3 21752912 21753088 -196284070 - MLT1L LTR MaLR -221 394 212 729 0 0 0 chr3 21753125 21753206 -196283952 + (TTTTA)n Simple_repeat Simple_repeat 1 81 0 1803 162 0 14 chr3 21753206 21753490 -196283668 - AluJo SINE Alu -32 280 1 532 211 102 0 chr3 21754168 21754296 -196282862 + MIR SINE MIR 109 249 -13 751 133 0 0 chr3 21754325 21754430 -196282728 - FLAM_A SINE Alu -13 129 25 1513 217 65 5 chr3 21755004 21755373 -196281785 - MLT1J2 LTR MaLR -22 428 38 380 364 6 6 chr3 21755431 21755593 -196281565 + L2 LINE L2 2625 2786 -528 781 220 70 5 chr3 21756031 21756217 -196280941 + MER63A DNA MER1_type 3 200 -10 500 283 17 0 chr3 21756230 21756376 -196280782 - MIR SINE MIR -42 166 14 249 302 0 31 chr3 21756387 21756483 -196280675 + L2 LINE L2 2965 3057 -215 239 167 21 21 chr3 21757142 21757190 -196279968 - MIR SINE MIR -65 143 96 211 235 15 29 chr3 21757181 21757249 -196279909 + L2 LINE L2 2938 3004 -309 * 473 323 56 5 chr3 21757319 21757514 -196279644 + MIR SINE MIR 50 254 -8 184 301 26 92 chr3 21758234 21758387 -196278771 - MIR3 SINE MIR -34 174 32 1646 144 41 0 chr3 21759031 21759302 -196277856 + AluJo SINE Alu 21 302 -10 2835 158 17 30 chr3 21759643 21759957 -196277201 + L1MB8 LINE L1 5647 5953 -225 1479 195 152 83 chr3 21759957 21760556 -196276602 - LTR48B LTR ERV1 0 644 5 2835 158 17 30 chr3 21760556 21760780 -196276378 + L1MB8 LINE L1 5953 6178 0 1355 222 74 15 chr3 21760797 21761202 -196275956 - MLT1C LTR MaLR -5 462 34 259 70 93 0 chr3 21761349 21761392 -196275766 - L2 LINE L2 -210 3062 3016 419 294 40 0 chr3 21761403 21761529 -196275629 + MER94 DNA DNA 3 133 -1 251 224 0 53 chr3 21761563 21761639 -196275519 - L2 LINE L2 -285 2987 2916 275 49 24 0 chr3 21762135 21762176 -196274982 + (TG)n Simple_repeat Simple_repeat 2 43 0 1016 270 146 33 chr3 21762556 21763096 -196274062 + L2 LINE L2 2034 2634 -680 653 203 0 7 chr3 21763298 21763451 -196273707 + GA-rich Low_complexity Low_complexity 4 155 0 4184 237 55 20 chr3 21763592 21763753 -196273405 + L1MDa LINE L1 2452 2606 -3934 2201 60 45 0 chr3 21763753 21764050 -196273108 + AluY SINE Alu 1 309 0 4184 237 55 20 chr3 21764050 21765376 -196271782 + L1MDa LINE L1 2606 4004 -2536 1208 221 39 66 chr3 21765377 21765784 -196271374 - MLT2C1 LTR ERVL -1 396 1 3068 170 97 2 chr3 21765784 21766390 -196270768 - ERVL-C1 LTR ERVL -8 5756 5093 506 252 97 53 chr3 21766392 21766458 -196270700 - ERVL-C1 LTR ERVL -5548 216 154 2209 155 9 6 chr3 21766458 21766794 -196270364 + MER1B DNA MER1_type 1 337 0 506 252 97 53 chr3 21766794 21766933 -196270225 - ERVL-C1 LTR ERVL -5610 154 2 947 233 72 4 chr3 21766934 21767196 -196269962 - MLT2C1 LTR ERVL 0 397 118 247 294 135 24 chr3 21767498 21767624 -196269534 - MIR SINE MIR -74 188 49 1090 286 10 13 chr3 21767776 21768080 -196269078 + MLT1K LTR MaLR 170 472 -116 258 265 0 29 chr3 21768132 21768200 -196268958 - L3 LINE CR1 -197 1380 1315 185 260 20 20 chr3 21768220 21768270 -196268888 + MIR SINE MIR 29 78 -184 373 301 49 0 chr3 21768382 21768505 -196268653 + L2 LINE L2 3176 3304 -9 818 252 172 54 chr3 21769283 21769328 -196267830 + L2 LINE L2 2677 2715 -598 1280 173 13 18 chr3 21769328 21769553 -196267605 - MER58A DNA MER1_type 0 224 1 818 252 172 54 chr3 21769553 21770071 -196267087 + L2 LINE L2 2715 3313 0 423 359 39 9 chr3 21770091 21770322 -196266836 + L2 LINE L2 2618 2855 -459 180 321 38 0 chr3 21771507 21771560 -196265598 - L2 LINE L2 -48 3224 3170 913 0 27 0 chr3 21771571 21771683 -196265475 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 1934 141 3 7 chr3 21771685 21771969 -196265189 - AluSx SINE Alu -29 283 1 309 317 49 0 chr3 21771984 21772107 -196265051 - L3 LINE CR1 -73 1504 1376 291 272 272 0 chr3 21772589 21772714 -196264444 - MIR3 SINE MIR -8 200 42 2733 273 138 24 chr3 21772958 21774394 -196262764 - L2 LINE L2 -5 3308 1710 241 384 10 10 chr3 21774701 21774800 -196262358 - L2 LINE L2 -213 3059 2961 257 154 0 0 chr3 21774806 21774845 -196262313 - HERVK3 LTR ERVK -7203 40 2 2112 175 49 15 chr3 21774855 21775266 -196261892 - LTR3 LTR ERVK -3 429 5 7048 101 0 1 chr3 21775270 21776251 -196260907 - HERVK3 LTR ERVK 0 7243 6264 4020 130 21 0 chr3 21776246 21776906 -196260252 - HERVK3 LTR ERVK -1885 5358 4685 * 3592 131 2 7 chr3 21776905 21777471 -196259687 - HERVK3 LTR ERVK -2936 4307 3745 * 9101 114 11 5 chr3 21777459 21778839 -196258319 - HERVK3 LTR ERVK -4498 2745 1358 4541 114 36 15 chr3 21778845 21779575 -196257583 - HERVK3 LTR ERVK -6469 774 30 2174 167 27 15 chr3 21779600 21780007 -196257151 - LTR3 LTR ERVK -16 416 5 509 242 73 0 chr3 21780259 21780424 -196256734 - LTR16C LTR ERVL -2 489 313 561 263 6 29 chr3 21780482 21780653 -196256505 - LTR16C LTR ERVL -289 202 36 4606 218 78 43 chr3 21781432 21785296 -196251862 + L1M4 LINE L1 10 4046 -2598 257 274 123 9 chr3 21785424 21785530 -196251628 + MIR SINE MIR 42 159 -103 219 226 16 32 chr3 21785803 21785865 -196251293 + MIR SINE MIR 181 241 -21 2055 272 58 8 chr3 21786340 21787047 -196250111 - L1ME3A LINE L1 -5 6165 5424 411 195 153 34 chr3 21787139 21787257 -196249901 - MIR SINE MIR -57 205 74 182 281 53 35 chr3 21787391 21787448 -196249710 + MIR SINE MIR 87 144 -64 545 257 131 0 chr3 21787507 21787682 -196249476 - MIR SINE MIR -16 246 49 3128 160 19 14 chr3 21787839 21788427 -196248731 + L1MB7 LINE L1 5592 6182 -2 305 228 0 0 chr3 21788694 21788751 -196248407 - L2 LINE L2 -1 3271 3215 345 260 14 0 chr3 21788854 21788927 -196248231 - L2 LINE L2 -2 3311 3238 * 603 307 97 25 chr3 21788921 21789159 -196247999 + MIR SINE MIR 7 261 -1 702 211 62 37 chr3 21789382 21789543 -196247615 - FRAM SINE Alu 0 166 2 490 243 62 22 chr3 21789768 21789964 -196247194 - MIR SINE MIR -54 208 1 191 277 77 0 chr3 21790051 21790116 -196247042 + MIR SINE MIR 77 146 -62 627 193 28 39 chr3 21790380 21790561 -196246597 + MER53 DNA DNA 2 180 -9 1634 253 111 93 chr3 21791246 21791315 -196245843 - MER45C DNA AcHobo -628 953 887 1932 163 30 0 chr3 21791315 21791616 -196245542 - AluJb SINE Alu -2 310 1 1634 253 111 93 chr3 21791616 21792335 -196244823 - MER45C DNA AcHobo -694 887 182 2120 110 3 0 chr3 21792335 21792617 -196244541 + AluY SINE Alu 1 283 -28 273 98 0 0 chr3 21792617 21792658 -196244500 + (CA)n Simple_repeat Simple_repeat 2 42 0 1741 192 10 0 chr3 21792664 21792956 -196244202 + AluJb SINE Alu 1 295 -17 1634 253 111 93 chr3 21792956 21793047 -196244111 - MER45C DNA AcHobo -1403 178 49 354 334 90 55 chr3 21793082 21793426 -196243732 + L2 LINE L2 2914 3269 -3 185 309 211 25 chr3 21793416 21793733 -196243425 - L2 LINE L2 -339 2975 2600 * 231 257 148 30 chr3 21794515 21794616 -196242542 - L2 LINE L2 -19 3253 3141 257 245 219 26 chr3 21794808 21794959 -196242199 - MER5A DNA MER1_type -6 183 4 394 294 9 0 chr3 21795976 21796085 -196241073 + MER81 DNA DNA 2 111 -3 284 245 113 50 chr3 21796346 21796505 -196240653 + MIR3 SINE MIR 3 171 -37 584 200 73 0 chr3 21796705 21796855 -196240303 - L2 LINE L2 -253 3060 2900 204 158 0 0 chr3 21797249 21797287 -196239871 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 1769 183 14 3 chr3 21797791 21798086 -196239072 + AluJb SINE Alu 3 300 -12 2874 138 21 29 chr3 21798086 21798601 -196238557 + L1MB3 LINE L1 5666 6176 -7 1450 276 98 25 chr3 21798632 21799351 -196237807 + L1ME1 LINE L1 5350 6128 -38 1971 149 41 39 chr3 21799351 21799740 -196237418 + MLT1B LTR MaLR 1 390 0 1450 276 98 25 chr3 21799740 21799778 -196237380 + L1ME1 LINE L1 6128 6162 -4 2232 90 7 3 chr3 21799792 21800081 -196237077 - AluSg SINE Alu -20 290 1 262 283 19 0 chr3 21800392 21800490 -196236668 - MIR SINE MIR -62 146 69 226 373 81 0 chr3 21800969 21801154 -196236004 + L2 LINE L2 3024 3223 -49 275 311 42 8 chr3 21801181 21801300 -196235858 + MIR SINE MIR 23 146 -62 629 261 89 0 chr3 21801558 21801715 -196235443 - MIR SINE MIR -2 260 90 190 256 171 0 chr3 21801711 21801793 -196235365 - L2 LINE L2 -269 3003 2908 * 1704 125 23 4 chr3 21802527 21802710 -196234448 - AluSx SINE Alu 0 316 124 441 0 0 0 chr3 21802710 21802759 -196234399 + (TG)n Simple_repeat Simple_repeat 2 50 0 1704 125 23 4 chr3 21802759 21802864 -196234294 - AluSx SINE Alu -192 124 23 342 297 34 17 chr3 21803471 21803589 -196233569 - MIR SINE MIR -110 152 33 1853 128 62 24 chr3 21804111 21804399 -196232759 + AluSx SINE Alu 1 299 -13 376 271 42 0 chr3 21804562 21804658 -196232500 + MIR SINE MIR 44 143 -119 1871 175 0 13 chr3 21804957 21804973 -196232185 - AluJo SINE Alu -8 304 289 243 0 0 0 chr3 21804973 21805000 -196232158 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 1871 175 0 13 chr3 21805000 21805291 -196231867 - AluJo SINE Alu -23 289 1 434 344 45 18 chr3 21805550 21805771 -196231387 - MIR SINE MIR -16 246 20 315 143 95 0 chr3 21806098 21806161 -196230997 - MIR3 SINE MIR -26 182 114 2643 40 0 0 chr3 21806367 21806665 -196230493 + AluY SINE Alu 1 298 -13 214 364 16 8 chr3 21807319 21807440 -196229718 + (CTAGGG)n Simple_repeat Simple_repeat 2 123 0 2121 110 0 21 chr3 21807460 21807781 -196229377 - AluSx SINE Alu 0 315 1 232 266 178 47 chr3 21808589 21808758 -196228400 - MIR3 SINE MIR -11 197 7 488 329 0 0 chr3 21809076 21809213 -196227945 - MIR SINE MIR -89 173 37 185 321 0 0 chr3 21809507 21809563 -196227595 + L3 LINE CR1 1400 1455 -122 216 380 75 29 chr3 21810317 21810664 -196226494 - L2 LINE L2 -337 2977 2615 313 261 123 31 chr3 21810765 21810895 -196226263 - MIR3 SINE MIR -62 146 5 300 314 78 10 chr3 21811224 21811326 -196225832 + L2 LINE L2 3205 3313 0 358 290 73 8 chr3 21811353 21811477 -196225681 + MIR SINE MIR 8 139 -123 1090 268 28 0 chr3 21811530 21811784 -196225374 + MIR SINE MIR 1 261 -1 2238 93 3 6 chr3 21812175 21812486 -196224672 - AluY SINE Alu -1 310 1 444 279 22 7 chr3 21812649 21812785 -196224373 - MIR SINE MIR -111 151 14 327 256 12 0 chr3 21812788 21812870 -196224288 - MER5B DNA MER1_type -7 171 89 256 300 0 0 chr3 21813153 21813223 -196223935 - MIR SINE MIR -58 150 81 511 274 41 7 chr3 21814046 21814192 -196222966 + MIR SINE MIR 52 202 -60 315 321 102 27 chr3 21814516 21814926 -196222232 + L2 LINE L2 2560 3017 -255 822 253 154 7 chr3 21814929 21815214 -196221944 - MLT1G1 LTR MaLR -267 328 2 294 362 21 0 chr3 21816273 21816367 -196220791 - L2 LINE L2 -9 3263 3168 304 275 64 18 chr3 21816405 21816514 -196220644 - L2 LINE L2 -233 3039 2926 649 292 108 20 chr3 21816708 21817335 -196219823 - L2 LINE L2 -171 3142 2462 219 69 0 0 chr3 21817341 21817370 -196219788 + (GGGGA)n Simple_repeat Simple_repeat 1 29 0 270 288 45 30 chr3 21817401 21817533 -196219625 - MER117 DNA MER1_type -32 165 32 555 307 92 9 chr3 21818311 21818529 -196218629 + MIR SINE MIR 27 262 0 381 319 77 6 chr3 21818641 21818810 -196218348 + MIR3 SINE MIR 6 186 -22 57 16 0 0 chr3 21818850 21818914 -196218244 + AT_rich Low_complexity Low_complexity 1 64 0 313 270 65 32 chr3 21819020 21819205 -196217953 + L2 LINE L2 2880 3070 -202 226 286 184 27 chr3 21819378 21819525 -196217633 + MIR SINE MIR 39 208 -54 481 300 64 5 chr3 21819624 21819826 -196217332 - MER113 DNA MER1_type? -188 333 116 1261 215 6 93 chr3 21819826 21820147 -196217011 + AluJo SINE Alu 2 294 -8 481 300 64 5 chr3 21820147 21820164 -196216994 - MER113 DNA MER1_type? -405 116 101 502 344 85 31 chr3 21820183 21820407 -196216751 + MIR SINE MIR 7 242 -20 248 172 86 52 chr3 21820718 21820776 -196216382 + MIR SINE MIR 103 162 -100 418 298 16 8 chr3 21821128 21821252 -196215906 + MIR SINE MIR 75 199 -63 370 323 8 8 chr3 21821724 21821848 -196215310 + MIR SINE MIR 21 144 -118 689 332 10 0 chr3 21821994 21822193 -196214965 - MIR SINE MIR -57 205 5 295 330 29 0 chr3 21822184 21822287 -196214871 - MIR SINE MIR -94 168 63 * 206 125 0 25 chr3 21822651 21822691 -196214467 + (TC)n Simple_repeat Simple_repeat 2 40 0 243 133 0 0 chr3 21823540 21823585 -196213573 + (TC)n Simple_repeat Simple_repeat 2 46 0 324 279 31 31 chr3 21823788 21823917 -196213241 - MIR SINE MIR -116 146 18 211 331 121 8 chr3 21824601 21824725 -196212433 - MIR3 SINE MIR -65 143 6 215 373 0 0 chr3 21824730 21824797 -196212361 + L2 LINE L2 3206 3272 0 226 271 17 0 chr3 21824859 21824918 -196212240 - MIR SINE MIR -92 170 111 267 336 0 28 chr3 21825255 21825362 -196211796 + MIR SINE MIR 68 171 -91 360 292 21 14 chr3 21825401 21825545 -196211613 + L1ME3A LINE L1 5794 5938 -232 2178 111 0 0 chr3 21825687 21825985 -196211173 - AluSx SINE Alu -14 298 1 550 211 63 28 chr3 21826143 21826285 -196210873 + MIR SINE MIR 84 230 -32 182 305 76 25 chr3 21826735 21826853 -196210305 + MIR SINE MIR 60 183 -79 213 240 53 13 chr3 21826992 21827067 -196210091 + L2 LINE L2 2985 3062 -210 328 292 94 0 chr3 21827295 21827391 -196209767 + L2 LINE L2 3150 3254 -18 1817 209 95 22 chr3 21827452 21827945 -196209213 + MLT1F LTR MaLR 12 540 -2 185 170 128 0 chr3 21828480 21828527 -196208631 - L2 LINE L2 -6 3266 3214 548 284 56 30 chr3 21828569 21828766 -196208392 + L2 LINE L2 2592 2793 -521 991 228 114 28 chr3 21829001 21829396 -196207762 + L1ME2 LINE L1 5736 6164 0 245 30 0 0 chr3 21829455 21829488 -196207670 + Alu SINE Alu 177 209 -93 248 64 0 21 chr3 21829489 21829536 -196207622 - Alu SINE Alu -1 301 256 1018 176 0 21 chr3 21829636 21829649 -196207509 + AluJo SINE Alu 124 136 -176 2143 115 3 0 chr3 21829649 21829945 -196207213 + AluSx SINE Alu 1 297 -15 1018 176 0 21 chr3 21829945 21830118 -196207040 + AluJo SINE Alu 136 306 -6 312 342 61 18 chr3 21830118 21830232 -196206926 + L1MD3 LINE L1 7658 7776 -219 575 188 0 8 chr3 21830252 21830380 -196206778 + GA-rich Low_complexity Low_complexity 3 129 0 236 300 159 12 chr3 21830416 21830673 -196206485 + L1MC4 LINE L1 7722 8016 -26 296 289 67 10 chr3 21830712 21830816 -196206342 + L2 LINE L2 2767 2876 -438 258 227 0 0 chr3 21830828 21830903 -196206255 + (CA)n Simple_repeat Simple_repeat 2 76 0 381 252 19 9 chr3 21830994 21831101 -196206057 - MLT1L LTR MaLR -341 274 167 209 283 19 0 chr3 21831316 21831369 -196205789 - MIR SINE MIR -62 146 93 193 262 75 47 chr3 21831887 21831994 -196205164 - L3b LINE CR1 -125 1458 1349 2135 125 0 7 chr3 21833435 21833739 -196203419 + AluSx SINE Alu 1 302 -10 410 271 256 0 chr3 21833862 21833995 -196203163 + MIR SINE MIR 31 197 -65 2122 113 3 3 chr3 21834144 21834446 -196202712 - AluSg SINE Alu -8 302 1 264 342 17 17 chr3 21834562 21834679 -196202479 - MIR SINE MIR -79 183 67 395 312 68 30 chr3 21834970 21835233 -196201925 + L2 LINE L2 1853 2125 -1189 248 241 190 0 chr3 21835487 21835566 -196201592 - MIR SINE MIR -7 255 162 379 271 29 24 chr3 21835579 21835749 -196201409 - MLT1H LTR MaLR -1 548 378 435 75 0 0 chr3 21835787 21835840 -196201318 + AluSq SINE Alu 123 175 -138 252 256 207 0 chr3 21835884 21835966 -196201192 - MLT1L LTR MaLR -380 169 71 489 328 74 4 chr3 21836475 21836704 -196200454 + MIR SINE MIR 17 261 -1 463 258 94 103 chr3 21836719 21836893 -196200265 - MER46C DNA MER2_type -3 335 164 790 161 0 29 chr3 21836893 21837030 -196200128 + FLAM_C SINE Alu 1 133 0 463 258 94 103 chr3 21837030 21837184 -196199974 - MER46C DNA MER2_type -174 164 10 2268 108 0 0 chr3 21837200 21837497 -196199661 - AluSx SINE Alu -15 297 1 495 244 106 19 chr3 21837515 21837675 -196199483 + MER5B DNA MER1_type 2 175 -3 263 320 103 26 chr3 21837722 21837916 -196199242 - L2 LINE L2 -212 3060 2852 2167 117 0 0 chr3 21838124 21838424 -196198734 - AluSx SINE Alu -12 300 1 1934 201 66 9 chr3 21838765 21839203 -196197955 + MLT1C LTR MaLR 1 463 -4 621 270 93 17 chr3 21839206 21839495 -196197663 + MER113 DNA MER1_type? 62 372 -149 210 118 0 0 chr3 21839495 21839529 -196197629 + (TTCTCC)n Simple_repeat Simple_repeat 1 34 0 2009 142 3 6 chr3 21839529 21839840 -196197318 - AluSq SINE Alu -2 311 2 1124 126 0 88 chr3 21839893 21839988 -196197170 + L1MA4 LINE L1 6083 6185 -115 2021 118 35 0 chr3 21839988 21840276 -196196882 - AluSx SINE Alu -14 298 1 1124 126 0 88 chr3 21840276 21840419 -196196739 + L1MA4 LINE L1 6185 6300 0 329 301 0 11 chr3 21840511 21840604 -196196554 - MIR SINE MIR -61 147 56 318 320 20 0 chr3 21841173 21841273 -196195885 + MIR SINE MIR 151 252 -10 2139 112 3 0 chr3 21841371 21841696 -196195462 + AluSp SINE Alu 1 313 0 885 279 134 53 chr3 21841764 21842399 -196194759 + MER115 DNA AcHobo 2 687 -6 412 326 28 22 chr3 21842870 21843051 -196194107 - MIR SINE MIR -74 188 7 268 82 20 20 chr3 21843561 21843610 -196193548 + (GAA)n Simple_repeat Simple_repeat 1 49 0 344 172 118 21 chr3 21843626 21843719 -196193439 + MER5B DNA MER1_type 72 173 -5 805 179 87 0 chr3 21843734 21843907 -196193251 - MER5A DNA MER1_type 0 189 2 206 311 0 16 chr3 21843931 21843992 -196193166 + MER5A DNA MER1_type 16 75 -114 753 180 0 0 chr3 21843993 21844115 -196193043 + FLAM_C SINE Alu 6 127 -16 785 98 80 0 chr3 21844118 21844230 -196192928 + 5S rRNA rRNA 1 121 0 2168 111 10 0 chr3 21844236 21844542 -196192616 + AluSg SINE Alu 1 309 -1 1141 143 0 11 chr3 21844552 21844727 -196192431 + AluJb SINE Alu 5 177 -135 652 234 65 56 chr3 21895061 21895275 -196141883 - AluJb SINE Alu 0 312 97 483 253 142 0 chr3 21895484 21895646 -196141512 - MIR SINE MIR -31 231 47 196 325 75 33 chr3 21898491 21898611 -196138547 - L2 LINE L2 -1 3271 3147 607 311 70 25 chr3 21898874 21899118 -196138040 - MIR SINE MIR -1 261 7 181 228 18 35 chr3 21899328 21899385 -196137773 - MIR SINE MIR -71 137 82 183 226 75 0 chr3 21899485 21899538 -196137620 + MIR SINE MIR 94 150 -58 287 347 41 37 chr3 21901335 21901580 -196135578 + L2 LINE L2 2844 3089 -183 595 229 76 0 chr3 21901599 21901756 -196135402 - MIR SINE MIR -11 251 83 192 324 14 14 chr3 21901775 21901849 -196135309 + L2 LINE L2 3240 3313 0 221 258 86 21 chr3 21901897 21901990 -196135168 - MIR SINE MIR -104 158 60 704 179 8 0 chr3 21903317 21903440 -196133718 + Tigger4(Zombi) DNA MER2_type 1 124 -2607 * 1122 153 16 0 chr3 21903439 21903622 -196133536 + Tigger4(Zombi) DNA MER2_type 2543 2728 -3 246 306 6 57 chr3 21905063 21905220 -196131938 + L2 LINE L2 3028 3176 -96 181 182 91 36 chr3 21906616 21906671 -196130487 - MIR SINE MIR -88 174 117 346 323 76 5 chr3 21907602 21907800 -196129358 - MIR SINE MIR -33 229 18 22 0 0 0 chr3 21908319 21908341 -196128817 + AT_rich Low_complexity Low_complexity 1 22 0 850 136 0 0 chr3 21908348 21908473 -196128685 - FLAM_C SINE Alu -18 125 1 369 297 86 17 chr3 21908475 21908650 -196128508 + MLT1K LTR MaLR 84 270 -318 474 212 13 13 chr3 21908691 21908842 -196128316 + GA-rich Low_complexity Low_complexity 2 152 0 780 256 52 34 chr3 21908842 21909111 -196128047 + MLT1K LTR MaLR 277 550 -38 22 0 0 0 chr3 21909451 21909473 -196127685 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr3 21909492 21909519 -196127639 + (T)n Simple_repeat Simple_repeat 1 27 0 2209 238 8 49 chr3 21909540 21910136 -196127022 - L1ME2 LINE L1 -34 6130 5559 420 266 187 5 chr3 21910622 21910825 -196126333 + MIR SINE MIR 21 260 -2 383 235 49 0 chr3 21911217 21911319 -196125839 - MIR SINE MIR -117 145 39 245 197 30 15 chr3 21911614 21911680 -196125478 + (TA)n Simple_repeat Simple_repeat 2 68 0 186 43 0 0 chr3 21911681 21911704 -196125454 + (CA)n Simple_repeat Simple_repeat 2 24 0 387 326 25 36 chr3 21911771 21911940 -196125218 + MIR SINE MIR 7 170 -50 189 289 0 0 chr3 21912192 21912230 -196124928 - L2 LINE L2 -22 3291 3254 194 301 14 14 chr3 21912288 21912361 -196124797 - MIR SINE MIR -170 92 20 191 271 82 0 chr3 21912375 21912460 -196124698 + MIR SINE MIR 59 150 -58 26 50 0 0 chr3 21914226 21914266 -196122892 + GC_rich Low_complexity Low_complexity 1 40 0 198 306 16 0 chr3 21914331 21914393 -196122765 - MIR SINE MIR -61 147 85 417 327 57 9 chr3 21914647 21914858 -196122300 - MIR SINE MIR -10 252 32 265 325 52 45 chr3 21915163 21915317 -196121841 - MIR3 SINE MIR -3 205 51 240 316 206 16 chr3 21915913 21916192 -196120966 + L2 LINE L2 2921 3305 -8 283 218 195 0 chr3 21916414 21916501 -196120657 - L2 LINE L2 -5 3267 3164 4108 100 34 0 chr3 21917470 21918031 -196119127 + LTR19B LTR ERV1 1 580 0 990 258 183 14 chr3 21918068 21918490 -196118668 - L2 LINE L2 0 3313 2821 222 150 183 0 chr3 21918500 21918560 -196118598 - L2 LINE L2 -770 2544 2474 396 257 91 91 chr3 21918641 21918937 -196118221 - HAL1 LINE L1 -2170 337 42 2209 119 0 0 chr3 21922237 21922532 -196114626 + AluSx SINE Alu 1 295 -17 6058 135 50 12 chr3 21923960 21924969 -196112189 - L1MA9 LINE L1 -1 6311 5265 1441 244 78 24 chr3 21925095 21925596 -196111562 - L1ME2 LINE L1 -34 6130 5603 1702 107 137 0 chr3 21925596 21925859 -196111299 + AluSq SINE Alu 3 301 -2 1230 138 0 10 chr3 21925885 21926080 -196111078 + AluSg/x SINE Alu 120 312 0 955 263 100 12 chr3 21926084 21926568 -196110590 - L1ME2 LINE L1 -547 5617 5078 592 237 15 0 chr3 21926585 21926720 -196110438 + L1 LINE L1 3745 3881 -2265 1561 283 29 7 chr3 21926748 21927310 -196109848 - L1ME2 LINE L1 -1098 5048 4475 * 7048 185 29 29 chr3 21927309 21927808 -196109350 + L1PA16 LINE L1 3564 4061 -2105 2728 40 0 0 chr3 21927808 21928109 -196109049 + AluY SINE Alu 1 301 -10 7048 185 29 29 chr3 21928109 21929911 -196107247 + L1PA16 LINE L1 4061 5854 -312 846 272 17 48 chr3 21930031 21930491 -196106667 + L1PA16 LINE L1 5719 6164 -2 201 74 0 0 chr3 21930504 21930531 -196106627 + (A)n Simple_repeat Simple_repeat 1 27 0 265 227 0 80 chr3 21930544 21930632 -196106526 - L1MEd LINE L1 -5943 176 96 21 36 0 0 chr3 21931226 21931254 -196105904 + AT_rich Low_complexity Low_complexity 1 28 0 54 49 0 0 chr3 21931544 21931626 -196105532 + AT_rich Low_complexity Low_complexity 1 82 0 492 254 151 80 chr3 21931635 21932018 -196105140 + L1M4 LINE L1 3625 3979 -2167 2424 78 0 0 chr3 21932018 21932313 -196104845 - AluY SINE Alu -16 295 1 492 254 151 80 chr3 21932313 21933187 -196103971 + L1M4 LINE L1 3979 4971 -1175 23 0 0 0 chr3 21933263 21933286 -196103872 + AT_rich Low_complexity Low_complexity 1 23 0 266 279 62 19 chr3 21933494 21933655 -196103503 - L1ME3A LINE L1 -243 5927 5760 579 163 70 47 chr3 21934587 21934716 -196102442 - FLAM_C SINE Alu 0 133 2 661 136 163 27 chr3 21934719 21934892 -196102266 - L1M3 LINE L1 -685 5495 5303 926 197 6 11 chr3 21934894 21935072 -196102086 - AluJb SINE Alu -5 307 131 277 91 0 0 chr3 21935074 21935118 -196102040 - L1M3 LINE L1 -845 5301 5258 1163 195 35 4 chr3 21935139 21935365 -196101793 - L1MC4 LINE L1 -1096 6946 6714 1399 245 26 9 chr3 21935377 21935720 -196101438 - L1MC4 LINE L1 -1927 5881 5533 732 284 71 18 chr3 21935827 21936304 -196100854 - L1ME3A LINE L1 -487 5675 5175 568 248 86 36 chr3 21936318 21936620 -196100538 - L1MC5 LINE L1 -36 7925 7609 1978 149 7 0 chr3 21936867 21937155 -196100003 + AluJo SINE Alu 2 291 -21 757 191 14 0 chr3 21937272 21937413 -196099745 + AluJb SINE Alu 164 306 -6 892 216 122 79 chr3 21938243 21938696 -196098462 + MLT1F1 LTR MaLR 40 520 -22 311 326 4 28 chr3 21938918 21939208 -196097950 + CT-rich Low_complexity Low_complexity 1 282 0 428 282 105 6 chr3 21939389 21939570 -196097588 - L1M4 LINE L1 -5591 951 753 419 262 19 0 chr3 21939580 21939687 -196097471 - L1M4 LINE L1 -5724 922 814 458 248 137 13 chr3 21939687 21939840 -196097318 + MLT1J2 LTR MaLR 157 328 -122 234 0 0 0 chr3 21940130 21940156 -196097002 + (A)n Simple_repeat Simple_repeat 1 26 0 308 315 72 9 chr3 21940349 21940460 -196096698 - L2 LINE L2 -5 3308 3191 29729 106 16 13 chr3 21940593 21945097 -196092061 + L1P LINE L1 598 5114 -1032 3523 142 48 3 chr3 21947091 21948125 -196089033 - L1PBa LINE L1 -3423 3439 2357 6999 33 0 2 chr3 21948149 21948968 -196088190 - L1PA4 LINE L1 0 6155 5339 * 9905 41 5 9 chr3 21948961 21950692 -196086466 + L1PA4 LINE L1 4205 5923 -232 221 282 90 0 chr3 21954318 21954396 -196082762 + MIR SINE MIR 135 219 -43 208 203 17 17 chr3 21955734 21955793 -196081365 + GA-rich Low_complexity Low_complexity 2 60 0 233 247 130 13 chr3 21960001 21960078 -196077080 - MER58C DNA MER1_type -57 158 73 244 338 90 41 chr3 21960223 21960489 -196076669 - L2 LINE L2 -9 3263 2985 892 214 132 14 chr3 21960809 21961098 -196076060 + MER33 DNA MER1_type 1 323 -1 588 208 79 55 chr3 21961440 21961642 -196075516 + MIR SINE MIR 8 214 -48 292 257 14 0 chr3 21962902 21962976 -196074182 + MIR SINE MIR 50 124 -138 1484 161 57 0 chr3 21962977 21963225 -196073933 + MER47A DNA MER2_type 1 262 -104 629 78 0 69 chr3 21963227 21963329 -196073829 + L1MB3 LINE L1 5836 5930 -253 518 150 10 50 chr3 21963339 21963439 -196073719 + MER47A DNA MER2_type 264 359 -7 950 275 44 39 chr3 21963578 21963938 -196073220 + L1 LINE L1 2418 2779 -3367 269 202 81 0 chr3 21963963 21964062 -196073096 - L1M3d LINE L1 -4790 1775 1669 1570 185 38 19 chr3 21964063 21964377 -196072781 - LTR10B LTR ERV1 0 547 249 16450 262 49 38 chr3 21964434 21969671 -196067487 - HERVI LTR ERV1 -17 7768 2279 184 333 122 0 chr3 21969671 21969761 -196067397 - MER5A DNA MER1_type -16 173 73 16450 262 49 38 chr3 21969761 21971407 -196065751 - HERVI LTR ERV1 -5506 2279 652 2359 226 73 11 chr3 21971437 21971982 -196065176 - HERVI LTR ERV1 -6066 583 5 1614 161 35 21 chr3 21971982 21972268 -196064890 - LTR10B LTR ERV1 0 547 258 767 263 68 40 chr3 21972347 21972846 -196064312 - L1M3d LINE L1 -5277 1265 753 470 269 17 0 chr3 21972856 21972975 -196064183 - L1M3d LINE L1 -5724 922 802 429 303 63 34 chr3 21973278 21973516 -196063642 - L1M3d LINE L1 -6293 249 5 1687 164 17 7 chr3 21973932 21974224 -196062934 + AluJb SINE Alu 1 295 -17 28 48 0 0 chr3 21975684 21975726 -196061432 + AT_rich Low_complexity Low_complexity 1 42 0 1498 163 65 4 chr3 21975869 21976145 -196061013 - AluJb SINE Alu -19 293 1 253 324 7 22 chr3 21977698 21977834 -196059324 - MLT1K LTR MaLR -23 565 432 330 176 98 78 chr3 21977949 21978051 -196059107 - MLT1K LTR MaLR -404 184 81 212 263 79 26 chr3 21978621 21978697 -196058461 + MIR SINE MIR 45 124 -138 757 229 89 51 chr3 21978707 21978894 -196058264 + MIR SINE MIR 13 212 -50 1923 149 7 0 chr3 21978894 21979196 -196057962 + AluSx SINE Alu 1 304 -8 757 229 89 51 chr3 21979196 21979244 -196057914 + MIR SINE MIR 212 257 -5 2257 85 0 10 chr3 21979269 21979576 -196057582 + AluSx SINE Alu 1 304 -8 231 188 62 0 chr3 21981114 21981194 -196055964 + (TTAA)n Simple_repeat Simple_repeat 4 88 0 7912 57 1 0 chr3 21981649 21982614 -196054544 + LTR5 LTR ERVK 1 966 -3 433 355 39 17 chr3 21982981 21983215 -196053943 - MIR SINE MIR -1 261 23 919 153 0 0 chr3 21983251 21983395 -196053763 + AluJb SINE Alu 157 300 -12 2834 219 95 7 chr3 21984704 21985440 -196051718 - L1M4 LINE L1 -1253 4893 4093 271 232 0 14 chr3 21985435 21985504 -196051654 - L1MEc LINE L1 -6307 89 22 * 1003 167 23 11 chr3 21985646 21985820 -196051338 - AluJo SINE Alu -134 178 3 479 230 62 62 chr3 21985823 21985957 -196051201 - L1M4 LINE L1 -1488 4658 4522 2415 97 49 6 chr3 21985957 21986306 -196050852 + THE1B LTR MaLR 1 364 0 479 230 62 62 chr3 21986306 21986349 -196050809 - L1M4 LINE L1 -1623 4523 4481 295 354 20 14 chr3 21986951 21987098 -196050060 - L2 LINE L2 -191 3081 2934 1545 189 29 0 chr3 21987151 21987463 -196049695 + MER33 DNA MER1_type 1 321 -3 1058 149 0 12 chr3 21987568 21987736 -196049422 + FRAM SINE Alu 1 166 0 2097 130 0 0 chr3 21987737 21988044 -196049114 + AluSx SINE Alu 1 307 -5 25 31 0 0 chr3 21988132 21988164 -196048994 + AT_rich Low_complexity Low_complexity 1 32 0 1576 174 0 37 chr3 21988660 21988981 -196048177 - AluJb SINE Alu -3 309 1 203 289 111 72 chr3 21989553 21989761 -196047397 - L2 LINE L2 -33 3239 3024 3336 198 25 14 chr3 21989862 21990502 -196046656 - MER82 DNA MER2_type -6 647 1 1852 151 20 0 chr3 21990845 21991149 -196046009 + AluSx SINE Alu 1 310 -2 240 86 0 0 chr3 21991925 21991960 -196045198 + (TG)n Simple_repeat Simple_repeat 2 36 0 1521 173 14 4 chr3 21992811 21993088 -196044070 - AluJo SINE Alu -32 280 1 381 262 49 8 chr3 21993102 21993224 -196043934 - MIR SINE MIR -5 257 131 3033 91 43 0 chr3 21993224 21993640 -196043518 + MER57B LTR ERV1 1 434 0 4073 141 47 5 chr3 21993640 21994285 -196042873 + MER57B-int LTR ERV1 1 672 -6865 * 6094 171 89 45 chr3 21994282 21996918 -196040240 + MER51-int LTR ERV1 288 4651 -2738 2410 77 0 6 chr3 21996918 21997229 -196039929 + AluSc SINE Alu 1 309 0 6094 171 89 45 chr3 21997229 21997761 -196039397 + MER51-int LTR ERV1 4651 5158 -2231 1459 46 5 36 chr3 21997764 21997958 -196039200 - L1PA4 LINE L1 0 6155 5968 2004 194 90 6 chr3 21998060 21999469 -196037689 - L1PBa LINE L1 -5185 1678 6 751 154 0 0 chr3 21999657 21999767 -196037391 + FRAM SINE Alu 49 158 -18 279 294 52 29 chr3 22000660 22000796 -196036362 + L3 LINE CR1 725 863 -714 346 327 130 57 chr3 22000883 22001305 -196035853 + L3 LINE CR1 1042 1494 -83 1256 219 59 76 chr3 22001327 22001546 -196035612 - L1MC4 LINE L1 0 8042 7821 2086 117 13 17 chr3 22001546 22001846 -196035312 + AluSx SINE Alu 1 299 -13 1256 219 59 76 chr3 22001846 22002115 -196035043 - L1MC4 LINE L1 -221 7821 7562 351 0 0 0 chr3 22002124 22002163 -196034995 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1118 181 0 50 chr3 22002166 22002387 -196034771 - AluJo SINE Alu -31 281 72 453 210 216 6 chr3 22002507 22002669 -196034489 - L1MC4a LINE L1 -490 7318 7123 729 172 0 0 chr3 22002945 22003437 -196033721 + (CAG)n Simple_repeat Simple_repeat 1 492 0 324 161 0 0 chr3 22003450 22003531 -196033627 + (CAG)n Simple_repeat Simple_repeat 2 82 0 411 337 12 0 chr3 22003741 22003913 -196033245 + (CCCCAG)n Simple_repeat Simple_repeat 6 179 0 312 283 157 25 chr3 22004205 22004403 -196032755 - L1ME LINE L1 -381 5789 5566 334 240 32 88 chr3 22004935 22005060 -196032098 - L1ME3A LINE L1 -24 6146 6029 192 306 0 0 chr3 22005452 22005501 -196031657 - L2 LINE L2 -77 3195 3147 502 240 25 0 chr3 22006066 22006187 -196030971 + MIR SINE MIR 8 131 -131 2911 101 43 10 chr3 22006195 22006609 -196030549 - MER57B LTR ERV1 -6 428 1 1005 106 38 1 chr3 22006609 22006837 -196030321 - MER57B-int LTR ERV1 0 7537 7274 630 187 24 8 chr3 22006837 22006960 -196030198 - LTR54B LTR ERV1 -369 129 5 11630 120 58 3 chr3 22006960 22008707 -196028451 - MER57-int LTR ERV1 -387 7150 5307 372 185 0 0 chr3 22008698 22008763 -196028395 - MER57-int LTR ERV1 -1879 4719 4655 * 34935 46 3 0 chr3 22008763 22012968 -196024190 + L1P LINE L1 1 4217 -1929 3493 162 52 12 chr3 22013875 22014073 -196023085 + L1MB3 LINE L1 5444 5633 -550 216 0 0 0 chr3 22014073 22014097 -196023061 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 3493 162 52 12 chr3 22014097 22014590 -196022568 + L1MB3 LINE L1 5633 6163 -20 217 141 77 0 chr3 22014591 22014700 -196022458 + (TA)n Simple_repeat Simple_repeat 1 117 0 201 239 26 53 chr3 22015162 22015275 -196021883 + T-rich Low_complexity Low_complexity 5 114 0 855 121 23 75 chr3 22015297 22015347 -196021811 - L1MB4 LINE L1 -1 6179 6128 2561 41 0 3 chr3 22015347 22015642 -196021516 - AluY SINE Alu -17 294 1 855 121 23 75 chr3 22015642 22015765 -196021393 - L1MB4 LINE L1 -52 6128 6015 205 367 28 0 chr3 22017628 22017737 -196019421 + MIR SINE MIR 136 247 -15 1084 162 66 5 chr3 22018727 22018925 -196018233 + L1MD3 LINE L1 7649 7858 -137 7222 205 51 16 chr3 22019210 22021877 -196015281 + L1MB5 LINE L1 3371 6131 -43 1604 103 0 30 chr3 22021983 22022217 -196014941 + AluSg/x SINE Alu 82 308 -2 195 365 0 0 chr3 22022830 22022893 -196014265 + MIR SINE MIR 171 233 -29 341 288 73 89 chr3 22023190 22023492 -196013666 + L2 LINE L2 2967 3263 -9 198 333 25 0 chr3 22023877 22023958 -196013200 + L2 LINE L2 2128 2210 -1104 411 224 19 28 chr3 22024004 22024111 -196013047 + L1MC5 LINE L1 7705 7810 -151 423 280 126 16 chr3 22025067 22025249 -196011909 - MIR SINE MIR -14 248 47 204 214 0 0 chr3 22025658 22025700 -196011458 + L2 LINE L2 3019 3060 -212 193 245 19 0 chr3 22026049 22026102 -196011056 + MIR SINE MIR 59 112 -150 230 257 14 14 chr3 22026671 22026741 -196010417 - MIR SINE MIR -19 243 174 488 234 35 35 chr3 22027125 22027266 -196009892 + L1MC4 LINE L1 6726 6866 -1176 689 242 130 71 chr3 22027393 22027928 -196009230 + L1MC4 LINE L1 7347 8042 0 349 237 13 112 chr3 22028103 22028255 -196008903 - MIR3 SINE MIR -69 139 3 1773 117 86 0 chr3 22029621 22029878 -196007280 + AluSx SINE Alu 1 279 -33 232 67 0 44 chr3 22029881 22029926 -196007232 + (CGGGA)n Simple_repeat Simple_repeat 3 45 0 191 301 34 55 chr3 22030473 22030619 -196006539 - L2 LINE L2 -306 2966 2824 383 246 66 25 chr3 22030649 22030771 -196006387 + MIR SINE MIR 16 142 -66 23 78 0 0 chr3 22031796 22031847 -196005311 + AT_rich Low_complexity Low_complexity 1 51 0 25 0 0 0 chr3 22032008 22032033 -196005125 + AT_rich Low_complexity Low_complexity 1 25 0 258 304 0 0 chr3 22032674 22032753 -196004405 + L1ME4a LINE L1 5735 5813 -308 373 240 10 20 chr3 22032827 22032927 -196004231 + L1ME4a LINE L1 5959 6057 -64 513 227 93 138 chr3 22033089 22033661 -196003497 + L2 LINE L2 2737 3313 0 191 308 181 8 chr3 22034096 22034229 -196002929 - MIR SINE MIR -54 208 53 180 233 0 0 chr3 22034603 22034646 -196002512 + L2 LINE L2 3271 3313 0 1995 111 59 0 chr3 22034878 22035167 -196001991 + AluSx SINE Alu 1 306 -6 1077 188 8 2 chr3 22035178 22035443 -196001715 - MER2 DNA MER2_type 0 345 32 1115 317 149 5 chr3 22035454 22036174 -196000984 - L2 LINE L2 -228 3044 2225 327 215 94 68 chr3 22037273 22037464 -195999694 - L2 LINE L2 0 3313 3118 501 232 205 24 chr3 22037563 22037817 -195999341 + L2 LINE L2 3014 3313 0 186 250 184 13 chr3 22037947 22038023 -195999135 + L2 LINE L2 3116 3204 -68 2302 110 7 0 chr3 22038339 22038647 -195998511 - AluSx SINE Alu -2 310 1 401 285 106 24 chr3 22038666 22038873 -195998285 - MIR SINE MIR -16 246 23 1145 120 0 63 chr3 22038887 22039078 -195998080 - AluJb SINE Alu 0 312 134 788 160 53 0 chr3 22039385 22039554 -195997604 - MIR SINE MIR -5 257 80 848 129 0 38 chr3 22040132 22040264 -195996894 + FLAM_C SINE Alu 1 127 -16 754 259 89 17 chr3 22040719 22040955 -195996203 - MIR SINE MIR 0 262 10 362 304 74 28 chr3 22042201 22042418 -195994740 + MIR SINE MIR 2 228 -34 2474 175 103 34 chr3 22042436 22042530 -195994628 - Charlie1 DNA MER1_type -70 2691 2605 2781 0 0 10 chr3 22042530 22042828 -195994330 + AluYa5 SINE Alu 1 295 -16 2169 129 0 3 chr3 22042831 22043126 -195994032 + AluSq SINE Alu 1 294 -19 2052 124 0 3 chr3 22043126 22043439 -195993719 + AluSx SINE Alu 1 312 0 2474 175 103 34 chr3 22043439 22043977 -195993181 - Charlie1 DNA MER1_type -156 2605 2009 1769 116 101 0 chr3 22043977 22044244 -195992914 - AluSg SINE Alu -16 294 1 632 276 36 14 chr3 22044299 22044520 -195992638 + MIR SINE MIR 9 234 -28 26 64 0 0 chr3 22044645 22044692 -195992466 + AT_rich Low_complexity Low_complexity 1 47 0 427 205 94 82 chr3 22044809 22044980 -195992178 + MER104 DNA Tc2 8 180 0 754 207 72 16 chr3 22046152 22046345 -195990813 + MER3 DNA MER1_type 2 205 -4 438 268 33 13 chr3 22046709 22046876 -195990282 - L1MC4a LINE L1 -1969 5839 5670 6701 70 17 17 chr3 22046866 22047783 -195989375 - L1PA7 LINE L1 -1 6153 5231 1043 233 107 13 chr3 22048113 22048413 -195988745 - MLT1J2 LTR MaLR -122 328 1 21 0 0 0 chr3 22048473 22048494 -195988664 + AT_rich Low_complexity Low_complexity 1 21 0 2310 75 3 16 chr3 22048970 22049276 -195987882 - AluY SINE Alu -9 302 1 323 132 26 68 chr3 22049673 22049767 -195987391 - MER53 DNA DNA -73 116 1 467 249 46 69 chr3 22050506 22050667 -195986491 - MLT1J2 LTR MaLR -40 471 252 608 271 48 5 chr3 22050692 22050880 -195986278 - MLT1J1 LTR MaLR -250 196 1 212 313 0 16 chr3 22051507 22051571 -195985587 - L2 LINE L2 -5 3267 3205 2176 107 7 0 chr3 22051597 22051895 -195985263 + AluSx SINE Alu 1 300 -12 732 179 0 0 chr3 22053874 22053986 -195983172 + FLAM_A SINE Alu 4 115 -18 701 286 112 9 chr3 22054248 22054472 -195982686 - MLT1K LTR MaLR -318 270 24 203 308 62 0 chr3 22054859 22054924 -195982234 + L2 LINE L2 3241 3309 -4 292 336 70 33 chr3 22055837 22056108 -195981050 - L2 LINE L2 -171 3142 2862 243 324 57 29 chr3 22056141 22056246 -195980912 - MIR3 SINE MIR -54 154 47 241 280 72 40 chr3 22056491 22056616 -195980542 + MIR SINE MIR 24 152 -56 440 297 82 18 chr3 22057148 22057367 -195979791 + MIR SINE MIR 20 252 -10 1967 81 0 75 chr3 22058445 22058658 -195978500 - AluSq SINE Alu 0 326 144 2230 78 0 41 chr3 22058658 22058978 -195978180 - AluSg SINE Alu -2 308 2 1967 81 0 75 chr3 22058978 22059112 -195978046 - AluSq SINE Alu -182 144 2 580 111 40 10 chr3 22059494 22059593 -195977565 - L1MB2 LINE L1 -2 6169 6068 632 283 148 0 chr3 22059895 22060125 -195977033 + L2 LINE L2 2712 2975 -339 306 326 32 0 chr3 22060120 22060215 -195976943 + MER5B DNA MER1_type 7 104 -74 * 689 231 17 52 chr3 22060364 22060537 -195976621 - AluJo SINE Alu -144 168 2 2201 101 3 0 chr3 22060547 22060843 -195976315 - AluSx SINE Alu -15 297 1 1207 41 0 0 chr3 22061269 22061414 -195975744 - L1PA4 LINE L1 -1 6154 6010 445 83 67 0 chr3 22061480 22061557 -195975601 + L1M4 LINE L1 5252 5337 -822 1771 155 7 0 chr3 22061557 22061841 -195975317 + AluSx SINE Alu 1 286 -26 894 122 157 35 chr3 22111892 22112064 -195925094 - PRIMA41-int LTR ERV1 -6201 1555 1363 * 1942 88 42 67 chr3 22112056 22112386 -195924772 - PRIMA41-int LTR ERV1 -6826 930 609 857 145 23 0 chr3 22112386 22112517 -195924641 + AluSq/x SINE Alu 2 135 -178 2087 147 0 3 chr3 22112518 22112831 -195924327 + AluSx SINE Alu 1 312 0 874 128 13 0 chr3 22112843 22112999 -195924159 + L1MCa LINE L1 1204 1361 -5065 15758 82 11 2 chr3 22113131 22115529 -195921629 - L1P4 LINE L1 -509 6381 3956 3858 168 40 4 chr3 22115677 22116417 -195920741 - L1P4 LINE L1 -4302 2561 1795 1991 117 37 27 chr3 22116417 22116715 -195920443 + AluSp SINE Alu 1 301 -12 2128 108 3 3 chr3 22116721 22117028 -195920130 + L1P3 LINE L1 5 311 -6150 1882 97 4 8 chr3 22117157 22117425 -195919733 - L1P LINE L1 -4328 1818 1552 6485 77 24 17 chr3 22117426 22118403 -195918755 - L1PA4 LINE L1 -2 6153 5175 7799 123 35 25 chr3 22118506 22119841 -195917317 - L1PBa LINE L1 -4121 2742 1395 1702 241 120 40 chr3 22119838 22120440 -195916718 - L1PBa LINE L1 -5806 1057 408 * 5832 105 46 5 chr3 22120571 22121479 -195915679 + L1MA2 LINE L1 5204 6148 -156 2215 117 7 0 chr3 22121479 22121779 -195915379 + AluSq SINE Alu 1 302 -11 2015 119 39 3 chr3 22121779 22122063 -195915095 + AluSx SINE Alu 1 295 -17 358 331 15 45 chr3 22122064 22122310 -195914848 - MIR3 SINE MIR -22 240 2 326 104 10 188 chr3 22122730 22122826 -195914332 + L1PB3 LINE L1 6074 6152 -2 332 318 53 8 chr3 22122855 22122987 -195914171 - MER91C DNA MER1_type 0 140 3 374 296 118 13 chr3 22123015 22123167 -195913991 + MIR3 SINE MIR 33 200 -8 500 351 25 4 chr3 22123173 22123415 -195913743 + L3 LINE CR1 1244 1490 -87 26 0 0 0 chr3 22124236 22124262 -195912896 + AT_rich Low_complexity Low_complexity 1 26 0 796 204 69 33 chr3 22124622 22124897 -195912261 - L1M4 LINE L1 -2911 3951 3667 5365 128 15 7 chr3 22124898 22126362 -195910796 - L1PA16 LINE L1 -4 6162 4651 1408 173 37 9 chr3 22126362 22126681 -195910477 + MSTA LTR MaLR 1 426 -2 3138 193 45 19 chr3 22126683 22127378 -195909780 - L1 LINE L1 -1491 4655 3943 5903 130 19 1 chr3 22127378 22128268 -195908890 - HSMAR2 DNA Mariner -396 906 1 279 200 24 12 chr3 22128633 22128718 -195908440 + (TATG)n Simple_repeat Simple_repeat 3 88 0 1887 192 31 17 chr3 22128718 22129078 -195908080 - MLT1A1 LTR MaLR 0 365 1 25 31 0 0 chr3 22129165 22129197 -195907961 + AT_rich Low_complexity Low_complexity 1 32 0 11746 179 23 21 chr3 22129483 22130587 -195906571 - L1PB1 LINE L1 -2 6149 5049 2264 118 0 0 chr3 22130587 22130883 -195906275 - AluSx SINE Alu -16 296 1 11746 179 23 21 chr3 22130883 22133289 -195903869 - L1PB1 LINE L1 -1102 5049 2632 14596 144 118 11 chr3 22133420 22136708 -195900450 - L1PBa LINE L1 -3219 3643 3 324 326 79 18 chr3 22137160 22137387 -195899771 + MIR SINE MIR 14 254 -8 1618 191 36 28 chr3 22138136 22138524 -195898634 - pTR5 LTR ERV1 -1309 1129 739 1474 183 154 34 chr3 22138674 22139162 -195897996 + LTR61 LTR ERV1 16 595 0 623 182 4 37 chr3 22139227 22139371 -195897787 + L1M2 LINE L1 2804 2944 -3906 831 177 27 14 chr3 22139371 22139552 -195897606 - FRAM SINE Alu 0 180 1 604 200 164 0 chr3 22139552 22139717 -195897441 + L1M2 LINE L1 2938 3129 -3719 8115 192 50 15 chr3 22139860 22142125 -195895033 + L1PA12 LINE L1 1543 3897 -3687 687 111 0 10 chr3 22142125 22142224 -195894934 + MER4A LTR ERV1 1 98 -566 1908 109 8 77 chr3 22142224 22142597 -195894561 + MER4A LTR ERV1 261 664 0 2078 113 61 72 chr3 22142600 22143103 -195894055 + MER4A-int LTR ERV1 1 563 -6035 1235 234 76 12 chr3 22143298 22143640 -195893518 + LTR49-int LTR ERV1 1861 2224 -4107 3902 119 35 12 chr3 22143654 22144548 -195892610 + LTR49-int LTR ERV1 199 1168 -5590 4087 80 67 7 chr3 22144564 22145255 -195891903 + LTR49-int LTR ERV1 1764 2495 -4103 1060 181 95 0 chr3 22145255 22145487 -195891671 - LTR8 LTR ERV1 -434 257 4 2810 158 19 45 chr3 22145488 22146153 -195891005 + pTR5 LTR ERV1 743 1390 -1048 5301 235 7 36 chr3 22146153 22148003 -195889155 - Harlequin LTR ERV1 -1266 6004 4062 4554 81 32 0 chr3 22147981 22148698 -195888460 - Harlequin LTR ERV1 -4324 2572 1833 * 358 193 169 0 chr3 22148712 22148795 -195888363 + LTR8 LTR ERV1 156 252 -439 327 130 0 0 chr3 22148798 22148852 -195888306 - Harlequin LTR ERV1 -5176 1720 1667 331 97 21 86 chr3 22148852 22148945 -195888213 - L1PA8 LINE L1 0 6172 6086 4263 153 44 10 chr3 22149156 22150311 -195886847 - L1PB3 LINE L1 -135 6019 4834 7510 32 0 0 chr3 22150312 22151322 -195885836 - L1PA5 LINE L1 -3 6151 5138 7223 25 0 0 chr3 22151322 22152217 -195884941 + L1PA5 LINE L1 4267 5161 -985 1092 66 13 0 chr3 22152217 22152368 -195884790 - LTR10A-int LTR ERV1 -2850 2736 2584 * 7122 197 22 17 chr3 22152364 22155047 -195882111 - LTR10A-int LTR ERV1 -3034 4112 1399 730 196 31 32 chr3 22155053 22155306 -195881852 - LTR10A-int LTR ERV1 -5842 807 506 * 1443 200 32 6 chr3 22155299 22155614 -195881544 - LTR10A-int LTR ERV1 -6324 325 3 2959 114 41 63 chr3 22155627 22156186 -195880972 - LTR10A LTR ERV1 -62 547 1 5816 157 56 9 chr3 22156186 22157722 -195879436 - L1PBb LINE L1 -3424 2779 1096 2473 67 7 0 chr3 22157722 22158019 -195879139 + AluY SINE Alu 1 299 -12 5816 157 56 9 chr3 22158019 22158759 -195878399 - L1PBb LINE L1 -5107 1096 393 927 204 39 27 chr3 22159920 22160180 -195876978 - L1MB7 LINE L1 -20 6164 5902 25 75 0 0 chr3 22160184 22160237 -195876921 + AT_rich Low_complexity Low_complexity 1 53 0 255 252 104 50 chr3 22160245 22160304 -195876854 - L1ME4a LINE L1 -158 5963 5905 1508 238 78 9 chr3 22160304 22160830 -195876328 - L1MB7 LINE L1 -290 5894 5333 951 106 0 0 chr3 22160838 22160970 -195876188 - L1PA15 LINE L1 -5 6160 6029 245 32 0 0 chr3 22160982 22161038 -195876120 - AluY SINE Alu 0 304 249 1368 77 22 11 chr3 22161038 22161219 -195875939 - AluY SINE Alu -128 183 1 1238 121 24 5 chr3 22161219 22161425 -195875733 - L1PA15 LINE L1 -126 6039 5830 664 170 18 53 chr3 22161435 22161474 -195875684 - L1MB7 LINE L1 -830 5316 5277 2349 60 0 0 chr3 22161474 22161781 -195875377 - AluY SINE Alu 0 307 1 664 170 18 53 chr3 22161781 22161910 -195875248 - L1MB7 LINE L1 -869 5277 5152 5405 212 43 55 chr3 22162129 22163087 -195874071 - L1MB7 LINE L1 -982 5164 4196 1081 167 18 0 chr3 22163087 22163255 -195873903 - FAM SINE Alu -4 171 1 5405 212 43 55 chr3 22163255 22163541 -195873617 - L1MB7 LINE L1 -1950 4196 3908 1946 109 32 7 chr3 22163541 22163824 -195873334 - AluSg SINE Alu -18 292 3 2165 124 0 0 chr3 22163826 22164116 -195873042 - AluSq SINE Alu -23 290 1 5405 212 43 55 chr3 22164116 22164561 -195872597 - L1MB7 LINE L1 -2239 3907 3496 495 0 0 0 chr3 22164561 22164616 -195872542 + (TG)n Simple_repeat Simple_repeat 2 56 0 5405 212 43 55 chr3 22164616 22164916 -195872242 - L1MB7 LINE L1 -2650 3496 3194 26 0 0 0 chr3 22165139 22165165 -195871993 + AT_rich Low_complexity Low_complexity 1 26 0 216 0 0 0 chr3 22165165 22165189 -195871969 + (G)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr3 22165270 22165292 -195871866 + GC_rich Low_complexity Low_complexity 1 22 0 187 167 0 0 chr3 22165322 22165352 -195871806 + C-rich Low_complexity Low_complexity 1 30 0 35 0 0 0 chr3 22165403 22165438 -195871720 + GC_rich Low_complexity Low_complexity 1 35 0 30 59 0 0 chr3 22165478 22165512 -195871646 + AT_rich Low_complexity Low_complexity 1 34 0 242 279 0 16 chr3 22165693 22165754 -195871404 + MIR SINE MIR 19 78 -130 191 242 45 61 chr3 22166113 22166179 -195870979 + L3 LINE CR1 1494 1558 -19 465 133 0 0 chr3 22166191 22166274 -195870884 + L1MB7 LINE L1 6089 6171 -13 12950 167 25 10 chr3 22166673 22170329 -195866829 - L1PA14 LINE L1 -1 6160 2458 781 145 14 14 chr3 22170329 22170467 -195866691 - MER4B LTR ERV1 -18 592 455 12254 110 55 11 chr3 22170624 22172738 -195864420 - MER4-int LTR ERV1 -555 6043 3837 3737 135 95 24 chr3 22172739 22173627 -195863531 - MER4-int LTR ERV1 -2919 3679 2729 5460 108 105 126 chr3 22173628 22175033 -195862125 - pTR5 LTR ERV1 0 2438 1063 3128 123 31 68 chr3 22175225 22175480 -195861678 + MER41C LTR ERV1 1 264 -290 2289 65 0 0 chr3 22175480 22175756 -195861402 + AluY SINE Alu 17 292 -19 3128 123 31 68 chr3 22175756 22176075 -195861083 + MER41C LTR ERV1 264 554 0 2398 74 38 69 chr3 22176095 22176183 -195860975 + PRIMA41-int LTR ERV1 525 614 -7142 1986 132 27 0 chr3 22176183 22176478 -195860680 - AluSq SINE Alu -9 304 2 2398 74 38 69 chr3 22176478 22176808 -195860350 + PRIMA41-int LTR ERV1 614 930 -6826 * 27132 120 22 12 chr3 22176800 22181111 -195856047 + PRIMA41-int LTR ERV1 1363 5720 -2036 2666 241 78 9 chr3 22181111 22182037 -195855121 + L1PB1 LINE L1 22 1011 -5852 13945 192 17 13 chr3 22182069 22187214 -195849944 + L1PB1 LINE L1 1297 6507 -360 279 190 0 0 chr3 22187219 22187277 -195849881 + (TA)n Simple_repeat Simple_repeat 1 58 0 269 226 28 66 chr3 22187327 22187508 -195849650 + (TTATA)n Simple_repeat Simple_repeat 1 174 0 2248 118 22 11 chr3 22187518 22187882 -195849276 + L1PB1 LINE L1 6498 6865 -2 12326 116 23 31 chr3 22187885 22189479 -195847679 + MER41C-int LTR ERV1 5709 7285 -471 2484 70 0 0 chr3 22189479 22189779 -195847379 + AluY SINE Alu 1 300 -11 12326 116 23 31 chr3 22189779 22190248 -195846910 + MER41C-int LTR ERV1 7285 7756 0 2150 122 58 0 chr3 22190248 22190576 -195846582 + MER41C LTR ERV1 1 347 -207 222 154 46 15 chr3 22190567 22190632 -195846526 + (TA)n Simple_repeat Simple_repeat 2 68 0 * 279 0 0 0 chr3 22190644 22190675 -195846483 + (CA)n Simple_repeat Simple_repeat 2 32 0 1248 134 20 10 chr3 22190675 22190876 -195846282 + MER41C LTR ERV1 352 554 0 2183 109 0 0 chr3 22190889 22191173 -195845985 - AluSx SINE Alu -17 295 12 2190 121 0 10 chr3 22191307 22191612 -195845546 + AluSg SINE Alu 1 302 -8 2071 97 0 0 chr3 22191734 22191993 -195845165 + AluSx SINE Alu 37 295 -17 318 314 47 24 chr3 22192072 22192221 -195844937 - MIR SINE MIR -67 141 19 2313 108 0 0 chr3 22192791 22193087 -195844071 - AluSq SINE Alu -17 296 1 219 69 0 0 chr3 22193811 22193840 -195843318 + (TCC)n Simple_repeat Simple_repeat 1 29 0 241 26 53 0 chr3 22193892 22193930 -195843228 + (TCC)n Simple_repeat Simple_repeat 3 42 0 219 69 0 0 chr3 22193979 22194008 -195843150 + (TCC)n Simple_repeat Simple_repeat 1 29 0 254 29 29 0 chr3 22194058 22194093 -195843065 + (TCC)n Simple_repeat Simple_repeat 3 38 0 225 65 0 0 chr3 22194143 22194174 -195842984 + (TCC)n Simple_repeat Simple_repeat 1 31 0 189 0 0 0 chr3 22196861 22196882 -195840276 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 202 156 328 0 chr3 22197242 22197306 -195839852 + MER5A DNA MER1_type 71 155 -34 269 97 16 81 chr3 22197330 22197392 -195839766 - L2 LINE L2 -253 3060 3003 183 238 7 35 chr3 22197959 22198102 -195839056 + (TGG)n Simple_repeat Simple_repeat 1 139 0 306 337 6 0 chr3 22198300 22198463 -195838695 + (TGG)n Simple_repeat Simple_repeat 2 165 0 334 248 40 10 chr3 22199141 22199242 -195837916 - MIR SINE MIR -66 196 93 5270 69 19 1 chr3 22200475 22201160 -195835998 - L1PA7 LINE L1 -1 6153 5457 503 272 27 16 chr3 22201336 22201520 -195835638 - L1M4 LINE L1 -2549 3597 3412 648 163 0 102 chr3 22203451 22203598 -195833560 - AluJb SINE Alu -16 296 165 212 307 61 35 chr3 22203640 22203754 -195833404 + MIR SINE MIR 23 139 -123 2606 117 3 8 chr3 22203786 22204163 -195832995 - THE1C LTR MaLR 0 375 1 10772 114 9 27 chr3 22204163 22205773 -195831385 - THE1C-int LTR MaLR 0 1580 1 2635 101 5 11 chr3 22205773 22206150 -195831008 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr3 22206233 22206256 -195830902 + AT_rich Low_complexity Low_complexity 1 23 0 2286 123 0 0 chr3 22206887 22207196 -195829962 - AluSx SINE Alu -1 311 3 276 259 49 34 chr3 22207199 22207404 -195829754 - L1M4 LINE L1 -842 5304 5097 1612 118 36 3 chr3 22207407 22207711 -195829447 + MER1A DNA MER1_type 1 363 -109 2229 161 39 31 chr3 22207711 22208255 -195828903 - MLT2A2 LTR ERVL 0 554 1 800 105 21 49 chr3 22208259 22208402 -195828756 + MER1A DNA MER1_type 395 533 0 1673 282 34 2 chr3 22208405 22208991 -195828167 - L1M4 LINE L1 -1052 5094 4490 8023 198 15 12 chr3 22209005 22210716 -195826442 + L1 LINE L1 3564 5279 -867 22 0 0 0 chr3 22210716 22210738 -195826420 + AT_rich Low_complexity Low_complexity 1 22 0 21192 41 1 1 chr3 22210739 22214083 -195823075 - L1PA4 LINE L1 -4 6151 2809 8856 189 21 40 chr3 22214083 22214115 -195823043 - L1 LINE L1 -1328 4818 4787 2144 139 3 0 chr3 22214115 22214424 -195822734 - AluSp SINE Alu -3 310 1 8856 189 21 40 chr3 22214424 22216517 -195820641 - L1 LINE L1 -1359 4787 2732 3177 122 63 17 chr3 22216532 22217055 -195820103 - LTR10A LTR ERV1 -62 547 1 6649 224 21 25 chr3 22217057 22218562 -195818596 - LTR10A-int LTR ERV1 -1 6648 5150 31 58 0 0 chr3 22218679 22218731 -195818427 + GC_rich Low_complexity Low_complexity 1 52 0 22 70 0 0 chr3 22218823 22218866 -195818292 + GC_rich Low_complexity Low_complexity 1 43 0 2862 132 13 13 chr3 22219007 22219633 -195817525 + L1PA16 LINE L1 5436 6162 -4 3468 198 43 28 chr3 22219778 22220512 -195816646 - L1MB8 LINE L1 -81 6097 5331 2038 179 20 3 chr3 22220512 22220864 -195816294 + MLT1A1 LTR MaLR 4 361 -4 3468 198 43 28 chr3 22220864 22221325 -195815833 - L1MB8 LINE L1 -847 5331 4878 14150 189 27 22 chr3 22221458 22222077 -195815081 - L1PB2 LINE L1 0 6867 6252 2434 93 0 0 chr3 22222077 22222379 -195814779 + AluSc SINE Alu 1 302 -7 14150 189 27 22 chr3 22222379 22224600 -195812558 - L1PB2 LINE L1 -615 6252 4042 2330 118 0 6 chr3 22224600 22224914 -195812244 - AluSx SINE Alu 0 312 1 14150 189 27 22 chr3 22224914 22227456 -195809702 - L1PB2 LINE L1 -2825 4042 1395 3702 177 66 123 chr3 22227453 22228570 -195808588 - L1PB2 LINE L1 -5806 1057 4 * 2071 192 34 38 chr3 22228564 22228818 -195808340 - L1MB8 LINE L1 -2344 3802 3549 * 1456 30 0 0 chr3 22228818 22228984 -195808174 + AluY SINE Alu 146 311 0 2071 192 34 38 chr3 22228984 22229260 -195807898 - L1MB8 LINE L1 -2597 3549 3274 747 146 30 73 chr3 22229245 22229409 -195807749 + L1MA3 LINE L1 6148 6304 -1 * 7437 153 10 3 chr3 22229567 22231575 -195805583 - L1PA11 LINE L1 -11 6163 4123 4674 255 41 43 chr3 22231598 22233237 -195803921 - L1PA12 LINE L1 -4861 2723 2 589 221 43 0 chr3 22233493 22233633 -195803525 + MER104 DNA Tc2 35 180 0 1745 218 58 25 chr3 22234488 22234937 -195802221 + MLT1C LTR MaLR 1 464 -3 2743 262 59 23 chr3 22235893 22236654 -195800504 + L1M4 LINE L1 2 801 -5741 351 0 0 0 chr3 22236654 22236693 -195800465 + (CA)n Simple_repeat Simple_repeat 2 40 0 2743 262 59 23 chr3 22236693 22236831 -195800327 + L1M4 LINE L1 801 933 -5609 940 312 89 46 chr3 22236907 22237447 -195799711 + L2 LINE L2 1783 2367 -947 239 0 32 0 chr3 22237447 22237478 -195799680 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 940 312 89 46 chr3 22237478 22237699 -195799459 + L2 LINE L2 2367 2577 -737 438 241 132 17 chr3 22237737 22237911 -195799247 + MLT1J2 LTR MaLR 1 194 -256 472 176 98 59 chr3 22237947 22238100 -195799058 + MLT1J2 LTR MaLR 290 448 -2 588 300 47 6 chr3 22238981 22239151 -195798007 + MER91A DNA MER1_type 20 196 0 316 218 65 6 chr3 22239176 22239287 -195797871 - MIR SINE MIR -46 216 100 338 169 157 12 chr3 22240517 22240600 -195796558 + L2 LINE L2 3183 3277 -36 209 300 57 0 chr3 22240692 22240762 -195796396 - MIR SINE MIR -83 179 106 292 246 29 10 chr3 22241361 22241572 -195795586 + (CCGCT)n Simple_repeat Simple_repeat 1 215 0 236 265 60 17 chr3 22242473 22242590 -195794568 - LTR67 LTR ERVL -5 552 431 333 260 52 0 chr3 22242762 22242839 -195794319 - L2 LINE L2 -249 3023 2943 296 219 16 0 chr3 22242839 22242903 -195794255 - MLT1E1 LTR MaLR -589 65 1 337 249 72 55 chr3 22242999 22243180 -195793978 - HAL1b LINE L1 -1 1347 1164 250 284 12 0 chr3 22243180 22243261 -195793897 + GA-rich Low_complexity Low_complexity 1 82 0 630 272 64 79 chr3 22243262 22243598 -195793560 - HAL1b LINE L1 -195 1153 813 2067 113 7 24 chr3 22243598 22243920 -195793238 - AluSx SINE Alu 0 318 2 630 272 64 79 chr3 22243920 22244073 -195793085 - HAL1b LINE L1 -535 813 668 2183 123 3 3 chr3 22244073 22244375 -195792783 - AluSx SINE Alu -6 306 5 630 272 64 79 chr3 22244375 22244412 -195792746 - HAL1b LINE L1 -680 668 632 250 189 84 84 chr3 22244858 22244953 -195792205 - MLT1J LTR MaLR -51 460 366 346 228 25 0 chr3 22245039 22245118 -195792040 - MLT1J LTR MaLR -332 179 99 581 291 57 22 chr3 22245313 22245540 -195791618 - MIR SINE MIR -25 237 3 294 308 164 0 chr3 22245540 22245644 -195791514 - MER5B DNA MER1_type -1 177 57 * 397 296 34 29 chr3 22245624 22245804 -195791354 - MIR SINE MIR -38 224 45 207 206 69 138 chr3 22246882 22247042 -195790116 - MER5A DNA MER1_type -6 183 35 477 0 0 0 chr3 22247058 22247111 -195790047 + (CA)n Simple_repeat Simple_repeat 2 54 0 182 313 37 92 chr3 22247912 22248075 -195789083 - L3 LINE CR1 -429 1148 995 263 245 129 29 chr3 22248075 22248214 -195788944 + L3 LINE CR1 1351 1503 -74 204 330 78 29 chr3 22248224 22248327 -195788831 - MER5B DNA MER1_type -70 108 1 615 280 78 14 chr3 22248409 22248627 -195788531 - MIR SINE MIR -3 259 28 253 259 42 91 chr3 22248581 22248724 -195788434 + MIR3 SINE MIR 8 143 -65 * 256 300 39 62 chr3 22249060 22249190 -195787968 + MIR SINE MIR 20 146 -62 512 334 80 40 chr3 22249223 22249573 -195787585 - L2 LINE L2 0 3313 2950 194 138 0 0 chr3 22249593 22249622 -195787536 + L2 LINE L2 3225 3253 -19 2480 57 10 7 chr3 22250493 22250792 -195786366 + AluY SINE Alu 2 301 -10 791 214 44 6 chr3 22251048 22251230 -195785928 - MIR SINE MIR -22 240 52 321 333 0 28 chr3 22251639 22251747 -195785411 - MIR SINE MIR -138 124 20 220 300 88 0 chr3 22251777 22251857 -195785301 - L2 LINE L2 -44 3269 3183 351 234 11 43 chr3 22251973 22252067 -195785091 + L2 LINE L2 3223 3313 0 302 300 40 20 chr3 22252103 22252203 -195784955 - L2 LINE L2 -216 3056 2955 419 78 16 0 chr3 22252271 22252335 -195784823 + (CA)n Simple_repeat Simple_repeat 2 66 0 225 225 155 0 chr3 22252345 22252416 -195784742 + MER112 DNA MER1_type 125 206 -54 185 301 198 58 chr3 22252536 22253178 -195783980 + L2 LINE L2 2004 2735 -579 278 314 33 25 chr3 22253308 22253429 -195783729 + L2 LINE L2 2985 3106 -166 614 221 33 107 chr3 22253528 22253772 -195783386 + MIR SINE MIR 16 241 -21 192 77 0 0 chr3 22253884 22253910 -195783248 + (TCC)n Simple_repeat Simple_repeat 2 27 0 561 282 146 56 chr3 22254160 22254403 -195782755 + L2 LINE L2 2340 2560 -753 1594 261 97 20 chr3 22254403 22254950 -195782208 - MLT1G LTR MaLR 0 590 2 561 282 146 56 chr3 22254950 22255573 -195781585 + L2 LINE L2 2560 3299 -14 234 0 0 0 chr3 22255588 22255614 -195781544 + (TG)n Simple_repeat Simple_repeat 2 27 0 348 250 12 0 chr3 22255696 22255776 -195781382 + MIR SINE MIR 65 145 -63 251 200 9 67 chr3 22256747 22256852 -195780306 + G-rich Low_complexity Low_complexity 6 104 0 24 0 0 0 chr3 22257063 22257087 -195780071 + GC_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr3 22257096 22257120 -195780038 + GC_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr3 22258548 22258572 -195778586 + GC_rich Low_complexity Low_complexity 1 24 0 40 21 0 0 chr3 22258727 22258774 -195778384 + GC_rich Low_complexity Low_complexity 1 47 0 202 229 38 95 chr3 22258909 22259014 -195778144 + MIR3 SINE MIR 86 184 -24 853 226 19 28 chr3 22259155 22259367 -195777791 - MIR SINE MIR -7 255 46 407 322 28 17 chr3 22259612 22259789 -195777369 + MIR SINE MIR 59 237 -25 312 293 68 94 chr3 22259909 22260261 -195776897 - L2 LINE L2 -74 3239 2897 846 276 162 48 chr3 22260432 22261088 -195776070 + L2 LINE L2 2566 3311 -2 21 71 0 0 chr3 22262657 22262699 -195774459 + AT_rich Low_complexity Low_complexity 1 42 0 2207 121 3 3 chr3 22264385 22264691 -195772467 - AluSq SINE Alu -7 306 1 977 172 11 1 chr3 22264973 22265194 -195771964 - L1MCa LINE L1 -4979 1628 1204 2137 147 0 3 chr3 22265206 22265519 -195771639 - AluSx SINE Alu 0 312 1 873 152 23 0 chr3 22265520 22265652 -195771506 - AluJo SINE Alu -177 135 1 358 236 55 0 chr3 22265654 22265764 -195771394 - L1MCa LINE L1 -5248 1178 1063 10875 152 29 12 chr3 22265776 22265926 -195771232 - L1MA2 LINE L1 0 6304 6158 2010 116 41 10 chr3 22265926 22265946 -195771212 - AluSp SINE Alu -12 301 283 225 0 0 0 chr3 22265946 22265971 -195771187 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2010 116 41 10 chr3 22265971 22266242 -195770916 - AluSp SINE Alu -30 283 1 2257 117 7 0 chr3 22266242 22266541 -195770617 - AluSq SINE Alu -11 302 1 10875 152 29 12 chr3 22266541 22268855 -195768303 - L1MA2 LINE L1 -146 6158 3772 2037 148 7 0 chr3 22268855 22269152 -195768006 - AluSx SINE Alu -13 299 1 10875 152 29 12 chr3 22269152 22269864 -195767294 - L1MA2 LINE L1 -2532 3772 3073 * 25895 82 8 3 chr3 22269859 22274433 -195762725 - L1PA7 LINE L1 0 6469 1867 42368 42 4 3 chr3 22274434 22280579 -195756579 - L1PA4 LINE L1 -2 6153 2 12201 107 5 7 chr3 22280579 22282470 -195754688 - L1PA7 LINE L1 -4579 1872 5 2039 117 37 27 chr3 22282476 22282774 -195754384 - AluSp SINE Alu -12 301 1 2390 224 23 5 chr3 22282810 22283414 -195753744 - L1MA2 LINE L1 -3065 3081 2467 1203 209 72 0 chr3 22283416 22283723 -195753435 - L1MCa LINE L1 -5344 1082 754 243 62 0 0 chr3 22284314 22284346 -195752812 - MIR SINE MIR -118 144 113 483 239 83 63 chr3 22284871 22284979 -195752179 - MIR SINE MIR -18 244 140 1323 166 42 143 chr3 22284979 22285413 -195751745 - MLT1B LTR MaLR 0 390 1 483 239 83 63 chr3 22285413 22285519 -195751639 - MIR SINE MIR -122 140 31 219 333 0 0 chr3 22285560 22285626 -195751532 + MIR SINE MIR 160 225 -37 2946 266 108 32 chr3 22286039 22286735 -195750423 + L1MEc LINE L1 53 694 -5702 1464 219 0 3 chr3 22286735 22287018 -195750140 + AluJo SINE Alu 1 282 -30 2946 266 108 32 chr3 22287018 22287853 -195749305 + L1MEc LINE L1 694 1875 -4521 804 175 0 0 chr3 22287858 22287978 -195749180 - FLAM_A SINE Alu -13 120 1 1956 128 0 3 chr3 22288136 22288440 -195748718 - Tigger2 DNA MER2_type -1 2717 2415 1572 119 9 107 chr3 22288437 22288765 -195748393 - Tigger2a DNA MER2_type -138 296 1 * 297 0 0 0 chr3 22288782 22288815 -195748343 + (CA)n Simple_repeat Simple_repeat 2 34 0 204 238 0 0 chr3 22288815 22288857 -195748301 + (TATATG)n Simple_repeat Simple_repeat 5 46 0 1271 125 175 12 chr3 22288947 22289219 -195747939 - AluSg1 SINE Alu 0 311 1 2427 50 0 3 chr3 22289260 22289559 -195747599 - AluY SINE Alu -13 298 1 217 233 75 83 chr3 22289919 22290039 -195747119 + MER5B DNA MER1_type 1 119 -59 263 279 82 74 chr3 22290093 22290215 -195746943 - MIR SINE MIR -90 172 50 204 319 99 60 chr3 22290266 22290548 -195746610 + L2 LINE L2 2341 2633 -681 * 350 300 75 57 chr3 22290535 22290762 -195746396 + L2 LINE L2 3042 3272 0 223 322 102 0 chr3 22290822 22290940 -195746218 + L2 LINE L2 3141 3270 -2 695 309 53 42 chr3 22290949 22291308 -195745850 + L2 LINE L2 2951 3313 0 214 308 88 0 chr3 22291315 22291406 -195745752 + MIR SINE MIR 64 162 -100 1394 262 51 15 chr3 22291434 22291827 -195745331 + MLT1I LTR MaLR 2 408 -1 381 248 144 13 chr3 22292000 22292153 -195745005 - MIR SINE MIR -70 192 20 206 307 228 0 chr3 22292852 22292966 -195744192 - MIR SINE MIR -77 185 46 191 273 34 34 chr3 22293128 22293216 -195743942 + MIR SINE MIR 65 152 -110 629 337 29 32 chr3 22293385 22293729 -195743429 - L1ME LINE L1 -513 5651 5309 2094 106 0 0 chr3 22294131 22294415 -195742743 + AluSg SINE Alu 7 290 -20 793 282 83 53 chr3 22295771 22296182 -195740976 + L2 LINE L2 2889 3311 -2 229 220 20 0 chr3 22296257 22296307 -195740851 + Charlie7 DNA MER1_type 51 101 -2511 246 298 18 9 chr3 22296493 22296607 -195740551 - L1ME3 LINE L1 -198 5964 5850 400 259 33 106 chr3 22297360 22297634 -195739524 + MER102b DNA MER1_type 83 336 -5 390 286 62 26 chr3 22297970 22298197 -195738961 + L2 LINE L2 2625 2859 -455 195 271 21 0 chr3 22298381 22298429 -195738729 + L2 LINE L2 3195 3243 -70 293 307 35 35 chr3 22298827 22298941 -195738217 - MIR SINE MIR -55 153 40 192 40 0 0 chr3 22299004 22299029 -195738129 + (CA)n Simple_repeat Simple_repeat 2 26 0 268 171 143 14 chr3 22299093 22299163 -195737995 - MIR SINE MIR -121 141 63 272 227 15 0 chr3 22299623 22299689 -195737469 + MER116 DNA Mariner 2 68 -12 774 274 56 22 chr3 22299952 22300362 -195736796 - L2 LINE L2 -310 3003 2564 816 180 60 18 chr3 22300848 22301015 -195736143 - MLT1J LTR MaLR -297 214 41 402 286 31 79 chr3 22301250 22301477 -195735681 - MLT1K LTR MaLR -214 374 159 1594 169 35 58 chr3 22301523 22301867 -195735291 - MLT1B LTR MaLR 0 390 55 208 250 148 37 chr3 22301970 22302078 -195735080 - L2 LINE L2 -221 3051 2932 429 215 23 23 chr3 22302288 22302460 -195734698 + CT-rich Low_complexity Low_complexity 1 172 0 204 40 0 0 chr3 22302718 22302743 -195734415 + (TTCCC)n Simple_repeat Simple_repeat 2 26 0 1370 181 75 10 chr3 22302770 22303062 -195734096 - AluJo SINE Alu -1 311 1 376 353 12 0 chr3 22303363 22303530 -195733628 - L1ME LINE L1 -710 5460 5292 195 301 97 21 chr3 22303762 22303855 -195733303 - MIR3 SINE MIR -53 155 56 282 303 125 7 chr3 22303972 22304124 -195733034 + MIR SINE MIR 22 191 -71 435 291 70 48 chr3 22304265 22304536 -195732622 + L2 LINE L2 2498 2774 -540 342 306 112 12 chr3 22304553 22304811 -195732347 + L2 LINE L2 2888 3171 -142 326 244 92 42 chr3 22304879 22304998 -195732160 + MIR SINE MIR 138 262 0 435 318 68 51 chr3 22305230 22305526 -195731632 + L2 LINE L2 3010 3310 -3 318 350 173 9 chr3 22305680 22305894 -195731264 - L3 LINE CR1 -722 855 607 353 331 0 8 chr3 22305981 22306105 -195731053 - MER103 DNA DNA -13 153 31 23 33 0 0 chr3 22306498 22306528 -195730630 + AT_rich Low_complexity Low_complexity 1 30 0 399 89 0 0 chr3 22307818 22307874 -195729284 + (CA)n Simple_repeat Simple_repeat 2 57 0 741 305 56 4 chr3 22308105 22308338 -195728820 - MIR SINE MIR 0 262 18 238 284 0 0 chr3 22308368 22308442 -195728716 - L2 LINE L2 -284 2988 2915 309 294 29 28 chr3 22309116 22309248 -195727910 - MIR SINE MIR -63 145 58 414 241 19 9 chr3 22309798 22309906 -195727252 + L2 LINE L2 3204 3312 -1 430 279 62 37 chr3 22310186 22310347 -195726811 + MIR SINE MIR 77 241 -21 276 286 0 82 chr3 22310628 22310726 -195726432 + MIR3 SINE MIR 91 180 -28 405 267 124 45 chr3 22310971 22311173 -195725985 + MIR SINE MIR 35 252 -10 351 343 7 21 chr3 22311335 22311478 -195725680 + MIR SINE MIR 108 248 -14 306 286 78 106 chr3 22311536 22311753 -195725405 - L2 LINE L2 0 3313 3103 539 155 64 8 chr3 22311864 22311984 -195725174 - MIR SINE MIR -71 137 36 382 268 71 71 chr3 22312170 22312353 -195724805 - MIR SINE MIR -3 259 77 450 188 31 21 chr3 22313371 22313467 -195723691 - MIR SINE MIR -109 153 57 269 343 28 0 chr3 22313666 22313774 -195723384 - L1MEd LINE L1 -5568 551 441 2001 142 10 10 chr3 22314256 22314736 -195722422 - AluSx SINE Alu 0 312 1 399 252 29 19 chr3 22314982 22315085 -195722073 - MIR SINE MIR -136 126 23 290 359 58 0 chr3 22315527 22315630 -195721528 - MIR SINE MIR -51 211 103 510 289 47 26 chr3 22315872 22316062 -195721096 - MIR SINE MIR -48 214 21 223 366 181 12 chr3 22316777 22317020 -195720138 + L3 LINE CR1 555 838 -739 456 174 0 0 chr3 22317034 22317126 -195720032 + CT-rich Low_complexity Low_complexity 3 94 0 335 309 246 5 chr3 22317919 22318139 -195719019 + L2 LINE L2 3000 3272 0 180 298 0 0 chr3 22318472 22318519 -195718639 - MIR3 SINE MIR -53 155 109 811 302 126 29 chr3 22321360 22321781 -195715377 + L2 LINE L2 2852 3313 0 400 191 191 0 chr3 22321826 22321952 -195715206 - MER53 DNA DNA 0 189 40 4228 206 42 31 chr3 22321963 22323200 -195713958 - L1MD1 LINE L1 -1 6241 4992 25 75 0 0 chr3 22323200 22323253 -195713905 + AT_rich Low_complexity Low_complexity 1 53 0 1798 186 0 12 chr3 22323273 22323606 -195713552 - L1MB3 LINE L1 -2 6181 5853 200 328 48 16 chr3 22323790 22323915 -195713243 - MIR3 SINE MIR -65 143 15 799 276 25 21 chr3 22324664 22324907 -195712251 - MIR SINE MIR -12 250 7 594 240 105 40 chr3 22325633 22325785 -195711373 + MIR SINE MIR 48 217 -45 786 194 156 0 chr3 22325785 22325965 -195711193 - MER3 DNA MER1_type 0 209 2 594 240 105 40 chr3 22325965 22326012 -195711146 + MIR SINE MIR 217 260 -2 199 348 70 0 chr3 22326632 22326747 -195710411 - MIR SINE MIR -22 240 118 389 369 6 13 chr3 22326965 22327122 -195710036 - MIR SINE MIR -86 176 21 2045 123 3 3 chr3 22327225 22327527 -195709631 + AluSx SINE Alu 1 302 -10 218 309 15 0 chr3 22327599 22327667 -195709491 - MIR SINE MIR -77 185 117 447 318 50 11 chr3 22327804 22327983 -195709175 + MIR SINE MIR 56 241 -21 795 281 56 35 chr3 22328403 22328780 -195708378 + L2 LINE L2 2245 2629 -685 923 275 83 27 chr3 22328956 22329491 -195707667 + L2 LINE L2 2583 3154 -159 967 246 33 0 chr3 22329676 22329887 -195707271 - MIR SINE MIR -25 237 20 288 307 109 15 chr3 22329918 22330055 -195707103 - L2 LINE L2 0 3313 3164 405 184 4 45 chr3 22330398 22330664 -195706494 + (TGGA)n Simple_repeat Simple_repeat 1 254 0 24 71 0 0 chr3 22330670 22330698 -195706460 + GC_rich Low_complexity Low_complexity 1 28 0 304 270 167 29 chr3 22331457 22331661 -195705497 - L2 LINE L2 -198 3115 2884 500 219 130 34 chr3 22332415 22332561 -195704597 - MER5A DNA MER1_type -26 163 4 1169 201 75 60 chr3 22332572 22332891 -195704267 - MER33 DNA MER1_type 0 324 1 261 333 181 9 chr3 22332891 22333107 -195704051 - L3 LINE CR1 -105 1472 1220 338 277 23 54 chr3 22333161 22333291 -195703867 - MIR SINE MIR -84 178 53 312 27 0 0 chr3 22334158 22334195 -195702963 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 185 342 111 26 chr3 22334201 22334318 -195702840 - L2 LINE L2 -15 3298 3172 251 305 12 0 chr3 22334446 22334528 -195702630 - L2 LINE L2 -335 2978 2896 498 253 29 58 chr3 22335193 22335367 -195701791 + MER5B DNA MER1_type 5 173 -5 2969 162 21 0 chr3 22335524 22336035 -195701123 - L1MB7 LINE L1 0 6184 5663 281 289 18 24 chr3 22336556 22336722 -195700436 + L2 LINE L2 2871 3035 -237 1182 271 95 24 chr3 22336763 22337225 -195699933 - L2 LINE L2 -2 3311 2817 353 293 54 24 chr3 22337427 22337594 -195699564 - L1MC5 LINE L1 -187 7774 7603 201 154 0 0 chr3 22337861 22337900 -195699258 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 200 321 0 18 chr3 22338449 22338561 -195698597 + (TG)n Simple_repeat Simple_repeat 1 110 0 457 183 0 62 chr3 22339168 22339438 -195697720 + GA-rich Low_complexity Low_complexity 1 253 0 759 120 0 46 chr3 22339444 22339619 -195697539 + (GGA)n Simple_repeat Simple_repeat 2 168 0 761 318 74 19 chr3 22339786 22340204 -195696954 - LTR16A LTR ERVL -9 441 1 401 261 39 26 chr3 22340285 22340438 -195696720 + MIR SINE MIR 31 185 -77 277 281 132 0 chr3 22340852 22340966 -195696192 - LTR33 LTR ERVL -28 493 365 277 277 50 43 chr3 22342061 22342202 -195694956 - MIR3 SINE MIR -61 147 6 693 274 109 43 chr3 22342377 22342680 -195694478 - MLT1L LTR MaLR -8 607 285 183 217 22 167 chr3 22342733 22342871 -195694287 - MIR SINE MIR -75 133 16 615 283 55 81 chr3 22343225 22343607 -195693551 - MLT1K LTR MaLR -6 582 211 680 297 246 24 chr3 22344416 22345033 -195692125 - L3 LINE CR1 -58 1519 766 389 319 92 0 chr3 22345782 22346011 -195691147 - LTR16A LTR ERVL 0 450 201 556 232 106 50 chr3 22346097 22346295 -195690863 - MER63A DNA MER1_type 0 210 2 581 358 46 7 chr3 22346658 22346965 -195690193 - L1MC4a LINE L1 -1874 5934 5616 1001 266 113 6 chr3 22347137 22347201 -195689957 - LTR33 LTR ERVL 0 521 465 2243 183 15 29 chr3 22347201 22347655 -195689503 + L1MB8 LINE L1 5731 6178 0 1001 266 113 6 chr3 22347655 22347954 -195689204 - LTR33 LTR ERVL -56 465 119 184 176 0 0 chr3 22348346 22348380 -195688778 - L2 LINE L2 -18 3254 3221 4031 162 57 14 chr3 22348979 22349768 -195687390 - L1MB7 LINE L1 0 6184 5362 1518 300 30 35 chr3 22349785 22350464 -195686694 - L1ME3A LINE L1 -13 6157 5483 182 247 106 12 chr3 22351017 22351102 -195686056 + L2 LINE L2 3173 3265 -7 183 184 0 0 chr3 22351652 22351690 -195685468 + GA-rich Low_complexity Low_complexity 3 40 0 259 323 32 0 chr3 22351806 22351899 -195685259 + MER58A DNA MER1_type 1 96 -11 701 214 20 2 chr3 22351899 22352071 -195685087 - L1ME3 LINE L1 -226 5936 5765 287 193 114 11 chr3 22352074 22352162 -195684996 - MIR SINE MIR -67 141 45 32 0 0 0 chr3 22353099 22353131 -195684027 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr3 22353593 22353621 -195683537 + AT_rich Low_complexity Low_complexity 1 28 0 226 321 0 12 chr3 22353623 22353704 -195683454 - L1PB1 LINE L1 -174 5977 5898 432 0 0 0 chr3 22354256 22354304 -195682854 + (TG)n Simple_repeat Simple_repeat 2 49 0 546 266 0 0 chr3 22354832 22355009 -195682149 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 409 244 49 34 chr3 22355342 22355497 -195681661 + MIR SINE MIR 105 262 0 475 294 112 6 chr3 22355745 22355915 -195681243 - Charlie8 DNA MER1_type -2205 212 25 318 290 75 0 chr3 22355962 22356069 -195681089 - MIR SINE MIR -61 147 33 189 0 0 0 chr3 22356152 22356173 -195680985 + (CA)n Simple_repeat Simple_repeat 2 22 0 1707 235 55 55 chr3 22357596 22358107 -195679051 - MLT1H LTR MaLR 0 549 39 324 252 170 0 chr3 22358216 22358351 -195678807 + L2 LINE L2 2423 2580 -734 304 200 147 0 chr3 22358406 22358481 -195678677 + MLT1J2 LTR MaLR 100 185 -265 258 233 17 0 chr3 22358514 22358574 -195678584 + MLT1J2 LTR MaLR 270 330 -120 345 235 182 0 chr3 22358679 22358811 -195678347 + L2 LINE L2 2886 3041 -231 869 246 84 0 chr3 22358917 22359132 -195678026 + MIR SINE MIR 5 237 -25 383 176 147 20 chr3 22359170 22359272 -195677886 + L2 LINE L2 3199 3313 0 2032 210 58 20 chr3 22360403 22360907 -195676251 + Charlie1b DNA MER1_type 1 523 0 413 268 56 91 chr3 22360969 22361075 -195676083 - MIR SINE MIR 0 262 154 3286 82 47 9 chr3 22361075 22361561 -195675597 + L1PB1 LINE L1 5678 6180 0 413 268 56 91 chr3 22361561 22361684 -195675474 - MIR SINE MIR -108 154 40 575 180 17 41 chr3 22361749 22361921 -195675237 - MER53 DNA DNA -20 169 2 2042 115 7 0 chr3 22362323 22362611 -195674547 - AluSx SINE Alu -22 290 1 228 246 51 51 chr3 22362617 22362755 -195674403 - L1ME4a LINE L1 0 6121 5984 487 322 60 21 chr3 22362844 22363077 -195674081 - L1MC4a LINE L1 -1982 5826 5585 269 333 57 21 chr3 22363190 22363331 -195673827 + L3 LINE CR1 1423 1568 -9 204 345 76 17 chr3 22363960 22364079 -195673079 + MIR SINE MIR 21 146 -116 221 333 191 14 chr3 22364707 22364848 -195672310 - MIR SINE MIR 0 262 97 569 350 0 18 chr3 22364932 22365155 -195672003 - MIR SINE MIR -37 225 7 1889 225 53 28 chr3 22365156 22365649 -195671509 - MLT1D LTR MaLR 0 505 1 896 208 19 42 chr3 22366109 22366321 -195670837 + MER3 DNA MER1_type 3 209 0 799 264 113 4 chr3 22367903 22368134 -195669024 - MIR SINE MIR -5 257 2 185 286 0 0 chr3 22368154 22368203 -195668955 - L2 LINE L2 -12 3260 3212 360 229 229 0 chr3 22368253 22368397 -195668761 - LTR33 LTR ERVL 0 521 345 352 238 74 0 chr3 22368547 22368669 -195668489 - LTR33 LTR ERVL -387 134 4 304 193 48 0 chr3 22369726 22369809 -195667349 - LTR33 LTR ERVL -134 387 301 279 270 103 16 chr3 22369820 22369946 -195667212 - LTR33 LTR ERVL -384 137 1 385 276 7 15 chr3 22370409 22370538 -195666620 + MIR SINE MIR 68 195 -64 484 120 104 32 chr3 22370614 22370739 -195666419 - MER3 DNA MER1_type 0 2576 2443 383 213 50 0 chr3 22370739 22370819 -195666339 - MER3 DNA MER1_type -80 129 46 298 136 0 0 chr3 22370974 22371018 -195666140 - MIR SINE MIR -59 149 106 333 248 28 64 chr3 22372020 22372129 -195665029 - MIR SINE MIR -114 148 44 313 333 34 0 chr3 22372264 22372381 -195664777 + MIR SINE MIR 72 192 -70 275 341 93 8 chr3 22373374 22373503 -195663655 - MIR3 SINE MIR -34 174 35 1241 224 58 19 chr3 22373510 22373818 -195663340 + MER33 DNA MER1_type 1 320 -4 530 330 25 6 chr3 22375027 22375289 -195661869 + L1MC4a LINE L1 5638 5824 -346 539 289 96 32 chr3 22375973 22376191 -195660967 - MIR SINE MIR -8 254 23 254 324 19 28 chr3 22376284 22376392 -195660766 - MIR SINE MIR -142 120 14 754 288 108 12 chr3 22377500 22377995 -195659163 - L2 LINE L2 -6 3307 2775 183 231 115 0 chr3 22378477 22378529 -195658629 + L2 LINE L2 1767 1824 -1490 * 291 244 24 37 chr3 22378513 22378595 -195658563 + MIR SINE MIR 63 143 -65 180 396 93 16 chr3 22378843 22379025 -195658133 + L3 LINE CR1 945 1140 -437 269 330 28 0 chr3 22379052 22379161 -195657997 + L3 LINE CR1 1313 1424 -153 858 155 8 10 chr3 22379439 22379946 -195657212 + GA-rich Low_complexity Low_complexity 1 506 0 330 130 0 0 chr3 22379946 22379992 -195657166 + (GGGA)n Simple_repeat Simple_repeat 1 46 0 580 198 17 17 chr3 22379993 22380170 -195656988 + GA-rich Low_complexity Low_complexity 2 178 0 241 297 12 48 chr3 22380195 22380360 -195656798 + GA-rich Low_complexity Low_complexity 2 160 0 440 273 111 52 chr3 22580726 22581187 -195455971 + L2 LINE L2 2825 3312 -1 220 312 144 0 chr3 22581343 22581468 -195455690 + MIR3 SINE MIR 44 186 -22 189 184 0 0 chr3 22581519 22581557 -195455601 - MER5A DNA MER1_type -84 105 68 451 123 0 14 chr3 22581559 22581664 -195455494 - AluSp/q SINE Alu 0 313 224 2330 234 52 73 chr3 22581787 22582033 -195455125 + L1ME2 LINE L1 4976 5226 -938 330 26 0 0 chr3 22582033 22582072 -195455086 + (TG)n Simple_repeat Simple_repeat 2 40 0 2330 234 52 73 chr3 22582072 22582137 -195455021 + L1ME2 LINE L1 5226 5291 -873 2178 110 0 0 chr3 22582137 22582445 -195454713 + AluSx SINE Alu 1 308 -4 2330 234 52 73 chr3 22582445 22583155 -195454003 + L1ME2 LINE L1 5291 5968 -196 1771 114 3 42 chr3 22583155 22583470 -195453688 + AluSx SINE Alu 5 308 0 2330 234 52 73 chr3 22583470 22583632 -195453526 + L1ME2 LINE L1 5968 6132 -32 1858 160 0 3 chr3 22583668 22583975 -195453183 - AluJb SINE Alu -6 306 1 37 69 0 0 chr3 22583975 22584047 -195453111 + AT_rich Low_complexity Low_complexity 1 72 0 755 275 143 45 chr3 22584218 22584303 -195452855 - L1ME3 LINE L1 -218 5944 5869 231 114 0 0 chr3 22584303 22584338 -195452820 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 755 275 143 45 chr3 22584338 22584678 -195452480 - L1ME3 LINE L1 -293 5869 5477 597 242 87 34 chr3 22584698 22584962 -195452196 - MER102b DNA MER1_type -1 340 63 829 158 0 0 chr3 22584962 22585095 -195452063 + FLAM_A SINE Alu 1 133 0 1830 156 0 9 chr3 22585507 22585822 -195451336 - AluJb SINE Alu 0 312 1 286 225 42 14 chr3 22585822 22585893 -195451265 + L2 LINE L2 2687 2759 -555 330 333 27 98 chr3 22585948 22586354 -195450804 + L2 LINE L2 2882 3258 -14 232 316 72 36 chr3 22586361 22586500 -195450658 - L2 LINE L2 -27 3245 3102 207 244 139 23 chr3 22586675 22586761 -195450397 + MIR SINE MIR 5 100 -162 3991 152 70 9 chr3 22586832 22587531 -195449627 - Tigger3(Golem) DNA MER2_type -4 3025 2284 511 262 9 0 chr3 22587531 22587638 -195449520 - Tigger3(Golem) DNA MER2_type -2921 108 1 648 238 13 7 chr3 22587639 22587725 -195449433 - MIR SINE MIR -24 238 149 1638 175 0 38 chr3 22587725 22588045 -195449113 - AluJb SINE Alu -2 310 3 648 238 13 7 chr3 22588045 22588109 -195449049 - MIR SINE MIR -113 149 87 235 204 0 0 chr3 22588752 22588768 -195448390 - L2 LINE L2 -1 3312 3264 244 91 0 0 chr3 22588768 22588801 -195448357 - MIR SINE MIR -11 251 219 268 274 84 0 chr3 22588883 22588978 -195448180 + MIR SINE MIR 14 116 -146 252 320 39 0 chr3 22589027 22589130 -195448028 + L2 LINE L2 3004 3110 -162 448 291 64 41 chr3 22589143 22589315 -195447843 - MIR3 SINE MIR -16 192 17 431 285 15 15 chr3 22589332 22589481 -195447677 + MIR SINE MIR 3 150 -58 685 216 144 16 chr3 22589578 22589772 -195447386 + MIR SINE MIR 26 244 -18 281 176 59 12 chr3 22589966 22590051 -195447107 + Charlie7 DNA MER1_type 2450 2538 -74 270 331 84 7 chr3 22590146 22590288 -195446870 - MIR SINE MIR -35 227 75 483 170 0 0 chr3 22590398 22590498 -195446660 + (CA)n Simple_repeat Simple_repeat 2 101 0 236 267 50 50 chr3 22591088 22591189 -195445969 - MIR SINE MIR -62 146 46 279 309 72 14 chr3 22591459 22591598 -195445560 + MIR SINE MIR 13 159 -103 215 226 16 32 chr3 22591871 22591933 -195445225 + MIR SINE MIR 181 241 -21 1231 269 74 12 chr3 22592408 22592828 -195444330 - L1ME3A LINE L1 -5 6165 5720 236 172 17 0 chr3 22592928 22592986 -195444172 + CT-rich Low_complexity Low_complexity 4 62 0 976 270 150 37 chr3 22593173 22593713 -195443445 - L2 LINE L2 -680 2634 2034 275 49 24 0 chr3 22594093 22594134 -195443024 + (CA)n Simple_repeat Simple_repeat 2 43 0 246 224 0 53 chr3 22594630 22594706 -195442452 + L2 LINE L2 2916 2987 -285 452 294 40 0 chr3 22594740 22594866 -195442292 - MER94 DNA DNA -1 133 3 256 70 93 0 chr3 22594877 22594920 -195442238 + L2 LINE L2 3016 3062 -210 1456 222 74 15 chr3 22595067 22595472 -195441686 + MLT1C LTR MaLR 34 462 -5 914 180 40 31 chr3 22595489 22595711 -195441447 - L1MB8 LINE L1 0 6178 5955 1180 209 130 25 chr3 22595713 22596206 -195440952 + LTR48B LTR ERV1 5 585 -59 345 167 0 0 chr3 22596258 22596312 -195440846 + LTR49 LTR ERV1 542 595 0 1985 150 0 0 chr3 22596312 22596626 -195440532 - L1MB8 LINE L1 -218 5960 5647 1510 135 42 0 chr3 22596979 22597238 -195439920 - AluJo SINE Alu -22 290 21 463 323 56 5 chr3 22598755 22598950 -195438208 - MIR SINE MIR -8 254 50 208 203 6 13 chr3 22599020 22599088 -195438070 - L2 LINE L2 -309 3004 2938 * 240 167 21 21 chr3 22599079 22599127 -195438031 + MIR SINE MIR 96 143 -65 239 302 0 31 chr3 22599786 22599882 -195437276 - L2 LINE L2 -215 3057 2965 490 283 17 0 chr3 22599893 22600039 -195437119 + MIR SINE MIR 14 166 -42 720 247 70 5 chr3 22600052 22600238 -195436920 - MER63A DNA MER1_type -10 200 3 372 364 6 6 chr3 22600676 22600838 -195436320 - L2 LINE L2 -528 2786 2625 1624 217 65 5 chr3 22600896 22601265 -195435893 + MLT1J2 LTR MaLR 38 428 -22 739 133 0 0 chr3 22601839 22601944 -195435214 + FLAM_A SINE Alu 25 129 -13 534 211 102 0 chr3 22601973 22602101 -195435057 - MIR SINE MIR -13 249 109 1666 162 0 14 chr3 22602779 22603063 -195434095 + AluJo SINE Alu 1 280 -32 729 0 0 0 chr3 22603063 22603144 -195434014 + (TAAAA)n Simple_repeat Simple_repeat 1 81 0 344 250 108 68 chr3 22603181 22603357 -195433801 + MLT1L LTR MaLR 212 394 -221 348 239 77 34 chr3 22603619 22603736 -195433422 - MLT1K LTR MaLR -300 288 167 237 215 108 15 chr3 22603716 22603781 -195433377 - MLT1K LTR MaLR -333 255 185 * 197 282 154 0 chr3 22604079 22604196 -195432962 + MIR3 SINE MIR 45 179 -29 372 260 177 21 chr3 22604206 22604398 -195432760 + MIR SINE MIR 28 249 -13 395 245 71 5 chr3 22605107 22605261 -195431897 - MIR SINE MIR -61 147 14 642 299 128 7 chr3 22605365 22605646 -195431512 + L2 LINE L2 2956 3270 -2 239 239 0 0 chr3 22606529 22606575 -195430583 - L3 LINE CR1 -640 937 892 300 281 47 31 chr3 22606662 22606790 -195430368 + L2 LINE L2 3119 3248 -24 1128 145 16 57 chr3 22606928 22607176 -195429982 - AluJo SINE Alu -74 238 1 207 57 0 94 chr3 22607382 22607435 -195429723 + (TAAAA)n Simple_repeat Simple_repeat 4 51 0 183 139 0 0 chr3 22607736 22607772 -195429386 + (T)n Simple_repeat Simple_repeat 1 36 0 863 143 71 15 chr3 22607893 22608207 -195428951 - L1MCa LINE L1 -4501 1925 1503 2000 120 0 7 chr3 22608210 22608494 -195428664 + MER4D LTR ERV1 4 285 -618 1492 174 42 11 chr3 22608598 22608885 -195428273 - AluJo SINE Alu -13 299 4 478 225 120 38 chr3 22608907 22609130 -195428028 + L1ME4a LINE L1 5622 5855 -266 1273 111 72 53 chr3 22609347 22609423 -195427735 - L1MA5A LINE L1 0 6297 6224 1469 130 13 26 chr3 22609423 22609653 -195427505 - MER30 DNA MER1_type -2 228 2 1273 111 72 53 chr3 22609653 22609838 -195427320 - L1MA5A LINE L1 -73 6224 6031 21 0 0 0 chr3 22609982 22610003 -195427155 + AT_rich Low_complexity Low_complexity 1 21 0 2279 148 87 5 chr3 22610228 22610675 -195426483 + MER31A LTR ERV1 1 484 -1 202 304 76 0 chr3 22612153 22612245 -195424913 - MIR SINE MIR -59 203 105 2780 142 81 86 chr3 22614273 22614509 -195422649 - L1MB2 LINE L1 -37 6134 5898 2032 116 0 13 chr3 22614509 22614810 -195422348 - AluSq SINE Alu -16 297 1 2780 142 81 86 chr3 22614810 22615086 -195422072 - L1MB2 LINE L1 -273 5898 5620 2155 99 26 0 chr3 22615086 22615388 -195421770 + AluSp SINE Alu 2 311 -2 2780 142 81 86 chr3 22615388 22615542 -195421616 - L1MB2 LINE L1 -551 5620 5467 985 211 37 29 chr3 22615542 22615784 -195421374 - AluJo SINE Alu -3 309 66 752 184 133 82 chr3 22616925 22617158 -195420000 - MIR SINE MIR 0 262 18 534 245 20 27 chr3 22617982 22618129 -195419029 - L2 LINE L2 -1 3312 3167 651 213 0 53 chr3 22618180 22618418 -195418740 + MLT1D LTR MaLR 233 505 0 318 301 0 0 chr3 22618472 22618555 -195418603 - L2 LINE L2 -5 3308 3226 851 114 0 23 chr3 22618585 22618717 -195418441 + AluJ SINE Alu 1 129 -183 378 0 0 0 chr3 22619100 22619142 -195418016 + (CA)n Simple_repeat Simple_repeat 2 43 0 1376 249 22 40 chr3 22619360 22619472 -195417686 - L1MC4 LINE L1 0 8042 7930 1818 143 3 10 chr3 22619472 22619773 -195417385 + AluJb SINE Alu 1 299 -13 1376 249 22 40 chr3 22619773 22620162 -195416996 - L1MC4 LINE L1 -112 7930 7550 246 153 0 0 chr3 22620599 22620658 -195416500 + T-rich Low_complexity Low_complexity 1 59 0 22 0 0 0 chr3 22620788 22620810 -195416348 + AT_rich Low_complexity Low_complexity 1 22 0 810 185 38 8 chr3 22620874 22621134 -195416024 - L1MD2 LINE L1 0 6359 6041 1245 247 101 33 chr3 22621640 22622037 -195415121 + MLT1E LTR MaLR 52 475 -118 672 196 75 117 chr3 22622042 22622199 -195414959 + MLT1B LTR MaLR 2 145 -245 608 233 17 85 chr3 22622199 22622294 -195414864 + AluJ SINE Alu 138 217 -85 1897 105 9 62 chr3 22622294 22622619 -195414539 - AluSx SINE Alu -4 308 1 608 233 17 85 chr3 22622619 22622699 -195414459 + AluJ SINE Alu 217 301 -1 672 196 75 117 chr3 22622699 22622806 -195414352 + MLT1B LTR MaLR 145 255 -135 225 256 51 103 chr3 22622923 22623001 -195414157 + L2 LINE L2 3191 3264 -8 1948 215 113 59 chr3 22623946 22624573 -195412585 + Charlie1a DNA MER1_type 9 669 -786 3334 145 38 33 chr3 22624680 22625188 -195411970 - L1MA5A LINE L1 -470 5827 5323 180 0 0 0 chr3 22625188 22625208 -195411950 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3334 145 38 33 chr3 22625208 22625574 -195411584 - L1MA5A LINE L1 -974 5323 4963 2086 108 3 19 chr3 22625574 22625881 -195411277 + AluSp SINE Alu 6 307 -6 3334 145 38 33 chr3 22625881 22626003 -195411155 - L1MA5A LINE L1 -1334 4963 4843 2127 123 0 3 chr3 22626003 22626312 -195410846 + AluSx SINE Alu 1 308 -4 1209 121 20 15 chr3 22626312 22626511 -195410647 - L1MA5A LINE L1 -1817 4329 4130 331 298 106 13 chr3 22626764 22626915 -195410243 + L1M4 LINE L1 3248 3412 -2734 313 299 108 29 chr3 22627440 22627578 -195409580 - MIR SINE MIR -66 142 13 1583 256 162 41 chr3 22628922 22629932 -195407226 - HAL1 LINE L1 -606 1901 769 3384 140 28 2 chr3 22630744 22631278 -195405880 + MER4D LTR ERV1 347 894 -9 2632 154 90 67 chr3 22631328 22631950 -195405208 - L1MCb LINE L1 -4848 1197 956 1926 134 3 7 chr3 22631950 22632240 -195404918 - AluSx SINE Alu -23 289 1 2632 154 90 67 chr3 22632240 22632366 -195404792 - L1MCb LINE L1 -5089 956 834 572 266 179 4 chr3 22632485 22632714 -195404444 + L2 LINE L2 3040 3308 -5 28 71 0 0 chr3 22633227 22633283 -195403875 + AT_rich Low_complexity Low_complexity 1 56 0 450 282 110 31 chr3 22634396 22634623 -195402535 + MIR SINE MIR 16 260 -2 295 200 35 24 chr3 22635034 22635119 -195402039 + MIR SINE MIR 37 122 -140 50 83 0 0 chr3 22635254 22635374 -195401784 + GC_rich Low_complexity Low_complexity 1 120 0 260 228 0 30 chr3 22635381 22635482 -195401676 + (CCGCG)n Simple_repeat Simple_repeat 5 102 0 770 279 29 24 chr3 22635824 22636032 -195401126 - MER58A DNA MER1_type 0 224 16 898 338 159 27 chr3 22636156 22637080 -195400078 + L2 LINE L2 1932 2977 -337 25 0 0 0 chr3 22637907 22637932 -195399226 + AT_rich Low_complexity Low_complexity 1 25 0 265 259 52 0 chr3 22638098 22638156 -195399002 + L2 LINE L2 3181 3241 -31 1879 58 0 8 chr3 22638333 22638573 -195398585 - AluSc SINE Alu -1 308 71 2458 74 0 0 chr3 22638573 22638884 -195398274 - AluY SINE Alu 0 311 1 474 185 12 0 chr3 22638885 22638966 -195398192 - AluSc SINE Alu -226 83 2 2627 170 52 6 chr3 22639601 22640137 -195397021 + L1MB8 LINE L1 5612 6172 -6 2282 62 3 3 chr3 22640139 22640430 -195396728 + AluY SINE Alu 1 291 -20 286 263 144 42 chr3 22640568 22640922 -195396236 + L1MEc LINE L1 1428 1817 -4579 1631 138 67 32 chr3 22640991 22641303 -195395855 + Tigger2a DNA MER2_type 21 343 -91 265 292 22 0 chr3 22641486 22641623 -195395535 + L1MEc LINE L1 2133 2272 -4124 1908 154 3 0 chr3 22641623 22641922 -195395236 + AluJb SINE Alu 1 300 -12 2254 66 0 10 chr3 22642207 22642495 -195394663 + AluSg SINE Alu 1 285 -25 254 191 21 0 chr3 22643086 22643133 -195394025 - MIR SINE MIR -62 146 99 189 227 0 0 chr3 22643948 22643992 -195393166 + L3 LINE CR1 1468 1511 -66 245 302 70 0 chr3 22644253 22644339 -195392819 + MIR SINE MIR 48 139 -123 243 0 0 0 chr3 22644660 22644687 -195392471 + (TG)n Simple_repeat Simple_repeat 2 28 0 744 239 12 0 chr3 22644731 22644894 -195392264 - FRAM SINE Alu -1 165 1 2022 85 11 11 chr3 22644915 22645196 -195391962 - AluSx SINE Alu -17 295 15 418 247 133 20 chr3 22645406 22645556 -195391602 + MIR3 SINE MIR 8 174 -34 2058 130 0 3 chr3 22645562 22645863 -195391295 + AluSx SINE Alu 1 300 -12 731 191 15 0 chr3 22646179 22646310 -195390848 + FLAM_A SINE Alu 1 133 0 217 234 31 0 chr3 22646948 22647012 -195390146 - MIR SINE MIR -97 111 46 * 1061 188 25 15 chr3 22647004 22647206 -195389952 - MIR SINE MIR -35 227 24 684 240 112 46 chr3 22647592 22647896 -195389262 + MER5C DNA MER1_type 1 324 0 680 117 16 39 chr3 22648042 22648170 -195388988 - MER20 DNA MER1_type 0 219 95 1518 158 38 10 chr3 22648970 22649262 -195387896 - AluJb SINE Alu -12 300 1 297 151 38 0 chr3 22649269 22649322 -195387836 + Alu SINE Alu 245 299 -3 186 209 0 0 chr3 22650113 22650156 -195387002 + (TAGA)n Simple_repeat Simple_repeat 3 45 0 456 19 0 0 chr3 22650158 22650211 -195386947 + (CA)n Simple_repeat Simple_repeat 2 54 0 2094 101 0 3 chr3 22650260 22650556 -195386602 - AluSq SINE Alu -1 312 18 1243 242 80 102 chr3 22652039 22652394 -195384764 + L1M4 LINE L1 3548 3909 -2237 840 184 38 6 chr3 22652394 22652552 -195384606 - AluJo/FRAM SINE Alu -3 299 137 297 114 23 0 chr3 22652552 22652596 -195384562 - Alu SINE Alu -254 45 1 1243 242 80 102 chr3 22652596 22652850 -195384308 + L1M4 LINE L1 3908 4184 -1962 2015 146 0 0 chr3 22652850 22653158 -195384000 + AluSx SINE Alu 1 308 -4 1243 242 80 102 chr3 22653158 22653268 -195383890 + L1M4 LINE L1 4184 4295 -1851 21 0 0 0 chr3 22653393 22653414 -195383744 + AT_rich Low_complexity Low_complexity 1 21 0 493 264 169 7 chr3 22654282 22654430 -195382728 + MER5A DNA MER1_type 4 175 -14 1105 173 59 0 chr3 22654515 22654735 -195382423 - Tigger7 DNA MER2_type 0 2587 2355 426 285 103 0 chr3 22654981 22655146 -195382012 + L1MC4a LINE L1 5747 5928 -1880 189 0 0 0 chr3 22655176 22655197 -195381961 + (TG)n Simple_repeat Simple_repeat 2 22 0 295 229 43 14 chr3 22656529 22656599 -195380559 + L3 LINE CR1 987 1058 -519 186 71 0 0 chr3 22656884 22656912 -195380246 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1541 129 165 39 chr3 22657042 22657209 -195379949 - THE1C LTR MaLR 0 375 230 297 0 0 0 chr3 22657209 22657242 -195379916 + (GA)n Simple_repeat Simple_repeat 1 33 0 1541 129 165 39 chr3 22657242 22657407 -195379751 - THE1C LTR MaLR -145 230 1 282 296 130 35 chr3 22658140 22658255 -195378903 + MIR SINE MIR 14 139 -123 1217 124 0 0 chr3 22658957 22659135 -195378023 - AluSg/x SINE Alu -6 304 127 21 57 0 0 chr3 22659592 22659627 -195377531 + AT_rich Low_complexity Low_complexity 1 35 0 236 277 54 69 chr3 22660117 22660247 -195376911 - MIR SINE MIR -115 147 20 2221 90 3 7 chr3 22660579 22660889 -195376269 + AluSc SINE Alu 1 309 0 1491 234 37 18 chr3 22661200 22661581 -195375577 - MER72 LTR ERV1 -334 388 1 484 285 75 5 chr3 22661683 22661869 -195375289 - MIR SINE MIR -6 256 58 493 278 194 15 chr3 22661931 22662194 -195374964 - MLT1J2 LTR MaLR 0 450 141 549 186 41 3 chr3 22662220 22662395 -195374763 - LTR16A1 LTR ERVL 0 457 232 454 259 82 27 chr3 22662427 22662574 -195374584 - LTR16A1 LTR ERVL -302 155 1 301 207 58 11 chr3 22663404 22663491 -195373667 - MIR SINE MIR -77 131 41 376 218 109 54 chr3 22663831 22663978 -195373180 - MER113 DNA MER1_type? -78 443 289 1850 147 3 3 chr3 22664110 22664403 -195372755 + AluJb SINE Alu 1 293 -19 282 257 101 74 chr3 22664849 22664997 -195372161 - L2 LINE L2 -6 3266 3115 367 225 46 43 chr3 22664997 22665195 -195371963 - MIR SINE MIR 0 262 29 1160 122 5 41 chr3 22665202 22665399 -195371759 - AluSp SINE Alu -13 300 111 434 198 58 50 chr3 22665509 22665630 -195371528 - MIR SINE MIR -57 151 30 191 224 35 17 chr3 22666545 22666603 -195370555 + MIR SINE MIR 86 144 -118 324 200 137 63 chr3 22666757 22666852 -195370306 - MIR SINE MIR -114 148 47 227 256 0 12 chr3 22667229 22667315 -195369843 + T-rich Low_complexity Low_complexity 5 89 0 2010 119 10 0 chr3 22667550 22667677 -195369481 + AluSx SINE Alu 1 125 -187 207 0 0 0 chr3 22667677 22667700 -195369458 + (CA)n Simple_repeat Simple_repeat 2 24 0 2010 119 10 0 chr3 22667700 22667874 -195369284 + AluSx SINE Alu 125 305 -7 180 200 0 0 chr3 22668144 22668184 -195368974 + A-rich Low_complexity Low_complexity 1 40 0 267 307 0 34 chr3 22670180 22670356 -195366802 + C-rich Low_complexity Low_complexity 3 172 0 185 226 57 19 chr3 22671614 22671667 -195365491 - MIR3 SINE MIR -46 162 108 252 258 14 14 chr3 22671855 22671939 -195365219 - MIR SINE MIR -72 136 67 1236 174 13 4 chr3 22672174 22672410 -195364748 - AluJb SINE Alu -3 309 72 534 239 9 0 chr3 22672862 22672975 -195364183 - MIR SINE MIR -143 119 6 422 235 228 0 chr3 22673222 22673371 -195363787 + MER5A DNA MER1_type 7 189 0 1153 101 12 6 chr3 22674351 22674519 -195362639 - AluY SINE Alu -7 304 136 383 294 48 0 chr3 22674521 22674647 -195362511 + MIR SINE MIR 84 215 -47 416 257 71 5 chr3 22674753 22674904 -195362254 - MIR SINE MIR -13 249 88 726 281 128 0 chr3 22675417 22675666 -195361492 - ERVL LTR ERVL -3649 2115 1835 748 172 8 15 chr3 22675792 22675926 -195361232 + FLAM_C SINE Alu 1 133 0 1576 130 80 11 chr3 22676169 22676445 -195360713 + AluSx SINE Alu 1 295 -17 204 315 183 7 chr3 22676538 22676741 -195360417 + MIR SINE MIR 20 255 -7 855 165 0 0 chr3 22676911 22677044 -195360114 - FLAM_C SINE Alu 0 133 1 21 82 0 0 chr3 22677050 22677099 -195360059 + AT_rich Low_complexity Low_complexity 1 49 0 1736 116 118 12 chr3 22677119 22677448 -195359710 - LTR23 LTR ERV1 -1 436 73 1988 94 0 22 chr3 22677957 22678234 -195358924 + AluSg SINE Alu 9 279 -31 23 0 0 0 chr3 22678235 22678258 -195358900 + GC_rich Low_complexity Low_complexity 1 23 0 279 298 165 8 chr3 22678330 22678451 -195358707 - L2 LINE L2 -4 3268 3129 799 165 0 0 chr3 22678579 22678700 -195358458 - FRAM SINE Alu -18 158 38 385 228 119 51 chr3 22679124 22679306 -195357852 + L1MC4a LINE L1 5653 5747 -407 2327 84 63 20 chr3 22679306 22679653 -195357505 - THE1B LTR MaLR -2 362 1 385 228 119 51 chr3 22679653 22679729 -195357429 + L1MC4a LINE L1 5747 5816 -338 386 259 118 15 chr3 22680268 22680403 -195356755 - MIR SINE MIR -112 150 2 2363 81 0 0 chr3 22680449 22680756 -195356402 - AluY SINE Alu -4 307 1 1652 162 0 32 chr3 22681836 22682145 -195355013 - AluJb SINE Alu -13 299 1 210 351 0 14 chr3 22683004 22683078 -195354080 + MIR SINE MIR 22 94 -114 228 163 23 0 chr3 22683459 22683502 -195353656 + MIR SINE MIR 78 121 -141 25 0 0 0 chr3 22684044 22684069 -195353089 + AT_rich Low_complexity Low_complexity 1 25 0 785 253 77 40 chr3 22684248 22684623 -195352535 - L2 LINE L2 -114 3199 2811 2285 210 78 30 chr3 22685020 22685662 -195351496 - L1MC4 LINE L1 -894 7148 6476 2235 134 0 3 chr3 22686274 22686573 -195350585 - AluSx SINE Alu -14 298 1 209 154 58 0 chr3 22687116 22687168 -195349990 - L2 LINE L2 -339 2974 2920 505 344 28 31 chr3 22687195 22687483 -195349675 - L2 LINE L2 -485 2829 2543 1781 177 0 3 chr3 22687842 22688130 -195349028 + AluJo SINE Alu 9 295 -17 21 71 0 0 chr3 22689085 22689127 -195348031 + AT_rich Low_complexity Low_complexity 1 42 0 437 303 130 52 chr3 22689147 22689285 -195347873 + L1M4 LINE L1 2121 2286 -3860 2146 153 0 3 chr3 22689285 22689598 -195347560 + AluSx SINE Alu 1 312 0 437 303 130 52 chr3 22689598 22689690 -195347468 + L1M4 LINE L1 2286 2369 -3777 301 130 37 0 chr3 22689706 22689760 -195347398 + L1M4 LINE L1 2962 3017 -3129 572 265 117 0 chr3 22690321 22690483 -195346675 + MIR SINE MIR 79 259 -3 359 207 47 24 chr3 22690987 22691156 -195346002 + (CAGAGA)n Simple_repeat Simple_repeat 2 174 0 4885 51 8 1 chr3 22691256 22692065 -195345093 - L1PA8 LINE L1 -283 5889 5078 2655 127 27 2 chr3 22692423 22692833 -195344325 - MSTB LTR MaLR -4 422 3 1696 108 9 4 chr3 22693503 22693734 -195343424 + AluSg/x SINE Alu 66 297 -15 1260 155 9 23 chr3 22695549 22695768 -195341390 - AluSq SINE Alu -13 300 85 1502 99 0 0 chr3 22695768 22695950 -195341208 - AluSx SINE Alu -130 182 1 618 39 0 0 chr3 22695950 22696027 -195341131 - AluSq/x SINE Alu -177 136 60 24 0 0 0 chr3 22696103 22696127 -195341031 + AT_rich Low_complexity Low_complexity 1 24 0 2118 147 0 3 chr3 22696190 22696503 -195340655 + AluJb SINE Alu 1 312 0 419 277 55 15 chr3 22697295 22697497 -195339661 + L2 LINE L2 2892 3101 -171 184 247 99 12 chr3 22697555 22697636 -195339522 + L2 LINE L2 3222 3309 -4 197 299 186 21 chr3 22697640 22697737 -195339421 + L2 LINE L2 3160 3272 0 2466 79 3 3 chr3 22697862 22698167 -195338991 + AluSg SINE Alu 1 305 -5 995 165 64 16 chr3 22698169 22698357 -195338801 - AluJb SINE Alu -115 197 1 262 341 15 23 chr3 22698980 22699112 -195338046 + L2 LINE L2 2919 3049 -223 616 266 55 5 chr3 22699368 22699567 -195337591 - MLT1K LTR MaLR -242 346 138 359 291 27 7 chr3 22700023 22700165 -195336993 - MIR SINE MIR -58 150 4 26 30 0 0 chr3 22700641 22700674 -195336484 + AT_rich Low_complexity Low_complexity 1 33 0 746 250 9 51 chr3 22700726 22700942 -195336216 - MER58C DNA MER1_type -8 207 1 2179 122 7 7 chr3 22701148 22701451 -195335707 - AluSx SINE Alu -7 305 3 1421 155 146 30 chr3 22702384 22702720 -195334438 + THE1C LTR MaLR 1 375 0 2215 154 48 24 chr3 22702870 22703215 -195333943 + MSTB LTR MaLR 1 359 -67 2012 147 3 0 chr3 22703215 22703507 -195333651 - AluJb SINE Alu -18 294 2 2215 154 48 24 chr3 22703507 22703577 -195333581 + MSTB LTR MaLR 359 426 0 1900 80 22 36 chr3 22703866 22704140 -195333018 - AluY SINE Alu -41 270 1 269 262 0 0 chr3 22704143 22704204 -195332954 - MER5A DNA MER1_type -1 188 128 859 168 95 10 chr3 22704206 22704421 -195332737 + L1ME1 LINE L1 5238 5468 -698 810 179 0 15 chr3 22704421 22704555 -195332603 - FLAM_C SINE Alu -11 132 1 2406 236 72 5 chr3 22704578 22705204 -195331954 + L1ME1 LINE L1 5479 6146 -20 2166 123 0 22 chr3 22705204 22705522 -195331636 - AluSx SINE Alu -1 311 1 249 265 48 0 chr3 22705580 22705663 -195331495 - MER5A DNA MER1_type -53 136 50 269 50 0 25 chr3 22705673 22705713 -195331445 + (TCCCC)n Simple_repeat Simple_repeat 4 42 0 235 0 86 0 chr3 22705714 22705749 -195331409 + CT-rich Low_complexity Low_complexity 4 41 0 1787 153 12 40 chr3 22705896 22706217 -195330941 + AluJo SINE Alu 1 312 0 1436 130 60 15 chr3 22706220 22706534 -195330624 + MLT2C2 LTR ERVL 25 366 -48 431 167 11 0 chr3 22706554 22706644 -195330514 + (TGGA)n Simple_repeat Simple_repeat 3 93 0 278 77 0 0 chr3 22706644 22706683 -195330475 + MLT2C2 LTR ERVL 426 464 0 366 269 37 9 chr3 22706730 22706838 -195330320 + MLT1K LTR MaLR 2 112 -476 730 258 135 16 chr3 22706898 22707302 -195329856 + MLT1K LTR MaLR 85 570 -18 504 246 75 53 chr3 22707593 22707780 -195329378 - L1ME LINE L1 -612 5552 5362 312 256 0 0 chr3 22707959 22708037 -195329121 - MIR SINE MIR -96 166 89 692 321 172 20 chr3 22708148 22708647 -195328511 - MLT1L LTR MaLR -7 608 34 269 156 0 94 chr3 22708691 22708755 -195328403 + L1MC/D LINE L1 5411 5468 -2527 2084 111 7 26 chr3 22708755 22709062 -195328096 - AluSx SINE Alu -9 303 3 209 348 143 12 chr3 22709269 22709430 -195327728 + L2 LINE L2 2450 2631 -683 225 0 0 0 chr3 22709677 22709702 -195327456 + (A)n Simple_repeat Simple_repeat 1 25 0 331 171 0 51 chr3 22710016 22710133 -195327025 + G-rich Low_complexity Low_complexity 1 111 0 185 250 17 0 chr3 22710448 22710508 -195326650 + L2 LINE L2 2917 2977 -295 711 265 93 63 chr3 22710643 22711137 -195326021 + L2 LINE L2 2804 3312 -1 189 291 58 29 chr3 22711137 22711240 -195325918 + MIR3 SINE MIR 98 203 -5 207 0 0 0 chr3 22711599 22711622 -195325536 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 372 22 0 0 chr3 22711621 22711666 -195325492 + (TG)n Simple_repeat Simple_repeat 2 46 0 261 109 0 0 chr3 22711783 22711829 -195325329 + (CA)n Simple_repeat Simple_repeat 1 46 0 395 109 11 71 chr3 22712372 22712555 -195324603 + (TGGGGG)n Simple_repeat Simple_repeat 6 177 0 188 259 37 0 chr3 22712849 22712903 -195324255 - MIR SINE MIR -63 145 90 473 180 22 93 chr3 22712972 22713111 -195324047 - MIR SINE MIR -105 157 29 235 316 0 26 chr3 22713126 22713202 -195323956 - L3 LINE CR1 -539 1038 965 250 296 70 15 chr3 22713546 22713705 -195323453 - MIR SINE MIR -54 208 35 341 255 46 27 chr3 22713783 22713918 -195323240 + MIR SINE MIR 9 144 -67 278 337 21 0 chr3 22714498 22714593 -195322565 + L2 LINE L2 3164 3260 -12 1665 142 42 55 chr3 22715298 22715608 -195321550 + AluJo SINE Alu 5 310 -2 687 256 66 22 chr3 22715764 22716149 -195321009 + MLT1K LTR MaLR 136 588 0 281 235 71 12 chr3 22716594 22716679 -195320479 + MIR SINE MIR 33 122 -86 215 253 0 38 chr3 22716744 22716823 -195320335 - MIR SINE MIR -139 123 48 208 256 35 0 chr3 22717425 22717511 -195319647 + (GGGTG)n Simple_repeat Simple_repeat 3 91 0 * 210 192 0 39 chr3 22717464 22717516 -195319642 + G-rich Low_complexity Low_complexity 3 52 0 478 204 28 85 chr3 22717702 22717878 -195319280 + MER104 DNA Tc2 9 174 -6 652 253 97 4 chr3 22717882 22718244 -195318914 - L2 LINE L2 -159 3154 2760 1006 229 110 14 chr3 22719009 22719301 -195317857 + MLT1H LTR MaLR 1 320 -229 470 336 61 39 chr3 22720216 22720940 -195316218 - L2 LINE L2 -29 3284 2550 1843 151 0 0 chr3 22721389 22721641 -195315517 - AluJb SINE Alu -60 252 1 340 156 141 0 chr3 22721644 22721708 -195315450 - MER5A DNA MER1_type -116 73 1 285 236 40 92 chr3 22721822 22721996 -195315162 + L1MEd LINE L1 1046 1210 -4909 404 274 80 47 chr3 22722198 22722410 -195314748 + MIR SINE MIR 34 252 -10 337 216 202 0 chr3 22722736 22722853 -195314305 + MIR SINE MIR 17 153 -58 443 266 79 38 chr3 22723222 22723512 -195313646 - L1MEd LINE L1 -5043 1076 775 227 200 15 15 chr3 22723619 22723684 -195313474 - L1MEd LINE L1 -5460 659 595 2261 121 0 6 chr3 22724467 22724780 -195312378 + AluSx SINE Alu 1 311 -1 2412 68 3 3 chr3 22724782 22725074 -195312084 + AluY SINE Alu 3 294 -17 362 353 137 29 chr3 22725388 22725526 -195311632 - L1M4 LINE L1 -1082 5064 4942 1686 183 0 45 chr3 22725526 22725837 -195311321 + AluJo SINE Alu 1 297 -15 362 353 137 29 chr3 22725837 22725976 -195311182 - L1M4 LINE L1 -1204 4942 4757 381 258 11 0 chr3 22726415 22726508 -195310650 + MIR SINE MIR 81 174 -88 415 239 28 18 chr3 22726626 22726735 -195310423 + MIR SINE MIR 38 147 -115 261 217 48 12 chr3 22726850 22726933 -195310225 - MER20B DNA MER1_type -605 178 93 268 143 61 0 chr3 22727323 22727372 -195309786 - MIR SINE MIR -98 164 113 369 267 89 30 chr3 22727733 22727898 -195309260 - MIR3 SINE MIR -29 233 39 267 234 57 65 chr3 22728183 22728307 -195308851 + MIR SINE MIR 108 230 -32 375 296 195 19 chr3 22728352 22728491 -195308667 - L2 LINE L2 0 3313 3200 189 74 0 0 chr3 22728491 22728518 -195308640 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 375 296 195 19 chr3 22728518 22728635 -195308523 - L2 LINE L2 -113 3200 3012 199 355 28 14 chr3 22730968 22731100 -195306058 - MIR SINE MIR -72 136 49 2023 142 0 4 chr3 22731607 22731928 -195305230 - AluJb SINE Alu 0 324 5 2274 111 10 0 chr3 22731938 22732244 -195304914 - AluSg SINE Alu -1 309 1 741 98 80 0 chr3 22732250 22732362 -195304796 - 5S rRNA rRNA 0 121 1 707 180 0 0 chr3 22732365 22732487 -195304671 - FLAM_C SINE Alu -16 127 6 192 311 0 16 chr3 22732488 22732549 -195304609 - MER5A DNA MER1_type -114 75 16 705 179 87 0 chr3 22732573 22732746 -195304412 + MER5A DNA MER1_type 2 189 0 334 172 118 21 chr3 22732761 22732854 -195304304 - MER5B DNA MER1_type -5 173 72 268 82 20 20 chr3 22732870 22732919 -195304239 + (TTC)n Simple_repeat Simple_repeat 1 49 0 412 326 28 22 chr3 22733429 22733610 -195303548 + MIR SINE MIR 7 188 -74 885 279 134 53 chr3 22734081 22734716 -195302442 - MER115 DNA AcHobo -6 687 2 2139 112 3 0 chr3 22734784 22735109 -195302049 - AluSp SINE Alu 0 313 1 318 320 20 0 chr3 22735207 22735307 -195301851 - MIR SINE MIR -10 252 151 329 301 0 11 chr3 22735876 22735969 -195301189 + MIR SINE MIR 56 147 -61 1124 126 0 88 chr3 22736061 22736204 -195300954 - L1MA4 LINE L1 0 6300 6185 2021 118 35 0 chr3 22736204 22736492 -195300666 + AluSx SINE Alu 1 298 -14 1124 126 0 88 chr3 22736492 22736587 -195300571 - L1MA4 LINE L1 -115 6185 6083 2009 142 3 6 chr3 22736640 22736951 -195300207 + AluSq SINE Alu 2 311 -2 210 118 0 0 chr3 22736951 22736985 -195300173 + (GGAGAA)n Simple_repeat Simple_repeat 1 34 0 621 270 93 17 chr3 22736985 22737274 -195299884 - MER113 DNA MER1_type? -149 372 62 1934 201 66 9 chr3 22737277 22737715 -195299443 - MLT1C LTR MaLR -4 463 1 2167 117 0 0 chr3 22738056 22738356 -195298802 + AluSx SINE Alu 1 300 -12 263 320 103 26 chr3 22738564 22738758 -195298400 + L2 LINE L2 2852 3060 -212 495 244 106 19 chr3 22738805 22738965 -195298193 - MER5B DNA MER1_type -3 175 2 2268 108 0 0 chr3 22738983 22739280 -195297878 + AluSx SINE Alu 1 297 -15 463 258 94 103 chr3 22739296 22739450 -195297708 + MER46C DNA MER2_type 10 164 -174 790 161 0 29 chr3 22739450 22739587 -195297571 - FLAM_C SINE Alu 0 133 1 463 258 94 103 chr3 22739587 22739761 -195297397 + MER46C DNA MER2_type 164 335 -3 489 328 74 4 chr3 22739776 22740005 -195297153 - MIR SINE MIR -1 261 17 252 256 207 0 chr3 22740514 22740596 -195296562 + MLT1L LTR MaLR 71 169 -380 435 75 0 0 chr3 22740640 22740693 -195296465 - AluSq SINE Alu -138 175 123 379 271 29 24 chr3 22740731 22740901 -195296257 + MLT1H LTR MaLR 378 548 -1 248 241 190 0 chr3 22740914 22740993 -195296165 + MIR SINE MIR 162 255 -7 395 312 68 30 chr3 22741247 22741510 -195295648 - L2 LINE L2 -1189 2125 1853 264 342 17 17 chr3 22741801 22741918 -195295240 + MIR SINE MIR 67 183 -79 2122 113 3 3 chr3 22742034 22742336 -195294822 + AluSg SINE Alu 1 302 -8 410 271 256 0 chr3 22742485 22742618 -195294540 - MIR SINE MIR -65 197 31 2135 125 0 7 chr3 22742741 22743045 -195294113 - AluSx SINE Alu -10 302 1 193 262 75 47 chr3 22744486 22744593 -195292565 + L3b LINE CR1 1349 1458 -125 209 283 19 0 chr3 22745111 22745164 -195291994 + MIR SINE MIR 93 146 -62 381 252 19 9 chr3 22745379 22745486 -195291672 + MLT1L LTR MaLR 167 274 -341 258 227 0 0 chr3 22745577 22745652 -195291506 + (TG)n Simple_repeat Simple_repeat 2 76 0 296 289 67 10 chr3 22745664 22745768 -195291390 - L2 LINE L2 -438 2876 2767 227 362 73 37 chr3 22745956 22746174 -195290984 - L3 LINE CR1 -132 1445 1220 806 219 92 22 chr3 22746691 22746919 -195290239 + MIR SINE MIR 13 256 -6 1636 188 0 10 chr3 22746920 22747218 -195289940 - AluJo SINE Alu -17 295 1 765 153 40 0 chr3 22747218 22747342 -195289816 - AluJo SINE Alu -177 135 7 1894 136 3 11 chr3 22747543 22747830 -195289328 + AluJb SINE Alu 6 290 -22 567 262 8 2 chr3 22748438 22748593 -195288565 - MIR SINE MIR -61 147 34 208 289 111 52 chr3 22749173 22749308 -195287850 + MIR SINE MIR 84 226 -36 279 54 0 0 chr3 22749373 22749410 -195287748 + (TG)n Simple_repeat Simple_repeat 1 37 0 382 284 91 41 chr3 22749976 22750198 -195286960 + MIR SINE MIR 13 256 -6 294 327 30 0 chr3 22750652 22750753 -195286405 + MIR3 SINE MIR 101 204 -4 302 96 0 19 chr3 22753224 22753276 -195283882 + (CA)n Simple_repeat Simple_repeat 2 52 0 192 321 28 37 chr3 22753644 22753753 -195283405 + MIR3 SINE MIR 81 188 -20 232 307 145 11 chr3 22753843 22754022 -195283136 - L3 LINE CR1 -199 1378 1176 1319 152 74 16 chr3 22754463 22754707 -195282451 + AluJo SINE Alu 25 282 -30 251 307 0 0 chr3 22754723 22754798 -195282360 + Charlie8 DNA MER1_type 118 192 -2225 285 333 0 0 chr3 22756445 22756520 -195280638 - MIR SINE MIR -65 143 69 368 316 170 19 chr3 22756916 22757393 -195279765 + L2 LINE L2 2709 3271 -1 396 292 11 0 chr3 22758290 22758379 -195278779 - MIR SINE MIR -56 152 63 364 333 33 22 chr3 22758923 22759103 -195278055 + L2 LINE L2 2882 3063 -209 364 299 163 45 chr3 22759845 22760162 -195276996 + L1M4 LINE L1 5102 5428 -743 321 364 45 45 chr3 22761453 22761739 -195275419 + L2 LINE L2 2986 3271 -1 202 216 0 59 chr3 22761774 22761825 -195275333 + MIR3 SINE MIR 113 160 -48 261 258 192 8 chr3 22762845 22762965 -195274193 + MIR SINE MIR 65 206 -56 2099 135 0 0 chr3 22763085 22763382 -195273776 + AluSx SINE Alu 1 297 -15 453 276 105 17 chr3 22763674 22763855 -195273303 + MIR SINE MIR 12 208 -54 734 169 12 41 chr3 22763862 22764034 -195273124 + L1MB3 LINE L1 5982 6148 -35 245 330 179 9 chr3 22764268 22764374 -195272784 + MIR SINE MIR 30 153 -55 336 238 0 59 chr3 22766899 22767000 -195270158 + MIR3 SINE MIR 99 193 -15 207 0 0 0 chr3 22767264 22767287 -195269871 + (A)n Simple_repeat Simple_repeat 1 23 0 218 271 0 57 chr3 22769698 22769768 -195267390 + L2 LINE L2 3248 3313 0 278 293 181 33 chr3 22770780 22770995 -195266163 + MIR SINE MIR 7 253 -9 491 252 103 28 chr3 22771970 22772125 -195265033 + MIR SINE MIR 5 171 -91 2285 91 7 10 chr3 22772125 22772433 -195264725 - AluSx SINE Alu 0 312 6 491 252 103 28 chr3 22772433 22772527 -195264631 + MIR SINE MIR 171 257 -5 601 227 88 31 chr3 22772720 22772928 -195264230 + MIR SINE MIR 31 248 -14 210 259 176 0 chr3 22773382 22773467 -195263691 - MIR SINE MIR -123 139 40 217 283 11 54 chr3 22773589 22773681 -195263477 - MIR3 SINE MIR -31 177 90 728 272 31 10 chr3 22773911 22774106 -195263052 - MIR SINE MIR -5 257 59 328 364 32 13 chr3 22774194 22774348 -195262810 + MIR3 SINE MIR 38 194 -14 182 152 0 0 chr3 22774435 22774468 -195262690 + MIR SINE MIR 114 146 -62 609 312 45 5 chr3 22775029 22775250 -195261908 - MIR SINE MIR -5 257 28 608 247 82 76 chr3 22775311 22775713 -195261445 + MER4C LTR ERV1 1 307 -158 1831 156 14 3 chr3 22775713 22776002 -195261156 - AluJb SINE Alu -20 292 1 608 247 82 76 chr3 22776002 22776162 -195260996 + MER4C LTR ERV1 307 465 0 285 296 112 24 chr3 22776660 22776785 -195260373 - MIR3 SINE MIR -63 145 10 690 289 31 4 chr3 22777002 22777227 -195259931 + MIR SINE MIR 3 229 -33 216 209 0 0 chr3 22777316 22777359 -195259799 - MIR SINE MIR -69 139 97 1051 275 39 46 chr3 22777888 22778277 -195258881 + L2 LINE L2 2926 3311 -2 847 163 30 48 chr3 22778360 22778526 -195258632 + FRAM SINE Alu 4 166 0 327 219 270 15 chr3 22778540 22778677 -195258481 - MIR SINE MIR -6 256 85 316 192 14 27 chr3 22778658 22778731 -195258427 + MIR SINE MIR 85 150 -58 * 183 320 247 0 chr3 22779746 22779843 -195257315 - MER5A DNA MER1_type 0 189 69 460 235 117 66 chr3 22780028 22780224 -195256934 - MER63A DNA MER1_type -2 208 3 239 357 107 9 chr3 22780514 22780626 -195256532 + MIR3 SINE MIR 15 137 -71 345 240 141 5 chr3 22780631 22780763 -195256395 + MIR SINE MIR 3 145 -63 180 394 21 11 chr3 22780823 22780917 -195256241 + MIR SINE MIR 49 143 -65 264 160 60 0 chr3 22781669 22781719 -195255439 + MIR SINE MIR 111 163 -99 21 0 0 0 chr3 22781835 22781856 -195255302 + AT_rich Low_complexity Low_complexity 1 21 0 450 248 124 0 chr3 22781893 22782014 -195255144 + L2 LINE L2 3178 3313 0 442 274 117 20 chr3 22782226 22782423 -195254735 - MIR SINE MIR -46 216 1 649 296 71 10 chr3 22783259 22783567 -195253591 + L1MC4a LINE L1 5613 5939 -1869 314 319 145 6 chr3 22784130 22784296 -195252862 + L2 LINE L2 2567 2755 -559 946 265 137 32 chr3 22784436 22784874 -195252284 + L2 LINE L2 2830 3313 0 274 299 0 0 chr3 22784872 22784949 -195252209 - MIR SINE MIR -112 150 74 * 211 212 82 59 chr3 22785948 22786033 -195251125 + MIR SINE MIR 42 128 -134 227 278 19 74 chr3 22786095 22786203 -195250955 - MIR SINE MIR -46 162 57 350 298 133 11 chr3 22786904 22787092 -195250066 + L2 LINE L2 2828 3038 -234 200 220 60 0 chr3 22787084 22787134 -195250024 - MIR SINE MIR -60 148 96 * 555 297 65 12 chr3 22787287 22787533 -195249625 - L2 LINE L2 -631 2683 2425 2214 101 0 0 chr3 22788368 22788682 -195248476 + AluSc SINE Alu 1 314 0 321 279 143 14 chr3 22788726 22788866 -195248292 - MIR SINE MIR -78 184 27 1075 268 80 31 chr3 22789716 22790173 -195246985 + MLT1H LTR MaLR 28 549 0 555 282 0 8 chr3 22790311 22790442 -195246716 - MIR SINE MIR -83 179 50 235 269 0 15 chr3 22790976 22791043 -195246115 + (TGGA)n Simple_repeat Simple_repeat 2 67 0 720 203 8 8 chr3 22791066 22791316 -195245842 + (TGGA)n Simple_repeat Simple_repeat 1 250 0 301 180 22 0 chr3 22791348 22791437 -195245721 + (TGGA)n Simple_repeat Simple_repeat 3 93 0 561 336 94 8 chr3 22791598 22791833 -195245325 - MIR SINE MIR -6 256 2 2573 170 43 2 chr3 22791849 22792291 -195244867 - L1PA16 LINE L1 -3 6163 5704 217 234 0 0 chr3 22792485 22792532 -195244626 + L2 LINE L2 3267 3313 0 2515 58 3 0 chr3 22792968 22793277 -195243881 - AluY SINE Alu -1 310 1 358 273 79 42 chr3 22794040 22794256 -195242902 - MER113 DNA MER1_type? -295 226 3 235 225 14 42 chr3 22794266 22794337 -195242821 - MIR SINE MIR -113 149 81 337 204 36 80 chr3 22795510 22795647 -195241511 + LTR33 LTR ERVL 17 147 -374 236 234 0 0 chr3 22796041 22796091 -195241067 + MIR SINE MIR 108 152 -56 462 259 89 51 chr3 22796149 22796385 -195240773 + MER102a DNA MER1_type 77 321 -9 479 309 24 24 chr3 22796387 22796552 -195240606 + L2 LINE L2 3118 3282 -31 255 349 83 23 chr3 22797177 22797395 -195239763 - L3 LINE CR1 -138 1439 1209 515 320 95 16 chr3 22797673 22798061 -195239097 + L2 LINE L2 2533 2951 -363 611 286 25 12 chr3 22798178 22798339 -195238819 + MIR SINE MIR 85 247 -15 185 262 71 85 chr3 22798407 22798548 -195238610 - MIR SINE MIR -96 166 28 214 308 58 64 chr3 22799065 22799221 -195237937 - MIR SINE MIR -26 236 82 422 247 201 31 chr3 22799991 22800185 -195236973 + MIR SINE MIR 30 256 -6 225 225 42 28 chr3 22800228 22800299 -195236859 + AluSc SINE Alu 89 160 -139 239 0 32 0 chr3 22800442 22800473 -195236685 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 1364 178 19 45 chr3 22800499 22800808 -195236350 + L1MA8 LINE L1 5987 6287 -4 1595 116 0 0 chr3 22800811 22801027 -195236131 + AluJb SINE Alu 85 300 -12 323 316 49 85 chr3 22801054 22801301 -195235857 - MIR SINE MIR -14 248 11 283 255 113 0 chr3 22801563 22801669 -195235489 + MER117 DNA MER1_type 34 151 -46 405 0 0 0 chr3 22801703 22801748 -195235410 + (A)n Simple_repeat Simple_repeat 1 45 0 1582 203 0 10 chr3 22801785 22802095 -195235063 + AluJo SINE Alu 5 311 -1 347 252 58 29 chr3 22803022 22803125 -195234033 - MIR SINE MIR -67 141 36 266 261 189 9 chr3 22803771 22803882 -195233276 - L2 LINE L2 -31 3282 3152 190 161 0 0 chr3 22803909 22803940 -195233218 - L2 LINE L2 -260 3053 3023 405 224 296 31 chr3 22803941 22804137 -195233021 - MIR SINE MIR -1 261 14 2126 120 3 7 chr3 22804456 22804765 -195232393 - AluSx SINE Alu -4 308 1 256 310 14 0 chr3 22806284 22806355 -195230803 + MIR SINE MIR 80 151 -111 207 292 87 68 chr3 22806695 22806914 -195230244 + L2 LINE L2 2896 3118 -154 295 191 79 56 chr3 22807291 22807380 -195229778 - MIR3 SINE MIR -4 204 114 202 167 48 0 chr3 22807460 22807502 -195229656 - MIR SINE MIR -63 145 102 180 282 26 64 chr3 22808370 22808448 -195228710 + MIR SINE MIR 79 153 -109 454 286 28 21 chr3 22808510 22808672 -195228486 + MER5A DNA MER1_type 21 172 -6 424 230 119 16 chr3 22808976 22809102 -195228056 - MIR SINE MIR -117 145 7 582 260 19 13 chr3 22809706 22809860 -195227298 + MIR SINE MIR 106 260 -2 471 285 183 11 chr3 22810832 22811018 -195226140 + MIR SINE MIR 31 248 -14 304 355 26 33 chr3 22811903 22812055 -195225103 - MIR SINE MIR -61 201 51 237 269 161 46 chr3 22812082 22812212 -195224946 - MIR3 SINE MIR -27 181 37 298 209 9 109 chr3 22812984 22813094 -195224064 + MIR SINE MIR 47 145 -63 202 313 62 39 chr3 22813733 22813861 -195223297 + L2 LINE L2 2839 2969 -303 294 176 18 0 chr3 22814559 22814624 -195222534 - MIR SINE MIR -63 145 89 292 273 78 0 chr3 22814707 22814784 -195222374 + MIR3 SINE MIR 81 163 -45 225 296 70 0 chr3 22814854 22814925 -195222233 + L2 LINE L2 3238 3313 0 217 288 30 12 chr3 22815886 22815993 -195221165 - MIR SINE MIR -43 165 55 321 268 82 22 chr3 22816458 22816601 -195220557 + MIR SINE MIR 38 188 -60 362 278 49 94 chr3 22816724 22816969 -195220189 - MIR SINE MIR -12 250 17 346 325 110 51 chr3 22817212 22817357 -195219801 + L1MB2 LINE L1 5542 5677 -2131 710 216 0 0 chr3 22817357 22817496 -195219662 + L1MB2 LINE L1 6031 6169 -2 1886 146 24 0 chr3 22817500 22817794 -195219364 + AluJb SINE Alu 1 301 -11 346 325 110 51 chr3 22817794 22817880 -195219278 + L1MB2 LINE L1 5679 5792 -2016 1454 109 0 0 chr3 22817938 22818130 -195219028 - AluSx SINE Alu -117 195 4 333 347 20 14 chr3 22818640 22818787 -195218371 - MIR SINE MIR -101 161 14 208 217 113 82 chr3 22818878 22819022 -195218136 - MIR3 SINE MIR -68 140 2 614 305 94 14 chr3 22819387 22819600 -195217558 + MIR SINE MIR 33 262 0 675 235 53 114 chr3 22820367 22820532 -195216626 + L1MC4 LINE L1 7559 7732 -310 2365 70 0 3 chr3 22820532 22820834 -195216324 - AluY SINE Alu -10 301 1 675 235 53 114 chr3 22820834 22821054 -195216104 + L1MC4 LINE L1 7732 8010 -32 798 155 8 0 chr3 22821098 22821227 -195215931 - AluJo SINE Alu -176 136 7 1226 163 0 5 chr3 22821227 22821436 -195215722 + AluJb SINE Alu 89 296 -16 337 322 0 22 chr3 22822027 22822210 -195214948 + (CA)n Simple_repeat Simple_repeat 1 179 0 383 245 57 9 chr3 22823052 22823158 -195214000 - L2 LINE L2 -3 3310 3200 227 206 65 43 chr3 22823198 22823290 -195213868 + MER117 DNA MER1_type 88 181 -16 1722 159 10 23 chr3 22823464 22823765 -195213393 + AluJo SINE Alu 11 307 -5 880 295 90 30 chr3 22823854 22824288 -195212870 + MLT1K LTR MaLR 91 550 -38 27 0 0 0 chr3 22824328 22824355 -195212803 + AT_rich Low_complexity Low_complexity 1 27 0 187 305 122 53 chr3 22824399 22824530 -195212628 + MIR3 SINE MIR 55 194 -14 758 247 23 0 chr3 22824614 22824788 -195212370 - MER5A DNA MER1_type -6 183 6 349 167 157 46 chr3 22825371 22825479 -195211679 + MIR SINE MIR 77 196 -66 391 250 11 0 chr3 22825542 22825630 -195211528 + MER5A DNA MER1_type 9 97 -92 1529 150 75 4 chr3 22825630 22825884 -195211274 - AluJb SINE Alu -38 274 3 394 264 132 14 chr3 22826352 22826496 -195210662 + L2 LINE L2 3140 3300 -13 192 40 0 0 chr3 22826498 22826523 -195210635 + (TGGA)n Simple_repeat Simple_repeat 3 27 0 229 236 0 18 chr3 22826804 22826859 -195210299 - L2 LINE L2 -17 3296 3243 * 395 319 118 12 chr3 22826848 22827161 -195209997 - L2 LINE L2 -219 3053 2718 2103 106 31 0 chr3 22828086 22828378 -195208780 - AluSg SINE Alu -9 301 1 224 197 15 136 chr3 22828424 22828490 -195208668 + MIR3 SINE MIR 109 166 -42 253 284 102 0 chr3 22828636 22828724 -195208434 + L2 LINE L2 3162 3258 -14 2442 67 0 6 chr3 22829176 22829488 -195207670 + AluY SINE Alu 1 310 -1 374 338 50 6 chr3 22829515 22829675 -195207483 + L1M4 LINE L1 2876 3042 -3104 2054 106 0 0 chr3 22829678 22829952 -195207206 + AluSx SINE Alu 30 303 -9 2165 186 61 26 chr3 22830088 22830478 -195206680 + L1ME2 LINE L1 5574 5992 -172 1678 170 20 13 chr3 22830478 22830784 -195206374 + AluJb SINE Alu 1 308 -4 2165 186 61 26 chr3 22830784 22830963 -195206195 + L1ME2 LINE L1 5992 6163 -1 1751 137 0 0 chr3 22830983 22831239 -195205919 + AluJb SINE Alu 50 305 -7 341 242 14 67 chr3 22831239 22831379 -195205779 - MER5A DNA MER1_type -44 139 9 746 136 27 0 chr3 22831979 22832089 -195205069 + FLAM_C SINE Alu 6 118 -25 184 335 84 61 chr3 22832115 22832458 -195204700 + L2 LINE L2 2836 3186 -86 227 318 37 72 chr3 22833556 22833757 -195203401 - MIR SINE MIR -66 196 3 * 304 198 176 0 chr3 22833757 22833838 -195203320 - MIR3 SINE MIR -60 148 52 226 276 0 20 chr3 22834912 22835010 -195202148 + (CA)n Simple_repeat Simple_repeat 1 96 0 423 0 0 0 chr3 22835159 22835206 -195201952 + (CA)n Simple_repeat Simple_repeat 1 47 0 38 0 0 0 chr3 22835715 22835753 -195201405 + GC_rich Low_complexity Low_complexity 1 38 0 228 200 0 0 chr3 22835776 22835826 -195201332 + (CA)n Simple_repeat Simple_repeat 2 51 0 708 277 55 18 chr3 22836178 22836398 -195200760 + MIR SINE MIR 34 261 -1 204 40 0 0 chr3 22836544 22836569 -195200589 + (TC)n Simple_repeat Simple_repeat 2 26 0 2309 75 23 0 chr3 22836639 22836945 -195200213 + AluSq SINE Alu 1 313 0 335 260 60 10 chr3 22837851 22837951 -195199207 + L2 LINE L2 3201 3305 -8 2227 100 3 0 chr3 22837965 22838265 -195198893 - AluSp SINE Alu -12 301 1 973 267 4 4 chr3 22838266 22838506 -195198652 - MIR SINE MIR -5 257 18 372 247 79 18 chr3 22838693 22838857 -195198301 + MIR SINE MIR 15 183 -63 338 281 30 30 chr3 22838861 22838996 -195198162 + MER102a DNA MER1_type 2 136 -194 1112 188 0 20 chr3 22838996 22839220 -195197938 + AluJb SINE Alu 85 304 0 511 261 59 15 chr3 22839220 22839423 -195197735 + MER102a DNA MER1_type 119 330 0 577 332 5 5 chr3 22840114 22840304 -195196854 + MIR SINE MIR 45 234 -28 180 222 37 49 chr3 22840354 22840435 -195196723 + L2 LINE L2 2910 2989 -283 684 194 14 58 chr3 22840902 22841041 -195196117 - FLAM_A SINE Alu 0 133 1 574 241 85 67 chr3 22841044 22841408 -195195750 + L1ME2 LINE L1 5579 5943 -221 204 171 37 0 chr3 22841908 22841990 -195195168 + (TCTCTG)n Simple_repeat Simple_repeat 2 86 0 615 273 43 0 chr3 22842917 22843104 -195194054 + MIR SINE MIR 49 243 -19 515 301 108 34 chr3 22844741 22844815 -195192343 + L1MEd LINE L1 748 815 -1675 1758 118 0 87 chr3 22844815 22845147 -195192011 + AluSq SINE Alu 6 308 -5 515 301 108 34 chr3 22845147 22845168 -195191990 + L1MEd LINE L1 815 833 -1657 1214 135 101 10 chr3 22845168 22845376 -195191782 + MER30 DNA MER1_type 4 230 0 515 301 108 34 chr3 22845376 22845442 -195191716 + L1MEd LINE L1 833 893 -1597 216 0 0 0 chr3 22845442 22845466 -195191692 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 515 301 108 34 chr3 22845466 22846033 -195191125 + L1MEd LINE L1 893 1628 -862 1453 171 131 17 chr3 22846400 22846751 -195190407 + L1MB7 LINE L1 5778 6168 -16 249 292 75 8 chr3 22846787 22846907 -195190251 + L1MC4 LINE L1 7609 7736 -306 324 241 319 7 chr3 22847579 22847720 -195189438 - MIR SINE MIR -56 206 22 1836 183 70 30 chr3 22848033 22848558 -195188600 - Charlie1a DNA MER1_type 0 1455 910 * 2499 217 99 10 chr3 22848553 22849028 -195188130 - Charlie1a DNA MER1_type -1976 785 229 1705 77 81 8 chr3 22849028 22849276 -195187882 - AluY SINE Alu -45 266 1 2499 217 99 10 chr3 22849276 22849488 -195187670 - Charlie1a DNA MER1_type -2532 229 37 1888 94 0 0 chr3 22849527 22849771 -195187387 - AluSg SINE Alu -66 244 1 27 49 0 0 chr3 22850143 22850184 -195186974 + AT_rich Low_complexity Low_complexity 1 41 0 660 158 298 0 chr3 22850188 22850346 -195186812 - MER2 DNA MER2_type -140 205 1 883 250 14 0 chr3 22851756 22851964 -195185194 - MIR SINE MIR -1 261 51 616 305 51 0 chr3 22852466 22852663 -195184495 - MLT1K LTR MaLR -92 496 290 280 281 135 0 chr3 22852890 22852986 -195184172 + MIR3 SINE MIR 48 156 -52 296 323 89 0 chr3 22853290 22853414 -195183744 - MIR SINE MIR -12 250 116 943 221 23 5 chr3 22853455 22853672 -195183486 - MIR SINE MIR -12 250 30 398 211 9 0 chr3 22854470 22854579 -195182579 + GA-rich Low_complexity Low_complexity 2 111 0 898 95 0 0 chr3 22854971 22855097 -195182061 - L1MC/D LINE L1 -668 5665 5540 975 254 29 32 chr3 22855348 22855402 -195181756 - MER113 DNA MER1_type? -155 366 313 5610 126 51 5 chr3 22855402 22855489 -195181669 - L1MC1 LINE L1 -1 6332 6250 2882 129 19 2 chr3 22855489 22855908 -195181250 + MSTA LTR MaLR 1 426 -2 5610 126 51 5 chr3 22855908 22856664 -195180494 - L1MC1 LINE L1 -83 6250 5450 975 254 29 32 chr3 22856664 22856924 -195180234 - MER113 DNA MER1_type? -208 313 53 312 297 73 6 chr3 22857549 22857714 -195179444 + LTR16A1 LTR ERVL 193 368 -89 362 286 108 31 chr3 22857788 22858075 -195179083 - L2 LINE L2 -999 2315 2007 507 226 76 45 chr3 22859042 22859382 -195177776 - LTR23 LTR ERV1 -59 378 4 1481 240 66 33 chr3 22859418 22859905 -195177253 - MER90 LTR ERV1 -72 503 1 301 167 106 0 chr3 22860067 22860133 -195177025 - L1ME3 LINE L1 -66 6096 6024 259 289 133 15 chr3 22860178 22860313 -195176845 - L1ME3 LINE L1 -225 5941 5791 667 283 11 0 chr3 22860474 22860658 -195176500 + L1MC5 LINE L1 5053 5238 -908 1872 140 10 16 chr3 22860787 22861095 -195176063 + AluJo SINE Alu 1 306 -6 339 313 9 9 chr3 22861163 22861275 -195175883 - MIR SINE MIR -71 191 80 227 315 67 0 chr3 22861956 22862045 -195175113 + MIR SINE MIR 21 115 -147 227 309 209 0 chr3 22862196 22862306 -195174852 - L2 LINE L2 -2 3270 3138 213 350 111 20 chr3 22862726 22863023 -195174135 - L2 LINE L2 -29 3243 2920 894 284 108 27 chr3 22863221 22863664 -195173494 + L2 LINE L2 2830 3308 -5 323 346 44 6 chr3 22864258 22864440 -195172718 + L1MC5 LINE L1 5637 5825 -1983 256 312 46 28 chr3 22864768 22864877 -195172281 + MIR SINE MIR 35 145 -63 345 281 52 0 chr3 22864909 22865005 -195172153 + MER91C DNA MER1_type 38 138 -2 27 0 0 0 chr3 22865668 22865695 -195171463 + AT_rich Low_complexity Low_complexity 1 27 0 277 269 214 55 chr3 22866358 22866540 -195170618 - L2 LINE L2 0 3313 3103 1077 264 44 70 chr3 22866590 22867135 -195170023 + L1MC5 LINE L1 6681 7211 -750 655 250 124 59 chr3 22867305 22867749 -195169409 + L1MC5 LINE L1 7304 7776 -185 24 0 0 0 chr3 22867795 22867819 -195169339 + AT_rich Low_complexity Low_complexity 1 24 0 196 281 72 50 chr3 22867819 22867958 -195169200 - L2 LINE L2 -246 3067 2926 210 323 177 15 chr3 22868166 22868296 -195168862 - MER5B DNA MER1_type -27 151 1 228 252 24 41 chr3 22868559 22868682 -195168476 + C-rich Low_complexity Low_complexity 3 123 0 360 202 90 0 chr3 22868963 22869052 -195168106 + MIR3 SINE MIR 82 178 -30 288 0 0 0 chr3 22869174 22869206 -195167952 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 201 231 39 0 chr3 22869332 22869384 -195167774 - MIR SINE MIR -119 89 36 867 258 186 16 chr3 22869871 22870481 -195166677 - L2 LINE L2 -19 3294 2579 746 229 43 11 chr3 22870522 22870710 -195166448 - MIR SINE MIR -63 199 6 367 257 18 26 chr3 22871015 22871128 -195166030 + MIR SINE MIR 34 145 -117 258 154 0 108 chr3 22871467 22871532 -195165626 - MIR3 SINE MIR -41 167 110 286 250 60 12 chr3 22871778 22871862 -195165296 + L2 LINE L2 3184 3271 -1 626 224 202 22 chr3 22871913 22872361 -195164797 + L2 LINE L2 2736 3263 -50 196 307 80 0 chr3 22872370 22872458 -195164700 - L2 LINE L2 -35 3237 3143 536 240 74 29 chr3 22872513 22872688 -195164470 - MIR SINE MIR -58 204 22 252 0 0 0 chr3 22873632 22873660 -195163498 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 1965 146 0 7 chr3 22873671 22873980 -195163178 + AluJb SINE Alu 1 307 -5 250 196 39 0 chr3 22874155 22874206 -195162952 + (TGAG)n Simple_repeat Simple_repeat 4 56 0 337 296 15 44 chr3 22874454 22874589 -195162569 + MIR3 SINE MIR 15 145 -63 372 176 98 0 chr3 22875319 22875421 -195161737 - Charlie5 DNA MER1_type 0 2624 2513 3280 145 24 19 chr3 22875619 22876199 -195160959 - L1MB8 LINE L1 -5 6173 5591 226 224 61 20 chr3 22876303 22876401 -195160757 + (TTATA)n Simple_repeat Simple_repeat 4 105 0 1851 125 30 7 chr3 22876416 22876719 -195160439 - AluSx SINE Alu -2 310 1 200 31 62 0 chr3 22876777 22876809 -195160349 + (TTAA)n Simple_repeat Simple_repeat 2 35 0 312 282 51 32 chr3 22877383 22877539 -195159619 + MER113 DNA MER1_type? 249 407 -114 406 301 18 37 chr3 22877539 22877702 -195159456 - MER91B DNA MER1_type -27 163 4 251 196 20 0 chr3 22878122 22878173 -195158985 + MIR SINE MIR 72 123 -85 866 214 0 6 chr3 22878279 22878447 -195158711 - AluJb SINE Alu -1 311 145 339 270 7 15 chr3 22878680 22878817 -195158341 + C-rich Low_complexity Low_complexity 2 137 0 655 252 35 67 chr3 22878947 22879348 -195157810 - L1MEd LINE L1 -5173 946 559 672 295 73 58 chr3 22879404 22879801 -195157357 - L1MEd LINE L1 -5567 552 150 * 1222 246 41 52 chr3 22879798 22880111 -195157047 - L1M4 LINE L1 -1543 4603 4288 1813 97 8 0 chr3 22880111 22880370 -195156788 - L1MA2 LINE L1 0 6304 6044 781 122 0 0 chr3 22880371 22880478 -195156680 - U6 snRNA snRNA 0 107 1 1222 246 41 52 chr3 22880478 22880695 -195156463 - L1M4 LINE L1 -1857 4289 4077 248 265 51 20 chr3 22880680 22880778 -195156380 - L1MEd LINE L1 -5930 189 89 * 341 281 94 30 chr3 22880993 22881165 -195155993 - MIR SINE MIR -62 200 25 265 297 11 11 chr3 22881418 22881509 -195155649 + MIR SINE MIR 2 92 -170 996 197 69 5 chr3 22881792 22881995 -195155163 - MER20 DNA MER1_type -3 216 1 203 254 0 45 chr3 22882152 22882219 -195154939 + G-rich Low_complexity Low_complexity 2 65 0 1641 217 31 20 chr3 22882262 22882654 -195154504 - MLT1G LTR MaLR -173 417 22 1154 71 19 0 chr3 22883115 22883270 -195153888 + L1PA10 LINE L1 6011 6168 0 701 241 99 28 chr3 22883288 22883500 -195153658 + MIR SINE MIR 35 261 -1 438 242 31 0 chr3 22883902 22884030 -195153128 + Charlie7 DNA MER1_type 52 183 -2429 362 344 41 0 chr3 22884518 22884640 -195152518 - L2 LINE L2 0 3313 3187 323 265 0 0 chr3 22884645 22884724 -195152434 + MIR SINE MIR 74 145 -63 215 285 76 99 chr3 22884802 22884974 -195152184 - MIR3 SINE MIR -23 185 18 1433 266 88 79 chr3 22885454 22886136 -195151022 + L2 LINE L2 1040 1714 -1600 734 133 16 8 chr3 22886136 22886264 -195150894 - MER5A DNA MER1_type -31 158 30 1433 266 88 79 chr3 22886264 22886645 -195150513 + L2 LINE L2 1714 2090 -1224 1894 119 133 21 chr3 22886645 22886982 -195150176 - THE1C LTR MaLR 0 375 1 1433 266 88 79 chr3 22886982 22887255 -195149903 + L2 LINE L2 2090 2478 -836 2539 214 140 56 chr3 22887281 22887524 -195149634 - L1ME1 LINE L1 -6 6160 5939 1754 151 33 7 chr3 22887524 22887828 -195149330 - AluJb SINE Alu 0 312 1 2539 214 140 56 chr3 22887828 22887858 -195149300 - L1ME1 LINE L1 -227 5939 5913 731 144 0 0 chr3 22887858 22887962 -195149196 - U6 snRNA snRNA -3 104 1 2539 214 140 56 chr3 22887962 22888636 -195148522 - L1ME1 LINE L1 -253 5913 5166 1877 76 8 38 chr3 22888636 22888900 -195148258 - AluSq SINE Alu -3 310 55 592 333 24 5 chr3 22888901 22889114 -195148044 + MIR SINE MIR 35 251 -11 1985 199 34 16 chr3 22889267 22889606 -195147552 - L1ME1 LINE L1 0 6166 5816 3270 103 5 0 chr3 22889606 22890032 -195147126 + MSTC LTR MaLR 1 428 0 1985 199 34 16 chr3 22890032 22890140 -195147018 - L1ME1 LINE L1 -350 5816 5711 282 244 39 0 chr3 22890140 22890218 -195146940 + MLT1L LTR MaLR 434 514 -101 241 83 0 0 chr3 22890218 22890254 -195146904 - L1ME1 LINE L1 -533 5709 5674 1665 156 179 16 chr3 22890260 22890645 -195146513 - MER66A LTR ERV1 -4 474 27 800 189 7 0 chr3 22890652 22890805 -195146353 - L1ME1 LINE L1 -494 5672 5519 561 234 0 0 chr3 22890805 22890929 -195146229 + FLAM_C SINE Alu 10 133 -10 315 189 33 33 chr3 22891035 22891188 -195145970 + (CACAC)n Simple_repeat Simple_repeat 1 153 0 800 318 56 11 chr3 22891297 22891919 -195145239 + L1MEc LINE L1 1156 1710 -4505 535 311 77 35 chr3 22891920 22892180 -195144978 + L1MEc LINE L1 1859 2129 -4267 1685 175 38 9 chr3 22892206 22892521 -195144637 + MER2 DNA MER2_type 22 345 0 443 212 40 30 chr3 22892523 22892622 -195144536 + L1MEc LINE L1 2131 2230 -4166 230 348 65 0 chr3 22892629 22892721 -195144437 - L2 LINE L2 -4 3268 3171 273 350 83 6 chr3 22892777 22892957 -195144201 - L2 LINE L2 -214 3058 2865 296 186 17 0 chr3 22893071 22893130 -195144028 - MIR3 SINE MIR -28 180 121 283 361 35 18 chr3 22893167 22893336 -195143822 - L2 LINE L2 -590 2724 2553 811 104 37 8 chr3 22893413 22893547 -195143611 - MER72 LTR ERV1 -3 719 582 219 309 120 17 chr3 22893822 22893980 -195143178 - MIR SINE MIR -58 150 1 294 296 154 62 chr3 22894217 22894541 -195142617 - L2 LINE L2 -5 3267 2914 380 289 66 36 chr3 22894604 22894770 -195142388 + Charlie8 DNA MER1_type 1 171 -2246 706 310 92 41 chr3 22894834 22895115 -195142043 - L2 LINE L2 0 3313 3007 1508 159 12 16 chr3 22895115 22895373 -195141785 - AluJb SINE Alu -55 257 1 706 310 92 41 chr3 22895373 22895459 -195141699 - L2 LINE L2 -306 3007 2927 23 0 0 0 chr3 22895889 22895912 -195141246 + AT_rich Low_complexity Low_complexity 1 23 0 261 109 0 0 chr3 22896430 22896476 -195140682 + (CA)n Simple_repeat Simple_repeat 1 46 0 207 100 0 0 chr3 22897123 22897153 -195140005 + (TCCC)n Simple_repeat Simple_repeat 1 30 0 275 239 42 0 chr3 22897514 22897585 -195139573 + L2 LINE L2 2976 3049 -223 1363 293 81 16 chr3 22897600 22898095 -195139063 - MLT1K LTR MaLR 0 588 62 403 302 79 25 chr3 22898161 22898363 -195138795 + L2 LINE L2 3100 3312 -1 188 292 142 17 chr3 22898690 22898810 -195138348 - MIR SINE MIR -75 187 53 375 267 25 8 chr3 22898819 22898939 -195138219 + MIR SINE MIR 39 160 -102 288 0 0 0 chr3 22899715 22899747 -195137411 + (CA)n Simple_repeat Simple_repeat 2 33 0 2258 100 3 0 chr3 22900474 22900784 -195136374 - AluSq SINE Alu -2 311 1 201 263 224 0 chr3 22900927 22901003 -195136155 + MIR SINE MIR 22 114 -148 291 249 59 35 chr3 22901837 22902006 -195135152 + Charlie7 DNA MER1_type 2434 2606 -6 264 305 102 20 chr3 22902080 22902215 -195134943 - MIR SINE MIR -8 254 95 1887 98 0 29 chr3 22902215 22902492 -195134666 - AluSx SINE Alu 0 312 44 264 305 102 20 chr3 22902492 22902575 -195134583 - MIR SINE MIR -167 95 20 299 229 119 28 chr3 22902809 22902918 -195134240 - L1ME4a LINE L1 -41 6080 5962 272 349 96 29 chr3 22902929 22903138 -195134020 - L1ME4a LINE L1 -200 5921 5699 902 268 158 9 chr3 22903480 22903961 -195133197 - L2 LINE L2 -1 3312 2734 2016 127 7 0 chr3 22904638 22904938 -195132220 + AluSg SINE Alu 1 302 -8 223 225 138 25 chr3 22905219 22905299 -195131859 + MIR SINE MIR 33 121 -87 326 289 10 0 chr3 22905444 22905541 -195131617 - MIR SINE MIR -110 152 55 452 265 73 20 chr3 22905819 22905970 -195131188 + MIR SINE MIR 70 228 -34 199 333 8 3 chr3 22906476 22906600 -195130558 + L3 LINE CR1 1390 1554 -23 263 226 9 26 chr3 22906895 22906977 -195130181 + MIR SINE MIR 107 185 -77 655 305 205 18 chr3 22906982 22907362 -195129796 - L2 LINE L2 0 3313 2863 233 278 166 13 chr3 22907726 22907877 -195129281 - L1ME LINE L1 -277 5887 5714 225 261 148 35 chr3 22907993 22908108 -195129050 - L1MC4 LINE L1 -589 7453 7326 515 274 18 30 chr3 22908130 22908294 -195128864 - L2 LINE L2 -561 2753 2592 181 170 128 0 chr3 22908336 22908383 -195128775 + L2 LINE L2 3214 3266 -6 1992 209 95 22 chr3 22908918 22909411 -195127747 - MLT1F LTR MaLR -2 540 12 317 250 104 10 chr3 22909472 22909568 -195127590 - L2 LINE L2 -18 3254 3150 208 240 53 13 chr3 22909796 22909871 -195127287 - L2 LINE L2 -210 3062 2985 532 211 63 28 chr3 22910578 22910720 -195126438 - MIR SINE MIR -32 230 84 2125 114 0 0 chr3 22910878 22911176 -195125982 + AluSx SINE Alu 1 298 -14 383 286 20 20 chr3 22911315 22911462 -195125696 - L1ME3A LINE L1 -230 5940 5794 250 312 0 0 chr3 22911531 22911608 -195125550 - MIR SINE MIR -118 144 68 215 271 17 0 chr3 22911945 22912004 -195125154 + MIR SINE MIR 111 170 -92 202 373 0 0 chr3 22912066 22912133 -195125025 - L2 LINE L2 0 3272 3206 295 279 31 31 chr3 22912946 22913075 -195124083 + MIR SINE MIR 18 146 -116 243 133 0 0 chr3 22913278 22913323 -195123835 + (GA)n Simple_repeat Simple_repeat 2 46 0 206 125 0 25 chr3 22914172 22914212 -195122946 + (GA)n Simple_repeat Simple_repeat 2 40 0 271 330 29 0 chr3 22914576 22914679 -195122479 + MIR SINE MIR 63 168 -94 * 651 301 10 10 chr3 22914675 22914868 -195122290 + MIR SINE MIR 10 202 -60 344 268 24 32 chr3 22915019 22915142 -195122016 - MIR SINE MIR -67 141 20 402 298 16 8 chr3 22915611 22915735 -195121423 - MIR SINE MIR -63 199 75 240 172 86 52 chr3 22916087 22916145 -195121013 - MIR SINE MIR -100 162 103 459 344 85 31 chr3 22916456 22916680 -195120478 - MIR SINE MIR -20 242 7 522 300 64 5 chr3 22916699 22916716 -195120442 + MER113 DNA MER1_type? 101 116 -405 1240 215 6 93 chr3 22916716 22917037 -195120121 - AluJo SINE Alu -8 294 2 522 300 64 5 chr3 22917037 22917239 -195119919 + MER113 DNA MER1_type? 116 333 -188 190 261 201 30 chr3 22917351 22917485 -195119673 - MIR SINE MIR -67 195 39 327 196 43 11 chr3 22917658 22917750 -195119408 - L2 LINE L2 -202 3070 2976 57 16 0 0 chr3 22917949 22918013 -195119145 + AT_rich Low_complexity Low_complexity 1 64 0 351 319 77 6 chr3 22918053 22918222 -195118936 - MIR3 SINE MIR -22 186 6 512 307 92 9 chr3 22918334 22918552 -195118606 - MIR SINE MIR 0 262 27 260 342 66 7 chr3 22919330 22919482 -195117676 + MER117 DNA MER1_type 32 192 -5 219 69 0 0 chr3 22919492 22919521 -195117637 + (TCCCC)n Simple_repeat Simple_repeat 1 29 0 553 292 108 20 chr3 22919527 22920154 -195117004 + L2 LINE L2 2462 3142 -171 296 275 64 18 chr3 22920348 22920457 -195116701 + L2 LINE L2 2926 3039 -233 276 362 21 0 chr3 22920495 22920589 -195116569 + L2 LINE L2 3168 3263 -9 934 253 154 7 chr3 22921648 22921933 -195115225 + MLT1G1 LTR MaLR 2 328 -267 306 321 102 27 chr3 22921936 22922346 -195114812 - L2 LINE L2 -255 3017 2560 496 274 41 7 chr3 22922670 22922816 -195114342 - MIR SINE MIR -60 202 52 241 300 0 0 chr3 22923639 22923709 -195113449 + MIR SINE MIR 81 150 -58 313 256 12 0 chr3 22923992 22924074 -195113084 + MER5B DNA MER1_type 89 171 -7 425 243 44 29 chr3 22924077 22924213 -195112945 + MIR SINE MIR 14 151 -111 2212 93 3 6 chr3 22924376 22924687 -195112471 + AluY SINE Alu 1 310 -1 1048 262 28 0 chr3 22925084 22925332 -195111826 - MIR SINE MIR -7 255 1 334 290 73 8 chr3 22925385 22925509 -195111649 - MIR SINE MIR -123 139 8 283 314 78 10 chr3 22925536 22925638 -195111520 - L2 LINE L2 0 3313 3205 302 241 74 31 chr3 22925967 22926106 -195111052 + MIR3 SINE MIR 5 154 -62 185 250 141 0 chr3 22926260 22926324 -195110834 + L3 LINE CR1 572 644 -933 186 266 53 53 chr3 22926431 22926544 -195110614 + L2 LINE L2 2862 2974 -298 471 329 0 0 chr3 22927649 22927786 -195109372 + MIR SINE MIR 37 173 -89 210 260 178 47 chr3 22928104 22928273 -195108885 + MIR3 SINE MIR 7 197 -11 2004 110 0 21 chr3 22929081 22929402 -195107756 + AluSx SINE Alu 1 315 0 214 364 16 8 chr3 22929422 22929543 -195107615 + (CCCTAG)n Simple_repeat Simple_repeat 2 123 0 2514 40 0 0 chr3 22930197 22930495 -195106663 - AluY SINE Alu -13 298 1 299 143 95 0 chr3 22930701 22930764 -195106394 + MIR3 SINE MIR 114 182 -26 421 353 45 18 chr3 22931091 22931312 -195105846 + MIR SINE MIR 20 246 -16 1760 175 0 13 chr3 22931571 22931862 -195105296 + AluJo SINE Alu 1 289 -23 243 0 0 0 chr3 22931862 22931889 -195105269 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 1760 175 0 13 chr3 22931889 22931905 -195105253 + AluJo SINE Alu 289 304 -8 362 271 42 0 chr3 22932204 22932300 -195104858 - MIR SINE MIR -119 143 44 1740 128 62 24 chr3 22932463 22932751 -195104407 - AluSx SINE Alu -13 299 1 331 305 34 17 chr3 22933273 22933391 -195103767 + MIR SINE MIR 33 152 -110 1610 125 23 4 chr3 22933998 22934103 -195103055 + AluSx SINE Alu 23 124 -192 441 0 0 0 chr3 22934103 22934152 -195103006 + (CA)n Simple_repeat Simple_repeat 2 50 0 1610 125 23 4 chr3 22934152 22934335 -195102823 + AluSx SINE Alu 124 316 0 195 258 0 0 chr3 22935069 22935131 -195102027 + L2 LINE L2 2908 2969 -303 605 268 89 0 chr3 22935147 22935304 -195101854 + MIR SINE MIR 90 260 -2 280 317 14 0 chr3 22935562 22935681 -195101477 - MIR SINE MIR -62 146 23 233 373 81 0 chr3 22935708 22935893 -195101265 - L2 LINE L2 -49 3223 3024 263 283 19 0 chr3 22936372 22936470 -195100688 + MIR SINE MIR 69 146 -62 2109 90 7 3 chr3 22936781 22937070 -195100088 + AluSg SINE Alu 1 290 -20 1535 249 130 39 chr3 22937084 22937122 -195100036 - L1ME1 LINE L1 -4 6162 6129 2037 149 41 39 chr3 22937122 22937511 -195099647 - MLT1B LTR MaLR 0 390 1 1535 249 130 39 chr3 22937511 22938261 -195098897 - L1ME1 LINE L1 -37 6129 5448 2867 138 21 29 chr3 22938261 22938776 -195098382 - L1MB3 LINE L1 -7 6176 5666 1620 183 14 3 chr3 22938776 22939071 -195098087 - AluJb SINE Alu -12 300 3 1535 249 130 39 chr3 22939071 22939138 -195098020 - L1ME1 LINE L1 -717 5449 5259 204 158 0 0 chr3 22939575 22939613 -195097545 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 567 200 73 0 chr3 22940007 22940157 -195097001 + L2 LINE L2 2900 3060 -253 270 245 113 50 chr3 22940357 22940516 -195096642 - MIR3 SINE MIR -37 171 3 400 294 9 0 chr3 22940777 22940886 -195096272 - MER81 DNA DNA -3 111 2 238 245 219 26 chr3 22941903 22942054 -195095104 + MER5A DNA MER1_type 4 183 -6 224 257 148 30 chr3 22942246 22942347 -195094811 + L2 LINE L2 3141 3253 -19 321 326 93 58 chr3 22943436 22943780 -195093378 - L2 LINE L2 -3 3269 2914 1870 247 112 100 chr3 22943815 22943911 -195093247 + MER45C DNA AcHobo 49 142 -1439 1600 188 11 0 chr3 22943911 22944198 -195092960 - AluJb SINE Alu -22 290 1 273 98 0 0 chr3 22944204 22944245 -195092913 + (TG)n Simple_repeat Simple_repeat 2 42 0 1987 110 3 0 chr3 22944245 22944527 -195092631 - AluY SINE Alu -28 283 1 1870 247 112 100 chr3 22944527 22945246 -195091912 + MER45C DNA AcHobo 146 886 -695 1780 163 30 0 chr3 22945246 22945547 -195091611 + AluJb SINE Alu 1 310 -2 1870 247 112 100 chr3 22945547 22945616 -195091542 + MER45C DNA AcHobo 886 953 0 660 193 28 39 chr3 22946301 22946482 -195090676 - MER53 DNA DNA -9 180 2 189 277 77 0 chr3 22946746 22946811 -195090347 - MIR SINE MIR -62 146 77 482 243 62 22 chr3 22946898 22947094 -195090064 + MIR SINE MIR 1 208 -54 674 211 62 37 chr3 22947319 22947480 -195089678 + FRAM SINE Alu 2 166 0 592 307 97 25 chr3 22947703 22947941 -195089217 - MIR SINE MIR -1 261 7 344 260 14 0 chr3 22947935 22948008 -195089150 + L2 LINE L2 3238 3311 -2 * 304 228 0 0 chr3 22948111 22948168 -195088990 + L2 LINE L2 3215 3271 -1 3127 160 19 14 chr3 22948435 22949023 -195088135 - L1MB7 LINE L1 -2 6182 5592 536 257 131 0 chr3 22949180 22949355 -195087803 + MIR SINE MIR 49 246 -16 181 281 53 35 chr3 22949414 22949471 -195087687 - MIR SINE MIR -64 144 87 408 195 153 34 chr3 22949605 22949723 -195087435 + MIR SINE MIR 74 205 -57 263 238 32 0 chr3 22949979 22950042 -195087116 + L2 LINE L2 3248 3312 -1 219 349 16 0 chr3 22950143 22950206 -195086952 + L2 LINE L2 3246 3309 -4 305 224 106 12 chr3 22951240 22951325 -195085833 - L2 LINE L2 -172 3100 3008 220 338 13 13 chr3 22951479 22951556 -195085602 + MIR SINE MIR 186 262 0 253 193 34 68 chr3 22951810 22951898 -195085260 + L2 LINE L2 3225 3309 -4 242 329 0 0 chr3 22951972 22952056 -195085102 - MER117 DNA MER1_type 0 197 114 270 111 238 0 chr3 22952056 22952119 -195085039 - MLT1K LTR MaLR 0 588 511 247 226 16 0 chr3 22952536 22952598 -195084560 - MER117 DNA MER1_type -79 118 56 304 231 176 22 chr3 22952689 22952780 -195084378 + MIR SINE MIR 32 136 -72 1806 166 34 9 chr3 22952785 22953111 -195084047 + MLT1A1 LTR MaLR 5 338 -27 291 266 80 9 chr3 22953125 22953238 -195083920 + MIR SINE MIR 132 252 -10 1312 264 68 15 chr3 22953246 22953644 -195083514 - LTR16C LTR ERVL -2 489 71 4052 163 25 26 chr3 22954240 22954746 -195082412 - L1MB7 LINE L1 -11 6173 5667 2402 160 13 8 chr3 22954746 22955140 -195082018 + MSTD LTR MaLR 1 396 0 4052 163 25 26 chr3 22955140 22955424 -195081734 - L1MB7 LINE L1 -517 5667 5384 2260 291 9 7 chr3 22955616 22956197 -195080961 - MLT1K LTR MaLR -4 584 3 1338 194 6 2 chr3 22956401 22956711 -195080447 - MLT1A1 LTR MaLR 0 365 1 477 302 44 19 chr3 22957581 22957740 -195079418 + MIR SINE MIR 21 183 -79 803 148 8 0 chr3 22958090 22958218 -195078940 + FLAM_C SINE Alu 5 133 0 449 238 16 32 chr3 22958763 22958889 -195078269 + MLT1J2 LTR MaLR 84 207 -243 1291 176 176 60 chr3 22958960 22959313 -195077845 + MSTD LTR MaLR 1 394 -2 1091 128 6 34 chr3 22959382 22959561 -195077597 + MER20 DNA MER1_type 46 219 0 428 296 19 19 chr3 22959584 22959746 -195077412 + L2 LINE L2 2710 2871 -443 503 311 114 18 chr3 22960042 22960270 -195076888 + MIR SINE MIR 11 260 -2 355 276 20 0 chr3 22960997 22961095 -195076063 + MIR SINE MIR 109 208 -54 590 161 90 13 chr3 22961096 22961251 -195075907 - L1 LINE L1 -3004 3142 2976 3407 137 28 18 chr3 22961252 22961851 -195075307 + L1MA7 LINE L1 5687 6291 0 238 250 42 0 chr3 22961872 22961944 -195075214 + MLT1F1 LTR MaLR 73 147 -420 2273 237 23 11 chr3 22961944 22962502 -195074656 + L1MC3 LINE L1 7213 7777 -8 450 284 87 28 chr3 22962705 22962923 -195074235 + L2 LINE L2 2666 2896 -418 2152 196 40 13 chr3 22963398 22963853 -195073305 + MLT1C LTR MaLR 1 467 0 735 250 14 55 chr3 22964624 22964813 -195072345 + MIR SINE MIR 20 199 -63 203 323 20 30 chr3 22966462 22966561 -195070597 + MIR SINE MIR 63 160 -102 307 271 57 16 chr3 22966909 22967031 -195070127 + MIR SINE MIR 114 240 -22 571 297 43 9 chr3 22967051 22967283 -195069875 - MLT1D LTR MaLR -3 502 263 293 311 49 8 chr3 22967843 22967965 -195069193 + MIR SINE MIR 114 240 -22 1604 236 89 23 chr3 22967984 22968455 -195068703 - MLT1D LTR MaLR -3 502 1 731 169 90 24 chr3 22968486 22968652 -195068506 - MIR SINE MIR -66 196 20 1804 61 0 41 chr3 22968668 22968913 -195068245 - AluSg SINE Alu -75 235 1 200 205 0 0 chr3 22968950 22968989 -195068169 + MIR SINE MIR 224 262 0 639 250 0 0 chr3 22970182 22970310 -195066848 - MIR SINE MIR -51 211 84 2362 46 0 0 chr3 22970328 22970610 -195066548 + AluSp SINE Alu 1 282 -31 1883 134 20 0 chr3 22972743 22973035 -195064123 + AluJb SINE Alu 1 298 -14 2289 248 97 26 chr3 22973679 22974514 -195062644 - L1MC4 LINE L1 -30 8012 7119 283 262 90 33 chr3 22975006 22975128 -195062030 + MIR SINE MIR 87 215 -47 233 226 97 54 chr3 22975187 22975280 -195061878 + L2 LINE L2 1875 1971 -1343 225 350 120 8 chr3 22975341 22975575 -195061583 + L2 LINE L2 2806 3065 -248 571 266 62 21 chr3 22975801 22975993 -195061165 + L2 LINE L2 3111 3310 -3 522 272 15 29 chr3 22976270 22976406 -195060752 - L2 LINE L2 0 3313 3180 222 250 47 94 chr3 22976784 22976912 -195060246 - L2 LINE L2 -10 3262 3141 1351 168 39 81 chr3 22977117 22977426 -195059732 + AluJo SINE Alu 5 300 -12 2081 121 0 0 chr3 22977932 22978229 -195058929 + AluSg SINE Alu 1 297 -13 200 233 53 120 chr3 22978303 22978436 -195058722 + MIR SINE MIR 28 151 -111 233 270 0 16 chr3 22980326 22980389 -195056769 - L2 LINE L2 -13 3259 3198 295 323 21 0 chr3 22980605 22980698 -195056460 + MIR SINE MIR 59 153 -109 784 157 0 22 chr3 22981436 22981570 -195055588 - AluJ SINE Alu 0 312 182 817 129 8 0 chr3 22981579 22981703 -195055455 - AluJ SINE Alu -187 125 1 225 0 0 0 chr3 22983635 22983660 -195053498 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2182 82 3 28 chr3 22984145 22984464 -195052694 + AluY SINE Alu 1 311 0 2230 85 3 0 chr3 22984737 22985031 -195052127 + AluSx SINE Alu 1 295 -17 27 29 0 0 chr3 22986911 22986945 -195050213 + AT_rich Low_complexity Low_complexity 1 34 0 794 266 54 76 chr3 22987154 22987616 -195049542 - MLT1J LTR MaLR -52 459 8 569 324 94 25 chr3 22987997 22988241 -195048917 + MIR SINE MIR 2 262 0 221 285 33 80 chr3 22990743 22990894 -195046264 - MIR3 SINE MIR -62 146 3 2241 181 32 7 chr3 22991046 22991477 -195045681 + L1M4 LINE L1 4594 5035 -1111 2517 63 0 3 chr3 22991609 22991908 -195045250 + AluY SINE Alu 1 298 -13 1176 78 13 13 chr3 22992418 22992572 -195044586 + AluSp SINE Alu 147 300 -13 1187 164 130 34 chr3 22992583 22992907 -195044251 - Charlie5 DNA MER1_type -25 2587 2233 360 265 39 0 chr3 22992902 22993004 -195044154 - Charlie5 DNA MER1_type -2506 106 1 * 2057 110 38 10 chr3 22994071 22994387 -195042771 - AluSx SINE Alu 0 312 1 2378 93 0 3 chr3 22995885 22996196 -195040962 - AluSq SINE Alu -3 310 1 239 301 125 34 chr3 22996798 22996974 -195040184 + L2 LINE L2 3076 3267 -5 316 360 36 21 chr3 22997294 22997553 -195039605 + L2 LINE L2 2777 3037 -235 198 0 0 0 chr3 22997554 22997576 -195039582 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 557 251 95 71 chr3 22997791 22998158 -195039000 - MLT1J LTR MaLR -31 584 201 3966 167 63 15 chr3 22998252 22999061 -195038097 + L1MB8 LINE L1 5331 6178 0 418 203 203 7 chr3 23000353 23000501 -195036657 + MER104 DNA MER2_type 4 180 0 192 97 0 0 chr3 23001388 23001419 -195035739 + (CCA)n Simple_repeat Simple_repeat 3 33 0 2379 99 0 0 chr3 23001993 23002296 -195034862 + AluSg SINE Alu 1 303 -7 410 303 25 12 chr3 23002879 23003041 -195034117 + L1ME3A LINE L1 5493 5656 -514 209 274 119 0 chr3 23003043 23003127 -195034031 - MER5C DNA MER1_type -2 322 229 208 296 10 51 chr3 23003138 23003236 -195033922 - MER5C DNA MER1_type -200 124 31 302 296 42 58 chr3 23003248 23003302 -195033856 + L1ME3A LINE L1 5649 5702 -468 834 138 15 15 chr3 23003302 23003432 -195033726 + FLAM_C SINE Alu 4 133 0 302 296 42 58 chr3 23003432 23003617 -195033541 + L1ME3A LINE L1 5702 5884 -286 207 69 0 0 chr3 23003977 23004006 -195033152 + (TC)n Simple_repeat Simple_repeat 1 29 0 267 103 0 0 chr3 23004006 23004045 -195033113 + (TG)n Simple_repeat Simple_repeat 2 40 0 4781 137 23 29 chr3 23004045 23004377 -195032781 - L1MA9 LINE L1 -162 6150 5818 2387 94 0 0 chr3 23004377 23004685 -195032473 - AluSc SINE Alu -1 308 1 4781 137 23 29 chr3 23004685 23005211 -195031947 - L1MA9 LINE L1 -494 5818 5297 2274 115 6 6 chr3 23006773 23007085 -195030073 + AluSx SINE Alu 1 312 0 335 274 17 34 chr3 23009590 23009707 -195027451 - L2 LINE L2 -6 3307 3193 605 124 124 70 chr3 23010021 23010150 -195027008 + MER44D DNA MER2_type 1 406 -203 23728 139 37 12 chr3 23010151 23013314 -195023844 - L1MA3 LINE L1 0 7724 4641 2242 123 0 3 chr3 23013314 23013614 -195023544 - AluSx SINE Alu -11 301 3 23728 139 37 12 chr3 23013614 23014894 -195022264 - L1MA3 LINE L1 -3083 4641 3394 1828 129 53 0 chr3 23014894 23015198 -195021960 - AluSx SINE Alu 0 324 7 23728 139 37 12 chr3 23015198 23016084 -195021074 - L1MA3 LINE L1 -4330 3394 2532 4765 50 0 14 chr3 23016084 23016670 -195020488 - L1PA6 LINE L1 -6 6148 5571 23728 139 37 12 chr3 23016670 23018862 -195018296 - L1MA3 LINE L1 -5192 2532 20 1019 178 55 0 chr3 23018865 23019067 -195018091 + MER44D DNA MER2_type 385 597 -8 2608 72 29 0 chr3 23020582 23020927 -195016231 - THE1A LTR MaLR 0 355 1 2906 67 30 40 chr3 23020927 23020968 -195016190 - THE1A-int LTR MaLR 0 1580 1540 2283 117 0 0 chr3 23020968 23021268 -195015890 - AluSx SINE Alu -12 300 1 2906 67 30 40 chr3 23021268 23021631 -195015527 - THE1A-int LTR MaLR -40 1540 1180 263 222 34 77 chr3 23022016 23022133 -195015025 - MIR SINE MIR -82 180 69 184 288 30 0 chr3 23024209 23024275 -195012883 - MIR SINE MIR -59 149 82 294 341 50 22 chr3 23024277 23024459 -195012699 - MIR3 SINE MIR -6 202 16 409 260 102 16 chr3 23025182 23025309 -195011849 + MIR3 SINE MIR 34 171 -37 2471 77 0 0 chr3 23025495 23025795 -195011363 + AluY SINE Alu 1 300 -11 10209 221 38 37 chr3 23025891 23025973 -195011185 - L1M4 LINE L1 -712 5702 5622 423 0 0 0 chr3 23025973 23026020 -195011138 + (TG)n Simple_repeat Simple_repeat 2 48 0 10209 221 38 37 chr3 23026020 23026340 -195010818 - L1M4 LINE L1 -792 5622 5304 2383 91 7 13 chr3 23026340 23026649 -195010509 - AluSp SINE Alu -6 307 1 10209 221 38 37 chr3 23026649 23027160 -195009998 - L1M4 LINE L1 -1110 5304 4795 2086 125 4 0 chr3 23027160 23027470 -195009688 - AluSx SINE Alu 0 311 1 10209 221 38 37 chr3 23027470 23029410 -195007748 - L1M4 LINE L1 -1619 4795 2845 2233 118 0 13 chr3 23029410 23029724 -195007434 - AluSx SINE Alu -2 310 1 10209 221 38 37 chr3 23029724 23030101 -195007057 - L1M4 LINE L1 -3569 2845 2470 1456 189 118 38 chr3 23030250 23030420 -195006738 + MLT1C LTR MaLR 7 162 -305 444 104 0 0 chr3 23030420 23030487 -195006671 + (CA)n Simple_repeat Simple_repeat 2 68 0 1456 189 118 38 chr3 23030487 23030740 -195006418 + MLT1C LTR MaLR 162 464 -3 3156 214 29 18 chr3 23030758 23031634 -195005524 - L1M4 LINE L1 -4229 2155 1179 245 247 71 35 chr3 23031836 23031921 -195005237 + MIR SINE MIR 46 133 -129 577 159 11 0 chr3 23031921 23032009 -195005149 - MER81 DNA DNA 0 114 26 213 176 98 0 chr3 23032018 23032069 -195005089 + MIR SINE MIR 128 183 -79 1919 151 3 31 chr3 23032858 23033175 -195003983 - AluJo SINE Alu -2 310 3 23 0 0 0 chr3 23033936 23033959 -195003199 + AT_rich Low_complexity Low_complexity 1 23 0 29 28 0 0 chr3 23034226 23034262 -195002896 + AT_rich Low_complexity Low_complexity 1 36 0 1029 160 129 10 chr3 23034293 23034487 -195002671 - MER20 DNA MER1_type 0 219 3 288 252 19 39 chr3 23035030 23035133 -195002025 - MER5B DNA MER1_type -1 177 77 338 292 62 28 chr3 23035310 23035454 -195001704 + MIR3 SINE MIR 2 150 -58 2836 266 76 40 chr3 23035901 23037490 -194999668 - L1ME LINE L1 -4440 1640 6 344 316 35 0 chr3 23038118 23038232 -194998926 - MIR SINE MIR -142 120 3 2379 74 0 3 chr3 23038266 23038601 -194998557 - AluY SINE Alu 0 335 2 462 18 0 0 chr3 23038806 23038861 -194998297 + (TTG)n Simple_repeat Simple_repeat 1 55 0 1799 301 38 11 chr3 23040234 23040785 -194996373 - MLT1K LTR MaLR 0 588 23 219 343 131 45 chr3 23040834 23041032 -194996126 + L2 LINE L2 3056 3270 -2 557 206 0 64 chr3 23041301 23041442 -194995716 - MER94 DNA DNA -1 133 2 290 263 115 77 chr3 23041667 23041823 -194995335 - L2 LINE L2 0 3272 3111 1789 117 33 4 chr3 23042050 23042391 -194994767 - AluSx SINE Alu 0 349 1 1222 218 29 3 chr3 23042777 23043093 -194994065 + MER33 DNA MER1_type 1 324 0 181 287 0 81 chr3 23044174 23044261 -194992897 - L2 LINE L2 -159 3113 3034 739 219 186 39 chr3 23044346 23044657 -194992501 - LTR16A LTR ERVL -6 444 88 297 272 121 92 chr3 23044751 23045056 -194992102 - L2 LINE L2 -8 3264 2951 202 292 97 0 chr3 23045899 23046012 -194991146 + L2 LINE L2 2968 3091 -181 193 260 78 13 chr3 23046225 23046302 -194990856 - L2 LINE L2 -74 3239 3158 395 313 30 24 chr3 23046993 23047159 -194989999 - L2 LINE L2 -43 3270 3104 974 212 150 27 chr3 23047169 23047462 -194989696 + MER58B DNA MER1_type 1 329 -12 511 291 57 8 chr3 23047476 23047789 -194989369 - L2 LINE L2 -196 3117 2783 2059 107 7 0 chr3 23047818 23048117 -194989041 - AluSx SINE Alu -11 301 1 1058 238 62 40 chr3 23048168 23048521 -194988637 - L1ME3A LINE L1 -2 6428 6068 940 226 72 25 chr3 23048905 23049290 -194987868 - MER68 LTR ERV1 -122 440 1 2402 189 50 20 chr3 23049290 23049990 -194987168 - L1ME3A LINE L1 -540 6064 5337 1280 184 9 0 chr3 23049990 23050207 -194986951 + MER20 DNA MER1_type 1 219 0 2402 189 50 20 chr3 23050207 23050429 -194986729 - L1ME3A LINE L1 -1267 5337 5123 1083 184 24 0 chr3 23050443 23050649 -194986509 - L1ME3A LINE L1 -2267 4139 3929 * 3375 252 82 32 chr3 23050630 23051132 -194986026 - L1M4 LINE L1 -2215 3931 3455 2214 96 0 0 chr3 23051132 23051424 -194985734 - AluSc SINE Alu -17 292 1 3375 252 82 32 chr3 23051424 23052632 -194984526 - L1M4 LINE L1 -2691 3455 2136 756 303 71 58 chr3 23052652 23053032 -194984126 - L1ME3A LINE L1 -4131 2456 2072 2192 101 0 3 chr3 23053035 23053332 -194983826 - AluSx SINE Alu -16 296 1 579 259 4 30 chr3 23053394 23053626 -194983532 - L1M4 LINE L1 -2666 3480 3255 344 222 141 59 chr3 23053626 23053722 -194983436 - L1ME3A LINE L1 -4637 1950 1863 2170 128 0 0 chr3 23053722 23054028 -194983130 - AluSx SINE Alu -6 306 1 1811 150 0 0 chr3 23054037 23054304 -194982854 - AluSx SINE Alu -45 267 1 344 222 141 59 chr3 23054304 23054332 -194982826 - L1ME3A LINE L1 -4731 1856 1805 387 288 84 34 chr3 23054343 23054666 -194982492 - L1ME3A LINE L1 -4773 1635 1297 448 281 91 17 chr3 23054717 23054780 -194982378 - L1MDb LINE L1 -4957 1439 1382 15605 123 21 10 chr3 23054780 23055602 -194981556 - Tigger1 DNA MER2_type 0 2418 1606 2184 111 0 13 chr3 23055602 23055772 -194981386 - AluSx SINE Alu -9 303 132 2251 81 0 10 chr3 23055772 23056068 -194981090 - AluY SINE Alu -18 293 1 2055 92 6 68 chr3 23056068 23056393 -194980765 - AluSp SINE Alu -8 305 1 2184 111 0 13 chr3 23056393 23056528 -194980630 - AluSx SINE Alu -178 134 1 15605 123 21 10 chr3 23056528 23058097 -194979061 - Tigger1 DNA MER2_type -812 1606 1 448 281 91 17 chr3 23058097 23058425 -194978733 - L1MDb LINE L1 -5014 1382 1030 2024 188 7 63 chr3 23059055 23059502 -194977656 - MER66B LTR ERV1 -38 448 27 343 288 39 48 chr3 23059509 23059554 -194977604 - L2 LINE L2 -658 2656 2612 469 43 145 0 chr3 23059554 23059623 -194977535 + MADE1 DNA Mariner 1 79 -1 343 288 39 48 chr3 23059623 23059778 -194977380 - L2 LINE L2 -702 2612 2370 2748 79 3 3 chr3 23060088 23060441 -194976717 - THE1A LTR MaLR 0 355 3 11852 88 14 1 chr3 23060443 23062004 -194975154 - THE1A-int LTR MaLR 0 1580 1 2681 82 8 3 chr3 23062004 23062357 -194974801 - THE1A LTR MaLR 0 355 1 430 293 127 6 chr3 23062616 23062797 -194974361 - LTR33 LTR ERVL -198 323 121 607 271 23 7 chr3 23062985 23063259 -194973899 - L1MC/D LINE L1 -2081 6225 5864 1193 189 35 16 chr3 23063264 23063518 -194973640 - L1MB4 LINE L1 -14 6166 5908 1767 230 38 9 chr3 23063518 23063966 -194973192 - MER65C LTR ERV1 0 461 1 1950 223 56 71 chr3 23064460 23065011 -194972147 - MER65-int LTR ERV1 -656 4215 3673 27 62 0 0 chr3 23065182 23065230 -194971928 + AT_rich Low_complexity Low_complexity 1 48 0 4466 238 46 14 chr3 23065246 23066702 -194970456 - L1MC/D LINE L1 -2386 4258 2756 701 192 0 0 chr3 23066703 23066823 -194970335 - FLAM_A SINE Alu -15 127 8 5075 189 106 39 chr3 23066835 23067624 -194969534 - L1MC/D LINE L1 -3885 2761 2027 1660 171 10 26 chr3 23067624 23067929 -194969229 + AluJb SINE Alu 1 300 -12 5075 189 106 39 chr3 23067929 23068606 -194968552 - L1MC/D LINE L1 -4619 2027 1196 1557 156 8 4 chr3 23068605 23068843 -194968315 + L1P3 LINE L1 2 240 -6221 * 9578 66 0 0 chr3 23068845 23070846 -194966312 + L1PA6 LINE L1 4148 6143 -11 2122 206 59 74 chr3 23070847 23071537 -194965621 - L1MC/D LINE L1 -5342 1200 521 445 213 8 16 chr3 23071678 23071800 -194965358 + Alu SINE Alu 183 303 -7 287 173 0 19 chr3 23072046 23072098 -194965060 + L2 LINE L2 3255 3305 -8 1333 247 117 43 chr3 23072098 23072899 -194964259 - L2 LINE L2 -8 3305 2438 355 280 32 0 chr3 23072925 23073018 -194964140 - MIR SINE MIR -61 147 52 247 327 0 19 chr3 23075065 23075169 -194961989 + L3 LINE CR1 987 1088 -489 892 190 42 53 chr3 23075380 23075643 -194961515 + L1ME LINE L1 5391 5650 -520 2092 63 7 7 chr3 23075729 23076034 -194961124 - AluY SINE Alu 0 305 1 320 196 36 63 chr3 23076039 23076164 -194960994 - MIR SINE MIR -68 140 31 639 247 41 111 chr3 23076323 23076750 -194960408 + L1ME4a LINE L1 4987 5384 -782 1731 165 0 13 chr3 23076758 23077074 -194960084 + AluJo SINE Alu 1 312 0 606 288 104 47 chr3 23077158 23077457 -194959701 + L1M4 LINE L1 58 373 -6169 295 191 20 35 chr3 23077815 23078021 -194959137 + G-rich Low_complexity Low_complexity 1 202 0 364 307 49 9 chr3 23078667 23078779 -194958379 + L1ME4a LINE L1 5676 5782 -339 1941 111 0 0 chr3 23078779 23079049 -194958109 + AluSg SINE Alu 35 304 -6 364 307 49 9 chr3 23079049 23079161 -194957997 + L1ME4a LINE L1 5782 5909 -212 259 246 116 0 chr3 23079448 23079517 -194957641 + MIR SINE MIR 48 124 -84 192 331 105 8 chr3 23080001 23080134 -194957024 - L3 LINE CR1 -223 1354 1209 849 122 0 0 chr3 23080843 23080974 -194956184 - FRAM SINE Alu -6 170 40 415 260 79 13 chr3 23081245 23081420 -194955738 + MIR SINE MIR 6 191 -58 1659 170 14 17 chr3 23082047 23082341 -194954817 - MLT1A1 LTR MaLR -65 300 8 326 272 160 16 chr3 23082453 23082578 -194954580 + MIR SINE MIR 69 211 -51 344 222 20 20 chr3 23082758 23082857 -194954301 + (CA)n Simple_repeat Simple_repeat 2 100 0 208 206 8 30 chr3 23082881 23083012 -194954146 + (CA)n Simple_repeat Simple_repeat 1 128 0 218 338 93 65 chr3 23083024 23083163 -194953995 + L3 LINE CR1 168 310 -1267 263 211 42 0 chr3 23083192 23083263 -194953895 - MLT1G3 LTR MaLR 0 595 522 309 151 0 0 chr3 23083264 23083317 -194953841 + (TTG)n Simple_repeat Simple_repeat 2 54 0 987 219 99 33 chr3 23083344 23083745 -194953413 - MLT1G3 LTR MaLR -107 460 1 328 288 283 19 chr3 23083815 23084027 -194953131 + L3 LINE CR1 430 697 -880 190 283 40 30 chr3 23087262 23087361 -194949797 - L2 LINE L2 -556 2758 2659 187 200 0 0 chr3 23089465 23089479 -194947679 + L2 LINE L2 3262 3275 -38 365 303 27 38 chr3 23089479 23089661 -194947497 + MIR3 SINE MIR 2 180 -63 1599 213 136 22 chr3 23089754 23089780 -194947378 - MLT1C LTR MaLR -7 460 438 1585 181 67 6 chr3 23089780 23090123 -194947035 + MLT1A1 LTR MaLR 2 365 0 1599 213 136 22 chr3 23090123 23090509 -194946649 - MLT1C LTR MaLR -29 438 1 306 237 16 21 chr3 23092161 23092391 -194944767 + GA-rich Low_complexity Low_complexity 1 228 0 1129 222 166 15 chr3 23094237 23094632 -194942526 - MER41B LTR ERV1 -10 560 173 201 194 0 0 chr3 23094709 23094745 -194942413 - MIR SINE MIR -61 147 112 552 293 11 21 chr3 23094849 23095040 -194942118 + L1ME LINE L1 3 191 -5928 1175 240 81 17 chr3 23095063 23095706 -194941452 + L1ME LINE L1 4879 5573 -576 2350 96 0 7 chr3 23096489 23096792 -194940366 + AluSq SINE Alu 1 301 -12 1296 161 10 0 chr3 23097153 23097346 -194939812 + AluJb SINE Alu 82 276 -36 361 322 88 22 chr3 23097395 23097712 -194939446 + HAL1 LINE L1 1218 1555 -952 695 270 72 46 chr3 23098010 23098063 -194939095 + L1MEd LINE L1 2125 2175 -3954 2714 161 8 0 chr3 23098063 23098561 -194938597 + L1MB8 LINE L1 5675 6176 -2 695 270 72 46 chr3 23098561 23098891 -194938267 + L1MEd LINE L1 2175 2495 -3634 781 196 0 0 chr3 23098891 23099024 -194938134 - FLAM_A SINE Alu 0 133 1 695 270 72 46 chr3 23099024 23099467 -194937691 + L1MEd LINE L1 2495 3011 -3118 891 266 143 26 chr3 23099699 23100083 -194937075 + MLT1J2 LTR MaLR 1 429 -21 2000 110 25 3 chr3 23100278 23100560 -194936598 + AluJb SINE Alu 12 299 -13 2269 145 70 2 chr3 23100716 23101117 -194936041 + MSTA LTR MaLR 1 428 0 974 199 23 5 chr3 23101159 23101380 -194935778 - L1ME3A LINE L1 -213 5957 5733 715 292 79 61 chr3 23101376 23101783 -194935375 + L1MEd LINE L1 3618 4043 -2086 * 2373 111 0 0 chr3 23101783 23102089 -194935069 - AluSq SINE Alu -6 307 2 715 292 79 61 chr3 23102089 23102353 -194934805 + L1MEd LINE L1 4043 4301 -1828 380 313 36 26 chr3 23102649 23102844 -194934314 + MIR SINE MIR 59 255 -7 347 255 88 0 chr3 23103389 23103491 -194933667 - MER112 DNA MER1_type -6 254 144 1135 169 0 6 chr3 23103547 23103730 -194933428 + AluSg/x SINE Alu 120 301 -11 267 283 106 9 chr3 23103745 23103858 -194933300 + MIR SINE MIR 70 193 -69 253 267 0 0 chr3 23103918 23103978 -194933180 - MER112 DNA MER1_type -200 60 1 206 324 37 9 chr3 23104420 23104528 -194932630 - MIR SINE MIR -65 143 33 325 314 94 23 chr3 23104608 23104907 -194932251 + L2 LINE L2 2826 3145 -168 419 306 35 35 chr3 23104955 23105154 -194932004 + MIR SINE MIR 53 251 -11 3140 152 136 57 chr3 23105161 23105713 -194931445 + L1MB8 LINE L1 5302 5936 -242 2124 95 33 16 chr3 23105713 23106019 -194931139 - AluSx SINE Alu -1 311 1 3140 152 136 57 chr3 23106019 23106251 -194930907 + L1MB8 LINE L1 5936 6148 -30 591 218 155 0 chr3 23106255 23106397 -194930761 - MIR SINE MIR -86 176 13 210 378 24 8 chr3 23106536 23106663 -194930495 - MIR3 SINE MIR -42 166 38 200 235 99 25 chr3 23106796 23106877 -194930281 + MIR3 SINE MIR 115 201 -7 345 200 14 0 chr3 23107622 23107692 -194929466 - MLT1K LTR MaLR -373 215 145 199 158 88 18 chr3 23107786 23107843 -194929315 + MIR SINE MIR 81 141 -67 214 333 61 18 chr3 23107987 23108101 -194929057 - MIR SINE MIR -15 247 129 1352 162 50 14 chr3 23108101 23108379 -194928779 - L1MC1 LINE L1 -5 6328 6041 430 311 90 11 chr3 23108389 23108756 -194928402 - L2 LINE L2 -522 2792 2305 2079 145 0 0 chr3 23109050 23109353 -194927805 - AluSx SINE Alu -9 303 1 351 246 68 0 chr3 23109411 23109529 -194927629 - MER113 DNA MER1_type? -92 429 304 1279 157 8 58 chr3 23109532 23109774 -194927384 - AluJo SINE Alu 0 312 83 773 259 152 7 chr3 23109777 23110047 -194927111 - MER113 DNA MER1_type? -207 314 6 2338 90 0 0 chr3 23110946 23111235 -194925923 + AluSx SINE Alu 12 300 -12 654 294 6 6 chr3 23111247 23111427 -194925731 - MIR SINE MIR -49 213 34 189 0 0 0 chr3 23112303 23112324 -194924834 + (A)n Simple_repeat Simple_repeat 1 21 0 395 302 8 0 chr3 23112750 23112876 -194924282 - L3 LINE CR1 -71 1506 1380 462 262 84 21 chr3 23112896 23113087 -194924071 - L2 LINE L2 -64 3249 3047 180 323 71 0 chr3 23113085 23113184 -194923974 - L3 LINE CR1 -193 1384 1279 * 297 360 91 28 chr3 23113312 23113565 -194923593 - L3 LINE CR1 -563 1014 746 924 296 54 72 chr3 23113616 23114339 -194922819 + L1MC4a LINE L1 5255 5964 -1844 346 278 103 0 chr3 23114859 23114985 -194922173 + MER117 DNA MER1_type 4 142 -55 345 320 203 0 chr3 23115050 23115203 -194921955 - MER5A DNA MER1_type -2 187 4 259 265 271 0 chr3 23115264 23115415 -194921743 - MIR SINE MIR -10 252 61 233 299 23 23 chr3 23115986 23116073 -194921085 + MIR SINE MIR 62 148 -114 741 223 36 21 chr3 23116074 23116267 -194920891 - L2 LINE L2 0 3313 3118 323 172 16 0 chr3 23116606 23116670 -194920488 + LTR16A1 LTR ERVL 65 129 -328 446 244 62 12 chr3 23116724 23116884 -194920274 + LTR16A1 LTR ERVL 226 393 -64 512 218 0 0 chr3 23116960 23117047 -194920111 - MER81 DNA DNA -22 92 6 190 310 212 9 chr3 23117077 23117190 -194919968 - L2 LINE L2 0 3313 3178 202 189 0 0 chr3 23117422 23117459 -194919699 + MIR SINE MIR 103 139 -123 377 220 70 20 chr3 23117637 23117737 -194919421 - MIR SINE MIR -98 164 60 876 274 29 4 chr3 23117883 23118124 -194919034 + MIR SINE MIR 13 259 -3 255 179 54 0 chr3 23118154 23118210 -194918948 + L1ME LINE L1 5714 5772 -349 667 291 49 4 chr3 23118218 23118465 -194918693 + L1M4 LINE L1 4722 4979 -1167 182 277 62 0 chr3 23119192 23119257 -194917901 + MIR SINE MIR 106 174 -88 207 262 16 0 chr3 23119273 23119334 -194917824 - L2 LINE L2 -1 3271 3210 654 219 34 51 chr3 23119334 23119512 -194917646 + MER45A DNA AcHobo 3 177 -1 313 277 143 0 chr3 23119779 23119891 -194917267 + MIR SINE MIR 17 144 -118 183 238 0 0 chr3 23120262 23120304 -194916854 - L2 LINE L2 -15 3298 3257 401 355 24 5 chr3 23120317 23120528 -194916630 - MIR SINE MIR 0 262 48 247 242 275 0 chr3 23121770 23121890 -194915268 + MIR SINE MIR 106 258 -4 906 266 98 21 chr3 23121960 23122427 -194914731 - L2 LINE L2 -7 3306 2804 266 324 7 47 chr3 23122757 23122905 -194914253 + L2 LINE L2 2651 2792 -522 259 374 113 4 chr3 23124042 23124280 -194912878 + L2 LINE L2 2915 3178 -94 481 269 46 0 chr3 23124302 23124432 -194912726 - MIR SINE MIR -68 194 59 221 280 7 126 chr3 23125116 23125259 -194911899 - MIR SINE MIR -11 251 126 684 254 29 57 chr3 23125303 23125512 -194911646 + MIR SINE MIR 59 261 -1 180 178 267 0 chr3 23125514 23125559 -194911599 - MIR SINE MIR -68 140 84 259 200 0 0 chr3 23126162 23126212 -194910946 + L2 LINE L2 3264 3313 0 421 294 104 6 chr3 23126272 23126435 -194910723 + MIR SINE MIR 3 181 -81 390 254 123 0 chr3 23126969 23127083 -194910075 + MIR SINE MIR 93 220 -42 23 0 0 0 chr3 23127594 23127617 -194909541 + AT_rich Low_complexity Low_complexity 1 23 0 380 293 0 17 chr3 23127704 23127885 -194909273 + (CCA)n Simple_repeat Simple_repeat 1 178 0 520 298 6 6 chr3 23127990 23128168 -194908990 + (CCA)n Simple_repeat Simple_repeat 3 180 0 223 246 33 0 chr3 23128299 23128360 -194908798 - MIR3 SINE MIR -21 187 125 181 288 0 38 chr3 23128392 23128472 -194908686 + L2 LINE L2 2898 2974 -298 287 167 0 0 chr3 23128720 23128774 -194908384 + L2 LINE L2 3012 3065 -248 252 132 309 0 chr3 23128793 23128861 -194908297 - MER5A DNA MER1_type -34 155 67 239 107 0 53 chr3 23129365 23129440 -194907718 + (CCCCCG)n Simple_repeat Simple_repeat 3 73 0 42 36 0 0 chr3 23129491 23129547 -194907611 + GC_rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chr3 23129601 23129623 -194907535 + GC_rich Low_complexity Low_complexity 1 22 0 408 40 0 0 chr3 23130777 23130827 -194906331 + (TG)n Simple_repeat Simple_repeat 2 51 0 490 275 186 31 chr3 23131453 23131646 -194905512 + MIR SINE MIR 40 262 0 * 699 319 64 8 chr3 23131630 23131865 -194905293 - MIR SINE MIR 0 262 15 482 313 28 11 chr3 23131942 23132121 -194905037 - MIR SINE MIR -80 182 1 539 244 7 7 chr3 23132426 23132561 -194904597 - MIR3 SINE MIR -50 158 24 1958 256 136 26 chr3 23133303 23134344 -194902814 + L2 LINE L2 2087 3308 -5 266 316 35 18 chr3 23134594 23134708 -194902450 + MIR SINE MIR 32 147 -61 531 198 182 27 chr3 23135206 23135393 -194901765 - MIR SINE MIR -16 246 31 1343 166 42 7 chr3 23135744 23135974 -194901184 + MER33 DNA MER1_type 1 244 -2341 2170 138 0 0 chr3 23135974 23136271 -194900887 - AluSq SINE Alu -16 297 1 1343 166 42 7 chr3 23136271 23136324 -194900834 + MER33 DNA MER1_type 244 294 -30 272 279 0 0 chr3 23136781 23136849 -194900309 + L2 LINE L2 2991 3058 -255 392 282 5 38 chr3 23140402 23140569 -194896589 + MIR3 SINE MIR 3 169 -63 2533 88 0 0 chr3 23140595 23140903 -194896255 + AluSc SINE Alu 1 308 -1 541 364 21 4 chr3 23142045 23142281 -194894877 - L3 LINE CR1 -87 1490 1251 484 308 90 0 chr3 23142291 23142447 -194894711 - MIR3 SINE MIR -6 202 33 321 282 61 8 chr3 23142475 23142606 -194894552 - MER91C DNA MER1_type -2 138 1 246 236 14 42 chr3 23142718 23142790 -194894368 - MIR SINE MIR -19 243 174 263 225 166 33 chr3 23143311 23143425 -194893733 + MIR3 SINE MIR 39 167 -41 1075 222 138 11 chr3 23143451 23143807 -194893351 + MER113 DNA MER1_type? 46 446 -75 1535 151 6 130 chr3 23144099 23144444 -194892714 + AluJo SINE Alu 1 302 -10 182 188 0 0 chr3 23144512 23144544 -194892614 - MIR3 SINE MIR -48 160 129 330 169 0 0 chr3 23145007 23145072 -194892086 + CT-rich Low_complexity Low_complexity 1 65 0 711 257 174 5 chr3 23145205 23145423 -194891735 + MIR SINE MIR 8 262 0 181 286 32 32 chr3 23145421 23145484 -194891674 - MIR SINE MIR -155 107 45 * 319 346 33 26 chr3 23145829 23146017 -194891141 - MIR3 SINE MIR -54 154 12 1787 58 31 4 chr3 23146058 23146283 -194890875 - AluY SINE Alu -2 309 79 229 347 129 47 chr3 23147359 23147600 -194889558 - L2 LINE L2 -2 3270 2984 1835 128 103 0 chr3 23147600 23147873 -194889285 - AluSx SINE Alu -11 301 1 229 347 129 47 chr3 23147873 23148017 -194889141 - L2 LINE L2 -288 2984 2853 878 267 142 31 chr3 23149580 23150003 -194887155 - L2 LINE L2 0 3313 2844 671 329 31 13 chr3 23151054 23151282 -194885876 - MIR SINE MIR -14 248 17 206 295 115 0 chr3 23151367 23151445 -194885713 - MIR SINE MIR -67 141 55 254 247 79 56 chr3 23152249 23152338 -194884820 + L3 LINE CR1 1378 1468 -109 1131 191 17 33 chr3 23152998 23153239 -194883919 + MIR SINE MIR 7 243 -19 303 258 75 11 chr3 23153701 23153794 -194883364 - MIR SINE MIR -54 208 110 2087 126 0 7 chr3 23153995 23154309 -194882849 + AluSx SINE Alu 1 312 0 223 253 139 13 chr3 23154781 23154860 -194882298 - MIR SINE MIR -127 135 47 229 125 62 0 chr3 23155406 23155454 -194881704 - MIR SINE MIR -57 151 101 228 282 51 67 chr3 23155661 23155856 -194881302 - L2 LINE L2 -244 3028 2837 201 310 106 0 chr3 23156556 23156669 -194880489 + MIR3 SINE MIR 66 190 -18 1894 225 108 31 chr3 23156679 23157253 -194879905 - MLT1E2 LTR MaLR -8 618 1 879 239 40 78 chr3 23157269 23157591 -194879567 - MLT1E2-int LTR MaLR -2 1369 1060 313 339 25 8 chr3 23157967 23158085 -194879073 + MIR SINE MIR 67 186 -76 2313 71 7 3 chr3 23158430 23158746 -194878412 + AluY SINE Alu 1 317 0 1445 159 6 130 chr3 23158974 23159319 -194877839 + AluJo SINE Alu 1 302 -10 182 188 0 0 chr3 23159387 23159419 -194877739 - MIR3 SINE MIR -48 160 129 330 169 0 0 chr3 23159882 23159947 -194877211 + CT-rich Low_complexity Low_complexity 1 65 0 711 257 174 5 chr3 23160080 23160298 -194876860 + MIR SINE MIR 8 262 0 181 286 32 32 chr3 23160296 23160359 -194876799 - MIR SINE MIR -155 107 45 * 392 352 34 12 chr3 23160704 23160889 -194876269 - MIR3 SINE MIR -54 154 12 2460 87 0 6 chr3 23160930 23161242 -194875916 - AluSx SINE Alu -2 310 1 1160 226 25 31 chr3 23162028 23162351 -194874807 - L1ME LINE L1 -576 5573 5253 923 246 82 3 chr3 23162366 23162671 -194874487 - L1ME LINE L1 -922 5207 4879 527 293 11 21 chr3 23162694 23162885 -194874273 - L1ME LINE L1 -5928 191 3 208 174 0 65 chr3 23162989 23163035 -194874123 + MIR3 SINE MIR 112 154 -54 1094 228 166 15 chr3 23163102 23163497 -194873661 + MER41B LTR ERV1 173 476 -10 1704 202 90 12 chr3 23164266 23164676 -194872482 + MER45B DNA AcHobo 205 646 -394 420 379 59 39 chr3 23164683 23165192 -194871966 + L1M2 LINE L1 10 528 -6321 453 186 0 12 chr3 23165229 23165315 -194871843 + L1 LINE L1 4169 4253 -1893 300 335 24 29 chr3 23165605 23165775 -194871383 - L1ME LINE L1 -309 5812 5644 217 229 42 0 chr3 23167822 23167870 -194869288 + L2 LINE L2 3204 3253 -19 2288 91 0 29 chr3 23168307 23168615 -194868543 - AluSx SINE Alu -13 299 1 471 243 93 30 chr3 23168621 23168788 -194868370 - MIR SINE MIR -24 184 37 459 0 0 0 chr3 23168838 23168889 -194868269 + (TA)n Simple_repeat Simple_repeat 2 52 0 294 291 12 0 chr3 23168889 23168975 -194868183 - MER5A DNA MER1_type -53 136 50 616 304 22 6 chr3 23169235 23169416 -194867742 + MIR SINE MIR 38 221 -41 188 244 122 65 chr3 23170036 23170159 -194866999 - L3 LINE CR1 -109 1468 1339 332 293 93 0 chr3 23171597 23171737 -194865421 + MIR SINE MIR 108 260 -2 541 273 79 32 chr3 23171823 23172039 -194865119 - MIR SINE MIR -21 241 16 820 240 57 21 chr3 23172173 23172365 -194864793 - MIR SINE MIR -44 218 20 226 311 10 39 chr3 23172444 23172547 -194864611 + MIR3 SINE MIR 57 156 -52 21 71 0 0 chr3 23173267 23173309 -194863849 + AT_rich Low_complexity Low_complexity 1 42 0 207 203 43 72 chr3 23173370 23173439 -194863719 - L2 LINE L2 -202 3070 3004 474 284 12 15 chr3 23174089 23174296 -194862862 + MIR SINE MIR 78 253 -9 339 240 354 6 chr3 23174311 23174486 -194862672 + MIR SINE MIR 21 256 -6 191 143 0 0 chr3 23174856 23174884 -194862274 - MIR SINE MIR -63 145 118 215 255 39 0 chr3 23175348 23175399 -194861759 - L2 LINE L2 -211 3061 3009 429 172 172 10 chr3 23175645 23175744 -194861414 - MIR3 SINE MIR -49 159 45 791 248 9 51 chr3 23175851 23176065 -194861093 - MIR SINE MIR -56 206 2 3665 159 56 21 chr3 23176512 23177227 -194859931 + L1MB7 LINE L1 5445 6184 0 182 156 0 89 chr3 23177586 23177631 -194859527 - MIR3 SINE MIR -52 156 116 279 0 0 0 chr3 23178254 23178285 -194858873 + (T)n Simple_repeat Simple_repeat 1 31 0 299 227 136 0 chr3 23178714 23178780 -194858378 - MIR SINE MIR -107 155 81 1847 163 7 13 chr3 23178985 23179333 -194857825 - AluJo SINE Alu 0 312 1 7225 129 17 26 chr3 23179338 23181732 -194855426 - L1MA5A LINE L1 0 6297 3911 1537 169 41 37 chr3 23181771 23182066 -194855092 - AluJb SINE Alu -12 300 5 600 229 130 61 chr3 23182421 23182652 -194854506 - MIR SINE MIR -3 259 13 192 267 129 20 chr3 23182650 23182751 -194854407 - MIR3 SINE MIR -84 124 13 * 282 262 24 12 chr3 23182853 23182937 -194854221 + (TGGG)n Simple_repeat Simple_repeat 2 86 0 558 133 0 0 chr3 23182960 23183050 -194854108 + (TGGA)n Simple_repeat Simple_repeat 2 91 0 248 213 40 53 chr3 23183174 23183249 -194853909 + L2 LINE L2 3198 3271 -1 1077 130 44 143 chr3 23183736 23183890 -194853268 - L1MA7 LINE L1 -4 6287 6183 2013 156 0 9 chr3 23183890 23184205 -194852953 + AluSx SINE Alu 1 312 0 1077 130 44 143 chr3 23184205 23184375 -194852783 - L1MA7 LINE L1 -108 6183 5998 22 0 0 0 chr3 23185260 23185282 -194851876 + AT_rich Low_complexity Low_complexity 1 22 0 1561 205 0 17 chr3 23185309 23185606 -194851552 + AluJo SINE Alu 3 294 -18 269 284 193 0 chr3 23185928 23186016 -194851142 - MIR SINE MIR -139 123 19 384 329 80 13 chr3 23186462 23186687 -194850471 - L2 LINE L2 -557 2757 2518 209 260 151 0 chr3 23187875 23187948 -194849210 - L2 LINE L2 -559 2755 2672 383 268 21 10 chr3 23188009 23188106 -194849052 + L2 LINE L2 3168 3265 -7 238 270 67 0 chr3 23188532 23188621 -194848537 - L2 LINE L2 -326 2946 2852 266 200 220 30 chr3 23189145 23189245 -194847913 + MIR SINE MIR 34 152 -110 261 277 9 54 chr3 23190088 23190200 -194846958 + C-rich Low_complexity Low_complexity 6 112 0 784 257 32 18 chr3 23190211 23190429 -194846729 - MIR SINE MIR -29 233 13 223 285 146 16 chr3 23190810 23190933 -194846225 + MIR SINE MIR 121 259 -3 533 252 83 23 chr3 23191088 23191302 -194845856 + MIR SINE MIR 8 236 -26 470 347 77 4 chr3 23191899 23192147 -194845011 - L1MC4a LINE L1 -1943 5865 5600 386 222 52 185 chr3 23193399 23193628 -194843530 - L2 LINE L2 -4 3309 3051 2205 117 0 0 chr3 23193628 23193951 -194843207 + AluY SINE Alu 1 323 0 386 222 52 185 chr3 23193951 23194040 -194843118 - L2 LINE L2 -262 3051 2952 3362 195 11 1 chr3 23194040 23194696 -194842462 - L1MB3 LINE L1 -7 6176 5515 386 222 52 185 chr3 23194696 23194932 -194842226 - L2 LINE L2 -361 2952 2826 355 319 226 12 chr3 23195625 23195948 -194841210 + L2 LINE L2 2922 3313 0 294 265 191 34 chr3 23196534 23196681 -194840477 + MER5A DNA MER1_type 11 180 -9 4784 172 14 43 chr3 23196950 23197893 -194839265 - MER49 LTR ERV1 -2 921 7 205 321 50 13 chr3 23197966 23198125 -194839033 - L2 LINE L2 -209 3063 2899 2310 91 24 0 chr3 23198339 23198637 -194838521 - AluSx SINE Alu -7 305 1 1534 193 22 19 chr3 23198643 23198852 -194838306 + L1MB1 LINE L1 5736 5948 -241 1692 126 103 19 chr3 23198852 23199123 -194838035 + AluJo SINE Alu 1 294 -18 1534 193 22 19 chr3 23199123 23199224 -194837934 + L1MB1 LINE L1 5948 6047 -142 244 323 0 0 chr3 23199261 23199326 -194837832 - MIR SINE MIR -108 100 36 1625 196 50 12 chr3 23200931 23201137 -194836021 - Charlie1 DNA MER1_type 0 2761 2564 243 0 0 0 chr3 23201137 23201164 -194835994 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1625 196 50 12 chr3 23201164 23201361 -194835797 - Charlie1 DNA MER1_type -197 2564 2343 313 274 89 15 chr3 23202138 23202273 -194834885 - MIR3 SINE MIR -59 149 5 530 271 43 24 chr3 23202346 23202382 -194834776 - L2 LINE L2 -182 3131 3097 760 206 21 82 chr3 23202382 23202615 -194834543 + MER20 DNA MER1_type 1 219 0 530 271 43 24 chr3 23202615 23202785 -194834373 - L2 LINE L2 -216 3097 2921 312 316 33 33 chr3 23202823 23202975 -194834183 - MIR SINE MIR -110 152 1 512 247 64 82 chr3 23203111 23203341 -194833817 - MIR SINE MIR 0 262 36 2118 82 67 11 chr3 23203341 23203623 -194833535 - AluSg SINE Alu -12 298 1 512 247 64 82 chr3 23203623 23203659 -194833499 - MIR SINE MIR -226 36 1 209 33 33 0 chr3 23204182 23204212 -194832946 + (CTCA)n Simple_repeat Simple_repeat 2 32 0 476 288 157 36 chr3 23204237 23204511 -194832647 - L2 LINE L2 -50 3222 2916 447 235 145 66 chr3 23204595 23204681 -194832477 - MIR SINE MIR -17 245 167 1934 157 0 37 chr3 23204681 23205005 -194832153 + AluJo SINE Alu 1 312 0 447 235 145 66 chr3 23205005 23205084 -194832074 - MIR SINE MIR -95 167 67 230 238 0 16 chr3 23205708 23205771 -194831387 + (TG)n Simple_repeat Simple_repeat 1 62 0 336 228 129 0 chr3 23206344 23206445 -194830713 - MIR SINE MIR -65 143 30 2415 94 0 0 chr3 23207032 23207331 -194829827 + AluSx SINE Alu 1 299 -13 691 213 71 30 chr3 23207776 23207945 -194829213 + MER58C DNA MER1_type 40 215 0 268 317 19 0 chr3 23208005 23208109 -194829049 + (TCCA)n Simple_repeat Simple_repeat 1 106 0 245 208 13 0 chr3 23208135 23208212 -194828946 + (TCCA)n Simple_repeat Simple_repeat 3 80 0 220 324 123 39 chr3 23208468 23208672 -194828486 - L2 LINE L2 -223 3049 2829 413 275 170 5 chr3 23208987 23209187 -194827971 + L2 LINE L2 2804 3036 -277 974 199 36 55 chr3 23209187 23209386 -194827772 - MLT1G1 LTR MaLR -26 557 367 1977 174 79 15 chr3 23209386 23209789 -194827369 + LTR3 LTR ERVK 1 429 -3 1856 174 67 11 chr3 23209802 23210159 -194826999 - LTR3 LTR ERVK -55 377 1 1861 226 10 13 chr3 23210162 23210551 -194826607 - MLT1G1 LTR MaLR -207 388 1 731 290 74 30 chr3 23210571 23210909 -194826249 - MLT1J LTR MaLR 0 511 159 318 256 157 31 chr3 23210958 23211213 -194825945 - MLT1H LTR MaLR -120 289 40 1527 221 62 44 chr3 23211322 23211819 -194825339 - L1M4 LINE L1 -3186 2960 2455 384 301 90 8 chr3 23211820 23211953 -194825205 + L2 LINE L2 3127 3270 -2 960 161 56 0 chr3 23212013 23212174 -194824984 + FAM SINE Alu 1 170 -5 289 324 110 45 chr3 23212209 23212499 -194824659 - L2 LINE L2 -61 3211 2903 1835 158 17 24 chr3 23212500 23212798 -194824360 + AluJo SINE Alu 1 296 -16 223 271 0 0 chr3 23212798 23212846 -194824312 - MER5B DNA MER1_type -54 124 77 184 379 68 15 chr3 23213270 23213402 -194823756 - L2 LINE L2 -157 3115 2977 833 191 21 46 chr3 23213449 23213643 -194823515 + MER5A DNA MER1_type 1 189 0 1906 250 149 16 chr3 23213814 23214594 -194822564 - L1ME3 LINE L1 -72 6090 5204 248 283 189 84 chr3 23214595 23214606 -194822552 + L2 LINE L2 2862 2870 -402 472 212 0 9 chr3 23214606 23214719 -194822439 - L1MB8 LINE L1 0 6178 6067 248 283 189 84 chr3 23214719 23215078 -194822080 + L2 LINE L2 2870 3271 -1 338 194 50 4 chr3 23215535 23215636 -194821522 - MIR SINE MIR -62 146 49 363 203 0 0 chr3 23216495 23216574 -194820584 + CT-rich Low_complexity Low_complexity 1 79 0 1804 171 26 16 chr3 23216810 23217115 -194820043 - AluJb SINE Alu -4 308 1 2370 112 0 3 chr3 23217152 23217464 -194819694 + AluSq SINE Alu 1 311 -2 4944 156 24 37 chr3 23217783 23217952 -194819206 - L1MA4 LINE L1 0 6300 6130 197 33 33 0 chr3 23217952 23217982 -194819176 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1749 177 18 3 chr3 23217982 23218264 -194818894 - AluJo SINE Alu -26 286 1 4944 156 24 37 chr3 23218264 23218359 -194818799 - L1MA4 LINE L1 -169 6131 6036 2334 111 0 9 chr3 23218359 23218674 -194818484 - AluSx SINE Alu 0 312 1 4944 156 24 37 chr3 23218674 23219122 -194818036 - L1MA4 LINE L1 -264 6036 5584 1646 131 32 12 chr3 23219122 23219374 -194817784 - AluJo SINE Alu -2 310 54 4944 156 24 37 chr3 23219374 23220156 -194817002 - L1MA4 LINE L1 -716 5584 4819 1634 184 28 0 chr3 23220178 23220460 -194816698 - AluJb SINE Alu 0 312 23 3292 144 15 7 chr3 23220476 23221087 -194816071 + L1 LINE L1 4216 4831 -1315 2407 94 0 0 chr3 23221088 23221387 -194815771 - AluSp SINE Alu -14 299 1 25 0 0 0 chr3 23221392 23221417 -194815741 + AT_rich Low_complexity Low_complexity 1 25 0 430 284 88 7 chr3 23222352 23222500 -194814658 - MIR SINE MIR -87 175 16 303 304 159 7 chr3 23223724 23224013 -194813145 + L2 LINE L2 1857 2189 -1125 1272 269 122 2 chr3 23224203 23224620 -194812538 - L2 LINE L2 0 3313 2847 217 248 284 18 chr3 23224706 23224815 -194812343 + L2 LINE L2 3133 3270 -2 304 258 30 60 chr3 23225425 23225553 -194811605 - MIR SINE MIR -44 164 39 182 239 156 28 chr3 23225796 23225905 -194811253 + MIR SINE MIR 28 150 -112 317 343 35 12 chr3 23225913 23226082 -194811076 + MER5A DNA MER1_type 16 188 -1 274 340 0 0 chr3 23226232 23226326 -194810832 + MER117 DNA MER1_type 68 161 -36 217 234 43 0 chr3 23226415 23226462 -194810696 - L2 LINE L2 -19 3294 3246 2355 116 0 0 chr3 23226616 23226917 -194810241 + AluSx SINE Alu 1 301 -11 797 175 31 6 chr3 23227690 23227850 -194809308 - L1MB3 LINE L1 -62 6121 5958 506 200 67 7 chr3 23227861 23227971 -194809187 - L1MC3 LINE L1 0 7785 7664 198 0 0 0 chr3 23227971 23227993 -194809165 + (TTA)n Simple_repeat Simple_repeat 3 24 0 506 200 67 7 chr3 23227993 23228017 -194809141 - L1MC3 LINE L1 -121 7664 7643 * 2926 28 0 6 chr3 23227995 23228351 -194808807 - L1PA3 LINE L1 -26 6129 5776 * 4863 200 28 27 chr3 23228333 23229447 -194807711 - L1MC3 LINE L1 -115 7670 6556 584 172 115 8 chr3 23229447 23229569 -194807589 - FLAM_C SINE Alu -7 136 2 600 178 139 0 chr3 23229569 23229743 -194807415 - L1MC3 LINE L1 -1224 6561 6415 * 678 260 60 42 chr3 23229736 23230067 -194807091 - L1MCc LINE L1 -4750 2372 2036 * 1460 256 74 50 chr3 23230065 23230848 -194806310 - L1MCc LINE L1 -4887 1536 920 1692 236 32 5 chr3 23231166 23231573 -194805585 - L1MCc LINE L1 -5988 435 18 785 127 25 45 chr3 23233062 23233219 -194803939 - Ricksha DNA DNA -1 3245 3092 2172 93 21 4 chr3 23233221 23233532 -194803626 + AluSg SINE Alu 1 316 0 324 161 0 0 chr3 23233538 23233600 -194803558 + (TTCA)n Simple_repeat Simple_repeat 4 65 0 285 29 0 0 chr3 23233718 23233752 -194803406 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 2138 90 32 0 chr3 23233752 23234029 -194803129 - AluSp SINE Alu -26 287 2 3314 143 11 55 chr3 23234029 23234511 -194802647 - Ricksha DNA DNA -145 3106 2657 2301 105 6 22 chr3 23234511 23234824 -194802334 - AluSg SINE Alu 0 310 3 3314 143 11 55 chr3 23234824 23234976 -194802182 - Ricksha DNA DNA -594 2657 2500 1113 190 22 9 chr3 23234974 23235182 -194801976 - Ricksha DNA DNA -844 410 206 * 462 252 96 0 chr3 23235182 23235297 -194801861 - FLAM_A SINE Alu -7 126 1 1113 190 22 9 chr3 23235297 23235402 -194801756 - Ricksha DNA DNA -1048 206 1 282 282 81 27 chr3 23235931 23236080 -194801078 - MIR3 SINE MIR -36 172 16 208 260 221 31 chr3 23236396 23236523 -194800635 - L2 LINE L2 -14 3258 3108 303 321 50 0 chr3 23236674 23236814 -194800344 - L2 LINE L2 -228 3044 2898 236 284 30 0 chr3 23237307 23237374 -194799784 - L3 LINE CR1 -106 1471 1403 2182 122 0 3 chr3 23237517 23237812 -194799346 + AluSg SINE Alu 1 294 -16 197 313 174 31 chr3 23237855 23238050 -194799108 + MIR SINE MIR 36 258 -4 296 261 14 11 chr3 23238244 23238349 -194798809 + MIR SINE MIR 40 147 -61 315 294 22 0 chr3 23239480 23239572 -194797586 + MIR SINE MIR 60 153 -109 565 235 37 0 chr3 23239710 23239846 -194797312 + MER58A DNA MER1_type 1 141 0 181 326 54 22 chr3 23240973 23241065 -194796093 - MIR SINE MIR -118 144 50 338 242 126 0 chr3 23241189 23241284 -194795874 - L2 LINE L2 -2 3311 3205 1797 256 24 28 chr3 23241314 23241846 -194795312 - L1ME2 LINE L1 -9 6155 5626 2220 154 104 9 chr3 23242418 23242871 -194794287 - L1MB3 LINE L1 0 6183 5688 1900 164 19 43 chr3 23244061 23244099 -194793059 - MLT1A1 LTR MaLR 0 365 328 2527 68 0 0 chr3 23244099 23244408 -194792750 + AluY SINE Alu 1 309 -2 1900 164 19 43 chr3 23244408 23244741 -194792417 - MLT1A1 LTR MaLR -37 328 3 826 159 0 0 chr3 23245141 23245267 -194791891 + FLAM_C SINE Alu 5 130 -3 222 241 111 28 chr3 23245511 23245619 -194791539 - MIR SINE MIR -144 118 2 214 239 42 14 chr3 23245642 23245713 -194791445 - L2 LINE L2 -181 3091 3019 220 229 33 16 chr3 23249083 23249144 -194788014 + CT-rich Low_complexity Low_complexity 5 66 0 2402 88 0 7 chr3 23249582 23249890 -194787268 + AluSc SINE Alu 1 306 -3 337 301 15 29 chr3 23250182 23250318 -194786840 - MIR SINE MIR -115 147 14 763 126 59 0 chr3 23252107 23252226 -194784932 + AluJb SINE Alu 2 127 -185 261 0 0 0 chr3 23252227 23252256 -194784902 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 1665 180 7 17 chr3 23252528 23252694 -194784464 - AluJo SINE Alu -15 297 134 2500 75 3 7 chr3 23252694 23253001 -194784157 - AluSc SINE Alu -3 306 1 1665 180 7 17 chr3 23253001 23253134 -194784024 - AluJo SINE Alu -178 134 1 25 51 0 0 chr3 23253147 23253186 -194783972 + AT_rich Low_complexity Low_complexity 1 39 0 2059 133 7 0 chr3 23253225 23253511 -194783647 + AluSx SINE Alu 1 288 -24 4575 201 82 39 chr3 23253682 23255089 -194782069 - L1ME2 LINE L1 0 6334 4569 1603 136 38 38 chr3 23255089 23255376 -194781782 + AluSx SINE Alu 11 297 -15 4575 201 82 39 chr3 23255376 23256072 -194781086 - L1ME2 LINE L1 -1765 4569 3905 21 0 0 0 chr3 23256094 23256115 -194781043 + AT_rich Low_complexity Low_complexity 1 21 0 646 225 0 0 chr3 23256130 23256250 -194780908 - FLAM_A SINE Alu -22 120 1 393 220 155 24 chr3 23256628 23256783 -194780375 + MIR SINE MIR 36 205 -57 2287 88 0 0 chr3 23256862 23257145 -194780013 - AluSx SINE Alu -29 283 1 1830 174 24 0 chr3 23260289 23260583 -194776575 + AluJo SINE Alu 1 301 -11 1425 151 132 8 chr3 23260929 23261180 -194775978 + AluJo SINE Alu 1 282 -30 1985 139 27 3 chr3 23261600 23261901 -194775257 - AluJb SINE Alu 0 312 5 367 270 88 0 chr3 23262686 23262823 -194774335 - MIR SINE MIR -51 211 63 1332 117 68 9 chr3 23263382 23263604 -194773554 - MER46A DNA MER2_type 0 236 2 197 301 19 39 chr3 23264086 23264189 -194772969 - MER5B DNA MER1_type -69 109 9 222 308 10 39 chr3 23264435 23264539 -194772619 - MER5B DNA MER1_type -69 109 9 243 156 429 0 chr3 23266089 23266166 -194770992 + MLT1G3 LTR MaLR 220 329 -201 237 243 57 0 chr3 23266236 23266306 -194770852 + MLT1G3 LTR MaLR 520 593 -2 299 326 62 31 chr3 23267355 23267484 -194769674 + MIR SINE MIR 64 196 -66 1657 155 38 35 chr3 23267551 23267841 -194769317 - AluJb SINE Alu -21 291 1 241 299 91 0 chr3 23268530 23268607 -194768551 - L2 LINE L2 -3 3269 3186 252 320 19 10 chr3 23268803 23268906 -194768252 + MER5B DNA MER1_type 1 104 -74 185 330 85 9 chr3 23269353 23269459 -194767699 + MIR SINE MIR 10 123 -139 835 111 0 76 chr3 23269677 23269791 -194767367 + AluJo/FLAM SINE Alu 1 103 -199 2065 113 20 10 chr3 23269791 23270084 -194767074 - AluSq SINE Alu -17 296 1 835 111 0 76 chr3 23270084 23270113 -194767045 + AluJo/FLAM SINE Alu 103 133 -169 8380 97 60 11 chr3 23270184 23271402 -194765756 - HSMAR1 DNA Mariner 0 1287 11 21 0 0 0 chr3 23272547 23272568 -194764590 + GC_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 23272645 23272669 -194764489 + GC_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr3 23272717 23272742 -194764416 + GC_rich Low_complexity Low_complexity 1 25 0 228 218 8 73 chr3 23272791 23272915 -194764243 + C-rich Low_complexity Low_complexity 5 120 0 27 62 0 0 chr3 23272925 23272973 -194764185 + GC_rich Low_complexity Low_complexity 1 48 0 25 65 0 0 chr3 23273036 23273082 -194764076 + GC_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr3 23273138 23273159 -194763999 + GC_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr3 23273169 23273211 -194763947 + GC_rich Low_complexity Low_complexity 1 42 0 233 141 0 59 chr3 23273657 23273742 -194763416 + (CGGGGG)n Simple_repeat Simple_repeat 3 82 0 387 288 250 16 chr3 23274224 23274540 -194762618 - L2 LINE L2 -52 3261 2872 231 191 101 45 chr3 23274763 23274852 -194762306 - L2 LINE L2 -5 3267 3174 296 51 0 26 chr3 23274868 23274931 -194762227 - Alu SINE Alu 0 309 248 485 265 118 6 chr3 23275049 23275219 -194761939 + MIR SINE MIR 74 262 0 350 274 236 27 chr3 23275649 23275908 -194761250 + L2 LINE L2 2997 3309 -4 21 107 0 0 chr3 23276504 23276588 -194760570 + AT_rich Low_complexity Low_complexity 1 84 0 2339 76 16 0 chr3 23276853 23277156 -194760002 - AluY SINE Alu -2 309 2 202 254 149 0 chr3 23277597 23277664 -194759494 - L3 LINE CR1 -4 1573 1497 2442 74 0 3 chr3 23278725 23279023 -194758135 + AluSg SINE Alu 1 297 -13 34 42 0 0 chr3 23279355 23279403 -194757755 + AT_rich Low_complexity Low_complexity 1 48 0 24 85 0 0 chr3 23279440 23279499 -194757659 + AT_rich Low_complexity Low_complexity 1 59 0 1271 230 103 59 chr3 23279519 23279946 -194757212 + L1ME3A LINE L1 5671 6122 -48 2020 132 3 3 chr3 23279946 23280242 -194756916 - AluSx SINE Alu -16 296 1 1271 230 103 59 chr3 23280242 23280288 -194756870 + L1ME3A LINE L1 6122 6165 -5 312 305 58 13 chr3 23280626 23280780 -194756378 + MIR SINE MIR 29 189 -73 2165 117 13 3 chr3 23281642 23281951 -194755207 - AluSp SINE Alu -1 312 1 316 128 0 0 chr3 23282696 23282743 -194754415 - FLAM SINE Alu -2 131 85 322 335 95 62 chr3 23283002 23283390 -194753768 + L2 LINE L2 2851 3251 -21 2313 84 0 0 chr3 23283807 23284092 -194753066 + AluSc SINE Alu 1 285 -24 773 280 52 70 chr3 23284840 23285422 -194751736 + L1M4 LINE L1 4698 5268 -878 180 0 0 0 chr3 23287767 23287787 -194749371 + (T)n Simple_repeat Simple_repeat 1 20 0 228 304 51 13 chr3 23287968 23288047 -194749111 - L2 LINE L2 -5 3267 3186 439 288 74 6 chr3 23288368 23288531 -194748627 - MIR SINE MIR -74 188 15 2195 59 7 7 chr3 23288573 23288846 -194748312 - AluY SINE Alu -3 308 36 23 0 0 0 chr3 23289093 23289116 -194748042 + AT_rich Low_complexity Low_complexity 1 23 0 4665 137 62 32 chr3 23289167 23289617 -194747541 - MER6 DNA MER2_type -4 861 375 2295 79 6 29 chr3 23289617 23289933 -194747225 - AluY SINE Alu -2 309 1 4665 137 62 32 chr3 23289933 23290288 -194746870 - MER6 DNA MER2_type -490 375 32 216 0 0 0 chr3 23290634 23290658 -194746500 + (A)n Simple_repeat Simple_repeat 1 24 0 2231 100 0 22 chr3 23290761 23291080 -194746078 - AluSq SINE Alu -1 312 1 1061 141 5 32 chr3 23291519 23291704 -194745454 + AluJo SINE Alu 108 287 -25 461 227 0 0 chr3 23291924 23292012 -194745146 + MIR SINE MIR 1 88 -174 1558 248 22 2 chr3 23292012 23292476 -194744682 - L1M4 LINE L1 -2533 3613 3141 647 183 25 0 chr3 23292477 23292597 -194744561 + L1M4 LINE L1 5428 5550 -634 7970 11 5 1 chr3 23292841 23294256 -194742902 + L1PA3 LINE L1 4734 6151 -4 2259 114 10 0 chr3 23294352 23294651 -194742507 - AluSg SINE Alu -8 302 1 278 265 117 85 chr3 23295143 23295366 -194741792 - HAL1 LINE L1 0 2507 2278 4149 132 54 36 chr3 23295426 23295947 -194741211 - L1MB3 LINE L1 -2 6181 5640 1948 148 53 31 chr3 23295947 23296225 -194740933 + MER47A DNA MER2_type 1 290 -2033 2319 109 3 0 chr3 23296225 23296528 -194740630 - AluSx SINE Alu -8 304 1 1948 148 53 31 chr3 23296528 23296607 -194740551 + MER47A DNA MER2_type 290 366 0 4149 132 54 36 chr3 23296607 23296868 -194740290 - L1MB3 LINE L1 -543 5640 5385 2528 77 0 3 chr3 23296910 23297220 -194739938 - AluSp SINE Alu -4 309 1 2086 146 3 0 chr3 23297275 23297584 -194739574 - AluSx SINE Alu -2 310 1 2278 203 24 34 chr3 23297584 23297737 -194739421 - L1MB3 LINE L1 -750 5396 5243 2621 140 34 0 chr3 23297737 23298151 -194739007 - MSTA LTR MaLR 0 428 1 2278 203 24 34 chr3 23298151 23298347 -194738811 - L1MB3 LINE L1 -903 5243 5047 1660 172 7 28 chr3 23298347 23298638 -194738520 - AluJo SINE Alu -21 291 7 2278 203 24 34 chr3 23298638 23298883 -194738275 - L1MB3 LINE L1 -1099 5047 4807 289 94 16 62 chr3 23298882 23298946 -194738212 - L1MB2 LINE L1 0 6171 6111 * 429 279 10 0 chr3 23298947 23299051 -194738107 - Tigger5 DNA MER2_type 0 2323 2219 268 200 40 0 chr3 23299046 23299096 -194738062 - Tigger5 DNA MER2_type -2270 53 2 * 1361 142 61 4 chr3 23299098 23299345 -194737813 - L1MB2 LINE L1 -59 6112 5852 5289 202 36 69 chr3 23299347 23299708 -194737450 - L1MB3 LINE L1 -1340 4806 4435 2214 128 7 0 chr3 23299708 23300014 -194737144 - AluSx SINE Alu -4 308 1 5289 202 36 69 chr3 23300014 23301051 -194736107 - L1MB3 LINE L1 -1711 4435 3463 879 158 0 0 chr3 23301051 23301184 -194735974 - FLAM_C SINE Alu 0 133 1 5289 202 36 69 chr3 23301184 23301353 -194735805 - L1MB3 LINE L1 -2683 3463 3290 229 209 70 35 chr3 23301388 23301474 -194735684 - HAL1 LINE L1 -289 2218 2130 1695 255 45 44 chr3 23301492 23302313 -194734845 - HAL1 LINE L1 -525 1982 1128 394 250 122 0 chr3 23302316 23302464 -194734694 + MIR SINE MIR 53 218 -44 482 244 98 33 chr3 23302516 23302790 -194734368 - HAL1 LINE L1 -1398 1109 818 1925 135 57 3 chr3 23302793 23303089 -194734069 + AluSx SINE Alu 1 312 0 267 145 158 53 chr3 23303106 23303182 -194733976 + AluJ/FRAM SINE Alu 219 302 0 1837 150 85 18 chr3 23303306 23303646 -194733512 - MER47A DNA MER2_type 0 366 4 531 284 74 65 chr3 23304021 23304373 -194732785 - HAL1 LINE L1 -2152 355 1 725 307 77 33 chr3 23304452 23305013 -194732145 - L2 LINE L2 0 3313 2714 1546 179 7 48 chr3 23305282 23305573 -194731585 - AluJo SINE Alu -33 279 1 194 235 99 37 chr3 23306208 23306289 -194730869 - MIR SINE MIR -1 261 176 756 188 0 8 chr3 23306299 23306432 -194730726 + AluJb SINE Alu 5 136 -176 2428 86 0 0 chr3 23306432 23306734 -194730424 + AluY SINE Alu 1 302 -9 1999 179 32 23 chr3 23306738 23307205 -194729953 - MLT2A2 LTR ERVL -66 488 8 1088 178 9 28 chr3 23307206 23307419 -194729739 - AluJo SINE Alu -41 271 63 1405 247 176 61 chr3 23307443 23308078 -194729080 - L1M4 LINE L1 -1495 4651 4090 2169 126 53 0 chr3 23308078 23308420 -194728738 - L1MA3 LINE L1 0 6305 5946 1405 247 176 61 chr3 23308420 23308573 -194728585 - L1M4 LINE L1 -2056 4090 3956 297 0 0 0 chr3 23308573 23308606 -194728552 + (CA)n Simple_repeat Simple_repeat 2 34 0 1405 247 176 61 chr3 23308606 23308987 -194728171 - L1M4 LINE L1 -2190 3956 3620 2476 87 3 0 chr3 23308987 23309298 -194727860 - AluSp SINE Alu -1 312 1 1405 247 176 61 chr3 23309298 23309588 -194727570 - L1M4 LINE L1 -2526 3620 2974 * 3262 193 48 8 chr3 23309581 23310525 -194726633 - L1ME1 LINE L1 -175 5991 5010 318 274 38 65 chr3 23310866 23311052 -194726106 - L1ME LINE L1 -349 5772 5592 698 235 60 20 chr3 23311178 23311429 -194725729 - MER20B DNA MER1_type -1 782 522 1890 176 0 0 chr3 23312186 23312493 -194724665 - AluJo SINE Alu -5 307 1 563 280 80 40 chr3 23312665 23312915 -194724243 + L2 LINE L2 3054 3313 0 272 233 123 14 chr3 23313235 23313308 -194723850 - LTR67 LTR ERVL -104 453 373 187 352 56 0 chr3 23314258 23314329 -194722829 + MIR SINE MIR 38 112 -96 1560 164 24 45 chr3 23314623 23314760 -194722398 + AluJb SINE Alu 1 139 -173 2205 105 30 3 chr3 23314760 23315064 -194722094 + AluSq SINE Alu 1 312 -1 1560 164 24 45 chr3 23315064 23315213 -194721945 + AluJb SINE Alu 139 281 -31 1741 170 6 25 chr3 23316864 23317182 -194719976 - AluJo SINE Alu 0 312 1 190 234 0 0 chr3 23317606 23317653 -194719505 - L2 LINE L2 -5 3308 3262 224 276 0 58 chr3 23317691 23317778 -194719380 - L2 LINE L2 -160 3112 3031 2403 96 0 0 chr3 23318282 23318583 -194718575 + AluSq SINE Alu 1 301 -12 337 285 75 65 chr3 23319308 23319522 -194717636 - L1ME3A LINE L1 -5 6165 5950 2253 123 0 0 chr3 23319549 23319850 -194717308 - AluSc SINE Alu -8 301 1 23 0 0 0 chr3 23319854 23319877 -194717281 + AT_rich Low_complexity Low_complexity 1 23 0 7771 92 64 12 chr3 23319998 23321121 -194716037 - HSMAR1 DNA Mariner -96 1191 11 21 0 0 0 chr3 23322266 23322287 -194714871 + GC_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 23322364 23322388 -194714770 + GC_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr3 23322436 23322461 -194714697 + GC_rich Low_complexity Low_complexity 1 25 0 228 218 8 73 chr3 23322510 23322634 -194714524 + C-rich Low_complexity Low_complexity 5 120 0 27 62 0 0 chr3 23322644 23322692 -194714466 + GC_rich Low_complexity Low_complexity 1 48 0 25 65 0 0 chr3 23322755 23322801 -194714357 + GC_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr3 23322857 23322878 -194714280 + GC_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr3 23322888 23322930 -194714228 + GC_rich Low_complexity Low_complexity 1 42 0 233 141 0 59 chr3 23323376 23323461 -194713697 + (CGGGGG)n Simple_repeat Simple_repeat 3 82 0 387 288 250 16 chr3 23323943 23324259 -194712899 - L2 LINE L2 -52 3261 2872 231 191 101 45 chr3 23324482 23324571 -194712587 - L2 LINE L2 -5 3267 3174 296 51 0 26 chr3 23324587 23324650 -194712508 - Alu SINE Alu 0 309 248 461 241 131 7 chr3 23324768 23324913 -194712245 + MIR SINE MIR 74 236 -26 350 274 236 27 chr3 23325368 23325627 -194711531 + L2 LINE L2 2997 3309 -4 21 107 0 0 chr3 23326223 23326307 -194710851 + AT_rich Low_complexity Low_complexity 1 84 0 2339 76 16 0 chr3 23326572 23326875 -194710283 - AluY SINE Alu -2 309 2 202 254 149 0 chr3 23327316 23327383 -194709775 - L3 LINE CR1 -4 1573 1497 2442 74 0 3 chr3 23328444 23328742 -194708416 + AluSg SINE Alu 1 297 -13 34 42 0 0 chr3 23329074 23329122 -194708036 + AT_rich Low_complexity Low_complexity 1 48 0 24 85 0 0 chr3 23329159 23329218 -194707940 + AT_rich Low_complexity Low_complexity 1 59 0 1231 232 115 40 chr3 23329238 23329664 -194707494 + L1ME3A LINE L1 5671 6128 -42 2030 128 3 7 chr3 23329665 23329962 -194707196 - AluSx SINE Alu -16 296 1 912 94 39 0 chr3 23329967 23330094 -194707064 - AluSq/x SINE Alu -181 132 1 307 252 65 24 chr3 23330110 23330233 -194706925 + MIR SINE MIR 75 202 -60 1889 142 11 3 chr3 23330414 23330696 -194706462 - AluJo SINE Alu -28 284 1 225 0 0 0 chr3 23332042 23332067 -194705091 + (A)n Simple_repeat Simple_repeat 1 25 0 337 87 32 16 chr3 23332359 23332427 -194704731 - MIR SINE MIR -66 142 73 2151 123 7 3 chr3 23333677 23333970 -194703188 + AluSx SINE Alu 1 294 -18 1376 143 0 78 chr3 23334066 23334310 -194702848 + AluJo SINE Alu 33 257 -55 212 196 0 59 chr3 23334482 23334533 -194702625 + L3 LINE CR1 1290 1337 -240 2083 145 3 0 chr3 23334857 23335161 -194701997 - AluSx SINE Alu -7 305 1 855 144 0 0 chr3 23335545 23335663 -194701495 - AluSq/x SINE Alu -193 119 2 294 151 0 58 chr3 23335740 23335826 -194701332 + CT-rich Low_complexity Low_complexity 4 84 0 542 217 7 43 chr3 23335829 23335855 -194701303 - FLAM_C SINE Alu -169 133 108 484 29 43 0 chr3 23335855 23335924 -194701234 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 542 217 7 43 chr3 23335924 23336035 -194701123 - FLAM_C SINE Alu -194 108 1 346 289 47 8 chr3 23336040 23336168 -194700990 - MIR SINE MIR -74 188 56 879 114 0 15 chr3 23336466 23336597 -194700561 + FLAM_C SINE Alu 5 133 0 1605 170 69 58 chr3 23337216 23337547 -194699611 + L1MD2 LINE L1 5093 5419 -940 2027 130 27 3 chr3 23337547 23337840 -194699318 + AluSx SINE Alu 1 300 -12 1704 169 0 0 chr3 23337841 23338114 -194699044 + AluJo SINE Alu 33 305 -7 1605 170 69 58 chr3 23338114 23338341 -194698817 + L1MD2 LINE L1 5418 6169 -190 * 1697 143 6 57 chr3 23338328 23338408 -194698750 + L1MB8 LINE L1 5727 5809 -369 2112 108 0 39 chr3 23338408 23338542 -194698616 + AluSq SINE Alu 1 139 -174 2367 76 0 3 chr3 23338542 23338832 -194698326 + AluSg SINE Alu 1 289 -21 2112 108 0 39 chr3 23338832 23339002 -194698156 + AluSq SINE Alu 139 293 -20 1697 143 6 57 chr3 23339002 23339257 -194697901 + L1MB8 LINE L1 5809 6045 -133 983 137 0 14 chr3 23339936 23340082 -194697076 - AluJb SINE Alu -31 281 138 2334 112 26 0 chr3 23340085 23340389 -194696769 - AluSq SINE Alu -1 312 1 563 221 0 38 chr3 23340523 23340654 -194696504 + AluSg/x SINE Alu 87 212 -100 203 290 0 16 chr3 23340850 23340912 -194696246 + CT-rich Low_complexity Low_complexity 3 63 0 766 221 50 15 chr3 23341140 23341339 -194695819 - MIR SINE MIR -49 213 8 1111 170 13 52 chr3 23341478 23341707 -194695451 - AluJo SINE Alu -15 297 78 2218 113 3 3 chr3 23343236 23343536 -194693622 + AluSx SINE Alu 2 301 -11 2432 135 107 9 chr3 23344424 23344862 -194692296 + L1MB3 LINE L1 5703 6183 0 354 263 51 34 chr3 23346252 23346370 -194690788 + L2 LINE L2 3133 3252 -20 2121 103 7 7 chr3 23346811 23347112 -194690046 + AluY SINE Alu 1 301 -10 2720 181 60 22 chr3 23347112 23347374 -194689784 + L1MB7 LINE L1 4494 4744 -1402 3578 140 29 27 chr3 23347374 23348039 -194689119 + L1MA7 LINE L1 5621 6286 -5 2720 181 60 22 chr3 23348039 23348421 -194688737 + L1MB7 LINE L1 4744 5163 -983 819 214 0 42 chr3 23348421 23348589 -194688569 - AluJb SINE Alu -21 291 131 2265 87 3 0 chr3 23348592 23348892 -194688266 - AluSp SINE Alu -12 301 1 1429 164 38 24 chr3 23348902 23349194 -194687964 - AluJb SINE Alu -13 299 4 4700 157 80 6 chr3 23349199 23350142 -194687016 + L1MB7 LINE L1 5153 6165 -19 1864 150 49 15 chr3 23350543 23350870 -194686288 - MER7A DNA MER2_type 0 346 11 2172 76 28 0 chr3 23351065 23351356 -194685802 + AluY SINE Alu 1 299 -12 3220 165 66 10 chr3 23351617 23352233 -194684925 + L1MB8 LINE L1 5010 5692 -486 216 0 0 0 chr3 23352233 23352257 -194684901 + (CA)n Simple_repeat Simple_repeat 2 25 0 3220 165 66 10 chr3 23352257 23352507 -194684651 + L1MB8 LINE L1 5692 5926 -252 1214 145 23 9 chr3 23352675 23352896 -194684262 - AluJo SINE Alu -2 310 87 2033 108 28 0 chr3 23353031 23353318 -194683840 + AluSx SINE Alu 1 295 -17 282 29 0 0 chr3 23353397 23353432 -194683726 + (TG)n Simple_repeat Simple_repeat 2 36 0 708 207 0 21 chr3 23353432 23353563 -194683595 - FLAM_C SINE Alu -181 131 2 690 210 0 8 chr3 23353654 23353778 -194683380 + FLAM_A SINE Alu 1 123 -10 2175 87 0 34 chr3 23356060 23356381 -194680777 + AluSg SINE Alu 1 310 0 238 356 56 23 chr3 23357011 23357227 -194679931 - MARNA DNA Mariner -58 528 306 181 331 0 98 chr3 23357428 23357561 -194679597 + L2 LINE L2 2915 3034 -238 346 184 55 80 chr3 23357662 23357763 -194679395 - L1ME4a LINE L1 -4 6117 6020 1700 184 0 10 chr3 23357763 23358068 -194679090 + AluJb SINE Alu 1 302 -10 346 184 55 80 chr3 23358068 23358129 -194679029 - L1ME4a LINE L1 -101 6020 5959 288 181 178 10 chr3 23358480 23358607 -194678551 - HAL1b LINE L1 -31 1317 1191 380 355 35 60 chr3 23358620 23358902 -194678256 - L1MC4a LINE L1 -1929 5879 5605 239 222 0 67 chr3 23363246 23363336 -194673822 + (TATATG)n Simple_repeat Simple_repeat 4 87 0 828 145 0 0 chr3 23365966 23366090 -194671068 - AluJb SINE Alu -31 281 158 1801 134 17 7 chr3 23367386 23367676 -194669482 - AluJb SINE Alu -19 293 1 1937 203 24 36 chr3 23369879 23370168 -194666990 + L1ME LINE L1 4502 4784 -1362 1459 116 175 4 chr3 23370168 23370419 -194666739 + AluSg1 SINE Alu 1 294 -15 1937 203 24 36 chr3 23370419 23370622 -194666536 + L1ME LINE L1 4784 4988 -1158 828 110 0 0 chr3 23370627 23370745 -194666413 + AluSg/x SINE Alu 175 292 -20 1233 178 108 53 chr3 23370749 23371074 -194666084 + L1ME LINE L1 4987 5359 -807 2338 122 34 53 chr3 23371074 23371510 -194665648 - MSTA LTR MaLR 0 428 1 1233 178 108 53 chr3 23371510 23371733 -194665425 + L1ME LINE L1 5359 5568 -598 476 143 143 43 chr3 23371730 23371870 -194665288 + L1ME2 LINE L1 4133 4286 -1860 * 268 128 64 0 chr3 23371882 23371929 -194665229 + FAM SINE Alu 119 168 -11 977 227 103 46 chr3 23371935 23372125 -194665033 + L1ME2 LINE L1 5130 5308 -856 2485 34 0 7 chr3 23372125 23372420 -194664738 + AluY SINE Alu 1 293 -18 977 227 103 46 chr3 23372420 23372554 -194664604 + L1ME2 LINE L1 5308 5433 -731 1718 200 101 21 chr3 23372554 23373020 -194664138 + MLT1D LTR MaLR 3 505 0 977 227 103 46 chr3 23373020 23373255 -194663903 + L1ME2 LINE L1 5433 5725 -439 1031 237 68 61 chr3 23373573 23373999 -194663159 + L1ME2 LINE L1 5735 6163 -1 335 255 50 96 chr3 23374027 23374083 -194663075 + L2 LINE L2 3085 3142 -171 1674 152 32 0 chr3 23374083 23374366 -194662792 - AluJb SINE Alu -15 297 6 335 255 50 96 chr3 23374366 23374387 -194662771 + L2 LINE L2 3142 3162 -151 2395 64 0 0 chr3 23374387 23374684 -194662474 - AluY SINE Alu -14 297 1 335 255 50 96 chr3 23374684 23374844 -194662314 + L2 LINE L2 3162 3312 -1 221 244 89 44 chr3 23375126 23375216 -194661942 - L2 LINE L2 -175 3097 3004 316 248 68 8 chr3 23375946 23376063 -194661095 + L1ME2 LINE L1 6039 6162 -2 694 241 52 94 chr3 23376152 23376427 -194660731 + HAL1 LINE L1 2042 2327 -180 1883 149 10 19 chr3 23376427 23376736 -194660422 + AluJo SINE Alu 1 306 -6 694 241 52 94 chr3 23376736 23376798 -194660360 + HAL1 LINE L1 2327 2364 -143 2387 61 3 0 chr3 23376798 23377095 -194660063 + AluY SINE Alu 2 299 -12 694 241 52 94 chr3 23377095 23377138 -194660020 + HAL1 LINE L1 2364 2407 -100 5462 79 27 15 chr3 23377380 23378236 -194658922 + SVA Other Other 1 866 -520 6318 59 33 40 chr3 23378295 23379258 -194657900 + SVA Other Other 430 1386 0 251 237 272 43 chr3 23379262 23379419 -194657739 - MIR SINE MIR 0 262 73 331 182 121 0 chr3 23379862 23379961 -194657197 + MER102a DNA MER1_type 83 193 -137 260 266 25 0 chr3 23379973 23380052 -194657106 + MER102a DNA MER1_type 220 300 -30 233 290 0 0 chr3 23380379 23380441 -194656717 + L2 LINE L2 3235 3296 -17 282 149 53 96 chr3 23380671 23380765 -194656393 + MIR SINE MIR 60 149 -113 24 0 0 0 chr3 23381065 23381089 -194656069 + GC_rich Low_complexity Low_complexity 1 24 0 1931 108 24 0 chr3 23381985 23382272 -194654886 + AluSx SINE Alu 1 294 -18 323 206 92 11 chr3 23382290 23382377 -194654781 - L1MCa LINE L1 -4592 1834 1597 1729 114 4 8 chr3 23382385 23382640 -194654518 - AluSp SINE Alu -59 254 1 1214 145 23 9 chr3 23382774 23382995 -194654163 + AluJo SINE Alu 87 310 -2 1866 104 24 17 chr3 23383285 23383439 -194653719 - AluSx SINE Alu -23 289 131 2042 118 0 3 chr3 23383439 23383735 -194653423 - AluSx SINE Alu -17 295 1 1866 104 24 17 chr3 23383735 23383867 -194653291 - AluSx SINE Alu -181 131 1 368 252 65 24 chr3 23383883 23384006 -194653152 + MIR SINE MIR 75 202 -60 1768 142 11 3 chr3 23384187 23384469 -194652689 - AluJo SINE Alu -28 284 1 225 0 0 0 chr3 23385815 23385840 -194651318 + (A)n Simple_repeat Simple_repeat 1 25 0 368 207 54 54 chr3 23386083 23386262 -194650896 - MIR3 SINE MIR -18 190 12 2024 123 7 3 chr3 23387450 23387743 -194649415 + AluSx SINE Alu 1 294 -18 1280 143 0 78 chr3 23387839 23388083 -194649075 + AluJo SINE Alu 33 257 -55 232 196 0 59 chr3 23388255 23388306 -194648852 + L3 LINE CR1 1290 1337 -240 1961 145 3 0 chr3 23388630 23388934 -194648224 - AluSx SINE Alu -7 305 1 803 144 0 0 chr3 23389318 23389436 -194647722 - AluSq/x SINE Alu -194 119 2 294 151 0 58 chr3 23389513 23389599 -194647559 + CT-rich Low_complexity Low_complexity 4 84 0 548 217 7 43 chr3 23389602 23389628 -194647530 - FLAM_C SINE Alu -169 133 108 484 29 43 0 chr3 23389628 23389697 -194647461 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 548 217 7 43 chr3 23389697 23389808 -194647350 - FLAM_C SINE Alu -194 108 1 394 273 47 8 chr3 23389813 23389941 -194647217 - MIR SINE MIR -74 188 56 884 114 0 15 chr3 23390239 23390370 -194646788 + FLAM_C SINE Alu 5 133 0 1598 170 69 58 chr3 23390989 23391320 -194645838 + L1MD2 LINE L1 5093 5419 -940 1908 130 27 3 chr3 23391320 23391613 -194645545 + AluSx SINE Alu 1 300 -12 1536 179 0 0 chr3 23391614 23391887 -194645271 + AluJo SINE Alu 33 305 -7 1598 170 69 58 chr3 23391887 23392114 -194645044 + L1MD2 LINE L1 5418 6169 -190 2330 143 11 44 chr3 23392114 23392181 -194644977 + L1MB7 LINE L1 5727 5795 -389 2015 115 0 10 chr3 23392181 23392315 -194644843 + AluSq SINE Alu 1 135 -178 2261 87 0 0 chr3 23392315 23392613 -194644545 + AluSg SINE Alu 1 298 -12 2015 115 0 10 chr3 23392613 23392774 -194644384 + AluSq SINE Alu 135 293 -20 2330 143 11 44 chr3 23392774 23393147 -194644011 + L1MB7 LINE L1 5795 6165 -19 1867 153 0 13 chr3 23393157 23393471 -194643687 + AluJb SINE Alu 1 310 -2 470 245 6 74 chr3 23393698 23393861 -194643297 + L1MD2 LINE L1 6191 6342 -17 208 283 19 0 chr3 23394073 23394126 -194643032 - MIR SINE MIR -2 260 207 766 176 23 0 chr3 23396605 23396736 -194640422 - AluJo SINE Alu -178 134 1 1874 114 83 14 chr3 23396799 23397089 -194640069 + AluSg SINE Alu 1 310 0 4251 150 52 20 chr3 23399425 23400239 -194636919 - L1MA6 LINE L1 0 6300 5461 1139 140 22 11 chr3 23400239 23400417 -194636741 - AluSg/x SINE Alu -13 297 118 2343 102 7 3 chr3 23400440 23400745 -194636413 - AluSq SINE Alu -7 306 1 872 133 0 0 chr3 23400778 23400898 -194636260 - AluSp SINE Alu -193 120 1 1224 116 43 5 chr3 23400898 23401137 -194636021 - L1MA6 LINE L1 -743 5403 5229 2241 114 0 0 chr3 23401183 23401472 -194635686 + AluSg SINE Alu 1 289 -21 2218 113 3 3 chr3 23403379 23403679 -194633479 + AluSx SINE Alu 2 301 -11 2432 135 107 9 chr3 23404567 23405005 -194632153 + L1MB3 LINE L1 5703 6183 0 314 262 48 29 chr3 23406395 23406498 -194630660 + L2 LINE L2 3133 3237 -35 2196 120 3 0 chr3 23406954 23407253 -194629905 + AluSq SINE Alu 1 300 -13 606 304 104 25 chr3 23407373 23407738 -194629420 - L2 LINE L2 0 3313 2920 261 279 90 33 chr3 23407988 23408110 -194629048 + L3 LINE CR1 1445 1573 -4 1815 152 10 23 chr3 23408123 23408426 -194628732 - AluJb SINE Alu -13 299 1 1731 175 24 0 chr3 23408751 23409043 -194628115 - AluJb SINE Alu -13 299 1 1699 209 108 12 chr3 23409365 23409791 -194627367 + MLT1C LTR MaLR 1 467 0 2358 85 0 3 chr3 23410248 23410541 -194626617 - AluSp SINE Alu -21 292 1 1848 179 3 0 chr3 23410937 23411239 -194625919 - AluJb SINE Alu -9 303 1 502 239 56 46 chr3 23411279 23411476 -194625682 + Charlie8 DNA MER1_type 83 281 -2136 232 297 33 0 chr3 23411521 23411612 -194625546 + MIR SINE MIR 56 149 -113 489 264 95 68 chr3 23411810 23412053 -194625105 - L2 LINE L2 -1 3312 3058 2410 84 0 0 chr3 23412053 23412351 -194624807 + AluY SINE Alu 1 298 -13 489 264 95 68 chr3 23412351 23412402 -194624756 - L2 LINE L2 -255 3058 3010 2191 109 10 0 chr3 23412410 23412703 -194624455 + AluSq SINE Alu 6 301 -12 251 255 29 10 chr3 23412958 23413060 -194624098 + (CATATA)n Simple_repeat Simple_repeat 3 106 0 1857 157 10 7 chr3 23413263 23413556 -194623602 - AluJb SINE Alu -18 294 1 442 161 17 145 chr3 23413557 23413788 -194623370 + L1MEc LINE L1 2390 2474 -3952 1022 174 24 0 chr3 23413793 23413960 -194623198 + FAM SINE Alu 1 43 -6 1454 158 3 101 chr3 23413963 23414291 -194622867 + AluY SINE Alu 1 296 -15 269 228 96 52 chr3 23414292 23414428 -194622730 + L1MEc LINE L1 2555 2696 -3730 901 143 0 0 chr3 23414428 23414561 -194622597 + FLAM_C SINE Alu 1 133 0 183 114 0 0 chr3 23414561 23414596 -194622562 + (CAAG)n Simple_repeat Simple_repeat 2 36 0 277 32 0 0 chr3 23414609 23414640 -194622518 + U2 snRNA snRNA 1 31 -157 395 191 46 46 chr3 23414640 23414771 -194622387 + L1MEc LINE L1 2690 2820 -3606 365 302 130 0 chr3 23414779 23414971 -194622187 - L3 LINE CR1 -802 775 559 707 272 95 9 chr3 23414992 23415224 -194621934 - MIR SINE MIR -4 258 7 1791 122 7 22 chr3 23416231 23416502 -194620656 + AluSx SINE Alu 1 267 -45 2430 93 3 0 chr3 23416523 23416835 -194620323 + AluSq SINE Alu 1 313 0 6170 189 47 40 chr3 23416850 23417563 -194619595 + L1MB7 LINE L1 3584 4291 -1855 1420 189 57 7 chr3 23417563 23417843 -194619315 + AluJo SINE Alu 1 294 -18 2380 92 3 9 chr3 23417846 23418161 -194618997 + AluSq SINE Alu 1 313 0 6170 189 47 40 chr3 23418161 23418367 -194618791 + L1MB7 LINE L1 4292 4495 -1651 2462 77 7 0 chr3 23418367 23418666 -194618492 + AluY SINE Alu 1 301 -10 6170 189 47 40 chr3 23418666 23418928 -194618230 + L1MB7 LINE L1 4495 4754 -1392 3617 140 29 27 chr3 23418928 23419593 -194617565 + L1MA7 LINE L1 5621 6286 -5 6170 189 47 40 chr3 23419593 23419975 -194617183 + L1MB7 LINE L1 4754 5163 -983 810 214 0 42 chr3 23419975 23420143 -194617015 - AluJb SINE Alu -21 291 131 2396 87 3 0 chr3 23420146 23420446 -194616712 - AluSp SINE Alu -12 301 1 1533 164 38 24 chr3 23420456 23420748 -194616410 - AluJb SINE Alu -13 299 4 4737 152 63 6 chr3 23420753 23421696 -194615462 + L1MB7 LINE L1 5153 6165 -19 1870 150 49 15 chr3 23422097 23422424 -194614734 - MER7A DNA MER2_type 0 346 11 2298 76 28 0 chr3 23422619 23422910 -194614248 + AluY SINE Alu 1 299 -12 3928 165 76 17 chr3 23423172 23423788 -194613370 + L1MB7 LINE L1 5010 5714 -470 216 0 0 0 chr3 23423788 23423812 -194613346 + (CA)n Simple_repeat Simple_repeat 2 25 0 3928 165 76 17 chr3 23423812 23424228 -194612930 + L1MB7 LINE L1 5714 6104 -80 1055 91 0 0 chr3 23424647 23424779 -194612379 - AluSp SINE Alu -181 132 1 3854 205 91 46 chr3 23424785 23425321 -194611837 - L1MCb LINE L1 -4820 1744 1233 1809 140 28 14 chr3 23425321 23425474 -194611684 - AluSx SINE Alu -18 294 134 2366 103 0 0 chr3 23425474 23425774 -194611384 - AluSg SINE Alu -10 300 1 1809 140 28 14 chr3 23425774 23425905 -194611253 - AluSx SINE Alu -178 134 6 3854 205 91 46 chr3 23425905 23426499 -194610659 - L1MCb LINE L1 -5331 1233 667 2003 147 13 16 chr3 23426499 23426812 -194610346 - AluJb SINE Alu 0 312 1 3854 205 91 46 chr3 23426812 23427319 -194609839 - L1MCb LINE L1 -5897 667 2 180 262 204 19 chr3 23427490 23427593 -194609565 + MIR SINE MIR 23 144 -118 244 297 0 77 chr3 23427881 23427972 -194609186 + MIR SINE MIR 37 120 -142 195 226 38 0 chr3 23428078 23428131 -194609027 + MIR SINE MIR 97 151 -111 2398 83 0 3 chr3 23429156 23429457 -194607701 - AluSq SINE Alu -13 300 1 2066 142 3 0 chr3 23430447 23430743 -194606415 + AluSx SINE Alu 1 297 -15 2376 76 0 3 chr3 23431058 23431349 -194605809 - AluY SINE Alu -21 290 1 853 240 42 28 chr3 23434277 23434560 -194602598 + L2 LINE L2 3019 3305 -8 861 144 0 43 chr3 23434655 23434794 -194602364 + FLAM_C SINE Alu 1 133 0 808 224 26 0 chr3 23435732 23435888 -194601270 + MER45A DNA AcHobo 1 160 -18 210 279 101 23 chr3 23436060 23436189 -194600969 + MIR SINE MIR 109 247 -15 1692 102 4 4 chr3 23436887 23437113 -194600045 + AluSg/x SINE Alu 71 296 -14 498 33 0 0 chr3 23437113 23437173 -194599985 + (TA)n Simple_repeat Simple_repeat 2 61 0 1028 190 8 101 chr3 23437436 23437610 -194599548 - MER58A DNA MER1_type -2196 224 35 3241 161 43 37 chr3 23437610 23438287 -194598871 + L1MB7 LINE L1 5485 6165 -19 1028 190 8 101 chr3 23438287 23438308 -194598850 - MER58A DNA MER1_type -2385 35 53 2482 77 0 7 chr3 23438308 23438608 -194598550 + AluSc SINE Alu 1 298 -11 1028 190 8 101 chr3 23438608 23438658 -194598500 - MER58A DNA MER1_type -2366 54 1 1933 121 0 4 chr3 23439363 23439627 -194597531 - AluSx SINE Alu -16 296 34 188 320 78 19 chr3 23441439 23441542 -194595616 + L2 LINE L2 3155 3263 -9 201 322 35 9 chr3 23441910 23442025 -194595133 + L2 LINE L2 2917 3034 -238 266 348 6 85 chr3 23442283 23442364 -194594794 + L2 LINE L2 3121 3184 -88 691 211 99 89 chr3 23442364 23442456 -194594702 + MER58C DNA MER1_type 1 91 -2329 2207 121 3 3 chr3 23442456 23442763 -194594395 - AluSx SINE Alu -5 307 1 691 211 99 89 chr3 23442763 23442883 -194594275 + MER58C DNA MER1_type 91 215 0 266 348 6 85 chr3 23442883 23442965 -194594193 + L2 LINE L2 3184 3271 -1 1111 170 13 52 chr3 23444393 23444622 -194592536 + AluJo SINE Alu 78 297 -15 766 221 50 15 chr3 23444761 23444960 -194592198 + MIR SINE MIR 8 213 -49 1404 128 46 39 chr3 23445380 23445580 -194591578 - L1MA8 LINE L1 -2 6289 6085 1893 148 24 0 chr3 23445580 23445877 -194591281 + AluSx SINE Alu 1 304 -8 1404 128 46 39 chr3 23445877 23445958 -194591200 - L1MA8 LINE L1 -206 6085 6006 2276 100 0 10 chr3 23446085 23446386 -194590772 - AluSp SINE Alu -15 298 1 565 229 0 0 chr3 23446387 23446496 -194590662 + AluJo/FRAM SINE Alu 203 311 -1 807 178 85 96 chr3 23446513 23446702 -194590456 - LTR56 LTR ERV1 -160 285 95 2104 135 3 6 chr3 23446702 23447013 -194590145 - AluJb SINE Alu -2 310 1 306 0 0 0 chr3 23447022 23447056 -194590102 + (TTTAA)n Simple_repeat Simple_repeat 3 36 0 2391 89 0 0 chr3 23447056 23447348 -194589810 - AluSx SINE Alu -20 292 1 807 178 85 96 chr3 23447348 23447428 -194589730 - LTR56 LTR ERV1 -356 89 8 2111 189 29 2 chr3 23447428 23447841 -194589317 + L1MB4 LINE L1 5753 6176 -4 1615 144 12 0 chr3 23447853 23448110 -194589048 - MER84 LTR ERVI -2 505 246 989 80 0 0 chr3 23448110 23448235 -194588923 + AluSp/q SINE Alu 177 301 -12 1699 108 8 0 chr3 23448236 23448477 -194588681 - MER84 LTR ERVI -264 243 1 409 219 169 15 chr3 23448482 23448683 -194588475 - L2 LINE L2 -423 2891 2660 508 153 138 102 chr3 23449527 23449619 -194587539 + L2 LINE L2 2371 2458 -856 1997 133 0 13 chr3 23449619 23449920 -194587238 - AluJb SINE Alu -15 297 1 508 153 138 102 chr3 23449920 23450023 -194587135 + L2 LINE L2 2458 2573 -741 3938 162 25 32 chr3 23450023 23450745 -194586413 + LTR62 LTR ERVK 1 717 -2 908 124 0 0 chr3 23451820 23451967 -194585191 + AluSg/x SINE Alu 164 310 0 1733 188 3 7 chr3 23452588 23452886 -194584272 + AluSx SINE Alu 1 297 -15 2360 86 0 0 chr3 23453817 23454107 -194583051 - AluSq SINE Alu -19 294 5 255 214 18 0 chr3 23454734 23454790 -194582368 + L2 LINE L2 3248 3304 -9 339 258 22 0 chr3 23454805 23454894 -194582264 + MIR SINE MIR 82 172 -90 580 222 89 104 chr3 23454935 23455273 -194581885 - MLT1J1 LTR MaLR -110 336 4 3058 141 9 50 chr3 23455291 23455837 -194581321 + LTR26B LTR ERV1 1 524 -7 344 167 0 13 chr3 23456029 23456107 -194581051 + CT-rich Low_complexity Low_complexity 1 77 0 2408 93 3 3 chr3 23456503 23456815 -194580343 - AluSp SINE Alu -1 312 1 1451 214 121 67 chr3 23457110 23457558 -194579600 - MLT1H LTR MaLR -6 543 72 2121 132 82 6 chr3 23457567 23457923 -194579235 - MLT1B LTR MaLR -7 383 1 699 193 132 24 chr3 23458710 23458923 -194578235 + MIR SINE MIR 25 260 -2 1708 146 39 29 chr3 23458936 23459245 -194577913 - AluJo SINE Alu 0 312 1 2610 47 0 0 chr3 23459830 23460131 -194577027 + AluY SINE Alu 1 301 -10 1486 197 3 27 chr3 23460517 23460812 -194576346 - AluJo SINE Alu -24 288 1 31 0 0 0 chr3 23460850 23460881 -194576277 + AT_rich Low_complexity Low_complexity 1 31 0 263 301 80 53 chr3 23461320 23461582 -194575576 + L3 LINE CR1 1308 1576 -1 418 248 10 10 chr3 23462382 23462483 -194574675 - LTR16B LTR ERVL 0 464 364 826 176 28 28 chr3 23462491 23462673 -194574485 + MER53 DNA DNA 2 183 -6 535 268 68 29 chr3 23462671 23462753 -194574405 - LTR16B LTR ERVL -102 362 285 * 2134 181 82 19 chr3 23462753 23463227 -194573931 + MLT1D LTR MaLR 2 505 0 535 268 68 29 chr3 23463227 23463463 -194573695 - LTR16B LTR ERVL -179 285 1 313 215 25 0 chr3 23463474 23463553 -194573605 - MIR SINE MIR -111 151 71 550 215 35 105 chr3 23463553 23463753 -194573405 - MER20 DNA MER1_type -33 186 1 380 304 54 22 chr3 23463782 23463966 -194573192 + MIR SINE MIR 41 230 -32 2234 122 0 0 chr3 23463969 23464273 -194572885 - AluSx SINE Alu -8 304 1 196 368 8 0 chr3 23465452 23465585 -194571573 - L2 LINE L2 -1026 2288 2155 1375 132 54 0 chr3 23465613 23465818 -194571340 - AluSx SINE Alu -96 216 1 25 31 0 0 chr3 23465818 23465850 -194571308 + AT_rich Low_complexity Low_complexity 1 32 0 1484 93 10 5 chr3 23466050 23466244 -194570914 + AluSx SINE Alu 3 197 -115 271 198 49 31 chr3 23466329 23466452 -194570706 + L2 LINE L2 2921 3047 -266 262 248 168 32 chr3 23466682 23466807 -194570351 - MIR SINE MIR -115 147 6 641 163 7 0 chr3 23467842 23467977 -194569181 + (TCCA)n Simple_repeat Simple_repeat 1 136 0 272 300 12 0 chr3 23467977 23468057 -194569101 + (CCCA)n Simple_repeat Simple_repeat 4 84 0 450 278 0 0 chr3 23468057 23468237 -194568921 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 452 277 92 11 chr3 23468335 23468519 -194568639 + MIR SINE MIR 12 210 -52 2217 129 3 0 chr3 23469177 23469488 -194567670 + AluSx SINE Alu 1 312 0 264 206 175 0 chr3 23469830 23469927 -194567231 + MIR SINE MIR 31 144 -118 1910 140 21 11 chr3 23470401 23470687 -194566471 - AluJb SINE Alu -23 289 1 435 239 99 67 chr3 23470689 23471003 -194566155 - L1MC5 LINE L1 -28 7933 7610 2226 106 0 20 chr3 23471140 23471442 -194565716 + AluSc SINE Alu 1 296 -13 1901 124 4 4 chr3 23472030 23472295 -194564863 + AluSx SINE Alu 1 265 -47 355 153 92 20 chr3 23472367 23472465 -194564693 - HAL1b LINE L1 -28 1320 1216 512 200 72 33 chr3 23472517 23472697 -194564461 - HAL1b LINE L1 -222 1126 940 946 276 113 11 chr3 23473199 23473649 -194563509 - HAL1b LINE L1 -415 933 438 2353 85 0 16 chr3 23473652 23473968 -194563190 - AluY SINE Alu 0 311 1 228 312 83 0 chr3 23474029 23474138 -194563020 - HAL1b LINE L1 -734 614 497 225 268 49 0 chr3 23474241 23474323 -194562835 - L2 LINE L2 -220 3052 2967 1296 189 41 144 chr3 23474338 23474797 -194562361 + MLT2B1 LTR ERVL 3 414 0 192 77 0 0 chr3 23475180 23475206 -194561952 + (TGG)n Simple_repeat Simple_repeat 2 27 0 587 89 0 0 chr3 23475374 23475453 -194561705 + MADE1 DNA Mariner 2 80 0 619 337 30 26 chr3 23476808 23477111 -194560047 + MLT1I LTR MaLR 103 406 -3 378 0 0 0 chr3 23477125 23477167 -194559991 + (TG)n Simple_repeat Simple_repeat 1 42 0 781 221 19 33 chr3 23478324 23478537 -194558621 - MER20 DNA MER1_type -9 210 1 282 196 69 143 chr3 23478595 23478695 -194558463 + L1ME3A LINE L1 5996 6077 -93 1797 153 6 31 chr3 23478695 23479015 -194558143 - AluJo SINE Alu 0 312 1 282 196 69 143 chr3 23479015 23479103 -194558055 + L1ME3A LINE L1 6077 6170 0 1966 148 10 3 chr3 23479456 23479746 -194557412 - AluSx SINE Alu -18 294 3 2165 113 10 0 chr3 23479955 23480247 -194556911 + AluSx SINE Alu 1 295 -17 1669 196 3 13 chr3 23480902 23481064 -194556094 - L1M3 LINE L1 -528 5652 5495 2262 117 0 7 chr3 23481064 23481372 -194555786 - AluSx SINE Alu -6 306 1 1669 196 3 13 chr3 23481372 23481536 -194555622 - L1M3 LINE L1 -685 5495 5331 952 264 135 38 chr3 23481536 23481957 -194555201 + L1ME1 LINE L1 5652 6113 -53 1094 197 14 27 chr3 23482029 23482252 -194554906 + AluJo SINE Alu 1 220 -92 386 111 0 0 chr3 23482252 23482306 -194554852 + AluSg/x SINE Alu 84 137 -163 1170 149 11 0 chr3 23483184 23483358 -194553800 + AluSg/x SINE Alu 130 305 -7 885 169 0 20 chr3 23483362 23483510 -194553648 + FRAM SINE Alu 2 146 -30 444 118 0 0 chr3 23483512 23483580 -194553578 + (CATA)n Simple_repeat Simple_repeat 2 69 0 190 268 173 31 chr3 23483752 23483879 -194553279 - MIR SINE MIR -25 237 93 2604 152 18 25 chr3 23483880 23484327 -194552831 - L1MA7 LINE L1 -233 6058 5615 1049 153 88 0 chr3 23484327 23484538 -194552620 + L1MA7 LINE L1 6051 6285 -6 183 233 35 81 chr3 23484556 23484642 -194552516 - MIR SINE MIR -156 106 25 183 80 0 0 chr3 23485410 23485435 -194551723 + (T)n Simple_repeat Simple_repeat 1 25 0 189 238 29 143 chr3 23485499 23485604 -194551554 - L2 LINE L2 -7 3265 3173 2842 201 27 55 chr3 23486477 23487318 -194549840 - LTR5 LTR ERVK 0 969 152 283 409 0 24 chr3 23487868 23487995 -194549163 + L2 LINE L2 3143 3266 -6 185 420 0 0 chr3 23488224 23488305 -194548853 + MIR SINE MIR 19 99 -109 496 311 30 0 chr3 23488551 23488715 -194548443 + MIR SINE MIR 88 256 -6 847 96 0 59 chr3 23488953 23489089 -194548069 + L1M3 LINE L1 5454 5581 -590 192 123 82 0 chr3 23489267 23489340 -194547818 + (TA)n Simple_repeat Simple_repeat 1 79 0 854 247 119 24 chr3 23489570 23490085 -194547073 + MLT1G1 LTR MaLR 1 515 -15 1351 131 58 0 chr3 23490375 23490635 -194546523 + MER33 DNA MER1_type 37 311 -13 1830 213 52 56 chr3 23491204 23491674 -194545484 + Charlie1b DNA MER1_type 1 470 -2291 1744 156 19 6 chr3 23491674 23491994 -194545164 + L1MA9 LINE L1 5984 6307 -5 1830 213 52 56 chr3 23491994 23492044 -194545114 + Charlie1b DNA MER1_type 470 519 -4 281 311 102 22 chr3 23494163 23494364 -194542794 + MIR SINE MIR 30 244 -18 24 0 0 0 chr3 23494592 23494616 -194542542 + AT_rich Low_complexity Low_complexity 1 24 0 268 267 27 0 chr3 23495147 23495222 -194541936 + MLT1I LTR MaLR 1 77 -332 827 248 181 26 chr3 23495287 23495557 -194541601 + MLT1I LTR MaLR 88 399 -10 369 290 34 34 chr3 23495724 23495931 -194541227 - L1ME LINE L1 -389 5732 5526 445 344 44 6 chr3 23496136 23496319 -194540839 + MER91A DNA MER1_type 2 191 -5 254 328 0 0 chr3 23496890 23496954 -194540204 + polypurine Low_complexity Low_complexity 4 67 0 267 198 55 0 chr3 23496973 23497064 -194540094 + GA-rich Low_complexity Low_complexity 1 96 0 197 280 187 28 chr3 23497841 23497948 -194539210 + L2 LINE L2 3148 3271 -1 417 221 100 57 chr3 23498472 23498612 -194538546 + MLT1I LTR MaLR 404 549 0 188 375 107 0 chr3 23498619 23498731 -194538427 + L2 LINE L2 2915 3038 -234 310 197 56 0 chr3 23499297 23499368 -194537790 + MER94 DNA DNA 48 122 -12 237 297 0 55 chr3 23499898 23499989 -194537169 + MIR3 SINE MIR 122 207 -1 1382 186 52 42 chr3 23500443 23500749 -194536409 + AluJo SINE Alu 1 309 -3 320 289 69 64 chr3 23500806 23501024 -194536134 + MIR SINE MIR 10 228 -34 302 237 10 0 chr3 23501600 23501697 -194535461 + (CTATA)n Simple_repeat Simple_repeat 1 98 0 612 91 0 0 chr3 23501699 23501787 -194535371 + (CCTAT)n Simple_repeat Simple_repeat 2 89 0 411 223 273 0 chr3 23501790 23501929 -194535229 + MER5A DNA MER1_type 9 185 -4 6968 58 9 43 chr3 23502976 23503963 -194533195 - SVA Other Other 0 1386 433 5825 77 31 15 chr3 23503976 23504927 -194532231 - SVA Other Other -520 866 1 705 241 52 94 chr3 23505169 23505212 -194531946 - HAL1 LINE L1 -100 2407 2364 2521 61 3 0 chr3 23505212 23505509 -194531649 - AluY SINE Alu -12 299 2 705 241 52 94 chr3 23505509 23505571 -194531587 - HAL1 LINE L1 -143 2364 2301 2002 149 10 19 chr3 23505571 23505880 -194531278 - AluJo SINE Alu -6 306 1 705 241 52 94 chr3 23505880 23506155 -194531003 - HAL1 LINE L1 -206 2301 2042 232 274 68 8 chr3 23506245 23506362 -194530796 - L1ME2 LINE L1 -2 6162 6039 243 189 40 14 chr3 23506581 23506655 -194530503 + (CAA)n Simple_repeat Simple_repeat 3 78 0 1981 194 109 2 chr3 23507733 23508146 -194529012 + MSTB2 LTR MaLR 1 457 0 196 327 58 0 chr3 23510869 23510973 -194526185 - MER5A DNA MER1_type -79 110 1 408 208 167 17 chr3 23511000 23511120 -194526038 - MER5B DNA MER1_type -40 138 1 589 153 0 0 chr3 23511150 23511256 -194525902 + MER5A DNA MER1_type 4 109 -80 233 240 231 10 chr3 23511181 23511285 -194525873 - MER5A DNA MER1_type -23 166 40 * 280 328 0 17 chr3 23511330 23511446 -194525712 + MER5B DNA MER1_type 63 176 -2 282 324 28 49 chr3 23511452 23511594 -194525564 + MIR SINE MIR 13 151 -111 5050 118 7 17 chr3 23511727 23512934 -194524224 + L1P4 LINE L1 4589 5792 -371 817 152 7 46 chr3 23512934 23513085 -194524073 - THE1C LTR MaLR 0 375 231 199 248 0 0 chr3 23513711 23513765 -194523393 - MIR SINE MIR -65 143 97 681 153 140 20 chr3 23514365 23514515 -194522643 - MLT1D LTR MaLR 0 505 338 679 137 26 0 chr3 23514615 23514732 -194522426 + L1 LINE L1 4689 4808 -1338 220 210 25 0 chr3 23514739 23514820 -194522338 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 858 198 54 0 chr3 23515968 23516135 -194521023 - MER97a DNA MER1_type? -716 178 3 333 0 0 0 chr3 23516265 23516302 -194520856 + (CA)n Simple_repeat Simple_repeat 2 38 0 372 158 0 0 chr3 23516302 23516378 -194520780 + GA-rich Low_complexity Low_complexity 1 76 0 197 234 187 28 chr3 23517738 23517845 -194519313 + L2 LINE L2 3189 3312 -1 417 221 100 57 chr3 23518369 23518509 -194518649 + MLT1H LTR MaLR 404 549 0 188 375 107 0 chr3 23518516 23518628 -194518530 + L2 LINE L2 2915 3038 -234 310 197 56 0 chr3 23519194 23519265 -194517893 + MER94 DNA DNA 48 122 -12 237 297 0 55 chr3 23519795 23519886 -194517272 + MIR3 SINE MIR 122 207 -1 1382 186 52 42 chr3 23520340 23520646 -194516512 + AluJo SINE Alu 1 309 -3 320 289 69 64 chr3 23520703 23520921 -194516237 + MIR SINE MIR 10 228 -34 302 237 10 0 chr3 23521497 23521594 -194515564 + (CTATA)n Simple_repeat Simple_repeat 1 98 0 612 91 0 0 chr3 23521596 23521684 -194515474 + (CCTAT)n Simple_repeat Simple_repeat 2 89 0 411 223 273 0 chr3 23521687 23521826 -194515332 + MER5A DNA MER1_type 9 185 -4 6955 57 10 43 chr3 23522873 23523859 -194513299 - SVA Other Other 0 1386 433 6117 60 19 47 chr3 23523872 23525032 -194512126 - SVA Other Other -518 868 4 223 0 0 96 chr3 23525032 23525084 -194512074 + (GGGAGA)n Simple_repeat Simple_repeat 4 50 0 820 157 0 0 chr3 23525618 23525733 -194511425 + FLAM_C SINE Alu 1 115 -28 956 292 128 8 chr3 23526488 23526855 -194510303 + LTR16C LTR ERVL 81 491 0 26 0 0 0 chr3 23527013 23527039 -194510119 + AT_rich Low_complexity Low_complexity 1 26 0 2692 80 0 3 chr3 23527078 23527427 -194509731 + L1PA8A LINE L1 5480 5827 -304 2609 76 0 12 chr3 23527527 23527871 -194509287 + L1PA8A LINE L1 5780 6119 -12 300 245 108 10 chr3 23527970 23528072 -194509086 + MIR SINE MIR 95 206 -56 329 152 174 43 chr3 23528332 23528424 -194508734 - MER53 DNA DNA -82 107 4 260 288 0 0 chr3 23528840 23528906 -194508252 + MIR SINE MIR 196 261 -1 253 320 0 13 chr3 23529493 23529571 -194507587 - MIR SINE MIR -178 84 8 1607 188 4 11 chr3 23530406 23530683 -194506475 + AluJo SINE Alu 1 275 -37 33 90 0 0 chr3 23531658 23531747 -194505411 + AT_rich Low_complexity Low_complexity 1 89 0 572 270 104 12 chr3 23533541 23533704 -194503454 + MER20B DNA MER1_type 1 178 -605 330 276 64 72 chr3 23533865 23534251 -194502907 + MLT1H LTR MaLR 57 533 -16 441 317 43 11 chr3 23535365 23535551 -194501607 - MIR SINE MIR -51 211 20 209 317 28 42 chr3 23536817 23536959 -194500199 + MIR SINE MIR 58 197 -65 468 285 15 69 chr3 23537080 23537340 -194499818 + LTR16A1 LTR ERVL 208 453 -4 207 219 140 84 chr3 23537371 23537555 -194499603 + MIR SINE MIR 42 235 -27 443 309 79 0 chr3 23537939 23538104 -194499054 - MIR SINE MIR 0 262 85 23 0 0 0 chr3 23538440 23538463 -194498695 + AT_rich Low_complexity Low_complexity 1 23 0 964 259 110 47 chr3 23539457 23539886 -194497272 + LTR16A1 LTR ERVL 2 457 0 258 184 92 103 chr3 23540240 23540327 -194496831 + L2 LINE L2 3141 3226 -46 685 224 28 0 chr3 23540470 23540613 -194496545 + MER3 DNA MER1_type 62 208 -1 268 260 0 0 chr3 23540574 23540624 -194496534 - MER3 DNA MER1_type -122 87 38 * 334 353 98 0 chr3 23540627 23540749 -194496409 - MIR3 SINE MIR -52 156 23 845 251 49 12 chr3 23542697 23542944 -194494214 + MIR SINE MIR 2 257 -5 230 103 103 0 chr3 23543002 23543041 -194494117 - L1P4 LINE L1 -426 5735 5693 21 36 0 0 chr3 23543289 23543317 -194493841 + AT_rich Low_complexity Low_complexity 1 28 0 240 258 30 0 chr3 23543619 23543685 -194493473 - L1MC4a LINE L1 -587 7221 7154 2178 216 52 5 chr3 23544444 23545023 -194492135 + L1MC4 LINE L1 7161 7766 -276 1341 108 36 21 chr3 23545023 23545217 -194491941 + AluJb SINE Alu 98 294 -18 607 230 29 11 chr3 23545221 23545395 -194491763 + L1MC4 LINE L1 7757 7933 -109 296 341 71 45 chr3 23545415 23545723 -194491435 - L2 LINE L2 -20 3252 2937 629 226 158 12 chr3 23546084 23546248 -194490910 - MER5A DNA MER1_type 0 189 2 1579 182 4 11 chr3 23546253 23546528 -194490630 + AluJo SINE Alu 1 273 -39 443 128 0 13 chr3 23546557 23546635 -194490523 + (GAAAA)n Simple_repeat Simple_repeat 3 79 0 22 0 0 0 chr3 23547102 23547124 -194490034 + AT_rich Low_complexity Low_complexity 1 22 0 604 224 6 6 chr3 23547473 23547652 -194489506 + L1 LINE L1 3246 3424 -2722 40637 32 27 3 chr3 23547653 23553690 -194483468 + L1PA3 LINE L1 1 6155 0 15928 93 10 8 chr3 23553822 23556766 -194480392 + L1PA7 LINE L1 3221 6154 0 380 164 0 0 chr3 23556803 23556864 -194480294 + L1PA16 LINE L1 6098 6158 -8 928 261 9 4 chr3 23557440 23557670 -194479488 - MLT1G1 LTR MaLR -364 231 1 414 270 98 58 chr3 23557670 23557844 -194479314 - MLT1G1-int LTR MaLR 0 1371 1191 250 211 53 0 chr3 23558093 23558150 -194479008 + MER46C DNA MER2_type 279 338 0 631 257 34 22 chr3 23558411 23558590 -194478568 - MIR SINE MIR -14 248 68 1846 193 38 34 chr3 23558594 23558672 -194478486 - Looper DNA T2_type -941 617 541 20802 94 21 1 chr3 23558672 23561324 -194475834 - Charlie3 DNA MER1_type -4 2706 1 1846 193 38 34 chr3 23561324 23561340 -194475818 - Looper DNA T2_type -1017 541 527 912 200 11 21 chr3 23561340 23561530 -194475628 + L1MD2 LINE L1 6172 6359 0 1846 193 38 34 chr3 23561530 23561912 -194475246 - Looper DNA T2_type -1031 527 138 205 188 24 0 chr3 23561912 23561997 -194475161 + (TA)n Simple_repeat Simple_repeat 1 87 0 735 164 26 13 chr3 23561997 23562149 -194475009 - Looper DNA T2_type -1402 156 3 348 235 155 46 chr3 23562160 23562368 -194474790 + L2 LINE L2 2772 2997 -275 192 310 99 14 chr3 23562463 23562534 -194474624 + L2 LINE L2 3134 3210 -62 2121 99 14 7 chr3 23562689 23562983 -194474175 + AluSq SINE Alu 1 296 -17 348 217 165 26 chr3 23563009 23563124 -194474034 + Charlie8 DNA MER1_type 91 221 -2196 2112 98 0 4 chr3 23563259 23563535 -194473623 - AluSq SINE Alu -15 298 24 1729 99 0 5 chr3 23563535 23563756 -194473402 - AluSq SINE Alu -92 221 1 672 232 68 11 chr3 23564220 23564397 -194472761 + MER5A DNA MER1_type 1 187 -2 245 348 33 52 chr3 23564496 23564706 -194472452 + L2 LINE L2 2958 3163 -109 30 45 0 0 chr3 23564852 23564896 -194472262 + AT_rich Low_complexity Low_complexity 1 44 0 1215 194 26 8 chr3 23565343 23565611 -194471547 + L1M4 LINE L1 4290 4562 -1584 205 305 85 24 chr3 23565654 23565736 -194471422 + L2 LINE L2 3185 3271 -1 295 282 29 58 chr3 23566012 23566115 -194471043 - L2 LINE L2 -1 3271 3172 704 220 196 4 chr3 23566302 23566547 -194470611 - L1ME2 LINE L1 -6 6158 5867 24 67 0 0 chr3 23567089 23567134 -194470024 + GC_rich Low_complexity Low_complexity 1 45 0 6595 146 83 8 chr3 23568018 23569162 -194467996 - Tigger3b DNA MER2_type 0 1231 2 446 290 9 63 chr3 23569238 23569277 -194467881 - L1ME2 LINE L1 -306 5815 5775 1640 157 7 49 chr3 23569277 23569583 -194467575 - AluJo SINE Alu -19 293 1 446 290 9 63 chr3 23569583 23569764 -194467394 - L1ME2 LINE L1 -346 5775 5607 2360 94 3 0 chr3 23569998 23570297 -194466861 - AluSp SINE Alu -13 300 1 680 154 48 148 chr3 23570303 23570597 -194466561 - L1MA4 LINE L1 0 6300 6041 1541 167 12 4 chr3 23570990 23571248 -194465910 - AluJo SINE Alu -14 298 39 1014 73 6 8 chr3 23571584 23571761 -194465397 - AluJb SINE Alu -13 299 86 540 79 0 40 chr3 23572453 23572529 -194464629 + tRNA-Lys-AAA tRNA tRNA 1 73 -3 2045 144 17 0 chr3 23572600 23572899 -194464259 + AluSx SINE Alu 1 304 -8 22 35 0 0 chr3 23572953 23572982 -194464176 + AT_rich Low_complexity Low_complexity 1 29 0 304 297 162 9 chr3 23573386 23573497 -194463661 - MIR3 SINE MIR -32 176 49 2421 77 0 3 chr3 23574867 23575167 -194461991 - AluY SINE Alu -12 299 1 1762 171 24 0 chr3 23575429 23575722 -194461436 + AluJb SINE Alu 1 300 -12 183 266 101 101 chr3 23575731 23575817 -194461341 + MIR SINE MIR 14 102 -160 1048 157 103 29 chr3 23575817 23576021 -194461137 + MER20 DNA MER1_type 1 219 0 183 266 101 101 chr3 23576021 23576092 -194461066 + MIR SINE MIR 101 171 -91 759 180 0 58 chr3 23576132 23576271 -194460887 + FLAM_A SINE Alu 2 132 -1 4860 162 32 18 chr3 23576306 23576798 -194460360 - L1MB7 LINE L1 0 6184 5671 2121 125 0 7 chr3 23576798 23577087 -194460071 + AluSx SINE Alu 8 294 -18 4860 162 32 18 chr3 23577087 23577534 -194459624 - L1MB7 LINE L1 -513 5671 5232 1919 143 0 33 chr3 23577943 23578250 -194458908 + AluJb SINE Alu 1 297 -15 22 0 0 0 chr3 23578670 23578692 -194458466 + AT_rich Low_complexity Low_complexity 1 22 0 885 221 77 71 chr3 23579896 23580235 -194456923 + L2 LINE L2 2973 3313 0 220 384 12 43 chr3 23580405 23580569 -194456589 + L2 LINE L2 563 721 -2593 244 241 0 17 chr3 23580602 23580660 -194456498 - Charlie4 DNA MER1_type -23 1938 1882 416 332 72 69 chr3 23580767 23580906 -194456252 + L2 LINE L2 2765 2902 -370 2335 96 6 10 chr3 23580906 23581218 -194455940 + AluSq SINE Alu 1 311 -2 416 332 72 69 chr3 23581218 23581569 -194455589 + L2 LINE L2 2902 3256 -16 2026 118 0 44 chr3 23582147 23582480 -194454678 - AluSx SINE Alu 0 320 1 2080 130 0 7 chr3 23582685 23582986 -194454172 + AluJb SINE Alu 11 309 -3 341 301 59 50 chr3 23583313 23583532 -194453626 - MIR SINE MIR -30 232 12 1165 119 64 50 chr3 23583757 23583975 -194453183 - AluJo SINE Alu -5 307 87 2190 119 0 19 chr3 23584141 23584460 -194452698 - AluSq SINE Alu 0 313 1 1531 146 113 22 chr3 23585164 23585438 -194451720 - AluJo SINE Alu -13 299 1 1758 160 29 39 chr3 23585446 23585753 -194451405 - AluJb SINE Alu -8 304 1 468 218 39 59 chr3 23586133 23586319 -194450839 + MIR SINE MIR 17 203 -59 201 39 0 0 chr3 23586762 23586788 -194450370 + (TG)n Simple_repeat Simple_repeat 2 27 0 1727 124 3 39 chr3 23586789 23587072 -194450086 - AluJb SINE Alu -39 273 1 381 246 188 22 chr3 23587462 23587600 -194449558 + MIR SINE MIR 81 241 -21 1435 179 47 11 chr3 23588626 23588905 -194448253 - AluJo SINE Alu -19 293 5 2260 92 0 0 chr3 23588981 23589300 -194447858 + AluSq SINE Alu 1 319 0 384 236 24 49 chr3 23589948 23590071 -194447087 + L2 LINE L2 3193 3312 -1 243 61 0 0 chr3 23590198 23590231 -194446927 + (A)n Simple_repeat Simple_repeat 1 33 0 215 153 119 51 chr3 23591638 23591697 -194445461 + MIR SINE MIR 135 197 -65 441 273 55 8 chr3 23591884 23592012 -194445146 + MIR SINE MIR 20 153 -55 2230 123 0 3 chr3 23592369 23592679 -194444479 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr3 23592849 23592870 -194444288 + AT_rich Low_complexity Low_complexity 1 21 0 554 138 92 31 chr3 23592930 23592996 -194444162 - L1MB8 LINE L1 -6 6172 6111 2407 58 41 0 chr3 23592996 23593290 -194443868 - AluY SINE Alu -5 306 1 554 138 92 31 chr3 23593290 23593353 -194443805 - L1MB8 LINE L1 -67 6111 6035 225 346 13 10 chr3 23593470 23593627 -194443531 + MIR SINE MIR 26 243 -19 368 261 36 51 chr3 23593641 23593779 -194443379 + L2 LINE L2 3178 3313 0 319 186 5 59 chr3 23594239 23594334 -194442824 + L1ME2 LINE L1 6015 6108 -54 1830 138 50 10 chr3 23594334 23594631 -194442527 + AluJb SINE Alu 1 309 -3 341 301 59 50 chr3 23594957 23595176 -194441982 - MIR SINE MIR -30 232 12 1165 119 64 50 chr3 23595401 23595619 -194441539 - AluJo SINE Alu -5 307 87 2190 119 0 19 chr3 23595785 23596104 -194441054 - AluSq SINE Alu 0 313 1 1531 146 113 22 chr3 23596808 23597082 -194440076 - AluJo SINE Alu -13 299 1 1758 160 29 39 chr3 23597090 23597397 -194439761 - AluJb SINE Alu -8 304 1 468 218 39 59 chr3 23597777 23597963 -194439195 + MIR SINE MIR 17 203 -59 201 39 0 0 chr3 23598406 23598432 -194438726 + (TG)n Simple_repeat Simple_repeat 2 27 0 1727 124 3 39 chr3 23598433 23598716 -194438442 - AluJb SINE Alu -39 273 1 382 246 188 22 chr3 23599106 23599244 -194437914 + MIR SINE MIR 81 241 -21 188 302 139 12 chr3 23600059 23600145 -194437013 - L2 LINE L2 -5 3267 3171 1441 179 47 11 chr3 23600270 23600549 -194436609 - AluJo SINE Alu -19 293 5 2248 92 0 0 chr3 23600625 23600944 -194436214 + AluSq SINE Alu 1 319 0 380 279 8 33 chr3 23601593 23601715 -194435443 + L2 LINE L2 3153 3271 -1 1541 167 12 4 chr3 23602117 23602375 -194434783 - AluJo SINE Alu -14 298 39 1009 73 6 8 chr3 23602711 23602888 -194434270 - AluJb SINE Alu -13 299 86 500 79 0 40 chr3 23603580 23603656 -194433502 + tRNA-Lys-AAA tRNA tRNA 1 73 -3 2030 144 17 0 chr3 23603727 23604026 -194433132 + AluSx SINE Alu 1 304 -8 22 35 0 0 chr3 23604080 23604109 -194433049 + AT_rich Low_complexity Low_complexity 1 29 0 316 308 144 11 chr3 23604513 23604644 -194432514 - MIR3 SINE MIR -32 176 30 2400 77 0 3 chr3 23605994 23606294 -194430864 - AluY SINE Alu -12 299 1 1751 171 24 0 chr3 23606556 23606849 -194430309 + AluJb SINE Alu 1 300 -12 198 266 101 101 chr3 23606858 23606944 -194430214 + MIR SINE MIR 14 102 -160 954 157 103 29 chr3 23606944 23607148 -194430010 + MER20 DNA MER1_type 1 219 0 198 266 101 101 chr3 23607148 23607219 -194429939 + MIR SINE MIR 101 171 -91 699 180 0 58 chr3 23607259 23607398 -194429760 + FLAM_A SINE Alu 2 132 -1 4692 161 33 19 chr3 23607433 23607925 -194429233 - L1MB7 LINE L1 0 6184 5671 2112 125 0 7 chr3 23607925 23608214 -194428944 + AluSx SINE Alu 8 294 -18 4692 161 33 19 chr3 23608214 23608661 -194428497 - L1MB7 LINE L1 -513 5671 5232 1910 143 0 33 chr3 23609070 23609377 -194427781 + AluJb SINE Alu 1 297 -15 22 0 0 0 chr3 23609797 23609819 -194427339 + AT_rich Low_complexity Low_complexity 1 22 0 900 221 77 71 chr3 23611023 23611362 -194425796 + L2 LINE L2 2973 3313 0 228 384 12 43 chr3 23611532 23611696 -194425462 + L2 LINE L2 563 721 -2593 245 241 0 17 chr3 23611729 23611787 -194425371 - Charlie4 DNA MER1_type -23 1938 1882 433 334 70 67 chr3 23611894 23612033 -194425125 + L2 LINE L2 2765 2902 -370 2309 96 6 10 chr3 23612033 23612345 -194424813 + AluSq SINE Alu 1 311 -2 433 334 70 67 chr3 23612345 23612696 -194424462 + L2 LINE L2 2902 3256 -16 2027 118 0 44 chr3 23613274 23613607 -194423551 - AluSx SINE Alu 0 320 1 1646 146 60 0 chr3 23613812 23614079 -194423079 + AluSx SINE Alu 11 293 -19 311 200 0 13 chr3 23614079 23614154 -194423004 + (TATATG)n Simple_repeat Simple_repeat 5 78 0 439 214 86 0 chr3 23614161 23614278 -194422880 + MER58C DNA MER1_type 87 213 -2 378 130 0 0 chr3 23614343 23614397 -194422761 + MER66B LTR ERV1 295 348 -138 319 282 36 55 chr3 23615852 23615962 -194421196 + L2 LINE L2 3206 3313 0 496 251 156 16 chr3 23616056 23616299 -194420859 + L1ME4a LINE L1 5531 5807 -314 1911 179 0 3 chr3 23616380 23616687 -194420471 - AluJb SINE Alu -6 306 1 418 214 83 36 chr3 23616702 23616870 -194420288 + L1ME4a LINE L1 5946 6121 0 689 208 193 24 chr3 23617065 23617277 -194419881 + MIR SINE MIR 5 252 -10 323 261 34 17 chr3 23617322 23617441 -194419717 + L1ME4a LINE L1 5573 5693 -428 350 195 37 0 chr3 23617593 23617675 -194419483 + L1ME4a LINE L1 5786 5870 -251 592 254 11 58 chr3 23617719 23617908 -194419250 + L2 LINE L2 3125 3304 -9 27 54 0 40 chr3 23618138 23618187 -194418971 + AT_rich Low_complexity Low_complexity 1 48 -23 2266 100 7 0 chr3 23618187 23618488 -194418670 - AluSx SINE Alu -9 303 1 27 54 0 40 chr3 23618488 23618512 -194418646 + AT_rich Low_complexity Low_complexity 48 71 0 524 176 0 145 chr3 23619083 23619242 -194417916 + FLAM_C SINE Alu 1 136 -7 618 273 132 9 chr3 23619320 23619540 -194417618 + MIR SINE MIR 3 249 -13 27 49 0 0 chr3 23619687 23619728 -194417430 + AT_rich Low_complexity Low_complexity 1 41 0 31 0 0 0 chr3 23619916 23619947 -194417211 + AT_rich Low_complexity Low_complexity 1 31 0 2977 83 38 11 chr3 23620536 23620984 -194416174 + L1PA14 LINE L1 5700 6159 -2 711 186 111 42 chr3 23621436 23621674 -194415484 + MER33 DNA MER1_type 1 242 -82 1244 63 0 13 chr3 23621676 23621835 -194415323 - AluSp/q SINE Alu -1 312 156 475 173 25 0 chr3 23623171 23623252 -194413906 + MER5A DNA MER1_type 30 112 -77 856 194 31 47 chr3 23623304 23623495 -194413663 - MER5A DNA MER1_type 0 189 2 2321 85 0 0 chr3 23623651 23623944 -194413214 - AluSg SINE Alu -17 293 1 1264 173 35 0 chr3 23624144 23624370 -194412788 - MER46A DNA MER2_type -1 235 2 248 290 93 19 chr3 23625208 23625315 -194411843 + MIR SINE MIR 37 151 -111 2140 91 3 7 chr3 23626150 23626460 -194410698 + AluSp SINE Alu 1 309 0 1170 141 0 129 chr3 23626463 23626540 -194410618 - AluJo SINE Alu -102 210 125 2024 119 3 10 chr3 23626540 23626842 -194410316 - AluSx SINE Alu -12 300 1 1170 141 0 129 chr3 23626842 23627005 -194410153 - AluJo SINE Alu -187 125 1 333 152 36 31 chr3 23627061 23627144 -194410014 + LTR24B LTR ERV1 332 544 -32 516 238 71 0 chr3 23627190 23627316 -194409842 + FLAM_A SINE Alu 1 135 -7 418 172 0 9 chr3 23627351 23627441 -194409717 - L1ME LINE L1 -394 5772 5689 1166 224 111 43 chr3 23627441 23627839 -194409319 + L2 LINE L2 2884 3308 -5 247 244 91 102 chr3 23628144 23628341 -194408817 + MER91A DNA MER1_type 2 196 0 957 213 48 13 chr3 23628660 23628890 -194408268 - MIR SINE MIR -5 257 20 279 213 27 13 chr3 23628896 23628971 -194408187 + CT-rich Low_complexity Low_complexity 4 79 0 234 164 0 0 chr3 23629346 23629401 -194407757 + GA-rich Low_complexity Low_complexity 2 56 0 287 298 129 29 chr3 23629537 23629708 -194407450 + L2 LINE L2 2896 3083 -189 869 168 84 51 chr3 23629884 23630098 -194407060 + MIR SINE MIR 42 262 0 906 71 8 24 chr3 23630209 23630335 -194406823 + AluY SINE Alu 1 124 -187 403 176 110 0 chr3 23630846 23630937 -194406221 + MER58C DNA MER1_type 113 213 -2 378 130 0 0 chr3 23631002 23631056 -194406102 + MER66A LTR ERV1 287 340 -138 316 291 48 19 chr3 23632510 23632613 -194404545 + L2 LINE L2 3206 3311 -2 496 251 156 16 chr3 23632712 23632955 -194404203 + L1ME4a LINE L1 5531 5807 -314 1864 186 0 3 chr3 23633036 23633343 -194403815 - AluJb SINE Alu -6 306 1 418 214 83 36 chr3 23633358 23633526 -194403632 + L1ME4a LINE L1 5946 6121 0 689 208 193 24 chr3 23633721 23633933 -194403225 + MIR SINE MIR 5 252 -10 323 261 34 17 chr3 23633978 23634097 -194403061 + L1ME4a LINE L1 5573 5693 -428 350 195 37 0 chr3 23634249 23634331 -194402827 + L1ME4a LINE L1 5786 5870 -251 592 254 11 58 chr3 23634375 23634564 -194402594 + L2 LINE L2 3125 3304 -9 27 54 0 40 chr3 23634794 23634843 -194402315 + AT_rich Low_complexity Low_complexity 1 48 -23 2266 100 7 0 chr3 23634843 23635144 -194402014 - AluSx SINE Alu -9 303 1 27 54 0 40 chr3 23635144 23635168 -194401990 + AT_rich Low_complexity Low_complexity 48 71 0 524 176 0 145 chr3 23635739 23635898 -194401260 + FLAM_C SINE Alu 1 136 -7 575 273 136 14 chr3 23635976 23636196 -194400962 + MIR SINE MIR 3 249 -13 27 49 0 0 chr3 23636342 23636383 -194400775 + AT_rich Low_complexity Low_complexity 1 41 0 31 0 0 0 chr3 23636571 23636602 -194400556 + AT_rich Low_complexity Low_complexity 1 31 0 2938 83 40 11 chr3 23637191 23637638 -194399520 + L1PA14 LINE L1 5700 6159 -2 711 186 111 42 chr3 23638090 23638328 -194398830 + MER33 DNA MER1_type 1 242 -82 1250 62 0 12 chr3 23638329 23638489 -194398669 - AluSp/q SINE Alu 0 313 156 475 173 25 0 chr3 23639823 23639904 -194397254 + MER5A DNA MER1_type 30 112 -77 856 194 31 47 chr3 23639956 23640147 -194397011 - MER5A DNA MER1_type 0 189 2 2321 85 0 0 chr3 23640303 23640596 -194396562 - AluSg SINE Alu -17 293 1 1264 173 35 0 chr3 23640797 23641023 -194396135 - MER46A DNA MER2_type -1 235 2 222 280 103 28 chr3 23641860 23641967 -194395191 + MIR SINE MIR 37 151 -111 2237 98 3 13 chr3 23642802 23643118 -194394040 + AluSp SINE Alu 1 313 0 2399 117 0 18 chr3 23644256 23644599 -194392559 - MER1B DNA MER1_type 0 337 1 1564 186 13 52 chr3 23644641 23644948 -194392210 + AluJo SINE Alu 1 295 -17 3171 121 75 126 chr3 23645310 23646094 -194391064 - Tigger3(Golem) DNA MER2_type -1 3028 2285 542 229 0 9 chr3 23646095 23646204 -194390954 - Tigger3(Golem) DNA MER2_type -2921 108 1 1765 139 28 24 chr3 23646456 23646743 -194390415 + AluJo SINE Alu 1 288 -24 23 0 0 0 chr3 23646815 23646838 -194390320 + AT_rich Low_complexity Low_complexity 1 23 0 2388 81 7 3 chr3 23646874 23647183 -194389975 - AluY SINE Alu -1 310 1 216 0 0 0 chr3 23647619 23647643 -194389515 + (T)n Simple_repeat Simple_repeat 1 24 0 369 296 188 29 chr3 23648437 23648624 -194388534 - MIR SINE MIR -48 214 3 830 156 6 60 chr3 23648855 23649022 -194388136 + MER3 DNA MER1_type 1 158 -51 2023 145 0 0 chr3 23649692 23649988 -194387170 + AluJb SINE Alu 2 297 -15 631 291 199 12 chr3 23651629 23652077 -194385081 - L2 LINE L2 -3 3310 2783 851 271 116 46 chr3 23652127 23652490 -194384668 - L2 LINE L2 -998 2316 1899 1695 74 4 13 chr3 23652490 23652721 -194384437 + L1PA14 LINE L1 5927 6155 -6 851 271 116 46 chr3 23652721 23652917 -194384241 - L2 LINE L2 -1415 1899 1718 272 277 50 43 chr3 23653133 23653274 -194383884 - MIR SINE MIR -43 219 78 300 249 66 76 chr3 23653501 23653698 -194383460 + L1ME4a LINE L1 5704 5898 -223 27 49 0 0 chr3 23653920 23653961 -194383197 + AT_rich Low_complexity Low_complexity 1 41 0 2046 127 13 13 chr3 23654709 23655008 -194382150 - AluSx SINE Alu -13 299 1 298 352 62 25 chr3 23655201 23655363 -194381795 - MIR3 SINE MIR -13 195 28 673 285 107 0 chr3 23656299 23656562 -194380596 + L1ME3A LINE L1 4824 5114 -1032 2702 40 3 9 chr3 23656613 23656982 -194380176 + L1PA2 LINE L1 5813 6179 0 465 235 147 113 chr3 23657023 23657465 -194379693 + L1ME3A LINE L1 5714 6170 0 1759 151 13 38 chr3 23657482 23657800 -194379358 + AluJb SINE Alu 3 312 0 21 57 0 0 chr3 23658313 23658348 -194378810 + AT_rich Low_complexity Low_complexity 1 35 0 2079 116 13 39 chr3 23658533 23658844 -194378314 - AluSx SINE Alu -9 303 1 584 188 37 126 chr3 23658847 23659024 -194378134 - MLT1B LTR MaLR -216 158 4 343 291 101 32 chr3 23659108 23659266 -194377892 - MIR3 SINE MIR -9 199 31 243 184 40 53 chr3 23659469 23659545 -194377613 - LTR33A LTR ERVL -152 371 297 318 269 28 46 chr3 23659792 23659900 -194377258 - LTR33A LTR ERVL -361 162 57 850 157 0 8 chr3 23659936 23660070 -194377088 + FLAM_C SINE Alu 1 133 0 1636 207 50 16 chr3 23660407 23660784 -194376374 - MLT1B LTR MaLR 0 390 1 2092 120 13 17 chr3 23660827 23661128 -194376030 - AluSx SINE Alu -12 300 1 206 323 0 0 chr3 23662586 23662651 -194374507 + (CTG)n Simple_repeat Simple_repeat 1 65 0 331 219 133 0 chr3 23664323 23664428 -194372730 + MIR3 SINE MIR 45 163 -45 311 291 108 25 chr3 23664710 23664868 -194372290 - MIR SINE MIR 0 262 92 427 209 55 9 chr3 23664917 23665027 -194372131 + MER103 DNA DNA 50 164 -2 860 201 86 0 chr3 23665758 23665932 -194371226 - MER5A DNA MER1_type 0 189 1 200 184 0 0 chr3 23668691 23668729 -194368429 + (CAGCC)n Simple_repeat Simple_repeat 1 38 0 2113 95 14 3 chr3 23668773 23669058 -194368100 + AluSc SINE Alu 3 290 -19 2065 140 0 0 chr3 23669067 23669353 -194367805 + AluSx SINE Alu 1 286 -26 198 128 0 0 chr3 23669353 23669392 -194367766 + (TA)n Simple_repeat Simple_repeat 2 40 0 982 242 91 22 chr3 23670577 23670940 -194366218 + LTR37A LTR ERV1 39 426 0 1589 150 35 35 chr3 23671622 23671909 -194365249 + AluSx SINE Alu 1 287 -25 23 0 0 0 chr3 23671981 23672004 -194365154 + AT_rich Low_complexity Low_complexity 1 23 0 2386 81 10 3 chr3 23672040 23672348 -194364810 - AluY SINE Alu -1 310 1 216 0 0 0 chr3 23672784 23672808 -194364350 + (T)n Simple_repeat Simple_repeat 1 24 0 347 293 180 12 chr3 23673602 23673769 -194363389 - MIR SINE MIR -48 214 20 847 156 6 60 chr3 23674021 23674188 -194362970 + MER3 DNA MER1_type 1 158 -51 362 96 0 0 chr3 23675227 23675279 -194361879 + MADE1 DNA Mariner 29 80 0 601 205 93 25 chr3 23675401 23675545 -194361613 + MER3 DNA MER1_type 1 112 -50 1953 156 0 0 chr3 23675545 23675833 -194361325 + AluJb SINE Alu 1 288 -24 601 205 93 25 chr3 23675833 23675849 -194361309 + MER3 DNA MER1_type 112 125 -37 621 87 0 39 chr3 23675856 23675959 -194361199 - AluSc SINE Alu -13 296 198 332 143 0 0 chr3 23675972 23676021 -194361137 + MER3 DNA MER1_type 161 209 0 541 252 16 0 chr3 23676833 23676956 -194360202 + MER94 DNA DNA 10 134 0 1403 204 77 34 chr3 23677580 23677933 -194359225 - L1MC4 LINE L1 -159 7883 7516 2483 80 3 0 chr3 23677944 23678246 -194358912 - AluSg SINE Alu -7 303 1 343 222 61 40 chr3 23678343 23678442 -194358716 + U13 snRNA snRNA 1 101 -3 266 301 113 8 chr3 23679629 23679762 -194357396 + MIR SINE MIR 61 207 -55 2321 107 0 0 chr3 23679981 23680281 -194356877 + AluSg SINE Alu 1 300 -10 744 179 0 57 chr3 23680288 23680428 -194356730 + FLAM_C SINE Alu 1 132 -1 2463 76 0 0 chr3 23680432 23680736 -194356422 + AluY SINE Alu 2 305 -6 884 251 116 19 chr3 23680758 23681077 -194356081 + MLT1G1 LTR MaLR 246 595 0 273 291 68 17 chr3 23681077 23681194 -194355964 + L2 LINE L2 2883 3005 -308 980 255 97 118 chr3 23681263 23681781 -194355377 + MLT1K LTR MaLR 57 563 -25 406 147 15 0 chr3 23681830 23681898 -194355260 - MER116 DNA Mariner 0 80 12 206 378 0 52 chr3 23681902 23682003 -194355155 - L3 LINE CR1 -113 1464 1359 1463 196 60 4 chr3 23682003 23682268 -194354890 + AluJo SINE Alu 3 282 -30 447 52 0 0 chr3 23682275 23682333 -194354825 + (CA)n Simple_repeat Simple_repeat 2 59 0 206 378 0 52 chr3 23682333 23682358 -194354800 - L3 LINE CR1 -224 1353 1337 185 226 98 49 chr3 23682532 23682634 -194354524 - L3 LINE CR1 -686 891 785 492 92 0 0 chr3 23682643 23682708 -194354450 - AluJ/FRAM SINE Alu -15 297 233 395 316 96 36 chr3 23682859 23683109 -194354049 - L3 LINE CR1 -877 700 436 859 297 115 12 chr3 23683178 23683579 -194353579 - MLT1J2 LTR MaLR -8 442 1 531 101 13 0 chr3 23686622 23686701 -194350457 - AluSc SINE Alu -228 81 2 1548 169 20 24 chr3 23686730 23687025 -194350133 + AluJo SINE Alu 1 294 -18 2107 131 0 10 chr3 23687027 23687325 -194349833 + AluSx SINE Alu 1 295 -17 252 241 145 28 chr3 23689476 23689621 -194347537 - MIR SINE MIR -17 245 84 1063 106 0 0 chr3 23690704 23690845 -194346313 - AluJb SINE Alu -171 141 1 467 217 68 62 chr3 23691075 23691236 -194345922 + MER5B DNA MER1_type 4 165 -13 206 323 0 0 chr3 23692832 23692897 -194344261 + (CTG)n Simple_repeat Simple_repeat 1 65 0 331 219 133 0 chr3 23694568 23694673 -194342485 + MIR3 SINE MIR 45 163 -45 311 291 108 25 chr3 23694955 23695113 -194342045 - MIR SINE MIR 0 262 92 427 209 55 9 chr3 23695162 23695272 -194341886 + MER103 DNA DNA 50 164 -2 860 201 86 0 chr3 23696004 23696178 -194340980 - MER5A DNA MER1_type 0 189 1 200 184 0 0 chr3 23698937 23698975 -194338183 + (CAGCC)n Simple_repeat Simple_repeat 1 38 0 2113 95 14 3 chr3 23699019 23699304 -194337854 + AluSc SINE Alu 3 290 -19 2065 140 0 0 chr3 23699313 23699599 -194337559 + AluSx SINE Alu 1 286 -26 198 128 0 0 chr3 23699599 23699638 -194337520 + (TA)n Simple_repeat Simple_repeat 2 40 0 988 243 91 19 chr3 23700823 23701185 -194335973 + LTR37A LTR ERV1 39 426 0 2128 103 0 7 chr3 23701869 23702150 -194335008 + AluSx SINE Alu 1 279 -33 486 0 0 0 chr3 23702150 23702204 -194334954 + (CA)n Simple_repeat Simple_repeat 1 54 0 423 287 69 0 chr3 23704293 23704394 -194332764 - MER91C DNA MER1_type 0 140 33 1777 172 55 44 chr3 23705358 23705719 -194331439 + MLT1A1 LTR MaLR 1 365 0 427 309 42 16 chr3 23706899 23707090 -194330068 - MIR3 SINE MIR -11 197 2 536 185 92 36 chr3 23707254 23707294 -194329864 + MER33 DNA MER1_type 29 65 -2520 2271 105 20 0 chr3 23707294 23707588 -194329570 + AluSx SINE Alu 1 300 -12 536 185 92 36 chr3 23707588 23707742 -194329416 + MER33 DNA MER1_type 65 234 -90 1268 225 57 7 chr3 23707742 23708022 -194329136 + AluJo SINE Alu 1 294 -18 2348 105 0 3 chr3 23708043 23708338 -194328820 + AluSg SINE Alu 1 294 -16 243 297 0 11 chr3 23708349 23708440 -194328718 + MER33 DNA MER1_type 269 358 -5 348 179 15 0 chr3 23708641 23708708 -194328450 + MER66B LTR ERV1 419 486 0 351 216 0 181 chr3 23708716 23708887 -194328271 - L1MEd LINE L1 -5092 1027 888 2419 97 0 0 chr3 23708900 23709200 -194327958 + AluSg SINE Alu 6 305 -5 186 43 0 0 chr3 23709337 23709360 -194327798 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 242 284 38 72 chr3 23709381 23709511 -194327647 - L1MEd LINE L1 -5306 813 693 2072 128 27 3 chr3 23709511 23709807 -194327351 - AluSx SINE Alu -9 303 1 242 284 38 72 chr3 23709807 23709912 -194327246 - L1MEd LINE L1 -5426 693 586 244 333 28 0 chr3 23710288 23710360 -194326798 + MIR3 SINE MIR 82 155 -53 473 289 160 0 chr3 23710365 23710521 -194326637 - MER5A DNA MER1_type 0 189 9 190 359 26 0 chr3 23710598 23710676 -194326482 + L2 LINE L2 2973 3052 -220 296 292 14 0 chr3 23710776 23710848 -194326310 + L2 LINE L2 3241 3313 0 2616 43 0 0 chr3 23711383 23711683 -194325475 - AluY SINE Alu -11 300 1 1998 129 0 18 chr3 23712473 23712759 -194324399 + AluSx SINE Alu 1 281 -31 468 0 0 0 chr3 23712759 23712811 -194324347 + (CA)n Simple_repeat Simple_repeat 1 52 0 423 287 69 0 chr3 23714899 23715000 -194322158 - MER91C DNA MER1_type 0 140 33 1777 172 55 44 chr3 23715963 23716324 -194320834 + MLT1A1 LTR MaLR 1 365 0 427 309 42 16 chr3 23717503 23717694 -194319464 - MIR3 SINE MIR -11 197 2 536 185 92 36 chr3 23717858 23717898 -194319260 + MER33 DNA MER1_type 29 65 -2520 2271 105 20 0 chr3 23717898 23718192 -194318966 + AluSx SINE Alu 1 300 -12 536 185 92 36 chr3 23718192 23718346 -194318812 + MER33 DNA MER1_type 65 234 -90 1070 249 65 0 chr3 23718346 23718607 -194318551 + AluJo SINE Alu 1 278 -34 226 220 47 33 chr3 23718798 23718948 -194318210 - L1M4 LINE L1 -1703 4443 4292 30 45 0 0 chr3 23719397 23719441 -194317717 + AT_rich Low_complexity Low_complexity 1 44 0 267 352 29 48 chr3 23719586 23719796 -194317362 - L2 LINE L2 -109 3163 2958 652 242 62 11 chr3 23719895 23720073 -194317085 - MER5A DNA MER1_type -2 187 1 1684 113 0 5 chr3 23720536 23720758 -194316400 + AluSp SINE Alu 1 221 -92 2120 102 0 4 chr3 23720758 23721032 -194316126 + AluSx SINE Alu 24 297 -15 384 163 174 81 chr3 23721708 23721880 -194315278 - MER53 DNA DNA 0 189 2 2452 89 3 0 chr3 23722885 23723188 -194313970 + AluSp SINE Alu 1 304 -9 192 171 29 0 chr3 23723955 23723990 -194313168 - L2 LINE L2 -14 3299 3264 225 257 68 152 chr3 23723993 23724114 -194313044 + MIR SINE MIR 33 126 -136 2487 99 0 0 chr3 23724114 23724426 -194312732 + AluSx SINE Alu 1 312 0 225 257 68 152 chr3 23724426 23724541 -194312617 + MIR SINE MIR 126 249 -13 297 0 0 0 chr3 23724609 23724642 -194312516 + (TG)n Simple_repeat Simple_repeat 1 33 0 215 250 21 0 chr3 23724672 23724720 -194312438 + MIR SINE MIR 196 244 -18 225 133 44 0 chr3 23724727 23724772 -194312386 + CT-rich Low_complexity Low_complexity 1 47 0 2368 211 2 2 chr3 23725514 23725965 -194311193 - MER82 DNA MER2_type 0 653 203 1095 197 5 0 chr3 23726289 23726482 -194310676 - MER82 DNA MER2_type -459 194 1 255 61 0 0 chr3 23726655 23726688 -194310470 + (CA)n Simple_repeat Simple_repeat 1 33 0 380 296 43 9 chr3 23726769 23726884 -194310274 + L2 LINE L2 3194 3312 -1 1617 185 39 45 chr3 23727006 23727314 -194309844 - AluJb SINE Alu -6 306 1 667 257 170 44 chr3 23727871 23728276 -194308882 + MLT1H LTR MaLR 94 549 0 1893 141 31 10 chr3 23728280 23728570 -194308588 - AluJo SINE Alu -1 311 16 391 184 54 12 chr3 23728575 23728677 -194308481 - MIR SINE MIR -46 162 50 1876 121 80 39 chr3 23728887 23729275 -194307883 + L1MB3 LINE L1 5740 6143 -40 257 200 0 0 chr3 23729297 23729347 -194307811 + L1MB2 LINE L1 6115 6164 -7 1231 183 5 36 chr3 23729801 23730025 -194307133 - AluJo SINE Alu -10 302 86 513 194 62 44 chr3 23730276 23730436 -194306722 - L1MC4 LINE L1 -139 7903 7741 700 275 116 72 chr3 23731680 23732069 -194305089 - L2 LINE L2 0 3313 2908 251 343 84 14 chr3 23732307 23732450 -194304708 - L3b LINE CR1 -100 1483 1331 2246 103 3 19 chr3 23733108 23733420 -194303738 - AluSx SINE Alu -5 307 1 203 196 22 0 chr3 23733650 23733696 -194303462 + L2 LINE L2 3210 3256 -16 189 171 0 0 chr3 23733992 23734027 -194303131 + A-rich Low_complexity Low_complexity 1 35 0 652 240 13 7 chr3 23734685 23734839 -194302319 + MER3 DNA MER1_type 1 155 -54 2164 131 0 0 chr3 23734842 23735140 -194302018 + AluSx SINE Alu 4 301 -11 1426 105 5 0 chr3 23735247 23735437 -194301721 + AluSg/x SINE Alu 106 296 -16 25 0 0 0 chr3 23735444 23735469 -194301689 + AT_rich Low_complexity Low_complexity 1 25 0 317 313 129 79 chr3 23735672 23736075 -194301083 - L2 LINE L2 -14 3258 2836 2455 70 0 10 chr3 23736381 23736683 -194300475 + AluY SINE Alu 1 299 -12 610 189 9 0 chr3 23736711 23736847 -194300311 + AluJb SINE Alu 180 316 0 2008 137 3 17 chr3 23736979 23737279 -194299879 - AluSx SINE Alu -16 296 1 302 265 88 52 chr3 23737777 23737913 -194299245 + MIR SINE MIR 110 250 -12 237 235 68 53 chr3 23738345 23738477 -194298681 + MER102a DNA MER1_type 189 322 -8 723 284 15 20 chr3 23738557 23738761 -194298397 - MIR SINE MIR -17 245 43 243 293 13 0 chr3 23739180 23739255 -194297903 + HAL1 LINE L1 1651 1726 -781 * 602 234 117 12 chr3 23739244 23739500 -194297658 + HAL1 LINE L1 2072 2354 -153 270 30 0 0 chr3 23739644 23739677 -194297481 - U2 snRNA snRNA -155 33 1 982 205 24 0 chr3 23739681 23739847 -194297311 - FAM SINE Alu -3 172 3 193 260 14 82 chr3 23739882 23739955 -194297203 - L2 LINE L2 -575 2739 2672 * 216 254 0 18 chr3 23739927 23739982 -194297176 - MER5B DNA MER1_type -105 73 20 265 290 0 75 chr3 23741395 23741488 -194295670 - L2 LINE L2 0 3272 3187 454 360 40 18 chr3 23741615 23741843 -194295315 - MIR SINE MIR -10 252 20 1575 144 0 0 chr3 23741899 23742128 -194295030 + AluJb SINE Alu 1 229 -83 1147 151 0 22 chr3 23742580 23742759 -194294399 - AluJ SINE Alu -9 303 129 844 137 0 38 chr3 23742777 23742908 -194294250 + FLAM_C SINE Alu 1 126 -7 524 120 40 0 chr3 23742920 23742995 -194294163 - AluJ SINE Alu -176 136 59 1956 147 23 0 chr3 23743411 23743711 -194293447 - AluJb SINE Alu -1 311 5 2718 149 11 7 chr3 23744077 23744534 -194292624 + LTR32 LTR ERVL 12 470 -1 2097 97 4 0 chr3 23744690 23744957 -194292201 + AluSq SINE Alu 5 272 -41 4514 72 40 2 chr3 23744958 23745541 -194291617 - LTR14B LTR ERVK 0 608 4 989 232 29 37 chr3 23745741 23745982 -194291176 - MER8 DNA MER2_type 0 239 1 638 176 21 114 chr3 23745982 23746091 -194291067 + Charlie4 DNA MER1_type 1778 1866 -95 1822 177 0 32 chr3 23746091 23746401 -194290757 + AluJb SINE Alu 1 300 -12 638 176 21 114 chr3 23746401 23746473 -194290685 + Charlie4 DNA MER1_type 1866 1943 -18 244 235 39 0 chr3 23746591 23746642 -194290516 + MIR SINE MIR 29 81 -181 550 215 83 14 chr3 23746687 23746831 -194290327 + MIR SINE MIR 70 223 -39 2239 119 0 0 chr3 23747004 23747297 -194289861 + AluSx SINE Alu 1 293 -19 600 279 59 10 chr3 23747343 23747547 -194289611 - LTR16C LTR ERVL 0 491 278 942 206 47 12 chr3 23748736 23748993 -194288165 + L1ME1 LINE L1 5846 6111 -55 2232 118 7 0 chr3 23749044 23749341 -194287817 + AluSx SINE Alu 1 299 -13 335 91 0 0 chr3 23749342 23749386 -194287772 + Alu SINE Alu 1 44 -258 229 132 0 0 chr3 23749466 23749504 -194287654 - Charlie5 DNA MER1_type -27 2585 2548 1285 194 18 122 chr3 23749508 23749837 -194287321 - AluJb SINE Alu -7 295 1 24 0 0 0 chr3 23749842 23749866 -194287292 + AT_rich Low_complexity Low_complexity 1 24 0 977 132 7 0 chr3 23749869 23750005 -194287153 + AluSq/x SINE Alu 1 137 -175 2284 113 0 3 chr3 23750006 23750298 -194286860 + AluSg SINE Alu 4 294 -16 243 297 0 11 chr3 23750309 23750400 -194286758 + Charlie5 DNA MER1_type 2491 2580 -32 630 109 11 0 chr3 23752462 23752554 -194284604 + MLT1A2 LTR MaLR 1 93 -281 1229 102 0 68 chr3 23752557 23752597 -194284561 - MSTA LTR MaLR -2 426 385 2190 131 0 10 chr3 23752597 23752911 -194284247 + AluSx SINE Alu 1 311 -1 1229 102 0 68 chr3 23752911 23753075 -194284083 - MSTA LTR MaLR -43 385 236 1068 162 0 0 chr3 23753120 23753287 -194283871 - AluSx SINE Alu -2 308 142 1021 104 0 56 chr3 23753346 23753490 -194283668 - AluSx SINE Alu -177 136 1 906 196 42 0 chr3 23753490 23753679 -194283479 - MSTA LTR MaLR -231 197 1 403 174 0 0 chr3 23753679 23753748 -194283410 + MLT1A2 LTR MaLR 90 158 -216 2233 109 13 0 chr3 23754376 23754678 -194282480 + AluSq SINE Alu 1 306 -7 402 253 167 43 chr3 23754913 23755075 -194282083 - MIR3 SINE MIR -17 191 10 2184 78 19 85 chr3 23755589 23755908 -194281250 - AluSq SINE Alu -15 298 1 2319 116 0 0 chr3 23757529 23757832 -194279326 + AluSq SINE Alu 6 308 -5 323 271 32 65 chr3 23758181 23758336 -194278822 + L1MC5 LINE L1 7763 7912 -49 484 36 0 0 chr3 23759824 23759880 -194277278 - AluSq/x SINE Alu -175 138 83 2036 108 0 18 chr3 23760357 23760643 -194276515 + AluSq SINE Alu 1 281 -32 470 259 121 20 chr3 23761284 23761589 -194275569 + L1MC5 LINE L1 7609 7944 -17 2083 138 3 0 chr3 23761752 23762050 -194275108 + AluSx SINE Alu 1 299 -13 233 390 40 0 chr3 23762229 23762329 -194274829 - L3b LINE CR1 -184 1399 1296 315 219 184 9 chr3 23762554 23762668 -194274490 - MIR3 SINE MIR -38 170 37 231 356 79 0 chr3 23763687 23763788 -194273370 + L2 LINE L2 3200 3308 -5 1860 153 27 20 chr3 23765181 23765482 -194271676 - AluJb SINE Alu -9 303 1 187 237 0 26 chr3 23765561 23765599 -194271559 - L2 LINE L2 -86 3186 3150 791 220 49 4 chr3 23765615 23765819 -194271339 + MIR SINE MIR 27 238 -24 1028 185 34 15 chr3 23766104 23766309 -194270849 + MER3 DNA MER1_type 1 209 0 2138 189 12 24 chr3 23766570 23766989 -194270169 - MLT2D LTR ERVL 0 414 1 1733 147 62 7 chr3 23767112 23767404 -194269754 + AluJb SINE Alu 1 308 -4 797 252 125 49 chr3 23767799 23768271 -194268887 + MLT1J LTR MaLR 2 509 -2 2113 111 31 14 chr3 23768757 23768884 -194268274 + AluSx SINE Alu 1 124 -188 2358 96 7 3 chr3 23768884 23769187 -194267971 + AluSg SINE Alu 1 304 -6 2113 111 31 14 chr3 23769187 23769347 -194267811 + AluSx SINE Alu 124 293 -19 459 276 97 42 chr3 23769638 23769855 -194267303 + MLT1K LTR MaLR 162 390 -198 182 361 62 0 chr3 23770518 23770615 -194266543 + MIR SINE MIR 94 196 -66 250 340 11 0 chr3 23770941 23771035 -194266123 + MIR SINE MIR 168 262 0 583 297 80 25 chr3 23771085 23771324 -194265834 - MIR SINE MIR -7 255 4 1838 163 3 36 chr3 23771382 23771688 -194265470 - AluSx SINE Alu -16 296 1 199 333 11 46 chr3 23772127 23772214 -194264944 - L3b LINE CR1 -63 1520 1437 811 245 96 71 chr3 23772284 23772814 -194264344 + MLT1H1 LTR MaLR 2 555 0 450 0 0 0 chr3 23773422 23773472 -194263686 + (CA)n Simple_repeat Simple_repeat 2 51 0 238 263 114 0 chr3 23774400 23774514 -194262644 - L1ME4a LINE L1 -21 6100 5974 328 211 133 37 chr3 23774520 23774720 -194262438 - MER5C DNA MER1_type -4 320 41 2169 125 7 0 chr3 23774752 23775049 -194262109 + AluSx SINE Alu 1 299 -13 2072 131 10 0 chr3 23775385 23775683 -194261475 + AluJo SINE Alu 1 301 -11 1755 133 16 0 chr3 23775689 23775937 -194261221 + AluSx SINE Alu 1 252 -60 315 0 0 0 chr3 23775957 23775992 -194261166 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 605 215 37 0 chr3 23776575 23776710 -194260448 - MIR SINE MIR -118 144 5 301 298 162 44 chr3 23777063 23777291 -194259867 + L2 LINE L2 3006 3260 -12 512 298 186 21 chr3 23778138 23778558 -194258600 + L2 LINE L2 2820 3308 -5 1812 166 7 3 chr3 23778564 23778859 -194258299 + AluSx SINE Alu 1 296 -16 1709 192 99 12 chr3 23779375 23779896 -194257262 - MER82 DNA MER2_type -9 644 23 2113 70 0 114 chr3 23779907 23780249 -194256909 + AluSg SINE Alu 1 303 -7 286 300 67 0 chr3 23780478 23780568 -194256590 + L2 LINE L2 3193 3288 -25 970 217 65 7 chr3 23780637 23780913 -194256245 + MER33 DNA MER1_type 28 319 -5 246 294 152 0 chr3 23781133 23781225 -194255933 + L2 LINE L2 3184 3289 -24 1515 156 0 43 chr3 23781277 23781534 -194255624 + AluJo SINE Alu 5 250 -62 435 196 0 62 chr3 23781710 23781822 -194255336 + MER3 DNA MER1_type 52 156 -53 1152 141 0 0 chr3 23781826 23781989 -194255169 + AluSg/x SINE Alu 133 295 -17 272 196 18 0 chr3 23781991 23782047 -194255111 + MER3 DNA MER1_type 153 209 0 243 191 0 0 chr3 23785110 23785173 -194251985 + CT-rich Low_complexity Low_complexity 1 63 0 631 225 0 0 chr3 23786356 23786476 -194250682 + FLAM_C SINE Alu 8 127 -16 485 171 166 68 chr3 23787155 23787272 -194249886 - MER2 DNA MER2_type 0 345 241 789 132 0 37 chr3 23787272 23787408 -194249750 + FLAM_C SINE Alu 1 131 -2 485 171 166 68 chr3 23787408 23787495 -194249663 - MER2 DNA MER2_type -104 241 121 1445 169 0 5 chr3 23787505 23787724 -194249434 + AluJb SINE Alu 11 228 -84 405 245 15 21 chr3 23787874 23788201 -194248957 + G-rich Low_complexity Low_complexity 1 325 0 357 247 53 12 chr3 23788128 23788298 -194248860 + (CGGGG)n Simple_repeat Simple_repeat 2 178 0 * 906 284 120 18 chr3 23788350 23788807 -194248351 - L2 LINE L2 -1056 2258 1755 189 107 0 0 chr3 23788999 23789027 -194248131 + (A)n Simple_repeat Simple_repeat 1 28 0 1871 149 0 0 chr3 23789502 23789777 -194247381 + AluJb SINE Alu 35 309 -3 198 244 24 0 chr3 23789785 23789826 -194247332 - MIR SINE MIR -220 42 1 2992 102 9 11 chr3 23789890 23789949 -194247209 + L1PA15 LINE L1 5721 5779 -386 2146 126 30 0 chr3 23789949 23790250 -194246908 + AluSx SINE Alu 3 312 0 2992 102 9 11 chr3 23790250 23790623 -194246535 + L1PA15 LINE L1 5779 6152 -13 237 189 75 0 chr3 23790630 23790683 -194246475 - MER41B LTR ERV1 -98 537 481 2178 163 73 29 chr3 23790769 23791179 -194245979 + MSTA LTR MaLR 1 428 0 9930 159 16 16 chr3 23791179 23791528 -194245630 + MSTA-int LTR MaLR 1 349 -1302 2416 97 0 3 chr3 23791528 23791839 -194245319 + AluSg SINE Alu 1 310 0 9930 159 16 16 chr3 23791839 23793141 -194244017 + MSTA-int LTR MaLR 349 1651 0 2200 137 77 50 chr3 23793141 23793518 -194243640 + MSTA LTR MaLR 1 391 -37 2390 109 0 0 chr3 23793518 23793820 -194243338 - AluSg SINE Alu -8 302 1 2200 137 77 50 chr3 23793820 23793859 -194243299 + MSTA LTR MaLR 391 428 0 316 286 160 11 chr3 23793859 23794034 -194243124 + MIR SINE MIR 61 261 -1 2363 109 0 0 chr3 23794211 23794514 -194242644 + AluSg SINE Alu 1 303 -7 764 179 0 57 chr3 23794518 23794658 -194242500 + AluJo SINE Alu 1 132 -170 2014 92 3 35 chr3 23794662 23794978 -194242180 + AluY SINE Alu 2 307 -4 1566 235 3 3 chr3 23795278 23795584 -194241574 - AluJo SINE Alu -6 306 1 314 177 38 0 chr3 23796738 23796817 -194240341 + (CCCCG)n Simple_repeat Simple_repeat 2 83 0 227 130 19 0 chr3 23796837 23796891 -194240267 + C-rich Low_complexity Low_complexity 3 57 0 30 0 0 0 chr3 23796975 23797005 -194240153 + GC_rich Low_complexity Low_complexity 1 30 0 1139 169 0 0 chr3 23797185 23797363 -194239795 + AluJo SINE Alu 120 297 -15 1566 235 3 3 chr3 23797439 23797745 -194239413 - AluJo SINE Alu -6 306 1 358 303 56 79 chr3 23798658 23798925 -194238233 + LTR16C LTR ERVL 231 491 0 255 152 0 0 chr3 23798963 23799009 -194238149 + T-rich Low_complexity Low_complexity 1 46 0 2453 86 3 3 chr3 23799813 23800115 -194237043 - AluSp SINE Alu -11 302 1 1586 150 18 71 chr3 23800239 23800579 -194236579 - L1MC1 LINE L1 0 6333 6012 1881 169 0 26 chr3 23800739 23801052 -194236106 + AluJo SINE Alu 1 305 -7 1904 149 21 0 chr3 23801244 23801532 -194235626 + AluSx SINE Alu 1 294 -18 1449 176 23 46 chr3 23801785 23802092 -194235066 - AluJb SINE Alu -12 300 1 1775 158 23 20 chr3 23802467 23802771 -194234387 - AluJo SINE Alu -7 305 1 297 237 53 38 chr3 23802771 23802841 -194234317 - L1M4 LINE L1 -2256 3890 3816 720 238 59 25 chr3 23802841 23803043 -194234115 - MER63A DNA MER1_type -1 209 1 297 237 53 38 chr3 23803043 23803103 -194234055 - L1M4 LINE L1 -2330 3816 3758 613 243 35 7 chr3 23803205 23803349 -194233809 + MER5B DNA MER1_type 31 178 0 619 189 141 5 chr3 23803357 23803518 -194233640 - MER5A DNA MER1_type 0 189 4 471 343 60 16 chr3 23803549 23803797 -194233361 - L1M4 LINE L1 -2581 3565 3307 1574 168 10 30 chr3 23803835 23804138 -194233020 + AluJb SINE Alu 7 303 -9 467 313 31 19 chr3 23804341 23804501 -194232657 - L2 LINE L2 0 3313 3152 1875 113 60 0 chr3 23804501 23804783 -194232375 + AluSq SINE Alu 1 299 -14 2051 118 3 0 chr3 23804786 23805105 -194232053 + AluSp SINE Alu 1 320 0 25 0 0 0 chr3 23805430 23805455 -194231703 + GC_rich Low_complexity Low_complexity 1 25 0 1559 147 40 0 chr3 23806211 23806484 -194230674 + AluSx SINE Alu 22 305 -7 1873 138 17 0 chr3 23806579 23806876 -194230282 - AluJo SINE Alu -10 302 1 1875 167 74 54 chr3 23806914 23807416 -194229742 + Charlie1b DNA MER1_type 1 512 -11 587 287 21 5 chr3 23807500 23807688 -194229470 - MER113 DNA MER1_type? -96 425 235 2018 124 0 0 chr3 23807868 23808159 -194228999 + AluY SINE Alu 1 291 -20 692 191 38 0 chr3 23808185 23808316 -194228842 - MER2 DNA MER2_type -209 136 1 263 237 79 0 chr3 23808334 23808410 -194228748 + L1ME4a LINE L1 5936 6017 -104 1076 150 0 0 chr3 23808565 23808732 -194228426 + AluSp SINE Alu 137 303 -10 673 263 31 13 chr3 23808732 23808973 -194228185 - L2 LINE L2 -311 3002 2759 756 275 45 28 chr3 23809077 23809324 -194227834 - L2 LINE L2 -1886 1428 1178 577 319 10 0 chr3 23809388 23809592 -194227566 + L2 LINE L2 966 1171 -2143 302 167 0 0 chr3 23809593 23809635 -194227523 - Alu SINE Alu -261 42 1 1984 100 45 3 chr3 23809662 23809953 -194227205 - AluSg SINE Alu -7 303 1 1641 137 10 40 chr3 23810217 23810516 -194226642 + AluJo SINE Alu 16 305 -7 1595 192 0 3 chr3 23810638 23810929 -194226229 + AluJo SINE Alu 1 290 -22 2032 112 7 7 chr3 23812010 23812325 -194224833 + AluSx SINE Alu 3 312 0 793 98 0 0 chr3 23812327 23812429 -194224729 + U6 snRNA snRNA 1 102 -5 240 346 39 70 chr3 23812475 23812732 -194224426 + L3 LINE CR1 179 427 -1150 509 300 31 19 chr3 23812904 23813064 -194224094 - L2 LINE L2 0 3313 3152 1863 117 60 0 chr3 23813064 23813346 -194223812 + AluSq SINE Alu 1 299 -14 2051 118 3 0 chr3 23813349 23813668 -194223490 + AluSp SINE Alu 1 320 0 389 265 178 29 chr3 23813760 23813986 -194223172 + L2 LINE L2 2826 3112 -201 1889 126 91 31 chr3 23813986 23814336 -194222822 + THE1C LTR MaLR 3 373 -2 389 265 178 29 chr3 23814336 23814418 -194222740 + L2 LINE L2 3112 3180 -133 834 140 0 44 chr3 23814422 23814558 -194222600 - FLAM_C SINE Alu -3 130 1 1726 287 39 43 chr3 23814590 23815290 -194221868 - L2 LINE L2 -542 2772 2076 868 302 115 12 chr3 23815870 23816271 -194220887 + MLT1J2 LTR MaLR 1 442 -8 490 316 96 36 chr3 23816340 23816590 -194220568 + L3 LINE CR1 436 700 -877 495 92 0 0 chr3 23816741 23816806 -194220352 + AluJ/FRAM SINE Alu 233 297 -15 216 266 102 31 chr3 23816815 23816943 -194220215 + L3 LINE CR1 785 921 -656 248 360 43 43 chr3 23817062 23817116 -194220042 + L3 LINE CR1 1301 1354 -223 447 52 0 0 chr3 23817116 23817174 -194219984 + (TG)n Simple_repeat Simple_repeat 2 59 0 1356 196 60 4 chr3 23817181 23817446 -194219712 - AluJo SINE Alu -30 282 3 248 360 43 43 chr3 23817446 23817547 -194219611 + L3 LINE CR1 1359 1464 -113 398 147 15 0 chr3 23817551 23817619 -194219539 + MER116 DNA Mariner 12 80 0 999 255 97 118 chr3 23817668 23818186 -194218972 - MLT1K LTR MaLR -25 563 57 303 291 68 17 chr3 23818255 23818372 -194218786 - L2 LINE L2 -308 3005 2883 917 248 114 35 chr3 23818372 23818713 -194218445 - MLT1G1 LTR MaLR 0 595 214 2266 79 7 0 chr3 23818713 23819016 -194218142 - AluY SINE Alu -5 306 2 917 248 114 35 chr3 23819016 23819049 -194218109 - MLT1G1 LTR MaLR -381 214 185 982 278 102 35 chr3 23819185 23819239 -194217919 - L2 LINE L2 -449 2865 2816 1102 203 37 5 chr3 23819239 23819456 -194217702 + MER58A DNA MER1_type 1 224 0 982 278 102 35 chr3 23819456 23819775 -194217383 - L2 LINE L2 -498 2816 2467 24 0 0 0 chr3 23820009 23820033 -194217125 + AT_rich Low_complexity Low_complexity 1 24 0 1781 155 7 7 chr3 23820033 23820324 -194216834 - AluSx SINE Alu -21 291 1 1333 165 12 35 chr3 23820734 23821012 -194216146 - AluJb SINE Alu 0 309 38 1728 165 35 0 chr3 23821222 23821507 -194215651 + AluSx SINE Alu 1 295 -17 2009 103 3 10 chr3 23821552 23821854 -194215304 + AluY SINE Alu 1 300 -11 298 292 14 0 chr3 23822389 23822461 -194214697 - L2 LINE L2 0 3313 3241 188 359 26 0 chr3 23822561 23822639 -194214519 - L2 LINE L2 -220 3052 2973 442 284 168 0 chr3 23822715 23822870 -194214288 + MER5A DNA MER1_type 9 189 0 210 338 42 0 chr3 23822875 23822946 -194214212 - MIR3 SINE MIR -53 155 82 321 286 12 0 chr3 23823322 23823406 -194213752 + L1MEd LINE L1 586 670 -5449 1889 135 20 3 chr3 23823427 23823724 -194213434 + AluSx SINE Alu 1 302 -10 1224 170 9 5 chr3 23824228 23824446 -194212712 - AluJo SINE Alu -17 295 77 2156 101 10 0 chr3 23824510 23824808 -194212350 + AluSx SINE Alu 1 301 -11 2035 109 7 0 chr3 23825586 23825869 -194211289 - AluSx SINE Alu -25 287 3 1595 192 0 3 chr3 23826963 23827254 -194209904 - AluJo SINE Alu -22 290 1 1641 137 10 40 chr3 23827376 23827675 -194209483 - AluJo SINE Alu -7 305 16 2019 100 45 0 chr3 23827939 23828229 -194208929 + AluSg SINE Alu 1 303 -7 302 167 0 0 chr3 23828256 23828298 -194208860 + Alu SINE Alu 1 42 -260 577 319 10 0 chr3 23828299 23828503 -194208655 - L2 LINE L2 -2143 1171 966 756 275 45 28 chr3 23828567 23828814 -194208344 + L2 LINE L2 1178 1428 -1886 673 263 31 13 chr3 23828918 23829159 -194207999 + L2 LINE L2 2759 3002 -311 1076 150 0 0 chr3 23829159 23829326 -194207832 - AluSp SINE Alu -10 303 137 263 237 79 0 chr3 23829481 23829557 -194207601 - L1ME4a LINE L1 -104 6017 5936 692 191 38 0 chr3 23829575 23829706 -194207452 + MER2 DNA MER2_type 1 136 -209 967 147 32 0 chr3 23829732 23829889 -194207269 - AluJb SINE Alu -20 292 131 1690 169 0 29 chr3 23830140 23830454 -194206704 - AluJo SINE Alu -7 305 1 1552 153 18 71 chr3 23830614 23830954 -194206204 + L1MC1 LINE L1 6012 6333 0 2167 108 3 0 chr3 23831078 23831373 -194205785 + AluSx SINE Alu 1 296 -16 3536 141 34 9 chr3 23831378 23831956 -194205202 - LTR8A LTR ERV1 -50 677 60 44182 46 4 2 chr3 23831956 23838022 -194199136 + L1PA4 LINE L1 20 6094 -61 1636 181 3 16 chr3 23838423 23838727 -194198431 - AluJb SINE Alu -12 300 1 26 50 0 0 chr3 23838877 23838917 -194198241 + AT_rich Low_complexity Low_complexity 1 40 0 32 67 0 0 chr3 23839070 23839130 -194198028 + AT_rich Low_complexity Low_complexity 1 60 0 1425 175 4 4 chr3 23840069 23840321 -194196837 - AluJo SINE Alu -26 286 35 289 291 58 0 chr3 23840374 23840460 -194196698 + MIR SINE MIR 160 250 -12 2467 52 20 0 chr3 23841035 23841340 -194195818 + AluY SINE Alu 1 311 0 192 308 45 70 chr3 23841979 23842135 -194195023 + L2 LINE L2 2900 3051 -221 2133 98 7 0 chr3 23842659 23842956 -194194202 - AluSq SINE Alu -13 300 2 1000 213 29 53 chr3 23843027 23843416 -194193742 - MER74A LTR ERVL 0 558 131 407 219 12 0 chr3 23843452 23843534 -194193624 - MER74A LTR ERVL -434 124 42 353 244 33 0 chr3 23843540 23843630 -194193528 - L1 LINE L1 -1678 4468 4376 22609 126 51 25 chr3 23844041 23845956 -194191202 + L1MA3 LINE L1 16 1878 -5846 2584 91 14 3 chr3 23845956 23846307 -194190851 - THE1A LTR MaLR 0 355 1 11826 90 10 5 chr3 23846307 23847879 -194189279 - THE1A-int LTR MaLR 0 1580 1 2854 51 17 3 chr3 23847879 23848229 -194188929 - THE1A LTR MaLR 0 355 1 22609 126 51 25 chr3 23848229 23848717 -194188441 + L1MA3 LINE L1 1878 2352 -5372 2074 103 0 3 chr3 23848717 23849008 -194188150 + AluY SINE Alu 1 290 -21 22609 126 51 25 chr3 23849008 23849646 -194187512 + L1MA3 LINE L1 2352 2972 -4752 1237 177 117 8 chr3 23849646 23849911 -194187247 + AluJb SINE Alu 1 294 -18 22609 126 51 25 chr3 23849911 23851204 -194185954 + L1MA3 LINE L1 2972 4229 -3495 2160 114 0 10 chr3 23851204 23851512 -194185646 + AluSx SINE Alu 1 305 -7 22609 126 51 25 chr3 23851512 23852351 -194184807 + L1MA3 LINE L1 4229 5044 -2680 1721 162 6 22 chr3 23852351 23852666 -194184492 + AluJb SINE Alu 1 310 -2 22609 126 51 25 chr3 23852666 23853357 -194183801 + L1MA3 LINE L1 5044 7724 0 878 298 140 20 chr3 23853465 23853871 -194183287 - LTR16B LTR ERVL -2 462 8 307 272 140 15 chr3 23854062 23854198 -194182960 + MIR SINE MIR 77 229 -33 184 333 15 0 chr3 23854652 23854718 -194182440 + MIR3 SINE MIR 88 154 -54 1170 126 6 0 chr3 23854727 23854901 -194182257 + MER5B DNA MER1_type 4 178 0 814 172 30 30 chr3 23855266 23855435 -194181723 - L1ME3 LINE L1 -45 6117 5949 290 279 155 0 chr3 23855593 23855722 -194181436 - MLT1H LTR MaLR -19 530 382 1739 179 132 26 chr3 23855829 23855882 -194181276 + LTR65 LTR ERV1 3 49 -620 2581 129 58 17 chr3 23855882 23856293 -194180865 + MSTA LTR MaLR 1 428 0 1739 179 132 26 chr3 23856293 23856657 -194180501 + LTR65 LTR ERV1 49 464 -205 281 114 57 136 chr3 23856670 23856758 -194180400 + L1MB7 LINE L1 6096 6176 -2 2043 151 0 0 chr3 23856951 23857262 -194179896 - AluJb SINE Alu -1 311 1 964 200 6 0 chr3 23857426 23857606 -194179552 + LTR65 LTR ERV1 489 669 0 465 244 10 57 chr3 23857682 23857848 -194179310 - MLT1F LTR MaLR -240 169 1 830 123 8 16 chr3 23859247 23859369 -194177789 - L1MC1 LINE L1 -1 6332 6212 1859 164 11 0 chr3 23859395 23859676 -194177482 - AluSx SINE Alu -28 284 1 583 245 117 12 chr3 23860541 23860704 -194176454 + MER5A DNA MER1_type 1 180 -9 584 184 12 7 chr3 23861073 23861311 -194175847 + MLT1F1 LTR MaLR 2 372 -170 403 276 167 13 chr3 23862161 23862317 -194174841 - MIR SINE MIR -69 193 14 2083 173 5 67 chr3 23862339 23862450 -194174708 + MLT1B LTR MaLR 1 117 -273 2415 85 0 10 chr3 23862450 23862756 -194174402 + AluSg SINE Alu 1 303 -7 2083 173 5 67 chr3 23862756 23863060 -194174098 + MLT1B LTR MaLR 117 390 0 2218 103 38 0 chr3 23863496 23863788 -194173370 - AluSx SINE Alu -9 303 1 200 299 146 22 chr3 23863860 23863997 -194173161 - L2 LINE L2 0 3313 3160 2202 154 31 8 chr3 23864002 23864358 -194172800 + MLT1A1 LTR MaLR 2 365 0 2060 147 0 0 chr3 23864491 23864791 -194172367 - AluSx SINE Alu -8 304 5 209 191 59 73 chr3 23865451 23865519 -194171639 - MIR SINE MIR -180 82 16 208 280 133 40 chr3 23865549 23865699 -194171459 - L2 LINE L2 -160 3112 2949 284 270 226 7 chr3 23866053 23866190 -194170968 + MIR SINE MIR 7 173 -89 318 266 39 23 chr3 23866704 23866832 -194170326 - MLT1G1 LTR MaLR -465 130 1 1129 256 158 10 chr3 23866834 23867500 -194169658 + L2 LINE L2 2524 3313 0 1792 149 7 7 chr3 23867504 23867810 -194169348 + AluSx SINE Alu 1 306 0 30 27 0 0 chr3 23868758 23868795 -194168363 + AT_rich Low_complexity Low_complexity 1 37 0 256 217 0 117 chr3 23869397 23869517 -194167641 + MIR SINE MIR 106 211 -51 494 204 136 14 chr3 23869614 23869761 -194167397 + MER103 DNA DNA 2 166 0 4263 181 55 0 chr3 23870672 23871468 -194165690 - L1ME1 LINE L1 -5 6161 5322 240 111 0 0 chr3 23871468 23871504 -194165654 + (TTCC)n Simple_repeat Simple_repeat 1 36 0 914 159 27 104 chr3 23871505 23871725 -194165433 - AluJb SINE Alu -24 288 86 1958 142 0 0 chr3 23871750 23872032 -194165126 - AluSx SINE Alu -18 294 13 1520 209 22 43 chr3 23872043 23872489 -194164669 - L1ME1 LINE L1 -821 5325 4889 410 285 231 8 chr3 23872469 23872725 -194164433 - L1MC4a LINE L1 -1974 5834 5522 * 1178 227 126 66 chr3 23873867 23874383 -194162775 - MLT1H LTR MaLR 0 549 3 393 245 201 0 chr3 23874450 23874589 -194162569 - MIR SINE MIR -65 197 31 245 172 35 0 chr3 23875459 23875517 -194161641 + GA-rich Low_complexity Low_complexity 1 60 0 420 104 0 0 chr3 23875520 23875587 -194161571 + (CA)n Simple_repeat Simple_repeat 2 68 0 234 246 18 0 chr3 23877169 23877226 -194159932 - Charlie4 DNA MER1_type -4 1957 1900 556 179 45 0 chr3 23877303 23877415 -194159743 + L2 LINE L2 3197 3313 0 629 286 47 20 chr3 23877600 23878039 -194159119 - LTR33 LTR ERVL 0 521 19 238 330 42 34 chr3 23878402 23878520 -194158638 - L2 LINE L2 -1 3271 3153 2282 97 3 3 chr3 23879051 23879349 -194157809 + AluSp SINE Alu 1 298 -15 488 262 18 37 chr3 23879581 23879745 -194157413 - MLT1H LTR MaLR 0 549 389 532 238 45 21 chr3 23879864 23880022 -194157136 - MIR SINE MIR -58 150 36 678 111 0 10 chr3 23880133 23880232 -194156926 - AluSg/x SINE Alu -9 303 206 266 209 110 22 chr3 23880741 23880832 -194156326 - L1MC5 LINE L1 -23 7938 7840 2512 78 0 0 chr3 23880951 23881260 -194155898 - AluY SINE Alu -2 309 1 1864 141 0 27 chr3 23881270 23881569 -194155589 - AluJb SINE Alu -21 291 1 1818 148 7 7 chr3 23881596 23881873 -194155285 + AluSx SINE Alu 1 277 -35 931 234 24 5 chr3 23882064 23882269 -194154889 + MER3 DNA MER1_type 1 209 0 2030 119 3 10 chr3 23882318 23882611 -194154547 + AluSc SINE Alu 1 291 -18 2205 116 0 0 chr3 23883158 23883450 -194153708 + AluSq SINE Alu 1 292 -21 354 321 107 6 chr3 23884368 23884536 -194152622 - L1MC/D LINE L1 -2163 5645 5461 1774 161 76 20 chr3 23885214 23885556 -194151602 - MER46B DNA MER2_type 0 236 1 2280 88 0 10 chr3 23886749 23887044 -194150114 - AluSg SINE Alu -18 292 1 2285 115 3 10 chr3 23887395 23887709 -194149449 + AluSx SINE Alu 1 312 0 683 230 75 5 chr3 23887717 23887904 -194149254 + MIR SINE MIR 3 202 -60 325 228 53 26 chr3 23888202 23888316 -194148842 + L1MC4 LINE L1 7926 8042 0 566 234 98 33 chr3 23888994 23889178 -194147980 - L1ME LINE L1 -414 5707 5512 368 236 154 16 chr3 23889329 23889452 -194147706 + MIR SINE MIR 75 214 -48 356 330 88 71 chr3 23889467 23889819 -194147339 - L2 LINE L2 0 3272 2915 2393 90 0 0 chr3 23890149 23890450 -194146708 + AluSq SINE Alu 1 301 -12 1331 193 0 36 chr3 23890951 23891225 -194145933 + AluJo SINE Alu 39 302 -10 705 234 61 51 chr3 23891573 23891934 -194145224 - L1MEc LINE L1 -4706 1877 1445 22 0 0 0 chr3 23892180 23892202 -194144956 + AT_rich Low_complexity Low_complexity 1 22 0 336 276 145 26 chr3 23892213 23892456 -194144702 + L1ME4a LINE L1 5549 5762 -359 2119 125 0 10 chr3 23892456 23892761 -194144397 - AluSc SINE Alu -7 302 1 336 276 145 26 chr3 23892761 23892796 -194144362 + L1ME4a LINE L1 5762 5791 -330 1633 181 7 7 chr3 23892796 23893095 -194144063 + AluJb SINE Alu 1 299 -13 336 276 145 26 chr3 23893095 23893307 -194143851 + L1ME4a LINE L1 5791 6119 -2 21 95 0 0 chr3 23893342 23893405 -194143753 + AT_rich Low_complexity Low_complexity 1 63 0 1570 184 7 17 chr3 23894263 23894551 -194142607 - AluJb SINE Alu -25 287 3 828 212 5 52 chr3 23894857 23895050 -194142108 + MER5A DNA MER1_type 2 185 -4 463 188 0 10 chr3 23896344 23896445 -194140713 + L1MEc LINE L1 715 814 -5582 2093 121 0 38 chr3 23896446 23896761 -194140397 - AluSx SINE Alu -9 303 1 12200 65 5 1 chr3 23896784 23899113 -194138045 - L1PA6 LINE L1 0 6154 3893 4530 70 51 14 chr3 23899113 23899759 -194137399 + L1PA6 LINE L1 3229 3898 -2248 3661 110 18 75 chr3 23899776 23900404 -194136754 - L1PB2 LINE L1 -3 6148 5557 225 65 0 0 chr3 23903620 23903651 -194133507 + (CAG)n Simple_repeat Simple_repeat 2 32 0 297 152 106 15 chr3 23903700 23903766 -194133392 - MER103 DNA DNA -33 133 62 207 0 0 0 chr3 23903905 23903928 -194133230 + (TC)n Simple_repeat Simple_repeat 2 24 0 2377 149 50 36 chr3 23903979 23904456 -194132702 - L1MB2 LINE L1 -6 6165 5682 1616 174 26 19 chr3 23904776 23905086 -194132072 - AluJb SINE Alu 0 312 1 1540 199 51 3 chr3 23905089 23905263 -194131895 - AluJb SINE Alu -2 310 115 192 77 0 0 chr3 23905263 23905289 -194131869 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1540 199 51 3 chr3 23905289 23905410 -194131748 - AluJb SINE Alu -197 115 1 2532 54 0 7 chr3 23905834 23906131 -194131027 + AluSc SINE Alu 1 295 -14 1799 157 3 20 chr3 23906387 23906692 -194130466 + AluJo SINE Alu 1 300 -12 587 259 23 8 chr3 23908834 23908965 -194128193 + FLAM_A SINE Alu 1 133 0 261 252 74 96 chr3 23909919 23910014 -194127144 - MLT1L LTR MaLR 0 615 522 2225 101 0 7 chr3 23910014 23910310 -194126848 + AluSg1 SINE Alu 1 294 -15 261 252 74 96 chr3 23910310 23910349 -194126809 - MLT1L LTR MaLR -93 522 484 479 285 68 38 chr3 23910465 23910728 -194126430 - MLT1L LTR MaLR -324 291 21 823 110 47 47 chr3 23912258 23912269 -194124889 - AluJo SINE Alu -178 134 124 216 0 0 0 chr3 23912269 23912293 -194124865 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 823 110 47 47 chr3 23912293 23912408 -194124750 - AluJo SINE Alu -187 125 8 833 144 40 0 chr3 23912528 23912653 -194124505 - FLAM_C SINE Alu -3 130 1 641 161 190 33 chr3 23914955 23915166 -194121992 - Charlie1 DNA MER1_type -94 2667 2424 1162 170 47 28 chr3 23915314 23915526 -194121632 - MER20 DNA MER1_type -2 217 2 1358 136 47 21 chr3 23915973 23916208 -194120950 - MER2 DNA MER2_type -96 249 9 348 277 55 118 chr3 23916214 23916294 -194120864 + L1MC4a LINE L1 5606 5689 -432 1800 173 0 26 chr3 23916294 23916601 -194120557 + AluJb SINE Alu 5 303 -9 348 277 55 118 chr3 23916601 23916750 -194120408 + L1MC4a LINE L1 5689 5815 -306 2122 104 3 11 chr3 23916750 23917037 -194120121 + AluSx SINE Alu 1 285 -27 348 277 55 118 chr3 23917037 23917123 -194120035 + L1MC4a LINE L1 5815 5905 -216 1770 168 81 12 chr3 23917158 23917480 -194119678 + MER2 DNA MER2_type 1 344 0 1689 174 22 4 chr3 23917987 23918263 -194118895 + AluJo SINE Alu 1 281 -31 711 278 128 26 chr3 23919253 23919487 -194117671 + MIR SINE MIR 5 262 0 201 200 40 20 chr3 23921205 23921255 -194115903 + (TATATG)n Simple_repeat Simple_repeat 6 56 0 2806 267 146 42 chr3 23921675 23921959 -194115199 + L2 LINE L2 1525 1778 -1535 180 0 0 0 chr3 23921959 23921979 -194115179 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2145 108 0 3 chr3 23921981 23922269 -194114889 - AluSx SINE Alu -25 287 1 2806 267 146 42 chr3 23922269 23923057 -194114101 + L2 LINE L2 1778 2483 -830 1646 173 14 11 chr3 23923057 23923335 -194113823 - AluJo SINE Alu -1 311 33 2806 267 146 42 chr3 23923335 23923891 -194113267 + L2 LINE L2 2483 3311 -2 354 367 105 46 chr3 23923865 23924170 -194112988 - L2 LINE L2 -10 3262 2940 * 2207 115 0 0 chr3 23924184 23924472 -194112686 + AluSx SINE Alu 1 288 -24 22 0 0 0 chr3 23924691 23924713 -194112445 + AT_rich Low_complexity Low_complexity 1 22 0 1800 153 17 3 chr3 23924818 23925113 -194112045 + AluJo SINE Alu 1 299 -13 1076 202 37 125 chr3 23925161 23925376 -194111782 + L1ME3A LINE L1 5728 5891 -273 2097 134 7 3 chr3 23925376 23925682 -194111476 + AluSx SINE Alu 1 307 -5 1076 202 37 125 chr3 23925682 23925874 -194111284 + L1ME3A LINE L1 5891 6098 -66 211 175 0 0 chr3 23926182 23926222 -194110936 - L2 LINE L2 -2 3311 3272 22 0 0 0 chr3 23926287 23926309 -194110849 + AT_rich Low_complexity Low_complexity 1 22 0 202 137 118 0 chr3 23926442 23926493 -194110665 + MIR SINE MIR 81 137 -71 910 210 116 17 chr3 23928990 23929223 -194107935 - L3 LINE CR1 -11 1566 1311 231 159 32 63 chr3 23929366 23929429 -194107729 + MARNA DNA Mariner 10 70 -516 898 242 42 12 chr3 23930712 23930952 -194106206 - MIR SINE MIR 0 262 16 413 232 30 20 chr3 23931096 23931195 -194105963 - L2 LINE L2 -11 3261 3162 1242 157 32 14 chr3 23932236 23932452 -194104706 - L1PA15 LINE L1 -7 6158 5939 1233 255 50 12 chr3 23932600 23932941 -194104217 + L1MC1 LINE L1 3 356 -6186 828 219 26 10 chr3 23932942 23933134 -194104024 + L1MC1 LINE L1 2951 3145 -3499 1750 89 0 0 chr3 23933134 23933347 -194103811 + AluSq SINE Alu 79 291 -22 5055 194 139 78 chr3 23933350 23933964 -194103194 + L1MC1 LINE L1 3541 4116 -2715 2212 93 14 0 chr3 23933964 23934254 -194102904 + AluSp SINE Alu 1 294 -19 5055 194 139 78 chr3 23934254 23934407 -194102751 + L1MC1 LINE L1 4116 4258 -2573 1090 165 0 6 chr3 23934407 23934577 -194102581 + AluJb SINE Alu 85 253 -59 5055 194 139 78 chr3 23934577 23935959 -194101199 + L1MC1 LINE L1 4258 6025 -806 2431 97 0 0 chr3 23935959 23936269 -194100889 - AluSx SINE Alu -2 310 1 5055 194 139 78 chr3 23936269 23936399 -194100759 + L1MC1 LINE L1 6025 6146 -685 772 161 22 0 chr3 23936399 23936536 -194100622 + L1MC1 LINE L1 6421 6560 -271 823 243 80 13 chr3 23936997 23937223 -194099935 + MIR SINE MIR 22 262 0 407 276 21 48 chr3 23937285 23937511 -194099647 + MIR SINE MIR 56 242 -20 872 313 40 29 chr3 23937639 23938083 -194099075 - LTR16B LTR ERVL -2 462 14 323 253 123 39 chr3 23938329 23938483 -194098675 + MIR SINE MIR 81 247 -15 2355 97 0 3 chr3 23939055 23939366 -194097792 - AluSx SINE Alu -2 310 1 656 262 35 23 chr3 23939717 23939889 -194097269 + MIR SINE MIR 40 213 -49 945 286 74 15 chr3 23939925 23940264 -194096894 + MLT1H1 LTR MaLR 1 359 -196 319 140 88 0 chr3 23940316 23940373 -194096785 + MLT1H1 LTR MaLR 450 511 -19 1413 215 133 52 chr3 23940625 23941128 -194096030 - LTR10B LTR ERV1 -3 544 1 2368 107 0 0 chr3 23941148 23941458 -194095700 + AluSx SINE Alu 1 310 -2 363 307 79 0 chr3 23941560 23941687 -194095471 - MIR3 SINE MIR -42 166 30 2243 102 7 0 chr3 23942216 23942510 -194094648 + AluSp SINE Alu 1 296 -17 837 142 156 0 chr3 23942510 23942651 -194094507 + AluSg/x SINE Alu 134 296 -16 786 112 112 26 chr3 23943228 23943344 -194093814 + AluSp SINE Alu 2 127 -186 273 290 61 53 chr3 23943804 23943935 -194093223 + MIR SINE MIR 56 187 -75 998 189 22 0 chr3 23943971 23944156 -194093002 - MER5A DNA MER1_type 0 189 1 1767 227 93 47 chr3 23944556 23944912 -194092246 - MLT1F LTR MaLR 0 542 153 2235 100 3 0 chr3 23944912 23945202 -194091956 - AluSg SINE Alu -19 291 1 1767 227 93 47 chr3 23945202 23945361 -194091797 - MLT1F LTR MaLR -389 153 3 775 282 85 20 chr3 23945488 23945935 -194091223 + LTR33 LTR ERVL 39 514 -7 1044 307 49 43 chr3 23945992 23946181 -194090977 + MLT1K LTR MaLR 2 188 -400 2314 92 3 0 chr3 23946181 23946476 -194090682 + AluY SINE Alu 1 296 -15 1044 307 49 43 chr3 23946476 23946817 -194090341 + MLT1K LTR MaLR 188 535 -53 202 267 0 0 chr3 23946817 23946862 -194090296 + GA-rich Low_complexity Low_complexity 3 47 0 189 0 0 0 chr3 23947068 23947089 -194090069 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 233 285 146 13 chr3 23947216 23947374 -194089784 + MIR SINE MIR 51 229 -33 1934 250 32 26 chr3 23947783 23948118 -194089040 + MLT1F LTR MaLR 2 343 -199 2194 176 31 64 chr3 23948118 23948601 -194088557 - MLT1C LTR MaLR 0 467 1 1934 250 32 26 chr3 23948601 23948801 -194088357 + MLT1F LTR MaLR 343 540 -2 2249 53 0 0 chr3 23952971 23953290 -194083868 + AluY SINE Alu 21 339 0 889 183 0 0 chr3 23953302 23953475 -194083683 - FLAM_A SINE Alu 0 173 1 766 261 52 63 chr3 23953509 23953728 -194083430 + L1MC/D LINE L1 5258 5473 -2335 2027 149 0 0 chr3 23953728 23954030 -194083128 - AluJb SINE Alu -8 304 3 766 261 52 63 chr3 23954030 23954193 -194082965 + L1MC/D LINE L1 5473 5636 -2172 1195 127 6 0 chr3 23954196 23954369 -194082789 - AluSp SINE Alu -3 310 137 2012 74 0 31 chr3 23954606 23954864 -194082294 + AluY SINE Alu 50 299 -12 659 247 17 28 chr3 23955828 23956006 -194081152 - MER5B DNA MER1_type -2 176 1 888 208 147 116 chr3 23956407 23956628 -194080530 - L1ME4a LINE L1 0 6121 5908 2162 124 3 0 chr3 23956628 23956934 -194080224 + AluSq SINE Alu 1 307 -6 888 208 147 116 chr3 23956934 23957199 -194079959 - L1ME4a LINE L1 -213 5908 5612 2127 116 20 0 chr3 23957199 23957491 -194079667 - AluSx SINE Alu -14 298 1 888 208 147 116 chr3 23957491 23957580 -194079578 - L1ME4a LINE L1 -509 5612 5527 1026 176 54 17 chr3 23957610 23957996 -194079162 + LTR37B LTR ERV1 4 468 0 2247 151 33 3 chr3 23958333 23958670 -194078488 + MER7A DNA MER2_type 2 346 0 1168 295 199 29 chr3 23959412 23960397 -194076761 + L3 LINE CR1 322 1473 -104 479 246 47 35 chr3 23961137 23961308 -194075850 + MER5B DNA MER1_type 1 173 -5 244 206 234 19 chr3 23961348 23961455 -194075703 + MER5A DNA MER1_type 40 169 -20 * 486 146 101 0 chr3 23961380 23961469 -194075689 - MER5A DNA MER1_type -83 106 9 1400 215 35 24 chr3 23964034 23964374 -194072784 - MER2 DNA MER2_type 0 344 1 645 268 179 30 chr3 23964969 23965376 -194071782 - L2 LINE L2 -31 3282 2815 479 298 32 27 chr3 23965375 23965563 -194071595 + L2 LINE L2 2615 2803 -511 * 199 346 0 0 chr3 23967477 23967529 -194069629 - MIR SINE MIR -127 81 30 1463 96 0 10 chr3 23967595 23967793 -194069365 + AluSg/x SINE Alu 99 294 -16 901 208 27 11 chr3 23967887 23968070 -194069088 - MER5A DNA MER1_type 0 189 4 470 215 108 8 chr3 23968419 23968549 -194068609 + L1MEd LINE L1 16 158 -5961 2180 102 3 3 chr3 23969299 23969608 -194067550 + AluSq SINE Alu 1 309 0 1337 176 12 33 chr3 23969793 23970037 -194067121 + AluJb SINE Alu 1 239 -73 1836 157 33 13 chr3 23970510 23970816 -194066342 - AluJo SINE Alu 0 312 1 6529 136 75 45 chr3 23971453 23971466 -194065692 + L1MC1 LINE L1 318 329 -6097 2226 78 4 0 chr3 23971466 23971795 -194065363 + AluY SINE Alu 1 330 0 6529 136 75 45 chr3 23971795 23972297 -194064861 + L1MC1 LINE L1 329 814 -5612 1738 135 31 35 chr3 23972297 23972586 -194064572 + AluSx SINE Alu 1 288 -24 6529 136 75 45 chr3 23972586 23973340 -194063818 + L1MC1 LINE L1 814 1633 -4793 2174 131 147 11 chr3 23973340 23973715 -194063443 - MSTA LTR MaLR 0 428 3 6529 136 75 45 chr3 23973715 23973772 -194063386 + L1MC1 LINE L1 1633 1687 -4739 2491 231 24 23 chr3 23973783 23974080 -194063078 + L1MC1 LINE L1 2287 2582 -3844 2561 122 34 6 chr3 23974080 23974434 -194062724 + THE1B LTR MaLR 1 364 0 2491 231 24 23 chr3 23974434 23975423 -194061735 + L1MC1 LINE L1 2582 3677 -2749 2497 80 0 0 chr3 23975423 23975724 -194061434 + AluSq SINE Alu 3 303 -10 2491 231 24 23 chr3 23975724 23976028 -194061130 + L1MC1 LINE L1 3677 3979 -2447 2051 224 37 26 chr3 23976028 23976517 -194060641 + MLT2B2 LTR ERVL 1 494 -21 5571 107 102 28 chr3 23976517 23977602 -194059556 + MER11A LTR ERVK 1 1266 0 841 223 0 38 chr3 23977628 23977683 -194059475 + L1MC1 LINE L1 3974 4030 -2396 497 73 118 0 chr3 23977683 23977751 -194059407 + MADE1 DNA Mariner 1 76 -4 841 223 0 38 chr3 23977751 23977879 -194059279 + L1MC1 LINE L1 4030 4150 -2276 696 198 8 0 chr3 23977879 23978000 -194059158 + AluJb SINE Alu 179 300 -12 2950 214 62 67 chr3 23978000 23978496 -194058662 + L1MC1 LINE L1 4168 4665 -1761 2391 77 20 0 chr3 23978496 23978793 -194058365 + AluY SINE Alu 1 303 -8 2950 214 62 67 chr3 23978793 23979059 -194058099 + L1MC1 LINE L1 4665 4928 -1498 1566 181 3 36 chr3 23979059 23979368 -194057790 + AluJo SINE Alu 6 304 -8 2950 214 62 67 chr3 23979368 23979580 -194057578 + L1MC1 LINE L1 4928 5139 -1287 645 173 0 153 chr3 23979581 23979731 -194057427 - FLAM_A SINE Alu -10 132 6 4178 153 34 69 chr3 23979738 23980188 -194056970 + L1MC1 LINE L1 5123 5587 -1026 2199 95 20 10 chr3 23980188 23980492 -194056666 + AluSc SINE Alu 1 307 -2 4178 153 34 69 chr3 23980492 23980692 -194056466 + L1MC1 LINE L1 5587 5792 -821 2198 101 0 7 chr3 23980692 23980988 -194056170 - AluSp SINE Alu -19 294 1 4178 153 34 69 chr3 23980988 23981525 -194055633 + L1MC1 LINE L1 5792 6286 -327 1192 202 9 0 chr3 23981525 23981732 -194055426 + L1MC1 LINE L1 6119 6333 0 1012 310 88 47 chr3 23981732 23982424 -194054734 + L1ME3A LINE L1 169 896 -5223 1971 158 3 0 chr3 23982424 23982728 -194054430 + AluJb SINE Alu 1 305 -7 1012 310 88 47 chr3 23982728 23982746 -194054412 + L1ME3A LINE L1 896 912 -5207 242 256 83 23 chr3 23982784 23982906 -194054252 + L1ME3A LINE L1 1021 1153 -4966 1777 173 36 7 chr3 23982906 23983207 -194053951 + AluJo SINE Alu 1 310 -2 460 279 198 19 chr3 23983248 23983556 -194053602 + L1ME3A LINE L1 1153 1515 -4614 187 175 25 38 chr3 23983752 23983832 -194053326 + GA-rich Low_complexity Low_complexity 3 81 0 1554 229 219 16 chr3 23984101 23984607 -194052551 + MLT1E1 LTR MaLR 39 647 -7 582 295 48 53 chr3 23984615 23985089 -194052069 + HAL1b LINE L1 181 652 -696 345 259 0 27 chr3 23985112 23985224 -194051934 + HAL1b LINE L1 733 841 -507 360 274 79 24 chr3 23985231 23985395 -194051763 + L1ME3A LINE L1 3090 3262 -2867 892 150 14 0 chr3 23985522 23985662 -194051496 - AluSg/x SINE Alu -7 305 164 371 312 93 60 chr3 23985926 23986195 -194050963 - MLT1J LTR MaLR -137 374 97 576 125 231 81 chr3 23986219 23986379 -194050779 - MER53 DNA DNA -3 186 3 271 95 0 0 chr3 23986512 23986554 -194050604 - L1MC5 LINE L1 -436 7525 7484 501 245 198 35 chr3 23986819 23987269 -194049889 + MLT1H LTR MaLR 1 549 0 584 278 180 19 chr3 23987276 23987950 -194049208 + L1ME3A LINE L1 4940 5753 -408 236 229 74 90 chr3 23987970 23988092 -194049066 + L1ME3A LINE L1 5948 6067 -86 2363 85 0 0 chr3 23988535 23988829 -194048329 - AluSc SINE Alu -9 300 7 1469 55 76 114 chr3 23990249 23990486 -194046672 + MER30 DNA MER1_type 1 228 -2 450 292 62 25 chr3 23990974 23991135 -194046023 - MER5B DNA MER1_type -4 174 8 2215 131 3 0 chr3 23991254 23991559 -194045599 - AluSx SINE Alu -6 306 1 308 217 64 77 chr3 23991610 23991740 -194045418 + L1ME3 LINE L1 6040 6332 -2 2587 135 8 3 chr3 23991839 23992201 -194044957 + THE1B LTR MaLR 1 364 0 10962 101 30 62 chr3 23992203 23993648 -194043510 + THE1B-int LTR MaLR 3 1392 -188 2388 81 0 0 chr3 23993648 23993945 -194043213 - AluY SINE Alu -14 297 1 10962 101 30 62 chr3 23993945 23994129 -194043029 + THE1B-int LTR MaLR 1392 1580 0 2542 108 14 6 chr3 23994131 23994484 -194042674 + THE1B LTR MaLR 8 363 -1 600 196 77 14 chr3 23996370 23996513 -194040645 - MIR SINE MIR -106 156 5 420 322 40 40 chr3 23996533 23996682 -194040476 + L2 LINE L2 3124 3272 0 214 346 63 79 chr3 23997442 23997696 -194039462 - L2 LINE L2 0 3272 3023 582 237 8 8 chr3 23997890 23998008 -194039150 + FLAM_A SINE Alu 1 118 -15 508 267 144 78 chr3 23998036 23998306 -194038852 - L2 LINE L2 -25 3247 2960 375 311 18 30 chr3 23998312 23998476 -194038682 - L2 LINE L2 -852 2462 2301 812 253 118 0 chr3 23998715 23998936 -194038222 - MIR SINE MIR -15 247 1 2137 94 14 0 chr3 23999000 23999275 -194037883 + AluSp SINE Alu 1 279 -34 315 49 0 0 chr3 23999290 23999331 -194037827 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 466 258 40 7 chr3 23999949 24000100 -194037058 + L1M4 LINE L1 2724 2879 -3267 483 189 36 0 chr3 24000116 24000227 -194036931 + L1M4 LINE L1 3208 3322 -2824 * 1292 218 73 46 chr3 24000222 24000745 -194036413 + L1M4 LINE L1 2876 3412 -2734 293 124 56 101 chr3 24001321 24001410 -194035748 - L1ME4a LINE L1 -3 6118 6034 2469 100 0 0 chr3 24001410 24001720 -194035438 + AluSx SINE Alu 1 310 -2 1363 192 22 11 chr3 24002293 24002569 -194034589 + AluJo SINE Alu 19 297 -15 228 67 0 0 chr3 24002896 24002926 -194034232 + (TG)n Simple_repeat Simple_repeat 2 31 0 2314 86 0 26 chr3 24003193 24003495 -194033663 - AluSc SINE Alu -15 294 1 2298 83 7 20 chr3 24003544 24003709 -194033449 - AluSq SINE Alu -15 298 137 2342 93 7 0 chr3 24003709 24004010 -194033148 - AluSp SINE Alu -10 303 1 2298 83 7 20 chr3 24004010 24004146 -194033012 - AluSq SINE Alu -176 137 1 417 208 0 0 chr3 24004659 24004736 -194032422 + MER103 DNA DNA 51 127 -39 183 288 25 88 chr3 24005770 24005850 -194031308 - L2 LINE L2 -3 3310 3236 2121 122 3 32 chr3 24006031 24006343 -194030815 + AluSx SINE Alu 2 304 -8 349 286 38 68 chr3 24006346 24006430 -194030728 + MIR SINE MIR 23 103 -159 2248 118 0 3 chr3 24006430 24006734 -194030424 + AluSx SINE Alu 1 303 -9 349 286 38 68 chr3 24006734 24006782 -194030376 + MIR SINE MIR 103 151 -111 234 261 0 15 chr3 24006812 24006877 -194030281 + MIR SINE MIR 137 200 -62 1624 209 0 7 chr3 24006882 24007178 -194029980 - AluJb SINE Alu -18 294 1 1204 204 46 24 chr3 24007433 24007761 -194029397 + MER2 DNA MER2_type 2 336 -9 320 269 0 54 chr3 24007983 24008076 -194029082 - L1MC4 LINE L1 -1340 6702 6615 236 229 0 83 chr3 24008078 24008174 -194028984 + L1MC4 LINE L1 6615 6702 -1340 324 202 0 111 chr3 24008212 24008311 -194028847 + L1MC4 LINE L1 6615 6702 -1340 * 340 221 11 63 chr3 24008284 24008379 -194028779 - L1MC4 LINE L1 -1339 6703 6614 21 36 0 0 chr3 24008392 24008420 -194028738 + AT_rich Low_complexity Low_complexity 1 28 0 1093 174 72 81 chr3 24008745 24009079 -194028079 + L1MA9 LINE L1 5946 6276 -36 2212 83 0 3 chr3 24009141 24009430 -194027728 - AluSx SINE Alu -19 293 6 270 124 56 101 chr3 24009435 24009524 -194027634 + L1ME4a LINE L1 6034 6118 -3 194 253 0 25 chr3 24009779 24009858 -194027300 + (CATATA)n Simple_repeat Simple_repeat 5 81 0 305 336 29 0 chr3 24009858 24009962 -194027196 - L1MC4 LINE L1 -1322 6720 6614 560 416 0 0 chr3 24009968 24010323 -194026835 + (CGTG)n Simple_repeat Simple_repeat 1 355 0 195 250 0 0 chr3 24010390 24010442 -194026716 + (TA)n Simple_repeat Simple_repeat 1 52 0 274 233 0 44 chr3 24010444 24010534 -194026624 - L1MC4 LINE L1 -1342 6700 6615 1690 165 0 20 chr3 24010537 24010834 -194026324 - AluJb SINE Alu -21 291 1 2216 93 0 13 chr3 24011100 24011413 -194025745 - AluSc SINE Alu 0 309 1 2050 117 3 3 chr3 24012160 24012459 -194024699 - AluSx SINE Alu -13 299 1 1883 168 0 0 chr3 24012688 24012997 -194024161 - AluJb SINE Alu -3 309 1 419 246 8 87 chr3 24013461 24013587 -194023571 + FLAM_A SINE Alu 1 116 -17 1886 155 3 0 chr3 24013590 24013900 -194023258 - AluJb SINE Alu -1 311 1 617 180 18 0 chr3 24013900 24014011 -194023147 - MLT1B LTR MaLR -277 113 1 417 288 159 12 chr3 24014040 24014203 -194022955 + MIR SINE MIR 21 207 -55 215 346 63 18 chr3 24015515 24015622 -194021536 - MIR SINE MIR -79 129 49 2294 91 0 0 chr3 24015622 24015919 -194021239 - AluSg SINE Alu -13 297 1 215 346 63 18 chr3 24015919 24015954 -194021204 - MIR SINE MIR -159 49 17 1048 167 24 33 chr3 24016869 24017079 -194020079 - MER3 DNA MER1_type 0 209 2 316 264 82 150 chr3 24017609 24017962 -194019196 - L2 LINE L2 -50 3222 2894 1576 158 12 0 chr3 24018848 24019107 -194018051 + AluSx SINE Alu 25 286 -26 2317 57 0 0 chr3 24019297 24019638 -194017520 - AluY SINE Alu 0 341 1 24 0 0 0 chr3 24019641 24019665 -194017493 + AT_rich Low_complexity Low_complexity 1 24 0 1672 123 105 4 chr3 24019683 24019960 -194017198 - AluSx SINE Alu -7 305 1 2163 107 7 0 chr3 24020991 24021299 -194015859 - AluSg SINE Alu 0 310 1 387 351 27 0 chr3 24021450 24021598 -194015560 + MIR SINE MIR 47 198 -64 370 141 202 50 chr3 24021582 24021681 -194015477 - L2 LINE L2 0 3313 3200 * 21 0 0 0 chr3 24021913 24021934 -194015224 + AT_rich Low_complexity Low_complexity 1 21 0 182 215 38 139 chr3 24022182 24022220 -194014938 + L3 LINE CR1 822 862 -715 489 257 46 29 chr3 24022220 24022395 -194014763 + MER5B DNA MER1_type 1 178 0 497 264 196 0 chr3 24022395 24022543 -194014615 - MER5A DNA MER1_type -12 177 1 182 215 38 139 chr3 24022395 24022514 -194014644 + L3 LINE CR1 862 963 -614 * 2075 183 87 28 chr3 24022567 24023026 -194014132 - MLT1D LTR MaLR -2 503 18 1075 179 50 10 chr3 24023113 24023314 -194013844 - LTR16C LTR ERVL 0 491 283 340 273 152 15 chr3 24023681 24023813 -194013345 - MIR SINE MIR -14 248 99 784 289 47 16 chr3 24023870 24024123 -194013035 + MIR SINE MIR 2 262 0 387 282 43 17 chr3 24025619 24025736 -194011422 + MIR3 SINE MIR 85 204 -4 256 33 0 0 chr3 24025941 24025971 -194011187 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 522 188 0 19 chr3 24025971 24026125 -194011033 + C-rich Low_complexity Low_complexity 3 153 0 1559 150 15 11 chr3 24026127 24026400 -194010758 - AluJb SINE Alu -38 274 1 534 276 55 0 chr3 24026405 24026550 -194010608 + MIR SINE MIR 104 256 -6 2400 44 0 14 chr3 24026639 24026936 -194010222 - AluY SINE Alu -18 293 1 285 283 202 25 chr3 24027022 24027220 -194009938 + MIR SINE MIR 21 253 -9 890 143 0 0 chr3 24027825 24027958 -194009200 - FLAM_C SINE Alu -10 133 1 43 47 0 0 chr3 24027968 24028032 -194009126 + AT_rich Low_complexity Low_complexity 1 64 0 495 223 23 39 chr3 24028052 24028182 -194008976 + L1MC/D LINE L1 5442 5569 -2239 188 260 271 10 chr3 24028371 24028467 -194008691 + MIR3 SINE MIR 15 135 -73 311 290 30 10 chr3 24028629 24028729 -194008429 + L1MC4a LINE L1 4976 5077 -1069 342 0 0 0 chr3 24028798 24028835 -194008323 - tRNA-Gly-GGG tRNA tRNA -37 37 1 318 254 190 14 chr3 24028841 24028983 -194008175 + L1MC4a LINE L1 5156 5322 -824 1502 269 32 13 chr3 24028987 24029072 -194008086 + L1MC4a LINE L1 5351 5433 -2375 1741 152 4 4 chr3 24029072 24029348 -194007810 + AluJb SINE Alu 1 276 -36 1502 269 32 13 chr3 24029348 24029723 -194007435 + L1MC4a LINE L1 5433 5820 -1988 839 168 0 0 chr3 24029731 24029868 -194007290 + FLAM_C SINE Alu 6 142 -1 371 246 40 137 chr3 24029879 24029921 -194007237 + L1MC4a LINE L1 5832 5876 -1932 1550 188 55 0 chr3 24029921 24030214 -194006944 + 7SLRNA srpRNA srpRNA 1 309 -11 371 246 40 137 chr3 24030214 24030419 -194006739 + L1MC4a LINE L1 5876 6055 -1753 197 300 30 50 chr3 24030615 24030715 -194006443 - MIR3 SINE MIR -6 202 105 362 280 36 52 chr3 24031781 24031856 -194005302 - L1MC4 LINE L1 0 8042 7967 1958 155 9 79 chr3 24031856 24031934 -194005224 + MLT1B LTR MaLR 1 83 -307 2114 111 0 16 chr3 24031934 24032250 -194004908 - AluSx SINE Alu -1 311 1 1958 155 9 79 chr3 24032250 24032590 -194004568 + MLT1B LTR MaLR 83 390 0 362 280 36 52 chr3 24032590 24032707 -194004451 - L1MC4 LINE L1 -75 7967 7853 550 245 82 31 chr3 24033038 24033197 -194003961 + MIR SINE MIR 31 197 -65 513 296 77 0 chr3 24033243 24033412 -194003746 - MLT1J2 LTR MaLR -7 443 262 406 282 165 20 chr3 24033772 24033934 -194003224 + MIR SINE MIR 30 214 -48 253 135 0 0 chr3 24034055 24034092 -194003066 - MER117 DNA MER1_type -107 90 54 1680 170 7 0 chr3 24034113 24034401 -194002757 + AluSx SINE Alu 1 290 -22 2244 102 0 3 chr3 24034410 24034713 -194002445 + AluSq SINE Alu 1 302 -11 2085 174 104 9 chr3 24034820 24035244 -194001914 - MER31B LTR ERV1 -2 464 1 621 268 60 6 chr3 24035819 24036002 -194001156 - MIR3 SINE MIR 0 208 16 231 158 61 0 chr3 24036072 24036154 -194001004 + (CAGAGA)n Simple_repeat Simple_repeat 4 90 0 249 227 30 30 chr3 24036238 24036304 -194000854 - MIR3 SINE MIR -19 189 124 262 233 44 56 chr3 24036643 24036733 -194000425 + L2 LINE L2 2972 3060 -212 632 274 98 5 chr3 24036864 24037068 -194000090 - MIR SINE MIR -20 242 20 1050 204 37 0 chr3 24037216 24037432 -193999726 + MER58A DNA MER1_type 1 224 0 240 111 0 0 chr3 24038321 24038357 -193998801 + (TG)n Simple_repeat Simple_repeat 1 36 0 2208 111 0 0 chr3 24039483 24039790 -193997368 + AluSx SINE Alu 1 307 -5 318 333 0 0 chr3 24039794 24039896 -193997262 - MIR3 SINE MIR -31 177 76 2324 215 61 20 chr3 24041111 24041655 -193995503 + MER90 LTR ERV1 8 573 -2 940 207 70 44 chr3 24041717 24041944 -193995214 + MIR SINE MIR 2 234 -28 548 302 88 60 chr3 24041952 24042237 -193994921 - L2 LINE L2 -2 3270 2978 189 130 111 37 chr3 24042287 24042341 -193994817 + L2 LINE L2 3238 3295 -18 200 344 41 16 chr3 24042598 24042720 -193994438 + L2 LINE L2 2715 2839 -475 1779 117 4 0 chr3 24042776 24043025 -193994133 - AluSx SINE Alu -62 250 1 1834 263 87 27 chr3 24043930 24044146 -193993012 + MER20B DNA MER1_type 35 237 -546 2394 57 0 3 chr3 24044146 24044442 -193992716 - AluY SINE Alu -16 295 1 1834 263 87 27 chr3 24044442 24044752 -193992406 + MER20B DNA MER1_type 237 616 -167 2298 98 0 0 chr3 24044752 24045049 -193992109 - AluSc SINE Alu -12 297 1 1834 263 87 27 chr3 24045049 24045220 -193991938 + MER20B DNA MER1_type 616 775 -8 326 275 0 0 chr3 24045548 24045628 -193991530 - L1ME LINE L1 -439 5731 5652 1040 218 4 9 chr3 24045921 24046150 -193991008 - L1ME LINE L1 -502 5668 5441 * 1270 221 117 28 chr3 24046143 24046536 -193990622 + L1ME3A LINE L1 5731 6158 -12 1562 137 3 83 chr3 24047889 24048240 -193988918 + MER33 DNA MER1_type 1 323 -1 333 281 52 0 chr3 24048789 24048885 -193988273 + MIR SINE MIR 92 192 -70 731 292 79 39 chr3 24049310 24049804 -193987354 + L2 LINE L2 2714 3221 -92 657 205 0 16 chr3 24049863 24049990 -193987168 + MER58B DNA MER1_type 217 341 0 302 343 28 19 chr3 24049991 24050099 -193987059 + L2 LINE L2 3204 3312 -1 399 217 118 94 chr3 24050429 24050608 -193986550 + MER5A DNA MER1_type 6 189 0 357 241 0 12 chr3 24050750 24050833 -193986325 - MER5B DNA MER1_type -3 175 94 213 39 0 0 chr3 24050838 24050864 -193986294 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1369 196 7 21 chr3 24050870 24051151 -193986007 - AluJb SINE Alu -35 277 1 431 237 0 0 chr3 24051152 24051249 -193985909 - MER5B DNA MER1_type -79 99 3 596 148 0 0 chr3 24051304 24051392 -193985766 + L1PA5 LINE L1 1 88 -6058 33137 58 61 9 chr3 24051392 24056645 -193980513 + L1PA5 LINE L1 617 6154 0 232 256 12 137 chr3 24058609 24058777 -193978381 + MER117 DNA MER1_type 51 197 0 369 211 147 51 chr3 24058931 24059087 -193978071 - LTR16A1 LTR ERVL -45 412 242 180 402 24 0 chr3 24060109 24060191 -193976967 + L3b LINE CR1 1400 1483 -100 521 184 9 9 chr3 24060397 24060506 -193976652 + Charlie5 DNA MER1_type 1 109 -2503 1467 189 68 6 chr3 24060510 24060875 -193976283 + Charlie5 DNA MER1_type 2237 2624 0 297 239 30 0 chr3 24062408 24062475 -193974683 + MIR3 SINE MIR 90 158 -50 207 114 0 0 chr3 24063066 24063101 -193974057 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1841 149 3 20 chr3 24063369 24063670 -193973488 + AluJb SINE Alu 1 296 -16 1254 178 18 9 chr3 24063755 24063980 -193973178 + AluJb SINE Alu 86 312 0 291 156 16 0 chr3 24064007 24064071 -193973087 - MER113 DNA MER1_type? -424 97 33 222 234 0 91 chr3 24066957 24067034 -193970124 - MER5A DNA MER1_type -2 187 118 357 271 16 74 chr3 24067085 24067207 -193969951 - MER5B DNA MER1_type -60 118 4 478 318 7 14 chr3 24067923 24068071 -193969087 - MIR3 SINE MIR -13 195 49 2189 119 6 10 chr3 24068193 24068505 -193968653 + AluSx SINE Alu 1 311 -1 265 227 21 93 chr3 24069464 24069561 -193967597 - MIR SINE MIR -87 175 86 373 297 120 37 chr3 24069640 24070072 -193967086 - L2 LINE L2 -61 3252 2745 193 200 154 31 chr3 24070087 24070152 -193967006 + MIR3 SINE MIR 111 183 -25 1752 119 78 44 chr3 24070920 24071215 -193965943 + AluSx SINE Alu 1 305 -7 24 0 0 0 chr3 24071233 24071257 -193965901 + AT_rich Low_complexity Low_complexity 1 24 0 2447 75 0 10 chr3 24071260 24071566 -193965592 + AluY SINE Alu 1 303 -8 288 276 35 43 chr3 24072032 24072148 -193965010 + MLT1K LTR MaLR 183 297 -291 2060 163 0 0 chr3 24072150 24072457 -193964701 - AluJb SINE Alu -5 307 1 231 194 28 56 chr3 24072626 24072698 -193964460 + MLT1K LTR MaLR 448 517 -71 189 253 147 27 chr3 24072902 24072977 -193964181 - MIR3 SINE MIR -19 189 106 364 212 61 0 chr3 24073357 24073456 -193963702 - Zaphod DNA AcHobo -1 4030 3926 730 150 0 95 chr3 24073456 24073603 -193963555 - FLAM_A SINE Alu 0 142 10 2075 117 91 57 chr3 24073603 24073955 -193963203 + THE1B LTR MaLR 1 364 0 459 176 14 0 chr3 24073955 24074029 -193963129 - FLAM_A SINE Alu -54 78 4 1650 280 66 14 chr3 24074031 24074589 -193962569 - MER115 DNA AcHobo -105 588 2 247 219 62 0 chr3 24074665 24074729 -193962429 + MIR3 SINE MIR 87 154 -54 1082 137 53 0 chr3 24075872 24076062 -193961096 + MSTB1 LTR MaLR 1 200 -232 2166 138 3 0 chr3 24076063 24076360 -193960798 + AluSp SINE Alu 1 298 -15 451 268 18 37 chr3 24076592 24076756 -193960402 - MLT1H LTR MaLR 0 549 389 560 238 45 21 chr3 24076875 24077033 -193960125 - MIR SINE MIR -58 150 36 2238 109 0 3 chr3 24077144 24077446 -193959712 - AluSg SINE Alu -9 301 1 2568 74 0 0 chr3 24078694 24079005 -193958153 + AluY SINE Alu 1 311 0 193 308 70 89 chr3 24079480 24079694 -193957464 + L2 LINE L2 256 465 -2849 2316 84 0 3 chr3 24080009 24080340 -193956818 + AluSx SINE Alu 1 330 0 228 221 91 39 chr3 24080584 24080661 -193956497 - MIR3 SINE MIR -49 159 79 349 306 149 53 chr3 24082066 24082422 -193954736 - L2 LINE L2 0 3313 2924 312 146 18 0 chr3 24082404 24082459 -193954699 - MER5B DNA MER1_type -5 173 118 * 563 30 0 0 chr3 24082459 24082547 -193954611 + L1PA3 LINE L1 6072 6159 0 2271 123 0 0 chr3 24082560 24082860 -193954298 + AluSx SINE Alu 1 300 -12 31 0 0 0 chr3 24082881 24082912 -193954246 + AT_rich Low_complexity Low_complexity 1 31 0 294 289 0 60 chr3 24082919 24083002 -193954156 - MER5B DNA MER1_type -57 121 44 2377 101 0 0 chr3 24083195 24083492 -193953666 + AluSx SINE Alu 1 297 -15 446 237 80 90 chr3 24083548 24083812 -193953346 - MLT1L LTR MaLR -13 602 233 2172 109 0 20 chr3 24084422 24084715 -193952443 + AluSg SINE Alu 1 287 -23 521 231 16 86 chr3 24084781 24084967 -193952191 - L1MC5 LINE L1 -36 7925 7753 2348 107 0 3 chr3 24085215 24085525 -193951633 + AluSx SINE Alu 1 309 -3 194 33 67 0 chr3 24086955 24086985 -193950173 + T-rich Low_complexity Low_complexity 2 33 0 263 240 194 16 chr3 24087119 24087248 -193949910 + MIR SINE MIR 93 244 -18 2107 131 0 32 chr3 24087373 24087687 -193949471 + AluJo SINE Alu 1 304 -8 184 310 0 35 chr3 24088085 24088143 -193949015 - MIR SINE MIR -78 184 129 188 135 27 0 chr3 24088523 24088560 -193948598 + CT-rich Low_complexity Low_complexity 2 39 0 235 247 93 52 chr3 24088572 24088669 -193948489 - L2 LINE L2 -1 3271 3171 587 188 88 59 chr3 24089885 24089972 -193947186 - MER3 DNA MER1_type 0 209 126 2237 117 0 0 chr3 24089972 24090270 -193946888 + AluSx SINE Alu 1 298 -14 587 188 88 59 chr3 24090270 24090352 -193946806 - MER3 DNA MER1_type -83 126 35 247 219 62 0 chr3 24092332 24092396 -193944762 - MIR3 SINE MIR -54 154 87 1650 280 66 14 chr3 24092472 24093030 -193944128 + MER115 DNA AcHobo 2 588 -105 459 176 14 0 chr3 24093032 24093106 -193944052 + FLAM_A SINE Alu 4 78 -54 2075 117 91 57 chr3 24093106 24093458 -193943700 - THE1B LTR MaLR 0 364 1 724 149 0 101 chr3 24093458 24093606 -193943552 + FLAM_A SINE Alu 10 142 0 364 212 61 0 chr3 24093606 24093705 -193943453 + Zaphod DNA AcHobo 3926 4030 -1 189 253 147 27 chr3 24094085 24094160 -193942998 + MIR3 SINE MIR 106 189 -19 231 194 28 56 chr3 24094364 24094436 -193942722 - MLT1K LTR MaLR -71 517 448 1869 192 0 0 chr3 24094605 24094917 -193942241 + AluJb SINE Alu 1 312 0 259 236 34 56 chr3 24094941 24095030 -193942128 - MLT1K LTR MaLR -319 269 183 2301 104 10 13 chr3 24095496 24095670 -193941488 - AluSx SINE Alu -5 307 133 2588 69 0 0 chr3 24095670 24095974 -193941184 - AluY SINE Alu -7 304 1 2301 104 10 13 chr3 24095974 24096107 -193941051 - AluSx SINE Alu -179 133 1 678 193 0 0 chr3 24096123 24096242 -193940916 - AluJo SINE Alu -176 136 18 527 247 44 25 chr3 24096324 24096482 -193940676 + MIR SINE MIR 20 180 -82 2282 112 7 3 chr3 24096505 24096809 -193940349 + AluSx SINE Alu 1 305 -7 252 282 0 0 chr3 24096915 24096986 -193940172 - MER90 LTR ERV1 -259 355 285 * 581 130 47 101 chr3 24096966 24097001 -193940157 - LTR65 LTR ERV1 -508 161 126 2115 121 17 7 chr3 24097001 24097298 -193939860 + AluSx SINE Alu 1 300 -12 581 130 47 101 chr3 24097298 24097431 -193939727 - LTR65 LTR ERV1 -543 126 2 692 231 114 9 chr3 24098051 24098297 -193938861 + MLT1H1 LTR MaLR 290 590 0 196 244 0 0 chr3 24098464 24098505 -193938653 - MIR3 SINE MIR -17 191 151 1044 228 169 34 chr3 24098544 24099017 -193938141 + MLT1H LTR MaLR 9 545 -4 258 32 0 0 chr3 24100100 24100131 -193937027 + (CA)n Simple_repeat Simple_repeat 1 31 0 975 123 0 0 chr3 24100655 24100785 -193936373 - FLAM_C SINE Alu -3 130 1 198 0 0 0 chr3 24100828 24100850 -193936308 + (A)n Simple_repeat Simple_repeat 1 22 0 195 329 47 0 chr3 24102553 24102638 -193934520 + MIR3 SINE MIR 115 203 -5 2191 136 7 0 chr3 24103517 24103825 -193933333 + AluSx SINE Alu 3 312 0 244 188 29 72 chr3 24104206 24104275 -193932883 + Charlie1 DNA MER1_type 7 72 -2689 958 142 0 45 chr3 24104350 24104526 -193932632 + MER20 DNA MER1_type 45 212 -7 1236 202 18 119 chr3 24104755 24105091 -193932067 + AluJo SINE Alu 1 302 0 2197 125 0 0 chr3 24105147 24105435 -193931723 + AluSx SINE Alu 4 291 -21 393 324 139 17 chr3 24106370 24106543 -193930615 + MIR3 SINE MIR 4 197 -11 679 226 53 0 chr3 24107268 24107401 -193929757 - FAM SINE Alu -45 140 1 263 278 144 0 chr3 24108144 24108241 -193928917 - L2 LINE L2 -4 3268 3158 462 238 48 0 chr3 24108306 24108411 -193928747 - Tigger3(Golem) DNA MER2_type 0 3029 2920 378 235 0 0 chr3 24108525 24108593 -193928565 - Tigger3(Golem) DNA MER2_type -2949 80 13 207 0 0 0 chr3 24109083 24109106 -193928052 + (T)n Simple_repeat Simple_repeat 1 23 0 827 93 0 0 chr3 24109123 24109230 -193927928 + U6 snRNA snRNA 1 107 0 264 291 94 0 chr3 24109240 24109357 -193927801 + MIR SINE MIR 135 262 0 455 91 0 65 chr3 24109471 24109548 -193927610 + AluJ/FRAM SINE Alu 224 295 -17 293 291 81 40 chr3 24110691 24110914 -193926244 + L2 LINE L2 2707 2938 -376 332 342 9 0 chr3 24111074 24111188 -193925970 + L2 LINE L2 3191 3305 -8 435 211 27 23 chr3 24111254 24111378 -193925780 - MIR3 SINE MIR -15 193 67 1746 165 0 4 chr3 24111863 24112142 -193925016 - AluJb SINE Alu -13 299 22 591 184 13 53 chr3 24112572 24112724 -193924434 - L1MC5 LINE L1 -48 7913 7768 807 142 8 15 chr3 24112987 24113121 -193924037 - FLAM_C SINE Alu 0 133 1 2374 87 0 0 chr3 24116105 24116394 -193920764 + AluSc SINE Alu 5 293 -16 297 212 93 85 chr3 24116623 24116741 -193920417 + FLAM_A SINE Alu 1 119 -14 33 43 0 0 chr3 24116741 24116788 -193920370 + AT_rich Low_complexity Low_complexity 1 47 0 456 285 93 23 chr3 24116843 24117057 -193920101 - MIR SINE MIR -28 234 6 232 266 42 35 chr3 24117622 24117765 -193919393 - L1MC4 LINE L1 -134 7908 7765 1721 185 7 0 chr3 24117773 24118070 -193919088 + AluJb SINE Alu 1 299 -13 1459 180 114 0 chr3 24118144 24118416 -193918742 - AluJb SINE Alu -9 303 1 1738 159 52 7 chr3 24118438 24118609 -193918549 - AluJb SINE Alu -9 303 112 186 43 0 0 chr3 24118609 24118632 -193918526 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1738 159 52 7 chr3 24118632 24118750 -193918408 - AluJb SINE Alu -200 112 1 747 138 17 0 chr3 24118750 24118866 -193918292 - AluJo SINE Alu -171 141 24 2343 101 10 0 chr3 24118921 24119227 -193917931 - AluSx SINE Alu -3 309 1 726 227 146 24 chr3 24119412 24119659 -193917499 - L1MC4 LINE L1 -550 7492 7216 33 56 0 0 chr3 24119663 24119717 -193917441 + AT_rich Low_complexity Low_complexity 1 54 0 1688 163 18 7 chr3 24119717 24119994 -193917164 - AluJo SINE Alu -32 280 1 1811 152 4 4 chr3 24119996 24120272 -193916886 - AluJb SINE Alu -11 301 26 375 172 0 0 chr3 24120273 24120331 -193916827 - AluJ/FLAM SINE Alu -244 58 1 1033 154 56 70 chr3 24120359 24120407 -193916751 + AluJo SINE Alu 84 131 -181 2314 83 20 13 chr3 24120407 24120707 -193916451 - AluSq SINE Alu -11 302 1 1033 154 56 70 chr3 24120707 24120872 -193916286 + AluJo SINE Alu 131 294 -18 433 288 68 37 chr3 24121076 24121375 -193915783 + MER109 Unknown Unknown 2 803 -1629 2350 191 38 23 chr3 24121382 24122034 -193915124 + MER109 Unknown Unknown 1 1324 -1108 735 295 72 52 chr3 24122064 24122186 -193914972 - L1MC4a LINE L1 -1923 5885 5767 2483 77 3 0 chr3 24122186 24122485 -193914673 + AluY SINE Alu 6 305 -6 735 295 72 52 chr3 24122485 24122847 -193914311 - L1MC4a LINE L1 -2041 5767 5391 443 241 18 9 chr3 24122885 24122997 -193914161 - L2 LINE L2 -1 3312 3200 1037 164 49 53 chr3 24123145 24123371 -193913787 - AluJo SINE Alu -1 311 87 851 121 32 0 chr3 24123467 24123591 -193913567 - FLAM_C SINE Alu -4 129 2 1406 253 63 36 chr3 24123678 24124538 -193912620 - L1MCb LINE L1 -4851 1194 597 324 298 79 0 chr3 24124732 24124846 -193912312 - L1MC4a LINE L1 -1328 4818 4696 2159 104 14 0 chr3 24124854 24125167 -193911991 - AluSg SINE Alu 0 317 1 726 217 56 7 chr3 24125169 24125312 -193911846 - FRAM SINE Alu -12 154 5 354 223 70 56 chr3 24125319 24125534 -193911624 - L1MC4a LINE L1 -1440 4706 4489 606 269 21 27 chr3 24125593 24125779 -193911379 - MER90 LTR ERV1 -7 568 384 1732 181 0 23 chr3 24125787 24126091 -193911067 + AluJo SINE Alu 1 297 -15 751 174 16 0 chr3 24126886 24127007 -193910151 + FLAM_C SINE Alu 2 124 -19 215 347 48 20 chr3 24127012 24127159 -193909999 + MIR SINE MIR 82 232 -30 210 37 0 0 chr3 24127275 24127302 -193909856 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1308 170 9 5 chr3 24127407 24127625 -193909533 - AluJo SINE Alu -17 295 77 2287 101 10 0 chr3 24127689 24127987 -193909171 + AluSx SINE Alu 1 301 -11 1792 169 14 3 chr3 24128754 24129049 -193908109 - AluJb SINE Alu -14 298 1 1843 165 35 0 chr3 24129094 24129379 -193907779 - AluSx SINE Alu -17 295 1 1429 165 12 35 chr3 24129589 24129867 -193907291 + AluJb SINE Alu 38 309 0 1899 155 7 7 chr3 24130277 24130568 -193906590 + AluSx SINE Alu 1 291 -21 24 0 0 0 chr3 24130568 24130592 -193906566 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 24130796 24130817 -193906341 + AT_rich Low_complexity Low_complexity 1 21 0 2224 112 0 7 chr3 24131149 24131445 -193905713 + AluSx SINE Alu 3 296 -16 976 134 18 43 chr3 24131466 24131630 -193905528 - AluJb SINE Alu -24 288 129 634 166 58 37 chr3 24131645 24131744 -193905414 + MER44D DNA MER2_type 1 96 -2391 1773 153 44 0 chr3 24131744 24132018 -193905140 + AluJb SINE Alu 14 299 -13 634 166 58 37 chr3 24132018 24132159 -193904999 + MER44D DNA MER2_type 96 604 -1 312 246 89 73 chr3 24132742 24132921 -193904237 - MIR3 SINE MIR -6 202 21 1120 164 4 58 chr3 24133552 24133778 -193903380 + AluJo SINE Alu 89 302 -10 261 264 100 0 chr3 24133837 24133947 -193903211 + MIR SINE MIR 84 204 -58 787 211 88 44 chr3 24133980 24134207 -193902951 - L1ME3A LINE L1 -6 6164 5928 1899 141 23 33 chr3 24135021 24135325 -193901833 + AluSx SINE Alu 1 301 -11 1653 151 70 4 chr3 24135412 24135671 -193901487 + AluSx SINE Alu 2 277 -35 351 0 0 0 chr3 24135672 24135711 -193901447 + (TC)n Simple_repeat Simple_repeat 2 40 0 * 396 0 0 0 chr3 24135710 24135754 -193901404 + (TA)n Simple_repeat Simple_repeat 1 44 0 25 51 0 0 chr3 24136199 24136238 -193900920 + AT_rich Low_complexity Low_complexity 1 39 0 244 293 0 13 chr3 24136273 24136348 -193900810 + (CATATA)n Simple_repeat Simple_repeat 6 79 0 240 294 34 34 chr3 24136429 24136548 -193900610 + MIR SINE MIR 96 214 -48 1070 148 6 28 chr3 24137500 24137676 -193899482 + FAM SINE Alu 4 175 0 2084 125 0 26 chr3 24137690 24138001 -193899157 + AluSq SINE Alu 1 303 -10 3713 113 30 0 chr3 24138143 24138681 -193898477 + MER41A LTR ERV1 1 554 0 714 200 56 25 chr3 24139066 24139226 -193897932 + AluJo SINE Alu 2 166 -146 2098 212 70 60 chr3 24139226 24139575 -193897583 + LTR8 LTR ERV1 1 362 -329 2275 118 0 6 chr3 24139575 24139889 -193897269 - AluSx SINE Alu 0 312 1 2098 212 70 60 chr3 24139889 24140208 -193896950 + LTR8 LTR ERV1 362 676 -15 249 205 0 0 chr3 24140237 24140273 -193896885 + LTR8 LTR ERV1 646 681 -10 3012 146 26 10 chr3 24140273 24140768 -193896390 - MER41B LTR ERV1 0 635 133 261 83 0 0 chr3 24140768 24140804 -193896354 + (T)n Simple_repeat Simple_repeat 1 36 0 1524 171 0 19 chr3 24140867 24141002 -193896156 + AluJb SINE Alu 1 130 -182 2629 65 0 0 chr3 24141002 24141310 -193895848 + AluY SINE Alu 1 308 -3 1524 171 0 19 chr3 24141310 24141432 -193895726 + AluJb SINE Alu 130 253 -59 316 246 52 78 chr3 24141438 24141670 -193895488 + L1ME4a LINE L1 5893 6118 -3 1032 191 72 139 chr3 24141841 24142547 -193894611 - LTR49 LTR ERV1 0 595 1 269 305 33 26 chr3 24142553 24142704 -193894454 - HAL1 LINE L1 -1082 1425 1274 333 0 0 0 chr3 24142759 24142796 -193894362 + (CA)n Simple_repeat Simple_repeat 2 38 0 335 206 0 15 chr3 24142816 24142884 -193894274 - AluJb SINE Alu -1 301 235 3974 105 26 51 chr3 24142884 24143530 -193893628 - MER41B LTR ERV1 0 635 6 1492 176 0 8 chr3 24143530 24143775 -193893383 - AluJb SINE Alu -69 243 1 3670 150 25 27 chr3 24143787 24143847 -193893311 - LTR8A LTR ERV1 0 727 668 2255 115 0 0 chr3 24143847 24144143 -193893015 + AluSx SINE Alu 1 296 -16 3670 150 25 27 chr3 24144143 24144726 -193892432 - LTR8A LTR ERV1 -59 668 60 44235 45 5 1 chr3 24144726 24150833 -193886325 + L1PA4 LINE L1 20 6151 -4 290 226 0 0 chr3 24150938 24150991 -193886167 - LTR8A LTR ERV1 -635 92 40 897 249 59 135 chr3 24150997 24151856 -193885302 + LTR1B LTR ERV1 33 826 0 244 77 103 0 chr3 24151856 24151892 -193885266 - LTR8A LTR ERV1 -687 40 1 2195 122 0 0 chr3 24151904 24152191 -193884967 - AluSx SINE Alu -21 291 5 232 204 0 0 chr3 24152309 24152353 -193884805 - Alu SINE Alu -3 298 255 641 149 26 26 chr3 24152377 24152491 -193884667 + FRAM SINE Alu 54 167 -9 2419 74 7 13 chr3 24152493 24152803 -193884355 + AluSp SINE Alu 1 308 -5 633 234 42 24 chr3 24152912 24153079 -193884079 + LTR29 LTR ERV1 137 306 -316 479 160 66 28 chr3 24153079 24153185 -193883973 + FLAM_C SINE Alu 33 142 -1 1850 155 14 17 chr3 24153185 24153374 -193883784 + AluJo SINE Alu 1 190 -122 4747 98 4 51 chr3 24153374 24153931 -193883227 + LTR8 LTR ERV1 1 519 -172 2208 106 0 0 chr3 24153931 24154252 -193882906 + AluSq SINE Alu 1 321 0 4747 98 4 51 chr3 24154252 24154418 -193882740 + LTR8 LTR ERV1 519 691 0 1850 155 14 17 chr3 24154418 24154525 -193882633 + AluJo SINE Alu 190 296 -16 1151 213 44 24 chr3 24154530 24154826 -193882332 + LTR48B LTR ERV1 342 643 -1 1732 95 50 0 chr3 24154826 24155064 -193882094 + MER41B LTR ERV1 1 250 -385 3753 162 63 38 chr3 24155064 24155246 -193881912 + MER50 LTR ERV1 1 177 -557 2103 124 7 20 chr3 24155246 24155552 -193881606 + AluSq SINE Alu 3 304 -9 3753 162 63 38 chr3 24155552 24156062 -193881096 + MER50 LTR ERV1 177 711 -23 2398 143 16 3 chr3 24156063 24156447 -193880711 + MER41B LTR ERV1 247 635 0 799 136 7 43 chr3 24156479 24156619 -193880539 - LTR23 LTR ERV1 -5 432 298 433 151 0 23 chr3 24156620 24156706 -193880452 - FLAM_A SINE Alu -1 141 58 2259 120 0 0 chr3 24156717 24157026 -193880132 - AluSx SINE Alu -3 309 1 661 76 227 8 chr3 24157027 24157146 -193880012 - LTR23 LTR ERV1 -132 305 161 700 169 25 81 chr3 24157219 24157379 -193879779 - LTR23 LTR ERV1 -286 151 1 574 179 0 52 chr3 24157468 24157602 -193879556 + MER106B DNA MER1_type 8 134 -925 1718 152 8 0 chr3 24157622 24157879 -193879279 - AluJo SINE Alu -49 263 5 1572 225 160 43 chr3 24157904 24158623 -193878535 - HAL1 LINE L1 -1559 948 146 723 96 70 45 chr3 24158637 24158793 -193878365 - L1MA7 LINE L1 -4 6287 6128 853 126 0 70 chr3 24158794 24158937 -193878221 + AluJo SINE Alu 1 133 -169 538 175 10 0 chr3 24158999 24159102 -193878056 - LTR49 LTR ERV1 0 595 492 1838 139 14 3 chr3 24159253 24159541 -193877617 - L1MA7 LINE L1 -186 6105 5815 312 276 46 11 chr3 24159571 24159658 -193877500 - HAL1 LINE L1 -2400 107 18 1749 164 31 0 chr3 24159658 24159951 -193877207 - AluJb SINE Alu -10 302 1 883 193 6 12 chr3 24160128 24160294 -193876864 + AluJo SINE Alu 137 301 -1 346 276 25 31 chr3 24160406 24160569 -193876589 + L1ME4a LINE L1 5584 5745 -376 424 214 165 71 chr3 24160570 24160591 -193876567 + MER58A DNA MER1_type 1 19 -2401 2532 200 26 24 chr3 24160591 24161131 -193876027 + MER87 LTR ERV1 1 541 0 424 214 165 71 chr3 24161131 24161291 -193875867 + MER58A DNA MER1_type 19 199 -25 927 89 0 22 chr3 24161308 24161443 -193875715 - FLAM_C SINE Alu 0 133 2 415 309 83 20 chr3 24161475 24161679 -193875479 + L1ME4a LINE L1 5737 5953 -168 2046 107 13 10 chr3 24161706 24162006 -193875152 - AluSx SINE Alu -11 301 1 1419 183 67 14 chr3 24162024 24162231 -193874927 - AluJo SINE Alu -12 300 72 1989 120 51 0 chr3 24162231 24162523 -193874635 + AluSx SINE Alu 1 307 -5 1419 183 67 14 chr3 24162523 24162600 -193874558 - AluJo SINE Alu -240 72 1 268 306 59 12 chr3 24163036 24163121 -193874037 - MER91A DNA MER1_type -2 194 106 334 325 42 8 chr3 24163150 24163270 -193873888 - MER91A DNA MER1_type -72 124 1 449 188 124 16 chr3 24163871 24164030 -193873128 + MER41B LTR ERV1 97 340 -295 933 206 47 12 chr3 24165167 24165424 -193871734 + L1ME1 LINE L1 5846 6111 -55 2211 118 7 0 chr3 24165475 24165772 -193871386 + AluSx SINE Alu 1 299 -13 329 91 0 0 chr3 24165773 24165817 -193871341 + Alu SINE Alu 1 44 -256 1217 194 18 122 chr3 24165939 24166268 -193870890 - AluJb SINE Alu -7 295 1 24 0 0 0 chr3 24166273 24166297 -193870861 + AT_rich Low_complexity Low_complexity 1 24 0 1009 118 7 0 chr3 24166300 24166436 -193870722 + AluSq/x SINE Alu 1 137 -176 2026 123 30 7 chr3 24166437 24166739 -193870419 + AluSx SINE Alu 4 312 0 1797 137 23 42 chr3 24166825 24167131 -193870027 + AluJb SINE Alu 1 300 -12 1745 156 25 0 chr3 24167390 24167672 -193869486 - AluSx SINE Alu -23 289 1 1028 171 0 12 chr3 24168002 24168172 -193868986 + FRAM SINE Alu 1 160 -16 189 0 0 0 chr3 24168883 24168904 -193868254 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2264 76 0 0 chr3 24169096 24169399 -193867759 - L1P LINE L1 -5843 303 1 248 250 0 0 chr3 24169798 24169850 -193867308 - L2 LINE L2 0 3272 3221 568 287 97 43 chr3 24170476 24170891 -193866267 + L1M4 LINE L1 3928 4319 -1827 1861 154 3 3 chr3 24170891 24171176 -193865982 + AluSx SINE Alu 24 308 -4 568 287 97 43 chr3 24171176 24171651 -193865507 + L1M4 LINE L1 4319 4866 -1280 1184 76 0 0 chr3 24171663 24171808 -193865350 + AluSq SINE Alu 30 174 -139 22 70 0 0 chr3 24172041 24172084 -193865074 + AT_rich Low_complexity Low_complexity 1 43 0 483 329 111 8 chr3 24172120 24172354 -193864804 - MIR SINE MIR 0 262 5 2059 180 43 35 chr3 24172355 24172815 -193864343 + MLT2C2 LTR ERVL 1 464 0 247 344 38 32 chr3 24172842 24172999 -193864159 - MIR SINE MIR -57 205 48 1491 128 0 0 chr3 24173133 24173337 -193863821 + AluSq SINE Alu 1 204 -109 9403 50 1 1 chr3 24174883 24176133 -193861025 + L1P LINE L1 1715 2964 -3182 1091 46 0 0 chr3 24176234 24176365 -193860793 + AluSc SINE Alu 142 272 -37 450 304 88 44 chr3 24176782 24176962 -193860196 - MARNA DNA Mariner -119 467 296 2224 99 3 0 chr3 24176962 24177277 -193859881 + AluSp SINE Alu 1 313 0 450 304 88 44 chr3 24177277 24177481 -193859677 - MARNA DNA Mariner -290 296 66 535 282 67 5 chr3 24178462 24178657 -193858501 - MIR SINE MIR -4 258 52 276 197 118 0 chr3 24178829 24178905 -193858253 + L1ME3 LINE L1 5890 5974 -188 2064 142 19 30 chr3 24178928 24179295 -193857863 + MLT1A1 LTR MaLR 1 363 -2 485 180 9 9 chr3 24179296 24179407 -193857751 + MLT1A1-int LTR MaLR 3 113 -1622 26 0 0 0 chr3 24179418 24179444 -193857714 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr3 24179711 24179737 -193857421 + AT_rich Low_complexity Low_complexity 1 26 0 230 333 107 20 chr3 24180550 24180700 -193856458 - MIR SINE MIR -70 192 30 22 0 0 0 chr3 24180752 24180774 -193856384 + AT_rich Low_complexity Low_complexity 1 22 0 2071 135 10 6 chr3 24181319 24181630 -193855528 + AluSx SINE Alu 1 312 0 6654 45 6 0 chr3 24181695 24182540 -193854618 - L1PA5 LINE L1 -2 6152 5303 792 229 0 6 chr3 24185634 24185791 -193851367 - FRAM SINE Alu -13 163 8 1215 173 17 4 chr3 24187025 24187256 -193849902 + L1MB8 LINE L1 5789 6022 -156 2229 99 0 32 chr3 24187282 24187595 -193849563 - AluSx SINE Alu -9 303 1 604 174 97 107 chr3 24188013 24188209 -193848949 - MER20 DNA MER1_type -3 216 23 359 231 135 14 chr3 24188231 24188382 -193848776 + L1ME3 LINE L1 5660 5829 -333 390 169 34 11 chr3 24189476 24189565 -193847593 + MER103 DNA DNA 2 92 -74 212 171 0 0 chr3 24190129 24190170 -193846988 + A-rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr3 24190640 24190670 -193846488 + AT_rich Low_complexity Low_complexity 1 30 0 608 264 26 31 chr3 24191210 24191403 -193845755 + MIR SINE MIR 24 215 -47 2231 104 24 0 chr3 24191584 24191882 -193845276 - AluSx SINE Alu -5 307 3 1690 182 26 10 chr3 24191884 24192186 -193844972 - AluJo SINE Alu -5 307 1 756 247 0 0 chr3 24192418 24192564 -193844594 + FRAM SINE Alu 1 146 -30 445 215 123 8 chr3 24192603 24192733 -193844425 - MIR SINE MIR -55 207 63 207 0 0 0 chr3 24192734 24192757 -193844401 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 653 200 8 17 chr3 24192759 24192879 -193844279 - FLAM_A SINE Alu -13 120 2 180 133 0 0 chr3 24193769 24193799 -193843359 - MIR3 SINE MIR -19 189 160 23 54 0 0 chr3 24195064 24195101 -193842057 + AT_rich Low_complexity Low_complexity 1 37 0 1638 151 59 11 chr3 24195187 24195459 -193841699 - AluJo SINE Alu -27 285 1 1640 180 28 3 chr3 24195477 24195761 -193841397 - AluJb SINE Alu -16 296 6 891 199 80 74 chr3 24196109 24196461 -193840697 - L1ME2 LINE L1 -19 6145 5792 1989 146 3 3 chr3 24197346 24197647 -193839511 - AluSx SINE Alu -11 301 1 1090 261 87 34 chr3 24197718 24198214 -193838944 + MER77 LTR ERV1 54 599 -6 662 211 99 0 chr3 24198371 24198532 -193838626 + MLT1C LTR MaLR 287 463 -4 1593 165 91 0 chr3 24199113 24199398 -193837760 + AluJo SINE Alu 1 311 -1 1939 176 0 7 chr3 24200303 24200605 -193836553 + AluJb SINE Alu 5 304 -8 841 210 258 0 chr3 24200663 24200934 -193836224 - MER2 DNA MER2_type -2 342 2 12422 130 63 47 chr3 24201068 24201367 -193835791 + Tigger1 DNA MER2_type 3 296 -2122 1979 147 3 0 chr3 24201367 24201652 -193835506 + AluSx SINE Alu 4 289 -23 12422 130 63 47 chr3 24201652 24202897 -193834261 + Tigger1 DNA MER2_type 296 1519 -899 2294 83 36 0 chr3 24202897 24203199 -193833959 + AluSq SINE Alu 1 313 0 12422 130 63 47 chr3 24203199 24203903 -193833255 + Tigger1 DNA MER2_type 1519 2296 -122 1664 193 4 4 chr3 24203903 24204183 -193832975 - AluJo SINE Alu -24 288 9 12422 130 63 47 chr3 24204183 24204308 -193832850 + Tigger1 DNA MER2_type 2296 2417 -1 664 246 116 43 chr3 24204442 24204788 -193832370 - MLT1I LTR MaLR 0 409 39 181 307 117 58 chr3 24204857 24204994 -193832164 + L2 LINE L2 2910 3054 -218 1350 146 154 20 chr3 24205499 24205752 -193831406 - AluJb SINE Alu -15 287 1 964 188 167 61 chr3 24206389 24206718 -193830440 + MLT1A1 LTR MaLR 1 364 -1 1921 72 8 0 chr3 24207235 24207472 -193829686 + AluSq SINE Alu 72 310 -3 2165 109 7 7 chr3 24208479 24208782 -193828376 + AluSx SINE Alu 1 303 -9 1254 209 4 4 chr3 24209600 24209835 -193827323 - MER8 DNA MER2_type 0 239 5 1486 150 124 23 chr3 24211682 24211989 -193825169 + MER44D DNA MER2_type 1 608 -1 1697 173 25 3 chr3 24213209 24213492 -193823666 - AluJo SINE Alu -11 301 13 6628 103 51 24 chr3 24213896 24214252 -193822906 - MER11C LTR ERVK 0 1071 726 2143 21 0 0 chr3 24214252 24214487 -193822671 + 7SLRNA srpRNA srpRNA 1 235 -85 6628 103 51 24 chr3 24214487 24215173 -193821985 - MER11C LTR ERVK -345 726 1 2036 190 125 4 chr3 24215634 24216123 -193821035 + L1ME2 LINE L1 5615 6162 -2 26 0 0 0 chr3 24216286 24216312 -193820846 + AT_rich Low_complexity Low_complexity 1 26 0 2433 78 3 0 chr3 24216652 24216958 -193820200 + AluY SINE Alu 1 307 -4 288 0 0 0 chr3 24217431 24217463 -193819695 + (T)n Simple_repeat Simple_repeat 1 32 0 5082 97 23 55 chr3 24217528 24218326 -193818832 + SVA Other Other 95 866 -520 1314 111 16 115 chr3 24218337 24218824 -193818334 + SVA Other Other 430 868 -518 6303 71 26 52 chr3 24218868 24219857 -193817301 + SVA Other Other 433 1396 0 199 256 23 58 chr3 24219864 24219950 -193817208 + L3 LINE CR1 689 771 -806 465 19 0 0 chr3 24220020 24220074 -193817084 + (CA)n Simple_repeat Simple_repeat 2 55 0 208 288 17 0 chr3 24220228 24220287 -193816871 + L3 LINE CR1 1158 1217 -360 563 231 77 0 chr3 24220287 24220430 -193816728 + MER105 DNA DNA 1 154 -50 1942 137 13 22 chr3 24220778 24221091 -193816067 - AluSq SINE Alu -3 310 1 14858 176 24 6 chr3 24221092 24224875 -193812283 - L1P5 LINE L1 -367 6500 2598 2048 116 20 3 chr3 24274965 24275259 -193761899 + AluSx SINE Alu 1 299 -13 24 32 0 0 chr3 24275736 24275767 -193761391 + AT_rich Low_complexity Low_complexity 1 31 0 394 298 32 8 chr3 24276406 24276530 -193760628 + L2 LINE L2 2504 2630 -684 2178 103 17 7 chr3 24276586 24276888 -193760270 + AluSc SINE Alu 4 308 -1 479 278 86 5 chr3 24276905 24277092 -193760066 + L2 LINE L2 3060 3261 -52 24 53 0 0 chr3 24277366 24277404 -193759754 + AT_rich Low_complexity Low_complexity 1 38 0 879 186 77 41 chr3 24277507 24277728 -193759430 + AluJo SINE Alu 83 311 -1 503 230 165 99 chr3 24278396 24278603 -193758555 + MLT1J LTR MaLR 1 193 -318 1868 92 0 88 chr3 24278603 24278909 -193758249 + AluY SINE Alu 1 279 -32 247 24 24 24 chr3 24278911 24278952 -193758206 + (CAAAA)n Simple_repeat Simple_repeat 1 41 0 503 230 165 99 chr3 24278952 24279154 -193758004 + MLT1J LTR MaLR 193 440 -71 1441 145 16 36 chr3 24279425 24279674 -193757484 + AluJo SINE Alu 38 281 -31 200 213 33 49 chr3 24281235 24281296 -193755862 - MER5A DNA MER1_type -129 60 1 228 67 0 0 chr3 24281423 24281453 -193755705 + (TA)n Simple_repeat Simple_repeat 2 31 0 1441 202 84 81 chr3 24282019 24282037 -193755121 + L1M4 LINE L1 2669 2685 -3461 2304 165 7 30 chr3 24282037 24282151 -193755007 - MSTB LTR MaLR 0 426 311 2279 87 0 0 chr3 24282151 24282449 -193754709 + AluSx SINE Alu 1 298 -14 2304 165 7 30 chr3 24282449 24282770 -193754388 - MSTB LTR MaLR -115 311 1 1441 202 84 81 chr3 24282770 24283346 -193753812 + L1M4 LINE L1 2685 3265 -2881 915 238 92 27 chr3 24283399 24283693 -193753465 + L1M4 LINE L1 3638 3950 -2196 24 0 0 0 chr3 24283693 24283717 -193753441 + AT_rich Low_complexity Low_complexity 1 24 0 1178 102 0 0 chr3 24283719 24283876 -193753282 - AluSg/x SINE Alu -21 289 133 3822 229 96 26 chr3 24283889 24284366 -193752792 + L1M4 LINE L1 3952 4394 -1752 2001 134 28 0 chr3 24284366 24284657 -193752501 + AluSx SINE Alu 1 299 -13 3822 229 96 26 chr3 24284657 24285465 -193751693 + L1M4 LINE L1 4394 5328 -818 584 293 57 47 chr3 24285468 24285892 -193751266 + L1ME3A LINE L1 4909 5336 -810 2182 107 0 0 chr3 24285909 24286200 -193750958 - AluSx SINE Alu -21 291 1 3811 209 35 22 chr3 24286333 24287162 -193749996 - MER21B LTR ERV1 -20 843 4 526 270 194 12 chr3 24287197 24287449 -193749709 + L1ME3A LINE L1 5503 5800 -370 259 226 108 0 chr3 24287465 24287558 -193749600 + L1ME3A LINE L1 5860 5962 -208 323 200 208 54 chr3 24287676 24287806 -193749352 + L1ME3A LINE L1 6020 6169 -1 2228 110 10 0 chr3 24288017 24288325 -193748833 + AluY SINE Alu 1 311 0 486 0 0 0 chr3 24288873 24288927 -193748231 + (CA)n Simple_repeat Simple_repeat 2 55 0 1291 243 56 63 chr3 24289301 24289746 -193747412 - MLT1E3 LTR MaLR -43 581 140 1748 126 78 28 chr3 24289788 24290145 -193747013 + THE1C LTR MaLR 1 375 0 313 209 12 47 chr3 24290632 24290718 -193746440 + MIR3 SINE MIR 116 198 -10 6084 166 23 8 chr3 24290960 24292134 -193745024 + L1 LINE L1 3998 5188 -958 416 186 98 0 chr3 24292141 24292243 -193744915 + L1 LINE L1 5224 5335 -811 907 193 128 0 chr3 24292243 24292430 -193744728 + MLT2B3 LTR ERVL 1 211 -343 715 119 30 22 chr3 24292431 24292565 -193744593 + L1MA7 LINE L1 6155 6289 -2 411 278 83 19 chr3 24292815 24293002 -193744156 + L1ME1 LINE L1 496 699 -5908 644 188 124 60 chr3 24293002 24293220 -193743938 - MER106A DNA MER1_type 0 236 5 411 278 83 19 chr3 24293220 24293237 -193743921 + L1ME1 LINE L1 699 713 -5894 386 211 22 22 chr3 24293242 24293332 -193743826 + L1ME1 LINE L1 746 835 -5772 246 200 146 0 chr3 24293346 24293456 -193743702 + L1ME1 LINE L1 4642 4767 -1659 1834 217 30 30 chr3 24293526 24293986 -193743172 + MER101 LTR ERV1 11 470 -4 2029 213 122 21 chr3 24293988 24294780 -193742378 + L1ME1 LINE L1 5289 6163 -283 * 3769 158 216 12 chr3 24294771 24295840 -193741318 + L1MC1 LINE L1 1284 2569 -3857 1453 118 0 108 chr3 24295821 24296108 -193741050 + L1M4c LINE L1 6 261 -6123 * 5957 156 48 9 chr3 24296126 24297392 -193739766 + L1MC1 LINE L1 5296 6613 0 428 235 84 8 chr3 24297390 24297509 -193739649 + L1ME1 LINE L1 6156 6283 -163 * 690 221 13 0 chr3 24297517 24297675 -193739483 + L1MA10 LINE L1 6175 6334 0 26 64 0 0 chr3 24297938 24297985 -193739173 + AT_rich Low_complexity Low_complexity 1 47 0 344 317 84 0 chr3 24298058 24298225 -193738933 + L1MC4a LINE L1 5733 5913 -1895 22 70 0 0 chr3 24299622 24299665 -193737493 + AT_rich Low_complexity Low_complexity 1 43 0 212 330 51 91 chr3 24299870 24300067 -193737091 - MIR3 SINE MIR -16 192 4 359 248 84 84 chr3 24300188 24300462 -193736696 + MLT1L LTR MaLR 12 285 -330 240 35 0 0 chr3 24300462 24300491 -193736667 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 27 29 0 0 chr3 24300795 24300829 -193736329 + AT_rich Low_complexity Low_complexity 1 34 0 10708 137 43 14 chr3 24300834 24303876 -193733282 + L1MA1 LINE L1 3177 6294 -8 2143 87 0 14 chr3 24304807 24305093 -193732065 + AluSx SINE Alu 1 282 -30 210 37 0 0 chr3 24305096 24305123 -193732035 + (CATA)n Simple_repeat Simple_repeat 2 28 0 24 0 0 0 chr3 24305181 24305205 -193731953 + AT_rich Low_complexity Low_complexity 1 24 0 437 231 132 19 chr3 24305830 24306042 -193731116 + L1MC4 LINE L1 7807 8042 0 183 278 270 9 chr3 24309957 24310072 -193727086 - MIR SINE MIR -44 218 74 24 0 0 0 chr3 24310494 24310518 -193726640 + AT_rich Low_complexity Low_complexity 1 24 0 187 261 0 22 chr3 24310805 24310851 -193726307 + L2 LINE L2 3181 3225 -88 476 289 85 25 chr3 24311089 24311290 -193725868 + MIR SINE MIR 4 216 -46 * 506 258 46 62 chr3 24311271 24311465 -193725693 + MIR SINE MIR 6 196 -66 199 231 135 0 chr3 24311930 24311982 -193725176 - L2 LINE L2 -76 3237 3179 1064 257 123 20 chr3 24313095 24313492 -193723666 + MLT1J LTR MaLR 72 509 -2 220 308 96 0 chr3 24313843 24313947 -193723211 - L2 LINE L2 -3 3310 3197 872 343 70 24 chr3 24314012 24314360 -193722798 - L2 LINE L2 -409 2905 2530 2324 97 3 0 chr3 24314360 24314659 -193722499 + AluSg SINE Alu 1 300 -10 872 343 70 24 chr3 24314659 24314765 -193722393 - L2 LINE L2 -784 2530 2430 249 128 0 0 chr3 24317496 24317535 -193719623 - tRNA-Gly-GGA tRNA tRNA -36 39 1 2341 98 0 0 chr3 24317550 24317845 -193719313 - AluSx SINE Alu -17 295 1 609 337 81 10 chr3 24317970 24318376 -193718782 - MLT1L LTR MaLR -49 566 132 429 306 159 9 chr3 24318664 24318896 -193718262 + L3 LINE CR1 1116 1382 -195 368 328 87 6 chr3 24318988 24319171 -193717987 - MIR SINE MIR -45 217 20 262 309 74 54 chr3 24320437 24320586 -193716572 + MLT1K LTR MaLR 157 308 -280 416 184 26 0 chr3 24320695 24320771 -193716387 + MLT1K LTR MaLR 509 586 -2 227 347 0 10 chr3 24320908 24321006 -193716152 + L2 LINE L2 2890 2986 -286 263 419 7 13 chr3 24321101 24321256 -193715902 - L2 LINE L2 -567 2747 2594 382 277 96 50 chr3 24321261 24321637 -193715521 + L1ME4a LINE L1 5536 5928 -193 180 321 62 25 chr3 24321793 24321874 -193715284 - MIR SINE MIR -66 142 59 1118 134 0 6 chr3 24322482 24322646 -193714512 - AluSg/x SINE Alu -16 294 132 22 70 0 0 chr3 24323391 24323434 -193713724 + AT_rich Low_complexity Low_complexity 1 43 0 1872 132 7 14 chr3 24323437 24323726 -193713432 + AluJb SINE Alu 13 299 -13 222 91 0 0 chr3 24324966 24324999 -193712159 + (CA)n Simple_repeat Simple_repeat 2 34 0 31 58 0 0 chr3 24325205 24325257 -193711901 + AT_rich Low_complexity Low_complexity 1 52 0 26 64 0 0 chr3 24325415 24325462 -193711696 + AT_rich Low_complexity Low_complexity 1 47 0 1618 188 35 3 chr3 24325649 24325936 -193711222 - AluJo SINE Alu -11 301 6 212 316 153 0 chr3 24326621 24326719 -193710439 - L2 LINE L2 -4 3309 3197 819 153 8 0 chr3 24327264 24327388 -193709770 + FLAM_C SINE Alu 8 132 -11 241 163 82 0 chr3 24327654 24327703 -193709455 - MER116 DNA Mariner -27 53 1 29 0 0 0 chr3 24328001 24328030 -193709128 + AT_rich Low_complexity Low_complexity 1 29 0 1129 249 79 14 chr3 24328045 24328462 -193708696 + L1M4 LINE L1 4060 4503 -1643 1235 190 75 51 chr3 24328469 24328581 -193708577 - MER44D DNA MER2_type -1882 609 501 1613 137 149 3 chr3 24328581 24328896 -193708262 + MER46B DNA MER2_type 1 236 0 1235 190 75 51 chr3 24328896 24329114 -193708044 - MER44D DNA MER2_type -1990 501 1 1395 236 55 14 chr3 24329114 24329339 -193707819 + L1M4 LINE L1 4514 4728 -1418 1837 188 0 0 chr3 24329339 24329637 -193707521 + AluJb SINE Alu 1 298 -14 1395 236 55 14 chr3 24329637 24329826 -193707332 + L1M4 LINE L1 4728 4945 -1201 276 219 98 24 chr3 24330153 24330235 -193706923 + MER5A DNA MER1_type 99 186 -3 247 259 0 0 chr3 24330536 24330590 -193706568 + (TATG)n Simple_repeat Simple_repeat 2 55 0 535 264 98 15 chr3 24330670 24330935 -193706223 + L1MC5 LINE L1 7290 7576 -385 21 71 0 0 chr3 24331081 24331123 -193706035 + AT_rich Low_complexity Low_complexity 1 42 0 1125 202 0 18 chr3 24331323 24331546 -193705612 - MER20 DNA MER1_type 0 219 1 2990 244 74 54 chr3 24331869 24333408 -193703750 + L1ME LINE L1 17 1524 -5120 1896 133 73 3 chr3 24333408 24333723 -193703435 - MER1B DNA MER1_type 0 337 1 2990 244 74 54 chr3 24333723 24334512 -193702646 + L1ME LINE L1 1524 2296 -4348 1620 167 49 3 chr3 24334512 24334799 -193702359 - AluJb SINE Alu -12 300 1 2990 244 74 54 chr3 24334799 24334978 -193702180 + L1ME LINE L1 2296 4924 -1720 228 303 0 40 chr3 24335465 24335564 -193701594 + MLT2E LTR ERVL 40 134 -494 311 268 162 35 chr3 24335823 24336051 -193701107 + L1ME LINE L1 5462 5718 -926 569 286 94 28 chr3 24336139 24336565 -193700593 + L1ME LINE L1 5836 6289 -379 452 189 0 0 chr3 24336586 24336676 -193700482 - L1PB4 LINE L1 -2 6154 6065 265 327 26 39 chr3 24337050 24337206 -193699952 - L2 LINE L2 -606 2708 2555 2763 123 41 16 chr3 24337311 24337797 -193699361 + L1MA8 LINE L1 5340 5837 -454 575 157 75 37 chr3 24337816 24337950 -193699208 - L1M3 LINE L1 -1141 5005 4867 * 1593 176 84 4 chr3 24337949 24338398 -193698760 + L1M3 LINE L1 5007 5480 -703 363 149 90 15 chr3 24338663 24338730 -193698428 + AluS SINE Alu 1 72 -227 551 45 0 0 chr3 24338893 24338959 -193698199 - AluSq/x SINE Alu -181 131 66 3825 200 170 31 chr3 24339376 24340638 -193696520 - Charlie1 DNA MER1_type -2 2759 7 1882 173 3 38 chr3 24340651 24340997 -193696161 + MER1B DNA MER1_type 4 337 0 2554 210 29 15 chr3 24341017 24341541 -193695617 + MER77 LTR ERV1 54 584 -21 962 161 5 57 chr3 24341759 24341951 -193695207 - MER20 DNA MER1_type -37 182 1 296 306 0 31 chr3 24342261 24342359 -193694799 + MER5B DNA MER1_type 2 96 -82 602 278 91 20 chr3 24342362 24342560 -193694598 - L2 LINE L2 -2 3311 3100 3042 168 71 13 chr3 24342825 24343427 -193693731 - L1PB4 LINE L1 -13 6143 5507 2972 88 8 5 chr3 24343427 24343826 -193693332 + MLT2A1 LTR ERVL 1 400 -44 238 113 56 28 chr3 24343827 24343898 -193693260 + (TA)n Simple_repeat Simple_repeat 1 73 0 329 20 122 0 chr3 24343909 24343958 -193693200 + MLT2A1 LTR ERVL 399 453 0 2705 164 93 17 chr3 24343958 24344036 -193693122 - L1PB4 LINE L1 -645 5511 5440 906 64 112 0 chr3 24344036 24344161 -193692997 + MER85 DNA T2_type 1 139 0 2705 164 93 17 chr3 24344161 24344838 -193692320 - L1PB4 LINE L1 -716 5440 4710 1719 154 0 0 chr3 24345257 24345516 -193691642 + AluSx SINE Alu 49 307 -5 316 224 116 99 chr3 24346161 24346393 -193690765 + L1MEc LINE L1 1708 1943 -4453 347 274 80 33 chr3 24346414 24346626 -193690532 + L1MEc LINE L1 1731 1952 -4444 4236 238 55 27 chr3 24346704 24347138 -193690020 + L1MEc LINE L1 2079 2499 -3716 2125 72 0 75 chr3 24347138 24347459 -193689699 + AluY SINE Alu 1 297 -14 4236 238 55 27 chr3 24347459 24348662 -193688496 + L1MEc LINE L1 2499 3761 -2454 2192 197 53 31 chr3 24348725 24348799 -193688359 + L1MB7 LINE L1 5575 5646 -538 2267 84 0 32 chr3 24348799 24349107 -193688051 + AluSq SINE Alu 1 298 -15 2192 197 53 31 chr3 24349107 24349620 -193687538 + L1MB7 LINE L1 5646 6175 -9 219 327 50 30 chr3 24349677 24349778 -193687380 + L3b LINE CR1 1286 1388 -195 8571 132 16 54 chr3 24349905 24351202 -193685956 + L1MA2 LINE L1 3656 4838 -1467 2217 101 10 3 chr3 24351202 24351500 -193685658 + AluSx SINE Alu 1 300 -12 8571 132 16 54 chr3 24351500 24352331 -193684827 + L1MA2 LINE L1 4838 5699 -606 217 200 42 33 chr3 24352347 24352467 -193684691 + (TTATA)n Simple_repeat Simple_repeat 5 125 0 3218 107 50 53 chr3 24352482 24353080 -193684078 + L1MA2 LINE L1 5709 6304 0 2530 152 31 0 chr3 24353332 24353747 -193683411 - MSTA LTR MaLR 0 428 1 21 0 0 0 chr3 24354107 24354128 -193683030 + AT_rich Low_complexity Low_complexity 1 21 0 2075 125 149 8 chr3 24355165 24355540 -193681618 - MSTA LTR MaLR 0 428 1 1600 173 184 11 chr3 24356002 24356366 -193680792 - MSTA LTR MaLR -1 427 1 2909 122 11 13 chr3 24356366 24356816 -193680342 - MSTA-int LTR MaLR 0 1580 1132 1039 263 86 41 chr3 24356960 24357379 -193679779 - MLT1J1 LTR MaLR -8 438 1 350 233 69 43 chr3 24357379 24357495 -193679663 - MER5A DNA MER1_type -40 149 31 269 281 74 66 chr3 24357389 24357510 -193679648 + MER5A DNA MER1_type 63 184 -5 * 525 322 163 36 chr3 24357803 24358381 -193678777 + L2 LINE L2 2262 2912 -402 250 371 16 8 chr3 24358484 24358608 -193678550 - L2 LINE L2 -999 2315 2191 1792 162 7 10 chr3 24358736 24359032 -193678126 + AluJo SINE Alu 1 295 -17 2437 196 143 4 chr3 24359050 24359742 -193677416 + L1MB8 LINE L1 3959 4746 -1400 844 292 27 95 chr3 24359742 24360300 -193676858 + MER34 LTR ERV1 1 520 -22 1424 172 7 24 chr3 24360330 24360548 -193676610 + L1MB8 LINE L1 4742 4962 -1184 189 0 0 0 chr3 24360548 24360569 -193676589 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 357 24 0 0 chr3 24360568 24360610 -193676548 + (GA)n Simple_repeat Simple_repeat 2 43 0 1424 172 7 24 chr3 24360569 24360681 -193676477 + L1MB8 LINE L1 4962 5026 -1120 748 225 146 36 chr3 24360690 24360943 -193676215 - MLT1C LTR MaLR 0 467 187 2481 157 86 48 chr3 24360955 24361478 -193675680 + MER21B LTR ERV1 320 862 -1 616 173 83 18 chr3 24361493 24361596 -193675562 + L1MB8 LINE L1 5338 5433 -745 1575 181 0 38 chr3 24361596 24361935 -193675223 + AluJb SINE Alu 3 330 0 616 173 83 18 chr3 24361935 24362563 -193674595 + L1MB8 LINE L1 5433 6176 -2 2598 68 0 0 chr3 24362896 24363203 -193673955 + AluY SINE Alu 2 308 -3 2573 63 0 0 chr3 24363809 24364112 -193673046 - AluY SINE Alu -8 303 1 2355 101 0 0 chr3 24365113 24365420 -193671738 + AluSc SINE Alu 2 308 -1 192 40 0 0 chr3 24365680 24365705 -193671453 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1861 152 69 6 chr3 24365964 24366299 -193670859 + L1MB7 LINE L1 5829 6184 0 273 286 38 60 chr3 24366469 24366602 -193670556 + Charlie8 DNA MER1_type 94 223 -2194 2305 100 0 0 chr3 24367629 24367928 -193669230 - AluSx SINE Alu -13 299 1 890 192 126 0 chr3 24368394 24368576 -193668582 + MER3 DNA MER1_type 5 209 0 270 284 9 9 chr3 24369741 24369850 -193667308 + (CCG)n Simple_repeat Simple_repeat 2 110 0 284 62 0 21 chr3 24369905 24369953 -193667205 + (CCG)n Simple_repeat Simple_repeat 1 47 0 314 324 111 56 chr3 24369976 24370282 -193666876 + L1M2 LINE L1 462 784 -6065 * 382 308 165 56 chr3 24370261 24370709 -193666449 - L1M2 LINE L1 -5596 1253 757 186 43 0 0 chr3 24371376 24371399 -193665759 + (A)n Simple_repeat Simple_repeat 1 23 0 220 235 39 0 chr3 24372253 24372304 -193664854 + MIR SINE MIR 88 140 -122 8680 115 21 28 chr3 24372425 24373671 -193663487 - HSMAR2 DNA Mariner -2 1300 62 1754 182 27 0 chr3 24373671 24373967 -193663191 + AluSx SINE Alu 1 304 -8 8680 115 21 28 chr3 24373967 24374029 -193663129 - HSMAR2 DNA Mariner -1240 62 1 2309 121 0 0 chr3 24374075 24374381 -193662777 + AluSx SINE Alu 1 306 -6 296 253 92 0 chr3 24374941 24375028 -193662130 - MIR SINE MIR -110 152 58 1623 213 7 7 chr3 24375155 24375465 -193661693 + AluJo SINE Alu 1 310 -2 574 302 80 18 chr3 24375471 24375913 -193661245 + L1MEd LINE L1 1072 1627 -863 21 36 0 0 chr3 24376247 24376275 -193660883 + AT_rich Low_complexity Low_complexity 1 28 0 479 319 21 14 chr3 24376507 24376651 -193660507 - LTR67 LTR ERVL -377 180 36 309 330 91 43 chr3 24376872 24377266 -193659892 + L1MEd LINE L1 2104 2516 -3613 1602 143 22 0 chr3 24377272 24377502 -193659656 + AluSx SINE Alu 1 235 -77 26 30 0 0 chr3 24378157 24378190 -193658968 + AT_rich Low_complexity Low_complexity 1 33 0 836 185 205 21 chr3 24378197 24378557 -193658601 + L1MEc LINE L1 2176 2560 -3655 4636 176 46 39 chr3 24378583 24380027 -193657131 + L1MA9 LINE L1 4374 5825 -487 2007 131 6 19 chr3 24380027 24380340 -193656818 + AluSg SINE Alu 1 309 -1 4636 176 46 39 chr3 24380340 24380794 -193656364 + L1MA9 LINE L1 5825 6274 -38 2419 214 119 13 chr3 24380781 24381496 -193655662 + L1MEc LINE L1 2582 3372 -2843 * 3150 290 112 31 chr3 24381538 24382046 -193655112 - L2 LINE L2 -1217 2097 1631 1954 210 174 2 chr3 24382046 24382489 -193654669 - LTR40a LTR ERVL 0 519 1 3150 290 112 31 chr3 24382489 24383420 -193653738 - L2 LINE L2 -1683 1631 542 23 0 0 0 chr3 24383429 24383452 -193653706 + AT_rich Low_complexity Low_complexity 1 23 0 560 296 66 36 chr3 24383566 24383762 -193653396 + MIR3 SINE MIR 4 205 -3 257 322 15 68 chr3 24384380 24384585 -193652573 - L2 LINE L2 -24 3289 3096 223 319 32 32 chr3 24384595 24384689 -193652469 + L2 LINE L2 3173 3266 -47 278 341 182 11 chr3 24384708 24384884 -193652274 - L2 LINE L2 -245 3068 2863 211 219 0 62 chr3 24384932 24384996 -193652162 + CT-rich Low_complexity Low_complexity 4 63 0 291 353 147 0 chr3 24384996 24385186 -193651972 - L2 LINE L2 -567 2747 2530 301 125 0 0 chr3 24385207 24385255 -193651903 + AluJ/FLAM SINE Alu 37 84 -218 1021 241 106 20 chr3 24385319 24385667 -193651491 - L2 LINE L2 -807 2507 2130 317 277 151 25 chr3 24386195 24386314 -193650844 + L2 LINE L2 3180 3313 0 981 236 86 90 chr3 24386557 24387104 -193650054 + MLT1H LTR MaLR 1 545 -4 1127 292 21 3 chr3 24387177 24387506 -193649652 + L1MC4a LINE L1 5580 5914 -1894 2232 105 0 7 chr3 24387520 24387825 -193649333 - AluSc SINE Alu -6 303 1 2268 104 7 3 chr3 24387869 24388176 -193648982 + AluSx SINE Alu 1 308 -4 201 94 0 0 chr3 24388308 24388340 -193648818 + (CAG)n Simple_repeat Simple_repeat 3 34 0 245 29 29 0 chr3 24390646 24390680 -193646478 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1415 219 63 27 chr3 24390688 24391162 -193645996 + L1MC5 LINE L1 7411 7901 -60 1298 176 112 46 chr3 24391164 24391436 -193645722 + MER2 DNA MER2_type 2 300 -45 1111 91 24 18 chr3 24391436 24391601 -193645557 - L1MA5 LINE L1 0 6300 6135 1298 176 112 46 chr3 24391601 24391651 -193645507 + MER2 DNA MER2_type 300 345 0 1892 164 3 26 chr3 24392047 24392358 -193644800 - AluJo SINE Alu -8 304 1 942 228 27 0 chr3 24392751 24392935 -193644223 + MER5A DNA MER1_type 1 189 0 2000 121 17 3 chr3 24393351 24393648 -193643510 + AluSx SINE Alu 4 304 -8 325 131 82 0 chr3 24393681 24393742 -193643416 + Charlie5 DNA MER1_type 2498 2563 -49 697 125 50 0 chr3 24394140 24394260 -193642898 - L1MA3 LINE L1 0 6305 6180 180 356 0 46 chr3 24394313 24394400 -193642758 - MIR SINE MIR -171 91 9 477 338 13 6 chr3 24394593 24394750 -193642408 - MER117 DNA MER1_type 0 197 40 641 228 73 49 chr3 24395128 24395366 -193641792 - MLT1J LTR MaLR 0 511 338 1756 153 115 24 chr3 24395438 24395518 -193641640 + MLT1D LTR MaLR 1 72 -433 2060 124 78 12 chr3 24395518 24395849 -193641309 - THE1A LTR MaLR -2 353 1 1756 153 115 24 chr3 24395849 24396107 -193641051 + MLT1D LTR MaLR 72 370 -135 3187 176 0 19 chr3 24396123 24396639 -193640519 + MLT2B3 LTR ERVL 3 508 -46 387 89 0 0 chr3 24396643 24396699 -193640459 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 357 119 0 0 chr3 24396700 24396753 -193640405 + MLT2B2 LTR ERVL 410 463 -47 240 111 0 0 chr3 24396753 24396789 -193640369 + (TCTA)n Simple_repeat Simple_repeat 3 38 0 341 45 0 0 chr3 24396790 24396834 -193640324 + MLT2B2 LTR ERVL 410 453 -62 216 67 0 0 chr3 24396834 24396864 -193640294 + (TCTA)n Simple_repeat Simple_repeat 3 32 0 558 99 55 22 chr3 24396865 24396914 -193640244 + MLT2B3 LTR ERVL 460 506 -48 657 69 0 0 chr3 24396914 24397001 -193640157 + (TCCA)n Simple_repeat Simple_repeat 3 89 0 558 99 55 22 chr3 24397001 24397042 -193640116 + MLT2B3 LTR ERVL 506 553 -1 4607 196 37 17 chr3 24397043 24398383 -193638775 + MLT1A1-int LTR MaLR 1 1370 -1 2287 167 31 0 chr3 24398384 24398738 -193638420 + MLT1A1 LTR MaLR 1 365 0 529 158 21 0 chr3 24398738 24398833 -193638325 + MLT1D LTR MaLR 409 505 0 358 298 56 25 chr3 24398888 24399049 -193638109 - MLT1J LTR MaLR -343 168 3 183 330 107 0 chr3 24399062 24399165 -193637993 - MIR SINE MIR -20 242 129 326 165 13 0 chr3 24399410 24399489 -193637669 + CT-rich Low_complexity Low_complexity 2 81 0 251 91 0 23 chr3 24399491 24399535 -193637623 + (TG)n Simple_repeat Simple_repeat 2 44 0 2579 162 115 9 chr3 24399539 24400085 -193637073 + Tigger6 DNA MER2_type 986 1597 0 1260 120 27 0 chr3 24400605 24400788 -193636370 + MSTB1 LTR MaLR 1 188 -244 974 189 12 0 chr3 24400788 24400952 -193636206 + FAM SINE Alu 1 166 -19 1003 191 55 34 chr3 24400952 24401187 -193635971 + MSTB1 LTR MaLR 193 432 0 344 327 24 38 chr3 24401630 24401841 -193635317 - MLT1L LTR MaLR -407 208 1 2374 105 3 0 chr3 24401936 24402242 -193634916 + AluSc SINE Alu 1 307 -2 200 283 236 0 chr3 24403146 24403252 -193633906 + L2 LINE L2 3183 3313 0 569 238 33 0 chr3 24403419 24403541 -193633617 + MER5B DNA MER1_type 1 126 -52 2201 113 0 0 chr3 24403728 24404019 -193633139 - AluSx SINE Alu -21 291 1 182 37 37 0 chr3 24405852 24405879 -193631279 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1677 192 3 0 chr3 24405883 24406175 -193630983 - AluJo SINE Alu -19 293 1 2081 108 4 7 chr3 24406205 24406514 -193630644 + AluSg SINE Alu 3 310 0 282 182 0 76 chr3 24406693 24406759 -193630399 - MER3 DNA MER1_type -5 204 144 2222 213 34 45 chr3 24407136 24407672 -193629486 + MLT1E LTR MaLR 62 591 -2 356 262 74 90 chr3 24408190 24408434 -193628724 + LTR16A1 LTR ERVL 218 457 0 2034 132 7 0 chr3 24409181 24409482 -193627676 - AluSx SINE Alu 0 304 2 880 235 169 37 chr3 24409556 24409997 -193627161 - MLT1G1 LTR MaLR 0 595 20 1938 151 0 10 chr3 24410273 24410577 -193626581 - AluJb SINE Alu -11 301 1 1637 158 34 34 chr3 24410581 24410878 -193626280 - AluJb SINE Alu -15 297 1 866 158 25 54 chr3 24410893 24411061 -193626097 - Charlie5 DNA MER1_type -203 2421 2258 1939 91 36 39 chr3 24411061 24411369 -193625789 + AluSx SINE Alu 1 307 -5 866 158 25 54 chr3 24411369 24411403 -193625755 - Charlie5 DNA MER1_type -366 2258 2225 361 151 279 0 chr3 24411385 24411471 -193625687 - Charlie5 DNA MER1_type -2485 127 18 * 853 164 28 68 chr3 24411473 24411650 -193625508 - FRAM SINE Alu -14 162 1 1896 137 11 4 chr3 24411660 24411938 -193625220 - AluSx SINE Alu -32 280 1 207 0 0 0 chr3 24411983 24412006 -193625152 + (CA)n Simple_repeat Simple_repeat 1 23 0 250 182 0 0 chr3 24412011 24412055 -193625103 + MLT2F LTR ERVL 620 663 0 923 98 8 0 chr3 24412430 24412552 -193624606 - AluSq/x SINE Alu -189 123 1 37 53 0 13 chr3 24413629 24413665 -193623493 + AT_rich Low_complexity Low_complexity 1 36 -39 1887 154 10 16 chr3 24413665 24413971 -193623187 - AluJo SINE Alu -8 304 1 37 53 0 13 chr3 24413971 24414010 -193623148 + AT_rich Low_complexity Low_complexity 36 75 0 2105 131 0 0 chr3 24414063 24414354 -193622804 - AluSx SINE Alu -21 291 1 1667 156 34 30 chr3 24414358 24414653 -193622505 - AluJb SINE Alu -15 297 2 329 159 0 48 chr3 24414653 24414716 -193622442 - AluJo SINE Alu -159 143 84 1041 203 43 23 chr3 24414917 24415173 -193621985 - LTR16A1 LTR ERVL -19 438 178 224 158 0 88 chr3 24415638 24415695 -193621463 - L2 LINE L2 -1 3312 3261 367 206 0 14 chr3 24415698 24415771 -193621387 + MARNA DNA Mariner 395 466 -120 249 211 282 0 chr3 24416044 24416115 -193621043 - MIR SINE MIR -16 246 156 674 241 146 0 chr3 24416136 24416294 -193620864 - MER5A DNA MER1_type 0 189 9 459 229 59 8 chr3 24416971 24417089 -193620069 - MIR SINE MIR -74 188 65 695 317 70 0 chr3 24417091 24417321 -193619837 - MIR SINE MIR -10 252 7 595 261 18 45 chr3 24417965 24418187 -193618971 - LTR33 LTR ERVL -305 216 1 224 171 98 0 chr3 24418981 24419022 -193618136 + MIR SINE MIR 218 262 0 44650 42 4 0 chr3 24419176 24425308 -193611850 - L1PA4 LINE L1 0 6155 1 1890 165 3 0 chr3 24425308 24425611 -193611547 - AluSx SINE Alu -8 304 1 666 205 56 6 chr3 24425641 24425802 -193611356 + L1MC5 LINE L1 7257 7425 -536 925 213 87 42 chr3 24425805 24425886 -193611272 + MLT1B LTR MaLR 3 79 -311 2069 125 125 57 chr3 24425886 24426287 -193610871 - MSTA LTR MaLR 0 428 1 925 213 87 42 chr3 24426287 24426605 -193610553 + MLT1B LTR MaLR 79 358 -32 1542 171 16 85 chr3 24426607 24426695 -193610463 - MER2 DNA MER2_type -2 343 251 1608 140 29 59 chr3 24426695 24426829 -193610329 + AluJo SINE Alu 1 137 -175 2338 110 0 0 chr3 24426829 24427129 -193610029 + AluSx SINE Alu 1 300 -12 1608 140 29 59 chr3 24427129 24427301 -193609857 + AluJo SINE Alu 137 298 -14 1542 171 16 85 chr3 24427301 24427575 -193609583 - MER2 DNA MER2_type -94 251 6 246 114 0 0 chr3 24427579 24427614 -193609544 + MLT1B LTR MaLR 356 390 0 2237 55 0 24 chr3 24427666 24427980 -193609178 + AluY SINE Alu 7 311 0 330 26 0 0 chr3 24428002 24428041 -193609117 + (TG)n Simple_repeat Simple_repeat 1 39 0 812 183 106 134 chr3 24428065 24428364 -193608794 + L1MC5 LINE L1 7483 7766 -195 2297 114 62 0 chr3 24428364 24428716 -193608442 + L1MA5 LINE L1 5925 6298 -2 812 183 106 134 chr3 24428716 24428887 -193608271 + L1MC5 LINE L1 7766 7940 -21 549 304 89 57 chr3 24429053 24429610 -193607548 - L2 LINE L2 -3 3310 2713 588 264 158 29 chr3 24429818 24430252 -193606906 - MLT1G LTR MaLR 0 590 64 1969 210 114 62 chr3 24430383 24431060 -193606098 - MER50 LTR ERV1 -5 729 18 373 304 133 15 chr3 24432305 24432440 -193604718 + L2 LINE L2 3117 3267 -5 1095 190 33 5 chr3 24432461 24432645 -193604513 + MER5A DNA MER1_type 1 189 0 21 36 0 0 chr3 24432893 24432921 -193604237 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr3 24432947 24432976 -193604182 + AT_rich Low_complexity Low_complexity 1 29 0 264 271 12 35 chr3 24433854 24433939 -193603219 - Charlie8 DNA MER1_type -2309 108 26 2010 132 0 7 chr3 24434314 24434601 -193602557 + AluJb SINE Alu 3 287 -25 2289 96 7 0 chr3 24434859 24435152 -193602006 + AluSp SINE Alu 1 295 -18 2303 108 0 0 chr3 24435269 24435565 -193601593 + AluSg SINE Alu 1 296 -14 560 226 0 73 chr3 24435973 24436110 -193601048 - MIR SINE MIR -122 140 14 531 330 54 8 chr3 24436376 24436615 -193600543 + MIR SINE MIR 1 250 -12 1909 168 0 3 chr3 24436623 24436921 -193600237 + AluSx SINE Alu 1 297 -15 586 309 149 19 chr3 24437043 24437547 -193599611 - L2 LINE L2 0 3313 2722 214 286 65 13 chr3 24437547 24437624 -193599534 - L2 LINE L2 -719 2595 2515 226 293 300 20 chr3 24437797 24437947 -193599211 + MIR SINE MIR 45 236 -26 304 255 69 20 chr3 24438412 24438514 -193598644 - MIR SINE MIR 0 262 156 843 319 44 9 chr3 24438633 24439088 -193598070 + L1M4 LINE L1 4796 5266 -880 31 20 0 20 chr3 24439088 24439118 -193598040 + AT_rich Low_complexity Low_complexity 1 31 -17 2277 103 0 10 chr3 24439118 24439420 -193597738 - AluSx SINE Alu -13 299 1 31 20 0 20 chr3 24439420 24439438 -193597720 + AT_rich Low_complexity Low_complexity 31 48 0 6261 143 11 7 chr3 24439560 24441073 -193596085 - L1PA15 LINE L1 -21 6144 4631 567 256 83 119 chr3 24441910 24442499 -193594659 + MLT1K LTR MaLR 21 588 0 1632 198 0 0 chr3 24442739 24443012 -193594146 - AluJb SINE Alu -39 273 1 1515 200 72 9 chr3 24443012 24443332 -193593826 - MSTD LTR MaLR -56 340 1 276 340 7 42 chr3 24443949 24444093 -193593065 + MER91A DNA MER1_type 21 159 -37 258 95 0 0 chr3 24444325 24444367 -193592791 + (TG)n Simple_repeat Simple_repeat 1 42 0 234 105 0 0 chr3 24444367 24444405 -193592753 + (GA)n Simple_repeat Simple_repeat 2 39 0 477 0 0 0 chr3 24444407 24444460 -193592698 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 460 212 288 49 chr3 24444586 24444850 -193592308 - MLT1H LTR MaLR -2 547 221 922 211 93 26 chr3 24445102 24445372 -193591786 - MER33 DNA MER1_type -35 289 2 489 287 22 7 chr3 24445400 24445536 -193591622 - MIR SINE MIR -123 139 2 216 213 21 0 chr3 24446130 24446177 -193590981 + L2 LINE L2 3225 3272 0 306 159 0 0 chr3 24446637 24446706 -193590452 + CT-rich Low_complexity Low_complexity 2 70 0 2353 69 14 0 chr3 24446899 24447189 -193589969 - AluY SINE Alu -17 294 1 27 49 0 0 chr3 24447348 24447389 -193589769 + AT_rich Low_complexity Low_complexity 1 41 0 5625 78 11 13 chr3 24447391 24448108 -193589050 - L1PB1 LINE L1 0 6802 6087 1921 220 7 2 chr3 24448116 24448561 -193588597 - L1PB1 LINE L1 -783 6014 5568 264 394 6 28 chr3 24449131 24449311 -193587847 - L2 LINE L2 -232 3040 2865 198 396 68 9 chr3 24449536 24449857 -193587301 - L2 LINE L2 -744 2570 2231 312 274 232 18 chr3 24449878 24450042 -193587116 + MLT1L LTR MaLR 42 240 -375 295 281 99 26 chr3 24450093 24450285 -193586873 + MLT1J LTR MaLR 217 422 -89 13572 235 34 19 chr3 24450561 24453670 -193583488 - L1PB1 LINE L1 -1522 5275 1575 2168 134 0 0 chr3 24453670 24453969 -193583189 - AluSq SINE Alu -14 299 1 13572 235 34 19 chr3 24453969 24455566 -193581592 - L1PB1 LINE L1 -5222 1575 2 396 0 0 0 chr3 24456012 24456056 -193581102 + (GA)n Simple_repeat Simple_repeat 2 45 0 617 278 42 47 chr3 24456157 24456369 -193580789 - MIR SINE MIR -21 241 31 23 0 0 0 chr3 24456438 24456461 -193580697 + AT_rich Low_complexity Low_complexity 1 23 0 2246 83 0 0 chr3 24456467 24456744 -193580414 + AluSg SINE Alu 1 277 -33 2068 210 24 7 chr3 24457223 24457646 -193579512 - MER63B DNA MER1_type -1 435 6 198 396 68 9 chr3 24457933 24458254 -193578904 - L2 LINE L2 -744 2570 2231 346 251 246 17 chr3 24458275 24458454 -193578704 + MLT1L LTR MaLR 42 261 -354 413 286 117 23 chr3 24458490 24458756 -193578402 + MLT1J LTR MaLR 219 509 -2 21 0 0 0 chr3 24459905 24459926 -193577232 + AT_rich Low_complexity Low_complexity 1 21 0 240 35 0 0 chr3 24460196 24460225 -193576933 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 1180 114 5 22 chr3 24460240 24460424 -193576734 - AluSg/x SINE Alu 0 309 129 775 158 0 9 chr3 24460572 24460686 -193576472 - AluSq/x SINE Alu -199 114 2 2161 119 0 3 chr3 24460696 24460998 -193576160 - AluSc SINE Alu -8 301 1 232 247 82 41 chr3 24461018 24461115 -193576043 - L1ME LINE L1 -297 5873 5773 626 178 180 29 chr3 24461309 24461560 -193575598 - MLT1H1 LTR MaLR 0 555 279 282 225 25 100 chr3 24461696 24461816 -193575342 - MER103 DNA DNA -1 165 55 331 265 45 113 chr3 24462319 24462513 -193574645 - L1ME4a LINE L1 -115 6006 5855 1651 150 24 31 chr3 24462513 24462800 -193574358 + AluJo SINE Alu 11 295 -17 331 265 45 113 chr3 24462800 24463031 -193574127 - L1ME4a LINE L1 -266 5855 5610 259 353 12 0 chr3 24463233 24463318 -193573840 + L2 LINE L2 3102 3187 -85 458 244 282 24 chr3 24463343 24463630 -193573528 - L2 LINE L2 -4 3309 2949 1228 255 73 0 chr3 24463753 24464082 -193573076 - LTR16A LTR ERVL -9 441 89 280 154 39 0 chr3 24464084 24464136 -193573022 + LTR50 LTR ERVL 561 614 -181 606 262 99 44 chr3 24464346 24464640 -193572518 + LTR33A LTR ERVL 2 311 -212 403 284 103 4 chr3 24464659 24465023 -193572135 + LTR16A LTR ERVL 17 450 0 * 657 199 78 6 chr3 24465023 24465187 -193571971 + LTR33A LTR ERVL 320 495 -28 6546 159 14 3 chr3 24465188 24466935 -193570223 + L1P5 LINE L1 4020 5780 -371 1145 63 0 0 chr3 24466935 24467074 -193570084 + L1PB1 LINE L1 6009 6150 -1 229 214 0 0 chr3 24467078 24467120 -193570038 + LTR33A LTR ERVL 482 523 0 24 0 0 0 chr3 24467199 24467223 -193569935 + AT_rich Low_complexity Low_complexity 1 24 0 1053 209 0 0 chr3 24467249 24467426 -193569732 - MER8 DNA MER2_type -62 177 1 2894 157 70 67 chr3 24467489 24468101 -193569057 - LTR18B LTR ERVL 0 614 1 399 206 10 10 chr3 24468352 24468449 -193568709 + MER96 DNA MER1_type? 1 97 -78 823 92 92 46 chr3 24468479 24468610 -193568548 + FRAM SINE Alu 33 169 -7 1258 199 170 26 chr3 24468765 24469264 -193567894 - LTR50 LTR ERVL -104 691 30 341 215 21 43 chr3 24469263 24469356 -193567802 - MLT1E LTR MaLR -502 91 1 * 2250 102 0 3 chr3 24470104 24470397 -193566761 + AluSc SINE Alu 1 292 -17 336 90 0 90 chr3 24470594 24470661 -193566497 - MER53 DNA DNA 0 189 129 * 719 180 30 6 chr3 24470638 24470805 -193566353 + MER53 DNA DNA 7 177 -12 * 862 159 29 0 chr3 24470655 24470825 -193566333 - MER53 DNA DNA -12 177 3 462 78 0 0 chr3 24472086 24472150 -193565008 - Alu SINE Alu -9 302 239 265 128 0 0 chr3 24472150 24472189 -193564969 - Alu SINE Alu -263 39 1 2022 131 66 102 chr3 24472950 24473022 -193564136 - MSTB LTR MaLR 0 426 353 2074 121 4 4 chr3 24473022 24473303 -193563855 + AluSx SINE Alu 1 281 -31 2022 131 66 102 chr3 24473303 24473672 -193563486 - MSTB LTR MaLR -73 353 1 1542 212 98 109 chr3 24474153 24474972 -193562186 - Charlie2 DNA MER1_type -4 2858 2052 2098 129 7 0 chr3 24474972 24475266 -193561892 + AluSx SINE Alu 1 296 -16 1542 212 98 109 chr3 24475266 24475461 -193561697 - Charlie2 DNA MER1_type -810 2052 1856 1243 192 123 44 chr3 24475493 24475899 -193561259 - LTR56 LTR ERV1 0 445 8 965 190 84 18 chr3 24475903 24476129 -193561029 - Charlie2 DNA MER1_type -2465 317 77 411 194 32 0 chr3 24476175 24476268 -193560890 + MER5A DNA MER1_type 14 109 -80 1200 138 11 5 chr3 24477692 24477880 -193559278 + MER5A DNA MER1_type 1 189 0 882 150 0 8 chr3 24478171 24478304 -193558854 + AluJo SINE Alu 5 136 -176 225 282 107 0 chr3 24479073 24479176 -193557982 - MIR3 SINE MIR -23 185 72 291 299 11 0 chr3 24479202 24479289 -193557869 - MIR3 SINE MIR -112 96 9 795 211 47 6 chr3 24479414 24479585 -193557573 + MER5B DNA MER1_type 1 178 0 2197 96 7 0 chr3 24479679 24479980 -193557178 - AluSp SINE Alu 0 303 1 270 259 0 0 chr3 24480610 24480664 -193556494 - L2 LINE L2 -10 3303 3250 490 139 12 35 chr3 24481387 24481473 -193555685 + FLAM_A SINE Alu 48 131 -11 2379 91 3 10 chr3 24481473 24481780 -193555378 + AluSx SINE Alu 1 305 -7 819 246 6 62 chr3 24482175 24482272 -193554886 + L1MC5 LINE L1 7611 7712 -249 1429 160 91 61 chr3 24482272 24482647 -193554511 + MLT1B LTR MaLR 1 386 -4 819 246 6 62 chr3 24482647 24482874 -193554284 + L1MC5 LINE L1 7712 7917 -44 22 0 0 0 chr3 24483007 24483029 -193554129 + AT_rich Low_complexity Low_complexity 1 22 0 519 271 83 48 chr3 24483119 24483348 -193553810 - MIR SINE MIR -6 256 20 909 275 56 51 chr3 24483879 24484327 -193552831 + L2 LINE L2 2860 3309 -4 240 291 89 0 chr3 24484418 24484497 -193552661 - L2 LINE L2 -204 3068 2983 280 146 55 0 chr3 24484500 24484555 -193552603 + MLT1D LTR MaLR 1 58 -447 2310 123 27 30 chr3 24484566 24484919 -193552239 - THE1C LTR MaLR 0 375 22 6476 60 8 42 chr3 24484919 24485774 -193551384 - LTR12 LTR ERV1 0 826 1 2310 123 27 30 chr3 24485774 24485793 -193551365 - THE1C LTR MaLR -353 22 4 2034 173 33 62 chr3 24485793 24486237 -193550921 + MLT1D LTR MaLR 75 505 0 1415 277 40 3 chr3 24486474 24486853 -193550305 + LTR16A LTR ERVL 54 446 -4 216 301 86 0 chr3 24486940 24487033 -193550125 - L2 LINE L2 -644 2670 2570 3196 122 33 2 chr3 24487119 24487756 -193549402 + L1MA8 LINE L1 5111 5768 -523 13098 111 12 14 chr3 24487757 24488741 -193548417 + Tigger1 DNA MER2_type 486 1470 -948 2304 94 0 38 chr3 24488741 24489059 -193548099 + AluY SINE Alu 1 306 -5 13098 111 12 14 chr3 24489059 24489559 -193547599 + Tigger1 DNA MER2_type 1470 1969 -449 2309 102 7 0 chr3 24489559 24489862 -193547296 + AluY SINE Alu 1 305 -6 13098 111 12 14 chr3 24489862 24490188 -193546970 + Tigger1 DNA MER2_type 1969 2297 -121 354 45 0 0 chr3 24490188 24490232 -193546926 + (TA)n Simple_repeat Simple_repeat 1 44 0 13098 111 12 14 chr3 24490232 24490352 -193546806 + Tigger1 DNA MER2_type 2297 2416 -2 924 159 34 0 chr3 24490352 24490528 -193546630 + L1MA8 LINE L1 6106 6287 -4 290 226 123 45 chr3 24490719 24490803 -193546355 - L3 LINE CR1 -92 1485 1409 2710 99 11 8 chr3 24490803 24491175 -193545983 + THE1C LTR MaLR 1 373 -2 290 226 123 45 chr3 24491175 24491245 -193545913 - L3 LINE CR1 -168 1409 1319 470 300 111 37 chr3 24491257 24491433 -193545725 + MIR SINE MIR 2 164 -98 2496 51 7 3 chr3 24491433 24491729 -193545429 + AluY SINE Alu 1 297 -14 2304 108 3 0 chr3 24491735 24492032 -193545126 + AluSg SINE Alu 1 298 -12 470 300 111 37 chr3 24492032 24492091 -193545067 + MIR SINE MIR 168 262 0 790 212 58 32 chr3 24493001 24493190 -193543968 + MER63B DNA MER1_type 1 194 -242 207 88 29 0 chr3 24493205 24493239 -193543919 + (CTCA)n Simple_repeat Simple_repeat 1 35 0 236 111 0 0 chr3 24493242 24493278 -193543880 - L2 LINE L2 -1 3271 3236 2110 238 58 49 chr3 24493449 24494205 -193542953 + L2 LINE L2 1968 2730 -584 2360 69 0 44 chr3 24494311 24494630 -193542528 - AluY SINE Alu -6 305 1 443 113 21 124 chr3 24494842 24494878 -193542280 - L1ME1 LINE L1 -8 6158 6120 1633 173 95 0 chr3 24494878 24495162 -193541996 - AluJb SINE Alu -1 311 1 443 113 21 124 chr3 24495162 24495222 -193541936 - L1ME1 LINE L1 -46 6120 6072 3349 107 95 38 chr3 24495369 24495911 -193541247 + LTR24C LTR ERV1 1 582 -53 1895 139 0 7 chr3 24495911 24496184 -193540974 - AluSx SINE Alu -21 291 21 3349 107 95 38 chr3 24496184 24496240 -193540918 + LTR24C LTR ERV1 582 633 -2 1733 186 34 33 chr3 24496243 24496660 -193540498 + MLT2B1 LTR ERVL 1 414 0 45 79 0 0 chr3 24497037 24497138 -193540020 + AT_rich Low_complexity Low_complexity 1 101 0 229 289 165 10 chr3 24497227 24497324 -193539834 + MIR SINE MIR 16 127 -81 455 302 121 0 chr3 24497325 24497474 -193539684 - MER96 DNA MER1_type? -3 172 6 254 303 13 0 chr3 24497479 24497555 -193539603 + MIR3 SINE MIR 120 196 -12 22 0 0 0 chr3 24497946 24497968 -193539190 + AT_rich Low_complexity Low_complexity 1 22 0 1785 169 53 11 chr3 24497995 24498351 -193538807 - MER63 DNA MER1_type 0 1061 691 2105 227 100 27 chr3 24498799 24499494 -193537664 + Charlie7 DNA MER1_type 1660 2415 -197 875 178 33 11 chr3 24499494 24499674 -193537484 - L1PA16 LINE L1 -14 6152 5969 2105 227 100 27 chr3 24499674 24499727 -193537431 + Charlie7 DNA MER1_type 2415 2463 -149 433 217 0 0 chr3 24499727 24499810 -193537348 + MER5A DNA MER1_type 12 94 -95 231 222 74 0 chr3 24500094 24500148 -193537010 - MIR SINE MIR 0 262 205 266 237 17 0 chr3 24500157 24500216 -193536942 - MIR SINE MIR -201 61 2 237 237 10 62 chr3 24500221 24500318 -193536840 + Charlie7 DNA MER1_type 2516 2607 -5 191 258 240 73 chr3 24500499 24500774 -193536384 + L2 LINE L2 2991 3311 -2 253 368 8 8 chr3 24501049 24501166 -193535992 + MIR SINE MIR 29 145 -63 1859 137 25 11 chr3 24501653 24501938 -193535220 - AluJo SINE Alu -21 291 3 29 47 0 0 chr3 24501942 24501985 -193535173 + AT_rich Low_complexity Low_complexity 1 43 0 201 176 0 0 chr3 24502044 24502078 -193535080 + A-rich Low_complexity Low_complexity 1 34 0 2058 103 4 0 chr3 24502115 24502378 -193534780 - AluSx SINE Alu -21 291 28 339 315 63 0 chr3 24503695 24503822 -193533336 + L3b LINE CR1 1361 1495 -88 1036 304 59 17 chr3 24505527 24505988 -193531170 - L2 LINE L2 -2 3311 2832 908 239 167 61 chr3 24506717 24507160 -193529998 + MLT1G1 LTR MaLR 60 588 -6 712 324 81 29 chr3 24508130 24508675 -193528483 + L2 LINE L2 2694 3272 0 240 227 164 27 chr3 24508945 24509055 -193528103 - L2 LINE L2 -2 3311 3187 2644 33 7 0 chr3 24509448 24509749 -193527409 - AluY SINE Alu -8 303 1 337 273 148 68 chr3 24510125 24510403 -193526755 + MLT1H LTR MaLR 13 312 -237 379 198 51 3 chr3 24510479 24510586 -193526572 + MLT1H LTR MaLR 281 549 0 261 296 111 0 chr3 24510618 24510699 -193526459 - MIR SINE MIR -160 102 13 595 221 123 0 chr3 24511023 24511177 -193525981 + MIR SINE MIR 66 238 -24 1061 270 83 62 chr3 24511259 24511908 -193525250 + MLT2F LTR ERVL 1 663 0 210 71 0 0 chr3 24512860 24512888 -193524270 + (A)n Simple_repeat Simple_repeat 1 28 0 585 257 26 2 chr3 24513206 24513371 -193523787 + L1ME3A LINE L1 5640 5811 -379 2110 179 57 18 chr3 24513387 24513828 -193523330 - MLT1C LTR MaLR 0 467 10 501 269 58 6 chr3 24513836 24514007 -193523151 + L1ME3A LINE L1 5798 5977 -193 393 231 213 0 chr3 24514066 24514226 -193522932 + L1ME3A LINE L1 5962 6155 -15 423 180 129 43 chr3 24514230 24514369 -193522789 + MIR3 SINE MIR 23 173 -35 504 339 23 14 chr3 24514474 24514695 -193522463 + MIR SINE MIR 21 243 -19 2054 85 59 7 chr3 24515254 24515525 -193521633 + AluSp SINE Alu 1 285 -28 2335 88 3 10 chr3 24516056 24516361 -193520797 + AluSx SINE Alu 1 303 -9 345 314 111 5 chr3 24516973 24517183 -193519975 - MIR SINE MIR -6 256 18 193 211 105 0 chr3 24517199 24517256 -193519902 + L2 LINE L2 3209 3271 -1 590 301 5 16 chr3 24518211 24518321 -193518837 - MIR SINE MIR -2 260 151 1167 203 106 31 chr3 24518321 24518641 -193518517 + MER2 DNA MER2_type 1 344 0 590 301 5 16 chr3 24518641 24518723 -193518435 - MIR SINE MIR -111 151 70 388 200 42 42 chr3 24518810 24518930 -193518228 - MLT1L LTR MaLR 0 615 496 379 224 37 82 chr3 24519083 24519187 -193517971 - MLT1L LTR MaLR -337 278 180 1871 160 80 35 chr3 24519187 24519562 -193517596 + MSTD LTR MaLR 1 392 -4 379 224 37 82 chr3 24519562 24519591 -193517567 - MLT1L LTR MaLR -435 180 151 358 213 37 56 chr3 24519680 24519788 -193517370 + MIR SINE MIR 98 203 -59 1488 244 98 12 chr3 24520100 24520518 -193516640 - LTR16A1 LTR ERVL -1 456 3 307 221 0 15 chr3 24520532 24520600 -193516558 + LTR67 LTR ERVL 491 557 0 22 0 0 0 chr3 24521036 24521058 -193516100 + AT_rich Low_complexity Low_complexity 1 22 0 382 315 31 0 chr3 24522140 24522270 -193514888 + MIR SINE MIR 92 225 -37 358 254 46 46 chr3 24523229 24523359 -193513799 - MER94 DNA DNA -1 133 4 308 130 0 0 chr3 24523359 24523405 -193513753 - LTR16C LTR ERVL 0 491 446 6889 141 23 5 chr3 24523468 24523962 -193513196 + Tigger3b DNA MER2_type 110 594 -2434 2002 116 48 61 chr3 24523962 24524340 -193512818 - THE1C LTR MaLR -2 373 1 6889 141 23 5 chr3 24524340 24524947 -193512211 + Tigger3b DNA MER2_type 594 1231 0 1111 289 79 38 chr3 24524947 24525365 -193511793 - LTR16C LTR ERVL -56 435 1 5984 87 33 0 chr3 24525961 24526799 -193510359 + L1PA13 LINE L1 5284 6149 -14 328 251 66 71 chr3 24526918 24527101 -193510057 - MLT1K LTR MaLR -5 583 402 259 274 50 37 chr3 24527826 24527985 -193509173 + MIR SINE MIR 19 183 -64 700 278 117 40 chr3 24528683 24529007 -193508151 - MLT1J2 LTR MaLR 0 450 102 6280 79 38 0 chr3 24529110 24529906 -193507252 + LTR12 LTR ERV1 1 826 0 437 256 89 1 chr3 24529913 24530040 -193507118 - MIR SINE MIR -67 141 6 1187 269 153 56 chr3 24530715 24531276 -193505882 - MLT1G1 LTR MaLR -2 588 1 450 290 55 0 chr3 24531353 24531498 -193505660 - MIR SINE MIR -64 198 46 2177 105 14 24 chr3 24531950 24532271 -193504887 - AluSg SINE Alu 0 310 1 255 188 21 0 chr3 24532272 24532320 -193504838 + MER94 DNA DNA 27 75 -59 577 190 9 9 chr3 24532337 24532453 -193504705 + L1ME3 LINE L1 6039 6154 -8 344 243 0 0 chr3 24532478 24532552 -193504606 + MER94 DNA DNA 61 134 0 2323 112 18 68 chr3 24532792 24533175 -193503983 - THE1B LTR MaLR 0 364 1 7524 91 243 37 chr3 24533175 24534485 -193502673 - THE1B-int LTR MaLR 0 1580 1 1221 121 25 3 chr3 24534485 24534764 -193502394 - THE1B LTR MaLR 0 364 2 214 290 0 14 chr3 24534767 24534836 -193502322 + (TGG)n Simple_repeat Simple_repeat 3 70 0 912 198 6 0 chr3 24534850 24535007 -193502151 - FRAM SINE Alu -22 154 1 250 155 10 52 chr3 24535077 24535174 -193501984 + (TGG)n Simple_repeat Simple_repeat 2 94 0 291 153 24 12 chr3 24535235 24535320 -193501838 + (TGG)n Simple_repeat Simple_repeat 3 88 0 351 305 23 15 chr3 24535872 24536003 -193501155 - MIR SINE MIR -23 239 108 1834 158 13 13 chr3 24536149 24536460 -193500698 - AluJb SINE Alu -1 311 1 6276 94 36 0 chr3 24536466 24537563 -193499595 - L1PA13 LINE L1 0 6163 5054 194 203 186 0 chr3 24539248 24539307 -193497851 - L2 LINE L2 0 3272 3203 262 189 19 0 chr3 24539332 24539385 -193497773 - MIR SINE MIR -101 161 108 187 311 39 39 chr3 24539411 24539514 -193497644 - L2 LINE L2 -93 3220 3118 1439 314 126 34 chr3 24539856 24541154 -193496004 - L2 LINE L2 -1764 1550 133 214 333 35 0 chr3 24542546 24542633 -193494525 - MIR SINE MIR -71 191 102 369 111 16 0 chr3 24542827 24542890 -193494268 + L1PA16 LINE L1 6103 6166 0 705 270 54 35 chr3 24543153 24543468 -193493690 - L1MC4a LINE L1 -1965 5843 5523 252 301 142 43 chr3 24543477 24543759 -193493399 - L1P LINE L1 -2311 3835 3526 599 323 99 39 chr3 24543786 24544550 -193492608 - L1MC4a LINE L1 -2660 3486 2677 253 242 0 30 chr3 24544702 24544768 -193492390 + GA-rich Low_complexity Low_complexity 6 69 0 314 198 20 69 chr3 24545544 24545645 -193491513 + HsTC2 DNA Tc2 19 1832 -66 629 211 105 23 chr3 24545652 24545823 -193491335 + HsTC2 DNA Tc2 1265 1449 -449 1554 260 67 33 chr3 24545823 24546242 -193490916 - LTR16A LTR ERVL 0 450 18 1347 215 34 20 chr3 24546258 24546607 -193490551 + HsTC2 DNA Tc2 1444 1797 -101 243 182 0 73 chr3 24546614 24546669 -193490489 - HsTC2 DNA Tc2 -567 1331 1281 371 252 93 29 chr3 24546670 24546809 -193490349 - HsTC2 DNA Tc2 -1750 148 1 1619 223 45 19 chr3 24546872 24547310 -193489848 - L1ME3A LINE L1 -5 6165 5717 254 217 150 0 chr3 24547310 24547370 -193489788 + Tigger2 DNA MER2_type 2 70 -2648 * 2446 140 69 9 chr3 24547357 24547778 -193489380 + Tigger2 DNA MER2_type 2273 2718 0 1782 178 68 11 chr3 24547795 24548149 -193489009 - MLT1A2 LTR MaLR 0 374 1 559 268 13 19 chr3 24548168 24548325 -193488833 - L1ME3A LINE L1 -512 5658 5503 898 315 74 30 chr3 24548406 24548878 -193488280 - LTR16B LTR ERVL 0 464 1 1914 321 62 47 chr3 24549306 24550859 -193486299 - HERV16 LTR ERVL -477 5008 3134 627 227 220 86 chr3 24551333 24551820 -193485338 + MLT1H1 LTR MaLR 1 505 0 1218 259 51 45 chr3 24552497 24553144 -193484014 - L2 LINE L2 -5 3308 2656 2182 88 20 39 chr3 24553144 24553449 -193483709 + AluSg SINE Alu 1 299 -11 1218 259 51 45 chr3 24553449 24553521 -193483637 - L2 LINE L2 -657 2656 2586 201 331 66 16 chr3 24554437 24554558 -193482600 - L2 LINE L2 -5 3308 3182 3573 190 90 11 chr3 24554728 24555542 -193481616 + MER63C DNA MER1_type 53 930 0 966 82 0 70 chr3 24555555 24555713 -193481445 + L1PA15 LINE L1 6014 6160 -5 1763 182 162 43 chr3 24556532 24557021 -193480137 + LTR10A LTR ERV1 1 547 -62 546 255 71 64 chr3 24557021 24557303 -193479855 + LTR10A-int LTR ERV1 6 289 -6360 27678 218 15 25 chr3 24557361 24564726 -193472432 + LTR10A-int LTR ERV1 501 6649 0 1932 171 90 84 chr3 24564726 24565271 -193471887 + LTR10A LTR ERV1 1 548 -61 2188 136 3 3 chr3 24565392 24565702 -193471456 + AluSx SINE Alu 1 310 -2 551 252 14 7 chr3 24566363 24566506 -193470652 - MIR SINE MIR 0 262 119 1127 179 13 79 chr3 24566705 24567023 -193470135 + L1M4 LINE L1 4838 5134 -1012 1632 165 10 3 chr3 24567023 24567314 -193469844 + L1MC1 LINE L1 6040 6332 -1 585 252 18 0 chr3 24568278 24568478 -193468680 - L1ME3A LINE L1 -197 5973 5769 392 180 0 11 chr3 24568660 24568749 -193468409 + CT-rich Low_complexity Low_complexity 3 90 0 808 188 0 0 chr3 24568749 24568882 -193468276 - FLAM_A SINE Alu 0 133 1 324 0 0 0 chr3 24569467 24569503 -193467655 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1447 181 14 55 chr3 24569507 24569664 -193467494 - AluJo SINE Alu -31 281 119 183 80 0 0 chr3 24569664 24569689 -193467469 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 5452 114 19 27 chr3 24569695 24571532 -193465626 - L1PA16 LINE L1 -10 6156 4303 1447 181 14 55 chr3 24571532 24571660 -193465498 - AluJo SINE Alu -198 114 1 2108 125 0 22 chr3 24571671 24571990 -193465168 - AluSx SINE Alu 0 312 1 771 226 23 95 chr3 24572244 24572388 -193464770 - MLT1H LTR MaLR -243 306 194 2147 197 18 83 chr3 24572388 24572941 -193464217 + LTR40a LTR ERVL 1 517 -2 771 226 23 95 chr3 24572941 24573102 -193464056 - MLT1H LTR MaLR -355 194 23 1396 218 32 50 chr3 24573695 24574072 -193463086 + L1MB7 LINE L1 17 386 -6156 1355 186 17 24 chr3 24574077 24574330 -193462828 + L1MB7 LINE L1 5206 5458 -1186 1926 121 51 75 chr3 24574330 24574527 -193462631 + THE1B LTR MaLR 1 186 -178 2277 121 0 3 chr3 24574527 24574841 -193462317 - AluSq SINE Alu 0 313 1 1926 121 51 75 chr3 24574841 24575016 -193462142 + THE1B LTR MaLR 186 364 0 1355 186 17 24 chr3 24575016 24575058 -193462100 + L1MB7 LINE L1 5458 5499 -1145 3639 179 46 35 chr3 24575061 24575909 -193461249 + L1MB7 LINE L1 5818 6674 -8 219 267 30 8 chr3 24576915 24577046 -193460112 + (TA)n Simple_repeat Simple_repeat 2 135 0 264 178 0 0 chr3 24577361 24577406 -193459752 + MLT1H LTR MaLR 489 533 -16 1697 153 3 28 chr3 24578279 24578585 -193458573 - AluJo SINE Alu 0 308 10 764 283 22 5 chr3 24579334 24579518 -193457640 - MIR SINE MIR -73 189 3 2673 153 40 9 chr3 24579533 24579984 -193457174 + MLT1C LTR MaLR 1 465 -2 1957 111 62 108 chr3 24580161 24580631 -193456527 - LTR7 LTR ERV1 -2 448 1 201 108 0 0 chr3 24580986 24581023 -193456135 + (A)n Simple_repeat Simple_repeat 1 37 0 282 209 15 0 chr3 24581064 24581131 -193456027 - LTR16C LTR ERVL -4 487 420 844 242 98 49 chr3 24581367 24581694 -193455464 - LTR16C LTR ERVL -79 412 70 245 239 34 23 chr3 24582911 24582999 -193454159 + MLT1J LTR MaLR 398 486 -25 442 250 6 76 chr3 24583314 24583486 -193453672 - MLT1J1 LTR MaLR -3 443 284 2024 193 51 0 chr3 24583623 24584037 -193453121 + L1MC1 LINE L1 43 477 -5949 5218 57 3 13 chr3 24584047 24584682 -193452476 + SVA Other Other 758 1386 0 3513 132 56 0 chr3 24584938 24585544 -193451614 + L1MC1 LINE L1 493 1132 -5294 4501 240 65 26 chr3 24585547 24585888 -193451270 + L1MC1 LINE L1 1225 1551 -4875 189 0 0 0 chr3 24585888 24585909 -193451249 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 4501 240 65 26 chr3 24585909 24586899 -193450259 + L1MC1 LINE L1 1551 2501 -3925 2224 97 0 32 chr3 24586899 24587208 -193449950 + AluY SINE Alu 1 299 -12 4501 240 65 26 chr3 24587208 24588032 -193449126 + L1MC1 LINE L1 2501 3291 -3135 1617 174 89 0 chr3 24588032 24588314 -193448844 + AluJo SINE Alu 1 307 -5 4501 240 65 26 chr3 24588314 24589391 -193447767 + L1MC1 LINE L1 3291 4716 -1710 1702 135 27 61 chr3 24589391 24589848 -193447310 - Tigger5 DNA MER2_type 0 2323 8 2244 189 4 0 chr3 24589876 24590348 -193446810 + L1MC1 LINE L1 4737 5210 -1216 523 223 32 37 chr3 24590349 24590537 -193446621 + L1MC1 LINE L1 5323 5509 -917 1132 183 0 0 chr3 24590657 24590843 -193446315 + AluJb SINE Alu 115 300 -12 5486 138 33 13 chr3 24590844 24591273 -193445885 + L1MC1 LINE L1 5588 6007 -606 2291 113 30 30 chr3 24591273 24591637 -193445521 + THE1B LTR MaLR 1 364 0 12190 78 6 1 chr3 24591637 24593206 -193443952 + THE1B-int LTR MaLR 1 1578 -2 2251 127 30 22 chr3 24593208 24593569 -193443589 + THE1B LTR MaLR 1 364 0 5486 138 33 13 chr3 24593569 24594122 -193443036 + L1MC1 LINE L1 6007 6594 -19 1338 121 16 0 chr3 24594435 24594625 -193442533 - AluSq SINE Alu -8 305 113 8620 180 37 17 chr3 24594636 24595788 -193441370 + L1P4 LINE L1 3240 4367 -1799 189 0 0 0 chr3 24595788 24595809 -193441349 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 8620 180 37 17 chr3 24595809 24596885 -193440273 + L1P4 LINE L1 4367 5505 -661 1983 219 68 11 chr3 24598184 24598756 -193438402 + L1ME3A LINE L1 5564 6168 -2 609 241 163 0 chr3 24599236 24599377 -193437781 - MER5A DNA MER1_type 0 189 26 24 0 0 0 chr3 24599434 24599458 -193437700 + AT_rich Low_complexity Low_complexity 1 24 0 2240 117 0 0 chr3 24599479 24599779 -193437379 + AluSx SINE Alu 1 300 -12 23 33 0 0 chr3 24599784 24599814 -193437344 + AT_rich Low_complexity Low_complexity 1 30 0 3610 123 9 16 chr3 24599814 24600213 -193436945 - L1MB3 LINE L1 -4 6179 5784 1805 148 44 44 chr3 24600213 24600578 -193436580 + MLT1A1 LTR MaLR 1 365 0 3610 123 9 16 chr3 24600578 24600755 -193436403 - L1MB3 LINE L1 -399 5784 5607 716 211 155 92 chr3 24600853 24601312 -193435846 + MLT1G1 LTR MaLR 108 595 0 348 125 11 91 chr3 24651348 24651436 -193385722 + LTR37B LTR ERV1 384 464 -4 2243 92 0 0 chr3 24651612 24651915 -193385243 + AluSx SINE Alu 1 303 -9 252 275 96 6 chr3 24651929 24652107 -193385051 + L1ME LINE L1 5704 5897 -224 1780 181 23 20 chr3 24652918 24653267 -193383891 + MLT1B LTR MaLR 41 390 0 629 291 35 6 chr3 24653752 24653924 -193383234 - MIR3 SINE MIR 0 208 32 1322 172 66 3 chr3 24654018 24654320 -193382838 - MER33 DNA MER1_type -2 322 2 692 218 93 79 chr3 24654599 24654815 -193382343 + MIR SINE MIR 23 241 -21 605 182 56 5 chr3 24655079 24655219 -193381939 - MLT1G LTR MaLR -1 571 429 299 316 20 10 chr3 24655235 24655333 -193381825 - MIR SINE MIR -161 101 3 1050 242 35 38 chr3 24655340 24655424 -193381734 + MER46C DNA MER2_type 1 84 -254 1893 152 0 13 chr3 24655424 24655733 -193381425 + AluSx SINE Alu 1 305 -7 1050 242 35 38 chr3 24655733 24655987 -193381171 + MER46C DNA MER2_type 84 338 0 493 286 51 10 chr3 24655987 24656178 -193380980 - MIR SINE MIR -5 257 59 1354 191 98 9 chr3 24657399 24657840 -193379318 - MER119 DNA MER1_type 0 583 6 2324 77 7 0 chr3 24659062 24659361 -193377797 + AluY SINE Alu 1 301 -10 505 300 177 9 chr3 24660192 24660412 -193376746 + MIR SINE MIR 4 260 -2 184 270 16 16 chr3 24660443 24660506 -193376652 - L2 LINE L2 -10 3262 3200 263 309 108 14 chr3 24661245 24661384 -193375774 - MIR3 SINE MIR -55 153 2 2151 110 7 0 chr3 24661518 24661817 -193375341 + AluSc SINE Alu 1 301 -8 361 333 8 8 chr3 24661854 24661980 -193375178 + L2 LINE L2 3187 3312 -1 992 134 0 0 chr3 24662031 24662173 -193374985 - MER50 LTR ERV1 -23 711 570 1387 148 0 4 chr3 24662174 24662403 -193374755 + AluJb SINE Alu 71 298 -14 3120 160 25 23 chr3 24662404 24662966 -193374192 - MER50 LTR ERV1 -163 571 9 191 188 21 21 chr3 24662974 24663022 -193374136 + MIR SINE MIR 65 112 -150 532 212 27 94 chr3 24664464 24664766 -193372392 - MLT1H LTR MaLR -56 493 172 2631 183 118 11 chr3 24664775 24665316 -193371842 - MER77 LTR ERV1 -6 599 1 336 213 220 21 chr3 24665316 24665452 -193371706 - MLT1H LTR MaLR -373 176 13 198 310 76 57 chr3 24665523 24665681 -193371477 + L2 LINE L2 2919 3079 -193 528 146 9 27 chr3 24666839 24666949 -193370209 - L1MA3 LINE L1 0 6305 6198 512 248 159 13 chr3 24667283 24667440 -193369718 - MER5A DNA MER1_type -1 188 9 317 188 47 16 chr3 24667459 24667523 -193369635 - MER5B DNA MER1_type 0 178 113 895 182 62 0 chr3 24667556 24667732 -193369426 + MER5A DNA MER1_type 3 189 0 288 230 10 100 chr3 24667742 24667842 -193369316 + L1MC4 LINE L1 7413 7503 -539 367 293 89 73 chr3 24667843 24668034 -193369124 + L1MC4 LINE L1 7764 7957 -85 283 330 36 0 chr3 24668085 24668197 -193368961 + MER5A DNA MER1_type 8 123 -66 734 244 45 98 chr3 24668272 24668628 -193368530 - MER102b DNA MER1_type -4 337 1 306 320 48 8 chr3 24669128 24669253 -193367905 + MIR3 SINE MIR 41 170 -38 2143 99 0 7 chr3 24669892 24670194 -193366964 + AluSc SINE Alu 1 300 -9 502 241 30 0 chr3 24670397 24670530 -193366628 + L1MC5 LINE L1 7789 7925 -36 1069 125 12 0 chr3 24671205 24671365 -193365793 + AluSg/x SINE Alu 138 299 -13 510 301 0 14 chr3 24671807 24671953 -193365205 - MIR3 SINE MIR -9 199 56 378 206 69 29 chr3 24672224 24672326 -193364832 - MER67A LTR ERV1 0 543 438 397 308 30 23 chr3 24672352 24672485 -193364673 - L2 LINE L2 -5 3267 3134 1679 267 117 9 chr3 24672555 24673087 -193364071 - MLT1G1 LTR MaLR 0 595 7 234 255 124 87 chr3 24673133 24673294 -193363864 - L2 LINE L2 -237 3035 2869 1215 218 102 95 chr3 24673421 24673933 -193363225 - MLT1G LTR MaLR -7 583 65 2033 100 14 3 chr3 24673933 24674222 -193362936 - AluSq SINE Alu -21 292 1 1215 218 102 95 chr3 24674222 24674279 -193362879 - MLT1G LTR MaLR -525 65 10 520 256 7 29 chr3 24674289 24674426 -193362732 + MER94 DNA DNA 1 134 0 387 239 0 62 chr3 24675674 24675687 -193361471 + MER81 DNA DNA 1 13 -101 1580 186 40 45 chr3 24675687 24675853 -193361305 + MLT1A2 LTR MaLR 1 166 -208 249 33 0 0 chr3 24675853 24675883 -193361275 + (TC)n Simple_repeat Simple_repeat 1 30 0 1580 186 40 45 chr3 24675883 24676092 -193361066 + MLT1A2 LTR MaLR 166 374 0 387 239 0 62 chr3 24676092 24676191 -193360967 + MER81 DNA DNA 13 106 -8 229 153 85 0 chr3 24676806 24676865 -193360293 + LTR37B LTR ERV1 5 68 -400 2332 82 0 0 chr3 24676994 24677298 -193359860 - AluY SINE Alu -7 304 1 384 225 0 0 chr3 24677363 24677443 -193359715 + LTR37B LTR ERV1 200 279 -189 489 318 92 5 chr3 24677544 24677761 -193359397 - L1ME LINE L1 -430 5740 5505 309 292 77 15 chr3 24677794 24677989 -193359169 - L1ME LINE L1 -1306 4840 4634 1803 159 37 57 chr3 24677995 24678378 -193358780 - THE1C LTR MaLR 0 375 1 304 253 163 0 chr3 24678428 24678594 -193358564 - L1ME LINE L1 -1562 4584 4392 * 683 342 48 12 chr3 24678592 24679007 -193358151 + L1MC4a LINE L1 5434 5863 -1945 * 721 220 12 0 chr3 24679005 24679178 -193357980 - L1ME LINE L1 -3009 3137 2963 * 41647 66 7 2 chr3 24679175 24685300 -193351858 - L1PA6 LINE L1 0 6154 3 1268 232 13 3 chr3 24685301 24685616 -193351542 - L1ME LINE L1 -3169 2977 2660 220 256 0 0 chr3 24685813 24685856 -193351302 + polypyrimidine Low_complexity Low_complexity 1 43 0 368 290 11 0 chr3 24686534 24686627 -193350531 + L2 LINE L2 3178 3271 -1 288 137 0 0 chr3 24686874 24686925 -193350233 + (CA)n Simple_repeat Simple_repeat 1 51 0 833 274 52 110 chr3 24688254 24688699 -193348459 - LTR16C LTR ERVL 0 491 73 453 288 18 0 chr3 24689602 24689713 -193347445 - MER5A DNA MER1_type -5 184 72 2372 108 33 28 chr3 24689737 24690097 -193347061 + THE1B LTR MaLR 1 362 -2 196 278 139 14 chr3 24690500 24690572 -193346586 - L2 LINE L2 -2 3270 3190 2571 155 19 19 chr3 24690623 24691055 -193346103 - MSTB1 LTR MaLR 0 432 1 189 207 230 35 chr3 24692310 24692397 -193344761 + L2 LINE L2 3199 3302 -11 2015 188 30 37 chr3 24692399 24692642 -193344516 + L1ME2 LINE L1 5727 5970 -194 1115 201 52 101 chr3 24692642 24692796 -193344362 + MLT1A2 LTR MaLR 4 164 -210 2076 105 0 3 chr3 24692796 24693107 -193344051 + AluSc SINE Alu 1 309 0 1115 201 52 101 chr3 24693107 24693340 -193343818 + MLT1A2 LTR MaLR 164 372 -2 2015 188 30 37 chr3 24693340 24693352 -193343806 + L1ME2 LINE L1 5970 5981 -183 1688 153 28 92 chr3 24693352 24693752 -193343406 - MLT1A2 LTR MaLR 0 374 1 2015 188 30 37 chr3 24693752 24693927 -193343231 + L1ME2 LINE L1 5981 6155 -9 383 297 18 9 chr3 24694739 24694850 -193342308 - MER117 DNA MER1_type -1 196 85 * 1886 183 67 31 chr3 24694847 24695198 -193341960 - MER63B DNA MER1_type -626 436 66 3259 95 44 23 chr3 24695198 24695680 -193341478 - LTR22B LTR ERVK 0 492 1 1886 183 67 31 chr3 24695680 24695749 -193341409 - MER63B DNA MER1_type -996 66 1 324 190 0 35 chr3 24695945 24696003 -193341155 + MER91 DNA MER1_type 141 196 0 837 200 53 6 chr3 24696733 24696903 -193340255 - MER45A DNA AcHobo 0 178 1 180 97 0 0 chr3 24697370 24697401 -193339757 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 484 216 108 0 chr3 24697415 24697517 -193339641 - MER81 DNA DNA -1 113 1 257 178 0 0 chr3 24697803 24697848 -193339310 + MER5B DNA MER1_type 1 45 -133 569 274 0 0 chr3 24698078 24698195 -193338963 - FLAM_A SINE Alu -14 128 12 446 281 111 7 chr3 24699384 24699519 -193337639 - MIR3 SINE MIR -10 198 50 243 261 0 0 chr3 24700686 24700732 -193336426 + L2 LINE L2 3247 3292 -21 258 301 14 0 chr3 24700754 24700827 -193336331 + L2 LINE L2 3240 3313 0 232 337 39 67 chr3 24700879 24701057 -193336101 - L3 LINE CR1 -93 1484 1312 2372 31 41 0 chr3 24701083 24701377 -193335781 - AluY SINE Alu -5 306 1 411 232 12 0 chr3 24701673 24701755 -193335403 + MLT2F LTR ERVL 5 87 -576 2223 108 156 3 chr3 24702217 24702588 -193334570 + MSTA LTR MaLR 1 428 0 2121 243 24 11 chr3 24702659 24703085 -193334073 + MLT2F LTR ERVL 186 620 -43 933 7 50 14 chr3 24703085 24703226 -193333932 + (TCTA)n Simple_repeat Simple_repeat 3 148 0 2121 243 24 11 chr3 24703226 24703264 -193333894 + MLT2F LTR ERVL 620 656 -7 1227 235 48 24 chr3 24703803 24704135 -193333023 + MER102b DNA MER1_type 2 341 0 1254 268 93 15 chr3 24704146 24704556 -193332602 + LTR16C LTR ERVL 1 442 -49 3325 227 3 3 chr3 24704578 24705216 -193331942 + MER82 DNA MER2_type 16 653 0 2179 185 29 14 chr3 24705317 24706345 -193330813 + L1MEc LINE L1 91 1180 -5216 2463 63 0 0 chr3 24706621 24706921 -193330237 + AluY SINE Alu 1 300 -11 1579 177 75 0 chr3 24706927 24707044 -193330114 - L1MA9 LINE L1 -22 6290 6183 231 114 0 0 chr3 24707044 24707079 -193330079 + (TG)n Simple_repeat Simple_repeat 2 36 0 1579 177 75 0 chr3 24707079 24707295 -193329863 - L1MA9 LINE L1 -129 6183 5932 715 197 0 0 chr3 24707518 24707640 -193329518 - FLAM_C SINE Alu -18 125 4 1065 189 41 49 chr3 24707722 24707965 -193329193 - MSTD LTR MaLR 0 396 156 1057 227 54 14 chr3 24708072 24708350 -193328808 - MLT1C LTR MaLR -178 289 1 527 327 63 15 chr3 24708495 24708764 -193328394 - L2 LINE L2 -61 3252 2971 241 314 114 29 chr3 24708769 24708909 -193328249 - L2 LINE L2 -308 3005 2854 2339 273 103 23 chr3 24709463 24710579 -193326579 + L2 LINE L2 2103 3312 -1 193 286 13 39 chr3 24710674 24710751 -193326407 - MIR3 SINE MIR -30 178 104 757 189 25 44 chr3 24712185 24712344 -193324814 + MER5A DNA MER1_type 2 157 -32 572 276 78 58 chr3 24712574 24712817 -193324341 - MIR SINE MIR -11 251 4 428 232 101 0 chr3 24713232 24713331 -193323827 + MER96 DNA MER1_type? 55 163 -12 217 338 13 13 chr3 24713486 24713563 -193323595 + L2 LINE L2 3122 3198 -74 266 276 49 18 chr3 24713727 24713890 -193323268 + (TG)n Simple_repeat Simple_repeat 2 169 0 356 218 34 50 chr3 24714319 24714498 -193322660 + (TG)n Simple_repeat Simple_repeat 2 177 0 236 231 9 56 chr3 24714478 24714586 -193322572 + (TATG)n Simple_repeat Simple_repeat 3 105 0 * 327 233 31 43 chr3 24714532 24714695 -193322463 + (TG)n Simple_repeat Simple_repeat 1 161 0 472 204 9 37 chr3 24714724 24714832 -193322326 - MER81 DNA DNA -1 113 9 626 262 228 5 chr3 24715534 24715766 -193321392 - MIR SINE MIR 0 262 1 341 361 65 34 chr3 24715819 24716109 -193321049 + L1ME2 LINE L1 5654 5956 -206 790 186 40 40 chr3 24716463 24716640 -193320518 - MER5A DNA MER1_type -12 177 1 376 312 159 25 chr3 24716680 24716837 -193320321 - MER5A DNA MER1_type 0 189 12 225 329 128 34 chr3 24716863 24717012 -193320146 - MER5A DNA MER1_type -6 183 21 650 177 88 7 chr3 24717267 24717414 -193319744 + MIR SINE MIR 47 205 -57 184 247 169 22 chr3 24717554 24717643 -193319515 + L3b LINE CR1 1378 1479 -104 * 709 262 14 0 chr3 24717597 24717738 -193319420 - MER5B DNA MER1_type -21 157 15 408 238 322 7 chr3 24718522 24718665 -193318493 + MER5A DNA MER1_type 1 188 -1 288 265 309 0 chr3 24718672 24718808 -193318350 + MER5B DNA MER1_type 1 178 0 531 172 2 2 chr3 24719084 24719185 -193317973 + MER5A DNA MER1_type 9 98 -80 365 266 6 79 chr3 24720784 24720961 -193316197 + L2 LINE L2 2883 3046 -226 884 249 151 53 chr3 24721027 24721464 -193315694 - LTR16C LTR ERVL 0 491 12 256 156 22 0 chr3 24721501 24721546 -193315612 + L2 LINE L2 3262 3307 -6 476 32 16 0 chr3 24722126 24722188 -193314970 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 368 287 21 0 chr3 24722200 24722296 -193314862 + MIR SINE MIR 67 165 -43 5044 156 29 9 chr3 24722350 24723358 -193313800 + L1MB7 LINE L1 5156 6183 -1 2086 96 3 7 chr3 24723372 24723663 -193313495 + AluSg SINE Alu 1 290 -20 1000 275 110 43 chr3 24723663 24724125 -193313033 - MLT1H LTR MaLR -42 507 15 234 264 8 74 chr3 24724128 24724249 -193312909 + MIR SINE MIR 149 261 -1 320 236 55 36 chr3 24724315 24724425 -193312733 - MIR3 SINE MIR -9 199 88 615 238 35 17 chr3 24724679 24724851 -193312307 + Charlie8 DNA MER1_type 8 182 -2235 250 254 70 0 chr3 24725683 24725754 -193311404 - MER91C DNA MER1_type -35 105 30 286 266 266 8 chr3 24725930 24726054 -193311104 - MIR SINE MIR 0 262 107 294 214 167 12 chr3 24726087 24726171 -193310987 - MIR SINE MIR 0 262 166 186 180 0 80 chr3 24726142 24726192 -193310966 - MIR3 SINE MIR -43 165 120 * 246 123 175 0 chr3 24726316 24726373 -193310785 - MIR SINE MIR -147 115 49 2556 42 0 0 chr3 24726746 24727056 -193310102 + AluY SINE Alu 1 310 -1 548 244 81 47 chr3 24727757 24727929 -193309229 - MIR SINE MIR -22 240 63 238 258 135 11 chr3 24728122 24728211 -193308947 - MIR SINE MIR -12 250 151 474 353 59 23 chr3 24728351 24728572 -193308586 - MIR SINE MIR -29 233 5 458 250 112 0 chr3 24729352 24729504 -193307654 + L1MD3 LINE L1 7816 7984 -11 464 303 51 11 chr3 24730490 24730665 -193306493 + MIR SINE MIR 62 243 -19 1338 83 19 10 chr3 24730708 24730913 -193306245 - L1P LINE L1 -777 5369 5163 3566 92 11 0 chr3 24730913 24731390 -193305768 + L1PA10 LINE L1 5686 6167 -1 237 297 54 27 chr3 24731412 24731486 -193305672 - L2 LINE L2 -34 3279 3204 1011 132 52 11 chr3 24731645 24731819 -193305339 + MER5A DNA MER1_type 1 181 -8 189 146 0 83 chr3 24731821 24731869 -193305289 - MIR SINE MIR -93 169 126 373 281 25 75 chr3 24732403 24732602 -193304556 - LTR16A1 LTR ERVL 0 457 269 309 287 49 35 chr3 24732747 24732890 -193304268 - MIR3 SINE MIR -45 163 19 984 144 55 11 chr3 24732963 24733144 -193304014 - MER5A DNA MER1_type 0 189 1 253 289 36 12 chr3 24733889 24733972 -193303186 - MIR SINE MIR -71 191 107 201 276 35 0 chr3 24734277 24734335 -193302823 - L3b LINE CR1 -183 1400 1341 623 265 71 60 chr3 24734431 24734714 -193302444 - MLT1J LTR MaLR -2 509 224 382 298 32 32 chr3 24735368 24735492 -193301666 - L2 LINE L2 -9 3263 3140 183 162 0 0 chr3 24735585 24735622 -193301536 + (CA)n Simple_repeat Simple_repeat 2 38 0 199 364 75 36 chr3 24735622 24735902 -193301256 + L2 LINE L2 1666 1956 -1358 1151 208 96 96 chr3 24735904 24736338 -193300820 - LTR16A1 LTR ERVL 0 457 21 2145 127 40 30 chr3 24736338 24736709 -193300449 - THE1C LTR MaLR 0 375 1 1151 208 96 96 chr3 24736709 24736731 -193300427 - LTR16A1 LTR ERVL -435 22 1 321 274 95 0 chr3 24737365 24737449 -193299709 - MIR3 SINE MIR -6 202 111 2454 58 0 0 chr3 24737560 24737870 -193299288 - AluY SINE Alu -1 310 1 2281 94 0 0 chr3 24738740 24739037 -193298121 + AluSx SINE Alu 1 297 -15 323 375 7 7 chr3 24739165 24739309 -193297849 - MIR3 SINE MIR -2 206 63 288 285 169 26 chr3 24739346 24739563 -193297595 - MIR SINE MIR -3 259 16 277 198 19 0 chr3 24739827 24739933 -193297225 + CT-rich Low_complexity Low_complexity 2 109 0 414 0 0 0 chr3 24739933 24739979 -193297179 + (CA)n Simple_repeat Simple_repeat 1 46 0 292 223 48 68 chr3 24740587 24740690 -193296468 - MER91B DNA MER1_type 0 190 90 463 352 0 0 chr3 24740708 24740836 -193296322 - MER91B DNA MER1_type -61 129 2 335 299 0 0 chr3 24741263 24741370 -193295788 + (TG)n Simple_repeat Simple_repeat 2 108 0 1556 165 14 20 chr3 24742484 24742781 -193294377 + AluJb SINE Alu 1 295 -17 2285 80 3 3 chr3 24742781 24743092 -193294066 + AluY SINE Alu 1 311 0 378 0 0 0 chr3 24743891 24743933 -193293225 + (A)n Simple_repeat Simple_repeat 1 42 0 2433 57 7 0 chr3 24744738 24745037 -193292121 - AluSc SINE Alu -8 301 1 25 0 0 0 chr3 24745238 24745263 -193291895 + AT_rich Low_complexity Low_complexity 1 25 0 366 42 0 0 chr3 24745513 24745561 -193291597 + (TG)n Simple_repeat Simple_repeat 2 49 0 532 224 218 13 chr3 24745679 24745835 -193291323 - MIR SINE MIR -28 234 47 338 286 0 0 chr3 24746047 24746131 -193291027 - LTR37A LTR ERV1 -335 91 8 261 250 0 0 chr3 24746671 24746779 -193290379 + CT-rich Low_complexity Low_complexity 1 108 0 269 267 0 0 chr3 24747476 24747536 -193289622 + L2 LINE L2 3208 3267 -5 699 282 41 5 chr3 24747540 24747735 -193289423 - MIR SINE MIR -3 259 58 679 226 116 6 chr3 24747744 24747925 -193289233 - MIR SINE MIR -30 232 32 183 200 100 20 chr3 24748592 24748642 -193288516 - MER5B DNA MER1_type -55 123 70 217 288 123 5 chr3 24748932 24749041 -193288117 - MIR3 SINE MIR -117 145 15 657 176 42 102 chr3 24749162 24749326 -193287832 + MER3 DNA MER1_type 6 157 -52 1394 149 73 44 chr3 24749326 24749637 -193287521 + AluJo SINE Alu 1 319 0 657 176 42 102 chr3 24749637 24749687 -193287471 + MER3 DNA MER1_type 157 208 -1 180 152 91 0 chr3 24750109 24750142 -193287016 - L3 LINE CR1 -10 1567 1532 * 320 178 11 111 chr3 24750114 24750204 -193286954 - MIR3 SINE MIR -22 186 106 276 229 92 46 chr3 24751420 24751551 -193285607 + MLT1I LTR MaLR 1 137 -272 351 239 62 92 chr3 24751679 24751809 -193285349 + MLT1H LTR MaLR 424 549 0 706 265 46 53 chr3 24752013 24752545 -193284613 + MLT2F LTR ERVL 13 655 -8 387 206 16 87 chr3 24752650 24752776 -193284382 - MIR SINE MIR -6 256 140 1487 274 55 22 chr3 24753450 24753903 -193283255 + MLT2E LTR ERVL 1 468 -160 2168 73 14 3 chr3 24754567 24754855 -193282303 + AluY SINE Alu 1 291 -20 707 175 96 24 chr3 24754901 24755067 -193282091 + MER5B DNA MER1_type 1 178 0 459 228 73 32 chr3 24755067 24755190 -193281968 - MER5A DNA MER1_type -5 184 57 1307 237 122 10 chr3 24755216 24755625 -193281533 + MSTB2 LTR MaLR 1 455 -2 285 316 211 5 chr3 24755973 24756163 -193280995 - MIR SINE MIR -21 241 13 210 330 155 0 chr3 24756781 24756884 -193280274 - MIR3 SINE MIR -45 163 45 1087 186 144 23 chr3 24756973 24757237 -193279921 - AluJo SINE Alu -5 297 2 24 0 0 0 chr3 24757987 24758011 -193279147 + AT_rich Low_complexity Low_complexity 1 24 0 661 288 51 19 chr3 24759792 24760007 -193277151 + L2 LINE L2 113 334 -2980 965 194 50 0 chr3 24760007 24760187 -193276971 + MER20 DNA MER1_type 24 212 -7 301 270 52 17 chr3 24760199 24760314 -193276844 + L2 LINE L2 372 490 -2824 538 258 171 33 chr3 24760315 24760590 -193276568 + L2 LINE L2 833 1145 -2169 3515 253 125 26 chr3 24760610 24761936 -193275222 + L2 LINE L2 1683 3132 -181 21 0 0 0 chr3 24762386 24762407 -193274751 + AT_rich Low_complexity Low_complexity 1 21 0 293 255 75 28 chr3 24764202 24764308 -193272850 - MIR SINE MIR -88 174 64 230 235 94 35 chr3 24764626 24764711 -193272447 + MIR3 SINE MIR 105 194 -14 1790 95 8 4 chr3 24764861 24765113 -193272045 + AluSg SINE Alu 54 306 -4 1020 279 137 29 chr3 24765584 24766350 -193270808 + L2 LINE L2 2455 3308 -5 27 0 0 0 chr3 24766639 24766666 -193270492 + AT_rich Low_complexity Low_complexity 1 27 0 2285 100 0 3 chr3 24766797 24767107 -193270051 - AluSq SINE Alu -2 311 3 557 244 97 17 chr3 24768018 24768194 -193268964 + L2 LINE L2 3122 3311 -2 1117 236 62 18 chr3 24768537 24768954 -193268204 - L1ME3A LINE L1 -2 6160 5701 2094 119 0 0 chr3 24769688 24769982 -193267176 - AluSx SINE Alu -18 294 1 587 271 197 5 chr3 24771392 24771580 -193265578 - MER58A DNA MER1_type 0 224 1 1737 166 16 29 chr3 24771853 24772166 -193264992 - AluJo SINE Alu -3 309 1 22 0 0 0 chr3 24772443 24772465 -193264693 + AT_rich Low_complexity Low_complexity 1 22 0 396 198 35 0 chr3 24772560 24772646 -193264512 + MER41E LTR ERV1 313 401 -111 23 33 0 0 chr3 24772685 24772715 -193264443 + AT_rich Low_complexity Low_complexity 1 30 0 224 245 91 39 chr3 24773105 24773239 -193263919 - MIR SINE MIR -29 179 33 1759 160 14 11 chr3 24773766 24774047 -193263111 + AluJo SINE Alu 1 282 -30 198 0 0 0 chr3 24774052 24774074 -193263084 + (GAAAA)n Simple_repeat Simple_repeat 2 23 0 710 138 0 0 chr3 24774526 24774620 -193262538 + AluSg/x SINE Alu 197 290 -20 2248 95 6 16 chr3 24775387 24775702 -193261456 - AluSq SINE Alu -1 312 1 280 279 15 0 chr3 24776617 24776685 -193260473 - L2 LINE L2 -37 3276 3208 249 241 27 125 chr3 24776860 24776949 -193260209 - MIR SINE MIR -73 189 112 587 234 55 8 chr3 24776949 24777077 -193260081 - MER94 DNA DNA 0 134 1 249 241 27 125 chr3 24777077 24777099 -193260059 - MIR SINE MIR -150 112 89 1185 254 98 15 chr3 24778012 24778421 -193258737 - L2 LINE L2 -1146 2168 1726 486 238 273 6 chr3 24778465 24778637 -193258521 + MIR SINE MIR 45 262 0 292 230 168 6 chr3 24778658 24778819 -193258339 - L2 LINE L2 -1619 1695 1509 267 279 35 23 chr3 24778984 24779070 -193258088 + MIR3 SINE MIR 111 197 -11 1626 145 4 0 chr3 24779820 24780055 -193257103 + MER46A DNA MER2_type 1 236 0 1223 124 143 81 chr3 24780367 24780626 -193256532 - AluJb SINE Alu -5 307 33 258 222 19 0 chr3 24780922 24780976 -193256182 - L2 LINE L2 -1 3271 3217 207 0 0 0 chr3 24781295 24781318 -193255840 + (T)n Simple_repeat Simple_repeat 1 23 0 253 245 170 0 chr3 24781673 24781767 -193255391 + L2 LINE L2 3161 3270 -2 495 289 84 47 chr3 24781837 24782027 -193255131 + MIR SINE MIR 36 232 -30 1701 161 119 0 chr3 24782786 24783097 -193254061 - MER7A DNA MER2_type 0 346 1 1006 178 114 25 chr3 24783103 24783339 -193253819 - MIR SINE MIR -4 258 2 699 224 106 25 chr3 24784132 24784377 -193252781 - MER5C DNA MER1_type -1 323 59 202 265 0 88 chr3 24784493 24784561 -193252597 + L2 LINE L2 3205 3266 -6 219 340 52 15 chr3 24787444 24787577 -193249581 + MIR SINE MIR 31 149 -59 421 303 62 100 chr3 24788171 24788491 -193248667 + L2 LINE L2 2965 3272 0 6847 194 56 46 chr3 24789742 24790667 -193246491 - L1MB8 LINE L1 -14 6164 5250 2185 106 3 17 chr3 24790667 24790969 -193246189 - AluSx SINE Alu -14 298 1 6847 194 56 46 chr3 24790969 24792672 -193244486 - L1MB8 LINE L1 -928 5250 3505 2208 107 0 19 chr3 24792672 24792982 -193244176 - AluSq SINE Alu -9 304 1 6847 194 56 46 chr3 24792982 24793277 -193243881 - L1MB8 LINE L1 -2673 3505 3215 22 0 0 0 chr3 24793709 24793731 -193243427 + AT_rich Low_complexity Low_complexity 1 22 0 203 222 0 32 chr3 24794119 24794182 -193242976 + T-rich Low_complexity Low_complexity 3 63 0 3308 219 41 39 chr3 24794782 24796425 -193240733 + L1ME1 LINE L1 4474 6116 -50 229 329 114 25 chr3 24798423 24798581 -193238577 - MIR SINE MIR -71 191 20 1369 214 154 3 chr3 24798591 24799105 -193238053 - MER20B DNA MER1_type -1 782 136 409 179 0 0 chr3 24799142 24799209 -193237949 + MER63 DNA MER1_type 683 749 -313 636 216 15 8 chr3 24799285 24799419 -193237739 - MER20B DNA MER1_type -642 141 7 194 286 18 0 chr3 24802882 24802938 -193234220 + L2 LINE L2 3256 3312 -1 765 212 0 120 chr3 24804101 24804351 -193232807 + MIR SINE MIR 6 225 -37 211 247 321 0 chr3 24804436 24804517 -193232641 + L2 LINE L2 3197 3303 -10 563 244 73 69 chr3 24804681 24804955 -193232203 - L1MC5 LINE L1 -54 7907 7633 713 237 47 19 chr3 24805068 24805279 -193231879 - L1MC5 LINE L1 -474 7487 7271 270 116 0 0 chr3 24805387 24805430 -193231728 - L1MC4 LINE L1 -791 7251 7209 * 699 218 83 49 chr3 24805411 24805737 -193231421 - L1MC5 LINE L1 -733 7228 6892 1116 230 63 37 chr3 24805831 24806179 -193230979 - L2 LINE L2 -1258 2056 1700 730 137 85 92 chr3 24806193 24806380 -193230778 - L1MD3 LINE L1 -11 7984 7581 291 265 44 0 chr3 24806479 24806547 -193230611 - L2 LINE L2 -18 3254 3184 24 32 0 0 chr3 24807418 24807449 -193229709 + AT_rich Low_complexity Low_complexity 1 31 0 619 265 179 0 chr3 24807625 24807859 -193229299 - L1ME LINE L1 -335 5786 5511 357 316 111 32 chr3 24808130 24808320 -193228838 + MIR3 SINE MIR 2 206 -2 320 290 101 24 chr3 24808358 24808565 -193228593 + L3b LINE CR1 1219 1441 -142 2472 91 0 0 chr3 24809164 24809471 -193227687 + AluSp SINE Alu 1 307 -6 30 0 0 0 chr3 24809631 24809661 -193227497 + AT_rich Low_complexity Low_complexity 1 30 0 1735 96 18 0 chr3 24809661 24809880 -193227278 - AluSg/x SINE Alu -22 290 68 250 281 251 22 chr3 24810067 24810334 -193226824 + L2 LINE L2 2479 2806 -508 183 200 0 0 chr3 24810338 24810368 -193226790 + L2 LINE L2 3236 3265 -48 317 291 10 10 chr3 24811404 24811507 -193225651 - MLT1I LTR MaLR -4 405 303 1742 155 31 14 chr3 24811507 24811798 -193225360 - AluJo SINE Alu -16 296 1 270 204 112 41 chr3 24811838 24811936 -193225222 - MLT1J2 LTR MaLR -279 171 67 229 139 28 0 chr3 24811949 24811985 -193225173 - MLT1L LTR MaLR -578 37 1 441 281 111 23 chr3 24812023 24812240 -193224918 - MIR SINE MIR -20 242 7 723 208 25 0 chr3 24812861 24813020 -193224138 + MER5B DNA MER1_type 1 163 -15 2298 97 3 0 chr3 24813572 24813870 -193223288 - AluSx SINE Alu -13 299 1 546 220 239 8 chr3 24816233 24816501 -193220657 + LTR16A LTR ERVL 120 449 -1 365 250 129 0 chr3 24817809 24817925 -193219233 + MIR SINE MIR 49 179 -83 358 192 77 0 chr3 24817918 24817996 -193219162 - MER91C DNA MER1_type -30 110 27 * 210 184 0 0 chr3 24818893 24818931 -193218227 - L2 LINE L2 0 3313 3276 383 316 44 44 chr3 24819192 24819417 -193217741 - L2 LINE L2 -436 2878 2654 4885 133 43 23 chr3 24822602 24823102 -193214056 - L1MA7 LINE L1 0 6291 5765 351 0 0 0 chr3 24823102 24823141 -193214017 + (TG)n Simple_repeat Simple_repeat 2 40 0 4885 133 43 23 chr3 24823141 24823499 -193213659 - L1MA7 LINE L1 -526 5765 5416 252 343 96 12 chr3 24823573 24823739 -193213419 - MIR SINE MIR -6 256 77 397 299 24 16 chr3 24823956 24824083 -193213075 - MIR3 SINE MIR -78 130 3 516 243 50 29 chr3 24824426 24824566 -193212592 + MIR SINE MIR 29 171 -91 524 214 28 93 chr3 24824749 24824931 -193212227 + MIR SINE MIR 76 245 -17 315 218 11 58 chr3 24825130 24825217 -193211941 + MIR SINE MIR 180 262 0 2316 74 0 10 chr3 24825933 24826242 -193210916 + AluY SINE Alu 1 306 -5 212 248 56 106 chr3 24826534 24826695 -193210463 - L2 LINE L2 -86 3186 3034 1013 144 22 11 chr3 24827058 24827238 -193209920 + MER5A DNA MER1_type 5 186 -3 21 0 0 0 chr3 24827351 24827372 -193209786 + AT_rich Low_complexity Low_complexity 1 21 0 279 315 19 19 chr3 24827406 24827426 -193209732 + GA-rich Low_complexity Low_complexity 4 23 -88 1504 189 120 17 chr3 24827426 24827785 -193209373 + MSTD LTR MaLR 1 396 0 279 315 19 19 chr3 24827785 24827872 -193209286 + GA-rich Low_complexity Low_complexity 22 111 0 785 303 97 42 chr3 24829722 24830178 -193206980 - HAL1 LINE L1 -182 2325 1845 1754 265 87 25 chr3 24830212 24830933 -193206225 - HAL1 LINE L1 -762 1745 980 304 229 35 123 chr3 24831157 24831291 -193205867 - HAL1 LINE L1 -2291 216 72 186 43 0 0 chr3 24831291 24831314 -193205844 + (CCTA)n Simple_repeat Simple_repeat 4 26 0 2903 208 74 7 chr3 24831314 24831925 -193205233 + MER82 DNA MER2_type 2 653 0 304 229 35 123 chr3 24831925 24832016 -193205142 - HAL1 LINE L1 -2433 74 10 1602 247 65 41 chr3 24832185 24832339 -193204819 + L1MC/D LINE L1 5270 5419 -2389 2311 84 0 0 chr3 24832339 24832649 -193204509 + AluY SINE Alu 1 310 -1 1602 247 65 41 chr3 24832649 24833005 -193204153 + L1MC/D LINE L1 5419 5792 -2016 204 269 81 111 chr3 24833040 24833155 -193204003 - L2 LINE L2 -906 2408 2291 2543 169 61 4 chr3 24833155 24833633 -193203525 + MLT1D LTR MaLR 1 505 0 204 269 81 111 chr3 24833633 24833814 -193203344 - L2 LINE L2 -1023 2291 2121 2418 81 39 39 chr3 24833868 24834250 -193202908 + L1PA11 LINE L1 5792 6173 -1 23 0 0 0 chr3 24835113 24835136 -193202022 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr3 24835306 24835334 -193201824 + AT_rich Low_complexity Low_complexity 1 28 0 1198 225 25 7 chr3 24835344 24835629 -193201529 + MLT1H LTR MaLR 9 298 -251 322 213 0 0 chr3 24835766 24835827 -193201331 + MLT1H LTR MaLR 486 546 -3 2396 72 0 0 chr3 24835917 24836222 -193200936 + AluSc SINE Alu 1 305 -4 380 301 135 6 chr3 24838152 24838308 -193198850 + L2 LINE L2 3138 3313 0 930 266 137 49 chr3 24838582 24839048 -193198110 + MLT1H LTR MaLR 41 547 -2 3834 137 36 15 chr3 24839275 24840016 -193197142 + L1MC1 LINE L1 5157 6324 -9 415 137 27 0 chr3 24840016 24840083 -193197075 + L1MC1 LINE L1 6254 6328 -5 275 287 108 44 chr3 24840124 24840481 -193196677 + L1ME4a LINE L1 5709 6094 -27 3044 148 49 12 chr3 24840481 24841057 -193196101 - L1MB8 LINE L1 0 6178 5582 275 287 108 44 chr3 24841057 24841086 -193196072 + L1ME4a LINE L1 6094 6120 -1 1279 164 0 22 chr3 24841359 24841590 -193195568 - AluJb SINE Alu -74 238 13 260 203 172 0 chr3 24841597 24841661 -193195497 - MER5B DNA MER1_type -114 75 1 480 329 85 16 chr3 24841801 24842047 -193195111 - L3 LINE CR1 -252 1325 1063 352 293 43 57 chr3 24842557 24842697 -193194461 - L3 LINE CR1 -666 911 774 1236 193 54 51 chr3 24843439 24843722 -193193436 + MLT1E2 LTR MaLR 287 573 -53 333 0 0 0 chr3 24843722 24843759 -193193399 + (TG)n Simple_repeat Simple_repeat 2 38 0 1236 193 54 51 chr3 24843759 24843771 -193193387 + MLT1E2 LTR MaLR 573 583 -43 2051 152 68 86 chr3 24843870 24844338 -193192820 + MLT2B1 LTR ERVL 61 520 0 275 184 0 0 chr3 24844694 24844743 -193192415 + L2 LINE L2 3261 3309 -4 904 288 71 44 chr3 24845066 24845473 -193191685 + MLT1L LTR MaLR 197 614 -1 972 219 45 28 chr3 24845720 24846024 -193191134 - MLT1D LTR MaLR 0 485 200 707 254 82 45 chr3 24846276 24846564 -193190594 - LTR16A1 LTR ERVL -2 455 175 22 0 0 0 chr3 24846790 24846812 -193190346 + AT_rich Low_complexity Low_complexity 1 22 0 1924 189 56 8 chr3 24848176 24848568 -193188590 - MLT2D LTR ERVL -3 411 1 507 294 54 21 chr3 24848570 24848878 -193188280 - L1MC4a LINE L1 -364 5798 5568 612 345 185 18 chr3 24849249 24849957 -193187201 + L3 LINE CR1 92 917 -660 259 371 11 0 chr3 24850624 24850713 -193186445 + L3 LINE CR1 1073 1162 -415 495 283 64 44 chr3 24851116 24851367 -193185791 - MIR SINE MIR -6 256 1 906 204 21 37 chr3 24851904 24852000 -193185158 + MER5A DNA MER1_type 1 94 -95 1548 202 30 48 chr3 24852000 24852396 -193184762 + MLT1B LTR MaLR 2 390 0 906 204 21 37 chr3 24852396 24852490 -193184668 + MER5A DNA MER1_type 94 188 -1 183 175 0 111 chr3 24852670 24852733 -193184425 - L2 LINE L2 -212 3060 3005 4729 173 6 28 chr3 24852861 24853717 -193183441 - MLT1A1-int LTR MaLR -898 837 1 1112 229 29 81 chr3 24853717 24854062 -193183096 - MLT1A1 LTR MaLR 0 365 39 943 189 27 27 chr3 24854085 24854270 -193182888 - MER5A DNA MER1_type -3 186 2 2120 95 3 0 chr3 24855268 24855595 -193181563 + AluSx SINE Alu 1 328 0 626 231 30 0 chr3 24855849 24855983 -193181175 + MIR SINE MIR 82 219 -43 201 74 0 0 chr3 24856865 24856892 -193180266 + (T)n Simple_repeat Simple_repeat 1 27 0 1980 124 7 3 chr3 24857185 24857491 -193179667 + AluSx SINE Alu 1 307 -5 1605 174 33 105 chr3 24857757 24858177 -193178981 + MLT1B LTR MaLR 1 390 0 304 274 130 43 chr3 24858339 24858547 -193178611 + L1ME4a LINE L1 5114 5339 -807 1531 153 94 0 chr3 24858605 24858880 -193178278 - AluJb SINE Alu -11 301 1 619 311 114 21 chr3 24858885 24859455 -193177703 + L1ME4a LINE L1 5445 6067 -54 406 306 75 35 chr3 24859534 24859707 -193177451 + L3 LINE CR1 1297 1476 -101 592 287 196 23 chr3 24859708 24860105 -193177053 - L2 LINE L2 -1 3312 2847 245 280 132 44 chr3 24860139 24860321 -193176837 + MLT1I LTR MaLR 91 288 -121 420 206 82 82 chr3 24860330 24860476 -193176682 + MLT1H LTR MaLR 404 549 0 219 287 69 35 chr3 24862840 24862927 -193174231 - L2 LINE L2 -23 3290 3201 25 0 0 0 chr3 24863065 24863090 -193174068 + AT_rich Low_complexity Low_complexity 1 25 0 321 262 0 12 chr3 24863121 24863205 -193173953 + L1ME3A LINE L1 5781 5863 -307 760 255 43 4 chr3 24863212 24863443 -193173715 + L1ME3A LINE L1 5922 6161 -9 26 0 0 0 chr3 24863849 24863875 -193173283 + AT_rich Low_complexity Low_complexity 1 26 0 287 237 26 0 chr3 24864135 24864211 -193172947 + L1MC5 LINE L1 7320 7397 -564 266 260 33 40 chr3 24864421 24864571 -193172587 + (CAGGG)n Simple_repeat Simple_repeat 1 149 0 497 277 63 0 chr3 24865057 24865216 -193171942 + MIR SINE MIR 73 241 -21 2192 60 7 30 chr3 24866799 24867099 -193170059 + AluY SINE Alu 1 293 -18 896 218 24 24 chr3 24867135 24867341 -193169817 - MER3 DNA MER1_type -3 206 1 347 236 8 65 chr3 24869778 24869901 -193167257 + MER113 DNA MER1_type? 92 207 -314 970 239 94 20 chr3 24870498 24870795 -193166363 - LTR16C LTR ERVL -8 483 165 208 233 14 68 chr3 24872587 24872660 -193164498 - MIR SINE MIR -144 118 50 275 292 21 10 chr3 24873809 24873905 -193163253 + MIR SINE MIR 126 222 -40 234 248 154 17 chr3 24874605 24874722 -193162436 - MIR SINE MIR -21 241 109 219 232 120 56 chr3 24875606 24875731 -193161427 + MIR3 SINE MIR 11 143 -65 439 267 129 56 chr3 24877774 24878006 -193159152 - MIR SINE MIR 0 262 14 302 326 78 0 chr3 24878524 24878653 -193158505 + MIR SINE MIR 6 144 -118 1299 128 5 0 chr3 24878975 24879163 -193157995 + MER5A DNA MER1_type 1 189 0 489 221 88 0 chr3 24879165 24879278 -193157880 + L2 LINE L2 3191 3313 0 276 219 126 17 chr3 24879620 24879739 -193157419 + L1ME4a LINE L1 5987 6118 -3 211 281 8 86 chr3 24880023 24880151 -193157007 - L2 LINE L2 -258 3014 2897 438 266 18 0 chr3 24880537 24880646 -193156512 - L1ME LINE L1 -454 5667 5557 292 303 41 14 chr3 24880888 24881033 -193156125 + L2 LINE L2 2130 2278 -1036 24 0 0 0 chr3 24881952 24881976 -193155182 + AT_rich Low_complexity Low_complexity 1 24 0 2286 143 60 18 chr3 24882309 24882708 -193154450 + MLT2C2 LTR ERVL 1 416 -48 1215 159 10 5 chr3 24883113 24883321 -193153837 - MER3 DNA MER1_type 0 209 1 325 294 20 2 chr3 24883882 24884007 -193153151 + MIR SINE MIR 30 154 -62 1064 221 33 8 chr3 24884715 24884959 -193152199 - MIR SINE MIR -5 257 8 199 304 113 26 chr3 24885003 24885197 -193151961 - L2 LINE L2 -481 2833 2623 361 209 15 0 chr3 24885372 24885439 -193151719 + MER94 DNA DNA 64 131 -3 369 0 0 0 chr3 24885978 24886019 -193151139 + (TC)n Simple_repeat Simple_repeat 2 42 0 454 300 0 0 chr3 24886660 24886780 -193150378 + L2 LINE L2 3194 3313 0 209 294 59 12 chr3 24886904 24886989 -193150169 - MIR3 SINE MIR -32 176 88 1354 221 58 29 chr3 24888108 24888628 -193148530 + MLT1G1 LTR MaLR 1 542 0 237 336 9 0 chr3 24889453 24889560 -193147598 + (CCA)n Simple_repeat Simple_repeat 3 110 0 22 35 0 0 chr3 24889693 24889722 -193147436 + AT_rich Low_complexity Low_complexity 1 29 0 225 245 0 0 chr3 24890201 24890250 -193146908 - MIR3 SINE MIR -2 206 158 243 0 0 0 chr3 24890265 24890292 -193146866 + (T)n Simple_repeat Simple_repeat 1 27 0 207 182 39 0 chr3 24890957 24891034 -193146124 + (TA)n Simple_repeat Simple_repeat 1 80 0 225 87 130 0 chr3 24891039 24891085 -193146073 - L1MC4 LINE L1 -1340 6702 6651 181 167 0 0 chr3 24891388 24891424 -193145734 - L2 LINE L2 -2 3270 3235 180 0 0 0 chr3 24891448 24891468 -193145690 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 184 319 35 86 chr3 24891475 24891707 -193145451 - L2 LINE L2 -126 3187 2968 2278 98 0 10 chr3 24892041 24892348 -193144810 - AluY SINE Alu -7 304 1 1763 170 3 38 chr3 24892474 24892791 -193144367 + AluJo SINE Alu 1 306 -6 911 215 196 32 chr3 24892799 24893115 -193144043 + L1ME3A LINE L1 5796 6163 -7 21 0 0 0 chr3 24893473 24893494 -193143664 + AT_rich Low_complexity Low_complexity 1 21 0 621 231 178 0 chr3 24893756 24893837 -193143321 + Charlie5 DNA MER1_type 2 67 -2557 1610 138 4 28 chr3 24893837 24894090 -193143068 - AluJo SINE Alu -17 295 49 621 231 178 0 chr3 24894090 24894177 -193142981 + Charlie5 DNA MER1_type 67 200 -2424 313 138 138 0 chr3 24894175 24894233 -193142925 + Charlie5 DNA MER1_type 2352 2417 -195 * 240 194 0 0 chr3 24894230 24894266 -193142892 - AluJo SINE Alu -250 52 17 * 576 174 78 50 chr3 24894255 24894473 -193142685 + Charlie5 DNA MER1_type 2382 2605 -7 22 35 0 0 chr3 24894658 24894687 -193142471 + AT_rich Low_complexity Low_complexity 1 29 0 424 167 0 0 chr3 24894687 24894753 -193142405 - AluJ/FRAM SINE Alu -21 291 226 2453 101 0 0 chr3 24895170 24895476 -193141682 + AluSq SINE Alu 1 306 -7 2274 150 95 35 chr3 24895496 24895989 -193141169 + L1MA9 LINE L1 5752 6274 -38 224 122 24 0 chr3 24896162 24896203 -193140955 + CT-rich Low_complexity Low_complexity 1 42 0 237 198 27 117 chr3 24896265 24896350 -193140808 + MER103 DNA DNA 20 94 -72 2532 55 7 7 chr3 24896350 24896659 -193140499 + AluSg SINE Alu 1 309 -1 237 198 27 117 chr3 24896659 24896684 -193140474 + MER103 DNA DNA 94 120 -46 24 0 0 0 chr3 24897646 24897670 -193139488 + AT_rich Low_complexity Low_complexity 1 24 0 217 281 255 42 chr3 24897869 24898637 -193138521 + L2 LINE L2 1977 2908 -406 1559 153 36 68 chr3 24899417 24899725 -193137433 + AluJb SINE Alu 3 300 -12 297 351 87 5 chr3 24899788 24899996 -193137162 + L2 LINE L2 1832 2056 -1258 284 198 143 11 chr3 24900008 24900099 -193137059 + MER5C DNA MER1_type 222 324 0 289 290 21 0 chr3 24900215 24900308 -193136850 + Charlie8 DNA MER1_type 157 251 -2166 503 258 92 37 chr3 24901627 24901844 -193135314 + MIR SINE MIR 3 231 -31 541 80 16 59 chr3 24901960 24902147 -193135011 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 * 584 44 116 0 chr3 24902136 24902456 -193134702 + (TA)n Simple_repeat Simple_repeat 1 357 0 503 181 169 46 chr3 24904663 24904708 -193132450 - LTR37B LTR ERV1 -2 466 428 874 171 127 0 chr3 24904708 24904889 -193132269 - MER6B DNA MER2_type -3 207 4 503 181 169 46 chr3 24904889 24905080 -193132078 - LTR37B LTR ERV1 -40 428 201 1731 163 3 39 chr3 24905236 24905542 -193131616 - AluJo SINE Alu -17 295 1 190 221 91 13 chr3 24906377 24906454 -193130704 + L2 LINE L2 3221 3303 -10 184 224 53 40 chr3 24906674 24906750 -193130408 + L2 LINE L2 3221 3297 -16 1128 105 13 0 chr3 24907583 24907735 -193129423 - AluSq SINE Alu -26 287 134 2374 80 0 7 chr3 24907735 24908035 -193129123 - AluSx SINE Alu -12 300 3 24 0 0 0 chr3 24908041 24908065 -193129093 + AT_rich Low_complexity Low_complexity 1 24 0 423 0 0 0 chr3 24908263 24908310 -193128848 + (CA)n Simple_repeat Simple_repeat 2 48 0 24 0 0 0 chr3 24908559 24908583 -193128575 + AT_rich Low_complexity Low_complexity 1 24 0 1998 245 116 8 chr3 24910623 24911157 -193126001 + MLT1E LTR MaLR 1 592 -1 464 243 14 14 chr3 24911909 24912053 -193125105 + MIR SINE MIR 76 219 -43 1644 247 99 99 chr3 24912157 24912375 -193124783 - L2 LINE L2 0 3313 3096 2271 123 10 0 chr3 24912375 24912684 -193124474 + AluSx SINE Alu 1 312 0 1644 247 99 99 chr3 24912684 24913447 -193123711 - L2 LINE L2 -217 3096 2285 227 200 71 29 chr3 24913447 24913517 -193123641 - L1MC4 LINE L1 -1322 6720 6648 1644 247 99 99 chr3 24913517 24913821 -193123337 - L2 LINE L2 -1028 2285 1982 1207 178 54 8 chr3 24914421 24914662 -193122496 + L1MD3 LINE L1 7721 7972 -23 920 93 0 0 chr3 24914918 24915047 -193122111 - L1MB4 LINE L1 0 6180 6052 1799 139 60 30 chr3 24915048 24915350 -193121808 - AluJb SINE Alu -1 311 1 1510 143 9 0 chr3 24915834 24916057 -193121101 - AluJb SINE Alu -87 225 1 727 183 41 71 chr3 24918666 24918835 -193118323 + MER3 DNA MER1_type 27 190 -19 596 180 152 0 chr3 24918863 24919017 -193118141 - MER5A DNA MER1_type -5 184 4 257 226 29 29 chr3 24919127 24919229 -193117929 - Charlie7 DNA MER1_type -99 2513 2412 955 262 151 66 chr3 24919241 24919397 -193117761 - Charlie7 DNA MER1_type -1919 693 552 2433 86 0 3 chr3 24919397 24919700 -193117458 - AluSc SINE Alu -7 302 1 955 262 151 66 chr3 24919700 24920105 -193117053 - Charlie7 DNA MER1_type -2060 552 84 2449 71 0 7 chr3 24920399 24920694 -193116464 + AluSc SINE Alu 1 293 -16 340 322 69 39 chr3 24920702 24920935 -193116223 + L1M4 LINE L1 4724 4963 -1183 2390 81 0 7 chr3 24920935 24921231 -193115927 + AluY SINE Alu 1 294 -17 915 202 67 19 chr3 24921263 24921471 -193115687 + MER20 DNA MER1_type 1 218 -1 345 24 0 0 chr3 24924711 24924753 -193112405 + (TG)n Simple_repeat Simple_repeat 2 43 0 413 123 0 15 chr3 24925218 24925283 -193111875 + Charlie8 DNA MER1_type 103 166 -2251 229 290 124 108 chr3 24927486 24927745 -193109413 + L2 LINE L2 3008 3270 -2 1736 186 7 3 chr3 24928155 24928462 -193108696 - AluJo SINE Alu -4 308 1 195 263 123 0 chr3 24928611 24928668 -193108490 + L2 LINE L2 422 485 -2829 347 285 18 42 chr3 24929110 24929275 -193107883 - MIR3 SINE MIR -37 171 11 505 243 151 0 chr3 24929378 24929530 -193107628 + MER5A DNA MER1_type 9 183 -6 525 327 118 0 chr3 24929953 24930173 -193106985 + MIR SINE MIR 16 261 -1 1898 177 0 0 chr3 24930286 24930596 -193106562 + AluJb SINE Alu 1 310 -2 897 161 0 0 chr3 24930606 24930736 -193106422 + FLAM_C SINE Alu 2 131 -2 27 0 0 0 chr3 24931224 24931251 -193105907 + AT_rich Low_complexity Low_complexity 1 27 0 1495 164 47 37 chr3 24932292 24932412 -193104746 + AluJb SINE Alu 1 118 -194 315 0 0 0 chr3 24932412 24932447 -193104711 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1495 164 47 37 chr3 24932447 24932625 -193104533 + AluJb SINE Alu 118 302 -10 250 220 34 0 chr3 24932696 24932755 -193104403 + GA-rich Low_complexity Low_complexity 2 62 0 419 233 165 94 chr3 24933055 24933337 -193103821 - L1MC4a LINE L1 -1635 6173 5856 2301 104 0 3 chr3 24933337 24933645 -193103513 + AluSq SINE Alu 1 307 -6 419 233 165 94 chr3 24933645 24933744 -193103414 - L1MC4a LINE L1 -1952 5856 5765 338 240 126 113 chr3 24933745 24933866 -193103292 - L1MC4a LINE L1 -2082 5726 5608 639 63 0 0 chr3 24933866 24933945 -193103213 + L1MA3 LINE L1 6225 6303 -2 338 240 126 113 chr3 24933945 24933968 -193103190 - L1MC4a LINE L1 -2200 5608 5587 254 93 0 23 chr3 24933968 24934011 -193103147 + (TA)n Simple_repeat Simple_repeat 2 43 0 338 240 126 113 chr3 24934011 24934332 -193102826 - L1MC4a LINE L1 -2221 5587 5254 741 142 0 0 chr3 24934409 24934515 -193102643 - AluSg/x SINE Alu -14 296 191 306 349 115 0 chr3 24934520 24934712 -193102446 - L1MC4a LINE L1 -979 5167 4954 392 336 74 45 chr3 24934819 24935266 -193101892 - L1MC4a LINE L1 -1344 4802 4343 1366 148 0 14 chr3 24935481 24935698 -193101460 + AluJb SINE Alu 55 268 -44 252 0 0 0 chr3 24935702 24935730 -193101428 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 401 195 91 0 chr3 24935730 24935807 -193101351 + MER96B DNA MER1_type? 170 253 -164 2237 125 0 3 chr3 24936354 24936666 -193100492 + AluSx SINE Alu 2 312 0 244 258 22 67 chr3 24936730 24936819 -193100339 + MIR SINE MIR 119 203 -59 294 290 58 72 chr3 24937452 24937590 -193099568 + MIR3 SINE MIR 72 207 -1 1204 152 0 0 chr3 24938309 24938487 -193098671 - AluSg/x SINE Alu -66 246 69 302 250 136 50 chr3 24938745 24938885 -193098273 - Charlie8 DNA MER1_type -2244 173 22 234 192 0 0 chr3 24939350 24939402 -193097756 + A-rich Low_complexity Low_complexity 1 52 0 279 0 0 0 chr3 24940180 24940211 -193096947 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1221 181 0 27 chr3 24940249 24940470 -193096688 - L1MB5 LINE L1 0 6174 5960 5557 161 17 14 chr3 24940513 24941528 -193095630 - L1MA9 LINE L1 -39 6273 5257 329 0 24 0 chr3 24941794 24941835 -193095323 + (CA)n Simple_repeat Simple_repeat 2 43 0 4815 144 27 1 chr3 24942440 24943175 -193093983 + MER6 DNA MER2_type 111 864 -1 237 226 19 0 chr3 24943336 24943389 -193093769 + GA-rich Low_complexity Low_complexity 2 55 0 262 209 0 22 chr3 24943443 24943534 -193093624 + CT-rich Low_complexity Low_complexity 2 90 0 342 0 0 0 chr3 24943534 24943572 -193093586 + (CA)n Simple_repeat Simple_repeat 1 38 0 1630 147 45 13 chr3 24943583 24943895 -193093263 + MER33 DNA MER1_type 3 324 0 588 153 110 0 chr3 24944354 24944472 -193092686 - L1MB3 LINE L1 -7 6176 6046 301 281 0 0 chr3 24946002 24946066 -193091092 + polypyrimidine Low_complexity Low_complexity 1 64 0 1366 162 54 17 chr3 24946067 24946364 -193090794 + MER33 DNA MER1_type 17 324 0 693 289 70 0 chr3 24947378 24947579 -193089579 + MIR SINE MIR 32 246 -16 495 321 58 47 chr3 24948963 24949306 -193087852 - L2 LINE L2 -961 2353 2007 4051 167 79 9 chr3 24949584 24950268 -193086890 - MER44D DNA MER2_type -1 604 1 800 281 66 4 chr3 24951052 24951294 -193085864 - MIR SINE MIR 0 262 6 280 331 99 7 chr3 24951306 24951448 -193085710 - MIR3 SINE MIR -45 163 9 232 155 24 179 chr3 24952399 24952483 -193084675 + MER5A DNA MER1_type 35 105 -84 275 259 15 44 chr3 24952524 24952659 -193084499 + MER117 DNA MER1_type 32 162 -35 261 330 53 0 chr3 24952857 24952951 -193084207 + L2 LINE L2 3209 3307 -6 588 165 0 33 chr3 24954629 24954750 -193082408 - Charlie1 DNA MER1_type -25 2736 2620 * 822 202 187 5 chr3 24954738 24954936 -193082222 - Charlie1 DNA MER1_type -2527 234 1 601 271 181 0 chr3 24955307 24955528 -193081630 + MIR SINE MIR 2 262 0 1539 176 15 112 chr3 24955819 24956222 -193080936 + MLT1A1 LTR MaLR 2 365 0 283 299 15 0 chr3 24956223 24956290 -193080868 - L2 LINE L2 -17 3255 3188 1865 157 20 3 chr3 24956981 24957281 -193079877 - AluJb SINE Alu -7 305 1 863 173 46 12 chr3 24957466 24957639 -193079519 + AluJo SINE Alu 101 279 -33 26 64 0 0 chr3 24957644 24957691 -193079467 + AT_rich Low_complexity Low_complexity 1 47 0 213 233 0 0 chr3 24959464 24959507 -193077651 + (CATATA)n Simple_repeat Simple_repeat 6 48 0 861 254 18 5 chr3 24960108 24960328 -193076830 + MIR SINE MIR 10 232 -30 1367 207 127 55 chr3 24960379 24960837 -193076321 + MLT1D LTR MaLR 15 505 0 752 250 54 92 chr3 24961174 24961881 -193075277 - L1ME LINE L1 -4981 1089 545 1286 156 8 63 chr3 24962678 24962915 -193074243 + MER58A DNA MER1_type 1 224 0 324 0 0 0 chr3 24963470 24963506 -193073652 + (CA)n Simple_repeat Simple_repeat 2 37 0 259 224 0 0 chr3 24964802 24964860 -193072298 + (CA)n Simple_repeat Simple_repeat 2 59 0 217 205 0 0 chr3 24965807 24965846 -193071312 + GA-rich Low_complexity Low_complexity 2 40 0 180 0 0 0 chr3 24966680 24966700 -193070458 + (A)n Simple_repeat Simple_repeat 1 20 0 594 272 214 0 chr3 24967176 24967382 -193069776 + MIR SINE MIR 13 262 0 287 273 11 23 chr3 24967994 24968082 -193069076 - MIR SINE MIR -77 131 45 186 262 0 0 chr3 24968146 24968188 -193068970 + MIR SINE MIR 107 148 -114 2761 233 57 16 chr3 24968202 24968271 -193068887 + L1ME LINE L1 7 72 -5998 249 83 0 0 chr3 24968271 24968307 -193068851 + (CA)n Simple_repeat Simple_repeat 1 36 0 222 37 0 0 chr3 24968309 24968336 -193068822 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2761 233 57 16 chr3 24968336 24968998 -193068160 + L1ME LINE L1 72 771 -5299 607 299 87 9 chr3 24969342 24969573 -193067585 + MIR SINE MIR 1 249 -13 217 364 13 0 chr3 24969589 24969666 -193067492 - MIR SINE MIR -86 122 45 22 35 0 0 chr3 24969838 24969867 -193067291 + AT_rich Low_complexity Low_complexity 1 29 0 210 222 52 111 chr3 24970888 24971023 -193066135 + MIR3 SINE MIR 12 138 -70 2104 132 0 19 chr3 24971437 24971755 -193065403 - AluSx SINE Alu 0 312 1 210 250 0 0 chr3 24972060 24972100 -193065058 - MIR SINE MIR -57 151 112 393 239 130 93 chr3 24972173 24972420 -193064738 - MIR SINE MIR 0 262 7 1451 278 45 47 chr3 24972879 24972963 -193064195 + ERVL LTR ERVL 4750 4833 -931 2422 158 82 2 chr3 24972963 24973363 -193063795 + MSTB1 LTR MaLR 1 432 0 1451 278 45 47 chr3 24973363 24973829 -193063329 + ERVL LTR ERVL 4833 5299 -465 354 260 164 7 chr3 24974116 24974262 -193062896 + LTR50 LTR ERVL 1 169 -626 719 253 113 58 chr3 24974352 24974704 -193062454 - L2 LINE L2 0 3313 2951 436 191 22 11 chr3 24976129 24976218 -193060940 + LTR16A1 LTR ERVL 55 144 -313 711 227 35 0 chr3 24976380 24976521 -193060637 - MIR SINE MIR -116 146 1 1939 178 60 93 chr3 24976564 24977111 -193060047 - MLT1F1 LTR MaLR -13 554 3 269 276 138 0 chr3 24978087 24978174 -193058984 + L2 LINE L2 3215 3313 0 438 94 0 0 chr3 24979015 24979079 -193058079 + (CA)n Simple_repeat Simple_repeat 2 65 0 375 319 30 7 chr3 24980570 24980705 -193056453 + MIR SINE MIR 10 147 -115 228 149 21 21 chr3 24981557 24981604 -193055554 - MER5B DNA MER1_type -85 93 47 1208 158 0 0 chr3 24981844 24982028 -193055130 + MER5A DNA MER1_type 5 188 -1 270 214 38 114 chr3 24982855 24982986 -193054172 + MIR SINE MIR 80 200 -62 1511 175 41 16 chr3 24983045 24983365 -193053793 + L1ME1 LINE L1 5521 5848 -318 1143 213 108 20 chr3 24983530 24983835 -193053323 + L1ME1 LINE L1 5830 6161 -5 254 330 145 19 chr3 24984209 24984582 -193052576 + L2 LINE L2 2546 2965 -349 954 174 60 65 chr3 24984825 24985240 -193051918 + MLT1A2 LTR MaLR 1 374 0 267 301 60 0 chr3 24985255 24985338 -193051820 + L2 LINE L2 3185 3272 0 1053 170 26 10 chr3 24985471 24985665 -193051493 + MER3 DNA MER1_type 13 209 0 2257 84 13 0 chr3 24986149 24986447 -193050711 - AluSp SINE Alu -11 302 1 349 289 41 8 chr3 24986749 24986870 -193050288 + MIR SINE MIR 39 163 -99 1388 209 94 44 chr3 24986870 24987184 -193049974 + L1ME1 LINE L1 5644 5996 -166 1990 134 0 0 chr3 24987184 24987475 -193049683 + AluSx SINE Alu 1 291 -21 1388 209 94 44 chr3 24987475 24987647 -193049511 + L1ME1 LINE L1 5996 6158 -4 2041 135 0 0 chr3 24987680 24987984 -193049174 + AluSx SINE Alu 7 310 -2 832 263 41 7 chr3 24988643 24988945 -193048213 + L1ME4a LINE L1 5569 5897 -224 1020 217 114 48 chr3 24988958 24989473 -193047685 - L2 LINE L2 -4 3309 2713 245 50 0 25 chr3 24989798 24989838 -193047320 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 182 261 43 0 chr3 24990384 24990430 -193046728 - L2 LINE L2 -15 3257 3210 * 502 278 52 77 chr3 24990398 24990592 -193046566 - MIR SINE MIR -25 237 49 183 313 16 0 chr3 24990879 24990943 -193046215 + L2 LINE L2 3192 3256 -16 478 228 14 83 chr3 24991190 24991284 -193045874 + Charlie8 DNA MER1_type 9 91 -250 2305 71 0 3 chr3 24991284 24991579 -193045579 - AluSx SINE Alu -16 296 3 478 228 14 83 chr3 24991579 24991629 -193045529 + Charlie8 DNA MER1_type 91 143 -198 661 244 137 0 chr3 24993780 24993948 -193043210 - MER91A DNA MER1_type -5 191 1 2676 256 56 22 chr3 24994017 24994181 -193042977 + L1ME3A LINE L1 5079 5236 -934 830 224 71 5 chr3 24994181 24994377 -193042781 + MER63A DNA MER1_type 2 210 0 2676 256 56 22 chr3 24994377 24995274 -193041884 + L1ME3A LINE L1 5236 6170 0 879 241 200 11 chr3 24996190 24996555 -193040603 + MER57B LTR ERV1 1 434 0 774 254 198 47 chr3 24997240 24997709 -193039449 + MLT1G1 LTR MaLR 4 543 -24 881 196 6 6 chr3 24997811 24997974 -193039184 - L1MC/D LINE L1 -591 5768 5606 183 80 0 0 chr3 24998820 24998845 -193038313 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 291 226 129 0 chr3 24998845 24998938 -193038220 - L2 LINE L2 -13 3259 3155 775 231 6 0 chr3 24999027 24999183 -193037975 + AluJo SINE Alu 125 281 -31 207 69 0 0 chr3 24999191 24999220 -193037938 + (CA)n Simple_repeat Simple_repeat 2 30 0 364 284 43 72 chr3 24999922 25000130 -193037028 + L1ME4a LINE L1 5851 6052 -69 1393 125 40 98 chr3 25000165 25000461 -193036697 + AluJb SINE Alu 33 311 -1 2469 177 107 4 chr3 25000486 25000972 -193036186 + MLT1F LTR MaLR 7 542 0 294 185 0 0 chr3 25001041 25001095 -193036063 + MLT1G1 LTR MaLR 512 565 -2 543 226 168 0 chr3 25001267 25001422 -193035736 + MER5A DNA MER1_type 9 189 0 646 208 195 0 chr3 25001430 25001579 -193035579 + MER5B DNA MER1_type 1 178 0 2718 204 45 7 chr3 25002102 25002662 -193034496 - MER119 DNA MER1_type 0 583 3 2142 139 25 70 chr3 25003447 25003878 -193033280 - MLT2D LTR ERVL -2 412 1 899 281 28 61 chr3 25003920 25004311 -193032847 - L2 LINE L2 0 3313 2936 305 274 68 0 chr3 25004354 25004471 -193032687 - L2 LINE L2 -471 2843 2719 779 254 203 4 chr3 25004506 25004782 -193032376 - L2 LINE L2 -728 2586 2256 205 340 90 0 chr3 25004807 25004907 -193032251 + L2 LINE L2 3145 3253 -19 847 218 86 49 chr3 25005013 25005256 -193031902 + MIR SINE MIR 1 252 -10 444 123 0 0 chr3 25005648 25005721 -193031437 + (CA)n Simple_repeat Simple_repeat 2 74 0 960 156 0 0 chr3 25005732 25005912 -193031246 + (CA)n Simple_repeat Simple_repeat 1 180 0 291 54 0 0 chr3 25006735 25006772 -193030386 + (CA)n Simple_repeat Simple_repeat 1 37 0 1087 167 24 29 chr3 25006902 25007112 -193030046 + MER3 DNA MER1_type 1 209 0 507 274 92 6 chr3 25007441 25007605 -193029553 + MIR SINE MIR 85 262 0 243 276 0 61 chr3 25007832 25007930 -193029228 - L2 LINE L2 -6 3307 3216 263 179 75 60 chr3 25008469 25008536 -193028622 + L3b LINE CR1 1430 1497 -86 2125 207 56 78 chr3 25008683 25009341 -193027817 + L1ME2 LINE L1 5511 6154 -10 236 179 179 24 chr3 25009506 25009590 -193027568 + L1MC4 LINE L1 7929 8025 -17 30 77 0 0 chr3 25011723 25011788 -193025370 + GC_rich Low_complexity Low_complexity 1 65 0 532 276 0 0 chr3 25012469 25012585 -193024573 + MIR SINE MIR 5 120 -142 276 152 0 0 chr3 25013669 25013715 -193023443 + L2 LINE L2 3268 3313 0 243 0 0 0 chr3 25015314 25015341 -193021817 + (A)n Simple_repeat Simple_repeat 1 27 0 1129 276 53 18 chr3 25016637 25017032 -193020126 + MLT1I LTR MaLR 1 409 0 455 258 16 16 chr3 25017210 25017334 -193019824 - L2 LINE L2 0 3313 3190 280 329 14 71 chr3 25017349 25017489 -193019669 - MIR3 SINE MIR -68 140 9 301 226 0 0 chr3 25017632 25017694 -193019464 + L2 LINE L2 3210 3271 -1 549 324 74 34 chr3 25018241 25018537 -193018621 + L1ME LINE L1 20 327 -5743 214 260 0 0 chr3 25019473 25019523 -193017635 + (TGAA)n Simple_repeat Simple_repeat 4 53 0 368 302 8 8 chr3 25020241 25020367 -193016791 - LTR67 LTR ERVL 0 557 432 773 267 124 50 chr3 25020380 25020841 -193016317 + MLT1H1 LTR MaLR 35 535 -20 2632 136 29 10 chr3 25020841 25021259 -193015899 - MSTB LTR MaLR 0 426 1 773 267 124 50 chr3 25021259 25021280 -193015878 + MLT1H1 LTR MaLR 535 553 -2 625 266 25 19 chr3 25022351 25022544 -193014614 - MLT1G1 LTR MaLR -6 587 372 270 138 32 32 chr3 25022549 25022643 -193014515 + CT-rich Low_complexity Low_complexity 2 95 0 998 234 63 23 chr3 25022648 25022947 -193014211 - MLT1G1 LTR MaLR -284 311 1 829 232 25 51 chr3 25022947 25023269 -193013889 - LTR16A1 LTR ERVL -7 450 81 1311 248 35 64 chr3 25023540 25023992 -193013166 - MLT1K LTR MaLR -58 530 92 330 282 35 114 chr3 25024482 25024737 -193012421 + L3b LINE CR1 1151 1385 -198 276 242 61 10 chr3 25024942 25025041 -193012117 - MLT1L LTR MaLR 0 615 512 294 269 144 38 chr3 25025105 25025265 -193011893 - MLT1L LTR MaLR -228 387 211 548 314 64 70 chr3 25025539 25025995 -193011163 + MLT1K LTR MaLR 133 585 -3 341 246 27 27 chr3 25026344 25026454 -193010704 + MIR3 SINE MIR 97 206 -2 230 239 303 0 chr3 25026451 25026560 -193010598 - MIR3 SINE MIR -44 164 23 * 466 281 6 31 chr3 25027350 25027510 -193009648 + MER112 DNA MER1_type 6 161 -99 1478 174 26 40 chr3 25027537 25027841 -193009317 - AluJo SINE Alu -8 304 5 793 297 59 41 chr3 25028125 25028566 -193008592 - LTR16B LTR ERVL -15 449 1 407 288 141 61 chr3 25028596 25029369 -193007789 - L2 LINE L2 -2 3270 2453 280 278 74 37 chr3 25030326 25030434 -193006724 + L2 LINE L2 3202 3313 0 4628 144 26 1 chr3 25030791 25031526 -193005632 - L1MB3 LINE L1 -4 6179 5427 1380 134 104 5 chr3 25031554 25031890 -193005268 - LTR47A LTR ERVL 0 452 1 * 2194 160 27 3 chr3 25031890 25032257 -193004901 - MSTB1 LTR MaLR -40 392 17 256 86 0 0 chr3 25032276 25032311 -193004847 - MSTB LTR MaLR -379 53 19 292 54 0 0 chr3 25032332 25032369 -193004789 - MSTB LTR MaLR -373 53 17 256 86 0 0 chr3 25032360 25032395 -193004763 - MSTB LTR MaLR -379 53 19 * 256 62 0 0 chr3 25032388 25032420 -193004738 - MSTB1 LTR MaLR -373 53 22 282 167 0 19 chr3 25032444 25032498 -193004660 - MSTB1 LTR MaLR -379 53 1 884 98 0 8 chr3 25032498 25032631 -193004527 - L1MB3 LINE L1 -734 5449 5318 1823 184 103 29 chr3 25032636 25033054 -193004104 - L1ME2 LINE L1 -10 6154 5706 315 292 180 25 chr3 25033180 25033341 -193003817 - MIR SINE MIR -14 248 63 2249 90 3 10 chr3 25033600 25033900 -193003258 + AluSg SINE Alu 1 298 -12 1727 233 42 22 chr3 25034151 25034602 -193002556 + MLT1J LTR MaLR 24 483 -28 376 259 167 19 chr3 25034883 25035045 -193002113 + MIR SINE MIR 77 262 0 284 48 24 0 chr3 25035802 25035844 -193001314 + (TA)n Simple_repeat Simple_repeat 2 44 0 31 26 0 0 chr3 25035856 25035894 -193001264 + AT_rich Low_complexity Low_complexity 1 38 0 658 99 44 0 chr3 25035894 25036171 -193000987 + (TA)n Simple_repeat Simple_repeat 1 289 0 319 200 14 14 chr3 25036171 25036241 -193000917 + L1MCa LINE L1 1995 2064 -4362 313 131 47 0 chr3 25036243 25036350 -193000808 + (TA)n Simple_repeat Simple_repeat 1 112 0 251 265 0 15 chr3 25036858 25036926 -193000232 - LTR67 LTR ERVL -1 556 490 260 241 160 0 chr3 25037217 25037337 -192999821 + MIR SINE MIR 100 246 -16 21 0 0 0 chr3 25037339 25037360 -192999798 + AT_rich Low_complexity Low_complexity 1 21 0 429 335 56 37 chr3 25038296 25038511 -192998647 - L2 LINE L2 -527 2787 2569 1717 181 0 23 chr3 25040074 25040384 -192996774 - AluJo SINE Alu -9 303 1 410 253 42 58 chr3 25040921 25041111 -192996047 - MLT1J LTR MaLR 0 511 325 1793 232 21 22 chr3 25041116 25041650 -192995508 - MER119 DNA MER1_type 0 583 1 307 239 0 0 chr3 25042373 25042440 -192994718 + MER116 DNA Mariner 8 74 -6 234 250 26 26 chr3 25043098 25043174 -192993984 + MIR SINE MIR 56 131 -131 2087 52 16 0 chr3 25043963 25044214 -192992944 + L1PA6 LINE L1 5898 6152 -2 608 233 0 32 chr3 25044504 25044684 -192992474 + MIR SINE MIR 33 203 -59 300 278 83 49 chr3 25044742 25044886 -192992272 - L3 LINE CR1 -6 1571 1423 1448 264 70 22 chr3 25045848 25046345 -192990813 + MLT1L LTR MaLR 1 521 -94 613 240 180 11 chr3 25046351 25046534 -192990624 + MIR SINE MIR 12 225 -37 2519 174 44 21 chr3 25046665 25047187 -192989971 + L1M4 LINE L1 5285 5818 -356 261 261 232 21 chr3 25047195 25047436 -192989722 + L1M4 LINE L1 4358 4649 -1497 703 175 16 48 chr3 25047489 25047615 -192989543 + FLAM_A SINE Alu 1 122 -11 278 261 14 0 chr3 25047893 25047962 -192989196 - MLT1J2 LTR MaLR -321 129 60 251 273 45 0 chr3 25049149 25049215 -192987943 + MIR SINE MIR 78 146 -62 1011 146 6 24 chr3 25049269 25049434 -192987724 + AluJo SINE Alu 1 162 -150 573 133 16 45 chr3 25049472 25049739 -192987419 + GA-rich Low_complexity Low_complexity 1 259 0 249 317 198 0 chr3 25049963 25050190 -192986968 - Charlie8 DNA MER1_type -2145 272 1 360 228 193 0 chr3 25050533 25050647 -192986511 + MIR3 SINE MIR 14 149 -59 312 227 173 18 chr3 25050840 25050950 -192986208 - L2 LINE L2 -4 3309 3183 818 178 0 6 chr3 25050961 25051130 -192986028 + GA-rich Low_complexity Low_complexity 1 168 0 406 236 109 0 chr3 25051130 25051240 -192985918 - MER63 DNA MER1_type -88 748 1 361 296 90 43 chr3 25051253 25051530 -192985628 - L2 LINE L2 -553 2761 2472 296 274 27 14 chr3 25051524 25051597 -192985561 - L2 LINE L2 -62 3210 3137 * 486 243 109 62 chr3 25052174 25052520 -192984638 + MLT1H LTR MaLR 66 549 0 327 83 100 17 chr3 25052633 25052693 -192984465 + LTR8A LTR ERV1 1 65 -662 462 223 107 0 chr3 25052699 25052802 -192984356 + MER50 LTR ERV1 8 121 -613 2004 153 0 0 chr3 25052818 25053112 -192984046 + AluJb SINE Alu 3 296 -16 4506 127 44 3 chr3 25053117 25053795 -192983363 + MER50 LTR ERV1 1 706 -28 306 82 41 0 chr3 25053797 25053846 -192983312 + L1MB4 LINE L1 6129 6179 -1 1569 200 47 75 chr3 25053853 25054409 -192982749 + L1ME1 LINE L1 1849 2388 -4008 660 160 0 0 chr3 25054427 25054521 -192982637 - AluS SINE Alu -218 95 2 1399 223 71 103 chr3 25054614 25054916 -192982242 + MER76 LTR ERV 24 334 -354 1752 57 80 69 chr3 25054916 25055178 -192981980 - AluSc SINE Alu -44 265 1 1399 223 71 103 chr3 25055178 25055535 -192981623 + MER76 LTR ERV 334 662 -26 5630 216 40 32 chr3 25055538 25056423 -192980735 + L1ME1 LINE L1 2397 3274 -2941 2137 120 3 13 chr3 25056423 25056739 -192980419 + AluSq SINE Alu 1 313 0 5630 216 40 32 chr3 25056739 25056978 -192980180 + L1ME1 LINE L1 3274 3510 -2705 1962 129 14 7 chr3 25056978 25057264 -192979894 + AluSx SINE Alu 1 288 -24 5630 216 40 32 chr3 25057264 25057807 -192979351 + L1ME1 LINE L1 3510 4077 -2138 2251 159 36 29 chr3 25057807 25058356 -192978802 + MLT2A2 LTR ERVL 1 554 0 5402 188 77 15 chr3 25058356 25059155 -192978003 + L1ME1 LINE L1 4073 4821 -1414 222 37 0 0 chr3 25059155 25059182 -192977976 + (TG)n Simple_repeat Simple_repeat 2 28 0 5402 188 77 15 chr3 25059182 25060411 -192976747 + L1ME1 LINE L1 4821 6226 -9 4765 132 26 25 chr3 25060420 25060528 -192976630 + L1 LINE L1 3952 4058 -2088 2591 58 0 22 chr3 25060528 25060841 -192976317 + AluY SINE Alu 1 306 -5 4765 132 26 25 chr3 25060841 25061586 -192975572 + L1 LINE L1 4058 4806 -1340 2013 153 68 60 chr3 25061586 25061933 -192975225 + Tigger2a DNA MER2_type 17 369 -2339 788 205 0 0 chr3 25061933 25062060 -192975098 + FLAM_A SINE Alu 1 127 -6 2013 153 68 60 chr3 25062060 25062125 -192975033 + Tigger2a DNA MER2_type 369 432 -2 822 224 102 8 chr3 25062131 25062444 -192974714 + L1MA9 LINE L1 5921 6290 -1 1567 133 136 45 chr3 25062982 25063312 -192973846 - MER46B DNA MER2_type -1 235 1 288 327 96 0 chr3 25063699 25063803 -192973355 - L2 LINE L2 -3 3269 3156 322 259 83 0 chr3 25063903 25064011 -192973147 - HAL1b LINE L1 -15 1333 1217 213 353 118 17 chr3 25064268 25064387 -192972771 + MIR SINE MIR 17 147 -61 201 244 0 0 chr3 25064449 25064490 -192972668 - L2 LINE L2 -94 3178 3138 1395 273 26 19 chr3 25064526 25064612 -192972546 + L2 LINE L2 2641 2725 -588 2754 88 40 3 chr3 25064612 25064963 -192972195 - THE1B LTR MaLR 0 364 1 1395 273 26 19 chr3 25064963 25065538 -192971620 + L2 LINE L2 2725 3309 -4 352 191 85 11 chr3 25065585 25065679 -192971479 - MER91C DNA MER1_type -37 103 3 22 0 0 0 chr3 25065720 25065742 -192971416 + AT_rich Low_complexity Low_complexity 1 22 0 622 281 99 53 chr3 25065751 25066001 -192971157 - L1ME4a LINE L1 -56 6065 5828 989 248 14 18 chr3 25066001 25066223 -192970935 + MER58A DNA MER1_type 1 221 -3 622 281 99 53 chr3 25066223 25066445 -192970713 - L1ME4a LINE L1 -293 5828 5571 2284 127 9 3 chr3 25067083 25067406 -192969752 - L1PB3 LINE L1 -1 6153 5829 189 0 0 0 chr3 25068347 25068368 -192968790 + (TTTTTA)n Simple_repeat Simple_repeat 6 26 0 297 143 0 0 chr3 25068789 25068831 -192968327 + MER5B DNA MER1_type 1 42 -136 2829 206 67 28 chr3 25068912 25069043 -192968115 + L1ME2 LINE L1 5455 5579 -755 2399 92 0 16 chr3 25069043 25069358 -192967800 + AluSg SINE Alu 1 310 0 2829 206 67 28 chr3 25069358 25069917 -192967241 + L1ME2 LINE L1 5579 6334 0 478 244 42 34 chr3 25069923 25070042 -192967116 + MER5B DNA MER1_type 59 178 0 2383 221 46 5 chr3 25070520 25071082 -192966076 + L1ME2 LINE L1 5571 6155 -9 3516 187 78 36 chr3 25071436 25072219 -192964939 + L1MB5 LINE L1 4864 5612 -562 5391 81 0 6 chr3 25072219 25072900 -192964258 + L1PA14 LINE L1 5484 6160 -1 3516 187 78 36 chr3 25072900 25073059 -192964099 + L1MB5 LINE L1 5612 5763 -411 2201 78 63 0 chr3 25073059 25073343 -192963815 + AluY SINE Alu 1 302 -9 3516 187 78 36 chr3 25073343 25073651 -192963507 + L1MB5 LINE L1 5763 6165 -9 483 254 123 41 chr3 25073779 25073999 -192963159 + MIR SINE MIR 7 244 -18 10100 180 50 10 chr3 25074102 25075939 -192961219 + L1MA4 LINE L1 13 1921 -5247 * 11426 176 30 78 chr3 25075928 25076188 -192960970 + L1MA4 LINE L1 2652 2923 -4244 2025 123 7 20 chr3 25076188 25076490 -192960668 + AluSg1 SINE Alu 1 298 -11 11426 176 30 78 chr3 25076490 25079493 -192957665 + L1MA4 LINE L1 2923 5794 -1373 3487 133 27 21 chr3 25079493 25080118 -192957040 + L1MA4 LINE L1 6689 7318 -3 405 304 95 0 chr3 25080738 25080886 -192956272 - MIR SINE MIR -48 214 53 243 122 49 0 chr3 25080927 25080968 -192956190 + L1ME LINE L1 5681 5723 -447 24 53 0 0 chr3 25080985 25081023 -192956135 + AT_rich Low_complexity Low_complexity 1 38 0 375 256 81 56 chr3 25081996 25082156 -192955002 + MER5A DNA MER1_type 1 164 -25 181 317 0 0 chr3 25082848 25082889 -192954269 - L3b LINE CR1 -90 1493 1453 215 206 29 0 chr3 25084141 25084209 -192952949 + (CATATA)n Simple_repeat Simple_repeat 2 71 0 1576 184 10 36 chr3 25087828 25088132 -192949026 + AluJo SINE Alu 1 296 -16 2702 166 74 19 chr3 25088497 25089093 -192948065 + L1MB8 LINE L1 5545 6173 -5 201 326 122 44 chr3 25089169 25089350 -192947808 - MIR3 SINE MIR -11 197 3 2131 127 0 13 chr3 25089481 25089781 -192947377 - AluJb SINE Alu -16 296 1 2045 124 0 38 chr3 25090324 25090639 -192946519 + AluSx SINE Alu 3 305 -7 654 137 0 0 chr3 25091418 25091520 -192945638 - AluJ/FLAM SINE Alu -210 102 1 21 57 0 0 chr3 25091658 25091693 -192945465 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr3 25093460 25093498 -192943660 + AT_rich Low_complexity Low_complexity 1 38 0 600 319 114 33 chr3 25094379 25094740 -192942418 + L3 LINE CR1 1117 1506 -71 32 43 0 0 chr3 25096706 25096752 -192940406 + AT_rich Low_complexity Low_complexity 1 46 0 2346 71 10 0 chr3 25096835 25097130 -192940028 - AluSp SINE Alu -15 298 1 180 111 0 0 chr3 25098687 25098714 -192938444 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 850 213 77 19 chr3 25098908 25099115 -192938043 + MER20 DNA MER1_type 1 219 0 292 268 61 0 chr3 25099191 25099273 -192937885 + MIR3 SINE MIR 109 195 -13 337 285 124 54 chr3 25100751 25100937 -192936221 + L1ME4a LINE L1 3913 4111 -2035 360 324 96 36 chr3 25100985 25101235 -192935923 + L1ME4a LINE L1 5333 5597 -2211 280 111 0 0 chr3 25101235 25101271 -192935887 - tRNA-Asp-GAC tRNA tRNA -38 37 2 309 215 25 83 chr3 25101307 25101398 -192935760 + L1ME4a LINE L1 5616 5700 -421 2043 112 10 10 chr3 25101398 25101693 -192935465 - AluSx SINE Alu -17 295 1 309 215 25 83 chr3 25101693 25101722 -192935436 + L1ME4a LINE L1 5700 5729 -392 244 250 154 32 chr3 25101810 25102030 -192935128 + L1ME4a LINE L1 5872 6118 -3 284 211 10 39 chr3 25102807 25102911 -192934247 + G-rich Low_complexity Low_complexity 1 101 0 331 274 120 17 chr3 25104004 25104121 -192933037 - L2 LINE L2 -1 3312 3184 751 272 93 102 chr3 25104362 25104571 -192932587 + L1MEd LINE L1 14 223 -5896 326 235 184 20 chr3 25104571 25104669 -192932489 - MER81 DNA DNA 0 114 1 751 272 93 102 chr3 25104669 25105166 -192931992 + L1MEd LINE L1 223 714 -5405 180 0 0 0 chr3 25105318 25105338 -192931820 + (TC)n Simple_repeat Simple_repeat 2 21 0 346 0 47 81 chr3 25105353 25105439 -192931719 + (TTATA)n Simple_repeat Simple_repeat 5 87 0 2291 70 0 14 chr3 25105444 25105729 -192931429 - AluY SINE Alu -26 285 5 390 276 160 27 chr3 25105989 25106304 -192930854 - L1M4c LINE L1 -868 1875 1514 1833 168 0 3 chr3 25107187 25107478 -192929680 + AluJb SINE Alu 7 296 -16 530 279 93 0 chr3 25107528 25107623 -192929535 + MER5B DNA MER1_type 22 107 -71 198 0 0 0 chr3 25107623 25107645 -192929513 + (TG)n Simple_repeat Simple_repeat 2 23 0 * 252 0 0 0 chr3 25107644 25107672 -192929486 + (TA)n Simple_repeat Simple_repeat 1 28 0 530 279 93 0 chr3 25107645 25107716 -192929442 + MER5B DNA MER1_type 107 174 -4 574 205 193 0 chr3 25107731 25107883 -192929275 + MER5A DNA MER1_type 4 189 0 1070 287 92 27 chr3 25107957 25108361 -192928797 + LTR67 LTR ERVL 112 541 -16 951 251 62 13 chr3 25109104 25109331 -192927827 - MIR SINE MIR -22 240 3 1840 190 11 16 chr3 25109440 25109803 -192927355 + MLT1A1 LTR MaLR 3 363 -2 2107 134 51 24 chr3 25109807 25110180 -192926978 + MLT1A1-int LTR MaLR 6 388 -1347 780 178 8 0 chr3 25111082 25111211 -192925947 - FLAM_A SINE Alu -2 131 2 635 309 60 36 chr3 25111252 25111782 -192925376 - L1ME LINE L1 -342 5822 5280 2127 123 0 10 chr3 25111797 25112098 -192925060 - AluSx SINE Alu -14 298 1 1532 189 3 53 chr3 25113042 25113246 -192923912 - AluJo SINE Alu -10 302 89 2059 143 35 27 chr3 25113246 25113618 -192923540 + THE1C LTR MaLR 1 375 0 10295 110 23 33 chr3 25113618 25115214 -192921944 + THE1C-int LTR MaLR 1 1580 0 2268 125 16 26 chr3 25115214 25115591 -192921567 + THE1C LTR MaLR 1 373 -2 1532 189 3 53 chr3 25115591 25115702 -192921456 - AluJo SINE Alu -220 92 1 361 233 86 35 chr3 25116274 25116390 -192920768 + MIR SINE MIR 49 170 -92 241 213 16 16 chr3 25116569 25116630 -192920528 - MLT1L LTR MaLR -5 610 550 449 247 217 72 chr3 25116821 25117056 -192920102 - MLT1L LTR MaLR -338 277 9 1905 143 0 10 chr3 25117560 25117853 -192919305 - AluJb SINE Alu -22 290 1 277 204 37 68 chr3 25118025 25118187 -192918971 + L1ME4a LINE L1 5965 6121 0 22 0 0 0 chr3 25118934 25118956 -192918202 + AT_rich Low_complexity Low_complexity 1 22 0 289 226 83 12 chr3 25119560 25119644 -192917514 - MLT1J LTR MaLR -418 93 4 320 331 62 0 chr3 25119769 25119899 -192917259 + MIR3 SINE MIR 59 196 -12 6322 145 21 29 chr3 25121458 25121999 -192915159 + L1MA3 LINE L1 3988 4532 -1773 1931 100 86 0 chr3 25121999 25122291 -192914867 + AluSp SINE Alu 1 315 0 6322 145 21 29 chr3 25122291 25123588 -192913570 + L1MA3 LINE L1 4532 5782 -523 2232 101 0 55 chr3 25123588 25123916 -192913242 + AluSg SINE Alu 1 310 0 6322 145 21 29 chr3 25123916 25124434 -192912724 + L1MA3 LINE L1 5782 6303 -2 409 302 108 74 chr3 25125089 25125467 -192911691 + MLT1L LTR MaLR 225 615 0 918 221 89 36 chr3 25126209 25126490 -192910668 + MLT1I LTR MaLR 108 403 -6 2335 162 81 39 chr3 25127518 25128037 -192909121 + L1MB7 LINE L1 5628 6168 -16 658 235 52 13 chr3 25128998 25129151 -192908007 - MLT1I LTR MaLR -247 162 4 1268 186 73 7 chr3 25129163 25129464 -192907694 - MER33 DNA MER1_type -3 321 1 30 45 0 0 chr3 25129533 25129577 -192907581 + AT_rich Low_complexity Low_complexity 1 44 0 388 296 0 9 chr3 25129728 25129836 -192907322 + MIR3 SINE MIR 95 201 -7 2190 123 10 0 chr3 25130907 25131209 -192905949 + AluY SINE Alu 1 305 -6 661 226 65 6 chr3 25132228 25132396 -192904762 + MIR SINE MIR 85 262 0 479 202 42 17 chr3 25132535 25132654 -192904504 - L1MC5 LINE L1 -34 7927 7806 353 293 26 9 chr3 25132692 25132808 -192904350 - L1MB7 LINE L1 -11 6173 6056 364 286 137 31 chr3 25133501 25133662 -192903496 + MIR SINE MIR 79 256 -6 438 232 0 40 chr3 25133696 25133795 -192903363 - LTR16A1 LTR ERVL 0 457 363 795 146 58 102 chr3 25133795 25134001 -192903157 - L1MB8 LINE L1 -96 6082 5886 * 1191 214 0 0 chr3 25133992 25134230 -192902928 - L1MB7 LINE L1 -253 5925 5688 1077 225 93 31 chr3 25134256 25134611 -192902547 - LTR16A1 LTR ERVL -80 377 1 2422 70 3 26 chr3 25135105 25135417 -192901741 - AluY SINE Alu -6 305 1 363 263 30 10 chr3 25135555 25135654 -192901504 + MIR SINE MIR 40 140 -68 2736 206 25 9 chr3 25136230 25136792 -192900366 - L1MC4a LINE L1 0 7808 7238 495 229 122 15 chr3 25136887 25137018 -192900140 - L2 LINE L2 0 3313 3169 1631 173 74 6 chr3 25137193 25137557 -192899601 - MER114 LTR ERV -259 389 1 619 276 57 10 chr3 25138120 25138312 -192898846 - MIR SINE MIR -11 251 51 2448 69 0 13 chr3 25138645 25138948 -192898210 - AluY SINE Alu -12 299 1 445 188 71 9 chr3 25139177 25139289 -192897869 - MIR SINE MIR -40 222 104 981 223 33 83 chr3 25139297 25139730 -192897428 - MLT1B LTR MaLR 0 390 1 2150 134 47 19 chr3 25139739 25140104 -192897054 + THE1C LTR MaLR 1 375 0 24 0 0 0 chr3 25140616 25140640 -192896518 + AT_rich Low_complexity Low_complexity 1 24 0 1748 120 11 22 chr3 25140644 25140920 -192896238 + AluSp SINE Alu 41 313 0 301 304 0 0 chr3 25141437 25141516 -192895642 - L2 LINE L2 -6 3307 3229 1874 201 39 87 chr3 25141680 25142183 -192894975 + MLT2B1 LTR ERVL 1 478 -42 501 17 0 0 chr3 25142183 25142241 -192894917 + (CA)n Simple_repeat Simple_repeat 2 59 0 1874 201 39 87 chr3 25142241 25142275 -192894883 + MLT2B1 LTR ERVL 478 512 -8 2476 239 55 44 chr3 25142299 25142767 -192894391 + MLT2F LTR ERVL 1 479 -184 1213 189 28 0 chr3 25142767 25142979 -192894179 - MER20 DNA MER1_type -1 218 1 2476 239 55 44 chr3 25142979 25143164 -192893994 + MLT2F LTR ERVL 479 661 -2 505 348 116 23 chr3 25143780 25144288 -192892870 - L2 LINE L2 -19 3294 2733 2042 255 96 7 chr3 25144407 25145004 -192892154 - L2 LINE L2 -344 2970 2321 383 286 17 8 chr3 25145029 25145148 -192892010 + MER34 LTR ERV1 7 126 -416 * 734 221 128 42 chr3 25145119 25145528 -192891630 + LTR48 LTR ERV1 140 780 -7 511 81 14 0 chr3 25145672 25145746 -192891412 - MLT2A2 LTR ERVL 0 453 379 891 234 24 13 chr3 25145833 25146150 -192891008 - MLT2B3 LTR ERVL -54 500 184 2526 131 10 22 chr3 25146151 25146564 -192890594 - L1P LINE L1 -952 5194 4787 7890 156 56 92 chr3 25146570 25148600 -192888558 + LTR48B-int LTR ERV1 4157 6111 -220 2531 47 0 35 chr3 25148600 25148918 -192888240 - AluY SINE Alu -4 307 1 7890 156 56 92 chr3 25148918 25148951 -192888207 + LTR48B-int LTR ERV1 6111 6144 -187 629 231 152 46 chr3 25149050 25149530 -192887628 + LTR48B LTR ERV1 1 633 -11 3192 247 181 16 chr3 25149537 25150728 -192886430 - L2 LINE L2 -1016 2298 912 1830 192 63 63 chr3 25150733 25151227 -192885931 + MLT1D LTR MaLR 5 498 -7 2210 110 41 9 chr3 25151231 25151576 -192885582 - MER46B DNA MER2_type 0 236 6 277 202 71 12 chr3 25151511 25151595 -192885563 + MER46A DNA MER2_type 75 163 -73 * 242 261 33 43 chr3 25151641 25151733 -192885425 - L2 LINE L2 -2477 837 747 317 264 135 20 chr3 25152608 25152756 -192884402 + MIR SINE MIR 79 243 -19 1001 192 0 0 chr3 25153077 25153249 -192883909 - MER3 DNA MER1_type -11 198 27 207 224 155 0 chr3 25153554 25153612 -192883546 - L2 LINE L2 -1 3312 3246 833 246 97 14 chr3 25153667 25154085 -192883073 - L2 LINE L2 -185 3128 2677 1223 219 34 24 chr3 25154122 25154434 -192882724 - MER39 LTR ERV1 -2 687 393 441 163 38 0 chr3 25154445 25154525 -192882633 + MLT1A1 LTR MaLR 3 85 -280 1293 179 0 18 chr3 25154527 25154745 -192882413 + AluJb SINE Alu 5 218 -94 1026 131 11 0 chr3 25154745 25154920 -192882238 - MSTA-int LTR MaLR -1474 177 1 2714 135 51 17 chr3 25154920 25155334 -192881824 - MSTA LTR MaLR 0 428 1 3507 153 39 22 chr3 25155334 25155970 -192881188 + Tigger2 DNA MER2_type 2072 2718 0 664 283 49 29 chr3 25157048 25157292 -192879866 + MIR SINE MIR 14 262 0 1536 113 4 13 chr3 25157298 25157529 -192879629 - MER39 LTR ERV1 -5 702 474 3275 118 63 44 chr3 25157529 25158098 -192879060 + MER4D LTR ERV1 1 580 -323 229 207 138 17 chr3 25158085 25158143 -192879015 - MER39 LTR ERV1 -319 388 324 * 1285 171 147 11 chr3 25158390 25158780 -192878378 + MER39 LTR ERV1 1 432 -221 2396 153 138 4 chr3 25158780 25159231 -192877927 - MER4D LTR ERV1 0 903 393 6466 100 17 10 chr3 25159235 25160027 -192877131 + L1PA16 LINE L1 5105 5906 -260 2808 110 11 3 chr3 25160027 25160399 -192876759 + THE1C LTR MaLR 1 375 0 6466 100 17 10 chr3 25160399 25160661 -192876497 + L1PA16 LINE L1 5906 6165 -1 248 212 222 0 chr3 25160819 25160918 -192876240 + MIR SINE MIR 118 238 -24 372 282 51 8 chr3 25161111 25161228 -192875930 - MIR3 SINE MIR -6 202 81 1927 130 3 7 chr3 25161360 25161691 -192875467 + AluY SINE Alu 1 330 0 1790 203 68 60 chr3 25162326 25162872 -192874286 + MER34C LTR ERV1 36 585 0 226 299 29 51 chr3 25162872 25163009 -192874149 - MIR SINE MIR -116 146 13 2455 86 0 0 chr3 25163730 25164031 -192873127 - AluSq SINE Alu -12 301 1 1813 187 50 22 chr3 25164463 25164827 -192872331 + MLT1A2 LTR MaLR 1 374 0 1028 256 47 18 chr3 25165120 25165397 -192871761 + MLT1I LTR MaLR 125 409 0 398 266 0 11 chr3 25165420 25165514 -192871644 - L2 LINE L2 -1 3271 3179 832 181 67 0 chr3 25165758 25165907 -192871251 + MER5A DNA MER1_type 1 159 -30 303 273 152 15 chr3 25165791 25165923 -192871235 - MER5A DNA MER1_type -23 166 17 * 399 295 98 36 chr3 25166743 25166967 -192870191 - MIR SINE MIR -12 250 13 1166 243 141 17 chr3 25167621 25167983 -192869175 - MLT1I LTR MaLR -1 408 2 322 293 68 8 chr3 25168169 25168302 -192868856 - MIR SINE MIR -20 242 102 382 219 41 41 chr3 25168388 25168511 -192868647 + MER77 LTR ERV1 90 212 -393 689 111 0 10 chr3 25168679 25168778 -192868380 + MER4A LTR ERV1 1 98 -566 1822 130 9 34 chr3 25168778 25169132 -192868026 + MER4A LTR ERV1 261 664 0 13432 122 133 92 chr3 25169135 25172672 -192864486 + MER4A-int LTR ERV1 1 3681 -2917 12916 98 53 11 chr3 25172671 25174660 -192862498 + MER4A-int LTR ERV1 3837 5908 -690 * 30511 34 3 1 chr3 25174660 25180801 -192856357 + L1PA4 LINE L1 1 6155 0 4315 104 51 18 chr3 25180802 25181484 -192855674 + MER4A-int LTR ERV1 5892 6596 -2 508 189 0 11 chr3 25181492 25181587 -192855571 + MER4A LTR ERV1 5 98 -566 1749 147 3 24 chr3 25181587 25181940 -192855218 + MER4A LTR ERV1 261 664 0 511 230 44 122 chr3 25181961 25182322 -192854836 + MER77 LTR ERV1 322 633 -4 276 268 14 0 chr3 25182382 25182453 -192854705 - MIR SINE MIR -150 112 41 1016 178 89 15 chr3 25182586 25182788 -192854370 + MER20 DNA MER1_type 2 218 -1 1981 112 47 78 chr3 25182840 25183225 -192853933 - THE1C LTR MaLR 0 375 3 2605 164 83 34 chr3 25183385 25183930 -192853228 + MER39 LTR ERV1 1 629 -78 3463 86 38 14 chr3 25183930 25184430 -192852728 - L1PA8 LINE L1 -10 6162 5651 2605 164 83 34 chr3 25184430 25184514 -192852644 + MER39 LTR ERV1 629 707 0 1250 255 154 17 chr3 25184554 25184962 -192852196 - LTR16B LTR ERVL 0 464 1 2090 124 79 19 chr3 25185179 25185558 -192851600 + MER34C LTR ERV1 7 408 -177 335 284 17 17 chr3 25186896 25187012 -192850146 - L2 LINE L2 -1 3312 3197 486 227 58 19 chr3 25187511 25187665 -192849493 - LTR16C LTR ERVL -4 487 328 1563 232 102 9 chr3 25188906 25189355 -192847803 + MER90 LTR ERV1 119 609 -5 895 294 88 26 chr3 25189625 25190010 -192847148 + LTR16C LTR ERVL 83 491 0 1626 171 56 0 chr3 25190050 25190222 -192846936 - AluJb SINE Alu 0 308 113 251 27 0 27 chr3 25190222 25190259 -192846899 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 1626 171 56 0 chr3 25190259 25190379 -192846779 - AluJb SINE Alu -195 113 1 238 333 90 32 chr3 25190432 25190578 -192846580 + MLT1K LTR MaLR 169 330 -258 1149 251 144 22 chr3 25190578 25191007 -192846151 + MLT1H1 LTR MaLR 3 501 -54 2289 109 3 0 chr3 25191007 25191311 -192845847 + AluSx SINE Alu 1 305 -7 1149 251 144 22 chr3 25191311 25191374 -192845784 + MLT1H1 LTR MaLR 501 555 0 238 333 90 32 chr3 25191374 25191416 -192845742 + MLT1K LTR MaLR 330 368 -220 414 302 107 67 chr3 25191579 25191999 -192845159 - L2 LINE L2 -9 3263 2827 23 33 0 0 chr3 25192556 25192586 -192844572 + AT_rich Low_complexity Low_complexity 1 30 0 783 272 63 48 chr3 25193635 25194029 -192843129 + MLT1L LTR MaLR 216 615 0 261 257 45 128 chr3 25194144 25194323 -192842835 + MIR SINE MIR 17 180 -82 22 35 0 0 chr3 25196080 25196109 -192841049 + AT_rich Low_complexity Low_complexity 1 29 0 931 193 17 84 chr3 25196341 25196579 -192840579 + MER58A DNA MER1_type 1 222 -2 2395 97 0 0 chr3 25196719 25197028 -192840130 - AluSx SINE Alu -3 309 1 2288 97 17 3 chr3 25197628 25197927 -192839231 + AluY SINE Alu 1 303 -8 1624 236 49 47 chr3 25198160 25198567 -192838591 - LTR16C LTR ERVL -10 481 74 2447 90 3 3 chr3 25199456 25199768 -192837390 + AluSx SINE Alu 1 312 0 494 219 174 7 chr3 25199938 25200093 -192837065 + MER5A DNA MER1_type 9 189 0 543 53 0 0 chr3 25200351 25200426 -192836732 + (TA)n Simple_repeat Simple_repeat 2 76 0 926 126 0 66 chr3 25200446 25200597 -192836561 - AluJo SINE Alu -171 141 1 213 121 0 0 chr3 25201089 25201122 -192836036 + (GA)n Simple_repeat Simple_repeat 1 33 0 3201 46 5 51 chr3 25201553 25201985 -192835173 - L1PA8 LINE L1 -10 6162 5751 24 0 0 0 chr3 25203150 25203174 -192833984 + AT_rich Low_complexity Low_complexity 1 24 0 971 175 45 35 chr3 25203412 25203612 -192833546 + MER3 DNA MER1_type 8 209 0 293 200 0 0 chr3 25203569 25203619 -192833539 - MER3 DNA MER1_type -119 90 41 * 2292 119 0 0 chr3 25204216 25204518 -192832640 - AluSx SINE Alu -9 303 2 2186 116 139 16 chr3 25206154 25206535 -192830623 + MSTA LTR MaLR 1 428 0 1586 154 16 96 chr3 25206538 25206812 -192830346 - L1MB7 LINE L1 -38 6146 5852 1850 121 0 43 chr3 25206812 25207093 -192830065 - AluSx SINE Alu -14 298 30 1586 154 16 96 chr3 25207093 25207149 -192830009 - L1MB7 LINE L1 -332 5852 5793 2196 115 6 16 chr3 25207149 25207462 -192829696 - AluSg SINE Alu 0 310 1 1586 154 16 96 chr3 25207462 25207475 -192829683 - L1MB7 LINE L1 -391 5793 5781 2451 147 29 44 chr3 25207475 25207543 -192829615 - L1MB2 LINE L1 -7 6164 6097 2236 147 86 15 chr3 25207543 25207939 -192829219 + MSTB LTR MaLR 1 424 -2 2332 94 3 3 chr3 25207939 25208246 -192828912 + AluSq SINE Alu 1 307 -6 2451 147 29 44 chr3 25208246 25208652 -192828506 - L1MB2 LINE L1 -72 6099 5696 1586 154 16 96 chr3 25208652 25208683 -192828475 - L1MB7 LINE L1 -402 5782 5800 1924 156 3 3 chr3 25208883 25209184 -192827974 + AluSx SINE Alu 1 301 -11 1716 253 60 61 chr3 25210652 25210866 -192826292 - L1MEd LINE L1 -5351 768 555 856 237 17 11 chr3 25210866 25211043 -192826115 + MER45A DNA AcHobo 1 178 0 1716 253 60 61 chr3 25211043 25211596 -192825562 - L1MEd LINE L1 -5564 555 2 214 191 0 0 chr3 25211665 25211707 -192825451 + T-rich Low_complexity Low_complexity 1 42 0 301 288 90 9 chr3 25211737 25211848 -192825310 - MIR SINE MIR -112 150 31 220 341 33 0 chr3 25212567 25212658 -192824500 + MIR3 SINE MIR 112 205 -3 2242 99 20 3 chr3 25213768 25214061 -192823097 + AluSx SINE Alu 1 298 -14 594 0 0 0 chr3 25264063 25264129 -192773029 + (TA)n Simple_repeat Simple_repeat 2 67 0 519 107 0 0 chr3 25264129 25264204 -192772954 - AluY SINE Alu -27 284 210 710 283 78 38 chr3 25264216 25264735 -192772423 + L1ME4a LINE L1 3875 4432 -1714 761 208 0 0 chr3 25264735 25264865 -192772293 + FLAM_A SINE Alu 1 130 -3 710 283 78 38 chr3 25264865 25265060 -192772098 + L1ME4a LINE L1 4432 4618 -1528 1111 110 6 0 chr3 25265079 25265243 -192771915 - L1MA1 LINE L1 -7 6295 6131 579 277 65 9 chr3 25265245 25265718 -192771440 + L1ME4a LINE L1 4967 5462 -700 3569 47 7 2 chr3 25265750 25266196 -192770962 - LTR7 LTR ERV1 -2 448 1 2372 84 39 16 chr3 25266196 25266577 -192770581 - HERVH LTR ERV1 0 7713 7324 1328 120 18 5 chr3 25266577 25266794 -192770364 - HERVH LTR ERV1 -1894 5819 5600 4161 137 0 1 chr3 25266795 25267458 -192769700 - HERVH LTR ERV1 -2564 5149 4488 3112 121 4 6 chr3 25267460 25267963 -192769195 - HERVH LTR ERV1 -3720 3993 3492 841 149 20 0 chr3 25267953 25268101 -192769057 - HERVH LTR ERV1 -4423 3290 3140 * 19235 89 11 27 chr3 25268095 25271131 -192766027 - HERVH LTR ERV1 -4726 2987 1 3234 42 10 105 chr3 25271133 25271628 -192765530 - LTR7 LTR ERV1 -2 448 1 903 284 40 49 chr3 25271634 25272081 -192765077 + L1ME4a LINE L1 5495 5937 -233 529 72 0 24 chr3 25272083 25272166 -192764992 + L1MA4 LINE L1 6214 6294 -6 3863 153 16 46 chr3 25272248 25273076 -192764082 + L1MB8 LINE L1 5376 6178 0 27 0 0 0 chr3 25273258 25273285 -192763873 + AT_rich Low_complexity Low_complexity 1 27 0 375 271 7 50 chr3 25273387 25273527 -192763631 + L1ME LINE L1 5506 5639 -482 908 258 98 48 chr3 25273528 25273947 -192763211 + MLT1H LTR MaLR 98 537 -12 285 267 20 0 chr3 25273957 25274058 -192763100 + L1ME LINE L1 5647 5749 -372 736 276 204 28 chr3 25274060 25274560 -192762598 + MLT1K LTR MaLR 1 588 0 4352 191 14 5 chr3 25275203 25276437 -192760721 + L1MB5 LINE L1 4903 6147 -27 270 0 0 0 chr3 25276450 25276480 -192760678 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1111 181 100 9 chr3 25276490 25276700 -192760458 + AluJo SINE Alu 83 311 -1 724 184 0 0 chr3 25276709 25276818 -192760340 - FLAM_A SINE Alu -33 109 1 297 239 55 9 chr3 25276965 25277074 -192760084 + L1ME4a LINE L1 6007 6120 -1 292 259 44 37 chr3 25277120 25277255 -192759903 + MLT1I LTR MaLR 21 155 -254 862 241 98 8 chr3 25277259 25277504 -192759654 - MLT1G1 LTR MaLR -7 588 322 1596 166 23 13 chr3 25278645 25278953 -192758205 + L1M3 LINE L1 5329 5639 -541 * 29792 92 13 9 chr3 25278949 25281603 -192755555 - L1PA8 LINE L1 0 6487 3847 269 26 26 0 chr3 25281603 25281641 -192755517 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 29792 92 13 9 chr3 25281641 25284693 -192752465 - L1PA8 LINE L1 -2640 3847 749 722 45 0 0 chr3 25284702 25284791 -192752367 + L1P3 LINE L1 5539 5627 -545 29 0 0 0 chr3 25285219 25285248 -192751910 + AT_rich Low_complexity Low_complexity 1 29 0 652 126 0 0 chr3 25286687 25286790 -192750368 - AluSp/q SINE Alu -1 312 210 1220 179 44 74 chr3 25287627 25287990 -192749168 - MER4C-int LTR ERV1 -1607 3273 2922 354 225 49 28 chr3 25288046 25288188 -192748970 - MER4C-int LTR ERV1 -1937 2943 2799 924 206 96 9 chr3 25288190 25288409 -192748749 + LTR49-int LTR ERV1 3300 3537 -2794 2993 158 52 80 chr3 25288441 25289152 -192748006 + LTR8 LTR ERV1 1 691 0 276 254 0 14 chr3 25289153 25289224 -192747934 - MER4C-int LTR ERV1 -3930 2401 2332 355 210 0 25 chr3 25289261 25289342 -192747816 - MER4C-int LTR ERV1 -4187 2144 2066 316 129 48 0 chr3 25289343 25289405 -192747753 - MER4C-int LTR ERV1 -4423 1908 1844 1067 156 81 137 chr3 25289451 25289823 -192747335 - MER4C-int LTR ERV1 -4609 1722 1372 410 180 57 41 chr3 25289913 25290035 -192747123 - MER4C-int LTR ERV1 -4918 1413 1290 254 213 197 0 chr3 25290042 25290103 -192747055 - tRNA-Glu-GAG tRNA tRNA 0 75 3 575 122 114 15 chr3 25290174 25290305 -192746853 - MER4C-int LTR ERV1 -5194 1137 994 200 128 0 26 chr3 25290499 25290538 -192746620 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 879 201 120 28 chr3 25290567 25290945 -192746213 - MER4C-int LTR ERV1 -6110 488 1 934 210 46 118 chr3 25290948 25291449 -192745709 - MER4C LTR ERV1 0 465 1 1103 214 5 0 chr3 25291449 25291659 -192745499 + LTR39 LTR ERV1 572 782 -1 389 229 31 104 chr3 25291875 25292067 -192745091 - MER5B DNA MER1_type 0 178 1 295 207 60 9 chr3 25293060 25293176 -192743982 - L1MC4 LINE L1 -1 8041 7920 2471 162 22 29 chr3 25293333 25293822 -192743336 - MLT1D LTR MaLR -8 497 12 979 236 65 87 chr3 25293914 25294363 -192742795 - L2 LINE L2 -1136 2178 1740 508 281 82 0 chr3 25295487 25295622 -192741536 + L3 LINE CR1 1061 1206 -371 246 349 31 11 chr3 25296277 25296538 -192740620 + L1M4 LINE L1 4904 5168 -978 789 325 63 21 chr3 25296784 25297163 -192739995 + LTR16C LTR ERVL 97 491 0 359 328 81 56 chr3 25297163 25297250 -192739908 + L1M4 LINE L1 5332 5415 -755 2445 84 0 0 chr3 25297250 25297558 -192739600 + AluY SINE Alu 1 308 -3 359 328 81 56 chr3 25297558 25297790 -192739368 + L1M4 LINE L1 5415 5659 -511 3072 276 158 28 chr3 25297837 25299651 -192737507 + L2 LINE L2 1261 3313 0 229 281 36 61 chr3 25299683 25299879 -192737279 + L1M4 LINE L1 5695 5885 -293 26 50 0 0 chr3 25299952 25299992 -192737166 + AT_rich Low_complexity Low_complexity 1 40 0 390 272 22 11 chr3 25300471 25300563 -192736595 - MIR SINE MIR -162 100 8 235 254 16 16 chr3 25300846 25300909 -192736249 - L2 LINE L2 -31 3241 3179 2805 10 0 0 chr3 25301159 25301466 -192735692 + AluYa5 SINE Alu 1 307 -4 3557 91 16 0 chr3 25301892 25302400 -192734758 - L1PA13 LINE L1 0 6814 6299 538 35 306 0 chr3 25302400 25302485 -192734673 - L1PA8 LINE L1 -28 6144 6034 20192 183 33 11 chr3 25302585 25308242 -192728916 - L1PA13 LINE L1 -550 6269 339 11419 144 7 20 chr3 25308240 25310118 -192727040 - L1PA12 LINE L1 -5577 2004 152 * 2035 147 3 0 chr3 25310692 25310992 -192726166 + AluJb SINE Alu 1 301 -11 272 163 20 0 chr3 25311233 25311282 -192725876 - MLT1L LTR MaLR -347 268 219 947 194 77 28 chr3 25311667 25311914 -192725244 + MIR SINE MIR 4 262 0 21 36 0 0 chr3 25312012 25312040 -192725118 + AT_rich Low_complexity Low_complexity 1 28 0 192 267 13 93 chr3 25312260 25312335 -192724823 - MIR3 SINE MIR -51 157 89 1008 171 6 6 chr3 25312710 25312886 -192724272 - MER5B DNA MER1_type -2 176 1 254 390 0 0 chr3 25313726 25313862 -192723296 - MER117 DNA MER1_type -33 164 29 230 0 33 0 chr3 25313942 25313972 -192723186 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 289 224 206 19 chr3 25314002 25314109 -192723049 - L2 LINE L2 -38 3275 3149 256 325 77 0 chr3 25314713 25314830 -192722328 - L2 LINE L2 -491 2823 2698 369 0 0 0 chr3 25314891 25314932 -192722226 + (CA)n Simple_repeat Simple_repeat 2 42 0 339 165 0 51 chr3 25314959 25315038 -192722120 + MER53 DNA DNA 115 189 0 203 297 135 14 chr3 25315077 25315225 -192721933 - L2 LINE L2 -735 2579 2414 1669 174 2 84 chr3 25315673 25316076 -192721082 + MLT1A2 LTR MaLR 1 370 -4 1331 213 10 43 chr3 25316170 25316470 -192720688 - AluJo SINE Alu -22 290 1 2032 150 6 12 chr3 25316886 25317227 -192719931 - MER44D DNA MER2_type 0 609 1 328 273 189 96 chr3 25317234 25317743 -192719415 - MLT1K LTR MaLR -31 557 2 269 286 156 5 chr3 25317805 25318029 -192719129 + L1MC4a LINE L1 5672 5929 -1879 26 88 0 0 chr3 25318146 25318214 -192718944 + AT_rich Low_complexity Low_complexity 1 68 0 1106 187 18 7 chr3 25318215 25318488 -192718670 - L1M4 LINE L1 -914 5232 4957 1068 258 89 35 chr3 25318692 25319087 -192718071 + MER77 LTR ERV1 181 596 -9 1384 261 10 41 chr3 25319176 25319594 -192717564 + MER77-int LTR ERV1 2 406 -3785 358 362 7 0 chr3 25319599 25319737 -192717421 + MER77-int LTR ERV1 298 436 -3755 2298 104 0 3 chr3 25320284 25320581 -192716577 - AluSg SINE Alu -14 296 1 2481 141 57 5 chr3 25321384 25321823 -192715335 - MER31A LTR ERV1 -23 462 1 329 327 9 0 chr3 25322334 25322444 -192714714 - L2 LINE L2 0 3272 3162 313 55 0 0 chr3 25322500 25322555 -192714603 - L1MB4 LINE L1 0 6180 6126 2310 57 0 7 chr3 25322555 25322848 -192714310 - L1PA7 LINE L1 0 6154 5860 246 252 36 36 chr3 25322960 25323099 -192714059 - L1M4 LINE L1 -2112 4034 3896 327 171 0 0 chr3 25323132 25323202 -192713956 + AluY SINE Alu 210 279 -22 606 14 0 0 chr3 25323202 25323273 -192713885 + (TA)n Simple_repeat Simple_repeat 1 71 0 958 253 35 65 chr3 25323291 25323648 -192713510 - L1M4 LINE L1 -2299 3847 3516 887 233 0 0 chr3 25323648 25323811 -192713347 - FAM SINE Alu -12 163 1 958 253 35 65 chr3 25323811 25324082 -192713076 - L1M4 LINE L1 -2630 3516 3238 471 276 26 26 chr3 25324137 25324293 -192712865 - L1ME1 LINE L1 -89 6077 5922 1743 103 17 21 chr3 25324315 25324606 -192712552 - L1MA2 LINE L1 0 7723 7434 3369 142 10 9 chr3 25324609 25325154 -192712004 - L1MA2 LINE L1 -514 7209 6666 2291 118 131 8 chr3 25325154 25325535 -192711623 - MSTA LTR MaLR 0 428 1 3369 142 10 9 chr3 25325535 25325917 -192711241 - L1MA2 LINE L1 -1057 6666 6286 2179 153 48 15 chr3 25325918 25326318 -192710840 + MSTA LTR MaLR 2 414 -14 12724 166 24 12 chr3 25326322 25327970 -192709188 - L1MA2 LINE L1 -1279 6286 4578 2422 74 0 10 chr3 25327970 25328266 -192708892 - AluY SINE Alu -18 293 1 12724 166 24 12 chr3 25328266 25329655 -192707503 - L1MA2 LINE L1 -2987 4578 3208 * 13892 153 52 6 chr3 25329653 25332447 -192704711 - L1MA2 LINE L1 -4614 2951 158 370 192 33 68 chr3 25332447 25332604 -192704554 - L1MC3 LINE L1 -408 5936 -1415 2061 116 3 28 chr3 25332756 25333075 -192704083 - AluSx SINE Alu -1 311 1 13345 121 25 22 chr3 25333269 25335351 -192701807 - Tigger1 DNA MER2_type -2 2416 327 1218 222 32 64 chr3 25335351 25335555 -192701603 + PABL_B LTR ERV1 1 210 -457 2148 128 3 0 chr3 25335555 25335867 -192701291 - AluSp SINE Alu 0 313 1 1218 222 32 64 chr3 25335867 25336205 -192700953 + PABL_B LTR ERV1 210 667 0 37305 200 18 10 chr3 25336218 25337548 -192699610 + PABL_B-int LTR ERV1 23 1342 -5780 2382 94 3 0 chr3 25337548 25337845 -192699313 + AluSp SINE Alu 1 298 -15 37305 200 18 10 chr3 25337845 25343438 -192693720 + PABL_B-int LTR ERV1 1342 7058 -64 1254 216 42 52 chr3 25343526 25344054 -192693104 + PABL_B LTR ERV1 1 667 0 1631 176 67 10 chr3 25344054 25344366 -192692792 - Tigger1 DNA MER2_type -2088 330 1 953 318 73 19 chr3 25344431 25344843 -192692315 + MLT1J LTR MaLR 3 436 -75 6170 122 192 97 chr3 25345055 25346605 -192690553 + pTR5 LTR ERV1 741 2438 0 185 264 22 88 chr3 25346695 25346786 -192690372 - MIR3 SINE MIR -29 179 95 273 255 156 28 chr3 25346835 25346976 -192690182 + MIR SINE MIR 91 249 -13 196 270 0 68 chr3 25347660 25347734 -192689424 + L2 LINE L2 3240 3308 -5 1675 61 17 26 chr3 25347736 25347966 -192689192 + L1PA10 LINE L1 5937 6164 -4 1571 277 82 21 chr3 25348183 25348656 -192688502 - MLT1J LTR MaLR -2 509 8 539 291 36 31 chr3 25348935 25349131 -192688027 + L2 LINE L2 3117 3313 0 24974 49 9 0 chr3 25349468 25349902 -192687256 + L1PA5 LINE L1 2408 2837 -3317 2393 86 3 0 chr3 25349902 25350204 -192686954 + AluY SINE Alu 1 303 -8 24974 49 9 0 chr3 25350204 25353516 -192683642 + L1PA5 LINE L1 2837 6154 0 3003 192 144 8 chr3 25354770 25355472 -192681686 + LTR1B LTR ERV1 30 826 0 466 250 60 0 chr3 25355891 25356007 -192681151 + MER5C DNA MER1_type 2 124 -200 1117 148 44 0 chr3 25356183 25356365 -192680793 - MER21A LTR ERV1 -17 914 725 1612 173 77 14 chr3 25356380 25356906 -192680252 - MER21B LTR ERV1 -283 580 1 261 61 0 0 chr3 25357004 25357037 -192680121 + MER58 DNA MER1_type 2380 2412 -8 610 274 42 18 chr3 25357122 25357290 -192679868 - MIR SINE MIR -70 192 21 229 214 0 0 chr3 25357527 25357569 -192679589 - MER58 DNA MER1_type -2146 274 233 188 386 0 0 chr3 25357950 25358020 -192679138 - L2 LINE L2 0 3272 3203 1298 211 121 47 chr3 25358488 25358802 -192678356 - MSTD LTR MaLR -4 392 46 2436 80 0 10 chr3 25358802 25359116 -192678042 - AluY SINE Alu 0 311 1 1298 211 121 47 chr3 25359116 25359166 -192677992 - MSTD LTR MaLR -350 46 1 711 183 0 0 chr3 25359166 25359292 -192677866 - MSTD-int LTR MaLR 0 1735 1610 997 223 125 60 chr3 25359405 25359722 -192677436 - MSTD LTR MaLR -4 392 46 2571 70 0 6 chr3 25359722 25360035 -192677123 - AluY SINE Alu 0 311 1 997 223 125 60 chr3 25360035 25360085 -192677073 - MSTD LTR MaLR -350 46 1 6260 227 84 43 chr3 25360085 25360236 -192676922 - MLT1B-int LTR MaLR 0 1735 1592 1800 140 87 34 chr3 25360236 25360592 -192676566 + THE1C LTR MaLR 1 375 0 6260 227 84 43 chr3 25360592 25362102 -192675056 - MLT1B-int LTR MaLR -143 1592 6 816 128 16 8 chr3 25362110 25362235 -192674923 + THE1C LTR MaLR 250 375 0 240 259 17 0 chr3 25362285 25362343 -192674815 - MER81 DNA DNA 0 114 56 1769 250 53 50 chr3 25362419 25362963 -192674195 + MLT1H1 LTR MaLR 1 546 -9 2193 149 25 63 chr3 25363602 25364184 -192672974 + MER39 LTR ERV1 1 707 0 3496 200 103 43 chr3 25365542 25366531 -192670627 + L1MC4 LINE L1 6995 8042 0 1792 257 29 60 chr3 25366541 25367119 -192670039 + L1MC4a LINE L1 5193 5230 -916 2121 151 48 13 chr3 25367119 25367496 -192669662 - MLT1B LTR MaLR 0 390 1 1792 257 29 60 chr3 25367496 25367661 -192669497 + L1MC4a LINE L1 5230 5399 -747 261 83 0 0 chr3 25367672 25367708 -192669450 + (TG)n Simple_repeat Simple_repeat 2 37 0 230 279 0 23 chr3 25367708 25367794 -192669364 + (TA)n Simple_repeat Simple_repeat 2 85 0 519 260 115 72 chr3 25368124 25368364 -192668794 - MLT1L LTR MaLR -8 503 320 369 0 0 0 chr3 25368364 25368405 -192668753 + (CA)n Simple_repeat Simple_repeat 1 41 0 519 260 115 72 chr3 25368405 25368615 -192668543 - MLT1L LTR MaLR -191 320 120 1034 253 180 13 chr3 25369025 25369409 -192667749 - LTR16C LTR ERVL 0 491 44 536 261 43 74 chr3 25369421 25369651 -192667507 - LTR16C LTR ERVL -217 274 52 439 223 33 25 chr3 25369834 25369955 -192667203 - MIR SINE MIR -44 218 97 1270 303 20 15 chr3 25370440 25370843 -192666315 - MLT1I LTR MaLR -4 405 1 337 296 96 9 chr3 25371317 25371432 -192665726 - L2 LINE L2 -9 3263 3139 1573 236 149 2 chr3 25371444 25371872 -192665286 - MLT1J LTR MaLR 0 511 21 519 311 98 50 chr3 25371915 25372455 -192664703 - L2 LINE L2 -251 3021 2458 25 0 0 0 chr3 25372682 25372707 -192664451 + AT_rich Low_complexity Low_complexity 1 25 0 182 241 139 25 chr3 25373061 25373140 -192664018 - L2 LINE L2 -2 3270 3183 678 224 76 33 chr3 25374442 25374749 -192662409 - LTR16C LTR ERVL 0 491 81 536 286 60 16 chr3 25374831 25375016 -192662142 + MIR SINE MIR 70 262 0 192 284 121 79 chr3 25375068 25375258 -192661900 - MIR3 SINE MIR -6 202 5 298 215 182 8 chr3 25375326 25375447 -192661711 + MER117 DNA MER1_type 4 145 -52 3351 73 49 9 chr3 25375625 25376052 -192661106 + MLT2A1 LTR ERVL 1 444 0 798 328 48 7 chr3 25376261 25376800 -192660358 + L1M4 LINE L1 4547 5107 -1039 270 291 153 66 chr3 25376801 25377042 -192660116 - LTR16B LTR ERVL -202 262 1 1011 177 117 53 chr3 25377435 25377734 -192659424 + MLT1H LTR MaLR 48 365 -184 355 221 19 48 chr3 25377737 25377841 -192659317 + MLT1H LTR MaLR 495 595 0 183 340 0 0 chr3 25377910 25377960 -192659198 - L2 LINE L2 0 3272 3223 * 803 270 115 4 chr3 25377926 25378152 -192659006 - MIR SINE MIR -10 252 2 353 255 45 51 chr3 25378514 25378671 -192658487 - L2 LINE L2 0 3313 3158 419 0 20 0 chr3 25379449 25379500 -192657658 + (TG)n Simple_repeat Simple_repeat 2 53 0 421 273 62 0 chr3 25379681 25379809 -192657349 + MIR3 SINE MIR 10 145 -63 1147 227 9 0 chr3 25380292 25380508 -192656650 - MER20 DNA MER1_type 0 219 2 818 252 40 24 chr3 25380541 25380791 -192656367 - LTR16C LTR ERVL -14 477 224 229 209 60 30 chr3 25383452 25383519 -192653639 - L2 LINE L2 -18 3295 3227 613 244 40 23 chr3 25384278 25384454 -192652704 + MIR SINE MIR 84 262 0 21 0 0 0 chr3 25384564 25384585 -192652573 + AT_rich Low_complexity Low_complexity 1 21 0 428 258 81 30 chr3 25384638 25384900 -192652258 - MLT1H1 LTR MaLR -6 589 186 292 266 101 0 chr3 25385080 25385159 -192651999 - MIR SINE MIR -160 102 16 795 260 174 27 chr3 25385211 25385715 -192651443 - MLT1G LTR MaLR -38 552 1 4152 124 36 9 chr3 25385758 25386449 -192650709 - L1MC1 LINE L1 0 6333 5624 276 232 14 0 chr3 25386605 25386674 -192650484 - MER113 DNA MER1_type? -448 73 4 225 65 0 0 chr3 25386771 25386802 -192650356 + (TGG)n Simple_repeat Simple_repeat 1 31 0 2240 125 0 3 chr3 25388164 25388477 -192648681 - AluSx SINE Alu 0 312 1 25 0 0 0 chr3 25388723 25388748 -192648410 + AT_rich Low_complexity Low_complexity 1 25 0 25 65 0 0 chr3 25389129 25389175 -192647983 + AT_rich Low_complexity Low_complexity 1 46 0 2847 204 27 15 chr3 25389698 25390359 -192646799 + L1MC3 LINE L1 7099 7767 -18 363 301 122 8 chr3 25390616 25390739 -192646419 - MIR3 SINE MIR -57 151 15 23 0 0 0 chr3 25391660 25391683 -192645475 + AT_rich Low_complexity Low_complexity 1 23 0 571 264 59 27 chr3 25391829 25392121 -192645037 - MLT1I LTR MaLR -2 407 73 236 317 17 0 chr3 25392234 25392294 -192644864 - L2 LINE L2 -55 3217 3157 204 40 0 0 chr3 25393042 25393067 -192644091 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 1190 199 49 8 chr3 25393085 25393331 -192643827 + MIR SINE MIR 6 261 -1 622 260 173 5 chr3 25393435 25393643 -192643515 + MIR SINE MIR 4 246 -16 183 229 38 127 chr3 25393862 25394019 -192643139 - L2 LINE L2 -457 2857 2715 860 254 75 13 chr3 25394101 25394329 -192642829 - MIR SINE MIR 0 262 21 707 227 51 23 chr3 25394718 25394894 -192642264 + MIR SINE MIR 34 214 -48 2087 174 21 9 chr3 25394972 25395144 -192642014 - L1MA10 LINE L1 -3 6331 6163 198 0 0 0 chr3 25395144 25395166 -192641992 + (TG)n Simple_repeat Simple_repeat 2 23 0 2087 174 21 9 chr3 25395166 25395413 -192641745 - L1MA10 LINE L1 -171 6163 5907 858 184 0 19 chr3 25396638 25396796 -192640362 + MER5B DNA MER1_type 6 160 -18 826 258 43 19 chr3 25396796 25397005 -192640153 - MIR SINE MIR -34 228 15 302 291 57 28 chr3 25397446 25397587 -192639571 + MIR3 SINE MIR 12 156 -52 998 239 46 18 chr3 25397608 25397888 -192639270 + MER102b DNA MER1_type 34 321 -20 520 115 58 0 chr3 25398698 25398785 -192638373 - L1MB2 LINE L1 -8 6163 6072 299 299 18 69 chr3 25398910 25399127 -192638031 - L1MB2 LINE L1 -1971 5837 5632 749 248 135 9 chr3 25399254 25399476 -192637682 + MIR SINE MIR 13 262 0 812 188 0 0 chr3 25400298 25400431 -192636727 + FLAM_A SINE Alu 1 133 0 488 311 71 14 chr3 25400790 25401002 -192636156 - L2 LINE L2 -15 3298 3075 4083 208 85 31 chr3 25401031 25401555 -192635603 + L1MB7 LINE L1 4206 4700 -1519 2044 118 25 0 chr3 25401555 25401834 -192635324 - AluSx SINE Alu -26 286 1 4083 208 85 31 chr3 25401834 25403212 -192633946 + L1MB7 LINE L1 4700 6219 0 246 62 0 0 chr3 25403212 25403244 -192633914 + (GGGA)n Simple_repeat Simple_repeat 3 34 0 697 301 94 37 chr3 25403288 25403794 -192633364 - L2 LINE L2 -189 3124 2601 350 338 8 60 chr3 25404019 25404152 -192633006 + L2 LINE L2 3127 3252 -20 402 151 27 14 chr3 25404270 25404343 -192632815 + MLT1J2 LTR MaLR 67 140 -310 349 179 0 83 chr3 25405556 25405640 -192631518 - MER69 DNA AcHobo -100 77 1 306 254 67 52 chr3 25405733 25405867 -192631291 - MIR SINE MIR -76 186 51 183 80 0 0 chr3 25406301 25406326 -192630832 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 212 286 0 48 chr3 25406327 25406390 -192630768 - L2 LINE L2 -15 3257 3198 1030 155 7 0 chr3 25406460 25406615 -192630543 - FAM SINE Alu -19 166 11 1559 209 22 32 chr3 25406626 25407027 -192630131 + MLT2C1 LTR ERVL 1 397 0 21 0 0 0 chr3 25408355 25408376 -192628782 + AT_rich Low_complexity Low_complexity 1 21 0 2720 169 58 80 chr3 25408492 25409196 -192627962 + LTR8 LTR ERV1 1 689 -2 207 278 56 14 chr3 25411416 25411488 -192625670 + MIR SINE MIR 16 90 -172 233 352 75 6 chr3 25411953 25412112 -192625046 + L1ME4a LINE L1 5395 5564 -557 390 228 134 39 chr3 25412182 25412414 -192624744 + L1ME4a LINE L1 5565 5818 -303 320 267 0 22 chr3 25412440 25412530 -192624628 - MIR SINE MIR -4 258 171 180 0 0 0 chr3 25412649 25412669 -192624489 + (A)n Simple_repeat Simple_repeat 1 20 0 474 148 0 83 chr3 25412692 25412800 -192624358 - Tigger7 DNA MER2_type 0 2487 2389 * 1070 241 72 0 chr3 25412798 25413047 -192624111 - Tigger7 DNA MER2_type -466 267 1 234 212 192 10 chr3 25413241 25413340 -192623818 + L1ME4a LINE L1 5981 6097 -24 236 271 143 76 chr3 25414365 25414575 -192622583 - L2 LINE L2 -32 3240 3017 554 245 168 13 chr3 25414588 25414743 -192622415 - MER5A DNA MER1_type -2 187 9 201 282 13 51 chr3 25414744 25414822 -192622336 - L2 LINE L2 -252 3020 2946 208 219 158 79 chr3 25415153 25415267 -192621891 + L2 LINE L2 3150 3272 0 841 283 53 0 chr3 25415306 25415550 -192621608 + MIR SINE MIR 6 262 0 798 141 88 35 chr3 25416136 25416306 -192620852 - MER3 DNA MER1_type 0 209 31 192 321 99 29 chr3 25416863 25417106 -192620052 - L2 LINE L2 -555 2759 2500 361 167 269 0 chr3 25417547 25417655 -192619503 + MIR SINE MIR 120 256 -6 379 258 127 9 chr3 25419087 25419300 -192617858 - L1ME4a LINE L1 -28 6093 5856 1239 259 88 5 chr3 25419336 25419733 -192617425 - LTR16A LTR ERVL 0 450 21 390 290 169 11 chr3 25419861 25420044 -192617114 - MIR SINE MIR -17 245 34 22 0 0 0 chr3 25420656 25420678 -192616480 + AT_rich Low_complexity Low_complexity 1 22 0 230 257 14 14 chr3 25421148 25421218 -192615940 + CT-rich Low_complexity Low_complexity 1 70 0 188 311 0 0 chr3 25421492 25421537 -192615621 + L2 LINE L2 3258 3302 -11 276 198 154 11 chr3 25422877 25422968 -192614190 - MER112 DNA MER1_type -7 253 150 2376 104 3 0 chr3 25422970 25423277 -192613881 + AluSx SINE Alu 1 308 -4 258 214 265 10 chr3 25424236 25424334 -192612824 + MER5A DNA MER1_type 44 166 -23 * 573 208 0 0 chr3 25424259 25424360 -192612798 - MER5A DNA MER1_type -80 109 9 26 0 0 0 chr3 25424531 25424557 -192612601 + AT_rich Low_complexity Low_complexity 1 26 0 189 205 26 0 chr3 25424671 25424710 -192612448 - L2 LINE L2 0 3313 3274 270 266 11 0 chr3 25425084 25425095 -192612063 - L1MA10 LINE L1 -5 6329 6319 2701 210 64 29 chr3 25425095 25426379 -192610779 - L1ME2 LINE L1 -9 6155 4834 336 291 47 17 chr3 25427598 25427770 -192609388 - L1ME4a LINE L1 -1 6120 5944 33 25 0 0 chr3 25427936 25427976 -192609182 + AT_rich Low_complexity Low_complexity 1 40 0 646 185 64 36 chr3 25428084 25428318 -192608840 + MER106B DNA MER1_type 1 1059 0 4561 169 41 5 chr3 25428786 25430014 -192607144 - L1MB7 LINE L1 -7 6177 4903 234 250 50 0 chr3 25430522 25430582 -192606576 - L2 LINE L2 -1391 1923 1861 800 158 148 10 chr3 25430586 25430782 -192606376 + MLT2C1 LTR ERVL 5 227 -170 398 228 22 0 chr3 25430780 25430872 -192606286 + MLT2C1 LTR ERVL 331 424 -40 * 211 259 23 38 chr3 25430872 25431003 -192606155 + (CATATA)n Simple_repeat Simple_repeat 2 130 0 * 327 201 57 13 chr3 25430909 25431068 -192606090 + (TA)n Simple_repeat Simple_repeat 1 166 0 519 17 0 0 chr3 25431068 25431128 -192606030 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 23 33 0 0 chr3 25431292 25431322 -192605836 + AT_rich Low_complexity Low_complexity 1 30 0 332 267 163 75 chr3 25432473 25432780 -192604378 - L1MC4a LINE L1 -1754 6054 5721 2140 105 10 0 chr3 25432791 25433085 -192604073 + AluSx SINE Alu 6 302 -10 227 263 77 86 chr3 25433251 25433460 -192603698 - L2 LINE L2 -166 3106 2900 544 321 101 17 chr3 25433487 25433833 -192603325 - L2 LINE L2 -468 2846 2472 590 284 103 23 chr3 25433903 25434281 -192602877 - L1MC4a LINE L1 -439 5682 5274 910 186 25 101 chr3 25435912 25436149 -192601009 - MER20 DNA MER1_type 0 219 1 904 173 98 0 chr3 25439473 25439673 -192597485 + L1PA16 LINE L1 5968 6184 0 384 284 86 41 chr3 25439696 25439893 -192597265 + MIR SINE MIR 51 256 -6 190 292 139 23 chr3 25439995 25440211 -192596947 + L2 LINE L2 2013 2253 -1061 341 348 65 16 chr3 25440233 25440417 -192596741 + L2 LINE L2 2555 2747 -567 185 259 86 17 chr3 25440571 25440629 -192596529 + L2 LINE L2 2916 2977 -337 190 250 16 47 chr3 25441836 25441900 -192595258 + L2 LINE L2 3200 3261 -11 215 268 89 27 chr3 25442743 25442855 -192594303 + MIR3 SINE MIR 54 172 -36 886 245 29 29 chr3 25442935 25443180 -192593978 + MIR SINE MIR 13 257 -5 292 151 0 19 chr3 25443255 25443308 -192593850 + L2 LINE L2 2420 2471 -843 1782 140 59 9 chr3 25443308 25443629 -192593529 + MLT1B LTR MaLR 1 337 -53 2359 87 0 0 chr3 25443673 25443973 -192593185 - AluSx SINE Alu -12 300 1 897 268 96 25 chr3 25444002 25444136 -192593022 + L2 LINE L2 2935 3058 -255 390 100 0 0 chr3 25444136 25444196 -192592962 + (CA)n Simple_repeat Simple_repeat 1 60 0 897 268 96 25 chr3 25444196 25444415 -192592743 + L2 LINE L2 3058 3313 0 24 32 0 0 chr3 25445311 25445342 -192591816 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr3 25445738 25445763 -192591395 + AT_rich Low_complexity Low_complexity 1 25 0 1952 137 27 7 chr3 25445863 25446162 -192590996 - AluJo SINE Alu -7 305 1 2662 148 8 20 chr3 25446968 25447462 -192589696 + L1MB8 LINE L1 5685 6172 -6 586 279 100 16 chr3 25447956 25448558 -192588600 - L1MC/D LINE L1 -447 5795 5124 338 204 258 0 chr3 25448581 25448674 -192588484 + MER45A DNA AcHobo 62 178 0 1020 284 147 29 chr3 25448685 25449908 -192587250 - L1MC/D LINE L1 -1127 5019 3653 344 175 25 50 chr3 25449922 25450002 -192587156 + MER20 DNA MER1_type 142 219 0 226 308 64 29 chr3 25450362 25450706 -192586452 - L1MC/D LINE L1 -2932 3214 2859 2089 41 0 65 chr3 25451001 25451291 -192585867 + L1PA8 LINE L1 5902 6172 0 285 187 224 50 chr3 25451366 25451607 -192585551 + L1ME4a LINE L1 5690 5972 -149 364 308 118 34 chr3 25451762 25452119 -192585039 + L1MC4a LINE L1 5543 5929 -1879 21 0 0 0 chr3 25452283 25452304 -192584854 + AT_rich Low_complexity Low_complexity 1 21 0 27678 35 1 0 chr3 25452941 25457094 -192580064 - L1PA4 LINE L1 -3 6152 1997 460 303 115 49 chr3 25458143 25458595 -192578563 + L2 LINE L2 1754 2235 -1079 2379 73 0 0 chr3 25458737 25459026 -192578132 + AluY SINE Alu 3 291 -20 332 225 42 0 chr3 25460213 25460284 -192576874 - L2 LINE L2 0 3313 3240 215 81 54 0 chr3 25461772 25461809 -192575349 + (CATA)n Simple_repeat Simple_repeat 2 40 0 21 82 0 0 chr3 25462041 25462090 -192575068 + AT_rich Low_complexity Low_complexity 1 49 0 183 129 0 0 chr3 25462185 25462216 -192574942 + (CATATA)n Simple_repeat Simple_repeat 6 36 0 443 250 40 80 chr3 25462618 25462794 -192574364 - MIR SINE MIR -81 181 13 201 257 168 44 chr3 25462776 25462889 -192574269 + L2 LINE L2 3146 3272 0 * 185 0 40 0 chr3 25462928 25462953 -192574205 + (TTA)n Simple_repeat Simple_repeat 3 28 0 16418 38 4 1 chr3 25462953 25465709 -192571449 - L1PA5 LINE L1 -18 6136 3373 13543 166 37 96 chr3 25465746 25468952 -192568206 - L1PA15 LINE L1 -71 6745 3352 189 0 0 0 chr3 25468952 25468973 -192568185 + (TA)n Simple_repeat Simple_repeat 1 21 0 8820 33 13 0 chr3 25468977 25470811 -192566347 - L1PA3 LINE L1 -3 6152 4305 13543 166 37 96 chr3 25470811 25472392 -192564766 - L1PA15 LINE L1 -3467 3349 2238 439 298 161 59 chr3 25472637 25473546 -192563612 - L2 LINE L2 0 3272 2250 213 301 175 0 chr3 25474116 25474219 -192562939 + L2 LINE L2 3193 3313 0 25 31 0 0 chr3 25475310 25475342 -192561816 + AT_rich Low_complexity Low_complexity 1 32 0 2452 71 0 0 chr3 25475536 25475832 -192561326 - AluY SINE Alu -15 296 1 2364 81 0 7 chr3 25475947 25476243 -192560915 - AluY SINE Alu -17 294 1 428 243 28 93 chr3 25476520 25476734 -192560424 - L1MC4 LINE L1 -4 8038 7839 339 343 22 0 chr3 25476769 25476903 -192560255 - MIR SINE MIR 0 262 126 1417 224 119 17 chr3 25478757 25479118 -192558040 + LTR16A LTR ERVL 41 438 -12 957 262 56 4 chr3 25479980 25480213 -192556945 + MIR SINE MIR 1 245 -17 324 0 0 0 chr3 25481542 25481578 -192555580 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 886 196 44 20 chr3 25481968 25482172 -192554986 - MER3 DNA MER1_type 0 209 1 272 235 59 0 chr3 25482240 25482325 -192554833 - L1MB7 LINE L1 0 6184 6095 705 181 9 109 chr3 25482326 25482536 -192554622 - MER105 DNA DNA -13 191 3 1769 162 7 36 chr3 25483144 25483453 -192553705 + AluJo SINE Alu 1 300 -12 23 0 0 0 chr3 25483571 25483594 -192553564 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 25483736 25483758 -192553400 + AT_rich Low_complexity Low_complexity 1 22 0 425 284 113 24 chr3 25484237 25484529 -192552629 - L1M4 LINE L1 -2876 3270 2953 813 181 88 6 chr3 25484946 25485106 -192552052 + MER45A DNA AcHobo 2 174 -4 1470 177 0 15 chr3 25485336 25485607 -192551551 + Tigger7 DNA MER2_type 1 267 -2220 479 216 20 0 chr3 25485603 25485705 -192551453 + Tigger7 DNA MER2_type 2384 2487 0 * 622 253 5 75 chr3 25485926 25486116 -192551042 + MIR SINE MIR 66 243 -19 295 222 9 13 chr3 25486420 25486528 -192550630 + MIR SINE MIR 2 149 -113 305 333 93 43 chr3 25488814 25489072 -192548086 - L3b LINE CR1 -16 1567 1297 269 339 133 48 chr3 25490300 25490849 -192546309 - L2 LINE L2 -98 3174 2591 209 333 70 74 chr3 25491102 25491519 -192545639 - L2 LINE L2 -1298 2016 1602 292 222 0 14 chr3 25493128 25493200 -192543958 + Charlie8 DNA MER1_type 121 191 -2226 232 260 39 0 chr3 25493304 25493381 -192543777 + Charlie8 DNA MER1_type 330 409 -2008 263 172 16 47 chr3 25493456 25493520 -192543638 + Charlie8 DNA MER1_type 2356 2417 0 25 0 0 0 chr3 25497259 25497284 -192539874 + GC_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr3 25497496 25497526 -192539632 + GC_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 25497716 25497737 -192539421 + AT_rich Low_complexity Low_complexity 1 21 0 207 242 20 46 chr3 25497748 25497901 -192539257 + (CGGGG)n Simple_repeat Simple_repeat 5 153 0 328 210 49 12 chr3 25500098 25500179 -192536979 + L2 LINE L2 3188 3271 -1 614 238 44 11 chr3 25501688 25501869 -192535289 - L1ME1 LINE L1 -10 6156 5970 556 297 63 9 chr3 25503965 25504187 -192532971 + MIR SINE MIR 8 241 -21 603 238 0 0 chr3 25504452 25504578 -192532580 - MER94 DNA DNA -8 126 1 28 0 0 0 chr3 25505397 25505425 -192531733 + AT_rich Low_complexity Low_complexity 1 28 0 393 272 111 22 chr3 25505561 25505741 -192531417 - MIR SINE MIR -54 208 13 989 222 25 66 chr3 25507338 25507760 -192529398 - L1ME1 LINE L1 -530 5640 5237 296 287 0 0 chr3 25507926 25508034 -192529124 + (TA)n Simple_repeat Simple_repeat 2 109 0 861 279 75 7 chr3 25508034 25508486 -192528672 - L1ME1 LINE L1 -902 5244 4762 1238 246 77 35 chr3 25508491 25508998 -192528160 + L1ME3A LINE L1 5638 6165 -5 419 246 187 22 chr3 25509730 25509864 -192527294 + MER5B DNA MER1_type 23 178 0 268 287 116 31 chr3 25513586 25513726 -192523432 - MIR SINE MIR -61 147 35 302 274 65 70 chr3 25514539 25514769 -192522389 + L2 LINE L2 1612 1840 -1474 185 338 83 22 chr3 25514820 25515048 -192522110 + L2 LINE L2 2150 2391 -923 2241 126 0 0 chr3 25515432 25515733 -192521425 + AluSx SINE Alu 1 301 -11 267 103 0 0 chr3 25515737 25515776 -192521382 + (TG)n Simple_repeat Simple_repeat 1 39 0 2849 85 3 5 chr3 25517541 25517917 -192519241 + THE1C LTR MaLR 1 375 0 1242 140 93 23 chr3 25518906 25519163 -192517995 + ORSL DNA AcHobo 1 275 0 351 246 15 0 chr3 25520520 25520624 -192516534 + MIR SINE MIR 106 210 -52 686 225 30 6 chr3 25521016 25521185 -192515973 - L1MC5 LINE L1 -58 7903 7731 355 224 59 24 chr3 25521203 25521373 -192515785 - L1MC5 LINE L1 -285 7676 7501 581 253 104 11 chr3 25522181 25522363 -192514795 + MIR SINE MIR 47 245 -17 2956 270 84 5 chr3 25522838 25523822 -192513336 + L2 LINE L2 1481 2542 -772 1523 96 0 0 chr3 25523977 25524174 -192512984 + AluSg/x SINE Alu 107 303 -9 22 80 0 0 chr3 25524240 25524290 -192512868 + AT_rich Low_complexity Low_complexity 1 50 0 1802 146 65 3 chr3 25524674 25525010 -192512148 + MER46B DNA MER2_type 1 232 -4 21 36 0 0 chr3 25525071 25525099 -192512059 + AT_rich Low_complexity Low_complexity 1 28 0 202 345 92 25 chr3 25525476 25525595 -192511563 - MIR3 SINE MIR -78 130 4 25 75 0 0 chr3 25526452 25526505 -192510653 + AT_rich Low_complexity Low_complexity 1 53 0 214 195 0 0 chr3 25526575 25526616 -192510542 + (TA)n Simple_repeat Simple_repeat 2 42 0 21 71 0 0 chr3 25527594 25527636 -192509522 + AT_rich Low_complexity Low_complexity 1 42 0 1602 188 24 7 chr3 25527639 25527932 -192509226 - AluJo SINE Alu -14 298 1 21 0 0 0 chr3 25528488 25528509 -192508649 + AT_rich Low_complexity Low_complexity 1 21 0 1429 258 113 26 chr3 25530249 25530797 -192506361 - MLT1G LTR MaLR -18 572 17 26 0 0 0 chr3 25531831 25531857 -192505301 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr3 25531977 25532008 -192505150 + AT_rich Low_complexity Low_complexity 1 31 0 415 237 62 62 chr3 25532128 25532500 -192504658 - L1M4 LINE L1 -2739 3905 3534 22 88 0 0 chr3 25533152 25533209 -192503949 + AT_rich Low_complexity Low_complexity 1 57 0 25 51 0 0 chr3 25533261 25533300 -192503858 + AT_rich Low_complexity Low_complexity 1 39 0 200 185 0 37 chr3 25535556 25535610 -192501548 + A-rich Low_complexity Low_complexity 6 57 0 3992 202 35 18 chr3 25536502 25537464 -192499694 - L1M4 LINE L1 -4927 1615 637 2455 70 0 0 chr3 25537771 25538070 -192499088 - AluY SINE Alu -12 299 1 2836 168 62 9 chr3 25538240 25538816 -192498342 - L1MB7 LINE L1 -16 6168 5562 555 226 120 51 chr3 25539114 25539331 -192497827 + MIR SINE MIR 31 262 0 2258 96 7 0 chr3 25539485 25539776 -192497382 - AluY SINE Alu -18 293 1 555 127 136 0 chr3 25540434 25540544 -192496614 - MER20 DNA MER1_type 0 219 95 228 244 228 8 chr3 25540680 25540807 -192496351 + MER103 DNA DNA 3 157 -9 314 206 32 0 chr3 25540863 25540926 -192496232 - MIR3 SINE MIR -54 154 90 247 290 0 43 chr3 25540957 25541026 -192496132 - L2 LINE L2 -25 3247 3182 438 344 78 22 chr3 25541438 25541668 -192495490 + MIR SINE MIR 16 258 -4 311 286 121 52 chr3 25541684 25542048 -192495110 - L2 LINE L2 -1360 1954 1566 271 361 113 4 chr3 25543513 25543743 -192493415 + L2 LINE L2 2226 2480 -834 188 386 29 0 chr3 25544079 25544149 -192493009 + L2 LINE L2 3108 3179 -93 197 235 39 20 chr3 25544156 25544207 -192492951 + MIR SINE MIR 207 258 -4 377 357 70 11 chr3 25544508 25544693 -192492465 + MIR SINE MIR 24 219 -43 1374 184 83 12 chr3 25544725 25545052 -192492106 + MLT1A1 LTR MaLR 4 353 -12 201 207 0 35 chr3 25545782 25545840 -192491318 + T-rich Low_complexity Low_complexity 5 60 0 31 0 0 0 chr3 25647031 25647062 -192390096 + AT_rich Low_complexity Low_complexity 1 31 0 245 243 10 107 chr3 25647212 25647315 -192389843 + MIR3 SINE MIR 112 204 -4 779 211 40 60 chr3 25647352 25647551 -192389607 + MER58C DNA MER1_type 2 196 -19 308 311 44 7 chr3 25647783 25647918 -192389240 + MER91C DNA MER1_type 1 140 0 713 270 132 48 chr3 25650228 25650583 -192386575 + L2 LINE L2 2929 3313 0 2268 146 9 6 chr3 25651057 25651393 -192385765 - MER1B DNA MER1_type 0 337 1 1953 205 54 14 chr3 25652623 25653067 -192384091 - MLT1C LTR MaLR 0 467 6 255 319 177 0 chr3 25654131 25654244 -192382914 + MIR SINE MIR 92 224 -38 284 364 20 10 chr3 25654310 25654461 -192382697 - MIR SINE MIR -65 143 25 296 263 131 0 chr3 25654694 25654793 -192382365 + MIR SINE MIR 86 197 -65 2265 100 0 0 chr3 25655786 25656089 -192381069 - AluSg SINE Alu 0 303 1 342 308 29 52 chr3 25657253 25657488 -192379670 + MIR SINE MIR 3 236 -26 2455 72 0 10 chr3 25657710 25658017 -192379141 + L1PA7 LINE L1 5851 6154 0 21 0 0 0 chr3 25658303 25658324 -192378834 + AT_rich Low_complexity Low_complexity 1 21 0 273 298 21 21 chr3 25658834 25658928 -192378230 + MER5A DNA MER1_type 26 119 -70 2899 89 38 23 chr3 25658950 25659268 -192377890 - L1MA3 LINE L1 0 6305 5993 2655 43 0 0 chr3 25659268 25659568 -192377590 - AluY SINE Alu -11 300 1 2899 89 38 23 chr3 25659568 25659847 -192377311 - L1MA3 LINE L1 -312 5993 5525 1379 188 56 24 chr3 25659847 25660135 -192377023 - AluJo SINE Alu -3 309 13 876 175 0 0 chr3 25660152 25660306 -192376852 - FAM SINE Alu -22 163 10 196 179 0 26 chr3 25660313 25660352 -192376806 - MER5A DNA MER1_type -108 81 44 393 310 91 21 chr3 25660732 25660919 -192376239 + MIR3 SINE MIR 6 205 -3 2980 104 30 14 chr3 25661700 25662132 -192375026 + L1PB4 LINE L1 5718 6156 0 246 289 36 24 chr3 25662452 25662535 -192374623 + MIR SINE MIR 34 117 -91 186 43 0 0 chr3 25663111 25663134 -192374024 + (TTATA)n Simple_repeat Simple_repeat 4 26 0 26 0 0 0 chr3 25663884 25663910 -192373248 + AT_rich Low_complexity Low_complexity 1 26 0 2950 166 43 61 chr3 25664026 25664648 -192372510 + LTR36 LTR ERV1 1 611 0 1585 183 9 56 chr3 25665724 25666046 -192371112 - AluJo SINE Alu -5 307 1 694 277 15 30 chr3 25666049 25666251 -192370907 + MIR SINE MIR 37 235 -27 186 71 0 0 chr3 25666899 25666927 -192370231 + (TAAAAA)n Simple_repeat Simple_repeat 1 28 0 183 80 0 0 chr3 25667157 25667182 -192369976 + (T)n Simple_repeat Simple_repeat 1 25 0 2394 103 0 3 chr3 25667632 25667944 -192369214 + AluSx SINE Alu 2 312 0 750 242 167 43 chr3 25668340 25668824 -192368334 + MLT1H1 LTR MaLR 17 555 0 227 203 51 17 chr3 25669309 25669368 -192367790 - MER91B DNA MER1_type -42 148 88 403 287 230 14 chr3 25670177 25670386 -192366772 + MIR SINE MIR 9 262 0 22 0 0 0 chr3 25670391 25670413 -192366745 + AT_rich Low_complexity Low_complexity 1 22 0 266 239 141 0 chr3 25670729 25670821 -192366337 - MIR SINE MIR -16 246 142 600 238 24 53 chr3 25672403 25672609 -192364549 + MIR SINE MIR 63 262 0 505 254 129 49 chr3 25672743 25672815 -192364343 + L1ME4a LINE L1 5740 5805 -316 2121 118 0 23 chr3 25672815 25673119 -192364039 - AluSx SINE Alu -11 301 5 505 254 129 49 chr3 25673119 25673396 -192363762 + L1ME4a LINE L1 5805 6117 -4 313 244 0 13 chr3 25673881 25673959 -192363199 - MIR3 SINE MIR -9 199 123 520 231 27 34 chr3 25674927 25675074 -192362084 + MIR SINE MIR 109 254 -8 671 165 132 6 chr3 25675192 25675348 -192361810 - MER5A DNA MER1_type -6 183 4 232 221 235 0 chr3 25677253 25677321 -192359837 - L2 LINE L2 0 3272 3189 208 222 44 89 chr3 25677385 25677475 -192359683 - MER5A DNA MER1_type -56 133 48 1719 197 23 0 chr3 25678565 25678865 -192358293 - AluJo SINE Alu 0 312 6 1928 151 0 0 chr3 25678957 25679248 -192357910 + AluJb SINE Alu 5 295 -17 335 255 135 73 chr3 25679532 25679596 -192357562 + MLT1L LTR MaLR 215 274 -341 936 156 27 11 chr3 25679596 25679782 -192357376 + MER53 DNA DNA 1 189 0 335 255 135 73 chr3 25679782 25679976 -192357182 + MLT1L LTR MaLR 274 489 -126 423 313 81 19 chr3 25679976 25680136 -192357022 - MER5B DNA MER1_type -2 176 7 341 183 76 20 chr3 25681390 25681479 -192355679 + L1MC4a LINE L1 6285 6371 -1437 2286 147 3 29 chr3 25681479 25681825 -192355333 + MER1B DNA MER1_type 1 337 0 311 330 0 22 chr3 25682448 25682539 -192354619 - MER91A DNA MER1_type -40 156 68 279 108 0 0 chr3 25682704 25682741 -192354417 + MSTA LTR MaLR 1 37 -391 1687 176 141 3 chr3 25682741 25683110 -192354048 + MSTA LTR MaLR 9 428 0 9875 169 29 3 chr3 25683110 25684718 -192352440 + MSTA-int LTR MaLR 1 1649 -2 2232 119 182 0 chr3 25684720 25685082 -192352076 + MSTA LTR MaLR 1 428 0 25 0 0 0 chr3 25685923 25685948 -192351210 + AT_rich Low_complexity Low_complexity 1 25 0 359 244 12 0 chr3 25686854 25686936 -192350222 + MLT1L LTR MaLR 170 252 -363 498 199 173 58 chr3 25686977 25687168 -192349990 + MLT1L LTR MaLR 341 553 -62 1370 142 0 27 chr3 25688129 25688354 -192348804 - AluJo SINE Alu -8 304 86 3689 274 111 24 chr3 25690228 25690332 -192346826 - HAL1 LINE L1 -60 2447 2353 191 59 0 29 chr3 25690332 25690366 -192346792 + (TCTA)n Simple_repeat Simple_repeat 1 33 0 1544 173 21 32 chr3 25690366 25690650 -192346508 - AluJb SINE Alu -31 281 1 3689 274 111 24 chr3 25690650 25691390 -192345768 - HAL1 LINE L1 -154 2353 1679 2309 94 0 0 chr3 25691390 25691687 -192345471 - AluSx SINE Alu -15 297 1 3689 274 111 24 chr3 25691687 25693055 -192344103 - HAL1 LINE L1 -828 1679 2 6627 128 68 10 chr3 25693399 25694563 -192342595 + Tigger3b DNA MER2_type 1 1231 0 1590 153 0 0 chr3 25694683 25694919 -192342239 + AluSx SINE Alu 1 236 -76 213 39 0 0 chr3 25694934 25694960 -192342198 + (A)n Simple_repeat Simple_repeat 1 26 0 21 82 0 0 chr3 25695235 25695284 -192341874 + AT_rich Low_complexity Low_complexity 1 49 0 2663 243 77 35 chr3 25696021 25696996 -192340162 - L2 LINE L2 -256 3057 2038 625 326 158 18 chr3 25697324 25697717 -192339441 + LTR16A LTR ERVL 1 448 -2 4333 195 46 6 chr3 25698059 25699634 -192337524 - L1MB7 LINE L1 -5 6677 5040 3371 256 24 28 chr3 25699657 25700806 -192336352 - L1MB7 LINE L1 -4543 2103 960 1096 238 125 7 chr3 25700826 25701129 -192336029 - L1MB7 LINE L1 -6187 355 17 375 311 46 38 chr3 25701248 25701668 -192335490 - L1MC/D LINE L1 -374 5747 5334 1563 231 127 65 chr3 25702316 25702487 -192334671 + MLT1E2 LTR MaLR 4 163 -463 1608 46 0 0 chr3 25702487 25702684 -192334474 - L1PA4 LINE L1 -3 6152 5956 1563 231 127 65 chr3 25702684 25703093 -192334065 + MLT1E2 LTR MaLR 163 620 -6 556 286 132 42 chr3 25703095 25703560 -192333598 - L1MC/D LINE L1 -2757 3389 2875 538 287 97 34 chr3 25703659 25704011 -192333147 - HAL1 LINE L1 -855 1652 1279 291 271 186 43 chr3 25704611 25704751 -192332407 - MIR SINE MIR -55 207 48 1687 112 9 124 chr3 25704778 25705144 -192332014 + AluSx SINE Alu 1 302 0 25 0 0 0 chr3 25705153 25705178 -192331980 + AT_rich Low_complexity Low_complexity 1 25 0 224 186 115 97 chr3 25705360 25705473 -192331685 + L2 LINE L2 3148 3262 -10 946 184 203 0 chr3 25705510 25705776 -192331382 - MER33 DNA MER1_type 0 324 5 2414 90 0 3 chr3 25706351 25706662 -192330496 + AluSx SINE Alu 1 310 -2 716 182 122 0 chr3 25706714 25706862 -192330296 + AluJo SINE Alu 1 166 -146 1019 186 6 11 chr3 25706863 25707040 -192330118 + AluJb SINE Alu 109 284 -28 1219 117 34 0 chr3 25707065 25707244 -192329914 - MER2 DNA MER2_type -160 185 1 679 264 39 35 chr3 25707602 25707856 -192329302 + LTR16A LTR ERVL 12 266 -184 2434 108 19 0 chr3 25708688 25709048 -192328110 + L1PA13 LINE L1 5786 6152 -11 191 304 65 58 chr3 25709135 25709273 -192327885 - L2 LINE L2 -454 2860 2722 251 326 39 23 chr3 25709405 25709534 -192327624 + MIR3 SINE MIR 33 163 -45 407 296 99 56 chr3 25709780 25709922 -192327236 + MER91A DNA MER1_type 29 176 -20 536 177 192 0 chr3 25710839 25710969 -192326189 - MIR SINE MIR -85 177 23 209 284 0 15 chr3 25711820 25711887 -192325271 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 1935 154 39 3 chr3 25711970 25712301 -192324857 + MER2 DNA MER2_type 2 344 0 285 206 48 16 chr3 25713209 25713272 -192323886 + L2 LINE L2 3249 3313 0 220 302 0 0 chr3 25713756 25713809 -192323349 - MIR3 SINE MIR -11 197 145 202 305 67 19 chr3 25716735 25716840 -192320318 - MIR3 SINE MIR -9 199 90 2259 87 14 0 chr3 25717583 25717870 -192319288 - AluSc SINE Alu -15 294 4 21 36 0 0 chr3 25717906 25717934 -192319224 + AT_rich Low_complexity Low_complexity 1 28 0 265 313 12 0 chr3 25718630 25718710 -192318448 + MIR3 SINE MIR 122 202 -6 330 244 169 41 chr3 25719728 25719900 -192317258 - L2 LINE L2 0 3313 3120 693 183 57 118 chr3 25720068 25720314 -192316844 + L2 LINE L2 3076 3306 -7 781 289 118 20 chr3 25720359 25720799 -192316359 + L2 LINE L2 1536 2018 -1296 207 250 0 78 chr3 25720798 25720862 -192316296 + L2 LINE L2 3208 3266 -6 * 194 135 0 115 chr3 25721611 25721663 -192315495 + L2 LINE L2 3227 3272 0 23 0 0 0 chr3 25723916 25723939 -192313219 + AT_rich Low_complexity Low_complexity 1 23 0 197 270 79 0 chr3 25723972 25724035 -192313123 + L3 LINE CR1 321 388 -1189 418 341 7 0 chr3 25724239 25724377 -192312781 + MIR3 SINE MIR 67 205 -3 804 164 6 18 chr3 25724445 25724610 -192312548 + L1MA5 LINE L1 6133 6295 -5 317 291 152 93 chr3 25724653 25725082 -192312076 + L3 LINE CR1 750 1203 -374 218 319 101 65 chr3 25725211 25725380 -192311778 + L3 LINE CR1 1397 1571 -6 259 273 18 36 chr3 25725549 25725659 -192311499 + CT-rich Low_complexity Low_complexity 1 108 0 1643 190 0 24 chr3 25725995 25726290 -192310868 + AluJb SINE Alu 1 288 -24 1880 247 78 2 chr3 25727338 25727905 -192309253 + L1M4 LINE L1 4457 5066 -1080 2198 157 40 71 chr3 25727907 25728357 -192308801 + MER77 LTR ERV1 1 436 -169 10619 119 83 142 chr3 25728357 25729084 -192308074 - Tigger1 DNA MER2_type 0 2418 1649 2339 96 0 0 chr3 25729084 25729387 -192307771 - AluSx SINE Alu -9 303 1 10619 119 83 142 chr3 25729387 25731180 -192305978 - Tigger1 DNA MER2_type -769 1649 48 1365 273 61 64 chr3 25731236 25731973 -192305185 + L2 LINE L2 2452 3209 -104 366 278 130 0 chr3 25733866 25733981 -192303177 + L2 LINE L2 3184 3313 0 322 208 0 28 chr3 25734082 25734154 -192303004 + L2 LINE L2 3244 3313 0 1349 208 30 33 chr3 25734576 25734908 -192302250 - L1ME2 LINE L1 -6 6158 5828 1095 184 72 34 chr3 25734911 25735118 -192302040 - MER8 DNA MER2_type -3 236 22 2264 200 87 22 chr3 25735130 25735837 -192301321 - L1ME2 LINE L1 -335 5829 5075 242 226 426 9 chr3 25735866 25735981 -192301177 - MER77 LTR ERV1 -6 599 437 441 273 210 43 chr3 25735995 25736295 -192300863 - L2 LINE L2 -911 2403 2054 2022 106 0 7 chr3 25736303 25736595 -192300563 - AluSc SINE Alu -19 290 1 2389 73 7 0 chr3 25736852 25737155 -192300003 + AluY SINE Alu 1 305 -6 194 107 71 0 chr3 25737480 25737536 -192299622 + (TA)n Simple_repeat Simple_repeat 1 60 0 759 253 185 49 chr3 25737717 25738325 -192298833 - L2 LINE L2 -4 3309 2616 257 222 130 37 chr3 25738405 25738513 -192298645 + L2 LINE L2 3190 3307 -6 26 0 0 0 chr3 25739248 25739274 -192297884 + AT_rich Low_complexity Low_complexity 1 26 0 1602 142 31 43 chr3 25741802 25742126 -192295032 - MER33 DNA MER1_type 0 324 5 240 254 57 49 chr3 25742399 25742521 -192294637 + L1ME4a LINE L1 5923 6045 -76 589 186 0 0 chr3 25742587 25742689 -192294469 - AluJb SINE Alu -30 282 181 1308 183 4 4 chr3 25742689 25742918 -192294240 - AluJb SINE Alu -83 229 1 25 51 0 0 chr3 25742941 25742980 -192294178 + AT_rich Low_complexity Low_complexity 1 39 0 2109 163 18 3 chr3 25743167 25743510 -192293648 - MER7A DNA MER2_type 0 346 1 2519 70 0 0 chr3 25743572 25743872 -192293286 - AluY SINE Alu -11 300 1 1439 156 105 8 chr3 25744036 25744293 -192292865 + AluJo SINE Alu 1 282 -30 1040 172 0 17 chr3 25744307 25744487 -192292671 + AluSg/x SINE Alu 134 310 0 188 358 50 44 chr3 25745700 25745916 -192291242 + MIR3 SINE MIR 4 250 -12 1805 220 47 4 chr3 25749430 25749894 -192287264 - Charlie4a DNA MER1_type -5 503 20 5150 139 41 5 chr3 25750569 25750725 -192286433 - L1PA16 LINE L1 0 6166 6017 222 37 0 0 chr3 25750725 25750752 -192286406 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 5150 139 41 5 chr3 25750752 25751473 -192285685 - L1PA16 LINE L1 -149 6017 5257 6282 196 23 5 chr3 25751627 25752986 -192284172 - L1 LINE L1 -904 5242 3860 571 174 41 0 chr3 25752986 25753107 -192284051 + L1PA15-16 LINE L1 2350 2475 -4374 353 263 167 45 chr3 25753612 25753810 -192283348 - MIR SINE MIR -13 249 28 194 352 96 32 chr3 25754247 25754622 -192282536 + L2 LINE L2 1944 2342 -972 2080 90 0 8 chr3 25754678 25754945 -192282213 + AluSq SINE Alu 39 303 -10 243 255 0 0 chr3 25755129 25755180 -192281978 + GA-rich Low_complexity Low_complexity 2 52 0 1527 193 18 11 chr3 25756374 25756654 -192280504 + AluJo SINE Alu 1 282 -30 183 42 0 0 chr3 25756658 25756682 -192280476 + (CCAA)n Simple_repeat Simple_repeat 2 25 0 1751 173 66 18 chr3 25757154 25757489 -192279669 - MLT1A1 LTR MaLR 0 365 15 935 277 90 19 chr3 25757817 25758229 -192278929 + MLT1J1 LTR MaLR 4 444 -2 316 290 103 26 chr3 25758894 25759049 -192278109 + MIR3 SINE MIR 21 187 -21 422 219 181 48 chr3 25759432 25759724 -192277434 - Charlie7 DNA MER1_type 0 2612 2282 1836 230 130 15 chr3 25759751 25760399 -192276759 - Charlie7 DNA MER1_type -401 2211 1490 772 261 80 31 chr3 25760409 25760734 -192276424 - Charlie7 DNA MER1_type -2259 353 13 411 255 174 19 chr3 25760816 25760977 -192276181 + MER5A DNA MER1_type 4 189 0 241 279 269 18 chr3 25761177 25761396 -192275762 - L2 LINE L2 -61 3252 2979 1790 192 137 105 chr3 25761402 25762166 -192274992 + LTR1B LTR ERV1 1 982 -38 234 236 0 36 chr3 25762317 25762372 -192274786 + L2 LINE L2 3219 3271 -1 259 250 226 0 chr3 25764313 25764397 -192272761 - MIR3 SINE MIR -14 194 92 702 296 94 57 chr3 25764921 25765202 -192271956 + L2 LINE L2 2827 3096 -217 441 0 0 0 chr3 25765202 25765251 -192271907 + (CA)n Simple_repeat Simple_repeat 2 50 0 702 296 94 57 chr3 25765251 25765263 -192271895 + L2 LINE L2 3096 3106 -207 2053 121 4 0 chr3 25765263 25765543 -192271615 - AluSx SINE Alu -31 281 1 702 296 94 57 chr3 25765543 25765718 -192271440 + L2 LINE L2 3106 3313 0 2736 7 0 0 chr3 25766372 25766668 -192270490 - AluY SINE Alu -15 296 1 416 299 55 30 chr3 25767895 25768059 -192269099 + MIR3 SINE MIR 26 193 -15 254 192 77 67 chr3 25768629 25768733 -192268425 + MIR SINE MIR 73 177 -85 3779 197 83 70 chr3 25769425 25770507 -192266651 + LTR28 LTR ERV1 1 1735 -20 1706 84 0 0 chr3 25770543 25770756 -192266402 + AluSc SINE Alu 81 293 -16 344 368 48 6 chr3 25770794 25770960 -192266198 - MIR3 SINE MIR -34 174 2 315 309 81 16 chr3 25774755 25774878 -192262280 - L2 LINE L2 -1 3271 3141 679 297 41 5 chr3 25774929 25775148 -192262010 - MIR SINE MIR -15 247 21 297 0 0 0 chr3 25775308 25775341 -192261817 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 1314 164 5 18 chr3 25775348 25775568 -192261590 - AluJo SINE Alu -24 288 72 248 247 0 155 chr3 25775766 25775863 -192261295 - L2 LINE L2 -2 3270 3189 325 340 38 19 chr3 25776315 25776474 -192260684 + MIR SINE MIR 20 181 -81 260 359 81 21 chr3 25776919 25777153 -192260005 - MIR SINE MIR -12 250 3 183 147 29 0 chr3 25777484 25777518 -192259640 - L2 LINE L2 -12 3301 3267 2143 109 14 0 chr3 25778409 25778702 -192258456 + AluY SINE Alu 1 297 -14 1566 164 3 40 chr3 25778702 25779006 -192258152 - AluJb SINE Alu -19 293 1 208 339 118 24 chr3 25779387 25779514 -192257644 - L2 LINE L2 0 3313 3175 1381 186 71 4 chr3 25779728 25780008 -192257150 + L1MC1 LINE L1 5732 6030 -303 2882 176 9 33 chr3 25780008 25780547 -192256611 - MER44D DNA MER2_type -24 581 1 1209 163 76 47 chr3 25780549 25780690 -192256468 + L1MC1 LINE L1 6048 6183 -161 2584 55 0 3 chr3 25780690 25780997 -192256161 + AluY SINE Alu 1 306 -5 1209 163 76 47 chr3 25780997 25781144 -192256014 + L1MC1 LINE L1 6183 6344 0 2263 99 7 0 chr3 25781901 25782205 -192254953 + AluSq SINE Alu 1 306 -7 779 196 33 13 chr3 25783096 25783249 -192253909 - MLT1C LTR MaLR -25 442 287 * 1401 152 81 108 chr3 25783245 25783614 -192253544 - MLT1C LTR MaLR -106 361 3 190 298 0 0 chr3 25783614 25783661 -192253497 + MIR3 SINE MIR 115 161 -47 213 170 64 0 chr3 25783933 25783980 -192253178 + L2 LINE L2 3262 3311 -2 228 370 48 27 chr3 25784525 25784671 -192252487 + L2 LINE L2 596 744 -2570 207 0 0 0 chr3 25784945 25784968 -192252190 + (T)n Simple_repeat Simple_repeat 1 23 0 324 284 9 37 chr3 25785324 25785433 -192251725 - L2 LINE L2 -5 3308 3203 1768 174 7 7 chr3 25785521 25785814 -192251344 - AluJb SINE Alu -19 293 1 266 288 23 45 chr3 25786152 25786284 -192250874 + L2 LINE L2 1823 1951 -1363 462 268 24 16 chr3 25786463 25786590 -192250568 + MER94 DNA DNA 7 134 0 200 304 146 79 chr3 25787218 25787458 -192249700 + L2 LINE L2 2933 3188 -84 27 0 0 0 chr3 25787874 25787901 -192249257 + AT_rich Low_complexity Low_complexity 1 27 0 24 67 0 0 chr3 25789335 25789380 -192247778 + AT_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr3 25789701 25789729 -192247429 + AT_rich Low_complexity Low_complexity 1 28 0 28 99 0 0 chr3 25790563 25790654 -192246504 + AT_rich Low_complexity Low_complexity 1 91 0 370 250 189 0 chr3 25795657 25795809 -192241349 + MER5A DNA MER1_type 4 189 0 533 158 4 214 chr3 25795953 25796187 -192240971 - MER5A DNA MER1_type -1 188 4 25 0 0 0 chr3 25796358 25796383 -192240775 + AT_rich Low_complexity Low_complexity 1 25 0 1541 208 29 44 chr3 25796791 25797176 -192239982 - MER89 LTR ERV1 -1 558 180 357 175 0 0 chr3 25797184 25797247 -192239911 - MER89 LTR ERV1 -496 63 1 270 254 0 0 chr3 25797984 25798039 -192239119 - L2 LINE L2 -5 3267 3213 5149 35 0 0 chr3 25798868 25799477 -192237681 + L1PA3 LINE L1 5544 6152 -3 2105 76 0 0 chr3 25800716 25800979 -192236179 + AluY SINE Alu 40 302 -9 313 269 106 34 chr3 25801026 25801234 -192235924 - L1MC4a LINE L1 -1949 6253 6031 1098 180 11 16 chr3 25801341 25801530 -192235628 + MER5A DNA MER1_type 1 188 -1 353 332 73 28 chr3 25801734 25802020 -192235138 - L1MC4a LINE L1 -1112 5428 5130 25 31 0 0 chr3 25802112 25802144 -192235014 + AT_rich Low_complexity Low_complexity 1 32 0 1516 160 93 15 chr3 25802164 25802433 -192234725 - AluJo SINE Alu -20 292 3 656 320 102 46 chr3 25802518 25803448 -192233710 - L1MC4a LINE L1 -2961 3579 2598 532 318 72 70 chr3 25803460 25804265 -192232893 + L1ME1 LINE L1 36 842 -5554 493 268 91 10 chr3 25804286 25804484 -192232674 + L1ME1 LINE L1 3631 3844 -2371 * 3054 233 78 40 chr3 25804480 25805449 -192231709 + L1ME1 LINE L1 4231 5162 -1073 2057 135 3 7 chr3 25805449 25805753 -192231405 + AluSx SINE Alu 1 303 -9 3054 233 78 40 chr3 25805753 25806412 -192230746 + L1ME1 LINE L1 5162 5944 -291 2258 104 0 3 chr3 25806412 25806710 -192230448 - AluSg SINE Alu -13 297 1 3054 233 78 40 chr3 25806710 25806943 -192230215 + L1ME1 LINE L1 5944 6167 -68 255 324 9 9 chr3 25807428 25807536 -192229622 - L1MC4a LINE L1 -6412 128 21 1617 200 10 13 chr3 25807552 25807862 -192229296 - AluJb SINE Alu -3 309 1 1297 212 85 184 chr3 25807865 25808996 -192228162 + L2 LINE L2 2310 3310 -3 1738 169 3 26 chr3 25809076 25809378 -192227780 + AluJb SINE Alu 2 296 -16 284 273 160 20 chr3 25809541 25809691 -192227467 - MIR3 SINE MIR -36 172 2 191 290 14 43 chr3 25810727 25810796 -192226362 - MIR SINE MIR -125 83 17 216 356 100 40 chr3 25811207 25811758 -192225400 + L2 LINE L2 945 1528 -1786 318 329 177 44 chr3 25811760 25812352 -192224806 + L2 LINE L2 2212 2882 -432 3162 273 129 27 chr3 25812636 25814164 -192222994 - L2 LINE L2 -5 3308 1640 1029 255 273 19 chr3 25814584 25815310 -192221848 - L2 LINE L2 -1661 1653 744 467 273 31 16 chr3 25815529 25815657 -192221501 - MIR SINE MIR -89 173 44 239 321 107 36 chr3 25817096 25817292 -192219866 - MIR SINE MIR -4 258 49 799 202 35 81 chr3 25818169 25818367 -192218791 - MER5A DNA MER1_type 0 189 1 192 77 0 0 chr3 25821053 25821079 -192216079 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 351 245 172 56 chr3 25822217 25822290 -192214868 - MIR SINE MIR 0 262 199 2454 58 0 0 chr3 25822290 25822584 -192214574 - AluY SINE Alu -17 294 1 351 245 172 56 chr3 25822584 25822743 -192214415 - MIR SINE MIR -63 199 3 251 288 183 26 chr3 25823054 25823207 -192213951 + L2 LINE L2 2560 2736 -578 25 51 0 0 chr3 25823835 25823874 -192213284 + AT_rich Low_complexity Low_complexity 1 39 0 264 303 8 23 chr3 25823887 25824019 -192213139 - L1ME LINE L1 -254 5867 5738 4472 23 6 0 chr3 25824036 25824568 -192212590 - L1P LINE L1 -1975 4171 3637 3147 173 14 2 chr3 25824671 25825491 -192211667 - L1M1 LINE L1 -745 5401 4711 1634 193 10 7 chr3 25825498 25825804 -192211354 - AluJb SINE Alu -5 307 1 333 233 10 0 chr3 25825833 25825930 -192211228 - L1MC4 LINE L1 -1339 7498 2521 327 261 0 23 chr3 25825990 25826078 -192211080 - L1MC4 LINE L1 -1339 6703 6618 21 0 0 0 chr3 25826179 25826200 -192210958 + AT_rich Low_complexity Low_complexity 1 21 0 7685 174 41 32 chr3 25826201 25827564 -192209594 + L1MB8 LINE L1 2921 4306 -1840 2405 75 0 3 chr3 25827564 25827859 -192209299 - AluY SINE Alu -13 298 5 7685 174 41 32 chr3 25827859 25828266 -192208892 + L1MB8 LINE L1 4306 4708 -1438 207 100 0 0 chr3 25828298 25828328 -192208830 + (TA)n Simple_repeat Simple_repeat 1 30 0 778 215 58 35 chr3 25829067 25829362 -192207796 + L1MB8 LINE L1 5759 6022 -156 1416 253 67 26 chr3 25829422 25830299 -192206859 - L1MC4 LINE L1 -4889 1534 1061 338 311 10 0 chr3 25830403 25830506 -192206652 - L1MC4 LINE L1 -5502 921 818 246 343 29 15 chr3 25830748 25830885 -192206273 - L1MC4 LINE L1 -6020 403 265 237 237 26 26 chr3 25831032 25831108 -192206050 - L1MCa LINE L1 -6331 95 20 1804 154 101 0 chr3 25831502 25831808 -192205350 - MER1B DNA MER1_type 0 337 1 645 218 8 8 chr3 25831925 25832058 -192205100 + FLAM_A SINE Alu 1 133 0 28 71 0 0 chr3 25832722 25832778 -192204380 + AT_rich Low_complexity Low_complexity 1 56 0 751 265 25 5 chr3 25833307 25833511 -192203647 + MER3 DNA MER1_type 2 209 0 5709 25 1 1 chr3 25834280 25834949 -192202209 - L1PA3 LINE L1 0 6155 5487 1857 156 28 0 chr3 25835416 25835704 -192201454 + AluSx SINE Alu 2 297 -15 336 96 39 0 chr3 25835891 25835943 -192201215 + MER65B LTR ERV1 1 54 -477 272 222 32 16 chr3 25835947 25836010 -192201148 - MER2 DNA MER2_type 0 345 282 * 495 270 107 19 chr3 25835989 25836148 -192201010 - MER8 DNA MER2_type -64 175 3 234 232 89 95 chr3 25836222 25836390 -192200768 + MER65B LTR ERV1 80 246 -285 1547 164 28 71 chr3 25836755 25837079 -192200079 - AluJb SINE Alu -2 310 1 220 341 57 0 chr3 25837142 25837230 -192199928 + L2 LINE L2 3133 3225 -47 425 299 129 7 chr3 25838744 25838921 -192198237 - MIR SINE MIR -48 214 22 1670 152 9 60 chr3 25839258 25839573 -192197585 - AluSx SINE Alu -10 302 4 5361 38 3 0 chr3 25841570 25842251 -192194907 - L1P LINE L1 -2465 3681 2999 10082 25 1 0 chr3 25842251 25844215 -192192943 + L1PA3 LINE L1 4194 6155 0 300 290 75 18 chr3 25844422 25844662 -192192496 - L1MC/D LINE L1 -755 5391 5213 189 359 43 11 chr3 25845270 25845362 -192191796 + MIR SINE MIR 29 123 -139 23 0 0 0 chr3 25845617 25845640 -192191518 + AT_rich Low_complexity Low_complexity 1 23 0 1512 175 38 15 chr3 25845872 25846135 -192191023 + AluJo SINE Alu 14 282 -30 388 295 160 6 chr3 25846462 25846618 -192190540 - MER5A DNA MER1_type -1 188 9 853 196 38 11 chr3 25847336 25847520 -192189638 - MER5A DNA MER1_type 0 189 1 190 137 0 39 chr3 25848358 25848409 -192188749 + (GAAAA)n Simple_repeat Simple_repeat 2 50 0 4224 54 6 0 chr3 25849335 25849870 -192187288 + L1PA7 LINE L1 5615 6152 -2 186 167 0 0 chr3 25849926 25849962 -192187196 + A-rich Low_complexity Low_complexity 2 37 0 23 68 0 0 chr3 25850553 25850597 -192186561 + AT_rich Low_complexity Low_complexity 1 44 0 183 42 0 0 chr3 25850816 25850840 -192186318 + (A)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr3 25851998 25852020 -192185138 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 25853778 25853799 -192183359 + AT_rich Low_complexity Low_complexity 1 21 0 462 315 25 47 chr3 25853887 25854166 -192182992 - MARNA DNA Mariner -238 348 76 366 349 60 36 chr3 25854285 25854534 -192182624 - L3 LINE CR1 -13 1564 1310 185 321 19 0 chr3 25854594 25854647 -192182511 + L2 LINE L2 3258 3311 -2 22 0 0 0 chr3 25854687 25854709 -192182449 + AT_rich Low_complexity Low_complexity 1 22 0 260 333 81 0 chr3 25855801 25855900 -192181258 - MIR SINE MIR -5 257 151 2171 109 6 3 chr3 25856310 25856622 -192180536 - AluSp SINE Alu 0 313 1 21 0 0 0 chr3 25856889 25856910 -192180248 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr3 25857078 25857113 -192180045 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 25859465 25859488 -192177670 + AT_rich Low_complexity Low_complexity 1 23 0 1698 249 75 12 chr3 25859494 25860133 -192177025 + L1M4 LINE L1 2569 3247 -2899 1528 201 81 26 chr3 25860139 25860610 -192176548 + L1M4 LINE L1 4850 5346 -812 1871 146 21 0 chr3 25860620 25860908 -192176250 - AluSx SINE Alu -18 294 1 931 146 176 10 chr3 25860917 25861122 -192176036 - L1MD1 LINE L1 -2 6240 6002 381 209 135 0 chr3 25861123 25861286 -192175872 - L1M4 LINE L1 -2889 3257 3073 242 245 147 35 chr3 25861306 25861449 -192175709 - L1ME LINE L1 -346 5775 5617 25 0 0 0 chr3 25861589 25861614 -192175544 + AT_rich Low_complexity Low_complexity 1 25 0 321 183 17 0 chr3 25861627 25861687 -192175471 - AluJo SINE Alu -122 180 120 657 159 0 43 chr3 25861701 25861839 -192175319 - FLAM_C SINE Alu -1 142 11 32 91 0 0 chr3 25861983 25862071 -192175087 + AT_rich Low_complexity Low_complexity 1 88 0 279 186 0 0 chr3 25862119 25862178 -192174980 - MER57A LTR ERV1 -28 375 317 430 311 0 25 chr3 25862461 25862580 -192174578 - L2 LINE L2 -2 3311 3196 248 284 11 0 chr3 25862743 25862831 -192174327 - L1M4 LINE L1 -3905 2241 2153 314 247 86 0 chr3 25862989 25863070 -192174088 - MIR SINE MIR 0 262 175 349 325 77 6 chr3 25863292 25863461 -192173697 - HAL1b LINE L1 -607 741 561 490 229 84 89 chr3 25864009 25864151 -192173007 + MIR SINE MIR 50 193 -69 1750 166 0 7 chr3 25864151 25864483 -192172675 + AluJb SINE Alu 1 330 0 490 229 84 89 chr3 25864483 25864553 -192172605 + MIR SINE MIR 193 262 0 2013 144 0 0 chr3 25865720 25866019 -192171139 + AluSx SINE Alu 1 299 -13 264 202 0 53 chr3 25866781 25866875 -192170283 + T-rich Low_complexity Low_complexity 5 93 0 284 218 26 0 chr3 25867320 25867398 -192169760 - MER5C DNA MER1_type -168 156 77 470 265 61 30 chr3 25867607 25867739 -192169419 - MIR SINE MIR -10 252 117 701 126 8 17 chr3 25867779 25867898 -192169260 - FLAM_A SINE Alu -15 118 1 23 33 0 0 chr3 25868132 25868162 -192168996 + AT_rich Low_complexity Low_complexity 1 30 0 267 79 0 0 chr3 25869318 25869356 -192167802 + (CA)n Simple_repeat Simple_repeat 2 39 0 629 191 72 0 chr3 25869559 25869711 -192167447 + MER45A DNA AcHobo 3 177 -1 282 224 56 88 chr3 25869765 25869890 -192167268 + MIR SINE MIR 113 233 -29 1562 181 44 3 chr3 25870018 25870311 -192166847 + AluSg SINE Alu 1 305 -5 24 32 0 0 chr3 25870521 25870552 -192166606 + AT_rich Low_complexity Low_complexity 1 31 0 1570 218 30 3 chr3 25871148 25871479 -192165679 - MER58B DNA MER1_type -1 340 1 2645 174 56 13 chr3 25871678 25872275 -192164883 + L1MB7 LINE L1 5548 6181 -2 2031 103 48 10 chr3 25873535 25873826 -192163332 + AluSc SINE Alu 1 302 -7 22 35 0 0 chr3 25876301 25876330 -192160828 + AT_rich Low_complexity Low_complexity 1 29 0 296 280 99 54 chr3 25876426 25876665 -192160493 - L1ME LINE L1 -404 5717 5473 212 290 9 56 chr3 25877775 25877882 -192159276 - L2 LINE L2 -60 3253 3152 1542 154 25 87 chr3 25877882 25878238 -192158920 - MER44D DNA MER2_type 0 609 6 180 0 0 0 chr3 25878238 25878258 -192158900 + (TACTG)n Simple_repeat Simple_repeat 1 20 0 438 20 0 0 chr3 25878289 25878340 -192158818 + (TG)n Simple_repeat Simple_repeat 2 52 0 213 262 16 0 chr3 25878348 25878409 -192158749 + L2 LINE L2 3208 3269 -3 411 333 56 14 chr3 25879695 25879911 -192157247 + MLT1L LTR MaLR 389 613 -2 25 51 0 0 chr3 25880047 25880086 -192157072 + AT_rich Low_complexity Low_complexity 1 39 0 677 298 12 0 chr3 25880433 25880604 -192156554 - MIR SINE MIR -89 173 1 400 305 62 59 chr3 25880637 25880813 -192156345 - L1ME LINE L1 -1495 4651 4472 1842 164 3 7 chr3 25880813 25881111 -192156047 - AluJo SINE Alu -15 297 1 400 305 62 59 chr3 25881111 25881255 -192155903 - L1ME LINE L1 -1674 4472 4330 27 81 0 0 chr3 25881583 25881645 -192155513 + AT_rich Low_complexity Low_complexity 1 62 0 313 341 171 24 chr3 25883251 25883462 -192153696 + MIR SINE MIR 2 243 -19 2563 124 18 0 chr3 25884683 25885079 -192152079 + MER57A LTR ERV1 1 403 0 222 323 39 31 chr3 25885453 25885580 -192151578 - MIR3 SINE MIR -16 192 65 22 0 0 0 chr3 25886573 25886595 -192150563 + AT_rich Low_complexity Low_complexity 1 22 0 1637 202 78 53 chr3 25886600 25886815 -192150343 - L1MC5 LINE L1 -44 7917 7709 1561 186 0 46 chr3 25886815 25887142 -192150016 + AluJo SINE Alu 1 312 0 1637 202 78 53 chr3 25887142 25887526 -192149632 - L1MC5 LINE L1 -252 7709 7303 771 237 237 49 chr3 25887564 25888012 -192149146 + MLT1G3 LTR MaLR 9 540 -27 824 188 31 71 chr3 25888025 25888249 -192148909 - L1MC5 LINE L1 -682 7279 7065 670 192 0 15 chr3 25889138 25889268 -192147890 + MLT1J1 LTR MaLR 20 147 -299 955 219 196 29 chr3 25889434 25889776 -192147382 + MLT1F LTR MaLR 136 534 -8 686 271 33 37 chr3 25889956 25890229 -192146929 + MLT1F-int LTR MaLR 292 563 -808 30 0 0 0 chr3 25890451 25890481 -192146677 + AT_rich Low_complexity Low_complexity 1 30 0 6620 54 18 8 chr3 25890628 25891500 -192145658 - L1PA7 LINE L1 -13 6141 5261 5687 92 0 0 chr3 25891490 25892286 -192144872 + L1P LINE L1 4408 5203 -943 * 625 171 45 0 chr3 25892294 25892405 -192144753 + MER20 DNA MER1_type 104 219 0 184 300 20 0 chr3 25892515 25892565 -192144593 + L2 LINE L2 3254 3304 -9 274 367 25 8 chr3 25892620 25892740 -192144418 + MIR3 SINE MIR 41 162 -46 237 313 62 0 chr3 25892915 25892995 -192144163 + L2 LINE L2 3229 3313 0 25 31 0 0 chr3 25893654 25893686 -192143472 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr3 25894827 25894857 -192142301 + AT_rich Low_complexity Low_complexity 1 30 0 263 150 0 0 chr3 25895130 25895170 -192141988 - U6 snRNA snRNA -66 41 2 520 222 167 11 chr3 25895189 25895369 -192141789 + MER3 DNA MER1_type 1 208 -1 24 53 0 0 chr3 25895373 25895411 -192141747 + AT_rich Low_complexity Low_complexity 1 38 0 1719 166 7 24 chr3 25895631 25895926 -192141232 - AluJb SINE Alu -22 290 1 197 261 98 54 chr3 25896469 25896561 -192140597 + MIR SINE MIR 120 215 -47 185 177 32 48 chr3 25896849 25896911 -192140247 - L2 LINE L2 -62 3251 3191 22 35 0 0 chr3 25897139 25897168 -192139990 + AT_rich Low_complexity Low_complexity 1 29 0 689 301 40 78 chr3 25897739 25898248 -192138910 + L2 LINE L2 2786 3296 -17 2125 154 39 31 chr3 25898591 25899135 -192138023 + MLT2A2 LTR ERVL 1 554 0 259 159 0 32 chr3 25899273 25899336 -192137822 + (TATATG)n Simple_repeat Simple_repeat 3 63 0 317 253 12 12 chr3 25899342 25899425 -192137733 + L1MC4 LINE L1 6614 6696 -1346 367 228 86 10 chr3 25900486 25900609 -192136549 - MIR SINE MIR -41 167 73 1124 182 15 5 chr3 25901604 25901807 -192135351 - MER2 DNA MER2_type -135 210 6 22 56 0 0 chr3 25903524 25903560 -192133598 + AT_rich Low_complexity Low_complexity 1 36 0 741 169 42 131 chr3 25906030 25906266 -192130892 + MIR SINE MIR 2 216 -46 432 0 0 0 chr3 25906275 25906323 -192130835 + (CA)n Simple_repeat Simple_repeat 2 49 0 1208 183 24 62 chr3 25906334 25906623 -192130535 - AluJo SINE Alu -30 282 5 23 33 0 0 chr3 25906634 25906664 -192130494 + AT_rich Low_complexity Low_complexity 1 30 0 13942 137 37 7 chr3 25907074 25909417 -192127741 + Tigger1 DNA MER2_type 2 2414 -4 248 158 0 0 chr3 25910025 25910063 -192127095 - L2 LINE L2 -13 3300 3263 274 269 0 15 chr3 25910723 25910790 -192126368 - MIR SINE MIR -103 159 94 378 321 0 15 chr3 25911206 25911343 -192125815 + MER117 DNA MER1_type 12 146 -51 23 33 0 0 chr3 25911519 25911549 -192125609 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 25913078 25913099 -192124059 + AT_rich Low_complexity Low_complexity 1 21 0 241 239 231 30 chr3 25913409 25913543 -192123615 - MIR SINE MIR -51 211 51 1921 146 0 7 chr3 25913580 25913881 -192123277 + AluJb SINE Alu 3 301 -11 183 290 43 65 chr3 25914126 25914219 -192122939 - MIR SINE MIR -56 206 116 237 178 0 0 chr3 25916627 25916672 -192120486 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 28 0 0 0 chr3 25918331 25918359 -192118799 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 25919292 25919320 -192117838 + AT_rich Low_complexity Low_complexity 1 28 0 355 287 111 49 chr3 25921067 25921311 -192115847 + L1M4 LINE L1 3 261 -6281 2293 135 19 6 chr3 25921514 25921878 -192115280 - THE1C LTR MaLR -6 369 1 8926 111 37 94 chr3 25921884 25923548 -192113610 - THE1C-int LTR MaLR -12 1568 1 2551 109 5 11 chr3 25923548 25923925 -192113233 - THE1C LTR MaLR 0 375 1 249 158 0 61 chr3 25924030 25924112 -192113046 - THE1C LTR MaLR -297 78 2 397 272 25 38 chr3 25924154 25924330 -192112828 + L1M4 LINE L1 533 926 -5720 569 253 65 7 chr3 25924626 25924780 -192112378 + MIR SINE MIR 100 262 0 1677 196 86 24 chr3 25925357 25925730 -192111428 + MSTD LTR MaLR 1 396 0 198 0 0 0 chr3 25925983 25926005 -192111153 + (TG)n Simple_repeat Simple_repeat 1 22 0 347 160 13 0 chr3 25926009 25926084 -192111074 + GA-rich Low_complexity Low_complexity 1 76 0 184 265 118 0 chr3 25926155 25926223 -192110935 - MER5B DNA MER1_type -78 100 25 2357 113 19 11 chr3 25926745 25927117 -192110041 + THE1C LTR MaLR 1 375 0 26 64 0 0 chr3 25927347 25927394 -192109764 + AT_rich Low_complexity Low_complexity 1 47 0 1640 169 33 0 chr3 25928764 25929037 -192108121 + AluJb SINE Alu 1 282 -30 1908 154 0 0 chr3 25929054 25929358 -192107800 - AluSx SINE Alu 0 308 5 382 272 204 59 chr3 25929596 25930096 -192107062 - L2 LINE L2 0 3313 2738 313 253 40 73 chr3 25930323 25930473 -192106685 + L1ME LINE L1 3 147 -5923 243 287 39 23 chr3 25930945 25931074 -192106084 + L1ME LINE L1 329 459 -5611 267 287 32 11 chr3 25931151 25931245 -192105913 + L1ME LINE L1 447 542 -5541 215 209 31 31 chr3 25931272 25931401 -192105757 + GA-rich Low_complexity Low_complexity 4 132 0 512 240 42 31 chr3 25931409 25931601 -192105557 + L1ME LINE L1 542 735 -5345 1545 202 42 42 chr3 25931621 25932047 -192105111 + LTR56 LTR ERV1 20 445 0 700 220 39 35 chr3 25932094 25932353 -192104805 + L1ME LINE L1 787 1046 -5037 200 217 0 0 chr3 25932647 25932693 -192104465 + A-rich Low_complexity Low_complexity 1 46 0 536 264 52 20 chr3 25932754 25933004 -192104154 - L1ME4a LINE L1 -187 5934 5677 309 218 13 39 chr3 25933665 25933743 -192103415 + MER58 DNA MER1_type 27 102 -113 563 195 235 23 chr3 25933788 25933945 -192103213 - MER5C DNA MER1_type -54 270 148 1814 170 12 23 chr3 25933945 25934287 -192102871 + MER44D DNA MER2_type 1 608 -1 563 195 235 23 chr3 25934287 25934350 -192102808 - MER5C DNA MER1_type -176 148 3 655 346 213 28 chr3 25934712 25935111 -192102047 - L2 LINE L2 -710 2604 2280 2175 72 10 3 chr3 25935111 25935402 -192101756 + AluY SINE Alu 1 293 -18 655 346 213 28 chr3 25935402 25936082 -192101076 - L2 LINE L2 -1034 2280 1325 366 256 0 22 chr3 25936433 25936523 -192100635 + FRAM/FAM SINE Alu 1 86 -80 * 4909 141 9 20 chr3 25936522 25937361 -192099797 - Tigger1 DNA MER2_type -570 1848 1019 12194 117 16 25 chr3 25937373 25939760 -192097398 + L1P3 LINE L1 6 2413 -4048 2209 81 6 31 chr3 25939729 25940051 -192097107 + L1PA7 LINE L1 5623 5936 -533 * 1139 62 0 0 chr3 25940051 25940193 -192096965 + L1PA7 LINE L1 6312 6457 -12 965 105 37 19 chr3 25940193 25940355 -192096803 + AluSq SINE Alu 134 298 -15 659 96 0 0 chr3 25940356 25940450 -192096708 + L1M1 LINE L1 2626 2719 -4846 * 2259 134 37 68 chr3 25940447 25941056 -192096102 + L1M1 LINE L1 3266 3876 -3689 383 248 77 0 chr3 26141058 26141175 -191895983 - L3 LINE CR1 -149 1428 1303 733 163 121 25 chr3 26142267 26142507 -191894651 + MER33 DNA MER1_type 28 290 -34 465 206 84 19 chr3 26143570 26143677 -191893481 + MER33 DNA MER1_type 1 114 -210 1074 232 18 0 chr3 26144085 26144305 -191892853 + MER58A DNA MER1_type 1 224 0 878 216 0 21 chr3 26144678 26144868 -191892290 + MER5A DNA MER1_type 1 186 -3 242 125 0 0 chr3 26146787 26146827 -191890331 + 5S rRNA rRNA 1 40 -81 2452 84 0 0 chr3 26147183 26147492 -191889666 + AluY SINE Alu 1 309 -2 791 198 8 15 chr3 26148729 26148901 -191888257 - MER5B DNA MER1_type 0 189 8 353 304 21 62 chr3 26150327 26150521 -191886637 - MLT1H LTR MaLR -289 260 75 784 261 5 0 chr3 26150640 26150824 -191886334 + MIR SINE MIR 11 195 -67 215 309 15 0 chr3 26151174 26151242 -191885916 - L2 LINE L2 -4 3309 3241 290 228 206 0 chr3 26151427 26151519 -191885639 + MIR SINE MIR 108 218 -44 1298 147 53 9 chr3 26153059 26153284 -191883874 - MER46A DNA MER2_type -1 235 1 342 0 0 0 chr3 26153608 26153646 -191883512 + (CA)n Simple_repeat Simple_repeat 1 38 0 234 0 0 0 chr3 26153645 26153671 -191883487 + (TA)n Simple_repeat Simple_repeat 2 27 0 * 2154 116 0 23 chr3 26153671 26153974 -191883184 - AluSx SINE Alu -16 296 1 323 289 88 90 chr3 26154236 26154579 -191882579 - MLT1I LTR MaLR 0 409 68 2276 121 30 33 chr3 26154620 26154985 -191882173 + THE1B LTR MaLR 1 364 0 1073 322 190 12 chr3 26156177 26157210 -191879948 - L2 LINE L2 -187 3085 1860 496 264 46 27 chr3 26158764 26158966 -191878192 + MIR SINE MIR 2 202 -60 457 261 62 47 chr3 26159043 26159254 -191877904 - MIR SINE MIR -2 260 47 287 321 71 48 chr3 26159436 26159498 -191877660 + MIR SINE MIR 35 94 -168 2140 125 47 33 chr3 26159498 26159857 -191877301 - THE1B LTR MaLR 0 364 1 287 321 71 48 chr3 26159857 26159962 -191877196 + MIR SINE MIR 94 206 -56 7461 38 2 0 chr3 26160216 26161284 -191875874 + L1PA5 LINE L1 5084 6153 -1 234 267 74 0 chr3 26161458 26161534 -191875624 - MIR SINE MIR -87 121 41 23 33 0 0 chr3 26162468 26162498 -191874660 + AT_rich Low_complexity Low_complexity 1 30 0 453 302 6 11 chr3 26162697 26162876 -191874282 + (TA)n Simple_repeat Simple_repeat 2 179 0 1520 168 51 0 chr3 26165158 26165414 -191871744 - AluSx SINE Alu -9 303 35 585 228 54 6 chr3 26165787 26165954 -191871204 + LTR16C LTR ERVL 305 479 -12 859 146 146 0 chr3 26167087 26167307 -191869851 + MER33 DNA MER1_type 51 302 -22 291 196 41 0 chr3 26167543 26167640 -191869518 + CT-rich Low_complexity Low_complexity 3 103 0 219 69 0 0 chr3 26168356 26168385 -191868773 + (T)n Simple_repeat Simple_repeat 1 29 0 702 276 57 39 chr3 26168864 26169143 -191868015 + MLT1G LTR MaLR 1 284 -306 821 239 93 8 chr3 26170180 26170416 -191866742 - MIR SINE MIR -11 251 2 369 309 37 27 chr3 26173112 26173300 -191863858 + HsTC2a DNA Tc2 4 193 -551 347 297 115 10 chr3 26173758 26173967 -191863191 - LTR33A LTR ERVL 0 523 293 228 286 108 59 chr3 26174148 26174351 -191862807 - LTR50 LTR ERVL -582 213 1 1079 160 29 19 chr3 26174621 26174827 -191862331 - MER20 DNA MER1_type -1 218 11 2441 122 20 0 chr3 26175492 26175893 -191861265 + L1MA3 LINE L1 5897 6305 0 23 78 0 0 chr3 26176348 26176399 -191860759 + AT_rich Low_complexity Low_complexity 1 51 0 511 285 93 4 chr3 26176919 26177165 -191859993 + HAL1 LINE L1 1457 1724 -783 262 272 157 88 chr3 26177205 26177466 -191859692 + L2 LINE L2 3035 3313 0 2475 70 0 0 chr3 26177792 26178091 -191859067 + AluY SINE Alu 1 299 -12 554 149 37 8 chr3 26178207 26178341 -191858817 + MER96B DNA MER1_type? 44 181 -236 255 125 0 0 chr3 26178829 26178869 -191858289 + (T)n Simple_repeat Simple_repeat 1 40 0 400 292 4 14 chr3 26179107 26179221 -191857937 - MER5A DNA MER1_type -68 110 11 1602 214 32 22 chr3 26179486 26179856 -191857302 - MLT1A2 LTR MaLR 0 374 1 256 225 25 0 chr3 26180158 26180238 -191856920 - L1 LINE L1 -2204 3942 3861 390 327 0 0 chr3 26180264 26180368 -191856790 - L2 LINE L2 0 3313 3210 331 296 0 0 chr3 26180379 26180494 -191856664 - L1 LINE L1 -2320 3826 3712 367 249 73 68 chr3 26180573 26180982 -191856176 - L1M4 LINE L1 -1627 5221 4811 28 29 0 0 chr3 26181234 26181269 -191855889 + AT_rich Low_complexity Low_complexity 1 35 0 2187 113 3 7 chr3 26181415 26181725 -191855433 - AluSx SINE Alu -3 309 1 25 0 0 0 chr3 26183555 26183580 -191853578 + AT_rich Low_complexity Low_complexity 1 25 0 250 304 45 94 chr3 26183688 26183889 -191853269 + L2 LINE L2 2905 3095 -177 313 316 128 44 chr3 26184199 26184566 -191852592 - L1M4 LINE L1 -5739 1110 713 23 78 0 0 chr3 26184566 26184617 -191852541 + GC_rich Low_complexity Low_complexity 1 51 0 250 345 112 8 chr3 26185405 26185565 -191851593 + MIR3 SINE MIR 23 197 -11 1678 71 2 25 chr3 26185966 26186199 -191850959 - L1M3 LINE L1 -521 5659 5428 1245 95 6 0 chr3 26186199 26186366 -191850792 + L1PA7 LINE L1 5972 6141 -13 1678 71 2 25 chr3 26186366 26186410 -191850748 - L1M3 LINE L1 -752 5428 5385 4260 222 44 54 chr3 26187317 26187448 -191849710 + L1PA16 LINE L1 2182 2313 -5271 2639 123 3 0 chr3 26187448 26187822 -191849336 + THE1C LTR MaLR 1 375 0 4260 222 44 54 chr3 26187822 26189727 -191847431 + L1PA16 LINE L1 2313 4315 -3269 998 139 6 23 chr3 26189727 26189899 -191847259 - L1PB2 LINE L1 -4 6147 5979 674 205 12 81 chr3 26189927 26190185 -191846973 + L1P LINE L1 5081 5320 -826 3528 85 59 19 chr3 26190195 26190769 -191846389 - L1PB2 LINE L1 -172 5979 5383 * 3838 161 38 4 chr3 26190766 26191910 -191845248 + L1PA16 LINE L1 6207 7381 -223 1247 222 8 8 chr3 26192026 26192707 -191844451 + L1M4c LINE L1 2244 3079 -3303 1666 189 9 0 chr3 26192724 26193067 -191844091 + L1MA5 LINE L1 5955 6300 0 3285 169 43 19 chr3 26193073 26193370 -191843788 + L1MB3 LINE L1 5474 5762 -421 2005 187 120 31 chr3 26193370 26193846 -191843312 - MLT2B1 LTR ERVL -2 518 1 3285 169 43 19 chr3 26193846 26194239 -191842919 + L1MB3 LINE L1 5762 6181 -2 36 62 0 0 chr3 26194552 26194616 -191842542 + AT_rich Low_complexity Low_complexity 1 64 0 305 248 62 57 chr3 26194769 26194979 -191842179 + L1ME LINE L1 5615 5825 -296 22 56 0 0 chr3 26195179 26195215 -191841943 + AT_rich Low_complexity Low_complexity 1 36 0 36 23 0 0 chr3 26195296 26195339 -191841819 + AT_rich Low_complexity Low_complexity 1 43 0 24 53 0 0 chr3 26195452 26195490 -191841668 + AT_rich Low_complexity Low_complexity 1 38 0 734 289 14 47 chr3 26195600 26195877 -191841281 + MLT1L LTR MaLR 9 276 -339 705 339 96 10 chr3 26196088 26196474 -191840684 - LTR16A LTR ERVL -24 426 8 21 0 0 0 chr3 26198623 26198644 -191838514 + AT_rich Low_complexity Low_complexity 1 21 0 222 191 0 0 chr3 26198675 26198722 -191838436 + (TG)n Simple_repeat Simple_repeat 2 48 0 1989 137 7 0 chr3 26203270 26203555 -191833603 + AluSx SINE Alu 14 300 -12 622 67 11 0 chr3 26203714 26203803 -191833355 - THE1B LTR MaLR -2 362 273 2131 88 10 0 chr3 26203805 26204113 -191833045 - THE1-int LTR MaLR -1263 317 7 1876 153 120 34 chr3 26204118 26204535 -191832623 - MLT2A2 LTR ERVL 0 453 1 302 312 18 9 chr3 26204549 26204658 -191832500 + L1MEd LINE L1 919 1028 -5091 28 0 0 0 chr3 26204702 26204730 -191832428 + AT_rich Low_complexity Low_complexity 1 28 0 1890 152 10 75 chr3 26204784 26205198 -191831960 + L1MA7 LINE L1 5900 6286 -5 1388 223 59 20 chr3 26205599 26206003 -191831155 + LTR52 LTR ERVL 1 420 -1 538 268 58 11 chr3 26206713 26206903 -191830255 + MIR SINE MIR 17 215 -47 207 0 0 0 chr3 26207291 26207314 -191829844 + (TTG)n Simple_repeat Simple_repeat 2 24 0 407 281 47 22 chr3 26208089 26208367 -191828791 + L1MEd LINE L1 2961 3245 -2884 31 58 0 0 chr3 26208418 26208470 -191828688 + AT_rich Low_complexity Low_complexity 1 52 0 1044 192 126 19 chr3 26208973 26209234 -191827924 - AluJb SINE Alu -17 295 7 306 255 169 93 chr3 26209963 26210241 -191826917 + MLT1I LTR MaLR 85 383 -26 395 288 98 56 chr3 26210247 26210340 -191826818 + L1MEd LINE L1 3595 3683 -2446 2376 110 8 8 chr3 26210340 26210695 -191826463 + THE1A LTR MaLR 1 355 0 10910 102 35 0 chr3 26210695 26212221 -191824937 + THE1A-int LTR MaLR 1 1580 0 2311 132 6 8 chr3 26212221 26212577 -191824581 + THE1A LTR MaLR 1 355 0 395 288 98 56 chr3 26212577 26212696 -191824462 + L1MEd LINE L1 3682 3818 -2311 368 265 79 45 chr3 26212886 26213257 -191823901 + L1MEd LINE L1 1153 1630 -860 1297 214 72 38 chr3 26213261 26213705 -191823453 - L1ME2 LINE L1 -34 6130 5672 1408 180 92 0 chr3 26213920 26214225 -191822933 + MER46B DNA MER2_type 1 208 -28 761 130 294 0 chr3 26214501 26214647 -191822511 - MER5A DNA MER1_type 0 189 1 574 188 0 30 chr3 26214655 26214788 -191822370 - Charlie8 DNA MER1_type -2238 179 51 204 67 0 0 chr3 26214862 26214892 -191822266 + (CA)n Simple_repeat Simple_repeat 2 31 0 824 252 95 13 chr3 26217264 26217459 -191819699 + L1MC4a LINE L1 5574 5804 -2004 979 49 0 0 chr3 26217459 26217582 -191819576 + L1PA4 LINE L1 6031 6153 -2 824 252 95 13 chr3 26217582 26217692 -191819466 + L1MC4a LINE L1 5804 5904 -1904 53 49 0 0 chr3 26217692 26217773 -191819385 + AT_rich Low_complexity Low_complexity 1 81 0 388 333 29 18 chr3 26217780 26217951 -191819207 + MER5A DNA MER1_type 11 183 -6 2290 71 0 0 chr3 26218317 26218646 -191818512 - AluSg SINE Alu 0 329 1 236 229 107 49 chr3 26219271 26219393 -191817765 - LTR16C LTR ERVL -2 489 361 2420 86 0 0 chr3 26219898 26220201 -191816957 + AluY SINE Alu 2 304 -7 342 247 0 11 chr3 26220294 26220387 -191816771 - MLT1H LTR MaLR -2 547 456 472 250 81 60 chr3 26220476 26220760 -191816398 - MLT1H LTR MaLR -259 290 1 22 0 0 0 chr3 26221481 26221503 -191815655 + AT_rich Low_complexity Low_complexity 1 22 0 411 337 29 17 chr3 26221699 26221874 -191815284 + MER5A DNA MER1_type 7 183 -6 2405 90 0 3 chr3 26222232 26222543 -191814615 - AluSg SINE Alu 0 310 1 387 298 42 18 chr3 26223737 26223905 -191813253 - MLT1L LTR MaLR -351 264 93 233 274 142 18 chr3 26223979 26224092 -191813066 + MIR SINE MIR 136 262 0 1520 166 48 48 chr3 26224547 26224842 -191812316 + AluJb SINE Alu 1 295 -17 183 417 38 8 chr3 26225203 26225335 -191811823 + MIR3 SINE MIR 10 145 -63 372 308 17 8 chr3 26225382 26225499 -191811659 + MER5B DNA MER1_type 1 118 -60 512 212 42 48 chr3 26226859 26227024 -191810134 - MER103 DNA DNA -1 165 2 558 239 89 82 chr3 26228321 26228794 -191808364 - MLT1K LTR MaLR 0 476 1 202 237 0 17 chr3 26229035 26229094 -191808064 - L2 LINE L2 -226 3046 2989 389 214 195 88 chr3 26229134 26229442 -191807716 + MLT1J2 LTR MaLR 69 409 -41 1431 175 15 118 chr3 26229563 26229969 -191807189 - MLT1A1 LTR MaLR 0 365 2 910 289 135 35 chr3 26230757 26231284 -191805874 - L2 LINE L2 0 3313 2742 436 73 64 18 chr3 26231564 26231673 -191805485 + (TCTA)n Simple_repeat Simple_repeat 4 117 0 409 234 88 29 chr3 26231884 26232021 -191805137 - LTR16C LTR ERVL -3 488 344 1970 150 37 6 chr3 26232525 26232852 -191804306 + MER1B DNA MER1_type 1 337 0 1145 264 33 29 chr3 26232976 26233422 -191803736 + LTR16A LTR ERVL 1 454 -3 414 254 67 34 chr3 26234193 26234402 -191802756 + L1ME4a LINE L1 5689 5904 -217 441 281 156 5 chr3 26234654 26234853 -191802305 + L2 LINE L2 2011 2239 -1075 1154 260 39 10 chr3 26235285 26235593 -191801565 + L2 LINE L2 2218 2534 -780 320 277 129 0 chr3 26235598 26235699 -191801459 + L2 LINE L2 3137 3250 -22 1771 162 56 42 chr3 26235937 26236369 -191800789 - MLT1D LTR MaLR -35 470 33 411 242 30 0 chr3 26236381 26236480 -191800678 - L1MC4 LINE L1 -1109 6933 6832 354 348 30 45 chr3 26236481 26236682 -191800476 - MIR SINE MIR -64 198 1 22 56 0 0 chr3 26236893 26236929 -191800229 + AT_rich Low_complexity Low_complexity 1 36 0 387 238 266 0 chr3 26238178 26238321 -191798837 - MER5A DNA MER1_type 0 189 9 288 0 0 0 chr3 26239214 26239246 -191797912 + (TG)n Simple_repeat Simple_repeat 2 33 0 537 152 0 1 chr3 26239976 26240067 -191797091 - MER33 DNA MER1_type -250 74 1 2323 112 3 0 chr3 26240150 26240455 -191796703 + AluSx SINE Alu 1 306 -6 260 341 124 0 chr3 26240894 26241023 -191796135 + MIR SINE MIR 46 190 -72 374 217 0 0 chr3 26241100 26241169 -191795989 - L2 LINE L2 -19 3253 3185 333 0 0 0 chr3 26243526 26243563 -191793595 + (TG)n Simple_repeat Simple_repeat 1 37 0 1167 173 25 30 chr3 26244072 26244309 -191792849 + MER46A DNA MER2_type 1 236 0 432 217 16 31 chr3 26244611 26244740 -191792418 + MLT1J LTR MaLR 385 511 0 253 293 0 0 chr3 26245058 26245116 -191792042 - MIR SINE MIR -114 148 91 290 258 72 0 chr3 26245500 26245597 -191791561 + Charlie8 DNA MER1_type 386 489 -1928 284 226 0 0 chr3 26245597 26245659 -191791499 + Charlie8 DNA MER1_type 2353 2414 -3 1043 154 0 59 chr3 26245899 26246119 -191791039 - MER3 DNA MER1_type 0 209 3 583 221 110 37 chr3 26246324 26246487 -191790671 - MER5B DNA MER1_type -2 176 2 25 31 0 0 chr3 26246614 26246646 -191790512 + AT_rich Low_complexity Low_complexity 1 32 0 349 266 26 87 chr3 26246725 26247007 -191790151 + L2 LINE L2 2734 3053 -219 369 317 92 52 chr3 26247071 26247396 -191789762 + MLT1I LTR MaLR 68 405 -4 2371 41 0 0 chr3 26247631 26247925 -191789233 + L1P LINE L1 4048 4341 -1805 240 35 0 0 chr3 26248226 26248255 -191788903 + (CAA)n Simple_repeat Simple_repeat 2 30 0 463 307 160 0 chr3 26249562 26249774 -191787384 + MIR SINE MIR 17 262 0 2441 226 52 69 chr3 26250222 26251112 -191786046 - L1ME1 LINE L1 -2 6164 5260 2474 24 40 7 chr3 26251112 26251408 -191785750 + AluY SINE Alu 1 306 -5 189 107 0 0 chr3 26251414 26251442 -191785716 + (CATATA)n Simple_repeat Simple_repeat 2 29 0 2441 226 52 69 chr3 26251442 26251540 -191785618 - L1ME1 LINE L1 -911 5255 5157 1298 123 90 14 chr3 26251540 26251817 -191785341 - L1MA8 LINE L1 -10 6281 5984 2441 226 52 69 chr3 26251817 26252306 -191784852 - L1ME1 LINE L1 -1009 5157 4714 251 279 33 49 chr3 26252792 26252914 -191784244 - MIR SINE MIR -16 246 127 1689 73 0 0 chr3 26252991 26253211 -191783947 + L1PA5 LINE L1 5935 6154 0 2468 49 7 10 chr3 26253537 26253841 -191783317 - AluY SINE Alu -8 303 1 324 178 22 67 chr3 26254150 26254240 -191782918 + MER5A DNA MER1_type 3 88 -101 191 279 0 0 chr3 26254806 26254849 -191782309 - MIR3 SINE MIR -11 197 155 343 283 87 0 chr3 26254914 26255052 -191782106 - MER20B DNA MER1_type -628 155 6 201 256 0 0 chr3 26255056 26255099 -191782059 - MIR3 SINE MIR -54 154 112 407 256 111 17 chr3 26255142 26255259 -191781899 + L2 LINE L2 3186 3313 0 480 257 79 53 chr3 26256310 26256462 -191780696 - MLT1I LTR MaLR 0 409 278 2335 144 7 61 chr3 26257802 26258259 -191778899 + MSTB1 LTR MaLR 1 432 0 238 308 59 53 chr3 26259242 26259411 -191777747 - L2 LINE L2 -170 3102 2933 230 359 57 13 chr3 26259564 26259723 -191777435 - L2 LINE L2 -535 2779 2614 1276 242 76 18 chr3 26259732 26260112 -191777046 + MLT1I LTR MaLR 1 402 -7 180 400 27 0 chr3 26260114 26260264 -191776894 - L2 LINE L2 -704 2610 2457 371 263 32 0 chr3 26262597 26262692 -191774466 - L3 LINE CR1 -2 1575 1478 195 162 0 0 chr3 26263516 26263553 -191773605 + T-rich Low_complexity Low_complexity 1 37 0 336 314 125 27 chr3 26263915 26264284 -191772874 - L1ME1 LINE L1 -286 5880 5476 27 49 0 0 chr3 26264816 26264857 -191772301 + AT_rich Low_complexity Low_complexity 1 41 0 220 220 0 0 chr3 26265081 26265131 -191772027 + (TTA)n Simple_repeat Simple_repeat 1 50 0 242 311 59 0 chr3 26265300 26265419 -191771739 - HAL1 LINE L1 -855 1652 1527 475 293 63 59 chr3 26265466 26265767 -191771391 - L1MEc LINE L1 -5211 995 697 207 0 0 0 chr3 26265767 26265790 -191771368 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 475 293 63 59 chr3 26265790 26266154 -191771004 - L1MEc LINE L1 -5509 697 382 231 378 60 32 chr3 26267204 26267453 -191769705 - L2 LINE L2 -530 2784 2529 330 87 0 0 chr3 26267599 26267645 -191769513 + (TAA)n Simple_repeat Simple_repeat 2 47 0 680 242 173 57 chr3 26267649 26268141 -191769017 + MLT1H1 LTR MaLR 7 555 0 473 311 149 22 chr3 26268141 26268363 -191768795 - MIR SINE MIR -3 259 10 1665 255 28 34 chr3 26268365 26268859 -191768299 - LTR16C LTR ERVL 0 491 1 353 262 56 37 chr3 26270283 26270390 -191766768 + MIR3 SINE MIR 15 123 -85 2406 74 0 0 chr3 26271572 26271871 -191765287 - AluSg SINE Alu -11 299 1 294 204 56 92 chr3 26272679 26272821 -191764337 - L1ME LINE L1 -296 5825 5689 594 262 87 58 chr3 26273382 26273515 -191763643 - L2 LINE L2 0 3313 3185 1413 183 55 124 chr3 26273515 26274056 -191763102 - MLT1D LTR MaLR -1 504 1 594 262 87 58 chr3 26274056 26274231 -191762927 - L2 LINE L2 -128 3185 2996 261 275 0 14 chr3 26274285 26274354 -191762804 + MLT1K LTR MaLR 180 247 -341 2497 74 0 0 chr3 26274568 26274877 -191762281 + AluY SINE Alu 1 309 -2 426 20 0 0 chr3 26276204 26276255 -191760903 + (TG)n Simple_repeat Simple_repeat 1 51 0 505 188 137 67 chr3 26277668 26277887 -191759271 + LTR33 LTR ERVL 270 521 0 206 287 0 85 chr3 26278461 26278590 -191758568 + C-rich Low_complexity Low_complexity 2 119 0 785 204 39 29 chr3 26279373 26279579 -191757579 - MER3 DNA MER1_type 0 209 2 196 179 0 36 chr3 26280141 26280197 -191756961 + (CATA)n Simple_repeat Simple_repeat 3 56 0 461 221 41 16 chr3 26281469 26281591 -191755567 + MLT1H LTR MaLR 95 219 -330 630 48 0 0 chr3 26282121 26282204 -191754954 - AluY SINE Alu -227 83 1 260 282 84 46 chr3 26283385 26283516 -191753642 + L2 LINE L2 3178 3313 0 2063 189 47 20 chr3 26283543 26284034 -191753124 - Charlie4a DNA MER1_type 0 508 5 327 323 89 70 chr3 26284591 26284907 -191752251 + HAL1b LINE L1 471 792 -556 24 53 0 0 chr3 26285265 26285303 -191751855 + AT_rich Low_complexity Low_complexity 1 38 0 333 265 111 49 chr3 26285915 26286240 -191750918 + L1MEd LINE L1 561 905 -5214 21 0 0 0 chr3 26286245 26286266 -191750892 + AT_rich Low_complexity Low_complexity 1 21 0 2026 145 3 7 chr3 26286267 26286570 -191750588 + AluSx SINE Alu 1 302 -10 1134 247 86 29 chr3 26288022 26288532 -191748626 - HAL1 LINE L1 -905 1602 1064 1063 194 74 0 chr3 26288541 26288757 -191748401 + MIR SINE MIR 26 257 -5 329 172 0 0 chr3 26288773 26288831 -191748327 - HAL1 LINE L1 -1478 1029 972 266 231 55 0 chr3 26288918 26289009 -191748149 - MLT1E2 LTR MaLR -10 616 521 261 57 0 0 chr3 26289286 26289321 -191747837 + (TG)n Simple_repeat Simple_repeat 2 36 0 1662 190 25 127 chr3 26289321 26289474 -191747684 - MLT1D LTR MaLR -3 502 335 2418 51 6 22 chr3 26289474 26289786 -191747372 - AluY SINE Alu 0 311 5 1662 190 25 127 chr3 26289786 26290191 -191746967 - MLT1D LTR MaLR -170 335 1 402 323 65 58 chr3 26290216 26290628 -191746530 - HAL1 LINE L1 -1741 766 352 260 313 88 18 chr3 26290916 26291143 -191746015 + L1M4 LINE L1 4733 4975 -1171 23 33 0 0 chr3 26291303 26291333 -191745825 + AT_rich Low_complexity Low_complexity 1 30 0 216 152 0 0 chr3 26392271 26392304 -191644854 - MIR SINE MIR -10 252 220 262 301 140 0 chr3 26392891 26392984 -191644174 - MER94 DNA DNA -1 133 28 200 367 42 33 chr3 26393311 26393431 -191643727 + L2 LINE L2 3145 3265 -7 401 273 64 48 chr3 26395060 26395247 -191641911 + MIR3 SINE MIR 19 208 0 237 98 0 0 chr3 26396035 26396076 -191641082 + (A)n Simple_repeat Simple_repeat 1 41 0 213 121 0 0 chr3 26396997 26397030 -191640128 + (A)n Simple_repeat Simple_repeat 1 33 0 459 0 0 0 chr3 26397033 26397084 -191640074 + (CA)n Simple_repeat Simple_repeat 1 51 0 211 170 0 43 chr3 26398313 26398360 -191638798 + CT-rich Low_complexity Low_complexity 3 47 0 474 273 35 42 chr3 26399083 26399226 -191637932 - MIR3 SINE MIR -34 174 33 1035 172 10 34 chr3 26401580 26401789 -191635369 - MER3 DNA MER1_type -5 204 1 210 294 0 0 chr3 26402823 26402874 -191634284 - MIR3 SINE MIR -7 201 151 295 330 56 30 chr3 26402977 26403174 -191633984 - MIR3 SINE MIR -4 204 3 607 286 70 46 chr3 26403681 26403922 -191633236 + MIR SINE MIR 10 256 -6 1325 208 124 67 chr3 26403995 26404471 -191632687 + MLT1D LTR MaLR 3 505 0 246 128 0 0 chr3 26405146 26405185 -191631973 + (A)n Simple_repeat Simple_repeat 1 39 0 1544 196 32 4 chr3 26405693 26405973 -191631185 + AluJb SINE Alu 1 288 -24 330 269 110 44 chr3 26406022 26406204 -191630954 - MARNA DNA Mariner -210 376 183 328 267 114 58 chr3 26406627 26406823 -191630335 + MIR3 SINE MIR 9 214 -48 233 217 0 0 chr3 26407068 26407114 -191630044 + A-rich Low_complexity Low_complexity 5 50 0 318 50 0 0 chr3 26407152 26407192 -191629966 + (GA)n Simple_repeat Simple_repeat 1 40 0 201 258 98 45 chr3 26408194 26408326 -191628832 + L2 LINE L2 1379 1517 -1797 373 125 16 0 chr3 26408449 26408513 -191628645 - MSTD LTR MaLR 0 396 332 491 168 198 0 chr3 26409137 26409238 -191627920 - MER5B DNA MER1_type -57 121 1 321 208 185 77 chr3 26409684 26409778 -191627380 + MER5A DNA MER1_type 35 149 -40 809 112 0 9 chr3 26409778 26409946 -191627212 + FLAM_C SINE Alu 2 168 0 321 208 185 77 chr3 26409946 26409980 -191627178 + MER5A DNA MER1_type 149 178 -11 199 298 0 85 chr3 26410674 26410768 -191626390 - MIR SINE MIR -60 202 117 1196 238 107 56 chr3 26410907 26411357 -191625801 + L2 LINE L2 2841 3313 0 372 293 47 0 chr3 26411355 26411461 -191625697 - MIR SINE MIR -65 197 87 * 725 152 27 38 chr3 26411463 26411647 -191625511 + MER53 DNA DNA 1 182 -7 373 311 43 51 chr3 26412930 26413187 -191623971 + MLT1K LTR MaLR 169 423 -165 269 273 0 0 chr3 26413314 26413380 -191623778 + MLT1K LTR MaLR 517 582 -6 198 238 16 79 chr3 26413397 26413460 -191623698 - MIR SINE MIR -111 151 93 653 231 98 0 chr3 26413541 26413744 -191623414 + MER112 DNA MER1_type 1 223 -37 860 311 202 10 chr3 26414051 26414373 -191622785 + L2 LINE L2 2237 2496 -817 2217 124 21 32 chr3 26414373 26414752 -191622406 - THE1C LTR MaLR 0 375 1 860 311 202 10 chr3 26414752 26415253 -191621905 + L2 LINE L2 2496 3217 -96 370 268 179 0 chr3 26415253 26415421 -191621737 - MER110 LTR ERV1 0 491 294 4232 46 51 2 chr3 26415439 26415984 -191621174 - L1PA7 LINE L1 -8 6146 5575 2106 131 20 0 chr3 26415998 26416303 -191620855 - AluJb SINE Alu -1 311 1 329 192 192 24 chr3 26416303 26416428 -191620730 - MER110A LTR ERV1 -127 341 196 305 226 173 12 chr3 26416489 26416657 -191620501 - MER110A LTR ERV1 -273 195 1 353 233 14 0 chr3 26416674 26416747 -191620411 + MIR SINE MIR 189 262 0 1939 137 60 64 chr3 26417290 26417759 -191619399 - LTR37B LTR ERV1 -1 467 1 207 0 0 0 chr3 26417893 26417916 -191619242 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 233 116 0 23 chr3 26420418 26420461 -191616697 + (TC)n Simple_repeat Simple_repeat 1 42 0 2423 184 39 28 chr3 26420536 26421080 -191616078 + MER44D DNA MER2_type 1 605 0 319 206 98 11 chr3 26421121 26421213 -191615945 - L1MCa LINE L1 -4335 2091 1992 309 183 17 9 chr3 26421218 26421333 -191615825 + (TA)n Simple_repeat Simple_repeat 2 117 0 213 178 0 22 chr3 26422171 26422216 -191614942 - L2 LINE L2 0 3313 3270 236 229 76 93 chr3 26425230 26425293 -191611865 + MER5B DNA MER1_type 1 63 -115 513 0 0 0 chr3 26425293 26425350 -191611808 + (TAGA)n Simple_repeat Simple_repeat 3 59 0 236 229 76 93 chr3 26425350 26425404 -191611754 + MER5B DNA MER1_type 63 116 -62 250 171 0 0 chr3 26425660 26425701 -191611457 - MIR SINE MIR -71 137 97 425 294 46 111 chr3 26425896 26426264 -191610894 - L2 LINE L2 0 3272 2929 836 312 90 16 chr3 26426583 26427151 -191610007 - MLT1L LTR MaLR -2 586 9 548 295 193 0 chr3 26427942 26428149 -191609009 + MIR SINE MIR 1 247 -15 2265 152 9 37 chr3 26428561 26428888 -191608270 + MSTB1 LTR MaLR 5 319 -113 2861 7 0 0 chr3 26428888 26429198 -191607960 - AluYa5 SINE Alu -1 310 1 2265 152 9 37 chr3 26429198 26429303 -191607855 + MSTB1 LTR MaLR 319 425 -7 298 296 112 13 chr3 26429319 26429471 -191607687 - MIR SINE MIR -48 214 48 521 243 73 73 chr3 26429582 26429854 -191607304 - MLT1H LTR MaLR -221 328 57 948 131 65 0 chr3 26430415 26430568 -191606590 + MER5A DNA MER1_type 1 163 -26 30 0 0 0 chr3 26431308 26431338 -191605820 + AT_rich Low_complexity Low_complexity 1 30 0 2251 106 0 3 chr3 26431499 26431813 -191605345 - AluSc SINE Alu 0 309 1 201 196 0 0 chr3 26432465 26432511 -191604647 + GA-rich Low_complexity Low_complexity 4 49 0 31 0 0 0 chr3 26432557 26432588 -191604570 + AT_rich Low_complexity Low_complexity 1 31 0 241 333 95 24 chr3 26433123 26433249 -191603909 + L2 LINE L2 3138 3272 0 473 249 44 68 chr3 26434275 26434480 -191602678 + MIR SINE MIR 8 207 -55 232 195 0 0 chr3 26434544 26434585 -191602573 - Alu SINE Alu -176 126 86 795 230 83 15 chr3 26434585 26434789 -191602369 - AluJo SINE Alu -92 220 3 1279 208 27 46 chr3 26434847 26435213 -191601945 + L1M4 LINE L1 3976 4334 -1812 466 303 7 14 chr3 26435214 26435359 -191601799 + MIR SINE MIR 110 253 -9 735 259 162 44 chr3 26435375 26435893 -191601265 + L3 LINE CR1 858 1436 -141 267 327 35 9 chr3 26435898 26436011 -191601147 - MIR SINE MIR -111 151 36 7483 28 2 3 chr3 26437447 26438692 -191598466 + L1PA4 LINE L1 4908 6151 -4 326 294 33 0 chr3 26438920 26439012 -191598146 + MIR SINE MIR 53 147 -61 202 200 0 0 chr3 26439259 26439299 -191597859 + CT-rich Low_complexity Low_complexity 2 41 0 296 217 75 19 chr3 26439627 26439733 -191597425 - MER103 DNA DNA -45 121 10 19275 158 21 6 chr3 26439767 26443216 -191593942 + L1M1 LINE L1 10 3512 -4053 2275 97 15 59 chr3 26443216 26443608 -191593550 + L1MA1 LINE L1 5928 6302 0 19275 158 21 6 chr3 26443608 26443628 -191593530 + L1M1 LINE L1 3512 3530 -4035 260 268 37 0 chr3 26443890 26443972 -191593186 - MLT1K LTR MaLR -23 565 481 679 288 57 5 chr3 26444013 26444225 -191592933 - MLT1K LTR MaLR -186 402 180 344 181 14 14 chr3 26444254 26444326 -191592832 - MLT1K LTR MaLR -505 83 12 459 271 8 31 chr3 26444938 26445067 -191592091 - L2 LINE L2 0 3313 3188 1959 137 3 40 chr3 26445228 26445578 -191591580 + MER1B DNA MER1_type 1 337 0 21 36 0 0 chr3 26447832 26447860 -191589298 + AT_rich Low_complexity Low_complexity 1 28 0 238 233 86 55 chr3 26448885 26449048 -191588110 + HAL1 LINE L1 1002 1169 -1338 771 273 101 12 chr3 26449070 26449557 -191587601 + HAL1 LINE L1 1234 1763 -744 311 233 10 124 chr3 26450092 26450294 -191586864 + LTR16A LTR ERVL 266 444 -6 320 301 0 0 chr3 26450452 26450545 -191586613 + HAL1 LINE L1 1823 1915 -592 340 217 174 9 chr3 26450635 26450750 -191586408 + MIR SINE MIR 79 212 -50 22 35 0 0 chr3 26452189 26452218 -191584940 + AT_rich Low_complexity Low_complexity 1 29 0 191 61 30 0 chr3 26453151 26453184 -191583974 + (CA)n Simple_repeat Simple_repeat 2 35 0 1435 237 122 37 chr3 26453474 26453697 -191583461 + L2 LINE L2 2427 2630 -683 1922 149 7 13 chr3 26453697 26453998 -191583160 + AluSq SINE Alu 1 299 -14 1435 237 122 37 chr3 26453998 26454355 -191582803 + L2 LINE L2 2630 3062 -251 572 210 198 0 chr3 26455047 26455209 -191581949 + L2 LINE L2 3103 3296 -17 1702 169 10 24 chr3 26455217 26455507 -191581651 + AluJo SINE Alu 1 286 -26 279 0 0 0 chr3 26455509 26455540 -191581618 + (TG)n Simple_repeat Simple_repeat 2 32 0 223 237 250 0 chr3 26456010 26456086 -191581072 - MIR SINE MIR 0 262 168 1558 205 103 140 chr3 26456460 26456841 -191580317 + Charlie7 DNA MER1_type 490 884 -1728 2399 87 10 10 chr3 26456841 26457153 -191580005 - AluSq SINE Alu -1 312 1 1558 205 103 140 chr3 26457153 26458040 -191579118 + Charlie7 DNA MER1_type 884 1711 -901 2781 0 0 0 chr3 26458984 26459282 -191577876 - AluYa5 SINE Alu -13 298 1 1386 19 0 0 chr3 26459409 26459564 -191577594 - AluY SINE Alu 0 311 157 1380 233 94 40 chr3 26459564 26460116 -191577042 + Charlie7 DNA MER1_type 1855 2455 -157 2385 97 0 0 chr3 26460116 26460416 -191576742 - AluSc SINE Alu -9 300 1 1380 233 94 40 chr3 26460416 26460566 -191576592 + Charlie7 DNA MER1_type 2455 2595 -17 711 269 0 12 chr3 26460577 26460748 -191576410 + MER5A DNA MER1_type 1 169 -20 659 236 152 11 chr3 26461546 26461737 -191575421 - MIR SINE MIR -18 244 27 569 79 11 22 chr3 26463277 26463366 -191573792 - L1PB4 LINE L1 -556 5600 5513 * 815 153 60 22 chr3 26463360 26463543 -191573615 + L1PB4 LINE L1 5587 5776 -380 2090 161 15 10 chr3 26464838 26465229 -191571929 + L1PB4 LINE L1 5763 6155 -1 864 268 9 18 chr3 26465302 26465522 -191571636 - MIR SINE MIR 0 262 45 2259 121 0 0 chr3 26465586 26465891 -191571267 + AluSx SINE Alu 1 305 -7 309 278 0 0 chr3 26465892 26465964 -191571194 - MIR SINE MIR -189 73 2 291 289 77 51 chr3 26466779 26466935 -191570223 + MLT1L LTR MaLR 425 584 -31 784 198 97 34 chr3 26467149 26467356 -191569802 - LTR50 LTR ERVL -575 220 1 450 316 40 20 chr3 26468568 26468720 -191568438 + MIR SINE MIR 12 166 -96 325 268 149 57 chr3 26468735 26469105 -191568053 - MLT1J LTR MaLR -33 478 75 286 194 97 43 chr3 26469161 26469254 -191567904 + MIR SINE MIR 158 255 -7 689 272 93 57 chr3 26469314 26469615 -191567543 + MLT1I LTR MaLR 98 409 0 392 303 14 28 chr3 26470196 26470341 -191566817 - MIR SINE MIR -19 243 101 268 365 19 0 chr3 26470376 26470480 -191566678 - MIR SINE MIR -153 109 4 23 54 0 0 chr3 26470958 26470995 -191566163 + AT_rich Low_complexity Low_complexity 1 37 0 315 0 0 0 chr3 26471051 26471086 -191566072 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 1062 267 29 3 chr3 26471151 26471466 -191565692 + L1MC/D LINE L1 5454 5776 -2032 251 219 31 47 chr3 26471696 26471760 -191565398 - L2 LINE L2 0 3272 3210 18537 131 21 11 chr3 26471844 26474863 -191562295 + L1MA3 LINE L1 17 3065 -4500 23675 37 42 3 chr3 26474869 26477987 -191559171 + L1P LINE L1 4 3244 -2902 1712 19 14 14 chr3 26478011 26478224 -191558934 + L1PA2 LINE L1 5943 6155 0 619 124 0 8 chr3 26478225 26478346 -191558812 + L1MA3 LINE L1 3053 3172 -4393 * 14935 159 19 10 chr3 26478335 26482611 -191554547 + L1MA3 LINE L1 3411 7724 0 517 245 9 9 chr3 26483200 26483306 -191553852 - L2 LINE L2 0 3313 3208 2358 180 102 21 chr3 26483598 26484094 -191553064 - MLT1F1 LTR MaLR -2 565 24 2248 110 0 10 chr3 26484094 26484395 -191552763 - AluSx SINE Alu -14 298 1 2358 180 102 21 chr3 26484395 26484419 -191552739 - MLT1F1 LTR MaLR -543 24 3 569 265 50 69 chr3 26485223 26485483 -191551675 + LTR67 LTR ERVL 40 294 -263 249 269 46 31 chr3 26485582 26485712 -191551446 + LTR67 LTR ERVL 352 483 -74 2108 117 53 39 chr3 26486039 26486398 -191550760 + THE1B LTR MaLR 1 364 0 2296 92 10 0 chr3 26486645 26486948 -191550210 - AluY SINE Alu -5 306 1 502 272 38 19 chr3 26486980 26487138 -191550020 + L2 LINE L2 3153 3313 0 307 347 105 0 chr3 26487209 26487376 -191549782 - MIR3 SINE MIR -59 149 3 478 303 23 46 chr3 26488080 26488352 -191548806 + MLT1I LTR MaLR 51 320 -89 362 243 39 10 chr3 26488359 26488462 -191548696 + MLT1I LTR MaLR 442 547 -2 520 281 58 36 chr3 26490117 26490256 -191546902 - MER91A DNA MER1_type -36 160 19 1196 229 134 58 chr3 26490547 26491108 -191546050 + MLT1E LTR MaLR 1 515 -27 925 267 92 44 chr3 26491237 26491626 -191545532 - MLT1E LTR MaLR -185 408 1 199 344 79 32 chr3 26491693 26491882 -191545276 + L2 LINE L2 2558 2755 -559 2456 136 23 59 chr3 26491911 26491952 -191545206 - MSTB LTR MaLR -1 425 384 2178 132 3 0 chr3 26491952 26492262 -191544896 + AluSx SINE Alu 1 311 -1 2456 136 23 59 chr3 26492262 26492661 -191544497 - MSTB LTR MaLR -42 384 1 235 290 51 23 chr3 26492691 26492815 -191544343 + L2 LINE L2 2858 2985 -287 2217 101 0 31 chr3 26492967 26493284 -191543874 - AluSx SINE Alu -5 307 1 362 246 237 9 chr3 26494019 26494133 -191543025 - MIR SINE MIR -46 216 77 191 256 56 44 chr3 26495065 26495155 -191542003 + L2 LINE L2 2668 2758 -556 768 213 21 53 chr3 26495168 26495356 -191541802 - MER5A DNA MER1_type -6 183 2 1135 314 156 28 chr3 26495389 26497297 -191539861 + L2 LINE L2 833 3054 -218 697 143 0 0 chr3 26497395 26497493 -191539665 + AluJb SINE Alu 196 293 -19 217 269 39 39 chr3 26497520 26497598 -191539560 + L2 LINE L2 3235 3312 -1 767 256 77 16 chr3 26497662 26497908 -191539250 - MIR SINE MIR -1 261 1 860 220 55 22 chr3 26498036 26498218 -191538940 - MER5A DNA MER1_type -1 188 1 493 312 19 39 chr3 26498489 26498694 -191538464 - MIR SINE MIR -50 212 12 1630 183 0 27 chr3 26500827 26501127 -191536031 + AluJo SINE Alu 1 292 -20 2349 118 0 0 chr3 26501186 26501499 -191535659 + AluSq SINE Alu 1 313 0 274 258 80 20 chr3 26501721 26501872 -191535286 + L2 LINE L2 2511 2670 -644 1163 182 104 9 chr3 26501923 26502154 -191535004 + AluJo SINE Alu 1 253 -59 241 295 38 19 chr3 26502155 26502260 -191534898 + L2 LINE L2 2701 2807 -507 227 360 0 0 chr3 26502920 26503009 -191534149 - L2 LINE L2 0 3313 3225 484 302 102 42 chr3 26503144 26503584 -191533574 + L1ME4a LINE L1 4219 4720 -1426 2306 237 43 38 chr3 26503584 26504171 -191532987 - MLT1E LTR MaLR 0 593 4 484 302 102 42 chr3 26504171 26504445 -191532713 + L1ME4a LINE L1 4720 4976 -1170 259 283 111 0 chr3 26504604 26504703 -191532455 - MIR SINE MIR -39 223 114 2627 224 14 36 chr3 26504733 26505313 -191531845 - MLT1F1 LTR MaLR 0 567 1 180 194 28 0 chr3 26505313 26505349 -191531809 - MIR SINE MIR -210 52 16 499 120 10 100 chr3 26505389 26505489 -191531669 + MER7C DNA MER2_type 62 152 -450 * 1603 131 8 0 chr3 26505477 26505714 -191531444 + MER7C DNA MER2_type 364 602 0 447 332 61 32 chr3 26505734 26506114 -191531044 + L1ME4a LINE L1 4967 5363 -783 852 235 0 0 chr3 26506117 26506287 -191530871 + AluJb SINE Alu 138 307 -5 855 267 96 54 chr3 26506319 26506362 -191530796 + L1ME4a LINE L1 5391 5431 -690 1670 151 17 41 chr3 26506362 26506653 -191530505 + AluSx SINE Alu 1 284 -28 213 39 0 0 chr3 26506660 26506686 -191530472 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 855 267 96 54 chr3 26506686 26507279 -191529879 + L1ME4a LINE L1 5436 6062 -59 324 302 38 20 chr3 26508870 26509011 -191528147 + MIR SINE MIR 16 160 -64 245 91 0 23 chr3 26510200 26510244 -191526914 - MADE1 DNA Mariner -37 43 1 263 299 103 38 chr3 26510244 26510428 -191526730 - MLT1J2 LTR MaLR -2 448 253 416 293 0 32 chr3 26511099 26511222 -191525936 + MIR3 SINE MIR 49 167 -41 2111 132 0 0 chr3 26511296 26511585 -191525573 - AluSc SINE Alu -20 289 1 324 335 45 39 chr3 26512205 26512360 -191524798 - L2 LINE L2 -534 2780 2625 926 203 122 27 chr3 26512655 26512950 -191524208 - MER5C DNA MER1_type -1 323 1 196 262 213 21 chr3 26513543 26513684 -191523474 - MIR SINE MIR -2 260 93 2625 163 29 98 chr3 26513872 26513962 -191523196 - L1MD3 LINE L1 0 7995 7900 258 114 23 0 chr3 26513962 26514006 -191523152 + Charlie1 DNA MER1_type 2283 2327 -434 2625 163 29 98 chr3 26514006 26514031 -191523127 - L1MD3 LINE L1 -95 7900 7875 3790 71 2 0 chr3 26514031 26514496 -191522662 - L1PA8 LINE L1 -1 6171 5706 2625 163 29 98 chr3 26514496 26515026 -191522132 - L1MD3 LINE L1 -120 7875 7188 505 202 78 98 chr3 26515258 26515451 -191521707 + MLT1J LTR MaLR 7 195 -316 1501 191 65 46 chr3 26515504 26515917 -191521241 - Charlie4a DNA MER1_type 0 508 88 7240 151 84 12 chr3 26516184 26516571 -191520587 - Charlie1a DNA MER1_type -1310 1451 1093 567 29 0 0 chr3 26516571 26516640 -191520518 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 7240 151 84 12 chr3 26516640 26517605 -191519553 - Charlie1a DNA MER1_type -1668 1093 1 1007 204 21 39 chr3 26517754 26518034 -191519124 + pTR5 LTR ERV1 743 1017 -1421 6688 99 127 102 chr3 26518324 26519713 -191517445 + pTR5 LTR ERV1 1015 2438 0 760 197 27 58 chr3 26520117 26520179 -191516979 - MER5A DNA MER1_type 0 189 127 2357 88 3 3 chr3 26520179 26520484 -191516674 + AluSp SINE Alu 1 305 -8 760 197 27 58 chr3 26520484 26520609 -191516549 - MER5A DNA MER1_type -62 127 8 821 284 32 28 chr3 26521128 26521292 -191515866 + MIR SINE MIR 8 175 -87 1412 159 45 139 chr3 26521292 26521695 -191515463 + MLT1A1 LTR MaLR 1 365 0 821 284 32 28 chr3 26521695 26521780 -191515378 + MIR SINE MIR 175 258 -4 1819 151 36 20 chr3 26521902 26522206 -191514952 - AluSq SINE Alu -4 309 1 2288 136 40 11 chr3 26522795 26523149 -191514009 - THE1B LTR MaLR 0 364 1 226 364 23 11 chr3 26523259 26523347 -191513811 + L2 LINE L2 323 411 -2903 254 382 31 18 chr3 26523386 26523611 -191513547 + L2 LINE L2 2189 2416 -898 1354 192 16 49 chr3 26523611 26523832 -191513326 + MLT1F LTR MaLR 255 429 -76 2438 87 3 0 chr3 26523832 26524131 -191513027 - AluSp SINE Alu -13 300 1 1354 192 16 49 chr3 26524131 26524200 -191512958 + MLT1F LTR MaLR 429 499 -6 184 313 0 0 chr3 26524203 26524251 -191512907 - L2 LINE L2 -69 3244 3197 491 359 90 16 chr3 26524347 26524712 -191512446 + L2 LINE L2 711 1102 -2212 512 269 20 27 chr3 26524801 26524950 -191512208 + LTR16C LTR ERVL 85 232 -259 319 324 55 28 chr3 26525262 26525444 -191511714 + L2 LINE L2 1891 2077 -1237 214 301 65 41 chr3 26525487 26525610 -191511548 + L2 LINE L2 2550 2675 -639 1648 250 72 58 chr3 26526205 26526788 -191510370 - MLT1E LTR MaLR 0 593 3 1460 244 140 32 chr3 26526907 26527399 -191509759 + MLT1H LTR MaLR 1 545 -4 215 53 0 53 chr3 26528163 26528201 -191508957 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 1121 182 36 9 chr3 26528528 26528753 -191508405 - MER96B DNA MER1_type? -3 414 184 2423 89 0 0 chr3 26529970 26530272 -191506886 - AluSq SINE Alu -11 302 1 2452 86 0 0 chr3 26530861 26531163 -191505995 - AluSx SINE Alu -10 302 1 329 296 55 27 chr3 26531195 26531452 -191505706 - L1M4 LINE L1 -3045 3101 2838 2862 163 48 6 chr3 26531458 26531981 -191505177 + L1MB7 LINE L1 5639 6183 -1 302 164 33 0 chr3 26532124 26532185 -191504973 - L1ME3A LINE L1 -17 6153 6091 2582 46 0 3 chr3 26532272 26532578 -191504580 - AluY SINE Alu -6 305 1 257 208 0 0 chr3 26532593 26532641 -191504517 + LTR16A1 LTR ERVL 410 457 0 224 284 25 37 chr3 26533017 26533098 -191504060 + MIR SINE MIR 70 149 -59 632 234 137 37 chr3 26533865 26534215 -191502943 + L1MC4 LINE L1 7658 8042 0 223 162 0 0 chr3 26534299 26534336 -191502822 + L2 LINE L2 3020 3056 -257 287 264 61 91 chr3 26534805 26534912 -191502246 - L2 LINE L2 0 3313 3213 906 225 115 10 chr3 26534912 26535112 -191502046 + MER58A DNA MER1_type 3 223 -1 287 264 61 91 chr3 26535112 26535201 -191501957 - L2 LINE L2 -100 3213 3123 375 345 52 15 chr3 26535390 26535657 -191501501 - L2 LINE L2 -411 2903 2627 1331 263 167 30 chr3 26535663 26536183 -191500975 + MLT2F LTR ERVL 3 612 -51 2101 108 0 4 chr3 26536183 26536482 -191500676 - AluSc SINE Alu 0 298 1 1331 263 167 30 chr3 26536482 26536534 -191500624 + MLT2F LTR ERVL 612 655 -8 246 324 15 0 chr3 26536538 26536606 -191500552 - L2 LINE L2 -687 2627 2559 672 285 40 60 chr3 26536620 26536918 -191500240 + MLT1I LTR MaLR 33 324 -85 229 265 176 10 chr3 26536957 26537059 -191500099 - L2 LINE L2 -742 2572 2454 948 260 150 59 chr3 26537917 26538300 -191498858 + MLT2F LTR ERVL 101 544 -119 2451 76 3 0 chr3 26538300 26538601 -191498557 + AluY SINE Alu 1 302 -9 948 260 150 59 chr3 26538601 26538729 -191498429 + MLT2F LTR ERVL 544 659 -4 4265 169 42 34 chr3 26539684 26539890 -191497268 + L1MB4 LINE L1 5263 5466 -714 198 0 0 0 chr3 26539890 26539912 -191497246 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4265 169 42 34 chr3 26539912 26540590 -191496568 + L1MB4 LINE L1 5466 6154 -26 23 54 0 0 chr3 26541026 26541063 -191496095 + AT_rich Low_complexity Low_complexity 1 37 0 1171 197 13 69 chr3 26541951 26542255 -191494903 + L1M3e LINE L1 1 287 -6743 2130 260 48 68 chr3 26542261 26543163 -191493995 + L1M3e LINE L1 1133 2018 -5012 1892 176 0 16 chr3 26543163 26543469 -191493689 + AluJb SINE Alu 1 301 -11 2130 260 48 68 chr3 26543469 26543497 -191493661 + L1M3e LINE L1 2018 2045 -4985 242 305 78 31 chr3 26743913 26744041 -191293117 - L2 LINE L2 0 3272 3139 240 306 0 0 chr3 26744889 26744951 -191292207 + (TG)n Simple_repeat Simple_repeat 1 62 0 22 35 0 0 chr3 26747392 26747421 -191289737 + AT_rich Low_complexity Low_complexity 1 29 0 1150 197 178 24 chr3 26748290 26748661 -191288497 - MSTA LTR MaLR 0 428 1 703 268 61 7 chr3 26749330 26749610 -191287548 + L1M4 LINE L1 4871 5165 -981 636 205 0 0 chr3 26749611 26749723 -191287435 + FLAM_A SINE Alu 6 117 -25 326 156 10 15 chr3 26749855 26749937 -191287221 - Alu SINE Alu -2 300 242 2204 94 0 3 chr3 26750011 26750334 -191286824 + AluSg SINE Alu 1 322 0 2351 169 28 102 chr3 26750343 26750513 -191286645 + L1MD3 LINE L1 7421 7602 -393 1008 77 0 7 chr3 26750513 26750656 -191286502 + L1PA4 LINE L1 6012 6153 -2 2351 169 28 102 chr3 26750656 26750705 -191286453 + L1MD3 LINE L1 7602 7653 -342 189 0 0 0 chr3 26750705 26750726 -191286432 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 2351 169 28 102 chr3 26750726 26751115 -191286043 + L1MD3 LINE L1 7653 7985 -10 236 193 277 12 chr3 26751336 26751419 -191285739 + L1MEd LINE L1 46 150 -5969 455 345 131 25 chr3 26751469 26751918 -191285240 + L1MEd LINE L1 244 740 -5379 296 299 78 42 chr3 26754254 26754421 -191282737 + MIR SINE MIR 39 211 -51 229 259 12 86 chr3 26754458 26754539 -191282619 + L2 LINE L2 3239 3313 0 21 57 0 0 chr3 26755401 26755436 -191281722 + AT_rich Low_complexity Low_complexity 1 35 0 993 96 0 0 chr3 26755852 26755977 -191281181 - AluSc SINE Alu -19 290 166 22 35 0 0 chr3 26756815 26756844 -191280314 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr3 26757491 26757514 -191279644 + AT_rich Low_complexity Low_complexity 1 23 0 192 40 0 0 chr3 26760989 26761014 -191276144 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 202 68 68 68 chr3 26763546 26763590 -191273568 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr3 26763890 26763911 -191273247 + AT_rich Low_complexity Low_complexity 1 21 0 34 0 0 0 chr3 26765842 26765876 -191271282 + AT_rich Low_complexity Low_complexity 1 34 0 204 259 0 35 chr3 26766341 26766399 -191270759 - L2 LINE L2 -2 3311 3256 28 29 0 0 chr3 26767769 26767804 -191269354 + AT_rich Low_complexity Low_complexity 1 35 0 1851 196 8 30 chr3 26775626 26775999 -191261159 + MLT1A1 LTR MaLR 1 365 0 2702 143 7 2 chr3 26778619 26779044 -191258114 - MSTC LTR MaLR 0 428 2 399 335 40 46 chr3 26779772 26779924 -191257234 + L2 LINE L2 3077 3227 -45 709 165 98 37 chr3 26780054 26780218 -191256940 - MER3 DNA MER1_type -81 128 2 521 244 16 8 chr3 26781527 26781650 -191255508 + MER5B DNA MER1_type 53 176 -2 631 194 21 7 chr3 26782677 26782821 -191254337 + L1MB4 LINE L1 6032 6177 -3 22 56 0 0 chr3 26783389 26783425 -191253733 + AT_rich Low_complexity Low_complexity 1 36 0 4539 76 26 9 chr3 26784495 26785603 -191251555 - MER11A LTR ERVK 0 1266 1 739 368 48 25 chr3 26785942 26786336 -191250822 - L2 LINE L2 -1 3271 2869 254 254 8 142 chr3 26786412 26786546 -191250612 - MER102a DNA MER1_type 0 330 215 1761 171 34 3 chr3 26786752 26787080 -191250078 - MER44D DNA MER2_type -1 608 1 496 305 0 8 chr3 26787606 26787734 -191249424 + MIR SINE MIR 30 156 -106 249 288 61 0 chr3 26788430 26788496 -191248662 + MIR SINE MIR 81 150 -58 253 326 11 11 chr3 26788505 26788594 -191248564 - MER5A DNA MER1_type -8 181 93 225 280 0 0 chr3 26788755 26788805 -191248353 - MLT1K LTR MaLR -111 477 428 618 341 39 33 chr3 26788900 26789205 -191247953 - MLT1K LTR MaLR -253 335 29 1821 126 169 21 chr3 26789445 26789818 -191247340 - MSTA LTR MaLR 0 428 1 703 268 61 7 chr3 26790487 26790767 -191246391 + L1M4 LINE L1 4871 5165 -981 636 205 0 0 chr3 26790768 26790880 -191246278 + FLAM_A SINE Alu 6 117 -25 813 100 0 0 chr3 26791109 26791219 -191245939 + AluSg/x SINE Alu 197 306 -4 272 244 13 13 chr3 26791407 26791485 -191245673 - MLT1K LTR MaLR -323 265 188 27 0 0 0 chr3 26791844 26791871 -191245287 + AT_rich Low_complexity Low_complexity 1 27 0 1965 132 94 29 chr3 26792267 26792609 -191244549 - THE1B LTR MaLR 0 364 1 21 82 0 0 chr3 26793906 26793955 -191243203 + AT_rich Low_complexity Low_complexity 1 49 0 349 347 56 20 chr3 26794463 26794659 -191242499 + HAL1b LINE L1 505 707 -641 24 53 0 0 chr3 26795546 26795584 -191241574 + AT_rich Low_complexity Low_complexity 1 38 0 29 47 0 0 chr3 26795636 26795679 -191241479 + AT_rich Low_complexity Low_complexity 1 43 0 337 278 141 56 chr3 26796137 26796407 -191240751 + L1ME LINE L1 4633 4925 -1221 360 249 112 13 chr3 26797071 26797372 -191239786 + L1MCc LINE L1 1281 1848 -5068 332 325 57 28 chr3 26797419 26797631 -191239527 + L1ME LINE L1 5508 5725 -396 791 252 59 14 chr3 26797633 26797855 -191239303 - MIR SINE MIR -28 234 3 533 213 126 44 chr3 26798136 26798319 -191238839 + MIR SINE MIR 3 200 -62 267 286 98 11 chr3 26799882 26800068 -191237090 + MIR SINE MIR 55 255 -7 191 382 114 30 chr3 26800215 26800477 -191236681 - L2 LINE L2 -20 3252 2969 1259 169 40 9 chr3 26800501 26800726 -191236432 - MER8 DNA MER2_type 0 239 8 184 340 0 0 chr3 26800793 26800846 -191236312 + MIR SINE MIR 89 141 -67 605 204 178 6 chr3 26801218 26801375 -191235783 + MER5A DNA MER1_type 3 186 -3 351 277 129 0 chr3 26802102 26802203 -191234955 + MER81 DNA DNA 1 114 0 650 211 177 0 chr3 26802285 26802432 -191234726 + MER5A DNA MER1_type 7 179 -10 2268 98 20 0 chr3 26802823 26803129 -191234029 + AluSp SINE Alu 2 313 0 917 168 37 42 chr3 26803408 26803598 -191233560 - MER5A DNA MER1_type 0 189 1 457 239 68 8 chr3 26803839 26803956 -191233202 - MER5C DNA MER1_type -200 124 1 1829 157 83 52 chr3 26804481 26804902 -191232256 - MER63B DNA MER1_type 0 436 3 969 264 84 6 chr3 26805178 26805602 -191231556 + L1MC3 LINE L1 6233 6359 0 385 245 180 7 chr3 26806053 26806192 -191230966 - MER5A DNA MER1_type 0 189 27 21 82 0 0 chr3 26807605 26807654 -191229504 + AT_rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chr3 26807884 26807913 -191229245 + AT_rich Low_complexity Low_complexity 1 29 0 241 290 83 21 chr3 26808667 26808812 -191228346 + L1ME LINE L1 5766 5919 -202 197 355 48 83 chr3 26809403 26809716 -191227442 - L2 LINE L2 -13 3259 2958 218 296 95 35 chr3 26809927 26810096 -191227062 + L2 LINE L2 2007 2185 -1129 3280 209 58 71 chr3 26810141 26810582 -191226576 + L1MC4a LINE L1 6730 7176 -632 2153 101 0 3 chr3 26810582 26810869 -191226289 + AluSg SINE Alu 1 286 -24 3280 209 58 71 chr3 26810869 26811084 -191226074 + L1MC4a LINE L1 7176 7392 -416 1008 77 0 7 chr3 26811084 26811227 -191225931 + L1PA4 LINE L1 6012 6153 -2 3280 209 58 71 chr3 26811227 26811276 -191225882 + L1MC4a LINE L1 7392 7440 -368 189 0 0 0 chr3 26811276 26811297 -191225861 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 3280 209 58 71 chr3 26811297 26811683 -191225475 + L1MC4a LINE L1 7440 7808 0 241 193 277 12 chr3 26811907 26811990 -191225168 + L1MEd LINE L1 46 150 -5969 1062 306 123 22 chr3 26812040 26812884 -191224274 + L1MEd LINE L1 244 1172 -4947 347 300 0 0 chr3 26812960 26813050 -191224108 - L1MC4 LINE L1 -1339 6703 6614 312 219 73 0 chr3 26813055 26813137 -191224021 - L1MC4 LINE L1 -1340 6702 6615 * 316 259 47 0 chr3 26813109 26813194 -191223964 - L1MC4 LINE L1 -1340 6702 6614 370 223 0 43 chr3 26813214 26813308 -191223850 - L1MC4 LINE L1 -1339 6703 6614 1427 109 45 5 chr3 26813981 26814201 -191222957 - MER30 DNA MER1_type 0 230 2 1278 216 41 44 chr3 26814210 26814552 -191222606 + MER58B DNA MER1_type 1 341 0 24 0 0 0 chr3 26816002 26816026 -191221132 + AT_rich Low_complexity Low_complexity 1 24 0 603 306 19 19 chr3 26816323 26816588 -191220570 + L1ME4a LINE L1 5491 5755 -366 252 244 244 10 chr3 26816596 26816789 -191220369 + L1ME4a LINE L1 5803 6040 -81 363 44 0 0 chr3 26816915 26816960 -191220198 + (CA)n Simple_repeat Simple_repeat 2 46 0 256 270 40 30 chr3 26816978 26817078 -191220080 - L1MC4 LINE L1 -1927 5881 5781 363 298 263 29 chr3 26817183 26817639 -191219519 + L2 LINE L2 966 1528 -1786 352 307 12 102 chr3 26817639 26818049 -191219109 - L1M4 LINE L1 -2392 3754 3382 810 232 40 13 chr3 26818820 26818866 -191218292 - Charlie4 DNA MER1_type -1718 243 200 2320 147 0 3 chr3 26818866 26819233 -191217925 + MER47A DNA MER2_type 1 366 0 810 232 40 13 chr3 26819233 26819410 -191217748 - Charlie4 DNA MER1_type -1761 200 14 454 313 27 46 chr3 26819609 26819653 -191217505 - HAL1 LINE L1 -741 1766 1723 291 54 0 0 chr3 26819653 26819690 -191217468 + (TA)n Simple_repeat Simple_repeat 2 38 0 454 313 27 46 chr3 26819690 26820016 -191217142 - HAL1 LINE L1 -784 1723 1403 421 302 64 53 chr3 26820030 26820295 -191216863 - L1MEd LINE L1 -4864 1255 988 1115 191 0 43 chr3 26820819 26821049 -191216109 - AluJo SINE Alu -92 220 1 22 0 0 0 chr3 26821068 26821090 -191216068 + AT_rich Low_complexity Low_complexity 1 22 0 486 311 12 81 chr3 26822410 26822732 -191214426 - L2 LINE L2 -19 3294 2995 474 65 0 0 chr3 26823001 26823063 -191214095 + (TA)n Simple_repeat Simple_repeat 1 62 0 287 309 44 22 chr3 26824545 26824681 -191212477 - L2 LINE L2 -219 3053 2915 463 316 35 12 chr3 26825356 26825527 -191211631 + MER5A DNA MER1_type 15 189 0 1686 275 104 34 chr3 26826380 26826835 -191210323 - MLT2E LTR ERVL -4 624 120 2054 100 35 7 chr3 26826835 26827124 -191210034 - AluSx SINE Alu -15 297 1 1686 275 104 34 chr3 26827124 26827235 -191209923 - MLT2E LTR ERVL -508 120 18 905 258 84 70 chr3 26827624 26828107 -191209051 - MLT1H LTR MaLR -15 534 5 878 203 55 51 chr3 26828227 26828444 -191208714 + MER20 DNA MER1_type 2 219 0 338 246 127 52 chr3 26830665 26830799 -191206359 + MIR SINE MIR 119 262 0 219 88 0 0 chr3 26833597 26833631 -191203527 + (CA)n Simple_repeat Simple_repeat 1 34 0 438 229 95 78 chr3 26834999 26835346 -191201812 - L1M LINE L1 -751 5413 5042 2339 222 54 2 chr3 26835357 26835915 -191201243 + L1ME2 LINE L1 5395 5981 -183 1876 184 14 23 chr3 26835915 26836263 -191200895 + MLT1A1 LTR MaLR 3 347 -18 491 291 24 0 chr3 26836285 26836450 -191200708 + L1ME2 LINE L1 5994 6162 -2 338 308 174 5 chr3 26836496 26836691 -191200467 + MIR SINE MIR 3 230 -32 313 261 73 37 chr3 26836965 26837161 -191199997 + MER63 DNA MER1_type 5 1687 -1 347 258 108 97 chr3 26837794 26838011 -191199147 + L1ME4a LINE L1 5628 5841 -280 2057 115 0 0 chr3 26838011 26838297 -191198861 - AluY SINE Alu -25 286 1 347 258 108 97 chr3 26838297 26838533 -191198625 + L1ME4a LINE L1 5841 6086 -35 447 266 24 48 chr3 26838905 26839112 -191198046 - L1MC4 LINE L1 -1 8041 7840 2114 240 59 38 chr3 26839172 26839863 -191197295 - L1ME2 LINE L1 -12 6152 5447 248 263 0 0 chr3 26840360 26840417 -191196741 + L2 LINE L2 3255 3311 -2 784 227 129 5 chr3 26840420 26840614 -191196544 + MIR SINE MIR 13 230 -32 2856 264 94 30 chr3 26843325 26843505 -191193653 - L2 LINE L2 -2 3311 3144 1796 168 0 0 chr3 26843505 26843796 -191193362 + AluSx SINE Alu 12 302 -10 2856 264 94 30 chr3 26843796 26844789 -191192369 - L2 LINE L2 -169 3144 2032 2224 112 0 3 chr3 26844789 26845093 -191192065 + AluSg SINE Alu 1 303 -7 2856 264 94 30 chr3 26845093 26845291 -191191867 - L2 LINE L2 -1281 2032 1848 436 254 131 89 chr3 26847080 26847438 -191189720 - LTR16A1 LTR ERVL 0 457 85 287 318 154 37 chr3 26847534 26847748 -191189410 - MIR SINE MIR -10 252 14 561 280 54 64 chr3 26847814 26848128 -191189030 + L3b LINE CR1 1103 1413 -170 313 36 36 36 chr3 26848150 26848205 -191188953 + (GAAAA)n Simple_repeat Simple_repeat 3 57 0 345 207 0 0 chr3 26848718 26848800 -191188358 + (TA)n Simple_repeat Simple_repeat 1 82 0 581 313 45 40 chr3 26849324 26849513 -191187645 - MIR SINE MIR -9 253 61 1568 207 102 8 chr3 26849513 26849875 -191187283 + MSTD LTR MaLR 1 396 0 581 313 45 40 chr3 26849875 26849909 -191187249 - MIR SINE MIR -201 61 29 350 275 79 119 chr3 26850041 26850546 -191186612 + MLT1K LTR MaLR 104 588 0 33529 39 31 2 chr3 26851068 26855232 -191181926 + L1P LINE L1 1 4286 -1860 10167 85 8 21 chr3 26855232 26856631 -191180527 + HERVL-A1 LTR ERVL 4274 5654 0 2999 80 52 5 chr3 26856631 26857055 -191180103 + MLT2A1 LTR ERVL 1 444 0 7159 220 60 28 chr3 26857055 26858219 -191178939 - L1ME LINE L1 -445 5790 4665 1854 167 20 3 chr3 26858219 26858573 -191178585 + MER46B DNA MER2_type 2 236 0 7159 220 60 28 chr3 26858573 26859851 -191177307 - L1ME LINE L1 -1570 4665 3278 5011 251 67 11 chr3 26859869 26861424 -191175734 - L1ME LINE L1 -4718 1678 37 404 235 0 0 chr3 26863570 26863651 -191173507 - MIR3 SINE MIR -46 162 82 1143 256 83 42 chr3 26864383 26864855 -191172303 - LTR16C LTR ERVL 0 491 1 594 269 120 42 chr3 26864879 26865213 -191171945 - MLT1I LTR MaLR -11 398 39 524 342 74 25 chr3 26865608 26865869 -191171289 + L1MC4a LINE L1 5413 5660 -2148 2542 133 24 7 chr3 26865869 26866289 -191170869 + MSTA LTR MaLR 1 427 -1 524 342 74 25 chr3 26866289 26866515 -191170643 + L1MC4a LINE L1 5660 5924 -1884 299 239 114 94 chr3 26866727 26866928 -191170230 + MLT1K LTR MaLR 136 340 -248 255 61 0 0 chr3 26867029 26867062 -191170096 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 330 314 127 31 chr3 26867228 26867457 -191169701 + L1MC4a LINE L1 5751 6001 -1807 622 300 67 73 chr3 26867892 26868249 -191168909 - MLT1I LTR MaLR -1 408 54 21 0 0 0 chr3 26868652 26868673 -191168485 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 26868784 26868807 -191168351 + AT_rich Low_complexity Low_complexity 1 23 0 756 102 0 183 chr3 26869110 26869307 -191167851 - MER82 DNA MER2_type -304 349 189 26 30 0 0 chr3 26869365 26869398 -191167760 + AT_rich Low_complexity Low_complexity 1 33 0 307 227 13 60 chr3 26869459 26869609 -191167549 + L1ME4a LINE L1 5976 6118 -3 2178 97 4 0 chr3 26869988 26870337 -191166821 + AluSg SINE Alu 3 352 0 822 113 0 0 chr3 26870347 26870453 -191166705 + AluSg/x SINE Alu 187 292 -20 269 26 26 0 chr3 26870998 26871036 -191166122 + (CA)n Simple_repeat Simple_repeat 2 40 0 2942 161 40 72 chr3 26871040 26871692 -191165466 - MER82 DNA MER2_type 0 653 23 24 67 0 0 chr3 26871695 26871740 -191165418 + AT_rich Low_complexity Low_complexity 1 45 0 2488 79 0 0 chr3 26871951 26872254 -191164904 + AluY SINE Alu 1 303 -8 1852 149 3 0 chr3 26872330 26872612 -191164546 - AluSx SINE Alu -7 305 23 836 252 5 5 chr3 26873376 26873582 -191163576 + L1ME1 LINE L1 5457 5662 -504 1155 246 30 18 chr3 26875719 26876049 -191161109 + L1ME1 LINE L1 5674 6007 -159 234 65 0 0 chr3 26876067 26876098 -191161060 + MER3 DNA MER1_type 19 49 -160 375 245 13 0 chr3 26876103 26876213 -191160945 + L1ME1 LINE L1 6064 6183 -1 322 217 120 22 chr3 26876538 26876630 -191160528 + L2 LINE L2 3208 3308 -5 1023 276 110 18 chr3 26876904 26877472 -191159686 - L2 LINE L2 -4 3309 2687 345 140 0 0 chr3 26877472 26877522 -191159636 + Alu SINE Alu 1 50 -250 428 233 0 0 chr3 26877522 26877608 -191159550 - AluJ/FLAM SINE Alu -226 86 1 213 344 110 40 chr3 26877691 26877918 -191159240 - L2 LINE L2 -1063 2251 2009 * 870 313 69 30 chr3 26877897 26878396 -191158762 + L2 LINE L2 2791 3306 -7 21 0 0 0 chr3 26879606 26879627 -191157531 + AT_rich Low_complexity Low_complexity 1 21 0 240 306 0 0 chr3 26880369 26880431 -191156727 + (CA)n Simple_repeat Simple_repeat 1 62 0 250 320 70 23 chr3 26881280 26881408 -191155750 + L2 LINE L2 3139 3272 0 507 340 46 46 chr3 26881800 26882059 -191155099 - MLT1K LTR MaLR -325 263 5 488 311 37 37 chr3 26882399 26882563 -191154595 - MER5B DNA MER1_type -14 164 1 1422 208 5 5 chr3 26884067 26884549 -191152609 - L1ME LINE L1 -627 5537 5056 1844 191 41 109 chr3 26884562 26884700 -191152458 + L1ME2 LINE L1 5554 5700 -464 1171 130 19 24 chr3 26884700 26884907 -191152251 + L1PB1 LINE L1 5943 6148 -3 1844 191 41 109 chr3 26884907 26885401 -191151757 + L1ME2 LINE L1 5700 6143 -21 34 84 0 0 chr3 26885543 26885626 -191151532 + AT_rich Low_complexity Low_complexity 1 83 0 318 244 75 85 chr3 26885691 26885998 -191151160 - L1ME4a LINE L1 -206 5915 5612 243 0 0 0 chr3 26886497 26886524 -191150634 + (T)n Simple_repeat Simple_repeat 1 27 0 527 283 69 6 chr3 26886826 26886999 -191150159 + MIR SINE MIR 64 247 -15 724 352 157 33 chr3 26887081 26887531 -191149627 + L2 LINE L2 210 603 -2711 2184 112 0 0 chr3 26887531 26887817 -191149341 - AluSx SINE Alu -26 286 1 724 352 157 33 chr3 26887817 26888933 -191148225 + L2 LINE L2 603 1970 -1344 30 59 0 0 chr3 26889696 26889747 -191147411 + AT_rich Low_complexity Low_complexity 1 51 0 243 0 0 0 chr3 26891803 26891830 -191145328 + (TG)n Simple_repeat Simple_repeat 2 28 0 246 342 46 66 chr3 26892531 26892683 -191144475 - L3b LINE CR1 -38 1545 1397 237 289 79 44 chr3 26892705 26892819 -191144339 + MIR SINE MIR 71 188 -74 507 314 14 45 chr3 26894099 26894319 -191142839 - MIR SINE MIR -14 248 36 268 43 21 21 chr3 26894947 26894994 -191142164 + (CA)n Simple_repeat Simple_repeat 1 47 0 210 37 0 0 chr3 26896137 26896164 -191140994 + (GA)n Simple_repeat Simple_repeat 2 28 0 304 339 83 39 chr3 26896556 26896736 -191140422 + MER5A DNA MER1_type 2 189 0 251 284 140 26 chr3 26898983 26899212 -191137946 + L1ME LINE L1 5563 5817 -304 751 271 60 5 chr3 26899826 26900044 -191137114 + MIR SINE MIR 33 262 0 189 390 50 25 chr3 26901993 26902152 -191135006 + L3b LINE CR1 1420 1582 -1 943 189 9 47 chr3 26903461 26903673 -191133485 - MER3 DNA MER1_type -1 208 5 238 333 126 49 chr3 26904084 26904432 -191132726 + L2 LINE L2 2328 2702 -612 1260 228 96 3 chr3 26904720 26905032 -191132126 + MER58B DNA MER1_type 1 341 0 284 310 7 71 chr3 26905136 26905291 -191131867 + L2 LINE L2 3160 3304 -9 240 287 0 32 chr3 26905361 26905455 -191131703 + (CATATA)n Simple_repeat Simple_repeat 6 96 0 246 128 0 0 chr3 26906557 26906596 -191130562 + (A)n Simple_repeat Simple_repeat 1 39 0 273 264 63 25 chr3 26906855 26907014 -191130144 - L1ME LINE L1 -614 5507 5343 596 312 74 28 chr3 26907026 26907241 -191129917 + MIR SINE MIR 23 247 -15 2423 15 0 0 chr3 26909765 26910037 -191127121 - L1P1 LINE L1 -505 5650 5379 405 49 98 0 chr3 26910037 26910091 -191127067 + L1PA4 LINE L1 6088 6154 -1 1102 281 71 20 chr3 26910352 26910801 -191126357 - MLT1L LTR MaLR -4 611 140 478 266 70 0 chr3 26911015 26911143 -191126015 + L2 LINE L2 3177 3313 0 1581 195 26 35 chr3 26911915 26912258 -191124900 + MLT1A1 LTR MaLR 26 365 0 1257 247 76 8 chr3 26912569 26912950 -191124208 + LTR16C LTR ERVL 85 491 0 420 82 0 0 chr3 26913121 26913182 -191123976 + (CA)n Simple_repeat Simple_repeat 2 62 0 1134 286 58 39 chr3 26915105 26915692 -191121466 + L1MCc LINE L1 816 1413 -5010 * 6585 220 118 69 chr3 26915689 26916132 -191121026 + L1MD3 LINE L1 4763 5183 -2812 3159 104 11 7 chr3 26916132 26916582 -191120576 + MLT2A2 LTR ERVL 1 452 -1 6585 220 118 69 chr3 26916582 26916824 -191120334 + L1MD3 LINE L1 5183 5412 -2583 204 40 0 0 chr3 26916824 26916849 -191120309 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 6585 220 118 69 chr3 26916849 26918524 -191118634 + L1MD3 LINE L1 5412 7003 -992 512 259 12 8 chr3 26918524 26918652 -191118506 + MLT1F1 LTR MaLR 1 129 -445 6585 220 118 69 chr3 26918652 26919037 -191118121 + L1MD3 LINE L1 7003 7368 -627 2477 121 22 0 chr3 26919037 26919393 -191117765 - THE1B LTR MaLR 0 364 1 6585 220 118 69 chr3 26919393 26919594 -191117564 + L1MD3 LINE L1 7368 7995 0 538 310 73 39 chr3 26919781 26920013 -191117145 - MIR SINE MIR 0 262 23 248 335 138 5 chr3 26920013 26920216 -191116942 - MIR SINE MIR 0 262 29 491 305 60 92 chr3 26921218 26921467 -191115691 - L2 LINE L2 0 3272 3032 738 213 113 0 chr3 26922235 26922395 -191114763 + MER45A DNA AcHobo 1 178 0 1521 195 128 19 chr3 26922633 26923054 -191114104 - MLT1C LTR MaLR 0 467 1 363 367 14 7 chr3 26923332 26923471 -191113687 - MIR3 SINE MIR -23 185 46 495 272 16 86 chr3 26923625 26923868 -191113290 - MER102a DNA MER1_type -16 314 89 309 305 83 31 chr3 26925241 26925409 -191111749 + MIR SINE MIR 15 191 -61 233 162 0 0 chr3 26926418 26926455 -191110703 + L2 LINE L2 3255 3291 -22 47 19 0 0 chr3 26926982 26927036 -191110122 + AT_rich Low_complexity Low_complexity 1 54 0 196 269 19 0 chr3 26928193 26928245 -191108913 - L2 LINE L2 0 3313 3261 981 119 0 0 chr3 26930206 26930357 -191106801 + (TA)n Simple_repeat Simple_repeat 2 152 0 1839 132 25 14 chr3 26930357 26930638 -191106520 - AluJb SINE Alu -28 284 1 1218 299 31 43 chr3 26932339 26932921 -191104237 - L1MC3 LINE L1 -1263 6522 5948 1530 207 31 0 chr3 26933333 26933657 -191103501 + L1 LINE L1 4910 5243 -903 387 208 35 34 chr3 26933867 26934226 -191102932 + (TATAA)n Simple_repeat Simple_repeat 1 359 0 280 232 96 0 chr3 26934236 26934361 -191102797 + (TATAG)n Simple_repeat Simple_repeat 2 138 0 415 146 20 26 chr3 26934368 26934519 -191102639 + (TATAA)n Simple_repeat Simple_repeat 5 154 0 1911 149 48 25 chr3 26934714 26935070 -191102088 - THE1B LTR MaLR 0 364 1 10952 106 25 0 chr3 26935070 26936612 -191100546 - THE1B-int LTR MaLR 0 1580 1 1893 128 110 27 chr3 26936612 26936948 -191100210 - THE1B LTR MaLR 0 364 1 1945 132 31 0 chr3 26939461 26939585 -191097573 + AluSx SINE Alu 1 120 -192 192 40 0 0 chr3 26939585 26939610 -191097548 + (TA)n Simple_repeat Simple_repeat 1 25 0 1945 132 31 0 chr3 26939610 26939773 -191097385 + AluSx SINE Alu 120 297 -15 193 286 0 0 chr3 26940167 26940216 -191096942 + L2 LINE L2 3265 3313 0 452 256 0 62 chr3 26941087 26941216 -191095942 + FLAM_A SINE Alu 3 123 -10 23 78 0 0 chr3 26941573 26941624 -191095534 + AT_rich Low_complexity Low_complexity 1 51 0 1011 184 190 53 chr3 26942132 26942453 -191094705 - MLT1A1 LTR MaLR 0 365 1 246 291 39 29 chr3 26943330 26943433 -191093725 - MIR SINE MIR -60 148 45 354 294 21 21 chr3 26943884 26944027 -191093131 + MARNA DNA Mariner 88 230 -356 589 197 24 31 chr3 26944073 26944200 -191092958 - LTR67 LTR ERVL 0 557 432 231 271 86 48 chr3 26944596 26944762 -191092396 + MLT1J1 LTR MaLR 34 249 -262 230 294 166 43 chr3 26944765 26944928 -191092230 + MLT1J2 LTR MaLR 254 436 -14 766 271 95 21 chr3 26946729 26947086 -191090072 - MLT1H LTR MaLR -153 402 43 2114 130 0 0 chr3 26947231 26947532 -191089626 - AluSx SINE Alu -11 301 1 308 304 0 0 chr3 26947604 26947683 -191089475 + L2 LINE L2 3192 3270 -2 543 245 155 0 chr3 26947932 26948087 -191089071 + MER5A DNA MER1_type 9 187 -2 25 51 0 0 chr3 26948728 26948767 -191088391 + AT_rich Low_complexity Low_complexity 1 39 0 693 186 137 0 chr3 26949295 26949456 -191087702 - MER5A DNA MER1_type 0 189 7 7308 168 18 10 chr3 26949496 26951947 -191085211 + L1PB1 LINE L1 3688 6151 0 428 344 87 5 chr3 26952057 26952252 -191084906 + MIR SINE MIR 52 262 0 278 300 0 29 chr3 26952394 26952464 -191084694 - L2 LINE L2 0 3272 3205 1653 237 47 81 chr3 26952494 26952890 -191084268 - MLT1F LTR MaLR -8 534 161 2300 93 3 3 chr3 26952890 26953190 -191083968 + AluSx SINE Alu 1 300 -12 1653 237 47 81 chr3 26953190 26953346 -191083812 - MLT1F LTR MaLR -381 161 1 508 217 83 0 chr3 26953834 26953954 -191083204 - MER94 DNA DNA 0 134 5 180 0 0 0 chr3 26954531 26954551 -191082607 + (A)n Simple_repeat Simple_repeat 1 20 0 1905 172 20 24 chr3 26955774 26956265 -191080893 - L1M4 LINE L1 -526 5658 5171 238 315 97 24 chr3 26956445 26956610 -191080548 - MIR SINE MIR -38 224 48 22 35 0 0 chr3 26956998 26957027 -191080131 + AT_rich Low_complexity Low_complexity 1 29 0 22 70 0 0 chr3 26957040 26957083 -191080075 + AT_rich Low_complexity Low_complexity 1 43 0 184 390 0 0 chr3 26957861 26957956 -191079202 + MIR SINE MIR 37 131 -77 * 347 298 107 16 chr3 26957887 26958063 -191079095 + L2 LINE L2 3083 3308 -5 1406 179 75 48 chr3 26959254 26959589 -191077569 + MER2 DNA MER2_type 1 344 0 302 216 57 45 chr3 26959856 26959944 -191077214 - MLT1J1 LTR MaLR -13 433 345 1815 268 105 27 chr3 26960001 26960084 -191077074 + L1ME3A LINE L1 4961 5036 -1134 748 218 93 10 chr3 26960084 26960277 -191076881 + MER3 DNA MER1_type 1 209 0 1815 268 105 27 chr3 26960277 26960665 -191076493 + L1ME3A LINE L1 5036 5392 -778 198 0 0 0 chr3 26960665 26960687 -191076471 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1815 268 105 27 chr3 26960687 26961330 -191075828 + L1ME3A LINE L1 5392 6161 -9 252 212 15 61 chr3 26961573 26961639 -191075519 - L2 LINE L2 0 3313 3251 213 247 93 31 chr3 26962073 26962170 -191074988 + L2 LINE L2 3150 3252 -20 329 274 101 94 chr3 26963602 26963909 -191073249 - MLT1J LTR MaLR -101 410 102 239 312 0 13 chr3 26963965 26964042 -191073116 - MLT1L LTR MaLR -538 77 2 4288 185 32 15 chr3 26964589 26965603 -191071555 + L1MB3 LINE L1 5149 6181 -2 4830 90 1 10 chr3 27067884 27068586 -190968572 - L1P LINE L1 -893 5253 4558 3641 78 4 0 chr3 27068586 27069066 -190968092 + L1PA7 LINE L1 5655 6143 -11 446 271 49 0 chr3 27070453 27070597 -190966561 - MIR SINE MIR 0 262 112 184 42 0 0 chr3 27070757 27070781 -190966377 + MIR SINE MIR 116 139 -123 328 227 0 0 chr3 27071044 27071119 -190966039 + MER116 DNA Mariner 1 75 -5 441 0 0 0 chr3 27072713 27072762 -190964396 + (CA)n Simple_repeat Simple_repeat 2 50 0 1101 234 78 57 chr3 27073677 27074010 -190963148 - LTR16C LTR ERVL 0 491 152 919 343 52 41 chr3 27074315 27075029 -190962129 - HERV16 LTR ERVL -441 5323 4602 635 342 29 26 chr3 27075094 27075404 -190961754 - HERV16 LTR ERVL -1225 4429 4119 376 312 28 57 chr3 27075542 27075824 -190961334 - HERV16 LTR ERVL -1698 3956 3683 777 209 48 147 chr3 27075875 27076291 -190960867 + MLT2D LTR ERVL 90 464 0 957 324 40 53 chr3 27076336 27077042 -190960116 - HERV16 LTR ERVL -2850 2146 1492 1106 184 10 0 chr3 27077452 27077659 -190959499 - MER3 DNA MER1_type 0 209 1 266 349 30 48 chr3 27077748 27077914 -190959244 - MIR SINE MIR -72 190 28 1832 240 42 38 chr3 27078103 27078905 -190958253 + L1MEc LINE L1 1200 2148 -4415 421 305 41 50 chr3 27078898 27079334 -190957824 + L1M4 LINE L1 1731 2162 -4234 * 458 112 90 34 chr3 27079323 27079412 -190957746 + L1M4 LINE L1 2383 2476 -3739 * 1080 259 37 0 chr3 27079405 27079788 -190957370 + L1M4 LINE L1 2867 3263 -2952 * 13773 186 36 22 chr3 27079783 27084032 -190953126 + L1MA3 LINE L1 12 4201 -3523 1646 179 0 74 chr3 27084032 27084177 -190952981 + AluJo SINE Alu 1 155 -157 2228 62 14 3 chr3 27084177 27084466 -190952692 + AluY SINE Alu 1 292 -19 1646 179 0 74 chr3 27084466 27084656 -190952502 + AluJo SINE Alu 155 311 -1 13773 186 36 22 chr3 27084656 27086205 -190950953 + L1MA3 LINE L1 4201 5727 -1997 2726 7 0 0 chr3 27086205 27086498 -190950660 - AluYa5 SINE Alu -13 298 6 13773 186 36 22 chr3 27086498 27087947 -190949211 + L1MA3 LINE L1 5727 7724 0 24 0 0 0 chr3 27087954 27087978 -190949180 + AT_rich Low_complexity Low_complexity 1 24 0 24 67 0 0 chr3 27088158 27088203 -190948955 + AT_rich Low_complexity Low_complexity 1 45 0 16365 94 18 3 chr3 27088410 27091047 -190946111 - L1P3 LINE L1 -534 5620 2946 2993 225 54 14 chr3 27091053 27091474 -190945684 + L1M4 LINE L1 4426 4829 -1386 252 59 0 0 chr3 27091474 27091508 -190945650 + (TG)n Simple_repeat Simple_repeat 1 34 0 2993 225 54 14 chr3 27091508 27091945 -190945213 + L1M4 LINE L1 4829 5318 -897 265 143 95 16 chr3 27091948 27092011 -190945147 + L1M4 LINE L1 5504 5571 -662 751 222 26 32 chr3 27092610 27092799 -190944359 - MER5A DNA MER1_type 0 189 2 2151 119 0 3 chr3 27093284 27093577 -190943581 - AluSc SINE Alu -17 292 1 235 0 0 0 chr3 27093826 27093853 -190943305 - MLT2A1 LTR ERVL 0 444 418 * 2058 85 42 16 chr3 27093851 27094158 -190943000 - MLT2A1 LTR ERVL -129 315 1 331 411 15 0 chr3 27094169 27094366 -190942792 - MER93a-int LTR ERV1 -1085 6452 6253 2550 234 66 52 chr3 27094845 27095873 -190941285 - MER93a-int LTR ERV1 -1480 3456 2866 1606 138 14 3 chr3 27095873 27096156 -190941002 + L1MA1 LINE L1 6017 6302 0 2550 234 66 52 chr3 27096156 27096560 -190940598 - MER93a-int LTR ERV1 -2070 2866 2469 2221 83 0 23 chr3 27096644 27096944 -190940214 + AluY SINE Alu 1 293 -18 446 229 54 75 chr3 27096960 27097315 -190939843 - MER93a-int LTR ERV1 -2549 2387 2106 1264 182 71 43 chr3 27097323 27097603 -190939555 + Tigger2a DNA MER2_type 5 292 -142 2357 50 4 0 chr3 27097709 27097989 -190939169 + AluY SINE Alu 1 320 0 352 0 0 0 chr3 27097989 27098028 -190939130 + (TAAA)n Simple_repeat Simple_repeat 3 160 0 685 214 21 28 chr3 27098030 27098175 -190938983 + Tigger2a DNA MER2_type 301 444 0 385 247 147 0 chr3 27098189 27098339 -190938819 - MER93a-int LTR ERV1 -2855 2081 1910 367 186 116 0 chr3 27098433 27098519 -190938639 - MER34 LTR ERV1 -446 96 1 1364 200 76 56 chr3 27098712 27099381 -190937777 - MER93a-int LTR ERV1 -2846 3017 882 278 288 61 0 chr3 27099704 27099770 -190937388 - MER93a-int LTR ERV1 -7238 299 230 788 257 133 22 chr3 27099965 27100327 -190936831 - MER93a LTR ERV1 0 402 1 248 172 0 35 chr3 27101401 27101459 -190935699 - MLT2C1 LTR ERVL 0 520 465 228 163 0 0 chr3 27101516 27101559 -190935599 + (TA)n Simple_repeat Simple_repeat 2 44 0 261 98 0 0 chr3 27101562 27101603 -190935555 + (GA)n Simple_repeat Simple_repeat 2 42 0 1466 167 22 51 chr3 27101626 27101937 -190935221 - MLT2C1 LTR ERVL -95 302 1 2194 252 68 19 chr3 27103771 27104036 -190933122 + MLT1E1 LTR MaLR 1 252 -402 2535 76 51 0 chr3 27104036 27104392 -190932766 + L1PA7 LINE L1 5770 6143 -11 2194 252 68 19 chr3 27104392 27104745 -190932413 + MLT1E1 LTR MaLR 252 649 -5 342 0 0 0 chr3 27105456 27105494 -190931664 + (TG)n Simple_repeat Simple_repeat 2 39 0 266 357 9 27 chr3 27106423 27106535 -190930623 + L2 LINE L2 3197 3306 -7 1319 241 72 38 chr3 27106714 27107287 -190929871 + L1M4 LINE L1 881 1472 -5070 25 51 0 0 chr3 27107538 27107577 -190929581 + AT_rich Low_complexity Low_complexity 1 39 0 1006 308 23 34 chr3 27109530 27109916 -190927242 - LTR16A LTR ERVL -13 437 56 398 360 31 22 chr3 27110579 27110804 -190926354 - LTR16C LTR ERVL -102 389 163 696 293 15 10 chr3 27112023 27112228 -190924930 - MIR SINE MIR -55 207 2 191 229 48 96 chr3 27114061 27114144 -190923014 - L2 LINE L2 -5 3267 3189 479 133 4 0 chr3 27114398 27114479 -190922679 + MSTB1 LTR MaLR 257 409 -23 329 250 53 0 chr3 27115225 27115301 -190921857 + AluSg SINE Alu 3 82 -218 1194 173 119 34 chr3 27115425 27115720 -190921438 + THE1C LTR MaLR 56 375 0 6522 144 14 46 chr3 27115722 27116886 -190920272 + THE1C-int LTR MaLR 3 1128 -452 1098 287 117 29 chr3 27116985 27117431 -190919727 - MLT1G1 LTR MaLR -110 485 1 22 70 0 0 chr3 27117725 27117768 -190919390 + AT_rich Low_complexity Low_complexity 1 43 0 3104 193 39 29 chr3 27117971 27119356 -190917802 + L1MC1 LINE L1 4432 5830 -514 1331 161 22 0 chr3 27119356 27119580 -190917578 + MSTB LTR MaLR 1 229 -197 1679 189 151 17 chr3 27119602 27119974 -190917184 + MSTB LTR MaLR 5 426 0 1095 158 25 49 chr3 27119974 27120175 -190916983 + MSTB LTR MaLR 231 426 0 8677 191 17 21 chr3 27120175 27121816 -190915342 + MSTB-int LTR MaLR 1 1634 -17 2341 172 16 37 chr3 27121835 27122270 -190914888 + MSTB LTR MaLR 1 426 0 2644 165 18 12 chr3 27122270 27122773 -190914385 + L1MC1 LINE L1 5826 6331 -2 237 83 0 0 chr3 27122776 27122812 -190914346 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 22 35 0 0 chr3 27123526 27123555 -190913603 + AT_rich Low_complexity Low_complexity 1 29 0 180 233 116 70 chr3 27124352 27124438 -190912720 - MIR SINE MIR -112 150 61 1008 182 11 16 chr3 27124471 27124658 -190912500 - MER5A DNA MER1_type -3 186 1 379 149 14 27 chr3 27125314 27125388 -190911770 - L1PA10 LINE L1 -3 6165 6093 514 307 36 12 chr3 27125402 27125568 -190911590 - MIR SINE MIR -82 180 11 287 48 0 24 chr3 27125798 27125840 -190911318 + (CAA)n Simple_repeat Simple_repeat 2 42 0 262 333 62 56 chr3 27126402 27126564 -190910594 - MIR SINE MIR -54 208 46 9392 181 79 65 chr3 27126921 27128403 -190908755 + L1MCa LINE L1 6 1466 -4960 189 0 0 0 chr3 27128403 27128424 -190908734 + (TG)n Simple_repeat Simple_repeat 2 22 0 4275 137 14 3 chr3 27128425 27129131 -190908027 - L1MA3 LINE L1 -15 6290 5577 9392 181 79 65 chr3 27129131 27129548 -190907610 + L1MCa LINE L1 1466 1876 -4550 1756 211 79 107 chr3 27129548 27130396 -190906762 + LTR1B LTR ERV1 1 824 -2 9392 181 79 65 chr3 27130396 27130996 -190906162 + L1MCa LINE L1 1876 2557 -3869 1861 179 0 3 chr3 27130996 27131303 -190905855 + AluSx SINE Alu 1 306 -6 9392 181 79 65 chr3 27131303 27131786 -190905372 + L1MCa LINE L1 2557 3032 -3394 297 159 15 0 chr3 27131788 27131855 -190905303 + L1MC1 LINE L1 2507 2566 -3860 2523 251 38 6 chr3 27133442 27134283 -190902875 + L1MC1 LINE L1 3118 3985 -2441 873 269 52 3 chr3 27134273 27134597 -190902561 + L1MC1 LINE L1 4613 4952 -1474 * 3713 170 55 3 chr3 27134709 27135419 -190901739 + L1MC1 LINE L1 5867 6613 0 1526 203 39 25 chr3 27135420 27135779 -190901379 + L1MB8 LINE L1 5808 6171 -7 243 109 16 47 chr3 27136667 27136731 -190900427 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 436 272 79 45 chr3 27137058 27137372 -190899786 - MLT1H LTR MaLR -110 299 2 202 258 91 0 chr3 27137400 27137466 -190899692 + MIR SINE MIR 123 194 -68 240 236 14 0 chr3 27137646 27137718 -190899440 + L1ME3A LINE L1 6093 6165 -5 792 297 80 21 chr3 27138423 27138901 -190898257 + L1ME3A LINE L1 3498 4003 -2143 7812 16 1 0 chr3 27139076 27139975 -190897183 - L1PA3 LINE L1 -2 6153 5254 1600 170 3 14 chr3 27140155 27140437 -190896721 - L1PA16 LINE L1 -105 6061 5783 824 275 64 42 chr3 27140467 27141088 -190896070 + L1ME3A LINE L1 5148 5795 -375 2200 125 31 22 chr3 27141088 27141447 -190895711 + THE1B LTR MaLR 3 364 0 824 275 64 42 chr3 27141447 27141609 -190895549 + L1ME3A LINE L1 5795 5952 -218 32 26 0 0 chr3 27141783 27141822 -190895336 + AT_rich Low_complexity Low_complexity 1 39 0 1138 150 33 0 chr3 27142157 27142337 -190894821 + THE1B LTR MaLR 1 186 -178 6927 99 6 13 chr3 27142363 27144181 -190892977 - L1PA7 LINE L1 -2 6152 4345 32978 32 20 1 chr3 27144181 27150157 -190887001 - L1PA2 LINE L1 -7 6463 316 2295 98 9 0 chr3 27150155 27150491 -190886667 - L1PA7 LINE L1 -1785 4361 4023 * 1177 130 5 10 chr3 27150489 27150681 -190886477 - L1PA2 LINE L1 -6265 196 6 * 867 161 68 6 chr3 27150697 27150858 -190886300 + THE1B LTR MaLR 194 364 0 333 239 43 0 chr3 27150979 27151071 -190886087 - MIR SINE MIR -46 216 121 1670 284 74 15 chr3 27151422 27152624 -190884534 + L1ME3A LINE L1 4885 6162 -8 403 206 31 21 chr3 27152747 27152844 -190884314 + MER69 DNA AcHobo 4 101 -2425 4601 202 70 112 chr3 27153015 27154847 -190882311 - MER52A LTR ERV1 0 1755 1 2035 106 0 56 chr3 27154997 27155300 -190881858 + AluSx SINE Alu 1 286 -26 447 241 124 44 chr3 27156341 27156478 -190880680 + MER5A DNA MER1_type 2 149 -40 410 255 158 23 chr3 27157878 27158137 -190879021 - L1ME4a LINE L1 -9 6112 5819 1465 180 25 3 chr3 27158257 27158574 -190878584 - MER33 DNA MER1_type 0 324 1 527 225 24 6 chr3 27159055 27159224 -190877934 + Charlie2 DNA MER1_type 2509 2680 -182 40 21 0 0 chr3 27159260 27159307 -190877851 + AT_rich Low_complexity Low_complexity 1 47 0 321 235 157 0 chr3 27159412 27159514 -190877644 + MIR SINE MIR 89 206 -56 2246 115 7 0 chr3 27159588 27159892 -190877266 - AluSx SINE Alu -6 306 1 564 309 9 33 chr3 27159898 27160108 -190877050 - L2 LINE L2 -4 3309 3105 718 334 38 51 chr3 27160209 27160638 -190876520 + L2 LINE L2 2792 3218 -95 198 206 59 15 chr3 27160715 27160783 -190876375 - MIR SINE MIR -45 217 147 675 301 85 45 chr3 27160786 27161234 -190875924 - MLT1H LTR MaLR -5 544 79 218 313 0 5 chr3 27161273 27161344 -190875814 - MIR3 SINE MIR -36 172 102 27 29 0 0 chr3 27162411 27162445 -190874713 + AT_rich Low_complexity Low_complexity 1 34 0 191 287 56 46 chr3 27163467 27163575 -190873583 + L2 LINE L2 2869 2977 -295 601 289 34 21 chr3 27163629 27164018 -190873140 + L1MEc LINE L1 1445 1752 -4463 301 255 118 88 chr3 27164083 27164491 -190872667 + L1MCc LINE L1 36 455 -5968 9894 171 21 31 chr3 27164494 27167743 -190869415 + L1P3 LINE L1 12 3275 -3186 2363 216 43 16 chr3 27168094 27168807 -190868351 - L1MB7 LINE L1 -242 5942 5213 659 243 5 33 chr3 27169638 27169848 -190867310 + MER3 DNA MER1_type 1 204 -5 2229 210 68 38 chr3 27169999 27170633 -190866525 - L1MB8 LINE L1 -38 6140 5488 6475 82 14 1 chr3 27170958 27172721 -190864437 + L1PA8 LINE L1 4399 6172 0 314 335 7 26 chr3 27172990 27173145 -190864013 + L1MCc LINE L1 819 970 -5453 1873 280 64 10 chr3 27173149 27173949 -190863209 + L1ME3A LINE L1 5317 6159 -11 29 28 0 0 chr3 27173950 27173986 -190863172 + AT_rich Low_complexity Low_complexity 1 36 0 1574 85 0 9 chr3 27174573 27174797 -190862361 + L1PA13 LINE L1 5941 6162 -1 198 214 0 0 chr3 27174909 27174951 -190862207 - MIR SINE MIR -109 153 112 828 259 173 30 chr3 27175013 27175265 -190861893 - LTR16C LTR ERVL -3 488 165 1810 121 96 39 chr3 27175265 27175620 -190861538 - THE1C LTR MaLR 0 375 1 828 259 173 30 chr3 27175620 27175737 -190861421 - LTR16C LTR ERVL -326 165 66 381 319 61 44 chr3 27175891 27176251 -190860907 + MLT1K LTR MaLR 211 576 -12 591 261 36 52 chr3 27176259 27176589 -190860569 - HsTC2 DNA Tc2 -11 1887 1563 1011 231 94 44 chr3 27176625 27177677 -190859481 - L1MB5 LINE L1 -201 5973 4868 1976 190 33 32 chr3 27177678 27178228 -190858930 - MLT2A2 LTR ERVL 0 554 1 2394 153 26 16 chr3 27178232 27178824 -190858334 + MER4E LTR ERV1 1 766 0 326 297 34 34 chr3 27178827 27178945 -190858213 - L1MB5 LINE L1 -1285 4861 4744 1750 207 127 50 chr3 27179420 27180081 -190857077 + MER50 LTR ERV1 1 712 -22 2559 11 0 0 chr3 27180099 27180378 -190856780 - AluY SINE Alu -2 309 31 26 98 0 0 chr3 27180415 27180497 -190856661 + AT_rich Low_complexity Low_complexity 1 82 0 194 308 0 19 chr3 27180709 27180761 -190856397 - MIR SINE MIR -138 70 20 22 56 0 0 chr3 27180876 27180912 -190856246 + AT_rich Low_complexity Low_complexity 1 36 0 28 0 0 0 chr3 27181042 27181070 -190856088 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 27181461 27181482 -190855676 + AT_rich Low_complexity Low_complexity 1 21 0 204 171 24 0 chr3 27181575 27181616 -190855542 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 224 336 103 9 chr3 27183176 27183292 -190853866 + MIR3 SINE MIR 81 207 -1 2437 73 0 0 chr3 27183689 27183989 -190853169 - AluY SINE Alu -11 300 1 296 109 0 16 chr3 27184761 27184825 -190852333 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 185 378 12 24 chr3 27185140 27185222 -190851936 - MIR SINE MIR -85 123 43 2253 121 0 0 chr3 27185338 27185643 -190851515 - AluSg SINE Alu -5 305 1 2307 77 7 0 chr3 27185788 27186075 -190851083 - AluY SINE Alu -14 297 9 1616 194 21 7 chr3 27186442 27186726 -190850432 + AluJb SINE Alu 2 289 -23 180 0 0 0 chr3 27186732 27186752 -190850406 + (TA)n Simple_repeat Simple_repeat 1 20 0 373 200 53 0 chr3 27187387 27187462 -190849696 - L2 LINE L2 -9 3304 3226 272 321 0 0 chr3 27187464 27187548 -190849610 - MIR SINE MIR -39 223 140 191 323 15 0 chr3 27187878 27187943 -190849215 - L2 LINE L2 -584 2730 2665 1220 207 37 52 chr3 27187947 27188218 -190848940 + AluJo SINE Alu 1 267 -45 244 321 46 0 chr3 27189476 27189607 -190847551 - MIR SINE MIR 0 262 126 248 259 0 0 chr3 27189788 27189846 -190847312 + MLT1J1 LTR MaLR 266 323 -123 234 285 141 62 chr3 27190558 27190814 -190846344 + MLT1J LTR MaLR 236 511 0 414 350 65 31 chr3 27191247 27191541 -190845617 - L2 LINE L2 -571 2743 2440 397 268 142 16 chr3 27191772 27191962 -190845196 - LTR16B LTR ERVL -65 399 186 307 296 20 0 chr3 27192159 27192257 -190844901 + MLT1I LTR MaLR 41 140 -269 424 240 130 7 chr3 27192327 27192473 -190844685 + MLT1I LTR MaLR 245 408 -1 226 265 0 29 chr3 27192938 27193006 -190844152 - MIR SINE MIR -98 164 99 535 273 83 30 chr3 27193583 27194027 -190843131 + MLT1G1 LTR MaLR 7 571 -24 1562 74 0 5 chr3 27194171 27194386 -190842772 - L1PA6 LINE L1 0 6154 5941 222 182 0 0 chr3 27194986 27195019 -190842139 + L2 LINE L2 3213 3245 -27 199 47 0 93 chr3 27199636 27199679 -190837479 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 31 44 0 0 chr3 27200366 27200411 -190836747 + AT_rich Low_complexity Low_complexity 1 45 0 26 0 0 0 chr3 27200500 27200526 -190836632 + AT_rich Low_complexity Low_complexity 1 26 0 194 91 30 0 chr3 27200722 27200755 -190836403 + (CA)n Simple_repeat Simple_repeat 2 35 0 2333 107 0 0 chr3 27201304 27201613 -190835545 + AluSx SINE Alu 2 310 -2 2252 93 3 7 chr3 27202271 27202581 -190834577 - AluSg1 SINE Alu 0 309 1 333 321 111 59 chr3 27203755 27204312 -190832846 + L2 LINE L2 2317 2902 -412 24 0 0 0 chr3 27205613 27205637 -190831521 + AT_rich Low_complexity Low_complexity 1 24 0 288 303 45 6 chr3 27206382 27206560 -190830598 - L1MC/D LINE L1 -2333 5475 5291 236 26 26 0 chr3 27206764 27206802 -190830356 - L1MA3 LINE L1 0 6305 6267 651 302 132 60 chr3 27207015 27208101 -190829057 - L1MC/D LINE L1 -1306 4840 3677 251 282 34 27 chr3 27209261 27209276 -190827882 - L1MA10 LINE L1 0 6334 6320 748 224 127 17 chr3 27209276 27209513 -190827645 - L1ME1 LINE L1 -2 6164 5902 4059 181 15 15 chr3 27209518 27210242 -190826916 + MER44D DNA MER2_type 10 605 0 284 248 10 10 chr3 27210242 27210343 -190826815 - L1ME1 LINE L1 -263 5903 5803 1004 211 98 90 chr3 27211031 27211160 -190825998 - MER114 LTR ERV 0 648 521 1710 137 59 42 chr3 27211160 27211466 -190825692 + AluSx SINE Alu 1 311 -1 1004 211 98 90 chr3 27211466 27211979 -190825179 - MER114 LTR ERV -127 521 1 21 0 0 0 chr3 27212147 27212168 -190824990 + AT_rich Low_complexity Low_complexity 1 21 0 39 38 0 0 chr3 27212203 27212256 -190824902 + AT_rich Low_complexity Low_complexity 1 53 0 28 0 0 0 chr3 27212491 27212519 -190824639 + AT_rich Low_complexity Low_complexity 1 28 0 2584 118 47 31 chr3 27212579 27213004 -190824154 + Tigger2a DNA MER2_type 1 432 -2 493 347 47 5 chr3 27213298 27213491 -190823667 - MIR SINE MIR -4 258 58 601 214 78 5 chr3 27213911 27214111 -190823047 + L1MA10 LINE L1 5964 6331 -3 265 73 455 0 chr3 27214160 27214215 -190822943 + MADE1 DNA Mariner 1 80 0 232 349 48 24 chr3 27215368 27215494 -190821664 + L2 LINE L2 3185 3313 0 222 208 56 83 chr3 27216006 27216078 -190821080 - MIR SINE MIR -71 191 122 1229 187 89 20 chr3 27216603 27216796 -190820362 - L1MD2 LINE L1 -2 6357 6179 198 91 0 0 chr3 27216796 27216829 -190820329 + (TG)n Simple_repeat Simple_repeat 2 34 0 1229 187 89 20 chr3 27216829 27216943 -190820215 - L1MD2 LINE L1 -180 6179 6074 2021 117 13 0 chr3 27216943 27217115 -190820043 - AluSq SINE Alu -11 302 123 189 0 0 0 chr3 27217115 27217136 -190820022 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 2021 117 13 0 chr3 27217136 27217261 -190819897 - AluSq SINE Alu -190 123 1 1229 187 89 20 chr3 27217261 27217434 -190819724 - L1MD2 LINE L1 -285 6074 5795 2324 60 40 0 chr3 27218182 27218480 -190818678 - AluY SINE Alu -1 310 1 226 283 0 0 chr3 27219220 27219273 -190817885 + (CA)n Simple_repeat Simple_repeat 2 54 0 323 315 0 0 chr3 27219519 27219608 -190817550 - L1MC4 LINE L1 -1340 6702 6614 314 296 23 0 chr3 27219618 27219706 -190817452 - L1MC4 LINE L1 -1339 6703 6614 207 0 0 0 chr3 27219724 27219747 -190817411 + (TA)n Simple_repeat Simple_repeat 2 24 0 2090 66 42 11 chr3 27219747 27220034 -190817124 - AluY SINE Alu -15 296 1 253 280 105 35 chr3 27221192 27221335 -190815823 + L2 LINE L2 3129 3281 -32 598 296 75 26 chr3 27221507 27221733 -190815425 - MIR SINE MIR -12 250 14 425 314 8 8 chr3 27221984 27222102 -190815056 + MER5B DNA MER1_type 3 120 -58 312 170 19 0 chr3 27222310 27222363 -190814795 - L2 LINE L2 -9 3263 3210 23 33 0 0 chr3 27222410 27222440 -190814718 + AT_rich Low_complexity Low_complexity 1 30 0 200 184 0 0 chr3 27222553 27222591 -190814567 + (CA)n Simple_repeat Simple_repeat 1 38 0 2399 28 42 0 chr3 27224155 27224443 -190812715 - AluY SINE Alu -11 300 1 3200 216 19 6 chr3 27225694 27226329 -190810829 + MER82 DNA MER2_type 1 643 -10 23 54 0 0 chr3 27226481 27226518 -190810640 + AT_rich Low_complexity Low_complexity 1 37 0 25 51 0 0 chr3 27227109 27227148 -190810010 + AT_rich Low_complexity Low_complexity 1 39 0 258 56 0 0 chr3 27229612 27229648 -190807510 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 236 140 0 20 chr3 27230186 27230236 -190806922 + LTR33A LTR ERVL 4 52 -471 655 274 136 37 chr3 27230249 27230625 -190806533 + L1M4 LINE L1 3074 3486 -2660 512 194 0 10 chr3 27231051 27231161 -190805997 + MLT1H LTR MaLR 18 137 -272 2347 73 0 10 chr3 27231181 27231495 -190805663 + AluY SINE Alu 1 311 0 870 205 139 93 chr3 27231511 27232008 -190805150 - MER114 LTR ERV -128 520 1 21 0 0 0 chr3 27232176 27232197 -190804961 + AT_rich Low_complexity Low_complexity 1 21 0 39 38 0 0 chr3 27232232 27232285 -190804873 + AT_rich Low_complexity Low_complexity 1 53 0 28 0 0 0 chr3 27232520 27232548 -190804610 + AT_rich Low_complexity Low_complexity 1 28 0 2584 118 47 31 chr3 27232608 27233033 -190804125 + Tigger2a DNA MER2_type 1 432 -2 470 352 47 5 chr3 27233327 27233520 -190803638 - MIR SINE MIR -4 258 58 1374 166 7 88 chr3 27235718 27236025 -190801133 + AluJo SINE Alu 31 312 0 405 0 0 0 chr3 27236562 27236607 -190800551 + (TG)n Simple_repeat Simple_repeat 1 45 0 201 74 0 0 chr3 27236607 27236634 -190800524 + (GA)n Simple_repeat Simple_repeat 2 28 0 397 122 27 0 chr3 27236923 27236997 -190800161 + A-rich Low_complexity Low_complexity 4 79 0 276 143 83 12 chr3 27237173 27237257 -190799901 + (TTTAA)n Simple_repeat Simple_repeat 1 90 0 213 319 0 0 chr3 27237274 27237343 -190799815 - L2 LINE L2 0 3313 3245 654 146 0 0 chr3 27239783 27239893 -190797265 + (GA)n Simple_repeat Simple_repeat 1 110 0 6079 130 33 21 chr3 27240366 27241406 -190795752 - L1MA5A LINE L1 -10 7003 5951 11212 210 7 13 chr3 27241571 27244122 -190793036 - L1MA5A LINE L1 -1409 5453 2920 273 198 47 9 chr3 27244895 27245001 -190792157 + (TA)n Simple_repeat Simple_repeat 2 111 0 31 92 0 0 chr3 27245414 27245501 -190791657 + AT_rich Low_complexity Low_complexity 1 87 0 2272 112 0 0 chr3 27246298 27246610 -190790548 + AluSx SINE Alu 1 312 0 327 161 0 0 chr3 27247503 27247559 -190789599 - MER94 DNA DNA -1 133 78 22 0 0 0 chr3 27247613 27247635 -190789523 + AT_rich Low_complexity Low_complexity 1 22 0 754 237 110 5 chr3 27248353 27248900 -190788258 - MER114 LTR ERV 0 648 2 23 86 0 0 chr3 27249371 27249429 -190787729 + AT_rich Low_complexity Low_complexity 1 58 0 258 56 0 0 chr3 27250700 27250736 -190786422 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 237 140 0 20 chr3 27251273 27251323 -190785835 + LTR33A LTR ERVL 4 52 -471 649 274 136 37 chr3 27251336 27251712 -190785446 + L1ME3A LINE L1 3074 3486 -2660 557 257 17 100 chr3 27252138 27252268 -190784890 + MLT1H LTR MaLR 18 157 -392 2254 60 0 11 chr3 27252268 27252552 -190784606 + AluY SINE Alu 1 281 -30 557 257 17 100 chr3 27252552 27252712 -190784446 + MLT1H LTR MaLR 157 327 -222 253 167 42 42 chr3 27252896 27252968 -190784190 + MLT1H LTR MaLR 478 549 0 589 311 74 9 chr3 27252984 27253334 -190783824 + L1ME3A LINE L1 3907 4279 -1867 679 275 137 40 chr3 27253793 27254308 -190782850 + L1ME3A LINE L1 5328 5884 -286 295 214 143 56 chr3 27254607 27254733 -190782425 + MER103 DNA DNA 26 162 -4 204 40 0 0 chr3 27255130 27255155 -190782003 + (A)n Simple_repeat Simple_repeat 1 25 0 764 197 34 30 chr3 27255437 27255671 -190781487 - LTR37A LTR ERV1 -1 425 191 929 193 45 6 chr3 27255719 27255895 -190781263 - MER58B DNA MER1_type 0 341 159 1607 128 88 81 chr3 27256376 27256727 -190780431 + MLT1B LTR MaLR 1 357 -33 1709 177 52 3 chr3 27256727 27257055 -190780103 + MER2 DNA MER2_type 1 344 0 1607 128 88 81 chr3 27257055 27257087 -190780071 + MLT1B LTR MaLR 357 387 -3 455 311 194 47 chr3 27257090 27257585 -190779573 - L2 LINE L2 -896 2418 1851 297 0 0 0 chr3 27257749 27257782 -190779376 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2202 95 0 0 chr3 27257786 27258060 -190779098 - AluSc SINE Alu -35 274 1 276 30 0 0 chr3 27258355 27258388 -190778770 + (T)n Simple_repeat Simple_repeat 1 33 0 15536 40 5 11 chr3 27258410 27261144 -190776014 - L1PA4 LINE L1 -3 6152 3429 5067 172 27 20 chr3 27261750 27263384 -190773774 - L1P4 LINE L1 -384 5782 4139 28 0 0 0 chr3 27263630 27263658 -190773500 + AT_rich Low_complexity Low_complexity 1 28 0 2511 57 7 0 chr3 27263710 27264009 -190773149 - AluSc SINE Alu -8 301 1 214 232 402 0 chr3 27264183 27264295 -190772863 - MER5A DNA MER1_type -7 182 26 1106 181 86 102 chr3 27266132 27266435 -190770723 + AluJb SINE Alu 2 299 -3 314 242 81 48 chr3 27266605 27266729 -190770429 + L1M4 LINE L1 2249 2376 -3770 190 279 82 0 chr3 27268182 27268243 -190768915 + L2 LINE L2 3207 3272 0 2254 104 7 0 chr3 27268561 27268859 -190768299 - AluSq SINE Alu -13 300 1 386 257 20 0 chr3 27268884 27268985 -190768173 - MIR SINE MIR -14 248 146 898 315 99 3 chr3 27269078 27269430 -190767728 + LTR16C LTR ERVL 92 477 -14 256 322 0 22 chr3 27269431 27269521 -190767637 - MIR SINE MIR -127 135 48 567 248 47 51 chr3 27270897 27271111 -190766047 + MLT1J LTR MaLR 38 250 -261 1739 193 42 26 chr3 27271113 27271496 -190765662 + MLT1B LTR MaLR 1 389 -1 1524 118 0 5 chr3 27271517 27271737 -190765421 - L1P LINE L1 -1874 4272 4054 749 52 21 0 chr3 27271737 27271833 -190765325 + L1PA10 LINE L1 6067 6164 -4 546 183 29 0 chr3 27272211 27272315 -190764843 - MER20 DNA MER1_type 0 219 113 693 246 90 20 chr3 27272604 27272905 -190764253 - MER113 DNA MER1_type? -199 322 1 259 367 147 9 chr3 27273083 27273301 -190763857 - MIR SINE MIR 0 262 15 416 350 38 12 chr3 27273832 27273992 -190763166 - MIR3 SINE MIR -9 199 36 286 354 69 0 chr3 27274022 27274152 -190763006 - L3 LINE CR1 -31 1546 1408 1043 250 36 47 chr3 27274220 27274580 -190762578 + L2 LINE L2 2121 2476 -838 544 261 32 6 chr3 27274600 27274757 -190762401 + LTR41 LTR ERVL 6 166 -607 263 196 33 76 chr3 27275189 27275281 -190761877 + LTR41 LTR ERVL 679 766 -7 1121 261 52 50 chr3 27275292 27275694 -190761464 + LTR16A1 LTR ERVL 55 457 0 214 358 0 12 chr3 27275698 27275779 -190761379 - MIR SINE MIR -168 94 15 808 273 45 21 chr3 27277707 27277993 -190759165 + L1ME3A LINE L1 5798 6090 -80 25 65 0 0 chr3 27278167 27278213 -190758945 + AT_rich Low_complexity Low_complexity 1 46 0 335 307 10 10 chr3 27278843 27278944 -190758214 + MIR SINE MIR 42 142 -66 779 158 6 22 chr3 27279745 27279928 -190757230 + CT-rich Low_complexity Low_complexity 1 180 0 293 155 31 113 chr3 27280722 27280767 -190756391 - L1MB4 LINE L1 -1 6179 6145 1382 217 50 4 chr3 27280767 27281048 -190756110 - AluJo SINE Alu -18 294 1 293 155 31 113 chr3 27281048 27281099 -190756059 - L1MB4 LINE L1 -35 6145 6091 2615 146 35 9 chr3 27281107 27281565 -190755593 - L1MA4 LINE L1 -280 6020 5551 348 127 0 0 chr3 27282104 27282159 -190754999 + (CA)n Simple_repeat Simple_repeat 2 56 0 22 56 0 0 chr3 27283311 27283347 -190753811 + AT_rich Low_complexity Low_complexity 1 36 0 210 222 0 0 chr3 27283413 27283449 -190753709 + G-rich Low_complexity Low_complexity 2 37 0 602 267 4 25 chr3 27283449 27283918 -190753240 + C-rich Low_complexity Low_complexity 1 459 0 414 69 0 0 chr3 27284118 27284176 -190752982 + (GGGGA)n Simple_repeat Simple_repeat 1 58 0 288 321 92 25 chr3 27284653 27284849 -190752309 - MIR SINE MIR -14 248 40 637 219 11 115 chr3 27285981 27286260 -190750898 - L2 LINE L2 0 3313 3064 552 272 63 16 chr3 27286352 27286633 -190750525 - LTR16B LTR ERVL -101 363 16 720 294 56 0 chr3 27287768 27287982 -190749176 - MIR SINE MIR -33 229 4 253 294 128 10 chr3 27288636 27288738 -190748420 + L2 LINE L2 2031 2144 -1170 1071 303 67 38 chr3 27288738 27288854 -190748304 + L2 LINE L2 2710 2821 -492 1946 167 107 21 chr3 27288854 27289284 -190747874 - MLT1C LTR MaLR 0 467 1 1071 303 67 38 chr3 27289284 27289736 -190747422 + L2 LINE L2 2821 3300 -13 242 361 70 51 chr3 27290333 27290491 -190746667 + L2 LINE L2 3103 3263 -9 1393 289 96 21 chr3 27291124 27291644 -190745514 + MER69 DNA AcHobo 1 559 -1967 693 222 83 28 chr3 27291620 27291872 -190745286 + MER69 DNA AcHobo 2260 2525 -1 * 2232 95 0 13 chr3 27292082 27292386 -190744772 - AluSc SINE Alu -9 300 1 180 152 0 0 chr3 27293742 27293775 -190743383 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 773 193 138 0 chr3 27294797 27294942 -190742216 - FRAM SINE Alu -1 165 1 1100 308 106 14 chr3 27295745 27296187 -190740971 - MLT1H1 LTR MaLR -53 502 20 594 265 135 30 chr3 27297108 27297338 -190739820 - MIR SINE MIR -6 256 3 188 378 9 27 chr3 27297501 27297612 -190739546 + MIR SINE MIR 37 145 -63 707 224 85 6 chr3 27297681 27297846 -190739312 - MER45A DNA AcHobo 0 178 1 293 316 74 111 chr3 27298425 27299070 -190738088 + L2 LINE L2 2637 3272 0 189 366 43 21 chr3 27299969 27300062 -190737096 + MIR SINE MIR 46 140 -122 643 259 103 22 chr3 27300199 27300384 -190736774 + MIR SINE MIR 63 262 0 720 343 83 41 chr3 27300464 27301024 -190736134 - L2 LINE L2 -26 3246 2673 724 159 140 6 chr3 27301064 27301221 -190735937 + MER5A DNA MER1_type 9 186 -3 339 333 14 54 chr3 27301221 27301368 -190735790 - L2 LINE L2 -722 2592 2452 468 316 38 27 chr3 27302638 27302929 -190734229 - MLT1L LTR MaLR -14 601 225 235 336 41 34 chr3 27303223 27303369 -190733789 - MIR SINE MIR -111 151 5 493 255 183 7 chr3 27303536 27303689 -190733469 + MER5A DNA MER1_type 10 189 0 607 284 76 47 chr3 27303698 27303973 -190733185 + L2 LINE L2 3029 3311 -2 1237 193 47 22 chr3 27305219 27305536 -190731622 + AluJo SINE Alu 1 324 0 224 318 79 0 chr3 27306610 27306673 -190730485 + L2 LINE L2 3141 3208 -64 1517 99 5 0 chr3 27306747 27306960 -190730198 + L1PB1 LINE L1 5935 6148 -3 21 0 0 0 chr3 27307083 27307104 -190730054 + AT_rich Low_complexity Low_complexity 1 21 0 362 272 25 51 chr3 27308281 27308439 -190728719 + MER117 DNA MER1_type 44 197 0 2581 52 0 0 chr3 27308751 27309060 -190728098 + AluY SINE Alu 1 309 -2 649 211 0 8 chr3 27309461 27309589 -190727569 + FLAM_A SINE Alu 3 129 -4 503 79 34 0 chr3 27309681 27309770 -190727388 + L1PA13 LINE L1 6071 6162 -1 21 36 0 0 chr3 27309770 27309798 -190727360 + AT_rich Low_complexity Low_complexity 1 28 0 37 69 0 0 chr3 27309932 27310004 -190727154 + AT_rich Low_complexity Low_complexity 1 72 0 2265 121 0 3 chr3 27310077 27310390 -190726768 + AluSx SINE Alu 1 312 0 42 20 0 0 chr3 27310917 27310966 -190726192 + AT_rich Low_complexity Low_complexity 1 49 0 708 249 144 18 chr3 27311080 27311309 -190725849 - MIR SINE MIR 0 262 5 289 241 28 0 chr3 27311444 27311552 -190725606 + (TA)n Simple_repeat Simple_repeat 2 112 0 2189 239 55 73 chr3 27311660 27312486 -190724672 - MER21B LTR ERV1 -52 811 1 208 269 125 19 chr3 27312531 27312635 -190724523 - L3b LINE CR1 -166 1417 1303 375 302 89 40 chr3 27313955 27314180 -190722978 - MIR SINE MIR -6 256 21 513 216 64 0 chr3 27314298 27314423 -190722735 + MER58B DNA MER1_type 208 340 -1 2806 107 49 0 chr3 27315295 27315742 -190721416 - THE1A-int LTR MaLR -535 1045 577 1626 77 13 0 chr3 27315742 27315975 -190721183 - THE1A-int LTR MaLR -1344 236 1 2008 121 35 11 chr3 27315975 27316322 -190720836 - THE1A LTR MaLR 0 355 1 393 256 0 58 chr3 27316866 27317003 -190720155 + L1ME LINE L1 5530 5658 -463 23 33 0 0 chr3 27317237 27317267 -190719891 + AT_rich Low_complexity Low_complexity 1 30 0 271 356 61 44 chr3 27318591 27318771 -190718387 - MER91A DNA MER1_type -12 184 2 202 182 0 0 chr3 27319502 27319535 -190717623 + polypurine Low_complexity Low_complexity 1 33 0 991 161 56 5 chr3 27319600 27319802 -190717356 + MER6 DNA MER2_type -13 198 -78 1509 70 4 3 chr3 27319802 27320037 -190717121 - pTR5 LTR ERV1 -2053 385 49 321 235 0 0 chr3 27320037 27320118 -190717040 - LTR30 LTR ERV1 -98 624 544 2092 167 103 37 chr3 27320122 27320874 -190716284 - pTR5 LTR ERV1 -417 2021 741 2440 144 22 2 chr3 27320874 27321283 -190715875 + MER6 DNA MER2_type 188 864 -1 674 303 45 0 chr3 27323323 27323501 -190713657 - MER91A DNA MER1_type -10 186 1 24 0 0 0 chr3 27323975 27323999 -190713159 + AT_rich Low_complexity Low_complexity 1 24 0 496 373 34 28 chr3 27324123 27324450 -190712708 - L3 LINE CR1 -15 1562 1234 388 310 45 20 chr3 27325148 27325432 -190711726 - MLT1L LTR MaLR 0 615 224 24 0 0 0 chr3 27325612 27325636 -190711522 + AT_rich Low_complexity Low_complexity 1 24 0 572 61 0 12 chr3 27325700 27325782 -190711376 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 27 0 0 0 chr3 27325839 27325866 -190711292 + AT_rich Low_complexity Low_complexity 1 27 0 1191 319 94 33 chr3 27326179 27326395 -190710763 + L2 LINE L2 2034 2235 -1079 2423 82 3 0 chr3 27326395 27326701 -190710457 + AluSp SINE Alu 1 307 -6 1191 319 94 33 chr3 27326701 27327088 -190710070 + L2 LINE L2 2235 2674 -640 200 180 0 20 chr3 27327200 27327250 -190709908 + CT-rich Low_complexity Low_complexity 4 52 0 515 333 0 0 chr3 27327339 27327486 -190709672 - MIR3 SINE MIR -3 205 59 344 287 0 42 chr3 27327815 27327982 -190709176 + G-rich Low_complexity Low_complexity 3 162 0 211 289 0 40 chr3 27328054 27328130 -190709028 + G-rich Low_complexity Low_complexity 2 74 0 208 70 47 23 chr3 27328516 27328559 -190708599 + GA-rich Low_complexity Low_complexity 2 45 0 299 53 0 0 chr3 27328590 27328628 -190708530 + (CA)n Simple_repeat Simple_repeat 1 38 0 229 233 33 100 chr3 27328772 27328892 -190708266 - L2 LINE L2 -211 3102 2991 222 367 50 25 chr3 27328985 27329105 -190708053 - L2 LINE L2 -502 2812 2690 332 279 25 81 chr3 27329194 27329355 -190707803 + L3 LINE CR1 1425 1576 -1 326 326 10 77 chr3 27329547 27329743 -190707415 - MER5A DNA MER1_type 0 189 7 298 340 122 13 chr3 27329864 27330020 -190707138 + MIR SINE MIR 76 248 -14 9572 96 66 13 chr3 27380032 27381068 -190656090 - L1PBa LINE L1 -3944 2919 1624 2378 94 0 0 chr3 27381068 27381377 -190655781 + AluY SINE Alu 1 309 -2 9572 96 66 13 chr3 27381377 27381934 -190655224 - L1PBa LINE L1 -5239 1624 1098 1167 122 5 0 chr3 27381935 27382123 -190655035 - L1PBa LINE L1 -5814 1049 861 1790 149 12 28 chr3 27382127 27382448 -190654710 - THE1C LTR MaLR -40 335 20 5810 101 16 19 chr3 27382448 27384256 -190652902 + L1PA13 LINE L1 4354 6154 -9 243 0 0 0 chr3 27384256 27384283 -190652875 + (TA)n Simple_repeat Simple_repeat 1 27 0 716 281 128 76 chr3 27384648 27385146 -190652012 - MLT1H1 LTR MaLR 0 555 32 1858 155 7 0 chr3 27385205 27385489 -190651669 - AluSx SINE Alu -26 286 1 412 320 69 36 chr3 27385648 27385895 -190651263 + MIR SINE MIR 2 256 -6 234 0 0 0 chr3 27389150 27389176 -190647982 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2216 84 0 3 chr3 27389195 27389479 -190647679 - AluSc SINE Alu -26 283 1 1823 107 0 4 chr3 27389484 27389754 -190647404 - L1MA3 LINE L1 0 6305 6037 2636 185 136 49 chr3 27390081 27390511 -190646647 - L1MD2 LINE L1 -289 6053 5662 2217 113 7 0 chr3 27390511 27390820 -190646338 - AluSx SINE Alu 0 312 2 2636 185 136 49 chr3 27390820 27391189 -190645969 - L1MD2 LINE L1 -680 5662 5187 957 198 145 12 chr3 27391189 27391437 -190645721 - MER97c DNA MER1_type? -809 281 1 244 275 77 0 chr3 27391536 27391627 -190645531 + HAL1b LINE L1 578 675 -673 663 275 103 55 chr3 27391809 27392176 -190644982 - LTR16A LTR ERVL -48 402 18 509 204 10 0 chr3 27392244 27392347 -190644811 + FAM SINE Alu 71 174 -11 282 260 73 13 chr3 27392614 27392764 -190644394 + L1ME4a LINE L1 5963 6121 0 388 273 94 31 chr3 27393035 27393291 -190643867 - L1MD2 LINE L1 -2153 3976 3705 447 202 0 0 chr3 27393304 27393398 -190643760 + (TA)n Simple_repeat Simple_repeat 1 94 0 360 303 115 69 chr3 27393612 27394414 -190642744 - L1MD2 LINE L1 -2682 3447 2609 21 82 0 0 chr3 27394591 27394640 -190642518 + AT_rich Low_complexity Low_complexity 1 49 0 228 299 69 23 chr3 27394997 27395084 -190642074 + MIR SINE MIR 20 110 -152 274 383 22 36 chr3 27395553 27395775 -190641383 + L2 LINE L2 2536 2754 -560 272 407 38 25 chr3 27395951 27396187 -190640971 + L2 LINE L2 2699 2937 -377 213 39 0 0 chr3 27396283 27396309 -190640849 + (CCA)n Simple_repeat Simple_repeat 3 28 0 226 293 67 13 chr3 27396479 27396554 -190640604 + MLT1J LTR MaLR 72 150 -361 316 296 21 88 chr3 27396600 27396840 -190640318 - L1ME3A LINE L1 -219 5951 5728 240 357 10 10 chr3 27396947 27397045 -190640113 - L1MD2 LINE L1 -5595 524 427 610 286 84 14 chr3 27397849 27398062 -190639096 + MIR SINE MIR 20 247 -15 27 0 0 0 chr3 27398219 27398246 -190638912 + AT_rich Low_complexity Low_complexity 1 27 0 1078 8 0 0 chr3 27398246 27398369 -190638789 - L1HS LINE L1 0 6155 6033 3841 159 50 18 chr3 27398683 27399369 -190637789 - MER50 LTR ERV1 -26 708 1 407 273 135 22 chr3 27399481 27399792 -190637366 + L1MC/D LINE L1 5267 5612 -2196 191 309 12 24 chr3 27402695 27402779 -190634379 - MIR SINE MIR -56 206 124 23 0 0 0 chr3 27403706 27403729 -190633429 + AT_rich Low_complexity Low_complexity 1 23 0 34 0 0 0 chr3 27407046 27407080 -190630078 + AT_rich Low_complexity Low_complexity 1 34 0 36825 63 2 2 chr3 27408222 27413774 -190623384 + L1PA5 LINE L1 596 6145 -9 401 264 16 25 chr3 27414090 27414211 -190622947 - MER103 DNA DNA -46 120 1 219 371 77 21 chr3 27414499 27414642 -190622516 - MIR3 SINE MIR 0 208 58 434 302 49 65 chr3 27414927 27415346 -190621812 + MLT1L LTR MaLR 120 587 -28 362 269 71 50 chr3 27415820 27416002 -190621156 + HAL1 LINE L1 1365 1550 -957 689 185 23 6 chr3 27416030 27416203 -190620955 + CT-rich Low_complexity Low_complexity 2 177 0 426 311 44 11 chr3 27417049 27417229 -190619929 + L1M4 LINE L1 2276 2461 -3685 912 209 17 0 chr3 27417410 27417582 -190619576 - MER20 DNA MER1_type -1 218 44 290 250 12 0 chr3 27417597 27417677 -190619481 + L1MC4a LINE L1 5851 5931 -1877 235 255 34 67 chr3 27418103 27418252 -190618906 + L1MC/D LINE L1 5678 5821 -1987 797 244 42 9 chr3 27418258 27418475 -190618683 + MER58A DNA MER1_type 1 224 0 270 234 188 73 chr3 27418495 27418713 -190618445 - MER20B DNA MER1_type -22 761 519 278 316 115 7 chr3 27419205 27419344 -190617814 - MER20B DNA MER1_type -582 201 48 1688 211 75 56 chr3 27419985 27420505 -190616653 - MER34 LTR ERV1 0 542 13 1807 143 47 7 chr3 27420538 27420838 -190616320 - AluJb SINE Alu 0 312 1 202 315 0 0 chr3 27421960 27422014 -190615144 + CT-rich Low_complexity Low_complexity 4 57 0 307 275 47 31 chr3 27423271 27423464 -190613694 - L1ME4a LINE L1 -237 5884 5689 1047 308 50 8 chr3 27423477 27423837 -190613321 - L2 LINE L2 0 3313 2939 22 0 0 0 chr3 27424554 27424576 -190612582 + AT_rich Low_complexity Low_complexity 1 22 0 252 306 35 35 chr3 27424884 27425054 -190612104 + L2 LINE L2 2785 2954 -360 324 59 24 47 chr3 27425281 27425366 -190611792 + (TA)n Simple_repeat Simple_repeat 1 83 0 21 0 0 0 chr3 27426734 27426755 -190610403 + AT_rich Low_complexity Low_complexity 1 21 0 191 315 0 0 chr3 27426920 27426978 -190610180 - MIR SINE MIR -63 145 97 615 345 97 50 chr3 27427141 27427948 -190609210 + L2 LINE L2 1932 2776 -538 226 318 139 35 chr3 27428073 27428246 -190608912 + L2 LINE L2 3119 3309 -4 259 310 43 26 chr3 27428249 27428365 -190608793 - MIR SINE MIR -96 166 49 26 50 0 0 chr3 27428365 27428405 -190608753 + AT_rich Low_complexity Low_complexity 1 40 0 42187 37 23 0 chr3 27428497 27434512 -190602646 - L1PA2 LINE L1 -2 6153 1 312 207 35 11 chr3 27435359 27435446 -190601712 - MER53 DNA DNA -97 92 4 610 325 109 32 chr3 27435938 27436249 -190600909 - MLT1J1 LTR MaLR -110 336 2 2243 103 3 3 chr3 27437246 27437547 -190599611 + AluSc SINE Alu 1 301 -8 947 244 29 22 chr3 27439074 27439389 -190597769 + L1ME3A LINE L1 4790 5106 -1040 371 287 106 51 chr3 27439457 27439750 -190597408 + L1ME3A LINE L1 5323 5631 -539 369 284 98 5 chr3 27439795 27439989 -190597169 + L1ME3A LINE L1 5945 6156 -14 368 345 88 5 chr3 27440184 27440378 -190596780 + MIR SINE MIR 37 246 -16 195 222 0 0 chr3 27440537 27440582 -190596576 + (TAA)n Simple_repeat Simple_repeat 1 45 0 917 270 66 38 chr3 27440669 27441065 -190596093 - MLT1I LTR MaLR -2 407 1 1915 120 24 14 chr3 27441267 27441559 -190595599 - AluSx SINE Alu -17 295 1 28 29 0 0 chr3 27441815 27441850 -190595308 + AT_rich Low_complexity Low_complexity 1 35 0 320 202 27 32 chr3 27442489 27442608 -190594550 + L1ME LINE L1 5426 5545 -621 195 354 46 0 chr3 27442623 27442688 -190594470 + L3 LINE CR1 1038 1105 -472 431 309 70 45 chr3 27442875 27443118 -190594040 + L3 LINE CR1 1130 1378 -199 441 218 27 0 chr3 27443120 27443230 -190593928 + L1MA4 LINE L1 6188 6300 0 260 326 106 28 chr3 27445256 27445397 -190591761 + MIR SINE MIR 61 212 -50 654 202 12 152 chr3 27446668 27446911 -190590247 + MIR SINE MIR 30 237 -25 904 238 58 0 chr3 27447012 27447218 -190589940 - MLT1E3 LTR MaLR 0 624 407 1715 193 3 7 chr3 27447515 27447816 -190589342 - AluJo SINE Alu -12 300 1 552 352 38 0 chr3 27447818 27448028 -190589130 + MIR SINE MIR 45 262 0 221 214 0 24 chr3 27448232 27448316 -190588842 + CT-rich Low_complexity Low_complexity 3 84 0 205 183 50 0 chr3 27449960 27450020 -190587138 + (TA)n Simple_repeat Simple_repeat 2 64 0 201 74 0 0 chr3 27450205 27450232 -190586926 + (A)n Simple_repeat Simple_repeat 1 27 0 245 290 151 43 chr3 27450719 27450905 -190586253 + MIR SINE MIR 52 257 -5 363 186 0 0 chr3 27451806 27451865 -190585293 - L2 LINE L2 0 3313 3255 261 57 0 0 chr3 27452363 27452398 -190584760 + (GA)n Simple_repeat Simple_repeat 1 35 0 22 35 0 0 chr3 27452866 27452895 -190584263 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 27453226 27453247 -190583911 + AT_rich Low_complexity Low_complexity 1 21 0 203 138 0 0 chr3 27454539 27454568 -190582590 + (GGAGAA)n Simple_repeat Simple_repeat 3 31 0 339 391 19 6 chr3 27455160 27455321 -190581837 + MIR3 SINE MIR 17 179 -29 254 280 21 0 chr3 27455370 27455463 -190581695 + L1MC4 LINE L1 6611 6705 -1337 278 232 293 0 chr3 27456041 27456140 -190581018 - L2 LINE L2 -15 3298 3171 418 308 63 0 chr3 27456532 27456675 -190580483 + MIR SINE MIR 110 261 -1 216 0 0 0 chr3 27458118 27458142 -190579016 + (A)n Simple_repeat Simple_repeat 1 24 0 316 283 10 20 chr3 27459027 27459126 -190578032 - MER5A DNA MER1_type -83 106 9 293 315 39 24 chr3 27459931 27460058 -190577100 - MER103 DNA DNA -2 164 36 215 204 0 41 chr3 27460431 27460480 -190576678 + (TATATG)n Simple_repeat Simple_repeat 3 49 0 351 0 0 0 chr3 27461247 27461286 -190575872 + (TA)n Simple_repeat Simple_repeat 1 39 0 255 282 76 32 chr3 27462931 27463208 -190573950 - L1M4 LINE L1 -1528 4618 4330 259 345 43 9 chr3 27463589 27463705 -190573453 + MIR SINE MIR 33 152 -56 284 275 0 0 chr3 27464584 27464653 -190572505 - MIR3 SINE MIR -4 204 136 258 323 0 0 chr3 27464735 27464800 -190572358 + MIR3 SINE MIR 112 176 -32 13496 204 23 19 chr3 27465235 27469649 -190567509 + L1PA16 LINE L1 709 5111 -1758 273 29 0 0 chr3 27469649 27469683 -190567475 + (CA)n Simple_repeat Simple_repeat 1 34 0 13496 204 23 19 chr3 27469683 27471442 -190565716 + L1PA16 LINE L1 5111 6862 -7 1199 179 18 14 chr3 27471443 27471666 -190565492 + MLT1B LTR MaLR 165 388 -2 244 333 49 14 chr3 27472578 27472722 -190564436 - MIR SINE MIR -11 251 103 22 35 0 0 chr3 27472832 27472861 -190564297 + AT_rich Low_complexity Low_complexity 1 29 0 653 243 50 30 chr3 27473050 27473252 -190563906 - MIR SINE MIR 0 262 57 417 297 87 48 chr3 27473441 27473575 -190563583 - L1ME LINE L1 -445 5702 5575 399 66 105 53 chr3 27473575 27473651 -190563507 + MADE1 DNA Mariner 1 80 0 417 297 87 48 chr3 27473651 27473924 -190563234 - L1ME LINE L1 -572 5575 5279 407 321 110 52 chr3 27474340 27474841 -190562317 - L1ME LINE L1 -5279 840 311 313 175 21 113 chr3 27475036 27475133 -190562025 + L1MC4 LINE L1 6620 6707 -1335 268 388 56 6 chr3 27475971 27476131 -190561027 - L2 LINE L2 -238 3034 2867 422 295 60 12 chr3 27476317 27476483 -190560675 - Charlie8 DNA MER1_type -2239 178 5 2747 10 0 3 chr3 27477074 27477385 -190559773 - AluY SINE Alu -1 310 1 302 311 141 23 chr3 27477871 27478048 -190559110 + MIR SINE MIR 18 215 -47 22 0 0 0 chr3 27479665 27479687 -190557471 + AT_rich Low_complexity Low_complexity 1 22 0 304 365 81 5 chr3 27480280 27480477 -190556681 - MIR SINE MIR 0 262 51 343 322 35 9 chr3 27480560 27480675 -190556483 - L2 LINE L2 -6 3266 3149 26 30 0 0 chr3 27481147 27481180 -190555978 + AT_rich Low_complexity Low_complexity 1 33 0 4496 113 35 0 chr3 27481181 27481522 -190555636 - L1PB1 LINE L1 -6 6145 5817 189 0 0 0 chr3 27481522 27481543 -190555615 + (TG)n Simple_repeat Simple_repeat 2 22 0 4496 113 35 0 chr3 27481543 27481889 -190555269 - L1PB1 LINE L1 -334 5817 5434 3515 209 29 7 chr3 27481889 27482745 -190554413 + L1PB1 LINE L1 4534 5406 -754 252 261 225 46 chr3 27483630 27483910 -190553248 + L3 LINE CR1 1070 1399 -178 216 322 85 34 chr3 27484393 27484511 -190552647 + L3 LINE CR1 1371 1494 -83 602 255 49 27 chr3 27486449 27486633 -190550525 - MIR SINE MIR -16 246 59 2443 51 0 10 chr3 27487048 27487359 -190549799 - AluY SINE Alu -3 308 1 3671 95 33 0 chr3 27487460 27488006 -190549152 - L1PA13 LINE L1 0 6163 5600 9941 168 15 27 chr3 27488006 27489942 -190547216 - L1PA13 LINE L1 -1146 5000 3088 417 299 103 60 chr3 27491352 27491536 -190545622 - MIR3 SINE MIR -11 197 6 835 181 30 35 chr3 27491839 27492038 -190545120 + L1MD3 LINE L1 7796 7993 -2 1192 142 22 13 chr3 27492865 27493090 -190544068 + L1MA9 LINE L1 6086 6312 0 335 256 178 0 chr3 27493152 27493242 -190543916 + MIR SINE MIR 48 153 -109 233 342 51 8 chr3 27493279 27493396 -190543762 + MIR SINE MIR 137 258 -4 324 188 79 14 chr3 27494740 27494828 -190542330 + MER5A DNA MER1_type 76 188 -1 270 218 11 35 chr3 27495277 27495364 -190541794 - L1MA10 LINE L1 -9 6325 6241 277 322 26 26 chr3 27495451 27495566 -190541592 - L2 LINE L2 -200 3072 2958 248 257 57 38 chr3 27496703 27496808 -190540350 + MIR3 SINE MIR 81 187 -21 450 316 6 6 chr3 27497762 27497933 -190539225 + GA-rich Low_complexity Low_complexity 2 172 0 21 0 0 0 chr3 27498075 27498096 -190539062 + AT_rich Low_complexity Low_complexity 1 21 0 2469 123 0 8 chr3 27498217 27498584 -190538574 - THE1B LTR MaLR 0 364 1 289 270 63 9 chr3 27498642 27498753 -190538405 - MIR SINE MIR -3 259 143 552 248 81 10 chr3 27498771 27498969 -190538189 + LTR50 LTR ERVL 9 220 -575 425 309 75 12 chr3 27499042 27499337 -190537821 + LTR33A LTR ERVL 291 523 0 440 269 10 0 chr3 27499343 27499447 -190537711 - MIR SINE MIR -111 151 47 188 286 13 78 chr3 27499758 27499835 -190537323 - L2 LINE L2 -67 3205 3134 275 279 47 0 chr3 27500767 27500853 -190536305 - MIR SINE MIR -71 191 102 45 79 0 0 chr3 27500885 27500986 -190536172 + AT_rich Low_complexity Low_complexity 1 101 0 407 200 0 9 chr3 27501258 27501363 -190535795 + (TA)n Simple_repeat Simple_repeat 1 104 0 2305 266 83 38 chr3 27501576 27503383 -190533775 + L1ME3A LINE L1 4266 6157 -13 235 327 55 42 chr3 27503456 27503673 -190533485 + HAL1 LINE L1 2245 2464 -43 315 410 36 7 chr3 27503729 27503868 -190533290 - L2 LINE L2 -9 3263 3121 238 239 11 11 chr3 27504661 27504749 -190532409 + GA-rich Low_complexity Low_complexity 3 90 0 447 286 94 54 chr3 27506027 27506230 -190530928 - MIR SINE MIR -31 231 21 243 0 0 0 chr3 27507177 27507204 -190529954 + (TA)n Simple_repeat Simple_repeat 2 28 0 225 248 178 0 chr3 27509459 27509560 -190527598 - MIR SINE MIR -71 191 73 1586 167 3 14 chr3 27509988 27510281 -190526877 + AluJb SINE Alu 1 290 -22 355 370 7 7 chr3 27510296 27510431 -190526727 - L2 LINE L2 -1 3312 3178 222 308 0 13 chr3 27510422 27510500 -190526658 - L2 LINE L2 -711 2603 2527 * 2808 139 12 10 chr3 27510768 27511250 -190525908 + L1PB4 LINE L1 5673 6155 -1 1663 171 134 0 chr3 27511425 27511746 -190525412 + MLT1A1 LTR MaLR 2 365 0 477 0 0 0 chr3 27512030 27512083 -190525075 + (TG)n Simple_repeat Simple_repeat 2 54 0 206 328 0 30 chr3 27513528 27513595 -190523563 + L2 LINE L2 3249 3313 0 200 280 40 67 chr3 27514214 27514289 -190522869 - L2 LINE L2 -12 3260 3188 21 36 0 0 chr3 27514310 27514338 -190522820 + AT_rich Low_complexity Low_complexity 1 28 0 418 306 102 25 chr3 27515869 27516065 -190521093 - MIR SINE MIR -7 255 45 5479 138 31 28 chr3 27516379 27517701 -190519457 - L1MA8 LINE L1 -34 6257 4933 204 97 0 0 chr3 27517830 27517861 -190519297 + (TC)n Simple_repeat Simple_repeat 2 32 0 312 276 70 65 chr3 27518469 27518587 -190518571 - L1ME LINE L1 -5852 218 97 2363 118 36 16 chr3 27518587 27518952 -190518206 + THE1C LTR MaLR 3 374 -1 312 276 70 65 chr3 27518952 27519047 -190518111 - L1ME LINE L1 -5973 97 4 6822 53 23 5 chr3 27519555 27520832 -190516326 - L1PA6 LINE L1 -3 6151 4839 1697 140 81 0 chr3 27520841 27521126 -190516032 - MER2 DNA MER2_type -37 308 1 425 333 102 20 chr3 27521329 27521789 -190515369 + L1ME LINE L1 5318 5815 -347 1143 286 67 30 chr3 27521943 27522642 -190514516 + L1M4 LINE L1 4650 5374 -772 22 0 0 0 chr3 27522771 27522793 -190514365 + AT_rich Low_complexity Low_complexity 1 22 0 9120 115 21 23 chr3 27523010 27523810 -190513348 + Tigger1 DNA MER2_type 1002 1802 -616 1718 169 33 3 chr3 27523810 27524111 -190513047 - AluJo SINE Alu -2 310 1 9120 115 21 23 chr3 27524111 27524536 -190512622 + Tigger1 DNA MER2_type 1802 2226 -192 2292 97 10 0 chr3 27524536 27524846 -190512312 - AluSp SINE Alu 0 313 1 9120 115 21 23 chr3 27524846 27525039 -190512119 + Tigger1 DNA MER2_type 2226 2418 0 285 98 0 0 chr3 27525186 27525227 -190511931 + (CA)n Simple_repeat Simple_repeat 2 42 0 368 313 119 51 chr3 27525561 27526173 -190510985 + L2 LINE L2 2636 3312 -1 207 295 77 13 chr3 27526397 27526475 -190510683 + L3b LINE CR1 1296 1378 -205 22 35 0 0 chr3 27526905 27526934 -190510224 + AT_rich Low_complexity Low_complexity 1 29 0 1106 110 0 0 chr3 27527324 27527479 -190509679 - AluSg/x SINE Alu -11 301 147 28 29 0 0 chr3 27527938 27527973 -190509185 + AT_rich Low_complexity Low_complexity 1 35 0 30 27 0 0 chr3 27528726 27528763 -190508395 + AT_rich Low_complexity Low_complexity 1 37 0 365 300 57 76 chr3 27529437 27529647 -190507511 - MIR SINE MIR -29 233 28 362 177 25 13 chr3 27529821 27529900 -190507258 + L1ME3A LINE L1 6086 6165 -5 468 0 0 0 chr3 27530081 27530133 -190507025 + (TG)n Simple_repeat Simple_repeat 2 53 0 196 274 0 0 chr3 27530140 27530191 -190506967 - MIR3 SINE MIR -4 204 154 2219 109 36 20 chr3 27530207 27530565 -190506593 + THE1B LTR MaLR 1 364 0 182 369 106 19 chr3 27530824 27530984 -190506174 - MIR SINE MIR -15 247 74 21 0 0 0 chr3 27532073 27532094 -190505064 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 27533497 27533518 -190503640 + AT_rich Low_complexity Low_complexity 1 21 0 301 338 150 33 chr3 27586771 27587132 -190450026 - L2 LINE L2 0 3272 2870 534 65 0 13 chr3 27587342 27587419 -190449739 - L1PA5 LINE L1 -1 6153 6078 2297 146 32 0 chr3 27588045 27588450 -190448708 + L1MA4 LINE L1 5882 6299 -1 227 398 62 0 chr3 27588805 27588918 -190448240 + MIR SINE MIR 16 135 -73 2431 74 0 0 chr3 27590934 27591233 -190445925 + AluY SINE Alu 13 311 0 294 242 36 113 chr3 27593986 27594180 -190442978 - MIR SINE MIR 0 262 84 2515 141 14 16 chr3 27594281 27594715 -190442443 - Tigger2a DNA MER2_type 0 434 2 291 289 126 44 chr3 27595416 27595575 -190441583 + L3 LINE CR1 1355 1526 -51 248 358 131 7 chr3 27595586 27595723 -190441435 + MER5A DNA MER1_type 36 189 0 232 329 0 13 chr3 27595854 27595933 -190441225 - MER5A DNA MER1_type 0 189 112 463 299 58 6 chr3 27596801 27596975 -190440183 + MIR SINE MIR 74 256 -6 371 275 28 39 chr3 27597002 27597180 -190439978 + CT-rich Low_complexity Low_complexity 3 178 0 511 255 161 19 chr3 27598853 27599014 -190438144 + MER5A DNA MER1_type 4 187 -2 2341 101 0 0 chr3 27599022 27599330 -190437828 + AluSc SINE Alu 1 308 -1 397 255 20 0 chr3 27599361 27599463 -190437695 - MER5B DNA MER1_type 0 178 75 419 143 214 0 chr3 27599466 27599550 -190437608 + MER5A DNA MER1_type 88 189 0 917 306 41 9 chr3 27600533 27600853 -190436305 - LTR16C LTR ERVL -14 477 148 350 195 13 0 chr3 27600980 27601057 -190436101 - LTR41 LTR ERVL -1 772 695 379 127 28 0 chr3 27601379 27601450 -190435708 - LTR41 LTR ERVL -583 190 118 1857 156 80 62 chr3 27601621 27602070 -190435088 - MSTB2 LTR MaLR 0 457 1 352 123 0 74 chr3 27602082 27602163 -190434995 + MADE1 DNA Mariner 6 80 0 252 0 0 0 chr3 27602637 27602665 -190434493 + (A)n Simple_repeat Simple_repeat 1 28 0 2274 76 0 0 chr3 27602669 27602971 -190434187 + L1PA6 LINE L1 5851 6152 -2 189 347 74 25 chr3 27603441 27603562 -190433596 + L3 LINE CR1 1440 1566 -11 378 304 126 0 chr3 27604097 27604232 -190432926 - MIR SINE MIR -14 248 97 843 303 24 12 chr3 27604550 27604804 -190432354 - MIR SINE MIR -3 259 3 202 237 0 34 chr3 27605713 27605772 -190431386 + CT-rich Low_complexity Low_complexity 2 58 0 1763 247 99 53 chr3 27606229 27606641 -190430517 + MLT1E LTR MaLR 1 448 -145 1042 156 62 9 chr3 27606641 27606866 -190430292 - L1MA8 LINE L1 -4 6287 6051 1763 247 99 53 chr3 27606866 27607020 -190430138 + MLT1E LTR MaLR 448 593 0 220 300 0 20 chr3 27607860 27607910 -190429248 + MIR SINE MIR 20 68 -194 18879 172 62 23 chr3 27607914 27608387 -190428771 - L1 LINE L1 -2106 5459 5005 1755 183 0 0 chr3 27608387 27608671 -190428487 - AluJo SINE Alu -9 303 20 18879 172 62 23 chr3 27608671 27610567 -190426591 - L1 LINE L1 -2560 5005 3183 2259 117 3 0 chr3 27610567 27610867 -190426291 - AluSp SINE Alu -12 301 1 18879 172 62 23 chr3 27610867 27611822 -190425336 - L1 LINE L1 -4382 3183 2266 201 74 0 0 chr3 27611822 27611849 -190425309 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 18879 172 62 23 chr3 27611849 27613761 -190423397 - L1 LINE L1 -5299 2266 17 1672 176 10 7 chr3 27614369 27614658 -190422500 + AluJo SINE Alu 1 290 -22 444 151 0 2 chr3 27614928 27615005 -190422153 - L1PB3 LINE L1 -56 6095 6020 7410 35 6 1 chr3 27615006 27616583 -190420575 - L1PA4 LINE L1 0 6155 4574 273 208 69 14 chr3 27616873 27616945 -190420213 + L2 LINE L2 3173 3248 -65 217 227 0 0 chr3 27616981 27617025 -190420133 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 1617 226 106 22 chr3 27618728 27619192 -190417966 + L1ME1 LINE L1 5659 6161 -5 33 66 0 0 chr3 27619196 27619257 -190417901 + AT_rich Low_complexity Low_complexity 1 61 0 1359 214 191 19 chr3 27619399 27619829 -190417329 + MLT1D LTR MaLR 1 504 -1 342 0 0 0 chr3 27620991 27621029 -190416129 + (CA)n Simple_repeat Simple_repeat 2 39 0 312 27 0 0 chr3 27621028 27621065 -190416093 + (TC)n Simple_repeat Simple_repeat 1 37 0 * 1779 175 0 10 chr3 27621086 27621383 -190415775 - AluSx SINE Alu -18 294 1 30 27 0 0 chr3 27621551 27621588 -190415570 + AT_rich Low_complexity Low_complexity 1 37 0 267 206 79 0 chr3 27621669 27621732 -190415426 + L1ME LINE L1 5547 5614 -507 2725 156 0 5 chr3 27624193 27624623 -190412535 + MSTA LTR MaLR 1 428 0 354 298 77 40 chr3 27624759 27625007 -190412151 - L1M4 LINE L1 -1299 4847 4591 278 130 130 0 chr3 27625036 27625105 -190412053 + L1MA8 LINE L1 6209 6286 -5 23 33 0 0 chr3 27625195 27625225 -190411933 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr3 27625275 27625304 -190411854 + AT_rich Low_complexity Low_complexity 1 29 0 1357 183 50 47 chr3 27625433 27625721 -190411437 - L1MC2 LINE L1 -8 6336 6045 5012 111 83 0 chr3 27625721 27626484 -190410674 - LTR12 LTR ERV1 0 826 1 1357 183 50 47 chr3 27626484 27626512 -190410646 - L1MC2 LINE L1 -299 6045 6019 1220 68 6 45 chr3 27626512 27626689 -190410469 + AluY SINE Alu 134 303 -8 1046 171 5 32 chr3 27626732 27626948 -190410210 - L1MC2 LINE L1 -327 6017 5808 582 82 0 0 chr3 27626969 27627054 -190410104 - Alu SINE Alu 0 309 225 1009 81 0 0 chr3 27627054 27627190 -190409968 + AluY SINE Alu 169 304 -7 225 222 0 19 chr3 27627732 27627786 -190409372 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 21 71 0 0 chr3 27629466 27629508 -190407650 + AT_rich Low_complexity Low_complexity 1 42 0 385 287 149 23 chr3 27629790 27629964 -190407194 + MLT1I LTR MaLR 100 295 -114 2044 195 42 26 chr3 27630049 27630501 -190406657 - MLT1C LTR MaLR 0 467 9 306 0 0 0 chr3 27630956 27630990 -190406168 + (CA)n Simple_repeat Simple_repeat 1 34 0 185 289 93 41 chr3 27632212 27632309 -190404849 - L2 LINE L2 -903 2411 2310 2144 150 3 57 chr3 27632886 27633273 -190403885 - MER47A DNA MER2_type 0 366 1 469 292 83 50 chr3 27634686 27634926 -190402232 - MIR SINE MIR 0 262 15 235 208 38 0 chr3 27634936 27634989 -190402169 + (CATA)n Simple_repeat Simple_repeat 2 56 0 292 307 13 0 chr3 27635329 27635404 -190401754 + MLT1L LTR MaLR 413 488 -127 2226 120 38 14 chr3 27636189 27636555 -190400603 - THE1C LTR MaLR 0 375 1 1489 260 70 24 chr3 27637899 27638412 -190398746 + MLT1F1 LTR MaLR 27 567 0 759 235 71 6 chr3 27638725 27638908 -190398250 - MER63A DNA MER1_type -14 196 2 1003 191 54 33 chr3 27639202 27639443 -190397715 - MLT2B3 LTR ERVL -308 246 1 22311 38 0 0 chr3 27639801 27643299 -190393859 + L1PA4 LINE L1 2646 6144 -11 32 26 0 0 chr3 27643299 27643338 -190393820 + AT_rich Low_complexity Low_complexity 1 39 0 629 224 60 27 chr3 27644102 27644285 -190392873 + L1ME3A LINE L1 5973 6161 -9 216 286 0 88 chr3 27644700 27644791 -190392367 + MIR SINE MIR 20 102 -160 261 282 59 0 chr3 27645247 27645332 -190391826 + MLT1K LTR MaLR 499 588 0 3566 131 24 2 chr3 27645512 27646085 -190391073 + L1PA16 LINE L1 5581 6166 0 544 286 21 87 chr3 27646592 27646833 -190390325 - MIR SINE MIR 0 262 38 1318 184 0 0 chr3 27646843 27647055 -190390103 - AluJb SINE Alu -22 290 79 603 178 9 0 chr3 27648142 27648249 -190388909 - MLT2F LTR ERVL 0 663 556 35562 36 2 1 chr3 27648260 27653386 -190383772 - L1PA3 LINE L1 -3 6152 1024 349 311 68 21 chr3 27653419 27653609 -190383549 + L1M4 LINE L1 3754 3952 -2194 239 221 26 13 chr3 27653735 27653812 -190383346 + L1M4 LINE L1 4108 4185 -1961 29 0 0 0 chr3 27653883 27653912 -190383246 + AT_rich Low_complexity Low_complexity 1 29 0 5878 181 12 10 chr3 27653923 27656064 -190381094 - L1PA16 LINE L1 0 6166 4025 216 188 0 0 chr3 27656101 27656149 -190381009 + (TTAAA)n Simple_repeat Simple_repeat 4 51 0 219 69 0 0 chr3 27656560 27656589 -190380569 + (GA)n Simple_repeat Simple_repeat 2 30 0 1506 172 181 3 chr3 27656617 27656920 -190380238 - Tigger1 DNA MER2_type -1 2417 2061 943 345 7 29 chr3 27656926 27657378 -190379780 + L1M3a LINE L1 11 452 -5503 6755 134 7 13 chr3 27657489 27658324 -190378834 + L1MA2 LINE L1 4839 5666 -638 2072 122 14 0 chr3 27658324 27658611 -190378547 + AluSc SINE Alu 1 291 -18 6755 134 7 13 chr3 27658611 27659247 -190377911 + L1MA2 LINE L1 5666 6304 0 4854 162 28 45 chr3 27659265 27660672 -190376486 + L1MA4 LINE L1 4369 5736 -564 1984 92 26 3 chr3 27660672 27660975 -190376183 + L1MA2 LINE L1 5995 6304 0 4854 162 28 45 chr3 27660975 27661517 -190375641 + L1MA4 LINE L1 5736 6285 -15 12414 144 19 13 chr3 27661519 27663577 -190373581 - Tigger1 DNA MER2_type -332 2086 15 363 302 4 146 chr3 27663653 27663782 -190373376 + MIR SINE MIR 16 89 -173 2119 128 0 0 chr3 27663782 27664078 -190373080 + AluSx SINE Alu 2 297 -15 363 302 4 146 chr3 27664078 27664216 -190372942 + MIR SINE MIR 89 245 -17 7201 38 22 0 chr3 27664408 27665288 -190371870 + L1PA3 LINE L1 5254 6152 -3 4757 184 73 55 chr3 27666105 27667299 -190369859 - Charlie1a DNA MER1_type -1306 1455 229 2179 116 30 48 chr3 27667299 27667510 -190369648 - THE1B LTR MaLR 0 364 160 2135 104 4 0 chr3 27667510 27667813 -190369345 + AluSg SINE Alu 5 308 0 2179 116 30 48 chr3 27667813 27667971 -190369187 - THE1B LTR MaLR -204 160 1 4757 184 73 55 chr3 27667971 27668204 -190368954 - Charlie1a DNA MER1_type -2532 229 2 200 191 0 24 chr3 27668678 27668720 -190368438 - MIR SINE MIR -57 151 111 327 350 75 15 chr3 27668734 27668934 -190368224 - L3 LINE CR1 -9 1568 1357 326 294 103 0 chr3 27668948 27669074 -190368084 - L3 LINE CR1 -549 1028 890 257 321 41 41 chr3 27669227 27669445 -190367713 - L3 LINE CR1 -769 808 591 304 274 74 0 chr3 27669936 27670031 -190367127 + MIR SINE MIR 161 262 0 269 258 0 0 chr3 27670790 27670856 -190366302 + (TTCA)n Simple_repeat Simple_repeat 3 68 0 2484 122 8 16 chr3 27672218 27672596 -190364562 - THE1C LTR MaLR 0 375 1 6788 111 253 34 chr3 27672596 27673892 -190363266 - THE1C-int LTR MaLR 0 1580 1 2319 126 24 16 chr3 27673892 27674264 -190362894 - THE1C LTR MaLR 0 375 1 1587 197 0 48 chr3 27674329 27674685 -190362473 - MER44D DNA MER2_type 0 609 1 287 307 31 51 chr3 27674713 27675006 -190362152 - HAL1 LINE L1 -839 1668 1382 6178 121 40 9 chr3 27675052 27676088 -190361070 - L1MA1 LINE L1 0 7721 6654 2185 133 8 39 chr3 27676090 27676475 -190360683 - THE1C LTR MaLR -2 373 1 5641 128 38 5 chr3 27676475 27677347 -190359811 - THE1C-int LTR MaLR 0 1580 680 1764 143 5 215 chr3 27677370 27678040 -190359118 - L1MA1 LINE L1 -907 6658 6130 * 9579 172 21 13 chr3 27678020 27680635 -190356523 - L1MA1 LINE L1 -1940 5625 2990 4347 227 20 12 chr3 27680632 27681532 -190355626 - L1MA1 LINE L1 -6640 925 19 * 219 36 0 0 chr3 27681808 27681836 -190355322 + (TTA)n Simple_repeat Simple_repeat 3 30 0 12384 27 1 0 chr3 27681836 27684059 -190353099 - L1PA3 LINE L1 -18 6137 3913 9836 29 3 0 chr3 27684059 27685263 -190351895 + L1P LINE L1 2509 3716 -2430 249 290 0 0 chr3 27686610 27686672 -190350486 - L2 LINE L2 -2 3311 3250 587 258 96 18 chr3 27686832 27687089 -190350069 + LTR16A1 LTR ERVL 160 441 -16 241 360 171 21 chr3 27687098 27687337 -190349821 - L2 LINE L2 -33 3280 3006 204 351 211 18 chr3 27687947 27688061 -190349097 + L2 LINE L2 3137 3272 0 1040 180 83 7 chr3 27688163 27688441 -190348717 - MER33 DNA MER1_type 0 324 26 463 165 28 92 chr3 27688647 27688756 -190348402 - MER20 DNA MER1_type -116 103 2 420 359 34 94 chr3 27689569 27689984 -190347174 - L2 LINE L2 0 3272 2883 181 308 26 51 chr3 27691405 27691483 -190345675 - L2 LINE L2 -4 3268 3193 316 250 18 107 chr3 27691768 27691880 -190345278 - MER91B DNA MER1_type 0 190 89 390 244 55 55 chr3 27691898 27692025 -190345133 - MER91B DNA MER1_type -62 128 2 335 294 67 0 chr3 27692184 27692303 -190344855 + Charlie8 DNA MER1_type 126 252 -2165 1095 178 25 0 chr3 27692490 27692687 -190344471 - MER3 DNA MER1_type -4 205 4 682 194 0 8 chr3 27692908 27693042 -190344116 - MLT1D LTR MaLR 0 505 373 12126 67 3 1 chr3 27693043 27694667 -190342491 - L1PA5 LINE L1 -2136 4010 2384 10593 57 3 6 chr3 27694667 27696809 -190340349 + L1PA5 LINE L1 4018 6154 0 1189 219 119 53 chr3 27696840 27697200 -190339958 - MLT1D LTR MaLR -119 386 3 1575 204 120 14 chr3 27698042 27698400 -190338758 + MSTD LTR MaLR 1 396 0 298 382 115 0 chr3 27700113 27700278 -190336880 + MIR3 SINE MIR 23 206 -2 287 333 83 24 chr3 27700433 27700601 -190336557 - MIR SINE MIR -11 251 74 571 317 85 40 chr3 27700769 27701225 -190335933 - L1MC/D LINE L1 -376 5745 5322 3164 164 29 5 chr3 27701583 27702139 -190335019 + LTR24B LTR ERV1 1 569 -7 824 293 19 64 chr3 27702139 27702394 -190334764 + LTR16A1 LTR ERVL 103 339 -118 2053 132 127 18 chr3 27702394 27702780 -190334378 + MSTA LTR MaLR 1 428 0 824 293 19 64 chr3 27702780 27702883 -190334275 + LTR16A1 LTR ERVL 339 445 -12 307 340 87 20 chr3 27704107 27704257 -190332901 + MIR3 SINE MIR 42 201 -7 513 313 31 10 chr3 27706137 27706328 -190330830 - MIR3 SINE MIR -1 207 11 230 310 0 0 chr3 27706317 27706375 -190330783 - L2 LINE L2 -10 3303 3246 * 2455 235 59 21 chr3 27706424 27706917 -190330241 + L1MD2 LINE L1 4381 4921 -1225 2631 36 3 0 chr3 27706917 27707220 -190329938 - AluY SINE Alu -7 304 1 2455 235 59 21 chr3 27707220 27707577 -190329581 + L1MD2 LINE L1 4921 5263 -883 494 106 59 0 chr3 27707579 27707664 -190329494 + L1PA16 LINE L1 6068 6157 -9 2532 105 36 0 chr3 27707681 27708071 -190329087 - L1PA7 LINE L1 -1692 4454 4051 6859 62 8 2 chr3 27708071 27709790 -190327368 + L1PA7 LINE L1 4449 6151 -3 383 126 10 2 chr3 27709835 27709912 -190327246 + L1MD2 LINE L1 5255 5335 -835 5796 239 42 22 chr3 27709922 27711574 -190325584 + L1 LINE L1 835 2453 -5033 1842 137 71 14 chr3 27711574 27711925 -190325233 - THE1C LTR MaLR -4 371 1 9553 133 10 43 chr3 27711925 27712132 -190325026 - THE1C-int LTR MaLR 0 1580 1368 1432 101 187 82 chr3 27712132 27712399 -190324759 + AluSx SINE Alu 1 295 -17 9553 133 10 43 chr3 27712399 27713822 -190323336 - THE1C-int LTR MaLR -212 1368 4 1832 167 44 19 chr3 27713825 27714191 -190322967 - THE1C LTR MaLR 0 375 1 5796 239 42 22 chr3 27714191 27714438 -190322720 + L1 LINE L1 2454 2685 -4801 3660 226 40 28 chr3 27714430 27716085 -190321073 + L1 LINE L1 2986 4670 -2895 * 1438 177 87 0 chr3 27716085 27716362 -190320796 + MSTC LTR MaLR 1 301 -127 2318 117 14 8 chr3 27716362 27716721 -190320437 + L1PA11 LINE L1 5814 6174 0 2051 196 11 13 chr3 27716923 27717372 -190319786 + L1MD2 LINE L1 5482 5929 -430 268 123 68 82 chr3 27717367 27717440 -190319718 + L1MC/D LINE L1 5822 5893 -466 * 1096 186 14 5 chr3 27717503 27717724 -190319434 - L1MD2 LINE L1 -471 5888 5666 661 248 155 93 chr3 27717746 27718082 -190319076 + HAL1 LINE L1 636 950 -1557 411 56 0 0 chr3 27718082 27718136 -190319022 + MADE1 DNA Mariner 1 54 -26 661 248 155 93 chr3 27718136 27718372 -190318786 + HAL1 LINE L1 950 1300 -1207 894 143 0 0 chr3 27718389 27718522 -190318636 + FLAM_C SINE Alu 1 133 0 2210 117 0 3 chr3 27718889 27719187 -190317971 - AluSq SINE Alu -16 297 1 210 359 111 17 chr3 27719914 27720031 -190317127 - L2 LINE L2 -5 3267 3140 2758 206 1 19 chr3 27721956 27722536 -190314622 + L1 LINE L1 5811 6379 -1186 1768 164 40 32 chr3 27722536 27722908 -190314250 + THE1C LTR MaLR 1 375 0 2758 206 1 19 chr3 27722908 27723005 -190314153 + L1 LINE L1 6379 6476 -1089 4575 107 29 21 chr3 27723027 27723781 -190313377 + L1PA16 LINE L1 5407 6166 0 274 78 20 20 chr3 27724206 27724257 -190312901 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 182 37 37 0 chr3 27724314 27724341 -190312817 + (CA)n Simple_repeat Simple_repeat 2 29 0 300 212 0 15 chr3 27724349 27724415 -190312743 + L1MC4 LINE L1 6614 6678 -1364 374 285 95 92 chr3 27725124 27725535 -190311623 + MLT1H LTR MaLR 136 547 -2 14215 151 106 76 chr3 27725743 27729022 -190308136 + L1M1 LINE L1 8 3382 -4183 1806 188 3 0 chr3 27729034 27729386 -190307772 + L1M1 LINE L1 5201 5553 -2012 3850 169 42 44 chr3 27729387 27730178 -190306980 - MER52A LTR ERV1 0 1755 967 2833 155 10 15 chr3 27730211 27730941 -190306217 + L1M1 LINE L1 6182 6905 -743 2437 150 46 17 chr3 27730957 27731371 -190305787 + MSTB LTR MaLR 1 426 0 956 173 35 0 chr3 27731371 27731568 -190305590 - MLT1A2-int LTR MaLR -909 462 259 587 128 55 0 chr3 27731558 27731667 -190305491 - MLT1A2-int LTR MaLR -1256 115 1 * 1449 231 3 6 chr3 27731667 27731987 -190305171 - MLT1A2 LTR MaLR 0 374 56 1794 185 11 0 chr3 27733208 27733495 -190303663 + AluJb SINE Alu 1 290 -22 24 32 0 0 chr3 27733495 27733526 -190303632 + AT_rich Low_complexity Low_complexity 1 31 0 186 118 0 0 chr3 27733807 27733841 -190303317 + (TATG)n Simple_repeat Simple_repeat 3 36 0 32984 100 11 27 chr3 27734682 27740926 -190296232 - L1PA7 LINE L1 -2 6152 12 553 199 59 128 chr3 27740937 27741168 -190295990 - L1MC5 LINE L1 -308 7653 7458 2346 126 25 3 chr3 27741168 27741524 -190295634 - THE1B LTR MaLR 0 364 1 553 199 59 128 chr3 27741524 27741684 -190295474 - L1MC5 LINE L1 -503 7458 7289 2247 269 62 28 chr3 27742208 27744620 -190292538 + L1MB1 LINE L1 2 2700 -3270 1028 166 43 0 chr3 27744621 27744784 -190292374 - AluSg/x SINE Alu -9 303 134 1264 223 86 18 chr3 27744784 27745330 -190291828 + L1MB1 LINE L1 2692 3274 -2696 4050 71 13 4 chr3 27745336 27745874 -190291284 - L1PA6 LINE L1 -2 6152 5610 12984 173 53 26 chr3 27745936 27750969 -190286189 + L1PB1 LINE L1 6 5263 -1604 2153 116 14 0 chr3 27750969 27751262 -190285896 + AluSx SINE Alu 1 297 -15 12984 173 53 26 chr3 27751262 27752912 -190284246 + L1PB1 LINE L1 5263 6867 0 6919 179 36 17 chr3 27752923 27753746 -190283412 + L1MB1 LINE L1 3295 4100 -1892 2016 105 11 0 chr3 27753746 27754057 -190283101 - AluY SINE Alu 0 314 1 6919 179 36 17 chr3 27754057 27754940 -190282218 + L1MB1 LINE L1 4100 4964 -1028 2009 189 53 19 chr3 27754940 27755352 -190281806 + MSTB LTR MaLR 1 426 0 6919 179 36 17 chr3 27755352 27756261 -190280897 + L1MB1 LINE L1 4964 5991 -1 237 306 139 0 chr3 27756442 27756550 -190280608 - MIR SINE MIR -56 206 84 300 276 0 13 chr3 27757334 27757410 -190279748 + (TTCA)n Simple_repeat Simple_repeat 3 77 0 198 239 0 0 chr3 27757574 27757620 -190279538 + L2 LINE L2 3262 3307 -6 417 316 90 19 chr3 27758002 27758214 -190278944 + MIR SINE MIR 32 258 -4 1027 232 80 49 chr3 27759694 27760143 -190277015 - MER4C LTR ERV1 -2 463 1 3352 111 148 124 chr3 27760400 27761772 -190275386 + pTR5 LTR ERV1 743 2606 0 1952 140 27 0 chr3 27762406 27762699 -190274459 - AluSx SINE Alu -11 301 1 232 252 155 39 chr3 27764407 27764510 -190272648 + L2 LINE L2 3199 3313 0 667 233 94 0 chr3 27764698 27764857 -190272301 + MER5B DNA MER1_type 5 178 0 263 284 101 47 chr3 27764929 27765098 -190272060 + MER5B DNA MER1_type 1 178 0 3418 64 0 11 chr3 27765101 27765552 -190271606 - L1PA7 LINE L1 0 6154 5709 982 89 34 27 chr3 27765656 27765802 -190271356 - L1PA11 LINE L1 -1 6173 6027 2051 148 3 0 chr3 27766656 27766966 -190270192 + AluSx SINE Alu 1 311 -1 385 283 63 44 chr3 27767548 27767599 -190269559 - MIR SINE MIR -55 207 158 1394 214 90 45 chr3 27767599 27767978 -190269180 - MSTD LTR MaLR 0 396 1 385 283 63 44 chr3 27767978 27768085 -190269073 - MIR SINE MIR -104 158 46 201 372 48 48 chr3 27768596 27768741 -190268417 - L2 LINE L2 -10 3262 3118 599 346 91 34 chr3 27769244 27769594 -190267564 - LTR16C LTR ERVL -2 489 120 552 373 79 41 chr3 27770603 27771527 -190265631 - L2 LINE L2 0 3272 2316 239 333 25 25 chr3 27771527 27771647 -190265511 - MLT1H LTR MaLR 0 549 430 537 220 40 10 chr3 27771808 27771934 -190265224 - MLT1H LTR MaLR -197 232 98 322 337 84 42 chr3 27772020 27772352 -190264806 - L2 LINE L2 -991 2323 1978 503 348 114 4 chr3 27772379 27772606 -190264552 - MIR SINE MIR -10 252 1 290 366 9 11 chr3 27772689 27772799 -190264359 - MIR SINE MIR -92 116 6 21 71 0 0 chr3 27773376 27773418 -190263740 + AT_rich Low_complexity Low_complexity 1 42 0 189 132 0 0 chr3 27773494 27773532 -190263626 + (A)n Simple_repeat Simple_repeat 1 38 0 1222 181 112 0 chr3 27773566 27773825 -190263333 - AluJo SINE Alu -14 288 1 24 0 0 0 chr3 27773925 27773949 -190263209 + AT_rich Low_complexity Low_complexity 1 24 0 210 328 86 0 chr3 27774442 27774500 -190262658 + L2 LINE L2 3208 3270 -43 532 356 46 9 chr3 27774586 27774805 -190262353 - MIR SINE MIR -1 261 35 24 53 0 0 chr3 27776055 27776093 -190261065 + AT_rich Low_complexity Low_complexity 1 38 0 429 276 60 22 chr3 27776157 27776291 -190260867 + L2 LINE L2 3169 3307 -6 180 345 216 7 chr3 27776619 27776767 -190260391 + MIR SINE MIR 10 188 -74 279 133 0 0 chr3 27776768 27776813 -190260345 + (TA)n Simple_repeat Simple_repeat 2 46 0 24 0 0 0 chr3 27776826 27776850 -190260308 + AT_rich Low_complexity Low_complexity 1 24 0 1648 263 107 28 chr3 27776912 27777483 -190259675 + MLT2F LTR ERVL 1 616 -47 231 146 0 0 chr3 27777792 27777833 -190259325 + (TCCC)n Simple_repeat Simple_repeat 2 42 0 252 0 0 0 chr3 27778915 27778943 -190258215 + (TA)n Simple_repeat Simple_repeat 2 29 0 3096 171 54 0 chr3 27778944 27779482 -190257676 - MER6A DNA MER2_type 0 605 39 602 171 39 8 chr3 27779746 27779875 -190257283 - L1 LINE L1 -2192 3954 3822 2634 32 3 0 chr3 27779959 27780270 -190256888 - L1PA6 LINE L1 -234 5920 5609 6240 52 4 0 chr3 27780942 27781713 -190255445 - L1PA6 LINE L1 -1 6153 5380 456 309 195 15 chr3 27781713 27782056 -190255102 - L2 LINE L2 -1518 1796 1392 1961 129 7 3 chr3 27782062 27782371 -190254787 + L1P4 LINE L1 5351 5660 -506 558 298 20 45 chr3 27782510 27782708 -190254450 - L2 LINE L2 -19 3294 3102 24 0 0 0 chr3 27784885 27784909 -190252249 + AT_rich Low_complexity Low_complexity 1 24 0 4842 163 30 14 chr3 27784922 27785926 -190251232 + L1MB1 LINE L1 4781 5819 -349 349 36 36 0 chr3 27785926 27785981 -190251177 + (TG)n Simple_repeat Simple_repeat 1 57 0 4842 163 30 14 chr3 27785981 27786336 -190250822 + L1MB1 LINE L1 5819 6167 -1 24 0 0 0 chr3 27786348 27786372 -190250786 + AT_rich Low_complexity Low_complexity 1 24 0 2153 98 0 0 chr3 27786449 27786725 -190250433 + AluSx SINE Alu 1 276 -36 2143 125 56 19 chr3 27786826 27787185 -190249973 + L1PA16 LINE L1 5789 6160 -6 225 0 0 0 chr3 27787714 27787739 -190249419 + (CA)n Simple_repeat Simple_repeat 2 26 0 1386 274 104 10 chr3 27787902 27788315 -190248843 + MLT1G LTR MaLR 135 586 -4 1450 169 44 34 chr3 27788402 27788697 -190248461 - AluJb SINE Alu -14 298 1 512 210 178 25 chr3 27789512 27789793 -190247365 + L1MC5 LINE L1 7538 7861 -100 278 280 72 0 chr3 27790084 27790209 -190246949 + L1ME4a LINE L1 5926 6059 -62 1749 237 133 18 chr3 27791214 27791703 -190245455 + MLT1E LTR MaLR 32 576 -17 533 322 7 56 chr3 27792114 27792373 -190244785 - MIR SINE MIR -6 256 6 454 225 248 0 chr3 27792660 27792789 -190244369 + MER5A DNA MER1_type 28 188 -1 30 0 0 0 chr3 27792848 27792878 -190244280 + AT_rich Low_complexity Low_complexity 1 30 0 345 78 0 68 chr3 27793867 27793970 -190243188 + (TAA)n Simple_repeat Simple_repeat 3 98 0 200 264 97 14 chr3 27793973 27794045 -190243113 + L2 LINE L2 3236 3313 0 287 256 60 98 chr3 27794086 27794219 -190242939 + L2 LINE L2 3145 3272 0 392 336 7 15 chr3 27794548 27794685 -190242473 + MIR SINE MIR 121 256 -6 1457 323 116 8 chr3 27795036 27795805 -190241353 + L2 LINE L2 2119 2970 -344 196 235 39 0 chr3 27795919 27795970 -190241188 + L2 LINE L2 3241 3293 -20 730 177 20 41 chr3 27796620 27796767 -190240391 + AluJb SINE Alu 134 277 -35 504 93 0 0 chr3 27796776 27796851 -190240307 + (GGAA)n Simple_repeat Simple_repeat 2 76 0 230 284 125 0 chr3 27797267 27797355 -190239803 + MIR3 SINE MIR 87 185 -23 326 343 28 33 chr3 27797498 27797711 -190239447 - L2 LINE L2 -249 3023 2812 2181 106 0 3 chr3 27797931 27798223 -190238935 - AluSc SINE Alu -18 291 1 732 152 33 2 chr3 27798334 27798467 -190238691 + L1MB8 LINE L1 5516 5650 -524 2814 133 7 0 chr3 27798467 27798889 -190238269 + MER57B LTR ERV1 1 425 -9 3761 155 44 17 chr3 27798901 27799558 -190237600 + MER57B-int LTR ERV1 1 675 -6862 3428 144 53 13 chr3 27799552 27800102 -190237056 + MER57B-int LTR ERV1 288 859 -5087 * 17309 170 60 53 chr3 27800140 27804312 -190232846 + MER57B-int LTR ERV1 3129 7329 -487 768 138 24 0 chr3 27804312 27804435 -190232723 + LTR54B LTR ERV1 3 128 -370 1570 87 121 4 chr3 27804435 27804666 -190232492 + MER57B-int LTR ERV1 7272 7529 -8 2433 121 44 37 chr3 27804674 27805105 -190232053 + MER57B LTR ERV1 1 434 0 304 154 0 0 chr3 27805105 27805150 -190232008 + L1MB8 LINE L1 5644 5691 -551 2098 149 15 27 chr3 27805151 27805553 -190231605 + L1MB8 LINE L1 5782 6178 0 2473 53 0 3 chr3 27805977 27806279 -190230879 + AluY SINE Alu 1 301 -10 192 179 0 0 chr3 27806323 27806362 -190230796 + (GTTTG)n Simple_repeat Simple_repeat 2 40 0 222 37 0 0 chr3 27806491 27806518 -190230640 + (GCCTG)n Simple_repeat Simple_repeat 4 30 0 478 311 49 0 chr3 27807579 27807743 -190229415 - MIR SINE MIR 0 262 91 194 250 28 14 chr3 27807935 27808007 -190229151 + MIR SINE MIR 188 260 -2 * 327 260 115 0 chr3 27807996 27808092 -190229066 - MIR SINE MIR -99 163 57 202 258 194 0 chr3 27809058 27809151 -190228007 + MIR SINE MIR 92 202 -60 204 299 75 15 chr3 27809211 27809278 -190227880 + L2 LINE L2 3035 3105 -167 651 238 62 66 chr3 27809347 27809743 -190227415 + MLT2B3 LTR ERVL 71 322 -169 1314 276 32 29 chr3 27810396 27810806 -190226352 + LTR16A LTR ERVL 40 450 0 189 246 0 77 chr3 27810810 27810875 -190226283 + L2 LINE L2 3203 3262 -10 353 226 48 0 chr3 27811235 27811319 -190225839 + MLT2E LTR ERVL 38 125 -503 379 218 0 170 chr3 27811975 27812008 -190225150 + L2 LINE L2 3124 3161 -152 1440 145 76 0 chr3 27812008 27812298 -190224860 + L1MA8 LINE L1 5976 6287 -4 379 218 0 170 chr3 27812298 27812493 -190224665 + L2 LINE L2 3161 3313 0 440 293 34 0 chr3 27812860 27813068 -190224090 - L1M4 LINE L1 -1524 4622 4408 1403 248 75 100 chr3 27813431 27814033 -190223125 + MLT1G LTR MaLR 9 590 0 4453 98 8 22 chr3 27815309 27815952 -190221206 + MER51A LTR ERV1 1 634 0 279 284 140 25 chr3 27816075 27816277 -190220881 + MLT1H LTR MaLR 1 300 -249 1748 188 0 0 chr3 27816338 27816620 -190220538 + AluJo SINE Alu 1 282 -30 221 306 94 12 chr3 27816645 27816730 -190220428 + MIR SINE MIR 100 191 -71 247 286 174 10 chr3 27816756 27816854 -190220304 - L2 LINE L2 -20 3293 3180 981 199 10 0 chr3 27817240 27817441 -190219717 + MER3 DNA MER1_type 6 208 -1 219 36 0 0 chr3 27818343 27818371 -190218787 + (CAG)n Simple_repeat Simple_repeat 1 28 0 338 381 12 12 chr3 27820815 27820975 -190216183 + MIR3 SINE MIR 29 188 -20 1462 311 180 22 chr3 27821376 27822503 -190214655 - L2 LINE L2 -229 3084 1782 21 0 0 0 chr3 27822509 27822530 -190214628 + AT_rich Low_complexity Low_complexity 1 21 0 865 289 142 4 chr3 27822621 27823078 -190214080 - L1MC4a LINE L1 -1815 5993 5474 573 191 128 0 chr3 27823074 27823215 -190213943 - L1PA16 LINE L1 -3 6163 6005 * 239 321 57 30 chr3 27823434 27823699 -190213459 - L1M2 LINE L1 -5782 1067 796 358 297 150 60 chr3 27823766 27824099 -190213059 - L1M2 LINE L1 -6018 831 469 546 287 99 18 chr3 27824188 27824571 -190212587 - L1PA12 LINE L1 -7166 415 2 1428 173 69 36 chr3 27824841 27825118 -190212040 + AluJo SINE Alu 6 291 -21 22 35 0 0 chr3 27825131 27825160 -190211998 + AT_rich Low_complexity Low_complexity 1 29 0 348 258 0 0 chr3 27825545 27825634 -190211524 + L1MC/D LINE L1 5688 5776 -583 612 281 68 29 chr3 27825827 27826211 -190210947 - L1MEc LINE L1 -3905 2491 2093 757 148 0 0 chr3 27826253 27826375 -190210783 - L1 LINE L1 -1939 4207 4086 10466 24 8 0 chr3 27826376 27828108 -190209050 + L1PA4 LINE L1 4091 5832 -323 567 200 179 7 chr3 27828211 27828351 -190208807 + MER5A DNA MER1_type 26 189 0 446 246 35 9 chr3 27828641 27828755 -190208403 + MIR SINE MIR 92 208 -54 2412 136 47 2 chr3 27829007 27829413 -190207745 + MSTA LTR MaLR 3 426 -2 275 309 57 0 chr3 27829518 27829641 -190207517 - L2 LINE L2 -1037 2277 2148 21 57 0 0 chr3 27830384 27830419 -190206739 + AT_rich Low_complexity Low_complexity 1 35 0 230 341 155 31 chr3 27830626 27831040 -190206118 + L2 LINE L2 2153 2617 -697 571 256 12 12 chr3 27831070 27831230 -190205928 + MER69A DNA AcHobo 3 162 -15 236 324 28 0 chr3 27831699 27831770 -190205388 + MER58A DNA MER1_type 1 73 -34 860 187 23 6 chr3 27831791 27831962 -190205196 + MER58A DNA MER1_type 51 224 0 653 247 19 39 chr3 27832664 27832923 -190204235 - L1MC/D LINE L1 -2300 5508 5255 16420 40 2 0 chr3 27834700 27837468 -190199690 + L1PA4 LINE L1 3382 6153 -2 848 204 240 11 chr3 27838091 27838366 -190198792 - MER58B DNA MER1_type -3 338 1 687 138 9 0 chr3 27838521 27838630 -190198528 - L1PB3 LINE L1 -1 6153 6044 580 103 11 0 chr3 27838630 27838717 -190198441 - MSTA LTR MaLR -335 93 6 2169 267 46 30 chr3 27838742 27839614 -190197544 - L1PBa LINE L1 -5801 1062 177 2148 125 16 0 chr3 27840529 27840833 -190196325 + AluSq SINE Alu 1 309 -4 21 36 0 0 chr3 27840978 27841006 -190196152 + AT_rich Low_complexity Low_complexity 1 28 0 688 149 0 57 chr3 27841629 27841747 -190195411 + L1MA3 LINE L1 6173 6296 -9 2675 96 3 0 chr3 27841747 27842101 -190195057 + THE1A LTR MaLR 1 355 0 11308 93 13 11 chr3 27842101 27842539 -190194619 + THE1A-int LTR MaLR 1 437 -1143 2283 88 0 0 chr3 27842539 27842886 -190194272 + AluY SINE Alu 1 347 0 11308 93 13 11 chr3 27842886 27844023 -190193135 + THE1A-int LTR MaLR 437 1580 0 2671 96 6 0 chr3 27844023 27844376 -190192782 + THE1A LTR MaLR 1 355 0 688 149 0 57 chr3 27844376 27844396 -190192762 + L1MA3 LINE L1 6293 6305 0 755 54 0 0 chr3 27844465 27844557 -190192601 - L1PA5 LINE L1 -8 6146 6055 7564 34 3 2 chr3 27844557 27845545 -190191613 + L1P LINE L1 2794 3782 -2364 186 133 0 0 chr3 27846000 27846030 -190191128 + (T)n Simple_repeat Simple_repeat 1 30 0 2905 234 47 15 chr3 27846190 27847138 -190190020 - L1ME1 LINE L1 -4 6162 5191 583 268 153 0 chr3 27847333 27847490 -190189668 - MER5A DNA MER1_type 0 189 9 499 150 0 0 chr3 27847736 27847816 -190189342 - L1MC1 LINE L1 -8 6325 6246 5200 132 32 20 chr3 27848214 27848272 -190188886 + L1MA4 LINE L1 5314 5370 -930 1629 169 16 36 chr3 27848272 27848579 -190188579 + AluJb SINE Alu 1 301 -11 5200 132 32 20 chr3 27848579 27849484 -190187674 + L1MA4 LINE L1 5370 6289 -11 26 0 0 0 chr3 27849484 27849510 -190187648 + AT_rich Low_complexity Low_complexity 1 26 0 309 230 22 19 chr3 27849805 27849914 -190187244 + MLT1I LTR MaLR 68 138 -271 202 390 89 12 chr3 27850791 27850960 -190186198 - L2 LINE L2 -29 3243 3062 251 314 160 26 chr3 27851039 27851233 -190185925 + MIR SINE MIR 40 259 -3 1571 203 0 17 chr3 27851691 27851987 -190185171 - AluJo SINE Alu -21 291 1 514 278 116 20 chr3 27853157 27853630 -190183528 + L1MEd LINE L1 1036 1493 -4831 826 127 0 0 chr3 27853665 27853783 -190183375 + FLAM_C SINE Alu 1 118 -15 33 0 0 0 chr3 27853783 27853816 -190183342 + AT_rich Low_complexity Low_complexity 1 33 0 1122 262 125 5 chr3 27853820 27854244 -190182914 + L1MC4a LINE L1 5463 5937 -1871 320 298 53 0 chr3 27854343 27854457 -190182701 + L1MC4a LINE L1 6046 6165 -1643 868 221 172 48 chr3 27854457 27855037 -190182121 + L1MC5 LINE L1 6840 7491 -470 745 160 6 6 chr3 27855039 27855208 -190181950 + GA-rich Low_complexity Low_complexity 4 172 0 497 221 104 59 chr3 27855400 27855689 -190181469 + L1MC5 LINE L1 7612 7913 -48 335 203 169 45 chr3 27855759 27855983 -190181175 + L1MEd LINE L1 1704 1893 -4533 210 209 45 15 chr3 27856007 27856074 -190181084 + (TAAA)n Simple_repeat Simple_repeat 2 70 0 226 0 0 0 chr3 27856078 27856103 -190181055 + (TTTG)n Simple_repeat Simple_repeat 2 100 0 1449 169 42 0 chr3 27856103 27856340 -190180818 - AluJb SINE Alu -29 283 37 25 31 0 0 chr3 27856350 27856382 -190180776 + AT_rich Low_complexity Low_complexity 1 32 0 2979 223 90 22 chr3 27856546 27857193 -190179965 + L1MEd LINE L1 2342 2943 -3483 1645 212 21 16 chr3 27857193 27857565 -190179593 + MLT1A2 LTR MaLR 1 374 0 2979 223 90 22 chr3 27857565 27858222 -190178936 + L1MEd LINE L1 2943 3691 -2735 524 276 99 0 chr3 27858235 27858387 -190178771 + MLT1G1 LTR MaLR 429 595 0 808 272 80 23 chr3 27858514 27858655 -190178503 + L1M4 LINE L1 2801 2933 -3213 1910 123 50 41 chr3 27858655 27858995 -190178163 - MER61A LTR ERV1 0 343 1 808 272 80 23 chr3 27858995 27859537 -190177621 + L1M4 LINE L1 2933 3523 -2623 6589 176 9 40 chr3 27859537 27861543 -190175615 + L1PA16 LINE L1 5 1840 -5009 6199 177 56 16 chr3 27861545 27863201 -190173957 + L1PA16 LINE L1 4342 6108 -761 2017 135 3 3 chr3 27863201 27863504 -190173654 + AluSx SINE Alu 1 303 -9 6199 177 56 16 chr3 27863504 27864299 -190172859 + L1PA16 LINE L1 6108 6869 0 750 249 34 55 chr3 27864298 27864716 -190172442 + L1M4 LINE L1 3510 3918 -2228 * 1640 222 65 34 chr3 27864728 27865206 -190171952 + MLT1D LTR MaLR 1 493 -12 1301 210 41 4 chr3 27865341 27865733 -190171425 - LTR48 LTR ERV1 -48 739 138 263 167 0 0 chr3 27865779 27865821 -190171337 - LTR48B LTR ERV1 -602 42 1 322 241 68 30 chr3 27865849 27865982 -190171176 + L1M4 LINE L1 4032 4169 -1977 412 206 64 43 chr3 27866100 27866241 -190170917 + L1ME3A LINE L1 6020 6163 -7 447 306 155 18 chr3 27866279 27866498 -190170660 + MIR SINE MIR 11 259 -3 342 293 48 52 chr3 27866684 27866947 -190170211 + L1MEd LINE L1 919 1182 -1308 1540 201 3 7 chr3 27866947 27867235 -190169923 - AluJo SINE Alu -25 287 1 342 293 48 52 chr3 27867235 27867467 -190169691 + L1MEd LINE L1 1182 1414 -1076 645 244 91 35 chr3 27867467 27867664 -190169494 - MER63A DNA MER1_type -2 208 1 342 293 48 52 chr3 27867664 27867831 -190169327 + L1MEd LINE L1 1414 1649 -841 1664 158 50 7 chr3 27868364 27868792 -190168366 + MER61D LTR ERV1 1 501 0 2144 112 3 0 chr3 27869305 27869591 -190167567 - AluSx SINE Alu -15 297 11 463 138 32 81 chr3 27869767 27869890 -190167268 - MER94 DNA DNA -16 118 2 400 348 58 5 chr3 27869949 27870185 -190166973 - MIR SINE MIR -15 247 2 630 240 14 1 chr3 27870348 27870497 -190166661 + MLT1H LTR MaLR 17 214 -335 2225 104 3 3 chr3 27870498 27870795 -190166363 + AluSg SINE Alu 1 297 -13 961 191 40 35 chr3 27870850 27871078 -190166080 + AluJb SINE Alu 85 313 0 575 243 49 25 chr3 27871207 27871414 -190165744 + MLT1H LTR MaLR 344 549 0 772 161 0 0 chr3 27871728 27871846 -190165312 + FLAM_C SINE Alu 1 118 -15 39 22 0 0 chr3 27871846 27871892 -190165266 + AT_rich Low_complexity Low_complexity 1 46 0 198 171 0 0 chr3 27871936 27871977 -190165181 + (TG)n Simple_repeat Simple_repeat 2 42 0 249 235 0 0 chr3 27872407 27872458 -190164700 + L3b LINE CR1 1108 1158 -425 261 293 58 35 chr3 27872976 27873186 -190163972 - MIR3 SINE MIR -7 255 6 656 302 72 0 chr3 27873328 27873563 -190163595 + MIR SINE MIR 11 262 0 526 182 35 98 chr3 27873608 27873811 -190163347 + L1MC5 LINE L1 7724 7913 -48 1864 160 7 3 chr3 27875211 27875505 -190161653 + AluJb SINE Alu 1 295 -17 2047 118 0 56 chr3 27875723 27876046 -190161112 + AluSg SINE Alu 1 305 -5 872 198 53 135 chr3 27876479 27876878 -190160280 + MLT1A2 LTR MaLR 12 369 -5 221 275 43 29 chr3 27876901 27876970 -190160188 + L2 LINE L2 3200 3269 -3 1997 238 30 5 chr3 27877565 27878124 -190159034 + L1MC4a LINE L1 7189 7761 -47 2065 141 13 107 chr3 27878139 27878316 -190158842 - L1MA9 LINE L1 -30 6282 6090 1762 158 38 0 chr3 27878316 27878607 -190158551 + AluJb SINE Alu 1 302 -10 2065 141 13 107 chr3 27878607 27878953 -190158205 - L1MA9 LINE L1 -222 6090 5808 1978 214 26 15 chr3 27878951 27879532 -190157626 - L1M2c LINE L1 -4653 2384 1802 * 400 289 45 26 chr3 27880143 27880377 -190156781 - L1M2c LINE L1 -6024 1013 7 26 0 0 0 chr3 27880423 27880449 -190156709 + AT_rich Low_complexity Low_complexity 1 26 0 223 357 94 62 chr3 27880572 27880796 -190156362 + MIR SINE MIR 20 250 -12 32 43 0 0 chr3 27881434 27881480 -190155678 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr3 27882465 27882487 -190154671 + AT_rich Low_complexity Low_complexity 1 22 0 230 191 0 0 chr3 27882524 27882566 -190154592 + 5S rRNA rRNA 1 42 -79 1074 213 137 15 chr3 27882711 27882928 -190154230 - L1ME3 LINE L1 -79 6083 5894 2301 97 3 0 chr3 27882928 27883226 -190153932 - AluSg SINE Alu -11 299 1 1074 213 137 15 chr3 27883226 27883351 -190153807 - L1ME3 LINE L1 -268 5894 5699 2135 99 3 3 chr3 27883635 27883927 -190153231 + AluSp SINE Alu 1 292 -21 225 232 32 21 chr3 27883927 27884022 -190153136 + L1MC5 LINE L1 7822 7917 -44 1395 171 96 11 chr3 27884280 27884561 -190152597 + AluSx SINE Alu 1 305 -7 2831 142 50 21 chr3 27884766 27885289 -190151869 - MER21A LTR ERV1 -19 912 375 369 172 39 8 chr3 27885461 27885589 -190151569 + (TA)n Simple_repeat Simple_repeat 1 132 0 451 229 47 41 chr3 27885749 27885919 -190151239 - MER112 DNA MER1_type -83 177 7 730 109 0 70 chr3 27886547 27886675 -190150483 - L1PA13 LINE L1 -11 6152 6034 1243 206 76 7 chr3 27886789 27887196 -190149962 + Charlie4a DNA MER1_type 60 494 -14 1695 178 0 14 chr3 27887440 27887762 -190149396 + AluJb SINE Alu 1 318 0 995 117 9 61 chr3 27887811 27887911 -190149247 - L1MA4 LINE L1 0 6300 6215 2273 115 0 0 chr3 27887911 27888207 -190148951 + AluSx SINE Alu 1 296 -16 995 117 9 61 chr3 27888207 27888319 -190148839 - L1MA4 LINE L1 -85 6215 6099 1713 139 35 0 chr3 27888378 27888688 -190148470 - L1MA4 LINE L1 -191 6109 5789 * 12262 166 22 28 chr3 27888685 27891381 -190145777 - L1MA4 LINE L1 -838 5308 2628 281 344 65 47 chr3 27891903 27892264 -190144894 + L2 LINE L2 2660 3025 -247 10872 171 18 69 chr3 27892444 27895662 -190141496 + L1PA12 LINE L1 1400 4779 -2805 520 146 12 0 chr3 27895662 27895744 -190141414 + AluSc SINE Alu 44 126 -183 10872 171 18 69 chr3 27895744 27895807 -190141351 + L1PA12 LINE L1 4779 4844 -2740 2301 96 7 7 chr3 27895807 27896110 -190141048 + AluSp SINE Alu 1 303 -10 1010 107 0 0 chr3 27896110 27896241 -190140917 + AluSc SINE Alu 132 262 -47 180 0 0 0 chr3 27896241 27896261 -190140897 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 10872 171 18 69 chr3 27896261 27896747 -190140411 + L1PA12 LINE L1 4841 5143 -2441 1269 185 24 31 chr3 27896777 27897069 -190140089 + SVA Other Other 432 721 -665 1200 148 5 0 chr3 27897178 27897394 -190139764 + L1PA12 LINE L1 5143 5359 -2225 247 191 0 0 chr3 27897391 27897438 -190139720 + L1MA5A LINE L1 5722 5768 -529 * 11384 99 12 1 chr3 27897493 27899939 -190137219 - L1PA7 LINE L1 0 6469 3996 4651 83 0 3 chr3 27899939 27900547 -190136611 - L1PA7 LINE L1 0 6154 5542 16077 111 41 19 chr3 27900548 27903672 -190133486 - L1PA7 LINE L1 -2456 4005 751 692 111 0 34 chr3 27903702 27903819 -190133339 + L1MA5A LINE L1 5782 5894 -403 1529 224 14 0 chr3 27903848 27904129 -190133029 + AluJo SINE Alu 1 285 -27 294 73 0 0 chr3 27904146 27904187 -190132971 + (CAT)n Simple_repeat Simple_repeat 2 42 0 2137 150 28 2 chr3 27904190 27904589 -190132569 + L1MA5A LINE L1 5886 6294 -3 224 283 11 0 chr3 27904590 27904682 -190132476 + (TATAA)n Simple_repeat Simple_repeat 1 93 0 6022 123 71 9 chr3 27904688 27904789 -190132369 + L1MC3 LINE L1 1854 1947 -6554 1972 128 31 7 chr3 27904789 27905078 -190132080 + AluSx SINE Alu 1 296 -16 6022 123 71 9 chr3 27905078 27906225 -190130933 + L1MC3 LINE L1 1947 6571 -1930 23 33 0 0 chr3 27906270 27906300 -190130858 + AT_rich Low_complexity Low_complexity 1 30 0 12856 184 23 28 chr3 27906300 27909582 -190127576 + L1PB2 LINE L1 2362 5622 -529 7884 42 0 1 chr3 27909582 27911207 -190125951 + L1PA5 LINE L1 4527 6150 -4 12856 184 23 28 chr3 27911207 27911620 -190125538 + L1PB2 LINE L1 5622 6035 -116 * 43401 36 21 1 chr3 27911617 27917647 -190119511 + L1PA2 LINE L1 1 6155 0 947 83 15 8 chr3 27917647 27917779 -190119379 + L1PB2 LINE L1 6018 6151 0 248 301 96 64 chr3 27917853 27918198 -190118960 - L2 LINE L2 -1709 1605 1250 28 0 0 0 chr3 27918402 27918430 -190118728 + AT_rich Low_complexity Low_complexity 1 28 0 873 141 147 0 chr3 27918432 27918616 -190118542 + L1MC3 LINE L1 7575 7785 0 2791 96 6 0 chr3 27918710 27919063 -190118095 - THE1A LTR MaLR 0 355 1 11998 80 6 16 chr3 27919063 27920097 -190117061 - THE1A-int LTR MaLR 0 1580 566 5483 40 2 2 chr3 27920097 27920744 -190116414 + L1PA5 LINE L1 5515 6161 0 11998 80 6 16 chr3 27920744 27921301 -190115857 - THE1A-int LTR MaLR -1014 566 5 3254 69 64 7 chr3 27921304 27921345 -190115813 - MLT2A1 LTR ERVL 0 444 407 498 33 0 0 chr3 27921345 27921405 -190115753 + (TAGA)n Simple_repeat Simple_repeat 4 63 0 3254 69 64 7 chr3 27921405 27921783 -190115375 - MLT2A1 LTR ERVL -37 407 1 597 222 176 0 chr3 27921840 27921993 -190115165 + MER5A DNA MER1_type 9 188 -1 228 35 0 0 chr3 27923612 27923641 -190113517 + (TGGA)n Simple_repeat Simple_repeat 3 31 0 2212 286 162 17 chr3 27923841 27924799 -190112359 + L2 LINE L2 634 1806 -1508 1851 149 0 3 chr3 27924799 27925081 -190112077 - AluSx SINE Alu -31 281 1 2212 286 162 17 chr3 27925081 27925329 -190111829 + L2 LINE L2 1806 2016 -1298 188 200 0 0 chr3 27925329 27925364 -190111794 + L2 LINE L2 3277 3311 -2 202 235 20 0 chr3 27925562 27925613 -190111545 - L2 LINE L2 -1 3312 3261 269 306 59 48 chr3 27925929 27926115 -190111043 - L2 LINE L2 -411 2903 2716 2541 62 0 3 chr3 27926417 27926725 -190110433 - AluY SINE Alu -4 307 1 3727 225 112 13 chr3 27926729 27928123 -190109035 + L1ME1 LINE L1 4631 6160 -6 540 225 70 77 chr3 27928162 27928397 -190108761 + L1M4 LINE L1 4394 4632 -1514 27381 83 42 48 chr3 27928439 27932755 -190104403 - HERV17 LTR ERV1 -4340 4286 1 3666 53 47 53 chr3 27932755 27933283 -190103875 - LTR17 LTR ERV1 0 780 256 1994 126 17 3 chr3 27933774 27934067 -190103091 + AluSx SINE Alu 1 297 -15 2140 99 28 0 chr3 27935522 27935805 -190101353 + AluSg SINE Alu 4 294 -16 249 241 0 17 chr3 27935888 27935946 -190101212 - MLT1K LTR MaLR -17 571 515 234 239 0 0 chr3 27936562 27936608 -190100550 + (TG)n Simple_repeat Simple_repeat 2 47 0 2082 110 0 7 chr3 27936869 27937181 -190099977 - AluSx SINE Alu 0 323 14 453 19 0 0 chr3 27938659 27938713 -190098445 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 907 178 153 45 chr3 27939416 27939632 -190097526 + MER33 DNA MER1_type 5 261 -2324 2146 146 0 0 chr3 27939632 27939941 -190097217 - AluJo SINE Alu -3 309 1 907 178 153 45 chr3 27939941 27940011 -190097147 + MER33 DNA MER1_type 261 322 -2 2899 152 29 0 chr3 27940191 27940645 -190096513 + MLT1C LTR MaLR 1 467 0 22 0 0 0 chr3 27941554 27941576 -190095582 + AT_rich Low_complexity Low_complexity 1 22 0 2295 107 0 0 chr3 27941580 27941878 -190095280 + AluSq SINE Alu 1 298 -15 252 206 43 76 chr3 27942395 27942487 -190094671 - Charlie8 DNA MER1_type -2208 209 121 619 165 10 0 chr3 27943103 27943200 -190093958 + AluJ/FLAM SINE Alu 2 99 -213 1066 90 0 7 chr3 27943200 27943344 -190093814 + AluJo/FRAM SINE Alu 167 309 -3 2024 132 7 13 chr3 27943739 27944049 -190093109 + AluSx SINE Alu 1 308 -4 246 156 0 0 chr3 27944119 27944164 -190092994 + (TA)n Simple_repeat Simple_repeat 1 45 0 1315 126 117 0 chr3 27944190 27944396 -190092762 + MER30 DNA MER1_type 1 230 0 23 54 0 0 chr3 27944784 27944821 -190092337 + AT_rich Low_complexity Low_complexity 1 37 0 770 162 0 73 chr3 27944886 27945022 -190092136 + FLAM_C SINE Alu 2 127 -16 37 0 0 0 chr3 27945022 27945059 -190092099 + AT_rich Low_complexity Low_complexity 1 37 0 1162 243 55 80 chr3 27945566 27946006 -190091152 + HERVL68 LTR ERVL 142 570 -4960 1209 253 16 30 chr3 27946057 27946361 -190090797 + HERVL68 LTR ERVL 567 866 -4664 340 70 0 0 chr3 27946390 27946433 -190090725 + AluSp SINE Alu 1 43 -259 1579 91 10 0 chr3 27946433 27946642 -190090516 + AluSp SINE Alu 87 297 -16 435 253 171 67 chr3 27947021 27947290 -190089868 + HERVL68 LTR ERVL 1313 1609 -3921 6681 237 65 21 chr3 27947291 27947724 -190089434 + HERVL68 LTR ERVL 2522 2935 -2595 1588 169 48 7 chr3 27947724 27947996 -190089162 - AluJo SINE Alu -29 283 1 6681 237 65 21 chr3 27947996 27949332 -190087826 + HERVL68 LTR ERVL 2935 4368 -1162 842 191 0 7 chr3 27949349 27949496 -190087662 + FRAM SINE Alu 1 146 -30 336 24 0 0 chr3 27949496 27949537 -190087621 + (TAAAA)n Simple_repeat Simple_repeat 1 41 0 473 218 7 106 chr3 27949537 27949593 -190087565 - HERVL40 LTR ERVL -982 4548 4488 2100 118 38 0 chr3 27949593 27949881 -190087277 - AluSx SINE Alu -13 299 1 473 218 7 106 chr3 27949881 27949966 -190087192 - HERVL40 LTR ERVL -1042 4488 4421 790 239 90 106 chr3 27949968 27950269 -190086889 + HERVL68 LTR ERVL 2047 4659 -695 324 225 45 0 chr3 27950432 27950521 -190086637 + HERVL68 LTR ERVL 2455 2547 -490 588 257 69 30 chr3 27950796 27950998 -190086160 + MER63A DNA MER1_type 1 210 0 2222 88 18 0 chr3 27951347 27951631 -190085527 + AluSq SINE Alu 1 289 -24 407 171 21 7 chr3 27951631 27951771 -190085387 + (TA)n Simple_repeat Simple_repeat 1 142 0 2446 41 3 3 chr3 27951840 27952135 -190085023 + AluY SINE Alu 1 295 -16 2377 88 3 0 chr3 27952546 27952851 -190084307 + AluSc SINE Alu 1 306 -3 846 207 62 2 chr3 27952938 27953165 -190083993 + AluJb SINE Alu 3 294 -18 * 1390 179 4 4 chr3 27953164 27953398 -190083760 + AluJo SINE Alu 68 301 -11 2171 115 0 0 chr3 27953401 27953731 -190083427 + AluSq SINE Alu 1 330 0 1767 116 40 0 chr3 27953750 27954000 -190083158 + AluSx SINE Alu 41 300 -12 646 229 42 24 chr3 27955004 27955170 -190081988 + L1ME2 LINE L1 5995 6163 -1 301 228 53 18 chr3 27955284 27955398 -190081760 + L1MC4 LINE L1 7924 8041 -1 263 337 66 39 chr3 27955439 27955620 -190081538 + L2 LINE L2 2562 2747 -567 1892 134 17 0 chr3 27955724 27956016 -190081142 - AluSx SINE Alu -15 297 1 2598 51 0 6 chr3 27956181 27956494 -190080664 - AluY SINE Alu 0 311 1 840 167 75 6 chr3 27957666 27957840 -190079318 - MER5A DNA MER1_type 0 189 4 1215 204 0 9 chr3 27957852 27958077 -190079081 - MER58A DNA MER1_type -1 223 1 218 271 167 0 chr3 27959030 27959126 -190078032 - L2 LINE L2 -4 3309 3198 358 290 0 28 chr3 27959428 27959535 -190077623 - MER5A DNA MER1_type -85 104 1 694 206 144 6 chr3 27959729 27959889 -190077269 - MER5A DNA MER1_type 0 189 8 2039 148 0 0 chr3 27961243 27961541 -190075617 + AluJb SINE Alu 1 298 -14 765 200 0 14 chr3 27961584 27961729 -190075429 + FLAM_C SINE Alu 1 143 0 298 288 90 61 chr3 27961793 27962071 -190075087 + L1ME LINE L1 5379 5664 -457 2066 134 7 0 chr3 27962101 27962393 -190074765 + AluSx SINE Alu 3 296 -16 21 36 0 0 chr3 27962803 27962831 -190074327 + AT_rich Low_complexity Low_complexity 1 28 0 2342 87 3 3 chr3 27963119 27963417 -190073741 + AluSq SINE Alu 1 298 -15 1722 194 46 83 chr3 27963623 27964251 -190072907 - L1 LINE L1 -1742 5823 5219 * 16195 153 19 81 chr3 27964248 27965154 -190072004 - L1 LINE L1 -4194 3371 2411 742 168 0 0 chr3 27965154 27965261 -190071897 - FLAM_C SINE Alu -35 108 2 16195 153 19 81 chr3 27965261 27965503 -190071655 - L1 LINE L1 -5154 2411 2156 2117 136 13 0 chr3 27965503 27965811 -190071347 - AluSx SINE Alu 0 312 1 16195 153 19 81 chr3 27965811 27968135 -190069023 - L1 LINE L1 -5409 2156 12 25 31 0 0 chr3 27968231 27968263 -190068895 + AT_rich Low_complexity Low_complexity 1 32 0 2188 99 3 0 chr3 27968428 27968840 -190068318 - AluSq SINE Alu 0 413 1 448 284 158 69 chr3 27968992 27969309 -190067849 - L1ME LINE L1 -393 5728 5384 4364 174 40 25 chr3 27969772 27970748 -190066410 - L1 LINE L1 -874 5272 4279 2028 135 0 26 chr3 27970748 27971052 -190066106 - AluSx SINE Alu -16 296 1 4364 174 40 25 chr3 27971052 27971106 -190066052 - L1 LINE L1 -1867 4279 4227 674 222 34 28 chr3 27971821 27971997 -190065161 - AluJo SINE Alu -12 300 124 272 212 24 24 chr3 27972150 27972235 -190064923 + Charlie8 DNA MER1_type 96 180 -2237 961 234 117 81 chr3 27972273 27972585 -190064573 + MLT1D LTR MaLR 20 356 -149 806 154 0 22 chr3 27972585 27972721 -190064437 + FLAM_C SINE Alu 1 133 0 961 234 117 81 chr3 27972721 27972877 -190064281 + MLT1D LTR MaLR 356 505 0 773 256 33 47 chr3 27973068 27973283 -190063875 - MIR SINE MIR -38 224 13 27 29 0 0 chr3 27973496 27973530 -190063628 + AT_rich Low_complexity Low_complexity 1 34 0 30 0 0 0 chr3 27973584 27973614 -190063544 + AT_rich Low_complexity Low_complexity 1 30 0 2267 109 3 0 chr3 27973891 27974193 -190062965 - AluSx SINE Alu -9 303 1 2072 127 46 8 chr3 27974375 27974769 -190062389 + L1 LINE L1 4528 4936 -1210 1440 151 78 20 chr3 27974772 27975017 -190062141 - AluJo SINE Alu -51 261 3 191 35 0 35 chr3 27975326 27975355 -190061803 + (TAA)n Simple_repeat Simple_repeat 1 28 0 433 289 181 10 chr3 27975359 27975563 -190061595 - MIR SINE MIR -21 241 3 1692 186 10 7 chr3 27975598 27975889 -190061269 + AluJo SINE Alu 1 292 -20 23 0 0 0 chr3 27975889 27975912 -190061246 + AT_rich Low_complexity Low_complexity 1 23 0 984 120 0 0 chr3 27976428 27976561 -190060597 + AluSq/x SINE Alu 1 133 -179 1454 117 0 28 chr3 27976565 27976778 -190060380 + AluSg/x SINE Alu 83 289 -21 2187 94 3 10 chr3 27977023 27977313 -190059845 + AluSx SINE Alu 1 290 -22 183 42 0 0 chr3 27977313 27977337 -190059821 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 702 177 15 8 chr3 27977879 27978009 -190059149 + AluJb SINE Alu 1 131 -181 23 33 0 0 chr3 27978009 27978039 -190059119 + AT_rich Low_complexity Low_complexity 1 30 0 2080 122 3 16 chr3 27979484 27979796 -190057362 + AluSx SINE Alu 2 309 -3 2053 117 3 31 chr3 27979979 27980296 -190056862 - AluSq SINE Alu -5 308 1 627 242 0 0 chr3 27981726 27981858 -190055300 + FRAM SINE Alu 38 169 -7 2278 113 0 0 chr3 27982673 27982973 -190054185 + AluSq SINE Alu 2 301 -12 437 240 0 0 chr3 27982976 27983072 -190054086 + MER34 LTR ERV1 1 96 -446 445 328 109 46 chr3 27983082 27983384 -190053774 + HAL1 LINE L1 305 625 -1882 769 233 127 21 chr3 27983427 27983663 -190053495 + MIR SINE MIR 2 262 0 445 292 135 65 chr3 27983672 27983774 -190053384 + HAL1 LINE L1 659 752 -1755 2092 116 7 7 chr3 27983774 27984076 -190053082 + AluSq SINE Alu 1 302 -11 445 292 135 65 chr3 27984076 27984145 -190053013 + HAL1 LINE L1 752 815 -1692 1547 185 0 56 chr3 27984145 27984464 -190052694 - AluJb SINE Alu -11 301 1 445 292 135 65 chr3 27984464 27984705 -190052453 + HAL1 LINE L1 815 1101 -1406 731 150 8 8 chr3 27984743 27984863 -190052295 + FLAM_C SINE Alu 6 125 -18 1669 225 61 82 chr3 27984877 27984990 -190052168 - L1MC4 LINE L1 -826 7216 7102 2261 116 0 0 chr3 27984990 27985300 -190051858 - AluSg SINE Alu 0 310 1 1669 225 61 82 chr3 27985300 27985590 -190051568 - L1MC4 LINE L1 -940 7102 6807 612 37 0 0 chr3 27985590 27985672 -190051486 + L1PA3 LINE L1 6073 6154 -1 1669 225 61 82 chr3 27985672 27985752 -190051406 - L1MC4 LINE L1 -1235 6807 6727 2353 67 10 0 chr3 27985752 27986049 -190051109 + AluY SINE Alu 1 300 -11 1669 225 61 82 chr3 27986049 27986333 -190050825 - L1MC4 LINE L1 -1315 6727 6463 2404 61 10 0 chr3 27987152 27987446 -190049712 - AluY SINE Alu -14 297 1 2303 75 14 0 chr3 27987449 27987744 -190049414 - AluSp SINE Alu -12 301 3 487 209 0 0 chr3 27987749 27987835 -190049323 - AluJb SINE Alu -19 293 208 213 159 65 47 chr3 27988685 27988792 -190048366 + (TATAA)n Simple_repeat Simple_repeat 2 110 0 338 313 106 5 chr3 27988825 27989042 -190048116 + L1M4 LINE L1 3622 3860 -2286 2018 120 24 0 chr3 27989240 27989531 -190047627 - AluSx SINE Alu -14 298 1 924 146 0 0 chr3 27989994 27990124 -190047034 - FLAM_C SINE Alu -2 131 2 2182 102 3 16 chr3 27990212 27990517 -190046641 + AluSg SINE Alu 4 304 -6 572 299 83 21 chr3 27990669 27990910 -190046248 + MIR SINE MIR 3 258 -4 26 64 0 0 chr3 27991012 27991059 -190046099 + AT_rich Low_complexity Low_complexity 1 47 0 1547 184 23 40 chr3 27991392 27991636 -190045522 - AluJo SINE Alu -13 299 59 1752 131 6 92 chr3 27991636 27991971 -190045187 + AluSq SINE Alu 2 307 -6 1547 184 23 40 chr3 27991971 27992030 -190045128 - AluJo SINE Alu -253 59 1 365 294 55 0 chr3 27992539 27992648 -190044510 - L2 LINE L2 -4 3309 3195 186 348 57 57 chr3 27993290 27993431 -190043727 + L2 LINE L2 2949 3089 -183 216 316 63 32 chr3 27993513 27993608 -190043550 + L2 LINE L2 3137 3234 -38 621 176 33 4 chr3 27995084 27995336 -190041822 + CT-rich Low_complexity Low_complexity 1 259 0 2215 95 7 0 chr3 27995699 27995993 -190041165 - AluSx SINE Alu -16 296 1 303 381 8 0 chr3 28096147 28096265 -189940893 - L2 LINE L2 0 3272 3154 1339 79 6 0 chr3 28096394 28096571 -189940587 - AluSq SINE Alu -8 305 128 711 128 38 8 chr3 28096575 28096708 -189940450 - AluSg/x SINE Alu -10 302 166 609 279 77 6 chr3 28096847 28097030 -189940128 - MIR SINE MIR 0 262 67 724 208 169 35 chr3 28097178 28097409 -189939749 + MIR SINE MIR 1 262 0 340 74 19 0 chr3 28098096 28098150 -189939008 - Alu SINE Alu -253 55 1 701 274 120 102 chr3 28098409 28098910 -189938248 + L2 LINE L2 2804 3313 0 2332 92 7 0 chr3 28099456 28099749 -189937409 + AluSp SINE Alu 1 295 -18 201 395 12 0 chr3 28100436 28100522 -189936636 - L2 LINE L2 -674 2640 2554 279 202 161 40 chr3 28100567 28100691 -189936467 - L1MC5 LINE L1 -68 7893 7755 488 188 117 104 chr3 28100692 28100932 -189936226 - L2 LINE L2 -770 2544 2302 666 268 6 11 chr3 28101057 28101236 -189935922 + MER5B DNA MER1_type 1 178 0 525 244 165 37 chr3 28101259 28101423 -189935735 + MER5A DNA MER1_type 3 187 -2 272 350 57 16 chr3 28101423 28101611 -189935547 + L2 LINE L2 2909 3104 -168 7516 30 0 1 chr3 28101984 28103416 -189933742 - L1PA3 LINE L1 0 6155 4717 829 113 0 0 chr3 28103416 28103531 -189933627 - AluY SINE Alu -78 233 119 210 91 0 0 chr3 28103873 28103906 -189933252 + (A)n Simple_repeat Simple_repeat 1 33 0 1237 183 34 52 chr3 28104134 28104355 -189932803 - MER33 DNA MER1_type -2261 324 109 2218 132 0 3 chr3 28104355 28104665 -189932493 + AluSx SINE Alu 1 309 -3 1237 183 34 52 chr3 28104665 28104771 -189932387 - MER33 DNA MER1_type -2476 109 3 2542 71 0 3 chr3 28104863 28105174 -189931984 + AluY SINE Alu 1 310 -1 4424 145 24 1 chr3 28105429 28106148 -189931010 - L1PA16 LINE L1 -16 6150 5416 260 303 0 0 chr3 28106517 28106583 -189930575 + (CA)n Simple_repeat Simple_repeat 1 66 0 205 292 0 0 chr3 28107726 28107774 -189929384 - L2 LINE L2 -15 3298 3251 331 259 211 24 chr3 28108956 28109174 -189927984 - MER102a DNA MER1_type -3 327 71 2068 117 13 7 chr3 28110099 28110398 -189926760 + AluSx SINE Alu 1 301 -11 249 337 21 11 chr3 28110588 28110683 -189926475 + MIR SINE MIR 44 139 -69 30 45 0 0 chr3 28110998 28111042 -189926116 + AT_rich Low_complexity Low_complexity 1 44 0 243 0 0 0 chr3 28111783 28111810 -189925348 + (T)n Simple_repeat Simple_repeat 1 27 0 505 258 84 0 chr3 28112721 28112876 -189924282 - MER3 DNA MER1_type -30 179 12 281 254 76 17 chr3 28112891 28113009 -189924149 - L1MC/D LINE L1 -1980 5828 5704 322 302 71 63 chr3 28113020 28113660 -189923498 - L1MC/D LINE L1 -460 5661 4993 2071 71 0 43 chr3 28113772 28114084 -189923074 - AluSc SINE Alu 0 311 12 1045 172 146 8 chr3 28114179 28114440 -189922718 - MER33 DNA MER1_type -22 302 6 891 326 64 64 chr3 28114548 28114761 -189922397 + L3 LINE CR1 933 1145 -432 2510 70 0 0 chr3 28114761 28115061 -189922097 + AluY SINE Alu 1 300 -11 891 326 64 64 chr3 28115061 28115491 -189921667 + L3 LINE CR1 1144 1576 -1 242 189 0 38 chr3 28116604 28116657 -189920501 + L2 LINE L2 3263 3313 0 1739 139 57 7 chr3 28116930 28117210 -189919948 - AluJb SINE Alu -18 294 1 694 165 17 0 chr3 28117248 28117363 -189919795 + FLAM_C SINE Alu 1 117 -26 330 279 100 0 chr3 28117524 28117664 -189919494 - L1ME4a LINE L1 -6 6115 5962 1687 151 3 68 chr3 28118330 28118654 -189918504 - AluJo SINE Alu -9 303 1 34 42 0 0 chr3 28119032 28119080 -189918078 + AT_rich Low_complexity Low_complexity 1 48 0 279 211 0 0 chr3 28119575 28119627 -189917531 + L2 LINE L2 3214 3265 -7 1871 148 24 3 chr3 28119934 28120231 -189916927 - AluSx SINE Alu -9 303 1 23 33 0 0 chr3 28121967 28121997 -189915161 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr3 28123596 28123627 -189913531 + AT_rich Low_complexity Low_complexity 1 31 0 330 258 78 12 chr3 28123783 28123950 -189913208 - L1M4 LINE L1 -3639 2507 2330 270 287 19 9 chr3 28123971 28124079 -189913079 + L1MC/D LINE L1 5703 5811 -1997 212 147 0 0 chr3 28124138 28124172 -189912986 + (GAAAA)n Simple_repeat Simple_repeat 5 38 0 28 29 0 0 chr3 28125831 28125866 -189911292 + AT_rich Low_complexity Low_complexity 1 35 0 719 142 9 0 chr3 28125866 28125972 -189911186 - AluJb SINE Alu -20 292 186 1268 218 59 22 chr3 28126180 28126715 -189910443 - MER69 DNA AcHobo -4 2522 248 452 222 0 0 chr3 28126691 28126772 -189910386 - MER69 DNA AcHobo -2444 82 2 * 5188 100 1 25 chr3 28127265 28128055 -189909103 + L1PA16 LINE L1 1837 2607 -3539 782 181 10 60 chr3 28128055 28128254 -189908904 + L1 LINE L1 4366 4554 -1592 2483 163 24 5 chr3 28128255 28128673 -189908485 + MSTB LTR MaLR 1 426 0 8223 189 51 9 chr3 28128673 28130198 -189906960 + MSTB-int LTR MaLR 1 1595 -56 2370 95 3 0 chr3 28130198 28130504 -189906654 + AluSx SINE Alu 1 307 -5 8223 189 51 9 chr3 28130504 28130544 -189906614 + MSTB-int LTR MaLR 1595 1632 -19 2525 150 26 12 chr3 28130565 28130984 -189906174 + MSTB LTR MaLR 2 426 0 5243 135 32 6 chr3 28130984 28131484 -189905674 + L1PA16 LINE L1 4551 5037 -1129 2788 87 0 13 chr3 28131484 28131864 -189905294 + THE1C LTR MaLR 1 375 0 5243 135 32 6 chr3 28131864 28132958 -189904200 + L1PA16 LINE L1 5037 6165 -1 798 215 13 64 chr3 28132958 28133191 -189903967 - L1MD3 LINE L1 -4 7991 7771 296 301 9 18 chr3 28133238 28133351 -189903807 - L1M4 LINE L1 -1522 4624 4513 396 358 74 18 chr3 28133433 28133827 -189903331 - L1M4 LINE L1 -1632 4514 4099 733 267 108 26 chr3 28133871 28134178 -189902980 - L2 LINE L2 -1262 2052 1721 851 277 134 3 chr3 28134209 28134538 -189902620 - L2 LINE L2 -1994 1320 949 11871 126 14 55 chr3 28134838 28137587 -189899571 - L1P3 LINE L1 -3727 2734 2 9710 192 25 18 chr3 28137587 28137599 -189899559 - L1PA15-16 LINE L1 -3049 3800 3790 195 100 0 0 chr3 28137599 28137629 -189899529 + (TTG)n Simple_repeat Simple_repeat 2 31 0 9710 192 25 18 chr3 28137629 28139459 -189897699 - L1PA15-16 LINE L1 -3059 3790 1924 1925 135 14 17 chr3 28139459 28139756 -189897402 + AluJb SINE Alu 1 296 -16 9710 192 25 18 chr3 28139756 28140450 -189896708 - L1PA15-16 LINE L1 -4925 1924 1236 302 286 16 24 chr3 28140724 28140850 -189896308 + L1ME LINE L1 5687 5811 -310 2297 100 0 22 chr3 28141460 28141771 -189895387 - AluSc SINE Alu -5 304 1 30 27 0 0 chr3 28141999 28142036 -189895122 + AT_rich Low_complexity Low_complexity 1 37 0 185 0 40 0 chr3 28143340 28143365 -189893793 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 15635 27 1 0 chr3 28143381 28145994 -189891164 - L1PA3 LINE L1 -5 6150 3535 1643 187 192 145 chr3 28146982 28147956 -189889202 + LTR28 LTR ERV1 1 1020 0 8837 208 39 20 chr3 28148174 28148396 -189888762 - L1MC/D LINE L1 -557 5609 5393 2188 99 30 0 chr3 28148396 28148699 -189888459 - AluSx SINE Alu 0 312 1 8837 208 39 20 chr3 28148699 28148863 -189888295 - L1MC/D LINE L1 -773 5393 5234 2483 141 20 0 chr3 28148863 28149266 -189887892 - L1PA15 LINE L1 -6 6159 5749 8837 208 39 20 chr3 28149266 28149290 -189887868 - L1MC/D LINE L1 -932 5234 5212 197 32 0 32 chr3 28149290 28149321 -189887837 + (TTG)n Simple_repeat Simple_repeat 1 30 0 8837 208 39 20 chr3 28149321 28151493 -189885665 - L1MC/D LINE L1 -954 5212 3068 7051 197 21 7 chr3 28151494 28153877 -189883281 - L1PA15-16 LINE L1 -4770 2079 2 517 283 57 65 chr3 28154425 28154761 -189882397 + L1ME4a LINE L1 5293 5625 -496 236 297 76 21 chr3 28154827 28154972 -189882186 + L1ME4a LINE L1 5931 6083 -38 258 200 0 0 chr3 28155121 28155181 -189881977 + T-rich Low_complexity Low_complexity 1 60 0 7680 17 12 0 chr3 28155181 28156518 -189880640 - L1PA3 LINE L1 0 6155 4812 302 323 0 19 chr3 28157012 28157173 -189879985 + MER112 DNA MER1_type 97 254 -6 2171 84 4 0 chr3 28157196 28157471 -189879687 + AluSp SINE Alu 1 276 -37 264 59 0 0 chr3 28157471 28157505 -189879653 + (GGGGA)n Simple_repeat Simple_repeat 1 34 0 783 299 53 0 chr3 28157868 28158112 -189879046 - MIR SINE MIR 0 262 6 2304 103 0 22 chr3 28158276 28158595 -189878563 + AluSx SINE Alu 1 312 0 1781 154 4 11 chr3 28158700 28158980 -189878178 + AluJb SINE Alu 3 280 -32 21 36 0 0 chr3 28158980 28159008 -189878150 + AT_rich Low_complexity Low_complexity 1 28 0 * 412 316 37 11 chr3 28159003 28159190 -189877968 - L1MC/D LINE L1 -2017 5791 5600 481 231 56 28 chr3 28159203 28159346 -189877812 - MER113 DNA MER1_type? -216 305 159 22 35 0 0 chr3 28159393 28159422 -189877736 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr3 28160132 28160159 -189876999 + (A)n Simple_repeat Simple_repeat 1 27 0 15517 100 22 0 chr3 28160626 28163739 -189873419 - L1PA7 LINE L1 0 6154 2988 737 105 9 0 chr3 28163740 28163845 -189873313 - U6 snRNA snRNA -1 106 1 374 329 124 29 chr3 28163878 28164185 -189872973 - L2 LINE L2 -1069 2245 1910 4698 57 4 147 chr3 28164203 28165006 -189872152 + LTR12 LTR ERV1 1 688 0 13837 105 18 11 chr3 28165006 28168035 -189869123 + HERV9 LTR ERV1 1 3139 -5260 6021 87 12 8 chr3 28168042 28168904 -189868254 + HERV9 LTR ERV1 4080 4944 -3455 1831 105 64 38 chr3 28168905 28169602 -189867556 + Harlequin LTR ERV1 713 4405 -3380 1001 102 0 0 chr3 28169579 28169736 -189867422 + Harlequin LTR ERV1 1584 1740 -5156 * 5301 96 4 0 chr3 28169734 28170503 -189866655 + Harlequin LTR ERV1 7626 8397 -2 5545 59 0 34 chr3 28170506 28171218 -189865940 + LTR12 LTR ERV1 1 688 0 248 377 117 23 chr3 28171425 28171725 -189865433 - L2 LINE L2 -1634 1680 1353 721 183 15 0 chr3 28171768 28171899 -189865259 + AluJo/FLAM SINE Alu 1 133 -169 1278 115 0 11 chr3 28171902 28172085 -189865073 + AluY SINE Alu 1 181 -130 2877 123 21 58 chr3 28172187 28172435 -189864723 - L1MA6 LINE L1 -160 6140 5884 2541 73 0 0 chr3 28172435 28172737 -189864421 - AluSc SINE Alu 0 309 8 2877 123 21 58 chr3 28172737 28173057 -189864101 - L1MA6 LINE L1 -416 5884 5593 568 208 108 0 chr3 28173057 28173177 -189863981 - AluJb SINE Alu -175 137 5 1901 157 32 8 chr3 28173180 28173718 -189863440 - L1MA6 LINE L1 -691 5609 5066 303 284 24 47 chr3 28173883 28174010 -189863148 + L2 LINE L2 3190 3313 0 585 227 180 26 chr3 28174244 28174438 -189862720 - MER58A DNA MER1_type 0 224 1 729 264 97 0 chr3 28174459 28174686 -189862472 + HsTC2c DNA Tc2 464 712 -17 209 205 0 0 chr3 28174784 28174823 -189862335 - L3 LINE CR1 -1139 438 400 29 0 0 0 chr3 28174932 28174961 -189862197 + AT_rich Low_complexity Low_complexity 1 29 0 41 48 0 0 chr3 28175009 28175071 -189862087 + AT_rich Low_complexity Low_complexity 1 62 0 1790 173 26 7 chr3 28175180 28175642 -189861516 + AluJb SINE Alu 1 468 0 269 133 0 22 chr3 28175642 28175687 -189861471 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 662 263 61 76 chr3 28175944 28176389 -189860769 - L1MEd LINE L1 -5096 1023 586 1278 166 100 44 chr3 28176418 28176689 -189860469 + AluSx SINE Alu 1 286 -26 384 59 0 0 chr3 28176689 28176740 -189860418 + (GGGGA)n Simple_repeat Simple_repeat 1 51 0 220 70 47 23 chr3 28176739 28176782 -189860376 + GA-rich Low_complexity Low_complexity 2 45 0 * 2143 245 46 24 chr3 28176929 28177479 -189859679 + Charlie7 DNA MER1_type 720 1292 -1320 2751 10 0 0 chr3 28177479 28177780 -189859378 + AluYa5 SINE Alu 1 301 -10 2143 245 46 24 chr3 28177780 28177972 -189859186 + Charlie7 DNA MER1_type 1292 1478 -1134 1402 163 0 13 chr3 28178079 28178318 -189858840 + AluJb SINE Alu 1 236 -76 730 257 49 66 chr3 28178345 28178532 -189858626 - LTR16A LTR ERVL -61 389 207 4235 135 28 33 chr3 28178532 28179311 -189857847 - L1MA7 LINE L1 0 6291 5517 730 257 49 66 chr3 28179311 28179427 -189857731 - LTR16A LTR ERVL -243 207 91 772 242 161 27 chr3 28179490 28179831 -189857327 + Charlie7 DNA MER1_type 1542 1948 -664 1919 169 3 13 chr3 28179831 28180138 -189857020 + AluJb SINE Alu 1 304 -8 772 242 161 27 chr3 28180138 28180205 -189856953 + Charlie7 DNA MER1_type 1948 2005 -607 4145 178 45 30 chr3 28180322 28181322 -189855836 + L1P LINE L1 3030 4044 -2102 7095 171 28 3 chr3 28181322 28182332 -189854826 + L1PA14 LINE L1 3872 4855 -1306 1633 154 47 68 chr3 28182332 28182715 -189854443 - THE1C LTR MaLR 0 375 1 7095 171 28 3 chr3 28182715 28183958 -189853200 + L1PA14 LINE L1 4855 6159 -2 26 0 0 0 chr3 28183958 28183984 -189853174 + AT_rich Low_complexity Low_complexity 1 26 0 393 248 20 0 chr3 28183984 28184085 -189853073 + Charlie7 DNA MER1_type 2129 2231 -381 296 133 18 0 chr3 28184186 28184246 -189852912 - Alu SINE Alu -260 40 1 * 870 188 42 5 chr3 28184246 28184447 -189852711 + Charlie5 DNA MER1_type 2377 2585 -27 216 0 0 0 chr3 28184685 28184709 -189852449 + (T)n Simple_repeat Simple_repeat 1 24 0 278 314 29 39 chr3 28185864 28185966 -189851192 - MIR SINE MIR -63 145 45 255 256 0 39 chr3 28186169 28186247 -189850911 - MER116 DNA Mariner 0 80 6 218 324 101 53 chr3 28186430 28186677 -189850481 - MIR SINE MIR -1 261 3 1466 158 5 0 chr3 28188428 28188650 -189848508 + AluJo SINE Alu 85 307 -5 257 284 14 27 chr3 28191186 28191260 -189845898 + L3 LINE CR1 1503 1575 -2 22 0 0 0 chr3 28192158 28192180 -189844978 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 28193369 28193390 -189843768 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 28193505 28193526 -189843632 + AT_rich Low_complexity Low_complexity 1 21 0 375 186 0 0 chr3 28195286 28195388 -189841770 + (TA)n Simple_repeat Simple_repeat 2 103 0 1741 157 91 0 chr3 28195629 28195947 -189841211 - MER7A DNA MER2_type 0 346 2 1112 162 26 64 chr3 28196171 28196405 -189840753 + AluJb SINE Alu 84 308 -4 2245 106 3 0 chr3 28196715 28197008 -189840150 + AluSq SINE Alu 1 294 -19 1809 199 90 37 chr3 28197010 28197058 -189840100 - L1ME2 LINE L1 0 6164 6120 846 111 0 24 chr3 28197058 28197184 -189839974 + FLAM_C SINE Alu 1 123 -10 1809 199 90 37 chr3 28197184 28197682 -189839476 - L1ME2 LINE L1 -44 6120 5589 183 386 34 0 chr3 28197888 28197976 -189839182 - L3 LINE CR1 -1012 565 475 990 57 16 0 chr3 28198110 28198232 -189838926 - AluY SINE Alu -18 293 170 466 274 57 99 chr3 28198512 28198775 -189838383 - MIR SINE MIR -8 254 3 196 309 90 64 chr3 28199505 28199693 -189837465 - L2 LINE L2 -214 3058 2866 529 252 88 17 chr3 28199837 28200075 -189837083 + L1MEd LINE L1 3 257 -5862 554 285 48 69 chr3 28200223 28200514 -189836644 + L1MEd LINE L1 489 773 -5346 329 187 65 28 chr3 28200570 28200677 -189836481 + L1MEd LINE L1 980 1090 -5029 345 280 65 0 chr3 28200689 28200796 -189836362 + L2 LINE L2 3195 3308 -5 244 202 211 10 chr3 28200816 28200920 -189836238 + L1MEd LINE L1 1133 1257 -4862 1441 297 46 45 chr3 28200999 28201993 -189835165 + L1ME2 LINE L1 116 1110 -5286 2910 228 110 37 chr3 28202021 28202346 -189834812 + L1ME2 LINE L1 2965 3265 -2950 3205 124 18 6 chr3 28202346 28202854 -189834304 - MER75 DNA T2_type 0 514 1 2910 228 110 37 chr3 28202854 28203965 -189833193 + L1ME2 LINE L1 3265 4506 -1709 2212 148 80 2 chr3 28204132 28204531 -189832627 - MSTB1 LTR MaLR -2 430 1 249 230 72 50 chr3 28204785 28204885 -189832273 + L1MB3 LINE L1 3643 3748 -2398 2254 101 0 3 chr3 28204885 28205181 -189831977 + AluSx SINE Alu 1 295 -17 249 230 72 50 chr3 28205181 28205219 -189831939 + L1MB3 LINE L1 3748 3784 -2362 730 202 118 0 chr3 28205228 28205456 -189831702 + L1MB3 LINE L1 5114 5368 -778 * 1908 161 55 5 chr3 28205454 28205839 -189831319 + L1MB3 LINE L1 5738 6141 -42 1311 171 92 61 chr3 28205839 28206132 -189831026 + AluJo SINE Alu 1 302 -10 346 302 62 10 chr3 28206256 28206448 -189830710 + L1P LINE L1 4856 5057 -1089 315 263 118 59 chr3 28206613 28207157 -189830001 + L1ME2 LINE L1 5383 5958 -275 519 138 21 0 chr3 28207395 28207489 -189829669 - MER58 DNA MER1_type 0 2420 2325 478 198 6 185 chr3 28207484 28207641 -189829517 - MER58 DNA MER1_type -239 147 19 * 616 154 8 32 chr3 28207637 28207760 -189829398 + MER3 DNA MER1_type 8 127 -82 2162 48 44 11 chr3 28207760 28208033 -189829125 - AluY SINE Alu -14 297 16 2285 86 21 0 chr3 28209237 28209528 -189827630 + AluSp SINE Alu 1 297 -16 29 60 0 0 chr3 28209600 28209650 -189827508 + AT_rich Low_complexity Low_complexity 1 50 0 924 191 6 0 chr3 28210357 28210514 -189826644 - AluJb SINE Alu -22 290 133 345 226 195 18 chr3 28211175 28211227 -189825931 - MER5A DNA MER1_type -1 188 147 2067 110 13 3 chr3 28211227 28211527 -189825631 + AluSp SINE Alu 1 303 -10 345 226 195 18 chr3 28211527 28211599 -189825559 - MER5A DNA MER1_type -42 147 31 1535 168 3 67 chr3 28211684 28211999 -189825159 + AluJb SINE Alu 14 308 -4 232 258 72 21 chr3 28212019 28212116 -189825042 - L1MC5 LINE L1 -54 7907 7806 2154 104 0 26 chr3 28212134 28212441 -189824717 - AluSq SINE Alu -10 303 5 271 367 39 16 chr3 28212479 28212607 -189824551 + MIR SINE MIR 67 197 -65 217 304 26 9 chr3 28213583 28213698 -189823460 + T-rich Low_complexity Low_complexity 2 118 0 1118 152 119 0 chr3 28214289 28214499 -189822659 + MER46A DNA MER2_type 1 235 -1 2321 64 14 14 chr3 28214522 28214817 -189822341 + AluY SINE Alu 1 295 -16 373 313 131 23 chr3 28215167 28215381 -189821777 + MIR SINE MIR 13 249 -13 23 78 0 0 chr3 28215500 28215551 -189821607 + AT_rich Low_complexity Low_complexity 1 51 0 346 239 0 22 chr3 28216380 28216472 -189820686 + L1ME2 LINE L1 5944 6033 -131 951 202 64 0 chr3 28216472 28216660 -189820498 + MER20 DNA MER1_type 1 200 -19 354 211 48 0 chr3 28216666 28216770 -189820388 + L1ME2 LINE L1 6047 6155 -9 243 0 0 0 chr3 28216885 28216912 -189820246 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1855 294 142 42 chr3 28217409 28218443 -189818715 - L2 LINE L2 0 3313 2384 1962 143 0 14 chr3 28218443 28218736 -189818422 - AluJo SINE Alu -23 289 1 1855 294 142 42 chr3 28218736 28219022 -189818136 - L2 LINE L2 -929 2384 2128 1632 158 53 14 chr3 28219022 28219306 -189817852 + AluJb SINE Alu 1 295 -17 1855 294 142 42 chr3 28219306 28219690 -189817468 - L2 LINE L2 -1185 2128 1454 1266 192 7 97 chr3 28219852 28220160 -189816998 + AluJb SINE Alu 1 280 -32 2165 126 7 0 chr3 28220811 28221113 -189816045 + AluSx SINE Alu 2 305 -7 201 200 20 20 chr3 28221173 28221223 -189815935 + (TATG)n Simple_repeat Simple_repeat 2 51 0 2477 51 0 0 chr3 28221744 28222038 -189815120 + AluY SINE Alu 1 294 -17 198 208 104 0 chr3 28223307 28223355 -189813803 - L2 LINE L2 0 3272 3220 187 293 75 47 chr3 28224693 28224799 -189812359 - MIR SINE MIR -14 248 140 290 366 108 39 chr3 28226148 28226427 -189810731 + L2 LINE L2 2919 3216 -56 1000 220 99 0 chr3 28226796 28227019 -189810139 + MER45B DNA AcHobo 2 246 -794 1764 157 18 3 chr3 28227117 28227403 -189809755 - AluSx SINE Alu -22 290 1 682 207 0 0 chr3 28227409 28227525 -189809633 + MER45B DNA AcHobo 488 603 -437 395 234 0 0 chr3 28227525 28227602 -189809556 + MER45B DNA AcHobo 964 1040 0 347 247 25 0 chr3 28227915 28227996 -189809162 - MIR SINE MIR -174 88 6 1410 191 32 50 chr3 28228531 28228814 -189808344 - AluJo SINE Alu -32 280 3 24 53 0 0 chr3 28228824 28228862 -189808296 + AT_rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr3 28228969 28228994 -189808164 + AT_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr3 28229340 28229361 -189807797 + (T)n Simple_repeat Simple_repeat 1 21 0 468 261 197 18 chr3 28229414 28229632 -189807526 - MIR SINE MIR -1 261 5 266 269 0 0 chr3 28230024 28230091 -189807067 + MLT1C LTR MaLR 196 262 -205 867 221 107 12 chr3 28230091 28230335 -189806823 + MLT1C LTR MaLR 201 467 0 3162 171 39 24 chr3 28230354 28230430 -189806728 + L1MD2 LINE L1 5254 5327 -1032 2207 110 7 7 chr3 28230430 28230738 -189806420 + AluSc SINE Alu 1 308 -1 3162 171 39 24 chr3 28230738 28231333 -189805825 + L1MD2 LINE L1 5327 5935 -424 2185 89 28 3 chr3 28231387 28231678 -189805480 + AluSx SINE Alu 15 312 0 643 81 35 0 chr3 28231794 28231881 -189805277 - HY4 scRNA scRNA -3 90 1 1600 223 61 57 chr3 28231884 28232240 -189804918 - L1MC4 LINE L1 -135 7907 7547 1452 193 15 8 chr3 28232240 28232505 -189804653 + AluSq SINE Alu 31 297 -16 1600 223 61 57 chr3 28232505 28232673 -189804485 - L1MC4 LINE L1 -495 7547 7381 1204 163 12 0 chr3 28232808 28233116 -189804042 - L1PA14 LINE L1 -1 6160 5798 480 252 38 15 chr3 28233108 28233239 -189803919 + L1MD2 LINE L1 5925 6058 -301 * 4502 178 29 7 chr3 28233271 28234236 -189802922 - L1MB8 LINE L1 -5 6173 5190 2126 129 0 13 chr3 28234236 28234545 -189802613 - AluSq SINE Alu -8 305 1 470 231 103 0 chr3 28234552 28234669 -189802489 - FLAM_A SINE Alu -3 130 2 552 193 0 0 chr3 28234771 28234885 -189802273 - L1MB8 LINE L1 -1025 5121 5008 992 204 70 70 chr3 28234890 28235175 -189801983 + L1MD2 LINE L1 6067 6351 -8 1362 205 69 11 chr3 28235772 28236147 -189801011 + LTR37A LTR ERV1 30 426 0 195 338 69 46 chr3 28236221 28236437 -189800721 - L2 LINE L2 -101 3212 2992 399 321 147 36 chr3 28236544 28237049 -189800109 - L2 LINE L2 -2227 1087 527 196 368 0 0 chr3 28237064 28237132 -189800026 - L2 LINE L2 -2902 412 345 352 279 56 62 chr3 28237187 28237560 -189799598 - L1P LINE L1 -834 5312 4942 372 194 14 0 chr3 28237795 28237867 -189799291 + MIR SINE MIR 81 153 -109 32 101 0 0 chr3 28237871 28237980 -189799178 + AT_rich Low_complexity Low_complexity 1 109 0 421 329 127 32 chr3 28238303 28238982 -189798176 - L2 LINE L2 -2 3270 2533 211 284 174 9 chr3 28239017 28239126 -189798032 + L3b LINE CR1 1212 1338 -245 2434 168 68 41 chr3 28239425 28239985 -189797173 + MER90 LTR ERV1 1 575 0 1449 161 80 40 chr3 28240343 28240642 -189796516 - MER44D DNA MER2_type -5 604 24 2244 102 3 0 chr3 28241600 28241894 -189795264 - AluSx SINE Alu -12 300 6 24 0 0 0 chr3 28241915 28241939 -189795219 + AT_rich Low_complexity Low_complexity 1 24 0 1152 163 0 25 chr3 28242165 28242361 -189794797 - AluJo SINE Alu -41 271 81 874 231 185 57 chr3 28242414 28242553 -189794605 - L1MC4 LINE L1 0 8042 7922 423 0 0 0 chr3 28242553 28242600 -189794558 + (CA)n Simple_repeat Simple_repeat 2 48 0 874 231 185 57 chr3 28242600 28242919 -189794239 - L1MC4 LINE L1 -120 7922 7525 264 271 80 33 chr3 28242924 28243075 -189794083 + Charlie7 DNA MER1_type 2454 2611 -1 372 160 0 0 chr3 28293172 28293272 -189743886 + G-rich Low_complexity Low_complexity 1 100 0 30203 34 2 0 chr3 28293314 28297954 -189739204 + L1PA3 LINE L1 1507 6154 -1 6858 118 5 11 chr3 28298757 28300176 -189736982 + L1MA1 LINE L1 4887 6297 -5 306 306 139 0 chr3 28300282 28300390 -189736768 - L2 LINE L2 -1 3312 3190 245 260 170 10 chr3 28300647 28300747 -189736411 - MIR SINE MIR -46 216 101 1802 191 25 0 chr3 28300894 28301323 -189735835 - MLT2B1 LTR ERVL 0 554 3 1476 318 26 61 chr3 28301398 28302278 -189734880 - L2 LINE L2 -83 3230 2387 386 332 58 31 chr3 28302563 28302855 -189734303 - LTR16C LTR ERVL -90 401 102 1671 204 0 10 chr3 28303596 28303890 -189733268 + AluJo SINE Alu 1 291 -21 244 196 208 40 chr3 28304210 28304383 -189732775 + L1MC5 LINE L1 7664 7865 -96 246 62 0 0 chr3 28305170 28305202 -189731956 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 1040 199 11 0 chr3 28306005 28306191 -189730967 + MER5A DNA MER1_type 1 188 -1 864 206 78 0 chr3 28306477 28306657 -189730501 - MER3 DNA MER1_type 0 209 16 870 140 0 15 chr3 28306661 28306797 -189730361 - AluJo SINE Alu -178 134 1 830 203 0 0 chr3 28306878 28307031 -189730127 + MER63A DNA MER1_type 58 210 0 825 260 63 4 chr3 28309619 28309873 -189727285 + MLT1H LTR MaLR 23 291 -258 424 304 137 34 chr3 28311339 28311543 -189725615 + MIR SINE MIR 36 260 -2 1769 177 47 113 chr3 28311669 28311779 -189725379 + L1MC4 LINE L1 7441 7557 -485 2481 72 3 0 chr3 28311779 28312084 -189725074 - AluSp SINE Alu -6 307 2 1769 177 47 113 chr3 28312084 28312435 -189724723 + L1MC4 LINE L1 7557 7849 -193 2099 119 19 19 chr3 28312435 28312747 -189724411 - AluSx SINE Alu 0 312 1 1769 177 47 113 chr3 28312747 28312929 -189724229 + L1MC4 LINE L1 7849 8042 0 390 284 46 126 chr3 28312965 28313250 -189723908 + L2 LINE L2 3009 3270 -2 1933 143 38 35 chr3 28315512 28315884 -189721274 - THE1C LTR MaLR 0 375 3 251 350 82 66 chr3 28316012 28316315 -189720843 + L2 LINE L2 2576 2883 -431 2325 93 3 13 chr3 28316341 28316643 -189720515 - AluSp SINE Alu -14 299 1 236 196 0 0 chr3 28316831 28316887 -189720271 - L1MC4 LINE L1 -1344 6698 6643 3190 58 5 16 chr3 28317018 28317465 -189719693 - L1P LINE L1 -5050 1096 655 381 326 65 28 chr3 28317590 28317892 -189719266 - MLT1J2 LTR MaLR -66 380 65 1185 247 90 14 chr3 28318618 28318974 -189718184 + MSTD LTR MaLR 5 387 -9 1053 310 26 69 chr3 28319047 28319680 -189717478 - ERVL LTR ERVL -323 5331 4767 2078 153 19 25 chr3 28319680 28320047 -189717111 - MLT1A1 LTR MaLR 0 365 1 1053 310 26 69 chr3 28320047 28320198 -189716960 - ERVL LTR ERVL -887 4767 4611 342 289 126 15 chr3 28320369 28320504 -189716654 - MIR3 SINE MIR -32 176 27 246 226 0 0 chr3 28320725 28320787 -189716371 + L2 LINE L2 2996 3057 -215 230 295 39 0 chr3 28321102 28321180 -189715978 + L2 LINE L2 2303 2383 -931 22 0 0 0 chr3 28321265 28321287 -189715871 + AT_rich Low_complexity Low_complexity 1 22 0 475 279 28 0 chr3 28321488 28321667 -189715491 + Charlie8 DNA MER1_type 82 265 -2152 217 315 62 15 chr3 28321768 28321898 -189715260 + L2 LINE L2 2929 3064 -208 1774 176 70 40 chr3 28322179 28322623 -189714535 - LTR2B LTR ERV1 0 490 34 38178 65 2 7 chr3 28322644 28327752 -189709406 - Harlequin LTR ERV1 0 6896 1813 8165 62 74 107 chr3 28327735 28329200 -189707958 - Harlequin LTR ERV1 -5480 1416 1 * 1733 180 77 40 chr3 28329200 28329644 -189707514 - LTR2B LTR ERV1 0 490 31 780 286 18 13 chr3 28329950 28330177 -189706981 + MIR SINE MIR 35 262 0 829 241 127 0 chr3 28330321 28330533 -189706625 + MIR SINE MIR 3 241 -21 498 250 42 30 chr3 28330571 28330739 -189706419 - MIR SINE MIR -48 214 45 715 357 31 3 chr3 28330746 28331096 -189706062 + L2 LINE L2 2242 2601 -713 271 283 26 79 chr3 28332017 28332169 -189704989 + MIR3 SINE MIR 46 189 -19 436 230 0 0 chr3 28332376 28332476 -189704682 + MER103 DNA DNA 22 121 -45 225 261 33 43 chr3 28332626 28332718 -189704440 - L2 LINE L2 -8 3305 3215 2290 96 7 0 chr3 28333130 28333422 -189703736 - AluSg SINE Alu -16 294 1 407 289 100 17 chr3 28333486 28333666 -189703492 - MIR SINE MIR -56 206 12 567 282 29 0 chr3 28333691 28333861 -189703297 - MER63A DNA MER1_type -35 175 1 234 384 103 34 chr3 28334188 28334334 -189702824 + L2 LINE L2 3115 3270 -2 32 26 0 0 chr3 28334872 28334911 -189702247 + AT_rich Low_complexity Low_complexity 1 39 0 492 230 170 15 chr3 28335023 28335158 -189702000 + MER5A DNA MER1_type 27 182 -7 795 259 70 73 chr3 28335901 28336445 -189700713 + MER34 LTR ERV1 1 542 0 280 222 0 0 chr3 28336493 28336547 -189700611 + GA-rich Low_complexity Low_complexity 1 54 0 1920 118 59 7 chr3 28337345 28337642 -189699516 - AluSg SINE Alu 0 311 1 2533 70 0 6 chr3 28337915 28338228 -189698930 - AluY SINE Alu 0 311 1 1253 277 32 41 chr3 28338521 28338958 -189698200 - MLT1G LTR MaLR -95 495 63 2579 144 12 2 chr3 28338959 28339389 -189697769 + MER57B LTR ERV1 1 434 0 3911 147 19 14 chr3 28339389 28340057 -189697101 + MER57B-int LTR ERV1 1 672 -6865 3496 120 54 0 chr3 28340056 28340597 -189696561 + MER57B-int LTR ERV1 290 859 -5087 * 4235 162 59 4 chr3 28340580 28341359 -189695799 + MER57B-int LTR ERV1 1550 2371 -5166 921 121 11 22 chr3 28341358 28341533 -189695625 + MER57B-int LTR ERV1 1503 2014 -3932 * 2801 118 34 36 chr3 28341509 28341850 -189695308 + MER57B-int LTR ERV1 2167 2507 -5262 2314 107 3 3 chr3 28341850 28342159 -189694999 + AluY SINE Alu 1 309 -2 2801 118 34 36 chr3 28342159 28342448 -189694710 + MER57B-int LTR ERV1 2507 4065 -3704 1384 109 0 0 chr3 28342450 28342633 -189694525 + AluSg/x SINE Alu 129 311 -1 4401 148 65 47 chr3 28342633 28343756 -189693402 + MER57B-int LTR ERV1 2491 4041 -1720 * 11886 98 94 65 chr3 28343750 28344291 -189692867 + MER57B-int LTR ERV1 5310 5834 -1703 2271 98 20 7 chr3 28344291 28344597 -189692561 - AluSg SINE Alu 0 310 1 11886 98 94 65 chr3 28344597 28345624 -189691534 + MER57B-int LTR ERV1 5834 6960 -577 2085 115 11 0 chr3 28345624 28345938 -189691220 - AluSx SINE Alu 0 317 1 11886 98 94 65 chr3 28345938 28346533 -189690625 + MER57B-int LTR ERV1 6960 7537 0 2642 142 21 0 chr3 28346533 28346955 -189690203 + MER57B LTR ERV1 1 431 -3 290 333 40 33 chr3 28347771 28347921 -189689237 - MIR SINE MIR -81 181 31 2661 278 107 29 chr3 28348318 28349440 -189687718 - L2 LINE L2 -399 2915 1706 346 167 11 11 chr3 28349457 28349547 -189687611 + (TA)n Simple_repeat Simple_repeat 1 90 0 369 0 0 0 chr3 28349549 28349590 -189687568 + (TG)n Simple_repeat Simple_repeat 2 42 0 847 163 90 6 chr3 28349622 28349800 -189687358 - MER50 LTR ERV1 -19 715 523 588 269 126 31 chr3 28349864 28350254 -189686904 - MER50 LTR ERV1 -298 436 10 495 308 147 35 chr3 28350321 28350688 -189686470 - L1MC4 LINE L1 -547 7495 7088 5767 130 11 8 chr3 28350770 28351931 -189685227 + L1MA3 LINE L1 5062 6226 -79 335 145 16 0 chr3 28351931 28351993 -189685165 - AluSp/q SINE Alu -3 300 238 1305 146 5 15 chr3 28351994 28352199 -189684959 + AluSg/x SINE Alu 80 282 -30 219 103 0 0 chr3 28352203 28352242 -189684916 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 22 35 0 0 chr3 28352273 28352302 -189684856 + AT_rich Low_complexity Low_complexity 1 29 0 1316 221 77 83 chr3 28352307 28352930 -189684228 + LTR28 LTR ERV1 402 1020 0 675 260 30 24 chr3 28353011 28353410 -189683748 - L1MEc LINE L1 -4844 1371 961 1276 201 156 76 chr3 28353411 28354099 -189683059 + LTR1B LTR ERV1 1 743 -83 3083 243 44 15 chr3 28354226 28354774 -189682384 - L1MEc LINE L1 -5427 969 383 1885 156 6 16 chr3 28354774 28355089 -189682069 + AluJb SINE Alu 1 312 0 3083 243 44 15 chr3 28355089 28355448 -189681710 - L1MEc LINE L1 -6013 383 36 857 176 0 0 chr3 28356715 28356846 -189680312 - FLAM_C SINE Alu -12 131 1 271 310 0 0 chr3 28358110 28358181 -189678977 - MIR SINE MIR -136 126 56 256 303 13 0 chr3 28358498 28358574 -189678584 - MIR SINE MIR -116 146 70 456 306 110 14 chr3 28359126 28359335 -189677823 + MIR SINE MIR 15 243 -19 191 240 100 0 chr3 28359401 28359451 -189677707 - MIR SINE MIR -62 146 92 250 274 0 65 chr3 28359632 28359694 -189677464 + MIR SINE MIR 67 125 -83 436 119 0 0 chr3 28359699 28359758 -189677400 + AluSc SINE Alu 230 288 -21 347 269 69 35 chr3 28359863 28360008 -189677150 + L2 LINE L2 3160 3309 -4 2230 127 0 6 chr3 28361292 28361606 -189675552 + AluSq SINE Alu 1 312 -1 263 274 95 0 chr3 28361621 28361716 -189675442 - L1ME LINE L1 -302 5819 5716 306 283 33 20 chr3 28361789 28361941 -189675217 - HAL1b LINE L1 -7 1341 1188 205 276 52 0 chr3 28362068 28362126 -189675032 - MER5B DNA MER1_type -9 169 109 1645 218 81 63 chr3 28364715 28365299 -189671859 + MLT1G1 LTR MaLR 2 595 0 326 368 36 45 chr3 28365481 28365701 -189671457 + L2 LINE L2 3035 3252 -20 342 358 34 17 chr3 28366111 28366290 -189670868 - MER5A DNA MER1_type 0 189 8 769 259 126 43 chr3 28367557 28367977 -189669181 - LTR16A1 LTR ERVL -2 455 1 211 219 0 0 chr3 28368962 28369003 -189668155 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 463 187 30 18 chr3 28369102 28369228 -189667930 - L1ME2 LINE L1 -2 6168 6040 1152 208 59 44 chr3 28369261 28369602 -189667556 - L1ME2 LINE L1 -109 6055 5710 848 123 23 0 chr3 28369801 28369931 -189667227 - FLAM_C SINE Alu 0 133 1 28 86 0 0 chr3 28370894 28370964 -189666194 + AT_rich Low_complexity Low_complexity 1 70 0 1548 186 125 6 chr3 28373446 28373757 -189663401 + MER7A DNA MER2_type 1 346 0 261 0 0 0 chr3 28375124 28375153 -189662005 + (TC)n Simple_repeat Simple_repeat 2 30 0 * 273 29 0 0 chr3 28375152 28375186 -189661972 + (TG)n Simple_repeat Simple_repeat 1 34 0 201 74 0 0 chr3 28375191 28375218 -189661940 + (GGGA)n Simple_repeat Simple_repeat 3 29 0 657 282 41 44 chr3 28376854 28377148 -189660010 - MER102a DNA MER1_type -5 325 33 267 305 79 73 chr3 28378991 28379168 -189657990 + MIR SINE MIR 59 236 -26 603 215 156 32 chr3 28379210 28379396 -189657762 - MIR SINE MIR -6 256 48 523 269 136 23 chr3 28379481 28379871 -189657287 - L1ME4a LINE L1 -153 5968 5535 273 301 125 91 chr3 28379893 28380069 -189657089 - MIR3 SINE MIR -9 199 18 210 196 0 20 chr3 28380426 28380477 -189656681 + A-rich Low_complexity Low_complexity 5 54 0 529 323 47 5 chr3 28381407 28381599 -189655559 + MIR SINE MIR 1 200 -62 209 309 61 42 chr3 28381670 28381835 -189655323 - L2 LINE L2 -1217 2097 1930 267 362 45 20 chr3 28383664 28383863 -189653295 + Charlie8 DNA MER1_type 43 246 -2171 6120 110 4 4 chr3 28383906 28385357 -189651801 - L1PA13 LINE L1 -1 6162 4705 31575 106 12 54 chr3 28385359 28391784 -189645374 - L1PA7 LINE L1 -3 6151 12 4190 187 13 6 chr3 28391793 28392639 -189644519 - L1PA13 LINE L1 -1432 4714 3863 381 335 62 22 chr3 28393978 28394202 -189642956 + MIR SINE MIR 20 252 -10 561 314 76 13 chr3 28394240 28394660 -189642498 - MLT1L LTR MaLR -14 601 90 2360 78 0 16 chr3 28395418 28395726 -189641432 - AluY SINE Alu -8 303 1 3495 185 25 20 chr3 28396994 28397637 -189639521 + L1MA2 LINE L1 16 661 -6904 * 8379 187 68 52 chr3 28397629 28397722 -189639436 + L1MA2 LINE L1 2131 2221 -5502 2404 84 3 3 chr3 28397722 28398031 -189639127 + AluSg SINE Alu 1 309 -1 8379 187 68 52 chr3 28398031 28401600 -189635558 + L1MA2 LINE L1 2221 5733 -1990 2947 80 78 2 chr3 28401600 28401968 -189635190 + MLT2A1 LTR ERVL 1 405 -39 198 0 0 0 chr3 28401968 28401990 -189635168 + (TA)n Simple_repeat Simple_repeat 2 23 0 2947 80 78 2 chr3 28401990 28402034 -189635124 + MLT2A1 LTR ERVL 405 444 0 768 108 122 29 chr3 28402034 28402128 -189635030 + MLT2A1 LTR ERVL 293 406 -38 654 49 0 0 chr3 28402128 28402210 -189634948 + (TA)n Simple_repeat Simple_repeat 2 83 0 768 108 122 29 chr3 28402210 28402254 -189634904 + MLT2A1 LTR ERVL 406 444 0 8379 187 68 52 chr3 28402254 28403082 -189634076 + L1MA2 LINE L1 5733 6547 -1176 1937 158 10 3 chr3 28403082 28403379 -189633779 + AluJb SINE Alu 1 299 -13 8379 187 68 52 chr3 28403379 28404145 -189633013 + L1MA2 LINE L1 6547 7605 -118 2281 119 22 17 chr3 28404145 28404506 -189632652 + THE1C LTR MaLR 1 363 -12 826 98 25 0 chr3 28404511 28404633 -189632525 + L1MA2 LINE L1 7599 7723 0 432 338 65 29 chr3 28405100 28405378 -189631780 + LTR16C LTR ERVL 202 489 -2 228 260 78 26 chr3 28405484 28405561 -189631597 - MIR SINE MIR -131 131 51 240 200 83 161 chr3 28405660 28405840 -189631318 - LTR27 LTR ERV1 0 636 471 * 1577 163 122 11 chr3 28405838 28406184 -189630974 - LTR28 LTR ERV1 -675 345 1 15246 156 40 30 chr3 28406186 28411113 -189626045 - LTR28-int LTR ERV1 -1 6995 632 1041 129 138 45 chr3 28411115 28411339 -189625819 - LTR8A LTR ERV1 -481 246 2 1850 193 58 13 chr3 28411829 28412208 -189624950 + MSTD LTR MaLR 1 396 0 330 366 37 15 chr3 28412346 28412480 -189624678 - L2 LINE L2 -7 3265 3129 234 0 0 0 chr3 28413729 28413755 -189623403 + (T)n Simple_repeat Simple_repeat 1 26 0 249 227 86 125 chr3 28415012 28415140 -189622018 + MIR SINE MIR 5 127 -135 212 373 161 7 chr3 28415455 28415827 -189621331 + L2 LINE L2 1297 1737 -1577 3744 90 4 6 chr3 28415827 28416339 -189620819 - MER9 LTR ERVK 0 511 1 212 373 161 7 chr3 28416339 28416371 -189620787 + L2 LINE L2 1737 1763 -1551 590 290 160 31 chr3 28416407 28416700 -189620458 - MER102b DNA MER1_type 0 341 11 352 186 339 8 chr3 28416853 28416971 -189620187 - MER5A DNA MER1_type -29 160 4 371 319 59 15 chr3 28418100 28418235 -189618923 - MIR SINE MIR -108 154 14 1940 56 144 7 chr3 28418418 28418688 -189618470 - AluY SINE Alu -3 308 2 722 275 39 0 chr3 28418757 28418939 -189618219 - MER5A DNA MER1_type 0 189 1 454 261 35 45 chr3 28419168 28419367 -189617791 - L1ME LINE L1 -464 5657 5461 22 0 0 0 chr3 28421316 28421338 -189615820 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr3 28422022 28422056 -189615102 + AT_rich Low_complexity Low_complexity 1 34 0 269 145 58 29 chr3 28422058 28422127 -189615031 - MER4-int LTR ERV1 -4975 1623 1553 3239 91 11 7 chr3 28422128 28422591 -189614567 - L1PA11 LINE L1 -2 6172 5708 5048 195 47 16 chr3 28422948 28424324 -189612834 - L1MC1 LINE L1 -15 6598 5187 2080 166 66 20 chr3 28424317 28424905 -189612253 - L1MC1 LINE L1 -4166 2260 1554 * 878 185 82 108 chr3 28424905 28425335 -189611823 - MLT1A1 LTR MaLR 0 365 1 623 150 8 53 chr3 28425336 28425469 -189611689 - L1MC1 LINE L1 -4869 1557 1431 2182 107 18 18 chr3 28425469 28425806 -189611352 + THE1C LTR MaLR 1 337 -38 7591 149 19 51 chr3 28425811 28427270 -189609888 - L1MC1 LINE L1 -4995 1431 21 1669 159 18 18 chr3 28427562 28427839 -189609319 - AluJo SINE Alu -19 293 17 259 269 52 30 chr3 28428122 28428256 -189608902 - L1M4 LINE L1 -3141 3005 2869 29 78 0 0 chr3 28428283 28428347 -189608811 + AT_rich Low_complexity Low_complexity 1 64 0 769 229 38 0 chr3 28428393 28428550 -189608608 + FRAM SINE Alu 11 173 -3 362 252 62 55 chr3 28428578 28428852 -189608306 - L1M4 LINE L1 -3594 2552 2277 2044 113 0 63 chr3 28428959 28429277 -189607881 - AluSc SINE Alu -11 298 1 23 33 0 0 chr3 28429279 28429309 -189607849 + AT_rich Low_complexity Low_complexity 1 30 0 225 196 0 0 chr3 28429495 28429551 -189607607 + (TA)n Simple_repeat Simple_repeat 2 57 0 1474 207 4 4 chr3 28429750 28430025 -189607133 + AluJo SINE Alu 11 285 -27 1519 147 58 0 chr3 28430190 28430448 -189606710 + MER50 LTR ERV1 1 273 -461 380 293 167 0 chr3 28433099 28433273 -189603885 + L2 LINE L2 2598 2800 -514 373 212 104 39 chr3 28433284 28433478 -189603680 - MER58 DNA MER1_type -1 2419 10 485 331 60 62 chr3 28433494 28433926 -189603232 + L2 LINE L2 2815 3245 -68 380 283 118 72 chr3 28434527 28434847 -189602311 + L1ME4a LINE L1 5655 5995 -126 2316 123 30 6 chr3 28434847 28435213 -189601945 - THE1C LTR MaLR 0 375 1 380 283 118 72 chr3 28435213 28435267 -189601891 + L1ME4a LINE L1 5995 6045 -76 27 29 0 0 chr3 28435297 28435331 -189601827 + AT_rich Low_complexity Low_complexity 1 34 0 426 20 0 0 chr3 28437768 28437819 -189599339 + (CA)n Simple_repeat Simple_repeat 1 51 0 1370 174 41 10 chr3 28438192 28438485 -189598673 + L1MA9 LINE L1 5989 6290 -22 21 0 0 0 chr3 28438558 28438579 -189598579 + AT_rich Low_complexity Low_complexity 1 21 0 5673 177 32 18 chr3 28439723 28440750 -189596408 + L1PA13 LINE L1 1 1042 -5745 9553 229 19 31 chr3 28440758 28442377 -189594781 + L1PA13 LINE L1 1706 3331 -3466 401 41 0 0 chr3 28442377 28442426 -189594732 + MADE1 DNA Mariner 1 49 -31 9553 229 19 31 chr3 28442426 28443352 -189593806 + L1PA13 LINE L1 3331 4267 -2530 814 163 52 77 chr3 28443378 28443611 -189593547 + L1PA16 LINE L1 5940 6166 0 929 216 10 0 chr3 28443737 28443936 -189593222 - L1MB3 LINE L1 -113 6070 5870 4448 126 5 23 chr3 28444638 28445384 -189591774 - L1PA15 LINE L1 -7 6158 5426 845 208 25 95 chr3 28447350 28447591 -189589567 + MER58A DNA MER1_type 1 224 0 247 326 59 112 chr3 28447595 28448068 -189589090 - L2 LINE L2 0 3272 2825 424 291 127 14 chr3 28448897 28449117 -189588041 - MIR SINE MIR 0 262 18 434 158 0 0 chr3 28449602 28449684 -189587474 - L1 LINE L1 -921 6644 6563 17324 182 56 32 chr3 28449785 28452658 -189584500 - L1 LINE L1 -2671 4894 1857 207 0 0 0 chr3 28452658 28452681 -189584477 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 17324 182 56 32 chr3 28452681 28454565 -189582593 - L1 LINE L1 -5708 1857 19 2076 139 0 26 chr3 28455284 28455629 -189581529 - L1PA16 LINE L1 -9 6157 5822 1187 126 0 11 chr3 28456111 28456316 -189580842 - L1PA15 LINE L1 -199 5962 5769 5573 106 16 7 chr3 28456325 28457186 -189579972 - L1PB2 LINE L1 -2 6865 5997 9020 118 24 8 chr3 28457297 28459266 -189577892 - L1PB2 LINE L1 -4020 2843 636 1105 160 5 0 chr3 28459271 28459465 -189577693 - L1PB2 LINE L1 -6668 195 1 213 94 0 0 chr3 28460085 28460117 -189577041 + (ATG)n Simple_repeat Simple_repeat 3 34 0 815 171 18 6 chr3 28461505 28461669 -189575489 - L1MA10 LINE L1 0 6334 6169 207 0 0 0 chr3 28461793 28461816 -189575342 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 386 302 0 10 chr3 28461823 28461919 -189575239 - L2 LINE L2 -22 3291 3197 253 128 0 0 chr3 28463391 28463430 -189573728 + L1MC4a LINE L1 5625 5663 -458 460 341 28 8 chr3 28463485 28463740 -189573418 + MIR SINE MIR 3 262 0 361 286 101 55 chr3 28463743 28463942 -189573216 + L1MC4a LINE L1 5687 5894 -1914 237 368 0 0 chr3 28464144 28464220 -189572938 + MIR SINE MIR 110 185 -77 465 261 71 38 chr3 28464315 28464499 -189572659 + L2 LINE L2 3122 3311 -2 524 274 25 60 chr3 28464729 28464930 -189572228 - MIR SINE MIR -64 198 5 22 56 0 0 chr3 28465072 28465108 -189572050 + AT_rich Low_complexity Low_complexity 1 36 0 327 274 124 65 chr3 28465240 28465463 -189571695 + L1ME LINE L1 5261 5469 -652 2049 130 7 3 chr3 28465463 28465764 -189571394 + AluSg SINE Alu 1 302 -8 327 274 124 65 chr3 28465764 28465974 -189571184 + L1ME LINE L1 5469 5720 -401 27 49 0 0 chr3 28466022 28466063 -189571095 + AT_rich Low_complexity Low_complexity 1 41 0 2769 185 34 17 chr3 28466454 28467104 -189570054 + L1MA9 LINE L1 5543 6291 0 1002 298 81 24 chr3 28467737 28468120 -189569038 - MLT1I LTR MaLR 0 409 5 278 345 72 22 chr3 28468229 28468368 -189568790 - L2 LINE L2 -11 3261 3116 618 262 0 14 chr3 28469067 28469208 -189567950 - MLT1I LTR MaLR -1 408 270 196 157 59 0 chr3 28469558 28469609 -189567549 + CT-rich Low_complexity Low_complexity 4 57 0 281 232 14 14 chr3 28469625 28469694 -189567464 + CT-rich Low_complexity Low_complexity 4 72 0 299 284 216 8 chr3 28469832 28469966 -189567192 + MIR3 SINE MIR 44 205 -3 2334 84 43 3 chr3 28470706 28471053 -189566105 - L1MA2 LINE L1 -5 6299 5939 39 22 0 0 chr3 28471444 28471490 -189565668 + AT_rich Low_complexity Low_complexity 1 46 0 2147 118 0 0 chr3 28471588 28471884 -189565274 - AluSg SINE Alu -14 296 1 33 56 0 0 chr3 28472009 28472063 -189565095 + AT_rich Low_complexity Low_complexity 1 54 0 1926 265 35 21 chr3 28472388 28472955 -189564203 + MLT1G LTR MaLR 1 575 -15 836 234 54 0 chr3 28474090 28474274 -189562884 + MER58A DNA MER1_type 31 224 0 255 70 0 93 chr3 28474560 28474603 -189562555 - LTR8 LTR ERV1 0 691 653 2026 224 128 24 chr3 28474603 28475260 -189561898 - MER50 LTR ERV1 0 734 10 * 3001 169 30 81 chr3 28475254 28475958 -189561200 - LTR8 LTR ERV1 -23 668 1 189 308 0 0 chr3 28476598 28476650 -189560508 + L2 LINE L2 3220 3271 -1 257 263 0 38 chr3 28477312 28477392 -189559766 + Charlie7 DNA MER1_type 112 188 -2424 22 0 0 0 chr3 28478401 28478423 -189558735 + AT_rich Low_complexity Low_complexity 1 22 0 222 128 0 0 chr3 28478465 28478504 -189558654 + (CA)n Simple_repeat Simple_repeat 2 40 0 236 253 0 77 chr3 28478823 28478914 -189558244 + Charlie7 DNA MER1_type 112 195 -2417 660 261 143 28 chr3 28478920 28479305 -189557853 + MLT1J2 LTR MaLR 3 446 0 564 295 98 30 chr3 28479378 28479747 -189557411 + Charlie7 DNA MER1_type 283 676 -1936 267 364 65 9 chr3 28480368 28480585 -189556573 - L1ME LINE L1 -298 5823 5595 26 64 0 0 chr3 28480617 28480664 -189556494 + AT_rich Low_complexity Low_complexity 1 47 0 403 207 19 4 chr3 28480722 28480836 -189556322 - L1MC4 LINE L1 0 8042 7883 180 0 0 0 chr3 28482046 28482066 -189555092 + (T)n Simple_repeat Simple_repeat 1 20 0 9302 63 10 114 chr3 28482289 28483837 -189553321 - SVA Other Other 0 1386 1 26 30 0 0 chr3 28483904 28483937 -189553221 + AT_rich Low_complexity Low_complexity 1 33 0 833 276 45 98 chr3 28484271 28484760 -189552398 - MLT1J LTR MaLR -43 468 6 368 254 51 35 chr3 28484770 28484967 -189552191 - HAL1 LINE L1 -254 2253 2054 272 231 15 15 chr3 28485038 28485103 -189552055 + MLT1J LTR MaLR 94 158 -353 238 263 29 88 chr3 28485193 28485330 -189551828 + MLT1J LTR MaLR 383 511 0 2348 107 0 0 chr3 28485572 28485881 -189551277 - AluSg SINE Alu -1 309 1 21 36 0 0 chr3 28485939 28485967 -189551191 + AT_rich Low_complexity Low_complexity 1 28 0 980 189 22 0 chr3 28486507 28486692 -189550466 + MER5A DNA MER1_type 1 189 0 24 0 0 0 chr3 28486910 28486934 -189550224 + AT_rich Low_complexity Low_complexity 1 24 0 370 206 0 14 chr3 28487015 28487088 -189550070 - MER52A LTR ERV1 0 1755 1684 * 3742 183 55 93 chr3 28487080 28488324 -189548834 - MER52A LTR ERV1 -559 1196 1 236 370 120 0 chr3 28490188 28490296 -189546862 - L2 LINE L2 -6 3266 3146 398 200 14 21 chr3 28490341 28490481 -189546677 + (TAGA)n Simple_repeat Simple_repeat 4 142 0 12136 168 43 6 chr3 28490655 28492900 -189544258 - L1PBa LINE L1 -4534 2329 3 624 199 9 8 chr3 28492909 28493040 -189544118 - L1P5 LINE L1 -374 6485 6354 347 174 23 0 chr3 28493028 28493114 -189544044 - L1P5 LINE L1 -961 5888 5801 * 8399 251 14 8 chr3 28493133 28495487 -189541671 - L1P5 LINE L1 -1905 4944 2576 322 182 52 0 chr3 28495486 28495563 -189541595 - L1P5 LINE L1 -4681 2168 2088 * 1022 289 111 13 chr3 28495690 28496085 -189541073 + L2 LINE L2 2880 3313 0 417 186 23 124 chr3 28496212 28496341 -189540817 - MLT1H LTR MaLR -51 498 383 4894 221 47 19 chr3 28499246 28500867 -189536291 - L1 LINE L1 -2781 4067 2321 365 206 55 0 chr3 28501036 28501109 -189536049 + MLT1F LTR MaLR 1 77 -465 304 303 55 9 chr3 28501115 28501224 -189535934 + MLT1F LTR MaLR 28 141 -401 218 268 73 12 chr3 28501354 28501436 -189535722 + MIR SINE MIR 58 144 -64 2248 88 15 6 chr3 28501757 28502085 -189535073 - L1PB1 LINE L1 0 6151 5821 4528 233 29 12 chr3 28502230 28503494 -189533664 - L1MDa LINE L1 -1854 4686 3402 926 158 0 0 chr3 28503662 28503826 -189533332 - L1PA15-16 LINE L1 -4497 2352 2189 6182 152 62 11 chr3 28503882 28504955 -189532203 - L1PA15-16 LINE L1 -4830 2019 893 252 343 28 56 chr3 28504998 28505141 -189532017 - MER91C DNA MER1_type 0 140 2 566 258 31 13 chr3 28505435 28505594 -189531564 + MIR SINE MIR 74 235 -27 899 199 49 77 chr3 28505676 28506205 -189530953 - L1MDa LINE L1 -3694 2846 2329 1119 127 6 6 chr3 28506488 28506654 -189530504 - AluSg/x SINE Alu -13 299 134 2285 109 0 0 chr3 28506654 28506956 -189530202 - AluSc SINE Alu -7 302 1 395 228 53 0 chr3 28507187 28507301 -189529857 - L1ME3A LINE L1 -223 5947 5828 391 277 34 6 chr3 28507297 28507512 -189529646 + L1M2 LINE L1 5282 5517 -653 * 952 68 0 0 chr3 28507716 28507834 -189529324 - L1PA7 LINE L1 -8 6146 6029 378 327 171 18 chr3 28507836 28508117 -189529041 + L1ME3A LINE L1 5513 5836 -334 198 167 0 0 chr3 28508614 28508650 -189528508 + T-rich Low_complexity Low_complexity 1 36 0 253 212 15 45 chr3 28509467 28509533 -189527625 + MIR3 SINE MIR 104 167 -41 186 43 0 0 chr3 28509585 28509608 -189527550 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1777 83 6 147 chr3 28509609 28509936 -189527222 - AluSp SINE Alu -32 281 1 328 325 85 32 chr3 28510622 28510810 -189526348 - L1 LINE L1 -2875 3271 3074 186 133 0 0 chr3 28510817 28510847 -189526311 + (CCCCCT)n Simple_repeat Simple_repeat 6 35 0 38 22 0 0 chr3 28510856 28510901 -189526257 + AT_rich Low_complexity Low_complexity 1 45 0 192 79 0 53 chr3 28510931 28510969 -189526189 + (GAAAA)n Simple_repeat Simple_repeat 2 37 0 397 291 97 11 chr3 28511188 28511363 -189525795 - MIR SINE MIR -55 207 18 434 158 0 0 chr3 28511848 28511930 -189525228 - L1 LINE L1 -921 5225 5144 705 272 50 7 chr3 28512031 28512310 -189524848 - L1 LINE L1 -2671 3475 3185 9617 223 12 14 chr3 28712941 28716133 -189321025 - L1PA15 LINE L1 0 6165 2947 404 350 45 45 chr3 28716277 28716936 -189320222 + HERVL18 LTR ERVL 1483 1983 -3360 1312 129 0 80 chr3 28716999 28717224 -189319934 + AluSx SINE Alu 1 207 -105 385 342 80 49 chr3 28717318 28718429 -189318729 + HERVL18 LTR ERVL 2314 3616 -2431 297 339 34 43 chr3 28718708 28719035 -189318123 + HERVL18 LTR ERVL 3760 4083 -1260 302 377 7 0 chr3 28719701 28719839 -189317319 + MER4B-int LTR ERV1 5631 5769 -1353 688 360 30 7 chr3 28720206 28720629 -189316529 + MER4B-int LTR ERV1 6256 7297 -452 531 189 0 54 chr3 28720831 28720942 -189316216 + MER4B-int LTR ERV1 5971 6075 -683 385 258 137 8 chr3 28721196 28721320 -189315838 + LTR47A LTR ERVL 261 400 -52 298 315 35 21 chr3 28721590 28721755 -189315403 - MIR SINE MIR -57 205 37 24 0 0 0 chr3 28722487 28722511 -189314647 + AT_rich Low_complexity Low_complexity 1 24 0 243 0 0 0 chr3 28723104 28723131 -189314027 + (TG)n Simple_repeat Simple_repeat 2 28 0 2314 233 114 34 chr3 28724209 28725273 -189311885 - L1MC4a LINE L1 0 8036 6211 9716 194 38 20 chr3 28725559 28728565 -189308593 - L1MA4 LINE L1 -7 6475 3419 445 195 11 22 chr3 28728572 28728617 -189308541 - L1MA4 LINE L1 -4908 420 376 1479 140 171 27 chr3 28728617 28728945 -189308213 + THE1C LTR MaLR 1 375 0 445 195 11 22 chr3 28728945 28729164 -189307994 - L1MA4 LINE L1 -4952 376 1 34 0 0 0 chr3 28729345 28729379 -189307779 + AT_rich Low_complexity Low_complexity 1 34 0 667 293 43 116 chr3 28729440 28729552 -189307606 - LTR16C LTR ERVL -33 458 339 2058 134 30 33 chr3 28729552 28729917 -189307241 + THE1B LTR MaLR 1 364 0 667 293 43 116 chr3 28729917 28730244 -189306914 - LTR16C LTR ERVL -152 339 51 181 336 21 86 chr3 28730972 28731066 -189306092 - L2 LINE L2 0 3313 3229 2600 49 0 0 chr3 28731066 28731370 -189305788 + AluY SINE Alu 1 304 -7 181 336 21 86 chr3 28731370 28731415 -189305743 - L2 LINE L2 -84 3229 3183 2114 81 0 18 chr3 28731787 28732071 -189305087 - AluY SINE Alu -15 296 18 5208 193 25 3 chr3 28732481 28734328 -189302830 + L1PA16 LINE L1 4269 6156 -10 521 222 6 80 chr3 28734611 28734773 -189302385 + MLT1D LTR MaLR 1 150 -355 1278 213 4 12 chr3 28734815 28735069 -189302089 + MLT1D LTR MaLR 252 503 -2 22 56 0 0 chr3 28735256 28735292 -189301866 + AT_rich Low_complexity Low_complexity 1 36 0 571 248 20 13 chr3 28735751 28735900 -189301258 + L1MC4 LINE L1 6862 7011 -1031 324 212 61 0 chr3 28735943 28736042 -189301116 + L1MC4a LINE L1 7137 7241 -567 13588 148 19 19 chr3 28736044 28738417 -189298741 + Tigger1 DNA MER2_type 1 2372 -46 747 240 57 47 chr3 28738518 28738898 -189298260 + L1MC4 LINE L1 7604 8037 -5 362 313 205 40 chr3 28738943 28739066 -189298092 + L1ME3 LINE L1 5476 5577 -585 2218 216 8 31 chr3 28739066 28739580 -189297578 + MLT1D LTR MaLR 1 502 -3 362 313 205 40 chr3 28739580 28739807 -189297351 + L1ME3 LINE L1 5577 5884 -278 26 0 0 0 chr3 28740589 28740615 -189296543 + AT_rich Low_complexity Low_complexity 1 26 0 2310 187 37 0 chr3 28741307 28741714 -189295444 + MSTA LTR MaLR 7 428 0 201 39 0 0 chr3 28741756 28741782 -189295376 + (TG)n Simple_repeat Simple_repeat 1 26 0 22 70 0 0 chr3 28742567 28742610 -189294548 + AT_rich Low_complexity Low_complexity 1 43 0 13722 157 11 21 chr3 28742675 28744335 -189292823 - Tigger1 DNA MER2_type -5 2413 781 204 67 0 0 chr3 28744335 28744365 -189292793 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 13722 157 11 21 chr3 28744365 28745137 -189292021 - Tigger1 DNA MER2_type -1637 781 3 2321 130 25 0 chr3 28745228 28745583 -189291575 + THE1B LTR MaLR 1 364 0 31 44 0 0 chr3 28746507 28746552 -189290606 + AT_rich Low_complexity Low_complexity 1 45 0 515 225 7 94 chr3 28746643 28746781 -189290377 + MLT1E1 LTR MaLR 1 126 -528 266 311 135 14 chr3 28747895 28748043 -189289115 + L2 LINE L2 3147 3312 -1 184 278 103 62 chr3 28748339 28748436 -189288722 - MIR SINE MIR -44 218 118 861 237 0 0 chr3 28749189 28749345 -189287813 + L1MDa LINE L1 20 175 -6365 * 1482 282 83 18 chr3 28749340 28750102 -189287056 + L1M4 LINE L1 4084 4894 -1252 23 0 0 0 chr3 28750110 28750133 -189287025 + AT_rich Low_complexity Low_complexity 1 23 0 397 93 0 0 chr3 28750651 28750705 -189286453 - MSTD LTR MaLR 0 457 404 23 0 0 0 chr3 28750706 28750729 -189286429 + AT_rich Low_complexity Low_complexity 1 23 0 3075 54 0 0 chr3 28750729 28751115 -189286043 - L1PA5 LINE L1 0 6154 5769 3626 21 0 0 chr3 28751117 28751553 -189285605 + L1P LINE L1 4927 5362 -784 1826 181 63 11 chr3 28751553 28751917 -189285241 - MSTD LTR MaLR -13 383 1 298 93 0 0 chr3 28751918 28751961 -189285197 - Charlie5 DNA MER1_type -55 2557 2515 27257 128 13 76 chr3 28751961 28757297 -189279861 - L1P LINE L1 -1149 4997 2 441 271 144 6 chr3 28757337 28757495 -189279663 - MER5A DNA MER1_type -1 188 6 207 313 86 47 chr3 28757498 28757626 -189279532 - MER5A DNA MER1_type -11 178 46 * 228 275 116 43 chr3 28757513 28757651 -189279507 + MER5A DNA MER1_type 36 183 -6 333 0 0 0 chr3 28758022 28758059 -189279099 + (TG)n Simple_repeat Simple_repeat 1 37 0 640 103 32 48 chr3 28758317 28758402 -189278756 + L1PA13 LINE L1 5098 5182 -964 180 0 0 0 chr3 28758402 28758422 -189278736 + (CAA)n Simple_repeat Simple_repeat 2 21 0 640 103 32 48 chr3 28758422 28758462 -189278696 + L1PA13 LINE L1 5182 5221 -925 * 1954 93 5 0 chr3 28758459 28758852 -189278306 + L1PA13 LINE L1 5679 6157 -6 309 111 0 0 chr3 28758857 28758911 -189278247 + L1MA7 LINE L1 6237 6290 -1 1036 231 46 10 chr3 28759326 28759629 -189277529 + L1ME2 LINE L1 5708 6021 -143 281 191 0 96 chr3 28759661 28759755 -189277403 - L1MC4 LINE L1 -1339 6703 6619 231 232 0 53 chr3 28759673 28759768 -189277390 + L1MC4 LINE L1 6614 6703 -1339 * 254 206 14 0 chr3 28759773 28759846 -189277312 + (TA)n Simple_repeat Simple_repeat 1 74 0 227 259 0 24 chr3 28759853 28759938 -189277220 + L1MC4 LINE L1 6614 6696 -1346 369 212 40 30 chr3 28760918 28761017 -189276141 + MIR SINE MIR 90 189 -73 246 156 0 0 chr3 28762351 28762396 -189274762 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 1043 72 7 0 chr3 28762527 28762665 -189274493 - L1PA10 LINE L1 -9 6159 6021 18535 176 29 27 chr3 28763816 28771512 -189265646 + L1MA2 LINE L1 15 7723 0 2724 10 0 16 chr3 28771764 28772078 -189265080 + AluYb8 SINE Alu 1 309 -9 397 382 41 0 chr3 28772179 28772399 -189264759 + MIR SINE MIR 31 259 -3 22 94 0 0 chr3 28772447 28772511 -189264647 + AT_rich Low_complexity Low_complexity 1 64 0 300 322 98 58 chr3 28773553 28773963 -189263195 - L1ME LINE L1 -336 5785 5360 1324 198 68 67 chr3 28774054 28774622 -189262536 - MER67C LTR ERV1 0 514 1 5170 264 31 20 chr3 28775230 28778316 -189258842 + L1PA13 LINE L1 2 3566 -3231 245 339 103 0 chr3 28779053 28779218 -189257940 + MIR SINE MIR 80 261 -1 2058 115 7 3 chr3 28779543 28779847 -189257311 - AluSx SINE Alu -7 305 1 252 0 0 0 chr3 28780041 28780069 -189257089 + (TG)n Simple_repeat Simple_repeat 1 28 0 356 250 29 0 chr3 28780114 28780218 -189256940 - L1ME3A LINE L1 -222 5948 5842 1121 300 109 3 chr3 28780341 28780718 -189256440 + LTR16A LTR ERVL 34 450 0 209 180 20 0 chr3 28781544 28781594 -189255564 + (CA)n Simple_repeat Simple_repeat 2 52 0 281 265 0 59 chr3 28783513 28783581 -189253577 + MLT1J2 LTR MaLR 387 450 0 22 0 0 0 chr3 28783936 28783958 -189253200 + AT_rich Low_complexity Low_complexity 1 22 0 292 306 57 16 chr3 28784208 28784332 -189252826 - L2 LINE L2 0 3313 3185 417 275 119 50 chr3 28784487 28784521 -189252637 - MIR SINE MIR -9 253 223 729 195 97 31 chr3 28784521 28784716 -189252442 + MER3 DNA MER1_type 2 209 0 417 275 119 50 chr3 28784716 28784899 -189252259 - MIR SINE MIR -39 223 21 233 343 0 0 chr3 28785506 28785576 -189251582 + MLT1J LTR MaLR 110 179 -332 189 380 83 0 chr3 28786601 28786709 -189250449 - L2 LINE L2 -5 3267 3151 980 35 28 7 chr3 28787299 28787440 -189249718 + (GAAA)n Simple_repeat Simple_repeat 2 145 0 1144 139 5 45 chr3 28787494 28787695 -189249463 + AluSx SINE Alu 1 193 -119 459 298 0 8 chr3 28787770 28787894 -189249264 - MLT1E LTR MaLR -470 123 1 21 36 0 0 chr3 28790121 28790149 -189247009 + AT_rich Low_complexity Low_complexity 1 28 0 717 293 112 48 chr3 28790515 28791045 -189246113 - MLT1G1 LTR MaLR 0 595 1 21 0 0 0 chr3 28791717 28791738 -189245420 + AT_rich Low_complexity Low_complexity 1 21 0 363 290 148 23 chr3 28792249 28792425 -189244733 + L2 LINE L2 2267 2464 -850 5722 122 4 2 chr3 28792552 28793799 -189243359 - L1PA15 LINE L1 0 6165 4897 1113 177 58 8 chr3 28793799 28794042 -189243116 - L1PA15 LINE L1 -3500 2646 2392 1156 152 22 0 chr3 28794678 28794862 -189242296 - MER6B DNA MER2_type -19 191 4 509 324 89 22 chr3 28797529 28797844 -189239314 + MLT1J1 LTR MaLR 1 336 -110 994 204 95 0 chr3 28798399 28798663 -189238495 + MER33 DNA MER1_type 32 320 -4 193 290 65 0 chr3 28798969 28799031 -189238127 + MIR SINE MIR 81 146 -116 39 0 0 0 chr3 28799867 28799906 -189237252 + AT_rich Low_complexity Low_complexity 1 39 0 491 355 35 27 chr3 28800316 28800572 -189236586 + MIR SINE MIR 5 262 0 563 293 99 9 chr3 28801253 28801485 -189235673 + MIR SINE MIR 9 261 -1 202 320 25 66 chr3 28801520 28801642 -189235516 + L3 LINE CR1 1250 1366 -211 296 307 98 7 chr3 28801681 28801834 -189235324 + MIR SINE MIR 86 252 -10 276 375 19 0 chr3 28801824 28801928 -189235230 - L3 LINE CR1 -27 1550 1445 * 411 276 61 33 chr3 28801984 28802165 -189234993 + MIR SINE MIR 63 248 -14 4042 118 21 6 chr3 28802267 28802893 -189234265 + MER41B LTR ERV1 1 635 0 964 251 7 39 chr3 28802894 28803177 -189233981 + L1M4 LINE L1 1 274 -6268 763 209 32 51 chr3 28803295 28803490 -189233668 + L1M4 LINE L1 3387 3577 -3067 2025 130 7 0 chr3 28803490 28803791 -189233367 + AluSq SINE Alu 1 303 -10 763 209 32 51 chr3 28803791 28803848 -189233310 + L1M4 LINE L1 3577 3634 -3010 29 0 0 0 chr3 28805214 28805243 -189231915 + AT_rich Low_complexity Low_complexity 1 29 0 297 330 26 0 chr3 28807085 28807200 -189229958 - L2 LINE L2 0 3313 3196 327 289 128 22 chr3 28807557 28807737 -189229421 + HAL1 LINE L1 13 211 -2296 608 245 104 61 chr3 28807781 28808320 -189228838 + L1MC5 LINE L1 7330 7891 -70 2293 194 30 10 chr3 28808851 28809355 -189227803 + Charlie5 DNA MER1_type 1 514 -2098 4921 166 83 77 chr3 28809373 28809867 -189227291 + L1MA8 LINE L1 3943 4433 -1858 2164 88 0 7 chr3 28809867 28810185 -189226973 + AluY SINE Alu 1 316 0 4921 166 83 77 chr3 28810185 28810709 -189226449 + L1MA8 LINE L1 4433 4953 -1338 2025 103 4 0 chr3 28810709 28810981 -189226177 + AluSx SINE Alu 1 273 -39 4921 166 83 77 chr3 28810981 28811232 -189225926 + L1MA8 LINE L1 4953 5201 -1090 3051 188 5 2 chr3 28811232 28811807 -189225351 + L1PA16 LINE L1 5581 6157 -9 4921 166 83 77 chr3 28811807 28812401 -189224757 + L1MA8 LINE L1 5201 5814 -477 1070 173 54 15 chr3 28812401 28812661 -189224497 + L1MA8 LINE L1 6019 6288 -3 4400 196 83 8 chr3 28812982 28814815 -189222343 + Charlie5 DNA MER1_type 644 2624 0 551 329 14 19 chr3 28815725 28815935 -189221223 + MLT1J LTR MaLR 1 209 -302 497 333 71 87 chr3 28816895 28816906 -189220252 - L2 LINE L2 -5 3267 3257 333 0 0 0 chr3 28816906 28816943 -189220215 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 497 333 71 87 chr3 28816943 28817309 -189219849 - L2 LINE L2 -15 3257 2896 2158 151 32 17 chr3 28817349 28817760 -189219398 + MER61C LTR ERV1 14 430 -4 260 327 132 59 chr3 28817777 28818355 -189218803 - L2 LINE L2 -449 2865 2246 289 230 43 22 chr3 28818359 28818480 -189218678 + (TA)n Simple_repeat Simple_repeat 1 127 -15 1613 181 57 18 chr3 28818480 28818811 -189218347 + MER7A DNA MER2_type 5 346 0 289 230 43 22 chr3 28818811 28818828 -189218330 + (TA)n Simple_repeat Simple_repeat 127 142 0 210 143 0 0 chr3 28818861 28818896 -189218262 + (CA)n Simple_repeat Simple_repeat 2 36 0 334 214 0 0 chr3 28818914 28818970 -189218188 - MLT1A1 LTR MaLR 0 365 310 327 49 0 0 chr3 28819074 28819115 -189218043 + (CA)n Simple_repeat Simple_repeat 2 42 0 1105 209 50 8 chr3 28819119 28819358 -189217800 - MLT1A1 LTR MaLR 0 365 117 222 315 27 41 chr3 28819438 28819511 -189217647 - L2 LINE L2 0 3313 3242 1370 267 108 109 chr3 28819529 28819934 -189217224 - L2 LINE L2 -228 3085 2681 366 289 11 0 chr3 28819934 28820024 -189217134 + MER81 DNA DNA 15 105 -9 1370 267 108 109 chr3 28820024 28820484 -189216674 - L2 LINE L2 -632 2681 2141 534 329 58 8 chr3 28821006 28821249 -189215909 - L2 LINE L2 -1278 2036 1782 628 93 37 19 chr3 28821253 28821360 -189215798 - L1MC3 LINE L1 -10 7775 7667 22 56 0 0 chr3 28822069 28822105 -189215053 + AT_rich Low_complexity Low_complexity 1 36 0 286 318 36 9 chr3 28823751 28823861 -189213297 + LTR16A LTR ERVL 108 220 -230 239 345 0 0 chr3 28824075 28824159 -189212999 - Charlie8 DNA MER1_type -2217 200 117 188 451 0 0 chr3 28824330 28824432 -189212726 - MIR SINE MIR -115 147 46 382 248 0 45 chr3 28825638 28825771 -189211387 + T-rich Low_complexity Low_complexity 4 130 0 1127 160 0 0 chr3 28826720 28826920 -189210238 + L1PB1 LINE L1 1 200 -6663 14211 193 34 15 chr3 28826922 28832554 -189204604 + L1PB1 LINE L1 636 6510 -357 288 0 0 0 chr3 28832554 28832586 -189204572 + (CA)n Simple_repeat Simple_repeat 2 33 0 14211 193 34 15 chr3 28832586 28832951 -189204207 + L1PB1 LINE L1 6510 6867 0 24 100 0 0 chr3 28833298 28833378 -189203780 + AT_rich Low_complexity Low_complexity 1 80 0 840 217 88 0 chr3 28833399 28833616 -189203542 + L1MB8 LINE L1 5769 6004 -174 1153 95 0 12 chr3 28833624 28833793 -189203365 - MLT2A2 LTR ERVL 0 453 287 1836 159 30 0 chr3 28833837 28834133 -189203025 - MLT2A2 LTR ERVL -148 305 1 3931 161 68 30 chr3 28834182 28835123 -189202035 - MER11C LTR ERVK 0 1071 1 612 156 23 8 chr3 28835125 28835253 -189201905 + L1MB8 LINE L1 6049 6178 0 2313 101 25 189 chr3 28835945 28836517 -189200641 + LTR12 LTR ERV1 5 482 -232 241 298 61 11 chr3 28837116 28837302 -189199856 - L1 LINE L1 -797 5349 5150 2058 195 37 24 chr3 28837329 28837790 -189199368 + L1MB8 LINE L1 5590 6056 -122 195 42 0 0 chr3 28838353 28838377 -189198781 + (T)n Simple_repeat Simple_repeat 1 24 0 473 199 55 165 chr3 28838380 28838700 -189198458 + LTR37A LTR ERV1 87 360 -66 2242 105 3 0 chr3 28838700 28839006 -189198152 - AluSx SINE Alu -5 307 1 473 199 55 165 chr3 28839006 28839067 -189198091 + LTR37A LTR ERV1 360 426 0 1816 159 30 24 chr3 28839584 28839918 -189197240 + MER1B DNA MER1_type 2 337 0 22 56 0 0 chr3 28839944 28839980 -189197178 + AT_rich Low_complexity Low_complexity 1 36 0 300 230 81 0 chr3 28840089 28840176 -189196982 - L1M4 LINE L1 -3799 2347 2254 273 376 141 12 chr3 28840232 28840650 -189196508 + L2 LINE L2 2490 2961 -353 34 0 0 0 chr3 28840837 28840871 -189196287 + AT_rich Low_complexity Low_complexity 1 34 0 226 241 0 0 chr3 28841117 28841175 -189195983 + (TA)n Simple_repeat Simple_repeat 1 58 0 613 159 0 37 chr3 28841401 28841508 -189195650 + FLAM_C SINE Alu 29 131 -12 301 291 89 38 chr3 28841802 28841960 -189195198 + L1ME4a LINE L1 5935 6100 -21 429 280 40 23 chr3 28842261 28842515 -189194643 + L2 LINE L2 1188 1522 -1792 249 333 73 34 chr3 28842751 28842928 -189194230 + L2 LINE L2 796 979 -2335 2206 321 128 21 chr3 28842929 28844483 -189192675 + L2 LINE L2 1593 3313 0 471 286 21 42 chr3 28844822 28845011 -189192147 + MIR SINE MIR 22 206 -56 186 333 10 73 chr3 28845293 28845389 -189191769 - MIR3 SINE MIR -11 197 108 649 0 123 0 chr3 28845402 28845483 -189191675 + L1PA4 LINE L1 6057 6147 -8 324 344 128 6 chr3 28845836 28846016 -189191142 - MIR SINE MIR -55 207 6 643 251 136 15 chr3 28846057 28846256 -189190902 - MER58A DNA MER1_type 0 224 2 1134 182 81 103 chr3 28846257 28846470 -189190688 + LTR37A LTR ERV1 40 241 -185 192 97 0 0 chr3 28846470 28846501 -189190657 + (CA)n Simple_repeat Simple_repeat 2 32 0 1134 182 81 103 chr3 28846501 28846683 -189190475 + LTR37A LTR ERV1 241 426 0 203 186 23 23 chr3 28847192 28847235 -189189923 - L3 LINE CR1 -5 1572 1530 192 135 0 0 chr3 28847241 28847278 -189189880 + (CAA)n Simple_repeat Simple_repeat 3 39 0 351 325 60 15 chr3 28847460 28847610 -189189548 - MIR SINE MIR -48 160 6 321 319 43 17 chr3 28847660 28847776 -189189382 - L3 LINE CR1 -127 1450 1332 5014 85 65 3 chr3 28848682 28849403 -189187755 + MER4E LTR ERV1 1 766 0 6387 113 90 51 chr3 28849403 28850545 -189186613 + MER4E-int LTR ERV1 1 1172 -5586 * 7850 141 78 27 chr3 28850542 28853111 -189184047 + MER4E-int LTR ERV1 1444 3977 -2781 4923 84 5 1 chr3 28853111 28853769 -189183389 + PABL_A LTR ERV1 1 660 0 7850 141 78 27 chr3 28853769 28853885 -189183273 + MER4E-int LTR ERV1 3977 4086 -2672 1720 133 65 19 chr3 28853882 28854489 -189182669 + MER4E-int LTR ERV1 4448 5226 -1532 * 6572 37 0 0 chr3 28854496 28855278 -189181880 + L1PA5 LINE L1 5353 6134 -20 7433 146 67 14 chr3 28855279 28856619 -189180539 + MER4E-int LTR ERV1 5235 6645 -113 198 0 0 0 chr3 28857180 28857202 -189179956 + (T)n Simple_repeat Simple_repeat 1 22 0 5557 71 20 7 chr3 28857482 28858238 -189178920 + MER4E LTR ERV1 1 766 0 797 230 62 81 chr3 28859890 28860325 -189176833 - L1MC5 LINE L1 -53 7908 7482 933 161 0 46 chr3 28860383 28860557 -189176601 + FRAM SINE Alu 1 163 -13 30 27 0 0 chr3 28860740 28860777 -189176381 + AT_rich Low_complexity Low_complexity 1 37 0 34 84 0 0 chr3 28860893 28860976 -189176182 + AT_rich Low_complexity Low_complexity 1 83 0 312 341 60 51 chr3 28861602 28861954 -189175204 - HAL1b LINE L1 -718 630 276 21 0 0 0 chr3 28861955 28861976 -189175182 + AT_rich Low_complexity Low_complexity 1 21 0 1969 289 81 17 chr3 28863229 28864368 -189172790 + L1ME3A LINE L1 4931 6146 -24 22 56 0 0 chr3 28864562 28864598 -189172560 + AT_rich Low_complexity Low_complexity 1 36 0 775 260 79 63 chr3 28864633 28865383 -189171775 + L1M4 LINE L1 2689 3450 -2696 22 56 0 0 chr3 28865714 28865750 -189171408 + AT_rich Low_complexity Low_complexity 1 36 0 334 305 123 44 chr3 28865756 28865821 -189171337 - MIR3 SINE MIR -26 236 178 2555 72 125 5 chr3 28865821 28866221 -189170937 + LTR7 LTR ERV1 1 448 -2 334 305 123 44 chr3 28866221 28866364 -189170794 - MIR3 SINE MIR -84 178 14 996 340 83 29 chr3 28867326 28868026 -189169132 + L1PB4 LINE L1 1 738 -6471 1781 243 42 136 chr3 28868676 28869888 -189167270 + L1PB4 LINE L1 1635 2732 -4476 2636 87 95 7 chr3 28869895 28870307 -189166851 + LTR7 LTR ERV1 1 448 -2 19959 100 17 15 chr3 28870309 28873290 -189163868 + HERVH LTR ERV1 1 2987 -4726 798 159 41 0 chr3 28873284 28873429 -189163729 + HERVH LTR ERV1 3140 3290 -4423 * 3229 123 4 6 chr3 28873419 28873922 -189163236 + HERVH LTR ERV1 3492 3993 -3720 4303 149 0 1 chr3 28873924 28874587 -189162571 + HERVH LTR ERV1 4488 5149 -2564 1406 116 23 0 chr3 28874588 28874803 -189162355 + HERVH LTR ERV1 5600 5819 -1894 * 2199 115 62 13 chr3 28874801 28875175 -189161983 + HERVH LTR ERV1 7322 7713 0 2638 92 95 5 chr3 28875175 28875586 -189161572 + LTR7 LTR ERV1 1 448 -2 941 269 17 7 chr3 28875586 28875876 -189161282 + L1PB4 LINE L1 2732 3024 -4184 1054 250 9 18 chr3 28875979 28876358 -189160800 + L1PB4 LINE L1 2913 3326 -3946 4269 237 26 51 chr3 28876374 28877943 -189159215 + L1PB4 LINE L1 4981 6507 -743 2386 118 75 19 chr3 28877943 28878367 -189158791 - MER4-int LTR ERV1 -229 6369 5922 3943 129 12 70 chr3 28878367 28879110 -189158048 + L1PB4 LINE L1 6518 7217 -1 1541 140 3 83 chr3 28879167 28879530 -189157628 - MER4A LTR ERV1 0 664 261 565 146 10 10 chr3 28879530 28879626 -189157532 - MER4A LTR ERV1 -566 98 3 11000 103 38 18 chr3 28879633 28880686 -189156472 - MER4A-int LTR ERV1 -3 6595 5492 2124 115 3 0 chr3 28880686 28880981 -189156177 - AluSc SINE Alu -13 296 1 11000 103 38 18 chr3 28880981 28881678 -189155480 - MER4A-int LTR ERV1 -1106 5492 4810 2676 120 50 51 chr3 28881694 28882382 -189154776 - MER4A-int LTR ERV1 -5766 832 1 1733 137 161 75 chr3 28882385 28882757 -189154401 - MER4A LTR ERV1 0 664 261 584 162 0 10 chr3 28882757 28882856 -189154302 - MER4A LTR ERV1 -566 98 1 341 329 93 29 chr3 28883004 28883250 -189153908 + MIR SINE MIR 1 262 0 364 176 144 16 chr3 28883919 28883956 -189153202 - L1MD3 LINE L1 0 7995 7964 1911 169 39 23 chr3 28883956 28884340 -189152818 + MLT1B LTR MaLR 1 390 0 364 176 144 16 chr3 28884340 28884427 -189152731 - L1MD3 LINE L1 -31 7964 7855 1507 178 12 27 chr3 28886077 28886336 -189150822 - AluJb SINE Alu -57 255 1 7019 117 39 80 chr3 28886472 28887827 -189149331 - HSMAR2 DNA Mariner -1 1301 2 2340 289 67 53 chr3 28888449 28888734 -189148424 + L1MEc LINE L1 108 387 -6009 225 0 0 0 chr3 28888734 28888759 -189148399 + (GA)n Simple_repeat Simple_repeat 1 25 0 2340 289 67 53 chr3 28888759 28888965 -189148193 + L1MEc LINE L1 387 589 -5807 2075 78 0 65 chr3 28888965 28889273 -189147885 + AluSc SINE Alu 1 288 -21 2340 289 67 53 chr3 28889273 28890464 -189146694 + L1MEc LINE L1 589 1815 -4581 2713 162 29 4 chr3 28890487 28891005 -189146153 - L1MA5 LINE L1 -2 6298 5768 523 239 84 0 chr3 28891037 28891192 -189145966 - L1MEc LINE L1 -4613 1783 1616 * 659 247 58 77 chr3 28891189 28891693 -189145465 + L1MEc LINE L1 1847 2304 -3911 2188 80 0 45 chr3 28891693 28892004 -189145154 - AluSc SINE Alu -11 298 2 659 247 58 77 chr3 28892004 28892055 -189145103 + L1MEc LINE L1 2304 2354 -3861 1305 156 34 0 chr3 28892057 28892262 -189144896 + L1PA14 LINE L1 4 215 -7366 6195 239 19 21 chr3 28892272 28894038 -189143120 + L1PA14 LINE L1 2690 4452 -3132 9459 174 64 6 chr3 28894038 28896604 -189140554 + L1PA14 LINE L1 5000 7596 -3 1943 267 17 37 chr3 28896605 28897434 -189139724 + L1MEc LINE L1 2347 3158 -3057 1334 302 30 21 chr3 28897506 28898162 -189138996 + L1MEc LINE L1 3576 4237 -1978 801 300 10 35 chr3 28899088 28899491 -189137667 + L1M4 LINE L1 3776 4168 -1978 180 0 0 0 chr3 28899717 28899737 -189137421 + (A)n Simple_repeat Simple_repeat 1 20 0 334 381 26 11 chr3 28900027 28900216 -189136942 - L2 LINE L2 -1855 1459 1268 2499 77 0 0 chr3 28900611 28900922 -189136236 - AluY SINE Alu 0 311 1 200 362 76 9 chr3 28901091 28901196 -189135962 - MIR3 SINE MIR -85 123 12 1036 214 65 39 chr3 28902189 28902407 -189134751 + L1MD3 LINE L1 7679 7909 -86 2133 176 8 5 chr3 28902407 28902793 -189134365 - MLT1B LTR MaLR -3 387 1 1036 214 65 39 chr3 28902793 28902883 -189134275 + L1MD3 LINE L1 7909 7995 0 405 328 92 0 chr3 28904192 28904387 -189132771 + MIR SINE MIR 47 259 -3 252 233 0 16 chr3 28905410 28905488 -189131670 + L1MA10 LINE L1 5371 5450 -719 297 175 0 32 chr3 28905490 28905553 -189131605 + L1MEc LINE L1 50 110 -6286 445 247 25 66 chr3 28905555 28905752 -189131406 + L1MA10 LINE L1 5978 6326 -4 858 289 140 7 chr3 28905763 28906185 -189130973 + L1ME3A LINE L1 5433 5910 -260 667 256 29 24 chr3 28906993 28907200 -189129958 - L1MC5 LINE L1 -48 7913 7706 450 103 0 0 chr3 28907313 28907385 -189129773 + L1PA16 LINE L1 5871 5942 -219 232 146 0 24 chr3 28907385 28907426 -189129732 + MER66A LTR ERV1 439 478 0 579 221 5 113 chr3 28907957 28908152 -189129006 - MER20 DNA MER1_type -1 218 45 420 55 0 0 chr3 28909074 28909129 -189128029 + (TG)n Simple_repeat Simple_repeat 1 55 0 1474 265 79 35 chr3 28909574 28909683 -189127475 + L2 LINE L2 1513 1616 -1698 2017 148 9 29 chr3 28909683 28910027 -189127131 - MER1B DNA MER1_type 0 337 1 1474 265 79 35 chr3 28910027 28910461 -189126697 + L2 LINE L2 1616 2080 -1234 1917 174 44 72 chr3 28911035 28911535 -189125623 + MER63 DNA MER1_type 572 1057 -3 396 0 0 0 chr3 28911732 28911776 -189125382 + (TG)n Simple_repeat Simple_repeat 2 45 0 542 296 73 24 chr3 28914224 28914430 -189122728 + MIR SINE MIR 46 261 -1 198 279 0 0 chr3 28914616 28914659 -189122499 + MER5A DNA MER1_type 72 114 -75 259 264 41 137 chr3 28914992 28915189 -189121969 - MER5B DNA MER1_type 0 178 1 321 319 69 0 chr3 28915463 28915579 -189121579 - MIR SINE MIR -66 142 19 579 45 63 9 chr3 28916722 28916833 -189120325 + (TAGA)n Simple_repeat Simple_repeat 3 119 0 2115 98 3 64 chr3 28916925 28917098 -189120060 - AluSx SINE Alu -6 306 161 2309 98 7 0 chr3 28917098 28917405 -189119753 - AluSp SINE Alu -4 309 1 2115 98 3 64 chr3 28917405 28917557 -189119601 - AluSx SINE Alu -151 161 1 23 33 0 0 chr3 28917764 28917794 -189119364 + AT_rich Low_complexity Low_complexity 1 30 0 2018 146 79 22 chr3 28917855 28918258 -189118900 + MSTB LTR MaLR 1 426 0 202 147 73 0 chr3 28918422 28918490 -189118668 + (TA)n Simple_repeat Simple_repeat 1 73 0 25 65 0 0 chr3 28918501 28918547 -189118611 + AT_rich Low_complexity Low_complexity 1 46 0 290 312 0 0 chr3 28918941 28919018 -189118140 - MER58A DNA MER1_type -26 81 5 358 345 58 26 chr3 28919068 28919294 -189117864 - L1MEd LINE L1 -5375 744 512 3204 116 107 16 chr3 28919336 28919886 -189117272 + MER4A LTR ERV1 1 600 0 186 43 0 0 chr3 28919910 28919933 -189117225 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1180 114 11 0 chr3 28919933 28920108 -189117050 - L1PB1 LINE L1 -11 6856 6680 12990 196 44 20 chr3 28920109 28920185 -189116973 - L1PB1 LINE L1 -282 6585 6512 357 24 0 0 chr3 28920185 28920227 -189116931 + (TG)n Simple_repeat Simple_repeat 2 43 0 12990 196 44 20 chr3 28920227 28921638 -189115520 - L1PB1 LINE L1 -355 6512 5137 186 103 0 0 chr3 28921638 28921667 -189115491 + (TTG)n Simple_repeat Simple_repeat 2 30 0 12990 196 44 20 chr3 28921667 28922072 -189115086 - L1PB1 LINE L1 -1730 5137 4743 7037 56 26 0 chr3 28922072 28922946 -189114212 + MER11D LTR ERVK 1 897 0 12990 196 44 20 chr3 28922946 28923437 -189113721 - L1PB1 LINE L1 -2124 4743 4265 2197 103 0 7 chr3 28923437 28923738 -189113420 - AluSx SINE Alu -13 299 1 12990 196 44 20 chr3 28923738 28927005 -189110153 - L1PB1 LINE L1 -2602 4265 636 812 163 108 0 chr3 28927007 28927173 -189109985 - L1PB1 LINE L1 -6663 200 17 189 313 234 19 chr3 28927954 28928037 -189109121 - MIR SINE MIR -1 261 197 844 292 47 35 chr3 28928037 28928438 -189108720 + MLT1I LTR MaLR 1 406 -3 189 313 234 19 chr3 28928438 28928568 -189108590 - MIR SINE MIR -65 197 2 634 261 11 23 chr3 28930237 28930413 -189106745 - MER45A DNA AcHobo 0 178 5 5636 170 32 29 chr3 28930477 28931864 -189105294 - Ricksha DNA DNA -25 3221 1821 827 148 61 8 chr3 28931862 28932034 -189105124 - Ricksha DNA DNA -1185 69 3 * 24 67 0 0 chr3 28933508 28933553 -189103605 + AT_rich Low_complexity Low_complexity 1 45 0 224 275 156 0 chr3 28933567 28933676 -189103482 - L2 LINE L2 -64 3249 3124 233 358 0 55 chr3 28934499 28934608 -189102550 - MIR3 SINE MIR -27 181 79 3272 256 67 61 chr3 28935324 28937626 -189099532 - L1ME2 LINE L1 -6 6158 3871 198 0 0 0 chr3 28937626 28937648 -189099510 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 3272 256 67 61 chr3 28937648 28937660 -189099498 - L1ME2 LINE L1 -2293 3871 3861 313 219 0 98 chr3 28937660 28937742 -189099416 - FLAM_A SINE Alu -57 76 3 3272 256 67 61 chr3 28937742 28938307 -189098851 - L1ME2 LINE L1 -2303 3861 3190 249 254 0 0 chr3 28938297 28938368 -189098790 - L1ME LINE L1 -645 5521 5454 * 441 204 146 0 chr3 28938369 28938506 -189098652 - L1ME LINE L1 -756 5410 5254 415 296 132 0 chr3 28938602 28938754 -189098404 + MLT1K LTR MaLR 400 571 -17 569 321 29 41 chr3 28940161 28940404 -189096754 - MIR SINE MIR -3 259 20 22 35 0 0 chr3 28940992 28941021 -189096137 + AT_rich Low_complexity Low_complexity 1 29 0 1509 171 146 34 chr3 28941983 28942368 -189094790 - MSTA LTR MaLR 0 428 1 1242 190 126 26 chr3 28942391 28942701 -189094457 - MER2 DNA MER2_type -1 343 3 235 371 61 15 chr3 28943025 28943157 -189094001 - MIR3 SINE MIR -51 157 20 23 0 0 0 chr3 28943731 28943754 -189093404 + AT_rich Low_complexity Low_complexity 1 23 0 6528 240 82 53 chr3 28943865 28943987 -189093171 - L1MD2 LINE L1 -17 6736 6619 2132 164 80 68 chr3 28943987 28944476 -189092682 - LTR42 LTR ERVL 0 495 1 6528 240 82 53 chr3 28944476 28944722 -189092436 - L1MD2 LINE L1 -134 6619 6381 2167 118 3 10 chr3 28944722 28945035 -189092123 - AluSq SINE Alu -2 311 1 6528 240 82 53 chr3 28945035 28945408 -189091750 - L1MD2 LINE L1 -372 6381 6020 2074 146 0 7 chr3 28945408 28945716 -189091442 - AluSx SINE Alu -1 311 6 6528 240 82 53 chr3 28945716 28947679 -189089479 - L1MD2 LINE L1 -733 6020 4114 2005 146 7 0 chr3 28947679 28947974 -189089184 - AluSx SINE Alu -15 297 1 6528 240 82 53 chr3 28947974 28949318 -189087840 - L1MD2 LINE L1 -2639 4114 2498 1047 193 0 17 chr3 28949318 28949551 -189087607 - L1MA6 LINE L1 -1 6299 6071 6528 240 82 53 chr3 28949551 28950021 -189087137 - L1MD2 LINE L1 -4255 2498 2043 1529 174 65 0 chr3 28950027 28950302 -189086856 + AluJo SINE Alu 1 293 -19 253 351 84 13 chr3 28951303 28951457 -189085701 + L2 LINE L2 3148 3312 -1 1082 250 229 68 chr3 28951486 28952190 -189084968 + L2 LINE L2 1936 2752 -562 555 231 57 90 chr3 28952238 28952468 -189084690 + L1MC5 LINE L1 7609 7826 -135 1540 128 11 7 chr3 28952468 28952742 -189084416 - L1MA4 LINE L1 -6 6294 6020 555 231 57 90 chr3 28952742 28952845 -189084313 + L1MC5 LINE L1 7826 7931 -30 722 315 131 33 chr3 28952846 28953375 -189083783 + L2 LINE L2 2738 3313 0 267 236 100 36 chr3 28954810 28954920 -189082238 - MLT1I LTR MaLR -266 143 27 243 263 0 18 chr3 28954928 28954985 -189082173 - MER2 DNA MER2_type 0 345 290 415 198 37 0 chr3 28954989 28955070 -189082088 - MER2 DNA MER2_type -261 84 1 817 148 0 0 chr3 28955228 28955356 -189081802 + MER31A LTR ERV1 358 485 0 309 217 0 0 chr3 28955875 28955935 -189081223 + MIR SINE MIR 81 140 -122 407 309 1 55 chr3 28956210 28956395 -189080763 - MIR SINE MIR -50 212 38 26 30 0 0 chr3 28956432 28956465 -189080693 + AT_rich Low_complexity Low_complexity 1 33 0 283 313 246 28 chr3 28956631 28956989 -189080169 - L2 LINE L2 0 3313 2878 29 0 0 0 chr3 28957156 28957185 -189079973 + AT_rich Low_complexity Low_complexity 1 29 0 1789 264 69 40 chr3 28957523 28958478 -189078680 + L1ME3 LINE L1 4556 5542 -622 462 238 46 13 chr3 28958519 28958670 -189078488 + L1ME3 LINE L1 5646 5801 -363 485 210 80 56 chr3 28958775 28958937 -189078221 + L1ME3 LINE L1 5845 6010 -152 307 261 102 0 chr3 28960099 28960187 -189076971 - MER5A DNA MER1_type -84 105 9 29 0 0 0 chr3 28960406 28960435 -189076723 + AT_rich Low_complexity Low_complexity 1 29 0 207 184 0 0 chr3 28960468 28960506 -189076652 + (CA)n Simple_repeat Simple_repeat 2 39 0 202 261 21 127 chr3 28961245 28961295 -189075863 - MIR3 SINE MIR -3 205 151 2348 104 21 27 chr3 28961295 28961670 -189075488 + THE1C LTR MaLR 3 375 0 202 261 21 127 chr3 28961670 28961761 -189075397 - MIR3 SINE MIR -57 151 79 1444 258 76 31 chr3 28962478 28962954 -189074204 + MER119 DNA MER1_type 52 548 -35 213 132 0 0 chr3 28964046 28964084 -189073074 + (CA)n Simple_repeat Simple_repeat 2 39 0 218 277 40 28 chr3 28964532 28964670 -189072488 - MIR SINE MIR -56 152 18 248 176 0 129 chr3 28966011 28966096 -189071062 - MIR SINE MIR -61 201 128 189 296 0 0 chr3 28967668 28967712 -189069446 - MER5A DNA MER1_type -124 65 22 39762 60 6 0 chr3 28968410 28974510 -189062648 + L1PA5 LINE L1 11 6146 -8 3085 93 18 9 chr3 28975011 28975451 -189061707 - MLT2A1 LTR ERVL 0 444 1 2694 53 37 0 chr3 28975451 28975825 -189061333 - HERVL-A1 LTR ERVL 0 5654 5267 * 17055 138 12 23 chr3 28975807 28977760 -189059398 + ERVL LTR ERVL 2579 4494 -1270 7493 29 0 1 chr3 28977760 28979396 -189057762 + L1PA4 LINE L1 4534 6168 0 17055 138 12 23 chr3 28979396 28980296 -189056862 + ERVL LTR ERVL 4494 5402 -362 6635 74 5 0 chr3 28980290 28981173 -189055985 - HERVL-A1 LTR ERVL -4767 887 1 * 2643 123 20 27 chr3 28981173 28981212 -189055946 - MLT2A1 LTR ERVL 0 444 406 348 24 0 0 chr3 28981212 28981253 -189055905 + (TA)n Simple_repeat Simple_repeat 2 42 0 2643 123 20 27 chr3 28981253 28981660 -189055498 - MLT2A1 LTR ERVL -38 406 1 364 286 16 16 chr3 28982933 28983059 -189054099 + L1ME LINE L1 5574 5699 -422 759 159 94 0 chr3 28983788 28983989 -189053169 + Charlie5 DNA MER1_type 2400 2619 0 362 313 27 7 chr3 28984168 28984315 -189052843 - MIR SINE MIR -21 241 92 348 222 78 22 chr3 28984958 28985048 -189052110 - L2 LINE L2 -5 3267 3173 687 208 106 106 chr3 28985330 28985478 -189051680 - MER5C DNA MER1_type -2 322 175 9879 30 4 181 chr3 28985478 28987140 -189050018 + SVA Other Other 15 1382 -4 687 208 106 106 chr3 28987140 28987313 -189049845 - MER5C DNA MER1_type -148 176 1 2387 123 5 35 chr3 28988699 28989074 -189048084 + THE1B LTR MaLR 1 364 0 11511 100 6 1 chr3 28989074 28990646 -189046512 + THE1B-int LTR MaLR 1 1580 0 2393 121 5 45 chr3 28990646 28991025 -189046133 + THE1B LTR MaLR 1 364 0 190 370 93 37 chr3 28991291 28991453 -189045705 - L2 LINE L2 -197 3075 2905 273 289 0 21 chr3 28991641 28991738 -189045420 + MLT1L LTR MaLR 152 246 -369 249 300 64 29 chr3 28992522 28992662 -189044496 + L2 LINE L2 2717 2861 -453 1182 259 35 27 chr3 28992914 28993284 -189043874 - MLT1H LTR MaLR -132 417 45 23 33 0 0 chr3 28994845 28994875 -189042283 + AT_rich Low_complexity Low_complexity 1 30 0 2968 162 15 2 chr3 28995120 28995646 -189041512 - MER39B LTR ERV1 0 653 121 297 323 97 19 chr3 28995668 28995823 -189041335 + MIR SINE MIR 91 257 -5 929 225 64 17 chr3 28996504 28996864 -189040294 + Charlie4a DNA MER1_type 49 425 -83 325 188 24 0 chr3 28996914 28996999 -189040159 + GA-rich Low_complexity Low_complexity 2 88 0 183 379 28 64 chr3 28999749 29000031 -189037127 + L2 LINE L2 2239 2510 -804 218 240 21 62 chr3 29000660 29000756 -189036402 - MIR SINE MIR -55 207 116 337 325 120 16 chr3 29001699 29001890 -189035268 - MIR SINE MIR 0 262 52 811 274 16 40 chr3 29002657 29002909 -189034249 + MIR SINE MIR 7 252 -10 2616 151 16 0 chr3 29002916 29003340 -189033818 + MSTB1 LTR MaLR 1 431 -1 1156 169 109 57 chr3 29003829 29004178 -189032980 - MLT1A2 LTR MaLR -7 367 1 1746 176 36 9 chr3 29005053 29005383 -189031775 + MER2 DNA MER2_type 2 340 -5 21 0 0 0 chr3 29005580 29005601 -189031557 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr3 29007432 29007454 -189029704 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 324 314 68 0 chr3 29007924 29008042 -189029116 - MIR SINE MIR -72 190 65 2578 198 26 20 chr3 29008066 29008606 -189028552 + MER67A LTR ERV1 1 543 0 352 324 39 10 chr3 29008718 29008820 -189028338 + L2 LINE L2 3156 3260 -12 22 70 0 0 chr3 29009188 29009231 -189027927 + AT_rich Low_complexity Low_complexity 1 43 0 276 130 0 0 chr3 29009797 29009843 -189027315 + (TG)n Simple_repeat Simple_repeat 2 47 0 243 219 14 0 chr3 29009843 29009916 -189027242 - L1MC4 LINE L1 -1339 6703 6630 225 238 0 0 chr3 29011005 29011047 -189026111 + polypurine Low_complexity Low_complexity 1 42 0 423 143 14 0 chr3 29011133 29011203 -189025955 - LTR3b LTR ERVK -8 492 422 1930 160 41 62 chr3 29011230 29011668 -189025490 - LTR3 LTR ERVK 0 429 1 203 394 0 0 chr3 29012277 29012371 -189024787 - L2 LINE L2 0 3313 3220 263 300 0 0 chr3 29013259 29013309 -189023849 - L3 LINE CR1 -11 1566 1517 342 260 80 23 chr3 29013412 29013696 -189023462 - MLT1H1 LTR MaLR -18 572 161 901 137 15 0 chr3 29013701 29013832 -189023326 - AluSq/x SINE Alu -179 133 1 367 312 51 38 chr3 29013847 29014004 -189023154 - MLT1H1 LTR MaLR -352 203 45 201 353 29 0 chr3 29014324 29014392 -189022766 + L3 LINE CR1 1501 1570 -7 191 264 0 57 chr3 29014640 29014693 -189022465 + L2 LINE L2 3220 3269 -3 24 0 0 0 chr3 29015601 29015625 -189021533 + AT_rich Low_complexity Low_complexity 1 24 0 1783 268 79 34 chr3 29016329 29016587 -189020571 + MLT1E LTR MaLR 1 246 -347 1606 193 46 44 chr3 29016587 29016976 -189020182 - MLT1B LTR MaLR 0 390 1 1783 268 79 34 chr3 29016976 29017284 -189019874 + MLT1E LTR MaLR 246 593 0 335 289 33 11 chr3 29017430 29017520 -189019638 + MIR SINE MIR 14 105 -157 315 0 0 0 chr3 29017793 29017828 -189019330 + (TA)n Simple_repeat Simple_repeat 1 35 0 1991 107 4 0 chr3 29018453 29018723 -189018435 + AluSx SINE Alu 29 299 -13 321 89 0 0 chr3 29019118 29019163 -189017995 + (GA)n Simple_repeat Simple_repeat 1 45 0 310 297 43 43 chr3 29020731 29020869 -189016289 + L1ME3A LINE L1 516 653 -5466 338 279 96 46 chr3 29020924 29021401 -189015757 + L1ME3A LINE L1 757 1257 -4862 236 284 7 74 chr3 29021577 29021725 -189015433 + L1ME3A LINE L1 1409 1546 -4583 916 106 8 0 chr3 29021774 29021906 -189015252 - L1PA15 LINE L1 -2 6163 6031 3534 118 8 0 chr3 29021906 29022422 -189014736 + L1PA15 LINE L1 5509 6028 -137 258 265 88 0 chr3 29022791 29022938 -189014220 + L1ME3A LINE L1 2326 2485 -3644 387 285 39 64 chr3 29023023 29023304 -189013854 + L1ME3A LINE L1 2685 2958 -3171 305 295 58 24 chr3 29023365 29023610 -189013548 + L1ME3A LINE L1 3463 3723 -2406 390 279 128 11 chr3 29023611 29023790 -189013368 + L1ME3A LINE L1 5735 5934 -219 292 331 158 66 chr3 29024336 29024653 -189012505 - L2 LINE L2 0 3272 2927 538 329 135 31 chr3 29024792 29025275 -189011883 - L2 LINE L2 -557 2757 2225 252 86 0 0 chr3 29025745 29025780 -189011378 + (TA)n Simple_repeat Simple_repeat 2 36 0 191 333 81 41 chr3 29026932 29027055 -189010103 - L3 LINE CR1 -1 1576 1449 1204 77 0 18 chr3 29027728 29027896 -189009262 + AluY SINE Alu 147 311 0 366 256 96 16 chr3 29028894 29029019 -189008139 + MER103 DNA DNA 3 137 -29 621 272 6 12 chr3 29030339 29030508 -189006650 + L1MEd LINE L1 4059 4226 -1903 375 23 0 0 chr3 29030514 29030558 -189006600 + (CA)n Simple_repeat Simple_repeat 2 45 0 541 248 59 0 chr3 29030566 29030719 -189006439 - L1M4 LINE L1 -1720 4426 4265 351 0 0 0 chr3 29030722 29030761 -189006397 + (TG)n Simple_repeat Simple_repeat 1 39 0 729 193 0 7 chr3 29030761 29030906 -189006252 + L1MB7 LINE L1 6022 6165 -19 301 336 19 47 chr3 29031031 29031138 -189006020 - L2 LINE L2 -18 3254 3151 1488 188 3 30 chr3 29032968 29033271 -189003887 - AluJb SINE Alu -7 305 11 428 310 22 33 chr3 29033603 29033787 -189003371 + MER5A DNA MER1_type 1 182 -7 439 296 126 13 chr3 29034050 29034280 -189002878 + LTR33A LTR ERVL 264 519 -4 360 236 94 0 chr3 29034385 29034491 -189002667 + MIR SINE MIR 53 168 -94 569 307 34 29 chr3 29034505 29034743 -189002415 + MIR SINE MIR 8 246 -16 183 80 0 0 chr3 29034752 29034777 -189002381 + (CACCAT)n Simple_repeat Simple_repeat 2 26 0 967 311 93 7 chr3 29035449 29035857 -189001301 + L2 LINE L2 2260 2702 -612 633 239 28 22 chr3 29037070 29037250 -188999908 - LTR39 LTR ERV1 -3 780 600 2413 47 0 0 chr3 29037269 29037566 -188999592 + L1PA5 LINE L1 5855 6151 -3 1162 199 50 80 chr3 29037617 29037954 -188999204 - LTR39 LTR ERV1 -456 327 1 1258 186 102 0 chr3 29038069 29038354 -188998804 + MER33 DNA MER1_type 11 324 0 753 193 28 7 chr3 29038750 29038895 -188998263 - MER5A DNA MER1_type -2 187 40 329 293 12 0 chr3 29039049 29039131 -188998027 + MIR SINE MIR 69 151 -57 297 163 139 23 chr3 29039182 29039268 -188997890 + MLT1J LTR MaLR 32 127 -384 265 322 105 23 chr3 29039422 29039593 -188997565 + MLT1J LTR MaLR 312 496 -15 400 293 26 0 chr3 29040636 29040752 -188996406 - MIR SINE MIR -56 152 34 244 265 29 0 chr3 29042164 29042232 -188994926 + MER103 DNA DNA 90 159 -7 1979 165 113 10 chr3 29043379 29043767 -188993391 - MSTA LTR MaLR 0 428 1 629 319 84 31 chr3 29044959 29045342 -188991816 + MLT1J LTR MaLR 73 475 -36 219 239 33 11 chr3 29045729 29045821 -188991337 + (TA)n Simple_repeat Simple_repeat 1 94 0 187 299 13 52 chr3 29045964 29046041 -188991117 + L2 LINE L2 3227 3300 -13 1386 222 121 8 chr3 29046048 29046404 -188990754 - MSTD LTR MaLR 0 396 1 903 181 13 86 chr3 29047747 29047979 -188989179 + MER20 DNA MER1_type 3 217 -2 258 365 47 20 chr3 29048246 29048261 -188988897 - MIR SINE MIR -105 157 144 192 40 0 0 chr3 29048261 29048286 -188988872 + (CAT)n Simple_repeat Simple_repeat 1 25 0 258 365 47 20 chr3 29048286 29048418 -188988740 - MIR SINE MIR -118 144 6 314 269 60 67 chr3 29048488 29048534 -188988624 + MIR SINE MIR 60 105 -157 2605 35 0 6 chr3 29048534 29048845 -188988313 + AluY SINE Alu 1 309 -2 314 269 60 67 chr3 29048845 29048932 -188988226 + MIR SINE MIR 105 192 -70 13058 136 68 22 chr3 29049184 29049732 -188987426 + Tigger1 DNA MER2_type 26 547 -1871 2373 54 0 27 chr3 29049732 29050028 -188987130 - AluY SINE Alu -23 288 1 13058 136 68 22 chr3 29050028 29051767 -188985391 + Tigger1 DNA MER2_type 547 2418 0 303 267 0 40 chr3 29052016 29052117 -188985041 + MLT1L LTR MaLR 204 300 -315 234 260 130 13 chr3 29052284 29052361 -188984797 + MLT1L LTR MaLR 432 517 -98 275 341 98 18 chr3 29052595 29052759 -188984399 + L2 LINE L2 2914 3090 -182 647 289 126 28 chr3 29052783 29053108 -188984050 - MLT1K LTR MaLR -17 571 215 311 354 34 34 chr3 29053479 29053626 -188983532 + L2 LINE L2 3122 3268 -4 42 20 0 0 chr3 29054392 29054441 -188982717 + AT_rich Low_complexity Low_complexity 1 49 0 9644 185 39 14 chr3 29054784 29057152 -188980006 - L1PA15 LINE L1 -2 6163 3722 205 26 26 51 chr3 29057152 29057191 -188979967 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 9644 185 39 14 chr3 29057191 29057878 -188979280 - L1PA15 LINE L1 -2443 3722 3053 21 0 0 0 chr3 29058032 29058053 -188979105 + AT_rich Low_complexity Low_complexity 1 21 0 234 240 29 67 chr3 29058769 29058873 -188978285 + L2 LINE L2 2913 3012 -260 559 255 39 25 chr3 29059158 29059362 -188977796 + MLT1L LTR MaLR 409 615 0 2216 119 0 3 chr3 29059632 29059934 -188977224 - AluSg SINE Alu -9 301 1 339 231 44 22 chr3 29060204 29060295 -188976863 + MLT1G LTR MaLR 1 93 -497 1244 260 44 0 chr3 29060397 29060736 -188976422 + L1ME3A LINE L1 5817 6170 0 204 97 0 0 chr3 29061894 29061925 -188975233 + (T)n Simple_repeat Simple_repeat 1 31 0 327 272 61 22 chr3 29062673 29062901 -188974257 - L1M4 LINE L1 -3369 2777 2541 451 286 9 27 chr3 29062916 29063136 -188974022 - L1M4 LINE L1 -3682 2464 2249 215 200 33 0 chr3 29063175 29063244 -188973914 + (TA)n Simple_repeat Simple_repeat 1 71 0 4386 187 38 9 chr3 29063639 29065170 -188971988 + L1PB4 LINE L1 4581 6155 -1 325 257 178 17 chr3 29065337 29065514 -188971644 + L1PA15 LINE L1 3641 3844 -2302 4724 191 18 9 chr3 29065790 29066755 -188970403 - L1MA8 LINE L1 0 6291 5319 3323 119 4 86 chr3 29066762 29067286 -188969872 - L1MA5A LINE L1 -4 6293 5835 2170 133 0 0 chr3 29067286 29067580 -188969578 + AluSx SINE Alu 1 294 -18 3323 119 4 86 chr3 29067580 29067733 -188969425 - L1MA5A LINE L1 -462 5835 5671 1405 150 90 166 chr3 29067734 29067996 -188969162 + L1 LINE L1 3662 3862 -2284 2891 137 25 6 chr3 29067996 29068472 -188968686 - L1PA14 LINE L1 -3 6158 5674 1405 150 90 166 chr3 29068472 29068756 -188968402 + L1 LINE L1 3862 4166 -1980 * 5672 172 26 9 chr3 29068755 29070361 -188966797 + L1PA15 LINE L1 4533 6163 -2 240 232 12 85 chr3 29070806 29070888 -188966270 + L2 LINE L2 3226 3301 -12 264 323 0 0 chr3 29072067 29072144 -188965014 + MIR SINE MIR 78 155 -53 688 191 166 50 chr3 29072185 29072505 -188964653 - L1MC5 LINE L1 -426 7535 7179 1437 206 60 68 chr3 29072881 29073278 -188963880 - MSTD LTR MaLR 0 396 3 1968 121 50 0 chr3 29073967 29074249 -188962909 + AluSx SINE Alu 1 296 -16 198 200 267 0 chr3 29074376 29074436 -188962722 - L2 LINE L2 0 3313 3238 2061 174 25 28 chr3 29074921 29075318 -188961840 + MSTD LTR MaLR 1 396 0 12254 175 33 6 chr3 29076365 29078460 -188958698 - L1PA15-16 LINE L1 -4696 2153 1 584 116 0 0 chr3 29079206 29079292 -188957866 + AluSc SINE Alu 216 301 -8 258 242 0 32 chr3 29079302 29079364 -188957794 + MER69 DNA AcHobo 36 95 -2431 22 0 0 0 chr3 29079396 29079418 -188957740 + AT_rich Low_complexity Low_complexity 1 22 0 221 364 52 0 chr3 29079558 29079635 -188957523 - MIR SINE MIR -180 82 2 2663 93 3 0 chr3 29079915 29080269 -188956889 - THE1A LTR MaLR 0 355 1 297 243 7 132 chr3 29080824 29080960 -188956198 + L2 LINE L2 3150 3268 -4 6476 151 30 7 chr3 29081438 29082570 -188954588 - Tigger3b DNA MER2_type -1 1230 73 12992 195 75 8 chr3 29082570 29089143 -188948015 - L1PA14 LINE L1 -2 7597 1 448 225 0 0 chr3 29089145 29089225 -188947933 - Tigger3b DNA MER2_type -1150 81 2 576 313 39 0 chr3 29090472 29090654 -188946504 - MIR SINE MIR -16 246 58 962 307 102 21 chr3 29090863 29091293 -188945865 + LTR33A LTR ERVL 59 523 0 236 245 0 0 chr3 29092020 29092069 -188945089 + MER105 DNA DNA 7 55 -149 335 258 129 11 chr3 29092069 29092162 -188944996 + MER5A DNA MER1_type 3 106 -83 2496 65 0 19 chr3 29092213 29092523 -188944635 + AluY SINE Alu 1 304 -7 383 331 30 6 chr3 29092872 29093041 -188944117 + MIR SINE MIR 53 225 -37 22 35 0 0 chr3 29093162 29093191 -188943967 + AT_rich Low_complexity Low_complexity 1 29 0 698 176 206 41 chr3 29093194 29093364 -188943794 - MER20 DNA MER1_type 0 219 22 229 196 0 0 chr3 29095003 29095049 -188942109 + T-rich Low_complexity Low_complexity 3 48 0 732 219 91 91 chr3 29095469 29095798 -188941360 + MER46C DNA MER2_type 5 333 -5 205 290 32 0 chr3 29095806 29095868 -188941290 - MIR SINE MIR -106 156 93 390 299 16 0 chr3 29096041 29096168 -188940990 + MER94 DNA DNA 5 133 -1 196 370 105 25 chr3 29096258 29096458 -188940700 + L2 LINE L2 2894 3109 -163 187 322 100 78 chr3 29096795 29096975 -188940183 + MER5A DNA MER1_type 6 189 0 199 91 23 23 chr3 29097036 29097080 -188940078 + (TTCC)n Simple_repeat Simple_repeat 2 45 0 243 262 24 12 chr3 29097303 29097387 -188939771 + (TTTA)n Simple_repeat Simple_repeat 4 88 0 1162 201 36 52 chr3 29097389 29097718 -188939440 + MER33 DNA MER1_type 1 324 0 190 233 117 17 chr3 29097843 29097903 -188939255 - MER5A DNA MER1_type -84 105 40 870 271 69 3 chr3 29098617 29098905 -188938253 + L1ME3A LINE L1 5680 5986 -184 * 8041 209 36 8 chr3 29098899 29099210 -188937948 + L1MA4A LINE L1 3364 3665 -2638 324 0 0 0 chr3 29099210 29099246 -188937912 + (CA)n Simple_repeat Simple_repeat 1 36 0 8041 209 36 8 chr3 29099246 29101754 -188935404 + L1MA4A LINE L1 3665 6277 -26 969 226 10 5 chr3 29101773 29101977 -188935181 + AluJo SINE Alu 86 290 -22 358 276 51 0 chr3 29102044 29102142 -188935016 + L1ME3A LINE L1 6061 6163 -7 203 385 12 0 chr3 29102736 29102819 -188934339 - L2 LINE L2 0 3313 3230 1943 134 3 0 chr3 29103196 29103480 -188933678 - AluSx SINE Alu -1 311 27 197 379 35 17 chr3 29103724 29103840 -188933318 - L2 LINE L2 -220 3052 2935 231 152 30 30 chr3 29103998 29104064 -188933094 + (TATAA)n Simple_repeat Simple_repeat 1 66 0 4116 154 26 16 chr3 29104166 29104932 -188932226 - L1MA8 LINE L1 -78 7632 6859 2206 185 13 111 chr3 29104929 29105660 -188931498 - L1MA8 LINE L1 -3440 4125 3461 * 1013 221 72 13 chr3 29105668 29105975 -188931183 + L1 LINE L1 2871 3195 -4370 627 185 9 0 chr3 29105986 29106094 -188931064 - FLAM_A SINE Alu -32 110 2 604 204 123 54 chr3 29106097 29106357 -188930801 + L1 LINE L1 3178 3455 -4110 435 116 27 89 chr3 29107119 29107231 -188929927 + L1MA7 LINE L1 6185 6289 -2 25 31 0 0 chr3 29107790 29107822 -188929336 + AT_rich Low_complexity Low_complexity 1 32 0 344 264 58 61 chr3 29108016 29108093 -188929065 + L1 LINE L1 5718 5794 -1771 1554 105 8 29 chr3 29108093 29108290 -188928868 - AluSg SINE Alu 0 322 130 189 0 0 0 chr3 29108290 29108311 -188928847 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1554 105 8 29 chr3 29108311 29108394 -188928764 - AluSg SINE Alu -192 130 47 344 264 58 61 chr3 29108394 29108553 -188928605 + L1 LINE L1 5794 5945 -1620 242 367 25 17 chr3 29108554 29108674 -188928484 + L2 LINE L2 3193 3313 0 756 197 83 31 chr3 29108920 29109113 -188928045 - MER3 DNA MER1_type -1 208 6 765 271 49 0 chr3 29109126 29109329 -188927829 + MER58A DNA MER1_type 1 213 -11 1019 175 0 55 chr3 29110332 29110532 -188926626 + MER5A DNA MER1_type 1 189 0 23 0 0 0 chr3 29110755 29110778 -188926380 + AT_rich Low_complexity Low_complexity 1 23 0 2534 110 28 0 chr3 29110778 29111170 -188925988 - L1MA1 LINE L1 0 6302 5900 343 231 105 70 chr3 29111996 29112139 -188925019 - MIR SINE MIR -50 212 65 828 149 99 9 chr3 29112215 29112297 -188924861 + L1MA9 LINE L1 6067 6140 -172 333 0 0 0 chr3 29112297 29112334 -188924824 + (CA)n Simple_repeat Simple_repeat 2 38 0 828 149 99 9 chr3 29112334 29112491 -188924667 + L1MA9 LINE L1 6140 6310 -2 188 380 25 8 chr3 29112948 29113069 -188924089 - MIR SINE MIR -9 253 131 * 189 229 83 0 chr3 29113067 29113115 -188924043 - L2 LINE L2 0 3313 3262 2175 105 7 20 chr3 29113407 29113712 -188923446 + AluSg SINE Alu 1 301 -9 283 311 92 46 chr3 29113775 29113971 -188923187 - L2 LINE L2 -516 2798 2594 22 35 0 0 chr3 29115336 29115365 -188921793 + AT_rich Low_complexity Low_complexity 1 29 0 2247 105 0 7 chr3 29116946 29117250 -188919908 + AluSg SINE Alu 2 303 -7 5246 157 59 18 chr3 29117974 29119142 -188918016 - L1MA7 LINE L1 0 6291 5077 186 179 0 26 chr3 29119170 29119209 -188917949 + L2 LINE L2 3235 3272 0 359 289 137 32 chr3 29119217 29119407 -188917751 + MIR SINE MIR 22 231 -31 446 174 62 76 chr3 29119867 29120011 -188917147 + L2 LINE L2 3162 3303 -10 206 309 165 0 chr3 29120768 29120865 -188916293 - MIR SINE MIR -18 244 132 2316 81 13 0 chr3 29121068 29121375 -188915783 + AluY SINE Alu 1 311 0 23 0 0 0 chr3 29121543 29121566 -188915592 + AT_rich Low_complexity Low_complexity 1 23 0 1734 150 11 21 chr3 29121777 29122064 -188915094 + AluJb SINE Alu 29 312 0 313 252 55 16 chr3 29122420 29122547 -188914611 - MIR SINE MIR -32 230 99 289 314 103 54 chr3 29123066 29123251 -188913907 - MLT1J LTR MaLR -317 194 1 201 315 41 41 chr3 29124055 29124128 -188913030 + MIR SINE MIR 3 75 -187 251 138 21 149 chr3 29126877 29126971 -188910187 + HAL1 LINE L1 116 197 -2310 344 156 13 13 chr3 29127008 29127085 -188910073 + L1MC4 LINE L1 6992 7068 -974 230 317 131 45 chr3 29127149 29127370 -188909788 + MIR SINE MIR 14 253 -9 23 0 0 0 chr3 29128333 29128356 -188908802 + AT_rich Low_complexity Low_complexity 1 23 0 369 0 0 0 chr3 29128741 29128782 -188908376 + (TG)n Simple_repeat Simple_repeat 2 42 0 630 269 7 0 chr3 29129204 29129349 -188907809 + L2 LINE L2 1846 1991 -1323 606 268 6 19 chr3 29129381 29129538 -188907620 - L1ME2 LINE L1 -27 6137 5983 1526 169 45 29 chr3 29129543 29129856 -188907302 - LTR8 LTR ERV1 0 691 374 8522 184 18 9 chr3 29130542 29132046 -188905112 + L1M1 LINE L1 19 1535 -6030 1453 179 15 52 chr3 29132181 29132505 -188904653 - LTR8 LTR ERV1 -379 312 1 635 292 86 27 chr3 29132588 29133381 -188903777 - L1MCc LINE L1 -4887 1536 1157 2385 303 58 57 chr3 29134156 29134300 -188902858 + L2 LINE L2 1985 2127 -1186 2268 79 3 20 chr3 29134300 29134603 -188902555 - AluSg SINE Alu -12 298 1 2385 303 58 57 chr3 29134603 29135770 -188901388 + L2 LINE L2 2127 3282 -31 491 263 25 0 chr3 29136348 29136466 -188900692 + MIR SINE MIR 71 191 -71 539 119 0 36 chr3 29136847 29136931 -188900227 + L1MA3 LINE L1 1493 1573 -5992 * 10565 194 22 28 chr3 29136930 29138516 -188898642 + L1MA3 LINE L1 2884 4478 -3246 822 217 14 57 chr3 29138516 29138756 -188898402 + AluJb SINE Alu 96 312 0 10565 194 22 28 chr3 29138756 29141971 -188895187 + L1MA3 LINE L1 4478 7724 0 2070 120 10 10 chr3 29142206 29142515 -188894643 - AluSc SINE Alu 0 309 1 514 250 152 18 chr3 29142532 29142696 -188894462 - MER5A DNA MER1_type 0 189 4 651 315 42 12 chr3 29145580 29145821 -188891337 - MIR SINE MIR -2 260 13 1782 156 29 58 chr3 29145921 29146268 -188890890 + MER1B DNA MER1_type 1 337 0 522 304 84 11 chr3 29146536 29146727 -188890431 - MIR SINE MIR -57 205 1 1924 158 0 3 chr3 29146788 29147072 -188890086 - AluSx SINE Alu -29 283 1 1880 256 46 77 chr3 29147072 29147687 -188889471 - MLT1G LTR MaLR 0 590 1 258 344 16 49 chr3 29148453 29148575 -188888583 - L2 LINE L2 -211 3061 2944 315 268 82 10 chr3 29148944 29149041 -188888117 - MER5A DNA MER1_type -77 112 9 275 258 11 43 chr3 29149069 29149162 -188887996 + L2 LINE L2 3168 3257 -15 210 348 54 68 chr3 29150530 29150688 -188886470 + L2 LINE L2 2155 2311 -1003 2323 91 0 0 chr3 29150688 29150986 -188886172 - AluSg SINE Alu -12 298 1 210 348 54 68 chr3 29150986 29151048 -188886110 + L2 LINE L2 2311 2372 -942 6876 68 16 2 chr3 29151083 29152620 -188884538 - L1PA7 LINE L1 0 6154 4600 183 156 0 0 chr3 29152688 29152720 -188884438 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 2145 144 0 3 chr3 29152889 29153202 -188883956 - AluSx SINE Alu 0 312 1 211 273 11 57 chr3 29153205 29153293 -188883865 + MIR SINE MIR 153 236 -26 450 153 46 15 chr3 29153529 29153685 -188883473 + MSTD LTR MaLR 1 124 -304 276 30 0 0 chr3 29153698 29153731 -188883427 + (TC)n Simple_repeat Simple_repeat 2 34 0 841 212 28 1 chr3 29153731 29153910 -188883248 + MSTD LTR MaLR 232 396 0 805 136 16 0 chr3 29155361 29155486 -188881672 - FLAM_C SINE Alu -6 127 1 2335 259 46 31 chr3 29156463 29157391 -188879767 + L2 LINE L2 2207 3148 -165 1243 288 121 18 chr3 29157886 29158382 -188878776 - MLT1H LTR MaLR -2 547 1 2549 241 89 6 chr3 29159289 29160185 -188876973 + L1ME1 LINE L1 3627 4597 -1549 1439 230 115 36 chr3 29160198 29160837 -188876321 + L1ME1 LINE L1 5149 5842 -324 219 139 0 0 chr3 29161100 29161136 -188876022 + (T)n Simple_repeat Simple_repeat 1 36 0 231 314 31 69 chr3 29161143 29161302 -188875856 + MIR SINE MIR 102 254 -8 21 36 0 0 chr3 29161311 29161339 -188875819 + AT_rich Low_complexity Low_complexity 1 28 0 2098 138 3 0 chr3 29161501 29161797 -188875361 + AluSx SINE Alu 3 299 -13 214 219 167 35 chr3 29162283 29162397 -188874761 - MIR SINE MIR -56 206 78 311 315 21 21 chr3 29162641 29162780 -188874378 - MIR SINE MIR -65 143 13 6922 61 2 0 chr3 29163020 29164205 -188872953 + L1PA6 LINE L1 4953 6143 -11 21 0 0 0 chr3 29164724 29164745 -188872413 + AT_rich Low_complexity Low_complexity 1 21 0 534 236 115 12 chr3 29165352 29165517 -188871641 - MIR SINE MIR -5 257 76 523 241 9 0 chr3 29165552 29165664 -188871494 + MER58A DNA MER1_type 1 113 0 854 241 25 10 chr3 29165676 29165875 -188871283 - MER58A DNA MER1_type -21 203 2 315 96 0 0 chr3 29166281 29166333 -188870825 + (A)n Simple_repeat Simple_repeat 1 52 0 416 289 58 19 chr3 29166942 29167098 -188870060 - MIR SINE MIR -21 241 80 338 348 32 26 chr3 29167157 29167312 -188869846 + MIR SINE MIR 85 240 -22 547 312 23 28 chr3 29167320 29167535 -188869623 - MIR SINE MIR -11 251 38 1895 156 15 45 chr3 29168537 29168712 -188868446 - Charlie5 DNA MER1_type 0 2624 2445 1896 103 0 60 chr3 29168712 29169051 -188868107 - AluSq SINE Alu 0 321 1 1895 156 15 45 chr3 29169051 29169278 -188867880 - Charlie5 DNA MER1_type -179 2445 2233 661 188 0 0 chr3 29169287 29169404 -188867754 - MER3 DNA MER1_type -42 167 51 27 0 0 0 chr3 29171299 29171326 -188865832 + AT_rich Low_complexity Low_complexity 1 27 0 1741 185 15 9 chr3 29172210 29172551 -188864607 - MER2 DNA MER2_type 0 344 2 243 298 71 36 chr3 29172672 29172756 -188864402 + MIR SINE MIR 31 117 -91 255 61 0 0 chr3 29172990 29173023 -188864135 + (TAA)n Simple_repeat Simple_repeat 3 35 0 21 36 0 0 chr3 29173023 29173051 -188864107 + AT_rich Low_complexity Low_complexity 1 28 0 497 190 55 16 chr3 29173109 29173234 -188863924 - MIR SINE MIR -67 141 40 237 241 17 0 chr3 29174725 29174783 -188862375 + MLT1J1 LTR MaLR 162 220 -310 * 380 286 113 8 chr3 29174780 29174913 -188862245 + MLT1G LTR MaLR 436 582 -8 2207 112 0 0 chr3 29175550 29175845 -188861313 + AluSc SINE Alu 1 295 -14 476 273 71 13 chr3 29175978 29176132 -188861026 + MLT1J2 LTR MaLR 1 163 -287 1103 266 65 41 chr3 29176141 29176664 -188860494 + MLT1E LTR MaLR 2 591 -2 556 261 81 64 chr3 29176693 29176927 -188860231 + MLT1J1 LTR MaLR 198 435 -11 2407 70 0 29 chr3 29177182 29177495 -188859663 - AluY SINE Alu -7 304 1 577 259 77 24 chr3 29177608 29177855 -188859303 + L1ME LINE L1 5550 5809 -312 207 281 16 0 chr3 29177944 29178008 -188859150 + (CATATA)n Simple_repeat Simple_repeat 4 68 0 1586 226 113 26 chr3 29178200 29178661 -188858497 + MLT1D LTR MaLR 1 501 -4 447 254 26 8 chr3 29179020 29179199 -188857959 + MLT1F LTR MaLR 8 274 -281 287 153 306 0 chr3 29179269 29179341 -188857817 + MER63 DNA MER1_type 32 751 -85 233 261 0 0 chr3 29179355 29179401 -188857757 + MER63 DNA MER1_type 990 1035 -25 4913 135 8 30 chr3 29179416 29180217 -188856941 - LTR39 LTR ERV1 0 783 1 483 275 9 0 chr3 29180290 29180399 -188856759 + MLT1F LTR MaLR 361 470 -72 629 332 27 16 chr3 29180979 29181235 -188855923 + MIR SINE MIR 2 260 -2 433 290 68 11 chr3 29182191 29182367 -188854791 - MIR SINE MIR -29 233 48 1462 239 113 11 chr3 29183635 29184111 -188853047 + MLT1H LTR MaLR 19 543 -6 21 36 0 0 chr3 29184926 29184954 -188852204 + AT_rich Low_complexity Low_complexity 1 28 0 31 58 0 0 chr3 29185948 29186000 -188851158 + AT_rich Low_complexity Low_complexity 1 52 0 311 306 20 0 chr3 29186094 29186192 -188850966 + MLT1G LTR MaLR 3 102 -488 303 333 0 9 chr3 29187016 29187121 -188850037 + GA-rich Low_complexity Low_complexity 3 106 0 617 223 0 0 chr3 29187123 29187280 -188849878 + L1PA14 LINE L1 4354 4510 -1636 5959 104 17 2 chr3 29187280 29188450 -188848708 + L1PA14 LINE L1 4969 6156 -5 34 42 0 0 chr3 29188836 29188884 -188848274 + AT_rich Low_complexity Low_complexity 1 48 0 485 210 30 10 chr3 29188951 29189051 -188848107 - MER81 DNA DNA 0 114 13 2443 225 83 55 chr3 29189555 29190381 -188846777 + L1ME2 LINE L1 4682 5484 -680 212 77 26 0 chr3 29190381 29190420 -188846738 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 2107 81 0 14 chr3 29190421 29190704 -188846454 - AluY SINE Alu -32 279 1 2443 225 83 55 chr3 29190704 29191285 -188845873 + L1ME2 LINE L1 5483 6140 -24 2425 123 26 21 chr3 29191307 29191731 -188845427 - L1PB2 LINE L1 -2 6149 5724 441 36 0 0 chr3 29192535 29192590 -188844568 + (TA)n Simple_repeat Simple_repeat 2 56 0 468 175 45 19 chr3 29192632 29192786 -188844372 + GA-rich Low_complexity Low_complexity 2 159 0 837 207 79 26 chr3 29192786 29193013 -188844145 + L1MC3 LINE L1 6748 6986 -799 437 272 92 35 chr3 29193039 29193267 -188843891 + L1MC3 LINE L1 7180 7420 -365 1685 129 12 0 chr3 29193298 29193546 -188843612 + AluSg SINE Alu 1 251 -59 1113 212 68 0 chr3 29193546 29193616 -188843542 + AluJo SINE Alu 50 114 -198 198 0 0 0 chr3 29193616 29193638 -188843520 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1113 212 68 0 chr3 29193638 29193797 -188843361 + AluJo SINE Alu 114 295 -17 1437 281 91 43 chr3 29193909 29195023 -188842135 + HAL1 LINE L1 1077 2407 -100 590 305 85 31 chr3 29195139 29195526 -188841632 + L1ME3A LINE L1 5394 5801 -320 2467 30 0 14 chr3 29195575 29195870 -188841288 - AluY SINE Alu -20 291 1 2404 44 10 0 chr3 29197545 29197840 -188839318 + AluY SINE Alu 1 298 -13 2521 65 0 0 chr3 29198325 29198633 -188838525 - AluY SINE Alu -3 308 1 327 281 82 37 chr3 29198742 29198877 -188838281 + L1ME3A LINE L1 6027 6167 -3 438 242 152 67 chr3 29199680 29200081 -188837077 + L1ME4a LINE L1 5681 6115 -6 183 313 88 0 chr3 29200376 29200456 -188836702 - MIR SINE MIR -66 196 110 2262 94 0 13 chr3 29200788 29200808 -188836350 - AluY SINE Alu -6 305 286 255 93 0 0 chr3 29200808 29200851 -188836307 + (TATG)n Simple_repeat Simple_repeat 2 44 0 2262 94 0 13 chr3 29200851 29201139 -188836019 - AluY SINE Alu -25 286 1 314 295 41 16 chr3 29202585 29202707 -188834451 + MLT1I LTR MaLR 18 142 -267 259 234 28 75 chr3 29202867 29202974 -188834184 + MLT1H LTR MaLR 432 533 -16 2218 109 0 10 chr3 29203490 29203794 -188833364 + AluY SINE Alu 1 301 -10 1192 224 38 72 chr3 29205856 29205968 -188831190 - MER69 DNA AcHobo -15 2511 2397 2004 127 21 0 chr3 29205968 29206259 -188830899 + AluSx SINE Alu 1 297 -15 1192 224 38 72 chr3 29206259 29206589 -188830569 - MER69 DNA AcHobo -129 2397 2084 818 251 52 43 chr3 29206589 29206961 -188830197 + MLT1C LTR MaLR 1 460 -7 470 242 81 7 chr3 29206995 29207144 -188830014 - MER69 DNA AcHobo -483 2043 1884 976 291 55 12 chr3 29207184 29207722 -188829436 - MER69 DNA AcHobo -630 596 3 1366 200 53 39 chr3 29207844 29208204 -188828954 - MLT1A1 LTR MaLR 0 365 1 180 393 57 52 chr3 29208226 29208437 -188828721 + L2 LINE L2 2985 3196 -76 4230 297 176 24 chr3 29208515 29210920 -188826238 - L2 LINE L2 0 3313 525 3750 179 13 0 chr3 29210921 29211619 -188825539 + L1P LINE L1 3856 4562 -1584 3536 48 0 0 chr3 29211686 29212121 -188825037 - L1PA3 LINE L1 0 6155 5721 6439 87 6 10 chr3 29212122 29213039 -188824119 + L1PA14 LINE L1 4550 5473 -688 2188 101 3 0 chr3 29213039 29213326 -188823832 + AluSp SINE Alu 1 288 -25 6439 87 6 10 chr3 29213326 29214010 -188823148 + L1PA14 LINE L1 5473 6159 -2 5829 217 13 30 chr3 29214010 29215446 -188821712 + L1 LINE L1 2232 3648 -2498 2062 145 132 5 chr3 29215446 29215826 -188821332 + MSTA LTR MaLR 1 428 0 5829 217 13 30 chr3 29215826 29215883 -188821275 + L1 LINE L1 3648 3704 -2442 5648 232 40 17 chr3 29215881 29216537 -188820621 - L1M2 LINE L1 -2331 4517 3878 * 2158 120 0 3 chr3 29216537 29216845 -188820313 - AluSg SINE Alu -3 307 1 5648 232 40 17 chr3 29216845 29217902 -188819256 - L1M2 LINE L1 -2970 3878 2772 33 56 0 0 chr3 29217961 29218015 -188819143 + AT_rich Low_complexity Low_complexity 1 54 0 242 326 179 5 chr3 29218218 29218402 -188818756 + L3b LINE CR1 1248 1463 -120 236 329 13 0 chr3 29219113 29219192 -188817966 - MIR3 SINE MIR -25 183 104 2798 209 9 13 chr3 29219246 29219791 -188817367 + L1M1 LINE L1 12 554 -7011 * 5506 119 53 7 chr3 29219790 29220695 -188816463 + L1MA3 LINE L1 5359 6305 0 2471 225 30 12 chr3 29221039 29221718 -188815440 - L1 LINE L1 -1190 5192 4502 3652 101 2 10 chr3 29221718 29222233 -188814925 + MER9 LTR ERVK 1 511 0 3366 98 2 4 chr3 29222233 29222690 -188814468 + HERVK9 LTR ERVK 1 456 -5460 11423 46 1 2 chr3 29222791 29224169 -188812989 + HERVK9 LTR ERVK 1411 2786 -3130 15270 71 1 3 chr3 29224169 29226096 -188811062 + HERVK9 LTR ERVK 3711 5634 -282 2319 57 4 0 chr3 29226192 29226473 -188810685 + HERVK9 LTR ERVK 5635 5916 0 3583 100 24 4 chr3 29226473 29226974 -188810184 + MER9 LTR ERVK 1 511 0 391 121 0 0 chr3 29226986 29227044 -188810114 - L1 LINE L1 -1886 4496 4439 * 4615 262 93 14 chr3 29227041 29227472 -188809686 - L1 LINE L1 -2409 3973 3578 2082 147 0 3 chr3 29227472 29227778 -188809380 - AluSg SINE Alu -4 306 2 4615 262 93 14 chr3 29227778 29230104 -188807054 - L1 LINE L1 -2804 3578 972 4905 187 57 16 chr3 29230123 29231879 -188805279 - L1PA15 LINE L1 -13 6868 5041 2248 137 3 8 chr3 29231883 29232249 -188804909 - L1PB1 LINE L1 -4 6147 5784 2778 214 100 7 chr3 29232263 29233843 -188803315 - L1PA15 LINE L1 -4985 1878 7 1591 230 14 0 chr3 29233861 29234226 -188802932 - L1P LINE L1 -1820 5042 4673 1317 255 21 29 chr3 29234232 29234613 -188802545 - L1M3e LINE L1 -4931 2099 1722 944 324 57 18 chr3 29234621 29235063 -188802095 - L1M3e LINE L1 -5682 1355 897 534 319 86 60 chr3 29235079 29235719 -188801439 - L1MEd LINE L1 -5040 1270 594 394 339 74 49 chr3 29235823 29236189 -188800969 - L1MEd LINE L1 -5742 377 3 195 328 15 0 chr3 29236221 29236288 -188800870 - L2 LINE L2 0 3272 3205 228 336 137 29 chr3 29236435 29236750 -188800408 + L2 LINE L2 2438 2786 -528 6895 278 28 39 chr3 29236781 29237886 -188799272 + L1PA13 LINE L1 4 1121 -6463 1716 143 47 75 chr3 29237886 29238272 -188798886 - THE1C LTR MaLR 0 375 1 6895 278 28 39 chr3 29238272 29239439 -188797719 + L1PA13 LINE L1 1121 2300 -5284 1894 136 59 0 chr3 29239439 29239725 -188797433 + AluSx SINE Alu 3 305 -7 6895 278 28 39 chr3 29239725 29242008 -188795150 + L1PA13 LINE L1 2300 5043 -2541 15259 182 103 13 chr3 29242025 29248245 -188788913 + L1PB1 LINE L1 1 6867 0 7112 194 26 30 chr3 29248293 29248998 -188788160 + L1PA13 LINE L1 5051 5758 -1843 2557 58 0 10 chr3 29248998 29249310 -188787848 - AluY SINE Alu -2 309 1 7112 194 26 30 chr3 29249310 29250791 -188786367 + L1PA13 LINE L1 5758 7225 -376 2898 177 34 5 chr3 29250791 29251355 -188785803 + LTR22 LTR ERVK 1 580 0 7112 194 26 30 chr3 29251355 29251731 -188785427 + L1PA13 LINE L1 7225 7601 0 972 181 5 69 chr3 29252087 29252268 -188784890 + MLT1B LTR MaLR 1 167 -223 2325 80 3 13 chr3 29252268 29252580 -188784578 + AluY SINE Alu 1 309 -2 972 181 5 69 chr3 29252580 29252614 -188784544 + MLT1B LTR MaLR 167 202 -188 186 103 0 0 chr3 29252655 29252684 -188784474 + (TCTA)n Simple_repeat Simple_repeat 4 32 0 215 203 14 0 chr3 29252695 29252764 -188784394 + (TA)n Simple_repeat Simple_repeat 2 71 0 235 231 0 0 chr3 29252765 29252820 -188784338 + MLT2C1 LTR ERVL 351 395 -2 266 0 29 0 chr3 29252940 29252974 -188784184 + (CA)n Simple_repeat Simple_repeat 2 36 0 455 290 130 12 chr3 29252974 29253143 -188784015 - MIR SINE MIR -69 193 5 263 273 0 0 chr3 29253190 29253245 -188783913 + L2 LINE L2 3216 3270 -2 1764 152 11 0 chr3 29253745 29254015 -188783143 - AluSx SINE Alu -11 301 29 634 234 0 0 chr3 29255302 29255439 -188781719 + MSTB LTR MaLR 11 147 -279 411 236 189 14 chr3 29255724 29255872 -188781286 + MIR SINE MIR 75 248 -14 375 313 52 0 chr3 29256041 29256156 -188781002 - MER5C DNA MER1_type -202 122 2 680 288 62 0 chr3 29257229 29257472 -188779686 + L1ME LINE L1 5412 5669 -497 5249 155 48 19 chr3 29257610 29258350 -188778808 - L1MA8 LINE L1 -3 7248 6531 2284 113 0 0 chr3 29258350 29258652 -188778506 + AluSq SINE Alu 1 302 -11 5249 155 48 19 chr3 29258652 29259521 -188777637 - L1MA8 LINE L1 -720 6531 5599 4139 228 168 30 chr3 29259527 29261783 -188775375 - L1MA8 LINE L1 -2925 4181 2237 210 71 0 0 chr3 29261783 29261811 -188775347 + (CA)n Simple_repeat Simple_repeat 1 28 0 4139 228 168 30 chr3 29261811 29263498 -188773660 - L1MA8 LINE L1 -4869 2237 7 225 127 18 0 chr3 29264398 29264453 -188772705 + MER96B DNA MER1_type? 115 170 -247 479 307 95 65 chr3 29265984 29266508 -188770650 + L2 LINE L2 1818 2357 -957 207 278 46 87 chr3 29266972 29267145 -188770013 + L2 LINE L2 2899 3064 -208 3575 179 82 62 chr3 29267146 29268000 -188769158 - L1MCa LINE L1 -5524 902 32 489 107 48 0 chr3 29269129 29269213 -188767945 + MSTC LTR MaLR 339 426 -2 3256 207 65 44 chr3 29269219 29270088 -188767070 + L1MC1 LINE L1 1486 2336 -3879 3415 131 26 2 chr3 29270088 29270629 -188766529 + MER41C LTR ERV1 1 554 0 3256 207 65 44 chr3 29270629 29271496 -188765662 + L1MC1 LINE L1 2336 3218 -2997 2057 122 23 3 chr3 29271496 29271799 -188765359 + AluSx SINE Alu 1 309 -3 3256 207 65 44 chr3 29271799 29271892 -188765266 + L1MC1 LINE L1 3218 3308 -2907 4108 222 19 15 chr3 29271901 29272748 -188764410 + MER21B LTR ERV1 3 852 -11 6303 234 21 14 chr3 29272814 29274550 -188762608 + L1MC1 LINE L1 3605 5352 -863 350 206 14 14 chr3 29274553 29274626 -188762532 - Tigger5 DNA MER2_type 0 2323 2251 303 169 13 65 chr3 29274638 29274715 -188762443 - Tigger5 DNA MER2_type 0 2323 2251 258 254 0 0 chr3 29274684 29274739 -188762419 - Tigger5 DNA MER2_type -2268 55 1 * 4053 152 12 24 chr3 29274740 29275703 -188761455 + L1MC1 LINE L1 5355 6377 -25 645 244 82 22 chr3 29276090 29276360 -188760798 - LTR37A LTR ERV1 -33 393 108 798 234 70 0 chr3 29277035 29277236 -188759922 + MER58C DNA MER1_type 1 215 0 250 294 0 0 chr3 29278311 29278379 -188758779 + CT-rich Low_complexity Low_complexity 2 69 0 307 323 131 3 chr3 29278480 29278762 -188758396 + L1ME LINE L1 5501 5818 -303 22 0 0 0 chr3 29278953 29278975 -188758183 + AT_rich Low_complexity Low_complexity 1 22 0 302 218 39 0 chr3 29279288 29279366 -188757792 - L1M4 LINE L1 -3627 2519 2439 2424 89 3 0 chr3 29279919 29280222 -188756936 + AluSp SINE Alu 1 304 -9 417 186 23 124 chr3 29283328 29283457 -188753701 + MLT1H LTR MaLR 383 498 -51 1112 317 100 9 chr3 29283584 29284088 -188753070 - L2 LINE L2 0 3313 2758 398 200 14 21 chr3 29284114 29284254 -188752904 + (TCTA)n Simple_repeat Simple_repeat 4 142 0 236 370 120 0 chr3 29284299 29284407 -188752751 + L2 LINE L2 3146 3266 -6 3742 183 55 93 chr3 29286271 29287515 -188749643 + MER52A LTR ERV1 1 1196 -559 400 208 0 0 chr3 29287507 29287579 -188749579 + MER52A LTR ERV1 1684 1755 0 * 230 172 52 0 chr3 29287649 29287707 -188749451 + (TAAA)n Simple_repeat Simple_repeat 3 63 0 1018 188 16 0 chr3 29287905 29288091 -188749067 - MER5A DNA MER1_type 0 189 1 21 36 0 0 chr3 29288631 29288659 -188748499 + AT_rich Low_complexity Low_complexity 1 28 0 2348 107 0 0 chr3 29288717 29289026 -188748132 + AluSg SINE Alu 1 309 -1 238 263 29 88 chr3 29289268 29289405 -188747753 - MLT1J LTR MaLR 0 511 383 272 231 15 15 chr3 29289495 29289560 -188747598 - MLT1J LTR MaLR -353 158 94 368 254 51 35 chr3 29289631 29289828 -188747330 + HAL1 LINE L1 2054 2253 -254 556 285 35 17 chr3 29289838 29290010 -188747148 + MLT1J LTR MaLR 6 180 -331 26 30 0 0 chr3 29290381 29290414 -188746744 + AT_rich Low_complexity Low_complexity 1 33 0 9302 63 10 114 chr3 29290481 29292029 -188745129 + SVA Other Other 1 1386 0 180 0 0 0 chr3 29292252 29292272 -188744886 + (A)n Simple_repeat Simple_repeat 1 20 0 403 207 19 4 chr3 29293486 29293600 -188743558 + L1MC4 LINE L1 7883 8042 0 26 64 0 0 chr3 29293658 29293705 -188743453 + AT_rich Low_complexity Low_complexity 1 47 0 267 364 65 9 chr3 29293737 29293954 -188743204 + L1ME LINE L1 5595 5823 -298 564 295 98 30 chr3 29294892 29295261 -188741897 - Charlie7 DNA MER1_type -1936 676 283 660 261 143 28 chr3 29295334 29295719 -188741439 - MLT1J2 LTR MaLR 0 446 3 236 253 0 77 chr3 29295725 29295816 -188741342 - Charlie7 DNA MER1_type -2417 195 112 222 128 0 0 chr3 29296135 29296174 -188740984 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr3 29296216 29296238 -188740920 + AT_rich Low_complexity Low_complexity 1 22 0 257 263 0 38 chr3 29297247 29297327 -188739831 - Charlie7 DNA MER1_type -2424 188 112 189 308 0 0 chr3 29297990 29298042 -188739116 - L2 LINE L2 -1 3271 3220 3001 169 30 81 chr3 29298682 29299386 -188737772 + LTR8 LTR ERV1 1 668 -23 2026 224 128 24 chr3 29299380 29300037 -188737121 + MER50 LTR ERV1 10 734 0 * 255 70 0 93 chr3 29300037 29300080 -188737078 + LTR8 LTR ERV1 653 691 0 836 234 54 0 chr3 29300367 29300551 -188736607 - MER58A DNA MER1_type 0 224 31 1926 265 35 21 chr3 29301686 29302253 -188734905 - MLT1G LTR MaLR -15 575 1 39 74 0 0 chr3 29302551 29302632 -188734526 + AT_rich Low_complexity Low_complexity 1 81 0 2163 118 0 0 chr3 29302757 29303053 -188734105 + AluSg SINE Alu 1 296 -14 39 22 0 0 chr3 29303151 29303197 -188733961 + AT_rich Low_complexity Low_complexity 1 46 0 2313 87 43 3 chr3 29303588 29303935 -188733223 + L1MA2 LINE L1 5939 6299 -5 299 284 216 8 chr3 29304675 29304809 -188732349 - MIR3 SINE MIR -3 205 44 281 232 14 14 chr3 29304947 29305016 -188732142 + GA-rich Low_complexity Low_complexity 4 72 0 196 157 59 0 chr3 29305032 29305083 -188732075 + GA-rich Low_complexity Low_complexity 4 57 0 633 255 0 14 chr3 29305433 29305574 -188731584 + MLT1I LTR MaLR 270 408 -1 282 305 24 12 chr3 29306330 29306412 -188730746 + L2 LINE L2 3179 3261 -11 1002 298 81 24 chr3 29306521 29306904 -188730254 + MLT1I LTR MaLR 5 409 0 2775 183 34 15 chr3 29307546 29308186 -188728972 - L1MA9 LINE L1 -22 6290 5543 27 49 0 0 chr3 29308577 29308618 -188728540 + AT_rich Low_complexity Low_complexity 1 41 0 327 274 124 65 chr3 29308666 29308876 -188728282 - L1ME LINE L1 -401 5720 5524 2049 130 7 3 chr3 29308876 29309177 -188727981 - AluSg SINE Alu -8 302 1 327 274 124 65 chr3 29309177 29309400 -188727758 - L1ME LINE L1 -597 5524 5261 22 56 0 0 chr3 29309532 29309568 -188727590 + AT_rich Low_complexity Low_complexity 1 36 0 524 274 25 60 chr3 29309709 29309910 -188727248 + MIR SINE MIR 5 198 -64 465 261 71 38 chr3 29310140 29310324 -188726834 - L2 LINE L2 -2 3311 3122 237 368 0 0 chr3 29310419 29310495 -188726663 - MIR SINE MIR -77 185 110 378 281 102 56 chr3 29310697 29310893 -188726265 - L1MC4a LINE L1 -1914 5894 5690 460 341 28 8 chr3 29310899 29311154 -188726004 - MIR SINE MIR 0 262 3 253 128 0 0 chr3 29311209 29311248 -188725910 - L1MC4a LINE L1 -458 5663 5625 386 302 0 10 chr3 29312720 29312816 -188724342 + L2 LINE L2 3197 3291 -22 207 0 0 0 chr3 29312823 29312846 -188724312 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 814 171 18 6 chr3 29312970 29313134 -188724024 + L1MA10 LINE L1 6169 6334 0 213 94 0 0 chr3 29314522 29314554 -188722604 + (CAT)n Simple_repeat Simple_repeat 3 34 0 1105 160 5 0 chr3 29315174 29315368 -188721790 + L1PBa LINE L1 1 195 -6668 9024 186 6 6 chr3 29315373 29318266 -188718892 + L1PBa LINE L1 636 3765 -3097 6403 211 5 6 chr3 29318262 29319709 -188717449 + L1 LINE L1 4457 5902 -960 * 2351 85 9 6 chr3 29319709 29320028 -188717130 + L1PB1 LINE L1 5821 6151 0 218 268 73 12 chr3 29320349 29320431 -188716727 - MIR SINE MIR -64 144 58 304 303 55 9 chr3 29320561 29320670 -188716488 - MLT1F LTR MaLR -401 141 28 358 197 56 0 chr3 29320676 29320747 -188716411 - MLT1F LTR MaLR -465 77 3 229 293 0 61 chr3 29320927 29321009 -188716149 - L2 LINE L2 -6 3307 3231 204 275 0 46 chr3 29321037 29321146 -188716012 + GA-rich Low_complexity Low_complexity 5 108 0 1763 86 6 147 chr3 29321758 29322085 -188715073 + AluSp SINE Alu 1 281 -32 186 43 0 0 chr3 29322086 29322109 -188715049 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 253 212 15 45 chr3 29322161 29322227 -188714931 - MIR3 SINE MIR -41 167 104 198 167 0 0 chr3 29323044 29323080 -188714078 + A-rich Low_complexity Low_complexity 1 36 0 352 319 181 19 chr3 29323577 29323843 -188713315 - L1ME3A LINE L1 -334 5836 5528 676 159 0 53 chr3 29323844 29323976 -188713182 + L1PA10 LINE L1 6035 6159 -9 391 277 34 6 chr3 29324182 29324397 -188712761 - L1ME3A LINE L1 -653 5517 5282 * 395 228 53 0 chr3 29324393 29324507 -188712651 + L1ME3A LINE L1 5828 5947 -223 2285 109 0 0 chr3 29324738 29325040 -188712118 + AluSc SINE Alu 1 302 -7 1119 127 6 6 chr3 29325040 29325206 -188711952 + AluSg/x SINE Alu 134 299 -13 910 198 43 77 chr3 29325489 29326021 -188711137 + L1MDa LINE L1 2638 3155 -3694 566 258 31 13 chr3 29326103 29326262 -188710896 - MIR SINE MIR -27 235 74 276 340 21 56 chr3 29326556 29326700 -188710458 + MER91C DNA MER1_type 2 140 0 9329 151 106 7 chr3 29326743 29328436 -188708722 + L1P4 LINE L1 893 2754 -4095 1199 259 11 6 chr3 29328435 29328790 -188708368 + L1P4 LINE L1 2998 3354 -3495 * 8840 210 30 9 chr3 29328795 29331554 -188705604 + L1P4 LINE L1 3711 6527 -342 607 168 0 53 chr3 29331556 29331669 -188705489 + U6 snRNA snRNA 1 107 0 502 204 27 41 chr3 29331669 29331806 -188705352 + L1PA15 LINE L1 2764 2900 -4681 * 8500 251 13 6 chr3 29331805 29334158 -188703000 + L1PA15 LINE L1 3311 5679 -1905 347 174 23 0 chr3 29334177 29334263 -188702895 + L1PA15 LINE L1 6536 6623 -961 * 618 198 9 8 chr3 29334251 29334382 -188702776 + L1PA15 LINE L1 7089 7220 -374 15385 192 46 16 chr3 29334391 29341048 -188696110 + L1PB2 LINE L1 3 6865 -2 1187 126 0 11 chr3 29341057 29341262 -188695896 + L1PA15 LINE L1 7207 7400 -199 2076 139 0 26 chr3 29341744 29342089 -188695069 + L1PA16 LINE L1 5822 6157 -9 17679 179 55 33 chr3 29342808 29344679 -188692479 + L1 LINE L1 19 1846 -5719 207 0 0 0 chr3 29344679 29344702 -188692456 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 17679 179 55 33 chr3 29344702 29347592 -188689566 + L1 LINE L1 1846 4894 -2671 434 158 0 0 chr3 29347693 29347775 -188689383 + L1 LINE L1 6563 6644 -921 424 291 127 14 chr3 29348260 29348480 -188688678 + MIR SINE MIR 18 262 0 247 326 59 112 chr3 29349311 29349784 -188687374 + L2 LINE L2 2825 3272 0 845 208 25 95 chr3 29349788 29350029 -188687129 - MER58A DNA MER1_type 0 224 1 4448 126 5 23 chr3 29351872 29352618 -188684540 + L1PA15 LINE L1 5426 6158 -7 940 211 10 0 chr3 29353320 29353519 -188683639 + L1MB3 LINE L1 5870 6070 -113 968 181 28 77 chr3 29353645 29353893 -188683265 - L1PA16 LINE L1 0 6166 5931 9136 246 17 42 chr3 29353908 29354870 -188682288 - L1PA13 LINE L1 -2528 4269 3284 401 41 0 0 chr3 29354870 29354919 -188682239 - MADE1 DNA Mariner -31 49 1 9136 246 17 42 chr3 29354919 29356546 -188680612 - L1PA13 LINE L1 -3513 3284 1699 5681 177 32 18 chr3 29356544 29357572 -188679586 - L1PA13 LINE L1 -5744 1043 1 * 21 0 0 0 chr3 29358716 29358737 -188678421 + AT_rich Low_complexity Low_complexity 1 21 0 1370 174 41 10 chr3 29358810 29359103 -188678055 - L1MA9 LINE L1 -22 6290 5989 390 21 0 0 chr3 29359485 29359532 -188677626 + (TG)n Simple_repeat Simple_repeat 1 47 0 27 29 0 0 chr3 29361969 29362003 -188675155 + AT_rich Low_complexity Low_complexity 1 34 0 380 283 118 72 chr3 29362033 29362087 -188675071 - L1ME4a LINE L1 -76 6045 5995 2277 123 33 6 chr3 29362087 29362452 -188674706 + THE1C LTR MaLR 1 375 0 380 283 118 72 chr3 29362452 29362772 -188674386 - L1ME4a LINE L1 -126 5995 5655 493 333 58 60 chr3 29363373 29363805 -188673353 - L2 LINE L2 -68 3245 2815 373 212 104 39 chr3 29363821 29364015 -188673143 + MER58 DNA MER1_type 10 2419 -1 398 287 167 0 chr3 29364026 29364200 -188672958 - L2 LINE L2 -514 2800 2598 246 299 0 28 chr3 29566776 29566883 -188470275 - MLT1E LTR MaLR -489 104 1 315 211 25 111 chr3 29566884 29567083 -188470075 - L1MC/D LINE L1 -2371 5437 5256 2469 77 3 0 chr3 29567141 29567451 -188469707 - AluY SINE Alu 0 311 1 312 27 0 0 chr3 29567490 29567527 -188469631 + (CA)n Simple_repeat Simple_repeat 2 38 0 2511 231 39 13 chr3 29567540 29567594 -188469564 + L1MCa LINE L1 1996 2047 -4379 2018 155 24 3 chr3 29567594 29567929 -188469229 + MER7A DNA MER2_type 4 343 -3 2511 231 39 13 chr3 29567929 29569134 -188468024 + L1MCa LINE L1 2047 3289 -3137 3102 184 10 0 chr3 29569149 29569664 -188467494 + Tigger7 DNA MER2_type 2 521 -212 390 240 0 42 chr3 29569663 29569674 -188467484 + Tigger7 DNA MER2_type 2396 2406 -81 * 1159 170 49 0 chr3 29569674 29569898 -188467260 - MER46A DNA MER2_type 0 236 2 390 240 0 42 chr3 29569898 29569982 -188467176 + Tigger7 DNA MER2_type 2406 2487 0 7651 83 9 10 chr3 29569982 29571836 -188465322 + L1PA7 LINE L1 4288 6154 0 2719 249 43 9 chr3 29571847 29572660 -188464498 + L1MCa LINE L1 3308 4148 -2278 23 54 0 0 chr3 29573715 29573752 -188463406 + AT_rich Low_complexity Low_complexity 1 37 0 511 189 180 0 chr3 29575139 29575250 -188461908 - FLAM_A SINE Alu -2 131 1 283 326 0 76 chr3 29576284 29576416 -188460742 - MER5A DNA MER1_type -24 165 44 2001 178 6 8 chr3 29579249 29579615 -188457543 - MLT1A1 LTR MaLR 0 365 1 337 303 34 109 chr3 29580443 29580618 -188456540 + MIR3 SINE MIR 43 204 -4 359 229 181 9 chr3 29581391 29581496 -188455662 - L2 LINE L2 0 3313 3191 679 229 0 0 chr3 29582091 29582209 -188454949 - FLAM_A SINE Alu -15 118 1 276 293 75 75 chr3 29582275 29582606 -188454552 - L2 LINE L2 -842 2472 2142 29 70 0 0 chr3 29582608 29582665 -188454493 + AT_rich Low_complexity Low_complexity 1 57 0 298 332 74 11 chr3 29583445 29583635 -188453523 - L2 LINE L2 -1378 1936 1735 789 181 51 59 chr3 29583690 29583894 -188453264 + MER33 DNA MER1_type 51 254 -2331 1537 224 34 6 chr3 29583894 29584247 -188452911 - MLT1A1 LTR MaLR 0 365 3 789 181 51 59 chr3 29584247 29584296 -188452862 + MER33 DNA MER1_type 254 302 -22 190 354 13 0 chr3 29586236 29586315 -188450843 - L2 LINE L2 -665 2649 2570 517 186 150 0 chr3 29586395 29586508 -188450650 - FLAM_C SINE Alu -2 131 2 533 284 130 14 chr3 29586572 29586787 -188450371 - MIR SINE MIR -8 254 15 31 26 0 0 chr3 29586868 29586906 -188450252 + AT_rich Low_complexity Low_complexity 1 38 0 2198 103 0 0 chr3 29586906 29587245 -188449913 + AluY SINE Alu 1 339 0 2645 61 0 0 chr3 29587722 29588033 -188449125 + AluY SINE Alu 1 311 0 610 276 65 40 chr3 29588158 29588689 -188448469 - MLT1H LTR MaLR 0 595 1 276 30 0 0 chr3 29588701 29588734 -188448424 + (A)n Simple_repeat Simple_repeat 1 33 0 1980 205 143 72 chr3 29588897 29589768 -188447390 - LTR28 LTR ERV1 0 1020 3 23 54 0 0 chr3 29589775 29589812 -188447346 + AT_rich Low_complexity Low_complexity 1 37 0 378 180 288 14 chr3 29589881 29590020 -188447138 - MIR SINE MIR 0 262 86 180 158 0 0 chr3 29590674 29590712 -188446446 + GA-rich Low_complexity Low_complexity 2 39 0 22 35 0 0 chr3 29592438 29592467 -188444691 + AT_rich Low_complexity Low_complexity 1 29 0 2584 189 44 17 chr3 29592506 29593047 -188444111 - LTR38 LTR ERV1 0 556 1 21 36 0 0 chr3 29593986 29594014 -188443144 + AT_rich Low_complexity Low_complexity 1 28 0 340 288 17 0 chr3 29594261 29594379 -188442779 - MIR SINE MIR -12 250 131 232 349 48 0 chr3 29594881 29594964 -188442194 - L2 LINE L2 -2 3270 3184 584 303 150 57 chr3 29595054 29595183 -188441975 - L2 LINE L2 -645 2669 2553 2665 36 0 3 chr3 29595183 29595490 -188441668 - AluY SINE Alu -5 306 1 584 303 150 57 chr3 29595490 29595779 -188441379 - L2 LINE L2 -761 2553 2212 399 333 55 36 chr3 29597716 29597881 -188439277 + L2 LINE L2 3104 3271 -1 556 325 32 67 chr3 29598144 29598520 -188438638 + L1M4c LINE L1 414 776 -5527 2772 262 46 23 chr3 29598715 29599847 -188437311 + L1M4c LINE L1 777 1825 -4516 7091 124 26 44 chr3 29599910 29600776 -188436382 + L1PA11 LINE L1 4046 4926 -1248 2156 110 0 0 chr3 29600776 29601080 -188436078 + AluSg SINE Alu 1 304 0 7091 124 26 44 chr3 29601080 29601537 -188435621 + L1PA11 LINE L1 4926 5390 -784 2223 133 0 0 chr3 29601537 29601838 -188435320 - AluSq SINE Alu -12 301 1 1511 58 39 10 chr3 29601844 29602051 -188435107 - L1PA7 LINE L1 -1 6153 5941 7091 124 26 44 chr3 29602051 29602879 -188434279 + L1PA11 LINE L1 5395 6174 0 6486 234 41 19 chr3 29602896 29603734 -188433424 + L1M4c LINE L1 2013 2831 -3551 255 103 0 0 chr3 29603734 29603773 -188433385 + (CA)n Simple_repeat Simple_repeat 2 40 0 6486 234 41 19 chr3 29603773 29604109 -188433049 + L1M4c LINE L1 2831 3158 -3224 1376 174 4 4 chr3 29604109 29604345 -188432813 + MER46A DNA MER2_type 1 236 0 6486 234 41 19 chr3 29604345 29605405 -188431753 + L1M4c LINE L1 3158 4299 -2083 929 228 25 5 chr3 29606411 29606613 -188430545 + MER3 DNA MER1_type 4 209 0 2002 141 3 0 chr3 29606651 29606948 -188430210 - AluSx SINE Alu -14 298 1 1030 306 49 82 chr3 29607154 29607681 -188429477 - MLT2E LTR ERVL -118 510 1 7266 230 64 77 chr3 29608942 29609034 -188428124 + L1M2 LINE L1 82 174 -6674 1953 141 52 47 chr3 29609034 29609396 -188427762 - THE1B LTR MaLR 0 364 1 11114 101 20 4 chr3 29609396 29610951 -188426207 - THE1B-int LTR MaLR 0 1580 1 2322 131 5 32 chr3 29610951 29611325 -188425833 - THE1B LTR MaLR 0 364 1 7266 230 64 77 chr3 29611325 29612802 -188424356 + L1M2 LINE L1 172 1667 -5181 297 0 0 0 chr3 29612802 29612835 -188424323 + (CA)n Simple_repeat Simple_repeat 2 34 0 7266 230 64 77 chr3 29612835 29613536 -188423622 + L1M2 LINE L1 1667 2376 -4472 1803 132 57 48 chr3 29613536 29613908 -188423250 - THE1C LTR MaLR 0 375 1 7266 230 64 77 chr3 29613908 29615169 -188421989 + L1M2 LINE L1 2376 3572 -3276 321 26 0 0 chr3 29615173 29615211 -188421947 + (TG)n Simple_repeat Simple_repeat 1 38 0 209 179 48 0 chr3 29615219 29615303 -188421855 + (TA)n Simple_repeat Simple_repeat 1 88 0 1532 82 5 0 chr3 29615303 29615511 -188421647 - L1P5 LINE L1 -360 5791 5583 852 277 89 15 chr3 29615630 29616024 -188421134 + L1MC4a LINE L1 5525 5947 -1861 26 82 0 0 chr3 29616187 29616248 -188420910 + AT_rich Low_complexity Low_complexity 1 61 0 40341 33 18 2 chr3 29616306 29622338 -188414820 - L1PA2 LINE L1 0 6155 1 378 266 28 28 chr3 29622343 29622486 -188414672 - L1ME LINE L1 -377 5744 5602 586 324 72 52 chr3 29623671 29624072 -188413086 + LTR16C LTR ERVL 73 481 -10 528 288 33 84 chr3 29624928 29625202 -188411956 + MLT1J LTR MaLR 7 266 -245 448 222 40 0 chr3 29625696 29625795 -188411363 - MIR SINE MIR -61 201 99 198 359 39 31 chr3 29627445 29627573 -188409585 + MIR3 SINE MIR 31 159 -49 968 177 70 0 chr3 29627944 29627987 -188409171 + MER3 DNA MER1_type 5 60 -149 319 239 132 44 chr3 29627987 29628146 -188409012 - MER3 DNA MER1_type 0 209 37 314 280 0 32 chr3 29628836 29628929 -188408229 - L1MC4 LINE L1 -1339 6703 6614 459 63 84 21 chr3 29628933 29629076 -188408082 + (TA)n Simple_repeat Simple_repeat 1 152 0 281 303 28 84 chr3 29629309 29629367 -188407791 - MIR3 SINE MIR -40 168 108 1338 186 70 0 chr3 29629367 29629668 -188407490 + MER33 DNA MER1_type 3 324 0 281 303 28 84 chr3 29629668 29629751 -188407407 - MIR3 SINE MIR -100 108 35 865 100 0 90 chr3 29629882 29630082 -188407076 + AluSg SINE Alu 39 220 -90 216 0 0 0 chr3 29630166 29630190 -188406968 + (A)n Simple_repeat Simple_repeat 1 24 0 32 0 0 0 chr3 29630241 29630273 -188406885 + AT_rich Low_complexity Low_complexity 1 32 0 43 101 0 0 chr3 29630719 29630798 -188406360 + AT_rich Low_complexity Low_complexity 1 79 0 980 128 0 4 chr3 29631521 29631772 -188405386 + (TA)n Simple_repeat Simple_repeat 1 250 0 234 0 0 0 chr3 29631771 29631797 -188405361 + (GA)n Simple_repeat Simple_repeat 2 27 0 * 535 299 13 28 chr3 29631800 29631884 -188405274 + L1ME LINE L1 5086 5170 -992 1611 170 3 27 chr3 29631884 29632184 -188404974 + AluJb SINE Alu 1 293 -19 535 299 13 28 chr3 29632184 29632570 -188404588 + L1ME LINE L1 5170 5550 -612 1077 152 0 34 chr3 29632855 29633033 -188404125 + FRAM SINE Alu 1 164 -12 25 0 0 0 chr3 29633263 29633288 -188403870 + AT_rich Low_complexity Low_complexity 1 25 0 600 221 52 29 chr3 29633884 29634093 -188403065 + LTR41 LTR ERVL 1 244 -551 496 196 20 131 chr3 29634280 29634479 -188402679 + LTR41 LTR ERVL 496 672 -101 336 188 21 52 chr3 29634565 29634661 -188402497 + LTR41 LTR ERVL 675 767 -6 343 306 115 6 chr3 29636173 29636276 -188400882 + MIR SINE MIR 37 164 -98 2498 170 12 0 chr3 29636276 29636699 -188400459 - MSTA LTR MaLR 0 428 1 343 306 115 6 chr3 29636699 29636752 -188400406 + MIR SINE MIR 164 210 -52 530 92 0 13 chr3 29636836 29636912 -188400246 - MADE1 DNA Mariner -5 75 1 597 248 87 34 chr3 29637150 29637356 -188399802 - L1ME3A LINE L1 -11 6159 5943 433 294 56 7 chr3 29637405 29637548 -188399610 - L2 LINE L2 -5 3308 3159 295 297 14 22 chr3 29637927 29638065 -188399093 + MER103 DNA DNA 10 146 -20 923 131 0 7 chr3 29638154 29638299 -188398859 - MER39 LTR ERV1 0 707 564 600 232 114 29 chr3 29638293 29638618 -188398540 - MER39 LTR ERV1 -272 435 1 * 724 251 94 0 chr3 29639946 29640137 -188397021 + MER63A DNA MER1_type 2 210 0 231 277 235 8 chr3 29640288 29640407 -188396751 - Charlie8 DNA MER1_type -2138 279 134 266 311 135 14 chr3 29641231 29641379 -188395779 + L2 LINE L2 3147 3312 -1 184 278 103 62 chr3 29641675 29641772 -188395386 - MIR SINE MIR -44 218 118 1507 108 33 11 chr3 29642145 29642468 -188394690 - L1P5 LINE L1 -628 5523 5196 312 293 150 15 chr3 29642938 29643071 -188394087 - MIR SINE MIR -25 237 87 427 194 5 1 chr3 29643377 29643464 -188393694 - MLT1E2 LTR MaLR 0 626 504 396 250 73 0 chr3 29643465 29643585 -188393573 - MLT1E2 LTR MaLR -125 380 228 2501 83 123 5 chr3 29643594 29643993 -188393165 + LTR7 LTR ERV1 3 448 -2 620 114 0 0 chr3 29643995 29644083 -188393075 + HERVH LTR ERV1 1 88 -7625 * 14847 91 8 22 chr3 29644076 29646287 -188390871 + HERVH LTR ERV1 817 2995 -4718 6000 101 1 2 chr3 29646266 29647121 -188390037 + HERVH LTR ERV1 3140 3993 -3720 * 4445 133 1 3 chr3 29647123 29647786 -188389372 + HERVH LTR ERV1 4488 5149 -2564 1333 123 38 0 chr3 29647787 29647999 -188389159 + HERVH LTR ERV1 5600 5819 -1894 * 2426 87 50 16 chr3 29647997 29648375 -188388783 + HERVH LTR ERV1 7322 7712 -1 10791 178 56 22 chr3 29648588 29652042 -188385116 + L1MA4A LINE L1 2648 6228 -75 2000 124 17 3 chr3 29652042 29652341 -188384817 - AluSp SINE Alu -10 303 1 10791 178 56 22 chr3 29652341 29652413 -188384745 + L1MA4A LINE L1 6228 6296 -7 456 199 74 48 chr3 29652658 29652825 -188384333 - MIR SINE MIR -46 216 45 1041 70 0 7 chr3 29652920 29653062 -188384096 - L1PA7 LINE L1 -134 6020 5880 2166 164 35 35 chr3 29654611 29655068 -188382090 + MSTB2 LTR MaLR 1 457 0 924 153 5 48 chr3 29655831 29656020 -188381138 - L1PA3 LINE L1 0 6155 5975 1059 291 43 76 chr3 29656818 29657551 -188379607 + L2 LINE L2 2541 3253 -60 376 280 10 20 chr3 29657790 29657890 -188379268 + L2 LINE L2 3215 3313 0 22 35 0 0 chr3 29658279 29658308 -188378850 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr3 29659494 29659526 -188377632 + AT_rich Low_complexity Low_complexity 1 32 0 2216 178 20 0 chr3 29659793 29660187 -188376971 - Tigger1 DNA MER2_type 0 2418 2017 * 8025 153 32 24 chr3 29660179 29661602 -188375556 - Tigger1 DNA MER2_type -976 1442 8 1356 248 56 50 chr3 29662329 29662829 -188374329 - MLT1D LTR MaLR 0 505 3 356 271 84 54 chr3 29662970 29663136 -188374022 - MIR SINE MIR -76 186 16 605 238 93 6 chr3 29663235 29663407 -188373751 - MER5A DNA MER1_type 0 189 3 704 173 30 6 chr3 29663519 29663687 -188373471 + GA-rich Low_complexity Low_complexity 1 172 0 283 239 15 30 chr3 29663753 29663820 -188373338 - MIR SINE MIR -96 112 47 231 114 0 0 chr3 29665876 29665911 -188371247 + (CAT)n Simple_repeat Simple_repeat 2 36 0 399 285 123 17 chr3 29665970 29666149 -188371009 - MIR SINE MIR -3 259 62 537 278 7 7 chr3 29666211 29666362 -188370796 + MER5B DNA MER1_type 26 176 -2 422 256 8 26 chr3 29667340 29667457 -188369701 - L2 LINE L2 0 3313 3199 27 0 0 0 chr3 29668817 29668844 -188368314 + AT_rich Low_complexity Low_complexity 1 27 0 755 262 51 65 chr3 29669173 29669509 -188367649 - MLT1I LTR MaLR -8 401 71 523 178 101 28 chr3 29669802 29670007 -188367151 - MER106B DNA MER1_type -6 1053 12 420 311 25 78 chr3 29670211 29670455 -188366703 + MIR SINE MIR 2 232 -30 563 216 159 0 chr3 29670852 29670947 -188366211 - L1 LINE L1 -2822 3324 3245 243 0 0 0 chr3 29670947 29670974 -188366184 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 563 216 159 0 chr3 29670974 29671123 -188366035 - L1 LINE L1 -2901 3245 3041 1948 81 4 4 chr3 29671127 29671374 -188365784 + AluSg SINE Alu 50 296 -14 21 0 0 0 chr3 29671410 29671431 -188365727 + AT_rich Low_complexity Low_complexity 1 21 0 180 77 0 0 chr3 29673380 29673406 -188363752 + (GA)n Simple_repeat Simple_repeat 1 26 0 2304 90 3 0 chr3 29674110 29674410 -188362748 - AluSc SINE Alu -8 301 1 394 245 57 19 chr3 29678585 29678691 -188358467 + MER91B DNA MER1_type 11 120 -70 4645 115 22 0 chr3 29678716 29679385 -188357773 - LTR12 LTR ERV1 0 688 5 2437 185 46 24 chr3 29679401 29679990 -188357168 - pTR5 LTR ERV1 -1094 1344 743 248 320 58 19 chr3 29679993 29680096 -188357062 + MER91B DNA MER1_type 83 189 -1 290 179 164 0 chr3 29680472 29680539 -188356619 - MER116 DNA Mariner -1 79 2 23 33 0 0 chr3 29680567 29680597 -188356561 + AT_rich Low_complexity Low_complexity 1 30 0 582 224 106 12 chr3 29680597 29680758 -188356400 + MER58C DNA MER1_type 40 215 0 198 0 0 0 chr3 29681764 29681786 -188355372 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 330 324 25 28 chr3 29682280 29682458 -188354700 - MER5A DNA MER1_type -3 186 1 180 380 92 5 chr3 29682531 29682715 -188354443 + L2 LINE L2 1917 2116 -1198 757 226 164 5 chr3 29682804 29683012 -188354146 + MIR SINE MIR 15 255 -7 591 337 129 30 chr3 29683023 29683984 -188353174 + L2 LINE L2 2211 3272 0 26 0 0 0 chr3 29684093 29684119 -188353039 + AT_rich Low_complexity Low_complexity 1 26 0 7128 14 0 7 chr3 29684125 29684952 -188352206 - L1PA3 LINE L1 0 6155 5335 * 11655 30 1 2 chr3 29684949 29686358 -188350800 + L1P LINE L1 3965 5371 -775 374 301 51 45 chr3 29686730 29686906 -188350252 - MIR3 SINE MIR -13 195 19 728 120 40 32 chr3 29687412 29687537 -188349621 + THE1B LTR MaLR 1 126 -238 30572 105 8 11 chr3 29687561 29693273 -188343885 - L1PA7 LINE L1 -14 6455 748 1469 136 41 21 chr3 29693274 29693517 -188343641 + THE1B LTR MaLR 117 364 0 11269 113 2 2 chr3 29693517 29695097 -188342061 + THE1B-int LTR MaLR 1 1580 0 1588 115 37 34 chr3 29695099 29695368 -188341790 + THE1B LTR MaLR 3 272 -92 182 364 17 59 chr3 29695668 29695786 -188341372 + MIR3 SINE MIR 15 127 -81 27 0 0 0 chr3 29697758 29697785 -188339373 + AT_rich Low_complexity Low_complexity 1 27 0 1792 179 0 3 chr3 29698598 29698930 -188338228 + AluJb SINE Alu 1 331 0 1295 264 32 14 chr3 29699004 29699348 -188337810 + LTR16A LTR ERVL 92 441 -9 232 342 54 18 chr3 29700652 29700763 -188336395 - L2 LINE L2 0 3272 3158 609 276 85 51 chr3 29701234 29701528 -188335630 + MLT1J1 LTR MaLR 126 429 -17 21 0 0 0 chr3 29701815 29701836 -188335322 + AT_rich Low_complexity Low_complexity 1 21 0 5821 159 37 4 chr3 29702905 29704529 -188332629 - L1MA5 LINE L1 -13 6287 4608 2229 185 33 31 chr3 29704525 29705039 -188332119 - L1MA5 LINE L1 -2327 3819 3305 * 294 154 96 0 chr3 29705039 29705091 -188332067 - AluS SINE Alu -246 57 1 21 36 0 0 chr3 29705303 29705331 -188331827 + AT_rich Low_complexity Low_complexity 1 28 0 285 334 151 30 chr3 29705711 29706211 -188330947 - L2 LINE L2 -5 3308 2672 243 315 40 27 chr3 29706215 29706364 -188330794 + L1MEd LINE L1 3 153 -5966 312 285 65 0 chr3 29706817 29706940 -188330218 + L1MEd LINE L1 702 832 -5287 1218 201 35 50 chr3 29707103 29707386 -188329772 + AluJo SINE Alu 11 289 -23 974 277 129 22 chr3 29707388 29707582 -188329576 + L1M4 LINE L1 4078 4250 -1896 2228 114 0 0 chr3 29707582 29707881 -188329277 + AluSq SINE Alu 1 299 -14 974 277 129 22 chr3 29707881 29708571 -188328587 + L1M4 LINE L1 4250 5055 -1091 613 114 0 0 chr3 29708606 29708694 -188328464 + AluY SINE Alu 3 90 -221 265 152 22 0 chr3 29708825 29708871 -188328287 + THE1A LTR MaLR 309 355 0 27 0 0 0 chr3 29709450 29709477 -188327681 + AT_rich Low_complexity Low_complexity 1 27 0 194 0 0 37 chr3 29709534 29709561 -188327597 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1809 166 0 3 chr3 29709563 29709852 -188327306 - AluSx SINE Alu -24 288 1 250 216 0 0 chr3 29711347 29711398 -188325760 + L1M4 LINE L1 3980 4030 -2116 * 3733 192 133 97 chr3 29711396 29712167 -188324991 + L1MC3 LINE L1 6310 7251 -534 313 289 0 21 chr3 29712167 29712264 -188324894 + MLT1F1 LTR MaLR 37 131 -436 3733 192 133 97 chr3 29712264 29712813 -188324345 + L1MC3 LINE L1 7251 7778 -7 1558 149 202 15 chr3 29712840 29713182 -188323976 - MSTA LTR MaLR -21 407 2 2543 229 101 11 chr3 29713187 29714000 -188323158 + L1MC4a LINE L1 6967 7808 0 209 398 16 31 chr3 29716552 29716618 -188320540 + L2 LINE L2 3147 3212 -60 2133 105 0 30 chr3 29716618 29716914 -188320244 - AluSq SINE Alu -26 287 1 209 398 16 31 chr3 29716914 29716975 -188320183 + L2 LINE L2 3212 3272 0 204 40 0 0 chr3 29717058 29717083 -188320075 + (TG)n Simple_repeat Simple_repeat 1 25 0 253 208 0 62 chr3 29717121 29717217 -188319941 + L1MC4 LINE L1 6614 6703 -1339 22 56 0 0 chr3 29717292 29717328 -188319830 + AT_rich Low_complexity Low_complexity 1 36 0 4550 211 46 8 chr3 29717944 29718908 -188318250 + L1PA15-16 LINE L1 734 1685 -5164 5610 277 63 64 chr3 29719032 29719846 -188317312 - L1M1 LINE L1 -4052 2680 1867 1791 152 24 0 chr3 29719846 29720136 -188317022 - AluSx SINE Alu -15 297 1 5610 277 63 64 chr3 29720136 29722359 -188314799 - L1M1 LINE L1 -4865 1867 17 1149 297 34 34 chr3 29722370 29722980 -188314178 - L1M3de LINE L1 -5600 1053 2 28 29 0 0 chr3 29723072 29723107 -188314051 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr3 29723173 29723197 -188313961 + AT_rich Low_complexity Low_complexity 1 24 0 492 280 91 39 chr3 29723471 29723778 -188313380 - L1ME LINE L1 -446 5675 5353 11446 26 9 0 chr3 29724014 29725412 -188311746 - L1P LINE L1 -732 5399 3989 6684 35 0 5 chr3 29725412 29726214 -188310944 + L1PA3 LINE L1 5356 6155 0 4195 198 33 8 chr3 29726265 29727194 -188309964 + L1MA9 LINE L1 4280 5232 -914 3691 176 42 29 chr3 29727199 29727797 -188309361 + L1MA9 LINE L1 5436 6050 -262 2075 128 0 7 chr3 29727797 29728094 -188309064 + AluSx SINE Alu 1 295 -17 3691 176 42 29 chr3 29728094 29728354 -188308804 + L1MA9 LINE L1 6050 6305 -7 1261 205 49 92 chr3 29728382 29728850 -188308308 - LTR7 LTR ERV1 -1 449 2 2246 85 3 17 chr3 29730199 29730493 -188306665 + AluSp SINE Alu 1 290 -23 1312 264 99 36 chr3 29730542 29731098 -188306060 + MER97a DNA MER1_type? 9 599 -295 530 244 168 5 chr3 29731191 29731400 -188305758 - LTR16A1 LTR ERVL -214 243 1 449 234 37 90 chr3 29731506 29731694 -188305464 + MLT1D LTR MaLR 48 225 -280 985 73 0 15 chr3 29731696 29731833 -188305325 - LTR7 LTR ERV1 -2 448 314 1973 138 33 25 chr3 29732115 29732476 -188304682 - THE1B LTR MaLR 0 364 1 6797 105 1 5 chr3 29732476 29733402 -188303756 - THE1B-int LTR MaLR 0 1580 659 28 48 0 0 chr3 29733810 29733852 -188303306 + AT_rich Low_complexity Low_complexity 1 42 0 885 195 6 0 chr3 29733984 29734143 -188303015 + AluJb SINE Alu 140 299 -13 318 138 86 0 chr3 29734481 29734539 -188302619 - AluSp/q SINE Alu -4 299 237 7498 218 23 10 chr3 29734647 29737375 -188299783 + L1PA15-16 LINE L1 1684 4460 -2389 18028 156 34 16 chr3 29737385 29739739 -188297419 + L1PB1 LINE L1 3 2314 -4553 5969 52 31 23 chr3 29739739 29740513 -188296645 - LTR17 LTR ERV1 0 780 1 18028 156 34 16 chr3 29740513 29743167 -188293991 + L1PB1 LINE L1 2314 4920 -1947 189 0 0 0 chr3 29743167 29743188 -188293970 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 18028 156 34 16 chr3 29743188 29743803 -188293355 + L1PB1 LINE L1 4920 5523 -1344 2480 76 0 0 chr3 29743803 29744104 -188293054 + AluSq SINE Alu 1 301 -12 18028 156 34 16 chr3 29744104 29744946 -188292212 + L1PB1 LINE L1 5523 6591 -276 321 26 0 0 chr3 29744946 29744984 -188292174 + (CA)n Simple_repeat Simple_repeat 1 38 0 18028 156 34 16 chr3 29744984 29745265 -188291893 + L1PB1 LINE L1 6591 6866 -1 2616 209 3 44 chr3 29745243 29745460 -188291698 + L1MA7 LINE L1 4444 4668 -2194 * 2156 110 7 0 chr3 29745460 29745750 -188291408 + AluSg SINE Alu 1 292 -18 2616 209 3 44 chr3 29745750 29746168 -188290990 + L1MA7 LINE L1 4668 5053 -1809 3433 157 33 42 chr3 29746168 29746902 -188290256 + L1MA7 LINE L1 6280 7006 -1 407 312 52 23 chr3 29747006 29747179 -188289979 - MIR3 SINE MIR -8 200 23 22 0 0 0 chr3 29747626 29747648 -188289510 + AT_rich Low_complexity Low_complexity 1 22 0 959 235 73 34 chr3 29747704 29747910 -188289248 - L1ME LINE L1 -468 5696 5471 387 56 0 0 chr3 29747910 29747964 -188289194 + (TG)n Simple_repeat Simple_repeat 2 55 0 959 235 73 34 chr3 29747964 29748085 -188289073 - L1ME LINE L1 -693 5471 5356 691 296 28 6 chr3 29748089 29748315 -188288843 + L1ME1 LINE L1 5945 6334 0 2341 183 46 39 chr3 29748533 29748988 -188288170 - L1MB8 LINE L1 -12 6166 5705 1279 210 52 39 chr3 29748988 29749373 -188287785 - MLT1B LTR MaLR 0 390 1 2341 183 46 39 chr3 29749373 29749503 -188287655 - L1MB8 LINE L1 -473 5705 5577 * 5491 249 63 67 chr3 29749502 29751138 -188286020 + MLT1A1-int LTR MaLR 107 1735 0 1054 237 7 106 chr3 29751139 29751544 -188285614 + MLT1A1 LTR MaLR 1 365 0 231 178 33 33 chr3 29751556 29751646 -188285512 - L1M4 LINE L1 -2912 4045 3956 3079 253 83 7 chr3 29751687 29752494 -188284664 - L1M4 LINE L1 -5558 1301 434 410 360 61 32 chr3 29753212 29753490 -188283668 + L2 LINE L2 2574 2859 -455 441 36 0 0 chr3 29754698 29754712 -188282446 + (TG)n Simple_repeat Simple_repeat 1 69 0 441 36 0 0 chr3 29754712 29754767 -188282391 + (TG)n Simple_repeat Simple_repeat 2 56 0 203 337 22 22 chr3 29754948 29755037 -188282121 + L2 LINE L2 3174 3262 -10 235 204 0 0 chr3 29755522 29755566 -188281592 - L2 LINE L2 0 3272 3229 235 236 69 42 chr3 29757234 29757306 -188279852 - L2 LINE L2 -16 3256 3183 291 294 134 17 chr3 29757508 29757627 -188279531 - MIR SINE MIR -13 249 117 21 0 0 0 chr3 29757717 29757738 -188279420 + AT_rich Low_complexity Low_complexity 1 21 0 864 260 38 60 chr3 29758064 29758510 -188278648 - L1MC4 LINE L1 -484 7558 7123 1628 253 75 17 chr3 29758511 29759508 -188277650 + L1ME2 LINE L1 1882 2921 -3294 668 219 109 99 chr3 29759520 29759803 -188277355 + L1ME2 LINE L1 5566 5851 -384 731 236 34 0 chr3 29759850 29760028 -188277130 + L1ME2 LINE L1 5850 6033 -200 340 322 98 6 chr3 29760286 29760469 -188276689 - L1 LINE L1 -1779 4367 4168 515 332 10 5 chr3 29760771 29760964 -188276194 - MIR SINE MIR -56 206 13 1350 269 152 30 chr3 29761010 29761535 -188275623 - MLT1G1 LTR MaLR -6 589 1 957 215 114 20 chr3 29761589 29761892 -188275266 - MSTD LTR MaLR 0 396 38 236 342 13 13 chr3 29761973 29761987 -188275171 + MER5A DNA MER1_type 110 123 -66 2036 131 41 0 chr3 29761987 29762278 -188274880 - AluSx SINE Alu -9 303 1 236 342 13 13 chr3 29762278 29762342 -188274816 + MER5A DNA MER1_type 122 188 -1 187 373 0 0 chr3 29762344 29762419 -188274739 - MIR3 SINE MIR -49 159 85 25 0 0 0 chr3 29763317 29763342 -188273816 + AT_rich Low_complexity Low_complexity 1 25 0 282 143 0 0 chr3 29765510 29765559 -188271599 + (TG)n Simple_repeat Simple_repeat 2 50 0 651 247 18 0 chr3 29766624 29766794 -188270364 - MER5B DNA MER1_type -1 177 5 4092 199 52 24 chr3 29766919 29767888 -188269270 + L1MC3 LINE L1 6005 7000 -785 1146 204 54 57 chr3 29767911 29768245 -188268913 + L1MC3 LINE L1 7135 7467 -318 * 1401 263 12 14 chr3 29768243 29768589 -188268569 + L1MA7 LINE L1 2 346 -5935 450 321 24 12 chr3 29768636 29768806 -188268352 - L1M3f LINE L1 -4780 570 374 1758 280 35 3 chr3 29768983 29770204 -188266954 + L1MA7 LINE L1 857 2177 -4174 520 257 61 42 chr3 29770330 29770619 -188266539 + L1M4c LINE L1 2041 2344 -4038 * 8170 189 51 33 chr3 29770603 29772529 -188264629 + L1MA7 LINE L1 3504 5494 -1001 2378 118 11 32 chr3 29772529 29772901 -188264257 - THE1B LTR MaLR 0 364 1 8170 189 51 33 chr3 29772901 29773919 -188263239 + L1MA7 LINE L1 5494 6493 -2 877 246 70 0 chr3 29773960 29774261 -188262897 + L1MC3 LINE L1 7452 7773 -12 3097 174 25 0 chr3 29774442 29774972 -188262186 - MER6A DNA MER2_type -1 604 62 46 19 0 0 chr3 29774972 29775025 -188262133 + AT_rich Low_complexity Low_complexity 1 53 0 1779 237 31 34 chr3 29775947 29776582 -188260576 - L1M4c LINE L1 -3453 3395 2771 4224 201 22 16 chr3 29776582 29777637 -188259521 + L1M4c LINE L1 3373 4433 -2415 411 275 18 48 chr3 29778439 29778606 -188258552 - L2 LINE L2 0 3313 3152 250 338 103 31 chr3 29778812 29779102 -188258056 - L2 LINE L2 -728 2586 2276 26 74 0 0 chr3 29779356 29779410 -188257748 + AT_rich Low_complexity Low_complexity 1 54 0 2056 65 0 4 chr3 29779763 29780025 -188257133 + AluY SINE Alu 41 301 -10 2072 92 4 0 chr3 29780127 29780389 -188256769 + AluSp SINE Alu 1 263 -50 23 0 0 0 chr3 29780734 29780757 -188256401 + AT_rich Low_complexity Low_complexity 1 23 0 735 316 77 10 chr3 29780826 29781136 -188256022 + LTR16A LTR ERVL 120 450 0 2186 89 0 24 chr3 29781168 29781459 -188255699 + AluSx SINE Alu 1 284 -28 219 69 0 0 chr3 29782379 29782408 -188254750 + (TG)n Simple_repeat Simple_repeat 1 29 0 235 136 23 0 chr3 29784608 29784652 -188252506 + MER39 LTR ERV1 1 45 -662 * 256 169 0 68 chr3 29784649 29784708 -188252450 + MER34 LTR ERV1 68 122 -420 * 1189 200 67 13 chr3 29784679 29785078 -188252080 + MER39 LTR ERV1 257 707 0 440 279 61 77 chr3 29785106 29785353 -188251805 + MLT1J LTR MaLR 212 454 -57 2421 61 0 0 chr3 29786482 29786779 -188250379 + AluY SINE Alu 1 297 -14 330 26 0 0 chr3 29787823 29787862 -188249296 + (CA)n Simple_repeat Simple_repeat 2 40 0 4882 222 47 11 chr3 29787864 29789375 -188247783 + L1M4c LINE L1 2206 3775 -2607 * 5198 74 8 9 chr3 29789373 29790269 -188246889 + L1PA7 LINE L1 5059 5957 -197 1910 174 90 37 chr3 29790269 29790734 -188246424 + LTR2B LTR ERV1 1 490 0 1412 83 5 0 chr3 29790734 29790926 -188246232 + L1PA7 LINE L1 5954 6146 -8 292 314 19 0 chr3 29791175 29791280 -188245878 + L3b LINE CR1 1320 1426 -157 1470 258 108 29 chr3 29791427 29792122 -188245036 + MER20B DNA MER1_type 4 753 -30 30 0 0 0 chr3 29793368 29793398 -188243760 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr3 29794588 29794610 -188242548 + AT_rich Low_complexity Low_complexity 1 22 0 268 62 0 0 chr3 29794639 29794671 -188242487 + (A)n Simple_repeat Simple_repeat 1 32 0 21 82 0 0 chr3 29796068 29796117 -188241041 + AT_rich Low_complexity Low_complexity 1 49 0 189 0 0 0 chr3 29796249 29796270 -188240888 + (A)n Simple_repeat Simple_repeat 1 21 0 23 54 0 0 chr3 29796916 29796953 -188240205 + AT_rich Low_complexity Low_complexity 1 37 0 2270 187 46 6 chr3 29797234 29797711 -188239447 + L1MC3 LINE L1 7290 7785 0 232 303 0 15 chr3 29797950 29798016 -188239142 - L2 LINE L2 -5 3308 3244 261 282 99 0 chr3 29798110 29798181 -188238977 + L2 LINE L2 3220 3297 -16 363 249 171 39 chr3 29798224 29798405 -188238753 - MIR SINE MIR -38 224 20 32 26 0 0 chr3 29798411 29798450 -188238708 + AT_rich Low_complexity Low_complexity 1 39 0 252 0 0 0 chr3 29799439 29799467 -188237691 + (CAAAAA)n Simple_repeat Simple_repeat 1 28 0 396 208 0 0 chr3 29799776 29799872 -188237286 + (TG)n Simple_repeat Simple_repeat 2 97 0 268 191 111 0 chr3 29800312 29800375 -188236783 + MER115 DNA AcHobo 616 685 -8 2257 97 0 7 chr3 29801036 29801335 -188235823 - AluSg SINE Alu -13 297 1 2172 114 0 7 chr3 29801335 29801641 -188235517 - AluSx SINE Alu -8 304 1 992 220 0 0 chr3 29802965 29803151 -188234007 - MER5A DNA MER1_type -1 188 3 453 230 18 26 chr3 29803263 29803376 -188233782 + MER81 DNA DNA 3 114 0 2306 107 3 0 chr3 29803442 29803751 -188233407 - AluSx SINE Alu -2 310 1 209 200 20 0 chr3 29807320 29807370 -188229788 + (TGAA)n Simple_repeat Simple_repeat 3 53 0 294 325 50 0 chr3 29808708 29808828 -188228330 - MIR SINE MIR -74 188 63 190 333 83 0 chr3 29809207 29809291 -188227867 + L2 LINE L2 2694 2784 -530 3998 212 49 30 chr3 29809291 29811322 -188225836 + L1MB7 LINE L1 4049 6161 -23 22 0 0 0 chr3 29811622 29811644 -188225514 + AT_rich Low_complexity Low_complexity 1 22 0 426 294 0 16 chr3 29811886 29812012 -188225146 - FLAM_A SINE Alu -9 124 1 184 0 97 0 chr3 29812279 29812310 -188224848 + T-rich Low_complexity Low_complexity 2 35 0 3508 102 30 26 chr3 29812601 29813167 -188223991 + LTR24B LTR ERV1 1 568 -8 714 74 0 0 chr3 29813246 29813341 -188223817 - AluY SINE Alu -4 307 213 341 205 12 36 chr3 29814791 29814874 -188222284 - MIR SINE MIR -28 234 154 328 298 107 49 chr3 29814875 29815080 -188222078 - MIR SINE MIR -41 221 5 275 292 21 21 chr3 29815302 29815398 -188221760 + GA-rich Low_complexity Low_complexity 1 96 0 21 57 0 0 chr3 29815509 29815544 -188221614 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr3 29815552 29815594 -188221564 + AT_rich Low_complexity Low_complexity 1 42 0 1528 201 128 38 chr3 29815753 29816205 -188220953 - MLT1D LTR MaLR 0 505 13 27 49 0 0 chr3 29816424 29816465 -188220693 + AT_rich Low_complexity Low_complexity 1 41 0 278 312 127 41 chr3 29816468 29817125 -188220033 + HAL1b LINE L1 47 775 -573 1982 156 57 23 chr3 29817125 29817477 -188219681 + THE1B LTR MaLR 1 364 0 278 312 127 41 chr3 29817477 29817553 -188219605 + HAL1b LINE L1 775 843 -505 207 69 0 0 chr3 29817948 29817977 -188219181 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 226 336 112 0 chr3 29818084 29818191 -188218967 + MIR SINE MIR 25 143 -65 21 0 0 0 chr3 29818370 29818391 -188218767 + AT_rich Low_complexity Low_complexity 1 21 0 1891 167 11 30 chr3 29818457 29818828 -188218330 - THE1B LTR MaLR 0 364 1 180 252 75 75 chr3 29818991 29819098 -188218060 - L2 LINE L2 0 3272 3166 272 321 12 0 chr3 29819390 29819474 -188217684 + GA-rich Low_complexity Low_complexity 3 87 0 16058 60 1 0 chr3 29820320 29822761 -188214397 + L1PA4 LINE L1 1 2443 -3703 8564 40 0 1 chr3 29822761 29824585 -188212573 + L1PA4 LINE L1 4321 6148 -7 21 36 0 0 chr3 29824591 29824619 -188212539 + AT_rich Low_complexity Low_complexity 1 28 0 942 194 75 9 chr3 29825973 29826376 -188210782 - L1MC/D LINE L1 -758 5806 5484 638 260 16 0 chr3 29826368 29826560 -188210598 - L1MC/D LINE L1 -1287 5277 5083 * 1794 181 40 3 chr3 29826560 29826886 -188210272 + Tigger7 DNA MER2_type 4 341 -392 630 240 7 7 chr3 29826884 29827030 -188210128 + Tigger7 DNA MER2_type 2439 2584 -3 * 1737 255 25 18 chr3 29827031 29827659 -188209499 - L1MC/D LINE L1 -1498 5066 4434 * 2105 227 90 48 chr3 29827653 29828521 -188208637 - L1MCa LINE L1 -5189 892 10 22 56 0 0 chr3 29828872 29828908 -188208250 + AT_rich Low_complexity Low_complexity 1 36 0 338 359 54 5 chr3 29830182 29830366 -188206792 + MLT1K LTR MaLR 102 294 -294 2439 249 44 8 chr3 29831109 29832059 -188205099 - L1M4 LINE L1 -2342 3804 2821 1969 164 42 33 chr3 29832324 29832871 -188204287 - MLT2A2 LTR ERVL 0 554 1 1768 211 38 34 chr3 29832871 29833373 -188203785 + L1ME1 LINE L1 5579 6082 -84 2474 101 93 5 chr3 29833373 29833780 -188203378 - LTR7 LTR ERV1 -7 443 1 7728 91 28 5 chr3 29833780 29834939 -188202219 - HERVH LTR ERV1 0 7713 6529 3893 75 11 49 chr3 29834912 29835548 -188201610 - HERVH LTR ERV1 -1333 6380 5769 * 1223 95 6 0 chr3 29835544 29835723 -188201435 - HERVH LTR ERV1 -3046 4667 4488 * 3214 111 2 6 chr3 29835725 29836229 -188200929 - HERVH LTR ERV1 -3720 3993 3492 898 109 27 0 chr3 29836219 29836366 -188200792 - HERVH LTR ERV1 -4423 3290 3140 * 10252 103 5 12 chr3 29836345 29837944 -188199214 - HERVH LTR ERV1 -4718 2995 1409 551 88 0 0 chr3 29837931 29838011 -188199147 - HERVH LTR ERV1 -7633 80 1 * 2521 103 100 5 chr3 29838013 29838422 -188198736 - LTR7 LTR ERV1 -2 448 1 335 223 29 0 chr3 29838425 29838528 -188198630 + L1MA10 LINE L1 6228 6333 -1 25 51 0 0 chr3 29838604 29838643 -188198515 + AT_rich Low_complexity Low_complexity 1 39 0 575 274 67 79 chr3 29838643 29839136 -188198022 - L1MC4a LINE L1 -1893 5915 5429 520 146 10 0 chr3 29839385 29839481 -188197677 + MLT1B LTR MaLR 56 152 -238 * 542 176 0 9 chr3 29839473 29839581 -188197577 + MLT1B LTR MaLR 67 173 -217 933 156 0 0 chr3 29839584 29839725 -188197433 + FRAM SINE Alu 31 171 -5 896 171 39 49 chr3 29839762 29839795 -188197363 + MLT1B LTR MaLR 188 220 -170 4005 136 60 35 chr3 29839795 29840555 -188196603 - MER4E LTR ERV1 0 779 1 896 171 39 49 chr3 29840555 29840726 -188196432 + MLT1B LTR MaLR 220 390 0 600 262 99 0 chr3 29840969 29841141 -188196017 + MER5A DNA MER1_type 1 189 0 416 305 99 33 chr3 29841282 29841495 -188195663 + MIR SINE MIR 13 239 -23 7674 104 122 87 chr3 29841592 29843233 -188193925 - pTR5 LTR ERV1 0 2438 741 12742 149 58 1 chr3 29843377 29845665 -188191493 + Tigger1 DNA MER2_type 1 2418 0 489 306 25 15 chr3 29845767 29845963 -188191195 + MLT1J2 LTR MaLR 2 199 -251 31 0 0 0 chr3 29846187 29846218 -188190940 + AT_rich Low_complexity Low_complexity 1 31 0 2133 135 3 3 chr3 29846782 29847094 -188190064 + AluSq SINE Alu 2 313 0 23 0 0 0 chr3 29847186 29847209 -188189949 + AT_rich Low_complexity Low_complexity 1 23 0 354 350 107 20 chr3 29847919 29848116 -188189042 - MIR SINE MIR -24 238 25 210 317 148 21 chr3 29848117 29848259 -188188899 - L3 LINE CR1 -19 1558 1399 715 296 79 12 chr3 29848323 29848563 -188188595 + MIR SINE MIR 2 257 -5 576 277 109 16 chr3 29848600 29848784 -188188374 - MIR SINE MIR -45 217 17 1857 123 3 68 chr3 29850104 29850434 -188186724 - AluSx SINE Alu 0 312 1 188 350 29 102 chr3 29850437 29850683 -188186475 + L2 LINE L2 2999 3226 -46 392 299 35 65 chr3 29851317 29851518 -188185640 - MIR SINE MIR 0 262 68 324 0 0 0 chr3 29852070 29852106 -188185052 + (TG)n Simple_repeat Simple_repeat 2 37 0 219 157 0 36 chr3 29852120 29852203 -188184955 + (TA)n Simple_repeat Simple_repeat 2 81 0 430 281 92 30 chr3 29852485 29852649 -188184509 - MER5A DNA MER1_type -15 174 1 24 32 0 0 chr3 29852666 29852697 -188184461 + AT_rich Low_complexity Low_complexity 1 31 0 207 162 0 0 chr3 29853323 29853360 -188183798 + (CAT)n Simple_repeat Simple_repeat 3 39 0 11835 207 33 39 chr3 29853705 29857613 -188179545 + L1MA4A LINE L1 7 3938 -2995 2023 116 22 0 chr3 29857613 29857920 -188179238 + AluSx SINE Alu 1 313 0 11835 207 33 39 chr3 29857920 29858278 -188178880 + L1MA4A LINE L1 3938 4297 -2636 1716 188 24 13 chr3 29858278 29858576 -188178582 + AluJb SINE Alu 1 301 -11 11835 207 33 39 chr3 29858576 29859332 -188177826 + L1MA4A LINE L1 4297 5056 -1877 339 25 0 0 chr3 29859332 29859372 -188177786 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 2152 101 0 18 chr3 29859379 29859665 -188177493 - AluSc SINE Alu -28 281 1 11835 207 33 39 chr3 29859665 29860676 -188176482 + L1MA4A LINE L1 5062 6023 -910 2144 134 0 0 chr3 29860676 29860974 -188176184 + AluSx SINE Alu 1 298 -14 11835 207 33 39 chr3 29860974 29861141 -188176017 + L1MA4A LINE L1 6023 6190 -743 189 0 0 0 chr3 29862150 29862171 -188174987 + (A)n Simple_repeat Simple_repeat 1 21 0 4090 167 22 10 chr3 29862171 29862981 -188174177 + L1MA4A LINE L1 6178 6997 -8 287 270 71 32 chr3 29863623 29863749 -188173409 + LTR16A1 LTR ERVL 327 457 0 1791 185 31 62 chr3 29863987 29864469 -188172689 + MLT1C LTR MaLR 1 467 0 189 0 0 0 chr3 29866093 29866114 -188171044 + (T)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr3 29868226 29868248 -188168910 + AT_rich Low_complexity Low_complexity 1 22 0 327 25 0 0 chr3 29869653 29869693 -188167465 + (CAAAA)n Simple_repeat Simple_repeat 5 44 0 2915 9 0 0 chr3 29871479 29871796 -188165362 - AluYb8 SINE Alu -1 317 1 227 307 52 52 chr3 29872719 29872872 -188164286 - MIR SINE MIR -101 161 9 21 0 0 0 chr3 29873051 29873072 -188164086 + AT_rich Low_complexity Low_complexity 1 21 0 652 119 17 8 chr3 29874593 29874711 -188162447 + CT-rich Low_complexity Low_complexity 3 121 0 24 53 0 0 chr3 29875253 29875291 -188161867 + AT_rich Low_complexity Low_complexity 1 38 0 21 57 0 0 chr3 29875523 29875558 -188161600 + AT_rich Low_complexity Low_complexity 1 35 0 180 125 0 0 chr3 29876817 29876849 -188160309 + (CTG)n Simple_repeat Simple_repeat 2 33 0 615 111 30 0 chr3 29877825 29877924 -188159234 - L1PA13 LINE L1 -4 6159 6058 4265 144 9 0 chr3 29877932 29878624 -188158534 + L1P LINE L1 3613 4310 -1836 382 73 15 15 chr3 29879717 29879785 -188157373 + (TA)n Simple_repeat Simple_repeat 2 69 0 2162 116 0 3 chr3 29879785 29880079 -188157079 - AluSg1 SINE Alu -16 293 1 189 195 0 0 chr3 29880821 29880862 -188156296 + (TGGA)n Simple_repeat Simple_repeat 3 43 0 219 186 0 0 chr3 29881158 29881201 -188155957 + GA-rich Low_complexity Low_complexity 4 46 0 192 179 0 0 chr3 29883328 29883367 -188153791 + (CA)n Simple_repeat Simple_repeat 2 40 0 554 260 117 0 chr3 29883700 29883854 -188153304 - MIR SINE MIR -16 246 75 22 0 0 0 chr3 29884658 29884680 -188152478 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 29884712 29884733 -188152425 + AT_rich Low_complexity Low_complexity 1 21 0 663 277 27 27 chr3 29884821 29885113 -188152045 - L1ME4a LINE L1 -268 5853 5562 658 246 86 37 chr3 29886884 29887071 -188150087 + MER3 DNA MER1_type 14 209 0 210 348 72 0 chr3 29887375 29887444 -188149714 + L2 LINE L2 3149 3222 -50 205 284 263 0 chr3 29887536 29887631 -188149527 + MIR SINE MIR 17 136 -126 302 333 0 10 chr3 29888535 29888637 -188148521 - MIR SINE MIR -83 125 25 1121 261 51 20 chr3 29889053 29889667 -188147491 + MER97a DNA MER1_type? 1 674 -220 595 269 53 0 chr3 29889652 29889823 -188147335 + LTR16C LTR ERVL 312 491 0 * 198 282 90 13 chr3 29890533 29890611 -188146547 + MER5B DNA MER1_type 88 171 -7 1755 150 10 29 chr3 29890722 29891028 -188146130 - AluJo SINE Alu -8 304 5 222 37 0 0 chr3 29891608 29891635 -188145523 + (TG)n Simple_repeat Simple_repeat 2 28 0 267 277 169 38 chr3 29891774 29891958 -188145200 + MIR SINE MIR 34 241 -21 21 82 0 0 chr3 29894582 29894631 -188142527 + AT_rich Low_complexity Low_complexity 1 49 0 207 0 0 0 chr3 29894763 29894786 -188142372 + (A)n Simple_repeat Simple_repeat 1 23 0 23 54 0 0 chr3 29895432 29895469 -188141689 + AT_rich Low_complexity Low_complexity 1 37 0 2280 184 49 2 chr3 29895750 29896216 -188140942 + L1MC3 LINE L1 7290 7777 -8 229 303 0 15 chr3 29896465 29896531 -188140627 - L2 LINE L2 -5 3308 3244 259 282 99 0 chr3 29896625 29896696 -188140462 + L2 LINE L2 3220 3297 -16 373 243 171 39 chr3 29896739 29896920 -188140238 - MIR SINE MIR -38 224 20 32 26 0 0 chr3 29896926 29896965 -188140193 + AT_rich Low_complexity Low_complexity 1 39 0 252 0 0 0 chr3 29897954 29897982 -188139176 + (CAAAAA)n Simple_repeat Simple_repeat 1 28 0 330 222 0 0 chr3 29898293 29898383 -188138775 + (TG)n Simple_repeat Simple_repeat 2 91 0 262 191 111 0 chr3 29898823 29898886 -188138272 + MER115 DNA AcHobo 616 685 -8 2290 97 0 7 chr3 29899547 29899846 -188137312 - AluSg SINE Alu -13 297 1 2242 111 0 7 chr3 29899846 29900153 -188137005 - AluSx SINE Alu -7 305 1 1030 215 0 0 chr3 29901477 29901663 -188135495 - MER5A DNA MER1_type -1 188 3 444 239 18 26 chr3 29901775 29901888 -188135270 + MER81 DNA DNA 3 114 0 2288 108 3 0 chr3 29901954 29902259 -188134899 - AluSx SINE Alu -6 306 1 209 200 20 0 chr3 29905826 29905876 -188131282 + (TGAA)n Simple_repeat Simple_repeat 3 53 0 286 325 50 0 chr3 29907214 29907334 -188129824 - MIR SINE MIR -74 188 63 188 333 83 0 chr3 29907713 29907797 -188129361 + L2 LINE L2 2694 2784 -530 3905 212 47 30 chr3 29907797 29909836 -188127322 + L1MB7 LINE L1 4049 6167 -17 1115 271 30 107 chr3 29909842 29910022 -188127136 + L2 LINE L2 2773 2965 -348 11754 33 5 0 chr3 29910022 29912212 -188124946 + L1PA5 LINE L1 3956 6151 -3 1115 271 30 107 chr3 29912212 29912615 -188124543 + L2 LINE L2 2965 3313 0 330 26 0 0 chr3 29912802 29912841 -188124317 + (TTG)n Simple_repeat Simple_repeat 1 39 0 2048 128 0 0 chr3 29912846 29913120 -188124038 - AluSg SINE Alu -36 274 1 1670 167 3 33 chr3 29913657 29913957 -188123201 + AluJb SINE Alu 1 291 -21 1846 174 48 34 chr3 29914010 29914448 -188122710 + L1MB7 LINE L1 5741 6184 0 25 0 0 0 chr3 29914973 29914998 -188122160 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr3 29915982 29916004 -188121154 + AT_rich Low_complexity Low_complexity 1 22 0 196 338 39 42 chr3 29916382 29916573 -188120585 - MIR SINE MIR -31 231 43 1978 129 7 0 chr3 29916736 29917043 -188120115 + AluSg SINE Alu 1 309 0 2128 115 0 3 chr3 29918166 29918479 -188118679 + AluSq SINE Alu 1 312 0 30 27 0 0 chr3 29919840 29919877 -188117281 + AT_rich Low_complexity Low_complexity 1 37 0 251 209 0 0 chr3 29921479 29921522 -188115636 + 5S rRNA rRNA 1 43 -78 335 379 117 28 chr3 29921532 29921822 -188115336 + L2 LINE L2 2592 2907 -407 332 333 66 16 chr3 29922285 29922468 -188114690 - MIR3 SINE MIR -15 193 2 2313 221 46 32 chr3 29923338 29923585 -188113573 + L1ME2 LINE L1 5431 5673 -491 2274 106 3 0 chr3 29923585 29923887 -188113271 + AluSg SINE Alu 1 303 -7 2313 221 46 32 chr3 29923887 29924106 -188113052 + L1ME2 LINE L1 5673 5887 -277 2131 98 3 20 chr3 29924106 29924402 -188112756 + AluSc SINE Alu 1 291 -18 2313 221 46 32 chr3 29924402 29924648 -188112510 + L1ME2 LINE L1 5887 6154 -10 194 298 35 0 chr3 29925634 29925691 -188111467 + L2 LINE L2 3213 3271 -1 293 322 158 23 chr3 29926488 29926659 -188110499 - MIR3 SINE MIR -5 203 10 405 102 0 0 chr3 29926699 29926758 -188110400 + (TC)n Simple_repeat Simple_repeat 2 60 0 369 0 0 0 chr3 29926758 29926799 -188110359 + (CA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr3 29927508 29927529 -188109629 + AT_rich Low_complexity Low_complexity 1 21 0 776 238 99 99 chr3 29928056 29928418 -188108740 + MER57B LTR ERV1 67 428 -6 405 346 156 4 chr3 29928428 29928685 -188108473 + L2 LINE L2 2530 2825 -489 211 178 14 41 chr3 29929430 29929503 -188107655 + (TA)n Simple_repeat Simple_repeat 1 71 0 211 297 51 76 chr3 29929773 29929891 -188107267 + L2 LINE L2 3152 3266 -6 509 138 0 0 chr3 29930642 29930722 -188106436 - MADE1 DNA Mariner 0 80 1 1113 205 20 43 chr3 29932599 29932698 -188104460 + AluJb SINE Alu 40 140 -172 265 24 48 0 chr3 29932698 29932740 -188104418 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1113 205 20 43 chr3 29932740 29932894 -188104264 + AluJb SINE Alu 140 287 -25 209 393 17 0 chr3 29933570 29933687 -188103471 + L2 LINE L2 3195 3313 0 325 256 241 0 chr3 29933920 29934053 -188103105 + MLT1I LTR MaLR 218 382 -27 2280 116 0 0 chr3 29935563 29935865 -188101293 - AluSx SINE Alu -10 302 1 200 365 0 52 chr3 29936880 29936995 -188100163 - L3 LINE CR1 -75 1502 1394 672 221 13 6 chr3 29936997 29937155 -188100003 - FRAM SINE Alu -17 159 1 213 316 51 13 chr3 29937159 29937238 -188099920 - L3 LINE CR1 -177 1400 1319 * 246 320 10 41 chr3 29937222 29937319 -188099839 + L2 LINE L2 3220 3313 0 516 350 89 20 chr3 29937319 29937710 -188099448 - L3 LINE CR1 -253 1324 907 1035 241 9 5 chr3 29937710 29937922 -188099236 + MER58A DNA MER1_type 1 213 -11 2813 240 125 31 chr3 29938291 29939418 -188097740 - L1MD2 LINE L1 -16 6343 5098 1687 225 199 42 chr3 29939427 29940041 -188097117 - LTR41 LTR ERVL -6 767 58 807 279 13 96 chr3 29940209 29940607 -188096551 - L1MDa LINE L1 -6162 378 14 191 256 23 0 chr3 29941176 29941219 -188095939 - L2 LINE L2 -18 3254 3211 314 365 7 0 chr3 29942117 29942254 -188094904 - L3 LINE CR1 -3 1574 1437 225 313 87 35 chr3 29942353 29942468 -188094690 - L2 LINE L2 -41 3272 3152 314 307 89 34 chr3 29942503 29942682 -188094476 - L3 LINE CR1 -193 1384 1196 447 306 69 46 chr3 29943168 29943384 -188093774 + MIR SINE MIR 31 251 -11 273 75 0 0 chr3 29943793 29943833 -188093325 + (CA)n Simple_repeat Simple_repeat 2 41 0 27 0 0 0 chr3 29945611 29945638 -188091520 + AT_rich Low_complexity Low_complexity 1 27 0 889 180 0 0 chr3 29945654 29945793 -188091365 - AluJo SINE Alu -38 274 136 596 255 176 30 chr3 29945868 29946135 -188091023 + MLT1G1 LTR MaLR 42 347 -248 651 247 68 0 chr3 29947067 29947213 -188089945 + MER58A DNA MER1_type 2 157 0 207 69 0 0 chr3 29947397 29947426 -188089732 + (CA)n Simple_repeat Simple_repeat 2 30 0 183 62 21 62 chr3 29947852 29947900 -188089258 + (CAAAAA)n Simple_repeat Simple_repeat 4 49 0 1747 156 33 4 chr3 29947963 29948279 -188088879 + AluSx SINE Alu 1 324 0 750 168 15 0 chr3 29949094 29949225 -188087933 - AluJo SINE Alu -169 133 1 227 333 130 0 chr3 29950013 29950136 -188087022 + MIR SINE MIR 35 173 -89 3781 223 8 1 chr3 29950826 29951705 -188085453 + L1PA15 LINE L1 2798 3682 -2464 256 125 31 0 chr3 29951710 29951774 -188085384 + (TA)n Simple_repeat Simple_repeat 2 67 0 447 118 0 50 chr3 29951808 29951927 -188085231 + (TA)n Simple_repeat Simple_repeat 1 113 0 342 214 0 61 chr3 29951928 29952026 -188085132 + L1MC4 LINE L1 6614 6705 -1337 203 86 0 29 chr3 29952027 29952062 -188085096 + (TA)n Simple_repeat Simple_repeat 2 35 0 7479 199 20 18 chr3 29952071 29953025 -188084133 + L1PA15 LINE L1 3697 4647 -1518 2017 146 0 13 chr3 29953025 29953334 -188083824 + AluSx SINE Alu 1 305 -7 7479 199 20 18 chr3 29953334 29954158 -188083000 + L1PA15 LINE L1 4647 5481 -684 2125 76 0 18 chr3 29954158 29954433 -188082725 + AluSc SINE Alu 35 304 -5 7479 199 20 18 chr3 29954433 29955120 -188082038 + L1PA15 LINE L1 5481 6165 0 3882 131 44 3 chr3 29956220 29956839 -188080319 + LTR9B LTR ERV1 1 644 0 22 0 0 0 chr3 29957326 29957348 -188079810 + AT_rich Low_complexity Low_complexity 1 22 0 429 204 11 10 chr3 29957472 29957569 -188079589 + MER34 LTR ERV1 1 92 -450 465 220 96 39 chr3 29957572 29957859 -188079299 + LTR48 LTR ERV1 166 491 -153 211 269 0 0 chr3 29959752 29959804 -188077354 + MIR3 SINE MIR 146 197 -11 208 245 102 48 chr3 29960657 29960804 -188076354 - L2 LINE L2 -962 2352 2198 3840 183 20 19 chr3 29960804 29961538 -188075620 + MER49 LTR ERV1 177 911 -12 918 242 175 14 chr3 29961598 29961895 -188075263 + MLT1I LTR MaLR 63 407 -2 22 0 0 0 chr3 29962202 29962224 -188074934 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 29962527 29962555 -188074603 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 29962807 29962829 -188074329 + AT_rich Low_complexity Low_complexity 1 22 0 436 294 0 16 chr3 29963072 29963198 -188073960 - FLAM_A SINE Alu -9 124 1 184 0 97 0 chr3 29963465 29963496 -188073662 + T-rich Low_complexity Low_complexity 2 35 0 3500 102 30 26 chr3 29963787 29964353 -188072805 + LTR24B LTR ERV1 1 568 -8 721 74 0 0 chr3 29964432 29964527 -188072631 - AluY SINE Alu -4 307 213 2477 77 0 0 chr3 29967331 29967630 -188069528 + AluSc SINE Alu 3 301 -8 191 32 65 0 chr3 29968673 29968704 -188068454 + A-rich Low_complexity Low_complexity 2 34 0 27 0 0 0 chr3 29968932 29968959 -188068199 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr3 29968987 29969015 -188068143 + AT_rich Low_complexity Low_complexity 1 28 0 1802 186 12 66 chr3 29969884 29970308 -188066850 + MER57A LTR ERV1 3 403 0 27 49 0 0 chr3 29970931 29970972 -188066186 + AT_rich Low_complexity Low_complexity 1 41 0 274 132 0 0 chr3 29970983 29971021 -188066137 + MER34C LTR ERV1 1 38 -547 2416 163 72 118 chr3 29971024 29971772 -188065386 + LTR8A LTR ERV1 1 714 -13 * 2624 156 72 40 chr3 29971767 29972311 -188064847 + MER34C LTR ERV1 22 582 -3 27 49 0 0 chr3 29972422 29972463 -188064695 + AT_rich Low_complexity Low_complexity 1 41 0 748 249 21 47 chr3 29973337 29973530 -188063628 + MER5A DNA MER1_type 1 188 -1 180 333 0 0 chr3 29975587 29975632 -188061526 + L2 LINE L2 2923 2967 -305 301 278 0 82 chr3 29976805 29976902 -188060256 - L2 LINE L2 -1 3271 3183 1361 185 63 35 chr3 29976933 29977220 -188059938 + AluJo SINE Alu 1 295 -17 2087 130 0 7 chr3 29977807 29978099 -188059059 - AluSg SINE Alu -19 291 2 217 348 90 28 chr3 29978614 29978792 -188058366 - MIR SINE MIR -58 204 16 543 330 82 54 chr3 29979115 29979760 -188057398 - L2 LINE L2 -456 2858 2196 21 57 0 0 chr3 29980545 29980580 -188056578 + AT_rich Low_complexity Low_complexity 1 35 0 2403 73 13 0 chr3 29980868 29981169 -188055989 + AluSp SINE Alu 1 305 -8 182 210 123 49 chr3 29981235 29981316 -188055842 + MER5C DNA MER1_type 36 122 -202 456 304 44 20 chr3 29981973 29982177 -188054981 - L2 LINE L2 -1227 2087 1879 237 132 0 0 chr3 29982626 29982664 -188054494 + L2 LINE L2 3270 3307 -6 583 206 16 8 chr3 29983445 29983571 -188053587 - MIR SINE MIR -110 152 26 359 306 60 99 chr3 29983787 29984222 -188052936 + MLT1J1 LTR MaLR 29 446 0 368 286 31 20 chr3 29985240 29985338 -188051820 + MIR SINE MIR 43 141 -121 2370 169 24 9 chr3 29985352 29985772 -188051386 + MSTB LTR MaLR 1 426 0 4442 185 32 3 chr3 29986645 29987527 -188049631 + L1MC1 LINE L1 5417 6323 -10 204 40 0 0 chr3 29987529 29987554 -188049604 + (GA)n Simple_repeat Simple_repeat 1 25 0 520 220 76 0 chr3 29987665 29987797 -188049361 + MLT1L LTR MaLR 423 564 -51 205 296 93 0 chr3 29988237 29988291 -188048867 - L2 LINE L2 -5 3308 3250 198 0 0 0 chr3 29988809 29988831 -188048327 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 333 305 102 50 chr3 29989472 29989673 -188047485 - MIR SINE MIR -17 245 35 1111 282 86 15 chr3 29992028 29992425 -188044733 - L2 LINE L2 0 3313 2889 878 197 113 84 chr3 29992425 29992587 -188044571 - MER96B DNA MER1_type? 0 417 261 2215 94 0 38 chr3 29992587 29992907 -188044251 - AluSx SINE Alu -4 308 1 878 197 113 84 chr3 29992907 29993125 -188044033 - MER96B DNA MER1_type? -156 261 26 1789 264 104 16 chr3 29993140 29993757 -188043401 - L2 LINE L2 -418 2896 2226 35 41 0 0 chr3 29995136 29995185 -188041973 + AT_rich Low_complexity Low_complexity 1 49 0 556 232 8 8 chr3 29996731 29996856 -188040302 + L1MC1 LINE L1 6204 6328 -5 1295 212 10 26 chr3 29997793 29998099 -188039059 - AluJo SINE Alu 0 312 12 1218 178 98 46 chr3 29998099 29998425 -188038733 + MER61A LTR ERV1 1 343 0 2067 148 12 96 chr3 29998425 29998493 -188038665 + MER61A-int LTR ERV1 1 73 -5144 1943 97 14 17 chr3 29998493 29998782 -188038376 + AluSx SINE Alu 1 288 -24 2067 148 12 96 chr3 29998782 29999410 -188037748 + MER61A-int LTR ERV1 73 777 -4440 335 70 0 0 chr3 29999403 29999446 -188037712 + MER61A-int LTR ERV1 1320 1362 -3855 * 20577 105 40 15 chr3 29999462 30003068 -188034090 + MER61A-int LTR ERV1 1655 5201 -16 188 35 35 0 chr3 30003068 30003097 -188034061 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2025 96 22 0 chr3 30003103 30003373 -188033785 - AluSx SINE Alu -36 276 1 1430 148 126 19 chr3 30003398 30003708 -188033450 + MER61A LTR ERV1 1 343 0 200 336 47 28 chr3 30004285 30004392 -188032766 + MIR SINE MIR 35 143 -65 267 81 0 0 chr3 30005474 30005511 -188031647 - tRNA-Glu-GAG tRNA tRNA -38 37 1 2089 123 0 0 chr3 30005958 30006243 -188030915 - AluSg SINE Alu -25 285 1 1536 182 20 135 chr3 30008211 30008705 -188028453 + MLT1D LTR MaLR 1 437 -68 11531 158 17 4 chr3 30008705 30010678 -188026480 - Tigger1 DNA MER2_type -1 2417 420 29969 109 27 65 chr3 30010679 30017063 -188020095 - L1PA7 LINE L1 0 6154 12 1734 161 34 0 chr3 30017072 30017364 -188019794 - Tigger1 DNA MER2_type -1988 430 129 429 136 0 0 chr3 30017380 30017446 -188019712 + MLT1D LTR MaLR 440 505 0 30 27 0 0 chr3 30017731 30017768 -188019390 + AT_rich Low_complexity Low_complexity 1 37 0 408 337 76 12 chr3 30017833 30018005 -188019153 + L3 LINE CR1 1382 1564 -13 23 33 0 0 chr3 30018188 30018218 -188018940 + AT_rich Low_complexity Low_complexity 1 30 0 2053 187 0 6 chr3 30018488 30018851 -188018307 + MLT1A1 LTR MaLR 1 361 -4 32 0 0 0 chr3 30019780 30019812 -188017346 + AT_rich Low_complexity Low_complexity 1 32 0 758 188 0 0 chr3 30020877 30021005 -188016153 - FRAM SINE Alu -48 128 1 215 253 103 35 chr3 30021053 30021140 -188016018 + MIR SINE MIR 167 259 -3 184 294 0 59 chr3 30021573 30021641 -188015517 - MIR SINE MIR 0 262 199 1899 122 31 17 chr3 30021805 30022093 -188015065 + AluSx SINE Alu 1 292 -20 1362 235 47 41 chr3 30022151 30022598 -188014560 - L1ME1 LINE L1 -4 6162 5713 23 54 0 0 chr3 30023844 30023881 -188013277 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr3 30024249 30024270 -188012888 + AT_rich Low_complexity Low_complexity 1 21 0 5823 27 0 1 chr3 30024453 30025157 -188012001 - L1P LINE L1 -3425 2721 2019 3129 35 3 0 chr3 30025157 30025528 -188011630 + L1PA3 LINE L1 5779 6150 -5 189 240 107 40 chr3 30026164 30026239 -188010919 - MIR SINE MIR -109 99 20 1269 264 124 7 chr3 30026468 30027014 -188010144 - L1ME3 LINE L1 0 6162 5553 1318 275 78 70 chr3 30027018 30027701 -188009457 - MER21B LTR ERV1 -149 714 27 412 202 12 0 chr3 30027896 30027980 -188009178 + MER39 LTR ERV1 1 85 -622 * 1139 165 87 13 chr3 30027976 30028206 -188008952 + MER39 LTR ERV1 461 707 0 633 336 11 19 chr3 30028305 30028567 -188008591 - MIR SINE MIR 0 262 3 2321 94 0 0 chr3 30029240 30029538 -188007620 + AluSq SINE Alu 1 298 -15 1270 246 67 41 chr3 30029565 30030280 -188006878 + L1MC5 LINE L1 7194 7927 -34 22 0 0 0 chr3 30030315 30030337 -188006821 + AT_rich Low_complexity Low_complexity 1 22 0 456 325 92 55 chr3 30030975 30031323 -188005835 + L2 LINE L2 2904 3264 -8 6056 137 14 23 chr3 30032332 30033266 -188003892 - L1MA5 LINE L1 -2 6298 5379 1789 169 3 23 chr3 30033266 30033574 -188003584 - AluJb SINE Alu -6 306 5 6056 137 14 23 chr3 30033574 30034362 -188002796 - L1MA5 LINE L1 -921 5379 4585 24 0 0 0 chr3 30035055 30035079 -188002079 + AT_rich Low_complexity Low_complexity 1 24 0 1379 242 120 19 chr3 30035081 30035499 -188001659 - MLT1C LTR MaLR -7 460 1 303 243 54 0 chr3 30036213 30036287 -188000871 + L1MC4 LINE L1 6626 6703 -1339 183 167 42 42 chr3 30036958 30037006 -188000152 + L2 LINE L2 3255 3302 -11 288 193 68 45 chr3 30037256 30037344 -187999814 - MER5B DNA MER1_type -6 172 83 313 290 48 11 chr3 30037492 30037657 -187999501 - MIR SINE MIR -62 146 5 249 108 0 0 chr3 30038216 30038253 -187998905 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2043 99 37 0 chr3 30038255 30038528 -187998630 - AluSg SINE Alu -27 283 1 32 57 0 0 chr3 30039196 30039249 -187997909 + AT_rich Low_complexity Low_complexity 1 53 0 2064 100 3 17 chr3 30039402 30039741 -187997417 - AluSx SINE Alu 0 335 1 22 0 0 0 chr3 30039868 30039890 -187997268 + AT_rich Low_complexity Low_complexity 1 22 0 298 29 0 0 chr3 30039931 30039966 -187997192 - U2 snRNA snRNA -153 35 1 1399 215 9 57 chr3 30041349 30041499 -187995659 + AluJo SINE Alu 1 130 -182 186 43 0 0 chr3 30041499 30041522 -187995636 + (CA)n Simple_repeat Simple_repeat 2 24 0 1399 215 9 57 chr3 30041522 30041687 -187995471 + AluJo SINE Alu 130 301 -11 329 266 106 18 chr3 30043491 30043604 -187993554 - L2 LINE L2 -40 3232 3110 432 318 85 30 chr3 30043951 30044351 -187992807 + L1ME3A LINE L1 4415 4836 -1310 1010 303 50 35 chr3 30044375 30044771 -187992387 - L2 LINE L2 0 3313 2912 273 311 84 4 chr3 30044790 30045015 -187992143 + L1ME3A LINE L1 4879 5121 -1025 701 270 105 58 chr3 30045108 30045697 -187991461 + L1ME3A LINE L1 5268 5884 -286 24 53 0 0 chr3 30046269 30046307 -187990851 + AT_rich Low_complexity Low_complexity 1 38 0 1302 214 31 10 chr3 30046376 30046665 -187990493 + AluJo SINE Alu 1 295 -17 342 282 129 24 chr3 30047440 30047610 -187989548 + MIR SINE MIR 43 230 -32 189 94 0 0 chr3 30048006 30048038 -187989120 + (A)n Simple_repeat Simple_repeat 1 32 0 501 266 25 60 chr3 30049782 30049981 -187987177 - LTR16A1 LTR ERVL 0 457 266 368 143 42 17 chr3 30050884 30051003 -187986155 + (TA)n Simple_repeat Simple_repeat 1 122 0 1074 198 156 8 chr3 30051978 30052241 -187984917 - AluJb SINE Alu 0 302 1 25 75 0 0 chr3 30052476 30052529 -187984629 + AT_rich Low_complexity Low_complexity 1 53 0 24 67 0 0 chr3 30054841 30054886 -187982272 + AT_rich Low_complexity Low_complexity 1 45 0 223 240 0 0 chr3 30055034 30055084 -187982074 - MIR SINE MIR -108 154 105 3970 84 20 7 chr3 30055273 30055820 -187981338 + MER41A LTR ERV1 1 554 0 262 286 113 8 chr3 30056192 30056440 -187980718 + HAL1 LINE L1 981 1254 -1253 2205 128 31 0 chr3 30057412 30057765 -187979393 - THE1B LTR MaLR 0 364 1 230 255 39 98 chr3 30057889 30057976 -187979182 - MIR SINE MIR -94 114 32 2878 12 0 3 chr3 30057976 30058295 -187978863 - AluYb8 SINE Alu 0 318 1 230 255 39 98 chr3 30058295 30058309 -187978849 - MIR SINE MIR -176 32 19 526 303 108 48 chr3 30058674 30059107 -187978051 + L1MC4a LINE L1 5472 5930 -1878 362 336 29 0 chr3 30059306 30059443 -187977715 + MLT1J2 LTR MaLR 51 191 -259 237 263 26 13 chr3 30059558 30059634 -187977524 + MLT1I LTR MaLR 319 395 -14 244 313 121 38 chr3 30059963 30060302 -187976856 - L2 LINE L2 -1216 2098 1732 410 235 12 0 chr3 30061105 30061186 -187975972 + MIR SINE MIR 105 186 -76 379 316 70 9 chr3 30061670 30061885 -187975273 + LTR33 LTR ERVL 294 521 0 322 280 72 96 chr3 30061970 30062095 -187975063 - MIR SINE MIR -65 143 21 212 179 0 0 chr3 30062625 30062664 -187974494 + (TA)n Simple_repeat Simple_repeat 1 39 0 328 291 51 32 chr3 30062735 30062893 -187974265 - MIR SINE MIR -56 206 46 2056 122 26 3 chr3 30063468 30063771 -187973387 - AluSg SINE Alu 0 310 1 478 338 88 4 chr3 30063892 30064120 -187973038 + MIR SINE MIR 11 257 -5 464 323 69 67 chr3 30065044 30065505 -187971653 + MLT1K LTR MaLR 125 586 -2 458 239 72 43 chr3 30065805 30065881 -187971277 - MIR SINE MIR -18 244 161 1499 236 129 53 chr3 30065881 30065951 -187971207 - MLT1E LTR MaLR 0 593 530 2294 66 0 30 chr3 30065951 30066253 -187970905 + AluY SINE Alu 1 293 -18 1499 236 129 53 chr3 30066253 30066733 -187970425 - MLT1E LTR MaLR -63 530 1 458 239 72 43 chr3 30066733 30066794 -187970364 - MIR SINE MIR -101 161 103 322 302 11 110 chr3 30067447 30067556 -187969602 - MIR SINE MIR -11 251 166 1968 95 0 69 chr3 30067556 30067860 -187969298 - AluSg SINE Alu -27 283 1 322 302 11 110 chr3 30067860 30067932 -187969226 - MIR SINE MIR -96 166 88 219 69 0 0 chr3 30068442 30068471 -187968687 + (T)n Simple_repeat Simple_repeat 1 29 0 1348 294 20 31 chr3 30068538 30068991 -187968167 - MER69 DNA AcHobo -778 448 1 1646 157 74 84 chr3 30069541 30069935 -187967223 - MLT1B LTR MaLR 0 390 1 2195 110 3 0 chr3 30070049 30070349 -187966809 - AluSc SINE Alu -8 301 1 267 270 122 0 chr3 30070386 30070460 -187966698 - MLT1J LTR MaLR -349 162 80 2098 165 61 20 chr3 30070511 30070918 -187966240 + MSTB LTR MaLR 1 424 -2 216 0 0 0 chr3 30071256 30071280 -187965878 + (TG)n Simple_repeat Simple_repeat 2 25 0 457 290 62 7 chr3 30072766 30072911 -187964247 + MIR3 SINE MIR 9 161 -47 575 311 106 8 chr3 30072917 30073152 -187964006 - MIR SINE MIR 0 262 5 192 312 18 37 chr3 30073252 30073361 -187963797 + MIR3 SINE MIR 10 116 -92 1179 220 38 107 chr3 30073495 30073991 -187963167 + MLT1C LTR MaLR 6 467 0 21 0 0 0 chr3 30074075 30074096 -187963062 + AT_rich Low_complexity Low_complexity 1 21 0 2224 229 16 20 chr3 30074310 30074807 -187962351 + LTR31 LTR ERV1 109 603 -16 303 28 0 0 chr3 30074866 30074902 -187962256 + (TG)n Simple_repeat Simple_repeat 2 37 0 297 0 0 0 chr3 30077017 30077050 -187960108 + (TG)n Simple_repeat Simple_repeat 1 33 0 285 29 0 0 chr3 30077328 30077362 -187959796 + (TG)n Simple_repeat Simple_repeat 1 34 0 399 295 152 28 chr3 30078496 30078713 -187958445 + MIR SINE MIR 2 245 -17 1536 168 3 63 chr3 30078833 30079149 -187958009 + AluJo SINE Alu 11 307 -5 347 310 50 0 chr3 30081230 30081330 -187955828 - MER3 DNA MER1_type -104 105 1 464 235 157 69 chr3 30081392 30081609 -187955549 - MIR SINE MIR -6 256 21 209 198 163 35 chr3 30081747 30081833 -187955325 - MIR SINE MIR -6 256 160 369 0 0 0 chr3 30082710 30082751 -187954407 + (TG)n Simple_repeat Simple_repeat 1 41 0 322 239 11 65 chr3 30083810 30083902 -187953256 + MIR SINE MIR 20 106 -102 323 355 36 12 chr3 30084088 30084254 -187952904 - MER5B DNA MER1_type -2 176 7 340 345 36 0 chr3 30084099 30084238 -187952920 + MER5A DNA MER1_type 24 167 -22 217 196 20 0 chr3 30084276 30084327 -187952831 - MIR SINE MIR 0 262 211 266 314 17 81 chr3 30085465 30085637 -187951521 - MIR SINE MIR -55 207 47 2179 119 3 10 chr3 30085656 30085968 -187951190 - AluSp SINE Alu -3 310 1 299 337 50 0 chr3 30086024 30086125 -187951033 + MIR3 SINE MIR 60 165 -43 411 325 117 10 chr3 30086237 30086434 -187950724 - MIR SINE MIR -4 258 41 370 301 88 22 chr3 30087487 30087623 -187949535 - L2 LINE L2 -1 3312 3168 207 343 57 14 chr3 30087639 30087779 -187949379 - L2 LINE L2 -88 3225 3080 1759 198 0 3 chr3 30089377 30089690 -187947468 + AluJo SINE Alu 1 312 0 587 167 29 23 chr3 30089694 30089868 -187947290 + GA-rich Low_complexity Low_complexity 4 178 0 21 36 0 0 chr3 30090300 30090328 -187946830 + AT_rich Low_complexity Low_complexity 1 28 0 220 407 23 0 chr3 30090599 30090685 -187946473 - L2 LINE L2 -22 3250 3163 736 307 13 9 chr3 30090761 30090992 -187946166 - MIR SINE MIR -2 260 29 267 0 22 44 chr3 30090997 30091042 -187946116 + (TTG)n Simple_repeat Simple_repeat 2 45 0 4803 91 12 4 chr3 30091042 30091733 -187945425 - L1PB1 LINE L1 -10 6141 5446 289 158 0 0 chr3 30091735 30091789 -187945369 - MLT2A2 LTR ERVL -8 512 403 231 175 0 0 chr3 30091804 30091861 -187945297 + (TA)n Simple_repeat Simple_repeat 1 57 0 3149 69 20 7 chr3 30091861 30092269 -187944889 - MLT2A2 LTR ERVL -40 413 1 3358 172 6 9 chr3 30092269 30093055 -187944103 - L1P5 LINE L1 -702 5449 4670 1636 237 69 18 chr3 30093677 30094170 -187942988 + LTR40a LTR ERVL 2 519 0 727 254 53 37 chr3 30094621 30094865 -187942293 + L2 LINE L2 3062 3309 -4 451 268 82 9 chr3 30094897 30095117 -187942041 - L1ME4a LINE L1 -182 5939 5704 26 50 0 0 chr3 30095263 30095303 -187941855 + AT_rich Low_complexity Low_complexity 1 40 0 180 0 0 0 chr3 30095536 30095556 -187941602 + (TTTC)n Simple_repeat Simple_repeat 2 21 0 1607 208 50 14 chr3 30095876 30096236 -187940922 + MLT1A2 LTR MaLR 1 373 -1 243 246 18 0 chr3 30096796 30096853 -187940305 + GA-rich Low_complexity Low_complexity 2 59 0 26 0 0 0 chr3 30096888 30096914 -187940244 + AT_rich Low_complexity Low_complexity 1 26 0 885 128 0 61 chr3 30097103 30097216 -187939942 - FLAM_C SINE Alu -173 139 36 1796 201 26 124 chr3 30097216 30097894 -187939264 + LTR9 LTR ERV1 1 612 0 885 128 0 61 chr3 30097894 30097928 -187939230 - FLAM_C SINE Alu -276 36 1 2385 176 77 15 chr3 30098061 30098579 -187938579 + L1MB3 LINE L1 5634 6183 0 442 212 0 30 chr3 30099254 30099353 -187937805 - MER3 DNA MER1_type -113 96 1 3273 181 22 0 chr3 30099519 30100110 -187937048 - MER6A DNA MER2_type -1 604 1 190 308 33 22 chr3 30101851 30101942 -187935216 - MIR SINE MIR -140 122 31 466 239 6 6 chr3 30102786 30102953 -187934205 + CT-rich Low_complexity Low_complexity 1 167 0 21 0 0 0 chr3 30103406 30103427 -187933731 + AT_rich Low_complexity Low_complexity 1 21 0 1929 137 38 32 chr3 30103547 30103919 -187933239 + THE1C LTR MaLR 1 374 -1 628 244 6 38 chr3 30104380 30104540 -187932618 - MIR SINE MIR -105 157 3 235 362 38 0 chr3 30104533 30104638 -187932520 + MER5A DNA MER1_type 4 112 -77 * 36 62 0 0 chr3 30105987 30106051 -187931107 + AT_rich Low_complexity Low_complexity 1 64 0 2555 51 0 29 chr3 30106468 30106784 -187930374 + AluY SINE Alu 1 307 -4 213 121 0 0 chr3 30106982 30107015 -187930143 + (T)n Simple_repeat Simple_repeat 1 33 0 2407 47 0 0 chr3 30107945 30108241 -187928917 - L1PA4 LINE L1 -3 6152 5857 189 195 0 0 chr3 30108744 30108785 -187928373 + (TA)n Simple_repeat Simple_repeat 1 41 0 254 237 17 0 chr3 30108951 30109010 -187928148 + (TA)n Simple_repeat Simple_repeat 2 61 0 951 197 208 4 chr3 30110054 30110323 -187926835 - MER5C DNA MER1_type 0 324 1 248 224 61 61 chr3 30110527 30110580 -187926578 - MER5B DNA MER1_type 0 178 123 180 0 0 0 chr3 30110580 30110600 -187926558 + (CAA)n Simple_repeat Simple_repeat 2 21 0 248 224 61 61 chr3 30110600 30110644 -187926514 - MER5B DNA MER1_type -54 124 81 181 291 55 0 chr3 30110697 30110752 -187926406 - MIR SINE MIR -88 174 117 22 56 0 0 chr3 30110905 30110941 -187926217 + AT_rich Low_complexity Low_complexity 1 36 0 299 366 54 37 chr3 30111208 30111457 -187925701 + MIR3 SINE MIR 12 262 0 392 274 18 18 chr3 30111615 30111728 -187925430 + L3 LINE CR1 1440 1552 -25 1838 160 18 75 chr3 30111734 30112133 -187925025 - MLT1B LTR MaLR -14 376 1 341 313 92 31 chr3 30112162 30112325 -187924833 + MIR3 SINE MIR 30 202 -6 211 132 57 0 chr3 30114018 30114071 -187923087 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 191 241 17 35 chr3 30114079 30114137 -187923021 - L2 LINE L2 0 3272 3216 240 214 0 0 chr3 30114486 30114542 -187922616 + CT-rich Low_complexity Low_complexity 2 57 0 197 344 33 33 chr3 30114565 30114655 -187922503 + L2 LINE L2 3220 3309 -4 201 267 67 0 chr3 30114930 30114975 -187922183 + MIR SINE MIR 203 250 -12 185 282 0 0 chr3 30114943 30114982 -187922176 + L2 LINE L2 3264 3302 -11 * 461 248 110 0 chr3 30115138 30115247 -187921911 + L2 LINE L2 3189 3309 -4 190 186 47 0 chr3 30115336 30115379 -187921779 + MER5A DNA MER1_type 68 112 -77 251 200 0 14 chr3 30115564 30115634 -187921524 + CT-rich Low_complexity Low_complexity 2 70 0 180 224 0 86 chr3 30116878 30116936 -187920222 + L2 LINE L2 3219 3271 -1 23 68 0 0 chr3 30117396 30117440 -187919718 + AT_rich Low_complexity Low_complexity 1 44 0 547 336 81 5 chr3 30118355 30118578 -187918580 - MIR SINE MIR -21 241 2 270 292 23 0 chr3 30118617 30118713 -187918445 - MIR SINE MIR -60 148 79 258 56 0 0 chr3 30119358 30119394 -187917764 + (TA)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr3 30119571 30119592 -187917566 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr3 30122195 30122231 -187914927 + AT_rich Low_complexity Low_complexity 1 36 0 2281 163 20 45 chr3 30124394 30124837 -187912321 + MSTB1 LTR MaLR 1 432 0 372 175 0 0 chr3 30125014 30125077 -187912081 + Alu SINE Alu 240 302 0 225 139 0 0 chr3 30125077 30125113 -187912045 + L1 LINE L1 3452 3487 -2659 21 0 0 0 chr3 30125159 30125180 -187911978 + AT_rich Low_complexity Low_complexity 1 21 0 4804 180 9 0 chr3 30125190 30126083 -187911075 + L1 LINE L1 3511 4411 -1735 1739 175 30 18 chr3 30126203 30126541 -187910617 + Tigger3(Golem) DNA MER2_type 2687 3028 -1 1511 186 0 4 chr3 30127198 30127451 -187909707 - AluJb SINE Alu -32 280 29 384 191 0 0 chr3 30128101 30128185 -187908973 + (TA)n Simple_repeat Simple_repeat 2 85 0 1981 157 0 3 chr3 30128240 30128545 -187908613 + AluJo SINE Alu 1 304 -8 1560 126 0 0 chr3 30128908 30129114 -187908044 + AluSx SINE Alu 5 210 -102 1190 278 85 17 chr3 30129224 30129868 -187907290 - L1M4 LINE L1 -1029 5117 4430 245 271 103 76 chr3 30130010 30130301 -187906857 + L1M3 LINE L1 3708 4006 -2140 9943 30 0 0 chr3 30130451 30131635 -187905523 - L1P LINE L1 -1362 4784 3601 766 261 37 0 chr3 30131773 30131991 -187905167 - L1ME3A LINE L1 -223 5947 5722 1675 120 35 0 chr3 30132061 30132344 -187904814 - L1MA8 LINE L1 -6 6285 5993 392 48 16 63 chr3 30132409 30132472 -187904686 - MADE1 DNA Mariner 0 80 21 356 333 30 0 chr3 30132479 30132713 -187904445 - L1ME3A LINE L1 -629 5541 5301 1439 170 0 0 chr3 30132734 30132958 -187904200 - AluJb SINE Alu -16 296 73 1029 230 0 5 chr3 30133058 30133267 -187903891 + L1M3 LINE L1 4773 4980 -1166 204 182 81 20 chr3 30133268 30133416 -187903742 + (TA)n Simple_repeat Simple_repeat 1 157 0 193 144 65 14 chr3 30133450 30133589 -187903569 + (TA)n Simple_repeat Simple_repeat 2 147 0 1154 203 55 93 chr3 30133589 30133958 -187903200 + L1M3 LINE L1 4969 5321 -859 1780 139 23 27 chr3 30133958 30134259 -187902899 + AluSx SINE Alu 4 303 -9 1154 203 55 93 chr3 30134259 30134463 -187902695 + L1M3 LINE L1 5321 5531 -649 3532 113 21 2 chr3 30134595 30135119 -187902039 - L1PA15 LINE L1 -5 6160 5627 21 0 0 0 chr3 30135246 30135267 -187901891 + AT_rich Low_complexity Low_complexity 1 21 0 2572 61 0 3 chr3 30135485 30135795 -187901363 - AluY SINE Alu -2 309 1 1871 125 56 11 chr3 30136236 30136523 -187900635 - AluJb SINE Alu -12 300 1 216 266 0 47 chr3 30136679 30136743 -187900415 - L2 LINE L2 -2 3311 3251 5684 18 0 0 chr3 30137509 30138168 -187898990 - L1P LINE L1 -1442 4704 4046 604 264 19 93 chr3 30138165 30138487 -187898671 - L1MDb LINE L1 -5338 1071 774 * 1305 332 56 38 chr3 30139247 30139960 -187897198 + L2 LINE L2 2032 2757 -557 672 129 0 0 chr3 30139970 30140071 -187897087 - AluSg/x SINE Alu -30 282 182 1882 153 0 3 chr3 30140184 30140471 -187896687 - AluJb SINE Alu -26 286 1 1016 282 32 42 chr3 30141109 30141489 -187895669 + LTR16A LTR ERVL 16 391 -59 206 250 36 71 chr3 30142643 30142727 -187894431 + MIR SINE MIR 170 250 -12 27 29 0 0 chr3 30143251 30143285 -187893873 + AT_rich Low_complexity Low_complexity 1 34 0 2993 283 70 3 chr3 30143632 30144307 -187892851 + MER72 LTR ERV1 1 720 -2 221 57 29 0 chr3 30144738 30144773 -187892385 + (GGAA)n Simple_repeat Simple_repeat 3 38 0 213 178 0 0 chr3 30145205 30145250 -187891908 + T-rich Low_complexity Low_complexity 1 45 0 1009 164 19 39 chr3 30146151 30146358 -187890800 - MER3 DNA MER1_type 0 209 7 332 282 92 0 chr3 30147070 30147201 -187889957 - L2 LINE L2 -1282 2032 1890 480 18 0 0 chr3 30147734 30147791 -187889367 + (TGGA)n Simple_repeat Simple_repeat 4 60 0 426 289 9 9 chr3 30148271 30148385 -187888773 - MIR SINE MIR -130 132 19 21 0 0 0 chr3 30148937 30148958 -187888200 + AT_rich Low_complexity Low_complexity 1 21 0 344 313 124 35 chr3 30149426 30149627 -187887531 - MIR SINE MIR -18 244 26 30 0 0 0 chr3 30152149 30152179 -187884979 + AT_rich Low_complexity Low_complexity 1 30 0 241 303 0 13 chr3 30152505 30152581 -187884577 + GA-rich Low_complexity Low_complexity 2 76 0 21 0 0 0 chr3 30152877 30152898 -187884260 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 30153230 30153252 -187883906 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr3 30154069 30154096 -187883062 + AT_rich Low_complexity Low_complexity 1 27 0 26 0 0 0 chr3 30154243 30154269 -187882889 + AT_rich Low_complexity Low_complexity 1 26 0 243 0 0 0 chr3 30154310 30154337 -187882821 + (A)n Simple_repeat Simple_repeat 1 27 0 201 159 0 0 chr3 30154700 30154744 -187882414 + A-rich Low_complexity Low_complexity 1 44 0 583 269 57 14 chr3 30155295 30155507 -187881651 + L3b LINE CR1 1104 1324 -259 189 322 17 0 chr3 30155664 30155723 -187881435 - MIR3 SINE MIR -5 203 144 793 221 13 72 chr3 30155726 30155961 -187881197 - MER58A DNA MER1_type 0 224 4 630 219 53 43 chr3 30155973 30156160 -187880998 - MER5A DNA MER1_type 0 189 1 1770 228 83 51 chr3 30156225 30156372 -187880786 + MLT1E2 LTR MaLR 9 150 -476 2005 105 4 0 chr3 30156372 30156639 -187880519 + AluY SINE Alu 24 291 -20 1770 228 83 51 chr3 30156639 30157078 -187880080 + MLT1E2 LTR MaLR 150 616 -10 640 35 23 0 chr3 30157378 30157465 -187879693 + (TC)n Simple_repeat Simple_repeat 1 89 0 1082 159 164 22 chr3 30159476 30159757 -187877401 - MER33 DNA MER1_type -12 312 1 624 293 29 39 chr3 30159901 30160210 -187876948 + MLT1H LTR MaLR 10 389 -206 1621 148 41 47 chr3 30160411 30160728 -187876430 - L1MC1 LINE L1 0 6333 6019 768 181 14 14 chr3 30160916 30161060 -187876098 - FRAM SINE Alu -21 155 12 280 238 59 20 chr3 30161291 30161392 -187875766 - L1MC1 LINE L1 -360 5806 5702 21 95 0 0 chr3 30161401 30161464 -187875694 + AT_rich Low_complexity Low_complexity 1 63 0 189 0 0 0 chr3 30162144 30162165 -187874993 + (A)n Simple_repeat Simple_repeat 1 21 0 447 200 350 0 chr3 30162703 30162843 -187874315 - MER5A DNA MER1_type 0 189 1 24 32 0 0 chr3 30163158 30163189 -187873969 + AT_rich Low_complexity Low_complexity 1 31 0 273 208 0 0 chr3 30163221 30163293 -187873865 + (CATA)n Simple_repeat Simple_repeat 1 72 0 996 196 16 0 chr3 30163684 30163868 -187873290 + MER5A DNA MER1_type 1 187 -2 314 375 82 35 chr3 30164000 30164598 -187872560 + L2 LINE L2 925 1550 -1764 2076 182 20 24 chr3 30164716 30165167 -187871991 - L1MB4 LINE L1 0 6180 5732 447 256 67 30 chr3 30165168 30165332 -187871826 - MIR SINE MIR -81 181 12 374 333 119 11 chr3 30166240 30166501 -187870657 + LTR16C LTR ERVL 200 488 -3 277 302 75 9 chr3 30166510 30166616 -187870542 + MIR SINE MIR 38 150 -58 1324 71 12 0 chr3 30166886 30167056 -187870102 - AluSg/x SINE Alu -4 306 135 2499 38 27 0 chr3 30167056 30167348 -187869810 - AluY SINE Alu -11 300 1 228 291 0 0 chr3 30167797 30167852 -187869306 + MIR SINE MIR 66 120 -142 218 325 57 15 chr3 30167959 30168053 -187869105 + MIR SINE MIR 23 116 -92 32 57 0 0 chr3 30168759 30168812 -187868346 + AT_rich Low_complexity Low_complexity 1 53 0 493 305 84 5 chr3 30168950 30169140 -187868018 - MIR SINE MIR -29 233 29 514 313 126 0 chr3 30169224 30169452 -187867706 + MIR SINE MIR 8 262 0 464 278 80 19 chr3 30170048 30170210 -187866948 + MIR SINE MIR 2 173 -89 369 290 101 18 chr3 30170207 30170376 -187866782 - L2 LINE L2 0 3313 3131 * 424 197 0 0 chr3 30170500 30170566 -187866592 + Charlie5 DNA MER1_type 2 67 -2545 4745 173 17 9 chr3 30170581 30171613 -187865545 + L1PB4 LINE L1 5103 6138 -18 7056 53 3 3 chr3 30171616 30172514 -187864644 + L1PA7 LINE L1 5256 6153 -1 827 161 90 5 chr3 30172601 30172812 -187864346 + Charlie5 DNA MER1_type 2335 2563 -49 2150 129 0 16 chr3 30172833 30173150 -187864008 - AluSx SINE Alu 0 312 1 459 287 0 8 chr3 30173223 30173345 -187863813 - L2 LINE L2 -251 3062 2942 283 209 52 163 chr3 30173558 30173730 -187863428 + MIR SINE MIR 33 185 -77 245 218 137 48 chr3 30173937 30174061 -187863097 + LTR33 LTR ERVL 6 140 -381 2437 86 34 23 chr3 30174175 30174526 -187862632 - THE1A LTR MaLR 0 355 1 11469 99 6 1 chr3 30174526 30176097 -187861061 - THE1A-int LTR MaLR 0 1580 1 2713 82 3 0 chr3 30176097 30176451 -187860707 - THE1A LTR MaLR 0 355 1 375 297 34 0 chr3 30176483 30176601 -187860557 + LTR33 LTR ERVL 385 506 -15 187 250 39 0 chr3 30176937 30176989 -187860169 - MIR SINE MIR -204 58 5 986 177 0 0 chr3 30177508 30177689 -187859469 - AluSg/x SINE Alu 0 313 133 523 259 77 28 chr3 30177694 30177837 -187859321 + L2 LINE L2 3164 3313 0 745 301 21 14 chr3 30177972 30178251 -187858907 - Charlie8 DNA MER1_type -2136 281 1 389 284 104 22 chr3 30178585 30178719 -187858439 - MIR3 SINE MIR -12 196 52 313 143 48 0 chr3 30179289 30179352 -187857806 - L1MB8 LINE L1 0 6178 6113 477 71 24 12 chr3 30179805 30179889 -187857269 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 442 261 60 27 chr3 30180937 30181121 -187856037 + MIR3 SINE MIR 8 197 -11 415 320 160 0 chr3 30181264 30181439 -187855719 - MIR SINE MIR -19 243 41 225 0 0 0 chr3 30181875 30181900 -187855258 + (CA)n Simple_repeat Simple_repeat 1 25 0 249 33 0 0 chr3 30182499 30182529 -187854629 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1659 245 40 21 chr3 30182745 30183275 -187853883 + L1ME1 LINE L1 5571 6110 -56 296 369 56 10 chr3 30183703 30183901 -187853257 - L3 LINE CR1 -10 1567 1361 198 205 96 108 chr3 30183969 30184052 -187853106 + MIR SINE MIR 59 140 -122 2539 53 0 0 chr3 30184053 30184354 -187852804 - AluY SINE Alu -10 301 1 23 68 0 0 chr3 30185532 30185576 -187851582 + AT_rich Low_complexity Low_complexity 1 44 0 224 328 40 52 chr3 30185768 30185942 -187851216 + L2 LINE L2 2488 2659 -655 3339 245 137 133 chr3 30186382 30187846 -187849312 + L2 LINE L2 373 1829 -1484 628 273 17 25 chr3 30187846 30188084 -187849074 - L1MA9 LINE L1 -38 6274 6039 3339 245 137 133 chr3 30188084 30188122 -187849036 + L2 LINE L2 1829 1865 -1448 2861 170 19 16 chr3 30188122 30188704 -187848454 - L1PB4 LINE L1 -7 6149 5566 3339 245 137 133 chr3 30188704 30189788 -187847370 + L2 LINE L2 1865 3237 -76 182 61 0 30 chr3 30189788 30189821 -187847337 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 3339 245 137 133 chr3 30189821 30189851 -187847307 + L2 LINE L2 3237 3265 -48 1991 86 0 41 chr3 30189860 30190127 -187847031 + AluSc SINE Alu 6 261 -48 181 298 0 0 chr3 30190151 30190198 -187846960 + L2 LINE L2 3226 3272 0 248 234 31 47 chr3 30190487 30190551 -187846607 + L2 LINE L2 2685 2747 -567 2158 132 48 25 chr3 30190565 30190921 -187846237 + THE1B LTR MaLR 1 364 0 825 260 6 0 chr3 30190936 30191117 -187846041 - MER5A DNA MER1_type -6 183 2 761 292 36 20 chr3 30191472 30191722 -187845436 - MIR SINE MIR -6 256 3 353 268 41 0 chr3 30192150 30192247 -187844911 + MER5A DNA MER1_type 4 104 -85 3611 118 65 2 chr3 30192346 30192912 -187844246 + LTR43 LTR ERV1 1 602 0 331 244 64 0 chr3 30192928 30193006 -187844152 + MIR SINE MIR 66 148 -60 875 186 6 38 chr3 30193027 30193210 -187843948 - MER5B DNA MER1_type -1 177 1 912 171 10 93 chr3 30193224 30193292 -187843866 + MER5A DNA MER1_type 7 79 -110 1712 170 28 3 chr3 30193292 30193575 -187843583 + AluJo SINE Alu 1 290 -22 912 171 10 93 chr3 30193575 30193699 -187843459 + MER5A DNA MER1_type 79 183 -6 2288 90 3 3 chr3 30194831 30195131 -187842027 + AluSx SINE Alu 1 300 -12 7623 141 4 12 chr3 30196102 30197490 -187839668 + L1PA7 LINE L1 938 2314 -3832 261 0 0 0 chr3 30197636 30197665 -187839493 + (A)n Simple_repeat Simple_repeat 1 29 0 20847 98 46 0 chr3 30197665 30201473 -187835685 + L1PA7 LINE L1 2310 6170 0 303 265 210 19 chr3 30201733 30201895 -187835263 - MIR SINE MIR -19 243 51 * 419 304 143 51 chr3 30201887 30202160 -187834998 + L2 LINE L2 2999 3296 -17 182 150 25 0 chr3 30203093 30203133 -187834025 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 375 185 74 19 chr3 30203676 30203784 -187833374 - L2 LINE L2 -8 3305 3192 241 281 74 25 chr3 30204033 30204236 -187832922 - L1MC/D LINE L1 -2000 5808 5596 1877 164 25 25 chr3 30204490 30204857 -187832301 - L1MC1 LINE L1 0 6333 5967 669 146 8 0 chr3 30205012 30205135 -187832023 - L1P LINE L1 -940 5206 5083 3971 197 30 15 chr3 30205259 30206730 -187830428 - L1MB2 LINE L1 -3 6404 4910 1648 192 10 27 chr3 30206842 30207243 -187829915 - L1MB2 LINE L1 -5363 1021 628 11124 38 0 2 chr3 30207243 30209375 -187827783 - L1PA5 LINE L1 0 6154 4027 870 73 0 0 chr3 30209375 30209498 -187827660 + L1PA5 LINE L1 3898 4020 -2126 180 0 0 0 chr3 30211972 30211992 -187825166 + (CACCC)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr3 30213503 30213524 -187823634 + AT_rich Low_complexity Low_complexity 1 21 0 250 301 27 0 chr3 30213919 30213992 -187823166 - MIR SINE MIR -121 141 67 234 0 0 0 chr3 30214504 30214530 -187822628 + (TTG)n Simple_repeat Simple_repeat 3 28 0 1662 164 57 11 chr3 30214554 30214907 -187822251 - L1MA7 LINE L1 -261 6030 5662 741 291 51 33 chr3 30215274 30215607 -187821551 + L2 LINE L2 2975 3313 0 361 369 108 21 chr3 30215888 30216175 -187820983 + L2 LINE L2 2563 2874 -440 250 197 0 145 chr3 30216507 30216583 -187820575 - L2 LINE L2 0 3313 3249 1890 302 67 30 chr3 30216596 30217423 -187819735 - L2 LINE L2 -365 2949 2093 2022 124 0 40 chr3 30217858 30218180 -187818978 - AluSx SINE Alu -3 309 1 426 256 60 17 chr3 30218306 30218423 -187818735 - L2 LINE L2 -1 3312 3191 399 310 32 26 chr3 30218515 30218670 -187818488 + L2 LINE L2 3158 3313 0 28 0 0 0 chr3 30221165 30221193 -187815965 + AT_rich Low_complexity Low_complexity 1 28 0 1894 227 13 15 chr3 30221221 30221680 -187815478 + MLT1F LTR MaLR 85 542 0 300 318 0 0 chr3 30221959 30222044 -187815114 - Charlie8 DNA MER1_type -2171 246 162 2447 101 0 0 chr3 30222168 30222475 -187814683 - AluSc SINE Alu -2 307 1 310 275 46 30 chr3 30222633 30222764 -187814394 + L2 LINE L2 2926 3058 -214 519 314 58 25 chr3 30222937 30223179 -187813979 + LTR16A LTR ERVL 18 267 -183 306 150 75 0 chr3 30223215 30223295 -187813863 + LTR16A LTR ERVL 339 424 -26 415 350 93 53 chr3 30224167 30224598 -187812560 - L2 LINE L2 0 3272 2825 189 0 0 0 chr3 30225516 30225537 -187811621 + (GA)n Simple_repeat Simple_repeat 1 21 0 261 57 0 0 chr3 30226021 30226056 -187811102 + (GA)n Simple_repeat Simple_repeat 2 36 0 218 351 135 27 chr3 30227740 30227925 -187809233 + L2 LINE L2 3068 3272 0 2858 180 31 54 chr3 30228655 30229271 -187807887 + L1M4c LINE L1 20 621 -5763 198 0 0 0 chr3 30229274 30229296 -187807862 + (CAAAAA)n Simple_repeat Simple_repeat 4 25 0 425 275 8 36 chr3 30229534 30229713 -187807445 - MIR SINE MIR -63 145 21 1671 184 29 29 chr3 30229980 30230354 -187806804 + MLT1A2 LTR MaLR 1 374 0 328 309 32 65 chr3 30230596 30230824 -187806334 + MIR SINE MIR 31 245 -17 593 280 74 34 chr3 30230897 30231317 -187805841 - LTR33A LTR ERVL -25 498 2 241 353 12 0 chr3 30231477 30231562 -187805596 + MIR SINE MIR 39 124 -138 324 284 114 52 chr3 30232701 30232774 -187804384 - MIR SINE MIR -19 243 176 601 271 6 22 chr3 30232774 30232955 -187804203 + MER5B DNA MER1_type 1 178 0 324 284 114 52 chr3 30232955 30233092 -187804066 - MIR SINE MIR -86 176 20 461 274 159 25 chr3 30233327 30233484 -187803674 - MER5A DNA MER1_type -3 186 9 407 313 18 0 chr3 30233618 30233730 -187803428 + MER81 DNA DNA 1 114 0 508 313 38 33 chr3 30233741 30233952 -187803206 + MIR SINE MIR 48 259 -3 204 226 0 19 chr3 30234473 30234526 -187802632 + L2 LINE L2 3214 3265 -7 204 270 131 73 chr3 30235173 30235310 -187801848 + MIR SINE MIR 84 228 -34 * 483 326 116 5 chr3 30235271 30235495 -187801663 - MIR SINE MIR 0 262 14 240 35 0 0 chr3 30236273 30236302 -187800856 + (TG)n Simple_repeat Simple_repeat 2 30 0 311 243 199 58 chr3 30236387 30236557 -187800601 - L1MC/D LINE L1 -1982 5826 5615 2142 95 0 0 chr3 30236557 30236830 -187800328 + AluSx SINE Alu 29 301 -11 311 243 199 58 chr3 30236830 30236885 -187800273 - L1MC/D LINE L1 -2193 5615 5569 25 0 0 0 chr3 30237392 30237417 -187799741 + AT_rich Low_complexity Low_complexity 1 25 0 258 289 0 74 chr3 30237546 30237667 -187799491 - MIR SINE MIR -49 213 102 227 307 18 61 chr3 30238315 30238429 -187798729 - MIR SINE MIR -62 146 38 285 266 156 9 chr3 30238495 30238604 -187798554 - MIR SINE MIR -79 183 59 205 304 87 0 chr3 30238673 30238742 -187798416 + L3 LINE CR1 1501 1575 -2 280 324 0 0 chr3 30239509 30239580 -187797578 + MER5A DNA MER1_type 81 151 -38 336 332 62 26 chr3 30239604 30240364 -187796794 + L1M4 LINE L1 4561 5347 -799 * 1863 237 21 2 chr3 30240361 30240833 -187796325 + L1M4 LINE L1 4627 5107 -1039 2525 87 5 14 chr3 30240952 30241321 -187795837 + L1PA11 LINE L1 5809 6174 0 230 334 108 39 chr3 30241482 30241787 -187795371 - L2 LINE L2 -737 2577 2252 499 258 111 42 chr3 30241788 30241978 -187795180 + MER63A DNA MER1_type 2 204 -6 201 162 0 0 chr3 30242262 30242299 -187794859 + A-rich Low_complexity Low_complexity 4 40 0 27 29 0 0 chr3 30242739 30242773 -187794385 + AT_rich Low_complexity Low_complexity 1 34 0 666 290 53 32 chr3 30242926 30243305 -187793853 - L1ME4a LINE L1 -249 5872 5486 28 0 0 0 chr3 30244160 30244188 -187792970 + AT_rich Low_complexity Low_complexity 1 28 0 352 309 14 22 chr3 30244505 30244644 -187792514 + MLT1H LTR MaLR 24 161 -388 378 189 50 151 chr3 30244796 30244955 -187792203 + MLT1H LTR MaLR 407 549 0 41 0 0 0 chr3 30245549 30245590 -187791568 + AT_rich Low_complexity Low_complexity 1 41 0 335 321 0 0 chr3 30247018 30247124 -187790034 - MIR SINE MIR 0 262 157 273 341 37 12 chr3 30249210 30249340 -187787818 - MIR SINE MIR -27 181 47 196 264 48 104 chr3 30249447 30249572 -187787586 + MIR SINE MIR 72 189 -73 21 0 0 0 chr3 30250612 30250633 -187786525 + AT_rich Low_complexity Low_complexity 1 21 0 415 194 31 10 chr3 30251408 30251506 -187785652 - MER96B DNA MER1_type? -1 416 317 26 64 0 0 chr3 30251506 30251553 -187785605 + AT_rich Low_complexity Low_complexity 1 47 0 1373 175 35 32 chr3 30251574 30251888 -187785270 + MER96B DNA MER1_type? 93 407 -10 1593 181 30 79 chr3 30252092 30252523 -187784635 - L1MA9 LINE L1 -1 6311 5902 310 254 174 22 chr3 30252764 30252902 -187784256 - MIR SINE MIR -56 206 48 21 0 0 0 chr3 30253662 30253683 -187783475 + AT_rich Low_complexity Low_complexity 1 21 0 284 306 99 0 chr3 30253700 30253811 -187783347 + HAL1 LINE L1 19 140 -2367 497 280 73 71 chr3 30254126 30254494 -187782664 + HAL1 LINE L1 532 900 -1607 1137 35 0 0 chr3 30254564 30254705 -187782453 + AluY SINE Alu 171 311 0 325 301 46 31 chr3 30254735 30254931 -187782227 + HAL1 LINE L1 971 1169 -1338 1962 113 4 4 chr3 30254933 30255208 -187781950 + AluSx SINE Alu 4 278 -34 883 275 121 67 chr3 30255428 30256232 -187780926 + HAL1 LINE L1 1654 2500 -7 207 232 0 0 chr3 30256234 30256290 -187780868 + (CA)n Simple_repeat Simple_repeat 1 56 0 330 228 79 26 chr3 30257138 30257252 -187779906 + L1ME4a LINE L1 6000 6119 -2 2224 101 0 0 chr3 30258469 30258766 -187778392 - AluSc SINE Alu -12 297 1 968 220 5 5 chr3 30259093 30259293 -187777865 + MER58A DNA MER1_type 14 213 -11 387 274 112 46 chr3 30310714 30311383 -187725775 + L1M4 LINE L1 2636 3348 -2798 256 258 70 39 chr3 30312128 30312256 -187724902 + L1M1 LINE L1 5311 5442 -860 1760 170 7 16 chr3 30312280 30312586 -187724572 + AluJb SINE Alu 1 303 -9 2196 108 0 3 chr3 30312675 30312972 -187724186 - AluY SINE Alu -15 296 1 674 294 33 22 chr3 30313054 30313476 -187723682 + L1ME3A LINE L1 5518 5945 -225 207 100 0 0 chr3 30314037 30314067 -187723091 + (CA)n Simple_repeat Simple_repeat 2 31 0 235 259 0 0 chr3 30315069 30315123 -187722035 + (TA)n Simple_repeat Simple_repeat 2 55 0 406 283 156 30 chr3 30316004 30316273 -187720885 - MLT1L LTR MaLR -4 611 309 1657 138 32 44 chr3 30316371 30316712 -187720446 + MER1B DNA MER1_type 1 337 0 24 0 0 0 chr3 30317416 30317440 -187719718 + AT_rich Low_complexity Low_complexity 1 24 0 342 336 18 9 chr3 30317504 30317614 -187719544 + MIR SINE MIR 17 127 -135 280 0 182 0 chr3 30317618 30317662 -187719496 - MADE1 DNA Mariner -1 79 28 284 308 19 28 chr3 30317663 30317770 -187719388 + MIR SINE MIR 141 246 -16 209 211 53 0 chr3 30317921 30317978 -187719180 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 338 264 23 11 chr3 30319161 30319248 -187717910 - L2 LINE L2 -2 3311 3224 2070 221 48 13 chr3 30319254 30319729 -187717429 - MLT1D LTR MaLR -2 503 12 762 280 143 28 chr3 30319742 30320314 -187716844 - L2 LINE L2 -107 3206 2579 615 65 0 0 chr3 30320353 30320430 -187716728 + MADE1 DNA Mariner 4 80 0 1925 144 10 0 chr3 30320443 30320735 -187716423 + AluSx SINE Alu 1 295 -17 23 54 0 0 chr3 30321744 30321781 -187715377 + AT_rich Low_complexity Low_complexity 1 37 0 236 339 105 29 chr3 30323245 30323416 -187713742 + L3 LINE CR1 1393 1576 -1 411 250 31 62 chr3 30323672 30323800 -187713358 - L2 LINE L2 0 3313 3190 685 257 180 80 chr3 30323822 30324273 -187712885 + MLT1D LTR MaLR 3 498 -7 269 345 37 12 chr3 30324275 30324436 -187712722 + MIR SINE MIR 13 145 -63 1601 150 129 24 chr3 30325289 30325622 -187711536 + THE1C LTR MaLR 8 375 0 1109 214 68 21 chr3 30327140 30327421 -187709737 - MER58B DNA MER1_type 0 341 48 243 265 254 6 chr3 30327852 30328033 -187709125 - MLT1H LTR MaLR -19 530 305 450 236 147 61 chr3 30328051 30328192 -187708966 - MLT1H LTR MaLR -326 204 91 2252 122 0 0 chr3 30328192 30328487 -187708671 + AluSc SINE Alu 1 295 -14 450 236 147 61 chr3 30328487 30328585 -187708573 - MLT1H LTR MaLR -439 91 3 469 271 110 7 chr3 30329318 30329473 -187707685 - MER104 DNA Tc2 0 180 10 232 315 37 28 chr3 30329529 30329637 -187707521 - MIR SINE MIR -50 212 104 22 0 0 0 chr3 30329637 30329659 -187707499 + AT_rich Low_complexity Low_complexity 1 22 0 586 338 32 32 chr3 30330142 30330512 -187706646 - MLT1I LTR MaLR -2 407 38 562 306 40 30 chr3 30331725 30332026 -187705132 - L1MC4a LINE L1 -1892 5916 5613 294 217 0 0 chr3 30332502 30332571 -187704587 + (TA)n Simple_repeat Simple_repeat 2 70 0 30 109 0 0 chr3 30332579 30332707 -187704451 + AT_rich Low_complexity Low_complexity 1 128 0 255 274 96 14 chr3 30332788 30332861 -187704297 - MLT1I LTR MaLR -105 304 226 220 238 8 127 chr3 30334705 30334831 -187702327 - MIR SINE MIR -44 218 108 203 161 0 0 chr3 30335620 30335651 -187701507 + A-rich Low_complexity Low_complexity 4 34 0 207 161 0 0 chr3 30336006 30336037 -187701121 + polypyrimidine Low_complexity Low_complexity 6 36 0 184 347 14 28 chr3 30337560 30337632 -187699526 - MIR SINE MIR -115 93 23 239 91 0 0 chr3 30338327 30338360 -187698798 - MER3 DNA MER1_type -161 48 16 2580 178 28 46 chr3 30338425 30338992 -187698166 - L1MB1 LINE L1 -1 6167 5611 1716 182 51 2 chr3 30338987 30339416 -187697742 + L1 LINE L1 3119 3568 -2578 * 23 33 0 0 chr3 30340062 30340092 -187697066 + AT_rich Low_complexity Low_complexity 1 30 0 213 39 0 0 chr3 30340202 30340228 -187696930 + (T)n Simple_repeat Simple_repeat 1 26 0 1350 179 13 4 chr3 30340409 30340644 -187696514 - AluJo SINE Alu -75 237 1 322 208 30 10 chr3 30340644 30340745 -187696413 - Charlie2 DNA MER1_type -88 2774 2672 1164 327 50 40 chr3 30340802 30341866 -187695292 + L1MEc LINE L1 55 1129 -5267 1135 230 53 13 chr3 30341890 30342194 -187694964 + L1ME3 LINE L1 5504 5819 -347 192 77 0 0 chr3 30342696 30342722 -187694436 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 308 326 68 15 chr3 30344262 30344394 -187692764 + MIR SINE MIR 53 191 -71 767 232 68 12 chr3 30344444 30344694 -187692464 + L1ME3 LINE L1 5896 6159 -3 602 232 129 0 chr3 30345038 30345193 -187691965 + MER45A DNA AcHobo 3 177 -1 283 290 0 0 chr3 30345323 30345385 -187691773 + L2 LINE L2 3246 3307 -6 1287 283 139 29 chr3 30346788 30347349 -187689809 + L2 LINE L2 2039 2661 -653 236 303 32 32 chr3 30347637 30347792 -187689366 + L2 LINE L2 3011 3165 -148 339 82 0 0 chr3 30347855 30347904 -187689254 + MLT2A2 LTR ERVL 1 49 -404 360 194 28 0 chr3 30347905 30347977 -187689181 + L2 LINE L2 3209 3282 -31 1175 148 16 0 chr3 30348585 30348774 -187688384 + AluSc SINE Alu 104 295 -14 1897 179 16 25 chr3 30348969 30349337 -187687821 + MLT1A1 LTR MaLR 1 365 0 607 292 67 5 chr3 30350783 30350992 -187686166 - MER58A DNA MER1_type 0 224 3 452 253 213 13 chr3 30354481 30354631 -187682527 - MER5A DNA MER1_type -6 183 4 281 314 137 11 chr3 30355017 30355192 -187681966 + MIR SINE MIR 54 250 -12 288 0 0 0 chr3 30355646 30355678 -187681480 + (T)n Simple_repeat Simple_repeat 1 32 0 23 54 0 0 chr3 30356592 30356629 -187680529 + AT_rich Low_complexity Low_complexity 1 37 0 2102 108 0 10 chr3 30356771 30357067 -187680091 + AluSq SINE Alu 1 293 -20 786 145 99 29 chr3 30357113 30357285 -187679873 - MER5A DNA MER1_type -5 184 1 592 189 88 40 chr3 30357500 30357564 -187679594 + MER5B DNA MER1_type 21 81 -97 1082 217 94 60 chr3 30357564 30357947 -187679211 - MSTD LTR MaLR 0 396 1 592 189 88 40 chr3 30357947 30358030 -187679128 + MER5B DNA MER1_type 81 175 -3 744 210 155 0 chr3 30358396 30358577 -187678581 + MER3 DNA MER1_type 1 209 0 736 244 56 5 chr3 30358729 30358942 -187678216 - MER58A DNA MER1_type 0 224 1 1086 317 101 21 chr3 30361436 30362160 -187674998 + L2 LINE L2 2534 3313 0 291 283 29 43 chr3 30362169 30362307 -187674851 + Charlie7 DNA MER1_type 2129 2264 -348 2207 77 31 3 chr3 30362324 30362610 -187674548 + AluSq SINE Alu 1 294 -19 31 88 0 0 chr3 30362619 30362699 -187674459 + AT_rich Low_complexity Low_complexity 1 80 0 227 305 114 8 chr3 30363862 30363993 -187673165 - MIR SINE MIR -60 202 58 4717 177 6 22 chr3 30364073 30365121 -187672037 - L1MB1 LINE L1 0 6168 5136 2681 188 19 83 chr3 30365133 30365884 -187671274 - L1MB1 LINE L1 -1322 4824 4122 404 240 16 33 chr3 30366422 30366543 -187670615 + MER5C DNA MER1_type 2 120 -204 290 233 0 58 chr3 30366575 30366661 -187670497 + MER5C DNA MER1_type 244 324 0 183 333 35 23 chr3 30366730 30366754 -187670404 - MIR SINE MIR -111 151 129 216 97 0 0 chr3 30366754 30366785 -187670373 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 183 333 35 23 chr3 30366785 30366847 -187670311 - MIR SINE MIR -133 129 64 25 0 0 0 chr3 30367056 30367081 -187670077 + AT_rich Low_complexity Low_complexity 1 25 0 308 256 90 0 chr3 30367152 30367230 -187669928 - L2 LINE L2 -3 3269 3185 267 195 49 24 chr3 30368614 30368696 -187668462 + HsTC2 DNA Tc2 3 86 -1812 231 260 0 0 chr3 30368681 30368731 -187668427 + HsTC2 DNA Tc2 1849 1898 0 * 661 289 37 11 chr3 30368731 30368921 -187668237 - MIR SINE MIR -67 195 1 294 265 194 18 chr3 30369155 30369325 -187667833 - L1ME LINE L1 -303 5818 5619 335 263 197 26 chr3 30370775 30370830 -187666328 + MER5A DNA MER1_type 12 56 -133 14576 136 23 2 chr3 30370830 30373199 -187663959 + Tigger1 DNA MER2_type 1 2418 0 335 263 197 26 chr3 30373199 30373295 -187663863 + MER5A DNA MER1_type 56 189 0 31 0 0 0 chr3 30373881 30373912 -187663246 + AT_rich Low_complexity Low_complexity 1 31 0 189 209 15 75 chr3 30373987 30374054 -187663104 + MIR SINE MIR 83 145 -63 2413 230 80 85 chr3 30375071 30375469 -187661689 - MER63C DNA MER1_type -131 929 531 655 296 9 22 chr3 30375469 30375692 -187661466 + MER58A DNA MER1_type 4 223 -1 2413 230 80 85 chr3 30375692 30376296 -187660862 - MER63C DNA MER1_type -529 531 63 1297 198 41 16 chr3 30376300 30376328 -187660830 - MLT2D LTR ERVL -8 389 363 384 40 0 0 chr3 30376328 30376378 -187660780 + (TG)n Simple_repeat Simple_repeat 2 51 0 1297 198 41 16 chr3 30376378 30376707 -187660451 - MLT2D LTR ERVL -34 363 1 21 36 0 0 chr3 30378106 30378134 -187659024 + AT_rich Low_complexity Low_complexity 1 28 0 207 341 181 15 chr3 30379096 30379301 -187657857 - L2 LINE L2 -1367 1947 1709 1548 184 109 48 chr3 30380313 30380753 -187656405 - MLT1C LTR MaLR 0 467 1 2383 84 0 0 chr3 30380937 30381245 -187655913 + AluSx SINE Alu 1 308 -4 276 331 112 58 chr3 30381577 30381819 -187655339 + MIR SINE MIR 8 262 0 21 0 0 0 chr3 30381922 30381943 -187655215 + AT_rich Low_complexity Low_complexity 1 21 0 360 327 92 32 chr3 30382014 30382231 -187654927 + L2 LINE L2 3084 3313 0 25 0 0 0 chr3 30383255 30383280 -187653878 + AT_rich Low_complexity Low_complexity 1 25 0 338 293 102 32 chr3 30383471 30383628 -187653530 - MER112 DNA MER1_type -89 171 4 286 344 56 8 chr3 30383639 30383764 -187653394 + MIR SINE MIR 20 150 -112 22 35 0 0 chr3 30384944 30384973 -187652185 + AT_rich Low_complexity Low_complexity 1 29 0 2014 122 3 44 chr3 30385920 30386241 -187650917 - AluSx SINE Alu -4 308 1 244 368 13 0 chr3 30387006 30387082 -187650076 + LTR67 LTR ERVL 114 190 -367 297 320 30 0 chr3 30387818 30387918 -187649240 + ERVL LTR ERVL 4962 5064 -700 554 257 63 27 chr3 30389378 30389600 -187647558 - MLT1L LTR MaLR -221 394 165 957 231 0 44 chr3 30389640 30389869 -187647289 + MER20 DNA MER1_type 1 219 0 879 233 5 5 chr3 30389986 30390175 -187646983 - MER5A DNA MER1_type 0 189 1 187 286 43 14 chr3 30390206 30390276 -187646882 + MIR SINE MIR 71 142 -120 380 265 85 7 chr3 30390646 30390819 -187646339 + L1ME LINE L1 5317 5499 -622 344 264 47 0 chr3 30391474 30391580 -187645578 - MIR SINE MIR -65 197 87 271 291 284 0 chr3 30391660 30391801 -187645357 - MIR SINE MIR -2 260 80 420 70 0 0 chr3 30391809 30391866 -187645292 - Alu SINE Alu -243 68 12 404 241 112 0 chr3 30392139 30392255 -187644903 - MIR SINE MIR -34 228 100 269 271 18 118 chr3 30392927 30393097 -187644061 - MIR3 SINE MIR -18 190 38 924 32 0 48 chr3 30393336 30393460 -187643698 + L1PA3 LINE L1 6038 6155 0 522 241 38 8 chr3 30394141 30394274 -187642884 + L1ME1 LINE L1 6024 6160 -6 2238 109 0 3 chr3 30394623 30394927 -187642231 + AluSc SINE Alu 1 303 -6 304 313 10 10 chr3 30395133 30395229 -187641929 + MIR3 SINE MIR 92 187 -21 207 0 0 0 chr3 30395806 30395829 -187641329 + (A)n Simple_repeat Simple_repeat 1 23 0 256 280 154 16 chr3 30396191 30396290 -187640868 + LTR37B LTR ERV1 7 91 -377 198 0 0 0 chr3 30396290 30396312 -187640846 + (TA)n Simple_repeat Simple_repeat 2 23 0 256 280 154 16 chr3 30396312 30396394 -187640764 + LTR37B LTR ERV1 91 213 -255 230 241 17 0 chr3 30398107 30398165 -187638993 - L1M4 LINE L1 -433 5751 5693 501 32 0 0 chr3 30398719 30398782 -187638376 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 265 334 119 59 chr3 30398995 30399315 -187637843 - L2 LINE L2 0 3272 2934 207 0 0 0 chr3 30400685 30400708 -187636450 + (CA)n Simple_repeat Simple_repeat 2 24 0 398 316 47 7 chr3 30402011 30402161 -187634997 + MIR SINE MIR 35 189 -73 1002 266 136 16 chr3 30402598 30402974 -187634184 + MER110 LTR ERV1 71 491 0 223 274 20 0 chr3 30404046 30404097 -187633061 - L2 LINE L2 -4 3268 3217 209 213 0 0 chr3 30404971 30405018 -187632140 + T-rich Low_complexity Low_complexity 1 47 0 280 339 69 21 chr3 30407418 30407607 -187629551 - L1M4 LINE L1 -476 5645 5448 2004 131 0 0 chr3 30407750 30408040 -187629118 + AluSx SINE Alu 1 290 -22 246 62 0 0 chr3 30409776 30409808 -187627350 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 218 338 95 34 chr3 30409808 30409947 -187627211 - L2 LINE L2 -10 3262 3112 589 199 44 15 chr3 30409964 30410100 -187627058 + L1ME2 LINE L1 6024 6163 -1 334 225 108 33 chr3 30410168 30410288 -187626870 - MER103 DNA DNA -37 129 1 561 215 114 0 chr3 30410620 30410807 -187626351 + MER58C DNA MER1_type 1 215 0 247 274 89 32 chr3 30411079 30411203 -187625955 - L2 LINE L2 -1036 2278 2148 2382 49 3 30 chr3 30411539 30411844 -187625314 + AluY SINE Alu 6 302 -9 1584 204 13 30 chr3 30412281 30412678 -187624480 + L1 LINE L1 3331 3720 -2426 4877 173 51 10 chr3 30412678 30413640 -187623518 + L1PA16 LINE L1 4430 5488 -678 1817 37 0 0 chr3 30413640 30413858 -187623300 - L1PA5 LINE L1 -6 6148 5931 4877 173 51 10 chr3 30413858 30414563 -187622595 + L1PA16 LINE L1 5488 6163 -3 2412 244 84 22 chr3 30414731 30415543 -187621615 + L1MD1 LINE L1 3 999 -5541 2389 231 53 29 chr3 30415540 30416733 -187620425 + L1MD1 LINE L1 4815 6045 -708 * 3672 57 11 2 chr3 30416740 30417217 -187619941 - L1PA7 LINE L1 -1 6153 5673 2322 76 0 0 chr3 30417221 30417538 -187619620 + L1P LINE L1 4962 5278 -868 2132 189 40 17 chr3 30417538 30417941 -187619217 + MSTB1 LTR MaLR 19 430 -2 773 267 37 0 chr3 30417950 30418141 -187619017 + L1MD1 LINE L1 6023 6220 -416 852 286 97 0 chr3 30418172 30418542 -187618616 + L1MDa LINE L1 2611 3016 -3524 1013 252 52 0 chr3 30418542 30418792 -187618366 + AluJo SINE Alu 1 263 -49 827 140 19 0 chr3 30418805 30419050 -187618108 + GA-rich Low_complexity Low_complexity 1 249 0 373 268 10 0 chr3 30419055 30419152 -187618006 + L1MDa LINE L1 3007 3104 -3436 6116 263 38 6 chr3 30419159 30421100 -187616058 + L1MDa LINE L1 3593 5595 -945 2305 226 86 12 chr3 30421100 30422469 -187614689 + L1MB8 LINE L1 4650 6177 -1 2389 67 0 19 chr3 30422480 30422795 -187614363 + AluY SINE Alu 1 309 -2 318 346 39 6 chr3 30424428 30424584 -187612574 + MIR SINE MIR 102 262 0 477 293 144 0 chr3 30425903 30426091 -187611067 - MIR SINE MIR -5 257 43 376 219 45 71 chr3 30427134 30427289 -187609869 + L2 LINE L2 3115 3265 -48 24 77 0 0 chr3 30428181 30428233 -187608925 + AT_rich Low_complexity Low_complexity 1 52 0 302 250 42 90 chr3 30429805 30429949 -187607209 - MIR SINE MIR -1 261 125 347 267 43 26 chr3 30430929 30431045 -187606113 + MIR SINE MIR 94 211 -51 387 263 71 75 chr3 30431101 30431367 -187605791 - L2 LINE L2 -3 3310 3046 258 317 61 0 chr3 30431742 30431824 -187605334 + MIR SINE MIR 5 91 -171 2564 59 0 0 chr3 30432091 30432397 -187604761 - AluY SINE Alu -5 306 1 22 35 0 0 chr3 30432472 30432501 -187604657 + AT_rich Low_complexity Low_complexity 1 29 0 237 246 0 0 chr3 30433874 30433939 -187603219 + (TATATG)n Simple_repeat Simple_repeat 5 69 0 22 56 0 0 chr3 30434638 30434674 -187602484 + AT_rich Low_complexity Low_complexity 1 36 0 27 62 0 0 chr3 30435343 30435391 -187601767 + AT_rich Low_complexity Low_complexity 1 48 0 200 188 0 0 chr3 30435697 30435729 -187601429 + (TG)n Simple_repeat Simple_repeat 1 32 0 231 156 0 0 chr3 30435729 30435774 -187601384 - L1MC4 LINE L1 -1340 6702 6658 311 145 14 0 chr3 30435777 30435846 -187601312 + GA-rich Low_complexity Low_complexity 1 70 0 258 298 196 6 chr3 30436024 30436192 -187600966 + MIR SINE MIR 53 252 -10 395 297 36 72 chr3 30437097 30437150 -187600008 - L1ME4a LINE L1 -224 5897 5844 2044 141 0 6 chr3 30437150 30437462 -187599696 + AluSx SINE Alu 1 310 -2 395 297 36 72 chr3 30437462 30437714 -187599444 - L1ME4a LINE L1 -277 5844 5603 2002 110 4 4 chr3 30437947 30438250 -187598908 - AluSg SINE Alu 0 303 1 21 36 0 0 chr3 30438616 30438644 -187598514 + AT_rich Low_complexity Low_complexity 1 28 0 315 205 77 0 chr3 30439418 30439496 -187597662 - LTR68 LTR ERV1 -636 104 21 182 36 0 36 chr3 30440130 30440158 -187597000 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 8940 86 11 5 chr3 30440158 30442198 -187594960 - L1PA7 LINE L1 0 6154 4106 498 294 105 0 chr3 30443094 30443237 -187593921 + MIR SINE MIR 32 189 -73 218 284 15 0 chr3 30444773 30444840 -187592318 + MIR SINE MIR 99 166 -96 1989 231 53 27 chr3 30445078 30445603 -187591555 - MER119 DNA MER1_type -2 581 43 1380 222 3 7 chr3 30446504 30446858 -187590300 + AluJb SINE Alu 1 353 0 23 0 0 0 chr3 30446963 30446986 -187590172 + AT_rich Low_complexity Low_complexity 1 23 0 2417 101 5 41 chr3 30447509 30447877 -187589281 + THE1A LTR MaLR 1 355 0 2046 89 7 0 chr3 30447877 30448159 -187588999 + THE1A-int LTR MaLR 1 284 -1296 329 367 105 4 chr3 30448892 30449121 -187588037 + MIR SINE MIR 11 262 0 225 328 0 0 chr3 30450416 30450480 -187586678 + L2 LINE L2 3210 3273 -40 5320 153 28 56 chr3 30450480 30451819 -187585339 + L1MA5 LINE L1 4978 6300 0 22 0 0 0 chr3 30451969 30451991 -187585167 + AT_rich Low_complexity Low_complexity 1 22 0 676 388 57 25 chr3 30452415 30453122 -187584036 - L2 LINE L2 -337 2977 2249 229 308 0 13 chr3 30453428 30453506 -187583652 + MER103 DNA DNA 23 99 -67 273 57 0 0 chr3 30455013 30455048 -187582110 + (A)n Simple_repeat Simple_repeat 1 35 0 2385 88 0 7 chr3 30455066 30455374 -187581784 - AluSx SINE Alu -6 306 1 239 277 92 8 chr3 30455735 30455854 -187581304 + MIR SINE MIR 68 196 -66 345 275 11 11 chr3 30455895 30455986 -187581172 - L2 LINE L2 -8 3264 3174 1452 219 61 58 chr3 30456047 30456586 -187580572 + L1MC4 LINE L1 7502 8042 0 1838 138 0 68 chr3 30457167 30457492 -187579666 - AluSx SINE Alu -9 303 1 20238 169 41 17 chr3 30458385 30459105 -187578053 + L1M1 LINE L1 13 715 -6850 207 0 0 0 chr3 30459105 30459128 -187578030 + (GGAGA)n Simple_repeat Simple_repeat 4 26 0 20238 169 41 17 chr3 30459128 30459815 -187577343 + L1M1 LINE L1 715 1384 -6181 1639 151 127 6 chr3 30459815 30460147 -187577011 + THE1C LTR MaLR 1 372 -3 20238 169 41 17 chr3 30460147 30463749 -187573409 + L1M1 LINE L1 1384 5150 -2415 1877 253 48 42 chr3 30464049 30464524 -187572634 - L1M4 LINE L1 -1355 4791 4307 1677 182 0 14 chr3 30464524 30464810 -187572348 - AluJo SINE Alu -24 288 7 1877 253 48 42 chr3 30464810 30465232 -187571926 - L1M4 LINE L1 -1839 4307 3889 2368 29 0 7 chr3 30465233 30465508 -187571650 - AluY SINE Alu 0 311 39 16954 139 24 13 chr3 30465508 30465907 -187571251 + L1P LINE L1 1832 2225 -3921 1976 130 32 0 chr3 30465907 30466192 -187570966 + AluSx SINE Alu 1 294 -18 16954 139 24 13 chr3 30466192 30466343 -187570815 + L1P LINE L1 2225 2373 -3773 1662 164 57 33 chr3 30466343 30466709 -187570449 + THE1C LTR MaLR 1 375 0 16954 139 24 13 chr3 30466709 30469054 -187568104 + L1P LINE L1 2373 4761 -1385 681 211 0 40 chr3 30469318 30469470 -187567688 - MER45A DNA AcHobo 0 178 33 1589 209 27 9 chr3 30469473 30469808 -187567350 - MLT1A1 LTR MaLR -2 363 23 219 381 9 0 chr3 30470082 30470187 -187566971 - MER5B DNA MER1_type -5 173 68 10368 73 17 3 chr3 30470829 30473004 -187564154 - L1PA6 LINE L1 -3 6151 3942 1570 148 0 0 chr3 30473165 30473401 -187563757 - MLT1A1 LTR MaLR 0 365 130 620 180 55 65 chr3 30473695 30473928 -187563230 + LTR45B LTR ERV1 324 525 0 714 119 0 0 chr3 30473934 30474035 -187563123 - MLT1A1 LTR MaLR -264 101 1 243 125 0 0 chr3 30474125 30474165 -187562993 + (GA)n Simple_repeat Simple_repeat 2 41 0 293 253 210 31 chr3 30474165 30474327 -187562831 + MLT1K LTR MaLR 395 585 -3 216 97 0 0 chr3 30475961 30475992 -187561166 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 375 302 26 42 chr3 30476264 30476456 -187560702 + L2 LINE L2 2665 2853 -461 662 68 0 0 chr3 30476474 30476562 -187560596 - L1PA16 LINE L1 -10 6156 6069 914 235 38 118 chr3 30476675 30477247 -187559911 + L2 LINE L2 2778 3312 -1 205 347 61 0 chr3 30477256 30477354 -187559804 - L2 LINE L2 -256 3057 2954 797 267 32 14 chr3 30477384 30477397 -187559761 - MIR SINE MIR -36 226 215 2487 80 0 0 chr3 30477397 30477709 -187559449 - AluSq SINE Alu -1 312 1 797 267 32 14 chr3 30477709 30477916 -187559242 - MIR SINE MIR -47 215 2 489 327 88 33 chr3 30477922 30478228 -187558930 - L2 LINE L2 -359 2955 2633 21 57 0 0 chr3 30478263 30478298 -187558860 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr3 30478361 30478389 -187558769 + AT_rich Low_complexity Low_complexity 1 28 0 650 242 13 0 chr3 30478529 30478682 -187558476 - L1MB7 LINE L1 0 6184 6030 2288 107 0 3 chr3 30478693 30478991 -187558167 + AluSg SINE Alu 2 298 -12 479 271 29 0 chr3 30479232 30479372 -187557786 - MIR SINE MIR -2 260 117 21 57 0 0 chr3 30480176 30480211 -187556947 + AT_rich Low_complexity Low_complexity 1 35 0 2127 90 0 4 chr3 30480362 30480669 -187556489 + AluSc SINE Alu 3 308 0 1228 93 0 83 chr3 30480669 30480874 -187556284 + MER4B LTR ERV1 20 207 -403 1953 127 17 0 chr3 30480879 30481171 -187555987 + AluSx SINE Alu 1 297 -15 1908 179 16 25 chr3 30481368 30481736 -187555422 + MLT1A1 LTR MaLR 1 365 0 2329 111 0 6 chr3 30483869 30484184 -187552974 - AluSq SINE Alu 0 313 1 596 284 74 8 chr3 30484207 30484450 -187552708 + MIR SINE MIR 3 259 -3 283 298 304 11 chr3 30486166 30486347 -187550811 + L3 LINE CR1 1331 1564 -13 256 240 263 6 chr3 30487105 30487280 -187549878 + MER112 DNA MER1_type 1 220 -40 1856 130 63 3 chr3 30488332 30488616 -187548542 - AluSx SINE Alu -11 301 1 182 305 28 78 chr3 30488616 30488752 -187548406 - MIR SINE MIR -82 180 52 236 322 80 2 chr3 30488834 30489016 -187548142 - MIR SINE MIR -15 247 15 21 36 0 0 chr3 30489091 30489119 -187548039 + AT_rich Low_complexity Low_complexity 1 28 0 217 360 106 25 chr3 30489596 30489757 -187547401 - MIR3 SINE MIR -2 206 33 338 289 141 8 chr3 30490027 30490155 -187547003 + L2 LINE L2 3125 3269 -3 4703 201 7 5 chr3 30490242 30491318 -187545840 + L1 LINE L1 4013 5090 -1056 781 276 146 18 chr3 30491448 30492052 -187545106 - L2 LINE L2 -51 3262 2579 284 249 55 152 chr3 30492357 30492522 -187544636 - MIR3 SINE MIR -8 200 52 512 241 26 43 chr3 30492645 30492784 -187544374 + MIR SINE MIR 54 190 -61 407 254 55 113 chr3 30492836 30493112 -187544046 + MLT1I LTR MaLR 82 319 -90 2250 99 0 3 chr3 30493112 30493414 -187543744 - AluSg SINE Alu -9 301 1 407 254 55 113 chr3 30493414 30493499 -187543659 + MLT1I LTR MaLR 319 407 -2 224 75 0 25 chr3 30494215 30494255 -187542903 + (TTAA)n Simple_repeat Simple_repeat 2 40 0 233 193 0 35 chr3 30494958 30495015 -187542143 - Charlie1 DNA MER1_type -4 2757 2703 13735 121 111 12 chr3 30495025 30496856 -187540302 + L1PBa LINE L1 4 2222 -4640 2240 151 28 8 chr3 30496856 30497213 -187539945 - THE1B LTR MaLR 0 364 1 13735 121 111 12 chr3 30497213 30497974 -187539184 + L1PBa LINE L1 2222 2907 -3955 634 235 105 6 chr3 30498623 30498785 -187538373 - MER20 DNA MER1_type -4 215 38 842 178 29 7 chr3 30498901 30499092 -187538066 + MLT1D LTR MaLR 1 168 -337 480 223 67 76 chr3 30499136 30499360 -187537798 - L2 LINE L2 -65 3248 3027 465 242 159 19 chr3 30500797 30500884 -187536274 + MER5A DNA MER1_type 10 83 -106 2234 162 44 12 chr3 30500884 30501297 -187535861 - MSTB LTR MaLR 0 426 1 465 242 159 19 chr3 30501297 30501366 -187535792 + MER5A DNA MER1_type 83 188 -1 207 0 0 0 chr3 30502620 30502643 -187534515 + (CA)n Simple_repeat Simple_repeat 2 24 0 236 343 21 0 chr3 30502713 30502853 -187534305 + LTR16A1 LTR ERVL 305 447 -10 276 250 40 10 chr3 30502874 30502974 -187534184 + MER20 DNA MER1_type 100 202 -17 794 310 73 64 chr3 30503080 30503615 -187533543 - L2 LINE L2 -1215 2099 1560 1307 281 19 16 chr3 30503962 30504392 -187532766 + LTR16B LTR ERVL 34 464 0 266 260 32 8 chr3 30505954 30506077 -187531081 + L1MC4a LINE L1 4479 4604 -1542 332 337 81 50 chr3 30506107 30506238 -187530920 + L1MC4a LINE L1 4629 4754 -1392 1859 147 0 7 chr3 30506238 30506523 -187530635 + AluJb SINE Alu 1 283 -29 332 337 81 50 chr3 30506523 30506809 -187530349 + L1MC4a LINE L1 4754 5059 -1087 884 278 120 28 chr3 30507012 30507472 -187529686 - LTR33 LTR ERVL -8 513 12 188 196 0 36 chr3 30507679 30507735 -187529423 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 347 303 75 53 chr3 30507841 30507992 -187529166 + L1MC4a LINE L1 5733 5892 -1916 414 0 0 0 chr3 30507992 30508038 -187529120 + (CA)n Simple_repeat Simple_repeat 2 47 0 347 303 75 53 chr3 30508038 30508114 -187529044 + L1MC4a LINE L1 5892 5965 -1843 260 216 88 81 chr3 30508338 30508486 -187528672 + L1ME LINE L1 4487 4635 -1511 21 0 0 0 chr3 30508709 30508730 -187528428 + AT_rich Low_complexity Low_complexity 1 21 0 1986 135 0 0 chr3 30508795 30509083 -187528075 + AluJb SINE Alu 22 309 -3 883 216 89 48 chr3 30509111 30509485 -187527673 - L1ME3A LINE L1 0 6170 5778 1556 202 40 8 chr3 30509485 30509837 -187527321 + MLT1A1 LTR MaLR 3 365 0 883 216 89 48 chr3 30509837 30509855 -187527303 - L1ME3A LINE L1 -392 5778 5762 675 255 58 0 chr3 30509933 30510121 -187527037 + L1ME LINE L1 5511 5709 -461 9913 39 1 2 chr3 30511269 30513163 -187523995 + L1PA5 LINE L1 4138 6028 -126 451 365 18 9 chr3 30513471 30513693 -187523465 + MIR SINE MIR 12 235 -27 192 256 0 0 chr3 30514796 30514839 -187522319 + MIR SINE MIR 50 92 -170 558 317 13 35 chr3 30514854 30515084 -187522074 - MIR SINE MIR 0 262 38 6652 173 22 5 chr3 30515459 30517439 -187519719 + L1P5 LINE L1 3784 5782 -369 206 137 59 0 chr3 30517447 30517498 -187519660 + (TA)n Simple_repeat Simple_repeat 2 55 0 317 168 15 36 chr3 30517546 30517683 -187519475 + (TA)n Simple_repeat Simple_repeat 1 134 0 1436 216 9 15 chr3 30517885 30518218 -187518940 - MLT1A1 LTR MaLR 0 365 35 276 257 83 14 chr3 30518364 30518508 -187518650 - L1ME4a LINE L1 -118 6003 5850 283 262 56 24 chr3 30518612 30518738 -187518420 - LTR67 LTR ERVL 0 557 428 370 302 63 13 chr3 30519924 30520083 -187517075 - MIR SINE MIR -55 207 41 2185 139 5 1 chr3 30520464 30520999 -187516159 + L1PA13 LINE L1 1942 2488 -4309 2270 70 17 23 chr3 30520999 30521300 -187515858 - AluSx SINE Alu -13 299 1 3734 188 36 57 chr3 30522032 30523021 -187514137 + LTR5 LTR ERVK 1 969 0 2254 72 0 46 chr3 30523238 30523544 -187513614 - AluY SINE Alu -19 292 1 334 269 155 72 chr3 30523598 30523862 -187513296 + L2 LINE L2 3027 3312 -1 232 299 126 0 chr3 30525723 30525810 -187511348 + MIR SINE MIR 84 181 -81 12888 94 22 18 chr3 30526500 30528530 -187508628 - L1P LINE L1 -3565 2581 544 499 216 90 0 chr3 30528651 30528762 -187508396 - MER96 DNA MER1_type? -54 121 1 226 238 0 0 chr3 30529343 30529385 -187507773 - MIR SINE MIR -98 164 123 658 219 53 11 chr3 30529446 30529633 -187507525 + LTR41 LTR ERVL 1 195 -578 344 145 40 105 chr3 30530176 30530300 -187506858 + LTR41 LTR ERVL 651 766 -7 2410 110 3 16 chr3 30530417 30530791 -187506367 - L1PB1 LINE L1 0 6151 5783 311 283 0 22 chr3 30530796 30530888 -187506270 + L1MC4 LINE L1 6615 6704 -1338 * 334 264 23 0 chr3 30530809 30530896 -187506262 - L1MC4 LINE L1 -1339 6703 6615 216 180 0 60 chr3 30530897 30530997 -187506161 + (TA)n Simple_repeat Simple_repeat 2 95 0 431 251 66 113 chr3 30531149 30531484 -187505674 - MLT1J1 LTR MaLR -127 319 1 1351 184 27 51 chr3 30532428 30532760 -187504398 - MER33 DNA MER1_type 0 324 1 25 0 0 0 chr3 30533680 30533705 -187503453 + AT_rich Low_complexity Low_complexity 1 25 0 353 224 0 24 chr3 30533904 30533989 -187503169 - MIR SINE MIR 0 262 180 829 213 132 30 chr3 30535242 30535439 -187501719 - MER20 DNA MER1_type 0 219 3 694 214 92 29 chr3 30535616 30535822 -187501336 + L1ME3 LINE L1 5943 6161 -1 983 348 117 16 chr3 30536839 30537483 -187499675 - L3 LINE CR1 -583 994 286 1986 189 37 39 chr3 30537509 30537995 -187499163 - L1ME1 LINE L1 -38 6128 5644 533 265 42 24 chr3 30538269 30538435 -187498723 - MIR SINE MIR -15 247 79 292 353 0 40 chr3 30539531 30539704 -187497454 + C-rich Low_complexity Low_complexity 1 166 0 3179 197 44 21 chr3 30540926 30541623 -187495535 + L1PA12 LINE L1 984 2517 -5067 14195 107 17 5 chr3 30541860 30544039 -187493119 - L1P LINE L1 -1562 4584 2379 1925 114 19 45 chr3 30544535 30544843 -187492315 - AluSx SINE Alu -12 300 1 21 82 0 0 chr3 30545215 30545264 -187491894 + AT_rich Low_complexity Low_complexity 1 49 0 429 209 34 104 chr3 30545558 30545896 -187491262 + MLT1H LTR MaLR 90 549 0 2443 53 3 13 chr3 30546069 30546372 -187490786 - AluY SINE Alu -9 302 3 194 237 40 40 chr3 30546894 30546970 -187490188 - MIR SINE MIR -58 204 129 497 319 156 21 chr3 30547127 30547562 -187489596 - MLT1L LTR MaLR -10 605 112 449 209 71 93 chr3 30547923 30548121 -187489037 - L1MC4a LINE L1 -60 7748 6090 319 259 51 57 chr3 30548131 30548289 -187488869 - L1ME4a LINE L1 -176 5945 5789 456 329 69 52 chr3 30548301 30548705 -187488453 - L1ME4a LINE L1 -2143 5665 5255 192 152 0 0 chr3 30549104 30549137 -187488021 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 238 346 96 0 chr3 30549152 30549256 -187487902 - L2 LINE L2 0 3313 3200 754 270 25 5 chr3 30549350 30549546 -187487612 + L2 LINE L2 2541 2740 -574 633 280 60 40 chr3 30549651 30549901 -187487257 - MER93a LTR ERV1 -56 346 92 245 289 72 62 chr3 30550053 30550150 -187487008 - L2 LINE L2 -36 3236 3139 406 238 0 12 chr3 30550690 30550774 -187486384 - MIR SINE MIR -171 91 9 239 291 8 43 chr3 30550776 30550893 -187486265 - HAL1 LINE L1 -941 1566 1454 214 128 0 51 chr3 30550893 30550932 -187486226 + (TTCCC)n Simple_repeat Simple_repeat 5 41 0 989 233 40 24 chr3 30550942 30551191 -187485967 - MLT1F LTR MaLR -289 253 1 207 0 0 0 chr3 30551439 30551462 -187485696 + (CAAT)n Simple_repeat Simple_repeat 4 26 0 946 275 25 11 chr3 30551941 30552225 -187484933 - MLT1H LTR MaLR -261 288 1 1083 152 69 73 chr3 30552266 30552628 -187484530 + MER31A LTR ERV1 10 483 -2 260 132 0 0 chr3 30553702 30553740 -187483418 - MLT1L LTR MaLR -414 201 164 606 321 11 11 chr3 30554014 30554204 -187482954 + L2 LINE L2 3124 3313 0 6132 153 50 40 chr3 30556063 30557241 -187479917 + L1P LINE L1 11 1200 -4946 340 279 125 0 chr3 30557389 30557493 -187479665 - L3 LINE CR1 -1001 576 460 23 0 0 0 chr3 30558457 30558480 -187478678 + AT_rich Low_complexity Low_complexity 1 23 0 405 0 0 0 chr3 30558539 30558584 -187478574 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 1388 175 103 31 chr3 30558634 30558954 -187478204 + MER2 DNA MER2_type 2 344 0 22 0 0 0 chr3 30558967 30558989 -187478169 + AT_rich Low_complexity Low_complexity 1 22 0 5466 219 19 6 chr3 30559284 30560538 -187476620 + L1 LINE L1 2184 3453 -2693 9712 87 43 3 chr3 30560647 30562155 -187475003 + L1P LINE L1 2175 3743 -2403 233 326 47 0 chr3 30562464 30562550 -187474608 - MIR SINE MIR -6 256 167 650 247 52 6 chr3 30564379 30564553 -187472605 - MLT1G LTR MaLR -408 182 1 23 0 0 0 chr3 30564769 30564792 -187472366 + AT_rich Low_complexity Low_complexity 1 23 0 1933 138 0 7 chr3 30564792 30565075 -187472083 - AluSx SINE Alu -31 281 1 324 102 0 0 chr3 30566588 30566637 -187470521 + (CA)n Simple_repeat Simple_repeat 1 49 0 2729 235 59 11 chr3 30567659 30568699 -187468459 - L1MEc LINE L1 -3167 3048 1997 7120 62 14 1 chr3 30568811 30570045 -187467113 - L1PA5 LINE L1 -28 6126 4878 550 186 57 71 chr3 30570867 30571007 -187466151 - L1M3f LINE L1 -4946 382 245 236 406 0 9 chr3 30571433 30571539 -187465619 + MER5A DNA MER1_type 35 139 -50 1985 131 0 13 chr3 30572831 30573129 -187464029 + AluSx SINE Alu 1 294 -18 27 29 0 0 chr3 30573297 30573331 -187463827 + AT_rich Low_complexity Low_complexity 1 34 0 2388 220 31 41 chr3 30573480 30574116 -187463042 - L1ME1 LINE L1 -2 6164 5535 814 286 65 62 chr3 30574116 30574700 -187462458 - PABL_B LTR ERV1 0 667 82 406 248 37 0 chr3 30574845 30574954 -187462204 - L1ME1 LINE L1 -867 5279 5167 380 189 123 0 chr3 30575264 30575386 -187461772 + MLT1B LTR MaLR 249 385 -5 212 267 89 11 chr3 30575573 30575663 -187461495 + MIR SINE MIR 47 143 -119 3526 169 25 53 chr3 30577064 30577838 -187459320 + L1MC1 LINE L1 5566 6317 -16 1792 196 78 89 chr3 30577876 30578426 -187458732 - MLT1E1 LTR MaLR -100 554 11 2270 203 97 23 chr3 30580945 30581463 -187455695 + MER68 LTR ERV1 1 556 -6 310 316 72 62 chr3 30583050 30583357 -187453801 + L1M4 LINE L1 4741 5050 -1096 758 120 0 0 chr3 30583474 30583582 -187453576 + L1MA2 LINE L1 6197 6304 0 2018 126 14 0 chr3 30583747 30584040 -187453118 - AluSc SINE Alu -12 297 1 2145 117 28 3 chr3 30584240 30584565 -187452593 + MLT2A2 LTR ERVL 76 408 -45 360 190 0 0 chr3 30584568 30584647 -187452511 + (CATATA)n Simple_repeat Simple_repeat 6 84 0 314 164 0 0 chr3 30584647 30584702 -187452456 + MLT2A2 LTR ERVL 399 453 0 780 139 7 33 chr3 30584724 30584875 -187452283 - L1MCa LINE L1 -5228 1198 1052 1359 115 24 5 chr3 30584875 30585084 -187452074 - pTR5 LTR ERV1 -2054 384 172 303 174 47 35 chr3 30585087 30585173 -187451985 - LTR30 LTR ERV1 -80 642 556 184 313 16 0 chr3 30585905 30585969 -187451189 + L2 LINE L2 3183 3247 -66 1266 211 24 37 chr3 30586105 30586399 -187450759 + AluJb SINE Alu 2 291 -21 1811 204 26 24 chr3 30587646 30588108 -187449050 + L1ME LINE L1 3474 3936 -2210 300 269 181 20 chr3 30589055 30589269 -187447889 + L1ME LINE L1 5588 5837 -284 5189 118 43 6 chr3 30590678 30591772 -187445386 - L1PA6 LINE L1 -162 5992 4856 10671 71 12 5 chr3 30591966 30593422 -187443736 + L1P LINE L1 1354 2819 -3327 2118 226 88 17 chr3 30593631 30594154 -187443004 + MLT1F1 LTR MaLR 6 565 -2 265 238 20 0 chr3 30594821 30594922 -187442236 + (TA)n Simple_repeat Simple_repeat 2 104 0 853 320 136 18 chr3 30594925 30595431 -187441727 + L3 LINE CR1 682 1247 -330 30 45 0 0 chr3 30595619 30595663 -187441495 + AT_rich Low_complexity Low_complexity 1 44 0 267 325 12 0 chr3 30595766 30595849 -187441309 + L3 LINE CR1 1289 1372 -205 2126 108 33 20 chr3 30595940 30596245 -187440913 + AluSx SINE Alu 1 309 -3 1091 214 0 0 chr3 30597273 30597460 -187439698 - MER5A DNA MER1_type -2 187 1 1786 241 77 20 chr3 30598685 30599292 -187437866 - L1M4 LINE L1 -3176 2970 2329 2213 118 49 29 chr3 30599297 30599644 -187437514 + THE1B LTR MaLR 11 364 0 3505 151 7 126 chr3 30599644 30600682 -187436476 + THE1B-int LTR MaLR 1 914 -666 2608 233 3 9 chr3 30601144 30601720 -187435438 + HERVK13 LTR ERVK 4572 5144 -2972 3541 43 5 0 chr3 30601723 30602138 -187435020 - LTR13 LTR ERVK -528 479 63 560 234 58 13 chr3 30602462 30602616 -187434542 + MIR SINE MIR 102 262 0 1552 220 35 8 chr3 30602798 30603171 -187433987 + MER1A DNA MER1_type 1 383 -146 1121 229 9 0 chr3 30603548 30603771 -187433387 - MLT1A1 LTR MaLR -2 363 139 209 321 92 15 chr3 30603920 30604051 -187433107 + MIR SINE MIR 57 197 -65 225 94 0 0 chr3 30605023 30605055 -187432103 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1063 188 0 21 chr3 30605063 30605255 -187431903 - AluJo SINE Alu -38 274 87 240 143 95 0 chr3 30605272 30605314 -187431844 - L1ME2 LINE L1 -39 6125 6080 248 59 29 0 chr3 30605341 30605375 -187431783 - MER3 DNA MER1_type -160 49 15 507 282 120 38 chr3 30605375 30605819 -187431339 - L1ME3 LINE L1 -143 6019 5534 1635 157 0 4 chr3 30606243 30606492 -187430666 - AluJb SINE Alu -64 248 1 961 215 31 19 chr3 30606496 30606757 -187430401 + MER4-int LTR ERV1 2617 2880 -2056 594 212 52 57 chr3 30606803 30607097 -187430061 + MER4-int LTR ERV1 2552 5003 -1595 23 33 0 0 chr3 30608236 30608266 -187428892 + AT_rich Low_complexity Low_complexity 1 30 0 251 194 65 12 chr3 30608514 30608684 -187428474 + (TA)n Simple_repeat Simple_repeat 2 180 0 1356 68 2 70 chr3 30608830 30609155 -187428003 + L1PA6 LINE L1 5207 5512 -642 2840 91 7 36 chr3 30609419 30609868 -187427290 + L1PA6 LINE L1 5703 6138 -16 22 35 0 0 chr3 30611227 30611256 -187425902 + AT_rich Low_complexity Low_complexity 1 29 0 2334 168 29 5 chr3 30611951 30612368 -187424790 + L1MC1 LINE L1 5888 6314 -19 4814 181 34 20 chr3 30612993 30613983 -187423175 - L1M1 LINE L1 -4065 1263 342 306 0 0 0 chr3 30614429 30614463 -187422695 + (TG)n Simple_repeat Simple_repeat 2 35 0 587 307 83 21 chr3 30614481 30614807 -187422351 - L1MC4a LINE L1 -1934 5874 5529 31 0 0 0 chr3 30615233 30615264 -187421894 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr3 30615831 30615860 -187421298 + AT_rich Low_complexity Low_complexity 1 29 0 401 236 42 24 chr3 30616134 30616299 -187420859 + L1ME LINE L1 5652 5819 -347 192 77 0 0 chr3 30616801 30616827 -187420331 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 219 282 242 8 chr3 30622069 30622193 -187414965 + L2 LINE L2 2602 2754 -560 574 277 19 42 chr3 30622439 30622652 -187414506 - L1M4 LINE L1 -3549 2597 2390 471 63 0 0 chr3 30623211 30623274 -187413884 + (TA)n Simple_repeat Simple_repeat 1 63 0 582 192 13 53 chr3 30624473 30624624 -187412534 + MER63 DNA MER1_type 1 771 -65 24 67 0 0 chr3 30625414 30625459 -187411699 + AT_rich Low_complexity Low_complexity 1 45 0 1005 209 30 82 chr3 30626635 30626965 -187410193 - MLT1A2 LTR MaLR 0 374 62 271 339 0 35 chr3 30627111 30627226 -187409932 - MER5A DNA MER1_type -58 131 21 467 302 20 35 chr3 30628717 30628919 -187408239 + MLT1J2 LTR MaLR 29 227 -223 34 24 0 0 chr3 30629210 30629251 -187407907 + AT_rich Low_complexity Low_complexity 1 41 0 1434 203 37 7 chr3 30629675 30629975 -187407183 + AluJb SINE Alu 4 312 0 381 165 9 122 chr3 30629984 30630099 -187407059 + Charlie5 DNA MER1_type 2484 2585 -27 630 316 65 11 chr3 30630160 30630438 -187406720 + LTR16C LTR ERVL 107 399 -92 309 276 32 76 chr3 30630740 30630925 -187406233 + Charlie8 DNA MER1_type 89 265 -2152 895 212 33 11 chr3 30631409 30631593 -187405565 - MER5A DNA MER1_type 0 189 2 2142 115 3 0 chr3 30633480 30633775 -187403383 - AluSx SINE Alu -16 296 1 1986 135 20 7 chr3 30633779 30634076 -187403082 - AluSx SINE Alu -11 301 1 2214 86 24 0 chr3 30634905 30635074 -187402084 - AluY SINE Alu -12 299 119 300 27 0 0 chr3 30635074 30635111 -187402047 + (TG)n Simple_repeat Simple_repeat 2 38 0 2214 86 24 0 chr3 30635111 30635233 -187401925 - AluY SINE Alu -192 119 1 496 290 52 26 chr3 30636200 30636355 -187400803 + MIR SINE MIR 35 193 -69 533 309 69 18 chr3 30636600 30636817 -187400341 - MIR SINE MIR -27 235 8 484 339 7 18 chr3 30638109 30638470 -187398688 + C-rich Low_complexity Low_complexity 1 356 0 268 214 69 28 chr3 30639541 30639686 -187397472 + AluJb SINE Alu 8 158 -144 2147 114 0 16 chr3 30639988 30640295 -187396863 + AluSx SINE Alu 1 302 -10 1313 93 88 5 chr3 30641219 30641413 -187395745 - AluSg SINE Alu -88 222 13 2140 112 0 0 chr3 30642846 30643123 -187394035 + AluY SINE Alu 11 287 -24 1829 95 4 8 chr3 30643122 30643374 -187393784 + AluY SINE Alu 50 300 -11 * 423 319 26 30 chr3 30643376 30643646 -187393512 + L1 LINE L1 4432 4700 -1446 259 219 122 12 chr3 30644520 30644602 -187392556 + MLT1H LTR MaLR 23 113 -436 2416 78 0 0 chr3 30644603 30644898 -187392260 - AluSx SINE Alu -17 295 1 1143 221 25 31 chr3 30645562 30645879 -187391279 - L1P LINE L1 -2491 3655 3341 2523 45 0 19 chr3 30646328 30646636 -187390522 - AluY SINE Alu -9 302 1 509 279 42 5 chr3 30646647 30646862 -187390296 - L1MB8 LINE L1 -1 6177 5955 5101 166 12 4 chr3 30647073 30648076 -187389082 - L1P LINE L1 -751 5395 4385 499 139 0 0 chr3 30648233 30648312 -187388846 + L1PA16 LINE L1 6085 6163 -3 2238 242 54 23 chr3 30648480 30649264 -187387894 + L1MDa LINE L1 3 971 -5569 290 274 9 57 chr3 30650344 30650450 -187386708 - MIR3 SINE MIR -18 190 90 665 108 0 54 chr3 30650763 30650874 -187386284 + L1PA3 LINE L1 6039 6143 -12 7058 150 21 11 chr3 30651056 30653395 -187383763 + L1MA3 LINE L1 3937 6296 -9 477 0 0 0 chr3 30653395 30653448 -187383710 + (TA)n Simple_repeat Simple_repeat 2 54 0 309 250 184 20 chr3 30653953 30654105 -187383053 + L1MDa LINE L1 1283 1459 -5081 1236 241 96 42 chr3 30654117 30654280 -187382878 + L1ME3A LINE L1 5651 5804 -366 1976 123 14 0 chr3 30654280 30654557 -187382601 + AluSg SINE Alu 1 281 -29 180 0 0 0 chr3 30654561 30654581 -187382577 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1236 241 96 42 chr3 30654581 30654893 -187382265 + L1ME3A LINE L1 5806 6157 -13 1386 195 6 58 chr3 30655105 30655433 -187381725 + AluJo SINE Alu 1 311 -1 190 398 41 0 chr3 30655787 30655885 -187381273 + L2 LINE L2 3160 3261 -11 298 345 26 9 chr3 30656936 30657049 -187380109 - MIR SINE MIR -62 146 32 2043 205 92 44 chr3 30657447 30657988 -187379170 + MLT1F1 LTR MaLR 1 567 0 243 123 263 0 chr3 30658074 30658131 -187379027 - MER116 DNA Mariner -6 74 3 8118 201 8 39 chr3 30658134 30660744 -187376414 - L1PA14 LINE L1 -4 6157 3603 243 0 0 0 chr3 30660744 30660771 -187376387 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 40691 32 23 1 chr3 30660772 30666782 -187370376 - L1PA2 LINE L1 -4 6151 4 193 380 19 19 chr3 30669398 30669506 -187367652 - L2 LINE L2 -16 3256 3149 609 272 110 11 chr3 30669535 30669726 -187367432 + MIR SINE MIR 26 235 -27 686 316 25 24 chr3 30670277 30670728 -187366430 - L1ME4a LINE L1 -254 5867 5409 448 317 35 22 chr3 30671556 30671783 -187365375 + MER90 LTR ERV1 320 549 -26 5237 237 22 156 chr3 30671929 30674192 -187362966 - L1M2 LINE L1 -4883 2326 1 3465 59 0 2 chr3 30674725 30675164 -187361994 + L1PA5 LINE L1 5717 6154 0 315 0 0 0 chr3 30675525 30675560 -187361598 + (TG)n Simple_repeat Simple_repeat 1 35 0 887 222 168 61 chr3 30675594 30676035 -187361123 + MER41B LTR ERV1 114 601 -34 933 239 59 42 chr3 30676069 30676475 -187360683 + Charlie4a DNA MER1_type 65 477 -31 183 220 0 0 chr3 30676484 30676534 -187360624 + (CA)n Simple_repeat Simple_repeat 2 51 0 183 353 84 0 chr3 30677204 30677323 -187359835 + MIR SINE MIR 29 157 -105 1399 182 14 62 chr3 30677343 30677676 -187359482 + L1MA4 LINE L1 1959 2274 -4575 2322 86 0 0 chr3 30677676 30677968 -187359190 + AluY SINE Alu 1 292 -19 1399 182 14 62 chr3 30677968 30678002 -187359156 + L1MA4 LINE L1 2274 2308 -4541 1854 62 0 23 chr3 30678002 30678258 -187358900 + MER41A LTR ERV1 218 467 -87 12073 190 36 30 chr3 30678263 30681238 -187355920 + L1MA4 LINE L1 2309 5314 -1534 2031 144 3 19 chr3 30681238 30681550 -187355608 + AluSq SINE Alu 1 307 -6 12073 190 36 30 chr3 30681550 30682212 -187354946 + L1MA4 LINE L1 5314 5970 -878 1776 128 22 22 chr3 30682212 30682681 -187354477 + MER4A LTR ERV1 55 660 -4 207 0 0 0 chr3 30682710 30682733 -187354425 + (A)n Simple_repeat Simple_repeat 1 23 0 1819 135 0 6 chr3 30682737 30683056 -187354102 + L1MA4 LINE L1 5996 6312 -693 1040 198 34 0 chr3 30683056 30683285 -187353873 + L1MA4 LINE L1 6752 6996 -6 211 194 0 0 chr3 30683609 30683645 -187353513 + CT-rich Low_complexity Low_complexity 2 37 0 446 333 82 11 chr3 30684323 30684506 -187352652 + L1MC/D LINE L1 5 200 -5919 1384 288 145 10 chr3 30684710 30685482 -187351676 - L1MC4a LINE L1 -1636 6172 5297 367 318 48 66 chr3 30685493 30685782 -187351376 - L1MC4a LINE L1 -960 5186 4903 328 322 35 28 chr3 30685802 30685945 -187351213 + L1MC/D LINE L1 309 452 -5667 2377 55 6 13 chr3 30686006 30686317 -187350841 - AluY SINE Alu -2 309 1 421 315 125 29 chr3 30686327 30686670 -187350488 + L1MC/D LINE L1 2771 3146 -2983 297 300 124 21 chr3 30686747 30686980 -187350178 + L1MC/D LINE L1 5541 5797 -1994 2283 102 0 0 chr3 30687001 30687305 -187349853 + AluY SINE Alu 1 304 -7 213 218 12 54 chr3 30687547 30687659 -187349499 + A-rich Low_complexity Low_complexity 1 107 0 396 263 77 62 chr3 30689332 30689541 -187347617 - MIR SINE MIR -49 213 2 23 33 0 0 chr3 30690632 30690662 -187346496 + AT_rich Low_complexity Low_complexity 1 30 0 866 236 37 23 chr3 30693810 30694026 -187343132 + MER20 DNA MER1_type 1 219 0 449 235 102 102 chr3 30694133 30694465 -187342693 + MLT1I LTR MaLR 71 402 -7 230 114 0 23 chr3 30694548 30694592 -187342566 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 291 28 0 0 chr3 30694594 30694630 -187342528 + (CA)n Simple_repeat Simple_repeat 2 37 0 24 0 0 0 chr3 30694819 30694843 -187342315 + AT_rich Low_complexity Low_complexity 1 24 0 523 305 129 28 chr3 30694843 30695269 -187341889 - L1MDa LINE L1 -3634 2495 2068 356 294 169 13 chr3 30695560 30695833 -187341325 - L1MDa LINE L1 -4594 1535 1290 750 345 88 39 chr3 30695942 30696685 -187340473 - L1MDa LINE L1 -4959 1160 382 342 0 0 0 chr3 30696688 30696726 -187340432 + (T)n Simple_repeat Simple_repeat 1 38 0 482 211 32 49 chr3 30697399 30697522 -187339636 - MER45A DNA AcHobo 0 178 58 37 76 0 0 chr3 30697670 30697749 -187339409 + AT_rich Low_complexity Low_complexity 1 79 0 4293 146 44 5 chr3 30698141 30698921 -187338237 + L1PB4 LINE L1 5347 6156 0 453 291 209 11 chr3 30699127 30699309 -187337849 + MIR SINE MIR 36 253 -9 703 239 11 6 chr3 30699421 30699597 -187337561 - MER5B DNA MER1_type -1 177 1 439 308 69 65 chr3 30699683 30699930 -187337228 + MIR SINE MIR 14 261 -1 303 128 21 0 chr3 30701541 30701588 -187335570 - THE1C LTR MaLR 0 428 381 * 2762 78 28 74 chr3 30701587 30702046 -187335112 + MLT2A1 LTR ERVL 7 444 0 19225 71 15 53 chr3 30702046 30704797 -187332361 + HERVL-A1 LTR ERVL 1 2647 -3007 20497 77 25 13 chr3 30704797 30706577 -187330581 + HERVL-A1 LTR ERVL 2894 4751 -903 182 147 0 29 chr3 30706577 30706611 -187330547 + L2 LINE L2 1661 1693 -1621 20497 77 25 13 chr3 30706611 30707526 -187329632 + HERVL-A1 LTR ERVL 4751 5654 0 2690 96 61 28 chr3 30707526 30707914 -187329244 + MLT2A1 LTR ERVL 1 406 -38 450 0 0 0 chr3 30707914 30707964 -187329194 + (TA)n Simple_repeat Simple_repeat 2 51 0 2690 96 61 28 chr3 30707964 30708003 -187329155 + MLT2A1 LTR ERVL 406 442 -2 830 184 84 145 chr3 30708004 30708352 -187328806 - THE1C LTR MaLR -67 308 1 9210 137 15 37 chr3 30708352 30709933 -187327225 - THE1C-int LTR MaLR 0 1580 35 1283 183 32 39 chr3 30709939 30710223 -187326935 - THE1C LTR MaLR -93 282 1 706 296 23 8 chr3 30710420 30710677 -187326481 - MIR SINE MIR 0 262 2 1817 153 0 0 chr3 30710781 30711056 -187326102 + AluSx SINE Alu 1 275 -37 432 0 0 0 chr3 30711064 30711112 -187326046 + (TAA)n Simple_repeat Simple_repeat 2 49 0 397 272 19 10 chr3 30711549 30711652 -187325506 - MER81 DNA DNA 0 114 11 353 319 0 0 chr3 30711648 30711742 -187325416 - MER81 DNA DNA -20 94 1 * 1261 223 63 36 chr3 30711769 30712133 -187325025 + MLT1A2 LTR MaLR 1 374 0 7442 33 10 0 chr3 30714385 30715522 -187321636 - L1PA4 LINE L1 0 6155 5014 2182 27 0 0 chr3 30715522 30715781 -187321377 + L1PA4 LINE L1 4762 5020 -1126 479 309 144 10 chr3 30715990 30716191 -187320967 + MIR SINE MIR 31 258 -4 45 45 0 0 chr3 30716549 30716615 -187320543 + AT_rich Low_complexity Low_complexity 1 66 0 191 401 36 6 chr3 30717009 30717176 -187319982 + L2 LINE L2 2696 2867 -447 253 159 101 14 chr3 30717236 30717305 -187319853 + MER116 DNA Mariner 6 80 0 537 295 41 58 chr3 30717470 30717956 -187319202 + LTR33 LTR ERVL 5 521 0 485 298 45 11 chr3 30717959 30718137 -187319021 - MIR SINE MIR -48 214 31 264 323 112 12 chr3 30718355 30718516 -187318642 + L3 LINE CR1 645 821 -756 358 125 0 42 chr3 30718586 30718658 -187318500 - L1MB7 LINE L1 -19 6165 6097 234 129 57 100 chr3 30718738 30718808 -187318350 - MLT1K LTR MaLR -138 450 384 328 327 101 6 chr3 30718893 30719061 -187318097 - MLT1K LTR MaLR -318 270 87 771 353 52 29 chr3 30719155 30719640 -187317518 + L3 LINE CR1 836 1331 -246 493 284 132 15 chr3 30719821 30720025 -187317133 + MIR SINE MIR 35 262 0 378 248 97 35 chr3 30721239 30721352 -187315806 - L2 LINE L2 -12 3301 3182 561 296 99 32 chr3 30721355 30721669 -187315489 + MLT1E LTR MaLR 4 338 -255 325 297 68 61 chr3 30721673 30721821 -187315337 - L2 LINE L2 -1468 1846 1698 189 74 0 0 chr3 30722156 30722183 -187314975 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 450 319 117 8 chr3 30722284 30722550 -187314608 - L2 LINE L2 -1667 1647 1353 466 127 0 0 chr3 30722671 30722742 -187314416 + AluSp/q SINE Alu 226 296 -17 300 145 16 0 chr3 30722742 30722804 -187314354 - L1 LINE L1 -1817 4329 4267 766 181 77 16 chr3 30722835 30723017 -187314141 - L1 LINE L1 -1010 5136 4944 7130 161 66 33 chr3 30724821 30726730 -187310428 - L1MA8 LINE L1 -2 6289 4269 2044 120 3 0 chr3 30726730 30727081 -187310077 + AluSq SINE Alu 1 352 0 7130 161 66 33 chr3 30727081 30727821 -187309337 - L1MA8 LINE L1 -2022 4269 3554 1373 226 14 0 chr3 30727824 30728099 -187309059 + AluJo SINE Alu 1 279 -33 231 61 0 0 chr3 30728099 30728132 -187309026 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 797 179 62 6 chr3 30728172 30728351 -187308807 - L1MA8 LINE L1 -2585 3561 3373 23 33 0 0 chr3 30728500 30728530 -187308628 + AT_rich Low_complexity Low_complexity 1 30 0 335 271 31 39 chr3 30728983 30729112 -187308046 - MLT1H LTR MaLR -16 533 406 588 285 36 51 chr3 30729418 30729671 -187307487 + MIR SINE MIR 14 262 0 2090 126 0 13 chr3 30729806 30730107 -187307051 - AluSx SINE Alu -15 297 1 216 97 0 0 chr3 30730288 30730319 -187306839 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 23 0 0 0 chr3 30730905 30730928 -187306230 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 30730968 30730990 -187306168 + AT_rich Low_complexity Low_complexity 1 22 0 283 229 29 14 chr3 30731608 30731678 -187305480 - MER5B DNA MER1_type -104 74 4 275 296 0 0 chr3 30731755 30731843 -187305315 - Charlie2 DNA MER1_type -2599 263 176 282 238 79 30 chr3 30731869 30731970 -187305188 - Charlie2 DNA MER1_type -2752 110 5 411 179 107 54 chr3 30731972 30732052 -187305106 + L2 LINE L2 3196 3285 -28 2440 228 16 44 chr3 30732052 30732622 -187304536 + MLT2B3 LTR ERVL 1 554 0 411 179 107 54 chr3 30732622 30732653 -187304505 + L2 LINE L2 3285 3313 0 21 57 0 0 chr3 30732987 30733022 -187304136 + AT_rich Low_complexity Low_complexity 1 35 0 26 74 0 0 chr3 30733195 30733249 -187303909 + AT_rich Low_complexity Low_complexity 1 54 0 207 0 0 0 chr3 30733405 30733428 -187303730 + (TTAAA)n Simple_repeat Simple_repeat 4 26 0 507 324 109 19 chr3 30733608 30733920 -187303238 + L2 LINE L2 2521 2860 -454 753 234 16 113 chr3 30733960 30734280 -187302878 + L2 LINE L2 3021 3309 -4 1565 175 3 62 chr3 30734335 30734644 -187302514 - AluJb SINE Alu -21 291 1 1711 261 109 4 chr3 30734871 30735384 -187301774 + MLT1F1 LTR MaLR 1 567 0 378 324 43 7 chr3 30735435 30735574 -187301584 + MIR SINE MIR 82 225 -37 1496 273 33 9 chr3 30735901 30736329 -187300829 + LTR16A LTR ERVL 13 450 0 991 222 19 0 chr3 30736337 30736544 -187300614 - ERVL LTR ERVL -4789 975 765 2533 177 14 14 chr3 30736711 30737202 -187299956 + L1MA7 LINE L1 5629 6119 -172 358 339 40 24 chr3 30737267 30737391 -187299767 + MIR SINE MIR 1 126 -136 195 42 0 0 chr3 30738594 30738618 -187298540 + (TG)n Simple_repeat Simple_repeat 2 25 0 414 39 0 0 chr3 30738750 30738802 -187298356 + (TG)n Simple_repeat Simple_repeat 2 53 0 189 0 0 0 chr3 30738833 30738854 -187298304 + (TG)n Simple_repeat Simple_repeat 2 22 0 2000 110 36 0 chr3 30740014 30740295 -187296863 + AluSc SINE Alu 1 291 -18 369 185 0 65 chr3 30740302 30740394 -187296764 - MER3 DNA MER1_type 0 209 124 431 260 204 10 chr3 30740828 30741024 -187296134 + MLT2E LTR ERVL 393 626 -2 326 322 90 61 chr3 30741168 30741678 -187295480 - MLT1L LTR MaLR -87 528 4 374 267 34 23 chr3 30744901 30745077 -187292081 + GA-rich Low_complexity Low_complexity 3 180 0 223 356 52 22 chr3 30745841 30745976 -187291182 + MIR SINE MIR 50 188 -74 259 307 79 26 chr3 30746787 30746901 -187290257 + L2 LINE L2 1181 1300 -2014 183 179 232 36 chr3 30747161 30747217 -187289941 + MER5A DNA MER1_type 1 67 -122 183 206 0 0 chr3 30747233 30747267 -187289891 + MER5A DNA MER1_type 153 186 -3 410 309 34 23 chr3 30747281 30747456 -187289702 - MER5B DNA MER1_type 0 178 2 1183 330 119 28 chr3 30747611 30748980 -187288178 + L2 LINE L2 1805 3306 -7 26 0 0 0 chr3 30749362 30749388 -187287770 + AT_rich Low_complexity Low_complexity 1 26 0 28 0 0 0 chr3 30751642 30751670 -187285488 + AT_rich Low_complexity Low_complexity 1 28 0 225 226 0 0 chr3 30752163 30752216 -187284942 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 35 24 0 0 chr3 30752848 30752890 -187284268 + AT_rich Low_complexity Low_complexity 1 42 0 1689 204 0 18 chr3 30752934 30753272 -187283886 + MLT1A1 LTR MaLR 2 333 -32 254 200 15 15 chr3 30753780 30753845 -187283313 + MLT1J2 LTR MaLR 15 79 -371 404 244 52 17 chr3 30753970 30754085 -187283073 + MER58B DNA MER1_type 222 340 -1 24 67 0 0 chr3 30754262 30754307 -187282851 + AT_rich Low_complexity Low_complexity 1 45 0 32651 85 12 9 chr3 30754354 30758906 -187278252 + L1PA5 LINE L1 11 4576 -1570 3561 57 11 0 chr3 30758907 30759361 -187277797 + L1PA5 LINE L1 5696 6154 0 1056 274 94 39 chr3 30759538 30760005 -187277153 + MLT1J LTR MaLR 3 495 -16 447 232 62 26 chr3 30761638 30761830 -187275328 + LTR41 LTR ERVL 101 353 -420 300 197 61 0 chr3 30761987 30762053 -187275105 + LTR41 LTR ERVL 601 670 -103 2038 125 0 13 chr3 30762105 30762408 -187274750 - AluSc SINE Alu -10 299 1 232 222 16 16 chr3 30762421 30762484 -187274674 + LTR41 LTR ERVL 703 765 -8 399 297 61 47 chr3 30763181 30763477 -187273681 + ERVL LTR ERVL 904 1203 -4561 597 314 96 28 chr3 30763650 30764004 -187273154 + ERVL LTR ERVL 1453 1830 -3824 679 285 86 8 chr3 30764397 30764653 -187272505 + LTR41 LTR ERVL 1 276 -497 407 226 95 78 chr3 30764779 30765022 -187272136 + LTR41 LTR ERVL 496 742 -31 22 56 0 0 chr3 30765210 30765246 -187271912 + AT_rich Low_complexity Low_complexity 1 36 0 41 82 0 0 chr3 30765610 30765707 -187271451 + AT_rich Low_complexity Low_complexity 1 97 0 335 181 9 69 chr3 30765968 30766084 -187271074 - HAL1b LINE L1 -535 813 705 326 324 128 0 chr3 30766093 30766272 -187270886 - L1ME3A LINE L1 -8 6162 5961 309 232 53 0 chr3 30766312 30766407 -187270751 - HAL1b LINE L1 -713 635 536 404 208 135 48 chr3 30766450 30766657 -187270501 - HAL1b LINE L1 -693 655 431 221 128 43 0 chr3 30766657 30766704 -187270454 + (TA)n Simple_repeat Simple_repeat 1 49 0 490 342 23 26 chr3 30766814 30767121 -187270037 - LTR16B LTR ERVL -122 342 37 323 298 58 42 chr3 30767176 30767203 -187269955 - HAL1b LINE L1 -969 379 354 1221 192 38 92 chr3 30767203 30767520 -187269638 - AluJo SINE Alu -2 300 1 323 298 58 42 chr3 30767520 30767683 -187269475 - HAL1b LINE L1 -994 354 186 35 54 0 0 chr3 30768076 30768132 -187269026 + AT_rich Low_complexity Low_complexity 1 56 0 924 162 60 0 chr3 30768451 30768618 -187268540 + L1PA16 LINE L1 5981 6157 -9 32 43 0 0 chr3 30768619 30768665 -187268493 + AT_rich Low_complexity Low_complexity 1 46 0 736 284 206 36 chr3 30769082 30769556 -187267602 + MLT1G1 LTR MaLR 1 592 -3 302 317 0 9 chr3 30769559 30769682 -187267476 + MLT1G1-int LTR MaLR 1 102 -1269 240 320 39 0 chr3 30769828 30769906 -187267252 + MLT1G1-int LTR MaLR 438 518 -853 790 285 75 60 chr3 30770942 30771571 -187265587 + L1ME4a LINE L1 5327 5964 -157 7500 24 1 1 chr3 30772248 30773183 -187263975 + L1PA3 LINE L1 5269 6203 0 359 319 52 37 chr3 30774154 30774289 -187262869 - MIR3 SINE MIR -70 138 2 585 329 70 4 chr3 30774499 30774742 -187262416 - MIR SINE MIR 0 262 4 26 0 0 0 chr3 30775258 30775284 -187261874 + AT_rich Low_complexity Low_complexity 1 26 0 367 322 66 25 chr3 30775521 30775642 -187261516 + L2 LINE L2 3133 3258 -14 25 0 0 0 chr3 30776202 30776227 -187260931 + AT_rich Low_complexity Low_complexity 1 25 0 275 125 107 0 chr3 30777637 30777693 -187259465 - L1MC4 LINE L1 -1366 6676 6615 183 156 0 0 chr3 30777694 30777726 -187259432 + (CATA)n Simple_repeat Simple_repeat 2 33 0 2131 194 78 13 chr3 30777727 30778175 -187258983 - MLT2B1 LTR ERVL -41 479 3 264 376 0 10 chr3 30778381 30778482 -187258676 - MER5B DNA MER1_type -78 100 1 277 305 53 0 chr3 30778546 30778641 -187258517 - MIR SINE MIR -48 214 115 2353 100 6 0 chr3 30779322 30779633 -187257525 - AluSp SINE Alu 0 313 1 944 232 67 14 chr3 30780147 30780475 -187256683 + MSTD LTR MaLR 5 396 0 434 316 33 52 chr3 30780883 30781041 -187256117 + MIR SINE MIR 52 207 -55 2084 141 3 0 chr3 30781041 30781338 -187255820 + AluSx SINE Alu 1 298 -14 434 316 33 52 chr3 30781338 30781391 -187255767 + MIR SINE MIR 207 259 -3 856 52 0 9 chr3 30781910 30782025 -187255133 - L1P LINE L1 -3602 2544 2431 7504 26 5 0 chr3 30782025 30783101 -187254057 + L1PA4 LINE L1 5078 6144 -11 366 235 139 53 chr3 30783234 30783421 -187253737 + L2 LINE L2 2272 2474 -840 369 169 60 24 chr3 30783426 30783509 -187253649 - L2 LINE L2 -47 3266 3181 2167 102 0 40 chr3 30783701 30784026 -187253132 - AluSx SINE Alu 0 312 1 1947 123 11 3 chr3 30784697 30784981 -187252177 - AluSx SINE Alu -26 286 1 712 196 21 28 chr3 30784981 30785124 -187252034 - AluJo SINE Alu -170 142 1 1189 165 5 14 chr3 30785143 30785361 -187251797 - AluJb SINE Alu -18 294 79 357 239 125 11 chr3 30785917 30786093 -187251065 + L1M4 LINE L1 4951 5146 -1000 2201 94 0 0 chr3 30786181 30786456 -187250702 + AluSx SINE Alu 21 295 -17 2250 110 3 3 chr3 30786470 30786779 -187250379 + AluSx SINE Alu 1 309 -3 1802 175 7 0 chr3 30786849 30787140 -187250018 + AluJb SINE Alu 1 293 -19 426 264 88 55 chr3 30787955 30788228 -187248930 - L1MEc LINE L1 -4179 2217 1936 2162 101 27 3 chr3 30788230 30788526 -187248632 - AluSc SINE Alu -6 303 1 1216 117 0 0 chr3 30788528 30788699 -187248459 - AluSg/x SINE Alu -5 305 135 1478 112 0 0 chr3 30788885 30789082 -187248076 - AluSg/x SINE Alu -23 287 91 183 80 0 0 chr3 30789082 30789107 -187248051 + (A)n Simple_repeat Simple_repeat 1 25 0 2093 123 0 13 chr3 30789934 30790244 -187246914 + AluSq SINE Alu 1 306 -7 873 298 84 29 chr3 30791573 30791764 -187245394 + MARNA DNA Mariner 14 193 -393 722 214 0 0 chr3 30791764 30791895 -187245263 - FLAM_A SINE Alu -2 131 1 873 298 84 29 chr3 30791895 30792226 -187244932 + MARNA DNA Mariner 193 565 -21 257 303 66 29 chr3 30792660 30792779 -187244379 - MIR SINE MIR -78 130 9 2376 89 3 0 chr3 30794334 30794636 -187242522 + AluSx SINE Alu 1 303 -9 11862 13 1 0 chr3 30795583 30797454 -187239704 - L1HS LINE L1 -277 5878 4006 344 191 34 62 chr3 30797562 30797740 -187239418 + (GGGTG)n Simple_repeat Simple_repeat 4 176 0 264 30 0 0 chr3 30797971 30798004 -187239154 + (T)n Simple_repeat Simple_repeat 1 33 0 256 222 144 22 chr3 30799787 30799877 -187237281 + MIR3 SINE MIR 55 155 -53 333 155 33 5 chr3 30800556 30800628 -187236530 + AluY SINE Alu 35 95 -206 1138 296 77 25 chr3 30801250 30801547 -187235611 - LTR16C LTR ERVL 0 491 168 1244 211 97 57 chr3 30801547 30801898 -187235260 + MLT1A1 LTR MaLR 1 365 0 1138 296 77 25 chr3 30801898 30801992 -187235166 - LTR16C LTR ERVL -323 168 80 23 33 0 0 chr3 30802963 30802993 -187234165 + AT_rich Low_complexity Low_complexity 1 30 0 423 340 96 2 chr3 30803702 30803904 -187233254 - MIR SINE MIR -17 245 23 23 105 0 0 chr3 30804391 30804477 -187232681 + AT_rich Low_complexity Low_complexity 1 86 0 235 315 0 0 chr3 30805271 30805325 -187231833 - MER91 DNA MER1_type 0 140 87 1005 204 120 63 chr3 30806662 30806946 -187230212 - AluJo SINE Alu -1 301 2 1622 215 54 5 chr3 30806990 30807358 -187229800 - MLT1B LTR MaLR -4 386 1 215 360 33 67 chr3 30807384 30807534 -187229624 + MIR SINE MIR 31 175 -87 25 0 0 0 chr3 30808487 30808512 -187228646 + AT_rich Low_complexity Low_complexity 1 25 0 2851 176 62 0 chr3 30808554 30809102 -187228056 + LTR38B LTR ERV1 28 608 -3 880 294 69 62 chr3 30809306 30809942 -187227216 - L2 LINE L2 -22 3291 2657 180 200 0 0 chr3 30809988 30810028 -187227130 + GA-rich Low_complexity Low_complexity 3 42 0 264 122 0 41 chr3 30810139 30810188 -187226970 - L1MA1 LINE L1 0 6305 6257 7445 164 29 25 chr3 30810210 30810391 -187226767 - L1MA3 LINE L1 -23 7701 7522 1987 118 3 10 chr3 30810391 30810680 -187226478 + AluSq SINE Alu 1 287 -26 243 79 0 0 chr3 30810680 30810718 -187226440 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 7445 164 29 25 chr3 30810718 30810736 -187226422 - L1MA3 LINE L1 -202 7522 7506 369 0 0 0 chr3 30810736 30810777 -187226381 + (TC)n Simple_repeat Simple_repeat 2 42 0 243 0 0 0 chr3 30810776 30810803 -187226355 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 7445 164 29 25 chr3 30810777 30813085 -187224073 - L1MA3 LINE L1 -218 7506 5208 3304 202 53 20 chr3 30813087 30814165 -187222993 - L1MA3 LINE L1 -3071 4494 3383 2606 179 76 12 chr3 30814460 30815040 -187222118 - L1 LINE L1 -1976 4170 3554 1373 226 14 0 chr3 30815043 30815318 -187221840 + AluJo SINE Alu 1 279 -33 231 61 0 0 chr3 30815318 30815351 -187221807 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 784 184 62 6 chr3 30815391 30815570 -187221588 - L1 LINE L1 -2585 3561 3373 23 33 0 0 chr3 30815719 30815749 -187221409 + AT_rich Low_complexity Low_complexity 1 30 0 18386 41 55 3 chr3 30815822 30818158 -187219000 - L1P LINE L1 -3360 2786 331 * 19095 32 17 0 chr3 30818156 30821189 -187215969 + L1PA5 LINE L1 3064 6154 0 1989 210 91 47 chr3 30821233 30821827 -187215331 + L1MD2 LINE L1 5377 5996 -246 745 244 80 36 chr3 30821860 30822134 -187215024 + L1MD2 LINE L1 6061 6346 -13 268 265 32 28 chr3 30823174 30823283 -187213875 - MIR SINE MIR -66 142 72 441 326 87 9 chr3 30824154 30824384 -187212774 + LTR33 LTR ERVL 192 439 -82 396 0 0 0 chr3 30824471 30824515 -187212643 + (TG)n Simple_repeat Simple_repeat 1 44 0 2037 78 0 7 chr3 30824515 30824785 -187212373 - AluY SINE Alu -33 278 11 1779 162 19 16 chr3 30825703 30826012 -187211146 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr3 30826114 30826135 -187211023 + AT_rich Low_complexity Low_complexity 1 21 0 261 0 0 0 chr3 30826422 30826451 -187210707 + (TG)n Simple_repeat Simple_repeat 2 30 0 286 77 0 0 chr3 30826671 30826710 -187210448 + MADE1 DNA Mariner 42 80 0 200 240 67 53 chr3 30826731 30826806 -187210352 - MIR SINE MIR -140 122 47 199 191 0 149 chr3 30827934 30828028 -187209130 + L2 LINE L2 3149 3228 -85 678 347 92 9 chr3 30828611 30828957 -187208201 + MLT1K LTR MaLR 8 382 -206 297 331 67 61 chr3 30828997 30829221 -187207937 - MIR SINE MIR -24 238 9 461 238 210 0 chr3 30830458 30830601 -187206557 + MER5A DNA MER1_type 10 182 -7 746 220 20 0 chr3 30830842 30830992 -187206166 - MER5A DNA MER1_type 0 189 37 249 170 21 0 chr3 30832929 30832976 -187204182 - MLT2D LTR ERVL 0 414 367 645 219 7 13 chr3 30832980 30833135 -187204023 - MLT2D LTR ERVL -167 247 94 2358 104 0 0 chr3 30833824 30834133 -187203025 - AluSc SINE Alu 0 309 1 2653 161 46 2 chr3 30834442 30834940 -187202218 + L1MC1 LINE L1 5814 6333 0 27 0 0 0 chr3 30835937 30835964 -187201194 + AT_rich Low_complexity Low_complexity 1 27 0 406 302 50 35 chr3 30836040 30836242 -187200916 + MIR SINE MIR 18 222 -40 2931 188 102 14 chr3 30836641 30837280 -187199878 + LTR28 LTR ERV1 1 695 -325 638 301 77 10 chr3 30838849 30839058 -187198100 - MIR SINE MIR -32 230 8 884 209 0 0 chr3 30839404 30839557 -187197601 - AluJb SINE Alu -15 297 145 222 330 22 11 chr3 30839794 30839885 -187197273 - L2 LINE L2 -9 3263 3172 23 0 0 0 chr3 30840316 30840339 -187196819 + AT_rich Low_complexity Low_complexity 1 23 0 2451 65 0 3 chr3 30841203 30841509 -187195649 + AluY SINE Alu 3 307 -4 3201 230 85 10 chr3 30842259 30843086 -187194072 + L1MC3 LINE L1 6890 7778 -7 253 227 0 40 chr3 30843110 30843185 -187193973 - MER50-int LTR ERV1 -6244 961 890 282 29 0 0 chr3 30843624 30843659 -187193499 + (CA)n Simple_repeat Simple_repeat 2 36 0 299 225 36 18 chr3 30845316 30845427 -187191731 + (TA)n Simple_repeat Simple_repeat 2 114 0 36 23 0 0 chr3 30845508 30845551 -187191607 + AT_rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chr3 30846574 30846611 -187190547 + AT_rich Low_complexity Low_complexity 1 37 0 241 331 73 24 chr3 30847045 30847169 -187189989 - L2 LINE L2 -6 3307 3178 10942 37 4 4 chr3 30847190 30849311 -187187847 - L1PA4 LINE L1 -2 6153 4035 8851 44 2 0 chr3 30849311 30850440 -187186718 + L1PA4 LINE L1 2907 4037 -2109 975 261 78 99 chr3 30850896 30851021 -187186137 + MLT1E LTR MaLR 2 128 -465 2247 72 0 7 chr3 30851021 30851326 -187185832 + AluY SINE Alu 1 303 -8 975 261 78 99 chr3 30851326 30851805 -187185353 + MLT1E LTR MaLR 128 593 0 368 289 109 0 chr3 30852043 30852171 -187184987 - MER117 DNA MER1_type -50 147 6 442 292 35 55 chr3 30852617 30852819 -187184339 + L3b LINE CR1 1191 1388 -195 1948 73 0 35 chr3 30852963 30853222 -187183936 - AluSg SINE Alu -20 290 41 332 242 88 0 chr3 30853729 30853839 -187183319 + MIR3 SINE MIR 61 180 -28 1752 122 90 4 chr3 30854150 30854429 -187182729 + AluSq SINE Alu 1 303 -10 22 35 0 0 chr3 30854535 30854564 -187182594 + AT_rich Low_complexity Low_complexity 1 29 0 2150 104 10 0 chr3 30855080 30855368 -187181790 - AluSg SINE Alu -15 295 5 540 173 245 7 chr3 30856526 30856665 -187180493 - MIR SINE MIR -67 195 24 189 74 0 0 chr3 30857084 30857111 -187180047 + (CA)n Simple_repeat Simple_repeat 2 28 0 26 64 0 0 chr3 30857269 30857316 -187179842 + AT_rich Low_complexity Low_complexity 1 47 0 394 162 120 68 chr3 30857486 30857603 -187179555 + MLT1D LTR MaLR 1 123 -382 2336 75 0 3 chr3 30858061 30858356 -187178802 - AluY SINE Alu -17 294 1 630 223 63 23 chr3 30858803 30858978 -187178180 + MER105 DNA DNA 6 187 -17 21 0 0 0 chr3 30860679 30860700 -187176458 + AT_rich Low_complexity Low_complexity 1 21 0 2195 94 14 0 chr3 30860815 30861112 -187176046 + AluSp SINE Alu 1 301 -12 1075 216 34 41 chr3 30861950 30862354 -187174804 + MLT1F LTR MaLR 6 499 -68 277 228 35 0 chr3 30862356 30862413 -187174745 + MER34 LTR ERV1 484 542 0 275 288 115 0 chr3 30863090 30863229 -187173929 + MER103 DNA DNA 12 166 0 342 318 108 58 chr3 30863282 30863682 -187173476 - L1MC/D LINE L1 -2045 5763 5344 27 0 0 0 chr3 30863795 30863822 -187173336 + AT_rich Low_complexity Low_complexity 1 27 0 2089 239 72 61 chr3 30864135 30864943 -187172215 - L1ME1 LINE L1 -26 6376 5560 445 221 54 20 chr3 30865036 30865185 -187171973 - L1ME1 LINE L1 -997 5385 5232 3247 97 11 0 chr3 30865332 30865794 -187171364 + L1PA13 LINE L1 5696 6162 -1 234 277 69 0 chr3 30865862 30865992 -187171166 - L1ME1 LINE L1 -3795 2587 2449 523 310 133 18 chr3 30866027 30866813 -187170345 - L1ME1 LINE L1 -4153 2410 1374 266 311 88 39 chr3 30866788 30867094 -187170064 - L1ME1 LINE L1 -4862 1510 1190 * 182 354 37 0 chr3 30869236 30869318 -187167840 - MIR SINE MIR -89 173 89 514 269 169 15 chr3 30869528 30869729 -187167429 - MIR SINE MIR -19 243 12 8036 79 5 3 chr3 30869830 30870899 -187166259 - MER11C LTR ERVK 0 1071 1 195 42 0 0 chr3 30871406 30871430 -187165728 + (TA)n Simple_repeat Simple_repeat 1 24 0 26 0 0 0 chr3 30871720 30871746 -187165412 + AT_rich Low_complexity Low_complexity 1 26 0 19952 174 42 17 chr3 30872072 30876804 -187160354 + L1MA3 LINE L1 1 4851 -2714 5509 156 43 24 chr3 30876816 30878323 -187158835 + L1MA3 LINE L1 6190 7724 0 29 0 0 0 chr3 30878323 30878352 -187158806 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr3 30880797 30880826 -187156332 + AT_rich Low_complexity Low_complexity 1 29 0 185 239 0 22 chr3 30880829 30880875 -187156283 + L2 LINE L2 3269 3313 0 25 31 0 0 chr3 30882332 30882364 -187154794 + AT_rich Low_complexity Low_complexity 1 32 0 694 222 69 35 chr3 30882808 30883011 -187154147 - MER58C DNA MER1_type -1 214 5 7409 93 7 19 chr3 30883657 30884727 -187152431 + MER11C LTR ERVK 1 1057 -14 5150 107 7 17 chr3 30884788 30885562 -187151596 + MER11C LTR ERVK 292 1057 -14 21 57 0 0 chr3 30885867 30885902 -187151256 + AT_rich Low_complexity Low_complexity 1 35 0 826 282 146 20 chr3 30886284 30886674 -187150484 + MLT1J1 LTR MaLR 1 439 -7 923 243 40 16 chr3 30886813 30887060 -187150098 + MER74B LTR ERVL 370 622 0 756 218 21 0 chr3 30887060 30887201 -187149957 - MLT1C LTR MaLR -323 144 1 269 275 156 19 chr3 30887663 30888009 -187149149 - L1M4 LINE L1 -1453 4693 4292 21 0 0 0 chr3 30888013 30888034 -187149124 + AT_rich Low_complexity Low_complexity 1 21 0 239 151 38 0 chr3 30888055 30888108 -187149050 + L1MC4 LINE L1 6648 6702 -1340 249 322 35 9 chr3 30888491 30888606 -187148552 - L1MC/D LINE L1 -1921 5887 5770 1110 274 40 3 chr3 30889176 30889501 -187147657 - MER46C DNA MER2_type -1 337 1 1598 191 3 28 chr3 30889656 30889975 -187147183 - AluJo SINE Alu 0 312 2 203 152 0 0 chr3 30890713 30890746 -187146412 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 281 339 8 0 chr3 30890727 30890848 -187146310 + (TA)n Simple_repeat Simple_repeat 1 122 0 374 174 122 20 chr3 30890941 30891039 -187146119 - L1MC5 LINE L1 -109 7852 7745 1904 129 46 0 chr3 30891591 30891871 -187145287 - AluSx SINE Alu -19 293 1 425 259 69 23 chr3 30892202 30892333 -187144825 + MIR SINE MIR 76 212 -50 407 300 67 44 chr3 30892973 30893153 -187144005 + MIR SINE MIR 9 192 -70 184 316 13 0 chr3 30893206 30893282 -187143876 - MIR SINE MIR 0 262 186 340 266 56 63 chr3 30893475 30893618 -187143540 + L2 LINE L2 3159 3300 -13 1359 231 26 102 chr3 30894847 30895375 -187141783 + LTR16C LTR ERVL 1 488 -3 16451 193 60 22 chr3 30895805 30895968 -187141190 - L1M1 LINE L1 -3994 3571 3416 2315 119 0 0 chr3 30895968 30896280 -187140878 - AluSx SINE Alu 0 312 1 16451 193 60 22 chr3 30896280 30899545 -187137613 - L1M1 LINE L1 -4149 3416 11 225 326 44 37 chr3 30899561 30899696 -187137462 - L2 LINE L2 -995 2319 2184 2278 294 159 25 chr3 30899718 30900744 -187136414 - L2 LINE L2 -1096 2218 1029 1514 237 46 3 chr3 30900744 30901094 -187136064 + MLT1A1 LTR MaLR 1 365 0 2278 294 159 25 chr3 30901094 30901183 -187135975 - L2 LINE L2 -2285 1029 953 219 319 0 0 chr3 30901629 30901698 -187135460 + MIR3 SINE MIR 137 205 -3 219 309 0 0 chr3 30902026 30902081 -187135077 + GA-rich Low_complexity Low_complexity 1 55 0 26 0 0 0 chr3 30902222 30902248 -187134910 + AT_rich Low_complexity Low_complexity 1 26 0 443 294 0 0 chr3 30902273 30902399 -187134759 + L1MD2 LINE L1 56 181 -6359 1276 253 119 6 chr3 30902620 30903263 -187133895 + L1MD2 LINE L1 2423 3145 -3395 1122 239 34 34 chr3 30903265 30903606 -187133552 - MSTD LTR MaLR 0 396 29 226 273 9 18 chr3 30903619 30903729 -187133429 + L1MD2 LINE L1 3144 3252 -3288 2066 285 56 29 chr3 30903734 30904742 -187132416 + L1MD2 LINE L1 4487 5537 -1003 1961 141 3 17 chr3 30904742 30905040 -187132118 + AluSx SINE Alu 1 294 -18 2066 285 56 29 chr3 30905040 30905289 -187131869 + L1MD2 LINE L1 5537 5778 -762 2386 170 29 0 chr3 30905290 30905732 -187131426 + L1MC2 LINE L1 5707 6161 -183 280 219 73 0 chr3 30905756 30905838 -187131320 + L1MC2 LINE L1 6246 6333 -11 * 15317 35 20 0 chr3 30905836 30908419 -187128739 + L1PA5 LINE L1 3514 6154 0 1989 210 91 47 chr3 30908463 30909057 -187128101 + L1MD2 LINE L1 5771 6390 -246 745 244 80 36 chr3 30909090 30909364 -187127794 + L1MD2 LINE L1 6455 6740 -13 268 265 32 28 chr3 30910403 30910512 -187126646 - MIR SINE MIR -66 142 72 441 326 87 9 chr3 30911383 30911613 -187125545 + LTR33 LTR ERVL 192 439 -82 396 0 0 0 chr3 30911700 30911744 -187125414 + (TG)n Simple_repeat Simple_repeat 1 44 0 2037 78 0 7 chr3 30911744 30912014 -187125144 - AluY SINE Alu -33 278 11 1779 162 19 16 chr3 30912932 30913241 -187123917 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr3 30913343 30913364 -187123794 + AT_rich Low_complexity Low_complexity 1 21 0 261 0 0 0 chr3 30913651 30913680 -187123478 + (TG)n Simple_repeat Simple_repeat 2 30 0 286 77 0 0 chr3 30913900 30913939 -187123219 + MADE1 DNA Mariner 42 80 0 200 240 67 53 chr3 30913960 30914035 -187123123 - MIR SINE MIR -140 122 47 199 191 0 149 chr3 30915163 30915257 -187121901 + L2 LINE L2 3149 3228 -85 678 347 92 9 chr3 30915840 30916186 -187120972 + MLT1K LTR MaLR 8 382 -206 297 331 67 61 chr3 30916226 30916450 -187120708 - MIR SINE MIR -24 238 9 461 238 210 0 chr3 30917687 30917830 -187119328 + MER5A DNA MER1_type 10 182 -7 746 220 20 0 chr3 30918071 30918221 -187118937 - MER5A DNA MER1_type 0 189 37 249 170 21 0 chr3 30920158 30920205 -187116953 - MLT2D LTR ERVL 0 414 367 967 202 79 9 chr3 30920209 30920437 -187116721 - MLT2D LTR ERVL -167 247 4 2080 143 14 6 chr3 30920493 30920849 -187116309 - L1PA13 LINE L1 -5 6158 5800 2485 191 39 4 chr3 30920992 30921480 -187115678 - MLT1D LTR MaLR 0 505 1 337 321 28 0 chr3 30921542 30921651 -187115507 - MER63A DNA MER1_type 0 210 99 585 208 13 82 chr3 30922023 30922098 -187115060 + MER45A DNA AcHobo 28 88 -1493 1963 125 7 0 chr3 30922098 30922378 -187114780 - AluSx SINE Alu -5 307 26 585 208 13 82 chr3 30922378 30922461 -187114697 + MER45A DNA AcHobo 88 175 -3 570 147 0 0 chr3 30923741 30923843 -187113315 + L1MA4 LINE L1 6197 6298 -2 540 368 36 4 chr3 30925736 30925986 -187111172 + MIR SINE MIR 5 262 0 240 35 0 0 chr3 30927304 30927333 -187109825 + (CA)n Simple_repeat Simple_repeat 2 30 0 205 265 20 0 chr3 30927511 30927560 -187109598 + MIR SINE MIR 56 105 -157 1254 145 185 65 chr3 30928547 30928872 -187108286 + THE1B LTR MaLR 1 364 0 22 56 0 0 chr3 30929036 30929072 -187108086 + AT_rich Low_complexity Low_complexity 1 36 0 243 358 67 8 chr3 30930586 30930706 -187106452 + MIR SINE MIR 94 220 -42 1396 188 58 136 chr3 30930848 30931489 -187105669 + LTR49 LTR ERV1 1 584 -11 691 272 103 13 chr3 30931513 30931829 -187105329 - LTR16A LTR ERVL 0 491 105 954 120 0 0 chr3 30932250 30932383 -187104775 + AluSq/x SINE Alu 2 134 -179 2286 98 3 0 chr3 30932384 30932681 -187104477 + AluSg SINE Alu 2 299 -11 1000 200 73 23 chr3 30932682 30932942 -187104216 + L1MB7 LINE L1 5902 6174 -10 1608 181 45 0 chr3 30932958 30933246 -187103912 + AluSx SINE Alu 2 302 -10 395 156 92 0 chr3 30933580 30933689 -187103469 + AluJo SINE Alu 15 133 -169 2105 108 13 10 chr3 30933744 30934050 -187103108 + AluSg1 SINE Alu 1 307 -2 1148 121 0 17 chr3 30934059 30934233 -187102925 + AluJo SINE Alu 130 300 -12 2334 78 0 3 chr3 30934382 30934676 -187102482 + AluSg1 SINE Alu 1 293 -16 2215 60 46 23 chr3 30934678 30934980 -187102178 + AluY SINE Alu 1 309 -2 384 265 94 0 chr3 30937232 30937349 -187099809 + MER5A DNA MER1_type 9 136 -53 1823 199 50 11 chr3 30937448 30937810 -187099348 + MER21A LTR ERV1 26 401 -530 2492 176 25 8 chr3 30937810 30938288 -187098870 + MER66B LTR ERV1 1 486 0 2336 231 91 9 chr3 30938293 30938844 -187098314 + MER66B-int LTR ERV1 8 603 -6073 2131 168 40 33 chr3 30938844 30939391 -187097767 + MLT2A2 LTR ERVL 1 554 0 1950 177 141 11 chr3 30939391 30939831 -187097327 + MER66B-int LTR ERV1 599 1095 -5581 725 269 6 0 chr3 30939929 30940085 -187097073 + MER66-int LTR ERV1 2946 3102 -3574 4837 189 57 16 chr3 30940180 30941101 -187096057 + MER66-int LTR ERV1 1212 2169 -4507 4255 212 26 21 chr3 30941089 30941948 -187095210 + MER66-int LTR ERV1 2336 3198 -3478 * 2424 149 50 5 chr3 30941968 30942370 -187094788 + MSTA LTR MaLR 1 420 -8 2943 68 12 10 chr3 30942631 30943031 -187094127 - L1PA7 LINE L1 0 6154 5754 1080 228 61 29 chr3 30943482 30943824 -187093334 + L1ME2 LINE L1 5803 6155 -9 195 314 0 0 chr3 30943895 30943946 -187093212 + L2 LINE L2 1851 1901 -1413 270 371 24 0 chr3 30945962 30946086 -187091072 + L1MC/D LINE L1 5450 5576 -2232 21 0 0 0 chr3 30946086 30946107 -187091051 + AT_rich Low_complexity Low_complexity 1 21 0 385 259 68 41 chr3 30946162 30946309 -187090849 + L1MC/D LINE L1 5589 5739 -382 215 225 14 0 chr3 30946435 30946506 -187090652 + (TA)n Simple_repeat Simple_repeat 2 73 0 758 248 0 0 chr3 30946581 30946734 -187090424 - FRAM SINE Alu -16 160 8 4112 205 61 18 chr3 30946796 30947897 -187089261 - L1MB7 LINE L1 -18 6166 4964 1936 132 0 3 chr3 30947897 30948184 -187088974 - AluSc SINE Alu -21 288 3 4112 205 61 18 chr3 30948184 30948930 -187088228 - L1MB7 LINE L1 -1220 4964 4252 1267 201 19 87 chr3 30948987 30949296 -187087862 - AluJo SINE Alu -22 290 3 867 273 18 0 chr3 30949419 30949639 -187087519 + MER58A DNA MER1_type 1 224 0 21 57 0 0 chr3 30949888 30949923 -187087235 + AT_rich Low_complexity Low_complexity 1 35 0 1928 151 3 19 chr3 30950141 30950452 -187086706 + AluJb SINE Alu 3 308 -4 2223 37 0 0 chr3 30952215 30952487 -187084671 + L1PA2 LINE L1 5884 6155 0 1942 215 56 16 chr3 30952612 30953096 -187084062 + L1MD3 LINE L1 7425 7927 -68 1411 195 41 11 chr3 30953159 30953611 -187083547 + L1M4 LINE L1 5016 5482 -702 296 333 184 19 chr3 30953730 30954160 -187082998 - L2 LINE L2 -556 2758 2258 216 0 0 0 chr3 30954613 30954637 -187082521 + (A)n Simple_repeat Simple_repeat 1 24 0 1644 109 97 12 chr3 30957980 30958275 -187078883 - AluSc SINE Alu 0 317 1 368 280 30 38 chr3 30958704 30958836 -187078322 - L2 LINE L2 -1 3271 3141 315 294 63 8 chr3 30958935 30959061 -187078097 + MIR SINE MIR 32 164 -98 826 262 105 94 chr3 30959068 30959641 -187077517 + MLT1G LTR MaLR 10 588 -2 651 262 55 0 chr3 30960932 30961096 -187076062 - MER45A DNA AcHobo -5 173 1 757 155 139 48 chr3 30961897 30962084 -187075074 - MER20 DNA MER1_type 0 219 16 578 331 40 16 chr3 30962134 30962385 -187074773 + MIR SINE MIR 1 257 -5 248 315 0 0 chr3 30962915 30962988 -187074170 - MIR SINE MIR -6 256 184 21 0 0 0 chr3 30964689 30964710 -187072448 + AT_rich Low_complexity Low_complexity 1 21 0 1096 101 132 0 chr3 30964924 30965113 -187072045 - MER44D DNA MER2_type 0 605 337 368 59 59 0 chr3 30965166 30965217 -187071941 + Tigger7 DNA MER2_type 278 331 -402 1215 220 11 34 chr3 30965250 30965518 -187071640 - Tigger7 DNA MER2_type -2224 263 2 228 67 0 0 chr3 30965547 30965577 -187071581 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 2378 148 11 44 chr3 30966201 30966660 -187070498 + MLT2A1 LTR ERVL 1 444 0 4263 213 108 31 chr3 30968963 30970271 -187066887 - Charlie1a DNA MER1_type 0 1455 48 2319 65 0 28 chr3 30970568 30970889 -187066269 + L1PA8 LINE L1 5858 6169 -3 258 32 0 0 chr3 30971453 30971484 -187065674 + (TCCA)n Simple_repeat Simple_repeat 3 33 0 927 278 92 41 chr3 30971866 30972355 -187064803 + LTR33 LTR ERVL 6 519 -2 26 30 0 0 chr3 30972393 30972426 -187064732 + AT_rich Low_complexity Low_complexity 1 33 0 242 204 31 122 chr3 30973024 30973122 -187064036 + MIR SINE MIR 100 188 -74 631 320 57 16 chr3 30973201 30973573 -187063585 + L2 LINE L2 2365 2751 -563 998 311 87 28 chr3 30973609 30974034 -187063124 + L2 LINE L2 2864 3313 0 920 195 33 14 chr3 30974071 30974286 -187062872 + MER20 DNA MER1_type 1 219 0 182 207 0 103 chr3 30975052 30975110 -187062048 + L2 LINE L2 3262 3313 0 576 285 111 19 chr3 30975370 30975640 -187061518 - L2 LINE L2 -5 3308 3014 404 352 93 30 chr3 30976089 30976325 -187060833 - MIR SINE MIR -6 256 6 21 36 0 0 chr3 30978764 30978792 -187058366 + AT_rich Low_complexity Low_complexity 1 28 0 632 281 99 5 chr3 30978792 30978984 -187058174 - MER58A DNA MER1_type -1 223 14 510 310 83 14 chr3 30979127 30979343 -187057815 + MIR SINE MIR 31 261 -1 198 103 0 0 chr3 30979431 30979460 -187057698 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 205 365 111 0 chr3 30979477 30979603 -187057555 + L2 LINE L2 3132 3271 -1 209 262 33 0 chr3 30981447 30981508 -187055650 + (TTCA)n Simple_repeat Simple_repeat 3 65 0 258 363 66 25 chr3 30981837 30982114 -187055044 + L2 LINE L2 2757 3050 -222 1627 243 133 0 chr3 30982191 30982590 -187054568 + Tigger5 DNA MER2_type 1 452 -1871 292 191 95 0 chr3 30982594 30982657 -187054501 + Tigger5 DNA MER2_type 2240 2308 -15 230 254 0 16 chr3 30983397 30983460 -187053698 + A-rich Low_complexity Low_complexity 2 63 0 669 255 98 25 chr3 30983723 30983927 -187053231 + MER20 DNA MER1_type 1 219 0 744 169 174 23 chr3 30983938 30984157 -187053001 - LTR37A LTR ERV1 0 426 175 2214 112 0 0 chr3 30986132 30986427 -187050731 + AluSx SINE Alu 5 299 -13 29 47 0 0 chr3 30986474 30986517 -187050641 + AT_rich Low_complexity Low_complexity 1 43 0 316 350 88 81 chr3 30987907 30988227 -187048931 - L2 LINE L2 -56 3216 2895 181 336 62 76 chr3 30988282 30988493 -187048665 + L2 LINE L2 3020 3227 -45 2497 125 0 0 chr3 30989440 30989807 -187047351 - L1PB1 LINE L1 -3 6148 5782 11097 186 32 17 chr3 30989526 30989829 -187047329 - L1PA16 LINE L1 -99 6067 5770 1014 157 0 0 chr3 30989829 30990007 -187047151 + (TA)n Simple_repeat Simple_repeat 2 179 0 11097 186 32 17 chr3 30990007 30993085 -187044073 - L1PA16 LINE L1 -396 5770 2682 3093 132 91 1 chr3 30993084 30993780 -187043378 + L1PA16 LINE L1 2656 3415 -3447 * 657 306 34 17 chr3 30993933 30994168 -187042990 + MIR SINE MIR 22 260 -2 2097 114 13 7 chr3 30994562 30994868 -187042290 - AluY SINE Alu 0 311 4 1462 67 0 0 chr3 30995916 30996109 -187041049 - L1PA4 LINE L1 -3 6152 5960 23 33 0 0 chr3 30996572 30996602 -187040556 + AT_rich Low_complexity Low_complexity 1 30 0 6698 268 57 15 chr3 30996674 31000596 -187036562 - L1 LINE L1 -2889 3843 2 226 250 113 24 chr3 31001099 31001223 -187035935 - L1M3d LINE L1 -5753 138 4 694 251 5 21 chr3 31001333 31001524 -187035634 - MLT1A2 LTR MaLR -183 191 4 22 0 0 0 chr3 31001770 31001792 -187035366 + AT_rich Low_complexity Low_complexity 1 22 0 352 332 48 24 chr3 31002137 31002345 -187034813 - L1M4 LINE L1 -2301 3845 3633 666 202 42 72 chr3 31004085 31004278 -187032880 + MER5A DNA MER1_type 3 189 0 272 366 31 26 chr3 31004984 31005175 -187031983 + MIR SINE MIR 23 214 -48 22 35 0 0 chr3 31006126 31006155 -187031003 + AT_rich Low_complexity Low_complexity 1 29 0 437 188 10 59 chr3 31006390 31006491 -187030667 - Zaphod DNA AcHobo -2 4029 3934 521 269 50 19 chr3 31006550 31006710 -187030448 - MLT1G1 LTR MaLR -2 593 429 355 278 35 77 chr3 31006790 31006959 -187030199 - LTR16B LTR ERVL -12 452 291 1068 189 95 10 chr3 31057474 31057784 -186979374 - MER33 DNA MER1_type 0 324 1 368 299 132 36 chr3 31058193 31058527 -186978631 - L1M4 LINE L1 -1456 4690 4325 296 265 120 0 chr3 31058729 31058846 -186978312 + MLT1J LTR MaLR 7 137 -374 330 261 32 96 chr3 31059113 31059270 -186977888 - L1MEd LINE L1 -5956 163 17 2200 118 7 0 chr3 31059403 31059707 -186977451 - AluSq SINE Alu -5 308 3 5353 152 40 13 chr3 31060082 31061114 -186976044 + L1MA8 LINE L1 5226 6285 -6 546 370 20 24 chr3 31061366 31061823 -186975335 - L1ME3A LINE L1 -208 5962 5508 2123 114 3 0 chr3 31062007 31062297 -186974861 + AluSc SINE Alu 1 291 -18 2670 16 0 7 chr3 31062318 31062622 -186974536 + AluY SINE Alu 1 302 -9 251 272 37 0 chr3 31062800 31062881 -186974277 - HAL1b LINE L1 -817 531 448 319 365 14 7 chr3 31062891 31063036 -186974122 - HAL1 LINE L1 -998 1509 1364 1275 182 83 10 chr3 31063208 31063510 -186973648 - MER33 DNA MER1_type 0 324 1 23 0 0 0 chr3 31063981 31064004 -186973154 + AT_rich Low_complexity Low_complexity 1 23 0 234 0 0 0 chr3 31064198 31064224 -186972934 + (A)n Simple_repeat Simple_repeat 1 26 0 1877 158 0 7 chr3 31064537 31064840 -186972318 + AluSx SINE Alu 1 301 -11 368 306 56 35 chr3 31066140 31066284 -186970874 - L2 LINE L2 -25 3288 3142 1055 236 122 46 chr3 31066342 31066736 -186970422 + LTR16A LTR ERVL 25 448 -2 388 360 63 13 chr3 31067071 31067310 -186969848 - MIR SINE MIR -1 261 11 21 36 0 0 chr3 31067355 31067383 -186969775 + AT_rich Low_complexity Low_complexity 1 28 0 286 400 17 22 chr3 31068703 31068883 -186968275 - MER115 DNA AcHobo -498 195 17 216 158 0 0 chr3 31069665 31069703 -186967455 + (TG)n Simple_repeat Simple_repeat 2 39 0 403 182 48 0 chr3 31069717 31069882 -186967276 + (TA)n Simple_repeat Simple_repeat 1 173 0 4751 143 54 23 chr3 31070805 31071732 -186965426 + L1 LINE L1 4167 5122 -1024 1405 176 96 53 chr3 31071910 31072084 -186965074 + MLT1B LTR MaLR 1 166 -224 1861 118 9 60 chr3 31072084 31072399 -186964759 + AluSp SINE Alu 1 299 -14 222 37 0 0 chr3 31072399 31072426 -186964732 + (GGGA)n Simple_repeat Simple_repeat 4 30 0 1405 176 96 53 chr3 31072426 31072624 -186964534 + MLT1B LTR MaLR 165 390 0 259 292 125 25 chr3 31072811 31072931 -186964227 + L2 LINE L2 3139 3270 -2 295 329 67 18 chr3 31074607 31074771 -186962387 - MIR SINE MIR -89 173 2 369 85 0 0 chr3 31074798 31074857 -186962301 + L1MD2 LINE L1 6300 6358 -1 1358 272 160 19 chr3 31077274 31077863 -186959295 + L2 LINE L2 535 1206 -2108 483 260 81 108 chr3 31077880 31078103 -186959055 + MIR SINE MIR 46 262 0 203 205 77 0 chr3 31078233 31078311 -186958847 + (TTAAA)n Simple_repeat Simple_repeat 2 85 0 766 204 0 25 chr3 31078554 31078711 -186958447 - MER3 DNA MER1_type -56 153 1 21 36 0 0 chr3 31078720 31078748 -186958410 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 31079353 31079381 -186957777 + AT_rich Low_complexity Low_complexity 1 28 0 1525 231 25 41 chr3 31080221 31080615 -186956543 - MLT1I LTR MaLR -21 388 1 26 0 0 0 chr3 31083086 31083112 -186954046 + AT_rich Low_complexity Low_complexity 1 26 0 397 304 101 14 chr3 31084967 31085174 -186951984 + MIR SINE MIR 1 225 -37 290 299 82 13 chr3 31085245 31085486 -186951672 - L1MC/D LINE L1 -450 5671 5535 22 70 0 0 chr3 31085686 31085729 -186951429 + AT_rich Low_complexity Low_complexity 1 43 0 7470 23 6 4 chr3 31087233 31088234 -186948924 + L1PA4 LINE L1 5154 6155 0 449 270 34 39 chr3 31088579 31088757 -186948401 - MLT1K LTR MaLR -36 552 376 670 214 11 93 chr3 31088867 31088943 -186948215 - MER106B DNA MER1_type 0 236 155 2733 115 14 14 chr3 31088943 31089370 -186947788 - L1PB1 LINE L1 -1 6150 5724 670 214 11 93 chr3 31089370 31089546 -186947612 - MER106B DNA MER1_type -81 155 1 201 353 141 18 chr3 31090039 31090365 -186946793 - L2 LINE L2 -887 2427 2062 1750 200 59 122 chr3 31090481 31091196 -186945962 + LTR8A LTR ERV1 34 703 -24 421 335 79 0 chr3 31091397 31091549 -186945609 + MIR SINE MIR 30 193 -69 1189 183 173 145 chr3 31091622 31091818 -186945340 + LTR48 LTR ERV1 1 190 -454 1648 122 4 0 chr3 31091818 31092048 -186945110 + AluSp SINE Alu 5 235 -78 1189 183 173 145 chr3 31092048 31092548 -186944610 + LTR48 LTR ERV1 190 573 -71 1862 148 20 10 chr3 31092561 31092859 -186944299 + AluSx SINE Alu 1 301 -11 36 91 0 0 chr3 31094159 31094258 -186942900 + AT_rich Low_complexity Low_complexity 1 99 0 1675 253 100 60 chr3 31094808 31095751 -186941407 + Zaphod DNA AcHobo 9 988 -3043 180 0 0 0 chr3 31095995 31096015 -186941143 + (T)n Simple_repeat Simple_repeat 1 20 0 27 0 0 0 chr3 31096186 31096213 -186940945 + AT_rich Low_complexity Low_complexity 1 27 0 2290 86 0 3 chr3 31096495 31096786 -186940372 - AluY SINE Alu -21 290 1 346 384 87 5 chr3 31097381 31097600 -186939558 - HAL1b LINE L1 -732 616 380 26 0 0 0 chr3 31098752 31098778 -186938380 + AT_rich Low_complexity Low_complexity 1 26 0 378 305 123 17 chr3 31098828 31099064 -186938094 - MIR SINE MIR -1 261 1 330 260 110 20 chr3 31099554 31099846 -186937312 + L1M4 LINE L1 4359 4676 -1470 839 226 58 58 chr3 31099972 31100233 -186936925 + MIR SINE MIR 1 261 -1 1779 163 20 0 chr3 31100606 31100901 -186936257 + AluSx SINE Alu 4 304 -8 499 191 9 19 chr3 31101855 31101960 -186935198 - L1ME3A LINE L1 -39 6131 6028 310 316 125 7 chr3 31103119 31103271 -186933887 - L1MDb LINE L1 -3983 2604 2435 23 68 0 0 chr3 31105391 31105435 -186931723 + AT_rich Low_complexity Low_complexity 1 44 0 1896 237 76 28 chr3 31105902 31106713 -186930445 - L1MDb LINE L1 -4474 1932 1072 399 270 226 15 chr3 31107049 31107323 -186929835 - L1MEc LINE L1 -4002 2394 2063 343 256 104 24 chr3 31107536 31107700 -186929458 - HAL1 LINE L1 -828 1679 1503 227 260 44 44 chr3 31107712 31107893 -186929265 - L1MEc LINE L1 -4934 1462 1282 350 277 62 18 chr3 31107984 31108096 -186929062 - L2 LINE L2 -5 3308 3192 2364 205 114 2 chr3 31108125 31108677 -186928481 + MER90 LTR ERV1 1 614 0 28 0 0 0 chr3 31108793 31108821 -186928337 + AT_rich Low_complexity Low_complexity 1 28 0 1866 114 0 0 chr3 31109808 31110054 -186927104 - AluSx SINE Alu -66 246 1 264 308 84 28 chr3 31110424 31110531 -186926627 - L2 LINE L2 -5 3267 3155 1986 141 0 0 chr3 31111421 31111704 -186925454 + AluSx SINE Alu 5 287 -25 841 256 19 5 chr3 31112309 31112516 -186924642 + MER58A DNA MER1_type 11 220 -4 319 300 0 0 chr3 31112758 31112838 -186924320 - MER5A DNA MER1_type 0 189 110 261 0 0 0 chr3 31113110 31113139 -186924019 + (TG)n Simple_repeat Simple_repeat 1 29 0 278 271 171 16 chr3 31113162 31113291 -186923867 + MIR SINE MIR 6 154 -108 1611 134 0 109 chr3 31113333 31113653 -186923505 - AluJb SINE Alu -16 286 2 217 323 143 31 chr3 31113803 31113964 -186923194 - MER5A DNA MER1_type -9 180 2 218 95 24 0 chr3 31115597 31115639 -186921519 + (TAGA)n Simple_repeat Simple_repeat 1 43 0 1332 273 31 23 chr3 31116377 31116766 -186920392 - MLT1I LTR MaLR 0 409 18 248 323 139 6 chr3 31116775 31116933 -186920225 + L2 LINE L2 3133 3311 -2 276 81 32 16 chr3 31117880 31117942 -186919216 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 26 0 0 0 chr3 31119344 31119370 -186917788 + AT_rich Low_complexity Low_complexity 1 26 0 269 341 81 8 chr3 31120549 31120672 -186916486 + MIR SINE MIR 16 147 -61 32 26 0 0 chr3 31120851 31120890 -186916268 + AT_rich Low_complexity Low_complexity 1 39 0 263 227 57 0 chr3 31121497 31121585 -186915573 - L1ME3A LINE L1 0 6170 6078 259 330 55 9 chr3 31121700 31121809 -186915349 - L2 LINE L2 -2 3311 3198 417 244 24 8 chr3 31122629 31122756 -186914402 - L1ME3A LINE L1 0 6170 6042 274 273 68 0 chr3 31122804 31122936 -186914222 - L1ME3A LINE L1 -219 5951 5811 4509 175 47 18 chr3 31123023 31124091 -186913067 + L1MB3 LINE L1 5072 6166 -17 26 0 0 0 chr3 31124863 31124889 -186912269 + AT_rich Low_complexity Low_complexity 1 26 0 343 279 39 8 chr3 31125128 31125257 -186911901 + L2 LINE L2 3177 3309 -4 22 70 0 0 chr3 31125323 31125366 -186911792 + AT_rich Low_complexity Low_complexity 1 43 0 1386 242 102 19 chr3 31125525 31125955 -186911203 + MLT1D LTR MaLR 40 505 0 702 282 81 8 chr3 31125976 31126210 -186910948 - MIR SINE MIR -11 251 1 1607 222 32 22 chr3 31127305 31127675 -186909483 - MLT1A2 LTR MaLR 0 374 1 277 340 41 0 chr3 31129502 31129599 -186907559 + MIR SINE MIR 76 176 -86 186 167 0 0 chr3 31130760 31130796 -186906362 + GA-rich Low_complexity Low_complexity 2 37 0 466 252 218 0 chr3 31132254 31132401 -186904757 - MER5A DNA MER1_type -2 187 9 355 261 34 0 chr3 31134042 31134130 -186903028 + MIR SINE MIR 98 188 -74 397 301 32 8 chr3 31134160 31134283 -186902875 + L2 LINE L2 3139 3264 -8 22 56 0 0 chr3 31134283 31134319 -186902839 + AT_rich Low_complexity Low_complexity 1 36 0 2758 31 0 0 chr3 31134605 31134923 -186902235 - AluYb8 SINE Alu 0 318 1 745 264 77 20 chr3 31134980 31135226 -186901932 - LTR16A LTR ERVL -6 444 185 346 167 0 0 chr3 31135473 31135533 -186901625 + MIR SINE MIR 129 188 -74 219 339 33 61 chr3 31135672 31135852 -186901306 - L2 LINE L2 -219 3053 2879 861 238 16 11 chr3 31136077 31136262 -186900896 + MER5A DNA MER1_type 3 188 -1 213 65 0 0 chr3 31136624 31136655 -186900503 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 428 154 0 13 chr3 31137069 31137147 -186900011 + MADE1 DNA Mariner 4 80 0 330 26 0 0 chr3 31137266 31137305 -186899853 + (TG)n Simple_repeat Simple_repeat 2 40 0 1005 171 11 11 chr3 31138032 31138388 -186898770 + GA-rich Low_complexity Low_complexity 1 356 0 247 239 45 34 chr3 31138469 31138557 -186898601 - MIR SINE MIR -108 154 66 803 232 27 5 chr3 31138582 31138767 -186898391 - MER5A DNA MER1_type 0 189 1 180 313 15 15 chr3 31138776 31138843 -186898315 + L2 LINE L2 3243 3309 -4 402 278 81 64 chr3 31139020 31139395 -186897763 - LTR16C LTR ERVL -48 409 13 324 0 0 0 chr3 31139477 31139513 -186897645 + (TG)n Simple_repeat Simple_repeat 2 37 0 338 205 0 0 chr3 31139513 31139591 -186897567 + MER116 DNA Mariner 1 78 -2 389 315 98 39 chr3 31140083 31140493 -186896665 - MLT1L LTR MaLR -4 611 178 344 169 0 12 chr3 31141192 31141275 -186895883 + GA-rich Low_complexity Low_complexity 2 83 0 24 0 0 0 chr3 31141733 31141757 -186895401 + AT_rich Low_complexity Low_complexity 1 24 0 5161 95 59 2 chr3 31142578 31143380 -186893778 + L1MA1 LINE L1 5451 6297 -5 203 350 206 0 chr3 31144803 31144900 -186892258 - MER91A DNA MER1_type -51 145 29 279 133 0 0 chr3 31145221 31145266 -186891892 + (TCCCC)n Simple_repeat Simple_repeat 5 49 0 1725 155 43 11 chr3 31145283 31145561 -186891597 - AluSx SINE Alu -25 287 1 803 200 54 32 chr3 31146043 31146070 -186891088 + MER5A DNA MER1_type 1 26 -163 219 69 0 0 chr3 31146070 31146099 -186891059 + (CCA)n Simple_repeat Simple_repeat 3 31 0 803 200 54 32 chr3 31146099 31146256 -186890902 + MER5A DNA MER1_type 26 189 0 2585 23 0 0 chr3 31146459 31146812 -186890346 + L1PA4 LINE L1 5852 6204 0 601 139 9 28 chr3 31146870 31146978 -186890180 + FLAM_C SINE Alu 31 136 -7 430 296 266 23 chr3 31147173 31147477 -186889681 + L3 LINE CR1 1195 1572 -5 474 291 81 17 chr3 31147508 31147680 -186889478 - MIR SINE MIR -1 261 79 547 213 41 0 chr3 31148346 31148468 -186888690 - L1MB4 LINE L1 -4 6176 6050 489 319 126 6 chr3 31149212 31149394 -186887764 - MIR3 SINE MIR -2 206 3 493 322 74 5 chr3 31149604 31149806 -186887352 + MIR SINE MIR 12 227 -35 209 364 74 12 chr3 31153778 31153940 -186883218 + L2 LINE L2 2890 3061 -211 10587 40 4 0 chr3 31154100 31156156 -186881002 - L1PA4 LINE L1 -3 6152 4089 189 276 138 52 chr3 31156189 31156305 -186880853 + L2 LINE L2 2342 2467 -847 633 316 62 32 chr3 31156372 31156742 -186880416 + LTR16B LTR ERVL 82 462 -2 4523 212 24 10 chr3 31156869 31157435 -186879723 - L1MB8 LINE L1 -5 6173 5617 2086 122 0 13 chr3 31157435 31157747 -186879411 - AluSc SINE Alu -1 308 1 4523 212 24 10 chr3 31157747 31159078 -186878080 - L1MB8 LINE L1 -561 5617 4247 191 382 113 16 chr3 31159080 31159266 -186877892 + L2 LINE L2 2605 2808 -506 345 226 0 0 chr3 31159903 31159987 -186877171 + (TA)n Simple_repeat Simple_repeat 1 84 0 2342 97 3 0 chr3 31159987 31160285 -186876873 - AluSp SINE Alu -14 299 1 195 407 68 0 chr3 31160376 31160494 -186876664 - L2 LINE L2 -220 3052 2927 305 195 305 42 chr3 31160933 31161051 -186876107 + MER5A DNA MER1_type 41 189 0 254 108 0 0 chr3 31161658 31161695 -186875463 - MADE1 DNA Mariner -43 37 1 28 29 0 0 chr3 31162628 31162663 -186874495 + AT_rich Low_complexity Low_complexity 1 35 0 1531 120 0 5 chr3 31163488 31163705 -186873453 - AluSx SINE Alu -96 216 1 377 275 126 84 chr3 31163784 31164093 -186873065 - L1MC4 LINE L1 -1043 6999 6678 198 344 53 53 chr3 31165640 31165771 -186871387 + MIR SINE MIR 26 156 -106 596 124 62 0 chr3 31166149 31166246 -186870912 - MLT1F1 LTR MaLR 0 567 465 424 229 19 9 chr3 31166811 31166916 -186870242 - LTR16A LTR ERVL -4 446 341 580 174 17 0 chr3 31167443 31167558 -186869600 - L1MA9 LINE L1 -22 6290 6174 23 0 0 0 chr3 31167587 31167610 -186869548 + AT_rich Low_complexity Low_complexity 1 23 0 29223 119 19 59 chr3 31167632 31173824 -186863334 - L1PA8 LINE L1 -226 5946 12 200 333 27 0 chr3 31174380 31174455 -186862703 - MIR SINE MIR -108 154 78 200 333 27 0 chr3 31175035 31175110 -186862048 - MIR SINE MIR -108 154 78 197 250 0 0 chr3 31176171 31176211 -186860947 + MIR SINE MIR 93 132 -130 7269 114 123 117 chr3 31176263 31177949 -186859209 + pTR5 LTR ERV1 743 2438 0 287 184 0 0 chr3 31179244 31179293 -186857865 - MER21A LTR ERV1 -870 61 13 279 79 0 0 chr3 31179301 31179339 -186857819 + (TG)n Simple_repeat Simple_repeat 2 39 0 3999 186 71 38 chr3 31179362 31180231 -186856927 + MER21A LTR ERV1 32 929 -2 1020 154 6 0 chr3 31180687 31180856 -186856302 - MER3 DNA MER1_type -82 127 5 1531 303 37 17 chr3 31182330 31182946 -186854212 - L2 LINE L2 -187 3126 2501 263 172 0 17 chr3 31183589 31183647 -186853511 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 24 32 0 0 chr3 31183666 31183697 -186853461 + AT_rich Low_complexity Low_complexity 1 31 0 1097 285 201 20 chr3 31184761 31186013 -186851145 + L1MC2 LINE L1 37 1554 -4842 4902 259 84 32 chr3 31186044 31188248 -186848910 + L1MC2 LINE L1 2364 4673 -1542 305 288 211 36 chr3 31191334 31191671 -186845487 - HAL1b LINE L1 -572 776 381 277 346 0 0 chr3 31192336 31192417 -186844741 - L2 LINE L2 -668 2646 2566 4296 14 0 0 chr3 31193296 31193832 -186843326 + L1PA2 LINE L1 5660 6195 0 186 43 0 0 chr3 31194085 31194108 -186843050 + (GA)n Simple_repeat Simple_repeat 2 24 0 4266 182 30 15 chr3 31194108 31195015 -186842143 + L1MC2 LINE L1 5494 6413 0 22 0 0 0 chr3 31195132 31195154 -186842004 + AT_rich Low_complexity Low_complexity 1 22 0 851 134 0 0 chr3 31196108 31196220 -186840938 + AluSq/x SINE Alu 3 114 -199 201 108 0 0 chr3 31196301 31196338 -186840820 + (A)n Simple_repeat Simple_repeat 1 37 0 1118 112 56 17 chr3 31196342 31196521 -186840637 + AluSg/x SINE Alu 126 311 -1 655 327 28 5 chr3 31196574 31196785 -186840373 - MIR SINE MIR -44 218 3 4523 161 24 4 chr3 31197151 31198023 -186839135 - L1MA8 LINE L1 -207 6084 5197 220 240 39 19 chr3 31198156 31198260 -186838898 + (TAGA)n Simple_repeat Simple_repeat 4 109 0 618 183 142 22 chr3 31198282 31198439 -186838719 - MIR SINE MIR -62 146 5 872 221 22 36 chr3 31199001 31199223 -186837935 + MER20 DNA MER1_type 1 219 0 3344 223 93 39 chr3 31200146 31201271 -186835887 + L1MC4 LINE L1 6857 8042 0 2300 126 16 22 chr3 31201280 31201646 -186835512 + THE1B LTR MaLR 1 364 0 251 261 52 60 chr3 31201872 31202006 -186835152 + MIR SINE MIR 86 218 -44 253 312 11 26 chr3 31202389 31202575 -186834583 - MIR SINE MIR -12 250 3 420 332 65 17 chr3 31202926 31203158 -186834000 + MIR SINE MIR 18 260 -2 240 86 0 0 chr3 31203843 31203878 -186833280 + (TTA)n Simple_repeat Simple_repeat 2 36 0 21 57 0 0 chr3 31204284 31204319 -186832839 + AT_rich Low_complexity Low_complexity 1 35 0 744 147 0 0 chr3 31204389 31204525 -186832633 + (GGAA)n Simple_repeat Simple_repeat 4 139 0 7436 40 1 0 chr3 31205075 31205985 -186831173 - L1PA4 LINE L1 -3064 3318 2405 18696 38 0 0 chr3 31205985 31207240 -186829918 + L1PA4 LINE L1 3312 4566 -1825 2083 85 39 39 chr3 31207240 31207547 -186829611 - AluY SINE Alu -4 307 1 18696 38 0 0 chr3 31207547 31209381 -186827777 + L1PA4 LINE L1 4565 6391 0 7436 40 1 0 chr3 31209381 31209395 -186827763 - L1M4c LINE L1 -3977 2405 2393 233 250 18 0 chr3 31209576 31209632 -186827526 - Charlie8 DNA MER1_type -1001 1416 1360 1847 129 43 13 chr3 31210080 31210382 -186826776 + AluJo SINE Alu 1 311 -1 323 313 23 15 chr3 31210384 31210515 -186826643 - LTR67 LTR ERVL -12 545 414 1835 290 118 12 chr3 31210552 31211401 -186825757 + HAL1 LINE L1 25 963 -1544 1996 272 142 25 chr3 31211411 31212711 -186824447 + HAL1 LINE L1 1055 2507 0 699 253 28 11 chr3 31212864 31213042 -186824116 + MER5A DNA MER1_type 1 181 -8 636 282 17 6 chr3 31213068 31213249 -186823909 - MER5A DNA MER1_type 0 189 7 1762 217 64 14 chr3 31213249 31213747 -186823411 - Charlie1b DNA MER1_type 0 523 1 2425 43 4 0 chr3 31215366 31215670 -186821488 - AluY SINE Alu 0 307 3 231 250 0 0 chr3 31217498 31217566 -186819592 + GA-rich Low_complexity Low_complexity 3 70 0 191 289 111 0 chr3 31218209 31218299 -186818859 + MER5A DNA MER1_type 7 106 -83 1739 138 91 50 chr3 31218740 31219123 -186818035 - L1MA9 LINE L1 -9 6303 5905 * 3629 171 23 18 chr3 31219120 31220353 -186816805 + L1MA9 LINE L1 4627 5869 -443 24 32 0 0 chr3 31220398 31220429 -186816729 + AT_rich Low_complexity Low_complexity 1 31 0 554 228 8 120 chr3 31220539 31220645 -186816513 - MER58C DNA MER1_type -2206 214 148 679 179 17 0 chr3 31220645 31220762 -186816396 + FLAM_A SINE Alu 1 119 -14 554 228 8 120 chr3 31220762 31220896 -186816262 - MER58C DNA MER1_type -2272 148 1 544 268 16 66 chr3 31223480 31223723 -186813435 - L2 LINE L2 -8 3305 3075 475 272 175 26 chr3 31223840 31224068 -186813090 + MIR SINE MIR 1 262 0 510 272 61 7 chr3 31225364 31225511 -186811647 + MLT1I LTR MaLR 47 201 -208 216 256 0 0 chr3 31226227 31226270 -186810888 - MIR3 SINE MIR -21 187 145 1985 137 11 0 chr3 31226634 31226919 -186810239 + AluSq SINE Alu 1 288 -25 268 279 84 63 chr3 31227004 31227234 -186809924 - MIR SINE MIR 0 262 30 245 321 28 46 chr3 31228941 31229050 -186808108 + MIR SINE MIR 156 262 0 1923 76 4 0 chr3 31229091 31229341 -186807817 + L1PA7 LINE L1 5888 6138 -16 264 421 103 0 chr3 31229738 31229971 -186807187 - L2 LINE L2 -253 3060 2804 355 240 0 56 chr3 31230297 31230422 -186806736 + L1MC5 LINE L1 7808 7925 -36 387 291 172 0 chr3 31230720 31230871 -186806287 - MER5A DNA MER1_type -6 183 7 1524 211 77 32 chr3 31231417 31231796 -186805362 - MSTD LTR MaLR 0 396 1 2402 88 0 3 chr3 31232418 31232726 -186804432 - AluSg SINE Alu -1 309 3 1960 107 3 17 chr3 31233055 31233445 -186803713 + AluSp SINE Alu 1 386 0 754 247 209 30 chr3 31233496 31233893 -186803265 + MLT1K LTR MaLR 121 588 0 1814 152 7 7 chr3 31234211 31234507 -186802651 - AluSx SINE Alu -16 296 1 23 54 0 0 chr3 31234591 31234628 -186802530 + AT_rich Low_complexity Low_complexity 1 37 0 297 243 106 25 chr3 31235093 31235291 -186801867 + MIR SINE MIR 15 225 -37 815 281 132 18 chr3 31235320 31235654 -186801504 + LTR16A LTR ERVL 65 436 -14 21 0 0 0 chr3 31236001 31236022 -186801136 + AT_rich Low_complexity Low_complexity 1 21 0 210 250 0 0 chr3 31236041 31236085 -186801073 + MIR3 SINE MIR 164 207 -1 315 343 6 40 chr3 31236369 31236544 -186800614 - MIR3 SINE MIR -26 182 14 22 35 0 0 chr3 31237129 31237158 -186800000 + AT_rich Low_complexity Low_complexity 1 29 0 462 339 21 43 chr3 31238140 31238373 -186798785 - MIR SINE MIR -32 230 3 246 32 0 0 chr3 31238526 31238557 -186798601 + (CA)n Simple_repeat Simple_repeat 2 32 0 2163 200 43 49 chr3 31238714 31239192 -186797966 + MLT2B1 LTR ERVL 1 477 -43 441 0 0 0 chr3 31239192 31239241 -186797917 + (CA)n Simple_repeat Simple_repeat 2 50 0 2163 200 43 49 chr3 31239241 31239273 -186797885 + MLT2B1 LTR ERVL 477 508 -12 498 26 40 0 chr3 31239508 31239584 -186797574 + (TG)n Simple_repeat Simple_repeat 2 80 0 684 222 0 0 chr3 31239584 31239701 -186797457 - FLAM_A SINE Alu -15 118 2 635 290 55 15 chr3 31240304 31240504 -186796654 + MIR SINE MIR 23 230 -32 248 200 32 63 chr3 31241694 31241731 -186795427 - L1MC4 LINE L1 -1298 6744 6707 315 0 0 0 chr3 31241731 31241766 -186795392 + (TG)n Simple_repeat Simple_repeat 2 36 0 248 200 32 63 chr3 31241766 31241823 -186795335 - L1MC4 LINE L1 -1335 6707 6653 10018 35 0 0 chr3 31242056 31244031 -186793127 + L1PA4 LINE L1 4173 6148 -7 23 0 0 0 chr3 31247310 31247333 -186789825 + AT_rich Low_complexity Low_complexity 1 23 0 410 36 18 0 chr3 31248672 31248728 -186788430 + (TG)n Simple_repeat Simple_repeat 2 58 0 487 256 35 74 chr3 31249123 31249326 -186787832 + HAL1 LINE L1 1 195 -2312 265 358 30 8 chr3 31249662 31249796 -186787362 - MIR3 SINE MIR -49 159 23 309 256 111 11 chr3 31250620 31250710 -186786448 + MIR SINE MIR 43 141 -67 203 364 34 0 chr3 31250874 31250962 -186786196 + MIR SINE MIR 53 143 -65 * 414 246 9 18 chr3 31250959 31251069 -186786089 - L2 LINE L2 0 3313 3205 223 282 118 27 chr3 31251073 31251183 -186785975 + MIR SINE MIR 143 262 0 296 318 99 10 chr3 31251219 31251363 -186785795 - MIR3 SINE MIR -63 145 10 627 233 83 75 chr3 31251375 31251482 -186785676 + MER97a DNA MER1_type? 1 106 -788 2799 146 34 6 chr3 31251482 31251981 -186785177 + L1MB3 LINE L1 5669 6181 -2 627 233 83 75 chr3 31251981 31252126 -186785032 + MER97a DNA MER1_type? 106 255 -639 27 0 0 0 chr3 31252169 31252196 -186784962 + AT_rich Low_complexity Low_complexity 1 27 0 1266 224 95 53 chr3 31252459 31252631 -186784527 + MER97c DNA MER1_type? 238 401 -689 2057 141 13 0 chr3 31252631 31252935 -186784223 + AluSx SINE Alu 1 308 -4 1266 224 95 53 chr3 31252935 31253073 -186784085 + MER97c DNA MER1_type? 401 532 -558 2007 133 3 7 chr3 31253073 31253366 -186783792 - AluSx SINE Alu -12 300 9 1266 224 95 53 chr3 31253366 31253487 -186783671 + MER97c DNA MER1_type? 532 688 -402 261 267 0 44 chr3 31253501 31253591 -186783567 + MER97b DNA MER1_type? 965 1050 -3 1889 162 0 0 chr3 31253735 31254019 -186783139 - AluSx SINE Alu -26 286 3 812 162 14 0 chr3 31254473 31254615 -186782543 - L1MA10 LINE L1 -4 6330 6187 2278 64 0 0 chr3 31256130 31256426 -186780732 - L1PA8 LINE L1 -2 6170 5875 243 252 103 28 chr3 31256564 31256671 -186780487 - MLT1H LTR MaLR -146 403 289 1172 209 26 50 chr3 31256718 31257253 -186779905 - MLT1E2 LTR MaLR -3 623 6 254 277 72 12 chr3 31257371 31257454 -186779704 - MLT1H LTR MaLR -461 88 1 554 245 104 66 chr3 31257669 31257881 -186779277 - MIR SINE MIR 0 262 43 22 35 0 0 chr3 31257886 31257915 -186779243 + AT_rich Low_complexity Low_complexity 1 29 0 1631 243 84 2 chr3 31258378 31258843 -186778315 - MLT1D LTR MaLR 0 505 3 2030 127 43 32 chr3 31258933 31259304 -186777854 + THE1C LTR MaLR 1 375 0 357 267 67 67 chr3 31259447 31259642 -186777516 - L1ME LINE L1 -669 5452 5258 1219 252 105 6 chr3 31259753 31260114 -186777044 - MLT1J2 LTR MaLR -53 397 1 274 154 0 0 chr3 31260701 31260740 -186776418 - AluS SINE Alu -246 57 19 819 117 0 0 chr3 31260740 31260851 -186776307 - AluSq/x SINE Alu -202 111 1 482 227 9 0 chr3 31260940 31261050 -186776108 - MLT2F LTR ERVL -14 649 539 609 273 6 19 chr3 31261129 31261290 -186775868 + MLT1F LTR MaLR 1 159 -383 27 29 0 0 chr3 31261432 31261466 -186775692 + AT_rich Low_complexity Low_complexity 1 34 0 2405 66 10 10 chr3 31261512 31261817 -186775341 + AluY SINE Alu 1 305 -6 21 0 0 0 chr3 31261976 31261997 -186775161 + AT_rich Low_complexity Low_complexity 1 21 0 314 316 62 63 chr3 31262095 31262735 -186774423 - L1ME LINE L1 -1497 4649 4010 1613 147 96 34 chr3 31262735 31263088 -186774070 + THE1C LTR MaLR 1 375 0 314 316 62 63 chr3 31263088 31263305 -186773853 - L1ME LINE L1 -2136 4010 3791 1775 166 0 17 chr3 31263305 31263595 -186773563 - AluJb SINE Alu -22 290 6 314 316 62 63 chr3 31263595 31263655 -186773503 - L1ME LINE L1 -2355 3791 3732 342 250 39 0 chr3 31263855 31263959 -186773199 - Charlie1 DNA MER1_type -5 2756 2649 263 287 37 37 chr3 31263959 31264123 -186773035 - L1ME LINE L1 -3344 2802 2639 415 310 34 25 chr3 31265636 31265959 -186771199 + L1ME3A LINE L1 5034 5359 -787 631 151 43 50 chr3 31266085 31266224 -186770934 + L1MB3 LINE L1 6042 6179 -4 604 252 128 46 chr3 31266243 31266369 -186770789 + L1ME3A LINE L1 5368 5482 -688 2260 116 3 0 chr3 31266369 31266679 -186770479 + AluSp SINE Alu 1 311 -2 604 252 128 46 chr3 31266679 31266834 -186770324 + L1ME3A LINE L1 5482 5672 -498 258 227 0 0 chr3 31266879 31266954 -186770204 + (CATATA)n Simple_repeat Simple_repeat 3 77 0 779 215 185 39 chr3 31267002 31267332 -186769826 + L1ME3A LINE L1 5675 6052 -118 561 303 23 36 chr3 31267353 31267574 -186769584 - LTR16C LTR ERVL 0 491 274 200 122 0 24 chr3 31267598 31267639 -186769519 + (GGA)n Simple_repeat Simple_repeat 1 40 0 272 277 125 0 chr3 31267817 31267929 -186769229 + L1ME3A LINE L1 6040 6165 -5 285 405 47 7 chr3 31268231 31268379 -186768779 - L2 LINE L2 -4 3268 3115 1625 171 3 35 chr3 31268408 31268694 -186768464 + AluJb SINE Alu 3 279 -33 186 143 0 0 chr3 31268694 31268729 -186768429 + (GGGAA)n Simple_repeat Simple_repeat 1 35 0 221 340 78 70 chr3 31268865 31269236 -186767922 - L2 LINE L2 -352 2962 2589 228 35 0 0 chr3 31269550 31269579 -186767579 + (CA)n Simple_repeat Simple_repeat 2 30 0 7430 32 1 4 chr3 31269898 31270950 -186766208 + L1PA4 LINE L1 5106 6154 -1 507 225 18 9 chr3 31271002 31271113 -186766045 - L2 LINE L2 -7 3306 3195 587 341 149 10 chr3 31271147 31271630 -186765528 + L2 LINE L2 2698 3261 -11 348 280 72 0 chr3 31272865 31272990 -186764168 + MIR3 SINE MIR 61 194 -14 350 266 24 77 chr3 31274407 31274576 -186762582 + L2 LINE L2 3094 3253 -60 2748 173 60 17 chr3 31275201 31275892 -186761266 + L1MB3 LINE L1 5122 5840 -343 244 284 30 76 chr3 31275914 31276111 -186761047 - L1ME LINE L1 -335 5786 5599 1360 326 118 44 chr3 31276869 31277483 -186759675 - L2 LINE L2 -243 3070 2503 12882 135 53 52 chr3 31277483 31279610 -186757548 + Tigger1 DNA MER2_type 1 2134 -284 215 31 31 0 chr3 31279610 31279642 -186757516 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 12882 135 53 52 chr3 31279642 31279928 -186757230 + Tigger1 DNA MER2_type 2134 2418 0 1360 326 118 44 chr3 31279928 31280577 -186756581 - L2 LINE L2 -810 2503 1706 814 229 55 27 chr3 31280601 31280784 -186756374 - MER5A DNA MER1_type 0 189 2 297 351 99 0 chr3 31280791 31280962 -186756196 - L2 LINE L2 -1635 1679 1492 394 297 103 26 chr3 31282118 31282273 -186754885 + MLT1I LTR MaLR 47 213 -196 611 204 171 7 chr3 31284011 31284163 -186752995 + MER5A DNA MER1_type 12 188 -1 244 143 0 0 chr3 31284325 31284360 -186752798 - tRNA-Gly-GGG tRNA tRNA -38 36 2 281 253 27 13 chr3 31284569 31284644 -186752514 - L2 LINE L2 0 3272 3197 21 0 0 0 chr3 31285237 31285258 -186751900 + AT_rich Low_complexity Low_complexity 1 21 0 377 311 28 0 chr3 31285273 31285379 -186751779 - MIR SINE MIR -122 140 32 24 53 0 0 chr3 31285434 31285472 -186751686 + AT_rich Low_complexity Low_complexity 1 38 0 273 261 122 9 chr3 31285637 31285752 -186751406 - L2 LINE L2 0 3272 3145 305 250 0 0 chr3 31285756 31285824 -186751334 + MER58 DNA MER1_type 2352 2419 -1 435 259 222 0 chr3 31285825 31285960 -186751198 - L2 LINE L2 -1026 2288 2124 271 383 57 5 chr3 31285979 31286172 -186750986 + MIR SINE MIR 12 214 -48 796 264 71 17 chr3 31286190 31286429 -186750729 + MIR SINE MIR 11 262 0 201 359 41 74 chr3 31287232 31287502 -186749656 + L2 LINE L2 2967 3227 -45 17441 182 28 34 chr3 31287547 31287912 -186749246 + L1MA2 LINE L1 16 382 -7183 1744 92 8 0 chr3 31287912 31288152 -186749006 - L1PA7 LINE L1 -3 6151 5910 17441 182 28 34 chr3 31288152 31291176 -186745982 + L1MA2 LINE L1 382 3423 -4142 186 43 0 0 chr3 31291176 31291199 -186745959 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 17441 182 28 34 chr3 31291199 31291758 -186745400 + L1MA2 LINE L1 3423 3984 -3581 462 101 0 0 chr3 31291758 31291827 -186745331 + (TA)n Simple_repeat Simple_repeat 1 69 0 17441 182 28 34 chr3 31291827 31294279 -186742879 + L1MA2 LINE L1 3984 6381 -1184 2801 125 15 5 chr3 31294279 31294688 -186742470 + MLT2A2 LTR ERVL 1 413 -40 313 283 0 22 chr3 31294723 31294815 -186742343 - L1MC4 LINE L1 -1339 6703 6614 238 222 22 0 chr3 31294817 31294907 -186742251 + (TA)n Simple_repeat Simple_repeat 2 93 0 3995 117 33 3 chr3 31294909 31295516 -186741642 + HERVL-A2 LTR ERVL 1640 2264 -3390 587 40 0 0 chr3 31295518 31295593 -186741565 + HERVL-A2 LTR ERVL 5580 5654 0 1877 105 50 4 chr3 31295593 31295930 -186741228 + MLT2A2 LTR ERVL 1 321 -132 540 0 0 0 chr3 31295930 31295990 -186741168 + (TA)n Simple_repeat Simple_repeat 1 60 0 198 0 0 0 chr3 31295989 31296011 -186741147 + (CA)n Simple_repeat Simple_repeat 2 23 0 * 1877 105 50 4 chr3 31295990 31296051 -186741107 + MLT2A2 LTR ERVL 321 453 0 1558 201 0 21 chr3 31296053 31296432 -186740726 + L1MA2 LINE L1 6379 6749 -816 2844 119 119 31 chr3 31296434 31296732 -186740426 + L1PB2 LINE L1 5585 5855 -296 2251 143 12 6 chr3 31296732 31297067 -186740091 - MER1B DNA MER1_type 0 337 1 2844 119 119 31 chr3 31297067 31297289 -186739869 + L1PB2 LINE L1 5855 6151 0 6117 113 20 6 chr3 31297302 31297331 -186739827 + L1MA2 LINE L1 6744 6771 -952 1471 135 0 9 chr3 31297331 31297546 -186739612 - AluSg/x SINE Alu -15 295 83 6117 113 20 6 chr3 31297546 31298483 -186738675 + L1MA2 LINE L1 6771 7723 0 2175 77 3 3 chr3 31299220 31299518 -186737640 + L1PA6 LINE L1 5857 6154 0 473 330 92 37 chr3 31301051 31301493 -186735665 + L1ME LINE L1 5293 5762 -400 405 281 176 6 chr3 31301819 31302076 -186735082 - L1MC/D LINE L1 -760 5386 5186 982 235 50 4 chr3 31302118 31302378 -186734780 + L1ME3A LINE L1 5527 5798 -372 717 288 34 48 chr3 31302490 31302844 -186734314 + L1ME3A LINE L1 5818 6166 -4 24 53 0 0 chr3 31303045 31303083 -186734075 + AT_rich Low_complexity Low_complexity 1 38 0 1457 194 68 21 chr3 31303461 31303801 -186733357 - MLT1A1 LTR MaLR 0 365 10 198 143 0 0 chr3 31305696 31305731 -186731427 + (TC)n Simple_repeat Simple_repeat 2 36 0 207 224 20 0 chr3 31305737 31305786 -186731372 - MIR SINE MIR -25 237 188 6855 71 14 0 chr3 31306159 31307195 -186729963 - L1PA7 LINE L1 0 6154 5116 4501 138 72 4 chr3 31307617 31308384 -186728774 + L1PA16 LINE L1 5340 6158 -8 839 199 30 6 chr3 31308497 31308663 -186728495 + MER3 DNA MER1_type 1 123 -86 381 43 0 0 chr3 31308850 31308897 -186728261 + (TA)n Simple_repeat Simple_repeat 2 48 0 31 0 0 0 chr3 31308957 31308988 -186728170 + AT_rich Low_complexity Low_complexity 1 31 0 1028 187 112 22 chr3 31309067 31309334 -186727824 - L1MB8 LINE L1 0 6178 5888 2429 53 0 10 chr3 31309347 31309648 -186727510 - AluY SINE Alu -13 298 1 22 70 0 0 chr3 31309766 31309809 -186727349 + AT_rich Low_complexity Low_complexity 1 43 0 6939 36 4 1 chr3 31310814 31311657 -186725501 + L1PA5 LINE L1 5309 6153 -1 570 228 0 0 chr3 31311779 31311902 -186725256 + L1MB5 LINE L1 6038 6160 -14 483 268 88 35 chr3 31312895 31313156 -186724002 + MLT1L LTR MaLR 119 393 -222 913 310 113 20 chr3 31313193 31313583 -186723575 - LTR16A LTR ERVL -22 428 3 503 312 90 0 chr3 31313591 31313780 -186723378 + MLT1L LTR MaLR 410 615 0 501 311 15 0 chr3 31314198 31314330 -186722828 + MIR3 SINE MIR 72 205 -3 1544 240 31 9 chr3 31314892 31315313 -186721845 + L1ME3 LINE L1 5338 5767 -397 1371 238 12 19 chr3 31315318 31315638 -186721520 + L1ME3 LINE L1 5845 6162 0 516 276 48 0 chr3 31315899 31316044 -186721114 - MIR SINE MIR -74 188 37 491 31 15 0 chr3 31316346 31316411 -186720747 + (CA)n Simple_repeat Simple_repeat 1 66 0 26 0 0 0 chr3 31316723 31316749 -186720409 + AT_rich Low_complexity Low_complexity 1 26 0 1281 183 25 108 chr3 31317096 31317494 -186719664 - MLT1A1 LTR MaLR 0 365 1 191 273 45 0 chr3 31317679 31317745 -186719413 + MIR SINE MIR 66 134 -128 2373 91 39 35 chr3 31317790 31318196 -186718962 + L1MA3 LINE L1 5896 6303 -2 242 296 23 0 chr3 31318797 31318885 -186718273 - L1MC4 LINE L1 -1339 6703 6614 476 287 0 6 chr3 31318994 31319175 -186717983 + (TA)n Simple_repeat Simple_repeat 1 180 0 256 217 22 43 chr3 31319214 31319306 -186717852 - L1MC4 LINE L1 -1339 6703 6614 254 303 0 0 chr3 31319327 31319416 -186717742 + L1MC4 LINE L1 6615 6703 -1339 * 255 294 0 0 chr3 31319350 31319435 -186717723 - L1MC4 LINE L1 -1339 6703 6619 309 169 22 11 chr3 31321074 31321163 -186715995 + (TA)n Simple_repeat Simple_repeat 1 90 0 207 0 0 0 chr3 31321276 31321299 -186715859 + (T)n Simple_repeat Simple_repeat 1 23 0 1840 161 27 21 chr3 31321572 31321945 -186715213 + THE1C LTR MaLR 1 375 0 298 244 72 54 chr3 31322000 31322135 -186715023 + MLT1I LTR MaLR 35 182 -285 183 339 119 0 chr3 31323240 31323358 -186713800 - MIR3 SINE MIR -7 201 70 361 251 46 109 chr3 31323711 31323950 -186713208 + L1ME4a LINE L1 5632 5855 -266 1945 169 0 10 chr3 31324073 31324386 -186712772 - AluJb SINE Alu -2 310 1 2525 58 0 0 chr3 31324595 31324905 -186712253 + AluY SINE Alu 1 310 -1 1989 195 35 53 chr3 31325068 31325580 -186711578 + MLT1D LTR MaLR 3 505 0 1935 99 22 4 chr3 31325985 31326258 -186710900 + AluSx SINE Alu 1 278 -34 2148 97 3 17 chr3 31326998 31327323 -186709835 - AluSx SINE Alu 0 312 1 1554 185 37 85 chr3 31327446 31327927 -186709231 - LTR37B LTR ERV1 -5 463 6 258 222 194 0 chr3 31328258 31328330 -186708828 - MIR SINE MIR -69 193 108 27 0 0 0 chr3 31328757 31328784 -186708374 + AT_rich Low_complexity Low_complexity 1 27 0 415 369 98 19 chr3 31329116 31329485 -186707673 + L2 LINE L2 2871 3268 -4 364 338 153 0 chr3 31330999 31331156 -186706002 - MER5A DNA MER1_type 0 189 9 556 206 94 25 chr3 31333208 31333368 -186703790 - MLT1D LTR MaLR -327 178 8 24 32 0 0 chr3 31333906 31333937 -186703221 + AT_rich Low_complexity Low_complexity 1 31 0 273 195 0 49 chr3 31334230 31334312 -186702846 - MLT2F LTR ERVL -2 661 584 269 263 38 12 chr3 31334479 31334559 -186702599 + MIR SINE MIR 49 130 -132 1011 221 46 36 chr3 31334577 31334884 -186702274 - MLT2C1 LTR ERVL -87 310 1 308 253 101 10 chr3 31336466 31336565 -186700593 + MLT1I LTR MaLR 281 388 -21 694 241 208 45 chr3 31336906 31337008 -186700150 + MLT1G LTR MaLR 43 127 -463 1783 193 0 3 chr3 31337008 31337314 -186699844 + AluJb SINE Alu 1 305 -7 694 241 208 45 chr3 31337314 31337660 -186699498 + MLT1G LTR MaLR 127 588 -2 592 246 43 7 chr3 31337807 31337918 -186699240 + Tigger5 DNA MER2_type 32 150 -2173 276 30 0 0 chr3 31337918 31337951 -186699207 + (TC)n Simple_repeat Simple_repeat 1 33 0 592 246 43 7 chr3 31337951 31337977 -186699181 + Tigger5 DNA MER2_type 150 174 -2149 429 219 118 17 chr3 31338001 31338120 -186699038 + MER21B LTR ERV1 368 498 -365 1461 128 0 9 chr3 31338121 31338347 -186698811 + Tigger5 DNA MER2_type 2098 2321 -2 421 326 28 7 chr3 31338349 31338493 -186698665 - MIR SINE MIR -101 161 15 1310 186 71 59 chr3 31339281 31339673 -186697485 + L1MC4 LINE L1 7505 7901 -141 269 327 83 16 chr3 31339672 31339926 -186697232 - L1M4 LINE L1 -1143 5003 4733 * 355 245 24 4 chr3 31339976 31340228 -186696930 + (TA)n Simple_repeat Simple_repeat 1 257 0 305 295 120 83 chr3 31340239 31340502 -186696656 - L1M4 LINE L1 -2792 3354 3102 5234 45 6 3 chr3 31340502 31341146 -186696012 + L1PA7 LINE L1 5507 6152 -2 305 295 120 83 chr3 31341146 31341884 -186695274 - L1M4 LINE L1 -3044 3102 2316 4237 167 27 1 chr3 31342336 31343035 -186694123 - MER44D DNA MER2_type -16 589 1 21 0 0 0 chr3 31343437 31343458 -186693700 + AT_rich Low_complexity Low_complexity 1 21 0 441 345 48 33 chr3 31343463 31343799 -186693359 - HAL1 LINE L1 -878 1629 1289 233 254 0 16 chr3 31346041 31346104 -186691054 + MIR SINE MIR 200 261 -1 242 132 19 0 chr3 31346143 31346196 -186690962 + GA-rich Low_complexity Low_complexity 4 57 0 228 167 0 0 chr3 31346686 31346734 -186690424 + GA-rich Low_complexity Low_complexity 1 48 0 243 157 0 0 chr3 31346941 31346992 -186690166 + (TAA)n Simple_repeat Simple_repeat 3 53 0 438 298 21 21 chr3 31347087 31347228 -186689930 - MIR SINE MIR -116 146 6 375 287 17 29 chr3 31348013 31348187 -186688971 + GA-rich Low_complexity Low_complexity 3 174 0 1105 63 0 0 chr3 31348780 31348922 -186688236 - AluY SINE Alu -1 310 169 282 178 55 41 chr3 31349366 31349439 -186687719 - MIR SINE MIR -98 164 91 183 306 0 20 chr3 31349593 31349642 -186687516 - L2 LINE L2 -211 3061 3014 1794 127 102 0 chr3 31349734 31350017 -186687141 + AluSx SINE Alu 1 312 0 584 282 66 11 chr3 31350575 31350848 -186686310 + AluSq SINE Alu 21 308 -5 330 275 183 0 chr3 31351720 31351851 -186685307 - MLT2E LTR ERVL -5 623 469 460 298 151 24 chr3 31351961 31352213 -186684945 - MLT2E LTR ERVL -310 318 35 869 260 9 22 chr3 31352235 31352458 -186684700 + MER58A DNA MER1_type 2 221 -3 196 298 18 0 chr3 31352552 31352609 -186684549 + L2 LINE L2 3207 3264 -8 508 344 13 0 chr3 31352876 31353033 -186684125 - L2 LINE L2 -261 3052 2894 10345 129 31 19 chr3 31353246 31355812 -186681346 - L1PA10 LINE L1 -3 6480 3891 12242 203 11 29 chr3 31355812 31358811 -186678347 - L1PA10 LINE L1 -2790 3671 714 225 0 0 0 chr3 31358811 31358836 -186678322 + (CTGTG)n Simple_repeat Simple_repeat 1 25 0 12242 203 11 29 chr3 31358836 31358935 -186678223 - L1PA10 LINE L1 -5747 714 615 828 290 34 0 chr3 31359697 31359939 -186677219 - MIR SINE MIR -6 256 8 713 249 103 33 chr3 31360251 31360552 -186676606 - L1ME4a LINE L1 -252 5869 5548 459 282 42 7 chr3 31361006 31361148 -186676010 - Charlie8 DNA MER1_type -2186 231 85 1273 218 24 85 chr3 31362247 31362669 -186674489 - MSTD LTR MaLR 0 396 1 201 268 175 0 chr3 31363434 31363531 -186673627 + L2 LINE L2 2576 2689 -625 2941 176 95 3 chr3 31363545 31364175 -186672983 - L1MB5 LINE L1 -1 6173 5486 754 327 55 3 chr3 31364180 31364540 -186672618 + L2 LINE L2 2683 3066 -247 3727 154 22 29 chr3 31364922 31365649 -186671509 - L1MB2 LINE L1 0 6171 5450 497 268 70 47 chr3 31365971 31366184 -186670974 + L2 LINE L2 3091 3308 -5 204 188 0 0 chr3 31366328 31366392 -186670766 + (TA)n Simple_repeat Simple_repeat 2 65 0 186 279 72 81 chr3 31366434 31366545 -186670613 + L2 LINE L2 3146 3255 -58 1610 162 1 2 chr3 31366566 31367041 -186670117 - L1P5 LINE L1 -646 5505 5031 3244 93 32 2 chr3 31367046 31367517 -186669641 - L1PA13 LINE L1 -4 6159 5675 1605 50 0 0 chr3 31367533 31367733 -186669425 - L1PA4 LINE L1 0 6155 5956 2450 81 52 8 chr3 31367734 31368115 -186669043 - L1PA13 LINE L1 -499 5664 5267 * 5925 78 6 6 chr3 31368104 31368908 -186668250 - L1PA7 LINE L1 -2 6152 5349 30830 125 15 40 chr3 31369008 31374376 -186662782 - L1PA7 LINE L1 -910 5236 2 3053 211 4 44 chr3 31374371 31375170 -186661988 - L1 LINE L1 -1101 5045 4279 * 7278 142 11 15 chr3 31376082 31378469 -186658689 - L1MA1 LINE L1 0 6302 3928 2490 205 2 0 chr3 31378672 31379188 -186657970 - L1 LINE L1 -819 5327 4811 2133 178 3 18 chr3 31379188 31379531 -186657627 - MER1B DNA MER1_type 0 339 2 773 150 0 0 chr3 31379531 31379664 -186657494 - L1 LINE L1 -1328 4818 4686 644 177 0 0 chr3 31379651 31379775 -186657383 - L1 LINE L1 -2180 3966 3843 * 1919 228 6 29 chr3 31379864 31380377 -186656781 - L1 LINE L1 -2275 3871 3371 6023 171 31 1 chr3 31380394 31380814 -186656344 + L1PB1 LINE L1 3970 4376 -1804 234 0 0 0 chr3 31380814 31380840 -186656318 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 6023 171 31 1 chr3 31380840 31382188 -186654970 + L1PB1 LINE L1 4376 5811 -369 180 77 0 0 chr3 31382188 31382214 -186654944 + (TA)n Simple_repeat Simple_repeat 2 27 0 6023 171 31 1 chr3 31382214 31382596 -186654562 + L1PB1 LINE L1 5811 6180 0 15073 175 32 5 chr3 31382596 31384775 -186652383 - L1 LINE L1 -1436 6129 4011 2291 119 31 19 chr3 31384775 31385135 -186652023 - THE1B LTR MaLR 0 364 1 15073 175 32 5 chr3 31385135 31388011 -186649147 - L1 LINE L1 -3554 4011 943 1227 236 43 28 chr3 31388011 31388337 -186648821 + MLT1C LTR MaLR 134 464 -3 5371 239 26 42 chr3 31388339 31390171 -186646987 + L1MC1 LINE L1 2908 4710 -1436 313 192 199 19 chr3 31390271 31390427 -186646731 + L1ME1 LINE L1 1645 1828 -4712 1755 226 53 24 chr3 31390433 31390924 -186646234 - MLT1D LTR MaLR 0 505 1 5319 170 52 4 chr3 31390963 31392060 -186645098 + L1MC1 LINE L1 5186 6333 0 276 200 31 0 chr3 31392054 31392119 -186645039 + L1ME1 LINE L1 1861 1927 -4613 * 837 260 44 12 chr3 31392102 31392421 -186644737 + L1ME1 LINE L1 4541 4869 -1671 3063 235 69 10 chr3 31392426 31393877 -186643281 + L1ME1 LINE L1 5009 6541 -19 2272 83 0 3 chr3 31394006 31394295 -186642863 - AluSg1 SINE Alu -21 288 1 194 312 73 83 chr3 31394327 31394410 -186642748 + L2 LINE L2 2692 2774 -540 329 93 19 0 chr3 31394410 31394464 -186642694 + (CA)n Simple_repeat Simple_repeat 2 56 0 194 312 73 83 chr3 31394464 31394598 -186642560 + L2 LINE L2 2774 2907 -407 198 0 0 0 chr3 31394643 31394665 -186642493 + (T)n Simple_repeat Simple_repeat 1 22 0 247 261 207 27 chr3 31394753 31394864 -186642294 + L2 LINE L2 3183 3313 0 985 196 168 9 chr3 31395017 31395445 -186641713 - Charlie1 DNA MER1_type 0 2761 1 343 259 69 52 chr3 31395694 31395868 -186641290 + MER5B DNA MER1_type 2 178 0 834 220 12 6 chr3 31396104 31396277 -186640881 + MER45A DNA AcHobo 1 174 -4 470 282 82 18 chr3 31396757 31396927 -186640231 - LTR33 LTR ERVL -315 206 26 995 354 22 22 chr3 31397251 31397743 -186639415 - ERVL LTR ERVL -522 5242 4751 282 284 0 0 chr3 31397749 31397823 -186639335 + (TATATG)n Simple_repeat Simple_repeat 2 75 0 432 184 71 158 chr3 31398697 31399159 -186637999 - L1MC5 LINE L1 -62 7899 7478 516 221 16 16 chr3 31399165 31399292 -186637866 - L1MA4 LINE L1 -39 6261 6135 823 243 104 47 chr3 31399313 31399716 -186637442 - L1MC5 LINE L1 -465 7496 7071 588 297 53 42 chr3 31399728 31399991 -186637167 - L1MC4a LINE L1 -1068 6740 6475 438 250 52 0 chr3 31400011 31400147 -186637011 + LTR67 LTR ERVL 408 550 -7 214 338 14 0 chr3 31401331 31401405 -186635753 - L2 LINE L2 -8 3305 3231 4027 134 16 9 chr3 31402908 31403577 -186633581 + L1MC1 LINE L1 5659 6332 -1 1311 122 81 0 chr3 31403615 31403836 -186633322 + MSTA LTR MaLR 2 240 -188 358 171 0 49 chr3 31403834 31403916 -186633242 + AluJb SINE Alu 57 134 -168 * 21470 153 29 16 chr3 31403929 31405278 -186631880 - L1 LINE L1 -3484 4081 2752 186 43 0 0 chr3 31405278 31405301 -186631857 + (TC)n Simple_repeat Simple_repeat 2 24 0 21470 153 29 16 chr3 31405301 31407962 -186629196 - L1 LINE L1 -4813 2752 19 295 310 88 32 chr3 31409368 31409584 -186627574 - MER102b DNA MER1_type -28 313 86 218 322 33 22 chr3 31410120 31410210 -186626948 + MER5A DNA MER1_type 77 167 -22 * 290 279 13 13 chr3 31410139 31410218 -186626940 - MER5A DNA MER1_type -85 104 26 24 32 0 0 chr3 31410689 31410720 -186626438 + AT_rich Low_complexity Low_complexity 1 31 0 3613 263 40 57 chr3 31410884 31412400 -186624758 - L2 LINE L2 0 3313 1826 315 341 46 17 chr3 31413396 31413569 -186623589 - MIR SINE MIR -20 242 65 366 299 119 55 chr3 31413876 31414261 -186622897 + L2 LINE L2 98 507 -2807 301 355 9 0 chr3 31414392 31414499 -186622659 + L2 LINE L2 550 657 -2657 1290 203 126 54 chr3 31415644 31415993 -186621165 - MLT1B LTR MaLR -16 374 1 1005 173 23 45 chr3 31416164 31416384 -186620774 + MER20 DNA MER1_type 4 218 -1 382 327 149 30 chr3 31416431 31416767 -186620391 + L2 LINE L2 2236 2611 -703 333 234 43 0 chr3 31416943 31416984 -186620174 + MER94 DNA DNA 9 47 -87 438 79 0 0 chr3 31416984 31417047 -186620111 + (TG)n Simple_repeat Simple_repeat 1 63 0 333 234 43 0 chr3 31417047 31417099 -186620059 + MER94 DNA DNA 47 106 -28 3872 126 62 16 chr3 31417334 31418017 -186619141 + L1MA2 LINE L1 5546 6259 -45 15469 36 1 0 chr3 31418017 31420653 -186616505 + L1PA3 LINE L1 3516 6155 0 189 0 0 0 chr3 31420659 31420680 -186616478 + (CA)n Simple_repeat Simple_repeat 2 22 0 1389 74 0 0 chr3 31420681 31420857 -186616301 + MER1A DNA MER1_type 252 427 -102 263 140 18 0 chr3 31420876 31420933 -186616225 + L1MA3 LINE L1 6246 6303 -2 335 132 0 0 chr3 31421625 31421678 -186615480 - MLT2B1 LTR ERVL -3 517 465 2351 191 4 43 chr3 31421758 31422225 -186614933 - MLT2B1 LTR ERVL -71 449 1 31 26 0 0 chr3 31423899 31423937 -186613221 + AT_rich Low_complexity Low_complexity 1 38 0 5274 128 41 6 chr3 31424287 31425236 -186611922 - L1PB3 LINE L1 -7 6147 5164 2336 222 63 3 chr3 31425237 31425805 -186611353 - MER97a DNA MER1_type? -46 848 247 2537 291 20 11 chr3 31425815 31426659 -186610499 + L1MEc LINE L1 37 888 -5508 1915 157 0 0 chr3 31426660 31426941 -186610217 + AluJo SINE Alu 1 281 -31 212 0 36 0 chr3 31426946 31426974 -186610184 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1148 280 9 26 chr3 31426979 31427322 -186609836 - L1M4 LINE L1 -5515 1027 691 323 300 0 22 chr3 31427323 31427413 -186609745 - L1MEc LINE L1 -4608 1788 1701 267 31 0 0 chr3 31427482 31427514 -186609644 + (TA)n Simple_repeat Simple_repeat 1 32 0 * 270 0 0 0 chr3 31427513 31427543 -186609615 + (GA)n Simple_repeat Simple_repeat 2 31 0 1977 115 4 0 chr3 31427543 31427813 -186609345 - AluSx SINE Alu -39 273 3 1934 150 7 3 chr3 31427831 31428138 -186609020 + AluSx SINE Alu 1 308 -4 336 308 15 15 chr3 31428445 31428578 -186608580 + C-rich Low_complexity Low_complexity 1 133 0 1314 256 75 10 chr3 31428757 31429288 -186607870 + L1MB7 LINE L1 1210 1772 -4833 749 210 6 6 chr3 31429279 31429455 -186607703 + L1MB7 LINE L1 2874 3049 -3595 * 2275 213 106 67 chr3 31429452 31430930 -186606228 + L1MEc LINE L1 930 3556 -2659 2202 244 75 11 chr3 31430948 31431705 -186605453 + L1MEc LINE L1 4227 5032 -1183 324 183 0 14 chr3 31431722 31431793 -186605365 + L1MEc LINE L1 5157 5226 -989 1863 252 35 13 chr3 31431990 31432609 -186604549 + L1MB7 LINE L1 4832 5464 -1180 3788 205 38 37 chr3 31432623 31433565 -186603593 + L1MB7 LINE L1 5586 6525 -157 985 190 57 0 chr3 31433565 31433776 -186603382 + L1MA9 LINE L1 6085 6307 -5 3788 205 38 37 chr3 31433776 31433912 -186603246 + L1MB7 LINE L1 6525 6659 -23 362 271 114 12 chr3 31434067 31434322 -186602836 + L1M4 LINE L1 3439 3719 -2427 1541 208 41 36 chr3 31434331 31434750 -186602408 - LTR52 LTR ERVL 0 421 1 741 299 103 30 chr3 31434886 31436035 -186601123 + L1M4 LINE L1 3774 5026 -1120 619 301 29 6 chr3 31436114 31436287 -186600871 - LTR16A LTR ERVL -242 208 32 21 36 0 0 chr3 31438198 31438226 -186598932 + AT_rich Low_complexity Low_complexity 1 28 0 5172 154 31 2 chr3 31438574 31439444 -186597714 - L1P LINE L1 -5240 906 12 230 189 0 0 chr3 31439493 31439530 -186597628 - MER6 DNA MER2_type -12 853 817 9862 83 23 30 chr3 31439727 31441227 -186595931 + L1P LINE L1 893 2381 -3765 593 88 0 0 chr3 31441328 31441408 -186595750 + AluY SINE Alu 214 293 -18 826 145 0 0 chr3 31441409 31441526 -186595632 - AluJo/FLAM SINE Alu -185 117 1 384 218 145 8 chr3 31441534 31441658 -186595500 + L1MDa LINE L1 1798 1938 -4602 2093 77 4 0 chr3 31441663 31441924 -186595234 + AluY SINE Alu 6 267 -44 22894 73 3 2 chr3 31442172 31446054 -186591104 + L1PA6 LINE L1 2250 6145 -9 603 310 17 6 chr3 31446453 31446627 -186590531 + LTR16A LTR ERVL 32 207 -243 2855 155 63 15 chr3 31446970 31447493 -186589665 + MER44D DNA MER2_type 1 603 -2 948 201 11 0 chr3 31448013 31448197 -186588961 - MER5A DNA MER1_type 0 189 4 218 281 125 10 chr3 31448453 31448549 -186588609 + L2 LINE L2 2387 2493 -821 23 54 0 0 chr3 31449070 31449107 -186588051 + AT_rich Low_complexity Low_complexity 1 37 0 462 234 97 77 chr3 31449607 31449855 -186587303 + MER112 DNA MER1_type 1 253 -3 478 240 74 8 chr3 31450427 31450548 -186586610 - L2 LINE L2 0 3313 3185 370 194 0 0 chr3 31451032 31451104 -186586054 - HAL1b LINE L1 -742 606 535 * 2916 59 4 3 chr3 31451097 31451621 -186585537 - L1P2 LINE L1 -630 5524 5000 4240 53 4 0 chr3 31451621 31452163 -186584995 + L1P2 LINE L1 4435 4978 -1168 603 211 54 12 chr3 31452863 31453029 -186584129 - L1MA10 LINE L1 -1 6333 6161 431 149 0 0 chr3 31453038 31453105 -186584053 + L1MA7 LINE L1 5831 5897 -394 2637 43 3 0 chr3 31454930 31455235 -186581923 - AluY SINE Alu -5 306 1 212 298 95 0 chr3 31455350 31455434 -186581724 - L3 LINE CR1 -119 1458 1367 401 209 29 38 chr3 31455738 31455843 -186581315 + MIR SINE MIR 141 244 -18 913 197 36 0 chr3 31456214 31456407 -186580751 - MER3 DNA MER1_type -8 201 2 203 330 143 9 chr3 31456815 31456927 -186580231 + MIR SINE MIR 82 208 -54 187 301 97 11 chr3 31457029 31457122 -186580036 + L3 LINE CR1 1379 1479 -98 27 0 0 0 chr3 31457870 31457897 -186579261 + AT_rich Low_complexity Low_complexity 1 27 0 199 228 22 0 chr3 31458424 31458516 -186578642 + (TCCA)n Simple_repeat Simple_repeat 4 97 0 536 342 64 40 chr3 31459297 31459815 -186577343 + L2 LINE L2 2347 2876 -438 312 350 56 56 chr3 31460443 31460766 -186576392 + L2 LINE L2 2941 3263 -9 544 206 3 31 chr3 31462331 31462458 -186574700 + MER5A DNA MER1_type 1 114 -64 1288 104 0 16 chr3 31462529 31462712 -186574446 + AluSg/x SINE Alu 132 311 -1 352 344 62 33 chr3 31463704 31463945 -186573213 + L2 LINE L2 2565 2812 -502 414 276 128 68 chr3 31463973 31464339 -186572819 - L2 LINE L2 0 3313 2926 1827 156 113 43 chr3 31464516 31464914 -186572244 - MSTB LTR MaLR 0 426 1 496 272 79 88 chr3 31465080 31465422 -186571736 + MLT1H LTR MaLR 195 533 -16 2793 103 92 2 chr3 31465660 31466106 -186571052 + LTR19A LTR ERV1 1 486 0 26 30 0 0 chr3 31466124 31466157 -186571001 + AT_rich Low_complexity Low_complexity 1 33 0 238 315 76 11 chr3 31466191 31466283 -186570875 + L2 LINE L2 3163 3260 -12 2055 116 73 14 chr3 31467377 31467731 -186569427 + THE1C LTR MaLR 1 375 0 457 233 203 0 chr3 31468570 31468703 -186568455 + LTR16C LTR ERVL 317 476 -15 1628 156 39 11 chr3 31468816 31469098 -186568060 - AluJo SINE Alu -16 296 7 186 318 0 0 chr3 31470271 31470315 -186566843 + MIR SINE MIR 196 239 -23 218 359 57 0 chr3 31470341 31470447 -186566711 - L2 LINE L2 -224 3048 2937 42130 38 23 1 chr3 31470748 31476767 -186560391 - L1PA3 LINE L1 0 6155 4 2015 63 4 4 chr3 31477812 31478065 -186559093 - AluY SINE Alu -30 281 29 261 0 0 0 chr3 31478868 31478897 -186558261 + (T)n Simple_repeat Simple_repeat 1 29 0 205 325 124 35 chr3 31479305 31479474 -186557684 - MIR3 SINE MIR -7 201 18 2321 107 3 0 chr3 31480184 31480484 -186556674 - AluSp SINE Alu -11 302 2 674 295 39 47 chr3 31480648 31481007 -186556151 + LTR16A LTR ERVL 7 362 -88 1031 308 79 16 chr3 31481084 31481741 -186555417 - L2 LINE L2 -1 3312 2617 1778 263 71 43 chr3 31482238 31482399 -186554759 + L1M4 LINE L1 3297 3452 -2694 8452 87 15 1 chr3 31482399 31484367 -186552791 - L1PA7 LINE L1 -1 6153 4162 1778 263 71 43 chr3 31484367 31484993 -186552165 + L1M4 LINE L1 3452 4106 -2040 4738 201 81 112 chr3 31485004 31486275 -186550883 + L1MC3 LINE L1 5961 7191 -594 387 256 0 20 chr3 31486275 31486375 -186550783 + MLT1F1 LTR MaLR 35 133 -442 4738 201 81 112 chr3 31486375 31486953 -186550205 + L1MC3 LINE L1 7191 7785 0 403 276 117 54 chr3 31487607 31487846 -186549312 - MIR SINE MIR 0 262 9 7869 171 10 5 chr3 31487913 31487991 -186549167 + L1PB1 LINE L1 3710 3786 -2365 1968 147 0 17 chr3 31487991 31488290 -186548868 + AluSx SINE Alu 1 294 -18 7869 171 10 5 chr3 31488290 31490649 -186546509 + L1PB1 LINE L1 3786 6151 0 221 98 24 0 chr3 31490879 31490920 -186546238 + (TA)n Simple_repeat Simple_repeat 1 42 0 31 26 0 0 chr3 31491233 31491271 -186545887 + AT_rich Low_complexity Low_complexity 1 38 0 26 64 0 0 chr3 31492049 31492096 -186545062 + AT_rich Low_complexity Low_complexity 1 47 0 5778 147 71 35 chr3 31492726 31493914 -186543244 + Tigger3b DNA MER2_type 2 1231 0 186 333 0 28 chr3 31495024 31495096 -186542062 + L2 LINE L2 3232 3301 -12 1069 246 173 43 chr3 31496396 31496795 -186540363 + LTR16B LTR ERVL 1 451 -13 981 268 101 36 chr3 31497172 31497587 -186539571 + MLT1J2 LTR MaLR 1 442 -8 295 277 141 5 chr3 31497968 31498152 -186539006 - MER41B LTR ERV1 -299 336 128 460 248 63 136 chr3 31498226 31498609 -186538549 + MLT1H LTR MaLR 15 369 -221 2658 42 0 0 chr3 31499672 31499981 -186537177 + AluY SINE Alu 1 309 -2 688 274 159 36 chr3 31500534 31501062 -186536096 + MLT1G1 LTR MaLR 1 555 0 555 293 35 47 chr3 31501112 31501344 -186535814 - MIR SINE MIR -13 249 21 23 33 0 0 chr3 31501348 31501378 -186535780 + AT_rich Low_complexity Low_complexity 1 30 0 424 242 11 0 chr3 31502138 31502233 -186534925 - Zaphod DNA AcHobo 0 4031 3936 832 298 110 43 chr3 31502490 31502980 -186534178 + MLT1G1 LTR MaLR 73 595 0 206 337 102 20 chr3 31503030 31503128 -186534030 + MIR SINE MIR 27 132 -130 1649 181 22 0 chr3 31505504 31505824 -186531334 - L1P LINE L1 -1229 4917 4591 5830 110 17 2 chr3 31505825 31507000 -186530158 + L1PA16 LINE L1 4965 6157 -9 31 44 0 0 chr3 31507014 31507059 -186530099 + AT_rich Low_complexity Low_complexity 1 45 0 190 230 150 110 chr3 31507147 31507247 -186529911 + MER5A DNA MER1_type 6 109 -80 1967 128 0 0 chr3 31507793 31508075 -186529083 + AluY SINE Alu 30 311 0 1418 249 129 42 chr3 31508576 31509119 -186528039 - MLT1G LTR MaLR 0 590 1 25 31 0 0 chr3 31509454 31509486 -186527672 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr3 31510343 31510364 -186526794 + AT_rich Low_complexity Low_complexity 1 21 0 915 221 133 17 chr3 31510750 31510990 -186526168 - L1PA16 LINE L1 -3 6163 5896 301 301 0 0 chr3 31511426 31511509 -186525649 - L1MC4 LINE L1 -1340 6702 6620 352 263 54 71 chr3 31512538 31512762 -186524396 + L1MCa LINE L1 16 235 -6307 1688 240 38 45 chr3 31512939 31513818 -186523340 + L1M4 LINE L1 497 1348 -5198 1018 222 183 22 chr3 31513839 31514254 -186522904 + L1MCa LINE L1 261 742 -5902 1992 148 56 6 chr3 31514254 31514593 -186522565 - MER47A DNA MER2_type 0 366 11 2008 137 57 17 chr3 31514593 31514943 -186522215 - THE1B LTR MaLR 0 364 1 11465 91 15 5 chr3 31514943 31516507 -186520651 - THE1B-int LTR MaLR 0 1580 1 2251 107 51 28 chr3 31516507 31516863 -186520295 - THE1B LTR MaLR 0 364 1 2838 203 37 39 chr3 31516877 31517750 -186519408 + L1MCb LINE L1 470 1341 -4849 * 2965 245 80 17 chr3 31517737 31519667 -186517491 + L1MCb LINE L1 1608 3540 -3024 1480 219 12 3 chr3 31519714 31520057 -186517101 + L1PA16 LINE L1 5804 6149 -17 22 0 0 0 chr3 31520057 31520079 -186517079 + AT_rich Low_complexity Low_complexity 1 22 0 1484 207 63 107 chr3 31520104 31520711 -186516447 + L1MC4 LINE L1 7474 7995 0 6888 228 40 38 chr3 31520721 31522019 -186515139 + L1MB8 LINE L1 3564 4866 -1736 2001 122 32 102 chr3 31522019 31522422 -186514736 + THE1C LTR MaLR 1 375 0 6888 228 40 38 chr3 31522422 31523582 -186513576 + L1MB8 LINE L1 4866 6022 -580 1655 107 8 0 chr3 31523582 31523824 -186513334 - L1MA4 LINE L1 -424 5876 5633 2220 172 16 5 chr3 31523824 31524249 -186512909 + L1MA4 LINE L1 5870 6299 -1 1338 282 117 8 chr3 31524266 31524795 -186512363 + L1MB8 LINE L1 6010 6596 0 315 340 75 37 chr3 31524920 31525403 -186511755 + L2 LINE L2 1490 1990 -1324 360 353 20 25 chr3 31526086 31526287 -186510871 + L2 LINE L2 2302 2501 -813 203 152 0 0 chr3 31526348 31526381 -186510777 + (TG)n Simple_repeat Simple_repeat 2 34 0 327 330 94 0 chr3 31527293 31527484 -186509674 + MIR SINE MIR 8 216 -46 344 242 0 0 chr3 31527545 31527611 -186509547 + MIR SINE MIR 197 262 0 1941 141 29 35 chr3 31528376 31528753 -186508405 + THE1C LTR MaLR 1 375 0 595 317 96 12 chr3 31531958 31532302 -186504856 + LTR16C LTR ERVL 115 487 -4 342 267 11 11 chr3 31534094 31534184 -186502974 - L2 LINE L2 -24 3289 3200 432 213 115 0 chr3 31534230 31534352 -186502806 - MIR SINE MIR -25 237 102 42493 34 23 2 chr3 31534392 31540417 -186496741 + L1PA2 LINE L1 3 6155 0 228 91 0 0 chr3 31540557 31540590 -186496568 - MLT2F LTR ERVL 0 663 631 604 258 5 16 chr3 31540677 31540885 -186496273 - MLT2F LTR ERVL -405 258 9 2704 157 65 4 chr3 31541308 31541832 -186495326 + L1MB3 LINE L1 5626 6181 -2 1336 127 53 4 chr3 31541992 31542237 -186494921 + L1MA5 LINE L1 6040 6296 -4 1773 193 122 55 chr3 31542241 31542846 -186494312 - MER67D LTR ERV1 -4 399 25 450 138 69 11 chr3 31542879 31542966 -186494192 - LTR54 LTR ERV1 -418 92 1 558 226 27 14 chr3 31543194 31543340 -186493818 - MER57A-int LTR ERV1 -6427 1693 1546 1664 172 72 9 chr3 31543597 31543916 -186493242 - MER44D DNA MER2_type 0 609 1 1572 231 20 32 chr3 31543936 31544378 -186492780 - MER57A-int LTR ERV1 -1784 5753 5317 2021 122 0 49 chr3 31545424 31545752 -186491406 - AluSx SINE Alu 0 312 1 930 204 0 6 chr3 31546746 31546913 -186490245 - FRAM SINE Alu 0 166 1 256 114 0 0 chr3 31547022 31547057 -186490101 - MER57A-int LTR ERV1 -7276 261 227 688 312 26 13 chr3 31547089 31547320 -186489838 - MER57A-int LTR ERV1 -7290 247 14 503 256 49 30 chr3 31547334 31547537 -186489621 - MER57A LTR ERV1 0 403 197 394 158 73 24 chr3 31547577 31547659 -186489499 - LTR54 LTR ERV1 -424 86 1 494 163 0 0 chr3 31547659 31547739 -186489419 - MER67D LTR ERV1 -434 80 1 1301 239 114 74 chr3 31548249 31548773 -186488385 + L1ME LINE L1 309 853 -5687 1681 206 118 73 chr3 31548780 31549330 -186487828 + L1MD2 LINE L1 5768 6342 -17 455 299 95 9 chr3 31549427 31549798 -186487360 + L1ME LINE L1 2532 2969 -3571 570 253 17 34 chr3 31550023 31550256 -186486902 + L1MB8 LINE L1 5944 6172 -6 366 191 29 19 chr3 31550263 31550368 -186486790 + L1MCc LINE L1 52 157 -6266 281 167 17 0 chr3 31550367 31550427 -186486731 + L1MCc LINE L1 1135 1195 -5228 * 900 270 76 36 chr3 31550520 31550768 -186486390 + L1ME LINE L1 4504 4741 -1823 1960 140 20 0 chr3 31550768 31551060 -186486098 + AluSx SINE Alu 1 298 -14 900 270 76 36 chr3 31551060 31551095 -186486063 + L1ME LINE L1 4741 4773 -1791 2274 150 45 26 chr3 31551095 31551515 -186485643 - MSTA LTR MaLR 0 428 1 9074 153 64 4 chr3 31551515 31553072 -186484086 - MSTA-int LTR MaLR 0 1651 1 2068 185 33 33 chr3 31553072 31553500 -186483658 - MSTA LTR MaLR 0 428 1 900 270 76 36 chr3 31553500 31554721 -186482437 + L1ME LINE L1 4772 6193 -371 623 235 25 62 chr3 31554769 31555012 -186482146 + MER106A DNA MER1_type 2 235 -1 22 56 0 0 chr3 31555537 31555573 -186481585 + AT_rich Low_complexity Low_complexity 1 36 0 1244 287 90 36 chr3 31557858 31558440 -186478718 + L2 LINE L2 2456 3105 -208 524 237 34 0 chr3 31558440 31558558 -186478600 + FLAM_A SINE Alu 1 122 -11 1244 287 90 36 chr3 31558558 31558779 -186478379 + L2 LINE L2 3105 3313 0 24095 108 11 16 chr3 31560093 31564037 -186473121 + L1PA7 LINE L1 770 4694 -1452 6881 64 3 0 chr3 31564042 31565442 -186471716 + L1PA7 LINE L1 4758 6161 0 546 230 117 42 chr3 31565518 31565731 -186471427 + MIR SINE MIR 34 262 0 224 324 9 63 chr3 31565968 31566079 -186471079 + L2 LINE L2 3168 3272 0 351 331 5 65 chr3 31566121 31566305 -186470853 - L2 LINE L2 -234 3038 2866 860 198 22 127 chr3 31567137 31567500 -186469658 + LTR39 LTR ERV1 1 325 -458 633 221 13 7 chr3 31567554 31567708 -186469450 + LTR39 LTR ERV1 599 753 -30 367 283 182 25 chr3 31567850 31568048 -186469110 - MIR SINE MIR -29 233 5 1330 129 27 2 chr3 31568050 31568311 -186468847 - LTR54 LTR ERV1 0 510 212 25 31 0 0 chr3 31568558 31568590 -186468568 + AT_rich Low_complexity Low_complexity 1 32 0 3863 155 12 29 chr3 31569085 31569803 -186467355 - MER50 LTR ERV1 -28 706 1 1662 182 10 23 chr3 31569868 31570170 -186466988 - AluSg SINE Alu -12 298 1 712 203 6 0 chr3 31570530 31570693 -186466465 - L1P LINE L1 -1047 5099 4936 402 161 0 23 chr3 31570693 31570765 -186466393 + L1PA16 LINE L1 6081 6165 -1 2235 105 3 0 chr3 31571446 31571741 -186465417 - AluSx SINE Alu -16 296 1 626 197 41 14 chr3 31573047 31573194 -186463964 - L1MC3 LINE L1 -445 7340 7190 352 222 22 11 chr3 31573194 31573284 -186463874 - MLT1F1 LTR MaLR -442 125 35 2937 192 20 113 chr3 31573284 31574512 -186462646 - L1MC3 LINE L1 -688 7134 6006 1468 261 76 28 chr3 31574568 31575186 -186461972 - L1M4 LINE L1 -2042 4104 3457 8893 77 0 0 chr3 31575192 31577177 -186459981 + L1PA3 LINE L1 4162 6155 0 191 368 57 0 chr3 31577478 31577584 -186459574 + L2 LINE L2 2937 3048 -224 187 318 0 0 chr3 31577610 31577654 -186459504 - MIR SINE MIR -23 239 196 1649 161 38 10 chr3 31578824 31579115 -186458043 + AluJo SINE Alu 7 305 -7 413 241 203 0 chr3 31579219 31579352 -186457806 - LTR16C LTR ERVL -15 476 317 2061 116 73 14 chr3 31580191 31580545 -186456613 - THE1C LTR MaLR 0 375 1 241 315 76 11 chr3 31581639 31581731 -186455427 - L2 LINE L2 -12 3260 3163 26 30 0 0 chr3 31581765 31581798 -186455360 + AT_rich Low_complexity Low_complexity 1 33 0 2797 103 92 2 chr3 31581816 31582262 -186454896 - LTR19A LTR ERV1 0 486 1 398 265 86 83 chr3 31582500 31582813 -186454345 - MLT1H LTR MaLR -16 533 220 1841 156 113 43 chr3 31583008 31583406 -186453752 + MSTB LTR MaLR 1 426 0 884 186 52 4 chr3 31583606 31583837 -186453321 - AluY SINE Alu -41 270 29 252 0 0 0 chr3 31584639 31584667 -186452491 + (T)n Simple_repeat Simple_repeat 1 28 0 213 325 124 35 chr3 31585075 31585244 -186451914 - MIR3 SINE MIR -7 201 18 2322 110 3 0 chr3 31585954 31586254 -186450904 - AluSp SINE Alu -11 302 2 564 284 41 50 chr3 31586436 31586777 -186450381 + LTR16A LTR ERVL 25 362 -88 973 298 85 22 chr3 31586855 31587510 -186449648 - L2 LINE L2 -2 3311 2617 376 300 42 33 chr3 31587917 31588160 -186448998 + L1ME LINE L1 3211 3455 -2691 6811 62 6 2 chr3 31588169 31589554 -186447604 - L1PA7 LINE L1 -1 6153 4758 23943 109 11 16 chr3 31589559 31593502 -186443656 - L1PA7 LINE L1 -1452 4694 770 7613 147 41 33 chr3 31594400 31595910 -186441248 + L1P LINE L1 11 1532 -4614 388 248 111 0 chr3 31596119 31596236 -186440922 + MIR SINE MIR 99 228 -34 2086 132 0 10 chr3 31596509 31596813 -186440345 + AluSx SINE Alu 12 312 0 413 303 17 52 chr3 31597577 31597867 -186439291 + L1PA12 LINE L1 2 281 -7300 1413 139 31 38 chr3 31598623 31598910 -186438248 - THE1C LTR MaLR 0 375 91 7722 84 8 3 chr3 31599024 31600160 -186436998 + L1P LINE L1 3404 4545 -1601 514 355 18 0 chr3 31600423 31600640 -186436518 + MIR SINE MIR 15 235 -27 313 319 7 0 chr3 31601417 31601552 -186435606 + L1ME LINE L1 4900 5035 -1111 624 281 153 11 chr3 31601807 31602173 -186434985 + L1ME LINE L1 5354 5771 -393 2311 110 105 0 chr3 31602441 31602840 -186434318 + LTR7 LTR ERV1 1 441 -9 3186 118 5 50 chr3 31603125 31603159 -186433999 + L1P LINE L1 2095 2129 -4017 309 68 0 0 chr3 31603159 31603203 -186433955 + (TA)n Simple_repeat Simple_repeat 2 45 0 3186 118 5 50 chr3 31603203 31603224 -186433934 + L1P LINE L1 2129 2149 -3997 2660 87 0 6 chr3 31603224 31603590 -186433568 - L1PA5 LINE L1 -5 6149 5786 3186 118 5 50 chr3 31603590 31604135 -186433023 + L1P LINE L1 2149 2669 -3477 1794 172 14 8 chr3 31604509 31605169 -186431989 - L1PA5 LINE L1 -479 5684 5020 262 253 11 0 chr3 31605412 31605499 -186431659 + L1M4 LINE L1 2798 2885 -3964 3479 217 20 6 chr3 31605570 31606452 -186430706 + L1M4 LINE L1 2903 3797 -3051 848 164 20 40 chr3 31606623 31606824 -186430334 + MLT1B LTR MaLR 190 386 -4 195 298 131 0 chr3 31606828 31606912 -186430246 - MIR SINE MIR -126 136 42 217 267 89 11 chr3 31607013 31607103 -186430055 + MIR SINE MIR 47 143 -119 3274 188 21 4 chr3 31607806 31608557 -186428601 - L1 LINE L1 -1468 4678 3915 2020 296 67 20 chr3 31608948 31609762 -186427396 - L2 LINE L2 -237 3035 2174 2434 74 0 3 chr3 31609919 31610216 -186426942 + AluY SINE Alu 1 296 -15 2175 108 7 0 chr3 31610313 31610610 -186426548 + AluSx SINE Alu 1 299 -13 241 358 50 5 chr3 31611154 31611375 -186425783 + L1M4 LINE L1 4740 4970 -1878 2299 105 0 23 chr3 31611764 31612070 -186425088 - AluSg SINE Alu -11 299 1 1186 286 48 25 chr3 31612247 31612765 -186424393 - Tigger8 DNA MER2_type -126 540 11 445 271 30 56 chr3 31612844 31613164 -186423994 - MLT1F LTR MaLR -6 536 149 374 248 25 18 chr3 31613197 31613333 -186423825 - MLT1G3 LTR MaLR -349 200 8 1347 195 8 0 chr3 31613459 31613716 -186423442 + L1MC/D LINE L1 5374 5632 -712 391 165 47 0 chr3 31613721 31613806 -186423352 + L1MC2 LINE L1 6256 6344 0 266 238 10 20 chr3 31613868 31613969 -186423189 + L1M4 LINE L1 5252 5351 -1497 342 324 10 0 chr3 31614028 31614130 -186423028 + MIR SINE MIR 157 259 -3 590 313 78 36 chr3 31614236 31614543 -186422615 - L2 LINE L2 -1538 1776 1457 201 328 15 0 chr3 31614570 31614637 -186422521 + MER5A DNA MER1_type 122 189 0 3885 112 28 39 chr3 31615005 31616102 -186421056 - L1PA11 LINE L1 -237 5937 4841 345 62 0 0 chr3 31616446 31616494 -186420664 + (TG)n Simple_repeat Simple_repeat 1 48 0 315 397 0 9 chr3 31617088 31617204 -186419954 + L2 LINE L2 3150 3264 -8 410 249 289 0 chr3 31617641 31617866 -186419292 + LTR16A1 LTR ERVL 168 457 0 827 292 4 6 chr3 31619195 31619434 -186417724 + MIR SINE MIR 13 247 -15 284 231 0 0 chr3 31619452 31619504 -186417654 - L2 LINE L2 -3 3310 3259 290 143 16 0 chr3 31619555 31619618 -186417540 + (ATG)n Simple_repeat Simple_repeat 3 66 0 640 298 21 29 chr3 31620101 31620339 -186416819 + MIR SINE MIR 13 248 -14 21 0 0 0 chr3 31620617 31620638 -186416520 + AT_rich Low_complexity Low_complexity 1 21 0 32 26 0 0 chr3 31621118 31621157 -186416001 + AT_rich Low_complexity Low_complexity 1 39 0 5148 26 1 1 chr3 31621370 31622014 -186415144 - L1PA3 LINE L1 -894 5252 4605 7686 20 0 0 chr3 31622014 31622938 -186414220 + L1PA3 LINE L1 5260 6183 0 5472 23 0 0 chr3 31623015 31623713 -186413445 + L1PA3 LINE L1 5476 6173 0 1111 170 12 50 chr3 31624540 31624781 -186412377 - THE1B LTR MaLR -130 234 3 10967 95 12 9 chr3 31624783 31626193 -186410965 - THE1B-int LTR MaLR 0 1580 163 3223 76 30 11 chr3 31626193 31626629 -186410529 + MLT2A1 LTR ERVL 1 444 0 10967 95 12 9 chr3 31626629 31626793 -186410365 - THE1B-int LTR MaLR -1417 163 1 1975 146 32 46 chr3 31626793 31627162 -186409996 - THE1B LTR MaLR 0 364 1 13797 45 0 0 chr3 31627694 31629466 -186407692 - L1P LINE L1 -930 5216 3445 3329 66 0 0 chr3 31629466 31629880 -186407278 + L1PA5 LINE L1 5732 6154 0 843 180 195 7 chr3 31631037 31631309 -186405849 - MER33 DNA MER1_type 0 324 2 261 146 0 0 chr3 31631313 31631354 -186405804 - MER3 DNA MER1_type -165 44 4 213 240 36 167 chr3 31631408 31631600 -186405558 + MIR3 SINE MIR 23 189 -19 410 248 29 36 chr3 31632837 31632974 -186404184 - MLT1J2 LTR MaLR -51 399 264 432 212 77 53 chr3 31632999 31633169 -186403989 + MER58C DNA MER1_type 42 215 0 719 192 27 12 chr3 31633233 31633406 -186403752 - MLT1J1 LTR MaLR -289 222 6 1961 143 0 4 chr3 31633812 31634115 -186403043 + AluSc SINE Alu 1 302 0 490 333 48 26 chr3 31634217 31634448 -186402710 + MIR SINE MIR 26 261 -1 1104 280 45 47 chr3 31635092 31635495 -186401663 - LTR16C LTR ERVL -3 488 87 1365 215 107 57 chr3 31635635 31636123 -186401035 - MLT2B1 LTR ERVL -8 512 1 204 40 0 0 chr3 31636971 31636996 -186400162 + (TTA)n Simple_repeat Simple_repeat 1 25 0 2020 287 131 19 chr3 31637026 31638005 -186399153 - L2 LINE L2 -42 3271 2174 2434 74 0 3 chr3 31638162 31638459 -186398699 + AluY SINE Alu 1 296 -15 2410 98 3 0 chr3 31638556 31638863 -186398295 + AluSp SINE Alu 1 308 -5 225 0 0 0 chr3 31638863 31638888 -186398270 + (TA)n Simple_repeat Simple_repeat 1 25 0 649 283 20 16 chr3 31638957 31639208 -186397950 - L1ME LINE L1 -328 5793 5542 1396 100 273 9 chr3 31639297 31639528 -186397630 + AluSg1 SINE Alu 1 292 -17 496 330 0 36 chr3 31639876 31640070 -186397088 + MER5A DNA MER1_type 2 188 -1 23 0 0 0 chr3 31640467 31640490 -186396668 + AT_rich Low_complexity Low_complexity 1 23 0 735 225 39 0 chr3 31640680 31640858 -186396300 + MER5A DNA MER1_type 2 186 -3 623 192 70 32 chr3 31640862 31641018 -186396140 - MER5A DNA MER1_type -21 168 7 386 282 29 24 chr3 31641154 31641324 -186395834 + LTR16C LTR ERVL 309 479 -12 690 232 170 47 chr3 31643541 31643930 -186393228 - MER110 LTR ERV1 0 468 63 2139 128 10 7 chr3 31644674 31644979 -186392179 - AluSx SINE Alu -6 306 1 586 268 54 30 chr3 31646369 31646537 -186390621 - MER5B DNA MER1_type 0 178 7 1902 147 49 30 chr3 31646723 31647091 -186390067 - THE1C LTR MaLR 0 375 1 364 320 55 5 chr3 31648105 31648305 -186388853 - LTR16C LTR ERVL -101 390 181 272 345 0 43 chr3 31648324 31648440 -186388718 + MIR SINE MIR 22 132 -76 305 247 54 32 chr3 31648785 31648878 -186388280 - L2 LINE L2 0 3313 3219 450 259 47 75 chr3 31651637 31651892 -186385266 + LTR16A1 LTR ERVL 210 457 0 279 294 55 0 chr3 31651999 31652145 -186385013 + L1MC5 LINE L1 5805 5958 -1850 1846 145 93 3 chr3 31652167 31652512 -186384646 + MLT1B LTR MaLR 15 390 0 3677 245 10 22 chr3 31652516 31653777 -186383381 + L1M4 LINE L1 2787 4032 -2114 1683 221 113 35 chr3 31653838 31654530 -186382628 + L1MC5 LINE L1 6694 7439 -522 334 200 11 32 chr3 31654567 31654662 -186382496 + L1MEc LINE L1 1928 2020 -4376 4221 237 69 22 chr3 31654702 31655191 -186381967 + L1MEc LINE L1 2122 2587 -3628 1905 127 39 75 chr3 31655191 31655577 -186381581 + THE1C LTR MaLR 1 372 -3 4221 237 69 22 chr3 31655577 31656011 -186381147 + L1MEc LINE L1 2587 2999 -3216 2218 135 30 25 chr3 31656011 31656373 -186380785 - THE1B LTR MaLR 0 364 1 4221 237 69 22 chr3 31656373 31657133 -186380025 + L1MEc LINE L1 2999 3845 -2370 509 211 66 110 chr3 31657248 31657438 -186379720 + L1MC5 LINE L1 7610 7782 -179 2079 130 0 3 chr3 31657438 31657738 -186379420 + AluSx SINE Alu 1 299 -13 509 211 66 110 chr3 31657738 31657865 -186379293 + L1MC5 LINE L1 7782 7913 -48 39 0 0 0 chr3 31657874 31657913 -186379245 + AT_rich Low_complexity Low_complexity 1 39 0 209 358 11 32 chr3 31658185 31658280 -186378878 - L2 LINE L2 -6 3307 3215 750 213 46 51 chr3 31658476 31658692 -186378466 - MER58C DNA MER1_type 0 215 1 435 282 42 28 chr3 31659959 31660101 -186377057 - MIR SINE MIR -117 145 2 538 276 94 26 chr3 31660241 31660433 -186376725 - MIR SINE MIR -47 215 11 1361 115 15 10 chr3 31663793 31663993 -186373165 + AluSq SINE Alu 107 307 -6 1919 230 43 36 chr3 31664245 31664996 -186372162 + L1MEc LINE L1 3917 4672 -1543 877 119 0 0 chr3 31665426 31665544 -186371614 - AluSg SINE Alu -192 118 1 349 69 0 0 chr3 31665545 31665603 -186371555 + HSMAR2 DNA Mariner 1244 1301 -1 236 352 57 0 chr3 31665603 31665691 -186371467 - MIR SINE MIR -71 137 45 236 323 186 32 chr3 31665841 31665965 -186371193 + L2 LINE L2 3121 3263 -9 3885 112 28 39 chr3 31667195 31668292 -186368866 - L1PA11 LINE L1 -237 5937 4841 327 65 0 0 chr3 31668636 31668682 -186368476 + (TG)n Simple_repeat Simple_repeat 1 46 0 315 397 0 9 chr3 31669276 31669392 -186367766 + L2 LINE L2 3150 3264 -8 410 249 289 0 chr3 31669829 31670054 -186367104 + LTR16A1 LTR ERVL 168 457 0 849 286 2 19 chr3 31671383 31671622 -186365536 + MIR SINE MIR 13 247 -15 284 231 0 0 chr3 31671640 31671692 -186365466 - L2 LINE L2 -3 3310 3259 290 143 16 0 chr3 31671743 31671806 -186365352 + (ATG)n Simple_repeat Simple_repeat 3 66 0 637 286 25 34 chr3 31672289 31672527 -186364631 + MIR SINE MIR 13 248 -14 21 0 0 0 chr3 31672805 31672826 -186364332 + AT_rich Low_complexity Low_complexity 1 21 0 32 26 0 0 chr3 31673306 31673345 -186363813 + AT_rich Low_complexity Low_complexity 1 39 0 5136 28 1 1 chr3 31673558 31674202 -186362956 - L1PA3 LINE L1 -894 5252 4605 7658 21 0 0 chr3 31674202 31675122 -186362036 + L1PA3 LINE L1 5260 6179 0 5460 24 0 0 chr3 31675199 31675897 -186361261 + L1PA3 LINE L1 5476 6173 0 1111 170 12 50 chr3 31676724 31676965 -186360193 - THE1B LTR MaLR -130 234 3 10967 95 12 9 chr3 31676967 31678377 -186358781 - THE1B-int LTR MaLR 0 1580 163 3173 80 30 11 chr3 31678377 31678813 -186358345 + MLT2A1 LTR ERVL 1 444 0 10967 95 12 9 chr3 31678813 31678977 -186358181 - THE1B-int LTR MaLR -1417 163 1 1933 152 32 46 chr3 31678977 31679346 -186357812 - THE1B LTR MaLR 0 364 1 13832 43 0 0 chr3 31679878 31681650 -186355508 - L1P LINE L1 -930 5216 3445 3329 66 0 0 chr3 31681650 31682064 -186355094 + L1PA5 LINE L1 5732 6154 0 843 180 195 7 chr3 31683221 31683493 -186353665 - MER33 DNA MER1_type 0 324 2 261 146 0 0 chr3 31683497 31683538 -186353620 - MER3 DNA MER1_type -165 44 4 213 240 36 167 chr3 31683592 31683784 -186353374 + MIR3 SINE MIR 23 189 -19 410 248 29 36 chr3 31685021 31685158 -186352000 - MLT1J2 LTR MaLR -51 399 264 432 212 77 53 chr3 31685183 31685353 -186351805 + MER58C DNA MER1_type 42 215 0 719 192 27 12 chr3 31685417 31685590 -186351568 - MLT1J1 LTR MaLR -289 222 6 1935 146 0 4 chr3 31685996 31686299 -186350859 + AluSc SINE Alu 1 302 0 490 333 48 26 chr3 31686401 31686632 -186350526 + MIR SINE MIR 26 261 -1 1092 283 45 47 chr3 31687276 31687679 -186349479 - LTR16C LTR ERVL -3 488 87 1365 215 107 57 chr3 31687819 31688307 -186348851 - MLT2B1 LTR ERVL -8 512 1 204 40 0 0 chr3 31689152 31689177 -186347981 + (TTA)n Simple_repeat Simple_repeat 1 25 0 2020 287 131 19 chr3 31689207 31690186 -186346972 - L2 LINE L2 -42 3271 2174 2434 74 0 3 chr3 31690343 31690640 -186346518 + AluY SINE Alu 1 296 -15 2410 98 3 0 chr3 31690737 31691044 -186346114 + AluSp SINE Alu 1 308 -5 225 0 0 0 chr3 31691044 31691069 -186346089 + (TA)n Simple_repeat Simple_repeat 2 26 0 649 283 20 16 chr3 31691138 31691389 -186345769 - L1ME LINE L1 -328 5793 5542 1396 100 273 9 chr3 31691478 31691709 -186345449 + AluSg1 SINE Alu 1 292 -17 496 330 0 36 chr3 31692057 31692251 -186344907 + MER5A DNA MER1_type 2 188 -1 23 0 0 0 chr3 31692648 31692671 -186344487 + AT_rich Low_complexity Low_complexity 1 23 0 735 225 39 0 chr3 31692861 31693039 -186344119 + MER5A DNA MER1_type 2 186 -3 623 192 70 32 chr3 31693043 31693199 -186343959 - MER5A DNA MER1_type -21 168 7 386 282 29 24 chr3 31693335 31693505 -186343653 + LTR16C LTR ERVL 309 479 -12 690 232 170 47 chr3 31695722 31696111 -186341047 - MER110 LTR ERV1 0 468 63 2139 128 10 7 chr3 31696855 31697160 -186339998 - AluSx SINE Alu -6 306 1 586 268 54 30 chr3 31698550 31698718 -186338440 - MER5B DNA MER1_type 0 178 7 1902 147 49 30 chr3 31698904 31699272 -186337886 - THE1C LTR MaLR 0 375 1 364 320 55 5 chr3 31700286 31700486 -186336672 - LTR16C LTR ERVL -101 390 181 272 345 0 43 chr3 31700505 31700621 -186336537 + MIR SINE MIR 22 132 -76 305 247 54 32 chr3 31700966 31701059 -186336099 - L2 LINE L2 0 3313 3219 526 255 47 75 chr3 31703818 31704073 -186333085 + LTR16A1 LTR ERVL 210 457 0 312 294 55 0 chr3 31704180 31704326 -186332832 + L1MC5 LINE L1 5805 5958 -1850 1965 145 93 3 chr3 31704348 31704693 -186332465 + MLT1B LTR MaLR 15 390 0 3980 245 10 22 chr3 31704697 31705958 -186331200 + L1M4 LINE L1 2787 4032 -2114 1877 221 113 35 chr3 31706019 31706711 -186330447 + L1MC5 LINE L1 6694 7439 -522 361 200 11 32 chr3 31706748 31706843 -186330315 + L1MC5 LINE L1 1928 2020 -4376 4616 236 76 34 chr3 31706883 31707372 -186329786 + L1MC5 LINE L1 2122 2589 -5441 1899 127 39 75 chr3 31707372 31707758 -186329400 + THE1C LTR MaLR 1 372 -3 4616 236 76 34 chr3 31707758 31708192 -186328966 + L1MC5 LINE L1 2589 3004 -5026 2211 135 30 25 chr3 31708192 31708554 -186328604 - THE1B LTR MaLR 0 364 1 4616 236 76 34 chr3 31708554 31709619 -186327539 + L1MC5 LINE L1 3004 4023 -4007 2059 130 0 3 chr3 31709619 31709919 -186327239 + AluSx SINE Alu 1 299 -13 4616 236 76 34 chr3 31709919 31710048 -186327110 + L1MC5 LINE L1 4023 7984 -46 39 0 0 0 chr3 31710055 31710094 -186327064 + AT_rich Low_complexity Low_complexity 1 39 0 213 358 11 32 chr3 31710366 31710461 -186326697 - L2 LINE L2 -6 3307 3215 754 213 46 51 chr3 31710657 31710873 -186326285 - MER58C DNA MER1_type 0 215 1 423 282 42 28 chr3 31712140 31712282 -186324876 - MIR SINE MIR -117 145 2 531 276 94 26 chr3 31712422 31712614 -186324544 - MIR SINE MIR -47 215 11 1456 112 10 5 chr3 31715974 31716180 -186320978 + AluSq SINE Alu 107 313 0 297 185 0 0 chr3 31716220 31716285 -186320873 + CT-rich Low_complexity Low_complexity 2 66 0 807 322 143 26 chr3 31716471 31717126 -186320032 + L2 LINE L2 2100 2831 -483 276 391 8 0 chr3 31717709 31717837 -186319321 - MER5B DNA MER1_type -29 149 21 267 386 14 14 chr3 31718286 31718426 -186318732 + MIR SINE MIR 15 154 -108 222 159 68 0 chr3 31719426 31719470 -186317688 + MIR SINE MIR 31 77 -185 1283 251 111 18 chr3 31719484 31719882 -186317276 + LTR16A LTR ERVL 16 450 0 810 207 12 30 chr3 31719882 31720051 -186317107 + MIR SINE MIR 76 241 -21 640 246 198 56 chr3 31720984 31721398 -186315760 + L2 LINE L2 2169 2641 -673 1895 145 3 27 chr3 31721628 31721924 -186315234 - AluJb SINE Alu -23 289 1 545 139 12 0 chr3 31722063 31722149 -186315009 + FLAM_A SINE Alu 41 127 -15 208 135 0 0 chr3 31722191 31722228 -186314930 + L2 LINE L2 3277 3313 0 326 351 37 27 chr3 31722296 31722484 -186314674 - MIR SINE MIR -13 249 60 351 0 0 0 chr3 31722838 31722877 -186314281 + (CA)n Simple_repeat Simple_repeat 1 39 0 267 216 0 0 chr3 31722976 31723027 -186314131 + MIR3 SINE MIR 135 185 -23 181 307 238 10 chr3 31723102 31723203 -186313955 + MIR SINE MIR 106 229 -33 1772 160 46 146 chr3 31723234 31723753 -186313405 + MLT1C LTR MaLR 1 467 0 390 234 119 40 chr3 31723810 31723917 -186313241 + MER112 DNA MER1_type 1 98 -162 524 15 15 0 chr3 31723917 31723982 -186313176 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 390 234 119 40 chr3 31723982 31724075 -186313083 + MER112 DNA MER1_type 98 217 -43 26 50 0 0 chr3 31724584 31724624 -186312534 + AT_rich Low_complexity Low_complexity 1 40 0 1745 184 0 3 chr3 31724886 31725191 -186311967 + AluJo SINE Alu 1 304 0 1340 291 90 2 chr3 31725528 31725974 -186311184 + MER69 DNA AcHobo 84 568 -658 554 213 115 0 chr3 31725972 31726146 -186311012 + MER69 DNA AcHobo 2010 2203 -323 * 1132 295 83 13 chr3 31726848 31727461 -186309697 + HAL1b LINE L1 120 775 -573 384 226 68 68 chr3 31727464 31727610 -186309548 + L1MB1 LINE L1 5610 5755 -415 2015 190 47 49 chr3 31727740 31728192 -186308966 + MER74C LTR ERVL 10 460 0 454 269 50 0 chr3 31728203 31728322 -186308836 - MER45A DNA AcHobo -53 125 1 49 52 0 0 chr3 31728444 31728521 -186308637 + AT_rich Low_complexity Low_complexity 1 77 0 21 0 0 0 chr3 31728618 31728639 -186308519 + AT_rich Low_complexity Low_complexity 1 21 0 815 159 91 58 chr3 31728784 31728880 -186308278 + L1MB1 LINE L1 5954 6045 -123 1942 122 3 28 chr3 31728880 31729196 -186307962 + AluSx SINE Alu 1 309 0 815 159 91 58 chr3 31729196 31729306 -186307852 + L1MB1 LINE L1 6045 6168 0 1691 153 167 16 chr3 31729607 31729979 -186307179 + MSTA LTR MaLR 1 428 0 1317 202 12 19 chr3 31731038 31731164 -186305994 + AluJb SINE Alu 1 126 -186 456 19 0 0 chr3 31731164 31731217 -186305941 + (TA)n Simple_repeat Simple_repeat 1 53 0 303 93 0 0 chr3 31731219 31731262 -186305896 + (CA)n Simple_repeat Simple_repeat 2 44 0 1317 202 12 19 chr3 31731262 31731389 -186305769 + AluJb SINE Alu 127 255 -57 42 0 0 0 chr3 31731390 31731432 -186305726 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr3 31731534 31731556 -186305602 + AT_rich Low_complexity Low_complexity 1 22 0 2277 103 3 0 chr3 31731712 31732013 -186305145 - AluSx SINE Alu -10 302 1 816 274 95 40 chr3 31732429 31732852 -186304306 + LTR33 LTR ERVL 7 452 -69 22 56 0 0 chr3 31733894 31733930 -186303228 + AT_rich Low_complexity Low_complexity 1 36 0 1501 111 0 0 chr3 31735090 31735288 -186301870 + AluSg/x SINE Alu 97 294 -16 408 161 0 23 chr3 31735969 31736056 -186301102 - L1PA16 LINE L1 -1 6165 6081 688 196 7 0 chr3 31736056 31736204 -186300954 + L1P LINE L1 4951 5099 -1047 1916 161 121 5 chr3 31736209 31736582 -186300576 + MSTA LTR MaLR 1 416 -12 377 160 18 49 chr3 31736583 31736706 -186300452 + L1P LINE L1 5121 5236 -910 1892 159 62 0 chr3 31736806 31737126 -186300032 + MER2 DNA MER2_type 6 345 0 245 98 24 0 chr3 31737130 31737171 -186299987 + (CTAAA)n Simple_repeat Simple_repeat 4 45 0 231 229 0 16 chr3 31738282 31738343 -186298815 - MLT1H LTR MaLR -391 158 99 226 356 136 0 chr3 31738447 31738579 -186298579 + MIR3 SINE MIR 16 165 -43 1356 261 45 14 chr3 31739097 31739541 -186297617 + LTR37B LTR ERV1 5 462 -6 252 79 0 26 chr3 31740428 31740466 -186296692 + FLAM SINE Alu 86 122 -11 22 88 0 0 chr3 31740522 31740579 -186296579 + AT_rich Low_complexity Low_complexity 1 57 0 227 195 0 0 chr3 31741274 31741315 -186295843 + L2 LINE L2 3272 3312 -1 989 266 80 47 chr3 31741631 31742033 -186295125 - LTR16A LTR ERVL -18 432 18 195 129 0 0 chr3 31742098 31742129 -186295029 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 237 347 27 40 chr3 31742569 31742719 -186294439 - MIR SINE MIR -50 212 65 22 0 0 0 chr3 31743749 31743771 -186293387 + AT_rich Low_complexity Low_complexity 1 22 0 5794 116 28 11 chr3 31743904 31744758 -186292400 + L1MA3 LINE L1 5382 6253 -52 2090 124 3 3 chr3 31744758 31745057 -186292101 + AluSq SINE Alu 1 299 -14 5794 116 28 11 chr3 31745057 31745111 -186292047 + L1MA3 LINE L1 6253 6305 0 462 291 53 67 chr3 31745229 31745496 -186291662 - MIR SINE MIR 0 262 2 365 253 0 11 chr3 31745665 31745752 -186291406 + MARNA DNA Mariner 298 383 -203 229 346 88 13 chr3 31745794 31745953 -186291205 + MARNA DNA Mariner 398 568 -18 236 299 126 0 chr3 31747193 31747280 -186289878 - MIR SINE MIR -81 181 84 6389 254 63 22 chr3 31748857 31751601 -186285557 + L1ME1 LINE L1 1110 3741 -2474 2601 51 0 3 chr3 31751601 31751913 -186285245 + AluY SINE Alu 1 311 0 6389 254 63 22 chr3 31751913 31752338 -186284820 + L1ME1 LINE L1 3741 4147 -2068 1687 178 0 14 chr3 31752338 31752624 -186284534 + AluJo SINE Alu 7 288 -24 6389 254 63 22 chr3 31752624 31753549 -186283609 + L1ME1 LINE L1 4147 5348 -867 814 286 65 62 chr3 31753694 31754278 -186282880 + PABL_B LTR ERV1 82 667 0 2388 220 32 41 chr3 31754278 31754911 -186282247 + L1ME1 LINE L1 5604 6230 -5 7212 78 8 0 chr3 31755501 31756890 -186280268 + L1PA8 LINE L1 4769 6164 -8 255 250 0 0 chr3 31757683 31757735 -186279423 - L2 LINE L2 -1 3312 3261 2137 102 33 20 chr3 31758166 31758470 -186278688 - AluSx SINE Alu -4 308 1 267 325 12 0 chr3 31758561 31758644 -186278514 - L3 LINE CR1 -205 1372 1289 30 45 0 0 chr3 31758747 31758791 -186278367 + AT_rich Low_complexity Low_complexity 1 44 0 825 325 139 18 chr3 31758979 31759484 -186277674 - L3 LINE CR1 -330 1247 682 303 318 0 0 chr3 31759520 31759608 -186277550 + L1MC4 LINE L1 6614 6701 -1341 228 156 0 0 chr3 31759608 31759653 -186277505 + LTR66 LTR ERVL 394 438 -172 * 230 156 0 0 chr3 31759615 31759660 -186277498 - LTR66 LTR ERVL -172 438 394 314 247 11 34 chr3 31759660 31759749 -186277409 - L1MC4 LINE L1 -1341 6701 6615 345 275 0 11 chr3 31759756 31759847 -186277311 - L1MC4 LINE L1 -1339 6703 6614 322 289 0 11 chr3 31759768 31759858 -186277300 + L1MC4 LINE L1 6614 6702 -1340 * 306 73 0 0 chr3 31759865 31759906 -186277252 + (CA)n Simple_repeat Simple_repeat 2 42 0 472 246 207 6 chr3 31759908 31760087 -186277071 - L3 LINE CR1 -903 674 460 23 0 0 0 chr3 31761051 31761074 -186276084 + AT_rich Low_complexity Low_complexity 1 23 0 492 25 25 25 chr3 31761133 31761212 -186275946 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 241 316 94 43 chr3 31761319 31761436 -186275722 - MIR SINE MIR -62 146 24 367 323 132 6 chr3 31761733 31761900 -186275258 + MIR3 SINE MIR 20 207 -1 529 264 115 92 chr3 31762069 31762505 -186274653 - MLT1J1 LTR MaLR 0 446 1 1715 162 15 42 chr3 31763450 31763783 -186273375 - MER33 DNA MER1_type 0 324 1 560 234 58 13 chr3 31765328 31765482 -186271676 + MIR SINE MIR 102 262 0 3903 117 11 0 chr3 31765664 31766185 -186270973 + MER1A DNA MER1_type 1 527 0 592 225 8 23 chr3 31766591 31766720 -186270438 + MLT1J2 LTR MaLR 83 209 -241 427 190 13 0 chr3 31766795 31766874 -186270284 + MLT1J2 LTR MaLR 361 440 -10 332 320 82 46 chr3 31767216 31767722 -186269436 + L2 LINE L2 2710 3311 -2 273 325 30 24 chr3 31767953 31768122 -186269036 - L1 LINE L1 -3549 2597 2428 230 143 0 0 chr3 31768182 31768224 -186268934 + MER46C DNA MER2_type 127 168 -170 378 0 0 0 chr3 31768724 31768766 -186268392 + (TA)n Simple_repeat Simple_repeat 2 43 0 970 260 25 1 chr3 31769319 31769555 -186267603 - MLT1E3 LTR MaLR 0 624 336 1146 255 154 68 chr3 31769555 31770101 -186267057 - MLT1E LTR MaLR 0 593 1 970 260 25 1 chr3 31770101 31770129 -186267029 - MLT1E3 LTR MaLR -288 336 310 547 311 159 21 chr3 31770114 31770548 -186266610 + MLT1L LTR MaLR 112 605 -10 * 194 237 40 40 chr3 31770705 31770781 -186266377 + MIR SINE MIR 129 204 -58 2443 53 3 13 chr3 31771303 31771606 -186265552 + AluY SINE Alu 3 302 -9 660 219 42 110 chr3 31771779 31772245 -186264913 - MLT1H LTR MaLR 0 580 1 497 259 168 0 chr3 31772407 31772592 -186264566 + MIR SINE MIR 47 262 0 212 267 89 11 chr3 31773805 31773895 -186263263 - MIR SINE MIR -119 143 47 189 298 131 0 chr3 31773996 31774080 -186263078 + MIR SINE MIR 42 136 -126 2226 134 26 18 chr3 31774084 31774464 -186262694 - MLT1B LTR MaLR -4 386 4 1174 248 116 14 chr3 31774520 31774883 -186262275 - MLT1E2 LTR MaLR -10 616 217 532 218 62 76 chr3 31774928 31775153 -186262005 + L2 LINE L2 3027 3248 -65 920 178 29 7 chr3 31775197 31775388 -186261770 - MLT1D LTR MaLR -337 168 1 702 235 105 6 chr3 31775504 31775666 -186261492 + MER20 DNA MER1_type 38 215 -4 634 252 75 57 chr3 31775907 31776189 -186260969 - L2 LINE L2 0 3313 3027 502 236 159 19 chr3 31777625 31777712 -186259446 + MER5A DNA MER1_type 10 83 -106 2432 160 44 12 chr3 31777712 31778125 -186259033 - MSTB LTR MaLR 0 426 1 502 236 159 19 chr3 31778125 31778194 -186258964 + MER5A DNA MER1_type 83 188 -1 879 271 158 16 chr3 31778202 31778627 -186258531 + MLT1K LTR MaLR 2 486 -102 11054 32 2 2 chr3 31778709 31780727 -186256431 - L1PA4 LINE L1 -1 6154 4138 1484 272 79 24 chr3 31782707 31783215 -186253943 - MLT1H LTR MaLR -13 536 1 1083 152 69 73 chr3 31783256 31783618 -186253540 + MER31A LTR ERV1 10 483 -2 821 310 77 30 chr3 31784741 31785206 -186251952 - L2 LINE L2 0 3313 2827 429 252 0 0 chr3 31785208 31785315 -186251843 - L1P LINE L1 -1606 4540 4434 974 83 0 0 chr3 31785315 31785436 -186251722 + L1PA16 LINE L1 6036 6156 -10 364 302 26 42 chr3 31785454 31785646 -186251512 - L2 LINE L2 -461 2853 2665 216 97 0 0 chr3 31785918 31785949 -186251209 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 298 244 198 0 chr3 31787582 31787668 -186249490 - MLT1K LTR MaLR -3 585 483 579 92 0 0 chr3 31787697 31787784 -186249374 + (TC)n Simple_repeat Simple_repeat 2 88 0 730 119 0 0 chr3 31787874 31787975 -186249183 + MLT1A1 LTR MaLR 1 101 -264 635 211 64 65 chr3 31787981 31788335 -186248823 - LTR45B LTR ERV1 0 602 259 1618 144 0 0 chr3 31788508 31788744 -186248414 + MLT1A1 LTR MaLR 130 365 0 207 0 0 0 chr3 31789061 31789084 -186248074 + (CA)n Simple_repeat Simple_repeat 2 24 0 466 312 13 52 chr3 31789137 31789368 -186247790 + L3 LINE CR1 1282 1503 -74 26 0 0 0 chr3 31789556 31789582 -186247576 + AT_rich Low_complexity Low_complexity 1 26 0 1677 168 28 7 chr3 31789607 31789898 -186247260 - AluJb SINE Alu -9 303 7 252 349 23 8 chr3 31789968 31790097 -186247061 + MER102a DNA MER1_type 200 330 0 279 0 0 0 chr3 31790222 31790253 -186246905 + (TAA)n Simple_repeat Simple_repeat 3 33 0 320 366 23 6 chr3 31790331 31790506 -186246652 - MLT1I LTR MaLR 0 409 232 494 250 71 114 chr3 31790853 31790938 -186246220 - MLT1I LTR MaLR -2 424 337 2254 99 0 3 chr3 31790938 31791240 -186245918 + AluSg SINE Alu 1 301 -9 494 250 71 114 chr3 31791240 31791564 -186245594 - MLT1I LTR MaLR -89 337 1 505 241 26 43 chr3 31791570 31791709 -186245449 - MIR SINE MIR -61 147 54 275 249 55 152 chr3 31791832 31791997 -186245161 + MIR3 SINE MIR 52 200 -8 909 274 114 25 chr3 31792302 31792954 -186244204 + L2 LINE L2 2579 3310 -3 713 192 82 0 chr3 31793281 31793427 -186243731 - MER3 DNA MER1_type -28 181 24 1363 209 45 35 chr3 31794552 31794922 -186242236 - MLT1G LTR MaLR 0 590 155 650 247 52 6 chr3 31795051 31795225 -186241933 - MLT1G LTR MaLR -408 182 1 23 0 0 0 chr3 31795441 31795464 -186241694 + AT_rich Low_complexity Low_complexity 1 23 0 1986 127 0 7 chr3 31795464 31795747 -186241411 - AluSx SINE Alu -31 281 1 273 344 111 57 chr3 31796559 31796625 -186240533 - L2 LINE L2 -337 2977 2916 1694 189 10 13 chr3 31796625 31796938 -186240220 + AluJo SINE Alu 1 312 0 273 344 111 57 chr3 31796938 31797115 -186240043 - L2 LINE L2 -398 2916 2721 426 195 88 26 chr3 31798029 31798142 -186239016 - MER20B DNA MER1_type -621 162 43 2001 169 41 32 chr3 31798219 31798764 -186238394 - MLT2A2 LTR ERVL 0 554 1 771 10 79 10 chr3 31798889 31798990 -186238168 - L1P1 LINE L1 -397 5758 5651 2855 50 0 6 chr3 31798990 31799308 -186237850 + L1PA4 LINE L1 5820 6155 0 477 209 104 43 chr3 31799369 31799507 -186237651 - MER5A DNA MER1_type -10 179 11 536 216 90 0 chr3 31800055 31800166 -186236992 + MER96 DNA MER1_type? 1 121 -54 19942 81 17 9 chr3 31800287 31801892 -186235266 + L1PA6 LINE L1 544 2135 -4019 246 32 0 0 chr3 31801892 31801923 -186235235 + (TA)n Simple_repeat Simple_repeat 2 32 0 19942 81 17 9 chr3 31801923 31801949 -186235209 + L1PA6 LINE L1 2135 2159 -3995 2883 75 17 0 chr3 31801949 31802310 -186234848 - L1PA5 LINE L1 -2 6152 5786 19942 81 17 9 chr3 31802310 31806274 -186230884 + L1PA6 LINE L1 2159 6151 -3 244 381 9 0 chr3 31806916 31807021 -186230137 + MER5B DNA MER1_type 68 173 -5 1632 198 18 9 chr3 31807294 31807632 -186229526 + MLT1A1 LTR MaLR 23 363 -2 732 191 0 40 chr3 31807635 31807787 -186229371 + MER45A DNA AcHobo 33 178 0 448 325 45 51 chr3 31807791 31808123 -186229035 - L1ME4a LINE L1 -171 5950 5621 245 287 85 0 chr3 31808149 31808243 -186228915 - MER94 DNA DNA -23 111 10 500 159 0 0 chr3 31808671 31808759 -186228399 - L1PA16 LINE L1 -9 6157 6070 2196 74 0 40 chr3 31809253 31809550 -186227608 + AluY SINE Alu 1 285 -26 327 260 36 64 chr3 31809746 31809885 -186227273 + MIR SINE MIR 20 151 -57 747 261 63 43 chr3 31810349 31810652 -186226506 - MER93a LTR ERV1 0 402 94 247 289 72 62 chr3 31810806 31810903 -186226255 - L2 LINE L2 -36 3236 3139 409 238 0 12 chr3 31811443 31811527 -186225631 - MIR SINE MIR -171 91 9 307 291 8 43 chr3 31811529 31811646 -186225512 - HAL1 LINE L1 -941 1566 1454 214 128 0 51 chr3 31811646 31811685 -186225473 + (TTCCC)n Simple_repeat Simple_repeat 5 41 0 926 225 40 24 chr3 31811695 31811944 -186225214 - MLT1F LTR MaLR -289 253 1 207 0 0 0 chr3 31812192 31812215 -186224943 + (CAAT)n Simple_repeat Simple_repeat 4 26 0 26 30 0 0 chr3 31812291 31812324 -186224834 + AT_rich Low_complexity Low_complexity 1 33 0 20821 169 26 19 chr3 31812345 31816082 -186221076 - L1PA13 LINE L1 0 7601 3893 1771 167 43 32 chr3 31816082 31816453 -186220705 - THE1C LTR MaLR 0 375 1 20821 169 26 19 chr3 31816453 31816604 -186220554 - L1PA13 LINE L1 -3708 3893 3745 1913 139 28 3 chr3 31816604 31816892 -186220266 - AluSx SINE Alu -17 295 1 20821 169 26 19 chr3 31816892 31817290 -186219868 - L1PA13 LINE L1 -3856 3745 3351 2477 7 0 7 chr3 31817290 31817565 -186219593 + AluYa5 SINE Alu 39 311 0 20821 169 26 19 chr3 31817565 31819038 -186218120 - L1PA13 LINE L1 -4250 3351 984 367 294 20 6 chr3 31819985 31820187 -186216971 - L1ME4a LINE L1 -237 5884 5679 1134 275 115 15 chr3 31820433 31820895 -186216263 + LTR33 LTR ERVL 12 519 -2 332 337 81 50 chr3 31821090 31821376 -186215782 - L1ME4a LINE L1 -1087 5059 4754 1859 147 0 7 chr3 31821376 31821661 -186215497 - AluJb SINE Alu -29 283 1 332 337 81 50 chr3 31821661 31821792 -186215366 - L1ME4a LINE L1 -1392 4754 4629 266 260 32 8 chr3 31821822 31821945 -186215213 - L1ME4a LINE L1 -1542 4604 4479 27 29 0 0 chr3 31822330 31822364 -186214794 + AT_rich Low_complexity Low_complexity 1 34 0 1988 131 0 13 chr3 31822532 31822830 -186214328 - AluSx SINE Alu -18 294 1 2329 111 0 6 chr3 31824708 31825023 -186212135 - AluSq SINE Alu 0 313 1 596 284 74 8 chr3 31825046 31825289 -186211869 + MIR SINE MIR 3 259 -3 1017 221 142 27 chr3 31825453 31825820 -186211338 + MER20B DNA MER1_type 144 552 -231 627 228 158 6 chr3 31825831 31825989 -186211169 + MER5A DNA MER1_type 8 189 0 21 0 0 0 chr3 31826012 31826033 -186211125 + AT_rich Low_complexity Low_complexity 1 21 0 310 158 226 14 chr3 31826035 31826181 -186210977 + MER20B DNA MER1_type 605 781 -2 1650 87 0 5 chr3 31826640 31826847 -186210311 - AluY SINE Alu -18 293 88 426 316 63 13 chr3 31827468 31827626 -186209532 + MIR3 SINE MIR 38 203 -5 2177 142 129 5 chr3 31827743 31828124 -186209034 + MSTA LTR MaLR 1 428 0 4770 144 10 15 chr3 31828365 31829145 -186208013 - LTR39 LTR ERV1 -7 776 1 243 335 75 12 chr3 31829314 31829475 -186207683 + L1MC4 LINE L1 5571 5741 -2067 646 142 14 28 chr3 31829536 31829677 -186207481 - L1MC4 LINE L1 0 8042 7904 201 176 0 0 chr3 31829679 31829713 -186207445 + (TA)n Simple_repeat Simple_repeat 2 35 0 323 278 11 11 chr3 31829713 31829803 -186207355 + L1MC4 LINE L1 6614 6703 -1339 414 175 19 48 chr3 31829854 31829936 -186207222 - L1MC4 LINE L1 -377 7665 7582 3168 134 118 60 chr3 31829936 31830169 -186206989 + LTR62 LTR ERVK 1 219 -500 2697 13 0 0 chr3 31830169 31830468 -186206690 + AluY SINE Alu 1 299 -12 3168 134 118 60 chr3 31830468 31830531 -186206627 + LTR62 LTR ERVK 219 277 -442 201 39 0 0 chr3 31830531 31830557 -186206601 + (CAGCC)n Simple_repeat Simple_repeat 3 28 0 3168 134 118 60 chr3 31830557 31830829 -186206329 + LTR62 LTR ERVK 277 618 -101 2444 77 3 0 chr3 31830829 31831139 -186206019 - AluY SINE Alu 0 311 1 3168 134 118 60 chr3 31831139 31831247 -186205911 + LTR62 LTR ERVK 618 718 -1 414 175 19 48 chr3 31831247 31831267 -186205891 - L1MC4 LINE L1 -460 7582 7566 1001 165 0 0 chr3 31831267 31831425 -186205733 - FRAM SINE Alu -17 159 2 353 99 9 207 chr3 31831426 31831456 -186205702 - L1MC4 LINE L1 -468 7574 7540 1763 166 0 14 chr3 31831456 31831740 -186205418 + AluJb SINE Alu 3 282 -30 353 99 9 207 chr3 31831740 31831820 -186205338 - L1MC4 LINE L1 -502 7540 7486 412 246 48 0 chr3 31831903 31832029 -186205129 - LTR33 LTR ERVL -2 519 388 648 256 28 28 chr3 31832164 31832375 -186204783 - LTR33 LTR ERVL -308 213 3 211 298 18 0 chr3 31834511 31834568 -186202590 - L2 LINE L2 -7 3265 3208 2035 151 0 0 chr3 31834701 31835005 -186202153 - AluSx SINE Alu -8 304 1 203 302 19 126 chr3 31836768 31836927 -186200231 + L3 LINE CR1 84 225 -1352 1098 160 13 13 chr3 31836950 31837187 -186199971 - MER33 DNA MER1_type -56 268 32 342 259 59 12 chr3 31838543 31838628 -186198530 - MER91A DNA MER1_type -49 147 59 2072 134 0 25 chr3 31838709 31839029 -186198129 + AluSx SINE Alu 1 312 0 296 283 253 6 chr3 31839042 31839208 -186197950 + L2 LINE L2 3008 3214 -99 1896 173 3 3 chr3 31839475 31839782 -186197376 + AluSx SINE Alu 1 307 -5 401 326 168 24 chr3 31839986 31840277 -186196881 + L2 LINE L2 2925 3257 -15 299 291 134 15 chr3 31840290 31840424 -186196734 + L3 LINE CR1 523 672 -905 948 152 68 115 chr3 31841294 31841492 -186195666 + MER33 DNA MER1_type 17 196 -2389 1935 184 7 0 chr3 31841492 31841801 -186195357 + AluJb SINE Alu 2 312 0 948 152 68 115 chr3 31841801 31841925 -186195233 + MER33 DNA MER1_type 196 324 0 1223 279 39 3 chr3 31841986 31842345 -186194813 + LTR16C LTR ERVL 107 478 -13 2139 134 0 10 chr3 31842359 31842531 -186194627 - AluSx SINE Alu -8 304 135 309 26 0 0 chr3 31842531 31842569 -186194589 + (TG)n Simple_repeat Simple_repeat 1 38 0 2139 134 0 10 chr3 31842569 31842703 -186194455 - AluSx SINE Alu -177 135 1 330 320 8 31 chr3 31842729 31842857 -186194301 - MIR SINE MIR -133 129 5 1151 184 181 52 chr3 31842982 31843214 -186193944 + MLT1F1 LTR MaLR 3 204 -363 1297 143 65 154 chr3 31843214 31843565 -186193593 + MLT1B LTR MaLR 1 309 -81 1879 149 11 3 chr3 31843565 31843847 -186193311 + AluJb SINE Alu 1 284 -28 1297 143 65 154 chr3 31843847 31843923 -186193235 + MLT1B LTR MaLR 309 390 0 1151 184 181 52 chr3 31843923 31844220 -186192938 + MLT1F1 LTR MaLR 204 567 0 213 39 0 0 chr3 31844293 31844319 -186192839 + (TAA)n Simple_repeat Simple_repeat 2 27 0 19241 84 9 2 chr3 31844741 31847712 -186189446 + L1PA6 LINE L1 2483 5476 -678 19874 110 23 14 chr3 31848956 31852158 -186185000 + L1P LINE L1 11 3242 -2904 1892 84 4 4 chr3 31852299 31852560 -186184598 + L1PA6 LINE L1 5893 6153 -1 653 307 34 57 chr3 31853211 31853599 -186183559 - L2 LINE L2 -2 3311 2933 240 326 47 0 chr3 31855292 31855378 -186181780 + MIR SINE MIR 167 256 -6 1955 165 54 34 chr3 31855808 31856274 -186180884 + Charlie1b DNA MER1_type 1 475 -48 2202 109 36 6 chr3 31856275 31856633 -186180525 - L1PB1 LINE L1 0 6867 6499 209 153 18 45 chr3 31856640 31856751 -186180407 + (TA)n Simple_repeat Simple_repeat 1 108 0 226 171 43 14 chr3 31856776 31856846 -186180312 + (TA)n Simple_repeat Simple_repeat 2 73 0 13106 156 58 8 chr3 31856854 31861171 -186175987 - L1PB1 LINE L1 -369 6498 1731 2240 151 28 8 chr3 31861171 31861528 -186175630 + THE1B LTR MaLR 1 364 0 13106 156 58 8 chr3 31861528 31863348 -186173810 - L1PB1 LINE L1 -5136 1731 4 233 193 0 35 chr3 31863358 31863415 -186173743 + Charlie1b DNA MER1_type 465 519 -4 23 0 0 0 chr3 31863773 31863796 -186173362 + AT_rich Low_complexity Low_complexity 1 23 0 1445 216 9 15 chr3 31863831 31864164 -186172994 - MLT1A1 LTR MaLR 0 365 35 460 277 69 27 chr3 31864190 31864450 -186172708 - L1ME4a LINE L1 -1 6120 5850 283 262 56 24 chr3 31864554 31864680 -186172478 - LTR67 LTR ERVL 0 557 428 370 302 63 13 chr3 31865866 31866025 -186171133 - MIR SINE MIR -55 207 41 426 39 0 0 chr3 31866368 31866420 -186170738 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 365 235 31 53 chr3 31866599 31866797 -186170361 - L1MC4a LINE L1 -60 7748 6090 323 259 51 57 chr3 31866807 31866965 -186170193 - L1ME4a LINE L1 -176 5945 5789 569 343 78 28 chr3 31866974 31867370 -186169788 - L1ME4a LINE L1 -440 5681 5266 192 152 0 0 chr3 31867780 31867813 -186169345 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 238 359 97 0 chr3 31867828 31867931 -186169227 - L2 LINE L2 0 3272 3160 755 278 34 5 chr3 31868026 31868235 -186168923 + L2 LINE L2 2541 2755 -559 458 139 48 11 chr3 31868241 31868355 -186168803 - MLT1E LTR MaLR -8 643 501 947 239 47 109 chr3 31868370 31868967 -186168191 + L2 LINE L2 2755 3312 -1 209 347 61 0 chr3 31868976 31869074 -186168084 - L2 LINE L2 -256 3057 2954 800 267 32 14 chr3 31869104 31869117 -186168041 - MIR SINE MIR -36 226 215 2508 80 0 0 chr3 31869117 31869429 -186167729 - AluSq SINE Alu -1 312 1 800 267 32 14 chr3 31869429 31869636 -186167522 - MIR SINE MIR -47 215 2 508 327 88 33 chr3 31869642 31869948 -186167210 - L2 LINE L2 -359 2955 2633 21 57 0 0 chr3 31869983 31870018 -186167140 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr3 31870081 31870109 -186167049 + AT_rich Low_complexity Low_complexity 1 28 0 2154 208 22 38 chr3 31870257 31870413 -186166745 - L1MB8 LINE L1 -6 6172 6015 2208 114 7 3 chr3 31870413 31870711 -186166447 + AluSg SINE Alu 2 300 -10 2154 208 22 38 chr3 31870711 31871140 -186166018 - L1MB8 LINE L1 -163 6015 5592 675 255 58 0 chr3 31872008 31872196 -186164962 - L1ME LINE L1 -461 5709 5511 884 221 89 48 chr3 31872274 31872292 -186164866 + L1ME3A LINE L1 5762 5778 -392 1556 202 40 8 chr3 31872292 31872644 -186164514 - MLT1A1 LTR MaLR 0 365 3 884 221 89 48 chr3 31872644 31873018 -186164140 + L1ME3A LINE L1 5778 6170 0 1963 139 0 0 chr3 31873046 31873334 -186163824 - AluJb SINE Alu -3 309 22 21 0 0 0 chr3 31873399 31873420 -186163738 + AT_rich Low_complexity Low_complexity 1 21 0 261 209 88 81 chr3 31873643 31873791 -186163367 - L1ME LINE L1 -1511 4635 4487 414 0 0 0 chr3 31874091 31874137 -186163021 + (TG)n Simple_repeat Simple_repeat 2 47 0 448 303 83 25 chr3 31874155 31874482 -186162676 - L1MC4a LINE L1 -1934 5874 5529 31 0 0 0 chr3 31874909 31874940 -186162218 + AT_rich Low_complexity Low_complexity 1 31 0 361 224 0 24 chr3 31875139 31875224 -186161934 - MIR SINE MIR 0 262 180 749 213 132 30 chr3 31876476 31876673 -186160485 - MER20 DNA MER1_type 0 219 3 666 219 88 19 chr3 31876850 31877055 -186160103 + L1ME3 LINE L1 5943 6161 -1 617 321 11 11 chr3 31878597 31878787 -186158371 - L2 LINE L2 0 3313 3124 243 132 0 0 chr3 31879059 31879097 -186158061 + MLT1L LTR MaLR 164 201 -414 346 244 59 34 chr3 31879099 31879218 -186157940 + MLT1K LTR MaLR 162 283 -305 194 321 82 66 chr3 31879630 31879826 -186157332 - L2 LINE L2 -260 3053 2855 * 514 355 18 0 chr3 31879794 31880011 -186157147 + MIR SINE MIR 15 235 -27 192 256 0 0 chr3 31881116 31881159 -186155999 + MIR SINE MIR 50 92 -170 558 317 13 35 chr3 31881174 31881404 -186155754 - MIR SINE MIR 0 262 38 247 248 171 0 chr3 31881694 31881799 -186155359 + MLT2F LTR ERVL 532 654 -9 1552 273 50 37 chr3 31881804 31882220 -186154938 - L2 LINE L2 -97 3216 2784 782 223 114 5 chr3 31882220 31882422 -186154736 + MER58A DNA MER1_type 1 224 0 1552 273 50 37 chr3 31882422 31882753 -186154405 - L2 LINE L2 -529 2784 2459 930 186 11 6 chr3 31882900 31883077 -186154081 - MER5B DNA MER1_type 0 178 1 1313 282 19 14 chr3 31884034 31884463 -186152695 - LTR16B LTR ERVL 0 464 34 807 308 73 64 chr3 31884811 31885346 -186151812 + L2 LINE L2 1560 2099 -1215 276 250 40 10 chr3 31885452 31885552 -186151606 - MER20 DNA MER1_type -17 202 100 236 343 21 0 chr3 31885573 31885713 -186151445 - LTR16A1 LTR ERVL -10 447 305 207 0 0 0 chr3 31885783 31885806 -186151352 + (TG)n Simple_repeat Simple_repeat 2 24 0 1911 226 88 17 chr3 31886822 31887345 -186149813 + MLT1F1 LTR MaLR 6 565 -2 25 65 0 0 chr3 31887666 31887712 -186149446 + AT_rich Low_complexity Low_complexity 1 46 0 2460 54 17 0 chr3 31888683 31888979 -186148179 - AluY SINE Alu -8 303 3 21 57 0 0 chr3 31889130 31889165 -186147993 + AT_rich Low_complexity Low_complexity 1 35 0 2064 142 0 10 chr3 31889545 31889854 -186147304 + AluSx SINE Alu 7 312 0 189 0 0 0 chr3 31890813 31890834 -186146324 + (TG)n Simple_repeat Simple_repeat 2 22 0 22 35 0 0 chr3 31890836 31890865 -186146293 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 31891188 31891210 -186145948 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr3 31891314 31891334 -186145824 + (T)n Simple_repeat Simple_repeat 1 20 0 188 313 16 0 chr3 31893532 31893596 -186143562 + L2 LINE L2 3183 3247 -66 1311 208 24 37 chr3 31893732 31894026 -186143132 + AluJb SINE Alu 2 291 -21 247 241 264 6 chr3 31895177 31895351 -186141807 - MER112 DNA MER1_type -40 220 2 283 298 304 11 chr3 31896108 31896289 -186140869 - L3 LINE CR1 -13 1564 1331 659 283 79 16 chr3 31896996 31897492 -186139666 - MLT1G1 LTR MaLR 0 595 1 191 365 54 0 chr3 31897670 31897744 -186139414 - L2 LINE L2 -40 3232 3155 1053 368 103 15 chr3 31897811 31898550 -186138608 - L3 LINE CR1 -488 1089 286 1781 202 33 33 chr3 31898576 31899061 -186138097 - L1ME1 LINE L1 -38 6128 5644 551 271 42 24 chr3 31899336 31899502 -186137656 - MIR SINE MIR -15 247 79 2094 200 86 11 chr3 31900531 31901087 -186136071 - L1ME2 LINE L1 -9 6155 5558 1634 186 73 133 chr3 31902257 31902874 -186134284 + MER119 DNA MER1_type 4 583 0 356 226 361 0 chr3 31903109 31903242 -186133916 + MER5A DNA MER1_type 9 189 0 1020 202 44 88 chr3 31903503 31903890 -186133268 + MLT1A2 LTR MaLR 5 374 0 477 291 57 34 chr3 31904022 31904197 -186132961 - MER5A DNA MER1_type -6 183 5 294 330 39 0 chr3 31904991 31905094 -186132064 - MIR SINE MIR -65 143 37 303 234 13 130 chr3 31905126 31905280 -186131878 - MIR SINE MIR -4 258 123 764 223 48 11 chr3 31905341 31905529 -186131629 + LTR41 LTR ERVL 1 195 -578 406 265 114 65 chr3 31905951 31906196 -186130962 + LTR41 LTR ERVL 510 766 -7 2600 110 3 16 chr3 31906314 31906688 -186130470 - L1PB1 LINE L1 0 6151 5783 254 264 23 0 chr3 31906706 31906793 -186130365 - L1MC4 LINE L1 -1339 6703 6615 252 273 23 0 chr3 31906794 31906882 -186130276 - L1MC4 LINE L1 -1339 6703 6614 288 250 23 0 chr3 31906894 31906982 -186130176 - L1MC4 LINE L1 -1339 6703 6614 249 234 29 16 chr3 31906904 31907009 -186130149 + L1MC4 LINE L1 1996 6983 -1339 * 6482 172 8 3 chr3 31907022 31908784 -186128374 - L1P5 LINE L1 -371 5780 4013 325 281 148 16 chr3 31908871 31908999 -186128159 - L2 LINE L2 -3 3269 3125 212 353 144 29 chr3 31909269 31909408 -186127750 + MIR3 SINE MIR 33 187 -21 21 36 0 0 chr3 31909908 31909936 -186127222 + AT_rich Low_complexity Low_complexity 1 28 0 225 368 11 0 chr3 31910011 31910098 -186127060 + MIR SINE MIR 15 102 -160 1885 133 59 3 chr3 31910411 31910697 -186126461 + AluSx SINE Alu 1 302 -10 192 300 108 39 chr3 31910905 31911035 -186126123 + L2 LINE L2 2511 2649 -665 403 138 0 0 chr3 31911035 31911093 -186126065 + MADE1 DNA Mariner 1 58 -22 311 290 11 0 chr3 31911096 31911225 -186125933 + CT-rich Low_complexity Low_complexity 1 130 0 213 413 0 0 chr3 31911272 31911410 -186125748 + C-rich Low_complexity Low_complexity 1 138 0 356 300 0 0 chr3 31911457 31911577 -186125581 + C-rich Low_complexity Low_complexity 1 120 0 739 285 76 57 chr3 31912066 31912558 -186124600 - MLT1G1 LTR MaLR -4 545 1 185 365 54 0 chr3 31912736 31912810 -186124348 - L2 LINE L2 -40 3232 3155 989 368 103 15 chr3 31912877 31913616 -186123542 - L3 LINE CR1 -488 1089 286 1993 189 37 39 chr3 31913642 31914128 -186123030 - L1ME1 LINE L1 -38 6128 5644 533 265 42 24 chr3 31914403 31914569 -186122589 - MIR SINE MIR -15 247 79 2326 189 90 14 chr3 31915598 31916154 -186121004 - L1ME2 LINE L1 -9 6155 5558 767 277 118 0 chr3 31917325 31917545 -186119613 + MER119 DNA MER1_type 4 249 -334 7835 38 1 2 chr3 31919580 31920789 -186116369 + L1PA4 LINE L1 4945 6154 -1 4006 32 6 8 chr3 31920870 31921363 -186115795 + L1P LINE L1 4138 4629 -1517 440 282 42 28 chr3 31923045 31923187 -186113971 - MIR SINE MIR -117 145 2 466 319 84 11 chr3 31923327 31923518 -186113640 - MIR SINE MIR -47 215 11 27 29 0 0 chr3 31924248 31924282 -186112876 + AT_rich Low_complexity Low_complexity 1 34 0 316 261 45 8 chr3 31924656 31924790 -186112368 + L1MB8 LINE L1 4466 4604 -1542 1595 191 24 7 chr3 31924949 31925247 -186111911 + AluJb SINE Alu 1 303 -9 22 42 0 0 chr3 31925274 31925298 -186111860 + AT_rich Low_complexity Low_complexity 1 24 0 253 397 32 19 chr3 31925486 31925642 -186111516 - L3 LINE CR1 -74 1503 1346 200 200 0 22 chr3 31925879 31925924 -186111234 + GA-rich Low_complexity Low_complexity 4 47 0 320 210 19 25 chr3 31925951 31926108 -186111050 + GA-rich Low_complexity Low_complexity 4 159 0 1595 215 36 26 chr3 31926961 31927351 -186109807 + L1MB8 LINE L1 5623 6016 -162 9195 82 13 0 chr3 31927496 31928738 -186108420 - L1P LINE L1 -1156 4990 3733 4055 124 196 14 chr3 31928867 31929198 -186107960 - L1PBa LINE L1 -4444 2419 2150 2409 151 28 8 chr3 31929198 31929555 -186107603 + THE1B LTR MaLR 1 364 0 4055 124 196 14 chr3 31929555 31930068 -186107090 - L1PBa LINE L1 -4713 2150 1421 253 260 180 20 chr3 31931473 31931573 -186105585 - MLT1K LTR MaLR -3 585 470 422 139 12 0 chr3 31931587 31931673 -186105485 + CT-rich Low_complexity Low_complexity 2 88 0 243 202 85 11 chr3 31931760 31931854 -186105304 + MLT1A1 LTR MaLR 1 101 -264 234 286 0 0 chr3 31932163 31932219 -186104939 + L3 LINE CR1 1317 1372 -205 1815 103 77 7 chr3 31932310 31932583 -186104575 + AluSx SINE Alu 1 292 -20 816 273 80 0 chr3 31933296 31933532 -186103626 + MER119 DNA MER1_type 111 365 -218 553 77 26 0 chr3 31933532 31933610 -186103548 - MADE1 DNA Mariner 0 80 1 1074 172 18 23 chr3 31933610 31933831 -186103327 + MER119 DNA MER1_type 364 583 0 343 227 375 0 chr3 31934066 31934194 -186102964 + MER5A DNA MER1_type 9 184 -5 314 266 39 23 chr3 31935036 31935164 -186101994 + MIR SINE MIR 78 207 -55 1363 209 45 35 chr3 31936832 31937202 -186099956 + MLT1G LTR MaLR 155 590 0 28835 33 8 0 chr3 31987493 31991750 -186045408 + L1PA4 LINE L1 1860 6152 -3 198 231 115 64 chr3 31991938 31992016 -186045142 - MIR SINE MIR -83 125 44 180 286 0 41 chr3 31992155 31992204 -186044954 - L3b LINE CR1 -25 1558 1512 478 314 49 29 chr3 31992430 31992675 -186044483 + MER102b DNA MER1_type 89 338 -3 183 100 0 0 chr3 31992755 31992785 -186044373 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 9857 58 3 1 chr3 31993304 31994561 -186042597 - L1P LINE L1 -4264 1882 623 769 52 0 0 chr3 31994559 31994656 -186042502 - L1P LINE L1 -6048 98 2 * 204 284 172 37 chr3 31995319 31995453 -186041705 - MIR3 SINE MIR -2 206 55 532 276 24 0 chr3 31995489 31995612 -186041546 - MER58A DNA MER1_type 0 126 1 3131 134 60 6 chr3 31995690 31996190 -186040968 + MER1A DNA MER1_type 1 527 0 4108 162 151 82 chr3 31997122 31998403 -186038755 - Charlie1a DNA MER1_type -82 1373 5 845 223 0 0 chr3 31998475 31998641 -186038517 - FRAM SINE Alu -7 169 4 200 109 0 43 chr3 31999991 32000037 -186037121 + (TAAAAA)n Simple_repeat Simple_repeat 5 48 0 556 236 0 24 chr3 32000629 32000756 -186036402 - FLAM_A SINE Alu -9 124 1 365 282 0 0 chr3 32001116 32001194 -186035964 - L2 LINE L2 -7 3265 3188 376 223 182 104 chr3 32001426 32001510 -186035648 - MIR SINE MIR -19 243 167 2293 93 3 0 chr3 32001510 32001799 -186035359 - AluSq SINE Alu -23 290 1 376 223 182 104 chr3 32001799 32001934 -186035224 - MIR SINE MIR -95 167 7 1720 167 20 29 chr3 32002312 32002451 -186034707 + AluSx SINE Alu 1 140 -172 2402 66 0 0 chr3 32002451 32002739 -186034419 + AluY SINE Alu 21 308 -3 1720 167 20 29 chr3 32002739 32002905 -186034253 + AluSx SINE Alu 140 303 -9 21 36 0 0 chr3 32003113 32003141 -186034017 + AT_rich Low_complexity Low_complexity 1 28 0 309 307 83 73 chr3 32003299 32003491 -186033667 + MER91A DNA MER1_type 2 195 -1 1785 142 0 50 chr3 32003500 32003818 -186033340 - AluJo SINE Alu -10 302 1 33 56 0 0 chr3 32003837 32003891 -186033267 + AT_rich Low_complexity Low_complexity 1 54 0 576 195 0 31 chr3 32003982 32004110 -186033048 + FLAM_A SINE Alu 13 136 -6 375 232 246 7 chr3 32004114 32004252 -186032906 + MER5A DNA MER1_type 19 189 0 240 330 0 0 chr3 32005271 32005359 -186031799 - L1MC5 LINE L1 -71 7890 7803 1759 154 29 4 chr3 32005442 32005722 -186031436 + L1MA3 LINE L1 17 303 -7262 7312 193 43 29 chr3 32005831 32008592 -186028566 + L1MA3 LINE L1 3709 6429 -1295 1466 171 57 18 chr3 32008592 32008873 -186028285 + AluSx SINE Alu 1 292 -20 7312 193 43 29 chr3 32008873 32009602 -186027556 + L1MA3 LINE L1 6429 7445 -279 183 42 0 0 chr3 32009602 32009626 -186027532 + (TA)n Simple_repeat Simple_repeat 2 25 0 7312 193 43 29 chr3 32009626 32009904 -186027254 + L1MA3 LINE L1 7445 7717 -7 180 77 0 0 chr3 32010060 32010086 -186027072 + (TAA)n Simple_repeat Simple_repeat 2 27 0 24 53 0 0 chr3 32010266 32010304 -186026854 + AT_rich Low_complexity Low_complexity 1 38 0 605 213 122 6 chr3 32010651 32010815 -186026343 - MER5A DNA MER1_type 0 189 7 1527 142 35 91 chr3 32010818 32011136 -186026022 - AluJo SINE Alu -12 300 1 1526 254 80 3 chr3 32012085 32012474 -186024684 + MLT1G1 LTR MaLR 167 585 -10 603 184 0 0 chr3 32012629 32012732 -186024426 + AluJb SINE Alu 194 296 -16 1622 179 7 49 chr3 32013064 32013372 -186023786 + AluJo SINE Alu 1 295 -17 1040 324 135 4 chr3 32013914 32014387 -186022771 + L3 LINE CR1 1028 1562 -15 1804 147 28 7 chr3 32015196 32015481 -186021677 + AluSx SINE Alu 1 291 -21 849 296 75 13 chr3 32016531 32016916 -186020242 + LTR16B LTR ERVL 56 464 0 5268 139 51 68 chr3 32016935 32017289 -186019869 + Ricksha_a DNA DNA 1 360 -2901 330 183 70 0 chr3 32017289 32017360 -186019798 - FRAM/FAM SINE Alu -92 83 8 5268 139 51 68 chr3 32017360 32018172 -186018986 + Ricksha_a DNA DNA 360 1177 -14 458 123 49 0 chr3 32018437 32018518 -186018640 + L1MB8 LINE L1 6089 6173 -5 1883 152 10 20 chr3 32018625 32018928 -186018230 + AluSx SINE Alu 1 300 -12 521 307 40 31 chr3 32019436 32019664 -186017494 - MIR SINE MIR -2 260 31 1668 186 158 47 chr3 32020135 32020623 -186016535 - MLT1F LTR MaLR 0 542 1 259 325 52 0 chr3 32020667 32020744 -186016414 + MER91C DNA MER1_type 58 138 -2 867 269 53 16 chr3 32021520 32021765 -186015393 + MIR SINE MIR 6 259 -3 1127 238 77 62 chr3 32022001 32022530 -186014628 - L2 LINE L2 -265 3007 2475 388 206 165 0 chr3 32022543 32022640 -186014518 + L2 LINE L2 3200 3312 -1 30 69 0 0 chr3 32023633 32023691 -186013467 + GC_rich Low_complexity Low_complexity 1 58 0 22 35 0 0 chr3 32023796 32023825 -186013333 + GC_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr3 32023910 32023938 -186013220 + GC_rich Low_complexity Low_complexity 1 28 0 2159 133 0 3 chr3 32024406 32024707 -186012451 - AluJb SINE Alu -12 300 1 2130 92 11 0 chr3 32026053 32026334 -186010824 + AluSp SINE Alu 16 299 -14 21 95 0 0 chr3 32026459 32026522 -186010636 + AT_rich Low_complexity Low_complexity 1 63 0 890 202 6 27 chr3 32026571 32026754 -186010404 + AluJo SINE Alu 34 212 -100 191 330 41 21 chr3 32026828 32026925 -186010233 - L2 LINE L2 -1 3271 3173 1217 176 30 102 chr3 32027015 32027157 -186010001 + AluJb SINE Alu 1 113 -199 2384 69 0 47 chr3 32027157 32027477 -186009681 + AluY SINE Alu 1 305 -6 1217 176 30 102 chr3 32027477 32027629 -186009529 + AluJb SINE Alu 113 274 -38 244 325 305 0 chr3 32028265 32028416 -186008742 + MIR SINE MIR 50 246 -16 2330 109 0 0 chr3 32030584 32030896 -186006262 - AluSx SINE Alu 0 312 1 1423 179 10 76 chr3 32031468 32031770 -186005388 + AluJo SINE Alu 1 282 -30 1996 245 190 18 chr3 32031892 32032720 -186004438 - L2 LINE L2 -19 3294 2258 26 0 0 0 chr3 32032739 32032765 -186004393 + AT_rich Low_complexity Low_complexity 1 26 0 211 200 92 46 chr3 32033937 32034002 -186003156 + L2 LINE L2 3238 3305 -8 1423 180 27 14 chr3 32034128 32034423 -186002735 + L1MB7 LINE L1 5867 6165 -19 1739 161 42 25 chr3 32034759 32035113 -186002045 + MER46B DNA MER2_type 2 236 0 25 65 0 0 chr3 32036010 32036056 -186001102 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr3 32036110 32036133 -186001025 + AT_rich Low_complexity Low_complexity 1 23 0 663 153 181 0 chr3 32036486 32036630 -186000528 - MIR SINE MIR -3 259 90 1133 255 177 60 chr3 32037535 32038695 -185998463 + L2 LINE L2 2006 3310 -3 220 312 21 32 chr3 32040109 32040202 -185996956 + MIR SINE MIR 137 228 -34 1770 176 7 183 chr3 32040602 32041274 -185995884 - MLT2B3 LTR ERVL 0 554 1 505 190 141 0 chr3 32041401 32041543 -185995615 - MLT1F1 LTR MaLR 0 542 381 300 171 91 11 chr3 32041553 32041641 -185995517 + L1MA9 LINE L1 6218 6312 0 1161 244 34 93 chr3 32041642 32042081 -185995077 - MLT1F1 LTR MaLR -154 413 1 652 168 8 32 chr3 32042546 32042671 -185994487 + FLAM_C SINE Alu 2 123 -10 4715 49 3 23 chr3 32042807 32043416 -185993742 - L1PA5 LINE L1 -4 6150 5554 326 263 136 25 chr3 32043473 32043591 -185993567 + MIR3 SINE MIR 38 168 -40 25 31 0 0 chr3 32043663 32043695 -185993463 + AT_rich Low_complexity Low_complexity 1 32 0 875 96 103 0 chr3 32043696 32043832 -185993326 - L1MA2 LINE L1 -11 6293 6144 2673 122 39 2 chr3 32043833 32044244 -185992914 + MSTA LTR MaLR 3 428 0 1335 143 104 11 chr3 32044244 32044531 -185992627 - L1MA3 LINE L1 -49 6256 5943 * 19788 143 46 49 chr3 32044526 32045330 -185991828 - L1M4 LINE L1 -2952 4613 3808 2206 112 7 0 chr3 32045330 32045626 -185991532 - AluSc SINE Alu -11 298 1 19788 143 46 49 chr3 32045626 32046076 -185991082 - L1M4 LINE L1 -3757 3808 3358 1826 179 0 3 chr3 32046076 32046373 -185990785 - AluJb SINE Alu -16 296 1 19788 143 46 49 chr3 32046373 32049413 -185987745 - L1M4 LINE L1 -4207 3358 225 2110 117 57 23 chr3 32049413 32049765 -185987393 - THE1B LTR MaLR 0 364 1 19788 143 46 49 chr3 32049765 32049983 -185987175 - L1M4 LINE L1 -7340 225 8 25 0 0 0 chr3 32050093 32050118 -185987040 + AT_rich Low_complexity Low_complexity 1 25 0 875 132 0 0 chr3 32050126 32050247 -185986911 - AluJb SINE Alu -32 280 160 2110 114 35 67 chr3 32050395 32050771 -185986387 - THE1B LTR MaLR 0 364 1 24 32 0 0 chr3 32051132 32051163 -185985995 + AT_rich Low_complexity Low_complexity 1 31 0 180 77 0 0 chr3 32051178 32051204 -185985954 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 326 256 0 12 chr3 32051386 32051472 -185985686 - MIR SINE MIR -14 248 164 1911 134 62 7 chr3 32051492 32051784 -185985374 + AluSx SINE Alu 3 310 -2 728 145 357 21 chr3 32052319 32052560 -185984598 - L1MB8 LINE L1 -5 6173 5852 403 217 17 100 chr3 32052621 32052801 -185984357 - L1M4b LINE L1 -5634 1225 1061 1089 173 51 101 chr3 32052808 32053236 -185983922 - MLT1C LTR MaLR -1 466 3 537 332 63 10 chr3 32053501 32053802 -185983356 - L1M4b LINE L1 -6542 317 1 247 235 35 96 chr3 32054535 32054650 -185982508 - MIR3 SINE MIR -18 190 83 22 0 0 0 chr3 32054849 32054871 -185982287 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 32054950 32054972 -185982186 + AT_rich Low_complexity Low_complexity 1 22 0 320 216 72 84 chr3 32055039 32055206 -185981952 - MIR SINE MIR -6 256 92 942 219 54 0 chr3 32055397 32055621 -185981537 + MER46A DNA MER2_type 1 236 0 278 345 104 49 chr3 32055650 32055937 -185981221 + L2 LINE L2 2970 3272 0 2162 115 3 0 chr3 32058006 32058311 -185978847 - AluSx SINE Alu -6 306 1 3507 57 7 0 chr3 32058616 32059071 -185978087 - L1PA5 LINE L1 -1 6153 5696 1760 162 10 33 chr3 32060046 32060348 -185976810 - AluJb SINE Alu -15 297 3 986 204 0 0 chr3 32060774 32060946 -185976212 + FAM SINE Alu 1 172 -3 664 192 23 8 chr3 32062487 32062617 -185974541 - FLAM_A SINE Alu 0 133 2 2539 74 0 0 chr3 32063560 32063871 -185973287 + AluY SINE Alu 1 311 0 244 250 0 0 chr3 32064403 32064447 -185972711 + Alu SINE Alu 141 184 -116 490 115 103 11 chr3 32064447 32064534 -185972624 + L1PA8 LINE L1 6078 6172 0 25 83 0 0 chr3 32065189 32065249 -185971909 + AT_rich Low_complexity Low_complexity 1 60 0 1432 172 84 0 chr3 32065491 32065741 -185971417 + AluJb SINE Alu 13 283 -29 1860 155 10 16 chr3 32065769 32066079 -185971079 + AluJb SINE Alu 1 308 -4 4526 159 31 42 chr3 32066260 32067233 -185969925 - L1MA9 LINE L1 -4 6308 5339 1483 194 17 24 chr3 32067233 32067526 -185969632 - AluJo SINE Alu -19 293 3 4526 159 31 42 chr3 32067526 32067860 -185969298 - L1MA9 LINE L1 -973 5339 5003 434 260 158 25 chr3 32068940 32069136 -185968022 - MIR SINE MIR 0 262 41 258 143 0 0 chr3 32069283 32069332 -185967826 + (A)n Simple_repeat Simple_repeat 1 49 0 181 301 157 53 chr3 32069804 32070219 -185966939 - L2 LINE L2 -1297 2017 1560 7224 35 5 0 chr3 32070669 32071598 -185965560 - L1P LINE L1 -3570 2576 1643 21428 30 2 0 chr3 32071598 32074317 -185962841 + L1P LINE L1 2584 5307 -839 189 0 0 0 chr3 32075101 32075122 -185962036 + (T)n Simple_repeat Simple_repeat 1 21 0 3690 95 147 132 chr3 32076109 32076919 -185960239 - LTR12 LTR ERV1 0 826 5 1918 192 75 24 chr3 32076935 32077508 -185959650 - pTR5 LTR ERV1 -1094 1344 743 1642 218 71 51 chr3 32077567 32077619 -185959539 - MLT2B1 LTR ERVL 0 520 470 189 0 0 0 chr3 32077619 32077640 -185959518 + (GA)n Simple_repeat Simple_repeat 2 22 0 1642 218 71 51 chr3 32077640 32078097 -185959061 - MLT2B1 LTR ERVL -50 470 1 771 159 115 50 chr3 32078143 32078206 -185958952 + MER6B DNA MER2_type 2 59 -806 2351 44 44 14 chr3 32078206 32078502 -185958656 + AluY SINE Alu 1 305 -6 771 159 115 50 chr3 32078502 32078620 -185958538 + MER6B DNA MER2_type 59 195 -15 745 70 0 20 chr3 32078754 32078854 -185958304 + HY3 scRNA scRNA 1 98 -3 201 138 0 0 chr3 32078854 32078883 -185958275 + (TATG)n Simple_repeat Simple_repeat 3 31 0 206 281 31 31 chr3 32079227 32079291 -185957867 + polypyrimidine Low_complexity Low_complexity 2 65 0 1533 142 36 44 chr3 32079340 32079614 -185957544 - AluJb SINE Alu -40 272 1 306 283 42 60 chr3 32079675 32079841 -185957317 - L1ME LINE L1 -390 5731 5569 189 300 0 0 chr3 32079929 32079979 -185957179 - MIR SINE MIR -73 189 140 * 457 299 148 42 chr3 32079978 32080541 -185956617 - L2 LINE L2 -10 3303 2668 597 75 0 0 chr3 32081061 32081141 -185956017 - AluY SINE Alu -230 80 1 227 200 20 0 chr3 32081195 32081245 -185955913 - MIR SINE MIR -30 232 182 420 319 93 0 chr3 32081258 32081462 -185955696 - MIR SINE MIR -38 224 2 1563 139 41 30 chr3 32082050 32082316 -185954842 - AluJo SINE Alu -19 293 25 2185 113 0 7 chr3 32083680 32083981 -185953177 - AluSx SINE Alu -13 299 1 183 352 68 0 chr3 32084174 32084262 -185952896 - L2 LINE L2 -8 3264 3171 311 309 36 9 chr3 32084542 32084652 -185952506 + L1ME LINE L1 5320 5432 -730 247 357 16 0 chr3 32085526 32085655 -185951503 + CT-rich Low_complexity Low_complexity 2 132 0 203 274 0 32 chr3 32089599 32089661 -185947497 + L2 LINE L2 3231 3290 -23 411 139 0 38 chr3 32089663 32089681 -185947477 - AluJ/FRAM SINE Alu -6 306 289 956 207 13 17 chr3 32089681 32089913 -185947245 - L1MB7 LINE L1 -9 6175 5945 411 139 0 38 chr3 32089913 32089973 -185947185 - AluJ/FRAM SINE Alu -23 289 231 343 156 300 11 chr3 32089973 32090063 -185947095 - FLAM_C SINE Alu -2 131 16 815 121 18 36 chr3 32090068 32090233 -185946925 - L1MB7 LINE L1 -211 5967 5806 611 153 89 25 chr3 32090340 32090497 -185946661 - L1MB7 LINE L1 -361 5823 5657 22 0 0 0 chr3 32092876 32092898 -185944260 + AT_rich Low_complexity Low_complexity 1 22 0 206 266 0 47 chr3 32093026 32093090 -185944068 + L2 LINE L2 3207 3267 -46 569 263 93 76 chr3 32093299 32093389 -185943769 + MIR SINE MIR 5 92 -170 1719 151 55 17 chr3 32093389 32093680 -185943478 - AluJo SINE Alu -10 302 1 569 263 93 76 chr3 32093680 32093825 -185943333 + MIR SINE MIR 92 244 -18 244 256 13 0 chr3 32094731 32094809 -185942349 + HsTC2 DNA Tc2 1 79 -1819 22 0 0 0 chr3 32094945 32094967 -185942191 + AT_rich Low_complexity Low_complexity 1 22 0 1424 197 27 24 chr3 32096247 32096542 -185940616 - AluJo SINE Alu -6 296 1 384 262 142 62 chr3 32096810 32097035 -185940123 - HAL1 LINE L1 -84 2423 2181 201 310 42 14 chr3 32097982 32098053 -185939105 - MIR3 SINE MIR -26 182 110 24 32 0 0 chr3 32100552 32100583 -185936575 + AT_rich Low_complexity Low_complexity 1 31 0 1038 172 86 75 chr3 32103282 32103625 -185933533 - L1MB7 LINE L1 -8 6176 5836 1689 108 0 0 chr3 32103625 32103848 -185933310 - AluSq SINE Alu -15 298 76 1038 172 86 75 chr3 32103848 32103874 -185933284 - L1MB7 LINE L1 -348 5836 5812 3226 153 73 28 chr3 32103879 32104349 -185932809 - L1MA4 LINE L1 -2 6169 5610 2026 140 45 25 chr3 32104349 32104706 -185932452 + THE1B LTR MaLR 1 364 0 3226 153 73 28 chr3 32104706 32105007 -185932151 - L1MA4 LINE L1 -561 5610 5324 1072 144 18 6 chr3 32105015 32105175 -185931983 - AluSg/x SINE Alu -16 294 130 2142 132 13 0 chr3 32105175 32105478 -185931680 - AluSx SINE Alu -5 307 1 3979 179 44 32 chr3 32105488 32106502 -185930656 - L1MA4 LINE L1 -825 5321 4296 3441 197 26 33 chr3 32106732 32107597 -185929561 - L1 LINE L1 -1119 5027 4163 3071 194 58 22 chr3 32107597 32108726 -185928432 - L1MC2 LINE L1 -343 5823 4135 2137 128 3 0 chr3 32108834 32109138 -185928020 - AluSx SINE Alu -7 305 1 428 200 0 67 chr3 32109409 32109499 -185927659 - AluS SINE Alu -229 84 1 565 244 14 156 chr3 32112131 32112253 -185924905 - MIR SINE MIR -6 256 193 1376 98 0 10 chr3 32112253 32112456 -185924702 - L1PB1 LINE L1 -1 6150 5950 565 244 14 156 chr3 32112456 32112608 -185924550 - MIR SINE MIR -69 193 21 850 201 111 5 chr3 32112665 32112854 -185924304 + MER3 DNA MER1_type 1 209 0 196 300 88 25 chr3 32113248 32113328 -185923830 - MIR SINE MIR -84 124 40 305 349 104 52 chr3 32113429 32113460 -185923698 + L3 LINE CR1 1168 1196 -381 2334 101 0 3 chr3 32113460 32113767 -185923391 + AluSq SINE Alu 1 306 -7 305 349 104 52 chr3 32113767 32114082 -185923076 + L3 LINE CR1 1196 1532 -45 3147 209 50 71 chr3 32114423 32115271 -185921887 - MER21B LTR ERV1 -30 833 4 369 330 95 23 chr3 32117589 32117810 -185919348 + MIR SINE MIR 20 256 -6 1679 167 3 24 chr3 32118078 32118365 -185918793 - AluJo SINE Alu -31 281 1 1532 214 62 8 chr3 32118521 32118876 -185918282 + MLT1A2 LTR MaLR 1 374 0 197 194 0 119 chr3 32118990 32119057 -185918101 - L2 LINE L2 0 3272 3214 1249 286 49 22 chr3 32119749 32120408 -185916750 + LTR51 LTR ERV1 1 851 -72 22 35 0 0 chr3 32120743 32120772 -185916386 + AT_rich Low_complexity Low_complexity 1 29 0 319 256 47 0 chr3 32121932 32122018 -185915140 + L2 LINE L2 3220 3309 -4 30 27 0 0 chr3 32122985 32123022 -185914136 + AT_rich Low_complexity Low_complexity 1 37 0 200 259 24 47 chr3 32124496 32124581 -185912577 + MIR3 SINE MIR 123 205 -3 1554 154 109 27 chr3 32124585 32124923 -185912235 + MER47A DNA MER2_type 1 366 0 2323 90 3 0 chr3 32124962 32125261 -185911897 - AluSx SINE Alu -12 300 1 252 172 0 0 chr3 32127310 32127368 -185909790 - L1M4 LINE L1 -3834 2312 2255 1088 236 86 72 chr3 32127560 32128179 -185908979 - L2 LINE L2 -6 3307 2677 193 338 15 0 chr3 32128248 32128316 -185908842 + MIR3 SINE MIR 133 201 -7 1467 171 80 11 chr3 32128451 32128726 -185908432 - AluJb SINE Alu -16 296 3 405 0 0 0 chr3 32128974 32129019 -185908139 + (TG)n Simple_repeat Simple_repeat 1 45 0 283 392 20 14 chr3 32130109 32130257 -185906901 - MIR SINE MIR -94 168 20 435 19 0 0 chr3 32130436 32130489 -185906669 - MADE1 DNA Mariner 0 80 28 1771 157 3 20 chr3 32131840 32132133 -185905025 - AluJo SINE Alu -24 288 1 32 0 0 0 chr3 32132416 32132448 -185904710 + AT_rich Low_complexity Low_complexity 1 32 0 2008 140 3 3 chr3 32133157 32133457 -185903701 + AluJb SINE Alu 1 300 -12 476 341 115 69 chr3 32133633 32134313 -185902845 - L2 LINE L2 0 3272 2568 4557 206 102 34 chr3 32134536 32135846 -185901312 + L1MC4a LINE L1 6404 7803 -5 185 333 16 56 chr3 32136320 32136446 -185900712 - MIR SINE MIR -110 152 32 418 261 183 7 chr3 32137546 32137699 -185899459 - MIR SINE MIR 0 262 83 1175 171 50 0 chr3 32138486 32138685 -185898473 - AluJb SINE Alu -15 297 89 2029 127 14 0 chr3 32139592 32139884 -185897274 + AluSx SINE Alu 1 296 -16 1093 201 149 19 chr3 32139949 32140257 -185896901 - L1ME3A LINE L1 -80 6090 5743 551 204 24 108 chr3 32140927 32141094 -185896064 + AluJo SINE Alu 58 210 -102 24 0 0 0 chr3 32141116 32141140 -185896018 + AT_rich Low_complexity Low_complexity 1 24 0 202 196 65 0 chr3 32141146 32141192 -185895966 + L2 LINE L2 3224 3272 0 4924 54 2 0 chr3 32143403 32144011 -185893147 + L1PA6 LINE L1 5543 6151 -3 216 0 0 0 chr3 32144144 32144168 -185892990 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 367 22 0 0 chr3 32144270 32144316 -185892842 + L1PA6 LINE L1 6107 6152 -2 35609 43 2 3 chr3 32145543 32149962 -185887196 + L1P LINE L1 3 4418 -1728 752 189 24 0 chr3 32150062 32150226 -185886932 - L1P LINE L1 -844 5302 5135 362 316 47 23 chr3 32150545 32150716 -185886442 + L2 LINE L2 3138 3312 -1 33 0 0 0 chr3 32151314 32151347 -185885811 + AT_rich Low_complexity Low_complexity 1 33 0 197 321 0 0 chr3 32152081 32152137 -185885021 + MIR SINE MIR 49 104 -158 22 35 0 0 chr3 32152415 32152444 -185884714 + AT_rich Low_complexity Low_complexity 1 29 0 1694 166 28 7 chr3 32152923 32153207 -185883951 + AluJb SINE Alu 1 290 -22 186 103 0 0 chr3 32153631 32153660 -185883498 + (CA)n Simple_repeat Simple_repeat 2 30 0 300 295 160 19 chr3 32153879 32154035 -185883123 + MLT1I LTR MaLR 44 221 -188 270 232 64 56 chr3 32154036 32154161 -185882997 + MLT1J2 LTR MaLR 272 397 -53 * 410 148 0 74 chr3 32154159 32154240 -185882918 - Charlie3 DNA MER1_type -8 2702 2628 305 209 15 0 chr3 32154243 32154310 -185882848 + MLT1I LTR MaLR 340 407 -2 7304 31 10 0 chr3 32155670 32157307 -185879851 - L1PA3 LINE L1 -3 6152 4503 443 151 32 54 chr3 32158042 32158135 -185879023 - Tigger4(Zombi) DNA MER2_type 0 2731 2641 236 288 72 36 chr3 32158506 32158617 -185878541 - MIR SINE MIR -62 146 32 4925 226 35 13 chr3 32158983 32160251 -185876907 + L1P LINE L1 2437 3731 -2415 5290 136 19 1 chr3 32160430 32161263 -185875895 + L1PB2 LINE L1 5302 6149 -2 429 365 23 8 chr3 32161501 32161764 -185875394 + L1PA12 LINE L1 2 268 -7313 2569 247 10 22 chr3 32162326 32163019 -185874139 + L1P LINE L1 1730 2414 -3732 1714 187 0 17 chr3 32165171 32165465 -185871693 - AluJb SINE Alu -23 289 1 307 313 30 0 chr3 32165872 32165971 -185871187 + L1ME3 LINE L1 6004 6105 -57 2224 109 3 0 chr3 32165972 32166265 -185870893 + AluSx SINE Alu 3 296 -16 258 349 143 0 chr3 32167236 32167362 -185869796 + MIR SINE MIR 118 261 -1 3210 189 118 24 chr3 32167656 32168408 -185868750 - MER21B LTR ERV1 -24 839 17 3755 170 81 1 chr3 32168858 32169564 -185867594 - L1PA16 LINE L1 -2 6164 5403 * 6253 193 14 7 chr3 32169562 32170814 -185866344 - L1PA16 LINE L1 -1192 4954 3694 33000 34 4 0 chr3 32170983 32175687 -185861471 - L1PA3 LINE L1 -84 6071 1356 278 207 164 69 chr3 32177057 32177173 -185859985 - MER94 DNA DNA -3 131 5 556 203 32 16 chr3 32178150 32178273 -185858885 - FLAM_A SINE Alu -4 138 14 452 273 200 19 chr3 32180986 32181191 -185855967 + MIR SINE MIR 21 262 0 216 0 0 0 chr3 32181590 32181614 -185855544 + (A)n Simple_repeat Simple_repeat 1 24 0 22 35 0 0 chr3 32181674 32181703 -185855455 + AT_rich Low_complexity Low_complexity 1 29 0 294 254 127 26 chr3 32181974 32182163 -185854995 - MER113 DNA MER1_type? -313 208 1 213 77 0 51 chr3 32182573 32182597 -185854561 + (TTTA)n Simple_repeat Simple_repeat 3 26 -13 3718 16 0 0 chr3 32182597 32183024 -185854134 - L1PA2 LINE L1 0 6155 5729 213 77 0 51 chr3 32183024 32183038 -185854120 + (TTTA)n Simple_repeat Simple_repeat 26 39 0 384 316 198 4 chr3 32183075 32183312 -185853846 - L2 LINE L2 -218 3095 2813 1469 180 10 27 chr3 32183583 32183878 -185853280 - AluJo SINE Alu -22 290 1 2181 119 3 0 chr3 32185532 32185834 -185851324 - AluSx SINE Alu -9 303 1 194 346 97 30 chr3 32186264 32186501 -185850657 - L2 LINE L2 -467 2847 2595 364 359 65 0 chr3 32186599 32186769 -185850389 - L2 LINE L2 -955 2359 2179 819 224 42 0 chr3 32187350 32187515 -185849643 - AluJo/FRAM SINE Alu -7 305 134 1886 157 0 3 chr3 32187516 32187816 -185849342 - AluJb SINE Alu -13 299 1 2158 105 10 7 chr3 32187888 32188192 -185848966 - AluSg SINE Alu -5 305 1 1014 181 6 0 chr3 32188279 32188450 -185848708 - AluSg/x SINE Alu -8 302 131 1746 168 83 6 chr3 32189473 32189812 -185847346 - MLT1A1 LTR MaLR 0 365 1 28 29 0 0 chr3 32192010 32192045 -185845113 + AT_rich Low_complexity Low_complexity 1 35 0 2387 88 10 0 chr3 32192074 32192380 -185844778 + AluSg SINE Alu 1 309 -1 1001 219 55 52 chr3 32193466 32194175 -185842983 + LTR1B LTR ERV1 1 824 -2 518 269 35 51 chr3 32194338 32194535 -185842623 - MIR SINE MIR -1 261 68 28 29 0 0 chr3 32194920 32194955 -185842203 + AT_rich Low_complexity Low_complexity 1 35 0 191 196 174 0 chr3 32195613 32195659 -185841499 - L2 LINE L2 0 3272 3219 472 242 18 147 chr3 32195724 32195959 -185841199 + MIR SINE MIR 19 219 -43 305 315 195 31 chr3 32196124 32196636 -185840522 - L2 LINE L2 -205 3067 2454 285 350 114 24 chr3 32196650 32196746 -185840412 - L2 LINE L2 -2940 374 288 922 222 5 5 chr3 32196746 32196935 -185840223 + MER5A DNA MER1_type 1 189 0 285 350 114 24 chr3 32196935 32197031 -185840127 - L2 LINE L2 -3026 288 202 1291 223 75 6 chr3 32197031 32197349 -185839809 + MER58B DNA MER1_type 2 341 0 285 350 114 24 chr3 32197349 32197444 -185839714 - L2 LINE L2 -3112 202 60 226 284 11 57 chr3 32197810 32197898 -185839260 + L1ME LINE L1 2 85 -5985 443 181 0 67 chr3 32199653 32199846 -185837312 + (TA)n Simple_repeat Simple_repeat 1 180 0 822 213 63 86 chr3 32199888 32200156 -185837002 + MIR SINE MIR 1 262 0 901 252 56 46 chr3 32200760 32201133 -185836025 - L1ME3A LINE L1 -51 6119 5743 2291 106 0 0 chr3 32201380 32201683 -185835475 + AluSx SINE Alu 1 303 -9 2062 172 22 101 chr3 32202302 32203034 -185834124 - MER44D DNA MER2_type -3 602 2 779 168 0 0 chr3 32203689 32203820 -185833338 - FLAM_A SINE Alu -2 131 1 315 0 0 0 chr3 32203959 32203994 -185833164 + (CA)n Simple_repeat Simple_repeat 2 36 0 212 200 18 0 chr3 32204121 32204176 -185832982 + CT-rich Low_complexity Low_complexity 2 57 0 758 317 124 20 chr3 32204177 32204619 -185832539 - L2 LINE L2 -1 3312 2825 312 275 127 65 chr3 32204689 32204918 -185832240 - MIR SINE MIR -15 247 5 986 150 0 7 chr3 32205046 32205199 -185831959 - AluSg/x SINE Alu -26 284 133 2331 88 13 0 chr3 32205200 32205505 -185831653 - AluSx SINE Alu -3 309 1 2003 111 56 10 chr3 32206890 32207178 -185829980 + AluSx SINE Alu 1 301 -11 352 325 100 0 chr3 32208542 32208702 -185828456 + MIR SINE MIR 49 224 -38 229 294 59 0 chr3 32208722 32208807 -185828351 - MIR3 SINE MIR -116 92 3 408 281 101 30 chr3 32209641 32209840 -185827318 + MIR SINE MIR 1 213 -49 522 103 0 0 chr3 32210964 32211042 -185826116 + (TG)n Simple_repeat Simple_repeat 2 79 0 1761 210 32 41 chr3 32213534 32214000 -185823158 - MLT1C LTR MaLR 0 467 6 226 356 11 0 chr3 32215580 32215667 -185821491 + MIR SINE MIR 60 147 -115 851 211 23 0 chr3 32216623 32216794 -185820364 + MER5A DNA MER1_type 1 175 -14 1574 50 0 0 chr3 32216913 32217112 -185820046 + L1PA4 LINE L1 5954 6152 -3 399 344 131 26 chr3 32217341 32217760 -185819398 + L2 LINE L2 2810 3272 0 905 129 0 0 chr3 32218339 32218471 -185818687 - MSTA LTR MaLR -296 132 1 1673 203 58 0 chr3 32218554 32218880 -185818278 + MLT1A1 LTR MaLR 19 363 -2 615 225 88 50 chr3 32219261 32219501 -185817657 - MER112 DNA MER1_type -4 256 8 4016 48 2 2 chr3 32219651 32220151 -185817007 - L1PA7 LINE L1 -1 6153 5654 4129 185 13 14 chr3 32220151 32221027 -185816131 - L1P LINE L1 -4190 1956 1082 226 115 33 16 chr3 32221221 32221282 -185815876 + C-rich Low_complexity Low_complexity 1 62 0 12513 92 18 31 chr3 32221314 32223280 -185813878 - L1P3 LINE L1 -4483 1978 11 584 81 0 23 chr3 32223280 32223366 -185813792 - AluSq/x SINE Alu -166 146 63 1528 185 0 50 chr3 32223742 32224044 -185813114 - AluJo SINE Alu -15 297 11 185 167 0 0 chr3 32224309 32224339 -185812819 + MER5B DNA MER1_type 25 54 -124 432 341 8 0 chr3 32224437 32224560 -185812598 + L2 LINE L2 3149 3272 0 332 271 47 54 chr3 32224928 32225057 -185812101 + L2 LINE L2 3176 3303 -10 224 337 0 24 chr3 32225111 32225194 -185811964 + MIR3 SINE MIR 127 207 -1 246 343 148 50 chr3 32225679 32225956 -185811202 + L3 LINE CR1 1230 1533 -44 2197 134 40 13 chr3 32226092 32226255 -185810903 + L1PB4 LINE L1 5699 5856 -300 1776 98 8 4 chr3 32226255 32226491 -185810667 - AluSq SINE Alu -76 237 1 2197 134 40 13 chr3 32226491 32226699 -185810459 + L1PB4 LINE L1 5856 6080 -76 36 0 0 0 chr3 32226877 32226913 -185810245 + AT_rich Low_complexity Low_complexity 1 36 0 208 304 62 36 chr3 32227004 32227116 -185810042 - L2 LINE L2 -178 3135 3021 435 231 138 50 chr3 32227118 32227278 -185809880 - Charlie8 DNA MER1_type -2152 265 92 676 264 205 23 chr3 32227379 32227682 -185809476 + L3 LINE CR1 1216 1573 -4 474 206 109 59 chr3 32229770 32230008 -185807150 - L1MC5 LINE L1 -48 7913 7664 294 315 34 55 chr3 32230044 32230190 -185806968 + MIR3 SINE MIR 49 191 -17 1357 190 125 31 chr3 32230196 32230517 -185806641 + L1MCa LINE L1 1 351 -6075 * 4728 160 56 22 chr3 32230513 32231918 -185805240 + L1MCa LINE L1 696 2241 -4185 1336 195 0 38 chr3 32231922 32232189 -185804969 + AluJb SINE Alu 1 257 -55 5347 246 44 17 chr3 32232189 32233477 -185803681 + L1MCa LINE L1 2244 3611 -2815 1174 168 188 8 chr3 32233477 32233733 -185803425 + AluJb SINE Alu 1 302 0 5347 246 44 17 chr3 32233733 32234414 -185802744 + L1MCa LINE L1 3611 4272 -2154 859 249 25 8 chr3 32234430 32234667 -185802491 + L1MCa LINE L1 4393 4633 -1793 1015 166 0 0 chr3 32234673 32234830 -185802328 - AluSg/x SINE Alu -19 291 135 257 318 30 0 chr3 32234936 32235002 -185802156 + MIR SINE MIR 12 79 -183 234 258 61 0 chr3 32235025 32235091 -185802067 - L1M4 LINE L1 -1911 4235 4166 739 190 51 0 chr3 32235125 32235283 -185801875 + MIR SINE MIR 97 262 0 1624 191 33 7 chr3 32235302 32235606 -185801552 - AluJo SINE Alu 0 312 1 274 315 98 71 chr3 32235626 32235810 -185801348 - MER5A DNA MER1_type 0 189 1 21 0 0 0 chr3 32237250 32237271 -185799887 + AT_rich Low_complexity Low_complexity 1 21 0 28 86 0 0 chr3 32237616 32237686 -185799472 + AT_rich Low_complexity Low_complexity 1 70 0 330 276 0 35 chr3 32237899 32237986 -185799172 - L2 LINE L2 -1 3312 3229 24 91 0 0 chr3 32239332 32239398 -185797760 + AT_rich Low_complexity Low_complexity 1 66 0 235 256 22 78 chr3 32240115 32240205 -185796953 - MIR SINE MIR -108 154 70 1990 221 58 2 chr3 32240207 32240618 -185796540 - LTR53 LTR ERVL -1 518 85 2017 155 9 15 chr3 32240629 32240965 -185796193 - MER1B DNA MER1_type -5 334 1 505 191 12 0 chr3 32240966 32241050 -185796108 - LTR53 LTR ERVL -434 85 1 458 207 0 0 chr3 32241368 32241455 -185795703 + AluJ/FRAM SINE Alu 214 300 -12 480 354 45 3 chr3 32241809 32242102 -185795056 + L2 LINE L2 2770 3082 -231 585 232 59 38 chr3 32242123 32242312 -185794846 + MIR SINE MIR 59 250 -12 196 281 141 25 chr3 32243066 32243187 -185793971 - L2 LINE L2 -460 2854 2720 31 0 0 0 chr3 32244742 32244773 -185792385 + AT_rich Low_complexity Low_complexity 1 31 0 2127 122 0 13 chr3 32244775 32245078 -185792080 + AluSg SINE Alu 1 299 -11 800 150 0 0 chr3 32245080 32245193 -185791965 - AluJo/FLAM SINE Alu -199 113 1 2318 53 0 60 chr3 32246024 32246343 -185790815 + AluY SINE Alu 1 300 -11 22 35 0 0 chr3 32246586 32246615 -185790543 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr3 32247073 32247097 -185790061 + AT_rich Low_complexity Low_complexity 1 24 0 21 82 0 0 chr3 32247677 32247726 -185789432 + AT_rich Low_complexity Low_complexity 1 49 0 1436 339 82 57 chr3 32248761 32250389 -185786769 - HERVL LTR ERVL -310 5344 3676 231 189 0 19 chr3 32250765 32250818 -185786340 + FAM SINE Alu 124 175 0 309 282 106 69 chr3 32250852 32251097 -185786061 - HERVL LTR ERVL -2539 3115 2862 479 291 134 49 chr3 32251240 32251584 -185785574 - HERVL LTR ERVL -2804 2681 2309 628 269 30 8 chr3 32251591 32251775 -185785383 - HERVL LTR ERVL -2939 2057 1889 370 261 114 23 chr3 32251893 32252069 -185785089 + L2 LINE L2 3118 3309 -4 253 200 0 0 chr3 32252133 32252188 -185784970 + HsTC2 DNA Tc2 3 57 -1841 1021 244 109 20 chr3 32252243 32252645 -185784513 + HsTC2 DNA Tc2 1287 1900 0 296 363 12 0 chr3 32252662 32252742 -185784416 - MER91A DNA MER1_type 0 196 116 370 261 114 23 chr3 32254635 32254811 -185782347 + L2 LINE L2 3118 3309 -4 253 200 0 0 chr3 32254875 32254930 -185782228 + HsTC2 DNA Tc2 3 57 -1841 1068 242 110 18 chr3 32254985 32255386 -185781772 + HsTC2 DNA Tc2 1287 1900 0 296 363 12 0 chr3 32255403 32255483 -185781675 - MER91A DNA MER1_type 0 196 116 839 189 99 11 chr3 32257774 32257965 -185779193 + MER3 DNA MER1_type 1 208 -1 26 30 0 0 chr3 32258166 32258199 -185778959 + AT_rich Low_complexity Low_complexity 1 33 0 427 163 59 43 chr3 32258538 32258648 -185778510 + L1MC3 LINE L1 6212 6319 -1458 494 196 152 0 chr3 32258648 32258760 -185778398 + FLAM_A SINE Alu 2 130 -3 427 163 59 43 chr3 32258760 32258776 -185778382 + L1MC3 LINE L1 6319 7777 0 312 338 21 28 chr3 32258930 32259072 -185778086 - MIR SINE MIR -121 141 1 24 67 0 0 chr3 32261713 32261758 -185775400 + AT_rich Low_complexity Low_complexity 1 45 0 8586 127 16 11 chr3 32262768 32262964 -185774194 - Tigger1 DNA MER2_type -7 2411 2218 1409 163 101 11 chr3 32262964 32263240 -185773918 + AluJo SINE Alu 1 301 -11 8586 127 16 11 chr3 32263240 32264460 -185772698 - Tigger1 DNA MER2_type -200 2218 987 663 129 17 0 chr3 32264939 32265055 -185772103 - Tigger1 DNA MER2_type -1429 989 872 1312 167 42 0 chr3 32265055 32265271 -185771887 - AluJb SINE Alu -14 298 74 4251 171 32 33 chr3 32265271 32265920 -185771238 - Tigger1 DNA MER2_type -1537 881 233 333 0 0 0 chr3 32265920 32265957 -185771201 + (TGG)n Simple_repeat Simple_repeat 1 37 0 2263 68 14 0 chr3 32265965 32266245 -185770913 - AluY SINE Alu -27 284 1 4251 171 32 33 chr3 32266245 32266468 -185770690 - Tigger1 DNA MER2_type -2192 226 1 243 159 159 16 chr3 32267933 32267996 -185769162 + MIR SINE MIR 111 182 -80 266 265 22 96 chr3 32268194 32268330 -185768828 - L2 LINE L2 -212 3060 2935 21 57 0 0 chr3 32268349 32268384 -185768774 + AT_rich Low_complexity Low_complexity 1 35 0 181 182 0 0 chr3 32268505 32268538 -185768620 - MIR SINE MIR -110 152 120 549 211 154 57 chr3 32270352 32270527 -185766631 + MIR SINE MIR 63 254 -8 380 266 7 56 chr3 32272239 32272382 -185764776 + MIR SINE MIR 77 212 -50 557 269 59 63 chr3 32272597 32272835 -185764323 - MIR SINE MIR -2 260 24 29 47 0 0 chr3 32273631 32273674 -185763484 + AT_rich Low_complexity Low_complexity 1 43 0 2298 110 0 3 chr3 32274083 32274393 -185762765 - AluSg SINE Alu 0 310 2 408 301 64 20 chr3 32274927 32275130 -185762028 + MIR SINE MIR 28 239 -23 2035 117 152 11 chr3 32275231 32275606 -185761552 - MSTA LTR MaLR 0 428 1 194 355 43 51 chr3 32275839 32275977 -185761181 + L2 LINE L2 3133 3269 -3 202 259 148 0 chr3 32276128 32276182 -185760976 + MIR SINE MIR 47 108 -154 350 279 153 33 chr3 32276237 32276452 -185760706 + MIR SINE MIR 19 259 -3 212 297 14 27 chr3 32276463 32276537 -185760621 + MIR3 SINE MIR 110 182 -26 745 227 25 17 chr3 32276537 32276820 -185760338 - MLT1A1 LTR MaLR -2 363 1 28 0 0 0 chr3 32278329 32278357 -185758801 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 32278728 32278750 -185758408 + AT_rich Low_complexity Low_complexity 1 22 0 263 290 193 21 chr3 32279905 32280050 -185757108 + MLT1J2 LTR MaLR 82 251 -199 * 706 164 182 36 chr3 32280049 32280179 -185756979 + Charlie4a DNA MER1_type 167 277 -1684 1894 130 20 27 chr3 32280179 32280478 -185756680 - AluJo SINE Alu -15 297 1 706 164 182 36 chr3 32280478 32280627 -185756531 + Charlie4a DNA MER1_type 277 487 -21 5775 82 14 9 chr3 32280964 32281876 -185755282 - L1PB1 LINE L1 -6 6145 5189 283 268 36 113 chr3 32282018 32282186 -185754972 - MIR3 SINE MIR -1 207 53 209 305 0 0 chr3 32282266 32282325 -185754833 + L2 LINE L2 1492 1550 -1764 572 304 144 45 chr3 32282353 32282915 -185754243 + L2 LINE L2 1731 2348 -966 186 286 230 16 chr3 32282939 32283065 -185754093 + L2 LINE L2 2549 2701 -613 1757 201 9 61 chr3 32283080 32283542 -185753616 - LTR47B LTR ERVL 0 443 6 1803 169 23 13 chr3 32283935 32284236 -185752922 + AluJo SINE Alu 1 304 -8 625 267 38 33 chr3 32284925 32285135 -185752023 + L2 LINE L2 3103 3313 0 2132 153 30 6 chr3 32285256 32285622 -185751536 + THE1C LTR MaLR 1 375 0 262 346 60 30 chr3 32285676 32285809 -185751349 - L2 LINE L2 0 3272 3136 1251 183 0 68 chr3 32286291 32286542 -185750616 + AluJb SINE Alu 11 244 -68 6672 180 154 37 chr3 32286559 32288128 -185749030 - MER52A LTR ERV1 0 1755 3 21 0 0 0 chr3 32290180 32290201 -185746957 + AT_rich Low_complexity Low_complexity 1 21 0 232 386 59 0 chr3 32290703 32290804 -185746354 + MIR SINE MIR 20 126 -136 291 278 39 102 chr3 32290858 32291063 -185746095 - MIR SINE MIR -1 261 70 209 333 0 0 chr3 32291011 32291074 -185746084 + MIR SINE MIR 200 262 0 * 199 353 38 49 chr3 32291623 32291807 -185745351 + L2 LINE L2 2871 3052 -220 2490 124 6 0 chr3 32292135 32292497 -185744661 - THE1B LTR MaLR 0 364 1 2087 125 13 20 chr3 32292616 32292921 -185744237 - AluSx SINE Alu -9 303 1 193 0 94 0 chr3 32293050 32293082 -185744076 + A-rich Low_complexity Low_complexity 3 37 0 4685 189 194 82 chr3 32293486 32295065 -185742093 - MER52A LTR ERV1 0 1755 1 751 239 92 14 chr3 32295082 32295300 -185741858 - MIR SINE MIR -21 241 7 209 213 43 0 chr3 32295338 32295385 -185741773 - L2 LINE L2 -2 3270 3222 21 0 0 0 chr3 32295507 32295528 -185741630 + AT_rich Low_complexity Low_complexity 1 21 0 1750 57 8 28 chr3 32295731 32295979 -185741179 - L1PA7 LINE L1 0 6154 5912 2393 134 8 5 chr3 32296627 32297000 -185740158 - MER1A DNA MER1_type 0 529 156 555 139 226 0 chr3 32297172 32297287 -185739871 - MER1A DNA MER1_type -386 141 1 316 266 0 0 chr3 32297316 32297380 -185739778 + MIR SINE MIR 84 147 -61 415 151 32 54 chr3 32297755 32297848 -185739310 + Tigger4(Zombi) DNA MER2_type 2641 2731 0 617 305 124 52 chr3 32298986 32299520 -185737638 - L2 LINE L2 -266 3006 2438 247 307 11 0 chr3 32300228 32300316 -185736842 - MIR SINE MIR -4 258 170 512 148 31 87 chr3 32300340 32300536 -185736622 - Charlie5 DNA MER1_type -1 2611 2427 262 193 70 0 chr3 32300537 32300594 -185736564 - MIR SINE MIR -102 160 100 458 333 18 24 chr3 32301483 32301651 -185735507 - MIR SINE MIR -94 168 2 873 154 82 119 chr3 32301750 32302068 -185735090 - MER33 DNA MER1_type -14 310 5 854 88 35 0 chr3 32302254 32302368 -185734790 - AluSg/x SINE Alu -13 297 180 1258 85 0 18 chr3 32302415 32302579 -185734579 - AluSq SINE Alu -132 181 21 678 275 113 10 chr3 32304027 32304336 -185732822 - L1ME3A LINE L1 -224 5946 5606 1411 147 16 16 chr3 32304336 32304594 -185732564 - Tigger2 DNA MER2_type 0 2718 2461 3722 144 53 21 chr3 32304647 32305368 -185731790 - Tigger2 DNA MER2_type -1974 744 1 579 223 70 42 chr3 32305418 32305689 -185731469 - L1ME3A LINE L1 -613 5549 5254 430 259 74 29 chr3 32305933 32306176 -185730982 - L1ME3A LINE L1 -1478 4668 4415 347 171 0 66 chr3 32306226 32306302 -185730856 + AluSp SINE Alu 137 207 -96 188 293 35 35 chr3 32306750 32306808 -185730350 + L3b LINE CR1 1517 1574 -9 468 325 58 13 chr3 32308296 32308450 -185728708 - MIR SINE MIR -98 164 4 259 239 233 31 chr3 32308916 32309075 -185728083 - MIR SINE MIR -68 194 4 610 349 32 32 chr3 32309085 32309432 -185727726 + L3 LINE CR1 1198 1544 -33 1073 173 14 9 chr3 32310701 32310921 -185726237 - AluSq SINE Alu 0 313 93 32 26 0 0 chr3 32311045 32311084 -185726074 + GC_rich Low_complexity Low_complexity 1 39 0 24 53 0 0 chr3 32311247 32311285 -185725873 + GC_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr3 32311452 32311480 -185725678 + GC_rich Low_complexity Low_complexity 1 28 0 1344 136 31 21 chr3 32311652 32312158 -185725000 - LTR60 LTR ERV1 -3 583 1 2439 203 70 2 chr3 32312158 32312686 -185724472 + L1MD2 LINE L1 5784 6347 -12 566 274 26 13 chr3 32312711 32312912 -185724246 + MIR SINE MIR 12 213 -49 651 261 145 36 chr3 32313015 32313428 -185723730 - L1MEd LINE L1 -2985 3144 2687 551 289 71 16 chr3 32313496 32313807 -185723351 - L1MEd LINE L1 -3528 2601 2274 596 300 51 86 chr3 32313820 32314307 -185722851 - L1MEd LINE L1 -5648 471 2 2348 92 7 0 chr3 32315003 32315308 -185721850 + AluSq SINE Alu 1 307 -6 237 159 0 0 chr3 32315992 32316036 -185721122 + (CTA)n Simple_repeat Simple_repeat 1 44 0 2176 116 3 0 chr3 32316839 32317140 -185720018 - AluSg SINE Alu -8 302 1 189 0 0 0 chr3 32317348 32317369 -185719789 + (T)n Simple_repeat Simple_repeat 1 21 0 327 367 16 27 chr3 32318289 32318477 -185718681 + MIR SINE MIR 23 208 -54 2327 68 7 0 chr3 32318836 32319131 -185718027 - AluY SINE Alu -4 307 11 732 220 108 51 chr3 32319773 32320068 -185717090 + L1MC5 LINE L1 7603 7914 -47 775 159 29 41 chr3 32320114 32320310 -185716848 - MER6 DNA MER2_type -3 862 -62 845 159 0 0 chr3 32323134 32323279 -185713879 - FRAM SINE Alu 0 40 1 2119 108 7 0 chr3 32323471 32323784 -185713374 - AluSg SINE Alu 0 316 2 762 174 6 96 chr3 32323815 32323982 -185713176 - FRAM SINE Alu -30 146 1 819 125 0 16 chr3 32326118 32326246 -185710912 + AluJo SINE Alu 6 131 -181 5905 161 24 10 chr3 32326246 32327746 -185709412 + L1PB3 LINE L1 4094 5625 -529 8291 49 6 0 chr3 32327746 32328709 -185708449 - LTR5 LTR ERVK 0 969 1 5905 161 24 10 chr3 32328709 32329244 -185707914 + L1PB3 LINE L1 5625 6151 -3 2441 90 3 0 chr3 32329544 32329855 -185707303 - AluSp SINE Alu 0 313 2 26 30 0 0 chr3 32329867 32329900 -185707258 + AT_rich Low_complexity Low_complexity 1 33 0 307 247 225 15 chr3 32332568 32332702 -185704456 + MIR SINE MIR 37 190 -72 2136 125 0 0 chr3 32332836 32333131 -185704027 + AluSx SINE Alu 3 297 -15 1081 246 147 14 chr3 32333676 32334022 -185703136 + L1MEc LINE L1 37 428 -5968 536 245 43 93 chr3 32334038 32334340 -185702818 + L1MEc LINE L1 599 885 -5511 1456 204 38 35 chr3 32334897 32335270 -185701888 + MLT1A2 LTR MaLR 1 374 0 832 191 6 0 chr3 32335293 32335450 -185701708 + AluJo SINE Alu 136 293 -19 3521 192 46 97 chr3 32336760 32337448 -185699710 + L1MA9 LINE L1 4270 4991 -1321 948 158 18 23 chr3 32337448 32337619 -185699539 + FRAM SINE Alu 1 164 -12 3521 192 46 97 chr3 32337619 32338003 -185699155 + L1MA9 LINE L1 4991 5393 -919 2007 121 13 3 chr3 32338003 32338301 -185698857 - AluSq SINE Alu -12 301 1 3521 192 46 97 chr3 32338301 32339224 -185697934 + L1MA9 LINE L1 5393 6270 -42 2365 90 7 0 chr3 32339227 32339527 -185697631 - AluSc SINE Alu -7 302 1 32 0 0 0 chr3 32339527 32339559 -185697599 + AT_rich Low_complexity Low_complexity 1 32 0 26 64 0 0 chr3 32339847 32339894 -185697264 + AT_rich Low_complexity Low_complexity 1 47 0 4137 176 82 5 chr3 32339985 32340788 -185696370 - MER6 DNA MER2_type 0 865 1 699 164 9 9 chr3 32341866 32341982 -185695176 + FLAM_A SINE Alu 1 116 -17 1227 160 5 0 chr3 32342442 32342630 -185694528 + AluSg/x SINE Alu 98 286 -26 267 274 0 0 chr3 32342870 32342932 -185694226 + (CATATA)n Simple_repeat Simple_repeat 1 62 0 716 299 58 31 chr3 32343060 32343508 -185693650 - L1ME LINE L1 -310 5811 5352 1650 159 10 45 chr3 32343679 32343993 -185693165 - AluJb SINE Alu -9 303 1 1225 254 100 65 chr3 32345022 32345450 -185691708 + L2 LINE L2 2278 2690 -623 1617 164 4 4 chr3 32345450 32345706 -185691452 - AluJb SINE Alu -56 256 1 1225 254 100 65 chr3 32345706 32346276 -185690882 + L2 LINE L2 2690 3312 -1 385 255 39 10 chr3 32346306 32346408 -185690750 - MIR SINE MIR -110 152 48 3772 46 0 0 chr3 32348356 32348813 -185688345 - L1PA5 LINE L1 -6 6148 5692 2030 148 7 0 chr3 32349099 32349403 -185687755 + AluSx SINE Alu 3 308 -4 199 245 0 0 chr3 32349566 32349615 -185687543 - L2 LINE L2 -2 3311 3263 246 343 40 10 chr3 32349769 32349868 -185687290 - L2 LINE L2 -21 3292 3191 1003 220 19 19 chr3 32349885 32350099 -185687059 - MER20 DNA MER1_type -5 214 1 373 273 33 82 chr3 32350185 32350368 -185686790 - L2 LINE L2 -966 2348 2175 25 0 0 0 chr3 32350612 32350637 -185686521 + AT_rich Low_complexity Low_complexity 1 25 0 327 311 66 9 chr3 32350768 32350874 -185686284 - MIR3 SINE MIR -82 126 15 1529 172 0 68 chr3 32351006 32351314 -185685844 - AluJb SINE Alu -25 287 1 770 130 9 0 chr3 32351440 32351555 -185685603 + AluSq/x SINE Alu 3 118 -195 21 0 0 0 chr3 32351685 32351706 -185685452 + AT_rich Low_complexity Low_complexity 1 21 0 1101 151 17 0 chr3 32351765 32351944 -185685214 + AluSx SINE Alu 62 243 -69 303 28 0 0 chr3 32351959 32351995 -185685163 + (CATA)n Simple_repeat Simple_repeat 1 36 0 1039 285 112 16 chr3 32352377 32352878 -185684280 - L1MC4a LINE L1 -1911 5897 5349 527 260 42 34 chr3 32353018 32353289 -185683869 + L2 LINE L2 2720 3068 -245 180 0 0 0 chr3 32353626 32353646 -185683512 + (TTA)n Simple_repeat Simple_repeat 2 21 0 306 0 0 0 chr3 32354159 32354193 -185682965 + (TG)n Simple_repeat Simple_repeat 2 35 0 260 267 0 0 chr3 32354205 32354280 -185682878 + L1MC4 LINE L1 7892 7966 -76 235 282 64 0 chr3 32354420 32354498 -185682660 - L2 LINE L2 -220 3052 2970 1599 160 19 58 chr3 32354713 32355025 -185682133 + AluJo SINE Alu 1 300 -12 1336 169 0 33 chr3 32358714 32358956 -185678202 - AluJb SINE Alu -11 301 68 380 198 62 0 chr3 32359303 32359384 -185677774 + MIR SINE MIR 147 232 -30 1504 206 18 0 chr3 32359704 32359981 -185677177 - AluJo SINE Alu -30 282 1 911 123 190 0 chr3 32360681 32360745 -185676413 - MER30 DNA MER1_type -36 194 143 207 0 0 0 chr3 32360745 32360768 -185676390 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 911 123 190 0 chr3 32360768 32360866 -185676292 - MER30 DNA MER1_type -87 143 1 2494 53 0 7 chr3 32361167 32361470 -185675688 - AluY SINE Alu -10 301 1 24 0 0 0 chr3 32363257 32363281 -185673877 + AT_rich Low_complexity Low_complexity 1 24 0 488 256 94 19 chr3 32363407 32363567 -185673591 - MIR SINE MIR 0 262 91 262 269 115 29 chr3 32363623 32363727 -185673431 - MIR3 SINE MIR -5 203 91 330 45 0 0 chr3 32363888 32363932 -185673226 + (CA)n Simple_repeat Simple_repeat 2 45 0 1922 178 153 18 chr3 32363940 32364385 -185672773 - MLT1D LTR MaLR 0 505 1 182 191 235 0 chr3 32365501 32365569 -185671589 - L2 LINE L2 -3 3269 3186 21 0 0 0 chr3 32366017 32366038 -185671120 + AT_rich Low_complexity Low_complexity 1 21 0 2288 161 39 0 chr3 32366038 32366449 -185670709 + L1MC/D LINE L1 5316 5742 -617 1327 219 21 21 chr3 32366472 32366759 -185670399 + MER21B LTR ERV1 12 298 -565 2402 19 0 4 chr3 32466831 32467097 -185570061 + AluY SINE Alu 37 301 -10 248 261 165 0 chr3 32467160 32467275 -185569883 + L2 LINE L2 2625 2758 -556 1978 153 0 22 chr3 32467278 32467592 -185569566 - AluSx SINE Alu -5 307 1 1799 176 14 0 chr3 32468265 32468543 -185568615 + AluJo SINE Alu 1 282 -30 2215 122 0 25 chr3 32469197 32469541 -185567617 + AluSx SINE Alu 1 336 0 1868 157 16 0 chr3 32469542 32469848 -185567310 + AluJo SINE Alu 1 311 -1 2587 68 3 0 chr3 32469982 32470291 -185566867 - AluSq SINE Alu -3 310 1 215 163 82 20 chr3 32470507 32470556 -185566602 + L2 LINE L2 3217 3268 -4 377 131 0 0 chr3 32471373 32471434 -185565724 + MER5A DNA MER1_type 2 62 -127 1942 146 43 65 chr3 32471542 32471876 -185565282 + MLT1B LTR MaLR 3 329 -61 2254 85 11 0 chr3 32471876 32472193 -185564965 + AluSp SINE Alu 1 320 0 1942 146 43 65 chr3 32472193 32472254 -185564904 + MLT1B LTR MaLR 329 390 0 443 267 92 24 chr3 32472349 32472555 -185564603 - MIR SINE MIR -41 221 2 261 285 99 10 chr3 32472629 32472746 -185564412 - MIR SINE MIR -67 141 34 22 0 0 0 chr3 32472874 32472896 -185564262 + AT_rich Low_complexity Low_complexity 1 22 0 654 235 31 46 chr3 32473040 32473236 -185563922 + MIR SINE MIR 35 227 -35 180 111 0 0 chr3 32473608 32473635 -185563523 + (TAA)n Simple_repeat Simple_repeat 1 27 0 430 237 70 95 chr3 32473789 32474005 -185563153 + L1MC4a LINE L1 5656 5775 -346 447 54 0 0 chr3 32474005 32474061 -185563097 + L1MB8 LINE L1 6118 6173 -5 430 237 70 95 chr3 32474061 32474110 -185563048 + L1MC4a LINE L1 5775 5824 -297 216 256 137 0 chr3 32474334 32474451 -185562707 - MIR SINE MIR -6 256 124 2156 137 0 7 chr3 32474639 32474945 -185562213 - AluSx SINE Alu -8 304 1 1230 66 48 0 chr3 32474958 32475125 -185562033 - L1MA1 LINE L1 0 6302 6128 200 250 238 0 chr3 32475701 32475785 -185561373 - MIR SINE MIR -6 256 153 550 263 76 15 chr3 32476163 32476361 -185560797 - L2 LINE L2 0 3313 3104 230 204 0 0 chr3 32476440 32476484 -185560674 - L1MC4 LINE L1 -1347 6695 6652 814 236 27 16 chr3 32476500 32476687 -185560471 + MER8 DNA MER2_type 2 239 0 250 293 0 0 chr3 32476687 32476745 -185560413 + (TA)n Simple_repeat Simple_repeat 1 58 0 309 194 145 0 chr3 32476745 32476822 -185560336 - MIR SINE MIR -66 142 64 246 209 0 0 chr3 32477444 32477487 -185559671 + LTR67 LTR ERVL 500 542 -15 244 175 0 0 chr3 32477464 32477504 -185559654 + MLT1K LTR MaLR 549 588 0 * 276 343 64 10 chr3 32477616 32477820 -185559338 - L2 LINE L2 -188 3084 2870 2142 106 7 0 chr3 32477999 32478305 -185558853 - AluSp SINE Alu 0 308 1 1842 129 36 39 chr3 32478305 32478614 -185558544 - AluJo SINE Alu -4 308 1 1456 236 129 14 chr3 32478887 32479362 -185557796 - MLT1E1 LTR MaLR 0 654 62 1841 181 10 0 chr3 32479362 32479655 -185557503 + AluJo SINE Alu 1 296 -16 1456 236 129 14 chr3 32479655 32479725 -185557433 - MLT1E1 LTR MaLR -592 62 1 1075 217 120 124 chr3 32479860 32479953 -185557205 - MLT1D LTR MaLR 0 505 413 1027 172 151 79 chr3 32479953 32480083 -185557075 + AluJo SINE Alu 3 122 -180 2312 95 3 0 chr3 32480083 32480379 -185556779 + AluSp SINE Alu 6 302 -11 1027 172 151 79 chr3 32480379 32480527 -185556631 + AluJo SINE Alu 122 301 -1 1075 217 120 124 chr3 32480527 32480940 -185556218 - MLT1D LTR MaLR -92 413 1 234 0 0 0 chr3 32481341 32481367 -185555791 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2179 111 0 29 chr3 32481454 32481761 -185555397 + AluSx SINE Alu 1 298 -14 21 36 0 0 chr3 32481761 32481789 -185555369 + AT_rich Low_complexity Low_complexity 1 28 0 2443 92 0 0 chr3 32482711 32483017 -185554141 + AluSg1 SINE Alu 1 306 -3 579 217 90 38 chr3 32483194 32483406 -185553752 + MIR SINE MIR 17 239 -23 446 274 196 38 chr3 32483487 32483771 -185553387 + L2 LINE L2 2851 3217 -96 506 209 76 19 chr3 32483771 32483876 -185553282 - MER81 DNA DNA -3 111 1 446 274 196 38 chr3 32483876 32483989 -185553169 + L2 LINE L2 3217 3311 -2 692 201 63 0 chr3 32486964 32487138 -185550020 - MER53 DNA DNA -1 188 4 355 199 46 99 chr3 32487252 32487383 -185549775 - MLT1H LTR MaLR -16 533 416 364 288 24 16 chr3 32487590 32487715 -185549443 + MIR SINE MIR 21 146 -62 873 221 55 106 chr3 32487965 32488381 -185548777 + HAL1 LINE L1 1 395 -2112 * 4177 183 21 11 chr3 32488375 32488675 -185548483 - L1MC/D LINE L1 -608 5736 5440 1924 162 30 0 chr3 32488675 32488978 -185548180 - AluJb SINE Alu 0 312 1 4177 183 21 11 chr3 32488978 32489944 -185547214 - L1MC/D LINE L1 -904 5440 4460 1563 117 160 44 chr3 32489944 32489983 -185547175 - THE1C LTR MaLR 0 375 342 1683 134 8 4 chr3 32489983 32490236 -185546922 + AluSx SINE Alu 55 308 -4 1563 117 160 44 chr3 32490236 32490514 -185546644 - THE1C LTR MaLR -33 342 31 2393 95 0 0 chr3 32490514 32490820 -185546338 + AluY SINE Alu 1 306 -5 1563 117 160 44 chr3 32490820 32490856 -185546302 - THE1C LTR MaLR -344 31 1 4458 204 24 131 chr3 32490856 32491587 -185545571 - L1MC/D LINE L1 -1682 4464 3657 840 165 31 0 chr3 32491587 32491714 -185545444 + FLAM_C SINE Alu 1 131 -12 4458 204 24 131 chr3 32491714 32491950 -185545208 - L1MC/D LINE L1 -2489 3657 3397 2368 99 3 7 chr3 32491950 32492253 -185544905 + AluSp SINE Alu 1 302 -11 4458 204 24 131 chr3 32492253 32492355 -185544803 - L1MC/D LINE L1 -2749 3397 3286 1791 175 0 20 chr3 32492355 32492658 -185544500 - AluJo SINE Alu -13 299 3 4458 204 24 131 chr3 32492658 32492914 -185544244 - L1MC/D LINE L1 -2860 3286 3252 2352 117 0 0 chr3 32492914 32493222 -185543936 - AluSg SINE Alu -2 308 1 4458 204 24 131 chr3 32493222 32493637 -185543521 - L1MC/D LINE L1 -2894 3252 2794 897 165 10 0 chr3 32493657 32493868 -185543290 + CT-rich Low_complexity Low_complexity 1 213 0 960 65 0 40 chr3 32493886 32494010 -185543148 - AluSq/x SINE Alu -194 119 1 596 243 29 0 chr3 32494021 32494161 -185542997 - L1MC/D LINE L1 -3380 2766 2623 22 35 0 0 chr3 32494992 32495021 -185542137 + AT_rich Low_complexity Low_complexity 1 29 0 2161 108 0 0 chr3 32495030 32495309 -185541849 - AluSx SINE Alu -33 279 1 1775 138 54 40 chr3 32495404 32495701 -185541457 + AluSx SINE Alu 1 301 -11 685 225 133 92 chr3 32496571 32496659 -185540499 - MLT1J LTR MaLR -22 489 406 2436 90 0 0 chr3 32496659 32496959 -185540199 + AluSp SINE Alu 2 301 -12 685 225 133 92 chr3 32496959 32497336 -185539822 - MLT1J LTR MaLR -105 406 5 215 31 31 0 chr3 32497824 32497856 -185539302 + (TA)n Simple_repeat Simple_repeat 1 33 0 1506 161 136 13 chr3 32497903 32498220 -185538938 - MLT1A1 LTR MaLR -8 357 2 437 244 41 1 chr3 32498398 32498517 -185538641 - L1ME2 LINE L1 -1 6183 6050 1525 203 17 3 chr3 32498527 32498823 -185538335 + AluJo SINE Alu 1 300 -12 2158 128 0 16 chr3 32498823 32499129 -185538029 + AluSg SINE Alu 1 301 -9 332 207 0 23 chr3 32499159 32499246 -185537912 + GA-rich Low_complexity Low_complexity 2 86 0 2207 121 7 0 chr3 32499250 32499728 -185537430 + AluSg SINE Alu 1 480 0 713 168 20 204 chr3 32499810 32500018 -185537140 - L1ME2 LINE L1 -110 6054 5938 591 202 81 8 chr3 32500018 32500142 -185537016 - FLAM_A SINE Alu 0 133 1 713 168 20 204 chr3 32500142 32500290 -185536868 - L1ME2 LINE L1 -226 5938 5764 196 281 18 0 chr3 32500292 32500349 -185536809 - MIR SINE MIR 0 262 205 2369 111 0 0 chr3 32500727 32501033 -185536125 - AluSg SINE Alu -4 306 1 293 205 8 94 chr3 32501096 32501213 -185535945 - MIR SINE MIR -105 157 51 1947 170 0 0 chr3 32501214 32501526 -185535632 + AluSx SINE Alu 1 312 0 2235 118 0 3 chr3 32502373 32502677 -185534481 - AluSx SINE Alu -9 303 1 579 252 74 26 chr3 32502763 32503106 -185534052 + LTR16A LTR ERVL 21 413 -37 429 238 34 62 chr3 32503271 32503295 -185533863 - MIR SINE MIR -62 146 123 1795 156 3 23 chr3 32503295 32503597 -185533561 - AluJo SINE Alu -16 296 1 429 238 34 62 chr3 32503597 32503750 -185533408 - MIR SINE MIR -85 123 2 2224 110 0 0 chr3 32503924 32504215 -185532943 - AluSx SINE Alu -21 291 1 814 228 46 14 chr3 32504286 32504675 -185532483 - MLT1C LTR MaLR -5 462 1 * 874 183 77 73 chr3 32504675 32504948 -185532210 - LTR37B LTR ERV1 -82 386 113 942 132 5 136 chr3 32504958 32505134 -185532024 + MER3 DNA MER1_type 11 154 -55 1649 186 16 16 chr3 32505134 32505441 -185531717 + AluJb SINE Alu 3 309 -3 942 132 5 136 chr3 32505441 32505484 -185531674 + MER3 DNA MER1_type 154 201 -8 365 224 121 0 chr3 32505484 32505600 -185531558 - LTR37B LTR ERV1 -338 130 1 357 314 70 77 chr3 32505950 32506362 -185530796 - L2 LINE L2 0 3272 2862 2408 89 3 0 chr3 32506362 32506664 -185530494 + AluSq SINE Alu 1 303 -10 357 314 70 77 chr3 32506664 32506719 -185530439 - L2 LINE L2 -410 2862 2808 235 341 66 46 chr3 32506796 32506958 -185530200 - L2 LINE L2 0 3313 3156 912 190 0 18 chr3 32506958 32507121 -185530037 + FRAM SINE Alu 2 161 -5 1605 170 58 11 chr3 32507122 32507398 -185529760 + AluJb SINE Alu 1 289 -23 2291 90 10 3 chr3 32507401 32507700 -185529458 + AluSg SINE Alu 1 301 -9 235 341 66 46 chr3 32507700 32507880 -185529278 - L2 LINE L2 -158 3155 2958 513 242 137 68 chr3 32507954 32508413 -185528745 - L1ME4a LINE L1 -68 6053 5563 259 214 135 79 chr3 32508506 32508595 -185528563 + L2 LINE L2 3199 3292 -21 319 236 143 33 chr3 32509686 32509868 -185527290 + L1MEd LINE L1 965 1166 -4953 2266 110 3 0 chr3 32509882 32510183 -185526975 + AluSx SINE Alu 1 302 -10 650 305 83 52 chr3 32510184 32510207 -185526951 + HAL1 LINE L1 1243 1264 -1243 2083 129 0 7 chr3 32510207 32510509 -185526649 - AluSx SINE Alu -10 302 3 650 305 83 52 chr3 32510509 32510980 -185526178 + HAL1 LINE L1 1264 1752 -755 1784 164 0 30 chr3 32511040 32511344 -185525814 + AluJo SINE Alu 1 295 -17 1878 72 122 11 chr3 32511347 32511610 -185525548 + AluSg1 SINE Alu 1 292 -17 2027 94 44 7 chr3 32511659 32511963 -185525195 + AluSc SINE Alu 1 314 0 1618 129 70 39 chr3 32513924 32514236 -185522922 - AluJb SINE Alu 0 312 1 417 317 35 14 chr3 32514466 32514608 -185522550 - MER96 DNA MER1_type? -28 147 3 1819 158 3 0 chr3 32514970 32515262 -185521896 + AluJo SINE Alu 1 293 -19 23 0 0 0 chr3 32516348 32516371 -185520787 + AT_rich Low_complexity Low_complexity 1 23 0 1997 121 0 22 chr3 32518392 32518706 -185518452 + AluSx SINE Alu 1 307 -5 1678 138 26 35 chr3 32519071 32519382 -185517776 - AluJb SINE Alu -3 309 2 195 42 0 0 chr3 32519482 32519506 -185517652 + (TAA)n Simple_repeat Simple_repeat 1 24 0 248 161 36 0 chr3 32519879 32519935 -185517223 + CT-rich Low_complexity Low_complexity 1 58 0 317 102 51 34 chr3 32520133 32520192 -185516966 + L1MCa LINE L1 1995 2054 -4372 2090 106 0 3 chr3 32520195 32520498 -185516660 - AluSx SINE Alu -10 302 1 973 160 0 0 chr3 32520568 32520718 -185516440 - FRAM SINE Alu -26 150 1 208 293 0 0 chr3 32521579 32521637 -185515521 + GA-rich Low_complexity Low_complexity 1 58 0 519 256 141 6 chr3 32521642 32521840 -185515318 + MIR SINE MIR 8 234 -28 534 256 0 16 chr3 32522276 32522401 -185514757 - MER94 DNA DNA 0 134 12 329 114 0 0 chr3 32522673 32522717 -185514441 - MLT1B LTR MaLR -1 389 346 1192 107 0 0 chr3 32522728 32522896 -185514262 + AluSg/x SINE Alu 129 296 -14 1728 160 17 0 chr3 32522896 32523190 -185513968 - MLT1B LTR MaLR -65 325 27 1262 167 70 22 chr3 32523193 32523463 -185513695 + AluJo SINE Alu 1 283 -29 213 94 0 0 chr3 32523469 32523501 -185513657 + (TA)n Simple_repeat Simple_repeat 2 33 0 297 201 4 65 chr3 32523527 32523595 -185513563 - MER104 DNA Tc2 -1806 92 37 1417 178 0 38 chr3 32523595 32523909 -185513249 + AluJo SINE Alu 1 302 -10 297 201 4 65 chr3 32523909 32523943 -185513215 - MER104 DNA Tc2 -1861 37 2 197 350 18 69 chr3 32524167 32524444 -185512714 + L2 LINE L2 2560 2822 -492 339 44 0 0 chr3 32524820 32524865 -185512293 + (TG)n Simple_repeat Simple_repeat 2 46 0 866 256 16 64 chr3 32524946 32525258 -185511900 + MER102a DNA MER1_type 34 330 0 2097 123 0 0 chr3 32525643 32525944 -185511214 - AluSq SINE Alu -4 309 9 312 290 56 28 chr3 32525988 32526095 -185511063 - MER91C DNA MER1_type -30 110 1 282 29 0 0 chr3 32526106 32526141 -185511017 + (TG)n Simple_repeat Simple_repeat 2 36 0 28 0 0 0 chr3 32526204 32526232 -185510926 + AT_rich Low_complexity Low_complexity 1 28 0 2191 77 0 3 chr3 32526482 32526805 -185510353 - AluY SINE Alu 0 322 1 22 0 0 0 chr3 32526805 32526827 -185510331 + AT_rich Low_complexity Low_complexity 1 22 0 425 231 0 65 chr3 32526831 32526939 -185510219 - MER5A DNA MER1_type -80 109 9 22 0 0 0 chr3 32527035 32527057 -185510101 + AT_rich Low_complexity Low_complexity 1 22 0 1946 114 35 44 chr3 32527057 32527182 -185509976 - L1MB3 LINE L1 -7 6176 6051 1988 135 3 3 chr3 32527182 32527479 -185509679 + AluSx SINE Alu 1 297 -15 1946 114 35 44 chr3 32527479 32527695 -185509463 - L1MB3 LINE L1 -132 6051 5838 1427 174 12 70 chr3 32527703 32528030 -185509128 - AluJb SINE Alu -4 308 1 806 211 73 25 chr3 32528430 32528634 -185508524 - MIR SINE MIR -2 260 47 1194 235 78 16 chr3 32529726 32530045 -185507113 - L1MC4 LINE L1 -138 7904 7566 1178 120 0 11 chr3 32530045 32530220 -185506938 - AluSg/x SINE Alu -14 298 126 1889 106 0 18 chr3 32530221 32530496 -185506662 - AluSg SINE Alu -18 292 23 2007 107 3 7 chr3 32530499 32530790 -185506368 - AluSx SINE Alu -21 291 2 875 238 181 0 chr3 32530798 32531079 -185506079 - L1MC4 LINE L1 -473 7569 7238 335 125 0 198 chr3 32531087 32531123 -185506035 - L1MC4 LINE L1 -966 7076 7069 2287 93 3 0 chr3 32531123 32531434 -185505724 - AluSx SINE Alu 0 312 1 335 125 0 198 chr3 32531434 32531493 -185505665 - L1MC4 LINE L1 -973 7069 7000 2155 93 0 7 chr3 32532226 32532526 -185504632 - AluSx SINE Alu -14 298 1 180 295 11 74 chr3 32532813 32532908 -185504250 + MIR SINE MIR 109 197 -65 2297 101 0 0 chr3 32532927 32533234 -185503924 + AluSq SINE Alu 1 307 -6 484 349 32 24 chr3 32533235 32533484 -185503674 - MIR SINE MIR -2 260 10 245 274 104 96 chr3 32534622 32534757 -185502401 - MIR3 SINE MIR -60 148 13 388 310 21 35 chr3 32534946 32535091 -185502067 + MER91A DNA MER1_type 1 143 -53 309 250 90 20 chr3 32535101 32535201 -185501957 + MER91A DNA MER1_type 86 192 -4 419 267 78 30 chr3 32535206 32535450 -185501708 + MLT1K LTR MaLR 30 320 -268 303 235 106 12 chr3 32535531 32535616 -185501542 + MLT1K LTR MaLR 496 588 0 228 135 0 0 chr3 32536055 32536092 -185501066 + (A)n Simple_repeat Simple_repeat 1 37 0 213 39 0 0 chr3 32536135 32536161 -185500997 + (TC)n Simple_repeat Simple_repeat 2 27 0 22 0 0 0 chr3 32536678 32536700 -185500458 + AT_rich Low_complexity Low_complexity 1 22 0 23 65 0 16 chr3 32536793 32536833 -185500325 + AT_rich Low_complexity Low_complexity 1 41 -20 2292 32 4 0 chr3 32536833 32537111 -185500047 + AluY SINE Alu 1 279 -32 23 65 0 16 chr3 32537111 32537132 -185500026 + AT_rich Low_complexity Low_complexity 41 61 0 351 0 0 0 chr3 32537132 32537171 -185499987 + (TTA)n Simple_repeat Simple_repeat 2 40 0 373 286 151 0 chr3 32537875 32538001 -185499157 + MIR SINE MIR 48 192 -70 1753 135 3 33 chr3 32538003 32538306 -185498852 + AluSx SINE Alu 1 294 -18 841 219 52 36 chr3 32538967 32539216 -185497942 + MLT1D LTR MaLR 1 240 -227 2305 90 0 3 chr3 32539247 32539559 -185497599 - AluY SINE Alu 0 311 1 1604 149 10 35 chr3 32539560 32539848 -185497310 - AluJb SINE Alu -13 299 19 2174 101 0 25 chr3 32540022 32540339 -185496819 - AluSx SINE Alu -3 309 1 939 183 0 0 chr3 32540345 32540520 -185496638 - FRAM SINE Alu 0 176 2 193 333 93 31 chr3 32540563 32540692 -185496466 - MER5A DNA MER1_type -10 179 43 484 264 182 0 chr3 32540739 32540887 -185496271 - MER5A DNA MER1_type -8 181 7 306 148 0 0 chr3 32541424 32541478 -185495680 - L1MC4 LINE L1 0 8042 7989 3275 162 43 14 chr3 32541481 32542006 -185495152 + L1MB5 LINE L1 5550 6095 -79 1990 111 24 0 chr3 32542006 32542304 -185494854 - AluY SINE Alu -6 305 1 3275 162 43 14 chr3 32542304 32542353 -185494805 + L1MB5 LINE L1 6095 6141 -33 1235 181 4 26 chr3 32542353 32542579 -185494579 + AluJo SINE Alu 1 221 -91 455 195 0 0 chr3 32542655 32542732 -185494426 + AluJo SINE Alu 223 299 -13 230 81 0 0 chr3 32542732 32542769 -185494389 + L1MB5 LINE L1 6132 6168 -6 2008 105 21 0 chr3 32542786 32543071 -185494087 + AluSg SINE Alu 1 291 -19 1948 213 65 44 chr3 32543120 32543660 -185493498 - L1MC4 LINE L1 -194 7848 7298 1627 65 0 30 chr3 32543669 32543900 -185493258 + AluY SINE Alu 88 311 0 185 320 20 0 chr3 32544033 32544083 -185493075 - L2 LINE L2 -84 3188 3138 1949 138 0 0 chr3 32544153 32544450 -185492708 + AluSx SINE Alu 1 297 -15 2137 99 0 3 chr3 32545231 32545525 -185491633 - AluSx SINE Alu -19 293 1 2087 113 7 0 chr3 32545535 32545827 -185491331 - AluSq SINE Alu -19 294 1 37 52 0 0 chr3 32545904 32545962 -185491196 + AT_rich Low_complexity Low_complexity 1 58 0 773 184 0 75 chr3 32546025 32546199 -185490959 + AluJo SINE Alu 121 281 -31 327 272 44 78 chr3 32546221 32546394 -185490764 - L1ME4a LINE L1 -1 6120 5943 1920 116 14 130 chr3 32546394 32546424 -185490734 + MER47A DNA MER2_type 1 33 -2290 1697 186 10 0 chr3 32546424 32546719 -185490439 - AluJb SINE Alu -14 298 1 1920 116 14 130 chr3 32546719 32546842 -185490316 + MER47A DNA MER2_type 33 169 -2154 2165 109 0 13 chr3 32546842 32547146 -185490012 + AluSx SINE Alu 1 300 -12 1920 116 14 130 chr3 32547146 32547184 -185489974 + MER47A DNA MER2_type 169 210 -2113 1637 170 31 7 chr3 32547184 32547473 -185489685 + AluJo SINE Alu 1 296 -16 1920 116 14 130 chr3 32547473 32547693 -185489465 + MER47A DNA MER2_type 210 366 0 187 348 141 0 chr3 32548235 32548302 -185488856 - MIR SINE MIR 0 262 206 189 0 0 0 chr3 32548302 32548323 -185488835 + (TA)n Simple_repeat Simple_repeat 1 21 0 187 348 141 0 chr3 32548323 32548390 -185488768 - MIR SINE MIR -56 206 109 1214 259 123 5 chr3 32548390 32548803 -185488355 + LTR16C LTR ERVL 1 462 -29 287 280 40 40 chr3 32548829 32548929 -185488229 - MIR SINE MIR -148 114 15 2351 66 3 0 chr3 32548929 32549230 -185487928 - AluY SINE Alu -9 302 1 1997 140 0 10 chr3 32550945 32551252 -185485906 + AluJb SINE Alu 1 304 -8 792 137 86 6 chr3 32551353 32551528 -185485630 - MER33 DNA MER1_type 0 363 175 1693 207 55 34 chr3 32551528 32551910 -185485248 + MSTD LTR MaLR 1 390 -6 1027 146 0 38 chr3 32551915 32552100 -185485058 - FRAM SINE Alu -6 170 1 2107 102 0 16 chr3 32552182 32552486 -185484672 - AluSx SINE Alu -13 299 1 515 266 0 0 chr3 32552490 32552599 -185484559 - MER33 DNA MER1_type -215 109 1 452 232 80 0 chr3 32552599 32552711 -185484447 - MIR SINE MIR -54 208 88 578 248 37 70 chr3 32552750 32552778 -185484380 + MIR SINE MIR 53 80 -182 2198 91 10 0 chr3 32552778 32553074 -185484084 - AluSx SINE Alu -13 299 1 578 248 37 70 chr3 32553074 32553259 -185483899 + MIR SINE MIR 80 259 -3 511 158 53 0 chr3 32553542 32553637 -185483521 - MLT1G1 LTR MaLR 0 595 496 241 267 67 27 chr3 32553667 32553742 -185483416 - L2 LINE L2 -24 3289 3212 189 0 0 0 chr3 32554009 32554030 -185483128 + (T)n Simple_repeat Simple_repeat 1 21 0 292 307 22 0 chr3 32554947 32555084 -185482074 + L1MB7 LINE L1 5191 5330 -816 1119 186 5 18 chr3 32555115 32555336 -185481822 + AluJo SINE Alu 89 306 -6 854 286 69 31 chr3 32555337 32555923 -185481235 + L1MB7 LINE L1 5305 5922 -262 652 274 142 46 chr3 32555925 32556356 -185480802 - L2 LINE L2 -1 3312 2841 396 287 98 60 chr3 32556416 32556733 -185480425 - L2 LINE L2 -2546 768 440 311 235 33 131 chr3 32556756 32556909 -185480249 + HAL1b LINE L1 1198 1335 -13 1598 150 42 0 chr3 32557204 32557490 -185479668 - AluJb SINE Alu -4 308 11 395 305 8 23 chr3 32557909 32558037 -185479121 + MER5A DNA MER1_type 64 189 0 261 0 0 0 chr3 32558448 32558477 -185478681 + (CA)n Simple_repeat Simple_repeat 1 29 0 523 284 83 28 chr3 32558760 32558978 -185478180 - L2 LINE L2 -4 3309 3080 321 140 0 0 chr3 32559629 32559686 -185477472 + (TTCA)n Simple_repeat Simple_repeat 4 60 0 2125 90 31 0 chr3 32559690 32559978 -185477180 - AluSp SINE Alu -16 297 1 297 226 57 113 chr3 32559978 32560102 -185477056 - L2 LINE L2 -1 3312 3196 249 83 0 0 chr3 32560330 32560366 -185476792 + (T)n Simple_repeat Simple_repeat 1 36 0 1566 186 27 0 chr3 32560387 32560683 -185476475 - AluJb SINE Alu -8 304 1 322 302 190 43 chr3 32560799 32560935 -185476223 + L1ME4a LINE L1 5852 5967 -154 2080 101 0 0 chr3 32560935 32561213 -185475945 - AluSg SINE Alu -32 278 1 2038 132 0 0 chr3 32561213 32561516 -185475642 - AluSx SINE Alu -8 304 1 322 302 190 43 chr3 32561516 32561610 -185475548 + L1ME4a LINE L1 5966 6117 -4 825 178 46 0 chr3 32561614 32561766 -185475392 - FRAM SINE Alu -22 154 1 1705 160 3 17 chr3 32561783 32562077 -185475081 + AluJb SINE Alu 1 290 -22 372 188 138 0 chr3 32562283 32562363 -185474795 - MER5A DNA MER1_type -84 105 15 630 315 55 14 chr3 32562379 32562598 -185474560 + MIR SINE MIR 35 262 0 2232 87 10 13 chr3 32563710 32564021 -185473137 - AluSp SINE Alu -3 310 1 328 239 60 17 chr3 32564171 32564288 -185472870 - MIR SINE MIR -70 192 71 261 83 0 0 chr3 32564477 32564513 -185472645 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 678 249 116 3 chr3 32564922 32565107 -185472051 + MIR SINE MIR 26 217 -45 2085 118 3 0 chr3 32565747 32566034 -185471124 + AluSx SINE Alu 1 288 -24 44 0 0 0 chr3 32566034 32566078 -185471080 + AT_rich Low_complexity Low_complexity 1 44 0 975 232 13 9 chr3 32566670 32566903 -185470255 + MIR SINE MIR 26 259 -3 289 271 49 65 chr3 32567123 32567302 -185469856 + L1MC4 LINE L1 7325 7511 -297 281 261 73 98 chr3 32567306 32567499 -185469659 + L1MC5 LINE L1 7354 7535 -426 1763 172 0 0 chr3 32567499 32567772 -185469386 + AluJo SINE Alu 1 273 -39 281 261 73 98 chr3 32567772 32567934 -185469224 + L1MC5 LINE L1 7535 7700 -261 2232 102 3 0 chr3 32567963 32568256 -185468902 - AluSx SINE Alu -18 294 1 2332 59 0 26 chr3 32570142 32570445 -185466713 - AluY SINE Alu -16 295 1 589 314 74 0 chr3 32570445 32570674 -185466484 - MIR SINE MIR -3 259 14 2341 102 0 0 chr3 32570969 32571272 -185465886 - AluSg SINE Alu -7 303 1 270 0 0 0 chr3 32571311 32571341 -185465817 + (TG)n Simple_repeat Simple_repeat 2 31 0 376 355 14 0 chr3 32571553 32571694 -185465464 + MIR3 SINE MIR 59 201 -7 243 253 205 0 chr3 32571937 32572020 -185465138 - L2 LINE L2 -20 3293 3194 1122 236 190 25 chr3 32572545 32572981 -185464177 - L1MC4 LINE L1 0 8042 7535 39 68 0 0 chr3 32572984 32573058 -185464100 + AT_rich Low_complexity Low_complexity 1 74 0 1001 165 0 29 chr3 32573236 32573406 -185463752 + FRAM SINE Alu 6 170 -6 194 283 19 19 chr3 32573426 32573479 -185463679 + L2 LINE L2 3210 3262 -10 2365 93 10 0 chr3 32574447 32574748 -185462410 - AluSx SINE Alu -7 305 2 1929 160 7 3 chr3 32575534 32575840 -185461318 - AluJb SINE Alu -5 307 1 425 266 0 119 chr3 32575932 32575993 -185461165 + MIR3 SINE MIR 50 117 -91 2318 95 0 19 chr3 32575993 32576308 -185460850 - AluSc SINE Alu 0 309 1 425 266 0 119 chr3 32576308 32576423 -185460735 + MIR3 SINE MIR 117 205 -3 221 284 27 14 chr3 32576675 32576749 -185460409 - MIR SINE MIR -123 139 65 21 0 0 0 chr3 32578169 32578190 -185458968 + AT_rich Low_complexity Low_complexity 1 21 0 233 132 0 19 chr3 32579017 32579070 -185458088 + (GGA)n Simple_repeat Simple_repeat 1 52 0 56 105 0 0 chr3 32579257 32579467 -185457691 + GC_rich Low_complexity Low_complexity 1 210 0 23 54 0 0 chr3 32579772 32579809 -185457349 + GC_rich Low_complexity Low_complexity 1 37 0 222 289 50 25 chr3 32579820 32579941 -185457217 + C-rich Low_complexity Low_complexity 5 128 0 24 32 0 0 chr3 32580053 32580084 -185457074 + GC_rich Low_complexity Low_complexity 1 31 0 338 255 130 104 chr3 32583689 32584198 -185452960 - L1M2 LINE L1 -5495 1354 833 234 0 0 0 chr3 32586679 32586705 -185450453 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2084 95 21 21 chr3 32586707 32586992 -185450166 - AluSg SINE Alu -25 285 1 441 27 0 13 chr3 32587240 32587316 -185449842 + AluY SINE Alu 123 292 -20 1645 174 33 7 chr3 32588134 32588433 -185448725 - AluJb SINE Alu -5 307 1 3135 161 29 25 chr3 32589293 32589576 -185447582 + L1MB4 LINE L1 5587 5868 -312 2306 79 0 3 chr3 32589576 32589867 -185447291 + AluY SINE Alu 1 290 -21 3135 161 29 25 chr3 32589867 32590172 -185446986 + L1MB4 LINE L1 5868 6177 -3 2174 89 72 0 chr3 32590312 32590603 -185446555 + AluSx SINE Alu 1 312 0 226 245 20 0 chr3 32591406 32591455 -185445703 + L2 LINE L2 3209 3258 -14 310 282 90 19 chr3 32591625 32591781 -185445377 - L1MC4 LINE L1 -2 8040 7874 2151 89 0 7 chr3 32592156 32592464 -185444694 + AluSc SINE Alu 3 308 0 273 311 194 0 chr3 32592681 32592784 -185444374 + L2 LINE L2 3141 3263 -9 396 324 176 23 chr3 32594208 32594554 -185442604 - L2 LINE L2 -6 3307 2909 834 281 134 75 chr3 32594597 32595381 -185441777 - L2 LINE L2 -598 2716 1887 2022 116 0 0 chr3 32596016 32596292 -185440866 - AluSg SINE Alu -30 280 5 641 253 296 18 chr3 32598544 32598936 -185438222 - L2 LINE L2 -2 3311 2811 844 216 19 12 chr3 32599048 32599210 -185437948 + FAM SINE Alu 3 165 -10 21 57 0 0 chr3 32600321 32600356 -185436802 + AT_rich Low_complexity Low_complexity 1 35 0 521 271 85 28 chr3 32600591 32600768 -185436390 - MIR SINE MIR -74 188 2 21 36 0 0 chr3 32601276 32601304 -185435854 + AT_rich Low_complexity Low_complexity 1 28 0 1832 155 7 4 chr3 32602331 32602609 -185434549 - AluJo SINE Alu -31 281 3 656 224 0 28 chr3 32602610 32602753 -185434405 - AluJo SINE Alu -170 142 4 197 0 71 0 chr3 32603569 32603597 -185433561 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 185 196 0 0 chr3 32603710 32603756 -185433402 + L3 LINE CR1 912 957 -620 503 268 147 18 chr3 32603982 32604206 -185432952 - MIR SINE MIR -2 260 8 21 57 0 0 chr3 32604280 32604315 -185432843 + AT_rich Low_complexity Low_complexity 1 35 0 1118 150 0 12 chr3 32604670 32604837 -185432321 - AluJb SINE Alu -14 298 134 2027 132 3 31 chr3 32604838 32605157 -185432001 - AluSx SINE Alu -2 310 1 186 254 48 48 chr3 32605263 32605326 -185431832 + L2 LINE L2 3209 3271 -1 1901 81 0 0 chr3 32605514 32605749 -185431409 + AluSq SINE Alu 1 235 -78 244 158 0 0 chr3 32605749 32605787 -185431371 + Alu SINE Alu 189 226 -73 808 107 18 0 chr3 32605787 32605899 -185431259 + AluSg/x SINE Alu 179 292 -17 1761 158 7 33 chr3 32605904 32606208 -185430950 + AluJb SINE Alu 5 300 -12 22 0 0 0 chr3 32606372 32606394 -185430764 + AT_rich Low_complexity Low_complexity 1 22 0 1642 175 67 3 chr3 32606866 32607151 -185430007 + AluJb SINE Alu 1 303 -9 24 32 0 0 chr3 32607204 32607235 -185429923 + AT_rich Low_complexity Low_complexity 1 31 0 387 331 31 0 chr3 32607344 32607474 -185429684 + MIR SINE MIR 19 152 -110 951 223 0 0 chr3 32607734 32607900 -185429258 + FRAM SINE Alu 1 166 0 24 32 0 0 chr3 32607979 32608010 -185429148 + AT_rich Low_complexity Low_complexity 1 31 0 232 268 163 26 chr3 32608282 32608339 -185428819 + MER5B DNA MER1_type 2 50 -128 1803 173 13 0 chr3 32608339 32608640 -185428518 + AluJo SINE Alu 1 305 -7 232 268 163 26 chr3 32608640 32608735 -185428423 + MER5B DNA MER1_type 50 175 -3 236 325 123 0 chr3 32609503 32609617 -185427541 - L2 LINE L2 0 3272 3145 624 289 42 12 chr3 32609740 32609906 -185427252 - MIR3 SINE MIR -21 187 17 870 204 102 0 chr3 32610123 32610339 -185426819 + MIR SINE MIR 4 241 -21 472 242 8 25 chr3 32610358 32610478 -185426680 - MIR SINE MIR -105 157 40 1938 167 7 3 chr3 32611210 32611516 -185425642 - AluJb SINE Alu -3 309 3 2473 233 73 39 chr3 32611522 32611640 -185425518 - L1MEc LINE L1 -4046 2350 2237 1946 138 0 16 chr3 32611640 32611951 -185425207 - AluSx SINE Alu -6 306 1 2473 233 73 39 chr3 32611951 32612333 -185424825 - L1MEc LINE L1 -4159 2237 1869 2206 103 0 3 chr3 32612333 32612649 -185424509 + AluY SINE Alu 1 315 0 2473 233 73 39 chr3 32612649 32613147 -185424011 - L1MEc LINE L1 -4527 1869 1316 2642 221 67 42 chr3 32613152 32613971 -185423187 - L1MEc LINE L1 -5226 1170 331 672 246 17 6 chr3 32613996 32614171 -185422987 - L1MEc LINE L1 -6183 213 37 459 0 0 0 chr3 32615350 32615401 -185421757 + (TG)n Simple_repeat Simple_repeat 1 51 0 1044 195 5 5 chr3 32615418 32615613 -185421545 - AluJb SINE Alu -32 280 86 259 299 52 0 chr3 32616406 32616483 -185420675 + L2 LINE L2 3223 3303 -10 287 263 187 56 chr3 32617511 32617874 -185419284 - L1ME LINE L1 -288 5878 5459 232 179 0 0 chr3 32617985 32618024 -185419134 - L1ME LINE L1 -1369 4777 4739 * 308 316 111 54 chr3 32618020 32618336 -185418822 + L1 LINE L1 4782 5115 -1031 261 0 0 0 chr3 32618713 32618742 -185418416 + (TC)n Simple_repeat Simple_repeat 2 30 0 * 327 49 0 0 chr3 32618741 32618782 -185418376 + (TG)n Simple_repeat Simple_repeat 2 42 0 1426 223 17 59 chr3 32618824 32619178 -185417980 - MER58B DNA MER1_type -2 339 1 746 185 0 15 chr3 32619433 32619563 -185417595 + FLAM_A SINE Alu 1 128 -5 2222 115 3 0 chr3 32619566 32619870 -185417288 + AluSx SINE Alu 1 305 -7 423 230 0 0 chr3 32620302 32620376 -185416782 + MER94 DNA DNA 61 134 0 2534 72 0 3 chr3 32620640 32620946 -185416212 - AluY SINE Alu -6 305 1 310 169 36 72 chr3 32621137 32621220 -185415938 - L1MC4a LINE L1 -1873 5935 5856 247 191 167 36 chr3 32621232 32621316 -185415842 - MIR SINE MIR -79 183 89 2120 148 0 3 chr3 32621338 32621648 -185415510 + AluSx SINE Alu 1 309 -3 1814 148 88 145 chr3 32622030 32622493 -185414665 - L1MB7 LINE L1 -279 5905 5490 4962 74 2 0 chr3 32622493 32623101 -185414057 - L1PA8 LINE L1 -2 6170 5562 1814 148 88 145 chr3 32623101 32623308 -185413850 - L1MB7 LINE L1 -694 5490 5273 847 130 0 0 chr3 32623337 32623452 -185413706 - AluJb SINE Alu -197 115 1 840 222 19 5 chr3 32623454 32623661 -185413497 - L1MB7 LINE L1 -863 5283 5074 810 168 84 0 chr3 32623679 32623822 -185413336 - FRAM SINE Alu -21 155 1 1538 171 33 40 chr3 32623833 32624137 -185413021 - AluJb SINE Alu -10 302 1 3369 203 27 90 chr3 32624140 32624670 -185412488 - L1MB7 LINE L1 -1091 5055 4493 1596 169 48 14 chr3 32624670 32624960 -185412198 + AluJo SINE Alu 1 300 -12 3369 203 27 90 chr3 32624960 32624976 -185412182 - L1MB7 LINE L1 -1653 4493 4478 2703 166 19 2 chr3 32624976 32625392 -185411766 + MSTB LTR MaLR 4 426 0 3369 203 27 90 chr3 32625392 32625738 -185411420 - L1MB7 LINE L1 -1668 4478 4112 1946 135 3 35 chr3 32625738 32626056 -185411102 - AluJb SINE Alu -4 308 1 2081 95 84 0 chr3 32626059 32626344 -185410814 - AluSp SINE Alu -4 309 1 3369 203 27 90 chr3 32626344 32626556 -185410602 - L1MB7 LINE L1 -2036 4110 4015 707 183 39 28 chr3 32626561 32626741 -185410417 - L1M4 LINE L1 -961 5185 5004 385 250 59 99 chr3 32627043 32627127 -185410031 + MLT1K LTR MaLR 102 179 -409 2014 128 49 0 chr3 32627127 32627415 -185409743 + AluSx SINE Alu 1 302 -10 385 250 59 99 chr3 32627415 32627482 -185409676 + MLT1K LTR MaLR 179 247 -341 478 294 104 5 chr3 32627566 32627767 -185409391 + MLT1K LTR MaLR 366 586 -2 2669 48 0 3 chr3 32628699 32629010 -185408148 + AluY SINE Alu 1 310 -1 2191 94 17 10 chr3 32629178 32629466 -185407692 - AluSg SINE Alu -7 303 14 805 216 7 0 chr3 32630032 32630180 -185406978 + FRAM SINE Alu 25 173 -3 201 211 53 26 chr3 32630180 32630256 -185406902 - L2 LINE L2 -1377 1937 1860 1059 145 140 0 chr3 32630999 32631192 -185405966 - AluSg/x SINE Alu -10 299 80 2328 104 0 0 chr3 32631472 32631771 -185405387 - AluSx SINE Alu -13 299 1 400 263 0 10 chr3 32632747 32632846 -185404312 + MIR SINE MIR 51 148 -114 4614 121 57 57 chr3 32634555 32635340 -185401818 + LTR1 LTR ERV1 1 785 0 1622 182 0 0 chr3 32635875 32636139 -185401019 - AluJo SINE Alu -10 302 39 305 332 103 12 chr3 32636143 32636396 -185400762 - HAL1 LINE L1 0 2507 2232 424 308 33 37 chr3 32636586 32636675 -185400483 - HAL1 LINE L1 -495 2012 1924 2412 88 3 0 chr3 32636675 32636981 -185400177 - AluSp SINE Alu -6 307 1 424 308 33 37 chr3 32636981 32637105 -185400053 - HAL1 LINE L1 -583 1924 1800 19749 42 0 2 chr3 32687112 32689668 -185347490 - L1P LINE L1 -2974 3172 623 756 42 0 0 chr3 32689666 32689761 -185347397 - L1P LINE L1 -6048 98 4 * 421 273 191 9 chr3 32691133 32691390 -185345768 + L1MC1 LINE L1 5621 5808 -313 223 267 167 0 chr3 32691895 32691985 -185345173 + MIR3 SINE MIR 103 207 -1 840 238 0 22 chr3 32692824 32693009 -185344149 + MIR SINE MIR 82 262 0 1189 215 74 60 chr3 32693342 32693789 -185343369 - LTR37B LTR ERV1 -10 458 6 296 207 138 0 chr3 32693794 32693881 -185343277 + L2 LINE L2 3134 3232 -40 1390 68 37 0 chr3 32693894 32694084 -185343074 + MER30 DNA MER1_type 1 197 -33 226 270 80 15 chr3 32694264 32694401 -185342757 - L1 LINE L1 -2412 3734 3589 41019 31 21 1 chr3 32694649 32700683 -185336475 - L1PA2 LINE L1 0 6155 1 2222 116 0 7 chr3 32700916 32701218 -185335940 - AluSx SINE Alu -12 300 1 204 111 0 0 chr3 32702033 32702069 -185335089 + (CAT)n Simple_repeat Simple_repeat 3 38 0 1264 150 4 13 chr3 32702285 32702511 -185334647 + L1MC1 LINE L1 6101 6324 -9 278 269 0 15 chr3 32702678 32702745 -185334413 - L2 LINE L2 -711 2603 2538 312 261 41 7 chr3 32702753 32702896 -185334262 - L1MC5 LINE L1 0 8042 7801 3397 135 11 11 chr3 32702918 32703481 -185333677 + L1PA15 LINE L1 5600 6162 -3 21 0 0 0 chr3 32703481 32703502 -185333656 + AT_rich Low_complexity Low_complexity 1 21 0 198 103 0 0 chr3 32703745 32703774 -185333384 + (CA)n Simple_repeat Simple_repeat 1 29 0 315 225 93 99 chr3 32703846 32704028 -185333130 - L1MC5 LINE L1 -579 7382 7202 469 290 61 73 chr3 32704121 32704410 -185332748 - L1ME3A LINE L1 -260 5910 5619 1024 214 27 27 chr3 32704410 32704634 -185332524 - MER58A DNA MER1_type 0 224 1 469 290 61 73 chr3 32704634 32705000 -185332158 - L1ME3A LINE L1 -551 5619 5263 696 288 105 80 chr3 32705015 32705613 -185331545 - L1ME3A LINE L1 -893 5253 4641 386 348 0 7 chr3 32705618 32705753 -185331405 - MIR SINE MIR -118 144 11 274 262 145 46 chr3 32705783 32705962 -185331196 + MIR SINE MIR 5 211 -51 1636 249 51 39 chr3 32705986 32706495 -185330663 + MLT2B1 LTR ERVL 6 520 0 5886 195 43 9 chr3 32706498 32709847 -185327311 + ERVL-B1 LTR ERVL 4 3563 -2201 2204 117 17 0 chr3 32709847 32710146 -185327012 + AluSx SINE Alu 1 304 -8 5886 195 43 9 chr3 32710146 32710197 -185326961 + ERVL-B1 LTR ERVL 3563 3611 -2153 938 189 11 0 chr3 32710197 32710382 -185326776 + MLT1B LTR MaLR 204 390 0 505 221 18 9 chr3 32711126 32711239 -185325919 - LTR16A1 LTR ERVL 0 457 344 230 301 105 0 chr3 32711516 32711649 -185325509 + L1MEc LINE L1 789 935 -5461 1918 127 25 4 chr3 32711656 32711958 -185325200 + AluSx SINE Alu 1 308 0 931 244 58 75 chr3 32712102 32712735 -185324423 - HAL1 LINE L1 -165 2342 1548 1434 106 45 39 chr3 32712876 32713188 -185323970 - L1PBa LINE L1 -4115 2748 2435 764 298 11 0 chr3 32713194 32713476 -185323682 - L1PBa LINE L1 -6573 290 6 408 271 42 54 chr3 32713490 32713656 -185323502 + L2 LINE L2 3146 3309 -4 368 309 0 54 chr3 32713731 32713880 -185323278 + MIR SINE MIR 51 191 -71 495 259 45 68 chr3 32713924 32714144 -185323014 - MIR SINE MIR -2 260 46 216 200 0 0 chr3 32714291 32714336 -185322822 + T-rich Low_complexity Low_complexity 1 45 0 17412 35 3 1 chr3 32714339 32717230 -185319928 - L1PA4 LINE L1 -3 6152 3256 759 250 7 0 chr3 32719344 32719488 -185317670 + Charlie1 DNA MER1_type 1 145 -2616 4859 115 7 12 chr3 32719489 32720230 -185316928 + L1P LINE L1 762 1498 -4648 271 204 0 0 chr3 32720333 32720382 -185316776 + MLT1G LTR MaLR 541 589 -1 834 314 80 58 chr3 32720524 32720755 -185316403 - L2 LINE L2 -190 3082 2857 2004 137 0 22 chr3 32720755 32721069 -185316089 + AluSq SINE Alu 1 307 -6 834 314 80 58 chr3 32721069 32721389 -185315769 - L2 LINE L2 -415 2857 2493 2195 125 0 22 chr3 32721389 32721708 -185315450 + AluSx SINE Alu 1 312 0 834 314 80 58 chr3 32721708 32721936 -185315222 - L2 LINE L2 -779 2493 2271 454 278 231 38 chr3 32721974 32722294 -185314864 - MLT1J2 LTR MaLR -10 440 59 448 124 225 124 chr3 32722317 32722381 -185314777 - MER53 DNA DNA -3 186 130 2339 82 10 0 chr3 32722381 32722672 -185314486 + AluSp SINE Alu 1 294 -19 448 124 225 124 chr3 32722672 32722776 -185314382 - MER53 DNA DNA -59 130 1 2067 113 39 0 chr3 32723060 32723344 -185313814 + AluSg1 SINE Alu 1 295 -14 1943 240 66 35 chr3 32723819 32724394 -185312764 - MLT1E LTR MaLR 0 593 1 21 36 0 0 chr3 32724722 32724750 -185312408 + AT_rich Low_complexity Low_complexity 1 28 0 1818 155 0 7 chr3 32726651 32726941 -185310217 + AluJb SINE Alu 2 289 -23 445 149 40 0 chr3 32726968 32727042 -185310116 + MER81 DNA DNA 36 112 -2 556 145 24 0 chr3 32727359 32727442 -185309716 + AluJb SINE Alu 3 87 -225 1435 132 48 0 chr3 32727631 32727858 -185309300 + AluJb SINE Alu 63 300 -12 1661 128 4 0 chr3 32728192 32728419 -185308739 - AluSx SINE Alu -79 233 6 473 299 21 43 chr3 32728423 32728748 -185308410 - L1M4 LINE L1 -1452 4694 4377 1563 163 83 0 chr3 32728770 32729047 -185308111 + AluJb SINE Alu 5 304 -8 2221 131 0 0 chr3 32729098 32729404 -185307754 - AluJb SINE Alu -6 306 1 341 220 51 51 chr3 32729832 32729950 -185307208 + L1M2 LINE L1 5593 5710 -602 2254 104 0 10 chr3 32730274 32730573 -185306585 - AluSx SINE Alu -16 296 1 2107 111 20 7 chr3 32730573 32730871 -185306287 - AluSx SINE Alu -9 303 2 390 245 53 49 chr3 32730877 32731015 -185306143 - L1M3 LINE L1 -737 5434 5283 2268 107 0 0 chr3 32731015 32731315 -185305843 - AluSx SINE Alu -12 300 1 390 245 53 49 chr3 32731315 32731412 -185305746 - L1M3 LINE L1 -888 5283 5188 2957 130 54 12 chr3 32731661 32732145 -185305013 - L1MA8 LINE L1 -2 6289 5786 27 0 0 0 chr3 32732291 32732318 -185304840 + AT_rich Low_complexity Low_complexity 1 27 0 718 263 103 62 chr3 32732319 32732369 -185304789 - HAL1 LINE L1 -28 2479 2432 1699 140 19 53 chr3 32732369 32732691 -185304467 + AluJo SINE Alu 1 311 -1 718 263 103 62 chr3 32732691 32733042 -185304116 - HAL1 LINE L1 -75 2432 2042 2378 95 0 3 chr3 32733042 32733347 -185303811 - AluSx SINE Alu -8 304 1 718 263 103 62 chr3 32733347 32733557 -185303601 - HAL1 LINE L1 -465 2042 1842 1190 70 0 19 chr3 32733561 32733717 -185303441 - AluSg1 SINE Alu -156 153 1 248 214 43 29 chr3 32733726 32733796 -185303362 - HAL1 LINE L1 -698 1809 1739 1329 275 43 88 chr3 32733816 32734290 -185302868 - HAL1 LINE L1 -1048 1459 965 1725 98 0 5 chr3 32734290 32734514 -185302644 - AluSg/x SINE Alu -18 292 70 1329 275 43 88 chr3 32734514 32734656 -185302502 - HAL1 LINE L1 -1542 965 818 2260 116 0 0 chr3 32734656 32734957 -185302201 - AluSq SINE Alu -12 301 1 1995 136 7 3 chr3 32734959 32735254 -185301904 - AluSx SINE Alu -16 296 1 1329 275 43 88 chr3 32735254 32735722 -185301436 - HAL1 LINE L1 -1690 817 420 1025 292 113 3 chr3 32735787 32736178 -185300980 + LTR16A LTR ERVL 2 435 -15 412 232 161 0 chr3 32736228 32736340 -185300818 - LTR16A LTR ERVL -316 134 5 315 300 47 112 chr3 32736448 32736554 -185300604 + MIR SINE MIR 26 110 -152 890 194 94 0 chr3 32736554 32736714 -185300444 - FAM SINE Alu 0 175 1 315 300 47 112 chr3 32736714 32736840 -185300318 + MIR SINE MIR 110 243 -19 218 345 0 0 chr3 32736947 32737002 -185300156 + L3 LINE CR1 578 632 -945 26 64 0 0 chr3 32737002 32737049 -185300109 + AT_rich Low_complexity Low_complexity 1 47 0 282 95 0 0 chr3 32737409 32737451 -185299707 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2767 153 10 85 chr3 32737523 32738113 -185299045 - MER52A LTR ERV1 0 1755 1210 3044 178 193 63 chr3 32738216 32739338 -185297820 - MER52A LTR ERV1 -406 1349 1 640 275 96 23 chr3 32739395 32739701 -185297457 - L1ME LINE L1 -526 5636 5299 2198 105 3 0 chr3 32739701 32739995 -185297163 - AluSg SINE Alu -15 295 1 640 275 96 23 chr3 32739995 32740041 -185297117 - L1ME LINE L1 -863 5299 5258 789 169 23 8 chr3 32740178 32740308 -185296850 - FLAM_C SINE Alu -1 132 1 453 224 64 8 chr3 32740756 32740881 -185296277 - L1ME LINE L1 -1454 4692 4561 353 340 67 10 chr3 32740918 32741112 -185296046 - L1ME LINE L1 -1674 4472 4268 23 0 0 0 chr3 32741815 32741838 -185295320 + AT_rich Low_complexity Low_complexity 1 23 0 395 318 61 7 chr3 32741924 32742072 -185295086 - L2 LINE L2 -5 3267 3112 364 229 62 26 chr3 32742149 32742265 -185294893 + MLT1E LTR MaLR 20 143 -412 1942 170 0 0 chr3 32742425 32742737 -185294421 - AluJb SINE Alu 0 312 1 2262 101 7 3 chr3 32742772 32743078 -185294080 - AluSg1 SINE Alu -2 307 1 233 269 0 0 chr3 32743767 32743819 -185293339 - L3 LINE CR1 -781 796 745 * 465 306 15 58 chr3 32743809 32744015 -185293143 + L3 LINE CR1 799 995 -582 229 239 46 46 chr3 32744026 32744156 -185293002 - L1M LINE L1 -779 5395 5266 230 313 97 23 chr3 32744285 32744461 -185292697 - L1M4 LINE L1 -1040 5106 4918 938 124 8 0 chr3 32744502 32744631 -185292527 - FLAM_C SINE Alu -3 130 1 487 212 8 61 chr3 32744935 32745067 -185292091 + L2 LINE L2 3185 3309 -4 237 383 87 7 chr3 32745095 32745244 -185291914 + L2 LINE L2 2917 3077 -195 198 0 0 0 chr3 32745278 32745300 -185291858 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 3739 67 5 0 chr3 32745300 32745746 -185291412 - L1PA7 LINE L1 -10 6144 5697 261 200 62 15 chr3 32746118 32746183 -185290975 - L1MA10 LINE L1 0 6334 6267 923 149 0 8 chr3 32746343 32746477 -185290681 + FLAM_C SINE Alu 1 133 0 458 284 0 45 chr3 32747228 32747383 -185289775 + MIR SINE MIR 2 149 -113 526 279 82 19 chr3 32747630 32747838 -185289320 + LTR33 LTR ERVL 301 521 0 727 286 36 14 chr3 32749133 32749353 -185287805 + MIR SINE MIR 26 250 -12 3102 147 8 77 chr3 32749766 32750405 -185286753 - L1 LINE L1 -1141 5005 4411 2413 125 35 13 chr3 32750405 32750782 -185286376 - Tigger2 DNA MER2_type 0 2718 2334 5087 183 32 7 chr3 32750928 32751982 -185285176 - L1 LINE L1 -2502 3644 2564 350 144 0 0 chr3 32752023 32752091 -185285067 - L1MC4 LINE L1 -261 7628 7480 300 222 49 0 chr3 32752182 32752263 -185284895 + L1ME3A LINE L1 5793 5877 -293 200 190 35 52 chr3 32752812 32752870 -185284288 - L2 LINE L2 -32 3281 3225 531 235 207 35 chr3 32752879 32753198 -185283960 - L1M4 LINE L1 -978 5168 4795 969 287 42 44 chr3 32753313 32753554 -185283604 - L1MEc LINE L1 -2200 3929 3689 2143 129 23 0 chr3 32753554 32753856 -185283302 - AluJb SINE Alu -3 309 1 969 287 42 44 chr3 32753856 32754182 -185282976 - L1MEc LINE L1 -2440 3689 3363 529 276 57 70 chr3 32754181 32754359 -185282799 - L1MEc LINE L1 -3311 2818 2639 * 1812 135 0 96 chr3 32754359 32754565 -185282593 - AluJo SINE Alu -10 302 139 1953 143 3 10 chr3 32754565 32754896 -185282262 + AluSq SINE Alu 1 313 0 1812 135 0 96 chr3 32754896 32755023 -185282135 - AluJo SINE Alu -173 139 1 529 276 57 70 chr3 32755023 32755289 -185281869 - L1MEc LINE L1 -3490 2639 2380 2206 107 140 48 chr3 32755289 32755356 -185281802 - MSTA LTR MaLR 0 428 369 1824 146 59 3 chr3 32755356 32755643 -185281515 + AluSx SINE Alu 1 303 -9 2206 107 140 48 chr3 32755643 32755967 -185281191 - MSTA LTR MaLR -59 369 1 529 276 57 70 chr3 32755967 32756051 -185281107 - L1MEc LINE L1 -3749 2380 2296 702 266 47 21 chr3 32756051 32756284 -185280874 + LTR33 LTR ERVL 1 239 -282 312 241 37 0 chr3 32756500 32756608 -185280550 - L1MEc LINE L1 -3858 2271 2160 192 40 0 0 chr3 32756643 32756668 -185280490 + (TA)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr3 32756696 32756719 -185280439 + AT_rich Low_complexity Low_complexity 1 23 0 546 135 54 9 chr3 32756831 32756942 -185280216 - LTR9B LTR ERV1 -84 560 445 427 321 103 31 chr3 32757172 32757351 -185279807 - L1MEc LINE L1 -4573 1737 1572 1746 171 3 22 chr3 32757351 32757666 -185279492 - AluSx SINE Alu -3 309 1 427 321 103 31 chr3 32757666 32757875 -185279283 - L1MEc LINE L1 -4738 1572 1321 2230 120 3 0 chr3 32757886 32758194 -185278964 - AluSp SINE Alu -4 309 1 450 309 23 28 chr3 32758229 32758446 -185278712 - L1MEc LINE L1 -4893 1226 1011 683 279 46 67 chr3 32758482 32758873 -185278285 - L1MEc LINE L1 -5269 850 468 199 386 8 38 chr3 32759301 32759433 -185277725 + L2 LINE L2 2840 2967 -305 456 176 0 0 chr3 32759722 32759796 -185277362 - MER96 DNA MER1_type? -8 167 94 433 219 125 0 chr3 32759909 32760005 -185277153 + L2 LINE L2 3206 3313 0 362 372 7 7 chr3 32760291 32760436 -185276722 - MER5B DNA MER1_type -30 148 4 886 271 118 36 chr3 32761559 32762058 -185275100 - MLT1H1 LTR MaLR 0 555 16 598 270 58 5 chr3 32762105 32762294 -185274864 - MIR SINE MIR -59 203 5 317 219 41 0 chr3 32762876 32762949 -185274209 - L2 LINE L2 -55 3217 3142 355 282 86 55 chr3 32763001 32763256 -185273902 + MLT1J LTR MaLR 2 264 -247 1032 154 21 27 chr3 32763601 32763789 -185273369 - MER53 DNA DNA 0 189 3 194 194 0 0 chr3 32763839 32763875 -185273283 + L2 LINE L2 3262 3297 -16 770 188 65 24 chr3 32764315 32764485 -185272673 - FRAM SINE Alu -6 170 1 235 347 107 20 chr3 32766476 32766626 -185270532 + L2 LINE L2 2455 2617 -697 205 288 17 0 chr3 32766647 32766706 -185270452 + MIR SINE MIR 14 73 -189 351 0 0 0 chr3 32766706 32766745 -185270413 + (TG)n Simple_repeat Simple_repeat 1 39 0 2161 113 3 0 chr3 32766764 32767046 -185270112 - AluSp SINE Alu -30 283 1 434 279 71 7 chr3 32767050 32767190 -185269968 + MIR SINE MIR 70 218 -44 624 254 108 75 chr3 32767360 32767722 -185269436 + MLT1H LTR MaLR 110 490 -59 2265 12 0 4 chr3 32767722 32767971 -185269187 - AluY SINE Alu -4 307 60 624 254 108 75 chr3 32767971 32768034 -185269124 + MLT1H LTR MaLR 490 549 0 441 268 57 0 chr3 32768088 32768211 -185268947 - MER94 DNA DNA -3 131 2 204 346 48 39 chr3 32768693 32768797 -185268361 + L2 LINE L2 3160 3264 -8 557 267 86 14 chr3 32768861 32769071 -185268087 - LTR16A LTR ERVL -10 440 216 1033 147 99 4 chr3 32769306 32769538 -185267620 + L1PB1 LINE L1 5894 6147 -4 23 0 0 0 chr3 32769538 32769561 -185267597 + AT_rich Low_complexity Low_complexity 1 23 0 414 281 7 33 chr3 32769578 32769731 -185267427 - L2 LINE L2 -144 3169 3021 2097 113 0 7 chr3 32769736 32770029 -185267129 + AluJb SINE Alu 5 295 -17 496 173 0 0 chr3 32770054 32770135 -185267023 + AluJ/FLAM SINE Alu 2 82 -230 1324 234 50 50 chr3 32770148 32770576 -185266582 - L2 LINE L2 -302 3011 2586 2302 43 3 0 chr3 32770576 32770858 -185266300 + L1PA5 LINE L1 5869 6151 -3 909 138 132 0 chr3 32770859 32771026 -185266132 + L1MC1 LINE L1 5857 6045 -288 5061 178 5 24 chr3 32771145 32772527 -185264631 - L1P5 LINE L1 -680 5471 4120 180 111 0 0 chr3 32773191 32773218 -185263940 + (CA)n Simple_repeat Simple_repeat 2 28 0 323 350 14 14 chr3 32774030 32774170 -185262988 + L2 LINE L2 2721 2860 -454 2035 144 0 3 chr3 32774170 32774468 -185262690 - AluJb SINE Alu -6 306 10 262 146 0 0 chr3 32774562 32774603 -185262555 - L2 LINE L2 -5 3308 3268 462 259 105 41 chr3 32774728 32774994 -185262164 + MLT1G1 LTR MaLR 8 290 -305 201 74 0 0 chr3 32776266 32776293 -185260865 + (TATAA)n Simple_repeat Simple_repeat 4 30 0 47 53 0 0 chr3 32778056 32778131 -185259027 + GC_rich Low_complexity Low_complexity 1 75 0 779 146 0 23 chr3 32778345 32778475 -185258683 - AluJo SINE Alu -151 161 35 41 58 0 0 chr3 32778609 32778678 -185258480 + AT_rich Low_complexity Low_complexity 1 69 0 1386 172 169 12 chr3 32778687 32779019 -185258139 - MLT2C1 LTR ERVL 0 397 14 26 0 0 0 chr3 32779116 32779142 -185258016 + AT_rich Low_complexity Low_complexity 1 26 0 4925 85 17 1 chr3 32779937 32780628 -185256530 + L1PA8 LINE L1 5471 6172 0 1117 161 0 6 chr3 32781094 32781274 -185255884 + AluJb SINE Alu 120 298 -14 21 36 0 0 chr3 32781642 32781670 -185255488 + AT_rich Low_complexity Low_complexity 1 28 0 1123 62 0 0 chr3 32782227 32782373 -185254785 - L1PA8 LINE L1 -8 6164 6019 212 375 38 51 chr3 32782618 32782853 -185254305 + L2 LINE L2 2627 2858 -456 607 262 24 6 chr3 32782926 32783094 -185254064 - MIR SINE MIR -24 238 68 1506 205 30 0 chr3 32784825 32785162 -185251996 + L1MB7 LINE L1 5825 6171 -13 192 250 0 0 chr3 32785835 32785875 -185251283 - L2 LINE L2 -236 3036 2997 261 324 44 29 chr3 32786850 32786986 -185250172 + MIR SINE MIR 79 216 -46 21 0 0 0 chr3 32787020 32787041 -185250117 + AT_rich Low_complexity Low_complexity 1 21 0 781 180 101 39 chr3 32787351 32787529 -185249629 - MER5A DNA MER1_type 0 189 1 539 314 68 39 chr3 32787540 32787887 -185249271 - L1M4 LINE L1 -2505 3641 3283 283 299 64 32 chr3 32787930 32788181 -185248977 - L1M4 LINE L1 -2928 3218 2960 252 307 52 25 chr3 32788563 32788889 -185248269 + L1ME3A LINE L1 3623 3957 -2189 329 349 50 42 chr3 32789518 32789779 -185247379 + L1ME3A LINE L1 4077 4339 -1807 985 300 36 70 chr3 32789781 32790198 -185246960 - L2 LINE L2 -3 3310 2908 1584 208 152 9 chr3 32790571 32791013 -185246145 - MLT1D LTR MaLR 0 505 1 265 235 0 43 chr3 32791258 32791388 -185245770 + L1ME3A LINE L1 5316 5441 -2408 1233 216 154 38 chr3 32791393 32791842 -185245316 - MLT1D LTR MaLR -4 501 1 431 274 98 65 chr3 32791960 32792296 -185244862 + L1ME3A LINE L1 5462 5808 -313 211 306 24 57 chr3 32792423 32792547 -185244611 + MIR3 SINE MIR 37 156 -52 244 314 105 0 chr3 32792778 32792883 -185244275 + MARNA DNA Mariner 425 540 -46 213 65 0 0 chr3 32792883 32792914 -185244244 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2617 45 0 3 chr3 32793406 32793718 -185243440 - AluY SINE Alu 0 311 1 299 309 31 10 chr3 32793965 32794062 -185243096 + MIR SINE MIR 88 186 -76 401 242 113 26 chr3 32794319 32794513 -185242645 + L1ME3A LINE L1 5959 6169 -1 337 350 62 12 chr3 32794628 32794788 -185242370 - MER5A DNA MER1_type -4 185 18 660 187 26 26 chr3 32794808 32794963 -185242195 - MER5B DNA MER1_type -18 160 6 339 288 82 34 chr3 32796662 32796681 -185240477 - MIR3 SINE MIR -32 176 159 712 162 246 0 chr3 32796681 32796848 -185240310 - MER3 DNA MER1_type 0 209 2 339 288 82 34 chr3 32796848 32796974 -185240184 - MIR3 SINE MIR -49 159 24 528 256 109 56 chr3 32797922 32798243 -185238915 - MLT1L LTR MaLR -82 533 196 984 232 152 45 chr3 32798267 32798759 -185238399 - MLT1H LTR MaLR -4 545 1 22 35 0 0 chr3 32799721 32799750 -185237408 + AT_rich Low_complexity Low_complexity 1 29 0 402 274 91 32 chr3 32799995 32800181 -185236977 - L2 LINE L2 -5 3267 3071 651 245 175 37 chr3 32800624 32800758 -185236400 - L1MC/D LINE L1 -1985 5823 5709 186 103 0 0 chr3 32800758 32800787 -185236371 + (CATATA)n Simple_repeat Simple_repeat 6 34 0 651 245 175 37 chr3 32800787 32800921 -185236237 - L1MC/D LINE L1 -2099 5709 5518 1931 163 46 0 chr3 32800947 32801272 -185235886 - MER2 DNA MER2_type -1 343 4 203 286 0 0 chr3 32803150 32803199 -185233959 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 356 169 14 0 chr3 32803259 32803330 -185233828 - MER116 DNA Mariner -8 72 1 839 232 40 16 chr3 32803732 32803982 -185233176 + MER112 DNA MER1_type 1 256 0 1514 192 10 70 chr3 32806446 32806832 -185230326 - MLT1A2 LTR MaLR -11 363 1 35643 33 25 1 chr3 32807091 32812495 -185224663 - L1PA3 LINE L1 0 6155 617 732 43 0 0 chr3 32812495 32812587 -185224571 - L1PA3 LINE L1 -6054 92 1 634 194 35 14 chr3 32812643 32812787 -185224371 - Charlie4 DNA MER1_type 0 1961 1815 1054 286 99 50 chr3 32814142 32814699 -185222459 - MLT1K LTR MaLR -4 584 1 2326 94 0 13 chr3 32815778 32816086 -185221072 + AluSg SINE Alu 6 309 -1 1418 195 30 30 chr3 32817152 32817450 -185219708 + AluJo SINE Alu 2 299 -13 390 292 76 32 chr3 32817716 32817901 -185219257 - MIR SINE MIR -21 241 49 241 331 159 0 chr3 32819087 32819244 -185217914 + L1M3 LINE L1 5365 5546 -634 751 294 134 34 chr3 32820451 32820808 -185216350 + L3 LINE CR1 1165 1557 -20 21 0 0 0 chr3 32822149 32822170 -185214988 + AT_rich Low_complexity Low_complexity 1 21 0 2652 66 20 3 chr3 32822211 32822543 -185214615 - L1P3 LINE L1 -426 5728 5388 2271 69 76 0 chr3 32822543 32822829 -185214329 + L1PA7 LINE L1 5842 6152 -2 2652 66 20 3 chr3 32822829 32822845 -185214313 - L1P3 LINE L1 -766 5388 5374 1038 189 17 0 chr3 32823892 32824072 -185213086 - MER5A DNA MER1_type -6 183 1 25 0 0 0 chr3 32824408 32824433 -185212725 + AT_rich Low_complexity Low_complexity 1 25 0 1078 291 74 21 chr3 32824444 32825038 -185212120 + L2 LINE L2 2690 3312 -1 295 320 88 20 chr3 32826414 32826561 -185210597 + MIR SINE MIR 8 164 -98 1772 184 42 101 chr3 32826563 32827057 -185210101 + LTR40c LTR ERVL 1 465 0 2332 101 0 0 chr3 32827216 32827513 -185209645 + AluSx SINE Alu 1 297 -15 2054 175 52 70 chr3 32828009 32828523 -185208635 - MLT1D LTR MaLR 0 505 1 2080 175 91 0 chr3 32828974 32829357 -185207801 - MSTB LTR MaLR 0 426 9 387 257 50 29 chr3 32829481 32829621 -185207537 - L2 LINE L2 0 3313 3171 418 250 0 60 chr3 32829706 32829806 -185207352 - MER5A DNA MER1_type -87 102 9 413 314 17 29 chr3 32829822 32829997 -185207161 - MER5B DNA MER1_type 0 178 6 767 229 27 33 chr3 32830041 32830224 -185206934 + MER5A DNA MER1_type 6 187 -2 370 318 110 17 chr3 32830234 32830407 -185206751 - MER5B DNA MER1_type 0 189 1 885 144 0 4 chr3 32831660 32831880 -185205278 + AluJb SINE Alu 5 300 -12 418 249 112 66 chr3 32832053 32832177 -185204981 + MIR SINE MIR 43 181 -81 2103 108 17 0 chr3 32832177 32832464 -185204694 + AluSx SINE Alu 1 292 -20 418 249 112 66 chr3 32832464 32832536 -185204622 + MIR SINE MIR 181 248 -14 1015 120 0 0 chr3 32832620 32832762 -185204396 + FRAM SINE Alu 23 164 -12 196 98 24 24 chr3 32832762 32832803 -185204355 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 873 248 16 50 chr3 32832993 32833251 -185203907 - MIR SINE MIR 0 262 14 21 36 0 0 chr3 32833289 32833317 -185203841 + AT_rich Low_complexity Low_complexity 1 28 0 1771 216 18 17 chr3 32833501 32833908 -185203250 + L1ME1 LINE L1 5677 6080 -86 1145 149 6 0 chr3 32833908 32834076 -185203082 - AluSg/x SINE Alu -10 300 132 2391 93 0 0 chr3 32834076 32834378 -185202780 - AluSg SINE Alu -8 302 1 25 0 0 0 chr3 32835391 32835416 -185201742 + GC_rich Low_complexity Low_complexity 1 25 0 2654 106 13 8 chr3 32835639 32836016 -185201142 + L1PA16 LINE L1 5775 6153 -13 446 349 149 19 chr3 32836220 32836481 -185200677 - L2 LINE L2 0 3272 2978 640 290 63 20 chr3 32836511 32836763 -185200395 + L1MEc LINE L1 60 322 -6074 1074 156 58 44 chr3 32836765 32836975 -185200183 + MLT2B2 LTR ERVL 3 209 -306 207 0 0 0 chr3 32836975 32836998 -185200160 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 261 0 0 0 chr3 32836997 32837026 -185200132 + (TG)n Simple_repeat Simple_repeat 2 30 0 1074 156 58 44 chr3 32836998 32837040 -185200118 + MLT2B2 LTR ERVL 209 230 -285 207 0 0 0 chr3 32837091 32837114 -185200044 + (TG)n Simple_repeat Simple_repeat 2 24 0 1368 225 43 33 chr3 32837121 32837450 -185199708 + MLT2B3 LTR ERVL 223 554 0 977 286 48 60 chr3 32837450 32838052 -185199106 + L1MEc LINE L1 318 912 -5484 279 248 153 29 chr3 32838434 32838571 -185198587 - MIR SINE MIR -14 248 95 504 294 65 33 chr3 32838668 32838882 -185198276 + MIR SINE MIR 31 251 -11 891 245 22 0 chr3 32839020 32839204 -185197954 + MER5A DNA MER1_type 1 188 -1 2614 40 0 3 chr3 32840471 32840772 -185196386 + AluY SINE Alu 1 300 -11 2149 135 0 0 chr3 32840987 32841299 -185195859 + AluSx SINE Alu 1 312 0 210 305 61 0 chr3 32841365 32841447 -185195711 - MIR SINE MIR -2 260 174 248 0 0 30 chr3 32841582 32841615 -185195543 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 2012 124 7 10 chr3 32841625 32841931 -185195227 - AluSx SINE Alu -7 305 1 1052 246 176 37 chr3 32842030 32842461 -185194697 + MLT1H LTR MaLR 1 491 -58 397 198 90 18 chr3 32842479 32842590 -185194568 + L1MC5 LINE L1 7270 7388 -573 1298 251 104 47 chr3 32844586 32845093 -185192065 - MLT1H1 LTR MaLR 0 555 20 2343 198 24 53 chr3 32845285 32845795 -185191363 + LTR42 LTR ERVL 1 495 0 406 302 103 16 chr3 32845858 32846100 -185191058 + LTR16C LTR ERVL 186 448 -43 212 209 0 0 chr3 32846154 32846197 -185190961 + L3 LINE CR1 1529 1571 -6 1484 133 29 82 chr3 32846221 32846500 -185190658 - AluJo SINE Alu -15 297 34 2199 158 24 0 chr3 32846874 32847210 -185189948 + MER7A DNA MER2_type 1 342 -4 1727 142 131 71 chr3 32848594 32848960 -185188198 + MLT1B LTR MaLR 1 388 -2 2092 85 16 72 chr3 32848975 32849293 -185187865 - AluSq SINE Alu -13 300 1 2295 115 0 3 chr3 32849295 32849607 -185187551 - AluSx SINE Alu -1 311 1 826 204 80 6 chr3 32849628 32849804 -185187354 - MER5A DNA MER1_type 0 189 1 694 239 149 36 chr3 32850237 32850572 -185186586 + MER115 DNA AcHobo 56 428 -265 554 223 70 38 chr3 32850566 32850723 -185186435 + MER63A DNA MER1_type 49 210 0 * 251 128 0 0 chr3 32850955 32850994 -185186164 - MSTA LTR MaLR -2 426 388 1950 141 10 0 chr3 32850994 32851299 -185185859 + AluSx SINE Alu 1 308 -4 1982 157 0 10 chr3 32851307 32851613 -185185545 + AluJb SINE Alu 1 303 -9 566 28 14 0 chr3 32851624 32851696 -185185462 + (GGAA)n Simple_repeat Simple_repeat 2 74 0 2409 87 0 0 chr3 32851726 32852024 -185185134 + AluSx SINE Alu 1 298 -14 1543 159 165 26 chr3 32852025 32852371 -185184787 - MSTA LTR MaLR -34 394 1 362 249 189 30 chr3 32852477 32852678 -185184480 + MLT1L LTR MaLR 203 435 -180 668 119 0 79 chr3 32852715 32852760 -185184398 - L1MB2 LINE L1 -5 6166 6119 2424 84 0 0 chr3 32852760 32853059 -185184099 - AluY SINE Alu -12 299 1 668 119 0 79 chr3 32853059 32853139 -185184019 - L1MB2 LINE L1 -52 6119 6051 922 167 25 0 chr3 32853142 32853304 -185183854 - L1MA3 LINE L1 -5 6300 6135 3369 143 76 16 chr3 32853305 32853912 -185183246 - L1MB2 LINE L1 -112 6059 5417 409 125 0 91 chr3 32854005 32854093 -185183065 - AluJo SINE Alu -10 302 223 849 203 0 6 chr3 32854093 32854256 -185182902 - AluJo SINE Alu -150 162 1 1041 163 44 5 chr3 32854456 32854659 -185182499 + L1ME2 LINE L1 5693 5903 -261 899 221 82 4 chr3 32854661 32854924 -185182234 - MSTD LTR MaLR -4 392 88 2330 106 0 0 chr3 32854925 32855237 -185181921 - AluSx SINE Alu 0 312 1 1033 130 7 0 chr3 32855497 32855666 -185181492 + AluSg/x SINE Alu 140 309 0 342 0 0 0 chr3 32856732 32856770 -185180388 + (A)n Simple_repeat Simple_repeat 1 38 0 312 301 49 14 chr3 32856796 32856939 -185180219 - MER103 DNA DNA -17 149 2 386 207 60 10 chr3 32856992 32857104 -185180054 + MER52C LTR ERV1 3 99 -1179 590 179 0 0 chr3 32857136 32857242 -185179916 - AluSg/x SINE Alu -9 301 196 4946 160 39 115 chr3 32857244 32858570 -185178588 + MER52A LTR ERV1 461 1755 0 251 152 0 0 chr3 32858856 32858902 -185178256 + LTR66 LTR ERVL 394 439 -171 228 216 0 0 chr3 32858904 32858955 -185178203 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 32179 54 7 1 chr3 32860167 32865074 -185172084 + L1PA3 LINE L1 1220 6153 -2 5695 51 4 23 chr3 32865092 32865783 -185171375 + L1PA5 LINE L1 5475 6152 -2 284 48 24 0 chr3 32865802 32865844 -185171314 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1330 148 33 86 chr3 32865845 32866276 -185170882 + Charlie1 DNA MER1_type 132 2761 0 964 65 0 0 chr3 32866357 32866480 -185170678 + L1PA4 LINE L1 6029 6151 -4 243 0 0 0 chr3 32868105 32868132 -185169026 + (T)n Simple_repeat Simple_repeat 1 27 0 217 182 23 0 chr3 32868988 32869032 -185168126 + (CA)n Simple_repeat Simple_repeat 1 45 0 225 304 252 7 chr3 32870283 32870418 -185166740 - MIR3 SINE MIR -11 197 30 838 233 93 43 chr3 32874261 32874583 -185162575 + MER113 DNA MER1_type? 136 473 -48 261 333 78 0 chr3 32874632 32874722 -185162436 - MIR3 SINE MIR -48 160 64 1244 223 49 21 chr3 32874758 32875086 -185162072 - MLT1E LTR MaLR -256 337 1 253 203 94 0 chr3 32875088 32875152 -185162006 + L1MC5 LINE L1 7859 7928 -33 1659 143 56 28 chr3 32875239 32875526 -185161632 + AluJb SINE Alu 1 295 -17 247 327 140 20 chr3 32875611 32875761 -185161397 - L2 LINE L2 -3 3269 3102 401 259 149 45 chr3 32875854 32876143 -185161015 + MLT1H1 LTR MaLR 1 319 -236 226 132 0 0 chr3 32876144 32876182 -185160976 + MLT1H1 LTR MaLR 489 526 -4 * 325 185 0 0 chr3 32876150 32876204 -185160954 + MLT1G1 LTR MaLR 541 594 -1 358 293 66 9 chr3 32877415 32877521 -185159637 - MIR3 SINE MIR -85 123 12 399 233 19 19 chr3 32877780 32877883 -185159275 - MIR SINE MIR -56 206 104 234 0 0 0 chr3 32877992 32878018 -185159140 + (T)n Simple_repeat Simple_repeat 1 26 0 406 148 333 9 chr3 32878372 32878480 -185158678 - MER5A DNA MER1_type -45 144 2 644 314 89 3 chr3 32879758 32880095 -185157063 + L1ME3A LINE L1 5477 5842 -279 522 197 179 0 chr3 32880139 32880256 -185156902 + L1ME3A LINE L1 6033 6170 0 242 208 0 0 chr3 32880314 32880362 -185156796 + L1MC4 LINE L1 6658 6705 -1337 2353 163 14 3 chr3 32880654 32881015 -185156143 + MLT1A1 LTR MaLR 1 365 0 579 270 6 31 chr3 32881549 32881712 -185155446 - MIR SINE MIR -16 246 88 226 325 74 49 chr3 32882011 32882174 -185154984 + MIR SINE MIR 84 250 -12 258 32 0 0 chr3 32882823 32882854 -185154304 + (GA)n Simple_repeat Simple_repeat 2 32 0 250 209 374 0 chr3 32883277 32883392 -185153766 + MER5A DNA MER1_type 9 166 -23 865 162 132 6 chr3 32884097 32884264 -185152894 - MER5A DNA MER1_type -1 188 1 334 120 27 0 chr3 32884952 32885027 -185152131 + (TA)n Simple_repeat Simple_repeat 2 78 0 24 0 0 0 chr3 32885035 32885059 -185152099 + AT_rich Low_complexity Low_complexity 1 24 0 555 277 242 18 chr3 32886401 32887102 -185150056 - L2 LINE L2 -13 3300 2454 297 290 89 32 chr3 32887645 32887769 -185149389 - MIR SINE MIR -130 132 2 1824 181 0 6 chr3 32888503 32888817 -185148341 - AluJo SINE Alu 0 312 1 598 242 140 69 chr3 32889407 32889984 -185147174 - MLT1H1 LTR MaLR 0 590 1 392 244 224 49 chr3 32890513 32890759 -185146399 + L2 LINE L2 3024 3312 -1 682 290 108 0 chr3 32891223 32891437 -185145721 + MIR SINE MIR 4 240 -22 348 257 83 35 chr3 32891835 32891979 -185145179 + MIR SINE MIR 16 166 -96 319 232 95 21 chr3 32892484 32892579 -185144579 + MIR SINE MIR 95 196 -66 606 251 72 39 chr3 32893466 32893673 -185143485 + MIR SINE MIR 14 227 -35 807 194 34 23 chr3 32893808 32893983 -185143175 - MIR3 SINE MIR -2 206 30 534 259 161 5 chr3 32894273 32894466 -185142692 - MIR SINE MIR -21 241 19 183 204 0 0 chr3 32894926 32894970 -185142188 + T-rich Low_complexity Low_complexity 1 44 0 22 56 0 0 chr3 32896410 32896446 -185140712 + AT_rich Low_complexity Low_complexity 1 36 0 418 322 23 12 chr3 32896841 32897012 -185140146 - MIR SINE MIR -19 243 71 2171 117 0 0 chr3 32897267 32897557 -185139601 - AluSx SINE Alu -22 290 1 924 135 0 0 chr3 32897557 32897690 -185139468 - AluSq/x SINE Alu -177 135 3 2064 104 0 4 chr3 32901822 32902090 -185135068 + AluSq SINE Alu 13 279 -34 363 44 0 0 chr3 32902094 32902139 -185135019 + (GAAA)n Simple_repeat Simple_repeat 2 46 0 342 307 137 0 chr3 32902319 32902472 -185134686 - MIR3 SINE MIR -5 203 30 357 320 58 0 chr3 32903462 32903565 -185133593 - L2 LINE L2 -8 3264 3156 783 136 55 1 chr3 32903607 32903760 -185133398 + L1M4 LINE L1 5352 5512 -672 1742 163 3 20 chr3 32906657 32906963 -185130195 - AluJo SINE Alu -11 301 1 800 285 131 33 chr3 32907207 32907553 -185129605 + Charlie8 DNA MER1_type 45 447 -1970 2021 113 0 42 chr3 32907553 32907862 -185129296 - AluSq SINE Alu -17 296 1 800 285 131 33 chr3 32907862 32907967 -185129191 + Charlie8 DNA MER1_type 447 540 -1877 291 54 0 0 chr3 32907968 32908005 -185129153 + (TC)n Simple_repeat Simple_repeat 1 37 0 1324 133 48 9 chr3 32908778 32908860 -185128298 + MER20 DNA MER1_type 1 78 -141 387 0 0 0 chr3 32908860 32908903 -185128255 + (TG)n Simple_repeat Simple_repeat 2 44 0 1324 133 48 9 chr3 32908903 32909030 -185128128 + MER20 DNA MER1_type 78 218 -1 284 210 12 0 chr3 32910563 32910644 -185126514 + GA-rich Low_complexity Low_complexity 1 82 0 336 24 0 0 chr3 32910750 32910791 -185126367 + (CA)n Simple_repeat Simple_repeat 2 42 0 222 91 0 0 chr3 32910950 32910983 -185126175 + (CCCCCA)n Simple_repeat Simple_repeat 2 34 0 201 343 30 30 chr3 32916052 32916151 -185121007 - L2 LINE L2 -3 3269 3171 180 0 0 0 chr3 32917622 32917642 -185119516 + (TA)n Simple_repeat Simple_repeat 2 21 0 329 330 8 25 chr3 32917644 32917762 -185119396 - MER5B DNA MER1_type -61 117 2 1060 284 56 62 chr3 32918213 32918678 -185118480 + MLT1J LTR MaLR 6 467 -44 396 218 79 0 chr3 32918678 32918779 -185118379 + MIR SINE MIR 131 239 -23 186 53 105 0 chr3 32918786 32918843 -185118315 + (TA)n Simple_repeat Simple_repeat 2 64 0 1564 294 134 24 chr3 32918845 32918892 -185118266 + L2 LINE L2 2128 2168 -1104 1109 206 53 0 chr3 32918892 32919101 -185118057 + MER58A DNA MER1_type 5 224 0 1564 294 134 24 chr3 32919101 32919887 -185117271 + L2 LINE L2 2168 3053 -219 295 277 142 27 chr3 32920730 32920878 -185116280 - MIR3 SINE MIR -3 205 41 254 209 45 30 chr3 32921273 32921340 -185115818 - MER103 DNA DNA -3 163 96 946 145 111 12 chr3 32922315 32922487 -185114671 + MER5A DNA MER1_type 1 189 0 220 302 16 0 chr3 32923215 32923278 -185113880 - MIR SINE MIR -32 230 167 25 97 0 0 chr3 32923303 32923334 -185113824 + AT_rich Low_complexity Low_complexity 1 31 0 626 210 9 101 chr3 32924082 32924138 -185113020 + L1MC4 LINE L1 7449 7509 -533 817 212 20 7 chr3 32924138 32924289 -185112869 + FRAM SINE Alu 1 153 -13 626 210 9 101 chr3 32924289 32924451 -185112707 + L1MC4 LINE L1 7509 7647 -395 * 964 155 20 50 chr3 32924420 32924620 -185112538 + L1MA7 LINE L1 5851 6044 -247 706 165 76 0 chr3 32924623 32924781 -185112377 + L1MA9 LINE L1 6137 6306 -6 244 255 20 61 chr3 32924799 32924897 -185112261 + L1MC4a LINE L1 7532 7625 -183 1250 187 53 62 chr3 32925012 32925349 -185111809 + L1MC4 LINE L1 7708 8041 -1 204 309 0 0 chr3 32927124 32927179 -185109979 - MIR SINE MIR -149 113 59 2428 53 0 0 chr3 32927698 32928015 -185109143 + AluY SINE Alu 1 317 0 534 267 184 9 chr3 32928390 32928607 -185108551 - MIR SINE MIR 0 262 8 186 316 0 0 chr3 32929051 32929108 -185108050 - MIR SINE MIR -15 247 191 2312 92 0 19 chr3 32929114 32929431 -185107727 - AluSx SINE Alu -1 311 1 26 0 0 0 chr3 32929438 32929464 -185107694 + AT_rich Low_complexity Low_complexity 1 26 0 228 330 55 0 chr3 32929480 32929571 -185107587 - MIR SINE MIR -74 188 93 404 271 53 26 chr3 32929947 32930118 -185107040 - L1MC/D LINE L1 -332 5789 5621 770 244 123 36 chr3 32930918 32931250 -185105908 + L1ME4a LINE L1 5758 6118 -3 494 203 87 14 chr3 32931932 32932070 -185105088 - MER5A DNA MER1_type -41 148 1 2371 103 3 0 chr3 32932421 32932723 -185104435 + AluSx SINE Alu 1 303 -9 518 246 16 0 chr3 32932996 32933118 -185104040 - MER5C DNA MER1_type -200 124 1 193 333 17 0 chr3 32933321 32933381 -185103777 + L2 LINE L2 3253 3313 0 22 0 0 0 chr3 32933789 32933811 -185103347 + AT_rich Low_complexity Low_complexity 1 22 0 258 262 79 35 chr3 32934008 32934195 -185102963 - MIR SINE MIR 0 262 7 205 182 0 0 chr3 32934498 32934531 -185102627 + (CA)n Simple_repeat Simple_repeat 1 33 0 234 0 0 0 chr3 32934612 32934638 -185102520 + (TA)n Simple_repeat Simple_repeat 2 27 0 25 31 0 0 chr3 32936811 32936843 -185100315 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr3 32937105 32937133 -185100025 + AT_rich Low_complexity Low_complexity 1 28 0 354 293 127 6 chr3 32939014 32939171 -185097987 - MER5B DNA MER1_type 0 178 3 4523 82 8 7 chr3 32939446 32940033 -185097125 + L1PB1 LINE L1 5564 6151 0 226 229 0 21 chr3 32940949 32940997 -185096161 - L2 LINE L2 -16 3297 3251 787 303 138 10 chr3 32941238 32941820 -185095338 + L2 LINE L2 2626 3300 -13 241 308 221 0 chr3 32941844 32941948 -185095210 - MIR SINE MIR -109 153 27 207 0 0 0 chr3 32942092 32942115 -185095043 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 336 246 164 0 chr3 32942148 32942258 -185094900 + MIR SINE MIR 132 259 -3 420 274 94 0 chr3 32943070 32943187 -185093971 + MIR SINE MIR 2 129 -133 237 333 12 0 chr3 32944107 32944191 -185092967 + MIR SINE MIR 160 244 -18 21 0 0 0 chr3 32944198 32944219 -185092939 + GC_rich Low_complexity Low_complexity 1 21 0 534 233 192 0 chr3 32947133 32947279 -185089879 + MER5A DNA MER1_type 9 182 -7 828 245 90 10 chr3 32947629 32947829 -185089329 - MIR SINE MIR -3 259 44 204 276 112 71 chr3 32947853 32948023 -185089135 - MIR3 SINE MIR -11 197 21 459 258 126 6 chr3 32948420 32948587 -185088571 - MIR SINE MIR -9 253 67 246 311 22 22 chr3 32948612 32948702 -185088456 - MIR SINE MIR -67 141 52 1761 143 39 18 chr3 32948883 32949169 -185087989 + AluJb SINE Alu 1 292 -20 41761 55 8 33 chr3 32949274 32955211 -185081947 + L1P2 LINE L1 2 5774 -380 7669 43 24 0 chr3 32955328 32956988 -185080170 + L1PA5 LINE L1 4465 6150 -4 1064 168 10 10 chr3 32957576 32957772 -185079386 + MER20 DNA MER1_type 24 219 0 2162 118 10 3 chr3 32958074 32958371 -185078787 + AluSq SINE Alu 1 299 -14 282 287 36 90 chr3 32959052 32959139 -185078019 - MIR3 SINE MIR 0 208 133 2292 87 12 43 chr3 32959139 32959274 -185077884 + AluSx SINE Alu 1 139 -173 2257 112 0 3 chr3 32959274 32959579 -185077579 + AluSg SINE Alu 1 304 -6 2292 87 12 43 chr3 32959579 32959765 -185077393 + AluSx SINE Alu 139 312 0 282 287 36 90 chr3 32959765 32959844 -185077314 - MIR3 SINE MIR -75 133 51 488 264 84 53 chr3 32961125 32961352 -185075806 - MIR SINE MIR -12 250 17 302 279 0 0 chr3 32962367 32962435 -185074723 + L2 LINE L2 3205 3272 0 * 509 273 125 23 chr3 32962384 32962600 -185074558 - MIR SINE MIR -21 241 4 1254 253 87 35 chr3 32962807 32963211 -185073947 + MLT1J2 LTR MaLR 24 448 -2 362 283 10 0 chr3 32963364 32963463 -185073695 + MIR3 SINE MIR 101 200 -8 2248 69 21 10 chr3 32963486 32963775 -185073383 + AluY SINE Alu 1 292 -19 53 30 0 0 chr3 32964217 32964284 -185072874 + AT_rich Low_complexity Low_complexity 1 67 0 2407 84 0 7 chr3 32965141 32965450 -185071708 + AluY SINE Alu 1 307 -4 183 222 0 0 chr3 32965474 32965519 -185071639 + T-rich Low_complexity Low_complexity 1 45 0 202 191 0 48 chr3 32965750 32965792 -185071366 - L2 LINE L2 -11 3302 3263 188 281 94 0 chr3 32965829 32965893 -185071265 - MIR SINE MIR -36 226 157 277 259 0 0 chr3 32965905 32965963 -185071195 - MER5B DNA MER1_type -115 63 6 32 26 0 0 chr3 32966031 32966070 -185071088 + AT_rich Low_complexity Low_complexity 1 39 0 1518 140 24 113 chr3 32966144 32966472 -185070686 + AluJb SINE Alu 4 302 -10 353 137 0 0 chr3 32966886 32966937 -185070221 - MER5A DNA MER1_type 0 189 139 181 196 0 71 chr3 32966996 32967052 -185070106 + MER5A DNA MER1_type 136 187 -2 639 244 29 29 chr3 32967059 32967231 -185069927 + MER5B DNA MER1_type 7 178 0 626 188 24 79 chr3 32967238 32967366 -185069792 - MER5B DNA MER1_type -14 164 45 1927 155 0 0 chr3 32967366 32967657 -185069501 + AluJb SINE Alu 1 291 -21 626 188 24 79 chr3 32967657 32967693 -185069465 - MER5B DNA MER1_type -133 45 9 210 233 17 17 chr3 32968057 32968117 -185069041 + MIR SINE MIR 81 140 -68 242 304 0 0 chr3 32968640 32968719 -185068439 + (ATGGTG)n Simple_repeat Simple_repeat 5 83 0 551 236 16 47 chr3 32970657 32970848 -185066310 + L1MC4 LINE L1 7858 8042 0 340 256 50 89 chr3 32971214 32971573 -185065585 + L1ME4a LINE L1 5531 5875 -246 293 347 10 0 chr3 32971942 32972040 -185065118 - MIR3 SINE MIR -17 191 93 411 283 19 8 chr3 32972134 32972315 -185064843 + L1M4 LINE L1 5240 5420 -742 925 209 65 23 chr3 32973913 32974128 -185063030 + MER58A DNA MER1_type 1 224 0 517 337 32 4 chr3 32975054 32975306 -185061852 + Charlie8 DNA MER1_type 3 261 -2156 968 161 17 11 chr3 32975646 32975820 -185061338 + AluJb SINE Alu 138 312 0 21 0 0 0 chr3 32976374 32976395 -185060763 + AT_rich Low_complexity Low_complexity 1 21 0 433 270 224 0 chr3 32976502 32976654 -185060504 + MER5A DNA MER1_type 4 189 0 252 298 31 78 chr3 32976983 32977174 -185059984 + MIR SINE MIR 7 188 -74 423 345 57 23 chr3 32977370 32977547 -185059611 + L2 LINE L2 3090 3272 0 412 139 0 14 chr3 32978273 32978345 -185058813 + MLT1K LTR MaLR 516 586 -2 251 301 197 5 chr3 32979795 32980008 -185057150 - L2 LINE L2 -573 2741 2488 200 260 68 41 chr3 32980015 32980088 -185057070 - L2 LINE L2 -47 3225 3151 432 295 240 18 chr3 32980384 32980498 -185056660 + L3 LINE CR1 901 988 -589 719 181 0 9 chr3 32980498 32980774 -185056384 + FLAM_A SINE Alu 1 275 0 432 295 240 18 chr3 32980774 32980985 -185056173 + L3 LINE CR1 988 1302 -275 284 363 44 39 chr3 32981968 32982150 -185055008 - L2 LINE L2 -402 2912 2730 386 127 127 0 chr3 32982248 32982319 -185054839 + MADE1 DNA Mariner 1 80 0 244 260 192 41 chr3 32983416 32983562 -185053596 + MIR SINE MIR 39 206 -56 222 241 0 37 chr3 32984678 32984732 -185052426 + CT-rich Low_complexity Low_complexity 3 54 0 222 37 0 0 chr3 32985409 32985436 -185051722 + (TG)n Simple_repeat Simple_repeat 1 27 0 2063 153 0 0 chr3 32986098 32986398 -185050760 - AluSx SINE Alu -12 300 1 463 167 0 0 chr3 32986656 32986728 -185050430 - FLAM SINE Alu -29 114 43 631 204 8 8 chr3 32986991 32987123 -185050035 - MER119 DNA MER1_type 0 583 452 408 300 67 0 chr3 32987126 32987246 -185049912 - MER119 DNA MER1_type -455 128 1 829 165 94 0 chr3 32987829 32987999 -185049159 - MER5A DNA MER1_type -1 188 3 553 211 186 0 chr3 32988889 32989045 -185048113 + MER5A DNA MER1_type 5 189 0 197 282 103 0 chr3 32989287 32989365 -185047793 - L3b LINE CR1 -396 1187 1102 189 271 51 76 chr3 32989707 32989825 -185047333 + L2 LINE L2 3154 3268 -4 425 196 98 127 chr3 32990185 32990358 -185046800 + MER5B DNA MER1_type 10 177 -1 669 286 162 53 chr3 32990384 32991020 -185046138 + L2 LINE L2 2615 3308 -5 738 212 8 86 chr3 32991188 32991433 -185045725 + L1MB7 LINE L1 5949 6174 -10 238 266 86 55 chr3 32992361 32992489 -185044669 - MIR SINE MIR -76 132 1 2283 93 0 0 chr3 32992787 32993067 -185044091 + AluSx SINE Alu 1 280 -32 261 57 0 0 chr3 32993067 32993102 -185044056 + (CAAAA)n Simple_repeat Simple_repeat 5 39 0 548 225 0 0 chr3 32993242 32993353 -185043805 + MIR SINE MIR 152 262 0 331 281 21 115 chr3 32994455 32994690 -185042468 - MIR SINE MIR 0 262 50 378 277 164 6 chr3 32994763 32994922 -185042236 - MIR SINE MIR -56 206 23 373 235 223 6 chr3 32995640 32995806 -185041352 + LTR50 LTR ERVL 2 203 -592 477 299 117 6 chr3 32995860 32996188 -185040970 + LTR50 LTR ERVL 345 795 0 245 157 0 20 chr3 32997020 32997071 -185040087 + MADE1 DNA Mariner 1 50 -30 362 111 0 0 chr3 32997102 32997156 -185040002 + MADE1 DNA Mariner 26 79 -1 1822 181 0 20 chr3 32997572 32997876 -185039282 + AluJo SINE Alu 2 299 -13 851 316 103 58 chr3 32998192 32999303 -185037855 + L1MC4a LINE L1 2816 3975 -2171 299 304 42 6 chr3 32999330 32999498 -185037660 + L1MC4a LINE L1 4674 4847 -1299 486 230 28 51 chr3 32999804 33000021 -185037137 + L1MC4a LINE L1 5736 5947 -1861 242 56 28 0 chr3 33000185 33000221 -185036937 + (CAATA)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr3 33000331 33000352 -185036806 + AT_rich Low_complexity Low_complexity 1 21 0 459 209 147 31 chr3 33000480 33000643 -185036515 - L2 LINE L2 0 3313 3132 543 246 56 26 chr3 33000739 33000934 -185036224 - Charlie8 DNA MER1_type -2180 237 37 283 315 64 46 chr3 33001181 33001238 -185035920 + MARNA DNA Mariner 286 340 -246 2224 54 15 97 chr3 33001238 33001569 -185035589 + AluY SINE Alu 1 304 -7 283 315 64 46 chr3 33001569 33001730 -185035428 + MARNA DNA Mariner 340 508 -78 238 357 0 0 chr3 33002420 33002490 -185034668 - L2 LINE L2 -15 3257 3188 195 68 23 45 chr3 33002508 33002552 -185034606 + (CAATA)n Simple_repeat Simple_repeat 3 45 0 438 328 90 17 chr3 33002713 33003079 -185034079 - L2 LINE L2 -222 3050 2655 1022 301 75 72 chr3 33003081 33004125 -185033033 - L2 LINE L2 -1084 2230 1184 443 272 76 38 chr3 33004156 33004314 -185032844 + MIR3 SINE MIR 35 198 -10 27 49 0 0 chr3 33004376 33004417 -185032741 + AT_rich Low_complexity Low_complexity 1 41 0 833 212 45 0 chr3 33004693 33004872 -185032286 - MER58A DNA MER1_type 0 224 38 442 273 52 38 chr3 33005883 33006059 -185031099 - MIR SINE MIR -58 150 3 450 237 160 30 chr3 33006064 33006233 -185030925 - MIR3 SINE MIR -14 194 4 207 0 0 0 chr3 33006774 33006797 -185030361 + (T)n Simple_repeat Simple_repeat 1 23 0 1383 166 59 7 chr3 33007041 33007312 -185029846 - L1MB8 LINE L1 -9 6169 5885 3267 252 116 85 chr3 33007708 33008374 -185028784 + L2 LINE L2 1165 1808 -1505 2433 78 7 7 chr3 33008374 33008682 -185028476 + AluSc SINE Alu 1 308 -1 3267 252 116 85 chr3 33008682 33010095 -185027063 + L2 LINE L2 1808 3305 -8 630 321 72 9 chr3 33010405 33010626 -185026532 - MIR SINE MIR -27 235 1 317 304 8 40 chr3 33010733 33010858 -185026300 + L2 LINE L2 3189 3309 -4 445 284 226 0 chr3 33011189 33011397 -185025761 + L2 LINE L2 2705 2959 -355 308 310 50 0 chr3 33011401 33011501 -185025657 - MIR SINE MIR -62 146 42 21 36 0 0 chr3 33012622 33012650 -185024508 + AT_rich Low_complexity Low_complexity 1 28 0 261 258 45 0 chr3 33012811 33012900 -185024258 + L1ME LINE L1 5666 5758 -363 187 133 44 0 chr3 33014070 33014115 -185023043 + GA-rich Low_complexity Low_complexity 2 48 0 1756 243 153 31 chr3 33014432 33014606 -185022552 + HAL1b LINE L1 127 278 -1070 2884 136 15 2 chr3 33014606 33015085 -185022073 + MER31A LTR ERV1 1 485 0 1756 243 153 31 chr3 33015085 33015972 -185021186 + HAL1b LINE L1 278 1318 -30 25 65 0 0 chr3 33015991 33016037 -185021121 + AT_rich Low_complexity Low_complexity 1 46 0 405 0 0 0 chr3 33016432 33016477 -185020681 + (CA)n Simple_repeat Simple_repeat 1 45 0 277 204 0 19 chr3 33016484 33016538 -185020620 - AluJ/FRAM SINE Alu -31 271 219 363 136 0 0 chr3 33016539 33016598 -185020560 + (CA)n Simple_repeat Simple_repeat 1 59 0 1669 167 0 39 chr3 33016609 33016891 -185020267 - AluJo SINE Alu -41 271 1 334 360 80 0 chr3 33017846 33017996 -185019162 + MIR3 SINE MIR 30 191 -17 197 0 0 67 chr3 33018935 33018965 -185018193 + (TTTAA)n Simple_repeat Simple_repeat 5 32 0 1629 198 3 13 chr3 33019218 33019556 -185017602 + AluJo SINE Alu 3 312 0 219 36 0 0 chr3 33020285 33020313 -185016845 + (CA)n Simple_repeat Simple_repeat 2 29 0 410 215 66 66 chr3 33020390 33020511 -185016647 - L2 LINE L2 -1 3312 3192 867 230 60 57 chr3 33020696 33021027 -185016131 + MER46C DNA MER2_type 7 338 0 355 57 0 19 chr3 33021354 33021407 -185015751 + MER113 DNA MER1_type? 142 193 -328 231 200 15 31 chr3 33021702 33021767 -185015391 + CT-rich Low_complexity Low_complexity 2 65 0 22 35 0 0 chr3 33022396 33022425 -185014733 + AT_rich Low_complexity Low_complexity 1 29 0 197 338 44 0 chr3 33022496 33022564 -185014594 + MIR3 SINE MIR 115 185 -23 292 299 21 70 chr3 33022908 33023095 -185014063 - MER5B DNA MER1_type 0 178 1 523 336 57 16 chr3 33023536 33023783 -185013375 + MIR SINE MIR 6 262 0 1072 169 12 0 chr3 33024352 33024524 -185012634 + MER20 DNA MER1_type 31 204 -15 987 210 16 0 chr3 33024531 33024717 -185012441 - MER5A DNA MER1_type 0 189 1 230 344 199 23 chr3 33025368 33025624 -185011534 + L3b LINE CR1 1254 1554 -29 202 374 86 22 chr3 33025822 33025961 -185011197 + L2 LINE L2 3121 3268 -4 1673 206 3 0 chr3 33025993 33026299 -185010859 - AluJo SINE Alu -5 307 1 1361 65 0 6 chr3 33026538 33026708 -185010450 - AluY SINE Alu -12 299 131 272 258 43 62 chr3 33026812 33027068 -185010090 + L1M4 LINE L1 3053 3303 -2843 21 0 0 0 chr3 33027106 33027127 -185010031 + AT_rich Low_complexity Low_complexity 1 21 0 1248 271 91 35 chr3 33027134 33027781 -185009377 + L1M4 LINE L1 3289 3971 -2175 2255 197 14 7 chr3 33027800 33028226 -185008932 - MER88 LTR ERVL -35 429 1 251 295 70 39 chr3 33028447 33028576 -185008582 + L2 LINE L2 2932 3064 -208 1004 190 27 0 chr3 33028948 33029132 -185008026 + MER5A DNA MER1_type 1 189 0 2747 10 0 7 chr3 33029171 33029476 -185007682 + AluYb8 SINE Alu 1 303 -15 182 260 14 0 chr3 33030416 33030489 -185006669 + GA-rich Low_complexity Low_complexity 2 75 0 220 297 0 16 chr3 33030753 33030817 -185006341 + (CATATA)n Simple_repeat Simple_repeat 5 67 0 197 65 32 0 chr3 33030821 33030852 -185006306 + (TG)n Simple_repeat Simple_repeat 2 33 0 379 265 31 60 chr3 33031342 33031563 -185005595 + MLT1J LTR MaLR 235 475 -36 303 285 73 33 chr3 33031672 33031823 -185005335 + MIR SINE MIR 20 176 -86 2152 55 3 93 chr3 33031922 33032276 -185004882 + AluY SINE Alu 1 326 0 206 171 24 0 chr3 33032465 33032506 -185004652 + GA-rich Low_complexity Low_complexity 3 44 0 194 179 77 0 chr3 33033810 33033849 -185003309 + MIR SINE MIR 111 152 -56 2121 52 0 4 chr3 33034733 33034983 -185002175 - AluY SINE Alu -13 298 50 22 0 0 0 chr3 33036189 33036211 -185000947 + AT_rich Low_complexity Low_complexity 1 22 0 732 310 22 4 chr3 33037286 33037518 -184999640 - MIR SINE MIR -9 253 18 498 129 0 0 chr3 33038325 33038410 -184998748 + (TCC)n Simple_repeat Simple_repeat 3 87 0 203 0 0 36 chr3 33038412 33038440 -184998718 + (TC)n Simple_repeat Simple_repeat 2 28 0 560 322 98 13 chr3 33038575 33038984 -184998174 - L1MC/D LINE L1 -485 5636 5317 183 80 0 0 chr3 33039154 33039179 -184997979 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 342 174 23 12 chr3 33039190 33039243 -184997915 - L1MB1 LINE L1 -4 6185 6129 1918 150 7 13 chr3 33039243 33039543 -184997615 - AluSx SINE Alu -12 300 3 342 174 23 12 chr3 33039543 33039575 -184997583 - L1MB1 LINE L1 -60 6129 6099 1159 252 79 87 chr3 33039575 33040094 -184997064 + MLT1H LTR MaLR 13 527 -22 1113 262 159 11 chr3 33040244 33040698 -184996460 - LTR33A LTR ERVL 0 523 3 217 354 73 48 chr3 33040831 33041147 -184996011 - L2 LINE L2 -338 2976 2653 477 286 79 11 chr3 33041610 33041788 -184995370 - MER117 DNA MER1_type -7 190 1 326 79 53 0 chr3 33041908 33041984 -184995174 + (TA)n Simple_repeat Simple_repeat 2 81 0 515 197 22 164 chr3 33042630 33042904 -184994254 + MER112 DNA MER1_type 19 253 -7 476 186 62 87 chr3 33043522 33043683 -184993475 + MIR SINE MIR 106 262 0 472 230 36 7 chr3 33043810 33043949 -184993209 + L1MA10 LINE L1 6181 6323 -11 25 31 0 0 chr3 33043961 33043993 -184993165 + AT_rich Low_complexity Low_complexity 1 32 0 437 293 106 34 chr3 33043993 33044504 -184992654 + L1ME3A LINE L1 1687 2260 -4136 1781 251 66 22 chr3 33044642 33045367 -184991791 + L1ME3A LINE L1 2403 3159 -3056 2529 253 74 39 chr3 33045480 33047391 -184989767 + L1ME3A LINE L1 4251 6232 -7 629 219 101 25 chr3 33047785 33048023 -184989135 + MER112 DNA MER1_type 1 256 0 197 125 25 25 chr3 33048035 33048075 -184989083 + L2 LINE L2 3269 3308 -5 494 259 51 28 chr3 33049239 33049455 -184987703 + L1ME4a LINE L1 5859 6079 -42 829 72 0 0 chr3 33050555 33050666 -184986492 - L1P3 LINE L1 -336 5818 5708 2168 91 10 0 chr3 33050666 33050963 -184986195 + L1PA13 LINE L1 5860 6160 -3 232 206 0 109 chr3 33051433 33051525 -184985633 + L1MC4a LINE L1 6964 7045 -763 * 2724 205 28 23 chr3 33051522 33052166 -184984992 + L1MC4 LINE L1 7216 7862 -180 2195 199 30 7 chr3 33052449 33052856 -184984302 - MLT-int LTR MaLR -36 1699 1284 240 181 36 72 chr3 33052918 33053001 -184984157 - MLT-int LTR MaLR -980 755 676 227 279 0 44 chr3 33053060 33053128 -184984030 - MLT1-int LTR MaLR -488 883 819 804 137 123 0 chr3 33053150 33053296 -184983862 - MLT1-int LTR MaLR -1567 168 5 355 280 91 42 chr3 33053773 33053916 -184983242 - MIR3 SINE MIR -15 193 44 243 79 0 0 chr3 33053920 33053958 -184983200 + (A)n Simple_repeat Simple_repeat 1 38 0 242 312 18 0 chr3 33054270 33054379 -184982779 - L1MC/D LINE L1 -2000 5808 5698 803 266 39 13 chr3 33054458 33054691 -184982467 + L2 LINE L2 3075 3313 0 469 373 78 23 chr3 33054696 33055264 -184981894 - L1MC/D LINE L1 -815 5331 4733 2566 226 11 16 chr3 33055592 33056141 -184981017 - MLT1H1 LTR MaLR 0 555 10 326 281 135 17 chr3 33056707 33056885 -184980273 - MIR SINE MIR -1 261 63 474 214 0 0 chr3 33056904 33056993 -184980165 + MER5A DNA MER1_type 10 98 -91 184 233 0 0 chr3 33057063 33057106 -184980052 - MER5B DNA MER1_type -3 175 133 610 219 22 51 chr3 33057141 33057278 -184979880 - MER5B DNA MER1_type -45 133 1 505 169 0 22 chr3 33057467 33057556 -184979602 - MER5B DNA MER1_type -90 88 2 547 259 116 11 chr3 33057556 33057745 -184979413 - Charlie8 DNA MER1_type -2185 232 24 332 237 11 32 chr3 33058593 33058686 -184978472 - MIR SINE MIR 0 262 172 * 1189 246 126 53 chr3 33058670 33059276 -184977882 + L2 LINE L2 2667 3313 0 435 250 62 14 chr3 33059274 33059418 -184977740 - MIR SINE MIR -65 197 47 * 195 235 0 0 chr3 33060942 33060976 -184976182 - L2 LINE L2 -17 3255 3222 582 312 74 2 chr3 33061028 33061218 -184975940 - MIR SINE MIR -55 207 7 2203 105 0 14 chr3 33063194 33063490 -184973668 - AluSc SINE Alu -12 297 6 188 324 176 19 chr3 33063631 33063739 -184973419 - L2 LINE L2 -4 3309 3185 23 0 0 0 chr3 33065432 33065455 -184971703 + AT_rich Low_complexity Low_complexity 1 23 0 617 105 0 0 chr3 33065455 33065541 -184971617 - FLAM_A SINE Alu -20 122 37 229 325 159 12 chr3 33065659 33065822 -184971336 - MIR SINE MIR -27 235 49 2491 219 36 16 chr3 33066069 33066709 -184970449 - MER97c DNA MER1_type? -437 653 1 538 331 22 6 chr3 33067365 33067546 -184969612 - MIR SINE MIR -76 186 3 21 57 0 0 chr3 33067850 33067885 -184969273 + AT_rich Low_complexity Low_complexity 1 35 0 572 274 8 0 chr3 33068622 33068746 -184968412 + MER63A DNA MER1_type 51 175 -35 270 314 20 29 chr3 33069107 33069209 -184967949 - MIR3 SINE MIR -54 154 54 2752 119 16 5 chr3 33070088 33070517 -184966641 + MER57B LTR ERV1 1 434 0 41 58 0 0 chr3 33071686 33071755 -184965403 + AT_rich Low_complexity Low_complexity 1 69 0 191 98 0 103 chr3 33071758 33071942 -184965216 + (TATAA)n Simple_repeat Simple_repeat 5 169 0 25 31 0 0 chr3 33071952 33071984 -184965174 + AT_rich Low_complexity Low_complexity 1 32 0 198 311 54 0 chr3 33072110 33072184 -184964974 - MIR SINE MIR -82 180 103 216 0 0 0 chr3 33072200 33072224 -184964934 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 619 325 83 20 chr3 33072587 33072935 -184964223 + L1MEc LINE L1 92 461 -5935 324 273 196 59 chr3 33073308 33073353 -184963805 + MLT1K LTR MaLR 2 39 -549 1496 167 4 30 chr3 33073353 33073616 -184963542 - AluJb SINE Alu -16 296 41 324 273 196 59 chr3 33073616 33073907 -184963251 + MLT1K LTR MaLR 39 384 -204 245 260 181 8 chr3 33074136 33074263 -184962895 + MIR3 SINE MIR 57 205 -3 337 265 10 20 chr3 33075372 33075474 -184961684 - MIR SINE MIR -34 228 128 207 208 21 0 chr3 33075532 33075580 -184961578 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 21 36 0 0 chr3 33075652 33075680 -184961478 + AT_rich Low_complexity Low_complexity 1 28 0 258 284 34 0 chr3 33076490 33076578 -184960580 + MER94 DNA DNA 41 131 -3 283 362 83 24 chr3 33076608 33076862 -184960296 + L2 LINE L2 2656 2924 -390 298 242 89 24 chr3 33077105 33077229 -184959929 - MIR SINE MIR -50 212 81 2397 97 0 0 chr3 33077246 33077544 -184959614 + AluSc SINE Alu 1 298 -11 188 273 41 103 chr3 33078847 33079041 -184958117 + L2 LINE L2 2494 2675 -639 * 340 405 136 14 chr3 33079012 33079358 -184957800 + L2 LINE L2 2847 3234 -38 243 0 0 0 chr3 33079362 33079389 -184957769 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 212 100 25 0 chr3 33079433 33079473 -184957685 + (TCCA)n Simple_repeat Simple_repeat 4 44 0 40 0 0 0 chr3 33080401 33080441 -184956717 + AT_rich Low_complexity Low_complexity 1 40 0 303 329 68 4 chr3 33080799 33081036 -184956122 - L1ME4a LINE L1 -237 5884 5633 598 64 11 43 chr3 33081461 33081555 -184955603 + L1PA11 LINE L1 6084 6174 0 369 298 48 0 chr3 33082343 33082467 -184954691 + L2 LINE L2 2929 3058 -255 318 250 60 69 chr3 33082591 33082807 -184954351 + MER112 DNA MER1_type 33 246 -14 204 281 260 0 chr3 33082861 33082957 -184954201 + L2 LINE L2 3193 3313 0 1075 191 5 0 chr3 33083822 33084010 -184953148 - MER5A DNA MER1_type 0 189 1 1135 202 9 5 chr3 33084018 33084236 -184952922 + MER20 DNA MER1_type 1 219 0 765 311 79 65 chr3 33084905 33085759 -184951399 + L2 LINE L2 2358 3245 -27 1229 292 83 12 chr3 33086031 33086510 -184950648 - L2 LINE L2 -408 2906 2394 186 252 217 17 chr3 33086512 33086627 -184950531 + L2 LINE L2 2991 3128 -144 335 315 109 11 chr3 33087439 33087640 -184949518 - MIR SINE MIR -40 222 7 181 330 117 19 chr3 33087681 33087784 -184949374 - L3 LINE CR1 -160 1417 1305 416 297 68 40 chr3 33087961 33088183 -184948975 - L3 LINE CR1 -274 1303 1076 21 0 0 0 chr3 33089680 33089701 -184947457 + AT_rich Low_complexity Low_complexity 1 21 0 193 244 12 12 chr3 33089709 33089791 -184947367 + CT-rich Low_complexity Low_complexity 3 84 0 240 318 173 17 chr3 33090254 33090433 -184946725 + L2 LINE L2 2993 3199 -73 370 258 167 0 chr3 33090562 33090694 -184946464 + MIR SINE MIR 84 237 -25 225 83 0 0 chr3 33090978 33091014 -184946144 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 1465 196 0 8 chr3 33091140 33091400 -184945758 + AluJo SINE Alu 1 258 -54 195 42 0 0 chr3 33091425 33091449 -184945709 + (GGAA)n Simple_repeat Simple_repeat 3 26 0 435 287 103 35 chr3 33091877 33092051 -184945107 + L2 LINE L2 3120 3305 -8 2201 232 76 16 chr3 33092399 33093071 -184944087 + L1ME3 LINE L1 5421 6132 -30 255 224 78 9 chr3 33094760 33094876 -184942282 - MER113 DNA MER1_type? -307 214 91 1154 171 68 62 chr3 33095095 33095417 -184941741 + MER33 DNA MER1_type 1 324 0 616 232 161 0 chr3 33096810 33096965 -184940193 - MER5A DNA MER1_type -6 183 4 2138 128 0 7 chr3 33098770 33099060 -184938098 + AluSx SINE Alu 1 288 -24 2286 119 0 0 chr3 33099598 33099901 -184937257 - AluSx SINE Alu -9 303 1 192 311 16 33 chr3 33099937 33099998 -184937160 + L2 LINE L2 3201 3260 -12 2286 113 0 0 chr3 33100122 33100424 -184936734 - AluSg SINE Alu -4 306 5 827 273 73 55 chr3 33100876 33101220 -184935938 - L2 LINE L2 -4 3309 2960 369 281 201 35 chr3 33101287 33101686 -184935472 + L1ME LINE L1 5255 5600 -521 712 335 46 44 chr3 33101748 33102252 -184934906 + L2 LINE L2 2283 2787 -527 2097 136 0 3 chr3 33102665 33102966 -184934192 - AluSx SINE Alu -12 300 1 463 167 0 0 chr3 33103224 33103296 -184933862 - FLAM SINE Alu -29 114 43 631 204 8 8 chr3 33103559 33103691 -184933467 - MER119 DNA MER1_type 0 583 452 343 244 96 17 chr3 33103694 33103809 -184933349 - MER119 DNA MER1_type -455 128 5 6594 55 30 1 chr3 33104299 33105272 -184931886 + L1P LINE L1 3208 4208 -1938 307 349 94 7 chr3 33106094 33106243 -184930915 + MIR3 SINE MIR 30 191 -17 1482 288 178 31 chr3 33106915 33108219 -184928939 - L2 LINE L2 -8 3305 1817 389 276 92 32 chr3 33108812 33108997 -184928161 + L2 LINE L2 3071 3266 -6 22 35 0 0 chr3 33109242 33109271 -184927887 + AT_rich Low_complexity Low_complexity 1 29 0 1749 100 0 58 chr3 33109882 33110143 -184927015 - AluY SINE Alu -65 246 1 353 267 61 8 chr3 33110447 33110578 -184926580 + Charlie8 DNA MER1_type 37 174 -2243 724 183 120 40 chr3 33160940 33161115 -184876043 + MER5A DNA MER1_type 1 189 0 459 267 148 29 chr3 33161495 33161847 -184875311 - L1M4 LINE L1 -319 5802 5446 471 280 19 55 chr3 33162263 33162429 -184874729 + MIR SINE MIR 14 183 -67 709 269 39 0 chr3 33162435 33162617 -184874541 + MIR SINE MIR 8 196 -66 222 150 0 0 chr3 33162619 33162659 -184874499 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 284 208 26 39 chr3 33164746 33164823 -184872335 - L2 LINE L2 -6 3307 3232 184 170 62 9 chr3 33165766 33165878 -184871280 + (TA)n Simple_repeat Simple_repeat 2 119 0 554 256 249 7 chr3 33165892 33166197 -184870961 + L3 LINE CR1 429 807 -770 851 109 0 47 chr3 33166209 33166337 -184870821 - FLAM_C SINE Alu -19 124 3 216 281 49 0 chr3 33166341 33166423 -184870735 + L3 LINE CR1 796 881 -696 400 282 14 21 chr3 33166889 33167031 -184870127 + L1ME3 LINE L1 4881 5021 -1125 279 0 0 0 chr3 33167787 33167818 -184869340 + (CA)n Simple_repeat Simple_repeat 2 32 0 848 266 84 62 chr3 33167844 33168460 -184868698 + L1ME3 LINE L1 5320 5949 -213 469 333 50 50 chr3 33168961 33169222 -184867936 + L3 LINE CR1 1011 1271 -306 589 247 7 39 chr3 33169593 33169694 -184867464 + MIR SINE MIR 63 159 -103 2389 183 49 10 chr3 33169694 33170180 -184866978 + MLT1D LTR MaLR 1 505 0 589 247 7 39 chr3 33170180 33170232 -184866926 + MIR SINE MIR 159 211 -51 186 103 0 0 chr3 33172990 33173019 -184864139 + (CA)n Simple_repeat Simple_repeat 1 29 0 252 127 45 36 chr3 33173572 33173682 -184863476 + (TA)n Simple_repeat Simple_repeat 1 111 0 2862 132 48 2 chr3 33173685 33174184 -184862974 + L1MA4 LINE L1 5774 6295 -5 27 0 0 0 chr3 33174601 33174628 -184862530 + AT_rich Low_complexity Low_complexity 1 27 0 351 0 0 0 chr3 33175022 33175061 -184862097 + (TG)n Simple_repeat Simple_repeat 1 39 0 988 229 76 89 chr3 33175401 33175864 -184861294 - LTR16A1 LTR ERVL 0 457 1 970 341 152 34 chr3 33176128 33176916 -184860242 - L3 LINE CR1 -104 1473 593 21 0 0 0 chr3 33177045 33177066 -184860092 + AT_rich Low_complexity Low_complexity 1 21 0 1378 265 64 12 chr3 33177370 33177900 -184859258 - MLT1E LTR MaLR -3 590 1 434 238 18 39 chr3 33178749 33178917 -184858241 - MIR SINE MIR 0 262 44 2459 68 7 3 chr3 33179066 33179376 -184857782 + AluSp SINE Alu 1 311 -2 2100 118 7 3 chr3 33179425 33179713 -184857445 + AluSc SINE Alu 2 290 -19 280 313 72 4 chr3 33179960 33180225 -184856933 + L1P LINE L1 3604 3886 -2260 451 387 22 9 chr3 33180254 33180484 -184856674 - MIR SINE MIR -27 235 3 790 310 152 49 chr3 33180517 33181128 -184856030 + L1ME4a LINE L1 3914 4461 -1685 1804 116 76 4 chr3 33181128 33181405 -184855753 - AluSq SINE Alu -14 299 3 790 310 152 49 chr3 33181405 33181809 -184855349 + L1ME4a LINE L1 4461 5033 -1113 27 0 0 0 chr3 33182117 33182144 -184855014 + AT_rich Low_complexity Low_complexity 1 27 0 339 293 68 0 chr3 33182215 33182348 -184854810 + L1ME4a LINE L1 5576 5717 -404 680 238 136 8 chr3 33182381 33182616 -184854542 + L1ME4a LINE L1 5781 6045 -76 811 234 42 5 chr3 33183282 33183474 -184853684 + MLT1D LTR MaLR 2 200 -305 22 0 0 0 chr3 33183619 33183641 -184853517 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 33183710 33183732 -184853426 + AT_rich Low_complexity Low_complexity 1 22 0 263 175 18 0 chr3 33186495 33186552 -184850606 + GA-rich Low_complexity Low_complexity 4 61 0 24 53 0 0 chr3 33187499 33187537 -184849621 + AT_rich Low_complexity Low_complexity 1 38 0 2368 88 0 10 chr3 33187749 33188054 -184849104 - AluSg SINE Alu -8 302 1 1065 209 17 13 chr3 33188650 33188884 -184848274 - MER96B DNA MER1_type? -182 235 1 450 273 62 14 chr3 33189480 33189689 -184847469 + L2 LINE L2 2298 2516 -798 727 282 73 29 chr3 33189711 33189956 -184847202 - MIR SINE MIR -2 260 5 * 808 337 35 37 chr3 33189951 33190408 -184846750 + L2 LINE L2 2520 2975 -339 373 163 146 10 chr3 33190556 33190671 -184846487 + L1MB8 LINE L1 5208 5335 -811 1725 171 28 36 chr3 33190671 33191058 -184846100 + L1MB8 LINE L1 5795 6178 0 194 311 54 81 chr3 33191262 33191410 -184845748 - MIR3 SINE MIR -1 207 64 252 0 0 0 chr3 33191624 33191652 -184845506 + (T)n Simple_repeat Simple_repeat 1 28 0 1782 169 0 20 chr3 33192563 33192865 -184844293 + AluJo SINE Alu 1 296 -16 202 188 0 62 chr3 33193101 33193181 -184843977 + A-rich Low_complexity Low_complexity 1 75 0 481 296 88 22 chr3 33193608 33193834 -184843324 + MER102a DNA MER1_type 74 314 -16 472 215 222 0 chr3 33194465 33194609 -184842549 - MER5A DNA MER1_type 0 189 14 33 25 0 0 chr3 33195441 33195481 -184841677 + AT_rich Low_complexity Low_complexity 1 40 0 6488 60 18 13 chr3 33195481 33196349 -184840809 - L1PA7 LINE L1 -7 6147 5275 678 315 22 9 chr3 33197709 33197941 -184839217 + MIR SINE MIR 28 262 0 506 283 163 0 chr3 33198357 33198615 -184838543 + L1ME4a LINE L1 5740 6039 -82 343 266 35 18 chr3 33198778 33198891 -184838267 + MIR3 SINE MIR 90 204 -4 1540 125 73 62 chr3 33199784 33200073 -184837085 - AluJo SINE Alu -20 292 1 2597 48 7 0 chr3 33200480 33200789 -184836369 + AluY SINE Alu 1 311 0 454 316 24 24 chr3 33200909 33201246 -184835912 - L1MEc LINE L1 -3776 2463 2144 350 308 66 25 chr3 33201555 33201841 -184835317 - HAL1 LINE L1 -744 1763 1466 1919 149 0 3 chr3 33201930 33202219 -184834939 - AluSx SINE Alu -24 288 1 657 234 89 40 chr3 33202364 33202612 -184834546 - HAL1 LINE L1 -2 2505 2246 253 234 31 88 chr3 33202649 33202841 -184834317 - HAL1 LINE L1 -1211 1296 1116 * 633 282 66 12 chr3 33202840 33203081 -184834077 - HAL1 LINE L1 -1749 758 505 14943 131 21 3 chr3 33203082 33205394 -184831764 - Tigger1 DNA MER2_type 0 2418 65 260 172 0 241 chr3 33205394 33205510 -184831648 - Tigger1 DNA MER2_type -2329 89 2 210 356 33 11 chr3 33205561 33205651 -184831507 + L2 LINE L2 2970 3061 -211 275 335 77 11 chr3 33206691 33206867 -184830291 - MIR SINE MIR -29 233 46 760 246 209 5 chr3 33206867 33207078 -184830080 + MIR SINE MIR 3 256 -6 2253 100 0 0 chr3 33207143 33207433 -184829725 - AluSx SINE Alu -22 290 1 378 299 220 4 chr3 33207452 33207693 -184829465 - L3 LINE CR1 -296 1281 989 936 182 6 0 chr3 33207716 33207875 -184829283 + MER5A DNA MER1_type 29 188 -1 710 337 57 12 chr3 33208014 33208346 -184828812 - L3 LINE CR1 -774 803 457 281 284 119 72 chr3 33208545 33208739 -184828419 - MIR SINE MIR -55 207 5 39 38 0 0 chr3 33209400 33209453 -184827705 + AT_rich Low_complexity Low_complexity 1 53 0 520 47 0 0 chr3 33209839 33209903 -184827255 - L1P LINE L1 -748 5424 5361 5597 50 3 30 chr3 33209903 33210635 -184826523 + L1PA7 LINE L1 5436 6151 -3 484 251 80 43 chr3 33210867 33211054 -184826104 - MER117 DNA MER1_type 0 197 4 28 71 0 0 chr3 33211748 33211804 -184825354 + AT_rich Low_complexity Low_complexity 1 56 0 212 186 23 0 chr3 33211979 33212022 -184825136 + (TATG)n Simple_repeat Simple_repeat 3 46 0 209 30 61 0 chr3 33212047 33212080 -184825078 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 325 225 134 82 chr3 33213540 33213606 -184823552 + MER112 DNA MER1_type 17 78 -182 297 0 0 0 chr3 33213606 33213639 -184823519 + (TG)n Simple_repeat Simple_repeat 1 33 0 325 225 134 82 chr3 33213639 33213803 -184823355 + MER112 DNA MER1_type 78 259 -1 531 220 164 19 chr3 33213933 33214092 -184823066 - MER5A DNA MER1_type -1 188 7 21 36 0 0 chr3 33214744 33214772 -184822386 + AT_rich Low_complexity Low_complexity 1 28 0 320 170 160 57 chr3 33214807 33214913 -184822245 + L2 LINE L2 3197 3313 0 226 363 0 0 chr3 33215071 33215151 -184822007 + GA-rich Low_complexity Low_complexity 2 81 0 856 171 4 152 chr3 33215376 33215534 -184821624 + MER20 DNA MER1_type 1 109 -110 2248 63 0 14 chr3 33215534 33215848 -184821310 + AluY SINE Alu 1 310 0 856 171 4 152 chr3 33215848 33215945 -184821213 + MER20 DNA MER1_type 109 219 0 1355 272 87 13 chr3 33216283 33216731 -184820427 + LTR16C LTR ERVL 5 485 -6 267 79 0 0 chr3 33217737 33217775 -184819383 + (T)n Simple_repeat Simple_repeat 1 38 0 188 262 0 0 chr3 33218021 33218063 -184819095 - L2 LINE L2 -88 3225 3184 21 0 0 0 chr3 33218353 33218374 -184818784 + AT_rich Low_complexity Low_complexity 1 21 0 586 338 29 0 chr3 33218749 33218953 -184818205 - MIR SINE MIR -12 250 41 252 0 0 0 chr3 33219001 33219029 -184818129 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 402 100 0 0 chr3 33219031 33219091 -184818067 + (TC)n Simple_repeat Simple_repeat 1 60 0 28 0 0 0 chr3 33219579 33219607 -184817551 + AT_rich Low_complexity Low_complexity 1 28 0 665 224 74 102 chr3 33220293 33220752 -184816406 + MLT1J1 LTR MaLR 1 446 0 1127 164 157 18 chr3 33220851 33221131 -184816027 + MER33 DNA MER1_type 6 324 0 986 196 16 0 chr3 33221156 33221340 -184815818 + MER58A DNA MER1_type 38 224 0 186 71 0 0 chr3 33221476 33221504 -184815654 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 264 351 170 25 chr3 33221944 33222297 -184814861 + L2 LINE L2 2574 2977 -337 190 279 0 0 chr3 33222436 33222479 -184814679 - MIR3 SINE MIR -45 163 121 1133 185 15 10 chr3 33222561 33222766 -184814392 + MER20 DNA MER1_type 1 206 -13 261 57 0 0 chr3 33223853 33223888 -184813270 + (CA)n Simple_repeat Simple_repeat 2 36 0 283 237 214 23 chr3 33223898 33224029 -184813129 - MER103 DNA DNA -7 159 4 21 0 0 0 chr3 33225409 33225430 -184811728 + AT_rich Low_complexity Low_complexity 1 21 0 1981 120 42 0 chr3 33225499 33225782 -184811376 + AluSc SINE Alu 9 303 -6 230 196 89 0 chr3 33226680 33226736 -184810422 + L2 LINE L2 3251 3311 -2 310 281 126 22 chr3 33226971 33227106 -184810052 - L2 LINE L2 0 3272 3124 647 303 8 90 chr3 33228673 33229029 -184808129 - L2 LINE L2 0 3313 2987 465 308 104 102 chr3 33231501 33232107 -184805051 + L1M2 LINE L1 445 1323 -5526 857 112 20 97 chr3 33234213 33234409 -184802749 - MER96B DNA MER1_type? -236 181 1 223 355 0 13 chr3 33234542 33234618 -184802540 - L2 LINE L2 -213 3059 2985 2739 196 69 44 chr3 33234878 33235531 -184801627 - MER45B DNA AcHobo -371 669 1 383 315 82 27 chr3 33235629 33235813 -184801345 - MIR SINE MIR -4 258 65 289 317 118 27 chr3 33236049 33236235 -184800923 + MLT1J2 LTR MaLR 241 443 -7 1344 217 19 5 chr3 33236383 33236811 -184800347 - L1ME3 LINE L1 0 6162 5617 699 256 15 15 chr3 33237776 33237971 -184799187 + MIR SINE MIR 53 247 -15 182 269 15 138 chr3 33238075 33238205 -184798953 - L2 LINE L2 -2 3311 3198 201 346 84 0 chr3 33238595 33238702 -184798456 + MIR3 SINE MIR 79 194 -14 29 28 0 0 chr3 33239001 33239037 -184798121 + AT_rich Low_complexity Low_complexity 1 36 0 212 322 130 55 chr3 33239499 33239645 -184797513 + MIR SINE MIR 100 256 -6 197 250 28 74 chr3 33239920 33240028 -184797130 + MIR SINE MIR 104 206 -56 851 204 72 152 chr3 33240500 33240688 -184796470 + L2 LINE L2 2889 3091 -222 963 202 5 5 chr3 33240688 33240876 -184796282 + MER5A DNA MER1_type 1 188 -1 851 204 72 152 chr3 33240876 33241147 -184796011 + L2 LINE L2 3091 3311 -2 330 26 0 0 chr3 33241714 33241753 -184795405 + (TG)n Simple_repeat Simple_repeat 2 40 0 831 277 138 43 chr3 33241991 33242456 -184794702 - MLT1H LTR MaLR -2 547 39 213 378 90 0 chr3 33242922 33243033 -184794125 - L2 LINE L2 -16 3256 3136 290 82 9 0 chr3 33243046 33243092 -184794066 + Alu SINE Alu 250 289 -11 425 76 15 0 chr3 33243106 33243172 -184793986 + (TA)n Simple_repeat Simple_repeat 2 68 0 245 333 95 9 chr3 33243173 33243278 -184793880 - L2 LINE L2 -186 3127 3014 551 189 39 18 chr3 33243295 33243581 -184793577 + (TA)n Simple_repeat Simple_repeat 1 292 0 235 94 0 0 chr3 33243582 33243614 -184793544 + (CA)n Simple_repeat Simple_repeat 2 33 0 947 156 47 47 chr3 33244302 33244513 -184792645 - MER20 DNA MER1_type -3 216 6 430 235 59 0 chr3 33246456 33246558 -184790600 - L3 LINE CR1 -910 667 560 334 325 43 0 chr3 33246585 33246702 -184790456 - L3 LINE CR1 -1129 448 327 1059 160 16 21 chr3 33247067 33247254 -184789904 + MER5A DNA MER1_type 4 189 0 419 265 125 45 chr3 33247345 33247545 -184789613 - MIR SINE MIR -2 260 45 2637 29 0 13 chr3 33247848 33248163 -184788995 - AluYa5 SINE Alu 0 311 1 579 255 153 0 chr3 33248262 33248419 -184788739 + MER5A DNA MER1_type 9 189 0 221 259 17 17 chr3 33248437 33248495 -184788663 - MIR SINE MIR -76 132 75 686 288 9 40 chr3 33248584 33248810 -184788348 - MIR SINE MIR -15 247 29 2253 105 16 3 chr3 33248953 33249258 -184787900 + AluSx SINE Alu 1 309 -3 306 0 0 0 chr3 33250242 33250276 -184786882 + (CA)n Simple_repeat Simple_repeat 1 34 0 182 365 21 10 chr3 33252276 33252372 -184784786 - MIR3 SINE MIR -7 201 105 662 264 119 57 chr3 33252448 33252902 -184784256 + MLT1J LTR MaLR 19 500 -11 244 267 0 0 chr3 33252915 33252975 -184784183 + L2 LINE L2 3240 3299 -14 300 325 58 34 chr3 33252979 33253185 -184783973 + L2 LINE L2 2448 2658 -656 575 299 0 0 chr3 33253424 33253558 -184783600 + L2 LINE L2 3180 3313 0 233 167 19 0 chr3 33253618 33253672 -184783486 + GA-rich Low_complexity Low_complexity 2 56 0 523 198 83 0 chr3 33253868 33253989 -184783169 + Charlie1 DNA MER1_type 2343 2473 -288 956 217 64 20 chr3 33253989 33254315 -184782843 + MSTD LTR MaLR 2 371 -25 845 152 15 131 chr3 33254324 33254653 -184782505 + Charlie1 DNA MER1_type 2471 2761 0 415 295 110 20 chr3 33254736 33254936 -184782222 + MIR SINE MIR 20 237 -25 425 234 45 0 chr3 33255036 33255147 -184782011 + MER63 DNA MER1_type 1 742 -94 731 200 41 0 chr3 33255565 33255710 -184781448 + MER5A DNA MER1_type 1 151 -38 723 239 93 11 chr3 33255846 33256208 -184780950 + LTR16A1 LTR ERVL 4 456 -1 459 364 31 5 chr3 33256208 33256403 -184780755 + MIR SINE MIR 27 226 -36 352 262 194 30 chr3 33256884 33257147 -184780011 + L2 LINE L2 2994 3299 -14 2039 236 43 7 chr3 33257151 33257735 -184779423 + L1ME3A LINE L1 5511 6115 -55 350 316 123 74 chr3 33257923 33258515 -184778643 - L1M2 LINE L1 -5456 1393 773 225 290 183 0 chr3 33259578 33259671 -184777487 + MIR3 SINE MIR 65 174 -34 661 274 107 31 chr3 33261797 33262114 -184775044 - MLT1J2 LTR MaLR -109 341 1 583 269 91 10 chr3 33262142 33262339 -184774819 - MIR SINE MIR -1 261 49 246 128 0 0 chr3 33263286 33263325 -184773833 + (TA)n Simple_repeat Simple_repeat 1 39 0 911 217 31 61 chr3 33264028 33264355 -184772803 + L1ME3A LINE L1 5854 6170 0 238 257 248 0 chr3 33265040 33265145 -184772013 - L2 LINE L2 -1 3271 3141 261 159 0 0 chr3 33265150 33265213 -184771945 + CT-rich Low_complexity Low_complexity 2 64 0 351 0 0 0 chr3 33265213 33265252 -184771906 + (CA)n Simple_repeat Simple_repeat 2 40 0 256 341 0 41 chr3 33265252 33265375 -184771783 - L2 LINE L2 -27 3286 3169 29 47 0 0 chr3 33265395 33265438 -184771720 + AT_rich Low_complexity Low_complexity 1 43 0 427 215 0 0 chr3 33265451 33265544 -184771614 - L1MEc LINE L1 -3896 2748 2656 1747 217 303 6 chr3 33265558 33266337 -184770821 - L1MC4 LINE L1 -206 7836 6827 1180 257 39 52 chr3 33266427 33267048 -184770110 - L1MEc LINE L1 -4577 2248 1485 662 313 80 9 chr3 33267144 33267483 -184769675 - L1MEc LINE L1 -5935 890 528 264 304 10 20 chr3 33267583 33267685 -184769473 - L2 LINE L2 -151 3162 3062 239 323 57 32 chr3 33267759 33267883 -184769275 - L2 LINE L2 -191 3081 2955 873 194 12 12 chr3 33267919 33268089 -184769069 - AluJb SINE Alu -23 289 120 255 321 45 27 chr3 33268229 33268341 -184768817 - L2 LINE L2 -486 2828 2715 1861 154 10 3 chr3 33268517 33268810 -184768348 + AluJb SINE Alu 2 296 -16 184 135 162 0 chr3 33269188 33269225 -184767933 - L2 LINE L2 -8 3264 3222 1718 145 83 26 chr3 33269633 33269984 -184767174 + THE1C LTR MaLR 3 373 -2 1077 242 56 49 chr3 33270042 33270451 -184766707 + LTR16A1 LTR ERVL 13 424 -33 304 270 81 9 chr3 33270731 33270842 -184766316 - L2 LINE L2 -971 2343 2225 258 287 68 31 chr3 33271036 33271329 -184765829 + L1MC/D LINE L1 4309 4612 -1534 2126 119 7 3 chr3 33271388 33271690 -184765468 + AluSg SINE Alu 1 303 -7 282 261 116 0 chr3 33272166 33272304 -184764854 + L1MC/D LINE L1 5313 5466 -2342 610 336 89 42 chr3 33272483 33273269 -184763889 - L1M4 LINE L1 -1086 5060 4238 720 256 19 0 chr3 33273797 33273957 -184763201 - FRAM SINE Alu -3 163 1 316 324 64 20 chr3 33274021 33274225 -184762933 - L1M4 LINE L1 -2368 3778 3566 252 0 0 0 chr3 33276554 33276582 -184760576 + (T)n Simple_repeat Simple_repeat 1 28 0 342 246 47 76 chr3 33277130 33277301 -184759857 - MIR SINE MIR -12 250 85 261 225 43 32 chr3 33277393 33277485 -184759673 + MLT1J1 LTR MaLR 71 141 -305 953 232 16 5 chr3 33277492 33277682 -184759476 - MER58A DNA MER1_type -9 215 24 1298 183 14 5 chr3 33277693 33277906 -184759252 + MER8 DNA MER2_type 4 218 -21 219 339 0 0 chr3 33278047 33278109 -184759049 + L2 LINE L2 2684 2745 -569 241 276 23 0 chr3 33279073 33279160 -184757998 - L1ME4a LINE L1 -68 6053 5965 302 330 20 0 chr3 33279363 33279463 -184757695 - MIR SINE MIR -142 120 19 682 250 119 6 chr3 33279488 33279648 -184757510 - MER5B DNA MER1_type 0 178 1 2658 121 18 20 chr3 33280015 33280460 -184756698 - MER65A LTR ERV1 0 445 2 24 32 0 0 chr3 33281024 33281055 -184756103 + AT_rich Low_complexity Low_complexity 1 31 0 1354 221 132 10 chr3 33281296 33281698 -184755460 + MLT1C LTR MaLR 17 467 0 25 51 0 0 chr3 33281988 33282027 -184755131 + AT_rich Low_complexity Low_complexity 1 39 0 654 275 11 19 chr3 33285315 33285519 -184751639 - MIR SINE MIR -32 230 31 435 199 44 44 chr3 33285578 33285759 -184751399 - HAL1 LINE L1 -1457 1050 870 411 266 98 14 chr3 33285762 33285905 -184751253 + MER5B DNA MER1_type 5 159 -19 252 207 0 69 chr3 33285914 33285972 -184751186 - HAL1 LINE L1 -1658 849 796 * 1941 231 95 58 chr3 33285969 33286781 -184750377 + L1M4 LINE L1 3513 4354 -1792 1684 299 81 16 chr3 33286768 33287456 -184749702 - HAL1 LINE L1 -1697 810 78 * 431 298 8 8 chr3 33287888 33288012 -184749146 - L2 LINE L2 -9 3304 3181 1664 163 59 17 chr3 33288692 33288981 -184748177 + AluJo SINE Alu 1 301 -11 4116 162 18 42 chr3 33289157 33290028 -184747130 - L1MB8 LINE L1 0 6178 5329 3066 230 11 15 chr3 33290029 33290842 -184746316 - L1MB8 LINE L1 -1071 5075 4266 652 269 28 0 chr3 33290865 33291047 -184746111 - L1ME4a LINE L1 -392 5770 5584 2327 92 0 3 chr3 33292978 33293283 -184743875 + AluSc SINE Alu 1 304 -5 917 255 33 0 chr3 33294019 33294231 -184742927 + MER20 DNA MER1_type 1 219 0 1580 159 85 0 chr3 33294593 33294744 -184742414 - AluSx SINE Alu -5 307 170 279 0 0 0 chr3 33294744 33294775 -184742383 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 1580 159 85 0 chr3 33294775 33294906 -184742252 - AluSx SINE Alu -142 170 1 627 60 24 0 chr3 33297708 33297832 -184739326 - AluSc SINE Alu 0 319 194 199 343 103 29 chr3 33297954 33298129 -184739029 + MIR SINE MIR 75 262 0 873 152 0 51 chr3 33298578 33298736 -184738422 + FRAM SINE Alu 13 162 -14 1256 250 114 45 chr3 33299190 33299663 -184737495 - MLT1H1 LTR MaLR -9 546 47 419 309 44 0 chr3 33300185 33300321 -184736837 + L2 LINE L2 2611 2752 -562 2824 219 16 19 chr3 33300343 33301027 -184736131 - L1MA9 LINE L1 -38 6274 5593 429 198 91 8 chr3 33301027 33301148 -184736010 + L1M2 LINE L1 4321 4451 -1695 1090 180 72 0 chr3 33301149 33301371 -184735787 - Tigger5 DNA MER2_type -1 2322 2085 388 186 0 0 chr3 33301392 33301451 -184735707 - Tigger5 DNA MER2_type -2261 62 4 4045 159 33 36 chr3 33301452 33302638 -184734520 + L1M2 LINE L1 4448 5632 -680 323 226 119 0 chr3 33302640 33302724 -184734434 + L2 LINE L2 2749 2842 -472 476 223 78 10 chr3 33302726 33302829 -184734329 - L2 LINE L2 0 3313 3204 1252 242 89 28 chr3 33302836 33303261 -184733897 + L2 LINE L2 2859 3309 -4 37555 80 10 19 chr3 33303307 33309465 -184727693 + L1PA6 LINE L1 55 6151 -3 2134 144 62 35 chr3 33310188 33310611 -184726547 + Tigger2a DNA MER2_type 1 434 0 1089 214 13 66 chr3 33310697 33310780 -184726378 + MER58B DNA MER1_type 39 125 -2295 2233 113 7 7 chr3 33310780 33311089 -184726069 - AluSx SINE Alu -3 309 1 1089 214 13 66 chr3 33311089 33311227 -184725931 + MER58B DNA MER1_type 125 241 -2179 2383 48 41 0 chr3 33311227 33311518 -184725640 + AluY SINE Alu 1 303 -8 1089 214 13 66 chr3 33311518 33311612 -184725546 + MER58B DNA MER1_type 241 338 -3 190 384 26 47 chr3 33311625 33311815 -184725343 + MER5A DNA MER1_type 4 189 0 22 0 0 0 chr3 33312495 33312517 -184724641 + AT_rich Low_complexity Low_complexity 1 22 0 2264 78 11 0 chr3 33312566 33312850 -184724308 - AluY SINE Alu -17 294 8 4546 169 15 36 chr3 33312899 33313290 -184723868 - L1MA7 LINE L1 -64 6227 5829 2250 128 0 0 chr3 33313290 33313602 -184723556 - AluSx SINE Alu 0 312 1 4546 169 15 36 chr3 33313602 33314130 -184723028 - L1MA7 LINE L1 -462 5829 5327 1155 219 27 19 chr3 33314126 33314492 -184722666 - L1MDb LINE L1 -3966 2440 2072 * 582 252 14 23 chr3 33314507 33314721 -184722437 - L1MDb LINE L1 -4385 2021 1810 * 6395 211 30 33 chr3 33314702 33316324 -184720834 - L1MDb LINE L1 -4799 1607 6 1967 218 15 17 chr3 33316375 33316843 -184720315 + MLT1C LTR MaLR 1 467 0 304 293 0 13 chr3 33317449 33317524 -184719634 + MIR3 SINE MIR 111 184 -24 1035 206 60 0 chr3 33317804 33318095 -184719063 - MER33 DNA MER1_type 0 363 1 1603 182 26 3 chr3 33318353 33318655 -184718503 - AluJb SINE Alu -3 309 1 248 339 68 70 chr3 33318780 33319235 -184717923 + L2 LINE L2 2305 2758 -556 370 171 137 0 chr3 33319300 33319393 -184717765 - MER5A DNA MER1_type -77 112 4 494 308 8 8 chr3 33320137 33320267 -184716891 - L2 LINE L2 -7 3265 3136 231 36 0 0 chr3 33320297 33320325 -184716833 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 1597 230 49 11 chr3 33321048 33321792 -184715366 + MER99 DNA DNA 2 828 0 338 185 19 19 chr3 33323835 33323943 -184713215 + GA-rich Low_complexity Low_complexity 1 108 0 532 279 64 68 chr3 33324453 33324864 -184712294 + LTR16C LTR ERVL 2 491 0 22 35 0 0 chr3 33326400 33326429 -184710729 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 33327330 33327352 -184709806 + AT_rich Low_complexity Low_complexity 1 22 0 591 169 203 6 chr3 33327833 33327986 -184709172 + MER5A DNA MER1_type 1 188 -1 297 346 126 18 chr3 33328527 33328868 -184708290 - L2 LINE L2 -446 2868 2491 354 342 142 0 chr3 33328874 33329064 -184708094 - L3 LINE CR1 -283 1294 1078 275 346 85 7 chr3 33329121 33329274 -184707884 - MIR SINE MIR -48 214 50 1484 48 0 53 chr3 33329978 33330185 -184706973 - L1PA5 LINE L1 -1 6153 5958 390 296 0 0 chr3 33330825 33330923 -184706235 - MER5A DNA MER1_type -83 106 9 262 300 24 123 chr3 33331610 33331780 -184705378 - L3 LINE CR1 -434 1143 991 385 341 45 31 chr3 33331813 33332103 -184705055 - L2 LINE L2 -831 2483 2190 21 36 0 0 chr3 33332728 33332756 -184704402 + AT_rich Low_complexity Low_complexity 1 28 0 808 358 70 39 chr3 33334096 33334820 -184702338 + L2 LINE L2 2511 3244 -28 276 170 0 0 chr3 33335277 33335330 -184701828 + CT-rich Low_complexity Low_complexity 1 53 0 2051 109 4 0 chr3 33336857 33337132 -184700026 + AluSx SINE Alu 1 276 -36 486 0 0 0 chr3 33337155 33337209 -184699949 + (TA)n Simple_repeat Simple_repeat 2 55 0 350 310 9 17 chr3 33337209 33337325 -184699833 - MER5B DNA MER1_type -61 117 3 916 233 46 120 chr3 33339508 33339924 -184697234 + MLT1C LTR MaLR 6 467 0 213 266 72 78 chr3 33340179 33340315 -184696843 + MIR3 SINE MIR 41 177 -31 891 185 60 15 chr3 33340763 33340963 -184696195 - MER3 DNA MER1_type 0 209 1 525 188 211 0 chr3 33340973 33341106 -184696052 - MER5A DNA MER1_type -21 168 8 2272 102 7 3 chr3 33341287 33341621 -184695537 + AluSq SINE Alu 1 335 0 1288 181 0 13 chr3 33341704 33341930 -184695228 - MER58A DNA MER1_type 0 224 2 199 344 58 39 chr3 33342251 33342405 -184694753 - MIR3 SINE MIR -18 190 34 21 36 0 0 chr3 33342708 33342736 -184694422 + AT_rich Low_complexity Low_complexity 1 28 0 325 258 89 61 chr3 33343057 33343221 -184693937 - MIR SINE MIR -56 152 19 232 257 95 0 chr3 33343890 33343964 -184693194 - L1MC/D LINE L1 -891 5442 5362 358 297 72 34 chr3 33344046 33344464 -184692694 - L1MC/D LINE L1 -915 5231 4798 583 258 24 57 chr3 33346144 33346353 -184690805 + LTR67 LTR ERVL 356 557 0 233 253 111 95 chr3 33346877 33347067 -184690091 - L1ME3A LINE L1 -15 6155 5963 1129 285 98 25 chr3 33347120 33347718 -184689440 - L1ME3A LINE L1 -206 5964 5341 22 94 0 0 chr3 33348106 33348170 -184688988 + AT_rich Low_complexity Low_complexity 1 64 0 428 301 44 40 chr3 33348788 33349014 -184688144 + L1ME4a LINE L1 5598 5824 -297 180 0 0 0 chr3 33349093 33349113 -184688045 + (A)n Simple_repeat Simple_repeat 1 20 0 1010 213 23 14 chr3 33349730 33349946 -184687212 - MER20 DNA MER1_type -1 218 1 300 266 0 0 chr3 33350259 33350338 -184686820 + L1ME4a LINE L1 6042 6120 -1 295 238 32 0 chr3 33351501 33351564 -184685594 + MER81 DNA DNA 29 93 -21 304 297 22 0 chr3 33352312 33352403 -184684755 + L2 LINE L2 2967 3059 -213 242 252 118 82 chr3 33352455 33352557 -184684601 + L2 LINE L2 3172 3282 -31 1441 241 84 53 chr3 33352557 33353081 -184684077 + MLT1F LTR MaLR 1 540 -2 242 252 118 82 chr3 33353081 33353113 -184684045 + L2 LINE L2 3282 3311 -2 1263 233 49 56 chr3 33353416 33353807 -184683351 - LTR16A LTR ERVL -8 442 55 23 33 0 0 chr3 33354059 33354089 -184683069 + AT_rich Low_complexity Low_complexity 1 30 0 1755 204 105 4 chr3 33355015 33355472 -184681686 + L1M4 LINE L1 4639 5141 -1005 1619 164 27 27 chr3 33455536 33455834 -184581324 + AluJb SINE Alu 1 298 -14 22 0 0 0 chr3 33455948 33455970 -184581188 + AT_rich Low_complexity Low_complexity 1 22 0 669 268 34 19 chr3 33456079 33456284 -184580874 + MIR SINE MIR 6 213 -49 225 0 0 0 chr3 33456857 33456882 -184580276 + (A)n Simple_repeat Simple_repeat 1 25 0 248 352 39 31 chr3 33456940 33457068 -184580090 - L2 LINE L2 -6 3307 3179 406 295 147 10 chr3 33459427 33459620 -184577538 + MIR SINE MIR 16 231 -31 567 224 160 0 chr3 33459758 33459914 -184577244 + MER5A DNA MER1_type 9 189 0 333 0 0 0 chr3 33460015 33460052 -184577106 + (CA)n Simple_repeat Simple_repeat 2 38 0 264 259 17 0 chr3 33460110 33460168 -184576990 + L2 LINE L2 3209 3267 -5 878 254 168 0 chr3 33461488 33461756 -184575402 - MLT1J1 LTR MaLR -133 313 1 193 125 31 0 chr3 33461961 33461993 -184575165 + MIR SINE MIR 163 195 -67 890 250 5 5 chr3 33462281 33462481 -184574677 + MIR SINE MIR 61 260 -2 370 271 181 7 chr3 33463110 33463254 -184573904 - MER5A DNA MER1_type -6 183 15 * 420 220 20 20 chr3 33463246 33463346 -184573812 + MER5A DNA MER1_type 90 189 0 230 304 0 25 chr3 33463717 33463796 -184573362 + MER81 DNA DNA 1 77 -37 471 271 199 0 chr3 33463827 33463978 -184573180 - MER5A DNA MER1_type 0 189 9 1797 161 7 3 chr3 33464190 33464475 -184572683 - AluJb SINE Alu -26 286 1 1396 140 133 36 chr3 33465135 33465443 -184571715 - MER44D DNA MER2_type -1 608 1 1532 176 107 3 chr3 33465532 33465851 -184571307 + MER82 DNA MER2_type 14 365 -288 521 246 0 29 chr3 33466020 33466041 -184571117 + MER58B DNA MER1_type 178 198 -2222 828 198 173 64 chr3 33466041 33466370 -184570788 - MLT1A1 LTR MaLR 0 365 1 521 246 0 29 chr3 33466370 33466486 -184570672 + MER58B DNA MER1_type 198 311 -30 412 189 3 9 chr3 33466478 33466567 -184570591 - MLT1I LTR MaLR -247 192 98 * 583 221 179 0 chr3 33466852 33466992 -184570166 - MER5A DNA MER1_type -21 168 4 1820 169 27 3 chr3 33467267 33467563 -184569595 + AluJb SINE Alu 1 303 -9 1870 190 38 5 chr3 33468491 33468913 -184568245 + L1MB7 LINE L1 5509 5944 -240 351 0 0 0 chr3 33469286 33469325 -184567833 + (GA)n Simple_repeat Simple_repeat 2 40 0 555 307 67 13 chr3 33470176 33470401 -184566757 - MIR SINE MIR -1 261 25 649 224 105 24 chr3 33472917 33473127 -184564031 + MIR SINE MIR 17 243 -19 1626 144 7 14 chr3 33473144 33473446 -184563712 - MER1B DNA MER1_type -1 328 1 956 242 33 0 chr3 33473455 33473666 -184563492 + MER20 DNA MER1_type 2 219 0 2511 74 0 0 chr3 33473703 33474012 -184563146 + AluY SINE Alu 1 309 -2 259 246 66 0 chr3 33474648 33474709 -184562449 + L2 LINE L2 3237 3301 -12 355 333 44 28 chr3 33475937 33476117 -184561041 + MIR SINE MIR 42 224 -38 1628 216 109 107 chr3 33476253 33477077 -184560081 + LTR1B LTR ERV1 1 826 0 297 0 0 0 chr3 33477643 33477676 -184559482 + (A)n Simple_repeat Simple_repeat 1 33 0 784 230 88 0 chr3 33477825 33478064 -184559094 - MER63 DNA MER1_type -5 1055 796 666 323 67 22 chr3 33478737 33479140 -184558018 + LTR16A LTR ERVL 16 436 -14 235 224 0 0 chr3 33479616 33479665 -184557493 - MIR SINE MIR -108 154 106 1013 233 134 37 chr3 33479729 33480162 -184556996 + LTR48 LTR ERV1 1 475 -312 809 187 124 42 chr3 33480163 33480404 -184556754 + LTR48B LTR ERV1 383 643 -1 1875 222 157 58 chr3 33480409 33481161 -184555997 + LTR1B LTR ERV1 1 826 0 197 420 59 0 chr3 33481324 33481443 -184555715 + MIR3 SINE MIR 31 156 -52 247 310 4 27 chr3 33481805 33481944 -184555214 + GA-rich Low_complexity Low_complexity 1 218 0 235 150 67 0 chr3 33482280 33482340 -184554818 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 201 158 0 0 chr3 33483018 33483056 -184554102 + A-rich Low_complexity Low_complexity 1 38 0 279 346 58 0 chr3 33483270 33483374 -184553784 - L2 LINE L2 0 3272 3163 716 189 15 15 chr3 33483705 33483837 -184553321 - FLAM_C SINE Alu 0 133 2 392 207 193 22 chr3 33484978 33485113 -184552045 - MER5A DNA MER1_type -31 158 1 1836 149 120 16 chr3 33486935 33487311 -184549847 - MSTB LTR MaLR -6 420 6 298 247 0 0 chr3 33487337 33487418 -184549740 - MER113 DNA MER1_type? -53 468 388 262 292 50 33 chr3 33488053 33488173 -184548985 - MIR SINE MIR -121 141 20 1524 203 22 7 chr3 33489069 33489345 -184547813 - AluJb SINE Alu -32 280 1 2358 86 3 0 chr3 33489647 33489948 -184547210 - AluY SINE Alu -9 302 1 397 305 94 42 chr3 33491332 33491561 -184545597 + MIR SINE MIR 10 259 -3 194 411 62 0 chr3 33491574 33491686 -184545472 - L2 LINE L2 -11 3261 3143 243 296 195 10 chr3 33493195 33493389 -184543769 - MIR SINE MIR -10 252 24 235 290 123 51 chr3 33493467 33493605 -184543553 + MIR3 SINE MIR 60 207 -1 196 274 24 83 chr3 33493664 33493748 -184543410 + L2 LINE L2 3185 3263 -9 * 502 307 13 7 chr3 33493745 33493895 -184543263 + MIR3 SINE MIR 30 180 -28 180 328 117 31 chr3 33494018 33494146 -184543012 + MIR3 SINE MIR 22 160 -48 2211 99 0 3 chr3 33494265 33494557 -184542601 + AluSg SINE Alu 3 293 -17 275 342 9 18 chr3 33495067 33495204 -184541954 - MIR SINE MIR -73 135 2 2173 159 45 37 chr3 33496454 33496514 -184540644 + L1MB4 LINE L1 5687 5745 -435 1653 148 0 4 chr3 33496514 33496764 -184540394 + AluSx SINE Alu 57 305 -7 2173 159 45 37 chr3 33496764 33497188 -184539970 + L1MB4 LINE L1 5745 6175 -5 21 0 0 0 chr3 33497255 33497276 -184539882 + AT_rich Low_complexity Low_complexity 1 21 0 306 221 0 0 chr3 33497483 33497551 -184539607 + MER116 DNA Mariner 13 80 0 320 269 67 72 chr3 33497822 33498015 -184539143 - Charlie8 DNA MER1_type -2225 192 1 205 154 77 0 chr3 33503362 33503401 -184533757 + MER91 DNA MER1_type 41 82 -108 186 200 0 0 chr3 33503901 33503941 -184533217 - L2 LINE L2 -6 3307 3268 335 176 54 14 chr3 33503941 33504015 -184533143 + MER91C DNA MER1_type 1 77 -63 206 311 189 9 chr3 33504193 33504299 -184532859 - L2 LINE L2 -240 3032 2908 22 35 0 0 chr3 33504489 33504518 -184532640 + AT_rich Low_complexity Low_complexity 1 29 0 869 274 73 17 chr3 33504591 33504709 -184532449 + MIR SINE MIR 6 116 -146 1326 255 0 13 chr3 33504709 33505015 -184532143 - AluJo SINE Alu -10 302 1 869 274 73 17 chr3 33505015 33505130 -184532028 + MIR SINE MIR 116 252 -10 253 278 133 11 chr3 33505150 33505240 -184531918 - L2 LINE L2 -16 3297 3197 247 253 53 53 chr3 33506094 33506189 -184530969 + L2 LINE L2 3178 3272 0 23 54 0 0 chr3 33506585 33506622 -184530536 + AT_rich Low_complexity Low_complexity 1 37 0 1484 198 3 45 chr3 33510068 33510381 -184526777 - AluJo SINE Alu -12 300 1 372 311 169 14 chr3 33510791 33511010 -184526148 - MIR SINE MIR -5 257 5 759 234 40 10 chr3 33511156 33511357 -184525801 - MER3 DNA MER1_type 0 209 3 359 264 85 0 chr3 33511423 33511529 -184525629 - MER105 DNA DNA -6 198 84 214 363 56 12 chr3 33511669 33511829 -184525329 + MIR3 SINE MIR 36 202 -6 212 189 0 0 chr3 33512219 33512256 -184524902 + A-rich Low_complexity Low_complexity 1 37 0 656 239 53 61 chr3 33513105 33513368 -184523790 + MIR SINE MIR 2 262 0 199 286 10 7 chr3 33513453 33513569 -184523589 - MIR SINE MIR -29 233 47 327 289 99 26 chr3 33515086 33515238 -184521920 + MIR3 SINE MIR 32 194 -14 2503 145 8 0 chr3 33516057 33516457 -184520701 - MER57A LTR ERV1 0 403 1 441 292 148 0 chr3 33516580 33516796 -184520362 - MIR SINE MIR -11 251 4 21 0 0 0 chr3 33516820 33516841 -184520317 + AT_rich Low_complexity Low_complexity 1 21 0 2089 103 17 27 chr3 33516841 33517141 -184520017 - AluSx SINE Alu -15 297 1 2704 213 121 34 chr3 33517167 33517915 -184519243 - L1MB7 LINE L1 -9 6175 5319 1961 121 14 0 chr3 33517915 33518195 -184518963 + AluSx SINE Alu 1 284 -28 2704 213 121 34 chr3 33518195 33518542 -184518616 - L1MB7 LINE L1 -865 5319 5004 22 0 0 0 chr3 33518628 33518650 -184518508 + AT_rich Low_complexity Low_complexity 1 22 0 866 262 100 16 chr3 33518718 33519125 -184518033 - L1ME3 LINE L1 -205 5957 5504 869 220 121 3 chr3 33520242 33520524 -184516634 + MER33 DNA MER1_type 6 320 -4 1591 184 75 0 chr3 33520925 33521245 -184515913 - MER2 DNA MER2_type 0 344 1 195 184 0 0 chr3 33522321 33522359 -184514799 + GA-rich Low_complexity Low_complexity 2 39 0 2466 64 0 13 chr3 33522459 33522770 -184514388 + AluY SINE Alu 1 307 -4 481 337 106 36 chr3 33522992 33523295 -184513863 - L3 LINE CR1 -7 1570 1247 609 305 44 0 chr3 33523298 33523501 -184513657 - MIR SINE MIR 0 262 51 862 153 0 0 chr3 33523948 33524072 -184513086 - FLAM_C SINE Alu -9 124 1 921 290 71 37 chr3 33524793 33525228 -184511930 + MLT1J2 LTR MaLR 1 450 0 191 190 155 35 chr3 33525581 33525639 -184511519 + MIR SINE MIR 8 72 -190 284 73 0 0 chr3 33526441 33526482 -184510676 + L2 LINE L2 3273 3313 0 660 251 56 11 chr3 33527990 33528169 -184508989 + MER5A DNA MER1_type 1 187 -2 311 261 14 0 chr3 33528244 33528313 -184508845 + L2 LINE L2 3243 3312 -1 2305 118 0 6 chr3 33528500 33528814 -184508344 - AluSx SINE Alu 0 312 1 330 271 10 10 chr3 33529785 33529881 -184507277 - MLT1L LTR MaLR -325 290 195 6110 52 33 1 chr3 33530229 33531049 -184506109 - L1PA7 LINE L1 -3 6151 5306 411 173 37 12 chr3 33531049 33531130 -184506028 + LTR16B LTR ERVL 382 464 0 492 249 90 55 chr3 33531763 33532108 -184505050 - Charlie2 DNA MER1_type -19 2843 2487 26 30 0 0 chr3 33532221 33532254 -184504904 + AT_rich Low_complexity Low_complexity 1 33 0 1033 251 86 19 chr3 33532307 33532669 -184504489 - Charlie2a DNA MER1_type -1013 1849 1464 359 258 75 13 chr3 33532724 33532883 -184504275 - Charlie2a DNA MER1_type -2300 562 394 356 338 127 0 chr3 33533164 33533306 -184503852 + MIR SINE MIR 46 205 -57 239 167 50 0 chr3 33533329 33533389 -184503769 + (TA)n Simple_repeat Simple_repeat 2 64 0 548 114 0 0 chr3 33533396 33533475 -184503683 + MADE1 DNA Mariner 1 79 -1 215 115 154 19 chr3 33533489 33533541 -184503617 + MIR SINE MIR 196 254 -8 681 211 0 0 chr3 33533836 33533964 -184503194 + FLAM_A SINE Alu 2 129 -4 21 0 0 0 chr3 33535334 33535355 -184501803 + AT_rich Low_complexity Low_complexity 1 21 0 523 265 114 12 chr3 33536029 33536097 -184501061 - MER5A DNA MER1_type -2 187 127 885 221 17 0 chr3 33536097 33536269 -184500889 + MER45A DNA AcHobo 2 176 -2 523 265 114 12 chr3 33536269 33536366 -184500792 - MER5A DNA MER1_type -62 127 5 315 276 95 82 chr3 33536379 33536622 -184500536 + MLT1J LTR MaLR 110 355 -156 42 57 0 0 chr3 33536997 33537067 -184500091 + AT_rich Low_complexity Low_complexity 1 70 0 277 257 79 21 chr3 33537452 33537592 -184499566 - MER103 DNA DNA -1 165 18 3057 183 48 42 chr3 33538672 33538816 -184498342 - L1MB4 LINE L1 0 6180 6038 2227 98 0 0 chr3 33538816 33539113 -184498045 + AluY SINE Alu 1 297 -14 3057 183 48 42 chr3 33539113 33539690 -184497468 - L1MB4 LINE L1 -142 6038 5454 314 104 0 0 chr3 33539711 33539759 -184497399 + Alu SINE Alu 250 297 -4 294 309 27 9 chr3 33539906 33540016 -184497142 - MER5A DNA MER1_type -42 147 36 * 630 233 8 0 chr3 33539918 33540038 -184497120 + MER5A DNA MER1_type 68 188 -1 244 298 42 10 chr3 33540120 33540216 -184496942 + MIR SINE MIR 54 151 -67 221 343 67 9 chr3 33540541 33540646 -184496512 + L2 LINE L2 3203 3313 0 2940 156 26 11 chr3 33540731 33541264 -184495894 + L1PA16 LINE L1 5625 6165 -1 1670 182 14 24 chr3 33541550 33541847 -184495311 + AluJo SINE Alu 1 294 -18 21 36 0 0 chr3 33543783 33543811 -184493347 + AT_rich Low_complexity Low_complexity 1 28 0 523 288 42 67 chr3 33543837 33544077 -184493081 - MIR SINE MIR -10 252 19 358 268 99 49 chr3 33544423 33544565 -184492593 - MIR SINE MIR -112 150 2 554 256 0 0 chr3 33544791 33544908 -184492250 - FLAM_C SINE Alu -26 117 1 306 0 0 0 chr3 33545665 33545699 -184491459 + (CA)n Simple_repeat Simple_repeat 2 35 0 366 21 0 0 chr3 33546911 33546959 -184490199 + L1PA6 LINE L1 6107 6154 0 266 267 89 11 chr3 33546981 33547135 -184490023 + MIR SINE MIR 43 261 -1 1631 187 32 0 chr3 33548644 33548927 -184488231 + AluJb SINE Alu 6 297 -15 358 342 30 35 chr3 33549920 33550151 -184487007 - L3 LINE CR1 -3 1574 1345 351 0 0 0 chr3 33551979 33552018 -184485140 + (CA)n Simple_repeat Simple_repeat 2 40 0 391 247 234 53 chr3 33552248 33552552 -184484606 - MLT1L LTR MaLR -94 521 163 1103 207 153 7 chr3 33552828 33553128 -184484030 + MER2 DNA MER2_type 1 344 0 464 270 146 24 chr3 33553151 33553644 -184483514 - HAL1 LINE L1 -129 2378 1826 687 292 155 22 chr3 33553676 33553998 -184483160 - HAL1 LINE L1 -937 1570 1206 449 209 191 36 chr3 33554010 33554065 -184483093 - Charlie1 DNA MER1_type 0 2761 2716 1801 139 63 41 chr3 33554065 33554432 -184482726 - THE1C LTR MaLR 0 375 1 449 209 191 36 chr3 33554432 33554601 -184482557 - Charlie1 DNA MER1_type -45 2716 2502 254 189 0 0 chr3 33554963 33555016 -184482142 - HAL1 LINE L1 -1487 1020 968 294 286 128 95 chr3 33555485 33555721 -184481437 + L1MEd LINE L1 322 549 -5570 652 189 8 8 chr3 33555721 33555848 -184481310 - FLAM_C SINE Alu -5 128 2 294 286 128 95 chr3 33555848 33555932 -184481226 + L1MEd LINE L1 549 629 -5490 2582 51 0 6 chr3 33555932 33556243 -184480915 - AluY SINE Alu -2 309 1 294 286 128 95 chr3 33556243 33556460 -184480698 + L1MEd LINE L1 629 878 -5241 22 56 0 0 chr3 33556469 33556505 -184480653 + AT_rich Low_complexity Low_complexity 1 36 0 398 250 53 15 chr3 33556508 33556640 -184480518 + HAL1 LINE L1 618 754 -1753 981 170 47 52 chr3 33556641 33556853 -184480305 + MER20 DNA MER1_type 2 212 -7 606 249 51 32 chr3 33556859 33557076 -184480082 + HAL1 LINE L1 747 967 -1540 310 224 158 29 chr3 33557069 33557315 -184479843 + L1MEd LINE L1 2187 2464 -3665 * 303 349 34 23 chr3 33557645 33557820 -184479338 - HAL1 LINE L1 -1838 669 493 309 275 28 9 chr3 33557895 33558004 -184479154 - HAL1 LINE L1 -2134 373 263 2759 216 38 55 chr3 33558973 33559766 -184477392 + L1MC4a LINE L1 7007 7785 -23 550 293 35 6 chr3 33559813 33559987 -184477171 - MIR SINE MIR 0 262 84 21 36 0 0 chr3 33560580 33560608 -184476550 + AT_rich Low_complexity Low_complexity 1 28 0 305 319 84 31 chr3 33560708 33560934 -184476224 + L1ME LINE L1 2233 2470 -3659 244 135 0 0 chr3 33561130 33561167 -184475991 + L1ME LINE L1 2711 2747 -3382 1508 164 141 10 chr3 33561207 33561511 -184475647 + MER2 DNA MER2_type 2 345 0 406 262 137 64 chr3 33561530 33561938 -184475220 + L1ME LINE L1 2824 3261 -2868 255 226 0 0 chr3 33562011 33562073 -184475085 + L1ME LINE L1 3409 3470 -2659 705 270 56 25 chr3 33562249 33562445 -184474713 + MER58A DNA MER1_type 23 224 0 2371 284 88 42 chr3 33562506 33562580 -184474578 - L2 LINE L2 -203 3110 3041 2293 166 31 5 chr3 33562580 33562997 -184474161 + MSTB1 LTR MaLR 1 428 -4 2371 284 88 42 chr3 33562997 33564074 -184473084 - L2 LINE L2 -272 3041 1903 250 266 139 25 chr3 33564134 33564292 -184472866 + L1ME LINE L1 3932 4107 -2022 1511 197 95 0 chr3 33564315 33564640 -184472518 + L1MA3 LINE L1 5939 6294 -11 552 277 196 8 chr3 33564831 33565330 -184471828 + L1ME LINE L1 4690 5282 -847 227 306 76 7 chr3 33565375 33565519 -184471639 + L1ME LINE L1 5364 5517 -628 287 287 63 14 chr3 33565632 33565775 -184471383 + L1ME LINE L1 5671 5820 -284 2888 126 52 40 chr3 33566316 33566926 -184470232 - MER4B LTR ERV1 0 779 1 3756 146 42 29 chr3 33567968 33568686 -184468472 + LTR8A LTR ERV1 1 727 0 595 268 106 0 chr3 33569824 33570003 -184467155 + MIR SINE MIR 21 218 -44 465 269 36 8 chr3 33570012 33570194 -184466964 - MER8 DNA MER2_type 0 239 6 447 269 223 0 chr3 33570440 33570570 -184466588 + MER5A DNA MER1_type 7 165 -24 312 194 16 0 chr3 33570582 33570644 -184466514 - MER58B DNA MER1_type -4 337 275 579 137 21 11 chr3 33572649 33572744 -184464414 - Tigger7 DNA MER2_type -1 2486 2391 1041 243 49 4 chr3 33572751 33572998 -184464160 - Tigger7 DNA MER2_type -292 258 1 1636 215 87 38 chr3 33573482 33573979 -184463179 + Charlie1b DNA MER1_type 1 521 -2 1390 211 65 0 chr3 33574011 33574319 -184462839 + MER2 DNA MER2_type 1 328 -17 655 177 211 0 chr3 33574347 33574494 -184462664 - Tigger3(Golem) DNA MER2_type -1 3028 2851 192 171 29 0 chr3 33574566 33574601 -184462557 + MIR SINE MIR 85 120 -142 1205 204 104 26 chr3 33575368 33575676 -184461482 + MER58B DNA MER1_type 5 336 -5 2114 106 0 0 chr3 33576324 33576599 -184460559 - AluSx SINE Alu 0 312 38 1341 193 57 15 chr3 33577462 33577615 -184459543 - AluJo SINE Alu -30 282 112 185 0 40 0 chr3 33577615 33577640 -184459518 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1341 193 57 15 chr3 33577640 33577751 -184459407 - AluJo SINE Alu -200 112 7 739 164 0 97 chr3 33577790 33577997 -184459161 + MER53 DNA DNA 3 189 0 184 268 134 71 chr3 33579276 33579341 -184457817 - MER5A DNA MER1_type -4 185 109 2438 59 3 13 chr3 33579341 33579646 -184457512 + AluY SINE Alu 1 302 -9 184 268 134 71 chr3 33579646 33579692 -184457466 - MER5A DNA MER1_type -80 109 67 482 319 84 33 chr3 33579981 33580254 -184456904 + L2 LINE L2 2822 3108 -205 230 297 70 31 chr3 33580399 33580527 -184456631 + MER5B DNA MER1_type 3 135 -43 812 206 19 7 chr3 33580542 33580697 -184456461 + MER20 DNA MER1_type 1 157 -62 582 302 16 21 chr3 33580730 33580919 -184456239 - MER5A DNA MER1_type -1 188 1 21 0 0 0 chr3 33582049 33582070 -184455088 + AT_rich Low_complexity Low_complexity 1 21 0 2255 102 0 10 chr3 33582053 33582358 -184454800 - AluY SINE Alu -9 302 1 789 161 98 54 chr3 33582377 33582601 -184454557 - L1MB8 LINE L1 -9 6169 5936 234 258 125 119 chr3 33582966 33583303 -184453855 + Charlie8 DNA MER1_type 1 1426 -991 1961 209 118 27 chr3 33583623 33584150 -184453008 + MLT1E2 LTR MaLR 52 626 0 463 286 93 16 chr3 33584923 33585105 -184452053 + L2 LINE L2 3118 3313 0 771 249 88 9 chr3 33585354 33585571 -184451587 - L2 LINE L2 -471 2843 2610 360 302 138 16 chr3 33586351 33586540 -184450618 + MIR SINE MIR 50 261 -1 362 349 7 7 chr3 33586969 33587118 -184450040 + GA-rich Low_complexity Low_complexity 3 151 0 730 297 76 96 chr3 33588271 33589103 -184448055 - L2 LINE L2 -834 2480 1666 550 330 12 6 chr3 33589090 33589263 -184447895 - MIR SINE MIR -61 201 28 * 207 0 0 0 chr3 33589353 33589376 -184447782 + (TA)n Simple_repeat Simple_repeat 2 24 0 299 303 40 30 chr3 33589399 33589498 -184447660 + L2 LINE L2 3173 3272 0 22 0 0 0 chr3 33591120 33591142 -184446016 + AT_rich Low_complexity Low_complexity 1 22 0 183 42 0 0 chr3 33591316 33591340 -184445818 + (CA)n Simple_repeat Simple_repeat 2 25 0 201 74 0 0 chr3 33591557 33591584 -184445574 + (CA)n Simple_repeat Simple_repeat 1 27 0 356 254 176 59 chr3 33592629 33592936 -184444222 + L1M2 LINE L1 932 1274 -5575 837 244 6 0 chr3 33592998 33593178 -184443980 + MER5A DNA MER1_type 9 189 0 1091 173 129 37 chr3 33593851 33594184 -184442974 - MER47B DNA MER2_type 0 418 1 240 173 39 19 chr3 33594680 33594784 -184442374 + GA-rich Low_complexity Low_complexity 3 108 0 465 262 48 79 chr3 33594909 33595161 -184441997 - LTR16A1 LTR ERVL -2 455 212 2293 107 3 0 chr3 33598819 33599117 -184438041 + AluSp SINE Alu 1 299 -14 2222 180 5 9 chr3 33599139 33599562 -184437596 + L1MC3 LINE L1 6385 6805 -980 1503 183 7 48 chr3 33599673 33599963 -184437195 + AluJo SINE Alu 21 298 -14 420 325 41 0 chr3 33600840 33601009 -184436149 + MLT1L LTR MaLR 432 607 -8 324 291 148 22 chr3 33601088 33601270 -184435888 - L1ME3A LINE L1 -5 6165 5961 1116 285 44 25 chr3 33601327 33601878 -184435280 - L1ME3A LINE L1 -208 5962 5402 244 341 7 7 chr3 33603019 33603154 -184434004 + L1MEc LINE L1 81 215 -6181 700 23 0 0 chr3 33703462 33703549 -184333609 + L1PA4 LINE L1 6066 6152 -3 5567 137 27 21 chr3 33703550 33705553 -184331605 - L1MA3 LINE L1 -150 6155 4143 6923 66 5 0 chr3 33705553 33706931 -184330227 + L1PA5 LINE L1 4768 6151 -3 283 128 12 47 chr3 33708459 33708545 -184328613 + (TA)n Simple_repeat Simple_repeat 1 83 0 2018 194 70 19 chr3 33708550 33709035 -184328123 - L1MA9 LINE L1 -95 6217 5708 24 0 0 0 chr3 33709624 33709648 -184327510 + AT_rich Low_complexity Low_complexity 1 24 0 419 273 39 23 chr3 33710014 33710142 -184327016 + L2 LINE L2 3171 3300 -13 407 252 75 25 chr3 33710279 33710438 -184326720 - MER20B DNA MER1_type -616 167 1 1916 163 7 0 chr3 33712419 33712719 -184324439 - AluSx SINE Alu -5 307 6 459 238 10 20 chr3 33713999 33714100 -184323058 - L2 LINE L2 0 3272 3173 241 324 78 34 chr3 33714357 33714653 -184322505 - L1ME LINE L1 -347 5774 5466 1043 227 46 44 chr3 33715154 33715387 -184321771 + MER39 LTR ERV1 181 412 -295 603 0 0 0 chr3 33715387 33715454 -184321704 + (CA)n Simple_repeat Simple_repeat 2 68 0 1043 227 46 44 chr3 33715454 33715613 -184321545 + MER39 LTR ERV1 412 696 -11 619 291 136 25 chr3 33715694 33716210 -184320948 - L1ME3A LINE L1 -299 5871 5299 780 254 0 5 chr3 33717419 33717604 -184319554 - FRAM SINE Alu 0 176 1 338 233 140 46 chr3 33717614 33717789 -184319369 - MIR SINE MIR -41 221 24 1533 178 259 0 chr3 33719242 33719613 -184317545 - MLT1C LTR MaLR 0 467 1 258 116 0 0 chr3 33720115 33720158 -184317000 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 2356 265 50 26 chr3 33720162 33720890 -184316268 - MER20B DNA MER1_type -4 779 35 228 228 0 0 chr3 33721542 33721599 -184315559 + CT-rich Low_complexity Low_complexity 4 60 0 413 81 65 0 chr3 33722407 33722469 -184314689 + MADE1 DNA Mariner 1 66 -14 261 368 88 0 chr3 33723786 33723900 -184313258 + MIR SINE MIR 20 143 -119 191 355 16 0 chr3 33724336 33724398 -184312760 - MIR3 SINE MIR -4 204 142 273 221 26 13 chr3 33725507 33725584 -184311574 + MER116 DNA Mariner 3 80 0 2047 149 0 0 chr3 33725735 33726117 -184311041 + AluSc SINE Alu 3 384 0 22 0 0 0 chr3 33726119 33726141 -184311017 + AT_rich Low_complexity Low_complexity 1 22 0 612 324 43 8 chr3 33728489 33728742 -184308416 + L2 LINE L2 3051 3312 -1 219 344 0 0 chr3 33728961 33729025 -184308133 + (TCCA)n Simple_repeat Simple_repeat 3 66 0 237 284 49 49 chr3 33729033 33729114 -184308044 - L2 LINE L2 -32 3281 3201 636 268 164 0 chr3 33729407 33729620 -184307538 + MIR SINE MIR 2 249 -13 250 269 99 50 chr3 33729970 33730120 -184307038 - MIR SINE MIR -64 144 10 1420 260 72 52 chr3 33730800 33731353 -184305805 - MLT1E LTR MaLR -29 564 1 199 303 66 33 chr3 33732055 33732177 -184304981 + MIR SINE MIR 21 146 -116 246 86 0 0 chr3 33732316 33732351 -184304807 + MLT2F LTR ERVL 107 141 -522 1245 309 56 12 chr3 33732558 33733037 -184304121 - L2 LINE L2 -4 3309 2810 204 279 73 0 chr3 33733205 33733273 -184303885 + L2 LINE L2 3186 3258 -14 1452 202 45 64 chr3 33734746 33735244 -184301914 + MER39 LTR ERV1 1 707 0 183 463 8 8 chr3 33735802 33735925 -184301233 - L2 LINE L2 -23 3249 3127 185 308 0 0 chr3 33736889 33736941 -184300217 - MIR SINE MIR -50 212 161 817 267 155 18 chr3 33737023 33737416 -184299742 + L1ME3A LINE L1 5674 6120 -50 224 261 29 0 chr3 33738166 33738235 -184298923 + (TTCA)n Simple_repeat Simple_repeat 2 72 0 229 241 63 25 chr3 33738390 33738469 -184298689 - L3 LINE CR1 -1213 364 283 576 147 20 0 chr3 33738753 33738855 -184298303 - L1MA6 LINE L1 0 6300 6197 930 102 30 18 chr3 33738861 33739028 -184298130 + L1M2 LINE L1 5321 5489 -811 543 269 7 14 chr3 33739028 33739173 -184297985 - MIR SINE MIR -22 240 97 1649 56 5 0 chr3 33739260 33739474 -184297684 - L1PA5 LINE L1 0 6154 5940 242 387 42 8 chr3 33739476 33739595 -184297563 - L2 LINE L2 -12 3260 3138 2091 128 3 0 chr3 33739721 33740017 -184297141 - AluJb SINE Alu -15 297 1 464 274 67 104 chr3 33740253 33740610 -184296548 + MLT1H LTR MaLR 40 383 -26 190 143 29 0 chr3 33740708 33740743 -184296415 + L2 LINE L2 3039 3074 -239 1146 226 45 3 chr3 33740850 33741142 -184296016 + MER33 DNA MER1_type 21 324 0 357 320 31 16 chr3 33742295 33742423 -184294735 - MIR SINE MIR -56 152 23 630 204 140 6 chr3 33742509 33742666 -184294492 + MER5B DNA MER1_type 1 178 0 796 211 29 34 chr3 33743026 33743234 -184293924 + MER3 DNA MER1_type 2 208 -1 322 315 29 53 chr3 33744227 33744295 -184292863 + MIR SINE MIR 20 88 -174 465 64 0 170 chr3 33744295 33744389 -184292769 + MADE1 DNA Mariner 1 78 -2 322 315 29 53 chr3 33744389 33744512 -184292646 + MIR SINE MIR 88 203 -59 365 66 49 0 chr3 33744692 33744753 -184292405 - L1MB4 LINE L1 0 6180 6117 2881 168 66 15 chr3 33744755 33745362 -184291796 - L1MB4 LINE L1 -226 5957 5320 915 267 4 28 chr3 33745560 33745807 -184291351 - MIR SINE MIR -5 257 17 796 299 94 39 chr3 33746186 33746620 -184290538 - L2 LINE L2 0 3313 2856 1169 229 38 32 chr3 33748224 33748595 -184288563 - MLT1A2 LTR MaLR 0 374 2 24 53 0 0 chr3 33748689 33748727 -184288431 + AT_rich Low_complexity Low_complexity 1 38 0 1625 208 45 51 chr3 33748976 33749424 -184287734 + MLT1D LTR MaLR 1 445 -60 1809 149 4 0 chr3 33749435 33749710 -184287448 + AluJb SINE Alu 11 286 -26 1007 179 45 2 chr3 33750022 33750317 -184286841 - MLT1A1 LTR MaLR -2 363 1 27 62 0 0 chr3 33750532 33750580 -184286578 + AT_rich Low_complexity Low_complexity 1 48 0 545 279 13 13 chr3 33751807 33751961 -184285197 + MIR SINE MIR 75 228 -34 23 33 0 0 chr3 33751977 33752007 -184285151 + AT_rich Low_complexity Low_complexity 1 30 0 1495 218 70 33 chr3 33752354 33752843 -184284315 + MLT1D LTR MaLR 1 626 0 561 326 98 68 chr3 33753039 33753982 -184283176 - L2 LINE L2 -452 2862 1892 725 266 142 4 chr3 33754062 33754288 -184282870 - MIR SINE MIR -5 257 1 269 281 52 52 chr3 33754288 33754427 -184282731 - MIR SINE MIR -62 200 62 986 231 79 119 chr3 33755512 33756009 -184281149 - MLT1J1 LTR MaLR 0 446 1 1289 209 122 40 chr3 33756197 33756599 -184280559 + MSTB2 LTR MaLR 23 457 0 255 323 60 23 chr3 33756853 33756986 -184280172 + MARNA DNA Mariner 75 212 -374 279 373 9 0 chr3 33756986 33757096 -184280062 - L3 LINE CR1 -8 1569 1459 842 327 144 20 chr3 33757597 33758202 -184278956 - L3 LINE CR1 -148 1429 750 21 0 0 0 chr3 33759295 33759316 -184277842 + AT_rich Low_complexity Low_complexity 1 21 0 5257 193 26 8 chr3 33762417 33764065 -184273093 + L1MB7 LINE L1 4229 5908 -270 * 14683 188 40 12 chr3 33764063 33767407 -184269751 + L1MA4A LINE L1 10 3444 -3404 30044 125 11 58 chr3 33767419 33773877 -184263281 + L1PA7 LINE L1 12 6151 -3 365 280 91 0 chr3 33773875 33774018 -184263140 + L1MA4A LINE L1 3435 3590 -3258 * 10188 157 23 25 chr3 33774020 33776211 -184260947 + L1MA4A LINE L1 4007 6185 -820 2097 117 7 0 chr3 33776211 33776494 -184260664 - AluSg SINE Alu -25 285 1 10188 157 23 25 chr3 33776494 33777312 -184259846 + L1MA4A LINE L1 6185 7003 -2 1010 145 77 133 chr3 33777309 33777373 -184259785 + L1MB7 LINE L1 5879 5945 -239 * 281 25 25 0 chr3 33777373 33777413 -184259745 - MADE1 DNA Mariner -3 77 37 1010 145 77 133 chr3 33777413 33777633 -184259525 + L1MB7 LINE L1 5945 6184 0 21 0 0 0 chr3 33778286 33778307 -184258851 + AT_rich Low_complexity Low_complexity 1 21 0 212 250 191 0 chr3 33778938 33779006 -184258152 + L2 LINE L2 3229 3309 -4 373 315 80 63 chr3 33779879 33780165 -184256993 + L1ME LINE L1 4 294 -5776 5131 229 100 54 chr3 33780635 33781850 -184255308 + L1ME LINE L1 3031 4188 -1912 2139 144 11 40 chr3 33781850 33781936 -184255222 - MER47A DNA MER2_type -1957 366 279 1877 159 51 0 chr3 33781936 33782231 -184254927 + AluSg SINE Alu 1 310 0 2139 144 11 40 chr3 33782231 33782520 -184254638 - MER47A DNA MER2_type -2044 279 2 5131 229 100 54 chr3 33782520 33783650 -184253508 + L1ME LINE L1 4188 5473 -627 492 157 207 71 chr3 33784277 33784417 -184252741 - MER3 DNA MER1_type -1 208 50 282 337 0 0 chr3 33784541 33784627 -184252531 + MIR SINE MIR 176 261 -1 180 0 0 0 chr3 33786957 33786977 -184250181 + (A)n Simple_repeat Simple_repeat 1 20 0 827 263 95 48 chr3 33787088 33787655 -184249503 + HAL1b LINE L1 311 904 -444 234 0 0 0 chr3 33789863 33789889 -184247269 + (T)n Simple_repeat Simple_repeat 1 26 0 180 0 0 0 chr3 33789913 33789933 -184247225 + (A)n Simple_repeat Simple_repeat 1 20 0 770 170 43 48 chr3 33790842 33791030 -184246128 + MER5A DNA MER1_type 1 187 -2 1036 211 9 52 chr3 33791042 33791274 -184245884 - MER58A DNA MER1_type -2 222 1 2076 159 0 6 chr3 33791353 33791667 -184245491 - AluJo SINE Alu 0 312 1 1684 299 115 48 chr3 33791677 33792851 -184244307 - HAL1 LINE L1 -221 2286 1192 2128 135 0 16 chr3 33792851 33793163 -184243995 + AluSx SINE Alu 5 311 -1 1684 299 115 48 chr3 33793163 33794130 -184243028 - HAL1 LINE L1 -1315 1192 2 24 32 0 0 chr3 33796709 33796740 -184240418 + AT_rich Low_complexity Low_complexity 1 31 0 306 0 0 0 chr3 33797834 33797868 -184239290 + (TA)n Simple_repeat Simple_repeat 2 35 0 1757 169 11 4 chr3 33797868 33798146 -184239012 - AluJb SINE Alu -27 285 6 3418 171 20 5 chr3 33798300 33798953 -184238205 + L1MB7 LINE L1 5505 6167 -17 1685 184 7 26 chr3 33798965 33799274 -184237884 + AluJo SINE Alu 1 303 -9 1909 187 68 35 chr3 33799909 33800026 -184237132 + MLT1D LTR MaLR 3 115 -390 1981 122 14 0 chr3 33800026 33800155 -184237003 + AluSx SINE Alu 1 127 -179 324 0 0 0 chr3 33800155 33800191 -184236967 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1981 122 14 0 chr3 33800191 33800363 -184236795 + AluSx SINE Alu 127 306 0 1909 187 68 35 chr3 33800363 33800731 -184236427 + MLT1D LTR MaLR 115 505 0 2272 87 3 50 chr3 33801894 33802217 -184234941 + AluSp SINE Alu 1 308 -5 1168 313 34 2 chr3 33802263 33802675 -184234483 + MLT1J2 LTR MaLR 1 425 -25 301 290 21 0 chr3 33803577 33803670 -184233488 + MIR SINE MIR 110 204 -58 1007 128 7 0 chr3 33803675 33803816 -184233342 + AluSq/x SINE Alu 1 142 -171 228 35 0 0 chr3 33803916 33803945 -184233213 + (CA)n Simple_repeat Simple_repeat 1 29 0 261 0 0 0 chr3 33804737 33804766 -184232392 + (T)n Simple_repeat Simple_repeat 1 29 0 281 298 25 83 chr3 33806290 33806411 -184230747 - L2 LINE L2 -25 3247 3134 556 345 114 30 chr3 33806562 33807086 -184230072 - L2 LINE L2 -452 2862 2295 269 78 98 0 chr3 33807458 33807509 -184229649 + L1MA1 LINE L1 5893 5948 -354 293 167 0 0 chr3 33807510 33807558 -184229600 + Alu SINE Alu 1 48 -255 231 114 0 0 chr3 33808110 33808145 -184229013 + (CA)n Simple_repeat Simple_repeat 1 35 0 231 289 24 0 chr3 33808629 33808712 -184228446 + (TATATG)n Simple_repeat Simple_repeat 2 86 0 2250 115 3 0 chr3 33811065 33811361 -184225797 - AluSx SINE Alu -15 297 1 375 291 103 12 chr3 33812472 33812637 -184224521 - MIR SINE MIR -10 252 73 370 305 75 25 chr3 33813155 33813355 -184223803 - MLT1L LTR MaLR -5 610 401 237 250 0 0 chr3 33813453 33813523 -184223635 - MLT1L LTR MaLR -333 178 115 1827 155 11 0 chr3 33814450 33814727 -184222431 + AluJb SINE Alu 6 285 -27 283 281 182 8 chr3 33815193 33815314 -184221844 + MIR3 SINE MIR 67 208 0 381 322 17 0 chr3 33815718 33815833 -184221325 - L2 LINE L2 0 3272 3156 950 236 161 6 chr3 33816004 33816326 -184220832 + L1ME1 LINE L1 5790 6161 -5 249 255 0 122 chr3 33818491 33818533 -184218625 - MIR SINE MIR -105 103 78 1771 148 57 44 chr3 33818533 33818899 -184218259 - THE1C LTR MaLR 0 375 5 249 255 0 122 chr3 33818899 33818954 -184218204 - MIR SINE MIR -130 78 18 23 33 0 0 chr3 33820159 33820189 -184216969 + AT_rich Low_complexity Low_complexity 1 30 0 289 172 0 52 chr3 33820246 33820304 -184216854 + L2 LINE L2 3259 3313 0 391 254 170 38 chr3 33820455 33820624 -184216534 + MIR3 SINE MIR 5 186 -52 593 323 20 31 chr3 33821553 33821807 -184215351 - MIR SINE MIR -10 252 2 1116 244 101 24 chr3 33822024 33822557 -184214601 + L1MC5 LINE L1 6955 7528 -433 182 88 0 29 chr3 33822582 33822616 -184214542 + (TA)n Simple_repeat Simple_repeat 2 34 0 2646 86 5 21 chr3 33822626 33822999 -184214159 - L1PA8A LINE L1 -9 6122 5756 349 261 170 20 chr3 33824101 33824254 -184212904 + MER5B DNA MER1_type 3 178 0 215 326 177 17 chr3 33824454 33824635 -184212523 + MIR SINE MIR 34 243 -19 23 0 0 0 chr3 33824871 33824894 -184212264 + AT_rich Low_complexity Low_complexity 1 23 0 1640 269 56 5 chr3 33825698 33826274 -184210884 + L1ME3A LINE L1 5566 6170 0 2225 112 3 0 chr3 33826716 33827010 -184210148 - AluSg SINE Alu -15 295 1 739 245 80 24 chr3 33827495 33827707 -184209451 + MER58A DNA MER1_type 1 224 0 676 239 96 10 chr3 33828224 33828421 -184208737 - MIR SINE MIR 0 262 49 618 251 54 67 chr3 33828473 33828513 -184208645 - MER58A DNA MER1_type -2196 224 185 2055 153 3 0 chr3 33828513 33828821 -184208337 + AluSx SINE Alu 1 309 -3 618 251 54 67 chr3 33828821 33829003 -184208155 - MER58A DNA MER1_type -2235 185 5 232 344 141 25 chr3 33829680 33829843 -184207315 + MER91A DNA MER1_type 2 183 -13 2260 173 18 43 chr3 33831111 33831550 -184205608 + MSTA LTR MaLR 1 428 0 365 335 115 0 chr3 33831588 33831788 -184205370 - L2 LINE L2 0 3313 3091 1154 156 25 0 chr3 33833216 33833415 -184203743 - Tigger5 DNA MER2_type 0 2323 2120 1124 160 0 6 chr3 33833432 33833601 -184203557 + AluJb SINE Alu 129 296 -16 903 129 14 0 chr3 33833622 33833769 -184203389 - L1MA3 LINE L1 0 6305 6157 29573 55 7 1 chr3 33833784 33839835 -184197323 + L1PA4 LINE L1 11 6096 -59 224 327 160 40 chr3 33840120 33840270 -184196888 - L2 LINE L2 -188 3084 2917 389 327 80 24 chr3 33840363 33840614 -184196544 - L2 LINE L2 -556 2758 2494 2533 62 13 0 chr3 33841005 33841309 -184195849 - AluY SINE Alu -3 308 1 228 246 18 0 chr3 33841675 33841732 -184195426 - MIR SINE MIR -76 186 129 489 296 83 29 chr3 33844026 33844266 -184192892 + MIR SINE MIR 10 262 0 1919 196 42 11 chr3 33845055 33845433 -184191725 + MLT1B LTR MaLR 1 390 0 292 286 75 38 chr3 33845950 33846083 -184191075 + MIR3 SINE MIR 65 202 -6 716 236 89 29 chr3 33848108 33848354 -184188804 + MIR SINE MIR 2 262 0 189 0 0 0 chr3 33848519 33848540 -184188618 + (A)n Simple_repeat Simple_repeat 1 21 0 717 250 65 34 chr3 33849301 33849637 -184187521 - LTR33A LTR ERVL -2 521 140 331 111 0 19 chr3 33849778 33849832 -184187326 + LTR33A LTR ERVL 6 58 -465 414 236 142 20 chr3 33850031 33850122 -184187036 + MIR SINE MIR 2 81 -181 2004 199 40 0 chr3 33850122 33850473 -184186685 + MLT1A1 LTR MaLR 1 365 0 414 236 142 20 chr3 33850473 33850529 -184186629 + MIR SINE MIR 81 167 -95 612 268 41 21 chr3 33851310 33851504 -184185654 + MIR SINE MIR 65 262 0 243 0 0 0 chr3 33852324 33852351 -184184807 + (T)n Simple_repeat Simple_repeat 1 27 0 1880 107 4 0 chr3 33853105 33853358 -184183800 - AluSg SINE Alu -14 296 43 488 262 32 8 chr3 33853855 33853981 -184183177 + MER91B DNA MER1_type 2 130 -60 333 199 253 54 chr3 33854134 33854188 -184182970 + Charlie4 DNA MER1_type 32 74 -1887 1516 147 0 13 chr3 33854188 33854420 -184182738 - AluJb SINE Alu -83 229 1 333 199 253 54 chr3 33854420 33854531 -184182627 + Charlie4 DNA MER1_type 74 230 -1731 463 226 88 0 chr3 33854573 33854675 -184182483 + Charlie4 DNA MER1_type 1830 1940 -21 201 39 0 0 chr3 33854677 33854703 -184182455 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2110 110 0 23 chr3 33855628 33855927 -184181231 + AluSx SINE Alu 1 292 -20 261 174 22 0 chr3 33855927 33855973 -184181185 + Tigger5 DNA MER2_type 8 54 -2269 * 342 188 29 14 chr3 33855944 33856013 -184181145 + Tigger5 DNA MER2_type 2251 2320 -3 394 164 52 112 chr3 33856051 33856167 -184180991 + Tigger5 DNA MER2_type 2215 2323 0 3924 178 43 1 chr3 33856972 33857709 -184179449 + L1MB7 LINE L1 5417 6184 0 207 211 140 0 chr3 33858120 33858177 -184178981 - MIR SINE MIR -108 154 90 1088 279 73 18 chr3 33859372 33859755 -184177403 + L2 LINE L2 2365 2768 -546 282 277 297 15 chr3 33859830 33860025 -184177133 - MIR SINE MIR 0 262 13 180 176 0 0 chr3 33861442 33861476 -184175682 + GA-rich Low_complexity Low_complexity 3 36 0 1714 149 30 37 chr3 33862026 33862322 -184174836 + AluSx SINE Alu 4 297 -15 1290 213 5 0 chr3 33862724 33862945 -184174213 + MER58A DNA MER1_type 3 224 0 1017 338 69 28 chr3 33863146 33863357 -184173801 - L3 LINE CR1 -137 1440 1239 2270 125 3 0 chr3 33863357 33863668 -184173490 - AluSx SINE Alu 0 312 1 1017 338 69 28 chr3 33863668 33863965 -184173193 - L3 LINE CR1 -338 1239 911 2266 84 19 23 chr3 33864050 33864359 -184172799 - AluY SINE Alu -3 308 1 2429 91 3 0 chr3 33864407 33864715 -184172443 - AluSg SINE Alu -1 309 1 1050 313 29 8 chr3 33864891 33865274 -184171884 + MLT1I LTR MaLR 17 407 -2 316 196 147 69 chr3 33865290 33865392 -184171766 - L2 LINE L2 0 3313 3204 262 368 8 17 chr3 33865517 33865634 -184171524 + MIR SINE MIR 19 134 -74 196 339 51 42 chr3 33865648 33865766 -184171392 - L3 LINE CR1 -69 1508 1390 221 249 142 91 chr3 33866021 33866218 -184170940 - L2 LINE L2 -217 3055 2849 456 325 11 43 chr3 33867204 33867392 -184169766 - MIR SINE MIR -46 216 35 627 274 21 52 chr3 33867571 33867859 -184169299 + Charlie8 DNA MER1_type 47 272 -2145 285 269 10 58 chr3 33867926 33868030 -184169128 + MIR SINE MIR 58 156 -106 507 337 72 54 chr3 33868148 33868480 -184168678 + LTR67 LTR ERVL 149 486 -71 1325 193 86 82 chr3 33868588 33868710 -184168448 - MER69 DNA AcHobo -12 2514 2394 1929 159 0 3 chr3 33868710 33869006 -184168152 + AluJo SINE Alu 3 297 -15 1325 193 86 82 chr3 33869006 33869421 -184167737 - MER69 DNA AcHobo -132 2394 1975 30 45 0 0 chr3 33869572 33869616 -184167542 + AT_rich Low_complexity Low_complexity 1 44 0 1462 134 22 5 chr3 33869617 33869841 -184167317 - L1PA16 LINE L1 -9 6157 5930 732 112 0 0 chr3 33869976 33870083 -184167075 - L1PA16 LINE L1 -296 5870 5764 254 345 11 0 chr3 33870089 33870176 -184166982 - MER20B DNA MER1_type -580 203 116 839 271 110 3 chr3 33870195 33870487 -184166671 - MER69 DNA AcHobo -900 326 4 2065 122 0 17 chr3 33870610 33870904 -184166254 - AluSx SINE Alu -23 289 1 289 292 31 10 chr3 33871855 33871951 -184165207 - MIR3 SINE MIR -30 178 81 218 133 0 22 chr3 33872264 33872309 -184164849 + (GGAA)n Simple_repeat Simple_repeat 3 46 0 2083 133 3 7 chr3 33876421 33876723 -184160435 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr3 33876847 33876868 -184160290 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr3 33877596 33877629 -184159529 + AT_rich Low_complexity Low_complexity 1 33 0 1118 255 106 37 chr3 33877847 33878357 -184158801 - MLT1H LTR MaLR -4 545 1 262 231 111 75 chr3 33878876 33879075 -184158083 + HAL1 LINE L1 798 1003 -1504 4349 139 8 3 chr3 33879880 33880512 -184156646 - MER41B LTR ERV1 0 635 1 1249 276 74 72 chr3 33881733 33881827 -184155331 + HAL1 LINE L1 1088 1180 -1327 2268 35 0 0 chr3 33881827 33882085 -184155073 - L1PA4 LINE L1 -3 6152 5895 1249 276 74 72 chr3 33882085 33882777 -184154381 + HAL1 LINE L1 1180 1875 -632 351 298 109 37 chr3 33882873 33883222 -184153936 + HAL1 LINE L1 2019 2392 -115 2009 159 0 0 chr3 33883223 33883525 -184153633 + AluSx SINE Alu 1 302 -10 28491 62 4 3 chr3 33883537 33889679 -184147479 + L1PA5 LINE L1 1 6154 0 689 248 74 41 chr3 33890000 33890242 -184146916 + MIR SINE MIR 13 262 0 248 206 16 32 chr3 33890978 33891041 -184146117 + U7 snRNA snRNA 1 62 -1 239 237 169 0 chr3 33891979 33892038 -184145120 - L2 LINE L2 -59 3254 3186 1090 318 92 11 chr3 33892446 33892893 -184144265 + L2 LINE L2 2831 3313 0 351 0 0 0 chr3 33893082 33893121 -184144037 + (CA)n Simple_repeat Simple_repeat 2 40 0 2226 156 23 0 chr3 33894187 33894577 -184142581 + MER57A LTR ERV1 1 399 -4 607 322 99 23 chr3 33896561 33896603 -184140555 + L2 LINE L2 2987 3024 -289 1175 194 19 5 chr3 33896603 33896819 -184140339 + MER20 DNA MER1_type 1 219 0 607 322 99 23 chr3 33896819 33897080 -184140078 + L2 LINE L2 3024 3313 0 304 237 37 74 chr3 33897449 33897584 -184139574 + MLT1L LTR MaLR 205 334 -281 293 200 80 72 chr3 33897587 33897712 -184139446 + MLT1J LTR MaLR 386 511 0 441 0 0 0 chr3 33898010 33898059 -184139099 + (TG)n Simple_repeat Simple_repeat 2 50 0 243 350 43 8 chr3 33898207 33898324 -184138834 + L2 LINE L2 3137 3257 -15 2547 80 0 0 chr3 33900370 33900672 -184136486 + AluSg SINE Alu 1 302 -8 413 264 70 30 chr3 33900915 33901116 -184136042 - MLT1H LTR MaLR -57 492 284 186 341 24 63 chr3 33901800 33901926 -184135232 - L2 LINE L2 -11 3261 3141 246 350 0 88 chr3 33902104 33902241 -184134917 - L2 LINE L2 -2122 1192 1068 210 247 221 13 chr3 33903128 33903205 -184133953 + MIR SINE MIR 40 132 -130 32 26 0 0 chr3 33903279 33903318 -184133840 + AT_rich Low_complexity Low_complexity 1 39 0 583 254 240 33 chr3 33903390 33903752 -184133406 - Charlie7 DNA MER1_type -2121 491 55 784 210 132 6 chr3 33903759 33903926 -184133232 - MER5A DNA MER1_type -1 188 1 515 270 102 58 chr3 33904733 33905231 -184131927 - MLT1G1 LTR MaLR -2 593 23 707 243 29 33 chr3 33905506 33905716 -184131442 + L2 LINE L2 3103 3311 -2 237 225 38 12 chr3 33906226 33906306 -184130852 + CT-rich Low_complexity Low_complexity 4 85 0 591 180 0 0 chr3 33907278 33907378 -184129780 - 5S rRNA rRNA -21 100 1 310 297 70 57 chr3 33907796 33907979 -184129179 + MIR SINE MIR 9 192 -70 230 366 0 0 chr3 33907982 33908053 -184129105 - L2 LINE L2 -2 3270 3200 741 274 37 14 chr3 33909929 33910144 -184127014 + MIR SINE MIR 22 241 -21 213 39 0 0 chr3 33910483 33910509 -184126649 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 236 338 14 14 chr3 33911179 33911253 -184125905 - MIR3 SINE MIR -33 175 102 28783 115 14 54 chr3 33911499 33917911 -184119247 - L1PA7 LINE L1 0 6154 12 1805 268 107 30 chr3 33918248 33919273 -184117885 + L2 LINE L2 2192 3311 -2 238 182 0 18 chr3 33919350 33919405 -184117753 - Charlie4 DNA MER1_type -25 1936 1883 252 366 136 0 chr3 33919502 33919693 -184117465 - L2 LINE L2 -348 2966 2750 297 75 0 0 chr3 33920171 33920211 -184116947 + (T)n Simple_repeat Simple_repeat 1 40 0 1040 171 49 0 chr3 33920232 33920396 -184116762 - AluJb SINE Alu -140 172 1 1803 253 87 13 chr3 33920442 33920991 -184116167 - MLT1G LTR MaLR 0 590 1 263 362 16 16 chr3 33921185 33921312 -184115846 - MIR SINE MIR -66 142 16 1504 187 73 33 chr3 33922518 33922818 -184114340 + AluJb SINE Alu 1 312 0 290 269 85 54 chr3 33924183 33924313 -184112845 - L2 LINE L2 -1 3312 3179 495 275 20 13 chr3 33924317 33924466 -184112692 - L2 LINE L2 -2 3311 3162 2249 79 21 0 chr3 33924625 33924915 -184112243 + AluSp SINE Alu 1 296 -17 240 228 0 63 chr3 33924919 33924998 -184112160 + L1MC/D LINE L1 5696 5769 -2039 210 259 0 19 chr3 33925057 33925111 -184112047 + (TATG)n Simple_repeat Simple_repeat 1 53 0 715 282 167 30 chr3 33925724 33926096 -184111062 - MLT1D LTR MaLR 0 505 83 * 768 184 7 0 chr3 33926094 33926230 -184110928 + MSTD LTR MaLR 10 146 -250 252 223 21 64 chr3 33926247 33926341 -184110817 - MLT1D LTR MaLR -415 90 1 180 219 0 0 chr3 33926720 33926761 -184110397 - L2 LINE L2 -1 3312 3272 180 236 194 21 chr3 33926780 33926924 -184110234 - L2 LINE L2 -124 3189 3021 1400 263 51 99 chr3 33927006 33927185 -184109973 - L2 LINE L2 -435 2879 2693 1048 168 91 0 chr3 33927185 33927382 -184109776 - MER20 DNA MER1_type -4 215 1 1400 263 51 99 chr3 33927382 33927524 -184109634 - L2 LINE L2 -621 2693 2546 1875 173 0 13 chr3 33927524 33927831 -184109327 + AluJb SINE Alu 1 303 -9 1400 263 51 99 chr3 33927831 33928383 -184108775 - L2 LINE L2 -768 2546 2047 633 247 259 13 chr3 33929325 33929641 -184107517 - LTR33 LTR ERVL -14 507 114 1084 247 25 4 chr3 33930824 33931067 -184106091 + MIR SINE MIR 13 260 -2 216 0 0 0 chr3 33932001 33932025 -184105133 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 389 187 13 0 chr3 33932763 33932838 -184104320 - MIR3 SINE MIR -17 191 116 232 329 47 0 chr3 33934364 33934449 -184102709 + MIR SINE MIR 52 140 -68 194 289 58 0 chr3 33934642 33934694 -184102464 - L2 LINE L2 -77 3195 3141 460 231 42 28 chr3 33934726 33934869 -184102289 + MER104 DNA Tc2 32 176 -4 750 254 100 17 chr3 33936315 33936555 -184100603 + MIR SINE MIR 2 261 -1 958 174 11 58 chr3 33936673 33936863 -184100295 + MER5A DNA MER1_type 7 187 -2 2321 95 0 7 chr3 33937558 33937862 -184099296 + AluSx SINE Alu 1 302 -10 223 296 122 41 chr3 33938139 33938237 -184098921 - MIR SINE MIR -63 145 40 378 185 0 49 chr3 33938513 33938594 -184098564 + MER3 DNA MER1_type 5 81 -128 30 18 0 54 chr3 33938594 33938630 -184098528 + AT_rich Low_complexity Low_complexity 1 35 -18 2359 87 0 7 chr3 33938630 33938929 -184098229 + AluSq SINE Alu 1 297 -16 30 18 0 54 chr3 33938929 33938948 -184098210 + AT_rich Low_complexity Low_complexity 35 53 0 267 237 17 0 chr3 33939251 33939310 -184097848 + CT-rich Low_complexity Low_complexity 2 61 0 24 0 0 0 chr3 33940622 33940646 -184096512 + AT_rich Low_complexity Low_complexity 1 24 0 282 226 0 0 chr3 33940995 33941057 -184096101 + MLT1K LTR MaLR 506 567 -21 304 313 100 51 chr3 33941069 33941574 -184095584 - L2 LINE L2 -128 3144 2566 562 228 48 18 chr3 33944383 33944550 -184092608 + MIR SINE MIR 66 237 -25 223 441 26 7 chr3 33944626 33944778 -184092380 - L2 LINE L2 0 3272 3118 903 182 0 0 chr3 33945038 33945192 -184091966 + MLT1A1 LTR MaLR 1 154 -211 473 179 0 12 chr3 33945196 33945280 -184091878 + FLAM_A SINE Alu 1 83 -59 1051 165 37 0 chr3 33945302 33945490 -184091668 + MLT1A1 LTR MaLR 170 364 -1 220 259 0 0 chr3 33945767 33945821 -184091337 - L2 LINE L2 -10 3303 3250 16697 164 31 10 chr3 33945889 33952612 -184084546 - L1PB1 LINE L1 -2 6865 3 248 336 129 9 chr3 33952792 33952908 -184084250 + MIR3 SINE MIR 76 205 -3 236 310 108 0 chr3 33953988 33954117 -184083041 - MIR SINE MIR -118 144 2 280 293 18 93 chr3 33954376 33954656 -184082502 + MLT1J LTR MaLR 99 357 -154 597 272 17 64 chr3 33954905 33955140 -184082018 + MIR SINE MIR 39 262 0 221 118 0 39 chr3 33955906 33955957 -184081201 + (TAAAAA)n Simple_repeat Simple_repeat 5 53 0 532 282 67 29 chr3 33956529 33956816 -184080342 + L1ME LINE L1 749 1066 -5004 2174 118 7 3 chr3 33956816 33957120 -184080038 - AluSx SINE Alu -7 305 1 532 282 67 29 chr3 33957120 33957269 -184079889 + L1ME LINE L1 1066 1208 -4862 5768 79 8 15 chr3 33957340 33957927 -184079231 + L1MA1 LINE L1 5486 6068 -234 2233 105 7 0 chr3 33957927 33958223 -184078935 + AluSg SINE Alu 1 298 -12 5768 79 8 15 chr3 33958223 33958454 -184078704 + L1MA1 LINE L1 6068 6299 -3 198 0 0 0 chr3 33958931 33958953 -184078205 + (A)n Simple_repeat Simple_repeat 1 22 0 190 207 103 35 chr3 33959636 33959694 -184077464 - L2 LINE L2 -14 3258 3197 816 144 0 0 chr3 33960281 33960399 -184076759 + FLAM_C SINE Alu 1 118 -25 694 230 94 0 chr3 33960646 33960837 -184076321 - MER3 DNA MER1_type 0 209 1 1866 183 20 50 chr3 33961366 33961766 -184075392 - MLT1B LTR MaLR 0 390 3 1053 216 44 20 chr3 33962875 33963171 -184073987 + LTR16C LTR ERVL 187 489 -2 1572 129 276 18 chr3 33963259 33963599 -184073559 - MSTA LTR MaLR 0 428 1 207 191 0 24 chr3 33963781 33963798 -184073360 + (CAA)n Simple_repeat Simple_repeat 2 18 -24 2121 116 0 0 chr3 33963798 33964082 -184073076 + AluSg SINE Alu 1 284 -26 207 191 0 24 chr3 33964082 33964106 -184073052 + (CAA)n Simple_repeat Simple_repeat 18 42 0 454 266 0 24 chr3 33965738 33965862 -184071296 - MER63A DNA MER1_type -36 174 54 1622 239 173 9 chr3 33966054 33966725 -184070433 - MER20B DNA MER1_type 0 784 4 540 200 57 91 chr3 33967644 33967782 -184069376 - L1ME3A LINE L1 0 6170 6042 2338 98 3 16 chr3 33967782 33968099 -184069059 + AluSp SINE Alu 1 313 0 540 200 57 91 chr3 33968099 33968190 -184068968 - L1ME3A LINE L1 -128 6042 5949 1820 227 25 57 chr3 33968190 33968830 -184068328 - L1ME3A LINE L1 -183 5987 5371 2910 212 29 60 chr3 33968934 33969897 -184067261 - L1ME1 LINE L1 -5 6161 5254 2094 102 0 0 chr3 33969897 33970162 -184066996 - AluSq SINE Alu -24 289 25 2910 212 29 60 chr3 33970162 33970520 -184066638 - L1ME1 LINE L1 -912 5254 4887 413 327 133 41 chr3 33970839 33971154 -184066004 - L2 LINE L2 0 3313 2970 1562 186 36 25 chr3 33971154 33971434 -184065724 + AluJb SINE Alu 1 283 -29 820 209 71 33 chr3 33971587 33971798 -184065360 - MER58A DNA MER1_type -5 219 1 2095 115 70 48 chr3 33972401 33972757 -184064401 + THE1B LTR MaLR 1 364 0 872 246 126 39 chr3 33972863 33973277 -184063881 - MLT1J LTR MaLR -40 471 22 280 283 29 102 chr3 33973412 33973617 -184063541 - MIR SINE MIR -60 202 13 729 216 196 4 chr3 33973649 33973904 -184063254 - MER31B LTR ERV1 0 485 180 1055 241 48 58 chr3 33973926 33974400 -184062758 - MER39 LTR ERV1 -20 687 4 599 196 19 32 chr3 33974405 33974563 -184062595 - MER31B LTR ERV1 -310 156 1 180 111 0 0 chr3 33975132 33975159 -184061999 + (TG)n Simple_repeat Simple_repeat 2 28 0 374 258 0 19 chr3 33975757 33975912 -184061246 + (TGGA)n Simple_repeat Simple_repeat 1 152 0 2087 97 37 10 chr3 33976447 33976747 -184060411 - AluSg SINE Alu -2 308 1 796 246 98 5 chr3 33976754 33976957 -184060201 - MIR SINE MIR -39 223 2 716 167 39 26 chr3 33976994 33977150 -184060008 + MER3 DNA MER1_type 5 162 -47 1050 215 18 5 chr3 33977936 33978155 -184059003 + MER58A DNA MER1_type 1 222 -2 384 340 61 21 chr3 33978171 33978522 -184058636 + L1MC4a LINE L1 5540 5790 -331 209 302 63 0 chr3 33978588 33978651 -184058507 + L2 LINE L2 3244 3310 -3 320 204 129 21 chr3 33982219 33982312 -184054846 + MIR SINE MIR 44 146 -62 816 235 40 10 chr3 33982350 33982550 -184054608 - MIR SINE MIR -51 211 6 180 0 0 0 chr3 33986032 33986052 -184051106 + (T)n Simple_repeat Simple_repeat 1 20 0 2547 74 0 3 chr3 33989574 33989884 -184047274 - AluSc SINE Alu 0 309 1 217 195 143 13 chr3 33991978 33992055 -184045103 + MIR SINE MIR 120 206 -56 236 239 141 43 chr3 33992344 33992436 -184044722 + MARNA DNA Mariner 75 175 -411 354 336 32 24 chr3 33992454 33992579 -184044579 - L2 LINE L2 -7 3265 3140 232 284 27 0 chr3 33992660 33992734 -184044424 - MARNA DNA Mariner -259 327 252 580 303 166 14 chr3 33992967 33993383 -184043775 - MLT1H1 LTR MaLR -2 553 75 302 184 103 46 chr3 33993576 33993663 -184043495 - MIR SINE MIR -71 191 100 503 161 154 74 chr3 33993920 33994017 -184043141 - MER5A DNA MER1_type -4 185 68 2327 80 23 0 chr3 33994017 33994316 -184042842 - AluSp SINE Alu -7 306 1 503 161 154 74 chr3 33994316 33994380 -184042778 - MER5A DNA MER1_type -121 68 11 778 266 138 7 chr3 33995865 33996147 -184041011 + MER5C DNA MER1_type 4 322 -2 216 0 0 0 chr3 33997326 33997350 -184039808 + (T)n Simple_repeat Simple_repeat 1 24 0 207 0 0 0 chr3 33997431 33997454 -184039704 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 324 0 0 0 chr3 33997453 33997489 -184039669 + (GA)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr3 33997803 33997824 -184039334 + AT_rich Low_complexity Low_complexity 1 21 0 550 276 8 0 chr3 33997876 33998003 -184039155 - MER5B DNA MER1_type -50 128 1 187 308 146 31 chr3 33998011 33998141 -184039017 + L2 LINE L2 3168 3312 -1 483 255 77 48 chr3 33998771 33998979 -184038179 + L1ME4a LINE L1 5495 5708 -413 270 281 148 32 chr3 33998982 33999199 -184037959 + L1ME4a LINE L1 5822 6063 -58 555 361 73 31 chr3 33999717 34000501 -184036657 - L2 LINE L2 -8 3305 2486 411 292 169 13 chr3 34000909 34001063 -184036095 - MER5A DNA MER1_type -3 186 9 2162 92 4 0 chr3 34001198 34001505 -184035653 - AluSx SINE Alu 0 319 12 237 319 58 43 chr3 34001593 34001731 -184035427 + MIR SINE MIR 42 181 -81 1851 162 13 3 chr3 34002381 34002689 -184034469 + AluSq SINE Alu 1 311 -2 1806 258 63 0 chr3 34003336 34003767 -184033391 - MLT1H LTR MaLR 0 549 92 932 94 0 16 chr3 34003814 34003941 -184033217 - FLAM_C SINE Alu -18 125 1 180 309 0 0 chr3 34004094 34004136 -184033022 + L2 LINE L2 3248 3289 -24 2406 85 0 0 chr3 34004151 34004444 -184032714 + AluSc SINE Alu 1 293 -16 34 93 0 0 chr3 34005415 34005512 -184031646 + AT_rich Low_complexity Low_complexity 1 97 0 419 244 98 55 chr3 34005669 34005923 -184031235 - L1ME LINE L1 -297 5824 5560 592 244 155 16 chr3 34006721 34006914 -184030244 + MIR SINE MIR 20 239 -23 184 256 93 0 chr3 34006880 34006923 -184030235 + L2 LINE L2 3251 3297 -16 * 198 0 0 0 chr3 34006947 34006969 -184030189 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2239 68 3 31 chr3 34006971 34007264 -184029894 - AluSp SINE Alu -28 285 1 1084 215 20 0 chr3 34007463 34007658 -184029500 - MER58A DNA MER1_type 0 224 26 381 289 13 15 chr3 34008001 34008180 -184028978 - MLT1H LTR MaLR 0 549 310 1025 322 31 14 chr3 34010051 34010411 -184026747 - MLT1I LTR MaLR -4 405 40 638 316 0 5 chr3 34010990 34011186 -184025972 + L2 LINE L2 3119 3313 0 1940 250 68 77 chr3 34011923 34012523 -184024635 - MLT1G LTR MaLR 0 590 1 860 103 13 77 chr3 34014100 34014255 -184022903 + AluSg/x SINE Alu 150 294 -16 2120 116 0 7 chr3 34014269 34014562 -184022596 + AluSx SINE Alu 1 291 -21 774 237 34 0 chr3 34015198 34015386 -184021772 + MER58B DNA MER1_type 139 338 -3 2610 55 0 0 chr3 34015408 34015718 -184021440 + AluY SINE Alu 1 310 -1 399 224 21 0 chr3 34015789 34015895 -184021263 + MIR SINE MIR 36 147 -76 193 283 0 0 chr3 34016120 34016166 -184020992 - MIR SINE MIR -5 257 212 242 277 75 43 chr3 34016305 34016399 -184020759 + L2 LINE L2 3163 3259 -13 902 254 24 27 chr3 34016836 34017091 -184020067 - MIR SINE MIR 0 262 3 2280 116 3 0 chr3 34017350 34017653 -184019505 - AluSp SINE Alu -9 304 1 441 280 8 17 chr3 34018688 34018806 -184018352 - MLT1H LTR MaLR -376 173 57 460 215 84 28 chr3 34018899 34019006 -184018152 - L2 LINE L2 -2 3311 3199 225 256 147 62 chr3 34019160 34019289 -184017869 + MIR3 SINE MIR 8 147 -61 216 0 0 0 chr3 34019485 34019509 -184017649 + (T)n Simple_repeat Simple_repeat 1 24 0 543 259 21 0 chr3 34019515 34019658 -184017500 - MIR SINE MIR -67 195 50 228 204 0 0 chr3 34020758 34020802 -184016356 - L2 LINE L2 -2 3270 3227 186 198 19 160 chr3 34020829 34020901 -184016257 + L2 LINE L2 3223 3277 -36 2008 194 82 45 chr3 34020901 34021437 -184015721 - LTR38 LTR ERV1 0 556 1 186 198 19 160 chr3 34021437 34021470 -184015688 + L2 LINE L2 3277 3313 0 180 356 35 0 chr3 34021707 34021794 -184015364 - L2 LINE L2 -230 3042 2953 319 269 146 87 chr3 34021949 34022224 -184014934 + L2 LINE L2 3011 3301 -12 391 210 29 123 chr3 34023618 34023756 -184013402 - MLT1J1 LTR MaLR -321 125 1 235 203 25 101 chr3 34023764 34023843 -184013315 - MIR SINE MIR -71 191 119 28 0 0 0 chr3 34025113 34025141 -184012017 + AT_rich Low_complexity Low_complexity 1 28 0 2037 109 27 24 chr3 34025526 34025820 -184011338 - AluSx SINE Alu -17 295 1 269 294 0 101 chr3 34025825 34025944 -184011214 + MIR SINE MIR 156 262 0 29 28 0 0 chr3 34026046 34026082 -184011076 + AT_rich Low_complexity Low_complexity 1 36 0 1186 176 32 23 chr3 34026353 34026569 -184010589 - MER20 DNA MER1_type 0 219 2 2046 102 3 38 chr3 34026573 34026886 -184010272 + AluSq SINE Alu 1 302 -11 339 243 232 22 chr3 34026960 34027145 -184010013 - MIR SINE MIR -8 254 31 2036 111 7 7 chr3 34028674 34028963 -184008195 - AluSx SINE Alu -21 291 3 2082 135 3 3 chr3 34029099 34029403 -184007755 + AluSx SINE Alu 1 304 -8 467 273 100 7 chr3 34030132 34030282 -184006876 + MIR SINE MIR 98 261 -1 29 0 0 0 chr3 34030383 34030412 -184006746 + AT_rich Low_complexity Low_complexity 1 29 0 2155 115 3 0 chr3 34030413 34030699 -184006459 - AluSx SINE Alu -25 287 1 955 142 0 7 chr3 34030713 34030868 -184006290 - AluSg/x SINE Alu -7 303 150 215 288 68 0 chr3 34031226 34031299 -184005859 - L2 LINE L2 -7 3265 3188 1600 194 20 3 chr3 34031927 34032221 -184004937 + AluJb SINE Alu 7 305 -7 2250 87 0 26 chr3 34032242 34032551 -184004607 + AluSg SINE Alu 1 301 -9 22 0 0 0 chr3 34032586 34032608 -184004550 + AT_rich Low_complexity Low_complexity 1 22 0 280 288 117 0 chr3 34033551 34033662 -184003496 + L2 LINE L2 3140 3263 -9 877 193 24 70 chr3 34033707 34033849 -184003309 + MER3 DNA MER1_type 1 131 -78 2300 93 0 7 chr3 34033849 34034185 -184002973 - AluSg SINE Alu 0 310 1 877 193 24 70 chr3 34034185 34034255 -184002903 + MER3 DNA MER1_type 131 203 -6 1064 118 12 17 chr3 34034773 34035986 -184001172 - HSATII Satellite Satellite -9 1207 1 878 116 5 0 chr3 34036009 34036448 -184000710 - HSATII Satellite Satellite -9 441 1 1802 163 28 0 chr3 34036991 34037279 -183999879 - AluJb SINE Alu -16 296 1 923 112 19 14 chr3 34037706 34038402 -183998756 - HSATII Satellite Satellite 0 699 1 899 130 3 17 chr3 34038432 34038782 -183998376 - HSATII Satellite Satellite -148 345 1 907 105 13 19 chr3 34038809 34039127 -183998031 - HSATII Satellite Satellite 0 316 1 724 126 19 19 chr3 34039152 34039311 -183997847 - HSATII Satellite Satellite 0 170 12 789 155 2 0 chr3 34039468 34039842 -183997316 + (GAATG)n Satellite Satellite 1 374 0 1092 101 0 0 chr3 34039854 34040032 -183997126 + (GAATG)n Satellite Satellite 2 179 0 1119 125 3 3 chr3 34040060 34040378 -183996780 + (GAATG)n Satellite Satellite 1 318 0 522 103 0 0 chr3 34040393 34040480 -183996678 + (GAATG)n Satellite Satellite 5 91 0 956 117 8 14 chr3 34040645 34041726 -183995432 - HSATII Satellite Satellite -31 1075 1 193 317 0 0 chr3 34042309 34042350 -183994808 + MIR SINE MIR 35 75 -187 309 237 13 13 chr3 34042494 34042570 -183994588 - MIR SINE MIR -60 202 127 704 216 95 0 chr3 34043058 34043206 -183993952 - MER5A DNA MER1_type -25 164 3 236 309 0 0 chr3 34043206 34043261 -183993897 - Charlie8 DNA MER1_type -2228 189 135 283 261 37 90 chr3 34043398 34043532 -183993626 - Charlie8 DNA MER1_type -2290 127 1 968 256 58 0 chr3 34044016 34044258 -183992900 - MIR SINE MIR 0 262 7 1260 156 51 78 chr3 34044629 34044708 -183992450 - MER33 DNA MER1_type -2261 324 244 2477 71 3 0 chr3 34044708 34045018 -183992140 - AluY SINE Alu 0 311 1 1260 156 51 78 chr3 34045018 34045271 -183991887 - MER33 DNA MER1_type -2341 244 1 21 71 0 0 chr3 34045683 34045725 -183991433 + AT_rich Low_complexity Low_complexity 1 42 0 1469 184 103 3 chr3 34046656 34046966 -183990192 + MER58B DNA MER1_type 1 341 0 220 266 94 16 chr3 34048676 34048740 -183988418 - L2 LINE L2 -3 3269 3201 24 67 0 0 chr3 34052873 34052918 -183984240 + AT_rich Low_complexity Low_complexity 1 45 0 767 171 17 97 chr3 34053757 34053828 -183983330 - MER45A DNA AcHobo -1405 176 101 1943 141 3 13 chr3 34053828 34054127 -183983031 + AluSq SINE Alu 1 296 -17 767 171 17 97 chr3 34054127 34054230 -183982928 - MER45A DNA AcHobo -1480 101 16 22 35 0 0 chr3 34055153 34055182 -183981976 + AT_rich Low_complexity Low_complexity 1 29 0 465 19 0 0 chr3 34056421 34056475 -183980683 + (CA)n Simple_repeat Simple_repeat 2 55 0 623 263 80 10 chr3 34057072 34057283 -183979875 - MIR SINE MIR 0 262 40 2240 70 11 3 chr3 34059066 34059376 -183977782 - AluSp SINE Alu 0 312 1 291 299 86 32 chr3 34059730 34059917 -183977241 - MIR3 SINE MIR -6 202 6 589 287 111 21 chr3 34060060 34060447 -183976711 - MER113 DNA MER1_type? -47 474 53 912 183 21 83 chr3 34061799 34062088 -183975070 - LTR37B LTR ERV1 0 468 198 319 267 29 9 chr3 34062146 34062251 -183974907 - LTR37B LTR ERV1 -293 175 69 1066 235 0 0 chr3 34062256 34062460 -183974698 + MER3 DNA MER1_type 6 209 0 275 263 13 0 chr3 34062460 34062529 -183974629 - LTR37B LTR ERV1 -392 76 7 2167 109 6 37 chr3 34062644 34062966 -183974192 - AluSx SINE Alu 0 312 1 268 280 20 70 chr3 34065021 34065121 -183972037 + MLT1L LTR MaLR 437 531 -84 411 318 31 51 chr3 34066001 34066196 -183970962 - MIR3 SINE MIR 0 208 18 1177 292 67 43 chr3 34066255 34066762 -183970396 - MLT1K LTR MaLR 0 588 70 679 235 22 123 chr3 34066903 34066958 -183970200 - MIR SINE MIR 0 262 203 2010 81 55 68 chr3 34066958 34067266 -183969892 - AluSq SINE Alu -9 304 1 679 235 22 123 chr3 34067266 34067478 -183969680 - MIR SINE MIR -59 203 22 1306 101 0 0 chr3 34068296 34068464 -183968694 + AluSg/x SINE Alu 139 306 -6 1684 170 0 33 chr3 34068511 34068817 -183968341 + AluJb SINE Alu 1 296 -16 824 245 13 0 chr3 34068822 34068977 -183968181 - MER58A DNA MER1_type 0 157 1 225 356 58 0 chr3 34069338 34069425 -183967733 + L2 LINE L2 3140 3231 -41 22 0 0 0 chr3 34071078 34071100 -183966058 + AT_rich Low_complexity Low_complexity 1 22 0 346 352 57 12 chr3 34071289 34071536 -183965622 + MIR SINE MIR 1 258 -4 232 224 0 0 chr3 34072330 34072379 -183964779 - MIR SINE MIR -139 123 75 2064 126 0 7 chr3 34072529 34072823 -183964335 + AluSx SINE Alu 1 292 -20 520 284 50 23 chr3 34072867 34073085 -183964073 - MER113 DNA MER1_type? 0 521 298 594 199 147 6 chr3 34073124 34073280 -183963878 - MER58A DNA MER1_type 0 224 47 2481 70 3 6 chr3 34073306 34073618 -183963540 - AluY SINE Alu 0 311 1 632 204 94 25 chr3 34073623 34073824 -183963334 - MER113 DNA MER1_type? -306 215 1 814 232 76 31 chr3 34074126 34074350 -183962808 + MIR SINE MIR 8 241 -21 187 336 93 21 chr3 34074686 34074826 -183962332 + L2 LINE L2 2827 2976 -337 1853 130 34 31 chr3 34075195 34075548 -183961610 + AluSg SINE Alu 1 354 0 225 0 0 0 chr3 34075849 34075874 -183961284 + (CA)n Simple_repeat Simple_repeat 2 26 0 427 210 92 8 chr3 34075874 34075993 -183961165 - MER104 DNA Tc2 -5 175 47 1994 238 66 29 chr3 34077420 34078012 -183959146 + L1ME3 LINE L1 5448 6061 -101 1980 175 0 0 chr3 34078805 34079114 -183958044 - AluSx SINE Alu -3 309 1 21 0 0 0 chr3 34079124 34079145 -183958013 + AT_rich Low_complexity Low_complexity 1 21 0 4376 187 39 19 chr3 34079471 34080355 -183956803 + L1MB7 LINE L1 5283 6183 -1 2264 234 70 37 chr3 34080977 34081725 -183955433 - L1ME2 LINE L1 -9 6155 5384 21 0 0 0 chr3 34081725 34081746 -183955412 + AT_rich Low_complexity Low_complexity 1 21 0 1208 179 61 5 chr3 34082176 34082388 -183954770 + MER58A DNA MER1_type 1 224 0 406 268 105 13 chr3 34082747 34082900 -183954258 - MARNA DNA Mariner -329 257 91 428 279 58 13 chr3 34083820 34083974 -183953184 + MIR3 SINE MIR 21 181 -27 281 237 0 0 chr3 34084245 34084304 -183952854 - MIR SINE MIR -114 148 90 232 326 21 42 chr3 34085622 34085766 -183951392 - MIR SINE MIR -67 141 3 350 147 15 0 chr3 34086783 34086851 -183950307 + CT-rich Low_complexity Low_complexity 3 71 0 2136 123 3 19 chr3 34086899 34087216 -183949942 - AluSx SINE Alu 0 312 1 670 257 38 105 chr3 34087701 34088121 -183949037 - L2 LINE L2 0 3313 2922 596 319 112 50 chr3 34088100 34088746 -183948412 - L2 LINE L2 -40 3232 2543 * 317 129 0 16 chr3 34088837 34088899 -183948259 + (TGGA)n Simple_repeat Simple_repeat 3 63 0 352 284 173 19 chr3 34089248 34089410 -183947748 - MER5A DNA MER1_type 0 189 3 377 222 158 103 chr3 34091257 34091676 -183945482 + L1ME1 LINE L1 5507 5948 -222 638 242 13 0 chr3 34091816 34091969 -183945189 + L1ME1 LINE L1 6010 6164 -2 27 0 0 0 chr3 34092006 34092033 -183945125 + AT_rich Low_complexity Low_complexity 1 27 0 187 340 31 0 chr3 34092090 34092187 -183944971 + L2 LINE L2 2734 2833 -481 2043 179 50 64 chr3 34092519 34093017 -183944141 - MLT1D LTR MaLR -10 495 5 955 257 147 47 chr3 34093132 34093533 -183943625 - LTR16C LTR ERVL -17 474 34 631 52 10 21 chr3 34093533 34093630 -183943528 + (TAGA)n Simple_repeat Simple_repeat 2 97 0 186 103 0 0 chr3 34093637 34093666 -183943492 + (TG)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr3 34093904 34093925 -183943233 + AT_rich Low_complexity Low_complexity 1 21 0 491 301 119 35 chr3 34096332 34096558 -183940600 + MIR SINE MIR 18 262 0 347 263 0 137 chr3 34097507 34097595 -183939563 + MIR SINE MIR 43 97 -165 2517 72 16 3 chr3 34097595 34097916 -183939242 - L1PA7 LINE L1 -1 6153 5829 347 263 0 137 chr3 34097916 34098002 -183939156 + MIR SINE MIR 97 193 -69 416 163 12 81 chr3 34098065 34098151 -183939007 + Tigger5 DNA MER2_type 2237 2316 -7 462 229 16 25 chr3 34098377 34098499 -183938659 - MIR SINE MIR -63 145 25 714 218 249 16 chr3 34100677 34100934 -183936224 + MER5C DNA MER1_type 2 318 -6 253 324 165 39 chr3 34101499 34101681 -183935477 - L3 LINE CR1 -222 1355 1151 285 217 0 0 chr3 34101717 34101800 -183935358 + T-rich Low_complexity Low_complexity 1 83 0 550 271 57 21 chr3 34101811 34102003 -183935155 - L3 LINE CR1 -441 1136 938 274 218 36 0 chr3 34102003 34102058 -183935100 + Tigger2 DNA MER2_type 1 57 -2661 1230 206 19 0 chr3 34102062 34102271 -183934887 - MER8 DNA MER2_type -26 213 1 1016 200 0 11 chr3 34103185 34103360 -183933798 + MER58A DNA MER1_type 1 173 -51 255 243 125 44 chr3 34103546 34103682 -183933476 + L2 LINE L2 3167 3313 0 221 294 0 0 chr3 34104162 34104213 -183932945 + polypurine Low_complexity Low_complexity 4 54 0 369 217 84 133 chr3 34104244 34104447 -183932711 + MER117 DNA MER1_type 2 194 -3 393 263 247 0 chr3 34104964 34105154 -183932004 - MIR SINE MIR -13 249 13 277 235 96 2 chr3 34105194 34105352 -183931806 + MER20 DNA MER1_type 11 205 -14 646 290 117 25 chr3 34106099 34106534 -183930624 + L1ME4a LINE L1 5631 6105 -16 1672 140 70 7 chr3 34107129 34107426 -183929732 - AluSx SINE Alu 0 314 1 742 270 120 54 chr3 34107933 34108645 -183928513 - L2 LINE L2 -2 3311 2552 22 0 0 0 chr3 34108965 34108987 -183928171 + AT_rich Low_complexity Low_complexity 1 22 0 288 232 73 12 chr3 34109039 34109121 -183928037 - L1ME4a LINE L1 -239 5882 5796 231 146 0 0 chr3 34109895 34109936 -183927222 + (TGGA)n Simple_repeat Simple_repeat 4 44 0 180 0 0 0 chr3 34110822 34110842 -183926316 + (A)n Simple_repeat Simple_repeat 1 20 0 600 336 133 18 chr3 34111518 34111908 -183925250 + L3 LINE CR1 747 1181 -396 253 308 85 27 chr3 34111962 34112115 -183925043 - MIR SINE MIR -79 129 22 271 118 0 39 chr3 34112148 34112199 -183924959 + MIR3 SINE MIR 155 203 -5 1982 151 21 78 chr3 34112469 34112798 -183924360 - MLT1A1 LTR MaLR 0 365 60 2496 103 103 0 chr3 34112798 34113157 -183924001 - L1PA10 LINE L1 -5 6163 5768 1982 151 21 78 chr3 34113157 34113212 -183923946 - MLT1A1 LTR MaLR -305 60 3 312 309 135 35 chr3 34113573 34113855 -183923303 - L2 LINE L2 -787 2527 2218 392 266 87 17 chr3 34114922 34115095 -183922063 + L1MC5 LINE L1 7727 7911 -50 194 309 0 0 chr3 34116016 34116071 -183921087 + L2 LINE L2 2927 2981 -332 970 229 23 14 chr3 34116548 34116766 -183920392 + MER58A DNA MER1_type 5 224 0 214 268 85 12 chr3 34116768 34116850 -183920308 + L2 LINE L2 3150 3237 -35 2544 164 33 19 chr3 34116863 34117284 -183919874 - MSTC LTR MaLR -1 427 1 183 80 0 0 chr3 34117314 34117339 -183919819 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 905 274 62 15 chr3 34117383 34117723 -183919435 + L2 LINE L2 2946 3301 -12 503 271 90 32 chr3 34118740 34118928 -183918230 + MIR SINE MIR 31 229 -33 414 0 0 0 chr3 34119322 34119368 -183917790 + (CA)n Simple_repeat Simple_repeat 1 46 0 277 284 69 20 chr3 34119372 34119474 -183917684 + L2 LINE L2 3205 3311 -2 229 361 0 0 chr3 34121404 34121487 -183915671 - L2 LINE L2 -3 3310 3228 192 368 125 14 chr3 34121670 34121814 -183915344 + L2 LINE L2 3140 3299 -14 482 250 0 11 chr3 34121834 34122014 -183915144 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 195 167 0 0 chr3 34122043 34122085 -183915073 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 207 100 0 0 chr3 34122135 34122165 -183914993 + (TGGA)n Simple_repeat Simple_repeat 1 30 0 186 222 0 0 chr3 34122881 34122935 -183914223 + CT-rich Low_complexity Low_complexity 4 57 0 413 324 7 35 chr3 34123210 34123352 -183913806 - MIR SINE MIR -114 148 11 413 213 191 100 chr3 34123580 34123810 -183913348 - MLT1H LTR MaLR -13 536 286 190 275 134 74 chr3 34124322 34124471 -183912687 + L3b LINE CR1 1316 1473 -110 223 353 49 25 chr3 34126813 34126935 -183910223 - L2 LINE L2 -6 3266 3142 645 282 18 0 chr3 34127354 34127518 -183909640 + MIR SINE MIR 17 190 -63 308 111 0 0 chr3 34127735 34127780 -183909378 + L2 LINE L2 3269 3313 0 209 322 35 23 chr3 34128065 34128152 -183909006 - MIR SINE MIR -86 122 35 182 257 57 29 chr3 34129070 34129140 -183908018 + MIR SINE MIR 114 185 -77 2377 210 33 24 chr3 34129333 34129913 -183907245 - L1MB7 LINE L1 -20 6164 5580 397 235 78 65 chr3 34130457 34130610 -183906548 + MIR SINE MIR 72 226 -36 203 333 0 15 chr3 34130682 34130748 -183906410 + CT-rich Low_complexity Low_complexity 2 66 0 186 197 45 15 chr3 34131168 34131234 -183905924 - L2 LINE L2 -24 3248 3181 21 36 0 0 chr3 34131334 34131362 -183905796 + AT_rich Low_complexity Low_complexity 1 28 0 1733 153 10 24 chr3 34132754 34133049 -183904109 + AluJo SINE Alu 6 296 -16 255 103 0 0 chr3 34133499 34133538 -183903620 + (ATG)n Simple_repeat Simple_repeat 2 40 0 1071 254 47 0 chr3 34133837 34134050 -183903108 - MER58A DNA MER1_type -1 223 1 21 0 0 0 chr3 34134630 34134651 -183902507 + AT_rich Low_complexity Low_complexity 1 21 0 267 220 9 18 chr3 34135681 34135790 -183901368 + (TGGA)n Simple_repeat Simple_repeat 3 110 0 207 100 0 0 chr3 34135840 34135870 -183901288 + (TGGA)n Simple_repeat Simple_repeat 1 30 0 186 222 0 0 chr3 34136586 34136640 -183900518 + CT-rich Low_complexity Low_complexity 4 57 0 341 345 7 35 chr3 34136915 34137057 -183900101 - MIR SINE MIR -114 148 11 473 201 154 69 chr3 34137271 34137516 -183899642 - MLT1H LTR MaLR 0 536 286 200 269 134 74 chr3 34138028 34138177 -183898981 + L3b LINE CR1 1316 1473 -110 223 353 49 25 chr3 34140518 34140640 -183896518 - L2 LINE L2 -6 3266 3142 645 282 18 0 chr3 34141059 34141223 -183895935 + MIR SINE MIR 17 190 -63 294 111 0 0 chr3 34141440 34141485 -183895673 + L2 LINE L2 3269 3313 0 202 245 20 0 chr3 34141808 34141857 -183895301 - MIR SINE MIR -124 84 35 2448 207 33 22 chr3 34143042 34143621 -183893537 - L1MB7 LINE L1 -20 6164 5580 353 235 78 65 chr3 34144168 34144321 -183892837 + MIR SINE MIR 72 226 -36 203 333 0 15 chr3 34144393 34144459 -183892699 + CT-rich Low_complexity Low_complexity 2 66 0 21 36 0 0 chr3 34145046 34145074 -183892084 + AT_rich Low_complexity Low_complexity 1 28 0 360 0 0 0 chr3 34145881 34145921 -183891237 + (CA)n Simple_repeat Simple_repeat 2 41 0 237 288 120 8 chr3 34146057 34146182 -183890976 - L2 LINE L2 0 3313 3175 189 244 0 0 chr3 34146617 34146658 -183890500 + L2 LINE L2 3228 3268 -4 414 220 240 0 chr3 34147140 34147290 -183889868 - MER5A DNA MER1_type 0 189 4 377 284 118 6 chr3 34147547 34147716 -183889442 + MIR SINE MIR 21 208 -54 799 299 20 4 chr3 34148221 34148465 -183888693 - MIR SINE MIR -11 251 4 658 223 139 14 chr3 34148962 34149177 -183887981 + LTR16C LTR ERVL 231 472 -19 420 318 52 0 chr3 34150123 34150296 -183886862 + MIR SINE MIR 52 233 -29 284 258 54 11 chr3 34150809 34150902 -183886256 + MIR SINE MIR 34 130 -78 1617 147 130 7 chr3 34150938 34151238 -183885920 - MER1B DNA MER1_type 0 337 1 1510 178 82 79 chr3 34151286 34151752 -183885406 - MLT1C LTR MaLR 0 467 1 504 311 23 14 chr3 34153067 34153286 -183883872 + MIR SINE MIR 37 257 -5 398 240 87 59 chr3 34154849 34155103 -183882055 - L1MC5 LINE L1 -192 7769 7509 1656 229 28 16 chr3 34155111 34155534 -183881624 - L1ME1 LINE L1 -5 6161 5734 1105 230 87 38 chr3 34155531 34155957 -183881201 - L1MC5 LINE L1 -442 7519 7073 * 2246 105 0 3 chr3 34155992 34156288 -183880870 + AluSg SINE Alu 1 295 -15 283 101 14 87 chr3 34157453 34157493 -183879665 - MIR SINE MIR -115 147 112 1449 199 70 22 chr3 34157493 34157850 -183879308 + MLT1A2 LTR MaLR 1 374 0 283 101 14 87 chr3 34157850 34157878 -183879280 - MIR SINE MIR -150 112 84 310 282 80 37 chr3 34158696 34158859 -183878299 + MIR SINE MIR 84 253 -9 208 185 37 19 chr3 34160023 34160077 -183877081 + CT-rich Low_complexity Low_complexity 2 56 0 378 269 126 85 chr3 34160077 34160667 -183876491 - L2 LINE L2 -5 3308 2684 805 262 34 0 chr3 34160925 34161158 -183876000 + MIR SINE MIR 22 262 0 211 235 0 0 chr3 34161182 34161233 -183875925 - MIR SINE MIR -103 159 109 398 280 0 0 chr3 34161707 34161807 -183875351 - MIR SINE MIR -141 121 22 341 264 86 43 chr3 34162018 34162158 -183875000 + L2 LINE L2 2909 3054 -218 742 259 93 5 chr3 34162883 34163099 -183874059 + MIR SINE MIR 8 242 -20 838 211 78 16 chr3 34163190 34163446 -183873712 + MER33 DNA MER1_type 1 272 -52 436 284 30 37 chr3 34163858 34163992 -183873166 - L2 LINE L2 -1 3312 3180 1107 240 58 27 chr3 34164000 34164398 -183872760 + L1ME3 LINE L1 5738 6143 -21 2737 194 30 13 chr3 34164398 34164955 -183872203 - MLT1F1 LTR MaLR 0 567 1 1107 240 58 27 chr3 34164955 34164976 -183872182 + L1ME3 LINE L1 6143 6162 -2 427 296 155 30 chr3 34165060 34165457 -183871701 - L2 LINE L2 -276 3037 2585 1540 155 8 4 chr3 34166436 34166687 -183870471 - AluSx SINE Alu -28 284 33 283 303 129 19 chr3 34166752 34166907 -183870251 + MIR3 SINE MIR 20 191 -17 451 294 89 24 chr3 34168802 34169026 -183868132 + MIR SINE MIR 14 259 -3 381 290 19 9 chr3 34169029 34169136 -183868022 + L2 LINE L2 3153 3260 -12 730 216 122 0 chr3 34171496 34171677 -183865481 + MER3 DNA MER1_type 2 204 -5 22 0 0 0 chr3 34173810 34173832 -183863326 + AT_rich Low_complexity Low_complexity 1 22 0 278 176 99 12 chr3 34175778 34175938 -183861220 - MER5C DNA MER1_type -42 282 45 237 300 0 0 chr3 34176763 34176823 -183860335 + MIR3 SINE MIR 101 160 -48 2116 100 24 7 chr3 34177235 34177524 -183859634 + AluSq SINE Alu 1 294 -19 2144 134 0 3 chr3 34178013 34178326 -183858832 + AluSx SINE Alu 1 312 0 2080 144 0 13 chr3 34179129 34179442 -183857716 - AluSx SINE Alu -3 309 1 766 309 81 18 chr3 34179530 34179802 -183857356 - LTR16C LTR ERVL -41 450 162 21 0 0 0 chr3 34182085 34182106 -183855052 + AT_rich Low_complexity Low_complexity 1 21 0 1004 254 47 0 chr3 34182686 34182899 -183854259 + MER58A DNA MER1_type 1 223 -1 255 103 0 0 chr3 34183198 34183237 -183853921 + (CAT)n Simple_repeat Simple_repeat 2 40 0 1747 153 10 24 chr3 34183687 34183982 -183853176 - AluJo SINE Alu -16 296 6 811 107 156 0 chr3 34185977 34186099 -183851059 + AluSp/q SINE Alu 157 297 -16 253 252 36 54 chr3 34186311 34186422 -183850736 - L2 LINE L2 -218 3054 2946 395 351 153 8 chr3 34186857 34187125 -183850033 - L2 LINE L2 -856 2458 2152 180 0 0 0 chr3 34187800 34187820 -183849338 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2437 74 3 6 chr3 34187830 34188141 -183849017 - AluY SINE Alu -1 310 1 23 33 0 0 chr3 34188341 34188371 -183848787 + AT_rich Low_complexity Low_complexity 1 30 0 217 253 13 51 chr3 34188815 34188894 -183848264 + MIR3 SINE MIR 123 198 -10 181 311 100 11 chr3 34189252 34189342 -183847816 + MIR SINE MIR 1 98 -164 1968 155 17 3 chr3 34189349 34189646 -183847512 + AluJb SINE Alu 1 301 -11 207 220 0 0 chr3 34189700 34189750 -183847408 - MIR SINE MIR -115 147 98 292 323 81 19 chr3 34189766 34189927 -183847231 + MIR SINE MIR 90 260 -2 26 30 0 0 chr3 34190245 34190278 -183846880 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr3 34190657 34190679 -183846479 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 34191391 34191413 -183845745 + AT_rich Low_complexity Low_complexity 1 22 0 337 246 0 0 chr3 34193749 34193810 -183843348 + tRNA-Lys-AAA tRNA tRNA 5 65 -11 1801 154 14 3 chr3 34197265 34197558 -183839600 - AluJb SINE Alu -16 296 1 2187 126 0 0 chr3 34197722 34198031 -183839127 + AluSx SINE Alu 1 309 -3 201 324 15 0 chr3 34198171 34198239 -183838919 + L2 LINE L2 3241 3309 -4 1991 101 10 7 chr3 34198655 34198943 -183838215 - AluSq SINE Alu -11 302 14 997 113 0 0 chr3 34198960 34199093 -183838065 - AluSp SINE Alu -180 133 1 264 365 122 17 chr3 34201255 34201436 -183835722 + MIR SINE MIR 12 211 -51 969 61 88 218 chr3 34201467 34201728 -183835430 - MER30 DNA MER1_type 0 230 4 30 27 0 0 chr3 34202908 34202945 -183834213 + AT_rich Low_complexity Low_complexity 1 37 0 1254 198 69 116 chr3 34203384 34203802 -183833356 + L1MC5 LINE L1 7233 7669 -292 1598 165 62 7 chr3 34203802 34204093 -183833065 + AluSx SINE Alu 1 307 -5 1254 198 69 116 chr3 34204093 34204208 -183832950 + L1MC5 LINE L1 7669 7647 -314 1864 151 3 3 chr3 34204208 34204492 -183832666 + AluJb SINE Alu 1 284 -28 1254 198 69 116 chr3 34204492 34204678 -183832480 + L1MC5 LINE L1 7646 7839 -122 23 0 0 0 chr3 34206130 34206153 -183831005 + AT_rich Low_complexity Low_complexity 1 23 0 219 294 0 0 chr3 34206274 34206325 -183830833 + (TA)n Simple_repeat Simple_repeat 1 51 0 22 35 0 0 chr3 34206616 34206645 -183830513 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 34207233 34207255 -183829903 + AT_rich Low_complexity Low_complexity 1 22 0 189 74 0 0 chr3 34208982 34209009 -183828149 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1580 253 106 28 chr3 34209054 34209583 -183827575 - MER21B LTR ERV1 -105 758 189 22 70 0 0 chr3 34209647 34209690 -183827468 + AT_rich Low_complexity Low_complexity 1 43 0 1424 276 68 72 chr3 34210287 34211804 -183825354 + L1MCa LINE L1 46 1457 -4851 297 218 64 18 chr3 34211803 34211913 -183825245 + L1MCa LINE L1 2543 2657 -3907 * 1048 164 16 6 chr3 34212420 34212603 -183824555 - MER2 DNA MER2_type -139 206 22 26 50 0 0 chr3 34212802 34212842 -183824316 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chr3 34212867 34212896 -183824262 + AT_rich Low_complexity Low_complexity 1 29 0 195 42 0 0 chr3 34213701 34213725 -183823433 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 333 0 0 0 chr3 34214328 34214365 -183822793 + (A)n Simple_repeat Simple_repeat 1 37 0 342 0 0 0 chr3 34215437 34215475 -183821683 + (A)n Simple_repeat Simple_repeat 1 38 0 261 238 79 101 chr3 34216089 34216316 -183820842 + L1ME4a LINE L1 5724 5945 -176 2260 94 3 0 chr3 34216430 34216728 -183820430 - AluSg SINE Alu -11 299 1 1950 123 23 10 chr3 34217875 34218059 -183819099 - AluJb SINE Alu -7 305 114 212 0 36 0 chr3 34218059 34218087 -183819071 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1950 123 23 10 chr3 34218087 34218203 -183818955 - AluJb SINE Alu -198 114 1 534 277 137 12 chr3 34221248 34221461 -183815697 + MIR SINE MIR 4 238 -24 1876 123 11 0 chr3 34221541 34221810 -183815348 + AluSx SINE Alu 3 274 -38 2138 80 3 51 chr3 34221913 34222226 -183814932 - AluY SINE Alu -13 298 1 2104 118 0 35 chr3 34222872 34223185 -183813973 - AluSx SINE Alu -8 304 3 27 73 0 0 chr3 34224002 34224057 -183813101 + AT_rich Low_complexity Low_complexity 1 55 0 308 254 204 21 chr3 34224957 34225099 -183812059 + L1MB2 LINE L1 413 580 -5723 3092 235 26 38 chr3 34225507 34225691 -183811467 + L1MB2 LINE L1 801 986 -5317 1763 164 3 20 chr3 34225691 34225996 -183811162 + AluJb SINE Alu 1 300 -12 3092 235 26 38 chr3 34225996 34226916 -183810242 + L1MB2 LINE L1 986 1787 -4516 9008 112 9 0 chr3 34226945 34228229 -183808929 - HSMAR2 DNA Mariner 0 1302 7 11044 205 59 16 chr3 34228349 34228700 -183808458 + L1MB2 LINE L1 2030 2364 -4043 2064 125 7 3 chr3 34228700 34228996 -183808162 + AluSx SINE Alu 1 297 -15 11044 205 59 16 chr3 34228996 34230518 -183806640 + L1MB2 LINE L1 2364 3818 -2589 1455 168 3 107 chr3 34230518 34230845 -183806313 - AluJb SINE Alu -9 293 1 11044 205 59 16 chr3 34230845 34233157 -183804001 + L1MB2 LINE L1 3818 6406 -1 488 196 18 36 chr3 34233436 34233548 -183803610 + FLAM_A SINE Alu 4 113 -29 239 79 26 0 chr3 34233552 34233590 -183803568 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2146 72 3 14 chr3 34234895 34235185 -183801973 + AluYa5 SINE Alu 1 287 -24 29 0 0 0 chr3 34235185 34235214 -183801944 + AT_rich Low_complexity Low_complexity 1 29 0 21 95 0 0 chr3 34235556 34235619 -183801539 + AT_rich Low_complexity Low_complexity 1 63 0 4408 215 34 18 chr3 34236348 34237382 -183799776 - L1M2 LINE L1 -5447 1402 353 369 203 14 0 chr3 34237483 34237557 -183799601 + L1MB7 LINE L1 4052 4126 -2020 2954 226 23 22 chr3 34237594 34238329 -183798829 + L1MB7 LINE L1 5442 6177 -7 2559 127 5 24 chr3 34238838 34239257 -183797901 - L1PA15 LINE L1 -5 6160 5750 597 304 100 5 chr3 34240061 34240281 -183796877 - MIR SINE MIR -19 243 3 240 231 264 25 chr3 34240452 34240573 -183796585 + MIR SINE MIR 17 166 -96 309 343 30 42 chr3 34241085 34241251 -183795907 - L2 LINE L2 -242 3030 2867 452 228 101 42 chr3 34241471 34241608 -183795550 + L1MC5 LINE L1 7676 7834 -127 2459 57 7 0 chr3 34241608 34241907 -183795251 - AluSp SINE Alu -11 302 2 452 228 101 42 chr3 34241907 34242006 -183795152 + L1MC5 LINE L1 7834 7926 -35 21 0 0 0 chr3 34242260 34242281 -183794877 + AT_rich Low_complexity Low_complexity 1 21 0 332 276 296 10 chr3 34242720 34242923 -183794235 - MIR SINE MIR 0 262 2 21 0 0 0 chr3 34244780 34244801 -183792357 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 34245536 34245557 -183791601 + GC_rich Low_complexity Low_complexity 1 21 0 208 143 29 0 chr3 34245881 34245916 -183791242 + G-rich Low_complexity Low_complexity 4 39 0 202 229 145 36 chr3 34246491 34246574 -183790584 - L2 LINE L2 -14 3299 3208 2118 116 0 7 chr3 34247198 34247500 -183789658 - AluSx SINE Alu -12 300 1 1862 109 0 0 chr3 34247900 34248147 -183789011 + AluSx SINE Alu 54 300 -12 1779 111 33 0 chr3 34248563 34248806 -183788352 + AluSx SINE Alu 37 287 -25 270 196 0 0 chr3 34250052 34250098 -183787060 + Alu SINE Alu 1 46 -253 215 205 0 0 chr3 34250447 34250486 -183786672 + L2 LINE L2 3263 3301 -12 404 283 103 41 chr3 34250922 34251075 -183786083 - MIR SINE MIR -12 250 74 2153 126 3 3 chr3 34251075 34251376 -183785782 + AluSx SINE Alu 1 301 -11 404 283 103 41 chr3 34251376 34251454 -183785704 - MIR SINE MIR -188 74 2 2117 98 6 44 chr3 34251781 34252097 -183785061 - AluSx SINE Alu -8 304 1 281 173 0 80 chr3 34252555 34252630 -183784528 - MER103 DNA DNA -57 109 41 2105 117 0 0 chr3 34252735 34253008 -183784150 + AluSx SINE Alu 3 275 -37 219 36 0 0 chr3 34253012 34253040 -183784118 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 335 247 22 11 chr3 34253080 34253169 -183783989 - L1ME4a LINE L1 -65 6056 5967 515 245 25 32 chr3 34253219 34253396 -183783762 + L1ME3A LINE L1 5412 5597 -565 333 260 0 0 chr3 34253394 34253471 -183783687 + L1ME3A LINE L1 5561 5637 -533 * 8292 173 63 43 chr3 34253475 34255151 -183782007 - MER52A LTR ERV1 0 1755 47 1191 223 157 54 chr3 34255488 34255787 -183781371 + L1ME3A LINE L1 5619 5886 -284 531 0 0 0 chr3 34255787 34255846 -183781312 + (TA)n Simple_repeat Simple_repeat 1 59 0 2116 118 3 3 chr3 34255848 34256137 -183781021 - AluSq SINE Alu -23 290 2 1191 223 157 54 chr3 34256137 34256331 -183780827 + L1ME3A LINE L1 5886 6165 -5 665 254 63 0 chr3 34256336 34256525 -183780633 + HsTC2 DNA Tc2 1524 1724 -174 249 274 49 10 chr3 34256697 34256799 -183780359 - MIR SINE MIR -10 252 147 792 192 45 98 chr3 34257174 34257398 -183779760 - MER20 DNA MER1_type -7 212 1 549 204 49 35 chr3 34257459 34257601 -183779557 - MIR SINE MIR -103 159 16 346 332 107 11 chr3 34258177 34258364 -183778794 - L2 LINE L2 -1 3312 3108 2088 116 7 3 chr3 34258688 34258982 -183778176 - AluSx SINE Alu -17 295 1 560 124 0 77 chr3 34260068 34260262 -183776896 + (AGGGGG)n Simple_repeat Simple_repeat 2 180 0 23 33 0 0 chr3 34260720 34260750 -183776408 + GC_rich Low_complexity Low_complexity 1 30 0 367 275 19 12 chr3 34260763 34260923 -183776235 + G-rich Low_complexity Low_complexity 2 162 0 245 289 23 16 chr3 34261091 34261219 -183775939 + GA-rich Low_complexity Low_complexity 2 130 0 2607 52 0 0 chr3 34261745 34262054 -183775104 - AluY SINE Alu -2 309 1 201 39 0 0 chr3 34262117 34262143 -183775015 + (CAA)n Simple_repeat Simple_repeat 3 28 0 220 122 0 24 chr3 34262547 34262588 -183774570 + (ATTTG)n Simple_repeat Simple_repeat 4 43 0 278 341 32 24 chr3 34262959 34263082 -183774076 - MIR SINE MIR -119 143 20 810 198 121 13 chr3 34263268 34263425 -183773733 - FAM SINE Alu -1 174 1 268 198 210 12 chr3 34263697 34263778 -183773380 + MER103 DNA DNA 69 165 -1 4416 187 57 11 chr3 34263902 34264256 -183772902 + L1MB8 LINE L1 4350 4686 -1492 2499 60 0 0 chr3 34264256 34264555 -183772603 + AluY SINE Alu 1 299 -12 4416 187 57 11 chr3 34264555 34265955 -183771203 + L1MB8 LINE L1 4686 6172 -6 247 158 0 0 chr3 34267263 34267301 -183769857 - L2 LINE L2 0 3272 3235 507 248 183 0 chr3 34269075 34269212 -183767946 + MER5A DNA MER1_type 27 188 -1 198 103 0 0 chr3 34269440 34269469 -183767689 + (GGGGA)n Simple_repeat Simple_repeat 5 33 0 525 282 152 19 chr3 34269817 34270193 -183766965 + L2 LINE L2 1959 2384 -930 * 880 250 108 60 chr3 34270176 34270430 -183766728 - L2 LINE L2 -5 3308 3068 1458 178 33 23 chr3 34270430 34270734 -183766424 + AluJo SINE Alu 5 311 -1 880 250 108 60 chr3 34270734 34271148 -183766010 - L2 LINE L2 -245 3068 2709 2080 115 7 0 chr3 34271420 34271698 -183765460 - AluSx SINE Alu -16 296 17 206 274 32 0 chr3 34271943 34272005 -183765153 - MIR SINE MIR -64 144 81 250 201 44 11 chr3 34273316 34273390 -183763768 + MIR SINE MIR 36 115 -93 347 24 0 0 chr3 34274006 34274048 -183763110 - L1P4 LINE L1 -643 5531 5490 6534 102 4 22 chr3 34274383 34275878 -183761280 - L1PA12 LINE L1 0 6168 4697 2195 135 0 0 chr3 34275878 34276189 -183760969 + AluY SINE Alu 1 311 0 6534 102 4 22 chr3 34276189 34276403 -183760755 - L1PA12 LINE L1 -1471 4697 4481 1759 155 0 4 chr3 34276438 34276709 -183760449 + AluJb SINE Alu 24 293 -19 192 378 37 0 chr3 34277271 34277353 -183759805 + MIR SINE MIR 54 138 -70 1830 166 7 10 chr3 34277446 34277754 -183759404 - AluJb SINE Alu -5 307 1 21 0 0 0 chr3 34277906 34277927 -183759231 + AT_rich Low_complexity Low_complexity 1 21 0 535 257 139 20 chr3 34278127 34278329 -183758829 - MIR SINE MIR -17 245 20 253 183 0 37 chr3 34278440 34278522 -183758636 + GA-rich Low_complexity Low_complexity 3 81 0 4180 44 0 0 chr3 34279560 34280038 -183757120 - L1PA3 LINE L1 -1 6154 5677 22 0 0 0 chr3 34280050 34280072 -183757086 + AT_rich Low_complexity Low_complexity 1 22 0 479 307 7 0 chr3 34280135 34280288 -183756870 - ERVL LTR ERVL -384 5380 5227 396 371 60 22 chr3 34280328 34280697 -183756461 - ERVL LTR ERVL -636 5128 4746 15839 30 0 0 chr3 34280771 34283389 -183753769 - L1HS LINE L1 0 6155 3538 2105 107 4 0 chr3 34285285 34285593 -183751565 + AluSx SINE Alu 1 309 0 375 249 183 52 chr3 34286078 34286367 -183750791 + L1ME4a LINE L1 5774 6100 -21 25 51 0 0 chr3 34286386 34286425 -183750733 + AT_rich Low_complexity Low_complexity 1 39 0 330 316 101 0 chr3 34286689 34286857 -183750301 - MIR SINE MIR 0 262 78 414 224 60 90 chr3 34287348 34287549 -183749609 + L2 LINE L2 3119 3313 0 198 337 20 20 chr3 34288463 34288561 -183748597 - L2 LINE L2 -1435 1879 1782 267 235 82 24 chr3 34288813 34288898 -183748260 + MIR3 SINE MIR 70 159 -49 247 331 55 50 chr3 34288899 34289080 -183748078 - MER5A DNA MER1_type 0 189 8 279 0 0 0 chr3 34290221 34290252 -183746906 + (T)n Simple_repeat Simple_repeat 1 31 0 774 266 121 35 chr3 34290397 34291090 -183746068 + L1MC4a LINE L1 5174 5398 -748 1731 137 108 4 chr3 34291222 34291499 -183745659 + AluJb SINE Alu 1 306 -6 2136 126 51 46 chr3 34291511 34291694 -183745464 + THE1C LTR MaLR 1 182 -193 2022 102 42 0 chr3 34291694 34291977 -183745181 - AluSx SINE Alu -17 295 1 2136 126 51 46 chr3 34291977 34292166 -183744992 + THE1C LTR MaLR 182 375 0 430 212 62 88 chr3 34293008 34293209 -183743949 - Charlie8 DNA MER1_type -2142 275 89 373 282 92 29 chr3 34293230 34293501 -183743657 + L1MC4a LINE L1 5771 6054 -1754 320 261 114 61 chr3 34293854 34294048 -183743110 + HAL1 LINE L1 851 1062 -1445 2331 52 10 42 chr3 34294048 34294356 -183742802 + AluY SINE Alu 1 298 -13 320 261 114 61 chr3 34294356 34294406 -183742752 + HAL1 LINE L1 1062 1108 -1399 322 211 110 8 chr3 34294482 34294609 -183742549 + L1P5 LINE L1 5332 5468 -686 1241 235 186 20 chr3 34294627 34295083 -183742075 - MLT1F LTR MaLR -10 532 1 369 290 158 6 chr3 34295089 34295323 -183741835 + L1ME LINE L1 5486 5772 -398 344 252 163 8 chr3 34295771 34295894 -183741264 + MIR SINE MIR 118 259 -3 392 281 32 53 chr3 34296369 34296513 -183740645 + MIR3 SINE MIR 56 197 -11 2432 71 0 0 chr3 34297007 34297325 -183739833 + AluY SINE Alu 1 318 0 4329 115 31 0 chr3 34297337 34298024 -183739134 - L1P LINE L1 -1134 5012 4305 6342 91 19 0 chr3 34298024 34299122 -183738036 + L1PA8 LINE L1 5046 6165 -7 719 206 8 0 chr3 34299599 34299730 -183737428 + FLAM_A SINE Alu 1 132 -1 295 261 87 33 chr3 34299881 34299973 -183737185 + L2 LINE L2 3168 3264 -8 23 0 0 0 chr3 34301188 34301211 -183735947 + AT_rich Low_complexity Low_complexity 1 23 0 198 343 0 43 chr3 34302209 34302279 -183734879 + L2 LINE L2 150 216 -3098 1194 181 177 0 chr3 34302418 34302661 -183734497 - AluJo SINE Alu -15 287 2 2483 72 13 0 chr3 34302786 34303093 -183734065 + AluY SINE Alu 1 311 0 2038 142 3 0 chr3 34303251 34303553 -183733605 + AluSx SINE Alu 2 304 -8 180 111 0 0 chr3 34303580 34303607 -183733551 + (TA)n Simple_repeat Simple_repeat 1 27 0 26 0 0 0 chr3 34305059 34305085 -183732073 + AT_rich Low_complexity Low_complexity 1 26 0 265 329 79 61 chr3 34305938 34306166 -183730992 + L2 LINE L2 2824 3055 -217 3318 174 92 90 chr3 34306169 34307070 -183730088 + MER21A LTR ERV1 1 903 -28 354 266 38 76 chr3 34307553 34307711 -183729447 - L2 LINE L2 -7 3306 3155 316 326 127 76 chr3 34308748 34309039 -183728119 + L2 LINE L2 2967 3272 0 203 368 23 11 chr3 34309528 34309615 -183727543 + L2 LINE L2 3210 3297 -16 499 136 11 11 chr3 34309774 34309862 -183727296 + AluSp/q SINE Alu 212 299 -14 2056 148 28 52 chr3 34309864 34309984 -183727174 + L1MA4 LINE L1 4996 5117 -1183 2086 68 79 0 chr3 34309984 34310264 -183726894 - AluY SINE Alu -9 302 1 2056 148 28 52 chr3 34310264 34310500 -183726658 + L1MA4 LINE L1 5117 5357 -943 2076 143 3 7 chr3 34310500 34310808 -183726350 + AluSx SINE Alu 1 307 -5 2056 148 28 52 chr3 34310808 34311142 -183726016 + L1MA4 LINE L1 5357 5667 -633 24 91 0 0 chr3 34311155 34311221 -183725937 + AT_rich Low_complexity Low_complexity 1 66 0 5524 159 39 49 chr3 34311223 34311580 -183725578 - L1PB1 LINE L1 0 6867 6508 2024 127 7 3 chr3 34311580 34311872 -183725286 - AluSq SINE Alu -20 293 1 5524 159 39 49 chr3 34311872 34313738 -183723420 - L1PB1 LINE L1 -359 6508 4681 18130 119 75 9 chr3 34313743 34316828 -183720330 - L1PB1 LINE L1 -3570 3292 1 2004 121 0 7 chr3 34316829 34317135 -183720023 + L1MA4 LINE L1 5662 5965 -335 29 0 0 0 chr3 34317154 34317183 -183719975 + AT_rich Low_complexity Low_complexity 1 29 0 1757 168 12 6 chr3 34317185 34317513 -183719645 + L1MA4 LINE L1 5961 6290 -10 543 208 38 0 chr3 34317710 34317816 -183719342 + MER81 DNA DNA 5 114 0 1138 288 35 19 chr3 34318002 34318374 -183718784 + L2 LINE L2 2211 2588 -726 377 207 35 69 chr3 34318365 34318481 -183718677 - L2 LINE L2 -5 3308 3197 * 360 256 91 80 chr3 34318461 34318637 -183718521 + L2 LINE L2 2569 2746 -568 * 1762 124 23 0 chr3 34318637 34318903 -183718255 + AluSp SINE Alu 1 272 -41 26 0 0 0 chr3 34320183 34320209 -183716949 + AT_rich Low_complexity Low_complexity 1 26 0 768 339 68 26 chr3 34320330 34320778 -183716380 + L2 LINE L2 2590 3063 -209 31 58 0 0 chr3 34320889 34320941 -183716217 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr3 34321824 34321845 -183715313 + AT_rich Low_complexity Low_complexity 1 21 0 2783 226 88 5 chr3 34322026 34322801 -183714357 + L1ME3A LINE L1 5328 6166 -4 23 0 0 0 chr3 34323384 34323407 -183713751 + AT_rich Low_complexity Low_complexity 1 23 0 465 19 0 0 chr3 34324197 34324251 -183712907 + (TG)n Simple_repeat Simple_repeat 2 55 0 22 70 0 0 chr3 34324445 34324488 -183712670 + AT_rich Low_complexity Low_complexity 1 43 0 2057 127 3 10 chr3 34324807 34325099 -183712059 - AluSx SINE Alu -22 290 1 2246 93 7 0 chr3 34325151 34325451 -183711707 + AluSp SINE Alu 1 302 -11 818 126 0 8 chr3 34325451 34325570 -183711588 - AluJo/FLAM SINE Alu -184 118 1 910 210 15 45 chr3 34325970 34326194 -183710964 + AluSg/x SINE Alu 90 307 0 2181 200 86 14 chr3 34326395 34327299 -183709859 + L1ME LINE L1 4850 5800 -366 422 200 55 9 chr3 34327302 34327412 -183709746 + L1MA10 LINE L1 6220 6334 0 856 216 64 8 chr3 34328315 34328551 -183708607 + L1MA4 LINE L1 6052 6300 0 267 252 154 8 chr3 34328564 34328687 -183708471 - MIR SINE MIR -10 252 112 2346 74 0 13 chr3 34329002 34329301 -183707857 - AluSc SINE Alu -14 295 1 870 94 0 55 chr3 34330083 34330211 -183706947 - AluSg/x SINE Alu -16 294 174 22 0 0 0 chr3 34330387 34330409 -183706749 + AT_rich Low_complexity Low_complexity 1 22 0 899 255 42 5 chr3 34330705 34330917 -183706241 - MER58A DNA MER1_type 0 224 5 574 248 157 66 chr3 34332132 34332302 -183704856 + L1ME LINE L1 4457 4610 -1536 2159 127 0 10 chr3 34332302 34332610 -183704548 + AluSx SINE Alu 1 305 -7 574 248 157 66 chr3 34332610 34333169 -183703989 + L1ME LINE L1 4610 5268 -878 2241 83 0 33 chr3 34333169 34333470 -183703688 + AluSq SINE Alu 4 294 -19 574 248 157 66 chr3 34333470 34333541 -183703617 + L1ME LINE L1 5268 5331 -815 471 264 177 15 chr3 34333574 34333839 -183703319 + L1ME LINE L1 5512 5819 -302 766 259 239 28 chr3 34334107 34334262 -183702896 + L2 LINE L2 2656 2777 -536 1470 209 63 73 chr3 34334262 34334770 -183702388 + MLT1D LTR MaLR 2 504 -1 766 259 239 28 chr3 34334770 34335149 -183702009 + L2 LINE L2 2777 3312 -1 831 228 162 84 chr3 34336016 34336490 -183700668 + MLT1J LTR MaLR 1 511 0 739 200 91 11 chr3 34336582 34336757 -183700401 + MER3 DNA MER1_type 4 192 -17 306 152 30 0 chr3 34337910 34337976 -183699182 + L1ME4a LINE L1 6054 6121 0 1534 98 4 27 chr3 34338287 34338512 -183698646 - AluSq SINE Alu -12 301 82 3764 219 42 32 chr3 34339085 34340000 -183697158 + L1MCb LINE L1 19 942 -5103 452 244 92 8 chr3 34340027 34340158 -183697000 - MIR SINE MIR -109 153 12 2808 167 12 14 chr3 34340378 34340894 -183696264 + L1MB3 LINE L1 5317 5831 -352 1644 155 81 20 chr3 34341412 34341450 -183695708 + L1MB3 LINE L1 5814 5848 -335 1786 142 70 25 chr3 34341450 34341809 -183695349 - THE1C LTR MaLR 0 375 1 1644 155 81 20 chr3 34341809 34342118 -183695040 + L1MB3 LINE L1 5848 6182 -1 1341 170 72 0 chr3 34342262 34342485 -183694673 + MER8 DNA MER2_type 1 239 0 23 0 0 0 chr3 34342768 34342791 -183694367 + AT_rich Low_complexity Low_complexity 1 23 0 2190 120 3 0 chr3 34343669 34343977 -183693181 - AluSg SINE Alu -1 309 1 1192 201 8 26 chr3 34344017 34344251 -183692907 + AluJo SINE Alu 34 263 -49 207 91 23 45 chr3 34344261 34344305 -183692853 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 404 296 40 33 chr3 34344387 34344539 -183692619 + HAL1 LINE L1 1169 1321 -1186 366 290 39 21 chr3 34344543 34344810 -183692348 + HAL1 LINE L1 1364 1651 -856 21 0 0 0 chr3 34344893 34344914 -183692244 + AT_rich Low_complexity Low_complexity 1 21 0 375 270 135 22 chr3 34345156 34345334 -183691824 + L1M4c LINE L1 2234 2431 -3953 266 286 104 0 chr3 34345343 34345420 -183691738 - L2 LINE L2 -11 3261 3177 190 333 159 0 chr3 34345472 34345598 -183691560 - L2 LINE L2 -3 3310 3165 420 312 176 39 chr3 34345762 34346242 -183690916 - L2 LINE L2 -263 3009 2455 180 269 183 54 chr3 34348141 34348327 -183688831 - L3 LINE CR1 -1044 533 324 414 291 99 29 chr3 34348756 34348928 -183688230 + MIR SINE MIR 37 220 -42 1068 245 133 37 chr3 34349178 34349725 -183687433 + Charlie7 DNA MER1_type 33 632 -1980 1754 172 3 10 chr3 34349755 34350051 -183687107 + AluJo SINE Alu 5 298 -14 291 217 36 58 chr3 34350098 34350236 -183686922 + Charlie7 DNA MER1_type 2477 2611 -1 193 319 64 32 chr3 34350372 34350466 -183686692 + MER5A DNA MER1_type 40 136 -53 243 0 0 0 chr3 34351375 34351402 -183685756 + (CA)n Simple_repeat Simple_repeat 2 28 0 310 217 80 40 chr3 34351562 34351737 -183685421 - L1ME4a LINE L1 -4 6117 5936 2583 64 3 0 chr3 34352036 34352348 -183684810 + AluSp SINE Alu 1 313 0 2305 200 36 0 chr3 34352980 34353501 -183683657 + L1MB7 LINE L1 5406 5945 -239 2067 131 3 7 chr3 34354175 34354480 -183682678 + AluSq SINE Alu 1 304 -9 1015 172 11 11 chr3 34354480 34354656 -183682502 + AluSc SINE Alu 131 309 0 22 0 0 0 chr3 34355820 34355842 -183681316 + AT_rich Low_complexity Low_complexity 1 22 0 2212 108 20 0 chr3 34356682 34356978 -183680180 + AluSx SINE Alu 1 302 -10 440 291 168 14 chr3 34357200 34357248 -183679910 - MIR SINE MIR -4 258 219 1554 141 27 23 chr3 34357248 34357511 -183679647 - AluJo SINE Alu -19 293 30 440 291 168 14 chr3 34357511 34357573 -183679585 - MIR SINE MIR -43 219 168 2267 107 0 3 chr3 34357573 34357871 -183679287 - AluSq SINE Alu -16 297 1 440 291 168 14 chr3 34357871 34357979 -183679179 - MIR SINE MIR -94 168 5 2358 107 0 0 chr3 34358516 34358825 -183678333 + AluSg SINE Alu 1 309 -1 248 280 43 0 chr3 34358878 34358971 -183678187 - MER20B DNA MER1_type -641 142 46 456 165 0 33 chr3 34359242 34359333 -183677825 + L1 LINE L1 4915 5002 -1144 2236 95 10 10 chr3 34359335 34359641 -183677517 + AluSx SINE Alu 1 306 -6 1412 92 0 46 chr3 34359645 34359862 -183677296 + AluSq SINE Alu 1 207 -106 709 270 140 39 chr3 34360094 34360523 -183676635 + L2 LINE L2 2736 3271 -42 2246 105 3 13 chr3 34361601 34361916 -183675242 - AluSx SINE Alu 0 312 1 319 257 0 0 chr3 34362187 34362261 -183674897 + MER117 DNA MER1_type 47 120 -77 373 239 255 23 chr3 34362557 34362816 -183674342 + MER5C DNA MER1_type 4 322 -2 242 275 143 0 chr3 34362876 34362967 -183674191 - MER20 DNA MER1_type -1 218 115 1110 156 33 19 chr3 34363300 34363511 -183673647 - AluJo SINE Alu -13 299 86 1587 158 95 7 chr3 34363654 34363927 -183673231 - AluJo SINE Alu -13 299 3 649 100 30 0 chr3 34364286 34364386 -183672772 + AluSp/q SINE Alu 192 294 -19 23 0 0 0 chr3 34365388 34365411 -183671747 + AT_rich Low_complexity Low_complexity 1 23 0 528 288 104 107 chr3 34365744 34366531 -183670627 - L1M2 LINE L1 -5626 1223 439 306 217 30 131 chr3 34366923 34367121 -183670037 - MER112 DNA MER1_type -7 253 76 227 211 0 0 chr3 34367515 34367567 -183669591 - MLT1J1 LTR MaLR -42 404 353 765 182 62 23 chr3 34367627 34367803 -183669355 - MER58A DNA MER1_type 0 224 42 216 0 0 0 chr3 34367813 34367837 -183669321 + (A)n Simple_repeat Simple_repeat 1 24 0 25 0 0 0 chr3 34367959 34367984 -183669174 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr3 34368199 34368227 -183668931 + AT_rich Low_complexity Low_complexity 1 28 0 974 113 0 0 chr3 34368229 34368362 -183668796 + FLAM_C SINE Alu 1 133 0 1128 133 0 12 chr3 34368849 34369015 -183668143 + AluSg/x SINE Alu 132 295 -15 240 226 0 0 chr3 34369576 34369629 -183667529 - L2 LINE L2 0 3313 3261 639 218 170 0 chr3 34369680 34369827 -183667331 + MER5A DNA MER1_type 17 188 -1 234 386 0 26 chr3 34370057 34370210 -183666948 + L2 LINE L2 2626 2774 -540 270 347 94 50 chr3 34370406 34370814 -183666344 + L2 LINE L2 2772 3186 -86 404 91 15 0 chr3 34371976 34372042 -183665116 - MER41B LTR ERV1 -88 547 481 266 287 56 28 chr3 34372241 34372384 -183664774 - L1ME LINE L1 -272 5849 5703 253 320 0 0 chr3 34372700 34372778 -183664380 + (CG)n Simple_repeat Simple_repeat 1 78 0 230 308 13 58 chr3 34373041 34373197 -183663961 - MIR3 SINE MIR -37 171 23 209 154 0 0 chr3 34375130 34375169 -183661989 - MER5A DNA MER1_type -83 106 68 964 171 73 24 chr3 34375169 34375374 -183661784 - AluJo SINE Alu -12 300 86 266 196 143 0 chr3 34375375 34375431 -183661727 - MER5A DNA MER1_type -113 76 13 972 176 83 10 chr3 34375565 34375770 -183661388 - MER58A DNA MER1_type -3 221 2 842 107 0 57 chr3 34375786 34375971 -183661187 - FLAM_C SINE Alu 0 177 1 220 205 0 0 chr3 34376106 34376145 -183661013 + (CATA)n Simple_repeat Simple_repeat 2 40 0 945 201 15 25 chr3 34377264 34377468 -183659690 - MER20 DNA MER1_type -1 218 17 213 333 251 14 chr3 34377664 34377871 -183659287 - L3 LINE CR1 -1012 565 310 502 277 158 47 chr3 34378011 34378372 -183658786 + LTR16C LTR ERVL 89 489 -2 196 362 43 0 chr3 34378597 34378691 -183658467 - L2 LINE L2 0 3313 3216 * 331 267 99 61 chr3 34378676 34378807 -183658351 - L2 LINE L2 -218 3054 2919 1574 185 83 43 chr3 34378949 34379542 -183657616 + MLT2F LTR ERVL 1 663 0 389 306 56 12 chr3 34379551 34379711 -183657447 - L2 LINE L2 -569 2745 2579 1121 204 84 35 chr3 34379772 34380116 -183657042 - L1ME1 LINE L1 -5 6161 5801 2286 99 3 0 chr3 34380131 34380425 -183656733 - AluSq SINE Alu -18 295 1 915 261 100 16 chr3 34380853 34381163 -183655995 - LTR16B LTR ERVL 0 464 129 489 317 39 32 chr3 34381220 34381785 -183655373 - HERV16 LTR ERVL -5 5320 4756 815 341 48 26 chr3 34381901 34382923 -183654235 - HERV16 LTR ERVL -828 4826 3722 202 214 0 0 chr3 34382940 34382982 -183654176 - L2 LINE L2 -775 2539 2498 450 261 29 36 chr3 34383025 34383163 -183653995 + L2 LINE L2 3177 3313 0 1009 321 134 29 chr3 34383165 34383795 -183653363 + L2 LINE L2 2403 3104 -209 203 275 8 150 chr3 34384075 34384195 -183652963 + L2 LINE L2 3175 3277 -36 211 225 0 0 chr3 34384196 34384236 -183652922 + (CATATA)n Simple_repeat Simple_repeat 4 43 0 733 157 0 30 chr3 34384597 34384731 -183652427 - MER58B DNA MER1_type -15 326 197 717 319 19 5 chr3 34384954 34385167 -183651991 - MIR SINE MIR -30 232 17 28 0 0 0 chr3 34385460 34385488 -183651670 + AT_rich Low_complexity Low_complexity 1 28 0 204 125 0 0 chr3 34386211 34386243 -183650915 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2177 123 0 0 chr3 34386262 34386546 -183650612 - AluSg SINE Alu -15 295 12 281 309 166 22 chr3 34386619 34386800 -183650358 + L3b LINE CR1 1374 1580 -3 703 227 13 7 chr3 34387274 34387424 -183649734 + MIR SINE MIR 9 159 -103 2897 60 4 114 chr3 34387425 34387907 -183649251 - MLT2A1 LTR ERVL -2 442 14 471 198 30 0 chr3 34387913 34388014 -183649144 + MIR SINE MIR 154 257 -5 426 212 76 0 chr3 34388158 34388276 -183648882 - L1MC5 LINE L1 -124 7837 7711 261 242 147 26 chr3 34388583 34388773 -183648385 + LTR48 LTR ERV1 524 736 -51 686 219 7 0 chr3 34388829 34388966 -183648192 + MER58B DNA MER1_type 194 331 -10 391 243 106 97 chr3 34389067 34389204 -183647954 - L1MC5 LINE L1 -266 7695 7561 1539 195 26 19 chr3 34389204 34389512 -183647646 + AluJo SINE Alu 1 310 -2 391 243 106 97 chr3 34389512 34389640 -183647518 - L1MC5 LINE L1 -400 7561 7436 2333 85 0 7 chr3 34389640 34389945 -183647213 + AluY SINE Alu 1 303 -8 391 243 106 97 chr3 34389945 34390151 -183647007 - L1MC5 LINE L1 -525 7436 7219 1076 268 73 77 chr3 34390343 34390362 -183646796 + L2 LINE L2 2524 2542 -771 2135 103 4 0 chr3 34390362 34390684 -183646474 + AluSg SINE Alu 1 323 0 1076 268 73 77 chr3 34390684 34390870 -183646288 + L2 LINE L2 2542 2727 -586 2022 93 7 21 chr3 34390870 34391176 -183645982 + AluSg1 SINE Alu 5 306 0 1076 268 73 77 chr3 34391176 34391477 -183645681 + L2 LINE L2 2727 3025 -288 2134 120 3 3 chr3 34391477 34391786 -183645372 + AluSx SINE Alu 1 309 -3 1076 268 73 77 chr3 34391786 34392072 -183645086 + L2 LINE L2 3025 3311 -2 675 288 28 19 chr3 34392189 34392404 -183644754 - MIR SINE MIR -32 230 14 348 269 144 0 chr3 34392467 34392571 -183644587 - L2 LINE L2 0 3313 3195 323 244 181 55 chr3 34392795 34392922 -183644236 - MIR SINE MIR -113 149 7 210 300 180 35 chr3 34393433 34393574 -183643584 + MIR SINE MIR 14 170 -57 210 254 15 60 chr3 34393579 34393646 -183643512 - L2 LINE L2 0 3313 3250 193 188 47 62 chr3 34394242 34394306 -183642852 - MIR SINE MIR -84 178 116 387 0 0 0 chr3 34394417 34394460 -183642698 + (CA)n Simple_repeat Simple_repeat 2 44 0 268 233 89 33 chr3 34394672 34394762 -183642396 - MLT1I LTR MaLR -39 370 276 253 238 36 36 chr3 34394841 34394925 -183642233 - MLT1I LTR MaLR -266 143 60 1091 254 35 16 chr3 34395221 34395477 -183641681 + MLT1H LTR MaLR 62 322 -227 3471 118 7 61 chr3 34395648 34395717 -183641441 - L1PA16 LINE L1 0 6166 6095 2318 56 32 0 chr3 34395717 34396002 -183641156 - AluY SINE Alu -17 294 1 3471 118 7 61 chr3 34396002 34396436 -183640722 - L1PA16 LINE L1 -71 6095 5695 1744 119 58 51 chr3 34396436 34396590 -183640568 - AluSx SINE Alu -16 296 138 2184 125 3 6 chr3 34396590 34396901 -183640257 - AluSx SINE Alu -2 310 1 1744 119 58 51 chr3 34396901 34397040 -183640118 - AluSx SINE Alu -174 138 1 3471 118 7 61 chr3 34397040 34397110 -183640048 - L1PA16 LINE L1 -471 5695 5623 4190 153 20 4 chr3 34397110 34398121 -183639037 + L1P4 LINE L1 4556 5577 -589 849 215 6 25 chr3 34398122 34398285 -183638873 - FRAM SINE Alu -16 160 1 5064 160 40 6 chr3 34398343 34399142 -183638016 + LTR1B LTR ERV1 1 826 0 472 243 0 19 chr3 34400594 34400701 -183636457 + L2 LINE L2 3208 3312 -1 583 234 45 45 chr3 34401059 34401260 -183635898 - L2 LINE L2 -965 2349 2149 457 281 144 19 chr3 34401271 34401431 -183635727 - MER5A DNA MER1_type -6 183 4 228 341 219 25 chr3 34401431 34402277 -183634881 - L2 LINE L2 -1161 2153 1142 1267 161 22 65 chr3 34402548 34402871 -183634287 + MER33 DNA MER1_type 6 314 -10 658 270 36 24 chr3 34453156 34453555 -183583603 + MLT1G1 LTR MaLR 100 595 0 616 183 32 97 chr3 34453854 34454040 -183583118 - MER5B DNA MER1_type -3 175 2 1469 248 41 13 chr3 34454594 34455057 -183582101 - LTR33 LTR ERVL -45 476 1 2570 299 104 14 chr3 34455060 34456085 -183581073 - L2 LINE L2 -1864 1450 333 734 288 38 29 chr3 34456100 34456340 -183580818 - MIR SINE MIR -16 246 5 413 280 185 12 chr3 34456358 34456601 -183580557 - L2 LINE L2 -2998 316 32 207 0 0 0 chr3 34456728 34456751 -183580407 + (T)n Simple_repeat Simple_repeat 1 23 0 33 43 0 0 chr3 34456777 34456824 -183580334 + AT_rich Low_complexity Low_complexity 1 47 0 385 329 64 21 chr3 34458174 34458314 -183578844 + L2 LINE L2 3168 3313 0 632 258 102 48 chr3 34459161 34459559 -183577599 - MLT1G LTR MaLR -107 460 22 1617 167 69 28 chr3 34459592 34459952 -183577206 + THE1C LTR MaLR 1 375 0 2072 128 3 10 chr3 34460662 34460968 -183576190 - AluSx SINE Alu -8 304 1 693 300 4 11 chr3 34460983 34461243 -183575915 - MIR SINE MIR -1 261 4 604 197 45 15 chr3 34461565 34461697 -183575461 - L2 LINE L2 -1272 2042 1907 832 238 71 10 chr3 34461852 34462098 -183575060 + MIR SINE MIR 10 262 0 425 78 0 0 chr3 34462636 34462700 -183574458 - L1P LINE L1 -780 5392 5329 921 278 65 57 chr3 34463483 34463993 -183573165 + MLT2B3 LTR ERVL 1 514 -40 211 277 0 0 chr3 34464282 34464329 -183572829 + CT-rich Low_complexity Low_complexity 2 48 0 618 175 51 120 chr3 34464330 34464517 -183572641 + MLT1A2 LTR MaLR 173 345 -29 459 0 0 0 chr3 34464517 34464568 -183572590 + (TG)n Simple_repeat Simple_repeat 2 52 0 618 175 51 120 chr3 34464568 34464597 -183572561 + MLT1A2 LTR MaLR 345 374 0 884 280 65 38 chr3 34465276 34465647 -183571511 + LTR16C LTR ERVL 81 461 -30 2164 178 78 59 chr3 34465827 34466366 -183570792 + MER44D DNA MER2_type 2 605 0 797 229 116 51 chr3 34467033 34467325 -183569833 - LTR16C LTR ERVL 0 491 181 1316 284 57 5 chr3 34467328 34467751 -183569407 + LTR16A LTR ERVL 1 445 -5 344 377 106 33 chr3 34468185 34468636 -183568522 + L2 LINE L2 2474 2957 -357 363 381 45 6 chr3 34468721 34468897 -183568261 - MIR3 SINE MIR -9 199 17 523 235 41 18 chr3 34469157 34469327 -183567831 - MER104 DNA MER2_type -3 177 4 247 294 174 0 chr3 34469476 34469568 -183567590 - L2 LINE L2 -1 3271 3164 981 287 13 4 chr3 34469865 34470102 -183567056 + MIR SINE MIR 3 241 -21 339 345 111 13 chr3 34470181 34470407 -183566751 + MIR SINE MIR 15 262 0 1119 269 18 26 chr3 34471740 34472082 -183565076 + MLT1H LTR MaLR 6 344 -205 243 227 15 15 chr3 34472356 34472422 -183564736 + MLT1J2 LTR MaLR 77 142 -308 1889 217 92 28 chr3 34472480 34473321 -183563837 + L1MB8 LINE L1 5122 6011 -167 290 183 125 33 chr3 34473334 34473454 -183563704 + THE1C LTR MaLR 19 149 -226 432 310 6 19 chr3 34476090 34476248 -183560910 - MLT1H LTR MaLR -339 210 55 1055 225 121 114 chr3 34476392 34476979 -183560179 - MLT1E LTR MaLR -2 591 1 299 353 8 16 chr3 34477632 34477754 -183559404 + L2 LINE L2 2939 3059 -213 435 210 81 16 chr3 34478628 34478752 -183558406 - LTR67 LTR ERVL -4 553 422 569 312 93 29 chr3 34478803 34479082 -183558076 - ERVL LTR ERVL -1338 4426 4130 320 259 65 29 chr3 34479480 34479619 -183557539 + MLT1I LTR MaLR 232 375 -34 348 324 11 27 chr3 34479767 34479952 -183557206 - ERVL LTR ERVL -1995 3659 3478 290 162 14 0 chr3 34479952 34480026 -183557132 + CT-rich Low_complexity Low_complexity 2 76 0 293 299 0 0 chr3 34480333 34480420 -183556738 - ERVL LTR ERVL -2444 3210 3124 344 362 51 6 chr3 34480495 34480672 -183556486 - ERVL LTR ERVL -1967 3029 2845 400 331 18 18 chr3 34482529 34482695 -183554463 + HAL1 LINE L1 2237 2402 -105 30 59 0 0 chr3 34482735 34482786 -183554372 + AT_rich Low_complexity Low_complexity 1 51 0 4480 218 25 51 chr3 34483103 34484388 -183552770 + L1M4 LINE L1 22 1272 -5270 707 151 50 0 chr3 34485404 34485523 -183551635 - FLAM_C SINE Alu -7 136 12 1771 201 11 72 chr3 34487127 34487518 -183549640 - L1MB1 LINE L1 -15 6174 5760 243 0 0 0 chr3 34487518 34487545 -183549613 + (TG)n Simple_repeat Simple_repeat 2 28 0 191 61 30 0 chr3 34487555 34487588 -183549570 + (TA)n Simple_repeat Simple_repeat 1 34 0 1771 201 11 72 chr3 34487588 34488127 -183549031 - L1MB1 LINE L1 -438 5751 5298 298 185 0 0 chr3 34489036 34489090 -183548068 + Charlie8 DNA MER1_type 138 191 -2226 632 200 137 37 chr3 34489104 34489294 -183547864 - MER3 DNA MER1_type 0 209 1 2353 164 51 26 chr3 34489549 34490042 -183547116 - MLT1D LTR MaLR 0 505 1 2248 92 0 7 chr3 34490516 34490809 -183546349 - AluSx SINE Alu -11 301 11 1834 150 55 65 chr3 34491279 34491678 -183545480 + MLT2C1 LTR ERVL 3 397 0 1627 145 3 48 chr3 34492064 34492436 -183544722 - THE1B LTR MaLR -9 355 1 1024 225 31 56 chr3 34492436 34492757 -183544401 + MER110A LTR ERV1 156 468 0 21 0 0 0 chr3 34493219 34493240 -183543918 + AT_rich Low_complexity Low_complexity 1 21 0 384 22 0 0 chr3 34493833 34493878 -183543280 + (CA)n Simple_repeat Simple_repeat 1 45 0 908 165 163 60 chr3 34494341 34494406 -183542752 - LTR37A LTR ERV1 -1 425 368 2301 80 10 3 chr3 34494406 34494708 -183542450 + AluY SINE Alu 1 304 -7 908 165 163 60 chr3 34494708 34495023 -183542135 - LTR37A LTR ERV1 -58 368 6 924 268 138 10 chr3 34495141 34495541 -183541617 + LTR33 LTR ERVL 4 454 -67 1896 145 142 36 chr3 34495718 34496105 -183541053 - MSTA LTR MaLR 0 428 1 384 256 26 89 chr3 34496734 34496925 -183540233 - MLT1I LTR MaLR -8 401 223 302 260 14 0 chr3 34496970 34497043 -183540115 - MLT1I LTR MaLR -335 74 1 320 233 8 0 chr3 34497443 34497563 -183539595 + CT-rich Low_complexity Low_complexity 4 124 0 456 242 150 33 chr3 34499032 34499185 -183537973 + MLT1J2 LTR MaLR 189 359 -91 1600 201 3 3 chr3 34499575 34499863 -183537295 + AluJo SINE Alu 5 292 -20 235 261 22 120 chr3 34500180 34500272 -183536886 + L2 LINE L2 3182 3264 -8 277 395 0 0 chr3 34500379 34500508 -183536650 + L2 LINE L2 2224 2352 -962 1013 217 38 5 chr3 34501324 34501536 -183535622 + MER58A DNA MER1_type 2 220 -4 256 372 122 6 chr3 34502053 34502217 -183534941 - MIR SINE MIR -62 200 18 755 185 73 0 chr3 34502373 34502524 -183534634 + Charlie1 DNA MER1_type 66 227 -2534 352 235 43 9 chr3 34502522 34502637 -183534521 + Charlie1 DNA MER1_type 2631 2749 -12 * 292 319 80 65 chr3 34502687 34502825 -183534333 + MIR SINE MIR 37 176 -86 1773 239 81 64 chr3 34503093 34503874 -183533284 - L1ME3A LINE L1 -121 6049 5256 327 191 0 16 chr3 34504491 34504554 -183532604 - MER5B DNA MER1_type -3 175 114 6505 189 41 21 chr3 34504575 34507044 -183530114 - L1PA16 LINE L1 -3 6163 3650 * 6576 256 16 12 chr3 34507040 34508962 -183528196 + L1PA16 LINE L1 1719 3647 -2499 311 132 19 0 chr3 34508963 34509016 -183528142 + MER5B DNA MER1_type 125 178 0 217 225 14 56 chr3 34509254 34509325 -183527833 + CT-rich Low_complexity Low_complexity 5 72 0 1520 189 7 39 chr3 34509327 34509633 -183527525 - AluJo SINE Alu -4 308 13 264 300 42 42 chr3 34510193 34510383 -183526775 + L1ME4a LINE L1 5643 5832 -289 393 209 395 0 chr3 34510658 34510792 -183526366 + MER5A DNA MER1_type 3 189 0 189 0 0 0 chr3 34511031 34511052 -183526106 + (TC)n Simple_repeat Simple_repeat 2 22 0 2183 108 3 0 chr3 34511052 34511340 -183525818 - AluSg SINE Alu -17 293 5 1378 197 123 55 chr3 34512415 34512678 -183524480 - MSTD LTR MaLR -6 390 94 1965 135 24 0 chr3 34512678 34512974 -183524184 - AluSg SINE Alu -6 304 2 1378 197 123 55 chr3 34512974 34513075 -183524083 - MSTD LTR MaLR -302 94 1 28 29 0 0 chr3 34513097 34513132 -183524026 + AT_rich Low_complexity Low_complexity 1 35 0 253 349 32 8 chr3 34513534 34513660 -183523498 + MIR SINE MIR 59 187 -75 669 288 68 17 chr3 34513724 34513960 -183523198 + MIR SINE MIR 15 262 0 6907 147 33 10 chr3 34514124 34514771 -183522387 - Tigger1 DNA MER2_type 0 2418 1731 2270 93 3 3 chr3 34514771 34515072 -183522086 - AluY SINE Alu -8 303 3 6907 147 33 10 chr3 34515072 34515590 -183521568 - Tigger1 DNA MER2_type -687 1731 1226 251 191 0 0 chr3 34515690 34515737 -183521421 - Tigger1 DNA MER2_type -1211 1207 1161 1912 190 30 28 chr3 34515743 34516138 -183521020 - Tigger1 DNA MER2_type -2021 397 2 324 215 91 25 chr3 34516432 34516553 -183520605 + L1ME4a LINE L1 5955 6083 -38 332 336 20 27 chr3 34516663 34516812 -183520346 - MIR3 SINE MIR -23 185 38 182 295 16 101 chr3 34517552 34517681 -183519477 + MIR SINE MIR 29 146 -116 21 36 0 0 chr3 34517931 34517959 -183519199 + AT_rich Low_complexity Low_complexity 1 28 0 31210 108 20 60 chr3 34518949 34525367 -183511791 + L1PA7 LINE L1 13 6152 -2 784 117 37 6 chr3 34525521 34525684 -183511474 - L1MA7 LINE L1 0 6291 6124 699 244 19 73 chr3 34527081 34527286 -183509872 - MER20 DNA MER1_type 0 219 26 1224 315 46 13 chr3 34527831 34528221 -183508937 + LTR16A LTR ERVL 16 418 -32 996 319 69 7 chr3 34528515 34528950 -183508208 + MLT1J LTR MaLR 17 478 -33 199 239 25 25 chr3 34529543 34529630 -183507528 + CT-rich Low_complexity Low_complexity 5 94 -69 745 156 0 57 chr3 34529630 34529771 -183507387 - FLAM_A SINE Alu 0 133 1 199 239 25 25 chr3 34529771 34529842 -183507316 + CT-rich Low_complexity Low_complexity 93 163 0 1908 243 32 41 chr3 34530137 34530796 -183506362 - L1ME3A LINE L1 -196 5974 5322 22 35 0 0 chr3 34530812 34530841 -183506317 + AT_rich Low_complexity Low_complexity 1 29 0 329 289 149 0 chr3 34531072 34531193 -183505965 - MIR SINE MIR -74 188 50 1234 219 23 17 chr3 34531250 34531552 -183505606 - AluJo SINE Alu -6 306 3 251 315 94 8 chr3 34531553 34531680 -183505478 - MIR SINE MIR -91 171 34 3123 138 15 81 chr3 34531691 34531784 -183505374 - LTR9 LTR ERV1 -38 574 476 2469 59 0 34 chr3 34531784 34532106 -183505052 + AluY SINE Alu 1 311 0 3123 138 15 81 chr3 34532106 34532627 -183504531 - LTR9 LTR ERV1 -136 476 1 846 78 0 0 chr3 34533127 34533242 -183503916 + (TTCC)n Simple_repeat Simple_repeat 1 115 0 335 264 11 0 chr3 34534153 34534240 -183502918 + LTR16C LTR ERVL 404 491 0 1385 239 70 4 chr3 34535009 34535469 -183501689 - L1M4 LINE L1 -2964 3182 2693 21 0 0 0 chr3 34535484 34535505 -183501653 + AT_rich Low_complexity Low_complexity 1 21 0 1088 287 81 50 chr3 34535513 34536008 -183501150 - LTR33 LTR ERVL -7 514 5 680 341 16 11 chr3 34536198 34536576 -183500582 - ERVL LTR ERVL -390 5374 4995 314 256 23 12 chr3 34538396 34538482 -183498676 + MIR SINE MIR 5 91 -171 1306 145 98 0 chr3 34538690 34538904 -183498254 - MER2 DNA MER2_type -110 235 1 1023 314 48 10 chr3 34539402 34539714 -183497444 + LTR33 LTR ERVL 1 324 -197 428 269 0 0 chr3 34539749 34539842 -183497316 + MER69 DNA AcHobo 11 103 -1123 24 0 0 0 chr3 34540413 34540437 -183496721 + AT_rich Low_complexity Low_complexity 1 24 0 464 219 69 105 chr3 34540437 34540583 -183496575 - HAL1 LINE L1 -3 2504 2354 1618 186 61 0 chr3 34540583 34540910 -183496248 - MER7A DNA MER2_type -1 345 1 464 219 69 105 chr3 34540910 34540929 -183496229 - HAL1 LINE L1 -153 2354 2336 405 0 0 0 chr3 34540929 34540974 -183496184 + (TG)n Simple_repeat Simple_repeat 1 45 0 234 0 0 0 chr3 34540973 34540999 -183496159 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 464 219 69 105 chr3 34540974 34541138 -183496020 - HAL1 LINE L1 -171 2336 2210 202 263 0 0 chr3 34541420 34541458 -183495700 - L2 LINE L2 -18 3295 3258 408 343 77 34 chr3 34541497 34541850 -183495308 - MLT1K LTR MaLR -10 578 211 181 317 171 0 chr3 34541964 34542046 -183495112 - MIR SINE MIR -88 174 79 1045 264 91 14 chr3 34542469 34542765 -183494393 + LTR16C LTR ERVL 159 477 -14 562 287 124 0 chr3 34542977 34543186 -183493972 + MIR SINE MIR 23 257 -5 22 0 0 0 chr3 34543270 34543292 -183493866 + AT_rich Low_complexity Low_complexity 1 22 0 181 283 38 19 chr3 34543893 34543946 -183493212 + MER5A DNA MER1_type 1 54 -135 291 314 121 29 chr3 34544357 34544564 -183492594 + L2 LINE L2 3084 3309 -4 625 233 135 10 chr3 34544976 34545169 -183491989 - L2 LINE L2 -3 3310 3094 2453 238 153 12 chr3 34545213 34546045 -183491113 - L2 LINE L2 -669 2645 1697 399 169 0 12 chr3 34546674 34546757 -183490401 - L1MA5A LINE L1 0 6297 6216 1240 100 0 0 chr3 34546757 34546917 -183490241 - AluSq SINE Alu -153 160 1 22 0 0 0 chr3 34547158 34547180 -183489978 + AT_rich Low_complexity Low_complexity 1 22 0 311 333 100 8 chr3 34547356 34547476 -183489682 + MER5A DNA MER1_type 55 185 -4 22 56 0 0 chr3 34547814 34547850 -183489308 + AT_rich Low_complexity Low_complexity 1 36 0 2093 125 3 0 chr3 34548493 34548780 -183488378 + AluSg SINE Alu 1 288 -22 938 285 231 19 chr3 34549059 34549543 -183487615 + L2 LINE L2 738 1324 -1990 812 234 51 81 chr3 34549640 34550034 -183487124 - MLT1J LTR MaLR -129 382 1 474 256 53 0 chr3 34550036 34550169 -183486989 + L2 LINE L2 1324 1463 -1851 2155 300 174 17 chr3 34550172 34551454 -183485704 + L2 LINE L2 1711 2791 -522 2306 90 3 0 chr3 34551454 34551753 -183485405 - AluY SINE Alu -10 301 2 2240 115 3 0 chr3 34551754 34552050 -183485108 - AluSp SINE Alu -16 297 1 2155 300 174 17 chr3 34552050 34552145 -183485013 + L2 LINE L2 2790 3304 -9 1770 175 80 13 chr3 34553145 34553497 -183483661 + MLT2D LTR ERVL 1 383 -31 414 0 0 0 chr3 34553497 34553543 -183483615 + (CA)n Simple_repeat Simple_repeat 2 47 0 1770 175 80 13 chr3 34553543 34553578 -183483580 + MLT2D LTR ERVL 383 414 0 2197 71 48 0 chr3 34553972 34554267 -183482891 - AluY SINE Alu -2 309 1 183 256 26 0 chr3 34554882 34554921 -183482237 + L2 LINE L2 2586 2625 -689 596 279 109 62 chr3 34554996 34555416 -183481742 + LTR16A LTR ERVL 8 447 -3 261 176 39 0 chr3 34555485 34555536 -183481622 + L2 LINE L2 3209 3261 -11 760 318 65 22 chr3 34556069 34556393 -183480765 + MLT1K LTR MaLR 85 422 -166 365 316 58 73 chr3 34556506 34556848 -183480310 + L2 LINE L2 2935 3271 -1 279 270 9 61 chr3 34558718 34558833 -183478325 + MIR SINE MIR 104 212 -50 550 325 74 28 chr3 34559020 34559383 -183477775 + LTR16C LTR ERVL 96 475 -16 275 214 126 39 chr3 34559869 34559972 -183477186 + L2 LINE L2 3161 3272 0 279 311 87 16 chr3 34560172 34560355 -183476803 + MIR SINE MIR 17 212 -50 1173 260 23 41 chr3 34561238 34561715 -183475443 + MLT1H LTR MaLR 15 545 -4 263 178 0 0 chr3 34564100 34564145 -183473013 - MLT1L LTR MaLR -223 392 348 300 322 34 11 chr3 34564456 34564633 -183472525 + Charlie8 DNA MER1_type 83 263 -2154 215 348 89 71 chr3 34566038 34566262 -183470896 + L2 LINE L2 3045 3272 0 373 169 11 34 chr3 34566459 34566548 -183470610 + L1M4 LINE L1 4147 4233 -1913 4047 114 7 10 chr3 34566549 34567152 -183470006 + LTR43 LTR ERV1 2 602 0 1560 239 72 21 chr3 34567166 34567697 -183469461 + L1MC2 LINE L1 1339 1896 -4488 35215 86 16 8 chr3 34567711 34571465 -183465693 - L1PA6 LINE L1 -13 6141 2324 2347 92 0 0 chr3 34571465 34571758 -183465400 - AluY SINE Alu -18 293 1 35215 86 16 8 chr3 34571758 34574090 -183463068 - L1PA6 LINE L1 -3830 2324 11 8075 135 14 4 chr3 34574124 34576274 -183460884 - L1PA10 LINE L1 -4 6164 4000 850 237 72 6 chr3 34576383 34576716 -183460442 + L1MC2 LINE L1 2125 2479 -3905 862 190 101 53 chr3 34576722 34576903 -183460255 + L1MC2 LINE L1 3733 3931 -2451 2192 128 3 0 chr3 34576903 34577200 -183459958 + AluSp SINE Alu 1 298 -15 862 190 101 53 chr3 34577200 34577265 -183459893 + L1MC2 LINE L1 3931 3991 -2391 1981 169 8 6 chr3 34577313 34577668 -183459490 - MLT1A1 LTR MaLR 0 365 10 950 199 46 10 chr3 34577679 34578029 -183459129 + L1MC2 LINE L1 5390 5748 -672 235 208 38 9 chr3 34581077 34581183 -183455975 + (TA)n Simple_repeat Simple_repeat 2 110 0 249 33 0 0 chr3 34581203 34581233 -183455925 + (TG)n Simple_repeat Simple_repeat 2 31 0 548 144 18 45 chr3 34581637 34581748 -183455410 + L1MC2 LINE L1 6062 6169 -411 * 1258 151 5 0 chr3 34581745 34581957 -183455201 - L1MC/D LINE L1 -670 5663 5451 403 316 35 30 chr3 34581961 34582135 -183455023 - MIR SINE MIR -48 214 42 2089 226 64 72 chr3 34583189 34583252 -183453906 - L1ME2 LINE L1 -301 5863 5801 2179 65 62 0 chr3 34583252 34583528 -183453630 + AluY SINE Alu 1 293 -18 2089 226 64 72 chr3 34583528 34584864 -183452294 - L1ME2 LINE L1 -363 5801 4472 268 128 0 21 chr3 34584866 34584913 -183452245 + THE1C LTR MaLR 1 46 -329 856 184 0 0 chr3 34584924 34585060 -183452098 - AluJo SINE Alu -176 136 1 1736 172 23 20 chr3 34585060 34585403 -183451755 + THE1C LTR MaLR 32 375 0 736 204 144 17 chr3 34585404 34585703 -183451455 - L1ME2 LINE L1 -1673 4473 4137 449 339 110 10 chr3 34586534 34586826 -183450332 + L2 LINE L2 2429 2749 -565 611 243 102 44 chr3 34587477 34587703 -183449455 - MIR SINE MIR -16 246 8 512 279 51 17 chr3 34588108 34588289 -183448869 + MIR SINE MIR 34 219 -43 405 292 15 15 chr3 34588703 34588833 -183448325 + MLT2E LTR ERVL 46 175 -453 294 379 36 12 chr3 34588841 34589094 -183448064 + MLT2E LTR ERVL 356 614 -14 1261 178 94 34 chr3 34589154 34589474 -183447684 - MER58B DNA MER1_type -1 340 2 323 283 85 80 chr3 34589479 34589691 -183447467 + MIR SINE MIR 21 233 -29 21 0 0 0 chr3 34590192 34590213 -183446945 + AT_rich Low_complexity Low_complexity 1 21 0 2171 117 10 3 chr3 34590926 34591234 -183445924 - AluSx SINE Alu -2 310 1 301 283 83 56 chr3 34592029 34592209 -183444949 + MIR SINE MIR 49 233 -29 611 283 31 26 chr3 34593202 34593428 -183443730 + L2 LINE L2 3005 3231 -82 5544 48 0 0 chr3 34594848 34595521 -183441637 - L1PA5 LINE L1 0 6154 5482 24 0 0 0 chr3 34595678 34595702 -183441456 + AT_rich Low_complexity Low_complexity 1 24 0 2243 103 169 0 chr3 34595702 34596111 -183441047 - L1MA5 LINE L1 -6 6294 5817 875 176 6 6 chr3 34596133 34596292 -183440866 - MER2 DNA MER2_type -186 159 1 611 175 33 38 chr3 34596294 34596477 -183440681 - L1M1 LINE L1 -3927 2805 2624 9104 181 17 8 chr3 34596482 34599900 -183437258 - L1PB1 LINE L1 -1 6866 3416 2177 141 8 32 chr3 34599897 34600274 -183436884 - L1PB1 LINE L1 -5860 1003 636 * 1078 138 53 0 chr3 34600276 34600464 -183436694 - L1PB1 LINE L1 -6663 200 3 6866 260 42 22 chr3 34600467 34601147 -183436011 - L1M1 LINE L1 -4089 2643 1978 399 21 0 0 chr3 34601147 34601195 -183435963 + (TG)n Simple_repeat Simple_repeat 2 49 0 6866 260 42 22 chr3 34601195 34603052 -183434106 - L1M1 LINE L1 -4754 1978 391 1229 308 22 21 chr3 34603058 34603668 -183433490 - L1M3de LINE L1 -5593 1060 2 25 0 0 0 chr3 34603676 34603701 -183433457 + AT_rich Low_complexity Low_complexity 1 25 0 343 281 40 49 chr3 34604711 34605048 -183432110 + L1MEd LINE L1 1004 1226 -4893 329 352 50 5 chr3 34605053 34605252 -183431906 + HAL1 LINE L1 1458 1665 -842 541 273 110 35 chr3 34605788 34606363 -183430795 + L1MC5 LINE L1 7311 7928 -33 215 79 26 0 chr3 34606752 34606790 -183430368 + (TA)n Simple_repeat Simple_repeat 1 39 0 313 326 49 0 chr3 34606820 34606964 -183430194 + L1MEd LINE L1 2717 2867 -3262 306 329 62 33 chr3 34606985 34607195 -183429963 + L1MEd LINE L1 3255 3470 -2659 330 297 117 23 chr3 34607384 34607512 -183429646 + L1MEd LINE L1 3706 3845 -2284 526 291 98 37 chr3 34607533 34608107 -183429051 + L1MEd LINE L1 3911 4519 -1610 330 67 0 0 chr3 34608161 34608206 -183428952 + (TG)n Simple_repeat Simple_repeat 2 46 0 22 35 0 0 chr3 34608257 34608286 -183428872 + AT_rich Low_complexity Low_complexity 1 29 0 3531 44 0 5 chr3 34608306 34608742 -183428416 - L1PA5 LINE L1 -1 6153 5720 344 303 40 34 chr3 34608742 34608917 -183428241 + L1MEd LINE L1 4655 4830 -1299 482 274 107 19 chr3 34609085 34609300 -183427858 + L1MEd LINE L1 5089 5322 -807 1758 78 4 0 chr3 34609350 34609592 -183427566 + L1PA13 LINE L1 5920 6162 -1 22 35 0 0 chr3 34610362 34610391 -183426767 + AT_rich Low_complexity Low_complexity 1 29 0 42618 47 3 17 chr3 34611177 34617420 -183419738 - L1PA4 LINE L1 -2 6153 1 500 235 88 74 chr3 34618225 34618442 -183418716 - MLT1J LTR MaLR -2 509 290 556 268 34 39 chr3 34618485 34618690 -183418468 - MLT1J LTR MaLR -297 214 11 366 275 17 17 chr3 34618942 34619062 -183418096 + LTR33 LTR ERVL 327 446 -75 558 214 10 0 chr3 34619267 34619370 -183417788 - MER5A DNA MER1_type 0 189 86 5430 115 34 10 chr3 34619377 34620313 -183416845 - L1PB2 LINE L1 0 6151 5214 656 232 0 1 chr3 34620310 34620493 -183416665 + L1PB2 LINE L1 5049 5229 -917 * 277 100 0 0 chr3 34620501 34620541 -183416617 - L1MA1 LINE L1 -7 6295 6256 311 100 0 0 chr3 34620541 34620581 -183416577 - MER5A DNA MER1_type -149 40 1 202 247 56 0 chr3 34621322 34621411 -183415747 + (TA)n Simple_repeat Simple_repeat 1 94 0 587 200 0 17 chr3 34622774 34622889 -183414269 - L2 LINE L2 0 3313 3201 272 295 62 36 chr3 34623389 34623501 -183413657 + L2 LINE L2 3158 3272 0 444 305 0 40 chr3 34623564 34623741 -183413417 - MIR SINE MIR -11 251 82 432 289 74 38 chr3 34624073 34624392 -183412766 + L1MC4a LINE L1 5635 5822 -340 5223 169 15 11 chr3 34674876 34675983 -183361175 + L1PB4 LINE L1 4364 5485 -671 2109 91 0 4 chr3 34675983 34676257 -183360901 + AluY SINE Alu 23 295 -16 5223 169 15 11 chr3 34676257 34676924 -183360234 + L1PB4 LINE L1 5485 6148 -8 2425 57 7 7 chr3 34676934 34677233 -183359925 + AluY SINE Alu 1 299 -12 2380 167 21 15 chr3 34677238 34677711 -183359447 - L1MA7 LINE L1 -145 6146 5671 1160 149 70 9 chr3 34677715 34677929 -183359229 - THE1B LTR MaLR -137 227 1 11708 95 6 2 chr3 34677929 34679503 -183357655 - THE1B-int LTR MaLR 0 1580 1 2040 131 98 15 chr3 34679503 34679839 -183357319 - THE1B LTR MaLR 0 364 1 830 298 86 32 chr3 34680294 34680508 -183356650 + LTR16C LTR ERVL 36 237 -254 1783 197 65 18 chr3 34680508 34680954 -183356204 - MLT1C LTR MaLR 0 467 1 830 298 86 32 chr3 34680954 34681172 -183355986 + LTR16C LTR ERVL 237 491 0 221 366 14 0 chr3 34682345 34682416 -183354742 + L2 LINE L2 3201 3272 0 273 320 162 17 chr3 34683286 34683509 -183353649 - MIR SINE MIR -1 261 2 3731 158 29 6 chr3 34683615 34684304 -183352854 - MER50 LTR ERV1 -23 711 7 592 312 63 61 chr3 34685516 34686022 -183351136 + MLT1K LTR MaLR 76 582 -6 890 221 103 0 chr3 34686146 34686341 -183350817 + MER20 DNA MER1_type 1 215 -4 266 282 107 19 chr3 34686405 34686508 -183350650 - L2 LINE L2 -1 3271 3160 186 43 0 0 chr3 34686776 34686799 -183350359 + (T)n Simple_repeat Simple_repeat 1 23 0 258 308 106 0 chr3 34687928 34688032 -183349126 - MIR SINE MIR 0 262 148 1442 216 51 100 chr3 34688040 34688801 -183348357 - MER49 LTR ERV1 -28 895 1 4872 175 17 5 chr3 34688909 34690559 -183346599 - L1PB4 LINE L1 0 6156 4492 1671 52 0 44 chr3 34690670 34690899 -183346259 + LTR17 LTR ERV1 108 326 -454 205 214 34 22 chr3 34691448 34691537 -183345621 + (TTATA)n Simple_repeat Simple_repeat 4 93 0 29 84 0 0 chr3 34691538 34691609 -183345549 + AT_rich Low_complexity Low_complexity 1 71 0 187 80 23 68 chr3 34691630 34691718 -183345440 + (TAA)n Simple_repeat Simple_repeat 3 86 0 418 265 234 4 chr3 34691793 34692050 -183345108 - L1ME3A LINE L1 -48 6122 5807 468 285 19 5 chr3 34692063 34692270 -183344888 - L1M4 LINE L1 -3404 2742 2533 228 282 56 0 chr3 34692270 34692341 -183344817 - MIR3 SINE MIR -24 184 110 539 291 19 0 chr3 34692352 34692510 -183344648 - MIR SINE MIR -10 252 92 195 243 29 71 chr3 34692590 34692660 -183344498 - L2 LINE L2 -6 3266 3200 396 0 0 0 chr3 34693684 34693728 -183343430 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 629 226 0 22 chr3 34694342 34694479 -183342679 + LTR16A LTR ERVL 315 448 -2 231 341 40 0 chr3 34696377 34696503 -183340655 - L1ME3A LINE L1 -1997 5811 5681 1997 142 19 45 chr3 34696622 34696996 -183340162 - THE1B LTR MaLR 0 364 1 327 351 83 66 chr3 34697041 34697403 -183339755 + L2 LINE L2 2853 3220 -52 3849 177 42 7 chr3 34698326 34699467 -183337691 - L1MB3 LINE L1 -143 6040 4855 875 325 13 24 chr3 34699484 34699862 -183337296 + L1PA16 LINE L1 788 1161 -6413 12114 217 40 30 chr3 34700538 34701388 -183335770 + L1PA16 LINE L1 2182 3022 -4582 2245 117 144 5 chr3 34701388 34701763 -183335395 + MSTA LTR MaLR 2 428 0 12114 217 40 30 chr3 34701763 34702011 -183335147 + L1PA16 LINE L1 3022 3266 -4338 1625 184 3 55 chr3 34702011 34702338 -183334820 - AluJb SINE Alu -2 310 1 12114 217 40 30 chr3 34702338 34706564 -183330594 + L1PA16 LINE L1 3266 7601 -3 419 236 32 8 chr3 34706559 34706682 -183330476 - L1MB3 LINE L1 -1286 4860 4735 * 35189 85 15 15 chr3 34706678 34712819 -183324339 - L1PA6 LINE L1 -4 6150 11 1863 200 23 40 chr3 34712837 34712900 -183324258 - L1MB3 LINE L1 -1392 4754 4691 691 164 8 8 chr3 34712900 34713028 -183324130 - L1MC1 LINE L1 0 6333 6206 1863 200 23 40 chr3 34713028 34713534 -183323624 - L1MB3 LINE L1 -1455 4691 4195 346 320 148 8 chr3 34713546 34713911 -183323247 - L1MC1 LINE L1 -1992 5816 5401 2698 240 30 72 chr3 34713977 34714781 -183322377 - L1ME1 LINE L1 -5 6230 5394 252 0 0 0 chr3 34714781 34714809 -183322349 + (TG)n Simple_repeat Simple_repeat 1 28 0 2698 240 30 72 chr3 34714809 34715831 -183321327 - L1ME1 LINE L1 -841 5394 2582 561 275 73 44 chr3 34715821 34716301 -183320857 - L1ME1 LINE L1 -4189 2207 1714 * 216 0 0 0 chr3 34718036 34718060 -183319098 + (T)n Simple_repeat Simple_repeat 1 24 0 484 300 33 46 chr3 34718153 34718393 -183318765 - L2 LINE L2 -4 3309 3073 207 219 0 0 chr3 34719240 34719281 -183317877 + (TA)n Simple_repeat Simple_repeat 2 42 0 1724 161 51 46 chr3 34719980 34720353 -183316805 + THE1C LTR MaLR 1 375 0 2335 121 0 0 chr3 34720416 34720723 -183316435 - AluSg SINE Alu -3 307 1 361 355 91 0 chr3 34720723 34720909 -183316249 - MIR SINE MIR -58 204 2 378 276 51 29 chr3 34721091 34721373 -183315785 + L1M3c LINE L1 165 890 -5321 726 92 0 84 chr3 34721380 34721511 -183315647 - MLT2A2 LTR ERVL -332 121 2 1165 199 8 34 chr3 34721513 34721805 -183315353 + L1MA9 LINE L1 4562 4846 -1300 2056 164 140 0 chr3 34721805 34722119 -183315039 + L1MA9 LINE L1 5784 6185 -127 210 37 0 0 chr3 34722119 34722146 -183315012 + (CA)n Simple_repeat Simple_repeat 2 28 0 2056 164 140 0 chr3 34722146 34722295 -183314863 + L1MA9 LINE L1 6185 6312 0 2262 118 51 25 chr3 34722335 34722690 -183314468 + THE1B LTR MaLR 1 364 0 1597 176 61 58 chr3 34722719 34723082 -183314076 + MLT1A1 LTR MaLR 2 365 0 180 200 0 0 chr3 34723947 34723987 -183313171 + GA-rich Low_complexity Low_complexity 2 41 0 216 345 119 5 chr3 34724570 34724764 -183312394 - MIR SINE MIR -7 255 40 412 237 35 0 chr3 34724784 34724898 -183312260 + MLT1H1 LTR MaLR 1 118 -477 5956 78 12 12 chr3 34724898 34725744 -183311414 + L1MA1 LINE L1 5449 6294 -8 1149 130 0 0 chr3 34725764 34725918 -183311240 - AluSg/x SINE Alu -27 285 132 21 0 0 0 chr3 34725918 34725939 -183311219 + AT_rich Low_complexity Low_complexity 1 21 0 1249 259 50 41 chr3 34725945 34726362 -183310796 + MLT1H1 LTR MaLR 69 489 -66 1776 177 14 0 chr3 34726420 34726703 -183310455 + AluJo SINE Alu 1 287 -25 387 311 86 43 chr3 34728206 34728415 -183308743 + MIR SINE MIR 2 219 -43 296 323 50 0 chr3 34728760 34728859 -183308299 + L2 LINE L2 3209 3312 -1 2021 113 42 58 chr3 34728957 34729337 -183307821 + THE1C LTR MaLR 1 374 -1 477 148 0 0 chr3 34729337 34729418 -183307740 + (TTCC)n Simple_repeat Simple_repeat 3 83 0 392 218 323 8 chr3 34729683 34729816 -183307342 + MER5A DNA MER1_type 15 189 0 381 197 0 14 chr3 34729893 34729964 -183307194 - LTR35 LTR ERV1 -43 575 506 213 39 0 0 chr3 34729967 34729993 -183307165 + (GA)n Simple_repeat Simple_repeat 1 26 0 250 196 0 0 chr3 34730112 34730163 -183306995 - LTR43 LTR ERV1 -325 277 227 3281 232 131 3 chr3 34730173 34731262 -183305896 + L1PB1 LINE L1 6 1383 -5480 * 12478 191 17 8 chr3 34731260 34734746 -183302412 + L1PB1 LINE L1 2984 6507 -360 300 70 0 0 chr3 34734746 34734789 -183302369 + (TA)n Simple_repeat Simple_repeat 2 44 0 12478 191 17 8 chr3 34734789 34735150 -183302008 + L1PB1 LINE L1 6507 6863 -4 30 27 0 0 chr3 34737327 34737364 -183299794 + AT_rich Low_complexity Low_complexity 1 37 0 1508 99 0 0 chr3 34739206 34739398 -183297760 - AluSx SINE Alu -81 231 40 1628 150 74 9 chr3 34739416 34739742 -183297416 + MER47A DNA MER2_type 18 364 -2 369 0 0 0 chr3 34739808 34739849 -183297309 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 2925 61 0 12 chr3 34739850 34740261 -183296897 - LTR7 LTR ERV1 -44 406 1 25530 90 10 12 chr3 34740261 34744908 -183292250 - HERVH LTR ERV1 0 7713 3139 14223 101 10 22 chr3 34744887 34747669 -183289489 - HERVH LTR ERV1 -4718 2995 2 * 731 78 0 10 chr3 34747671 34747774 -183289384 - LTR7 LTR ERV1 -2 448 347 756 197 7 14 chr3 34747776 34747923 -183289235 - MER20 DNA MER1_type -71 148 3 592 277 136 38 chr3 34748326 34748723 -183288435 - MLT1J2 LTR MaLR -2 448 13 295 218 182 9 chr3 34750188 34750412 -183286746 - L1ME4a LINE L1 -50 6071 5794 264 293 20 0 chr3 34750430 34750529 -183286629 - L1ME4a LINE L1 -405 5716 5616 2476 54 37 0 chr3 34750996 34751294 -183285864 + AluY SINE Alu 1 309 -2 308 319 0 0 chr3 34751514 34751586 -183285572 - L2 LINE L2 -16 3256 3185 517 86 0 0 chr3 34752017 34752087 -183285071 + AluS SINE Alu 1 70 -242 858 123 0 0 chr3 34752087 34752217 -183284941 + AluSp/q SINE Alu 174 303 -10 246 116 0 0 chr3 34753139 34753182 -183283976 + (TA)n Simple_repeat Simple_repeat 2 44 0 2753 188 45 22 chr3 34754111 34754288 -183282870 - L1MC4 LINE L1 0 8042 7870 2154 151 14 22 chr3 34754288 34754653 -183282505 + THE1B LTR MaLR 1 362 -2 2753 188 45 22 chr3 34754653 34755097 -183282061 - L1MC4 LINE L1 -172 7870 7407 909 210 0 0 chr3 34755183 34755350 -183281808 - FRAM SINE Alu -9 167 1 502 301 78 45 chr3 34755368 34755677 -183281481 - L1ME LINE L1 -401 5720 5402 * 14312 192 31 10 chr3 34755670 34761039 -183276119 - L1PB1 LINE L1 -1 6866 1392 784 229 29 24 chr3 34761016 34761226 -183275932 - L1PB1 LINE L1 -6647 216 6 * 2263 92 0 7 chr3 34761959 34762264 -183274894 - AluY SINE Alu -8 303 1 534 16 0 0 chr3 34762307 34762370 -183274788 + (CA)n Simple_repeat Simple_repeat 1 63 0 243 103 0 0 chr3 34762370 34762409 -183274749 + (TC)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr3 34763259 34763287 -183273871 + AT_rich Low_complexity Low_complexity 1 28 0 244 292 35 26 chr3 34765091 34765204 -183271954 + L1ME LINE L1 5506 5586 -598 1011 273 61 87 chr3 34765204 34765742 -183271416 - MLT1H1 LTR MaLR 0 555 32 372 251 101 14 chr3 34765873 34766018 -183271140 + L1ME LINE L1 5669 5841 -333 2288 107 0 0 chr3 34766271 34766579 -183270579 - AluSq SINE Alu -5 308 1 390 236 28 19 chr3 34767285 34767391 -183269767 + LTR33 LTR ERVL 18 124 -397 263 292 150 0 chr3 34768874 34768994 -183268164 - MLT1L LTR MaLR -477 138 1 369 319 65 18 chr3 34768994 34769163 -183267995 - MIR SINE MIR -21 241 65 285 283 44 35 chr3 34769184 34769297 -183267861 - L2 LINE L2 -36 3277 3164 2771 65 3 0 chr3 34771923 34772277 -183264881 - L1PA7 LINE L1 -1 6153 5799 4559 97 3 3 chr3 34772278 34772940 -183264218 + L1P LINE L1 4397 5058 -1088 2238 310 117 27 chr3 34772940 34774346 -183262812 + L2 LINE L2 1521 3058 -255 246 277 10 40 chr3 34776344 34776445 -183260713 + L1ME3A LINE L1 5689 5786 -2022 721 217 72 0 chr3 34776722 34776874 -183260284 - FRAM SINE Alu -5 171 9 2177 174 38 33 chr3 34776881 34777307 -183259851 + MSTA LTR MaLR 1 428 0 195 42 0 0 chr3 34777753 34777777 -183259381 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 256 321 37 0 chr3 34778029 34778110 -183259048 - MIR SINE MIR -109 153 70 21 0 0 0 chr3 34778149 34778170 -183258988 + AT_rich Low_complexity Low_complexity 1 21 0 272 250 22 11 chr3 34778594 34778686 -183258472 - MLT1L LTR MaLR -10 605 513 21 0 0 0 chr3 34780294 34780315 -183256843 + AT_rich Low_complexity Low_complexity 1 21 0 186 333 56 0 chr3 34780945 34781017 -183256141 + L3b LINE CR1 1170 1245 -338 226 278 174 43 chr3 34781342 34781457 -183255701 - MIR3 SINE MIR -65 143 14 537 303 48 19 chr3 34781701 34781909 -183255249 + MIR SINE MIR 49 262 0 1073 244 30 118 chr3 34782021 34782452 -183254706 + MLT1I LTR MaLR 12 404 -5 21 0 0 0 chr3 34783199 34783220 -183253938 + AT_rich Low_complexity Low_complexity 1 21 0 272 281 79 0 chr3 34784416 34784505 -183252653 - MIR SINE MIR -69 139 44 544 276 35 12 chr3 34784712 34784882 -183252276 + MIR SINE MIR 12 185 -77 268 360 18 0 chr3 34785297 34785411 -183251747 - MIR3 SINE MIR -12 196 81 812 159 118 18 chr3 34786141 34786311 -183250847 - MER5A DNA MER1_type -1 188 2 184 245 75 0 chr3 34788208 34788261 -183248897 + MIR SINE MIR 173 229 -33 552 290 86 26 chr3 34789223 34789492 -183247666 + L1ME3A LINE L1 5877 6161 -9 1064 246 88 13 chr3 34790182 34790556 -183246602 + LTR48B LTR ERV1 243 644 0 2841 176 72 28 chr3 34790558 34791138 -183246020 + LTR48B-int LTR ERV1 1 606 -5725 15013 230 30 19 chr3 34791155 34793510 -183243648 - L1PA15 LINE L1 -4 7599 5271 1842 123 120 30 chr3 34793510 34793843 -183243315 + THE1B LTR MaLR 1 363 -1 15013 230 30 19 chr3 34793843 34797428 -183239730 - L1PA15 LINE L1 -2332 5271 1587 607 337 14 24 chr3 34797432 34797723 -183239435 - L1PA15 LINE L1 -7178 403 116 1314 209 14 87 chr3 34797724 34798068 -183239090 + LTR48B-int LTR ERV1 597 915 -5416 467 200 50 67 chr3 34798158 34798278 -183238880 + LTR48B-int LTR ERV1 1084 1201 -5130 326 239 28 0 chr3 34798286 34798357 -183238801 + tRNA-Glu-GAG tRNA tRNA 3 75 0 207 333 0 0 chr3 34799048 34799114 -183238044 + GA-rich Low_complexity Low_complexity 1 66 0 1828 177 10 6 chr3 34799872 34800183 -183236975 + AluJb SINE Alu 1 312 0 2832 170 55 96 chr3 34800299 34801016 -183236142 + LTR48B-int LTR ERV1 1283 1961 -4370 198 0 0 0 chr3 34801016 34801038 -183236120 + (CG)n Simple_repeat Simple_repeat 1 22 0 2832 170 55 96 chr3 34801038 34801173 -183235985 + LTR48B-int LTR ERV1 1961 2100 -4231 696 163 53 74 chr3 34801165 34801369 -183235789 + LTR48B-int LTR ERV1 1150 3108 -265 * 293 216 9 103 chr3 34801379 34801495 -183235663 + LTR48B-int LTR ERV1 3281 3385 -2561 7506 189 64 59 chr3 34801639 34802152 -183235006 + LTR48B-int LTR ERV1 3721 4230 -2101 10760 91 4 4 chr3 34802152 34802494 -183234664 - L1PA8 LINE L1 -7 6165 5824 222 37 0 0 chr3 34802494 34802521 -183234637 + (TA)n Simple_repeat Simple_repeat 1 27 0 10760 91 4 4 chr3 34802521 34804458 -183232700 - L1PA8 LINE L1 -347 5825 3849 7506 189 64 59 chr3 34804458 34806354 -183230804 + LTR48B-int LTR ERV1 4230 6173 -158 416 138 126 46 chr3 34806450 34806537 -183230621 + LTR48B LTR ERV1 3 96 -548 2141 196 81 56 chr3 34806548 34807176 -183229982 + LTR48B LTR ERV1 1 644 0 453 258 78 36 chr3 34807286 34807453 -183229705 + MER5A DNA MER1_type 16 189 0 543 191 113 43 chr3 34808521 34808662 -183228496 + MER20 DNA MER1_type 45 195 -24 11066 34 1 1 chr3 34859440 34860867 -183176291 - L1P LINE L1 -2182 3964 2537 7454 32 0 1 chr3 34860864 34861810 -183175348 + L1P LINE L1 1607 2551 -3595 * 605 326 54 4 chr3 34862141 34862402 -183174756 + MLT1I LTR MaLR 27 300 -109 2563 166 125 22 chr3 34862429 34863012 -183174146 - MER73 LTR ERVL 0 644 2 252 348 33 0 chr3 34863076 34863168 -183173990 - L2 LINE L2 0 3272 3178 518 179 41 41 chr3 34863562 34863707 -183173451 + MLT1I LTR MaLR 439 583 -7 711 210 68 6 chr3 34864132 34864308 -183172850 - MER5A DNA MER1_type 0 189 3 227 302 47 0 chr3 34864325 34864411 -183172747 - MER117 DNA MER1_type -19 178 89 396 0 0 0 chr3 34864815 34864859 -183172299 + (CA)n Simple_repeat Simple_repeat 1 44 0 692 282 56 9 chr3 34865664 34865877 -183171281 - MIR SINE MIR 0 262 40 2001 129 7 23 chr3 34866279 34866582 -183170576 + AluSg SINE Alu 1 298 -12 21 0 0 0 chr3 34866683 34866704 -183170454 + AT_rich Low_complexity Low_complexity 1 21 0 396 342 86 45 chr3 34866759 34867177 -183169981 + L2 LINE L2 237 671 -2643 182 383 94 0 chr3 34867200 34867328 -183169830 + L2 LINE L2 1003 1142 -2172 645 273 134 4 chr3 34867387 34867625 -183169533 - L2 LINE L2 -500 2814 2546 1908 135 7 21 chr3 34868589 34868878 -183168280 + AluSg SINE Alu 1 285 -25 396 167 0 0 chr3 34869290 34869362 -183167796 + (TA)n Simple_repeat Simple_repeat 1 72 0 1162 235 61 12 chr3 34870522 34870850 -183166308 + MER2 DNA MER2_type 1 344 0 284 261 39 23 chr3 34871596 34871726 -183165432 + L1M4 LINE L1 2932 3063 -3083 238 281 146 0 chr3 34872126 34872208 -183164950 + MER5B DNA MER1_type 8 101 -77 1939 115 35 45 chr3 34873119 34873432 -183163726 + AluSx SINE Alu 1 310 -2 379 221 0 0 chr3 34873440 34873517 -183163641 + AluJ/FRAM SINE Alu 226 302 0 350 304 32 0 chr3 34873529 34873654 -183163504 + L1MEc LINE L1 1032 1160 -5236 715 368 97 2 chr3 34873654 34874108 -183163050 - ERVL LTR ERVL -3210 2554 2058 904 160 5 60 chr3 34874186 34874386 -183162772 + L1MA8 LINE L1 5966 6154 -137 1264 125 6 0 chr3 34874386 34874562 -183162596 + AluSp SINE Alu 106 282 -31 644 159 8 0 chr3 34874562 34874694 -183162464 + L1MA8 LINE L1 6154 6286 -5 266 369 34 6 chr3 34874729 34874908 -183162250 - ERVL LTR ERVL -3699 1955 1772 2169 115 0 7 chr3 34876135 34876440 -183160718 + AluSx SINE Alu 1 303 -9 1057 99 0 44 chr3 34878132 34878314 -183158844 + L1MA1 LINE L1 6129 6302 0 1753 187 14 14 chr3 34878322 34878686 -183158472 + L1MD1 LINE L1 5861 6224 -18 24 67 0 0 chr3 34878727 34878772 -183158386 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr3 34878825 34878846 -183158312 + AT_rich Low_complexity Low_complexity 1 21 0 201 227 0 0 chr3 34878967 34879011 -183158147 + (TCCA)n Simple_repeat Simple_repeat 2 45 0 265 325 0 12 chr3 34879878 34879958 -183157200 - L2 LINE L2 -4 3268 3190 9792 30 0 0 chr3 34880162 34882099 -183155059 + L1PA3 LINE L1 4215 6152 -3 379 285 15 15 chr3 34883986 34884116 -183153042 - MER117 DNA MER1_type -65 132 3 213 357 48 24 chr3 34884280 34884406 -183152752 + L2 LINE L2 3140 3268 -4 567 127 25 0 chr3 34884592 34884671 -183152487 + FRAM SINE Alu 61 141 -35 551 289 13 0 chr3 34885641 34885790 -183151368 + ERVL-C1 LTR ERVL 552 702 -5062 1732 296 62 15 chr3 34885827 34886631 -183150527 + ERVL-C1 LTR ERVL 813 1636 -4018 2072 236 10 20 chr3 34886632 34887128 -183150030 + ERVL-C1 LTR ERVL 3762 4252 -1512 437 278 9 0 chr3 34887142 34887250 -183149908 - ERVL LTR ERVL -1384 4380 4272 1306 229 15 15 chr3 34887250 34887577 -183149581 + MLT1A1 LTR MaLR 28 354 -11 829 199 13 35 chr3 34887699 34887925 -183149233 + ERVL-C1 LTR ERVL 5534 5754 -10 634 230 0 30 chr3 34887927 34888092 -183149066 + MLT2C1 LTR ERVL 1 160 -237 525 276 78 10 chr3 34887974 34888166 -183148992 + MLT1E3 LTR MaLR 64 268 -356 * 23 0 0 0 chr3 34888316 34888339 -183148819 + AT_rich Low_complexity Low_complexity 1 23 0 386 69 17 0 chr3 34888358 34888416 -183148742 + (TG)n Simple_repeat Simple_repeat 2 60 0 321 256 39 0 chr3 34888466 34888544 -183148614 - LTR50 LTR ERVL -714 81 1 282 219 47 0 chr3 34889267 34889331 -183147827 - Charlie8 DNA MER1_type -1001 1416 1350 * 443 224 10 0 chr3 34889329 34889427 -183147731 + MLT2C1 LTR ERVL 21 119 -278 * 543 262 84 19 chr3 34889418 34889632 -183147526 - Charlie8 DNA MER1_type -2152 265 38 29 28 0 0 chr3 34890841 34890877 -183146281 + AT_rich Low_complexity Low_complexity 1 36 0 2243 74 0 14 chr3 34891472 34891757 -183145401 - AluY SINE Alu -30 281 1 253 347 50 8 chr3 34891773 34891894 -183145264 + MIR SINE MIR 19 144 -118 324 239 64 18 chr3 34892233 34892342 -183144816 - MLT1H LTR MaLR 0 549 436 651 226 67 16 chr3 34892536 34892753 -183144405 - MLT1H LTR MaLR -310 239 4 450 265 0 0 chr3 34892756 34892854 -183144304 - MIR SINE MIR -62 146 49 494 283 71 38 chr3 34894699 34894911 -183142247 - MIR SINE MIR -14 248 30 2504 122 0 11 chr3 34895704 34896072 -183141086 - THE1B LTR MaLR 0 364 1 183 42 0 0 chr3 34896120 34896144 -183141014 + (TC)n Simple_repeat Simple_repeat 1 24 0 298 234 26 0 chr3 34896325 34896402 -183140756 - MARNA DNA Mariner -246 340 262 1218 225 103 0 chr3 34896522 34896833 -183140325 + MER2 DNA MER2_type 1 343 -1 287 329 56 40 chr3 34897438 34897687 -183139471 - LTR16B LTR ERVL -175 289 37 269 291 71 39 chr3 34898683 34898810 -183138348 - MIR SINE MIR -57 151 21 237 254 51 0 chr3 34898857 34898916 -183138242 + L2 LINE L2 3208 3269 -3 21 0 0 0 chr3 34899459 34899480 -183137678 + AT_rich Low_complexity Low_complexity 1 21 0 708 216 8 0 chr3 34899487 34899612 -183137546 - FLAM_A SINE Alu -6 127 2 979 229 52 16 chr3 34899683 34899988 -183137170 + L1ME2 LINE L1 5726 6041 -123 284 164 0 0 chr3 34899982 34900037 -183137121 + L1ME3 LINE L1 6100 6154 -8 * 198 231 154 22 chr3 34900494 34900585 -183136573 + MIR SINE MIR 149 251 -11 2192 111 0 7 chr3 34900624 34900921 -183136237 - AluSg SINE Alu -15 295 1 2431 86 3 0 chr3 34901253 34901554 -183135604 - AluSp SINE Alu -11 302 1 349 313 11 57 chr3 34902160 34902336 -183134822 + MIR SINE MIR 13 180 -82 180 0 0 0 chr3 34902353 34902373 -183134785 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2342 84 0 3 chr3 34902380 34902677 -183134481 - AluY SINE Alu -15 296 1 2301 98 55 0 chr3 34902679 34903025 -183134133 - L1PA13 LINE L1 -5 6158 5794 5400 103 1 0 chr3 34903036 34903785 -183133373 + L1P LINE L1 11 760 -5386 299 276 43 86 chr3 34903934 34904097 -183133061 - MLT1F1 LTR MaLR -302 265 110 371 278 111 14 chr3 34904285 34904429 -183132729 - MIR3 SINE MIR -30 178 21 559 271 32 7 chr3 34904433 34904588 -183132570 + MIR SINE MIR 92 250 -12 1535 276 91 79 chr3 34904915 34905676 -183131482 + L2 LINE L2 2192 2991 -322 2248 110 3 3 chr3 34905676 34905986 -183131172 + AluSx SINE Alu 3 312 0 1535 276 91 79 chr3 34905986 34906313 -183130845 + L2 LINE L2 2991 3312 -1 365 371 38 0 chr3 34906475 34906661 -183130497 + L2 LINE L2 2259 2451 -863 731 327 62 62 chr3 34906751 34907335 -183129823 - L2 LINE L2 -2150 1164 581 209 370 20 10 chr3 34907412 34907512 -183129646 + L2 LINE L2 2538 2638 -676 255 280 47 13 chr3 34907775 34907927 -183129231 - MER20B DNA MER1_type 0 219 57 377 86 17 0 chr3 34909750 34909808 -183127350 + (TC)n Simple_repeat Simple_repeat 2 60 0 572 199 210 32 chr3 34910379 34910565 -183126593 + MER20 DNA MER1_type 1 219 0 348 262 48 0 chr3 34910599 34910683 -183126475 + MIR SINE MIR 63 150 -112 181 396 93 27 chr3 34911956 34912181 -183124977 + L2 LINE L2 2934 3173 -99 247 345 24 12 chr3 34913538 34913622 -183123536 - L2 LINE L2 -26 3246 3162 1656 192 6 28 chr3 34913801 34914118 -183123040 - AluJb SINE Alu -2 310 1 1829 154 143 16 chr3 34914461 34914838 -183122320 + MSTA LTR MaLR 1 425 -3 5509 186 10 3 chr3 34915054 34916124 -183121034 + L1P LINE L1 3491 4568 -1578 489 288 76 34 chr3 34916234 34916470 -183120688 + MIR SINE MIR 17 262 0 194 301 119 42 chr3 34916643 34916786 -183120372 + L2 LINE L2 3160 3313 0 187 310 0 35 chr3 34916850 34916908 -183120250 + L2 LINE L2 3209 3264 -8 200 239 43 0 chr3 34917719 34917765 -183119393 - MER91A DNA MER1_type -131 65 18 * 330 225 35 92 chr3 34917746 34917888 -183119270 + MIR SINE MIR 9 142 -120 1483 244 64 20 chr3 34918224 34918663 -183118495 + L1ME3 LINE L1 5682 6139 -23 275 0 29 0 chr3 34918730 34918765 -183118393 + (TAGA)n Simple_repeat Simple_repeat 4 39 0 207 325 8 83 chr3 34920182 34920233 -183116925 - MIR SINE MIR -68 140 87 1022 198 5 0 chr3 34920233 34920420 -183116738 + MER5A DNA MER1_type 1 188 -1 207 325 8 83 chr3 34920420 34920488 -183116670 - MIR SINE MIR -121 87 30 620 304 110 10 chr3 34920889 34921188 -183115970 - MER102a DNA MER1_type -1 329 1 363 248 105 9 chr3 34922873 34922978 -183114180 - MIR3 SINE MIR -47 161 47 232 322 59 17 chr3 34923193 34923311 -183113847 + MIR SINE MIR 59 181 -81 755 206 72 12 chr3 34924607 34925056 -183112102 - L1ME3A LINE L1 -221 6343 5826 198 0 0 0 chr3 34925098 34925120 -183112038 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1677 131 43 46 chr3 34925121 34925403 -183111755 - AluSq SINE Alu -32 281 1 288 0 0 0 chr3 34925409 34925441 -183111717 + (T)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr3 34925471 34925492 -183111666 + AT_rich Low_complexity Low_complexity 1 21 0 42898 33 21 1 chr3 34925494 34931526 -183105632 - L1PA2 LINE L1 0 6155 1 466 305 40 44 chr3 34931528 34931800 -183105358 - L1ME3A LINE L1 -961 5579 5309 1004 282 88 52 chr3 34931801 34932607 -183104551 - L1ME3A LINE L1 -1335 5205 4371 657 304 97 10 chr3 34932770 34933234 -183103924 - L1MEc LINE L1 -4500 2040 1565 2862 96 2 0 chr3 34934155 34934549 -183102609 + L1PA8 LINE L1 5776 6170 -2 595 247 108 86 chr3 34935626 34936274 -183100884 - L1ME4a LINE L1 -12 6109 5448 2296 73 3 7 chr3 34937420 34937721 -183099437 + AluY SINE Alu 2 301 -10 249 331 47 0 chr3 34937830 34937957 -183099201 - L1ME LINE L1 -460 5661 5529 1539 190 53 9 chr3 34937971 34938292 -183098866 + MER2 DNA MER2_type 1 335 -10 43001 30 21 1 chr3 34938776 34944804 -183092354 - L1HS LINE L1 0 6155 4 418 140 43 0 chr3 34945318 34945411 -183091747 + GA-rich Low_complexity Low_complexity 3 99 0 330 245 82 20 chr3 34946222 34946320 -183090838 + MIR SINE MIR 36 139 -123 1889 131 139 18 chr3 34946773 34947110 -183090048 - MER83B LTR ERV1 0 378 1 1037 315 52 26 chr3 34947131 34947557 -183089601 - ERVL LTR ERVL -3478 2286 1850 307 336 21 7 chr3 34947602 34947745 -183089413 - ERVL LTR ERVL -3985 1779 1635 306 206 27 14 chr3 34948016 34948089 -183089069 - LTR33 LTR ERVL -26 495 422 519 17 0 0 chr3 34948480 34948540 -183088618 + (TG)n Simple_repeat Simple_repeat 2 61 0 26 30 0 0 chr3 34948606 34948639 -183088519 + AT_rich Low_complexity Low_complexity 1 33 0 279 0 0 0 chr3 34948912 34948943 -183088215 + (TG)n Simple_repeat Simple_repeat 2 32 0 231 260 13 13 chr3 34949805 34949882 -183087276 + (TTTA)n Simple_repeat Simple_repeat 1 77 0 201 393 0 0 chr3 34949936 34949997 -183087161 - L2 LINE L2 -85 3187 3127 305 285 70 91 chr3 34950499 34950741 -183086417 - MLT1I LTR MaLR -18 391 155 1686 193 3 3 chr3 34950769 34951080 -183086078 + AluJo SINE Alu 1 311 -1 874 260 87 4 chr3 34952012 34952254 -183084904 + MIR SINE MIR 1 262 0 1107 55 0 0 chr3 34952642 34952770 -183084388 + AluY SINE Alu 163 290 -21 22 0 0 0 chr3 34952799 34952821 -183084337 + AT_rich Low_complexity Low_complexity 1 22 0 2864 132 31 50 chr3 34953265 34953652 -183083506 - L1PA16 LINE L1 0 6166 5790 1676 134 0 0 chr3 34953652 34953883 -183083275 - AluJo SINE Alu -81 231 1 2864 132 31 50 chr3 34953883 34954017 -183083141 - L1PA16 LINE L1 -376 5790 5655 525 244 3 22 chr3 34954428 34954611 -183082547 - MLT1I LTR MaLR 0 409 275 392 363 132 16 chr3 34956108 34956480 -183080678 - L2 LINE L2 -639 2675 2261 21 0 0 0 chr3 34957421 34957442 -183079716 + AT_rich Low_complexity Low_complexity 1 21 0 311 281 117 42 chr3 34957803 34958163 -183078995 + L1ME4a LINE L1 5729 6115 -6 383 252 31 84 chr3 34960013 34960145 -183077013 - MLT1E LTR MaLR -421 121 1 183 129 0 0 chr3 34960351 34960382 -183076776 + (TTTC)n Simple_repeat Simple_repeat 1 31 0 345 271 286 0 chr3 34961075 34961215 -183075943 - MER5A DNA MER1_type -2 187 8 256 329 9 72 chr3 34961223 34961445 -183075713 - L2 LINE L2 -4 3309 3102 321 351 9 9 chr3 34961505 34961619 -183075539 - L2 LINE L2 -1 3271 3158 1020 246 58 13 chr3 34961698 34962168 -183074990 + MLT1F1 LTR MaLR 3 567 0 436 309 95 0 chr3 34962198 34962324 -183074834 - L2 LINE L2 -1 3271 3134 26 30 0 0 chr3 34962336 34962369 -183074789 + AT_rich Low_complexity Low_complexity 1 33 0 525 362 86 26 chr3 34962560 34962944 -183074214 - L2 LINE L2 -358 2956 2550 235 365 64 75 chr3 34962986 34963268 -183073890 + L2 LINE L2 2985 3263 -9 445 319 70 25 chr3 34964520 34964677 -183072481 - MIR SINE MIR -76 186 23 540 327 36 5 chr3 34965005 34965225 -183071933 + MER102b DNA MER1_type 85 311 -30 711 274 16 0 chr3 34965416 34965602 -183071556 - MER5A DNA MER1_type 0 189 1 501 17 0 0 chr3 34968038 34968096 -183069062 + (TG)n Simple_repeat Simple_repeat 1 58 0 339 65 0 0 chr3 34968096 34968142 -183069016 + (GA)n Simple_repeat Simple_repeat 2 47 0 1751 199 68 66 chr3 34969435 34969937 -183067221 + MLT1D LTR MaLR 3 505 0 259 222 93 0 chr3 34971234 34971288 -183065870 - L2 LINE L2 -3 3269 3211 181 245 20 0 chr3 34971737 34971786 -183065372 - MIR SINE MIR -78 130 81 243 0 0 0 chr3 34971878 34971905 -183065253 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 28 0 0 0 chr3 34973349 34973377 -183063781 + AT_rich Low_complexity Low_complexity 1 28 0 333 333 42 12 chr3 34974150 34974318 -183062840 - MIR SINE MIR -55 207 35 844 259 28 0 chr3 34974475 34974691 -183062467 + MER58A DNA MER1_type 3 224 0 9799 70 7 0 chr3 34976425 34978510 -183058648 + L1PA6 LINE L1 4046 6153 -1 1589 278 93 25 chr3 34978531 34979060 -183058098 - MLT1G LTR MaLR 0 590 26 292 281 257 12 chr3 34980773 34980944 -183056214 - MIR SINE MIR -16 246 34 544 256 57 34 chr3 34981669 34981992 -183055166 - L1ME LINE L1 -316 5805 5474 602 315 195 22 chr3 34982494 34983382 -183053776 + L2 LINE L2 1614 2654 -660 1045 195 188 11 chr3 34983388 34983660 -183053498 - MLT1D LTR MaLR 0 505 186 1242 191 0 42 chr3 34983662 34983898 -183053260 - AluJb SINE Alu -20 292 67 607 206 168 0 chr3 34983898 34984053 -183053105 - MLT1D LTR MaLR -324 181 1 4178 153 18 11 chr3 34984442 34985185 -183051973 + L1MA4 LINE L1 5269 6016 -284 316 146 49 0 chr3 34985189 34985271 -183051887 + L1MB4 LINE L1 6095 6180 0 21 57 0 0 chr3 34985287 34985322 -183051836 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr3 34985357 34985382 -183051776 + AT_rich Low_complexity Low_complexity 1 25 0 190 269 0 58 chr3 34986248 34986300 -183050858 - L2 LINE L2 -9 3263 3215 29 0 0 0 chr3 34986326 34986355 -183050803 + AT_rich Low_complexity Low_complexity 1 29 0 259 253 27 13 chr3 34986816 34986891 -183050267 - L1ME LINE L1 -496 5625 5550 344 325 64 16 chr3 34987020 34987208 -183049950 - L1ME LINE L1 -658 5463 5267 1039 265 99 31 chr3 34987342 34987950 -183049208 - HAL1b LINE L1 -283 1065 417 275 233 14 14 chr3 34988567 34988640 -183048518 + CT-rich Low_complexity Low_complexity 2 74 0 34 24 0 0 chr3 34989409 34989450 -183047708 + AT_rich Low_complexity Low_complexity 1 41 0 293 242 127 26 chr3 34989795 34989959 -183047199 + LTR39 LTR ERV1 1 375 -408 1037 248 26 23 chr3 34989999 34990304 -183046854 + MER4D LTR ERV1 455 894 -9 22 0 0 0 chr3 34990507 34990529 -183046629 + AT_rich Low_complexity Low_complexity 1 22 0 314 195 182 0 chr3 34992050 34992127 -183045031 - L2 LINE L2 -982 2332 2242 272 237 141 52 chr3 34992311 34992446 -183044712 - L2 LINE L2 -1222 2092 1946 180 0 0 0 chr3 34992596 34992616 -183044542 + (ATTAG)n Simple_repeat Simple_repeat 4 23 0 438 20 0 0 chr3 34992619 34992670 -183044488 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 405 304 95 46 chr3 34993085 34993268 -183043890 - MIR SINE MIR -23 185 25 424 168 2 24 chr3 34993744 34993844 -183043314 + LTR24B LTR ERV1 3 97 -368 766 258 53 42 chr3 34993882 34994242 -183042916 + LTR24B LTR ERV1 206 569 -7 416 147 67 0 chr3 34994271 34994346 -183042812 + MADE1 DNA Mariner 1 80 0 2268 88 0 7 chr3 34994374 34994670 -183042488 - AluY SINE Alu -17 294 1 1286 174 75 23 chr3 34994687 34994952 -183042206 + MLT1C LTR MaLR 5 283 -184 190 54 27 27 chr3 34994973 34995010 -183042148 + (TA)n Simple_repeat Simple_repeat 2 38 0 22 0 0 0 chr3 34995205 34995227 -183041931 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 34996651 34996673 -183040485 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 34996780 34996803 -183040355 + AT_rich Low_complexity Low_complexity 1 23 0 533 299 97 40 chr3 34996810 34997409 -183039749 + L1ME4a LINE L1 5478 6110 -11 377 288 112 21 chr3 34998624 34998857 -183038301 - L1ME4a LINE L1 -72 6049 5796 361 309 9 0 chr3 34999133 34999243 -183037915 + MIR SINE MIR 137 247 -15 2409 73 0 10 chr3 35000659 35000961 -183036197 - AluSc SINE Alu -10 299 1 629 206 120 40 chr3 35003041 35003216 -183033942 + MER5A DNA MER1_type 1 189 0 276 212 0 30 chr3 35004045 35004121 -183033037 + AluYb8 SINE Alu 132 192 -116 25 0 0 0 chr3 35004125 35004150 -183033008 + AT_rich Low_complexity Low_complexity 1 25 0 28 48 0 0 chr3 35004163 35004205 -183032953 + AT_rich Low_complexity Low_complexity 1 42 0 1850 264 65 7 chr3 35004825 35005409 -183031749 - L1ME3 LINE L1 -5 6157 5540 31446 95 7 13 chr3 35005620 35011089 -183026069 + L1PA7 LINE L1 719 6153 -1 231 242 121 0 chr3 35011255 35011346 -183025812 - L1ME4a LINE L1 0 6121 6020 484 308 96 20 chr3 35011410 35011754 -183025404 - L1ME4a LINE L1 -2124 5684 5315 377 307 86 29 chr3 35012004 35012284 -183024874 - L1ME4a LINE L1 -1776 4370 4075 24 32 0 0 chr3 35012340 35012371 -183024787 + AT_rich Low_complexity Low_complexity 1 31 0 287 340 9 19 chr3 35012491 35012672 -183024486 - L1ME4a LINE L1 -2309 3837 3656 239 310 14 0 chr3 35013306 35013377 -183023781 + MIR SINE MIR 81 152 -56 213 206 16 32 chr3 35013417 35013480 -183023678 + L2 LINE L2 3248 3309 -4 563 227 51 17 chr3 35014799 35014975 -183022183 + L1MA9 LINE L1 6083 6264 -48 26 30 0 0 chr3 35014984 35015017 -183022141 + AT_rich Low_complexity Low_complexity 1 33 0 480 104 26 0 chr3 35016189 35016266 -183020892 - MADE1 DNA Mariner 0 80 2 819 76 0 17 chr3 35016564 35016683 -183020475 - AluY SINE Alu -5 306 190 375 324 99 6 chr3 35016970 35017152 -183020006 + MIR SINE MIR 54 252 -10 305 175 50 0 chr3 35018325 35018405 -183018753 - L1ME4a LINE L1 -3 6118 6035 8666 27 1 1 chr3 35018563 35020365 -183016793 - L1PA3 LINE L1 0 6155 4354 373 337 107 36 chr3 35020424 35020676 -183016482 - L1ME LINE L1 -345 5776 5507 1820 177 92 16 chr3 35022571 35023005 -183014153 + MLT1C LTR MaLR 1 467 0 31 44 0 0 chr3 35023100 35023145 -183014013 + AT_rich Low_complexity Low_complexity 1 45 0 291 250 73 16 chr3 35023260 35023384 -183013774 - L1ME4a LINE L1 -3447 2699 2569 234 314 105 9 chr3 35024117 35024222 -183012936 + MIR3 SINE MIR 87 201 -7 379 76 0 30 chr3 35026520 35026586 -183010572 + (TA)n Simple_repeat Simple_repeat 2 65 0 204 283 183 25 chr3 35127125 35127245 -182909913 - L2 LINE L2 0 3313 3175 2068 185 4 6 chr3 35128400 35128861 -182908297 - MER89 LTR ERV1 0 559 1 29 47 0 0 chr3 35129019 35129062 -182908096 + AT_rich Low_complexity Low_complexity 1 43 0 257 311 33 8 chr3 35129362 35129484 -182907674 - L1ME LINE L1 -514 5607 5483 632 234 0 29 chr3 35129645 35129782 -182907376 - FLAM_A SINE Alu 0 133 1 1566 201 0 22 chr3 35131083 35131401 -182905757 - MLT1A1 LTR MaLR -54 311 1 24 0 0 0 chr3 35131940 35131964 -182905194 + AT_rich Low_complexity Low_complexity 1 24 0 327 279 23 12 chr3 35132011 35132097 -182905061 - L2 LINE L2 -1 3312 3226 2019 130 3 43 chr3 35132151 35132473 -182904685 + AluSx SINE Alu 2 310 -2 195 240 0 40 chr3 35132541 35132591 -182904567 - L2 LINE L2 -85 3228 3181 360 266 19 38 chr3 35133497 35133633 -182903525 + MIR SINE MIR 11 143 -65 454 222 195 41 chr3 35136431 35136652 -182900506 - MIR SINE MIR 0 262 8 22 0 0 0 chr3 35137708 35137730 -182899428 + AT_rich Low_complexity Low_complexity 1 22 0 266 250 79 0 chr3 35138671 35138747 -182898411 - MIR3 SINE MIR -11 197 116 207 0 0 0 chr3 35139403 35139426 -182897732 + (A)n Simple_repeat Simple_repeat 1 23 0 339 259 95 26 chr3 35140733 35140849 -182896309 - MIR SINE MIR -76 186 63 200 342 76 0 chr3 35140945 35141024 -182896134 - MIR SINE MIR -63 145 61 893 316 49 36 chr3 35141235 35141685 -182895473 + LTR16C LTR ERVL 36 491 0 258 383 7 21 chr3 35141703 35141844 -182895314 + MER5B DNA MER1_type 1 139 -39 198 0 0 0 chr3 35141953 35141975 -182895183 + (A)n Simple_repeat Simple_repeat 1 22 0 374 266 89 48 chr3 35142550 35142674 -182894484 - MIR SINE MIR -64 144 16 1548 175 45 29 chr3 35142920 35143298 -182893860 + MLT1B LTR MaLR 7 390 0 384 312 51 51 chr3 35144681 35144934 -182892224 - L2 LINE L2 -561 2753 2501 237 108 0 0 chr3 35144934 35144971 -182892187 + (TCTA)n Simple_repeat Simple_repeat 3 39 0 784 302 9 5 chr3 35145727 35145949 -182891209 - MIR SINE MIR -9 253 31 216 240 0 40 chr3 35146125 35146175 -182890983 - MIR SINE MIR -129 79 32 421 311 50 6 chr3 35148057 35148230 -182888928 + MIR SINE MIR 35 214 -48 1052 249 0 17 chr3 35148239 35148480 -182888678 + LTR53 LTR ERVL 269 505 -14 246 354 0 0 chr3 35149087 35149169 -182887989 + L2 LINE L2 3227 3308 -5 216 261 0 0 chr3 35150258 35150304 -182886854 + (CA)n Simple_repeat Simple_repeat 2 47 0 735 211 60 6 chr3 35151855 35152021 -182885137 + MER5B DNA MER1_type 1 175 -3 1984 146 0 0 chr3 35152058 35152339 -182884819 + AluSx SINE Alu 1 281 -31 15219 33 0 0 chr3 35152861 35154810 -182882348 - L1P LINE L1 -2532 3614 1666 7829 17 0 0 chr3 35154810 35156356 -182880802 + L1PA3 LINE L1 4609 6155 0 231 226 0 0 chr3 35156767 35156820 -182880338 + A-rich Low_complexity Low_complexity 1 53 0 314 280 0 0 chr3 35158650 35158725 -182878433 + L2 LINE L2 3229 3303 -10 205 122 24 24 chr3 35159413 35159454 -182877704 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 222 259 35 0 chr3 35161558 35161616 -182875542 + L2 LINE L2 3253 3312 -1 2479 199 33 7 chr3 35162371 35162943 -182874215 - L1MB7 LINE L1 -13 6171 5585 925 224 24 0 chr3 35164378 35164583 -182872575 + MER2 DNA MER2_type 1 210 -135 31 0 0 0 chr3 35164608 35164639 -182872519 + AT_rich Low_complexity Low_complexity 1 31 0 269 250 208 0 chr3 35165052 35165172 -182871986 + LTR67 LTR ERVL 405 549 -8 1904 150 7 10 chr3 35165904 35166204 -182870954 - AluSx SINE Alu -12 300 2 1913 200 73 43 chr3 35166409 35166899 -182870259 + MLT1D LTR MaLR 1 505 0 1063 273 50 14 chr3 35166927 35167286 -182869872 + MLT1J2 LTR MaLR 56 427 -23 201 299 196 10 chr3 35167293 35167390 -182869768 - L2 LINE L2 -2 3311 3197 462 296 110 38 chr3 35167573 35167918 -182869240 - MLT1J1 LTR MaLR -11 435 66 348 262 78 14 chr3 35168014 35168155 -182869003 - MIR SINE MIR -60 202 53 222 37 0 0 chr3 35168225 35168252 -182868906 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1452 140 183 19 chr3 35168993 35169315 -182867843 - THE1C LTR MaLR 0 375 1 234 62 0 0 chr3 35169317 35169349 -182867809 + (ATG)n Simple_repeat Simple_repeat 3 34 0 11655 42 4 1 chr3 35169940 35171457 -182865701 - L1PA5 LINE L1 -865 5281 3760 7283 37 0 0 chr3 35171457 35172351 -182864807 + L1PA5 LINE L1 5269 6163 0 1597 182 62 55 chr3 35172593 35172619 -182864539 - MLT2D LTR ERVL -7 407 383 495 0 0 0 chr3 35172619 35172674 -182864484 + (TG)n Simple_repeat Simple_repeat 2 56 0 1597 182 62 55 chr3 35172674 35172924 -182864234 - MLT2D LTR ERVL -31 383 125 2287 171 45 0 chr3 35172924 35173328 -182863830 - MSTB LTR MaLR 0 426 5 1597 182 62 55 chr3 35173328 35173451 -182863707 - MLT2D LTR ERVL -289 125 4 276 204 0 0 chr3 35173586 35173640 -182863518 - MER69 DNA AcHobo -11 2515 2462 1724 244 60 15 chr3 35173669 35174272 -182862886 + L1ME2 LINE L1 5526 6155 -9 741 228 45 65 chr3 35174286 35174668 -182862490 - MER69 DNA AcHobo -71 2455 2082 310 206 38 175 chr3 35175196 35175356 -182861802 + MIR SINE MIR 118 255 -7 218 281 70 47 chr3 35175381 35175509 -182861649 + L2 LINE L2 2232 2362 -952 1307 192 13 7 chr3 35175633 35175940 -182861218 - MER33 DNA MER1_type -22 302 1 246 311 46 60 chr3 35176563 35176714 -182860444 + L2 LINE L2 3164 3312 -1 776 271 64 27 chr3 35177240 35177535 -182859623 - MLT2F LTR ERVL -344 319 14 402 281 116 0 chr3 35177559 35177705 -182859453 - MLT1K LTR MaLR 0 588 426 3412 177 10 94 chr3 35177709 35178335 -182858823 + L1MA9 LINE L1 5163 5739 -573 500 92 0 13 chr3 35178335 35178411 -182858747 + MADE1 DNA Mariner 1 75 -5 3412 177 10 94 chr3 35178411 35178796 -182858362 + L1MA9 LINE L1 5739 6155 -157 362 329 7 26 chr3 35178802 35178957 -182858201 - MLT1K LTR MaLR -153 435 284 1054 216 113 21 chr3 35179005 35179288 -182857870 - MLT1D LTR MaLR 0 505 197 1168 234 65 60 chr3 35179370 35179528 -182857630 + MLT2B1 LTR ERVL 105 261 -259 306 73 0 0 chr3 35179528 35179569 -182857589 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 1168 234 65 60 chr3 35179569 35179776 -182857382 + MLT2B1 LTR ERVL 261 475 -45 375 23 0 0 chr3 35179776 35179820 -182857338 + (TG)n Simple_repeat Simple_repeat 1 44 0 1168 234 65 60 chr3 35179820 35179867 -182857291 + MLT2B1 LTR ERVL 475 520 0 1020 161 65 15 chr3 35179867 35180066 -182857092 - MLT1D LTR MaLR -296 209 1 243 337 0 0 chr3 35180069 35180161 -182856997 - MLT1K LTR MaLR -342 246 155 315 350 47 33 chr3 35180357 35180571 -182856587 + MIR SINE MIR 34 250 -12 235 309 164 24 chr3 35181545 35181710 -182855448 + MIR3 SINE MIR 14 201 -7 209 357 119 53 chr3 35181738 35181982 -182855176 + L2 LINE L2 2997 3256 -16 516 286 196 0 chr3 35182284 35182473 -182854685 + MIR SINE MIR 13 238 -24 69 48 0 0 chr3 35182496 35182600 -182854558 + AT_rich Low_complexity Low_complexity 1 104 0 469 323 47 25 chr3 35182802 35182917 -182854241 + MIR SINE MIR 23 134 -128 12582 33 3 0 chr3 35182917 35185194 -182851964 + L1PA4 LINE L1 3869 6148 -7 469 323 47 25 chr3 35185194 35185313 -182851845 + MIR SINE MIR 134 262 0 190 336 123 16 chr3 35186125 35186247 -182850911 - MIR SINE MIR -56 152 18 400 244 177 55 chr3 35186665 35186829 -182850329 - MER5A DNA MER1_type -5 184 1 222 304 29 0 chr3 35187117 35187186 -182849972 + L2 LINE L2 2725 2795 -519 476 275 211 31 chr3 35187187 35187547 -182849611 - MLT1J1 LTR MaLR -2 444 20 452 348 50 0 chr3 35187865 35188006 -182849152 + L2 LINE L2 3121 3268 -4 1085 112 5 0 chr3 35188006 35188210 -182848948 + (GGAA)n Simple_repeat Simple_repeat 1 204 0 602 178 5 38 chr3 35188211 35188396 -182848762 + GA-rich Low_complexity Low_complexity 2 180 0 436 226 155 77 chr3 35188633 35188801 -182848357 - MER5A DNA MER1_type 0 189 9 317 354 90 0 chr3 35190207 35190351 -182846807 - MIR SINE MIR -79 183 27 553 203 83 8 chr3 35192281 35192414 -182844744 - MER3 DNA MER1_type -66 143 1 649 332 13 8 chr3 35193311 35193546 -182843612 - MIR SINE MIR -2 260 25 1176 208 118 12 chr3 35194230 35194485 -182842673 + AluJo SINE Alu 7 288 -24 2306 64 4 0 chr3 35194495 35194817 -182842341 + AluY SINE Alu 1 323 0 369 0 0 0 chr3 35195065 35195106 -182842052 + (CA)n Simple_repeat Simple_repeat 1 41 0 198 273 5 41 chr3 35195272 35195372 -182841786 + MIR SINE MIR 49 141 -67 2146 117 0 7 chr3 35196510 35196819 -182840339 + AluY SINE Alu 1 307 -4 1004 88 61 0 chr3 35196819 35196966 -182840192 + AluSg/x SINE Alu 132 287 -23 2086 116 0 0 chr3 35196968 35197281 -182839877 + AluSq SINE Alu 1 313 0 245 356 0 0 chr3 35197744 35197848 -182839310 + A-rich Low_complexity Low_complexity 2 105 0 876 227 92 21 chr3 35198776 35199102 -182838056 + L1ME2 LINE L1 5807 6155 -9 216 67 0 0 chr3 35199119 35199149 -182838009 + (CA)n Simple_repeat Simple_repeat 2 31 0 1744 263 21 23 chr3 35199173 35199790 -182837368 + L1ME3A LINE L1 5527 6142 -28 317 256 120 15 chr3 35200522 35200655 -182836503 - MLT1J LTR MaLR -46 465 319 5121 136 28 0 chr3 35200961 35201905 -182835253 + L1PB4 LINE L1 5169 6137 -19 23 54 0 0 chr3 35202076 35202113 -182835045 + AT_rich Low_complexity Low_complexity 1 37 0 6108 133 61 34 chr3 35202241 35203924 -182833234 - L1MA1 LINE L1 -1 7720 5971 2258 121 0 0 chr3 35203924 35204229 -182832929 + AluSx SINE Alu 1 305 -7 6108 133 61 34 chr3 35204229 35204686 -182832472 - L1MA1 LINE L1 -1750 5971 5528 6673 198 27 15 chr3 35204686 35205293 -182831865 - L1MA1 LINE L1 -2271 5294 4696 2131 116 7 20 chr3 35205293 35205594 -182831564 - AluSg SINE Alu -13 297 1 6673 198 27 15 chr3 35205594 35205630 -182831528 - L1MA1 LINE L1 -2869 4696 4662 2479 80 0 0 chr3 35205630 35205941 -182831217 - AluY SINE Alu 0 311 1 6673 198 27 15 chr3 35205941 35207455 -182829703 - L1MA1 LINE L1 -2903 4662 3110 40283 40 21 2 chr3 35207455 35213487 -182823671 + L1PA3 LINE L1 1 6152 -3 16836 167 49 10 chr3 35213514 35216511 -182820647 - L1MA1 LINE L1 -4438 3127 16 369 309 52 0 chr3 35219021 35219157 -182818001 - L2 LINE L2 0 3313 3171 962 98 33 20 chr3 35219282 35219435 -182817723 - L1PA15 LINE L1 0 6165 6011 1039 255 28 0 chr3 35219454 35219709 -182817449 - L2 LINE L2 -774 2540 2279 209 140 200 0 chr3 35219794 35219844 -182817314 - MIR SINE MIR -110 152 93 925 258 28 9 chr3 35219848 35220065 -182817093 + MER58A DNA MER1_type 1 221 -3 233 330 11 11 chr3 35220073 35220161 -182816997 - MIR SINE MIR -172 90 3 21 36 0 0 chr3 35220192 35220220 -182816938 + AT_rich Low_complexity Low_complexity 1 28 0 214 240 0 130 chr3 35220892 35220992 -182816166 + MIR SINE MIR 168 254 -8 1767 187 82 6 chr3 35222472 35222815 -182814343 + MLT1D LTR MaLR 22 390 -115 1018 254 36 54 chr3 35222837 35223274 -182813884 + MLT1-int LTR MaLR 962 1714 -21 339 25 0 0 chr3 35223508 35223548 -182813610 + (TG)n Simple_repeat Simple_repeat 1 40 0 474 350 91 25 chr3 35224839 35225202 -182811956 + L2 LINE L2 2205 2591 -723 208 315 0 0 chr3 35225361 35225434 -182811724 + (TA)n Simple_repeat Simple_repeat 1 73 0 579 354 16 24 chr3 35225665 35225919 -182811239 - MIR SINE MIR -8 254 3 370 316 0 0 chr3 35225970 35226068 -182811090 - L2 LINE L2 -24 3289 3192 310 337 85 30 chr3 35226075 35226345 -182810813 - L1MC/D LINE L1 -2007 5801 5517 970 266 106 66 chr3 35226503 35228022 -182809136 + L1ME3A LINE L1 2738 4196 -1974 7302 40 8 0 chr3 35228022 35228952 -182808206 + L1PA4 LINE L1 5218 6154 -1 970 266 106 66 chr3 35228952 35229761 -182807397 + L1ME3A LINE L1 4196 6099 -71 824 197 10 42 chr3 35232809 35233002 -182804156 - L1MD2 LINE L1 -474 5885 5699 236 296 11 45 chr3 35233279 35233367 -182803791 + L2 LINE L2 3229 3313 0 400 274 15 37 chr3 35233628 35233763 -182803395 - LTR45 LTR ERV1 -2 523 392 27004 81 5 4 chr3 35234516 35238276 -182798882 - L1P LINE L1 -734 5420 1658 5702 49 3 6 chr3 35238276 35238984 -182798174 + L1PA6 LINE L1 5443 6148 -6 301 337 38 51 chr3 35239022 35239470 -182797688 + L1ME3 LINE L1 23 464 -5959 556 293 78 33 chr3 35239790 35240805 -182796353 + L1ME3 LINE L1 1156 2392 -4549 1722 222 79 54 chr3 35240805 35242012 -182795146 + L1ME3 LINE L1 5488 6726 -233 385 257 0 99 chr3 35242043 35242195 -182794963 + L1ME3 LINE L1 6814 6950 -7 1211 229 37 65 chr3 35242218 35242619 -182794539 - MLT1B LTR MaLR 0 390 1 5699 119 0 0 chr3 35244054 35245058 -182792100 - L1PB2 LINE L1 0 6151 5147 322 59 98 0 chr3 35245058 35245109 -182792049 + MADE1 DNA Mariner 1 56 -24 313 267 0 0 chr3 35245121 35245207 -182791951 - L1PB2 LINE L1 -999 5147 5062 3930 147 36 28 chr3 35245225 35246630 -182790528 + LTR28-int LTR ERV1 632 4818 -399 2351 124 10 10 chr3 35246612 35246999 -182790159 + LTR28-int LTR ERV1 4163 4549 -2988 * 11158 124 13 17 chr3 35246996 35247377 -182789781 + LTR28-int LTR ERV1 2250 2631 -2586 3539 88 47 4 chr3 35247377 35247867 -182789291 - MER9 LTR ERVK 0 511 1 11158 124 13 17 chr3 35247867 35249374 -182787784 + LTR28-int LTR ERV1 2631 5058 -159 2436 169 30 82 chr3 35249398 35250119 -182787039 + LTR28 LTR ERV1 2 636 0 345 326 103 34 chr3 35250130 35250363 -182786795 - HAL1 LINE L1 -1841 666 418 21 71 0 0 chr3 35250390 35250432 -182786726 + AT_rich Low_complexity Low_complexity 1 42 0 401 173 387 40 chr3 35250487 35250660 -182786498 - AluJo SINE Alu -109 193 72 347 323 75 0 chr3 35250713 35250914 -182786244 - HAL1 LINE L1 -2282 225 10 10222 220 55 11 chr3 35251151 35254721 -182782437 + L1PA13 LINE L1 1 3739 -3058 21 0 0 0 chr3 35254990 35255011 -182782147 + AT_rich Low_complexity Low_complexity 1 21 0 231 36 0 0 chr3 35255983 35256011 -182781147 + (GA)n Simple_repeat Simple_repeat 2 29 0 23 68 0 0 chr3 35256113 35256157 -182781001 + AT_rich Low_complexity Low_complexity 1 44 0 27 0 0 0 chr3 35256641 35256668 -182780490 + AT_rich Low_complexity Low_complexity 1 27 0 354 295 90 18 chr3 35256809 35256975 -182780183 + L2 LINE L2 2709 2886 -428 1317 247 121 50 chr3 35256977 35257531 -182779627 + MLT1E LTR MaLR 1 593 0 626 124 53 9 chr3 35257599 35257712 -182779446 - L1PA11 LINE L1 -2 6172 6055 243 307 43 36 chr3 35257727 35257867 -182779291 + L2 LINE L2 3008 3148 -165 237 203 17 0 chr3 35257897 35257956 -182779202 - HAL1 LINE L1 -4 2503 2444 2383 116 11 8 chr3 35258302 35258673 -182778485 + L1PB1 LINE L1 5780 6151 0 2556 48 3 10 chr3 35258709 35259022 -182778136 + AluY SINE Alu 1 311 0 361 337 60 18 chr3 35260476 35260642 -182776516 - MIR3 SINE MIR -6 202 30 434 337 161 20 chr3 35260921 35261407 -182775751 - L2 LINE L2 -106 3207 2654 431 303 62 15 chr3 35261947 35262142 -182775016 - MIR SINE MIR -31 231 28 204 97 0 0 chr3 35263424 35263455 -182773703 + (TAGA)n Simple_repeat Simple_repeat 3 33 0 206 300 100 33 chr3 35263998 35264118 -182773040 - MIR SINE MIR -34 228 101 329 299 198 38 chr3 35264347 35264504 -182772654 - MIR SINE MIR -49 213 32 241 227 187 13 chr3 35264618 35264693 -182772465 - MIR SINE MIR -100 162 75 251 229 72 6 chr3 35265743 35265909 -182771249 + (TA)n Simple_repeat Simple_repeat 2 178 0 205 295 137 32 chr3 35266051 35266146 -182771012 - MIR SINE MIR -123 139 35 2672 79 3 0 chr3 35266200 35266555 -182770603 - L1PA7 LINE L1 -3 6151 5796 2390 151 63 14 chr3 35267160 35267604 -182769554 + L1PB4 LINE L1 5679 6144 -12 266 340 11 75 chr3 35267613 35267704 -182769454 - MIR SINE MIR -38 224 129 2889 10 0 0 chr3 35267704 35268018 -182769140 - AluYb8 SINE Alu -4 314 1 266 340 11 75 chr3 35268018 35268151 -182769007 - MIR SINE MIR -133 129 17 315 0 0 0 chr3 35268151 35268186 -182768972 + (CA)n Simple_repeat Simple_repeat 1 35 0 458 257 28 0 chr3 35268232 35268341 -182768817 + MER5B DNA MER1_type 66 177 -1 180 0 0 0 chr3 35268351 35268371 -182768787 + (CAT)n Simple_repeat Simple_repeat 2 21 0 893 253 181 39 chr3 35269656 35270064 -182767094 - L2 LINE L2 0 3313 2848 23 0 0 0 chr3 35270113 35270136 -182767022 + AT_rich Low_complexity Low_complexity 1 23 0 1387 77 22 17 chr3 35270136 35270317 -182766841 + AluY SINE Alu 106 287 -24 23 0 0 0 chr3 35270317 35270340 -182766818 + AT_rich Low_complexity Low_complexity 1 23 0 302 346 27 53 chr3 35271023 35271211 -182765947 + MIR SINE MIR 37 219 -43 940 288 93 68 chr3 35271377 35272134 -182765024 + L2 LINE L2 2507 3304 -9 2129 115 6 10 chr3 35272418 35272731 -182764427 + AluSx SINE Alu 1 312 0 3130 273 65 38 chr3 35273219 35274756 -182762402 - L1MEc LINE L1 -4306 2090 512 1548 279 77 19 chr3 35274797 35275327 -182761831 - L1MEc LINE L1 -5754 642 82 2444 57 14 0 chr3 35275578 35275875 -182761283 + AluY SINE Alu 1 301 -10 303 306 138 20 chr3 35276449 35276753 -182760405 + L1ME4a LINE L1 5561 5900 -221 229 206 48 0 chr3 35277251 35277314 -182759844 - MER96B DNA MER1_type? -32 385 320 * 418 246 26 0 chr3 35277309 35277423 -182759735 + MER96B DNA MER1_type? 300 416 -1 1881 135 35 7 chr3 35277589 35277871 -182759287 - AluSx SINE Alu -22 290 1 329 242 188 8 chr3 35278874 35279002 -182758156 - L1ME3A LINE L1 -5 6165 6015 1871 186 18 42 chr3 35279022 35279074 -182758084 + MLT2C1 LTR ERVL 21 73 -324 1873 163 3 0 chr3 35279074 35279368 -182757790 + AluSx SINE Alu 3 297 -15 1871 186 18 42 chr3 35279368 35279658 -182757500 + MLT2C1 LTR ERVL 73 356 -41 378 61 0 0 chr3 35279658 35279707 -182757451 + (TG)n Simple_repeat Simple_repeat 2 50 0 1871 186 18 42 chr3 35279707 35279749 -182757409 + MLT2C1 LTR ERVL 356 397 0 366 264 101 34 chr3 35279857 35280035 -182757123 - MIR SINE MIR -4 258 69 186 345 0 0 chr3 35280399 35280457 -182756701 - MIR3 SINE MIR -3 205 148 199 308 117 42 chr3 35280515 35280635 -182756523 - MIR SINE MIR -24 238 110 22 35 0 0 chr3 35281610 35281639 -182755519 + AT_rich Low_complexity Low_complexity 1 29 0 244 277 134 8 chr3 35282024 35282143 -182755015 - MIR SINE MIR -30 232 99 208 263 92 13 chr3 35285958 35286034 -182751124 - MIR SINE MIR -93 169 88 386 301 301 0 chr3 35287704 35288006 -182749152 - LTR33A LTR ERVL 0 523 131 230 184 41 0 chr3 35288605 35288654 -182748504 + LTR33A LTR ERVL 467 517 -6 1742 130 18 58 chr3 35288833 35289211 -182747947 + MER67C LTR ERV1 1 388 -243 208 243 14 40 chr3 35289235 35289309 -182747849 + L2 LINE L2 235 306 -3008 319 171 79 13 chr3 35289317 35289393 -182747765 + MER67D LTR ERV1 434 514 0 1103 283 56 19 chr3 35289797 35290207 -182746951 + LTR16A LTR ERVL 26 450 0 257 262 143 62 chr3 35290288 35290498 -182746660 - MIR SINE MIR 0 262 36 224 346 69 31 chr3 35291092 35291222 -182745936 - L2 LINE L2 0 3272 3138 742 219 6 0 chr3 35291292 35291461 -182745697 - L1 LINE L1 -877 5269 5100 188 309 87 47 chr3 35291505 35291654 -182745504 - L2 LINE L2 -228 3044 2890 401 268 10 0 chr3 35291760 35291857 -182745301 - L2 LINE L2 0 3272 3175 611 225 59 6 chr3 35291922 35292091 -182745067 + MER5B DNA MER1_type 1 178 0 739 213 8 0 chr3 35292099 35292226 -182744932 - MER5A DNA MER1_type 0 189 62 4880 160 20 12 chr3 35292226 35293360 -182743798 - L1PB4 LINE L1 -1 6155 5006 1318 201 81 0 chr3 35293360 35293658 -182743500 + L1PB4 LINE L1 4667 4988 -1158 334 261 0 0 chr3 35293659 35293728 -182743430 - MER5A DNA MER1_type -116 73 5 433 263 254 29 chr3 35294002 35294207 -182742951 + MIR SINE MIR 9 259 -3 21 82 0 0 chr3 35295222 35295271 -182741887 + AT_rich Low_complexity Low_complexity 1 49 0 447 239 194 39 chr3 35295477 35295657 -182741501 - MIR SINE MIR -8 254 47 4261 189 53 5 chr3 35295663 35296771 -182740387 - L1MB8 LINE L1 0 6178 5021 12140 99 77 7 chr3 35296784 35297035 -182740123 - L1MA1 LINE L1 -27 6277 6045 672 97 0 26 chr3 35297035 35297149 -182740009 - L1MA1 LINE L1 0 6302 6192 12140 99 77 7 chr3 35297149 35299798 -182737360 - L1MA1 LINE L1 -259 6045 3161 7511 28 2 0 chr3 35299798 35301388 -182735770 + L1PA4 LINE L1 4557 6148 -7 320 322 0 9 chr3 35301392 35301507 -182735651 + MIR SINE MIR 149 262 0 186 336 123 16 chr3 35302319 35302441 -182734717 - MIR SINE MIR -56 152 18 381 250 177 55 chr3 35302859 35303023 -182734135 - MER5A DNA MER1_type -5 184 1 219 304 29 0 chr3 35303311 35303380 -182733778 + L2 LINE L2 2725 2795 -519 593 275 211 31 chr3 35303381 35303741 -182733417 - MLT1J1 LTR MaLR -2 444 20 456 336 31 0 chr3 35304072 35304200 -182732958 + L2 LINE L2 3137 3268 -4 1085 112 5 0 chr3 35304200 35304404 -182732754 + (GGAA)n Simple_repeat Simple_repeat 1 204 0 591 183 11 33 chr3 35304405 35304585 -182732573 + GA-rich Low_complexity Low_complexity 2 177 0 227 79 26 0 chr3 35304585 35304623 -182732535 + (GGAA)n Simple_repeat Simple_repeat 3 41 0 433 226 155 77 chr3 35304828 35304996 -182732162 - MER5A DNA MER1_type 0 189 9 315 354 90 0 chr3 35306404 35306548 -182730610 - MIR SINE MIR -79 183 27 235 289 21 41 chr3 35308188 35308285 -182728873 - L2 LINE L2 -243 3029 2935 192 40 0 0 chr3 35308577 35308602 -182728556 + (TTG)n Simple_repeat Simple_repeat 2 26 0 222 378 25 25 chr3 35309281 35309400 -182727758 - L2 LINE L2 0 3272 3154 258 315 8 69 chr3 35309616 35309746 -182727412 - MIR3 SINE MIR -4 204 83 1693 209 73 104 chr3 35309888 35310111 -182727047 + MLT1F1 LTR MaLR 5 233 -334 297 0 0 0 chr3 35310111 35310144 -182727014 + (CA)n Simple_repeat Simple_repeat 1 33 0 1693 209 73 104 chr3 35310144 35310412 -182726746 + MLT1F1 LTR MaLR 233 481 -86 1872 167 0 3 chr3 35311772 35312077 -182725081 + AluJo SINE Alu 1 304 -8 1520 249 7 27 chr3 35312122 35312340 -182724818 - L1ME1 LINE L1 -5 6161 5953 1804 203 103 61 chr3 35312340 35312826 -182724332 - MLT1F1 LTR MaLR 0 567 54 1826 162 14 3 chr3 35312826 35313122 -182724036 + AluSx SINE Alu 1 299 -13 1804 203 103 61 chr3 35313122 35313178 -182723980 - MLT1F1 LTR MaLR -513 54 2 1520 249 7 27 chr3 35313178 35313372 -182723786 - L1ME1 LINE L1 -213 5953 5757 29324 125 16 75 chr3 35313438 35319318 -182717840 + L1P3 LINE L1 12 5530 -624 * 43103 46 3 3 chr3 35319287 35325432 -182711726 + L1PA3 LINE L1 7 6150 -5 183 42 0 0 chr3 35325439 35325463 -182711695 + (TAAAAA)n Simple_repeat Simple_repeat 2 25 0 4962 75 10 1 chr3 35325466 35326137 -182711021 + L1PA7 LINE L1 5476 6152 -2 29 84 0 0 chr3 35329481 35329552 -182707606 + AT_rich Low_complexity Low_complexity 1 71 0 371 330 60 14 chr3 35329794 35330012 -182707146 - L1M4 LINE L1 -2995 3151 2924 24 67 0 0 chr3 35330227 35330272 -182706886 + AT_rich Low_complexity Low_complexity 1 45 0 198 209 0 0 chr3 35330413 35330456 -182706702 + (TA)n Simple_repeat Simple_repeat 1 43 0 1165 210 102 67 chr3 35330650 35331083 -182706075 + L1M4 LINE L1 4680 5127 -1019 451 288 132 69 chr3 35331083 35331402 -182705756 + MLT1I LTR MaLR 71 409 0 21 82 0 0 chr3 35333269 35333318 -182703840 + AT_rich Low_complexity Low_complexity 1 49 0 447 239 194 39 chr3 35333524 35333704 -182703454 - MIR SINE MIR -8 254 47 4216 190 54 5 chr3 35333710 35334817 -182702341 - L1MB8 LINE L1 0 6178 5021 12140 99 77 7 chr3 35334830 35335081 -182702077 - L1MA1 LINE L1 -27 6277 6045 672 97 0 26 chr3 35335081 35335195 -182701963 - L1MA1 LINE L1 0 6302 6192 12140 99 77 7 chr3 35335195 35337844 -182699314 - L1MA1 LINE L1 -259 6045 3161 7244 34 7 7 chr3 35337844 35339443 -182697715 + L1PA4 LINE L1 4557 6155 0 8721 195 18 12 chr3 35339462 35342447 -182694711 + L1PA16 LINE L1 3165 6166 0 299 266 18 18 chr3 35342997 35343106 -182694052 - Charlie8 DNA MER1_type -1930 487 379 392 327 84 5 chr3 35343428 35343630 -182693528 + Charlie8 DNA MER1_type 1 218 -2199 192 330 120 65 chr3 35343665 35343865 -182693293 + L2 LINE L2 3062 3272 0 257 277 0 0 chr3 35343899 35343964 -182693194 - L2 LINE L2 -7 3265 3201 462 180 0 0 chr3 35344416 35344505 -182692653 + L1MA10 LINE L1 6232 6320 -14 2633 192 20 14 chr3 35344514 35345008 -182692150 - MLT2B1 LTR ERVL -23 497 1 239 360 0 0 chr3 35345035 35345124 -182692034 - MIR SINE MIR -6 256 168 258 105 0 0 chr3 35345223 35345261 -182691897 + (GGGA)n Simple_repeat Simple_repeat 1 38 0 21 0 0 0 chr3 35346226 35346247 -182690911 + AT_rich Low_complexity Low_complexity 1 21 0 344 290 92 23 chr3 35348493 35348624 -182688534 - MIR SINE MIR -21 241 102 3498 151 7 4 chr3 35349390 35350296 -182686862 + L1MC1 LINE L1 5381 6332 -1 530 271 129 44 chr3 35351524 35351819 -182685339 + MER5C DNA MER1_type 4 323 -1 350 309 26 78 chr3 35353970 35354161 -182682997 + MIR SINE MIR 50 230 -32 18615 38 2 5 chr3 35355155 35358231 -182678927 - L1PA3 LINE L1 -13 6142 3078 280 0 24 24 chr3 35359349 35359390 -182677768 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 180 178 22 22 chr3 35359416 35359461 -182677697 + MIR SINE MIR 97 141 -67 2080 162 71 2 chr3 35360313 35360709 -182676449 + MER95 LTR ERV 9 431 0 623 154 0 18 chr3 35361260 35361370 -182675788 - L1PB4 LINE L1 0 6156 6049 602 295 136 45 chr3 35361406 35361791 -182675367 - HAL1 LINE L1 -700 1807 1458 2107 119 57 23 chr3 35361791 35362143 -182675015 - THE1B LTR MaLR 0 364 1 602 295 136 45 chr3 35362143 35362303 -182674855 - HAL1 LINE L1 -1049 1458 1314 1113 166 57 81 chr3 35362303 35362635 -182674523 - MER33 DNA MER1_type 0 324 1 602 295 136 45 chr3 35362635 35363014 -182674144 - HAL1 LINE L1 -1193 1314 798 671 241 75 10 chr3 35363372 35363571 -182673587 - LTR16A1 LTR ERVL -13 444 233 267 258 82 10 chr3 35363555 35363652 -182673506 - LTR16A1 LTR ERVL -352 105 2 * 290 250 109 0 chr3 35363652 35363744 -182673414 - HAL1 LINE L1 -2398 109 8 336 312 116 21 chr3 35364284 35364473 -182672685 - MIR SINE MIR -36 226 20 1641 125 106 4 chr3 35365418 35365682 -182671476 - AluSx SINE Alu -21 291 1 1943 47 0 0 chr3 35365899 35366155 -182671003 - L1P LINE L1 -2683 3463 3208 5003 35 7 3 chr3 35366155 35366753 -182670405 + L1PA5 LINE L1 5548 6153 -1 1450 211 110 15 chr3 35366776 35367175 -182669983 + MER110 LTR ERV1 1 437 -54 462 353 49 0 chr3 35367216 35367420 -182669738 - MIR SINE MIR -17 245 32 341 300 93 34 chr3 35367848 35368568 -182668590 - L1ME LINE L1 -4639 2186 1273 323 317 45 57 chr3 35368576 35368822 -182668336 - L1ME LINE L1 -5295 1339 1097 315 0 0 0 chr3 35369178 35369213 -182667945 + (A)n Simple_repeat Simple_repeat 1 35 0 31 0 0 0 chr3 35369304 35369335 -182667823 + AT_rich Low_complexity Low_complexity 1 31 0 2254 107 0 0 chr3 35370741 35371039 -182666119 - AluSx SINE Alu -13 299 2 912 223 122 14 chr3 35371159 35371446 -182665712 - L1ME3A LINE L1 -9 6161 5844 280 244 52 37 chr3 35371478 35371613 -182665545 + MER113 DNA MER1_type? 1 137 -384 25 65 0 0 chr3 35371651 35371697 -182665461 + AT_rich Low_complexity Low_complexity 1 46 0 210 299 30 0 chr3 35372415 35372482 -182664676 + MIR SINE MIR 72 140 -68 1757 284 95 36 chr3 35372905 35374375 -182662783 + L1ME1 LINE L1 320 1853 -4227 7510 34 0 0 chr3 35374375 35375731 -182661427 + L1PA4 LINE L1 4781 6153 -2 1757 284 95 36 chr3 35375731 35376088 -182661070 + L1ME1 LINE L1 1853 2188 -3892 2337 254 135 17 chr3 35376395 35377611 -182659547 + L1ME1 LINE L1 2278 3636 -2444 2037 258 58 27 chr3 35377715 35378389 -182658769 + L1ME1 LINE L1 5405 6099 -1 275 310 0 0 chr3 35378709 35378809 -182658349 + L1ME LINE L1 3265 3364 -2716 851 272 25 11 chr3 35378961 35379240 -182657918 + L1ME LINE L1 3595 3877 -2203 318 344 27 36 chr3 35379697 35379918 -182657240 + L1ME LINE L1 5389 5607 -448 28216 132 21 51 chr3 35380005 35381482 -182655676 + L1PA8 LINE L1 2 1522 -4650 2119 139 0 0 chr3 35381482 35381784 -182655374 + AluSc SINE Alu 1 302 -7 28216 132 21 51 chr3 35381784 35386684 -182650474 + L1PA8 LINE L1 1522 6170 -2 626 122 9 0 chr3 35386696 35386803 -182650355 + (GGAA)n Simple_repeat Simple_repeat 2 109 0 234 250 0 26 chr3 35386957 35387033 -182650125 + L1ME LINE L1 5757 5830 -225 1452 242 45 45 chr3 35387054 35387559 -182649599 + MLT1D LTR MaLR 1 505 0 239 219 0 0 chr3 35387582 35387623 -182649535 - MER8 DNA MER2_type 0 239 199 2521 159 58 4 chr3 35387623 35388075 -182649083 - MER66A LTR ERV1 0 478 3 13790 136 7 18 chr3 35388079 35390218 -182646940 - MER66A-int LTR ERV1 -6 6670 4557 346 193 59 160 chr3 35390218 35390337 -182646821 - MER4D LTR ERV1 -744 159 53 2789 172 45 41 chr3 35390337 35391316 -182645842 - MER66A-int LTR ERV1 -2224 4452 3149 463 146 0 0 chr3 35391317 35391399 -182645759 - MER66-int LTR ERV1 -3226 3450 3369 3716 67 2 6 chr3 35391399 35391889 -182645269 - L1PA6 LINE L1 -1 6153 5666 36636 91 10 17 chr3 35392913 35399099 -182638059 - L1PA3 LINE L1 -3 6152 11 4571 207 53 48 chr3 35399287 35400313 -182636845 - MER66-int LTR ERV1 -3310 3366 2336 2655 198 54 1 chr3 35400309 35400845 -182636313 - MER66-int LTR ERV1 -4515 2161 1562 * 1080 193 20 71 chr3 35400865 35401119 -182636039 - MER66A LTR ERV1 -237 241 1 1997 182 20 10 chr3 35401121 35401511 -182635647 + Tigger2a DNA MER2_type 41 434 0 25 65 0 0 chr3 35401583 35401629 -182635529 + AT_rich Low_complexity Low_complexity 1 46 0 26 0 0 0 chr3 35401672 35401698 -182635460 + AT_rich Low_complexity Low_complexity 1 26 0 3039 136 131 25 chr3 35402275 35402840 -182634318 + MER51A LTR ERV1 1 625 -9 747 219 0 83 chr3 35403256 35403461 -182633697 + MER5A DNA MER1_type 1 188 -1 874 225 48 0 chr3 35403843 35404030 -182633128 - MIR SINE MIR -66 196 1 388 295 109 36 chr3 35405199 35405392 -182631766 + MLT1J2 LTR MaLR 240 446 -4 1948 110 0 57 chr3 35405484 35405783 -182631375 + AluY SINE Alu 1 282 -29 808 19 37 0 chr3 35405788 35405896 -182631262 + (GAAA)n Simple_repeat Simple_repeat 3 114 0 3399 209 70 50 chr3 35406219 35407489 -182629669 - L1ME2 LINE L1 -10 6154 4855 662 243 21 16 chr3 35408375 35408564 -182628594 + L1MC5 LINE L1 7048 7237 -724 24 0 0 0 chr3 35408715 35408739 -182628419 + AT_rich Low_complexity Low_complexity 1 24 0 1220 228 36 65 chr3 35408743 35409356 -182627802 + L1MC5 LINE L1 7316 7910 -51 333 278 42 7 chr3 35410476 35410620 -182626538 + MER103 DNA DNA 11 159 -7 259 317 12 0 chr3 35410668 35410750 -182626408 - MIR3 SINE MIR -49 159 77 336 279 66 22 chr3 35412063 35412199 -182624959 + MER91A DNA MER1_type 1 142 -54 2161 212 16 18 chr3 35412656 35413157 -182624001 - MLT1D LTR MaLR -5 500 1 256 254 46 101 chr3 35413365 35413582 -182623576 - L1MC4 LINE L1 -9 8033 7829 377 215 99 84 chr3 35413626 35413817 -182623341 - L1ME2 LINE L1 -20 6144 5951 294 321 147 9 chr3 35414241 35414459 -182622699 + MIR SINE MIR 13 260 -2 393 317 44 11 chr3 35415382 35415562 -182621596 + LTR16C LTR ERVL 306 491 0 1009 306 70 25 chr3 35415570 35416069 -182621089 + L2 LINE L2 2554 3062 -251 7421 39 0 2 chr3 35416263 35417386 -182619772 + L1PA4 LINE L1 5032 6152 -3 1616 188 0 50 chr3 35417427 35417746 -182619412 + AluJo SINE Alu 1 303 -9 27 49 0 0 chr3 35417811 35417852 -182619306 + AT_rich Low_complexity Low_complexity 1 41 0 263 232 37 73 chr3 35417895 35418059 -182619099 + L1ME LINE L1 5547 5704 -417 2564 188 43 37 chr3 35419087 35419711 -182617447 - MER92B LTR ERV1 -8 628 1 1745 198 61 0 chr3 35419728 35420071 -182617087 - MLT1A1 LTR MaLR -1 364 1 622 263 202 25 chr3 35420085 35420442 -182616716 + MLT1J2 LTR MaLR 1 420 -30 225 283 0 0 chr3 35420524 35420577 -182616581 + MIR SINE MIR 210 262 0 220 302 103 32 chr3 35421406 35421532 -182615626 + MIR SINE MIR 20 154 -108 316 280 59 17 chr3 35421670 35421788 -182615370 - L2 LINE L2 -2 3311 3189 1252 256 116 11 chr3 35421818 35422197 -182614961 - LTR16C LTR ERVL -2 489 71 305 324 90 7 chr3 35422510 35422655 -182614503 - MIR SINE MIR -1 261 105 271 256 103 8 chr3 35423301 35423418 -182613740 - MIR SINE MIR -16 246 119 279 204 0 0 chr3 35424892 35424941 -182612217 - MIR3 SINE MIR -11 197 149 271 354 71 0 chr3 35425591 35425704 -182611454 - MIR SINE MIR -64 144 24 218 289 59 59 chr3 35426668 35426803 -182610355 - MIR SINE MIR -18 244 110 208 234 36 108 chr3 35426856 35426967 -182610191 - L2 LINE L2 -56 3257 3155 491 290 53 30 chr3 35428725 35428894 -182608264 + MIR SINE MIR 3 175 -87 23 33 0 0 chr3 35429208 35429238 -182607920 + AT_rich Low_complexity Low_complexity 1 30 0 1300 202 46 49 chr3 35429258 35429624 -182607534 - MLT1A1 LTR MaLR 0 365 1 7247 53 0 0 chr3 35429853 35430812 -182606346 - L1PA4 LINE L1 -4099 2047 1089 * 26147 32 2 5 chr3 35430809 35434912 -182602246 + L1PA4 LINE L1 2062 6152 -3 507 263 79 41 chr3 35435217 35435562 -182601596 - LTR18B LTR ERVL 0 614 1 242 340 123 0 chr3 35435565 35435727 -182601431 + L2 LINE L2 2472 2653 -661 592 162 188 0 chr3 35435733 35435850 -182601308 - FLAM_C SINE Alu -4 139 1 2134 203 22 18 chr3 35436073 35436521 -182600637 - LTR32 LTR ERVL 0 471 22 296 218 58 23 chr3 35436764 35436851 -182600307 + MLT1J2 LTR MaLR 361 450 0 659 298 110 21 chr3 35437056 35437482 -182599676 + LTR16B LTR ERVL 1 464 0 243 295 105 0 chr3 35437515 35437610 -182599548 - MIR SINE MIR -76 186 82 234 294 101 73 chr3 35437747 35437856 -182599302 + L2 LINE L2 3123 3234 -38 297 0 0 0 chr3 35438624 35438657 -182598501 + (A)n Simple_repeat Simple_repeat 1 33 0 962 190 42 118 chr3 35438711 35438948 -182598210 + AluJo SINE Alu 61 279 -33 311 0 26 0 chr3 35438948 35438987 -182598171 + (TAAAA)n Simple_repeat Simple_repeat 1 40 0 821 239 16 5 chr3 35439740 35439924 -182597234 + MER5A DNA MER1_type 2 187 -2 3950 67 0 2 chr3 35440285 35440805 -182596353 + LTR17 LTR ERV1 262 780 0 24499 48 4 7 chr3 35440860 35442777 -182594381 + HERV17 LTR ERV1 1953 3859 -4767 2240 62 66 3 chr3 35442777 35443065 -182594093 + AluY SINE Alu 1 306 -5 24499 48 4 7 chr3 35443065 35444268 -182592890 + HERV17 LTR ERV1 3859 5064 -3562 9951 53 0 23 chr3 35444262 35445586 -182591572 + HERV17 LTR ERV1 6902 8195 -431 * 605 102 0 31 chr3 35445581 35445679 -182591479 + HERV17 LTR ERV1 8161 8255 -371 * 6164 71 18 6 chr3 35445679 35446501 -182590657 + L1PA7 LINE L1 5310 6141 -13 614 13 0 13 chr3 35446504 35446580 -182590578 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 452 309 93 10 chr3 35446688 35446882 -182590276 - MIR SINE MIR -51 211 2 329 248 271 43 chr3 35447163 35447421 -182589737 + MER113 DNA MER1_type? 171 487 -34 252 241 0 0 chr3 35448503 35448557 -182588601 - MLT1H LTR MaLR 0 549 496 452 311 63 60 chr3 35448594 35448896 -182588262 - MLT1H LTR MaLR -197 352 50 333 47 0 0 chr3 35449330 35449373 -182587785 + MADE1 DNA Mariner 3 45 -35 22 35 0 0 chr3 35449804 35449833 -182587325 + AT_rich Low_complexity Low_complexity 1 29 0 2166 120 9 22 chr3 35450446 35450763 -182586395 - AluSp SINE Alu 0 313 1 566 253 96 111 chr3 35451008 35451590 -182585568 - MLT1G LTR MaLR -24 531 1 229 361 46 32 chr3 35452378 35452594 -182584564 - MLT1J LTR MaLR -54 457 239 262 330 52 17 chr3 35452850 35452965 -182584193 + MIR SINE MIR 29 147 -61 251 315 203 10 chr3 35453351 35453548 -182583610 + MLT1L LTR MaLR 369 603 -12 241 264 217 28 chr3 35453602 35453708 -182583450 - MER5A DNA MER1_type -7 182 57 191 300 20 0 chr3 35453773 35453823 -182583335 + MIR SINE MIR 83 133 -75 441 0 0 0 chr3 35454228 35454277 -182582881 + (TG)n Simple_repeat Simple_repeat 2 50 0 1370 105 0 0 chr3 35454307 35454478 -182582680 - AluSq SINE Alu -142 171 1 3131 99 46 0 chr3 35455422 35455855 -182581303 + MLT2A2 LTR ERVL 1 453 0 254 211 0 39 chr3 35456555 35456607 -182580551 + MIR3 SINE MIR 118 167 -41 * 552 239 101 38 chr3 35456603 35456762 -182580396 + MER5B DNA MER1_type 7 175 -3 399 236 150 50 chr3 35456934 35457074 -182580084 + MLT1E LTR MaLR 97 250 -343 807 220 37 50 chr3 35457079 35457320 -182579838 + MLT1A1 LTR MaLR 1 238 -127 206 303 158 0 chr3 35457326 35457402 -182579756 + MIR3 SINE MIR 114 201 -7 607 296 13 48 chr3 35457434 35457664 -182579494 + MIR SINE MIR 23 244 -18 976 176 0 0 chr3 35459515 35459697 -182577461 + L1MB1 LINE L1 5986 6167 -1 27 0 0 0 chr3 35459947 35459974 -182577184 + AT_rich Low_complexity Low_complexity 1 27 0 784 241 80 63 chr3 35459994 35460081 -182577077 + L1ME LINE L1 5354 5438 -683 2535 63 0 0 chr3 35460081 35460383 -182576775 - AluY SINE Alu -9 302 1 784 241 80 63 chr3 35460383 35460756 -182576402 + L1ME LINE L1 5438 5822 -299 340 250 50 6 chr3 35461421 35461581 -182575577 - MLT1H1 LTR MaLR 0 555 383 1859 248 35 30 chr3 35461718 35462283 -182574875 - MER74B LTR ERVL 0 622 55 865 216 124 66 chr3 35462617 35462965 -182574193 - LTR16A1 LTR ERVL 0 457 90 1813 199 17 6 chr3 35462966 35463327 -182573831 - MLT1A1 LTR MaLR 0 365 1 211 324 15 0 chr3 35464880 35464948 -182572210 + CT-rich Low_complexity Low_complexity 4 72 0 337 165 24 82 chr3 35465416 35465501 -182571657 + MER116 DNA Mariner 1 80 0 1001 275 70 31 chr3 35466691 35467135 -182570023 - LTR16C LTR ERVL -30 461 1 1792 175 189 16 chr3 35467631 35468060 -182569098 + MLT1D LTR MaLR 1 503 -2 888 213 12 0 chr3 35468269 35468429 -182568729 + MIR SINE MIR 4 165 -97 1557 188 151 10 chr3 35468432 35468836 -182568322 + MLT1C LTR MaLR 6 466 -1 236 273 81 30 chr3 35468837 35468936 -182568222 + MIR SINE MIR 159 262 0 1028 214 14 37 chr3 35469068 35469283 -182567875 - AluJo SINE Alu -102 210 1 294 324 0 0 chr3 35469429 35469500 -182567658 + Charlie1 DNA MER1_type 1 71 -2690 1494 175 55 18 chr3 35469500 35469901 -182567257 + Charlie1 DNA MER1_type 2344 2759 -2 428 214 34 0 chr3 35471621 35471710 -182565448 + L2 LINE L2 3220 3311 -2 450 65 0 0 chr3 35472392 35472454 -182564704 + (TC)n Simple_repeat Simple_repeat 2 63 0 3164 90 44 2 chr3 35472797 35473232 -182563926 + MLT2A2 LTR ERVL 1 453 0 23 0 0 0 chr3 35473932 35473955 -182563203 + AT_rich Low_complexity Low_complexity 1 23 0 575 266 72 87 chr3 35474031 35474490 -182562668 - LTR16A1 LTR ERVL -4 453 2 2315 184 14 16 chr3 35474696 35475195 -182561963 + L1MD3 LINE L1 7498 7995 0 188 146 49 0 chr3 35475386 35475427 -182561731 + GA-rich Low_complexity Low_complexity 3 45 0 379 302 77 12 chr3 35476176 35476345 -182560813 - MIR SINE MIR -1 261 82 631 294 58 22 chr3 35476588 35476948 -182560210 + L1ME4a LINE L1 5532 5904 -217 2406 104 62 3 chr3 35476957 35477313 -182559845 - MER51B LTR ERV1 0 377 1 9281 120 66 19 chr3 35477315 35477571 -182559587 - MER51B-int LTR ERV1 -1 7815 7572 2070 110 21 10 chr3 35477571 35477862 -182559296 - AluSg1 SINE Alu -15 294 1 9281 120 66 19 chr3 35477862 35479530 -182557628 - MER51B-int LTR ERV1 -244 7572 5620 347 161 108 21 chr3 35479520 35479613 -182557545 - MER51B-int LTR ERV1 -2188 5349 5249 * 2231 88 132 3 chr3 35479612 35479998 -182557160 - MER51B-int LTR ERV1 -2572 2645 2210 1771 161 55 5 chr3 35480007 35480465 -182556693 - MER51B-int LTR ERV1 -2774 3172 1474 * 8262 100 65 0 chr3 35480450 35481873 -182555285 - MER51B-int LTR ERV1 -4501 3315 1801 596 168 71 54 chr3 35481873 35482070 -182555088 - MER4A LTR ERV1 -130 534 276 243 188 0 0 chr3 35482075 35482123 -182555035 - MER4A LTR ERV1 -566 98 51 4574 116 17 19 chr3 35482139 35483440 -182553718 - MER51B-int LTR ERV1 -6321 1495 1 2447 103 56 3 chr3 35483440 35483798 -182553360 - MER51B LTR ERV1 0 377 1 321 219 106 41 chr3 35483956 35484079 -182553079 + L1ME4a LINE L1 5977 6107 -14 4122 98 8 90 chr3 35484798 35485520 -182551638 - MER4A LTR ERV1 0 664 2 467 183 11 0 chr3 35485728 35485821 -182551337 - LTR16A1 LTR ERVL -19 438 345 264 252 55 71 chr3 35486217 35486426 -182550732 + LTR36 LTR ERV1 400 556 0 444 301 9 69 chr3 35486550 35486766 -182550392 - LTR16A1 LTR ERVL -236 221 19 233 250 27 36 chr3 35486908 35487020 -182550138 - L1M4 LINE L1 -2667 3479 3369 1234 305 109 4 chr3 35487536 35488058 -182549100 + MLT2F LTR ERVL 19 595 -68 563 318 12 6 chr3 35488614 35488787 -182548371 + G-rich Low_complexity Low_complexity 2 175 0 2212 117 3 3 chr3 35488787 35489078 -182548080 - AluSq SINE Alu -22 291 1 438 261 46 15 chr3 35489465 35489595 -182547563 - MIR3 SINE MIR -7 201 68 240 169 99 14 chr3 35490479 35490550 -182546608 - MLT1H LTR MaLR -12 583 507 249 264 91 41 chr3 35490575 35490696 -182546462 - MLT1H LTR MaLR -185 364 238 2588 94 92 8 chr3 35490706 35491194 -182545964 + MER11A LTR ERVK 1 529 -737 631 269 118 41 chr3 35491310 35491441 -182545717 - MLT1H LTR MaLR -185 364 244 4751 170 24 56 chr3 35491441 35492547 -182544611 + MER11C LTR ERVK 1 1071 0 631 269 118 41 chr3 35492547 35492753 -182544405 - MLT1H LTR MaLR -305 244 1 12957 220 24 33 chr3 35492882 35498206 -182538952 - L1PA16 LINE L1 -21 6202 793 307 260 24 32 chr3 35498986 35499109 -182538049 - MLT1K LTR MaLR -160 428 307 1638 215 71 56 chr3 35499863 35500608 -182536550 + L1MC5 LINE L1 6768 7523 -438 422 273 32 39 chr3 35500772 35500926 -182536232 + L1ME3A LINE L1 5975 6127 -43 216 204 0 0 chr3 35501080 35501124 -182536034 + A-rich Low_complexity Low_complexity 1 44 0 320 359 26 13 chr3 35501709 35501943 -182535215 + MLT1H LTR MaLR 21 257 -292 510 324 33 22 chr3 35503117 35503299 -182533859 - MIR SINE MIR -17 245 62 231 281 31 0 chr3 35503468 35503532 -182533626 - L2 LINE L2 0 3272 3207 326 322 42 111 chr3 35504276 35504680 -182532478 - L2 LINE L2 0 3272 2897 292 197 61 0 chr3 35505463 35505529 -182531629 - MLT1L LTR MaLR 0 615 546 617 242 57 44 chr3 35505543 35505770 -182531388 + MLT1J2 LTR MaLR 7 236 -214 463 270 96 103 chr3 35506004 35506325 -182530833 - MLT1L LTR MaLR -166 449 130 1865 161 143 11 chr3 35506325 35506703 -182530455 - MSTA LTR MaLR 0 428 1 463 270 96 103 chr3 35506703 35506818 -182530340 - MLT1L LTR MaLR -485 130 16 580 310 25 15 chr3 35507647 35507890 -182529268 - MIR SINE MIR -17 245 4 787 226 89 5 chr3 35508799 35508989 -182528169 + MER58A DNA MER1_type 13 218 -6 22 35 0 0 chr3 35509085 35509114 -182528044 + AT_rich Low_complexity Low_complexity 1 29 0 2092 152 0 0 chr3 35509307 35509609 -182527549 + AluSx SINE Alu 1 302 -10 246 211 99 0 chr3 35510079 35510150 -182527008 - MIR SINE MIR -58 204 127 293 236 24 126 chr3 35510182 35510250 -182526908 - MER81 DNA DNA 0 114 63 2420 80 0 0 chr3 35510250 35510602 -182526556 + AluY SINE Alu 1 311 0 293 236 24 126 chr3 35510602 35510660 -182526498 - MER81 DNA DNA -51 63 1 560 211 15 38 chr3 35511410 35511543 -182525615 + L2 LINE L2 2231 2360 -954 662 210 7 0 chr3 35511564 35511707 -182525451 - MER77 LTR ERV1 0 605 462 1826 279 82 10 chr3 35511724 35512598 -182524560 + L2 LINE L2 2366 3313 0 1010 195 11 0 chr3 35512595 35512769 -182524389 + MER5A DNA MER1_type 14 189 0 * 237 347 32 32 chr3 35514283 35514407 -182522751 + MIR SINE MIR 1 124 -84 334 258 258 15 chr3 35514443 35514575 -182522583 - MER5B DNA MER1_type -14 164 1 817 163 0 0 chr3 35516289 35516424 -182520734 + AluSp/q SINE Alu 172 306 -7 2114 136 0 3 chr3 35516563 35516865 -182520293 - AluSx SINE Alu -10 302 2 303 319 85 14 chr3 35517425 35517566 -182519592 - MIR SINE MIR -93 169 19 1714 188 39 15 chr3 35519797 35520132 -182517026 - MER61A LTR ERV1 0 343 1 331 230 27 0 chr3 35520303 35520377 -182516781 + MIR3 SINE MIR 93 168 -40 231 333 39 10 chr3 35520841 35520943 -182516215 + MER102a DNA MER1_type 1 105 -225 250 265 41 0 chr3 35521013 35521111 -182516047 + MER102a DNA MER1_type 229 330 0 254 244 22 56 chr3 35522734 35522824 -182514334 - MIR SINE MIR -12 250 164 319 246 104 45 chr3 35523301 35523435 -182513723 - MIR SINE MIR -11 251 110 311 276 86 9 chr3 35523642 35523747 -182513411 - L2 LINE L2 -8 3305 3193 807 168 43 48 chr3 35524273 35524482 -182512676 + MER33 DNA MER1_type 25 232 -92 343 262 75 9 chr3 35525274 35525381 -182511777 + MIR SINE MIR 84 197 -65 747 172 86 0 chr3 35525555 35525741 -182511417 - L1MD3 LINE L1 -22 7973 7772 * 1024 224 59 30 chr3 35525738 35526144 -182511014 - L1MC4a LINE L1 -577 7231 6814 295 305 141 14 chr3 35526393 35526651 -182510507 - L1MCb LINE L1 -5756 666 264 235 315 124 0 chr3 35527124 35527213 -182509945 - L2 LINE L2 -22 3250 3151 646 294 158 41 chr3 35527338 35527757 -182509401 - LTR16C LTR ERVL -23 468 1 210 302 115 0 chr3 35527761 35527857 -182509301 - L2 LINE L2 -242 3030 2924 3786 282 119 22 chr3 35528079 35529620 -182507538 - L2 LINE L2 -716 2598 909 209 291 104 8 chr3 35530610 35530744 -182506414 - MIR SINE MIR -110 152 6 636 228 114 7 chr3 35531449 35531598 -182505560 - MER5A DNA MER1_type -6 183 19 1221 218 127 6 chr3 35531972 35532311 -182504847 - L1ME1 LINE L1 -5 6161 5782 22 70 0 0 chr3 35532516 35532559 -182504599 + AT_rich Low_complexity Low_complexity 1 43 0 31 26 0 0 chr3 35532582 35532620 -182504538 + AT_rich Low_complexity Low_complexity 1 38 0 6531 7 1 0 chr3 35533359 35534124 -182503034 + L1HS LINE L1 5390 6155 0 195 114 0 0 chr3 35534125 35534160 -182502998 + (A)n Simple_repeat Simple_repeat 1 35 0 2417 199 14 3 chr3 35534271 35534924 -182502234 + L1HS LINE L1 5496 6155 0 366 74 0 0 chr3 35534931 35534985 -182502173 + (A)n Simple_repeat Simple_repeat 1 54 0 264 274 12 0 chr3 35535176 35535260 -182501898 + L1ME LINE L1 5726 5810 -354 1028 207 22 14 chr3 35535283 35535505 -182501653 - MER58A DNA MER1_type 0 224 1 538 252 161 0 chr3 35537613 35537768 -182499390 + MER5A DNA MER1_type 9 188 -1 320 200 139 73 chr3 35539347 35539512 -182497646 + MLT1K LTR MaLR 394 569 -19 243 232 0 18 chr3 35539842 35539898 -182497260 - MIR SINE MIR -133 129 75 2406 77 17 0 chr3 35540181 35540480 -182496678 + AluSq SINE Alu 3 306 -7 273 251 146 96 chr3 35540695 35540914 -182496244 + MIR SINE MIR 20 249 -13 488 89 13 0 chr3 35541696 35541775 -182495383 + (TG)n Simple_repeat Simple_repeat 2 81 0 230 326 82 5 chr3 35542836 35543020 -182494138 - LTR16C LTR ERVL -67 424 227 2339 104 0 0 chr3 35543131 35543438 -182493720 + AluSx SINE Alu 1 307 -5 360 338 19 25 chr3 35543582 35543742 -182493416 - MIR SINE MIR -86 176 18 1661 250 128 13 chr3 35544946 35545478 -182491680 + MLT1E LTR MaLR 1 593 0 650 303 86 52 chr3 35545574 35545898 -182491260 + MLT1H LTR MaLR 215 549 0 2375 106 0 0 chr3 35550195 35550498 -182486660 + AluSx SINE Alu 1 303 -9 22 0 0 0 chr3 35551821 35551843 -182485315 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr3 35552810 35552838 -182484320 + AT_rich Low_complexity Low_complexity 1 28 0 348 230 42 48 chr3 35553699 35553864 -182483294 + MER103 DNA DNA 3 166 0 2235 110 10 16 chr3 35554250 35554560 -182482598 + AluSx SINE Alu 1 308 -4 871 320 15 7 chr3 35556105 35556377 -182480781 + LTR16C LTR ERVL 88 361 -130 22 35 0 0 chr3 35556908 35556937 -182480221 + AT_rich Low_complexity Low_complexity 1 29 0 222 118 0 0 chr3 35557741 35557775 -182479383 + (TTA)n Simple_repeat Simple_repeat 3 36 0 630 197 8 16 chr3 35557776 35557898 -182479260 - FLAM_C SINE Alu -22 121 1 30 0 0 0 chr3 35557900 35557930 -182479228 + AT_rich Low_complexity Low_complexity 1 30 0 4290 111 18 0 chr3 35558043 35558785 -182478373 - L1P4 LINE L1 -735 5433 4680 798 226 119 18 chr3 35559589 35559815 -182477343 - MIR SINE MIR -12 250 2 2226 107 3 22 chr3 35560806 35561124 -182476034 - AluSx SINE Alu 0 312 1 21 57 0 0 chr3 35561367 35561402 -182475756 + AT_rich Low_complexity Low_complexity 1 35 0 1486 243 57 33 chr3 35561534 35561862 -182475296 + L1ME3 LINE L1 5602 5950 -212 2315 118 11 32 chr3 35561862 35562234 -182474924 + THE1B LTR MaLR 1 364 0 1486 243 57 33 chr3 35562234 35562445 -182474713 + L1ME3 LINE L1 5950 6154 -8 21 57 0 0 chr3 35562445 35562480 -182474678 + AT_rich Low_complexity Low_complexity 1 35 0 1501 106 53 39 chr3 35562615 35562899 -182474259 + THE1C LTR MaLR 88 375 0 194 405 67 0 chr3 35563805 35563894 -182473264 - L2 LINE L2 -231 3041 2947 450 275 121 62 chr3 35564201 35564645 -182472513 - L2 LINE L2 -191 3081 2612 515 295 161 5 chr3 35564895 35565112 -182472046 - MIR SINE MIR 0 262 12 250 310 0 0 chr3 35566839 35566910 -182470248 + MER5A DNA MER1_type 12 82 -107 444 225 163 31 chr3 35567038 35567198 -182469960 + MER5A DNA MER1_type 9 189 0 270 229 12 36 chr3 35567210 35567293 -182469865 - MER5B DNA MER1_type 0 178 98 338 256 30 11 chr3 35567295 35567433 -182469725 - MER91A DNA MER1_type -4 192 1 207 0 0 0 chr3 35567499 35567522 -182469636 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 675 203 51 83 chr3 35567533 35567823 -182469335 - L1MC5 LINE L1 -34 7927 7648 1978 154 11 45 chr3 35567823 35568180 -182468978 - MER7A DNA MER2_type -2 344 2 675 203 51 83 chr3 35568180 35568239 -182468919 - L1MC5 LINE L1 -313 7648 7589 2112 219 56 76 chr3 35568380 35568542 -182468616 - L1MC5 LINE L1 -465 7496 7332 948 243 23 0 chr3 35568542 35568760 -182468398 - MER58A DNA MER1_type 0 224 2 2112 219 56 76 chr3 35568760 35569527 -182467631 - L1MC5 LINE L1 -629 7332 6558 336 326 96 41 chr3 35570171 35570389 -182466769 - L2 LINE L2 -5 3267 3038 251 313 70 43 chr3 35571918 35572033 -182465125 - MIR3 SINE MIR -6 202 85 367 248 166 73 chr3 35573471 35573773 -182463385 + MLT1I LTR MaLR 70 399 -10 2226 108 3 0 chr3 35573991 35574286 -182462872 + AluSp SINE Alu 1 296 -17 273 309 122 16 chr3 35575404 35575527 -182461631 - MIR SINE MIR -32 230 95 735 144 8 23 chr3 35575636 35575768 -182461390 + FLAM_C SINE Alu 2 131 -2 278 267 22 33 chr3 35575800 35575890 -182461268 - MIR SINE MIR -96 166 78 2509 71 0 0 chr3 35576602 35576910 -182460248 - AluY SINE Alu -3 308 1 736 241 148 67 chr3 35578420 35579142 -182458016 + LTR41 LTR ERVL 1 795 0 2487 309 69 48 chr3 35579777 35581206 -182455952 + ERVL LTR ERVL 765 2223 -3541 445 267 0 9 chr3 35581210 35581315 -182455843 + L2 LINE L2 3210 3313 0 203 143 0 24 chr3 35582915 35582957 -182454201 + (TTTCC)n Simple_repeat Simple_repeat 4 44 0 26 30 0 0 chr3 35584133 35584166 -182452992 + AT_rich Low_complexity Low_complexity 1 33 0 258 202 140 61 chr3 35584353 35584467 -182452691 - MER112 DNA MER1_type -6 254 132 225 246 0 0 chr3 35584570 35584635 -182452523 + CT-rich Low_complexity Low_complexity 2 66 0 581 311 30 33 chr3 35584635 35584969 -182452189 - L1MC4a LINE L1 -1870 5938 5606 256 276 102 10 chr3 35584991 35585089 -182452069 - L1MC4a LINE L1 -2247 5561 5455 1766 136 0 0 chr3 35585236 35585486 -182451672 - AluJb SINE Alu -28 284 35 231 67 0 0 chr3 35586233 35586263 -182450895 - MIR SINE MIR -114 148 119 988 208 0 5 chr3 35586263 35586470 -182450688 + MLT1A1 LTR MaLR 1 206 -159 192 389 11 11 chr3 35587385 35587475 -182449683 - L2 LINE L2 -369 2903 2814 235 256 66 5 chr3 35587574 35587645 -182449513 + MIR SINE MIR 80 143 -65 506 260 34 38 chr3 35588232 35588467 -182448691 + LTR37B LTR ERV1 176 409 -59 58 15 0 0 chr3 35589570 35589635 -182447523 + AT_rich Low_complexity Low_complexity 1 65 0 9461 148 24 10 chr3 35589806 35591368 -182445790 + Tigger1 DNA MER2_type 1 1584 -834 347 279 9 0 chr3 35591370 35591481 -182445677 + L1PB1 LINE L1 79 190 -6673 * 13944 198 35 22 chr3 35591461 35593538 -182443620 + L1PB1 LINE L1 872 2921 -3946 2518 66 3 0 chr3 35593538 35593839 -182443319 + AluY SINE Alu 1 302 -9 13944 198 35 22 chr3 35593839 35595720 -182441438 + L1PB1 LINE L1 2921 4776 -2091 2263 92 0 0 chr3 35595720 35596062 -182441096 + AluSc SINE Alu 1 342 0 13944 198 35 22 chr3 35596062 35597490 -182439668 + L1PB1 LINE L1 4776 6512 -355 450 0 0 0 chr3 35597490 35597540 -182439618 + (TA)n Simple_repeat Simple_repeat 2 51 0 13944 198 35 22 chr3 35597540 35597846 -182439312 + L1PB1 LINE L1 6512 6813 -54 25 0 0 0 chr3 35597869 35597894 -182439264 + AT_rich Low_complexity Low_complexity 1 25 0 4969 141 19 2 chr3 35597901 35598703 -182438455 + Tigger1 DNA MER2_type 1603 2417 -1 1084 241 74 27 chr3 35599673 35600076 -182437082 - MER113 DNA MER1_type? -96 425 4 23 0 0 0 chr3 35600669 35600692 -182436466 + AT_rich Low_complexity Low_complexity 1 23 0 2114 125 0 0 chr3 35601184 35601480 -182435678 + AluSx SINE Alu 1 296 -16 1783 112 0 0 chr3 35602334 35602590 -182434568 + AluSx SINE Alu 52 307 0 2373 74 3 3 chr3 35603914 35604212 -182432946 - AluY SINE Alu -13 298 1 188 170 21 21 chr3 35604742 35604789 -182432369 + MER5C DNA MER1_type 273 319 -5 603 209 162 11 chr3 35604947 35605225 -182431933 - MER33 DNA MER1_type -1 323 4 417 297 54 0 chr3 35605635 35605746 -182431412 - L2 LINE L2 0 3313 3197 264 30 0 0 chr3 35606936 35606969 -182430189 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2107 116 3 0 chr3 35607238 35607531 -182429627 + AluSq SINE Alu 1 294 -19 863 95 16 166 chr3 35608446 35608546 -182428612 - L1M2 LINE L1 -642 5658 5606 2057 123 10 3 chr3 35608546 35608847 -182428311 - AluSc SINE Alu -6 303 1 863 95 16 166 chr3 35608847 35608965 -182428193 - L1M2 LINE L1 -694 5606 5472 327 238 129 20 chr3 35609241 35609342 -182427816 + MIR SINE MIR 7 119 -89 9047 54 3 1 chr3 35609555 35610712 -182426446 - L1P LINE L1 -1097 5049 3891 27 29 0 0 chr3 35611032 35611066 -182426092 + AT_rich Low_complexity Low_complexity 1 34 0 195 42 0 0 chr3 35611856 35611880 -182425278 + (T)n Simple_repeat Simple_repeat 1 24 0 1426 260 2 4 chr3 35611893 35612354 -182424804 - L1PA2 LINE L1 0 6155 5696 413 181 86 29 chr3 35613259 35613364 -182423794 - L2 LINE L2 -33 3280 3170 204 40 0 0 chr3 35613366 35613391 -182423767 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2525 72 20 80 chr3 35614426 35614826 -182422332 + MER51B LTR ERV1 2 377 0 806 156 0 7 chr3 35615070 35615205 -182421953 + MER4D LTR ERV1 1 134 -769 589 258 0 0 chr3 35615600 35615720 -182421438 - FLAM_A SINE Alu -13 120 1 2232 136 0 0 chr3 35616452 35616761 -182420397 + AluSx SINE Alu 1 309 -3 2025 144 3 3 chr3 35616766 35617058 -182420100 + AluSx SINE Alu 1 292 -20 329 115 0 33 chr3 35617061 35617122 -182420036 + (GGGAA)n Simple_repeat Simple_repeat 4 62 0 1205 275 126 29 chr3 35617417 35617772 -182419386 + L2 LINE L2 2588 2907 -406 2143 144 40 80 chr3 35617772 35618224 -182418934 - Tigger2a DNA MER2_type 0 434 1 1205 275 126 29 chr3 35618224 35618505 -182418653 + L2 LINE L2 2907 3312 -1 934 189 46 166 chr3 35618584 35618728 -182418430 + L1M4 LINE L1 4615 4775 -1371 1204 104 38 104 chr3 35618728 35619016 -182418142 + L1MA8 LINE L1 6017 6285 -6 934 189 46 166 chr3 35619016 35619120 -182418038 + L1M4 LINE L1 4775 4890 -1256 4049 154 32 3 chr3 35619120 35619873 -182417285 + L1MA4 LINE L1 5514 6288 -12 934 189 46 166 chr3 35619873 35620334 -182416824 + L1M4 LINE L1 4890 5240 -906 1958 126 25 0 chr3 35622328 35622605 -182414553 + AluSx SINE Alu 1 284 -28 205 196 39 0 chr3 35622791 35622842 -182414316 + CT-rich Low_complexity Low_complexity 3 55 0 6094 127 27 18 chr3 35623036 35623162 -182413996 - L1 LINE L1 -3490 4075 3952 1826 159 47 16 chr3 35623162 35623526 -182413632 + THE1C LTR MaLR 1 375 0 6094 127 27 18 chr3 35623526 35624383 -182412775 - L1 LINE L1 -3613 3952 3074 2416 78 0 0 chr3 35624383 35624677 -182412481 - AluY SINE Alu -17 294 1 6094 127 27 18 chr3 35624677 35625127 -182412031 - L1 LINE L1 -4491 3074 2630 959 235 59 29 chr3 35625196 35625434 -182411724 - MIR SINE MIR 0 262 18 2725 125 0 2 chr3 35625492 35625901 -182411257 + MSTA LTR MaLR 21 428 0 23 68 0 0 chr3 35626191 35626235 -182410923 + AT_rich Low_complexity Low_complexity 1 44 0 766 270 126 18 chr3 35626248 35626574 -182410584 - L2 LINE L2 -1 3312 2952 322 278 87 9 chr3 35626884 35626999 -182410159 - L2 LINE L2 -261 3011 2888 1688 139 27 4 chr3 35627134 35627392 -182409766 + AluSx SINE Alu 19 282 -30 777 271 50 25 chr3 35627936 35628213 -182408945 + MLT1J LTR MaLR 107 390 -121 363 214 43 3 chr3 35628231 35628332 -182408826 - MIR SINE MIR -89 119 7 1632 109 9 102 chr3 35628622 35628724 -182408434 + L1MA4 LINE L1 5488 5598 -702 2350 86 10 3 chr3 35628724 35629027 -182408131 + AluSc SINE Alu 1 305 -4 1632 109 9 102 chr3 35629027 35629246 -182407912 + L1MA4 LINE L1 5598 5779 -521 834 128 5 64 chr3 35629250 35629437 -182407721 + L1MA4 LINE L1 6119 6294 -6 29 60 0 0 chr3 35629437 35629487 -182407671 + AT_rich Low_complexity Low_complexity 1 50 0 472 230 43 22 chr3 35629532 35629671 -182407487 - MER58B DNA MER1_type -10 331 190 21 82 0 0 chr3 35630635 35630684 -182406474 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr3 35632193 35632214 -182404944 + AT_rich Low_complexity Low_complexity 1 21 0 2280 85 0 10 chr3 35633929 35634224 -182402934 + AluY SINE Alu 1 292 -19 265 250 0 18 chr3 35634425 35634481 -182402677 + L2 LINE L2 3204 3258 -14 253 193 0 35 chr3 35634432 35634489 -182402669 + MIR SINE MIR 206 260 -2 * 2432 245 61 21 chr3 35635384 35636256 -182400902 + L1ME2 LINE L1 5258 6164 0 550 281 4 71 chr3 35637096 35637363 -182399795 + MLT2C1 LTR ERVL 128 376 -21 223 340 219 21 chr3 35637609 35637888 -182399270 - L2 LINE L2 -767 2547 2214 556 248 25 8 chr3 35638320 35638441 -182398717 + L2 LINE L2 3189 3311 -2 726 84 0 0 chr3 35639374 35639469 -182397689 + AluY SINE Alu 209 303 -8 345 335 35 12 chr3 35639633 35639804 -182397354 + MIR SINE MIR 23 196 -66 224 179 75 30 chr3 35641811 35641878 -182395280 - MIR SINE MIR -65 197 128 616 196 20 13 chr3 35641986 35642139 -182395019 + L1MC5 LINE L1 7717 7870 -91 330 250 130 0 chr3 35643851 35643959 -182393199 + MIR SINE MIR 128 249 -13 470 327 146 11 chr3 35644000 35644349 -182392809 + L2 LINE L2 2489 2884 -430 225 0 0 0 chr3 35644437 35644462 -182392696 + (T)n Simple_repeat Simple_repeat 1 25 0 309 312 104 8 chr3 35644663 35644788 -182392370 + L2 LINE L2 3136 3272 0 2230 58 41 7 chr3 35644958 35645250 -182391908 - AluY SINE Alu -9 302 1 253 385 120 5 chr3 35646455 35646647 -182390511 + L2 LINE L2 2899 3112 -160 336 317 10 0 chr3 35646716 35646817 -182390341 - MIR SINE MIR 0 262 161 1651 223 61 23 chr3 35646837 35647277 -182389881 + LTR2B LTR ERV1 34 490 0 255 319 217 29 chr3 35647277 35647415 -182389743 - MIR SINE MIR -98 164 1 553 328 20 44 chr3 35647825 35647995 -182389163 - MIR SINE MIR -1 261 97 2238 117 0 22 chr3 35647995 35648311 -182388847 - AluSq SINE Alu -4 309 1 553 328 20 44 chr3 35648311 35648390 -182388768 - MIR SINE MIR -165 97 18 1416 173 81 16 chr3 35648413 35648633 -182388525 - L1P LINE L1 -1803 4343 4096 894 45 0 0 chr3 35648633 35648744 -182388414 - L1PA4 LINE L1 0 6155 6045 1416 173 81 16 chr3 35648744 35648830 -182388328 - L1P LINE L1 -2050 4096 4017 6093 99 11 3 chr3 35648830 35649626 -182387532 + L1PA13 LINE L1 4351 5139 -1024 2255 99 3 10 chr3 35649626 35649939 -182387219 + AluY SINE Alu 1 311 0 6093 99 11 3 chr3 35649939 35650960 -182386198 + L1PA13 LINE L1 5139 6159 -4 846 261 133 38 chr3 35651357 35651809 -182385349 - L2 LINE L2 0 3313 2819 1913 123 29 0 chr3 35652713 35653016 -182384142 + AluSx SINE Alu 1 311 0 24 32 0 0 chr3 35653032 35653063 -182384095 + AT_rich Low_complexity Low_complexity 1 31 0 6809 30 0 1 chr3 35654022 35654884 -182382274 + L1P LINE L1 4442 5302 -844 862 163 0 7 chr3 35654898 35655051 -182382107 - MLT1A1 LTR MaLR -213 152 1 197 218 10 183 chr3 35655155 35655352 -182381806 - L2 LINE L2 -97 3216 3054 254 214 12 0 chr3 35656870 35656954 -182380204 + (TG)n Simple_repeat Simple_repeat 2 86 0 329 280 80 84 chr3 35657414 35657653 -182379505 - L2 LINE L2 -785 2529 2292 418 214 67 22 chr3 35657953 35658131 -182379027 + MER53 DNA DNA 4 189 0 1619 160 82 130 chr3 35658636 35658965 -182378193 + LTR49 LTR ERV1 1 287 -308 2048 166 68 36 chr3 35658965 35659380 -182377778 - MSTC LTR MaLR 0 428 1 1619 160 82 130 chr3 35659380 35659675 -182377483 + LTR49 LTR ERV1 287 595 0 2095 93 25 3 chr3 35659870 35660193 -182376965 + MER51B LTR ERV1 48 377 0 4656 158 50 8 chr3 35660436 35661303 -182375855 + MER4D LTR ERV1 1 903 0 2284 132 91 5 chr3 35662572 35662966 -182374192 - MSTA LTR MaLR 0 428 1 248 197 15 45 chr3 35663403 35663469 -182373689 + MLT1J2 LTR MaLR 99 162 -288 614 293 148 27 chr3 35663488 35663785 -182373373 + MLT1G1 LTR MaLR 230 562 -33 887 110 123 7 chr3 35664022 35664176 -182372982 + MER4E LTR ERV1 1 172 -594 2059 133 141 3 chr3 35664177 35664553 -182372605 - MSTA LTR MaLR 0 428 1 621 213 25 6 chr3 35664553 35664713 -182372445 + L1ME4a LINE L1 3622 3784 -2362 1994 153 26 0 chr3 35664713 35665059 -182372099 - MER44D DNA MER2_type 0 605 196 783 246 33 33 chr3 35665239 35665544 -182371614 + L1ME4a LINE L1 3786 4090 -2056 2766 197 27 24 chr3 35665579 35666249 -182370909 + MER67C LTR ERV1 39 710 0 1793 223 19 10 chr3 35666256 35666740 -182370418 + L1ME4a LINE L1 4069 4556 -1590 1409 206 129 45 chr3 35666740 35667206 -182369952 - MLT1D LTR MaLR 0 505 1 1139 187 51 12 chr3 35667211 35668181 -182368977 + L1ME4a LINE L1 4566 5619 -565 1057 231 56 36 chr3 35668181 35668484 -182368674 + MER76 LTR ERV 1 309 -379 2076 113 7 0 chr3 35668690 35668997 -182368161 + AluSx SINE Alu 1 309 0 253 252 50 22 chr3 35669096 35669235 -182367923 + L1ME4a LINE L1 5977 6119 -2 278 294 185 60 chr3 35670081 35670449 -182366709 + L2 LINE L2 1990 2403 -911 1006 184 77 4 chr3 35670463 35670696 -182366462 + MLT1C LTR MaLR 3 252 -215 297 270 132 26 chr3 35671294 35671446 -182365712 + MIR SINE MIR 95 262 0 3531 74 0 0 chr3 35671495 35671939 -182365219 - MLT2A1 LTR ERVL 0 444 1 226 327 20 0 chr3 35672066 35672167 -182364991 - LTR67 LTR ERVL -50 507 405 493 328 12 41 chr3 35672271 35672515 -182364643 - LTR67 LTR ERVL -319 238 2 2251 75 0 46 chr3 35672567 35672873 -182364285 - AluY SINE Alu -19 292 1 225 159 0 0 chr3 35672883 35672927 -182364231 + GA-rich Low_complexity Low_complexity 2 45 0 264 59 0 0 chr3 35673571 35673605 -182363553 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 228 205 0 0 chr3 35673606 35673645 -182363513 - L2 LINE L2 -12 3260 3222 718 303 122 3 chr3 35673657 35673961 -182363197 - L2 LINE L2 -1608 1706 1367 10465 166 73 22 chr3 35675170 35680212 -182356946 + L1PA12 LINE L1 230 6063 -162 10465 150 32 42 chr3 35680212 35682829 -182354329 + L1PA12 LINE L1 3611 6224 -1 10465 166 73 22 chr3 35682829 35683000 -182354158 + L1PA12 LINE L1 6063 6224 -1 4311 72 40 9 chr3 35683000 35684089 -182353069 - MER11A LTR ERVK 0 1266 5 1512 115 4 47 chr3 35684089 35684342 -182352816 + L1PB2 LINE L1 5903 6144 -7 420 20 0 0 chr3 35685392 35685441 -182351717 + (TG)n Simple_repeat Simple_repeat 1 49 0 1501 131 49 30 chr3 35685441 35685761 -182351397 - MER51A LTR ERV1 -83 551 149 286 346 62 0 chr3 35686335 35686465 -182350693 + L3b LINE CR1 1183 1320 -263 2269 114 0 7 chr3 35687300 35687599 -182349559 - AluSx SINE Alu -15 297 1 1400 268 89 4 chr3 35687945 35688396 -182348762 + LTR16C LTR ERVL 1 489 -2 246 32 0 0 chr3 35688992 35689023 -182348135 + (TCCA)n Simple_repeat Simple_repeat 1 31 0 680 202 42 60 chr3 35689032 35689200 -182347958 - MIR SINE MIR -75 187 23 218 182 0 65 chr3 35689864 35689941 -182347217 + (TAAA)n Simple_repeat Simple_repeat 2 73 0 345 24 0 0 chr3 35690476 35690518 -182346640 + (TG)n Simple_repeat Simple_repeat 2 43 0 416 240 107 7 chr3 35691034 35691184 -182345974 + LTR41 LTR ERVL 1 165 -608 263 302 19 0 chr3 35691676 35691782 -182345376 + LTR41 LTR ERVL 660 767 -6 448 230 85 71 chr3 35691957 35692240 -182344918 + MLT1H LTR MaLR 75 361 -188 273 184 0 16 chr3 35692297 35692368 -182344790 + MLT1G1 LTR MaLR 480 595 0 937 122 19 6 chr3 35693015 35693171 -182343987 - L1PA15 LINE L1 -21 6144 5987 1905 120 60 19 chr3 35693196 35693563 -182343595 - L1MA2 LINE L1 0 6304 5923 3584 160 14 32 chr3 35693590 35694309 -182342849 - L1 LINE L1 -1700 4446 3741 1351 166 18 5 chr3 35694309 35694560 -182342598 - AluJb SINE Alu 0 313 60 206 31 0 31 chr3 35694572 35694604 -182342554 + (TTTTC)n Simple_repeat Simple_repeat 5 35 0 790 180 0 34 chr3 35694604 35694782 -182342376 - L1 LINE L1 -2451 3695 3524 27 0 0 0 chr3 35695115 35695142 -182342016 + AT_rich Low_complexity Low_complexity 1 27 0 1111 121 131 15 chr3 35696208 35696414 -182340744 - MER30 DNA MER1_type 0 230 1 657 203 14 0 chr3 35696456 35696599 -182340559 + LTR16C LTR ERVL 345 489 -2 315 0 0 0 chr3 35697027 35697062 -182340096 + (CA)n Simple_repeat Simple_repeat 2 36 0 269 256 188 30 chr3 35697909 35698042 -182339116 - L2 LINE L2 0 3313 3160 2429 100 0 0 chr3 35699012 35699322 -182337836 - AluSg SINE Alu 0 310 1 227 354 26 0 chr3 35699652 35699764 -182337394 - MIR SINE MIR 0 262 148 479 260 6 89 chr3 35699764 35699890 -182337268 + MIR SINE MIR 3 113 -149 2392 73 0 25 chr3 35699890 35700204 -182336954 - AluY SINE Alu -5 306 1 479 260 6 89 chr3 35700204 35700246 -182336912 + MIR SINE MIR 113 157 -105 24 0 0 0 chr3 35700284 35700308 -182336850 + AT_rich Low_complexity Low_complexity 1 24 0 25208 39 0 1 chr3 35700335 35704221 -182332937 - L1PA4 LINE L1 -7 6148 2263 13750 64 16 0 chr3 35704221 35706062 -182331096 - L1PA4 LINE L1 -4276 1870 1 366 270 20 74 chr3 35706106 35706254 -182330904 - MIR SINE MIR -95 167 28 1152 241 26 0 chr3 35706271 35706615 -182330543 + L1M4 LINE L1 3502 3854 -2292 379 171 0 0 chr3 35706629 35706699 -182330459 + L1PA16 LINE L1 6079 6148 -18 1855 145 0 7 chr3 35706719 35707002 -182330156 + AluSq SINE Alu 1 281 -32 423 0 0 0 chr3 35707002 35707049 -182330109 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 850 235 67 24 chr3 35707054 35707352 -182329806 + L1M4 LINE L1 3836 4146 -2000 * 1160 225 50 59 chr3 35707348 35707689 -182329469 - L1ME LINE L1 -470 5696 5354 600 164 29 0 chr3 35707689 35707793 -182329365 - U6 snRNA snRNA 0 107 1 1160 225 50 59 chr3 35707793 35707912 -182329246 - L1ME LINE L1 -812 5354 5235 2513 56 7 3 chr3 35707912 35708214 -182328944 - AluY SINE Alu -8 303 1 1160 225 50 59 chr3 35708214 35708542 -182328616 - L1ME LINE L1 -931 5235 4901 480 273 68 0 chr3 35708551 35708712 -182328446 + L2 LINE L2 2258 2429 -885 709 197 64 32 chr3 35708736 35708954 -182328204 + LTR41 LTR ERVL 1 225 -548 289 246 29 0 chr3 35709314 35709383 -182327775 + LTR41 LTR ERVL 514 584 -189 432 129 24 35 chr3 35709453 35709538 -182327620 + Tigger1 DNA MER2_type 4 87 -2331 10351 129 21 10 chr3 35709652 35711369 -182325789 + Tigger1 DNA MER2_type 682 2418 0 392 188 13 84 chr3 35711369 35711519 -182325639 + LTR41 LTR ERVL 635 773 0 227 132 66 118 chr3 35711536 35711612 -182325546 + L2 LINE L2 2500 2571 -743 1800 236 17 61 chr3 35711614 35712206 -182324952 + MLT1F1 LTR MaLR 2 567 0 391 261 37 118 chr3 35712206 35712478 -182324680 + L2 LINE L2 2568 2817 -497 212 253 91 91 chr3 35712482 35712747 -182324411 + L2 LINE L2 3036 3300 -13 695 62 10 0 chr3 35712748 35712845 -182324313 + (TCTA)n Simple_repeat Simple_repeat 1 98 0 263 399 54 0 chr3 35714297 35714445 -182322713 - L2 LINE L2 0 3272 3117 311 291 73 55 chr3 35714632 35714797 -182322361 - L2 LINE L2 -222 3050 2883 244 282 94 17 chr3 35715002 35715119 -182322039 + MIR SINE MIR 15 140 -122 231 218 0 0 chr3 35716257 35716312 -182320846 + (CA)n Simple_repeat Simple_repeat 1 55 0 222 214 0 0 chr3 35717755 35717797 -182319361 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 308 304 197 6 chr3 35717935 35718248 -182318910 - L2 LINE L2 -176 3096 2709 192 337 0 76 chr3 35718316 35718488 -182318670 + L2 LINE L2 2470 2628 -686 617 291 114 0 chr3 35718775 35719012 -182318146 + MLT1L LTR MaLR 352 615 0 252 303 43 25 chr3 35719138 35719300 -182317858 + L2 LINE L2 2829 2993 -279 491 193 0 46 chr3 35719418 35719527 -182317631 + MLT1I LTR MaLR 106 209 -200 605 217 101 48 chr3 35719615 35719804 -182317354 - MER58C DNA MER1_type -8 207 9 215 269 179 0 chr3 35720018 35720096 -182317062 + L2 LINE L2 3140 3231 -41 1204 54 7 0 chr3 35721520 35721667 -182315491 + AluSc SINE Alu 1 148 -161 198 0 0 0 chr3 35721730 35721752 -182315406 + (A)n Simple_repeat Simple_repeat 1 22 0 1082 102 7 0 chr3 35722460 35722607 -182314551 + AluSc SINE Alu 1 148 -161 216 0 0 0 chr3 35722668 35722692 -182314466 + (A)n Simple_repeat Simple_repeat 1 24 0 332 287 35 81 chr3 35722725 35722899 -182314259 + HAL1 LINE L1 103 268 -2239 419 301 111 18 chr3 35723078 35723410 -182313748 + HAL1 LINE L1 550 912 -1595 365 164 14 0 chr3 35723449 35723522 -182313636 + (TG)n Simple_repeat Simple_repeat 1 74 0 1436 272 134 34 chr3 35723602 35724754 -182312404 + HAL1 LINE L1 1013 2279 -228 408 176 39 17 chr3 35725092 35725332 -182311826 + (TA)n Simple_repeat Simple_repeat 1 245 0 25 0 0 0 chr3 35725401 35725426 -182311732 + AT_rich Low_complexity Low_complexity 1 25 0 380 194 10 19 chr3 35726009 35726112 -182311046 + Charlie7 DNA MER1_type 2511 2612 0 1065 172 0 20 chr3 35726613 35726676 -182310482 - MER3 DNA MER1_type -3 206 143 2018 132 3 3 chr3 35726676 35726971 -182310187 + AluSx SINE Alu 1 295 -17 1065 172 0 20 chr3 35726971 35727111 -182310047 - MER3 DNA MER1_type -66 143 7 195 125 0 0 chr3 35728092 35728132 -182309026 + (A)n Simple_repeat Simple_repeat 1 40 0 432 299 0 0 chr3 35728391 35728528 -182308630 - L1MC4a LINE L1 -1965 5843 5707 2413 81 0 3 chr3 35728649 35728958 -182308200 - AluY SINE Alu -3 308 1 1985 122 3 26 chr3 35728958 35729262 -182307896 - AluSx SINE Alu -15 297 1 189 0 0 0 chr3 35729709 35729730 -182307428 + (A)n Simple_repeat Simple_repeat 1 21 0 242 114 0 0 chr3 35732015 35732050 -182305108 + U2 snRNA snRNA 2 36 -152 1543 97 0 0 chr3 35732168 35732363 -182304795 - AluSx SINE Alu -117 195 1 556 118 88 0 chr3 35732705 35732807 -182304351 - L1MB1 LINE L1 -5 6163 6053 2441 73 0 3 chr3 35732973 35733273 -182303885 + AluY SINE Alu 1 299 -12 229 331 57 24 chr3 35733432 35733556 -182303602 - MIR SINE MIR -65 197 70 261 373 75 63 chr3 35733992 35734260 -182302898 - L2 LINE L2 0 3272 3002 344 306 124 61 chr3 35734287 35734731 -182302427 - L2 LINE L2 -378 2936 2465 296 127 0 18 chr3 35734800 35734855 -182302303 - MADE1 DNA Mariner 0 80 27 242 114 0 0 chr3 35735049 35735084 -182302074 - U2 snRNA snRNA -152 36 2 230 286 62 62 chr3 35737216 35737394 -182299764 + L2 LINE L2 2800 2977 -337 310 218 82 0 chr3 35737505 35737615 -182299543 - L1ME4a LINE L1 -6 6115 5997 440 300 41 70 chr3 35738394 35738637 -182298521 - MIR SINE MIR -13 249 14 346 284 0 0 chr3 35738810 35738912 -182298246 + (TA)n Simple_repeat Simple_repeat 1 102 0 371 260 40 10 chr3 35739688 35739788 -182297370 + L2 LINE L2 3168 3270 -2 353 255 159 13 chr3 35739798 35739955 -182297203 - MIR SINE MIR -51 211 32 526 289 33 38 chr3 35740105 35740291 -182296867 - MIR SINE MIR -42 220 28 2447 123 5 19 chr3 35740332 35740699 -182296459 + THE1B LTR MaLR 1 362 -2 11610 102 4 2 chr3 35740701 35742279 -182294879 + THE1B-int LTR MaLR 1 1580 0 2259 100 5 95 chr3 35742279 35742678 -182294480 + THE1B LTR MaLR 1 363 -1 426 216 21 89 chr3 35742696 35742886 -182294272 - L1ME3 LINE L1 -29 6133 5957 314 325 175 0 chr3 35743210 35743370 -182293788 - MER91A DNA MER1_type -8 188 1 308 262 244 0 chr3 35744045 35744274 -182292884 - L1ME3 LINE L1 -1000 5146 4862 393 311 57 45 chr3 35744359 35744536 -182292622 - HAL1b LINE L1 -1100 248 70 202 356 0 0 chr3 35746659 35746718 -182290440 - L2 LINE L2 -23 3249 3191 730 276 0 28 chr3 35747288 35747502 -182289656 - MER58A DNA MER1_type -16 208 1 1246 117 0 11 chr3 35747560 35747740 -182289418 + AluSg/x SINE Alu 133 310 -2 207 0 0 0 chr3 35747808 35747831 -182289327 + (TAA)n Simple_repeat Simple_repeat 2 24 0 282 325 123 31 chr3 35748038 35748395 -182288763 + L2 LINE L2 2140 2529 -785 381 234 161 8 chr3 35748853 35748977 -182288181 + MIR SINE MIR 115 257 -5 2264 107 16 47 chr3 35750186 35750571 -182286587 - THE1C LTR MaLR 0 375 3 223 222 0 0 chr3 35751883 35751928 -182285230 - MIR SINE MIR -17 245 201 239 263 0 0 chr3 35752381 35752457 -182284701 + MER113 DNA MER1_type? 2 77 -444 22 70 0 0 chr3 35753395 35753438 -182283720 + AT_rich Low_complexity Low_complexity 1 43 0 190 231 19 19 chr3 35753929 35753981 -182283177 - MIR SINE MIR -90 172 121 1501 136 0 42 chr3 35755245 35755481 -182281677 + AluSg/x SINE Alu 83 308 -2 743 174 0 0 chr3 35755700 35755815 -182281343 + FLAM_A SINE Alu 1 115 -18 2220 99 7 0 chr3 35755907 35756200 -182280958 - AluSq SINE Alu -18 295 1 373 253 0 22 chr3 35756800 35756891 -182280267 - MIR3 SINE MIR -10 198 110 431 250 181 0 chr3 35756971 35757115 -182280043 + MER5A DNA MER1_type 20 189 0 199 313 15 0 chr3 35757801 35757868 -182279290 - L2 LINE L2 -4 3268 3201 191 325 12 77 chr3 35757992 35758161 -182278997 - L2 LINE L2 -182 3090 2933 205 167 37 0 chr3 35758965 35759019 -182278139 + GA-rich Low_complexity Low_complexity 2 57 0 330 280 114 0 chr3 35759019 35759151 -182278007 + MER103 DNA DNA 1 147 -19 192 175 32 111 chr3 35759902 35759965 -182277193 + L2 LINE L2 2697 2754 -560 2304 53 0 3 chr3 35759973 35760292 -182276866 - AluY SINE Alu 0 318 1 189 353 32 39 chr3 35760414 35760570 -182276588 - L2 LINE L2 -833 2481 2327 762 105 21 35 chr3 35760577 35760720 -182276438 - Charlie1 DNA MER1_type -2 2759 2619 * 791 219 37 66 chr3 35760703 35760945 -182276213 - Charlie1 DNA MER1_type -2522 239 5 258 257 54 68 chr3 35761347 35761577 -182275581 - L1MEd LINE L1 -4862 1257 1111 378 283 0 8 chr3 35762614 35762734 -182274424 + MER94 DNA DNA 10 128 -6 507 192 192 6 chr3 35763417 35763569 -182273589 + MER5A DNA MER1_type 4 188 -1 1592 129 0 9 chr3 35763578 35763803 -182273355 + AluSx SINE Alu 1 223 -89 1561 245 78 41 chr3 35764658 35765213 -182271945 - MER119 DNA MER1_type -8 575 1 772 289 44 21 chr3 35765226 35765575 -182271583 - LTR16A1 LTR ERVL -2 455 127 210 191 24 24 chr3 35766540 35766582 -182270576 - MIR SINE MIR -138 70 29 1655 248 85 10 chr3 35766586 35767103 -182270055 + L2 LINE L2 2338 2893 -421 188 65 0 32 chr3 35767813 35767844 -182269314 + (CACCC)n Simple_repeat Simple_repeat 3 32 0 21 0 0 0 chr3 35768708 35768729 -182268429 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr3 35768871 35768891 -182268267 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 186 133 0 0 chr3 35769120 35769150 -182268008 + (CATA)n Simple_repeat Simple_repeat 2 31 0 225 328 141 8 chr3 35769243 35769371 -182267787 - MIR3 SINE MIR -61 147 3 1068 282 102 21 chr3 35770383 35771031 -182266127 - L2 LINE L2 -16 3297 2572 258 200 0 18 chr3 35771061 35771116 -182266042 - L2 LINE L2 -937 2377 2324 2385 94 51 14 chr3 35771177 35771528 -182265630 + THE1B LTR MaLR 1 364 0 456 188 46 11 chr3 35772093 35772334 -182264824 + MER2 DNA MER2_type 2 345 0 354 240 74 25 chr3 35772689 35772810 -182264348 + L1ME4a LINE L1 5968 6094 -27 194 326 22 11 chr3 35772905 35772997 -182264161 - L2 LINE L2 -289 2983 2891 2350 103 0 7 chr3 35773143 35773453 -182263705 + AluSx SINE Alu 1 308 -4 566 248 89 32 chr3 35775373 35775744 -182261414 + L1M4 LINE L1 2955 3346 -2800 2211 99 7 0 chr3 35775744 35776038 -182261120 + AluSx SINE Alu 1 296 -16 311 307 100 32 chr3 35778427 35778766 -182258392 - MLT1J LTR MaLR -75 436 75 1064 186 201 21 chr3 35779016 35779393 -182257765 - MER31B LTR ERV1 -4 510 1 21 0 0 0 chr3 35779696 35779717 -182257441 + AT_rich Low_complexity Low_complexity 1 21 0 5715 243 78 20 chr3 35780488 35780683 -182256475 + L1MA4A LINE L1 119 301 -6548 2248 123 0 0 chr3 35780683 35780985 -182256173 + AluSq SINE Alu 1 302 -11 5715 243 78 20 chr3 35780985 35782476 -182254682 + L1MA4A LINE L1 301 1909 -4940 2249 110 0 3 chr3 35782476 35782776 -182254382 + AluSx SINE Alu 1 299 -13 5715 243 78 20 chr3 35782776 35782799 -182254359 + L1MA4A LINE L1 1909 1929 -4920 * 11733 174 32 33 chr3 35782777 35785364 -182251794 + L1MA4A LINE L1 3190 5775 -1073 6586 65 20 0 chr3 35785364 35786294 -182250864 - L1PA6 LINE L1 0 6154 5203 11733 174 32 33 chr3 35786294 35786553 -182250605 + L1MA4A LINE L1 5775 6033 -815 828 128 0 0 chr3 35786550 35786683 -182250475 - L1PA8 LINE L1 -938 5208 5076 * 6877 70 1 13 chr3 35786683 35786918 -182250240 + L1PA8 LINE L1 5206 5442 -730 2303 114 0 0 chr3 35786918 35787216 -182249942 + AluSg SINE Alu 1 298 -12 6877 70 1 13 chr3 35787216 35787953 -182249205 + L1PA8 LINE L1 5442 6168 -4 3960 140 17 3 chr3 35787954 35788647 -182248511 + L1MA4A LINE L1 6022 6724 -281 22 0 0 0 chr3 35792448 35792470 -182244688 + AT_rich Low_complexity Low_complexity 1 22 0 490 261 36 12 chr3 35793498 35793663 -182243495 + L2 LINE L2 3096 3264 -49 303 306 0 0 chr3 35793665 35793750 -182243408 - MER5B DNA MER1_type -93 85 1 2303 84 44 0 chr3 35794338 35794635 -182242523 + AluSp SINE Alu 1 310 -3 751 269 57 0 chr3 35794884 35795077 -182242081 + MIR SINE MIR 9 212 -50 282 259 49 12 chr3 35795062 35795143 -182242015 - MIR SINE MIR -13 249 166 * 182 413 130 0 chr3 35795737 35795967 -182241191 + L2 LINE L2 3030 3289 -24 368 339 24 8 chr3 35796053 35796177 -182240981 - L2 LINE L2 0 3313 3188 550 291 195 5 chr3 35798474 35798684 -182238474 + MIR SINE MIR 13 262 0 286 258 0 45 chr3 35798828 35798894 -182238264 + MIR SINE MIR 20 82 -180 201 125 50 0 chr3 35800813 35800853 -182236305 - L2 LINE L2 -2 3311 3270 1513 268 153 52 chr3 35802275 35803003 -182234155 + L2 LINE L2 2090 2962 -351 1086 218 20 96 chr3 35803003 35803335 -182233823 + MLT1A1 LTR MaLR 1 300 -65 1508 216 7 10 chr3 35803335 35803626 -182233532 + AluJo SINE Alu 2 291 -21 1086 218 20 96 chr3 35803626 35803687 -182233471 + MLT1A1 LTR MaLR 300 364 -1 1513 268 153 52 chr3 35803687 35804038 -182233120 + L2 LINE L2 2962 3276 -37 321 164 194 0 chr3 35804594 35804661 -182232497 - MER5C DNA MER1_type -2 322 243 383 202 18 79 chr3 35804720 35804834 -182232324 - MER5C DNA MER1_type -200 124 18 2212 112 10 3 chr3 35806027 35806323 -182230835 + AluSx SINE Alu 1 298 -14 645 174 14 7 chr3 35806769 35806907 -182230251 + L1MD3 LINE L1 7840 7978 -17 266 231 103 13 chr3 35807544 35807622 -182229536 - MIR3 SINE MIR -43 165 81 196 280 0 20 chr3 35808105 35808155 -182229003 - L2 LINE L2 -15 3257 3209 351 173 160 0 chr3 35808659 35808734 -182228424 - L2 LINE L2 0 3313 3227 5499 121 4 4 chr3 35810274 35811658 -182225500 - L1P4 LINE L1 -352 5822 4441 235 293 38 38 chr3 35811801 35811907 -182225251 - MIR SINE MIR 0 262 157 198 294 0 0 chr3 35812444 35812495 -182224663 + MIR SINE MIR 211 261 -1 180 111 0 0 chr3 35812534 35812561 -182224597 + (TAG)n Simple_repeat Simple_repeat 3 29 0 300 96 19 19 chr3 35812749 35812801 -182224357 - MIR SINE MIR -121 141 90 613 308 13 36 chr3 35813542 35813766 -182223392 + MIR SINE MIR 18 236 -26 2097 119 0 35 chr3 35815338 35815648 -182221510 + AluSg SINE Alu 1 299 -11 1950 223 85 31 chr3 35815686 35816237 -182220921 + MLT1E LTR MaLR 2 582 -11 197 204 82 0 chr3 35816253 35816302 -182220856 - L2 LINE L2 -1 3271 3219 1824 143 11 0 chr3 35816940 35817213 -182219945 - AluSx SINE Alu -30 282 7 1548 105 5 5 chr3 35817397 35817606 -182219552 + AluSx SINE Alu 1 209 -103 662 211 88 14 chr3 35817603 35817750 -182219408 + AluJo/FRAM SINE Alu 145 302 -10 2955 236 53 30 chr3 35817889 35818731 -182218427 + L1ME2 LINE L1 5293 6154 -10 2570 216 104 64 chr3 35818746 35819771 -182217387 + L1MC5 LINE L1 6607 7678 -283 490 228 26 47 chr3 35819797 35819990 -182217168 + L1MC5 LINE L1 7756 7944 -17 2375 36 39 42 chr3 35820081 35820389 -182216769 - AluY SINE Alu -4 307 1 791 203 58 76 chr3 35821575 35821697 -182215461 + ORSL DNA AcHobo 1 124 -151 2421 74 0 0 chr3 35821697 35821995 -182215163 + AluY SINE Alu 1 298 -13 186 43 0 0 chr3 35821995 35822018 -182215140 + (TA)n Simple_repeat Simple_repeat 1 23 0 791 203 58 76 chr3 35822018 35822170 -182214988 + ORSL DNA AcHobo 122 271 -4 28 48 0 0 chr3 35822616 35822658 -182214500 + GC_rich Low_complexity Low_complexity 1 42 0 326 119 48 0 chr3 35822730 35822814 -182214344 + (CCG)n Simple_repeat Simple_repeat 3 90 0 587 149 43 0 chr3 35824285 35824379 -182212779 + AluS SINE Alu 2 99 -213 1651 113 34 8 chr3 35824379 35824618 -182212540 + AluSx SINE Alu 54 298 -14 1077 90 8 0 chr3 35825716 35825850 -182211308 + AluY SINE Alu 1 135 -176 202 180 60 20 chr3 35825851 35825951 -182211207 + A-rich Low_complexity Low_complexity 1 104 0 557 163 96 22 chr3 35827266 35827331 -182209827 - MER69 DNA AcHobo 0 2526 2467 2123 120 3 22 chr3 35827331 35827673 -182209485 + AluSx SINE Alu 1 312 0 557 163 96 22 chr3 35827673 35827742 -182209416 - MER69 DNA AcHobo -59 2467 2382 313 217 0 0 chr3 35827895 35827955 -182209203 - MER69 DNA AcHobo -2465 61 2 1875 151 10 10 chr3 35828226 35828518 -182208640 + AluSx SINE Alu 1 292 -20 254 273 0 0 chr3 35828546 35828612 -182208546 - L1ME1 LINE L1 -50 6116 6051 22 0 0 0 chr3 35828657 35828679 -182208479 + AT_rich Low_complexity Low_complexity 1 22 0 312 27 0 0 chr3 35828886 35828923 -182208235 + (TG)n Simple_repeat Simple_repeat 2 38 0 2307 123 27 6 chr3 35828945 35829311 -182207847 + THE1C LTR MaLR 2 375 0 809 301 15 4 chr3 35829791 35830050 -182207108 + MIR SINE MIR 1 262 0 2253 102 3 10 chr3 35830524 35830828 -182206330 + AluSx SINE Alu 1 302 -10 1133 136 27 0 chr3 35831512 35831696 -182205462 - MER57B LTR ERV1 0 434 246 2184 120 3 0 chr3 35832066 35832374 -182204784 + AluSx SINE Alu 1 309 -3 1841 153 27 17 chr3 35832587 35832882 -182204276 + AluJo SINE Alu 2 299 -13 25 65 0 0 chr3 35832927 35832973 -182204185 + AT_rich Low_complexity Low_complexity 1 46 0 2379 89 0 10 chr3 35833032 35833346 -182203812 + AluSx SINE Alu 1 311 -1 359 327 20 20 chr3 35834381 35834531 -182202627 - L2 LINE L2 0 3272 3123 621 251 112 18 chr3 35834793 35835016 -182202142 - MIR SINE MIR -3 259 16 244 255 0 0 chr3 35835359 35835410 -182201748 + L2 LINE L2 3219 3269 -3 454 273 70 0 chr3 35835419 35835547 -182201611 - LTR16C LTR ERVL 0 491 355 1709 182 20 0 chr3 35835547 35835844 -182201314 + AluJb SINE Alu 1 303 -9 599 259 184 9 chr3 35835847 35836075 -182201083 - MER57B LTR ERV1 -165 269 2 241 246 0 31 chr3 35836261 35836326 -182200832 + GA-rich Low_complexity Low_complexity 3 65 0 2313 76 31 0 chr3 35837212 35837503 -182199655 + AluY SINE Alu 1 300 -11 426 306 126 10 chr3 35838185 35838208 -182198950 + MIR SINE MIR 1 20 -242 1807 172 47 0 chr3 35838208 35838504 -182198654 + AluJo SINE Alu 1 310 -2 426 306 126 10 chr3 35838504 35838679 -182198479 + MIR SINE MIR 20 222 -40 653 206 22 15 chr3 35839202 35839338 -182197820 - FLAM_A SINE Alu 0 142 6 355 217 9 85 chr3 35839357 35839463 -182197695 - L1ME LINE L1 -443 5719 5622 256 310 0 0 chr3 35839512 35839583 -182197575 + L2 LINE L2 3188 3258 -55 1793 189 46 9 chr3 35839584 35839933 -182197225 - MLT1A2 LTR MaLR -7 367 6 * 2324 180 27 56 chr3 35839930 35840414 -182196744 + MER82 DNA MER2_type 162 631 -22 262 274 0 0 chr3 35840615 35840677 -182196481 + L2 LINE L2 3201 3262 -10 291 273 68 15 chr3 35841765 35841897 -182195261 + L1ME4a LINE L1 5966 6104 -17 2137 208 223 52 chr3 35842028 35842812 -182194346 + L1MC3 LINE L1 6176 7093 -692 409 245 0 32 chr3 35842812 35842906 -182194252 + MLT1F1 LTR MaLR 35 125 -442 383 220 44 11 chr3 35842936 35843027 -182194131 - MER5A DNA MER1_type -95 94 1 381 216 6 16 chr3 35843293 35843386 -182193772 - MER5A DNA MER1_type 0 189 86 966 208 47 24 chr3 35843389 35843644 -182193514 - MIR SINE MIR 0 262 2 828 285 162 15 chr3 35843666 35844006 -182193152 - LTR16C LTR ERVL -3 488 99 1686 179 0 38 chr3 35844102 35844415 -182192743 - AluJo SINE Alu -11 301 1 1142 181 177 12 chr3 35844545 35844794 -182192364 + AluSc SINE Alu 1 290 -9 2311 111 0 0 chr3 35844865 35845162 -182191996 + AluSx SINE Alu 1 297 -15 25 51 0 0 chr3 35846100 35846139 -182191019 + AT_rich Low_complexity Low_complexity 1 39 0 1709 168 45 0 chr3 35846144 35846430 -182190728 + AluJo SINE Alu 3 301 -11 21 36 0 0 chr3 35846658 35846686 -182190472 + AT_rich Low_complexity Low_complexity 1 28 0 262 247 12 12 chr3 35846826 35846907 -182190251 + L2 LINE L2 3198 3278 -35 21 36 0 0 chr3 35848531 35848559 -182188599 + AT_rich Low_complexity Low_complexity 1 28 0 1283 187 0 123 chr3 35849206 35849342 -182187816 + AluSx SINE Alu 3 73 -239 1687 127 4 4 chr3 35849342 35849579 -182187579 + AluSg SINE Alu 61 297 -13 1283 187 0 123 chr3 35849579 35849784 -182187374 + AluSx SINE Alu 73 302 -10 1578 152 3 87 chr3 35850244 35850580 -182186578 - AluJo SINE Alu 0 310 1 559 226 91 178 chr3 35851096 35851261 -182185897 - Charlie8 DNA MER1_type -1892 525 347 2115 136 13 3 chr3 35851261 35851563 -182185595 - AluSx SINE Alu -7 305 1 559 226 91 178 chr3 35851563 35851969 -182185189 - Charlie8 DNA MER1_type -2070 347 4 1288 187 11 41 chr3 35852946 35853214 -182183944 - AluJb SINE Alu -52 260 1 2096 121 0 3 chr3 35853223 35853534 -182183624 - AluSx SINE Alu 0 310 1 560 225 33 7 chr3 35853538 35853689 -182183469 + L1M4 LINE L1 4849 5003 -1143 1260 111 82 19 chr3 35853690 35853898 -182183260 + AluSq SINE Alu 85 305 -8 1942 160 0 10 chr3 35854035 35854341 -182182817 - AluSx SINE Alu -9 303 1 881 139 13 6 chr3 35854344 35854502 -182182656 - L1MA5 LINE L1 0 6300 6142 1387 151 37 4 chr3 35854566 35854840 -182182318 - L1MA5 LINE L1 -23 6145 5875 202 336 16 8 chr3 35854905 35855033 -182182125 + GA-rich Low_complexity Low_complexity 1 129 0 2152 131 0 16 chr3 35857105 35857417 -182179741 + AluSq SINE Alu 1 307 -6 2353 104 7 0 chr3 35857418 35857726 -182179432 + AluSq SINE Alu 1 310 -3 384 247 31 12 chr3 35857828 35857990 -182179168 + (TA)n Simple_repeat Simple_repeat 1 165 0 2089 113 51 0 chr3 35858315 35858608 -182178550 - AluSg SINE Alu -2 308 1 607 200 0 0 chr3 35858752 35858852 -182178306 - AluJ/FLAM SINE Alu -211 101 2 261 314 14 0 chr3 35858884 35858954 -182178204 + MLT1J LTR MaLR 110 180 -331 * 284 242 32 0 chr3 35858924 35858986 -182178172 + MLT1L LTR MaLR 215 278 -337 231 265 29 0 chr3 35859357 35859425 -182177733 + GA-rich Low_complexity Low_complexity 3 72 0 4039 140 13 13 chr3 35859496 35859680 -182177478 - MER41B LTR ERV1 0 635 452 2122 110 7 26 chr3 35859680 35859989 -182177169 - AluSx SINE Alu -9 303 1 4039 140 13 13 chr3 35859989 35860439 -182176719 - MER41B LTR ERV1 -182 453 1 2002 160 0 3 chr3 35860644 35860957 -182176201 + AluJb SINE Alu 1 312 0 248 212 52 40 chr3 35861261 35861384 -182175774 + LTR16C LTR ERVL 333 490 -1 1316 184 98 133 chr3 35862634 35862714 -182174444 - L1ME2 LINE L1 -9 6155 6074 2128 120 0 22 chr3 35862714 35863031 -182174127 + AluSx SINE Alu 1 310 -2 1316 184 98 133 chr3 35863031 35863257 -182173901 - L1ME2 LINE L1 -90 6074 5872 2154 125 0 0 chr3 35863257 35863546 -182173612 - AluSg SINE Alu -21 289 1 1316 184 98 133 chr3 35863546 35863766 -182173392 - L1ME2 LINE L1 -292 5872 5646 1380 168 111 68 chr3 35863790 35864214 -182172944 + LTR7 LTR ERV1 1 442 -8 2296 166 60 56 chr3 35864222 35865083 -182172075 + HERVH LTR ERV1 1 1182 -6531 1466 157 4 25 chr3 35865081 35865355 -182171803 + HERVH LTR ERV1 2728 2995 -4718 * 3570 142 9 8 chr3 35865334 35866581 -182170577 + HERVH LTR ERV1 3140 5286 -1805 1628 153 10 37 chr3 35866884 35867178 -182169980 - AluJb SINE Alu -18 294 9 248 205 0 58 chr3 35867554 35867779 -182169379 + AluJo SINE Alu 2 291 -11 436 225 62 62 chr3 35868517 35868695 -182168463 + MIR SINE MIR 32 209 -53 2063 130 0 3 chr3 35868884 35869168 -182167990 + AluSx SINE Alu 1 283 -29 1946 124 13 23 chr3 35869212 35869511 -182167647 + AluSx SINE Alu 1 296 -16 1249 73 11 0 chr3 35869631 35869809 -182167349 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 837 141 0 37 chr3 35869827 35869962 -182167196 + AluSq/x SINE Alu 2 131 -182 949 104 0 0 chr3 35869968 35870102 -182167056 - AluSg/x SINE Alu -2 310 177 554 178 28 188 chr3 35870113 35870326 -182166832 - MER74A LTR ERVL -350 208 30 2036 165 8 61 chr3 35870372 35870767 -182166391 - MLT1B LTR MaLR 0 390 17 1932 112 76 0 chr3 35870802 35871079 -182166079 + AluSp SINE Alu 1 298 -15 2060 122 14 0 chr3 35871246 35871554 -182165604 + AluSx SINE Alu 1 312 0 330 87 0 0 chr3 35871870 35871916 -182165242 + (CA)n Simple_repeat Simple_repeat 2 47 0 2158 110 17 3 chr3 35872218 35872509 -182164649 - AluSq SINE Alu -18 295 1 277 269 25 42 chr3 35872583 35872702 -182164456 - LTR67 LTR ERVL 0 557 441 1869 140 63 3 chr3 35873345 35873631 -182163527 - AluJb SINE Alu -9 303 1 1751 141 8 4 chr3 35873642 35873904 -182163254 - AluSx SINE Alu -17 295 33 449 129 0 0 chr3 35873904 35873966 -182163192 - AluS SINE Alu -246 67 6 423 248 35 35 chr3 35873982 35874095 -182163063 + MLT1J2 LTR MaLR 87 199 -251 2318 112 0 3 chr3 35874097 35874410 -182162748 - AluSx SINE Alu 0 312 1 1240 124 0 0 chr3 35874420 35874597 -182162561 - AluSq SINE Alu 0 313 137 2287 111 3 0 chr3 35874617 35874914 -182162244 - AluSq SINE Alu -15 298 1 367 360 37 0 chr3 35875071 35875207 -182161951 + MIR3 SINE MIR 14 154 -54 243 227 91 0 chr3 35875972 35876038 -182161120 - L2 LINE L2 -1 3312 3241 1182 122 6 0 chr3 35876085 35876249 -182160909 - AluSg/x SINE Alu -9 301 137 265 162 14 14 chr3 35878064 35878138 -182159020 + CT-rich Low_complexity Low_complexity 3 76 0 2276 105 3 7 chr3 35878214 35878509 -182158649 + AluSx SINE Alu 1 294 -18 1355 215 33 10 chr3 35878628 35878930 -182158228 + AluJo SINE Alu 3 311 -1 2310 98 0 19 chr3 35878930 35879245 -182157913 + AluY SINE Alu 1 309 -2 2275 67 44 10 chr3 35879325 35879622 -182157536 + AluY SINE Alu 1 307 -4 1074 168 31 75 chr3 35880706 35880838 -182156320 + MER20 DNA MER1_type 1 120 -99 1520 232 118 47 chr3 35880838 35881261 -182155897 - LTR27 LTR ERV1 -1 635 157 2008 152 7 0 chr3 35881261 35881557 -182155601 + AluSp SINE Alu 1 298 -15 1520 232 118 47 chr3 35881557 35881724 -182155434 - LTR27 LTR ERV1 -479 157 3 1074 168 31 75 chr3 35881724 35881817 -182155341 + MER20 DNA MER1_type 120 216 -3 341 300 30 0 chr3 35882597 35882697 -182154461 + MIR SINE MIR 4 106 -156 23 0 0 0 chr3 35882697 35882720 -182154438 + AT_rich Low_complexity Low_complexity 1 23 0 1137 142 0 0 chr3 35882721 35882883 -182154275 - AluSg/x SINE Alu -22 290 129 184 98 244 0 chr3 35882887 35882928 -182154230 + MIR SINE MIR 93 143 -119 783 170 7 15 chr3 35882935 35883070 -182154088 - AluJo SINE Alu -177 135 2 337 214 36 12 chr3 35883442 35883526 -182153632 + LTR16A1 LTR ERVL 346 431 -26 347 224 0 0 chr3 35883526 35883593 -182153565 + MIR SINE MIR 186 252 -10 2105 114 3 7 chr3 35884085 35884374 -182152784 + AluSx SINE Alu 1 288 -24 183 344 0 16 chr3 35884595 35884656 -182152502 + L2 LINE L2 3127 3186 -86 705 175 0 8 chr3 35884961 35885081 -182152077 + FLAM_A SINE Alu 16 134 -8 226 291 116 0 chr3 35885261 35885347 -182151811 + MIR3 SINE MIR 65 160 -48 905 230 10 0 chr3 35885352 35885552 -182151606 - MER3 DNA MER1_type -5 204 3 2180 100 7 23 chr3 35885654 35885955 -182151203 + AluSx SINE Alu 1 296 -16 2209 116 39 0 chr3 35886326 35886662 -182150496 - L1PA11 LINE L1 -4 6170 5822 438 206 40 29 chr3 35886783 35886958 -182150200 + (TATAA)n Simple_repeat Simple_repeat 4 180 0 2075 111 36 16 chr3 35887085 35887391 -182149767 - AluSx SINE Alu 0 312 1 329 158 40 13 chr3 35887786 35887862 -182149296 - L1MC4 LINE L1 0 8042 7965 1863 185 25 11 chr3 35887863 35888219 -182148939 + MLT1A2 LTR MaLR 1 361 -13 621 123 0 290 chr3 35888223 35888419 -182148739 - L1MC4 LINE L1 -75 7967 7716 1832 72 5 0 chr3 35888419 35888641 -182148517 + AluSp SINE Alu 1 223 -90 260 111 0 0 chr3 35888641 35888686 -182148472 + AluSp SINE Alu 257 301 -2 621 123 0 290 chr3 35888686 35888700 -182148458 - L1MC4 LINE L1 -325 7717 7864 2344 96 0 0 chr3 35888700 35888993 -182148165 + AluSg1 SINE Alu 1 293 -16 621 123 0 290 chr3 35888993 35889133 -182148025 - L1MC4 LINE L1 -177 7865 7686 401 328 8 8 chr3 35889148 35889282 -182147876 + MIR SINE MIR 126 259 -3 724 218 163 44 chr3 35889927 35890246 -182146912 + MLT1J1 LTR MaLR 104 433 -13 231 253 40 27 chr3 35890282 35890357 -182146801 + MIR SINE MIR 37 112 -96 1711 180 7 7 chr3 35890658 35890963 -182146195 - AluJo SINE Alu -7 305 1 1661 166 254 56 chr3 35891002 35891521 -182145637 - LTR29 LTR ERV1 0 622 1 1712 143 51 11 chr3 35891564 35891861 -182145297 + AluJb SINE Alu 1 308 0 2080 136 3 0 chr3 35891974 35892260 -182144898 - AluSg SINE Alu -23 287 1 187 310 46 23 chr3 35892986 35893073 -182144085 + MIR3 SINE MIR 98 186 -22 214 328 171 26 chr3 35893246 35893627 -182143531 - L2 LINE L2 -468 2846 2411 519 214 0 10 chr3 35893665 35893763 -182143395 + AluSp SINE Alu 113 209 -104 1290 181 107 65 chr3 35893763 35894195 -182142963 + LTR7 LTR ERV1 1 450 0 2716 136 11 24 chr3 35894195 35894660 -182142498 + HERVH LTR ERV1 1 459 -7254 292 221 91 28 chr3 35894642 35894844 -182142314 + HERVH LTR ERV1 346 620 -7093 * 10527 103 9 32 chr3 35894831 35896430 -182140728 + HERVH LTR ERV1 756 2317 -5396 2286 114 3 0 chr3 35896655 35896963 -182140195 - AluSc SINE Alu 0 309 1 1563 180 7 20 chr3 35897529 35897824 -182139334 - AluJo SINE Alu -21 291 1 2191 112 0 3 chr3 35897927 35898223 -182138935 + AluSx SINE Alu 1 295 -17 186 43 0 0 chr3 35898582 35898605 -182138553 + (GA)n Simple_repeat Simple_repeat 2 24 0 367 219 104 0 chr3 35898747 35898843 -182138315 + MER53 DNA DNA 2 107 -82 227 354 107 41 chr3 35898898 35899475 -182137683 - L2 LINE L2 -2 3270 2656 310 104 0 0 chr3 35899582 35899630 -182137528 - Alu SINE Alu -17 285 238 525 146 146 0 chr3 35899632 35899721 -182137437 + AluJo SINE Alu 72 173 -139 * 595 50 25 12 chr3 35899718 35899798 -182137360 + AluSg/x SINE Alu 219 299 -11 2252 118 0 3 chr3 35899801 35900097 -182137061 + AluSq SINE Alu 1 295 -18 21 36 0 0 chr3 35900482 35900510 -182136648 + AT_rich Low_complexity Low_complexity 1 28 0 502 154 13 0 chr3 35900517 35900595 -182136563 + MER51A LTR ERV1 469 547 -87 432 278 120 0 chr3 35900606 35900714 -182136444 - AluSq/x SINE Alu -181 121 1 1540 165 0 0 chr3 35900739 35900969 -182136189 + AluJb SINE Alu 1 230 -82 189 107 0 0 chr3 35900985 35901013 -182136145 + (A)n Simple_repeat Simple_repeat 1 28 0 400 243 98 35 chr3 35901021 35901194 -182135964 - MIR SINE MIR -32 230 47 785 71 0 0 chr3 35901486 35901584 -182135574 - HY3 scRNA scRNA -2 99 2 448 363 50 40 chr3 35901649 35901993 -182135165 + L3 LINE CR1 265 615 -962 1834 172 0 13 chr3 35901993 35902295 -182134863 - AluJb SINE Alu -11 301 4 448 363 50 40 chr3 35902295 35902349 -182134809 + L3 LINE CR1 615 667 -910 368 275 63 7 chr3 35902363 35902505 -182134653 + L2 LINE L2 2267 2416 -898 350 301 63 121 chr3 35902514 35902943 -182134215 - MLT1K LTR MaLR -5 583 180 1347 160 44 0 chr3 35903072 35903297 -182133861 - AluJo SINE Alu -8 304 70 910 201 115 63 chr3 35903297 35903680 -182133478 - LTR7 LTR ERV1 0 450 48 5879 131 36 32 chr3 35903816 35905191 -182131967 - L1MA4 LINE L1 -2 6298 4900 226 262 16 0 chr3 35905271 35905332 -182131826 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 311 0 0 25 chr3 35906123 35906163 -182130995 + (TG)n Simple_repeat Simple_repeat 2 40 0 407 258 10 93 chr3 35906618 35906812 -182130346 - MER5B DNA MER1_type 0 178 1 884 203 7 0 chr3 35906822 35906975 -182130183 + FRAM SINE Alu 4 157 -19 2406 87 7 0 chr3 35907541 35907851 -182129307 - AluSp SINE Alu -1 312 1 2287 123 0 0 chr3 35908980 35909290 -182127868 + AluSx SINE Alu 1 310 -2 245 339 46 23 chr3 35910042 35910216 -182126942 - MIR3 SINE MIR -1 207 30 306 254 51 43 chr3 35910284 35910422 -182126736 + L2 LINE L2 2934 3072 -200 1951 77 168 34 chr3 35910984 35911297 -182125861 - MER39B LTR ERV1 -244 409 43 222 37 0 0 chr3 35911297 35911324 -182125834 + (GA)n Simple_repeat Simple_repeat 1 27 0 1951 77 168 34 chr3 35911324 35911361 -182125797 - MER39B LTR ERV1 -610 43 12 218 200 40 0 chr3 35911727 35911777 -182125381 + T-rich Low_complexity Low_complexity 5 56 0 1965 116 3 21 chr3 35911796 35912081 -182125077 - AluSx SINE Alu -32 280 1 1372 140 8 29 chr3 35912082 35912325 -182124833 + MER39B LTR ERV1 413 650 -3 2298 96 0 23 chr3 35912383 35912684 -182124474 + AluSg SINE Alu 1 294 -16 2095 123 7 3 chr3 35912709 35913018 -182124140 + AluSg SINE Alu 1 310 0 238 262 74 66 chr3 35913035 35913157 -182124001 - MLT1L LTR MaLR -348 267 145 435 242 128 40 chr3 35913377 35913526 -182123632 - MIR SINE MIR -54 208 47 180 286 0 48 chr3 35913625 35913688 -182123470 - L2 LINE L2 -4 3268 3209 247 300 0 0 chr3 35914064 35914134 -182123024 - MER117 DNA MER1_type -50 147 78 1676 151 88 18 chr3 35914194 35914376 -182122782 + AluJb SINE Alu 1 169 -143 2633 187 57 88 chr3 35914376 35914555 -182122603 - LTR8A LTR ERV1 0 727 544 1790 105 93 0 chr3 35914555 35914851 -182122307 - AluSg SINE Alu 0 320 1 2633 187 57 88 chr3 35914851 35914880 -182122278 - LTR8A LTR ERV1 -183 544 516 2236 110 3 0 chr3 35914880 35915172 -182121986 - AluSq SINE Alu -20 293 1 2633 187 57 88 chr3 35915172 35915711 -182121447 - LTR8A LTR ERV1 -211 516 1 1676 151 88 18 chr3 35915711 35915813 -182121345 + AluJb SINE Alu 169 305 -7 526 336 40 5 chr3 35915894 35916117 -182121041 - MIR SINE MIR -31 231 1 751 122 9 0 chr3 35916519 35916626 -182120532 - AluSg/x SINE Alu -11 298 191 2345 112 0 0 chr3 35916822 35917126 -182120032 - AluSg1 SINE Alu -5 304 1 905 211 26 5 chr3 35917172 35917362 -182119796 + L1ME LINE L1 5464 5657 -507 1808 161 3 14 chr3 35917362 35917648 -182119510 + AluJo SINE Alu 1 283 -29 1321 162 92 123 chr3 35917649 35918105 -182119053 - LTR7 LTR ERV1 -8 442 1 3078 81 7 11 chr3 35918105 35918538 -182118620 - HERVH LTR ERV1 0 7713 7283 3468 132 0 8 chr3 35918541 35919034 -182118124 - HERVH LTR ERV1 -2697 5016 4528 302 289 54 66 chr3 35919163 35919329 -182117829 - L3 LINE CR1 -267 1310 1147 230 285 198 11 chr3 35919852 35919981 -182117177 - MIR SINE MIR -60 148 33 786 290 125 37 chr3 35919987 35920200 -182116958 + MLT1K LTR MaLR 10 203 -385 180 0 0 0 chr3 35920200 35920220 -182116938 + (TTTTA)n Simple_repeat Simple_repeat 4 23 0 786 290 125 37 chr3 35920220 35920231 -182116927 + MLT1K LTR MaLR 203 212 -376 2053 124 28 0 chr3 35920231 35920513 -182116645 - AluSg SINE Alu -20 290 1 786 290 125 37 chr3 35920513 35920752 -182116406 + MLT1K LTR MaLR 212 515 -73 231 288 27 0 chr3 35920764 35920837 -182116321 + CT-rich Low_complexity Low_complexity 5 79 0 2275 176 24 12 chr3 35921020 35921441 -182115717 + MSTB LTR MaLR 1 426 0 2203 113 3 0 chr3 35921493 35921786 -182115372 - AluSg SINE Alu -16 294 1 471 271 16 39 chr3 35921795 35921924 -182115234 - MIR SINE MIR -67 141 16 333 329 63 14 chr3 35921934 35922077 -182115081 + MIR3 SINE MIR 43 192 -16 183 129 0 0 chr3 35922169 35922200 -182114958 + (CA)n Simple_repeat Simple_repeat 1 31 0 2202 119 0 10 chr3 35922642 35922945 -182114213 - AluSg1 SINE Alu -8 301 2 28 29 0 0 chr3 35922945 35922980 -182114178 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr3 35923003 35923024 -182114134 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1914 160 0 0 chr3 35923027 35923314 -182113844 - AluSx SINE Alu -25 287 1 1460 204 83 39 chr3 35923512 35923923 -182113235 - MER21A LTR ERV1 0 931 503 1140 181 18 9 chr3 35923996 35924217 -182112941 - MER21B LTR ERV1 -638 225 3 23 68 0 0 chr3 35924613 35924657 -182112501 + AT_rich Low_complexity Low_complexity 1 44 0 1588 101 18 0 chr3 35924695 35924914 -182112244 - AluSg1 SINE Alu -86 223 1 851 204 81 50 chr3 35924950 35925015 -182112143 - MSTD LTR MaLR -7 389 327 2250 107 3 13 chr3 35925015 35925313 -182111845 + AluSx SINE Alu 1 295 -17 851 204 81 50 chr3 35925313 35925507 -182111651 - MSTD LTR MaLR -69 327 122 844 158 0 0 chr3 35925507 35925634 -182111524 + FLAM_C SINE Alu 1 127 -16 39 60 0 0 chr3 35925636 35925703 -182111455 + AT_rich Low_complexity Low_complexity 1 67 0 1474 193 0 63 chr3 35925704 35926035 -182111123 + AluJo SINE Alu 1 312 0 601 130 20 0 chr3 35926041 35926141 -182111017 - MSTD LTR MaLR -294 102 1 2262 128 0 3 chr3 35927002 35927315 -182109843 + AluSx SINE Alu 1 312 0 29 47 0 0 chr3 35927435 35927478 -182109680 + AT_rich Low_complexity Low_complexity 1 43 0 2748 144 45 19 chr3 35927478 35927914 -182109244 + L1MC2 LINE L1 5818 6270 -74 2335 98 0 10 chr3 35927914 35928220 -182108938 - AluSx SINE Alu -9 303 1 2748 144 45 19 chr3 35928220 35928295 -182108863 + L1MC2 LINE L1 6270 6342 -2 1926 115 0 77 chr3 35928615 35928927 -182108231 - AluSx SINE Alu -24 288 1 2380 102 0 3 chr3 35928953 35929266 -182107892 - AluSq SINE Alu -1 312 1 22 0 0 0 chr3 35929790 35929812 -182107346 + AT_rich Low_complexity Low_complexity 1 22 0 1650 183 74 0 chr3 35929812 35930097 -182107061 - AluJb SINE Alu -6 306 1 652 219 8 0 chr3 35930162 35930285 -182106873 - FLAM_C SINE Alu -19 124 1 402 223 45 0 chr3 35930292 35930404 -182106754 - L1M4 LINE L1 -3476 4089 3973 738 156 33 0 chr3 35930406 35930528 -182106630 + AluJo/FLAM SINE Alu 2 127 -175 2011 121 11 4 chr3 35930531 35930852 -182106306 + AluSq SINE Alu 1 323 0 1102 118 7 0 chr3 35930856 35931008 -182106150 + AluSq SINE Alu 1 153 -160 24 0 0 0 chr3 35931022 35931046 -182106112 + AT_rich Low_complexity Low_complexity 1 24 0 586 229 30 3 chr3 35931046 35931246 -182105912 - L1M4 LINE L1 -3945 3620 3419 828 178 0 0 chr3 35931403 35931532 -182105626 + FLAM_C SINE Alu 2 130 -3 2311 107 3 0 chr3 35931537 35931845 -182105313 + AluSp SINE Alu 1 309 -4 2205 142 3 0 chr3 35931961 35932270 -182104888 + AluSq SINE Alu 1 310 -3 2225 78 3 20 chr3 35932271 35932566 -182104592 + AluSp SINE Alu 1 290 -23 1140 309 109 5 chr3 35932566 35933171 -182103987 - L2 LINE L2 -25 3288 2627 1910 250 45 24 chr3 35933201 35933733 -182103425 + MLT1E LTR MaLR 51 593 0 760 253 39 0 chr3 35933733 35933915 -182103243 - L2 LINE L2 -678 2636 2448 2220 106 3 0 chr3 35933990 35934283 -182102875 + AluSp SINE Alu 1 294 -19 226 150 50 50 chr3 35934531 35934591 -182102567 + LTR32 LTR ERVL 320 379 -92 2193 94 7 10 chr3 35934601 35934908 -182102250 + AluSx SINE Alu 1 306 -6 240 234 13 39 chr3 35934978 35935055 -182102103 + GA-rich Low_complexity Low_complexity 1 75 0 746 125 0 76 chr3 35935107 35935251 -182101907 + FLAM_C SINE Alu 11 143 0 225 119 0 0 chr3 35935442 35935484 -182101674 + (TG)n Simple_repeat Simple_repeat 2 43 0 2294 98 3 3 chr3 35935507 35935813 -182101345 + AluSq SINE Alu 1 306 -7 1066 186 55 122 chr3 35935873 35936064 -182101094 + MLT2C2 LTR ERVL 52 254 -210 2259 88 0 7 chr3 35936064 35936372 -182100786 + AluSg SINE Alu 1 306 0 1066 186 55 122 chr3 35936372 35936572 -182100586 + MLT2C2 LTR ERVL 254 415 -49 450 53 0 0 chr3 35936572 35936629 -182100529 + (CA)n Simple_repeat Simple_repeat 1 57 0 1066 186 55 122 chr3 35936629 35936671 -182100487 + MLT2C2 LTR ERVL 415 458 -6 305 245 0 0 chr3 35936679 35936732 -182100426 - MER45 DNA AcHobo -900 53 1 181 235 0 111 chr3 35937153 35937234 -182099924 - L2 LINE L2 -106 3207 3136 1678 179 6 39 chr3 35937235 35937599 -182099559 + MLT1A1 LTR MaLR 1 352 -13 436 315 25 31 chr3 35937617 35937779 -182099379 - L2 LINE L2 -303 3010 2850 1936 89 0 0 chr3 35937786 35938022 -182099136 + AluSx SINE Alu 7 242 -70 221 0 0 33 chr3 35938036 35938066 -182099092 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr3 35938103 35938126 -182099032 + AT_rich Low_complexity Low_complexity 1 23 0 412 290 112 35 chr3 35938251 35938420 -182098738 + MIR SINE MIR 81 262 0 207 241 19 0 chr3 35938428 35938482 -182098676 + (TTA)n Simple_repeat Simple_repeat 2 56 0 342 0 0 0 chr3 35938579 35938617 -182098541 + (TG)n Simple_repeat Simple_repeat 1 38 0 2006 110 26 0 chr3 35938617 35938889 -182098269 - AluSx SINE Alu -33 279 1 1730 169 3 34 chr3 35939013 35939309 -182097849 + AluJo SINE Alu 9 295 -17 1974 118 42 7 chr3 35939411 35939700 -182097458 - AluSc SINE Alu -10 299 1 353 70 35 8 chr3 35939701 35939769 -182097389 - Alu SINE Alu 0 301 244 557 147 0 0 chr3 35939872 35939967 -182097191 + L1MA5 LINE L1 6064 6158 -142 823 140 13 6 chr3 35940029 35940186 -182096972 + L1MA5 LINE L1 6143 6300 0 1988 151 0 10 chr3 35940189 35940488 -182096670 + AluSx SINE Alu 1 296 -16 467 253 0 35 chr3 35940488 35940662 -182096496 - L1M4 LINE L1 -980 5166 4999 1300 137 10 5 chr3 35940667 35940864 -182096294 - AluSg/x SINE Alu -16 296 99 1375 248 14 6 chr3 35941148 35941499 -182095659 + LTR16A LTR ERVL 92 445 -5 344 306 124 61 chr3 35942481 35942925 -182094233 + L2 LINE L2 2465 2936 -378 261 373 75 63 chr3 35942952 35943220 -182093938 + L2 LINE L2 3002 3272 0 229 331 57 24 chr3 35943656 35943780 -182093378 + MIR SINE MIR 70 197 -65 2084 97 30 20 chr3 35943938 35944113 -182093045 - AluSq SINE Alu -12 301 120 513 0 0 0 chr3 35944113 35944170 -182092988 + (TG)n Simple_repeat Simple_repeat 2 58 0 2084 97 30 20 chr3 35944170 35944292 -182092866 - AluSq SINE Alu -193 120 1 646 176 42 21 chr3 35944433 35944575 -182092583 - MIR SINE MIR -44 218 74 883 225 48 0 chr3 35944588 35944797 -182092361 - MIR SINE MIR 0 262 44 2098 104 57 10 chr3 35945362 35945660 -182091498 - AluSx SINE Alu 0 312 1 776 238 145 9 chr3 35945870 35946097 -182091061 - MIR SINE MIR -3 259 2 189 404 0 0 chr3 35946311 35946405 -182090753 + L2 LINE L2 3218 3311 -2 2214 93 10 3 chr3 35946572 35946874 -182090284 - AluSq SINE Alu -9 304 1 785 273 61 9 chr3 35946895 35947126 -182090032 - MIR SINE MIR -19 243 1 481 288 34 68 chr3 35947376 35947581 -182089577 - L2 LINE L2 0 3272 3075 180 363 12 12 chr3 35947583 35947663 -182089495 - L2 LINE L2 -307 2965 2886 292 305 123 65 chr3 35947704 35947775 -182089383 - L2 LINE L2 -556 2758 2693 2191 84 7 0 chr3 35947775 35948060 -182089098 + AluSx SINE Alu 1 287 -25 292 305 123 65 chr3 35948060 35948083 -182089075 - L2 LINE L2 -621 2693 2673 228 67 0 0 chr3 35948083 35948113 -182089045 + (TA)n Simple_repeat Simple_repeat 2 31 0 292 305 123 65 chr3 35948113 35948600 -182088558 - L2 LINE L2 -641 2673 2142 305 312 128 82 chr3 35948856 35949356 -182087802 + L1M2 LINE L1 910 1432 -5417 355 312 118 29 chr3 35949689 35949859 -182087299 + MIR3 SINE MIR 18 202 -6 185 327 64 36 chr3 35949923 35950033 -182087125 - MIR SINE MIR -116 146 34 1884 149 14 0 chr3 35950456 35950744 -182086414 + AluSx SINE Alu 1 292 -20 288 0 0 0 chr3 35951260 35951292 -182085866 + (CA)n Simple_repeat Simple_repeat 1 32 0 2339 78 7 7 chr3 35951834 35952143 -182085015 + AluY SINE Alu 1 309 -2 24 67 0 0 chr3 35952752 35952797 -182084361 + AT_rich Low_complexity Low_complexity 1 45 0 21 82 0 0 chr3 35953237 35953286 -182083872 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr3 35955474 35955498 -182081660 + AT_rich Low_complexity Low_complexity 1 24 0 33 0 0 0 chr3 35956627 35956660 -182080498 + AT_rich Low_complexity Low_complexity 1 33 0 22 70 0 0 chr3 35956778 35956821 -182080337 + AT_rich Low_complexity Low_complexity 1 43 0 2231 113 0 0 chr3 35957167 35957459 -182079699 - AluSq SINE Alu -21 292 1 743 213 0 38 chr3 35958681 35958841 -182078317 - AluSp SINE Alu -24 289 136 2358 91 0 10 chr3 35959793 35960100 -182077058 + AluSg SINE Alu 1 304 -6 1866 121 78 11 chr3 35961570 35961852 -182075306 + AluSq SINE Alu 1 301 -12 637 160 0 0 chr3 35961899 35961999 -182075159 - AluSg/x SINE Alu -25 287 188 621 249 42 0 chr3 35963645 35963810 -182073348 - MER20 DNA MER1_type 0 219 48 215 0 0 62 chr3 35964193 35964225 -182072933 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 577 234 97 72 chr3 35964347 35964625 -182072533 + MLT1J LTR MaLR 227 511 0 1744 125 90 11 chr3 35964708 35964987 -182072171 + AluSx SINE Alu 1 301 -11 21 82 0 0 chr3 35965093 35965142 -182072016 + AT_rich Low_complexity Low_complexity 1 49 0 578 250 12 55 chr3 35965719 35965883 -182071275 + MIR SINE MIR 91 247 -15 207 276 17 0 chr3 35965910 35965968 -182071190 + CT-rich Low_complexity Low_complexity 4 62 0 514 320 96 45 chr3 35966513 35967162 -182069996 - L1M4 LINE L1 -743 5403 4722 389 212 23 30 chr3 35967296 35967428 -182069730 - L1ME3 LINE L1 -1 6161 6031 431 146 52 10 chr3 35967667 35967763 -182069395 + MLT1C LTR MaLR 1 100 -367 280 281 22 14 chr3 35967758 35967897 -182069261 + MLT1C LTR MaLR 206 345 -122 * 302 95 0 0 chr3 35967929 35967971 -182069187 + MLT1C LTR MaLR 426 467 0 608 307 93 58 chr3 35968239 35968634 -182068524 - L1M4 LINE L1 -2344 3802 3377 1022 222 209 3 chr3 35968634 35968954 -182068204 + MER58D DNA MER1_type 1 386 0 608 307 93 58 chr3 35968954 35969161 -182067997 - L1M4 LINE L1 -2769 3377 3179 260 234 69 21 chr3 35969301 35969446 -182067712 - L1M4 LINE L1 -3261 2885 2734 25 0 0 0 chr3 35969883 35969908 -182067250 + AT_rich Low_complexity Low_complexity 1 25 0 208 357 32 14 chr3 35970549 35970682 -182066476 + MIR SINE MIR 63 196 -66 879 146 0 21 chr3 35970836 35970980 -182066178 - AluJo/FRAM SINE Alu 0 312 172 1634 190 3 0 chr3 35970851 35971135 -182066023 - AluJo SINE Alu -12 300 16 286 301 43 0 chr3 35972114 35972207 -182064951 + MIR SINE MIR 154 250 -12 1916 144 3 3 chr3 35972589 35972874 -182064284 + AluSx SINE Alu 19 303 -9 335 319 59 55 chr3 35972874 35973128 -182064030 + HAL1 LINE L1 1026 1280 -1227 285 224 13 26 chr3 35973407 35973483 -182063675 + HAL1 LINE L1 1602 1676 -831 25 0 0 0 chr3 35973829 35973854 -182063304 + AT_rich Low_complexity Low_complexity 1 25 0 473 167 16 95 chr3 35973924 35974050 -182063108 - Charlie1 DNA MER1_type 0 2761 2646 1916 149 3 3 chr3 35974050 35974345 -182062813 - AluJb SINE Alu -15 297 3 22 0 0 0 chr3 35975147 35975169 -182061989 + AT_rich Low_complexity Low_complexity 1 22 0 839 297 42 67 chr3 35975272 35975685 -182061473 + MLT1H LTR MaLR 3 362 -193 31 26 0 0 chr3 35976656 35976694 -182060464 + AT_rich Low_complexity Low_complexity 1 38 0 2111 82 46 0 chr3 35977063 35977344 -182059814 - AluSq SINE Alu -19 294 1 554 233 23 34 chr3 35978448 35978624 -182058534 - MER104 DNA Tc2 -6 174 1 1536 167 38 3 chr3 35979459 35979752 -182057406 - AluJo SINE Alu -8 304 2 604 200 126 7 chr3 35979838 35979973 -182057185 + MER3 DNA MER1_type 59 209 0 211 243 136 82 chr3 35981574 35981780 -182055378 + MIR SINE MIR 35 251 -11 2127 116 3 0 chr3 35982446 35982740 -182054418 + AluSx SINE Alu 1 295 -17 33 43 0 0 chr3 35983608 35983655 -182053503 + AT_rich Low_complexity Low_complexity 1 47 0 206 267 0 17 chr3 35983828 35983888 -182053270 + (CCA)n Simple_repeat Simple_repeat 3 61 0 1904 112 18 0 chr3 35984118 35984422 -182052736 + AluSx SINE Alu 1 309 0 29 47 0 0 chr3 35985123 35985166 -182051992 + AT_rich Low_complexity Low_complexity 1 43 0 938 133 209 5 chr3 35985239 35985435 -182051723 + MER46A DNA MER2_type 1 236 0 23 33 0 0 chr3 35985580 35985610 -182051548 + AT_rich Low_complexity Low_complexity 1 30 0 293 315 77 5 chr3 35986126 35986279 -182050879 + MIR SINE MIR 7 159 -49 1491 176 36 19 chr3 35986675 35986982 -182050176 + AluJb SINE Alu 1 312 0 2216 98 0 0 chr3 35987228 35987524 -182049634 + AluSc SINE Alu 1 296 -13 553 198 60 0 chr3 35990275 35990391 -182046767 + L2 LINE L2 3187 3309 -4 35 63 0 0 chr3 35991481 35991544 -182045614 + AT_rich Low_complexity Low_complexity 1 63 0 22 0 0 0 chr3 35992742 35992764 -182044394 + AT_rich Low_complexity Low_complexity 1 22 0 295 130 0 0 chr3 35992796 35992842 -182044316 - MADE1 DNA Mariner -34 46 1 226 313 52 24 chr3 35993173 35993384 -182043774 + L1MC4a LINE L1 3348 3564 -2582 645 291 65 34 chr3 35993557 35993973 -182043185 + L1MC4a LINE L1 3796 4224 -1922 2303 100 0 0 chr3 35994028 35994327 -182042831 + AluSq SINE Alu 1 299 -14 957 177 80 26 chr3 35994331 35994557 -182042601 - Tigger2 DNA MER2_type 0 2718 2481 * 12141 147 60 9 chr3 35994540 35996708 -182040450 - Tigger2 DNA MER2_type -439 2279 1 316 266 70 72 chr3 35996754 35997238 -182039920 + L1MC4a LINE L1 4386 4868 -1278 1659 246 99 34 chr3 35997452 35997502 -182039656 + L1MC4a LINE L1 5390 5435 -721 1558 204 0 0 chr3 35997502 35997791 -182039367 + AluJo SINE Alu 1 289 -23 1659 246 99 34 chr3 35997791 35998433 -182038725 + L1MC4a LINE L1 5435 5651 -505 23 0 0 0 chr3 35998460 35998483 -182038675 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 35998900 35998922 -182038236 + AT_rich Low_complexity Low_complexity 1 22 0 514 311 93 44 chr3 35999046 35999316 -182037842 - L2 LINE L2 -4 3309 3027 2023 88 84 7 chr3 35999319 35999604 -182037554 + AluSc SINE Alu 3 309 0 542 123 0 0 chr3 36000424 36000505 -182036653 - AluS SINE Alu -232 81 1 1597 184 22 0 chr3 36000628 36000932 -182036226 + AluSx SINE Alu 1 310 0 21 0 0 0 chr3 36001198 36001219 -182035939 + AT_rich Low_complexity Low_complexity 1 21 0 1684 176 7 14 chr3 36001690 36001979 -182035179 - AluJo SINE Alu -25 287 1 21 0 0 0 chr3 36003755 36003776 -182033382 + AT_rich Low_complexity Low_complexity 1 21 0 221 354 0 42 chr3 36004179 36004275 -182032883 + MIR SINE MIR 21 112 -150 2326 95 3 0 chr3 36004499 36004804 -182032354 + AluSq SINE Alu 1 306 -7 2426 80 3 0 chr3 36004805 36005117 -182032041 + AluSp SINE Alu 1 313 0 21 82 0 0 chr3 36006399 36006448 -182030710 + AT_rich Low_complexity Low_complexity 1 49 0 896 157 74 65 chr3 36006467 36006684 -182030474 + MER20 DNA MER1_type 1 219 0 579 132 149 50 chr3 36006729 36006850 -182030308 - FLAM_C SINE Alu 0 133 1 29 78 0 0 chr3 36006855 36006919 -182030239 + AT_rich Low_complexity Low_complexity 1 64 0 236 319 112 9 chr3 36007706 36007822 -182029336 + MIR SINE MIR 103 230 -32 181 298 209 13 chr3 36007993 36008151 -182029007 + MIR SINE MIR 10 198 -64 25 65 0 0 chr3 36008262 36008308 -182028850 + AT_rich Low_complexity Low_complexity 1 46 0 2286 78 0 7 chr3 36008396 36008690 -182028468 + AluSc SINE Alu 1 292 -17 2017 114 7 4 chr3 36008978 36009259 -182027899 + AluSx SINE Alu 1 282 -30 1590 147 23 80 chr3 36009344 36009643 -182027515 + AluJo SINE Alu 1 282 -30 180 0 0 0 chr3 36009712 36009732 -182027426 + (CA)n Simple_repeat Simple_repeat 1 20 0 1449 154 62 0 chr3 36009763 36010035 -182027123 + AluJb SINE Alu 13 301 -11 1257 142 0 14 chr3 36010041 36010253 -182026905 + AluSg/x SINE Alu 83 291 -19 379 54 0 279 chr3 36010442 36010553 -182026605 + MADE1 DNA Mariner 1 80 0 22 35 0 0 chr3 36013702 36013731 -182023427 + AT_rich Low_complexity Low_complexity 1 29 0 380 241 186 68 chr3 36013909 36014129 -182023029 - L2 LINE L2 -3 3310 3065 31 26 0 0 chr3 36014151 36014189 -182022969 + AT_rich Low_complexity Low_complexity 1 38 0 1494 176 3 49 chr3 36014968 36015274 -182021884 + AluJo SINE Alu 1 292 -20 2198 98 0 0 chr3 36016479 36016774 -182020384 + AluSq SINE Alu 1 295 -18 2037 108 18 0 chr3 36017326 36017604 -182019554 + AluSx SINE Alu 1 283 -29 800 97 28 23 chr3 36017615 36017635 -182019523 + A-rich Low_complexity Low_complexity 4 22 -158 2244 101 0 0 chr3 36017635 36017932 -182019226 + AluSg SINE Alu 1 297 -13 800 97 28 23 chr3 36017932 36018087 -182019071 + A-rich Low_complexity Low_complexity 22 180 0 276 91 0 0 chr3 36018087 36018131 -182019027 + (CATAA)n Simple_repeat Simple_repeat 2 45 0 245 277 54 45 chr3 36018342 36018454 -182018704 + L1MEd LINE L1 502 614 -5505 373 312 151 9 chr3 36018595 36018813 -182018345 + L1MEd LINE L1 1008 1256 -4863 1895 236 70 34 chr3 36018856 36019483 -182017675 - L1M4 LINE L1 -1686 4460 3811 1548 189 78 22 chr3 36019494 36019854 -182017304 - MLT1D LTR MaLR -19 486 107 2061 147 0 6 chr3 36019856 36020170 -182016988 + AluSx SINE Alu 1 312 0 2267 110 0 16 chr3 36020172 36020489 -182016669 + AluSx SINE Alu 1 312 0 29 0 0 0 chr3 36020709 36020738 -182016420 + AT_rich Low_complexity Low_complexity 1 29 0 1099 76 0 0 chr3 36021310 36021441 -182015717 - AluSg SINE Alu -179 131 1 60 73 0 0 chr3 36021555 36021678 -182015480 + AT_rich Low_complexity Low_complexity 1 123 0 1890 114 51 0 chr3 36021926 36022199 -182014959 - AluSx SINE Alu -25 287 1 215 275 43 29 chr3 36022238 36022307 -182014851 + L2 LINE L2 3201 3270 -2 369 0 0 0 chr3 36023034 36023075 -182014083 + (CA)n Simple_repeat Simple_repeat 1 41 0 868 215 0 0 chr3 36023639 36023802 -182013356 - FRAM SINE Alu -13 163 1 2381 106 0 3 chr3 36024709 36025020 -182012138 + AluSx SINE Alu 1 310 -2 23 0 0 0 chr3 36025332 36025355 -182011803 + AT_rich Low_complexity Low_complexity 1 23 0 2256 110 7 3 chr3 36025358 36025666 -182011492 + AluSx SINE Alu 1 309 -3 889 103 0 0 chr3 36026336 36026453 -182010705 + AluSp SINE Alu 1 117 -196 1301 172 57 4 chr3 36026453 36026680 -182010478 - AluSx SINE Alu -73 239 1 3070 268 94 47 chr3 36026713 36027220 -182009938 + HAL1 LINE L1 781 1263 -1244 2081 132 3 0 chr3 36027220 36027507 -182009651 + AluSx SINE Alu 1 288 -24 3070 268 94 47 chr3 36027507 36028266 -182008892 + HAL1 LINE L1 1263 1985 -522 1930 163 0 0 chr3 36028266 36028567 -182008591 + AluJb SINE Alu 1 301 -11 1654 183 0 31 chr3 36028571 36028893 -182008265 + AluSq SINE Alu 1 312 -1 3070 268 94 47 chr3 36028893 36029270 -182007888 + HAL1 LINE L1 1987 2507 0 1437 182 3 85 chr3 36029505 36029845 -182007313 + AluJo SINE Alu 1 312 0 435 233 180 13 chr3 36029876 36030026 -182007132 + MER5B DNA MER1_type 2 176 -2 3668 203 21 76 chr3 36030221 36031246 -182005912 + LTR5 LTR ERVK 1 969 0 25 0 0 0 chr3 36032002 36032027 -182005131 + AT_rich Low_complexity Low_complexity 1 25 0 2409 92 3 0 chr3 36033645 36033950 -182003208 + AluSg SINE Alu 1 306 -4 378 0 0 0 chr3 36034211 36034253 -182002905 + (CA)n Simple_repeat Simple_repeat 1 42 0 1744 189 0 0 chr3 36035020 36035311 -182001847 + AluJo SINE Alu 13 303 -9 2340 69 3 13 chr3 36035857 36036162 -182000996 - AluSq SINE Alu -11 302 1 195 42 0 0 chr3 36036163 36036187 -182000971 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2218 108 7 0 chr3 36036417 36036724 -182000434 - AluSx SINE Alu -3 309 1 325 272 73 37 chr3 36036830 36036966 -182000192 + L2 LINE L2 3172 3312 -1 230 219 67 84 chr3 36037223 36037342 -181999816 + MLT1J LTR MaLR 11 127 -384 329 258 0 21 chr3 36037814 36037911 -181999247 + HERVL32 LTR ERVL 3323 3417 -1 2482 80 3 3 chr3 36037911 36038223 -181998935 + AluSp SINE Alu 1 312 -1 497 228 60 42 chr3 36038280 36038495 -181998663 + LTR32 LTR ERVL 87 305 -166 445 203 39 39 chr3 36038829 36038957 -181998201 + MIR SINE MIR 91 218 -44 2163 130 0 3 chr3 36039099 36039406 -181997752 + AluSq SINE Alu 1 306 -7 536 179 38 0 chr3 36039406 36039512 -181997646 - MLT1D LTR MaLR -394 111 2 894 264 108 12 chr3 36039515 36039822 -181997336 - L1MEc LINE L1 -2353 3862 3503 1325 233 36 3 chr3 36039822 36040123 -181997035 - AluJo SINE Alu -1 311 1 894 264 108 12 chr3 36040123 36040231 -181996927 - L1MEc LINE L1 -2712 3503 3407 1894 92 70 35 chr3 36040238 36040522 -181996636 - AluSx SINE Alu -17 295 2 21 0 0 0 chr3 36040592 36040613 -181996545 + AT_rich Low_complexity Low_complexity 1 21 0 1338 143 123 4 chr3 36040774 36041018 -181996140 - AluSx SINE Alu -9 303 31 1135 206 38 15 chr3 36041028 36041316 -181995842 - MER61B LTR ERV1 -29 396 1 2312 100 7 0 chr3 36041357 36041667 -181995491 - AluSx SINE Alu 0 312 1 1502 202 104 116 chr3 36041667 36042602 -181994556 - L1MEc LINE L1 -2800 3415 2492 2770 278 65 16 chr3 36042635 36043886 -181993272 - L1MEc LINE L1 -5004 1392 80 381 136 25 37 chr3 36043890 36043971 -181993187 + L1MA9 LINE L1 6025 6104 -208 2371 86 0 43 chr3 36043973 36044299 -181992859 + AluSx SINE Alu 1 312 0 22 0 0 0 chr3 36044308 36044330 -181992828 + AT_rich Low_complexity Low_complexity 1 22 0 256 274 5 79 chr3 36044335 36044550 -181992608 + L1MA9 LINE L1 6112 6310 -2 1080 148 13 93 chr3 36044741 36044826 -181992332 + L1MA9 LINE L1 6027 6117 -195 1544 199 0 43 chr3 36044826 36045148 -181992010 + AluSx SINE Alu 5 312 0 261 0 0 0 chr3 36045150 36045179 -181991979 + (TA)n Simple_repeat Simple_repeat 1 29 0 1080 148 13 93 chr3 36045179 36045400 -181991758 + L1MA9 LINE L1 6118 6311 -1 2181 115 3 16 chr3 36046058 36046372 -181990786 - AluSg SINE Alu 0 310 1 221 203 0 0 chr3 36046398 36046455 -181990703 + MIR SINE MIR 104 144 -64 207 0 0 0 chr3 36046827 36046850 -181990308 + (T)n Simple_repeat Simple_repeat 1 23 0 2319 110 0 16 chr3 36047116 36047433 -181989725 + AluSx SINE Alu 1 312 0 29 0 0 0 chr3 36047653 36047682 -181989476 + AT_rich Low_complexity Low_complexity 1 29 0 1099 76 0 0 chr3 36048255 36048386 -181988772 - AluSg SINE Alu -179 131 1 60 73 0 0 chr3 36048500 36048623 -181988535 + AT_rich Low_complexity Low_complexity 1 123 0 868 240 5 10 chr3 36049108 36049312 -181987846 - MER82 DNA MER2_type 0 653 451 218 315 0 0 chr3 36049401 36049455 -181987703 + L2 LINE L2 3214 3267 -5 351 223 62 15 chr3 36049608 36049738 -181987420 + L1MB5 LINE L1 6030 6165 -9 2340 161 9 78 chr3 36050639 36051218 -181985940 + L1MD3 LINE L1 7443 7981 -14 2129 98 7 0 chr3 36052621 36052906 -181984252 + AluSp SINE Alu 1 287 -26 724 172 9 9 chr3 36053317 36053433 -181983725 + FLAM_C SINE Alu 1 116 -17 29 0 0 0 chr3 36053434 36053463 -181983695 + AT_rich Low_complexity Low_complexity 1 29 0 2200 115 0 0 chr3 36053472 36053768 -181983390 + AluSx SINE Alu 1 296 -16 22 56 0 0 chr3 36054194 36054230 -181982928 + AT_rich Low_complexity Low_complexity 1 36 0 443 66 0 0 chr3 36054859 36054920 -181982238 - Alu SINE Alu -9 303 243 1578 145 85 0 chr3 36054920 36055168 -181981990 + AluSx SINE Alu 37 305 -7 4009 188 90 19 chr3 36056415 36057497 -181979661 - Charlie1 DNA MER1_type -19 2742 1585 25 31 0 0 chr3 36057561 36057593 -181979565 + AT_rich Low_complexity Low_complexity 1 32 0 1883 131 6 32 chr3 36057997 36058310 -181978848 + AluSx SINE Alu 1 305 -7 303 214 0 0 chr3 36059256 36059326 -181977832 + (TA)n Simple_repeat Simple_repeat 1 70 0 1909 145 10 7 chr3 36059327 36059624 -181977534 - AluSx SINE Alu -14 298 1 252 0 0 0 chr3 36060497 36060525 -181976633 + (CA)n Simple_repeat Simple_repeat 1 28 0 1010 136 0 13 chr3 36060537 36060720 -181976438 + AluSg/x SINE Alu 134 312 0 558 207 0 0 chr3 36060803 36060919 -181976239 + FLAM_C SINE Alu 26 141 -2 1718 172 7 10 chr3 36060966 36061257 -181975901 + AluSx SINE Alu 1 290 -22 318 294 75 38 chr3 36061442 36061602 -181975556 + L1ME LINE L1 5497 5662 -459 982 81 25 69 chr3 36062296 36062435 -181974723 + AluSq SINE Alu 1 134 -179 2303 74 3 19 chr3 36062435 36062746 -181974412 + AluY SINE Alu 1 306 -5 982 81 25 69 chr3 36062746 36062766 -181974392 + AluSq SINE Alu 134 153 -160 579 74 0 0 chr3 36062766 36062847 -181974311 + AluSp/q SINE Alu 220 300 -13 853 152 59 150 chr3 36062884 36063212 -181973946 + MER61B LTR ERV1 1 396 -29 1584 121 73 4 chr3 36063222 36063470 -181973688 + AluSx SINE Alu 31 295 -17 1919 98 47 0 chr3 36063715 36063992 -181973166 + AluSg SINE Alu 1 290 -20 1251 172 46 23 chr3 36064037 36064326 -181972832 + MER61B LTR ERV1 1 396 -28 1752 110 38 8 chr3 36064335 36064599 -181972559 + AluSx SINE Alu 31 302 -10 180 0 0 0 chr3 36064764 36064784 -181972374 + (A)n Simple_repeat Simple_repeat 1 20 0 2289 82 20 0 chr3 36064968 36065272 -181971886 + AluY SINE Alu 1 310 -1 2474 50 7 3 chr3 36065459 36065762 -181971396 + AluY SINE Alu 1 304 -7 1822 123 0 89 chr3 36065835 36066159 -181970999 + AluSx SINE Alu 1 295 -17 279 273 62 45 chr3 36066304 36066480 -181970678 - MIR SINE MIR -76 186 8 1529 101 0 24 chr3 36067300 36067508 -181969650 - AluSx SINE Alu -99 213 11 628 225 36 0 chr3 36067718 36067856 -181969302 + FAM SINE Alu 1 143 -42 559 289 62 54 chr3 36067872 36068114 -181969044 + MIR SINE MIR 11 254 -8 2020 142 3 0 chr3 36068119 36068415 -181968743 + AluSx SINE Alu 5 301 -11 1637 153 97 43 chr3 36068443 36068836 -181968322 - MER21B LTR ERV1 -1 862 449 1761 89 13 0 chr3 36068836 36069060 -181968098 + AluSp SINE Alu 74 300 -13 234 208 0 0 chr3 36069879 36069927 -181967231 - MER41A LTR ERV1 -111 443 396 2069 103 0 4 chr3 36069951 36070232 -181966926 + AluSc SINE Alu 1 280 -29 240 35 0 0 chr3 36070235 36070264 -181966894 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 408 247 93 6 chr3 36070382 36070544 -181966614 + MER112 DNA MER1_type 74 249 -11 1666 112 127 12 chr3 36070703 36070962 -181966196 - AluSx SINE Alu -23 289 1 678 148 28 0 chr3 36071606 36071714 -181965444 + AluSq/x SINE Alu 8 118 -194 403 113 0 0 chr3 36071716 36071769 -181965389 + AluS SINE Alu 232 284 -26 31 26 0 0 chr3 36071776 36071814 -181965344 + AT_rich Low_complexity Low_complexity 1 38 0 2253 112 0 0 chr3 36072088 36072384 -181964774 + AluSx SINE Alu 1 296 -16 900 208 0 29 chr3 36072438 36072611 -181964547 + FAM SINE Alu 1 168 -7 1827 136 47 4 chr3 36072739 36073018 -181964140 + AluJb SINE Alu 14 304 -8 1698 109 55 4 chr3 36073743 36073981 -181963177 + AluSg SINE Alu 25 274 -36 1931 108 68 7 chr3 36074129 36074408 -181962750 + AluSx SINE Alu 1 296 -16 258 324 92 23 chr3 36074580 36074753 -181962405 - MIR SINE MIR -38 224 40 1611 135 214 11 chr3 36075803 36076159 -181960999 + MSTA LTR MaLR 1 428 0 180 320 90 30 chr3 36076169 36076269 -181960889 - L2 LINE L2 0 3313 3208 2073 87 17 37 chr3 36076906 36077204 -181959954 - AluSx SINE Alu -20 292 1 2344 75 20 0 chr3 36077525 36077820 -181959338 + AluSx SINE Alu 1 301 -11 1684 132 6 71 chr3 36077995 36078321 -181958837 + AluSx SINE Alu 1 305 -7 1778 162 7 16 chr3 36078426 36078729 -181958429 + AluJb SINE Alu 1 300 -12 1764 164 18 4 chr3 36079541 36079821 -181957337 - AluJb SINE Alu -28 284 1 257 283 152 0 chr3 36080187 36080286 -181956872 + L2 LINE L2 3158 3271 -1 2131 116 10 0 chr3 36081150 36081442 -181955716 + AluSx SINE Alu 5 299 -13 2281 84 0 3 chr3 36081781 36082068 -181955090 + AluSx SINE Alu 1 286 -26 27 0 0 0 chr3 36083114 36083141 -181954017 + GC_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr3 36083492 36083520 -181953638 + GC_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 36083847 36083869 -181953289 + GC_rich Low_complexity Low_complexity 1 22 0 2390 92 7 0 chr3 36084320 36084625 -181952533 - AluSx SINE Alu -5 307 1 244 298 145 0 chr3 36084656 36084787 -181952371 + MIR SINE MIR 113 262 0 2127 119 0 3 chr3 36084827 36085137 -181952021 + AluSx SINE Alu 1 309 -3 233 201 37 0 chr3 36086007 36086071 -181951087 - MIR SINE MIR -62 146 107 2340 105 0 3 chr3 36086119 36086425 -181950733 - AluSx SINE Alu -7 305 1 222 246 60 93 chr3 36086425 36086467 -181950691 + L2 LINE L2 3143 3185 -128 240 35 0 0 chr3 36086467 36086496 -181950662 + (CA)n Simple_repeat Simple_repeat 2 30 0 222 246 60 93 chr3 36086496 36086630 -181950528 + L2 LINE L2 3185 3313 0 440 148 0 0 chr3 36087132 36087193 -181949965 + AluS SINE Alu 2 62 -256 1184 94 29 12 chr3 36087426 36087713 -181949445 - MER4B LTR ERV1 0 610 261 662 121 0 10 chr3 36087713 36087812 -181949346 - MER4A LTR ERV1 -566 98 1 2313 62 0 10 chr3 36087884 36088198 -181948960 + AluY SINE Alu 1 311 0 1618 161 36 7 chr3 36088558 36088838 -181948320 - AluJb SINE Alu -24 288 1 1017 156 24 0 chr3 36088838 36089005 -181948153 - AluSg/x SINE Alu -11 299 129 1076 146 12 0 chr3 36089005 36089176 -181947982 - AluSc SINE Alu 0 309 137 2065 121 7 3 chr3 36089182 36089472 -181947686 - AluSx SINE Alu -21 291 1 458 172 26 35 chr3 36089476 36089592 -181947566 + L1ME1 LINE L1 6048 6162 -4 2083 107 52 50 chr3 36089744 36090107 -181947051 - THE1B LTR MaLR 0 364 1 1781 148 16 19 chr3 36090253 36090563 -181946595 + AluSx SINE Alu 3 311 -1 232 290 14 0 chr3 36091346 36091415 -181945743 + MIR SINE MIR 81 150 -112 665 241 99 59 chr3 36091416 36091607 -181945551 + MER46C DNA MER2_type 1 212 -126 2165 109 3 0 chr3 36091607 36091891 -181945267 + AluSg1 SINE Alu 1 285 -24 665 241 99 59 chr3 36091891 36092023 -181945135 + MER46C DNA MER2_type 212 337 -1 468 0 0 0 chr3 36092531 36092583 -181944575 + (CA)n Simple_repeat Simple_repeat 1 52 0 1965 113 7 41 chr3 36093023 36093354 -181943804 - AluSp SINE Alu 0 321 1 376 250 0 25 chr3 36093416 36093496 -181943662 + MER21B LTR ERV1 12 89 -774 2297 216 117 74 chr3 36093519 36093690 -181943468 + MER21B LTR ERV1 19 181 -682 2266 104 0 22 chr3 36093690 36094007 -181943151 - AluSx SINE Alu 0 312 3 2297 216 117 74 chr3 36094007 36094642 -181942516 + MER21B LTR ERV1 181 859 -4 2241 116 0 7 chr3 36095188 36095489 -181941669 + AluSq SINE Alu 1 299 -14 1169 213 18 5 chr3 36095935 36096156 -181941002 + MER58A DNA MER1_type 1 224 0 1161 199 5 0 chr3 36096193 36096384 -181940774 + AluSx SINE Alu 1 192 -120 858 149 0 14 chr3 36097370 36097511 -181939647 + AluSc SINE Alu 152 290 -19 2312 95 3 13 chr3 36097800 36098104 -181939054 - AluSp SINE Alu -12 301 1 188 308 140 0 chr3 36098499 36098606 -181938552 + MIR SINE MIR 141 262 0 262 195 212 18 chr3 36098693 36098806 -181938352 + L2 LINE L2 3179 3313 0 1547 98 0 0 chr3 36098898 36099101 -181938057 - AluSg/x SINE Alu -9 300 98 1199 168 9 19 chr3 36099205 36099419 -181937739 - AluJo SINE Alu -100 212 1 348 247 12 0 chr3 36099439 36099520 -181937638 - MIR SINE MIR -22 240 159 2234 108 3 13 chr3 36099801 36100116 -181937042 + AluSq SINE Alu 1 312 -1 228 242 11 66 chr3 36100156 36100247 -181936911 - MARNA DNA Mariner -42 544 459 2114 129 3 7 chr3 36100261 36100563 -181936595 + AluSg SINE Alu 1 301 -9 21 0 0 0 chr3 36100579 36100600 -181936558 + AT_rich Low_complexity Low_complexity 1 21 0 2065 133 0 23 chr3 36100631 36100801 -181936357 - AluSx SINE Alu -10 302 141 1934 110 88 0 chr3 36100801 36101074 -181936084 - AluSg SINE Alu -11 299 3 2065 133 0 23 chr3 36101074 36101212 -181935946 - AluSx SINE Alu -171 141 1 297 318 11 0 chr3 36101284 36101372 -181935786 + MARNA DNA Mariner 261 349 -237 195 274 48 16 chr3 36101412 36101474 -181935684 + L2 LINE L2 3250 3313 0 342 224 129 0 chr3 36101483 36101568 -181935590 + MARNA DNA Mariner 418 513 -73 869 200 205 0 chr3 36101617 36101802 -181935356 - MER45C DNA AcHobo 0 953 731 821 221 22 22 chr3 36101911 36102092 -181935066 - MER45C DNA AcHobo -724 229 49 242 282 45 9 chr3 36102481 36102591 -181934567 - L2 LINE L2 -534 2780 2667 760 137 5 8 chr3 36102780 36102996 -181934162 + AluSx SINE Alu 2 302 -10 1973 121 7 3 chr3 36103238 36103542 -181933616 + AluSx SINE Alu 1 305 0 2243 121 3 0 chr3 36103634 36103941 -181933217 + AluSx SINE Alu 1 308 -4 180 226 57 0 chr3 36104218 36104271 -181932887 + MER5A DNA MER1_type 26 81 -108 651 234 91 29 chr3 36105516 36105932 -181931226 + LTR16C LTR ERVL 1 483 -8 1066 268 91 56 chr3 36106536 36106669 -181930489 + LTR16A LTR ERVL 26 153 -297 2229 103 3 3 chr3 36106669 36106960 -181930198 + AluSx SINE Alu 1 291 -21 1066 268 91 56 chr3 36106960 36107222 -181929936 + LTR16A LTR ERVL 153 435 -15 767 153 0 0 chr3 36107266 36107377 -181929781 + AluJo/FLAM SINE Alu 4 114 -188 2195 117 0 0 chr3 36107377 36107698 -181929460 - AluSx SINE Alu 0 321 1 1739 181 48 12 chr3 36107700 36108031 -181929127 + MLT1A1 LTR MaLR 23 365 0 513 297 116 52 chr3 36108032 36108419 -181928739 - MLT1J2 LTR MaLR -10 440 29 2413 87 0 3 chr3 36109820 36110119 -181927039 + AluSq SINE Alu 1 298 -15 561 222 8 0 chr3 36110301 36110418 -181926740 - L1MB7 LINE L1 -19 6165 6048 1120 158 0 0 chr3 36110418 36110582 -181926576 + U1 snRNA snRNA 1 164 -1 999 194 1 41 chr3 36110610 36110739 -181926419 - L1MB7 LINE L1 -123 6055 5940 2221 102 0 0 chr3 36110739 36111050 -181926108 - AluSq SINE Alu 0 311 1 999 194 1 41 chr3 36111050 36111167 -181925991 - L1MB7 LINE L1 -238 5940 5820 693 86 0 0 chr3 36111167 36111260 -181925898 - AluSg/x SINE Alu -9 300 208 950 201 80 17 chr3 36111268 36111537 -181925621 + L1M4 LINE L1 4174 4464 -1682 1664 170 47 4 chr3 36111537 36111813 -181925345 + AluJo SINE Alu 3 290 -22 950 201 80 17 chr3 36111813 36111831 -181925327 + L1M4 LINE L1 4464 4479 -1667 664 184 9 0 chr3 36111831 36111940 -181925218 + AluJo SINE Alu 26 135 -177 2369 113 0 0 chr3 36111941 36112252 -181924906 + AluSx SINE Alu 1 311 -1 713 170 0 0 chr3 36112543 36112655 -181924503 - AluSq/x SINE Alu -200 113 2 1969 144 6 6 chr3 36112750 36112882 -181924276 + AluSx SINE Alu 1 132 -180 2042 113 0 0 chr3 36112882 36113147 -181924011 + AluSx SINE Alu 27 291 -21 1969 144 6 6 chr3 36113147 36113326 -181923832 + AluSx SINE Alu 131 312 0 1033 156 24 0 chr3 36113326 36113493 -181923665 + AluSg/x SINE Alu 131 301 -11 1633 154 33 7 chr3 36113502 36113775 -181923383 + AluJb SINE Alu 9 288 -24 408 55 0 0 chr3 36114136 36114217 -181922941 - Alu SINE Alu 0 309 229 369 302 0 0 chr3 36164217 36164313 -181872845 - L2 LINE L2 -368 2946 2851 1960 89 0 0 chr3 36164320 36164556 -181872602 + AluSx SINE Alu 7 242 -70 221 0 0 33 chr3 36164570 36164600 -181872558 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr3 36164637 36164660 -181872498 + AT_rich Low_complexity Low_complexity 1 23 0 322 296 112 35 chr3 36164785 36164954 -181872204 + MIR SINE MIR 81 262 0 207 241 19 0 chr3 36164962 36165016 -181872142 + (TTA)n Simple_repeat Simple_repeat 2 56 0 342 0 0 0 chr3 36165113 36165151 -181872007 + (TG)n Simple_repeat Simple_repeat 1 38 0 1883 122 30 0 chr3 36165151 36165422 -181871736 - AluSx SINE Alu -33 279 1 545 145 0 0 chr3 36165546 36165629 -181871529 + AluJ/FLAM SINE Alu 9 91 -221 1633 177 0 40 chr3 36165730 36166007 -181871151 - AluJo SINE Alu -46 266 1 1303 210 41 34 chr3 36166037 36166300 -181870858 + L1M4 LINE L1 2911 3180 -2966 2034 121 48 38 chr3 36166300 36166671 -181870487 + THE1C LTR MaLR 1 375 0 1303 210 41 34 chr3 36166671 36166849 -181870309 + L1M4 LINE L1 3180 3355 -2791 944 150 20 0 chr3 36166955 36167102 -181870056 + AluSg/x SINE Alu 133 282 -30 180 204 82 0 chr3 36167740 36167789 -181869369 + L2 LINE L2 3219 3271 -1 2104 225 54 33 chr3 36167805 36168320 -181868838 - MLT1E LTR MaLR -11 582 57 306 254 51 43 chr3 36168533 36168671 -181868487 - L2 LINE L2 -200 3072 2934 245 339 46 23 chr3 36168739 36168913 -181868245 + MIR3 SINE MIR 30 207 -1 2112 145 0 0 chr3 36169665 36169975 -181867183 - AluSx SINE Alu -2 310 1 330 87 0 0 chr3 36170526 36170572 -181866586 + (TG)n Simple_repeat Simple_repeat 2 47 0 2059 122 14 0 chr3 36170888 36171196 -181865962 - AluSx SINE Alu 0 312 1 1932 112 76 0 chr3 36171363 36171640 -181865518 - AluSp SINE Alu -15 298 1 2036 165 8 61 chr3 36171675 36172070 -181865088 + MLT1B LTR MaLR 17 390 0 496 170 11 11 chr3 36172116 36172210 -181864948 + MER74A LTR ERVL 30 123 -435 44 35 0 0 chr3 36172383 36172441 -181864717 + AT_rich Low_complexity Low_complexity 1 58 0 2266 128 0 3 chr3 36172561 36172874 -181864284 - AluSx SINE Alu 0 312 1 653 130 20 0 chr3 36173735 36173835 -181863323 + MSTD LTR MaLR 1 102 -294 271 0 0 0 chr3 36173841 36173871 -181863287 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1467 193 0 63 chr3 36173871 36174172 -181862986 - AluJo SINE Alu -1 311 1 39 60 0 0 chr3 36174173 36174240 -181862918 + AT_rich Low_complexity Low_complexity 1 67 0 848 158 0 0 chr3 36174242 36174369 -181862789 - FLAM_C SINE Alu -16 127 1 731 232 105 11 chr3 36174369 36174559 -181862599 + MSTD LTR MaLR 122 329 -67 1842 99 4 16 chr3 36174563 36174806 -181862352 - AluSx SINE Alu -17 295 56 1325 69 6 0 chr3 36175269 36175442 -181861716 + L1PA11 LINE L1 5998 6171 -3 2084 124 13 22 chr3 36176023 36176338 -181860820 + AluSq SINE Alu 1 312 -1 384 349 59 21 chr3 36176501 36176739 -181860419 - MIR SINE MIR -3 259 13 516 172 123 49 chr3 36176892 36177006 -181860152 + MER44D DNA MER2_type 5 109 -2382 2305 100 7 0 chr3 36177006 36177306 -181859852 - AluSp SINE Alu -11 302 1 350 89 0 0 chr3 36177315 36177360 -181859798 - AluSg/x SINE Alu -49 253 209 1988 148 3 0 chr3 36177634 36177925 -181859233 - AluSx SINE Alu -17 295 4 1470 263 121 28 chr3 36179316 36179853 -181857305 + MLT1K LTR MaLR 2 588 0 307 211 0 0 chr3 36180106 36180158 -181857000 + MER44D DNA MER2_type 554 605 0 1749 163 0 30 chr3 36180310 36180611 -181856547 + AluJb SINE Alu 1 292 -20 1351 154 133 39 chr3 36180901 36181186 -181855972 - AluJo SINE Alu 0 312 1 626 122 0 0 chr3 36182194 36182284 -181854874 - AluSp/q SINE Alu -57 256 167 490 228 26 47 chr3 36182395 36182588 -181854570 + L1MC5 LINE L1 7756 7944 -17 2375 36 39 42 chr3 36182679 36182987 -181854171 - AluY SINE Alu -4 307 1 765 210 58 76 chr3 36184173 36184295 -181852863 + ORSL DNA AcHobo 1 124 -151 2279 97 0 0 chr3 36184295 36184593 -181852565 + AluY SINE Alu 1 298 -13 186 43 0 0 chr3 36184593 36184616 -181852542 + (TA)n Simple_repeat Simple_repeat 1 23 0 765 210 58 76 chr3 36184616 36184768 -181852390 + ORSL DNA AcHobo 122 271 -4 904 128 0 0 chr3 36184886 36185011 -181852147 - AluJb SINE Alu -181 131 7 1569 105 5 5 chr3 36185195 36185404 -181851754 + AluSx SINE Alu 1 209 -103 650 208 90 14 chr3 36185404 36185548 -181851610 + AluJo/FRAM SINE Alu 148 302 -10 2955 236 53 30 chr3 36185687 36186529 -181850629 + L1ME2 LINE L1 5293 6154 -10 2570 216 104 64 chr3 36186544 36187569 -181849589 + L1MC5 LINE L1 6607 7678 -283 266 246 74 66 chr3 36187720 36187842 -181849316 - MLT1L LTR MaLR -348 267 145 435 242 128 40 chr3 36188062 36188211 -181848947 - MIR SINE MIR -54 208 47 180 286 0 48 chr3 36188310 36188373 -181848785 - L2 LINE L2 -4 3268 3209 247 300 0 0 chr3 36188749 36188819 -181848339 - MER117 DNA MER1_type -50 147 78 1676 151 88 18 chr3 36188879 36189061 -181848097 + AluJb SINE Alu 1 169 -143 2633 187 57 88 chr3 36189061 36189240 -181847918 - LTR8A LTR ERV1 0 727 544 1790 105 93 0 chr3 36189240 36189536 -181847622 - AluSg SINE Alu 0 320 1 2633 187 57 88 chr3 36189536 36189565 -181847593 - LTR8A LTR ERV1 -183 544 516 2236 110 3 0 chr3 36189565 36189857 -181847301 - AluSq SINE Alu -20 293 1 2633 187 57 88 chr3 36189857 36190396 -181846762 - LTR8A LTR ERV1 -211 516 1 1676 151 88 18 chr3 36190396 36190498 -181846660 + AluJb SINE Alu 169 305 -7 526 336 40 5 chr3 36190579 36190802 -181846356 - MIR SINE MIR -31 231 1 751 122 9 0 chr3 36191204 36191311 -181845847 - AluSg/x SINE Alu -11 298 191 319 86 17 86 chr3 36191461 36191503 -181845655 + AluJo SINE Alu 96 135 -167 2328 102 3 0 chr3 36191503 36191797 -181845361 + AluSq SINE Alu 3 297 -16 319 86 17 86 chr3 36191797 36191812 -181845346 + AluJo SINE Alu 135 149 -153 379 119 0 0 chr3 36191815 36191882 -181845276 - L1MEc LINE L1 -4282 2114 2048 1242 123 33 19 chr3 36191883 36192199 -181844959 + MLT2A2 LTR ERVL 234 453 0 684 186 40 34 chr3 36192199 36192459 -181844699 - L1MEc LINE L1 -4158 2238 1893 4870 253 57 37 chr3 36192526 36192940 -181844218 - L1MEc LINE L1 -4494 1902 1498 454 139 13 0 chr3 36192940 36193019 -181844139 - MADE1 DNA Mariner 0 80 1 4870 253 57 37 chr3 36193019 36194008 -181843150 - L1MEc LINE L1 -4898 1498 530 1069 184 58 0 chr3 36194008 36194215 -181842943 + MER20 DNA MER1_type 1 219 0 4870 253 57 37 chr3 36194215 36194556 -181842602 - L1MEc LINE L1 -5866 530 197 401 75 0 15 chr3 36194556 36194623 -181842535 + (TA)n Simple_repeat Simple_repeat 2 67 0 4870 253 57 37 chr3 36194623 36194715 -181842443 - L1MEc LINE L1 -6199 197 108 2144 122 0 20 chr3 36194715 36195019 -181842139 - AluSx SINE Alu -14 298 1 4870 253 57 37 chr3 36195019 36195039 -181842119 - L1MEc LINE L1 -6288 108 7 291 207 0 37 chr3 36195130 36195212 -181841946 + Charlie8 DNA MER1_type 71 149 -2268 621 249 121 77 chr3 36195301 36195574 -181841584 + LTR33 LTR ERVL 1 285 -236 1499 182 70 40 chr3 36196449 36196751 -181840407 + AluJo SINE Alu 1 311 -1 192 77 0 0 chr3 36196754 36196780 -181840378 + (GAA)n Simple_repeat Simple_repeat 2 27 0 1287 102 6 6 chr3 36196883 36197059 -181840099 - AluSg SINE Alu -134 176 1 2298 96 0 23 chr3 36197084 36197385 -181839773 - AluSg SINE Alu -16 294 1 1402 141 8 25 chr3 36197443 36197685 -181839473 - MER39B LTR ERV1 -3 650 413 1965 116 3 21 chr3 36197686 36197971 -181839187 + AluSx SINE Alu 1 280 -32 218 200 40 0 chr3 36197990 36198040 -181839118 + A-rich Low_complexity Low_complexity 5 56 0 2179 76 152 33 chr3 36198406 36198443 -181838715 + MER39B LTR ERV1 12 43 -610 222 37 0 0 chr3 36198443 36198470 -181838688 + (TC)n Simple_repeat Simple_repeat 1 27 0 2179 76 152 33 chr3 36198470 36198800 -181838358 + MER39B LTR ERV1 43 423 -230 1080 99 7 0 chr3 36198800 36198942 -181838216 - AluSp/q SINE Alu -15 298 156 265 162 14 14 chr3 36200797 36200871 -181836287 + CT-rich Low_complexity Low_complexity 3 76 0 2276 105 3 7 chr3 36200947 36201242 -181835916 + AluSx SINE Alu 1 294 -18 1355 215 33 10 chr3 36201360 36201662 -181835496 + AluJo SINE Alu 3 311 -1 2310 98 0 19 chr3 36201662 36201977 -181835181 + AluY SINE Alu 1 309 -2 2200 84 40 10 chr3 36202057 36202354 -181834804 + AluY SINE Alu 1 306 -5 1074 168 31 75 chr3 36203437 36203569 -181833589 + MER20 DNA MER1_type 1 120 -99 1520 232 118 47 chr3 36203569 36203992 -181833166 - LTR27 LTR ERV1 -1 635 157 2008 152 7 0 chr3 36203992 36204288 -181832870 + AluSp SINE Alu 1 298 -15 1520 232 118 47 chr3 36204288 36204455 -181832703 - LTR27 LTR ERV1 -479 157 3 1074 168 31 75 chr3 36204455 36204548 -181832610 + MER20 DNA MER1_type 120 216 -3 407 258 10 93 chr3 36205211 36205405 -181831753 - MER5B DNA MER1_type 0 178 1 884 203 7 0 chr3 36205415 36205568 -181831590 + FRAM SINE Alu 4 157 -19 2406 87 7 0 chr3 36206134 36206444 -181830714 - AluSp SINE Alu -1 312 1 341 300 30 0 chr3 36207568 36207668 -181829490 + MIR SINE MIR 4 106 -156 23 0 0 0 chr3 36207668 36207691 -181829467 + AT_rich Low_complexity Low_complexity 1 23 0 1137 142 0 0 chr3 36207692 36207854 -181829304 - AluSg/x SINE Alu -22 290 129 184 98 244 0 chr3 36207858 36207899 -181829259 + MIR SINE MIR 93 143 -119 783 170 7 15 chr3 36207906 36208041 -181829117 - AluJo SINE Alu -177 135 2 337 214 36 12 chr3 36208413 36208497 -181828661 + LTR16A1 LTR ERVL 346 431 -26 347 224 0 0 chr3 36208497 36208564 -181828594 + MIR SINE MIR 186 252 -10 2174 110 0 7 chr3 36209056 36209346 -181827812 + AluSx SINE Alu 1 288 -24 183 344 0 16 chr3 36209567 36209628 -181827530 + L2 LINE L2 3127 3186 -86 705 175 0 8 chr3 36209933 36210053 -181827105 + FLAM_A SINE Alu 16 134 -8 226 291 116 0 chr3 36210233 36210319 -181826839 + MIR3 SINE MIR 65 160 -48 905 230 10 0 chr3 36210324 36210524 -181826634 - MER3 DNA MER1_type -5 204 3 2180 100 7 23 chr3 36210626 36210927 -181826231 + AluSx SINE Alu 1 296 -16 1597 182 6 43 chr3 36211399 36211728 -181825430 - MLT1A1 LTR MaLR -48 317 1 204 285 122 87 chr3 36211729 36211901 -181825257 + L2 LINE L2 3136 3313 0 2340 96 0 0 chr3 36212037 36212330 -181824828 - AluSx SINE Alu -19 293 1 1504 248 14 6 chr3 36212391 36212742 -181824416 + LTR16A LTR ERVL 92 445 -5 2384 102 0 3 chr3 36213814 36214127 -181823031 + AluSq SINE Alu 1 312 -1 1943 115 0 77 chr3 36214153 36214465 -181822693 + AluSx SINE Alu 1 288 -24 1344 141 31 39 chr3 36214785 36214860 -181822298 - L1MC2 LINE L1 -2 6342 6268 2345 98 0 10 chr3 36214860 36215166 -181821992 + AluSx SINE Alu 1 303 -9 1344 141 31 39 chr3 36215166 36215345 -181821813 - L1MC2 LINE L1 -76 6268 6090 1041 213 142 43 chr3 36215453 36215584 -181821574 - L1ME2 LINE L1 -132 6032 5915 2154 125 0 0 chr3 36215584 36215873 -181821285 - AluSg SINE Alu -21 289 1 1041 213 142 43 chr3 36215873 36216093 -181821065 - L1ME2 LINE L1 -249 5915 5646 1380 168 111 68 chr3 36216117 36216541 -181820617 + LTR7 LTR ERV1 1 442 -8 2296 189 42 43 chr3 36216549 36217410 -181819748 + HERVH LTR ERV1 1 1182 -6531 1466 157 4 25 chr3 36217408 36217682 -181819476 + HERVH LTR ERV1 2728 2995 -4718 * 7238 128 5 8 chr3 36217661 36219379 -181817779 + HERVH LTR ERV1 3140 5286 -1805 3078 81 7 11 chr3 36219382 36219815 -181817343 + HERVH LTR ERV1 7283 7713 0 1230 171 92 123 chr3 36219815 36220271 -181816887 + LTR7 LTR ERV1 1 442 -8 1713 175 3 14 chr3 36220272 36220558 -181816600 - AluJo SINE Alu -29 283 1 905 211 26 5 chr3 36220558 36220748 -181816410 - L1ME2 LINE L1 -507 5657 5464 2351 109 0 0 chr3 36220794 36221098 -181816060 + AluSg1 SINE Alu 1 304 -5 3266 151 9 7 chr3 36221306 36221862 -181815296 - L1P LINE L1 -1174 4972 4416 201 359 9 9 chr3 36221981 36222087 -181815071 - MIR SINE MIR 0 262 157 182 294 0 0 chr3 36222624 36222675 -181814483 + MIR SINE MIR 211 261 -1 180 111 0 0 chr3 36222714 36222741 -181814417 + (TAG)n Simple_repeat Simple_repeat 3 29 0 281 96 19 19 chr3 36222929 36222981 -181814177 - MIR SINE MIR -121 141 90 554 308 13 36 chr3 36223722 36223946 -181813212 + MIR SINE MIR 18 236 -26 1677 110 0 45 chr3 36225518 36225763 -181811395 + AluSg SINE Alu 1 234 -76 1315 148 0 10 chr3 36225865 36226067 -181811091 + AluSg/x SINE Alu 97 296 -14 553 220 126 5 chr3 36226069 36226260 -181810898 + L1ME1 LINE L1 2257 2470 -3676 443 219 19 0 chr3 36226268 36226373 -181810785 + L1ME1 LINE L1 3825 3931 -2215 225 164 0 90 chr3 36226876 36226903 -181810255 - L1ME4a LINE L1 -1 6120 6092 2187 122 0 3 chr3 36226903 36227214 -181809944 + AluSx SINE Alu 1 310 -2 225 164 0 90 chr3 36227214 36227253 -181809905 - L1ME4a LINE L1 -29 6092 6060 3127 193 57 147 chr3 36227414 36228080 -181809078 + L1ME1 LINE L1 3912 4636 -1530 1378 206 28 28 chr3 36228080 36228367 -181808791 + AluJo SINE Alu 6 292 -20 3127 193 57 147 chr3 36228367 36229145 -181808013 + L1ME1 LINE L1 4636 5483 -683 2398 73 0 25 chr3 36229145 36229461 -181807697 + AluY SINE Alu 1 308 -3 3127 193 57 147 chr3 36229461 36229728 -181807430 + L1ME1 LINE L1 5483 5655 -511 2015 134 13 0 chr3 36229728 36230034 -181807124 + AluSx SINE Alu 1 310 -2 3127 193 57 147 chr3 36230034 36230380 -181806778 + L1ME1 LINE L1 5655 6031 -135 1558 152 3 87 chr3 36231014 36231350 -181805808 + AluJo SINE Alu 1 310 0 1276 187 0 123 chr3 36231810 36232015 -181805143 - AluSx SINE Alu -10 302 154 1679 127 4 4 chr3 36232015 36232252 -181804906 - AluSg SINE Alu -13 297 61 1276 187 0 123 chr3 36232252 36232388 -181804770 - AluSx SINE Alu -158 154 3 21 36 0 0 chr3 36233035 36233063 -181804095 + AT_rich Low_complexity Low_complexity 1 28 0 290 247 12 12 chr3 36234687 36234768 -181802390 - L2 LINE L2 -35 3278 3198 21 36 0 0 chr3 36234908 36234936 -181802222 + AT_rich Low_complexity Low_complexity 1 28 0 433 145 14 0 chr3 36235164 36235233 -181801925 - AluJ/FRAM SINE Alu -11 301 232 453 175 0 0 chr3 36235341 36235404 -181801754 - AluJ/FLAM SINE Alu -247 65 3 25 51 0 0 chr3 36235409 36235448 -181801710 + AT_rich Low_complexity Low_complexity 1 39 0 2293 111 0 0 chr3 36236386 36236683 -181800475 - AluSx SINE Alu -15 297 1 1398 165 173 8 chr3 36236756 36237004 -181800154 - AluSg SINE Alu -11 289 1 1669 179 0 38 chr3 36237144 36237457 -181799701 + AluJo SINE Alu 1 301 -11 821 285 162 15 chr3 36237553 36237893 -181799265 + LTR16C LTR ERVL 99 488 -3 410 236 14 25 chr3 36237899 36237915 -181799243 + MER5A DNA MER1_type 72 87 -102 1035 208 47 24 chr3 36237915 36238170 -181798988 + MIR SINE MIR 2 262 0 410 236 14 25 chr3 36238170 36238266 -181798892 + MER5A DNA MER1_type 87 189 0 416 220 44 11 chr3 36238532 36238623 -181798535 + MER5A DNA MER1_type 1 94 -95 411 245 0 32 chr3 36238653 36238747 -181798411 - MLT1F1 LTR MaLR -442 125 35 1845 216 233 51 chr3 36238750 36239531 -181797627 - L1MC4 LINE L1 -908 7134 6212 301 273 68 15 chr3 36239662 36239794 -181797364 - L1ME4a LINE L1 -17 6104 5966 284 274 0 0 chr3 36240765 36240827 -181796331 - L2 LINE L2 -10 3262 3201 2347 180 27 56 chr3 36241028 36241512 -181795646 - MER82 DNA MER2_type -22 631 162 1819 189 43 9 chr3 36241509 36241859 -181795299 + MLT1A2 LTR MaLR 6 367 -7 * 279 310 0 0 chr3 36241860 36241931 -181795227 - L2 LINE L2 -55 3258 3188 361 217 9 85 chr3 36241980 36242086 -181795072 + L1ME LINE L1 5622 5719 -443 699 206 22 15 chr3 36242105 36242241 -181794917 + FLAM_A SINE Alu 6 142 0 5914 131 37 32 chr3 36242367 36243741 -181793417 - L1MA4 LINE L1 -2 6298 4900 226 262 16 0 chr3 36243821 36243882 -181793276 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 315 49 0 0 chr3 36244676 36244717 -181792441 + (TG)n Simple_repeat Simple_repeat 2 42 0 1691 143 51 11 chr3 36244988 36245285 -181791873 - AluJb SINE Alu 0 308 1 1667 166 254 56 chr3 36245328 36245847 -181791311 + LTR29 LTR ERV1 1 622 0 1782 176 3 7 chr3 36245886 36246192 -181790966 + AluJo SINE Alu 1 305 -7 257 253 40 27 chr3 36246493 36246568 -181790590 - MIR SINE MIR -96 112 37 725 218 163 44 chr3 36246604 36246923 -181790235 - MLT1J1 LTR MaLR -13 433 104 438 326 34 7 chr3 36247568 36247715 -181789443 - MIR SINE MIR -3 259 109 600 150 7 57 chr3 36247717 36247857 -181789301 + L1MC4 LINE L1 7686 7818 -224 2328 96 0 0 chr3 36247857 36248150 -181789008 - AluSg1 SINE Alu -16 293 1 262 111 0 0 chr3 36248164 36248209 -181788949 - AluSp SINE Alu -2 301 257 1813 72 5 0 chr3 36248209 36248431 -181788727 - AluSp SINE Alu -90 223 1 559 138 0 184 chr3 36248431 36248627 -181788531 + L1MC4 LINE L1 7808 7967 -75 1859 185 25 11 chr3 36248631 36248987 -181788171 - MLT1A2 LTR MaLR -13 361 1 337 158 40 13 chr3 36248988 36249064 -181788094 + L1MC4 LINE L1 7965 8042 0 192 225 25 0 chr3 36249093 36249133 -181788025 - MIR SINE MIR -100 108 68 2059 111 36 16 chr3 36249459 36249765 -181787393 + AluSx SINE Alu 1 312 0 180 170 42 42 chr3 36249905 36250070 -181787088 + (TTATA)n Simple_repeat Simple_repeat 1 165 0 207 0 0 0 chr3 36250232 36250255 -181786903 + (A)n Simple_repeat Simple_repeat 1 23 0 2473 65 0 16 chr3 36250256 36250566 -181786592 + AluY SINE Alu 1 305 -6 1997 114 42 7 chr3 36250566 36250855 -181786303 + AluSc SINE Alu 1 299 -10 706 179 0 0 chr3 36250957 36251063 -181786095 - FRAM SINE Alu -17 159 54 242 281 158 53 chr3 36251432 36251546 -181785612 - MIR SINE MIR -63 145 20 2127 110 0 0 chr3 36251584 36251866 -181785292 - AluSg1 SINE Alu -16 293 12 572 163 96 22 chr3 36253303 36253368 -181783790 - MER69 DNA AcHobo 0 2526 2467 2100 120 3 22 chr3 36253368 36253710 -181783448 + AluSx SINE Alu 1 312 0 572 163 96 22 chr3 36253710 36253779 -181783379 - MER69 DNA AcHobo -59 2467 2382 311 217 0 0 chr3 36253932 36253992 -181783166 - MER69 DNA AcHobo -2465 61 2 1864 151 10 10 chr3 36254263 36254555 -181782603 + AluSx SINE Alu 1 292 -20 259 273 0 0 chr3 36254583 36254649 -181782509 - L1ME1 LINE L1 -50 6116 6051 22 0 0 0 chr3 36254694 36254716 -181782442 + AT_rich Low_complexity Low_complexity 1 22 0 312 27 0 0 chr3 36254923 36254960 -181782198 + (TG)n Simple_repeat Simple_repeat 2 38 0 2482 123 25 5 chr3 36254982 36255349 -181781809 + THE1C LTR MaLR 2 375 0 871 301 15 4 chr3 36255829 36256088 -181781070 + MIR SINE MIR 1 262 0 2232 102 3 10 chr3 36256561 36256865 -181780293 + AluSx SINE Alu 1 302 -10 1140 136 27 0 chr3 36257549 36257733 -181779425 - MER57B LTR ERV1 0 434 246 568 138 50 8 chr3 36258162 36258300 -181778858 - L1MA5 LINE L1 -162 6006 5875 202 336 16 8 chr3 36258365 36258493 -181778665 + GA-rich Low_complexity Low_complexity 1 129 0 2140 131 0 16 chr3 36260565 36260877 -181776281 + AluSq SINE Alu 1 307 -6 2338 104 7 0 chr3 36260878 36261186 -181775972 + AluSq SINE Alu 1 310 -3 384 247 31 12 chr3 36261288 36261450 -181775708 + (TA)n Simple_repeat Simple_repeat 2 166 0 2069 113 51 0 chr3 36261775 36262068 -181775090 - AluSg SINE Alu -2 308 1 651 200 0 0 chr3 36262212 36262312 -181774846 - AluJ/FLAM SINE Alu -211 101 2 261 314 14 0 chr3 36262344 36262414 -181774744 + MLT1J LTR MaLR 110 180 -331 * 284 242 32 0 chr3 36262384 36262446 -181774712 + MLT1L LTR MaLR 215 278 -337 231 265 29 0 chr3 36262817 36262885 -181774273 + GA-rich Low_complexity Low_complexity 3 72 0 4247 140 13 13 chr3 36262956 36263140 -181774018 - MER41B LTR ERV1 0 635 452 2106 110 7 26 chr3 36263140 36263449 -181773709 - AluSx SINE Alu -9 303 1 4247 140 13 13 chr3 36263449 36263899 -181773259 - MER41B LTR ERV1 -182 453 1 1938 166 0 3 chr3 36264104 36264417 -181772741 + AluJb SINE Alu 1 312 0 231 285 41 32 chr3 36264721 36264844 -181772314 + LTR16A1 LTR ERVL 333 456 -1 502 156 1 0 chr3 36266082 36266172 -181770986 - L1ME2 LINE L1 -1 6169 6078 2128 110 0 7 chr3 36266174 36266456 -181770702 + AluSx SINE Alu 1 280 -32 227 31 31 0 chr3 36266460 36266492 -181770666 + (CAAAA)n Simple_repeat Simple_repeat 5 37 0 850 201 58 83 chr3 36266626 36266750 -181770408 + ORSL DNA AcHobo 1 127 -148 2384 78 0 0 chr3 36266750 36267046 -181770112 + AluY SINE Alu 3 298 -13 186 43 0 0 chr3 36267046 36267069 -181770089 + (TA)n Simple_repeat Simple_repeat 1 23 0 850 201 58 83 chr3 36267069 36267221 -181769937 + ORSL DNA AcHobo 125 271 -4 28 48 0 0 chr3 36267667 36267709 -181769449 + GC_rich Low_complexity Low_complexity 1 42 0 326 119 48 0 chr3 36267781 36267865 -181769293 + (CCG)n Simple_repeat Simple_repeat 3 90 0 628 149 43 0 chr3 36269336 36269430 -181767728 + AluS SINE Alu 2 99 -214 1635 113 34 8 chr3 36269430 36269669 -181767489 + AluSx SINE Alu 54 298 -14 1068 90 8 0 chr3 36270768 36270902 -181766256 + AluY SINE Alu 1 135 -176 321 186 60 18 chr3 36270932 36271099 -181766059 + A-rich Low_complexity Low_complexity 1 174 0 230 207 60 20 chr3 36271116 36271266 -181765892 + A-rich Low_complexity Low_complexity 1 156 0 1222 114 49 0 chr3 36271268 36271452 -181765706 + AluSc SINE Alu 115 307 -2 1834 126 59 0 chr3 36272132 36272403 -181764755 - AluSx SINE Alu -25 287 1 534 264 65 78 chr3 36273293 36273524 -181763634 + Charlie8 DNA MER1_type 4 231 -2186 1913 148 14 0 chr3 36273699 36273976 -181763182 + AluSx SINE Alu 1 281 -31 528 81 0 0 chr3 36274076 36274150 -181763008 + Alu SINE Alu 235 308 -1 36 0 0 0 chr3 36274655 36274691 -181762467 + AT_rich Low_complexity Low_complexity 1 36 0 2150 105 3 38 chr3 36275557 36275872 -181761286 - AluSx SINE Alu -8 304 1 927 262 97 57 chr3 36275908 36276306 -181760852 + L1M4 LINE L1 4067 4505 -1641 1625 186 7 0 chr3 36276306 36276613 -181760545 + AluJb SINE Alu 1 309 0 927 262 97 57 chr3 36276613 36276882 -181760276 + L1M4 LINE L1 4505 4762 -1384 2239 133 0 0 chr3 36276882 36277191 -181759967 + AluSx SINE Alu 1 309 -3 719 303 201 25 chr3 36277290 36277733 -181759425 + MLT1G1 LTR MaLR 11 531 -64 1315 144 9 18 chr3 36277778 36278007 -181759151 + AluJb SINE Alu 82 308 -4 207 0 0 0 chr3 36278010 36278033 -181759125 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 427 294 60 44 chr3 36278159 36278475 -181758683 + L1M4 LINE L1 2147 2467 -3679 265 274 75 28 chr3 36278482 36278588 -181758570 - MLT1I LTR MaLR -3 406 296 276 279 63 54 chr3 36278701 36278812 -181758346 - MLT1I LTR MaLR -286 123 12 21 0 0 0 chr3 36279072 36279093 -181758065 + AT_rich Low_complexity Low_complexity 1 21 0 1754 163 39 3 chr3 36279106 36279389 -181757769 + AluJo SINE Alu 3 295 -17 16187 169 41 21 chr3 36279574 36285582 -181751576 + L1MA1 LINE L1 11 5894 -1827 2257 105 3 3 chr3 36285582 36285886 -181751272 + AluSx SINE Alu 1 304 -8 16187 169 41 21 chr3 36285886 36286301 -181750857 + L1MA1 LINE L1 5894 6299 -1422 1969 155 3 0 chr3 36286301 36286597 -181750561 + AluSx SINE Alu 1 297 -15 16187 169 41 21 chr3 36286597 36287504 -181749654 + L1MA1 LINE L1 6299 7721 0 2825 207 38 48 chr3 36287502 36288193 -181748965 + L1ME1 LINE L1 5350 6033 -133 * 873 195 58 137 chr3 36288909 36289304 -181747854 + MLT1A2 LTR MaLR 1 364 -10 222 44 44 22 chr3 36289338 36289383 -181747775 + (TA)n Simple_repeat Simple_repeat 1 46 0 891 224 52 56 chr3 36289394 36289680 -181747478 + L1ME3A LINE L1 5860 6144 -26 323 285 70 0 chr3 36289710 36289882 -181747276 + L1MC1 LINE L1 5214 5397 -749 428 300 62 12 chr3 36289931 36290091 -181747067 + MIR SINE MIR 81 248 -14 227 258 133 39 chr3 36290143 36290271 -181746887 + L1MC1 LINE L1 5407 5546 -2262 31 82 0 0 chr3 36290337 36290410 -181746748 + AT_rich Low_complexity Low_complexity 1 73 0 1924 162 51 6 chr3 36290542 36290876 -181746282 + L1MC1 LINE L1 5985 6333 0 1083 136 0 0 chr3 36291308 36291470 -181745688 + AluSg/x SINE Alu 148 309 -3 1826 153 27 17 chr3 36291683 36291978 -181745180 + AluJo SINE Alu 2 299 -13 25 65 0 0 chr3 36292023 36292069 -181745089 + AT_rich Low_complexity Low_complexity 1 46 0 2360 89 0 10 chr3 36292128 36292442 -181744716 + AluSx SINE Alu 1 311 -1 405 327 20 20 chr3 36293477 36293627 -181743531 - L2 LINE L2 0 3272 3123 692 251 112 18 chr3 36293889 36294112 -181743046 - MIR SINE MIR -3 259 16 261 255 0 0 chr3 36294455 36294506 -181742652 + L2 LINE L2 3219 3269 -3 459 273 70 0 chr3 36294515 36294643 -181742515 - LTR16C LTR ERVL 0 491 355 1699 182 20 0 chr3 36294643 36294940 -181742218 + AluJb SINE Alu 1 303 -9 612 259 184 9 chr3 36294943 36295171 -181741987 - MER57B LTR ERV1 -165 269 2 241 246 0 31 chr3 36295357 36295422 -181741736 + GA-rich Low_complexity Low_complexity 3 65 0 2285 76 31 0 chr3 36296308 36296599 -181740559 + AluY SINE Alu 1 300 -11 486 306 126 10 chr3 36297281 36297304 -181739854 + MIR SINE MIR 1 20 -242 1797 172 47 0 chr3 36297304 36297600 -181739558 + AluJo SINE Alu 1 310 -2 486 306 126 10 chr3 36297600 36297775 -181739383 + MIR SINE MIR 20 222 -40 267 169 89 202 chr3 36298332 36298412 -181738746 + L1M4b LINE L1 11 74 -6785 1691 130 20 0 chr3 36298412 36298659 -181738499 + AluJo SINE Alu 36 287 -25 267 169 89 202 chr3 36298659 36298702 -181738456 + L1M4b LINE L1 74 120 -6739 2336 67 40 0 chr3 36298702 36299000 -181738158 + AluY SINE Alu 1 310 -1 864 226 44 67 chr3 36299017 36299287 -181737871 + L1M4b LINE L1 104 367 -6492 1973 134 0 0 chr3 36299434 36299702 -181737456 - AluSg SINE Alu -42 268 1 227 296 176 28 chr3 36300373 36300515 -181736643 + MIR3 SINE MIR 24 186 -22 321 325 172 26 chr3 36300688 36301072 -181736086 - L2 LINE L2 -468 2846 2407 554 214 0 10 chr3 36301107 36301205 -181735953 + AluSg/x SINE Alu 113 209 -103 1421 181 107 65 chr3 36301205 36301637 -181735521 + LTR7 LTR ERV1 1 450 0 2805 154 22 66 chr3 36301637 36302286 -181734872 + HERVH LTR ERV1 1 620 -7093 * 11973 111 7 29 chr3 36302274 36304131 -181733027 + HERVH LTR ERV1 756 2571 -5142 3461 102 12 6 chr3 36304119 36304618 -181732540 + HERVH LTR ERV1 5318 5819 -1894 * 2564 103 18 13 chr3 36304618 36305006 -181732152 + HERVH LTR ERV1 7324 7713 0 1284 183 109 67 chr3 36305006 36305438 -181731720 + LTR7 LTR ERV1 1 450 0 1337 160 44 0 chr3 36305438 36305663 -181731495 + AluJo SINE Alu 70 304 -8 376 298 63 121 chr3 36305792 36306221 -181730937 + MLT1K LTR MaLR 180 583 -5 411 275 63 7 chr3 36306230 36306372 -181730786 - L2 LINE L2 -898 2416 2267 542 363 50 40 chr3 36306386 36306440 -181730718 - L3 LINE CR1 -910 667 615 1820 172 0 13 chr3 36306440 36306742 -181730416 + AluJb SINE Alu 4 301 -11 542 363 50 40 chr3 36306742 36307086 -181730072 - L3 LINE CR1 -962 615 265 820 71 0 0 chr3 36307151 36307249 -181729909 + HY3 scRNA scRNA 2 99 -2 453 243 98 35 chr3 36307541 36307714 -181729444 + MIR SINE MIR 47 230 -32 189 107 0 0 chr3 36307722 36307750 -181729408 + (T)n Simple_repeat Simple_repeat 1 28 0 1523 165 0 0 chr3 36307766 36307996 -181729162 - AluJb SINE Alu -82 230 1 440 280 122 0 chr3 36308022 36308129 -181729029 + AluSq/x SINE Alu 2 121 -192 500 154 13 0 chr3 36308140 36308218 -181728940 - MER51A LTR ERV1 -87 547 469 21 36 0 0 chr3 36308225 36308253 -181728905 + AT_rich Low_complexity Low_complexity 1 28 0 2235 118 0 3 chr3 36308638 36308934 -181728224 - AluSq SINE Alu -18 295 1 891 354 9 121 chr3 36308937 36309276 -181727882 - AluSx SINE Alu -1 301 1 223 354 40 0 chr3 36309419 36309518 -181727640 + L2 LINE L2 3169 3271 -1 273 219 67 84 chr3 36309775 36309894 -181727264 + MLT1J LTR MaLR 11 127 -384 374 258 0 21 chr3 36310366 36310463 -181726695 + HERVL32 LTR ERVL 3323 3417 -1 2461 77 3 13 chr3 36310463 36310775 -181726383 + AluSp SINE Alu 1 309 -4 1833 132 108 35 chr3 36310792 36311134 -181726024 + LTR32 LTR ERVL 13 379 -92 2282 94 0 10 chr3 36311144 36311453 -181725705 + AluSx SINE Alu 1 306 -6 240 234 13 39 chr3 36311523 36311600 -181725558 + GA-rich Low_complexity Low_complexity 1 75 0 808 125 0 76 chr3 36311652 36311796 -181725362 + FLAM_C SINE Alu 11 143 0 225 119 0 0 chr3 36311987 36312029 -181725129 + (TG)n Simple_repeat Simple_repeat 2 43 0 2296 98 3 3 chr3 36312052 36312358 -181724800 + AluSq SINE Alu 1 306 -7 1227 184 55 122 chr3 36312418 36312609 -181724549 + MLT2C2 LTR ERVL 52 254 -210 2245 91 0 7 chr3 36312609 36312917 -181724241 + AluSg SINE Alu 1 306 0 1227 184 55 122 chr3 36312917 36313117 -181724041 + MLT2C2 LTR ERVL 254 415 -49 450 53 0 0 chr3 36313117 36313174 -181723984 + (CA)n Simple_repeat Simple_repeat 1 57 0 1227 184 55 122 chr3 36313174 36313216 -181723942 + MLT2C2 LTR ERVL 415 458 -6 322 245 0 0 chr3 36313224 36313277 -181723881 - MER45 DNA AcHobo -900 53 1 1174 194 76 64 chr3 36313622 36313951 -181723207 - MER46C DNA MER2_type -1 337 5 2266 114 3 0 chr3 36314456 36314764 -181722394 - AluSc SINE Alu 0 309 1 1552 180 7 20 chr3 36315330 36315625 -181721533 - AluJo SINE Alu -21 291 1 2172 112 0 3 chr3 36315728 36316024 -181721134 + AluSx SINE Alu 1 295 -17 186 43 0 0 chr3 36316383 36316406 -181720752 + (GA)n Simple_repeat Simple_repeat 2 24 0 376 219 104 0 chr3 36316548 36316644 -181720514 + MER53 DNA DNA 2 107 -82 356 350 107 41 chr3 36316699 36317276 -181719882 - L2 LINE L2 -2 3270 2656 1705 249 30 40 chr3 36317467 36317961 -181719197 - LTR16C LTR ERVL -2 489 1 632 308 59 45 chr3 36317995 36318349 -181718809 - L3 LINE CR1 -72 1505 1147 224 285 198 11 chr3 36318872 36319001 -181718157 - MIR SINE MIR -60 148 33 926 289 124 36 chr3 36319007 36319220 -181717938 + MLT1K LTR MaLR 10 203 -385 180 0 0 0 chr3 36319220 36319240 -181717918 + (TTTTA)n Simple_repeat Simple_repeat 4 23 0 926 289 124 36 chr3 36319240 36319251 -181717907 + MLT1K LTR MaLR 203 212 -376 2045 124 28 0 chr3 36319251 36319533 -181717625 - AluSg SINE Alu -20 290 1 926 289 124 36 chr3 36319533 36319774 -181717384 + MLT1K LTR MaLR 212 517 -71 231 288 27 0 chr3 36319784 36319857 -181717301 + CT-rich Low_complexity Low_complexity 5 79 0 2517 174 24 9 chr3 36320040 36320460 -181716698 + MSTB LTR MaLR 1 426 0 2201 113 3 0 chr3 36320512 36320805 -181716353 - AluSg SINE Alu -16 294 1 472 271 16 39 chr3 36320814 36320943 -181716215 - MIR SINE MIR -67 141 16 320 326 65 14 chr3 36320958 36321096 -181716062 + MIR3 SINE MIR 48 192 -16 183 129 0 0 chr3 36321188 36321219 -181715939 + (CA)n Simple_repeat Simple_repeat 1 31 0 2200 109 0 10 chr3 36321671 36321964 -181715194 - AluSg1 SINE Alu -18 291 2 28 29 0 0 chr3 36321964 36321999 -181715159 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr3 36322022 36322043 -181715115 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1903 160 0 0 chr3 36322046 36322333 -181714825 - AluSx SINE Alu -25 287 1 1628 204 83 39 chr3 36322531 36322942 -181714216 - MER21A LTR ERV1 0 931 503 1243 184 18 9 chr3 36323015 36323238 -181713920 - MER21B LTR ERV1 -638 225 1 1615 153 10 37 chr3 36323751 36324045 -181713113 - AluJb SINE Alu -18 294 9 249 205 0 58 chr3 36324421 36324646 -181712512 + AluJo SINE Alu 2 291 -11 491 225 62 62 chr3 36325384 36325562 -181711596 + MIR SINE MIR 32 209 -53 181 271 0 21 chr3 36325683 36325731 -181711427 + L2 LINE L2 3209 3255 -17 2214 124 0 3 chr3 36325751 36326050 -181711108 + AluSx SINE Alu 1 298 -14 1988 121 13 20 chr3 36326079 36326377 -181710781 + AluSx SINE Alu 1 296 -16 626 68 11 0 chr3 36326493 36326581 -181710577 + (TTTC)n Simple_repeat Simple_repeat 4 92 0 2158 110 17 3 chr3 36326692 36326983 -181710175 - AluSq SINE Alu -18 295 1 277 269 25 42 chr3 36327057 36327176 -181709982 - LTR67 LTR ERVL 0 557 441 1869 140 63 3 chr3 36327819 36328105 -181709053 - AluJb SINE Alu -9 303 1 1751 141 8 4 chr3 36328116 36328378 -181708780 - AluSx SINE Alu -17 295 33 449 129 0 0 chr3 36328378 36328440 -181708718 - AluS SINE Alu -246 67 6 423 248 35 35 chr3 36328456 36328569 -181708589 + MLT1J2 LTR MaLR 87 199 -251 2318 112 0 3 chr3 36328571 36328884 -181708274 - AluSx SINE Alu 0 312 1 1240 124 0 0 chr3 36328894 36329071 -181708087 - AluSq SINE Alu 0 313 137 2287 111 3 0 chr3 36329091 36329388 -181707770 - AluSq SINE Alu -15 298 1 367 360 37 0 chr3 36329545 36329681 -181707477 + MIR3 SINE MIR 14 154 -54 243 227 91 0 chr3 36330446 36330512 -181706646 - L2 LINE L2 -1 3312 3241 284 45 0 0 chr3 36330560 36330604 -181706554 - AluY SINE Alu 0 300 257 1232 198 78 30 chr3 36330705 36331008 -181706150 + AluJo SINE Alu 32 347 0 186 253 36 60 chr3 36331226 36331309 -181705849 + MIR3 SINE MIR 120 200 -8 1260 218 90 96 chr3 36332193 36332720 -181704438 + L1MC5 LINE L1 7174 7697 -264 297 0 0 0 chr3 36332720 36332753 -181704405 + (TA)n Simple_repeat Simple_repeat 2 34 0 1260 218 90 96 chr3 36332753 36332988 -181704170 + L1MC5 LINE L1 7697 7932 -29 279 311 104 16 chr3 36333091 36333274 -181703884 - MIR SINE MIR -57 205 7 1857 84 21 0 chr3 36333303 36333540 -181703618 + AluSx SINE Alu 5 246 -66 273 57 0 0 chr3 36333546 36333581 -181703577 + (T)n Simple_repeat Simple_repeat 1 35 0 180 0 0 0 chr3 36337812 36337832 -181699326 + (T)n Simple_repeat Simple_repeat 1 20 0 351 0 0 0 chr3 36342801 36342840 -181694318 + (A)n Simple_repeat Simple_repeat 1 39 0 206 205 0 0 chr3 36343883 36343922 -181693236 + (CCG)n Simple_repeat Simple_repeat 2 40 0 258 143 0 0 chr3 36344169 36344218 -181692940 + (CGG)n Simple_repeat Simple_repeat 3 51 0 285 98 0 0 chr3 36345126 36345167 -181691991 + (T)n Simple_repeat Simple_repeat 1 41 0 204 132 79 0 chr3 36347467 36347505 -181689653 + (CATTA)n Simple_repeat Simple_repeat 4 44 0 220 186 0 0 chr3 36349429 36349472 -181687686 + (CAT)n Simple_repeat Simple_repeat 3 45 0 303 261 11 11 chr3 36350405 36350497 -181686661 + MIR SINE MIR 63 154 -108 341 270 26 0 chr3 36351527 36351642 -181685516 - MIR SINE MIR -106 156 39 486 303 5 21 chr3 36351893 36352081 -181685077 - MIR SINE MIR -4 258 74 24 32 0 0 chr3 36353073 36353104 -181684054 + AT_rich Low_complexity Low_complexity 1 31 0 192 254 63 32 chr3 36354017 36354080 -181683078 - L2 LINE L2 -15 3257 3193 888 179 6 0 chr3 36354159 36354321 -181682837 + MER5B DNA MER1_type 1 163 -15 353 203 214 16 chr3 36354721 36354830 -181682328 - HsTC2 DNA Tc2 -4 1894 1808 1966 118 20 49 chr3 36354830 36355134 -181682024 - AluSx SINE Alu -17 295 1 353 203 214 16 chr3 36355134 36355206 -181681952 - HsTC2 DNA Tc2 -90 1808 1677 410 277 92 0 chr3 36355214 36355333 -181681825 - HsTC2 DNA Tc2 -1763 135 6 444 283 29 29 chr3 36355354 36355527 -181681631 - MIR SINE MIR -41 221 49 1988 243 35 10 chr3 36355884 36356402 -181680756 - L1ME3A LINE L1 -26 6144 5614 286 170 66 0 chr3 36356856 36356962 -181680196 + (TA)n Simple_repeat Simple_repeat 2 114 0 267 313 54 0 chr3 36357404 36357516 -181679642 + MLT1L LTR MaLR 368 485 -130 334 280 125 39 chr3 36357713 36357945 -181679213 - L1ME LINE L1 -387 5734 5483 304 276 129 55 chr3 36358303 36358520 -181678638 - L1ME LINE L1 -1179 4967 4735 1666 185 0 4 chr3 36358584 36358865 -181678293 - AluJb SINE Alu -32 280 1 1408 168 73 52 chr3 36358921 36359207 -181677951 + AluSg SINE Alu 1 292 -18 1790 193 11 45 chr3 36359406 36359780 -181677378 - MLT1A1 LTR MaLR -4 361 1 2352 85 20 0 chr3 36359911 36360204 -181676954 + AluSg SINE Alu 1 299 -11 272 27 27 0 chr3 36360204 36360241 -181676917 + (TA)n Simple_repeat Simple_repeat 2 39 0 1049 217 35 0 chr3 36360829 36361059 -181676099 + Charlie1 DNA MER1_type 2 239 -2522 751 187 27 0 chr3 36361033 36361183 -181675975 + Charlie1 DNA MER1_type 2608 2761 0 * 1618 165 46 11 chr3 36361264 36361549 -181675609 - AluJo SINE Alu -17 295 1 2289 89 7 14 chr3 36361631 36361924 -181675234 - AluSx SINE Alu -21 291 1 1835 113 0 4 chr3 36362695 36362942 -181674216 - AluSx SINE Alu -66 246 1 2487 71 0 0 chr3 36363393 36363704 -181673454 - AluY SINE Alu 0 311 1 366 315 0 31 chr3 36363833 36363960 -181673198 + L2 LINE L2 3191 3313 0 310 85 21 0 chr3 36364281 36364328 -181672830 - MLT2C2 LTR ERVL 0 464 417 249 299 13 0 chr3 36364674 36364751 -181672407 - L2 LINE L2 -6 3266 3189 1273 253 14 0 chr3 36365078 36365195 -181671963 + AluJo SINE Alu 1 115 -197 186 43 0 0 chr3 36365195 36365218 -181671940 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1273 253 14 0 chr3 36365218 36365377 -181671781 + AluJo SINE Alu 115 281 -31 2337 92 3 0 chr3 36365497 36365789 -181671369 - AluSp SINE Alu -20 293 1 1821 130 0 48 chr3 36366203 36366518 -181670640 + AluSx SINE Alu 1 300 -12 24 0 0 0 chr3 36366613 36366637 -181670521 + AT_rich Low_complexity Low_complexity 1 24 0 265 182 136 0 chr3 36366918 36366984 -181670174 - L1ME LINE L1 -1454 4692 4618 226 192 0 39 chr3 36367123 36367175 -181669983 - L1ME LINE L1 -1519 4627 4578 2065 128 7 10 chr3 36367485 36367782 -181669376 - AluSx SINE Alu -16 296 1 638 340 85 12 chr3 36367800 36368363 -181668795 - L2 LINE L2 0 3313 2706 3523 32 0 0 chr3 36368363 36368769 -181668389 + L1PA3 LINE L1 5747 6152 -3 296 351 72 14 chr3 36368838 36369060 -181668098 - L2 LINE L2 -596 2718 2484 239 174 110 64 chr3 36370012 36370121 -181667037 - L1ME LINE L1 -703 5463 5350 2432 71 0 46 chr3 36370139 36370464 -181666694 + AluSg SINE Alu 1 310 0 24 0 0 0 chr3 36370507 36370531 -181666627 + AT_rich Low_complexity Low_complexity 1 24 0 1260 122 0 6 chr3 36370703 36370883 -181666275 + AluSc SINE Alu 118 296 -13 345 167 0 15 chr3 36370883 36370949 -181666209 + MLT1A1 LTR MaLR 301 365 0 1747 189 79 0 chr3 36371029 36371420 -181665738 + L1MC3 LINE L1 7364 7785 0 1078 245 81 81 chr3 36371927 36371957 -181665201 + MLT1H1 LTR MaLR 32 61 -494 1640 174 40 23 chr3 36371957 36372256 -181664902 + AluJo SINE Alu 1 304 -8 1078 245 81 81 chr3 36372256 36372747 -181664411 + MLT1H1 LTR MaLR 60 553 -2 23 0 0 0 chr3 36373091 36373114 -181664044 + AT_rich Low_complexity Low_complexity 1 23 0 314 205 13 0 chr3 36373163 36373241 -181663917 + GA-rich Low_complexity Low_complexity 2 80 0 668 303 25 25 chr3 36373327 36373565 -181663593 - MIR SINE MIR -13 249 12 203 0 0 36 chr3 36373615 36373643 -181663515 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 264 248 201 20 chr3 36373904 36374053 -181663105 + MIR SINE MIR 60 235 -27 234 313 52 10 chr3 36374063 36374159 -181662999 + MIR SINE MIR 8 107 -155 1114 211 87 13 chr3 36374347 36374646 -181662512 - L1ME1 LINE L1 0 6166 5846 332 276 105 0 chr3 36375580 36375685 -181661473 - L2 LINE L2 -1 3312 3197 258 254 0 0 chr3 36377365 36377420 -181659738 - L2 LINE L2 -7 3306 3252 258 330 11 11 chr3 36377721 36377815 -181659343 - MIR SINE MIR -110 152 59 220 281 79 53 chr3 36377994 36378108 -181659050 + MIR SINE MIR 56 172 -90 1472 190 7 31 chr3 36378354 36378671 -181658487 + AluJb SINE Alu 1 310 0 1991 112 52 3 chr3 36378789 36379075 -181658083 + AluSq SINE Alu 1 300 -13 2351 180 0 2 chr3 36379470 36379870 -181657288 - L1MB3 LINE L1 -11 6172 5774 2542 244 26 10 chr3 36379870 36380496 -181656662 + L1ME3A LINE L1 5507 6142 -28 1210 86 0 0 chr3 36380536 36380722 -181656436 + AluSc SINE Alu 133 318 0 1972 134 0 3 chr3 36380735 36381039 -181656119 + AluSx SINE Alu 1 303 0 1577 175 4 26 chr3 36381370 36381638 -181655520 + AluJo SINE Alu 2 263 -49 24 0 0 0 chr3 36381653 36381677 -181655481 + AT_rich Low_complexity Low_complexity 1 24 0 337 341 131 28 chr3 36381724 36381900 -181655258 - MIR3 SINE MIR -7 201 8 1846 203 157 13 chr3 36381984 36382437 -181654721 + MLT1H LTR MaLR 30 547 -2 191 294 75 81 chr3 36383446 36383606 -181653552 - L2 LINE L2 -1 3312 3154 2030 152 7 0 chr3 36383653 36383963 -181653195 - AluSx SINE Alu 0 312 1 13652 143 24 6 chr3 36384241 36386374 -181650784 + Tigger7 DNA MER2_type 2 2173 -314 903 179 19 0 chr3 36386374 36386530 -181650628 - FRAM SINE Alu -17 159 1 387 0 0 0 chr3 36386630 36386673 -181650485 + (A)n Simple_repeat Simple_repeat 1 43 0 680 179 173 0 chr3 36387695 36387863 -181649295 + MIR SINE MIR 58 254 -8 1277 280 103 0 chr3 36388400 36388807 -181648351 - LTR16C LTR ERVL 0 491 43 294 153 0 69 chr3 36388895 36388967 -181648191 - L1ME4a LINE L1 -105 6016 5950 2023 154 0 10 chr3 36389568 36389879 -181647279 + AluJb SINE Alu 1 308 -4 2633 207 39 25 chr3 36390091 36390725 -181646433 + L1MC4 LINE L1 7228 7870 -172 386 250 93 43 chr3 36390886 36391026 -181646132 + L1ME4a LINE L1 5946 6092 -29 786 108 0 0 chr3 36391210 36391312 -181645846 - AluY SINE Alu -16 295 194 4237 270 101 32 chr3 36391374 36391512 -181645646 + HAL1 LINE L1 230 357 -2150 2015 125 54 65 chr3 36391512 36391880 -181645278 - THE1B LTR MaLR 0 364 1 4237 270 101 32 chr3 36391880 36392589 -181644569 + HAL1 LINE L1 357 1016 -1491 2804 26 0 0 chr3 36392589 36392900 -181644258 + AluYb8 SINE Alu 1 311 -7 4237 270 101 32 chr3 36392900 36393852 -181643306 + HAL1 LINE L1 1016 2166 -341 2265 108 0 10 chr3 36393852 36394166 -181642992 + AluSx SINE Alu 1 311 -1 4237 270 101 32 chr3 36394166 36394237 -181642921 + HAL1 LINE L1 2166 2231 -276 691 147 0 0 chr3 36394293 36394395 -181642763 + AluSg/x SINE Alu 199 300 -10 261 0 0 0 chr3 36394531 36394560 -181642598 + (ATTG)n Simple_repeat Simple_repeat 1 29 0 2987 71 3 3 chr3 36394560 36394928 -181642230 - L1PA7 LINE L1 -17 6137 5770 535 275 81 40 chr3 36394938 36395285 -181641873 + MLT1L LTR MaLR 144 536 -79 1487 220 20 43 chr3 36395662 36396012 -181641146 + MLT1A1 LTR MaLR 1 342 -23 780 179 8 0 chr3 36396020 36396143 -181641015 - AluJb SINE Alu -187 125 2 304 211 0 0 chr3 36396146 36396198 -181640960 + MLT1A1 LTR MaLR 323 374 0 232 133 33 0 chr3 36396861 36396921 -181640237 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 225 242 48 0 chr3 36397100 36397162 -181639996 + MLT1L LTR MaLR 549 613 -2 996 172 0 0 chr3 36398307 36398464 -181638694 + FRAM SINE Alu 8 164 -12 444 308 27 36 chr3 36398579 36398800 -181638358 + L2 LINE L2 2588 2806 -508 2005 201 80 30 chr3 36398913 36399350 -181637808 + MLT1C LTR MaLR 7 465 -2 289 297 201 10 chr3 36399354 36399563 -181637595 + L2 LINE L2 2976 3224 -48 191 250 125 0 chr3 36399751 36399807 -181637351 - MIR3 SINE MIR -31 177 115 1095 83 0 0 chr3 36401302 36401434 -181635724 + AluSp SINE Alu 1 132 -181 2252 122 0 0 chr3 36401436 36401739 -181635419 + AluSx SINE Alu 1 303 -9 1846 110 21 11 chr3 36401902 36402226 -181634932 + AluSp SINE Alu 1 327 0 563 279 118 27 chr3 36402497 36402759 -181634399 - LTR50 LTR ERVL 0 795 510 565 241 74 42 chr3 36402774 36402990 -181634168 - LTR50 LTR ERVL -569 226 4 822 262 53 17 chr3 36403016 36403351 -181633807 - MLT1I LTR MaLR -9 400 18 233 294 28 64 chr3 36403832 36403941 -181633217 + L2 LINE L2 3197 3301 -12 2009 163 0 3 chr3 36404489 36404795 -181632363 - AluJb SINE Alu -7 305 1 400 302 99 6 chr3 36405050 36405232 -181631926 - L1MC4a LINE L1 -1925 5883 5685 198 0 0 0 chr3 36405675 36405697 -181631461 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2064 137 0 13 chr3 36405789 36406096 -181631062 - AluSx SINE Alu -9 303 1 1790 164 3 3 chr3 36406564 36406906 -181630252 - AluJb SINE Alu 0 342 1 24 0 0 0 chr3 36406915 36406939 -181630219 + AT_rich Low_complexity Low_complexity 1 24 0 335 281 111 20 chr3 36407288 36407441 -181629717 - MIR SINE MIR -93 169 3 306 0 0 0 chr3 36408754 36408788 -181628370 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2154 128 0 7 chr3 36408967 36409272 -181627886 - AluSx SINE Alu -9 303 1 1851 179 3 6 chr3 36410489 36410802 -181626356 - AluJo SINE Alu 0 312 1 273 29 0 0 chr3 36410857 36410891 -181626267 + (TTA)n Simple_repeat Simple_repeat 3 36 0 6687 31 0 0 chr3 36410891 36411623 -181625535 - L1PA3 LINE L1 -18 6137 5406 511 250 111 14 chr3 36411763 36411907 -181625251 - MER115 DNA AcHobo -485 208 51 183 200 0 0 chr3 36411907 36411947 -181625211 - MER5C DNA MER1_type -1 323 284 417 287 0 39 chr3 36412036 36412165 -181624993 - MER5C DNA MER1_type -200 124 1 626 304 51 26 chr3 36412410 36412567 -181624591 - Tigger8 DNA MER2_type -66 600 449 2423 87 6 0 chr3 36412567 36412878 -181624280 + AluSp SINE Alu 1 313 0 626 304 51 26 chr3 36412878 36413032 -181624126 - Tigger8 DNA MER2_type -217 449 281 383 145 12 0 chr3 36413122 36413205 -181623953 + (TCTA)n Simple_repeat Simple_repeat 3 86 0 1438 267 56 3 chr3 36414249 36414608 -181622550 + LTR16C LTR ERVL 114 491 0 2370 112 0 0 chr3 36414654 36414966 -181622192 + AluSx SINE Alu 1 312 0 863 255 110 83 chr3 36415067 36415503 -181621655 - MLT1J2 LTR MaLR 0 450 3 38 61 0 0 chr3 36415550 36415616 -181621542 + AT_rich Low_complexity Low_complexity 1 66 0 421 231 39 10 chr3 36415616 36415720 -181621438 + L2 LINE L2 3163 3269 -3 1259 279 88 9 chr3 36416164 36416583 -181620575 - L1ME3A LINE L1 -5 6165 5714 1613 188 3 11 chr3 36416746 36417028 -181620130 + AluJb SINE Alu 3 282 -30 333 118 0 0 chr3 36417032 36417083 -181620075 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 897 271 62 60 chr3 36417122 36417587 -181619571 - MLT1H LTR MaLR -7 542 77 897 280 102 18 chr3 36418544 36418819 -181618339 + LTR16C LTR ERVL 77 374 -117 2241 217 62 2 chr3 36418859 36419357 -181617801 - MER74A LTR ERVL -30 528 1 408 219 38 19 chr3 36419361 36419466 -181617692 + LTR16C LTR ERVL 381 487 -4 270 329 0 0 chr3 36419675 36419754 -181617404 - MER63 DNA MER1_type -5 1055 977 577 156 138 0 chr3 36419756 36419865 -181617293 - MER63 DNA MER1_type -312 750 1 243 340 93 47 chr3 36419901 36420051 -181617107 - MIR3 SINE MIR -11 197 41 2298 111 0 3 chr3 36420914 36421221 -181615937 - AluSq SINE Alu -2 311 6 278 224 0 0 chr3 36421264 36421322 -181615836 + MLT1A1 LTR MaLR 1 58 -307 1468 176 0 30 chr3 36421460 36421727 -181615431 - AluJb SINE Alu -53 259 1 1892 106 92 13 chr3 36421727 36422030 -181615128 + Tigger7 DNA MER2_type 2161 2487 0 1650 191 35 60 chr3 36422049 36422500 -181614658 - LTR56 LTR ERV1 0 445 6 204 135 0 0 chr3 36423328 36423365 -181613793 + (TGG)n Simple_repeat Simple_repeat 2 38 0 2087 122 34 0 chr3 36423643 36423938 -181613220 + AluSx SINE Alu 1 305 -7 908 209 33 19 chr3 36424684 36424895 -181612263 - MER20 DNA MER1_type -5 214 1 2165 113 7 7 chr3 36424999 36425300 -181611858 - AluSp SINE Alu -1 312 12 230 338 86 13 chr3 36426212 36426363 -181610795 + MER5B DNA MER1_type 1 162 -16 574 267 41 0 chr3 36426422 36426594 -181610564 - MIR SINE MIR -16 246 68 909 256 65 31 chr3 36428023 36428259 -181608899 - MER102b DNA MER1_type -1096 332 81 1408 180 113 11 chr3 36428259 36428423 -181608735 - AluJo SINE Alu 0 312 166 360 0 0 0 chr3 36428423 36428463 -181608695 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1408 180 113 11 chr3 36428463 36428581 -181608577 - AluJo SINE Alu -146 166 1 909 256 65 31 chr3 36428581 36428665 -181608493 - MER102b DNA MER1_type -1347 81 1 2014 123 3 3 chr3 36428681 36428966 -181608192 - AluSx SINE Alu -20 292 8 552 341 19 0 chr3 36429246 36429451 -181607707 - MIR SINE MIR -26 236 28 2278 108 0 0 chr3 36429494 36429789 -181607369 + AluSc SINE Alu 1 295 -14 1557 183 60 7 chr3 36429996 36430281 -181606877 + AluJo SINE Alu 1 300 -12 775 186 21 0 chr3 36431085 36431225 -181605933 + AluJo SINE Alu 40 182 -130 5926 42 16 0 chr3 36432127 36432881 -181604277 - L1PA5 LINE L1 -7 6147 5382 517 256 0 30 chr3 36433144 36433277 -181603881 + L2 LINE L2 3185 3313 0 523 291 18 9 chr3 36433737 36433900 -181603258 - MIR SINE MIR -46 162 3 21 57 0 0 chr3 36435678 36435713 -181601445 + AT_rich Low_complexity Low_complexity 1 35 0 572 329 70 3 chr3 36435933 36436231 -181600927 + L2 LINE L2 2284 2601 -713 2129 113 40 0 chr3 36437288 36437588 -181599570 + AluSp SINE Alu 2 313 0 225 183 84 84 chr3 36437688 36437759 -181599399 - L3 LINE CR1 -257 1320 1250 256 79 0 0 chr3 36439035 36439073 -181598085 + L1ME4a LINE L1 5971 6008 -113 216 67 0 0 chr3 36439102 36439132 -181598026 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 443 73 29 0 chr3 36439186 36439254 -181597904 - L1PB4 LINE L1 -3 6153 6084 236 165 76 13 chr3 36439268 36439347 -181597811 + (TATAA)n Simple_repeat Simple_repeat 2 85 0 36 70 0 0 chr3 36440375 36440446 -181596712 + AT_rich Low_complexity Low_complexity 1 71 0 1850 111 55 4 chr3 36440454 36440725 -181596433 - AluSg SINE Alu -25 285 1 2128 67 41 0 chr3 36440728 36441040 -181596118 - AluY SINE Alu 0 323 1 39936 43 26 2 chr3 36441050 36447050 -181590108 - L1PA7 LINE L1 -5 6149 2 234 0 0 0 chr3 36447339 36447365 -181589793 + (T)n Simple_repeat Simple_repeat 1 26 0 730 120 0 0 chr3 36447762 36447879 -181589279 + (CA)n Simple_repeat Simple_repeat 1 117 0 580 300 92 4 chr3 36448307 36448547 -181588611 - MIR SINE MIR 0 262 2 202 211 0 0 chr3 36448752 36448790 -181588368 + (CAATT)n Simple_repeat Simple_repeat 5 42 0 608 285 186 16 chr3 36449401 36449783 -181587375 + LTR16A LTR ERVL 2 448 -2 323 322 49 35 chr3 36449793 36449936 -181587222 - MIR3 SINE MIR -59 149 5 376 306 72 17 chr3 36450188 36450368 -181586790 + L2 LINE L2 3124 3313 0 293 312 33 33 chr3 36451249 36451409 -181585749 + MIR SINE MIR 31 192 -63 1552 163 222 28 chr3 36451481 36451940 -181585218 + LTR10A LTR ERV1 1 548 -61 1459 269 22 59 chr3 36451968 36452478 -181584680 + LTR16C LTR ERVL 1 491 0 261 0 0 0 chr3 36452660 36452703 -181584455 + (CA)n Simple_repeat Simple_repeat 1 72 0 261 0 0 0 chr3 36452703 36452732 -181584426 + (CA)n Simple_repeat Simple_repeat 1 29 0 2390 97 6 0 chr3 36453096 36453407 -181583751 - AluSp SINE Alu 0 313 1 278 356 14 68 chr3 36453641 36453860 -181583298 - MIR SINE MIR -48 214 8 325 280 30 20 chr3 36454486 36454586 -181582572 - L2 LINE L2 -2 3311 3211 310 242 44 21 chr3 36454648 36454817 -181582341 - LTR33A LTR ERVL 0 523 380 738 306 160 22 chr3 36455233 36455904 -181581254 - L2 LINE L2 -215 3057 2298 322 252 10 29 chr3 36456101 36456204 -181580954 + CT-rich Low_complexity Low_complexity 2 102 0 1160 238 75 4 chr3 36456833 36457114 -181580044 - MLT1G1 LTR MaLR -294 301 1 6144 95 6 3 chr3 36457225 36458682 -181578476 - L1PA12 LINE L1 -1 6167 4713 2088 202 37 55 chr3 36459539 36460103 -181577055 - MLT2B3 LTR ERVL 0 554 1 303 284 85 34 chr3 36460227 36460403 -181576755 + L2 LINE L2 3127 3311 -2 259 191 64 11 chr3 36460674 36460768 -181576390 + L1ME4a LINE L1 6023 6121 0 1635 185 24 0 chr3 36460821 36461108 -181576050 - AluJo SINE Alu -16 296 3 802 148 0 63 chr3 36461335 36461477 -181575681 - FLAM_C SINE Alu 0 133 1 25 0 0 0 chr3 36461673 36461698 -181575460 + AT_rich Low_complexity Low_complexity 1 25 0 35 41 0 0 chr3 36462229 36462278 -181574880 + AT_rich Low_complexity Low_complexity 1 49 0 319 305 79 38 chr3 36462380 36462893 -181574265 - L1ME4a LINE L1 -21 6100 5365 1039 278 94 59 chr3 36463052 36463587 -181573571 - L2 LINE L2 -2 3311 2759 199 242 32 16 chr3 36463590 36463652 -181573506 - L2 LINE L2 -661 2653 2591 367 333 101 0 chr3 36464288 36464426 -181572732 + L2 LINE L2 3162 3313 0 995 285 97 8 chr3 36464632 36464993 -181572165 + LTR16C LTR ERVL 99 491 0 251 256 39 26 chr3 36465021 36465099 -181572059 + MIR SINE MIR 165 243 -19 275 346 0 0 chr3 36465910 36465988 -181571170 + L2 LINE L2 3186 3263 -9 296 54 0 0 chr3 36466078 36466115 -181571043 + U2 snRNA snRNA 1 37 -151 186 303 15 15 chr3 36466303 36466369 -181570789 - L2 LINE L2 -3054 260 195 967 57 0 0 chr3 36466778 36466902 -181570256 - L1PB2 LINE L1 -2 6149 6026 379 282 38 0 chr3 36467046 36467177 -181569981 + MIR3 SINE MIR 65 200 -8 342 288 23 23 chr3 36467443 36467575 -181569583 - L1ME4a LINE L1 -1054 5092 4961 281 291 34 34 chr3 36467908 36468056 -181569102 - L1MC/D LINE L1 -2038 5770 5623 795 272 109 27 chr3 36468350 36468681 -181568477 + MLT1J2 LTR MaLR 93 450 0 2608 62 0 0 chr3 36468715 36469021 -181568137 - AluY SINE Alu -5 306 1 306 260 67 29 chr3 36469065 36469169 -181567989 - HAL1b LINE L1 -463 885 778 235 282 88 54 chr3 36469251 36469545 -181567613 - HAL1b LINE L1 -443 905 602 1975 151 24 0 chr3 36469697 36469989 -181567169 + AluJb SINE Alu 4 302 -10 1019 147 0 89 chr3 36470263 36470487 -181566671 - MER2 DNA MER2_type -135 210 7 1626 174 20 30 chr3 36470691 36470989 -181566169 + AluJo SINE Alu 1 295 -17 706 150 8 8 chr3 36472192 36472334 -181564824 + AluJb SINE Alu 173 312 0 289 305 89 28 chr3 36472932 36473105 -181564053 - MIR3 SINE MIR -43 165 6 28 44 0 44 chr3 36473106 36473174 -181563984 + AT_rich Low_complexity Low_complexity 1 65 0 237 268 42 0 chr3 36473293 36473364 -181563794 - MIR SINE MIR -98 164 91 7527 118 158 17 chr3 36474783 36475738 -181561420 - THE1C-int LTR MaLR 0 1580 367 2394 99 0 6 chr3 36475738 36476051 -181561107 - AluY SINE Alu 0 311 1 7527 118 158 17 chr3 36476051 36476479 -181560679 - THE1C-int LTR MaLR -1213 367 1 1438 152 77 88 chr3 36476482 36476858 -181560300 - THE1C LTR MaLR -3 372 1 16014 139 15 6 chr3 36476864 36477554 -181559604 + L1PA11 LINE L1 1644 2326 -3848 1950 139 0 4 chr3 36477554 36477828 -181559330 + AluSx SINE Alu 1 273 -39 228 35 0 0 chr3 36477835 36477864 -181559294 + (CA)n Simple_repeat Simple_repeat 2 30 0 16014 139 15 6 chr3 36477864 36478608 -181558550 + L1PA11 LINE L1 2331 3066 -3108 219 36 0 0 chr3 36478608 36478636 -181558522 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 16014 139 15 6 chr3 36478636 36481312 -181555846 + L1PA11 LINE L1 3066 5795 -379 240 111 0 0 chr3 36481312 36481348 -181555810 + (TA)n Simple_repeat Simple_repeat 2 37 0 16014 139 15 6 chr3 36481348 36481726 -181555432 + L1PA11 LINE L1 5795 6168 -6 632 270 93 31 chr3 36481788 36482014 -181555144 + MIR SINE MIR 23 262 0 180 77 0 0 chr3 36482290 36482316 -181554842 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1519 178 11 21 chr3 36482318 36482599 -181554559 - AluJo SINE Alu -30 282 5 271 77 26 0 chr3 36482758 36482797 -181554361 + MLT1I LTR MaLR 101 140 -269 295 302 164 22 chr3 36483457 36483684 -181553474 - MIR SINE MIR -3 259 3 26 50 0 0 chr3 36483795 36483835 -181553323 + AT_rich Low_complexity Low_complexity 1 40 0 810 200 45 50 chr3 36484276 36484496 -181552662 - MER20 DNA MER1_type 0 219 1 962 176 0 0 chr3 36484547 36484700 -181552458 - FRAM SINE Alu -25 151 1 451 269 107 13 chr3 36485129 36485278 -181551880 - MIR SINE MIR -90 172 10 4485 169 54 35 chr3 36485927 36487209 -181549949 - L1MA8 LINE L1 -11 7240 5936 8490 227 70 33 chr3 36487337 36489151 -181548007 - L1MA8 LINE L1 -1775 5331 3585 1756 202 9 6 chr3 36489151 36489492 -181547666 - MER2 DNA MER2_type 0 344 3 8490 227 70 33 chr3 36489492 36491634 -181545524 - L1MA8 LINE L1 -3521 3585 1525 544 351 134 40 chr3 36491824 36492477 -181544681 - L2 LINE L2 0 3272 2526 390 287 70 0 chr3 36492586 36492701 -181544457 - MIR3 SINE MIR -39 169 47 208 237 0 0 chr3 36493126 36493185 -181543973 + A-rich Low_complexity Low_complexity 1 59 0 458 155 0 107 chr3 36493531 36493634 -181543524 + MER21B LTR ERV1 1 92 -771 760 216 49 6 chr3 36493688 36493850 -181543308 + MER21B LTR ERV1 100 268 -595 1232 57 131 11 chr3 36493854 36493884 -181543274 - MER107 DNA MER1_type 0 197 172 182 36 0 36 chr3 36493884 36493912 -181543246 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1232 57 131 11 chr3 36493912 36494057 -181543101 - MER107 DNA MER1_type -25 172 1 * 1706 233 87 39 chr3 36494057 36494570 -181542588 + MER21B LTR ERV1 275 812 -51 2010 149 0 0 chr3 36494991 36495311 -181541847 + AluSx SINE Alu 1 320 0 277 301 73 24 chr3 36495657 36495780 -181541378 + MER5B DNA MER1_type 2 130 -48 222 44 44 22 chr3 36495788 36495833 -181541325 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 2074 116 0 0 chr3 36495836 36496113 -181541045 - AluSc SINE Alu -32 277 1 207 214 24 0 chr3 36496114 36496156 -181541002 + MER5B DNA MER1_type 116 158 -20 274 200 0 0 chr3 36497559 36497604 -181539554 + MLT1J LTR MaLR 1 45 -466 978 259 17 9 chr3 36497616 36497848 -181539310 + Tigger7 DNA MER2_type 1 234 -2253 455 181 24 24 chr3 36497869 36497952 -181539206 + Tigger7 DNA MER2_type 2409 2491 0 659 240 76 49 chr3 36498017 36498468 -181538690 - LTR48B LTR ERV1 -11 776 128 3848 117 42 8 chr3 36498468 36499082 -181538076 - MER41B LTR ERV1 0 635 1 403 253 0 0 chr3 36499086 36499173 -181537985 - MER34 LTR ERV1 -454 88 2 229 257 68 27 chr3 36499190 36499264 -181537894 - MLT1K LTR MaLR -324 264 188 295 264 114 48 chr3 36499871 36500144 -181537014 + HAL1 LINE L1 2211 2501 -6 1510 268 90 29 chr3 36500222 36500287 -181536871 - HAL1 LINE L1 -710 1797 1737 2194 111 0 10 chr3 36500287 36500594 -181536564 - AluSx SINE Alu -8 304 1 1510 268 90 29 chr3 36500594 36501281 -181535877 - HAL1 LINE L1 -770 1737 999 1311 190 97 0 chr3 36501281 36501528 -181535630 - AluJo SINE Alu -39 273 3 287 253 0 13 chr3 36501582 36501657 -181535501 - HAL1 LINE L1 -2296 211 138 1981 159 83 10 chr3 36501843 36502459 -181534699 + MER39 LTR ERV1 1 705 -2 226 277 36 27 chr3 36502751 36502863 -181534295 + MIR SINE MIR 117 229 -33 409 138 130 29 chr3 36504017 36504155 -181533003 + MER53 DNA DNA 1 152 -37 231 57 0 0 chr3 36504156 36504191 -181532967 + MER53 DNA DNA 105 139 -50 316 299 104 6 chr3 36504524 36504688 -181532470 - L1ME2 LINE L1 -258 5906 5727 272 109 0 18 chr3 36505465 36505520 -181531638 + (TA)n Simple_repeat Simple_repeat 2 55 0 303 237 11 43 chr3 36505527 36505620 -181531538 + L1MC4 LINE L1 6614 6703 -1339 339 144 31 0 chr3 36505627 36505724 -181531434 + (TA)n Simple_repeat Simple_repeat 2 101 0 325 221 0 53 chr3 36505731 36505826 -181531332 + L1MC4 LINE L1 6614 6703 -1339 185 239 0 11 chr3 36505831 36505923 -181531235 + (TA)n Simple_repeat Simple_repeat 1 91 0 567 144 23 11 chr3 36506041 36506215 -181530943 + (TA)n Simple_repeat Simple_repeat 2 177 0 310 256 11 11 chr3 36506222 36506312 -181530846 + L1MC4 LINE L1 6614 6703 -1339 213 152 13 25 chr3 36506315 36506394 -181530764 + (TA)n Simple_repeat Simple_repeat 2 79 0 483 210 54 30 chr3 36506397 36506564 -181530594 + L1ME4a LINE L1 5935 6105 -16 200 33 0 33 chr3 36507074 36507104 -181530054 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 542 180 63 116 chr3 36508344 36508533 -181528625 - MER20 DNA MER1_type 0 219 41 260 227 206 10 chr3 36508557 36508654 -181528504 - MIR SINE MIR -7 255 140 * 308 260 39 39 chr3 36508640 36508744 -181528414 + L2 LINE L2 3133 3236 -36 1963 253 157 1 chr3 36508813 36509542 -181527616 + L2 LINE L2 2460 3306 -7 251 333 30 77 chr3 36509624 36509792 -181527366 + MER5B DNA MER1_type 1 160 -18 2130 123 3 7 chr3 36509969 36510279 -181526879 - AluSx SINE Alu -3 309 1 629 266 125 0 chr3 36510359 36510543 -181526615 + MIR SINE MIR 56 262 0 223 340 66 28 chr3 36510559 36510665 -181526493 + MER5B DNA MER1_type 60 169 -9 200 263 40 40 chr3 36510809 36510885 -181526273 - MIR3 SINE MIR -17 191 116 315 262 19 48 chr3 36510960 36511063 -181526095 + MER5A DNA MER1_type 14 113 -76 445 271 10 0 chr3 36511073 36511169 -181525989 - MER5B DNA MER1_type -3 175 79 214 264 85 47 chr3 36511577 36511683 -181525475 + MIR SINE MIR 107 216 -46 513 311 85 1 chr3 36511736 36511959 -181525199 - MIR SINE MIR -14 248 7 33 25 0 0 chr3 36511989 36512029 -181525129 + AT_rich Low_complexity Low_complexity 1 40 0 291 191 0 0 chr3 36512419 36512482 -181524676 + CT-rich Low_complexity Low_complexity 2 64 0 606 247 29 12 chr3 36512560 36512730 -181524428 - MER5B DNA MER1_type -3 175 3 201 369 162 0 chr3 36513077 36513188 -181523970 + MIR SINE MIR 19 147 -61 456 291 80 6 chr3 36513335 36513510 -181523648 - MER5A DNA MER1_type -1 188 1 4508 245 30 34 chr3 36513871 36516947 -181520211 + L1M4 LINE L1 816 3990 -2654 3331 172 23 23 chr3 36516927 36517148 -181520010 + L1MB5 LINE L1 5510 5730 -444 * 2718 76 3 0 chr3 36517148 36517502 -181519656 - THE1A LTR MaLR 0 355 1 3331 172 23 23 chr3 36517502 36517932 -181519226 + L1MB5 LINE L1 5729 6161 -13 356 251 94 69 chr3 36517951 36518270 -181518888 - L1MC4a LINE L1 -1693 6115 5789 308 202 10 101 chr3 36519217 36519316 -181517842 + L2 LINE L2 3223 3312 -1 257 127 18 0 chr3 36519354 36519410 -181517748 - MLT2C1 LTR ERVL 0 514 357 1565 188 41 16 chr3 36519459 36519779 -181517379 - MLT2C1 LTR ERVL -62 335 8 2224 104 0 10 chr3 36519782 36520079 -181517079 + AluSx SINE Alu 1 294 -18 274 286 0 0 chr3 36520903 36520966 -181516192 - L2 LINE L2 -2 3311 3249 418 325 58 19 chr3 36521920 36522074 -181515084 - MIR SINE MIR -45 217 58 234 0 0 0 chr3 36522940 36522966 -181514192 + (TA)n Simple_repeat Simple_repeat 2 27 0 2283 101 0 0 chr3 36522966 36523264 -181513894 - AluSx SINE Alu -14 298 1 367 297 47 31 chr3 36523740 36523868 -181513290 + L2 LINE L2 3143 3272 0 334 318 12 0 chr3 36523881 36523966 -181513192 + L2 LINE L2 3210 3295 -18 2470 71 3 7 chr3 36524138 36524448 -181512710 - AluSg SINE Alu -1 309 1 227 245 49 20 chr3 36525631 36525733 -181511425 + L1ME4a LINE L1 6011 6115 -6 244 305 48 9 chr3 36525803 36525908 -181511250 - MIR3 SINE MIR -7 201 93 2026 138 12 6 chr3 36526413 36526739 -181510419 - MER2 DNA MER2_type -3 342 15 270 277 59 0 chr3 36526743 36526844 -181510314 - MIR SINE MIR -84 178 72 2088 100 21 0 chr3 36527055 36527345 -181509813 + AluSx SINE Alu 3 298 -14 1508 204 72 49 chr3 36527367 36527755 -181509403 + LTR16A1 LTR ERVL 19 415 -42 664 178 40 35 chr3 36527776 36527950 -181509208 + MER53 DNA DNA 15 189 0 274 196 0 0 chr3 36527956 36528002 -181509156 + LTR16A1 LTR ERVL 412 457 0 1021 256 5 0 chr3 36528489 36528712 -181508446 - MER58A DNA MER1_type 0 224 1 250 188 30 20 chr3 36528992 36529093 -181508065 + (TTA)n Simple_repeat Simple_repeat 2 103 0 2093 140 0 3 chr3 36529250 36529564 -181507594 + AluSq SINE Alu 1 313 0 895 226 83 0 chr3 36530495 36530699 -181506459 - MER58A DNA MER1_type -3 221 1 325 315 14 41 chr3 36530842 36530988 -181506170 + MLT1K LTR MaLR 126 267 -321 275 284 9 28 chr3 36531494 36531603 -181505555 + MLT1K LTR MaLR 400 506 -82 383 200 0 0 chr3 36532700 36532780 -181504378 + MER116 DNA Mariner 1 80 0 238 281 208 73 chr3 36533082 36533260 -181503898 + MIR SINE MIR 56 257 -5 201 121 0 0 chr3 36533272 36533305 -181503853 + (TTA)n Simple_repeat Simple_repeat 1 33 0 522 306 121 10 chr3 36533410 36533609 -181503549 + MIR SINE MIR 20 240 -22 654 242 126 61 chr3 36533801 36534127 -181503031 - L2 LINE L2 0 3313 2967 742 241 16 16 chr3 36534534 36534721 -181502437 - MIR SINE MIR -24 238 52 651 242 8 0 chr3 36534745 36534873 -181502285 - MER5A DNA MER1_type 0 189 61 309 135 0 0 chr3 36534892 36534944 -181502214 - MER41B LTR ERV1 -87 548 497 1221 134 19 29 chr3 36534945 36535154 -181502004 + AluSx SINE Alu 1 207 -105 647 231 61 79 chr3 36535573 36535682 -181501476 + MLT1H LTR MaLR 58 167 -382 2170 114 6 28 chr3 36535682 36535999 -181501159 + AluSq SINE Alu 1 310 -3 647 231 61 79 chr3 36535999 36536118 -181501040 + MLT1H LTR MaLR 167 282 -267 708 268 38 21 chr3 36536483 36536774 -181500384 - MER113 DNA MER1_type? -196 325 30 192 40 0 0 chr3 36537166 36537191 -181499967 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 619 264 5 35 chr3 36537473 36537674 -181499484 - L2 LINE L2 -8 3305 3111 278 67 22 0 chr3 36537695 36537740 -181499418 + (TG)n Simple_repeat Simple_repeat 2 47 0 1805 47 0 5 chr3 36537989 36538204 -181498954 - AluY SINE Alu 0 311 98 317 247 151 38 chr3 36538510 36538696 -181498462 - MLT1F LTR MaLR -66 476 295 293 289 187 18 chr3 36539101 36539267 -181497891 + MIR SINE MIR 20 213 -49 415 268 33 46 chr3 36539350 36539503 -181497655 - MLT1J LTR MaLR -8 503 353 1574 214 21 122 chr3 36539505 36540301 -181496857 - L1MD3 LINE L1 -831 7164 6311 * 1580 213 28 62 chr3 36540297 36541055 -181496103 - L1ME LINE L1 -572 5594 4857 366 196 41 0 chr3 36541135 36541232 -181495926 + MER20B DNA MER1_type 585 685 -98 1343 293 71 31 chr3 36541325 36541468 -181495690 - L2 LINE L2 -512 2802 2666 2315 113 0 0 chr3 36541468 36541770 -181495388 + AluSx SINE Alu 2 303 -9 1343 293 71 31 chr3 36541770 36542175 -181494983 - L2 LINE L2 -648 2666 2232 430 265 56 6 chr3 36542195 36542357 -181494801 - HAL1 LINE L1 -1224 1283 1114 2339 131 15 35 chr3 36542631 36543029 -181494129 + MLT1B LTR MaLR 1 390 0 2281 103 0 34 chr3 36543439 36543759 -181493399 - AluSg SINE Alu 0 310 2 2418 83 0 10 chr3 36543952 36544264 -181492894 - AluSp SINE Alu -4 309 1 21 0 0 0 chr3 36544448 36544469 -181492689 + AT_rich Low_complexity Low_complexity 1 21 0 190 400 0 9 chr3 36544601 36544706 -181492452 - MER5A DNA MER1_type -4 185 82 29 0 0 0 chr3 36544978 36545007 -181492151 + AT_rich Low_complexity Low_complexity 1 29 0 406 343 60 10 chr3 36545870 36546071 -181491087 + MIR SINE MIR 18 228 -34 204 295 107 67 chr3 36546065 36546289 -181490869 - L2 LINE L2 -535 2779 2547 * 2249 107 3 19 chr3 36547098 36547415 -181489743 - AluSx SINE Alu 0 312 1 1077 83 0 0 chr3 36547417 36547549 -181489609 - AluSq/x SINE Alu -180 132 1 807 272 58 9 chr3 36548197 36548421 -181488737 - MIR SINE MIR 0 262 28 354 45 0 0 chr3 36548941 36548985 -181488173 + (TG)n Simple_repeat Simple_repeat 2 45 0 1346 221 103 25 chr3 36549290 36549725 -181487433 + MER20B DNA MER1_type 293 761 -22 207 69 0 0 chr3 36550231 36550260 -181486898 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 21 36 0 0 chr3 36550628 36550656 -181486502 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 36550986 36551014 -181486144 + AT_rich Low_complexity Low_complexity 1 28 0 243 188 21 0 chr3 36551031 36551079 -181486079 + MER91 DNA MER1_type 79 127 -63 28 0 0 0 chr3 36551505 36551533 -181485625 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr3 36553236 36553256 -181483902 + (CAAAAA)n Simple_repeat Simple_repeat 4 23 0 408 378 13 0 chr3 36553518 36553674 -181483484 - MIR3 SINE MIR -13 195 38 264 217 58 14 chr3 36553891 36553960 -181483198 + MIR SINE MIR 179 250 -12 290 135 19 0 chr3 36553963 36554015 -181483143 + L2 LINE L2 3261 3313 0 261 224 144 56 chr3 36554620 36554745 -181482413 + MIR SINE MIR 49 184 -78 693 261 70 60 chr3 36554981 36555265 -181481893 + MLT1J LTR MaLR 223 509 -2 430 279 90 0 chr3 36557091 36557202 -181479956 + L2 LINE L2 3190 3310 -3 669 191 30 15 chr3 36557799 36557930 -181479228 - FLAM_A SINE Alu 0 133 1 231 234 130 0 chr3 36557948 36558025 -181479133 - L1ME LINE L1 -411 5710 5624 423 261 73 26 chr3 36558075 36558376 -181478782 - L1ME LINE L1 -753 5393 5212 27 49 0 0 chr3 36558401 36558442 -181478716 + AT_rich Low_complexity Low_complexity 1 41 0 279 293 32 0 chr3 36558517 36558640 -181478518 - L1ME LINE L1 -1112 5034 4908 1454 211 148 94 chr3 36558687 36559581 -181477577 - LTR1B LTR ERV1 0 1020 3 1803 136 40 22 chr3 36559780 36560103 -181477055 + L1MB2 LINE L1 5750 6078 -93 994 171 39 17 chr3 36560339 36560520 -181476638 - MER20B DNA MER1_type -17 202 18 499 297 19 48 chr3 36561052 36561256 -181475902 - MIR SINE MIR -47 215 15 511 284 60 33 chr3 36562157 36562216 -181474942 + MER5A DNA MER1_type 2 58 -131 2299 119 0 6 chr3 36562216 36562527 -181474631 - AluSx SINE Alu -3 309 1 511 284 60 33 chr3 36562527 36562650 -181474508 + MER5A DNA MER1_type 58 189 0 1350 165 34 49 chr3 36562733 36563061 -181474097 + MER33 DNA MER1_type 2 324 0 863 252 25 41 chr3 36563160 36563402 -181473756 - MIR SINE MIR -6 256 19 806 188 16 172 chr3 36565590 36565776 -181471382 + MLT1E LTR MaLR 1 162 -431 269 175 70 0 chr3 36565756 36565813 -181471345 + MLT1E LTR MaLR 119 179 -414 * 629 244 25 45 chr3 36565901 36566006 -181471152 + LTR16C LTR ERVL 286 387 -104 2017 133 128 13 chr3 36566006 36566390 -181470768 + MSTA LTR MaLR 1 428 0 629 244 25 45 chr3 36566390 36566485 -181470673 + LTR16C LTR ERVL 387 482 -9 670 157 0 90 chr3 36568216 36568350 -181468808 + MER7A DNA MER2_type 1 120 -226 281 306 92 13 chr3 36568972 36569156 -181468002 + MIR3 SINE MIR 3 207 -55 41 66 0 0 chr3 36569166 36569242 -181467916 + AT_rich Low_complexity Low_complexity 1 76 0 1425 141 14 0 chr3 36569384 36569597 -181467561 - Tigger3(Golem) DNA MER2_type 0 3029 2814 244 361 8 33 chr3 36570040 36570162 -181466996 - MIR3 SINE MIR -76 132 14 505 248 29 0 chr3 36570244 36570349 -181466809 + MER81 DNA DNA 3 110 -4 531 226 92 6 chr3 36570371 36570535 -181466623 + MER5B DNA MER1_type 1 178 0 300 27 0 0 chr3 36570649 36570686 -181466472 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 7750 23 0 3 chr3 36570939 36572013 -181465145 - L1PA3 LINE L1 0 6155 5083 378 0 0 0 chr3 36572948 36572990 -181464168 + (TG)n Simple_repeat Simple_repeat 2 43 0 276 322 50 0 chr3 36573377 36573498 -181463660 + LTR67 LTR ERVL 380 506 -51 201 245 0 0 chr3 36573539 36573588 -181463570 + A-rich Low_complexity Low_complexity 2 50 0 202 282 254 9 chr3 36574884 36574994 -181462164 + MIR SINE MIR 6 142 -120 575 151 84 0 chr3 36575835 36575954 -181461204 - L1MA9 LINE L1 -38 6274 6146 201 234 78 31 chr3 36576050 36576114 -181461044 - MER5A DNA MER1_type 0 189 123 11029 176 21 50 chr3 36576341 36581331 -181455827 - L1M1 LINE L1 -744 6821 1685 1921 144 0 21 chr3 36581331 36581615 -181455543 + AluSq SINE Alu 1 278 -35 333 0 0 0 chr3 36581616 36581653 -181455505 + (TC)n Simple_repeat Simple_repeat 2 38 0 225 0 0 0 chr3 36581652 36581677 -181455481 + (TG)n Simple_repeat Simple_repeat 2 26 0 * 11029 176 21 50 chr3 36581653 36582833 -181454325 - L1M1 LINE L1 -5879 1686 321 319 153 0 0 chr3 36582833 36582892 -181454266 + Alu SINE Alu 241 299 -2 1977 113 62 0 chr3 36583170 36583462 -181453696 + AluSx SINE Alu 1 310 -2 947 302 127 36 chr3 36583466 36584494 -181452664 + HAL1 LINE L1 1063 2183 -324 1830 144 56 3 chr3 36584672 36584957 -181452201 + AluSq SINE Alu 1 300 -13 487 266 58 44 chr3 36584958 36585232 -181451926 + L1MC/D LINE L1 3079 3356 -2790 752 45 99 13 chr3 36585533 36585756 -181451402 + CT-rich Low_complexity Low_complexity 1 242 0 615 171 11 48 chr3 36585771 36585958 -181451200 + CT-rich Low_complexity Low_complexity 1 180 0 1466 206 40 0 chr3 36585958 36586254 -181450904 - AluJo SINE Alu -4 308 1 342 259 120 120 chr3 36586416 36586876 -181450282 + L1MC/D LINE L1 3986 4445 -1701 246 244 52 17 chr3 36586918 36587033 -181450125 + L1MC/D LINE L1 4478 4596 -1550 688 264 68 55 chr3 36587052 36587362 -181449796 + L2 LINE L2 2984 3297 -16 22 35 0 0 chr3 36587495 36587524 -181449634 + AT_rich Low_complexity Low_complexity 1 29 0 6686 150 24 2 chr3 36587654 36589607 -181447551 - L1PA11 LINE L1 -2 6172 4186 227 299 32 19 chr3 36589609 36589766 -181447392 + L1MC/D LINE L1 4678 4836 -1310 182 221 88 15 chr3 36590609 36590677 -181446481 + L3 LINE CR1 1380 1452 -125 2333 133 42 28 chr3 36590701 36591128 -181446030 - L1MC1 LINE L1 0 6333 5901 223 284 0 68 chr3 36591149 36591237 -181445921 + MIR SINE MIR 67 148 -114 905 206 22 0 chr3 36591614 36591798 -181445360 + MLT1B LTR MaLR 1 188 -202 311 196 0 0 chr3 36591798 36591854 -181445304 + MLT1B LTR MaLR 333 388 -2 235 330 123 9 chr3 36591898 36592004 -181445154 - MIR SINE MIR -10 252 135 507 274 157 7 chr3 36592536 36592689 -181444469 - MER5A DNA MER1_type -5 184 9 382 316 85 37 chr3 36592770 36593042 -181444116 + L1MC/D LINE L1 5392 5676 -2132 1750 133 43 7 chr3 36593232 36593532 -181443626 - AluSx SINE Alu -1 311 1 749 234 23 0 chr3 36594072 36594247 -181442911 + MLT1B LTR MaLR 10 188 -202 311 196 0 0 chr3 36594247 36594303 -181442855 + MLT1B LTR MaLR 333 388 -2 241 321 123 9 chr3 36594347 36594453 -181442705 - MIR SINE MIR -10 252 135 507 274 157 7 chr3 36594985 36595138 -181442020 - MER5A DNA MER1_type -5 184 9 382 316 85 37 chr3 36595219 36595491 -181441667 + L1MC/D LINE L1 5392 5676 -2132 2086 115 30 0 chr3 36595681 36595976 -181441182 - AluSx SINE Alu -8 304 1 276 111 0 0 chr3 36596398 36596443 -181440715 + (TC)n Simple_repeat Simple_repeat 1 45 0 237 215 11 32 chr3 36596444 36596530 -181440628 + (TA)n Simple_repeat Simple_repeat 1 86 -5 303 28 0 0 chr3 36596530 36596566 -181440592 + (CA)n Simple_repeat Simple_repeat 1 36 0 237 215 11 32 chr3 36596566 36596572 -181440586 + (TA)n Simple_repeat Simple_repeat 86 91 0 189 0 0 0 chr3 36597539 36597560 -181439598 + (A)n Simple_repeat Simple_repeat 1 21 0 2264 107 0 10 chr3 36599981 36600281 -181436877 - AluSx SINE Alu -15 297 1 248 302 0 0 chr3 36600322 36600385 -181436773 - L2 LINE L2 -5 3308 3246 645 278 222 10 chr3 36600483 36600771 -181436387 + L2 LINE L2 2500 2848 -466 295 124 360 11 chr3 36600771 36600860 -181436298 + MER39 LTR ERV1 1 120 -587 * 1408 144 29 47 chr3 36600845 36601082 -181436076 + MER39 LTR ERV1 264 497 -210 2036 116 7 7 chr3 36601082 36601375 -181435783 - AluSq SINE Alu -20 293 1 1408 144 29 47 chr3 36601375 36601415 -181435743 + MER39 LTR ERV1 497 536 -171 1011 123 0 12 chr3 36601464 36601626 -181435532 + MER39 LTR ERV1 544 703 -4 583 342 74 0 chr3 36601631 36601821 -181435337 + L2 LINE L2 2851 3054 -259 216 204 0 0 chr3 36601921 36601965 -181435193 + T-rich Low_complexity Low_complexity 1 44 0 1606 115 26 43 chr3 36602004 36602308 -181434850 - AluSg SINE Alu -11 299 1 22 35 0 0 chr3 36602309 36602338 -181434820 + AT_rich Low_complexity Low_complexity 1 29 0 243 128 0 0 chr3 36602344 36602386 -181434772 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1739 139 14 0 chr3 36602386 36602673 -181434485 - AluSp SINE Alu -21 292 2 819 128 0 0 chr3 36602673 36602814 -181434344 + (TATTG)n Simple_repeat Simple_repeat 1 141 0 233 236 0 0 chr3 36602820 36602875 -181434283 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 1156 260 84 34 chr3 36606268 36606296 -181430862 + L2 LINE L2 2757 2782 -531 1586 119 153 4 chr3 36606296 36606417 -181430741 + AluSx SINE Alu 1 103 -209 228 67 0 0 chr3 36606417 36606447 -181430711 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1586 119 153 4 chr3 36606447 36606593 -181430565 + AluSx SINE Alu 103 308 -4 1156 260 84 34 chr3 36606593 36607101 -181430057 + L2 LINE L2 2782 3312 -1 348 286 114 29 chr3 36607243 36607383 -181429775 + L2 LINE L2 3162 3313 0 189 0 0 0 chr3 36607549 36607570 -181429588 + (TA)n Simple_repeat Simple_repeat 2 22 0 279 302 0 0 chr3 36609081 36609197 -181427961 + C-rich Low_complexity Low_complexity 1 116 0 4541 204 27 33 chr3 36609889 36611825 -181425333 - L1MD1 LINE L1 -22 6220 4300 197 306 0 0 chr3 36613070 36613119 -181424039 + L2 LINE L2 3265 3313 0 446 141 24 0 chr3 36613586 36613667 -181423491 + MSTA LTR MaLR 1 83 -345 2165 111 9 15 chr3 36613667 36614009 -181423149 + THE1A LTR MaLR 1 340 -15 1950 150 32 3 chr3 36614007 36614346 -181422812 + MSTA LTR MaLR 80 428 0 * 398 229 175 66 chr3 36614732 36614915 -181422243 + MIR SINE MIR 31 233 -29 251 318 24 0 chr3 36614928 36615013 -181422145 + MIR SINE MIR 104 190 -72 284 224 17 0 chr3 36616446 36616504 -181420654 - L2 LINE L2 0 3272 3214 405 102 0 0 chr3 36616510 36616569 -181420589 + (TGGA)n Simple_repeat Simple_repeat 3 61 0 21 0 0 0 chr3 36616678 36616699 -181420459 + AT_rich Low_complexity Low_complexity 1 21 0 252 0 0 0 chr3 36617166 36617194 -181419964 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 2008 151 12 54 chr3 36618114 36618519 -181418639 + MLT1B LTR MaLR 1 388 -2 2055 234 141 37 chr3 36619351 36620335 -181416823 - MER97c DNA MER1_type? -3 1087 1 25 65 0 0 chr3 36620595 36620641 -181416517 + AT_rich Low_complexity Low_complexity 1 46 0 21 36 0 0 chr3 36620680 36620708 -181416450 + AT_rich Low_complexity Low_complexity 1 28 0 719 231 40 71 chr3 36620716 36621040 -181416118 + L1ME3A LINE L1 5848 6161 -9 190 212 91 30 chr3 36621131 36621197 -181415961 + L2 LINE L2 1771 1840 -1474 270 322 119 0 chr3 36621905 36622023 -181415135 - MIR SINE MIR 0 262 131 506 264 40 79 chr3 36624962 36625189 -181411969 - L2 LINE L2 0 3313 3096 449 324 23 7 chr3 36627457 36627605 -181409553 + MIR3 SINE MIR 48 199 -9 23 0 0 0 chr3 36627914 36627937 -181409221 + AT_rich Low_complexity Low_complexity 1 23 0 14380 35 0 0 chr3 36628105 36630611 -181406547 - L1PA3 LINE L1 0 6155 3649 188 206 0 0 chr3 36631596 36631630 -181405528 - MIR SINE MIR -121 87 54 500 265 20 0 chr3 36631652 36631754 -181405404 + MER5A DNA MER1_type 10 113 -76 205 191 0 24 chr3 36632441 36632483 -181404675 + CT-rich Low_complexity Low_complexity 4 44 0 3740 127 82 27 chr3 36633518 36634187 -181402971 + MER50 LTR ERV1 6 711 -23 930 191 0 6 chr3 36634289 36634457 -181402701 + AluJo SINE Alu 1 167 -145 2946 176 0 47 chr3 36635014 36635519 -181401639 + MLT2B3 LTR ERVL 3 479 -75 2140 186 49 7 chr3 36635519 36635928 -181401230 - MSTA LTR MaLR 0 428 3 2946 176 0 47 chr3 36635928 36636001 -181401157 + MLT2B3 LTR ERVL 479 554 0 2282 120 0 0 chr3 36636064 36636372 -181400786 + AluSg SINE Alu 3 310 0 2364 189 36 18 chr3 36636445 36636822 -181400336 + MLT1D LTR MaLR 1 391 -114 2258 183 5 0 chr3 36636822 36637221 -181399937 - MER57A LTR ERV1 0 403 3 2364 189 36 18 chr3 36637221 36637339 -181399819 + MLT1D LTR MaLR 391 505 0 2285 100 3 28 chr3 36637561 36637881 -181399277 + AluSx SINE Alu 1 312 0 381 249 86 32 chr3 36637930 36638151 -181399007 + MER46C DNA MER2_type 26 258 -80 2032 128 7 7 chr3 36639078 36639407 -181397751 + AluSc SINE Alu 1 309 0 2041 118 3 17 chr3 36639520 36639833 -181397325 - AluSq SINE Alu 0 309 1 2133 171 8 3 chr3 36640994 36641357 -181395801 + MLT1A1 LTR MaLR 1 365 0 348 293 78 9 chr3 36641406 36641522 -181395636 + L2 LINE L2 3188 3311 -2 199 0 65 0 chr3 36641583 36641614 -181395544 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1299 236 28 38 chr3 36641616 36642043 -181395115 + HAL1 LINE L1 1374 1796 -711 336 299 85 29 chr3 36642124 36642465 -181394693 + HAL1 LINE L1 1903 2262 -245 1566 143 36 8 chr3 36642569 36642821 -181394337 + AluSx SINE Alu 47 305 -7 1448 105 4 116 chr3 36644284 36644611 -181392547 - AluSc SINE Alu 0 330 35 253 270 0 0 chr3 36644612 36644679 -181392479 - MIR SINE MIR -57 151 84 308 261 118 59 chr3 36644750 36644869 -181392289 - L2 LINE L2 0 3272 3147 384 369 38 0 chr3 36644915 36645072 -181392086 - L2 LINE L2 -437 2877 2715 255 319 11 11 chr3 36645989 36646080 -181391078 + GA-rich Low_complexity Low_complexity 2 92 0 216 338 0 0 chr3 36646610 36646684 -181390474 + MIR SINE MIR 186 259 -3 431 289 19 19 chr3 36646784 36646940 -181390218 - MIR3 SINE MIR -23 185 30 324 228 16 25 chr3 36647290 36647419 -181389739 - L1MC4 LINE L1 -1339 6983 1986 422 338 9 45 chr3 36647478 36647700 -181389458 - L2 LINE L2 -2 3311 3098 462 252 127 20 chr3 36648031 36648235 -181388923 - MIR SINE MIR -25 237 5 885 203 32 46 chr3 36648782 36648999 -181388159 + MER20 DNA MER1_type 1 214 -5 2983 235 70 20 chr3 36649157 36649938 -181387220 + L1MC4a LINE L1 2 883 -5657 315 273 22 14 chr3 36649945 36650084 -181387074 + L1MC4a LINE L1 5422 5561 -979 402 288 7 7 chr3 36650520 36650659 -181386499 - MER117 DNA MER1_type -35 162 24 270 299 110 26 chr3 36651338 36651492 -181385666 + MIR SINE MIR 53 219 -43 1984 255 91 22 chr3 36651699 36651772 -181385386 + L1MC4a LINE L1 5696 5763 -2439 180 0 0 0 chr3 36651772 36651792 -181385366 + (TA)n Simple_repeat Simple_repeat 1 20 0 1984 255 91 22 chr3 36651792 36652530 -181384628 + L1MC4a LINE L1 5763 6563 -1639 359 252 16 57 chr3 36652774 36652897 -181384261 + MER5B DNA MER1_type 71 177 -1 662 277 57 94 chr3 36652954 36653304 -181383854 + L2 LINE L2 2189 2525 -789 1394 175 4 0 chr3 36653421 36653689 -181383469 + L1MA9 LINE L1 6033 6301 -11 1110 286 54 37 chr3 36653805 36654563 -181382595 + L2 LINE L2 2550 3313 0 2437 134 52 45 chr3 36654674 36654986 -181382172 - L1MA9 LINE L1 0 6312 6004 2446 87 14 14 chr3 36654986 36655341 -181381817 + THE1A LTR MaLR 1 355 0 11500 94 15 10 chr3 36655342 36656587 -181380571 + THE1A-int LTR MaLR 2 1259 -321 1926 142 28 3 chr3 36656587 36656869 -181380289 - AluSg SINE Alu -21 289 1 11500 94 15 10 chr3 36656869 36657193 -181379965 + THE1A-int LTR MaLR 1259 1580 0 2180 149 6 8 chr3 36657193 36657549 -181379609 + THE1A LTR MaLR 1 355 0 2437 134 52 45 chr3 36657549 36657749 -181379409 - L1MA9 LINE L1 -307 6005 5793 207 69 0 0 chr3 36657749 36657778 -181379380 + (CA)n Simple_repeat Simple_repeat 2 30 0 255 215 19 9 chr3 36657786 36657893 -181379265 + (TA)n Simple_repeat Simple_repeat 1 108 0 2336 148 48 48 chr3 36657893 36658880 -181378278 - L1MA9 LINE L1 -518 5773 4789 247 273 0 0 chr3 36658880 36658946 -181378212 + L1 LINE L1 4350 4415 -1731 418 163 33 0 chr3 36659260 36659352 -181377806 + T-rich Low_complexity Low_complexity 4 98 0 1761 167 0 4 chr3 36659375 36659651 -181377507 - AluSq SINE Alu -38 275 1 869 222 58 0 chr3 36660687 36660894 -181376264 + MER20 DNA MER1_type 1 219 0 1463 249 83 30 chr3 36661790 36662332 -181374826 - MLT1E2 LTR MaLR 0 626 75 2170 96 10 3 chr3 36662332 36662624 -181374534 + AluY SINE Alu 3 296 -15 1463 249 83 30 chr3 36662624 36662704 -181374454 - MLT1E2 LTR MaLR -551 75 1 1594 181 73 27 chr3 36662709 36663079 -181374079 + MLT1B LTR MaLR 1 387 -3 2851 120 31 5 chr3 36663450 36663867 -181373291 + MSTA LTR MaLR 1 428 0 9271 153 34 16 chr3 36663868 36665489 -181371669 + MSTA-int LTR MaLR 2 1651 0 2623 141 29 7 chr3 36665489 36665908 -181371250 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr3 36666223 36666244 -181370914 + AT_rich Low_complexity Low_complexity 1 21 0 270 160 0 0 chr3 36667404 36667454 -181369704 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 837 236 198 0 chr3 36668844 36669056 -181368102 - MIR SINE MIR -1 261 8 342 0 0 0 chr3 36669101 36669139 -181368019 + (TG)n Simple_repeat Simple_repeat 2 39 0 2299 121 0 0 chr3 36669574 36669943 -181367215 - AluSq SINE Alu 0 369 1 271 379 26 0 chr3 36670833 36670949 -181366209 + L2 LINE L2 3153 3271 -1 193 200 0 0 chr3 36671275 36671310 -181365848 + MIR SINE MIR 109 143 -65 2178 152 0 0 chr3 36672207 36672517 -181364641 + AluSx SINE Alu 1 310 -2 321 282 106 17 chr3 36672637 36672820 -181364338 + L1MC/D LINE L1 2290 2527 -3901 265 327 25 35 chr3 36672865 36673067 -181364091 + L1MC/D LINE L1 5560 5759 -2285 22 0 0 0 chr3 36673410 36673432 -181363726 + AT_rich Low_complexity Low_complexity 1 22 0 5157 260 60 45 chr3 36674682 36675801 -181361357 + L1ME1 LINE L1 1093 2194 -4370 5127 142 23 5 chr3 36675801 36677155 -181360003 - L1PA16 LINE L1 -10 6156 4774 5157 260 60 45 chr3 36677155 36678564 -181358594 + L1ME1 LINE L1 2194 3580 -2984 542 267 118 20 chr3 36678564 36678759 -181358399 - MER58C DNA MER1_type 0 215 2 5157 260 60 45 chr3 36678759 36679350 -181357808 + L1ME1 LINE L1 3580 4161 -2403 2311 86 3 7 chr3 36679350 36679654 -181357504 + AluY SINE Alu 1 303 -8 5157 260 60 45 chr3 36679654 36680916 -181356242 + L1ME1 LINE L1 4161 5766 -798 585 141 0 0 chr3 36680918 36681003 -181356155 + AluJb SINE Alu 31 115 -197 621 173 8 0 chr3 36681017 36681144 -181356014 + L1ME1 LINE L1 5764 5891 -693 291 231 0 15 chr3 36681185 36681250 -181355908 + L1ME1 LINE L1 5986 6049 -533 261 109 0 0 chr3 36681250 36681296 -181355862 + (CA)n Simple_repeat Simple_repeat 2 47 0 1229 215 25 41 chr3 36681332 36681700 -181355458 + L1ME1 LINE L1 6137 6498 -86 2190 108 3 0 chr3 36682928 36683225 -181353933 + AluSx SINE Alu 1 298 -14 23 33 0 0 chr3 36683322 36683352 -181353806 + AT_rich Low_complexity Low_complexity 1 30 0 419 250 66 13 chr3 36683792 36683944 -181353214 + MER103 DNA DNA 7 166 0 704 159 0 0 chr3 36684540 36684647 -181352511 + FLAM_C SINE Alu 12 118 -25 186 43 0 0 chr3 36684652 36684675 -181352483 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2284 113 3 3 chr3 36684823 36685133 -181352025 + AluSg SINE Alu 1 310 0 215 305 0 24 chr3 36685690 36685772 -181351386 + MIR SINE MIR 172 251 -11 198 191 0 0 chr3 36685788 36685830 -181351328 + (CTA)n Simple_repeat Simple_repeat 1 42 0 417 263 134 53 chr3 36685897 36686068 -181351090 + MER5A DNA MER1_type 4 188 -1 272 297 0 0 chr3 36686279 36686353 -181350805 + L2 LINE L2 2290 2363 -951 409 288 34 17 chr3 36686358 36686572 -181350586 - LTR16A1 LTR ERVL 0 457 279 442 295 154 6 chr3 36686585 36686741 -181350417 + MER5A DNA MER1_type 11 189 0 264 296 22 84 chr3 36686773 36686952 -181350206 - LTR16C LTR ERVL -242 249 82 218 234 21 0 chr3 36687555 36687602 -181349556 + L2 LINE L2 3264 3311 -2 549 51 0 0 chr3 36687918 36687996 -181349162 - L1PA2 LINE L1 0 6155 6078 188 119 0 24 chr3 36688262 36688304 -181348854 + (TC)n Simple_repeat Simple_repeat 2 42 0 360 296 73 59 chr3 36689011 36689182 -181347976 - MIR SINE MIR 0 262 89 465 303 78 7 chr3 36689182 36689324 -181347834 + MIR SINE MIR 2 153 -109 1055 141 0 0 chr3 36689328 36689505 -181347653 - MER6A DNA MER2_type 0 605 429 6838 79 6 0 chr3 36689505 36690663 -181346495 + L1P3 LINE L1 4364 5529 -625 40774 35 24 2 chr3 36690666 36696199 -181340959 + L1P1 LINE L1 2 5657 -498 849 86 0 0 chr3 36696428 36696544 -181340614 - L1PA8 LINE L1 -2 6170 6055 1953 177 11 6 chr3 36696544 36696905 -181340253 - MER6A DNA MER2_type -172 433 71 226 208 226 0 chr3 36696928 36696981 -181340177 + MIR SINE MIR 154 218 -44 1521 254 116 0 chr3 36697354 36697839 -181339319 + MLT1H LTR MaLR 1 541 -8 420 359 67 36 chr3 36698900 36699494 -181337664 - L2 LINE L2 -1 3271 2664 2119 123 3 3 chr3 36699683 36699984 -181337174 - AluSx SINE Alu -11 301 1 306 268 12 12 chr3 36699992 36700074 -181337084 + MER5A DNA MER1_type 56 137 -52 1150 199 71 22 chr3 36700475 36700797 -181336361 + MER58B DNA MER1_type 4 341 0 22 0 0 0 chr3 36700896 36700918 -181336240 + AT_rich Low_complexity Low_complexity 1 22 0 189 267 0 0 chr3 36702030 36702075 -181335083 - L2 LINE L2 -2 3311 3267 273 217 36 24 chr3 36702146 36702229 -181334929 - MLT1J2 LTR MaLR -21 429 346 382 235 26 17 chr3 36702326 36702441 -181334717 - MLT1J2 LTR MaLR -334 116 1 302 222 44 11 chr3 36702675 36702765 -181334393 - MIR SINE MIR -66 196 104 673 224 92 9 chr3 36703166 36703394 -181333764 + L1ME3A LINE L1 5422 5668 -496 234 0 0 0 chr3 36703399 36703425 -181333733 + (CA)n Simple_repeat Simple_repeat 1 26 0 1972 199 24 49 chr3 36703436 36703968 -181333190 - Charlie1b DNA MER1_type -4 519 1 357 335 106 13 chr3 36704016 36704252 -181332906 + L1ME3A LINE L1 5683 5940 -230 1490 40 0 0 chr3 36705359 36705536 -181331622 - L1PA3 LINE L1 -3 6152 5976 1217 198 115 54 chr3 36705779 36706152 -181331006 + MSTD LTR MaLR 1 396 0 279 261 35 70 chr3 36707031 36707146 -181330012 + MLT1H LTR MaLR 65 205 -344 417 154 5 0 chr3 36707537 36707625 -181329533 + MLT1H1 LTR MaLR 482 555 0 2143 121 0 0 chr3 36710041 36710373 -181326785 - AluSx SINE Alu 0 332 1 892 203 158 0 chr3 36710562 36710803 -181326355 - LTR16C LTR ERVL 0 491 213 207 365 20 54 chr3 36711206 36711354 -181325804 + L2 LINE L2 2909 3051 -221 455 293 110 10 chr3 36711617 36711824 -181325334 + MIR SINE MIR 20 246 -16 706 237 57 34 chr3 36711942 36712119 -181325039 - MER5A DNA MER1_type -3 186 6 704 223 13 25 chr3 36712157 36712314 -181324844 - MER5B DNA MER1_type -18 160 6 589 208 164 19 chr3 36712348 36712507 -181324651 + MER5A DNA MER1_type 8 189 0 252 252 431 8 chr3 36713437 36713560 -181323598 + MER5A DNA MER1_type 9 183 -6 248 224 41 0 chr3 36713574 36713623 -181323535 + MER5B DNA MER1_type 1 51 -127 292 143 0 0 chr3 36713773 36713815 -181323343 - 5S rRNA rRNA -79 42 1 24 0 0 0 chr3 36714147 36714171 -181322987 + AT_rich Low_complexity Low_complexity 1 24 0 670 224 107 24 chr3 36714498 36714703 -181322455 - MER58A DNA MER1_type -1 223 2 315 325 124 0 chr3 36716052 36716221 -181320937 - MIR SINE MIR -65 197 8 276 149 0 0 chr3 36716623 36716670 -181320488 - MER94 DNA DNA -77 57 11 189 250 83 0 chr3 36718821 36718869 -181318289 + MIR SINE MIR 45 96 -112 222 299 0 0 chr3 36718989 36719056 -181318102 - L2 LINE L2 -1358 1956 1890 255 31 0 0 chr3 36719661 36719693 -181317465 + (CA)n Simple_repeat Simple_repeat 2 33 0 21 71 0 0 chr3 36719699 36719741 -181317417 + AT_rich Low_complexity Low_complexity 1 42 0 250 143 32 32 chr3 36719923 36719986 -181317172 + CT-rich Low_complexity Low_complexity 2 64 0 280 306 63 9 chr3 36720262 36720373 -181316785 - MIR SINE MIR -65 197 81 405 58 0 0 chr3 36720559 36720611 -181316547 + (TG)n Simple_repeat Simple_repeat 2 53 0 250 200 100 0 chr3 36720611 36720671 -181316487 - MER112 DNA MER1_type -194 66 1 1886 173 61 6 chr3 36720867 36721213 -181315945 + MLT1A1 LTR MaLR 1 365 0 213 121 0 0 chr3 36722063 36722096 -181315062 + (GA)n Simple_repeat Simple_repeat 2 34 0 1815 148 50 28 chr3 36722178 36722535 -181314623 + MLT1A1 LTR MaLR 1 365 0 278 281 183 18 chr3 36722975 36723139 -181314019 + MLT1H1 LTR MaLR 48 241 -349 1674 141 30 7 chr3 36723170 36723475 -181313683 - L1MC3 LINE L1 -149 7636 7325 824 201 47 23 chr3 36723471 36724058 -181313100 - L1M4b LINE L1 -1137 5820 4941 * 3412 141 60 43 chr3 36724059 36724074 -181313084 - LTR8A LTR ERV1 0 727 714 3999 88 18 0 chr3 36724074 36724617 -181312541 + MER41A LTR ERV1 2 554 0 3412 141 60 43 chr3 36724617 36725316 -181311842 - LTR8A LTR ERV1 -13 714 1 5146 243 28 55 chr3 36725316 36725772 -181311386 - L1M4b LINE L1 -2014 4943 4476 3037 57 5 3 chr3 36725772 36726157 -181311001 - L1PA6 LINE L1 -3 6151 5766 5146 243 28 55 chr3 36726157 36726236 -181310922 - L1M4b LINE L1 -2481 4476 4396 2125 156 0 3 chr3 36726236 36726544 -181310614 - AluJb SINE Alu -2 310 4 5146 243 28 55 chr3 36726544 36728220 -181308938 - L1M4b LINE L1 -2561 4396 2858 1549 69 15 0 chr3 36728220 36728424 -181308734 - L1PA5 LINE L1 -3 6151 5945 5146 243 28 55 chr3 36728424 36728801 -181308357 - L1M4b LINE L1 -4099 2858 2473 2299 216 62 33 chr3 36729026 36729213 -181307945 - L1M4b LINE L1 -4633 2326 2146 2149 186 14 30 chr3 36729213 36729415 -181307743 + Tigger2a DNA MER2_type 1 205 -2503 2184 137 0 0 chr3 36729415 36729721 -181307437 - AluSx SINE Alu -6 306 1 2149 186 14 30 chr3 36729721 36729959 -181307199 + Tigger2a DNA MER2_type 205 434 0 2299 216 62 33 chr3 36729959 36730803 -181306355 - L1M4b LINE L1 -4813 2146 1259 214 50 50 0 chr3 36730803 36730843 -181306315 + (TTTG)n Simple_repeat Simple_repeat 4 45 0 2299 216 62 33 chr3 36730843 36731034 -181306124 - L1M4b LINE L1 -5700 1259 1075 249 407 34 0 chr3 36731604 36731722 -181305436 - L2 LINE L2 -6 3266 3145 303 302 38 9 chr3 36732342 36732448 -181304710 + MIR SINE MIR 102 210 -52 197 302 47 47 chr3 36732944 36733050 -181304108 + L2 LINE L2 3145 3250 -22 275 284 138 28 chr3 36733188 36733297 -181303861 - L2 LINE L2 0 3313 3193 44 20 0 0 chr3 36735016 36735067 -181302091 + AT_rich Low_complexity Low_complexity 1 51 0 24 67 0 0 chr3 36736409 36736454 -181300704 + AT_rich Low_complexity Low_complexity 1 45 0 222 118 0 0 chr3 36736505 36736539 -181300619 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 6496 115 81 14 chr3 36736599 36737720 -181299438 + Tigger3b DNA MER2_type 2 1197 -34 296 368 26 0 chr3 36738772 36738886 -181298272 - L2 LINE L2 0 3313 3197 772 243 116 45 chr3 36739028 36739451 -181297707 + MLT1L LTR MaLR 59 615 0 234 222 69 14 chr3 36740022 36740094 -181297064 + L1M4c LINE L1 2423 2498 -3886 2056 128 3 7 chr3 36740147 36740443 -181296715 + AluSq SINE Alu 1 295 -18 1193 210 33 47 chr3 36741088 36741364 -181295794 - MSTD LTR MaLR 0 396 125 735 335 70 20 chr3 36742000 36742102 -181295056 - LTR16A LTR ERVL 0 450 355 1441 229 41 33 chr3 36742102 36742495 -181294663 - MSTD LTR MaLR 0 396 1 735 335 70 20 chr3 36742495 36742735 -181294423 - LTR16A LTR ERVL -95 355 91 1067 312 31 48 chr3 36742736 36742948 -181294210 - HERV16 LTR ERVL -2369 2627 2413 1115 186 9 23 chr3 36742948 36743169 -181293989 - MER20 DNA MER1_type -1 218 1 1067 312 31 48 chr3 36743169 36743437 -181293721 - HERV16 LTR ERVL -2583 2413 2155 1976 49 0 8 chr3 36743550 36743794 -181293364 + AluY SINE Alu 66 307 -4 363 193 0 0 chr3 36743795 36743852 -181293306 - MER58 DNA MER1_type -2168 252 196 1719 212 3 8 chr3 36743863 36744226 -181292932 - L1PB4 LINE L1 -4 6152 5790 351 113 0 0 chr3 36744226 36744279 -181292879 + (TA)n Simple_repeat Simple_repeat 1 53 0 1719 212 3 8 chr3 36744279 36744297 -181292861 - L1PB4 LINE L1 -366 5790 5773 1762 150 19 28 chr3 36744297 36744822 -181292336 - L1PB4 LINE L1 -744 5402 5023 198 323 73 89 chr3 36745071 36745319 -181291839 + L2 LINE L2 2512 2755 -559 1438 317 135 33 chr3 36745957 36747118 -181290040 - L2 LINE L2 -246 3067 1793 346 259 266 6 chr3 36747987 36748145 -181289013 - L3 LINE CR1 -2 1575 1377 198 259 0 62 chr3 36748742 36748823 -181288335 + MIR SINE MIR 79 154 -108 2201 119 0 3 chr3 36749505 36749815 -181287343 - AluSg SINE Alu -1 309 1 918 290 37 53 chr3 36749830 36750206 -181286952 - MLT1J1 LTR MaLR -8 438 69 1573 238 70 79 chr3 36751273 36751560 -181285598 + MER20B DNA MER1_type 8 296 -487 224 29 0 29 chr3 36751560 36751594 -181285564 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 666 198 0 0 chr3 36751598 36751714 -181285444 - FLAM_C SINE Alu -17 116 1 1573 238 70 79 chr3 36751714 36752051 -181285107 + MER20B DNA MER1_type 299 631 -152 26 0 0 0 chr3 36752722 36752748 -181284410 + AT_rich Low_complexity Low_complexity 1 26 0 420 298 131 5 chr3 36752991 36753182 -181283976 - LTR33 LTR ERVL -1 520 306 254 319 60 26 chr3 36753243 36753359 -181283799 - LTR33A LTR ERVL -331 192 73 300 272 0 25 chr3 36753681 36753762 -181283396 - L2 LINE L2 -5 3308 3230 269 286 16 0 chr3 36753849 36753912 -181283246 + MLT1K LTR MaLR 141 204 -384 194 237 246 70 chr3 36754200 36754314 -181282844 - MER5A DNA MER1_type -1 188 55 37 62 0 0 chr3 36754637 36754702 -181282456 + AT_rich Low_complexity Low_complexity 1 65 0 493 220 70 85 chr3 36755008 36755208 -181281950 - L2 LINE L2 -10 3303 3107 969 167 30 0 chr3 36755244 36755412 -181281746 + FRAM SINE Alu 1 171 -5 184 0 62 31 chr3 36755831 36755863 -181281295 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 2058 111 7 0 chr3 36757021 36757300 -181279858 + AluY SINE Alu 1 281 -30 306 0 0 0 chr3 36757321 36757355 -181279803 + (TA)n Simple_repeat Simple_repeat 2 35 0 315 326 83 10 chr3 36757355 36757656 -181279502 + L1M4 LINE L1 2484 2806 -3340 319 353 22 7 chr3 36757724 36757863 -181279295 - MIR3 SINE MIR -1 207 67 354 314 89 26 chr3 36757880 36758071 -181279087 + MIR SINE MIR 14 216 -46 1448 203 178 51 chr3 36758748 36759220 -181277938 - MLT1H LTR MaLR -16 533 2 2239 127 3 29 chr3 36759342 36759688 -181277470 + MER1B DNA MER1_type 1 337 0 34 0 0 0 chr3 36760398 36760432 -181276726 + AT_rich Low_complexity Low_complexity 1 34 0 517 56 14 0 chr3 36760432 36760503 -181276655 - L1PA16 LINE L1 -9 6157 6086 3696 99 2 25 chr3 36760674 36761238 -181275920 + L1PB1 LINE L1 5600 6150 -1 21 0 0 0 chr3 36761238 36761259 -181275899 + AT_rich Low_complexity Low_complexity 1 21 0 256 65 87 22 chr3 36762704 36762750 -181274408 - MADE1 DNA Mariner -4 76 28 420 111 0 0 chr3 36762774 36762837 -181274321 + (TA)n Simple_repeat Simple_repeat 2 64 0 21 57 0 0 chr3 36763179 36763214 -181273944 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr3 36763279 36763301 -181273857 + AT_rich Low_complexity Low_complexity 1 22 0 261 219 57 19 chr3 36763355 36763460 -181273698 + L1MC/D LINE L1 5213 5321 -825 296 300 67 36 chr3 36763550 36763803 -181273355 + L1MC/D LINE L1 5469 5729 -392 341 254 363 7 chr3 36763859 36764073 -181273085 - MLT1G LTR MaLR 0 590 453 1782 166 169 5 chr3 36764073 36764441 -181272717 - MSTA LTR MaLR 0 428 1 341 254 363 7 chr3 36764441 36764521 -181272637 - MLT1G LTR MaLR -137 453 191 230 231 0 0 chr3 36764792 36764844 -181272314 + L1MC/D LINE L1 5860 5911 -1897 11792 175 9 20 chr3 36764965 36767327 -181269831 + L1PA12 LINE L1 1459 4586 -2998 453 132 0 0 chr3 36767327 36767389 -181269769 + L1PA8 LINE L1 6092 6159 -13 2242 110 3 0 chr3 36767450 36767749 -181269409 + AluSx SINE Alu 5 304 -8 301 304 99 35 chr3 36767934 36768105 -181269053 - MLT1J2 LTR MaLR -2 448 267 358 254 19 1 chr3 36768157 36768268 -181268890 - MLT1J2 LTR MaLR -232 177 68 874 249 9 28 chr3 36768523 36768736 -181268422 - MER63A DNA MER1_type 0 210 2 285 345 58 14 chr3 36768880 36769019 -181268139 + MIR3 SINE MIR 37 181 -27 631 254 142 45 chr3 36769334 36769734 -181267424 - MLT1H1 LTR MaLR 0 555 69 516 266 61 41 chr3 36770204 36770697 -181266461 + L1ME LINE L1 5149 5639 -523 285 198 81 99 chr3 36770945 36771056 -181266102 + MER70A LTR ERVL 342 450 -22 260 294 0 0 chr3 36771128 36771196 -181265962 + MLT1J LTR MaLR 94 161 -350 226 318 65 0 chr3 36771165 36771272 -181265886 + MLT1L LTR MaLR 195 308 -307 * 324 347 25 16 chr3 36771565 36771686 -181265472 - MIR SINE MIR -100 162 41 371 395 65 19 chr3 36771706 36771967 -181265191 - L3 LINE CR1 -375 1202 930 1797 179 0 0 chr3 36771973 36772275 -181264883 + AluJo SINE Alu 1 302 -10 488 257 52 29 chr3 36772510 36772646 -181264512 + L2 LINE L2 3175 3313 0 560 336 89 0 chr3 36774385 36774656 -181262502 + L1MC/D LINE L1 5522 5816 -1992 26 0 0 0 chr3 36774873 36774899 -181262259 + AT_rich Low_complexity Low_complexity 1 26 0 409 204 9 18 chr3 36776219 36776332 -181260826 + (TATATG)n Simple_repeat Simple_repeat 5 116 0 282 259 60 65 chr3 36776477 36776662 -181260496 - HAL1 LINE L1 -1 2506 2323 1395 264 105 61 chr3 36776762 36777718 -181259440 - HAL1 LINE L1 -1063 1444 424 295 321 171 7 chr3 36778339 36778479 -181258679 - MIR SINE MIR -72 190 28 229 296 169 35 chr3 36779235 36779407 -181257751 - L2 LINE L2 -4 3309 3115 843 278 71 42 chr3 36779722 36780147 -181257011 - L2 LINE L2 -73 3240 2804 287 327 65 28 chr3 36780251 36780358 -181256800 - L2 LINE L2 -514 2800 2690 10516 52 3 1 chr3 36780358 36781696 -181255462 - L1PA5 LINE L1 -3295 2851 1511 * 11204 45 1 5 chr3 36781683 36783099 -181254059 + L1PA5 LINE L1 2819 4228 -1918 4557 58 5 3 chr3 36783100 36783674 -181253484 + L1PA5 LINE L1 5580 6154 0 235 371 0 11 chr3 36783800 36783889 -181253269 - L3 LINE CR1 -1 1576 1489 267 297 57 27 chr3 36783966 36784108 -181253050 + MIR SINE MIR 3 146 -62 2689 139 21 38 chr3 36784427 36784902 -181252256 - MLT1C LTR MaLR 0 467 1 964 261 138 54 chr3 36785376 36785766 -181251392 + LTR16C LTR ERVL 1 423 -68 212 59 29 0 chr3 36785922 36785956 -181251202 + (TA)n Simple_repeat Simple_repeat 2 36 0 26 50 0 0 chr3 36786185 36786225 -181250933 + AT_rich Low_complexity Low_complexity 1 40 0 308 299 40 84 chr3 36786238 36786489 -181250669 + L1MC4a LINE L1 5822 6061 -1747 1940 139 10 7 chr3 36786844 36787132 -181250026 + AluSx SINE Alu 1 289 -23 243 0 0 0 chr3 36787135 36787162 -181249996 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 758 228 14 7 chr3 36787897 36788042 -181249116 + FRAM SINE Alu 1 146 -30 198 0 0 0 chr3 36788043 36788065 -181249093 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2099 137 42 33 chr3 36788273 36788632 -181248526 + THE1B LTR MaLR 1 362 -2 1046 206 35 27 chr3 36788706 36789184 -181247974 - L1ME3 LINE L1 -1 6161 5567 1791 262 74 32 chr3 36789385 36789885 -181247273 - MLT1G1 LTR MaLR -2 593 73 419 252 79 109 chr3 36789933 36790051 -181247107 - MLT1H1-int LTR MaLR -19 1352 1232 1337 217 85 14 chr3 36790051 36790238 -181246920 - MLT1B LTR MaLR 0 390 218 195 42 0 0 chr3 36790238 36790262 -181246896 + (GA)n Simple_repeat Simple_repeat 2 25 0 1337 217 85 14 chr3 36790262 36790438 -181246720 - MLT1B LTR MaLR -172 218 1 419 252 79 109 chr3 36790438 36790648 -181246510 - MLT1H1-int LTR MaLR -139 1232 1034 250 270 19 120 chr3 36791265 36791524 -181245634 - MLT1H1-int LTR MaLR -827 544 312 327 234 116 33 chr3 36791548 36791704 -181245454 - MLT1H1-int LTR MaLR -1269 102 11 1935 241 41 19 chr3 36791706 36792174 -181244984 - MLT1H1 LTR MaLR -12 543 66 376 272 147 0 chr3 36792348 36792484 -181244674 + MIR SINE MIR 80 235 -27 12096 200 34 31 chr3 36792643 36793670 -181243488 - L1 LINE L1 -1088 5240 4217 1933 126 0 7 chr3 36793670 36793978 -181243180 - AluSg SINE Alu 0 306 1 12096 200 34 31 chr3 36793978 36796803 -181240355 - L1 LINE L1 -2111 4217 1362 1573 98 18 0 chr3 36796795 36797020 -181240138 - L1MA4 LINE L1 -338 5962 5734 * 1177 114 6 0 chr3 36797022 36797188 -181239970 - THE1C LTR MaLR 0 375 209 5443 186 31 8 chr3 36797210 36798387 -181238771 - L1 LINE L1 -1416 4730 3527 637 219 52 66 chr3 36798402 36798690 -181238468 + L1M1 LINE L1 3017 3300 -4265 683 185 144 0 chr3 36798696 36798869 -181238289 - L1 LINE L1 -4065 1263 1066 1511 202 20 17 chr3 36798870 36799167 -181237991 - L1 LINE L1 -5021 307 10 1265 108 19 47 chr3 36799229 36799441 -181237717 + Tigger2a DNA MER2_type 2 207 -227 610 204 0 61 chr3 36799441 36799573 -181237585 - FLAM_A SINE Alu -18 124 1 1126 150 15 104 chr3 36799575 36799639 -181237519 + Tigger2a DNA MER2_type 208 276 -2442 2422 74 3 6 chr3 36799639 36799950 -181237208 + AluY SINE Alu 2 311 0 1126 150 15 104 chr3 36799950 36800145 -181237013 + Tigger2a DNA MER2_type 276 444 0 388 288 116 20 chr3 36800408 36800554 -181236604 - L2 LINE L2 -4 3268 3109 1648 201 55 80 chr3 36801666 36802353 -181234805 - L1MC5 LINE L1 -54 7907 7238 1076 241 56 56 chr3 36802488 36803120 -181234038 - L1MC5 LINE L1 -897 6911 6324 204 253 11 21 chr3 36803127 36803222 -181233936 + (TA)n Simple_repeat Simple_repeat 1 94 0 320 306 91 27 chr3 36803247 36803433 -181233725 - L1MC4a LINE L1 -1544 6264 6067 227 196 22 0 chr3 36803507 36803553 -181233605 - L1MC4a LINE L1 -1871 5937 5891 30 59 0 0 chr3 36803627 36803678 -181233480 + AT_rich Low_complexity Low_complexity 1 51 0 930 260 31 0 chr3 36803806 36804033 -181233125 - MIR SINE MIR -16 246 13 323 290 0 41 chr3 36804081 36804226 -181232932 - L1MC4a LINE L1 -392 5729 5591 518 176 128 39 chr3 36804299 36804451 -181232707 - L1ME1 LINE L1 0 6334 6011 223 285 219 7 chr3 36804953 36805090 -181232068 - MIR3 SINE MIR -4 204 39 29 28 0 0 chr3 36805600 36805636 -181231522 + AT_rich Low_complexity Low_complexity 1 36 0 715 287 55 0 chr3 36805776 36805978 -181231180 + MIR SINE MIR 1 213 -49 35 71 0 0 chr3 36808259 36808329 -181228829 + AT_rich Low_complexity Low_complexity 1 70 0 1908 138 24 17 chr3 36808533 36808830 -181228328 - AluSx SINE Alu -9 303 5 330 339 34 0 chr3 36809480 36809598 -181227560 - L2 LINE L2 -1 3312 3191 21 0 0 0 chr3 36809600 36809621 -181227537 + AT_rich Low_complexity Low_complexity 1 21 0 1314 307 65 5 chr3 36809982 36810431 -181226727 + L2 LINE L2 2838 3313 0 1174 196 31 68 chr3 36811038 36811364 -181225794 + L1MD2 LINE L1 6036 6349 -10 594 213 104 6 chr3 36812148 36812331 -181224827 + L1MD3 LINE L1 7795 7995 0 454 328 33 83 chr3 36812474 36812715 -181224443 - MIR SINE MIR -14 248 20 2742 135 19 12 chr3 36812769 36813251 -181223907 - L1MA5 LINE L1 -2 6298 5814 1674 224 66 68 chr3 36814156 36814790 -181222368 - L1MC4 LINE L1 -6 8036 7404 1031 218 9 5 chr3 36814797 36815013 -181222145 + L1MC4a LINE L1 7082 7298 -510 199 304 107 9 chr3 36815552 36815664 -181221494 - L2 LINE L2 -9 3304 3182 425 299 64 19 chr3 36815842 36815999 -181221159 - MIR SINE MIR -11 251 88 242 348 36 54 chr3 36816070 36816294 -181220864 - L2 LINE L2 -551 2763 2544 2098 219 52 11 chr3 36816673 36817138 -181220020 + LTR40a LTR ERVL 33 516 -3 2795 143 19 25 chr3 36817936 36818302 -181218856 - L1MC2 LINE L1 -3 6341 5977 2901 9 0 0 chr3 36818302 36818617 -181218541 - AluYb8 SINE Alu -3 315 1 2795 143 19 25 chr3 36818617 36818769 -181218389 - L1MC2 LINE L1 -367 5977 5826 2134 105 18 0 chr3 36818769 36819071 -181218087 - AluSx SINE Alu 0 307 1 279 0 0 0 chr3 36819071 36819102 -181218056 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 1142 171 63 0 chr3 36819107 36819312 -181217846 - L1MC2 LINE L1 -578 5755 5538 198 0 0 0 chr3 36819370 36819392 -181217766 + (TG)n Simple_repeat Simple_repeat 2 23 0 1492 191 144 49 chr3 36819451 36819896 -181217262 + MLT1D LTR MaLR 1 487 -18 2567 167 31 29 chr3 36820002 36820524 -181216634 + L1MB7 LINE L1 5655 6177 -7 692 323 58 15 chr3 36820808 36821133 -181216025 - MLT1I LTR MaLR -66 343 5 1584 216 116 15 chr3 36821134 36821592 -181215566 + MLT1D LTR MaLR 2 505 0 202 170 57 19 chr3 36822226 36822279 -181214879 + MIR3 SINE MIR 116 170 -38 365 111 32 0 chr3 36822419 36822482 -181214676 + CT-rich Low_complexity Low_complexity 4 68 0 1396 165 28 35 chr3 36822482 36822737 -181214421 - AluJo SINE Alu -59 253 1 1511 252 74 19 chr3 36822998 36823749 -181213409 + L2 LINE L2 2517 3313 0 201 74 0 0 chr3 36823758 36823785 -181213373 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 1638 182 0 4 chr3 36823791 36824066 -181213092 - AluJo SINE Alu -38 274 1 579 244 145 16 chr3 36824076 36824269 -181212889 - MLT1L LTR MaLR -56 559 342 361 288 18 27 chr3 36824284 36824395 -181212763 - L2 LINE L2 -2 3311 3202 1548 193 0 0 chr3 36824398 36824657 -181212501 - AluJb SINE Alu -53 259 1 249 226 155 24 chr3 36824657 36824741 -181212417 - MLT1L LTR MaLR -316 299 205 2152 113 0 3 chr3 36825904 36826188 -181210970 + AluSx SINE Alu 13 295 -17 207 308 64 13 chr3 36826189 36826267 -181210891 + MIR SINE MIR 49 130 -78 543 249 81 11 chr3 36827076 36827261 -181209897 + Charlie8 DNA MER1_type 78 275 -2142 333 238 45 104 chr3 36827734 36828003 -181209155 + MER112 DNA MER1_type 1 253 -3 16001 129 39 23 chr3 36828295 36828710 -181208448 + Tigger2 DNA MER2_type 13 420 -2298 1993 118 82 28 chr3 36828710 36829066 -181208092 - THE1C LTR MaLR 0 375 1 16001 129 39 23 chr3 36829066 36829571 -181207587 + Tigger2 DNA MER2_type 420 915 -1803 1558 211 20 3 chr3 36829571 36829869 -181207289 + AluJb SINE Alu 1 303 -9 16001 129 39 23 chr3 36829869 36831609 -181205549 + Tigger2 DNA MER2_type 915 2718 0 732 277 176 44 chr3 36831655 36832182 -181204976 + MLT1L LTR MaLR 19 615 0 274 322 26 9 chr3 36832430 36832545 -181204613 - L2 LINE L2 -5 3267 3151 269 194 81 16 chr3 36833630 36833692 -181203466 - L2 LINE L2 0 3313 3248 2063 129 0 20 chr3 36833926 36834229 -181202929 + AluSx SINE Alu 1 297 -15 2414 109 3 0 chr3 36834844 36835156 -181202002 + AluSp SINE Alu 1 313 0 654 298 11 6 chr3 36836106 36836287 -181200871 + LTR33 LTR ERVL 3 184 -337 1642 229 72 15 chr3 36836311 36836769 -181200389 - Charlie1b DNA MER1_type -19 504 21 934 229 105 31 chr3 36836786 36837044 -181200114 + LTR33 LTR ERVL 194 470 -51 2303 248 38 23 chr3 36837061 36837637 -181199521 + MLT1E LTR MaLR 2 586 -7 1561 236 86 162 chr3 36837930 36838921 -181198237 - L2 LINE L2 0 3313 2297 958 188 14 81 chr3 36838921 36839144 -181198014 - MER20 DNA MER1_type -11 208 1 1561 236 86 162 chr3 36839144 36839817 -181197341 - L2 LINE L2 -1016 2297 1574 815 255 11 16 chr3 36840032 36840304 -181196854 + LTR16C LTR ERVL 187 491 0 348 152 229 0 chr3 36840921 36841026 -181196132 - MIR SINE MIR -2 260 132 5249 107 160 126 chr3 36841090 36842644 -181194514 - pTR5 LTR ERV1 0 2438 375 1986 97 4 11 chr3 36842658 36842926 -181194232 - AluSc SINE Alu 0 309 44 297 314 55 90 chr3 36842974 36843167 -181193991 + L2 LINE L2 2770 2968 -304 2123 195 108 0 chr3 36843167 36843623 -181193535 + MLT1D LTR MaLR 1 505 0 297 314 55 90 chr3 36843623 36843946 -181193212 + L2 LINE L2 2968 3270 -2 6792 143 3 12 chr3 36844077 36845122 -181192036 + L1P3 LINE L1 1 1035 -4840 418 209 109 18 chr3 36895149 36895259 -181141899 + L2 LINE L2 3193 3312 -1 26 50 0 0 chr3 36895514 36895554 -181141604 + AT_rich Low_complexity Low_complexity 1 40 0 418 296 70 0 chr3 36895690 36895805 -181141353 - MIR SINE MIR -124 138 16 354 45 0 0 chr3 36896515 36896559 -181140599 + (CA)n Simple_repeat Simple_repeat 2 45 0 3738 217 28 13 chr3 36897166 36898095 -181139063 + L1 LINE L1 3233 4175 -1971 1442 207 58 5 chr3 36898522 36898904 -181138254 + L1 LINE L1 4160 4561 -1585 1869 168 3 0 chr3 36898905 36899202 -181137956 + AluSx SINE Alu 1 298 -14 991 235 14 0 chr3 36899310 36899527 -181137631 + MLT-int LTR MaLR 517 736 -999 347 259 176 0 chr3 36899612 36899743 -181137415 - HsTC2 DNA Tc2 -1742 156 3 1755 189 3 6 chr3 36899957 36900269 -181136889 - AluJo SINE Alu 0 312 2 205 289 105 0 chr3 36900590 36900666 -181136492 - L2 LINE L2 0 3272 3189 * 219 246 123 0 chr3 36900663 36900728 -181136430 - MIR SINE MIR -98 164 92 22 0 0 0 chr3 36900836 36900858 -181136300 + AT_rich Low_complexity Low_complexity 1 22 0 2905 76 0 13 chr3 36902313 36902693 -181134465 + THE1C LTR MaLR 1 375 0 2012 159 39 29 chr3 36902819 36903203 -181133955 + MLT1B LTR MaLR 3 390 0 1773 146 23 32 chr3 36903490 36903798 -181133360 - THE1C LTR MaLR 0 375 71 28398 81 16 3 chr3 36903980 36908315 -181128843 - HERVL-A2 LTR ERVL -1217 4437 1 360 71 0 36 chr3 36908315 36908371 -181128787 - MLT2A2 LTR ERVL 0 453 400 185 62 0 31 chr3 36908376 36908408 -181128750 + (TA)n Simple_repeat Simple_repeat 2 32 0 3312 196 50 13 chr3 36908458 36909847 -181127311 + L1M4c LINE L1 1910 3345 -3037 5577 145 19 18 chr3 36909968 36910913 -181126245 - L1M4c LINE L1 -5421 963 18 32 57 0 0 chr3 36911245 36911298 -181125860 + AT_rich Low_complexity Low_complexity 1 53 0 495 229 0 37 chr3 36912284 36912393 -181124765 + AluJo SINE Alu 118 222 -90 246 62 0 0 chr3 36912401 36912433 -181124725 + (A)n Simple_repeat Simple_repeat 1 32 0 2363 80 0 3 chr3 36912957 36913269 -181123889 + AluY SINE Alu 1 311 0 255 319 79 65 chr3 36914876 36914959 -181122199 - MIR SINE MIR -32 230 150 2197 104 37 0 chr3 36914959 36915258 -181121900 - AluSx SINE Alu -2 310 1 255 319 79 65 chr3 36915258 36915390 -181121768 - MIR SINE MIR -112 150 12 197 297 126 63 chr3 36915406 36915581 -181121577 + L3 LINE CR1 1303 1488 -89 270 56 0 0 chr3 36915614 36915650 -181121508 + (TG)n Simple_repeat Simple_repeat 2 37 0 184 333 115 11 chr3 36915690 36915777 -181121381 + MIR SINE MIR 49 144 -64 573 56 9 130 chr3 36915877 36915985 -181121173 - MSTA LTR MaLR -333 95 1 10560 111 10 31 chr3 36915985 36917597 -181119561 - THE1C-int LTR MaLR 0 1580 3 2182 147 5 36 chr3 36917599 36917986 -181119172 - THE1C LTR MaLR 0 375 1 22 35 0 0 chr3 36918922 36918951 -181118207 + AT_rich Low_complexity Low_complexity 1 29 0 198 71 0 0 chr3 36920446 36920474 -181116684 + (TA)n Simple_repeat Simple_repeat 1 28 0 2145 110 3 0 chr3 36920475 36920766 -181116392 - AluSp SINE Alu -21 292 1 2305 168 3 8 chr3 36921887 36922275 -181114883 - MLT1B LTR MaLR -3 387 2 5299 174 31 28 chr3 36922488 36923722 -181113436 + L1MC1 LINE L1 5095 6332 -1 387 0 0 0 chr3 36923873 36923916 -181113242 + (CA)n Simple_repeat Simple_repeat 2 44 0 1962 247 73 79 chr3 36923944 36924722 -181112436 + L1MDa LINE L1 34 1027 -5513 686 206 49 0 chr3 36924723 36924927 -181112231 + L1MDa LINE L1 1258 1471 -5069 208 268 12 12 chr3 36925123 36925205 -181111953 + A-rich Low_complexity Low_complexity 3 84 0 808 126 7 0 chr3 36925227 36925362 -181111796 + L1PA12 LINE L1 5938 6073 -95 * 2430 41 0 0 chr3 36925350 36925664 -181111494 + L1P LINE L1 2890 3203 -2943 5530 28 18 1 chr3 36925665 36926335 -181110823 - L1PA4 LINE L1 0 6155 5475 180 247 356 0 chr3 36926863 36926936 -181110222 + MIR SINE MIR 2 100 -162 1126 219 129 20 chr3 36927077 36927434 -181109724 - MSTD LTR MaLR 0 396 1 22 0 0 0 chr3 36929212 36929234 -181107924 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 36929923 36929945 -181107213 + AT_rich Low_complexity Low_complexity 1 22 0 284 277 68 68 chr3 36931456 36931604 -181105554 + MIR SINE MIR 40 187 -75 186 118 0 0 chr3 36931972 36932006 -181105152 + (A)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr3 36934366 36934388 -181102770 + AT_rich Low_complexity Low_complexity 1 22 0 33 0 0 0 chr3 36935207 36935240 -181101918 + AT_rich Low_complexity Low_complexity 1 33 0 5256 48 1 18 chr3 36935869 36936575 -181100583 - L1P LINE L1 -2248 3898 3205 14627 21 12 1 chr3 36936581 36939184 -181097974 + L1PA4 LINE L1 3606 6152 -3 630 132 0 0 chr3 36939194 36939300 -181097858 + L1PA13 LINE L1 6055 6160 -3 27 29 0 0 chr3 36939411 36939445 -181097713 + AT_rich Low_complexity Low_complexity 1 34 0 983 238 204 16 chr3 36939712 36940208 -181096950 + L1M4 LINE L1 2660 3248 -2898 777 310 92 4 chr3 36940734 36940973 -181096185 - MIR SINE MIR -1 261 2 24 0 8 0 chr3 36941071 36941132 -181096026 + AT_rich Low_complexity Low_complexity 1 24 0 27 49 0 0 chr3 36941211 36941252 -181095906 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr3 36941518 36941539 -181095619 + AT_rich Low_complexity Low_complexity 1 21 0 667 290 80 51 chr3 36941923 36942471 -181094687 - L1M4 LINE L1 -1995 4151 3588 342 268 55 16 chr3 36942630 36942813 -181094345 - L1M4 LINE L1 -2975 3171 2982 576 258 84 98 chr3 36942901 36943625 -181093533 - L1M4 LINE L1 -3316 2830 2117 2040 132 23 0 chr3 36944039 36944342 -181092816 + AluSx SINE Alu 1 310 -2 768 263 105 13 chr3 36944706 36945010 -181092148 + Charlie7 DNA MER1_type 89 420 -2192 1986 153 36 53 chr3 36945180 36945458 -181091700 - MLT-int LTR MaLR -1331 404 133 2042 118 7 0 chr3 36945458 36945762 -181091396 + AluSq SINE Alu 1 306 0 1986 153 36 53 chr3 36945762 36945893 -181091265 - MLT-int LTR MaLR -1602 133 1 537 128 70 32 chr3 36945914 36946025 -181091133 - MLT1A1 LTR MaLR -263 102 1 * 564 162 126 24 chr3 36946025 36946190 -181090968 + HsTC2 DNA Tc2 1569 1750 -148 12484 213 47 6 chr3 36946196 36950025 -181087133 - L1PB1 LINE L1 -3 6864 2394 2464 65 3 0 chr3 36950025 36950334 -181086824 - AluY SINE Alu -1 310 1 12484 213 47 6 chr3 36950334 36952825 -181084333 - L1PB1 LINE L1 -4473 2394 7 271 222 0 0 chr3 36952825 36952888 -181084270 + HsTC2 DNA Tc2 1739 1801 -97 1411 197 13 39 chr3 36952890 36953199 -181083959 + MLT1A1 LTR MaLR 52 352 -13 21 0 0 0 chr3 36953547 36953568 -181083590 + AT_rich Low_complexity Low_complexity 1 21 0 1979 148 0 0 chr3 36953568 36953859 -181083299 - AluSx SINE Alu -21 291 1 2057 152 0 0 chr3 36954104 36954400 -181082758 - AluSx SINE Alu -16 296 1 276 281 34 34 chr3 36955037 36955126 -181082032 + MIR3 SINE MIR 111 199 -9 8055 188 36 13 chr3 36955205 36957765 -181079393 - L1MA9 LINE L1 -5 6307 3682 182 267 395 0 chr3 36958100 36958186 -181078972 - MIR SINE MIR -19 243 124 405 242 188 31 chr3 36958706 36958929 -181078229 + MER112 DNA MER1_type 2 259 -1 439 148 40 69 chr3 36960359 36960460 -181076698 + MER58B DNA MER1_type 244 341 0 379 130 58 0 chr3 36960832 36960901 -181076257 + AluJ/FRAM SINE Alu 230 302 0 22 80 0 0 chr3 36962080 36962130 -181075028 + AT_rich Low_complexity Low_complexity 1 50 0 26 0 0 0 chr3 36962425 36962451 -181074707 + AT_rich Low_complexity Low_complexity 1 26 0 357 214 126 0 chr3 36962727 36962830 -181074328 + MER103 DNA DNA 5 120 -46 182 281 31 31 chr3 36964002 36964066 -181073092 + L3 LINE CR1 1493 1556 -21 22 70 0 0 chr3 36967292 36967335 -181069823 + AT_rich Low_complexity Low_complexity 1 43 0 2068 116 10 0 chr3 36967960 36968254 -181068904 - AluSq SINE Alu -16 297 1 681 249 71 0 chr3 36969704 36969873 -181067285 + MIR SINE MIR 37 217 -45 206 32 32 0 chr3 36970408 36970439 -181066719 + (CA)n Simple_repeat Simple_repeat 1 32 0 581 320 6 11 chr3 36970552 36970730 -181066428 - MIR SINE MIR -40 222 46 303 280 60 28 chr3 36972024 36972206 -181064952 + MER5A DNA MER1_type 1 188 -1 498 246 262 6 chr3 36972903 36973086 -181064072 - MIR SINE MIR -12 250 21 365 292 99 18 chr3 36973194 36973365 -181063793 - MIR SINE MIR -32 230 46 302 315 116 79 chr3 36974058 36974299 -181062859 - MIR SINE MIR -5 257 8 359 321 106 7 chr3 36974301 36974455 -181062703 - MIR SINE MIR -33 175 1 21 36 0 0 chr3 36975930 36975958 -181061200 + GC_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr3 36977921 36977946 -181059212 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr3 36978024 36978048 -181059110 + AT_rich Low_complexity Low_complexity 1 24 0 369 0 0 0 chr3 36978910 36978951 -181058207 + (CA)n Simple_repeat Simple_repeat 1 41 0 514 276 49 72 chr3 36979028 36979292 -181057866 + Charlie2 DNA MER1_type 1 258 -2524 1699 223 129 43 chr3 36979292 36979685 -181057473 + Charlie2 DNA MER1_type 1856 2214 -648 1869 153 3 3 chr3 36979685 36979980 -181057178 + AluSx SINE Alu 1 295 -17 1699 223 129 43 chr3 36979980 36980331 -181056827 + Charlie2 DNA MER1_type 2214 2664 -198 344 167 45 45 chr3 36980766 36980832 -181056326 - L2 LINE L2 0 3313 3248 13103 53 14 1 chr3 36980950 36982655 -181054503 + L1P LINE L1 3301 5027 -1119 556 245 48 0 chr3 36982757 36982904 -181054254 - L1ME LINE L1 -613 5557 5404 2301 203 35 26 chr3 36982946 36983492 -181053666 - MER74A LTR ERVL -3 555 5 383 267 59 15 chr3 36983568 36983703 -181053455 - L1ME LINE L1 -772 5394 5254 5086 122 50 13 chr3 36983732 36984599 -181052559 - L1PA13 LINE L1 -7 6156 5258 465 170 80 0 chr3 36984645 36984757 -181052401 - L1MB1 LINE L1 -22 6644 6524 * 3014 178 28 14 chr3 36984751 36985792 -181051366 - L1MB1 LINE L1 -348 6318 5269 1027 146 6 12 chr3 36985792 36985963 -181051195 - Tigger4(Zombi) DNA MER2_type -3 2728 2559 345 182 0 0 chr3 36985951 36986017 -181051141 + Tigger4(Zombi) DNA MER2_type 2541 2606 -125 * 604 220 115 11 chr3 36986018 36986200 -181050958 - L1MB1 LINE L1 -1325 5319 5119 269 136 0 0 chr3 36986199 36986243 -181050915 - L1M3 LINE L1 -683 5488 5445 * 320 251 245 10 chr3 36986285 36986411 -181050747 - L1MB1 LINE L1 -3558 3086 2991 2171 86 0 57 chr3 36986411 36986726 -181050432 - AluY SINE Alu -14 297 1 320 251 245 10 chr3 36986726 36986983 -181050175 - L1MB1 LINE L1 -3653 2991 2608 1635 178 80 93 chr3 36989066 36989593 -181047565 - MLT2B1 LTR ERVL 0 520 1 2143 61 14 7 chr3 36989931 36990224 -181046934 - L1PA5 LINE L1 0 6154 5860 6099 193 52 34 chr3 36990346 36991989 -181045169 - L1 LINE L1 -2426 5139 3461 372 43 0 0 chr3 36992466 36992512 -181044646 + (TG)n Simple_repeat Simple_repeat 1 46 0 221 304 38 38 chr3 36993034 36993113 -181044045 + MIR SINE MIR 63 141 -121 428 193 67 52 chr3 36993544 36993679 -181043479 + L1MC4 LINE L1 7745 7881 -161 1975 196 30 25 chr3 36993795 36994193 -181042965 + MLT2D LTR ERVL 7 406 -8 1637 240 71 23 chr3 36994198 36994632 -181042526 + ERVL-D LTR ERVL 2 456 -5308 2468 165 55 8 chr3 36994632 36995524 -181041634 + ERVL-D LTR ERVL 4782 5738 -26 475 267 28 85 chr3 36995525 36995543 -181041615 - L1MB1 LINE L1 -6308 234 217 2026 182 22 27 chr3 36995543 36995956 -181041202 + MLT2D LTR ERVL 1 411 -3 475 267 28 85 chr3 36995956 36996184 -181040974 - L1MB1 LINE L1 -6325 217 2 624 221 0 29 chr3 36996204 36996376 -181040782 + L1MC4 LINE L1 7875 8041 -1 27 0 0 0 chr3 36996498 36996525 -181040633 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr3 36997269 36997294 -181039864 + AT_rich Low_complexity Low_complexity 1 25 0 1157 242 15 74 chr3 36997410 36997803 -181039355 - MLT1A2 LTR MaLR -4 370 1 311 272 34 75 chr3 36997939 36998086 -181039072 + L1M4 LINE L1 3663 3803 -2343 307 206 42 0 chr3 36998715 36998807 -181038351 + L1M4 LINE L1 3855 3950 -2196 1971 122 0 10 chr3 36998950 36999245 -181037913 + AluSx SINE Alu 1 292 -20 490 333 11 6 chr3 36999419 36999596 -181037562 + GA-rich Low_complexity Low_complexity 3 180 0 223 281 0 84 chr3 36999628 36999806 -181037352 + A-rich Low_complexity Low_complexity 2 164 0 228 188 0 0 chr3 36999820 36999852 -181037306 + A-rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr3 36999880 36999904 -181037254 + AT_rich Low_complexity Low_complexity 1 24 0 394 277 28 66 chr3 37000014 37000227 -181036931 - L1MC/D LINE L1 -1991 5817 5613 275 247 144 10 chr3 37000558 37000655 -181036503 + MIR3 SINE MIR 88 197 -11 216 163 0 0 chr3 37000844 37000887 -181036271 + (TA)n Simple_repeat Simple_repeat 1 43 0 306 0 0 0 chr3 37000888 37000922 -181036236 + (TG)n Simple_repeat Simple_repeat 2 35 0 432 325 68 56 chr3 37000931 37001183 -181035975 + MIR SINE MIR 1 255 -7 7344 37 0 3 chr3 37001301 37002413 -181034745 - L1PA7 LINE L1 -2 6152 5040 2230 167 96 5 chr3 37003716 37004165 -181032993 - LTR54B LTR ERV1 -7 491 2 635 177 41 14 chr3 37004194 37004341 -181032817 - L1ME2 LINE L1 0 6164 6014 1480 135 139 8 chr3 37004410 37004662 -181032496 - AluJb SINE Alu -17 295 11 22 0 0 0 chr3 37006490 37006512 -181030646 + AT_rich Low_complexity Low_complexity 1 22 0 1670 178 0 7 chr3 37006564 37006850 -181030308 + AluJb SINE Alu 2 285 -27 22 0 0 0 chr3 37006964 37006986 -181030172 + AT_rich Low_complexity Low_complexity 1 22 0 277 71 71 0 chr3 37008725 37008795 -181028363 + (TA)n Simple_repeat Simple_repeat 2 76 0 642 231 15 0 chr3 37008919 37009053 -181028105 - MER5A DNA MER1_type -1 188 53 267 311 23 45 chr3 37008941 37009073 -181028085 + MER5A DNA MER1_type 35 163 -26 * 452 213 102 0 chr3 37009167 37009294 -181027864 + MLT1D LTR MaLR 1 140 -365 363 241 86 0 chr3 37009300 37009416 -181027742 + MLT1C LTR MaLR 369 464 -3 246 333 36 18 chr3 37009695 37009806 -181027352 - MIR3 SINE MIR -94 114 2 241 164 148 0 chr3 37010138 37010199 -181026959 - AluSc SINE Alu -4 295 226 43 35 0 0 chr3 37010451 37010508 -181026650 + AT_rich Low_complexity Low_complexity 1 57 0 23 33 0 0 chr3 37010707 37010737 -181026421 + AT_rich Low_complexity Low_complexity 1 30 0 479 304 66 61 chr3 37010811 37011173 -181025985 - L1MEd LINE L1 -3314 2815 2452 1156 155 60 20 chr3 37011176 37011536 -181025622 - MSTB1 LTR MaLR 0 432 1 269 287 61 6 chr3 37011568 37011732 -181025426 - L1MEd LINE L1 -3708 2421 2249 1756 147 3 38 chr3 37011732 37012054 -181025104 - AluSx SINE Alu 0 315 4 4112 180 67 10 chr3 37012082 37013472 -181023686 - L1MB7 LINE L1 0 6184 4718 456 273 108 6 chr3 37013475 37013651 -181023507 + MLT1H LTR MaLR 41 234 -315 25 31 0 0 chr3 37015134 37015166 -181021992 + AT_rich Low_complexity Low_complexity 1 32 0 1899 164 0 22 chr3 37015402 37015714 -181021444 - AluSx SINE Alu -7 305 1 645 279 29 39 chr3 37015715 37016027 -181021131 - L1MEd LINE L1 -4916 1203 895 889 231 40 44 chr3 37016123 37016421 -181020737 - L1ME3A LINE L1 0 6170 5874 319 356 63 72 chr3 37016695 37017057 -181020101 - L1MEd LINE L1 -5716 403 45 22 0 0 0 chr3 37019783 37019805 -181017353 + AT_rich Low_complexity Low_complexity 1 22 0 2054 125 7 118 chr3 37020166 37020537 -181016621 + MLT1B LTR MaLR 1 317 -73 2086 125 10 0 chr3 37020537 37020842 -181016316 - AluSp SINE Alu -5 308 1 2054 125 7 118 chr3 37020842 37020909 -181016249 + MLT1B LTR MaLR 317 390 0 1147 182 5 5 chr3 37020929 37021138 -181016020 - AluJo SINE Alu -20 292 84 2132 134 61 3 chr3 37021160 37021502 -181015656 + Tigger2a DNA MER2_type 1 362 -72 922 68 0 31 chr3 37021644 37021806 -181015352 + (TA)n Simple_repeat Simple_repeat 2 158 0 366 386 17 6 chr3 37021871 37022047 -181015111 - L2 LINE L2 -708 2606 2429 531 305 47 30 chr3 37022066 37022299 -181014859 - L2 LINE L2 -1311 2003 1767 2351 69 0 28 chr3 37022441 37022760 -181014398 + AluY SINE Alu 1 310 -1 329 123 0 31 chr3 37022967 37023032 -181014126 - L1MB8 LINE L1 -3 6175 6113 219 370 92 8 chr3 37023863 37023982 -181013176 + L2 LINE L2 3143 3271 -1 325 390 35 0 chr3 37024091 37024291 -181012867 + MIR SINE MIR 46 252 -10 21 0 0 0 chr3 37025016 37025037 -181012121 + AT_rich Low_complexity Low_complexity 1 21 0 954 226 30 13 chr3 37025975 37026209 -181010949 + L1PB3 LINE L1 1251 1488 -5077 * 1722 208 25 53 chr3 37026198 37026549 -181010609 + L1PB3 LINE L1 3060 3419 -4146 4357 100 19 11 chr3 37026549 37027218 -181009940 + L1MA1 LINE L1 5623 6297 -5 1722 208 25 53 chr3 37027218 37027857 -181009301 + L1PB3 LINE L1 3419 4019 -3546 5104 182 27 45 chr3 37027868 37028950 -181008208 + L1PB3 LINE L1 5689 6737 -836 1937 123 3 27 chr3 37028950 37029282 -181007876 + AluSx SINE Alu 1 325 0 5104 182 27 45 chr3 37029282 37030102 -181007056 + L1PB3 LINE L1 6737 7570 -3 280 186 44 9 chr3 37030760 37030873 -181006285 + GA-rich Low_complexity Low_complexity 4 120 0 691 153 5 163 chr3 37030875 37031071 -181006087 + MER31B LTR ERV1 1 165 -301 23 0 0 0 chr3 37031073 37031096 -181006062 + AT_rich Low_complexity Low_complexity 1 23 0 864 199 7 0 chr3 37031106 37031257 -181005901 - FRAM SINE Alu -28 148 1 1153 179 96 4 chr3 37031284 37031535 -181005623 + MER31B LTR ERV1 193 466 0 2199 116 3 0 chr3 37031738 37032039 -181005119 + AluSp SINE Alu 5 306 -7 1135 255 111 25 chr3 37032055 37032451 -181004707 - L1ME3A LINE L1 -33 6137 5708 42587 49 9 3 chr3 37032461 37038023 -180999135 + L1P2 LINE L1 2 5582 -573 796 76 0 0 chr3 37038023 37038120 -180999038 + L1PA2 LINE L1 6050 6154 -1 1985 127 25 3 chr3 37038120 37038434 -180998724 + L1P5 LINE L1 5465 5785 -366 451 152 200 16 chr3 37038459 37038584 -180998574 - L1ME3A LINE L1 -479 5691 5544 24 0 0 0 chr3 37038864 37038888 -180998270 + GC_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr3 37038938 37038964 -180998194 + GC_rich Low_complexity Low_complexity 1 26 0 396 0 0 0 chr3 37038983 37039027 -180998131 + (A)n Simple_repeat Simple_repeat 1 44 0 1878 207 78 2 chr3 37039027 37039501 -180997657 + L1MB3 LINE L1 4549 5058 -1088 2009 165 30 2 chr3 37039507 37039900 -180997258 + L1MB3 LINE L1 5778 6181 -2 344 261 56 53 chr3 37040215 37040343 -180996815 + MER5B DNA MER1_type 60 189 0 443 313 111 29 chr3 37041077 37041320 -180995838 + MLT1I LTR MaLR 1 263 -146 274 302 87 23 chr3 37041444 37041616 -180995542 - MIR SINE MIR -73 189 7 983 249 19 46 chr3 37042346 37042470 -180994688 + MIR SINE MIR 7 133 -129 1984 108 0 37 chr3 37042470 37042790 -180994368 - AluSg SINE Alu 0 309 1 983 249 19 46 chr3 37042790 37042924 -180994234 + MIR SINE MIR 133 260 -2 300 27 0 0 chr3 37043994 37044031 -180993127 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2594 23 7 0 chr3 37044034 37044338 -180992820 - AluY SINE Alu -5 306 1 10792 142 10 1 chr3 37044664 37047265 -180989893 - L1PA11 LINE L1 -1 6173 3553 402 128 0 26 chr3 37048057 37048135 -180989023 - L1MB2 LINE L1 -7 6164 6089 679 246 96 5 chr3 37048334 37048533 -180988625 + MIR SINE MIR 12 228 -34 333 290 129 0 chr3 37048721 37048814 -180988344 - MIR SINE MIR -139 123 19 213 116 70 0 chr3 37049167 37049210 -180987948 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 2377 87 0 0 chr3 37049283 37049594 -180987564 + AluY SINE Alu 1 311 0 506 268 112 32 chr3 37051832 37052082 -180985076 - L2 LINE L2 0 3313 3044 219 288 88 0 chr3 37052069 37052149 -180985009 - L3b LINE CR1 -137 1446 1360 * 37 0 0 0 chr3 37053622 37053659 -180983499 + AT_rich Low_complexity Low_complexity 1 37 0 826 191 14 0 chr3 37053895 37054042 -180983116 + FRAM SINE Alu 8 156 -20 365 183 0 20 chr3 37054042 37054195 -180982963 + GA-rich Low_complexity Low_complexity 1 150 0 27 29 0 0 chr3 37054310 37054344 -180982814 + AT_rich Low_complexity Low_complexity 1 34 0 292 267 64 85 chr3 37055797 37056042 -180981116 + L1MC/D LINE L1 4099 4348 -1798 3024 146 2 18 chr3 37056042 37056550 -180980608 + L1PA15 LINE L1 5665 6164 -1 292 267 64 85 chr3 37056550 37056712 -180980446 + L1MC/D LINE L1 4348 4495 -1651 2114 134 3 0 chr3 37056712 37057018 -180980140 + AluSx SINE Alu 3 309 -3 292 267 64 85 chr3 37057018 37057125 -180980033 + L1MC/D LINE L1 4495 4603 -1543 332 309 86 30 chr3 37057402 37057635 -180979523 + L1MC/D LINE L1 5127 5372 -774 1232 147 0 0 chr3 37057643 37057832 -180979326 + L1MA2 LINE L1 1252 1750 -5815 15596 151 27 23 chr3 37057954 37060593 -180976565 + L1MA2 LINE L1 1685 4311 -3412 2064 113 10 13 chr3 37060593 37060893 -180976265 + AluSc SINE Alu 1 299 -10 15596 151 27 23 chr3 37060893 37063574 -180973584 + L1MA2 LINE L1 4311 7046 -677 1958 157 3 0 chr3 37063574 37063873 -180973285 + AluSx SINE Alu 1 300 -12 15596 151 27 23 chr3 37063873 37064555 -180972603 + L1MA2 LINE L1 7046 7723 0 690 290 46 29 chr3 37064568 37064916 -180972242 + L1MC/D LINE L1 5458 5811 -1997 315 0 0 0 chr3 37064967 37065002 -180972156 + (TG)n Simple_repeat Simple_repeat 1 35 0 330 210 150 0 chr3 37065034 37065134 -180972024 + L2 LINE L2 2218 2332 -982 216 0 0 0 chr3 37065179 37065203 -180971955 + (TTG)n Simple_repeat Simple_repeat 1 24 0 318 164 27 27 chr3 37065303 37065376 -180971782 - AluJ/FLAM SINE Alu -229 73 1 1798 297 79 24 chr3 37065378 37066246 -180970912 + L2 LINE L2 2356 3263 -50 28 86 0 0 chr3 37066316 37066386 -180970772 + AT_rich Low_complexity Low_complexity 1 70 0 3019 103 0 6 chr3 37066782 37067250 -180969908 - MER1A DNA MER1_type 0 529 25 23 54 0 0 chr3 37068077 37068114 -180969044 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr3 37068214 37068243 -180968915 + AT_rich Low_complexity Low_complexity 1 29 0 420 266 108 0 chr3 37068277 37068416 -180968742 - MIR SINE MIR -13 249 96 1014 180 0 6 chr3 37068466 37068644 -180968514 - AluSg/x SINE Alu -2 310 134 5680 86 21 57 chr3 37069763 37071088 -180966070 - L1PA13 LINE L1 -8 6155 4890 1768 105 0 4 chr3 37071088 37071326 -180965832 - AluSg/x SINE Alu -2 308 72 5680 86 21 57 chr3 37071326 37071419 -180965739 - L1PA13 LINE L1 -1273 4890 4795 2190 88 3 0 chr3 37071475 37071760 -180965398 - AluSx SINE Alu -11 301 16 6981 226 52 22 chr3 37072198 37076294 -180960864 - L1MC1 LINE L1 -34 6579 2254 9919 169 99 21 chr3 37076323 37076941 -180960217 - L1MC1 LINE L1 -4057 2369 1800 1796 149 38 0 chr3 37076941 37077229 -180959929 + AluJb SINE Alu 1 299 -13 9919 169 99 21 chr3 37077229 37078807 -180958351 - L1MC1 LINE L1 -4626 1800 3 1688 162 59 37 chr3 37079535 37079943 -180957215 + Looper DNA T2_type 1 417 -1141 414 57 0 0 chr3 37080000 37080053 -180957105 + (CA)n Simple_repeat Simple_repeat 1 53 0 211 318 36 36 chr3 37080081 37080191 -180956967 - MIR SINE MIR -10 252 143 5175 127 27 1 chr3 37080192 37081122 -180956036 + L1PA15 LINE L1 5142 6161 -4 28 29 0 0 chr3 37081226 37081261 -180955897 + AT_rich Low_complexity Low_complexity 1 35 0 321 319 168 22 chr3 37081920 37082105 -180955053 + MIR SINE MIR 24 235 -27 243 161 0 0 chr3 37083438 37083494 -180953664 + T-rich Low_complexity Low_complexity 1 56 0 7897 11 0 0 chr3 37083498 37084880 -180952278 - L1PA2 LINE L1 -2 6153 4772 5795 19 0 0 chr3 37084880 37085556 -180951602 + L1PA2 LINE L1 4095 4770 -1376 1161 209 85 26 chr3 37085835 37086141 -180951017 + MER5C DNA MER1_type 1 324 0 197 306 28 14 chr3 37086769 37086841 -180950317 - MIR SINE MIR -109 153 81 296 303 178 14 chr3 37087071 37087279 -180949879 - MIR SINE MIR -1 261 20 261 281 118 85 chr3 37087492 37087738 -180949420 + MIR SINE MIR 2 255 -7 279 0 0 0 chr3 37088073 37088104 -180949054 + (TG)n Simple_repeat Simple_repeat 2 32 0 255 263 0 0 chr3 37088104 37088184 -180948974 + (TA)n Simple_repeat Simple_repeat 2 81 0 1950 115 4 0 chr3 37088316 37088586 -180948572 + AluSx SINE Alu 1 271 -41 450 0 0 0 chr3 37088613 37088663 -180948495 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 1699 154 0 18 chr3 37089082 37089354 -180947804 + AluJo SINE Alu 1 267 -45 2510 143 46 10 chr3 37089610 37090023 -180947135 - MSTA LTR MaLR 0 428 1 2295 109 0 0 chr3 37090211 37090514 -180946644 + AluSx SINE Alu 1 303 -9 183 129 0 0 chr3 37090547 37090578 -180946580 + (T)n Simple_repeat Simple_repeat 1 31 0 236 278 113 31 chr3 37091320 37091417 -180945741 - MER5B DNA MER1_type -73 105 1 202 196 0 39 chr3 37091687 37091738 -180945420 + L2 LINE L2 3264 3312 -1 2214 74 10 20 chr3 37092348 37092645 -180944513 - AluY SINE Alu -3 308 15 21 0 0 0 chr3 37092682 37092703 -180944455 + AT_rich Low_complexity Low_complexity 1 21 0 956 192 98 5 chr3 37092818 37093021 -180944137 + MER58A DNA MER1_type 2 223 -1 268 281 67 14 chr3 37094258 37094379 -180942779 + MIR SINE MIR 25 138 -124 2041 40 0 8 chr3 37094379 37094629 -180942529 + L1PA5 LINE L1 5901 6148 -6 268 281 67 14 chr3 37094629 37094687 -180942471 + MIR SINE MIR 138 262 0 26 50 0 0 chr3 37095755 37095795 -180941363 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr3 37097484 37097512 -180939646 + AT_rich Low_complexity Low_complexity 1 28 0 186 368 84 0 chr3 37097580 37097675 -180939483 + MER5B DNA MER1_type 4 106 -72 278 363 10 10 chr3 37098279 37098381 -180938777 - MIR SINE MIR -160 102 1 189 247 71 149 chr3 37098381 37098457 -180938701 + MIR3 SINE MIR 94 157 -51 263 216 45 11 chr3 37098424 37098512 -180938646 + MIR SINE MIR 122 212 -50 14629 90 5 6 chr3 37099164 37102032 -180935126 - L1PA7 LINE L1 -6 6148 3301 3523 77 0 0 chr3 37102032 37102486 -180934672 + L1PA7 LINE L1 5652 6105 -49 2471 56 0 0 chr3 37202532 37202820 -180834338 - AluY SINE Alu -23 288 1 1000 217 14 9 chr3 37202824 37203041 -180834117 - AluJo SINE Alu -10 302 85 1509 204 10 10 chr3 37203072 37203249 -180833909 - AluJb SINE Alu 0 312 133 1363 240 10 3 chr3 37203249 37203549 -180833609 - AluSg1 SINE Alu -7 302 1 1509 204 10 10 chr3 37203549 37203670 -180833488 - AluJb SINE Alu -178 134 14 2064 110 48 14 chr3 37203841 37204131 -180833027 + AluSx SINE Alu 1 300 -12 2239 120 0 3 chr3 37204136 37204445 -180832713 + AluSx SINE Alu 1 308 -4 603 229 76 0 chr3 37204457 37204601 -180832557 + FRAM SINE Alu 1 155 -21 1332 209 77 33 chr3 37204601 37205031 -180832127 + L1MB4 LINE L1 5598 6046 -134 2159 110 0 17 chr3 37205140 37205440 -180831718 + AluSq SINE Alu 2 296 -17 25 0 0 0 chr3 37205561 37205586 -180831572 + AT_rich Low_complexity Low_complexity 1 25 0 185 213 106 0 chr3 37206251 37206298 -180830860 - L2 LINE L2 -5 3308 3257 188 306 56 14 chr3 37206457 37206529 -180830629 - L2 LINE L2 -2 3311 3237 2331 53 0 0 chr3 37206813 37207102 -180830056 + AluY SINE Alu 18 306 0 1128 192 77 86 chr3 37207413 37207631 -180829527 + L1MB8 LINE L1 5827 6045 -133 2438 83 3 10 chr3 37207631 37207944 -180829214 - AluY SINE Alu 0 311 1 2335 105 0 7 chr3 37207945 37208251 -180828907 - AluSx SINE Alu -8 304 1 1128 192 77 86 chr3 37208251 37208379 -180828779 + L1MB8 LINE L1 6044 6172 -6 225 382 7 15 chr3 37208468 37208604 -180828554 - MIR SINE MIR -36 226 92 1283 89 30 0 chr3 37208815 37208983 -180828175 - AluY SINE Alu -126 185 13 835 130 0 0 chr3 37208999 37209114 -180828044 + AluJb SINE Alu 178 292 -20 444 214 58 19 chr3 37209127 37209230 -180827928 - FLAM_A SINE Alu -32 110 4 5035 28 0 4 chr3 37209532 37210075 -180827083 - SVA Other Other 0 1386 846 1459 167 16 4 chr3 37210176 37210421 -180826737 - AluSx SINE Alu -64 248 1 461 172 255 0 chr3 37210770 37210914 -180826244 - MER58B DNA MER1_type 0 341 45 998 135 0 27 chr3 37210922 37211070 -180826088 + AluJo SINE Alu 1 144 -168 198 0 0 0 chr3 37211074 37211096 -180826062 + (A)n Simple_repeat Simple_repeat 1 22 0 1446 108 0 5 chr3 37211104 37211289 -180825869 + AluSq SINE Alu 2 185 -128 1661 90 0 5 chr3 37211389 37211601 -180825557 + AluSx SINE Alu 59 269 -43 2309 80 3 3 chr3 37211925 37212213 -180824945 + AluSq SINE Alu 4 291 -22 2060 114 3 17 chr3 37212223 37212522 -180824636 + AluSx SINE Alu 1 295 -17 1348 162 0 0 chr3 37212832 37213036 -180824122 + AluSp SINE Alu 105 308 -5 568 187 14 29 chr3 37213036 37213175 -180823983 - L1MC3 LINE L1 -37 7748 7612 1291 156 0 0 chr3 37213175 37213367 -180823791 + AluJo SINE Alu 104 295 -17 2260 97 10 7 chr3 37213369 37213669 -180823489 + AluSx SINE Alu 1 301 -11 2458 84 3 3 chr3 37214101 37214411 -180822747 + AluSx SINE Alu 1 310 -2 290 297 72 0 chr3 37214475 37214586 -180822572 + MLT1K LTR MaLR 168 286 -302 477 263 60 65 chr3 37214673 37214890 -180822268 + MLT1K LTR MaLR 346 561 -27 1488 123 0 31 chr3 37214979 37215206 -180821952 - AluSg/x SINE Alu 0 310 91 1761 164 21 3 chr3 37215208 37215494 -180821664 - AluJb SINE Alu -15 297 7 1058 63 8 0 chr3 37215816 37215943 -180821215 + AluY SINE Alu 3 130 -181 1098 179 56 0 chr3 37215971 37216166 -180820992 - AluJb SINE Alu -22 290 85 2093 128 42 0 chr3 37216580 37216869 -180820289 + AluSx SINE Alu 1 301 -11 2592 74 0 0 chr3 37216869 37217180 -180819978 + AluY SINE Alu 1 311 0 285 186 0 58 chr3 37217228 37217314 -180819844 + L1MEd LINE L1 22 102 -6017 455 200 0 0 chr3 37217803 37217883 -180819275 - AluJb SINE Alu -96 216 137 1697 182 7 0 chr3 37217883 37218169 -180818989 - AluSq SINE Alu -4 309 22 2273 72 0 0 chr3 37218586 37218876 -180818282 - AluSg SINE Alu 0 311 22 421 192 198 0 chr3 37218898 37219042 -180818116 - MER5A DNA MER1_type -9 180 4 570 250 22 67 chr3 37219062 37219186 -180817972 + MER5B DNA MER1_type 1 116 -62 2167 111 17 3 chr3 37219186 37219474 -180817684 - AluSg SINE Alu -18 292 1 570 250 22 67 chr3 37219474 37219529 -180817629 + MER5B DNA MER1_type 116 172 -6 273 309 41 8 chr3 37219535 37219658 -180817500 - MIR3 SINE MIR -49 159 33 2498 66 0 10 chr3 37220395 37220699 -180816459 - AluY SINE Alu -10 301 1 1144 148 0 0 chr3 37220702 37220871 -180816287 - FRAM SINE Alu -12 164 1 1200 160 104 76 chr3 37221215 37221503 -180815655 + AluJb SINE Alu 1 296 -16 1861 144 10 17 chr3 37221755 37221891 -180815267 + AluJb SINE Alu 1 136 -176 2072 130 10 0 chr3 37221891 37222190 -180814968 + AluSg1 SINE Alu 1 302 -7 1861 144 10 17 chr3 37222190 37222345 -180814813 + AluJb SINE Alu 136 290 -22 2298 79 10 3 chr3 37222465 37222756 -180814402 - AluSg SINE Alu -17 293 1 2370 84 3 0 chr3 37223009 37223308 -180813850 + AluY SINE Alu 1 300 -11 2187 114 3 0 chr3 37224237 37224536 -180812622 + AluY SINE Alu 1 300 -11 1055 192 61 12 chr3 37224647 37224892 -180812266 - MER33 DNA MER1_type -67 257 1 2308 120 3 0 chr3 37225177 37225485 -180811673 - AluSg SINE Alu -1 309 1 236 30 30 0 chr3 37225554 37225587 -180811571 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1990 116 18 11 chr3 37225593 37225868 -180811290 - AluSx SINE Alu -35 277 1 1594 161 0 0 chr3 37225932 37226174 -180810984 - AluJb SINE Alu -70 242 1 441 36 0 0 chr3 37226894 37226949 -180810209 + (GGCTG)n Simple_repeat Simple_repeat 4 58 0 619 185 0 0 chr3 37227116 37227224 -180809934 - FLAM_C SINE Alu -34 109 2 318 254 101 0 chr3 37227225 37227363 -180809795 - L1 LINE L1 -814 5332 5181 2105 122 0 28 chr3 37227367 37227688 -180809470 - AluSx SINE Alu 0 312 1 2273 94 7 10 chr3 37227729 37227901 -180809257 - AluY SINE Alu -5 306 134 2783 32 0 0 chr3 37227901 37228210 -180808948 - AluY SINE Alu -2 309 1 2273 94 7 10 chr3 37228210 37228344 -180808814 - AluY SINE Alu -177 134 1 1123 126 0 63 chr3 37228480 37228655 -180808503 - AluSx SINE Alu -148 164 1 1074 162 106 0 chr3 37228952 37229115 -180808043 - AluSg/x SINE Alu -8 304 115 405 0 0 0 chr3 37229115 37229160 -180807998 + (TG)n Simple_repeat Simple_repeat 2 46 0 1074 162 106 0 chr3 37229160 37229194 -180807964 - AluSg/x SINE Alu -197 115 86 2138 110 0 17 chr3 37229363 37229664 -180807494 - AluSx SINE Alu -16 296 1 503 213 26 18 chr3 37231647 37231764 -180805394 + L1MB5 LINE L1 6005 6113 -71 2237 101 0 26 chr3 37231764 37232072 -180805086 - AluSx SINE Alu -12 300 1 503 213 26 18 chr3 37232072 37232093 -180805065 + L1MB5 LINE L1 6113 6132 -52 701 218 106 12 chr3 37232120 37232319 -180804839 - MLT1A2 LTR MaLR -11 404 186 2366 63 3 3 chr3 37232320 37232607 -180804551 - AluY SINE Alu -24 287 1 310 111 0 0 chr3 37232608 37232653 -180804505 - MLT1A2 LTR MaLR -329 45 1 1196 129 0 0 chr3 37232674 37232837 -180804321 - AluSg/x SINE Alu -13 299 137 2498 87 0 3 chr3 37233132 37233443 -180803715 - AluSg SINE Alu 0 310 1 2286 101 14 0 chr3 37235048 37235345 -180801813 - AluSg SINE Alu -9 301 1 665 153 15 44 chr3 37235708 37235845 -180801313 + FLAM_C SINE Alu 1 133 0 1233 114 10 13 chr3 37235951 37236199 -180800959 + AluSx SINE Alu 89 300 -10 1808 142 7 14 chr3 37236199 37236481 -180800677 + AluSx SINE Alu 1 280 -32 320 149 0 0 chr3 37236936 37236983 -180800175 - U6 snRNA snRNA -60 47 1 2286 108 0 13 chr3 37237143 37237457 -180799701 - AluSx SINE Alu -2 310 1 517 208 15 69 chr3 37237599 37237729 -180799429 - L2 LINE L2 -4 3309 3187 531 99 59 40 chr3 37238205 37238306 -180798852 - FLAM_C SINE Alu -18 125 23 523 68 0 40 chr3 37238558 37238632 -180798526 + Charlie3 DNA MER1_type 2636 2706 -4 403 123 0 0 chr3 37238961 37239026 -180798132 - Alu SINE Alu -1 299 235 393 185 37 0 chr3 37239043 37239124 -180798034 + FAM SINE Alu 91 174 -1 463 86 29 0 chr3 37239150 37239220 -180797938 + AluSp SINE Alu 37 108 -205 2170 113 3 0 chr3 37239361 37239652 -180797506 - AluSg SINE Alu -18 292 1 1531 199 21 3 chr3 37239652 37239934 -180797224 - AluJo SINE Alu -15 297 11 1681 161 16 39 chr3 37239962 37240273 -180796885 - AluJo SINE Alu -2 310 7 1070 77 0 0 chr3 37240324 37240454 -180796704 - AluSg/x SINE Alu -12 300 171 1715 106 0 30 chr3 37240454 37240560 -180796598 - AluSx SINE Alu -81 231 123 2228 114 0 19 chr3 37240560 37240876 -180796282 - AluSg SINE Alu 0 310 1 1715 106 0 30 chr3 37240876 37241005 -180796153 - AluSx SINE Alu -189 123 3 403 286 91 15 chr3 37241690 37241889 -180795269 + L2 LINE L2 1776 1989 -1325 2273 116 0 0 chr3 37241889 37242191 -180794967 - AluSg SINE Alu -8 302 1 2261 110 10 0 chr3 37242428 37242728 -180794430 + AluSx SINE Alu 1 303 -9 6024 52 28 9 chr3 37242729 37243504 -180793654 + SVA Other Other 5 794 -592 2148 101 13 20 chr3 37243816 37244122 -180793036 - AluSq SINE Alu -4 309 6 2441 93 0 0 chr3 37244232 37244532 -180792626 - AluSg SINE Alu -10 300 1 2381 82 0 10 chr3 37244555 37244858 -180792300 - AluSx SINE Alu -12 300 1 596 172 0 97 chr3 37244922 37244996 -180792162 + FLAM_A SINE Alu 2 57 -245 1668 181 31 0 chr3 37244996 37245284 -180791874 - AluSx SINE Alu -15 297 1 596 172 0 97 chr3 37245284 37245354 -180791804 + FLAM_A SINE Alu 57 132 -170 1451 215 29 26 chr3 37245354 37245665 -180791493 + AluJo SINE Alu 1 312 0 601 148 85 170 chr3 37246089 37246139 -180791019 + AluJo SINE Alu 86 139 -173 2185 121 0 16 chr3 37246139 37246452 -180790706 + AluY SINE Alu 2 309 -2 601 148 85 170 chr3 37246452 37246479 -180790679 + AluJo SINE Alu 139 167 -145 2193 77 23 40 chr3 37246479 37246779 -180790379 + AluY SINE Alu 1 295 -16 601 148 85 170 chr3 37246779 37246923 -180790235 + AluJo SINE Alu 167 289 -23 390 291 26 8 chr3 37248030 37248147 -180789011 - FLAM_A SINE Alu -7 126 8 2348 94 0 10 chr3 37248177 37248484 -180788674 + AluY SINE Alu 1 304 -7 1917 140 3 3 chr3 37248496 37248782 -180788376 + AluY SINE Alu 1 286 -25 2458 57 3 7 chr3 37249053 37249349 -180787809 - AluY SINE Alu -16 295 1 612 171 54 31 chr3 37249353 37249482 -180787676 - AluSq/x SINE Alu -179 133 2 563 93 23 0 chr3 37249793 37249879 -180787279 + AluY SINE Alu 16 103 -208 299 242 290 11 chr3 37250050 37250205 -180786953 + MIR SINE MIR 11 121 -141 2173 124 13 0 chr3 37250205 37250511 -180786647 + AluSx SINE Alu 1 310 -2 299 242 290 11 chr3 37250511 37250541 -180786617 + MIR SINE MIR 121 248 -14 454 111 0 0 chr3 37250668 37250731 -180786427 + AluJ/FLAM SINE Alu 4 66 -246 324 148 0 0 chr3 37250824 37250878 -180786280 + AluJ/FRAM SINE Alu 216 269 -33 357 24 0 0 chr3 37251297 37251339 -180785819 + (CA)n Simple_repeat Simple_repeat 1 42 0 341 357 0 0 chr3 37253624 37253722 -180783436 + L1MC4 LINE L1 6605 6702 -1340 * 352 186 21 103 chr3 37253695 37253792 -180783366 - L1MC4 LINE L1 -1339 6703 6615 244 322 0 0 chr3 37253793 37253883 -180783275 - L1MC4 LINE L1 -1339 6703 6614 267 250 79 0 chr3 37253883 37253959 -180783199 + (CGTA)n Simple_repeat Simple_repeat 4 85 0 233 259 47 0 chr3 37253962 37254047 -180783111 - L1MC4 LINE L1 -1340 6702 6614 249 196 0 0 chr3 37254049 37254100 -180783058 + (TATATG)n Simple_repeat Simple_repeat 5 55 0 2280 102 0 0 chr3 37254100 37254384 -180782774 - AluSg SINE Alu -26 284 1 2223 110 0 3 chr3 37254405 37254706 -180782452 - AluSx SINE Alu -12 300 1 630 122 0 0 chr3 37254819 37254917 -180782241 + AluSp/q SINE Alu 203 300 -13 1164 72 6 18 chr3 37254918 37255084 -180782074 - THE1C LTR MaLR -211 164 1 221 319 14 0 chr3 37255085 37255154 -180782004 - MIR SINE MIR -80 182 113 2135 143 0 0 chr3 37255227 37255527 -180781631 + AluSx SINE Alu 1 300 -12 270 319 0 6 chr3 37256359 37256528 -180780630 + G-rich Low_complexity Low_complexity 3 170 0 371 268 0 17 chr3 37256571 37256932 -180780226 + G-rich Low_complexity Low_complexity 1 354 0 331 307 0 6 chr3 37256956 37257132 -180780026 + G-rich Low_complexity Low_complexity 2 176 0 220 319 0 0 chr3 37257156 37257275 -180779883 + G-rich Low_complexity Low_complexity 3 121 0 312 302 0 6 chr3 37257318 37257487 -180779671 + G-rich Low_complexity Low_complexity 2 169 0 2149 134 0 0 chr3 37257762 37258052 -180779106 + AluSx SINE Alu 1 290 -22 2408 93 3 7 chr3 37258054 37258364 -180778794 + AluY SINE Alu 1 309 -2 183 305 0 34 chr3 37258379 37258438 -180778720 + MIR SINE MIR 204 260 -2 393 143 14 29 chr3 37259384 37259454 -180777704 - AluJ/FLAM SINE Alu -233 69 1 625 261 38 0 chr3 37259461 37259618 -180777540 - FAM SINE Alu -12 163 1 1103 165 42 24 chr3 37259651 37259863 -180777295 + AluY SINE Alu 84 299 -12 2283 82 6 32 chr3 37259863 37260178 -180776980 + AluSp SINE Alu 1 307 -6 2507 58 7 0 chr3 37260187 37260481 -180776677 + AluY SINE Alu 1 296 -15 1151 81 0 0 chr3 37261247 37261383 -180775775 - AluSc SINE Alu -173 136 1 2519 50 0 7 chr3 37261911 37262213 -180774945 - AluY SINE Alu -11 300 1 2293 106 0 25 chr3 37262917 37263237 -180773921 - AluSx SINE Alu 0 312 1 2591 49 0 7 chr3 37264176 37264483 -180772675 - AluY SINE Alu -6 305 1 189 371 57 19 chr3 37264551 37264656 -180772502 - L3 LINE CR1 -1222 355 247 2084 90 6 56 chr3 37265236 37265559 -180771599 - AluSq SINE Alu -6 307 1 2414 77 7 0 chr3 37265580 37265878 -180771280 - AluY SINE Alu -11 300 1 185 174 0 22 chr3 37267119 37267165 -180769993 + G-rich Low_complexity Low_complexity 5 49 0 21 0 0 0 chr3 37267700 37267721 -180769437 + AT_rich Low_complexity Low_complexity 1 21 0 2594 51 0 0 chr3 37268701 37268995 -180768163 - AluY SINE Alu -17 294 1 310 111 0 0 chr3 37268996 37269041 -180768117 - MLT1A2 LTR MaLR -329 45 1 2313 110 0 0 chr3 37269062 37269361 -180767797 - AluSx SINE Alu -13 299 1 365 237 102 100 chr3 37270245 37270295 -180766863 - L1ME4a LINE L1 -1 6120 6072 2181 106 18 0 chr3 37270295 37270579 -180766579 + AluSq SINE Alu 1 289 -24 365 237 102 100 chr3 37270579 37270938 -180766220 - L1ME4a LINE L1 -49 6072 5710 348 43 0 0 chr3 37271036 37271082 -180766076 + (TG)n Simple_repeat Simple_repeat 2 47 0 209 257 99 134 chr3 37271663 37271798 -180765360 - MER5B DNA MER1_type -8 170 41 396 0 0 0 chr3 37271798 37271842 -180765316 + (TG)n Simple_repeat Simple_repeat 2 45 0 209 257 99 134 chr3 37271842 37271877 -180765281 - MER5B DNA MER1_type -137 41 6 2493 44 14 0 chr3 37271891 37272186 -180764972 - AluSq SINE Alu -14 299 1 1472 139 18 118 chr3 37272328 37272467 -180764691 + AluJb SINE Alu 1 90 -222 2555 62 0 0 chr3 37272467 37272772 -180764386 + AluY SINE Alu 1 305 -6 1472 139 18 118 chr3 37272772 37272963 -180764195 + AluJb SINE Alu 90 298 -14 554 126 11 32 chr3 37273249 37273344 -180763814 - AluSq SINE Alu -144 169 77 222 265 83 62 chr3 37273406 37273608 -180763550 + MIR SINE MIR 3 205 -57 295 206 59 0 chr3 37273820 37273888 -180763270 + MER5A DNA MER1_type 117 188 -1 180 0 0 0 chr3 37273914 37273934 -180763224 + (TC)n Simple_repeat Simple_repeat 2 21 0 2360 77 3 0 chr3 37273934 37274220 -180762938 - AluSx SINE Alu -25 287 1 914 249 57 44 chr3 37274221 37274527 -180762631 - L1M4 LINE L1 -941 5205 4891 2363 100 0 7 chr3 37274527 37274837 -180762321 - AluSx SINE Alu -4 308 1 914 249 57 44 chr3 37274837 37274935 -180762223 - L1M4 LINE L1 -1255 4891 4796 1306 89 0 0 chr3 37274935 37275103 -180762055 - AluYa5 SINE Alu -8 303 136 1114 210 25 43 chr3 37275105 37275251 -180761907 - L1M4 LINE L1 -1339 4807 4660 2254 110 0 0 chr3 37275251 37275550 -180761608 - AluSx SINE Alu -13 299 1 1114 210 25 43 chr3 37275550 37275727 -180761431 - L1M4 LINE L1 -1486 4660 4490 1505 169 3 41 chr3 37275855 37275897 -180761261 + L1M3 LINE L1 5449 5491 -680 2338 91 7 0 chr3 37275897 37276193 -180760965 + AluY SINE Alu 1 298 -13 1637 170 35 14 chr3 37276198 37276486 -180760672 + AluJb SINE Alu 1 294 -18 2146 106 0 3 chr3 37276491 37276819 -180760339 + AluSx SINE Alu 1 327 0 1505 169 3 41 chr3 37276819 37277058 -180760100 + L1M3 LINE L1 5499 5732 -439 2104 127 0 3 chr3 37277058 37277365 -180759793 + AluSp SINE Alu 1 306 -7 186 212 242 0 chr3 37277367 37277433 -180759725 + MIR SINE MIR 170 251 -11 185 200 0 0 chr3 37277405 37277440 -180759718 + L2 LINE L2 3269 3303 -10 * 1919 73 0 13 chr3 37277440 37277673 -180759485 + AluSq SINE Alu 1 230 -83 394 245 31 87 chr3 37278017 37278058 -180759100 + MIR SINE MIR 68 110 -152 2393 94 0 7 chr3 37278058 37278367 -180758791 - AluSx SINE Alu -5 307 1 394 245 31 87 chr3 37278367 37278521 -180758637 + MIR SINE MIR 110 252 -10 1166 59 0 0 chr3 37279019 37279154 -180758004 + AluSq/x SINE Alu 1 135 -177 2199 100 13 19 chr3 37279154 37279464 -180757694 + AluSx SINE Alu 1 308 -4 1692 128 120 0 chr3 37279527 37279793 -180757365 + AluJo SINE Alu 1 298 -14 226 311 0 0 chr3 37280017 37280091 -180757067 - L1M4 LINE L1 -1428 4718 4645 2502 68 0 10 chr3 37280153 37280464 -180756694 - AluY SINE Alu -3 308 1 2323 114 7 0 chr3 37280474 37280782 -180756376 - AluSg SINE Alu 0 310 1 388 258 24 24 chr3 37280881 37281005 -180756153 + MLT1F LTR MaLR 419 542 0 710 276 47 41 chr3 37281028 37281368 -180755790 + MLT1J2 LTR MaLR 108 449 -1 2367 101 0 0 chr3 37281370 37281676 -180755482 - AluSg SINE Alu -4 306 1 2019 103 4 0 chr3 37281703 37281965 -180755193 - AluSx SINE Alu -49 263 1 430 265 27 27 chr3 37281989 37282136 -180755022 - MIR SINE MIR -46 216 70 349 337 86 11 chr3 37282210 37282397 -180754761 + MIR SINE MIR 52 252 -10 183 179 26 0 chr3 37283007 37283046 -180754112 - MIR SINE MIR -117 145 106 1506 114 59 62 chr3 37283078 37283384 -180753774 - AluY SINE Alu -5 306 2 2330 80 3 10 chr3 37283798 37284099 -180753059 + AluSx SINE Alu 1 299 -13 1156 168 0 0 chr3 37284569 37284742 -180752416 - AluJb SINE Alu -3 309 137 1389 181 0 9 chr3 37284842 37285068 -180752090 - AluJb SINE Alu -88 224 1 6135 159 47 37 chr3 37285070 37285523 -180751635 - Tigger1 DNA MER2_type -1080 1338 891 2251 97 7 10 chr3 37285523 37285821 -180751337 - AluSg SINE Alu -13 297 1 6135 159 47 37 chr3 37285821 37286368 -180750790 - Tigger1 DNA MER2_type -1527 891 351 1771 121 70 4 chr3 37286368 37286625 -180750533 + AluJb SINE Alu 15 288 -24 6135 159 47 37 chr3 37286625 37286644 -180750514 - Tigger1 DNA MER2_type -2067 351 334 2238 93 7 7 chr3 37286644 37286945 -180750213 + AluSp SINE Alu 1 301 -12 6135 159 47 37 chr3 37286945 37287066 -180750092 - Tigger1 DNA MER2_type -2084 334 216 2371 76 0 13 chr3 37287066 37287368 -180749790 + AluY SINE Alu 1 298 -13 6135 159 47 37 chr3 37287368 37287530 -180749628 - Tigger1 DNA MER2_type -2202 216 20 2290 212 73 10 chr3 37287591 37287719 -180749439 - L1MB8 LINE L1 -267 5911 5792 1991 107 27 23 chr3 37287719 37288018 -180749140 + AluSx SINE Alu 1 300 -12 2290 212 73 10 chr3 37288018 37288493 -180748665 - L1MB8 LINE L1 -386 5792 5270 921 149 0 50 chr3 37288601 37288762 -180748396 - FAM SINE Alu -23 162 10 535 259 119 16 chr3 37289636 37289821 -180747337 - MIR SINE MIR -38 224 21 423 142 9 26 chr3 37289999 37290112 -180747046 + GA-rich Low_complexity Low_complexity 1 111 0 583 139 0 10 chr3 37290181 37290282 -180746876 - FLAM_A SINE Alu -8 134 35 1926 144 46 0 chr3 37290612 37290897 -180746261 - AluSx SINE Alu -14 298 1 321 309 138 0 chr3 37290900 37291023 -180746135 - MIR SINE MIR -115 147 8 998 133 0 26 chr3 37291157 37291308 -180745850 + FRAM SINE Alu 11 157 -19 2515 68 0 0 chr3 37291450 37291742 -180745416 + AluSq SINE Alu 1 292 -21 2227 108 3 16 chr3 37292346 37292652 -180744506 + AluSq SINE Alu 1 302 -11 1642 178 4 7 chr3 37292901 37293176 -180743982 + AluJb SINE Alu 16 289 -23 230 324 178 14 chr3 37293762 37293795 -180743363 + MIR SINE MIR 5 31 -231 2189 91 52 0 chr3 37293795 37294082 -180743076 - AluSx SINE Alu -10 302 1 230 324 178 14 chr3 37294082 37294261 -180742897 + MIR SINE MIR 31 252 -10 601 146 68 0 chr3 37294787 37294890 -180742268 + AluSq/x SINE Alu 2 111 -202 2138 109 7 23 chr3 37295169 37295472 -180741686 - AluSx SINE Alu -14 298 1 2217 102 3 29 chr3 37295836 37296151 -180741007 + AluSg SINE Alu 3 309 -1 388 133 0 0 chr3 37296152 37296212 -180740946 - HY3 scRNA scRNA -40 61 2 301 295 93 42 chr3 37296215 37296408 -180740750 - MLT1J LTR MaLR -294 217 15 1025 87 0 0 chr3 37296455 37296582 -180740576 + AluY SINE Alu 167 293 -18 241 343 0 0 chr3 37296596 37296663 -180740495 - L2 LINE L2 -1 3271 3205 182 274 20 0 chr3 37296754 37296805 -180740353 - L2 LINE L2 -252 3061 3010 2407 80 0 0 chr3 37297033 37297334 -180739824 + AluY SINE Alu 1 301 -10 1069 182 0 0 chr3 37297347 37297523 -180739635 + AluJb SINE Alu 137 312 0 322 336 31 0 chr3 37300384 37300512 -180736646 + MER103 DNA DNA 18 149 -17 2241 108 7 0 chr3 37300753 37301049 -180736109 - AluSx SINE Alu -11 301 4 2324 109 0 0 chr3 37302690 37302993 -180734165 - AluSg SINE Alu -7 303 1 2386 67 11 0 chr3 37303107 37303391 -180733767 - AluY SINE Alu -8 303 17 2516 69 0 0 chr3 37303939 37304229 -180732929 + AluSc SINE Alu 1 290 -19 314 281 49 0 chr3 37305141 37305223 -180731935 - L1ME4a LINE L1 -1 6120 6035 2458 81 0 0 chr3 37305236 37305534 -180731624 - AluSx SINE Alu -14 298 1 262 250 98 0 chr3 37305863 37305955 -180731203 - LTR67 LTR ERVL -7 550 450 2197 95 7 7 chr3 37305965 37306260 -180730898 + AluSx SINE Alu 5 299 -13 1227 85 0 0 chr3 37306597 37306750 -180730408 + AluSg/x SINE Alu 149 301 -11 2074 122 3 3 chr3 37307357 37307651 -180729507 + AluSx SINE Alu 1 294 -18 39 0 0 0 chr3 37307977 37308016 -180729142 + GC_rich Low_complexity Low_complexity 1 39 0 2398 63 6 22 chr3 37308259 37308575 -180728583 - AluSx SINE Alu -1 311 1 2253 96 6 13 chr3 37309376 37309690 -180727468 - AluSx SINE Alu 0 312 1 21 36 0 0 chr3 37310505 37310533 -180726625 + GC_rich Low_complexity Low_complexity 1 28 0 2334 89 6 19 chr3 37312777 37313093 -180724065 + AluSx SINE Alu 1 312 0 663 263 29 15 chr3 37313207 37313412 -180723746 + MIR SINE MIR 52 259 -3 1568 131 26 4 chr3 37313959 37314188 -180722970 - AluJb SINE Alu -78 234 1 1875 45 0 9 chr3 37314209 37314433 -180722725 - AluY SINE Alu 0 311 90 2305 82 11 0 chr3 37314533 37314814 -180722344 - AluSx SINE Alu -28 284 1 300 290 18 129 chr3 37314834 37314939 -180722219 - L1 LINE L1 -1678 4468 4353 2654 68 0 0 chr3 37314939 37315246 -180721912 - AluSx SINE Alu -5 307 1 300 290 18 129 chr3 37315246 37315299 -180721859 - L1 LINE L1 -1793 4353 4340 789 145 8 0 chr3 37315299 37315430 -180721728 - FLAM_C SINE Alu -1 132 1 300 290 18 129 chr3 37315430 37315494 -180721664 - L1 LINE L1 -1806 4340 4270 1342 84 0 0 chr3 37315494 37315661 -180721497 - AluY SINE Alu -12 299 133 2555 38 10 0 chr3 37315661 37315954 -180721204 - AluY SINE Alu -15 296 1 318 319 55 61 chr3 37315958 37316121 -180721037 - L1 LINE L1 -1979 4167 4006 2235 121 0 3 chr3 37316125 37316423 -180720735 - AluSx SINE Alu -15 297 1 1105 95 0 0 chr3 37316423 37316560 -180720598 - AluSq/x SINE Alu -176 137 1 2510 90 3 0 chr3 37316576 37316888 -180720270 - AluSp SINE Alu 0 313 1 1783 83 8 12 chr3 37316965 37317205 -180719953 - AluY SINE Alu -13 298 60 367 292 71 0 chr3 37317233 37317346 -180719812 - L1MC5 LINE L1 -542 7419 7299 727 138 9 0 chr3 37317461 37317577 -180719581 + AluSq/x SINE Alu 2 118 -195 840 238 69 14 chr3 37317621 37317898 -180719260 - L1MB8 LINE L1 -6 6172 5881 221 200 46 46 chr3 37318103 37318168 -180718990 - MER91 DNA MER1_type 0 190 126 2114 131 0 0 chr3 37318199 37318489 -180718669 + AluSx SINE Alu 2 291 -21 1533 199 0 4 chr3 37318498 37318775 -180718383 + AluJb SINE Alu 29 304 -8 246 178 0 0 chr3 37318804 37318849 -180718309 + MLT1H LTR MaLR 117 161 -388 2276 94 3 16 chr3 37318972 37319279 -180717879 - AluY SINE Alu -8 303 1 1200 252 125 6 chr3 37319346 37319699 -180717459 + MLT1H LTR MaLR 153 547 -2 1962 152 0 0 chr3 37319706 37319868 -180717290 - AluSx SINE Alu -18 294 130 2365 95 13 0 chr3 37319868 37320173 -180716985 - AluSx SINE Alu -3 309 1 1962 152 0 0 chr3 37320173 37320300 -180716858 - AluSx SINE Alu -181 131 5 629 298 172 32 chr3 37320577 37321071 -180716087 - L2 LINE L2 -371 2943 2520 1944 138 3 33 chr3 37321071 37321245 -180715913 - AluJb SINE Alu -15 297 119 2082 113 10 17 chr3 37321245 37321546 -180715612 - AluSg1 SINE Alu -10 299 1 2366 88 0 41 chr3 37321546 37321864 -180715294 - AluY SINE Alu -6 305 1 1944 138 3 33 chr3 37321864 37321993 -180715165 - AluJb SINE Alu -191 121 2 629 298 172 32 chr3 37321993 37322062 -180715096 - L2 LINE L2 -794 2520 2301 2334 126 0 0 chr3 37322112 37322422 -180714736 + AluSx SINE Alu 1 310 -2 1643 142 48 62 chr3 37322448 37322757 -180714401 + AluJo SINE Alu 1 305 -7 1303 234 38 3 chr3 37322765 37323055 -180714103 + AluJb SINE Alu 1 300 -12 2291 106 3 3 chr3 37323056 37323358 -180713800 + AluSg SINE Alu 1 302 -8 1154 172 9 122 chr3 37323397 37323734 -180713424 - AluSx SINE Alu -2 300 2 2012 93 15 4 chr3 37323734 37324003 -180713155 - AluY SINE Alu -12 299 28 1977 143 31 0 chr3 37324279 37324573 -180712585 - AluJb SINE Alu -9 303 1 189 196 0 0 chr3 37324667 37324713 -180712445 + A-rich Low_complexity Low_complexity 1 46 0 757 207 23 52 chr3 37324869 37325043 -180712115 - AluJo SINE Alu -141 171 3 230 136 23 0 chr3 37325083 37325127 -180712031 + GA-rich Low_complexity Low_complexity 3 47 0 781 173 0 0 chr3 37326440 37326573 -180710585 - FLAM_A SINE Alu 0 133 1 2261 94 0 39 chr3 37326881 37327188 -180709970 - AluSx SINE Alu -17 295 1 1987 169 0 0 chr3 37327356 37327652 -180709506 - AluJb SINE Alu -16 296 1 1366 168 82 8 chr3 37328082 37328338 -180708820 - AluJb SINE Alu -29 283 9 2274 67 0 21 chr3 37328338 37328623 -180708535 - AluY SINE Alu -32 279 1 1805 162 27 7 chr3 37328789 37329086 -180708072 + AluJb SINE Alu 1 303 -9 1582 169 3 71 chr3 37329097 37329240 -180707918 + AluJo SINE Alu 5 156 -156 2570 61 0 0 chr3 37329240 37329537 -180707621 + AluY SINE Alu 1 297 -14 1582 169 3 71 chr3 37329537 37329719 -180707439 + AluJo SINE Alu 156 308 -4 780 159 0 8 chr3 37329720 37329852 -180707306 + AluJo/FLAM SINE Alu 1 131 -171 1305 159 151 4 chr3 37329854 37329946 -180707212 + AluJo SINE Alu 1 78 -234 219 36 0 0 chr3 37329946 37329974 -180707184 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1305 159 151 4 chr3 37329974 37330132 -180707026 + AluJo SINE Alu 78 288 -24 1646 168 51 10 chr3 37330158 37330450 -180706708 - AluJb SINE Alu -8 304 1 446 176 11 11 chr3 37330455 37330546 -180706612 - FLAM_A SINE Alu -17 125 35 1042 201 52 81 chr3 37330551 37330720 -180706438 - AluJo SINE Alu -2 300 128 2305 82 0 7 chr3 37330720 37331012 -180706146 - AluSg1 SINE Alu -19 290 1 1042 201 52 81 chr3 37331012 37331079 -180706079 - AluJo SINE Alu -174 128 61 1884 160 0 3 chr3 37331079 37331379 -180705779 - AluJb SINE Alu -13 299 1 1866 168 11 0 chr3 37331381 37331666 -180705492 - AluJb SINE Alu -16 296 9 1042 201 52 81 chr3 37331666 37331734 -180705424 - AluJo SINE Alu -242 60 1 21 0 0 0 chr3 37331734 37331755 -180705403 + AT_rich Low_complexity Low_complexity 1 21 0 2104 134 3 0 chr3 37331829 37332127 -180705031 - AluSx SINE Alu -11 301 3 1078 166 0 117 chr3 37332129 37332199 -180704959 - AluJb SINE Alu -29 283 206 2115 128 0 10 chr3 37332199 37332504 -180704654 - AluSx SINE Alu -10 302 1 1078 166 0 117 chr3 37332504 37332608 -180704550 - AluJb SINE Alu -106 206 91 2430 80 6 13 chr3 37332608 37332921 -180704237 - AluY SINE Alu 0 311 1 2400 77 0 7 chr3 37332925 37333222 -180703936 - AluSg SINE Alu -15 295 1 1078 166 0 117 chr3 37333222 37333288 -180703870 - AluJb SINE Alu -224 88 66 1988 130 0 23 chr3 37333522 37333821 -180703337 + AluSx SINE Alu 1 292 -20 28 0 0 0 chr3 37334354 37334382 -180702776 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr3 37335052 37335078 -180702080 + AT_rich Low_complexity Low_complexity 1 26 0 199 139 83 0 chr3 37335465 37335501 -180701657 - MIR SINE MIR -183 79 41 226 359 0 0 chr3 37335501 37335565 -180701593 - MIR SINE MIR -185 77 14 180 286 207 29 chr3 37336279 37336296 -180700862 + MIR3 SINE MIR 40 53 -155 2195 102 3 13 chr3 37336296 37336600 -180700558 - AluSq SINE Alu -5 308 8 180 286 207 29 chr3 37336600 37336722 -180700436 + MIR3 SINE MIR 53 204 -4 706 264 24 0 chr3 37336939 37337106 -180700052 - MER20 DNA MER1_type -48 171 1 2477 61 0 7 chr3 37337272 37337568 -180699590 - AluY SINE Alu -17 294 1 826 188 137 21 chr3 37337616 37337850 -180699308 - Tigger7 DNA MER2_type 0 2491 2231 411 160 300 10 chr3 37338874 37338974 -180698184 + AluJ/FLAM SINE Alu 1 86 -216 2045 127 16 13 chr3 37338978 37339286 -180697872 + AluSc SINE Alu 1 309 0 1813 169 24 0 chr3 37339300 37339596 -180697562 + AluSx SINE Alu 1 303 -9 2379 107 3 0 chr3 37339703 37340012 -180697146 + AluSx SINE Alu 1 310 -2 677 252 83 12 chr3 37340109 37340363 -180696795 + L1ME1 LINE L1 5554 5825 -341 1502 199 62 7 chr3 37340369 37340586 -180696572 + AluJo SINE Alu 7 243 -69 309 119 194 0 chr3 37340586 37340653 -180696505 - MADE1 DNA Mariner 0 80 1 1502 199 62 7 chr3 37340653 37340707 -180696451 + AluJo SINE Alu 243 293 -19 495 283 69 0 chr3 37340723 37340942 -180696216 + L1ME1 LINE L1 5813 6056 -115 2234 101 0 39 chr3 37341015 37341147 -180696011 + AluSx SINE Alu 5 141 -171 2186 99 43 7 chr3 37341147 37341449 -180695709 + AluSp SINE Alu 1 313 0 2234 101 0 39 chr3 37341449 37341624 -180695534 + AluSx SINE Alu 141 300 -12 312 247 104 52 chr3 37341918 37342072 -180695086 + L1ME4a LINE L1 5959 6120 -1 859 167 44 56 chr3 37342200 37342263 -180694895 - L1MB8 LINE L1 -5 6173 6111 1990 122 24 0 chr3 37342263 37342551 -180694607 + AluSg SINE Alu 1 295 -15 859 167 44 56 chr3 37342551 37342738 -180694420 - L1MB8 LINE L1 -67 6111 5926 1247 121 56 5 chr3 37342742 37342957 -180694201 - Tigger1 DNA MER2_type 0 2418 2193 2104 73 15 0 chr3 37343161 37343422 -180693736 - AluSp SINE Alu -48 265 1 1855 120 84 4 chr3 37343424 37343699 -180693459 - AluSx SINE Alu -15 297 1 209 167 0 0 chr3 37347101 37347137 -180690021 + T-rich Low_complexity Low_complexity 1 36 0 1123 89 0 0 chr3 37347240 37347375 -180689783 - AluSq/x SINE Alu -178 135 1 2130 129 7 0 chr3 37347499 37347801 -180689357 - AluSx SINE Alu -8 304 1 1299 155 92 67 chr3 37347871 37348155 -180689003 - AluJo SINE Alu -21 291 1 238 362 51 29 chr3 37348261 37348399 -180688759 - MIR3 SINE MIR -61 147 7 1907 138 3 10 chr3 37348753 37349049 -180688109 + AluSx SINE Alu 1 294 -18 886 168 0 0 chr3 37349137 37349280 -180687878 - AluJb SINE Alu -3 309 167 351 0 0 0 chr3 37349310 37349349 -180687809 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 286 99 0 0 chr3 37349349 37349392 -180687766 - AluJb SINE Alu -20 281 245 1015 129 6 35 chr3 37349393 37349564 -180687594 - AluJb SINE Alu -146 166 1 2221 128 0 0 chr3 37349620 37349917 -180687241 - AluSq SINE Alu -16 297 1 987 218 12 68 chr3 37350103 37350270 -180686888 - AluJb SINE Alu -24 288 138 1371 201 115 0 chr3 37350270 37350549 -180686609 - AluJb SINE Alu 0 312 2 987 218 12 68 chr3 37350549 37350633 -180686525 - AluJb SINE Alu -174 138 51 722 157 75 41 chr3 37350642 37350789 -180686369 - AluJo SINE Alu -159 153 2 230 263 97 26 chr3 37350953 37351067 -180686091 + MER94 DNA DNA 13 134 0 2280 109 3 3 chr3 37352341 37352644 -180684514 + AluSp SINE Alu 1 303 -10 2554 72 0 0 chr3 37352655 37352960 -180684198 + AluY SINE Alu 1 305 -6 1728 202 0 10 chr3 37353216 37353518 -180683640 + AluJb SINE Alu 1 299 -13 2441 68 0 0 chr3 37353859 37354152 -180683006 - AluY SINE Alu -18 293 1 2036 147 7 0 chr3 37354682 37354982 -180682176 - AluJb SINE Alu -10 302 1 929 248 146 21 chr3 37355020 37355619 -180681539 - L1ME3A LINE L1 -4 6166 5491 1364 188 0 103 chr3 37355627 37355751 -180681407 - AluJo SINE Alu -14 298 163 2158 70 10 34 chr3 37355751 37356049 -180681109 - AluSq SINE Alu -12 301 11 1364 188 0 103 chr3 37356049 37356244 -180680914 - AluJo SINE Alu -149 163 12 631 275 82 28 chr3 37356263 37356661 -180680497 - L1ME3A LINE L1 -700 5478 5063 1267 98 0 0 chr3 37356663 37356826 -180680332 - AluSg/x SINE Alu -16 296 134 2543 73 3 0 chr3 37356826 37357127 -180680031 - AluSq SINE Alu -11 302 1 273 287 120 7 chr3 37357127 37357277 -180679881 - L1ME3A LINE L1 -1074 5072 4906 512 197 96 81 chr3 37357315 37357513 -180679645 - L1ME3A LINE L1 -1393 4753 4553 600 75 0 0 chr3 37357513 37357593 -180679565 - AluY SINE Alu -16 295 216 1479 244 56 11 chr3 37357625 37358071 -180679087 - L1ME LINE L1 -343 5823 5358 2563 65 0 0 chr3 37358071 37358381 -180678777 - AluY SINE Alu -1 310 1 723 249 90 50 chr3 37358381 37358749 -180678409 - L1ME3A LINE L1 -1643 4503 4118 198 0 0 0 chr3 37358751 37358773 -180678385 + (TG)n Simple_repeat Simple_repeat 1 22 0 1791 158 10 42 chr3 37358774 37359084 -180678074 - AluJb SINE Alu -12 300 1 958 84 8 0 chr3 37359142 37359261 -180677897 - AluSg/x SINE Alu -118 192 73 2221 111 6 16 chr3 37359262 37359577 -180677581 - AluSx SINE Alu 0 312 1 1145 120 14 14 chr3 37359577 37359785 -180677373 - L1P5 LINE L1 -622 5529 5322 2245 111 3 0 chr3 37359785 37360082 -180677076 - AluSq SINE Alu -15 298 1 1769 136 117 0 chr3 37360082 37360399 -180676759 - MER51B LTR ERV1 -23 354 1 185 262 102 112 chr3 37360569 37360775 -180676383 - MIR SINE MIR -56 206 3 334 243 37 28 chr3 37360791 37360846 -180676312 + Tigger8 DNA MER2_type 141 194 -472 1889 101 4 26 chr3 37360846 37361114 -180676044 - AluSg SINE Alu -6 304 43 334 243 37 28 chr3 37361114 37361165 -180675993 + Tigger8 DNA MER2_type 194 248 -418 1944 136 40 13 chr3 37361165 37361466 -180675692 + AluJb SINE Alu 1 309 -3 2174 79 0 7 chr3 37362153 37362433 -180674725 + AluSg SINE Alu 1 278 -32 210 71 0 0 chr3 37362433 37362461 -180674697 + (CAAT)n Simple_repeat Simple_repeat 4 31 0 2508 81 0 0 chr3 37362885 37363195 -180673963 + AluSx SINE Alu 1 310 -2 394 309 85 0 chr3 37363721 37363886 -180673272 + MIR SINE MIR 61 239 -23 271 254 0 0 chr3 37363978 37364045 -180673113 - L2 LINE L2 -6 3266 3200 931 195 13 0 chr3 37364226 37364385 -180672773 - AluJb SINE Alu -80 232 72 299 289 10 10 chr3 37364434 37364536 -180672622 - MIR SINE MIR -60 148 65 216 0 0 0 chr3 37365176 37365200 -180671958 + (TG)n Simple_repeat Simple_repeat 2 25 0 371 280 68 25 chr3 37367617 37367735 -180669423 + MLT1K LTR MaLR 203 325 -263 2358 109 0 3 chr3 37367745 37368057 -180669101 + AluSx SINE Alu 1 311 -1 181 308 15 15 chr3 37368204 37368269 -180668889 - MIR SINE MIR -166 96 32 1073 84 0 0 chr3 37368705 37368836 -180668322 + AluSq/x SINE Alu 1 131 -182 2235 125 3 0 chr3 37368839 37369144 -180668014 + AluSx SINE Alu 1 306 -6 2375 89 6 16 chr3 37369155 37369471 -180667687 + AluSq SINE Alu 1 313 0 195 315 0 0 chr3 37369736 37369790 -180667368 - MIR SINE MIR -138 70 17 2288 99 7 0 chr3 37370666 37370958 -180666200 + AluSg SINE Alu 1 294 -16 1646 116 13 0 chr3 37370958 37371181 -180665977 + AluSc SINE Alu 71 298 -11 214 175 0 0 chr3 37371619 37371659 -180665499 + (ATG)n Simple_repeat Simple_repeat 2 41 0 328 298 41 0 chr3 37371660 37371781 -180665377 - MIR SINE MIR -26 236 111 2352 91 10 0 chr3 37372346 37372644 -180664514 - AluY SINE Alu -10 301 1 448 285 69 44 chr3 37372911 37373378 -180663780 - L2 LINE L2 -213 3059 2581 1750 87 20 24 chr3 37373433 37373722 -180663436 - AluSp SINE Alu 0 313 44 1420 119 9 0 chr3 37374021 37374239 -180662919 - THE1C LTR MaLR 0 375 156 1980 95 0 0 chr3 37374244 37374487 -180662671 + AluSq SINE Alu 6 248 -65 1012 136 0 0 chr3 37374488 37374628 -180662530 + AluSx SINE Alu 45 184 -128 379 283 11 68 chr3 37474657 37474807 -180562351 + MER58B DNA MER1_type 162 300 -2120 2167 98 0 17 chr3 37474807 37475104 -180562054 - AluSg SINE Alu -18 292 1 379 283 11 68 chr3 37475104 37475144 -180562014 + MER58B DNA MER1_type 300 341 0 555 298 55 7 chr3 37475218 37475493 -180561665 + LTR33 LTR ERVL 184 471 -50 202 325 162 0 chr3 37475771 37475888 -180561270 - L2 LINE L2 -415 2899 2764 5607 113 10 61 chr3 37476880 37477687 -180559471 - L1PA15 LINE L1 -3 6162 5384 2502 66 0 0 chr3 37477687 37477988 -180559170 + AluY SINE Alu 1 301 -10 5607 113 10 61 chr3 37477988 37478435 -180558723 - L1PA15 LINE L1 -781 5384 4916 316 363 171 0 chr3 37478755 37478901 -180558257 - L2 LINE L2 0 3272 3102 603 286 118 29 chr3 37478932 37479170 -180557988 + MIR SINE MIR 2 260 -2 416 350 19 44 chr3 37480031 37480191 -180556967 + MER91A DNA MER1_type 2 157 -39 243 114 0 0 chr3 37481301 37481345 -180555813 - MLT2C1 LTR ERVL -4 514 357 237 218 0 0 chr3 37481358 37481436 -180555722 + (TA)n Simple_repeat Simple_repeat 1 78 0 1883 151 113 20 chr3 37481452 37481890 -180555268 - Tigger2 DNA MER2_type -22 2696 2 282 161 49 0 chr3 37481890 37481971 -180555187 + (TA)n Simple_repeat Simple_repeat 1 85 0 1636 169 30 30 chr3 37482014 37482352 -180554806 - MLT2C1 LTR ERVL -40 357 20 1154 218 36 27 chr3 37482519 37482987 -180554171 - MLT2B1 LTR ERVL -2 518 3 425 248 54 16 chr3 37482989 37483118 -180554040 + MER69A DNA AcHobo 42 175 -2 334 302 60 7 chr3 37483121 37483270 -180553888 + MIR SINE MIR 62 218 -44 280 290 57 72 chr3 37483537 37483730 -180553428 - MIR SINE MIR -33 229 40 357 323 92 24 chr3 37483894 37484058 -180553100 + MER91A DNA MER1_type 19 193 -3 881 217 0 0 chr3 37484269 37484421 -180552737 - FRAM SINE Alu -18 158 7 189 0 0 0 chr3 37484579 37484600 -180552558 + (T)n Simple_repeat Simple_repeat 1 21 0 828 160 115 30 chr3 37484878 37485078 -180552080 + MER20 DNA MER1_type 3 219 0 410 260 144 56 chr3 37486305 37486799 -180550359 - L1ME4a LINE L1 -23 6098 5549 303 283 0 0 chr3 37486950 37487056 -180550102 - L1ME4a LINE L1 -2190 3956 3851 330 286 21 42 chr3 37489088 37489280 -180547878 - HAL1 LINE L1 -2 2505 2318 317 286 131 30 chr3 37489362 37489530 -180547628 - HAL1 LINE L1 -204 2303 2119 526 287 138 25 chr3 37489887 37490242 -180546916 - HAL1 LINE L1 -2107 400 6 24 32 0 0 chr3 37490606 37490637 -180546521 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr3 37490686 37490714 -180546444 + AT_rich Low_complexity Low_complexity 1 28 0 655 212 31 111 chr3 37491216 37491442 -180545716 - MIR SINE MIR -7 255 48 526 89 13 0 chr3 37491589 37491668 -180545490 - MADE1 DNA Mariner 0 80 1 295 300 54 39 chr3 37492164 37492294 -180544864 - MIR3 SINE MIR -10 198 67 1315 260 24 61 chr3 37493156 37493291 -180543867 - L1ME3A LINE L1 -74 6096 5957 2291 105 0 3 chr3 37493291 37493585 -180543573 - AluSq SINE Alu -20 293 1 1315 260 24 61 chr3 37493585 37494018 -180543140 - L1ME3A LINE L1 -213 5957 5519 184 317 145 21 chr3 37494037 37494182 -180542976 - MIR SINE MIR -74 188 26 980 107 0 13 chr3 37494195 37494335 -180542823 + MER107 DNA MER1_type 6 145 -52 182 36 0 36 chr3 37494335 37494363 -180542795 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 402 299 147 30 chr3 37494689 37494920 -180542238 + L2 LINE L2 2990 3247 -25 964 208 26 39 chr3 37495587 37495818 -180541340 + MIR SINE MIR 35 262 0 280 333 82 6 chr3 37496137 37496296 -180540862 - MIR3 SINE MIR -25 183 13 707 288 52 30 chr3 37497423 37497870 -180539288 + LTR16A LTR ERVL 1 455 -2 193 339 32 50 chr3 37498437 37498655 -180538503 - L2 LINE L2 -379 2935 2722 273 57 0 0 chr3 37498927 37498962 -180538196 + (TG)n Simple_repeat Simple_repeat 2 36 0 189 121 0 0 chr3 37499027 37499060 -180538098 + (TCTCTG)n Simple_repeat Simple_repeat 6 38 0 199 200 0 44 chr3 37500801 37500846 -180536312 + L2 LINE L2 3230 3272 0 1574 163 100 9 chr3 37501080 37501399 -180535759 - MER7A DNA MER2_type 0 346 1 475 327 77 60 chr3 37501430 37501504 -180535654 + L2 LINE L2 2560 2631 -682 996 193 0 16 chr3 37501504 37501691 -180535467 - MER5A DNA MER1_type -1 188 5 475 327 77 60 chr3 37501691 37501836 -180535322 + L2 LINE L2 2631 2772 -541 2453 133 46 12 chr3 37501836 37502022 -180535136 + MSTA LTR MaLR 1 179 -249 1881 182 0 0 chr3 37502022 37502324 -180534834 + AluSx SINE Alu 1 302 -10 2453 133 46 12 chr3 37502324 37502549 -180534609 + MSTA LTR MaLR 179 426 -2 475 327 77 60 chr3 37502549 37503058 -180534100 + L2 LINE L2 2772 3311 -2 2815 229 34 25 chr3 37503155 37503871 -180533287 - MER21B LTR ERV1 -123 740 19 386 224 13 0 chr3 37503894 37503970 -180533188 - MER21B LTR ERV1 -774 89 13 749 249 141 61 chr3 37504197 37504923 -180532235 - LTR1B LTR ERV1 0 826 43 207 0 0 0 chr3 37505835 37505858 -180531300 + (T)n Simple_repeat Simple_repeat 1 23 0 1821 234 65 18 chr3 37505963 37506459 -180530699 + LTR40a LTR ERVL 1 519 0 316 276 26 96 chr3 37506712 37507024 -180530134 + MLT1K LTR MaLR 299 588 0 269 296 0 59 chr3 37507653 37507788 -180529370 + (TATG)n Simple_repeat Simple_repeat 2 128 0 1385 189 17 31 chr3 37509212 37509561 -180527597 - MER39 LTR ERV1 0 707 364 358 244 96 9 chr3 37509587 37509702 -180527456 - MER39 LTR ERV1 -582 125 1 373 115 0 0 chr3 37509836 37509897 -180527261 + L1MA1 LINE L1 6138 6198 -104 394 100 14 14 chr3 37510779 37510849 -180526309 + (TTCTC)n Simple_repeat Simple_repeat 1 70 0 2137 116 30 0 chr3 37510849 37511152 -180526006 - AluSq SINE Alu -1 312 1 203 259 56 0 chr3 37511419 37511473 -180525685 + L2 LINE L2 3200 3256 -16 1966 219 146 8 chr3 37511856 37511923 -180525235 + Zaphod DNA AcHobo 1 57 -3974 357 62 0 0 chr3 37511923 37511971 -180525187 + (CA)n Simple_repeat Simple_repeat 2 49 0 1966 219 146 8 chr3 37511971 37512418 -180524740 + Zaphod DNA AcHobo 57 586 -3445 771 238 121 19 chr3 37512419 37512684 -180524474 + Zaphod DNA AcHobo 3739 4030 -1 384 244 12 0 chr3 37513787 37513873 -180523285 + MER58A DNA MER1_type 4 90 -17 198 0 0 0 chr3 37513873 37513895 -180523263 + (TTA)n Simple_repeat Simple_repeat 3 24 0 16287 29 2 3 chr3 37513896 37516608 -180520550 - L1PA3 LINE L1 -16 6139 3430 2754 32 3 0 chr3 37516608 37516983 -180520175 + L1PA3 LINE L1 3034 3409 -2737 728 232 0 0 chr3 37516983 37517125 -180520033 + MER58A DNA MER1_type 83 224 0 383 317 32 39 chr3 37517267 37517559 -180519599 + L1MC4a LINE L1 7110 7351 -457 245 246 0 0 chr3 37517611 37517672 -180519486 + L1MC5 LINE L1 7333 7393 -568 303 299 23 69 chr3 37517733 37517907 -180519251 + L1MC5 LINE L1 7525 7690 -271 688 296 5 5 chr3 37518317 37518506 -180518652 - L3 LINE CR1 -756 821 633 729 189 61 33 chr3 37519384 37519564 -180517594 - AluJo SINE Alu -13 299 115 616 279 76 36 chr3 37519594 37519845 -180517313 + MIR SINE MIR 2 262 0 217 254 0 0 chr3 37519849 37519904 -180517254 + (TTA)n Simple_repeat Simple_repeat 2 56 0 279 319 64 0 chr3 37520259 37520353 -180516805 - L2 LINE L2 0 3313 3214 1163 149 14 10 chr3 37520396 37520604 -180516554 + MER2 DNA MER2_type 1 209 -136 1270 173 32 5 chr3 37520616 37520836 -180516322 + AluJb SINE Alu 35 260 -52 210 261 143 88 chr3 37520947 37521185 -180515973 - L2 LINE L2 -775 2539 2289 222 277 36 48 chr3 37521531 37521614 -180515544 + MIR3 SINE MIR 90 171 -37 23 33 0 0 chr3 37521964 37521994 -180515164 + AT_rich Low_complexity Low_complexity 1 30 0 448 272 101 22 chr3 37523002 37523199 -180513959 + MIR SINE MIR 20 230 -32 268 355 74 14 chr3 37523929 37524146 -180513012 - MIR SINE MIR -10 252 23 1893 160 54 32 chr3 37526721 37527256 -180509902 - MLT2A2 LTR ERVL -8 546 1 1902 141 31 7 chr3 37527451 37527742 -180509416 - AluSx SINE Alu -14 298 1 742 229 104 25 chr3 37527856 37528096 -180509062 + MIR SINE MIR 4 262 0 430 323 42 30 chr3 37528142 37528357 -180508801 + MIR SINE MIR 16 226 -36 333 313 140 7 chr3 37528679 37528829 -180508329 + MIR SINE MIR 44 213 -49 804 287 85 18 chr3 37528867 37529257 -180507901 - LTR16A LTR ERVL -12 438 23 3919 174 57 21 chr3 37529713 37530484 -180506674 - MER21B LTR ERV1 -49 814 16 24 0 0 0 chr3 37530820 37530844 -180506314 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr3 37531270 37531293 -180505865 + AT_rich Low_complexity Low_complexity 1 23 0 949 228 32 9 chr3 37531442 37531661 -180505497 - MER58A DNA MER1_type 0 224 1 598 268 7 7 chr3 37532260 37532402 -180504756 + MER5B DNA MER1_type 2 143 -35 1598 212 47 55 chr3 37532402 37532569 -180504589 - MLT1D LTR MaLR 0 505 338 1565 79 51 0 chr3 37532569 37532784 -180504374 - MER30 DNA MER1_type 0 230 5 1598 212 47 55 chr3 37532784 37533125 -180504033 - MLT1D LTR MaLR -167 338 1 308 286 71 0 chr3 37533485 37533597 -180503561 - MIR SINE MIR -43 219 100 387 153 163 10 chr3 37535327 37535425 -180501733 + ERVL LTR ERVL 5652 5764 0 2047 118 0 0 chr3 37535426 37535698 -180501460 - AluSx SINE Alu -2 310 39 634 245 58 1 chr3 37536269 37536453 -180500705 + MIR SINE MIR 14 204 -58 237 235 0 0 chr3 37536457 37536542 -180500616 + (TA)n Simple_repeat Simple_repeat 2 86 0 216 226 81 0 chr3 37536599 37536661 -180500497 + MIR SINE MIR 196 262 0 218 320 0 48 chr3 37537933 37538058 -180499100 - MIR SINE MIR -56 206 88 2799 141 58 14 chr3 37539794 37540090 -180497068 - MLT2B1 LTR ERVL 0 520 192 4392 82 0 15 chr3 37540090 37540686 -180496472 - L1PA8A LINE L1 0 6131 5545 2799 141 58 14 chr3 37540686 37540887 -180496271 - MLT2B1 LTR ERVL -328 192 1 662 233 68 6 chr3 37541138 37541301 -180495857 - MER45A DNA AcHobo -4 174 2 441 308 121 11 chr3 37541331 37541604 -180495554 - MLT1J2 LTR MaLR -125 325 23 23 0 0 0 chr3 37541772 37541795 -180495363 + AT_rich Low_complexity Low_complexity 1 23 0 718 222 6 19 chr3 37542829 37542991 -180494167 + MER58B DNA MER1_type 182 341 0 2101 109 3 26 chr3 37545416 37545729 -180491429 - AluSx SINE Alu -6 306 1 348 200 271 50 chr3 37545807 37545925 -180491233 - MER5A DNA MER1_type -10 179 24 261 0 0 0 chr3 37545925 37545954 -180491204 + (CTG)n Simple_repeat Simple_repeat 1 29 0 348 200 271 50 chr3 37545954 37545975 -180491183 - MER5A DNA MER1_type -165 24 9 440 259 36 0 chr3 37546046 37546158 -180491000 + MIR SINE MIR 45 160 -102 358 308 33 0 chr3 37546190 37546281 -180490877 + L2 LINE L2 3220 3313 0 212 391 11 0 chr3 37546942 37547029 -180490129 - L2 LINE L2 -27 3245 3158 385 263 20 0 chr3 37547162 37547261 -180489897 + L2 LINE L2 3212 3312 -1 279 0 0 0 chr3 37547854 37547885 -180489273 + (A)n Simple_repeat Simple_repeat 1 31 0 2663 94 11 5 chr3 37547978 37548349 -180488809 + THE1C LTR MaLR 1 373 -2 222 300 20 50 chr3 37549133 37549233 -180487925 + MIR3 SINE MIR 66 162 -46 2580 64 0 0 chr3 37551477 37551788 -180485370 - AluY SINE Alu 0 311 1 31 26 0 0 chr3 37552945 37552983 -180484175 + AT_rich Low_complexity Low_complexity 1 38 0 396 242 42 0 chr3 37554483 37554603 -180482555 + MER94 DNA DNA 2 126 -8 190 355 120 25 chr3 37555032 37555232 -180481926 - L3 LINE CR1 -21 1556 1338 685 332 72 4 chr3 37555280 37555557 -180481601 - L3 LINE CR1 -239 1338 1043 441 330 10 95 chr3 37555568 37555768 -180481390 + MER91A DNA MER1_type 1 183 -13 413 251 19 111 chr3 37555792 37555999 -180481159 - L3 LINE CR1 -543 1034 847 355 346 88 15 chr3 37556037 37556242 -180480916 - L3 LINE CR1 -977 600 381 1016 251 70 42 chr3 37557107 37557493 -180479665 - MLT1I LTR MaLR -4 405 9 334 317 44 63 chr3 37557683 37557954 -180479204 + HAL1 LINE L1 1113 1378 -1129 215 260 10 0 chr3 37557967 37558063 -180479095 + (TA)n Simple_repeat Simple_repeat 2 98 0 2477 110 38 5 chr3 37558394 37558766 -180478392 - L1PA11 LINE L1 -2 6172 5789 609 62 0 0 chr3 37558767 37558848 -180478310 - L1PA10 LINE L1 -299 5869 5789 593 74 0 0 chr3 37558849 37558930 -180478228 - L1PA13 LINE L1 -294 5869 5789 3188 86 0 0 chr3 37558931 37559373 -180477785 - L1PA10 LINE L1 -299 5869 5428 * 12143 209 13 37 chr3 37559369 37563211 -180473947 - L1PA12 LINE L1 -2451 5133 5 404 259 185 0 chr3 37563347 37563509 -180473649 - MIR SINE MIR -58 204 13 349 285 33 46 chr3 37563736 37563960 -180473198 + L1MC/D LINE L1 5288 5508 -851 189 0 0 0 chr3 37563970 37563991 -180473167 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 276 30 0 0 chr3 37563990 37564023 -180473135 + (CA)n Simple_repeat Simple_repeat 2 34 0 193 123 27 68 chr3 37564206 37564279 -180472879 + GA-rich Low_complexity Low_complexity 3 72 0 671 276 12 6 chr3 37564279 37564449 -180472709 + MER63A DNA MER1_type 39 209 -1 250 312 37 28 chr3 37564895 37565004 -180472154 + L2 LINE L2 3189 3298 -15 187 218 20 0 chr3 37565937 37566038 -180471120 + C-rich Low_complexity Low_complexity 2 104 0 342 67 0 0 chr3 37566611 37566656 -180470502 + (CA)n Simple_repeat Simple_repeat 2 46 0 2127 132 12 15 chr3 37567239 37567579 -180469579 - MER44D DNA MER2_type 0 609 1 614 245 7 7 chr3 37569014 37569169 -180467989 - MIR SINE MIR 0 262 108 314 313 71 46 chr3 37569180 37569379 -180467779 - MIR SINE MIR -31 231 29 579 259 78 10 chr3 37569472 37569665 -180467493 + Charlie8 DNA MER1_type 15 220 -2197 192 182 0 0 chr3 37570337 37570370 -180466788 - MIR SINE MIR -63 145 113 189 0 0 0 chr3 37573576 37573597 -180463561 + (TA)n Simple_repeat Simple_repeat 2 22 0 203 189 0 0 chr3 37573630 37573667 -180463491 + (TA)n Simple_repeat Simple_repeat 1 37 0 778 289 62 18 chr3 37573727 37574153 -180463005 - LTR16C LTR ERVL 0 491 1 21 0 0 0 chr3 37575257 37575278 -180461880 + AT_rich Low_complexity Low_complexity 1 21 0 249 362 115 6 chr3 37576414 37576588 -180460570 - L3 LINE CR1 -73 1504 1312 235 293 0 0 chr3 37576591 37576649 -180460509 - Charlie8 DNA MER1_type -999 1418 1361 405 238 160 70 chr3 37576728 37576972 -180460186 - Charlie8 DNA MER1_type -2141 276 11 296 174 47 12 chr3 37577039 37577125 -180460033 + MLT2B3 LTR ERVL 5 93 -461 898 221 81 94 chr3 37577496 37577867 -180459291 + MLT2B3 LTR ERVL 83 448 -106 7855 164 76 20 chr3 37577873 37578268 -180458890 + MSTB-int LTR MaLR 1 372 -1279 2213 125 0 3 chr3 37578268 37578571 -180458587 + AluSx SINE Alu 3 304 -8 7855 164 76 20 chr3 37578571 37579738 -180457420 + MSTB-int LTR MaLR 372 1651 0 1158 146 11 100 chr3 37579738 37580019 -180457139 + MSTB LTR MaLR 1 256 -170 627 272 47 18 chr3 37580278 37580557 -180456601 + LTR33 LTR ERVL 3 258 -265 183 146 0 0 chr3 37581791 37581832 -180455326 + (T)n Simple_repeat Simple_repeat 1 41 0 3045 51 0 0 chr3 37581834 37582207 -180454951 - L1PA4 LINE L1 -3 6152 5780 1088 193 0 37 chr3 37582509 37582727 -180454431 + MER20 DNA MER1_type 9 218 -1 395 324 126 14 chr3 37583808 37584030 -180453128 - MLT1K LTR MaLR -19 569 323 490 302 22 22 chr3 37584473 37584612 -180452546 - MER5B DNA MER1_type -2 176 38 240 339 0 0 chr3 37585241 37585303 -180451855 + C-rich Low_complexity Low_complexity 1 62 0 1063 233 51 6 chr3 37585305 37585810 -180451348 - L1M4 LINE L1 -2467 3679 3119 1470 223 24 50 chr3 37586097 37586643 -180450515 - L1M4 LINE L1 -3068 3078 2547 1241 236 87 77 chr3 37587296 37587797 -180449361 - MLT1H LTR MaLR 0 549 45 211 333 0 0 chr3 37588048 37588117 -180449041 + GA-rich Low_complexity Low_complexity 4 72 0 427 252 129 43 chr3 37588819 37588958 -180448200 - L2 LINE L2 0 3272 3122 316 264 11 0 chr3 37590162 37590253 -180446905 - MLT1I LTR MaLR 0 409 318 719 246 0 31 chr3 37590885 37591076 -180446082 - MER20 DNA MER1_type 0 219 35 472 174 43 61 chr3 37591304 37591419 -180445739 - MIR3 SINE MIR -5 203 91 2171 123 0 19 chr3 37592038 37592354 -180444804 + AluSg SINE Alu 1 310 0 308 261 109 0 chr3 37592399 37592518 -180444640 - MER117 DNA MER1_type -36 161 30 195 42 0 0 chr3 37592640 37592664 -180444494 + (T)n Simple_repeat Simple_repeat 1 24 0 285 130 0 0 chr3 37593053 37593099 -180444059 - MLT2B1 LTR ERVL -8 512 467 308 102 11 34 chr3 37593114 37593202 -180443956 + (TA)n Simple_repeat Simple_repeat 2 87 0 1589 215 89 35 chr3 37593202 37593663 -180443495 - MLT2B1 LTR ERVL -34 486 1 23 0 0 0 chr3 37594255 37594278 -180442880 + GC_rich Low_complexity Low_complexity 1 23 0 292 172 20 40 chr3 37594296 37594395 -180442763 + C-rich Low_complexity Low_complexity 2 98 0 692 221 15 0 chr3 37595001 37595132 -180442026 + MER5A DNA MER1_type 1 133 -56 913 122 0 0 chr3 37595135 37595266 -180441892 - AluSc SINE Alu -4 305 175 325 206 32 0 chr3 37595266 37595329 -180441829 + MER5A DNA MER1_type 125 189 0 263 394 11 23 chr3 37595698 37595873 -180441285 + L2 LINE L2 270 442 -2872 21 36 0 0 chr3 37596818 37596846 -180440312 + AT_rich Low_complexity Low_complexity 1 28 0 350 267 62 2 chr3 37597103 37597278 -180439880 - L1ME LINE L1 -306 5815 5622 305 98 78 0 chr3 37597460 37597511 -180439647 - MLT2A1 LTR ERVL 0 453 399 265 60 100 10 chr3 37597514 37597614 -180439544 + (TA)n Simple_repeat Simple_repeat 1 109 0 2548 89 2 68 chr3 37597615 37598041 -180439117 - MLT2A1 LTR ERVL -44 400 3 428 276 8 8 chr3 37598173 37598296 -180438862 - MIR SINE MIR -4 258 136 229 176 35 94 chr3 37598298 37598383 -180438775 - MER116 DNA Mariner 0 80 1 332 284 9 28 chr3 37598405 37598514 -180438644 - MIR SINE MIR -154 108 2 211 331 66 50 chr3 37598635 37598756 -180438402 + L2 LINE L2 3138 3260 -12 356 235 139 116 chr3 37599763 37600150 -180437008 - MLT1L LTR MaLR -4 611 216 1402 153 36 4 chr3 37600759 37601040 -180436118 - L1MA8 LINE L1 0 6291 6002 3568 122 22 52 chr3 37601181 37601391 -180435767 - L1MA8 LINE L1 -289 6002 5787 252 0 0 0 chr3 37601391 37601419 -180435739 + (TA)n Simple_repeat Simple_repeat 1 28 0 3568 122 22 52 chr3 37601419 37601886 -180435272 - L1MA8 LINE L1 -504 5787 5345 602 281 44 0 chr3 37601888 37602023 -180435135 - FRAM SINE Alu -30 146 6 1275 127 36 12 chr3 37602027 37602279 -180434879 - L1 LINE L1 -779 5367 5110 2366 147 3 3 chr3 37605210 37605585 -180431573 + THE1C LTR MaLR 1 375 0 2247 111 16 5 chr3 37605585 37606161 -180430997 + THE1C-int LTR MaLR 1 643 -937 665 226 44 0 chr3 37606247 37606406 -180430752 - MER3 DNA MER1_type -29 180 15 17722 146 8 7 chr3 37606475 37609862 -180427296 + L1PA11 LINE L1 2087 5477 -697 503 114 0 13 chr3 37609862 37609941 -180427217 - MADE1 DNA Mariner 0 80 3 17722 146 8 7 chr3 37609941 37610639 -180426519 + L1PA11 LINE L1 5477 6173 -1 594 323 25 0 chr3 37610639 37610840 -180426318 + MIR SINE MIR 47 252 -10 2017 149 83 13 chr3 37610861 37611257 -180425901 - MSTB1 LTR MaLR 0 432 9 292 260 50 10 chr3 37611399 37611499 -180425659 - MIR SINE MIR -5 257 154 500 267 105 17 chr3 37611665 37611837 -180425321 - MIR SINE MIR -56 206 20 21 71 0 0 chr3 37611879 37611921 -180425237 + AT_rich Low_complexity Low_complexity 1 42 0 242 317 35 45 chr3 37611935 37612137 -180425021 - L2 LINE L2 -227 3086 2887 572 233 17 57 chr3 37612159 37612335 -180424823 - MER97c DNA MER1_type? -917 173 5 364 284 69 78 chr3 37614753 37614971 -180422187 + MIR SINE MIR 44 259 -3 738 296 40 20 chr3 37615684 37615934 -180421224 - MIR SINE MIR 0 262 8 41 0 0 0 chr3 37616118 37616159 -180420999 + AT_rich Low_complexity Low_complexity 1 41 0 960 252 33 36 chr3 37616598 37616931 -180420227 + LTR16C LTR ERVL 153 484 -7 2400 88 3 0 chr3 37617162 37617469 -180419689 + AluY SINE Alu 1 308 -3 23 68 0 0 chr3 37618579 37618623 -180418535 + AT_rich Low_complexity Low_complexity 1 44 0 30 0 0 0 chr3 37619596 37619626 -180417532 + AT_rich Low_complexity Low_complexity 1 30 0 822 200 91 0 chr3 37620037 37620202 -180416956 + Tigger3(Golem) DNA MER2_type 2 181 -2848 * 4278 122 74 32 chr3 37620200 37620379 -180416779 + Tigger3(Golem) DNA MER2_type 2141 2311 -718 372 22 0 0 chr3 37620379 37620424 -180416734 + (TG)n Simple_repeat Simple_repeat 2 46 0 4278 122 74 32 chr3 37620424 37621096 -180416062 + Tigger3(Golem) DNA MER2_type 2311 3028 -1 194 320 0 39 chr3 37621337 37621415 -180415743 + L2 LINE L2 3234 3308 -5 300 257 0 14 chr3 37622005 37622075 -180415083 - L2 LINE L2 0 3272 3204 1836 144 16 35 chr3 37622704 37623016 -180414142 - AluJo SINE Alu -4 308 3 523 295 145 5 chr3 37624965 37625158 -180412000 - MIR SINE MIR -11 251 32 321 302 0 21 chr3 37625177 37625273 -180411885 + MER5B DNA MER1_type 79 172 -6 393 234 73 68 chr3 37628288 37628541 -180408617 - MLT1K LTR MaLR -6 609 328 181 291 9 100 chr3 37628606 37628716 -180408442 - MIR3 SINE MIR -27 181 82 2122 139 3 0 chr3 37628823 37629125 -180408033 + AluSx SINE Alu 1 303 -9 505 271 14 21 chr3 37629167 37629448 -180407710 + MST-int LTR MaLR 433 711 -940 2071 135 3 19 chr3 37631181 37631493 -180405665 - AluSx SINE Alu 0 312 6 764 295 123 50 chr3 37631807 37632316 -180404842 - L2 LINE L2 -8 3305 2761 1558 171 10 106 chr3 37632316 37632720 -180404438 - MLT1A1 LTR MaLR 0 365 1 764 295 123 50 chr3 37632720 37632762 -180404396 - L2 LINE L2 -552 2761 2723 2090 143 32 24 chr3 37632902 37633204 -180403954 + MSTC LTR MaLR 54 362 -66 2060 109 0 3 chr3 37633204 37633511 -180403647 + AluSq SINE Alu 1 306 0 2090 143 32 24 chr3 37633511 37633579 -180403579 + MSTC LTR MaLR 362 428 0 429 157 36 12 chr3 37633880 37633963 -180403195 - MER5A DNA MER1_type -2 187 103 575 279 59 36 chr3 37634939 37635158 -180402000 + MIR SINE MIR 10 233 -29 193 358 136 19 chr3 37636932 37637094 -180400064 + MIR SINE MIR 20 200 -62 228 67 0 0 chr3 37637710 37637740 -180399418 + (CAT)n Simple_repeat Simple_repeat 2 31 0 426 357 94 14 chr3 37637796 37638009 -180399149 - L2 LINE L2 -4 3268 3039 1004 185 57 64 chr3 37638101 37638415 -180398743 - MER33 DNA MER1_type 0 324 13 351 316 0 0 chr3 37638420 37638499 -180398659 - L2 LINE L2 -33 3239 3161 696 334 72 47 chr3 37638512 37639173 -180397985 - L2 LINE L2 -268 3004 2332 963 309 116 9 chr3 37639175 37639622 -180397536 - LTR33 LTR ERVL -26 495 1 1200 53 12 6 chr3 37640107 37640277 -180396881 + (TTTC)n Simple_repeat Simple_repeat 4 174 0 1148 103 6 0 chr3 37640296 37640470 -180396688 + (TTTC)n Simple_repeat Simple_repeat 3 177 0 194 324 41 90 chr3 37641607 37641752 -180395406 - L2 LINE L2 -182 3090 2953 572 196 69 123 chr3 37641847 37642213 -180394945 + MLT1H LTR MaLR 129 542 0 374 0 0 21 chr3 37642293 37642340 -180394818 + (TA)n Simple_repeat Simple_repeat 1 46 0 930 199 21 5 chr3 37642764 37642950 -180394208 - MER5A DNA MER1_type 0 189 1 1877 178 55 15 chr3 37642969 37643368 -180393790 + MLT2C2 LTR ERVL 1 415 -49 191 88 29 0 chr3 37643480 37643514 -180393644 + (GA)n Simple_repeat Simple_repeat 2 36 0 378 107 0 0 chr3 37643576 37643632 -180393526 + (A)n Simple_repeat Simple_repeat 1 56 0 203 364 50 16 chr3 37643639 37643760 -180393398 + L2 LINE L2 2934 3058 -214 242 250 0 16 chr3 37644168 37644232 -180392926 - L2 LINE L2 -1 3271 3209 961 255 137 29 chr3 37644924 37645304 -180391854 + LTR16C LTR ERVL 71 491 0 466 266 68 34 chr3 37645862 37646069 -180391089 + L2 LINE L2 2593 2806 -508 299 270 139 17 chr3 37646062 37646177 -180390981 + L2 LINE L2 3011 3139 -174 * 1381 228 111 8 chr3 37646230 37646599 -180390559 - L1ME1 LINE L1 -283 5883 5477 2068 171 50 16 chr3 37646730 37647214 -180389944 - L1MC2 LINE L1 -6 6338 5839 188 265 0 0 chr3 37647214 37647258 -180389900 - MER5B DNA MER1_type -128 50 7 433 223 39 85 chr3 37647265 37647395 -180389763 + L2 LINE L2 3190 3313 0 216 0 0 0 chr3 37647955 37647979 -180389179 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 266 270 90 0 chr3 37648064 37648164 -180388994 + MIR3 SINE MIR 99 207 -1 274 353 147 0 chr3 37648465 37648581 -180388577 + L2 LINE L2 3136 3268 -4 216 0 0 0 chr3 37648752 37648776 -180388382 + (T)n Simple_repeat Simple_repeat 1 24 0 254 275 145 22 chr3 37648851 37648989 -180388169 - MIR SINE MIR -29 233 79 261 338 103 0 chr3 37649129 37649265 -180387893 + MIR SINE MIR 112 261 -1 26 30 0 0 chr3 37649856 37649889 -180387269 + AT_rich Low_complexity Low_complexity 1 33 0 1659 286 59 29 chr3 37649891 37650942 -180386216 - L1ME3A LINE L1 -52 6118 5035 4089 156 37 32 chr3 37650942 37651723 -180385435 - LTR1 LTR ERV1 0 785 1 863 121 52 81 chr3 37651723 37651896 -180385262 - HUERS-P2 LTR ERV1 0 3088 2921 1162 130 5 5 chr3 37652070 37652262 -180384896 - Tigger1 DNA MER2_type -1186 1232 1041 8310 125 38 8 chr3 37653158 37654484 -180382674 - HUERS-P2 LTR ERV1 -249 2839 1474 3206 162 38 29 chr3 37654497 37655157 -180382001 - LTR1 LTR ERV1 -119 666 1 635 282 16 12 chr3 37655162 37655410 -180381748 - L1ME3A LINE L1 -1115 5031 4783 363 319 49 11 chr3 37655415 37655678 -180381480 - L1ME3A LINE L1 -1402 4744 4472 1032 280 73 62 chr3 37655826 37656930 -180380228 - L1ME3A LINE L1 -1744 4402 3286 702 210 114 54 chr3 37657046 37657397 -180379761 - L1ME3 LINE L1 -15 6541 6174 13259 148 22 11 chr3 37657397 37657592 -180379566 - Tigger1 DNA MER2_type -1 2417 2226 1705 126 19 4 chr3 37657592 37657863 -180379295 - L1PB1 LINE L1 -1 6150 5876 13259 148 22 11 chr3 37657863 37659754 -180377404 - Tigger1 DNA MER2_type -192 2226 301 237 65 0 0 chr3 37659754 37659785 -180377373 + (CA)n Simple_repeat Simple_repeat 2 32 0 13259 148 22 11 chr3 37659785 37660062 -180377096 - Tigger1 DNA MER2_type -2117 301 28 1184 261 46 41 chr3 37660097 37661199 -180375959 - L1ME3 LINE L1 -394 6162 5064 253 189 94 9 chr3 37661246 37661352 -180375806 - L1ME3 LINE L1 -4581 1959 1845 608 202 50 81 chr3 37661728 37661926 -180375232 + MLT1I LTR MaLR 217 408 -1 308 277 92 34 chr3 37662148 37662267 -180374891 - L2 LINE L2 -243 3029 2904 480 220 74 150 chr3 37662295 37662656 -180374502 + LTR16A1 LTR ERVL 1 317 -140 1034 175 46 136 chr3 37662656 37663091 -180374067 - MSTD LTR MaLR 0 396 1 480 220 74 150 chr3 37663091 37663215 -180373943 + LTR16A1 LTR ERVL 317 449 -8 259 293 30 0 chr3 37663263 37663362 -180373796 - MER103 DNA DNA -24 142 41 305 350 25 0 chr3 37663389 37663509 -180373649 + MIR SINE MIR 20 142 -120 1428 240 120 34 chr3 37663519 37664102 -180373056 + L1ME1 LINE L1 5530 6162 -4 224 246 217 0 chr3 37664221 37664290 -180372868 + MIR SINE MIR 153 236 -26 21 0 0 0 chr3 37664345 37664366 -180372792 + AT_rich Low_complexity Low_complexity 1 21 0 956 67 0 15 chr3 37664388 37664523 -180372635 - L1PA4 LINE L1 0 6155 6023 576 263 43 14 chr3 37666256 37666465 -180370693 - L1ME1 LINE L1 -7 6159 5945 368 244 67 88 chr3 37667132 37667325 -180369833 - MIR SINE MIR -2 260 72 363 106 0 0 chr3 37667509 37667575 -180369583 + (TG)n Simple_repeat Simple_repeat 2 67 0 288 130 0 0 chr3 37668078 37668124 -180369034 + (TCCC)n Simple_repeat Simple_repeat 3 48 0 264 59 0 0 chr3 37668126 37668160 -180368998 + (TG)n Simple_repeat Simple_repeat 1 34 0 242 351 18 18 chr3 37669700 37669811 -180367347 + MIR SINE MIR 30 140 -68 393 217 12 0 chr3 37669937 37670020 -180367138 + MER5A DNA MER1_type 26 109 -80 745 247 30 6 chr3 37670074 37670240 -180366918 + MER5A DNA MER1_type 2 171 -18 231 239 0 15 chr3 37670333 37670400 -180366758 + (TATAA)n Simple_repeat Simple_repeat 5 70 0 228 250 12 12 chr3 37670499 37670579 -180366579 - LTR67 LTR ERVL -20 537 458 210 239 36 29 chr3 37672155 37672298 -180364860 + (TTATA)n Simple_repeat Simple_repeat 1 141 -387 1581 134 78 34 chr3 37672298 37672618 -180364540 - MER44D DNA MER2_type -1 608 5 210 239 36 29 chr3 37672618 37672680 -180364478 + (TTATA)n Simple_repeat Simple_repeat 141 528 0 227 111 48 16 chr3 37672684 37672747 -180364411 + (TA)n Simple_repeat Simple_repeat 1 65 0 204 255 226 69 chr3 37675759 37675861 -180361297 - MIR3 SINE MIR -49 159 42 464 139 38 0 chr3 37675874 37675953 -180361205 + MLT1F LTR MaLR 1 82 -460 1516 186 23 39 chr3 37676145 37676452 -180360706 - AluJo SINE Alu -6 306 5 494 277 122 29 chr3 37676843 37677668 -180359490 - L1MCc LINE L1 -4697 2246 1279 268 288 9 36 chr3 37678497 37678608 -180358550 - MIR SINE MIR -33 229 122 753 294 87 4 chr3 37678734 37678965 -180358193 + MIR SINE MIR 11 260 -2 219 195 0 0 chr3 37679039 37679080 -180358078 + L2 LINE L2 3186 3226 -87 1474 237 30 40 chr3 37679806 37680271 -180356887 - MLT1C LTR MaLR -1 466 1 227 308 25 101 chr3 37680586 37680872 -180356286 - L2 LINE L2 -205 3067 2804 1061 202 0 5 chr3 37680979 37681182 -180355976 - MLT1A1 LTR MaLR -29 336 135 1596 225 22 22 chr3 37681182 37681547 -180355611 - MLT1A1 LTR MaLR 0 365 1 238 316 91 73 chr3 37681553 37681895 -180355263 - L2 LINE L2 -528 2786 2439 303 164 0 0 chr3 37682658 37682719 -180354439 + (TGGA)n Simple_repeat Simple_repeat 1 61 0 2402 136 114 50 chr3 37682720 37683204 -180353954 - MLT2B3 LTR ERVL -39 515 1 227 272 54 88 chr3 37683678 37683825 -180353333 + MIR SINE MIR 120 261 -1 266 194 32 16 chr3 37684808 37684870 -180352288 + MIR SINE MIR 93 155 -107 1121 216 75 48 chr3 37684998 37685437 -180351721 - LTR37B LTR ERV1 -3 465 15 1603 164 27 27 chr3 37685453 37685745 -180351413 - AluJb SINE Alu -19 293 2 21 36 0 0 chr3 37688102 37688130 -180349028 + AT_rich Low_complexity Low_complexity 1 28 0 287 336 109 0 chr3 37688236 37688465 -180348693 - L1ME LINE L1 -351 5819 5566 422 263 78 37 chr3 37688470 37688687 -180348471 - L1ME LINE L1 -861 5285 5060 263 247 130 0 chr3 37689175 37689252 -180347906 - L2 LINE L2 0 3313 3227 650 348 166 28 chr3 37689273 37690011 -180347147 - L2 LINE L2 -248 3065 2223 9728 138 9 1 chr3 37690323 37692703 -180344455 + L1PA12 LINE L1 3656 6046 -122 422 241 45 33 chr3 37692894 37693139 -180344019 + L1PA12 LINE L1 5921 6168 0 231 375 53 46 chr3 37693633 37693785 -180343373 - L2 LINE L2 -22 3250 3098 185 108 27 0 chr3 37693884 37693921 -180343237 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 619 251 117 14 chr3 37694227 37694450 -180342708 - MLT1J2 LTR MaLR -204 246 1 449 246 27 18 chr3 37694552 37694662 -180342496 - MIR SINE MIR -149 113 3 322 292 144 35 chr3 37694746 37694948 -180342210 - L1ME LINE L1 -451 5670 5447 358 196 22 0 chr3 37695279 37695371 -180341787 + (CATATA)n Simple_repeat Simple_repeat 2 95 0 931 184 56 0 chr3 37695787 37695966 -180341192 - MER5A DNA MER1_type 0 189 1 1134 229 5 0 chr3 37697622 37697840 -180339318 - MER20 DNA MER1_type 0 219 1 239 345 104 49 chr3 37698014 37698379 -180338779 - LTR16C LTR ERVL -34 457 73 182 222 56 0 chr3 37699428 37699482 -180337676 - MIR3 SINE MIR -1 207 151 632 245 38 33 chr3 37699612 37699796 -180337362 - MER63A DNA MER1_type -25 185 1 277 171 72 90 chr3 37701647 37701758 -180335400 + MER103 DNA DNA 12 120 -46 926 215 92 0 chr3 37701830 37702025 -180335133 + MER58A DNA MER1_type 12 224 0 722 249 107 29 chr3 37702688 37703151 -180334007 - MLT1F1 LTR MaLR -3 564 1 382 240 42 0 chr3 37703289 37703385 -180333773 - MER91B DNA MER1_type -1 189 90 322 235 78 41 chr3 37703402 37703522 -180333636 - MER91B DNA MER1_type -60 130 1 230 323 15 0 chr3 37703718 37703783 -180333375 + L2 LINE L2 3142 3207 -65 230 283 25 67 chr3 37703840 37703960 -180333198 - L2 LINE L2 -95 3218 3104 256 377 23 0 chr3 37704508 37704638 -180332520 + L3b LINE CR1 1104 1236 -347 423 284 148 12 chr3 37706938 37707100 -180330058 - MER5A DNA MER1_type -5 184 1 204 316 51 31 chr3 37708175 37708273 -180328885 - MIR3 SINE MIR 0 208 109 263 368 11 0 chr3 37708706 37708793 -180328365 + L2 LINE L2 2881 2968 -304 436 319 60 32 chr3 37708970 37709221 -180327937 - MLT1L LTR MaLR -192 423 103 1846 130 0 0 chr3 37709486 37709747 -180327411 - AluY SINE Alu -16 295 35 486 338 45 40 chr3 37709751 37709844 -180327314 - MIR SINE MIR -21 241 150 1691 147 29 33 chr3 37709844 37709969 -180327189 + AluSc SINE Alu 1 125 -184 207 0 0 0 chr3 37709969 37709992 -180327166 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1691 147 29 33 chr3 37709992 37710172 -180326986 + AluSc SINE Alu 125 305 -4 486 338 45 40 chr3 37710172 37710300 -180326858 - MIR SINE MIR -112 150 19 1194 52 35 0 chr3 37710599 37710771 -180326387 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 384 250 19 10 chr3 37710771 37710875 -180326283 + CT-rich Low_complexity Low_complexity 2 106 0 1297 261 4 4 chr3 37711007 37711279 -180325879 + MLT1E LTR MaLR 314 585 -8 303 248 99 75 chr3 37711570 37711731 -180325427 + LTR33A LTR ERVL 21 185 -338 491 238 184 12 chr3 37711816 37711984 -180325174 - MER3 DNA MER1_type -12 197 1 442 263 113 33 chr3 37711998 37712211 -180324947 + LTR33A LTR ERVL 294 523 0 1389 206 67 75 chr3 37712245 37712351 -180324807 - MLT1F1 LTR MaLR 0 567 462 2181 113 0 0 chr3 37712351 37712635 -180324523 + AluSx SINE Alu 1 284 -28 1389 206 67 75 chr3 37712635 37712655 -180324503 - MLT1F1 LTR MaLR -105 462 443 378 0 0 0 chr3 37712655 37712697 -180324461 + (CAT)n Simple_repeat Simple_repeat 2 43 0 1389 206 67 75 chr3 37712697 37712958 -180324200 - MLT1F1 LTR MaLR -124 443 182 465 338 26 7 chr3 37713031 37713185 -180323973 - MLT1F1 LTR MaLR -383 159 3 21 36 0 0 chr3 37714187 37714215 -180322943 + AT_rich Low_complexity Low_complexity 1 28 0 216 299 0 26 chr3 37714664 37714741 -180322417 + CT-rich Low_complexity Low_complexity 4 78 0 245 339 62 9 chr3 37715082 37715194 -180321964 + L2 LINE L2 3150 3267 -5 3593 194 56 19 chr3 37715381 37715985 -180321173 + L1MA9 LINE L1 4428 5077 -1069 2831 13 0 0 chr3 37715985 37716295 -180320863 - AluYb8 SINE Alu -8 310 1 3593 194 56 19 chr3 37716295 37716581 -180320577 + L1MA9 LINE L1 5077 5351 -795 1332 115 86 0 chr3 37716875 37717084 -180320074 - MER30 DNA MER1_type 0 230 4 3681 191 85 16 chr3 37717196 37718069 -180319089 + L1MA9 LINE L1 5349 6281 -31 2059 103 4 11 chr3 37718088 37718393 -180318765 - AluSc SINE Alu 0 303 1 773 238 52 40 chr3 37719882 37719970 -180317188 + MIR SINE MIR 3 88 -174 1730 169 13 10 chr3 37719970 37720272 -180316886 - AluJb SINE Alu -7 305 3 773 238 52 40 chr3 37720272 37720431 -180316727 + MIR SINE MIR 88 253 -9 2098 120 0 3 chr3 37720459 37720789 -180316369 - AluSq SINE Alu 0 329 1 1241 227 40 0 chr3 37720822 37721095 -180316063 - LTR16A1 LTR ERVL -5 452 169 474 161 137 16 chr3 37722330 37722454 -180314704 + L1MA9 LINE L1 5126 5264 -882 1305 181 69 20 chr3 37722454 37722533 -180314625 + L1MA9 LINE L1 5698 5772 -540 468 0 0 0 chr3 37722533 37722585 -180314573 + (CA)n Simple_repeat Simple_repeat 2 53 0 1305 181 69 20 chr3 37722585 37722808 -180314350 + L1MA9 LINE L1 5772 6015 -297 4658 181 126 88 chr3 37722953 37723502 -180313656 - L1MC3 LINE L1 -1 7784 7257 230 286 18 71 chr3 37723502 37723614 -180313544 - MLT1F1 LTR MaLR -427 140 35 4658 181 126 88 chr3 37723614 37724501 -180312657 - L1MC3 LINE L1 -528 7257 6179 375 226 97 45 chr3 37724682 37724837 -180312321 + MIR SINE MIR 53 215 -47 411 21 0 0 chr3 37725559 37725607 -180311551 + (CA)n Simple_repeat Simple_repeat 1 48 0 194 229 16 82 chr3 37725795 37725856 -180311302 + MIR3 SINE MIR 113 169 -39 380 217 50 25 chr3 37726957 37727077 -180310081 + MER103 DNA DNA 27 149 -17 656 286 168 58 chr3 37727128 37727570 -180309588 - MLT1G1 LTR MaLR -8 534 68 482 259 9 0 chr3 37727730 37727842 -180309316 - MER97a DNA MER1_type? -712 182 70 874 131 74 6 chr3 37727844 37728019 -180309139 - MER53 DNA DNA 0 189 3 465 362 63 5 chr3 37728135 37728342 -180308816 + MIR SINE MIR 20 238 -24 249 354 7 14 chr3 37728889 37729033 -180308125 + C-rich Low_complexity Low_complexity 2 144 0 609 171 0 0 chr3 37729185 37729302 -180307856 + CT-rich Low_complexity Low_complexity 2 118 0 21 0 0 0 chr3 37730094 37730115 -180307043 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr3 37730939 37730967 -180306191 + AT_rich Low_complexity Low_complexity 1 28 0 509 277 189 6 chr3 37731395 37731731 -180305427 + LTR33A LTR ERVL 67 504 -19 2496 138 33 24 chr3 37732316 37732773 -180304385 - L1MA4 LINE L1 0 6300 5840 460 224 219 0 chr3 37732964 37733129 -180304029 - MIR SINE MIR -1 261 67 13970 158 24 36 chr3 37734788 37735798 -180301360 - L1 LINE L1 -1886 5679 4658 204 40 0 0 chr3 37735798 37735823 -180301335 + (TC)n Simple_repeat Simple_repeat 1 25 0 2037 122 0 0 chr3 37735823 37736101 -180301057 - AluSx SINE Alu -32 280 3 13970 158 24 36 chr3 37736101 37739067 -180298091 - L1 LINE L1 -2906 4659 1760 225 0 0 0 chr3 37739067 37739092 -180298066 + (TC)n Simple_repeat Simple_repeat 2 26 0 13970 158 24 36 chr3 37739092 37739529 -180297629 - L1 LINE L1 -5805 1760 1319 711 265 89 124 chr3 37739783 37740220 -180296938 + MLT1G LTR MaLR 15 436 -106 231 114 0 0 chr3 37740225 37740260 -180296898 + MLT1G LTR MaLR 556 590 0 488 268 73 92 chr3 37740636 37740950 -180296208 + MLT1I LTR MaLR 79 386 -23 232 239 15 15 chr3 37741303 37741370 -180295788 - L1MC5 LINE L1 -78 7883 7817 527 264 8 0 chr3 37741586 37741715 -180295443 - MER94 DNA DNA -1 133 4 697 251 29 11 chr3 37741893 37742068 -180295090 - MER45A DNA AcHobo 0 178 1 211 329 25 13 chr3 37742255 37742334 -180294824 - MIR SINE MIR -181 81 2 569 246 99 37 chr3 37743170 37743361 -180293797 + MIR SINE MIR 12 214 -48 249 378 0 0 chr3 37744286 37744360 -180292798 + ORSL DNA AcHobo 202 275 0 1078 188 28 86 chr3 37744518 37744842 -180292316 - MER46C DNA MER2_type -32 306 2 280 333 19 19 chr3 37744906 37745014 -180292144 - MIR SINE MIR -108 154 47 192 40 0 0 chr3 37745836 37745861 -180291297 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 607 229 33 19 chr3 37746312 37746562 -180290596 + L1M2 LINE L1 5200 5446 -705 849 266 65 80 chr3 37746571 37747121 -180290037 - MER34 LTR ERV1 0 542 1 1313 275 65 70 chr3 37747128 37747815 -180289343 + L1ME3A LINE L1 5459 6142 -28 1201 199 42 10 chr3 37748655 37748961 -180288197 - LTR37A LTR ERV1 0 426 111 1846 123 43 14 chr3 37749546 37749822 -180287336 + AluSg SINE Alu 3 286 -24 200 304 0 0 chr3 37750383 37750439 -180286719 + CT-rich Low_complexity Low_complexity 3 58 0 8945 73 13 2 chr3 37752366 37754345 -180282813 - L1PA7 LINE L1 -20 6134 4138 2303 110 0 0 chr3 37755032 37755331 -180281827 - AluSc SINE Alu -10 299 1 598 245 40 20 chr3 37755334 37755485 -180281673 - MIR SINE MIR -104 158 5 2146 110 0 10 chr3 37756210 37756510 -180280648 + AluSc SINE Alu 1 297 -12 265 304 76 0 chr3 37757667 37757759 -180279399 - MIR SINE MIR -70 192 94 664 287 12 18 chr3 37757812 37757976 -180279182 - MER5A DNA MER1_type 0 189 27 1270 235 6 42 chr3 37758840 37759193 -180277965 + MER58B DNA MER1_type 2 341 0 315 203 0 0 chr3 37759887 37759961 -180277197 - L1MB7 LINE L1 -3 6181 6108 414 181 29 0 chr3 37759965 37760070 -180277088 + (TA)n Simple_repeat Simple_repeat 2 109 0 4384 230 82 29 chr3 37760071 37760681 -180276477 - L1MB7 LINE L1 -93 6091 5515 2526 166 22 0 chr3 37760681 37761098 -180276060 - MSTB LTR MaLR 0 426 1 4384 230 82 29 chr3 37761098 37761352 -180275806 - L1MB7 LINE L1 -669 5515 5276 2402 63 3 0 chr3 37761352 37761639 -180275519 - AluY SINE Alu -23 288 1 4384 230 82 29 chr3 37761639 37763213 -180273945 - L1MB7 LINE L1 -908 5276 3526 253 357 54 38 chr3 37763274 37763459 -180273699 - LTR16C LTR ERVL -196 295 108 350 290 11 0 chr3 37763574 37763667 -180273491 - Tigger7 DNA MER2_type -4 2483 2390 * 1055 233 20 0 chr3 37763665 37763867 -180273291 - Tigger7 DNA MER2_type -2220 267 62 1359 323 67 49 chr3 37764694 37766020 -180271138 - ERVL LTR ERVL -898 4597 3155 3670 96 146 131 chr3 37766021 37767447 -180269711 - pTR5 LTR ERV1 0 2606 1524 857 302 42 29 chr3 37767421 37767732 -180269426 - ERVL LTR ERVL -2474 3180 2866 * 490 368 38 17 chr3 37767719 37768010 -180269148 - ERVL LTR ERVL -4078 1686 1390 * 1746 183 51 0 chr3 37768106 37768440 -180268718 - MLT1A1 LTR MaLR -14 351 1 402 305 23 8 chr3 37768796 37768954 -180268204 + MLT1J2 LTR MaLR 1 160 -249 907 200 71 78 chr3 37768963 37769258 -180267900 - MLT1B LTR MaLR 0 390 98 304 227 144 10 chr3 37769877 37769974 -180267184 + MLT1I LTR MaLR 299 408 -1 3458 152 95 19 chr3 37770313 37770984 -180266174 + MER72 LTR ERV1 1 722 0 21 36 0 0 chr3 37771117 37771145 -180266013 + AT_rich Low_complexity Low_complexity 1 28 0 457 320 44 19 chr3 37772100 37772306 -180264852 + MIR SINE MIR 15 225 -37 2058 132 139 13 chr3 37772398 37772778 -180264380 + MSTA LTR MaLR 1 428 0 376 329 22 15 chr3 37772812 37772949 -180264209 - MIR SINE MIR -123 139 2 2434 75 0 31 chr3 37773308 37773629 -180263529 - AluY SINE Alu 0 311 1 194 329 92 0 chr3 37773821 37773897 -180263261 + MIR3 SINE MIR 5 87 -121 228 35 0 0 chr3 37774125 37774154 -180263004 + (TG)n Simple_repeat Simple_repeat 1 29 0 351 320 0 8 chr3 37774335 37774457 -180262701 - LTR67 LTR ERVL -19 538 418 2340 101 0 0 chr3 37774627 37774924 -180262234 - AluSx SINE Alu -15 297 1 183 186 0 0 chr3 37775385 37775428 -180261730 + T-rich Low_complexity Low_complexity 1 43 0 2929 173 26 9 chr3 37776219 37776757 -180260401 + MER44D DNA MER2_type 1 602 -3 29 78 0 0 chr3 37776844 37776908 -180260250 + AT_rich Low_complexity Low_complexity 1 64 0 1010 346 177 19 chr3 37777358 37778557 -180258601 + L3 LINE CR1 189 1576 -1 245 333 124 7 chr3 37779012 37779165 -180257993 - MIR SINE MIR -11 251 81 203 175 0 0 chr3 37779334 37779374 -180257784 + A-rich Low_complexity Low_complexity 1 40 0 317 259 108 57 chr3 37781150 37781308 -180255850 - MIR SINE MIR -59 203 38 448 283 107 83 chr3 37783709 37783999 -180253159 - L2 LINE L2 0 3272 2976 244 250 39 86 chr3 37785611 37785739 -180251419 - MLT1J LTR MaLR -66 445 324 237 255 101 20 chr3 37786141 37786290 -180250868 - L1M2 LINE L1 -848 5452 5292 1253 197 12 37 chr3 37786755 37786999 -180250159 + MER8 DNA MER2_type 2 239 0 787 287 69 23 chr3 37787407 37787668 -180249490 + MER54A LTR ERVL 303 575 -326 26 30 0 0 chr3 37789020 37789053 -180248105 + AT_rich Low_complexity Low_complexity 1 33 0 396 0 0 0 chr3 37789442 37789486 -180247672 + (TG)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr3 37789536 37789557 -180247601 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr3 37789827 37789866 -180247292 + AT_rich Low_complexity Low_complexity 1 39 0 32 86 0 0 chr3 37791090 37791171 -180245987 + AT_rich Low_complexity Low_complexity 1 81 0 258 295 107 54 chr3 37791532 37791644 -180245514 - L2 LINE L2 -8 3305 3188 185 178 22 0 chr3 37792347 37792392 -180244766 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 216 0 0 0 chr3 37792757 37792781 -180244377 + (T)n Simple_repeat Simple_repeat 1 24 0 318 211 23 113 chr3 37795069 37795132 -180242026 - Charlie8 DNA MER1_type -185 145 99 1843 163 0 3 chr3 37795132 37795421 -180241737 + AluJb SINE Alu 1 288 -24 318 211 23 113 chr3 37795421 37795490 -180241668 - Charlie8 DNA MER1_type -231 99 25 459 239 2 42 chr3 37795914 37796034 -180241124 + MLT1E LTR MaLR 57 170 -397 1028 196 4 52 chr3 37897360 37897589 -180139569 + MER20 DNA MER1_type 2 219 0 2041 122 3 7 chr3 37897989 37898283 -180138875 + AluSc SINE Alu 4 296 -13 183 42 0 0 chr3 37898707 37898731 -180138427 + (CAA)n Simple_repeat Simple_repeat 2 25 0 1510 215 11 4 chr3 37899593 37899872 -180137286 - AluJb SINE Alu -29 283 3 424 231 0 0 chr3 37902099 37902110 -180135048 + FRAM/FAM SINE Alu 1 3 -173 672 205 0 8 chr3 37902110 37902227 -180134931 + FLAM_A SINE Alu 4 119 -14 1207 142 44 93 chr3 37902714 37903058 -180134100 + THE1C LTR MaLR 1 327 -48 198 330 0 11 chr3 37903306 37903394 -180133764 + MIR SINE MIR 175 261 -1 22 56 0 0 chr3 37904137 37904173 -180132985 + AT_rich Low_complexity Low_complexity 1 36 0 6125 92 0 6 chr3 37904641 37905870 -180131288 - L1PA7 LINE L1 -13 6141 4895 25 69 0 0 chr3 37905994 37906023 -180131135 + GC_rich Low_complexity Low_complexity 1 29 0 362 116 20 68 chr3 37906026 37906172 -180130986 + G-rich Low_complexity Low_complexity 4 142 0 8319 118 1 0 chr3 37906177 37907492 -180129666 + L1P LINE L1 3765 5081 -1065 1904 164 0 22 chr3 37907677 37907995 -180129163 + AluJo SINE Alu 1 311 -1 243 0 0 0 chr3 37908021 37908048 -180129110 + (TA)n Simple_repeat Simple_repeat 1 27 0 410 288 209 0 chr3 37908170 37908361 -180128797 - MIR SINE MIR -29 233 3 1479 180 31 7 chr3 37909418 37909707 -180127451 + L1MB5 LINE L1 5871 6166 -8 287 273 71 13 chr3 37910189 37910343 -180126815 - LTR16B LTR ERVL -90 374 212 3823 110 33 3 chr3 37911811 37912394 -180124764 - LTR43 LTR ERV1 -2 600 1 225 326 56 34 chr3 37912748 37912926 -180124232 + MIR SINE MIR 66 247 -15 183 250 23 0 chr3 37914637 37914681 -180122477 + L2 LINE L2 3211 3255 -17 34 55 0 0 chr3 37916013 37916068 -180121090 + AT_rich Low_complexity Low_complexity 1 55 0 783 162 48 54 chr3 37917643 37917810 -180119348 + MER21B LTR ERV1 8 173 -690 4054 61 2 2 chr3 37917814 37918370 -180118788 + L1P LINE L1 4332 4887 -1259 1830 166 24 0 chr3 37918490 37918863 -180118295 - L1 LINE L1 -911 5235 4854 226 200 0 0 chr3 37918973 37919013 -180118145 + MIR SINE MIR 77 116 -146 2224 120 0 7 chr3 37919283 37919568 -180117590 + AluSx SINE Alu 1 285 -27 216 0 0 0 chr3 37919568 37919592 -180117566 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2224 120 0 7 chr3 37919592 37919606 -180117552 + AluSx SINE Alu 285 298 -14 1839 164 3 7 chr3 37919613 37919912 -180117246 + AluSx SINE Alu 5 302 -10 12302 83 9 1 chr3 37920411 37922140 -180115018 - L1P LINE L1 -4393 1753 11 212 333 93 33 chr3 37922163 37922463 -180114695 - L2 LINE L2 -587 2727 2410 * 299 242 0 0 chr3 37922461 37922523 -180114635 - MIR SINE MIR 0 262 201 549 49 24 0 chr3 37923837 37923919 -180113239 + L1P LINE L1 4395 4478 -1668 395 243 155 7 chr3 37925234 37925419 -180111739 + L1M4 LINE L1 5600 5813 -371 6237 177 24 8 chr3 37925532 37926841 -180110317 - L1 LINE L1 -1483 4663 3334 5103 118 20 7 chr3 37926973 37927823 -180109335 - L1MA3 LINE L1 -92 6213 5353 460 346 91 18 chr3 37928119 37928460 -180108698 + L1M4 LINE L1 4487 4852 -1294 212 197 0 16 chr3 37928496 37928557 -180108601 + C-rich Low_complexity Low_complexity 2 61 0 397 177 31 3 chr3 37928795 37928907 -180108251 - L1MB8 LINE L1 0 6178 6068 250 290 0 0 chr3 37928960 37929022 -180108136 + L2 LINE L2 3251 3312 -1 186 287 20 129 chr3 37929946 37930047 -180107111 - MER5A DNA MER1_type -28 161 72 5695 144 35 20 chr3 37930467 37931482 -180105676 + HSMAR2 DNA Mariner 273 1302 0 275 237 44 0 chr3 37931516 37931630 -180105528 + (TA)n Simple_repeat Simple_repeat 2 120 0 388 263 167 26 chr3 37931759 37932043 -180105115 + MER102b DNA MER1_type 1 338 -3 722 259 85 22 chr3 37932683 37932907 -180104251 + MIR SINE MIR 15 252 -10 21 0 0 0 chr3 37933232 37933253 -180103905 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr3 37933467 37933495 -180103663 + AT_rich Low_complexity Low_complexity 1 28 0 2121 94 11 4 chr3 37933524 37933833 -180103325 - AluSc SINE Alu 0 311 1 254 219 0 44 chr3 37934641 37934801 -180102357 + A-rich Low_complexity Low_complexity 3 155 0 43 76 0 0 chr3 37934811 37934903 -180102255 + AT_rich Low_complexity Low_complexity 1 92 0 320 264 108 85 chr3 37935024 37935299 -180101859 + L1MC/D LINE L1 5354 5636 -587 1273 203 31 22 chr3 37935331 37935651 -180101507 - MER58B DNA MER1_type -6 335 13 2387 56 3 10 chr3 37935740 37936044 -180101114 + AluY SINE Alu 1 302 -9 183 246 49 16 chr3 37936442 37936503 -180100655 - L2 LINE L2 -592 2722 2660 1826 154 0 8 chr3 37936745 37937012 -180100146 + AluSx SINE Alu 1 265 -47 33 0 0 0 chr3 37937012 37937045 -180100113 + AT_rich Low_complexity Low_complexity 1 33 0 243 0 0 0 chr3 37937467 37937494 -180099664 + (A)n Simple_repeat Simple_repeat 1 27 0 271 235 35 35 chr3 37937744 37937829 -180099329 + CT-rich Low_complexity Low_complexity 4 88 0 272 242 16 24 chr3 37937831 37937955 -180099203 + C-rich Low_complexity Low_complexity 3 125 0 886 173 83 0 chr3 37939441 37939597 -180097561 + FAM SINE Alu 1 169 -6 229 200 25 88 chr3 37939597 37939677 -180097481 + L1MA4 LINE L1 6132 6206 -94 6351 119 10 14 chr3 37941616 37942724 -180094434 - L1P LINE L1 -1990 4156 3053 1347 72 12 0 chr3 37942860 37943027 -180094131 - AluSg/x SINE Alu -53 259 91 2836 3 0 19 chr3 37943593 37943911 -180093247 - AluYb8 SINE Alu -6 312 1 2773 10 0 0 chr3 37944556 37944858 -180092300 - AluY SINE Alu -9 302 1 242 313 39 86 chr3 37946598 37946726 -180090432 - L2 LINE L2 -35 3237 3116 885 200 5 54 chr3 37946820 37947025 -180090133 - MER3 DNA MER1_type -14 195 1 566 121 0 44 chr3 37947265 37947356 -180089802 - AluSg/x SINE Alu -24 285 199 204 264 0 0 chr3 37947367 37947420 -180089738 + C-rich Low_complexity Low_complexity 6 58 0 * 212 208 0 83 chr3 37947384 37947480 -180089678 + CT-rich Low_complexity Low_complexity 2 89 0 900 186 87 58 chr3 37947606 37947881 -180089277 - THE1C LTR MaLR -92 283 1 4425 112 3 45 chr3 37947889 37948637 -180088521 - THE1C-int LTR MaLR -8 1572 857 222 64 21 43 chr3 37948849 37948896 -180088262 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 1950 158 118 2 chr3 37950613 37951069 -180086089 - Tigger2 DNA MER2_type -2209 509 1 353 284 87 0 chr3 37952777 37952904 -180084254 - MIR SINE MIR -72 190 53 326 289 77 10 chr3 37953502 37953606 -180083552 + MIR3 SINE MIR 89 199 -9 214 256 179 0 chr3 37954261 37954339 -180082819 + L2 LINE L2 3219 3310 -3 249 330 19 9 chr3 37954603 37954709 -180082449 + MIR SINE MIR 28 134 -128 2016 158 3 0 chr3 37955020 37955323 -180081835 - AluSx SINE Alu -8 304 1 22 0 0 0 chr3 37956129 37956151 -180081007 + AT_rich Low_complexity Low_complexity 1 22 0 321 213 25 25 chr3 37957149 37957229 -180079929 - Alu SINE Alu -15 285 206 608 292 134 5 chr3 37958910 37959112 -180078046 - MIR SINE MIR -22 240 13 445 216 49 10 chr3 37959634 37959736 -180077422 - L1PA15 LINE L1 -2 6163 6058 4112 241 82 20 chr3 37959966 37961082 -180076076 + L1M2b LINE L1 29 1213 -5996 7537 152 11 3 chr3 37961182 37962330 -180074828 + L1PA12 LINE L1 1093 2248 -5333 22 35 0 0 chr3 37963138 37963167 -180073991 + AT_rich Low_complexity Low_complexity 1 29 0 592 228 112 80 chr3 37963728 37963952 -180073206 - MIR SINE MIR -30 232 2 202 271 34 17 chr3 38064898 38064957 -179972201 - MIR SINE MIR -91 171 112 497 338 54 13 chr3 38064999 38065313 -179971845 + L2 LINE L2 1856 2182 -1132 351 0 0 0 chr3 38065335 38065374 -179971784 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 1177 216 157 44 chr3 38065374 38065782 -179971376 - MER39 LTR ERV1 -31 676 223 229 309 41 10 chr3 38065775 38065872 -179971286 - LTR48B LTR ERV1 -541 103 4 * 245 346 58 32 chr3 38066151 38066307 -179970851 - MIR3 SINE MIR -31 177 18 505 304 20 20 chr3 38067053 38067201 -179969957 - MIR3 SINE MIR 0 208 61 592 236 22 33 chr3 38068152 38068334 -179968824 - L1M4 LINE L1 -2272 3874 3695 3824 104 35 199 chr3 38068340 38069339 -179967819 + Tigger1 DNA MER2_type 388 1222 -1196 781 195 154 5 chr3 38069371 38069566 -179967592 + Tigger1 DNA MER2_type 2185 2408 -10 330 280 60 0 chr3 38069657 38069757 -179967401 - MIR SINE MIR -38 224 119 242 353 44 19 chr3 38070979 38071151 -179966007 + MIR SINE MIR 35 206 -56 2288 168 32 43 chr3 38071733 38072240 -179964918 - L1MB7 LINE L1 -14 6406 5906 4053 180 43 23 chr3 38072246 38073151 -179964007 - L1MC2 LINE L1 -8 6336 5414 5009 137 72 87 chr3 38073154 38074286 -179962872 + MER52C LTR ERV1 31 1146 -132 254 173 0 27 chr3 38074286 38074361 -179962797 - L1MC2 LINE L1 -2642 5353 5281 * 760 229 3 0 chr3 38074344 38074514 -179962644 - L1MB7 LINE L1 -513 5907 5758 * 1382 42 31 0 chr3 38074511 38074704 -179962454 - L1PA4 LINE L1 -2819 3327 3129 17333 27 7 1 chr3 38074704 38077537 -179959621 + L1PA4 LINE L1 3317 6154 -1 504 225 0 0 chr3 38077548 38077669 -179959489 - L1MB7 LINE L1 -644 5775 5655 * 855 267 54 40 chr3 38077665 38078088 -179959070 - L1MB7 LINE L1 -3922 2462 2034 1179 168 44 134 chr3 38078089 38078476 -179958682 - MLT1A1 LTR MaLR -10 355 4 2093 215 45 39 chr3 38078522 38078611 -179958547 - L1MB7 LINE L1 -4497 1887 1800 2583 44 0 28 chr3 38078611 38078931 -179958227 - AluY SINE Alu 0 311 1 2093 215 45 39 chr3 38078931 38079463 -179957695 - L1MB7 LINE L1 -4584 1800 1262 * 11472 195 37 21 chr3 38079439 38079824 -179957334 - L1MA4A LINE L1 -274 6265 5888 1927 180 71 17 chr3 38079824 38080230 -179956928 + MSTA LTR MaLR 1 428 0 11472 195 37 21 chr3 38080230 38081717 -179955441 - L1MA4A LINE L1 -651 5888 4427 186 43 0 0 chr3 38081717 38081740 -179955418 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 11472 195 37 21 chr3 38081740 38083344 -179953814 - L1MA4A LINE L1 -2112 4427 2720 10030 243 53 49 chr3 38083346 38086235 -179950923 - L1MA4A LINE L1 -3945 2904 6 379 303 43 25 chr3 38087682 38087844 -179949314 - MLT1J2 LTR MaLR 0 450 286 299 284 59 10 chr3 38087941 38088043 -179949115 - MLT1J2 LTR MaLR -302 148 42 322 214 92 10 chr3 38088443 38088541 -179948617 + MIR3 SINE MIR 102 207 -1 311 306 33 25 chr3 38089039 38089160 -179947998 + MIR SINE MIR 32 153 -109 2497 67 0 3 chr3 38089176 38089488 -179947670 - AluY SINE Alu 0 311 1 315 71 0 0 chr3 38090546 38090588 -179946570 + (TTTTC)n Simple_repeat Simple_repeat 3 44 0 362 285 6 44 chr3 38090764 38090922 -179946236 + CT-rich Low_complexity Low_complexity 1 152 0 1240 214 133 41 chr3 38091063 38091475 -179945683 - MLT1C LTR MaLR 0 467 18 602 236 129 0 chr3 38093897 38094051 -179943107 + MER5A DNA MER1_type 4 180 -9 754 226 162 4 chr3 38095253 38095488 -179941670 - MLT1L LTR MaLR -2 613 342 533 250 169 7 chr3 38095843 38095991 -179941167 - MER5A DNA MER1_type -9 180 9 1753 187 7 3 chr3 38096303 38096602 -179940556 + AluSx SINE Alu 1 300 -12 437 203 77 4 chr3 38097113 38097237 -179939921 + MER3 DNA MER1_type 1 140 -69 23 68 0 0 chr3 38097462 38097506 -179939652 + AT_rich Low_complexity Low_complexity 1 44 0 220 143 24 0 chr3 38098168 38098210 -179938948 + (TA)n Simple_repeat Simple_repeat 2 44 0 318 277 34 42 chr3 38098210 38098448 -179938710 + L1ME LINE L1 5544 5779 -342 2268 98 0 3 chr3 38098735 38099058 -179938100 - AluSq SINE Alu 0 322 1 235 262 162 24 chr3 38099407 38099614 -179937544 - MLT1J LTR MaLR -72 543 232 21 36 0 0 chr3 38099991 38100019 -179937139 + AT_rich Low_complexity Low_complexity 1 28 0 1122 262 85 29 chr3 38100120 38100498 -179936660 - LTR16C LTR ERVL -22 469 71 472 329 33 7 chr3 38100637 38100789 -179936369 - MIR SINE MIR -101 161 6 483 194 10 41 chr3 38101763 38101861 -179935297 - MER63A DNA MER1_type -6 204 110 576 285 54 31 chr3 38101861 38102121 -179935037 - L1ME3 LINE L1 -83 6079 5814 714 123 31 223 chr3 38102131 38102423 -179934735 + MER33 DNA MER1_type 2 237 -87 1516 209 67 13 chr3 38102424 38102812 -179934346 - MLT1C LTR MaLR 0 467 59 455 187 33 0 chr3 38102864 38102955 -179934203 + MER33 DNA MER1_type 231 324 0 328 269 72 59 chr3 38103087 38103126 -179934032 - L1ME LINE L1 -5105 965 928 2222 124 0 0 chr3 38103126 38103424 -179933734 + AluSx SINE Alu 1 298 -14 328 269 72 59 chr3 38103424 38103594 -179933564 - L1ME LINE L1 -5142 928 816 2086 143 0 6 chr3 38105366 38105680 -179931478 - AluSx SINE Alu 0 312 1 1708 263 57 11 chr3 38105910 38106454 -179930704 - L1ME2 LINE L1 -9 6950 6382 1001 257 84 60 chr3 38106481 38106860 -179930298 - L1ME2 LINE L1 -3925 3197 2828 858 267 32 5 chr3 38106860 38107077 -179930081 + MER58A DNA MER1_type 2 224 0 1001 257 84 60 chr3 38107077 38107257 -179929901 - L1ME2 LINE L1 -4294 2828 2621 1801 150 10 38 chr3 38107257 38107570 -179929588 - AluSx SINE Alu -8 304 1 1001 257 84 60 chr3 38107570 38107605 -179929553 - L1ME2 LINE L1 -4501 2621 2588 1454 251 53 55 chr3 38107643 38107792 -179929366 - L1ME2 LINE L1 -4690 2432 2284 2208 104 7 3 chr3 38107792 38108099 -179929059 + AluSq SINE Alu 1 308 -5 1454 251 53 55 chr3 38108099 38108717 -179928441 - L1ME2 LINE L1 -4838 2284 1666 627 306 17 13 chr3 38108759 38108991 -179928167 - L1ME2 LINE L1 -4968 1455 1223 245 282 68 19 chr3 38109459 38109562 -179927596 - L1ME2 LINE L1 -5294 1129 1022 483 238 90 63 chr3 38109565 38109754 -179927404 - L1ME2 LINE L1 -5981 442 249 3504 214 27 9 chr3 38109767 38110608 -179926550 - L1P LINE L1 -921 5225 4370 * 5176 135 15 4 chr3 38110606 38111429 -179925729 + L1PA16 LINE L1 5327 6158 -8 7275 42 1 0 chr3 38111489 38112381 -179924777 - L1PA5 LINE L1 -1376 4770 3878 7168 46 10 1 chr3 38112381 38113767 -179923391 + L1PA5 LINE L1 4761 6154 0 324 251 47 93 chr3 38113775 38113990 -179923168 - L1ME2 LINE L1 -6200 223 19 3924 170 41 10 chr3 38115143 38115926 -179921232 - L1PA16 LINE L1 0 6166 5360 23 0 0 0 chr3 38116560 38116583 -179920575 + AT_rich Low_complexity Low_complexity 1 23 0 390 203 0 0 chr3 38116615 38116684 -179920474 + MER5A DNA MER1_type 1 69 -120 380 316 8 8 chr3 38116684 38116714 -179920444 - L1MA10 LINE L1 -27 6307 6278 503 296 28 33 chr3 38116714 38116927 -179920231 - L1ME1 LINE L1 -47 6119 5908 2411 176 26 36 chr3 38116933 38117467 -179919691 - L1MC2 LINE L1 0 6344 5816 21 0 0 0 chr3 38117467 38117488 -179919670 + AT_rich Low_complexity Low_complexity 1 21 0 648 213 8 0 chr3 38117488 38117610 -179919548 - FLAM_C SINE Alu -18 125 3 2810 186 51 3 chr3 38117612 38118226 -179918932 - L1MC2 LINE L1 -519 5825 5185 1636 230 29 36 chr3 38118232 38118438 -179918720 - L1ME1 LINE L1 -272 5894 5688 1570 204 3 7 chr3 38118438 38118732 -179918426 - AluJb SINE Alu -18 294 2 1636 230 29 36 chr3 38118732 38118972 -179918186 - L1ME1 LINE L1 -478 5688 5451 267 200 63 42 chr3 38118970 38119065 -179918093 - L1ME1 LINE L1 -1364 4782 4686 * 698 277 94 0 chr3 38119147 38119360 -179917798 + Charlie1 DNA MER1_type 6 238 -2523 497 238 8 8 chr3 38119347 38119469 -179917689 + Charlie1 DNA MER1_type 2623 2744 -17 * 2822 169 9 30 chr3 38120991 38121907 -179915251 + L1P4 LINE L1 4876 5768 -395 207 0 0 0 chr3 38121909 38121932 -179915226 + (TA)n Simple_repeat Simple_repeat 1 23 0 1615 143 0 4 chr3 38122100 38122372 -179914786 - AluY SINE Alu -40 271 1 2997 150 3 22 chr3 38123211 38123878 -179913280 + L1PA16 LINE L1 5135 5768 -398 459 194 0 0 chr3 38123881 38123974 -179913184 + (TA)n Simple_repeat Simple_repeat 2 94 0 2364 118 10 15 chr3 38123974 38124183 -179912975 + L1PA16 LINE L1 5776 5984 -182 1801 149 49 35 chr3 38124183 38124553 -179912605 - THE1C LTR MaLR 0 375 1 2364 118 10 15 chr3 38124553 38124733 -179912425 + L1PA16 LINE L1 5984 6163 -3 32 57 0 0 chr3 38125147 38125200 -179911958 + AT_rich Low_complexity Low_complexity 1 53 0 691 194 4 15 chr3 38125394 38125634 -179911524 + AluJb SINE Alu 3 298 -14 414 0 0 0 chr3 38125816 38125862 -179911296 + (TG)n Simple_repeat Simple_repeat 1 46 0 2304 85 0 3 chr3 38126305 38126610 -179910548 + AluY SINE Alu 1 304 -7 562 299 26 0 chr3 38127068 38127222 -179909936 - MER63A DNA MER1_type 0 210 53 468 246 120 42 chr3 38127578 38127745 -179909413 - MER5A DNA MER1_type 0 189 10 231 114 0 0 chr3 38127907 38127942 -179909216 + (T)n Simple_repeat Simple_repeat 1 35 0 265 265 29 0 chr3 38129301 38129369 -179907789 + GA-rich Low_complexity Low_complexity 3 72 0 2898 6 0 0 chr3 38130703 38131020 -179906138 + AluYb8 SINE Alu 1 317 -1 391 147 29 0 chr3 38131052 38131120 -179906038 - L1MC3 LINE L1 -19 7766 7697 710 172 18 61 chr3 38131135 38131298 -179905860 - L1MC3 LINE L1 -278 7507 7352 636 210 19 6 chr3 38131298 38131455 -179905703 + L1MD1 LINE L1 6083 6241 -1 185 0 40 0 chr3 38132309 38132334 -179904824 + (TTTTC)n Simple_repeat Simple_repeat 5 30 0 1119 234 9 0 chr3 38133702 38133924 -179903234 - MER58A DNA MER1_type 0 224 1 1999 152 63 78 chr3 38135278 38135752 -179901406 + MLT1C LTR MaLR 1 467 0 22 0 0 0 chr3 38136733 38136755 -179900403 + AT_rich Low_complexity Low_complexity 1 22 0 236 322 68 75 chr3 38137031 38137323 -179899835 + L1MEd LINE L1 513 802 -5317 249 327 38 6 chr3 38137486 38137645 -179899513 + L1MEd LINE L1 904 1067 -5052 473 320 8 0 chr3 38137833 38138092 -179899066 + L1MEd LINE L1 2587 2847 -3282 770 286 116 45 chr3 38138297 38138891 -179898267 - HAL1 LINE L1 -621 1886 1251 337 341 118 4 chr3 38138977 38139206 -179897952 + MIR SINE MIR 8 262 0 341 332 153 26 chr3 38139221 38139534 -179897624 - HAL1 LINE L1 -1365 1142 790 21 0 0 0 chr3 38139853 38139874 -179897284 + AT_rich Low_complexity Low_complexity 1 21 0 559 227 86 73 chr3 38139964 38140091 -179897067 + MER58A DNA MER1_type 2 135 -2285 1709 133 53 30 chr3 38140091 38140392 -179896766 + AluSg1 SINE Alu 2 309 0 559 227 86 73 chr3 38140392 38140484 -179896674 + MER58A DNA MER1_type 135 224 0 25 51 0 0 chr3 38140568 38140607 -179896551 + AT_rich Low_complexity Low_complexity 1 39 0 3939 161 38 13 chr3 38140700 38142077 -179895081 + L1MB3 LINE L1 18 1602 -4782 * 4458 203 26 8 chr3 38142065 38143091 -179894067 + L1MB3 LINE L1 5354 6416 -3 3877 234 65 18 chr3 38143093 38144194 -179892964 + L1MD2 LINE L1 5186 6340 -19 219 88 0 0 chr3 38144326 38144360 -179892798 + (TC)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr3 38145255 38145279 -179891879 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr3 38146847 38146883 -179890275 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr3 38146978 38147006 -179890152 + AT_rich Low_complexity Low_complexity 1 28 0 504 0 0 0 chr3 38147090 38147146 -179890012 + (TG)n Simple_repeat Simple_repeat 2 57 0 1423 24 0 0 chr3 38147536 38147740 -179889418 + L1PA4 LINE L1 5972 6175 0 180 0 0 0 chr3 38147778 38147798 -179889360 + (TAA)n Simple_repeat Simple_repeat 2 21 0 675 232 11 50 chr3 38147923 38148104 -179889054 - MER69A DNA AcHobo 0 177 4 517 173 45 0 chr3 38148430 38148540 -179888618 + L1MA4 LINE L1 6181 6295 -5 419 233 6 126 chr3 38149832 38149991 -179887167 + MIR SINE MIR 3 142 -120 7966 227 68 33 chr3 38150026 38150387 -179886771 - L1MC/D LINE L1 -502 6134 5787 1619 201 3 10 chr3 38150387 38150690 -179886468 - AluJo SINE Alu -11 301 1 7966 227 68 33 chr3 38150690 38151788 -179885370 - L1MC/D LINE L1 -849 5787 4729 2138 117 0 0 chr3 38151788 38152086 -179885072 - AluSx SINE Alu -14 298 1 7966 227 68 33 chr3 38152086 38155318 -179881840 - L1MC/D LINE L1 -1907 4729 1167 1475 189 3 54 chr3 38155324 38155428 -179881730 + AluJb SINE Alu 7 115 -197 2616 118 0 3 chr3 38155428 38155793 -179881365 + THE1B LTR MaLR 1 364 0 10062 122 18 28 chr3 38155793 38157389 -179879769 + THE1B-int LTR MaLR 1 1580 0 2472 86 5 62 chr3 38157391 38157775 -179879383 + THE1B LTR MaLR 3 364 0 1475 189 3 54 chr3 38157775 38157979 -179879179 + AluJb SINE Alu 115 303 -9 4108 250 84 6 chr3 38157981 38159046 -179878112 - L1MC/D LINE L1 -5367 1173 26 180 0 0 0 chr3 38159097 38159117 -179878041 + (TA)n Simple_repeat Simple_repeat 2 21 0 717 249 6 45 chr3 38159629 38159806 -179877352 + MER5A DNA MER1_type 1 170 -19 353 286 191 6 chr3 38159861 38160029 -179877129 + MIR SINE MIR 64 262 0 475 273 201 5 chr3 38160943 38161152 -179876006 - MIR SINE MIR 0 262 13 182 422 60 18 chr3 38161713 38161931 -179875227 + L3 LINE CR1 209 435 -1142 770 68 0 0 chr3 38162884 38162987 -179874171 + AluY SINE Alu 209 311 0 462 270 104 74 chr3 38163427 38163657 -179873501 - MIR SINE MIR -11 251 15 470 255 60 13 chr3 38163808 38163957 -179873201 - L1ME3A LINE L1 -9 6161 6006 902 272 51 44 chr3 38163969 38164288 -179872870 - L1ME3A LINE L1 -404 5766 5442 2416 46 30 16 chr3 38164288 38164593 -179872565 - AluY SINE Alu 0 311 3 902 272 51 44 chr3 38164593 38164663 -179872495 - L1ME3A LINE L1 -728 5442 5374 253 256 49 12 chr3 38166679 38166761 -179870397 + MLT1K LTR MaLR 504 588 0 252 59 0 0 chr3 38166815 38166849 -179870309 + (T)n Simple_repeat Simple_repeat 1 34 0 309 231 0 26 chr3 38167294 38167372 -179869786 - L1P LINE L1 -1052 5094 5019 537 89 13 0 chr3 38167373 38167452 -179869706 - MER57B-int LTR ERV1 -2151 5386 5307 * 1330 153 32 20 chr3 38167443 38168013 -179869145 - MER57B-int LTR ERV1 -1986 4277 734 23804 78 8 4 chr3 38168013 38172134 -179865024 - L1PA7 LINE L1 0 6154 2020 2537 160 30 0 chr3 38172156 38172562 -179864596 - MER57B-int LTR ERV1 -5241 705 288 * 4175 151 21 6 chr3 38172559 38173221 -179863937 - MER57B-int LTR ERV1 -6865 672 1 2892 125 7 0 chr3 38173221 38173652 -179863506 - MER57B LTR ERV1 0 434 1 1147 138 0 0 chr3 38173656 38173837 -179863321 + L1PB3 LINE L1 20 200 -6663 5724 108 200 15 chr3 38173839 38174845 -179862313 + L1PB3 LINE L1 636 1827 -5036 8396 214 25 24 chr3 38174847 38176932 -179860226 + L1PB3 LINE L1 3816 5901 -961 1223 201 61 4 chr3 38176935 38177198 -179859960 - L1 LINE L1 -1777 4369 4092 5757 95 44 0 chr3 38177198 38177769 -179859389 + L1PB1 LINE L1 5190 5816 -335 351 0 0 0 chr3 38177769 38177808 -179859350 + (TA)n Simple_repeat Simple_repeat 1 39 0 5757 95 44 0 chr3 38177808 38178160 -179858998 + L1PB1 LINE L1 5816 6151 0 5066 117 42 9 chr3 38178167 38178977 -179858181 + L1PB3 LINE L1 6030 6866 -4 937 242 54 4 chr3 38179148 38179408 -179857750 + ORSL DNA AcHobo 1 273 -2 35 54 0 0 chr3 38182498 38182554 -179854604 + AT_rich Low_complexity Low_complexity 1 56 0 792 223 73 15 chr3 38182554 38182760 -179854398 + MER20 DNA MER1_type 1 218 -1 228 67 0 0 chr3 38182779 38182809 -179854349 + (TATG)n Simple_repeat Simple_repeat 3 32 0 481 256 8 16 chr3 38183409 38183530 -179853628 + MER5C DNA MER1_type 1 120 -204 1151 142 0 0 chr3 38183726 38183902 -179853256 + AluSg/x SINE Alu 128 303 -9 894 274 94 32 chr3 38184146 38184519 -179852639 - MLT1I LTR MaLR -8 401 6 186 293 259 26 chr3 38184668 38184784 -179852374 + MIR SINE MIR 54 196 -66 10547 182 49 6 chr3 38185517 38188416 -179848742 - L1PA15 LINE L1 -266 5899 2877 1582 181 58 4 chr3 38188478 38188754 -179848404 + AluSx SINE Alu 3 293 -19 1145 236 97 20 chr3 38188925 38189372 -179847786 + MLT1H LTR MaLR 5 526 -4 515 194 0 0 chr3 38189536 38189639 -179847519 - MLT1D LTR MaLR 0 505 403 2213 250 38 2 chr3 38189645 38190225 -179846933 - MLT1D-int LTR MaLR -765 606 6 1684 200 63 78 chr3 38190230 38190740 -179846418 - MLT1D LTR MaLR 0 505 4 1597 146 42 0 chr3 38191169 38191432 -179845726 + AluSg SINE Alu 35 307 0 219 145 13 26 chr3 38191579 38191655 -179845503 + (TATAA)n Simple_repeat Simple_repeat 2 76 0 477 371 25 17 chr3 38192950 38193190 -179843968 + MIR SINE MIR 2 243 -19 180 348 0 0 chr3 38193798 38193844 -179843314 - MIR SINE MIR 0 262 217 338 244 118 16 chr3 38194947 38195074 -179842084 - MER117 DNA MER1_type -50 147 8 846 191 52 0 chr3 38195373 38195583 -179841575 + L1MA4 LINE L1 6074 6294 -6 416 263 184 66 chr3 38198302 38198667 -179838491 + MLT1H LTR MaLR 130 537 -12 2341 60 0 3 chr3 38198983 38199291 -179837867 + AluY SINE Alu 1 307 0 344 266 71 9 chr3 38199612 38199725 -179837433 + L2 LINE L2 3192 3311 -2 223 333 0 29 chr3 38199843 38199912 -179837246 + L2 LINE L2 3200 3266 -6 6718 177 14 18 chr3 38200955 38202122 -179835036 - L1PA14 LINE L1 -1 6160 4996 1846 162 0 3 chr3 38202122 38202412 -179834746 - AluSx SINE Alu -23 289 1 6718 177 14 18 chr3 38202412 38203386 -179833772 - L1PA14 LINE L1 -1165 4996 4020 1233 224 6 22 chr3 38203386 38203707 -179833451 + L1P LINE L1 2645 2960 -3186 4386 178 49 20 chr3 38205997 38206200 -179830958 + L1P LINE L1 2941 3137 -3009 2008 145 0 3 chr3 38206200 38206489 -179830669 + AluSq SINE Alu 1 288 -25 4386 178 49 20 chr3 38206489 38207328 -179829830 + L1P LINE L1 3137 4009 -2137 264 267 13 27 chr3 38207329 38207404 -179829754 - L2 LINE L2 -20 3293 3220 521 259 0 0 chr3 38207436 38207544 -179829614 - MIR SINE MIR -149 113 6 391 154 13 0 chr3 38207554 38207632 -179829526 - L1MC2 LINE L1 -1 6343 6265 257 366 105 41 chr3 38207790 38208208 -179828950 - L2 LINE L2 0 3272 2828 365 314 40 0 chr3 38209072 38209196 -179827962 - MLT1J LTR MaLR -112 399 271 221 282 69 40 chr3 38209244 38209315 -179827843 - L2 LINE L2 -2442 872 805 1633 99 177 4 chr3 38209315 38209582 -179827576 + AluSg1 SINE Alu 1 309 0 221 282 69 40 chr3 38209582 38209683 -179827475 - L2 LINE L2 -2509 805 694 11621 247 47 34 chr3 38209757 38217076 -179820082 - L1PB3 LINE L1 -2 6868 3 22 0 0 0 chr3 38217091 38217113 -179820045 + AT_rich Low_complexity Low_complexity 1 22 0 229 295 54 30 chr3 38217391 38217557 -179819601 - HAL1b LINE L1 -442 906 737 22 70 0 0 chr3 38217719 38217762 -179819396 + AT_rich Low_complexity Low_complexity 1 43 0 801 295 75 106 chr3 38218098 38218854 -179818304 - HAL1 LINE L1 -961 1546 814 265 382 16 0 chr3 38219070 38219193 -179817965 - LTR67 LTR ERVL -2 555 431 384 354 24 41 chr3 38219305 38219551 -179817607 - LTR67 LTR ERVL -296 261 20 1073 232 9 0 chr3 38220256 38220476 -179816682 - MER58A DNA MER1_type -2 222 1 21 0 0 0 chr3 38221033 38221054 -179816104 + AT_rich Low_complexity Low_complexity 1 21 0 688 261 29 24 chr3 38222014 38222221 -179814937 + MIR SINE MIR 1 208 -54 405 198 47 0 chr3 38222280 38222366 -179814792 - MER5A DNA MER1_type -83 106 17 215 222 0 0 chr3 38222424 38222469 -179814689 + (CAT)n Simple_repeat Simple_repeat 1 45 0 195 281 31 16 chr3 38222515 38222579 -179814579 + L2 LINE L2 3171 3235 -78 209 328 62 8 chr3 38222656 38222784 -179814374 + L2 LINE L2 2221 2355 -959 5014 169 31 6 chr3 38223197 38223847 -179813311 + L1M1 LINE L1 4310 4942 -1358 306 50 0 0 chr3 38223847 38223887 -179813271 + (TC)n Simple_repeat Simple_repeat 1 40 0 5014 169 31 6 chr3 38223887 38224501 -179812657 + L1M1 LINE L1 4942 5607 -693 * 32176 36 38 2 chr3 38224499 38228501 -179808657 - L1P LINE L1 -1999 4147 2 719 296 109 57 chr3 38228671 38229341 -179807817 - HAL1 LINE L1 -1163 1344 640 585 339 53 12 chr3 38229457 38229779 -179807379 - HAL1 LINE L1 -2090 417 83 1703 188 7 13 chr3 38229785 38230089 -179807069 + AluSx SINE Alu 1 302 -10 411 56 0 0 chr3 38230484 38230538 -179806620 + (TG)n Simple_repeat Simple_repeat 1 54 0 540 301 77 29 chr3 38231238 38231484 -179805674 - MIR SINE MIR 0 262 5 1837 115 41 4 chr3 38232499 38232768 -179804390 + AluSg SINE Alu 14 292 -18 23 0 0 0 chr3 38232783 38232806 -179804352 + AT_rich Low_complexity Low_complexity 1 23 0 1003 182 155 54 chr3 38232868 38233164 -179803994 + MLT1A1 LTR MaLR 1 326 -39 248 314 92 22 chr3 38233504 38233689 -179803469 - LTR33A LTR ERVL -27 496 299 189 147 0 0 chr3 38233826 38233860 -179803298 + (TA)n Simple_repeat Simple_repeat 1 34 0 495 321 69 33 chr3 38233991 38234424 -179802734 - L1M4 LINE L1 -2644 3502 3047 220 227 0 15 chr3 38234433 38234499 -179802659 + (TA)n Simple_repeat Simple_repeat 2 66 0 307 250 136 21 chr3 38234791 38234931 -179802227 - L1MEd LINE L1 -5283 836 681 2239 135 34 17 chr3 38235124 38235480 -179801678 + THE1B LTR MaLR 1 362 -2 10773 108 33 1 chr3 38235482 38237013 -179800145 + THE1B-int LTR MaLR 1 1580 0 2410 133 11 0 chr3 38237013 38237373 -179799785 + THE1B LTR MaLR 1 364 0 904 188 19 48 chr3 38237470 38237677 -179799481 - MLT1A2 LTR MaLR 0 374 174 320 164 15 0 chr3 38237681 38237748 -179799410 + GA-rich Low_complexity Low_complexity 1 68 0 717 200 48 14 chr3 38237748 38237893 -179799265 - MLT1A2 LTR MaLR -189 176 27 2073 118 0 51 chr3 38239708 38240022 -179797136 - AluSx SINE Alu -14 298 1 1995 143 0 3 chr3 38240871 38241172 -179795986 - AluSc SINE Alu -9 300 1 26 30 0 0 chr3 38242478 38242511 -179794647 + AT_rich Low_complexity Low_complexity 1 33 0 237 310 28 0 chr3 38242584 38242655 -179794503 + HsTC2 DNA Tc2 1 73 -1825 346 255 6 104 chr3 38242713 38242784 -179794374 + HsTC2 DNA Tc2 1144 1220 -678 2636 90 3 0 chr3 38242784 38243138 -179794020 + THE1A LTR MaLR 1 355 0 346 255 6 104 chr3 38243138 38243200 -179793958 + HsTC2 DNA Tc2 1220 1287 -611 5052 73 15 0 chr3 38243200 38243872 -179793286 - L1PA8 LINE L1 0 6172 5491 346 255 6 104 chr3 38243872 38243996 -179793162 + HsTC2 DNA Tc2 1287 1543 -355 256 247 99 12 chr3 38244777 38244858 -179792300 - MIR SINE MIR -74 188 101 8054 37 1 1 chr3 38244858 38245853 -179791305 - L1P LINE L1 -3052 3094 2100 7390 32 6 9 chr3 38245853 38246842 -179790316 + L1PA3 LINE L1 4916 5909 -246 2740 13 0 0 chr3 38246842 38247142 -179790016 - AluYa5 SINE Alu -11 300 1 7390 32 6 9 chr3 38247142 38247389 -179789769 + L1PA3 LINE L1 5909 6155 0 332 321 9 0 chr3 38247865 38247971 -179789187 + MIR3 SINE MIR 102 208 0 728 151 8 0 chr3 38248002 38248121 -179789037 + AluJb SINE Alu 1 120 -192 2075 157 94 0 chr3 38248162 38248557 -179788601 + MSTB1 LTR MaLR 1 432 0 232 254 48 56 chr3 38248696 38248822 -179788336 + MIR SINE MIR 74 198 -64 308 299 29 29 chr3 38249387 38249524 -179787634 - MER5A DNA MER1_type -6 183 47 3861 146 23 0 chr3 38250620 38251271 -179785887 + L1PA16 LINE L1 5496 6161 -5 27 62 0 0 chr3 38251313 38251361 -179785797 + AT_rich Low_complexity Low_complexity 1 48 0 368 289 182 13 chr3 38251718 38251877 -179785281 + MIR SINE MIR 11 196 -66 235 308 128 8 chr3 38253840 38253957 -179783201 - L2 LINE L2 -1 3312 3182 193 222 0 37 chr3 38254110 38254164 -179782994 - L2 LINE L2 -240 3073 3022 337 227 23 31 chr3 38254203 38254331 -179782827 - L1ME4a LINE L1 -5 6116 5990 180 313 62 42 chr3 38254666 38254762 -179782396 + MIR SINE MIR 165 262 0 29 28 0 0 chr3 38254908 38254944 -179782214 + AT_rich Low_complexity Low_complexity 1 36 0 863 309 83 47 chr3 38255136 38255687 -179781471 + MLT1K LTR MaLR 10 580 -8 327 302 87 27 chr3 38257979 38258128 -179779030 + MIR SINE MIR 61 218 -44 504 277 31 31 chr3 38258150 38258309 -179778849 - MIR SINE MIR -28 234 76 222 62 0 0 chr3 38261388 38261420 -179775738 + (TTCC)n Simple_repeat Simple_repeat 1 32 0 2144 133 3 0 chr3 38261420 38261722 -179775436 - AluSx SINE Alu -9 303 1 2294 108 0 13 chr3 38262268 38262583 -179774575 + AluSx SINE Alu 1 311 -1 475 207 0 11 chr3 38263209 38263296 -179773862 + MER5A DNA MER1_type 2 87 -102 187 325 115 58 chr3 38263386 38263577 -179773581 - L3b LINE CR1 -5 1578 1377 1870 165 0 10 chr3 38263685 38263988 -179773170 - AluSx SINE Alu -12 300 1 1657 191 27 12 chr3 38265310 38265646 -179771512 - MER58B DNA MER1_type 0 341 1 316 196 0 0 chr3 38267125 38267181 -179769977 - MER103 DNA DNA -52 114 59 22 35 0 0 chr3 38267383 38267412 -179769746 + AT_rich Low_complexity Low_complexity 1 29 0 1132 144 90 0 chr3 38267767 38267968 -179769190 - MER20 DNA MER1_type 0 219 1 189 107 0 0 chr3 38268966 38268994 -179768164 + (GGGAA)n Simple_repeat Simple_repeat 2 29 0 492 231 22 7 chr3 38270442 38270627 -179766531 - MER58A DNA MER1_type 0 224 5 285 312 0 0 chr3 38271546 38271623 -179765535 + CT-rich Low_complexity Low_complexity 2 78 0 348 278 7 86 chr3 38271707 38271858 -179765300 + L2 LINE L2 2586 2724 -590 277 308 112 0 chr3 38272175 38272282 -179764876 + L2 LINE L2 3190 3308 -5 31 0 0 0 chr3 38272899 38272930 -179764228 + AT_rich Low_complexity Low_complexity 1 31 0 1514 215 3 10 chr3 38272930 38273228 -179763930 - AluJo SINE Alu -16 296 1 260 275 9 9 chr3 38273546 38273655 -179763503 + (TA)n Simple_repeat Simple_repeat 2 110 0 431 284 78 27 chr3 38273770 38274108 -179763050 - MLT1L LTR MaLR -52 563 108 2220 109 0 3 chr3 38274407 38274711 -179762447 + AluSc SINE Alu 1 303 -6 183 129 0 0 chr3 38274808 38274839 -179762319 + (TATG)n Simple_repeat Simple_repeat 2 32 0 211 205 0 0 chr3 38275023 38275062 -179762096 + CT-rich Low_complexity Low_complexity 2 40 0 3377 200 32 20 chr3 38275913 38276668 -179760490 - L1MB3 LINE L1 -2 6181 5418 180 0 0 0 chr3 38276923 38276943 -179760215 + (T)n Simple_repeat Simple_repeat 1 20 0 611 310 10 5 chr3 38276980 38277180 -179759978 - L2 LINE L2 -1 3312 3112 1592 211 141 98 chr3 38277184 38277809 -179759349 - MLT1E1 LTR MaLR -2 652 1 491 289 80 30 chr3 38277921 38278122 -179759036 - L2 LINE L2 -337 2977 2767 2419 172 32 22 chr3 38278274 38278774 -179758384 - L1MC2 LINE L1 -26 6318 5814 1365 180 20 0 chr3 38278791 38279041 -179758117 - L1PA16 LINE L1 -10 6156 5902 267 79 0 0 chr3 38280703 38280741 -179756417 + (CA)n Simple_repeat Simple_repeat 1 38 0 5983 147 73 30 chr3 38280758 38281378 -179755780 - Tigger3b DNA MER2_type -1798 1230 638 2184 125 0 7 chr3 38281378 38281682 -179755476 - AluSx SINE Alu -10 302 1 5983 147 73 30 chr3 38281682 38282240 -179754918 - Tigger3b DNA MER2_type -2390 638 1 2600 62 0 0 chr3 38282361 38282670 -179754488 - AluY SINE Alu -2 309 1 1035 193 18 49 chr3 38282986 38283209 -179753949 + MER58A DNA MER1_type 7 222 -2 196 245 191 11 chr3 38284181 38284275 -179752883 + L2 LINE L2 2170 2280 -1034 435 347 21 7 chr3 38284305 38284449 -179752709 + L2 LINE L2 3123 3268 -4 248 218 0 13 chr3 38284897 38284975 -179752183 + GA-rich Low_complexity Low_complexity 4 80 0 631 268 33 38 chr3 38285147 38285360 -179751798 - MIR SINE MIR -50 212 1 298 345 148 27 chr3 38285378 38285599 -179751559 - MIR SINE MIR -14 248 1 256 48 48 0 chr3 38286789 38286831 -179750327 + (CA)n Simple_repeat Simple_repeat 2 45 0 2171 75 0 0 chr3 38287317 38287584 -179749574 + AluY SINE Alu 34 300 -11 2144 123 0 3 chr3 38288582 38288884 -179748274 - AluSq SINE Alu -12 301 1 531 261 112 21 chr3 38289246 38289434 -179747724 + MIR SINE MIR 57 261 -1 325 306 153 28 chr3 38289625 38289841 -179747317 + LTR16C LTR ERVL 67 309 -182 3889 144 69 90 chr3 38289857 38290773 -179746385 - MER4D LTR ERV1 0 872 1 180 0 0 0 chr3 38290877 38290897 -179746261 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 626 284 7 58 chr3 38290949 38291224 -179745934 + MIR SINE MIR 2 262 0 2241 230 42 76 chr3 38291758 38292332 -179744826 - L1ME2 LINE L1 -1 6163 5571 2273 103 3 0 chr3 38292332 38292634 -179744524 - AluSg SINE Alu -7 303 1 2070 119 7 7 chr3 38292636 38292931 -179744227 - AluSq SINE Alu -18 295 1 2241 230 42 76 chr3 38292931 38292957 -179744201 - L1ME2 LINE L1 -594 5570 5545 2294 87 10 0 chr3 38292957 38293256 -179743902 + AluSp SINE Alu 1 302 -11 2241 230 42 76 chr3 38293256 38293511 -179743647 - L1ME2 LINE L1 -619 5545 5333 1008 326 45 0 chr3 38293744 38294075 -179743083 + LTR16C LTR ERVL 138 483 -8 2198 114 0 0 chr3 38294958 38295248 -179741910 - AluY SINE Alu -21 290 1 352 345 54 37 chr3 38295288 38295584 -179741574 - L2 LINE L2 -979 2335 2035 331 248 200 0 chr3 38298924 38299049 -179738109 + L1MC/D LINE L1 5543 5692 -2116 784 271 77 92 chr3 38299103 38299825 -179737333 - L2 LINE L2 -1 3312 2616 776 290 57 4 chr3 38300087 38300157 -179737001 - MIR SINE MIR 0 262 197 333 0 0 0 chr3 38300157 38300194 -179736964 + (CA)n Simple_repeat Simple_repeat 1 37 0 776 290 57 4 chr3 38300194 38300371 -179736787 - MIR SINE MIR -65 197 2 2096 206 20 39 chr3 38301520 38302031 -179735127 - MLT1D LTR MaLR 0 505 5 180 111 0 0 chr3 38302963 38302990 -179734168 + (T)n Simple_repeat Simple_repeat 1 27 0 180 0 0 0 chr3 38303254 38303274 -179733884 + (A)n Simple_repeat Simple_repeat 1 20 0 765 244 205 21 chr3 38303948 38304085 -179733073 + Charlie2 DNA MER1_type 28 139 -2643 449 229 98 0 chr3 38304085 38304207 -179732951 - MER94 DNA DNA 0 134 1 765 244 205 21 chr3 38304207 38304401 -179732757 + Charlie2 DNA MER1_type 139 420 -2362 476 192 83 0 chr3 38304411 38304531 -179732627 + Charlie2 DNA MER1_type 2729 2858 -4 273 264 47 28 chr3 38304805 38304911 -179732247 - MLT1L LTR MaLR -2 613 506 1384 272 70 93 chr3 38304919 38305519 -179731639 + MLT1G LTR MaLR 10 590 0 295 264 0 0 chr3 38305541 38305613 -179731545 - MLT1L LTR MaLR -131 484 413 2741 135 28 12 chr3 38305752 38306248 -179730910 - L1MA8 LINE L1 -5 7705 7202 910 192 77 0 chr3 38306279 38306461 -179730697 - L1MA8 LINE L1 -709 7001 6806 3784 192 25 15 chr3 38306462 38307347 -179729811 - L1MA8 LINE L1 -2368 5197 4304 589 178 89 6 chr3 38307341 38307498 -179729660 - L1MA8 LINE L1 -3968 3597 3428 * 2367 249 70 12 chr3 38307518 38307613 -179729545 - L1 LINE L1 -3240 3866 3778 381 22 0 0 chr3 38307613 38307659 -179729499 + (TA)n Simple_repeat Simple_repeat 2 47 0 2367 249 70 12 chr3 38307659 38308550 -179728608 - L1 LINE L1 -3328 3778 2815 721 215 0 0 chr3 38308569 38308699 -179728459 - FLAM_C SINE Alu -11 132 3 2676 239 133 45 chr3 38308704 38310119 -179727039 - L1 LINE L1 -4324 2782 1433 2321 173 33 74 chr3 38310119 38310697 -179726461 - MLT2B3 LTR ERVL 0 554 1 2676 239 133 45 chr3 38310697 38311325 -179725833 - L1 LINE L1 -5673 1433 861 269 305 24 0 chr3 38311327 38311409 -179725749 - MLT1L LTR MaLR -531 84 1 27 18 7 0 chr3 38311521 38311597 -179725561 + AT_rich Low_complexity Low_complexity 1 34 0 239 273 0 142 chr3 38311851 38312027 -179725131 - L2 LINE L2 -2 3311 3161 435 358 33 17 chr3 38312122 38312362 -179724796 + MIR SINE MIR 15 258 -4 25 51 0 0 chr3 38313125 38313164 -179723994 + AT_rich Low_complexity Low_complexity 1 39 0 500 231 146 42 chr3 38314143 38314451 -179722707 - L1ME3A LINE L1 -225 5945 5606 365 274 57 5 chr3 38314515 38314727 -179722431 - L1ME3A LINE L1 -786 5360 5138 342 285 93 104 chr3 38315194 38315742 -179721416 - L1MC4a LINE L1 -1914 5894 5353 279 179 18 0 chr3 38317629 38317685 -179719473 - MIR SINE MIR -11 251 195 841 322 79 15 chr3 38317703 38318107 -179719051 - MLT1J2 LTR MaLR -18 432 3 537 306 109 30 chr3 38318127 38318559 -179718599 - L2 LINE L2 -81 3232 2785 586 298 73 15 chr3 38318568 38318773 -179718385 - MIR SINE MIR -37 225 9 229 385 78 8 chr3 38319994 38320117 -179717041 + MIR3 SINE MIR 14 145 -103 296 341 0 0 chr3 38320785 38320870 -179716288 - L2 LINE L2 0 3313 3229 2530 61 0 3 chr3 38321007 38321318 -179715840 - AluY SINE Alu -1 310 1 215 277 96 43 chr3 38321462 38321556 -179715602 + MIR3 SINE MIR 101 199 -9 355 321 75 27 chr3 38321649 38321836 -179715322 + MER117 DNA MER1_type 2 197 0 321 358 15 22 chr3 38322144 38322281 -179714877 + L2 LINE L2 3134 3269 -3 21 0 0 0 chr3 38324144 38324165 -179712993 + AT_rich Low_complexity Low_complexity 1 21 0 378 333 48 0 chr3 38324730 38324898 -179712260 - MIR SINE MIR -3 259 84 360 88 18 0 chr3 38327242 38327299 -179709859 + THE1B-int LTR MaLR 1523 1580 0 2297 109 22 30 chr3 38327299 38327666 -179709492 + THE1B LTR MaLR 1 364 0 634 289 83 8 chr3 38328055 38328297 -179708861 - MIR SINE MIR 0 262 3 355 264 132 18 chr3 38328479 38328646 -179708512 - MLT1J LTR MaLR -317 194 9 794 232 95 93 chr3 38329420 38329930 -179707228 - L2 LINE L2 -72 3241 2733 4267 324 43 18 chr3 38330139 38332816 -179704342 - ERVL LTR ERVL -358 5406 2625 1206 313 110 20 chr3 38332828 38333435 -179703723 - L2 LINE L2 -1078 2236 1575 429 20 0 0 chr3 38333608 38333658 -179703500 + (CA)n Simple_repeat Simple_repeat 2 51 0 1065 211 36 36 chr3 38334063 38334286 -179702872 - MER58A DNA MER1_type -1 223 1 2150 118 3 0 chr3 38334524 38334821 -179702337 + AluSx SINE Alu 1 298 -14 32 26 0 0 chr3 38334910 38334949 -179702209 + AT_rich Low_complexity Low_complexity 1 39 0 384 389 83 15 chr3 38335261 38335585 -179701573 + MLT1K LTR MaLR 82 427 -161 3588 52 4 4 chr3 38336039 38336503 -179700655 - L1PA8 LINE L1 0 6172 5709 302 288 54 9 chr3 38336606 38336717 -179700441 - MIR SINE MIR -30 232 117 192 200 0 0 chr3 38336731 38336761 -179700397 + MIR SINE MIR 116 145 -63 736 302 35 16 chr3 38337127 38337382 -179699776 + MIR SINE MIR 2 261 -1 463 259 97 21 chr3 38338934 38339815 -179697343 - HAL1 LINE L1 -100 2407 1278 216 330 55 0 chr3 38339823 38339914 -179697244 - L2 LINE L2 -503 2811 2716 775 298 123 11 chr3 38340019 38340546 -179696612 - L1MC4a LINE L1 -1642 6166 5581 2395 94 0 3 chr3 38340551 38340860 -179696298 - AluSq SINE Alu -5 308 1 324 285 24 32 chr3 38340880 38341003 -179696155 + MIR SINE MIR 4 125 -137 626 305 64 84 chr3 38341157 38341704 -179695454 - L2 LINE L2 -1615 1699 1164 244 210 62 49 chr3 38341911 38341992 -179695166 + MIR SINE MIR 171 252 -10 181 171 114 0 chr3 38341962 38341997 -179695161 + L2 LINE L2 3268 3306 -7 * 288 284 0 0 chr3 38343019 38343086 -179694072 + L2 LINE L2 3247 3313 0 21 82 0 0 chr3 38344205 38344254 -179692904 + AT_rich Low_complexity Low_complexity 1 49 0 2041 245 103 21 chr3 38344526 38345155 -179692003 - L1ME1 LINE L1 -2 6164 5484 306 50 0 0 chr3 38345162 38345202 -179691956 + (TC)n Simple_repeat Simple_repeat 1 40 0 1125 183 68 0 chr3 38345232 38345423 -179691735 - AluJo SINE Alu -108 204 1 437 162 33 0 chr3 38345424 38345578 -179691580 + CT-rich Low_complexity Low_complexity 1 159 0 2433 236 61 40 chr3 38345612 38345912 -179691246 - L1ME1 LINE L1 -706 5460 5168 2142 137 0 0 chr3 38345912 38346218 -179690940 - AluSx SINE Alu -6 306 1 2433 236 61 40 chr3 38346218 38346894 -179690264 - L1ME1 LINE L1 -998 5168 4463 322 312 71 0 chr3 38347196 38347320 -179689838 - MIR SINE MIR -56 152 18 200 94 0 31 chr3 38347416 38347448 -179689710 + (TTTC)n Simple_repeat Simple_repeat 4 34 0 22 35 0 0 chr3 38347739 38347768 -179689390 + AT_rich Low_complexity Low_complexity 1 29 0 2394 251 38 56 chr3 38348015 38348120 -179689038 - L2 LINE L2 -48 3265 3160 2117 110 0 0 chr3 38348120 38348439 -179688719 + AluSg SINE Alu 1 319 0 1551 186 7 26 chr3 38348445 38348752 -179688406 + AluJb SINE Alu 1 301 -11 2394 251 38 56 chr3 38348752 38349644 -179687514 - L2 LINE L2 -158 3155 2274 328 312 14 64 chr3 38349601 38349742 -179687416 + MIR SINE MIR 8 141 -121 * 392 231 0 100 chr3 38349957 38350021 -179687137 - L2 LINE L2 -1035 2279 2233 2032 104 49 3 chr3 38350021 38350309 -179686849 - AluSg SINE Alu -7 303 3 392 231 0 100 chr3 38350309 38350374 -179686784 - L2 LINE L2 -1081 2233 2163 2067 112 6 19 chr3 38350455 38350796 -179686362 - AluY SINE Alu 0 311 1 286 247 80 87 chr3 38351734 38351953 -179685205 - MIR SINE MIR -34 228 7 234 267 50 40 chr3 38352305 38352406 -179684752 + L1MC4 LINE L1 6605 6706 -1336 26 98 0 0 chr3 38352482 38352564 -179684594 + AT_rich Low_complexity Low_complexity 1 82 0 226 23 45 114 chr3 38352564 38352652 -179684506 + (TTAA)n Simple_repeat Simple_repeat 2 83 0 379 206 54 11 chr3 38352685 38352777 -179684381 - L1ME3 LINE L1 -66 6096 6001 405 254 0 18 chr3 38352838 38352952 -179684206 - L1ME3 LINE L1 -450 5712 5601 453 302 45 45 chr3 38352962 38353207 -179683951 + L3b LINE CR1 1117 1361 -222 670 315 65 0 chr3 38353608 38353840 -179683318 + L1ME LINE L1 7 253 -5817 266 253 60 12 chr3 38354176 38354259 -179682899 + MER91C DNA MER1_type 31 117 -23 373 326 126 7 chr3 38354282 38354417 -179682741 - MER91A DNA MER1_type -45 151 1 1446 254 129 24 chr3 38354887 38355425 -179681733 - MLT1E2 LTR MaLR 0 505 1 2771 164 182 39 chr3 38355736 38356455 -179680703 - LTR1B LTR ERV1 -4 822 1 375 274 18 35 chr3 38356456 38356569 -179680589 - L2 LINE L2 -15 3298 3188 492 144 4 1 chr3 38358271 38358500 -179678658 + AluSc SINE Alu 36 297 -12 198 346 25 12 chr3 38358502 38358583 -179678575 - MIR SINE MIR -86 122 41 28 0 0 0 chr3 38358955 38358983 -179678175 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr3 38360711 38360735 -179676423 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1298 226 76 100 chr3 38360737 38361214 -179675944 + L1MC4 LINE L1 7345 7801 -241 2391 93 0 3 chr3 38361214 38361526 -179675632 + AluY SINE Alu 1 311 0 1298 226 76 100 chr3 38361526 38361761 -179675397 + L1MC4 LINE L1 7801 8040 -2 667 291 147 39 chr3 38361886 38362685 -179674473 + L2 LINE L2 2424 3312 -1 631 266 89 30 chr3 38362703 38363097 -179674061 - LTR33A LTR ERVL -4 519 66 2217 176 31 10 chr3 38363876 38364291 -179672867 + MSTB LTR MaLR 1 424 -2 192 316 11 32 chr3 38365287 38365382 -179671776 - MIR SINE MIR -38 224 132 2386 82 0 7 chr3 38365670 38365974 -179671184 + AluSp SINE Alu 1 302 -11 387 348 27 11 chr3 38366060 38366247 -179670911 - MIR3 SINE MIR 0 208 19 24 53 0 0 chr3 38366349 38366387 -179670771 + AT_rich Low_complexity Low_complexity 1 38 0 2090 119 0 45 chr3 38366447 38366759 -179670399 - AluSx SINE Alu -14 298 1 1591 127 92 50 chr3 38367169 38367452 -179669706 + AluSx SINE Alu 1 295 -17 489 76 0 0 chr3 38367455 38367521 -179669637 + (CA)n Simple_repeat Simple_repeat 2 67 0 23 54 0 0 chr3 38369104 38369141 -179668017 + AT_rich Low_complexity Low_complexity 1 37 0 419 315 34 0 chr3 38369761 38369910 -179667248 - MIR SINE MIR -35 227 74 474 240 50 75 chr3 38370208 38370408 -179666750 - LTR16A1 LTR ERVL 0 457 263 26 0 0 0 chr3 38370679 38370705 -179666453 + AT_rich Low_complexity Low_complexity 1 26 0 1989 131 0 0 chr3 38370705 38370979 -179666179 - AluSx SINE Alu -36 276 3 183 42 0 0 chr3 38371981 38372005 -179665153 + (CTTA)n Simple_repeat Simple_repeat 1 24 0 375 353 65 56 chr3 38372432 38372769 -179664389 + L2 LINE L2 2836 3175 -97 1067 217 65 70 chr3 38372903 38373258 -179663900 - LTR16A1 LTR ERVL -6 451 99 423 161 0 12 chr3 38373342 38373423 -179663735 + MADE1 DNA Mariner 1 80 0 326 200 0 0 chr3 38373446 38373506 -179663652 - MIR SINE MIR -12 250 191 289 265 24 112 chr3 38373638 38373808 -179663350 - MER104 DNA Tc2 -4 176 22 975 254 89 106 chr3 38375589 38376388 -179660770 - L2 LINE L2 -4 3309 2516 1903 171 3 20 chr3 38376469 38376819 -179660339 - MER2 DNA MER2_type 0 344 1 1104 307 83 7 chr3 38378090 38378546 -179658612 - L2 LINE L2 -5 3308 2818 866 193 0 6 chr3 38378649 38378810 -179658348 - L1PB4 LINE L1 -7 6149 5990 666 289 62 19 chr3 38379099 38379419 -179657739 + MLT1L LTR MaLR 74 327 -184 204 267 300 0 chr3 38381531 38381621 -179655537 - L2 LINE L2 -19 3294 3178 363 44 0 0 chr3 38381741 38381786 -179655372 + (CA)n Simple_repeat Simple_repeat 2 46 0 879 123 8 0 chr3 38383677 38383799 -179653359 + FLAM_C SINE Alu 1 123 -20 372 22 0 0 chr3 38383802 38383847 -179653311 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 532 151 0 0 chr3 38385247 38385340 -179651818 + L1MA1 LINE L1 6066 6158 -144 320 74 56 0 chr3 38385340 38385392 -179651766 + L1MA3 LINE L1 6249 6305 0 609 250 155 14 chr3 38385488 38385772 -179651386 - MER5C DNA MER1_type 0 324 1 637 163 35 99 chr3 38386197 38386399 -179650759 + MER53 DNA DNA 1 189 0 1854 193 100 0 chr3 38386898 38387287 -179649871 - MSTA LTR MaLR 0 428 1 337 221 202 38 chr3 38387675 38387992 -179649166 - L1ME4a LINE L1 -25 6096 5728 1756 218 19 36 chr3 38388179 38388592 -179648566 - MLT2D LTR ERVL -8 406 1 292 287 52 22 chr3 38388831 38388967 -179648191 + MIR SINE MIR 65 204 -58 1743 210 8 24 chr3 38389023 38389394 -179647764 - MLT1A1 LTR MaLR 0 365 1 1216 177 32 8 chr3 38389693 38389941 -179647217 + Tigger7 DNA MER2_type 2237 2490 -1 363 322 81 0 chr3 38389943 38390117 -179647041 - L2 LINE L2 0 3313 3126 324 277 98 18 chr3 38390311 38390423 -179646735 - MLT1I LTR MaLR -218 191 71 298 287 0 8 chr3 38390596 38390718 -179646440 - MER113 DNA MER1_type? -394 127 7 22 0 0 0 chr3 38391116 38391138 -179646020 + AT_rich Low_complexity Low_complexity 1 22 0 2225 113 0 0 chr3 38391358 38391649 -179645509 - AluSp SINE Alu -22 291 1 2080 141 0 0 chr3 38391872 38392171 -179644987 + AluSx SINE Alu 3 301 -11 406 321 70 21 chr3 38393007 38393194 -179643964 + L2 LINE L2 2782 2977 -337 221 258 287 18 chr3 38393207 38393374 -179643784 - MIR SINE MIR -12 250 39 408 337 68 40 chr3 38393475 38393727 -179643431 + L2 LINE L2 3031 3289 -24 491 307 177 36 chr3 38393783 38394295 -179642863 - L2 LINE L2 -5 3308 2736 184 219 0 0 chr3 38394357 38394389 -179642769 - MIR SINE MIR -114 148 117 180 0 0 0 chr3 38395140 38395160 -179641998 + (T)n Simple_repeat Simple_repeat 1 20 0 226 250 19 0 chr3 38395429 38395481 -179641677 + CT-rich Low_complexity Low_complexity 2 54 0 552 213 0 0 chr3 38395891 38396013 -179641145 + T-rich Low_complexity Low_complexity 1 122 0 211 139 23 0 chr3 38396254 38396297 -179640861 + T-rich Low_complexity Low_complexity 2 45 0 222 37 0 0 chr3 38399633 38399660 -179637498 + (T)n Simple_repeat Simple_repeat 1 27 0 22 35 0 0 chr3 38402591 38402620 -179634538 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 38402817 38402839 -179634319 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr3 38407255 38407280 -179629878 + AT_rich Low_complexity Low_complexity 1 25 0 214 317 0 0 chr3 38408752 38408834 -179628324 + T-rich Low_complexity Low_complexity 1 82 0 747 120 0 0 chr3 38410182 38410299 -179626859 + (TA)n Simple_repeat Simple_repeat 2 118 0 206 274 121 81 chr3 38413786 38413910 -179623248 - L2 LINE L2 -6 3266 3138 21 36 0 0 chr3 38414481 38414509 -179622649 + AT_rich Low_complexity Low_complexity 1 28 0 1201 180 0 9 chr3 38414536 38414747 -179622411 - MER2 DNA MER2_type -136 209 1 741 283 115 49 chr3 38414876 38415513 -179621645 + L1ME4a LINE L1 5282 5960 -161 215 379 79 11 chr3 38415958 38416148 -179621010 - L2 LINE L2 -946 2368 2166 223 186 34 17 chr3 38416523 38416582 -179620576 + (TTTG)n Simple_repeat Simple_repeat 1 60 0 614 293 30 0 chr3 38416636 38416803 -179620355 - MER5A DNA MER1_type 0 189 18 22 0 0 0 chr3 38416907 38416929 -179620229 + AT_rich Low_complexity Low_complexity 1 22 0 1760 172 7 10 chr3 38416930 38417220 -179619938 - AluJo SINE Alu -23 289 1 21 0 0 0 chr3 38417299 38417320 -179619838 + AT_rich Low_complexity Low_complexity 1 21 0 229 307 13 27 chr3 38418086 38418161 -179618997 - MIR3 SINE MIR -7 201 128 2404 107 6 8 chr3 38418674 38419028 -179618130 - THE1A LTR MaLR -2 353 1 851 287 106 51 chr3 38419895 38420369 -179616789 + L2 LINE L2 2812 3311 -2 204 40 0 0 chr3 38421358 38421383 -179615775 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 26 64 0 0 chr3 38422785 38422832 -179614326 + AT_rich Low_complexity Low_complexity 1 47 0 261 241 0 0 chr3 38423198 38423252 -179613906 - L2 LINE L2 -5 3267 3214 248 309 0 0 chr3 38423293 38423348 -179613810 + L2 LINE L2 3198 3252 -20 213 65 0 0 chr3 38423645 38423676 -179613482 + (A)n Simple_repeat Simple_repeat 1 31 0 260 354 96 51 chr3 38423748 38424217 -179612941 - L2 LINE L2 -505 2809 2320 26 30 0 0 chr3 38424269 38424302 -179612856 + AT_rich Low_complexity Low_complexity 1 33 0 228 246 14 43 chr3 38424350 38424419 -179612739 - MIR SINE MIR -61 201 135 271 322 126 45 chr3 38424469 38425217 -179611941 - L2 LINE L2 -1150 2164 1357 216 167 0 0 chr3 38425823 38425859 -179611299 + (CAAAG)n Simple_repeat Simple_repeat 2 37 0 312 250 11 0 chr3 38426985 38427073 -179610085 - MER103 DNA DNA -71 95 7 419 299 11 17 chr3 38427449 38427626 -179609532 + CT-rich Low_complexity Low_complexity 1 176 0 263 231 222 9 chr3 38429282 38429390 -179607768 - MIR SINE MIR -104 158 28 192 261 15 62 chr3 38480533 38480598 -179556560 - L2 LINE L2 -2 3311 3250 707 307 12 16 chr3 38481097 38481348 -179555810 - MIR SINE MIR 0 262 13 2635 50 0 0 chr3 38481935 38482237 -179554921 + AluY SINE Alu 1 302 -9 296 140 20 0 chr3 38482315 38482365 -179554793 + MIR SINE MIR 91 141 -121 388 229 119 17 chr3 38482922 38483040 -179554118 - MIR3 SINE MIR -5 203 74 237 125 0 0 chr3 38483471 38483503 -179553655 - MLT1G1 LTR MaLR -319 276 245 234 302 112 26 chr3 38486775 38486891 -179550267 - L2 LINE L2 -225 3047 2922 2076 104 11 4 chr3 38487033 38487313 -179549845 + AluSq SINE Alu 1 282 -31 489 17 0 0 chr3 38487313 38487371 -179549787 + (CATA)n Simple_repeat Simple_repeat 1 58 0 464 268 33 58 chr3 38490201 38490375 -179546783 + MER69A DNA AcHobo 6 176 -1 1192 279 147 14 chr3 38490378 38490801 -179546357 + MER69 DNA AcHobo 89 567 -659 1284 222 84 23 chr3 38490852 38491280 -179545878 + MER69 DNA AcHobo 2073 2526 0 305 284 12 0 chr3 38494386 38494467 -179542691 - MER63 DNA MER1_type -2 1060 979 264 30 0 0 chr3 38494500 38494533 -179542625 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2375 79 0 28 chr3 38494766 38495084 -179542074 + AluY SINE Alu 1 309 -2 453 288 187 14 chr3 38495930 38496149 -179541009 - MIR SINE MIR 0 262 6 30 45 0 0 chr3 38496517 38496561 -179540597 + AT_rich Low_complexity Low_complexity 1 44 0 872 223 9 28 chr3 38497565 38497776 -179539382 + MER3 DNA MER1_type 2 208 -1 728 309 18 9 chr3 38497810 38498027 -179539131 + MIR SINE MIR 41 259 -3 464 250 17 0 chr3 38498192 38498308 -179538850 - MER94 DNA DNA -1 133 16 1702 110 9 100 chr3 38499005 38499324 -179537834 + AluSq SINE Alu 1 290 -23 1374 120 0 29 chr3 38499397 38499606 -179537552 + AluSg/x SINE Alu 105 307 -5 393 261 232 19 chr3 38500786 38500997 -179536161 - MIR SINE MIR -6 256 1 1081 179 5 33 chr3 38502134 38502346 -179534812 + MER20 DNA MER1_type 2 207 -12 654 218 158 0 chr3 38503039 38503204 -179533954 + MIR SINE MIR 24 214 -48 279 0 0 0 chr3 38503877 38503908 -179533250 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2247 112 7 0 chr3 38505229 38505534 -179531624 - AluSc SINE Alu -2 307 1 1872 172 0 13 chr3 38505655 38505969 -179531189 - AluJb SINE Alu 0 312 3 316 347 75 19 chr3 38506510 38506777 -179530381 - L2 LINE L2 -15 3298 2964 503 315 61 20 chr3 38507436 38507633 -179529525 - MIR SINE MIR -16 246 42 894 188 32 28 chr3 38507811 38508029 -179529129 + MER20 DNA MER1_type 1 219 0 222 118 0 0 chr3 38508739 38508773 -179528385 + (CAG)n Simple_repeat Simple_repeat 1 34 0 2151 51 3 111 chr3 38509600 38509932 -179527226 + AluY SINE Alu 1 296 -15 24 0 0 0 chr3 38510355 38510379 -179526779 + AT_rich Low_complexity Low_complexity 1 24 0 491 241 52 0 chr3 38510678 38510794 -179526364 - MER5A DNA MER1_type -31 158 37 301 280 10 10 chr3 38510915 38511015 -179526143 + MIR3 SINE MIR 82 181 -27 523 218 29 45 chr3 38511018 38511198 -179525960 - MER63A DNA MER1_type 0 210 33 320 414 6 6 chr3 38511616 38511778 -179525380 + MIR3 SINE MIR 32 193 -15 306 0 0 0 chr3 38511972 38512006 -179525152 + (TC)n Simple_repeat Simple_repeat 1 34 0 342 340 61 30 chr3 38512888 38513262 -179523896 - L2 LINE L2 -247 3066 2682 1262 40 0 0 chr3 38513553 38513703 -179523455 - L1PA3 LINE L1 -2 6153 6004 415 295 184 0 chr3 38515330 38515537 -179521621 - MIR SINE MIR -5 257 13 537 256 75 19 chr3 38515578 38515738 -179521420 - MER5B DNA MER1_type -4 174 6 190 294 20 0 chr3 38517239 38517290 -179519868 - L2 LINE L2 0 3272 3221 950 286 37 80 chr3 38517604 38518115 -179519043 - L2 LINE L2 -640 2674 2186 625 311 44 13 chr3 38518130 38518355 -179518803 - MIR SINE MIR -27 235 4 668 286 73 36 chr3 38518357 38518686 -179518472 - L2 LINE L2 -1135 2179 1839 216 0 0 0 chr3 38518732 38518756 -179518402 + (T)n Simple_repeat Simple_repeat 1 24 0 223 239 33 33 chr3 38518816 38518908 -179518250 + (TCTCTG)n Simple_repeat Simple_repeat 4 95 0 482 225 28 14 chr3 38519853 38519995 -179517163 - L1ME2 LINE L1 -1 6333 6022 217 267 81 29 chr3 38520085 38520221 -179516937 + MIR SINE MIR 23 262 0 2208 108 7 0 chr3 38520850 38521156 -179516002 - AluSq SINE Alu -5 308 1 216 388 0 0 chr3 38521369 38521454 -179515704 + MIR SINE MIR 18 102 -160 461 247 10 0 chr3 38522320 38522417 -179514741 - MER81 DNA DNA 0 114 17 343 242 51 101 chr3 38522424 38522602 -179514556 - MIR SINE MIR -57 205 37 240 324 20 20 chr3 38523926 38524028 -179513130 + MIR SINE MIR 31 132 -76 344 71 18 0 chr3 38524559 38524615 -179512543 + (CA)n Simple_repeat Simple_repeat 2 58 0 275 338 48 35 chr3 38524618 38524763 -179512395 + L2 LINE L2 3123 3269 -3 2879 192 11 73 chr3 38529055 38529749 -179507409 + MER82 DNA MER2_type 2 652 -1 26 30 0 0 chr3 38529841 38529874 -179507284 + AT_rich Low_complexity Low_complexity 1 33 0 424 356 42 93 chr3 38530790 38531106 -179506052 + L2 LINE L2 2437 2767 -505 1914 152 3 0 chr3 38531106 38531396 -179505762 + AluSx SINE Alu 1 291 -21 424 356 42 93 chr3 38531396 38531910 -179505248 + L2 LINE L2 2767 3237 -35 1153 216 107 28 chr3 38532054 38532373 -179504785 + MER2 DNA MER2_type 2 345 0 197 339 89 16 chr3 38533232 38533356 -179503802 - L2 LINE L2 -1 3271 3139 440 327 216 7 chr3 38533522 38533828 -179503330 - L3 LINE CR1 -4 1573 1204 595 203 86 63 chr3 38533896 38534118 -179503040 - MER112 DNA MER1_type -6 254 28 318 274 95 0 chr3 38534151 38534246 -179502912 - MER5A DNA MER1_type -85 104 1 236 210 25 12 chr3 38534343 38534424 -179502734 - Charlie7 DNA MER1_type -2474 138 57 287 198 33 66 chr3 38535357 38535414 -179501744 + MIR SINE MIR 67 121 -141 2231 77 3 68 chr3 38535414 38535740 -179501418 - AluY SINE Alu -6 305 1 287 198 33 66 chr3 38535740 38535773 -179501385 + MIR SINE MIR 121 154 -108 22 35 0 0 chr3 38539062 38539091 -179498067 + AT_rich Low_complexity Low_complexity 1 29 0 497 226 28 0 chr3 38541164 38541270 -179495888 - MER5A DNA MER1_type -77 112 4 365 340 11 54 chr3 38542980 38543259 -179493899 + L1ME3A LINE L1 5618 5884 -286 27 49 0 0 chr3 38543521 38543562 -179493596 + AT_rich Low_complexity Low_complexity 1 41 0 284 206 56 0 chr3 38543569 38543676 -179493482 + (TA)n Simple_repeat Simple_repeat 2 114 0 265 222 43 31 chr3 38543616 38543778 -179493380 + (TATAA)n Simple_repeat Simple_repeat 2 165 0 * 1174 208 4 17 chr3 38544532 38544763 -179492395 + AluJo SINE Alu 2 229 -83 585 217 59 13 chr3 38546115 38546267 -179490891 - L1ME3A LINE L1 -8 6162 6004 1885 122 7 11 chr3 38546268 38546539 -179490619 - AluSx SINE Alu -12 300 31 4521 123 106 91 chr3 38546542 38548133 -179489025 - pTR5 LTR ERV1 0 2438 750 229 150 125 0 chr3 38548133 38548173 -179488985 - AluSx SINE Alu -254 46 2 940 229 146 3 chr3 38548175 38548463 -179488695 - L1ME3A LINE L1 -159 6011 5683 2049 151 0 3 chr3 38549311 38549623 -179487535 - AluSx SINE Alu -1 311 1 24 0 0 0 chr3 38550816 38550840 -179486318 + AT_rich Low_complexity Low_complexity 1 24 0 270 0 0 0 chr3 38551527 38551557 -179485601 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 224 98 0 24 chr3 38551607 38551648 -179485510 + (CAATA)n Simple_repeat Simple_repeat 3 42 0 1959 160 0 10 chr3 38551828 38552141 -179485017 - AluJb SINE Alu -1 311 2 2024 190 6 3 chr3 38552285 38552649 -179484509 - MLT1A1 LTR MaLR 0 365 1 260 346 109 19 chr3 38553135 38553346 -179483812 + MIR SINE MIR 20 249 -13 257 119 30 30 chr3 38553349 38553416 -179483742 + (TATATG)n Simple_repeat Simple_repeat 5 71 0 27 0 0 0 chr3 38553594 38553621 -179483537 + AT_rich Low_complexity Low_complexity 1 27 0 380 361 87 0 chr3 38553813 38554021 -179483137 + Charlie8 DNA MER1_type 40 265 -2152 261 339 32 26 chr3 38554081 38554270 -179482888 - L2 LINE L2 -940 2374 2185 404 229 57 10 chr3 38554278 38554418 -179482740 + MER5A DNA MER1_type 1 188 -1 877 278 8 4 chr3 38555059 38555293 -179481865 + MIR SINE MIR 21 255 -7 371 373 93 10 chr3 38555965 38556158 -179481000 - MIR SINE MIR -34 228 20 2377 97 0 0 chr3 38556770 38557078 -179480080 - AluSg SINE Alu -2 308 1 1893 46 8 17 chr3 38557168 38557409 -179479749 + AluY SINE Alu 73 311 0 726 219 62 6 chr3 38557491 38557669 -179479489 + MER5A DNA MER1_type 1 188 -1 1908 173 68 0 chr3 38558310 38558675 -179478483 - MLT1B LTR MaLR 0 390 1 344 248 74 8 chr3 38561684 38561805 -179475353 - MIR SINE MIR 0 262 134 31 76 0 0 chr3 38561812 38561878 -179475280 + AT_rich Low_complexity Low_complexity 1 66 0 198 400 0 0 chr3 38561935 38562005 -179475153 - MIR SINE MIR -191 71 2 347 256 23 47 chr3 38562078 38562207 -179474951 - MIR SINE MIR -116 146 21 2350 99 0 0 chr3 38563836 38564138 -179473020 + AluSg SINE Alu 2 303 -7 63 0 0 0 chr3 38564202 38564265 -179472893 + AT_rich Low_complexity Low_complexity 1 63 0 257 258 67 11 chr3 38565422 38565511 -179471647 + Charlie7 DNA MER1_type 8 101 -2511 267 258 0 15 chr3 38565653 38565719 -179471439 + GA-rich Low_complexity Low_complexity 2 66 0 2435 74 0 0 chr3 38565784 38566082 -179471076 + AluY SINE Alu 1 298 -13 914 273 98 43 chr3 38566449 38566867 -179470291 - L2 LINE L2 -2514 800 360 551 234 94 57 chr3 38567371 38567563 -179469595 + MIR SINE MIR 14 212 -50 21 0 0 0 chr3 38567651 38567672 -179469486 + AT_rich Low_complexity Low_complexity 1 21 0 2124 105 23 13 chr3 38569482 38569788 -179467370 - AluSx SINE Alu -1 311 3 255 103 0 0 chr3 38570268 38570307 -179466851 + (A)n Simple_repeat Simple_repeat 1 39 0 2029 117 45 0 chr3 38571088 38571378 -179465780 - AluY SINE Alu -8 303 1 2494 83 0 0 chr3 38572056 38572368 -179464790 - AluSx SINE Alu 0 312 1 234 232 18 0 chr3 38572690 38572746 -179464412 + MIR SINE MIR 90 146 -62 198 0 0 0 chr3 38573457 38573479 -179463679 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 226 155 28 0 chr3 38574486 38574550 -179462608 + (TA)n Simple_repeat Simple_repeat 2 70 -4 2019 148 45 0 chr3 38574550 38574882 -179462276 + MER7A DNA MER2_type 2 346 0 226 155 28 0 chr3 38574882 38574888 -179462270 + (TA)n Simple_repeat Simple_repeat 70 74 0 225 0 0 0 chr3 38574912 38574937 -179462221 + (TG)n Simple_repeat Simple_repeat 2 26 0 276 268 14 0 chr3 38576200 38576271 -179460887 + Charlie8 DNA MER1_type 2341 2412 -5 204 304 29 0 chr3 38576319 38576388 -179460770 - MIR SINE MIR -106 156 86 33 43 0 0 chr3 38578523 38578570 -179458588 + AT_rich Low_complexity Low_complexity 1 47 0 10562 174 30 11 chr3 38578578 38579581 -179457577 - L1M2 LINE L1 -549 5742 4760 213 65 0 0 chr3 38579581 38579612 -179457546 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 10562 174 30 11 chr3 38579612 38581240 -179455918 - L1M2 LINE L1 -1531 4760 3057 232 305 188 8 chr3 38581661 38581789 -179455369 + L2 LINE L2 3117 3267 -5 22 0 0 0 chr3 38581805 38581827 -179455331 + AT_rich Low_complexity Low_complexity 1 22 0 6728 68 17 0 chr3 38582275 38583192 -179453966 - L1PA7 LINE L1 0 6154 5226 228 337 105 0 chr3 38583207 38583293 -179453865 - MER91C DNA MER1_type -45 95 1 396 344 160 5 chr3 38583415 38583627 -179453531 - MIR SINE MIR 0 262 18 186 294 98 33 chr3 38583907 38583999 -179453159 + L2 LINE L2 3174 3271 -1 1197 155 33 69 chr3 38584578 38584823 -179452335 - MER46A DNA MER2_type 0 236 1 2027 132 7 3 chr3 38585083 38585386 -179451772 + AluSg SINE Alu 1 304 -6 231 271 0 17 chr3 38588080 38588139 -179449019 + L2 LINE L2 3188 3245 -27 316 139 0 28 chr3 38588694 38588766 -179448392 + (TA)n Simple_repeat Simple_repeat 2 71 0 230 183 0 17 chr3 38588774 38588834 -179448324 - L1MCa LINE L1 -4362 2064 2006 190 137 0 39 chr3 38588842 38588893 -179448265 + (TA)n Simple_repeat Simple_repeat 2 50 0 521 295 128 13 chr3 38588916 38589150 -179448008 - MIR SINE MIR 0 262 2 192 411 6 25 chr3 38589203 38589366 -179447792 - L2 LINE L2 -209 3063 2904 232 374 64 28 chr3 38590056 38590414 -179446744 - L2 LINE L2 -692 2622 2252 574 176 50 0 chr3 38590516 38590635 -179446523 - AluJb SINE Alu 0 312 188 617 193 0 0 chr3 38590675 38590784 -179446374 - FLAM_C SINE Alu -34 109 1 1669 183 7 7 chr3 38590997 38591298 -179445860 + AluJb SINE Alu 1 301 -11 333 0 0 0 chr3 38591338 38591375 -179445783 + (TG)n Simple_repeat Simple_repeat 2 38 0 2360 86 0 3 chr3 38591386 38591689 -179445469 - AluY SINE Alu -9 302 1 212 294 0 44 chr3 38592171 38592239 -179444919 - L2 LINE L2 0 3272 3208 239 253 132 0 chr3 38593185 38593276 -179443882 + L1ME LINE L1 5547 5649 -472 796 134 37 43 chr3 38593965 38594152 -179443006 - MER53 DNA DNA -2 187 2 1219 197 58 7 chr3 38594202 38594497 -179442661 + MER33 DNA MER1_type 15 324 0 527 203 98 130 chr3 38594985 38595301 -179441857 + L2 LINE L2 2946 3251 -62 234 317 48 10 chr3 38595488 38595592 -179441566 - L2 LINE L2 -22 3291 3184 717 283 85 0 chr3 38595712 38595935 -179441223 - MIR SINE MIR -16 246 5 684 283 102 76 chr3 38596113 38596257 -179440901 - LTR33A LTR ERVL -6 517 378 2163 116 0 3 chr3 38596257 38596560 -179440598 - AluSx SINE Alu -10 302 1 684 283 102 76 chr3 38596560 38596878 -179440280 - LTR33A LTR ERVL -145 378 43 739 280 62 4 chr3 38597042 38597267 -179439891 - MIR SINE MIR -23 239 2 227 209 58 81 chr3 38597281 38597367 -179439791 + L2 LINE L2 3184 3267 -5 1616 189 0 26 chr3 38597791 38598104 -179439054 - AluJo SINE Alu -7 305 1 2091 119 0 49 chr3 38598482 38598810 -179438348 - AluSx SINE Alu 0 312 1 1300 197 33 33 chr3 38598838 38599137 -179438021 + AluJo SINE Alu 1 299 -13 21 36 0 0 chr3 38599333 38599361 -179437797 + AT_rich Low_complexity Low_complexity 1 28 0 386 260 175 19 chr3 38600149 38600303 -179436855 + MER5A DNA MER1_type 9 186 -3 2713 35 0 3 chr3 38600305 38600617 -179436541 + AluY SINE Alu 1 311 0 307 246 169 8 chr3 38600753 38600883 -179436275 - L3 LINE CR1 -214 1363 1213 223 259 12 25 chr3 38600887 38600968 -179436190 + CT-rich Low_complexity Low_complexity 2 81 0 261 0 0 0 chr3 38601248 38601277 -179435881 + (A)n Simple_repeat Simple_repeat 1 29 0 1135 36 0 0 chr3 38601793 38601930 -179435228 - L1PA5 LINE L1 -83 6071 5935 470 48 0 0 chr3 38601931 38601994 -179435164 + L1PA6 LINE L1 6090 6152 -2 23 0 0 0 chr3 38601994 38602017 -179435141 + AT_rich Low_complexity Low_complexity 1 23 0 2214 125 0 0 chr3 38602175 38602479 -179434679 - AluSx SINE Alu -8 304 1 2067 114 0 34 chr3 38602808 38603105 -179434053 - AluSq SINE Alu -21 292 6 21 36 0 0 chr3 38603657 38603685 -179433473 + AT_rich Low_complexity Low_complexity 1 28 0 181 291 81 12 chr3 38603707 38603793 -179433365 + L3b LINE CR1 1300 1391 -192 2156 98 0 39 chr3 38604647 38604953 -179432205 + AluSg SINE Alu 2 295 -15 509 254 188 0 chr3 38605257 38605395 -179431763 + MER5A DNA MER1_type 20 183 -6 198 184 0 82 chr3 38606101 38606150 -179431008 + L2 LINE L2 3216 3260 -12 354 45 0 0 chr3 38606304 38606348 -179430810 + (TA)n Simple_repeat Simple_repeat 2 45 0 1030 180 23 46 chr3 38606584 38606801 -179430357 + AluJo SINE Alu 77 288 -24 1726 186 0 14 chr3 38607262 38607558 -179429600 + AluJo SINE Alu 1 292 -20 1919 138 0 7 chr3 38607561 38607863 -179429295 + AluSg SINE Alu 1 300 0 279 0 0 0 chr3 38609777 38609808 -179427350 + (T)n Simple_repeat Simple_repeat 1 31 0 22 0 0 0 chr3 38611171 38611193 -179425965 + AT_rich Low_complexity Low_complexity 1 22 0 2302 87 3 0 chr3 38611609 38611919 -179425239 + AluY SINE Alu 1 311 0 241 246 104 60 chr3 38612867 38613001 -179424157 + MIR SINE MIR 75 214 -48 250 365 70 40 chr3 38613925 38614125 -179423033 - L3b LINE CR1 -84 1499 1294 24 32 0 0 chr3 38614370 38614401 -179422757 + AT_rich Low_complexity Low_complexity 1 31 0 437 352 33 5 chr3 38614585 38614798 -179422360 - MIR SINE MIR -5 257 39 1446 303 83 37 chr3 38615230 38616244 -179420914 + L2 LINE L2 2200 3308 -5 2112 117 3 3 chr3 38616428 38616727 -179420431 - AluSx SINE Alu -13 299 1 2021 139 0 3 chr3 38617493 38617796 -179419362 + AluSx SINE Alu 1 302 -10 455 216 34 0 chr3 38618857 38618945 -179418213 - MER58A DNA MER1_type -15 92 2 604 343 29 27 chr3 38618954 38619330 -179417828 + L1MC4a LINE L1 5533 5909 -1899 405 0 0 0 chr3 38620175 38620220 -179416938 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr3 38620244 38620265 -179416893 + AT_rich Low_complexity Low_complexity 1 21 0 550 230 25 50 chr3 38620271 38620432 -179416726 - MIR SINE MIR -66 196 40 1406 197 47 0 chr3 38621054 38621308 -179415850 - AluJo SINE Alu -23 289 24 22 0 0 0 chr3 38621626 38621648 -179415510 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr3 38621730 38621758 -179415400 + AT_rich Low_complexity Low_complexity 1 28 0 1692 127 70 14 chr3 38621874 38622158 -179415000 - AluSx SINE Alu -6 306 7 1331 195 32 22 chr3 38622219 38622496 -179414662 + AluJo SINE Alu 3 282 -30 194 0 39 0 chr3 38622500 38622526 -179414632 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 26 82 0 0 chr3 38622558 38622619 -179414539 + AT_rich Low_complexity Low_complexity 1 61 0 207 0 0 0 chr3 38623126 38623149 -179414009 + (T)n Simple_repeat Simple_repeat 1 23 0 2185 122 0 0 chr3 38623464 38623759 -179413399 - AluSx SINE Alu -10 302 8 759 113 50 35 chr3 38624380 38624521 -179412637 - MER53 DNA DNA 0 189 47 258 214 43 51 chr3 38624576 38624693 -179412465 + (TATAA)n Simple_repeat Simple_repeat 2 117 0 469 207 33 0 chr3 38624710 38624831 -179412327 - MER53 DNA DNA -57 132 8 494 223 61 14 chr3 38624860 38625008 -179412150 - MLT1J2 LTR MaLR -229 221 67 462 270 50 25 chr3 38627001 38627160 -179409998 + MIR SINE MIR 52 214 -48 811 256 83 45 chr3 38627316 38627629 -179409529 - LTR16A LTR ERVL -6 444 120 264 313 47 0 chr3 38628249 38628399 -179408759 - L1ME LINE L1 -240 5881 5725 205 340 20 65 chr3 38628628 38628781 -179408377 - L2 LINE L2 -184 3088 2943 245 174 0 0 chr3 38629202 38629248 -179407910 - L2 LINE L2 0 3313 3268 2490 66 0 0 chr3 38630388 38630690 -179406468 + AluY SINE Alu 1 302 -9 466 346 47 45 chr3 38630799 38631201 -179405957 + LTR16C LTR ERVL 74 476 -15 288 286 100 0 chr3 38632642 38632712 -179404446 - L2 LINE L2 -1 3312 3236 282 288 159 0 chr3 38632794 38632926 -179404232 + MER5A DNA MER1_type 35 187 -2 * 623 218 32 0 chr3 38632818 38632942 -179404216 - MER5A DNA MER1_type -61 128 1 232 237 178 15 chr3 38633164 38633299 -179403859 + L1ME4a LINE L1 5965 6121 0 1167 92 0 0 chr3 38633455 38633607 -179403551 + AluSg/x SINE Alu 159 310 0 242 71 0 24 chr3 38633798 38633840 -179403318 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr3 38634317 38634338 -179402820 + AT_rich Low_complexity Low_complexity 1 21 0 5525 106 30 35 chr3 38634806 38635491 -179401667 - L1PA13 LINE L1 -3 6160 5474 369 43 0 0 chr3 38635491 38635538 -179401620 + (TTG)n Simple_repeat Simple_repeat 1 47 0 2228 97 0 0 chr3 38635538 38635817 -179401341 - AluSg SINE Alu -31 279 1 5525 106 30 35 chr3 38635817 38636058 -179401100 - L1PA13 LINE L1 -687 5476 5237 577 314 56 53 chr3 38636252 38636555 -179400603 - MER102b DNA MER1_type -31 310 7 204 260 0 0 chr3 38637459 38637509 -179399649 - L2 LINE L2 -1 3312 3263 223 293 0 0 chr3 38637662 38637720 -179399438 - L2 LINE L2 -4 3309 3252 1408 214 69 0 chr3 38637811 38638147 -179399011 + AluJo SINE Alu 3 358 0 2020 117 10 36 chr3 38638261 38638570 -179398588 + AluSq SINE Alu 1 301 -12 181 282 154 9 chr3 38638576 38638686 -179398472 + MIR SINE MIR 110 235 -27 25 31 0 0 chr3 38639999 38640031 -179397127 + AT_rich Low_complexity Low_complexity 1 32 0 247 340 39 31 chr3 38640136 38640431 -179396727 - L2 LINE L2 0 3313 2932 180 0 0 0 chr3 38640701 38640721 -179396437 + (A)n Simple_repeat Simple_repeat 1 20 0 720 260 92 24 chr3 38640728 38640978 -179396180 + L1ME1 LINE L1 5891 6157 -9 216 341 65 7 chr3 38642415 38642553 -179394605 + L3 LINE CR1 1232 1377 -200 308 349 125 31 chr3 38642582 38642774 -179394384 - MIR SINE MIR -39 223 14 363 367 25 13 chr3 38642805 38642963 -179394195 + L3 LINE CR1 1411 1570 -7 463 298 155 0 chr3 38643008 38643169 -179393989 - MER5A DNA MER1_type 0 189 4 22 0 0 0 chr3 38644116 38644138 -179393020 + AT_rich Low_complexity Low_complexity 1 22 0 19982 167 39 9 chr3 38644251 38647184 -179389974 - L1MA2 LINE L1 0 7723 4877 2027 141 13 0 chr3 38647184 38647483 -179389675 - AluSx SINE Alu -9 303 1 19982 167 39 9 chr3 38647483 38648895 -179388263 - L1MA2 LINE L1 -2846 4877 3508 315 0 0 0 chr3 38648895 38648930 -179388228 + (CA)n Simple_repeat Simple_repeat 2 36 0 19982 167 39 9 chr3 38648930 38652063 -179385095 - L1MA2 LINE L1 -4215 3508 23 2880 10 0 0 chr3 38652854 38653167 -179383991 - AluYb8 SINE Alu -5 313 1 275 0 29 0 chr3 38654742 38654777 -179382381 + (TAA)n Simple_repeat Simple_repeat 1 36 0 423 0 0 0 chr3 38656216 38656263 -179380895 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 250 291 23 35 chr3 38657551 38657637 -179379521 - L2 LINE L2 -1 3271 3187 282 298 64 64 chr3 38657651 38657839 -179379319 + L2 LINE L2 1485 1672 -1642 223 298 0 0 chr3 38657847 38657904 -179379254 + L2 LINE L2 3251 3307 -6 182 279 0 0 chr3 38657918 38657961 -179379197 - MER5B DNA MER1_type 0 178 136 1302 284 107 63 chr3 38657995 38659014 -179378144 + L2 LINE L2 1686 2749 -565 277 338 147 0 chr3 38659098 38659234 -179377924 + L2 LINE L2 3117 3272 0 296 252 18 45 chr3 38659519 38659630 -179377528 + MIR SINE MIR 53 160 -102 306 250 0 0 chr3 38660680 38660744 -179376414 - L2 LINE L2 0 3313 3250 189 0 0 0 chr3 38661294 38661315 -179375843 + (T)n Simple_repeat Simple_repeat 1 21 0 270 0 0 0 chr3 38661315 38661345 -179375813 + (TG)n Simple_repeat Simple_repeat 1 30 0 489 250 149 0 chr3 38661992 38662206 -179374952 + L1MD3 LINE L1 6069 7984 -11 274 246 0 0 chr3 38663269 38663334 -179373824 + CT-rich Low_complexity Low_complexity 2 66 0 662 283 126 9 chr3 38664214 38664444 -179372714 + MIR SINE MIR 3 259 -3 21 36 0 0 chr3 38664527 38664555 -179372603 + AT_rich Low_complexity Low_complexity 1 28 0 209 325 26 0 chr3 38664561 38664638 -179372520 - L2 LINE L2 -6 3307 3229 333 320 20 85 chr3 38664915 38665162 -179371996 - MLT1J LTR MaLR -173 338 108 222 37 0 0 chr3 38666254 38666281 -179370877 + (CA)n Simple_repeat Simple_repeat 2 28 0 7025 41 0 9 chr3 38666367 38667238 -179369920 + L1PA5 LINE L1 5286 6148 -6 611 287 69 84 chr3 38667805 38668139 -179369019 - L2 LINE L2 -11 3302 2974 2260 103 0 6 chr3 38669183 38669495 -179367663 + AluSg SINE Alu 1 310 0 411 236 194 18 chr3 38670556 38670721 -179366437 - MIR SINE MIR -49 213 20 215 246 15 31 chr3 38670836 38670901 -179366257 + L2 LINE L2 3250 3313 0 1402 123 22 9 chr3 38673242 38673469 -179363689 + L1MA1 LINE L1 6073 6302 0 1768 212 92 10 chr3 38674278 38674670 -179362488 + MSTB1 LTR MaLR 9 432 0 200 200 46 0 chr3 38675200 38675265 -179361893 + (TA)n Simple_repeat Simple_repeat 2 69 0 311 306 86 92 chr3 38676920 38677256 -179359902 + L2 LINE L2 2975 3308 -5 258 349 121 0 chr3 38677255 38677387 -179359771 - MIR SINE MIR -86 176 29 * 499 218 18 18 chr3 38677503 38677613 -179359545 + MER20 DNA MER1_type 1 110 -109 188 396 44 11 chr3 38677761 38677852 -179359306 - L2 LINE L2 -78 3194 3101 767 202 11 71 chr3 38678011 38678194 -179358964 + MER20 DNA MER1_type 47 218 -1 22 0 0 0 chr3 38681036 38681058 -179356100 + AT_rich Low_complexity Low_complexity 1 22 0 1923 189 17 3 chr3 38681305 38681665 -179355493 - MLT1A1 LTR MaLR 0 365 1 308 168 46 130 chr3 38682029 38682160 -179354998 - L1MC5 LINE L1 -60 7901 7782 31 26 0 0 chr3 38682169 38682207 -179354951 + AT_rich Low_complexity Low_complexity 1 38 0 227 250 0 0 chr3 38682217 38682281 -179354877 - L1MC5 LINE L1 -197 7764 7701 702 187 249 13 chr3 38683073 38683298 -179353860 - MER5C DNA MER1_type -3 321 44 277 301 0 0 chr3 38683708 38683781 -179353377 + L2 LINE L2 3238 3310 -3 543 287 116 6 chr3 38686003 38686167 -179350991 + MIR SINE MIR 3 184 -78 340 343 102 6 chr3 38686334 38686678 -179350480 - L1ME4a LINE L1 -212 5909 5533 346 276 49 0 chr3 38687090 38687192 -179349966 + MER45 DNA AcHobo 1 117 -61 1593 121 25 0 chr3 38687199 38687439 -179349719 - L1M2 LINE L1 -577 5714 5469 240 197 76 30 chr3 38687454 38687520 -179349638 + MER45 DNA AcHobo 1513 1581 0 5714 133 40 6 chr3 38687677 38688624 -179348534 + L1MA8 LINE L1 5259 6237 -54 23 0 0 0 chr3 38688624 38688647 -179348511 + AT_rich Low_complexity Low_complexity 1 23 0 294 311 59 25 chr3 38689062 38689181 -179347977 - MIR3 SINE MIR -37 171 49 236 296 154 47 chr3 38689365 38689534 -179347624 + MIR SINE MIR 34 220 -42 234 0 0 0 chr3 38689537 38689563 -179347595 + (CA)n Simple_repeat Simple_repeat 1 26 0 412 256 0 0 chr3 38689685 38689763 -179347395 + FLAM_C SINE Alu 26 103 -40 421 271 34 62 chr3 38690215 38690273 -179346885 - L1ME1 LINE L1 -5 6161 6103 2166 71 7 3 chr3 38690273 38690578 -179346580 + AluSq SINE Alu 3 308 0 421 271 34 62 chr3 38690578 38690695 -179346463 - L1ME1 LINE L1 -63 6103 5990 663 215 48 16 chr3 38691415 38691601 -179345557 + L1ME3 LINE L1 5880 6071 -91 266 224 104 0 chr3 38691779 38691846 -179345312 + MIR3 SINE MIR 123 196 -12 306 278 130 17 chr3 38691868 38691983 -179345175 - L2 LINE L2 0 3313 3186 1951 127 3 38 chr3 38692279 38692595 -179344563 + AluSq SINE Alu 1 305 -8 1147 84 19 35 chr3 38693160 38693351 -179343807 + L1PA8A LINE L1 5938 6154 -1 184 313 16 0 chr3 38693642 38693706 -179343452 + MIR SINE MIR 86 150 -112 21 0 0 0 chr3 38694220 38694241 -179342917 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr3 38694623 38694658 -179342500 + AT_rich Low_complexity Low_complexity 1 35 0 236 318 94 0 chr3 38696082 38696167 -179340991 + MIR3 SINE MIR 104 196 -12 379 267 92 51 chr3 38696191 38696386 -179340772 - L2 LINE L2 0 3313 3111 667 227 41 72 chr3 38696759 38696906 -179340252 + MIR SINE MIR 9 150 -112 1972 75 50 4 chr3 38696906 38697184 -179339974 + AluY SINE Alu 4 294 -17 667 227 41 72 chr3 38697184 38697230 -179339928 + MIR SINE MIR 150 196 -66 2386 54 7 7 chr3 38697377 38697675 -179339483 + AluY SINE Alu 1 298 -13 1380 169 93 35 chr3 38698955 38699299 -179337859 + THE1B LTR MaLR 1 364 0 1870 134 0 14 chr3 38699479 38699762 -179337396 + AluSq SINE Alu 2 280 -33 366 23 0 0 chr3 38699764 38699807 -179337351 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 254 226 98 59 chr3 38700240 38700342 -179336816 + MIR SINE MIR 62 167 -95 358 277 94 96 chr3 38700814 38701005 -179336153 + MIR SINE MIR 10 220 -42 321 242 44 11 chr3 38701075 38701166 -179335992 + MIR SINE MIR 99 192 -70 205 345 57 68 chr3 38701325 38701403 -179335755 + L2 LINE L2 2915 2992 -280 778 155 170 46 chr3 38701403 38701597 -179335561 - MER20 DNA MER1_type 0 219 2 205 345 57 68 chr3 38701597 38701814 -179335344 + L2 LINE L2 2992 3207 -65 233 280 0 0 chr3 38701842 38701892 -179335266 + polypurine Low_complexity Low_complexity 1 50 0 975 243 93 29 chr3 38702730 38703105 -179334053 - HsTC2 DNA Tc2 -39 1859 1285 440 223 149 8 chr3 38703109 38703230 -179333928 - HsTC2 DNA Tc2 -1757 141 4 379 298 32 32 chr3 38703294 38703418 -179333740 + MIR SINE MIR 17 140 -122 255 200 33 33 chr3 38704515 38704575 -179332583 + L2 LINE L2 3206 3265 -7 377 331 27 27 chr3 38704700 38704848 -179332310 + MER5A DNA MER1_type 42 189 0 181 298 35 18 chr3 38707866 38707923 -179329235 - MIR SINE MIR -135 73 16 1160 237 113 4 chr3 38708553 38708827 -179328331 + LTR16C LTR ERVL 188 491 0 1957 273 43 20 chr3 38709166 38709770 -179327388 + L2 LINE L2 2164 2781 -533 315 0 0 0 chr3 38710105 38710140 -179327018 + (TG)n Simple_repeat Simple_repeat 2 36 0 280 359 0 47 chr3 38713357 38713485 -179323673 + MER5A DNA MER1_type 40 161 -28 285 51 0 0 chr3 38713652 38713691 -179323467 + (GA)n Simple_repeat Simple_repeat 2 40 0 345 24 0 0 chr3 38714322 38714364 -179322794 + (CA)n Simple_repeat Simple_repeat 2 43 0 779 253 16 5 chr3 38714867 38715061 -179322097 + MIR SINE MIR 32 227 -35 658 269 118 38 chr3 38715096 38715621 -179321537 - L1ME4a LINE L1 -28 6093 5527 243 214 24 24 chr3 38716461 38716545 -179320613 + MER113 DNA MER1_type? 127 210 -311 655 262 29 24 chr3 38720130 38720336 -179316822 - MER3 DNA MER1_type 0 209 3 2275 105 0 3 chr3 38721039 38721345 -179315813 - AluSx SINE Alu -7 305 1 207 0 0 0 chr3 38721472 38721495 -179315663 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 26 50 0 0 chr3 38722247 38722287 -179314871 + AT_rich Low_complexity Low_complexity 1 40 0 1969 146 0 16 chr3 38722330 38722639 -179314519 - AluJb SINE Alu -8 304 1 1732 181 0 28 chr3 38724338 38724659 -179312499 - AluJb SINE Alu 0 312 1 24 67 0 0 chr3 38725919 38725964 -179311194 + AT_rich Low_complexity Low_complexity 1 45 0 364 290 48 0 chr3 38727252 38727376 -179309782 + MIR SINE MIR 57 186 -76 186 43 0 0 chr3 38727754 38727777 -179309381 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 263 291 0 23 chr3 38728486 38728572 -179308586 - Charlie8 DNA MER1_type -2195 222 139 468 0 0 0 chr3 38728588 38728640 -179308518 + (TG)n Simple_repeat Simple_repeat 2 53 0 1665 185 10 27 chr3 38728666 38728964 -179308194 - AluSx SINE Alu -19 293 1 229 177 40 153 chr3 38729127 38729251 -179307907 + MIR SINE MIR 103 212 -50 5959 162 66 8 chr3 38729471 38730632 -179306526 + Tigger3b DNA MER2_type 2 1230 -1 615 261 151 7 chr3 38730981 38731253 -179305905 - MLT1J1 LTR MaLR -133 313 3 2840 60 0 0 chr3 38731652 38732002 -179305156 - L1P2 LINE L1 -422 5732 5383 551 73 0 0 chr3 38731999 38732081 -179305077 + L1P LINE L1 4625 4706 -1440 * 220 261 146 39 chr3 38732133 38732263 -179304895 + MIR SINE MIR 118 261 -1 373 185 74 9 chr3 38732352 38732460 -179304698 - MER53 DNA DNA -52 137 23 1269 218 42 18 chr3 38734289 38734573 -179302585 + AluJo SINE Alu 1 291 -21 2221 129 3 0 chr3 38736459 38736768 -179300390 - AluSg SINE Alu 0 310 1 319 233 0 0 chr3 38736936 38737022 -179300136 + (TA)n Simple_repeat Simple_repeat 2 87 0 780 178 0 15 chr3 38737685 38737820 -179299338 + FLAM_C SINE Alu 1 133 0 25 31 0 0 chr3 38738088 38738120 -179299038 + AT_rich Low_complexity Low_complexity 1 32 0 1714 155 79 0 chr3 38738163 38738441 -179298717 + AluJo SINE Alu 1 300 -12 706 95 0 0 chr3 38739945 38740040 -179297118 - AluSg/x SINE Alu -12 300 206 1846 110 0 0 chr3 38740040 38740277 -179296881 - AluSq SINE Alu -76 237 1 24 0 0 0 chr3 38740807 38740831 -179296327 + AT_rich Low_complexity Low_complexity 1 24 0 350 306 76 25 chr3 38741489 38741646 -179295512 + MIR SINE MIR 49 213 -49 476 343 75 8 chr3 38742253 38742492 -179294666 + MIR SINE MIR 4 258 -4 564 264 132 0 chr3 38742545 38742712 -179294446 - MER5A DNA MER1_type 0 189 1 2106 90 17 13 chr3 38743032 38743363 -179293795 - AluSc SINE Alu 0 309 1 4087 181 18 9 chr3 38743453 38744241 -179292917 - L1MB3 LINE L1 -2 6417 5623 570 213 20 0 chr3 38744236 38744386 -179292772 - L1MB3 LINE L1 -1656 4726 4574 * 1148 195 102 8 chr3 38744379 38744840 -179292318 - L1MB3 LINE L1 -3579 2803 2302 * 3526 199 31 20 chr3 38744836 38745548 -179291610 - L1MB3 LINE L1 -5646 738 19 180 362 81 27 chr3 38746609 38746794 -179290364 - MIR SINE MIR -5 257 63 23 54 0 0 chr3 38747084 38747121 -179290037 + AT_rich Low_complexity Low_complexity 1 37 0 206 118 0 0 chr3 38747299 38747333 -179289825 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 23 0 0 0 chr3 38747997 38748020 -179289138 + AT_rich Low_complexity Low_complexity 1 23 0 331 302 35 17 chr3 38748056 38748172 -179288986 + L2 LINE L2 3196 3313 0 2129 118 0 0 chr3 38748454 38748741 -179288417 + AluSc SINE Alu 1 287 -22 1016 295 113 27 chr3 38750162 38750688 -179286470 + L2 LINE L2 2740 3313 0 26 0 0 0 chr3 38751000 38751026 -179286132 + AT_rich Low_complexity Low_complexity 1 26 0 24 53 0 0 chr3 38751275 38751313 -179285845 + AT_rich Low_complexity Low_complexity 1 38 0 796 238 32 11 chr3 38751582 38751767 -179285391 + MER5A DNA MER1_type 1 189 0 474 275 87 5 chr3 38752342 38752549 -179284609 - LTR33A LTR ERVL 0 523 300 284 318 116 0 chr3 38752792 38752921 -179284237 - LTR50 LTR ERVL -629 166 23 881 271 149 15 chr3 38753187 38753582 -179283576 + LTR16A1 LTR ERVL 8 455 -2 246 216 0 95 chr3 38753634 38753708 -179283450 - MIR SINE MIR -117 145 79 543 151 85 0 chr3 38754411 38754517 -179282641 + MLT1C LTR MaLR 1 115 -352 38591 80 10 11 chr3 38754536 38760679 -179276479 + L1PA5 LINE L1 11 6148 -6 393 279 83 49 chr3 38760688 38761096 -179276062 - HAL1b LINE L1 -480 868 447 2521 128 59 2 chr3 38761113 38761518 -179275640 - MSTA LTR MaLR 0 428 1 394 274 34 34 chr3 38762082 38762199 -179274959 + MIR SINE MIR 16 132 -76 384 339 63 42 chr3 38762550 38762789 -179274369 + L3b LINE CR1 1105 1348 -235 782 233 12 12 chr3 38763288 38763460 -179273698 + MER5A DNA MER1_type 18 189 0 182 37 37 0 chr3 38764016 38764043 -179273115 + (TA)n Simple_repeat Simple_repeat 1 28 0 434 258 17 8 chr3 38765105 38765225 -179271933 - L1ME2 LINE L1 -19 6145 6025 5220 97 4 5 chr3 38765583 38766324 -179270834 - L1PA11 LINE L1 0 6174 5435 1795 125 3 35 chr3 38766391 38766701 -179270457 - AluSc SINE Alu 0 301 1 322 226 113 61 chr3 38766722 38766837 -179270321 + MER117 DNA MER1_type 36 156 -41 186 71 0 0 chr3 38767834 38767862 -179269296 + (CA)n Simple_repeat Simple_repeat 2 29 0 378 42 0 0 chr3 38769028 38769076 -179268082 + (CA)n Simple_repeat Simple_repeat 2 49 0 2303 53 0 11 chr3 38769291 38769609 -179267549 - AluY SINE Alu 0 315 1 25 0 0 0 chr3 38770394 38770419 -179266739 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr3 38770485 38770509 -179266649 + AT_rich Low_complexity Low_complexity 1 24 0 480 238 74 64 chr3 38771808 38772010 -179265148 + MIR SINE MIR 47 250 -12 673 243 7 7 chr3 38772395 38772539 -179264619 - LTR16C LTR ERVL -135 356 213 22 0 0 0 chr3 38772576 38772598 -179264560 + AT_rich Low_complexity Low_complexity 1 22 0 1957 176 8 3 chr3 38773186 38773545 -179263613 - MER46B DNA MER2_type 0 236 1 391 297 71 0 chr3 38774515 38774697 -179262461 - L1MC4a LINE L1 -1878 5930 5736 1813 156 17 3 chr3 38774792 38775080 -179262078 - AluSx SINE Alu -17 295 4 199 205 51 0 chr3 38775478 38775517 -179261641 - MER5A DNA MER1_type -70 119 79 211 390 8 8 chr3 38776562 38776680 -179260478 - L2 LINE L2 -467 2847 2730 1952 68 0 0 chr3 38776702 38776938 -179260220 + AluSq SINE Alu 72 307 -6 4412 116 127 103 chr3 38777040 38778564 -179258594 + pTR5 LTR ERV1 743 2438 0 242 363 94 33 chr3 38778679 38778891 -179258267 - MIR SINE MIR -37 225 1 3163 151 25 6 chr3 38779402 38779919 -179257239 + MER1A DNA MER1_type 1 527 0 532 194 194 0 chr3 38780142 38780286 -179256872 + MIR SINE MIR 91 262 0 1198 262 87 18 chr3 38784446 38784847 -179252311 + LTR16A LTR ERVL 21 449 -1 427 313 103 9 chr3 38785971 38786204 -179250954 - MIR SINE MIR 0 262 8 360 264 36 55 chr3 38786559 38786630 -179250528 - L2 LINE L2 0 3313 3243 1608 134 131 3 chr3 38786630 38786928 -179250230 - MER44D DNA MER2_type 0 609 4 360 264 36 55 chr3 38786928 38786966 -179250192 - L2 LINE L2 -70 3243 3206 448 285 44 32 chr3 38787152 38787310 -179249848 - MIR3 SINE MIR -5 203 44 2297 190 20 93 chr3 38787809 38787941 -179249217 + MLT2B2 LTR ERVL 1 141 -374 1817 192 0 0 chr3 38787941 38788248 -179248910 - AluJb SINE Alu -4 308 2 2297 190 20 93 chr3 38788248 38788662 -179248496 + MLT2B2 LTR ERVL 141 507 -8 26 0 0 0 chr3 38788744 38788770 -179248388 + AT_rich Low_complexity Low_complexity 1 26 0 2020 165 0 0 chr3 38789409 38789718 -179247440 + AluJb SINE Alu 1 309 -3 448 205 0 0 chr3 38789730 38789813 -179247345 - L2 LINE L2 -9 3304 3222 * 760 266 142 63 chr3 38789784 38790227 -179246931 - L2 LINE L2 -687 2627 2150 303 93 0 0 chr3 38790375 38790418 -179246740 + (CA)n Simple_repeat Simple_repeat 1 43 0 220 315 148 13 chr3 38790862 38791011 -179246147 - MIR SINE MIR -20 242 74 424 304 99 16 chr3 38791692 38791883 -179245275 + L1MC/D LINE L1 5458 5664 -2144 361 286 32 7 chr3 38792030 38792184 -179244974 - L1ME4a LINE L1 -3 6118 5961 619 306 121 0 chr3 38792679 38792885 -179244273 + MIR SINE MIR 18 248 -14 847 298 94 22 chr3 38793971 38794333 -179242825 - LTR16C LTR ERVL -14 477 90 467 269 228 0 chr3 38794681 38794826 -179242332 - MER5A DNA MER1_type -3 186 9 206 229 200 29 chr3 38794922 38794992 -179242166 + MIR SINE MIR 30 111 -97 857 327 77 46 chr3 38795221 38795835 -179241323 + L2 LINE L2 2313 2945 -369 255 31 0 0 chr3 38796333 38796365 -179240793 + (TG)n Simple_repeat Simple_repeat 1 32 0 403 208 13 13 chr3 38797131 38797233 -179239925 - MER20 DNA MER1_type -115 104 3 2949 244 68 22 chr3 38797849 38798601 -179238557 - L1MC4 LINE L1 -6 8036 7225 2308 103 3 3 chr3 38798601 38798912 -179238246 - AluSq SINE Alu -2 311 1 2949 244 68 22 chr3 38798912 38799161 -179237997 - L1MC4 LINE L1 -817 7225 6989 361 307 52 0 chr3 38799986 38800139 -179237019 - MIR SINE MIR -3 259 99 207 316 62 57 chr3 38800449 38800642 -179236516 + L2 LINE L2 3120 3313 0 15161 96 13 6 chr3 38800955 38803882 -179233276 + L1PA8 LINE L1 3093 6031 -141 372 45 0 0 chr3 38804650 38804694 -179232464 - MLT2C1 LTR ERVL 0 397 354 351 243 0 28 chr3 38804777 38804954 -179232204 + CT-rich Low_complexity Low_complexity 2 173 0 1221 275 84 23 chr3 38804984 38805413 -179231745 - MLT2B1 LTR ERVL -65 455 1 26 0 0 0 chr3 38805621 38805647 -179231511 + AT_rich Low_complexity Low_complexity 1 26 0 1886 143 18 6 chr3 38806210 38806546 -179230612 - L1M2 LINE L1 -594 5706 5367 1541 163 54 33 chr3 38806558 38806889 -179230269 - L1M2 LINE L1 -901 5245 4908 210 37 0 0 chr3 38806905 38806932 -179230226 + (CA)n Simple_repeat Simple_repeat 2 28 0 2914 145 8 14 chr3 38806933 38807438 -179229720 + L1MA5 LINE L1 5795 6296 -4 783 193 114 90 chr3 38807542 38807832 -179229326 + MER5C DNA MER1_type 22 318 -6 337 268 49 41 chr3 38808685 38808808 -179228350 + MIR3 SINE MIR 55 178 -30 23 33 0 0 chr3 38808821 38808851 -179228307 + AT_rich Low_complexity Low_complexity 1 30 0 1129 224 84 41 chr3 38809604 38809876 -179227282 - MER113 DNA MER1_type? -88 433 135 2366 52 10 0 chr3 38809876 38810164 -179226994 - AluY SINE Alu -20 291 1 1129 224 84 41 chr3 38810164 38810306 -179226852 - MER113 DNA MER1_type? -386 135 1 272 285 50 69 chr3 38810311 38810493 -179226665 + MIR SINE MIR 17 188 -74 216 67 0 0 chr3 38810597 38810627 -179226531 + (CAAAAA)n Simple_repeat Simple_repeat 6 35 0 215 194 0 0 chr3 38810684 38810720 -179226438 + (TGG)n Simple_repeat Simple_repeat 1 36 0 366 91 0 0 chr3 38810721 38810776 -179226382 + (TG)n Simple_repeat Simple_repeat 1 55 0 909 168 22 32 chr3 38811530 38811715 -179225443 - MER5A DNA MER1_type -6 183 1 571 301 169 0 chr3 38811728 38811941 -179225217 + MIR SINE MIR 2 250 -12 2571 52 0 10 chr3 38812061 38812371 -179224787 + AluY SINE Alu 1 307 -4 22 0 0 0 chr3 38812864 38812886 -179224272 + AT_rich Low_complexity Low_complexity 1 22 0 2215 109 0 3 chr3 38813649 38813952 -179223206 + AluSg SINE Alu 1 302 -8 2119 168 26 5 chr3 38814559 38814941 -179222217 - MLT1B LTR MaLR 0 390 1 210 365 75 0 chr3 38815172 38815279 -179221879 + L2 LINE L2 2650 2764 -550 484 239 179 0 chr3 38816180 38816314 -179220844 - MER105 DNA DNA -3 201 44 727 211 39 61 chr3 38816314 38816494 -179220664 + MER5A DNA MER1_type 3 178 -11 735 195 5 124 chr3 38816519 38816637 -179220521 - MER5A DNA MER1_type -26 163 53 2238 64 2 2 chr3 38816637 38816932 -179220226 - L1PA4 LINE L1 -3 6152 5858 735 195 5 124 chr3 38816932 38816980 -179220178 - MER5A DNA MER1_type -136 53 1 246 324 86 29 chr3 38817087 38817192 -179219966 + L2 LINE L2 3161 3271 -1 2174 110 0 7 chr3 38817391 38817691 -179219467 + AluSg SINE Alu 1 298 -12 22 0 0 0 chr3 38819740 38819762 -179217396 + AT_rich Low_complexity Low_complexity 1 22 0 232 316 44 35 chr3 38820124 38820238 -179216920 + MIR SINE MIR 15 129 -133 189 0 0 0 chr3 38820241 38820262 -179216896 + (TCTA)n Simple_repeat Simple_repeat 1 21 0 576 65 0 0 chr3 38820264 38820341 -179216817 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 939 140 14 0 chr3 38820473 38820616 -179216542 - MER61D LTR ERV1 0 501 357 273 105 0 0 chr3 38820665 38820703 -179216455 - MER61B LTR ERV1 -286 139 102 * 701 239 6 17 chr3 38820680 38820860 -179216298 - LTR28 LTR ERV1 -842 178 1 255 310 99 78 chr3 38820861 38821206 -179215952 - L2 LINE L2 -124 3189 2838 1999 172 40 12 chr3 38821209 38821633 -179215525 - LTR23 LTR ERV1 0 437 2 9864 169 46 38 chr3 38821634 38823438 -179213720 - LTR23-int LTR ERV1 -6 5699 4409 1524 86 5 0 chr3 38823438 38823648 -179213510 - L1PA13 LINE L1 -4 6159 5949 9864 169 46 38 chr3 38823648 38824478 -179212680 - LTR23-int LTR ERV1 -1296 4409 3587 1728 171 84 47 chr3 38824473 38824615 -179212543 - LTR23-int LTR ERV1 -3442 1681 1546 * 1972 202 124 63 chr3 38824615 38825392 -179211766 - LTR1B LTR ERV1 0 826 3 1728 171 84 47 chr3 38825392 38825700 -179211458 - LTR23-int LTR ERV1 -3577 1546 1214 639 286 103 13 chr3 38825700 38825934 -179211224 - MER34C LTR ERV1 -171 414 160 2060 228 45 51 chr3 38825936 38826565 -179210593 - LTR23-int LTR ERV1 -3695 2636 751 795 261 16 12 chr3 38826599 38826852 -179210306 - LTR23-int LTR ERV1 -4396 727 474 2059 117 17 0 chr3 38826852 38827142 -179210016 - AluSx SINE Alu -17 295 1 730 225 20 81 chr3 38827152 38827509 -179209649 - LTR23-int LTR ERV1 -4643 480 1 2177 122 77 21 chr3 38827509 38827920 -179209238 - LTR23 LTR ERV1 0 467 1 678 310 56 56 chr3 38828313 38828781 -179208377 - LTR33 LTR ERVL -8 513 46 2159 243 70 73 chr3 38829020 38829209 -179207949 - MER21B LTR ERV1 -62 801 613 2432 126 3 8 chr3 38829209 38829575 -179207583 - THE1B LTR MaLR 0 364 1 2159 243 70 73 chr3 38829575 38830189 -179206969 - MER21B LTR ERV1 -250 613 1 545 288 8 0 chr3 38830228 38830360 -179206798 - Charlie8 DNA MER1_type -2263 154 22 728 252 13 13 chr3 38830396 38830555 -179206603 + MER5B DNA MER1_type 1 159 -19 1882 214 70 13 chr3 38830558 38831015 -179206143 - L1MD3 LINE L1 -1 7994 7512 296 306 74 9 chr3 38831195 38831303 -179205855 + MIR SINE MIR 38 152 -56 342 80 0 0 chr3 38833142 38833192 -179203966 + (CA)n Simple_repeat Simple_repeat 2 51 0 605 292 41 0 chr3 38833927 38834098 -179203060 - MER45A DNA AcHobo 0 178 1 282 309 103 29 chr3 38834590 38834765 -179202393 - Tigger8 DNA MER2_type -19 647 460 339 340 104 19 chr3 38834791 38835059 -179202099 - Tigger8 DNA MER2_type -313 353 63 300 266 149 32 chr3 38835310 38835464 -179201694 + MIR SINE MIR 2 173 -89 228 246 70 0 chr3 38835469 38835526 -179201632 - L2 LINE L2 0 3272 3212 524 261 8 0 chr3 38836217 38836347 -179200811 + MER5C DNA MER1_type 1 131 -193 300 238 60 0 chr3 38836363 38836447 -179200711 + MER5C DNA MER1_type 232 320 -4 186 297 22 77 chr3 38836420 38836511 -179200647 + L2 LINE L2 124 209 -3105 * 30 0 0 0 chr3 38837423 38837453 -179199705 + AT_rich Low_complexity Low_complexity 1 30 0 2136 127 73 15 chr3 38838632 38838972 -179198186 - THE1B LTR MaLR 0 364 5 312 263 51 34 chr3 38841677 38841795 -179195363 + LTR16C LTR ERVL 319 438 -53 29 28 0 0 chr3 38842755 38842791 -179194367 + AT_rich Low_complexity Low_complexity 1 36 0 221 331 90 60 chr3 38844197 38844330 -179192828 + L2 LINE L2 3134 3270 -2 1216 234 62 83 chr3 38844343 38844509 -179192649 + MLT1D LTR MaLR 1 169 -336 1983 149 136 5 chr3 38844509 38844884 -179192274 - MSTA LTR MaLR 0 428 5 1216 234 62 83 chr3 38844884 38845233 -179191925 + MLT1D LTR MaLR 169 505 0 1376 179 110 11 chr3 38845350 38845663 -179191495 - MER31A LTR ERV1 0 485 8 22 0 0 0 chr3 38846240 38846262 -179190896 + AT_rich Low_complexity Low_complexity 1 22 0 845 333 35 15 chr3 38846532 38846937 -179190221 + LTR16C LTR ERVL 76 488 -3 1909 200 94 2 chr3 38847462 38847917 -179189241 + Charlie1b DNA MER1_type 11 507 -16 237 98 0 0 chr3 38848126 38848167 -179188991 + (T)n Simple_repeat Simple_repeat 1 41 0 300 91 0 0 chr3 38848756 38848800 -179188358 + (TG)n Simple_repeat Simple_repeat 1 44 0 183 42 0 0 chr3 38848799 38848823 -179188335 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 22 35 0 0 chr3 38849309 38849338 -179187820 + AT_rich Low_complexity Low_complexity 1 29 0 648 0 0 0 chr3 38849697 38849769 -179187389 + (TTTC)n Simple_repeat Simple_repeat 2 73 0 470 145 0 0 chr3 38849771 38849840 -179187318 - AluS SINE Alu -19 293 225 24 32 0 0 chr3 38850024 38850055 -179187103 + AT_rich Low_complexity Low_complexity 1 31 0 23 68 0 0 chr3 38850277 38850321 -179186837 + AT_rich Low_complexity Low_complexity 1 44 0 202 309 62 10 chr3 38850548 38850645 -179186513 + MIR SINE MIR 31 132 -130 476 33 0 0 chr3 38850655 38850715 -179186443 - L1PA4 LINE L1 -87 6068 6009 619 85 0 0 chr3 38850715 38850795 -179186363 + L1PA5 LINE L1 6068 6149 -5 2577 57 3 12 chr3 38851964 38852300 -179184858 - L1PB2 LINE L1 -62 6089 5757 215 211 0 0 chr3 38852395 38852433 -179184725 - MIR SINE MIR -224 38 1 422 19 0 0 chr3 38853059 38853111 -179184047 - L1PA3 LINE L1 -4 6151 6100 10910 30 0 0 chr3 38853111 38854413 -179182745 + L1P LINE L1 3396 4697 -1449 2058 118 0 53 chr3 38854542 38854864 -179182294 - AluSx SINE Alu -7 305 1 22 0 0 0 chr3 38855770 38855792 -179181366 + AT_rich Low_complexity Low_complexity 1 22 0 1046 237 5 9 chr3 38856588 38856812 -179180346 - MER58A DNA MER1_type 0 224 2 21 0 0 0 chr3 38856833 38856854 -179180304 + AT_rich Low_complexity Low_complexity 1 21 0 2009 147 20 0 chr3 38857272 38857602 -179179556 + AluSx SINE Alu 1 336 0 321 338 8 0 chr3 38858060 38858193 -179178965 + L1ME LINE L1 5640 5773 -348 28 0 0 0 chr3 38858279 38858307 -179178851 + AT_rich Low_complexity Low_complexity 1 28 0 470 250 35 9 chr3 38859715 38859831 -179177327 + L2 LINE L2 3192 3310 -3 227 245 47 38 chr3 38863540 38863646 -179173512 - L1MC/D LINE L1 -1914 5894 5788 5409 155 41 1 chr3 38863884 38864834 -179172324 - Tigger3b DNA MER2_type -242 989 2 351 65 0 0 chr3 38864961 38865007 -179172151 + (CA)n Simple_repeat Simple_repeat 1 46 0 214 261 101 0 chr3 38865846 38865915 -179171243 + MIR3 SINE MIR 94 169 -39 197 282 26 0 chr3 38866690 38866729 -179170429 - MIR SINE MIR -133 75 36 235 327 50 0 chr3 38866763 38866864 -179170294 + MIR SINE MIR 87 192 -70 27 0 0 0 chr3 38867419 38867446 -179169712 + AT_rich Low_complexity Low_complexity 1 27 0 458 19 0 0 chr3 38867585 38867637 -179169521 + (A)n Simple_repeat Simple_repeat 1 52 0 500 173 8 90 chr3 38868191 38868324 -179168834 + FLAM_A SINE Alu 2 123 -10 1643 227 80 107 chr3 38870493 38870925 -179166233 - L1ME3A LINE L1 -9 6161 5756 771 246 55 10 chr3 38870925 38871124 -179166034 + MER3 DNA MER1_type 2 209 0 1643 227 80 107 chr3 38871124 38871411 -179165747 - L1ME3A LINE L1 -414 5756 5463 1720 169 35 56 chr3 38871478 38871851 -179165307 + MLT1A1 LTR MaLR 1 365 0 2115 111 14 3 chr3 38872433 38872730 -179164428 - AluSq SINE Alu -12 301 2 2675 90 3 6 chr3 38872775 38873140 -179164018 + THE1B LTR MaLR 1 364 0 242 274 113 75 chr3 38873166 38873352 -179163806 + MIR SINE MIR 53 245 -17 983 226 65 5 chr3 38873900 38874117 -179163041 - MLT1D LTR MaLR 0 505 276 21 0 0 0 chr3 38876234 38876255 -179160903 + AT_rich Low_complexity Low_complexity 1 21 0 259 329 0 0 chr3 38878073 38878158 -179159000 + MIR SINE MIR 133 217 -45 3156 247 48 40 chr3 38878336 38881632 -179155526 + L1M3c LINE L1 11 3052 -3158 298 284 95 17 chr3 38882466 38882582 -179154576 - MIR SINE MIR -17 245 121 596 251 11 49 chr3 38882669 38882852 -179154306 + MIR SINE MIR 66 241 -21 237 159 0 0 chr3 38883296 38883340 -179153818 + (TA)n Simple_repeat Simple_repeat 1 44 0 23 0 0 0 chr3 38883717 38883740 -179153418 + AT_rich Low_complexity Low_complexity 1 23 0 222 91 0 0 chr3 38884968 38885001 -179152157 + (TTTTA)n Simple_repeat Simple_repeat 1 33 0 1138 54 16 1 chr3 38885001 38885182 -179151976 - L1PA4 LINE L1 -24 6131 5941 1095 251 43 10 chr3 38885198 38885497 -179151661 - L1ME1 LINE L1 -150 6016 5708 247 150 17 67 chr3 38885649 38885709 -179151449 + L1PB1 LINE L1 144 200 -6663 13243 170 56 39 chr3 38885709 38891858 -179145300 + L1PB1 LINE L1 634 6867 0 1746 124 0 4 chr3 38892021 38892279 -179144879 - AluSc SINE Alu -52 257 1 839 315 31 31 chr3 38892279 38892822 -179144336 - L1MC4a LINE L1 -1949 5859 5317 29 0 0 0 chr3 38893092 38893121 -179144037 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr3 38893172 38893195 -179143963 + AT_rich Low_complexity Low_complexity 1 23 0 222 37 0 0 chr3 38894873 38894900 -179142258 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 740 213 0 0 chr3 38896269 38896405 -179140753 + MIR SINE MIR 25 160 -102 2055 125 30 3 chr3 38896714 38897017 -179140141 + AluSx SINE Alu 1 311 -1 2161 183 44 2 chr3 38897550 38897959 -179139199 + MSTB LTR MaLR 1 426 0 2437 61 0 0 chr3 38898063 38898358 -179138800 + AluY SINE Alu 1 295 -16 407 270 124 27 chr3 38899184 38899369 -179137789 + L2 LINE L2 3111 3313 0 258 273 0 125 chr3 38899413 38899541 -179137617 + MIR3 SINE MIR 85 196 -12 970 166 11 6 chr3 38899767 38899942 -179137216 - Tigger1 DNA MER2_type -1 2417 2242 431 129 0 14 chr3 38899942 38900012 -179137146 - AluJ/FLAM SINE Alu -239 73 5 2965 118 5 2 chr3 38900017 38900465 -179136693 - Tigger1 DNA MER2_type -670 1748 1300 2171 107 0 7 chr3 38900465 38900764 -179136394 - AluSc SINE Alu -12 297 1 4090 121 22 5 chr3 38900765 38901404 -179135754 - Tigger1 DNA MER2_type -1286 1132 483 1809 186 25 8 chr3 38901648 38902003 -179135155 - Tigger1 DNA MER2_type -1932 486 126 799 186 21 4 chr3 38902003 38902240 -179134918 + GA-rich Low_complexity Low_complexity 1 241 0 234 91 0 0 chr3 38904924 38904957 -179132201 + (CA)n Simple_repeat Simple_repeat 1 33 0 2169 107 0 3 chr3 38905195 38905485 -179131673 - AluSx SINE Alu -9 303 15 663 171 0 8 chr3 38905675 38905786 -179131372 + L1 LINE L1 3713 3823 -2318 1979 181 44 7 chr3 38905786 38906121 -179131037 + L1MA9 LINE L1 5883 6240 -72 189 0 0 0 chr3 38906121 38906142 -179131016 + (TA)n Simple_repeat Simple_repeat 2 22 0 1979 181 44 7 chr3 38906142 38906213 -179130945 + L1MA9 LINE L1 6240 6307 -5 454 79 26 0 chr3 38906971 38907047 -179130111 + (TA)n Simple_repeat Simple_repeat 2 79 0 1421 201 10 41 chr3 38907390 38907704 -179129454 + AluJb SINE Alu 6 309 -3 38 68 0 0 chr3 38908925 38908998 -179128160 + AT_rich Low_complexity Low_complexity 1 73 0 1597 213 50 39 chr3 38909498 38910015 -179127143 - Charlie1b DNA MER1_type 0 523 1 330 286 76 43 chr3 38910033 38910565 -179126593 - L1ME LINE L1 -299 5822 5268 182 133 0 0 chr3 38910942 38910972 -179126186 + L2 LINE L2 3284 3313 0 214 100 0 0 chr3 38911809 38911839 -179125319 + L2 LINE L2 3243 3272 0 1850 215 130 0 chr3 38911923 38912369 -179124789 + MLT1D LTR MaLR 2 505 0 1702 169 20 10 chr3 38913012 38913308 -179123850 + AluSx SINE Alu 1 299 -13 272 25 50 0 chr3 38913568 38913608 -179123550 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 235 339 47 8 chr3 38914020 38914147 -179123011 + MIR SINE MIR 70 201 -61 313 311 91 63 chr3 38914148 38914434 -179122724 - MLT1I LTR MaLR 0 409 116 234 236 18 0 chr3 38914499 38914554 -179122604 + MIR SINE MIR 198 253 -9 235 280 329 0 chr3 38914610 38914753 -179122405 + MIR SINE MIR 66 255 -7 776 319 149 42 chr3 38914933 38915841 -179121317 - L2 LINE L2 -2 3311 2309 2359 51 0 3 chr3 38916985 38917277 -179119881 - AluY SINE Alu -2 309 19 359 282 58 32 chr3 38917891 38918047 -179119111 + L1MC5 LINE L1 7754 7913 -48 24 0 0 0 chr3 38918055 38918079 -179119079 + AT_rich Low_complexity Low_complexity 1 24 0 351 0 0 0 chr3 38918510 38918549 -179118609 + (TG)n Simple_repeat Simple_repeat 2 40 0 2186 119 0 10 chr3 38918577 38918880 -179118278 + AluSg SINE Alu 5 304 -6 209 357 164 7 chr3 38920206 38920346 -179116812 + L2 LINE L2 2816 2977 -337 514 323 129 0 chr3 38920384 38920632 -179116526 + L2 LINE L2 3034 3313 0 318 293 108 45 chr3 38920724 38920946 -179116212 + MIR SINE MIR 26 261 -1 6120 100 10 6 chr3 38921150 38922668 -179114490 + L1PA13 LINE L1 4621 6161 -2 204 40 0 0 chr3 38922759 38922784 -179114374 + (T)n Simple_repeat Simple_repeat 1 25 0 2672 58 0 0 chr3 38922784 38923110 -179114048 - LTR17 LTR ERV1 -454 326 1 210 204 23 0 chr3 38924446 38924490 -179112668 - L2 LINE L2 -1 3312 3268 288 345 29 43 chr3 38925414 38925553 -179111605 + L2 LINE L2 3173 3309 -4 26 30 0 0 chr3 38925588 38925621 -179111537 + AT_rich Low_complexity Low_complexity 1 33 0 180 0 0 0 chr3 38926706 38926726 -179110432 + (CCCCCA)n Simple_repeat Simple_repeat 6 25 0 365 98 0 66 chr3 38927085 38927146 -179110012 - 5S rRNA rRNA -64 57 1 240 226 0 0 chr3 38929193 38929255 -179107903 + (CA)n Simple_repeat Simple_repeat 2 63 0 1746 78 25 0 chr3 38930203 38930445 -179106713 - AluY SINE Alu -5 306 59 589 209 139 47 chr3 38931501 38931673 -179105485 - MER5A DNA MER1_type 0 189 2 208 139 0 28 chr3 38931717 38931753 -179105405 + (CA)n Simple_repeat Simple_repeat 1 35 0 1105 139 0 37 chr3 38932032 38932219 -179104939 + AluSg/x SINE Alu 129 308 -2 1629 28 0 51 chr3 38932514 38932731 -179104427 + L1PA5 LINE L1 5949 6154 0 24 53 0 0 chr3 38933261 38933299 -179103859 + AT_rich Low_complexity Low_complexity 1 38 0 331 259 12 0 chr3 38934068 38934153 -179103005 - MIR SINE MIR -77 185 100 332 133 22 44 chr3 38934162 38934252 -179102906 + GA-rich Low_complexity Low_complexity 2 89 0 211 313 30 20 chr3 38934255 38934288 -179102870 - MIR SINE MIR -128 134 103 964 101 0 43 chr3 38934288 38934476 -179102682 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 211 313 30 20 chr3 38934476 38934541 -179102617 - MIR SINE MIR -159 103 35 504 285 64 12 chr3 38935216 38935388 -179101770 + MIR SINE MIR 48 228 -34 198 0 0 0 chr3 38935418 38935440 -179101718 + (A)n Simple_repeat Simple_repeat 1 22 0 591 234 19 5 chr3 38935491 38935652 -179101506 + L1MA10 LINE L1 6017 6334 0 415 208 115 118 chr3 38936818 38937106 -179100052 - MLT1H LTR MaLR -196 353 67 267 323 0 0 chr3 38938740 38938833 -179098325 + (TA)n Simple_repeat Simple_repeat 1 93 0 21 0 0 0 chr3 38940448 38940469 -179096689 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr3 38940722 38940746 -179096412 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 340 94 19 0 chr3 38941491 38941544 -179095614 - Charlie1 DNA MER1_type -1 2760 2707 687 279 23 30 chr3 38941558 38941820 -179095338 - Charlie1 DNA MER1_type -159 2602 2343 248 358 45 0 chr3 38941819 38941886 -179095272 - Charlie1 DNA MER1_type -2691 70 1 * 6349 183 12 5 chr3 38942101 38943290 -179093868 - L1P LINE L1 -1161 4985 3789 501 230 29 35 chr3 38944763 38944937 -179092221 - MER104 DNA Tc2 -7 173 1 250 259 0 0 chr3 38945799 38945857 -179091301 - L2 LINE L2 0 3313 3256 271 337 110 12 chr3 38946471 38946726 -179090432 - L2 LINE L2 -1030 2284 2005 1885 157 3 32 chr3 38947292 38947637 -179089521 - MER1B DNA MER1_type -2 335 1 1558 160 34 22 chr3 38948115 38948383 -179088775 + AluJo SINE Alu 17 287 -25 27 62 0 0 chr3 38948681 38948729 -179088429 + AT_rich Low_complexity Low_complexity 1 48 0 887 254 42 5 chr3 38950702 38950919 -179086239 - MIR SINE MIR -36 226 2 581 242 13 19 chr3 38952223 38952380 -179084778 - L1MD2 LINE L1 -13 6346 6191 703 235 30 18 chr3 38952622 38952788 -179084370 + MIR SINE MIR 40 207 -55 443 99 0 14 chr3 38953762 38953833 -179083325 + (TC)n Simple_repeat Simple_repeat 1 70 0 228 321 98 27 chr3 38954965 38955077 -179082081 - L2 LINE L2 -2 3270 3151 220 289 35 18 chr3 38955553 38955667 -179081491 + (CATATA)n Simple_repeat Simple_repeat 4 119 0 * 341 256 17 17 chr3 38955582 38955699 -179081459 + (TATG)n Simple_repeat Simple_repeat 3 119 0 283 202 81 81 chr3 38955718 38955817 -179081341 - L2 LINE L2 -40 3273 3175 327 337 82 5 chr3 38955893 38956089 -179081069 - L1MC4 LINE L1 -143 7899 7689 186 253 127 0 chr3 38956132 38956211 -179080947 - MIR SINE MIR -57 205 117 21 0 0 0 chr3 38956554 38956575 -179080583 + AT_rich Low_complexity Low_complexity 1 21 0 233 255 0 0 chr3 38956816 38956863 -179080295 - L2 LINE L2 -56 3216 3170 2139 131 24 29 chr3 38957132 38957506 -179079652 + THE1C LTR MaLR 1 372 -3 186 118 0 0 chr3 38958144 38958178 -179078980 + (TTATA)n Simple_repeat Simple_repeat 2 35 0 192 372 0 21 chr3 38958975 38959069 -179078089 + L2 LINE L2 2869 2960 -312 543 304 77 22 chr3 38959256 38959437 -179077721 + MIR SINE MIR 1 191 -71 21 57 0 0 chr3 38960718 38960753 -179076405 + AT_rich Low_complexity Low_complexity 1 35 0 1086 193 18 14 chr3 38962193 38962411 -179074747 - MER20 DNA MER1_type 0 219 1 411 78 0 0 chr3 38962658 38962722 -179074436 + (TATG)n Simple_repeat Simple_repeat 2 65 0 384 230 143 24 chr3 38963771 38963897 -179073261 - L2 LINE L2 0 3313 3173 521 228 74 37 chr3 38963900 38964062 -179073096 - MLT1A2 LTR MaLR 0 390 223 1318 174 19 0 chr3 38964068 38964303 -179072855 - AluJb SINE Alu 0 308 70 812 248 26 22 chr3 38964319 38964545 -179072613 - MLT1A2 LTR MaLR -147 227 1 23 0 0 0 chr3 38964545 38964568 -179072590 + AT_rich Low_complexity Low_complexity 1 23 0 395 325 87 33 chr3 38964573 38964965 -179072193 - L2 LINE L2 -167 3146 2729 346 205 50 56 chr3 38965113 38965137 -179072021 - L1MA10 LINE L1 -1 6333 6310 2233 238 79 2 chr3 38965137 38965756 -179071402 - L1ME2 LINE L1 -13 6151 5485 312 27 0 0 chr3 38968586 38968623 -179068535 + (TG)n Simple_repeat Simple_repeat 2 38 0 213 159 0 0 chr3 38969817 38969861 -179067297 + GA-rich Low_complexity Low_complexity 2 45 0 263 232 195 0 chr3 38970508 38970590 -179066568 + MIR SINE MIR 109 206 -56 203 175 25 0 chr3 38971468 38971508 -179065650 + (TG)n Simple_repeat Simple_repeat 2 42 0 473 250 97 0 chr3 38971982 38972158 -179065000 + MIR SINE MIR 70 262 0 379 294 113 72 chr3 38974759 38974906 -179062252 - L1ME2 LINE L1 -860 5286 5146 1041 219 18 5 chr3 38974906 38975125 -179062033 - MER58A DNA MER1_type 0 224 3 379 294 113 72 chr3 38975125 38975510 -179061648 - L1ME2 LINE L1 -1000 5146 4778 1265 143 65 0 chr3 38975510 38975726 -179061432 + MER30 DNA MER1_type 1 230 0 379 294 113 72 chr3 38975726 38976054 -179061104 - L1ME2 LINE L1 -1368 4778 4390 1135 243 62 14 chr3 38976055 38976367 -179060791 - MSTD LTR MaLR 0 396 101 25 0 0 0 chr3 38976418 38976443 -179060715 + AT_rich Low_complexity Low_complexity 1 25 0 25 75 0 0 chr3 38976462 38976515 -179060643 + AT_rich Low_complexity Low_complexity 1 53 0 248 281 148 31 chr3 38976839 38976967 -179060191 - L1MC4 LINE L1 -315 7727 7585 383 305 109 55 chr3 38977287 38977635 -179059523 - L1ME2 LINE L1 -2191 3955 3589 1694 191 0 10 chr3 38977819 38978123 -179059035 + AluJo SINE Alu 1 301 -11 197 326 54 33 chr3 38978585 38978677 -179058481 - L2 LINE L2 -12 3301 3208 235 189 0 19 chr3 38980581 38980634 -179056524 - LTR66 LTR ERVL -155 455 404 185 310 8 101 chr3 38980964 38981093 -179056065 - L2 LINE L2 -213 3059 2943 424 295 51 51 chr3 38981611 38981828 -179055330 + MARNA DNA Mariner 22 238 -348 400 184 9 18 chr3 38981864 38981978 -179055180 + (TGGA)n Simple_repeat Simple_repeat 3 115 0 475 278 72 28 chr3 38986939 38987119 -179050039 - L2 LINE L2 -4 3309 3122 364 328 22 45 chr3 38987267 38987401 -179049757 - L2 LINE L2 -5 3267 3137 358 215 38 0 chr3 38987899 38987978 -179049180 - MIR SINE MIR -68 140 59 1112 107 0 0 chr3 38990573 38990723 -179046435 + AluY SINE Alu 1 150 -161 2094 104 0 7 chr3 38990955 38991242 -179045916 - AluSq SINE Alu -26 287 3 2844 13 0 0 chr3 38992085 38992401 -179044757 + AluYb8 SINE Alu 1 316 -2 204 125 0 0 chr3 38994248 38994280 -179042878 + (T)n Simple_repeat Simple_repeat 1 32 0 2290 96 10 0 chr3 38994436 38994739 -179042419 + AluSp SINE Alu 2 307 -6 231 270 146 0 chr3 38995619 38995708 -179041450 - MER5A DNA MER1_type -84 105 4 23 0 0 0 chr3 38998054 38998077 -179039081 + AT_rich Low_complexity Low_complexity 1 23 0 231 173 0 0 chr3 38998077 38998129 -179039029 - L1MC4 LINE L1 -1339 6703 6652 24 53 0 0 chr3 38998182 38998220 -179038938 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr3 38999454 38999483 -179037675 + AT_rich Low_complexity Low_complexity 1 29 0 2572 45 0 3 chr3 38999982 39000292 -179036866 - AluY SINE Alu -2 309 1 818 199 141 21 chr3 39000379 39000570 -179036588 - MER20 DNA MER1_type 0 219 6 26 30 0 0 chr3 39000597 39000630 -179036528 + AT_rich Low_complexity Low_complexity 1 33 0 254 320 41 74 chr3 39000869 39000991 -179036167 - L2 LINE L2 -2 3270 3153 243 0 0 0 chr3 39001512 39001539 -179035619 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 475 191 12 0 chr3 39002294 39002378 -179034780 - MER5A DNA MER1_type -6 183 99 21 0 0 0 chr3 39005273 39005294 -179031864 + AT_rich Low_complexity Low_complexity 1 21 0 226 347 80 34 chr3 39006983 39007159 -179029999 + MIR3 SINE MIR 19 202 -6 506 287 72 26 chr3 39008664 39008859 -179028299 + MIR SINE MIR 47 250 -12 395 286 42 30 chr3 39009039 39009207 -179027951 - Charlie8 DNA MER1_type -4 2413 2244 478 266 20 79 chr3 39009268 39009471 -179027687 - Charlie8 DNA MER1_type -2141 276 86 712 334 66 60 chr3 39009522 39010250 -179026908 + L2 LINE L2 2063 2794 -520 437 322 95 33 chr3 39011573 39012107 -179025051 + L1ME4a LINE L1 5291 5884 -237 1363 222 9 19 chr3 39012116 39012431 -179024727 + AluJo SINE Alu 1 312 0 289 264 85 16 chr3 39012492 39012621 -179024537 + L1ME4a LINE L1 5970 6107 -14 337 188 0 31 chr3 39014578 39014642 -179022516 + L2 LINE L2 3207 3268 -4 25 51 0 0 chr3 39014926 39014965 -179022193 + AT_rich Low_complexity Low_complexity 1 39 0 303 248 50 69 chr3 39016302 39016403 -179020755 - L2 LINE L2 -1 3271 3173 1342 118 0 47 chr3 39016672 39016951 -179020207 + L1PA4 LINE L1 5887 6152 -3 6844 65 10 3 chr3 39016966 39018084 -179019074 + L1PA7 LINE L1 5017 6154 0 242 35 35 69 chr3 39018796 39018854 -179018304 + (TTTTA)n Simple_repeat Simple_repeat 3 58 0 22 0 0 0 chr3 39020270 39020292 -179016866 + AT_rich Low_complexity Low_complexity 1 22 0 185 171 0 0 chr3 39021114 39021149 -179016009 - L2 LINE L2 -1 3312 3278 21 36 0 0 chr3 39021850 39021878 -179015280 + AT_rich Low_complexity Low_complexity 1 28 0 1173 235 0 0 chr3 39022271 39022488 -179014670 - MER58A DNA MER1_type -7 217 1 40 21 0 0 chr3 39022736 39022783 -179014375 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr3 39024416 39024438 -179012720 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr3 39024827 39024855 -179012303 + AT_rich Low_complexity Low_complexity 1 28 0 1124 289 43 20 chr3 39025998 39026465 -179010693 - MER90 LTR ERV1 -7 607 94 281 250 0 62 chr3 39026642 39026722 -179010436 - MIR SINE MIR -13 249 175 196 349 57 53 chr3 39027173 39027437 -179009721 + L2 LINE L2 2139 2403 -911 500 330 124 56 chr3 39029699 39030370 -179006788 + L2 LINE L2 2584 3272 0 22 0 0 0 chr3 39030881 39030903 -179006255 + AT_rich Low_complexity Low_complexity 1 22 0 203 272 216 56 chr3 39032092 39032254 -179004904 + MIR SINE MIR 8 195 -67 697 170 15 102 chr3 39032337 39032543 -179004615 + MER5A DNA MER1_type 1 188 -1 2398 123 27 0 chr3 39032618 39032983 -179004175 - THE1C LTR MaLR 0 375 1 10565 113 31 3 chr3 39032983 39034520 -179002638 - THE1C-int LTR MaLR 0 1580 1 2512 123 11 11 chr3 39034520 39034895 -179002263 - THE1C LTR MaLR 0 375 1 477 95 82 0 chr3 39034981 39035128 -179002030 + (TA)n Simple_repeat Simple_repeat 1 159 0 693 209 25 18 chr3 39036247 39036410 -179000748 + MER5B DNA MER1_type 8 171 -7 1894 160 3 3 chr3 39036568 39036868 -179000290 + AluSx SINE Alu 1 300 -12 9306 176 14 49 chr3 39037747 39040497 -178996661 - L1PB1 LINE L1 -1 6866 4256 1741 107 0 4 chr3 39040497 39040731 -178996427 - AluSc SINE Alu -76 233 1 9306 176 14 49 chr3 39040731 39041295 -178995863 - L1PB1 LINE L1 -2611 4256 3674 268 242 33 52 chr3 39041296 39041449 -178995709 - L1PB1 LINE L1 -6105 758 609 1267 285 47 15 chr3 39041476 39042005 -178995153 - L1PB1 LINE L1 -6312 551 6 198 0 0 0 chr3 39044504 39044526 -178992632 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 234 91 0 0 chr3 39044763 39044796 -178992362 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1354 325 117 24 chr3 39046783 39047542 -178989616 + L2 LINE L2 713 1542 -1772 826 240 77 40 chr3 39047564 39047914 -178989244 - L1ME3A LINE L1 0 6170 5808 33 43 0 0 chr3 39047914 39047961 -178989197 + AT_rich Low_complexity Low_complexity 1 47 0 193 194 50 0 chr3 39047965 39048125 -178989033 + (TA)n Simple_repeat Simple_repeat 1 168 0 24 0 0 0 chr3 39048136 39048160 -178988998 + AT_rich Low_complexity Low_complexity 1 24 0 221 158 58 0 chr3 39048166 39048286 -178988872 + (TA)n Simple_repeat Simple_repeat 1 127 0 1195 264 50 10 chr3 39048295 39048678 -178988480 - L1ME3A LINE L1 -399 5771 5374 356 161 65 21 chr3 39048721 39048814 -178988344 - L1MD1 LINE L1 0 6242 6146 995 251 79 30 chr3 39048814 39049284 -178987874 - L1ME3A LINE L1 -1342 4804 4312 21 0 0 0 chr3 39050444 39050465 -178986693 + AT_rich Low_complexity Low_complexity 1 21 0 1630 150 38 24 chr3 39051988 39052281 -178984877 + AluJo SINE Alu 1 297 -15 246 62 0 0 chr3 39052294 39052326 -178984832 + (CAA)n Simple_repeat Simple_repeat 2 33 0 31284 111 19 51 chr3 39052596 39058949 -178978209 - L1PA7 LINE L1 -11 6143 1 1894 168 0 16 chr3 39059796 39060112 -178977046 + AluSx SINE Alu 1 311 -1 365 255 113 9 chr3 39060865 39060971 -178976187 - L2 LINE L2 -2 3311 3195 395 214 0 0 chr3 39061706 39061776 -178975382 + MER5A DNA MER1_type 4 73 -116 603 182 0 66 chr3 39061777 39061898 -178975260 + FLAM_A SINE Alu 1 113 -29 298 276 229 0 chr3 39061933 39062038 -178975120 + MER5A DNA MER1_type 61 189 0 704 237 29 0 chr3 39062046 39062219 -178974939 - MER5B DNA MER1_type 0 178 1 210 37 0 0 chr3 39063754 39063781 -178973377 + (A)n Simple_repeat Simple_repeat 1 27 0 833 259 156 24 chr3 39064572 39064943 -178972215 - MLT1H LTR MaLR 0 549 130 202 250 40 66 chr3 39065070 39065146 -178972012 + MIR SINE MIR 117 190 -72 1270 198 116 74 chr3 39065491 39065602 -178971556 - MER31B LTR ERV1 0 485 380 2289 48 0 52 chr3 39065602 39065911 -178971247 + AluY SINE Alu 1 293 -18 1270 198 116 74 chr3 39065911 39066290 -178970868 - MER31B LTR ERV1 -105 380 1 1520 229 22 102 chr3 39066710 39067209 -178969949 + MLT2B1 LTR ERVL 2 460 -60 30536 37 22 2 chr3 39067215 39073145 -178964013 + L1PA4 LINE L1 1 6074 -81 299 312 98 34 chr3 39124030 39124235 -178912923 + MLT1J2 LTR MaLR 2 219 -231 433 241 86 52 chr3 39125089 39125318 -178911840 + L1MCa LINE L1 17 564 -5858 860 207 79 20 chr3 39125336 39125539 -178911619 + LTR32 LTR ERVL 15 229 -242 387 335 53 16 chr3 39126423 39126611 -178910547 + MIR SINE MIR 65 259 -3 186 43 0 0 chr3 39127250 39127273 -178909885 + (CA)n Simple_repeat Simple_repeat 2 24 0 440 333 42 0 chr3 39127704 39127824 -178909334 - MER91A DNA MER1_type -71 125 1 366 276 71 67 chr3 39129054 39129308 -178907850 - L1ME3A LINE L1 -1 6169 5915 1362 165 37 0 chr3 39129558 39129814 -178907344 - AluJb SINE Alu 0 321 58 1941 153 3 3 chr3 39130345 39130640 -178906518 + AluSx SINE Alu 1 295 -17 207 0 0 0 chr3 39130640 39130663 -178906495 + (TA)n Simple_repeat Simple_repeat 1 23 0 45 0 0 0 chr3 39130663 39130708 -178906450 + AT_rich Low_complexity Low_complexity 1 45 0 323 255 0 43 chr3 39130718 39130812 -178906346 - L1MC4 LINE L1 -1339 6703 6614 198 236 0 0 chr3 39130813 39130868 -178906290 + (TA)n Simple_repeat Simple_repeat 1 55 0 272 291 24 31 chr3 39131011 39131138 -178906020 - L1MCc LINE L1 -6019 404 279 410 280 66 45 chr3 39131408 39131694 -178905464 + L1ME LINE L1 4288 4579 -1567 2280 69 0 29 chr3 39132002 39132308 -178904850 + AluY SINE Alu 1 297 -14 24 0 0 0 chr3 39132528 39132552 -178904606 + AT_rich Low_complexity Low_complexity 1 24 0 631 293 186 17 chr3 39132752 39133107 -178904051 + L1ME LINE L1 5389 5803 -318 385 328 75 36 chr3 39133112 39133420 -178903738 - MER102b DNA MER1_type 0 341 22 289 323 40 40 chr3 39133553 39133652 -178903506 + L2 LINE L2 3171 3269 -3 431 275 5 76 chr3 39133793 39134004 -178903154 - L2 LINE L2 0 3313 3118 1834 283 21 8 chr3 39134016 39134549 -178902609 - MER74B LTR ERVL -10 612 73 824 261 8 69 chr3 39134562 39134940 -178902218 - L2 LINE L2 -190 3123 2770 612 313 65 53 chr3 39134979 39135493 -178901665 + L1M4 LINE L1 3791 4310 -1836 484 310 73 57 chr3 39135612 39135980 -178901178 + L1M4 LINE L1 4525 4898 -1248 1602 174 43 46 chr3 39135985 39136358 -178900800 - THE1C LTR MaLR -3 372 1 367 311 81 48 chr3 39136365 39136574 -178900584 + L1M4 LINE L1 4918 5133 -1013 1788 201 37 3 chr3 39137033 39137381 -178899777 + MLT1A1 LTR MaLR 6 365 0 2028 42 118 4 chr3 39137414 39137676 -178899482 + AluY SINE Alu 1 292 -19 180 0 0 0 chr3 39138368 39138388 -178898770 + (TA)n Simple_repeat Simple_repeat 2 21 0 21 71 0 0 chr3 39140139 39140181 -178896977 + AT_rich Low_complexity Low_complexity 1 42 0 240 159 45 0 chr3 39142190 39142254 -178894904 + AluYb8 SINE Alu 242 307 0 25 0 0 0 chr3 39144386 39144411 -178892747 + AT_rich Low_complexity Low_complexity 1 25 0 577 225 42 28 chr3 39145491 39145633 -178891525 + MIR SINE MIR 118 261 -1 211 242 41 0 chr3 39146220 39146282 -178890876 - MIR SINE MIR -67 141 88 234 0 0 0 chr3 39147320 39147346 -178889812 + (CAAT)n Simple_repeat Simple_repeat 3 28 0 1830 127 0 57 chr3 39147520 39147851 -178889307 + L1PB1 LINE L1 5801 6112 -39 256 241 217 6 chr3 39148398 39148564 -178888594 - Charlie4 DNA MER1_type -3 1958 1758 825 223 41 0 chr3 39148582 39148779 -178888379 - Charlie4 DNA MER1_type -1723 238 34 309 318 44 61 chr3 39148856 39149286 -178887872 - L2 LINE L2 -195 3077 2655 261 234 76 94 chr3 39149376 39149547 -178887611 + MLT1H LTR MaLR 1 168 -381 322 373 77 26 chr3 39149846 39150380 -178886778 - L2 LINE L2 -773 2541 1981 28 48 0 0 chr3 39151386 39151428 -178885730 + AT_rich Low_complexity Low_complexity 1 42 0 826 211 164 14 chr3 39151428 39151708 -178885450 - MER5C DNA MER1_type -1 323 2 2358 100 0 0 chr3 39151724 39152035 -178885123 - AluY SINE Alu 0 311 1 895 264 98 14 chr3 39152900 39153371 -178883787 - MLT1G LTR MaLR -12 578 1 333 167 154 26 chr3 39153372 39153450 -178883708 + MER39 LTR ERV1 48 135 -572 * 1893 200 28 48 chr3 39153423 39153473 -178883685 + MER39 LTR ERV1 257 306 -401 2158 131 13 46 chr3 39153473 39153861 -178883297 + THE1C LTR MaLR 1 375 0 1893 200 28 48 chr3 39153861 39154270 -178882888 + MER39 LTR ERV1 306 707 0 294 297 230 7 chr3 39155490 39155638 -178881520 - MER5A DNA MER1_type 0 189 9 370 308 21 35 chr3 39156504 39156647 -178880511 + MIR SINE MIR 49 189 -73 281 178 0 0 chr3 39157074 39157119 -178880039 - 5S rRNA rRNA -76 45 1 347 302 0 0 chr3 39157151 39157237 -178879921 + L2 LINE L2 3228 3313 0 217 355 19 28 chr3 39157309 39157416 -178879742 - MER5B DNA MER1_type -72 106 1 4131 139 28 12 chr3 39157589 39158330 -178878828 - L1MA4 LINE L1 -2 6298 5546 276 240 50 60 chr3 39159466 39159566 -178877592 - MER102b DNA MER1_type -11 330 232 243 125 0 0 chr3 39159676 39159716 -178877442 + (TTA)n Simple_repeat Simple_repeat 3 42 0 297 326 30 0 chr3 39160015 39160147 -178877011 - HAL1b LINE L1 -743 605 470 559 185 11 0 chr3 39160243 39160335 -178876823 + AluJ/FLAM SINE Alu 7 99 -213 324 70 0 0 chr3 39160454 39160497 -178876661 + (GAAA)n Simple_repeat Simple_repeat 4 46 0 1943 148 10 3 chr3 39160833 39161137 -178876021 - AluSx SINE Alu -6 306 1 213 211 184 70 chr3 39161904 39162018 -178875140 + MIR3 SINE MIR 1 127 -81 2267 93 0 0 chr3 39162326 39162615 -178874543 - AluY SINE Alu -12 299 11 5941 93 30 67 chr3 39162627 39163639 -178873519 - L1PA10 LINE L1 0 6168 5223 2120 134 0 0 chr3 39163639 39163938 -178873220 + AluSx SINE Alu 1 299 -13 5941 93 30 67 chr3 39163938 39164722 -178872436 - L1PA10 LINE L1 -945 5223 4412 9823 155 16 3 chr3 39164724 39166450 -178870708 + L1PA10 LINE L1 2695 4442 -1704 21 0 0 0 chr3 39166703 39166724 -178870434 + AT_rich Low_complexity Low_complexity 1 21 0 642 274 151 26 chr3 39169163 39169620 -178867538 - HAL1 LINE L1 -3 2504 1991 250 202 218 8 chr3 39169755 39169879 -178867279 + L1ME3A LINE L1 5259 5408 -756 477 288 59 0 chr3 39170069 39170239 -178866919 + L1ME3A LINE L1 5681 5860 -310 1394 192 11 49 chr3 39172904 39173253 -178863905 - MLT1B LTR MaLR -21 369 34 35126 47 4 45 chr3 39173257 39173921 -178863237 + L1P LINE L1 3 693 -5453 627 221 7 7 chr3 39173921 39174061 -178863097 - MLT1B LTR MaLR -21 369 230 35126 47 4 45 chr3 39174061 39178248 -178858910 + L1P LINE L1 693 4789 -1357 7414 31 0 0 chr3 39178348 39179228 -178857930 + L1PA4 LINE L1 5276 6155 0 519 72 91 6 chr3 39179459 39179798 -178857360 + (TA)n Simple_repeat Simple_repeat 1 367 0 33 25 0 0 chr3 39179905 39179945 -178857213 + AT_rich Low_complexity Low_complexity 1 40 0 336 296 32 0 chr3 39180226 39180351 -178856807 - L2 LINE L2 -258 3055 2927 223 277 62 36 chr3 39180505 39180617 -178856541 - L2 LINE L2 -182 3090 2976 1888 149 35 51 chr3 39180716 39181086 -178856072 - THE1B LTR MaLR 0 364 1 11626 100 3 1 chr3 39181086 39182662 -178854496 - THE1B-int LTR MaLR 0 1580 1 2079 113 38 57 chr3 39182662 39183033 -178854125 - THE1B LTR MaLR 0 364 1 870 179 68 133 chr3 39184335 39184734 -178852424 - MLT1A2 LTR MaLR 0 426 1 5921 99 4 21 chr3 39186635 39186744 -178850414 + L1PA14 LINE L1 5223 5332 -829 2238 99 3 0 chr3 39186744 39187038 -178850120 + AluY SINE Alu 1 295 -16 5921 99 4 21 chr3 39187038 39187880 -178849278 + L1PA14 LINE L1 5332 6159 -2 249 119 0 0 chr3 39190446 39190488 -178846670 + (TTTTC)n Simple_repeat Simple_repeat 4 45 0 223 318 106 12 chr3 39190490 39190575 -178846583 - L2 LINE L2 -31 3241 3149 1781 216 63 44 chr3 39190772 39191359 -178845799 + L1ME1 LINE L1 5564 6161 -5 1117 178 190 26 chr3 39192113 39192382 -178844776 + MLT1D LTR MaLR 193 505 0 403 269 60 107 chr3 39192610 39192908 -178844250 + L2 LINE L2 3029 3312 -1 270 194 0 0 chr3 39193647 39193709 -178843449 + (CA)n Simple_repeat Simple_repeat 1 62 0 727 252 128 8 chr3 39193709 39193959 -178843199 + LTR16C LTR ERVL 141 420 -71 527 223 44 118 chr3 39194111 39194435 -178842723 - LTR25-int LTR ERV1 -984 4233 741 322 186 107 125 chr3 39194474 39194688 -178842470 - LTR25-int LTR ERV1 -2325 763 282 293 245 39 20 chr3 39194898 39195000 -178842158 - LTR25-int LTR ERV1 -6462 534 431 2422 130 162 2 chr3 39195222 39195654 -178841504 - MER61D LTR ERV1 0 501 1 683 109 21 0 chr3 39195656 39195783 -178841375 - L1M2 LINE L1 -721 5447 5317 420 340 162 20 chr3 39195984 39196440 -178840718 - LTR33 LTR ERVL -2 521 1 242 200 0 0 chr3 39197282 39197322 -178839836 + L3 LINE CR1 1530 1569 -8 2014 47 8 4 chr3 39197364 39197618 -178839540 + L1PA6 LINE L1 5900 6154 0 240 184 0 0 chr3 39197697 39197746 -178839412 + CT-rich Low_complexity Low_complexity 4 52 0 3773 126 30 75 chr3 39197756 39198479 -178838679 - LTR8 LTR ERV1 0 691 1 1275 255 103 11 chr3 39198486 39198738 -178838420 - MLT1G1 LTR MaLR -179 416 116 3077 189 45 32 chr3 39198738 39199456 -178837702 + LTR8A LTR ERV1 1 727 0 1275 255 103 11 chr3 39199456 39199583 -178837575 - MLT1G1 LTR MaLR -479 116 2 23 0 0 0 chr3 39199919 39199942 -178837216 + AT_rich Low_complexity Low_complexity 1 23 0 321 288 118 20 chr3 39200620 39200773 -178836385 - MLT1H LTR MaLR -315 234 67 1598 187 45 84 chr3 39200916 39201382 -178835776 + MLT1C LTR MaLR 6 453 -14 246 299 118 16 chr3 39202029 39202156 -178835002 + L2 LINE L2 2916 3055 -217 2293 125 30 22 chr3 39202730 39203091 -178834067 - THE1B LTR MaLR 0 364 1 645 265 40 26 chr3 39203314 39203735 -178833423 + MLT1G1 LTR MaLR 113 573 -22 945 241 18 18 chr3 39204159 39204383 -178832775 + MER58A DNA MER1_type 1 224 0 4375 74 35 8 chr3 39204628 39205220 -178831938 - LTR14B LTR ERVK 0 608 1 487 315 38 5 chr3 39205388 39205572 -178831586 - MLT1K LTR MaLR -248 340 151 747 168 31 42 chr3 39205688 39205879 -178831279 - MER53 DNA DNA 0 189 1 1698 189 16 7 chr3 39206212 39206518 -178830640 + AluSx SINE Alu 1 309 -3 6805 128 11 7 chr3 39206685 39207580 -178829578 - L1MA2 LINE L1 0 6304 5397 2319 138 5 27 chr3 39207580 39207951 -178829207 + THE1B LTR MaLR 2 364 0 6805 128 11 7 chr3 39207951 39208517 -178828641 - L1MA2 LINE L1 -907 5397 4835 317 285 79 30 chr3 39209197 39209362 -178827796 + MIR SINE MIR 63 235 -27 451 344 184 23 chr3 39209394 39209667 -178827491 - HAL1 LINE L1 -1602 905 677 2286 227 87 62 chr3 39209667 39210473 -178826685 + LTR1B LTR ERV1 1 826 0 451 344 184 23 chr3 39210473 39210684 -178826474 - HAL1 LINE L1 -1830 677 343 685 276 43 87 chr3 39210733 39211291 -178825867 + MLT1G LTR MaLR 20 595 0 260 326 49 28 chr3 39211367 39211511 -178825647 + MIR SINE MIR 60 206 -56 1014 198 11 0 chr3 39212362 39212549 -178824609 - MER5A DNA MER1_type 0 189 1 22 0 0 0 chr3 39212740 39212762 -178824396 + AT_rich Low_complexity Low_complexity 1 22 0 919 105 7 13 chr3 39213123 39213275 -178823883 + (TTTC)n Simple_repeat Simple_repeat 4 154 0 265 267 40 40 chr3 39213537 39213638 -178823520 + L2 LINE L2 2108 2208 -1106 425 289 182 11 chr3 39213743 39213930 -178823228 + MIR SINE MIR 44 262 0 211 254 48 0 chr3 39214438 39214501 -178822657 + MIR SINE MIR 139 204 -58 270 0 0 0 chr3 39215772 39215802 -178821356 + (CA)n Simple_repeat Simple_repeat 2 31 0 978 313 63 24 chr3 39215935 39216360 -178820798 - LTR16C LTR ERVL 0 491 50 3180 259 81 24 chr3 39216503 39217867 -178819291 + L1M4 LINE L1 3504 4944 -1202 299 304 28 31 chr3 39218148 39218347 -178818811 + MIR SINE MIR 2 171 -91 362 335 99 12 chr3 39219511 39219672 -178817486 + MLT2E LTR ERVL 34 208 -420 243 165 110 88 chr3 39219883 39219921 -178817237 + LTR33A LTR ERVL 431 467 -56 3953 176 93 5 chr3 39219921 39220533 -178816625 - MER6 DNA MER2_type 0 865 308 357 24 0 0 chr3 39220533 39220575 -178816583 + (CA)n Simple_repeat Simple_repeat 2 43 0 294 29 0 0 chr3 39220576 39220611 -178816547 + (TC)n Simple_repeat Simple_repeat 1 35 0 3953 176 93 5 chr3 39220611 39220791 -178816367 - MER6 DNA MER2_type -556 309 1 243 165 110 88 chr3 39220791 39220843 -178816315 + LTR33A LTR ERVL 467 523 0 268 224 0 0 chr3 39221196 39221245 -178815913 - MER6A DNA MER2_type -501 104 56 568 328 64 0 chr3 39221629 39221800 -178815358 + MIR SINE MIR 5 186 -76 2316 90 0 19 chr3 39222109 39222419 -178814739 + AluSx SINE Alu 1 304 -8 279 325 12 0 chr3 39222521 39222604 -178814554 - MER5A DNA MER1_type -104 85 2 606 271 93 29 chr3 39223845 39223979 -178813179 + LTR33 LTR ERVL 3 127 -394 2378 166 21 33 chr3 39223979 39224407 -178812751 + MSTB LTR MaLR 4 426 0 606 271 93 29 chr3 39224407 39224648 -178812510 + LTR33 LTR ERVL 127 427 -94 21 0 0 0 chr3 39224894 39224915 -178812243 + AT_rich Low_complexity Low_complexity 1 21 0 1875 180 21 12 chr3 39224989 39225323 -178811835 + MER1B DNA MER1_type 1 337 0 1593 162 84 36 chr3 39225488 39225846 -178811312 - THE1C LTR MaLR 0 375 1 2999 121 8 14 chr3 39225846 39226335 -178810823 - THE1C-int LTR MaLR 0 1580 1095 9994 109 18 3 chr3 39226352 39227961 -178809197 - L1P LINE L1 -1687 4459 2827 6651 85 7 0 chr3 39227961 39229461 -178807697 + L1PA8 LINE L1 4662 6166 -6 521 299 224 14 chr3 39229810 39230104 -178807054 - L2 LINE L2 -4 3309 2954 211 282 14 0 chr3 39230104 39230175 -178806983 + (CATATA)n Simple_repeat Simple_repeat 6 77 0 216 341 40 62 chr3 39230964 39231190 -178805968 + L2 LINE L2 1876 2096 -1218 248 362 43 6 chr3 39231748 39231911 -178805247 + L2 LINE L2 2338 2506 -808 1062 208 59 87 chr3 39232412 39232801 -178804357 - LTR40b LTR ERVL -84 378 1 417 189 0 0 chr3 39232801 39232875 -178804283 + LTR16C LTR ERVL 416 489 -2 290 230 40 0 chr3 39233777 39233851 -178803307 + CT-rich Low_complexity Low_complexity 4 80 0 22 56 0 0 chr3 39234157 39234193 -178802965 + AT_rich Low_complexity Low_complexity 1 36 0 476 311 44 32 chr3 39234274 39234522 -178802636 - MIR SINE MIR 0 262 12 965 233 100 29 chr3 39235057 39235336 -178801822 + AluJb SINE Alu 2 300 -2 351 274 0 51 chr3 39235486 39235603 -178801555 - L1MC4 LINE L1 -1318 6724 6614 320 330 0 0 chr3 39235517 39235614 -178801544 + L1MC4 LINE L1 6614 6710 -1332 * 24 0 0 0 chr3 39236024 39236048 -178801110 + AT_rich Low_complexity Low_complexity 1 24 0 317 211 41 32 chr3 39236048 39236171 -178800987 - L1MA9 LINE L1 -22 6290 6167 3497 74 13 13 chr3 39236440 39236898 -178800260 + LTR22A LTR ERVK 1 458 0 549 277 28 5 chr3 39236931 39237144 -178800014 - L1MC4 LINE L1 -2000 5808 5591 1844 170 19 19 chr3 39238283 39238595 -178798563 - AluJo SINE Alu 0 312 1 1261 153 65 47 chr3 39239066 39239232 -178797926 - LTR36 LTR ERV1 0 611 449 2572 73 0 3 chr3 39239232 39239546 -178797612 - AluSp SINE Alu 0 313 1 1261 153 65 47 chr3 39239546 39239921 -178797237 - LTR36 LTR ERV1 -162 449 11 5245 97 21 9 chr3 39239921 39240691 -178796467 + MER4E LTR ERV1 1 779 0 1261 153 65 47 chr3 39240691 39240703 -178796455 - LTR36 LTR ERV1 -600 11 1 4106 100 3 102 chr3 39241068 39241805 -178795353 + MER4A LTR ERV1 1 664 0 339 127 0 18 chr3 39241947 39242002 -178795156 + AluSg/x SINE Alu 107 160 -142 230 232 37 0 chr3 39243144 39243226 -178793932 + (TA)n Simple_repeat Simple_repeat 2 86 0 1211 177 33 46 chr3 39243718 39244033 -178793125 + MLT1B LTR MaLR 1 226 -164 1570 222 19 19 chr3 39244033 39244398 -178792760 - MLT1A1 LTR MaLR 0 365 1 1211 177 33 46 chr3 39244398 39244559 -178792599 + MLT1B LTR MaLR 226 388 -2 1800 135 0 0 chr3 39244582 39244849 -178792309 - AluSx SINE Alu 0 306 40 740 221 6 18 chr3 39244876 39245039 -178792119 + MER20 DNA MER1_type 2 162 -57 284 226 0 0 chr3 39245081 39245134 -178792024 + MER20 DNA MER1_type 167 219 0 2054 152 0 0 chr3 39245520 39245817 -178791341 + AluSx SINE Alu 1 297 -15 399 316 63 42 chr3 39247191 39247695 -178789463 + L1MEc LINE L1 338 852 -5544 526 234 262 0 chr3 39247697 39247911 -178789247 + SATR1 Satellite Satellite 200 469 -1 928 249 186 54 chr3 39247943 39248851 -178788307 + SATR1 Satellite Satellite 1 1027 -1 1098 198 271 17 chr3 39249026 39249546 -178787612 + SATR1 Satellite Satellite 1 651 -1 820 209 309 6 chr3 39249631 39250051 -178787107 + SATR1 Satellite Satellite 1 547 -247 * 1337 183 53 0 chr3 39250045 39250307 -178786851 + Tigger3(Golem) DNA MER2_type 2753 3028 -1 1167 163 54 17 chr3 39250309 39250536 -178786622 - Tigger2 DNA MER2_type 0 2718 2480 549 209 14 65 chr3 39250536 39250675 -178786483 + FLAM_C SINE Alu 2 133 0 1167 163 54 17 chr3 39250675 39250687 -178786471 - Tigger2 DNA MER2_type -238 2480 2470 2239 99 0 0 chr3 39253555 39253886 -178783272 + AluSx SINE Alu 1 331 0 312 256 77 34 chr3 39254556 39254673 -178782485 + MER96B DNA MER1_type? 296 417 0 431 300 147 0 chr3 39255013 39255163 -178781995 + MER5A DNA MER1_type 12 183 -6 26 0 0 0 chr3 39255187 39255213 -178781945 + AT_rich Low_complexity Low_complexity 1 26 0 4257 127 6 51 chr3 39255218 39255942 -178781216 + LTR8 LTR ERV1 1 691 0 23 68 0 0 chr3 39255963 39256007 -178781151 + AT_rich Low_complexity Low_complexity 1 44 0 2372 71 0 20 chr3 39256287 39256583 -178780575 - AluSc SINE Alu -19 290 1 223 231 31 0 chr3 39256972 39257037 -178780121 + CT-rich Low_complexity Low_complexity 2 68 0 321 250 103 9 chr3 39257664 39257780 -178779378 + MIR SINE MIR 74 200 -62 2053 210 37 16 chr3 39257796 39258310 -178778848 - MER34 LTR ERV1 -10 532 8 216 0 0 0 chr3 39258526 39258550 -178778608 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 457 235 77 104 chr3 39258700 39258883 -178778275 - MER5B DNA MER1_type 0 178 1 429 290 9 3 chr3 39259200 39259383 -178777775 + L1MC4a LINE L1 6450 6577 -1231 534 199 233 98 chr3 39259396 39259674 -178777484 + MSTD LTR MaLR 3 339 -57 359 131 12 24 chr3 39259674 39259758 -178777400 - L1PB1 LINE L1 -3 6148 6066 534 199 233 98 chr3 39259758 39259826 -178777332 + MSTD LTR MaLR 339 396 0 2195 232 263 18 chr3 39259873 39260852 -178776306 + L1MC4 LINE L1 6686 7903 -139 275 250 190 20 chr3 39261338 39261438 -178775720 + L2 LINE L2 3195 3311 -2 257 298 42 83 chr3 39261752 39261920 -178775238 + MIR3 SINE MIR 46 206 -2 619 297 45 32 chr3 39262531 39262777 -178774381 - LTR16C LTR ERVL -11 480 232 922 277 104 14 chr3 39262785 39263139 -178774019 + MLT1G1 LTR MaLR 11 396 -199 7036 47 1 0 chr3 39263141 39264037 -178773121 - L1PA5 LINE L1 -4 6150 5254 2953 31 0 5 chr3 39264040 39264421 -178772737 + L1PA5 LINE L1 4851 5229 -917 639 273 23 27 chr3 39264425 39264645 -178772513 + MLT1G1 LTR MaLR 372 590 0 1408 158 0 5 chr3 39265709 39265918 -178771240 - AluJb SINE Alu -104 208 1 1161 216 127 60 chr3 39266261 39266742 -178770416 - LTR1B LTR ERV1 0 826 314 767 160 47 12 chr3 39268746 39268915 -178768243 - L1MB1 LINE L1 -13 6155 5981 2125 172 42 29 chr3 39268928 39269123 -178768035 - L1MA10 LINE L1 -4 6330 6139 2403 69 0 3 chr3 39269123 39269427 -178767731 - AluY SINE Alu -8 303 1 2125 172 42 29 chr3 39269427 39269708 -178767450 - L1MA10 LINE L1 -195 6139 5848 2156 202 8 38 chr3 39269708 39270198 -178766960 - MER61-int LTR ERV1 -494 4723 4247 834 215 72 65 chr3 39270374 39270695 -178766463 - L1ME3A LINE L1 -4 6166 5844 420 240 31 23 chr3 39271474 39271603 -178765555 + MIR SINE MIR 133 262 0 296 248 113 57 chr3 39271774 39271915 -178765243 + MIR SINE MIR 86 234 -28 2386 107 0 0 chr3 39272478 39272788 -178764370 - AluSg SINE Alu 0 310 1 1432 199 59 17 chr3 39272923 39273279 -178763879 - MER31B LTR ERV1 -95 371 1 6325 134 44 13 chr3 39274993 39276075 -178761083 + Tigger3b DNA MER2_type 116 1231 0 219 286 71 0 chr3 39276111 39276181 -178760977 - MIR3 SINE MIR -15 193 119 254 232 43 14 chr3 39276267 39276336 -178760822 + C-rich Low_complexity Low_complexity 4 74 0 386 145 0 12 chr3 39276341 39276424 -178760734 + (TC)n Simple_repeat Simple_repeat 1 82 0 300 354 39 0 chr3 39276442 39276572 -178760586 + MIR3 SINE MIR 32 166 -42 396 292 59 19 chr3 39276592 39276780 -178760378 + MLT1J2 LTR MaLR 20 213 -233 209 245 75 0 chr3 39277041 39277094 -178760064 - L2 LINE L2 -2 3311 3255 587 210 96 19 chr3 39278437 39278594 -178758564 + MIR SINE MIR 89 257 -5 336 232 43 114 chr3 39278859 39279070 -178758088 + MLT1K LTR MaLR 378 573 -15 286 237 13 13 chr3 39279169 39279245 -178757913 + GA-rich Low_complexity Low_complexity 1 76 0 379 290 62 26 chr3 39279479 39279672 -178757486 - L3 LINE CR1 -180 1397 1198 2577 247 48 9 chr3 39280600 39281330 -178755828 + L1ME1 LINE L1 5400 6154 -12 228 324 10 20 chr3 39281613 39281715 -178755443 - MLT1J LTR MaLR -374 175 75 307 237 21 54 chr3 39283387 39283480 -178753678 + MER5A DNA MER1_type 74 163 -26 202 289 96 0 chr3 39285914 39285997 -178751161 + L2 LINE L2 3214 3304 -9 234 340 31 21 chr3 39286077 39286174 -178750984 - MIR SINE MIR -65 143 46 375 157 74 66 chr3 39286875 39286996 -178750162 - LTR37B LTR ERV1 -4 464 343 322 260 21 0 chr3 39287074 39287170 -178749988 - LTR37B LTR ERV1 -167 301 204 223 137 0 83 chr3 39287282 39287450 -178749708 + (TA)n Simple_repeat Simple_repeat 2 155 0 359 124 5 77 chr3 39287524 39287718 -178749440 + (TA)n Simple_repeat Simple_repeat 1 180 0 342 67 0 0 chr3 39288428 39288473 -178748685 + (TG)n Simple_repeat Simple_repeat 1 45 0 288 289 21 10 chr3 39289275 39289372 -178747786 - MLT1J LTR MaLR -413 98 1 686 139 8 33 chr3 39289401 39289523 -178747635 - FRAM SINE Alu -26 150 32 383 333 39 39 chr3 39289561 39289795 -178747363 - MIR SINE MIR -16 246 13 1796 210 42 2 chr3 39290011 39290411 -178746747 + MER63C DNA MER1_type 87 502 -428 650 290 27 27 chr3 39290421 39290645 -178746513 + MER58A DNA MER1_type 1 224 0 1044 199 74 52 chr3 39292426 39292697 -178744461 - MLT1B LTR MaLR -110 280 4 242 200 0 129 chr3 39293272 39293342 -178743816 + L2 LINE L2 3250 3310 -3 560 260 106 34 chr3 39293529 39293971 -178743187 - HAL1b LINE L1 -249 1099 626 415 283 71 90 chr3 39294241 39294563 -178742595 - HAL1b LINE L1 -1026 322 7 836 267 37 64 chr3 39294773 39295096 -178742062 + MER21B LTR ERV1 332 645 -218 1977 200 41 91 chr3 39295096 39295655 -178741503 - LTR26E LTR ERV1 0 622 1 559 269 42 6 chr3 39295655 39295820 -178741338 + MER21B LTR ERV1 642 812 -51 2095 184 68 42 chr3 39296939 39297395 -178739763 + MLT1D LTR MaLR 38 505 0 388 275 127 48 chr3 39299829 39300269 -178736889 - MLT1K LTR MaLR -1 475 1 721 269 77 27 chr3 39300289 39300535 -178736623 + MLT1D LTR MaLR 2 260 -245 244 209 128 35 chr3 39300535 39300621 -178736537 - MER34 LTR ERV1 0 542 449 73 57 0 0 chr3 39300671 39300793 -178736365 + AT_rich Low_complexity Low_complexity 1 122 0 927 233 43 0 chr3 39302197 39302407 -178734751 + MER20 DNA MER1_type 1 219 0 265 114 0 0 chr3 39302868 39302903 -178734255 - U2 snRNA snRNA -153 35 1 181 368 75 19 chr3 39302938 39303044 -178734114 - MIR SINE MIR -81 127 16 2025 253 66 12 chr3 39303239 39303800 -178733358 + MLT1G1 LTR MaLR 5 595 0 2026 125 3 30 chr3 39304133 39304438 -178732720 + AluSx SINE Alu 1 297 -15 765 281 88 24 chr3 39305158 39306189 -178730969 + L1ME3A LINE L1 4758 5852 -318 38 0 0 0 chr3 39307373 39307411 -178729747 + AT_rich Low_complexity Low_complexity 1 38 0 767 277 59 84 chr3 39308196 39308637 -178728521 - MER110 LTR ERV1 0 468 80 29 0 0 0 chr3 39309008 39309037 -178728121 + AT_rich Low_complexity Low_complexity 1 29 0 216 293 35 0 chr3 39309239 39309297 -178727861 + MIR SINE MIR 203 262 0 226 314 0 0 chr3 39309360 39309411 -178727747 + L2 LINE L2 3212 3262 -10 263 257 0 0 chr3 39311058 39311128 -178726030 + MLT1J LTR MaLR 111 180 -331 2276 104 0 19 chr3 39311904 39312220 -178724938 + AluSg SINE Alu 1 310 0 234 333 72 0 chr3 39312463 39312574 -178724584 + MIR SINE MIR 84 202 -60 192 320 67 13 chr3 39314161 39314236 -178722922 - MIR3 SINE MIR -5 203 125 189 0 0 0 chr3 39314751 39314772 -178722386 + (CAA)n Simple_repeat Simple_repeat 1 21 0 7044 58 8 3 chr3 39315029 39315932 -178721226 - L1PA8 LINE L1 0 6172 5266 4053 97 0 0 chr3 39315930 39316515 -178720643 + L1PA8 LINE L1 4673 5257 -889 * 22 0 0 0 chr3 39316516 39316538 -178720620 + AT_rich Low_complexity Low_complexity 1 22 0 192 309 126 97 chr3 39316953 39317222 -178719936 + L2 LINE L2 2615 2891 -423 1897 161 58 3 chr3 39317775 39318105 -178719053 + MSTC LTR MaLR 81 428 0 343 229 0 0 chr3 39318217 39318278 -178718880 + Tigger2 DNA MER2_type 1 61 -2657 239 191 103 73 chr3 39318287 39318355 -178718803 - MER2 DNA MER2_type 0 345 276 * 735 244 54 6 chr3 39318322 39318490 -178718668 - MER8 DNA MER2_type -63 176 1 210 239 0 0 chr3 39318670 39318716 -178718442 + (TGGA)n Simple_repeat Simple_repeat 4 49 0 235 370 33 11 chr3 39319356 39319448 -178717710 - L3 LINE CR1 -104 1473 1380 4344 259 67 31 chr3 39320356 39323367 -178713791 + L1ME1 LINE L1 35 2936 -3299 1549 179 7 33 chr3 39323367 39323668 -178713490 + AluJb SINE Alu 6 298 -14 4344 259 67 31 chr3 39323668 39324603 -178712555 + L1ME1 LINE L1 2936 6187 -48 345 254 26 9 chr3 39324535 39324649 -178712509 + L1MA10 LINE L1 6280 6395 -8 * 216 152 45 0 chr3 39325399 39325465 -178711693 + (TA)n Simple_repeat Simple_repeat 2 70 0 571 196 77 36 chr3 39325713 39325907 -178711251 + L1ME3A LINE L1 5753 5954 -216 301 261 176 17 chr3 39326243 39326362 -178710796 + AluJb SINE Alu 2 139 -163 908 160 0 101 chr3 39326529 39326748 -178710410 + L1MA9 LINE L1 6078 6274 -38 300 309 39 11 chr3 39326798 39326976 -178710182 - L1ME LINE L1 -337 5784 5602 253 317 92 17 chr3 39327015 39327135 -178710023 - L1ME LINE L1 -2226 5582 5454 264 213 223 11 chr3 39327142 39327236 -178709922 + L2 LINE L2 3195 3308 -5 22 0 0 0 chr3 39327380 39327402 -178709756 + AT_rich Low_complexity Low_complexity 1 22 0 5426 34 0 0 chr3 39327421 39328060 -178709098 - L1PA5 LINE L1 -2 6152 5514 23367 78 9 0 chr3 39328060 39331155 -178706003 - L1P LINE L1 -3024 3122 1 272 377 97 39 chr3 39332291 39332821 -178704337 + L2 LINE L2 2354 2924 -390 1982 125 3 21 chr3 39332821 39333145 -178704013 - AluSx SINE Alu 0 319 1 272 377 97 39 chr3 39333145 39333202 -178703956 + L2 LINE L2 2924 2976 -338 397 212 124 44 chr3 39333607 39333720 -178703438 + MIR SINE MIR 43 164 -98 216 214 0 0 chr3 39333783 39333825 -178703333 + (TA)n Simple_repeat Simple_repeat 2 43 0 377 302 65 12 chr3 39333882 39334051 -178703107 - MLT1J LTR MaLR -317 194 17 359 287 30 0 chr3 39334057 39334158 -178703000 + MIR SINE MIR 159 262 0 320 339 8 24 chr3 39334140 39334264 -178702894 - MIR SINE MIR -101 161 40 * 1291 247 69 45 chr3 39334693 39335142 -178702016 + MLT1C LTR MaLR 8 467 0 202 403 67 8 chr3 39336040 39336174 -178700984 - L2 LINE L2 -2 3270 3129 23 97 0 0 chr3 39336759 39336831 -178700327 + AT_rich Low_complexity Low_complexity 1 72 0 14373 134 35 3 chr3 39336985 39339326 -178697832 - Tigger1 DNA MER2_type -2 2416 1 257 236 94 4 chr3 39340438 39340526 -178696632 + MIR SINE MIR 50 143 -65 207 0 0 0 chr3 39340868 39340891 -178696267 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 181 214 60 128 chr3 39341061 39341178 -178695980 + MIR SINE MIR 146 254 -8 231 309 74 78 chr3 39342366 39342609 -178694549 - L3b LINE CR1 -222 1361 1120 1416 183 0 37 chr3 39343089 39343386 -178693772 + AluJo SINE Alu 21 307 0 22 0 0 0 chr3 39343978 39344000 -178693158 + AT_rich Low_complexity Low_complexity 1 22 0 25 46 0 46 chr3 39344139 39344177 -178692981 + AT_rich Low_complexity Low_complexity 1 37 -25 2180 107 0 0 chr3 39344177 39344481 -178692677 - AluSg SINE Alu 0 304 1 25 46 0 46 chr3 39344481 39344506 -178692652 + AT_rich Low_complexity Low_complexity 37 62 0 21 0 0 0 chr3 39344990 39345011 -178692147 + AT_rich Low_complexity Low_complexity 1 21 0 309 259 35 0 chr3 39345496 39345581 -178691577 - L2 LINE L2 -2 3270 3183 2158 153 14 0 chr3 39347013 39347379 -178689779 - THE1C LTR MaLR -4 371 1 374 253 199 7 chr3 39347507 39347653 -178689505 + MER5A DNA MER1_type 14 187 -2 1336 222 65 16 chr3 39347782 39348165 -178688993 - Charlie4a DNA MER1_type -101 407 6 242 231 0 0 chr3 39348745 39348797 -178688361 + L2 LINE L2 3261 3312 -1 255 255 21 21 chr3 39349687 39349781 -178687377 + (CATATA)n Simple_repeat Simple_repeat 3 96 0 386 207 42 136 chr3 39349813 39350026 -178687132 + L1MEd LINE L1 789 981 -5138 25 31 0 0 chr3 39350057 39350089 -178687069 + AT_rich Low_complexity Low_complexity 1 32 0 463 325 81 4 chr3 39350162 39350521 -178686637 + L1ME3 LINE L1 5255 5639 -525 476 288 164 31 chr3 39350527 39350753 -178686405 + MIR SINE MIR 3 258 -4 442 260 34 25 chr3 39350812 39350983 -178686175 + L1ME3 LINE L1 5655 5829 -333 725 250 0 13 chr3 39351005 39351161 -178685997 + MER58A DNA MER1_type 45 198 -26 47 44 0 0 chr3 39351174 39351242 -178685916 + AT_rich Low_complexity Low_complexity 1 68 0 557 261 81 19 chr3 39351461 39351622 -178685536 + MER5B DNA MER1_type 8 178 0 6417 154 16 14 chr3 39351867 39353738 -178683420 - L1MA2 LINE L1 0 6304 4432 3940 245 88 39 chr3 39353724 39355206 -178681952 - L1M4 LINE L1 -4974 1568 15 * 306 132 0 19 chr3 39356068 39356121 -178681037 + L2 LINE L2 3262 3313 0 2273 170 67 0 chr3 39357930 39358331 -178678827 + MSTA LTR MaLR 1 428 0 257 342 57 36 chr3 39358430 39358623 -178678535 + MER117 DNA MER1_type 1 197 0 7608 22 7 0 chr3 39359191 39360310 -178676848 + L1PA2 LINE L1 5030 6155 0 21 57 0 0 chr3 39360310 39360345 -178676813 + AT_rich Low_complexity Low_complexity 1 35 0 384 125 0 0 chr3 39360996 39361060 -178676098 + (TTCCC)n Simple_repeat Simple_repeat 3 66 0 271 150 20 150 chr3 39361692 39361792 -178675366 + MLT1H LTR MaLR 3 89 -460 348 273 10 0 chr3 39361997 39362096 -178675062 + MLT1H LTR MaLR 450 549 0 416 96 32 11 chr3 39362720 39362814 -178674344 + (TA)n Simple_repeat Simple_repeat 2 97 0 1416 173 22 29 chr3 39363584 39363856 -178673302 + AluJo SINE Alu 39 308 -4 786 276 43 83 chr3 39363965 39364363 -178672795 + LTR16B LTR ERVL 83 464 0 183 379 10 0 chr3 39364368 39364471 -178672687 - L2 LINE L2 -1027 2287 2184 799 237 131 0 chr3 39365278 39365476 -178671682 - MER58A DNA MER1_type 0 224 1 809 144 75 0 chr3 39366443 39366616 -178670542 + MER53 DNA DNA 3 188 -1 466 271 97 7 chr3 39366719 39366863 -178670295 - MLT1J2 LTR MaLR -7 443 287 1902 291 107 81 chr3 39367076 39368573 -178668585 - L2 LINE L2 -37 3276 1751 250 400 84 13 chr3 39368618 39368773 -178668385 - L2 LINE L2 -1 3271 3106 859 212 41 0 chr3 39369124 39369294 -178667864 + MER5A DNA MER1_type 10 186 -3 2637 163 42 12 chr3 39369626 39370124 -178667034 - L1PA16 LINE L1 -16 6150 5638 3339 122 8 2 chr3 39370126 39370628 -178666530 + L1PA14 LINE L1 5656 6160 -1 2140 99 0 10 chr3 39370627 39370939 -178666219 - L1PA16 LINE L1 -501 5665 5357 * 346 255 186 12 chr3 39371548 39371709 -178665449 - MIR SINE MIR 0 262 74 1885 115 82 75 chr3 39372325 39372752 -178664406 - MSTB1 LTR MaLR -2 430 1 235 282 235 0 chr3 39372753 39372838 -178664320 + MIR SINE MIR 110 214 -48 598 292 53 4 chr3 39373019 39373262 -178663896 - MIR SINE MIR -3 259 5 266 344 94 6 chr3 39374337 39374497 -178662661 - MIR SINE MIR -60 202 29 348 211 133 34 chr3 39374536 39374641 -178662517 + MER5A DNA MER1_type 4 134 -55 1555 191 13 20 chr3 39374641 39374940 -178662218 - AluJo SINE Alu -8 304 8 348 211 133 34 chr3 39374940 39374991 -178662167 + MER5A DNA MER1_type 134 179 -10 238 258 0 45 chr3 39376175 39376241 -178660917 - LTR50 LTR ERVL -346 449 387 2214 171 10 10 chr3 39376725 39377128 -178660030 - MER57A LTR ERV1 0 403 1 279 246 57 57 chr3 39377255 39377377 -178659781 + MER112 DNA MER1_type 30 151 -109 15363 100 39 31 chr3 39377725 39380293 -178656865 + L1PBa LINE L1 3 2589 -4274 312 27 0 0 chr3 39380424 39380461 -178656697 + (TC)n Simple_repeat Simple_repeat 1 37 0 2436 146 24 9 chr3 39380515 39380941 -178656217 + MSTB1 LTR MaLR 1 432 0 890 190 92 0 chr3 39380943 39381138 -178656020 + MER20 DNA MER1_type 7 219 0 817 152 99 7 chr3 39382395 39382546 -178654612 - MER5A DNA MER1_type -15 174 10 927 287 105 32 chr3 39382787 39383167 -178653991 - MLT1K LTR MaLR -178 410 3 23 68 0 0 chr3 39384074 39384118 -178653040 + AT_rich Low_complexity Low_complexity 1 44 0 701 332 9 29 chr3 39384716 39385056 -178652102 - LTR16C LTR ERVL -90 401 69 2316 99 23 0 chr3 39385335 39385637 -178651521 - AluSg SINE Alu -1 309 1 230 154 0 39 chr3 39386139 39386191 -178650967 - HsTC2 DNA Tc2 -1835 63 14 216 0 0 0 chr3 39386647 39386671 -178650487 + (T)n Simple_repeat Simple_repeat 1 24 0 183 306 0 0 chr3 39387889 39387938 -178649220 + MIR SINE MIR 95 143 -119 3961 173 14 9 chr3 39387991 39388770 -178648388 - L1PB4 LINE L1 -4 6152 5370 239 156 16 31 chr3 39388898 39388962 -178648196 + (TAA)n Simple_repeat Simple_repeat 1 63 0 405 0 0 0 chr3 39389225 39389270 -178647888 + (TG)n Simple_repeat Simple_repeat 1 45 0 336 133 0 0 chr3 39389273 39389333 -178647825 + (GA)n Simple_repeat Simple_repeat 1 60 0 3667 111 20 0 chr3 39389351 39389892 -178647266 + MER41A LTR ERV1 3 554 0 5154 123 44 6 chr3 39389977 39390797 -178646361 + MER41A-int LTR ERV1 1 851 -5095 4127 160 88 22 chr3 39390788 39391764 -178645394 + MER41A-int LTR ERV1 934 2220 -3726 * 12750 153 71 50 chr3 39391745 39393879 -178643279 + MER41A-int LTR ERV1 2648 4873 -1073 2025 119 33 23 chr3 39393879 39394182 -178642976 + AluSx SINE Alu 1 306 -6 12750 153 71 50 chr3 39394182 39395277 -178641881 + MER41A-int LTR ERV1 4873 5944 -2 4269 81 0 0 chr3 39395277 39395831 -178641327 + MER41A LTR ERV1 1 554 0 2187 125 0 0 chr3 39395897 39396194 -178640964 - AluSg SINE Alu -13 297 1 367 297 171 0 chr3 39396203 39396378 -178640780 - L1ME4a LINE L1 -238 5883 5679 30 69 0 0 chr3 39396711 39396769 -178640389 + AT_rich Low_complexity Low_complexity 1 58 0 314 210 32 0 chr3 39396894 39396956 -178640202 - MIR SINE MIR -103 105 42 235 148 0 131 chr3 39397560 39397621 -178639537 + L2 LINE L2 3261 3313 0 500 300 12 42 chr3 39397671 39397911 -178639247 - L2 LINE L2 -37 3276 3044 1049 237 84 3 chr3 39397914 39398260 -178638898 - Zaphod DNA AcHobo -4 4027 3654 1163 250 44 45 chr3 39398291 39398930 -178638228 - Zaphod DNA AcHobo -3030 1001 364 435 290 14 0 chr3 39398936 39399074 -178638084 - MLT1F1 LTR MaLR 0 567 428 740 270 46 8 chr3 39399177 39399418 -178637740 - MER69 DNA AcHobo -2211 315 66 325 352 99 30 chr3 39401188 39401421 -178635737 + L2 LINE L2 2825 3073 -199 395 283 66 20 chr3 39401421 39401619 -178635539 + MER106A DNA MER1_type 1 207 -29 242 360 61 0 chr3 39401772 39401886 -178635272 + L2 LINE L2 3146 3266 -6 1524 204 21 43 chr3 39402356 39402728 -178634430 + MLT1A1 LTR MaLR 1 364 -1 550 340 33 12 chr3 39402811 39403055 -178634103 - MIR SINE MIR -4 258 10 218 261 15 15 chr3 39403404 39403469 -178633689 + GA-rich Low_complexity Low_complexity 2 66 0 412 316 119 21 chr3 39404259 39404452 -178632706 + MIR SINE MIR 13 224 -38 207 0 0 0 chr3 39405041 39405064 -178632094 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 483 304 70 25 chr3 39406596 39406797 -178630361 - MIR SINE MIR -34 228 19 355 281 99 54 chr3 39408695 39409016 -178628142 + L2 LINE L2 2736 3072 -200 284 276 252 0 chr3 39409806 39409929 -178627229 + L2 LINE L2 3160 3313 0 483 363 59 17 chr3 39411092 39411329 -178625829 + MIR SINE MIR 10 256 -6 306 0 0 0 chr3 39411779 39411813 -178625345 + (CA)n Simple_repeat Simple_repeat 1 34 0 345 240 8 32 chr3 39412420 39412545 -178624613 + L1MC4 LINE L1 7920 8041 -1 22 0 0 0 chr3 39412803 39412825 -178624333 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 39412970 39412993 -178624165 + AT_rich Low_complexity Low_complexity 1 23 0 818 185 47 31 chr3 39413901 39414092 -178623066 + MIR SINE MIR 42 238 -24 543 196 30 112 chr3 39415954 39416240 -178620918 - L1MD3 LINE L1 -14 7981 6072 811 262 74 4 chr3 39416326 39416555 -178620603 + MIR SINE MIR 13 257 -5 1761 170 0 41 chr3 39417487 39417805 -178619353 - AluJo SINE Alu -7 305 1 435 253 107 65 chr3 39417904 39418410 -178618748 + L1ME4a LINE L1 5543 6069 -52 945 226 144 50 chr3 39418671 39419033 -178618125 - MLT1D LTR MaLR 0 505 110 1308 167 5 0 chr3 39419060 39419276 -178617882 - U3 snRNA snRNA 0 217 1 2150 184 52 27 chr3 39419308 39419472 -178617686 - LTR32 LTR ERVL 0 471 313 2346 102 0 3 chr3 39419472 39419777 -178617381 + AluSc SINE Alu 1 304 -5 2150 184 52 27 chr3 39419777 39420058 -178617100 - LTR32 LTR ERVL -158 313 15 412 162 0 27 chr3 39420038 39420112 -178617046 - LTR32 LTR ERVL -383 88 17 * 263 255 32 32 chr3 39420099 39420193 -178616965 - MLT1D LTR MaLR -528 98 5 * 448 215 155 84 chr3 39420467 39420718 -178616440 - LTR33 LTR ERVL -24 497 229 396 288 13 52 chr3 39420744 39420897 -178616261 - LTR33 LTR ERVL -373 148 2 870 296 60 26 chr3 39420899 39421314 -178615844 - L2 LINE L2 -1248 2066 1638 1987 185 44 22 chr3 39421577 39421987 -178615171 - MSTB1 LTR MaLR -13 419 1 409 273 32 45 chr3 39422079 39422299 -178614859 - MER113 DNA MER1_type? -304 217 1 780 224 141 42 chr3 39423422 39423833 -178613325 - MLT1C LTR MaLR 0 467 8 238 293 91 0 chr3 39424371 39424470 -178612688 - MIR SINE MIR -48 214 107 1281 187 4 4 chr3 39425798 39426076 -178611082 + L1MA4 LINE L1 6018 6295 -5 186 280 174 38 chr3 39427350 39427482 -178609676 + L2 LINE L2 3122 3271 -1 540 205 21 115 chr3 39427613 39427797 -178609361 + MER58B DNA MER1_type 173 341 0 2015 148 0 7 chr3 39428296 39428599 -178608559 - AluSx SINE Alu -11 301 1 867 283 39 18 chr3 39428768 39429047 -178608111 - MLT1I LTR MaLR -4 405 121 498 252 32 93 chr3 39429183 39429429 -178607729 - L2 LINE L2 0 3313 3083 279 358 63 29 chr3 39429414 39429621 -178607537 - L2 LINE L2 -3064 250 37 * 221 244 22 0 chr3 39430647 39430692 -178606466 - L2 LINE L2 -21 3251 3206 1027 275 25 18 chr3 39430695 39430971 -178606187 + MLT1H LTR MaLR 13 290 -259 554 292 78 7 chr3 39431238 39431392 -178605766 - MIR SINE MIR -49 213 49 347 260 105 50 chr3 39434101 39434282 -178602876 + MIR SINE MIR 66 256 -6 600 277 121 49 chr3 39435238 39435800 -178601358 + MLT1E1 LTR MaLR 1 621 -3 375 89 0 0 chr3 39435911 39435967 -178601191 + (CA)n Simple_repeat Simple_repeat 1 56 0 10843 180 10 1 chr3 39436121 39439012 -178598146 + L1PA14 LINE L1 3254 6161 0 2049 205 103 40 chr3 39439597 39440420 -178596738 + MER63C DNA MER1_type 1 930 0 24 0 0 0 chr3 39440874 39440898 -178596260 + AT_rich Low_complexity Low_complexity 1 24 0 431 286 193 32 chr3 39440999 39441656 -178595502 + HAL1b LINE L1 93 855 -493 5426 215 30 15 chr3 39441660 39443634 -178593524 + L1MC1 LINE L1 4330 6330 -3 21 57 0 0 chr3 39444285 39444320 -178592838 + AT_rich Low_complexity Low_complexity 1 35 0 527 331 14 32 chr3 39444321 39444555 -178592603 - MIR SINE MIR -31 231 2 231 281 73 0 chr3 39444654 39444736 -178592422 - MIR SINE MIR -73 189 102 229 197 16 0 chr3 39445697 39445758 -178591400 - L1ME4a LINE L1 0 6121 6060 4797 80 17 5 chr3 39445835 39446487 -178590671 - PABL_A LTR ERV1 0 660 1 449 240 107 7 chr3 39446497 39446647 -178590511 + L1ME3 LINE L1 5997 6161 -1 496 266 80 42 chr3 39447267 39447530 -178589628 - LTR16A1 LTR ERVL -40 417 145 24 0 0 0 chr3 39448621 39448645 -178588513 + AT_rich Low_complexity Low_complexity 1 24 0 375 235 106 31 chr3 39448719 39448859 -178588299 + MIR SINE MIR 41 190 -62 3919 154 7 9 chr3 39448881 39449563 -178587595 + L1PA16 LINE L1 5476 6156 -10 355 269 71 50 chr3 39450010 39450151 -178587007 + MIR3 SINE MIR 35 178 -30 413 183 140 0 chr3 39450543 39450636 -178586522 - LTR47A LTR ERVL -86 366 261 805 145 0 0 chr3 39450864 39450981 -178586177 + AluSq/x SINE Alu 1 117 -196 9926 48 3 0 chr3 39450981 39452993 -178584165 - L1PA5 LINE L1 0 6154 4137 2382 32 0 0 chr3 39452993 39453278 -178583880 + L1P LINE L1 3609 3893 -2253 491 270 12 123 chr3 39453656 39453908 -178583250 - MLT1J LTR MaLR -145 366 143 212 213 307 0 chr3 39454325 39454400 -178582758 - MER5A DNA MER1_type -88 101 4 1339 182 38 22 chr3 39454412 39454730 -178582428 + MER33 DNA MER1_type 2 324 0 488 301 26 7 chr3 39454754 39454907 -178582251 + MIR SINE MIR 53 208 -54 189 0 0 0 chr3 39457466 39457487 -178579671 + (GA)n Simple_repeat Simple_repeat 2 22 0 180 0 0 0 chr3 39458559 39458579 -178578579 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 1251 182 45 57 chr3 39459538 39459940 -178577218 + L1ME2 LINE L1 5732 6065 -99 238 127 14 84 chr3 39459908 39459979 -178577179 - L1MC4 LINE L1 -1339 6703 6638 * 456 286 34 55 chr3 39460174 39460412 -178576746 - MIR SINE MIR -14 248 16 198 0 0 0 chr3 39461385 39461407 -178575751 + (CA)n Simple_repeat Simple_repeat 1 22 0 342 0 0 0 chr3 39461435 39461473 -178575685 + (CA)n Simple_repeat Simple_repeat 1 38 0 348 332 199 5 chr3 39462642 39462853 -178574305 + MIR SINE MIR 1 252 -10 1872 284 18 34 chr3 39464762 39465435 -178571723 + MLT2F LTR ERVL 1 662 -1 180 77 0 0 chr3 39465706 39465732 -178571426 + (TA)n Simple_repeat Simple_repeat 1 26 0 234 62 0 0 chr3 39465733 39465765 -178571393 + (TG)n Simple_repeat Simple_repeat 2 33 0 779 352 82 25 chr3 39466151 39466739 -178570419 + L3 LINE CR1 939 1559 -18 535 341 56 20 chr3 39467028 39467333 -178569825 + MER102b DNA MER1_type 26 341 0 320 258 25 33 chr3 39467420 39467540 -178569618 - LTR16C LTR ERVL 0 491 373 1099 177 32 85 chr3 39468001 39468153 -178569005 + MER58B DNA MER1_type 1 159 -2261 1037 16 8 0 chr3 39468153 39468279 -178568879 - L1PA6 LINE L1 0 6154 6028 1099 177 32 85 chr3 39468279 39468509 -178568649 + MER58B DNA MER1_type 159 341 0 342 320 39 0 chr3 39469194 39469297 -178567861 - L2 LINE L2 0 3272 3166 181 324 54 0 chr3 39470223 39470297 -178566861 + MIR3 SINE MIR 84 161 -47 27 29 0 0 chr3 39471075 39471109 -178566049 + AT_rich Low_complexity Low_complexity 1 34 0 618 330 32 5 chr3 39471604 39471792 -178565366 - MER91A DNA MER1_type -3 193 1 419 295 29 0 chr3 39473009 39473114 -178564044 - L2 LINE L2 -3 3310 3203 332 221 55 90 chr3 39473447 39473592 -178563566 - L1ME3A LINE L1 -8 6162 6023 617 203 27 27 chr3 39473962 39474110 -178563048 - L1ME3A LINE L1 -189 5981 5834 423 0 0 0 chr3 39474335 39474382 -178562776 + (TG)n Simple_repeat Simple_repeat 2 48 0 3969 205 69 85 chr3 39476113 39478135 -178559023 + L1MC4a LINE L1 5791 7808 0 937 254 72 6 chr3 39478152 39478330 -178558828 + L1ME3A LINE L1 810 975 -5421 2152 154 58 51 chr3 39478330 39478817 -178558341 + LTR2B LTR ERV1 1 490 0 937 254 72 6 chr3 39478817 39478985 -178558173 + L1ME3A LINE L1 975 1179 -5217 671 245 21 30 chr3 39479028 39479265 -178557893 + L1ME3A LINE L1 4495 4729 -1486 * 6862 28 0 0 chr3 39479257 39480076 -178557082 - L1PA3 LINE L1 -852 5294 4476 7160 20 0 1 chr3 39480076 39480906 -178556252 + L1PA3 LINE L1 5326 6155 0 31 0 0 0 chr3 39480906 39480937 -178556221 + AT_rich Low_complexity Low_complexity 1 31 0 260 216 112 9 chr3 39481026 39481142 -178556016 + L1ME3A LINE L1 5190 5317 -898 6042 210 30 24 chr3 39481185 39484552 -178552606 - L1MC1 LINE L1 0 6613 23 532 264 121 68 chr3 39485008 39485273 -178551885 - LTR33A LTR ERVL -242 281 3 378 262 77 37 chr3 39486336 39486622 -178550536 - MLT1G LTR MaLR -22 520 111 747 243 98 0 chr3 39486686 39486859 -178550299 + MER20 DNA MER1_type 30 219 0 336 274 60 17 chr3 39486859 39486971 -178550187 - MLT1G LTR MaLR -472 118 2 1458 59 134 4 chr3 39487058 39487296 -178549862 - L1MA1 LINE L1 0 6302 6034 277 344 85 67 chr3 39488114 39488445 -178548713 - L2 LINE L2 -2 3270 2934 1135 234 86 70 chr3 39489071 39489570 -178547588 + L1ME3A LINE L1 5718 6224 -15 273 346 40 0 chr3 39490398 39490499 -178546659 - Charlie8 DNA MER1_type -2310 107 3 314 295 141 26 chr3 39490500 39490656 -178546502 - MIR SINE MIR -59 203 30 22 56 0 0 chr3 39491510 39491546 -178545612 + AT_rich Low_complexity Low_complexity 1 36 0 3411 98 4 41 chr3 39492124 39492664 -178544494 - L1MA1 LINE L1 -78 6224 5705 * 14693 170 21 11 chr3 39492661 39496183 -178540975 - L1 LINE L1 -1031 6534 2977 5484 125 0 4 chr3 39496197 39497007 -178540151 - L1PA11 LINE L1 -12 6162 5356 1782 120 87 95 chr3 39497007 39497205 -178539953 - THE1B LTR MaLR 0 364 169 1945 116 0 0 chr3 39497205 39497464 -178539694 - AluSg1 SINE Alu -50 259 1 1782 120 87 95 chr3 39497464 39497632 -178539526 - THE1B LTR MaLR -195 169 1 3338 83 0 0 chr3 39497632 39498066 -178539092 - THE1B-int LTR MaLR 0 1580 1147 1712 193 66 30 chr3 39498066 39498429 -178538729 + MSTA LTR MaLR 53 428 0 10335 172 35 19 chr3 39498429 39500247 -178536911 - L1 LINE L1 -5710 1855 8 446 264 61 71 chr3 39500346 39500421 -178536737 - L1M4 LINE L1 -2301 3845 3771 18071 68 6 7 chr3 39500421 39503646 -178533512 - L1PA7 LINE L1 -3 6151 2931 446 264 61 71 chr3 39503646 39503865 -178533293 - L1M4 LINE L1 -2375 3771 3554 284 297 68 20 chr3 39503901 39504049 -178533109 + MIR SINE MIR 91 245 -17 21 0 0 0 chr3 39504154 39504175 -178532983 + AT_rich Low_complexity Low_complexity 1 21 0 236 200 60 0 chr3 39505473 39505523 -178531635 + MIR SINE MIR 95 147 -115 417 398 64 28 chr3 39506964 39507399 -178529759 - L2 LINE L2 0 3272 2822 237 357 52 29 chr3 39507518 39507728 -178529430 - L2 LINE L2 -624 2690 2476 524 351 74 27 chr3 39508037 39508434 -178528724 - L2 LINE L2 -181 3091 2670 666 252 32 76 chr3 39508494 39508744 -178528414 + Charlie8 DNA MER1_type 33 271 -2146 2309 264 144 30 chr3 39508828 39509870 -178527288 + L2 LINE L2 1529 2689 -625 583 261 72 6 chr3 39509886 39510066 -178527092 - L1MC4a LINE L1 -371 7437 7246 2020 117 18 96 chr3 39510414 39510608 -178526550 + THE1B LTR MaLR 1 151 -213 2065 127 0 0 chr3 39510608 39510935 -178526223 + AluSq SINE Alu 1 327 0 2020 117 18 96 chr3 39510935 39511134 -178526024 + THE1B LTR MaLR 151 364 0 330 321 43 63 chr3 39511138 39511440 -178525718 + LTR16C LTR ERVL 181 476 -15 186 262 226 0 chr3 39511648 39511732 -178525426 - L2 LINE L2 -1481 1833 1731 270 294 0 46 chr3 39511866 39511975 -178525183 - L2 LINE L2 -300 2972 2869 281 244 30 30 chr3 39512138 39512273 -178524885 - L1MC5 LINE L1 -319 7642 7508 2201 117 0 0 chr3 39513271 39513570 -178523588 + AluSx SINE Alu 1 299 -13 449 311 88 10 chr3 39514071 39514264 -178522894 - MLT1I LTR MaLR -7 402 195 536 219 9 9 chr3 39514277 39514391 -178522767 + FAM SINE Alu 44 157 -28 1096 83 24 0 chr3 39514405 39514519 -178522639 + (GGAAA)n Simple_repeat Simple_repeat 1 288 0 1096 83 24 0 chr3 39514519 39514687 -178522471 + (GGAAA)n Simple_repeat Simple_repeat 4 175 0 263 211 18 0 chr3 39514716 39514773 -178522385 - MLT1I LTR MaLR -232 177 120 29 0 0 0 chr3 39514903 39514932 -178522226 + AT_rich Low_complexity Low_complexity 1 29 0 1068 198 24 5 chr3 39514956 39515163 -178521995 - MER2 DNA MER2_type -134 211 1 998 261 149 36 chr3 39515271 39515600 -178521558 + LTR16C LTR ERVL 126 491 0 22 0 0 0 chr3 39517443 39517465 -178519693 + AT_rich Low_complexity Low_complexity 1 22 0 1455 191 14 3 chr3 39517499 39517781 -178519377 - L1PA15 LINE L1 -2 6163 5879 336 276 50 45 chr3 39518344 39518565 -178518593 + L1MC5 LINE L1 7687 7908 -53 686 221 82 57 chr3 39518759 39519039 -178518119 + L1MC4 LINE L1 7189 7475 -567 30 27 0 0 chr3 39519871 39519908 -178517250 + AT_rich Low_complexity Low_complexity 1 37 0 24 32 0 0 chr3 39519992 39520023 -178517135 + AT_rich Low_complexity Low_complexity 1 31 0 432 344 36 32 chr3 39520267 39520520 -178516638 + L1M4 LINE L1 4024 4277 -1869 313 274 174 48 chr3 39520701 39521080 -178516078 + L1M4 LINE L1 4601 5027 -1119 32 26 0 0 chr3 39521145 39521184 -178515974 + AT_rich Low_complexity Low_complexity 1 39 0 465 331 35 98 chr3 39522493 39522864 -178514294 + L2 LINE L2 2712 3059 -213 2519 116 5 5 chr3 39522965 39523335 -178513823 + THE1C LTR MaLR 6 375 0 348 305 30 23 chr3 39523339 39523470 -178513688 + L2 LINE L2 3141 3272 0 228 215 120 95 chr3 39523515 39523673 -178513485 + L1ME4a LINE L1 5851 6012 -109 223 346 99 0 chr3 39523865 39523966 -178513192 + MIR SINE MIR 40 150 -112 21 0 0 0 chr3 39525265 39525286 -178511872 + AT_rich Low_complexity Low_complexity 1 21 0 213 39 0 0 chr3 39526123 39526149 -178511009 + (T)n Simple_repeat Simple_repeat 1 26 0 7635 28 0 0 chr3 39526171 39527153 -178510005 - L1PA2 LINE L1 0 6155 5175 13337 27 0 0 chr3 39527155 39529024 -178508134 + L1PA2 LINE L1 3300 5168 -978 1650 206 34 23 chr3 39530347 39530731 -178506427 + MLT1B LTR MaLR 1 388 -2 699 337 55 24 chr3 39530847 39531262 -178505896 - L2 LINE L2 -43 3270 2843 496 327 192 15 chr3 39531370 39532434 -178504724 + L2 LINE L2 1978 3250 -63 643 313 35 10 chr3 39533046 39533356 -178503802 + L1M4 LINE L1 2387 2704 -3442 246 244 85 0 chr3 39533544 39533626 -178503532 + Charlie8 DNA MER1_type 33 121 -2296 2378 214 20 20 chr3 39533627 39534216 -178502942 - L1MA10 LINE L1 -782 5364 4776 * 4745 187 18 9 chr3 39534213 39534998 -178502160 + L1MA10 LINE L1 5376 6172 -162 249 83 0 0 chr3 39534998 39535034 -178502124 + (TAA)n Simple_repeat Simple_repeat 2 37 0 4745 187 18 9 chr3 39535034 39535199 -178501959 + L1MA10 LINE L1 6172 6334 0 246 289 60 60 chr3 39535202 39535368 -178501790 + Charlie8 DNA MER1_type 97 262 -2155 2318 285 35 21 chr3 39535499 39536499 -178500659 - L1ME3A LINE L1 -10 6229 5216 1007 241 127 94 chr3 39536772 39537321 -178499837 - MLT1F1 LTR MaLR 0 567 2 2338 297 60 40 chr3 39537322 39537574 -178499584 - L1ME3A LINE L1 -2038 4177 3932 2460 77 0 0 chr3 39537574 39537884 -178499274 - AluY SINE Alu -1 310 1 2338 297 60 40 chr3 39537884 39539303 -178497855 - L1ME3A LINE L1 -2283 3932 2472 1820 212 45 35 chr3 39539301 39541019 -178496139 - L1MB8 LINE L1 0 6989 5065 * 2271 208 13 51 chr3 39541038 39541563 -178495595 - L1MB8 LINE L1 -6346 513 9 636 314 77 17 chr3 39541575 39542184 -178494974 - L1MEc LINE L1 -3733 2482 1877 1354 191 4 40 chr3 39542210 39542487 -178494671 + AluJo SINE Alu 29 295 -17 568 313 48 33 chr3 39542530 39543048 -178494110 - L1MEc LINE L1 -4641 1755 1230 387 224 24 102 chr3 39543073 39543203 -178493955 - MLT1G LTR MaLR 0 590 419 19169 49 1 2 chr3 39543390 39545838 -178491320 + L1P LINE L1 1176 3622 -2524 646 240 120 35 chr3 39595840 39596205 -178440953 - LTR8A LTR ERV1 -103 609 222 193 258 162 42 chr3 39597023 39597190 -178439968 - L2 LINE L2 -656 2658 2472 316 171 0 79 chr3 39597199 39597275 -178439883 + FLAM_A SINE Alu 64 133 0 400 181 21 43 chr3 39597344 39597438 -178439720 + AluJo SINE Alu 56 147 -165 245 263 237 29 chr3 39597519 39597797 -178439361 - L2 LINE L2 -936 2378 2043 6901 86 24 5 chr3 39598142 39599196 -178437962 + MER61-int LTR ERV1 2095 3168 -2049 2353 96 0 3 chr3 39600006 39600308 -178436850 - AluSx SINE Alu -11 301 1 2512 27 7 3 chr3 39600689 39600987 -178436171 + AluY SINE Alu 1 299 -12 279 203 0 0 chr3 39601036 39601100 -178436058 + CT-rich Low_complexity Low_complexity 4 67 0 186 43 0 0 chr3 39601865 39601888 -178435270 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1036 91 0 0 chr3 39601889 39602021 -178435137 - AluY SINE Alu -179 132 1 32 43 0 0 chr3 39603138 39603184 -178433974 + AT_rich Low_complexity Low_complexity 1 46 0 1713 301 146 22 chr3 39603513 39604360 -178432798 + L2 LINE L2 1957 2908 -406 777 298 109 28 chr3 39604517 39604910 -178432248 + L2 LINE L2 2889 3313 0 282 326 136 20 chr3 39605265 39605412 -178431746 - L2 LINE L2 -6 3266 3103 333 177 94 31 chr3 39605587 39605683 -178431475 - MER94 DNA DNA -9 125 24 278 193 0 12 chr3 39606816 39606899 -178430259 + (TA)n Simple_repeat Simple_repeat 1 82 0 643 186 51 17 chr3 39606902 39607020 -178430138 - FLAM_A SINE Alu -11 122 1 2729 231 56 29 chr3 39607773 39608593 -178428565 + MER21B LTR ERV1 1 842 -21 2496 43 0 7 chr3 39608769 39609069 -178428089 + AluY SINE Alu 1 298 -13 308 303 7 14 chr3 39609122 39609264 -178427894 - L1ME3A LINE L1 -213 5957 5817 318 319 30 48 chr3 39609779 39609860 -178427298 - L1MEd LINE L1 -5939 180 99 240 35 0 0 chr3 39609860 39609889 -178427269 + (CA)n Simple_repeat Simple_repeat 2 30 0 318 319 30 48 chr3 39609889 39609914 -178427244 - L1MEd LINE L1 -6020 99 75 2313 86 6 49 chr3 39609914 39610240 -178426918 - AluSp SINE Alu -1 312 1 318 319 30 48 chr3 39610240 39610298 -178426860 - L1MEd LINE L1 -6044 75 18 21 0 0 0 chr3 39610393 39610414 -178426744 + AT_rich Low_complexity Low_complexity 1 21 0 28 71 0 0 chr3 39610443 39610499 -178426659 + AT_rich Low_complexity Low_complexity 1 56 0 30 52 0 39 chr3 39610785 39610862 -178426296 + AT_rich Low_complexity Low_complexity 1 74 0 2776 177 28 16 chr3 39611285 39611866 -178425292 + L1MB5 LINE L1 5579 6166 -8 2385 58 0 7 chr3 39611868 39612161 -178424997 + AluY SINE Alu 1 291 -20 336 127 0 0 chr3 39612210 39612265 -178424893 - MER103 DNA DNA -52 114 60 1631 142 20 116 chr3 39612505 39612849 -178424309 + AluYb8 SINE Alu 1 311 -7 516 289 65 15 chr3 39613032 39613233 -178423925 - LTR16A LTR ERVL -6 444 234 25 31 0 0 chr3 39615374 39615406 -178421752 + AT_rich Low_complexity Low_complexity 1 32 0 4209 43 8 0 chr3 39615406 39615919 -178421239 - L1PA5 LINE L1 -8 6146 5630 4222 66 12 0 chr3 39615919 39616603 -178420555 + L1M1 LINE L1 4809 5497 -689 752 318 54 8 chr3 39616603 39616845 -178420313 + MIR SINE MIR 8 260 -2 213 295 16 57 chr3 39617010 39617132 -178420026 - L2 LINE L2 -511 2803 2687 196 77 51 0 chr3 39617203 39617242 -178419916 + (TG)n Simple_repeat Simple_repeat 1 41 0 855 320 59 5 chr3 39617296 39617671 -178419487 - MLT1J LTR MaLR -114 397 3 426 304 87 69 chr3 39617741 39617885 -178419273 - L2 LINE L2 -836 2478 2338 2321 73 10 7 chr3 39617885 39618185 -178418973 + AluY SINE Alu 1 301 -10 426 304 87 69 chr3 39618185 39618329 -178418829 - L2 LINE L2 -976 2338 2185 903 236 9 24 chr3 39619050 39619262 -178417896 + MER58A DNA MER1_type 15 223 -1 889 171 5 62 chr3 39620334 39620527 -178416631 + MER3 DNA MER1_type 27 208 -1 541 144 0 31 chr3 39620877 39620974 -178416184 + L1MC1 LINE L1 6231 6324 -9 183 80 0 0 chr3 39620979 39621004 -178416154 + (CAAT)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chr3 39621075 39621096 -178416062 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr3 39621961 39621996 -178415162 + AT_rich Low_complexity Low_complexity 1 35 0 2752 203 24 70 chr3 39622344 39622559 -178414599 + MER72 LTR ERV1 1 224 -498 2089 136 3 0 chr3 39622559 39622861 -178414297 - AluSx SINE Alu -9 303 1 2752 203 24 70 chr3 39622861 39623402 -178413756 + MER72 LTR ERV1 224 722 0 650 186 8 0 chr3 39623712 39623836 -178413322 + MLT1B LTR MaLR 1 125 -265 255 204 0 0 chr3 39623834 39623883 -178413275 + LTR28 LTR ERV1 9 57 -963 * 1781 159 28 60 chr3 39623855 39624290 -178412868 + MER61C LTR ERV1 14 434 0 1229 178 40 8 chr3 39624293 39624546 -178412612 + MLT1B LTR MaLR 127 387 -3 3233 131 103 21 chr3 39625514 39626085 -178411073 + LTR35 LTR ERV1 1 618 0 3249 133 101 21 chr3 39626846 39627418 -178409740 + LTR35 LTR ERV1 1 618 0 1519 207 141 84 chr3 39627499 39628185 -178408973 - MER50 LTR ERV1 0 734 10 2204 173 74 42 chr3 39628410 39628977 -178408181 + MER34C LTR ERV1 1 585 0 396 200 0 0 chr3 39629849 39629914 -178407244 - MER96 DNA MER1_type? 0 175 111 1004 187 28 11 chr3 39629927 39630109 -178407049 - MER58A DNA MER1_type -36 188 4 1949 133 28 0 chr3 39630413 39630699 -178406459 + AluSx SINE Alu 8 301 -11 186 315 161 35 chr3 39630822 39630965 -178406193 + L2 LINE L2 3112 3272 0 436 307 28 6 chr3 39631281 39631460 -178405698 + L1MC5 LINE L1 7744 7926 -35 182 170 0 21 chr3 39631594 39631641 -178405517 + (CA)n Simple_repeat Simple_repeat 2 47 0 225 193 36 12 chr3 39631661 39631744 -178405414 + (TA)n Simple_repeat Simple_repeat 1 85 0 2092 134 3 13 chr3 39631795 39632108 -178405050 - AluSx SINE Alu 0 312 3 460 275 136 42 chr3 39632289 39632525 -178404633 - MIR SINE MIR 0 262 5 399 247 43 0 chr3 39632719 39632812 -178404346 - MLT1I LTR MaLR -26 383 287 587 270 16 82 chr3 39633857 39634175 -178402983 - L1MD2 LINE L1 -13 6346 6050 350 225 0 12 chr3 39634217 39634297 -178402861 - MLT1L LTR MaLR -536 79 1 2152 113 0 0 chr3 39635339 39635654 -178401504 + AluSx SINE Alu 1 315 0 1320 290 53 27 chr3 39636891 39637380 -178399778 + MLT1H1 LTR MaLR 3 589 -1 779 236 133 0 chr3 39637457 39637652 -178399506 - MIR SINE MIR -25 237 17 1877 161 24 0 chr3 39637815 39638113 -178399045 + AluJo SINE Alu 1 305 -7 300 27 0 0 chr3 39638622 39638659 -178398499 + (TG)n Simple_repeat Simple_repeat 2 38 0 251 212 91 40 chr3 39638798 39638897 -178398261 - MLT1L LTR MaLR -4 611 508 191 313 61 61 chr3 39639758 39639857 -178397301 + MER5A DNA MER1_type 14 112 -77 * 228 256 47 101 chr3 39639784 39639913 -178397245 - MER5A DNA MER1_type -22 167 46 2167 73 7 18 chr3 39639915 39640236 -178396922 + AluY SINE Alu 1 318 0 23 0 0 0 chr3 39640336 39640359 -178396799 + AT_rich Low_complexity Low_complexity 1 23 0 434 267 106 81 chr3 39642050 39642372 -178394786 + MER102a DNA MER1_type 1 330 0 1853 253 30 24 chr3 39642767 39643262 -178393896 + LTR31 LTR ERV1 106 603 -16 471 305 14 7 chr3 39643406 39643547 -178393611 + MER97b DNA MER1_type? 2 143 -910 3208 239 21 14 chr3 39643548 39644306 -178392852 + L1MA1 LINE L1 15 777 -6788 * 15449 161 20 11 chr3 39644305 39650233 -178386925 + L1MA1 LINE L1 1731 7716 -5 24 0 0 0 chr3 39650234 39650258 -178386900 + AT_rich Low_complexity Low_complexity 1 24 0 506 197 0 63 chr3 39650258 39650385 -178386773 + MER97a DNA MER1_type? 131 249 -645 462 36 0 0 chr3 39650387 39650443 -178386715 + (TG)n Simple_repeat Simple_repeat 2 57 0 1434 241 45 9 chr3 39650447 39650779 -178386379 - MSTD LTR MaLR -12 384 41 778 266 5 41 chr3 39650782 39651000 -178386158 - MLT-int LTR MaLR -981 754 545 769 263 33 5 chr3 39650993 39651206 -178385952 - MSTD-int LTR MaLR -1515 220 2 * 1865 202 39 21 chr3 39651206 39651588 -178385570 - MSTD LTR MaLR -2 394 6 1341 227 71 6 chr3 39651593 39651946 -178385212 + MER97c DNA MER1_type? 244 619 -471 24 0 0 0 chr3 39652345 39652369 -178384789 + AT_rich Low_complexity Low_complexity 1 24 0 259 266 39 31 chr3 39652382 39652510 -178384648 + MER97c DNA MER1_type? 953 1081 -9 21 57 0 0 chr3 39653147 39653182 -178383976 + AT_rich Low_complexity Low_complexity 1 35 0 209 265 61 20 chr3 39653431 39653529 -178383629 + MIR SINE MIR 96 197 -65 310 252 81 49 chr3 39654549 39654672 -178382486 + MIR SINE MIR 14 140 -122 351 183 0 0 chr3 39654679 39654750 -178382408 + MER72 LTR ERV1 1 71 -651 333 252 81 49 chr3 39654843 39654966 -178382192 + MIR SINE MIR 14 140 -122 2869 200 21 65 chr3 39654973 39655728 -178381430 + MER72 LTR ERV1 1 722 0 1695 274 51 26 chr3 39655780 39656309 -178380849 - MLT1G LTR MaLR 0 590 49 401 297 38 32 chr3 39656420 39656605 -178380553 - MIR SINE MIR -30 232 47 1538 199 40 0 chr3 39656613 39656889 -178380269 + AluJo SINE Alu 1 287 -25 206 32 32 0 chr3 39656898 39656929 -178380229 + (CAA)n Simple_repeat Simple_repeat 1 32 0 376 214 62 27 chr3 39657418 39657530 -178379628 + MLT1L LTR MaLR 165 280 -335 1933 118 42 0 chr3 39657549 39657836 -178379322 - AluSx SINE Alu -12 300 2 1026 248 114 43 chr3 39657984 39658404 -178378754 + LTR16A1 LTR ERVL 8 457 0 1024 221 69 0 chr3 39659001 39659304 -178377854 + MER33 DNA MER1_type 1 324 0 718 254 91 35 chr3 39659406 39659857 -178377301 + Charlie7 DNA MER1_type 675 1223 -1389 367 278 208 43 chr3 39659983 39660238 -178376920 + MLT1J LTR MaLR 92 388 -123 202 150 75 0 chr3 39661233 39661273 -178375885 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 456 255 70 66 chr3 39661730 39661989 -178375169 - MLT1K LTR MaLR 0 588 329 231 281 61 0 chr3 39662555 39662637 -178374521 - MLT1L LTR MaLR -197 418 332 577 140 18 9 chr3 39662658 39662772 -178374386 + L1MC3 LINE L1 7669 7783 -2 262 257 134 89 chr3 39662853 39663032 -178374126 - MLT1L LTR MaLR -361 254 68 222 215 77 0 chr3 39663134 39663199 -178373959 + MIR SINE MIR 191 260 -2 278 315 34 72 chr3 39663343 39663578 -178373580 - L2 LINE L2 -785 2529 2304 204 294 0 0 chr3 39663665 39663716 -178373442 - L2 LINE L2 0 3313 3263 250 211 18 0 chr3 39664068 39664125 -178373033 + (TA)n Simple_repeat Simple_repeat 1 58 0 3450 194 18 14 chr3 39664214 39664979 -178372179 - L1MD1 LINE L1 0 6636 5869 23 0 0 0 chr3 39664983 39665006 -178372152 + AT_rich Low_complexity Low_complexity 1 23 0 2242 64 7 20 chr3 39665009 39665304 -178371854 - AluY SINE Alu -20 291 1 2069 136 60 16 chr3 39665305 39665687 -178371471 - L1MA9 LINE L1 0 6312 5914 1526 164 20 24 chr3 39665688 39665858 -178371300 + L1MA9 LINE L1 5612 5782 -530 387 0 0 0 chr3 39665858 39665901 -178371257 + (CA)n Simple_repeat Simple_repeat 2 44 0 1526 164 20 24 chr3 39665901 39666023 -178371135 + L1MA9 LINE L1 5782 5903 -409 8363 239 74 26 chr3 39666032 39666551 -178370607 - L1MD1 LINE L1 -743 5797 5305 324 48 0 0 chr3 39666551 39666593 -178370565 + (TG)n Simple_repeat Simple_repeat 1 42 0 8363 239 74 26 chr3 39666593 39667318 -178369840 - L1MD1 LINE L1 -1235 5305 4617 360 0 0 0 chr3 39667318 39667358 -178369800 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 8363 239 74 26 chr3 39667358 39667947 -178369211 - L1MD1 LINE L1 -1923 4617 4058 2512 44 14 0 chr3 39667947 39668244 -178368914 - AluY SINE Alu -10 301 1 8363 239 74 26 chr3 39668244 39671985 -178365173 - L1MD1 LINE L1 -2482 4058 17 199 333 30 0 chr3 39672003 39672069 -178365089 - MIR SINE MIR -136 126 59 2355 100 3 0 chr3 39672225 39672534 -178364624 + AluSx SINE Alu 1 310 -2 388 241 12 0 chr3 39673181 39673264 -178363894 + MIR SINE MIR 71 154 -108 233 318 182 0 chr3 39675575 39675685 -178361473 - L2 LINE L2 -6 3266 3137 581 259 129 43 chr3 39675707 39675939 -178361219 + MIR SINE MIR 2 253 -9 569 219 66 141 chr3 39676702 39676881 -178360277 - MLT1H1 LTR MaLR -185 370 179 2059 122 16 3 chr3 39676881 39677184 -178359974 - AluY SINE Alu -4 307 1 569 219 66 141 chr3 39677184 39677202 -178359956 - MLT1H1 LTR MaLR -376 179 161 741 187 8 15 chr3 39677202 39677336 -178359822 - FLAM_A SINE Alu 0 133 1 569 219 66 141 chr3 39677336 39677484 -178359674 - MLT1H1 LTR MaLR -394 161 50 2329 106 0 0 chr3 39677973 39678275 -178358883 - AluSg SINE Alu -8 302 1 563 189 0 0 chr3 39678662 39678757 -178358401 - MER34 LTR ERV1 -447 95 1 567 248 30 8 chr3 39678806 39678939 -178358219 + MIR SINE MIR 21 156 -106 239 236 18 0 chr3 39678939 39678994 -178358164 + L1ME4a LINE L1 5973 6028 -93 1761 179 0 40 chr3 39680107 39680432 -178356726 - AluJo SINE Alu 0 312 1 360 236 73 79 chr3 39681010 39681175 -178355983 - L2 LINE L2 0 3313 3150 277 285 102 77 chr3 39681433 39681707 -178355451 - L2 LINE L2 -481 2833 2553 442 246 98 0 chr3 39682102 39682224 -178354934 + MER94 DNA DNA 1 134 0 352 274 197 17 chr3 39682499 39682616 -178354542 + MER5A DNA MER1_type 46 183 -6 270 220 51 59 chr3 39682625 39682815 -178354343 + MER112 DNA MER1_type 22 248 -12 406 79 26 0 chr3 39684382 39684458 -178352700 + (TA)n Simple_repeat Simple_repeat 2 79 0 2479 48 7 0 chr3 39684529 39684819 -178352339 - AluSc SINE Alu -17 292 1 320 231 50 99 chr3 39684873 39684994 -178352164 + MIR3 SINE MIR 82 196 -12 288 221 74 53 chr3 39686692 39686787 -178350371 - L2 LINE L2 -9 3263 3167 623 290 59 15 chr3 39687123 39687353 -178349805 + MIR SINE MIR 9 256 -6 412 345 36 7 chr3 39687504 39687643 -178349515 + L2 LINE L2 2944 3086 -186 185 139 28 28 chr3 39688085 39688121 -178349037 - L2 LINE L2 -501 2813 2778 226 306 149 0 chr3 39688742 39688863 -178348295 - MIR SINE MIR -4 258 120 189 107 0 0 chr3 39689714 39689742 -178347416 + (T)n Simple_repeat Simple_repeat 1 28 0 1272 275 65 84 chr3 39689814 39690491 -178346667 + MER115 DNA AcHobo 30 693 0 225 94 0 0 chr3 39690685 39690717 -178346441 + (T)n Simple_repeat Simple_repeat 1 32 0 525 322 130 0 chr3 39691201 39691431 -178345727 - MIR SINE MIR -1 261 2 367 228 9 53 chr3 39691807 39691921 -178345237 + MER69 DNA AcHobo 4 112 -1114 * 2229 163 84 46 chr3 39691904 39692329 -178344829 + MER69 DNA AcHobo 1938 2390 -136 1325 209 47 57 chr3 39692329 39692625 -178344533 - AluJo SINE Alu -9 293 1 2229 163 84 46 chr3 39692625 39692759 -178344399 + MER69 DNA AcHobo 2390 2518 -8 219 273 82 45 chr3 39693093 39693203 -178343955 + MIR3 SINE MIR 82 195 -13 22 0 0 0 chr3 39694114 39694136 -178343022 + AT_rich Low_complexity Low_complexity 1 22 0 397 256 192 0 chr3 39694358 39694483 -178342675 + MER5A DNA MER1_type 41 189 0 2339 98 0 25 chr3 39694800 39695118 -178342040 - AluSg SINE Alu 0 310 1 2415 57 0 0 chr3 39696489 39696794 -178340364 + AluY SINE Alu 1 305 0 2194 134 0 0 chr3 39697859 39698164 -178338994 - AluSq SINE Alu -8 305 1 2346 100 0 0 chr3 39699189 39699490 -178337668 + AluSg SINE Alu 7 307 -3 357 280 43 0 chr3 39699732 39699825 -178337333 - MIR SINE MIR -76 186 90 2318 105 0 3 chr3 39700443 39700749 -178336409 + AluSx SINE Alu 1 305 -7 2399 87 0 0 chr3 39700919 39701218 -178335940 + AluSc SINE Alu 1 299 -10 671 246 18 18 chr3 39702551 39702722 -178334436 - MER5B DNA MER1_type -6 172 2 226 328 64 16 chr3 39702723 39702848 -178334310 - MIR3 SINE MIR -48 160 30 721 207 132 0 chr3 39703650 39703824 -178333334 + MER3 DNA MER1_type 1 197 -12 464 268 246 43 chr3 39704189 39704518 -178332640 - L2 LINE L2 -10 3303 2908 1165 172 91 118 chr3 39705148 39705520 -178331638 + MLT1A1 LTR MaLR 1 362 -3 2191 122 0 3 chr3 39705564 39705867 -178331291 - AluSc SINE Alu -7 302 1 219 69 0 0 chr3 39706142 39706171 -178330987 + (T)n Simple_repeat Simple_repeat 1 29 0 278 261 43 22 chr3 39706279 39706371 -178330787 - MIR3 SINE MIR -21 187 94 264 345 124 0 chr3 39707316 39707429 -178329729 - MIR SINE MIR -121 141 15 332 338 71 0 chr3 39707708 39707862 -178329296 + MIR SINE MIR 94 258 -4 677 269 65 37 chr3 39708068 39708362 -178328796 - MER102a DNA MER1_type -6 324 23 204 150 25 0 chr3 39709863 39709903 -178327255 + A-rich Low_complexity Low_complexity 2 42 0 186 171 0 0 chr3 39710402 39710443 -178326715 + (CA)n Simple_repeat Simple_repeat 1 41 0 206 235 0 39 chr3 39710522 39710573 -178326585 + L2 LINE L2 3172 3220 -93 420 20 0 0 chr3 39710680 39710729 -178326429 + (TG)n Simple_repeat Simple_repeat 2 50 0 300 53 0 0 chr3 39710731 39710769 -178326389 - Alu SINE Alu -264 38 1 270 81 0 0 chr3 39711251 39711288 -178325870 + (TG)n Simple_repeat Simple_repeat 2 38 0 2509 75 0 0 chr3 39711311 39711617 -178325541 + AluY SINE Alu 1 306 -5 755 307 110 26 chr3 39711631 39711644 -178325514 - L1MC4a LINE L1 -1884 5924 5914 1128 270 97 41 chr3 39711644 39712137 -178325021 - LTR33 LTR ERVL 0 521 1 755 307 110 26 chr3 39712137 39712615 -178324543 - L1MC4a LINE L1 -1894 5914 5392 1730 157 75 3 chr3 39713764 39714057 -178323101 + MLT2C1 LTR ERVL 1 314 -83 2221 144 12 6 chr3 39714916 39715257 -178321901 + MER2 DNA MER2_type 1 343 -1 260 219 0 14 chr3 39716384 39716457 -178320701 + CT-rich Low_complexity Low_complexity 4 75 0 926 191 17 23 chr3 39716902 39717075 -178320083 + MER5B DNA MER1_type 5 176 -2 423 275 67 8 chr3 39718178 39718298 -178318860 - L2 LINE L2 0 3313 3187 204 232 29 72 chr3 39718562 39718631 -178318527 + L2 LINE L2 3203 3268 -4 2239 121 0 0 chr3 39720016 39720314 -178316844 - AluSx SINE Alu -14 298 1 207 0 0 0 chr3 39720348 39720371 -178316787 + (TC)n Simple_repeat Simple_repeat 1 23 0 895 334 101 5 chr3 39720842 39721276 -178315882 + L3 LINE CR1 1077 1552 -25 502 297 138 25 chr3 39721596 39721993 -178315165 + LTR16A1 LTR ERVL 16 457 0 270 0 0 0 chr3 39722090 39722120 -178315038 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 28 48 0 0 chr3 39722180 39722222 -178314936 + AT_rich Low_complexity Low_complexity 1 42 0 2024 113 0 7 chr3 39722222 39722506 -178314652 - AluSg SINE Alu -28 282 1 387 0 0 0 chr3 39722949 39722992 -178314166 + (CA)n Simple_repeat Simple_repeat 2 44 0 983 175 73 6 chr3 39725234 39725411 -178311747 + MER5A DNA MER1_type 1 189 0 210 174 0 0 chr3 39725922 39725968 -178311190 + (TCCA)n Simple_repeat Simple_repeat 3 48 0 386 307 101 26 chr3 39726137 39726326 -178310832 - L1MC/D LINE L1 -2051 5757 5555 2159 123 10 0 chr3 39726763 39727063 -178310095 - AluSx SINE Alu -9 303 1 2376 110 0 0 chr3 39727780 39728081 -178309077 - AluSx SINE Alu -11 301 1 532 335 20 5 chr3 39728319 39728522 -178308636 - MIR SINE MIR 0 262 57 185 207 0 17 chr3 39728560 39728618 -178308540 + CT-rich Low_complexity Low_complexity 4 60 0 668 292 96 5 chr3 39729483 39729692 -178307466 + MIR SINE MIR 1 228 -34 273 209 116 0 chr3 39730250 39730336 -178306822 + MIR SINE MIR 145 240 -22 459 228 215 0 chr3 39730423 39730572 -178306586 + MER5A DNA MER1_type 9 189 0 201 308 26 13 chr3 39731564 39731642 -178305516 - MIR3 SINE MIR -54 154 76 591 280 102 22 chr3 39731960 39732185 -178304973 + MIR SINE MIR 16 258 -4 945 185 56 0 chr3 39732517 39732695 -178304463 - MER58A DNA MER1_type 0 224 37 189 74 0 0 chr3 39732922 39732949 -178304209 + (TTG)n Simple_repeat Simple_repeat 1 27 0 759 201 52 35 chr3 39734835 39735009 -178302149 - MER5B DNA MER1_type -1 177 1 318 348 93 42 chr3 39735982 39736390 -178300768 + L3 LINE CR1 712 1140 -437 210 374 34 39 chr3 39736505 39736711 -178300447 + L3 LINE CR1 1178 1382 -195 181 298 160 11 chr3 39736819 39736913 -178300245 + L3 LINE CR1 1455 1562 -15 477 230 191 7 chr3 39737436 39737588 -178299570 - MER5A DNA MER1_type -7 182 3 201 214 0 36 chr3 39737730 39737786 -178299372 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 289 247 201 41 chr3 39737787 39738011 -178299147 - L1MC4 LINE L1 -163 7674 7390 455 303 20 50 chr3 39738172 39738370 -178298788 + L1ME3A LINE L1 5962 6153 -17 1653 164 8 4 chr3 39738541 39738803 -178298355 - AluJo SINE Alu -39 273 11 258 288 36 36 chr3 39739896 39740007 -178297151 + MIR SINE MIR 120 230 -32 1118 189 51 18 chr3 39740301 39740700 -178296458 - Charlie4a DNA MER1_type -18 490 7 1443 151 50 47 chr3 39741187 39741465 -178295693 - AluJo SINE Alu -33 279 1 604 260 33 54 chr3 39741519 39741761 -178295397 + MIR SINE MIR 9 245 -17 976 195 73 24 chr3 39742457 39742662 -178294496 - MER58C DNA MER1_type 0 215 1 242 321 9 47 chr3 39742707 39742813 -178294345 - L2 LINE L2 -2 3270 3169 1454 181 35 3 chr3 39743525 39743813 -178293345 + AluSg SINE Alu 1 297 -13 4792 107 10 3 chr3 39743824 39744432 -178292726 - LTR9 LTR ERV1 0 612 1 187 296 0 0 chr3 39744907 39744961 -178292197 + L2 LINE L2 3258 3311 -2 183 240 240 13 chr3 39745596 39745671 -178291487 + L2 LINE L2 3168 3259 -13 234 303 172 14 chr3 39745674 39745819 -178291339 - L2 LINE L2 -5 3267 3100 204 361 76 8 chr3 39745917 39746036 -178291122 - L2 LINE L2 -266 3047 2921 2229 110 7 0 chr3 39749923 39750214 -178286944 - AluSg SINE Alu -17 293 1 2871 242 52 36 chr3 39750231 39751144 -178286014 - L1MC4a LINE L1 0 7808 6882 2468 70 0 3 chr3 39752796 39753098 -178284060 + AluY SINE Alu 2 302 -9 391 223 36 27 chr3 39754138 39754250 -178282908 - MIR SINE MIR -41 221 109 2047 98 0 0 chr3 39754388 39754652 -178282506 + AluSg1 SINE Alu 14 277 -32 370 269 77 104 chr3 39754935 39755195 -178281963 - L2 LINE L2 0 3313 3061 189 0 0 0 chr3 39755690 39755711 -178281447 + (A)n Simple_repeat Simple_repeat 1 21 0 1073 204 133 18 chr3 39756326 39756605 -178280553 - LTR16C LTR ERVL 0 491 181 315 191 59 15 chr3 39757606 39757674 -178279484 + MIR3 SINE MIR 110 180 -28 341 296 72 3 chr3 39757780 39758027 -178279131 + MER5C DNA MER1_type 1 323 -1 1395 260 56 40 chr3 39759942 39760392 -178276766 - LTR16A1 LTR ERVL 0 457 1 284 260 32 84 chr3 39760679 39760833 -178276325 - L2 LINE L2 -8 3305 3160 255 61 0 0 chr3 39761433 39761466 -178275692 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 262 335 55 66 chr3 39761466 39761723 -178275435 - L2 LINE L2 -13 3259 3006 244 185 0 62 chr3 39761845 39761910 -178275248 - MER106A DNA MER1_type 0 236 176 794 184 22 0 chr3 39761916 39762052 -178275106 - FLAM_C SINE Alu -3 140 2 1891 167 50 30 chr3 39762092 39762493 -178274665 - L1MB3 LINE L1 -2 6181 5773 594 190 25 0 chr3 39762495 39762616 -178274542 - MER106A DNA MER1_type -112 124 1 263 250 174 11 chr3 39762626 39762718 -178274440 + L2 LINE L2 3158 3264 -8 2188 161 17 27 chr3 39765172 39765582 -178271576 + L1MC1 LINE L1 5908 6313 -20 246 125 0 0 chr3 39766439 39766487 -178270671 + (TA)n Simple_repeat Simple_repeat 1 48 0 289 241 121 0 chr3 39767287 39767370 -178269788 + Charlie8 DNA MER1_type 46 138 -2279 225 0 0 0 chr3 39768781 39768806 -178268352 + (A)n Simple_repeat Simple_repeat 1 25 0 1292 159 9 40 chr3 39769286 39769512 -178267646 - MER20 DNA MER1_type 0 219 1 460 181 12 0 chr3 39769600 39769683 -178267475 + MIR SINE MIR 61 144 -118 340 293 120 0 chr3 39769983 39770116 -178267042 - MIR SINE MIR -73 189 41 632 238 153 15 chr3 39770687 39770889 -178266269 - MIR SINE MIR -2 260 31 203 147 0 0 chr3 39771781 39771815 -178265343 + (TC)n Simple_repeat Simple_repeat 2 35 0 351 0 0 0 chr3 39771815 39771854 -178265304 + (CA)n Simple_repeat Simple_repeat 2 40 0 700 288 60 26 chr3 39772025 39772258 -178264900 + MIR SINE MIR 6 246 -16 219 269 97 21 chr3 39772751 39772844 -178264314 - MIR SINE MIR -76 186 87 181 404 0 0 chr3 39773060 39773117 -178264041 - L2 LINE L2 -93 3179 3123 674 212 8 8 chr3 39773327 39773459 -178263699 - MLT1D LTR MaLR -1 466 335 734 219 44 44 chr3 39773462 39773645 -178263513 - MLT1D LTR MaLR -322 183 1 203 258 0 97 chr3 39774158 39774220 -178262938 + MIR SINE MIR 43 98 -110 1171 255 94 61 chr3 39774231 39774740 -178262418 - MLT1H1 LTR MaLR -29 526 1 181 277 145 12 chr3 39774743 39774826 -178262332 + MIR3 SINE MIR 103 196 -12 224 163 20 0 chr3 39774995 39775044 -178262114 + (TG)n Simple_repeat Simple_repeat 1 50 0 645 235 86 23 chr3 39776138 39776358 -178260800 + MER46C DNA MER2_type 1 234 -104 294 186 107 0 chr3 39776358 39776431 -178260727 + LTR48B LTR ERV1 1 43 -601 619 217 50 23 chr3 39776441 39776713 -178260445 + LTR48 LTR ERV1 186 619 -168 293 53 26 0 chr3 39776706 39776744 -178260414 - MER4D LTR ERV1 -38 865 827 * 4346 152 25 51 chr3 39776745 39777580 -178259578 - MER4D LTR ERV1 -50 853 41 437 244 47 47 chr3 39777580 39777707 -178259451 + LTR8 LTR ERV1 1 127 -564 * 1820 192 66 70 chr3 39777700 39778200 -178258958 + LTR8A LTR ERV1 230 727 0 785 140 51 73 chr3 39778244 39778422 -178258736 + LTR48 LTR ERV1 602 775 -12 216 0 0 0 chr3 39778519 39778543 -178258615 + (TA)n Simple_repeat Simple_repeat 2 25 0 591 143 45 9 chr3 39778590 39778702 -178258456 - MER34B LTR ERV1 -3 562 447 441 223 77 46 chr3 39778706 39778836 -178258322 + LTR39 LTR ERV1 565 698 -85 * 2291 140 71 15 chr3 39778833 39779241 -178257917 - MER34C LTR ERV1 -123 462 32 4169 193 38 7 chr3 39779969 39780724 -178256434 + LTR39 LTR ERV1 1 779 -4 3431 114 47 8 chr3 39780724 39781213 -178255945 + MER9 LTR ERVK 1 511 0 2567 152 28 21 chr3 39781504 39781933 -178255225 + MSTB1 LTR MaLR 1 432 0 1322 182 89 34 chr3 39782889 39783308 -178253850 + MER39B LTR ERV1 1 553 -154 1888 198 77 81 chr3 39783308 39783864 -178253294 - MLT2B3 LTR ERVL 0 554 1 1322 182 89 34 chr3 39783864 39784029 -178253129 + MER39B LTR ERV1 553 707 0 243 243 167 33 chr3 39784085 39784271 -178252887 - L1M4 LINE L1 -448 5736 5523 1370 237 116 15 chr3 39784453 39784858 -178252300 - MER39 LTR ERV1 0 707 262 460 212 73 58 chr3 39784832 39784969 -178252189 - MER39 LTR ERV1 -568 139 1 * 1348 208 39 48 chr3 39785064 39785420 -178251738 - MER39 LTR ERV1 -30 677 325 24 32 0 0 chr3 39786087 39786118 -178251040 + AT_rich Low_complexity Low_complexity 1 31 0 306 290 65 18 chr3 39786379 39786593 -178250565 - L1ME1 LINE L1 -233 5929 5705 492 195 25 17 chr3 39786898 39787016 -178250142 + L1ME LINE L1 4639 4757 -1389 225 146 42 0 chr3 39787021 39787069 -178250089 + L1ME LINE L1 4811 4860 -1286 869 155 5 77 chr3 39787105 39787160 -178249998 - MER67C LTR ERV1 -20 690 633 2018 139 3 13 chr3 39787160 39787469 -178249689 + AluSx SINE Alu 1 306 -6 869 155 5 77 chr3 39787469 39787620 -178249538 - MER67C LTR ERV1 -77 633 499 862 234 88 36 chr3 39787621 39787985 -178249173 - MER67C LTR ERV1 -324 386 4 1397 210 56 17 chr3 39787994 39788540 -178248618 + L1ME LINE L1 4869 5437 -725 6558 183 37 20 chr3 39788548 39788763 -178248395 + L1M4c LINE L1 21 231 -6153 2178 147 0 12 chr3 39788763 39789104 -178248054 + MER1B DNA MER1_type 1 337 0 6558 183 37 20 chr3 39789104 39790219 -178246939 + L1M4c LINE L1 231 1373 -5011 1381 219 121 14 chr3 39790216 39790430 -178246728 + L1MD3 LINE L1 6887 7077 -918 * 2198 102 0 20 chr3 39790430 39790735 -178246423 + AluSg SINE Alu 1 299 -11 1381 219 121 14 chr3 39790735 39790876 -178246282 + L1MD3 LINE L1 7077 7280 -715 340 197 14 0 chr3 39790877 39790948 -178246210 + MLT1F1 LTR MaLR 3 74 -493 672 161 0 8 chr3 39790951 39791069 -178246089 + L1MD3 LINE L1 7374 7490 -505 2282 229 16 63 chr3 39791090 39791710 -178245448 - L1MEc LINE L1 -5754 642 52 23 54 0 0 chr3 39791855 39791892 -178245266 + AT_rich Low_complexity Low_complexity 1 37 0 2122 86 0 4 chr3 39794620 39794887 -178242271 + AluY SINE Alu 1 266 -45 23 33 0 0 chr3 39795165 39795195 -178241963 + AT_rich Low_complexity Low_complexity 1 30 0 229 350 29 44 chr3 39795286 39795423 -178241735 - L2 LINE L2 -213 3059 2925 266 183 0 99 chr3 39795672 39795743 -178241415 + MER110A LTR ERV1 102 165 -303 574 271 127 0 chr3 39795795 39796016 -178241142 + MER110 LTR ERV1 148 396 -95 990 298 57 51 chr3 39796102 39796608 -178240550 - L2 LINE L2 -554 2760 2252 783 295 45 8 chr3 39796854 39797098 -178240060 + MIR SINE MIR 7 259 -3 233 254 31 77 chr3 39798229 39798359 -178238799 + MLT1J LTR MaLR 238 361 -150 960 285 100 21 chr3 39798442 39798831 -178238327 + LTR16C LTR ERVL 71 490 -1 2429 299 70 17 chr3 39799168 39800484 -178236674 + L2 LINE L2 1921 3313 0 216 0 0 0 chr3 39801020 39801044 -178236114 + (CA)n Simple_repeat Simple_repeat 2 25 0 318 253 22 22 chr3 39801603 39801694 -178235464 - L1MC4 LINE L1 -1334 6708 6618 302 311 0 19 chr3 39801620 39801726 -178235432 + L1MC4 LINE L1 6615 6718 -1324 * 306 125 0 0 chr3 39801930 39801978 -178235180 + (TA)n Simple_repeat Simple_repeat 1 48 0 1196 147 5 11 chr3 39802247 39802437 -178234721 - MER5A DNA MER1_type 0 189 1 407 286 112 0 chr3 39803088 39803249 -178233909 - MIR SINE MIR 0 262 84 24 67 0 0 chr3 39805213 39805258 -178231900 + AT_rich Low_complexity Low_complexity 1 45 0 210 368 0 0 chr3 39805353 39805429 -178231729 + (TG)n Simple_repeat Simple_repeat 2 77 0 1590 173 66 0 chr3 39807313 39807585 -178229573 + AluSx SINE Alu 1 290 -22 940 178 157 4 chr3 39807599 39807835 -178229323 - MER5C DNA MER1_type -1 323 52 587 81 12 0 chr3 39808115 39808201 -178228957 + (TTCC)n Simple_repeat Simple_repeat 2 88 0 208 156 0 22 chr3 39808206 39808251 -178228907 + CT-rich Low_complexity Low_complexity 2 45 0 1365 203 81 12 chr3 39809890 39810225 -178226933 + L1ME1 LINE L1 5686 6043 -123 455 262 33 0 chr3 39810666 39810788 -178226370 - MER94 DNA DNA 0 134 9 334 271 119 13 chr3 39810854 39811005 -178226153 + MIR SINE MIR 81 247 -15 24 53 0 0 chr3 39811012 39811050 -178226108 + AT_rich Low_complexity Low_complexity 1 38 0 219 330 37 18 chr3 39811637 39811746 -178225412 + MER5A DNA MER1_type 69 179 -10 402 321 52 24 chr3 39812754 39812966 -178224192 + MER20 DNA MER1_type 1 218 -1 1136 209 40 8 chr3 39815270 39815523 -178221635 - MLT1B LTR MaLR -3 387 127 1929 159 28 60 chr3 39815526 39815961 -178221197 - MER61C LTR ERV1 0 434 14 275 226 0 0 chr3 39815933 39815986 -178221172 - LTR28 LTR ERV1 -963 57 5 * 690 186 8 0 chr3 39815980 39816104 -178221054 - MLT1B LTR MaLR -265 125 1 2767 203 24 70 chr3 39816414 39816955 -178220203 - MER72 LTR ERV1 0 722 224 2063 136 3 0 chr3 39816955 39817257 -178219901 + AluSx SINE Alu 1 303 -9 2767 203 24 70 chr3 39817257 39817472 -178219686 - MER72 LTR ERV1 -498 224 1 22 0 0 0 chr3 39817773 39817795 -178219363 + AT_rich Low_complexity Low_complexity 1 22 0 268 231 5 22 chr3 39819148 39819282 -178217876 - L1M LINE L1 -765 5381 5255 505 131 46 19 chr3 39819350 39819609 -178217549 + (TA)n Simple_repeat Simple_repeat 1 266 0 28 0 0 0 chr3 39819632 39819660 -178217498 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr3 39819660 39819689 -178217469 + (TG)n Simple_repeat Simple_repeat 2 30 0 388 337 124 8 chr3 39819756 39820023 -178217135 - L1 LINE L1 -1112 5034 4737 1397 249 159 25 chr3 39820235 39820744 -178216414 + MLT1G LTR MaLR 14 590 0 25 0 0 0 chr3 39820824 39820849 -178216309 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr3 39822195 39822216 -178214942 + AT_rich Low_complexity Low_complexity 1 21 0 785 216 59 40 chr3 39822309 39822531 -178214627 + MLT1I LTR MaLR 137 362 -47 1695 170 0 11 chr3 39822923 39823200 -178213958 + AluJo SINE Alu 26 299 -13 846 200 53 6 chr3 39823200 39823370 -178213788 - MER58A DNA MER1_type -29 195 18 229 282 200 9 chr3 39823511 39823621 -178213537 + MIR SINE MIR 119 249 -13 258 193 0 0 chr3 39824396 39824453 -178212705 + C-rich Low_complexity Low_complexity 5 61 0 1626 172 19 16 chr3 39824453 39824761 -178212397 - AluSx SINE Alu -3 309 1 210 370 7 44 chr3 39824776 39824911 -178212247 + MER5A DNA MER1_type 56 185 -4 194 271 71 14 chr3 39825644 39825714 -178211444 + L2 LINE L2 108 181 -3133 195 42 0 0 chr3 39826076 39826100 -178211058 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 328 250 23 0 chr3 39828730 39828818 -178208340 - MER94 DNA DNA -41 93 4 271 240 55 144 chr3 39829647 39829959 -178207199 + MER51C LTR ERV1 329 612 -28 26 0 0 0 chr3 39831453 39831479 -178205679 + AT_rich Low_complexity Low_complexity 1 26 0 299 237 0 0 chr3 39834164 39834223 -178202935 + L2 LINE L2 3255 3313 0 261 329 86 14 chr3 39834722 39834862 -178202296 + MIR SINE MIR 98 247 -15 1195 240 55 44 chr3 39834886 39835270 -178201888 + MLT1H LTR MaLR 1 388 -161 231 281 170 33 chr3 39836400 39836553 -178200605 - MIR SINE MIR -10 252 79 361 194 0 74 chr3 39836982 39837090 -178200068 + MIR SINE MIR 152 251 -11 201 62 94 0 chr3 39840374 39840406 -178196752 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 3234 108 98 10 chr3 39840947 39841541 -178195617 - L1MA1 LINE L1 0 6302 5657 673 163 78 114 chr3 39841625 39841685 -178195473 - Tigger5 DNA MER2_type -3 2320 2259 2085 101 0 18 chr3 39841685 39841971 -178195187 + AluY SINE Alu 1 281 -30 673 163 78 114 chr3 39841971 39842155 -178195003 - Tigger5 DNA MER2_type -64 2259 2085 251 182 73 18 chr3 39844155 39844210 -178192948 + L2 LINE L2 3244 3301 -12 811 181 21 0 chr3 39845112 39845256 -178191902 + MER45A DNA AcHobo 1 147 -31 730 244 29 6 chr3 39845873 39846045 -178191113 + MER45A DNA AcHobo 1 176 -2 348 357 61 24 chr3 39846051 39846264 -178190894 - MIR SINE MIR -40 222 2 676 261 5 48 chr3 39846566 39846773 -178190385 - MIR SINE MIR 0 262 65 312 296 108 17 chr3 39846848 39847024 -178190134 + L1ME LINE L1 4640 4831 -1315 306 333 63 48 chr3 39847076 39847328 -178189830 + L1ME LINE L1 4918 5173 -973 326 201 132 42 chr3 39847755 39847899 -178189259 + L1ME LINE L1 5624 5780 -341 255 238 16 16 chr3 39848102 39848165 -178188993 + GA-rich Low_complexity Low_complexity 2 64 0 637 238 21 96 chr3 39849515 39849796 -178187362 + MER102a DNA MER1_type 68 327 -3 2102 126 0 3 chr3 39852161 39852454 -178184704 + AluSg SINE Alu 1 292 -18 444 286 196 8 chr3 39853233 39853488 -178183670 - L1ME LINE L1 -335 5786 5484 1517 305 86 19 chr3 39853657 39854391 -178182767 + MER20B DNA MER1_type 1 783 0 1800 121 53 7 chr3 39855381 39855662 -178181496 + AluSx SINE Alu 1 294 -18 363 305 140 74 chr3 39856349 39856743 -178180415 + L2 LINE L2 2842 3261 -11 183 313 30 121 chr3 39858383 39858549 -178178609 - MER5A DNA MER1_type -4 185 35 315 65 0 0 chr3 39859125 39859171 -178177987 - MADE1 DNA Mariner -34 46 1 785 265 44 116 chr3 39859314 39860136 -178177022 + LTR41 LTR ERVL 1 763 -10 285 336 50 17 chr3 39860840 39860959 -178176199 + L3 LINE CR1 255 377 -1200 198 293 53 13 chr3 39861021 39861096 -178176062 + L3 LINE CR1 804 881 -696 407 294 131 32 chr3 39861179 39861400 -178175758 + MIR SINE MIR 20 262 0 276 348 107 0 chr3 39861442 39861554 -178175604 + L3 LINE CR1 1028 1151 -426 536 331 163 27 chr3 39861633 39862486 -178174672 - L2 LINE L2 -443 2871 1903 449 283 113 25 chr3 39862577 39862736 -178174422 + L3 LINE CR1 1385 1557 -20 221 136 0 45 chr3 39863102 39863146 -178174012 + (CATATA)n Simple_repeat Simple_repeat 1 42 0 525 290 91 100 chr3 39863929 39864668 -178172490 + L2 LINE L2 2590 3309 -4 2115 113 36 0 chr3 39864683 39864984 -178172174 - AluSp SINE Alu -1 312 1 216 0 0 0 chr3 39866091 39866115 -178171043 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1780 115 59 0 chr3 39866230 39866516 -178170642 + L1PA10 LINE L1 5866 6168 0 288 307 14 7 chr3 39866772 39866912 -178170246 + L1MC4a LINE L1 5590 5730 -391 241 259 0 0 chr3 39867465 39867550 -178169608 + L1M2 LINE L1 5348 5432 -868 12373 142 60 11 chr3 39867555 39869854 -178167304 - Tigger1 DNA MER2_type -1 2417 6 303 295 121 36 chr3 39870117 39870283 -178166875 + L1MC4a LINE L1 5721 5900 -1908 1098 161 21 5 chr3 39870988 39871181 -178165977 - MER1B DNA MER1_type -101 196 1 236 250 0 56 chr3 39871366 39871438 -178165720 - L2 LINE L2 -4 3309 3242 253 371 95 53 chr3 39871580 39871863 -178165295 - L2 LINE L2 -1 3271 2977 223 331 22 63 chr3 39872047 39872223 -178164935 + MIR SINE MIR 25 197 -56 2018 117 0 11 chr3 39872847 39873130 -178164028 + AluSx SINE Alu 1 280 -32 229 338 13 0 chr3 39873222 39873299 -178163859 + GA-rich Low_complexity Low_complexity 5 82 0 2220 107 0 7 chr3 39873314 39873612 -178163546 + AluSx SINE Alu 1 296 -16 274 190 0 0 chr3 39875483 39875541 -178161617 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 505 235 28 116 chr3 39876675 39876917 -178160241 + MER112 DNA MER1_type 1 216 -44 315 261 56 67 chr3 39876917 39877097 -178160061 + MER5B DNA MER1_type 1 178 0 505 235 28 116 chr3 39877097 39877139 -178160019 + MER112 DNA MER1_type 216 260 0 2140 153 49 0 chr3 39877460 39877807 -178159351 - THE1B LTR MaLR 0 364 1 231 339 9 18 chr3 39878014 39878126 -178159032 + GA-rich Low_complexity Low_complexity 1 111 0 380 338 55 46 chr3 39879198 39879435 -178157723 - MIR SINE MIR -11 251 13 916 233 40 0 chr3 39879575 39879777 -178157381 - MER58A DNA MER1_type -12 212 3 1653 122 0 13 chr3 39879909 39880138 -178157020 + AluSg/x SINE Alu 73 298 -14 619 289 16 11 chr3 39881017 39881207 -178155951 + MIR SINE MIR 14 204 -58 254 268 33 98 chr3 39881355 39881508 -178155650 - L2 LINE L2 -189 3083 2941 2274 110 10 0 chr3 39881692 39882001 -178155157 - AluSx SINE Alu 0 312 1 2493 122 8 3 chr3 39882867 39883229 -178153929 + THE1B LTR MaLR 1 364 0 1848 174 3 14 chr3 39883453 39883747 -178153411 + AluJb SINE Alu 1 291 -21 393 287 77 35 chr3 39883857 39884000 -178153158 - MLT1L LTR MaLR -221 394 246 290 206 96 0 chr3 39884084 39884157 -178153001 - MLT1L LTR MaLR -531 84 5 492 242 0 23 chr3 39884166 39884294 -178152864 + MER103 DNA DNA 42 166 0 484 254 159 48 chr3 39886529 39886718 -178150440 - MER63A DNA MER1_type 0 210 1 606 360 100 18 chr3 39887496 39887996 -178149162 + MLT1K LTR MaLR 38 578 -10 482 328 27 55 chr3 39888094 39888387 -178148771 + MLT1H LTR MaLR 38 322 -227 668 270 144 0 chr3 39888574 39888788 -178148370 - MIR SINE MIR 0 262 25 216 61 20 41 chr3 39888799 39888848 -178148310 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 26 0 0 0 chr3 39888969 39888995 -178148163 + AT_rich Low_complexity Low_complexity 1 26 0 2076 112 25 34 chr3 39889401 39889759 -178147399 - THE1A LTR MaLR 0 355 1 11120 96 30 4 chr3 39889759 39891298 -178145860 - THE1A-int LTR MaLR 0 1580 1 2195 109 26 11 chr3 39891300 39891648 -178145510 - THE1A LTR MaLR -2 353 1 211 286 0 0 chr3 39891838 39891887 -178145271 + L2 LINE L2 3219 3267 -5 411 68 0 0 chr3 39891955 39892014 -178145144 + (CA)n Simple_repeat Simple_repeat 2 60 0 249 33 0 0 chr3 39892013 39892043 -178145115 + (GA)n Simple_repeat Simple_repeat 2 31 0 * 1425 214 30 3 chr3 39893188 39893483 -178143675 + AluJb SINE Alu 1 303 -9 327 264 43 68 chr3 39894466 39894629 -178142529 - MLT1K LTR MaLR -52 536 378 769 182 43 32 chr3 39895970 39896157 -178141001 - MER53 DNA DNA 0 189 1 23 0 0 0 chr3 39897133 39897156 -178140002 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr3 39897965 39897997 -178139161 + AT_rich Low_complexity Low_complexity 1 32 0 5639 30 0 10 chr3 39898065 39898743 -178138415 + L1PA3 LINE L1 5485 6155 0 402 216 131 57 chr3 39898761 39898937 -178138221 + L1MC5 LINE L1 7725 7913 -48 612 299 99 30 chr3 39901269 39901874 -178135284 + L1MEd LINE L1 970 1676 -4634 874 260 86 35 chr3 39901884 39902338 -178134820 + L1ME3A LINE L1 5679 6155 -15 1804 124 4 7 chr3 39903058 39903333 -178133825 + L1PA8 LINE L1 5879 6152 -20 397 264 82 89 chr3 39907159 39907439 -178129719 - L2 LINE L2 -52 3261 2984 1101 221 213 22 chr3 39907499 39907856 -178129302 + MER39 LTR ERV1 260 684 -23 1114 355 101 29 chr3 39907857 39908778 -178128380 + L2 LINE L2 1980 2966 -348 262 318 83 32 chr3 39908828 39909045 -178128113 - MLT1L LTR MaLR -10 605 378 290 273 45 64 chr3 39909322 39909432 -178127726 + L2 LINE L2 3171 3278 -35 211 277 36 24 chr3 39910043 39910126 -178127032 + MIR SINE MIR 42 125 -83 190 267 0 0 chr3 39911963 39912008 -178125150 - L2 LINE L2 -89 3224 3180 282 327 115 19 chr3 39912441 39912597 -178124561 - MIR SINE MIR -43 219 49 285 272 62 0 chr3 39912960 39913041 -178124117 + MER96 DNA MER1_type? 5 90 -85 206 304 0 14 chr3 39913923 39913992 -178123166 - MIR SINE MIR 0 262 195 27 29 0 0 chr3 39915642 39915676 -178121482 + AT_rich Low_complexity Low_complexity 1 34 0 344 280 140 20 chr3 39915945 39916095 -178121063 - MIR3 SINE MIR -6 202 35 1329 222 64 124 chr3 39918857 39919877 -178117281 + L1MC5 LINE L1 6946 7903 -58 243 200 20 0 chr3 39919942 39919992 -178117166 + GA-rich Low_complexity Low_complexity 3 53 0 189 0 0 0 chr3 39920223 39920244 -178116914 + (A)n Simple_repeat Simple_repeat 1 21 0 2095 114 0 7 chr3 39920659 39920956 -178116202 - AluSg SINE Alu -15 295 1 678 289 22 26 chr3 39922013 39922241 -178114917 + MIR SINE MIR 7 233 -29 975 274 31 42 chr3 39926252 39926609 -178110549 + MLT1H LTR MaLR 2 354 -195 553 238 40 8 chr3 39926754 39926880 -178110278 - MIR SINE MIR -122 140 11 207 0 0 0 chr3 39926937 39926960 -178110198 + (TG)n Simple_repeat Simple_repeat 2 24 0 1110 295 45 26 chr3 39928894 39929318 -178107840 + LTR16A LTR ERVL 19 450 0 2135 125 3 0 chr3 39929633 39929921 -178107237 + AluSg1 SINE Alu 1 289 -20 965 330 127 43 chr3 39930272 39930613 -178106545 + L2 LINE L2 1783 2094 -1219 610 276 0 17 chr3 39930613 39930794 -178106364 - MER5B DNA MER1_type 0 178 1 965 330 127 43 chr3 39930794 39931815 -178105343 + L2 LINE L2 2094 3264 -49 1201 242 47 22 chr3 39932199 39932563 -178104595 + L1ME3 LINE L1 5790 6162 0 193 417 18 41 chr3 39934603 39934821 -178102337 - L2 LINE L2 -84 3188 2976 1243 283 73 28 chr3 39934987 39935631 -178101527 + L2 LINE L2 2636 3313 0 1113 316 147 27 chr3 39935639 39936642 -178100516 - L2 LINE L2 -482 2832 1710 863 214 83 42 chr3 39936734 39937070 -178100088 + L1ME1 LINE L1 5807 6156 -10 229 405 30 15 chr3 39937668 39937799 -178099359 + L2 LINE L2 3139 3271 -1 21 0 0 0 chr3 39937883 39937904 -178099254 + AT_rich Low_complexity Low_complexity 1 21 0 758 240 120 14 chr3 39938184 39938392 -178098766 + MIR SINE MIR 13 242 -20 261 118 0 0 chr3 39940428 39940479 -178096679 + (CA)n Simple_repeat Simple_repeat 1 51 0 844 280 64 57 chr3 39942167 39942685 -178094473 + L2 LINE L2 2521 3165 -148 198 0 0 0 chr3 39942685 39942707 -178094451 + (TA)n Simple_repeat Simple_repeat 2 23 0 844 280 64 57 chr3 39942707 39942857 -178094301 + L2 LINE L2 3165 3312 -1 317 224 26 0 chr3 39943458 39943534 -178093624 + MIR SINE MIR 180 257 -5 1920 157 0 3 chr3 39943578 39943864 -178093294 + AluSx SINE Alu 3 287 -25 295 277 64 0 chr3 39944395 39944489 -178092669 + MIR SINE MIR 42 141 -67 336 102 0 0 chr3 39944821 39944870 -178092288 + (TA)n Simple_repeat Simple_repeat 1 49 0 594 177 126 69 chr3 39944876 39945051 -178092107 - MIR SINE MIR -20 242 58 310 328 228 16 chr3 39945567 39945817 -178091341 - L3 LINE CR1 -289 1288 986 489 295 106 32 chr3 39945833 39946050 -178091108 + MIR SINE MIR 28 260 -2 290 286 75 53 chr3 39946044 39946177 -178090981 - L3 LINE CR1 -577 1000 865 * 21 0 0 0 chr3 39946420 39946441 -178090717 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 39947023 39947044 -178090114 + AT_rich Low_complexity Low_complexity 1 21 0 224 246 31 15 chr3 39947355 39947420 -178089738 - L2 LINE L2 -188 3084 3019 1305 316 92 27 chr3 39947430 39948311 -178088847 - L2 LINE L2 0 3313 2374 342 0 0 0 chr3 39948443 39948481 -178088677 + (TG)n Simple_repeat Simple_repeat 2 39 0 200 283 172 29 chr3 39948524 39948768 -178088390 - L2 LINE L2 -446 2868 2590 909 250 22 71 chr3 39950610 39950878 -178086280 - MIR SINE MIR 0 262 8 242 330 21 0 chr3 39952085 39952182 -178084976 - MIR SINE MIR 0 262 164 465 287 112 53 chr3 39952331 39952725 -178084433 - MLT1H LTR MaLR -125 424 8 286 296 112 0 chr3 39953141 39953239 -178083919 + MLT2E LTR ERVL 120 228 -400 736 265 31 14 chr3 39953294 39953517 -178083641 + MLT2E LTR ERVL 362 588 -40 646 299 27 5 chr3 39953527 39953714 -178083444 - MIR SINE MIR -61 201 11 353 222 0 0 chr3 39953775 39953847 -178083311 + MER63 DNA MER1_type 672 743 -93 768 313 25 28 chr3 39954009 39954329 -178082829 + LTR16C LTR ERVL 53 371 -120 447 262 73 68 chr3 39954401 39954607 -178082551 - MIR SINE MIR -3 259 53 3077 221 46 10 chr3 39955568 39957074 -178080084 - L1MB2 LINE L1 -88 6083 4526 28 29 0 0 chr3 39957877 39957912 -178079246 + AT_rich Low_complexity Low_complexity 1 35 0 1151 114 29 48 chr3 39957949 39958048 -178079110 - MER2 DNA MER2_type -139 206 107 2532 108 11 3 chr3 39958048 39958409 -178078749 + THE1B LTR MaLR 1 364 0 1151 114 29 48 chr3 39958409 39958519 -178078639 - MER2 DNA MER2_type -238 107 1 242 239 68 17 chr3 39958522 39958639 -178078519 + L1MB8 LINE L1 6056 6178 0 252 216 144 45 chr3 39960317 39960428 -178076730 - MIR SINE MIR -21 241 120 49 18 0 0 chr3 39961218 39961274 -178075884 + AT_rich Low_complexity Low_complexity 1 56 0 742 205 0 0 chr3 39961274 39961401 -178075757 - AluJb SINE Alu -185 127 1 348 219 56 124 chr3 39962442 39962620 -178074538 - MIR SINE MIR -45 217 52 2318 138 60 29 chr3 39962736 39963149 -178074009 + MSTC LTR MaLR 1 426 -2 235 182 164 36 chr3 39963190 39963300 -178073858 + L1MC5 LINE L1 7407 7530 -431 1180 208 14 1 chr3 39963388 39963700 -178073458 + MER2 DNA MER2_type 1 345 0 286 225 58 75 chr3 39963708 39963828 -178073330 + L1ME3 LINE L1 5965 6082 -80 1248 121 261 75 chr3 39964523 39964830 -178072328 - THE1B LTR MaLR 0 364 1 401 273 94 47 chr3 39965760 39965888 -178071270 - L2 LINE L2 -5 3267 3134 340 250 172 0 chr3 39966354 39966470 -178070688 - MIR SINE MIR -25 237 102 270 0 0 0 chr3 39966527 39966557 -178070601 + (TTCC)n Simple_repeat Simple_repeat 4 33 0 24 0 0 0 chr3 39967139 39967163 -178069995 + AT_rich Low_complexity Low_complexity 1 24 0 2240 95 7 7 chr3 39968345 39968650 -178068508 - AluSx SINE Alu -7 305 1 1627 133 101 3 chr3 39968757 39969073 -178068085 - L1MA6 LINE L1 -2 6298 5952 288 263 11 53 chr3 39969815 39969910 -178067248 - MIR SINE MIR -12 250 160 198 0 0 0 chr3 39970742 39970764 -178066394 + (TG)n Simple_repeat Simple_repeat 1 22 0 5962 138 60 41 chr3 39971505 39972023 -178065135 - Tigger3b DNA MER2_type -1797 1231 725 2257 76 7 10 chr3 39972023 39972312 -178064846 + AluY SINE Alu 1 288 -23 5962 138 60 41 chr3 39972312 39973000 -178064158 - Tigger3b DNA MER2_type -2303 725 1 456 340 98 9 chr3 39973567 39973782 -178063376 - MIR SINE MIR -27 235 2 2229 113 0 0 chr3 39973985 39974277 -178062881 + AluSc SINE Alu 1 292 -17 495 0 0 0 chr3 39975297 39975352 -178061806 + (TG)n Simple_repeat Simple_repeat 1 55 0 250 254 32 0 chr3 39975368 39975431 -178061727 - MLT1L LTR MaLR -550 65 1 575 95 0 21 chr3 39976118 39976213 -178060945 - L1PA7 LINE L1 0 6154 6062 242 313 203 2 chr3 39976476 39976669 -178060489 - MIR SINE MIR -25 237 5 196 293 241 0 chr3 39976852 39976968 -178060190 - L2 LINE L2 -3 3269 3126 454 331 128 3 chr3 39977086 39977382 -178059776 - MLT1I LTR MaLR -7 402 70 649 225 75 40 chr3 39977538 39977738 -178059420 + MIR SINE MIR 47 253 -9 259 299 127 64 chr3 39977748 39978214 -178058944 - L2 LINE L2 -275 3038 2547 363 283 18 9 chr3 39978904 39979017 -178058141 + MER5C DNA MER1_type 4 117 -207 919 196 50 0 chr3 39979017 39979216 -178057942 - MER20 DNA MER1_type -10 209 1 375 177 257 17 chr3 39979217 39979392 -178057766 + MER5C DNA MER1_type 108 324 0 453 259 125 28 chr3 39979739 39979955 -178057203 + Charlie8 DNA MER1_type 2 238 -2179 329 328 165 53 chr3 39980535 39981803 -178055355 - L2 LINE L2 -15 3257 1781 3801 122 51 8 chr3 39981803 39982412 -178054746 - MER41B LTR ERV1 0 635 1 329 328 165 53 chr3 39982412 39982605 -178054553 - L2 LINE L2 -1491 1781 1611 230 309 27 40 chr3 39982732 39982881 -178054277 + MER5A DNA MER1_type 7 153 -36 946 256 14 5 chr3 39982920 39983139 -178054019 + MIR SINE MIR 31 251 -11 283 331 22 36 chr3 39983173 39983312 -178053846 - MER5A DNA MER1_type -1 188 52 2462 71 0 0 chr3 39983536 39983830 -178053328 - AluY SINE Alu -17 294 1 497 288 79 22 chr3 39984576 39984805 -178052353 + Charlie8 DNA MER1_type 3 244 -2173 522 269 54 0 chr3 39984809 39984939 -178052219 + MIR SINE MIR 104 240 -22 235 235 62 62 chr3 39984936 39985017 -178052141 + Charlie8 DNA MER1_type 1348 1428 -989 * 1178 293 65 18 chr3 39985500 39985992 -178051166 + LTR33 LTR ERVL 5 519 -2 747 224 36 49 chr3 39986448 39986671 -178050487 + MER33 DNA MER1_type 8 227 -97 337 316 65 0 chr3 39987405 39987544 -178049614 + MIR SINE MIR 105 252 -10 2119 189 64 35 chr3 39987798 39988280 -178048878 - MLT1D LTR MaLR 0 505 10 231 209 0 0 chr3 39988470 39988513 -178048645 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 293 280 152 56 chr3 39988514 39988639 -178048519 - L2 LINE L2 0 3272 3136 434 186 9 200 chr3 39988844 39988985 -178048173 - MER5B DNA MER1_type 0 178 12 2511 62 13 0 chr3 39988985 39989291 -178047867 - AluY SINE Alu -1 310 1 434 186 9 200 chr3 39989291 39989328 -178047830 - MER5B DNA MER1_type -166 12 46 1724 176 7 13 chr3 39989328 39989634 -178047524 - AluJb SINE Alu -8 304 1 434 186 9 200 chr3 39989634 39989674 -178047484 - MER5B DNA MER1_type -131 47 1 421 236 76 37 chr3 39989991 39990180 -178046978 + MIR SINE MIR 49 241 -21 276 263 8 4 chr3 39990307 39990412 -178046746 + MLT1H LTR MaLR 24 169 -380 2067 165 52 10 chr3 39990414 39990821 -178046337 + L1MA3 LINE L1 5869 6292 -13 598 271 99 73 chr3 39990841 39991266 -178045892 + MLT1H1 LTR MaLR 114 549 -6 331 248 136 30 chr3 39991363 39991561 -178045597 - MLT1F LTR MaLR -323 219 1 533 142 61 101 chr3 39992158 39992306 -178044852 - L1MC2 LINE L1 -9 6335 6194 999 163 0 6 chr3 39992310 39992470 -178044688 + AluJo SINE Alu 23 181 -131 1017 158 0 0 chr3 39992478 39992630 -178044528 + AluJo SINE Alu 157 308 -4 751 236 55 10 chr3 39992635 39992834 -178044324 - L1MC2 LINE L1 -125 6219 6012 239 138 92 62 chr3 39992838 39992903 -178044255 + HsTC2 DNA Tc2 25 91 -1807 202 200 0 43 chr3 39992920 39992990 -178044168 + CT-rich Low_complexity Low_complexity 3 69 0 489 278 116 68 chr3 39993222 39993264 -178043894 + MLT1L LTR MaLR 42 81 -534 886 286 116 37 chr3 39993264 39993747 -178043411 + LTR33 LTR ERVL 1 521 0 489 278 116 68 chr3 39993747 39994057 -178043101 + MLT1L LTR MaLR 81 411 -204 327 238 49 0 chr3 39994673 39994770 -178042388 - MIR SINE MIR -61 201 100 1687 170 69 7 chr3 39995177 39995512 -178041646 + MER47B DNA MER2_type 1 418 0 1861 187 124 134 chr3 39995868 39996818 -178040340 + LTR1B LTR ERV1 1 1020 0 576 342 42 0 chr3 39997022 39997262 -178039896 - MIR SINE MIR -12 250 1 43 20 0 0 chr3 39997427 39997477 -178039681 + AT_rich Low_complexity Low_complexity 1 50 0 1179 243 89 40 chr3 39997742 39998146 -178039012 - MLT1H LTR MaLR 0 549 126 24 32 0 0 chr3 39998263 39998294 -178038864 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr3 39998308 39998331 -178038827 + AT_rich Low_complexity Low_complexity 1 23 0 2469 44 40 0 chr3 39999130 39999427 -178037731 + AluY SINE Alu 1 309 -2 226 293 303 7 chr3 39999928 40000215 -178036943 + L3 LINE CR1 432 803 -774 596 259 28 75 chr3 40000240 40000431 -178036727 + L1MC5 LINE L1 7522 7690 -271 1575 185 14 14 chr3 40000431 40000717 -178036441 + AluJo SINE Alu 3 288 -24 596 259 28 75 chr3 40000717 40000884 -178036274 + L1MC5 LINE L1 7690 7863 -98 367 197 0 0 chr3 40000940 40001001 -178036157 + MLT1A1 LTR MaLR 117 177 -188 283 291 191 9 chr3 40001907 40002017 -178035141 - MIR3 SINE MIR -41 167 38 724 307 92 28 chr3 40002138 40002529 -178034629 + LTR33A LTR ERVL 99 514 -9 27 49 0 0 chr3 40002962 40003003 -178034155 + AT_rich Low_complexity Low_complexity 1 41 0 252 244 53 26 chr3 40003009 40003143 -178034015 + L1MDa LINE L1 2492 2637 -3903 240 315 27 13 chr3 40003155 40003304 -178033854 + L1M4 LINE L1 4418 4568 -1578 2073 134 0 0 chr3 40003650 40003957 -178033201 - AluSx SINE Alu 0 307 1 1589 115 133 44 chr3 40004294 40004564 -178032594 + AluSg SINE Alu 1 294 -16 561 344 113 26 chr3 40004639 40005133 -178032025 + HAL1b LINE L1 72 608 -740 7229 68 16 6 chr3 40005353 40006455 -178030703 + L1PA8 LINE L1 5059 6170 -2 2689 129 2 15 chr3 40007666 40008060 -178029098 - MLT1B LTR MaLR -1 389 1 350 281 96 22 chr3 40008277 40008589 -178028569 - L1MC4a LINE L1 -401 5720 5593 2419 102 0 3 chr3 40008605 40008918 -178028240 - AluSx SINE Alu 0 312 1 257 250 38 38 chr3 40008918 40008998 -178028160 - L1MC4a LINE L1 -553 5617 5538 204 361 115 0 chr3 40009007 40009129 -178028029 - MIR SINE MIR -113 149 14 921 185 12 0 chr3 40010442 40010615 -178026543 - FRAM SINE Alu -5 171 1 247 326 152 0 chr3 40010659 40010791 -178026367 - MIR SINE MIR -108 154 3 293 311 61 34 chr3 40010876 40011024 -178026134 + MER117 DNA MER1_type 46 197 0 186 43 0 0 chr3 40011270 40011293 -178025865 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6127 156 18 17 chr3 40011293 40013205 -178023953 - L1PB1 LINE L1 -10 6857 4951 18029 139 45 2 chr3 40013315 40016768 -178020390 - L1PB1 LINE L1 -3265 3597 1 1539 203 0 23 chr3 40016981 40017286 -178019872 - AluJo SINE Alu -8 304 7 1734 169 54 0 chr3 40017308 40017604 -178019554 - AluSx SINE Alu 0 312 1 906 173 0 13 chr3 40018019 40018169 -178018989 + FRAM SINE Alu 6 153 -23 261 0 0 0 chr3 40018449 40018478 -178018680 + (A)n Simple_repeat Simple_repeat 1 29 0 639 267 27 59 chr3 40018505 40018726 -178018432 + LTR16A1 LTR ERVL 197 410 -47 826 182 44 11 chr3 40019217 40019398 -178017760 + LTR41 LTR ERVL 1 187 -586 370 324 46 12 chr3 40020270 40020441 -178016717 - MIR SINE MIR -45 217 38 206 280 196 60 chr3 40021109 40021441 -178015717 + L2 LINE L2 2882 3258 -14 685 303 53 0 chr3 40021698 40021942 -178015216 - MIR SINE MIR 0 262 6 4424 133 38 6 chr3 40022050 40022764 -178014394 + L1PB4 LINE L1 5418 6154 -2 669 340 77 46 chr3 40023611 40023999 -178013159 + L3 LINE CR1 412 811 -766 474 325 34 19 chr3 40024283 40024489 -178012669 - MIR SINE MIR 0 262 54 195 299 106 82 chr3 40024579 40024786 -178012372 + L3 LINE CR1 1077 1288 -289 379 243 89 42 chr3 40024799 40024965 -178012193 - MLT1G1 LTR MaLR 0 555 370 1202 215 73 63 chr3 40024965 40025361 -178011797 - MER39 LTR ERV1 -1 706 307 240 237 0 34 chr3 40025344 40025403 -178011755 - MER34 LTR ERV1 -419 123 67 * 647 263 26 78 chr3 40025502 40025772 -178011386 - MLT1G1 LTR MaLR -339 256 1 198 289 74 30 chr3 40025773 40025908 -178011250 + L3 LINE CR1 1246 1386 -191 22 56 0 0 chr3 40026108 40026144 -178011014 + AT_rich Low_complexity Low_complexity 1 36 0 306 281 12 12 chr3 40027603 40027685 -178009473 - MIR3 SINE MIR -9 199 118 2051 140 7 0 chr3 40028016 40028309 -178008849 + AluSx SINE Alu 3 297 -15 505 242 146 42 chr3 40028647 40028812 -178008346 + MER5A DNA MER1_type 8 189 0 483 285 97 5 chr3 40029076 40029262 -178007896 - MIR SINE MIR -1 261 59 422 294 53 12 chr3 40029295 40029465 -178007693 + MER5A DNA MER1_type 7 183 -6 501 274 8 0 chr3 40029552 40029676 -178007482 - MER94 DNA DNA 0 134 10 27 0 0 0 chr3 40030621 40030648 -178006510 + AT_rich Low_complexity Low_complexity 1 27 0 1271 246 172 22 chr3 40030653 40031063 -178006095 + MLT2B1 LTR ERVL 1 485 -35 222 62 0 0 chr3 40031063 40031095 -178006063 + (CA)n Simple_repeat Simple_repeat 1 32 0 1271 246 172 22 chr3 40031095 40031132 -178006026 + MLT2B1 LTR ERVL 485 515 -5 294 308 19 39 chr3 40031336 40031440 -178005718 + LTR67 LTR ERVL 99 200 -357 260 232 58 0 chr3 40031715 40031784 -178005374 + LTR67 LTR ERVL 485 557 0 2685 112 13 16 chr3 40031967 40032343 -178004815 - THE1C LTR MaLR 0 375 1 2129 143 47 52 chr3 40032683 40033048 -178004110 - THE1B LTR MaLR 0 364 2 10953 86 60 3 chr3 40033049 40034536 -178002622 - THE1B-int LTR MaLR -6 1574 3 2320 125 48 20 chr3 40034540 40034893 -178002265 - THE1B LTR MaLR -1 363 1 572 195 231 12 chr3 40035018 40035065 -178002093 + MIR SINE MIR 2 37 -225 2628 161 29 0 chr3 40035065 40035481 -178001677 - MSTA LTR MaLR 0 428 1 572 195 231 12 chr3 40035481 40035602 -178001556 + MIR SINE MIR 37 207 -55 719 257 71 0 chr3 40035615 40035798 -178001360 - MER3 DNA MER1_type 0 209 14 636 188 6 12 chr3 40035974 40036139 -178001019 + CT-rich Low_complexity Low_complexity 1 164 0 195 281 115 52 chr3 40037002 40037098 -178000060 + MIR SINE MIR 6 107 -155 381 293 87 48 chr3 40037202 40037431 -177999727 + MLT1H LTR MaLR 116 353 -196 414 289 26 0 chr3 40039027 40039141 -177998017 + HAL1 LINE L1 776 892 -1615 567 229 63 93 chr3 40039191 40039396 -177997762 - MLT1J LTR MaLR -213 298 100 285 146 0 0 chr3 40039472 40039520 -177997638 + (CA)n Simple_repeat Simple_repeat 1 48 0 2090 258 140 24 chr3 40039528 40040696 -177996462 + HAL1 LINE L1 911 2213 -294 426 226 56 87 chr3 40040722 40040917 -177996241 + HAL1 LINE L1 2319 2507 0 2360 102 0 0 chr3 40041017 40041321 -177995837 + AluSg SINE Alu 1 304 -6 1783 163 11 3 chr3 40041575 40041858 -177995300 + AluSx SINE Alu 1 285 -27 343 125 47 16 chr3 40042151 40042215 -177994943 + L1ME2 LINE L1 5824 5889 -275 241 204 0 20 chr3 40042487 40042536 -177994622 - MIR SINE MIR -69 139 92 851 293 84 3 chr3 40043684 40043995 -177993163 - L2 LINE L2 -719 2595 2260 482 309 25 74 chr3 40044005 40044247 -177992911 - MIR SINE MIR -26 236 10 925 282 122 36 chr3 40044313 40044781 -177992377 - MLT1J LTR MaLR -2 509 2 1883 269 110 29 chr3 40045354 40046358 -177990800 + L2 LINE L2 2228 3309 -4 626 81 270 0 chr3 40046367 40046478 -177990680 - MSTA LTR MaLR -49 379 239 290 176 250 28 chr3 40046884 40046992 -177990166 + MIR SINE MIR 110 241 -21 842 232 28 43 chr3 40047532 40047743 -177989415 - MER58A DNA MER1_type 0 224 17 3080 148 27 36 chr3 40047814 40048373 -177988785 + MLT2B3 LTR ERVL 1 554 0 464 210 210 25 chr3 40048485 40048642 -177988516 - MER5A DNA MER1_type 0 189 4 273 290 109 27 chr3 40048679 40049526 -177987632 - L1MC/D LINE L1 -566 5596 4668 714 231 46 50 chr3 40049532 40049814 -177987344 - L1ME3A LINE L1 0 6170 5890 * 735 234 69 65 chr3 40049810 40050100 -177987058 - L1ME3A LINE L1 -554 5608 5318 1705 148 46 23 chr3 40050174 40050479 -177986679 - AluSx SINE Alu 0 312 1 389 329 241 30 chr3 40100679 40101287 -177935871 - L2 LINE L2 -625 2689 1908 1714 125 82 11 chr3 40101287 40101567 -177935591 - AluSx SINE Alu -12 300 1 389 329 241 30 chr3 40101567 40101669 -177935489 - L2 LINE L2 -1406 1908 1829 575 303 33 33 chr3 40101676 40101920 -177935238 - MIR SINE MIR 0 262 19 190 293 24 122 chr3 40102705 40102828 -177934330 - L2 LINE L2 -208 3064 2954 1449 67 10 0 chr3 40103442 40103635 -177933523 + L1PA5 LINE L1 5958 6152 -2 1612 134 0 0 chr3 40104713 40104937 -177932221 - AluSg/x SINE Alu -16 294 71 1027 233 67 31 chr3 40104937 40105357 -177931801 + LTR7 LTR ERV1 1 435 -15 334 212 132 16 chr3 40105592 40105901 -177931257 - L1MC/D LINE L1 -749 5397 5107 333 288 62 46 chr3 40106158 40106706 -177930452 - L1MC/D LINE L1 -2687 3459 2903 1103 247 24 16 chr3 40107127 40107500 -177929658 + Charlie8 DNA MER1_type 310 685 -1732 421 294 32 8 chr3 40107575 40107701 -177929457 - MIR SINE MIR -64 144 16 267 152 0 0 chr3 40108760 40108806 -177928352 + CT-rich Low_complexity Low_complexity 1 46 0 431 330 75 9 chr3 40109088 40109300 -177927858 - MIR SINE MIR -35 227 2 775 296 16 12 chr3 40109409 40109662 -177927496 - MIR SINE MIR 0 262 9 22 80 0 0 chr3 40109884 40109934 -177927224 + AT_rich Low_complexity Low_complexity 1 50 0 360 0 0 0 chr3 40110871 40110940 -177926218 + (TAGA)n Simple_repeat Simple_repeat 1 109 0 360 0 0 0 chr3 40110940 40110980 -177926178 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 2349 100 44 14 chr3 40110980 40111340 -177925818 - THE1C LTR MaLR -2 373 3 8924 126 55 42 chr3 40111342 40112902 -177924256 - THE1C-int LTR MaLR 0 1580 1 2070 131 74 8 chr3 40112902 40113254 -177923904 - THE1C LTR MaLR 0 375 1 249 174 105 58 chr3 40113298 40113384 -177923774 + L1MC4 LINE L1 6614 6703 -1339 4974 137 12 16 chr3 40113607 40114502 -177922656 + L1PA16 LINE L1 5273 6164 -2 22 35 0 0 chr3 40114652 40114681 -177922477 + AT_rich Low_complexity Low_complexity 1 29 0 259 289 277 0 chr3 40115065 40115148 -177922010 - MER5A DNA MER1_type -6 183 78 305 370 19 72 chr3 40115678 40115940 -177921218 + L2 LINE L2 3025 3272 0 944 62 78 0 chr3 40116096 40116225 -177920933 + MER85 DNA T2_type 1 139 0 1296 231 69 34 chr3 40117789 40118226 -177918932 + LTR16A1 LTR ERVL 1 452 -5 256 255 142 9 chr3 40118885 40118991 -177918167 - MIR SINE MIR -4 258 139 464 302 71 25 chr3 40118992 40119257 -177917901 - MLT1J LTR MaLR -63 535 212 500 202 25 8 chr3 40119394 40119513 -177917645 - MER94 DNA DNA -12 122 2 195 42 0 0 chr3 40120338 40120362 -177916796 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1350 231 84 3 chr3 40120983 40121329 -177915829 - MLT1A2 LTR MaLR 0 374 1 23 0 0 0 chr3 40122193 40122216 -177914942 + AT_rich Low_complexity Low_complexity 1 23 0 1746 169 38 20 chr3 40122420 40122764 -177914394 - MLT2D LTR ERVL -64 350 1 231 345 0 40 chr3 40122768 40122916 -177914242 + MER112 DNA MER1_type 119 260 0 716 275 192 28 chr3 40123371 40123865 -177913293 - MLT1G1 LTR MaLR -6 589 15 306 0 0 0 chr3 40123865 40123899 -177913259 + (A)n Simple_repeat Simple_repeat 1 34 0 473 267 41 7 chr3 40124036 40124182 -177912976 - MIR3 SINE MIR -52 156 6 1714 189 0 31 chr3 40124527 40124849 -177912309 - AluJb SINE Alu 0 312 1 526 319 59 0 chr3 40125416 40125585 -177911573 - MIR3 SINE MIR -3 205 27 726 282 67 56 chr3 40125816 40126248 -177910910 + MLT1K LTR MaLR 152 588 0 229 336 50 25 chr3 40126311 40126430 -177910728 - MIR3 SINE MIR -72 136 15 250 315 43 11 chr3 40126832 40126924 -177910234 + MIR3 SINE MIR 5 99 -109 254 169 65 13 chr3 40127023 40127100 -177910058 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 340 310 141 35 chr3 40127255 40127510 -177909648 + L2 LINE L2 2807 3088 -184 392 303 91 0 chr3 40127915 40128047 -177909111 + MIR SINE MIR 4 147 -115 405 309 19 6 chr3 40128047 40128209 -177908949 + MLT1J1 LTR MaLR 17 180 -266 1348 256 65 43 chr3 40128209 40128654 -177908504 - LTR16C LTR ERVL 0 491 37 457 279 85 40 chr3 40128728 40128929 -177908229 + MLT1J2 LTR MaLR 241 450 0 288 344 153 6 chr3 40129519 40129682 -177907476 - MIR SINE MIR -7 255 69 441 310 79 39 chr3 40130296 40130525 -177906633 - MIR SINE MIR -8 254 17 249 303 195 15 chr3 40130852 40131047 -177906111 + MIR SINE MIR 30 259 -3 2327 161 42 32 chr3 40131754 40132237 -177904921 + MLT2B2 LTR ERVL 2 534 -20 192 97 0 0 chr3 40132239 40132270 -177904888 + (TCCC)n Simple_repeat Simple_repeat 3 33 0 219 154 0 26 chr3 40132277 40132316 -177904842 + (TG)n Simple_repeat Simple_repeat 2 39 0 429 20 0 0 chr3 40132533 40132583 -177904575 + (TA)n Simple_repeat Simple_repeat 1 50 0 180 0 0 0 chr3 40132586 40132606 -177904552 + (GA)n Simple_repeat Simple_repeat 2 21 0 778 249 86 81 chr3 40132748 40133308 -177903850 + MLT1G LTR MaLR 10 588 -2 227 381 26 26 chr3 40133437 40133626 -177903532 - L2 LINE L2 -174 3098 2910 432 0 0 0 chr3 40134477 40134525 -177902633 + (CA)n Simple_repeat Simple_repeat 2 49 0 1074 223 48 65 chr3 40134602 40134974 -177902184 - MLT1A2 LTR MaLR -8 366 1 269 197 14 0 chr3 40135680 40135751 -177901407 + GA-rich Low_complexity Low_complexity 3 74 0 412 264 19 0 chr3 40136427 40136533 -177900625 - MIR SINE MIR -2 260 153 1972 209 26 38 chr3 40136533 40137036 -177900122 + MLT1D LTR MaLR 7 503 -2 357 263 11 32 chr3 40137037 40137132 -177900026 - MIR SINE MIR -108 154 62 458 300 115 10 chr3 40137252 40137452 -177899706 - MIR SINE MIR -1 261 41 317 242 28 99 chr3 40137993 40138175 -177898983 - MLT1H LTR MaLR -204 345 177 210 211 211 0 chr3 40139341 40139393 -177897765 + MIR SINE MIR 90 152 -56 240 266 38 13 chr3 40139790 40139869 -177897289 - MLT1J1 LTR MaLR -294 152 72 2020 128 0 16 chr3 40140113 40140418 -177896740 - AluSx SINE Alu -12 300 1 319 290 19 9 chr3 40140628 40140735 -177896423 + L1ME4a LINE L1 5554 5661 -460 637 151 0 0 chr3 40140746 40140839 -177896319 - FRAM SINE Alu -25 151 59 995 263 75 36 chr3 40141002 40141535 -177895623 + L1MC4 LINE L1 7488 8041 -1 366 278 139 32 chr3 40141585 40141801 -177895357 + L1ME4a LINE L1 5879 6117 -4 215 318 19 37 chr3 40143166 40143273 -177893885 + L2 LINE L2 1359 1463 -1851 1169 266 88 146 chr3 40143395 40143576 -177893582 + L2 LINE L2 1707 1897 -1416 2516 70 0 0 chr3 40143576 40143876 -177893282 - AluY SINE Alu -11 300 1 1169 266 88 146 chr3 40143876 40144464 -177892694 + L2 LINE L2 1897 2517 -796 468 35 0 0 chr3 40144464 40144522 -177892636 + (CA)n Simple_repeat Simple_repeat 1 58 0 1169 266 88 146 chr3 40144522 40145261 -177891897 + L2 LINE L2 2517 3085 -228 2095 109 10 7 chr3 40145261 40145565 -177891593 - AluSp SINE Alu -8 305 1 1169 266 88 146 chr3 40145565 40145782 -177891376 + L2 LINE L2 3085 3313 0 2454 71 0 13 chr3 40145867 40146178 -177890980 + AluY SINE Alu 5 311 0 212 267 44 78 chr3 40146882 40146972 -177890186 + MIR SINE MIR 75 161 -101 670 282 63 15 chr3 40147089 40147486 -177889672 + L1MCa LINE L1 1219 1634 -4792 331 317 138 0 chr3 40147694 40147839 -177889319 - MER5B DNA MER1_type -3 175 11 522 260 39 0 chr3 40147998 40148125 -177889033 - MER5B DNA MER1_type -5 173 42 1532 202 0 39 chr3 40148145 40148452 -177888706 - AluJo SINE Alu -17 295 1 259 358 115 12 chr3 40149254 40149419 -177887739 + MER5A DNA MER1_type 8 189 0 * 731 272 51 13 chr3 40149419 40149643 -177887515 + MIR SINE MIR 16 243 -19 5353 184 28 14 chr3 40150031 40151356 -177885802 - L1MC2 LINE L1 -40 6304 4943 189 0 0 0 chr3 40151356 40151377 -177885781 + (TC)n Simple_repeat Simple_repeat 2 22 0 5353 184 28 14 chr3 40151377 40151858 -177885300 - L1MC2 LINE L1 -1401 4943 4470 189 211 0 0 chr3 40152015 40152067 -177885091 + (TATATG)n Simple_repeat Simple_repeat 6 57 0 261 293 61 24 chr3 40152288 40152500 -177884658 - L1ME LINE L1 -340 5781 5562 442 303 94 37 chr3 40152550 40152794 -177884364 - L1ME LINE L1 -2271 5514 5257 386 315 92 59 chr3 40152921 40153311 -177883847 + L3 LINE CR1 1086 1488 -89 508 316 25 5 chr3 40154786 40154982 -177882176 + LTR16B LTR ERVL 223 422 -42 3783 152 23 54 chr3 40155563 40156400 -177880758 + L1PB4 LINE L1 5344 6154 -2 316 293 128 15 chr3 40157003 40157136 -177880022 - MIR3 SINE MIR -41 167 20 1527 281 122 15 chr3 40157602 40158200 -177878958 + MLT2F LTR ERVL 2 663 0 260 269 76 56 chr3 40158409 40158606 -177878552 + MLT1H LTR MaLR 342 542 -7 481 333 129 0 chr3 40158743 40158968 -177878190 + MIR SINE MIR 5 258 -4 705 249 52 43 chr3 40159605 40159838 -177877320 - MIR SINE MIR 0 262 28 201 74 0 0 chr3 40160381 40160408 -177876750 + (CAG)n Simple_repeat Simple_repeat 2 28 0 459 302 137 26 chr3 40160884 40161245 -177875913 + L2 LINE L2 2614 3016 -256 333 293 35 0 chr3 40161245 40161361 -177875797 + LTR33 LTR ERVL 1 120 -401 1857 138 74 19 chr3 40161700 40162025 -177875133 + MER61A LTR ERV1 1 343 0 2427 180 28 18 chr3 40162025 40162569 -177874589 + MER61A-int LTR ERV1 1 549 -4668 271 128 0 21 chr3 40162617 40162664 -177874494 + MER61A-int LTR ERV1 732 777 -4440 10139 79 27 19 chr3 40162700 40164309 -177872849 + MER61A-int LTR ERV1 1411 3031 -2186 17214 90 19 13 chr3 40164409 40167354 -177869804 + MER61A-int LTR ERV1 2211 5217 0 1572 169 63 30 chr3 40167354 40167686 -177869472 + MER61A LTR ERV1 1 343 0 202 310 0 0 chr3 40167696 40167754 -177869404 + L2 LINE L2 3256 3313 0 201 358 84 0 chr3 40168114 40168209 -177868949 + MIR SINE MIR 100 202 -60 402 292 151 16 chr3 40168607 40168792 -177868366 + MIR SINE MIR 53 262 0 1573 217 37 45 chr3 40169396 40169701 -177867457 - MLT1D LTR MaLR 0 505 204 780 204 0 0 chr3 40169701 40169833 -177867325 - FLAM_A SINE Alu -1 132 1 1573 217 37 45 chr3 40169833 40170016 -177867142 - MLT1D LTR MaLR -301 204 21 289 133 0 0 chr3 40171020 40171065 -177866093 - MADE1 DNA Mariner 0 80 36 937 301 60 0 chr3 40171066 40171401 -177865757 - LTR16C LTR ERVL -57 434 80 2810 134 4 13 chr3 40171780 40172234 -177864924 + L1PA16 LINE L1 5716 6165 -1 203 234 43 0 chr3 40172428 40172475 -177864683 + L2 LINE L2 3242 3290 -23 2333 114 34 0 chr3 40172537 40172889 -177864269 + THE1B LTR MaLR 1 364 0 186 43 0 0 chr3 40173335 40173358 -177863800 + (A)n Simple_repeat Simple_repeat 1 23 0 299 338 65 13 chr3 40173624 40173778 -177863380 + L2 LINE L2 2245 2406 -908 1939 258 108 24 chr3 40174358 40175095 -177862063 - L1MD2 LINE L1 -227 6066 5268 23 0 0 0 chr3 40175123 40175146 -177862012 + AT_rich Low_complexity Low_complexity 1 23 0 2068 48 0 0 chr3 40175358 40175606 -177861552 - L1PA7 LINE L1 -2 6152 5905 2628 120 12 8 chr3 40175619 40176019 -177861139 - LTR3 LTR ERVK -9 423 22 4983 57 7 3 chr3 40176037 40176750 -177860408 - L1PA7 LINE L1 -242 5912 5198 1250 88 0 0 chr3 40176747 40176928 -177860230 - L1P3 LINE L1 -5176 1285 1105 * 226 139 0 0 chr3 40176948 40176984 -177860174 + U2 snRNA snRNA 1 36 -152 292 188 50 0 chr3 40176984 40177064 -177860094 + L1ME4a LINE L1 5319 5402 -957 * 5424 253 60 27 chr3 40177061 40177085 -177860073 - L1MD2 LINE L1 -1634 4446 4424 2122 159 11 124 chr3 40177085 40177633 -177859525 + MER66B LTR ERV1 1 486 0 5424 253 60 27 chr3 40177633 40180004 -177857154 - L1MD2 LINE L1 -1656 4424 1935 2145 73 33 4 chr3 40180004 40180303 -177856855 - AluY SINE Alu 0 307 1 5424 253 60 27 chr3 40180303 40180932 -177856226 - L1MD2 LINE L1 -4145 1935 1328 974 255 82 55 chr3 40180945 40181708 -177855450 - L1MD2 LINE L1 -4864 1216 469 3077 152 40 78 chr3 40181825 40182543 -177854615 + LTR8 LTR ERV1 1 691 0 358 235 10 0 chr3 40183609 40183736 -177853422 + L1ME4a LINE L1 5695 5826 -295 226 241 19 0 chr3 40183787 40183895 -177853263 + (TA)n Simple_repeat Simple_repeat 1 110 0 1443 219 16 42 chr3 40184431 40184716 -177852442 + L1ME1 LINE L1 5740 6012 -154 1612 156 65 54 chr3 40184716 40185087 -177852071 - THE1C LTR MaLR 0 375 1 1443 219 16 42 chr3 40185087 40185235 -177851923 + L1ME1 LINE L1 6012 6162 -4 867 216 6 0 chr3 40185392 40185563 -177851595 + FRAM SINE Alu 1 166 -10 542 244 39 0 chr3 40185563 40185690 -177851468 - MER5B DNA MER1_type -45 133 2 189 304 108 78 chr3 40186167 40186371 -177850787 - MIR SINE MIR -50 212 3 207 203 43 43 chr3 40186417 40186486 -177850672 - MIR SINE MIR 0 262 194 536 232 18 0 chr3 40186530 40186642 -177850516 - MIR SINE MIR -71 191 78 767 180 16 0 chr3 40187549 40187671 -177849487 - FLAM_C SINE Alu -19 124 1 361 167 52 52 chr3 40189104 40189200 -177847958 + MER53 DNA DNA 23 118 -71 4171 147 36 1 chr3 40189223 40189970 -177847188 - L1PA16 LINE L1 0 6166 5394 * 6972 222 36 11 chr3 40189969 40192254 -177844904 - L1PA15-16 LINE L1 -2640 4209 1852 2584 93 6 0 chr3 40192305 40192658 -177844500 + THE1A LTR MaLR 1 355 0 471 248 116 0 chr3 40192669 40192798 -177844360 + MLT1A1 LTR MaLR 199 342 -23 243 91 0 0 chr3 40192796 40192829 -177844329 + U2 snRNA snRNA 1 33 -155 * 357 242 48 0 chr3 40193921 40194045 -177843113 + LTR16A1 LTR ERVL 320 449 -8 1044 221 91 100 chr3 40194674 40195135 -177842023 - LTR16A1 LTR ERVL 0 457 1 333 161 0 0 chr3 40196631 40196687 -177840471 + U2 snRNA snRNA 4 59 -129 371 332 30 64 chr3 40196687 40196952 -177840206 - MIR SINE MIR -1 261 6 254 397 45 10 chr3 40197147 40197439 -177839719 + L2 LINE L2 2456 2757 -557 1362 265 54 15 chr3 40197703 40198167 -177838991 - LTR16C LTR ERVL -6 485 4 370 266 62 9 chr3 40198174 40198287 -177838871 + MER94 DNA DNA 9 127 -7 240 355 40 24 chr3 40198492 40198616 -177838542 + MIR SINE MIR 21 146 -62 241 246 36 103 chr3 40199476 40199671 -177837487 - HAL1 LINE L1 -1 2506 2325 983 282 52 70 chr3 40199672 40200155 -177837003 + MLT1J LTR MaLR 1 474 -37 789 289 109 33 chr3 40200185 40200815 -177836343 - HAL1 LINE L1 -188 2319 1642 357 312 45 13 chr3 40202367 40202521 -177834637 + MIR SINE MIR 53 211 -51 272 346 19 57 chr3 40202731 40202890 -177834268 - MER5A DNA MER1_type -2 187 35 230 320 20 67 chr3 40202759 40202909 -177834249 + MER5A DNA MER1_type 43 185 -4 * 219 296 0 0 chr3 40204013 40204067 -177833091 + (CA)n Simple_repeat Simple_repeat 2 55 0 193 273 169 0 chr3 40204252 40204329 -177832829 + MIR SINE MIR 112 201 -61 1934 213 67 17 chr3 40204383 40204864 -177832294 + MLT1D LTR MaLR 1 374 0 625 348 49 22 chr3 40206162 40206610 -177830548 + MLT1K LTR MaLR 10 469 -119 259 353 63 43 chr3 40206682 40206889 -177830269 - L2 LINE L2 -388 2926 2716 1509 225 45 25 chr3 40206956 40207400 -177829758 + Charlie4a DNA MER1_type 36 488 -20 637 229 51 40 chr3 40208692 40208719 -177828439 - MER45A DNA AcHobo -1404 177 152 1889 133 29 52 chr3 40208719 40208877 -177828281 + THE1C LTR MaLR 1 161 -214 2441 69 10 0 chr3 40208877 40209183 -177827975 - AluY SINE Alu -2 309 1 1889 133 29 52 chr3 40209183 40209408 -177827750 + THE1C LTR MaLR 161 375 0 637 229 51 40 chr3 40209408 40209555 -177827603 - MER45A DNA AcHobo -1429 152 1 362 279 53 89 chr3 40209890 40210398 -177826760 - HAL1 LINE L1 -905 1602 1113 2941 224 59 9 chr3 40210796 40211590 -177825568 + MER97a DNA MER1_type? 57 890 -4 696 286 56 31 chr3 40212456 40212871 -177824287 + MLT1G LTR MaLR 10 416 -126 2009 149 10 0 chr3 40213327 40213635 -177823523 - AluSx SINE Alu -1 311 1 404 277 45 25 chr3 40213974 40214321 -177822837 + MER110A LTR ERV1 95 470 0 188 135 27 0 chr3 40214480 40214517 -177822641 + GA-rich Low_complexity Low_complexity 3 40 0 685 278 16 26 chr3 40214519 40214713 -177822445 - MIR SINE MIR -64 198 7 946 198 21 11 chr3 40217073 40217260 -177819898 - MER5A DNA MER1_type 0 189 1 243 193 18 18 chr3 40217386 40217443 -177819715 + GA-rich Low_complexity Low_complexity 4 60 0 210 286 71 14 chr3 40218245 40218315 -177818843 + L2 LINE L2 3161 3234 -38 616 230 0 0 chr3 40218767 40218880 -177818278 + MER81 DNA DNA 1 113 -1 308 292 6 60 chr3 40220058 40220214 -177816944 - MIR SINE MIR -63 145 36 302 252 204 10 chr3 40220407 40220510 -177816648 - L2 LINE L2 0 3272 3150 949 202 83 0 chr3 40220515 40220708 -177816450 - MER58A DNA MER1_type -3 221 13 192 77 0 0 chr3 40220771 40220797 -177816361 + (TTG)n Simple_repeat Simple_repeat 2 27 0 372 180 144 14 chr3 40220823 40220962 -177816196 - L1ME4a LINE L1 -4 6117 5961 222 37 0 0 chr3 40221070 40221097 -177816061 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 5028 96 64 73 chr3 40221117 40222020 -177815138 - THE1B-int LTR MaLR -685 895 1 2347 138 3 22 chr3 40222020 40222391 -177814767 - THE1B LTR MaLR 0 364 1 442 331 11 0 chr3 40222443 40222618 -177814540 - LTR16A LTR ERVL -89 361 185 260 307 44 0 chr3 40223042 40223156 -177814002 + (TGAG)n Simple_repeat Simple_repeat 3 121 0 236 228 0 0 chr3 40223336 40223393 -177813765 + Charlie8 DNA MER1_type 1360 1416 -1001 826 294 58 7 chr3 40223422 40223697 -177813461 - LTR16C LTR ERVL -14 477 189 201 194 30 104 chr3 40224972 40225039 -177812119 - MIR SINE MIR -111 151 90 643 277 53 77 chr3 40225475 40225854 -177811304 - MLT1J LTR MaLR -52 459 90 2039 136 27 3 chr3 40226054 40226392 -177810766 - L1PB4 LINE L1 0 6156 5811 284 277 39 15 chr3 40227463 40227593 -177809565 - L1ME4a LINE L1 -310 5811 5679 289 307 111 29 chr3 40227901 40228217 -177808941 + L1MC/D LINE L1 5317 5658 -2150 249 208 0 0 chr3 40228227 40228299 -177808859 + (CA)n Simple_repeat Simple_repeat 1 72 0 450 0 0 0 chr3 40228326 40228376 -177808782 + (A)n Simple_repeat Simple_repeat 1 50 0 21 36 0 0 chr3 40228397 40228425 -177808733 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr3 40228481 40228504 -177808654 + AT_rich Low_complexity Low_complexity 1 23 0 40 37 0 0 chr3 40228526 40228580 -177808578 + AT_rich Low_complexity Low_complexity 1 54 0 535 259 5 22 chr3 40228580 40228765 -177808393 - L1PB2 LINE L1 -19 6132 5951 185 229 0 66 chr3 40230332 40230393 -177806765 + L2 LINE L2 3257 3313 0 1518 237 121 11 chr3 40230433 40230978 -177806180 + L1ME3 LINE L1 5488 6092 -70 244 179 45 0 chr3 40231005 40231072 -177806086 + (CATA)n Simple_repeat Simple_repeat 3 72 0 243 293 61 12 chr3 40231250 40231332 -177805826 - MIR SINE MIR -62 146 61 264 30 0 0 chr3 40231365 40231398 -177805760 + (CA)n Simple_repeat Simple_repeat 2 34 0 2383 95 0 3 chr3 40231981 40232287 -177804871 - AluSg1 SINE Alu 0 309 5 523 299 7 14 chr3 40233170 40233317 -177803841 + MIR SINE MIR 12 157 -105 41 58 0 0 chr3 40233322 40233391 -177803767 + AT_rich Low_complexity Low_complexity 1 69 0 1449 67 10 0 chr3 40234276 40234469 -177802689 - L1PA5 LINE L1 -2 6152 5958 918 302 16 4 chr3 40234941 40235186 -177801972 - MIR SINE MIR 0 262 15 285 318 140 9 chr3 40235772 40235879 -177801279 - L2 LINE L2 0 3313 3193 1104 186 13 22 chr3 40235883 40236109 -177801049 - MER58A DNA MER1_type 0 224 1 466 267 107 9 chr3 40236168 40236393 -177800765 - HAL1b LINE L1 -798 550 304 22 0 0 0 chr3 40236710 40236732 -177800426 + AT_rich Low_complexity Low_complexity 1 22 0 1663 217 14 22 chr3 40236838 40237206 -177799952 + MLT1A1 LTR MaLR 1 365 0 186 103 0 0 chr3 40237515 40237544 -177799614 + (TG)n Simple_repeat Simple_repeat 2 30 0 579 312 43 19 chr3 40238748 40239169 -177797989 - L1ME3A LINE L1 -239 5931 5500 209 281 0 31 chr3 40239336 40239400 -177797758 - L2 LINE L2 -3 3310 3249 403 304 0 20 chr3 40239539 40239687 -177797471 + MIR SINE MIR 118 262 0 302 277 45 9 chr3 40240093 40240201 -177796957 - MLT1L LTR MaLR -27 588 477 693 310 29 14 chr3 40240201 40240653 -177796505 + LTR16C LTR ERVL 3 491 0 326 227 48 51 chr3 40240720 40240946 -177796212 - MLT1L LTR MaLR -332 283 11 1003 167 105 4 chr3 40242781 40243029 -177794129 + MER33 DNA MER1_type 1 266 -58 21 0 0 0 chr3 40243671 40243692 -177793466 + AT_rich Low_complexity Low_complexity 1 21 0 435 270 104 65 chr3 40243990 40244385 -177792773 + L2 LINE L2 2266 2734 -580 1660 265 62 16 chr3 40244436 40245284 -177791874 + L1ME3A LINE L1 5083 5973 -197 774 146 18 111 chr3 40245291 40245462 -177791696 + AluJo SINE Alu 101 255 -57 1219 202 36 39 chr3 40246038 40246375 -177790783 - L1MB7 LINE L1 -20 6164 5829 1458 187 67 12 chr3 40247892 40248259 -177788899 - L1MB2 LINE L1 -7 6164 5815 4854 151 23 4 chr3 40248267 40249848 -177787310 - L1PA16 LINE L1 -9 6157 4549 1879 110 11 0 chr3 40250046 40250309 -177786849 + AluSq SINE Alu 1 266 -47 35 0 0 0 chr3 40252401 40252436 -177784722 + AT_rich Low_complexity Low_complexity 1 35 0 296 336 64 0 chr3 40252616 40252741 -177784417 - MIR SINE MIR -77 185 53 287 355 152 5 chr3 40253275 40253486 -177783672 + MIR SINE MIR 8 249 -13 849 297 76 54 chr3 40253725 40254227 -177782931 - MLT1K LTR MaLR -65 523 11 764 275 32 53 chr3 40254266 40254513 -177782645 - MIR SINE MIR -1 261 20 1245 206 54 42 chr3 40254553 40254888 -177782270 + MLT1D LTR MaLR 22 360 -145 253 105 0 53 chr3 40254919 40254976 -177782182 + (TCTCC)n Simple_repeat Simple_repeat 1 54 0 1446 254 123 40 chr3 40255025 40255601 -177781557 + MLT1E3 LTR MaLR 1 624 0 659 190 0 25 chr3 40255680 40255828 -177781330 + FLAM_A SINE Alu 5 133 0 552 225 50 8 chr3 40256200 40256320 -177780838 + MIR SINE MIR 72 196 -66 558 240 77 52 chr3 40256605 40256838 -177780320 - MIR SINE MIR -12 250 12 180 0 0 0 chr3 40257227 40257247 -177779911 + (T)n Simple_repeat Simple_repeat 1 20 0 296 257 181 0 chr3 40258003 40258108 -177779050 + MER5C DNA MER1_type 2 125 -199 229 236 28 14 chr3 40258238 40258310 -177778848 + GA-rich Low_complexity Low_complexity 3 75 0 635 263 91 51 chr3 40258390 40258762 -177778396 + L2 LINE L2 2887 3273 -40 383 38 19 0 chr3 40258775 40258828 -177778330 + (TGAA)n Simple_repeat Simple_repeat 4 57 0 189 302 82 63 chr3 40259256 40259415 -177777743 + MIR SINE MIR 15 176 -86 301 164 18 0 chr3 40260092 40260147 -177777011 + L2 LINE L2 3257 3312 -1 4993 140 49 10 chr3 40261117 40262657 -177774501 - L1PB2 LINE L1 -2 6149 4549 444 212 62 26 chr3 40262906 40263019 -177774139 + MER63 DNA MER1_type 1 743 -93 562 310 58 25 chr3 40263709 40263983 -177773175 - MER115 DNA AcHobo -263 430 148 317 329 77 12 chr3 40264088 40264258 -177772900 - L2 LINE L2 -161 3111 2931 840 196 0 80 chr3 40264832 40265031 -177772127 - MER58A DNA MER1_type -2 222 40 2106 122 7 0 chr3 40265448 40265742 -177771416 + AluSg SINE Alu 3 298 -12 503 332 22 32 chr3 40265771 40266048 -177771110 - MLT1I LTR MaLR -64 345 72 421 346 58 5 chr3 40266101 40266289 -177770869 + MIR SINE MIR 63 260 -2 192 419 12 12 chr3 40266278 40266364 -177770794 + MIR SINE MIR 55 140 -68 * 1019 306 72 15 chr3 40266681 40267138 -177770020 + MLT2E LTR ERVL 1 483 -145 484 109 20 79 chr3 40267138 40267182 -177769976 + MLT1B LTR MaLR 1 46 -344 2167 76 0 0 chr3 40267182 40267458 -177769700 - AluY SINE Alu -17 294 19 484 109 20 79 chr3 40267458 40267514 -177769644 + MLT1B LTR MaLR 46 95 -295 659 187 7 43 chr3 40267528 40267667 -177769491 - AluJo SINE Alu -178 134 1 1448 139 25 65 chr3 40267670 40267993 -177769165 + MLT1B LTR MaLR 81 390 0 5748 85 22 3 chr3 40268099 40268959 -177768199 + L1PA12 LINE L1 5291 6166 -2 310 164 82 0 chr3 40268967 40269028 -177768130 + MLT2E LTR ERVL 563 628 0 632 268 113 22 chr3 40269028 40269259 -177767899 + MIR SINE MIR 10 261 -1 1909 251 8 32 chr3 40269529 40269662 -177767496 + MLT1F LTR MaLR 1 136 -406 2165 112 0 16 chr3 40269662 40269974 -177767184 + AluSx SINE Alu 1 307 -5 1909 251 8 32 chr3 40269974 40270335 -177766823 + MLT1F LTR MaLR 136 483 -59 490 257 45 92 chr3 40270421 40270700 -177766458 - MIR SINE MIR 0 262 3 2140 128 76 17 chr3 40271405 40271749 -177765409 - THE1B LTR MaLR 0 364 1 367 244 170 9 chr3 40272108 40272357 -177764801 - L1MC/D LINE L1 -561 5560 5478 221 175 53 0 chr3 40273007 40273064 -177764094 + (TA)n Simple_repeat Simple_repeat 1 60 0 790 237 114 31 chr3 40273092 40273409 -177763749 - MER2 DNA MER2_type -1 343 1 321 301 50 60 chr3 40273411 40273748 -177763410 - L1ME3A LINE L1 -243 5927 5592 1655 249 75 78 chr3 40273764 40275032 -177762126 - L1MC5 LINE L1 -58 7903 6640 990 231 9 9 chr3 40275358 40275579 -177761579 - MER58A DNA MER1_type 0 224 4 387 261 76 17 chr3 40276848 40276967 -177760191 + MIR SINE MIR 60 185 -77 814 246 63 85 chr3 40276999 40277553 -177759605 + MER34 LTR ERV1 1 542 0 182 257 0 0 chr3 40277797 40277832 -177759326 + L2 LINE L2 3263 3297 -16 538 258 145 6 chr3 40277930 40278089 -177759069 + MER5A DNA MER1_type 9 189 0 289 240 120 38 chr3 40278846 40279112 -177758046 - MER34 LTR ERV1 0 734 353 337 253 143 58 chr3 40279473 40279627 -177757531 - L1ME4a LINE L1 -87 6034 5868 300 319 8 17 chr3 40279679 40279798 -177757360 - L1MC4 LINE L1 -5 8037 7920 1438 189 130 13 chr3 40280280 40280656 -177756502 - MER39 LTR ERV1 0 707 288 1522 107 51 5 chr3 40280698 40280914 -177756244 - AluSg/x SINE Alu 0 312 87 10170 123 30 4 chr3 40280917 40282560 -177754598 - Tigger1 DNA MER2_type -733 1685 1 2106 130 0 3 chr3 40282583 40282895 -177754263 - AluSx SINE Alu 0 311 1 195 275 0 0 chr3 40283916 40283956 -177753202 + L2 LINE L2 3215 3254 -18 305 232 63 11 chr3 40284130 40284225 -177752933 - MER103 DNA DNA -45 121 22 21 36 0 0 chr3 40285078 40285106 -177752052 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr3 40285132 40285169 -177751989 + AT_rich Low_complexity Low_complexity 1 37 0 1485 216 86 16 chr3 40285916 40286083 -177751075 + LTR37B LTR ERV1 9 163 -305 2548 187 38 27 chr3 40286083 40286635 -177750523 + MER89 LTR ERV1 1 558 -1 1485 216 86 16 chr3 40286635 40286897 -177750261 + LTR37B LTR ERV1 163 468 0 1646 157 128 33 chr3 40288168 40288621 -177748537 + LTR54B LTR ERV1 1 496 -2 309 324 10 0 chr3 40288787 40288889 -177748269 - L1ME4a LINE L1 -289 5881 5779 573 211 122 102 chr3 40289173 40289477 -177747681 - MLT1H LTR MaLR -125 424 115 552 233 54 3 chr3 40289480 40289680 -177747478 - MLT1G1 LTR MaLR 0 595 298 447 296 60 9 chr3 40289706 40289918 -177747240 - MLT1G1 LTR MaLR -332 223 1 251 255 20 20 chr3 40289927 40290025 -177747133 - MLT1H LTR MaLR -444 105 8 1458 155 21 55 chr3 40291330 40291621 -177745537 - AluJo SINE Alu -15 297 17 279 317 35 13 chr3 40292066 40292293 -177744865 + L1ME3A LINE L1 2903 3134 -3012 585 269 115 15 chr3 40292667 40293411 -177743747 + L1ME3A LINE L1 5118 5925 -245 472 82 59 24 chr3 40293740 40293825 -177743333 + MER4A LTR ERV1 1 88 -576 1595 116 50 28 chr3 40293834 40294172 -177742986 + MER4A LTR ERV1 261 664 0 5642 120 12 9 chr3 40294637 40295528 -177741630 + MER4D LTR ERV1 1 894 -9 2300 225 103 21 chr3 40295622 40296249 -177740909 - L1ME2 LINE L1 -25 6139 5422 1394 211 11 7 chr3 40296249 40296549 -177740609 - AluJb SINE Alu 0 301 1 2300 225 103 21 chr3 40296549 40296782 -177740376 - L1ME2 LINE L1 -742 5422 5209 * 5658 158 26 30 chr3 40296757 40298862 -177738296 - L1 LINE L1 -2664 4901 2811 2119 140 36 36 chr3 40298862 40299226 -177737932 - THE1B LTR MaLR 0 364 1 10802 112 2 8 chr3 40299226 40300317 -177736841 - THE1B-int LTR MaLR 0 1580 499 7556 33 0 0 chr3 40300317 40301533 -177735625 - L1PA4 LINE L1 0 6155 4938 10802 112 2 8 chr3 40301533 40302030 -177735128 - THE1B-int LTR MaLR -1081 499 1 2223 124 33 33 chr3 40302030 40302392 -177734766 - THE1B LTR MaLR 0 364 3 12897 171 76 24 chr3 40302394 40304956 -177732202 - L1 LINE L1 -4750 2815 106 2257 101 3 10 chr3 40304956 40305263 -177731895 + AluSc SINE Alu 1 305 -4 12897 171 76 24 chr3 40305263 40305375 -177731783 - L1 LINE L1 -7459 106 1 730 315 88 49 chr3 40305416 40306351 -177730807 + L1MC/D LINE L1 4605 5585 -748 306 0 0 0 chr3 40306643 40306677 -177730481 + (CA)n Simple_repeat Simple_repeat 2 35 0 213 351 108 9 chr3 40306938 40307049 -177730109 - L3 LINE CR1 -1025 552 431 525 284 91 50 chr3 40307884 40308299 -177728859 - MLT1K LTR MaLR 0 588 139 1113 223 31 71 chr3 40308544 40308925 -177728233 + MLT1A2 LTR MaLR 1 366 -8 211 345 164 34 chr3 40309105 40309604 -177727554 + L2 LINE L2 1932 2495 -819 282 289 148 23 chr3 40309638 40309766 -177727392 + L2 LINE L2 2630 2773 -541 558 286 44 28 chr3 40309925 40310107 -177727051 - MIR SINE MIR -65 197 13 246 256 51 13 chr3 40310183 40310261 -177726897 + Charlie4 DNA MER1_type 1863 1943 -18 415 332 31 26 chr3 40311631 40311860 -177725298 + MLT1L LTR MaLR 364 593 -22 207 301 109 58 chr3 40312004 40312280 -177724878 + L2 LINE L2 2656 2945 -369 273 336 24 0 chr3 40313990 40314115 -177723043 - MIR SINE MIR -17 245 118 241 419 27 7 chr3 40314395 40314543 -177722615 - L2 LINE L2 -454 2860 2710 243 173 0 0 chr3 40315193 40315245 -177721913 + (CA)n Simple_repeat Simple_repeat 2 53 0 185 352 21 28 chr3 40316060 40316202 -177720956 + L2 LINE L2 2341 2481 -833 406 307 79 36 chr3 40316250 40316579 -177720579 + L2 LINE L2 2599 2941 -373 185 300 56 33 chr3 40316732 40316822 -177720336 + L2 LINE L2 3181 3272 0 360 125 0 0 chr3 40319329 40319393 -177717765 + (GA)n Simple_repeat Simple_repeat 1 64 0 212 247 188 35 chr3 40320459 40320544 -177716614 + L2 LINE L2 3155 3252 -20 865 198 11 28 chr3 40320814 40320996 -177716162 + AluJb SINE Alu 134 312 0 1614 162 0 52 chr3 40321446 40321736 -177715422 + AluJo SINE Alu 3 277 -35 180 0 0 0 chr3 40321749 40321769 -177715389 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 2111 119 3 7 chr3 40323035 40323330 -177713828 + AluSq SINE Alu 1 294 -19 21 0 0 0 chr3 40323724 40323745 -177713413 + AT_rich Low_complexity Low_complexity 1 21 0 424 317 117 44 chr3 40374263 40374673 -177662485 + L2 LINE L2 2828 3267 -5 358 189 132 9 chr3 40374673 40374779 -177662379 + MER103 DNA DNA 37 155 -11 1993 246 87 27 chr3 40375281 40375311 -177661847 - MLT1G1 LTR MaLR 0 595 568 1838 155 129 26 chr3 40375311 40375699 -177661459 + MSTA LTR MaLR 1 428 0 9843 117 11 56 chr3 40375701 40377353 -177659805 + MSTA-int LTR MaLR 3 1580 0 2146 135 128 13 chr3 40377353 40377737 -177659421 + MSTA LTR MaLR 1 428 0 1993 246 87 27 chr3 40377737 40378263 -177658895 - MLT1G1 LTR MaLR -26 569 1 1802 123 0 0 chr3 40378521 40378764 -177658394 + AluSc SINE Alu 62 304 -5 698 332 87 7 chr3 40379217 40379633 -177657525 + LTR16A LTR ERVL 2 450 0 942 283 75 40 chr3 40381000 40381400 -177655758 + LTR16C LTR ERVL 73 486 -5 726 323 70 29 chr3 40381880 40382292 -177654866 - LTR16B LTR ERVL -31 433 5 1499 244 9 9 chr3 40382362 40382678 -177654480 + MLT1I LTR MaLR 94 409 0 395 253 20 10 chr3 40384507 40384606 -177652552 - MIR SINE MIR -61 147 48 395 287 7 44 chr3 40385087 40385223 -177651935 - L2 LINE L2 -4 3268 3138 1319 252 117 68 chr3 40386906 40386957 -177650201 + MLT1G1 LTR MaLR 5 52 -543 2316 108 108 38 chr3 40386957 40387357 -177649801 - MSTA LTR MaLR 0 428 1 9817 157 30 2 chr3 40387357 40388964 -177648194 - MSTA-int LTR MaLR 0 1651 1 2314 98 103 54 chr3 40388966 40389188 -177647970 - MSTA LTR MaLR -2 426 216 2225 92 0 7 chr3 40389188 40389494 -177647664 - AluSg SINE Alu 0 304 1 2314 98 103 54 chr3 40389494 40389676 -177647482 - MSTA LTR MaLR -212 216 1 1319 252 117 68 chr3 40389676 40390183 -177646975 + MLT1G1 LTR MaLR 52 595 0 183 305 183 0 chr3 40390183 40390314 -177646844 - L2 LINE L2 -472 2842 2688 1152 282 76 6 chr3 40390322 40390652 -177646506 - MLT1H1 LTR MaLR -199 356 4 396 279 12 31 chr3 40390719 40390880 -177646278 + L2 LINE L2 3156 3313 0 206 196 78 0 chr3 40390883 40390934 -177646224 + L2 LINE L2 3180 3234 -79 215 308 26 13 chr3 40391784 40391862 -177645296 + MIR SINE MIR 29 107 -155 19802 153 33 43 chr3 40391871 40397617 -177639541 + L1MA2 LINE L1 13 5834 -1731 1251 77 0 0 chr3 40397617 40397773 -177639385 + AluY SINE Alu 150 305 -6 19802 153 33 43 chr3 40397773 40398694 -177638464 + L1MA2 LINE L1 5834 6763 -802 4192 121 34 0 chr3 40398794 40399465 -177637693 + L1MA2 LINE L1 7030 7723 0 279 269 51 0 chr3 40399493 40399568 -177637590 + MIR SINE MIR 106 184 -78 510 331 88 22 chr3 40399568 40399749 -177637409 + MER91A DNA MER1_type 1 193 -3 31 44 0 0 chr3 40399774 40399819 -177637339 + AT_rich Low_complexity Low_complexity 1 45 0 228 353 12 0 chr3 40399821 40399906 -177637252 + MIR SINE MIR 175 260 -2 367 245 0 16 chr3 40400262 40400384 -177636774 + L1MC/D LINE L1 5653 5768 -353 1301 226 109 24 chr3 40400580 40401001 -177636157 - LTR16A1 LTR ERVL 0 457 1 2244 100 0 0 chr3 40401263 40401553 -177635605 + AluSg SINE Alu 1 290 -20 351 286 59 84 chr3 40404307 40405353 -177631805 + L1P LINE L1 2933 3937 -2209 508 243 19 0 chr3 40405353 40405460 -177631698 + MER81 DNA DNA 5 113 -1 351 286 59 84 chr3 40405460 40405774 -177631384 + L1P LINE L1 3937 4258 -1888 853 274 87 0 chr3 40406925 40407224 -177629934 - MLT1I LTR MaLR 0 409 85 365 275 25 25 chr3 40408272 40408392 -177628766 - MLT1L LTR MaLR -84 531 412 364 238 59 30 chr3 40408644 40408745 -177628413 + MIR3 SINE MIR 97 200 -8 503 283 54 0 chr3 40408774 40408922 -177628236 + MIR SINE MIR 96 250 -12 237 108 0 0 chr3 40409052 40409089 -177628069 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 335 181 30 45 chr3 40409669 40409868 -177627290 + AluJo SINE Alu 1 292 -9 1460 200 48 97 chr3 40410227 40410743 -177626415 + MER110 LTR ERV1 1 491 0 500 278 17 52 chr3 40411745 40411918 -177625240 + MIR SINE MIR 23 189 -73 342 215 38 0 chr3 40411974 40412053 -177625105 - MLT1I LTR MaLR -22 387 306 468 238 43 67 chr3 40412089 40412299 -177624859 - MLT1I LTR MaLR -202 207 3 1245 255 46 95 chr3 40412465 40413210 -177623948 + MER21B LTR ERV1 6 713 -150 206 307 20 30 chr3 40413228 40413329 -177623829 - L2 LINE L2 -54 3259 3160 294 222 22 11 chr3 40413463 40413553 -177623605 + Charlie8 DNA MER1_type 85 175 -2242 262 347 51 0 chr3 40413705 40413803 -177623355 - MIR SINE MIR -76 132 30 205 171 0 0 chr3 40414020 40414055 -177623103 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 668 298 46 27 chr3 40414068 40414397 -177622761 + L1MEc LINE L1 47 381 -6015 714 212 132 0 chr3 40414676 40414865 -177622293 + MER20 DNA MER1_type 1 214 -5 486 279 11 11 chr3 40414916 40415099 -177622059 + L1MEc LINE L1 683 865 -5531 421 312 213 20 chr3 40415176 40415273 -177621885 - L2 LINE L2 -35 3278 3201 198 118 0 0 chr3 40415273 40415307 -177621851 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 421 312 213 20 chr3 40415307 40415510 -177621648 - L2 LINE L2 -112 3201 2920 5040 156 26 27 chr3 40415529 40417347 -177619811 + L1MA3 LINE L1 4486 6304 -1 286 258 68 89 chr3 40417364 40417386 -177619772 - L2 LINE L2 -420 2894 2873 2246 147 5 33 chr3 40417386 40417753 -177619405 - LTR18A LTR ERVL 0 357 1 286 258 68 89 chr3 40417753 40417879 -177619279 - L2 LINE L2 -441 2873 2748 562 192 87 52 chr3 40417879 40418051 -177619107 - MER5B DNA MER1_type 0 178 1 286 258 68 89 chr3 40418051 40418091 -177619067 - L2 LINE L2 -566 2748 2709 2175 120 0 7 chr3 40418793 40419093 -177618065 + AluSx SINE Alu 1 298 -14 597 238 38 44 chr3 40419142 40419302 -177617856 + MER5A DNA MER1_type 30 188 -1 408 188 23 0 chr3 40420277 40420405 -177616753 + (TA)n Simple_repeat Simple_repeat 2 132 0 619 145 6 23 chr3 40420535 40420707 -177616451 + (TA)n Simple_repeat Simple_repeat 2 170 0 296 232 37 0 chr3 40420732 40420814 -177616344 + MER20 DNA MER1_type 131 215 -4 591 278 32 32 chr3 40421413 40421629 -177615529 - L2 LINE L2 0 3313 3098 451 237 8 25 chr3 40421693 40421811 -177615347 - L2 LINE L2 -534 2780 2665 656 305 39 13 chr3 40421815 40422048 -177615110 - L2 LINE L2 -452 2862 2624 207 277 123 0 chr3 40424160 40424225 -177612933 + MIR SINE MIR 75 147 -115 209 219 0 0 chr3 40424652 40424693 -177612465 + L2 LINE L2 3268 3308 -5 233 241 48 12 chr3 40425735 40425818 -177611340 + MIR SINE MIR 70 155 -107 1809 233 107 34 chr3 40426051 40426678 -177610480 + MER76 LTR ERV 1 673 -15 2585 52 3 0 chr3 40426766 40427074 -177610084 - AluY SINE Alu 0 311 3 295 232 11 32 chr3 40427927 40428022 -177609136 - L1ME4a LINE L1 -65 6056 5964 699 284 106 23 chr3 40428074 40428467 -177608691 - LTR33 LTR ERVL -8 513 88 704 199 7 0 chr3 40428467 40428603 -177608555 - MER58B DNA MER1_type 0 341 205 263 299 10 31 chr3 40428661 40428758 -177608400 - LTR33 LTR ERVL -424 97 3 201 195 0 0 chr3 40428888 40428929 -177608229 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 219 69 0 0 chr3 40428931 40428960 -177608198 + (CA)n Simple_repeat Simple_repeat 2 30 0 299 271 106 46 chr3 40429182 40429400 -177607758 + L1MC/D LINE L1 5631 5861 -1947 312 258 0 22 chr3 40429417 40429506 -177607652 + (TATG)n Simple_repeat Simple_repeat 2 88 0 629 308 72 14 chr3 40429770 40430118 -177607040 + MERVL LTR ERVL 2629 2996 -2489 1618 304 53 11 chr3 40430151 40430766 -177606392 + MERVL LTR ERVL 3087 3686 -1799 3825 199 60 36 chr3 40430961 40431893 -177605265 + L1M4 LINE L1 4 957 -5585 2677 137 28 19 chr3 40432000 40432424 -177604734 - MSTC LTR MaLR 0 428 1 614 213 25 0 chr3 40434347 40434469 -177602689 + L2 LINE L2 3189 3313 0 * 772 272 86 9 chr3 40434466 40434698 -177602460 + MIR SINE MIR 13 262 0 240 167 106 15 chr3 40435234 40435300 -177601858 + MLT1J LTR MaLR 110 181 -330 262 171 53 26 chr3 40435480 40435556 -177601602 + MLT1L LTR MaLR 532 609 -6 1670 194 10 10 chr3 40435916 40436210 -177600948 + AluJo SINE Alu 1 294 -18 315 254 94 7 chr3 40436228 40436366 -177600792 + LTR16A1 LTR ERVL 246 395 -62 270 200 17 0 chr3 40436501 40436561 -177600597 + LTR16A1 LTR ERVL 397 457 0 519 15 0 0 chr3 40437297 40437363 -177599795 - L1PA13 LINE L1 -4 6159 6094 23 33 0 0 chr3 40437690 40437720 -177599438 + AT_rich Low_complexity Low_complexity 1 30 0 694 289 32 8 chr3 40437748 40438001 -177599157 + MIR SINE MIR 2 260 -2 995 190 28 36 chr3 40438910 40438950 -177598208 - L1M4 LINE L1 -1426 4720 4681 2711 232 13 13 chr3 40438950 40439575 -177597583 - MLT1E2 LTR MaLR -1 625 1 995 190 28 36 chr3 40439575 40439781 -177597377 - L1M4 LINE L1 -1465 4681 4476 779 206 6 0 chr3 40439855 40440015 -177597143 - AluSp SINE Alu 0 313 153 21 0 0 0 chr3 40440027 40440048 -177597110 + AT_rich Low_complexity Low_complexity 1 21 0 202 343 14 0 chr3 40440078 40440148 -177597010 + L2 LINE L2 3202 3272 0 950 149 56 0 chr3 40440335 40440496 -177596662 - AluSp SINE Alu -24 289 120 384 236 0 0 chr3 40440532 40440604 -177596554 + L2 LINE L2 3201 3272 0 2200 125 0 19 chr3 40441175 40441486 -177595672 - AluSx SINE Alu -7 305 1 237 310 14 0 chr3 40441724 40441795 -177595363 + L2 LINE L2 3187 3258 -55 270 0 0 0 chr3 40441972 40442002 -177595156 + (TG)n Simple_repeat Simple_repeat 2 31 0 1533 163 29 11 chr3 40442002 40442274 -177594884 - AluJb SINE Alu -35 277 1 255 319 41 18 chr3 40442616 40442785 -177594373 + L1ME4a LINE L1 5533 5705 -416 5352 184 30 66 chr3 40445746 40447254 -177589904 + Charlie1a DNA MER1_type 1 1454 -1 1620 141 89 26 chr3 40448471 40448819 -177588339 + THE1C LTR MaLR 1 370 -5 1152 238 99 23 chr3 40448829 40449533 -177587625 - L1MCc LINE L1 -3614 3327 2592 263 144 75 14 chr3 40449577 40449723 -177587435 + (TA)n Simple_repeat Simple_repeat 1 155 0 469 259 77 80 chr3 40449921 40450645 -177586513 - L1MCc LINE L1 -4801 2140 1167 316 301 139 42 chr3 40450838 40451147 -177586011 + L1ME4a LINE L1 5726 6064 -57 294 323 48 21 chr3 40451222 40451408 -177585750 + L3b LINE CR1 1219 1409 -174 431 331 53 24 chr3 40451558 40451727 -177585431 + L3b LINE CR1 1405 1578 -5 790 304 104 80 chr3 40453083 40454343 -177582815 + L2 LINE L2 1965 3251 -21 252 0 0 0 chr3 40454352 40454380 -177582778 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 228 327 256 14 chr3 40454515 40454738 -177582420 - L3 LINE CR1 -653 924 648 309 301 60 7 chr3 40455039 40455275 -177581883 + MLT1L LTR MaLR 318 615 0 421 323 30 24 chr3 40455291 40455455 -177581703 - L3 LINE CR1 -1007 570 406 812 266 60 22 chr3 40455796 40456250 -177580908 - MLT1J LTR MaLR -1 510 3 912 169 38 27 chr3 40456422 40456606 -177580552 + MER5A DNA MER1_type 2 187 -2 677 189 150 7 chr3 40457213 40457366 -177579792 - MER5A DNA MER1_type -4 185 11 418 180 100 159 chr3 40458533 40458635 -177578523 - MER106A DNA MER1_type 0 236 130 1388 121 60 21 chr3 40458635 40458697 -177578461 - L1MA7 LINE L1 -1 6290 6232 189 0 0 0 chr3 40458697 40458718 -177578440 + (CA)n Simple_repeat Simple_repeat 2 22 0 1388 121 60 21 chr3 40458718 40458936 -177578222 - L1MA7 LINE L1 -59 6232 5999 418 180 100 159 chr3 40458936 40459072 -177578086 - MER106A DNA MER1_type -106 130 12 6353 72 95 0 chr3 40459119 40460187 -177576971 - L1PA8 LINE L1 -2 6170 5058 694 317 24 43 chr3 40460187 40460556 -177576602 - MLT1I LTR MaLR -41 368 7 6384 179 8 11 chr3 40461079 40461914 -177575244 - L1PA14 LINE L1 0 6161 5326 2105 122 3 7 chr3 40461914 40462208 -177574950 - AluSq SINE Alu -20 293 1 6384 179 8 11 chr3 40462208 40463430 -177573728 - L1PA14 LINE L1 -835 5326 4102 1865 174 0 7 chr3 40463905 40464209 -177572949 - AluJb SINE Alu -8 304 3 1032 272 146 28 chr3 40464844 40465310 -177571848 - L2 LINE L2 -4 3309 2791 21 0 0 0 chr3 40465468 40465489 -177571669 + AT_rich Low_complexity Low_complexity 1 21 0 318 298 21 35 chr3 40465490 40465631 -177571527 - LTR16A1 LTR ERVL 0 457 319 189 0 0 0 chr3 40465828 40465849 -177571309 + (A)n Simple_repeat Simple_repeat 1 21 0 189 0 0 0 chr3 40466236 40466257 -177570901 + (A)n Simple_repeat Simple_repeat 1 21 0 572 266 0 19 chr3 40466440 40466594 -177570564 + MIR SINE MIR 102 252 -10 369 202 45 0 chr3 40467487 40467576 -177569582 + HAL1 LINE L1 48 140 -2367 248 250 75 90 chr3 40467597 40467809 -177569349 + HAL1 LINE L1 528 736 -1771 345 249 110 17 chr3 40467813 40467986 -177569172 + HAL1 LINE L1 2026 2214 -293 261 0 0 0 chr3 40468387 40468416 -177568742 + (CA)n Simple_repeat Simple_repeat 2 30 0 825 142 68 0 chr3 40468528 40468704 -177568454 - MER53 DNA DNA -1 188 1 422 212 8 34 chr3 40469289 40469407 -177567751 + L1ME2 LINE L1 6041 6155 -9 225 0 0 0 chr3 40470086 40470111 -177567047 + (A)n Simple_repeat Simple_repeat 1 25 0 204 207 52 17 chr3 40470502 40470560 -177566598 - MIR SINE MIR 0 262 203 1649 142 10 29 chr3 40470581 40470890 -177566268 + MER50 LTR ERV1 409 711 -23 1469 209 36 13 chr3 40471066 40471453 -177565705 - L1MB8 LINE L1 -6 6172 5777 3650 151 115 99 chr3 40472345 40472730 -177564428 + L1MC3 LINE L1 6706 7083 -702 350 281 10 0 chr3 40472730 40472826 -177564332 + MLT1F1 LTR MaLR 35 131 -436 3650 151 115 99 chr3 40472826 40473408 -177563750 + L1MC3 LINE L1 7083 7785 0 1456 119 194 4 chr3 40474036 40474288 -177562870 - AluSx SINE Alu -1 301 2 315 208 0 56 chr3 40474542 40474614 -177562544 + L2 LINE L2 3246 3313 0 382 337 16 67 chr3 40474964 40475157 -177562001 + MIR3 SINE MIR 20 202 -6 630 153 36 0 chr3 40475205 40475316 -177561842 - MIR SINE MIR -44 218 104 886 209 39 0 chr3 40475500 40475682 -177561476 + MER5A DNA MER1_type 1 189 0 856 141 0 8 chr3 40475865 40475993 -177561165 - FLAM_A SINE Alu -6 127 1 212 0 21 85 chr3 40476406 40476453 -177560705 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1633 180 13 36 chr3 40476890 40477196 -177559962 + AluJo SINE Alu 1 299 -13 2379 93 0 0 chr3 40477689 40477989 -177559169 + AluSg SINE Alu 1 300 -10 350 184 40 0 chr3 40478906 40478982 -177558176 - MER103 DNA DNA -81 85 7 1204 104 5 15 chr3 40479547 40479748 -177557410 + L1MA5A LINE L1 6099 6297 0 420 153 0 14 chr3 40479784 40479856 -177557302 + Tigger2 DNA MER2_type 1 71 -2647 226 196 143 0 chr3 40479856 40479912 -177557246 - MER2 DNA MER2_type 0 345 282 * 849 246 6 0 chr3 40479890 40480065 -177557093 - MER8 DNA MER2_type -63 176 1 284 205 43 120 chr3 40480254 40480371 -177556787 - MLT1H LTR MaLR 0 549 442 499 291 42 6 chr3 40481386 40481551 -177555607 - MER5B DNA MER1_type -6 172 2 1034 178 100 59 chr3 40481697 40482018 -177555140 + MER46C DNA MER2_type 1 334 -4 626 277 32 7 chr3 40482150 40482305 -177554853 - MER91A DNA MER1_type -36 160 2 2259 113 3 0 chr3 40482687 40482998 -177554160 + AluSq SINE Alu 1 312 -1 272 317 73 24 chr3 40483027 40483150 -177554008 - MIR SINE MIR -128 134 6 539 254 7 0 chr3 40483837 40483975 -177553183 + L1ME3A LINE L1 6027 6165 -5 494 243 196 31 chr3 40484098 40484415 -177552743 + MLT1J1 LTR MaLR 71 439 -7 353 309 43 32 chr3 40484426 40484614 -177552544 + MLT1J LTR MaLR 25 214 -297 1120 269 72 48 chr3 40485291 40485789 -177551369 - MLT1H LTR MaLR -39 510 1 1879 170 13 10 chr3 40486069 40486558 -177550600 + AluJb SINE Alu 1 312 0 389 155 19 29 chr3 40486558 40486661 -177550497 + GA-rich Low_complexity Low_complexity 3 104 0 1110 226 60 103 chr3 40486813 40487250 -177549908 + MLT1H LTR MaLR 19 436 -113 2574 233 45 50 chr3 40487255 40487927 -177549231 - L1MCa LINE L1 -2252 4174 3507 2124 119 57 23 chr3 40487927 40488279 -177548879 - THE1B LTR MaLR 0 364 1 2574 233 45 50 chr3 40488279 40488667 -177548491 - L1MCa LINE L1 -2919 3507 3119 225 0 0 0 chr3 40488667 40488692 -177548466 + (TA)n Simple_repeat Simple_repeat 2 26 0 447 52 0 0 chr3 40489446 40489504 -177547654 + (TA)n Simple_repeat Simple_repeat 2 59 0 2143 136 0 7 chr3 40489504 40489813 -177547345 - AluSq SINE Alu -6 307 1 3824 224 86 29 chr3 40489822 40491946 -177545212 - L1MCa LINE L1 -3321 3105 839 256 222 14 14 chr3 40492019 40492091 -177545067 + LTR33A LTR ERVL 452 523 0 39 0 0 0 chr3 40492470 40492509 -177544649 + AT_rich Low_complexity Low_complexity 1 39 0 563 123 36 19 chr3 40492525 40492634 -177544524 + L1MC3 LINE L1 5744 5856 -488 2073 137 0 0 chr3 40492634 40492927 -177544231 + AluSq SINE Alu 1 293 -20 563 123 36 19 chr3 40492927 40492941 -177544217 + L1MC3 LINE L1 5856 5868 -476 536 234 30 60 chr3 40493657 40493824 -177543334 - LTR67 LTR ERVL -40 517 356 1459 187 26 32 chr3 40493896 40494296 -177542862 - MLT2D LTR ERVL -48 416 3 1095 241 17 4 chr3 40494445 40494816 -177542342 - LTR33 LTR ERVL -114 407 6 413 286 12 37 chr3 40494823 40494984 -177542174 - LTR67 LTR ERVL -394 163 7 4766 149 28 61 chr3 40495509 40496329 -177540829 - MER54B LTR ERVL 0 793 1 884 287 41 60 chr3 40496437 40496912 -177540246 + Charlie8 DNA MER1_type 1 460 -1957 416 313 36 0 chr3 40497157 40497269 -177539889 - L2 LINE L2 -4 3268 3153 867 275 24 9 chr3 40497481 40497775 -177539383 - MLT1I LTR MaLR -3 406 63 1995 229 32 75 chr3 40498956 40499579 -177537579 + LTR8 LTR ERV1 81 676 -15 236 305 37 12 chr3 40500016 40500098 -177537060 - L2 LINE L2 -58 3255 3172 2377 104 31 0 chr3 40500195 40500550 -177536608 + L1MA4 LINE L1 5663 6028 -272 982 140 0 12 chr3 40500551 40500715 -177536443 + L1MA4 LINE L1 6128 6289 -11 395 264 100 0 chr3 40503500 40503610 -177533548 - MLT1E2 LTR MaLR -38 588 468 1114 109 126 0 chr3 40503610 40503793 -177533365 - MER47A DNA MER2_type -130 236 31 345 258 77 67 chr3 40503858 40504157 -177533001 - L1ME4a LINE L1 -2 6119 5818 279 188 188 20 chr3 40504185 40504286 -177532872 - L1ME4a LINE L1 -12 6109 5992 468 241 116 55 chr3 40504416 40504615 -177532543 - L1ME4a LINE L1 -436 5685 5475 366 23 0 0 chr3 40505702 40505745 -177531413 + (TG)n Simple_repeat Simple_repeat 2 44 0 183 186 0 0 chr3 40506496 40506539 -177530619 + T-rich Low_complexity Low_complexity 1 43 0 964 256 152 35 chr3 40506946 40507439 -177529719 - MLT1G LTR MaLR -2 588 38 416 240 50 25 chr3 40507501 40507622 -177529536 + LTR16A1 LTR ERVL 334 457 0 470 237 7 72 chr3 40507808 40507947 -177529211 - MER5B DNA MER1_type -48 130 1 2248 108 3 0 chr3 40507951 40508256 -177528902 + AluSc SINE Alu 1 306 -3 569 177 54 68 chr3 40509218 40509365 -177527793 + MER104 DNA Tc2 36 180 0 216 0 0 0 chr3 40509627 40509651 -177527507 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1094 329 18 37 chr3 40509651 40509724 -177527434 + L1PB4 LINE L1 11 84 -6765 2272 93 0 0 chr3 40509724 40510015 -177527143 - AluSc SINE Alu -18 291 1 1094 329 18 37 chr3 40510015 40510431 -177526727 + L1PB4 LINE L1 84 491 -6358 9804 207 40 26 chr3 40510717 40515119 -177522039 + L1PB4 LINE L1 651 5116 -1732 223 263 0 25 chr3 40516351 40516431 -177520727 + A-rich Low_complexity Low_complexity 5 82 0 1683 149 78 0 chr3 40517566 40517835 -177519323 - AluSg SINE Alu -20 290 1 22 35 0 0 chr3 40519388 40519417 -177517741 + AT_rich Low_complexity Low_complexity 1 29 0 194 0 0 37 chr3 40519506 40519533 -177517625 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 229 65 0 0 chr3 40519867 40519913 -177517245 - LTR66 LTR ERVL -171 439 394 4698 174 15 13 chr3 40519942 40520883 -177516275 + L1PB4 LINE L1 5097 6039 -809 237 86 0 0 chr3 40520888 40520923 -177516235 + L1MA3 LINE L1 6271 6305 0 1688 154 43 14 chr3 40520926 40521205 -177515953 + AluSx SINE Alu 1 287 -25 2009 100 0 0 chr3 40521239 40521499 -177515659 + AluSq SINE Alu 1 260 -53 376 169 0 0 chr3 40521500 40521565 -177515593 + AluSp/q SINE Alu 232 296 -7 3849 170 54 37 chr3 40521580 40522424 -177514734 + L1PB4 LINE L1 5999 6853 -5 369 281 116 17 chr3 40522568 40522723 -177514435 + MER5A DNA MER1_type 7 189 0 2122 218 42 44 chr3 40523213 40523252 -177513906 + MLT1D LTR MaLR 1 39 -466 2115 154 61 6 chr3 40523252 40523595 -177513563 - MLT1A1 LTR MaLR -3 362 1 2122 218 42 44 chr3 40523595 40524059 -177513099 + MLT1D LTR MaLR 39 503 -2 336 285 106 50 chr3 40524692 40524871 -177512287 + LTR50 LTR ERVL 17 205 -590 251 192 39 0 chr3 40525143 40525195 -177511963 + LTR33A LTR ERVL 468 521 -2 448 301 38 48 chr3 40525404 40525613 -177511545 - LTR16A1 LTR ERVL -5 452 246 188 177 290 0 chr3 40525892 40525954 -177511204 - L2 LINE L2 -1 3271 3192 1256 217 54 28 chr3 40526320 40526361 -177510797 - MLT2E LTR ERVL -14 614 576 1911 174 80 21 chr3 40526361 40526735 -177510423 + MSTD LTR MaLR 1 396 0 1256 217 54 28 chr3 40526735 40527195 -177509963 - MLT2E LTR ERVL -52 576 1 860 226 65 37 chr3 40527597 40527814 -177509344 + MIR SINE MIR 2 224 -38 632 171 147 59 chr3 40527958 40528128 -177509030 - MER3 DNA MER1_type -24 185 1 388 209 33 27 chr3 40528751 40528873 -177508285 + L1MC4a LINE L1 5484 5603 -518 1361 217 37 167 chr3 40528903 40529740 -177507418 + MER21B LTR ERV1 6 733 -130 748 256 0 50 chr3 40529722 40529921 -177507237 + MER63A DNA MER1_type 17 205 -5 * 796 296 60 28 chr3 40529930 40530347 -177506811 + L1MC4a LINE L1 5603 6038 -83 960 243 63 28 chr3 40530637 40530921 -177506237 - MER102a DNA MER1_type -2 328 35 223 286 0 0 chr3 40532226 40532282 -177504876 - MIR SINE MIR -108 154 99 801 253 50 17 chr3 40532862 40533103 -177504055 - L2 LINE L2 0 3313 3065 1278 223 32 72 chr3 40533117 40533493 -177503665 - MLT1A2 LTR MaLR -13 361 1 2194 230 12 68 chr3 40533527 40534101 -177503057 + MLT1F LTR MaLR 1 542 0 403 332 68 23 chr3 40534103 40534323 -177502835 - L2 LINE L2 -280 3033 2804 2397 268 47 17 chr3 40534452 40535408 -177501750 + L2 LINE L2 2177 3103 -210 185 62 0 31 chr3 40535408 40535440 -177501718 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2301 135 33 28 chr3 40535450 40535812 -177501346 + THE1B LTR MaLR 1 364 0 2397 268 47 17 chr3 40535812 40535947 -177501211 + L2 LINE L2 3111 3313 0 1346 68 0 11 chr3 40536856 40537033 -177500125 - AluY SINE Alu -3 308 134 21 0 0 0 chr3 40537620 40537641 -177499517 + AT_rich Low_complexity Low_complexity 1 21 0 757 272 41 66 chr3 40537889 40538451 -177498707 + L1M4 LINE L1 4802 5349 -797 277 244 100 11 chr3 40538889 40538979 -177498179 + MLT1K LTR MaLR 26 123 -465 530 250 87 53 chr3 40539152 40539360 -177497798 + MLT1K LTR MaLR 374 588 0 732 304 8 4 chr3 40540410 40540653 -177496505 + MIR SINE MIR 19 262 0 626 305 16 5 chr3 40541268 40541458 -177495700 - MIR SINE MIR -6 256 65 260 295 74 0 chr3 40541746 40541841 -177495317 - MIR SINE MIR -59 203 102 274 305 30 23 chr3 40541931 40542062 -177495096 + Charlie8 DNA MER1_type 89 220 -2197 735 221 111 42 chr3 40542471 40542878 -177494280 + MLT1J LTR MaLR 27 428 -22 417 309 149 25 chr3 40543219 40543695 -177493463 + L2 LINE L2 1599 2133 -1181 2155 139 10 0 chr3 40743768 40744071 -177293087 - AluSx SINE Alu -6 306 1 859 227 82 82 chr3 40744079 40744271 -177292887 - L1M4 LINE L1 -869 5277 5087 1786 152 10 33 chr3 40744271 40744573 -177292585 + AluJb SINE Alu 1 295 -17 859 227 82 82 chr3 40744573 40744923 -177292235 - L1M4 LINE L1 -1059 5087 4562 2290 106 0 0 chr3 40744937 40745238 -177291920 - AluSg SINE Alu -9 301 1 612 300 85 27 chr3 40745238 40745461 -177291697 - LTR16C LTR ERVL -167 324 89 292 265 148 75 chr3 40746039 40746264 -177290894 - L1ME4a LINE L1 0 6121 5914 2032 128 3 31 chr3 40746264 40746585 -177290573 - AluSq SINE Alu -1 312 1 292 265 148 75 chr3 40746585 40746838 -177290320 - L1ME4a LINE L1 -207 5914 5608 295 275 18 28 chr3 40746960 40747069 -177290089 - MIR3 SINE MIR -5 203 96 2482 64 7 0 chr3 40747463 40747760 -177289398 - AluSp SINE Alu -14 299 1 225 361 24 0 chr3 40747870 40747953 -177289205 + LTR16C LTR ERVL 49 133 -358 427 276 43 22 chr3 40748104 40748289 -177288869 + L1MEc LINE L1 855 1043 -5353 313 188 71 24 chr3 40748379 40748464 -177288694 - MLT1J LTR MaLR -7 504 416 760 124 0 0 chr3 40748791 40748896 -177288262 + AluJo SINE Alu 35 139 -173 1831 164 3 3 chr3 40748898 40749191 -177287967 + AluSx SINE Alu 7 299 -13 2307 98 0 3 chr3 40749193 40749498 -177287660 + AluY SINE Alu 1 304 -7 1302 244 45 6 chr3 40749705 40750041 -177287117 - L1ME3 LINE L1 -30 6132 5784 646 210 8 0 chr3 40750042 40750161 -177286997 - FLAM_C SINE Alu -13 120 1 612 258 72 16 chr3 40750170 40750407 -177286751 - MLT1G1 LTR MaLR -377 213 3 362 269 88 31 chr3 40750417 40750610 -177286548 + L2 LINE L2 3105 3308 -5 2289 121 0 0 chr3 40750624 40750929 -177286229 + AluSq SINE Alu 1 305 -8 1468 122 0 108 chr3 40751140 40751436 -177285722 - AluJb SINE Alu -11 301 38 408 195 80 44 chr3 40751797 40751910 -177285248 - L1ME4a LINE L1 -33 6088 5972 561 247 93 41 chr3 40752272 40752730 -177284428 - MLT1H1 LTR MaLR -12 543 3 184 309 32 43 chr3 40752739 40752833 -177284325 + MIR SINE MIR 49 141 -121 274 228 114 66 chr3 40753517 40753602 -177283556 + L1M4 LINE L1 4275 4354 -1792 2398 79 3 7 chr3 40753602 40753907 -177283251 + AluSq SINE Alu 1 304 -9 274 228 114 66 chr3 40753907 40754093 -177283065 + L1M4 LINE L1 4354 4559 -1587 2188 106 7 3 chr3 40754097 40754400 -177282758 + AluSp SINE Alu 1 304 -9 381 274 28 0 chr3 40754481 40754587 -177282571 + L1M4 LINE L1 4001 4109 -2037 2265 122 3 0 chr3 40754968 40755279 -177281879 - AluSx SINE Alu 0 312 1 2254 100 0 10 chr3 40756706 40757005 -177280153 + AluSc SINE Alu 1 296 -13 1104 242 132 36 chr3 40757060 40757477 -177279681 - LTR16A1 LTR ERVL 0 457 1 269 149 0 21 chr3 40757733 40757780 -177279378 + MER75 DNA T2_type 459 504 0 444 256 40 88 chr3 40757834 40758061 -177279097 + HAL1 LINE L1 1881 2096 -411 22 35 0 0 chr3 40758097 40758126 -177279032 + AT_rich Low_complexity Low_complexity 1 29 0 466 281 46 78 chr3 40758194 40758411 -177278747 + LTR33A LTR ERVL 1 210 -313 1182 169 33 19 chr3 40758498 40758711 -177278447 - MER20 DNA MER1_type 0 219 4 2293 89 6 43 chr3 40758718 40759042 -177278116 + AluSx SINE Alu 1 312 0 418 287 102 0 chr3 40759146 40759362 -177277796 + HAL1 LINE L1 2270 2507 0 2061 103 31 0 chr3 40759368 40759660 -177277498 + AluY SINE Alu 1 301 -10 417 247 19 19 chr3 40760348 40760506 -177276652 + (TA)n Simple_repeat Simple_repeat 2 159 0 2220 100 19 13 chr3 40760599 40760910 -177276248 + AluSq SINE Alu 1 313 0 339 271 98 51 chr3 40760963 40761177 -177275981 - MLT1J LTR MaLR 0 511 288 301 172 0 0 chr3 40761173 40761231 -177275927 + Alu SINE Alu 242 299 -1 * 1548 197 29 0 chr3 40761483 40761784 -177275374 + AluJo SINE Alu 1 309 0 702 209 0 0 chr3 40761784 40761899 -177275259 - AluJo/FLAM SINE Alu -184 118 4 246 217 78 39 chr3 40761912 40762025 -177275133 - MLT1J LTR MaLR -310 201 47 954 200 5 25 chr3 40762029 40762229 -177274929 + L1M4 LINE L1 16 211 -6331 2667 212 68 27 chr3 40762302 40762795 -177274363 + L1M4 LINE L1 2186 2658 -3986 272 70 23 0 chr3 40762795 40762838 -177274320 + (TTA)n Simple_repeat Simple_repeat 2 45 0 2503 62 6 3 chr3 40762838 40763159 -177273999 - L1PB1 LINE L1 -10 6141 5820 2667 212 68 27 chr3 40763159 40763666 -177273492 + L1M4 LINE L1 2657 3241 -3403 433 172 21 32 chr3 40765058 40765151 -177272007 - FLAM_A SINE Alu -16 126 35 2425 216 20 5 chr3 40765163 40765802 -177271356 + L1M4 LINE L1 3253 3901 -2743 456 339 17 0 chr3 40766180 40766354 -177270804 + L2 LINE L2 2184 2360 -954 730 202 16 0 chr3 40766377 40766506 -177270652 - FLAM_A SINE Alu -2 131 1 1401 146 0 24 chr3 40766543 40766756 -177270402 + AluJb SINE Alu 1 208 -104 2926 179 29 13 chr3 40766756 40767352 -177269806 - L1MB5 LINE L1 -217 5957 5353 654 141 0 161 chr3 40767387 40767436 -177269722 - FLAM_C SINE Alu -186 126 71 2293 76 40 3 chr3 40767436 40767737 -177269421 - AluSx SINE Alu 0 312 1 654 141 0 161 chr3 40767737 40767836 -177269322 - FLAM_C SINE Alu -241 71 2 1662 200 20 55 chr3 40767837 40768296 -177268862 - L1MB5 LINE L1 -780 5366 4924 804 134 108 13 chr3 40768452 40768609 -177268549 - L1MB8 LINE L1 0 6178 6007 6606 163 75 55 chr3 40768609 40770272 -177266886 + pTR5 LTR ERV1 743 2438 0 365 194 48 48 chr3 40770278 40770381 -177266777 - L1MB8 LINE L1 -177 6001 5899 2974 254 39 21 chr3 40770408 40771176 -177265982 - MER21B LTR ERV1 -68 795 14 414 169 0 14 chr3 40771182 40771253 -177265905 - L1MB8 LINE L1 -267 5911 5842 1779 98 4 0 chr3 40771256 40771481 -177265677 + AluSq SINE Alu 10 235 -78 672 101 0 0 chr3 40771481 40771570 -177265588 + AluY SINE Alu 194 282 -29 1201 93 0 0 chr3 40771620 40771771 -177265387 - AluSq SINE Alu -26 287 137 349 227 45 11 chr3 40771772 40771860 -177265298 + MER39 LTR ERV1 613 703 -4 1743 139 0 62 chr3 40772140 40772255 -177264903 + AluJb SINE Alu 25 146 -166 2232 110 3 3 chr3 40772255 40772556 -177264602 + AluSx SINE Alu 1 301 -11 1743 139 0 62 chr3 40772556 40772728 -177264430 + AluJb SINE Alu 146 294 -18 319 263 24 102 chr3 40773284 40773607 -177263551 + MLT1J2 LTR MaLR 116 450 0 371 274 33 26 chr3 40774169 40774322 -177262836 + HAL1b LINE L1 1187 1340 -8 2257 106 0 29 chr3 40774452 40774763 -177262395 - AluSg SINE Alu -8 302 1 645 269 42 42 chr3 40774949 40775209 -177261949 - MER102a DNA MER1_type -5 325 66 2368 88 0 3 chr3 40775216 40775510 -177261648 + AluSc SINE Alu 2 294 -15 260 194 32 0 chr3 40775879 40775941 -177261217 - MIR SINE MIR -36 226 163 3055 203 10 42 chr3 40775942 40776156 -177261002 - L1M4 LINE L1 -1055 5091 4872 2206 138 0 0 chr3 40776156 40776460 -177260698 + AluSx SINE Alu 1 304 -8 3055 203 10 42 chr3 40776460 40776566 -177260592 - L1M4 LINE L1 -1274 4872 4764 2212 82 0 34 chr3 40776566 40776882 -177260276 - AluY SINE Alu 0 306 1 3055 203 10 42 chr3 40776882 40777353 -177259805 - L1M4 LINE L1 -1382 4764 4323 324 253 137 7 chr3 40777338 40777484 -177259674 - L1M4 LINE L1 -2438 3708 3544 * 2308 123 0 0 chr3 40777585 40777894 -177259264 - AluSx SINE Alu -3 309 1 310 261 43 0 chr3 40778494 40778586 -177258572 - LTR67 LTR ERVL -363 194 99 297 311 108 29 chr3 40778649 40778928 -177258230 + L2 LINE L2 2763 3060 -212 2204 112 3 3 chr3 40779252 40779548 -177257610 + AluSx SINE Alu 1 296 -16 247 353 10 39 chr3 40780404 40780506 -177256652 - L3 LINE CR1 -12 1565 1467 2412 69 3 13 chr3 40780910 40781216 -177255942 + AluSp SINE Alu 11 313 0 338 316 75 26 chr3 40782398 40782626 -177254532 - MIR SINE MIR -12 250 12 253 236 34 0 chr3 40782800 40782889 -177254269 + CT-rich Low_complexity Low_complexity 1 92 0 865 90 16 64 chr3 40782890 40782994 -177254164 + (TTCC)n Simple_repeat Simple_repeat 2 95 -85 1688 129 66 0 chr3 40782994 40783235 -177253923 - AluSx SINE Alu -55 257 1 865 90 16 64 chr3 40783235 40783318 -177253840 + (TTCC)n Simple_repeat Simple_repeat 95 180 0 341 226 97 0 chr3 40783393 40783486 -177253672 + MER92B LTR ERV1 1 102 -534 2379 95 13 0 chr3 40783504 40783808 -177253350 - AluSp SINE Alu -5 308 1 881 112 132 71 chr3 40783848 40784045 -177253113 - MER67C LTR ERV1 -248 462 254 353 178 178 17 chr3 40784070 40784122 -177253036 - MER66B LTR ERV1 -52 434 392 2296 98 0 3 chr3 40784122 40784418 -177252740 + AluSq SINE Alu 1 295 -18 353 178 178 17 chr3 40784418 40784483 -177252675 - MER66B LTR ERV1 -94 392 298 291 175 0 0 chr3 40784488 40784545 -177252613 + CT-rich Low_complexity Low_complexity 2 58 0 1015 175 26 42 chr3 40784555 40784744 -177252414 - AluJo SINE Alu -126 186 1 4821 153 58 2 chr3 40784744 40785547 -177251611 + MER6 DNA MER2_type 14 861 -4 404 32 0 81 chr3 40785572 40785634 -177251524 + MLT2B1 LTR ERVL 464 520 0 346 213 0 83 chr3 40785636 40785744 -177251414 + MER5A DNA MER1_type 13 111 -78 184 309 32 43 chr3 40786765 40786859 -177250299 - MIR SINE MIR -121 141 49 561 244 102 43 chr3 40786868 40787326 -177249832 + MLT1H1 LTR MaLR 3 543 -12 408 195 80 44 chr3 40787688 40787801 -177249357 + L1ME4a LINE L1 5972 6088 -33 1468 122 0 108 chr3 40788162 40788458 -177248700 + AluJb SINE Alu 38 301 -11 2244 122 3 0 chr3 40788669 40788973 -177248185 - AluSq SINE Alu -8 305 1 362 269 88 31 chr3 40788987 40789180 -177247978 - L2 LINE L2 -5 3308 3105 612 258 72 16 chr3 40789190 40789427 -177247731 + MLT1G1 LTR MaLR 3 213 -377 673 202 8 0 chr3 40789436 40789555 -177247603 + FLAM_C SINE Alu 1 120 -13 1302 244 45 6 chr3 40789556 40789892 -177247266 + L1ME3 LINE L1 5784 6132 -30 2307 98 0 3 chr3 40790099 40790404 -177246754 - AluY SINE Alu -7 304 1 1831 164 3 3 chr3 40790406 40790699 -177246459 - AluSx SINE Alu -13 299 7 760 124 0 0 chr3 40790701 40790806 -177246352 - AluJo SINE Alu -173 139 35 313 188 71 24 chr3 40791133 40791218 -177245940 + MLT1J LTR MaLR 416 504 -7 427 276 43 22 chr3 40791308 40791493 -177245665 - L1MEc LINE L1 -5353 1043 855 225 361 24 0 chr3 40791644 40791727 -177245431 - LTR16C LTR ERVL -358 133 49 2482 64 7 0 chr3 40791837 40792134 -177245024 + AluSp SINE Alu 1 299 -14 295 275 18 28 chr3 40792528 40792637 -177244521 + MIR3 SINE MIR 96 203 -5 292 265 148 75 chr3 40792759 40793012 -177244146 + L1ME4a LINE L1 5608 5841 -280 2032 128 3 31 chr3 40793012 40793333 -177243825 + AluSq SINE Alu 1 312 -1 292 265 148 75 chr3 40793333 40793558 -177243600 + L1ME4a LINE L1 5841 6121 0 1071 282 92 34 chr3 40794136 40794359 -177242799 + LTR16C LTR ERVL 89 344 -147 2117 121 13 3 chr3 40794359 40794666 -177242492 + AluSx SINE Alu 1 310 -2 1071 282 92 34 chr3 40794666 40794821 -177242337 + LTR16C LTR ERVL 344 489 -2 663 266 44 18 chr3 40795434 40795663 -177241495 + L1MA9 LINE L1 6040 6274 -38 1535 170 0 24 chr3 40795675 40795997 -177241161 + AluSx SINE Alu 1 315 0 477 84 0 0 chr3 40796722 40796793 -177240365 + (GGGGA)n Simple_repeat Simple_repeat 3 73 0 1227 111 106 0 chr3 40796795 40797003 -177240155 + L1PA14 LINE L1 5932 6161 0 601 178 20 0 chr3 40797068 40797169 -177239989 - MER94 DNA DNA -29 105 3 343 282 169 0 chr3 40797384 40797508 -177239650 - MIR3 SINE MIR -6 202 58 378 239 0 11 chr3 40797530 40797618 -177239540 + MER5A DNA MER1_type 9 95 -94 1827 209 36 58 chr3 40797635 40798103 -177239055 - LTR40c LTR ERVL -5 460 3 2371 68 0 0 chr3 40798127 40798405 -177238753 - AluSq SINE Alu -17 296 19 1458 150 44 4 chr3 40798406 40798633 -177238525 - AluSx SINE Alu -76 236 1 181 0 69 0 chr3 40798652 40798681 -177238477 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 492 204 232 0 chr3 40799355 40799497 -177237661 + MER5A DNA MER1_type 9 183 -6 1144 289 48 50 chr3 40799643 40800099 -177237059 + MLT1J LTR MaLR 24 478 -33 405 266 50 7 chr3 40800688 40800827 -177236331 - MIR SINE MIR -50 212 68 304 285 124 29 chr3 40801047 40801184 -177235974 - MIR3 SINE MIR -23 185 36 1830 151 14 0 chr3 40801487 40801765 -177235393 - AluJb SINE Alu -7 305 24 25 31 0 0 chr3 40802036 40802068 -177235090 + AT_rich Low_complexity Low_complexity 1 32 0 1500 159 32 62 chr3 40802073 40802381 -177234777 + AluJo SINE Alu 1 299 -13 270 310 20 41 chr3 40803037 40803234 -177233924 + L1ME3 LINE L1 4243 4435 -1711 418 298 28 33 chr3 40803244 40803459 -177233699 + L1ME3 LINE L1 5735 5948 -214 1858 151 7 0 chr3 40803757 40804031 -177233127 + AluJb SINE Alu 5 283 -29 204 40 0 0 chr3 40804031 40804056 -177233102 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 212 214 0 0 chr3 40804287 40804329 -177232829 + MIR3 SINE MIR 156 197 -11 24 32 0 0 chr3 40804786 40804817 -177232341 + AT_rich Low_complexity Low_complexity 1 31 0 2130 97 36 0 chr3 40804818 40805097 -177232061 - AluSg SINE Alu -21 289 1 850 206 60 14 chr3 40805097 40805315 -177231843 + L1MC5 LINE L1 7698 7925 -36 315 0 0 0 chr3 40805638 40805673 -177231485 + (CA)n Simple_repeat Simple_repeat 2 36 0 2263 89 0 10 chr3 40805675 40805966 -177231192 - AluSx SINE Alu -24 288 1 213 244 0 0 chr3 40805973 40806014 -177231144 - L2 LINE L2 -17 3296 3256 335 252 101 8 chr3 40806206 40806275 -177230883 + MER5A DNA MER1_type 45 106 -83 1858 151 22 26 chr3 40806275 40806586 -177230572 - AluSx SINE Alu -2 310 1 335 252 101 8 chr3 40806586 40806635 -177230523 + MER5A DNA MER1_type 106 174 -15 235 235 71 12 chr3 40806783 40806868 -177230290 - MIR SINE MIR -124 138 49 2319 99 0 0 chr3 40807022 40807314 -177229844 + AluSq SINE Alu 1 292 -21 356 177 20 7 chr3 40807330 40807477 -177229681 + (TA)n Simple_repeat Simple_repeat 2 150 0 1855 167 3 6 chr3 40808722 40809033 -177228125 + AluSq SINE Alu 4 313 0 1734 185 3 0 chr3 40809150 40809442 -177227716 - AluSx SINE Alu -17 295 3 4496 133 63 51 chr3 40809525 40810796 -177226362 - pTR5 LTR ERV1 -125 2212 6 241 313 0 48 chr3 40811087 40811170 -177225988 + L3 LINE CR1 1480 1558 -19 1511 166 6 113 chr3 40811956 40812075 -177225083 + AluJo SINE Alu 1 131 -171 262 0 53 0 chr3 40812075 40812113 -177225045 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 1511 166 6 113 chr3 40812113 40812319 -177224839 + AluJo SINE Alu 131 291 -11 806 218 0 6 chr3 40812321 40812477 -177224681 + FRAM SINE Alu 1 154 -22 206 238 0 0 chr3 40812559 40812601 -177224557 + (CA)n Simple_repeat Simple_repeat 2 43 0 4417 253 68 38 chr3 40812651 40814170 -177222988 - L2 LINE L2 0 3313 1733 1915 123 39 0 chr3 40814170 40814454 -177222704 + AluSx SINE Alu 1 295 -17 4417 253 68 38 chr3 40814454 40814762 -177222396 - L2 LINE L2 -1580 1733 1436 777 237 19 14 chr3 40814762 40814977 -177222181 + HAL1 LINE L1 1431 1646 -861 791 224 141 9 chr3 40814984 40815400 -177221758 + LTR33 LTR ERVL 1 521 0 250 257 43 14 chr3 40815402 40815472 -177221686 + HAL1 LINE L1 1652 1723 -784 726 271 101 49 chr3 40815475 40815713 -177221445 + HAL1 LINE L1 1775 2036 -471 2457 93 0 0 chr3 40815713 40816025 -177221133 + AluSx SINE Alu 1 312 0 726 271 101 49 chr3 40816025 40816114 -177221044 + HAL1 LINE L1 2036 2119 -388 186 238 0 0 chr3 40816340 40816382 -177220776 + MIR SINE MIR 81 122 -140 214 114 29 0 chr3 40816411 40816446 -177220712 + L2 LINE L2 3219 3254 -18 216 0 0 0 chr3 40816866 40816890 -177220268 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1719 146 32 0 chr3 40816892 40817145 -177220013 - AluJb SINE Alu -32 280 20 815 256 44 24 chr3 40817236 40817486 -177219672 - MIR SINE MIR -1 261 7 33 25 0 0 chr3 40818459 40818499 -177218659 + GC_rich Low_complexity Low_complexity 1 40 0 180 0 0 0 chr3 40819896 40819916 -177217242 + (TTG)n Simple_repeat Simple_repeat 2 21 0 625 226 47 42 chr3 40820111 40820301 -177216857 + MIR SINE MIR 14 204 -58 21 71 0 0 chr3 40820448 40820490 -177216668 + AT_rich Low_complexity Low_complexity 1 42 0 1865 162 7 3 chr3 40821233 40821366 -177215792 + AluJb SINE Alu 1 132 -180 2363 97 3 0 chr3 40821366 40821665 -177215493 + AluSx SINE Alu 1 300 -12 1865 162 7 3 chr3 40821665 40821850 -177215308 + AluJb SINE Alu 132 312 0 208 246 15 31 chr3 40822101 40822166 -177214992 - MIR SINE MIR -119 143 80 1993 103 48 0 chr3 40822597 40822899 -177214259 - AluSp SINE Alu 0 316 2 267 204 40 164 chr3 40823053 40823086 -177214072 - MIR SINE MIR -114 148 112 1888 166 0 10 chr3 40823086 40823382 -177213776 - AluJb SINE Alu -19 293 1 267 204 40 164 chr3 40823382 40823462 -177213696 - MIR SINE MIR -150 112 56 2117 112 14 0 chr3 40823462 40823758 -177213400 + AluSx SINE Alu 1 300 -12 267 204 40 164 chr3 40823758 40823795 -177213363 - MIR SINE MIR -206 56 16 206 292 108 8 chr3 40824040 40824160 -177212998 + MIR3 SINE MIR 76 207 -1 1241 200 9 5 chr3 40824797 40825017 -177212141 - MER58A DNA MER1_type -3 221 1 1420 176 3 48 chr3 40825017 40825344 -177211814 - AluJo SINE Alu 0 320 7 245 229 0 0 chr3 40825429 40825477 -177211681 + L2 LINE L2 3264 3311 -2 214 208 83 104 chr3 40825754 40825777 -177211381 + MIR3 SINE MIR 66 88 -120 2177 129 0 3 chr3 40825777 40826079 -177211079 + AluSx SINE Alu 1 301 -11 214 208 83 104 chr3 40826079 40826151 -177211007 + MIR3 SINE MIR 88 159 -49 315 288 38 38 chr3 40826174 40826306 -177210852 - L2 LINE L2 0 3272 3141 231 198 63 72 chr3 40826669 40826742 -177210416 - L1ME4a LINE L1 -5 6116 6043 1442 191 62 17 chr3 40826742 40827030 -177210128 + AluJo SINE Alu 1 301 -11 231 198 63 72 chr3 40827030 40827067 -177210091 - L1ME4a LINE L1 -78 6043 6007 1640 156 45 14 chr3 40827074 40827362 -177209796 - AluJo SINE Alu -1 311 15 254 175 0 0 chr3 40827630 40827670 -177209488 - L1ME4a LINE L1 -462 5659 5620 2223 110 0 3 chr3 40827721 40828022 -177209136 - AluY SINE Alu -11 300 1 2358 93 6 0 chr3 40828336 40828647 -177208511 - AluSp SINE Alu 0 313 1 2128 117 7 0 chr3 40828917 40829216 -177207942 - AluSx SINE Alu -11 301 1 1742 161 18 4 chr3 40829830 40830109 -177207049 + AluJb SINE Alu 1 283 -29 762 180 31 0 chr3 40830182 40830310 -177206848 + FLAM_A SINE Alu 1 132 -1 2442 71 3 3 chr3 40830511 40830808 -177206350 - AluSp SINE Alu -16 297 1 234 91 0 0 chr3 40830930 40830963 -177206195 + (T)n Simple_repeat Simple_repeat 1 33 0 515 182 136 0 chr3 40830963 40831073 -177206085 + MER58C DNA MER1_type 79 203 -12 1374 135 5 5 chr3 40831136 40831336 -177205822 - AluJb SINE Alu -27 285 86 2232 109 0 25 chr3 40831817 40832137 -177205021 - AluSq SINE Alu 0 313 2 1548 208 40 0 chr3 40832538 40832836 -177204322 + AluJo SINE Alu 1 310 -2 284 315 116 28 chr3 40833090 40833341 -177203817 - L2 LINE L2 -181 3091 2819 448 239 56 46 chr3 40833432 40833629 -177203529 - L1MC4 LINE L1 -15 8027 7829 2208 112 3 0 chr3 40834213 40834508 -177202650 + AluSx SINE Alu 11 306 -6 228 244 179 0 chr3 40834820 40834898 -177202260 + MIR3 SINE MIR 114 205 -3 389 204 111 0 chr3 40835540 40835648 -177201510 + MIR SINE MIR 60 179 -83 1465 201 0 7 chr3 40836018 40836291 -177200867 - AluJb SINE Alu -12 300 30 2205 67 34 0 chr3 40836377 40836679 -177200479 + AluSc SINE Alu 1 311 0 303 261 169 15 chr3 40836737 40836867 -177200291 - L2 LINE L2 -52 3261 3112 588 191 27 0 chr3 40836921 40837031 -177200127 + FLAM_C SINE Alu 10 122 -21 214 192 19 0 chr3 40837077 40837129 -177200029 + (TGAA)n Simple_repeat Simple_repeat 3 55 0 429 292 44 0 chr3 40837129 40837266 -177199892 - L2 LINE L2 -250 3063 2921 207 311 169 24 chr3 40837323 40837619 -177199539 - L2 LINE L2 -961 2353 2015 633 175 35 0 chr3 40838412 40838526 -177198632 - FLAM_C SINE Alu -15 118 1 926 179 19 0 chr3 40838530 40838692 -177198466 + MER5A DNA MER1_type 2 166 -23 2423 88 3 0 chr3 40838915 40839222 -177197936 - AluSp SINE Alu -5 308 1 404 138 126 0 chr3 40839553 40839640 -177197518 - L1MA8 LINE L1 -2 6289 6192 25 0 0 0 chr3 40840021 40840046 -177197112 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr3 40840307 40840332 -177196826 + AT_rich Low_complexity Low_complexity 1 25 0 2427 144 35 56 chr3 40840489 40840907 -177196251 - L1MA8 LINE L1 0 6291 5885 1864 135 39 30 chr3 40840907 40841241 -177195917 - MER1B DNA MER1_type 0 337 1 2427 144 35 56 chr3 40841241 40841342 -177195816 - L1MA8 LINE L1 -406 5885 5783 219 241 25 25 chr3 40841362 40841441 -177195717 + (CATATA)n Simple_repeat Simple_repeat 6 84 0 867 103 34 62 chr3 40841441 40841587 -177195571 - L1MA8 LINE L1 -502 5789 5648 2150 97 4 4 chr3 40842088 40842388 -177194770 - AluSg SINE Alu 0 300 1 234 229 131 16 chr3 40842640 40842701 -177194457 + MLT1K LTR MaLR 182 249 -339 2321 115 0 0 chr3 40842921 40843225 -177193933 - AluSx SINE Alu -8 304 1 251 203 31 16 chr3 40843269 40843333 -177193825 + MLT1K LTR MaLR 514 578 -10 1914 89 100 4 chr3 40844592 40844862 -177192296 - AluSg SINE Alu -14 296 1 1693 159 23 27 chr3 40845267 40845568 -177191590 - AluJb SINE Alu -12 300 1 2344 85 0 29 chr3 40845645 40845961 -177191197 + AluSg1 SINE Alu 1 298 -11 758 218 10 42 chr3 40846186 40846379 -177190779 + MER5A DNA MER1_type 2 188 -1 2073 122 10 0 chr3 40846646 40846942 -177190216 + AluSg SINE Alu 1 299 -11 1617 153 55 0 chr3 40846950 40847225 -177189933 + AluJo SINE Alu 1 290 -22 240 280 148 37 chr3 40847321 40847564 -177189594 - L1ME LINE L1 -267 5854 5585 2253 106 0 3 chr3 40848650 40848953 -177188205 - AluSq SINE Alu -11 302 1 2147 84 0 18 chr3 40849151 40849465 -177187693 + AluY SINE Alu 6 314 0 2369 57 14 0 chr3 40849480 40849784 -177187374 + AluY SINE Alu 1 308 0 2287 81 0 3 chr3 40850600 40850896 -177186262 - AluY SINE Alu -16 295 1 21 0 0 0 chr3 40850896 40850917 -177186241 + AT_rich Low_complexity Low_complexity 1 21 0 512 164 138 17 chr3 40851068 40851184 -177185974 - FLAM_A SINE Alu 0 133 4 861 40 49 18 chr3 40851214 40851442 -177185716 + (TA)n Simple_repeat Simple_repeat 1 235 0 21 36 0 0 chr3 40851499 40851527 -177185631 + AT_rich Low_complexity Low_complexity 1 28 0 30 69 0 0 chr3 40852144 40852202 -177184956 + AT_rich Low_complexity Low_complexity 1 58 0 23 0 0 0 chr3 40853588 40853611 -177183547 + AT_rich Low_complexity Low_complexity 1 23 0 2117 123 10 7 chr3 40855139 40855441 -177181717 + AluSx SINE Alu 1 303 -9 1831 178 14 0 chr3 40855455 40855748 -177181410 + AluJb SINE Alu 3 299 -13 1213 139 0 60 chr3 40855831 40856046 -177181112 - AluJb SINE Alu -24 288 87 180 0 0 0 chr3 40856807 40856827 -177180331 + (TA)n Simple_repeat Simple_repeat 1 20 0 2168 114 7 7 chr3 40856833 40857131 -177180027 - AluSx SINE Alu -14 298 1 1039 148 120 10 chr3 40857284 40857493 -177179665 + MER46A DNA MER2_type 5 236 0 698 232 140 51 chr3 40857941 40858256 -177178902 - L2 LINE L2 -337 2977 2635 1016 159 67 0 chr3 40858435 40858630 -177178528 - MER3 DNA MER1_type -1 208 1 23 33 0 0 chr3 40859072 40859102 -177178056 + AT_rich Low_complexity Low_complexity 1 30 0 606 242 130 37 chr3 40859189 40859404 -177177754 - MIR SINE MIR -13 249 15 367 326 81 5 chr3 40859988 40860238 -177176920 - L1MC/D LINE L1 -348 5773 5494 25 51 0 0 chr3 40860490 40860529 -177176629 + AT_rich Low_complexity Low_complexity 1 39 0 1657 181 84 35 chr3 40860895 40861171 -177175987 - L1MB7 LINE L1 -2 6182 5921 2285 102 26 0 chr3 40861171 40861475 -177175683 - AluSx SINE Alu 0 312 1 1657 181 84 35 chr3 40861475 40861814 -177175344 - L1MB7 LINE L1 -263 5921 5482 307 247 124 0 chr3 40861815 40861912 -177175246 - HAL1 LINE L1 -2322 185 77 1028 118 0 0 chr3 40862006 40862142 -177175016 - AluSx SINE Alu -19 291 156 850 107 0 0 chr3 40862142 40862254 -177174904 - AluSx SINE Alu -200 112 1 225 0 0 0 chr3 40862635 40862660 -177174498 + (TG)n Simple_repeat Simple_repeat 1 25 0 186 43 0 0 chr3 40863228 40863251 -177173907 + (TA)n Simple_repeat Simple_repeat 2 24 0 1727 140 89 0 chr3 40863405 40863720 -177173438 + MER2 DNA MER2_type 1 343 -1 22 0 0 0 chr3 40863738 40863760 -177173398 + AT_rich Low_complexity Low_complexity 1 22 0 2061 91 18 4 chr3 40864197 40864473 -177172685 + AluSg SINE Alu 17 296 -14 830 225 116 20 chr3 40864540 40864886 -177172272 - L1ME3A LINE L1 -10 6160 5782 1246 207 52 65 chr3 40864911 40865102 -177172056 - MLT1D LTR MaLR 0 505 320 2430 72 3 0 chr3 40865102 40865409 -177171749 - AluY SINE Alu -3 308 1 1246 207 52 65 chr3 40865409 40865603 -177171555 - MLT1D LTR MaLR -185 320 125 6809 151 73 43 chr3 40865603 40865817 -177171341 - L1MCa LINE L1 -4828 1598 1392 2053 148 0 0 chr3 40865817 40866115 -177171043 - AluJb SINE Alu -14 298 1 6809 151 73 43 chr3 40866115 40867364 -177169794 - L1MCa LINE L1 -5034 1392 85 2377 91 0 0 chr3 40867364 40867662 -177169496 - AluSq SINE Alu -11 302 5 6809 151 73 43 chr3 40867662 40867723 -177169435 - L1MCa LINE L1 -6341 85 27 499 187 81 16 chr3 40867725 40867848 -177169310 - MLT1D LTR MaLR -374 131 1 528 232 34 39 chr3 40867848 40868055 -177169103 - L1ME3A LINE L1 -412 5750 5545 4281 173 48 6 chr3 40868056 40868942 -177168216 + L1MB7 LINE L1 5215 6139 -45 2452 71 0 0 chr3 40868942 40869237 -177167921 + AluY SINE Alu 1 295 -16 4281 173 48 6 chr3 40869237 40869259 -177167899 + L1MB7 LINE L1 6139 6159 -25 677 242 56 0 chr3 40869287 40869502 -177167656 - L1ME3A LINE L1 -619 5545 5319 2405 92 7 0 chr3 40869528 40869833 -177167325 - AluSp SINE Alu -6 307 1 304 175 0 0 chr3 40869926 40869983 -177167175 + MLT1L LTR MaLR 537 593 -22 31 58 0 0 chr3 40870765 40870817 -177166341 + AT_rich Low_complexity Low_complexity 1 52 0 180 0 0 0 chr3 40871939 40871959 -177165199 + (T)n Simple_repeat Simple_repeat 1 20 0 30 0 0 0 chr3 40872972 40873002 -177164156 + AT_rich Low_complexity Low_complexity 1 30 0 215 320 13 13 chr3 40874003 40874078 -177163080 + MIR3 SINE MIR 133 207 -1 482 173 169 121 chr3 40874412 40874833 -177162325 - Charlie2 DNA MER1_type -1 2861 2421 1021 164 170 51 chr3 40874862 40875101 -177162057 - Charlie2 DNA MER1_type -634 2228 1942 2090 115 0 26 chr3 40875101 40875406 -177161752 - AluSg SINE Alu -13 297 1 1021 164 170 51 chr3 40875406 40875477 -177161681 - Charlie2 DNA MER1_type -920 1942 1881 756 244 60 47 chr3 40875515 40875834 -177161324 + MER46C DNA MER2_type 1 323 -15 819 245 43 80 chr3 40875846 40875919 -177161239 - Charlie2 DNA MER1_type -2467 315 241 1962 144 128 8 chr3 40875919 40876301 -177160857 + MSTA LTR MaLR 1 428 0 819 245 43 80 chr3 40876301 40876554 -177160604 - Charlie2 DNA MER1_type -2541 241 1 844 146 0 29 chr3 40876582 40876719 -177160439 - FLAM_C SINE Alu 0 133 1 228 114 29 0 chr3 40877786 40877821 -177159337 - L2 LINE L2 -18 3254 3219 210 271 0 57 chr3 40877850 40877920 -177159238 - MIR SINE MIR -140 122 57 648 256 107 52 chr3 40878138 40878207 -177158951 - HAL1 LINE L1 -408 2099 2035 2410 96 0 0 chr3 40878207 40878519 -177158639 - AluSx SINE Alu 0 312 1 648 256 107 52 chr3 40878519 40878757 -177158401 - HAL1 LINE L1 -472 2035 1775 707 229 144 11 chr3 40878832 40879248 -177157910 - LTR33 LTR ERVL 0 521 1 704 237 19 14 chr3 40879255 40879470 -177157688 - HAL1 LINE L1 -861 1646 1431 4777 256 66 38 chr3 40879470 40879778 -177157380 + L2 LINE L2 1436 1734 -1579 1890 123 39 0 chr3 40879778 40880062 -177157096 - AluSx SINE Alu -17 295 1 4777 256 66 38 chr3 40880062 40881584 -177155574 + L2 LINE L2 1734 3313 0 206 238 0 0 chr3 40881634 40881676 -177155482 + (TG)n Simple_repeat Simple_repeat 2 43 0 771 239 0 7 chr3 40881758 40881913 -177155245 - AluJo/FRAM SINE Alu -12 290 137 1513 169 6 113 chr3 40881916 40882122 -177155036 - AluJb SINE Alu -11 291 131 262 0 53 0 chr3 40882122 40882160 -177154998 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 1513 169 6 113 chr3 40882160 40882279 -177154879 - AluJb SINE Alu -171 131 1 271 313 0 48 chr3 40883065 40883148 -177154010 - L3 LINE CR1 -19 1558 1480 4015 136 56 87 chr3 40883438 40884707 -177152451 + pTR5 LTR ERV1 6 589 -125 1738 191 0 0 chr3 40884788 40885082 -177152076 + AluSx SINE Alu 2 295 -17 1866 167 3 6 chr3 40885199 40885510 -177151648 - AluSq SINE Alu 0 313 4 356 177 20 7 chr3 40886755 40886902 -177150256 + (TA)n Simple_repeat Simple_repeat 1 149 0 2295 99 0 0 chr3 40886918 40887210 -177149948 - AluSq SINE Alu -21 292 1 270 235 71 12 chr3 40887364 40887449 -177149709 + MIR SINE MIR 49 138 -124 191 216 27 0 chr3 40887477 40887514 -177149644 + L2 LINE L2 3219 3256 -16 373 252 101 8 chr3 40887597 40887646 -177149512 - MER5A DNA MER1_type -15 174 131 1873 164 10 13 chr3 40887646 40887957 -177149201 + AluSx SINE Alu 1 310 -2 373 252 101 8 chr3 40887957 40888026 -177149132 - MER5A DNA MER1_type -58 131 45 235 301 250 41 chr3 40888068 40888264 -177148894 + MIR SINE MIR 20 256 -6 2226 89 0 10 chr3 40888266 40888557 -177148601 + AluSx SINE Alu 1 288 -24 315 0 0 0 chr3 40888559 40888594 -177148564 + (TG)n Simple_repeat Simple_repeat 2 36 0 772 200 55 30 chr3 40888916 40889134 -177148024 - L1MC5 LINE L1 -36 7925 7699 2126 113 33 0 chr3 40889134 40889434 -177147724 + AluSg SINE Alu 1 310 0 772 200 55 30 chr3 40889434 40889450 -177147708 - L1MC5 LINE L1 -262 7699 7685 227 214 0 0 chr3 40889902 40889944 -177147214 - MIR3 SINE MIR -11 197 156 204 40 0 0 chr3 40890175 40890200 -177146958 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1849 151 7 0 chr3 40890200 40890474 -177146684 - AluJb SINE Alu -29 283 5 353 298 28 33 chr3 40890772 40890987 -177146171 - L1ME3 LINE L1 -214 5948 5735 369 310 20 41 chr3 40890997 40891194 -177145964 - L1ME3 LINE L1 -1711 4435 4243 1528 159 32 62 chr3 40891850 40892158 -177145000 - AluJo SINE Alu -13 299 1 25 31 0 0 chr3 40892163 40892195 -177144963 + AT_rich Low_complexity Low_complexity 1 32 0 1832 151 14 0 chr3 40892472 40892750 -177144408 + AluJb SINE Alu 24 305 -7 351 285 124 29 chr3 40893053 40893190 -177143968 + MIR3 SINE MIR 36 185 -23 448 268 74 5 chr3 40893363 40893549 -177143609 + MIR SINE MIR 4 212 -50 1003 289 48 50 chr3 40894138 40894594 -177142564 - MLT1J LTR MaLR -33 478 24 548 204 232 0 chr3 40894740 40894882 -177142276 - MER5A DNA MER1_type -6 183 9 181 0 69 0 chr3 40895556 40895585 -177141573 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1462 150 44 4 chr3 40895604 40895831 -177141327 + AluSx SINE Alu 1 236 -76 2380 68 0 0 chr3 40895832 40896111 -177141047 + AluSq SINE Alu 19 297 -16 1827 209 36 58 chr3 40896135 40896603 -177140555 + LTR40c LTR ERVL 3 460 -5 378 239 0 11 chr3 40896620 40896708 -177140450 - MER5A DNA MER1_type -94 95 9 343 282 169 0 chr3 40896730 40896854 -177140304 + MIR3 SINE MIR 58 202 -6 601 178 20 0 chr3 40897069 40897170 -177139988 + MER94 DNA DNA 3 105 -29 1227 111 106 0 chr3 40897235 40897443 -177139715 - L1PA14 LINE L1 0 6161 5932 201 94 0 0 chr3 40898242 40898274 -177138884 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1534 170 0 24 chr3 40898276 40898564 -177138594 - AluSx SINE Alu -31 281 1 663 266 44 18 chr3 40898576 40898805 -177138353 - L1MA9 LINE L1 -38 6274 6040 280 225 108 42 chr3 40899418 40899538 -177137620 - LTR16C LTR ERVL -2 489 362 2027 111 36 0 chr3 40899592 40899872 -177137286 - AluSx SINE Alu -22 290 1 1405 198 44 26 chr3 40899872 40900211 -177136947 - L1MB7 LINE L1 -358 5826 5482 231 247 124 0 chr3 40900212 40900309 -177136849 - HAL1 LINE L1 -2322 185 77 1031 118 0 0 chr3 40900403 40900539 -177136619 - AluSx SINE Alu -19 291 156 865 107 0 0 chr3 40900539 40900651 -177136507 - AluSx SINE Alu -201 112 1 225 0 0 0 chr3 40901032 40901057 -177136101 + (TG)n Simple_repeat Simple_repeat 1 25 0 186 43 0 0 chr3 40901625 40901648 -177135510 + (TA)n Simple_repeat Simple_repeat 2 24 0 1774 140 89 0 chr3 40901802 40902117 -177135041 + MER2 DNA MER2_type 1 343 -1 22 0 0 0 chr3 40902135 40902157 -177135001 + AT_rich Low_complexity Low_complexity 1 22 0 2083 91 18 4 chr3 40902594 40902870 -177134288 + AluSg SINE Alu 17 296 -14 961 217 118 23 chr3 40902937 40903283 -177133875 - L1ME3A LINE L1 -10 6160 5782 1359 207 52 65 chr3 40903308 40903499 -177133659 - MLT1D LTR MaLR 0 505 320 2239 83 0 13 chr3 40903499 40903811 -177133347 - AluY SINE Alu -3 308 1 1359 207 52 65 chr3 40903811 40904005 -177133153 - MLT1D LTR MaLR -185 320 125 7482 151 73 43 chr3 40904005 40904219 -177132939 - L1MCa LINE L1 -4828 1598 1392 2066 148 0 0 chr3 40904219 40904517 -177132641 - AluJb SINE Alu -14 298 1 7482 151 73 43 chr3 40904517 40905766 -177131392 - L1MCa LINE L1 -5034 1392 85 2399 91 0 0 chr3 40905766 40906064 -177131094 - AluSq SINE Alu -11 302 5 7482 151 73 43 chr3 40906064 40906125 -177131033 - L1MCa LINE L1 -6341 85 27 554 187 81 16 chr3 40906127 40906250 -177130908 - MLT1D LTR MaLR -374 131 1 598 232 34 39 chr3 40906250 40906457 -177130701 - L1ME3A LINE L1 -412 5750 5545 4609 175 49 1 chr3 40906458 40907343 -177129815 + L1MB7 LINE L1 5215 6141 -43 2364 94 0 0 chr3 40907344 40907641 -177129517 + AluY SINE Alu 1 297 -14 198 0 0 0 chr3 40907647 40907669 -177129489 + (TA)n Simple_repeat Simple_repeat 1 22 0 1212 139 0 60 chr3 40908430 40908645 -177128513 + AluJb SINE Alu 87 288 -24 1521 187 10 20 chr3 40908729 40909029 -177128129 - AluJb SINE Alu -13 299 3 2123 122 10 7 chr3 40909043 40909346 -177127812 - AluSx SINE Alu -8 304 1 225 0 0 0 chr3 40910906 40910931 -177126227 + (A)n Simple_repeat Simple_repeat 1 25 0 2280 100 3 0 chr3 40911066 40911365 -177125793 + AluSp SINE Alu 5 304 -9 270 0 0 0 chr3 40911375 40911405 -177125753 + (T)n Simple_repeat Simple_repeat 1 30 0 553 237 141 12 chr3 40911446 40911695 -177125463 + L1M4 LINE L1 4001 4281 -1865 269 81 0 0 chr3 40911700 40911737 -177125421 + AluSx SINE Alu 1 37 -262 924 109 0 14 chr3 40911737 40911875 -177125283 - AluSg/x SINE Alu -8 302 167 2030 127 0 0 chr3 40911875 40912159 -177124999 + AluSx SINE Alu 26 309 -3 837 219 85 99 chr3 40912193 40912237 -177124921 + L1M4 LINE L1 4323 4366 -1780 2398 79 3 7 chr3 40912237 40912542 -177124616 + AluSq SINE Alu 1 304 -9 837 219 85 99 chr3 40912542 40912732 -177124426 + L1M4 LINE L1 4366 4557 -1589 2472 80 0 0 chr3 40912732 40913033 -177124125 + AluSg SINE Alu 1 301 -9 837 219 85 99 chr3 40913033 40913397 -177123761 + L1M4 LINE L1 4557 5084 -1062 1801 149 10 33 chr3 40913397 40913699 -177123459 - AluJb SINE Alu -17 295 1 837 219 85 99 chr3 40913699 40913891 -177123267 + L1M4 LINE L1 5084 5277 -869 2128 142 10 0 chr3 40913899 40914202 -177122956 + AluSx SINE Alu 1 306 -6 198 143 0 0 chr3 40914204 40914239 -177122919 + (GGGA)n Simple_repeat Simple_repeat 3 37 0 2840 159 29 29 chr3 40914575 40915097 -177122061 - L1MCa LINE L1 -5763 663 142 1990 158 0 7 chr3 40915120 40915424 -177121734 - AluSp SINE Alu -11 302 1 1969 232 137 70 chr3 40915425 40916150 -177121008 - HAL1 LINE L1 -1263 1244 430 831 175 4 118 chr3 40916150 40916350 -177120808 + MER20 DNA MER1_type 1 169 -50 2377 98 0 0 chr3 40916350 40916645 -177120513 + AluSx SINE Alu 1 295 -17 831 175 4 118 chr3 40916645 40916690 -177120468 + MER20 DNA MER1_type 169 218 -1 1969 232 137 70 chr3 40916690 40916981 -177120177 - HAL1 LINE L1 -2077 430 160 1300 103 0 0 chr3 40916984 40917149 -177120009 - AluSg/x SINE Alu -14 298 134 2349 90 0 13 chr3 40917149 40917450 -177119708 - AluSx SINE Alu -15 297 1 1405 198 44 26 chr3 40917450 40917789 -177119369 - L1MB7 LINE L1 -358 5826 5482 231 247 124 0 chr3 40917790 40917887 -177119271 - HAL1 LINE L1 -2322 185 77 1031 118 0 0 chr3 40917981 40918117 -177119041 - AluSx SINE Alu -19 291 156 865 107 0 0 chr3 40918117 40918229 -177118929 - AluSx SINE Alu -201 112 1 225 0 0 0 chr3 40918610 40918635 -177118523 + (TG)n Simple_repeat Simple_repeat 1 25 0 186 43 0 0 chr3 40919203 40919226 -177117932 + (TA)n Simple_repeat Simple_repeat 2 24 0 1774 140 89 0 chr3 40919380 40919695 -177117463 + MER2 DNA MER2_type 1 343 -1 22 0 0 0 chr3 40919713 40919735 -177117423 + AT_rich Low_complexity Low_complexity 1 22 0 2083 91 18 4 chr3 40920172 40920448 -177116710 + AluSg SINE Alu 17 296 -14 967 225 116 20 chr3 40920515 40920861 -177116297 - L1ME3A LINE L1 -10 6160 5782 1382 205 52 65 chr3 40920886 40921077 -177116081 - MLT1D LTR MaLR 0 505 320 2527 65 0 0 chr3 40921077 40921385 -177115773 - AluY SINE Alu -3 308 1 1382 205 52 65 chr3 40921385 40921579 -177115579 - MLT1D LTR MaLR -185 320 125 7482 151 73 43 chr3 40921579 40921793 -177115365 - L1MCa LINE L1 -4828 1598 1392 2066 148 0 0 chr3 40921793 40922091 -177115067 - AluJb SINE Alu -14 298 1 7482 151 73 43 chr3 40922091 40923340 -177113818 - L1MCa LINE L1 -5034 1392 85 2399 91 0 0 chr3 40923340 40923638 -177113520 - AluSq SINE Alu -11 302 5 7482 151 73 43 chr3 40923638 40923699 -177113459 - L1MCa LINE L1 -6341 85 27 554 187 81 16 chr3 40923701 40923824 -177113334 - MLT1D LTR MaLR -374 131 1 598 232 34 39 chr3 40923824 40924031 -177113127 - L1ME3A LINE L1 -412 5750 5545 4609 175 49 1 chr3 40924032 40924917 -177112241 + L1MB7 LINE L1 5215 6141 -43 2312 77 0 7 chr3 40924918 40925205 -177111953 + AluSc SINE Alu 1 285 -24 760 234 61 0 chr3 40925264 40925478 -177111680 - L1ME3A LINE L1 -619 5545 5319 2421 92 7 0 chr3 40925504 40925809 -177111349 - AluSp SINE Alu -6 307 1 201 39 0 0 chr3 40925836 40925862 -177111296 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 23 0 0 0 chr3 40925978 40926001 -177111157 + AT_rich Low_complexity Low_complexity 1 23 0 2298 84 0 3 chr3 40926820 40927116 -177110042 - AluY SINE Alu -16 295 1 21 0 0 0 chr3 40927116 40927137 -177110021 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 40927433 40927457 -177109701 + AT_rich Low_complexity Low_complexity 1 24 0 33 73 0 0 chr3 40927669 40927737 -177109421 + GC_rich Low_complexity Low_complexity 1 68 0 460 289 11 68 chr3 40927926 40927974 -177109184 - L1MC5 LINE L1 -82 7879 7830 2517 63 0 3 chr3 40927974 40928275 -177108883 - AluY SINE Alu -11 300 1 460 289 11 68 chr3 40928275 40928416 -177108742 - L1MC5 LINE L1 -131 7830 7701 22 23 0 45 chr3 40928420 40928445 -177108713 + AT_rich Low_complexity Low_complexity 1 26 -16 357 82 0 0 chr3 40928445 40928494 -177108664 + (TA)n Simple_repeat Simple_repeat 1 49 0 2478 94 0 0 chr3 40928494 40928803 -177108355 - AluSq SINE Alu -4 309 1 22 23 0 45 chr3 40928803 40928820 -177108338 + AT_rich Low_complexity Low_complexity 24 42 0 599 250 128 30 chr3 40928980 40929345 -177107813 - Tigger8 DNA MER2_type -143 523 46 2545 167 49 18 chr3 40929560 40930069 -177107089 + L1MB7 LINE L1 5652 6176 -8 738 240 54 50 chr3 40930969 40931026 -177106132 + MER58A DNA MER1_type 1 56 -2364 1847 158 3 14 chr3 40931026 40931323 -177105835 - AluJb SINE Alu -17 295 2 738 240 54 50 chr3 40931323 40931486 -177105672 + MER58A DNA MER1_type 56 222 -2 1796 212 147 11 chr3 40934108 40934585 -177102573 - MER34 LTR ERV1 0 542 1 2283 101 10 0 chr3 40935931 40936228 -177100930 - AluSx SINE Alu -2 310 11 7147 165 49 115 chr3 40937334 40937352 -177099806 + L1MB2 LINE L1 3176 3194 -2977 1374 160 33 118 chr3 40937352 40937521 -177099637 + AluJb SINE Alu 1 130 -182 1934 137 27 10 chr3 40937521 40937820 -177099338 + AluSx SINE Alu 6 309 -3 1374 160 33 118 chr3 40937820 40937982 -177099176 + AluJb SINE Alu 130 304 -8 7147 165 49 115 chr3 40937982 40938496 -177098662 + L1MB2 LINE L1 3194 3741 -2430 2057 129 24 0 chr3 40938496 40938783 -177098375 - AluSx SINE Alu -18 294 1 7147 165 49 115 chr3 40938783 40939780 -177097378 + L1MB2 LINE L1 3741 4803 -1368 721 176 64 0 chr3 40939780 40939905 -177097253 + FAM SINE Alu 33 165 -20 7147 165 49 115 chr3 40939905 40941442 -177095716 + L1MB2 LINE L1 4803 6144 -27 231 36 0 0 chr3 40941450 40941478 -177095680 + (CA)n Simple_repeat Simple_repeat 1 28 0 1606 172 89 3 chr3 40942447 40942750 -177094408 - MER58B DNA MER1_type 0 341 13 550 207 173 0 chr3 40942781 40942931 -177094227 + MER5A DNA MER1_type 14 189 0 1253 204 112 30 chr3 40943071 40943390 -177093768 + L1MC2 LINE L1 5935 6289 -55 2232 107 3 7 chr3 40943390 40943699 -177093459 - AluSx SINE Alu -4 308 1 1253 204 112 30 chr3 40943699 40943746 -177093412 + L1MC2 LINE L1 6289 6331 -13 1174 89 0 0 chr3 40943853 40943999 -177093159 + AluY SINE Alu 148 293 -18 281 247 65 17 chr3 40945808 40945959 -177091199 + MIR SINE MIR 37 192 -62 1840 161 92 52 chr3 40946225 40946628 -177090530 - MSTC LTR MaLR -7 421 3 574 206 35 28 chr3 40947039 40947180 -177089978 - MER5A DNA MER1_type -43 146 5 936 171 0 38 chr3 40947234 40947358 -177089800 + MER58B DNA MER1_type 190 308 -2112 2332 95 0 0 chr3 40947358 40947663 -177089495 - AluSc SINE Alu -4 305 1 936 171 0 38 chr3 40947663 40947696 -177089462 + MER58B DNA MER1_type 308 341 0 248 299 188 0 chr3 40947910 40948028 -177089130 - MIR SINE MIR -63 145 43 1556 207 149 41 chr3 40948082 40948569 -177088589 - MLT1F LTR MaLR 0 542 6 2382 71 0 0 chr3 40949063 40949371 -177087787 + AluY SINE Alu 1 308 -3 834 192 136 5 chr3 40949972 40950170 -177086988 - MER58A DNA MER1_type 0 224 1 311 361 31 8 chr3 40950194 40950324 -177086834 + L2 LINE L2 3136 3268 -4 290 200 12 62 chr3 40950858 40950938 -177086220 - MIR SINE MIR -92 170 95 2003 128 7 0 chr3 40950976 40951272 -177085886 + AluSx SINE Alu 1 298 -14 322 204 45 114 chr3 40951272 40951347 -177085811 + MIR SINE MIR 90 154 -108 2298 82 0 10 chr3 40951347 40951651 -177085507 + AluSx SINE Alu 1 301 -11 322 204 45 114 chr3 40951651 40951707 -177085451 + MIR SINE MIR 154 212 -50 199 175 75 0 chr3 40951748 40951788 -177085370 + L2 LINE L2 3270 3312 -1 526 183 240 0 chr3 40952216 40952391 -177084767 - MIR SINE MIR -37 225 9 238 315 71 55 chr3 40952492 40952619 -177084539 + MIR3 SINE MIR 11 139 -69 2009 120 0 16 chr3 40953076 40953384 -177083774 - AluSx SINE Alu -9 303 1 1567 168 15 4 chr3 40954005 40954279 -177082879 + AluJo SINE Alu 10 286 -26 1790 132 15 0 chr3 40954557 40954830 -177082328 + AluSx SINE Alu 1 277 -35 2150 103 0 10 chr3 40955449 40955761 -177081397 + AluSq SINE Alu 1 309 -4 964 118 0 22 chr3 40956660 40956796 -177080362 + FLAM_C SINE Alu 1 133 0 333 291 48 75 chr3 40956832 40957214 -177079944 - L2 LINE L2 -183 3089 2719 345 338 31 25 chr3 40957354 40957448 -177079710 + L2 LINE L2 3149 3246 -67 2057 149 0 0 chr3 40957448 40957757 -177079401 - AluSx SINE Alu -3 309 1 345 338 31 25 chr3 40957757 40957822 -177079336 + L2 LINE L2 3246 3309 -4 2036 123 0 0 chr3 40957847 40958158 -177079000 - AluSx SINE Alu 0 311 1 382 217 60 0 chr3 40958323 40958406 -177078752 - MIR SINE MIR -111 151 64 538 211 0 10 chr3 40958520 40958624 -177078534 - FLAM_C SINE Alu -40 103 1 1250 133 10 0 chr3 40959020 40959223 -177077935 - L1MA2 LINE L1 0 6304 6100 491 235 7 29 chr3 40959223 40959359 -177077799 + LTR37B LTR ERV1 3 135 -333 * 626 221 0 15 chr3 40959351 40959482 -177077676 - MER58B DNA MER1_type -9 332 204 3126 178 56 14 chr3 40959492 40960124 -177077034 - MER39 LTR ERV1 0 707 1 668 167 12 68 chr3 40960125 40960213 -177076945 - MER58B DNA MER1_type -147 194 118 2337 84 0 3 chr3 40960213 40960512 -177076646 + AluSp SINE Alu 1 298 -15 668 167 12 68 chr3 40960512 40960585 -177076573 - MER58B DNA MER1_type -223 118 42 402 222 96 89 chr3 40960632 40960902 -177076256 + LTR37B LTR ERV1 197 468 0 373 323 123 7 chr3 40961337 40961492 -177075666 + MIR3 SINE MIR 21 193 -15 1054 178 186 35 chr3 40961588 40961846 -177075312 + AluJo SINE Alu 1 297 -5 759 242 68 89 chr3 40963362 40963820 -177073338 - L1MC4 LINE L1 -5 8037 7590 267 267 13 13 chr3 40963879 40963954 -177073204 - L1MC4 LINE L1 -629 7413 7339 324 210 0 16 chr3 40964892 40964954 -177072204 + MER20 DNA MER1_type 1 61 -158 890 53 0 0 chr3 40964954 40965067 -177072091 - AluY SINE Alu -13 298 186 306 106 106 0 chr3 40965069 40965116 -177072042 + MER20 DNA MER1_type 54 105 -114 1231 216 183 49 chr3 40965739 40966187 -177070971 - MLT1H LTR MaLR 0 549 42 320 287 128 32 chr3 40966202 40966390 -177070768 - L1P5 LINE L1 -346 5808 5603 1039 83 0 0 chr3 40966650 40966782 -177070376 + AluSg SINE Alu 2 133 -177 1998 122 7 3 chr3 40966782 40967078 -177070080 + AluSq SINE Alu 1 297 -16 425 345 61 27 chr3 40967078 40967371 -177069787 - L2 LINE L2 -788 2526 2224 1133 143 22 0 chr3 40967413 40967595 -177069563 - MER5A DNA MER1_type 0 189 4 705 209 29 0 chr3 40968295 40968434 -177068724 + MIR SINE MIR 102 244 -18 2154 114 3 0 chr3 40969023 40969331 -177067827 - AluSx SINE Alu -3 309 1 561 202 151 1 chr3 40970668 40970831 -177066327 + L1ME3 LINE L1 5727 5912 -250 1606 207 30 3 chr3 40970838 40971138 -177066020 + MER58B DNA MER1_type 5 312 -29 392 148 171 11 chr3 40971135 40971223 -177065935 - MLT1D LTR MaLR -133 372 271 * 457 224 61 0 chr3 40971251 40971349 -177065809 - MLT1D LTR MaLR -330 175 72 2540 208 57 80 chr3 40971385 40971591 -177065567 - MER21B LTR ERV1 -60 803 594 1232 171 78 91 chr3 40971591 40972042 -177065116 - LTR56 LTR ERV1 0 445 1 2540 208 57 80 chr3 40972042 40972558 -177064600 - MER21B LTR ERV1 -269 594 98 392 208 0 94 chr3 40972669 40972775 -177064383 - MER21B LTR ERV1 -767 96 1 526 167 0 0 chr3 40972783 40972861 -177064297 - MLT1D LTR MaLR -426 79 2 1717 140 18 22 chr3 40972861 40973139 -177064019 + MER61B LTR ERV1 1 277 -148 354 183 0 0 chr3 40973134 40973194 -177063964 - AluJ SINE Alu -109 193 134 * 772 170 0 15 chr3 40973194 40973329 -177063829 - AluJ SINE Alu -169 133 1 560 216 81 20 chr3 40973329 40973477 -177063681 + MER5A DNA MER1_type 33 189 0 609 118 0 0 chr3 40973542 40973627 -177063531 - MER61B LTR ERV1 -29 396 312 733 104 0 0 chr3 40973633 40973729 -177063429 + AluJb SINE Alu 198 293 -19 1744 167 10 0 chr3 40974205 40974498 -177062660 - AluSx SINE Alu -14 298 3 2358 97 0 0 chr3 40974841 40975151 -177062007 - AluSx SINE Alu -2 310 1 2557 42 0 3 chr3 40975739 40976047 -177061111 - AluY SINE Alu -4 307 1 482 275 90 0 chr3 40976809 40976998 -177060160 + MIR SINE MIR 57 262 0 889 258 55 24 chr3 40977202 40977493 -177059665 + L1MC4a LINE L1 5525 5824 -1984 2093 110 7 7 chr3 40977493 40977801 -177059357 + AluSq SINE Alu 1 308 -5 329 335 90 30 chr3 40977896 40978096 -177059062 + L1MC4a LINE L1 5987 6198 -1610 728 174 116 6 chr3 40978401 40978573 -177058585 - AluSx SINE Alu -120 192 2 309 58 0 94 chr3 40979435 40979488 -177057670 - AluSc SINE Alu -3 296 252 6857 69 32 0 chr3 40980367 40981333 -177055825 - L1P LINE L1 -1102 5044 4048 982 283 78 34 chr3 40981669 40982087 -177055071 + LTR16A LTR ERVL 1 443 -7 542 276 128 10 chr3 40982643 40982846 -177054312 - MIR SINE MIR -20 242 16 341 233 9 95 chr3 40982879 40982995 -177054163 + MER5A DNA MER1_type 5 110 -79 442 74 0 0 chr3 40983005 40983082 -177054076 + Alu SINE Alu 230 306 0 430 253 30 0 chr3 40983411 40983510 -177053648 + MIR SINE MIR 83 184 -78 336 252 65 65 chr3 40983862 40984001 -177053157 + MIR3 SINE MIR 10 148 -60 1080 140 16 86 chr3 40984056 40984234 -177052924 - AluSg/x SINE Alu -1 311 153 2698 31 0 0 chr3 40984234 40984552 -177052606 - AluYb8 SINE Alu 0 318 1 1080 140 16 86 chr3 40984552 40984616 -177052542 - AluSg/x SINE Alu -159 153 86 308 336 9 9 chr3 40984617 40984730 -177052428 + L1ME3 LINE L1 5584 5696 -466 236 241 0 0 chr3 40984754 40984808 -177052350 + GA-rich Low_complexity Low_complexity 3 56 0 1171 211 70 102 chr3 40984808 40985249 -177051909 + L1ME3 LINE L1 5732 6158 -4 39 38 0 0 chr3 40985499 40985552 -177051606 + GC_rich Low_complexity Low_complexity 1 53 0 1783 171 0 3 chr3 40987711 40988016 -177049142 - AluJo SINE Alu -8 304 1 2108 99 10 19 chr3 40988280 40988593 -177048565 + AluSp SINE Alu 1 310 -3 310 288 182 33 chr3 40988808 40989291 -177047867 - L1ME4a LINE L1 -3 6118 5564 478 279 162 0 chr3 40989363 40989517 -177047641 - MIR SINE MIR -16 246 68 1003 189 31 5 chr3 40989921 40990112 -177047046 - MER3 DNA MER1_type -5 204 9 689 226 93 56 chr3 40991859 40992129 -177045029 + MER46C DNA MER2_type 1 280 -58 2270 83 0 3 chr3 40992162 40992462 -177044696 + AluSg SINE Alu 1 299 -11 521 262 129 25 chr3 40992532 40992953 -177044205 - L1MC4a LINE L1 -340 5781 5547 1772 142 3 41 chr3 40992955 40993271 -177043887 + AluSx SINE Alu 1 304 -8 1160 223 72 23 chr3 40993383 40993688 -177043470 - L1ME3A LINE L1 -1 6169 5850 862 181 70 0 chr3 40993723 40993894 -177043264 - MER5A DNA MER1_type -6 183 1 186 43 0 0 chr3 40994021 40994044 -177043114 + (T)n Simple_repeat Simple_repeat 1 23 0 533 265 0 24 chr3 40994111 40994400 -177042758 + C-rich Low_complexity Low_complexity 1 282 0 2320 79 0 10 chr3 40994872 40995176 -177041982 + AluSg SINE Alu 1 301 -9 2203 107 0 0 chr3 40995256 40995555 -177041603 + AluSx SINE Alu 2 300 -12 247 275 77 22 chr3 40995602 40995693 -177041465 - MIR SINE MIR -77 131 36 272 244 35 12 chr3 40995758 40995844 -177041314 + L1ME4a LINE L1 5531 5618 -503 230 200 13 13 chr3 40996330 40996405 -177040753 + L1ME4a LINE L1 6047 6121 0 1063 152 0 17 chr3 40996935 40997113 -177040045 + FRAM SINE Alu 1 173 -3 3570 122 63 4 chr3 40997441 40998091 -177039067 + L1MA8 LINE L1 5216 5897 -394 234 213 0 0 chr3 40998211 40998258 -177038900 + L1ME4a LINE L1 6061 6107 -14 23 0 0 0 chr3 40998277 40998300 -177038858 + AT_rich Low_complexity Low_complexity 1 23 0 334 170 0 150 chr3 40998846 40998946 -177038212 - MER20B DNA MER1_type -696 87 3 1529 134 40 22 chr3 40999167 40999442 -177037716 - AluJb SINE Alu -32 280 1 765 168 96 39 chr3 40999443 40999651 -177037507 - L1M2 LINE L1 -800 5491 5272 205 86 86 29 chr3 40999667 40999737 -177037421 + C-rich Low_complexity Low_complexity 6 79 0 216 118 26 66 chr3 40999737 40999813 -177037345 + (CCGCG)n Simple_repeat Simple_repeat 5 77 0 1562 142 0 0 chr3 40999979 41000212 -177036946 - AluSx SINE Alu -79 233 1 421 190 70 0 chr3 41000212 41000312 -177036846 - L1MC/D LINE L1 -2371 5437 5331 1180 126 0 0 chr3 41000312 41000479 -177036679 - AluSc SINE Alu -9 300 134 1139 212 109 11 chr3 41000488 41000662 -177036496 + Charlie1 DNA MER1_type 2009 2165 -596 1669 136 26 26 chr3 41000662 41000971 -177036187 + AluJb SINE Alu 1 309 -3 1139 212 109 11 chr3 41000971 41001145 -177036013 + Charlie1 DNA MER1_type 2165 2391 -370 345 263 0 0 chr3 41001601 41001677 -177035481 - MERVL LTR ERVL -1698 3787 3712 438 314 47 50 chr3 41001746 41002045 -177035113 - LTR16C LTR ERVL -105 386 89 2137 88 3 10 chr3 41002500 41002797 -177034361 + AluSg SINE Alu 1 295 -15 1737 85 152 0 chr3 41004565 41004835 -177032323 - LTR7 LTR ERV1 -139 311 1 2165 83 3 35 chr3 41004981 41005295 -177031863 + AluSp SINE Alu 2 305 -8 1546 178 41 77 chr3 41005508 41005874 -177031284 - MLT1A2 LTR MaLR -2 372 20 1439 162 16 65 chr3 41007639 41007948 -177029210 + AluJb SINE Alu 1 294 -18 280 284 142 14 chr3 41008236 41008454 -177028704 + L1MC4a LINE L1 4005 4250 -1896 1971 143 3 0 chr3 41008457 41008758 -177028400 + AluSq SINE Alu 4 305 -8 1557 184 47 71 chr3 41008972 41009353 -177027805 - MLT1A2 LTR MaLR -2 372 1 1860 145 0 28 chr3 41009392 41009710 -177027448 - AluJo SINE Alu -3 309 1 260 230 58 0 chr3 41009724 41009811 -177027347 - HAL1 LINE L1 -341 2166 2075 246 172 17 0 chr3 41009834 41009892 -177027266 + T-rich Low_complexity Low_complexity 1 59 0 433 254 14 21 chr3 41010264 41010406 -177026752 - HAL1 LINE L1 -677 1830 1690 3671 235 124 65 chr3 41010480 41011111 -177026047 - HAL1 LINE L1 -622 1885 1292 1653 138 98 7 chr3 41011111 41011387 -177025771 - AluJb SINE Alu -11 301 1 3671 235 124 65 chr3 41011387 41012112 -177025046 - HAL1 LINE L1 -1215 1292 611 836 175 4 118 chr3 41012112 41012312 -177024846 + MER20 DNA MER1_type 1 169 -50 2247 98 0 0 chr3 41012312 41012607 -177024551 + AluSx SINE Alu 1 295 -17 836 175 4 118 chr3 41012607 41012652 -177024506 + MER20 DNA MER1_type 169 218 -1 3671 235 124 65 chr3 41012652 41012946 -177024212 - HAL1 LINE L1 -1896 611 336 2269 86 0 13 chr3 41012946 41013111 -177024047 - AluSx SINE Alu -14 298 137 2197 94 0 13 chr3 41013111 41013410 -177023748 - AluSg SINE Alu -15 295 1 2269 86 0 13 chr3 41013410 41013546 -177023612 - AluSx SINE Alu -175 137 1 3671 235 124 65 chr3 41013546 41013664 -177023494 - HAL1 LINE L1 -2171 336 12 280 305 38 0 chr3 41013802 41013933 -177023225 + L1MC4a LINE L1 4907 5042 -1104 1857 134 10 24 chr3 41014013 41014311 -177022847 + AluJo SINE Alu 1 294 -18 1942 120 6 49 chr3 41014482 41014808 -177022350 + AluSx SINE Alu 1 312 0 913 165 77 0 chr3 41014940 41015110 -177022048 + MER5A DNA MER1_type 1 183 -6 1185 220 72 23 chr3 41015145 41015450 -177021708 + L1ME3A LINE L1 5850 6169 -1 1851 139 3 41 chr3 41015562 41015878 -177021280 - AluSx SINE Alu -8 304 1 521 253 131 23 chr3 41015880 41016228 -177020930 + L1MC4a LINE L1 5547 5781 -340 2333 67 0 7 chr3 41016369 41016669 -177020489 - AluSc SINE Alu -11 298 1 768 305 92 68 chr3 41017808 41018724 -177018434 + L2 LINE L2 2288 3246 -26 224 287 69 35 chr3 41018805 41018892 -177018266 - MIR SINE MIR -78 130 41 413 258 214 22 chr3 41019392 41019621 -177017537 + MER102b DNA MER1_type 69 341 0 1050 133 0 6 chr3 41019680 41019845 -177017313 + AluSg/x SINE Alu 134 297 -15 232 309 25 0 chr3 41020792 41020873 -177016285 - L2 LINE L2 -192 3080 2998 270 324 110 23 chr3 41021240 41021459 -177015699 + MARNA DNA Mariner 279 516 -70 1015 203 13 47 chr3 41021726 41021907 -177015251 - MER58A DNA MER1_type -2196 224 50 1849 112 52 0 chr3 41021907 41022195 -177014963 + AluSx SINE Alu 1 302 0 1015 203 13 47 chr3 41022195 41022244 -177014914 - MER58A DNA MER1_type -2370 50 1 22 35 0 0 chr3 41022295 41022324 -177014834 + AT_rich Low_complexity Low_complexity 1 29 0 237 261 46 15 chr3 41022429 41022494 -177014664 - MIR SINE MIR -114 148 82 282 189 14 14 chr3 41022752 41022826 -177014332 - Charlie8 DNA MER1_type -1906 511 438 * 352 279 0 36 chr3 41022825 41022936 -177014222 - Charlie8 DNA MER1_type -2224 193 87 693 194 47 52 chr3 41023313 41023500 -177013658 + MER5A DNA MER1_type 4 189 0 689 226 79 48 chr3 41023516 41023566 -177013592 - MER46C DNA MER2_type -1 337 290 2228 93 3 0 chr3 41023566 41023866 -177013292 - AluSp SINE Alu -12 301 1 689 226 79 48 chr3 41023866 41024170 -177012988 - MER46C DNA MER2_type -48 290 1 2103 116 7 7 chr3 41024647 41024957 -177012201 - AluSx SINE Alu 0 312 3 524 280 21 28 chr3 41024971 41025114 -177012044 - MIR SINE MIR -13 249 108 1258 265 120 19 chr3 41025785 41026211 -177010947 - MLT1J LTR MaLR -42 469 1 423 230 86 3 chr3 41026380 41026488 -177010670 - MER5A DNA MER1_type -72 106 1 862 112 22 8 chr3 41026707 41026841 -177010317 + AluJo SINE Alu 1 136 -176 2152 114 3 0 chr3 41026841 41027148 -177010010 + AluY SINE Alu 1 308 -3 291 221 182 0 chr3 41027403 41027480 -177009678 + MLT1J LTR MaLR 4 94 -417 441 277 157 19 chr3 41027551 41027818 -177009340 + MLT1J LTR MaLR 203 506 -5 2068 115 3 13 chr3 41028050 41028364 -177008794 - AluSx SINE Alu 0 312 2 294 253 12 12 chr3 41029161 41029244 -177007914 + L1ME LINE L1 5690 5772 -349 1823 164 0 3 chr3 41031075 41031380 -177005778 - AluJo SINE Alu -8 304 1 2173 95 0 16 chr3 41031645 41031950 -177005208 + AluSq SINE Alu 1 300 -13 323 302 0 28 chr3 41031977 41032083 -177005075 + Charlie8 DNA MER1_type 143 245 -2172 21 36 0 0 chr3 41033277 41033305 -177003853 + AT_rich Low_complexity Low_complexity 1 28 0 2245 81 0 3 chr3 41033351 41033647 -177003511 + AluSc SINE Alu 1 295 -14 1741 161 0 20 chr3 41033698 41034003 -177003155 + AluJb SINE Alu 1 299 -13 328 305 40 63 chr3 41036458 41036681 -177000477 + MLT1K LTR MaLR 13 230 -358 766 187 30 74 chr3 41036730 41036933 -177000225 - MIR SINE MIR -5 257 64 206 162 0 27 chr3 41036973 41037010 -177000148 + L2 LINE L2 3263 3298 -15 1360 183 29 42 chr3 41037095 41037407 -176999751 - AluJo SINE Alu -4 308 1 293 85 0 0 chr3 41037407 41037454 -176999704 - L1MA7 LINE L1 -45 6246 6200 1632 161 50 7 chr3 41037466 41037765 -176999393 - AluJb SINE Alu 0 312 1 233 296 0 14 chr3 41037894 41037965 -176999193 + MLT1L LTR MaLR 432 501 -114 3122 191 95 9 chr3 41038520 41039235 -176997923 + L1ME1 LINE L1 5382 6161 -5 295 328 91 27 chr3 41039269 41039455 -176997703 + L2 LINE L2 3070 3267 -5 361 189 54 0 chr3 41039840 41039914 -176997244 + MER116 DNA Mariner 2 79 -1 2167 87 10 3 chr3 41039969 41040267 -176996891 + AluSx SINE Alu 1 300 -12 247 275 77 22 chr3 41040314 41040405 -176996753 - MIR SINE MIR -77 131 36 272 244 35 12 chr3 41040470 41040556 -176996602 + L1ME4a LINE L1 5531 5618 -503 230 200 13 13 chr3 41041041 41041116 -176996042 + L1ME4a LINE L1 6047 6121 0 1063 152 0 17 chr3 41041646 41041824 -176995334 + FRAM SINE Alu 1 173 -3 4396 128 63 7 chr3 41042161 41042971 -176994187 + L1MA8 LINE L1 5216 6061 -230 2428 115 15 38 chr3 41043199 41043598 -176993560 - MLT1B LTR MaLR 0 390 1 239 242 16 0 chr3 41043633 41043695 -176993463 + CT-rich Low_complexity Low_complexity 2 64 0 210 37 0 0 chr3 41044539 41044566 -176992592 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 314 244 61 10 chr3 41044683 41044832 -176992326 - MIR SINE MIR -59 203 16 2306 94 3 0 chr3 41044879 41045186 -176991972 - AluSx SINE Alu -4 308 1 199 254 68 34 chr3 41045376 41045435 -176991723 - L2 LINE L2 -8 3305 3245 370 213 13 0 chr3 41045463 41045538 -176991620 - MIR SINE MIR -11 251 176 1024 231 97 64 chr3 41045548 41046082 -176991076 + MLT1F LTR MaLR 6 592 -3 296 269 8 82 chr3 41046094 41046228 -176990930 - MIR SINE MIR -103 159 36 538 305 133 50 chr3 41046482 41046761 -176990397 + L2 LINE L2 2955 3256 -16 217 366 0 0 chr3 41046782 41046853 -176990305 - L2 LINE L2 -219 3053 2983 365 264 52 69 chr3 41046853 41047027 -176990131 + MER5B DNA MER1_type 2 172 -6 225 224 69 0 chr3 41047069 41047127 -176990031 - MIR SINE MIR -25 237 176 256 289 26 0 chr3 41047456 41047532 -176989626 - L2 LINE L2 -3 3310 3233 757 265 87 17 chr3 41047954 41048184 -176988974 - MIR SINE MIR -3 259 14 2314 60 0 0 chr3 41048651 41048986 -176988172 + AluY SINE Alu 1 335 0 1784 218 3 11 chr3 41049073 41049426 -176987732 - MLT1A2 LTR MaLR -24 350 1 704 283 40 31 chr3 41049426 41049649 -176987509 + MLT1K LTR MaLR 23 247 -341 1507 189 37 53 chr3 41049657 41050037 -176987121 + MLT1B LTR MaLR 1 374 -16 598 197 175 44 chr3 41050096 41050279 -176986879 + MLT1K LTR MaLR 323 529 -59 1536 178 47 10 chr3 41050279 41050577 -176986581 - AluJo SINE Alu -3 309 1 829 176 0 0 chr3 41050591 41050722 -176986436 - FLAM_A SINE Alu -2 131 1 257 114 0 0 chr3 41051333 41051368 -176985790 - MER5A DNA MER1_type -1 188 154 796 177 71 0 chr3 41051409 41051550 -176985608 - MER5A DNA MER1_type -38 151 1 436 208 0 13 chr3 41052000 41052077 -176985081 - MER5A DNA MER1_type 0 189 114 1502 153 80 4 chr3 41052182 41052457 -176984701 - AluJb SINE Alu -16 296 1 868 202 0 11 chr3 41052583 41052761 -176984397 - FRAM SINE Alu 0 176 1 905 158 50 104 chr3 41052835 41053010 -176984148 - AluJo SINE Alu 0 312 152 2358 56 23 0 chr3 41053010 41053314 -176983844 - AluY SINE Alu 0 311 1 905 158 50 104 chr3 41053314 41053378 -176983780 - AluJo SINE Alu -160 152 86 308 336 9 9 chr3 41053379 41053492 -176983666 + L1ME3 LINE L1 5584 5696 -466 236 241 0 0 chr3 41053516 41053570 -176983588 + GA-rich Low_complexity Low_complexity 3 56 0 1171 211 70 102 chr3 41053570 41054011 -176983147 + L1ME3 LINE L1 5732 6158 -4 39 38 0 0 chr3 41054261 41054314 -176982844 + GC_rich Low_complexity Low_complexity 1 53 0 820 157 116 25 chr3 41056061 41056259 -176980899 + AluJo SINE Alu 87 302 -10 2151 100 0 7 chr3 41057163 41057463 -176979695 - AluSc SINE Alu -11 298 1 1611 152 10 30 chr3 41057470 41057767 -176979391 - AluJo SINE Alu -18 294 4 288 290 100 46 chr3 41057784 41058009 -176979149 - MIR SINE MIR -2 260 21 3346 145 48 66 chr3 41058043 41058692 -176978466 + L1MB8 LINE L1 5425 6084 -94 2004 111 0 4 chr3 41058692 41058972 -176978186 + AluSx SINE Alu 2 280 -32 192 40 0 0 chr3 41058972 41058997 -176978161 + (CAA)n Simple_repeat Simple_repeat 3 27 0 3346 145 48 66 chr3 41058997 41059092 -176978066 + L1MB8 LINE L1 6082 6157 -21 970 243 83 99 chr3 41059494 41059920 -176977238 - MER41C LTR ERV1 0 554 138 2319 71 0 3 chr3 41059920 41060214 -176976944 + AluSc SINE Alu 1 293 -16 970 243 83 99 chr3 41060214 41060350 -176976808 - MER41C LTR ERV1 -416 138 1 229 329 82 12 chr3 41060659 41060744 -176976414 - L2 LINE L2 -19 3253 3163 361 283 163 70 chr3 41060845 41061169 -176975989 - L2 LINE L2 0 3313 2932 1694 106 36 18 chr3 41061169 41061444 -176975714 + AluJb SINE Alu 1 280 -32 361 283 163 70 chr3 41061444 41061578 -176975580 - L2 LINE L2 -381 2932 2812 334 170 0 150 chr3 41061665 41061765 -176975393 + MER20B DNA MER1_type 3 87 -696 23 0 0 0 chr3 41062311 41062334 -176974824 + AT_rich Low_complexity Low_complexity 1 23 0 260 207 207 0 chr3 41062353 41062435 -176974723 - L1ME4a LINE L1 -14 6107 6009 2043 117 13 0 chr3 41062488 41062786 -176974372 - AluSx SINE Alu -10 302 1 2131 108 16 3 chr3 41062854 41063159 -176973999 - AluSc SINE Alu 0 309 1 1982 112 0 33 chr3 41064551 41064881 -176972277 - AluSx SINE Alu 0 320 1 320 64 21 0 chr3 41065001 41065048 -176972110 + (TTTTA)n Simple_repeat Simple_repeat 2 49 0 1901 106 7 14 chr3 41065050 41065332 -176971826 - AluSg SINE Alu -30 280 1 1581 167 29 20 chr3 41065675 41065981 -176971177 - AluJb SINE Alu -3 309 1 528 194 29 19 chr3 41065984 41066087 -176971071 - MIR SINE MIR -48 214 111 352 254 82 25 chr3 41066156 41066278 -176970880 - L1ME4a LINE L1 -225 5896 5768 2156 112 3 3 chr3 41066605 41066917 -176970241 - AluSx SINE Alu 0 312 1 296 298 112 56 chr3 41066919 41067097 -176970061 - MIR SINE MIR -74 188 1 1479 214 117 93 chr3 41067172 41067760 -176969398 + MLT1E1 LTR MaLR 53 654 0 465 209 95 0 chr3 41067957 41068062 -176969096 - MIR SINE MIR -54 208 94 913 168 0 17 chr3 41068064 41068237 -176968921 + FRAM SINE Alu 1 169 -7 701 285 39 25 chr3 41068549 41068830 -176968328 - L1MC4a LINE L1 -1895 5913 5629 901 206 70 75 chr3 41069125 41069535 -176967623 - LTR16A1 LTR ERVL -4 453 15 827 218 81 21 chr3 41070349 41070760 -176966398 + MLT1D LTR MaLR 1 505 0 2031 103 3 3 chr3 41071342 41071632 -176965526 - AluSc SINE Alu -17 292 3 1959 212 61 15 chr3 41071640 41072116 -176965042 - L1MC4 LINE L1 0 8042 7545 393 284 9 0 chr3 41072393 41072502 -176964656 - MIR SINE MIR -37 225 116 349 347 41 48 chr3 41072561 41072829 -176964329 + L2 LINE L2 3043 3308 -5 349 252 10 29 chr3 41073499 41073602 -176963556 - L2 LINE L2 -1 3271 3171 1843 224 130 20 chr3 41073650 41074189 -176962969 - HsTC2 DNA Tc2 -40 1858 1261 635 86 0 0 chr3 41074252 41074333 -176962825 + AluS SINE Alu 2 82 -231 249 267 40 10 chr3 41074345 41074446 -176962712 - L2 LINE L2 -253 3019 2916 2047 94 0 7 chr3 41074659 41074934 -176962224 + AluSx SINE Alu 3 275 -37 270 0 0 0 chr3 41074935 41074965 -176962193 + (CA)n Simple_repeat Simple_repeat 2 31 0 277 254 40 75 chr3 41075357 41075441 -176961717 - L1ME LINE L1 -344 5777 5701 1192 207 14 5 chr3 41075441 41075663 -176961495 + MER58A DNA MER1_type 1 224 0 277 254 40 75 chr3 41075663 41075751 -176961407 - L1ME LINE L1 -420 5701 5611 369 249 85 79 chr3 41076024 41076189 -176960969 - MLT1J2 LTR MaLR -2 448 283 982 282 78 34 chr3 41076233 41076651 -176960507 + LTR16A LTR ERVL 1 443 -7 542 276 128 10 chr3 41077207 41077410 -176959748 - MIR SINE MIR -20 242 16 341 233 9 95 chr3 41077443 41077559 -176959599 + MER5A DNA MER1_type 5 110 -79 442 74 0 0 chr3 41077569 41077646 -176959512 + Alu SINE Alu 230 306 0 430 253 30 0 chr3 41077974 41078073 -176959085 + MIR SINE MIR 83 184 -78 336 252 65 65 chr3 41078425 41078564 -176958594 + MIR3 SINE MIR 10 148 -60 1088 135 22 0 chr3 41078619 41078797 -176958361 - AluSp SINE Alu -1 312 131 2724 31 0 0 chr3 41078797 41079115 -176958043 - AluYb8 SINE Alu 0 318 1 646 164 15 8 chr3 41079409 41079543 -176957615 - L1MB7 LINE L1 0 6184 6050 5270 206 53 43 chr3 41079546 41080240 -176956918 - L1ME1 LINE L1 -54 6112 5426 1731 175 3 0 chr3 41080240 41080548 -176956610 - AluJb SINE Alu -3 309 1 5270 206 53 43 chr3 41080548 41081985 -176955173 - L1ME1 LINE L1 -740 5426 3947 216 0 0 0 chr3 41081985 41082009 -176955149 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 5270 206 53 43 chr3 41082009 41082232 -176954926 - L1ME1 LINE L1 -2219 3947 3728 587 231 12 75 chr3 41084244 41084417 -176952741 - MIR SINE MIR -2 260 99 233 333 0 0 chr3 41084944 41085013 -176952145 + L2 LINE L2 3202 3270 -2 1365 167 12 8 chr3 41085115 41085360 -176951798 - Tigger5 DNA MER2_type 0 2323 2078 453 171 0 0 chr3 41085347 41085417 -176951741 - Tigger5 DNA MER2_type -2241 82 13 * 1312 257 158 39 chr3 41086418 41086936 -176950222 - MLT1G1 LTR MaLR -15 580 1 1656 138 3 44 chr3 41087068 41087366 -176949792 - AluJb SINE Alu -17 295 10 527 254 254 0 chr3 41087459 41087656 -176949502 + MIR SINE MIR 13 259 -3 2361 87 3 0 chr3 41088292 41088601 -176948557 + AluSp SINE Alu 1 310 -3 310 288 182 33 chr3 41088816 41089299 -176947859 - L1ME4a LINE L1 -3 6118 5564 478 279 162 0 chr3 41089371 41089525 -176947633 - MIR SINE MIR -16 246 68 1003 189 31 5 chr3 41089929 41090120 -176947038 - MER3 DNA MER1_type -5 204 9 26 50 0 0 chr3 41091563 41091603 -176945555 + AT_rich Low_complexity Low_complexity 1 40 0 1923 146 3 0 chr3 41091725 41092020 -176945138 - AluSg SINE Alu -14 296 1 2301 74 3 0 chr3 41092031 41092328 -176944830 - AluY SINE Alu -13 298 1 473 236 0 71 chr3 41092336 41092476 -176944682 - L1MC5 LINE L1 -34 7927 7798 627 223 12 42 chr3 41092491 41092657 -176944501 - L1MB7 LINE L1 -9 6175 6015 202 203 203 16 chr3 41092900 41092964 -176944194 - L2 LINE L2 -4 3309 3234 486 0 0 0 chr3 41093112 41093166 -176943992 + (TG)n Simple_repeat Simple_repeat 1 54 0 479 282 111 6 chr3 41093408 41093589 -176943569 - L2 LINE L2 0 3313 3114 450 233 117 63 chr3 41093629 41093852 -176943306 + L1ME4a LINE L1 5880 6114 -7 770 161 109 23 chr3 41094118 41094292 -176942866 + MIR SINE MIR 8 196 -66 691 143 0 9 chr3 41094301 41094406 -176942752 + AluSq/x SINE Alu 2 105 -208 420 266 148 49 chr3 41094517 41094720 -176942438 + MIR SINE MIR 28 250 -12 696 292 56 5 chr3 41095007 41095223 -176941935 + MIR SINE MIR 36 262 0 2033 137 0 3 chr3 41096356 41096669 -176940489 + AluSq SINE Alu 1 312 -1 1503 161 0 45 chr3 41096751 41097037 -176940121 - AluJo SINE Alu -16 296 24 486 275 196 25 chr3 41097094 41097569 -176939589 + L1MC/D LINE L1 5100 5682 -828 2141 96 0 3 chr3 41097569 41097870 -176939288 + AluY SINE Alu 1 300 -11 486 275 196 25 chr3 41097870 41097968 -176939190 + L1MC/D LINE L1 5682 5762 -748 1100 155 53 24 chr3 41097978 41098185 -176938973 + MER20 DNA MER1_type 7 219 0 2222 99 0 0 chr3 41099762 41100056 -176937102 + AluSx SINE Alu 1 294 -18 2027 132 0 0 chr3 41100058 41100362 -176936796 + AluSc SINE Alu 1 304 -5 686 101 8 25 chr3 41100726 41100845 -176936313 - L1PA13 LINE L1 -1 6162 6046 1813 142 3 0 chr3 41101905 41102187 -176934971 - AluJo SINE Alu -16 296 14 844 184 6 50 chr3 41102294 41102473 -176934685 - MER20 DNA MER1_type -27 192 22 257 118 20 0 chr3 41102489 41102540 -176934618 + (CA)n Simple_repeat Simple_repeat 2 53 0 1981 139 3 0 chr3 41102558 41102852 -176934306 + AluSx SINE Alu 1 295 -17 1652 197 0 0 chr3 41102929 41103224 -176933934 + AluSx SINE Alu 1 295 -17 431 294 62 7 chr3 41103597 41103743 -176933415 + MIR SINE MIR 20 173 -89 315 227 15 0 chr3 41103822 41103888 -176933270 - MER116 DNA Mariner -13 67 1 2279 37 44 7 chr3 41104662 41104960 -176932198 + AluY SINE Alu 1 309 -2 7711 219 35 66 chr3 41105177 41105529 -176931629 - L1MB8 LINE L1 0 6414 6053 1906 145 0 17 chr3 41105529 41105825 -176931333 - AluJb SINE Alu -16 296 6 7711 219 35 66 chr3 41105825 41107173 -176929985 - L1MB8 LINE L1 -361 6053 4666 990 167 0 0 chr3 41107173 41107341 -176929817 - FRAM SINE Alu -8 168 1 7711 219 35 66 chr3 41107341 41107927 -176929231 - L1MB8 LINE L1 -1748 4666 4064 1746 181 0 9 chr3 41107927 41108242 -176928916 - AluJb SINE Alu 0 312 1 7711 219 35 66 chr3 41108242 41109003 -176928155 - L1MB8 LINE L1 -2350 4064 3281 2462 157 33 19 chr3 41109003 41109424 -176927734 + MSTB1 LTR MaLR 4 430 -2 7711 219 35 66 chr3 41109424 41110354 -176926804 - L1MB8 LINE L1 -3133 3281 2373 449 278 15 8 chr3 41112255 41112388 -176924770 + MER117 DNA MER1_type 16 149 -48 219 167 0 0 chr3 41112527 41112569 -176924589 + (TA)n Simple_repeat Simple_repeat 2 43 0 471 172 115 33 chr3 41112719 41112841 -176924317 + FLAM_A SINE Alu 1 132 -1 687 275 17 50 chr3 41113807 41114047 -176923111 + MIR SINE MIR 21 252 -10 232 309 47 27 chr3 41114570 41114719 -176922439 + MIR3 SINE MIR 31 182 -26 1684 160 6 49 chr3 41115172 41115497 -176921661 - AluJb SINE Alu -1 311 1 421 278 136 55 chr3 41115511 41115587 -176921571 - L1ME4a LINE L1 -4 6117 6049 758 204 0 0 chr3 41115587 41115719 -176921439 + FLAM_A SINE Alu 2 133 0 421 278 136 55 chr3 41115719 41115988 -176921170 - L1ME4a LINE L1 -72 6049 5744 1152 189 87 23 chr3 41116008 41116273 -176920885 + L1MB8 LINE L1 5897 6178 0 292 283 46 13 chr3 41116316 41116468 -176920690 + HAL1 LINE L1 2272 2428 -79 243 235 24 35 chr3 41117761 41117846 -176919312 - MIR3 SINE MIR -112 96 13 277 296 104 30 chr3 41118499 41118634 -176918524 + MIR SINE MIR 8 148 -60 229 245 26 19 chr3 41119449 41119551 -176917607 + MER5A DNA MER1_type 1 112 -77 2200 93 6 13 chr3 41119772 41120084 -176917074 + AluSq SINE Alu 1 310 -3 901 88 59 15 chr3 41120093 41120229 -176916929 + L1PA11 LINE L1 6029 6170 -4 1870 141 41 28 chr3 41120759 41121122 -176916036 + L1MB3 LINE L1 5807 6174 -9 2346 64 0 7 chr3 41121122 41121419 -176915739 - AluY SINE Alu -16 295 1 1996 152 0 0 chr3 41121446 41121756 -176915402 + AluSx SINE Alu 1 310 -2 2915 77 58 16 chr3 41123369 41123799 -176913359 - LTR7 LTR ERV1 -2 448 1 2179 104 91 14 chr3 41123799 41124163 -176912995 - HERVH LTR ERV1 0 7713 7322 1460 120 19 0 chr3 41124161 41124377 -176912781 - HERVH LTR ERV1 -1894 5819 5600 * 9195 138 30 35 chr3 41124378 41126036 -176911122 - HERVH LTR ERV1 -2564 5149 3500 928 122 20 0 chr3 41126035 41126183 -176910975 - HERVH LTR ERV1 -4423 3290 3140 * 16076 90 14 19 chr3 41126177 41128938 -176908220 - HERVH LTR ERV1 -4726 2987 1 2939 62 103 0 chr3 41128940 41129346 -176907812 - LTR7 LTR ERV1 -2 448 1 2243 81 3 31 chr3 41129490 41129812 -176907346 + AluSp SINE Alu 1 313 0 370 254 16 57 chr3 41129822 41129944 -176907214 + HAL1 LINE L1 2064 2180 -327 386 273 76 17 chr3 41129983 41130155 -176907003 - Charlie8 DNA MER1_type -2231 186 5 2216 74 3 10 chr3 41130579 41130876 -176906282 - AluSg SINE Alu -15 295 1 438 314 47 50 chr3 41131333 41131632 -176905526 + LTR16C LTR ERVL 89 386 -105 345 263 0 0 chr3 41131701 41131777 -176905381 + MERVL LTR ERVL 3712 3787 -1698 278 26 26 0 chr3 41132323 41132362 -176904796 + (TG)n Simple_repeat Simple_repeat 2 41 0 1868 101 69 7 chr3 41132588 41132865 -176904293 - AluSp SINE Alu -19 294 1 532 174 14 21 chr3 41133411 41133555 -176903603 + GA-rich Low_complexity Low_complexity 2 144 0 2051 97 7 32 chr3 41134662 41134972 -176902186 - AluY SINE Alu -9 302 1 1401 151 0 9 chr3 41135825 41136050 -176901108 - AluJb SINE Alu -4 308 86 944 122 0 0 chr3 41136431 41136562 -176900596 - AluSq/x SINE Alu -179 133 3 436 313 117 18 chr3 41137177 41137621 -176899537 + HAL1 LINE L1 1145 1632 -875 906 68 0 0 chr3 41137833 41137951 -176899207 - AluY SINE Alu -7 304 187 284 300 58 0 chr3 41138082 41138202 -176898956 + L1MC4 LINE L1 7130 7256 -786 299 298 76 0 chr3 41138306 41138437 -176898721 + L1MC5 LINE L1 7299 7439 -522 267 235 25 12 chr3 41138467 41138548 -176898610 - L1M4 LINE L1 -1805 4341 4260 439 230 95 6 chr3 41138612 41138821 -176898337 + L1ME3A LINE L1 4378 4603 -1543 839 165 6 57 chr3 41138843 41139019 -176898139 + AluJo SINE Alu 113 279 -33 473 165 0 10 chr3 41139022 41139125 -176898033 + GA-rich Low_complexity Low_complexity 3 104 0 5591 132 47 52 chr3 41139142 41139848 -176897310 + L1MA6 LINE L1 4793 5501 -799 2225 92 0 7 chr3 41139848 41140152 -176897006 + AluSc SINE Alu 1 302 -7 5591 132 47 52 chr3 41140152 41140793 -176896365 + L1MA6 LINE L1 5501 6130 -170 976 145 295 13 chr3 41140793 41141020 -176896138 + AluJb SINE Alu 4 294 -8 5591 132 47 52 chr3 41141020 41141191 -176895967 + L1MA6 LINE L1 6130 6300 0 815 173 0 103 chr3 41141493 41141678 -176895480 - FRAM SINE Alu -16 160 1 513 183 0 19 chr3 41141678 41141782 -176895376 - L1 LINE L1 -1435 4711 4610 * 604 298 48 56 chr3 41141774 41142331 -176894827 + L1ME3A LINE L1 5367 5919 -245 2068 107 3 7 chr3 41142348 41142648 -176894510 + AluSx SINE Alu 1 299 -13 1912 128 0 0 chr3 41142718 41143031 -176894127 - AluSq SINE Alu 0 313 1 337 205 232 0 chr3 41143089 41143201 -176893957 + MLT1L LTR MaLR 478 615 0 31 58 0 0 chr3 41143965 41144017 -176893141 + AT_rich Low_complexity Low_complexity 1 52 0 180 0 0 0 chr3 41145139 41145159 -176891999 + (T)n Simple_repeat Simple_repeat 1 20 0 30 0 0 0 chr3 41146172 41146202 -176890956 + AT_rich Low_complexity Low_complexity 1 30 0 221 320 13 13 chr3 41147203 41147278 -176889880 + MIR3 SINE MIR 133 207 -1 438 245 133 0 chr3 41147612 41147800 -176889358 - Charlie2 DNA MER1_type -1 2861 2649 28 0 0 0 chr3 41147810 41147838 -176889320 + AT_rich Low_complexity Low_complexity 1 28 0 251 115 64 115 chr3 41147846 41147924 -176889234 - Charlie2 DNA MER1_type -300 2562 2489 318 105 35 0 chr3 41147976 41148033 -176889125 - Charlie2 DNA MER1_type -383 2479 2421 1162 168 165 48 chr3 41148062 41148301 -176888857 - Charlie2 DNA MER1_type -634 2228 1938 1991 115 0 26 chr3 41148301 41148606 -176888552 - AluSg SINE Alu -13 297 1 1162 168 165 48 chr3 41148606 41148699 -176888459 - Charlie2 DNA MER1_type -924 1938 1857 895 242 57 41 chr3 41148714 41149032 -176888126 + MER46C DNA MER2_type 1 323 -15 933 242 43 80 chr3 41149044 41149117 -176888041 - Charlie2 DNA MER1_type -2547 315 241 2143 144 128 8 chr3 41149117 41149499 -176887659 + MSTA LTR MaLR 1 428 0 933 242 43 80 chr3 41149499 41149752 -176887406 - Charlie2 DNA MER1_type -2621 241 1 901 146 0 29 chr3 41149780 41149917 -176887241 - FLAM_C SINE Alu 0 133 1 186 43 0 0 chr3 41150781 41150804 -176886354 + (A)n Simple_repeat Simple_repeat 1 23 0 2435 79 0 10 chr3 41151409 41151712 -176885446 + AluSg SINE Alu 1 300 -10 2336 106 0 3 chr3 41151792 41152095 -176885063 + AluSq SINE Alu 2 303 -10 23 78 0 0 chr3 41152155 41152206 -176884952 + AT_rich Low_complexity Low_complexity 1 51 0 304 279 15 0 chr3 41152251 41152319 -176884839 + MIR SINE MIR 6 74 -188 1994 97 12 0 chr3 41152422 41152680 -176884478 + AluSx SINE Alu 37 297 -15 23 0 0 0 chr3 41153236 41153259 -176883899 + AT_rich Low_complexity Low_complexity 1 23 0 331 236 0 56 chr3 41153735 41153824 -176883334 + L2 LINE L2 3230 3313 0 425 283 73 114 chr3 41154409 41154724 -176882434 - L2 LINE L2 -62 3210 2909 254 328 76 29 chr3 41154911 41155082 -176882076 - L2 LINE L2 -572 2742 2564 561 321 158 23 chr3 41155866 41156513 -176880645 - L2 LINE L2 -942 2372 1639 2487 199 102 31 chr3 41156872 41157489 -176879669 + L1MD2 LINE L1 5574 6234 -8 2091 110 7 32 chr3 41158331 41158640 -176878518 + AluSx SINE Alu 1 301 -11 967 141 0 15 chr3 41158722 41158857 -176878301 + FLAM_C SINE Alu 1 133 0 2606 42 7 7 chr3 41159526 41159834 -176877324 + AluY SINE Alu 3 310 -1 23 54 0 0 chr3 41159916 41159953 -176877205 + AT_rich Low_complexity Low_complexity 1 37 0 2464 81 0 0 chr3 41160000 41160297 -176876861 + AluSg SINE Alu 1 297 -13 277 215 221 27 chr3 41160610 41160759 -176876399 - MIR3 SINE MIR -17 191 14 2206 81 67 0 chr3 41161017 41161300 -176875858 - AluSc SINE Alu -7 302 1 230 324 0 54 chr3 41162334 41162408 -176874750 - L3 LINE CR1 -11 1566 1497 1864 108 41 20 chr3 41163335 41163630 -176873528 + AluSx SINE Alu 1 301 -11 251 257 121 36 chr3 41163754 41163894 -176873264 - L2 LINE L2 -290 2982 2831 208 163 0 41 chr3 41165283 41165332 -176871826 + (CCCCG)n Simple_repeat Simple_repeat 3 49 0 313 289 139 40 chr3 41165449 41165622 -176871536 - L2 LINE L2 -3 3310 3121 22 0 0 0 chr3 41165663 41165685 -176871473 + AT_rich Low_complexity Low_complexity 1 22 0 343 315 99 67 chr3 41165700 41166050 -176871108 - L2 LINE L2 -188 3125 2754 425 219 89 65 chr3 41166239 41166408 -176870750 - MIR SINE MIR -78 184 12 2403 81 0 0 chr3 41166860 41167156 -176870002 + AluSx SINE Alu 1 296 -16 2515 51 0 0 chr3 41167159 41167451 -176869707 + AluY SINE Alu 1 292 -19 357 207 72 18 chr3 41167485 41167596 -176869562 + L1MC4 LINE L1 7924 8040 -2 319 312 65 22 chr3 41167756 41167894 -176869264 - MER5A DNA MER1_type -2 187 44 25 31 0 0 chr3 41168326 41168358 -176868800 + AT_rich Low_complexity Low_complexity 1 32 0 1567 142 25 22 chr3 41168442 41168716 -176868442 - LTR43 LTR ERV1 0 602 328 576 77 13 0 chr3 41168718 41168796 -176868362 + MADE1 DNA Mariner 1 79 -1 * 2152 146 3 3 chr3 41168796 41169124 -176868034 - LTR43 LTR ERV1 -274 328 1 298 352 130 24 chr3 41169447 41169953 -176867205 - L2 LINE L2 -370 2944 2385 393 211 11 0 chr3 41169969 41170059 -176867099 - LTR37B LTR ERV1 0 468 378 1260 140 117 87 chr3 41170065 41170350 -176866808 + AluJb SINE Alu 14 306 0 378 234 89 44 chr3 41170800 41170861 -176866297 - LTR37B LTR ERV1 -79 389 332 360 0 0 0 chr3 41170861 41170901 -176866257 + (TG)n Simple_repeat Simple_repeat 2 41 0 378 234 89 44 chr3 41170901 41170997 -176866161 - LTR37B LTR ERV1 -136 332 225 284 302 32 8 chr3 41171067 41171193 -176865965 - LTR37B LTR ERV1 -270 198 70 1022 173 17 17 chr3 41171195 41171374 -176865784 - MER58A DNA MER1_type -1 223 45 1940 112 61 0 chr3 41171378 41171656 -176865502 + AluSq SINE Alu 1 295 -18 28 0 0 0 chr3 41171656 41171684 -176865474 + AT_rich Low_complexity Low_complexity 1 28 0 311 268 0 0 chr3 41171684 41171740 -176865418 - MER58A DNA MER1_type -168 56 1 1257 153 0 36 chr3 41171748 41171944 -176865214 - MER5A DNA MER1_type 0 189 1 247 211 123 0 chr3 41171946 41172003 -176865155 - LTR37B LTR ERV1 -394 74 11 195 340 30 0 chr3 41172011 41172111 -176865047 - L2 LINE L2 -940 2374 2272 1382 122 0 0 chr3 41172111 41172300 -176864858 + AluSx SINE Alu 1 189 -123 613 199 153 42 chr3 41173055 41173271 -176863887 - L1MC4a LINE L1 -1614 6194 5955 1509 235 84 59 chr3 41173289 41173749 -176863409 - L1MC4a LINE L1 -1903 5905 5427 2121 137 0 0 chr3 41173749 41174048 -176863110 - AluSx SINE Alu -13 299 1 1509 235 84 59 chr3 41174048 41174148 -176863010 - L1MC4a LINE L1 -2381 5427 5331 2431 77 3 3 chr3 41174148 41174448 -176862710 - AluSc SINE Alu -9 300 1 953 137 37 31 chr3 41174449 41174610 -176862548 - AluJb SINE Alu -31 281 120 5277 176 82 53 chr3 41174628 41175283 -176861875 + Charlie1a DNA MER1_type 49 683 -2078 963 143 0 0 chr3 41175283 41175416 -176861742 - FLAM_A SINE Alu 0 133 1 5277 176 82 53 chr3 41175416 41175599 -176861559 + Charlie1a DNA MER1_type 683 859 -1902 1828 119 23 39 chr3 41175599 41175909 -176861249 + AluJb SINE Alu 1 305 -7 5277 176 82 53 chr3 41175909 41176436 -176860722 + Charlie1a DNA MER1_type 859 1455 0 216 67 0 0 chr3 41176554 41176584 -176860574 + (TC)n Simple_repeat Simple_repeat 1 30 0 398 297 98 17 chr3 41177641 41177877 -176859281 + L1M4 LINE L1 3574 3828 -2318 2052 148 0 3 chr3 41177882 41178185 -176858973 - AluSx SINE Alu -10 302 1 784 180 58 6 chr3 41178338 41178510 -176858648 + AluSg/x SINE Alu 105 285 -24 1747 197 0 0 chr3 41178594 41178889 -176858269 + AluSx SINE Alu 1 295 -17 417 288 62 7 chr3 41179262 41179408 -176857750 + MIR SINE MIR 20 173 -89 299 207 17 0 chr3 41179487 41179545 -176857613 - MER116 DNA Mariner -13 67 9 2157 89 43 0 chr3 41180328 41180610 -176856548 + AluSg SINE Alu 1 294 -16 2515 51 0 0 chr3 41180613 41180905 -176856253 + AluY SINE Alu 1 292 -19 357 207 72 18 chr3 41180939 41181050 -176856108 + L1MC4 LINE L1 7924 8040 -2 319 312 65 22 chr3 41181210 41181348 -176855810 - MER5A DNA MER1_type -2 187 44 25 31 0 0 chr3 41181780 41181812 -176855346 + AT_rich Low_complexity Low_complexity 1 32 0 1492 139 33 26 chr3 41181896 41182169 -176854989 - LTR43 LTR ERV1 0 602 328 576 77 13 0 chr3 41182171 41182249 -176854909 + MADE1 DNA Mariner 1 79 -1 * 2152 146 3 3 chr3 41182249 41182577 -176854581 - LTR43 LTR ERV1 -274 328 1 247 241 35 23 chr3 41183441 41183528 -176853630 - L1ME LINE L1 -503 5618 5531 236 313 80 18 chr3 41183572 41183684 -176853474 + MIR3 SINE MIR 13 131 -77 2277 87 10 3 chr3 41183731 41184029 -176853129 - AluSx SINE Alu -12 300 1 380 189 54 0 chr3 41184084 41184158 -176853000 - MER116 DNA Mariner -1 79 2 293 328 91 27 chr3 41184543 41184729 -176852429 - L2 LINE L2 -5 3267 3070 3164 191 95 9 chr3 41184763 41185478 -176851680 - L1ME1 LINE L1 -5 6161 5382 240 296 0 14 chr3 41186033 41186104 -176851054 - MLT1L LTR MaLR -114 501 432 1717 161 50 7 chr3 41186233 41186532 -176850626 + AluJb SINE Alu 1 312 0 305 85 0 0 chr3 41186544 41186591 -176850567 + L1MA7 LINE L1 6200 6246 -45 1464 183 29 42 chr3 41186591 41186903 -176850255 + AluJo SINE Alu 1 308 -4 202 162 0 27 chr3 41186988 41187025 -176850133 - L2 LINE L2 -15 3298 3263 192 259 93 0 chr3 41186992 41187046 -176850112 - MIR SINE MIR -12 250 192 * 733 187 30 74 chr3 41187065 41187268 -176849890 + MIR SINE MIR 64 257 -5 301 305 40 63 chr3 41187317 41187540 -176849618 - MLT1K LTR MaLR -358 230 13 1841 161 0 20 chr3 41189997 41190302 -176846856 - AluJb SINE Alu -13 299 1 2354 74 3 3 chr3 41190353 41190649 -176846509 - AluSg SINE Alu -14 296 1 21 36 0 0 chr3 41190695 41190723 -176846435 + AT_rich Low_complexity Low_complexity 1 28 0 317 302 0 28 chr3 41191917 41192023 -176845135 - Charlie8 DNA MER1_type -2172 245 143 2277 95 0 16 chr3 41192050 41192355 -176844803 - AluSq SINE Alu -13 300 1 1934 164 0 3 chr3 41192620 41192925 -176844233 + AluJo SINE Alu 1 304 -8 305 253 12 12 chr3 41194755 41194838 -176842320 - L1ME LINE L1 -349 5772 5690 2175 115 3 13 chr3 41195635 41195949 -176841209 + AluSx SINE Alu 2 312 0 401 281 154 15 chr3 41196181 41196448 -176840710 - MLT1J LTR MaLR -5 506 203 286 221 182 0 chr3 41196519 41196596 -176840562 - MLT1J LTR MaLR -417 94 4 2013 135 13 3 chr3 41196851 41197155 -176840003 - AluY SINE Alu -4 307 1 915 112 22 8 chr3 41197155 41197289 -176839869 - AluJo SINE Alu -176 136 1 420 230 86 3 chr3 41197508 41197616 -176839542 + MER5A DNA MER1_type 1 106 -72 1227 265 120 19 chr3 41197785 41198211 -176838947 + MLT1J LTR MaLR 1 469 -42 506 280 21 28 chr3 41198880 41199023 -176838135 + MIR SINE MIR 108 249 -13 2198 104 0 7 chr3 41199033 41199322 -176837836 + AluSq SINE Alu 1 287 -26 787 163 0 0 chr3 41199216 41199345 -176837813 + AluSp/q SINE Alu 182 310 -3 389 288 182 33 chr3 41199560 41200043 -176837115 - L1ME4a LINE L1 -3 6118 5564 478 279 162 0 chr3 41200115 41200269 -176836889 - MIR SINE MIR -16 246 68 1003 189 31 5 chr3 41200673 41200864 -176836294 - MER3 DNA MER1_type -5 204 9 26 50 0 0 chr3 41202307 41202347 -176834811 + AT_rich Low_complexity Low_complexity 1 40 0 1923 142 10 0 chr3 41202469 41202764 -176834394 - AluSx SINE Alu -14 298 1 2301 74 3 0 chr3 41202775 41203072 -176834086 - AluY SINE Alu -13 298 1 473 236 0 71 chr3 41203080 41203220 -176833938 - L1MC5 LINE L1 -34 7927 7798 627 223 12 42 chr3 41203235 41203401 -176833757 - L1MB7 LINE L1 -9 6175 6015 202 203 203 16 chr3 41203643 41203707 -176833451 - L2 LINE L2 -4 3309 3234 486 0 0 0 chr3 41203855 41203909 -176833249 + (TG)n Simple_repeat Simple_repeat 1 54 0 479 282 111 6 chr3 41204151 41204332 -176832826 - L2 LINE L2 0 3313 3114 450 233 117 63 chr3 41204372 41204595 -176832563 + L1ME4a LINE L1 5880 6114 -7 770 161 109 23 chr3 41204861 41205035 -176832123 + MIR SINE MIR 8 196 -66 691 143 0 9 chr3 41205044 41205149 -176832009 + AluSq/x SINE Alu 2 105 -208 420 266 148 49 chr3 41205260 41205463 -176831695 + MIR SINE MIR 28 250 -12 696 292 56 5 chr3 41205750 41205966 -176831192 + MIR SINE MIR 36 262 0 2033 137 0 3 chr3 41207099 41207412 -176829746 + AluSq SINE Alu 1 312 -1 1503 161 0 45 chr3 41207494 41207780 -176829378 - AluJo SINE Alu -16 296 24 486 275 196 25 chr3 41207837 41208312 -176828846 + L1MC/D LINE L1 5100 5682 -828 2141 96 0 3 chr3 41208312 41208613 -176828545 + AluY SINE Alu 1 300 -11 486 275 196 25 chr3 41208613 41208711 -176828447 + L1MC/D LINE L1 5682 5762 -748 1100 155 53 24 chr3 41208721 41208928 -176828230 + MER20 DNA MER1_type 7 219 0 2222 99 0 0 chr3 41210505 41210799 -176826359 + AluSx SINE Alu 1 294 -18 2027 132 0 0 chr3 41210801 41211105 -176826053 + AluSc SINE Alu 1 304 -5 686 101 8 25 chr3 41211469 41211588 -176825570 - L1PA13 LINE L1 -1 6162 6046 1813 142 3 0 chr3 41212647 41212929 -176824229 - AluJo SINE Alu -16 296 14 844 184 6 50 chr3 41213036 41213215 -176823943 - MER20 DNA MER1_type -27 192 22 257 118 20 0 chr3 41213231 41213282 -176823876 + (CA)n Simple_repeat Simple_repeat 2 53 0 1981 139 3 0 chr3 41213300 41213594 -176823564 + AluSx SINE Alu 1 295 -17 1652 197 0 0 chr3 41213671 41213966 -176823192 + AluSx SINE Alu 1 295 -17 431 294 62 7 chr3 41214339 41214485 -176822673 + MIR SINE MIR 20 173 -89 315 227 15 0 chr3 41214564 41214630 -176822528 - MER116 DNA Mariner -13 67 1 2279 37 44 7 chr3 41215404 41215702 -176821456 + AluY SINE Alu 1 309 -2 4986 163 30 12 chr3 41215919 41216271 -176820887 - L1MB8 LINE L1 0 6178 5834 1906 145 0 17 chr3 41216271 41216567 -176820591 - AluJb SINE Alu -16 296 6 4986 163 30 12 chr3 41216567 41217914 -176819244 - L1MB8 LINE L1 -344 5834 4445 990 167 0 0 chr3 41217915 41218083 -176819075 - FRAM SINE Alu -8 168 1 1524 191 41 52 chr3 41218097 41218537 -176818621 - L1MB8 LINE L1 -1717 4429 3995 379 130 139 61 chr3 41218953 41219068 -176818090 - MLT1B LTR MaLR -266 124 1 704 283 40 31 chr3 41219076 41219299 -176817859 - MLT1K LTR MaLR -341 247 23 1611 217 6 22 chr3 41219299 41219654 -176817504 + MLT1A2 LTR MaLR 1 349 -25 262 246 84 69 chr3 41220539 41220742 -176816416 + L1MC4a LINE L1 5711 5916 -1892 549 200 158 42 chr3 41220746 41220961 -176816197 + L1MC4a LINE L1 5955 6194 -1614 4685 94 1 12 chr3 41221745 41222428 -176814730 + HERVH LTR ERV1 2226 2901 -4812 22 0 0 0 chr3 41222851 41222873 -176814285 + GC_rich Low_complexity Low_complexity 1 22 0 2318 156 31 11 chr3 41323022 41323495 -176713663 - L1M3 LINE L1 -504 5679 5200 2171 108 13 0 chr3 41323536 41323843 -176713315 - AluSx SINE Alu -1 311 1 302 293 93 47 chr3 41324520 41324670 -176712488 + L1ME4a LINE L1 5386 5542 -579 237 269 76 8 chr3 41324818 41324937 -176712221 + L1ME4a LINE L1 5817 5943 -178 242 338 0 0 chr3 41325134 41325175 -176711983 + GA-rich Low_complexity Low_complexity 1 44 -36 2100 124 0 9 chr3 41325175 41325490 -176711668 + AluSx SINE Alu 1 312 0 242 338 0 0 chr3 41325490 41325528 -176711630 + GA-rich Low_complexity Low_complexity 43 80 0 227 204 20 0 chr3 41325616 41325665 -176711493 + CT-rich Low_complexity Low_complexity 2 51 0 204 125 0 0 chr3 41325665 41325697 -176711461 + (CA)n Simple_repeat Simple_repeat 2 33 0 361 305 39 26 chr3 41327636 41327790 -176709368 + MER5B DNA MER1_type 17 172 -6 312 193 125 11 chr3 41327859 41327947 -176709211 - MER5A DNA MER1_type -77 112 15 1934 143 117 8 chr3 41328201 41328586 -176708572 + L1MB8 LINE L1 5752 6178 0 25 83 0 0 chr3 41328673 41328733 -176708425 + AT_rich Low_complexity Low_complexity 1 60 0 961 270 44 49 chr3 41328765 41329313 -176707845 + L1ME3 LINE L1 5284 5828 -334 560 231 56 7 chr3 41329437 41329580 -176707578 - MLT1H LTR MaLR -365 184 35 215 227 0 0 chr3 41329968 41330012 -176707146 + MIR SINE MIR 212 255 -7 323 294 103 19 chr3 41330029 41330243 -176706915 + L2 LINE L2 2830 3061 -211 221 283 0 0 chr3 41330252 41330298 -176706860 + L2 LINE L2 3265 3310 -3 255 272 217 0 chr3 41330833 41330925 -176706233 - MIR SINE MIR -123 139 28 515 225 33 17 chr3 41330946 41331066 -176706092 - MER69A DNA AcHobo -42 135 14 733 168 99 0 chr3 41331440 41331571 -176705587 + MER21B LTR ERV1 321 464 -399 344 217 101 0 chr3 41331683 41331752 -176705406 + MER58A DNA MER1_type 2 77 -30 2161 107 10 3 chr3 41332150 41332449 -176704709 + AluSx SINE Alu 1 301 -11 238 228 51 0 chr3 41332876 41332955 -176704203 - L1MDa LINE L1 -4940 1189 1107 370 234 36 36 chr3 41333013 41333150 -176704008 - L1MDa LINE L1 -5088 1031 895 1396 171 23 0 chr3 41333258 41333515 -176703643 + AluJo SINE Alu 14 276 -36 849 140 13 25 chr3 41333650 41333807 -176703351 - AluJb SINE Alu -14 298 144 7181 60 0 12 chr3 41334031 41335586 -176701572 - SVA Other Other -799 1381 1 316 170 141 126 chr3 41337568 41337703 -176699455 - MER5A DNA MER1_type -51 138 2 521 256 0 16 chr3 41338882 41339003 -176698155 + L2 LINE L2 3150 3268 -4 338 259 119 70 chr3 41339183 41339384 -176697774 + MLT1L LTR MaLR 170 380 -235 388 213 38 0 chr3 41339612 41339692 -176697466 - MIR SINE MIR -67 195 113 2420 72 0 3 chr3 41339868 41340175 -176696983 + AluY SINE Alu 1 306 -5 1742 144 11 0 chr3 41340279 41340550 -176696608 + AluSx SINE Alu 1 274 -38 551 171 26 26 chr3 41340589 41340685 -176696473 + MLT1B LTR MaLR 4 102 -288 2385 15 0 0 chr3 41340685 41340956 -176696202 + AluYb8 SINE Alu 34 304 -14 551 171 26 26 chr3 41340956 41340976 -176696182 + MLT1B LTR MaLR 101 120 -270 443 305 13 26 chr3 41341127 41341281 -176695877 - MIR3 SINE MIR -16 192 41 769 133 17 31 chr3 41342673 41343089 -176694069 + (TCCA)n Simple_repeat Simple_repeat 1 410 0 249 33 0 0 chr3 41343140 41343170 -176693988 + (CATCC)n Simple_repeat Simple_repeat 1 30 0 250 204 20 0 chr3 41343790 41343839 -176693319 - MER91A DNA MER1_type 0 190 141 817 216 35 30 chr3 41343847 41344046 -176693112 - MER3 DNA MER1_type -8 201 2 214 391 38 0 chr3 41344046 41344179 -176692979 - MER91A DNA MER1_type -58 138 1 288 268 120 42 chr3 41344983 41345125 -176692033 - L3 LINE CR1 -104 1473 1321 488 193 67 44 chr3 41345139 41345274 -176691884 + MIR SINE MIR 83 220 -42 1739 134 8 4 chr3 41345327 41345595 -176691563 - AluJb SINE Alu -18 294 26 268 323 77 19 chr3 41345735 41345890 -176691268 + MIR SINE MIR 2 165 -97 374 229 57 9 chr3 41346336 41346441 -176690717 - MIR3 SINE MIR -15 193 84 2124 105 24 0 chr3 41347813 41348107 -176689051 - AluSg SINE Alu -9 301 1 2312 153 23 0 chr3 41348107 41348493 -176688665 + L1MB3 LINE L1 5788 6182 -1 356 171 37 0 chr3 41348737 41348819 -176688339 - MLT1J LTR MaLR 0 555 471 876 203 76 10 chr3 41348829 41349026 -176688132 - MLT1G1 LTR MaLR -379 216 7 376 256 29 58 chr3 41349395 41349532 -176687626 + MER5B DNA MER1_type 1 133 -45 281 239 14 0 chr3 41349711 41349782 -176687376 - MIR3 SINE MIR -11 197 126 486 216 17 35 chr3 41349782 41349898 -176687260 - MER81 DNA DNA 0 114 1 4420 171 22 6 chr3 41349901 41351259 -176685899 - L1MB7 LINE L1 -149 6035 4658 1972 154 58 3 chr3 41351375 41351718 -176685440 - MER57A LTR ERV1 -41 362 1 729 275 81 14 chr3 41351789 41352178 -176684980 - MLT1J LTR MaLR -52 459 1 374 300 121 9 chr3 41352181 41352525 -176684633 + HAL1 LINE L1 1483 1946 -561 2263 120 0 13 chr3 41352739 41353055 -176684103 - AluSx SINE Alu 0 312 1 957 142 8 0 chr3 41353055 41353189 -176683969 - AluJo SINE Alu -177 135 1 704 191 0 60 chr3 41353191 41353359 -176683799 - L1MC4 LINE L1 -407 7635 7478 421 210 0 0 chr3 41353361 41353442 -176683716 + AluJ/FLAM SINE Alu 2 82 -230 901 173 33 107 chr3 41353541 41353813 -176683345 - AluJo SINE Alu -18 294 43 2371 89 25 30 chr3 41354311 41354334 -176682824 + L1PA16 LINE L1 5808 5830 -336 2344 101 0 0 chr3 41354334 41354631 -176682527 + AluSc SINE Alu 1 297 -12 2371 89 25 30 chr3 41354631 41354968 -176682190 + L1PA16 LINE L1 5830 6166 0 355 172 31 0 chr3 41355329 41355405 -176681753 + AluSp SINE Alu 147 211 -92 792 222 59 37 chr3 41355528 41355798 -176681360 + L1ME1 LINE L1 5876 6151 -15 2179 117 0 3 chr3 41355798 41356096 -176681062 - AluSx SINE Alu -15 297 1 1786 182 3 3 chr3 41356401 41356697 -176680461 + AluJo SINE Alu 1 296 -16 271 264 55 36 chr3 41356778 41356888 -176680270 + HAL1b LINE L1 1203 1314 -34 264 349 75 7 chr3 41357063 41357209 -176679949 + MIR3 SINE MIR 21 176 -32 303 164 18 0 chr3 41358442 41358497 -176678661 + L1ME3A LINE L1 5879 5934 -236 878 136 0 0 chr3 41359282 41359414 -176677744 - FLAM_C SINE Alu -1 132 1 2251 254 22 7 chr3 41360224 41360780 -176676378 - L1ME3A LINE L1 -10 6160 5597 732 188 158 6 chr3 41360926 41361091 -176676067 + MER58A DNA MER1_type 32 221 -3 802 73 18 9 chr3 41361402 41361511 -176675647 + AluY SINE Alu 184 293 -18 2323 107 0 7 chr3 41362367 41362676 -176674482 + AluSc SINE Alu 1 307 -2 373 203 47 62 chr3 41362720 41362848 -176674310 + L1MC5 LINE L1 7770 7895 -66 1377 147 14 0 chr3 41363418 41363629 -176673529 - AluSx SINE Alu -13 297 84 1152 144 0 28 chr3 41363735 41363916 -176673242 + AluJo SINE Alu 1 176 -136 535 141 0 0 chr3 41363916 41363994 -176673164 - AluSx SINE Alu -234 79 2 892 229 77 72 chr3 41364532 41364907 -176672251 + MSTD LTR MaLR 17 393 -3 373 167 125 83 chr3 41364907 41365022 -176672136 + MLT1J LTR MaLR 338 461 -50 1384 137 40 0 chr3 41365022 41365249 -176671909 + MER46A DNA MER2_type 1 236 0 373 167 125 83 chr3 41365249 41365270 -176671888 + MLT1J LTR MaLR 461 480 -31 1855 157 4 0 chr3 41365471 41365778 -176671380 + AluJb SINE Alu 1 308 0 231 324 14 0 chr3 41366025 41366096 -176671062 + L2 LINE L2 3242 3313 0 328 307 66 6 chr3 41366294 41366460 -176670698 - L1MC4 LINE L1 -241 7801 7626 316 128 0 0 chr3 41366461 41366508 -176670650 - Alu SINE Alu -7 295 249 307 408 0 0 chr3 41366635 41366835 -176670323 + G-rich Low_complexity Low_complexity 1 200 0 385 246 41 35 chr3 41366904 41367075 -176670083 + L1MC4a LINE L1 5840 6011 -1797 2420 98 0 0 chr3 41367558 41367855 -176669303 + AluSg SINE Alu 1 297 -13 259 163 38 62 chr3 41368133 41368213 -176668945 - U13 snRNA snRNA -26 78 1 769 273 123 46 chr3 41368236 41368650 -176668508 - MLT1J1 LTR MaLR 0 446 1 229 224 15 45 chr3 41368714 41368781 -176668377 - MIR SINE MIR -78 184 120 21 0 0 0 chr3 41369093 41369114 -176668044 + AT_rich Low_complexity Low_complexity 1 21 0 215 325 79 24 chr3 41369479 41369605 -176667553 + MIR3 SINE MIR 15 147 -61 976 269 63 36 chr3 41371187 41371551 -176665607 + LTR33 LTR ERVL 23 396 -125 420 254 48 39 chr3 41371674 41371858 -176665300 + L1MC/D LINE L1 5553 5737 -532 528 237 164 0 chr3 41372139 41372316 -176664842 + MIR SINE MIR 17 222 -40 1702 182 0 3 chr3 41372324 41372621 -176664537 + AluJo SINE Alu 1 296 -16 181 221 265 0 chr3 41372842 41372910 -176664248 + MIR SINE MIR 176 261 -1 1331 272 116 15 chr3 41372995 41373454 -176663704 + MLT1J LTR MaLR 3 507 -4 438 276 79 47 chr3 41373588 41373842 -176663316 + MLT1J LTR MaLR 1 262 -249 323 320 49 16 chr3 41374155 41374277 -176662881 + MLT1K LTR MaLR 24 149 -439 370 264 41 102 chr3 41374392 41374653 -176662505 + MLT1K LTR MaLR 322 545 -43 2222 121 3 10 chr3 41374924 41375238 -176661920 + AluSx SINE Alu 1 312 0 373 233 40 0 chr3 41375600 41375710 -176661448 + MIR SINE MIR 43 160 -66 1767 174 3 7 chr3 41375891 41376189 -176660969 + AluJo SINE Alu 1 297 -15 245 157 20 39 chr3 41377117 41377168 -176659990 - L1ME4a LINE L1 -104 6017 5968 24 85 0 0 chr3 41377186 41377245 -176659913 + AT_rich Low_complexity Low_complexity 1 59 0 780 209 45 6 chr3 41377898 41378075 -176659083 + MER5A DNA MER1_type 4 187 -2 248 204 0 0 chr3 41378371 41378415 -176658743 - L2 LINE L2 -40 3273 3230 4196 163 101 16 chr3 41378452 41379434 -176657724 + L1MB7 LINE L1 5122 6184 0 2152 112 0 37 chr3 41379624 41379946 -176657212 - AluSx SINE Alu -2 310 1 326 71 0 0 chr3 41379946 41379988 -176657170 - Alu SINE Alu -261 42 1 493 182 91 0 chr3 41380309 41380408 -176656750 + L1MA8 LINE L1 5971 6078 -213 437 239 28 102 chr3 41381101 41381277 -176655881 + MIR SINE MIR 79 241 -21 298 282 105 16 chr3 41381310 41381434 -176655724 + L2 LINE L2 3134 3268 -4 1769 162 54 0 chr3 41381942 41382257 -176654901 + MLT1B LTR MaLR 57 388 -2 801 187 47 6 chr3 41383745 41383916 -176653242 + MER5B DNA MER1_type 1 178 0 982 169 0 0 chr3 41384441 41384630 -176652528 - AluJb SINE Alu 0 323 135 358 357 26 7 chr3 41384836 41384990 -176652168 - L2 LINE L2 0 3272 3116 282 264 55 27 chr3 41385300 41385410 -176651748 + MLT1H LTR MaLR 437 549 0 1755 141 28 17 chr3 41385743 41386033 -176651125 - AluJo SINE Alu -19 293 1 2228 86 0 7 chr3 41386312 41386592 -176650566 + AluSc SINE Alu 1 278 -31 213 39 0 0 chr3 41386595 41386621 -176650537 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 643 157 0 26 chr3 41386824 41386977 -176650181 + (TCTA)n Simple_repeat Simple_repeat 2 150 0 278 250 31 0 chr3 41387060 41387124 -176650034 + MIR3 SINE MIR 120 185 -23 830 242 171 10 chr3 41387135 41387428 -176649730 - MER113 DNA MER1_type? 0 521 182 1643 197 10 0 chr3 41387471 41387775 -176649383 + AluJo SINE Alu 1 307 -5 205 250 73 0 chr3 41388017 41388085 -176649073 - MIR SINE MIR -115 93 21 412 284 45 27 chr3 41388222 41388420 -176648738 - MIR SINE MIR -60 202 3 402 260 47 16 chr3 41388436 41388563 -176648595 - L2 LINE L2 -2 3311 3181 2104 119 0 0 chr3 41388605 41388891 -176648267 + AluSg SINE Alu 2 287 -23 304 275 0 22 chr3 41388891 41388982 -176648176 + L1MC4 LINE L1 6615 6703 -1339 * 318 264 23 0 chr3 41388970 41389057 -176648101 + L1MC4 LINE L1 6614 6702 -1340 459 196 0 0 chr3 41389060 41389233 -176647925 + (TA)n Simple_repeat Simple_repeat 2 174 0 303 288 29 35 chr3 41389397 41389567 -176647591 + GA-rich Low_complexity Low_complexity 5 173 0 220 338 0 0 chr3 41389570 41389647 -176647511 - MIR SINE MIR -6 256 180 2624 153 75 42 chr3 41389860 41390325 -176646833 + LTR24B LTR ERV1 3 491 -85 2140 98 18 0 chr3 41390325 41390630 -176646528 - AluSc SINE Alu 0 310 1 2624 153 75 42 chr3 41390630 41390712 -176646446 + LTR24B LTR ERV1 491 569 -7 366 176 15 0 chr3 41390954 41391022 -176646136 - L1ME4a LINE L1 -81 6040 5972 288 267 122 8 chr3 41391253 41391343 -176645815 + L1ME4a LINE L1 5849 5960 -161 4443 137 5 37 chr3 41391343 41392097 -176645061 + L1MB2 LINE L1 5442 6171 0 288 267 122 8 chr3 41392097 41392137 -176645021 + L1ME4a LINE L1 5960 5994 -127 452 206 178 20 chr3 41392173 41392319 -176644839 + MER5A DNA MER1_type 12 180 -9 201 195 0 0 chr3 41392318 41392359 -176644799 + L2 LINE L2 3273 3313 0 * 456 266 101 19 chr3 41393390 41393599 -176643559 + L1MC4a LINE L1 5683 5858 -305 376 248 95 7 chr3 41393710 41393847 -176643311 + MIR SINE MIR 65 213 -49 440 292 0 0 chr3 41394090 41394210 -176642948 - MER117 DNA MER1_type -73 124 5 235 284 165 0 chr3 41394276 41394385 -176642773 + MER94 DNA DNA 4 130 -4 2419 70 3 16 chr3 41394585 41394898 -176642260 + AluSc SINE Alu 1 309 0 5959 77 38 30 chr3 41395218 41396038 -176641120 + LTR12 LTR ERV1 1 826 0 4354 120 22 13 chr3 41396493 41397127 -176640031 + LTR12-int LTR ERV1 1 640 -5306 811 101 34 0 chr3 41397115 41397234 -176639924 + LTR12-int LTR ERV1 1705 1827 -5710 * 22059 100 27 22 chr3 41397240 41397839 -176639319 + MER41-int LTR ERV1 1354 1949 -3997 2368 91 7 0 chr3 41397839 41398137 -176639021 - AluSp SINE Alu -13 300 1 22059 100 27 22 chr3 41398137 41399143 -176638015 + MER41-int LTR ERV1 1949 2949 -2997 1837 171 7 3 chr3 41399143 41399447 -176637711 + AluJb SINE Alu 1 305 -7 22059 100 27 22 chr3 41399447 41399536 -176637622 + MER41-int LTR ERV1 2949 3036 -2910 4770 72 5 3 chr3 41399536 41400157 -176637001 + L1PA8 LINE L1 5548 6169 -3 22059 100 27 22 chr3 41400157 41400874 -176636284 + MER41-int LTR ERV1 3036 3748 -2198 2063 120 33 13 chr3 41400874 41401173 -176635985 + AluSx SINE Alu 6 310 -2 22059 100 27 22 chr3 41401173 41401704 -176635454 + MER41-int LTR ERV1 3748 4319 -1627 2340 106 0 3 chr3 41401704 41402007 -176635151 - AluSg SINE Alu -7 303 2 22059 100 27 22 chr3 41402007 41402370 -176634788 + MER41-int LTR ERV1 4319 4679 -1267 1205 202 6 10 chr3 41402718 41403030 -176634128 + AluY SINE Alu 1 311 0 5959 77 38 30 chr3 41403352 41404172 -176632986 + LTR12 LTR ERV1 1 826 0 844 232 35 89 chr3 41404478 41404652 -176632506 + MLT1H LTR MaLR 200 345 -204 1888 170 13 3 chr3 41404652 41404952 -176632206 + AluJb SINE Alu 1 303 -9 844 232 35 89 chr3 41404952 41405147 -176632011 + MLT1H LTR MaLR 345 549 0 316 329 91 57 chr3 41405297 41405704 -176631454 + L3 LINE CR1 1133 1553 -24 305 267 155 25 chr3 41405830 41405991 -176631167 + MIR SINE MIR 23 204 -58 1918 147 0 10 chr3 41406162 41406454 -176630704 - AluJo SINE Alu -23 289 1 724 189 8 23 chr3 41406479 41406611 -176630547 - FLAM_C SINE Alu -3 130 1 203 157 0 59 chr3 41407147 41407198 -176629960 + CT-rich Low_complexity Low_complexity 5 52 0 243 321 179 13 chr3 41407262 41407486 -176629672 - MIR SINE MIR 0 262 2 1987 158 3 0 chr3 41407641 41407951 -176629207 + AluSx SINE Alu 1 311 -1 190 261 0 0 chr3 41408537 41408583 -176628575 - MER5A DNA MER1_type -141 48 3 2480 80 0 3 chr3 41408589 41408901 -176628257 + AluY SINE Alu 1 311 0 2416 86 0 0 chr3 41409658 41409961 -176627197 + AluY SINE Alu 1 303 -8 1831 144 39 20 chr3 41410264 41410569 -176626589 - AluY SINE Alu 0 311 1 779 117 117 0 chr3 41410569 41410689 -176626469 - AluJb SINE Alu -177 135 2 724 133 0 62 chr3 41410743 41410871 -176626287 + AluSg/x SINE Alu 129 248 -64 25 31 0 0 chr3 41412216 41412248 -176624910 + GC_rich Low_complexity Low_complexity 1 32 0 1781 156 6 22 chr3 41412813 41413127 -176624031 + AluJb SINE Alu 1 309 -3 199 139 70 0 chr3 41413303 41413346 -176623812 - L2 LINE L2 -18 3254 3209 586 177 40 0 chr3 41413372 41413496 -176623662 + MER5B DNA MER1_type 1 129 -49 254 79 53 0 chr3 41413511 41413549 -176623609 - Alu SINE Alu -14 288 249 204 196 18 18 chr3 41413549 41413605 -176623553 + MER5B DNA MER1_type 120 175 -3 1897 119 50 4 chr3 41413675 41413952 -176623206 + AluSq SINE Alu 1 290 -23 2066 144 63 47 chr3 41414286 41414456 -176622702 - LTR39 LTR ERV1 0 783 617 1571 164 89 7 chr3 41414456 41414736 -176622422 + AluJo SINE Alu 1 303 -9 2066 144 63 47 chr3 41414736 41414948 -176622210 - LTR39 LTR ERV1 -166 617 395 1330 181 0 9 chr3 41414948 41415175 -176621983 + AluJb SINE Alu 86 310 -2 2318 128 63 16 chr3 41415175 41415395 -176621763 - LTR39 LTR ERV1 -376 407 160 2056 134 23 0 chr3 41415395 41415700 -176621458 - AluJb SINE Alu 0 312 1 2318 128 63 16 chr3 41415700 41415861 -176621297 - LTR39 LTR ERV1 -623 160 8 827 178 0 0 chr3 41415946 41416075 -176621083 - FLAM_C SINE Alu -14 129 1 1969 89 203 12 chr3 41416215 41416628 -176620530 - LTR14B LTR ERVK 0 608 1 342 256 16 8 chr3 41416754 41416875 -176620283 + L1ME3A LINE L1 5835 5956 -214 1194 78 176 54 chr3 41417280 41417485 -176619673 + MER30 DNA MER1_type 1 230 0 336 285 72 47 chr3 41417579 41417772 -176619386 - MLT1G1-int LTR MaLR -882 489 292 276 294 71 0 chr3 41417814 41417899 -176619259 - MLT1G1-int LTR MaLR -1280 91 1 776 243 81 103 chr3 41417918 41418382 -176618776 - MLT1G1 LTR MaLR 0 530 3 203 258 86 32 chr3 41418395 41418488 -176618670 - MIR SINE MIR -108 154 57 833 308 35 90 chr3 41418518 41418601 -176618557 - L2 LINE L2 -1 3271 3185 1596 149 28 25 chr3 41418601 41418883 -176618275 + AluSx SINE Alu 1 283 -29 833 308 35 90 chr3 41418883 41419833 -176617325 - L2 LINE L2 -87 3185 2274 325 127 73 0 chr3 41419884 41419939 -176617219 + L2 LINE L2 3250 3308 -5 744 145 23 30 chr3 41420140 41420271 -176616887 + FLAM_C SINE Alu 1 130 -3 2257 62 55 0 chr3 41420297 41420586 -176616572 - AluY SINE Alu -6 305 1 675 301 6 0 chr3 41420631 41420807 -176616351 + MER91B DNA MER1_type 14 190 0 1345 150 109 92 chr3 41420931 41420996 -176616162 - MLT1A1 LTR MaLR 0 365 303 1983 154 7 0 chr3 41420996 41421301 -176615857 - AluSx SINE Alu -5 307 1 1345 150 109 92 chr3 41421301 41421464 -176615694 - MLT1A1 LTR MaLR -62 303 126 1526 190 38 10 chr3 41421464 41421753 -176615405 + AluJo SINE Alu 1 297 -15 1345 150 109 92 chr3 41421753 41421882 -176615276 - MLT1A1 LTR MaLR -239 126 1 801 186 0 0 chr3 41422348 41422466 -176614692 + FLAM_C SINE Alu 1 118 -25 2021 126 30 7 chr3 41422481 41422758 -176614400 + AluSx SINE Alu 1 287 -25 186 43 0 0 chr3 41422758 41422781 -176614377 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 2021 126 30 7 chr3 41422781 41422805 -176614353 + AluSx SINE Alu 287 309 -3 225 216 0 0 chr3 41423739 41423790 -176613368 + L2 LINE L2 3263 3313 0 1837 156 0 26 chr3 41424125 41424233 -176612925 + AluJo SINE Alu 1 110 -202 1941 156 24 19 chr3 41424233 41424604 -176612554 - THE1C LTR MaLR -2 373 1 1837 156 0 26 chr3 41424604 41424803 -176612355 + AluJo SINE Alu 110 300 -12 1964 151 0 0 chr3 41425625 41425971 -176611187 + AluSq SINE Alu 1 346 0 525 255 28 0 chr3 41425972 41426117 -176611041 - L1M4 LINE L1 -843 5303 5155 1685 183 0 29 chr3 41426118 41426424 -176610734 - AluJo SINE Alu -15 297 1 1937 169 36 22 chr3 41426477 41426839 -176610319 + MLT1D LTR MaLR 139 505 0 462 240 8 8 chr3 41426847 41426968 -176610190 - L1M4 LINE L1 -1260 4886 4766 2111 109 46 0 chr3 41426975 41427260 -176609898 - AluSx SINE Alu -13 299 2 1216 251 49 2 chr3 41427426 41427837 -176609321 + L1M4 LINE L1 4181 4610 -1536 641 167 0 0 chr3 41427877 41427973 -176609185 - AluS SINE Alu -216 97 2 27 0 0 0 chr3 41429134 41429161 -176607997 + AT_rich Low_complexity Low_complexity 1 27 0 1621 134 49 65 chr3 41429508 41429660 -176607498 - MER50 LTR ERV1 0 734 588 730 33 0 0 chr3 41429660 41429750 -176607408 + L1PA4 LINE L1 6063 6152 -3 1621 134 49 65 chr3 41429750 41429904 -176607254 - MER50 LTR ERV1 -146 588 433 1041 143 30 0 chr3 41429906 41430074 -176607084 - MER50 LTR ERV1 -500 234 62 558 0 0 0 chr3 41430074 41430136 -176607022 + (TG)n Simple_repeat Simple_repeat 2 63 0 288 65 109 22 chr3 41430189 41430235 -176606923 - MSTC LTR MaLR -372 56 7 206 162 27 0 chr3 41430494 41430531 -176606627 + (TATG)n Simple_repeat Simple_repeat 2 39 0 227 328 62 8 chr3 41430590 41430718 -176606440 - L2 LINE L2 -809 2505 2371 691 199 115 0 chr3 41431272 41431428 -176605730 + FAM SINE Alu 2 175 0 2092 62 0 0 chr3 41431776 41432034 -176605124 + L1PA7 LINE L1 5897 6154 0 1550 183 32 11 chr3 41432632 41432916 -176604242 + AluJo SINE Alu 1 290 -22 814 73 15 0 chr3 41432916 41433052 -176604106 + (TCTA)n Simple_repeat Simple_repeat 4 141 0 5659 214 61 37 chr3 41433208 41434290 -176602868 + L1MB8 LINE L1 3249 4304 -1842 2097 101 59 0 chr3 41434290 41434577 -176602581 + AluSq SINE Alu 1 304 -9 5659 214 61 37 chr3 41434577 41435010 -176602148 + L1MB8 LINE L1 4304 4808 -1338 1157 182 81 69 chr3 41435010 41435345 -176601813 + MER44D DNA MER2_type 1 609 0 5659 214 61 37 chr3 41435345 41435453 -176601705 + L1MB8 LINE L1 4808 4912 -1234 4494 156 38 19 chr3 41435453 41435558 -176601600 + LTR39 LTR ERV1 1 103 -680 2573 121 3 0 chr3 41435558 41435921 -176601237 - THE1B LTR MaLR 0 364 1 4494 156 38 19 chr3 41435921 41436276 -176600882 + LTR39 LTR ERV1 103 483 -300 1747 158 39 3 chr3 41436276 41436560 -176600598 - AluJb SINE Alu -18 294 1 4494 156 38 19 chr3 41436560 41436867 -176600291 + LTR39 LTR ERV1 483 783 0 270 86 0 0 chr3 41436867 41436902 -176600256 + L1MB8 LINE L1 4909 4943 -1203 1416 186 93 21 chr3 41436908 41437061 -176600097 + L1MB8 LINE L1 5124 5265 -913 1816 164 3 19 chr3 41437061 41437372 -176599786 - AluJo SINE Alu -6 306 1 1416 186 93 21 chr3 41437372 41437728 -176599430 + L1MB8 LINE L1 5265 5677 -501 379 301 80 40 chr3 41437730 41437830 -176599328 + MER92C LTR ERV1 6 117 -437 2028 166 10 42 chr3 41437830 41438233 -176598925 + MLT1B LTR MaLR 1 390 0 379 301 80 40 chr3 41438233 41438308 -176598850 + MER92C LTR ERV1 117 188 -366 346 254 0 0 chr3 41438371 41438442 -176598716 + MER92C LTR ERV1 484 554 0 1827 194 96 15 chr3 41438443 41438912 -176598246 + L1MB8 LINE L1 5671 6177 -1 290 298 0 54 chr3 41440036 41440204 -176596954 + T-rich Low_complexity Low_complexity 2 160 0 936 177 0 19 chr3 41440344 41440502 -176596656 - FRAM SINE Alu -9 157 3 2328 78 3 0 chr3 41440869 41441197 -176595961 - AluSq SINE Alu 0 329 1 520 328 39 11 chr3 41441254 41441434 -176595724 - MIR3 SINE MIR -6 202 18 261 223 160 32 chr3 41441552 41441646 -176595512 + MIR SINE MIR 53 158 -104 398 292 36 6 chr3 41441775 41441943 -176595215 + MIR SINE MIR 78 250 -12 44073 49 2 2 chr3 41442457 41448610 -176588548 - L1PA4 LINE L1 -1 6154 1 1175 210 69 57 chr3 41448683 41449138 -176588020 - MLT1B LTR MaLR 0 390 2 345 303 28 0 chr3 41449239 41449348 -176587810 - MIR3 SINE MIR -7 201 90 365 238 112 42 chr3 41449528 41449671 -176587487 - MIR SINE MIR -47 215 63 1425 160 0 95 chr3 41450274 41450580 -176586578 - AluJb SINE Alu 0 312 36 1924 116 78 0 chr3 41450611 41450895 -176586263 + AluSq SINE Alu 1 306 -7 1469 223 67 85 chr3 41450941 41451059 -176586099 + MLT1D LTR MaLR 2 121 -384 2362 81 10 0 chr3 41451059 41451356 -176585802 + AluSq SINE Alu 1 300 -13 1469 223 67 85 chr3 41451356 41451743 -176585415 + MLT1D LTR MaLR 121 498 -7 849 182 0 0 chr3 41451995 41452138 -176585020 + FLAM_C SINE Alu 1 143 0 328 291 45 2 chr3 41452143 41452324 -176584834 + L1ME LINE L1 4643 4832 -1314 2310 107 0 3 chr3 41452821 41453129 -176584029 + AluSx SINE Alu 5 311 -1 2079 112 10 3 chr3 41453177 41453481 -176583677 + AluY SINE Alu 1 306 -5 270 261 83 89 chr3 41453521 41453822 -176583336 + L1ME LINE L1 5567 5867 -297 1399 67 0 0 chr3 41453822 41454001 -176583157 + L1PA8 LINE L1 5992 6170 -2 270 261 83 89 chr3 41454001 41454025 -176583133 + L1ME LINE L1 5867 5890 -274 213 186 47 0 chr3 41454372 41454415 -176582743 + L2 LINE L2 3223 3267 -5 24 53 0 0 chr3 41454909 41454947 -176582211 + AT_rich Low_complexity Low_complexity 1 38 0 364 217 22 11 chr3 41455172 41455264 -176581894 + LTR33 LTR ERVL 1 93 -428 204 306 83 19 chr3 41455922 41456079 -176581079 + L2 LINE L2 2890 3056 -216 2689 196 65 24 chr3 41456191 41456827 -176580331 + LTR65 LTR ERV1 8 669 0 219 186 0 0 chr3 41456880 41456923 -176580235 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 406 265 60 0 chr3 41457001 41457118 -176580040 + MIR SINE MIR 28 151 -111 282 57 0 0 chr3 41457324 41457359 -176579799 - U2 snRNA snRNA -153 35 1 696 195 32 0 chr3 41457466 41457620 -176579538 + LTR37A LTR ERV1 268 426 0 223 261 254 23 chr3 41458580 41458710 -176578448 - MIR SINE MIR -71 191 32 2196 113 7 3 chr3 41459403 41459704 -176577454 + AluSp SINE Alu 1 302 -11 253 278 56 0 chr3 41460902 41460974 -176576184 - MIR SINE MIR -70 192 117 1697 156 19 35 chr3 41460977 41461291 -176575867 + AluJo SINE Alu 1 309 -3 2072 103 24 21 chr3 41461510 41461801 -176575357 + AluSc SINE Alu 3 294 -15 23 33 0 0 chr3 41462242 41462272 -176574886 + AT_rich Low_complexity Low_complexity 1 30 0 288 309 53 0 chr3 41462996 41463090 -176574068 + MIR3 SINE MIR 58 156 -52 4589 65 36 3 chr3 41463258 41464258 -176572900 + MER11A LTR ERVK 1 1266 0 378 0 0 0 chr3 41464527 41464569 -176572589 + (TCCA)n Simple_repeat Simple_repeat 2 43 0 3391 217 45 52 chr3 41464660 41465354 -176571804 - L1ME1 LINE L1 -9 6157 5459 348 24 0 0 chr3 41465354 41465395 -176571763 + (TG)n Simple_repeat Simple_repeat 2 42 0 3391 217 45 52 chr3 41465395 41465561 -176571597 - L1ME1 LINE L1 -707 5459 5301 2286 72 11 0 chr3 41465561 41465902 -176571256 + AluSp SINE Alu 3 346 0 3391 217 45 52 chr3 41465902 41466048 -176571110 - L1ME1 LINE L1 -865 5301 5155 1685 183 0 29 chr3 41466049 41466355 -176570803 - AluJo SINE Alu -15 297 1 1960 169 36 17 chr3 41466408 41466768 -176570390 + MLT1D LTR MaLR 139 505 0 462 240 8 8 chr3 41466776 41466897 -176570261 - L1ME1 LINE L1 -1260 4886 4766 2111 109 46 0 chr3 41466904 41467189 -176569969 - AluSx SINE Alu -13 299 2 1216 251 49 2 chr3 41467355 41467766 -176569392 + L1M4 LINE L1 4181 4610 -1536 641 167 0 0 chr3 41467806 41467902 -176569256 - AluS SINE Alu -216 97 2 1109 97 7 0 chr3 41469003 41469147 -176568011 - AluSg SINE Alu -165 145 1 399 292 95 6 chr3 41469161 41469419 -176567739 - L2 LINE L2 -243 3070 2786 902 245 81 2 chr3 41469436 41469848 -176567310 + L1MC4 LINE L1 6927 7419 -623 225 132 0 0 chr3 41470019 41470057 -176567101 + (TTTTA)n Simple_repeat Simple_repeat 4 41 0 1751 184 3 19 chr3 41470256 41470571 -176566587 - AluJb SINE Alu -2 310 1 2144 123 0 3 chr3 41471512 41471814 -176565344 - AluSx SINE Alu -11 301 1 526 255 127 86 chr3 41471842 41472203 -176564955 - L2 LINE L2 0 3272 2897 1694 153 33 0 chr3 41472254 41472528 -176564630 + AluJb SINE Alu 1 283 -29 405 0 0 0 chr3 41472528 41472573 -176564585 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 219 242 0 30 chr3 41472590 41472621 -176564537 + GA-rich Low_complexity Low_complexity 4 34 -33 2438 90 3 0 chr3 41472621 41472931 -176564227 + AluSp SINE Alu 1 311 -2 219 242 0 30 chr3 41472931 41472965 -176564193 + GA-rich Low_complexity Low_complexity 34 67 0 219 270 68 101 chr3 41472972 41473120 -176564038 - L2 LINE L2 -470 2844 2704 2268 61 4 7 chr3 41473120 41473419 -176563739 + AluY SINE Alu 3 300 0 219 270 68 101 chr3 41473419 41473506 -176563652 - L2 LINE L2 -610 2704 2616 415 168 192 8 chr3 41474118 41474243 -176562915 - HAL1 LINE L1 -66 2441 2294 249 196 223 76 chr3 41474255 41474431 -176562727 - L1MC4a LINE L1 -1647 6161 5944 3549 111 0 34 chr3 41474431 41474933 -176562225 + MER75 DNA T2_type 2 487 -27 2001 151 3 3 chr3 41474933 41475245 -176561913 - AluSx SINE Alu 0 312 1 3549 111 0 34 chr3 41475245 41475273 -176561885 + MER75 DNA T2_type 487 514 0 249 196 223 76 chr3 41475273 41475320 -176561838 - L1MC4a LINE L1 -1864 5944 5905 766 294 102 10 chr3 41475323 41475616 -176561542 - MLT1I LTR MaLR 0 409 90 339 184 69 23 chr3 41475628 41475715 -176561443 - MLT1I LTR MaLR -229 180 90 2794 94 102 0 chr3 41475725 41476118 -176561040 + LTR3b LTR ERVK 1 433 -4 889 133 202 21 chr3 41476227 41476415 -176560743 + HERVK3 LTR ERVK 51 272 -6971 * 898 197 50 20 chr3 41476412 41476610 -176560548 + HERVK3 LTR ERVK 477 680 -6563 542 162 10 30 chr3 41476598 41476697 -176560461 + HERVK3 LTR ERVK 1321 1417 -5826 * 5507 179 2 5 chr3 41476689 41477901 -176559257 + HERVK3 LTR ERVK 1859 3139 -4104 1404 157 0 10 chr3 41477887 41478142 -176559016 + HERVK3 LTR ERVK 5130 5572 -373 * 2971 72 43 65 chr3 41478180 41478623 -176558535 + LTR3b LTR ERVK 1 433 -4 261 217 116 0 chr3 41478706 41478775 -176558383 - L1MC4a LINE L1 -1902 5906 5830 1357 199 62 33 chr3 41478782 41479118 -176558040 + MLT1A1 LTR MaLR 1 346 -19 973 286 33 31 chr3 41479155 41479248 -176557910 - L1MC4a LINE L1 -2056 5752 5661 4045 126 47 83 chr3 41479248 41480063 -176557095 + LTR1 LTR ERV1 1 785 0 973 286 33 31 chr3 41480063 41480077 -176557081 - L1MC4a LINE L1 -2147 5661 5649 2292 94 82 15 chr3 41480077 41480418 -176556740 + THE1B LTR MaLR 1 364 0 973 286 33 31 chr3 41480418 41480669 -176556489 - L1MC4a LINE L1 -2159 5649 5392 2392 97 0 3 chr3 41480851 41481161 -176555997 + AluSc SINE Alu 1 309 0 374 302 122 9 chr3 41481375 41481719 -176555439 - HAL1 LINE L1 -561 1946 1483 729 275 81 14 chr3 41481722 41482111 -176555047 + MLT1J LTR MaLR 1 459 -52 2167 154 55 3 chr3 41482182 41482565 -176554593 + MER57A LTR ERV1 1 403 0 289 271 126 62 chr3 41482597 41483018 -176554140 - HAL1 LINE L1 -1052 1455 1008 867 222 0 14 chr3 41483167 41483383 -176553775 - L1MA4 LINE L1 -4 6296 6084 2125 133 39 33 chr3 41483621 41483983 -176553175 + THE1B LTR MaLR 1 364 0 1873 154 38 7 chr3 41484278 41484570 -176552588 + AluJb SINE Alu 1 301 -11 1317 233 74 45 chr3 41484702 41485188 -176551970 + LTR24B LTR ERV1 70 569 -7 232 352 57 39 chr3 41485190 41485471 -176551687 + L1ME4a LINE L1 5296 5581 -540 2344 58 31 0 chr3 41485498 41485790 -176551368 + AluY SINE Alu 1 301 -10 33 0 0 0 chr3 41485866 41485899 -176551259 + AT_rich Low_complexity Low_complexity 1 33 0 325 326 138 16 chr3 41485925 41486170 -176550988 + L1ME4a LINE L1 5780 6070 -51 2098 161 93 65 chr3 41486170 41486666 -176550492 + LTR54 LTR ERV1 1 510 0 325 326 138 16 chr3 41486666 41486724 -176550434 + L1ME4a LINE L1 6070 6120 -1 2055 198 128 48 chr3 41487342 41488013 -176549145 - MER50 LTR ERV1 0 734 10 4392 116 21 45 chr3 41488057 41488763 -176548395 + LTR8 LTR ERV1 1 689 -2 1419 161 106 69 chr3 41488825 41488946 -176548212 - LTR7 LTR ERV1 0 450 335 2426 78 3 0 chr3 41488946 41489242 -176547916 - AluY SINE Alu -14 297 1 1419 161 106 69 chr3 41489242 41489554 -176547604 - LTR7 LTR ERV1 -115 335 1 23906 217 34 37 chr3 41489554 41497399 -176539759 - HERVH LTR ERV1 0 7713 1 1257 164 89 115 chr3 41497399 41497861 -176539297 - LTR7 LTR ERV1 0 450 1 628 210 68 139 chr3 41497929 41498080 -176539078 - MER110A LTR ERV1 0 468 351 1210 167 196 54 chr3 41498080 41498523 -176538635 - LTR54 LTR ERV1 0 510 5 628 210 68 139 chr3 41498523 41498695 -176538463 - MER110A LTR ERV1 -117 351 168 1353 167 110 17 chr3 41498809 41499108 -176538050 - MER31B LTR ERV1 0 466 140 453 36 0 0 chr3 41499109 41499164 -176537994 + (TTCC)n Simple_repeat Simple_repeat 1 55 0 412 191 45 0 chr3 41499164 41499253 -176537905 - AluSg/x SINE Alu -3 309 217 1040 82 24 6 chr3 41499260 41499430 -176537728 + (TTTC)n Simple_repeat Simple_repeat 3 175 0 1557 181 0 29 chr3 41499431 41499712 -176537446 - AluJb SINE Alu -39 273 1 710 182 7 27 chr3 41499713 41499861 -176537297 - MER31B LTR ERV1 -321 145 1 894 230 90 50 chr3 41500443 41500843 -176536315 + LTR56 LTR ERV1 9 424 -21 452 139 0 0 chr3 41500812 41500884 -176536274 + LTR24B LTR ERV1 498 569 -7 * 1922 154 3 7 chr3 41501048 41501354 -176535804 + AluJb SINE Alu 1 305 -7 2030 135 51 38 chr3 41501362 41501732 -176535426 - THE1C LTR MaLR 0 375 1 2107 115 11 0 chr3 41502905 41503183 -176533975 + AluSx SINE Alu 3 318 0 201 57 0 29 chr3 41503183 41503218 -176533940 + (CAAAA)n Simple_repeat Simple_repeat 2 110 0 343 250 26 0 chr3 41503270 41503346 -176533812 - MER2 DNA MER2_type -1 344 267 1783 171 0 11 chr3 41503380 41503667 -176533491 + AluJb SINE Alu 12 295 -17 206 135 0 27 chr3 41503674 41503711 -176533447 + (TTCTC)n Simple_repeat Simple_repeat 5 40 0 26 0 0 0 chr3 41503712 41503738 -176533420 + AT_rich Low_complexity Low_complexity 1 26 0 368 313 156 35 chr3 41503936 41504307 -176532851 - L2 LINE L2 -2 3270 2855 2119 92 3 57 chr3 41504318 41504634 -176532524 - AluSp SINE Alu -14 299 1 571 211 111 80 chr3 41505180 41505379 -176531779 - L1ME3A LINE L1 -27 6143 5939 1891 157 20 0 chr3 41505379 41505672 -176531486 - AluJo SINE Alu -13 299 1 2250 80 0 14 chr3 41505682 41506001 -176531157 - AluSg SINE Alu 0 315 1 2069 124 7 0 chr3 41506009 41506291 -176530867 - AluSg SINE Alu -26 284 1 1369 171 13 81 chr3 41506319 41506629 -176530529 + AluJo SINE Alu 1 289 -23 2045 139 14 0 chr3 41506681 41506976 -176530182 + AluSx SINE Alu 1 299 -13 380 245 80 18 chr3 41506976 41507139 -176530019 - L1MC4 LINE L1 -28 8014 7842 2251 134 24 21 chr3 41507543 41507917 -176529241 + THE1C LTR MaLR 1 375 0 3768 138 44 13 chr3 41507953 41508569 -176528589 - MER41B LTR ERV1 0 635 1 8598 104 30 12 chr3 41508569 41509824 -176527334 - MER41B-int LTR ERV1 0 5946 4669 1727 133 32 7 chr3 41509824 41510102 -176527056 + AluSg SINE Alu 13 297 -13 3855 131 23 10 chr3 41510202 41510807 -176526351 - MER41B LTR ERV1 -22 613 1 2196 101 17 0 chr3 41510890 41511186 -176525972 + AluSq SINE Alu 1 301 -12 3807 118 31 54 chr3 41511366 41511532 -176525626 + MER41B LTR ERV1 1 169 -466 2604 58 0 10 chr3 41511532 41511841 -176525317 + AluY SINE Alu 1 306 -5 3807 118 31 54 chr3 41511841 41512221 -176524937 + MER41B LTR ERV1 169 532 -103 1509 164 95 0 chr3 41512221 41512495 -176524663 + AluJb SINE Alu 1 300 -12 3807 118 31 54 chr3 41512495 41512597 -176524561 + MER41B LTR ERV1 532 635 0 524 194 104 0 chr3 41512616 41512750 -176524408 + MIR SINE MIR 59 206 -56 650 238 68 0 chr3 41513251 41513398 -176523760 - FRAM SINE Alu -9 157 1 601 143 61 0 chr3 41513521 41513619 -176523539 - HY1 scRNA scRNA -3 109 6 2321 92 7 3 chr3 41514732 41515037 -176522121 - AluSp SINE Alu -7 306 1 55 16 0 0 chr3 41515073 41515135 -176522023 + AT_rich Low_complexity Low_complexity 1 62 0 2264 78 10 86 chr3 41515389 41515772 -176521386 - L1PA16 LINE L1 -9 6157 5804 3956 104 116 34 chr3 41515857 41516946 -176520212 + MER11A LTR ERVK 1 1232 -4 211 407 34 0 chr3 41516983 41517101 -176520057 - L2 LINE L2 -188 3084 2963 1676 238 51 16 chr3 41517101 41517533 -176519625 - MLT1G LTR MaLR 0 590 144 2145 128 6 6 chr3 41517537 41517849 -176519309 + AluSx SINE Alu 1 312 0 228 131 0 131 chr3 41517913 41517974 -176519184 - MLT1G LTR MaLR -415 134 82 1815 165 0 3 chr3 41518652 41518943 -176518215 - AluJo SINE Alu -22 290 1 566 185 0 0 chr3 41518987 41519079 -176518079 - AluSc SINE Alu -95 214 123 2189 115 0 0 chr3 41519084 41519372 -176517786 - AluSx SINE Alu -24 288 1 397 146 31 73 chr3 41519373 41519469 -176517689 - L1M4 LINE L1 -506 5668 5577 251 268 202 35 chr3 41519511 41519652 -176517506 - L1M4 LINE L1 -2347 3799 3636 2232 104 0 13 chr3 41519824 41520122 -176517036 - AluSg SINE Alu -16 294 1 186 118 0 0 chr3 41520134 41520168 -176516990 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 2107 120 0 10 chr3 41520168 41520450 -176516708 - AluSg SINE Alu -25 285 5 1118 228 20 63 chr3 41520646 41520875 -176516283 - L1MB8 LINE L1 -10 6168 5958 1890 161 17 3 chr3 41520875 41521173 -176515985 + AluSx SINE Alu 1 302 -10 1118 228 20 63 chr3 41521173 41521294 -176515864 - L1MB8 LINE L1 -220 5958 5833 359 329 27 13 chr3 41521345 41521494 -176515664 - L1MEc LINE L1 -5908 488 338 831 136 0 8 chr3 41522004 41522129 -176515029 - FLAM_C SINE Alu -9 124 1 1145 121 6 12 chr3 41522647 41522820 -176514338 - FRAM SINE Alu -4 172 1 1676 181 3 3 chr3 41523149 41523437 -176513721 + AluJo SINE Alu 1 288 -24 1423 145 16 8 chr3 41523466 41523708 -176513450 + L1MB3 LINE L1 5925 6168 -15 2137 141 0 0 chr3 41523911 41524216 -176512942 - AluSq SINE Alu -8 305 1 1837 156 0 26 chr3 41525037 41525236 -176511922 - AluJo SINE Alu -12 300 110 1941 156 24 19 chr3 41525236 41525607 -176511551 + THE1C LTR MaLR 1 373 -2 1837 156 0 26 chr3 41525607 41525715 -176511443 - AluJo SINE Alu -202 110 1 225 216 0 0 chr3 41526050 41526101 -176511057 - L2 LINE L2 0 3313 3263 2021 126 30 7 chr3 41527036 41527060 -176510098 - AluSx SINE Alu -3 309 287 186 43 0 0 chr3 41527060 41527083 -176510075 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 2021 126 30 7 chr3 41527083 41527360 -176509798 - AluSx SINE Alu -25 287 1 801 186 0 0 chr3 41527375 41527493 -176509665 - FLAM_C SINE Alu -25 118 1 2252 96 28 0 chr3 41527829 41528120 -176509038 + AluSx SINE Alu 1 299 -13 2276 94 13 7 chr3 41528391 41528699 -176508459 - AluSx SINE Alu -2 310 1 188 45 0 0 chr3 41528845 41528867 -176508291 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2395 93 0 3 chr3 41629041 41629352 -176407806 + AluSx SINE Alu 1 310 -2 1883 133 0 29 chr3 41630033 41630341 -176406817 + AluSq SINE Alu 1 299 -14 409 132 0 0 chr3 41630521 41630589 -176406569 + MER2 DNA MER2_type 139 206 -139 363 276 0 0 chr3 41630616 41630692 -176406466 + MER2 DNA MER2_type 270 345 0 441 0 0 0 chr3 41631577 41631626 -176405532 + (CA)n Simple_repeat Simple_repeat 2 50 0 324 0 0 0 chr3 41631710 41631746 -176405412 + (CA)n Simple_repeat Simple_repeat 2 37 0 224 180 33 0 chr3 41631774 41631835 -176405323 + (CA)n Simple_repeat Simple_repeat 2 64 0 1628 169 74 0 chr3 41632239 41632523 -176404635 - AluJo SINE Alu -7 305 1 522 331 16 23 chr3 41634120 41634377 -176402781 - L1ME LINE L1 -516 5605 5351 326 323 102 0 chr3 41634416 41634583 -176402575 + L1ME4a LINE L1 5766 5949 -172 1614 105 4 9 chr3 41635294 41635523 -176401635 + AluSg/x SINE Alu 85 312 0 502 221 38 8 chr3 41635540 41635671 -176401487 + L1ME4a LINE L1 5976 6110 -11 1044 143 18 18 chr3 41635684 41635852 -176401306 - FRAM SINE Alu -4 172 5 2250 95 14 0 chr3 41636877 41637171 -176399987 - AluSx SINE Alu -14 298 1 184 250 0 0 chr3 41637382 41637426 -176399732 - L2 LINE L2 -11 3261 3218 * 256 302 107 31 chr3 41637396 41637555 -176399603 - MIR SINE MIR -19 243 73 1510 169 95 21 chr3 41637772 41638110 -176399048 + MLT1A1 LTR MaLR 1 363 -2 233 339 0 17 chr3 41638285 41638403 -176398755 + L1MB2 LINE L1 5254 5369 -2439 394 241 106 53 chr3 41638759 41638929 -176398229 - MIR3 SINE MIR 0 208 30 236 200 161 15 chr3 41639174 41639304 -176397854 - L1ME4a LINE L1 -155 5966 5818 2157 120 0 0 chr3 41639311 41639602 -176397556 + AluSx SINE Alu 9 299 -13 1822 173 0 10 chr3 41640031 41640332 -176396826 + AluJb SINE Alu 1 298 -14 1774 174 0 17 chr3 41640728 41641027 -176396131 + AluJb SINE Alu 1 294 -18 805 331 49 39 chr3 41641090 41641576 -176395582 + L2 LINE L2 2819 3309 -4 936 161 1 105 chr3 41641632 41641887 -176395271 + L1MB2 LINE L1 5935 6164 -7 1181 193 15 0 chr3 41642279 41642481 -176394677 + AluJo SINE Alu 87 291 -21 2302 91 0 26 chr3 41643285 41643593 -176393565 + AluSx SINE Alu 1 300 -12 625 264 137 18 chr3 41644120 41644347 -176392811 - MIR SINE MIR 0 262 9 229 207 27 140 chr3 41644391 41644541 -176392617 + HAL1b LINE L1 597 729 -619 481 181 14 116 chr3 41644541 41644636 -176392522 + MER96B DNA MER1_type? 1 79 -338 950 223 6 0 chr3 41644636 41644802 -176392356 - FAM SINE Alu -8 167 1 481 181 14 116 chr3 41644802 41644844 -176392314 + MER96B DNA MER1_type? 79 124 -293 201 174 43 14 chr3 41644849 41644918 -176392240 + GA-rich Low_complexity Low_complexity 3 73 0 715 217 89 84 chr3 41644972 41645396 -176391762 + MLT1A2 LTR MaLR 1 374 0 691 148 15 163 chr3 41645396 41645599 -176391559 - MER96B DNA MER1_type? -242 175 3 2064 115 14 7 chr3 41645621 41645917 -176391241 - AluSg SINE Alu -12 298 1 399 228 81 0 chr3 41649179 41649302 -176387856 + Charlie8 DNA MER1_type 38 170 -2247 551 163 31 75 chr3 41650560 41650720 -176386438 - MIR SINE MIR -46 216 64 1509 167 118 7 chr3 41652616 41652921 -176384237 - MER44D DNA MER2_type 0 609 1 1366 171 5 0 chr3 41653627 41653844 -176383314 - MER58A DNA MER1_type 0 224 7 248 286 86 43 chr3 41654191 41654331 -176382827 - L1ME LINE L1 -574 5547 5402 541 173 0 18 chr3 41654983 41655093 -176382065 + L1MD3 LINE L1 7758 7865 -130 825 163 7 7 chr3 41655137 41655278 -176381880 + L1PB1 LINE L1 5998 6138 -13 21 0 0 0 chr3 41655280 41655301 -176381857 + AT_rich Low_complexity Low_complexity 1 21 0 856 182 136 6 chr3 41655944 41656120 -176381038 + MER63A DNA MER1_type 2 200 -10 388 296 129 36 chr3 41657138 41657549 -176379609 - L2 LINE L2 -50 3222 2763 320 235 110 44 chr3 41658152 41658288 -176378870 - MIR SINE MIR -20 242 98 222 37 0 0 chr3 41658352 41658376 -176378782 + (GGGAGA)n Simple_repeat Simple_repeat 1 51 0 222 37 0 0 chr3 41658376 41658403 -176378755 + (GGGAGA)n Simple_repeat Simple_repeat 5 31 0 226 236 18 0 chr3 41658411 41658466 -176378692 + GA-rich Low_complexity Low_complexity 4 59 0 1756 209 83 5 chr3 41659632 41659795 -176377363 + MER47B DNA MER2_type 1 150 -2173 1456 142 63 32 chr3 41659795 41660048 -176377110 - AluJo SINE Alu -17 295 35 1756 209 83 5 chr3 41660048 41660064 -176377094 + MER47B DNA MER2_type 150 163 -2160 2198 151 56 58 chr3 41660064 41660274 -176376884 + MSTB1 LTR MaLR 4 213 -219 1938 130 0 21 chr3 41660274 41660558 -176376600 + AluJb SINE Alu 7 284 -28 539 29 0 14 chr3 41660558 41660628 -176376530 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 2198 151 56 58 chr3 41660628 41660846 -176376312 + MSTB1 LTR MaLR 211 432 0 1756 209 83 5 chr3 41660846 41661052 -176376106 + MER47B DNA MER2_type 163 417 -1 380 189 151 19 chr3 41661407 41661513 -176375645 + MIR SINE MIR 65 184 -78 2581 58 0 3 chr3 41661660 41661969 -176375189 + AluY SINE Alu 1 308 -3 2899 7 0 0 chr3 41663796 41664105 -176373053 + AluYb8 SINE Alu 1 309 -9 374 0 0 21 chr3 41664779 41664826 -176372332 + (TG)n Simple_repeat Simple_repeat 1 46 0 2523 161 61 36 chr3 41665499 41666007 -176371151 + MER41B LTR ERV1 114 475 -11 1677 188 16 10 chr3 41667208 41667516 -176369642 + AluJo SINE Alu 1 310 -2 279 79 0 0 chr3 41668326 41668364 -176368794 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 297 291 149 0 chr3 41668367 41668508 -176368650 - L2 LINE L2 -9 3304 3143 1758 159 6 62 chr3 41668512 41668832 -176368326 + AluJb SINE Alu 1 302 -10 329 314 16 8 chr3 41669322 41669443 -176367715 + CT-rich Low_complexity Low_complexity 3 124 0 1736 142 37 24 chr3 41671079 41671375 -176365783 + AluJb SINE Alu 1 300 -12 2161 118 14 0 chr3 41672016 41672313 -176364845 - AluSx SINE Alu -11 301 1 2247 121 0 0 chr3 41672358 41672655 -176364503 - AluSg SINE Alu -12 298 2 488 308 107 18 chr3 41672771 41673099 -176364059 + L1ME4a LINE L1 5494 5850 -271 2011 148 48 9 chr3 41673173 41673504 -176363654 - MER2 DNA MER2_type 0 344 1 400 159 16 0 chr3 41673509 41673572 -176363586 + Tigger2 DNA MER2_type 4 67 -2651 * 2019 118 101 27 chr3 41673564 41673786 -176363372 + Tigger2 DNA MER2_type 2273 2534 -184 2139 129 10 6 chr3 41673786 41674097 -176363061 + AluSx SINE Alu 1 312 0 2019 118 101 27 chr3 41674097 41674239 -176362919 + Tigger2 DNA MER2_type 2534 2664 -54 2862 134 92 29 chr3 41674795 41674836 -176362322 - MER34C LTR ERV1 -2 583 546 4492 152 40 4 chr3 41674836 41675533 -176361625 - MER72 LTR ERV1 0 722 1 2862 134 92 29 chr3 41675533 41676036 -176361122 - MER34C LTR ERV1 -39 546 5 1475 202 75 62 chr3 41676252 41676707 -176360451 - MLT1C LTR MaLR -4 463 3 379 241 106 7 chr3 41677063 41677204 -176359954 - L1MC5 LINE L1 -48 7913 7759 337 306 66 10 chr3 41677214 41677410 -176359748 + L1ME4a LINE L1 5861 6067 -54 1785 219 13 11 chr3 41678674 41679053 -176358105 + L1MDb LINE L1 659 1038 -5371 941 182 19 0 chr3 41679062 41679221 -176357937 + MER58B DNA MER1_type 180 341 0 1286 235 106 37 chr3 41679913 41680347 -176356811 - MER110A LTR ERV1 0 468 5 1966 120 27 20 chr3 41680363 41680662 -176356496 + AluSp SINE Alu 1 301 -12 183 268 0 0 chr3 41682090 41682131 -176355027 - L2 LINE L2 -12 3301 3261 293 281 75 20 chr3 41682217 41682363 -176354795 - MER20 DNA MER1_type -1 218 65 302 0 0 26 chr3 41682433 41682472 -176354686 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 1665 159 11 11 chr3 41682473 41682656 -176354502 - AluJb SINE Alu 0 310 125 207 24 24 48 chr3 41682656 41682698 -176354460 + (TTG)n Simple_repeat Simple_repeat 2 42 0 1665 159 11 11 chr3 41682698 41682824 -176354334 - AluJb SINE Alu -184 126 1 308 261 113 91 chr3 41683476 41683646 -176353512 - L2 LINE L2 -58 3255 3077 2028 122 3 7 chr3 41683646 41683949 -176353209 - AluSx SINE Alu -10 302 1 308 261 113 91 chr3 41683949 41684008 -176353150 - L2 LINE L2 -236 3077 3021 326 41 0 20 chr3 41684682 41684731 -176352427 + (CAAAAA)n Simple_repeat Simple_repeat 1 48 0 21 0 0 0 chr3 41687128 41687149 -176350009 + AT_rich Low_complexity Low_complexity 1 21 0 314 246 8 76 chr3 41689925 41690043 -176347115 + L2 LINE L2 2904 3013 -300 1991 160 0 0 chr3 41690385 41690679 -176346479 + AluJo SINE Alu 3 296 -16 868 121 8 30 chr3 41690742 41690874 -176346284 - FLAM_C SINE Alu -4 129 1 2333 87 10 7 chr3 41691446 41691755 -176345403 + AluY SINE Alu 1 310 -1 976 203 149 100 chr3 41691941 41692430 -176344728 - MER34B LTR ERV1 -48 517 5 229 321 69 63 chr3 41692442 41692601 -176344557 - MIR3 SINE MIR -46 162 3 1795 151 36 4 chr3 41693430 41693708 -176343450 - AluJb SINE Alu -25 287 1 870 255 55 19 chr3 41693927 41694237 -176342921 + L1MC4a LINE L1 5558 5878 -1930 1061 116 74 5 chr3 41694322 41694511 -176342647 - L1MA8 LINE L1 -5 6286 6085 2386 129 6 18 chr3 41695088 41695429 -176341729 - MER1B DNA MER1_type 0 337 1 5919 194 56 38 chr3 41695815 41696411 -176340747 + L1M3 LINE L1 3724 4308 -1872 1119 188 0 0 chr3 41696411 41696576 -176340582 - FAM SINE Alu -10 165 1 5919 194 56 38 chr3 41696576 41697887 -176339271 + L1M3 LINE L1 4308 5655 -525 2247 92 0 7 chr3 41697892 41698176 -176338982 + AluSx SINE Alu 1 282 -30 1772 165 0 0 chr3 41698223 41698490 -176338668 + AluSx SINE Alu 33 299 -13 272 183 135 48 chr3 41698518 41698622 -176338536 - L1ME LINE L1 -394 5727 5615 326 110 61 24 chr3 41698640 41698722 -176338436 + CT-rich Low_complexity Low_complexity 1 85 0 1960 119 0 4 chr3 41698725 41698864 -176338294 - AluSx SINE Alu -44 268 129 216 0 0 0 chr3 41698864 41698888 -176338270 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1960 119 0 4 chr3 41698888 41699017 -176338141 - AluSx SINE Alu -183 129 1 24 0 0 0 chr3 41699185 41699209 -176337949 + AT_rich Low_complexity Low_complexity 1 24 0 324 0 0 0 chr3 41699214 41699250 -176337908 + (TA)n Simple_repeat Simple_repeat 2 37 0 2050 151 0 0 chr3 41699253 41699565 -176337593 - AluSx SINE Alu 0 312 1 14355 213 32 11 chr3 41699565 41699926 -176337232 - L1PB1 LINE L1 -5 7565 7213 389 97 14 0 chr3 41699926 41699998 -176337160 + (TA)n Simple_repeat Simple_repeat 1 73 0 14355 213 32 11 chr3 41699998 41702771 -176334387 - L1PB1 LINE L1 -357 7213 3903 2383 68 7 3 chr3 41702771 41703063 -176334095 - AluY SINE Alu -18 293 1 14355 213 32 11 chr3 41703063 41704648 -176332510 - L1PB1 LINE L1 -3667 3903 2353 4842 176 70 17 chr3 41704657 41705586 -176331572 - L1PB1 LINE L1 -5883 1683 706 3900 177 54 5 chr3 41706119 41706876 -176330282 - L1MB5 LINE L1 -8 6166 5373 1889 280 162 13 chr3 41706924 41707842 -176329316 + L2 LINE L2 57 1111 -2203 2232 94 0 27 chr3 41707889 41708187 -176328971 - AluSx SINE Alu -20 292 3 206 269 19 0 chr3 41708191 41708243 -176328915 - L2 LINE L2 -234 3079 3027 2020 128 20 0 chr3 41708244 41708542 -176328616 - AluSx SINE Alu 0 312 9 453 258 138 66 chr3 41709519 41710103 -176327055 + L2 LINE L2 2630 3268 -45 211 216 0 0 chr3 41710115 41710152 -176327006 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 2379 262 107 35 chr3 41712085 41713531 -176323627 + L2 LINE L2 1784 3312 -1 1674 158 4 4 chr3 41715866 41716126 -176321032 - AluSx SINE Alu -15 297 38 1353 197 120 62 chr3 41716513 41716945 -176320213 + MSTB2 LTR MaLR 1 457 0 23 33 0 0 chr3 41718854 41718884 -176318274 + AT_rich Low_complexity Low_complexity 1 30 0 191 299 90 0 chr3 41718909 41718976 -176318182 - MIR3 SINE MIR -8 200 128 470 196 176 0 chr3 41719181 41719283 -176317875 + FLAM_C SINE Alu 1 120 -23 297 0 0 0 chr3 41719283 41719316 -176317842 + (TAA)n Simple_repeat Simple_repeat 2 34 0 196 210 74 25 chr3 41719498 41719579 -176317579 + L2 LINE L2 2625 2709 -605 351 0 0 0 chr3 41719656 41719673 -176317485 + (CA)n Simple_repeat Simple_repeat 1 56 0 351 0 0 0 chr3 41719673 41719712 -176317446 + (CA)n Simple_repeat Simple_repeat 1 39 0 978 209 91 88 chr3 41720454 41720918 -176316240 + L1MC4 LINE L1 7450 7914 -128 2332 101 39 28 chr3 41720918 41721274 -176315884 + THE1B LTR MaLR 1 360 -4 231 273 0 30 chr3 41721346 41721412 -176315746 + GA-rich Low_complexity Low_complexity 3 66 0 335 200 40 48 chr3 41721412 41721476 -176315682 + L1MC4 LINE L1 7919 7983 -59 2270 95 174 8 chr3 41721476 41721843 -176315315 + MSTA LTR MaLR 1 428 0 335 200 40 48 chr3 41721843 41721903 -176315255 + L1MC4 LINE L1 7983 8042 0 1280 164 81 77 chr3 41722827 41723137 -176314021 + AluJo SINE Alu 1 311 -1 337 234 108 44 chr3 41723601 41723759 -176313399 + MIR SINE MIR 76 243 -19 395 254 119 11 chr3 41724055 41724240 -176312918 - MIR SINE MIR -35 227 23 787 272 52 0 chr3 41724962 41725153 -176312005 + MER58A DNA MER1_type 1 201 -23 1817 174 0 7 chr3 41725168 41725449 -176311709 - AluJo SINE Alu -23 289 11 2281 102 0 13 chr3 41725478 41725791 -176311367 + AluSx SINE Alu 1 309 -3 23 54 0 0 chr3 41725849 41725886 -176311272 + AT_rich Low_complexity Low_complexity 1 37 0 2338 98 20 0 chr3 41726136 41726442 -176310716 - AluSp SINE Alu -1 312 1 1613 225 103 147 chr3 41726708 41728378 -176308780 + L2 LINE L2 812 2407 -907 550 273 126 39 chr3 41728407 41728638 -176308520 + MLT1H LTR MaLR 20 298 -251 219 117 83 50 chr3 41728917 41728977 -176308181 + A-rich Low_complexity Low_complexity 3 64 0 466 279 86 38 chr3 41728985 41729170 -176307988 + L2 LINE L2 2407 2612 -702 2373 86 0 3 chr3 41729170 41729462 -176307696 - AluSg SINE Alu -19 291 1 466 279 86 38 chr3 41729462 41729566 -176307592 + L2 LINE L2 2612 2710 -604 387 236 55 92 chr3 41729771 41730367 -176306791 - L1ME3A LINE L1 -78 6328 5652 929 225 142 52 chr3 41730565 41731696 -176305462 - L1ME3A LINE L1 -1056 5326 4043 388 263 94 91 chr3 41731703 41732590 -176304568 - L1ME3A LINE L1 -2587 3795 2901 2374 98 0 6 chr3 41732590 41732905 -176304253 - AluSq SINE Alu 0 313 1 388 263 94 91 chr3 41732905 41733297 -176303861 - L1ME3A LINE L1 -3481 2901 2512 252 266 59 59 chr3 41733290 41733501 -176303657 - L1MEd LINE L1 -4863 1509 1252 * 596 248 105 0 chr3 41733808 41733964 -176303194 - FRAM SINE Alu 0 170 1 1607 98 18 0 chr3 41734595 41734820 -176302338 - AluSg/x SINE Alu -5 307 79 2402 95 0 0 chr3 41734822 41735118 -176302040 - AluSc SINE Alu -13 296 1 1923 144 38 27 chr3 41735259 41735603 -176301555 + THE1B LTR MaLR 1 428 0 2193 125 7 0 chr3 41736589 41736894 -176300264 - AluSx SINE Alu -5 307 1 2363 97 10 0 chr3 41737814 41738123 -176299035 + AluSx SINE Alu 1 312 0 459 214 205 14 chr3 41738275 41738485 -176298673 - L1MEd LINE L1 -5077 1307 1058 5118 140 98 15 chr3 41738499 41739593 -176297565 - L1MA4A LINE L1 0 7005 5829 1416 184 8 8 chr3 41739694 41739939 -176297219 - AluJb SINE Alu -45 267 23 8926 164 55 88 chr3 41739940 41741201 -176295957 - L1MA4A LINE L1 -1296 5552 4251 620 202 0 0 chr3 41741201 41741310 -176295848 - FLAM_A SINE Alu -10 132 24 233 149 27 135 chr3 41741310 41741384 -176295774 - AluSp SINE Alu -123 180 115 8926 164 55 88 chr3 41741384 41741778 -176295380 - L1MA4A LINE L1 -2596 4252 3847 2179 110 0 0 chr3 41741778 41742070 -176295088 - AluSg SINE Alu -18 292 1 8926 164 55 88 chr3 41742070 41742651 -176294507 - L1MA4A LINE L1 -3001 3847 3212 8120 201 102 14 chr3 41742651 41742871 -176294287 - L1MA4A LINE L1 -3842 3006 2807 2283 104 7 0 chr3 41742871 41743179 -176293979 - AluY SINE Alu -1 310 1 8120 201 102 14 chr3 41743179 41745636 -176291522 - L1MA4A LINE L1 -4041 2807 4 511 191 191 16 chr3 41745679 41745908 -176291250 - L1M3d LINE L1 -4971 1332 777 1830 118 8 0 chr3 41746823 41747086 -176290072 + AluSg SINE Alu 46 310 0 560 268 85 24 chr3 41747159 41747405 -176289753 + L2 LINE L2 1546 1806 -1508 2574 60 7 0 chr3 41747405 41747707 -176289451 - AluSq SINE Alu -9 304 1 330 264 57 9 chr3 41747903 41748009 -176289149 + L1MC5 LINE L1 7317 7427 -534 356 264 28 0 chr3 41748081 41748187 -176288971 - MIR SINE MIR -21 241 133 745 184 145 6 chr3 41748187 41748366 -176288792 - MER82 DNA MER2_type -251 402 199 858 228 66 0 chr3 41748742 41748939 -176288219 - MER82 DNA MER2_type 0 653 444 245 268 78 56 chr3 41748970 41749112 -176288046 + MIR SINE MIR 2 146 -116 340 237 40 0 chr3 41749189 41749265 -176287893 - MER82 DNA MER2_type -574 79 1 870 147 7 7 chr3 41749384 41749527 -176287631 - MER82 DNA MER2_type -510 143 1 5086 66 31 1 chr3 41749657 41750305 -176286853 - PABL_B LTR ERV1 0 667 1 286 233 27 0 chr3 41750332 41750405 -176286753 - MIR SINE MIR -10 252 178 631 265 39 11 chr3 41750441 41750622 -176286536 - MIR SINE MIR -7 255 70 2393 85 3 0 chr3 41750790 41751084 -176286074 - AluSp SINE Alu -18 295 1 242 248 51 0 chr3 41751961 41752098 -176285060 + (TATAA)n Simple_repeat Simple_repeat 1 144 0 2419 89 0 6 chr3 41752113 41752428 -176284730 - AluSp SINE Alu 0 313 1 783 189 90 56 chr3 41754444 41754677 -176282481 - L1ME3 LINE L1 -43 6119 5879 734 234 52 5 chr3 41754702 41754894 -176282264 - L1ME3 LINE L1 -349 5813 5613 2478 88 0 0 chr3 41755563 41755870 -176281288 - AluSx SINE Alu -5 307 1 1049 160 128 0 chr3 41756544 41756731 -176280427 - MER46A DNA MER2_type 0 236 26 23 105 0 0 chr3 41756915 41757001 -176280157 + AT_rich Low_complexity Low_complexity 1 86 0 1676 164 4 4 chr3 41757649 41757930 -176279228 + AluSx SINE Alu 31 311 -1 852 295 80 23 chr3 41757931 41758513 -176278645 + L2 LINE L2 2707 3312 -1 293 257 100 43 chr3 41758621 41758761 -176278397 + L2 LINE L2 2673 2820 -494 1039 214 0 0 chr3 41758984 41759162 -176277996 - MER45A DNA AcHobo 0 178 1 527 148 87 17 chr3 41760015 41760130 -176277028 + MER112 DNA MER1_type 132 254 -6 864 141 0 49 chr3 41767578 41767720 -176269438 - AluJo SINE Alu -177 135 1 225 240 0 40 chr3 41769055 41769130 -176268028 + A-rich Low_complexity Low_complexity 2 73 0 217 194 65 81 chr3 41769297 41769359 -176267799 - L2 LINE L2 -26 3246 3186 315 344 8 15 chr3 41769653 41769784 -176267374 + MIR SINE MIR 119 248 -14 275 371 0 0 chr3 41770752 41770884 -176266274 + MER117 DNA MER1_type 39 170 -27 262 243 94 87 chr3 41771006 41771294 -176265864 + L1MC3 LINE L1 5815 6104 -1681 * 1218 190 78 18 chr3 41771086 41771370 -176265788 + L1MB7 LINE L1 5884 6184 0 536 291 13 7 chr3 41771629 41771780 -176265378 + L2 LINE L2 2169 2320 -994 2017 216 65 17 chr3 41771783 41772245 -176264913 + MLT1D LTR MaLR 4 487 -18 1481 260 139 33 chr3 41772259 41772859 -176264299 + L2 LINE L2 2320 2855 -458 187 53 26 26 chr3 41772859 41772897 -176264261 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 2047 129 0 0 chr3 41772899 41773179 -176263979 - AluSx SINE Alu -32 280 1 1481 260 139 33 chr3 41773179 41773434 -176263724 + L2 LINE L2 2855 3274 -39 299 57 0 0 chr3 41774423 41774458 -176262700 + MER4E LTR ERV1 655 689 -77 198 0 0 0 chr3 41774458 41774480 -176262678 + (A)n Simple_repeat Simple_repeat 1 22 0 812 204 149 0 chr3 41774633 41774814 -176262344 - MER3 DNA MER1_type -1 208 1 528 193 34 0 chr3 41775548 41775667 -176261491 + MER5A DNA MER1_type 16 138 -51 268 246 14 0 chr3 41775890 41775959 -176261199 - L1ME2 LINE L1 -13 6151 6082 689 183 38 0 chr3 41775987 41776118 -176261040 - L1MB2 LINE L1 -54 6117 5982 195 244 0 0 chr3 41776121 41776162 -176260996 + MER5A DNA MER1_type 143 183 -6 220 121 0 0 chr3 41776836 41776869 -176260289 - MIR SINE MIR -11 251 219 2279 122 0 0 chr3 41777782 41778093 -176259065 - AluY SINE Alu 0 311 1 817 269 67 97 chr3 41779007 41779722 -176257436 + L1MC4a LINE L1 5266 5959 -1849 23 0 0 0 chr3 41779722 41779745 -176257413 + AT_rich Low_complexity Low_complexity 1 23 0 2138 138 117 69 chr3 41780256 41780281 -176256877 + MLT1D LTR MaLR 5 27 -478 1953 122 62 3 chr3 41780281 41780569 -176256589 + AluSx SINE Alu 1 305 -7 2138 138 117 69 chr3 41780569 41781020 -176256138 + MLT1D LTR MaLR 27 504 -1 217 315 9 46 chr3 41781452 41781560 -176255598 - MIR SINE MIR -10 252 149 25 83 0 0 chr3 41782525 41782585 -176254573 + AT_rich Low_complexity Low_complexity 1 60 0 288 0 0 0 chr3 41783204 41783236 -176253922 + (CA)n Simple_repeat Simple_repeat 2 33 0 22 35 0 0 chr3 41783274 41783303 -176253855 + AT_rich Low_complexity Low_complexity 1 29 0 191 255 85 0 chr3 41784827 41784874 -176252284 + L2 LINE L2 3262 3312 -1 181 333 48 16 chr3 41785506 41785632 -176251526 - L2 LINE L2 -3 3310 3181 647 301 143 49 chr3 41785706 41785967 -176251191 + MLT1L LTR MaLR 1 236 -379 2222 110 3 7 chr3 41785967 41786277 -176250881 - AluSc SINE Alu 0 309 1 647 301 143 49 chr3 41786277 41786495 -176250663 + MLT1L LTR MaLR 236 432 -183 234 0 0 0 chr3 41786495 41786521 -176250637 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1507 193 44 4 chr3 41786524 41786794 -176250364 - AluJb SINE Alu -29 283 3 647 301 143 49 chr3 41786794 41786863 -176250295 + MLT1L LTR MaLR 433 606 -9 1124 156 138 45 chr3 41788173 41788462 -176248696 + L1ME1 LINE L1 5739 6054 -112 1351 145 18 23 chr3 41788462 41788683 -176248475 - MER46A DNA MER2_type 0 236 17 356 183 26 0 chr3 41788738 41788824 -176248334 + L1ME1 LINE L1 6089 6184 0 269 227 28 14 chr3 41788975 41789079 -176248079 - LTR33A LTR ERVL -25 498 425 2138 112 3 14 chr3 41789088 41789382 -176247776 - AluSg SINE Alu -19 291 1 2147 99 16 35 chr3 41789725 41790039 -176247119 + AluSc SINE Alu 1 308 -1 2375 95 0 0 chr3 41791145 41791451 -176245707 - AluSg SINE Alu -4 306 1 842 168 8 0 chr3 41791477 41791608 -176245550 + FRAM SINE Alu 1 129 -47 973 204 114 29 chr3 41792012 41792320 -176244838 - L1M4 LINE L1 -1112 5270 4937 302 147 0 59 chr3 41792377 41792445 -176244713 + L1ME3 LINE L1 5220 5283 -863 259 254 153 34 chr3 41792540 41792717 -176244441 + L1ME3 LINE L1 5498 5695 -475 242 256 76 87 chr3 41792894 41793066 -176244092 + L1ME3 LINE L1 5965 6134 -28 22 0 0 0 chr3 41795434 41795456 -176241702 + AT_rich Low_complexity Low_complexity 1 22 0 338 222 0 0 chr3 41795461 41795524 -176241634 - MER5A DNA MER1_type -83 106 44 847 214 34 6 chr3 41795557 41795735 -176241423 - MER5A DNA MER1_type 0 189 7 1078 149 47 28 chr3 41795926 41796140 -176241018 + L1MA2 LINE L1 6087 6304 0 1074 207 55 12 chr3 41797604 41797860 -176239298 + L1MC4 LINE L1 7765 8031 -11 388 274 77 0 chr3 41798012 41798129 -176239029 + MIR SINE MIR 46 171 -91 2197 92 3 3 chr3 41798780 41799064 -176238094 + AluSp SINE Alu 15 298 -15 1124 43 0 7 chr3 41799065 41799205 -176237953 + L1PA4 LINE L1 5865 6003 -152 3295 225 113 21 chr3 41801166 41802469 -176234689 - L1M4 LINE L1 -2406 3976 2325 1998 147 7 3 chr3 41802469 41802768 -176234390 + AluSx SINE Alu 1 300 -12 3295 225 113 21 chr3 41802768 41802987 -176234171 - L1M4 LINE L1 -4057 2325 2128 1984 175 34 102 chr3 41802991 41803529 -176233629 - L1M4 LINE L1 -4559 1825 1325 1466 167 69 4 chr3 41803682 41803957 -176233201 + AluSx SINE Alu 1 293 -19 201 39 0 0 chr3 41804112 41804138 -176233020 + (A)n Simple_repeat Simple_repeat 1 26 0 948 161 0 0 chr3 41805385 41805528 -176231630 + AluSg/x SINE Alu 130 272 -38 726 106 120 148 chr3 41805544 41805692 -176231466 - Tigger2 DNA MER2_type -2507 211 69 2104 108 3 0 chr3 41805692 41805979 -176231179 - AluSx SINE Alu -24 288 1 726 106 120 148 chr3 41805979 41806047 -176231111 - Tigger2 DNA MER2_type -2649 69 1 667 134 17 17 chr3 41806239 41806358 -176230800 + L1MB2 LINE L1 6042 6160 -11 554 172 6 0 chr3 42006519 42006626 -176030532 + L1M4 LINE L1 2357 2506 -3941 229 204 0 0 chr3 42006800 42006844 -176030314 + AluJ/monomer SINE Alu 1 44 -256 262 308 47 35 chr3 42006981 42007150 -176030008 + MARNA DNA Mariner 254 424 -162 875 167 0 0 chr3 42007306 42007438 -176029720 + FLAM_C SINE Alu 1 132 -1 668 276 83 48 chr3 42008147 42008509 -176028649 - HAL1 LINE L1 -359 2148 1800 1906 139 41 3 chr3 42008509 42008803 -176028355 - AluSx SINE Alu -7 305 1 668 276 83 48 chr3 42008803 42008891 -176028267 - HAL1 LINE L1 -707 1800 1677 1734 187 17 0 chr3 42008891 42009190 -176027968 + AluJb SINE Alu 1 304 -8 668 276 83 48 chr3 42009190 42009220 -176027938 - HAL1 LINE L1 -830 1677 1650 1886 223 94 22 chr3 42009233 42009816 -176027342 + L1M4 LINE L1 2890 3514 -2868 270 211 39 0 chr3 42009816 42009868 -176027290 + AluSg/x SINE Alu 117 170 -132 1379 193 64 24 chr3 42009870 42010166 -176026992 + AluJo SINE Alu 3 310 -2 2242 115 7 0 chr3 42010331 42010636 -176026522 + AluY SINE Alu 1 307 -4 2203 197 33 42 chr3 42010725 42010850 -176026308 + L1M4 LINE L1 3616 3741 -2641 1927 154 43 0 chr3 42010850 42011149 -176026009 + AluJb SINE Alu 1 312 0 2203 197 33 42 chr3 42011149 42011439 -176025719 + L1M4 LINE L1 3741 4027 -2355 2069 146 27 43 chr3 42011439 42011809 -176025349 - THE1B LTR MaLR 0 364 1 2203 197 33 42 chr3 42011809 42011936 -176025222 + L1M4 LINE L1 4027 4154 -2228 524 224 61 14 chr3 42011935 42012082 -176025076 + L1M4 LINE L1 5265 5418 -964 * 303 226 48 0 chr3 42012226 42012310 -176024848 + HAL1 LINE L1 2237 2324 -183 1856 143 56 0 chr3 42013007 42013293 -176023865 - AluSx SINE Alu -10 302 1 253 213 53 27 chr3 42013384 42013459 -176023699 - L1ME LINE L1 -311 5810 5734 200 211 0 0 chr3 42014739 42014777 -176022381 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 226 189 38 0 chr3 42015257 42015310 -176021848 + MER116 DNA Mariner 26 80 0 2104 133 0 0 chr3 42015545 42015839 -176021319 - AluSx SINE Alu -18 294 1 214 223 25 50 chr3 42016225 42016346 -176020812 + (TTATA)n Simple_repeat Simple_repeat 2 119 0 30 43 0 43 chr3 42016400 42016470 -176020688 + AT_rich Low_complexity Low_complexity 1 67 0 235 191 48 12 chr3 42016558 42016642 -176020516 + (TA)n Simple_repeat Simple_repeat 1 87 0 2030 126 0 0 chr3 42016749 42017026 -176020132 - AluSx SINE Alu -35 277 1 686 86 86 9 chr3 42017069 42017185 -176019973 - L1MA8 LINE L1 -52 6239 6115 1208 206 54 7 chr3 42017204 42017480 -176019678 - L1MA9 LINE L1 -35 6277 5989 498 16 0 16 chr3 42017477 42017539 -176019619 - L1MA8 LINE L1 -160 6131 6071 * 5294 112 23 0 chr3 42017934 42018836 -176018322 + L1PA12 LINE L1 5117 6033 -135 2211 116 7 0 chr3 42019660 42019963 -176017195 + AluSx SINE Alu 1 305 -7 346 325 34 10 chr3 42020424 42020573 -176016585 - MER20B DNA MER1_type 0 219 63 603 207 27 9 chr3 42021274 42021385 -176015773 - FRAM SINE Alu -66 110 1 21 57 0 0 chr3 42021458 42021493 -176015665 + AT_rich Low_complexity Low_complexity 1 35 0 1349 190 63 114 chr3 42021670 42022160 -176014998 + MER4C LTR ERV1 1 465 0 1798 139 4 0 chr3 42022483 42022787 -176014371 + AluSx SINE Alu 26 330 0 467 163 0 23 chr3 42022787 42022873 -176014285 + L1M1 LINE L1 2844 2927 -4638 6452 91 24 79 chr3 42022878 42024282 -176012876 - SVA Other Other -555 1386 431 300 317 119 20 chr3 42024757 42024959 -176012199 - MER57A LTR ERV1 -175 228 7 1624 167 21 14 chr3 42025016 42025298 -176011860 - AluSx SINE Alu -28 284 1 2478 69 0 0 chr3 42025302 42025605 -176011553 - AluY SINE Alu -8 303 1 253 119 0 0 chr3 42025618 42025660 -176011498 - MER65B LTR ERV1 -487 44 3 2435 224 55 24 chr3 42025662 42026278 -176010880 - MER65B-int LTR ERV1 0 4871 4237 415 178 10 59 chr3 42026278 42026379 -176010779 - MER65B-int LTR ERV1 -739 4132 4037 21 0 0 0 chr3 42026666 42026687 -176010471 + GC_rich Low_complexity Low_complexity 1 21 0 282 191 170 11 chr3 42027452 42027546 -176009612 + MER103 DNA DNA 57 165 -1 1031 184 237 15 chr3 42029147 42029392 -176007766 + L1MEc LINE L1 1841 2030 -4366 2119 137 0 9 chr3 42029392 42029707 -176007451 + AluSx SINE Alu 1 312 0 1031 184 237 15 chr3 42029707 42029858 -176007300 + L1MEc LINE L1 2030 2325 -4071 2211 120 0 0 chr3 42029858 42030158 -176007000 + AluSg SINE Alu 1 300 -10 1236 171 5 5 chr3 42030713 42030923 -176006235 - AluJb SINE Alu -20 292 83 2844 74 3 14 chr3 42031142 42031506 -176005652 - L1PB1 LINE L1 0 6151 5792 913 100 0 105 chr3 42031560 42031789 -176005369 - L1PB1 LINE L1 -359 5792 5588 269 208 13 39 chr3 42032084 42032161 -176004997 + CT-rich Low_complexity Low_complexity 3 77 0 604 324 66 0 chr3 42032662 42032875 -176004283 - MIR SINE MIR -14 248 22 1025 254 35 23 chr3 42032936 42033283 -176003875 + L1ME4a LINE L1 5519 5869 -252 945 182 20 15 chr3 42033692 42033890 -176003268 + L1MB8 LINE L1 5980 6178 0 226 369 70 25 chr3 42034112 42034269 -176002889 + L2 LINE L2 3107 3270 -2 2764 236 38 31 chr3 42034400 42035327 -176001831 + L1M4 LINE L1 2574 3506 -2640 374 268 62 0 chr3 42035330 42035442 -176001716 + AluSq/x SINE Alu 1 119 -184 5130 148 14 124 chr3 42035625 42036180 -176000978 + L1M2 LINE L1 1037 1464 -5385 624 118 0 0 chr3 42036180 42036265 -176000893 + AluY SINE Alu 213 297 -14 5130 148 14 124 chr3 42036265 42036910 -176000248 + L1M2 LINE L1 1464 2179 -4670 1407 176 60 89 chr3 42037044 42037338 -175999820 + MER58B DNA MER1_type 5 289 -2131 860 214 7 0 chr3 42037338 42037492 -175999666 - FRAM SINE Alu -11 155 1 1407 176 60 89 chr3 42037492 42037544 -175999614 + MER58B DNA MER1_type 289 341 0 211 384 29 43 chr3 42037559 42037697 -175999461 - MIR3 SINE MIR -72 136 1 569 288 47 41 chr3 42038932 42039276 -175997882 - L1M4 LINE L1 -2190 3956 3611 1205 272 91 35 chr3 42039288 42039748 -175997410 - MLT1J LTR MaLR -22 489 4 249 179 90 51 chr3 42039774 42039852 -175997306 - MIR SINE MIR -153 109 29 1076 196 10 5 chr3 42040358 42040557 -175996601 + AluJo SINE Alu 89 288 -24 701 172 75 0 chr3 42040681 42040815 -175996343 - MER5A DNA MER1_type -44 145 2 206 354 6 31 chr3 42041170 42041331 -175995827 + CT-rich Low_complexity Low_complexity 3 159 0 191 288 144 30 chr3 42041596 42041728 -175995430 + L2 LINE L2 3165 3311 -2 810 240 15 10 chr3 42042233 42042429 -175994729 + MIR SINE MIR 60 256 -6 304 77 39 0 chr3 42042900 42042952 -175994206 + CT-rich Low_complexity Low_complexity 4 57 0 1654 192 3 19 chr3 42042954 42043271 -175993887 - AluJb SINE Alu 0 312 1 240 388 0 0 chr3 42043271 42043351 -175993807 + L2 LINE L2 2590 2669 -645 391 237 82 0 chr3 42043376 42043473 -175993685 + MIR SINE MIR 13 117 -145 234 311 107 51 chr3 42043561 42043738 -175993420 + L2 LINE L2 2842 3028 -244 264 314 48 24 chr3 42043771 42043895 -175993263 - MER91A DNA MER1_type -25 171 45 195 42 0 0 chr3 42045012 42045036 -175992122 + (CTCA)n Simple_repeat Simple_repeat 4 27 0 969 156 17 22 chr3 42046072 42046251 -175990907 - AluSg/x SINE Alu -14 298 121 239 229 7 91 chr3 42046251 42046454 -175990704 - AluJb SINE Alu -83 219 121 24 0 0 0 chr3 42046569 42046593 -175990565 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr3 42047565 42047593 -175989565 + AT_rich Low_complexity Low_complexity 1 28 0 1201 90 6 6 chr3 42047909 42048065 -175989093 + L1PA12 LINE L1 5995 6150 -18 1907 95 0 0 chr3 42048092 42048344 -175988814 - L1P4 LINE L1 -362 5812 5561 1889 134 4 4 chr3 42048347 42048622 -175988536 + AluSx SINE Alu 17 291 -21 506 335 86 34 chr3 42049157 42049482 -175987676 + L2 LINE L2 2475 2816 -498 407 282 129 18 chr3 42049486 42049656 -175987502 - MIR SINE MIR -67 195 7 443 306 48 121 chr3 42049662 42050116 -175987042 + L2 LINE L2 2851 3271 -1 365 219 113 42 chr3 42051890 42052040 -175985118 - MIR SINE MIR -60 202 44 698 198 24 8 chr3 42053770 42053896 -175983262 + MER2 DNA MER2_type 218 345 0 343 248 120 0 chr3 42053896 42054013 -175983145 - L1ME4a LINE L1 -24 6097 5967 748 118 92 33 chr3 42054040 42054192 -175982966 + L1PA5 LINE L1 5994 6154 0 218 250 18 18 chr3 42054646 42054702 -175982456 + L3 LINE CR1 1520 1575 -2 4771 124 12 12 chr3 42055055 42055794 -175981364 - L1MA3 LINE L1 -284 6021 5283 289 232 49 0 chr3 42056765 42056847 -175980311 + MLT1K LTR MaLR 148 233 -355 263 295 248 0 chr3 42056910 42057015 -175980143 - L2 LINE L2 0 3272 3142 556 178 28 9 chr3 42057617 42057724 -175979434 + AluSg/x SINE Alu 164 272 -40 281 24 49 0 chr3 42057735 42057776 -175979382 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 863 209 14 33 chr3 42058675 42058890 -175978268 + L1MA5A LINE L1 4791 5001 -1145 3112 113 10 48 chr3 42058897 42058976 -175978182 - L1PA16 LINE L1 -162 6004 5924 1943 106 85 21 chr3 42058976 42059258 -175977900 - AluSx SINE Alu -8 304 5 3112 113 10 48 chr3 42059258 42059682 -175977476 - L1PA16 LINE L1 -242 5924 5520 5068 120 12 25 chr3 42059682 42060457 -175976701 + L1MA5A LINE L1 5519 6283 -14 929 179 4 16 chr3 42060457 42060686 -175976472 - AluJb SINE Alu -17 295 3 606 164 46 59 chr3 42060723 42060875 -175976283 - MER65A-int LTR ERV1 -3225 3373 3224 * 4090 190 108 46 chr3 42060863 42061367 -175975791 - MER65A-int LTR ERV1 -3544 1327 855 2133 140 0 10 chr3 42061367 42061667 -175975491 + AluSq SINE Alu 3 301 -12 273 29 0 0 chr3 42061667 42061701 -175975457 + (TA)n Simple_repeat Simple_repeat 2 35 0 2133 140 0 10 chr3 42061701 42061714 -175975444 + AluSq SINE Alu 301 313 0 4090 190 108 46 chr3 42061714 42062352 -175974806 - MER65A-int LTR ERV1 -4016 855 115 2407 123 90 43 chr3 42062440 42062576 -175974582 - MER65A LTR ERV1 -2 443 315 2039 116 3 53 chr3 42062576 42062895 -175974263 - AluSx SINE Alu -9 303 1 2407 123 90 43 chr3 42062895 42063181 -175973977 - MER65A LTR ERV1 -130 315 1 411 134 62 103 chr3 42063182 42063279 -175973879 - L1MB7 LINE L1 -273 5911 5819 3217 70 6 70 chr3 42063279 42063752 -175973406 - L1PA6 LINE L1 -5 6149 5707 755 165 12 75 chr3 42063785 42063902 -175973256 - L1MB7 LINE L1 -447 5715 5618 2149 88 0 59 chr3 42063902 42064207 -175972951 - AluSc SINE Alu -22 287 1 755 165 12 75 chr3 42064207 42064269 -175972889 - L1MB7 LINE L1 -544 5618 5554 1515 193 115 46 chr3 42064377 42064750 -175972408 - MLT1D LTR MaLR -106 399 1 598 315 45 25 chr3 42064750 42064858 -175972300 + L2 LINE L2 2998 3102 -211 2471 78 0 7 chr3 42064858 42065167 -175971991 + AluSq SINE Alu 1 307 -6 598 315 45 25 chr3 42065167 42065344 -175971814 + L2 LINE L2 3102 3289 -24 413 285 73 55 chr3 42065706 42065871 -175971287 - MER5A DNA MER1_type -1 188 21 2524 106 39 28 chr3 42066216 42066576 -175970582 - THE1B LTR MaLR 0 364 1 2467 85 0 0 chr3 42067023 42067328 -175969830 - AluSx SINE Alu -7 305 1 1997 136 0 19 chr3 42067331 42067641 -175969517 - AluSx SINE Alu -8 304 1 453 262 286 16 chr3 42067641 42068015 -175969143 - HAL1 LINE L1 -225 2282 1808 527 299 50 70 chr3 42068486 42068727 -175968431 + MIR SINE MIR 1 236 -26 2349 70 31 0 chr3 42068844 42069131 -175968027 - AluSx SINE Alu -12 300 5 270 333 11 0 chr3 42069180 42069267 -175967891 - L2 LINE L2 -4 3309 3222 2584 156 8 34 chr3 42069287 42069598 -175967560 + L1MB2 LINE L1 5707 6003 -168 2284 108 0 0 chr3 42069598 42069895 -175967263 - AluSg SINE Alu -13 297 1 2584 156 8 34 chr3 42069895 42070059 -175967099 + L1MB2 LINE L1 6003 6170 -1 384 336 123 5 chr3 42070225 42070436 -175966722 - MIR SINE MIR -23 239 4 853 113 49 21 chr3 42070901 42071043 -175966115 - FRAM SINE Alu -11 165 20 1985 148 0 3 chr3 42071050 42071347 -175965811 - AluSx SINE Alu -16 296 1 1014 175 27 0 chr3 42071444 42071627 -175965531 - L1MB3 LINE L1 -34 6149 5962 617 144 0 0 chr3 42071627 42071717 -175965441 - 5S rRNA rRNA -31 90 1 368 187 0 13 chr3 42071717 42071792 -175965366 - L1MB3 LINE L1 -197 5974 5901 1342 182 10 76 chr3 42072172 42072474 -175964684 + AluJo SINE Alu 1 282 -30 1316 206 0 0 chr3 42072561 42072780 -175964378 - MER20 DNA MER1_type 0 219 1 191 261 65 0 chr3 42073211 42073257 -175963901 + L2 LINE L2 3223 3271 -1 875 162 0 22 chr3 42073661 42073797 -175963361 - FLAM_A SINE Alu 0 133 1 2184 107 21 0 chr3 42074541 42074831 -175962327 + AluSx SINE Alu 1 296 -16 1538 237 79 8 chr3 42074840 42075195 -175961963 - MER61C-int LTR ERV1 -887 3984 3605 357 200 371 16 chr3 42075183 42075343 -175961815 - MER61C-int LTR ERV1 -847 4089 3363 * 2786 200 66 113 chr3 42075344 42075452 -175961706 - MER61C-int LTR ERV1 -1114 4022 3911 1805 152 0 42 chr3 42075452 42075762 -175961396 + AluJb SINE Alu 3 299 -13 2786 200 66 113 chr3 42075762 42075832 -175961326 - MER61C-int LTR ERV1 -1225 3911 3839 2136 140 0 0 chr3 42075832 42076139 -175961019 + AluSx SINE Alu 1 307 -5 2786 200 66 113 chr3 42076139 42076233 -175960925 - MER61C-int LTR ERV1 -1297 3839 3742 1629 190 0 31 chr3 42076233 42076554 -175960604 + AluJo SINE Alu 1 311 -1 2786 200 66 113 chr3 42076554 42077811 -175959347 - MER61C-int LTR ERV1 -1394 3742 2492 774 157 25 69 chr3 42077889 42078093 -175959065 - MER61C-int LTR ERV1 -2868 3730 3536 262 184 0 0 chr3 42078168 42078217 -175958941 - MER61C-int LTR ERV1 -4281 2477 2429 2328 87 7 0 chr3 42078442 42078741 -175958417 + AluSg SINE Alu 1 301 -9 2432 64 3 13 chr3 42078741 42079053 -175958105 + AluY SINE Alu 1 309 -2 1858 144 3 10 chr3 42079117 42079408 -175957750 + AluSg SINE Alu 5 293 -17 998 162 0 115 chr3 42079447 42079508 -175957650 + AluJo SINE Alu 87 153 -159 2262 107 0 10 chr3 42079508 42079818 -175957340 + AluSg1 SINE Alu 1 307 -2 998 162 0 115 chr3 42079818 42079991 -175957167 + AluJo SINE Alu 153 294 -18 618 108 25 33 chr3 42079991 42080111 -175957047 + L1 LINE L1 4538 4656 -1490 2252 114 0 0 chr3 42080111 42080409 -175956749 + AluSc SINE Alu 1 298 -11 1012 202 5 28 chr3 42080410 42080628 -175956530 + L1 LINE L1 4789 5001 -1145 383 203 0 0 chr3 42080635 42080704 -175956454 - L1PA16 LINE L1 -162 6004 5936 307 278 156 0 chr3 42081137 42081227 -175955931 - L2 LINE L2 -2 3311 3208 571 330 112 4 chr3 42081422 42081655 -175955503 - L2 LINE L2 -225 3088 2831 2370 64 3 7 chr3 42081667 42081962 -175955196 - AluY SINE Alu -17 294 1 866 246 138 40 chr3 42081992 42082370 -175954788 - MER50 LTR ERV1 -298 436 22 2035 183 57 5 chr3 42082376 42082759 -175954399 - MER61C LTR ERV1 0 434 32 11293 173 53 46 chr3 42082760 42083865 -175953293 - MER61C-int LTR ERV1 -917 5029 3933 2226 113 13 0 chr3 42083865 42084166 -175952992 - AluSg SINE Alu -5 305 1 2193 123 0 0 chr3 42084171 42084472 -175952686 - AluSx SINE Alu -9 303 3 11293 173 53 46 chr3 42084472 42085496 -175951662 - MER61C-int LTR ERV1 -2016 3930 2915 2400 53 0 7 chr3 42085496 42085810 -175951348 - AluY SINE Alu 0 312 1 11293 173 53 46 chr3 42085810 42085822 -175951336 - MER61C-int LTR ERV1 -3031 2915 2905 2369 103 0 3 chr3 42085822 42086134 -175951024 - AluY SINE Alu 0 311 1 11293 173 53 46 chr3 42086134 42086169 -175950989 - MER61C-int LTR ERV1 -3041 2905 2872 2262 129 0 0 chr3 42086169 42086479 -175950679 - AluSq SINE Alu -3 310 1 11293 173 53 46 chr3 42086479 42087000 -175950158 - MER61C-int LTR ERV1 -3074 2872 1407 2800 110 15 7 chr3 42087013 42087423 -175949735 + MER4E LTR ERV1 1 413 -366 1869 127 6 62 chr3 42087431 42087555 -175949603 - AluSq SINE Alu -7 306 177 1368 153 103 121 chr3 42087555 42088011 -175949147 - LTR7 LTR ERV1 -2 448 1 1869 127 6 62 chr3 42088011 42088210 -175948948 - AluSq SINE Alu -136 177 1 2199 92 3 10 chr3 42088252 42088547 -175948611 - AluSx SINE Alu -8 304 12 2471 95 9 3 chr3 42088547 42088885 -175948273 + MER4E LTR ERV1 427 766 0 2222 152 0 0 chr3 42088896 42089232 -175947926 - MER61C-int LTR ERV1 -4984 2553 2218 * 4810 165 31 32 chr3 42089209 42090476 -175946682 - MER61C-int LTR ERV1 -382 4835 3567 425 197 0 0 chr3 42090476 42090552 -175946606 - MADE1 DNA Mariner 0 80 5 4810 165 31 32 chr3 42090552 42090689 -175946469 - MER61C-int LTR ERV1 -1650 3567 3431 1992 154 0 10 chr3 42090689 42090982 -175946176 - AluSx SINE Alu -22 290 1 4810 165 31 32 chr3 42090982 42091148 -175946010 - MER61C-int LTR ERV1 -1786 3431 183 288 232 134 0 chr3 42091183 42091265 -175945893 - MER61C-int LTR ERV1 -6593 498 406 * 508 257 16 21 chr3 42091257 42091417 -175945741 - MER61C-int LTR ERV1 -6837 254 18 2187 163 24 29 chr3 42091433 42091562 -175945596 - MER61C LTR ERV1 0 434 306 2170 107 7 0 chr3 42091562 42091852 -175945306 + AluSp SINE Alu 1 292 -21 2187 163 24 29 chr3 42091852 42092174 -175944984 - MER61C LTR ERV1 -128 306 1 1827 203 65 3 chr3 42092188 42092557 -175944601 + LTR39 LTR ERV1 392 783 0 1471 247 14 3 chr3 42092561 42092857 -175944301 - MER57A-int LTR ERV1 -7238 299 1 2050 196 66 0 chr3 42092857 42093235 -175943923 - MER57A LTR ERV1 0 403 1 2051 101 3 14 chr3 42093251 42093573 -175943585 - AluSx SINE Alu 0 319 1 272 293 111 95 chr3 42093588 42093867 -175943291 + HAL1 LINE L1 1275 1548 -959 2113 134 7 3 chr3 42093867 42094172 -175942986 - AluSx SINE Alu -6 306 1 1655 177 10 33 chr3 42094179 42094478 -175942680 - AluJo SINE Alu -20 292 1 272 293 111 95 chr3 42094478 42094579 -175942579 + HAL1 LINE L1 1553 1669 -838 381 213 75 44 chr3 42094877 42095101 -175942057 - L1MB7 LINE L1 -16 6168 5909 980 74 40 124 chr3 42095101 42095244 -175941914 - MER65A LTR ERV1 0 445 322 2302 83 3 0 chr3 42095244 42095534 -175941624 + AluSq SINE Alu 2 292 -21 980 74 40 124 chr3 42095534 42095592 -175941566 - MER65A LTR ERV1 -123 322 261 1420 241 164 25 chr3 42095750 42096618 -175940540 + L2 LINE L2 2247 3298 -15 215 262 49 0 chr3 42096622 42096683 -175940475 + MIR SINE MIR 195 258 -4 316 286 44 24 chr3 42097961 42098098 -175939060 + MIR SINE MIR 30 167 -62 1499 175 20 44 chr3 42098174 42098471 -175938687 - AluJo SINE Alu -22 290 1 2116 106 10 14 chr3 42098736 42099028 -175938130 + AluSx SINE Alu 1 291 -21 235 283 62 18 chr3 42099038 42099151 -175938007 - L1ME LINE L1 -457 5664 5547 31 44 0 0 chr3 42099241 42099286 -175937872 + AT_rich Low_complexity Low_complexity 1 45 0 523 237 37 7 chr3 42099764 42099899 -175937259 - L1MC4 LINE L1 -139 7903 7765 731 239 12 12 chr3 42099901 42100068 -175937090 + FAM SINE Alu 1 48 -1 330 202 48 29 chr3 42100086 42100190 -175936968 - L1MC4 LINE L1 -243 7799 7694 5014 158 20 24 chr3 42100196 42100948 -175936210 - L1MB3 LINE L1 0 6183 5437 2281 113 3 0 chr3 42100948 42101257 -175935901 - AluSp SINE Alu -3 310 1 5014 158 20 24 chr3 42101257 42101590 -175935568 - L1MB3 LINE L1 -746 5437 5104 1820 183 23 13 chr3 42101590 42101984 -175935174 - L1MB3 LINE L1 -1323 4823 4426 3096 163 49 33 chr3 42101994 42102252 -175934906 + Tigger3b DNA MER2_type 1 253 -2775 1540 207 18 4 chr3 42102252 42102559 -175934599 - AluJo SINE Alu 0 311 1 3096 163 49 33 chr3 42102559 42102739 -175934419 + Tigger3b DNA MER2_type 253 429 -2599 2767 22 10 0 chr3 42102739 42103051 -175934107 - AluYb8 SINE Alu -3 315 1 3096 163 49 33 chr3 42103051 42103218 -175933940 + Tigger3b DNA MER2_type 429 618 -613 11849 176 11 44 chr3 42103227 42103961 -175933197 - L1P LINE L1 -1303 4843 4086 2179 139 0 0 chr3 42103961 42104271 -175932887 - AluSx SINE Alu -2 310 1 11849 176 11 44 chr3 42104271 42104756 -175932402 - L1P LINE L1 -2060 4086 3587 1983 119 7 17 chr3 42104756 42105050 -175932108 - AluSx SINE Alu 0 312 22 11849 176 11 44 chr3 42105050 42106354 -175930804 - L1P LINE L1 -2559 3587 2402 243 0 0 0 chr3 42106598 42106625 -175930533 + (A)n Simple_repeat Simple_repeat 1 27 0 2762 216 28 94 chr3 42106666 42106863 -175930295 + MER57A-int LTR ERV1 6127 6335 -1202 2102 130 0 3 chr3 42106863 42107155 -175930003 + AluSc SINE Alu 1 291 -18 2762 216 28 94 chr3 42107155 42107374 -175929784 + MER57A-int LTR ERV1 6335 6567 -970 1984 116 12 50 chr3 42107374 42107694 -175929464 + AluSg SINE Alu 1 308 -2 2762 216 28 94 chr3 42107694 42107706 -175929452 + MER57A-int LTR ERV1 6567 6578 -959 2310 86 0 23 chr3 42107706 42108008 -175929150 + AluSq SINE Alu 1 295 -18 2421 87 0 3 chr3 42108008 42108320 -175928838 + AluY SINE Alu 1 311 0 2762 216 28 94 chr3 42108320 42108781 -175928377 + MER57A-int LTR ERV1 6576 6960 -577 1012 181 17 73 chr3 42108794 42109026 -175928132 + MER57A-int LTR ERV1 7318 7536 -1 2145 146 92 5 chr3 42109028 42109399 -175927759 + MER57A LTR ERV1 1 403 0 1480 160 20 50 chr3 42109463 42109632 -175927526 - AluJo SINE Alu -21 291 133 2340 87 0 0 chr3 42109632 42109921 -175927237 + AluY SINE Alu 1 289 -22 1480 160 20 50 chr3 42109921 42110051 -175927107 - AluJo SINE Alu -179 133 1 1536 182 9 46 chr3 42110096 42110420 -175926738 - AluJo SINE Alu 0 312 1 221 302 17 60 chr3 42110756 42110872 -175926286 + MIR SINE MIR 36 146 -62 1354 98 31 5 chr3 42110975 42111169 -175925989 - AluSx SINE Alu -100 212 14 352 276 82 112 chr3 42112236 42112990 -175924168 - L1M2 LINE L1 -5599 1250 509 233 227 27 13 chr3 42113715 42113790 -175923368 - L1MB8 LINE L1 0 6178 6103 636 158 126 24 chr3 42115306 42115433 -175921725 + FAM SINE Alu 20 159 -26 200 200 0 71 chr3 42115545 42115630 -175921528 + T-rich Low_complexity Low_complexity 4 82 0 187 250 0 133 chr3 42115733 42115853 -175921305 - MIR3 SINE MIR -13 195 92 24 53 0 0 chr3 42116140 42116178 -175920980 + AT_rich Low_complexity Low_complexity 1 38 0 799 183 108 9 chr3 42116357 42116570 -175920588 + L1MA8 LINE L1 6056 6289 -2 1301 171 171 49 chr3 42116753 42117057 -175920101 + MER47B DNA MER2_type 1 341 -77 1023 193 10 34 chr3 42117061 42117268 -175919890 - AluJo SINE Alu -27 285 84 312 203 108 0 chr3 42117268 42117342 -175919816 + MER47B DNA MER2_type 337 418 0 674 190 154 72 chr3 42117607 42117721 -175919437 - MER58C DNA MER1_type -2209 211 108 2285 93 0 7 chr3 42117721 42118022 -175919136 + AluSc SINE Alu 4 302 -7 674 190 154 72 chr3 42118022 42118102 -175919056 - MER58C DNA MER1_type -2312 108 1 2129 95 41 3 chr3 42118120 42118415 -175918743 + AluSx SINE Alu 3 308 -4 889 221 0 0 chr3 42118775 42118938 -175918220 - FAM SINE Alu -12 163 1 2220 95 0 10 chr3 42119040 42119334 -175917824 - AluY SINE Alu -20 291 1 2310 86 0 23 chr3 42119334 42119636 -175917522 - AluSq SINE Alu -18 295 1 1978 115 12 53 chr3 42119648 42119969 -175917189 - AluSg SINE Alu -2 308 1 854 198 50 25 chr3 42119969 42120171 -175916987 - MER57-int LTR ERV1 -997 6540 6334 2162 116 0 3 chr3 42120188 42120480 -175916678 - AluSc SINE Alu -18 291 1 189 0 0 0 chr3 42120587 42120608 -175916550 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1204 151 41 0 chr3 42121825 42122043 -175915115 + L1MA8 LINE L1 6059 6285 -6 22 35 0 0 chr3 42122044 42122073 -175915085 + AT_rich Low_complexity Low_complexity 1 29 0 1718 159 20 30 chr3 42122193 42122495 -175914663 - AluJb SINE Alu -13 299 1 2263 113 0 3 chr3 42123253 42123563 -175913595 - AluSx SINE Alu -3 309 1 23 33 0 0 chr3 42123607 42123637 -175913521 + AT_rich Low_complexity Low_complexity 1 30 0 2180 120 0 0 chr3 42123797 42124097 -175913061 - AluSg SINE Alu -9 301 2 399 246 136 88 chr3 42124164 42124620 -175912538 - L1MEd LINE L1 -4862 1257 780 267 263 21 11 chr3 42124624 42124719 -175912439 - LTR33A LTR ERVL -7 516 421 1840 134 71 0 chr3 42125925 42126208 -175910950 + AluJb SINE Alu 1 303 -9 292 214 177 102 chr3 42126641 42126856 -175910302 - L2 LINE L2 -410 2904 2674 2064 118 34 0 chr3 42127347 42127644 -175909514 - AluSx SINE Alu -5 307 1 2984 159 75 38 chr3 42128203 42128289 -175908869 + L1MB7 LINE L1 5524 5605 -579 1924 157 10 0 chr3 42128289 42128589 -175908569 + AluSx SINE Alu 1 303 -9 2984 159 75 38 chr3 42128589 42129131 -175908027 + L1MB7 LINE L1 5605 6175 -9 387 0 0 0 chr3 42129514 42129557 -175907601 + (TA)n Simple_repeat Simple_repeat 1 43 0 2204 103 7 3 chr3 42130498 42130790 -175906368 - AluSx SINE Alu -19 293 1 368 292 11 59 chr3 42131418 42131621 -175905537 + L1ME4a LINE L1 5674 5868 -253 337 226 212 14 chr3 42131695 42131841 -175905317 - MIR SINE MIR -1 261 87 334 224 230 13 chr3 42131869 42132021 -175905137 - L1ME3 LINE L1 -1 6161 5977 2261 82 7 33 chr3 42132215 42132521 -175904637 + AluSc SINE Alu 1 298 -11 196 325 38 0 chr3 42132523 42132603 -175904555 - L2 LINE L2 -779 2535 2453 * 441 315 95 42 chr3 42132602 42132961 -175904197 - L2 LINE L2 0 3313 2936 2247 153 25 3 chr3 42133459 42133826 -175903332 - L1PA12 LINE L1 -7200 381 7 2705 158 76 54 chr3 42133833 42134474 -175902684 - L1M4 LINE L1 -3105 3277 2651 1598 181 3 32 chr3 42134474 42134784 -175902374 - AluJb SINE Alu -11 301 1 2705 158 76 54 chr3 42134784 42136041 -175901117 - L1M4 LINE L1 -3731 2651 1423 2223 73 0 21 chr3 42136041 42136356 -175900802 - AluY SINE Alu 0 309 1 2705 158 76 54 chr3 42136356 42137461 -175899697 - L1M4 LINE L1 -4959 1423 18 1542 251 133 24 chr3 42137480 42138280 -175898878 - L1MC4a LINE L1 -220 7588 6586 396 0 0 0 chr3 42138280 42138324 -175898834 + (TG)n Simple_repeat Simple_repeat 2 45 0 1542 251 133 24 chr3 42138324 42138488 -175898670 - L1MC4a LINE L1 -1222 6586 6441 2068 118 28 0 chr3 42138839 42139127 -175898031 + AluSx SINE Alu 1 296 -16 321 289 70 9 chr3 42140063 42140177 -175896981 - MIR SINE MIR -77 185 65 351 262 111 29 chr3 42140983 42141196 -175895962 + L1MC5 LINE L1 7029 7249 -737 1678 159 54 4 chr3 42141199 42141475 -175895683 + AluJb SINE Alu 3 292 -20 484 244 72 17 chr3 42141588 42141768 -175895390 + L1MC5 LINE L1 7714 7903 -58 279 0 0 0 chr3 42142442 42142473 -175894685 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1909 119 4 0 chr3 42142499 42142759 -175894399 - AluSx SINE Alu -51 261 1 1344 152 5 5 chr3 42143486 42143696 -175893462 - AluJb SINE Alu -20 292 83 2941 81 3 3 chr3 42143915 42144286 -175892872 - L1PB1 LINE L1 0 6151 5781 1443 93 5 5 chr3 42144321 42144526 -175892632 - L1PB1 LINE L1 -359 5792 5588 652 224 39 11 chr3 42144635 42144814 -175892344 + L1M4 LINE L1 4992 5175 -971 2115 139 3 0 chr3 42144858 42145161 -175891997 + AluSx SINE Alu 1 304 -8 1188 148 120 4 chr3 42145175 42145506 -175891652 + L1M4 LINE L1 5164 5528 -646 1878 140 32 0 chr3 42145603 42145888 -175891270 - AluSx SINE Alu -18 294 1 203 0 0 36 chr3 42145891 42145919 -175891239 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 2016 114 3 10 chr3 42146110 42146122 -175891036 - AluSg SINE Alu -15 295 284 204 67 0 0 chr3 42146122 42146152 -175891006 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 2016 114 3 10 chr3 42146152 42146436 -175890722 - AluSg SINE Alu -26 284 1 180 0 0 0 chr3 42146436 42146456 -175890702 + (T)n Simple_repeat Simple_repeat 1 20 0 7873 12 0 0 chr3 42146574 42147466 -175889692 - L1HS LINE L1 0 6155 5265 22 0 0 0 chr3 42147611 42147633 -175889525 + AT_rich Low_complexity Low_complexity 1 22 0 1816 175 0 23 chr3 42147805 42148114 -175889044 + AluJo SINE Alu 1 302 -10 310 274 19 70 chr3 42148138 42148295 -175888863 - L1MC5 LINE L1 -64 7897 7749 2366 122 79 32 chr3 42148755 42149198 -175887960 - L1MB4 LINE L1 -8 6172 5709 252 242 129 0 chr3 42149349 42149481 -175887677 - L1ME4a LINE L1 -190 5931 5783 1645 119 8 4 chr3 42149632 42149867 -175887291 + AluSp SINE Alu 1 236 -77 774 232 30 0 chr3 42150080 42150244 -175886914 + L1MC5 LINE L1 6665 6833 -1128 516 203 107 74 chr3 42150249 42150520 -175886638 + L1MC5 LINE L1 6896 7175 -786 1987 126 7 0 chr3 42150524 42150809 -175886349 + AluSx SINE Alu 7 293 -19 288 129 29 14 chr3 42150809 42150828 -175886330 + (TA)n Simple_repeat Simple_repeat 2 19 -53 1551 147 16 93 chr3 42150828 42151141 -175886017 + AluJb SINE Alu 1 289 -23 288 129 29 14 chr3 42151141 42151191 -175885967 + (TA)n Simple_repeat Simple_repeat 19 72 0 1829 176 0 7 chr3 42151364 42151660 -175885498 + AluJo SINE Alu 2 295 -17 609 278 30 22 chr3 42151678 42151908 -175885250 + L1MC5 LINE L1 7301 7532 -429 2246 100 10 3 chr3 42151910 42152209 -175884949 + AluSq SINE Alu 1 301 -12 1145 201 83 11 chr3 42152222 42152500 -175884658 + L1M4 LINE L1 4696 4993 -1153 478 260 24 53 chr3 42152513 42152682 -175884476 + L1MB3 LINE L1 13 176 -6366 2315 99 0 16 chr3 42152740 42153053 -175884105 - AluSg SINE Alu -2 308 1 801 180 0 7 chr3 42153229 42153368 -175883790 - AluJo SINE Alu -169 143 6 260 366 0 0 chr3 42153391 42153492 -175883666 - L1MC4 LINE L1 -613 7429 7329 245 260 10 67 chr3 42153576 42153680 -175883478 - L1M4c LINE L1 -6286 98 1 * 351 121 0 0 chr3 42153662 42153720 -175883438 - L1M4 LINE L1 -1153 4993 4936 2826 219 89 47 chr3 42153768 42153876 -175883282 + L1MB3 LINE L1 216 318 -6354 396 0 0 0 chr3 42153876 42153920 -175883238 + (TTG)n Simple_repeat Simple_repeat 2 45 0 2826 219 89 47 chr3 42153920 42154197 -175882961 + L1MB3 LINE L1 318 582 -6090 2508 128 0 20 chr3 42154197 42154541 -175882617 + MER1B DNA MER1_type 1 337 0 2826 219 89 47 chr3 42154541 42155420 -175881738 + L1MB3 LINE L1 582 1423 -5249 2051 145 3 0 chr3 42155420 42155731 -175881427 + AluSx SINE Alu 1 312 0 2826 219 89 47 chr3 42155731 42155938 -175881220 + L1MB3 LINE L1 1423 6314 -358 224 281 42 42 chr3 42156005 42156101 -175881057 + L2 LINE L2 3170 3265 -7 1574 138 62 49 chr3 42156522 42156847 -175880311 + L1MA7 LINE L1 5961 6289 -2 21 0 0 0 chr3 42156848 42156869 -175880289 + AT_rich Low_complexity Low_complexity 1 21 0 843 153 0 23 chr3 42158102 42158233 -175878925 + FLAM_C SINE Alu 1 128 -5 1685 166 39 7 chr3 42158824 42159108 -175878050 + AluJb SINE Alu 1 293 -19 316 338 26 26 chr3 42159216 42159370 -175877788 + MIR SINE MIR 1 154 -108 2174 119 53 61 chr3 42159458 42159499 -175877659 - THE1C LTR MaLR 0 375 335 2397 100 0 0 chr3 42159499 42159798 -175877360 + AluY SINE Alu 1 299 -12 2174 119 53 61 chr3 42159798 42160134 -175877024 - THE1C LTR MaLR -40 335 1 2417 82 0 0 chr3 42163348 42163651 -175873507 + AluY SINE Alu 1 303 -8 231 258 82 0 chr3 42163659 42163756 -175873402 - L1ME4a LINE L1 -12 6109 6005 2029 111 28 14 chr3 42163938 42164226 -175872932 - AluSx SINE Alu -20 292 1 875 162 0 22 chr3 42164970 42165106 -175872052 + FLAM_A SINE Alu 1 133 0 191 261 65 0 chr3 42165510 42165556 -175871602 - L2 LINE L2 -1 3271 3223 1316 206 0 0 chr3 42165987 42166206 -175870952 + MER20 DNA MER1_type 1 219 0 1342 182 10 76 chr3 42166293 42166595 -175870563 - AluJo SINE Alu -30 282 1 368 187 0 13 chr3 42166975 42167050 -175870108 + L1MB3 LINE L1 6399 6472 -209 617 144 0 0 chr3 42167050 42167140 -175870018 + 5S rRNA rRNA 1 90 -31 1014 175 27 0 chr3 42167140 42167323 -175869835 + L1MB3 LINE L1 6460 6647 -34 2009 145 0 3 chr3 42167420 42167717 -175869441 + AluSx SINE Alu 1 296 -16 829 120 49 21 chr3 42167724 42167866 -175869292 + FRAM SINE Alu 20 165 -11 384 336 123 5 chr3 42168331 42168542 -175868616 + MIR SINE MIR 4 239 -23 2584 156 8 34 chr3 42168708 42168872 -175868286 - L1MB2 LINE L1 -1 6170 6003 2284 108 0 0 chr3 42168872 42169169 -175867989 + AluSg SINE Alu 1 297 -13 2584 156 8 34 chr3 42169169 42169480 -175867678 - L1MB2 LINE L1 -168 6003 5707 270 333 11 0 chr3 42169500 42169587 -175867571 + L2 LINE L2 3222 3309 -4 2349 70 31 0 chr3 42169636 42169923 -175867235 + AluSx SINE Alu 5 300 -12 233 119 24 0 chr3 42170716 42170758 -175866400 + CT-rich Low_complexity Low_complexity 3 45 0 1555 187 0 28 chr3 42170763 42171046 -175866112 - AluJb SINE Alu -37 275 1 708 149 0 9 chr3 42171081 42171195 -175865963 - FLAM_A SINE Alu -2 140 28 1786 175 19 7 chr3 42171406 42171714 -175865444 - AluSx SINE Alu 0 312 1 1888 107 12 0 chr3 42171911 42172164 -175864994 + AluSx SINE Alu 1 256 -56 870 102 0 8 chr3 42172576 42172694 -175864464 + AluSq/x SINE Alu 20 136 -176 1991 114 3 26 chr3 42172694 42173002 -175864156 + AluSc SINE Alu 1 301 -8 322 286 67 0 chr3 42173114 42173233 -175863925 - L1M4 LINE L1 -845 5301 5175 1407 131 12 106 chr3 42173652 42173981 -175863177 + L1MB7 LINE L1 5717 6014 -170 428 153 27 19 chr3 42174641 42174728 -175862430 - L1M4 LINE L1 -1271 4875 4790 2252 114 0 0 chr3 42174728 42175026 -175862132 - AluSc SINE Alu -11 298 1 428 153 27 19 chr3 42175026 42175146 -175862012 - L1M4 LINE L1 -1356 4790 4538 985 166 0 115 chr3 42175146 42175319 -175861839 - AluJo SINE Alu -18 294 153 2262 107 0 10 chr3 42175319 42175629 -175861529 - AluSg1 SINE Alu -2 307 1 985 166 0 115 chr3 42175629 42175690 -175861468 - AluJo SINE Alu -159 153 87 1956 141 0 7 chr3 42175729 42176020 -175861138 - AluSg SINE Alu -17 293 5 2340 83 3 10 chr3 42176093 42176406 -175860752 - AluY SINE Alu 0 311 1 2336 87 7 0 chr3 42176406 42176706 -175860452 - AluSg SINE Alu -8 302 1 774 157 25 69 chr3 42177055 42177259 -175859899 + MER65A-int LTR ERV1 3536 3730 -2868 2786 201 87 95 chr3 42177337 42178594 -175858564 + MER65A-int LTR ERV1 2492 3758 -1178 1635 191 0 28 chr3 42178594 42178914 -175858244 - AluJo SINE Alu -1 311 1 2786 201 87 95 chr3 42178914 42179008 -175858150 + MER65A-int LTR ERV1 3758 3851 -1085 2149 137 0 0 chr3 42179008 42179315 -175857843 - AluSx SINE Alu -5 307 1 2786 201 87 95 chr3 42179315 42179385 -175857773 + MER65A-int LTR ERV1 3851 3920 -1016 1786 155 0 39 chr3 42179385 42179694 -175857464 - AluJb SINE Alu -13 299 3 2786 201 87 95 chr3 42179694 42179963 -175857195 + MER65A-int LTR ERV1 3920 4089 -847 1932 215 79 36 chr3 42179951 42180315 -175856843 + MER65A-int LTR ERV1 3605 3999 -872 * 2174 103 7 26 chr3 42180315 42180617 -175856541 - AluSx SINE Alu -16 296 1 1932 215 79 36 chr3 42180617 42180758 -175856400 + MER65A-int LTR ERV1 3999 4132 -739 2447 224 55 24 chr3 42180758 42181374 -175855784 + MER65A-int LTR ERV1 4237 4871 0 253 119 0 0 chr3 42181376 42181418 -175855740 + MER65A LTR ERV1 3 44 -401 2513 66 0 0 chr3 42181431 42181734 -175855424 + AluY SINE Alu 1 303 -8 2230 111 3 0 chr3 42181738 42182026 -175855132 + AluSx SINE Alu 1 289 -23 827 78 102 16 chr3 42182057 42182185 -175854973 + MER65A LTR ERV1 44 182 -263 1316 94 22 0 chr3 42182313 42182493 -175854665 + AluSg/x SINE Alu 110 293 -17 1860 250 105 29 chr3 42182570 42182924 -175854234 + L1M4 LINE L1 3977 4303 -1843 1462 183 66 4 chr3 42182924 42183197 -175853961 - AluJb SINE Alu -22 290 1 1860 250 105 29 chr3 42183197 42183641 -175853517 + L1M4 LINE L1 4303 4836 -1310 826 185 76 42 chr3 42184192 42184316 -175852842 - LTR56 LTR ERV1 0 445 327 2298 98 3 0 chr3 42184316 42184611 -175852547 - AluSc SINE Alu -9 300 5 826 185 76 42 chr3 42184611 42184806 -175852352 - LTR56 LTR ERV1 -118 327 141 722 209 228 5 chr3 42184916 42185127 -175852031 + MIR SINE MIR 2 259 -3 2578 37 7 0 chr3 42185499 42185796 -175851362 - AluY SINE Alu -12 299 1 23 54 0 0 chr3 42187062 42187099 -175850059 + AT_rich Low_complexity Low_complexity 1 37 0 2193 52 0 49 chr3 42188887 42189173 -175847985 - AluY SINE Alu 0 311 40 1736 171 0 23 chr3 42189189 42189488 -175847670 + AluJo SINE Alu 1 292 -20 329 159 0 16 chr3 42190113 42190176 -175846982 - MIR SINE MIR -131 131 70 358 43 0 0 chr3 42190697 42190743 -175846415 - L1PA3 LINE L1 -181 5974 5929 607 14 0 0 chr3 42190743 42190814 -175846344 + L1PA3 LINE L1 6082 6152 -3 2048 148 0 0 chr3 42191130 42191434 -175845724 - AluSx SINE Alu -8 304 1 1753 124 11 4 chr3 42191573 42191838 -175845320 - ERVL LTR ERVL -414 5350 5084 876 173 0 81 chr3 42191914 42192087 -175845071 + FRAM SINE Alu 1 158 -18 186 118 0 0 chr3 42192460 42192494 -175844664 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 401 317 50 35 chr3 42192927 42193129 -175844029 + MIR SINE MIR 9 213 -49 2155 112 31 0 chr3 42193376 42193662 -175843496 - AluSx SINE Alu -15 297 3 695 184 0 0 chr3 42193700 42193809 -175843349 + FLAM_C SINE Alu 2 110 -33 282 29 0 0 chr3 42193815 42193850 -175843308 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 5665 217 71 33 chr3 42194195 42194482 -175842676 - L1MEc LINE L1 -2271 3944 3669 1718 187 11 0 chr3 42194482 42194765 -175842393 + AluJo SINE Alu 10 295 -17 1975 92 96 11 chr3 42194771 42195052 -175842106 + AluY SINE Alu 1 305 -6 5665 217 71 33 chr3 42195052 42195181 -175841977 - L1MEc LINE L1 -2550 3665 3542 2104 100 52 3 chr3 42195181 42195470 -175841688 - AluSq SINE Alu -10 303 1 5665 217 71 33 chr3 42195470 42196684 -175840474 - L1MEc LINE L1 -2673 3542 2376 2106 107 28 0 chr3 42196684 42196974 -175840184 - AluY SINE Alu -13 298 1 5665 217 71 33 chr3 42196974 42197125 -175840033 - L1MEc LINE L1 -3839 2376 2232 2119 137 0 9 chr3 42197125 42197440 -175839718 - AluSx SINE Alu 0 312 1 5665 217 71 33 chr3 42197440 42197685 -175839473 - L1MEc LINE L1 -3983 2232 1842 273 57 0 0 chr3 42197685 42197720 -175839438 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1865 145 0 4 chr3 42197726 42198002 -175839156 - AluSx SINE Alu -37 275 1 1619 108 29 43 chr3 42198227 42198505 -175838653 + AluSx SINE Alu 20 293 -19 4681 223 66 18 chr3 42198506 42199719 -175837439 + L1M4 LINE L1 2209 3493 -2653 2104 100 52 3 chr3 42199719 42200008 -175837150 + AluSq SINE Alu 1 303 -10 4681 223 66 18 chr3 42200008 42200124 -175837034 + L1M4 LINE L1 3493 3602 -2544 1921 93 96 11 chr3 42200138 42200418 -175836740 - AluY SINE Alu -7 304 1 784 257 135 35 chr3 42200448 42200825 -175836333 - MER50 LTR ERV1 -298 436 22 2035 183 57 5 chr3 42200831 42201214 -175835944 - MER61C LTR ERV1 0 434 32 9047 162 49 35 chr3 42201215 42202322 -175834836 - MER41-int LTR ERV1 -917 5029 3939 2242 110 13 0 chr3 42202322 42202623 -175834535 - AluSg SINE Alu -5 305 1 2244 116 0 0 chr3 42202628 42202929 -175834229 - AluSx SINE Alu -9 303 3 9047 162 49 35 chr3 42202929 42203952 -175833206 - MER41-int LTR ERV1 -2010 3936 3214 2400 53 0 7 chr3 42203952 42204266 -175832892 - AluY SINE Alu 0 312 1 9047 162 49 35 chr3 42204266 42204277 -175832881 - MER41-int LTR ERV1 -2732 3214 3205 2158 52 0 49 chr3 42204278 42204564 -175832594 - AluY SINE Alu 0 311 40 1736 171 0 23 chr3 42204580 42204879 -175832279 + AluJo SINE Alu 1 292 -20 329 159 0 16 chr3 42205378 42205441 -175831717 - MIR SINE MIR -131 131 70 358 43 0 0 chr3 42205962 42206008 -175831150 - L1PA4 LINE L1 -181 5974 5929 607 14 0 0 chr3 42206008 42206079 -175831079 + L1PA3 LINE L1 6082 6152 -3 2048 148 0 0 chr3 42206395 42206699 -175830459 - AluSx SINE Alu -8 304 1 1753 124 11 4 chr3 42206838 42207103 -175830055 - ERVL LTR ERVL -414 5350 5084 876 173 0 81 chr3 42207179 42207352 -175829806 + FRAM SINE Alu 1 158 -18 186 118 0 0 chr3 42207725 42207759 -175829399 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 401 317 50 35 chr3 42208192 42208394 -175828764 + MIR SINE MIR 9 213 -49 2141 134 0 3 chr3 42208641 42208939 -175828219 - AluSx SINE Alu -15 297 1 863 178 0 67 chr3 42208939 42209119 -175828039 + MER50 LTR ERV1 566 733 -1 372 203 0 0 chr3 42209120 42209184 -175827974 - LTR39 LTR ERV1 -390 393 330 1077 180 14 23 chr3 42209184 42209401 -175827757 + AluJb SINE Alu 85 299 -13 754 126 8 63 chr3 42209403 42209530 -175827628 - LTR39 LTR ERV1 -446 337 218 1852 149 20 7 chr3 42209531 42209827 -175827331 + AluSq SINE Alu 1 300 -13 185 81 0 27 chr3 42209880 42209917 -175827241 + (CAAAAA)n Simple_repeat Simple_repeat 5 40 0 336 245 73 26 chr3 42210020 42210171 -175826987 + LTR23-int LTR ERV1 853 1010 -4113 1315 172 127 15 chr3 42210171 42210438 -175826720 + AluJo SINE Alu 1 297 -15 2315 71 3 3 chr3 42210498 42210781 -175826377 + AluY SINE Alu 1 310 0 211 37 0 0 chr3 42210781 42210808 -175826350 + (CAAA)n Simple_repeat Simple_repeat 2 128 0 843 236 34 14 chr3 42210878 42211086 -175826072 + LTR23-int LTR ERV1 5825 6036 -1501 443 86 0 0 chr3 42211084 42211146 -175826012 - AluSp SINE Alu -14 299 240 2525 10 0 19 chr3 42211146 42211454 -175825704 - pTR5 LTR ERV1 0 2438 2137 376 218 36 54 chr3 42211454 42211565 -175825593 - LTR30 LTR ERV1 -80 642 375 13824 27 0 4 chr3 42211565 42213751 -175823407 - pTR5 LTR ERV1 0 8399 504 635 126 35 152 chr3 42213749 42214091 -175823067 - Harlequin LTR ERV1 -5755 1141 840 * 37439 77 2 15 chr3 42214092 42219434 -175817724 - Harlequin LTR ERV1 -1935 503 1 371 235 10 0 chr3 42219434 42219532 -175817626 - LTR30 LTR ERV1 -80 642 544 954 73 0 44 chr3 42219532 42219672 -175817486 - pTR5 LTR ERV1 -413 2025 1880 1829 107 8 0 chr3 42219672 42219914 -175817244 - AluSp SINE Alu -67 246 3 954 73 0 44 chr3 42219914 42219930 -175817228 - pTR5 LTR ERV1 -558 1880 130 674 196 153 37 chr3 42219932 42220006 -175817152 + MER58C DNA MER1_type 1 65 -2355 2513 79 0 0 chr3 42220006 42220311 -175816847 - AluSc SINE Alu -1 308 4 674 196 153 37 chr3 42220311 42220425 -175816733 + MER58C DNA MER1_type 65 211 -4 306 203 108 0 chr3 42220690 42220764 -175816394 - MER47B DNA MER2_type 0 418 337 1029 193 10 34 chr3 42220764 42220971 -175816187 + AluJo SINE Alu 84 285 -27 1292 171 171 49 chr3 42220975 42221279 -175815879 - MER47B DNA MER2_type -77 341 1 780 183 108 9 chr3 42221462 42221675 -175815483 - L1MA8 LINE L1 -2 6289 6056 25 51 0 0 chr3 42221853 42221892 -175815266 + AT_rich Low_complexity Low_complexity 1 39 0 2325 96 0 7 chr3 42222100 42222401 -175814757 + AluSx SINE Alu 1 299 -13 1084 212 165 6 chr3 42222491 42222812 -175814346 - L1MD3 LINE L1 -1 7994 7623 24 0 0 0 chr3 42223090 42223114 -175814044 + AT_rich Low_complexity Low_complexity 1 24 0 1709 152 25 22 chr3 42223144 42223420 -175813738 - AluJb SINE Alu -35 277 1 309 315 103 10 chr3 42223514 42223700 -175813458 + L2 LINE L2 1221 1429 -1885 2266 113 0 13 chr3 42223700 42224009 -175813149 - AluSg SINE Alu -4 306 2 309 315 103 10 chr3 42224009 42224025 -175813133 + L2 LINE L2 1429 1442 -1872 374 246 136 88 chr3 42224076 42224532 -175812626 - L1MEd LINE L1 -4862 1257 780 267 263 21 11 chr3 42224536 42224631 -175812527 - LTR33A LTR ERVL -7 516 421 1852 134 71 0 chr3 42225839 42226122 -175811036 + AluJb SINE Alu 1 303 -9 235 214 177 102 chr3 42226555 42226770 -175810388 - L2 LINE L2 -410 2904 2674 2078 118 34 0 chr3 42227261 42227558 -175809600 - AluSx SINE Alu -5 307 1 2952 159 75 38 chr3 42228117 42228203 -175808955 + L1MB7 LINE L1 5524 5605 -579 1940 157 10 0 chr3 42228203 42228503 -175808655 + AluSx SINE Alu 1 303 -9 2952 159 75 38 chr3 42228503 42229045 -175808113 + L1MB7 LINE L1 5605 6175 -9 2311 98 3 0 chr3 42229397 42229692 -175807466 + AluSp SINE Alu 13 308 -5 582 182 81 7 chr3 42229722 42229870 -175807288 + L1MC/D LINE L1 5315 5473 -2335 361 269 76 7 chr3 42229875 42230020 -175807138 - L2 LINE L2 -804 2510 2356 959 128 0 8 chr3 42230020 42230153 -175807005 + AluSq/x SINE Alu 1 132 -180 2002 137 3 13 chr3 42230156 42230469 -175806689 + AluSg SINE Alu 1 310 0 669 155 0 9 chr3 42230680 42230796 -175806362 + FLAM_A SINE Alu 28 142 0 1146 221 4 33 chr3 42230829 42231101 -175806057 + AluJb SINE Alu 1 264 -48 313 350 28 11 chr3 42231220 42231397 -175805761 + CT-rich Low_complexity Low_complexity 1 180 0 27 56 0 0 chr3 42231730 42231766 -175805392 + GC_rich Low_complexity Low_complexity 1 36 0 1594 106 4 13 chr3 42231919 42232156 -175805002 - AluY SINE Alu -76 235 1 31 0 0 0 chr3 42232197 42232228 -175804930 + AT_rich Low_complexity Low_complexity 1 31 0 1955 127 10 19 chr3 42232565 42232879 -175804279 - AluY SINE Alu 0 311 1 1076 150 6 0 chr3 42233537 42233704 -175803454 - AluSx SINE Alu -5 305 138 207 235 0 0 chr3 42233736 42233787 -175803371 + (TA)n Simple_repeat Simple_repeat 2 52 0 2375 96 0 0 chr3 42233937 42234239 -175802919 - AluSx SINE Alu -10 302 1 888 135 0 15 chr3 42234242 42234375 -175802783 - AluSx SINE Alu -181 131 1 358 269 76 7 chr3 42234375 42234520 -175802638 + L2 LINE L2 2356 2510 -804 582 182 81 7 chr3 42234525 42234673 -175802485 - L1MC/D LINE L1 -2335 5473 5315 2392 97 0 7 chr3 42234703 42235013 -175802145 - AluSp SINE Alu -5 308 1 2242 102 20 10 chr3 42235032 42235336 -175801822 - AluSc SINE Alu -2 307 1 1421 224 20 92 chr3 42235339 42235669 -175801489 - L1MC/D LINE L1 -2210 3936 3584 2072 75 0 0 chr3 42235669 42235921 -175801237 + AluSx SINE Alu 38 289 -23 1421 224 20 92 chr3 42235921 42235985 -175801173 - L1MC/D LINE L1 -2562 3584 3581 2138 121 21 0 chr3 42235985 42236275 -175800883 + AluSx SINE Alu 1 296 -16 1421 224 20 92 chr3 42236275 42236370 -175800788 - L1MC/D LINE L1 -2565 3581 3481 2058 125 4 0 chr3 42238251 42238570 -175798588 - AluSx SINE Alu 0 320 1 2221 126 3 0 chr3 42239112 42239414 -175797744 - AluSq SINE Alu -10 303 1 27 29 0 0 chr3 42240220 42240254 -175796904 + AT_rich Low_complexity Low_complexity 1 34 0 496 231 19 0 chr3 42242340 42242444 -175794714 - MER5A DNA MER1_type -80 109 4 3275 247 52 40 chr3 42242871 42243059 -175794099 + L1MEc LINE L1 236 420 -5976 851 165 0 0 chr3 42243059 42243192 -175793966 + FLAM_C SINE Alu 1 133 0 3275 247 52 40 chr3 42243192 42243817 -175793341 + L1MEc LINE L1 420 1071 -5325 2112 129 3 23 chr3 42243817 42244127 -175793031 + AluSx SINE Alu 1 304 -8 3275 247 52 40 chr3 42244127 42244503 -175792655 + L1MEc LINE L1 1071 1441 -4955 929 172 0 0 chr3 42244504 42244649 -175792509 + AluSg/x SINE Alu 133 277 -35 183 80 0 0 chr3 42244649 42244674 -175792484 + (GA)n Simple_repeat Simple_repeat 2 26 0 822 52 10 0 chr3 42244939 42245036 -175792122 - AluY SINE Alu -213 98 1 541 261 119 0 chr3 42245036 42245254 -175791904 + L1MEc LINE L1 1610 1853 -4543 2318 95 0 3 chr3 42245256 42245561 -175791597 + AluSx SINE Alu 1 304 -8 305 294 67 0 chr3 42245673 42245792 -175791366 - L1M4 LINE L1 -845 5301 5175 2115 140 31 76 chr3 42246208 42246693 -175790465 + L1MB7 LINE L1 5713 6175 -9 200 119 48 24 chr3 42248018 42248060 -175789098 + T-rich Low_complexity Low_complexity 5 47 0 246 212 35 35 chr3 42248180 42248265 -175788893 - L1MC5 LINE L1 -24 7937 7853 238 141 78 0 chr3 42249530 42249594 -175787564 + CT-rich Low_complexity Low_complexity 3 71 0 290 125 42 0 chr3 42249600 42249648 -175787510 - U7 snRNA snRNA 0 63 14 246 79 0 53 chr3 42250129 42250167 -175786991 - Alu SINE Alu -264 36 1 2406 83 0 3 chr3 42250245 42250546 -175786612 - AluY SINE Alu -11 300 1 1076 150 6 0 chr3 42251204 42251371 -175785787 - AluSg/x SINE Alu -5 305 138 207 235 0 0 chr3 42251403 42251454 -175785704 + (TA)n Simple_repeat Simple_repeat 2 52 0 2363 87 13 0 chr3 42251604 42251902 -175785256 - AluSx SINE Alu -10 302 1 409 239 174 36 chr3 42252593 42252720 -175784438 - L1MC5 LINE L1 -37 7924 7816 2153 136 0 3 chr3 42252720 42253021 -175784137 - AluSx SINE Alu -12 300 1 409 239 174 36 chr3 42253021 42253169 -175783989 - L1MC5 LINE L1 -145 7816 7611 194 156 22 0 chr3 42255385 42255430 -175781728 + CT-rich Low_complexity Low_complexity 3 48 0 25 0 0 0 chr3 42256246 42256271 -175780887 + AT_rich Low_complexity Low_complexity 1 25 0 514 227 47 31 chr3 42257550 42257678 -175779480 - FLAM_A SINE Alu -12 130 1 584 159 0 37 chr3 42258031 42258138 -175779020 - AluJo SINE Alu -17 295 193 687 171 0 8 chr3 42258147 42258264 -175778894 - AluJo SINE Alu -186 116 1 1348 168 226 125 chr3 42258266 42259137 -175778021 - Charlie2 DNA MER1_type -36 2826 1868 967 194 17 6 chr3 42259141 42259321 -175777837 - AluJb SINE Alu -11 301 120 2373 85 0 3 chr3 42259382 42259677 -175777481 - AluSg SINE Alu -16 294 1 753 133 0 108 chr3 42259685 42259843 -175777315 - FLAM_C SINE Alu -1 142 2 289 162 297 0 chr3 42259852 42259926 -175777232 - Charlie2 DNA MER1_type -2504 278 183 588 102 19 19 chr3 42260202 42260310 -175776848 + (TAGA)n Simple_repeat Simple_repeat 2 109 0 324 289 31 23 chr3 42262016 42262144 -175775014 - L2 LINE L2 -26 3287 3159 1124 177 27 69 chr3 42262891 42263341 -175773817 - L1MA4A LINE L1 -25 6278 5787 377 284 117 22 chr3 42263658 42263880 -175773278 - L1MD2 LINE L1 0 6359 6117 * 1417 183 244 21 chr3 42263876 42264356 -175772802 - L1MD2 LINE L1 0 6359 5773 416 208 104 45 chr3 42265674 42265828 -175771330 - L1MC5 LINE L1 -55 7906 7744 300 311 49 33 chr3 42266178 42266300 -175770858 + MIR3 SINE MIR 56 179 -29 276 100 0 0 chr3 42267999 42268039 -175769119 + (T)n Simple_repeat Simple_repeat 1 40 0 764 202 40 83 chr3 42268795 42269023 -175768135 - MER58A DNA MER1_type -6 218 1 275 162 0 44 chr3 42269371 42269439 -175767719 - L1M2 LINE L1 -463 5658 5609 1672 161 48 17 chr3 42269446 42269563 -175767595 + AluJb SINE Alu 3 115 -197 372 22 0 0 chr3 42269563 42269608 -175767550 + (TAA)n Simple_repeat Simple_repeat 2 46 0 1672 161 48 17 chr3 42269608 42269781 -175767377 + AluJb SINE Alu 115 302 -10 446 272 69 6 chr3 42269839 42270012 -175767146 - L1MB7 LINE L1 0 6184 6001 357 316 141 51 chr3 42271448 42272089 -175765069 - L2 LINE L2 -4 3309 2583 647 252 122 14 chr3 42272223 42272437 -175764721 - L2 LINE L2 -976 2338 2102 279 0 0 0 chr3 42275639 42275670 -175761488 + (CTAA)n Simple_repeat Simple_repeat 2 32 0 2522 62 0 7 chr3 42275703 42276009 -175761149 - AluY SINE Alu -7 304 1 2014 130 0 31 chr3 42276153 42276476 -175760682 - AluSq SINE Alu 0 313 1 2103 68 43 7 chr3 42278753 42279033 -175758125 - AluSg SINE Alu -16 294 5 205 339 18 36 chr3 42279085 42279197 -175757961 + MER5B DNA MER1_type 69 178 0 2045 137 0 7 chr3 42279227 42279519 -175757639 - AluSx SINE Alu -22 290 1 789 137 150 7 chr3 42279882 42280035 -175757123 + MSTD LTR MaLR 222 396 0 294 179 51 3 chr3 42281013 42281094 -175756064 + L1ME3A LINE L1 5457 5538 -628 679 215 236 41 chr3 42281116 42281460 -175755698 + L1ME3A LINE L1 5656 6066 -104 2050 89 79 10 chr3 42282139 42282431 -175754727 - AluSp SINE Alu -1 312 1 274 289 66 0 chr3 42282806 42282882 -175754276 - MIR SINE MIR -88 174 94 2246 89 10 10 chr3 42283221 42283523 -175753635 - AluSp SINE Alu -11 302 1 2221 102 20 10 chr3 42283542 42283846 -175753312 - AluSc SINE Alu -2 307 1 1132 230 13 95 chr3 42283849 42284179 -175752979 - L1M4 LINE L1 -2210 3936 3580 2042 75 0 0 chr3 42284179 42284431 -175752727 + AluSx SINE Alu 38 289 -23 1132 230 13 95 chr3 42284431 42284495 -175752663 - L1M4 LINE L1 -2566 3580 3584 2114 124 21 0 chr3 42284495 42284785 -175752373 + AluSx SINE Alu 1 296 -16 1132 230 13 95 chr3 42284785 42284862 -175752296 - L1M4 LINE L1 -2561 3585 3503 2035 125 4 0 chr3 42286762 42287081 -175750077 - AluSx SINE Alu 0 320 1 2219 126 3 0 chr3 42287623 42287925 -175749233 - AluSq SINE Alu -10 303 1 27 29 0 0 chr3 42288731 42288765 -175748393 + AT_rich Low_complexity Low_complexity 1 34 0 545 224 160 19 chr3 42290799 42290955 -175746203 - MER5A DNA MER1_type -8 181 4 187 386 68 15 chr3 42291194 42291326 -175745832 - MIR3 SINE MIR -58 150 12 2950 244 49 45 chr3 42291391 42291570 -175745588 + L1MEc LINE L1 242 419 -5977 851 149 0 0 chr3 42291570 42291691 -175745467 + FLAM_C SINE Alu 1 121 -12 2950 244 49 45 chr3 42291691 42292329 -175744829 + L1MEc LINE L1 419 1068 -5328 1997 133 10 23 chr3 42292329 42292637 -175744521 + AluSx SINE Alu 1 304 -8 2950 244 49 45 chr3 42292637 42293013 -175744145 + L1MEc LINE L1 1068 1441 -4955 918 172 0 0 chr3 42293014 42293159 -175743999 + AluSg/x SINE Alu 131 275 -35 325 344 38 8 chr3 42293181 42293312 -175743846 + HAL1 LINE L1 1413 1547 -960 1406 98 0 0 chr3 42293443 42293616 -175743542 - AluSq SINE Alu -140 173 1 1333 186 74 61 chr3 42293764 42294237 -175742921 - L1MC5 LINE L1 -439 7522 7044 2218 121 0 13 chr3 42294241 42294554 -175742604 - AluSx SINE Alu -3 309 1 195 42 0 0 chr3 42294561 42294585 -175742573 + (T)n Simple_repeat Simple_repeat 1 24 0 671 267 85 8 chr3 42294603 42294861 -175742297 - L1MC4 LINE L1 -1064 6978 6701 5752 213 18 30 chr3 42294878 42295440 -175741718 - L1ME3 LINE L1 -1 6161 5594 1870 161 9 6 chr3 42295440 42295762 -175741396 - L1PA15 LINE L1 0 6165 5843 5752 213 18 30 chr3 42295762 42296731 -175740427 - L1ME3 LINE L1 -568 5594 4660 2103 145 0 0 chr3 42296731 42297034 -175740124 - AluSx SINE Alu -9 303 1 5752 213 18 30 chr3 42297034 42297564 -175739594 - L1ME3 LINE L1 -1502 4660 4125 1500 266 112 28 chr3 42297566 42297933 -175739225 - L1ME LINE L1 -573 5580 5245 2177 84 3 3 chr3 42297933 42298241 -175738917 - AluSx SINE Alu 0 308 1 2130 132 0 0 chr3 42298248 42298537 -175738621 - AluSc SINE Alu -18 291 3 1500 266 112 28 chr3 42298537 42299283 -175737875 - L1ME LINE L1 -913 5240 4364 244 135 0 0 chr3 42299307 42299344 -175737814 - Alu SINE Alu -13 289 253 433 194 76 21 chr3 42299344 42299488 -175737670 - L1ME LINE L1 -4109 2201 2050 503 114 0 0 chr3 42299612 42299682 -175737476 - AluJ/FRAM SINE Alu -18 294 225 797 269 162 41 chr3 42299727 42300042 -175737116 - L1ME LINE L1 -4501 1809 1534 1667 165 0 66 chr3 42300042 42300365 -175736793 - AluJb SINE Alu 0 303 1 797 269 162 41 chr3 42300365 42301029 -175736129 - L1ME LINE L1 -4776 1534 710 2728 174 37 7 chr3 42301968 42302281 -175734877 - L1MB5 LINE L1 -67 6107 5770 1452 204 94 3 chr3 42302281 42302599 -175734559 + MER7A DNA MER2_type 1 345 -1 2728 174 37 7 chr3 42302599 42302824 -175734334 - L1MB5 LINE L1 -404 5770 5553 274 233 89 4 chr3 42302827 42302970 -175734188 - L1MCa LINE L1 -4601 1528 1319 356 290 69 40 chr3 42303107 42303383 -175733775 - L1MCa LINE L1 -4881 1238 955 228 367 14 14 chr3 42303458 42303597 -175733561 - L1ME LINE L1 -5453 666 528 227 181 67 19 chr3 42304126 42304231 -175732927 + (TA)n Simple_repeat Simple_repeat 2 111 0 348 43 0 0 chr3 42304232 42304278 -175732880 + (TG)n Simple_repeat Simple_repeat 1 46 0 1969 141 0 4 chr3 42304278 42304555 -175732603 - AluSx SINE Alu -33 279 4 6492 146 16 51 chr3 42304557 42304867 -175732291 - L1MA4 LINE L1 -45 6255 5936 1593 206 3 3 chr3 42304867 42305163 -175731995 - AluJb SINE Alu -16 296 1 6492 146 16 51 chr3 42305163 42305188 -175731970 - L1MA4 LINE L1 -364 5936 5912 1429 160 80 23 chr3 42305188 42305450 -175731708 - AluJo SINE Alu -31 281 5 6492 146 16 51 chr3 42305450 42306329 -175730829 - L1MA4 LINE L1 -388 5912 5004 363 44 0 0 chr3 42306329 42306374 -175730784 + (CA)n Simple_repeat Simple_repeat 2 46 0 6492 146 16 51 chr3 42306374 42307407 -175729751 - L1MA4 LINE L1 -1296 5004 4052 638 220 21 0 chr3 42307402 42307588 -175729570 - L1MA4 LINE L1 -2704 3442 3253 * 261 299 26 43 chr3 42307877 42307994 -175729164 + MIR SINE MIR 73 187 -75 1038 182 6 0 chr3 42308723 42308893 -175728265 - AluSx SINE Alu -141 171 1 1990 224 52 12 chr3 42308895 42309476 -175727682 - L1M4 LINE L1 -844 5302 4699 741 194 0 8 chr3 42309528 42309662 -175727496 - FLAM_A SINE Alu 0 133 1 680 251 21 8 chr3 42309696 42309894 -175727264 - L1MC/D LINE L1 -2125 5660 5458 * 3432 240 28 47 chr3 42309868 42310222 -175726936 - L1M4 LINE L1 -1542 4604 4245 2280 100 7 3 chr3 42310222 42310523 -175726635 - AluSx SINE Alu -10 302 1 3432 240 28 47 chr3 42310523 42310771 -175726387 - L1M4 LINE L1 -1901 4245 3994 2081 129 0 10 chr3 42310771 42311073 -175726085 + AluSx SINE Alu 1 299 -13 3432 240 28 47 chr3 42311073 42311734 -175725424 - L1M4 LINE L1 -2152 3994 3365 * 6282 127 21 46 chr3 42311732 42312798 -175724360 + L1MA2 LINE L1 3476 4568 -1736 499 195 0 0 chr3 42312798 42312875 -175724283 - AluSp/q SINE Alu -38 275 199 6282 127 21 46 chr3 42312875 42314145 -175723013 + L1MA2 LINE L1 4568 5814 -490 3142 105 33 12 chr3 42314185 42314672 -175722486 + L1MA2 LINE L1 5804 6300 -4 569 270 84 9 chr3 42314673 42314899 -175722259 - L1M4 LINE L1 -2763 3383 3141 1234 156 74 33 chr3 42314901 42315169 -175721989 - AluJo SINE Alu 0 312 45 1819 197 70 29 chr3 42315170 42315252 -175721906 - L1M4 LINE L1 -3015 3131 3054 2340 100 7 3 chr3 42315252 42315561 -175721597 - AluSq SINE Alu -3 310 1 1819 197 70 29 chr3 42315561 42315960 -175721198 - L1M4 LINE L1 -3092 3054 2630 484 225 39 16 chr3 42315968 42316097 -175721061 - L1M4 LINE L1 -2392 3754 3623 513 155 21 113 chr3 42316098 42316240 -175720918 + MLT1D LTR MaLR 1 129 -376 559 203 273 0 chr3 42316288 42316431 -175720727 + MLT1D LTR MaLR 324 505 0 413 284 119 11 chr3 42316439 42316615 -175720543 - L1M4 LINE L1 -2532 3614 3420 505 248 95 9 chr3 42316626 42316836 -175720322 - L1M4 LINE L1 -2831 3315 3088 527 274 169 32 chr3 42317232 42317604 -175719554 - L1M4 LINE L1 -1592 4554 4132 2171 190 94 34 chr3 42317640 42318255 -175718903 - Zaphod DNA AcHobo -5 4026 3375 26 118 0 0 chr3 42319481 42319515 -175717643 + GC_rich Low_complexity Low_complexity 1 34 0 201 39 0 0 chr3 42319769 42319795 -175717363 + (A)n Simple_repeat Simple_repeat 1 26 0 889 221 0 0 chr3 42320160 42320323 -175716835 - FAM SINE Alu -12 163 1 1996 129 0 20 chr3 42320425 42320719 -175716439 - AluSg SINE Alu -20 290 3 675 173 0 9 chr3 42320757 42320867 -175716291 + FLAM_C SINE Alu 2 110 -33 318 26 0 0 chr3 42320873 42320912 -175716246 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 926 263 14 11 chr3 42321258 42321536 -175715622 - L1M4 LINE L1 -2271 3875 3597 1590 157 19 4 chr3 42321545 42321806 -175715352 + AluJo SINE Alu 10 274 -38 216 97 0 0 chr3 42321817 42321848 -175715310 + (TAA)n Simple_repeat Simple_repeat 3 33 0 310 169 405 14 chr3 42321848 42321996 -175715162 + L1MEc LINE L1 1842 2047 -4349 371 283 11 59 chr3 42322075 42322339 -175714819 + CT-rich Low_complexity Low_complexity 1 251 0 3364 210 30 13 chr3 42322484 42322576 -175714582 - L1MC2 LINE L1 -278 6066 5977 1506 181 27 24 chr3 42322576 42322869 -175714289 - AluJo SINE Alu -18 294 1 3364 210 30 13 chr3 42322869 42323534 -175713624 - L1MC2 LINE L1 -367 5977 5296 489 188 177 100 chr3 42323767 42323928 -175713230 - MSTA LTR MaLR -49 379 232 2206 91 0 34 chr3 42323928 42324225 -175712933 - AluSc SINE Alu -20 289 3 489 188 177 100 chr3 42324225 42324335 -175712823 - MSTA LTR MaLR -196 232 2 19964 100 23 5 chr3 42424786 42427591 -175609567 - L1P LINE L1 -3287 2859 5 201 262 184 39 chr3 42428006 42428109 -175609049 + MIR3 SINE MIR 85 202 -6 260 324 73 39 chr3 42428358 42428537 -175608621 - MIR3 SINE MIR -21 187 3 260 273 57 23 chr3 42429025 42429113 -175608045 - MIR SINE MIR -109 153 63 225 94 0 0 chr3 42430719 42430751 -175606407 + (GAAA)n Simple_repeat Simple_repeat 3 34 0 315 0 0 0 chr3 42431058 42431093 -175606065 + (ATTG)n Simple_repeat Simple_repeat 4 38 0 212 182 200 0 chr3 42431562 42431617 -175605541 + L2 LINE L2 3245 3310 -3 467 287 18 30 chr3 42431746 42431910 -175605248 + MIR SINE MIR 98 259 -3 430 302 62 19 chr3 42431958 42432146 -175605012 + MIR SINE MIR 7 199 -63 633 107 0 58 chr3 42432172 42432275 -175604883 + MER4A LTR ERV1 1 97 -567 * 1727 129 174 74 chr3 42432272 42432635 -175604523 + MER4A LTR ERV1 257 655 -9 1402 172 0 22 chr3 42432635 42432903 -175604255 + AluJo SINE Alu 11 272 -40 299 35 23 92 chr3 42433066 42433153 -175604005 + (CGGGGG)n Simple_repeat Simple_repeat 3 83 0 212 164 14 41 chr3 42433201 42433274 -175603884 + (CGGG)n Simple_repeat Simple_repeat 4 74 0 231 88 0 0 chr3 42433281 42433315 -175603843 + (G)n Simple_repeat Simple_repeat 1 34 0 252 212 23 53 chr3 42433353 42433485 -175603673 + (CGGGG)n Simple_repeat Simple_repeat 3 130 0 388 313 56 6 chr3 42433561 42433740 -175603418 - L1ME3 LINE L1 -200 5962 5775 195 100 0 0 chr3 42433798 42433828 -175603330 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 356 244 25 84 chr3 42434923 42435042 -175602116 + L2 LINE L2 3183 3294 -19 273 57 0 0 chr3 42435043 42435078 -175602080 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2011 117 0 0 chr3 42435081 42435363 -175601795 - AluSx SINE Alu -30 282 1 4162 216 63 9 chr3 42435974 42436428 -175600730 + L1MC2 LINE L1 1 429 -6135 1706 183 39 9 chr3 42436428 42436762 -175600396 - MER2 DNA MER2_type 0 344 1 4162 216 63 9 chr3 42436762 42438036 -175599122 + L1MC2 LINE L1 429 1837 -4727 * 5305 166 72 19 chr3 42438006 42439258 -175597900 + L1MC2 LINE L1 5416 6738 -24 383 301 78 54 chr3 42439438 42439770 -175597388 + L1ME2 LINE L1 3496 3835 -2729 707 234 81 38 chr3 42439789 42440126 -175597032 + L1ME2 LINE L1 5676 6023 -557 412 309 106 50 chr3 42440112 42440488 -175596670 + HAL1 LINE L1 3 399 -2108 * 2677 10 0 3 chr3 42440524 42440826 -175596332 + AluYa5 SINE Alu 1 301 -10 580 341 94 0 chr3 42440826 42441049 -175596109 - L2 LINE L2 -254 3059 2816 725 219 19 13 chr3 42441067 42441222 -175595936 - MLT1C LTR MaLR 0 467 312 424 194 5 161 chr3 42441247 42441433 -175595725 + L1ME2 LINE L1 6209 6365 -217 22 56 0 0 chr3 42441767 42441803 -175595355 + GC_rich Low_complexity Low_complexity 1 36 0 55 16 0 0 chr3 42441848 42441910 -175595248 + GC_rich Low_complexity Low_complexity 1 62 0 185 105 0 26 chr3 42442031 42442069 -175595089 + (CCCCCG)n Simple_repeat Simple_repeat 6 42 0 428 139 14 0 chr3 42442183 42442255 -175594903 - L1P LINE L1 -1170 4976 4904 1359 146 108 16 chr3 42442255 42442693 -175594465 - MER21A LTR ERV1 -364 499 1 2235 137 48 8 chr3 42442693 42442727 -175594431 - MER21A-int LTR ERV1 0 4191 4160 491 0 17 0 chr3 42442727 42442786 -175594372 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 2235 137 48 8 chr3 42442786 42443123 -175594035 - MER21A-int LTR ERV1 -31 4160 3805 5121 206 6 12 chr3 42443124 42444232 -175592926 - L1 LINE L1 -1226 4920 3819 446 285 78 90 chr3 42444365 42444887 -175592271 - L1 LINE L1 -1225 4921 4406 21 156 0 0 chr3 42444911 42444956 -175592202 + AT_rich Low_complexity Low_complexity 1 45 0 307 240 40 0 chr3 42445081 42445156 -175592002 - L1MC5 LINE L1 -385 7576 7499 186 133 0 0 chr3 42448187 42448217 -175588941 + (GA)n Simple_repeat Simple_repeat 2 31 0 183 288 121 15 chr3 42448383 42448449 -175588709 - MIR SINE MIR -163 99 27 499 208 133 0 chr3 42448499 42448619 -175588539 + MIR SINE MIR 114 249 -13 631 189 0 0 chr3 42448978 42449089 -175588069 + L1ME LINE L1 5392 5502 -662 1685 320 49 33 chr3 42449665 42450497 -175586661 - L2 LINE L2 -222 3050 2171 396 281 96 7 chr3 42452114 42452260 -175584898 - L2 LINE L2 -3 3269 3111 824 250 81 0 chr3 42452404 42452640 -175584518 - MER90 LTR ERV1 0 614 360 540 314 19 39 chr3 42453799 42454006 -175583152 + MIR SINE MIR 16 218 -44 394 222 21 69 chr3 42454185 42454329 -175582829 - MIR3 SINE MIR -11 197 61 267 330 125 22 chr3 42454506 42454730 -175582428 + L2 LINE L2 3024 3270 -2 21 0 0 0 chr3 42455915 42455936 -175581222 + AT_rich Low_complexity Low_complexity 1 21 0 280 229 230 78 chr3 42457119 42457296 -175579862 - MIR SINE MIR -18 244 45 289 363 0 0 chr3 42457762 42457853 -175579305 + C-rich Low_complexity Low_complexity 1 91 0 292 226 39 50 chr3 42458073 42458254 -175578904 + (CCA)n Simple_repeat Simple_repeat 2 180 0 859 274 73 4 chr3 42458422 42458667 -175578491 - MIR SINE MIR 0 262 1 434 277 99 7 chr3 42458845 42458986 -175578172 - MIR SINE MIR -28 234 81 24 0 0 0 chr3 42459989 42460013 -175577145 + AT_rich Low_complexity Low_complexity 1 24 0 322 285 40 60 chr3 42460664 42460815 -175576343 + L1ME1 LINE L1 5988 6135 -31 1358 147 5 0 chr3 42460815 42461039 -175576119 + AluY SINE Alu 56 280 -31 34 55 0 0 chr3 42461043 42461098 -175576060 + GC_rich Low_complexity Low_complexity 1 55 0 * 171 42 0 26 chr3 42461070 42461378 -175575780 + GC_rich Low_complexity Low_complexity 1 300 0 50 75 0 0 chr3 42461380 42461486 -175575672 + GC_rich Low_complexity Low_complexity 1 106 0 2955 169 35 11 chr3 42461776 42462349 -175574809 - L1P LINE L1 -3728 2418 1832 2230 55 44 3 chr3 42462349 42462642 -175574516 + AluY SINE Alu 1 305 -6 26 30 0 0 chr3 42462671 42462704 -175574454 + AT_rich Low_complexity Low_complexity 1 33 0 1942 112 3 22 chr3 42462751 42463063 -175574095 + AluSx SINE Alu 1 306 -6 419 224 41 20 chr3 42463439 42463537 -175573621 + FRAM SINE Alu 63 162 -4 461 255 7 83 chr3 42463537 42463612 -175573546 - L1MC4 LINE L1 -1405 6590 6534 1699 146 38 0 chr3 42463612 42463900 -175573258 - AluJb SINE Alu -13 299 1 461 255 7 83 chr3 42463900 42463990 -175573168 - L1MC4 LINE L1 -1461 6534 6439 308 390 37 18 chr3 42464254 42464418 -175572740 - L2 LINE L2 -598 2716 2550 247 284 97 8 chr3 42465024 42465158 -175572000 + L2 LINE L2 1963 2108 -1206 1583 221 31 13 chr3 42465230 42465619 -175571539 + Charlie4a DNA MER1_type 38 433 -75 1972 106 11 7 chr3 42465620 42465903 -175571255 + AluSc SINE Alu 1 284 -25 425 313 91 5 chr3 42465957 42466155 -175571003 + L2 LINE L2 2171 2385 -929 502 238 14 56 chr3 42466502 42466610 -175570548 + L2 LINE L2 3134 3236 -36 1876 142 122 47 chr3 42466610 42467012 -175570146 - MSTB1 LTR MaLR 0 432 1 502 238 14 56 chr3 42467012 42467046 -175570112 + L2 LINE L2 3236 3270 -2 183 80 0 0 chr3 42467049 42467074 -175570084 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 217 316 13 25 chr3 42467203 42467282 -175569876 - L2 LINE L2 -198 3074 2997 210 327 0 0 chr3 42467974 42468029 -175569129 + G-rich Low_complexity Low_complexity 1 55 0 262 296 19 19 chr3 42468171 42468279 -175568879 + LTR16A1 LTR ERVL 350 457 0 419 192 0 0 chr3 42468318 42468396 -175568762 + L2 LINE L2 3195 3272 0 356 341 0 0 chr3 42469460 42469586 -175567572 + G-rich Low_complexity Low_complexity 1 126 0 21 36 0 0 chr3 42469591 42469619 -175567539 + GC_rich Low_complexity Low_complexity 1 28 0 22 80 0 0 chr3 42469657 42469707 -175567451 + GC_rich Low_complexity Low_complexity 1 50 0 346 230 9 35 chr3 42469717 42469830 -175567328 + G-rich Low_complexity Low_complexity 2 111 0 203 309 0 0 chr3 42469873 42469928 -175567230 + GA-rich Low_complexity Low_complexity 3 57 0 260 282 113 8 chr3 42470277 42470401 -175566757 - L2 LINE L2 0 3272 3136 212 273 13 26 chr3 42470527 42470604 -175566554 + MIR3 SINE MIR 95 170 -38 447 52 0 0 chr3 42470756 42470814 -175566344 + (TC)n Simple_repeat Simple_repeat 2 59 0 285 29 0 0 chr3 42470814 42470848 -175566310 + (CA)n Simple_repeat Simple_repeat 2 35 0 2237 124 0 3 chr3 42471513 42471819 -175565339 + AluSx SINE Alu 1 305 -7 275 238 25 25 chr3 42471829 42471909 -175565249 + MIR SINE MIR 46 125 -83 419 195 0 11 chr3 42472831 42472918 -175564240 + L2 LINE L2 3224 3309 -4 30 0 0 0 chr3 42473213 42473243 -175563915 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr3 42473454 42473479 -175563679 + AT_rich Low_complexity Low_complexity 1 25 0 328 324 33 63 chr3 42474010 42474343 -175562815 - L2 LINE L2 -3 3310 2988 1077 153 40 22 chr3 42474507 42474735 -175562423 - L1MB7 LINE L1 -1 6183 5952 22 0 0 0 chr3 42475113 42475135 -175562023 + AT_rich Low_complexity Low_complexity 1 22 0 1695 179 3 17 chr3 42477448 42477739 -175559419 + AluJb SINE Alu 1 287 -25 6964 65 10 2 chr3 42477894 42479352 -175557806 + L1PA6 LINE L1 4691 6154 0 819 201 208 26 chr3 42480396 42480660 -175556498 + L1ME LINE L1 5371 5682 -488 550 222 0 0 chr3 42480662 42480761 -175556397 + MER33 DNA MER1_type 2 100 -224 2347 76 3 7 chr3 42480764 42481065 -175556093 + AluSg1 SINE Alu 1 300 -9 23 0 0 0 chr3 42481252 42481275 -175555883 + AT_rich Low_complexity Low_complexity 1 23 0 7723 159 27 23 chr3 42481375 42482959 -175554199 - L1P3 LINE L1 -4734 1141 2 475 317 54 5 chr3 42483202 42483423 -175553735 - MIR SINE MIR -8 254 23 243 152 0 0 chr3 42483599 42483645 -175553513 + C-rich Low_complexity Low_complexity 1 46 0 415 335 9 28 chr3 42483666 42483936 -175553222 + C-rich Low_complexity Low_complexity 1 264 0 231 203 0 0 chr3 42483969 42484033 -175553125 + C-rich Low_complexity Low_complexity 1 64 0 1806 111 8 0 chr3 42484257 42484510 -175552648 - AluSp SINE Alu -58 255 1 868 199 39 2 chr3 42484673 42484879 -175552279 - MIR SINE MIR -21 241 31 2174 111 3 0 chr3 42484881 42485178 -175551980 - AluSx SINE Alu -14 298 1 278 267 10 30 chr3 42485907 42486008 -175551150 + (TCTCTG)n Simple_repeat Simple_repeat 2 100 0 613 285 43 40 chr3 42486089 42486342 -175550816 + MIR SINE MIR 9 262 0 180 0 0 0 chr3 42486495 42486515 -175550643 + (T)n Simple_repeat Simple_repeat 1 20 0 2583 53 0 0 chr3 42486981 42487280 -175549878 - AluY SINE Alu -11 300 2 23 33 0 0 chr3 42487927 42487957 -175549201 + AT_rich Low_complexity Low_complexity 1 30 0 1610 168 88 3 chr3 42489800 42490097 -175547061 - MSTB LTR MaLR -104 322 1 1056 243 145 33 chr3 42490302 42490730 -175546428 - MLT1G1 LTR MaLR 0 595 120 280 354 25 6 chr3 42490855 42491016 -175546142 + C-rich Low_complexity Low_complexity 3 166 0 289 251 5 87 chr3 42491080 42491275 -175545883 + C-rich Low_complexity Low_complexity 2 180 0 539 250 14 7 chr3 42491512 42491652 -175545506 + L1M1 LINE L1 552 692 -6873 620 270 37 11 chr3 42491724 42491913 -175545245 + MIR SINE MIR 25 218 -44 229 198 17 52 chr3 42492726 42492842 -175544316 + (CGGGG)n Simple_repeat Simple_repeat 3 114 0 * 269 264 11 22 chr3 42492774 42492956 -175544202 + (CGGG)n Simple_repeat Simple_repeat 1 180 0 23 0 0 0 chr3 42493840 42493863 -175543295 + AT_rich Low_complexity Low_complexity 1 23 0 8813 92 6 1 chr3 42494538 42495779 -175541379 - L1P LINE L1 -2503 3643 2396 21 0 0 0 chr3 42496659 42496680 -175540478 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr3 42497967 42497988 -175539170 + (CA)n Simple_repeat Simple_repeat 2 22 0 484 126 103 0 chr3 42497992 42498079 -175539079 - LTR37B LTR ERV1 -25 443 348 332 261 53 93 chr3 42498079 42498305 -175538853 + L1MC4 LINE L1 7755 7971 -71 838 245 78 96 chr3 42498370 42498800 -175538358 - L1MC4a LINE L1 -1725 6083 5662 1509 207 81 6 chr3 42498800 42499148 -175538010 - MLT1A2 LTR MaLR 0 374 1 838 245 78 96 chr3 42499148 42499228 -175537930 - L1MC4a LINE L1 -2146 5662 5582 447 133 13 13 chr3 42500140 42500215 -175536943 - FLAM SINE Alu -18 125 51 801 142 25 0 chr3 42500241 42500361 -175536797 - FLAM_C SINE Alu -20 123 1 1444 195 21 17 chr3 42501347 42501634 -175535524 - AluJo SINE Alu -24 288 1 483 71 61 0 chr3 42504632 42504730 -175532428 + (TCTA)n Simple_repeat Simple_repeat 2 105 0 1031 149 30 1 chr3 42504792 42505086 -175532072 - MER2 DNA MER2_type -6 339 2 271 320 64 16 chr3 42505420 42505545 -175531613 + MIR3 SINE MIR 24 154 -54 384 195 22 54 chr3 42506629 42506814 -175530344 + G-rich Low_complexity Low_complexity 2 180 0 30 45 0 0 chr3 42506814 42506858 -175530300 + GC_rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chr3 42506930 42506960 -175530198 + GC_rich Low_complexity Low_complexity 1 30 0 30 83 0 0 chr3 42506989 42507061 -175530097 + GC_rich Low_complexity Low_complexity 1 72 0 3120 49 10 0 chr3 42507585 42507973 -175529185 - L1PA4 LINE L1 0 6155 5764 236 204 19 39 chr3 42508089 42508192 -175528966 + C-rich Low_complexity Low_complexity 1 101 0 486 308 12 23 chr3 42508247 42508419 -175528739 + C-rich Low_complexity Low_complexity 3 172 0 240 309 0 68 chr3 42508450 42508641 -175528517 + CT-rich Low_complexity Low_complexity 2 179 0 674 230 106 38 chr3 42510641 42510980 -175526178 + HAL1 LINE L1 1180 1541 -966 2104 125 3 13 chr3 42510982 42511293 -175525865 + AluSc SINE Alu 1 308 -1 474 297 169 38 chr3 42511341 42511786 -175525372 + MLT1J LTR MaLR 1 503 -8 1348 221 59 27 chr3 42514312 42514683 -175522475 - MLT1D LTR MaLR -3 502 120 807 284 94 54 chr3 42515116 42515691 -175521467 + L2 LINE L2 2709 3313 0 214 316 112 0 chr3 42515815 42515913 -175521245 - L2 LINE L2 -469 2845 2737 1434 221 64 3 chr3 42515918 42516273 -175520885 - L1MC4 LINE L1 -158 7650 7383 1063 218 3 71 chr3 42516396 42516706 -175520452 - L1ME2 LINE L1 -5 6161 5867 717 247 71 24 chr3 42516914 42517250 -175519908 + HAL1 LINE L1 796 1147 -1360 247 257 17 21 chr3 42517252 42517401 -175519757 + G-rich Low_complexity Low_complexity 4 236 0 30 59 0 0 chr3 42518643 42518694 -175518464 + GC_rich Low_complexity Low_complexity 1 51 0 1226 154 28 5 chr3 42520778 42520992 -175516166 - MER20 DNA MER1_type 0 219 1 26 0 0 0 chr3 42521476 42521502 -175515656 + AT_rich Low_complexity Low_complexity 1 26 0 469 264 16 23 chr3 42521670 42521799 -175515359 - MIR SINE MIR -103 159 32 189 107 0 0 chr3 42522153 42522181 -175514977 + (A)n Simple_repeat Simple_repeat 1 28 0 41 77 0 23 chr3 42522742 42522872 -175514286 + GC_rich Low_complexity Low_complexity 1 127 0 300 302 23 39 chr3 42523262 42523391 -175513767 + L2 LINE L2 3116 3242 -30 195 267 47 23 chr3 42524506 42524592 -175512566 + MIR3 SINE MIR 115 202 -6 783 299 100 18 chr3 42525369 42525710 -175511448 - MLT1H LTR MaLR -13 536 168 1529 175 25 35 chr3 42525844 42526129 -175511029 + AluJo SINE Alu 27 308 -4 2455 133 25 7 chr3 42526129 42526564 -175510594 + L1MB3 LINE L1 5557 5999 -184 1194 96 0 0 chr3 42526692 42526849 -175510309 + (C)n Simple_repeat Simple_repeat 1 157 0 280 137 34 60 chr3 42526856 42526973 -175510185 + (CGGG)n Simple_repeat Simple_repeat 4 117 0 * 371 188 22 39 chr3 42526939 42527120 -175510038 + (CGCGG)n Simple_repeat Simple_repeat 2 179 0 235 226 23 23 chr3 42527139 42527272 -175509886 + (CCCCG)n Simple_repeat Simple_repeat 4 136 0 366 260 84 32 chr3 42527701 42527855 -175509303 - HsTC2 DNA Tc2 -3 1895 16 31 92 0 0 chr3 42527985 42528072 -175509086 + GC_rich Low_complexity Low_complexity 1 87 0 23 54 0 0 chr3 42528092 42528129 -175509029 + GC_rich Low_complexity Low_complexity 1 37 0 21 71 0 0 chr3 42528173 42528215 -175508943 + GC_rich Low_complexity Low_complexity 1 42 0 240 35 0 0 chr3 42528333 42528362 -175508796 + (CCCCCT)n Simple_repeat Simple_repeat 2 30 0 989 76 7 0 chr3 42528723 42528867 -175508291 - L1MB4 LINE L1 0 6180 6036 186 359 47 19 chr3 42528869 42528975 -175508183 - L2 LINE L2 -5 3308 3200 707 276 0 0 chr3 42529192 42529337 -175507821 - MER63A DNA MER1_type -11 199 55 246 196 232 0 chr3 42530236 42530292 -175506866 + MER58 DNA MER1_type 1 69 -2351 1983 171 0 0 chr3 42531384 42531688 -175505470 - AluJb SINE Alu -8 304 1 88 35 0 0 chr3 42531889 42532005 -175505153 + GC_rich Low_complexity Low_complexity 1 116 0 349 234 0 0 chr3 42532029 42532140 -175505018 + G-rich Low_complexity Low_complexity 1 111 0 1037 209 119 4 chr3 42583589 42583857 -175453301 + MLT1E3 LTR MaLR 326 624 0 26 0 0 0 chr3 42585617 42585643 -175451515 + AT_rich Low_complexity Low_complexity 1 26 0 1542 192 19 6 chr3 42585821 42586134 -175451024 - MLT1A1 LTR MaLR 0 365 49 347 280 125 22 chr3 42586241 42586693 -175450465 + HAL1 LINE L1 1344 1896 -611 384 216 10 10 chr3 42586994 42587091 -175450067 + MLT1J2 LTR MaLR 79 175 -275 285 193 14 14 chr3 42587185 42587267 -175449891 + MLT1J2 LTR MaLR 309 428 -19 710 245 19 39 chr3 42587293 42587501 -175449657 + MIR SINE MIR 1 204 -58 861 174 78 6 chr3 42587540 42587707 -175449451 - MSTD LTR MaLR 0 396 218 626 217 102 66 chr3 42587862 42588106 -175449052 - MSTD LTR MaLR -138 258 6 322 231 111 60 chr3 42589458 42589575 -175447583 + L2 LINE L2 3185 3307 -6 3469 172 10 30 chr3 42590887 42591590 -175445568 + L1PB4 LINE L1 5467 6155 -1 243 262 16 0 chr3 42591724 42591785 -175445373 + L2 LINE L2 2990 3051 -221 25 31 0 0 chr3 42592296 42592328 -175444830 + AT_rich Low_complexity Low_complexity 1 32 0 264 253 200 0 chr3 42592966 42593061 -175444097 - MIR SINE MIR -40 222 109 335 292 73 22 chr3 42593128 42593265 -175443893 + MIR3 SINE MIR 3 146 -62 221 239 0 14 chr3 42593390 42593461 -175443697 + CT-rich Low_complexity Low_complexity 4 73 0 420 281 90 9 chr3 42593720 42594132 -175443026 + L1ME LINE L1 5066 5513 -649 759 200 0 7 chr3 42594538 42594673 -175442485 - AluJo SINE Alu -178 134 1 10034 131 5 11 chr3 42595635 42597244 -175439914 + L1PA12 LINE L1 1426 3024 -4557 721 92 17 0 chr3 42598321 42598441 -175438717 + (GA)n Simple_repeat Simple_repeat 2 123 0 330 182 26 26 chr3 42598828 42598905 -175438253 + MLT2F LTR ERVL 587 663 0 269 250 22 22 chr3 42599019 42599111 -175438047 + (CAT)n Simple_repeat Simple_repeat 2 93 0 183 387 0 0 chr3 42599132 42599194 -175437964 - MIR SINE MIR -115 93 32 228 306 22 82 chr3 42599207 42599390 -175437768 + L2 LINE L2 688 859 -2455 2088 139 0 16 chr3 42599530 42599833 -175437325 - AluSx SINE Alu -14 298 1 2265 117 0 0 chr3 42600315 42600623 -175436535 - AluSx SINE Alu -4 308 1 1251 218 17 9 chr3 42600748 42601096 -175436062 - L1M4 LINE L1 -946 5200 4850 8623 62 1 3 chr3 42601097 42602237 -175434921 + L1P LINE L1 1 1138 -5008 7491 35 1 0 chr3 42602337 42603753 -175433405 + L1PA4 LINE L1 4736 6152 -3 24 0 0 0 chr3 42603753 42603777 -175433381 + AT_rich Low_complexity Low_complexity 1 24 0 16515 36 1 0 chr3 42604377 42606500 -175430658 - L1P LINE L1 -1397 4749 2625 20196 83 12 0 chr3 42606600 42609463 -175427695 + L1P LINE L1 100 2996 -3150 1895 139 29 0 chr3 42609630 42609940 -175427218 - AluSx SINE Alu 0 318 1 300 313 0 31 chr3 42610022 42610118 -175427040 + L2 LINE L2 3195 3287 -26 257 231 0 0 chr3 42610584 42610649 -175426509 - L1ME4a LINE L1 -4 6117 6053 204 287 319 0 chr3 42611098 42611192 -175425966 - L2 LINE L2 0 3272 3149 1847 151 3 11 chr3 42611894 42612178 -175424980 + AluJo SINE Alu 1 282 -30 32 0 0 0 chr3 42613137 42613169 -175423989 + AT_rich Low_complexity Low_complexity 1 32 0 2058 93 29 11 chr3 42613316 42613621 -175423537 + AluSp SINE Alu 1 310 0 22 56 0 0 chr3 42613652 42613688 -175423470 + AT_rich Low_complexity Low_complexity 1 36 0 2003 154 28 6 chr3 42613786 42614143 -175423015 + MLT1A1 LTR MaLR 1 365 0 29 28 0 0 chr3 42614671 42614707 -175422451 + AT_rich Low_complexity Low_complexity 1 36 0 248 258 16 0 chr3 42614949 42615011 -175422147 - L1ME LINE L1 -492 5629 5567 1228 249 101 8 chr3 42615189 42615554 -175421604 - LTR16A LTR ERVL 0 450 52 2271 103 0 0 chr3 42617315 42617616 -175419542 - AluSg SINE Alu -9 301 1 356 315 63 0 chr3 42618378 42618521 -175418637 - MIR3 SINE MIR -12 196 45 913 305 53 8 chr3 42618601 42619237 -175417921 - L1MEc LINE L1 -2982 3147 2483 1047 187 42 0 chr3 42619341 42619555 -175417603 + MLT1A1 LTR MaLR 143 365 0 303 290 45 52 chr3 42619562 42619852 -175417306 - L1MEc LINE L1 -3749 2380 2093 2336 74 40 0 chr3 42619881 42620180 -175416978 - AluY SINE Alu 0 311 1 1727 148 7 49 chr3 42620440 42620599 -175416559 - AluJo SINE Alu -21 291 127 247 24 24 24 chr3 42620599 42620640 -175416518 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 1908 151 11 0 chr3 42620640 42620919 -175416239 - AluJb SINE Alu -30 282 1 1727 148 7 49 chr3 42620919 42621062 -175416096 - AluJo SINE Alu -183 129 1 613 326 91 34 chr3 42621173 42621703 -175415455 - L1MEc LINE L1 -4585 1725 1166 265 281 84 86 chr3 42621725 42622507 -175414651 - L1MEc LINE L1 -5100 1019 239 485 276 119 25 chr3 42622947 42623309 -175413849 + L1ME LINE L1 5405 5800 -321 22 56 0 0 chr3 42623352 42623388 -175413770 + AT_rich Low_complexity Low_complexity 1 36 0 286 238 168 19 chr3 42623567 42623781 -175413377 + L1ME4a LINE L1 5765 6010 -111 976 305 125 54 chr3 42626320 42626925 -175410233 - L1ME LINE L1 -803 5343 4783 198 0 0 0 chr3 42626925 42626947 -175410211 + (TA)n Simple_repeat Simple_repeat 2 23 0 976 305 125 54 chr3 42626947 42627668 -175409490 - L1ME LINE L1 -1363 4783 4060 249 255 0 31 chr3 42627723 42627821 -175409337 - L1ME LINE L1 -2192 3954 3860 816 172 0 0 chr3 42627862 42627990 -175409168 - FLAM_A SINE Alu -5 128 1 1139 208 61 20 chr3 42628205 42628551 -175408607 - L1MB7 LINE L1 0 6995 6636 1484 219 0 0 chr3 42628556 42628867 -175408291 - L1MB7 LINE L1 -467 6510 6200 1931 199 8 3 chr3 42628874 42629265 -175407893 + MER70B LTR ERVL 186 578 0 5705 236 45 45 chr3 42629269 42630559 -175406599 - L1MB7 LINE L1 -1951 5006 3718 10835 85 5 29 chr3 42630559 42632207 -175404951 + L1PA7 LINE L1 3836 5460 -694 1587 124 26 4 chr3 42632207 42632433 -175404725 + AluSc SINE Alu 1 231 -78 10835 85 5 29 chr3 42632433 42633109 -175404049 + L1PA7 LINE L1 5460 6151 -3 5705 236 45 45 chr3 42633109 42634501 -175402657 - L1MB7 LINE L1 -3239 3718 2361 24 0 0 0 chr3 42634515 42634539 -175402619 + AT_rich Low_complexity Low_complexity 1 24 0 1604 259 69 19 chr3 42634576 42635371 -175401787 - L1MB7 LINE L1 -4833 2022 1188 1935 139 17 0 chr3 42635383 42635678 -175401480 - AluSx SINE Alu -12 300 1 379 275 46 34 chr3 42636245 42636463 -175400695 - L1MB7 LINE L1 -6314 541 11 208 244 0 0 chr3 42639446 42639491 -175397667 + (CA)n Simple_repeat Simple_repeat 1 45 0 600 254 67 12 chr3 42641184 42641349 -175395809 - MIR SINE MIR -7 255 82 1385 185 120 0 chr3 42641757 42642016 -175395142 - AluJb SINE Alu -22 290 1 325 288 48 0 chr3 42643621 42643746 -175393412 + MIR SINE MIR 121 251 -11 324 355 87 7 chr3 42646068 42646206 -175390952 - L2 LINE L2 0 3272 3124 459 0 0 0 chr3 42646299 42646350 -175390808 + (TG)n Simple_repeat Simple_repeat 2 52 0 260 83 0 0 chr3 42646656 42646692 -175390466 - Alu SINE Alu -266 36 1 891 151 22 22 chr3 42646745 42646930 -175390228 + MER53 DNA DNA 4 188 -1 200 135 27 0 chr3 42647250 42647287 -175389871 + (TA)n Simple_repeat Simple_repeat 2 39 0 789 233 50 80 chr3 42647293 42647593 -175389565 - L2 LINE L2 0 3313 3023 21 0 0 0 chr3 42647593 42647614 -175389544 + AT_rich Low_complexity Low_complexity 1 21 0 1153 151 9 24 chr3 42647703 42647915 -175389243 - SVA Other Other -746 640 432 1785 298 58 67 chr3 42647915 42648765 -175388393 - L2 LINE L2 -268 3045 2206 497 245 28 14 chr3 42648768 42648911 -175388247 + LTR16A1 LTR ERVL 12 156 -301 627 253 50 10 chr3 42648968 42649166 -175387992 + LTR16A1 LTR ERVL 248 453 -4 254 186 0 0 chr3 42649819 42649878 -175387280 - L1MA5A LINE L1 0 6297 6239 37 0 0 0 chr3 42651114 42651151 -175386007 + AT_rich Low_complexity Low_complexity 1 37 0 38647 70 4 2 chr3 42651179 42657315 -175379843 - L1PA5 LINE L1 -2 6152 3 2953 115 0 2 chr3 42657314 42657776 -175379382 - L1MA5A LINE L1 -46 6251 5791 * 4385 166 3 32 chr3 42657780 42658713 -175378445 + L1 LINE L1 4252 5157 -989 1382 209 59 30 chr3 42658721 42659147 -175378011 - L1ME3 LINE L1 -1 6161 5724 233 29 29 0 chr3 42659267 42659301 -175377857 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 10557 35 1 1 chr3 42659304 42661354 -175375804 - L1PA3 LINE L1 -3 6152 4102 4954 63 1 0 chr3 42661363 42662014 -175375144 - L1P LINE L1 -5486 660 9 343 359 35 7 chr3 42662026 42662168 -175374990 - MIR3 SINE MIR -62 146 1 318 264 13 14 chr3 42663179 42663268 -175373890 - MIR SINE MIR -97 111 30 3900 197 11 36 chr3 42663935 42664156 -175373002 - L1MB4 LINE L1 -1 6179 5954 2121 70 0 0 chr3 42664156 42664413 -175372745 - AluY SINE Alu -11 300 44 1587 203 0 37 chr3 42664413 42664707 -175372451 - AluJb SINE Alu -27 285 1 3900 197 11 36 chr3 42664707 42665430 -175371728 - L1MB4 LINE L1 -224 5956 5258 32787 48 1 0 chr3 42665552 42671683 -175365475 + L1PA4 LINE L1 14 6148 -7 12717 119 15 3 chr3 42671782 42673800 -175363358 - Tigger1 DNA MER2_type 0 2418 377 471 311 106 17 chr3 42674248 42674428 -175362730 - MIR SINE MIR -44 218 23 455 286 53 8 chr3 42674755 42674888 -175362270 + MIR SINE MIR 36 174 -88 317 342 87 5 chr3 42675940 42676124 -175361034 + L2 LINE L2 2538 2736 -578 1176 247 60 8 chr3 42676171 42676555 -175360603 - LTR16C LTR ERVL -1 490 87 387 398 91 24 chr3 42676647 42677064 -175360094 + L2 LINE L2 2804 3248 -24 234 116 0 0 chr3 42677310 42677353 -175359805 + (CA)n Simple_repeat Simple_repeat 2 44 0 210 324 14 28 chr3 42677379 42677521 -175359637 + GA-rich Low_complexity Low_complexity 5 144 0 1068 211 175 14 chr3 42678307 42678751 -175358407 + LTR50 LTR ERVL 1 372 -423 501 226 9 17 chr3 42678751 42678866 -175358292 - MER81 DNA DNA 0 114 1 1068 211 175 14 chr3 42678866 42678999 -175358159 + LTR50 LTR ERVL 372 787 -8 292 279 180 18 chr3 42679230 42679341 -175357817 - MIR SINE MIR -85 177 49 260 239 65 33 chr3 42680091 42680183 -175356975 + MIR SINE MIR 90 184 -78 1318 239 72 21 chr3 42680352 42680683 -175356475 - MLT1E LTR MaLR -40 553 206 1767 181 20 0 chr3 42680856 42681149 -175356009 + AluJo SINE Alu 1 299 -13 431 186 159 28 chr3 42681180 42681325 -175355833 - MLT1E LTR MaLR -385 164 1 273 254 16 0 chr3 42682221 42682284 -175354874 + MIR SINE MIR 89 152 -56 408 247 50 85 chr3 42683163 42683368 -175353790 - MIR SINE MIR -62 146 3 196 300 8 75 chr3 42683368 42683476 -175353682 - L2 LINE L2 -629 2685 2586 212 345 83 36 chr3 42683470 42683667 -175353491 + L2 LINE L2 2016 2229 -1085 2293 83 0 7 chr3 42683667 42683967 -175353191 - AluSg SINE Alu -12 298 1 212 345 83 36 chr3 42683967 42684021 -175353137 + L2 LINE L2 2229 2279 -1035 1009 315 50 38 chr3 42684021 42684542 -175352616 + L2 LINE L2 1531 2057 -1257 225 308 48 39 chr3 42684578 42684682 -175352476 + L2 LINE L2 2212 2316 -998 1648 136 4 19 chr3 42684792 42685049 -175352109 - AluSx SINE Alu -3 309 57 235 235 0 87 chr3 42685396 42685511 -175351647 + T-rich Low_complexity Low_complexity 2 106 0 415 273 246 8 chr3 42685533 42685797 -175351361 + LTR16A1 LTR ERVL 5 331 -126 2019 102 13 3 chr3 42685835 42686138 -175351020 - L1MA3 LINE L1 -7 6298 5993 5582 194 23 10 chr3 42686138 42687532 -175349626 - L1M1 LINE L1 -2579 4986 3572 35918 82 12 11 chr3 42687546 42691325 -175345833 - L1PA6 LINE L1 -2 6152 2380 2941 135 49 6 chr3 42691325 42691813 -175345345 + MER9 LTR ERVK 1 509 -2 35918 82 12 11 chr3 42691813 42694185 -175342973 - L1PA6 LINE L1 -3774 2380 12 6756 113 23 16 chr3 42694197 42695406 -175341752 - L1M1 LINE L1 -3986 3579 2363 * 8733 154 18 10 chr3 42695405 42696889 -175340269 - L1M1 LINE L1 -6053 1512 18 589 232 49 0 chr3 42696898 42697040 -175340118 + LTR16A1 LTR ERVL 309 457 0 341 187 41 140 chr3 42697664 42697835 -175339323 + MER103 DNA DNA 1 154 -12 293 200 0 0 chr3 42697942 42697997 -175339161 - L1PA15-16 LINE L1 -3905 2944 2890 8289 135 60 6 chr3 42698004 42698588 -175338570 + L1PA11 LINE L1 3979 4530 -1644 2156 103 14 3 chr3 42698588 42698879 -175338279 + AluY SINE Alu 1 294 -17 8289 135 60 6 chr3 42698879 42700442 -175336716 + L1PA11 LINE L1 4530 6169 -5 1884 223 32 34 chr3 42700514 42701020 -175336138 - MLT1D LTR MaLR 0 505 1 290 350 43 43 chr3 42701754 42701940 -175335218 + MIR3 SINE MIR 12 197 -11 480 35 0 0 chr3 42702863 42702921 -175334237 + (CAA)n Simple_repeat Simple_repeat 2 59 0 379 276 38 9 chr3 42703273 42703378 -175333780 + MIR SINE MIR 32 139 -123 369 309 75 16 chr3 42704585 42704773 -175332385 + MIR SINE MIR 64 262 0 1258 230 64 4 chr3 42704997 42705282 -175331876 + AluJo SINE Alu 1 301 0 8401 209 46 17 chr3 42705433 42708780 -175328378 + L1PB4 LINE L1 2621 6078 -78 2050 67 63 8 chr3 42708780 42709081 -175328077 + AluY SINE Alu 1 316 0 8401 209 46 17 chr3 42709081 42709161 -175327997 + L1PB4 LINE L1 6078 6154 -2 249 83 0 0 chr3 42709247 42709283 -175327875 + (A)n Simple_repeat Simple_repeat 1 36 0 240 59 0 0 chr3 42709330 42709364 -175327794 + (TG)n Simple_repeat Simple_repeat 1 34 0 480 309 39 52 chr3 42709553 42709783 -175327375 - MIR SINE MIR -4 258 32 1052 249 81 38 chr3 42710514 42711011 -175326147 - HAL1b LINE L1 -468 880 363 452 321 71 45 chr3 42711035 42711346 -175325812 - HAL1b LINE L1 -1027 321 3 23 54 0 0 chr3 42711478 42711515 -175325643 + AT_rich Low_complexity Low_complexity 1 37 0 978 137 20 85 chr3 42711515 42711763 -175325395 - L1MB2 LINE L1 -2 6169 5938 922 158 59 34 chr3 42711863 42712073 -175325085 + THE1C LTR MaLR 180 375 0 3271 167 37 19 chr3 42712073 42712980 -175324178 - L1MB2 LINE L1 -250 5933 5019 400 293 30 23 chr3 42713804 42713937 -175323221 + MIR SINE MIR 24 157 -105 * 474 252 150 7 chr3 42713930 42714077 -175323081 - MIR SINE MIR 0 262 95 226 254 16 0 chr3 42714149 42714212 -175322946 + MIR SINE MIR 154 217 -45 2245 144 48 26 chr3 42714229 42714645 -175322513 + MSTB1 LTR MaLR 8 432 0 2258 178 96 15 chr3 42715288 42715817 -175321341 + LTR49 LTR ERV1 1 572 -23 1605 185 158 44 chr3 42716016 42716497 -175320661 + LTR10A LTR ERV1 13 548 -61 1174 213 49 31 chr3 42717919 42718512 -175318646 + MLT1E1 LTR MaLR 2 593 0 408 208 169 82 chr3 42719122 42719305 -175317853 + MIR SINE MIR 63 261 -1 298 301 49 35 chr3 42719319 42719462 -175317696 - L2 LINE L2 -213 3059 2915 434 255 87 13 chr3 42720751 42720900 -175316258 + L2 LINE L2 3154 3313 0 288 0 0 0 chr3 42721658 42721690 -175315468 + (T)n Simple_repeat Simple_repeat 1 32 0 269 246 0 0 chr3 42722207 42722268 -175314890 + MIR SINE MIR 58 118 -144 239 275 0 58 chr3 42722419 42722488 -175314670 + L2 LINE L2 3207 3271 -1 185 292 62 31 chr3 42723165 42723261 -175313897 + L2 LINE L2 1840 1938 -1376 500 214 104 32 chr3 42723338 42723492 -175313666 + MLT1J2 LTR MaLR 281 445 -5 197 390 11 0 chr3 42724965 42725060 -175312098 - MIR SINE MIR -79 183 88 235 276 0 41 chr3 42725387 42725485 -175311673 + MARNA DNA Mariner 141 234 -352 325 141 0 16 chr3 42726148 42726212 -175310946 - MER116 DNA Mariner -17 63 1 2147 231 83 0 chr3 42726414 42726947 -175310211 + MLT1G LTR MaLR 14 590 0 40 21 0 0 chr3 42727290 42727337 -175309821 + AT_rich Low_complexity Low_complexity 1 47 0 1036 158 100 32 chr3 42727337 42727527 -175309631 - AluJb SINE Alu -25 287 85 335 249 83 126 chr3 42727536 42727957 -175309201 - L1ME4a LINE L1 -12 6109 5707 195 129 0 0 chr3 42728086 42728117 -175309041 + (CA)n Simple_repeat Simple_repeat 2 32 0 189 0 0 0 chr3 42728491 42728512 -175308646 + (T)n Simple_repeat Simple_repeat 1 21 0 392 322 166 19 chr3 42728885 42729090 -175308068 + MIR SINE MIR 22 256 -6 21 57 0 0 chr3 42729112 42729147 -175308011 + AT_rich Low_complexity Low_complexity 1 35 0 1879 54 4 0 chr3 42729147 42729386 -175307772 - L1PA7 LINE L1 0 6154 5915 1085 138 12 0 chr3 42729486 42729646 -175307512 + AluSq SINE Alu 143 304 -9 2522 214 30 22 chr3 42729652 42730324 -175306834 + L1ME2 LINE L1 5487 6163 -1 589 290 62 9 chr3 42731051 42731275 -175305883 + LTR16C LTR ERVL 253 488 -3 316 331 44 52 chr3 42732108 42732310 -175304848 + MIR SINE MIR 6 209 -53 1253 212 90 20 chr3 42732315 42732759 -175304399 - Charlie4a DNA MER1_type 0 508 34 542 221 33 0 chr3 42733203 42733325 -175303833 - MER63A DNA MER1_type -33 177 52 456 182 40 0 chr3 42733745 42733844 -175303314 - MER58 DNA MER1_type 0 2420 2318 246 305 9 67 chr3 42733841 42733946 -175303212 - MER58 DNA MER1_type -242 99 1 * 370 211 84 0 chr3 42734155 42734250 -175302908 - MER103 DNA DNA -51 115 13 1220 149 22 26 chr3 42734672 42734900 -175302258 - L1PA8 LINE L1 0 6172 5946 1075 224 204 2 chr3 42735272 42735853 -175301305 - LTR50 LTR ERVL 0 795 4 228 280 27 27 chr3 42736476 42736551 -175300607 + MIR SINE MIR 48 122 -140 623 305 111 4 chr3 42737001 42737227 -175299931 - MIR SINE MIR -10 252 3 241 330 198 30 chr3 42737300 42737497 -175299661 - MIR SINE MIR -15 247 18 2492 66 0 3 chr3 42738129 42738434 -175298724 + AluY SINE Alu 1 304 -7 285 128 0 0 chr3 42739156 42739203 -175297955 + (CCCA)n Simple_repeat Simple_repeat 2 48 0 2162 117 10 0 chr3 42739272 42739572 -175297586 - AluSq SINE Alu -10 303 1 231 321 46 84 chr3 42739635 42739766 -175297392 - L2 LINE L2 0 3272 3147 1243 250 22 112 chr3 42739779 42740315 -175296843 + L2 LINE L2 2824 3311 -2 321 267 111 0 chr3 42741906 42741996 -175295162 + L2 LINE L2 3163 3262 -10 192 77 0 0 chr3 42741998 42742024 -175295134 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 252 371 72 42 chr3 42742039 42742276 -175294882 + L2 LINE L2 3025 3268 -4 284 300 146 18 chr3 42742498 42742828 -175294330 - L1ME LINE L1 -253 5868 5497 591 267 30 79 chr3 42744852 42745155 -175292003 + LTR16A1 LTR ERVL 166 453 -4 328 218 103 0 chr3 42745166 42745244 -175291914 - MIR SINE MIR -70 192 107 688 71 0 0 chr3 42745407 42745505 -175291653 + AluY SINE Alu 214 311 0 1836 27 0 0 chr3 42745505 42745729 -175291429 - L1P3 LINE L1 -455 5699 5476 1717 101 0 0 chr3 42745739 42745967 -175291191 - AluSg SINE Alu -82 228 1 1409 226 36 10 chr3 42746364 42746489 -175290669 + AluJo SINE Alu 1 121 -191 240 35 0 0 chr3 42746489 42746518 -175290640 + (TAAAA)n Simple_repeat Simple_repeat 5 33 0 1409 226 36 10 chr3 42746518 42746693 -175290465 + AluJo SINE Alu 121 309 -3 1999 145 17 26 chr3 42747427 42747778 -175289380 - MER7A DNA MER2_type 0 346 1 372 301 53 60 chr3 42748161 42748399 -175288759 - MIR SINE MIR -6 256 5 180 381 36 0 chr3 42749727 42749811 -175287347 - L2 LINE L2 -1 3312 3226 978 204 0 32 chr3 42750744 42750960 -175286198 - MER3 DNA MER1_type 0 209 1 1065 121 0 0 chr3 42751177 42751342 -175285816 + (TTTC)n Simple_repeat Simple_repeat 2 166 0 414 239 133 37 chr3 42751629 42751817 -175285341 - MIR SINE MIR -11 251 46 866 299 45 27 chr3 42752692 42753134 -175284024 - L1ME3A LINE L1 -222 6446 5997 762 125 0 0 chr3 42753171 42753275 -175283883 + L1PA8A LINE L1 6010 6113 -18 252 0 0 0 chr3 42753284 42753312 -175283846 + (TA)n Simple_repeat Simple_repeat 2 29 0 3579 233 64 14 chr3 42753313 42754464 -175282694 - L1ME3A LINE L1 -1287 5357 4149 2509 231 33 17 chr3 42754486 42755266 -175281892 - L1ME3A LINE L1 -4835 1707 915 1063 179 39 5 chr3 42755761 42755968 -175281190 + MER20 DNA MER1_type 1 214 -5 1215 152 31 121 chr3 42755990 42756371 -175280787 - MLT1A1 LTR MaLR 0 365 19 1964 65 0 16 chr3 42756610 42756928 -175280230 - AluY SINE Alu 0 352 39 23 33 0 0 chr3 42757255 42757285 -175279873 + AT_rich Low_complexity Low_complexity 1 30 0 503 46 0 0 chr3 42758321 42758386 -175278772 - L1PA8A LINE L1 -265 5866 5802 23 0 0 0 chr3 42758627 42758650 -175278508 + AT_rich Low_complexity Low_complexity 1 23 0 6023 89 3 12 chr3 42758650 42759945 -175277213 - L1PA8 LINE L1 -8 6880 5559 13373 102 102 11 chr3 42759945 42762229 -175274929 - L1PA8 LINE L1 -4207 2656 164 423 170 80 20 chr3 42764624 42764724 -175272434 - MER5C DNA MER1_type -5 319 214 600 203 15 0 chr3 42764742 42764875 -175272283 + L1MD3 LINE L1 7842 7976 -19 617 202 138 11 chr3 42764882 42765070 -175272088 - MER5C DNA MER1_type -92 232 21 195 332 32 86 chr3 42765392 42765579 -175271579 - L2 LINE L2 -140 3132 2956 1140 184 88 94 chr3 42765967 42766059 -175271099 + MLT1C LTR MaLR 10 101 -366 2325 84 3 37 chr3 42766059 42766381 -175270777 + AluY SINE Alu 1 311 0 1140 184 88 94 chr3 42766381 42766745 -175270413 + MLT1C LTR MaLR 101 463 -4 228 135 0 0 chr3 42767016 42767053 -175270105 + (TCC)n Simple_repeat Simple_repeat 3 39 0 236 191 63 16 chr3 42767572 42767635 -175269523 - MLT1K LTR MaLR -23 565 500 293 175 0 0 chr3 42768189 42768246 -175268912 - MLT2B1 LTR ERVL 0 520 464 213 139 0 0 chr3 42768260 42768303 -175268855 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 1265 187 159 89 chr3 42768303 42768731 -175268427 - MLT2B1 LTR ERVL -62 458 1 430 256 48 62 chr3 42769285 42769450 -175267708 + MIR3 SINE MIR 43 207 -1 304 296 96 0 chr3 42770176 42770291 -175266867 + L1ME4a LINE L1 5975 6100 -21 256 267 33 8 chr3 42771250 42771370 -175265788 - LTR16A1 LTR ERVL -26 431 309 2180 146 19 21 chr3 42771370 42771746 -175265412 + THE1C LTR MaLR 1 375 0 293 373 55 41 chr3 42771864 42772156 -175265002 + L2 LINE L2 2969 3264 -8 420 281 0 0 chr3 42773596 42773692 -175263466 - MIR3 SINE MIR -32 176 81 352 231 35 0 chr3 42773919 42774006 -175263152 - MIR SINE MIR -65 143 71 376 267 69 46 chr3 42774346 42774563 -175262595 - HAL1 LINE L1 -22 2485 2264 270 239 58 58 chr3 42774716 42774854 -175262304 - HAL1b LINE L1 -457 891 754 2149 123 10 0 chr3 42775216 42775518 -175261640 - AluSg SINE Alu -5 305 1 243 321 78 31 chr3 42775668 42775861 -175261297 - HAL1 LINE L1 -762 1745 1544 793 283 118 31 chr3 42775861 42776275 -175260883 - LTR16A LTR ERVL 0 450 1 490 266 51 51 chr3 42776377 42776535 -175260623 - MER91A DNA MER1_type -19 177 20 1684 188 105 3 chr3 42777546 42777897 -175259261 + MLT1B LTR MaLR 4 390 0 196 217 17 67 chr3 42778553 42778613 -175258545 + MIR SINE MIR 68 124 -138 21 0 0 0 chr3 42778882 42778903 -175258255 + AT_rich Low_complexity Low_complexity 1 21 0 219 200 22 0 chr3 42778920 42778965 -175258193 + L2 LINE L2 3264 3309 -4 24 0 0 0 chr3 42779011 42779035 -175258123 + AT_rich Low_complexity Low_complexity 1 24 0 2077 159 47 0 chr3 42780099 42780420 -175256738 + Tigger7 DNA MER2_type 1 336 -2151 4458 81 21 5 chr3 42830420 42831024 -175206134 + L1MA1 LINE L1 5679 6292 -10 30 0 0 0 chr3 42831024 42831054 -175206104 + AT_rich Low_complexity Low_complexity 1 30 0 2723 224 40 3 chr3 42831610 42832232 -175204926 + L1ME3 LINE L1 5514 6158 -4 203 367 11 0 chr3 42832710 42832800 -175204358 + L2 LINE L2 2943 3033 -239 196 272 184 0 chr3 42833578 42833681 -175203477 + MIR SINE MIR 21 142 -66 306 292 24 23 chr3 42833735 42833872 -175203286 + L1P3 LINE L1 5647 5786 -368 22 35 0 0 chr3 42834029 42834058 -175203100 + AT_rich Low_complexity Low_complexity 1 29 0 2220 262 49 50 chr3 42835443 42835870 -175201288 + MER21B LTR ERV1 1 428 -435 2334 144 31 25 chr3 42835870 42836230 -175200928 + THE1B LTR MaLR 1 362 -2 2220 262 49 50 chr3 42836230 42836557 -175200601 + MER21B LTR ERV1 428 754 -109 523 302 47 21 chr3 42836568 42836760 -175200398 - LTR16C LTR ERVL -27 464 268 241 221 0 0 chr3 42836925 42836993 -175200165 + L1MC4 LINE L1 6636 6703 -1339 24 0 0 0 chr3 42838250 42838274 -175198884 + AT_rich Low_complexity Low_complexity 1 24 0 305 282 82 0 chr3 42838430 42838540 -175198618 - L2 LINE L2 -4 3309 3191 223 219 61 73 chr3 42838540 42838622 -175198536 + MIR SINE MIR 71 151 -111 1941 98 19 0 chr3 42838627 42838893 -175198265 + L1PA13 LINE L1 5893 6163 0 831 255 77 21 chr3 42838951 42839186 -175197972 + LTR67 LTR ERVL 308 555 -2 1984 84 247 167 chr3 42839899 42840437 -175196721 - LTR12 LTR ERV1 -133 581 1 208 253 93 0 chr3 42840508 42840583 -175196575 + MIR SINE MIR 60 141 -121 2403 175 75 46 chr3 42841232 42841728 -175195430 + MER67D LTR ERV1 1 510 -4 850 170 13 156 chr3 42842538 42842632 -175194526 - L1 LINE L1 -784 5362 5256 297 73 24 0 chr3 42842632 42842673 -175194485 + MADE1 DNA Mariner 1 42 -38 850 170 13 156 chr3 42842673 42842898 -175194260 - L1 LINE L1 -890 5256 5042 1244 276 111 13 chr3 42843214 42843816 -175193342 - HAL1b LINE L1 -278 1070 410 506 270 127 51 chr3 42844164 42844473 -175192685 - L1MEc LINE L1 -4445 1802 1518 2149 185 26 24 chr3 42844473 42844890 -175192268 + LTR52 LTR ERVL 1 418 -3 506 270 127 51 chr3 42844890 42845031 -175192127 - L1MEc LINE L1 -4729 1518 1389 2083 126 0 10 chr3 42845031 42845325 -175191833 + AluSc SINE Alu 3 293 -16 506 270 127 51 chr3 42845325 42845803 -175191355 - L1MEc LINE L1 -4858 1389 806 302 261 11 43 chr3 42846050 42846142 -175191016 + L1MC4 LINE L1 6615 6703 -1339 21 0 0 0 chr3 42846461 42846482 -175190676 + AT_rich Low_complexity Low_complexity 1 21 0 2072 144 7 0 chr3 42846482 42846787 -175190371 - AluSx SINE Alu -5 307 1 668 268 22 35 chr3 42847898 42848126 -175189032 + MIR SINE MIR 38 262 0 2211 115 3 3 chr3 42848587 42848899 -175188259 - AluSx SINE Alu 0 312 1 1892 128 16 46 chr3 42850102 42850408 -175186750 - AluJb SINE Alu -15 297 1 978 82 14 48 chr3 42851047 42851194 -175185964 + AluSc SINE Alu 160 301 -8 25 0 0 0 chr3 42851194 42851219 -175185939 + AT_rich Low_complexity Low_complexity 1 25 0 797 89 0 0 chr3 42851455 42851556 -175185602 + AluS SINE Alu 2 102 -210 784 68 38 0 chr3 42851558 42851691 -175185467 + (TA)n Simple_repeat Simple_repeat 2 139 0 1553 155 80 4 chr3 42851691 42851955 -175185203 - AluJb SINE Alu -28 284 1 1065 231 31 12 chr3 42851992 42852247 -175184911 + MIR SINE MIR 1 260 -2 691 252 56 56 chr3 42852256 42852558 -175184600 + L2 LINE L2 3008 3309 -4 181 0 33 33 chr3 42853040 42853070 -175184088 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 256 212 14 16 chr3 42853303 42853376 -175183782 - MLT1J2 LTR MaLR -7 428 326 345 287 37 15 chr3 42853568 42853704 -175183454 - MLT1J2 LTR MaLR -293 157 19 487 366 60 37 chr3 42854174 42854397 -175182761 - L2 LINE L2 -1 3271 3055 1150 103 0 27 chr3 42854397 42854582 -175182576 - L1MA8 LINE L1 -1 6290 6111 487 366 60 37 chr3 42854582 42854659 -175182499 - L2 LINE L2 -217 3055 2981 2219 107 17 0 chr3 42854659 42854959 -175182199 + AluSp SINE Alu 1 305 -8 487 366 60 37 chr3 42854959 42855364 -175181794 - L2 LINE L2 -291 2981 2553 1194 253 90 31 chr3 42855512 42855935 -175181223 + LTR16A1 LTR ERVL 1 448 -9 306 270 72 9 chr3 42856344 42856455 -175180703 + MIR3 SINE MIR 86 203 -5 411 113 0 0 chr3 42856493 42856555 -175180603 + (T)n Simple_repeat Simple_repeat 1 62 0 290 275 11 79 chr3 42857185 42857374 -175179784 + GA-rich Low_complexity Low_complexity 1 176 0 236 281 16 16 chr3 42857557 42857621 -175179537 - MIR SINE MIR -185 77 14 454 284 15 17 chr3 42857706 42857883 -175179275 + MIR SINE MIR 4 176 -62 184 285 185 25 chr3 42858642 42858842 -175178316 - MIR SINE MIR -2 260 29 233 326 121 23 chr3 42859471 42859603 -175177555 + L2 LINE L2 3085 3229 -43 844 165 94 24 chr3 42859908 42860078 -175177080 - MER5A DNA MER1_type 0 189 8 387 33 49 0 chr3 42860935 42860996 -175176162 + (TCTA)n Simple_repeat Simple_repeat 4 67 0 320 312 32 51 chr3 42861041 42861198 -175175960 + HAL1 LINE L1 945 1098 -1409 242 326 34 0 chr3 42861751 42861840 -175175318 + MER94 DNA DNA 1 92 -42 683 279 24 90 chr3 42862669 42863002 -175174156 + MLT1I LTR MaLR 77 387 -22 229 197 0 56 chr3 42863768 42863839 -175173319 + G-rich Low_complexity Low_complexity 6 72 0 270 344 0 0 chr3 42864015 42864169 -175172989 + G-rich Low_complexity Low_complexity 1 154 0 765 85 0 0 chr3 42864215 42864321 -175172837 + (TTCC)n Simple_repeat Simple_repeat 1 106 0 287 284 182 7 chr3 42864524 42864672 -175172486 + MIR3 SINE MIR 34 207 -1 674 264 90 15 chr3 42865177 42865557 -175171601 - MLT1J2 LTR MaLR -11 439 2 3050 108 32 0 chr3 42866197 42866634 -175170524 + L1MA3 LINE L1 5855 6305 0 220 204 19 37 chr3 42867103 42867157 -175170001 - MIR SINE MIR -190 72 20 533 86 0 12 chr3 42867251 42867332 -175169826 + (TTCC)n Simple_repeat Simple_repeat 3 82 0 1860 143 43 3 chr3 42867336 42867636 -175169522 - AluSx SINE Alu 0 312 1 21 0 0 0 chr3 42868057 42868078 -175169080 + GC_rich Low_complexity Low_complexity 1 21 0 322 277 80 104 chr3 42869843 42870132 -175167026 - L2 LINE L2 -32 3240 2959 1082 273 111 12 chr3 42870945 42871351 -175165807 + MLT1J1 LTR MaLR 1 446 0 234 0 0 0 chr3 42872040 42872066 -175165092 + (CTG)n Simple_repeat Simple_repeat 2 27 0 3862 96 27 7 chr3 42872641 42873202 -175163956 + L1PA13 LINE L1 5572 6143 -20 234 0 0 0 chr3 42874524 42874550 -175162608 + (T)n Simple_repeat Simple_repeat 1 26 0 323 267 216 23 chr3 42875437 42875613 -175161545 - MIR SINE MIR -50 212 3 442 245 44 13 chr3 42876148 42876306 -175160852 + MIR SINE MIR 69 230 -32 201 207 0 0 chr3 42878345 42878374 -175158784 + T-rich Low_complexity Low_complexity 1 29 0 709 254 69 43 chr3 42878510 42878860 -175158298 + LTR16A LTR ERVL 92 450 0 1780 235 92 57 chr3 42879389 42880322 -175156836 - HAL1 LINE L1 -866 1641 676 433 292 134 11 chr3 42880341 42880618 -175156540 - HAL1 LINE L1 -1898 609 299 2582 118 16 5 chr3 42880618 42881049 -175156109 - Tigger4(Zombi) DNA MER2_type 0 2731 2296 322 154 123 0 chr3 42881054 42881119 -175156039 - Tigger4(Zombi) DNA MER2_type -2658 73 1 657 231 106 97 chr3 42882985 42883466 -175153692 - MLT1H LTR MaLR -7 542 15 332 282 134 12 chr3 42883869 42883986 -175153172 + MIR SINE MIR 10 137 -71 183 227 23 23 chr3 42884474 42884518 -175152640 - MIR SINE MIR -149 59 16 225 183 0 0 chr3 42884667 42884727 -175152431 + (CA)n Simple_repeat Simple_repeat 1 60 0 391 253 120 27 chr3 42885438 42885588 -175151570 - MER5A DNA MER1_type -1 188 25 1811 110 0 0 chr3 42885622 42885858 -175151300 + AluSx SINE Alu 1 236 -76 1827 179 3 7 chr3 42885894 42886190 -175150968 - AluJo SINE Alu -17 295 1 237 255 0 0 chr3 42886261 42886312 -175150846 - MIR SINE MIR -126 136 86 800 195 67 0 chr3 42886513 42886708 -175150450 - L1MD3 LINE L1 -1 7994 7787 246 240 0 0 chr3 42886897 42886947 -175150211 + LTR16A1 LTR ERVL 3 52 -405 1123 189 122 50 chr3 42887021 42887381 -175149777 + LTR16A1 LTR ERVL 58 443 -14 1055 197 45 42 chr3 42888975 42889266 -175147892 + L1MA10 LINE L1 6024 6318 -16 2293 98 0 7 chr3 42889266 42889562 -175147596 - AluSp SINE Alu -19 294 1 1055 197 45 42 chr3 42889562 42889580 -175147578 + L1MA10 LINE L1 6318 6334 0 388 248 66 16 chr3 42891041 42891162 -175145996 + MIR SINE MIR 107 233 -29 923 200 33 0 chr3 42891363 42891543 -175145615 + MER5A DNA MER1_type 2 187 -2 429 217 7 20 chr3 42893982 42894134 -175143024 + CT-rich Low_complexity Low_complexity 1 150 0 369 0 0 0 chr3 42894856 42894897 -175142261 + (CA)n Simple_repeat Simple_repeat 1 41 0 472 269 87 39 chr3 42895371 42895579 -175141579 - HAL1 LINE L1 -2279 228 11 462 236 101 34 chr3 42895898 42896076 -175141082 - L1ME LINE L1 -369 5752 5563 317 377 85 11 chr3 42897048 42897329 -175139829 + L2 LINE L2 2404 2705 -609 228 268 85 0 chr3 42897341 42897423 -175139735 + HAL1 LINE L1 4 92 -2415 240 261 0 23 chr3 42898146 42898234 -175138924 + HAL1 LINE L1 821 906 -1601 2327 85 3 10 chr3 42898438 42898744 -175138414 - AluSg SINE Alu -6 304 1 33 0 0 0 chr3 42898866 42898899 -175138259 + AT_rich Low_complexity Low_complexity 1 33 0 563 264 133 58 chr3 42899085 42899482 -175137676 - L1ME3A LINE L1 -219 5951 5525 225 262 12 12 chr3 42899580 42899664 -175137494 - L1ME3A LINE L1 -1567 4579 4496 472 275 40 56 chr3 42900380 42900755 -175136403 - L1MC5 LINE L1 -54 7907 7539 743 266 183 12 chr3 42900877 42901068 -175136090 - L1MC4a LINE L1 -1640 6168 6011 450 0 0 0 chr3 42901068 42901118 -175136040 + (TG)n Simple_repeat Simple_repeat 1 50 0 743 266 183 12 chr3 42901118 42901434 -175135724 - L1MC4a LINE L1 -1797 6011 5574 279 0 0 0 chr3 42902286 42902317 -175134841 + (TAA)n Simple_repeat Simple_repeat 1 31 0 385 253 58 89 chr3 42902538 42902728 -175134430 - MLT1H LTR MaLR -343 206 23 278 340 56 23 chr3 42902793 42903010 -175134148 - MIR3 SINE MIR -26 236 2 12659 197 39 12 chr3 42904387 42907634 -175129524 - L1 LINE L1 -821 6346 3009 300 198 19 38 chr3 42907646 42907752 -175129406 + CT-rich Low_complexity Low_complexity 1 104 0 1980 173 3 0 chr3 42907762 42908069 -175129089 - AluSx SINE Alu -2 310 3 1653 265 65 59 chr3 42908628 42908944 -175128214 - L1 LINE L1 -4158 3010 2697 896 116 0 7 chr3 42908944 42909090 -175128068 + (TTTC)n Simple_repeat Simple_repeat 4 148 0 2235 90 0 0 chr3 42909090 42909369 -175127789 - AluY SINE Alu -32 279 1 1653 265 65 59 chr3 42909369 42910495 -175126663 - L1 LINE L1 -4470 2698 1617 322 387 6 17 chr3 42911426 42911599 -175125559 - L1 LINE L1 -5970 1128 958 480 308 137 22 chr3 42911785 42912107 -175125051 + MLT1J LTR MaLR 110 468 -43 347 336 16 0 chr3 42912755 42912883 -175124275 + L2 LINE L2 2581 2710 -604 4998 152 37 10 chr3 42912885 42913886 -175123272 + L1MA7 LINE L1 5261 6288 -3 268 319 74 42 chr3 42914043 42914259 -175122899 + L2 LINE L2 2992 3214 -58 182 342 13 13 chr3 42915359 42915435 -175121723 - L3b LINE CR1 -180 1403 1328 470 291 67 56 chr3 42915766 42916034 -175121124 - HAL1b LINE L1 -46 1302 1032 611 289 76 36 chr3 42916034 42916390 -175120768 - HAL1b LINE L1 -596 752 383 2091 251 72 11 chr3 42917032 42917697 -175119461 - L1ME3A LINE L1 -11 6159 5454 410 252 140 0 chr3 42919372 42919515 -175117643 - MLT1L LTR MaLR -311 304 142 239 186 18 71 chr3 42919716 42919829 -175117329 + (TTATA)n Simple_repeat Simple_repeat 5 111 0 199 257 122 27 chr3 42922250 42922324 -175114834 + L2 LINE L2 3161 3241 -31 523 230 175 5 chr3 42923700 42923900 -175113258 - LTR16A1 LTR ERVL 0 457 224 382 316 138 13 chr3 42924408 42924633 -175112525 - L3 LINE CR1 -60 1517 1265 188 341 71 12 chr3 42925022 42925107 -175112051 + MIR SINE MIR 27 116 -92 653 329 101 10 chr3 42925226 42925810 -175111348 - L2 LINE L2 -1142 2172 1536 766 214 10 36 chr3 42927342 42927534 -175109624 - MER5A DNA MER1_type -1 188 2 2054 151 13 53 chr3 42928331 42928780 -175108378 + LTR23 LTR ERV1 7 437 0 1764 263 44 5 chr3 42929183 42929749 -175107409 - L1ME3A LINE L1 -11 6159 5572 2141 119 0 13 chr3 42929765 42930067 -175107091 + AluSx SINE Alu 1 298 -14 640 313 93 48 chr3 42930131 42930225 -175106933 + L1MC4a LINE L1 5190 5278 -892 757 309 4 0 chr3 42930225 42930481 -175106677 - MIR SINE MIR -4 258 2 640 313 93 48 chr3 42930481 42931090 -175106068 + L1MC4a LINE L1 5278 5809 -361 2123 118 3 0 chr3 42931200 42931497 -175105661 - AluSx SINE Alu -14 298 1 1820 123 0 4 chr3 42931574 42931826 -175105332 - AluSc SINE Alu -15 294 44 23 33 0 0 chr3 42932137 42932167 -175104991 + AT_rich Low_complexity Low_complexity 1 30 0 1449 211 109 32 chr3 42932383 42932858 -175104300 + MLT1H LTR MaLR 1 512 -37 265 155 52 35 chr3 42932905 42933079 -175104079 + (TA)n Simple_repeat Simple_repeat 2 178 0 1045 174 5 14 chr3 42933079 42933292 -175103866 - L1MA8 LINE L1 -105 6186 5976 347 328 104 25 chr3 42933353 42933594 -175103564 + HAL1b LINE L1 515 774 -574 3532 160 65 9 chr3 42934379 42935149 -175102009 + L1MA8 LINE L1 5475 6287 -4 269 285 77 46 chr3 42936401 42936531 -175100627 + MIR SINE MIR 18 151 -111 1292 211 63 41 chr3 42937647 42938059 -175099099 + L1ME3A LINE L1 5748 6168 -2 283 286 144 38 chr3 42938388 42938811 -175098347 + HAL1 LINE L1 1211 1678 -829 232 231 62 15 chr3 42940795 42940860 -175096298 + MIR SINE MIR 119 186 -76 277 327 30 42 chr3 42941939 42942104 -175095054 - MLT1J2 LTR MaLR -25 425 263 552 291 0 0 chr3 42942786 42942934 -175094224 + MER117 DNA MER1_type 24 171 -26 665 310 74 25 chr3 42943354 42943838 -175093320 + LTR33 LTR ERVL 14 521 0 34 24 0 0 chr3 42944239 42944280 -175092878 + AT_rich Low_complexity Low_complexity 1 41 0 189 0 0 0 chr3 42944589 42944610 -175092548 + (TCCC)n Simple_repeat Simple_repeat 2 22 0 23 0 0 0 chr3 42945411 42945434 -175091724 + AT_rich Low_complexity Low_complexity 1 23 0 6395 83 4 65 chr3 42945853 42946665 -175090493 + L1MA2 LINE L1 5219 5944 -360 2469 122 19 3 chr3 42946665 42947034 -175090124 + THE1C LTR MaLR 1 375 0 6395 83 4 65 chr3 42947034 42947365 -175089793 + L1MA2 LINE L1 5944 6294 -10 725 206 29 6 chr3 42949556 42949726 -175087432 - MSTD LTR MaLR -3 393 220 24 0 0 0 chr3 42950069 42950093 -175087065 + AT_rich Low_complexity Low_complexity 1 24 0 325 328 169 28 chr3 42950558 42950918 -175086240 + L1M4 LINE L1 3690 4100 -2046 231 331 141 0 chr3 42951495 42951616 -175085542 + MIR SINE MIR 2 139 -123 207 267 56 0 chr3 42951704 42951794 -175085364 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 23 33 0 0 chr3 42951937 42951967 -175085191 + AT_rich Low_complexity Low_complexity 1 30 0 227 175 18 35 chr3 42952114 42952171 -175084987 - MLT1J1 LTR MaLR -36 410 355 324 265 0 12 chr3 42952273 42952356 -175084802 - MLT1J2 LTR MaLR -302 148 67 201 39 0 0 chr3 42953941 42953967 -175083191 + (CA)n Simple_repeat Simple_repeat 1 26 0 1058 213 77 0 chr3 42954994 42955201 -175081957 - MER58A DNA MER1_type -1 223 1 451 330 134 14 chr3 42955331 42955540 -175081618 - MIR SINE MIR -26 236 3 917 254 60 58 chr3 42956086 42956390 -175080768 - L1ME2 LINE L1 -283 5881 5574 1542 208 7 3 chr3 42956390 42956674 -175080484 + AluJb SINE Alu 3 287 -25 917 254 60 58 chr3 42956674 42956838 -175080320 - L1ME2 LINE L1 -590 5574 5412 218 378 0 10 chr3 42957116 42957214 -175079944 + MIR SINE MIR 58 154 -108 321 242 22 11 chr3 42957694 42957785 -175079373 + MIR SINE MIR 156 247 -15 268 293 170 0 chr3 42958769 42958875 -175078283 - L2 LINE L2 -10 3262 3139 207 267 367 0 chr3 42959535 42959655 -175077503 - L2 LINE L2 -8 3264 3101 912 273 37 20 chr3 42959772 42960120 -175077038 - LTR16C LTR ERVL -5 486 133 268 281 58 41 chr3 42960912 42961033 -175076125 + MIR SINE MIR 106 228 -34 2990 142 36 17 chr3 42961585 42962106 -175075052 - LTR26B LTR ERV1 0 531 1 222 378 107 18 chr3 42962301 42962526 -175074632 + L2 LINE L2 2864 3108 -164 547 234 94 42 chr3 42962618 42962933 -175074225 + MLT1J2 LTR MaLR 67 448 -2 190 297 110 34 chr3 42963662 42963780 -175073378 - MIR SINE MIR -54 208 82 383 226 9 85 chr3 42964512 42964651 -175072507 + MIR SINE MIR 7 138 -70 428 229 130 0 chr3 42965385 42965516 -175071642 + MLT1E1 LTR MaLR 1 148 -506 323 221 13 0 chr3 42965644 42965721 -175071437 + MLT1E3 LTR MaLR 547 624 0 814 232 16 11 chr3 42966455 42966640 -175070518 - MER5A DNA MER1_type -2 187 2 514 317 107 10 chr3 42967613 42967818 -175069340 - MIR SINE MIR -4 258 34 1434 182 72 43 chr3 42967874 42968248 -175068910 + MLT1B LTR MaLR 1 385 -5 274 156 0 143 chr3 42968585 42968662 -175068496 + MLT1H LTR MaLR 481 546 -3 434 220 50 71 chr3 42968878 42969019 -175068139 + MIR SINE MIR 20 157 -105 225 299 6 128 chr3 42969431 42969595 -175067563 + MIR SINE MIR 84 227 -35 378 308 9 0 chr3 42969636 42969743 -175067415 - MIR3 SINE MIR -46 162 55 525 286 130 44 chr3 42969838 42970153 -175067005 - L3 LINE CR1 -2 1575 1234 250 191 113 113 chr3 42970381 42970549 -175066609 - L2 LINE L2 -54 3259 3092 2340 105 20 8 chr3 42970905 42971256 -175065902 + THE1A LTR MaLR 1 355 0 11107 98 29 1 chr3 42971256 42972793 -175064365 + THE1A-int LTR MaLR 1 1580 0 2211 136 8 8 chr3 42972795 42973148 -175064010 + THE1A LTR MaLR 3 355 0 243 135 0 0 chr3 42973575 42973612 -175063546 + MLT1I LTR MaLR 101 137 -272 1139 110 13 0 chr3 42973631 42973786 -175063372 - AluSq SINE Alu -109 204 48 1424 238 95 66 chr3 42975916 42976691 -175060467 + L2 LINE L2 2499 3306 -7 375 351 0 12 chr3 42976689 42976813 -175060345 - MIR SINE MIR -85 123 3 * 237 135 0 0 chr3 42977416 42977468 -175059690 + (TA)n Simple_repeat Simple_repeat 2 53 0 736 245 241 10 chr3 42977528 42977880 -175059278 + MLT1G1 LTR MaLR 77 558 -37 307 287 90 27 chr3 42978110 42978333 -175058825 - LTR16A1 LTR ERVL -220 237 1 2112 159 55 26 chr3 42980371 42980787 -175056371 + MSTC LTR MaLR 1 428 0 251 140 20 0 chr3 42980827 42980877 -175056281 + CT-rich Low_complexity Low_complexity 3 53 0 218 337 180 22 chr3 42981224 42981625 -175055533 - L2 LINE L2 -957 2357 1894 971 288 154 17 chr3 42982383 42982741 -175054417 + L2 LINE L2 2901 3307 -6 282 353 23 30 chr3 42983032 42983165 -175053993 - MIR3 SINE MIR -14 194 63 629 344 100 31 chr3 42983725 42983999 -175053159 + L2 LINE L2 1801 2055 -1259 408 281 111 96 chr3 42983999 42984540 -175052618 + MLT1H LTR MaLR 1 549 0 629 344 100 31 chr3 42984540 42985042 -175052116 + L2 LINE L2 2055 2631 -683 24 0 0 0 chr3 42985123 42985147 -175052011 + AT_rich Low_complexity Low_complexity 1 24 0 249 279 80 43 chr3 42985206 42985482 -175051676 - L1MEd LINE L1 -3519 3329 3044 241 277 0 0 chr3 42985583 42985666 -175051492 - L1MEd LINE L1 -3961 2888 2806 25 0 0 0 chr3 42986121 42986146 -175051012 + AT_rich Low_complexity Low_complexity 1 25 0 407 261 98 62 chr3 42986181 42986941 -175050217 - L1MEd LINE L1 -4703 2326 1504 352 296 26 40 chr3 42986944 42987096 -175050062 + MIR SINE MIR 113 262 0 719 310 41 35 chr3 42987159 42987553 -175049605 - L1MEd LINE L1 -5396 1442 1047 923 256 30 0 chr3 42987747 42987950 -175049208 - MER58A DNA MER1_type -15 209 1 344 258 41 31 chr3 42989649 42989746 -175047412 + MIR SINE MIR 29 126 -136 253 329 19 19 chr3 42989815 42990028 -175047130 - L1M4 LINE L1 -3595 2551 2339 222 91 0 0 chr3 42990048 42990081 -175047077 + (CA)n Simple_repeat Simple_repeat 2 34 0 709 295 73 54 chr3 42990807 42991367 -175045791 + L1MEd LINE L1 527 1097 -5022 4511 137 8 16 chr3 42991874 42992665 -175044493 - L1MA4A LINE L1 -6 6999 6216 3596 135 2 14 chr3 42992665 42993250 -175043908 + L1PB3 LINE L1 5575 6152 -2 8528 185 120 15 chr3 42993254 42995753 -175041405 - L1MA4A LINE L1 -743 6105 3456 6106 176 47 159 chr3 42995749 42996104 -175041054 - L1MA4A LINE L1 -4812 2037 1644 * 231 103 0 0 chr3 42996104 42996143 -175041015 + (TG)n Simple_repeat Simple_repeat 2 40 0 6106 176 47 159 chr3 42996143 42998077 -175039081 - L1MA4A LINE L1 -5205 1644 4 549 168 124 124 chr3 42998138 42998412 -175038746 - ORSL DNA AcHobo -1 274 1 706 279 63 35 chr3 42998426 42998741 -175038417 - LTR16C LTR ERVL 0 491 168 313 379 12 12 chr3 42999128 42999289 -175037869 + MIR3 SINE MIR 21 181 -27 375 339 79 31 chr3 42999326 42999580 -175037578 - L2 LINE L2 -5 3267 3002 255 330 19 38 chr3 43000981 43001087 -175036071 - MIR SINE MIR -80 128 25 519 280 71 48 chr3 43001405 43001902 -175035256 - MLT1G LTR MaLR -6 549 25 245 349 89 36 chr3 43002049 43002330 -175034828 - L2 LINE L2 -384 2930 2635 5028 137 17 2 chr3 43002349 43003177 -175033981 + L1PA15 LINE L1 5322 6161 -4 599 207 75 48 chr3 43003235 43003423 -175033735 + MIR SINE MIR 3 195 -67 236 293 198 0 chr3 43003416 43003532 -175033626 + L2 LINE L2 3175 3313 0 * 420 261 9 132 chr3 43003559 43003908 -175033250 + L1MC4a LINE L1 5624 5929 -1879 210 244 0 0 chr3 43003908 43003953 -175033205 + (TATG)n Simple_repeat Simple_repeat 4 48 0 361 274 83 30 chr3 43004527 43004695 -175032463 - MIR SINE MIR -21 241 65 336 291 30 70 chr3 43004737 43004936 -175032222 - MIR3 SINE MIR 0 208 18 1357 203 21 7 chr3 43005381 43005671 -175031487 + MLT1E1 LTR MaLR 2 295 -359 955 222 65 0 chr3 43005691 43005921 -175031237 + MLT1E1 LTR MaLR 410 654 0 3660 32 2 0 chr3 43006080 43006518 -175030640 + L1PA4 LINE L1 5714 6152 -3 371 336 25 18 chr3 43006667 43006822 -175030336 + MIR SINE MIR 3 155 -61 205 191 0 0 chr3 43007282 43007324 -175029834 + A-rich Low_complexity Low_complexity 2 43 0 273 289 74 25 chr3 43007873 43007994 -175029164 + MIR3 SINE MIR 82 208 0 4238 92 1 94 chr3 43008044 43008776 -175028382 + MER4A LTR ERV1 1 664 0 216 200 0 0 chr3 43009456 43009506 -175027652 + GA-rich Low_complexity Low_complexity 2 51 0 922 257 88 16 chr3 43009850 43010169 -175026989 - LTR16C LTR ERVL -1 490 149 337 282 54 20 chr3 43010811 43010960 -175026198 - MIR SINE MIR -108 154 1 424 254 92 21 chr3 43011545 43011687 -175025471 - L2 LINE L2 -1 3312 3161 231 170 0 0 chr3 43011936 43011983 -175025175 + (TG)n Simple_repeat Simple_repeat 2 48 0 290 261 0 0 chr3 43012499 43012564 -175024594 - MIR SINE MIR -11 251 187 293 229 0 31 chr3 43013361 43013457 -175023701 + (CATA)n Simple_repeat Simple_repeat 2 94 0 279 242 172 20 chr3 43014141 43014240 -175022918 + MIR3 SINE MIR 15 128 -80 663 237 11 59 chr3 43014283 43014469 -175022689 + MLT1D LTR MaLR 1 177 -328 7844 16 0 0 chr3 43014484 43015671 -175021487 - L1PA2 LINE L1 0 6155 4969 32859 55 2 1 chr3 43015773 43020130 -175017028 - L1P LINE L1 -1784 4362 1 1563 157 17 24 chr3 43020134 43020427 -175016731 + L1PA13 LINE L1 5865 6155 -8 926 178 29 6 chr3 43020437 43020611 -175016547 + MLT1D LTR MaLR 326 503 -2 206 343 65 28 chr3 43021339 43021447 -175015711 - MIR SINE MIR -149 113 2 362 322 54 42 chr3 43021982 43022221 -175014937 + MIR SINE MIR 10 251 -11 2441 100 0 0 chr3 43022392 43022702 -175014456 - AluSx SINE Alu -2 310 1 2207 118 0 0 chr3 43023090 43023379 -175013779 - AluSg SINE Alu -21 289 1 205 247 191 11 chr3 43023906 43023995 -175013163 - L2 LINE L2 -17 3255 3151 21 0 0 0 chr3 43024071 43024092 -175013066 + AT_rich Low_complexity Low_complexity 1 21 0 304 330 181 6 chr3 43024337 43024519 -175012639 - MIR SINE MIR -17 245 32 * 307 244 0 7 chr3 43024514 43024586 -175012572 + MIR SINE MIR 95 148 -60 188 299 174 48 chr3 43025589 43025756 -175011402 - MIR SINE MIR -10 252 65 665 255 53 103 chr3 43026602 43027144 -175010014 + L1MC4 LINE L1 6647 7161 -800 6799 199 42 39 chr3 43027170 43030041 -175007117 - L1MA10 LINE L1 0 6222 3367 19355 186 21 14 chr3 43030045 43032117 -175005041 - L1PA12 LINE L1 -2 7604 5548 1791 165 147 26 chr3 43032117 43032499 -175004659 + MSTA LTR MaLR 1 428 0 19355 186 21 14 chr3 43032499 43037199 -174999959 - L1PA12 LINE L1 -2058 5548 1 1078 206 36 0 chr3 43037245 43037522 -174999636 - L1MA10 LINE L1 -2656 3378 3092 3690 163 50 8 chr3 43037538 43038276 -174998882 - L1MA4A LINE L1 -23 6982 6214 5881 192 26 6 chr3 43038843 43040172 -174996986 - L1MA4A LINE L1 -814 6034 4679 * 6191 77 14 16 chr3 43040170 43041083 -174996075 - L1PA8 LINE L1 -5 6167 5257 1901 192 14 33 chr3 43041078 43041230 -174995928 - L1MA4A LINE L1 -2158 4690 4537 * 2398 82 0 0 chr3 43041230 43041524 -174995634 - AluY SINE Alu -17 294 1 1901 192 14 33 chr3 43041524 43041809 -174995349 - L1MA4A LINE L1 -2311 4537 4260 2607 98 40 21 chr3 43041809 43042238 -174994920 - L1MA1 LINE L1 0 6302 5866 1901 192 14 33 chr3 43042238 43042283 -174994875 - L1MA4A LINE L1 -2588 4260 4216 5269 215 23 36 chr3 43042283 43043547 -174993611 - L1MA4A LINE L1 -4896 1953 706 2809 273 75 27 chr3 43043560 43047181 -174989977 - L1MA10 LINE L1 -2942 3092 11 230 135 0 0 chr3 43047194 43047231 -174989927 + L1MC5 LINE L1 7173 7209 -752 355 282 89 8 chr3 43047385 43047509 -174989649 + L1MC5 LINE L1 7270 7403 -558 933 278 39 66 chr3 43047638 43047807 -174989351 + MLT1H LTR MaLR 68 240 -355 1676 181 24 0 chr3 43047807 43048099 -174989059 - AluJo SINE Alu -13 299 1 933 278 39 66 chr3 43048099 43048423 -174988735 + MLT1H LTR MaLR 240 595 0 425 37 0 0 chr3 43048668 43048763 -174988395 + L1PA4 LINE L1 6089 6155 0 4563 151 19 3 chr3 43048763 43050235 -174986923 - L1PA14 LINE L1 -297 5864 4379 910 253 93 27 chr3 43050255 43050556 -174986602 - MLT1D LTR MaLR -175 330 10 562 211 0 0 chr3 43050599 43050708 -174986450 - MLT1D LTR MaLR -396 109 1 382 311 15 8 chr3 43050758 43050890 -174986268 + MIR SINE MIR 74 206 -56 1814 179 42 6 chr3 43050942 43051278 -174985880 + MER7A DNA MER2_type 1 346 0 263 290 48 10 chr3 43051278 43051417 -174985741 - MLT1J2 LTR MaLR -2 444 300 299 306 31 0 chr3 43051443 43051541 -174985617 - MLT1J2 LTR MaLR -209 241 141 331 236 34 11 chr3 43051554 43051643 -174985515 - MLT1J1 LTR MaLR -355 91 1 428 313 192 31 chr3 43051907 43052542 -174984616 - L2 LINE L2 -1003 2311 1575 22 56 0 0 chr3 43052885 43052921 -174984237 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr3 43053069 43053098 -174984060 + AT_rich Low_complexity Low_complexity 1 29 0 560 319 29 21 chr3 43053484 43053722 -174983436 + L2 LINE L2 3074 3313 0 322 333 0 17 chr3 43054047 43054167 -174982991 - L2 LINE L2 0 3313 3196 277 308 165 0 chr3 43054204 43054337 -174982821 + L2 LINE L2 3117 3271 -1 340 268 24 47 chr3 43054491 43054618 -174982540 - MIR SINE MIR -2 260 137 215 345 0 0 chr3 43055220 43055278 -174981880 + MIR SINE MIR 53 110 -152 2177 145 53 13 chr3 43055291 43055685 -174981473 - MSTA LTR MaLR 0 428 19 180 125 0 0 chr3 43056016 43056048 -174981110 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 225 310 178 47 chr3 43056156 43056285 -174980873 + L2 LINE L2 3127 3272 0 25072 44 40 2 chr3 43057060 43060399 -174976759 - L1P LINE L1 -2681 3465 1 635 240 208 8 chr3 43060427 43060677 -174976481 + MLT1D LTR MaLR 191 490 -15 215 306 174 50 chr3 43061416 43061537 -174975621 - L2 LINE L2 0 3272 3137 2121 92 9 0 chr3 43061859 43062186 -174974972 + L1P LINE L1 1179 1508 -4638 * 12362 23 0 0 chr3 43062179 43063689 -174973469 + L1P LINE L1 3447 4956 -1190 5835 58 5 3 chr3 43063793 43064751 -174972407 - L1PA4 LINE L1 -144 6011 5051 23 54 0 0 chr3 43064891 43064928 -174972230 + GC_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr3 43065123 43065146 -174972012 + GC_rich Low_complexity Low_complexity 1 23 0 1733 224 13 34 chr3 43065277 43065720 -174971438 + MLT1E3 LTR MaLR 233 624 0 27 89 0 0 chr3 43066374 43066419 -174970739 + GC_rich Low_complexity Low_complexity 1 45 0 439 249 53 34 chr3 43066682 43066891 -174970267 + L1MC5 LINE L1 7714 7926 -35 22 0 0 0 chr3 43067579 43067601 -174969557 + AT_rich Low_complexity Low_complexity 1 22 0 212 370 58 0 chr3 43067682 43067836 -174969322 - MIR SINE MIR -9 253 91 5660 65 5 3 chr3 43069710 43070470 -174966688 - L1PA7 LINE L1 -3 6151 5390 252 0 0 0 chr3 43070470 43070498 -174966660 + (TTA)n Simple_repeat Simple_repeat 3 30 0 33859 92 28 9 chr3 43070498 43076532 -174960626 - L1PA6 LINE L1 -18 6136 2 6257 98 2 0 chr3 43076534 43077484 -174959674 - L1PA7 LINE L1 -749 5397 4446 366 279 61 34 chr3 43077503 43077650 -174959508 + MIR3 SINE MIR 55 205 -3 578 296 32 8 chr3 43077753 43078006 -174959152 + L1ME LINE L1 5521 5779 -391 2519 207 24 0 chr3 43078346 43078920 -174958238 - L1MB7 LINE L1 -217 5967 5380 22 0 0 0 chr3 43078948 43078970 -174958188 + AT_rich Low_complexity Low_complexity 1 22 0 4410 176 23 32 chr3 43078981 43079948 -174957210 - L1MA7 LINE L1 -10 6281 5324 609 164 0 29 chr3 43079953 43080057 -174957101 - FRAM SINE Alu -24 152 52 475 205 5 146 chr3 43080450 43080655 -174956503 + MER51C LTR ERV1 453 628 -12 342 77 92 31 chr3 43080664 43080729 -174956429 + MER51C-int LTR ERV1 1 69 -7747 2002 131 3 16 chr3 43080944 43081249 -174955909 - AluSx SINE Alu -11 301 1 295 135 21 146 chr3 43081519 43081615 -174955543 + MER51C-int LTR ERV1 698 781 -7035 * 304 345 23 0 chr3 43081613 43081787 -174955371 + PRIMA41-int LTR ERV1 2643 2820 -4936 5733 178 30 14 chr3 43081987 43083242 -174953916 - L1MA7 LINE L1 -1185 4961 3688 3262 199 61 150 chr3 43083247 43084392 -174952766 - L1MB7 LINE L1 -768 5378 4331 894 220 18 0 chr3 43084392 43084560 -174952598 + AluJb SINE Alu 133 303 -9 3262 199 61 150 chr3 43084560 43085393 -174951765 - L1MB7 LINE L1 -1815 4331 3425 25 0 0 0 chr3 43085431 43085456 -174951702 + AT_rich Low_complexity Low_complexity 1 25 0 310 157 14 14 chr3 43085502 43085572 -174951586 + CT-rich Low_complexity Low_complexity 1 70 0 435 313 44 53 chr3 43085573 43085714 -174951444 - L2 LINE L2 -13 3300 3160 252 59 0 0 chr3 43085714 43085748 -174951410 + (CA)n Simple_repeat Simple_repeat 2 35 0 435 313 44 53 chr3 43085748 43085833 -174951325 - L2 LINE L2 -153 3160 3076 23 0 0 0 chr3 43086045 43086068 -174951090 + AT_rich Low_complexity Low_complexity 1 23 0 387 300 253 17 chr3 43087248 43087481 -174949677 - L3 LINE CR1 -88 1489 1202 1680 104 9 0 chr3 43088746 43088966 -174948192 - AluSg/x SINE Alu -24 288 67 947 274 104 40 chr3 43089143 43089548 -174947610 - LTR16A1 LTR ERVL 0 457 27 2184 127 0 13 chr3 43089849 43090163 -174946995 - AluSx SINE Alu -2 310 1 424 118 153 12 chr3 43090163 43090222 -174946936 + L1MA9 LINE L1 6093 6169 -143 216 67 0 0 chr3 43090222 43090252 -174946906 + (CA)n Simple_repeat Simple_repeat 1 30 0 424 118 153 12 chr3 43090252 43090277 -174946881 + L1MA9 LINE L1 6169 6189 -123 191 263 158 12 chr3 43090390 43090511 -174946647 - MIR SINE MIR -58 150 17 2395 82 0 0 chr3 43091136 43091428 -174945730 + AluY SINE Alu 1 292 -19 292 264 124 0 chr3 43091568 43091697 -174945461 + Charlie7 DNA MER1_type 331 475 -2137 1590 219 41 0 chr3 43091707 43092073 -174945085 - L1PA16 LINE L1 -1 6165 5785 276 239 0 15 chr3 43092075 43092142 -174945016 + (TA)n Simple_repeat Simple_repeat 2 67 0 2689 174 36 32 chr3 43092142 43093248 -174943910 - L1PA16 LINE L1 -364 5792 4670 229 221 91 13 chr3 43093428 43093505 -174943653 + LTR16A1 LTR ERVL 223 305 -152 355 266 177 0 chr3 43093602 43093726 -174943432 + MIR SINE MIR 85 230 -32 786 249 62 97 chr3 43094096 43094561 -174942597 - LTR16A1 LTR ERVL -2 455 7 632 167 84 9 chr3 43094690 43094905 -174942253 - Charlie5 DNA MER1_type 0 2620 2390 229 309 89 41 chr3 43095091 43095214 -174941944 + MIR SINE MIR 23 151 -111 593 219 0 39 chr3 43095502 43095630 -174941528 - FLAM_A SINE Alu -10 123 1 206 257 40 40 chr3 43095683 43095757 -174941401 - MIR3 SINE MIR -12 196 123 621 130 38 8 chr3 43096287 43096418 -174940740 - Charlie5 DNA MER1_type -27 2585 2451 783 261 32 9 chr3 43097771 43097989 -174939169 + MER58A DNA MER1_type 1 223 -1 777 251 130 0 chr3 43098000 43098247 -174938911 - LTR16C LTR ERVL 0 491 213 701 246 50 61 chr3 43098699 43098976 -174938182 - MLT1H LTR MaLR -257 292 19 1603 110 5 0 chr3 43099125 43099334 -174937824 - AluSc SINE Alu -94 215 6 340 135 56 8 chr3 43099501 43099627 -174937531 + (TA)n Simple_repeat Simple_repeat 1 132 0 242 305 59 69 chr3 43100754 43100957 -174936201 - L2 LINE L2 -96 3176 2976 796 277 60 8 chr3 43101215 43101450 -174935708 - MIR SINE MIR -15 247 1 3265 308 112 35 chr3 43101504 43101909 -174935249 - L2 LINE L2 -12 3301 2929 2305 114 3 0 chr3 43101909 43102215 -174934943 + AluSp SINE Alu 1 307 -6 3265 308 112 35 chr3 43102215 43102352 -174934806 - L2 LINE L2 -384 2929 2804 1958 121 4 0 chr3 43102352 43102625 -174934533 - AluY SINE Alu -5 306 33 3265 308 112 35 chr3 43102625 43104173 -174932985 - L2 LINE L2 -509 2804 1039 243 299 15 15 chr3 43104398 43104465 -174932693 - L2 LINE L2 -9 3304 3238 305 352 99 58 chr3 43104679 43105245 -174931913 - L2 LINE L2 -340 2974 2386 978 298 63 19 chr3 43105270 43105699 -174931459 + MLT1J2 LTR MaLR 1 448 -2 191 298 226 44 chr3 43106029 43106458 -174930700 - L2 LINE L2 -1457 1857 1351 884 216 53 5 chr3 43107030 43107238 -174929920 - MER20 DNA MER1_type -1 218 1 437 238 57 29 chr3 43109524 43109734 -174927424 - MER69 DNA AcHobo -1 2525 2310 204 226 0 0 chr3 43109776 43109829 -174927329 + (TA)n Simple_repeat Simple_repeat 1 53 0 2648 259 100 33 chr3 43109889 43110881 -174926277 - MER69 DNA AcHobo -1460 1066 9 491 154 0 19 chr3 43110944 43111048 -174926110 + (TTCA)n Simple_repeat Simple_repeat 3 104 0 2172 101 0 7 chr3 43111158 43111446 -174925712 + AluSg SINE Alu 21 306 -4 2476 69 7 0 chr3 43112270 43112576 -174924582 - AluY SINE Alu -3 308 1 272 281 31 10 chr3 43113457 43113553 -174923605 - MER58C DNA MER1_type -6 209 112 182 207 17 0 chr3 43113571 43113629 -174923529 + CT-rich Low_complexity Low_complexity 3 61 0 415 291 24 0 chr3 43113642 43113769 -174923389 - MER58C DNA MER1_type -85 130 1 247 276 79 0 chr3 43113920 43113996 -174923162 - MIR SINE MIR -79 183 102 891 354 78 20 chr3 43114075 43114687 -174922471 - L2 LINE L2 -267 3046 2395 481 302 206 0 chr3 43114929 43115118 -174922040 + MIR SINE MIR 11 238 -24 231 232 11 21 chr3 43115133 43115228 -174921930 + CT-rich Low_complexity Low_complexity 2 95 0 1730 182 7 0 chr3 43115652 43115943 -174921215 - AluJo SINE Alu -8 304 12 5428 35 23 13 chr3 43116872 43117557 -174919601 - L1PA4 LINE L1 -1 6154 5463 331 294 103 57 chr3 43118259 43118453 -174918705 - MIR SINE MIR -3 259 57 902 314 124 33 chr3 43119493 43120434 -174916724 + L2 LINE L2 2264 3297 -16 896 170 0 12 chr3 43120439 43120604 -174916554 + L1PA16 LINE L1 6003 6165 -1 267 343 75 33 chr3 43120669 43120882 -174916276 - MIR SINE MIR -11 251 30 434 293 58 0 chr3 43121393 43121461 -174915697 + L1M4c LINE L1 1276 1339 -5045 1505 137 30 7 chr3 43121461 43121731 -174915427 + L1PA16 LINE L1 5888 6163 -3 434 293 58 0 chr3 43121731 43121853 -174915305 + L1M4c LINE L1 1339 1477 -4907 1495 247 81 36 chr3 43121904 43122435 -174914723 - MLT1E3 LTR MaLR 0 624 70 307 196 216 21 chr3 43122538 43122635 -174914523 + L1ME LINE L1 5703 5818 -346 501 245 264 19 chr3 43122647 43122859 -174914299 - L2 LINE L2 -2498 816 553 1553 110 252 139 chr3 43122863 43123528 -174913630 - LTR12 LTR ERV1 -133 2032 57 231 231 0 0 chr3 43123528 43123580 -174913578 - LTR30 LTR ERV1 -670 52 1 3675 99 4 0 chr3 43123580 43124113 -174913045 - HERV9 LTR ERV1 0 8399 7865 1830 103 13 32 chr3 43124110 43124893 -174912265 - HERV9 LTR ERV1 -5202 1694 711 * 1181 128 11 0 chr3 43124894 43125081 -174912077 - HERV9 LTR ERV1 -3455 4944 4756 * 19903 100 16 8 chr3 43125080 43128030 -174909128 - HERV9 LTR ERV1 -5427 2972 1 4312 85 172 42 chr3 43128030 43128761 -174908397 - LTR12 LTR ERV1 0 826 1 33 0 0 0 chr3 43130529 43130562 -174906596 + AT_rich Low_complexity Low_complexity 1 33 0 243 0 0 0 chr3 43131726 43131753 -174905405 + (T)n Simple_repeat Simple_repeat 1 27 0 215 133 80 0 chr3 43132233 43132308 -174904850 + (TA)n Simple_repeat Simple_repeat 1 81 0 695 221 55 44 chr3 43132595 43132776 -174904382 - MER63A DNA MER1_type -9 201 19 298 309 193 34 chr3 43132954 43133249 -174903909 - L2 LINE L2 -337 2977 2636 452 281 23 41 chr3 43133407 43133578 -174903580 - L2 LINE L2 -940 2374 2207 355 311 48 30 chr3 43133588 43133755 -174903403 - L2 LINE L2 -1065 2249 2080 6295 146 19 2 chr3 43133841 43134858 -174902300 + Tigger1 DNA MER2_type 1385 2418 0 312 289 64 45 chr3 43135366 43135678 -174901480 + L1M4 LINE L1 3390 3707 -2439 397 303 124 11 chr3 43135938 43136116 -174901042 - MIR SINE MIR -34 228 31 1070 268 89 66 chr3 43138227 43138619 -174898539 - MLT1H LTR MaLR -104 445 45 1665 222 40 31 chr3 43138931 43139377 -174897781 + LTR16A1 LTR ERVL 8 457 0 241 373 151 19 chr3 43139961 43140272 -174896886 + L2 LINE L2 2622 2973 -341 899 205 5 0 chr3 43140707 43140892 -174896266 - L1 LINE L1 -2157 3989 3804 * 1188 216 8 0 chr3 43140888 43141133 -174896025 + L1MA9 LINE L1 4645 4891 -1255 632 212 15 0 chr3 43141130 43141267 -174895891 + L1MA9 LINE L1 5324 5462 -706 * 1180 217 26 39 chr3 43141268 43141577 -174895581 + L1MA9 LINE L1 5971 6275 -37 942 308 26 24 chr3 43141914 43142330 -174894828 + LTR16B LTR ERVL 36 452 -12 922 219 153 142 chr3 43142342 43142907 -174894251 + L2 LINE L2 1731 2311 -1003 369 0 0 0 chr3 43142907 43142948 -174894210 + (CCAA)n Simple_repeat Simple_repeat 4 44 0 922 219 153 142 chr3 43142948 43143223 -174893935 + L2 LINE L2 2311 2581 -733 263 157 0 20 chr3 43143343 43143394 -174893764 + L2 LINE L2 3263 3312 -1 188 317 32 57 chr3 43143818 43143941 -174893217 + MIR SINE MIR 136 255 -7 285 325 107 30 chr3 43144228 43144425 -174892733 - L2 LINE L2 0 3313 3102 27 49 0 0 chr3 43144819 43144860 -174892298 + AT_rich Low_complexity Low_complexity 1 41 0 2079 45 8 0 chr3 43144945 43145211 -174891947 + L1PA4 LINE L1 5886 6153 -2 307 259 24 12 chr3 43146224 43146309 -174890849 - MIR SINE MIR -106 156 71 243 0 0 0 chr3 43150705 43150732 -174886426 + (TG)n Simple_repeat Simple_repeat 2 28 0 1699 190 49 0 chr3 43150881 43151207 -174885951 - MER2 DNA MER2_type -1 343 2 211 254 78 109 chr3 43151272 43151465 -174885693 - L2 LINE L2 -22 3291 3105 336 341 56 62 chr3 43151576 43151913 -174885245 - L2 LINE L2 -423 2891 2557 360 0 0 0 chr3 43152246 43152286 -174884872 + (TG)n Simple_repeat Simple_repeat 1 40 0 356 287 28 37 chr3 43153049 43153157 -174884001 + MIR SINE MIR 23 129 -133 1019 185 0 0 chr3 43153175 43153332 -174883826 - AluJ SINE Alu -23 289 133 300 110 14 123 chr3 43153332 43153405 -174883753 + L1M4 LINE L1 4216 4280 -1866 558 158 0 11 chr3 43153444 43153539 -174883619 - AluJ SINE Alu -180 132 39 301 304 44 37 chr3 43153541 43153676 -174883482 + MIR SINE MIR 117 252 -10 807 91 0 4 chr3 43153898 43154124 -174883034 + AluY SINE Alu 19 339 0 747 260 109 27 chr3 43154128 43154570 -174882588 - L1MC4 LINE L1 -60 7982 7505 900 176 14 56 chr3 43155186 43155402 -174881756 + MER3 DNA MER1_type 1 207 -2 319 339 122 17 chr3 43155968 43156148 -174881010 - MIR SINE MIR -33 229 31 309 26 0 0 chr3 43156267 43156305 -174880853 + (CA)n Simple_repeat Simple_repeat 1 38 0 1232 160 28 12 chr3 43156544 43156794 -174880364 - L1MB3 LINE L1 0 6183 5930 393 22 0 0 chr3 43156910 43156956 -174880202 + (TG)n Simple_repeat Simple_repeat 2 47 0 611 213 24 16 chr3 43158206 43158333 -174878825 + FLAM_A SINE Alu 1 128 -5 325 277 107 13 chr3 43159048 43159207 -174877951 - HAL1 LINE L1 -845 1662 1489 198 0 0 0 chr3 43159394 43159416 -174877742 + (T)n Simple_repeat Simple_repeat 1 22 0 22 35 0 0 chr3 43159534 43159563 -174877595 + AT_rich Low_complexity Low_complexity 1 29 0 678 275 82 46 chr3 43159967 43160272 -174876886 + LTR16C LTR ERVL 176 491 0 236 318 62 55 chr3 43161018 43161153 -174876005 + MIR SINE MIR 1 148 -60 186 167 0 0 chr3 43163811 43163847 -174873311 + CT-rich Low_complexity Low_complexity 4 39 0 2032 172 89 5 chr3 43163894 43164289 -174872869 - MSTA LTR MaLR 0 428 1 1717 264 133 60 chr3 43164494 43164557 -174872601 - L1MC4 LINE L1 0 8042 7985 7477 38 0 0 chr3 43164557 43165929 -174871229 + L1PA5 LINE L1 4780 6150 -4 1717 264 133 60 chr3 43165929 43167092 -174870066 - L1MC4 LINE L1 -57 7985 6727 363 301 19 0 chr3 43167092 43167195 -174869963 + MER58C DNA MER1_type 1 105 -110 377 242 0 33 chr3 43167259 43167350 -174869808 + MER58C DNA MER1_type 124 211 -4 359 304 108 14 chr3 43167350 43167412 -174869746 - L1MC4a LINE L1 -1208 6600 6545 3552 134 11 11 chr3 43167412 43167978 -174869180 + L1PA16 LINE L1 5593 6158 -8 359 304 108 14 chr3 43167978 43168209 -174868949 - L1MC4a LINE L1 -1263 6545 6400 453 279 145 28 chr3 43168267 43168694 -174868464 - L1MC4a LINE L1 -1384 6424 5948 26 0 0 0 chr3 43168764 43168790 -174868368 + AT_rich Low_complexity Low_complexity 1 26 0 1618 260 52 48 chr3 43168804 43169455 -174867703 - L1MC4a LINE L1 -1854 5954 5301 374 279 51 10 chr3 43169940 43170120 -174867038 + L1M4 LINE L1 5223 5411 -744 1931 187 93 35 chr3 43170123 43170605 -174866553 - MER67D LTR ERV1 -4 510 1 1390 242 88 92 chr3 43171840 43172279 -174864879 - L1ME3A LINE L1 -20 6150 5711 2161 104 27 3 chr3 43172279 43172578 -174864580 + AluSg SINE Alu 1 306 -4 1390 242 88 92 chr3 43172578 43172593 -174864565 - L1ME3A LINE L1 -459 5711 5697 3927 136 8 3 chr3 43172593 43173224 -174863934 - MER41B LTR ERV1 -1 634 1 1390 242 88 92 chr3 43173224 43173504 -174863654 - L1ME3A LINE L1 -473 5697 5416 1578 192 137 47 chr3 43173504 43173972 -174863186 + MER67D LTR ERV1 1 510 -4 1390 242 88 92 chr3 43173972 43174071 -174863087 - L1ME3A LINE L1 -754 5416 5318 26 0 0 0 chr3 43174077 43174103 -174863055 + AT_rich Low_complexity Low_complexity 1 26 0 1037 284 93 38 chr3 43174138 43175039 -174862119 - L1ME3A LINE L1 -1239 4907 3957 327 206 101 85 chr3 43176376 43176565 -174860593 + MER112 DNA MER1_type 68 259 -1 336 384 31 0 chr3 43176982 43177141 -174860017 - MIR SINE MIR -93 169 6 339 243 20 40 chr3 43177755 43177903 -174859255 - L1MC4a LINE L1 -1008 5138 4994 772 146 30 0 chr3 43177966 43178130 -174859028 + CT-rich Low_complexity Low_complexity 1 169 0 24 0 0 0 chr3 43178434 43178458 -174858700 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr3 43178983 43179018 -174858140 + AT_rich Low_complexity Low_complexity 1 35 0 34 0 0 0 chr3 43179573 43179607 -174857551 + AT_rich Low_complexity Low_complexity 1 34 0 471 305 192 32 chr3 43181910 43182467 -174854691 + L2 LINE L2 1706 2351 -963 717 175 0 29 chr3 43182474 43182611 -174854547 - MLT1A2 LTR MaLR -241 133 1 184 313 0 45 chr3 43182954 43183021 -174854137 - MIR SINE MIR -109 153 90 187 218 23 81 chr3 43183115 43183202 -174853956 + L2 LINE L2 733 814 -2500 254 275 72 0 chr3 43183245 43183314 -174853844 + MIR SINE MIR 78 151 -111 26 64 0 0 chr3 43183939 43183986 -174853172 + AT_rich Low_complexity Low_complexity 1 47 0 202 326 236 0 chr3 43184845 43184989 -174852169 - MIR SINE MIR -13 249 72 329 305 55 8 chr3 43185228 43185356 -174851802 + MIR SINE MIR 29 162 -100 466 285 29 7 chr3 43185780 43185917 -174851241 - MIR SINE MIR -121 141 2 328 330 46 0 chr3 43185984 43186093 -174851065 - MIR SINE MIR -67 195 82 1752 230 127 19 chr3 43186232 43186706 -174850452 + MLT1H LTR MaLR 4 528 -21 428 77 15 0 chr3 43187088 43187153 -174850005 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 819 311 81 84 chr3 43187737 43188853 -174848305 - ERVL LTR ERVL -956 4808 3697 1049 220 0 22 chr3 43188902 43189125 -174848033 - MER20 DNA MER1_type -1 218 1 244 211 28 28 chr3 43189134 43189205 -174847953 - MER94 DNA DNA 0 134 64 1287 326 66 40 chr3 43189252 43189969 -174847189 - ERVL LTR ERVL -2118 3646 2912 1645 351 40 7 chr3 43190185 43191025 -174846133 - ERVL LTR ERVL -3108 2656 1789 16255 200 28 10 chr3 43191280 43196726 -174840432 - L1PA15 LINE L1 -20 6796 1243 206 269 0 0 chr3 43198355 43198407 -174838751 - MIR SINE MIR -49 213 162 239 296 112 26 chr3 43198814 43198930 -174838228 - MIR SINE MIR -60 148 30 220 196 0 54 chr3 43199203 43199259 -174837899 + CT-rich Low_complexity Low_complexity 2 54 0 580 206 83 21 chr3 43199766 43199950 -174837208 - MER39 LTR ERV1 -495 158 6 1034 298 76 39 chr3 43200105 43200515 -174836643 - MLT1J1 LTR MaLR -21 425 1 197 325 132 0 chr3 43201265 43201379 -174835779 - MIR3 SINE MIR -38 170 42 3956 146 8 51 chr3 43201882 43202083 -174835075 + L1MB2 LINE L1 5420 5628 -543 2111 136 120 8 chr3 43202083 43202466 -174834692 + MSTA LTR MaLR 3 428 0 3956 146 8 51 chr3 43202466 43203043 -174834115 + L1MB2 LINE L1 5628 6164 -7 223 213 66 0 chr3 43203296 43203357 -174833801 - MIR SINE MIR -55 207 143 568 290 29 51 chr3 43203855 43204131 -174833027 - L1ME1 LINE L1 -6 6160 5891 1100 258 60 8 chr3 43204138 43204507 -174832651 + L1ME1 LINE L1 2383 2770 -3376 4741 262 58 30 chr3 43204569 43207204 -174829954 + L1ME1 LINE L1 3401 6115 -51 21 36 0 0 chr3 43207231 43207259 -174829899 + AT_rich Low_complexity Low_complexity 1 28 0 1546 206 143 102 chr3 43207471 43208225 -174828933 + LTR1B LTR ERV1 1 826 0 783 246 75 39 chr3 43209545 43209826 -174827332 + LTR16A1 LTR ERVL 27 317 -140 1913 239 72 17 chr3 43209828 43210247 -174826911 + MLT2B1 LTR ERVL 1 442 -78 246 105 0 0 chr3 43210348 43210386 -174826772 + (CA)n Simple_repeat Simple_repeat 1 38 0 195 42 0 0 chr3 43210447 43210471 -174826687 + (TTCTC)n Simple_repeat Simple_repeat 4 27 0 271 243 0 27 chr3 43210477 43210551 -174826607 + LTR16A1 LTR ERVL 373 444 -13 202 261 0 14 chr3 43210644 43210713 -174826445 + CT-rich Low_complexity Low_complexity 1 68 0 24 0 0 0 chr3 43210890 43210914 -174826244 + AT_rich Low_complexity Low_complexity 1 24 0 5279 189 26 22 chr3 43210917 43212689 -174824469 - L1PA16 LINE L1 -11 6155 4381 1852 142 4 11 chr3 43212689 43212970 -174824188 - AluSx SINE Alu -33 279 1 5279 189 26 22 chr3 43212970 43213285 -174823873 - L1PA16 LINE L1 -1785 4381 4069 2191 96 0 7 chr3 43214249 43214531 -174822627 + AluSq SINE Alu 11 290 -23 382 248 145 55 chr3 43215155 43215466 -174821692 + LTR16C LTR ERVL 153 491 0 363 274 103 29 chr3 43215503 43215678 -174821480 + LTR16C LTR ERVL 301 488 -3 1707 176 24 0 chr3 43215806 43216095 -174821063 + AluJb SINE Alu 3 298 -14 2206 125 0 0 chr3 43216657 43216979 -174820179 + AluSx SINE Alu 1 322 0 870 221 9 28 chr3 43217382 43217599 -174819559 + L1ME3A LINE L1 5956 6168 -2 338 260 161 37 chr3 43217602 43217875 -174819283 + L1M4 LINE L1 5015 5321 -825 857 251 107 78 chr3 43217877 43218011 -174819147 + MLT1H LTR MaLR 87 216 -333 2140 103 4 4 chr3 43218011 43218319 -174818839 - AluSc SINE Alu 0 308 1 857 251 107 78 chr3 43218319 43218633 -174818525 + MLT1H LTR MaLR 216 549 0 324 0 0 0 chr3 43218688 43218724 -174818434 + (CA)n Simple_repeat Simple_repeat 1 36 0 1696 279 66 10 chr3 43220211 43220695 -174816463 + MLT1H LTR MaLR 3 513 -36 4249 66 2 25 chr3 43220695 43221286 -174815872 + L1PA8A LINE L1 5306 5882 -249 2691 194 24 26 chr3 43221284 43221948 -174815210 - L1 LINE L1 -814 5514 4852 * 6458 207 40 19 chr3 43221943 43221967 -174815191 - L1 LINE L1 -3572 2756 2734 2393 125 11 0 chr3 43221967 43222318 -174814840 - THE1A LTR MaLR 0 355 1 6458 207 40 19 chr3 43222318 43224992 -174812166 - L1 LINE L1 -3594 2734 3 2543 249 85 4 chr3 43224993 43225760 -174811398 - L1M4 LINE L1 -943 5701 4873 * 4742 238 101 23 chr3 43225751 43228727 -174808431 - L1M4 LINE L1 -2134 4510 1307 324 141 0 47 chr3 43228740 43228868 -174808290 + (TA)n Simple_repeat Simple_repeat 1 122 0 1389 254 82 87 chr3 43228873 43229363 -174807795 - L1M4 LINE L1 -5330 1212 721 216 0 0 0 chr3 43229363 43229387 -174807771 + (TA)n Simple_repeat Simple_repeat 2 25 0 1389 254 82 87 chr3 43229387 43230165 -174806993 - L1M4 LINE L1 -5821 721 1 229 241 48 12 chr3 43230224 43230307 -174806851 - L1P5 LINE L1 -705 5451 5366 390 288 97 44 chr3 43230317 43230543 -174806615 - L1M4 LINE L1 -832 5314 5077 48 60 0 0 chr3 43230564 43230647 -174806511 + AT_rich Low_complexity Low_complexity 1 83 0 202 172 17 17 chr3 43231017 43231075 -174806083 + (TTTAA)n Simple_repeat Simple_repeat 2 59 0 193 132 19 19 chr3 43231110 43231163 -174805995 + (TA)n Simple_repeat Simple_repeat 1 53 0 443 337 139 5 chr3 43233125 43233327 -174803831 + MIR SINE MIR 21 249 -13 621 320 79 8 chr3 43233647 43234153 -174803005 + L1MC4a LINE L1 4070 4611 -1535 24 0 0 0 chr3 43234636 43234660 -174802498 + AT_rich Low_complexity Low_complexity 1 24 0 342 318 112 14 chr3 43234750 43235173 -174801985 + L1MC4a LINE L1 5424 5657 -464 5240 209 25 24 chr3 43235341 43237000 -174800158 - L1MC1 LINE L1 0 6333 4678 1964 177 7 47 chr3 43237000 43237406 -174799752 - MLT1B LTR MaLR 0 390 1 5240 209 25 24 chr3 43237406 43237449 -174799709 - L1MC1 LINE L1 -1655 4678 4637 2286 142 15 88 chr3 43237449 43237810 -174799348 + Tigger2a DNA MER2_type 1 322 -2386 1864 141 18 0 chr3 43237810 43238093 -174799065 + AluSx SINE Alu 1 288 -24 2286 142 15 88 chr3 43238093 43238197 -174798961 + Tigger2a DNA MER2_type 322 432 -2 5240 209 25 24 chr3 43238197 43238533 -174798625 - L1MC1 LINE L1 -1696 4637 4302 1477 179 40 86 chr3 43238533 43238710 -174798448 + MLT1B LTR MaLR 1 156 -234 2030 137 13 0 chr3 43238710 43239017 -174798141 - AluSx SINE Alu -1 311 1 1477 179 40 86 chr3 43239017 43239188 -174797970 + MLT1B LTR MaLR 156 333 -57 4515 147 16 17 chr3 43239188 43239959 -174797199 - LTR1 LTR ERV1 0 785 16 359 153 0 0 chr3 43239957 43240016 -174797142 + MLT1B LTR MaLR 330 388 -2 * 2911 147 10 19 chr3 43242140 43242622 -174794536 - MER66A LTR ERV1 0 478 1 577 325 57 29 chr3 43243947 43244227 -174792931 + L2 LINE L2 2596 2883 -431 1187 335 32 3 chr3 43244237 43244613 -174792545 + LTR16C LTR ERVL 4 390 -101 3472 51 0 7 chr3 43244615 43245066 -174792092 - LTR7 LTR ERV1 -2 448 1 2396 84 47 16 chr3 43245066 43245446 -174791712 - HERVH LTR ERV1 0 7713 7322 1304 129 20 0 chr3 43245444 43245645 -174791513 - HERVH LTR ERV1 -1894 5819 5615 * 2570 163 0 0 chr3 43245679 43246090 -174791068 - HERVH LTR ERV1 -2564 5149 4739 925 162 0 7 chr3 43246088 43246242 -174790916 - HERVH LTR ERV1 -4069 3644 3492 * 899 122 27 0 chr3 43246232 43246379 -174790779 - HERVH LTR ERV1 -4423 3290 3140 * 1650 131 0 25 chr3 43246358 43246641 -174790517 - HERVH LTR ERV1 -4718 2995 2720 286 289 13 0 chr3 43246642 43246718 -174790440 + LTR16C LTR ERVL 415 491 0 21 0 0 0 chr3 43246942 43246963 -174790195 + AT_rich Low_complexity Low_complexity 1 21 0 28 95 0 0 chr3 43247266 43247350 -174789808 + AT_rich Low_complexity Low_complexity 1 84 0 1084 274 26 39 chr3 43247394 43247851 -174789307 + L1MD2 LINE L1 3171 3621 -2525 483 115 164 8 chr3 43247824 43247946 -174789212 + L1MDa LINE L1 2451 2591 -3949 * 1651 253 25 20 chr3 43247943 43248496 -174788662 + L1MD2 LINE L1 4275 4830 -1710 901 269 97 7 chr3 43248592 43248901 -174788257 + MER2 DNA MER2_type 9 345 0 3261 230 87 34 chr3 43248901 43249391 -174787767 + L1MD2 LINE L1 4833 5295 -1458 270 0 0 0 chr3 43249391 43249421 -174787737 + (CAA)n Simple_repeat Simple_repeat 1 30 0 3261 230 87 34 chr3 43249421 43250068 -174787090 + L1MD2 LINE L1 5295 5906 -847 869 166 6 6 chr3 43250068 43250237 -174786921 + L1MA10 LINE L1 6163 6331 -3 3261 230 87 34 chr3 43250237 43250899 -174786259 + L1MD2 LINE L1 5906 6734 -19 1633 205 3 0 chr3 43251148 43251441 -174785717 - AluJo SINE Alu -14 298 5 47 44 0 0 chr3 43251662 43251730 -174785428 + AT_rich Low_complexity Low_complexity 1 68 0 23 0 0 0 chr3 43251765 43251788 -174785370 + AT_rich Low_complexity Low_complexity 1 23 0 254 315 139 12 chr3 43253076 43253241 -174783917 - MIR SINE MIR 0 262 77 253 281 94 31 chr3 43253523 43253619 -174783539 + L2 LINE L2 3203 3304 -9 186 290 130 0 chr3 43254165 43254234 -174782924 - MIR3 SINE MIR 0 208 131 1127 148 23 0 chr3 43254762 43254979 -174782179 - L1MA4 LINE L1 -5 6295 6074 331 274 55 14 chr3 43255303 43255449 -174781709 - L1ME3A LINE L1 -20 6150 5999 226 328 0 0 chr3 43256496 43256557 -174780601 + CT-rich Low_complexity Low_complexity 3 63 0 195 203 0 0 chr3 43256965 43257024 -174780134 + (TA)n Simple_repeat Simple_repeat 1 59 0 7959 10 0 0 chr3 43257026 43258185 -174778973 - L1HS LINE L1 -2 6153 4995 * 22448 23 0 0 chr3 43258182 43260849 -174776309 + L1HS LINE L1 2314 4980 -1166 181 164 18 18 chr3 43261227 43261282 -174775876 + (TA)n Simple_repeat Simple_repeat 1 55 0 21 36 0 0 chr3 43261306 43261334 -174775824 + AT_rich Low_complexity Low_complexity 1 28 0 585 254 83 16 chr3 43261396 43261589 -174775569 + MIR SINE MIR 55 260 -2 246 242 22 55 chr3 43261629 43261720 -174775438 - L1ME3A LINE L1 -2306 5502 5415 3292 135 2 38 chr3 43261791 43262368 -174774790 - L1PA15 LINE L1 -6 6159 5604 22 35 0 0 chr3 43262454 43262483 -174774675 + AT_rich Low_complexity Low_complexity 1 29 0 289 306 112 15 chr3 43262708 43262914 -174774244 + L1MC/D LINE L1 5598 5823 -1985 1493 144 125 13 chr3 43263025 43263330 -174773828 - MER44D DNA MER2_type 0 609 1 594 311 170 45 chr3 43263527 43264033 -174773125 - L1ME3A LINE L1 -1162 4984 4543 1874 163 3 7 chr3 43264033 43264334 -174772824 - AluSx SINE Alu -11 301 2 594 311 170 45 chr3 43264334 43264644 -174772514 - L1ME3A LINE L1 -1603 4543 4066 2268 72 14 0 chr3 43264658 43264950 -174772208 - AluY SINE Alu -15 296 1 459 211 44 44 chr3 43265158 43265272 -174771886 + FLAM_C SINE Alu 13 126 -17 422 274 54 62 chr3 43266122 43266363 -174770795 - L2 LINE L2 -2 3311 3073 397 361 72 6 chr3 43266620 43266800 -174770358 - MIR3 SINE MIR -7 201 10 188 352 9 9 chr3 43266900 43267005 -174770153 - MIR SINE MIR -10 252 148 3695 186 53 3 chr3 43267324 43268065 -174769093 - L1MC2 LINE L1 -22 6322 5545 367 345 94 23 chr3 43268062 43268497 -174768661 - L1ME LINE L1 -348 5822 5357 * 520 267 131 10 chr3 43268561 43268767 -174768391 - MIR SINE MIR 0 262 32 1906 156 29 73 chr3 43269311 43269679 -174767479 - L1MA6 LINE L1 -6 6294 5944 2032 124 3 0 chr3 43269679 43269962 -174767196 - AluSx SINE Alu -28 284 1 1906 156 29 73 chr3 43269962 43270004 -174767154 - L1MA6 LINE L1 -356 5944 5902 234 319 34 34 chr3 43269999 43270203 -174766955 - L1ME LINE L1 -1460 4686 4483 * 1848 137 14 73 chr3 43270325 43270682 -174766476 - MER1B DNA MER1_type 0 337 2 180 0 0 0 chr3 43270990 43271010 -174766148 + (TG)n Simple_repeat Simple_repeat 2 21 0 937 153 0 7 chr3 43271187 43271337 -174765821 - L1M1 LINE L1 -6634 931 783 3227 190 82 9 chr3 43271411 43272295 -174764863 - L1M LINE L1 -745 5401 4472 19223 172 56 22 chr3 43272298 43274874 -174762284 + L1M1 LINE L1 13 2500 -5065 2074 96 24 20 chr3 43274874 43275167 -174761991 + AluSg1 SINE Alu 1 294 -15 19223 172 56 22 chr3 43275167 43276290 -174760868 + L1M1 LINE L1 2500 3583 -3982 2122 132 0 0 chr3 43276290 43276593 -174760565 + AluSq SINE Alu 10 312 -1 19223 172 56 22 chr3 43276593 43278375 -174758783 + L1M1 LINE L1 3583 5688 -1877 2290 86 0 3 chr3 43278379 43278682 -174758476 + AluY SINE Alu 1 302 -9 5754 90 32 6 chr3 43278700 43279545 -174757613 + L1MA1 LINE L1 5432 6298 -4 961 260 124 49 chr3 43280529 43280995 -174756163 + MLT1H LTR MaLR 9 509 -40 25 31 0 0 chr3 43281248 43281280 -174755878 + AT_rich Low_complexity Low_complexity 1 32 0 301 226 81 65 chr3 43281352 43281476 -174755682 - L1ME4a LINE L1 -5 6116 5991 198 118 0 0 chr3 43281615 43281649 -174755509 + (CA)n Simple_repeat Simple_repeat 1 34 0 180 152 0 0 chr3 43282701 43282734 -174754424 + GA-rich Low_complexity Low_complexity 3 35 0 377 316 60 0 chr3 43282758 43282926 -174754232 + Charlie8 DNA MER1_type 100 277 -2140 651 213 143 71 chr3 43283321 43283712 -174753446 + LTR30 LTR ERV1 238 587 -9 21276 276 32 35 chr3 43283723 43290339 -174746819 + HERV3 LTR ERV1 1 6594 -1832 631 260 95 38 chr3 43290782 43291185 -174745973 + LTR30 LTR ERV1 112 493 0 736 182 16 0 chr3 43291227 43291348 -174745810 + FLAM_A SINE Alu 1 123 -10 826 233 33 38 chr3 43291657 43291867 -174745291 - MER63A DNA MER1_type 0 210 2 461 270 147 21 chr3 43291988 43292310 -174744848 + MLT1G LTR MaLR 170 588 -2 1255 281 41 20 chr3 43293195 43293962 -174743196 - L1ME LINE L1 -669 5497 4719 370 165 44 11 chr3 43294005 43294096 -174743062 - L1MA6 LINE L1 0 6300 6207 447 180 46 1 chr3 43294096 43294193 -174742965 + L1MA6 LINE L1 5986 6085 -215 202 70 0 47 chr3 43294261 43294304 -174742854 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 855 71 0 0 chr3 43294306 43294418 -174742740 - L1PB1 LINE L1 -13 6138 6027 1209 140 145 4 chr3 43294450 43294685 -174742473 + MLT1B LTR MaLR 123 390 0 210 279 241 0 chr3 43295152 43295231 -174741927 - MER5A DNA MER1_type -83 106 9 351 0 0 0 chr3 43295612 43295651 -174741507 + (TA)n Simple_repeat Simple_repeat 2 40 0 200 135 0 19 chr3 43296020 43296072 -174741086 + (TA)n Simple_repeat Simple_repeat 2 52 0 1161 232 23 68 chr3 43296097 43296451 -174740707 + MLT1A2 LTR MaLR 37 374 0 2546 230 85 0 chr3 43296451 43297051 -174740107 + MLT1A2-int LTR MaLR 1 651 -1084 495 153 46 69 chr3 43297081 43297212 -174739946 + MLT1B LTR MaLR 229 356 -34 1171 191 80 78 chr3 43297614 43298001 -174739157 + MLT1B LTR MaLR 1 388 -2 435 178 22 49 chr3 43298527 43298712 -174738446 + CT-rich Low_complexity Low_complexity 1 180 0 2367 96 3 0 chr3 43298714 43299016 -174738142 - AluSp SINE Alu -7 306 4 203 179 0 0 chr3 43299032 43299071 -174738087 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 213 211 0 19 chr3 43299461 43299513 -174737645 + CT-rich Low_complexity Low_complexity 2 52 0 330 294 106 17 chr3 43299910 43300090 -174737068 - MIR SINE MIR -32 230 35 641 275 109 22 chr3 43300253 43300482 -174736676 - MIR SINE MIR -13 249 1 1998 124 0 27 chr3 43300596 43300895 -174736263 - AluSx SINE Alu -16 296 6 545 227 40 0 chr3 43301530 43301680 -174735478 - MER3 DNA MER1_type -87 122 14 608 354 48 15 chr3 43301827 43302163 -174734995 + MLT1I LTR MaLR 63 409 0 1674 247 21 5 chr3 43303268 43303984 -174733174 + L1M4c LINE L1 2097 2825 -3557 316 125 0 0 chr3 43303993 43304041 -174733117 - L1P LINE L1 -796 5367 5320 4560 124 48 3 chr3 43304043 43304795 -174732363 + L1PA13 LINE L1 5374 6159 -4 290 173 13 27 chr3 43304810 43304885 -174732273 + L1M4c LINE L1 2811 2884 -3498 1952 155 33 41 chr3 43304885 43305252 -174731906 - THE1B LTR MaLR 0 364 1 10662 103 10 42 chr3 43305252 43305313 -174731845 - THE1B-int LTR MaLR 0 1580 1519 268 125 0 0 chr3 43305313 43305353 -174731805 + tRNA-Gly-GGA tRNA tRNA 1 40 -35 10662 103 10 42 chr3 43305353 43306441 -174730717 - THE1B-int LTR MaLR -61 1519 454 2108 144 0 3 chr3 43306441 43306754 -174730404 - AluSp SINE Alu -1 312 1 10662 103 10 42 chr3 43306754 43307195 -174729963 - THE1B-int LTR MaLR -1126 454 1 1724 161 38 52 chr3 43307197 43307564 -174729594 - THE1B LTR MaLR -2 362 1 687 152 0 198 chr3 43307564 43307827 -174729331 + L1M4c LINE L1 2880 3090 -3292 183 218 0 0 chr3 43307907 43307962 -174729196 + (TA)n Simple_repeat Simple_repeat 1 55 0 27 0 0 0 chr3 43307962 43307989 -174729169 + AT_rich Low_complexity Low_complexity 1 27 0 485 97 79 0 chr3 43307992 43308157 -174729001 + (TA)n Simple_repeat Simple_repeat 1 178 0 212 96 77 0 chr3 43308159 43308211 -174728947 + (TATAA)n Simple_repeat Simple_repeat 5 60 0 593 144 27 10 chr3 43308213 43308517 -174728641 + (TA)n Simple_repeat Simple_repeat 1 309 0 307 277 27 45 chr3 43308519 43308631 -174728527 - L1MC4 LINE L1 -1340 6702 6593 579 95 66 5 chr3 43308638 43309048 -174728110 + (TA)n Simple_repeat Simple_repeat 1 435 0 306 241 0 38 chr3 43309480 43309559 -174727599 - MER58C DNA MER1_type -16 199 124 363 301 19 0 chr3 43309624 43309727 -174727431 - MER58C DNA MER1_type -110 105 1 1590 267 139 56 chr3 43309727 43310879 -174726279 + L1MC4 LINE L1 6727 7974 -68 7424 39 0 0 chr3 43310890 43312011 -174725147 - L1PA5 LINE L1 -4 6150 5031 288 133 0 0 chr3 43312123 43312183 -174724975 + (C)n Simple_repeat Simple_repeat 1 60 0 212 344 8 16 chr3 43312227 43312355 -174724803 + CT-rich Low_complexity Low_complexity 2 128 0 856 299 134 43 chr3 43312941 43313693 -174723465 - L1M4 LINE L1 -5721 821 1 364 290 81 54 chr3 43313849 43314070 -174723088 - L1M4 LINE L1 -843 5303 5077 48 60 0 0 chr3 43314091 43314174 -174722984 + AT_rich Low_complexity Low_complexity 1 83 0 43 75 0 0 chr3 43314501 43314581 -174722577 + GC_rich Low_complexity Low_complexity 1 80 0 388 206 27 54 chr3 43314581 43314765 -174722393 + (CCCCG)n Simple_repeat Simple_repeat 1 179 0 23 87 0 0 chr3 43314787 43314833 -174722325 + GC_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr3 43315532 43315564 -174721594 + AT_rich Low_complexity Low_complexity 1 32 0 229 220 0 17 chr3 43315650 43315709 -174721449 - tRNA-Lys-AAA tRNA tRNA -13 63 6 383 218 129 68 chr3 43316602 43316792 -174720366 - AluSg SINE Alu -197 103 2 421 127 66 0 chr3 43317208 43317374 -174719784 + (TA)n Simple_repeat Simple_repeat 1 177 0 81 0 0 0 chr3 43317374 43317455 -174719703 + AT_rich Low_complexity Low_complexity 1 81 0 638 116 64 2 chr3 43317455 43317992 -174719166 + (TA)n Simple_repeat Simple_repeat 1 570 0 21 0 0 0 chr3 43318327 43318348 -174718810 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr3 43318946 43318977 -174718181 + AT_rich Low_complexity Low_complexity 1 31 0 5153 118 85 0 chr3 43319318 43320507 -174716651 + L1PA11 LINE L1 4917 6174 0 399 307 127 36 chr3 43320716 43321048 -174716110 + MLT1J1 LTR MaLR 11 372 -74 2085 141 0 0 chr3 43321105 43321411 -174715747 - AluSx SINE Alu -6 306 1 298 352 56 50 chr3 43321489 43321969 -174715189 - L2 LINE L2 -882 2432 1950 427 246 132 0 chr3 43322002 43322116 -174715042 - MER94 DNA DNA -5 129 1 352 390 60 39 chr3 43323843 43323926 -174713232 + L2 LINE L2 2368 2448 -866 1973 95 4 4 chr3 43323926 43324199 -174712959 + AluSc SINE Alu 1 273 -36 321 26 0 0 chr3 43324199 43324237 -174712921 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 352 390 60 39 chr3 43324237 43324503 -174712655 + L2 LINE L2 2448 2729 -585 2307 94 0 3 chr3 43324503 43324810 -174712348 - AluSc SINE Alu -3 306 1 352 390 60 39 chr3 43324810 43324843 -174712315 + L2 LINE L2 2729 2760 -554 1475 234 116 46 chr3 43324855 43325373 -174711785 + MLT2B3 LTR ERVL 1 554 0 1641 144 89 0 chr3 43325455 43325725 -174711433 - AluSx SINE Alu -18 294 1 279 371 153 33 chr3 43325770 43326045 -174711113 + L2 LINE L2 3006 3313 0 183 170 21 106 chr3 43326403 43326450 -174710708 - MIR SINE MIR -150 112 70 622 229 201 6 chr3 43326980 43327159 -174709999 + MER20 DNA MER1_type 1 214 -5 249 254 48 0 chr3 43327213 43327276 -174709882 + MIR SINE MIR 66 131 -131 2202 135 25 28 chr3 43328516 43328916 -174708242 - LTR23 LTR ERV1 -38 399 1 618 245 14 0 chr3 43328916 43329063 -174708095 - LTR23-int LTR ERV1 0 5123 4975 215 303 0 13 chr3 43329147 43329223 -174707935 - L2 LINE L2 -1081 2233 2159 202 211 26 0 chr3 43329291 43329329 -174707829 - L2 LINE L2 -13 3300 3262 236 328 64 35 chr3 43329425 43329596 -174707562 - MIR SINE MIR -86 176 1 227 333 106 0 chr3 43329972 43330161 -174706997 - HAL1 LINE L1 -869 1638 1430 * 388 30 30 25 chr3 43330141 43330207 -174706951 - L1PA13 LINE L1 -83 6078 6018 652 85 0 0 chr3 43330209 43330303 -174706855 + L1PA13 LINE L1 6067 6160 -3 343 335 37 50 chr3 43330448 43330690 -174706468 - HAL1 LINE L1 -1232 1275 1037 275 268 119 55 chr3 43331305 43331615 -174705543 + L1M4 LINE L1 4518 4847 -1299 1994 149 37 16 chr3 43332694 43333070 -174704088 - L1MA3 LINE L1 -1 6304 5921 795 260 12 6 chr3 43334129 43334298 -174702860 + MER45A DNA AcHobo 9 178 0 345 295 52 24 chr3 43336168 43336312 -174700846 + MIR SINE MIR 20 163 -45 441 390 56 17 chr3 43336337 43336568 -174700590 + L2 LINE L2 2437 2676 -638 189 0 0 0 chr3 43337069 43337090 -174700068 + (TGAA)n Simple_repeat Simple_repeat 4 24 0 316 339 92 50 chr3 43337536 43337754 -174699404 + L2 LINE L2 3032 3258 -14 823 313 0 27 chr3 43338774 43339030 -174698128 + MIR SINE MIR 14 262 0 277 392 54 8 chr3 43339068 43339198 -174697960 + L2 LINE L2 3125 3260 -12 215 221 63 84 chr3 43339175 43339270 -174697888 - MIR3 SINE MIR -6 202 110 * 2300 110 0 0 chr3 43339625 43339924 -174697234 + AluSg SINE Alu 11 309 -1 294 299 17 34 chr3 43340127 43340244 -174696914 - MIR SINE MIR -116 146 32 610 191 107 0 chr3 43340400 43340531 -174696627 + L1MEc LINE L1 35 179 -6217 1996 225 57 64 chr3 43340535 43341296 -174695862 + L1M4 LINE L1 3949 4703 -1443 2154 113 0 10 chr3 43341298 43341599 -174695559 + AluSc SINE Alu 1 298 -11 629 250 140 0 chr3 43341627 43341791 -174695367 + L1PA15 LINE L1 14 200 -7381 * 1168 187 4 17 chr3 43341789 43342030 -174695128 + L1PA15 LINE L1 2828 3065 -4509 7426 191 18 13 chr3 43342040 43343155 -174694003 + L1PA15 LINE L1 5029 6156 -1428 216 0 0 0 chr3 43343155 43343179 -174693979 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 7426 191 18 13 chr3 43343179 43343650 -174693508 + L1PA15 LINE L1 6156 6623 -961 22567 171 33 32 chr3 43343658 43345693 -174691465 + L1PA10 LINE L1 35 2066 -4417 2107 132 3 7 chr3 43345693 43345996 -174691162 - AluSq SINE Alu -11 302 1 22567 171 33 32 chr3 43345996 43350282 -174686876 + L1PA10 LINE L1 2066 6446 -37 558 29 0 0 chr3 43350287 43350355 -174686803 + (TAAAA)n Simple_repeat Simple_repeat 3 70 0 5227 140 22 15 chr3 43350355 43351338 -174685820 + L1PA15 LINE L1 6615 7599 -4 1612 239 53 23 chr3 43351332 43351939 -174685219 + L1ME1 LINE L1 4695 5319 -827 * 936 169 12 12 chr3 43351951 43352117 -174685041 + FRAM SINE Alu 1 165 -11 2368 254 82 11 chr3 43352130 43352952 -174684206 + L1ME1 LINE L1 5298 6334 0 428 280 19 79 chr3 43354345 43354559 -174682599 + L2 LINE L2 3108 3308 -5 415 325 38 0 chr3 43354623 43354780 -174682378 - LTR16B LTR ERVL -301 163 1 279 224 28 149 chr3 43355440 43355502 -174681656 - L2 LINE L2 -25 3247 3202 654 135 0 0 chr3 43355502 43355606 -174681552 + L1PB4 LINE L1 6053 6156 0 279 224 28 149 chr3 43355606 43355650 -174681508 - L2 LINE L2 -70 3202 3154 315 292 182 24 chr3 43355794 43356003 -174681155 + MIR SINE MIR 1 242 -20 427 341 56 14 chr3 43356863 43357077 -174680081 - MER90 LTR ERV1 -202 412 190 200 330 59 17 chr3 43357382 43357500 -174679658 + L2 LINE L2 2658 2780 -534 282 318 37 28 chr3 43359021 43359128 -174678030 + L2 LINE L2 2651 2758 -556 311 206 500 0 chr3 43359432 43359558 -174677600 - MER5A DNA MER1_type 0 189 1 199 333 0 0 chr3 43359788 43359857 -174677301 + MIR SINE MIR 150 218 -44 315 244 15 82 chr3 43360431 43360566 -174676592 - LTR16C LTR ERVL 0 491 366 2408 79 0 7 chr3 43360619 43360923 -174676235 - AluY SINE Alu -8 303 2 214 303 185 17 chr3 43361215 43361393 -174675765 - MIR SINE MIR -51 211 4 21 71 0 0 chr3 43361717 43361759 -174675399 + AT_rich Low_complexity Low_complexity 1 42 0 11049 216 66 29 chr3 43362045 43365469 -174671689 + L1PA16 LINE L1 2009 5604 -562 183 42 0 0 chr3 43365469 43365493 -174671665 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 11049 216 66 29 chr3 43365493 43366078 -174671080 + L1PA16 LINE L1 5604 6166 0 225 281 0 18 chr3 43366308 43366365 -174670793 - MLT2F LTR ERVL -502 161 106 1851 191 0 9 chr3 43366850 43367165 -174669993 + AluJo SINE Alu 1 312 0 24 53 0 0 chr3 43367817 43367855 -174669303 + AT_rich Low_complexity Low_complexity 1 38 0 2804 10 0 3 chr3 43367893 43368203 -174668955 - AluYa5 SINE Alu -2 309 1 773 305 72 72 chr3 43369139 43369641 -174667517 - MLT1J LTR MaLR -9 502 1 470 235 33 33 chr3 43369845 43370028 -174667130 + HAL1b LINE L1 665 847 -501 18151 191 85 31 chr3 43370818 43375947 -174661211 + L1P3 LINE L1 5 5426 -1035 692 92 0 0 chr3 43375955 43376042 -174661116 + L1PA4 LINE L1 12 98 -6048 * 38253 52 4 3 chr3 43376040 43381560 -174655598 + L1PA4 LINE L1 623 6163 -170 6202 103 10 0 chr3 43381560 43382614 -174654544 + L1PA10 LINE L1 5098 6164 -4 38253 52 4 3 chr3 43382614 43382786 -174654372 + L1PA4 LINE L1 6163 6333 0 26 30 0 0 chr3 43384324 43384357 -174652801 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr3 43384367 43384395 -174652763 + AT_rich Low_complexity Low_complexity 1 28 0 2009 137 35 29 chr3 43384397 43384740 -174652418 + THE1B LTR MaLR 1 345 -19 5846 122 7 9 chr3 43384740 43385592 -174651566 + THE1B-int LTR MaLR 3 852 -728 26 30 0 0 chr3 43386185 43386218 -174650940 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr3 43386228 43386256 -174650902 + AT_rich Low_complexity Low_complexity 1 28 0 1984 140 35 29 chr3 43386258 43386601 -174650557 + THE1B LTR MaLR 1 345 -19 633 85 28 19 chr3 43386601 43386707 -174650451 + THE1B-int LTR MaLR 3 109 -1471 9373 40 0 0 chr3 43388456 43389602 -174647556 + L1P LINE L1 1689 2834 -3312 260 271 9 6 chr3 43390216 43390326 -174646832 - MER5A DNA MER1_type -6 183 10 966 194 71 8 chr3 43390345 43390613 -174646545 + MER33 DNA MER1_type 4 288 -36 194 297 31 0 chr3 43390631 43390695 -174646463 - MER5A DNA MER1_type 0 189 124 723 247 41 0 chr3 43390788 43390958 -174646200 - MER5A DNA MER1_type 0 189 13 280 259 0 14 chr3 43391729 43391845 -174645313 - MER5A DNA MER1_type 0 189 10 256 294 92 98 chr3 43392840 43393024 -174644134 - L2 LINE L2 0 3272 3090 594 324 28 6 chr3 43393074 43393256 -174643902 - MIR SINE MIR -10 252 67 303 213 27 27 chr3 43393348 43393423 -174643735 - L2 LINE L2 -12 3260 3186 2298 84 3 3 chr3 43393461 43393759 -174643399 + AluSc SINE Alu 1 298 -11 180 0 0 0 chr3 43394052 43394072 -174643086 + (A)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr3 43394072 43394095 -174643063 + GC_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 43394109 43394132 -174643026 + GC_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr3 43394142 43394166 -174642992 + GC_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr3 43394180 43394206 -174642952 + GC_rich Low_complexity Low_complexity 1 26 0 1628 151 60 28 chr3 43398139 43398424 -174638734 + AluSx SINE Alu 2 295 -17 303 288 112 53 chr3 43398718 43398888 -174638270 - L2 LINE L2 -1 3312 3133 994 305 25 25 chr3 43398909 43399273 -174637885 - MLT1H LTR MaLR -2 547 184 268 236 9 9 chr3 43399907 43400013 -174637145 + (TA)n Simple_repeat Simple_repeat 1 106 0 2259 163 3 8 chr3 43400017 43400386 -174636772 + THE1C-int LTR MaLR 1086 1452 -128 944 34 62 34 chr3 43400575 43400721 -174636437 + THE1C-int LTR MaLR 1431 1580 0 2431 94 42 8 chr3 43400721 43401082 -174636076 + THE1C LTR MaLR 1 373 -2 272 236 11 0 chr3 43401083 43401172 -174635986 + (TA)n Simple_repeat Simple_repeat 2 91 0 576 278 114 0 chr3 43402537 43402713 -174634445 + MIR SINE MIR 67 262 0 303 203 29 14 chr3 43402802 43402871 -174634287 - MIR3 SINE MIR -25 183 114 21 36 0 0 chr3 43403661 43403689 -174633469 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr3 43404334 43404376 -174632782 + AT_rich Low_complexity Low_complexity 1 42 0 180 361 16 25 chr3 43404437 43404559 -174632599 + MIR3 SINE MIR 85 205 -3 237 65 0 0 chr3 43405142 43405173 -174631985 + (TTG)n Simple_repeat Simple_repeat 3 33 0 1227 192 95 32 chr3 43408472 43408810 -174628348 + MLT1A1 LTR MaLR 5 363 -2 6874 216 82 37 chr3 43408810 43410462 -174626696 + MLT1A1-int LTR MaLR 3 1729 -6 1402 162 110 55 chr3 43410467 43410813 -174626345 + MLT1A1 LTR MaLR 1 365 0 204 40 0 0 chr3 43411004 43411029 -174626129 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 401 324 71 0 chr3 43411506 43411676 -174625482 - MIR SINE MIR -6 256 75 1767 214 20 8 chr3 43411687 43412043 -174625115 - MLT1A1 LTR MaLR -5 360 1 236 207 17 17 chr3 43412899 43412957 -174624201 + CT-rich Low_complexity Low_complexity 1 58 0 924 114 0 0 chr3 43412997 43413137 -174624021 + (TTCC)n Simple_repeat Simple_repeat 3 142 0 251 120 0 40 chr3 43413137 43413187 -174623971 + (TTTTC)n Simple_repeat Simple_repeat 1 48 0 622 205 21 156 chr3 43413237 43413577 -174623581 - MER58B DNA MER1_type 0 341 45 1486 197 91 19 chr3 43413829 43414190 -174622968 - MLT1B LTR MaLR -3 387 1 954 144 39 6 chr3 43414208 43414389 -174622769 + MER96B DNA MER1_type? 49 235 -182 190 263 0 53 chr3 43414894 43414951 -174622207 - MIR SINE MIR -123 139 86 315 353 108 6 chr3 43416041 43416208 -174620950 + MIR SINE MIR 8 191 -71 363 183 158 0 chr3 43416208 43416290 -174620868 + MER69A DNA AcHobo 19 113 -64 234 288 0 0 chr3 43416640 43416699 -174620459 - L2 LINE L2 -1741 1573 1515 630 342 8 23 chr3 43416729 43416986 -174620172 - MIR SINE MIR -8 254 2 931 325 118 37 chr3 43417301 43417483 -174619675 - L2 LINE L2 -1979 1335 1169 2237 121 19 19 chr3 43417483 43417847 -174619311 - THE1B LTR MaLR 0 364 1 931 325 118 37 chr3 43417847 43418365 -174618793 - L2 LINE L2 -2145 1169 578 722 233 20 0 chr3 43418441 43418587 -174618571 + MER58A DNA MER1_type 2 150 0 302 306 99 16 chr3 43418647 43418768 -174618390 - L2 LINE L2 -2845 469 339 377 372 14 46 chr3 43419403 43419621 -174617537 - L2 LINE L2 -3029 285 75 283 204 265 0 chr3 43419639 43419737 -174617421 + MER5C DNA MER1_type 1 124 -200 211 180 18 171 chr3 43419746 43419857 -174617301 + MER5C DNA MER1_type 226 319 -5 357 140 0 0 chr3 43419901 43419958 -174617200 + L1MB5 LINE L1 6032 6088 -86 30 27 0 0 chr3 43419958 43419995 -174617163 + AT_rich Low_complexity Low_complexity 1 37 0 1925 201 8 13 chr3 43420122 43420514 -174616644 - MLT1B LTR MaLR 0 390 1 461 254 203 35 chr3 43421694 43421932 -174615226 + LTR16A LTR ERVL 126 408 -49 468 327 36 0 chr3 43422728 43422896 -174614262 + MIR SINE MIR 47 220 -42 200 327 9 80 chr3 43422979 43423092 -174614066 + MIR3 SINE MIR 93 197 -11 233 275 65 46 chr3 43423123 43423253 -174613905 - MIR SINE MIR -65 143 21 315 0 0 0 chr3 43423799 43423834 -174613324 + (T)n Simple_repeat Simple_repeat 1 35 0 360 357 46 8 chr3 43423834 43424093 -174613065 + L2 LINE L2 2752 3020 -252 360 317 79 30 chr3 43424458 43424622 -174612536 - MIR SINE MIR -71 191 20 433 316 51 55 chr3 43424673 43424926 -174612232 - MIR SINE MIR -8 254 3 180 152 0 0 chr3 43425488 43425521 -174611637 + (TAA)n Simple_repeat Simple_repeat 2 34 0 730 186 0 0 chr3 43425549 43425673 -174611485 - AluJb SINE Alu -188 124 1 199 350 29 29 chr3 43425734 43425837 -174611321 - MIR SINE MIR -63 145 63 322 317 75 19 chr3 43425978 43426139 -174611019 - MIR SINE MIR -91 171 2 435 305 80 19 chr3 43426311 43426714 -174610444 - L1 LINE L1 -2285 3861 3428 716 292 30 30 chr3 43426716 43427021 -174610137 - MLT2C1 LTR ERVL -3 394 90 37126 83 12 4 chr3 43427028 43432091 -174605067 + L1P LINE L1 7 5111 -1035 692 92 0 0 chr3 43432099 43432186 -174604972 + L1PA4 LINE L1 12 98 -6048 * 30958 50 6 3 chr3 43432184 43437698 -174599460 + L1PA4 LINE L1 623 6163 -170 6137 106 10 0 chr3 43437698 43438750 -174598408 + L1PA10 LINE L1 5098 6164 -4 30958 50 6 3 chr3 43438750 43438922 -174598236 + L1PA4 LINE L1 6163 6333 0 26 30 0 0 chr3 43440461 43440494 -174596664 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr3 43440504 43440532 -174596626 + AT_rich Low_complexity Low_complexity 1 28 0 1984 140 34 30 chr3 43440534 43440877 -174596281 + THE1B LTR MaLR 1 341 -87 10929 119 6 6 chr3 43440877 43442455 -174594703 + THE1B-int LTR MaLR 3 1580 0 1974 144 44 39 chr3 43442455 43442817 -174594341 + THE1B LTR MaLR 1 364 0 199 263 114 35 chr3 43444886 43445000 -174592158 + L2 LINE L2 3178 3300 -13 330 311 81 7 chr3 43446182 43446330 -174590828 + L3 LINE CR1 1343 1501 -76 586 260 61 22 chr3 43446407 43446588 -174590570 - L2 LINE L2 0 3313 3126 214 358 73 32 chr3 43446672 43446890 -174590268 - MIR SINE MIR 0 262 36 1815 237 7 14 chr3 43447335 43447774 -174589384 + L1ME3 LINE L1 5720 6155 -7 1744 165 0 48 chr3 43448451 43448767 -174588391 + AluJo SINE Alu 1 301 -11 1911 116 0 8 chr3 43449244 43449511 -174587647 + AluSp SINE Alu 28 292 -21 403 181 0 105 chr3 43449544 43449649 -174587509 - MER5A DNA MER1_type -95 94 1 183 348 62 54 chr3 43449742 43450001 -174587157 - L2 LINE L2 -643 2671 2411 507 284 11 74 chr3 43450387 43450438 -174586720 - MER5A DNA MER1_type -11 178 125 1955 117 0 4 chr3 43450438 43450704 -174586454 + AluSp SINE Alu 28 292 -21 507 284 11 74 chr3 43450704 43450842 -174586316 - MER5A DNA MER1_type -64 125 1 221 351 58 50 chr3 43450935 43451194 -174585964 - L2 LINE L2 -643 2671 2411 547 233 40 20 chr3 43453117 43453267 -174583891 - LTR33 LTR ERVL -258 263 111 334 296 39 48 chr3 43454156 43454386 -174582772 - L1ME3A LINE L1 -118 6121 5894 1565 168 27 0 chr3 43454607 43454863 -174582295 + AluJb SINE Alu 45 307 -5 284 279 175 0 chr3 43454866 43455020 -174582138 - L1ME3A LINE L1 -2519 5592 5412 342 292 138 26 chr3 43455087 43455594 -174581564 - L1ME3A LINE L1 -852 5363 4800 561 241 77 79 chr3 43455792 43456285 -174580873 - L1ME3A LINE L1 -2160 4055 3564 21 36 0 0 chr3 43456337 43456365 -174580793 + AT_rich Low_complexity Low_complexity 1 28 0 744 296 72 22 chr3 43456402 43456861 -174580297 - L1ME3A LINE L1 -5398 998 517 375 255 75 31 chr3 43456892 43457053 -174580105 + L1MEc LINE L1 233 400 -5996 302 313 14 21 chr3 43457037 43457181 -174579977 - L1ME3A LINE L1 -6218 178 36 * 2978 243 93 30 chr3 43457205 43457724 -174579434 - L1MC4 LINE L1 -374 7668 7183 2207 80 26 7 chr3 43457724 43458026 -174579132 - AluY SINE Alu -3 308 1 2978 243 93 30 chr3 43458026 43458640 -174578518 - L1MC4 LINE L1 -859 7183 6463 2531 232 42 42 chr3 43458902 43459488 -174577670 - L1MC3 LINE L1 -1 7784 7196 3497 144 21 38 chr3 43459488 43460101 -174577057 + LTR26 LTR ERV1 1 603 0 2531 232 42 42 chr3 43460101 43460251 -174576907 - L1MC3 LINE L1 -588 7197 7048 849 320 86 48 chr3 43460958 43461543 -174575615 - L1MEd LINE L1 -5511 608 2 205 302 87 70 chr3 43461957 43462129 -174575029 - MIR SINE MIR -4 258 84 1572 272 48 7 chr3 43463234 43463668 -174573490 + LTR16A1 LTR ERVL 6 457 0 243 350 94 19 chr3 43465552 43465712 -174571446 + MIR SINE MIR 21 192 -70 227 314 59 85 chr3 43465770 43465888 -174571270 - L2 LINE L2 -20 3252 3138 285 274 63 32 chr3 43466502 43466597 -174570561 - MIR SINE MIR -64 144 47 1340 279 139 28 chr3 43467773 43468757 -174568401 - L2 LINE L2 -1 3312 2214 2766 128 5 21 chr3 43468785 43469214 -174567944 + MER57B LTR ERV1 3 424 -10 698 256 25 40 chr3 43469222 43469484 -174567674 + MER57B-int LTR ERV1 3 298 -7239 326 314 56 63 chr3 43470101 43470420 -174566738 + MER57B-int LTR ERV1 1274 1590 -5211 842 346 58 52 chr3 43471479 43473122 -174564036 + MER57B-int LTR ERV1 158 3877 -2924 2135 267 12 51 chr3 43473218 43474587 -174562571 + MER57B-int LTR ERV1 2145 6169 -1368 2007 144 7 0 chr3 43475347 43475639 -174561519 - AluSx SINE Alu -18 294 1 602 311 29 33 chr3 43476433 43476674 -174560484 + MER57B-int LTR ERV1 6816 7055 -482 515 121 20 40 chr3 43476723 43476822 -174560336 + MER57B-int LTR ERV1 7441 7537 0 2571 134 16 32 chr3 43476822 43477261 -174559897 + MER57B LTR ERV1 1 432 -2 256 318 80 25 chr3 43477267 43477468 -174559690 - L2 LINE L2 -1120 2194 1983 216 0 0 0 chr3 43477477 43477501 -174559657 + (TG)n Simple_repeat Simple_repeat 1 24 0 187 267 0 22 chr3 43477671 43477716 -174559442 - L2 LINE L2 -13 3300 3257 * 248 254 0 17 chr3 43477686 43477745 -174559413 - MIR SINE MIR -21 241 184 1711 158 0 4 chr3 43477757 43478051 -174559107 + AluSx SINE Alu 26 318 0 1906 151 29 17 chr3 43478081 43478432 -174558726 + Tigger2a DNA MER2_type 8 362 -72 990 176 35 10 chr3 43478552 43478751 -174558407 + Tigger2 DNA MER2_type 2515 2718 0 215 227 53 67 chr3 43478751 43478826 -174558332 - MIR SINE MIR -105 157 84 509 244 52 0 chr3 43478837 43478952 -174558206 + Tigger3(Golem) DNA MER2_type 2 122 -2907 * 3805 114 62 48 chr3 43478938 43479226 -174557932 + Tigger3(Golem) DNA MER2_type 2285 2568 -461 1456 178 13 64 chr3 43479226 43479540 -174557618 + AluJo SINE Alu 1 298 -14 3805 114 62 48 chr3 43479540 43479976 -174557182 + Tigger3(Golem) DNA MER2_type 2568 3019 -10 261 0 0 0 chr3 43480127 43480156 -174557002 + (T)n Simple_repeat Simple_repeat 1 29 0 297 364 25 16 chr3 43480833 43480954 -174556204 + LTR16C LTR ERVL 127 248 -243 392 257 46 53 chr3 43480982 43481053 -174556105 + LTR16C LTR ERVL 341 411 -80 1963 176 12 47 chr3 43481053 43481457 -174555701 + MLT1B LTR MaLR 1 390 0 392 257 46 53 chr3 43481457 43481537 -174555621 + LTR16C LTR ERVL 411 491 0 400 330 132 9 chr3 43482251 43482463 -174554695 - MIR SINE MIR -14 248 11 2241 266 84 49 chr3 43482944 43484159 -174552999 - L1MDa LINE L1 -1371 5169 3913 491 194 54 0 chr3 43484167 43484296 -174552862 + L1MC2 LINE L1 5313 5448 -896 * 2472 180 90 40 chr3 43484294 43484926 -174552232 + L1MC2 LINE L1 5675 6338 -6 680 258 75 11 chr3 43484968 43485340 -174551818 - L1M4 LINE L1 -2614 3532 3137 * 1270 211 61 27 chr3 43485334 43485709 -174551449 - L1MA9 LINE L1 -1 6311 5924 1418 177 36 33 chr3 43485709 43486043 -174551115 + THE1C LTR MaLR 1 335 -40 2348 203 85 14 chr3 43486150 43487258 -174549900 - L1MA9 LINE L1 -399 5913 4727 706 147 88 78 chr3 43487364 43487568 -174549590 + L1MC2 LINE L1 6133 6338 -6 754 264 73 5 chr3 43487610 43487981 -174549177 - L1MDa LINE L1 -2614 3926 3531 * 4230 197 66 36 chr3 43487975 43488351 -174548807 - L1MA9 LINE L1 -1 6311 5948 1881 154 38 22 chr3 43488351 43488720 -174548438 + THE1C LTR MaLR 1 375 0 4230 197 66 36 chr3 43488720 43490369 -174546789 - L1MA9 LINE L1 -364 5948 4233 1835 218 11 11 chr3 43490382 43490836 -174546322 + L1 LINE L1 3257 3710 -2436 1191 200 62 0 chr3 43490837 43491097 -174546061 + L1 LINE L1 3817 4092 -2054 1187 284 109 34 chr3 43491092 43491624 -174545534 - L1M4 LINE L1 -5373 582 11 * 7410 242 97 18 chr3 43491640 43491750 -174545408 - L1MDa LINE L1 -2997 3543 3443 1040 171 37 14 chr3 43491750 43491967 -174545191 - L1PA16 LINE L1 -2 6164 5943 7410 242 97 18 chr3 43491967 43492806 -174544352 - L1MDa LINE L1 -3097 3443 2671 4210 130 6 9 chr3 43492806 43493461 -174543697 + MER39B LTR ERV1 1 653 0 7410 242 97 18 chr3 43493461 43495627 -174541531 - L1MDa LINE L1 -3869 2671 173 1227 107 0 0 chr3 43495634 43495793 -174541365 - AluSp SINE Alu -18 295 137 693 204 7 14 chr3 43495794 43495941 -174541217 - L1MDa LINE L1 -6379 161 16 500 239 67 8 chr3 43495989 43496123 -174541035 - MLT1H LTR MaLR -396 153 12 3962 132 53 78 chr3 43496721 43497515 -174539643 + LTR1 LTR ERV1 12 785 0 2000 117 154 9 chr3 43497552 43497902 -174539256 + L1PB1 LINE L1 5734 6134 -17 378 276 135 0 chr3 43497911 43498081 -174539077 + L1MC4a LINE L1 5957 6149 -1659 21 0 0 0 chr3 43498227 43498248 -174538910 + AT_rich Low_complexity Low_complexity 1 21 0 313 364 123 5 chr3 43498501 43498721 -174538437 - MIR SINE MIR -16 246 1 813 259 48 35 chr3 43499686 43499721 -174537437 - L1MEc LINE L1 -3739 3218 3185 1780 164 44 6 chr3 43499721 43500063 -174537095 + MER46B DNA MER2_type 5 234 -2 813 259 48 35 chr3 43500063 43500474 -174536684 - L1MEc LINE L1 -3772 3185 2807 202 414 23 23 chr3 43500882 43501102 -174536056 - L2 LINE L2 -462 2852 2633 473 263 29 108 chr3 43502086 43502211 -174534947 - MIR SINE MIR -39 223 124 1104 228 16 0 chr3 43502211 43502461 -174534697 - L1PB4 LINE L1 -3 6153 5900 473 263 29 108 chr3 43502461 43502575 -174534583 - MIR SINE MIR -138 124 3 2708 272 77 11 chr3 43503283 43504022 -174533136 + L1MDa LINE L1 11 798 -5742 2752 278 76 19 chr3 43504027 43504933 -174532225 - L1MEc LINE L1 -5900 959 2 1032 288 109 16 chr3 43505017 43505403 -174531755 - LTR16A1 LTR ERVL -34 423 2 197 248 248 29 chr3 43505695 43505800 -174531358 - L2 LINE L2 -2 3270 3143 2015 131 3 0 chr3 43506566 43506873 -174530285 + AluSx SINE Alu 3 310 0 327 336 40 20 chr3 43507204 43507353 -174529805 + MLT1H LTR MaLR 20 171 -378 831 179 106 11 chr3 43507356 43507535 -174529623 + MER34C LTR ERV1 4 199 -386 672 333 20 5 chr3 43507561 43507756 -174529402 - MER115 DNA AcHobo -345 348 151 1436 201 164 23 chr3 43508309 43508706 -174528452 - MLT1C LTR MaLR -12 455 3 1469 255 86 18 chr3 43508714 43508810 -174528348 - MLT1C-int LTR MaLR -6 1365 1277 2257 108 0 0 chr3 43508810 43509105 -174528053 - AluSx SINE Alu -17 295 1 1469 255 86 18 chr3 43509105 43509451 -174527707 - MLT1C-int LTR MaLR -94 1277 893 1370 213 68 95 chr3 43509437 43509878 -174527280 - MLT1C-int LTR MaLR -383 988 560 * 2612 192 26 87 chr3 43509878 43510705 -174526453 + MER4D LTR ERV1 1 896 -7 686 147 9 0 chr3 43510713 43510829 -174526329 - MLT1C-int LTR MaLR -808 563 447 2108 180 42 27 chr3 43510911 43511117 -174526041 - MLT1C LTR MaLR -2 465 264 2134 121 60 14 chr3 43511117 43511465 -174525693 - THE1B LTR MaLR 0 364 1 2108 180 42 27 chr3 43511465 43511707 -174525451 - MLT1C LTR MaLR -203 264 10 1392 297 150 48 chr3 43511887 43513569 -174523589 + HAL1 LINE L1 4 1857 -650 371 288 38 15 chr3 43514408 43514540 -174522618 + MIR SINE MIR 123 257 -5 525 258 133 21 chr3 43514835 43515075 -174522083 + MER5C DNA MER1_type 5 271 -53 321 307 127 37 chr3 43515163 43515352 -174521806 + L2 LINE L2 3104 3309 -4 378 0 0 0 chr3 43516775 43516817 -174520341 + (CA)n Simple_repeat Simple_repeat 1 42 0 365 306 104 14 chr3 43517186 43517410 -174519748 - MIR SINE MIR -11 251 2 255 308 84 0 chr3 43518439 43518546 -174518612 + MIR SINE MIR 76 191 -71 447 312 126 21 chr3 43520035 43520423 -174516735 - LTR33 LTR ERVL -59 462 34 297 194 119 0 chr3 43520895 43520962 -174516196 - L2 LINE L2 -19 3253 3179 1645 190 45 0 chr3 43521246 43521535 -174515623 + AluJb SINE Alu 3 304 -8 188 390 0 0 chr3 43522228 43522287 -174514871 - L3 LINE CR1 -1 1576 1518 556 237 86 38 chr3 43522327 43522513 -174514645 + MER3 DNA MER1_type 12 206 -3 229 273 0 0 chr3 43522473 43522528 -174514630 - MER3 DNA MER1_type -119 90 36 * 182 105 26 0 chr3 43522840 43522878 -174514280 + (TTTAA)n Simple_repeat Simple_repeat 3 41 0 24 0 0 0 chr3 43523413 43523437 -174513721 + AT_rich Low_complexity Low_complexity 1 24 0 940 216 74 66 chr3 43525001 43525436 -174511722 - MLT1A2 LTR MaLR 0 374 14 315 0 0 0 chr3 43526363 43526398 -174510760 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2806 3 0 0 chr3 43526400 43526701 -174510457 - AluYb8 SINE Alu -17 301 1 23 0 0 0 chr3 43526701 43526724 -174510434 + AT_rich Low_complexity Low_complexity 1 23 0 213 406 58 0 chr3 43526924 43527062 -174510096 + MIR3 SINE MIR 36 181 -27 340 279 12 0 chr3 43527646 43527732 -174509426 + MER96 DNA MER1_type? 79 165 -10 2297 213 48 8 chr3 43527820 43528356 -174508802 - MER74A LTR ERVL 0 558 1 188 206 0 0 chr3 43528463 43528497 -174508661 + L2 LINE L2 3258 3291 -22 180 111 0 0 chr3 43530003 43530030 -174507128 + (A)n Simple_repeat Simple_repeat 1 27 0 368 338 75 10 chr3 43530044 43530245 -174506913 - MIR SINE MIR 0 262 49 239 292 119 18 chr3 43530276 43530444 -174506714 - HAL1 LINE L1 -8 2499 2315 1193 226 4 0 chr3 43530739 43531000 -174506158 + L1ME2 LINE L1 5720 5981 -183 6620 60 26 1 chr3 43531002 43532577 -174504581 + L1PA5 LINE L1 4564 6152 -2 321 263 25 0 chr3 43532581 43532661 -174504497 - MLT2C1 LTR ERVL -314 83 2 9738 231 41 10 chr3 43532662 43535013 -174502145 - ERVL LTR ERVL -1 5653 3263 1689 238 130 33 chr3 43535008 43535437 -174501721 - ERVL LTR ERVL -2704 3060 2564 * 2814 0 0 0 chr3 43535437 43535737 -174501421 + AluYa8 SINE Alu 1 300 -10 1689 238 130 33 chr3 43535737 43535857 -174501301 - ERVL LTR ERVL -3200 2564 2457 768 203 0 0 chr3 43535975 43536108 -174501050 - ERVL LTR ERVL -3622 2142 2010 21 71 0 0 chr3 43536112 43536154 -174501004 + AT_rich Low_complexity Low_complexity 1 42 0 700 150 0 36 chr3 43536396 43536536 -174500622 + L1PB3 LINE L1 6019 6153 -1 22 0 0 0 chr3 43537394 43537416 -174499742 + AT_rich Low_complexity Low_complexity 1 22 0 203 138 0 0 chr3 43537424 43537453 -174499705 + (TTCC)n Simple_repeat Simple_repeat 3 31 0 1785 164 0 11 chr3 43538171 43538489 -174498669 - AluJb SINE Alu 0 315 1 5952 152 47 25 chr3 43538519 43539681 -174497477 - Tigger3b DNA MER2_type -13 1218 31 1077 282 72 11 chr3 43540179 43540526 -174496632 + MLT1A2 LTR MaLR 1 368 -6 1953 210 67 6 chr3 43540533 43541083 -174496075 + MLT1A2-int LTR MaLR 20 739 -632 280 226 16 0 chr3 43541192 43541254 -174495904 + MLT1A2-int LTR MaLR 669 731 -1004 1673 232 36 8 chr3 43541452 43541844 -174495314 + MLT1A2-int LTR MaLR 1314 1716 -19 330 293 30 85 chr3 43542264 43542428 -174494730 - HAL1 LINE L1 -688 1819 1665 3566 216 53 10 chr3 43542431 43543350 -174493808 - L1MB1 LINE L1 -853 5293 4335 4065 181 65 2 chr3 43543351 43544154 -174493004 + L1MB1 LINE L1 5315 6167 -1 812 230 60 105 chr3 43544212 43544660 -174492498 - HAL1 LINE L1 -869 1638 1211 348 169 0 0 chr3 43544690 43544767 -174492391 + CT-rich Low_complexity Low_complexity 2 78 0 547 318 18 39 chr3 43545020 43545303 -174491855 - HAL1 LINE L1 -1600 907 631 304 340 24 52 chr3 43545334 43545584 -174491574 - HAL1 LINE L1 -2149 358 116 292 227 13 13 chr3 43545894 43545969 -174491189 - MIR SINE MIR -111 151 77 227 269 202 25 chr3 43547211 43547330 -174489828 + MIR SINE MIR 90 229 -33 315 0 0 0 chr3 43547492 43547527 -174489631 + (TG)n Simple_repeat Simple_repeat 2 36 0 292 230 139 61 chr3 43547947 43548112 -174489046 - MIR SINE MIR -77 185 8 274 269 10 29 chr3 43548464 43548568 -174488590 + MLT1A2-int LTR MaLR 1622 1723 -12 294 242 150 33 chr3 43548590 43548710 -174488448 + MLT1A2 LTR MaLR 7 140 -250 2066 115 7 3 chr3 43548794 43549089 -174488069 + AluSx SINE Alu 11 306 -6 2037 115 3 7 chr3 43550664 43550951 -174486207 - AluSx SINE Alu -26 286 1 796 234 67 60 chr3 43551216 43551498 -174485660 + MER5C DNA MER1_type 41 324 0 207 0 0 0 chr3 43652783 43652806 -174384352 + (TG)n Simple_repeat Simple_repeat 2 24 0 2289 102 0 7 chr3 43652806 43653110 -174384048 - AluSx SINE Alu -10 302 1 1601 166 21 0 chr3 43654747 43655031 -174382127 - AluJb SINE Alu -22 290 1 2225 165 23 44 chr3 43655032 43655506 -174381652 - L1MD1 LINE L1 -350 5892 5429 1457 30 0 12 chr3 43655770 43655937 -174381221 - L1PA3 LINE L1 0 6155 5991 2231 166 56 12 chr3 43655938 43656341 -174380817 + MER82 DNA MER2_type 151 572 -76 1501 181 11 7 chr3 43656341 43656617 -174380541 - AluSp SINE Alu -15 298 22 2041 125 11 3 chr3 43657107 43657394 -174379764 + AluSx SINE Alu 6 294 -18 683 219 0 0 chr3 43657437 43657556 -174379602 + FLAM_A SINE Alu 5 123 -10 2008 104 7 4 chr3 43658100 43658370 -174378788 - AluSx SINE Alu -27 285 15 470 191 38 9 chr3 43658384 43658489 -174378669 + Charlie1 DNA MER1_type 2638 2745 -16 1349 130 9 31 chr3 43658614 43658837 -174378321 - AluSg/x SINE Alu -20 292 75 392 323 28 9 chr3 43658888 43659024 -174378134 - MIR3 SINE MIR -29 179 39 230 371 68 86 chr3 43659478 43659699 -174377459 - L2 LINE L2 -90 3182 2966 297 282 37 83 chr3 43659898 43660020 -174377138 - L1ME LINE L1 -565 5556 5447 2552 57 3 0 chr3 43660020 43660321 -174376837 + AluY SINE Alu 1 302 -9 297 282 37 83 chr3 43660321 43660414 -174376744 - L1ME LINE L1 -674 5447 5351 377 307 151 10 chr3 43660671 43660863 -174376295 + MIR SINE MIR 14 232 -30 342 339 163 25 chr3 43660889 43661134 -174376024 + L2 LINE L2 2993 3271 -1 438 256 141 41 chr3 43661351 43661431 -174375727 + L1MC4a LINE L1 5727 5798 -2010 249 33 0 0 chr3 43661431 43661461 -174375697 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 2144 126 3 3 chr3 43661463 43661765 -174375393 + AluSx SINE Alu 1 302 -10 438 256 141 41 chr3 43661765 43661951 -174375207 + L1MC4a LINE L1 5798 6023 -1785 2096 113 0 27 chr3 43661976 43662276 -174374882 + AluSx SINE Alu 1 292 -20 1232 106 19 43 chr3 43662622 43662829 -174374329 + AluSg/x SINE Alu 95 296 -16 789 286 84 31 chr3 43662844 43663324 -174373834 - L1ME LINE L1 -578 5592 5068 2282 100 3 3 chr3 43663324 43663623 -174373535 + AluSg SINE Alu 1 299 -11 789 286 84 31 chr3 43663623 43663852 -174373306 - L1ME LINE L1 -1102 5068 4853 1751 199 10 33 chr3 43664021 43664412 -174372746 - L1M4c LINE L1 -4460 1924 1543 2302 103 3 3 chr3 43664424 43664736 -174372422 - AluSx SINE Alu 0 312 1 216 0 0 0 chr3 43664737 43664761 -174372397 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1985 132 3 3 chr3 43664763 43665050 -174372108 - AluSx SINE Alu -25 287 1 276 100 43 86 chr3 43665050 43665120 -174372038 - L1M4c LINE L1 -4825 1559 1493 1637 138 11 35 chr3 43665258 43665541 -174371617 + LTR22A LTR ERVK 183 458 0 2176 113 7 0 chr3 43665717 43666010 -174371148 - AluSp SINE Alu -18 295 1 401 203 0 0 chr3 43766287 43766361 -174270797 - L1PA16 LINE L1 -265 5901 5828 5198 134 21 14 chr3 43766364 43767201 -174269957 - Tigger1 DNA MER2_type -910 1508 666 5330 108 99 116 chr3 43767204 43768794 -174268364 - pTR5 LTR ERV1 0 2438 748 339 113 0 48 chr3 43768794 43768856 -174268302 - Tigger1 DNA MER2_type -1744 674 616 823 130 48 0 chr3 43768861 43769007 -174268151 - L1MA4 LINE L1 -6 6294 6142 604 173 0 16 chr3 43769007 43769134 -174268024 - L1MA4A LINE L1 -202 6101 5977 2835 201 62 7 chr3 43769135 43769727 -174267431 - Tigger1 DNA MER2_type -1777 641 17 191 206 196 11 chr3 43769982 43770074 -174267084 + MIR SINE MIR 148 256 -6 187 250 118 0 chr3 43770593 43770661 -174266497 + MIR3 SINE MIR 87 162 -46 23 33 0 0 chr3 43770759 43770789 -174266369 + AT_rich Low_complexity Low_complexity 1 30 0 448 268 127 6 chr3 43771914 43772071 -174265087 + LTR50 LTR ERVL 1 176 -619 266 290 51 68 chr3 43772392 43772568 -174264590 - HAL1 LINE L1 -2333 174 2 475 294 27 7 chr3 43772808 43772954 -174264204 + MIR SINE MIR 53 201 -61 1339 211 53 19 chr3 43773304 43773838 -174263320 + MLT1E2 LTR MaLR 8 626 0 299 281 45 0 chr3 43774286 43774375 -174262783 + MIR SINE MIR 111 203 -59 1125 169 30 5 chr3 43776195 43776396 -174260762 + L1PA16 LINE L1 5937 6142 -24 5614 133 29 15 chr3 43776406 43777315 -174259843 + Tigger1 DNA MER2_type 1498 2418 0 232 208 75 0 chr3 43778218 43778271 -174258887 - LTR33A LTR ERVL 0 523 467 413 284 91 11 chr3 43779225 43779401 -174257757 - MIR SINE MIR 0 262 73 207 170 0 0 chr3 43779444 43779491 -174257667 + (CA)n Simple_repeat Simple_repeat 2 48 0 24 32 0 0 chr3 43779836 43779867 -174257291 + AT_rich Low_complexity Low_complexity 1 31 0 31 82 0 0 chr3 43780742 43780815 -174256343 + AT_rich Low_complexity Low_complexity 1 73 0 23 54 0 0 chr3 43780971 43781008 -174256150 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr3 43781134 43781158 -174256000 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr3 43781458 43781486 -174255672 + AT_rich Low_complexity Low_complexity 1 28 0 521 331 43 30 chr3 43781526 43781898 -174255260 - L1MC/D LINE L1 -2177 5631 5255 2496 164 58 91 chr3 43782043 43782733 -174254425 - L1MC2 LINE L1 0 6344 5678 291 345 36 49 chr3 43782785 43783008 -174254150 + L2 LINE L2 2629 2848 -466 270 279 52 32 chr3 43783008 43783162 -174253996 + L1ME3A LINE L1 5207 5363 -783 1289 121 10 35 chr3 43783206 43783404 -174253754 - AluSq SINE Alu -22 291 99 438 278 28 7 chr3 43783454 43783598 -174253560 + L1ME3A LINE L1 5451 5597 -569 223 239 30 0 chr3 43783632 43783699 -174253459 + (TA)n Simple_repeat Simple_repeat 1 69 0 906 258 80 19 chr3 43783731 43784092 -174253066 + L1ME3A LINE L1 5788 6170 0 22 0 0 0 chr3 43785668 43785690 -174251468 + AT_rich Low_complexity Low_complexity 1 22 0 1082 156 14 46 chr3 43785864 43786082 -174251076 - AluSg/x SINE Alu -17 295 85 334 39 0 20 chr3 43786082 43786133 -174251025 - AluY SINE Alu -52 249 200 1168 81 0 0 chr3 43786133 43786282 -174250876 - AluSq/x SINE Alu -164 149 1 323 233 144 62 chr3 43786577 43786723 -174250435 - MLT1H LTR MaLR -9 540 383 191 364 0 18 chr3 43787152 43787207 -174249951 + L2 LINE L2 3127 3180 -92 1240 250 38 31 chr3 43787354 43787865 -174249293 + MER77 LTR ERV1 55 601 -4 320 332 113 55 chr3 43788051 43788442 -174248716 - L2 LINE L2 -55 3258 2789 745 253 22 6 chr3 43788442 43788624 -174248534 + MER5A DNA MER1_type 2 186 -3 320 332 113 55 chr3 43788624 43788831 -174248327 - L2 LINE L2 -524 2789 2595 210 296 98 23 chr3 43790523 43790655 -174246503 - L2 LINE L2 0 3313 3172 4448 194 13 33 chr3 43790704 43790936 -174246222 - L1 LINE L1 -1280 4866 4631 4783 65 5 5 chr3 43790936 43791566 -174245592 - L1PA5 LINE L1 -8 6146 5517 4448 194 13 33 chr3 43791566 43792351 -174244807 - L1 LINE L1 -1515 4631 3870 6627 75 9 0 chr3 43792360 43793683 -174243475 - L1PA7 LINE L1 0 6154 4824 220 326 116 43 chr3 43794034 43794172 -174242986 - MIR SINE MIR -7 255 108 231 349 34 34 chr3 43797018 43797164 -174239994 + L2 LINE L2 2553 2698 -616 243 349 60 18 chr3 43797753 43797919 -174239239 + LTR16C LTR ERVL 305 477 -14 257 333 60 47 chr3 43798040 43798190 -174238968 + L2 LINE L2 3116 3267 -5 189 0 0 0 chr3 43799623 43799644 -174237514 + (T)n Simple_repeat Simple_repeat 1 21 0 223 213 16 16 chr3 43799974 43800035 -174237123 + (TAA)n Simple_repeat Simple_repeat 3 63 0 724 272 130 45 chr3 43800090 43800605 -174236553 + L1ME LINE L1 5264 5822 -348 295 309 85 24 chr3 43801051 43801216 -174235942 + MIR SINE MIR 82 256 -6 3894 156 48 10 chr3 43804135 43804849 -174232309 + L1MC2 LINE L1 5593 6333 -11 914 112 8 0 chr3 43805035 43805194 -174231964 + L1PA8 LINE L1 6014 6173 0 216 0 0 0 chr3 43806627 43806651 -174230507 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 25 65 0 0 chr3 43807381 43807427 -174229731 + AT_rich Low_complexity Low_complexity 1 46 0 593 345 47 13 chr3 43807532 43807767 -174229391 + MIR SINE MIR 19 261 -1 239 0 0 31 chr3 43808479 43808511 -174228647 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 456 304 121 38 chr3 43808886 43809225 -174227933 + MLT1I LTR MaLR 42 408 -1 2483 253 104 56 chr3 43810610 43811505 -174225653 + L1MDa LINE L1 27 964 -5576 439 209 43 0 chr3 43811512 43811627 -174225531 + L1MDa LINE L1 1750 1869 -4671 334 155 35 0 chr3 43811626 43811684 -174225474 - L1MA9 LINE L1 -230 6082 6023 * 645 229 0 0 chr3 43811685 43811825 -174225333 + L1MA9 LINE L1 6152 6291 -21 512 154 0 0 chr3 43811844 43811935 -174225223 + L1MDa LINE L1 1861 1951 -4589 * 1239 195 78 33 chr3 43811931 43812077 -174225081 + L1MD1 LINE L1 5894 6032 -210 1975 131 0 3 chr3 43812077 43812368 -174224790 + AluSg SINE Alu 1 290 -20 1239 195 78 33 chr3 43812368 43812555 -174224603 + L1MD1 LINE L1 6032 6242 0 377 329 52 73 chr3 43812833 43813161 -174223997 - L3 LINE CR1 -264 1313 993 712 48 39 10 chr3 43813192 43813296 -174223862 - AluYa5/8 SINE Alu 0 310 204 353 215 16 16 chr3 43813499 43813620 -174223538 + (TA)n Simple_repeat Simple_repeat 2 122 0 210 133 83 0 chr3 43814469 43814529 -174222629 + (TA)n Simple_repeat Simple_repeat 1 65 0 235 253 78 102 chr3 43815945 43816111 -174221047 - MER103 DNA DNA -1 165 4 3094 167 41 5 chr3 43816599 43817179 -174219979 - LTR26 LTR ERV1 -2 601 1 189 0 0 0 chr3 43817541 43817562 -174219596 + (GA)n Simple_repeat Simple_repeat 2 22 0 2037 128 3 25 chr3 43817755 43818074 -174219084 + AluSx SINE Alu 1 312 0 38 0 0 0 chr3 43818242 43818280 -174218878 + AT_rich Low_complexity Low_complexity 1 38 0 307 273 73 47 chr3 43818320 43818470 -174218688 + HAL1b LINE L1 754 907 -441 216 0 0 0 chr3 43818912 43818936 -174218222 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 342 45 0 0 chr3 43819328 43819372 -174217786 + (CA)n Simple_repeat Simple_repeat 1 44 0 570 356 35 58 chr3 43819616 43820048 -174217110 + L2 LINE L2 2423 2844 -470 21 0 0 0 chr3 43820641 43820662 -174216496 + AT_rich Low_complexity Low_complexity 1 21 0 628 252 18 66 chr3 43821030 43821256 -174215902 + L2 LINE L2 3097 3311 -2 23 33 0 0 chr3 43821256 43821286 -174215872 + AT_rich Low_complexity Low_complexity 1 30 0 2895 6 0 0 chr3 43821348 43821665 -174215493 - AluYb8 SINE Alu -1 317 1 211 133 67 0 chr3 43822604 43822649 -174214509 + T-rich Low_complexity Low_complexity 3 50 0 1538 227 18 63 chr3 43822667 43823063 -174214095 - MLT1B LTR MaLR -10 380 3 277 385 68 0 chr3 43823074 43823266 -174213892 + L2 LINE L2 1005 1209 -2105 611 333 148 20 chr3 43823540 43824044 -174213114 - L2 LINE L2 -8 3305 2748 2054 106 0 0 chr3 43824736 43825050 -174212108 + AluSx SINE Alu 1 314 0 262 184 0 0 chr3 43825087 43825136 -174212022 + AluSp SINE Alu 121 169 -134 22 0 0 0 chr3 43825432 43825454 -174211704 + AT_rich Low_complexity Low_complexity 1 22 0 246 32 0 0 chr3 43825486 43825517 -174211641 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 946 59 0 0 chr3 43825517 43825636 -174211522 - L1PA3 LINE L1 -13 6142 6024 787 80 9 0 chr3 43825636 43825748 -174211410 - L1P LINE L1 -1339 4807 4695 313 324 59 37 chr3 43826278 43826414 -174210744 - L2 LINE L2 0 3272 3134 407 290 138 18 chr3 43826512 43826967 -174210191 + L1MDa LINE L1 1913 2422 -4118 216 424 12 0 chr3 43827042 43827127 -174210031 - L2 LINE L2 -48 3224 3139 222 150 0 0 chr3 43827223 43827263 -174209895 + (CA)n Simple_repeat Simple_repeat 2 41 0 204 227 0 0 chr3 43827382 43827426 -174209732 + (CATATA)n Simple_repeat Simple_repeat 3 46 0 7042 48 16 0 chr3 43827509 43828511 -174208647 - L1PA3 LINE L1 -2 6153 5146 737 138 113 59 chr3 43829231 43829434 -174207724 + AluSg/x SINE Alu 94 307 -3 2222 88 3 3 chr3 43829559 43829853 -174207305 - AluSc SINE Alu -15 294 1 21 36 0 0 chr3 43829982 43830010 -174207148 + AT_rich Low_complexity Low_complexity 1 28 0 409 335 75 69 chr3 43832150 43832700 -174204458 + HAL1 LINE L1 826 1378 -1129 22 80 0 0 chr3 43832987 43833037 -174204121 + AT_rich Low_complexity Low_complexity 1 50 0 599 72 0 0 chr3 43833593 43833676 -174203482 - AluS SINE Alu -230 83 1 5105 168 18 31 chr3 43833767 43834059 -174203099 - L1MA4 LINE L1 -11 6289 5995 2821 7 0 0 chr3 43834059 43834369 -174202789 - AluYa5 SINE Alu -1 310 1 5105 168 18 31 chr3 43834369 43834801 -174202357 - L1MA4 LINE L1 -305 5995 5559 2435 54 3 0 chr3 43834801 43835097 -174202061 - AluY SINE Alu -14 297 1 5105 168 18 31 chr3 43835097 43835573 -174201585 - L1MA4 LINE L1 -741 5559 5100 656 165 24 0 chr3 43835586 43835713 -174201445 - L1MA4 LINE L1 -1135 5011 4882 2467 205 44 4 chr3 43835714 43836216 -174200942 + L1 LINE L1 3357 3878 -2268 3302 142 5 40 chr3 43836219 43836838 -174200320 + L1PB4 LINE L1 5557 6153 -3 1778 107 95 0 chr3 43836869 43837215 -174199943 + L1P LINE L1 4441 4819 -1327 195 319 149 0 chr3 43838602 43838743 -174198415 - MIR SINE MIR -51 211 50 235 326 118 7 chr3 43838810 43838945 -174198213 + MIR SINE MIR 113 262 0 1640 167 31 3 chr3 43839558 43839845 -174197313 - AluSx SINE Alu -17 295 1 205 216 0 39 chr3 43840107 43840158 -174197000 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 247 146 0 0 chr3 43840437 43840484 -174196674 + MIR SINE MIR 64 111 -97 304 232 30 77 chr3 43840867 43841035 -174196123 - LTR16A1 LTR ERVL -1 456 297 458 192 0 0 chr3 43841038 43841116 -174196042 + MER5A DNA MER1_type 1 78 -111 369 256 26 8 chr3 43841264 43841381 -174195777 - LTR16A1 LTR ERVL -330 127 9 604 293 50 0 chr3 43841529 43841751 -174195407 - L1MB7 LINE L1 -19 6165 5933 1469 104 0 5 chr3 43841751 43841944 -174195214 - AluY SINE Alu -20 291 100 240 111 0 0 chr3 43842292 43842328 -174194830 + (TG)n Simple_repeat Simple_repeat 1 36 0 422 331 41 0 chr3 43842400 43842569 -174194589 + MLT1J LTR MaLR 2 177 -334 284 264 116 8 chr3 43843465 43843594 -174193564 - MER104 DNA Tc2 -3 177 35 2507 67 0 0 chr3 43843681 43843981 -174193177 - AluY SINE Alu -11 300 1 1063 299 81 28 chr3 43844124 43844983 -174192175 + L2 LINE L2 2357 3313 0 59 74 0 0 chr3 43845887 43846009 -174191149 + AT_rich Low_complexity Low_complexity 1 122 0 611 246 49 44 chr3 43846048 43846138 -174191020 + MER3 DNA MER1_type 6 94 -115 1876 164 27 21 chr3 43846138 43846473 -174190685 + MER1B DNA MER1_type 1 337 0 611 246 49 44 chr3 43846473 43846585 -174190573 + MER3 DNA MER1_type 94 209 0 231 253 58 58 chr3 43847141 43847228 -174189930 + L2 LINE L2 3185 3271 -1 2265 105 0 13 chr3 43847605 43847918 -174189240 - AluSc SINE Alu 0 309 1 30 27 0 0 chr3 43848362 43848399 -174188759 + AT_rich Low_complexity Low_complexity 1 37 0 183 318 95 8 chr3 43848464 43848590 -174188568 - MIR SINE MIR -1 261 125 354 274 0 0 chr3 43849265 43849411 -174187747 + (TA)n Simple_repeat Simple_repeat 1 146 0 2876 170 23 0 chr3 43849424 43849990 -174187168 + L1 LINE L1 4226 4804 -1342 10088 172 30 41 chr3 43850099 43851069 -174186089 - Tigger2 DNA MER2_type -689 2029 1050 2107 115 0 10 chr3 43851069 43851373 -174185785 - AluSc SINE Alu -8 301 1 10088 172 30 41 chr3 43851373 43852454 -174184704 - Tigger2 DNA MER2_type -1668 1050 1 221 139 23 0 chr3 43852454 43852497 -174184661 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 316 355 26 7 chr3 43852784 43852936 -174184222 + MIR SINE MIR 96 250 -12 5156 183 20 35 chr3 43853837 43854872 -174182286 - ERVL LTR ERVL -578 5186 4167 1053 215 0 5 chr3 43854860 43855060 -174182098 - ERVL LTR ERVL -3335 2429 2231 * 571 234 26 7 chr3 43855060 43855214 -174181944 - MLT2D LTR ERVL -257 157 1 2235 101 0 3 chr3 43855328 43855634 -174181524 - AluSc SINE Alu -4 305 1 10924 28 2 6 chr3 43855649 43857715 -174179443 + L1PA3 LINE L1 4093 6155 0 1823 152 0 4 chr3 43857840 43858109 -174179049 - AluSx SINE Alu -44 268 1 751 240 21 16 chr3 43858109 43858396 -174178762 + MER90 LTR ERV1 288 614 0 360 224 18 127 chr3 43859858 43860010 -174177148 + MIR SINE MIR 43 177 -62 24 0 0 0 chr3 43860243 43860267 -174176891 + AT_rich Low_complexity Low_complexity 1 24 0 209 281 0 0 chr3 43860309 43860366 -174176792 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 221 0 35 0 chr3 43860417 43860446 -174176712 + (TA)n Simple_repeat Simple_repeat 1 30 0 10221 218 47 16 chr3 43860573 43865406 -174171752 + L1PB1 LINE L1 6 5273 -1589 3397 173 31 114 chr3 43865524 43866616 -174170542 - L1 LINE L1 -863 5283 4283 21 57 0 0 chr3 43867110 43867145 -174170013 + AT_rich Low_complexity Low_complexity 1 35 0 269 273 23 11 chr3 43867343 43867431 -174169727 + L1M4 LINE L1 4075 4163 -1983 5440 158 19 30 chr3 43869846 43870992 -174166166 + L1PB1 LINE L1 5355 6479 -388 398 20 20 0 chr3 43870992 43871043 -174166115 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 5440 158 19 30 chr3 43871043 43871427 -174165731 + L1PB1 LINE L1 6479 6866 -1 2156 130 0 0 chr3 43871439 43871732 -174165426 - AluSx SINE Alu -19 293 1 262 178 0 0 chr3 43872309 43872354 -174164804 - L1M1 LINE L1 -470 5835 5791 2793 142 11 0 chr3 43872365 43872831 -174164327 - L1M1 LINE L1 -490 5815 5345 2013 118 11 0 chr3 43872952 43873224 -174163934 + AluSx SINE Alu 27 301 -11 7355 36 11 5 chr3 43873713 43874827 -174162331 - L1PA4 LINE L1 -7 6148 5033 492 103 13 0 chr3 43874827 43874911 -174162247 + L1PA4 LINE L1 4956 5040 -1106 602 248 120 40 chr3 43875656 43876056 -174161102 + L1M4 LINE L1 4318 4749 -1397 37 39 0 0 chr3 43876200 43876251 -174160907 + AT_rich Low_complexity Low_complexity 1 51 0 34787 48 30 2 chr3 43876304 43880742 -174156416 + L1P LINE L1 3 4565 -1581 224 306 32 0 chr3 43881433 43881495 -174155663 - L2 LINE L2 -559 2755 2692 479 258 44 31 chr3 43882530 43882689 -174154469 - MIR SINE MIR -2 260 100 437 145 59 7 chr3 43882689 43882841 -174154317 + (TA)n Simple_repeat Simple_repeat 1 160 0 404 279 8 41 chr3 43882876 43882998 -174154160 - FLAM_A SINE Alu -15 118 1 319 93 37 0 chr3 43883000 43883054 -174154104 + L1MA5A LINE L1 6242 6297 0 269 227 159 11 chr3 43883088 43883176 -174153982 - MIR SINE MIR -160 102 2 302 338 6 45 chr3 43883571 43883728 -174153430 - MIR SINE MIR -60 202 52 219 305 43 21 chr3 43885144 43885285 -174151873 - MIR SINE MIR 0 262 119 2111 133 3 0 chr3 43885306 43885614 -174151544 + AluSx SINE Alu 1 309 -3 21 36 0 0 chr3 43886785 43886813 -174150345 + AT_rich Low_complexity Low_complexity 1 28 0 201 94 0 0 chr3 43887150 43887182 -174149976 + (GA)n Simple_repeat Simple_repeat 1 32 0 1079 194 30 0 chr3 43887945 43888146 -174149012 + MSTB LTR MaLR 220 426 0 1980 145 96 0 chr3 43888159 43888491 -174148667 - THE1B LTR MaLR 0 364 1 10827 109 9 16 chr3 43888491 43889676 -174147482 - THE1B-int LTR MaLR 0 1580 407 1680 112 4 4 chr3 43889676 43889917 -174147241 - AluSg/x SINE Alu 0 310 70 10827 109 9 16 chr3 43889917 43890321 -174146837 - THE1B-int LTR MaLR -1173 407 2 2179 128 73 14 chr3 43890322 43890666 -174146492 - THE1B LTR MaLR 0 364 1 379 261 0 0 chr3 43890733 43890821 -174146337 + MER76 LTR ERV 317 404 -284 737 203 12 0 chr3 43891386 43891549 -174145609 - L1MB5 LINE L1 -8 6166 6002 2871 195 26 20 chr3 43891557 43892334 -174144824 - L1MB5 LINE L1 -280 5894 5115 237 315 69 31 chr3 43892913 43893043 -174144115 + MIR SINE MIR 2 136 -126 217 83 62 21 chr3 43893133 43893166 -174143992 + T-rich Low_complexity Low_complexity 5 42 -12 7418 32 4 0 chr3 43893166 43894446 -174142712 - L1PA3 LINE L1 -3 6152 4869 217 83 62 21 chr3 43894446 43894460 -174142698 + T-rich Low_complexity Low_complexity 42 54 0 21 0 0 0 chr3 43895035 43895056 -174142102 + AT_rich Low_complexity Low_complexity 1 21 0 2214 97 6 10 chr3 43895793 43896104 -174141054 + AluY SINE Alu 1 310 -1 207 0 0 0 chr3 43896799 43896822 -174140336 + (A)n Simple_repeat Simple_repeat 1 23 0 1159 196 45 54 chr3 43897418 43897749 -174139409 - L1MB7 LINE L1 -102 6082 5755 1017 263 83 23 chr3 43897767 43897843 -174139315 + L1M4 LINE L1 4844 4914 -1232 1701 173 47 36 chr3 43897843 43898202 -174138956 - MLT1A1 LTR MaLR -2 363 1 1017 263 83 23 chr3 43898202 43898653 -174138505 + L1M4 LINE L1 4914 5403 -743 302 114 19 152 chr3 43899178 43899283 -174137875 - LTR37B LTR ERV1 -179 289 199 282 263 82 23 chr3 43899525 43899696 -174137462 - L1ME3A LINE L1 -208 5962 5782 238 239 0 30 chr3 43899790 43899857 -174137301 - MLT1H LTR MaLR -377 172 108 220 303 0 0 chr3 43900054 43900120 -174137038 - MIR SINE MIR -108 154 89 1244 295 13 49 chr3 43901857 43902389 -174134769 - HERVL LTR ERVL -1324 4440 3928 364 348 17 21 chr3 43902426 43902659 -174134499 - HERVL LTR ERVL -3967 1687 1456 189 195 0 0 chr3 43903142 43903183 -174133975 + GA-rich Low_complexity Low_complexity 1 41 0 258 364 14 7 chr3 43904102 43904242 -174132916 - HERVL LTR ERVL -5064 700 560 189 107 0 0 chr3 43904269 43904297 -174132861 + (CA)n Simple_repeat Simple_repeat 2 29 0 22 80 0 0 chr3 43904965 43905015 -174132143 + AT_rich Low_complexity Low_complexity 1 50 0 257 224 13 0 chr3 43905834 43905910 -174131248 + (TA)n Simple_repeat Simple_repeat 1 77 0 279 156 49 0 chr3 43905925 43906047 -174131111 + (TA)n Simple_repeat Simple_repeat 2 129 0 24 0 0 0 chr3 43906919 43906943 -174130215 + GC_rich Low_complexity Low_complexity 1 24 0 2404 185 20 13 chr3 43907043 43908051 -174129107 - L1M2 LINE L1 -537 5763 4746 2022 179 75 2 chr3 43908156 43908593 -174128565 + Tigger2 DNA MER2_type 2249 2717 -1 2048 181 24 9 chr3 43908840 43909265 -174127893 - L1MA6 LINE L1 -1 6299 5869 1623 178 64 0 chr3 43909831 43910112 -174127046 + AluSx SINE Alu 1 299 -13 611 162 204 21 chr3 43910117 43910308 -174126850 - MER5C DNA MER1_type -1 323 98 956 132 7 0 chr3 43910930 43911082 -174126076 + LTR9 LTR ERV1 460 612 0 1358 153 80 49 chr3 43911093 43911381 -174125777 - AluSg SINE Alu -13 297 1 186 43 0 0 chr3 43911816 43911839 -174125319 + (A)n Simple_repeat Simple_repeat 1 23 0 24 0 0 0 chr3 43912450 43912474 -174124684 + GC_rich Low_complexity Low_complexity 1 24 0 1883 109 10 10 chr3 43912827 43913130 -174124028 + L1MA3 LINE L1 5797 6099 -206 923 176 45 15 chr3 43913130 43913329 -174123829 + MSTA LTR MaLR 1 205 -223 257 200 29 0 chr3 43914066 43914136 -174123022 + CT-rich Low_complexity Low_complexity 1 72 0 1657 172 19 16 chr3 43914136 43914444 -174122714 - AluSx SINE Alu -3 309 1 207 370 7 44 chr3 43914459 43914594 -174122564 + MER5A DNA MER1_type 56 185 -4 21 0 0 0 chr3 43915885 43915906 -174121252 + GC_rich Low_complexity Low_complexity 1 21 0 1904 117 0 0 chr3 43916434 43916700 -174120458 + AluSg1 SINE Alu 14 279 -30 293 209 22 55 chr3 43916981 43917072 -174120086 - L2 LINE L2 0 3313 3226 27 35 0 0 chr3 43917189 43917218 -174119940 + GC_rich Low_complexity Low_complexity 1 29 0 729 121 0 17 chr3 44018665 44018781 -174018377 + AluJb SINE Alu 199 312 0 22 0 0 0 chr3 44019334 44019356 -174017802 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 44019591 44019613 -174017545 + AT_rich Low_complexity Low_complexity 1 22 0 41684 43 4 0 chr3 44019880 44025777 -174011381 + L1PA4 LINE L1 228 6147 -8 1619 231 67 62 chr3 44025784 44026511 -174010647 - MER69 DNA AcHobo -150 2376 1646 2230 128 0 0 chr3 44026563 44026869 -174010289 - AluSq SINE Alu -7 306 1 323 297 25 17 chr3 44027933 44028051 -174009107 - MLT1J LTR MaLR -70 441 323 821 313 117 32 chr3 44028065 44028116 -174009042 + MLT1H1 LTR MaLR 9 54 -501 2225 116 0 0 chr3 44028116 44028417 -174008741 + AluSx SINE Alu 1 301 -11 821 313 117 32 chr3 44028417 44028863 -174008295 + MLT1H1 LTR MaLR 54 548 -7 728 256 58 68 chr3 44028870 44029178 -174007980 - MLT1J LTR MaLR -202 309 5 1621 264 84 7 chr3 44029273 44029727 -174007431 - MLT1E2 LTR MaLR -1 625 137 22 35 0 0 chr3 44030608 44030637 -174006521 + AT_rich Low_complexity Low_complexity 1 29 0 212 348 52 15 chr3 44030884 44031019 -174006139 - L2 LINE L2 -183 3089 2950 221 333 50 8 chr3 44031724 44031844 -174005314 + L3b LINE CR1 1121 1245 -338 225 0 0 0 chr3 44032225 44032250 -174004908 + (TTA)n Simple_repeat Simple_repeat 2 26 0 382 324 52 24 chr3 44032946 44033156 -174004002 + MIR SINE MIR 37 252 -10 223 325 12 0 chr3 44033321 44033401 -174003757 - MIR3 SINE MIR -3 205 125 30 17 8 0 chr3 44033922 44034005 -174003153 + AT_rich Low_complexity Low_complexity 1 37 0 3770 29 0 0 chr3 44034266 44034711 -174002447 + L1PA4 LINE L1 5708 6152 -3 2461 226 8 0 chr3 44036038 44036623 -174000535 + L1 LINE L1 4203 4792 -1354 1026 146 4 2 chr3 44036624 44036864 -174000294 + AluSx SINE Alu 1 290 -22 5387 167 20 17 chr3 44036865 44038213 -173998945 + L1PA16 LINE L1 4800 6157 -9 21 36 0 0 chr3 44038897 44038925 -173998233 + AT_rich Low_complexity Low_complexity 1 28 0 1243 196 21 17 chr3 44039662 44039902 -173997256 - AluJo SINE Alu -36 276 36 206 239 0 0 chr3 44040086 44040132 -173997026 - L2 LINE L2 -6 3266 3221 305 284 13 97 chr3 44041732 44041887 -173995271 + L2 LINE L2 2945 3086 -186 202 283 0 0 chr3 44042034 44042087 -173995071 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 26 0 0 0 chr3 44042283 44042309 -173994849 + AT_rich Low_complexity Low_complexity 1 26 0 691 216 7 0 chr3 44043368 44043516 -173993642 - L1M4 LINE L1 -453 5721 5573 1052 317 30 25 chr3 44043516 44043745 -173993413 - L2 LINE L2 -565 2749 2516 2166 114 0 7 chr3 44043745 44044042 -173993116 + AluSg SINE Alu 1 295 -15 1052 317 30 25 chr3 44044042 44044244 -173992914 - L2 LINE L2 -798 2516 2316 786 303 122 16 chr3 44044246 44044622 -173992536 - MLT1H LTR MaLR -1 548 133 21 36 0 0 chr3 44044701 44044729 -173992429 + AT_rich Low_complexity Low_complexity 1 28 0 199 328 114 8 chr3 44044792 44044923 -173992235 - L2 LINE L2 -1158 2156 2012 212 266 16 47 chr3 44045631 44045695 -173991463 - MIR SINE MIR -31 231 170 623 365 33 16 chr3 44045857 44046161 -173990997 + LTR16C LTR ERVL 183 491 0 8005 150 35 3 chr3 44046434 44048604 -173988554 + L1PA11 LINE L1 3973 6174 0 211 303 92 39 chr3 44048828 44049057 -173988101 - MIR SINE MIR 0 262 12 4151 165 20 37 chr3 44049813 44050678 -173986480 - L1MB2 LINE L1 -2 6169 5320 547 200 9 9 chr3 44050679 44050784 -173986374 - U6 snRNA snRNA 0 107 3 600 292 69 46 chr3 44051412 44051717 -173985441 + L2 LINE L2 2968 3279 -34 277 252 309 0 chr3 44052017 44052140 -173985018 - MER5A DNA MER1_type 0 189 29 378 337 101 46 chr3 44052173 44052648 -173984510 - L2 LINE L2 -669 2645 2145 414 286 125 29 chr3 44053097 44053682 -173983476 + L1MDa LINE L1 2439 3101 -3439 1831 143 3 39 chr3 44053827 44054135 -173983023 + AluSx SINE Alu 1 297 -15 1514 58 0 0 chr3 44054149 44054337 -173982821 - L1PA4 LINE L1 -350 5805 5618 2973 42 0 0 chr3 44054337 44054695 -173982463 + L1PA4 LINE L1 5794 6152 -3 31 44 0 0 chr3 44055465 44055510 -173981648 + AT_rich Low_complexity Low_complexity 1 45 0 1638 162 133 16 chr3 44055807 44056190 -173980968 + MSTA LTR MaLR 1 428 0 519 239 236 19 chr3 44056370 44056633 -173980525 - LTR50 LTR ERVL -475 320 1 607 255 103 94 chr3 44057175 44057602 -173979556 - MLT1H1 LTR MaLR 0 555 125 186 43 0 0 chr3 44058216 44058239 -173978919 + (TTA)n Simple_repeat Simple_repeat 2 24 0 231 287 11 23 chr3 44058504 44058591 -173978567 + L1MEd LINE L1 413 498 -6032 259 328 0 0 chr3 44058947 44059011 -173978147 + (CATG)n Simple_repeat Simple_repeat 3 66 0 203 234 31 0 chr3 44059442 44059506 -173977652 + (TA)n Simple_repeat Simple_repeat 1 66 0 266 268 71 50 chr3 44059583 44059781 -173977377 + L1MEd LINE L1 1442 1643 -4887 347 255 61 106 chr3 44059795 44059995 -173977163 + L1MEd LINE L1 1623 1809 -4731 1941 133 30 0 chr3 44059995 44060296 -173976862 + AluSx SINE Alu 1 310 -2 347 255 61 106 chr3 44060296 44060359 -173976799 + L1MEd LINE L1 1809 1873 -4667 304 230 61 31 chr3 44060767 44060983 -173976175 - L1MCc LINE L1 -4922 1501 1393 23 0 0 0 chr3 44061632 44061655 -173975503 + AT_rich Low_complexity Low_complexity 1 23 0 250 219 16 16 chr3 44061725 44061789 -173975369 - L1M LINE L1 -763 5415 5352 333 68 0 0 chr3 44061805 44061849 -173975309 + (TA)n Simple_repeat Simple_repeat 2 45 0 491 334 68 19 chr3 44061906 44062424 -173974734 - L1M4 LINE L1 -906 5240 4698 273 250 22 11 chr3 44062487 44062579 -173974579 - L1ME3 LINE L1 -7 6155 6063 294 29 0 0 chr3 44062596 44062631 -173974527 + (CA)n Simple_repeat Simple_repeat 2 36 0 475 301 88 72 chr3 44062707 44063013 -173974145 + MLT1H LTR MaLR 62 372 -177 547 285 43 66 chr3 44063304 44063494 -173973664 - L1M4 LINE L1 -1692 4454 4274 4320 28 0 0 chr3 44063494 44064002 -173973156 + L1PA5 LINE L1 5636 6143 -11 547 285 43 66 chr3 44064002 44064158 -173973000 - L1M4 LINE L1 -1872 4274 4116 371 316 16 37 chr3 44064166 44064353 -173972805 - L1M4 LINE L1 -2102 4044 3862 468 271 98 43 chr3 44064753 44065355 -173971803 - L1M4 LINE L1 -2979 3167 2533 424 259 35 7 chr3 44065404 44065547 -173971611 + L1MA10 LINE L1 6184 6330 -4 278 227 82 0 chr3 44065543 44065640 -173971518 + L1M4 LINE L1 3840 3944 -2202 * 216 67 0 0 chr3 44065720 44065750 -173971408 + (CA)n Simple_repeat Simple_repeat 2 31 0 662 260 31 0 chr3 44065962 44066158 -173971000 + MER105 DNA DNA 1 202 -2 24 32 0 0 chr3 44066524 44066555 -173970603 + AT_rich Low_complexity Low_complexity 1 31 0 2581 64 0 0 chr3 44067008 44067319 -173969839 - AluY SINE Alu 0 311 1 23 0 0 0 chr3 44067392 44067415 -173969743 + AT_rich Low_complexity Low_complexity 1 23 0 278 294 172 31 chr3 44067418 44067744 -173969414 - MLT1L LTR MaLR -27 588 217 860 235 48 118 chr3 44067873 44068290 -173968868 + MSTD LTR MaLR 9 396 0 351 226 89 16 chr3 44068482 44068606 -173968552 + MER94 DNA DNA 2 134 0 378 355 43 0 chr3 44068947 44069133 -173968025 + L2 LINE L2 3120 3313 0 9204 216 23 55 chr3 44069559 44071685 -173965473 + L1M2 LINE L1 3 2060 -4789 22089 189 17 17 chr3 44071688 44075281 -173961877 + L1PA11 LINE L1 2 3592 -4020 180 0 0 0 chr3 44075281 44075301 -173961857 + (CAA)n Simple_repeat Simple_repeat 2 21 0 22089 189 17 17 chr3 44075301 44075790 -173961368 + L1PA11 LINE L1 3592 4079 -3533 2105 147 0 0 chr3 44075790 44076090 -173961068 + AluSx SINE Alu 1 300 -12 22089 189 17 17 chr3 44076090 44078262 -173958896 + L1PA11 LINE L1 4079 7612 0 4313 196 42 33 chr3 44078237 44079483 -173957675 + L1M2 LINE L1 2044 3276 -3572 * 1592 195 0 29 chr3 44079483 44079791 -173957367 + AluJb SINE Alu 4 302 -10 4313 196 42 33 chr3 44079791 44079946 -173957212 + L1M2 LINE L1 3276 3428 -3420 1951 177 0 0 chr3 44079946 44080246 -173956912 - AluSx SINE Alu -12 300 1 4313 196 42 33 chr3 44080246 44080579 -173956579 + L1M2 LINE L1 3428 3792 -3056 21 36 0 0 chr3 44080599 44080627 -173956531 + AT_rich Low_complexity Low_complexity 1 28 0 361 320 176 29 chr3 44080772 44081453 -173955705 + L1M4 LINE L1 2678 3458 -2688 24 0 0 0 chr3 44081456 44081480 -173955678 + AT_rich Low_complexity Low_complexity 1 24 0 625 222 94 11 chr3 44081684 44081769 -173955389 - MER3 DNA MER1_type -1 208 131 2132 91 33 26 chr3 44081769 44082076 -173955082 - AluSx SINE Alu -1 311 3 625 222 94 11 chr3 44082076 44082170 -173954988 - MER3 DNA MER1_type -78 131 14 230 241 35 0 chr3 44082397 44082455 -173954703 - MIR SINE MIR -118 144 85 233 280 0 0 chr3 44082867 44082917 -173954241 + L2 LINE L2 3210 3259 -13 252 77 0 0 chr3 44083164 44083203 -173953955 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1779 143 68 3 chr3 44083927 44084248 -173952910 - AluSq SINE Alu 0 340 1 248 263 27 104 chr3 44085146 44085309 -173951849 - MIR SINE MIR -66 196 38 186 304 18 0 chr3 44086043 44086099 -173951059 - MIR SINE MIR -120 142 86 238 361 24 0 chr3 44086348 44086431 -173950727 - L3 LINE CR1 -27 1550 1466 2384 92 0 0 chr3 44087436 44087741 -173949417 + AluSg SINE Alu 1 305 -5 351 0 0 0 chr3 44087757 44087796 -173949362 + (TG)n Simple_repeat Simple_repeat 2 40 0 232 283 162 0 chr3 44089830 44089929 -173947229 + MIR3 SINE MIR 55 169 -39 1044 213 9 32 chr3 44089952 44090173 -173946985 - MER20 DNA MER1_type 0 219 4 2000 131 3 14 chr3 44090911 44091202 -173945956 - AluSx SINE Alu -24 288 1 318 206 0 0 chr3 44092218 44092291 -173944867 - L1MB8 LINE L1 -13 6165 6093 3978 208 26 27 chr3 44092303 44092416 -173944742 - L1MB4 LINE L1 0 6180 6068 2104 138 7 0 chr3 44092416 44092721 -173944437 - AluSx SINE Alu -5 307 1 3978 208 26 27 chr3 44092721 44093602 -173943556 - L1MB4 LINE L1 -112 6068 5202 2669 145 25 0 chr3 44093602 44094051 -173943107 - L1PB3 LINE L1 -5 6149 5690 3978 208 26 27 chr3 44094051 44094128 -173943030 - L1MB4 LINE L1 -978 5202 5126 888 271 27 9 chr3 44094460 44094685 -173942473 - L1M4b LINE L1 -6619 240 12 185 361 68 45 chr3 44096494 44096627 -173940531 - L2 LINE L2 0 3272 3137 468 0 0 0 chr3 44096638 44096690 -173940468 + (CA)n Simple_repeat Simple_repeat 1 52 0 5942 29 0 0 chr3 44097767 44098501 -173938657 + L1PA3 LINE L1 5444 6177 0 457 253 11 68 chr3 44100093 44100283 -173936875 + MER96B DNA MER1_type? 1 179 -238 311 335 88 29 chr3 44101569 44101978 -173935180 + HAL1 LINE L1 1208 1640 -867 2029 136 3 0 chr3 44102020 44102321 -173934837 - AluSg SINE Alu -8 302 1 327 248 21 28 chr3 44102452 44102736 -173934422 + (CAATA)n Simple_repeat Simple_repeat 1 281 0 320 294 70 7 chr3 44102916 44103059 -173934099 + HAL1b LINE L1 760 911 -437 181 57 57 0 chr3 44103255 44103290 -173933868 + (TA)n Simple_repeat Simple_repeat 1 37 0 2782 142 29 0 chr3 44104168 44104620 -173932538 + LTR24 LTR ERV1 3 467 0 2020 139 0 7 chr3 44105087 44105397 -173931761 - AluSq SINE Alu -5 308 1 37 23 0 0 chr3 44105487 44105531 -173931627 + AT_rich Low_complexity Low_complexity 1 44 0 30 27 0 0 chr3 44105626 44105663 -173931495 + AT_rich Low_complexity Low_complexity 1 37 0 213 154 0 0 chr3 44106353 44106392 -173930766 + (TG)n Simple_repeat Simple_repeat 2 40 0 511 237 70 23 chr3 44106502 44106638 -173930520 + MER5B DNA MER1_type 4 129 -49 2079 135 3 0 chr3 44107723 44108026 -173929132 + AluSg SINE Alu 4 307 -3 1927 157 25 16 chr3 44108586 44108950 -173928208 + LTR23 LTR ERV1 71 437 0 203 288 34 17 chr3 44109383 44109442 -173927716 - MIR3 SINE MIR -41 167 108 2040 110 0 31 chr3 44110566 44110907 -173926251 + AluSg SINE Alu 1 332 0 239 222 62 12 chr3 44111156 44111237 -173925921 + L1ME LINE L1 3875 3959 -2187 182 219 24 0 chr3 44111472 44111513 -173925645 + L2 LINE L2 3186 3227 -86 445 291 102 55 chr3 44112376 44112720 -173924438 + L1ME LINE L1 5296 5655 -466 376 292 125 16 chr3 44113702 44113894 -173923264 - MLT1L LTR MaLR -221 394 182 22 70 0 0 chr3 44114188 44114231 -173922927 + AT_rich Low_complexity Low_complexity 1 43 0 266 350 25 17 chr3 44115609 44115729 -173921429 - MIR SINE MIR -15 247 127 2111 194 84 98 chr3 44115748 44116485 -173920673 - LTR8A LTR ERV1 0 727 1 1117 289 23 3 chr3 44116487 44116792 -173920366 - HUERS-P1 LTR ERV1 -1 6262 5952 2838 155 2 2 chr3 44116897 44117513 -173919645 - L1PA14 LINE L1 -700 5451 4842 5175 90 3 4 chr3 44117514 44118235 -173918923 + L1PA14 LINE L1 5438 6157 -4 5581 206 111 109 chr3 44118288 44119462 -173917696 - HUERS-P1 LTR ERV1 -411 5852 4681 851 195 30 0 chr3 44119462 44119631 -173917527 + FRAM SINE Alu 1 173 -3 5581 206 111 109 chr3 44119631 44121037 -173916121 - HUERS-P1 LTR ERV1 -1582 4681 3101 1119 288 121 33 chr3 44121263 44121449 -173915709 - MLT1G LTR MaLR -24 566 398 2221 183 39 7 chr3 44121449 44121860 -173915298 - MSTB LTR MaLR -2 424 1 1119 288 121 33 chr3 44121860 44122229 -173914929 - MLT1G LTR MaLR -192 398 1 2714 96 0 0 chr3 44122602 44122966 -173914192 - THE1B LTR MaLR 0 364 1 264 252 79 47 chr3 44123462 44123589 -173913569 - Charlie8 DNA MER1_type -2212 205 75 509 354 63 67 chr3 44124331 44124868 -173912290 - L1MC/D LINE L1 -1988 5820 5286 3105 225 76 36 chr3 44124930 44126158 -173911000 - L1MA6 LINE L1 -10 6290 5019 3141 205 20 10 chr3 44126178 44126870 -173910288 - L1MA6 LINE L1 -1701 4445 3747 487 196 0 11 chr3 44126871 44126963 -173910195 + Tigger2a DNA MER2_type 1 91 -343 207 0 0 0 chr3 44126994 44127017 -173910141 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 438 69 0 0 chr3 44127016 44127074 -173910084 + (TA)n Simple_repeat Simple_repeat 1 58 0 1717 200 47 6 chr3 44127101 44127441 -173909717 + Tigger2a DNA MER2_type 91 444 0 5030 227 30 17 chr3 44127478 44128886 -173908272 - L1MA6 LINE L1 -2468 3678 2253 2197 157 19 11 chr3 44128896 44129271 -173907887 - Tigger1 DNA MER2_type -1993 425 48 34 72 0 0 chr3 44129334 44129403 -173907755 + AT_rich Low_complexity Low_complexity 1 69 0 534 292 101 29 chr3 44130258 44130962 -173906196 + L1ME LINE L1 717 1527 -4734 1018 309 40 13 chr3 44131078 44131700 -173905458 + L1ME LINE L1 3140 3778 -2302 * 1453 219 156 11 chr3 44131693 44132132 -173905026 + L1ME3A LINE L1 5654 6154 -10 22 70 0 0 chr3 44132913 44132956 -173904202 + AT_rich Low_complexity Low_complexity 1 43 0 201 182 0 0 chr3 44134550 44134583 -173902575 + T-rich Low_complexity Low_complexity 6 38 0 474 75 0 0 chr3 44135516 44135583 -173901575 + (ATG)n Simple_repeat Simple_repeat 2 68 0 501 203 14 7 chr3 44136218 44136366 -173900792 + GA-rich Low_complexity Low_complexity 3 151 0 1256 186 74 35 chr3 44136423 44136735 -173900423 - MER33 DNA MER1_type 0 324 1 693 241 123 6 chr3 44136735 44136905 -173900253 + LTR16A1 LTR ERVL 265 454 -3 432 293 153 0 chr3 44138087 44138237 -173898921 + MIR3 SINE MIR 36 208 0 206 208 83 0 chr3 44138387 44138435 -173898723 + MIR SINE MIR 128 179 -83 247 353 29 29 chr3 44139844 44139980 -173897178 - L2 LINE L2 0 3272 3137 309 318 71 56 chr3 44140284 44140482 -173896676 + MIR SINE MIR 2 202 -60 1668 222 34 49 chr3 44141037 44141506 -173895652 - MLT1C LTR MaLR 0 467 6 23 33 0 0 chr3 44141897 44141927 -173895231 + AT_rich Low_complexity Low_complexity 1 30 0 245 318 68 11 chr3 44142572 44142660 -173894498 + L2 LINE L2 2889 2981 -291 24 0 0 0 chr3 44142714 44142738 -173894420 + AT_rich Low_complexity Low_complexity 1 24 0 271 263 29 44 chr3 44142955 44143092 -173894066 - MLT1L LTR MaLR -296 319 185 180 97 0 0 chr3 44143425 44143456 -173893702 + (TG)n Simple_repeat Simple_repeat 2 32 0 252 119 356 0 chr3 44143470 44143529 -173893629 - MADE1 DNA Mariner 0 80 1 580 282 92 0 chr3 44143766 44143940 -173893218 + MER3 DNA MER1_type 15 204 -5 214 258 299 0 chr3 44144738 44144835 -173892323 + MIR SINE MIR 81 206 -56 27 49 0 0 chr3 44147167 44147208 -173889950 + AT_rich Low_complexity Low_complexity 1 41 0 538 235 39 26 chr3 44147818 44147971 -173889187 + MIR SINE MIR 69 223 -39 338 272 103 58 chr3 44148400 44148661 -173888497 + L1MC2 LINE L1 1127 1399 -5235 199 128 26 39 chr3 44148665 44148677 -173888481 + (TA)n Simple_repeat Simple_repeat 1 12 -65 590 88 0 0 chr3 44148677 44148757 -173888401 + MADE1 DNA Mariner 1 80 0 199 128 26 39 chr3 44148757 44148822 -173888336 + (TA)n Simple_repeat Simple_repeat 12 77 0 3099 250 30 3 chr3 44148824 44149704 -173887454 + L1MC2 LINE L1 4954 5856 -788 3875 185 27 28 chr3 44149710 44150152 -173887006 + L1MC2 LINE L1 5944 6385 -457 2102 127 38 24 chr3 44150152 44150522 -173886636 - THE1C LTR MaLR 0 375 1 3875 185 27 28 chr3 44150522 44150970 -173886188 + L1MC2 LINE L1 6385 6833 -9 300 332 28 65 chr3 44150971 44151188 -173885970 + L1ME LINE L1 1297 1505 -5037 529 296 72 35 chr3 44151235 44151583 -173885575 + L1ME LINE L1 1649 2009 -4816 300 258 22 0 chr3 44151718 44151807 -173885351 - MIR SINE MIR 0 262 172 436 208 8 67 chr3 44151807 44151927 -173885231 - MER63 DNA MER1_type -97 739 1 186 43 0 0 chr3 44152461 44152484 -173884674 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 338 276 188 21 chr3 44152924 44153116 -173884042 + MIR SINE MIR 25 248 -14 411 349 13 7 chr3 44153301 44153453 -173883705 - MER5A DNA MER1_type -1 188 36 246 369 34 13 chr3 44153319 44153468 -173883690 + MER5A DNA MER1_type 32 183 -6 * 732 256 44 0 chr3 44153795 44153955 -173883203 + MER45A DNA AcHobo 1 167 -11 247 358 33 0 chr3 44154869 44154989 -173882169 + MIR SINE MIR 49 172 -90 2295 84 0 0 chr3 44155420 44155716 -173881442 + AluY SINE Alu 1 296 -15 899 174 20 61 chr3 44155862 44156058 -173881100 - MER5A DNA MER1_type -1 188 1 273 98 0 0 chr3 44156593 44156634 -173880524 + (TG)n Simple_repeat Simple_repeat 2 42 0 407 283 113 70 chr3 44157938 44158398 -173878760 + HAL1 LINE L1 875 1354 -1153 291 393 27 9 chr3 44158401 44158620 -173878538 + L1MEc LINE L1 149 371 -6025 320 322 7 13 chr3 44158980 44159132 -173878026 + L1MEc LINE L1 705 855 -5541 1921 260 63 54 chr3 44159178 44159977 -173877181 + L1MEc LINE L1 2024 2805 -3410 1759 170 97 30 chr3 44159977 44160378 -173876780 - MSTC LTR MaLR 0 428 1 1921 260 63 54 chr3 44160378 44161133 -173876025 + L1MEc LINE L1 2805 3552 -2663 1474 329 66 11 chr3 44161138 44161701 -173875457 + L1PA13 LINE L1 19 612 -6175 10523 245 37 14 chr3 44161977 44163137 -173874021 + L1PA13 LINE L1 1341 2473 -4324 1991 117 6 50 chr3 44163137 44163454 -173873704 - AluSq SINE Alu -10 303 1 10523 245 37 14 chr3 44163454 44166031 -173871127 + L1PA13 LINE L1 2473 5166 -1631 264 272 174 10 chr3 44166050 44166245 -173870913 + L1MEc LINE L1 4496 4722 -1493 357 226 68 55 chr3 44166311 44166457 -173870701 + L1MEc LINE L1 4925 5072 -1143 23 33 0 0 chr3 44166541 44166571 -173870587 + AT_rich Low_complexity Low_complexity 1 30 0 1748 201 28 42 chr3 44166657 44167056 -173870102 - Charlie1 DNA MER1_type 0 2761 2369 1403 205 16 68 chr3 44167056 44167286 -173869872 - MLT1A1 LTR MaLR 0 365 161 2264 117 0 0 chr3 44167286 44167595 -173869563 - AluSg SINE Alu -1 309 1 1403 205 16 68 chr3 44167595 44167749 -173869409 - MLT1A1 LTR MaLR -204 161 1 1748 201 28 42 chr3 44167749 44167851 -173869307 - Charlie1 DNA MER1_type -392 2369 2267 822 227 23 0 chr3 44167853 44168025 -173869133 + FRAM SINE Alu 1 174 -2 605 204 22 0 chr3 44168029 44168166 -173868992 - Charlie1 DNA MER1_type -483 2278 2139 513 331 33 18 chr3 44168948 44169223 -173867935 - MLT1K LTR MaLR -54 534 256 738 124 0 0 chr3 44170050 44170171 -173866987 + (GGGA)n Simple_repeat Simple_repeat 4 124 0 189 121 0 0 chr3 44170587 44170620 -173866538 + (CA)n Simple_repeat Simple_repeat 2 34 0 318 286 67 8 chr3 44171520 44171639 -173865519 + MLT1H LTR MaLR 1 126 -423 1617 212 11 72 chr3 44171685 44172142 -173865016 + MER63B DNA MER1_type 2 430 -6 907 278 77 84 chr3 44173245 44173865 -173863293 + L2 LINE L2 2692 3313 0 215 118 0 0 chr3 44175172 44175206 -173861952 + MIR SINE MIR 203 236 -26 267 321 224 28 chr3 44175277 44175567 -173861591 - L2 LINE L2 -571 2743 2397 2663 39 0 3 chr3 44176336 44176648 -173860510 + AluY SINE Alu 1 311 0 274 305 12 0 chr3 44176662 44176744 -173860414 - L2 LINE L2 -596 2718 2636 1996 148 3 0 chr3 44176787 44177084 -173860074 + AluSx SINE Alu 1 298 -14 21 36 0 0 chr3 44177084 44177112 -173860046 + AT_rich Low_complexity Low_complexity 1 28 0 419 294 239 6 chr3 44177314 44177494 -173859664 + MIR SINE MIR 41 262 0 275 281 50 38 chr3 44178336 44178496 -173858662 + MIR3 SINE MIR 40 201 -7 377 359 0 0 chr3 44178893 44179010 -173858148 + L2 LINE L2 3197 3313 0 786 311 111 37 chr3 44179098 44179558 -173857600 - MLT1G LTR MaLR 0 590 97 21 57 0 0 chr3 44179848 44179883 -173857275 + AT_rich Low_complexity Low_complexity 1 35 0 386 127 14 0 chr3 44180390 44180461 -173856697 + (CA)n Simple_repeat Simple_repeat 1 72 0 23 0 0 0 chr3 44180780 44180803 -173856355 + AT_rich Low_complexity Low_complexity 1 23 0 215 329 4 123 chr3 44181340 44181408 -173855750 - MIR SINE MIR -59 203 129 2412 85 3 0 chr3 44181408 44181715 -173855443 - AluY SINE Alu -3 308 1 215 329 4 123 chr3 44181715 44181874 -173855284 - MIR SINE MIR -133 129 3 1141 203 22 4 chr3 44183422 44183654 -173853504 - MER96B DNA MER1_type? -181 236 1 180 0 0 0 chr3 44183688 44183708 -173853450 + (T)n Simple_repeat Simple_repeat 1 20 0 330 280 34 0 chr3 44184836 44184954 -173852204 + MER103 DNA DNA 1 122 -44 2341 115 56 8 chr3 44184973 44185330 -173851828 - THE1C LTR MaLR 0 375 2 10099 128 32 7 chr3 44185331 44186728 -173850430 - THE1C-int LTR MaLR 0 1580 139 1997 157 49 76 chr3 44186728 44187174 -173849984 + MER61C LTR ERV1 1 434 0 10099 128 32 7 chr3 44187174 44187317 -173849841 - THE1C-int LTR MaLR -1441 139 1 2554 120 5 8 chr3 44187317 44187693 -173849465 - THE1C LTR MaLR 0 375 1 255 152 0 0 chr3 44188769 44188815 -173848343 + (AATTG)n Simple_repeat Simple_repeat 3 48 0 191 254 15 60 chr3 44189687 44189754 -173847404 + MIR SINE MIR 79 142 -66 545 380 16 8 chr3 44189770 44190020 -173847138 - MIR SINE MIR -8 254 3 1547 91 0 0 chr3 44190868 44191076 -173846082 - AluY SINE Alu -3 308 101 201 308 132 22 chr3 44191496 44191587 -173845571 - L2 LINE L2 -5 3267 3167 1054 172 23 16 chr3 44191977 44192305 -173844853 + L1PA16 LINE L1 5147 5476 -690 1201 150 13 53 chr3 44192305 44192531 -173844627 + AluJb SINE Alu 87 303 -9 2112 135 7 0 chr3 44192531 44192835 -173844323 + AluSp SINE Alu 1 306 -7 4071 137 27 3 chr3 44192846 44193511 -173843647 + L1PA16 LINE L1 5477 6157 -9 21 36 0 0 chr3 44195237 44195265 -173841893 + AT_rich Low_complexity Low_complexity 1 28 0 553 298 181 19 chr3 44196605 44197024 -173840134 - MLT1H LTR MaLR -2 547 61 1240 204 23 77 chr3 44197646 44198088 -173839070 - Charlie1 DNA MER1_type -1 2760 2343 251 268 0 0 chr3 44198085 44198141 -173839017 - Charlie1 DNA MER1_type -2698 63 8 * 198 268 52 0 chr3 44198942 44199020 -173838138 + MIR SINE MIR 71 147 -61 225 361 96 0 chr3 44199456 44199622 -173837536 - MIR SINE MIR -74 188 7 195 42 0 0 chr3 44199947 44199971 -173837187 + (ATG)n Simple_repeat Simple_repeat 2 25 0 240 393 130 20 chr3 44200808 44201470 -173835688 - L2 LINE L2 -609 2705 1971 517 385 88 18 chr3 44201571 44202312 -173834846 - L2 LINE L2 -522 2792 2000 2217 117 0 0 chr3 44202337 44202644 -173834514 + AluSc SINE Alu 1 307 -2 315 318 82 29 chr3 44203597 44203767 -173833391 + MIR SINE MIR 70 248 -14 28 29 0 0 chr3 44205147 44205182 -173831976 + AT_rich Low_complexity Low_complexity 1 35 0 378 217 0 0 chr3 44205353 44205468 -173831690 + (TA)n Simple_repeat Simple_repeat 1 115 0 281 303 49 37 chr3 44206127 44206289 -173830869 - MIR SINE MIR -50 212 49 363 339 31 26 chr3 44206293 44206485 -173830673 - L2 LINE L2 -1 3312 3120 287 299 124 60 chr3 44207163 44207352 -173829806 + MIR SINE MIR 10 207 -55 2733 136 19 0 chr3 44207643 44208063 -173829095 - MSTA LTR MaLR 0 428 1 198 0 0 0 chr3 44208437 44208459 -173828699 + (TAA)n Simple_repeat Simple_repeat 2 23 0 2889 16 0 0 chr3 44210335 44210653 -173826505 - AluYb8 SINE Alu 0 318 1 197 303 67 106 chr3 44211083 44211291 -173825867 - L3 LINE CR1 -12 1565 1366 369 302 26 68 chr3 44211529 44211721 -173825437 + MIR SINE MIR 42 225 -37 331 248 108 31 chr3 44212739 44212868 -173824290 + MIR SINE MIR 74 212 -50 261 0 0 0 chr3 44212939 44212968 -173824190 + (TG)n Simple_repeat Simple_repeat 2 30 0 603 212 104 37 chr3 44213227 44213468 -173823690 - MER63 DNA MER1_type 0 1062 806 1324 186 156 16 chr3 44213497 44213804 -173823354 + MLT1F1 LTR MaLR 120 469 -98 322 376 28 14 chr3 44214007 44214294 -173822864 - MER89-int LTR ERV1 -3082 3719 3429 27 62 0 0 chr3 44215114 44215162 -173821996 + AT_rich Low_complexity Low_complexity 1 48 0 29 60 0 0 chr3 44215673 44215723 -173821435 + AT_rich Low_complexity Low_complexity 1 50 0 312 27 0 0 chr3 44216997 44217034 -173820124 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 21 36 0 0 chr3 44217919 44217947 -173819211 + AT_rich Low_complexity Low_complexity 1 28 0 237 346 0 19 chr3 44218007 44218111 -173819047 - HAL1 LINE L1 -803 1704 1603 198 380 58 7 chr3 44218114 44218251 -173818907 - L2 LINE L2 -202 3070 2927 324 322 46 54 chr3 44218505 44218766 -173818392 - L2 LINE L2 -616 2698 2440 2224 69 29 0 chr3 44219905 44220180 -173816978 + AluY SINE Alu 21 303 -8 3934 141 9 3 chr3 44220914 44221545 -173815613 + L1PB3 LINE L1 5520 6154 0 21 0 0 0 chr3 44221545 44221566 -173815592 + AT_rich Low_complexity Low_complexity 1 21 0 3523 263 102 92 chr3 44221651 44222012 -173815146 + L2 LINE L2 455 811 -2503 2056 103 32 3 chr3 44222012 44222294 -173814864 - AluSc SINE Alu -19 290 1 3523 263 102 92 chr3 44222294 44222731 -173814427 + L2 LINE L2 811 1242 -2072 1150 199 145 15 chr3 44222731 44222993 -173814165 - AluJo SINE Alu -4 298 3 3523 263 102 92 chr3 44222993 44223590 -173813568 + L2 LINE L2 1242 1832 -1482 326 322 9 9 chr3 44223590 44223705 -173813453 - MER94 DNA DNA -4 130 16 3523 263 102 92 chr3 44223705 44224319 -173812839 + L2 LINE L2 1832 2600 -714 5606 202 48 39 chr3 44224647 44227497 -173809661 - L1MC2 LINE L1 -2 6760 3891 2207 135 19 14 chr3 44227502 44227864 -173809294 + THE1B LTR MaLR 1 364 0 2563 247 94 34 chr3 44227865 44228792 -173808366 - L1MC2 LINE L1 -2825 3739 2756 1496 223 21 116 chr3 44228792 44229362 -173807796 + MLT2B1 LTR ERVL 5 520 0 2563 247 94 34 chr3 44229362 44229675 -173807483 - L1MC2 LINE L1 -3808 2756 2463 3349 200 89 40 chr3 44229694 44231050 -173806108 - L1MC2 LINE L1 -4399 2165 696 2648 196 55 62 chr3 44231050 44231743 -173805415 + LTR8 LTR ERV1 3 690 -1 3349 200 89 40 chr3 44231743 44231830 -173805328 - L1MC2 LINE L1 -5868 696 615 412 301 31 31 chr3 44232645 44232808 -173804350 - L2 LINE L2 -6 3307 3145 180 343 146 19 chr3 44233006 44233219 -173803939 + L2 LINE L2 1854 2093 -1221 592 171 17 25 chr3 44233604 44233845 -173803313 + (TA)n Simple_repeat Simple_repeat 1 239 0 181 245 94 0 chr3 44233848 44233901 -173803257 + L2 LINE L2 3255 3312 -1 269 313 76 30 chr3 44233981 44234112 -173803046 - L2 LINE L2 -3 3269 3133 26 0 0 0 chr3 44235535 44235561 -173801597 + AT_rich Low_complexity Low_complexity 1 26 0 316 59 39 0 chr3 44235884 44235935 -173801223 + (TC)n Simple_repeat Simple_repeat 1 53 0 368 281 100 56 chr3 44235946 44236177 -173800981 - L1ME3A LINE L1 -11 6159 5919 359 278 201 48 chr3 44236283 44236771 -173800387 - L2 LINE L2 -37 3276 2710 2223 84 3 7 chr3 44236771 44237070 -173800088 - AluY SINE Alu -13 298 1 359 278 201 48 chr3 44237070 44237121 -173800037 - L2 LINE L2 -603 2710 2668 273 338 50 7 chr3 44237864 44238003 -173799155 + MIR SINE MIR 47 191 -71 716 146 76 21 chr3 44238770 44238914 -173798244 - MER61B LTR ERV1 0 425 274 287 188 0 0 chr3 44238913 44238961 -173798197 - MER61A LTR ERV1 -295 48 1 * 13702 96 24 50 chr3 44238961 44241119 -173796039 - MER61A-int LTR ERV1 0 5217 3116 323 303 58 13 chr3 44241121 44241276 -173795882 + MIR SINE MIR 39 200 -62 515 130 24 57 chr3 44241277 44241400 -173795758 + L1MA8 LINE L1 6173 6291 0 29 0 0 0 chr3 44241465 44241494 -173795664 + AT_rich Low_complexity Low_complexity 1 29 0 263 368 49 12 chr3 44241575 44241738 -173795420 + MIR3 SINE MIR 40 208 0 203 371 9 19 chr3 44241884 44241989 -173795169 + MIR3 SINE MIR 87 190 -18 536 335 81 70 chr3 44242260 44242816 -173794342 - L2 LINE L2 -705 2609 2048 2282 119 119 8 chr3 44245972 44246357 -173790801 - MSTA LTR MaLR 0 428 1 362 356 23 0 chr3 44247784 44247916 -173789242 - L2 LINE L2 0 3313 3179 201 314 0 0 chr3 44248326 44248377 -173788781 + MIR SINE MIR 201 251 -11 2081 138 0 7 chr3 44248446 44248751 -173788407 - AluSx SINE Alu -9 303 1 1290 246 65 6 chr3 44250784 44251105 -173786053 + L1M3e LINE L1 1 340 -6690 2310 270 77 39 chr3 44251115 44254284 -173782874 + L1M3e LINE L1 1075 3973 -3133 1767 206 60 5 chr3 44254848 44255250 -173781908 - MLT1C LTR MaLR -6 461 38 195 259 247 12 chr3 44255602 44255683 -173781475 - MIR SINE MIR -78 130 31 2169 216 62 41 chr3 44255958 44256671 -173780487 + L1M3e LINE L1 4810 5537 -1569 2008 189 41 14 chr3 44256916 44257333 -173779825 + MSTC LTR MaLR 1 428 0 1228 271 42 31 chr3 44257346 44257771 -173779387 + MSTC-int LTR MaLR 15 444 -1207 1284 242 92 3 chr3 44257773 44258132 -173779026 + MSTC-int LTR MaLR 1255 1645 -6 1717 204 41 6 chr3 44258141 44258485 -173778673 + MSTC LTR MaLR 5 360 -68 492 305 82 44 chr3 44259713 44260094 -173777064 + LTR16C LTR ERVL 73 444 -13 496 100 71 0 chr3 44260255 44260565 -173776593 + (TA)n Simple_repeat Simple_repeat 1 332 0 28 0 0 0 chr3 44261292 44261320 -173775838 + AT_rich Low_complexity Low_complexity 1 28 0 2210 92 11 0 chr3 44262690 44262973 -173774185 + AluSx SINE Alu 1 286 -26 253 210 16 0 chr3 44263000 44263062 -173774096 + GA-rich Low_complexity Low_complexity 2 64 0 1414 249 136 21 chr3 44263661 44264147 -173773011 + MLT1F LTR MaLR 1 542 0 598 303 88 54 chr3 44265026 44265343 -173771815 + MLT2F LTR ERVL 159 486 -177 309 75 0 0 chr3 44265438 44265478 -173771680 + MLT2F LTR ERVL 573 612 -51 1132 238 38 16 chr3 44267554 44267999 -173769159 + L1M4c LINE L1 2234 2689 -3693 13672 140 32 22 chr3 44268057 44270398 -173766760 + Tigger1 DNA MER2_type 55 2418 0 2076 248 83 14 chr3 44270405 44271300 -173765858 + L1M4c LINE L1 2703 3658 -2724 1185 193 26 42 chr3 44271302 44271613 -173765545 + L1M4c LINE L1 3801 4106 -2276 288 122 122 0 chr3 44271610 44271659 -173765499 + L1M4 LINE L1 5523 5577 -607 * 4381 198 6 9 chr3 44271665 44272567 -173764591 - L1 LINE L1 -1609 5956 5058 555 253 34 0 chr3 44272577 44272723 -173764435 - L1 LINE L1 -3571 3994 3844 2014 132 0 30 chr3 44272728 44273031 -173764127 - AluSx SINE Alu -18 294 1 1924 268 59 46 chr3 44273033 44273073 -173764085 - L1 LINE L1 -3857 3708 3670 2200 105 14 0 chr3 44273073 44273369 -173763789 + AluSg SINE Alu 1 300 -10 1924 268 59 46 chr3 44273369 44274976 -173762182 - L1 LINE L1 -3895 3670 2179 * 8646 196 52 6 chr3 44274974 44276592 -173760566 + L1MA2 LINE L1 472 2163 -5402 * 10138 187 13 10 chr3 44276590 44278663 -173758495 + L1MA2 LINE L1 4027 6106 -1459 7393 124 4 1 chr3 44278683 44279979 -173757179 + L1MA2 LINE L1 6424 7723 0 1720 287 31 20 chr3 44280011 44280558 -173756600 - L1 LINE L1 -5720 1776 1224 2721 232 57 52 chr3 44280610 44281591 -173755567 - L1M4 LINE L1 -946 5200 4215 193 366 27 18 chr3 44281618 44281730 -173755428 - L2 LINE L2 -2072 1242 1130 257 0 30 0 chr3 44282575 44282608 -173754550 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 297 290 318 0 chr3 44282911 44283087 -173754071 - MIR SINE MIR -1 261 30 1148 94 6 11 chr3 44283283 44283463 -173753695 - L1PA8 LINE L1 0 6172 5994 5741 68 9 0 chr3 44283463 44284453 -173752705 + L1PA8 LINE L1 4992 5989 -183 420 328 78 10 chr3 44285061 44285253 -173751905 + MIR SINE MIR 1 205 -57 516 263 64 95 chr3 44285641 44286093 -173751065 - L1ME3A LINE L1 -1 6169 5732 694 291 94 40 chr3 44286094 44286668 -173750490 + L1M4 LINE L1 2853 3457 -2689 23 54 0 0 chr3 44287334 44287371 -173749787 + AT_rich Low_complexity Low_complexity 1 37 0 180 0 0 0 chr3 44288035 44288055 -173749103 + (GAA)n Simple_repeat Simple_repeat 2 21 0 557 267 17 40 chr3 44288833 44289009 -173748149 - MLT1H1 LTR MaLR -24 531 360 198 103 0 0 chr3 44289030 44289059 -173748099 + (TC)n Simple_repeat Simple_repeat 2 30 0 705 265 69 87 chr3 44289521 44289635 -173747523 + HAL1 LINE L1 988 1103 -1404 6861 35 2 7 chr3 44289635 44290470 -173746688 + L1PA5 LINE L1 5323 6153 -1 705 265 69 87 chr3 44290470 44290792 -173746366 + HAL1 LINE L1 1103 1416 -1091 333 262 7 55 chr3 44290824 44290969 -173746189 + HAL1 LINE L1 1509 1646 -861 213 283 0 0 chr3 44292129 44292182 -173744976 + (TG)n Simple_repeat Simple_repeat 1 53 0 1254 281 99 22 chr3 44292475 44292980 -173744178 - MLT1H LTR MaLR 0 549 6 291 306 0 9 chr3 44293221 44293329 -173743829 - MIR SINE MIR -57 205 99 212 343 0 0 chr3 44294193 44294260 -173742898 - L2 LINE L2 -219 3053 2987 293 250 16 0 chr3 44294854 44294918 -173742240 - MIR SINE MIR -62 146 82 285 309 154 0 chr3 44295754 44295877 -173741281 - MIR3 SINE MIR -22 186 45 180 0 0 0 chr3 44296266 44296286 -173740872 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1698 58 0 98 chr3 44296337 44296611 -173740547 - L1PA8 LINE L1 -2 6170 5924 227 219 0 78 chr3 44297009 44297073 -173740085 + MIR SINE MIR 110 168 -94 651 274 159 77 chr3 44297184 44297625 -173739533 - MLT1H LTR MaLR 0 549 73 279 0 0 0 chr3 44298898 44298929 -173738229 + (TG)n Simple_repeat Simple_repeat 2 32 0 283 269 19 19 chr3 44299030 44299134 -173738024 + MIR SINE MIR 158 261 -1 288 278 14 0 chr3 44299356 44299428 -173737730 + MIR SINE MIR 180 252 -10 764 163 126 42 chr3 44299618 44299808 -173737350 + L1PB3 LINE L1 5946 6151 -3 783 286 66 66 chr3 44299934 44300312 -173736846 + LTR16A LTR ERVL 64 441 -9 2136 107 0 3 chr3 44300603 44300893 -173736265 - AluSx SINE Alu -19 293 5 26 30 0 0 chr3 44301152 44301185 -173735973 + AT_rich Low_complexity Low_complexity 1 33 0 28 0 0 0 chr3 44301459 44301487 -173735671 + AT_rich Low_complexity Low_complexity 1 28 0 197 132 26 0 chr3 44301712 44301750 -173735408 + (TCTA)n Simple_repeat Simple_repeat 2 40 0 359 273 131 33 chr3 44301752 44302141 -173735017 - L1M4 LINE L1 -3127 3019 2593 340 328 60 22 chr3 44302349 44302532 -173734626 - MER117 DNA MER1_type -6 191 2 591 259 170 25 chr3 44302568 44302850 -173734308 + HAL1b LINE L1 451 773 -575 320 308 0 25 chr3 44303476 44303596 -173733562 + HAL1b LINE L1 839 955 -393 224 268 207 0 chr3 44304021 44304103 -173733055 - L2 LINE L2 -18 3295 3197 38 22 0 0 chr3 44304620 44304665 -173732493 + AT_rich Low_complexity Low_complexity 1 45 0 6207 51 0 0 chr3 44305513 44306298 -173730860 - L1PA4 LINE L1 -4141 2005 1221 27178 38 1 1 chr3 44306298 44310434 -173726724 + L1PA4 LINE L1 2021 6155 0 248 260 83 10 chr3 44310545 44310641 -173726517 + MST-int LTR MaLR 1327 1429 -222 1928 138 0 34 chr3 44310825 44311145 -173726013 + AluSc SINE Alu 1 309 0 745 232 89 12 chr3 44311263 44311509 -173725649 - Zaphod DNA AcHobo -172 3859 3595 * 1610 260 118 48 chr3 44311506 44311827 -173725331 - Zaphod DNA AcHobo -3040 991 694 767 167 58 0 chr3 44311827 44312001 -173725157 + MER53 DNA DNA 4 187 -2 1610 260 118 48 chr3 44312001 44312591 -173724567 - Zaphod DNA AcHobo -3337 694 16 321 227 11 23 chr3 44312658 44312746 -173724412 + MLT1J2 LTR MaLR 72 158 -292 22 35 0 0 chr3 44313091 44313120 -173724038 + AT_rich Low_complexity Low_complexity 1 29 0 1438 272 70 33 chr3 44313258 44313714 -173723444 - MLT1D LTR MaLR -6 499 27 245 197 26 53 chr3 44314221 44314297 -173722861 - L1ME LINE L1 -364 5757 5684 461 254 44 44 chr3 44314371 44314619 -173722539 + L1MEc LINE L1 1956 2203 -4193 1076 171 0 5 chr3 44314788 44314975 -173722183 + L1PA13 LINE L1 4788 4973 -1173 2014 173 52 32 chr3 44314977 44315507 -173721651 + MLT2A2 LTR ERVL 1 550 -4 5214 117 61 3 chr3 44315507 44315565 -173721593 + L1PA13 LINE L1 4968 5021 -1142 2246 79 0 26 chr3 44315565 44315870 -173721288 + AluY SINE Alu 1 297 -14 5214 117 61 3 chr3 44315870 44316962 -173720196 + L1PA13 LINE L1 5021 6161 -2 1113 243 66 6 chr3 44316965 44317315 -173719843 + L1MEc LINE L1 2465 2835 -3380 21 0 0 0 chr3 44318135 44318156 -173719002 + AT_rich Low_complexity Low_complexity 1 21 0 5521 134 33 3 chr3 44318158 44319167 -173717991 - L1PA15 LINE L1 -2 6163 5124 302 303 96 23 chr3 44319302 44319492 -173717666 + L1ME2 LINE L1 5708 5910 -256 1629 213 20 17 chr3 44320098 44320450 -173716708 - MLT1A1 LTR MaLR 0 365 13 276 30 0 0 chr3 44321063 44321096 -173716062 + (CA)n Simple_repeat Simple_repeat 1 33 0 2539 147 33 9 chr3 44321096 44321546 -173715612 - L1PB3 LINE L1 -9 6145 5685 2452 62 3 3 chr3 44321665 44321974 -173715184 - AluY SINE Alu 0 311 3 33 43 0 0 chr3 44322881 44322928 -173714230 + AT_rich Low_complexity Low_complexity 1 47 0 1651 275 59 32 chr3 44323744 44324493 -173712665 + L1ME LINE L1 140 908 -5162 202 137 55 14 chr3 44324636 44324709 -173712449 + (TA)n Simple_repeat Simple_repeat 2 77 0 298 192 64 29 chr3 44324749 44324921 -173712237 + (TA)n Simple_repeat Simple_repeat 1 178 0 338 178 66 26 chr3 44325016 44325168 -173711990 + (TA)n Simple_repeat Simple_repeat 2 159 0 1229 205 13 8 chr3 44325344 44325578 -173711580 + AluJb SINE Alu 1 235 -77 252 180 166 65 chr3 44326416 44326555 -173710603 + L1ME LINE L1 877 1029 -5041 375 106 0 0 chr3 44326738 44326804 -173710354 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 225 0 0 0 chr3 44326821 44326846 -173710312 + (TTG)n Simple_repeat Simple_repeat 3 27 0 1786 117 36 0 chr3 44326846 44327093 -173710065 - AluSx SINE Alu -53 259 4 657 279 102 95 chr3 44327201 44327251 -173709907 + L1ME LINE L1 2224 2272 -3808 1993 149 21 6 chr3 44327251 44327580 -173709578 + MER1B DNA MER1_type 4 337 0 657 279 102 95 chr3 44327580 44328303 -173708855 + L1ME LINE L1 2272 3006 -3074 420 209 157 52 chr3 44328303 44328418 -173708740 + FLAM_A SINE Alu 1 127 -6 657 279 102 95 chr3 44328418 44328530 -173708628 + L1ME LINE L1 3006 3116 -2964 292 309 43 33 chr3 44328668 44328969 -173708189 + L1M4 LINE L1 4477 4780 -1366 285 255 104 28 chr3 44329021 44329127 -173708031 - MIR3 SINE MIR -82 126 13 621 298 33 90 chr3 44329169 44329578 -173707580 - MLT1I LTR MaLR -2 407 25 378 0 0 0 chr3 44330891 44330933 -173706225 + (CA)n Simple_repeat Simple_repeat 2 43 0 334 283 119 92 chr3 44335035 44335485 -173701673 - L1M2 LINE L1 -5473 1376 727 215 273 0 0 chr3 44335799 44335854 -173701304 + (CGGA)n Simple_repeat Simple_repeat 1 55 0 199 155 14 28 chr3 44336068 44336139 -173701019 + A-rich Low_complexity Low_complexity 1 70 0 21 0 0 0 chr3 44340899 44340920 -173696238 + AT_rich Low_complexity Low_complexity 1 21 0 200 244 61 37 chr3 44343534 44343616 -173693542 + MIR SINE MIR 48 131 -131 421 271 65 0 chr3 44343640 44343747 -173693411 + MIR SINE MIR 59 172 -90 210 289 19 0 chr3 44344941 44344993 -173692165 + L2 LINE L2 3215 3267 -5 232 307 27 13 chr3 44347194 44347269 -173689889 + MIR3 SINE MIR 130 205 -3 343 236 163 24 chr3 44347406 44347529 -173689629 + MIR SINE MIR 8 147 -115 184 274 170 28 chr3 44349480 44349586 -173687572 + MIR SINE MIR 48 168 -94 26 30 0 0 chr3 44350747 44350780 -173686378 + AT_rich Low_complexity Low_complexity 1 33 0 180 200 0 0 chr3 44351078 44351128 -173686030 + (TA)n Simple_repeat Simple_repeat 2 51 0 658 210 138 6 chr3 44351644 44351811 -173685347 - MER5A DNA MER1_type 0 189 1 26 30 0 0 chr3 44351938 44351971 -173685187 + AT_rich Low_complexity Low_complexity 1 33 0 1591 264 74 4 chr3 44352186 44352684 -173684474 + L1MD2 LINE L1 5655 6162 0 180 277 161 66 chr3 44353055 44353192 -173683966 - L3 LINE CR1 -48 1529 1380 765 283 72 9 chr3 44353328 44353551 -173683607 - MIR SINE MIR -2 260 24 264 191 15 15 chr3 44355019 44355087 -173682071 + MER112 DNA MER1_type 13 80 -180 28 61 0 0 chr3 44355186 44355235 -173681923 + AT_rich Low_complexity Low_complexity 1 49 0 274 356 40 0 chr3 44355310 44355411 -173681747 - L2 LINE L2 -15 3257 3153 389 276 64 26 chr3 44357599 44357755 -173679403 + MIR SINE MIR 68 229 -33 1013 253 34 48 chr3 44358257 44358609 -173678549 - LTR16A LTR ERVL 0 450 104 1427 177 166 33 chr3 44358615 44358994 -173678164 + L1MA4A LINE L1 5855 6279 -24 1840 119 62 12 chr3 44360016 44360336 -173676822 - L1MA6 LINE L1 0 6300 5965 207 297 109 20 chr3 44362873 44362974 -173674184 + MIR SINE MIR 33 142 -120 1319 62 5 5 chr3 44363695 44363905 -173673253 + (GAA)n Simple_repeat Simple_repeat 1 210 0 28 0 0 0 chr3 44364073 44364101 -173673057 + AT_rich Low_complexity Low_complexity 1 28 0 330 87 0 0 chr3 44364973 44365019 -173672139 + (TTCC)n Simple_repeat Simple_repeat 4 49 0 435 244 102 31 chr3 44368419 44368546 -173668612 - L2 LINE L2 0 3313 3178 372 22 0 0 chr3 44371644 44371689 -173665469 + (ATG)n Simple_repeat Simple_repeat 2 46 0 200 259 37 0 chr3 44371954 44372008 -173665150 + L2 LINE L2 3257 3312 -1 234 62 0 0 chr3 44373125 44373157 -173664001 + (CA)n Simple_repeat Simple_repeat 2 33 0 305 184 10 31 chr3 44376553 44376651 -173660507 + CT-rich Low_complexity Low_complexity 5 100 0 192 77 0 0 chr3 44378604 44378630 -173658528 + (TC)n Simple_repeat Simple_repeat 1 26 0 213 94 0 0 chr3 44378656 44378688 -173658470 + (TTTTA)n Simple_repeat Simple_repeat 3 34 0 22 0 0 0 chr3 44379099 44379121 -173658037 + AT_rich Low_complexity Low_complexity 1 22 0 198 143 0 0 chr3 44379532 44379567 -173657591 + (TTTCC)n Simple_repeat Simple_repeat 1 35 0 25 31 0 0 chr3 44380288 44380320 -173656838 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr3 44381700 44381721 -173655437 + AT_rich Low_complexity Low_complexity 1 21 0 43 20 0 0 chr3 44382872 44382922 -173654236 + AT_rich Low_complexity Low_complexity 1 50 0 180 0 0 0 chr3 44384433 44384453 -173652705 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 214 114 23 23 chr3 44385745 44385789 -173651369 + (AAATG)n Simple_repeat Simple_repeat 1 44 0 468 286 60 30 chr3 44387282 44387450 -173649708 + MIR3 SINE MIR 15 187 -21 267 322 132 26 chr3 44387893 44388045 -173649113 + MIR3 SINE MIR 16 183 -25 435 205 195 70 chr3 44388582 44388767 -173648391 - MER3 DNA MER1_type 0 209 2 200 271 52 21 chr3 44390308 44390404 -173646754 - MIR SINE MIR -62 200 102 320 111 49 0 chr3 44390740 44390821 -173646337 + (TA)n Simple_repeat Simple_repeat 1 85 0 22 56 0 0 chr3 44390824 44390860 -173646298 + AT_rich Low_complexity Low_complexity 1 36 0 339 324 92 42 chr3 44391620 44391858 -173645300 - MIR SINE MIR -11 251 2 202 267 0 17 chr3 44394936 44394996 -173642162 + (TG)n Simple_repeat Simple_repeat 2 60 0 371 242 76 86 chr3 44395918 44396116 -173641042 - MIR SINE MIR -8 254 59 250 73 0 0 chr3 44396684 44396725 -173640433 - L1PA6 LINE L1 0 6154 6114 * 1120 93 0 0 chr3 44396716 44396867 -173640291 + L1PA6 LINE L1 5981 6131 -23 336 287 28 46 chr3 44400625 44400733 -173636425 - L2 LINE L2 -18 3295 3190 198 71 0 0 chr3 44406364 44406392 -173630766 + (TC)n Simple_repeat Simple_repeat 1 28 0 405 0 0 0 chr3 44406394 44406439 -173630719 + (CA)n Simple_repeat Simple_repeat 2 46 0 2065 213 45 62 chr3 44407338 44407873 -173629285 - MLT1F LTR MaLR 0 542 17 513 110 0 0 chr3 44408361 44408452 -173628706 + (TG)n Simple_repeat Simple_repeat 1 91 0 24 67 0 0 chr3 44409071 44409116 -173628042 + AT_rich Low_complexity Low_complexity 1 45 0 1761 161 21 0 chr3 44409251 44409537 -173627621 - AluJb SINE Alu -12 300 9 208 311 0 33 chr3 44411386 44411476 -173625682 + (TA)n Simple_repeat Simple_repeat 2 88 0 238 211 0 19 chr3 44412892 44412944 -173624214 + CT-rich Low_complexity Low_complexity 4 54 0 213 288 15 30 chr3 44413750 44413816 -173623342 + L2 LINE L2 3184 3248 -65 347 219 17 76 chr3 44417840 44417959 -173619199 + MIR SINE MIR 67 178 -84 644 315 0 6 chr3 44418191 44418372 -173618786 + MIR SINE MIR 83 262 0 957 191 16 6 chr3 44420285 44420468 -173616690 - MER5A DNA MER1_type -4 185 1 1832 239 58 8 chr3 44420801 44421286 -173615872 - MER67D LTR ERV1 0 514 6 388 301 49 8 chr3 44421300 44421423 -173615735 - MIR3 SINE MIR -45 163 36 218 231 0 55 chr3 44421501 44421592 -173615566 + T-rich Low_complexity Low_complexity 2 87 0 358 325 197 0 chr3 44421810 44422013 -173615145 + MIR SINE MIR 16 258 -4 364 279 90 58 chr3 44423101 44423279 -173613879 + MIR SINE MIR 2 188 -20 333 0 0 0 chr3 44424004 44424041 -173613117 + (TAA)n Simple_repeat Simple_repeat 1 37 0 2364 83 7 3 chr3 44424067 44424369 -173612789 - AluSg SINE Alu -7 303 1 915 224 9 36 chr3 44426164 44426383 -173610775 + MER20 DNA MER1_type 7 219 0 199 214 29 19 chr3 44427426 44427529 -173609629 + (TATATG)n Simple_repeat Simple_repeat 4 107 0 198 208 0 0 chr3 44429923 44429971 -173607187 + (TG)n Simple_repeat Simple_repeat 1 48 0 251 328 33 8 chr3 44430689 44430811 -173606347 - L1ME3 LINE L1 -35 6127 6003 309 252 13 113 chr3 44430905 44430971 -173606187 - HAL1 LINE L1 -1556 951 907 1750 169 28 3 chr3 44430971 44431261 -173605897 - AluJo SINE Alu -12 300 4 309 252 13 113 chr3 44431261 44431345 -173605813 - HAL1 LINE L1 -1600 907 816 185 351 0 0 chr3 44431848 44431905 -173605253 + MIR SINE MIR 61 117 -91 * 438 343 74 9 chr3 44431902 44432118 -173605040 + MIR SINE MIR 7 236 -26 236 240 27 27 chr3 44432218 44432293 -173604865 + MIR SINE MIR 117 191 -71 21 0 0 0 chr3 44435026 44435047 -173602111 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr3 44436639 44436662 -173600496 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1504 223 0 14 chr3 44436667 44436959 -173600199 + AluJb SINE Alu 1 288 -24 332 218 113 57 chr3 44439173 44439297 -173597861 - MLT1H LTR MaLR -60 535 405 584 282 101 18 chr3 44439327 44439604 -173597554 - MLT1H LTR MaLR -249 300 1 2207 96 0 32 chr3 44442920 44443233 -173593925 + AluSx SINE Alu 1 303 -9 268 208 0 15 chr3 44443484 44443551 -173593607 + AluSc SINE Alu 131 175 -124 728 178 16 0 chr3 44443662 44443791 -173593367 + AluJb SINE Alu 182 308 -302 929 93 11 33 chr3 44443791 44443863 -173593295 + (GAAA)n Simple_repeat Simple_repeat 1 249 0 929 93 11 33 chr3 44443863 44444046 -173593112 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 728 178 16 0 chr3 44444046 44444089 -173593069 + AluJb SINE Alu 308 610 0 288 351 79 12 chr3 44444698 44444863 -173592295 - MIR SINE MIR -74 188 13 3140 238 20 45 chr3 44445364 44446517 -173590641 - L1M4 LINE L1 -2475 3671 2548 384 223 254 0 chr3 44448447 44448577 -173588581 - MER5A DNA MER1_type 0 189 27 306 0 0 0 chr3 44448893 44448927 -173588231 + (TG)n Simple_repeat Simple_repeat 2 35 0 244 220 0 0 chr3 44449437 44449487 -173587671 - L1MCb LINE L1 -5418 627 578 2846 187 16 82 chr3 44449512 44450223 -173586935 - MER4D LTR ERV1 -2 901 238 1510 186 28 14 chr3 44450286 44450576 -173586582 - MER49 LTR ERV1 -629 294 1 3311 141 2 42 chr3 44450696 44451243 -173585915 + MER61E LTR ERV1 1 525 -44 895 227 25 5 chr3 44451248 44451446 -173585712 - L1MCb LINE L1 -5847 717 516 1023 187 26 130 chr3 44451692 44452039 -173585119 - MER67D LTR ERV1 -203 311 1 234 162 0 0 chr3 44452039 44452076 -173585082 + L2 LINE L2 2593 2629 -685 27 0 0 0 chr3 44452127 44452154 -173585004 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr3 44452257 44452285 -173584873 + AT_rich Low_complexity Low_complexity 1 28 0 669 298 17 57 chr3 44452318 44452671 -173584487 - MLT1H LTR MaLR -187 362 24 314 266 95 44 chr3 44452695 44452853 -173584305 + L2 LINE L2 3148 3313 0 563 182 26 47 chr3 44453685 44453877 -173583281 - MER53 DNA DNA -1 188 1 2321 106 0 0 chr3 44453990 44454293 -173582865 + AluY SINE Alu 1 303 -8 220 284 45 0 chr3 44454795 44454862 -173582296 + MIR SINE MIR 59 128 -80 818 285 183 43 chr3 44454874 44455811 -173581347 - L2 LINE L2 -8 3305 2219 1917 141 0 23 chr3 44456156 44456460 -173580698 - AluSx SINE Alu -15 297 1 1393 157 113 7 chr3 44456513 44456787 -173580371 + MER44D DNA MER2_type 1 573 -36 589 272 56 21 chr3 44457703 44458014 -173579144 + MLT1H1 LTR MaLR 8 373 -222 29 47 0 0 chr3 44458459 44458502 -173578656 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr3 44458596 44458619 -173578539 + AT_rich Low_complexity Low_complexity 1 23 0 352 303 128 5 chr3 44460067 44460262 -173576896 + L1ME3A LINE L1 3516 3734 -2412 1418 256 77 90 chr3 44460361 44461117 -173576041 + L1ME3A LINE L1 4487 5251 -919 360 64 0 0 chr3 44461117 44461164 -173575994 + (CA)n Simple_repeat Simple_repeat 2 48 0 1418 256 77 90 chr3 44461164 44462102 -173575056 + L1ME3A LINE L1 5251 6165 -5 320 333 27 4 chr3 44462140 44462365 -173574793 + L1ME3 LINE L1 4617 4846 -1300 1095 298 74 9 chr3 44462498 44463173 -173573985 + L1ME3 LINE L1 5254 5972 -190 348 143 0 0 chr3 44463206 44463269 -173573889 + L1M LINE L1 5254 5316 -988 382 339 35 32 chr3 44463287 44463656 -173573502 + L1PA12 LINE L1 2 371 -7210 2211 212 44 30 chr3 44464704 44465577 -173571581 + L1PA12 LINE L1 2328 3266 -4318 28840 49 48 2 chr3 44465594 44469273 -173567885 + L1P LINE L1 9 3857 -2289 2464 107 10 0 chr3 44469269 44469652 -173567506 - L1P LINE L1 -743 5403 5017 * 3509 232 33 4 chr3 44469640 44470549 -173566609 + L1PA12 LINE L1 3766 4700 -2884 3040 163 26 66 chr3 44470565 44470881 -173566277 + L1MA4 LINE L1 5474 5801 -499 249 57 0 0 chr3 44470881 44470916 -173566242 + (TA)n Simple_repeat Simple_repeat 2 36 0 3040 163 26 66 chr3 44470916 44471294 -173565864 + L1MA4 LINE L1 5801 6140 -160 1222 269 87 17 chr3 44471427 44472022 -173565136 + HAL1b LINE L1 696 1332 -16 390 252 203 0 chr3 44472735 44472858 -173564300 - MER5A DNA MER1_type -6 183 36 239 250 62 25 chr3 44472929 44473009 -173564149 + L2 LINE L2 3188 3270 -2 180 294 110 28 chr3 44474555 44474664 -173562494 + L2 LINE L2 3196 3313 0 1681 158 91 32 chr3 44474869 44475225 -173561933 - THE1C LTR MaLR 0 375 2 1079 265 22 63 chr3 44475962 44476374 -173560784 + L1MCb LINE L1 77 471 -5574 234 295 67 27 chr3 44476868 44477092 -173560066 - HAL1b LINE L1 -25 1323 1091 205 309 0 0 chr3 44477375 44477430 -173559728 + (CA)n Simple_repeat Simple_repeat 2 56 0 485 312 130 14 chr3 44477465 44477811 -173559347 + HAL1 LINE L1 1475 1860 -647 328 313 124 62 chr3 44477841 44478259 -173558899 + HAL1 LINE L1 2060 2503 -4 598 288 63 62 chr3 44478261 44478862 -173558296 - HAL1b LINE L1 -265 1083 482 4830 83 74 109 chr3 44479475 44480331 -173556827 - LTR12 LTR ERV1 0 826 1 408 339 39 17 chr3 44481601 44481834 -173555324 - L1ME LINE L1 -479 5642 5405 3095 132 18 14 chr3 44482362 44482863 -173554295 + L1PA16 LINE L1 5664 6166 0 2512 110 13 11 chr3 44483117 44483491 -173553667 - THE1C LTR MaLR 0 375 1 24 67 0 0 chr3 44483724 44483769 -173553389 + AT_rich Low_complexity Low_complexity 1 45 0 2719 251 75 29 chr3 44484761 44485932 -173551226 - L1ME LINE L1 -907 5239 4015 1201 143 46 0 chr3 44485944 44486160 -173550998 - Tigger7 DNA MER2_type -1 2490 2265 287 204 0 0 chr3 44486157 44486206 -173550952 - Tigger7 DNA MER2_type -684 49 1 * 2722 267 73 16 chr3 44486245 44487446 -173549712 - L1ME LINE L1 -2473 3673 2404 1704 204 22 113 chr3 44487456 44488039 -173549119 - L1MA9 LINE L1 -271 6041 5512 1623 141 145 7 chr3 44488044 44488348 -173548810 + THE1C LTR MaLR 1 346 -29 198 0 0 0 chr3 44488348 44488370 -173548788 + (TTA)n Simple_repeat Simple_repeat 3 24 0 38516 63 42 0 chr3 44488370 44494241 -173542917 - L1PA5 LINE L1 -18 6136 11 256 167 0 0 chr3 44494247 44494289 -173542869 + THE1C LTR MaLR 387 428 0 1397 151 11 19 chr3 44494297 44494692 -173542466 - L1MA9 LINE L1 -746 5400 5107 27 49 0 0 chr3 44494723 44494764 -173542394 + AT_rich Low_complexity Low_complexity 1 41 0 192 40 0 0 chr3 44495375 44495400 -173541758 + (TG)n Simple_repeat Simple_repeat 2 26 0 180 0 0 0 chr3 44496556 44496576 -173540582 + (TTA)n Simple_repeat Simple_repeat 2 21 0 324 0 0 0 chr3 44498082 44498118 -173539040 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 1693 242 56 19 chr3 44498386 44498866 -173538292 - MLT1D LTR MaLR 0 505 8 246 288 0 0 chr3 44499041 44499107 -173538051 + MER116 DNA Mariner 1 66 -14 543 261 60 27 chr3 44499116 44499300 -173537858 - MIR SINE MIR -57 205 16 223 309 0 0 chr3 44499504 44499588 -173537570 + A-rich Low_complexity Low_complexity 1 84 0 221 216 0 0 chr3 44499772 44499809 -173537349 + polypurine Low_complexity Low_complexity 2 38 0 235 293 49 0 chr3 44500035 44500117 -173537041 + L1MC4 LINE L1 6618 6703 -1339 2255 115 0 0 chr3 44500144 44500439 -173536719 + AluSg SINE Alu 1 295 -15 956 241 59 96 chr3 44501280 44501556 -173535602 - MLT2C2 LTR ERVL -2 462 210 2453 30 40 16 chr3 44501556 44501860 -173535298 + AluY SINE Alu 1 311 0 956 241 59 96 chr3 44501860 44502061 -173535097 - MLT2C2 LTR ERVL -254 210 3 24 32 0 0 chr3 44502676 44502707 -173534451 + AT_rich Low_complexity Low_complexity 1 31 0 238 269 97 97 chr3 44504476 44504621 -173532537 - MIR SINE MIR -69 193 49 241 233 224 43 chr3 44505530 44505646 -173531512 - MIR SINE MIR -17 245 109 654 251 73 11 chr3 44505751 44505942 -173531216 - MIR SINE MIR -58 204 2 21 0 0 0 chr3 44505958 44505979 -173531179 + AT_rich Low_complexity Low_complexity 1 21 0 595 163 10 0 chr3 44505991 44506089 -173531069 + AluJ/FLAM SINE Alu 1 99 -213 807 193 18 0 chr3 44506259 44506425 -173530733 + FRAM SINE Alu 8 176 0 5172 186 32 44 chr3 44506990 44508027 -173529131 - L1MC1 LINE L1 -7 6606 5557 272 173 77 0 chr3 44508027 44508079 -173529079 + MADE1 DNA Mariner 1 56 -24 5172 186 32 44 chr3 44508079 44508331 -173528827 - L1MC1 LINE L1 -1056 5557 5303 8152 165 84 56 chr3 44508332 44508378 -173528780 - L1MC1 LINE L1 -4444 1982 1939 2182 114 3 10 chr3 44508378 44508684 -173528474 + AluSx SINE Alu 1 304 -8 8152 165 84 56 chr3 44508684 44510549 -173526609 - L1MC1 LINE L1 -4487 1939 17 1249 241 40 64 chr3 44511972 44512506 -173524652 - L1M4c LINE L1 -4459 1924 1188 423 345 75 31 chr3 44513318 44513640 -173523518 + LTR16C LTR ERVL 156 491 0 32 26 0 0 chr3 44514677 44514716 -173522442 + AT_rich Low_complexity Low_complexity 1 39 0 858 239 19 46 chr3 44514784 44515043 -173522115 - L1ME3 LINE L1 -1 6161 5910 252 307 16 8 chr3 44515290 44515417 -173521741 + L1MEd LINE L1 27 154 -5965 269 85 65 35 chr3 44515425 44515490 -173521668 + AluSg/x SINE Alu 120 178 -124 5567 180 9 39 chr3 44515490 44517602 -173519556 + L1P3 LINE L1 344 2449 -4012 6269 90 8 1 chr3 44517604 44518760 -173518398 + L1PA8A LINE L1 4976 6129 -2 578 318 71 21 chr3 44518820 44519100 -173518058 + L1MEd LINE L1 396 689 -5430 186 71 0 0 chr3 44519140 44519168 -173517990 + (TA)n Simple_repeat Simple_repeat 1 28 0 260 292 35 74 chr3 44519405 44519662 -173517496 + L1MEd LINE L1 1011 1257 -4862 32 0 0 0 chr3 44519702 44519734 -173517424 + AT_rich Low_complexity Low_complexity 1 32 0 32 26 0 0 chr3 44520222 44520261 -173516897 + AT_rich Low_complexity Low_complexity 1 39 0 1617 279 88 8 chr3 44520305 44520807 -173516351 - MLT1E LTR MaLR -51 542 1 23 33 0 0 chr3 44520807 44520837 -173516321 + AT_rich Low_complexity Low_complexity 1 30 0 206 152 0 22 chr3 44520864 44520910 -173516248 + T-rich Low_complexity Low_complexity 5 49 0 303 319 111 84 chr3 44522436 44522888 -173514270 + L2 LINE L2 2838 3301 -12 216 0 0 0 chr3 44523442 44523466 -173513692 + (T)n Simple_repeat Simple_repeat 1 24 0 1782 188 3 6 chr3 44524140 44524497 -173512661 - L1MA6 LINE L1 -4 6296 5941 312 325 110 32 chr3 44525038 44525284 -173511874 + L1M4 LINE L1 4301 4565 -1581 198 118 0 0 chr3 44525376 44525410 -173511748 + (TG)n Simple_repeat Simple_repeat 1 34 0 63 26 0 0 chr3 44525978 44526055 -173511103 + AT_rich Low_complexity Low_complexity 1 77 0 28 0 0 0 chr3 44526241 44526269 -173510889 + AT_rich Low_complexity Low_complexity 1 28 0 323 260 182 26 chr3 44526323 44526562 -173510596 + L1MC4 LINE L1 7652 7913 -48 7440 32 3 0 chr3 44526675 44527731 -173509427 - L1PA4 LINE L1 0 6155 5099 361 343 16 44 chr3 44527735 44527986 -173509172 + L2 LINE L2 1932 2175 -1139 1888 205 93 39 chr3 44528458 44528921 -173508237 - MLT1D LTR MaLR 0 505 18 3762 156 36 3 chr3 44529035 44529710 -173507448 - L1MC1 LINE L1 -1 6332 5636 335 311 42 48 chr3 44529812 44529979 -173507179 + L2 LINE L2 2636 2801 -513 447 320 112 46 chr3 44530082 44530538 -173506620 - LTR33 LTR ERVL -28 493 8 368 280 70 28 chr3 44530946 44531089 -173506069 - L1ME LINE L1 -465 5656 5508 1430 191 34 4 chr3 44533166 44533433 -173503725 - MER1B DNA MER1_type -64 275 1 317 231 10 67 chr3 44533433 44533537 -173503621 + MER117 DNA MER1_type 58 155 -42 248 265 0 19 chr3 44533632 44533703 -173503455 - MIR SINE MIR -119 89 20 230 278 0 0 chr3 44535716 44535804 -173501354 + (TG)n Simple_repeat Simple_repeat 1 88 0 225 312 8 16 chr3 44535717 44535842 -173501316 + (TA)n Simple_repeat Simple_repeat 1 124 0 * 12974 144 56 9 chr3 44535881 44538190 -173498968 - Tigger1 DNA MER2_type 0 2418 1 26 50 0 0 chr3 44538278 44538318 -173498840 + AT_rich Low_complexity Low_complexity 1 40 0 2749 157 79 63 chr3 44538333 44539170 -173497988 + L1MDa LINE L1 1807 2721 -4000 * 8517 186 106 43 chr3 44539168 44541469 -173495689 + L1MC1 LINE L1 20 2465 -3961 5716 208 31 18 chr3 44541613 44543696 -173493462 + L1MC1 LINE L1 4508 6613 0 21 0 0 0 chr3 44543713 44543734 -173493424 + AT_rich Low_complexity Low_complexity 1 21 0 889 263 98 103 chr3 44543845 44545119 -173492039 + HAL1 LINE L1 794 2059 -448 1825 121 3 60 chr3 44545119 44545434 -173491724 + AluSc SINE Alu 2 298 -11 889 263 98 103 chr3 44545434 44545881 -173491277 + HAL1 LINE L1 2059 2507 0 647 184 0 9 chr3 44547366 44547475 -173489683 + FLAM_A SINE Alu 11 118 -24 2220 102 0 0 chr3 44548597 44548890 -173488268 + AluSg SINE Alu 6 298 -12 213 338 50 29 chr3 44548907 44549046 -173488112 + MIR SINE MIR 118 259 -3 22 35 0 0 chr3 44550993 44551022 -173486136 + AT_rich Low_complexity Low_complexity 1 29 0 203 0 37 0 chr3 44552290 44552317 -173484841 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1406 172 69 48 chr3 44552659 44552950 -173484208 - AluJo SINE Alu -13 299 3 595 245 75 0 chr3 44553469 44553669 -173483489 + L1M4 LINE L1 4187 4401 -1745 228 232 18 0 chr3 44554449 44554505 -173482653 + (TG)n Simple_repeat Simple_repeat 1 57 0 215 255 0 0 chr3 44555214 44555265 -173481893 + T-rich Low_complexity Low_complexity 1 51 0 285 29 0 0 chr3 44555266 44555300 -173481858 + (TG)n Simple_repeat Simple_repeat 1 34 0 527 270 0 0 chr3 44555301 44555416 -173481742 - MLT1B LTR MaLR -49 341 227 230 216 40 54 chr3 44557445 44557519 -173479639 - L2 LINE L2 0 3313 3241 338 0 24 0 chr3 44557675 44557717 -173479441 + (TC)n Simple_repeat Simple_repeat 1 43 0 207 0 0 0 chr3 44557716 44557739 -173479419 + (CA)n Simple_repeat Simple_repeat 1 23 0 * 42410 37 23 3 chr3 44557839 44563745 -173473413 - L1PA2 LINE L1 -133 6022 1 2045 185 32 46 chr3 44563746 44564243 -173472915 - L1MC3 LINE L1 -202 7583 7094 * 4168 254 27 19 chr3 44564242 44565625 -173471533 - L1M4 LINE L1 -1293 4853 3460 589 214 83 128 chr3 44565633 44566031 -173471127 + MLT1B LTR MaLR 11 390 0 714 242 35 23 chr3 44566060 44566407 -173470751 - L1M4 LINE L1 -2712 3434 3084 737 265 22 13 chr3 44566438 44566668 -173470490 - L1MCb LINE L1 -5810 235 4 3056 59 15 12 chr3 44566767 44567175 -173469983 + L1PA7 LINE L1 5744 6152 -2 281 325 66 58 chr3 44567264 44567722 -173469436 - L2 LINE L2 -122 3191 2728 218 333 12 0 chr3 44568008 44568092 -173469066 + CT-rich Low_complexity Low_complexity 2 86 0 252 314 138 44 chr3 44568216 44568375 -173468783 + L2 LINE L2 2869 3042 -230 202 217 22 0 chr3 44568984 44569030 -173468128 + (TG)n Simple_repeat Simple_repeat 1 47 0 456 19 0 0 chr3 44569134 44569187 -173467971 + (TC)n Simple_repeat Simple_repeat 1 53 0 204 40 0 0 chr3 44569562 44569587 -173467571 + (TAG)n Simple_repeat Simple_repeat 2 26 0 399 307 49 25 chr3 44569598 44569761 -173467397 - MIR SINE MIR -12 250 84 206 73 0 49 chr3 44569865 44569906 -173467252 + (TA)n Simple_repeat Simple_repeat 2 40 0 269 277 45 27 chr3 44570667 44570779 -173466379 + MIR SINE MIR 120 233 -29 280 360 142 20 chr3 44570931 44571184 -173465974 + L2 LINE L2 2988 3271 -1 416 255 51 112 chr3 44571768 44572062 -173465096 - HAL1 LINE L1 -2231 276 1 821 266 36 58 chr3 44572544 44572968 -173464190 - LTR38B LTR ERV1 -26 584 149 195 42 0 0 chr3 44573352 44573376 -173463782 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 426 85 0 0 chr3 44574105 44574164 -173462994 + (TCC)n Simple_repeat Simple_repeat 2 60 0 13781 146 37 6 chr3 44574881 44577203 -173459955 - Tigger1 DNA MER2_type -1 2417 24 270 56 0 0 chr3 44577238 44577274 -173459884 + (TG)n Simple_repeat Simple_repeat 1 36 0 279 0 0 0 chr3 44577812 44577843 -173459315 + (TG)n Simple_repeat Simple_repeat 1 31 0 * 618 49 0 0 chr3 44577842 44577924 -173459234 + (GA)n Simple_repeat Simple_repeat 1 82 0 190 194 0 0 chr3 44579134 44579170 -173457988 - L2 LINE L2 -94 3219 3184 258 355 77 0 chr3 44579358 44579513 -173457645 - L2 LINE L2 -929 2385 2219 1493 179 97 45 chr3 44579847 44579896 -173457262 + LTR52 LTR ERVL 1 46 -375 339 0 0 0 chr3 44579896 44579938 -173457220 - L1PA3 LINE L1 -3 6152 6111 1493 179 97 45 chr3 44579938 44580268 -173456890 + LTR52 LTR ERVL 46 400 -21 462 326 77 29 chr3 44581605 44581918 -173455240 - L2 LINE L2 -548 2766 2439 246 62 0 0 chr3 44581948 44581980 -173455178 + (GA)n Simple_repeat Simple_repeat 2 33 0 447 321 66 10 chr3 44582007 44582203 -173454955 - MIR SINE MIR 0 262 56 328 286 0 0 chr3 44582780 44582850 -173454308 + MER91A DNA MER1_type 34 103 -93 263 307 50 20 chr3 44582898 44582999 -173454159 + MER91A DNA MER1_type 90 193 -3 576 215 31 110 chr3 44584459 44584650 -173452508 - MER58A DNA MER1_type -4 220 45 4200 194 57 36 chr3 44584835 44585208 -173451950 - L1MD2 LINE L1 -79 6280 5917 1720 200 13 25 chr3 44585208 44585603 -173451555 - MLT1B LTR MaLR 0 390 1 4200 194 57 36 chr3 44585603 44586516 -173450642 - L1MD2 LINE L1 -442 5917 4975 1325 281 65 49 chr3 44586544 44587981 -173449177 - L1ME LINE L1 -4147 2114 479 1980 157 0 0 chr3 44587981 44588275 -173448883 - AluSx SINE Alu -18 294 1 1325 281 65 49 chr3 44588275 44588442 -173448716 - L1ME LINE L1 -5782 479 316 317 354 32 6 chr3 44588510 44588668 -173448490 - L1ME LINE L1 -5668 310 149 286 240 10 31 chr3 44589103 44589199 -173447959 - L1ME LINE L1 -5929 141 48 203 264 23 11 chr3 44589505 44589592 -173447566 + CT-rich Low_complexity Low_complexity 3 90 0 3245 194 32 37 chr3 44590535 44591322 -173445836 + L1MB1 LINE L1 5386 6168 0 1253 272 83 41 chr3 44591332 44592188 -173444970 - L1M4 LINE L1 -3699 2683 1684 4702 109 27 0 chr3 44592188 44592892 -173444266 - L1PA11 LINE L1 0 6174 5452 1253 272 83 41 chr3 44592892 44593212 -173443946 - L1M4 LINE L1 -4698 1684 1379 2488 209 19 13 chr3 44593212 44593734 -173443424 - Tigger1 DNA MER2_type -1892 526 2 1921 231 117 45 chr3 44593734 44594374 -173442784 - L1MDb LINE L1 -4402 2138 1545 185 0 40 0 chr3 44594374 44594399 -173442759 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1921 231 117 45 chr3 44594399 44594926 -173442232 - L1MDb LINE L1 -4995 1545 917 246 105 0 0 chr3 44595070 44595108 -173442050 + (CTG)n Simple_repeat Simple_repeat 1 38 0 695 232 72 65 chr3 44595333 44595596 -173441562 - L1MDb LINE L1 -6260 280 16 978 305 68 65 chr3 44595628 44596762 -173440396 + L2 LINE L2 2186 3313 0 21 0 0 0 chr3 44597350 44597371 -173439787 + AT_rich Low_complexity Low_complexity 1 21 0 251 328 69 23 chr3 44598118 44598249 -173438909 + L2 LINE L2 3174 3310 -3 867 308 86 55 chr3 44599313 44600038 -173437120 + L1ME LINE L1 4623 5369 -777 983 42 0 0 chr3 44600403 44600521 -173436637 + L1PA3 LINE L1 6033 6150 -5 22 56 0 0 chr3 44601199 44601235 -173435923 + AT_rich Low_complexity Low_complexity 1 36 0 450 294 60 35 chr3 44601625 44601826 -173435332 + MIR SINE MIR 47 252 -10 2115 134 3 0 chr3 44602200 44602507 -173434651 - AluSx SINE Alu -4 308 1 2033 106 23 36 chr3 44603475 44604027 -173433131 + MER51A LTR ERV1 1 634 0 2269 108 0 3 chr3 44604523 44604828 -173432330 + AluSg SINE Alu 1 304 -6 1354 198 44 0 chr3 44605024 44605322 -173431836 + L1MB4 LINE L1 5869 6179 -1 2836 152 13 4 chr3 44607391 44607844 -173429314 + LTR32 LTR ERVL 15 471 0 352 226 86 0 chr3 44607844 44607937 -173429221 + L1ME3A LINE L1 6070 6170 0 312 314 36 52 chr3 44607965 44608176 -173428982 + L1ME LINE L1 5440 5641 -480 244 179 54 18 chr3 44608153 44608209 -173428949 + L1MA4A LINE L1 5624 5681 -653 * 234 81 0 0 chr3 44608944 44608981 -173428177 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 181 269 75 15 chr3 44609841 44609863 -173427295 - MER5A DNA MER1_type -6 183 164 234 0 0 0 chr3 44609863 44609889 -173427269 + (CAG)n Simple_repeat Simple_repeat 1 26 0 181 269 75 15 chr3 44609889 44609933 -173427225 - MER5A DNA MER1_type -25 164 113 * 272 246 246 0 chr3 44609892 44610002 -173427156 + MER5A DNA MER1_type 47 183 -6 463 296 56 0 chr3 44610117 44610259 -173426899 + MIR SINE MIR 25 174 -88 722 171 33 26 chr3 44610975 44611091 -173426067 - THE1B LTR MaLR 0 364 250 1419 166 35 3 chr3 44611091 44611381 -173425777 + L1MA4A LINE L1 5999 6297 -6 722 171 33 26 chr3 44611381 44611393 -173425765 - THE1B LTR MaLR -114 250 240 1969 110 17 30 chr3 44611393 44611693 -173425465 + AluSq SINE Alu 3 298 -15 722 171 33 26 chr3 44611693 44611715 -173425443 - THE1B LTR MaLR -124 240 212 1230 253 119 74 chr3 44611740 44612607 -173424551 + L1ME3A LINE L1 5264 6169 -1 864 176 18 0 chr3 44612608 44612778 -173424380 + L1MB3 LINE L1 6002 6174 -9 2071 105 14 8 chr3 44613155 44613512 -173423646 - LTR7 LTR ERV1 -2 448 1 2207 114 50 13 chr3 44613512 44613890 -173423268 - HERVH LTR ERV1 0 7713 7322 1304 130 33 9 chr3 44613888 44614103 -173423055 - HERVH LTR ERV1 -1894 5819 5600 * 4342 138 0 1 chr3 44614110 44614767 -173422391 - HERVH LTR ERV1 -2570 5143 4488 3431 98 8 6 chr3 44614769 44615270 -173421888 - HERVH LTR ERV1 -3720 3993 3492 * 20624 98 59 15 chr3 44615260 44618412 -173418746 - HERVH LTR ERV1 -4423 3290 1 2128 88 11 8 chr3 44618414 44618772 -173418386 - LTR7 LTR ERV1 -2 448 1 182 282 10 78 chr3 44620470 44620573 -173416585 + L2 LINE L2 2554 2649 -665 45 55 0 0 chr3 44621315 44621388 -173415770 + AT_rich Low_complexity Low_complexity 1 73 0 2722 179 62 81 chr3 44624777 44625444 -173411714 + LTR8A LTR ERV1 1 654 -73 2159 133 80 0 chr3 44625444 44625781 -173411377 - THE1B LTR MaLR 0 364 1 2722 179 62 81 chr3 44625781 44625854 -173411304 + LTR8A LTR ERV1 654 727 0 598 196 0 0 chr3 44625855 44625957 -173411201 + HUERS-P1 LTR ERV1 2 103 -6160 235 289 70 9 chr3 44626644 44626758 -173410400 + L1M4 LINE L1 2 122 -6420 1183 230 4 4 chr3 44626882 44627121 -173410037 + MLT1A1 LTR MaLR 127 365 0 21 36 0 0 chr3 44627182 44627210 -173409948 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 44627215 44627236 -173409922 + AT_rich Low_complexity Low_complexity 1 21 0 878 224 15 5 chr3 44627254 44627459 -173409699 + MER3 DNA MER1_type 2 208 -1 328 301 54 81 chr3 44627582 44627841 -173409317 + L1ME LINE L1 5411 5662 -459 889 225 58 119 chr3 44627859 44628280 -173408878 + MLT1A1 LTR MaLR 1 365 0 386 250 64 17 chr3 44628341 44628513 -173408645 - L1M4 LINE L1 -943 5203 5024 1240 80 17 28 chr3 44628554 44628730 -173408428 - AluY SINE Alu -18 293 120 344 206 87 56 chr3 44628815 44628941 -173408217 - L1M4 LINE L1 -1200 4946 4817 286 281 180 23 chr3 44629696 44629824 -173407334 + MIR SINE MIR 4 151 -111 898 361 69 20 chr3 44629884 44630626 -173406532 + ERVL LTR ERVL 1375 2152 -3612 833 310 54 46 chr3 44630740 44631042 -173406116 + ERVL LTR ERVL 2311 2620 -3144 1937 145 0 3 chr3 44631042 44631339 -173405819 + AluSx SINE Alu 1 296 -16 833 310 54 46 chr3 44631339 44631533 -173405625 + ERVL LTR ERVL 2620 2811 -2953 2960 159 50 45 chr3 44631554 44632169 -173404989 - LTR29 LTR ERV1 -4 618 1 1140 221 85 45 chr3 44632313 44632643 -173404515 - MER2 DNA MER2_type -1 343 1 1513 241 104 16 chr3 44632676 44633120 -173404038 + L2 LINE L2 1111 1593 -1721 1333 196 54 122 chr3 44633121 44633935 -173403223 + LTR8A LTR ERV1 1 727 0 865 243 176 35 chr3 44633984 44634297 -173402861 + LTR18A LTR ERVL 1 357 0 310 475 212 12 chr3 44634297 44634712 -173402446 + L2 LINE L2 1639 2136 -1178 180 152 0 0 chr3 44635669 44635702 -173401456 + CT-rich Low_complexity Low_complexity 2 34 0 405 264 114 69 chr3 44636425 44636641 -173400517 - MIR SINE MIR -2 260 38 1923 167 20 76 chr3 44636695 44637155 -173400003 + L1MA9 LINE L1 5879 6312 0 904 277 61 79 chr3 44638574 44639068 -173398090 - L2 LINE L2 0 3313 2829 16940 29 1 0 chr3 44639089 44641862 -173395296 - L1PA3 LINE L1 0 6155 3372 257 397 86 44 chr3 44642025 44642410 -173394748 + L2 LINE L2 2872 3272 0 4867 139 76 18 chr3 44643445 44644298 -173392860 - MER4D LTR ERV1 0 903 1 238 193 0 53 chr3 44644350 44644407 -173392751 - MIR SINE MIR -2 260 207 249 229 12 72 chr3 44644951 44645034 -173392124 + L2 LINE L2 3186 3263 -9 3136 127 99 40 chr3 44645232 44645830 -173391328 - MER41B LTR ERV1 -2 633 1 21 0 0 0 chr3 44646173 44646194 -173390964 + AT_rich Low_complexity Low_complexity 1 21 0 1234 203 143 12 chr3 44646895 44647336 -173389822 + LTR55 LTR ERV 1 537 -11 202 341 22 11 chr3 44647500 44647591 -173389567 - MIR SINE MIR -97 165 74 1507 230 6 6 chr3 44647617 44647969 -173389189 - MER57A LTR ERV1 0 403 52 2042 141 38 30 chr3 44648129 44648499 -173388659 - THE1C LTR MaLR 0 375 3 261 284 0 25 chr3 44648552 44648633 -173388525 - LTR67 LTR ERVL 0 557 479 22 70 0 0 chr3 44649151 44649194 -173387964 + AT_rich Low_complexity Low_complexity 1 43 0 2569 201 51 21 chr3 44649830 44650697 -173386461 - L1M4 LINE L1 -386 5798 4906 22 56 0 0 chr3 44650850 44650886 -173386272 + AT_rich Low_complexity Low_complexity 1 36 0 2063 99 0 67 chr3 44651433 44651747 -173385411 + AluY SINE Alu 1 293 -18 4804 251 42 37 chr3 44652232 44654742 -173382416 - L1ME1 LINE L1 -213 5953 3437 * 9558 207 31 29 chr3 44654740 44656546 -173380612 - L1PA16 LINE L1 0 6869 5067 1391 150 0 0 chr3 44656546 44656793 -173380365 - L1MA2 LINE L1 0 6304 6058 9558 207 31 29 chr3 44656793 44657871 -173379287 - L1PA16 LINE L1 -1802 5067 3992 1832 141 29 50 chr3 44657871 44658254 -173378904 + THE1C LTR MaLR 1 375 0 9558 207 31 29 chr3 44658254 44659578 -173377580 - L1PA16 LINE L1 -2877 3992 2134 11245 151 14 116 chr3 44659580 44660191 -173376967 - L1PA16 LINE L1 -4725 2124 1452 2023 138 0 0 chr3 44660191 44660480 -173376678 - AluSx SINE Alu -23 289 1 11245 151 14 116 chr3 44660480 44662226 -173374932 - L1PA16 LINE L1 -5397 1452 8 2127 248 104 21 chr3 44662238 44662784 -173374374 - L1ME1 LINE L1 -2702 3444 2790 1837 139 48 43 chr3 44662784 44663157 -173374001 + THE1C LTR MaLR 1 375 0 2127 248 104 21 chr3 44663157 44663527 -173373631 - L1ME1 LINE L1 -3356 2790 2452 265 255 138 21 chr3 44663674 44663819 -173373339 - L1MA2 LINE L1 -2384 5424 5263 357 290 118 42 chr3 44664105 44664529 -173372629 - L1M4 LINE L1 -1199 4947 4492 5808 119 14 7 chr3 44664580 44665890 -173371268 - L1PA15 LINE L1 -6 6159 4843 319 304 183 13 chr3 44667083 44667250 -173369908 + MIR SINE MIR 11 203 -59 320 277 57 35 chr3 44667744 44667885 -173369273 - MIR SINE MIR -3 259 116 266 336 36 9 chr3 44668280 44668390 -173368768 + MIR3 SINE MIR 94 206 -2 253 297 11 0 chr3 44668495 44668586 -173368572 + (TA)n Simple_repeat Simple_repeat 2 93 0 293 371 30 26 chr3 44668990 44669222 -173367936 - MIR SINE MIR -10 252 20 198 304 230 7 chr3 44669850 44669985 -173367173 - MIR SINE MIR -10 252 88 292 371 30 0 chr3 44671301 44671433 -173365725 + MIR SINE MIR 57 192 -70 26 0 0 0 chr3 44672335 44672361 -173364797 + AT_rich Low_complexity Low_complexity 1 26 0 579 233 125 17 chr3 44672463 44672759 -173364399 - Charlie2 DNA MER1_type -3 2859 2532 365 273 61 0 chr3 44672767 44672866 -173364292 - MIR SINE MIR -131 131 27 367 319 97 32 chr3 44675259 44675444 -173361714 + MIR SINE MIR 48 244 -18 1685 128 77 4 chr3 44675981 44676254 -173360904 - AluSx SINE Alu -19 293 1 2442 152 19 13 chr3 44676274 44676736 -173360422 - L1MA4 LINE L1 -6 6294 5830 1242 153 4 55 chr3 44676736 44676950 -173360208 + L1MA4 LINE L1 5587 5788 -512 2201 112 0 0 chr3 44676950 44677246 -173359912 - AluSx SINE Alu -16 296 1 1242 153 4 55 chr3 44677246 44677285 -173359873 + L1MA4 LINE L1 5788 5827 -473 440 330 54 41 chr3 44677322 44677616 -173359542 - L1ME4a LINE L1 -207 5914 5617 2119 104 27 3 chr3 44678113 44678411 -173358747 - AluSq SINE Alu -8 305 1 297 330 131 55 chr3 44679238 44679620 -173357538 - L2 LINE L2 -19 3294 2884 2473 47 0 31 chr3 44681295 44681613 -173355545 + AluY SINE Alu 1 308 -3 297 346 85 13 chr3 44681922 44682075 -173355083 + MIR SINE MIR 12 175 -87 21 57 0 0 chr3 44682568 44682603 -173354555 + AT_rich Low_complexity Low_complexity 1 35 0 568 306 52 6 chr3 44682870 44683043 -173354115 + MIR SINE MIR 20 200 -62 249 139 0 0 chr3 44683096 44683139 -173354019 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 36 0 0 chr3 44683145 44683173 -173353985 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 44684967 44684988 -173352170 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr3 44686481 44686514 -173350644 + (TG)n Simple_repeat Simple_repeat 2 34 0 862 218 119 72 chr3 44686514 44686818 -173350340 - LTR16A1 LTR ERVL -3 454 125 906 214 11 11 chr3 44686818 44687005 -173350153 + MER5A DNA MER1_type 2 188 -1 862 218 119 72 chr3 44687005 44687103 -173350055 - LTR16A1 LTR ERVL -332 125 33 1451 181 0 8 chr3 44687121 44687386 -173349772 - L1PA15 LINE L1 0 6165 5903 12566 245 19 30 chr3 44687401 44688385 -173348773 - L1PA13 LINE L1 -1235 5562 4569 2205 148 60 24 chr3 44688385 44688798 -173348360 + MSTA LTR MaLR 1 428 0 12566 245 19 30 chr3 44688798 44692132 -173345026 - L1PA13 LINE L1 -2228 4569 1295 2208 310 18 29 chr3 44692109 44692826 -173344332 - L1PA13 LINE L1 -5982 805 97 * 22 0 0 0 chr3 44693510 44693532 -173343626 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 44694505 44694527 -173342631 + AT_rich Low_complexity Low_complexity 1 22 0 1893 278 121 58 chr3 44695685 44696758 -173340400 - HAL1 LINE L1 -32 2475 1244 3555 30 2 11 chr3 44696758 44697195 -173339963 - L1PA4 LINE L1 0 6155 5723 1893 278 121 58 chr3 44697195 44697899 -173339259 - HAL1 LINE L1 -1263 1244 586 355 317 73 94 chr3 44697900 44698379 -173338779 - HAL1 LINE L1 -1949 558 90 27 0 0 0 chr3 44698958 44698985 -173338173 + AT_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr3 44700229 44700265 -173336893 + AT_rich Low_complexity Low_complexity 1 36 0 402 127 14 0 chr3 44700481 44700552 -173336606 - MSTB LTR MaLR 0 426 355 874 114 8 8 chr3 44702367 44702498 -173334660 + AluJb SINE Alu 1 131 -181 531 295 143 5 chr3 44704259 44704483 -173332675 + MIR SINE MIR 6 260 -2 189 0 0 0 chr3 44705318 44705339 -173331819 + (TG)n Simple_repeat Simple_repeat 2 22 0 21 0 0 0 chr3 44705933 44705954 -173331204 + AT_rich Low_complexity Low_complexity 1 21 0 540 0 0 0 chr3 44706567 44706627 -173330531 + (TG)n Simple_repeat Simple_repeat 2 61 0 219 146 0 0 chr3 44707514 44707555 -173329603 + (TC)n Simple_repeat Simple_repeat 2 42 0 188 196 0 36 chr3 44707554 44707610 -173329548 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 * 1504 224 87 9 chr3 44707653 44708190 -173328968 + LTR65 LTR ERV1 2 668 -1 203 321 151 0 chr3 44709456 44709562 -173327596 - MIR3 SINE MIR -6 202 81 2209 113 0 0 chr3 44709821 44710114 -173327044 - AluSx SINE Alu -17 295 3 200 309 41 93 chr3 44710143 44710240 -173326918 - L2 LINE L2 -3 3269 3178 392 256 0 115 chr3 44710815 44710971 -173326187 - MIR3 SINE MIR -8 200 63 343 258 74 74 chr3 44711719 44711882 -173325276 - MIR SINE MIR -18 244 82 21 0 0 0 chr3 44712238 44712259 -173324899 + AT_rich Low_complexity Low_complexity 1 21 0 693 159 0 0 chr3 44712625 44712732 -173324426 + FLAM_A SINE Alu 3 109 -33 207 276 0 0 chr3 44713899 44713975 -173323183 + (TATATG)n Simple_repeat Simple_repeat 4 79 0 238 333 0 0 chr3 44713978 44714068 -173323090 + MER94 DNA DNA 5 94 -40 23 33 0 0 chr3 44714170 44714200 -173322958 + AT_rich Low_complexity Low_complexity 1 30 0 293 312 40 27 chr3 44715757 44715923 -173321235 - MIR SINE MIR -34 228 62 466 267 148 49 chr3 44716776 44717121 -173320037 + LTR33 LTR ERVL 76 454 -67 366 357 56 0 chr3 44717184 44717310 -173319848 + MIR SINE MIR 39 171 -91 211 340 0 80 chr3 44717889 44717989 -173319169 + MIR SINE MIR 35 126 -82 187 214 24 0 chr3 44718966 44719008 -173318150 - MIR SINE MIR -111 151 109 754 224 5 41 chr3 44719132 44719328 -173317830 + MER5A DNA MER1_type 1 189 0 523 245 107 36 chr3 44722749 44722945 -173314213 - MER63A DNA MER1_type 0 210 1 279 0 0 0 chr3 44723996 44724027 -173313131 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 2230 110 0 20 chr3 44724728 44725029 -173312129 + AluSc SINE Alu 1 295 -14 191 288 17 51 chr3 44725590 44725649 -173311509 - L3 LINE CR1 -12 1565 1509 492 289 138 22 chr3 44726317 44726542 -173310616 + MIR SINE MIR 1 251 -11 21 0 0 0 chr3 44728272 44728293 -173308865 + AT_rich Low_complexity Low_complexity 1 21 0 539 324 80 25 chr3 44731889 44732127 -173305031 - MIR SINE MIR -6 256 6 1622 139 139 67 chr3 44734488 44734833 -173302325 - MSTB1 LTR MaLR 0 432 52 2122 102 0 44 chr3 44734833 44735148 -173302010 - AluSp SINE Alu -12 301 1 1622 139 139 67 chr3 44735148 44735205 -173301953 - MSTB1 LTR MaLR -380 52 1 1791 149 66 30 chr3 44736063 44736425 -173300733 - THE1C LTR MaLR 0 375 1 25 51 0 0 chr3 44736617 44736656 -173300502 + AT_rich Low_complexity Low_complexity 1 39 0 25 31 0 0 chr3 44737378 44737410 -173299748 + AT_rich Low_complexity Low_complexity 1 32 0 4401 181 95 39 chr3 44739636 44740586 -173296572 - MER52A LTR ERV1 0 1755 753 505 231 87 92 chr3 44740585 44740780 -173296378 - MER52A LTR ERV1 -1560 195 2 * 190 378 0 9 chr3 44740964 44741075 -173296083 + L3b LINE CR1 1319 1428 -155 245 240 0 0 chr3 44741399 44741449 -173295709 + (CA)n Simple_repeat Simple_repeat 1 50 0 26 30 0 0 chr3 44741481 44741514 -173295644 + AT_rich Low_complexity Low_complexity 1 33 0 222 286 26 13 chr3 44741742 44741819 -173295339 + MIR SINE MIR 76 153 -109 228 333 81 11 chr3 44742438 44742525 -173294633 + L3b LINE CR1 1476 1568 -15 24 0 0 0 chr3 44742741 44742765 -173294393 + AT_rich Low_complexity Low_complexity 1 24 0 1959 275 67 40 chr3 44743660 44744830 -173292328 + L1ME3A LINE L1 4955 6153 -17 278 281 35 18 chr3 44745510 44745624 -173291534 - MLT1I LTR MaLR 0 409 294 1388 253 48 61 chr3 44745747 44745783 -173291375 - HERV16 LTR ERVL -2605 2391 2356 2004 119 0 60 chr3 44745783 44746101 -173291057 + AluSq SINE Alu 1 299 -14 1388 253 48 61 chr3 44746101 44746585 -173290573 - HERV16 LTR ERVL -2640 2356 1878 1832 213 71 26 chr3 44746585 44747007 -173290151 + MLT2B1 LTR ERVL 1 441 -79 2209 156 0 0 chr3 44747033 44747372 -173289786 + MER7A DNA MER2_type 1 337 -9 241 184 0 0 chr3 44747382 44747431 -173289727 + MLT2B1 LTR ERVL 472 520 0 998 322 31 29 chr3 44747435 44748162 -173288996 - HERV16 LTR ERVL -3213 1783 1059 24 32 0 0 chr3 44748514 44748545 -173288613 + AT_rich Low_complexity Low_complexity 1 31 0 528 283 53 89 chr3 44748659 44749266 -173287892 + L1ME3A LINE L1 3652 4236 -1910 23 33 0 0 chr3 44749285 44749315 -173287843 + AT_rich Low_complexity Low_complexity 1 30 0 293 283 83 20 chr3 44749741 44750121 -173287037 + L1ME3A LINE L1 4944 5354 -805 440 278 97 27 chr3 44750507 44750766 -173286392 + L1ME3A LINE L1 5692 5968 -202 207 0 0 0 chr3 44751346 44751369 -173285789 + (TG)n Simple_repeat Simple_repeat 1 23 0 524 311 109 48 chr3 44752099 44752183 -173284975 + L1ME LINE L1 652 729 -5351 1951 148 7 0 chr3 44752183 44752486 -173284672 + AluSx SINE Alu 1 305 -7 524 311 109 48 chr3 44752486 44752912 -173284246 + L1ME LINE L1 729 1178 -4902 300 27 0 0 chr3 44752914 44752951 -173284207 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1105 276 122 22 chr3 44752992 44753401 -173283757 - MLT1H LTR MaLR -97 452 3 294 151 0 139 chr3 44754093 44754133 -173283025 - MER5A DNA MER1_type -83 106 83 3476 70 18 0 chr3 44754133 44754590 -173282568 - L1PA8 LINE L1 0 6172 5708 294 151 0 139 chr3 44754590 44754635 -173282523 - MER5A DNA MER1_type -106 83 33 878 222 11 0 chr3 44754953 44755129 -173282029 + MER45A DNA AcHobo 1 178 0 435 52 0 0 chr3 44755449 44755507 -173281651 + (TG)n Simple_repeat Simple_repeat 2 59 0 717 149 9 0 chr3 44755507 44755621 -173281537 - AluJb SINE Alu -197 115 1 717 222 54 10 chr3 44756919 44757122 -173280036 - L1MC3 LINE L1 -21 7764 7553 820 20 0 0 chr3 44757139 44757237 -173279921 - L1PA2 LINE L1 0 6155 6058 279 0 0 0 chr3 44760146 44760177 -173276981 + (CA)n Simple_repeat Simple_repeat 2 32 0 180 0 0 0 chr3 44760256 44760276 -173276882 + (CCCTAA)n Simple_repeat Simple_repeat 5 24 0 249 108 0 0 chr3 44760278 44760315 -173276843 + (TG)n Simple_repeat Simple_repeat 2 38 0 279 0 0 0 chr3 44761568 44761599 -173275559 + (TG)n Simple_repeat Simple_repeat 2 32 0 243 376 20 0 chr3 44764445 44764546 -173272612 - MIR3 SINE MIR -23 185 83 1328 214 7 17 chr3 44766104 44766398 -173270760 - MER58B DNA MER1_type 0 341 51 283 324 97 16 chr3 44766698 44766883 -173270275 + MLT1H LTR MaLR 127 326 -223 291 267 69 10 chr3 44766933 44767034 -173270124 + MLT1H LTR MaLR 399 505 -44 2480 39 0 0 chr3 44768255 44768540 -173268618 + AluY SINE Alu 1 285 -26 1672 177 0 0 chr3 44768715 44769026 -173268132 + AluY SINE Alu 1 311 0 261 302 165 16 chr3 44769236 44769418 -173267740 + HAL1 LINE L1 1209 1417 -1090 1930 146 32 35 chr3 44769418 44769794 -173267364 - THE1C LTR MaLR 0 375 1 10162 122 34 8 chr3 44769800 44771333 -173265825 - THE1C-int LTR MaLR -7 1573 1 1725 162 37 40 chr3 44771333 44771709 -173265449 - THE1C LTR MaLR 0 375 1 248 335 128 5 chr3 44771709 44771912 -173265246 + HAL1 LINE L1 1413 1640 -867 243 219 12 61 chr3 44772169 44772251 -173264907 - L1MC5 LINE L1 -76 7885 7808 26 74 0 0 chr3 44772269 44772323 -173264835 + AT_rich Low_complexity Low_complexity 1 54 0 1313 266 70 19 chr3 44773154 44773567 -173263591 - LTR16A1 LTR ERVL -2 455 22 239 312 123 7 chr3 44773893 44774031 -173263127 + MIR SINE MIR 85 238 -24 2662 254 32 36 chr3 44774266 44775266 -173261892 - L1ME1 LINE L1 -5 6161 5164 250 163 0 20 chr3 44775255 44775304 -173261854 + L1ME4a LINE L1 5969 6016 -105 * 481 188 0 40 chr3 44775809 44775910 -173261248 - MLT1A1 LTR MaLR -265 100 4 184 276 35 46 chr3 44776055 44776142 -173261016 - MIR SINE MIR -83 179 94 1324 212 42 10 chr3 44776307 44776472 -173260686 - AluJo SINE Alu -15 297 118 723 44 0 0 chr3 44776472 44776563 -173260595 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 1324 212 42 10 chr3 44776563 44776685 -173260473 - AluJo SINE Alu -194 118 1 2075 90 17 43 chr3 44776841 44777142 -173260016 + AluY SINE Alu 1 293 -18 263 313 24 24 chr3 44777563 44777646 -173259512 - MIR SINE MIR -92 116 34 333 208 13 0 chr3 44778511 44778588 -173258570 + MER116 DNA Mariner 1 78 -2 355 237 169 21 chr3 44778776 44779012 -173258146 - L1ME1 LINE L1 -1534 4612 4342 37835 36 2 1 chr3 44779121 44784202 -173252956 - L1PA3 LINE L1 -322 5833 749 961 250 34 15 chr3 44784205 44784469 -173252689 - L1M2 LINE L1 -6576 273 5 499 182 0 0 chr3 44784469 44784546 -173252612 - Tigger3(Golem) DNA MER2_type -2950 79 3 916 196 34 123 chr3 44784546 44784928 -173252230 + L1MB8 LINE L1 5826 6173 -5 2841 82 0 11 chr3 44785354 44785732 -173251426 + THE1C LTR MaLR 2 375 0 245 270 11 22 chr3 44787130 44787219 -173249939 + L1MC3 LINE L1 4911 4998 -1148 321 360 45 48 chr3 44787322 44787713 -173249445 + L1MEc LINE L1 39 430 -5966 1681 143 35 47 chr3 44787713 44787937 -173249221 - MER44D DNA MER2_type -1882 609 384 537 16 0 0 chr3 44787937 44787999 -173249159 + (CA)n Simple_repeat Simple_repeat 2 63 0 1681 143 35 47 chr3 44787999 44788117 -173249041 - MER44D DNA MER2_type -2107 384 1 321 360 45 48 chr3 44788117 44788591 -173248567 + L1MEc LINE L1 430 901 -5495 * 5287 255 59 12 chr3 44788587 44789874 -173247284 + L1MC3 LINE L1 5477 6824 -961 2634 240 153 14 chr3 44789885 44790711 -173246447 - L1M4c LINE L1 -5415 969 30 239 250 79 0 chr3 44791624 44791700 -173245458 + (AATAG)n Simple_repeat Simple_repeat 2 83 0 23 0 0 0 chr3 44792053 44792076 -173245082 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr3 44794849 44794870 -173242288 + (CA)n Simple_repeat Simple_repeat 2 22 0 199 143 18 36 chr3 44796007 44796063 -173241095 + A-rich Low_complexity Low_complexity 5 59 0 2302 185 32 28 chr3 44796346 44796745 -173240413 + MLT1C LTR MaLR 1 404 -63 2815 13 0 0 chr3 44796745 44797053 -173240105 - AluY SINE Alu -3 308 1 2302 185 32 28 chr3 44797053 44797118 -173240040 + MLT1C LTR MaLR 404 467 0 314 200 94 12 chr3 44797999 44798084 -173239074 - MIR SINE MIR -1 261 170 236 297 16 70 chr3 44798741 44798869 -173238289 - MIR SINE MIR -70 192 72 24 0 0 0 chr3 44799100 44799124 -173238034 + AT_rich Low_complexity Low_complexity 1 24 0 5031 97 8 14 chr3 44799125 44799857 -173237301 - L1PA10 LINE L1 -2 6166 5439 485 328 116 17 chr3 44799960 44800314 -173236844 - L1M4 LINE L1 -1606 4540 4152 1451 205 0 47 chr3 44800323 44800640 -173236518 - AluJb SINE Alu -10 302 1 251 120 0 40 chr3 44800828 44800878 -173236280 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 643 187 22 30 chr3 44800892 44801026 -173236132 + L1MD3 LINE L1 6726 6858 -1137 289 365 74 5 chr3 44801066 44801255 -173235903 - MIR SINE MIR -15 247 46 213 269 0 77 chr3 44803059 44803137 -173234021 - MIR SINE MIR -73 189 118 466 275 23 15 chr3 44803305 44803436 -173233722 + MIR SINE MIR 110 241 -21 240 237 15 37 chr3 44803671 44803806 -173233352 + (TTATA)n Simple_repeat Simple_repeat 5 136 0 2013 146 9 3 chr3 44803832 44804155 -173233003 - MER7A DNA MER2_type -23 323 1 444 350 48 18 chr3 44804455 44804852 -173232306 - MLT1I LTR MaLR 0 409 1 2263 103 10 0 chr3 44805126 44805428 -173231730 - AluSc SINE Alu -4 305 1 671 35 12 0 chr3 44806040 44806126 -173231032 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 768 170 0 30 chr3 44806418 44806553 -173230605 - AluJb SINE Alu -181 131 1 482 288 52 47 chr3 44806846 44807079 -173230079 - L1ME LINE L1 -443 5727 5494 30 45 0 0 chr3 44807236 44807280 -173229878 + AT_rich Low_complexity Low_complexity 1 44 0 1920 133 21 0 chr3 44807317 44807519 -173229639 - AluSx SINE Alu 0 330 118 194 0 39 0 chr3 44807519 44807545 -173229613 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1920 133 21 0 chr3 44807545 44807666 -173229492 - AluSx SINE Alu -212 118 1 588 290 0 18 chr3 44807670 44807887 -173229271 - L1MC4 LINE L1 -472 7570 7358 232 316 66 0 chr3 44807947 44808023 -173229135 + LTR16A1 LTR ERVL 57 137 -320 1342 264 43 23 chr3 44808400 44808915 -173228243 - L1ME1 LINE L1 -5 6161 5637 228 367 32 6 chr3 44808986 44809144 -173228014 - L1MEc LINE L1 -5925 471 310 378 245 0 49 chr3 44809156 44809258 -173227900 - L1M4 LINE L1 -2260 3886 3790 324 0 0 0 chr3 44809258 44809294 -173227864 + (TG)n Simple_repeat Simple_repeat 2 37 0 1835 135 4 4 chr3 44809381 44809662 -173227496 - AluSx SINE Alu -13 299 19 8108 216 20 15 chr3 44809724 44811348 -173225810 + L1M1 LINE L1 11 1642 -5923 309 136 0 0 chr3 44811351 44811395 -173225763 + L1M1 LINE L1 1731 1774 -5791 21915 191 22 20 chr3 44811412 44811915 -173225243 - L1PA11 LINE L1 -266 7346 6845 2321 92 0 10 chr3 44811915 44812220 -173224938 - AluY SINE Alu -5 306 5 21915 191 22 20 chr3 44812220 44817218 -173219940 - L1PA11 LINE L1 -767 6845 1008 2275 102 3 0 chr3 44817218 44817512 -173219646 + AluSx SINE Alu 1 295 -17 21915 191 22 20 chr3 44817512 44818515 -173218643 - L1PA11 LINE L1 -6604 1008 8 461 299 43 11 chr3 44818763 44818947 -173218211 - L1MEc LINE L1 -5988 408 219 247 252 43 43 chr3 44819818 44819933 -173217225 + MLT1H1 LTR MaLR 439 553 -2 321 278 30 53 chr3 44819970 44820103 -173217055 + MIR SINE MIR 123 252 -10 804 262 22 71 chr3 44821197 44821697 -173215461 + MLT2C1 LTR ERVL 1 458 -6 218 368 21 21 chr3 44821698 44821793 -173215365 + L2 LINE L2 1058 1152 -2162 180 0 0 0 chr3 44822937 44822957 -173214201 + (GAA)n Simple_repeat Simple_repeat 2 21 0 4732 170 23 48 chr3 44822957 44824542 -173212616 + L1MA4 LINE L1 4705 6251 -49 240 264 0 0 chr3 44824544 44824597 -173212561 + L1M1 LINE L1 11 63 -7502 2557 155 14 9 chr3 44824597 44825023 -173212135 - MSTA LTR MaLR 0 428 1 1509 170 30 27 chr3 44825023 44825323 -173211835 - MSTA-int LTR MaLR 0 1651 1351 2648 203 37 4 chr3 44825324 44825807 -173211351 - MSTA-int LTR MaLR -764 887 389 * 5530 185 33 46 chr3 44825805 44826719 -173210439 + L1MA3 LINE L1 4088 5013 -1292 1406 187 53 14 chr3 44826719 44827002 -173210156 + AluJb SINE Alu 3 296 -16 5530 185 33 46 chr3 44827002 44828072 -173209086 + L1MA3 LINE L1 5013 6052 -253 226 136 9 91 chr3 44828101 44828211 -173208947 + (TATAA)n Simple_repeat Simple_repeat 5 105 0 1152 100 33 0 chr3 44828212 44828392 -173208766 + L1MA3 LINE L1 6120 6305 0 821 300 50 27 chr3 44828679 44829254 -173207904 + MLT2E LTR ERVL 3 628 0 499 334 29 32 chr3 44829513 44829824 -173207334 + ERVL-E LTR ERVL 316 625 -5139 613 337 4 4 chr3 44829991 44830258 -173206900 + ERVL-E LTR ERVL 911 1177 -4587 1149 316 0 53 chr3 44830277 44830670 -173206488 - LTR16B LTR ERVL -92 372 1 508 288 21 25 chr3 44830877 44831117 -173206041 + L1M4 LINE L1 2680 2918 -3228 389 325 48 43 chr3 44831322 44831510 -173205648 + MIR SINE MIR 7 195 -67 1065 168 9 44 chr3 44832194 44832420 -173204738 - MER20 DNA MER1_type 0 219 2 189 0 0 0 chr3 44832666 44832687 -173204471 + (TG)n Simple_repeat Simple_repeat 2 22 0 302 246 37 15 chr3 44833308 44833442 -173203716 - L1M4 LINE L1 -3642 2504 2368 25 0 0 0 chr3 44833527 44833552 -173203606 + AT_rich Low_complexity Low_complexity 1 25 0 6290 180 49 24 chr3 44833558 44835810 -173201348 - L1MA9 LINE L1 -38 6274 3959 3619 171 17 4 chr3 44835821 44836516 -173200642 - L1MA5 LINE L1 -2 6298 5595 448 232 79 17 chr3 44836528 44836705 -173200453 - L1MD3 LINE L1 -110 7885 7698 2006 133 15 6 chr3 44837909 44838240 -173198918 + L1MA4 LINE L1 5909 6242 -58 335 350 25 12 chr3 44838454 44838614 -173198544 - MIR SINE MIR -42 220 59 243 0 0 0 chr3 44839177 44839204 -173197954 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4924 122 4 49 chr3 44839347 44840085 -173197073 - L1PA4 LINE L1 -6 6149 5445 1655 210 64 35 chr3 44840120 44840573 -173196585 + MER31B LTR ERV1 1 466 0 571 96 0 0 chr3 44840729 44840802 -173196356 + Tigger3(Golem) DNA MER2_type 36 108 -2921 * 3789 126 89 13 chr3 44840794 44841492 -173195666 + Tigger3(Golem) DNA MER2_type 2279 3029 0 22 0 0 0 chr3 44841732 44841754 -173195404 + AT_rich Low_complexity Low_complexity 1 22 0 182 300 0 50 chr3 44842774 44842834 -173194324 - MIR SINE MIR -4 258 202 574 289 86 15 chr3 44842910 44843266 -173193892 + LTR33 LTR ERVL 104 512 -9 311 322 62 28 chr3 44843484 44843548 -173193610 - MIR SINE MIR -73 189 129 1475 243 67 30 chr3 44843548 44844084 -173193074 - LTR38 LTR ERV1 0 556 1 311 322 62 28 chr3 44844084 44844196 -173192962 - MIR SINE MIR -133 129 7 2338 74 0 0 chr3 44844675 44844987 -173192171 + AluY SINE Alu 1 312 0 1257 293 66 27 chr3 44845039 44845702 -173191456 - L1ME3 LINE L1 -216 6015 5327 23 0 0 0 chr3 44846013 44846036 -173191122 + AT_rich Low_complexity Low_complexity 1 23 0 3741 156 80 6 chr3 44846109 44846771 -173190387 - MER50 LTR ERV1 -23 711 1 335 289 59 7 chr3 44846943 44847095 -173190063 - L1ME3 LINE L1 -4723 1673 1514 2585 208 43 103 chr3 44847159 44847599 -173189559 - MER21B LTR ERV1 -109 754 380 1428 185 83 0 chr3 44847599 44847875 -173189283 - AluJo SINE Alu -10 302 4 2585 208 43 103 chr3 44847875 44848223 -173188935 - MER21B LTR ERV1 -483 380 13 25 0 0 0 chr3 44848347 44848372 -173188786 + AT_rich Low_complexity Low_complexity 1 25 0 689 226 0 0 chr3 44848430 44848576 -173188582 + L1MD3 LINE L1 7830 7975 -20 203 133 0 0 chr3 44849508 44849538 -173187620 + (CA)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr3 44850003 44850025 -173187133 + AT_rich Low_complexity Low_complexity 1 22 0 1362 223 128 47 chr3 44850439 44851164 -173185994 - L1MC5 LINE L1 -304 7657 6874 23 68 0 0 chr3 44851183 44851227 -173185931 + AT_rich Low_complexity Low_complexity 1 44 0 4711 136 44 7 chr3 44851227 44852065 -173185093 - L1MA6 LINE L1 -6 6294 5426 6495 219 22 102 chr3 44852067 44852998 -173184160 - L1 LINE L1 -1224 6341 5338 4927 163 26 13 chr3 44852998 44853907 -173183251 + MER49 LTR ERV1 3 923 0 6495 219 22 102 chr3 44853907 44854299 -173182859 - L1 LINE L1 -2227 5338 4916 2366 152 24 36 chr3 44854299 44854655 -173182503 + MSTC LTR MaLR 10 362 -66 2083 136 7 0 chr3 44854655 44854965 -173182193 + AluSx SINE Alu 1 312 0 2366 152 24 36 chr3 44854965 44855029 -173182129 + MSTC LTR MaLR 362 425 -3 6495 219 22 102 chr3 44855029 44856595 -173180563 - L1 LINE L1 -2649 4916 3462 2211 194 22 18 chr3 44856718 44857214 -173179944 - L1 LINE L1 -2221 5344 4847 * 5880 127 83 4 chr3 44857182 44858247 -173178911 - L1 LINE L1 -3925 3640 2492 293 278 0 0 chr3 44858698 44858788 -173178370 + L1MC4 LINE L1 6614 6703 -1339 * 300 228 0 22 chr3 44858746 44858838 -173178320 - L1MC4 LINE L1 -1339 6703 6614 1812 57 0 4 chr3 44858867 44859097 -173178061 - L1PA7 LINE L1 -15 6139 5911 8493 86 17 1 chr3 44859208 44860975 -173176183 - L1PA7 LINE L1 -217 5937 4149 5605 193 28 6 chr3 44860958 44862816 -173174342 - L1MA4A LINE L1 -331 5972 4075 * 16143 158 19 8 chr3 44862916 44865842 -173171316 - L1P LINE L1 -837 5309 2355 5218 224 43 50 chr3 44865849 44867443 -173169715 - L1P3 LINE L1 -4510 1941 400 1961 120 67 0 chr3 44867443 44867726 -173169432 + AluSx SINE Alu 1 302 -10 5218 224 43 50 chr3 44867726 44868114 -173169044 - L1P3 LINE L1 -6051 400 11 1960 129 29 0 chr3 44868298 44868578 -173168580 - AluSx SINE Alu -24 288 1 26 0 0 0 chr3 44869380 44869406 -173167752 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr3 44869517 44869546 -173167612 + AT_rich Low_complexity Low_complexity 1 29 0 1465 217 65 12 chr3 44870321 44870662 -173166496 + L1MB7 LINE L1 5826 6184 0 33 56 0 0 chr3 44870705 44870759 -173166399 + AT_rich Low_complexity Low_complexity 1 54 0 21 36 0 0 chr3 44870817 44870845 -173166313 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 44871270 44871298 -173165860 + AT_rich Low_complexity Low_complexity 1 28 0 1452 173 111 15 chr3 44872105 44872446 -173164712 - MLT1A2 LTR MaLR 0 374 1 356 244 106 16 chr3 44872670 44872793 -173164365 + L1ME4a LINE L1 5985 6118 -3 6072 91 25 5 chr3 44872900 44874180 -173162978 - L1PA8A LINE L1 -1 6130 4840 310 318 14 84 chr3 44874730 44875016 -173162142 + L2 LINE L2 2152 2417 -897 44149 38 4 2 chr3 44875785 44881926 -173155232 + L1PA4 LINE L1 4 6152 -3 23 33 0 0 chr3 44881926 44881956 -173155202 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr3 44881974 44882002 -173155156 + AT_rich Low_complexity Low_complexity 1 28 0 1451 166 4 18 chr3 44882291 44882569 -173154589 - L1MB7 LINE L1 -16 6168 5895 1272 164 5 5 chr3 44882843 44883051 -173154107 + AluJo SINE Alu 87 294 -18 1021 216 118 31 chr3 44886529 44886886 -173150272 - LTR37A LTR ERV1 0 426 39 890 197 22 0 chr3 44887287 44887470 -173149688 + MER5A DNA MER1_type 3 189 0 795 174 33 33 chr3 44888111 44888295 -173148863 + L1MA9 LINE L1 6091 6274 -38 266 341 52 75 chr3 44888401 44888750 -173148408 - LTR16C LTR ERVL -67 424 84 219 356 83 0 chr3 44889034 44889166 -173147992 + MIR SINE MIR 22 164 -98 488 272 185 0 chr3 44889240 44889381 -173147777 - MIR SINE MIR -1 261 147 249 33 0 0 chr3 44889381 44889411 -173147747 + (CA)n Simple_repeat Simple_repeat 2 31 0 488 272 185 0 chr3 44889411 44889464 -173147694 - MIR SINE MIR -115 147 31 1530 240 179 7 chr3 44890570 44891116 -173146042 + L1MC4a LINE L1 6433 7072 -736 230 175 0 0 chr3 44891129 44891169 -173145989 + L1MC4 LINE L1 7211 7250 -792 302 257 129 24 chr3 44891170 44891380 -173145778 + L1MC4 LINE L1 7803 8034 -8 922 155 81 0 chr3 44891620 44891768 -173145390 + AluJb SINE Alu 138 297 -15 187 136 271 51 chr3 44892144 44892203 -173144955 - MIR SINE MIR -16 246 175 1467 33 0 16 chr3 44892243 44892425 -173144733 - L1PA3 LINE L1 0 6155 5977 5436 19 0 2 chr3 44892425 44893057 -173144101 + L1PA3 LINE L1 5357 5987 -168 390 42 0 0 chr3 44893601 44893649 -173143509 + (CA)n Simple_repeat Simple_repeat 1 48 0 211 161 0 143 chr3 44894229 44894262 -173142896 + L2 LINE L2 3249 3272 -41 1798 211 24 22 chr3 44894262 44894636 -173142522 + MLT2D LTR ERVL 1 378 -36 273 29 0 0 chr3 44894636 44894670 -173142488 + (CA)n Simple_repeat Simple_repeat 2 35 0 1798 211 24 22 chr3 44894670 44894708 -173142450 + MLT2D LTR ERVL 378 414 0 211 161 0 143 chr3 44894708 44894730 -173142428 + L2 LINE L2 3272 3296 -17 239 321 7 56 chr3 44895696 44895831 -173141327 + MIR SINE MIR 17 144 -64 488 251 256 18 chr3 44896445 44896664 -173140494 + Charlie2 DNA MER1_type 2 272 -2510 336 56 6 41 chr3 44896663 44896717 -173140441 + MLT1A2 LTR MaLR 312 459 -8 * 1002 284 59 22 chr3 44896780 44897136 -173140022 + L1MEc LINE L1 36 404 -5992 2715 200 69 99 chr3 44897136 44897224 -173139934 + L1ME1 LINE L1 5193 5282 -884 7750 17 1 1 chr3 44897224 44898618 -173138540 + L1PA2 LINE L1 4761 6154 -1 2715 200 69 99 chr3 44898618 44898728 -173138430 + L1ME1 LINE L1 5282 5394 -772 1792 175 0 22 chr3 44898728 44899043 -173138115 + AluJo SINE Alu 1 308 -4 2715 200 69 99 chr3 44899043 44899833 -173137325 + L1ME1 LINE L1 5394 6161 -5 185 81 0 54 chr3 44900791 44900828 -173136330 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 23 54 0 0 chr3 44901399 44901436 -173135722 + AT_rich Low_complexity Low_complexity 1 37 0 1732 233 30 4 chr3 44901848 44902307 -173134851 - Charlie4a DNA MER1_type -8 500 30 240 35 0 0 chr3 44902903 44902932 -173134226 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 270 323 217 22 chr3 44903535 44903811 -173133347 + L3 LINE CR1 1073 1402 -175 1568 234 17 34 chr3 44904194 44904612 -173132546 + L1MCb LINE L1 1 411 -5634 1290 265 52 7 chr3 44904618 44905082 -173132076 + L1M4 LINE L1 4076 4560 -1586 533 187 22 45 chr3 44905054 44905188 -173131970 + L1MC3 LINE L1 7654 7784 -1 * 201 244 26 51 chr3 44905655 44905733 -173131425 + CT-rich Low_complexity Low_complexity 2 77 0 1727 224 104 38 chr3 44906386 44906971 -173130187 - MLT1E2 LTR MaLR -2 624 1 530 270 95 56 chr3 44907048 44907300 -173129858 - MIR SINE MIR 0 262 1 182 308 90 13 chr3 44907560 44907638 -173129520 + L2 LINE L2 3230 3313 0 239 245 0 0 chr3 44907793 44907842 -173129316 + (CATATA)n Simple_repeat Simple_repeat 5 53 0 379 296 161 0 chr3 44908467 44908653 -173128505 - MIR SINE MIR -31 231 16 1990 143 5 16 chr3 44908690 44909062 -173128096 + L1MA3 LINE L1 4269 4636 -1510 * 6296 126 38 6 chr3 44909039 44910148 -173127010 + L1MA3 LINE L1 5163 6305 0 212 0 36 0 chr3 44910679 44910707 -173126451 + (CA)n Simple_repeat Simple_repeat 1 29 0 261 0 57 0 chr3 44911098 44911133 -173126025 + (TTTTA)n Simple_repeat Simple_repeat 2 180 0 1838 149 40 0 chr3 44911133 44911408 -173125750 - AluSq SINE Alu -27 286 1 26 0 0 0 chr3 44911408 44911434 -173125724 + AT_rich Low_complexity Low_complexity 1 26 0 581 317 135 43 chr3 44911740 44912382 -173124776 - L2 LINE L2 -3 3310 2603 187 343 14 14 chr3 44912669 44912742 -173124416 + MIR3 SINE MIR 88 160 -48 473 308 97 0 chr3 44912901 44913086 -173124072 + L2 LINE L2 3111 3313 0 869 148 39 13 chr3 44914335 44914490 -173122668 + MLT1A1 LTR MaLR 1 159 -206 2339 249 35 92 chr3 44914506 44915654 -173121504 + L1M1 LINE L1 21 2172 -5393 6846 53 11 3 chr3 44915654 44917031 -173120127 + L1PA7 LINE L1 4755 6141 -13 2339 249 35 92 chr3 44917031 44917256 -173119902 + L1M1 LINE L1 2172 2408 -5157 1173 248 21 176 chr3 44917258 44917948 -173119210 - L1M1 LINE L1 -5559 2006 317 * 9735 192 86 39 chr3 44917933 44921125 -173116033 + L1M1 LINE L1 2391 5814 -1751 414 0 0 0 chr3 44921125 44921171 -173115987 + (TG)n Simple_repeat Simple_repeat 2 47 0 9735 192 86 39 chr3 44921171 44921836 -173115322 + L1M1 LINE L1 5814 6446 -1119 577 219 11 190 chr3 44921836 44922120 -173115038 + LTR28 LTR ERV1 1 894 -841 477 258 38 57 chr3 44922123 44922348 -173114810 + MER61D LTR ERV1 335 1305 -12 3826 208 32 18 chr3 44922437 44923312 -173113846 + MER61D-int LTR ERV1 1 887 -6204 17869 148 19 11 chr3 44923334 44926519 -173110639 + MER61D-int LTR ERV1 1003 4477 -2614 1897 188 30 29 chr3 44926519 44927077 -173110081 - MLT2A2 LTR ERVL 0 554 1 16498 114 13 33 chr3 44927077 44929751 -173107407 + MER52-int LTR ERV1 4473 7091 0 313 240 0 13 chr3 44929762 44929837 -173107321 + MER52C LTR ERV1 612 685 -593 1059 224 5 9 chr3 44929899 44930122 -173107036 + MLT1A1 LTR MaLR 144 365 0 226 387 32 24 chr3 44930272 44930396 -173106762 + L2 LINE L2 3137 3261 -11 390 115 0 0 chr3 44930751 44930769 -173106389 + (TG)n Simple_repeat Simple_repeat 1 79 0 390 115 0 0 chr3 44930769 44930830 -173106328 + (TG)n Simple_repeat Simple_repeat 2 62 0 23 0 0 0 chr3 44931582 44931605 -173105553 + AT_rich Low_complexity Low_complexity 1 23 0 309 184 12 92 chr3 44931707 44931744 -173105414 - MLT1H LTR MaLR -400 149 111 872 249 29 0 chr3 44931744 44931917 -173105241 + MER45A DNA AcHobo 1 178 0 309 184 12 92 chr3 44931917 44932000 -173105158 - MLT1H LTR MaLR -438 111 62 356 231 7 48 chr3 44932035 44932144 -173105014 - MIR SINE MIR -36 172 66 260 308 50 0 chr3 44933093 44933213 -173103945 - MIR SINE MIR -15 247 122 5120 189 10 12 chr3 44933215 44934116 -173103042 - L1PA16 LINE L1 -16 6150 5248 3440 208 29 75 chr3 44934116 44935132 -173102026 - LTR5 LTR ERVK 0 969 1 5120 189 10 12 chr3 44935132 44936248 -173100910 - L1PA16 LINE L1 -918 5248 4147 812 283 108 25 chr3 44936388 44936831 -173100327 - MLT1H LTR MaLR -26 523 1 184 62 125 0 chr3 44937151 44937183 -173099975 + L2 LINE L2 3221 3256 -16 201 229 0 0 chr3 44938073 44938121 -173099037 + (TA)n Simple_repeat Simple_repeat 1 48 0 329 295 42 91 chr3 44938123 44938240 -173098918 - L1MC4a LINE L1 -1836 5972 5851 1601 179 75 20 chr3 44938240 44938586 -173098572 - MLT1A1 LTR MaLR 0 365 1 329 295 42 91 chr3 44938586 44938753 -173098405 - L1MC4a LINE L1 -1957 5851 5702 304 350 105 0 chr3 44938804 44939004 -173098154 + MIR SINE MIR 39 259 -3 308 308 53 58 chr3 44939154 44939362 -173097796 - L1MC4a LINE L1 -2334 5474 5268 311 317 153 36 chr3 44939572 44939821 -173097337 - L2 LINE L2 -196 3117 2840 1837 23 0 0 chr3 44940009 44940224 -173096934 + L1PA2 LINE L1 5941 6155 0 210 185 37 0 chr3 44940540 44940594 -173096564 + (TG)n Simple_repeat Simple_repeat 2 57 0 2205 196 28 74 chr3 44941217 44941798 -173095360 + MLT2B3 LTR ERVL 1 554 0 320 322 42 61 chr3 44942351 44942761 -173094397 - LTR16C LTR ERVL -2 489 88 185 222 16 0 chr3 44943494 44943557 -173093601 + (TA)n Simple_repeat Simple_repeat 1 64 0 230 318 114 39 chr3 44944068 44944348 -173092810 - L1MC/D LINE L1 -1968 5840 5540 233 175 53 18 chr3 44944505 44944562 -173092596 - MER46C DNA MER2_type -225 113 55 1427 199 96 14 chr3 44944722 44945088 -173092070 - MSTD LTR MaLR 0 396 1 25 0 0 0 chr3 44945634 44945659 -173091499 + AT_rich Low_complexity Low_complexity 1 25 0 417 281 42 16 chr3 44946139 44946331 -173090827 - L1M4c LINE L1 -4921 1463 1267 28 79 0 0 chr3 44946381 44946444 -173090714 + AT_rich Low_complexity Low_complexity 1 63 0 24 53 0 0 chr3 44946471 44946509 -173090649 + AT_rich Low_complexity Low_complexity 1 38 0 474 199 46 0 chr3 44946626 44946757 -173090401 + L1M4 LINE L1 4114 4250 -1896 467 253 101 56 chr3 44946850 44947045 -173090113 + L1M4 LINE L1 3401 3586 -2560 2182 86 38 3 chr3 44947045 44947336 -173089822 + AluY SINE Alu 1 301 -10 467 253 101 56 chr3 44947336 44947496 -173089662 + L1M4 LINE L1 3586 3772 -2374 235 206 14 14 chr3 44947568 44947641 -173089517 + L1MDa LINE L1 2522 2594 -3970 3474 219 128 27 chr3 44947738 44949779 -173087379 + L1MDa LINE L1 30 2419 -4326 3107 172 65 39 chr3 44949809 44951678 -173085480 + L1MC3 LINE L1 5825 7785 0 482 296 21 18 chr3 44951705 44951985 -173085173 + L1MDa LINE L1 2713 2993 -3571 1795 207 31 8 chr3 44952261 44952618 -173084540 - MLT1A1 LTR MaLR 0 365 1 338 226 118 10 chr3 44952807 44952909 -173084249 + MIR SINE MIR 113 225 -37 393 39 0 0 chr3 44953844 44953895 -173083263 + (TG)n Simple_repeat Simple_repeat 2 52 0 975 106 0 0 chr3 44953999 44954131 -173083027 - L1P3 LINE L1 -6322 139 8 21 0 0 0 chr3 44954744 44954765 -173082393 + AT_rich Low_complexity Low_complexity 1 21 0 258 317 0 12 chr3 44955062 44955144 -173082014 - MIR3 SINE MIR -18 190 110 271 178 0 0 chr3 44955961 44956006 -173081152 - MIR3 SINE MIR -51 157 113 818 301 70 69 chr3 44956281 44956878 -173080280 + L2 LINE L2 72 669 -2645 516 345 25 25 chr3 44957105 44957424 -173079734 + HAL1 LINE L1 292 610 -1897 527 230 70 62 chr3 44957667 44957904 -173079254 + HAL1 LINE L1 840 1081 -1426 1853 170 10 3 chr3 44957904 44958204 -173078954 + AluJb SINE Alu 3 304 -8 527 230 70 62 chr3 44958204 44958223 -173078935 + HAL1 LINE L1 1081 1098 -1409 574 182 0 0 chr3 44960050 44960160 -173076998 - L1PB4 LINE L1 -100 6056 5947 1042 131 0 34 chr3 44960183 44960359 -173076799 - L1PA13 LINE L1 -11 6152 5983 328 231 74 19 chr3 44960424 44960532 -173076626 - L2 LINE L2 -3 3310 3197 913 280 42 51 chr3 44960532 44961047 -173076111 - MER115 DNA AcHobo -18 675 114 7722 23 2 0 chr3 44961176 44962466 -173074692 - L1PA3 LINE L1 -3 6152 4861 469 219 15 29 chr3 44962662 44962799 -173074359 - L1M4 LINE L1 -2713 3433 3299 503 86 0 0 chr3 44963535 44963605 -173073553 - L1P4 LINE L1 -677 5484 5415 2273 69 0 36 chr3 44963748 44964052 -173073106 + AluY SINE Alu 1 293 -18 4056 117 8 2 chr3 44964546 44965151 -173072007 - MER4B LTR ERV1 0 610 2 477 286 32 8 chr3 44965486 44965612 -173071546 - LTR16A LTR ERVL -297 153 25 746 357 35 27 chr3 44965745 44966372 -173070786 - HERV16 LTR ERVL -388 5376 4745 714 304 35 13 chr3 44966384 44966416 -173070742 - HERV16 LTR ERVL -4045 951 921 270 73 0 0 chr3 44966416 44966457 -173070701 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 714 304 35 13 chr3 44966457 44966654 -173070504 - HERV16 LTR ERVL -4075 921 717 8808 168 41 56 chr3 44966695 44969569 -173067589 - L1M1 LINE L1 -4431 3134 2 414 268 67 37 chr3 44971607 44971771 -173065387 + MIR SINE MIR 50 218 -44 1954 113 0 4 chr3 44972118 44972383 -173064775 - AluSg SINE Alu -46 264 1 1710 97 9 0 chr3 44972383 44972611 -173064547 - AluSp SINE Alu -2 311 82 345 279 121 21 chr3 44972917 44973057 -173064101 - MIR3 SINE MIR -15 193 40 732 186 29 7 chr3 44973405 44973545 -173063613 + MLT1D LTR MaLR 363 505 0 979 226 23 14 chr3 44973725 44973942 -173063216 - MER20 DNA MER1_type 0 219 1 25 0 0 0 chr3 44974028 44974053 -173063105 + AT_rich Low_complexity Low_complexity 1 25 0 642 306 17 12 chr3 44974126 44974299 -173062859 - MER5A DNA MER1_type 0 189 16 7090 185 72 27 chr3 44974503 44974650 -173062508 - L1MC3 LINE L1 0 7785 7646 2382 146 23 32 chr3 44974650 44975082 -173062076 - MSTA LTR MaLR 0 428 1 7090 185 72 27 chr3 44975082 44976551 -173060607 - L1MC3 LINE L1 -139 7646 6095 1012 292 94 49 chr3 44976585 44976952 -173060206 - L1M4 LINE L1 -2689 3457 3108 2157 98 27 24 chr3 44976952 44977247 -173059911 - AluSq SINE Alu -17 296 1 1012 292 94 49 chr3 44977247 44977795 -173059363 - L1M4 LINE L1 -3038 3108 2446 263 246 43 0 chr3 44977797 44977866 -173059292 - HAL1 LINE L1 -1082 1425 1354 319 196 32 18 chr3 44977873 44977985 -173059173 - Alu SINE Alu 0 300 247 518 257 57 46 chr3 44977987 44978162 -173058996 - HAL1 LINE L1 -1215 1292 1116 211 282 39 48 chr3 44978218 44978321 -173058837 + L2 LINE L2 2907 3008 -264 290 292 128 53 chr3 44979183 44979426 -173057732 - MIR SINE MIR 0 262 2 12300 191 23 31 chr3 44979459 44985002 -173052156 - L1PB1 LINE L1 0 6867 1392 733 244 19 14 chr3 44984978 44985187 -173051971 - L1PB1 LINE L1 -6646 217 8 * 195 299 35 23 chr3 44985840 44985927 -173051231 + MIR SINE MIR 1 88 -174 372 300 62 0 chr3 44989653 44989783 -173047375 - MIR SINE MIR -81 181 44 633 256 130 10 chr3 44991188 44991395 -173045763 + LTR16A1 LTR ERVL 226 457 0 798 271 89 7 chr3 44992846 44993138 -173044020 + L1ME3A LINE L1 5847 6162 -8 1539 173 92 46 chr3 44993920 44994290 -173042868 - MLT1B LTR MaLR -2 388 2 197 246 0 53 chr3 44995160 44995217 -173041941 + MIR SINE MIR 91 144 -118 194 277 21 0 chr3 44995186 44995233 -173041925 + MIR3 SINE MIR 115 162 -46 * 298 304 94 72 chr3 44995308 44995489 -173041669 - MIR3 SINE MIR 0 262 78 36 62 0 0 chr3 44996933 44996997 -173040161 + AT_rich Low_complexity Low_complexity 1 64 0 535 302 42 90 chr3 44997354 44997811 -173039347 - LTR16A1 LTR ERVL -9 448 14 595 270 56 92 chr3 44997840 44997878 -173039280 - L2 LINE L2 -1 3312 3274 1326 180 31 13 chr3 44997878 44998195 -173038963 + MER33 DNA MER1_type 2 324 0 595 270 56 92 chr3 44998195 44998515 -173038643 - L2 LINE L2 -39 3274 2967 293 228 102 31 chr3 45000816 45000943 -173036215 + MIR SINE MIR 70 205 -57 238 279 0 0 chr3 45001222 45001290 -173035868 + L1ME LINE L1 5382 5449 -717 2186 115 0 7 chr3 45002141 45002437 -173034721 + AluSx SINE Alu 1 294 -18 1514 178 54 18 chr3 45003554 45003830 -173033328 + AluJo SINE Alu 1 286 -26 207 406 0 0 chr3 45005830 45005926 -173031232 + L2 LINE L2 3166 3261 -52 565 294 115 2 chr3 45006417 45006633 -173030525 + MIR SINE MIR 25 259 -3 23 0 0 0 chr3 45006676 45006699 -173030459 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 45007121 45007142 -173030016 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr3 45007534 45007559 -173029599 + (T)n Simple_repeat Simple_repeat 1 25 0 187 267 0 0 chr3 45007768 45007813 -173029345 - L2 LINE L2 -13 3259 3215 260 353 85 30 chr3 45007951 45008152 -173029006 + MIR SINE MIR 25 236 -26 33 85 0 0 chr3 45008910 45008992 -173028166 + AT_rich Low_complexity Low_complexity 1 82 0 1431 269 83 57 chr3 45009025 45010843 -173026315 + L1ME3A LINE L1 4233 6097 -73 26 30 0 0 chr3 45010876 45010909 -173026249 + AT_rich Low_complexity Low_complexity 1 33 0 327 201 122 31 chr3 45011072 45011189 -173025969 - L1MC/D LINE L1 -928 5500 5377 192 77 0 0 chr3 45011195 45011221 -173025937 + (TTA)n Simple_repeat Simple_repeat 2 27 0 278 256 23 70 chr3 45011272 45011401 -173025757 + MIR SINE MIR 71 193 -69 184 395 106 16 chr3 45011590 45012015 -173025143 + L2 LINE L2 2510 2972 -342 213 121 0 0 chr3 45012267 45012300 -173024858 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 731 87 8 0 chr3 45012452 45012578 -173024580 + (TAGA)n Simple_repeat Simple_repeat 4 130 0 300 91 0 0 chr3 45014263 45014307 -173022851 + (CA)n Simple_repeat Simple_repeat 1 44 0 5371 252 63 33 chr3 45015405 45017920 -173019238 - L1MEc LINE L1 -1726 4489 1930 562 271 191 5 chr3 45018801 45019011 -173018147 + MIR SINE MIR 1 249 -13 228 135 0 0 chr3 45019086 45019123 -173018035 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 187 325 38 25 chr3 45019127 45019207 -173017951 - L2 LINE L2 -4 3268 3188 7450 30 1 6 chr3 45019466 45021024 -173016134 + L1PA5 LINE L1 4596 6147 -7 24 0 0 0 chr3 45021024 45021048 -173016110 + AT_rich Low_complexity Low_complexity 1 24 0 273 274 52 74 chr3 45022638 45022773 -173014385 - MIR SINE MIR -123 139 8 286 253 84 0 chr3 45022825 45022908 -173014250 + L2 LINE L2 3224 3313 0 441 239 64 0 chr3 45023199 45023308 -173013850 - LTR16A1 LTR ERVL -7 450 335 609 342 27 42 chr3 45023677 45024083 -173013075 - L2 LINE L2 -2 3311 2912 258 364 88 57 chr3 45024246 45024543 -173012615 - L2 LINE L2 -49 3223 2918 263 299 41 10 chr3 45024732 45024829 -173012329 + MER5A DNA MER1_type 1 100 -89 312 253 11 11 chr3 45025078 45025165 -173011993 - MIR SINE MIR -85 177 91 496 293 143 45 chr3 45025386 45025624 -173011534 + L1ME4a LINE L1 5381 5594 -527 891 198 35 0 chr3 45025624 45025796 -173011362 - MER45A DNA AcHobo 0 178 1 496 293 143 45 chr3 45025796 45026131 -173011027 + L1ME4a LINE L1 5594 6010 -111 3347 139 44 19 chr3 45026351 45026939 -173010219 + LTR26 LTR ERV1 1 603 0 8685 183 9 22 chr3 45027196 45029428 -173007730 + L1PA16 LINE L1 3287 5473 -693 2321 100 0 28 chr3 45029428 45029748 -173007410 + AluSx SINE Alu 2 312 0 8685 183 9 22 chr3 45029748 45030425 -173006733 + L1PA16 LINE L1 5473 6157 -9 5467 23 0 0 chr3 45030825 45031472 -173005686 - L1PA2 LINE L1 -1280 4866 4220 7822 17 0 0 chr3 45031472 45032767 -173004391 + L1PA2 LINE L1 4860 6154 -1 337 314 29 36 chr3 45032920 45033060 -173004098 + MIR SINE MIR 1 139 -123 306 311 79 45 chr3 45033302 45033569 -173003589 + L1MC4a LINE L1 3589 3864 -2282 236 172 17 0 chr3 45033874 45033932 -173003226 + CT-rich Low_complexity Low_complexity 3 61 0 599 315 63 28 chr3 45034139 45034786 -173002372 + L1MC4a LINE L1 5264 5933 -1875 2427 94 3 6 chr3 45035769 45036120 -173001038 + L1PA13 LINE L1 5814 6163 0 1831 156 12 22 chr3 45036637 45036957 -173000201 - MER2 DNA MER2_type -27 318 2 22 35 0 0 chr3 45037733 45037762 -172999396 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr3 45038285 45038306 -172998852 + (TA)n Simple_repeat Simple_repeat 1 21 0 1967 120 29 0 chr3 45038309 45038583 -172998575 - AluSp SINE Alu -31 282 1 38 81 0 0 chr3 45039803 45039890 -172997268 + AT_rich Low_complexity Low_complexity 1 87 0 441 249 197 42 chr3 45040612 45040780 -172996378 - HAL1 LINE L1 -807 1700 1491 1849 159 27 0 chr3 45040780 45041075 -172996083 - AluJb SINE Alu -9 303 1 441 249 197 42 chr3 45041075 45041119 -172996039 - HAL1 LINE L1 -1016 1491 1455 347 0 0 0 chr3 45041995 45042037 -172995121 - L1PA3 LINE L1 -5 6150 6109 16963 192 26 28 chr3 45042906 45047301 -172989857 + L1PA10 LINE L1 1 4538 -1923 6073 74 54 16 chr3 45047322 45048760 -172988398 + L1PA10 LINE L1 4993 6478 -5 225 282 12 35 chr3 45048995 45049080 -172988078 - L1ME LINE L1 -473 5648 5566 740 196 0 8 chr3 45049153 45049286 -172987872 - FLAM_A SINE Alu -1 132 1 245 289 13 13 chr3 45049629 45049705 -172987453 + MIR SINE MIR 78 153 -55 692 308 103 34 chr3 45049922 45050367 -172986791 + L2 LINE L2 2827 3302 -11 300 70 0 0 chr3 45052665 45052708 -172984450 + (CA)n Simple_repeat Simple_repeat 2 44 0 433 286 145 38 chr3 45053567 45054071 -172983087 + L1M4 LINE L1 4289 4846 -1300 30 0 0 0 chr3 45054158 45054188 -172982970 + AT_rich Low_complexity Low_complexity 1 30 0 2280 109 0 0 chr3 45054407 45054709 -172982449 + AluSg SINE Alu 1 302 -8 6586 85 17 3 chr3 45055150 45056935 -172980223 - L1PA11 LINE L1 0 6174 4379 5814 239 22 16 chr3 45056951 45058243 -172978915 - L1PA12 LINE L1 -6277 1304 6 2385 83 0 13 chr3 45058864 45059176 -172977982 - AluY SINE Alu -3 308 1 495 298 82 80 chr3 45059415 45059791 -172977367 + MLT2E LTR ERVL 252 628 0 337 333 92 30 chr3 45060188 45060623 -172976535 + L2 LINE L2 612 1073 -2241 2167 127 0 0 chr3 45061731 45062030 -172975128 - AluY SINE Alu -12 299 1 193 211 77 0 chr3 45062450 45062502 -172974656 + L2 LINE L2 2672 2727 -587 771 213 58 0 chr3 45063047 45063202 -172973956 + FRAM SINE Alu 1 161 -15 181 217 174 0 chr3 45063287 45063333 -172973825 + L2 LINE L2 3242 3295 -18 225 276 0 17 chr3 45064030 45064088 -172973070 - L2 LINE L2 -80 3192 3136 247 262 103 0 chr3 45064856 45064963 -172972195 + L1ME LINE L1 5696 5813 -308 29 60 0 0 chr3 45065202 45065252 -172971906 + AT_rich Low_complexity Low_complexity 1 50 0 916 258 64 39 chr3 45065627 45065910 -172971248 - MLT1H LTR MaLR -188 361 72 192 316 18 70 chr3 45066096 45066210 -172970948 + L2 LINE L2 2988 3095 -177 326 343 53 51 chr3 45066594 45066950 -172970208 - L1M4 LINE L1 -2632 3514 3158 311 313 33 71 chr3 45066972 45067183 -172969975 - L1ME3A LINE L1 -5 6165 5963 314 256 45 30 chr3 45067343 45067476 -172969682 - L1ME3A LINE L1 -1994 5814 5680 1488 209 29 85 chr3 45067492 45068019 -172969139 + Charlie4a DNA MER1_type 1 497 -11 1205 299 22 32 chr3 45068064 45068468 -172968690 - MLT1I LTR MaLR -4 405 6 425 277 59 28 chr3 45068469 45068782 -172968376 - L1ME3A LINE L1 -552 5618 5283 3103 247 69 38 chr3 45070407 45071491 -172965667 + L1MC/D LINE L1 264 1381 -5226 214 188 12 38 chr3 45071532 45071612 -172965546 + (TATAA)n Simple_repeat Simple_repeat 3 80 0 185 60 40 40 chr3 45071631 45071681 -172965477 + (TTATA)n Simple_repeat Simple_repeat 5 54 0 477 249 110 20 chr3 45071691 45071936 -172965222 + L1MC/D LINE L1 1288 1554 -4872 1343 258 71 48 chr3 45071936 45071959 -172965199 + MLT1E2 LTR MaLR 3 24 -602 2094 124 138 5 chr3 45071959 45072337 -172964821 - MSTA LTR MaLR 0 428 1 1343 258 71 48 chr3 45072337 45072923 -172964235 + MLT1E2 LTR MaLR 24 626 0 260 258 21 31 chr3 45072925 45073022 -172964136 + HAL1 LINE L1 1516 1611 -896 * 2592 232 23 33 chr3 45072996 45073952 -172963206 + L1MC/D LINE L1 4581 5523 -746 1141 281 123 12 chr3 45073963 45074741 -172962417 + L1ME3A LINE L1 4027 4891 -1255 2579 256 39 24 chr3 45074924 45075786 -172961372 + L1ME3A LINE L1 5285 6159 -11 26 50 0 0 chr3 45077118 45077158 -172960000 + AT_rich Low_complexity Low_complexity 1 40 0 351 0 0 0 chr3 45077353 45077392 -172959766 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 411 302 73 71 chr3 45077413 45077959 -172959199 + L1ME3A LINE L1 2737 3283 -3143 302 167 83 0 chr3 45078013 45078097 -172959061 + L1ME3A LINE L1 4140 4230 -2196 1928 155 35 62 chr3 45078131 45078287 -172958871 + MLT1B LTR MaLR 1 160 -230 1238 188 63 84 chr3 45078287 45078728 -172958430 + MSTB1 LTR MaLR 1 432 0 1928 155 35 62 chr3 45078728 45078972 -172958186 + MLT1B LTR MaLR 160 390 0 668 324 71 36 chr3 45078981 45079787 -172957371 + L1ME3A LINE L1 4293 5126 -1300 2725 125 19 0 chr3 45080068 45080501 -172956657 + L1MA5A LINE L1 5857 6297 0 718 251 128 80 chr3 45080607 45081233 -172955925 + L1ME3A LINE L1 5573 6228 -222 233 266 0 0 chr3 45081690 45081754 -172955404 + L1MEc LINE L1 3992 4055 -2371 4973 188 28 31 chr3 45082154 45082460 -172954698 - L1MC3 LINE L1 -7 7778 7473 2260 89 3 10 chr3 45082460 45082764 -172954394 - AluSg SINE Alu -8 302 1 4973 188 28 31 chr3 45082764 45083533 -172953625 - L1MC3 LINE L1 -312 7473 6706 457 184 88 61 chr3 45083541 45083688 -172953470 - MER106A DNA MER1_type -85 151 1 460 258 135 26 chr3 45083998 45084227 -172952931 + L1ME2 LINE L1 5902 6155 -9 689 240 157 29 chr3 45084241 45084559 -172952599 + MLT2C1 LTR ERVL 5 394 -3 250 294 65 25 chr3 45085232 45085433 -172951725 + L1MEc LINE L1 5471 5679 -747 1173 170 71 53 chr3 45085740 45086065 -172951093 - MER33 DNA MER1_type 0 324 1 349 287 87 59 chr3 45086167 45086453 -172950705 - L1M4 LINE L1 -2791 3355 3062 252 337 0 12 chr3 45086588 45086674 -172950484 + CT-rich Low_complexity Low_complexity 1 85 0 348 300 25 50 chr3 45086679 45086839 -172950319 - HAL1 LINE L1 -1230 1277 1122 245 265 34 14 chr3 45087363 45087510 -172949648 + A-rich Low_complexity Low_complexity 2 151 0 34 28 0 56 chr3 45087633 45087704 -172949454 + AT_rich Low_complexity Low_complexity 1 67 0 2192 237 55 38 chr3 45087709 45087801 -172949357 - MER77 LTR ERV1 0 605 516 4335 72 9 2 chr3 45087801 45088371 -172948787 - L1PA7 LINE L1 -6 6148 5575 2192 237 55 38 chr3 45088371 45088865 -172948293 - MER77 LTR ERV1 -89 516 9 183 139 0 0 chr3 45088875 45088911 -172948247 + (GAAAA)n Simple_repeat Simple_repeat 5 40 0 340 359 60 0 chr3 45090117 45090234 -172946924 + MIR3 SINE MIR 33 156 -52 412 290 76 7 chr3 45090284 45090429 -172946729 - MIR SINE MIR -17 245 91 1731 192 51 13 chr3 45090784 45091147 -172946011 + MLT2B2 LTR ERVL 1 397 0 409 250 43 0 chr3 45091499 45091591 -172945567 + L2 LINE L2 3213 3308 -5 2906 102 51 2 chr3 45091681 45092113 -172945045 - MLT2A2 LTR ERVL 0 453 1 327 246 120 7 chr3 45092590 45092732 -172944426 - MER103 DNA DNA -8 158 1 255 335 128 23 chr3 45092776 45092994 -172944164 + MIR SINE MIR 20 260 -2 233 188 42 0 chr3 45093440 45093488 -172943670 + L1MC4 LINE L1 6653 6702 -1340 259 250 71 0 chr3 45093489 45093573 -172943585 + L1MC4 LINE L1 6614 6703 -1339 235 286 71 0 chr3 45093569 45093653 -172943505 - L1MC4 LINE L1 -1339 6703 6614 * 234 324 28 0 chr3 45093654 45093725 -172943433 + (TATATG)n Simple_repeat Simple_repeat 2 74 0 240 286 71 0 chr3 45093725 45093809 -172943349 - L1MC4 LINE L1 -1339 6703 6614 244 255 0 82 chr3 45093811 45093909 -172943249 - L1MC4 LINE L1 -1339 6703 6614 * 268 311 0 0 chr3 45093857 45093947 -172943211 + L1MC4 LINE L1 6614 6703 -1339 210 250 0 0 chr3 45093947 45094003 -172943155 + (TATATG)n Simple_repeat Simple_repeat 6 61 0 288 206 0 0 chr3 45094003 45094066 -172943092 + L1MC4 LINE L1 6640 6702 -1340 298 253 23 0 chr3 45094067 45094154 -172943004 + L1MC4 LINE L1 6614 6702 -1340 239 247 35 0 chr3 45094126 45094211 -172942947 - L1MC4 LINE L1 -1340 6702 6615 * 419 194 10 0 chr3 45094217 45094315 -172942843 + (TA)n Simple_repeat Simple_repeat 2 100 0 226 211 0 0 chr3 45094315 45094367 -172942791 - L1MC4 LINE L1 -1339 6703 6652 366 23 0 0 chr3 45094525 45094568 -172942590 + (TG)n Simple_repeat Simple_repeat 2 44 0 1521 219 43 12 chr3 45094569 45094894 -172942264 + MER58B DNA MER1_type 7 341 0 676 279 50 57 chr3 45095811 45096267 -172940891 + LTR16A1 LTR ERVL 5 457 0 456 256 45 15 chr3 45097534 45097667 -172939491 + L1ME2 LINE L1 6001 6137 -27 21 0 0 0 chr3 45097728 45097749 -172939409 + AT_rich Low_complexity Low_complexity 1 21 0 451 204 194 0 chr3 45097872 45097980 -172939178 + FLAM_C SINE Alu 1 129 -14 1906 177 36 35 chr3 45098794 45099261 -172937897 - MLT2D LTR ERVL 0 414 2 554 210 40 0 chr3 45099767 45099891 -172937267 - LTR16A LTR ERVL 0 450 322 1974 179 10 28 chr3 45101494 45101891 -172935267 - MLT1B LTR MaLR 0 390 1 695 286 70 56 chr3 45102465 45102947 -172934211 - MLT1J LTR MaLR 0 511 23 2417 215 16 33 chr3 45102947 45103372 -172933786 + MER67A LTR ERV1 1 417 -126 1294 229 27 56 chr3 45103372 45103748 -172933410 + MLT1A1 LTR MaLR 1 365 0 2417 215 16 33 chr3 45103748 45103870 -172933288 + MER67A LTR ERV1 417 539 -4 1250 178 91 86 chr3 45104383 45104466 -172932692 + MLT1B LTR MaLR 6 87 -303 2388 126 62 7 chr3 45104466 45104872 -172932286 - MSTA LTR MaLR 0 428 1 1250 178 91 86 chr3 45104872 45105171 -172931987 + MLT1B LTR MaLR 87 390 0 719 207 7 14 chr3 45105343 45105483 -172931675 - MER20 DNA MER1_type -1 218 80 521 309 106 19 chr3 45105483 45105690 -172931468 + L2 LINE L2 2864 3088 -225 343 270 22 0 chr3 45105696 45105785 -172931373 - MER20 DNA MER1_type -127 92 2 455 311 88 5 chr3 45106604 45106797 -172930361 - MIR SINE MIR -53 209 1 1610 246 105 22 chr3 45107161 45108077 -172929081 - L1M4b LINE L1 -3547 3410 2475 22 56 0 0 chr3 45108122 45108158 -172929000 + AT_rich Low_complexity Low_complexity 1 36 0 2768 224 20 65 chr3 45108264 45109094 -172928064 - L1M4b LINE L1 -4588 2371 1602 2111 136 0 0 chr3 45109094 45109396 -172927762 - AluSg SINE Alu -2 308 7 2768 224 20 65 chr3 45109396 45109857 -172927301 - L1M4b LINE L1 -5357 1602 1122 1022 301 98 21 chr3 45109867 45110116 -172927042 + L2 LINE L2 2896 3187 -126 297 109 0 0 chr3 45110116 45110162 -172926996 + (TTA)n Simple_repeat Simple_repeat 3 48 0 1022 301 98 21 chr3 45110162 45110298 -172926860 + L2 LINE L2 3187 3311 -2 247 336 66 40 chr3 45110724 45111043 -172926115 + L2 LINE L2 2716 3059 -213 804 243 25 23 chr3 45111189 45111447 -172925711 - MLT1J2 LTR MaLR -177 269 1 205 259 259 12 chr3 45111537 45111622 -172925536 + L2 LINE L2 3151 3256 -16 250 98 39 20 chr3 45111633 45111684 -172925474 - MER116 DNA Mariner -13 67 16 254 383 61 0 chr3 45112001 45112116 -172925042 - L2 LINE L2 -8 3264 3143 239 330 107 0 chr3 45112129 45112232 -172924926 - L2 LINE L2 -607 2707 2594 221 261 0 0 chr3 45113548 45113594 -172923564 - MIR SINE MIR -66 142 97 37093 41 4 3 chr3 45113891 45120018 -172917140 + L1PA4 LINE L1 11 6147 -8 279 48 24 0 chr3 45120209 45120251 -172916907 - MADE1 DNA Mariner -2 78 36 1385 301 71 4 chr3 45120892 45121400 -172915758 - ERVL LTR ERVL -1149 4615 4074 774 164 0 0 chr3 45121889 45122035 -172915123 + GA-rich Low_complexity Low_complexity 3 148 0 2322 104 0 0 chr3 45122319 45122617 -172914541 + AluSc SINE Alu 1 298 -11 304 329 0 0 chr3 45124539 45124624 -172912534 - MIR SINE MIR -13 249 165 210 319 66 22 chr3 45125553 45125644 -172911514 - L2 LINE L2 -9 3263 3169 190 367 44 11 chr3 45125867 45125957 -172911201 + MIR SINE MIR 1 93 -169 471 274 114 10 chr3 45126044 45126245 -172910913 + MLT1H LTR MaLR 70 291 -258 247 291 55 8 chr3 45126291 45126418 -172910740 + MLT1H LTR MaLR 454 586 -4 487 311 93 0 chr3 45126426 45126587 -172910571 + MIR SINE MIR 85 260 -2 420 301 62 14 chr3 45127826 45127972 -172909186 + MIR SINE MIR 73 225 -37 1837 144 100 3 chr3 45127973 45128293 -172908865 - MER83B LTR ERV1 0 378 28 2218 159 0 3 chr3 45128303 45128694 -172908464 - MER83B-int LTR ERV1 -11 6459 4527 397 319 56 32 chr3 45128776 45129248 -172907910 - MER83B-int LTR ERV1 -285 7107 6542 547 294 61 0 chr3 45130211 45130456 -172906702 - MER83B-int LTR ERV1 -1957 2328 2069 502 318 46 30 chr3 45130887 45131402 -172905756 - MER83B-int LTR ERV1 -2070 6556 4941 2123 306 31 29 chr3 45131868 45133401 -172903757 - MER83B-int LTR ERV1 -1029 3925 2960 562 194 68 0 chr3 45133401 45133536 -172903622 - AluSg/x SINE Alu 0 313 172 328 324 37 62 chr3 45133747 45134201 -172902957 - MER83B-int LTR ERV1 -2188 2766 2324 261 298 11 0 chr3 45134336 45134430 -172902728 - MER83B-int LTR ERV1 -2772 2182 2088 1572 313 45 8 chr3 45134649 45135419 -172901739 - MER83B-int LTR ERV1 -3059 1895 1097 2697 291 63 27 chr3 45135545 45136733 -172900425 - MER83B-int LTR ERV1 -3304 981 12 1938 154 34 47 chr3 45136733 45137116 -172900042 - MER83B LTR ERV1 0 378 1 2297 174 24 2 chr3 45137326 45137740 -172899418 + MSTC LTR MaLR 6 428 0 23 92 0 0 chr3 45138839 45138904 -172898254 + AT_rich Low_complexity Low_complexity 1 65 0 21 36 0 0 chr3 45139249 45139277 -172897881 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 45139331 45139359 -172897799 + AT_rich Low_complexity Low_complexity 1 28 0 251 358 67 17 chr3 45139398 45139518 -172897640 + MIR3 SINE MIR 81 206 -2 573 24 36 0 chr3 45139848 45139931 -172897227 + (TAGA)n Simple_repeat Simple_repeat 2 87 0 1453 158 42 115 chr3 45140080 45140650 -172896508 - L1M4 LINE L1 -5111 1744 1219 686 216 36 54 chr3 45140931 45141153 -172896005 - L1M4 LINE L1 -5710 1149 932 327 152 15 15 chr3 45141610 45141676 -172895482 + L1PB1 LINE L1 129 194 -6669 9875 153 30 27 chr3 45141676 45143409 -172893749 + L1PB1 LINE L1 995 2720 -4142 2096 137 3 10 chr3 45143409 45143715 -172893443 + AluSx SINE Alu 5 308 -4 9875 153 30 27 chr3 45143715 45146088 -172891070 + L1PB1 LINE L1 2720 5278 -1584 1754 118 115 13 chr3 45146088 45146399 -172890759 + L1PB1 LINE L1 6521 6865 -2 27 0 0 0 chr3 45146399 45146426 -172890732 + AT_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr3 45146762 45146798 -172890360 + AT_rich Low_complexity Low_complexity 1 36 0 231 169 12 48 chr3 45147755 45147838 -172889320 + (TA)n Simple_repeat Simple_repeat 2 81 0 352 75 19 0 chr3 45147847 45147900 -172889258 + MLT2B1 LTR ERVL 467 520 0 3748 166 53 42 chr3 45147900 45148408 -172888750 - L1MC3 LINE L1 -217 7848 7326 195 100 0 0 chr3 45148408 45148438 -172888720 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 3748 166 53 42 chr3 45148438 45148778 -172888380 - L1MC3 LINE L1 -739 7326 6991 3739 215 28 10 chr3 45148782 45150436 -172886722 - L1MC3 LINE L1 -744 5682 4805 286 211 0 0 chr3 45150437 45150489 -172886669 - L1MC3 LINE L1 -6355 71 20 1642 208 0 0 chr3 45150811 45151099 -172886059 - AluJo SINE Alu -24 288 1 1990 168 112 11 chr3 45151293 45151739 -172885419 - L1MD1 LINE L1 -14 6228 5738 1438 184 52 96 chr3 45151737 45151804 -172885354 - L1MDa LINE L1 -4639 1901 1833 * 6578 169 27 56 chr3 45151804 45153509 -172883649 + L1PA15 LINE L1 4077 5776 -389 2363 100 7 0 chr3 45153509 45153819 -172883339 + AluSx SINE Alu 1 312 0 6578 169 27 56 chr3 45153819 45154196 -172882962 + L1PA15 LINE L1 5776 6162 -3 1438 184 52 96 chr3 45154196 45154730 -172882428 - L1MDa LINE L1 -4707 1833 1327 1588 172 114 65 chr3 45154736 45155167 -172881991 + LTR47A LTR ERVL 1 452 0 344 304 54 20 chr3 45155182 45155330 -172881828 + LTR47A-int LTR ERVL 16 168 -5175 205 182 0 0 chr3 45155568 45155601 -172881557 + (TATATG)n Simple_repeat Simple_repeat 6 38 0 2068 238 29 59 chr3 45155671 45156318 -172880840 + LTR49-int LTR ERV1 1851 2478 -3853 10495 171 57 43 chr3 45156341 45158196 -172878962 + LTR49-int LTR ERV1 2657 4485 -1846 2473 41 7 0 chr3 45158196 45158491 -172878667 + AluY SINE Alu 2 298 -13 10495 171 57 43 chr3 45158491 45159051 -172878107 + LTR49-int LTR ERV1 4485 4759 -1572 4278 117 8 3 chr3 45159051 45159660 -172877498 - LTR9 LTR ERV1 0 612 1 10495 171 57 43 chr3 45159660 45160442 -172876716 + LTR49-int LTR ERV1 4759 5529 -802 2311 225 46 39 chr3 45160442 45160541 -172876617 + MER72 LTR ERV1 1 98 -624 2157 118 3 19 chr3 45160541 45160855 -172876303 + AluSx SINE Alu 1 309 -3 2311 225 46 39 chr3 45160855 45161453 -172875705 + MER72 LTR ERV1 98 703 -19 944 221 99 97 chr3 45161472 45161956 -172875202 + LTR49-int LTR ERV1 5591 6075 -683 1373 181 168 24 chr3 45161968 45162349 -172874809 + LTR47A LTR ERVL 16 451 -1 651 156 18 12 chr3 45162350 45162517 -172874641 - L1MDa LINE L1 -5214 1326 1159 1016 147 0 13 chr3 45162543 45162700 -172874458 - AluSp SINE Alu -25 288 134 1057 190 53 23 chr3 45162700 45162963 -172874195 - L1MDa LINE L1 -5362 1178 908 2282 217 76 39 chr3 45162963 45163584 -172873574 - L1MDa LINE L1 -5888 652 9 446 232 68 64 chr3 45163672 45163888 -172873270 - L1ME3A LINE L1 -92 6070 5856 284 243 14 0 chr3 45163894 45163968 -172873190 + L1M3 LINE L1 5366 5440 -724 567 235 13 19 chr3 45164034 45164206 -172872952 + L1M3 LINE L1 5669 5848 -332 2258 131 0 0 chr3 45164295 45164607 -172872551 + AluSx SINE Alu 1 312 0 2054 132 0 3 chr3 45165112 45165399 -172871759 - AluSx SINE Alu -26 286 1 21 0 0 0 chr3 45165725 45165746 -172871412 + AT_rich Low_complexity Low_complexity 1 21 0 334 328 52 29 chr3 45167212 45167386 -172869772 + MIR SINE MIR 17 194 -68 318 320 119 14 chr3 45167408 45167686 -172869472 + L1MC4a LINE L1 5728 6034 -1774 295 344 96 6 chr3 45167873 45168030 -172869128 + MIR3 SINE MIR 30 200 -8 429 261 163 7 chr3 45168034 45168187 -172868971 - L2 LINE L2 0 3313 3137 208 333 118 7 chr3 45168191 45168326 -172868832 - L2 LINE L2 -254 3018 2869 522 260 28 4 chr3 45168652 45168800 -172868358 - MIR SINE MIR -63 145 39 2314 82 0 3 chr3 45169335 45169650 -172867508 + AluSc SINE Alu 1 309 0 191 314 137 24 chr3 45169932 45170056 -172867102 + MIR SINE MIR 125 262 0 283 386 59 25 chr3 45171028 45171264 -172865894 - L2 LINE L2 -43 3229 2986 440 299 30 8 chr3 45171753 45171887 -172865271 + L2 LINE L2 3167 3303 -10 624 172 234 7 chr3 45172161 45172306 -172864852 - MER45A DNA AcHobo 0 178 1 646 299 69 10 chr3 45172630 45172834 -172864324 + MIR SINE MIR 24 239 -23 186 295 101 86 chr3 45172885 45173024 -172864134 + MIR3 SINE MIR 12 152 -56 25 0 0 0 chr3 45173320 45173345 -172863813 + GC_rich Low_complexity Low_complexity 1 25 0 680 160 0 0 chr3 45173961 45174086 -172863072 + L1PA11 LINE L1 6030 6154 -20 222 280 204 19 chr3 45176242 45176399 -172860759 + MIR SINE MIR 67 252 -10 231 284 40 28 chr3 45177370 45177546 -172859612 - L1ME4a LINE L1 0 6121 5944 663 184 18 99 chr3 45177697 45177969 -172859189 - L1MC5 LINE L1 -44 7917 7668 385 172 0 0 chr3 45178178 45178242 -172858916 - MIR SINE MIR -76 132 69 230 191 21 0 chr3 45179242 45179289 -172857869 - L2 LINE L2 -1 3312 3265 350 277 188 0 chr3 45179366 45179467 -172857691 + MER5B DNA MER1_type 12 131 -47 319 310 71 13 chr3 45179597 45179836 -172857322 - L1ME4a LINE L1 -314 5807 5555 2795 231 76 18 chr3 45179856 45181015 -172856143 - L1ME3A LINE L1 -5 6148 4928 877 264 44 22 chr3 45181020 45181338 -172855820 - L1ME3A LINE L1 -1273 4856 4532 361 313 63 71 chr3 45181339 45181607 -172855551 - L1ME3A LINE L1 -5488 631 366 4380 174 45 10 chr3 45181657 45182530 -172854628 - L1MB3 LINE L1 0 6183 5281 866 304 120 53 chr3 45182530 45183539 -172853619 - L1ME4a LINE L1 -633 5488 4395 1915 170 55 3 chr3 45183539 45183886 -172853272 - MLT1A1 LTR MaLR 0 365 1 866 304 120 53 chr3 45183886 45184000 -172853158 - L1ME4a LINE L1 -1726 4395 4290 390 284 108 36 chr3 45184036 45184258 -172852900 + MIR SINE MIR 1 238 -24 519 290 35 76 chr3 45184683 45185079 -172852079 - L1ME4a LINE L1 -2144 4002 3623 293 336 78 46 chr3 45185494 45185866 -172851292 + L2 LINE L2 1958 2341 -973 1820 293 141 33 chr3 45186386 45186692 -172850466 + L2 LINE L2 38 310 -3004 1737 183 41 0 chr3 45186692 45186863 -172850295 - AluJo SINE Alu -10 302 113 318 50 0 0 chr3 45186863 45186903 -172850255 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1737 183 41 0 chr3 45186903 45187021 -172850137 - AluJo SINE Alu -199 113 1 1820 293 141 33 chr3 45187021 45187734 -172849424 + L2 LINE L2 310 1167 -2147 692 315 54 84 chr3 45187748 45187862 -172849296 - L2 LINE L2 -129 3184 3068 1439 202 30 35 chr3 45187862 45188229 -172848929 + MLT1A1 LTR MaLR 1 365 0 692 315 54 84 chr3 45188229 45188501 -172848657 - L2 LINE L2 -245 3068 2789 1056 184 19 5 chr3 45188501 45188707 -172848451 - MER3 DNA MER1_type 0 209 1 692 315 54 84 chr3 45188707 45188969 -172848189 - L2 LINE L2 -524 2789 2559 1926 129 50 0 chr3 45188969 45189247 -172847911 + AluSx SINE Alu 1 292 -20 692 315 54 84 chr3 45189247 45189356 -172847802 - L2 LINE L2 -754 2559 2448 201 39 0 0 chr3 45189373 45189399 -172847759 + (TA)n Simple_repeat Simple_repeat 2 27 0 30 0 0 0 chr3 45190686 45190716 -172846442 + AT_rich Low_complexity Low_complexity 1 30 0 648 26 0 0 chr3 45192647 45192725 -172844433 + (GAAA)n Simple_repeat Simple_repeat 3 80 0 1088 92 0 27 chr3 45192725 45192769 -172844389 + (GGAA)n Simple_repeat Simple_repeat 1 222 0 1088 92 0 27 chr3 45192769 45192954 -172844204 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 609 272 142 42 chr3 45193229 45193637 -172843521 - LTR16A1 LTR ERVL -8 449 1 197 119 24 0 chr3 45194568 45194610 -172842548 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 298 284 11 11 chr3 45194739 45194834 -172842324 - MIR3 SINE MIR -31 177 83 872 222 23 6 chr3 45194934 45195110 -172842048 - MER5A DNA MER1_type -10 179 1 640 217 29 29 chr3 45196027 45196202 -172840956 - MER45A DNA AcHobo 0 178 4 304 291 95 74 chr3 45196286 45196434 -172840724 - MIR3 SINE MIR -28 180 30 189 0 0 0 chr3 45196435 45196456 -172840702 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 283 270 22 11 chr3 45196643 45196732 -172840426 + GA-rich Low_complexity Low_complexity 1 90 0 331 364 0 14 chr3 45196737 45196880 -172840278 - MIR SINE MIR -31 231 91 223 242 30 0 chr3 45197752 45197818 -172839340 + T-rich Low_complexity Low_complexity 3 70 0 26 30 0 0 chr3 45197823 45197856 -172839302 + AT_rich Low_complexity Low_complexity 1 33 0 381 251 44 44 chr3 45198409 45198660 -172838498 + L1ME4a LINE L1 4394 4644 -1502 605 273 12 0 chr3 45198682 45198843 -172838315 + MIR SINE MIR 94 256 -6 328 259 76 84 chr3 45198860 45199203 -172837955 + L1ME4a LINE L1 5669 6008 -113 22 0 0 0 chr3 45199228 45199250 -172837908 + AT_rich Low_complexity Low_complexity 1 22 0 481 115 26 0 chr3 45199285 45199363 -172837795 + MADE1 DNA Mariner 1 80 0 1727 156 7 17 chr3 45200078 45200367 -172836791 - AluJo SINE Alu -15 297 12 833 278 68 7 chr3 45200561 45200842 -172836316 - LTR16A LTR ERVL -26 424 127 1023 236 18 0 chr3 45200981 45201201 -172835957 + MER58A DNA MER1_type 1 224 0 560 298 58 11 chr3 45201295 45201483 -172835675 + MIR SINE MIR 47 243 -19 370 231 58 29 chr3 45201978 45202081 -172835077 - MLT1J2 LTR MaLR 0 450 345 1335 243 62 71 chr3 45202081 45202616 -172834542 - MLT1E LTR MaLR 0 593 64 785 261 112 30 chr3 45202750 45203202 -172833956 + MLT1L LTR MaLR 7 540 -75 235 287 23 11 chr3 45204701 45204788 -172832370 - MIR SINE MIR -5 257 170 1030 260 177 40 chr3 45205292 45205845 -172831313 + L2 LINE L2 2304 2932 -382 315 277 50 50 chr3 45206132 45206251 -172830907 + MIR SINE MIR 24 142 -66 435 309 59 77 chr3 45206355 45206760 -172830398 - MLT1J LTR MaLR 0 511 114 244 264 35 49 chr3 45207078 45207222 -172829936 - L1M4 LINE L1 -1315 4831 4690 20778 70 21 0 chr3 45207274 45210118 -172827040 - L1P LINE L1 -3239 2907 3 24 32 0 0 chr3 45210283 45210314 -172826844 + AT_rich Low_complexity Low_complexity 1 31 0 341 294 99 28 chr3 45210332 45210543 -172826615 - L1M4 LINE L1 -1386 4760 4535 1382 190 4 12 chr3 45210544 45210797 -172826361 + AluJo SINE Alu 1 251 -61 207 88 0 0 chr3 45211794 45211828 -172825330 + (CA)n Simple_repeat Simple_repeat 2 35 0 615 297 110 67 chr3 45211898 45213131 -172824027 - L1M4 LINE L1 -2322 3824 2477 2328 89 3 0 chr3 45213131 45213434 -172823724 + AluSp SINE Alu 1 304 -9 615 297 110 67 chr3 45213434 45213602 -172823556 - L1M4 LINE L1 -3669 2477 2318 1088 222 55 18 chr3 45213729 45214273 -172822885 - LTR48B LTR ERV1 0 644 1 357 236 89 16 chr3 45214518 45214641 -172822517 + MIR SINE MIR 124 255 -7 2256 133 0 3 chr3 45214757 45215096 -172822062 + MER1B DNA MER1_type 1 338 -1 29 28 0 0 chr3 45216627 45216663 -172820495 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr3 45216812 45216849 -172820309 + AT_rich Low_complexity Low_complexity 1 37 0 238 214 18 0 chr3 45217209 45217265 -172819893 + L1ME LINE L1 5670 5726 -395 432 323 42 65 chr3 45217265 45217723 -172819435 - MLT1J2 LTR MaLR 0 450 4 199 244 150 31 chr3 45218368 45218495 -172818663 + L2 LINE L2 3167 3308 -5 2664 202 45 93 chr3 45218744 45219642 -172817516 + L1MC4 LINE L1 6588 7441 -601 186 221 105 74 chr3 45221040 45221135 -172816023 + L2 LINE L2 3199 3296 -17 581 231 6 46 chr3 45221273 45221446 -172815712 - L2 LINE L2 0 3313 3148 1295 222 30 132 chr3 45221449 45222162 -172814996 + L1MC4 LINE L1 7403 8042 0 1114 250 88 43 chr3 45222224 45222864 -172814294 - L2 LINE L2 -257 3056 2378 271 340 94 70 chr3 45223785 45224114 -172813044 - L2 LINE L2 0 3272 2936 2380 149 57 3 chr3 45224282 45224652 -172812506 - MLT1B LTR MaLR 0 390 1 323 302 111 60 chr3 45224892 45225144 -172812014 - L1M2a LINE L1 -5899 1269 1005 698 288 24 18 chr3 45225785 45226005 -172811153 - MIR SINE MIR -33 229 13 2295 104 0 3 chr3 45226061 45226359 -172810799 + AluSx SINE Alu 1 297 -15 651 265 22 16 chr3 45226422 45226607 -172810551 + MIR SINE MIR 70 255 -7 360 305 42 0 chr3 45227340 45227458 -172809700 - MIR3 SINE MIR -21 187 65 391 252 143 8 chr3 45228639 45228758 -172808400 + MIR SINE MIR 18 152 -110 * 2644 273 224 29 chr3 45228756 45230399 -172806759 + L2 LINE L2 1233 3195 -118 8049 26 2 6 chr3 45230403 45231434 -172805724 + L1PA3 LINE L1 5128 6155 0 25 0 0 0 chr3 45231446 45231471 -172805687 + AT_rich Low_complexity Low_complexity 1 25 0 217 209 0 23 chr3 45231524 45231567 -172805591 + MIR SINE MIR 26 67 -195 260 298 105 42 chr3 45231763 45231954 -172805204 + L1M4 LINE L1 3622 3824 -2322 3026 251 84 71 chr3 45232140 45233601 -172803557 + L2 LINE L2 1847 3309 -4 231 338 31 25 chr3 45233833 45233993 -172803165 + HAL1b LINE L1 1187 1347 -1 718 152 13 32 chr3 45234040 45234198 -172802960 - L1 LINE L1 -1464 4682 4528 939 128 53 58 chr3 45234246 45234434 -172802724 - MER20 DNA MER1_type -3 216 30 567 130 57 130 chr3 45234436 45234628 -172802530 - MER53 DNA DNA 0 189 12 247 360 0 0 chr3 45234748 45234834 -172802324 - MIR SINE MIR -157 105 20 383 266 81 8 chr3 45234971 45235095 -172802063 - MIR SINE MIR -93 169 37 255 319 0 69 chr3 45235541 45235657 -172801501 + L2 LINE L2 2992 3099 -173 587 237 151 7 chr3 45235947 45236099 -172801059 + MER5A DNA MER1_type 9 182 -7 473 291 46 13 chr3 45236286 45236437 -172800721 - MIR3 SINE MIR -48 160 5 282 264 91 33 chr3 45237546 45237667 -172799491 - MIR SINE MIR -50 212 85 214 318 45 11 chr3 45238498 45238586 -172798572 - MIR SINE MIR -63 199 109 210 143 0 0 chr3 45238863 45238898 -172798260 + (TG)n Simple_repeat Simple_repeat 1 35 0 252 0 0 0 chr3 45239159 45239187 -172797971 + (CA)n Simple_repeat Simple_repeat 2 29 0 4062 113 143 140 chr3 45240396 45241785 -172795373 - pTR5 LTR ERV1 0 2438 79 196 349 0 0 chr3 45242204 45242270 -172794888 + L2 LINE L2 3205 3270 -2 251 280 32 80 chr3 45242385 45242510 -172794648 - L2 LINE L2 0 3313 3195 1095 130 0 0 chr3 45243165 45243334 -172793824 + L1MA4 LINE L1 6131 6299 -1 2036 115 4 4 chr3 45244123 45244401 -172792757 + AluSx SINE Alu 1 278 -34 251 194 81 32 chr3 45245704 45245766 -172791392 + MER103 DNA DNA 82 146 -20 1095 158 0 12 chr3 45245819 45245983 -172791175 - FRAM SINE Alu -21 155 1 570 229 9 0 chr3 45246043 45246148 -172791010 - FLAM_A SINE Alu -32 110 5 437 285 145 0 chr3 45246173 45246359 -172790799 - L3 LINE CR1 -191 1386 1174 2213 104 3 0 chr3 45246428 45246791 -172790367 + AluSx SINE Alu 1 364 0 181 250 154 0 chr3 45246965 45247017 -172790141 + L3 LINE CR1 1081 1140 -437 338 0 24 0 chr3 45247263 45247305 -172789853 + (TG)n Simple_repeat Simple_repeat 2 44 0 1067 205 135 46 chr3 45247624 45247994 -172789164 + LTR16A1 LTR ERVL 55 457 0 214 364 0 11 chr3 45249416 45249504 -172787654 + CT-rich Low_complexity Low_complexity 5 91 0 297 188 31 0 chr3 45249935 45249999 -172787159 + AluSp/q SINE Alu 236 301 -2 320 261 36 27 chr3 45250285 45250396 -172786762 - MIR SINE MIR -39 223 112 1704 191 29 29 chr3 45251825 45252202 -172784956 - MER74C LTR ERVL -83 377 1 2330 102 0 0 chr3 45252212 45252516 -172784642 + AluSg SINE Alu 1 304 -6 416 250 86 0 chr3 45252556 45252672 -172784486 + MER117 DNA MER1_type 16 141 -56 312 257 104 49 chr3 45252973 45253117 -172784041 + L2 LINE L2 3159 3310 -3 1101 246 54 54 chr3 45254112 45254462 -172782696 + MLT1H LTR MaLR 1 350 -199 293 264 57 36 chr3 45255422 45255615 -172781543 + HAL1 LINE L1 1114 1310 -1197 198 103 0 0 chr3 45255735 45255764 -172781394 + (CA)n Simple_repeat Simple_repeat 2 30 0 2199 112 0 0 chr3 45256089 45256383 -172780775 + AluSc SINE Alu 1 294 -15 361 277 0 0 chr3 45256936 45257030 -172780128 - MARNA DNA Mariner -44 542 449 2053 89 0 0 chr3 45257890 45258147 -172779011 + AluSc SINE Alu 1 257 -52 553 294 32 18 chr3 45258408 45258626 -172778532 + MARNA DNA Mariner 143 363 -223 2451 89 0 6 chr3 45258634 45258949 -172778209 - AluSp SINE Alu 0 313 1 355 266 63 35 chr3 45260996 45261139 -172776019 - MIR SINE MIR -110 152 6 234 0 0 0 chr3 45261528 45261554 -172775604 + (T)n Simple_repeat Simple_repeat 1 26 0 870 78 0 26 chr3 45261911 45262026 -172775132 - L1PA15 LINE L1 -15 6150 6039 345 284 158 0 chr3 45262225 45262352 -172774806 + MIR SINE MIR 81 227 -35 6943 107 17 18 chr3 45262554 45263661 -172773497 - L1MA5A LINE L1 0 6297 5189 256 57 0 0 chr3 45263838 45263873 -172773285 - L1MA5A LINE L1 -963 5183 5149 567 0 0 0 chr3 45264339 45264402 -172772756 + (CA)n Simple_repeat Simple_repeat 2 64 0 640 322 57 4 chr3 45265343 45265570 -172771588 - LTR16A LTR ERVL -40 410 172 556 240 10 78 chr3 45266128 45266332 -172770826 - MLT1H LTR MaLR -329 220 31 1357 247 131 14 chr3 45267258 45267740 -172769418 + MLT1H LTR MaLR 12 549 0 273 218 0 0 chr3 45267771 45267826 -172769332 + MLT1I LTR MaLR 54 108 -301 236 234 0 31 chr3 45268066 45268130 -172769028 + MLT1I LTR MaLR 348 409 0 375 265 110 55 chr3 45268701 45268901 -172768257 - MIR SINE MIR -39 223 13 1952 86 31 0 chr3 45269772 45270027 -172767131 + AluSp SINE Alu 1 263 -50 315 0 0 0 chr3 45270036 45270071 -172767087 + (TAA)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr3 45270193 45270217 -172766941 + AT_rich Low_complexity Low_complexity 1 24 0 427 16 16 31 chr3 45270218 45270282 -172766876 - L1PA3 LINE L1 -6 6149 6087 2768 77 29 0 chr3 45270483 45270859 -172766299 - L1PA10 LINE L1 -6 6162 5776 415 239 103 42 chr3 45270859 45271239 -172765919 - L1MCa LINE L1 -3445 2684 2282 415 235 79 70 chr3 45271324 45271612 -172765546 - L1MCa LINE L1 -3862 2267 1945 323 291 99 26 chr3 45271833 45272176 -172764982 - L1MCa LINE L1 -4580 1730 1363 587 295 57 56 chr3 45272295 45272331 -172764827 - L1MCa LINE L1 -4931 1188 1154 1862 177 3 7 chr3 45272331 45272636 -172764522 - AluJb SINE Alu -6 306 3 587 295 57 56 chr3 45272636 45273226 -172763932 - L1MCa LINE L1 -4965 1154 561 332 188 0 12 chr3 45273316 45273396 -172763762 + CT-rich Low_complexity Low_complexity 2 80 0 248 314 0 57 chr3 45273660 45273835 -172763323 - L1MCa LINE L1 -5949 170 6 192 200 50 0 chr3 45275053 45275093 -172762065 + MIR SINE MIR 107 148 -114 220 171 29 114 chr3 45275108 45275178 -172761980 + L3 LINE CR1 1507 1570 -7 358 260 52 10 chr3 45275194 45275290 -172761868 - MER5A DNA MER1_type -77 112 13 1011 271 44 39 chr3 45275500 45275884 -172761274 - L2 LINE L2 -729 2585 2200 430 308 23 0 chr3 45275873 45276006 -172761152 - MIR SINE MIR -56 206 71 * 2706 23 0 7 chr3 45276931 45277241 -172759917 - AluY SINE Alu -3 308 1 24 32 0 0 chr3 45277325 45277356 -172759802 + AT_rich Low_complexity Low_complexity 1 31 0 195 42 0 0 chr3 45277610 45277634 -172759524 + (TA)n Simple_repeat Simple_repeat 1 24 0 222 195 0 0 chr3 45278495 45278536 -172758622 + (CAA)n Simple_repeat Simple_repeat 3 43 0 700 267 106 17 chr3 45278544 45278780 -172758378 - MIR SINE MIR -3 259 3 390 244 104 0 chr3 45278829 45278944 -172758214 - MER63 DNA MER1_type -81 755 3 324 0 0 0 chr3 45279043 45279079 -172758079 + (TA)n Simple_repeat Simple_repeat 2 37 0 1569 183 37 0 chr3 45279079 45279379 -172757779 - AluSx SINE Alu -1 311 1 24 0 0 0 chr3 45279387 45279411 -172757747 + AT_rich Low_complexity Low_complexity 1 24 0 908 194 21 31 chr3 45281049 45281240 -172755918 - MER5A DNA MER1_type 0 189 1 217 289 26 40 chr3 45281359 45281435 -172755723 - MER5B DNA MER1_type -103 75 1 271 360 39 26 chr3 45281811 45281964 -172755194 - L2 LINE L2 -6 3266 3112 181 335 159 28 chr3 45282193 45282375 -172754783 - L2 LINE L2 -527 2787 2582 227 267 108 51 chr3 45282509 45282704 -172754454 - L2 LINE L2 -1056 2258 2053 726 203 0 0 chr3 45282879 45283002 -172754156 + FLAM_A SINE Alu 1 123 -10 204 238 48 0 chr3 45283043 45283085 -172754073 - L2 LINE L2 -19 3294 3251 233 288 24 24 chr3 45283790 45283915 -172753243 + (CCTA)n Simple_repeat Simple_repeat 4 128 0 315 300 27 18 chr3 45285685 45285795 -172751363 - MIR3 SINE MIR -94 114 4 494 276 103 61 chr3 45286949 45287157 -172750001 - L3 LINE CR1 -242 1335 1108 1735 173 14 0 chr3 45287157 45287440 -172749718 - AluJo SINE Alu -25 287 1 494 276 103 61 chr3 45287440 45287542 -172749616 - L3 LINE CR1 -469 1108 1012 359 256 23 0 chr3 45287648 45287734 -172749424 + MER81 DNA DNA 1 88 -26 348 182 61 0 chr3 45287728 45287794 -172749364 + MER81 DNA DNA 44 113 -1 * 568 325 98 27 chr3 45289629 45290272 -172746886 + L2 LINE L2 2587 3270 -43 265 286 48 29 chr3 45290363 45290468 -172746690 - MIR3 SINE MIR -13 195 89 22 35 0 0 chr3 45291009 45291038 -172746120 + AT_rich Low_complexity Low_complexity 1 29 0 259 245 19 88 chr3 45291601 45291760 -172745398 + HAL1 LINE L1 50 197 -2310 886 244 9 55 chr3 45291770 45292098 -172745060 + HAL1 LINE L1 1498 1810 -697 722 180 0 43 chr3 45292182 45292321 -172744837 + AluSq/x SINE Alu 1 133 -180 1919 141 25 0 chr3 45292323 45292625 -172744533 + AluSx SINE Alu 1 309 0 386 320 104 4 chr3 45292632 45292882 -172744276 + HAL1 LINE L1 1936 2210 -297 418 296 187 0 chr3 45292949 45293179 -172743979 + HAL1 LINE L1 2230 2502 -5 22 35 0 0 chr3 45293619 45293648 -172743510 + AT_rich Low_complexity Low_complexity 1 29 0 232 217 29 0 chr3 45293818 45293887 -172743271 + HAL1 LINE L1 2058 2128 -379 203 273 0 0 chr3 45296070 45296114 -172741044 + (CA)n Simple_repeat Simple_repeat 2 45 0 191 350 10 68 chr3 45296501 45296604 -172740554 - MIR3 SINE MIR -111 97 1 209 265 29 0 chr3 45297375 45297443 -172739715 + (TA)n Simple_repeat Simple_repeat 1 70 0 232 319 155 17 chr3 45297459 45297575 -172739583 + MIR3 SINE MIR 10 141 -67 2758 74 6 0 chr3 45297799 45298150 -172739008 + THE1A LTR MaLR 3 355 0 11598 86 11 9 chr3 45298150 45299727 -172737431 + THE1A-int LTR MaLR 1 1580 0 2757 76 3 0 chr3 45299727 45300081 -172737077 + THE1A LTR MaLR 1 355 0 969 168 21 0 chr3 45300338 45300528 -172736630 + L1PB1 LINE L1 2 195 -6668 11900 186 28 55 chr3 45300533 45302329 -172734829 + L1PB1 LINE L1 1111 2954 -3913 264 30 0 0 chr3 45302329 45302362 -172734796 + (CA)n Simple_repeat Simple_repeat 2 34 0 11900 186 28 55 chr3 45302362 45305098 -172732060 + L1PB1 LINE L1 2954 5703 -1164 2924 85 44 21 chr3 45305098 45305532 -172731626 + MLT2A1 LTR ERVL 1 444 0 11900 186 28 55 chr3 45305532 45306667 -172730491 + L1PB1 LINE L1 5703 6867 0 6081 31 3 5 chr3 45306693 45307464 -172729694 + L1PA4 LINE L1 5254 6022 -133 518 115 0 23 chr3 45307590 45307677 -172729481 + AluJ/FRAM SINE Alu 221 305 -7 481 286 76 50 chr3 45307678 45308611 -172728547 + L1 LINE L1 2888 3878 -2268 2193 131 3 10 chr3 45309982 45310296 -172726862 - AluSx SINE Alu 0 312 1 508 189 11 108 chr3 45311072 45311257 -172725901 - MER112 DNA MER1_type -20 240 74 397 268 80 0 chr3 45311619 45311731 -172725427 + MIR SINE MIR 124 244 -18 196 419 0 0 chr3 45311757 45311831 -172725327 - MIR SINE MIR -169 93 20 222 284 0 25 chr3 45312226 45312307 -172724851 + CT-rich Low_complexity Low_complexity 1 79 0 805 217 57 0 chr3 45312501 45312676 -172724482 - MER5A DNA MER1_type -2 187 3 22439 100 12 2 chr3 45312787 45316250 -172720908 - L1PA7 LINE L1 -1284 4862 1365 6964 55 10 3 chr3 45316250 45317525 -172719633 + L1PA7 LINE L1 4868 6148 -6 26 0 0 0 chr3 45317525 45317551 -172719607 + AT_rich Low_complexity Low_complexity 1 26 0 325 295 84 32 chr3 45317726 45317916 -172719242 + MIR SINE MIR 48 247 -15 190 286 36 48 chr3 45320004 45320088 -172717070 + L2 LINE L2 2590 2672 -642 230 281 161 25 chr3 45320140 45320339 -172716819 + MIR SINE MIR 31 256 -6 241 465 0 0 chr3 45320427 45320498 -172716660 + A-rich Low_complexity Low_complexity 1 71 0 352 256 14 87 chr3 45320949 45321089 -172716069 + MIR SINE MIR 34 163 -63 325 282 55 0 chr3 45321113 45321223 -172715935 + L2 LINE L2 2729 2844 -470 285 29 0 0 chr3 45321232 45321266 -172715892 + (T)n Simple_repeat Simple_repeat 1 34 0 388 311 106 35 chr3 45321413 45321696 -172715462 + L2 LINE L2 3011 3313 0 2103 105 0 11 chr3 45321783 45322098 -172715060 + AluSx SINE Alu 1 312 0 1458 170 82 162 chr3 45322345 45323006 -172714152 - MER4A LTR ERV1 0 664 64 2310 105 7 0 chr3 45323006 45323312 -172713846 - AluSq SINE Alu -5 308 1 1458 170 82 162 chr3 45323312 45323372 -172713786 - MER4A LTR ERV1 -600 64 1 380 319 31 31 chr3 45323669 45323829 -172713329 + MIR3 SINE MIR 4 163 -45 1639 176 4 18 chr3 45324398 45324677 -172712481 + AluJo SINE Alu 1 275 -37 207 0 0 0 chr3 45324677 45324700 -172712458 + (TCTA)n Simple_repeat Simple_repeat 1 23 0 369 206 0 0 chr3 45324876 45324978 -172712180 + (CA)n Simple_repeat Simple_repeat 1 102 0 234 238 32 16 chr3 45326103 45326166 -172710992 + L3b LINE CR1 1283 1346 -237 237 220 77 66 chr3 45326418 45326509 -172710649 - MIR3 SINE MIR -111 97 6 1353 231 26 21 chr3 45326707 45327084 -172710074 - LTR37A LTR ERV1 -1 425 47 186 250 19 19 chr3 45327200 45327252 -172709906 - MIR SINE MIR -121 141 90 261 262 135 43 chr3 45327253 45327394 -172709764 + MER5A DNA MER1_type 36 189 0 * 269 296 37 25 chr3 45327394 45327474 -172709684 - MIR SINE MIR -105 103 23 1054 185 39 10 chr3 45328845 45329050 -172708108 + AluJo SINE Alu 1 211 -101 896 100 8 0 chr3 45379054 45379184 -172657974 + LTR12 LTR ERV1 362 492 -222 * 2986 146 12 40 chr3 45379177 45379860 -172657298 - pTR5 LTR ERV1 -1038 1400 737 477 204 0 0 chr3 45380239 45380332 -172656826 - L1MB5 LINE L1 -8 6166 6074 3306 133 40 0 chr3 45380358 45380877 -172656281 - L1MA2 LINE L1 0 6304 5765 1921 141 3 3 chr3 45381220 45381510 -172655648 + AluSx SINE Alu 1 290 -22 209 116 0 47 chr3 45385348 45385391 -172651767 + (TTTC)n Simple_repeat Simple_repeat 2 42 0 625 221 15 0 chr3 45385403 45385534 -172651624 - AluJb SINE Alu -1 311 179 214 158 0 0 chr3 45385805 45385843 -172651315 + CT-rich Low_complexity Low_complexity 1 38 0 293 214 36 24 chr3 45388431 45388515 -172648643 - L1MC4 LINE L1 -3 8039 7955 22529 43 6 9 chr3 45388551 45391983 -172645175 + L1HS LINE L1 2621 6034 -121 209 203 40 54 chr3 45392145 45392219 -172644939 - MIR SINE MIR -59 203 131 683 197 41 70 chr3 45394412 45394551 -172642607 + MLT1H1 LTR MaLR 1 126 -429 1915 169 83 56 chr3 45394551 45394996 -172642162 - MSTB2 LTR MaLR 0 457 1 683 197 41 70 chr3 45394996 45395138 -172642020 + MLT1H1 LTR MaLR 126 271 -284 710 232 14 0 chr3 45395168 45395310 -172641848 + MLT1G1 LTR MaLR 452 595 0 472 192 10 20 chr3 45396478 45396577 -172640581 + MER103 DNA DNA 23 120 -46 236 306 0 27 chr3 45397731 45397842 -172639316 - L1 LINE L1 -3343 2803 2696 2213 117 17 0 chr3 45397913 45398213 -172638945 - AluSx SINE Alu -7 305 1 528 276 25 25 chr3 45398792 45398955 -172638203 - MIR SINE MIR -49 213 51 1214 187 60 26 chr3 45399977 45400321 -172636837 + MSTD LTR MaLR 1 396 0 1033 182 0 0 chr3 45401533 45401698 -172635460 + FRAM SINE Alu 1 165 -11 622 179 26 0 chr3 45402065 45402182 -172634976 + MLT1H1 LTR MaLR 386 505 0 243 188 0 0 chr3 45402525 45402573 -172634585 + (CA)n Simple_repeat Simple_repeat 2 49 0 279 288 0 0 chr3 45403519 45403592 -172633566 + L2 LINE L2 2684 2756 -558 390 242 176 7 chr3 45405689 45405838 -172631320 + MIR SINE MIR 61 233 -29 28 29 0 0 chr3 45405924 45405959 -172631199 + AT_rich Low_complexity Low_complexity 1 35 0 183 366 24 0 chr3 45406300 45406382 -172630776 - MIR SINE MIR -77 185 102 650 294 20 10 chr3 45406959 45407160 -172629998 + MLT2F LTR ERVL 9 211 -452 592 274 146 49 chr3 45407187 45407537 -172629621 + MLT2F LTR ERVL 280 663 0 721 286 53 0 chr3 45407537 45407708 -172629450 - MIR SINE MIR -60 202 23 264 226 0 0 chr3 45407954 45408016 -172629142 + (CA)n Simple_repeat Simple_repeat 1 62 0 345 238 177 29 chr3 45409653 45409805 -172627353 + MLT1J1 LTR MaLR 57 221 -188 839 181 26 0 chr3 45410044 45410199 -172626959 - L1MD2 LINE L1 -1 6358 6200 4390 251 60 22 chr3 45410199 45410841 -172626317 - L1MD1 LINE L1 -162 6474 5858 426 133 0 0 chr3 45410841 45410916 -172626242 - L1MA4A LINE L1 -8 6295 6221 4390 251 60 22 chr3 45410916 45412638 -172624520 - L1MD1 LINE L1 -778 5858 4027 1560 178 48 17 chr3 45412642 45412934 -172624224 - AluJo SINE Alu -6 306 6 258 296 31 0 chr3 45413058 45413156 -172624002 + L1M4 LINE L1 3268 3368 -2778 327 269 0 0 chr3 45413172 45413265 -172623893 + L1M4 LINE L1 3334 3426 -2720 393 230 0 0 chr3 45413268 45413355 -172623803 + L1M4 LINE L1 3566 3652 -2494 289 203 0 0 chr3 45413433 45413497 -172623661 - L1MD1 LINE L1 -2887 3653 3590 7147 68 25 0 chr3 45413499 45414706 -172622452 - L1PA7 LINE L1 0 6154 4956 4697 72 15 0 chr3 45414706 45415321 -172621837 + L1P LINE L1 1521 2144 -4002 3810 115 0 0 chr3 45415323 45415871 -172621287 + L1P LINE L1 2230 2777 -3369 2970 247 35 27 chr3 45415867 45416006 -172621152 - L1MD1 LINE L1 -2959 3581 3445 * 2147 123 0 7 chr3 45416006 45416306 -172620852 - AluSc SINE Alu -7 302 5 2970 247 35 27 chr3 45416306 45417143 -172620015 - L1MD1 LINE L1 -3095 3445 2597 * 3156 256 75 28 chr3 45417132 45418279 -172618879 - L1MD1 LINE L1 -5243 1297 17 1793 224 19 17 chr3 45418400 45418761 -172618397 - MLT1A1 LTR MaLR 0 365 4 7412 200 17 51 chr3 45418762 45419340 -172617818 - MLT1A1-int LTR MaLR -21 1714 1117 2595 124 22 0 chr3 45419340 45419696 -172617462 - THE1B LTR MaLR 0 364 1 7412 200 17 51 chr3 45419696 45420964 -172616194 - MLT1A1-int LTR MaLR -618 1117 1 1876 198 20 3 chr3 45420964 45421322 -172615836 - MLT1A1 LTR MaLR 0 365 2 281 313 15 53 chr3 45421787 45421844 -172615314 + MIR SINE MIR 135 193 -69 1366 174 23 103 chr3 45421844 45422240 -172614918 + MLT1A1 LTR MaLR 2 365 0 281 313 15 53 chr3 45422240 45422313 -172614845 + MIR SINE MIR 193 260 -2 535 264 101 0 chr3 45424073 45424221 -172612937 + Tigger5 DNA MER2_type 1 163 -2160 790 153 6 80 chr3 45424250 45424365 -172612793 + Tigger5 DNA MER2_type 2173 2274 -49 6627 116 26 25 chr3 45424365 45425435 -172611723 - MER11C LTR ERVK 0 1071 1 790 153 6 80 chr3 45425435 45425482 -172611676 + Tigger5 DNA MER2_type 2274 2323 0 509 185 8 0 chr3 45426627 45426746 -172610412 + (TA)n Simple_repeat Simple_repeat 2 121 0 784 316 100 34 chr3 45427022 45427490 -172609668 + L2 LINE L2 325 823 -2491 18609 183 24 72 chr3 45427801 45430935 -172606223 + L1MA2 LINE L1 16 3297 -4426 964 156 0 0 chr3 45430935 45431076 -172606082 + AluJb SINE Alu 1 141 -171 18609 183 24 72 chr3 45431076 45431419 -172605739 + L1MA2 LINE L1 3297 3655 -4068 2004 85 89 3 chr3 45431419 45431701 -172605457 + AluSq SINE Alu 1 306 -7 18609 183 24 72 chr3 45431701 45436190 -172600968 + L1MA2 LINE L1 3655 7723 0 2874 144 30 10 chr3 45436208 45436709 -172600449 - Tigger3b DNA MER2_type -681 550 40 207 69 0 0 chr3 45436710 45436739 -172600419 + (GA)n Simple_repeat Simple_repeat 2 30 0 304 298 81 16 chr3 45436893 45437017 -172600141 - MIR SINE MIR -55 207 76 183 339 0 32 chr3 45437085 45437147 -172600011 + L2 LINE L2 3232 3291 -22 1218 143 221 3 chr3 45438241 45438548 -172598610 - MLT1A2 LTR MaLR 0 374 1 333 239 35 35 chr3 45438554 45438667 -172598491 - MER117 DNA MER1_type -84 113 1 742 289 168 10 chr3 45439943 45440337 -172596821 - LTR16A1 LTR ERVL 0 457 2 262 214 114 53 chr3 45440946 45441077 -172596081 + MIR SINE MIR 121 259 -3 573 262 148 0 chr3 45442740 45442923 -172594235 + MIR SINE MIR 48 257 -5 326 219 49 122 chr3 45443387 45443551 -172593607 + MLT1I LTR MaLR 232 383 -26 514 278 17 23 chr3 45444974 45445150 -172592008 - MIR SINE MIR 0 262 88 23 33 0 0 chr3 45445410 45445440 -172591718 + AT_rich Low_complexity Low_complexity 1 30 0 441 128 256 15 chr3 45445716 45445849 -172591309 - MER103 DNA DNA -1 165 1 236 196 65 14 chr3 45445976 45446114 -172591044 + (TA)n Simple_repeat Simple_repeat 1 145 0 186 167 0 0 chr3 45446126 45446162 -172590996 + (CATATA)n Simple_repeat Simple_repeat 1 36 0 319 315 0 0 chr3 45446165 45446254 -172590904 - L1MC4 LINE L1 -1339 6703 6615 305 333 0 0 chr3 45446183 45446273 -172590885 + L1MC4 LINE L1 6614 6703 -1339 * 560 245 118 18 chr3 45446398 45446750 -172590408 + LTR52 LTR ERVL 1 421 0 203 111 111 0 chr3 45446781 45446817 -172590341 + MIR SINE MIR 220 259 -3 246 284 30 67 chr3 45447548 45447682 -172589476 + LTR16A1 LTR ERVL 1 129 -328 400 294 7 28 chr3 45448073 45448216 -172588942 + LTR67 LTR ERVL 6 145 -412 548 320 128 6 chr3 45448898 45449217 -172587941 + L2 LINE L2 2007 2364 -950 23 33 0 0 chr3 45449332 45449362 -172587796 + AT_rich Low_complexity Low_complexity 1 30 0 6111 139 29 4 chr3 45449942 45451348 -172585810 + L1MA3 LINE L1 4858 6299 -6 232 286 25 17 chr3 45451379 45451498 -172585660 + L1M4 LINE L1 2161 2280 -3866 201 268 0 18 chr3 45452266 45452322 -172584836 + (TATATG)n Simple_repeat Simple_repeat 3 57 0 191 170 21 0 chr3 45452338 45452385 -172584773 + (TA)n Simple_repeat Simple_repeat 2 49 0 284 302 160 12 chr3 45452854 45453023 -172584135 - MIR SINE MIR -64 198 5 323 239 0 15 chr3 45454099 45454166 -172582992 + MIR SINE MIR 41 106 -102 1760 249 64 40 chr3 45455431 45456101 -172581057 - L1ME3A LINE L1 -7 6163 5478 26 0 0 0 chr3 45456323 45456349 -172580809 + AT_rich Low_complexity Low_complexity 1 26 0 21 82 0 0 chr3 45456682 45456731 -172580427 + AT_rich Low_complexity Low_complexity 1 49 0 313 324 77 0 chr3 45456806 45457013 -172580145 + L1M4 LINE L1 3729 3951 -2195 490 349 64 32 chr3 45457028 45457595 -172579563 + L1M4 LINE L1 3946 4543 -1603 317 172 0 106 chr3 45457733 45457931 -172579227 + G-rich Low_complexity Low_complexity 1 177 0 240 130 0 0 chr3 45457952 45457998 -172579160 + (G)n Simple_repeat Simple_repeat 1 46 0 303 122 0 0 chr3 45458053 45458102 -172579056 + L1PA3 LINE L1 6104 6152 -3 349 288 41 34 chr3 45458368 45458514 -172578644 - MIR3 SINE MIR -18 190 44 480 251 35 41 chr3 45459494 45459665 -172577493 + MER5B DNA MER1_type 2 171 -7 3980 199 11 55 chr3 45461278 45461415 -172575743 + L1 LINE L1 3960 4101 -2045 2613 36 0 0 chr3 45461415 45461721 -172575437 + L1PA3 LINE L1 5845 6152 -3 3980 199 11 55 chr3 45461721 45462661 -172574497 + L1 LINE L1 4101 4990 -1156 4566 29 2 0 chr3 45462664 45463223 -172573935 + L1PA4 LINE L1 5460 6019 -136 315 274 143 57 chr3 45464727 45464902 -172572256 - MIR SINE MIR -70 192 3 317 336 26 4 chr3 45465857 45466083 -172571075 - MER46C DNA MER2_type -8 330 100 1593 83 0 0 chr3 45467529 45467745 -172569413 - L1PA5 LINE L1 0 6154 5939 2235 87 169 203 chr3 45467847 45468662 -172568496 + pTR5 LTR ERV1 1651 2438 0 195 343 10 20 chr3 45468900 45468999 -172568159 - MIR SINE MIR -116 146 49 418 292 31 12 chr3 45469283 45469444 -172567714 - MIR SINE MIR -3 259 96 226 322 98 44 chr3 45469573 45469756 -172567402 + L2 LINE L2 3075 3267 -5 1844 51 0 0 chr3 45470156 45470373 -172566785 + AluY SINE Alu 95 311 0 2293 109 3 0 chr3 45471987 45472291 -172564867 - AluSp SINE Alu -6 307 3 199 271 100 71 chr3 45473191 45473361 -172563797 - MER5A DNA MER1_type -1 188 14 328 289 107 7 chr3 45473398 45473547 -172563611 - MIR SINE MIR -57 205 42 183 42 0 0 chr3 45473638 45473662 -172563496 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 3949 195 23 18 chr3 45473813 45474939 -172562219 - L1MB7 LINE L1 -17 6167 5036 869 96 0 15 chr3 45475548 45475683 -172561475 - FLAM_C SINE Alu 0 133 1 289 298 58 16 chr3 45475759 45475880 -172561278 - MIR SINE MIR -105 157 32 1398 261 60 57 chr3 45476172 45476379 -172560779 - L1ME3 LINE L1 -1 6161 5956 2334 167 34 0 chr3 45476379 45476793 -172560365 - MSTB1 LTR MaLR -4 428 1 1398 261 60 57 chr3 45476793 45477324 -172559834 - L1ME3 LINE L1 -206 5956 5421 292 200 13 0 chr3 45477348 45477423 -172559735 - L1MB7 LINE L1 -1082 5064 4989 2626 196 33 40 chr3 45477446 45478138 -172559020 - L1MA9 LINE L1 -38 6274 5588 687 134 0 0 chr3 45478139 45478236 -172558922 - AluJ/FLAM SINE Alu -215 97 1 2493 234 48 24 chr3 45478255 45479062 -172558096 - L1MB7 LINE L1 -1178 4968 4142 1277 121 6 0 chr3 45479281 45479463 -172557695 + AluSg/x SINE Alu 120 302 -8 235 159 0 0 chr3 45479552 45479596 -172557562 + L1MC3 LINE L1 7721 7764 -21 193 359 48 29 chr3 45479608 45479711 -172557447 + MIR SINE MIR 40 144 -64 355 245 96 0 chr3 45479835 45479929 -172557229 + MER5A DNA MER1_type 10 112 -77 195 98 24 98 chr3 45479911 45479952 -172557206 - MER5A DNA MER1_type -108 81 44 * 3648 133 46 59 chr3 45480258 45480787 -172556371 - LTR8 LTR ERV1 0 691 172 3805 65 21 0 chr3 45480787 45481267 -172555891 + LTR2B LTR ERV1 1 490 0 3648 133 46 59 chr3 45481267 45481437 -172555721 - LTR8 LTR ERV1 -519 172 1 539 238 75 0 chr3 45482006 45482153 -172555005 - MER103 DNA DNA -2 164 7 7708 21 2 0 chr3 45482239 45483154 -172554004 + L1PA3 LINE L1 5236 6152 -3 253 276 141 35 chr3 45483216 45483415 -172553743 + L1M3c LINE L1 187 406 -5907 5173 237 39 59 chr3 45483984 45485087 -172552071 + L1M3c LINE L1 805 1928 -4454 3958 198 17 0 chr3 45485087 45485808 -172551350 - MER44D DNA MER2_type 0 605 1 5173 237 39 59 chr3 45485808 45485904 -172551254 + L1M3c LINE L1 1928 2024 -4358 2041 139 126 8 chr3 45485904 45486286 -172550872 - MSTA LTR MaLR 0 428 2 8777 169 33 5 chr3 45486287 45487893 -172549265 - MSTA-int LTR MaLR 0 1651 1 2136 130 138 5 chr3 45487893 45488271 -172548887 - MSTA LTR MaLR 0 428 1 5173 237 39 59 chr3 45488271 45490894 -172546264 + L1M3c LINE L1 2023 4695 -1687 455 122 12 0 chr3 45490894 45490974 -172546184 + L1PB1 LINE L1 6061 6143 -8 189 0 0 0 chr3 45490978 45490999 -172546159 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 5173 237 39 59 chr3 45490999 45491070 -172546088 + L1M3c LINE L1 4698 4769 -1613 863 145 0 179 chr3 45491070 45491305 -172545853 + 7SK RNA RNA 1 193 0 5173 237 39 59 chr3 45491305 45491929 -172545229 + L1M3c LINE L1 4769 5151 -1231 3034 229 104 12 chr3 45491946 45493244 -172543914 + L1M4 LINE L1 3238 4768 -1378 3549 221 40 19 chr3 45493244 45494466 -172542692 + L1MC/D LINE L1 4207 5446 -743 1182 293 66 6 chr3 45495004 45495475 -172541683 + LTR33 LTR ERVL 23 521 0 1686 146 20 37 chr3 45496408 45496757 -172540401 + L1MC2 LINE L1 5989 6331 -13 816 267 117 29 chr3 45497475 45497921 -172539237 + MER90 LTR ERV1 126 610 -4 468 345 39 12 chr3 45497940 45498198 -172538960 - LTR16C LTR ERVL -137 354 90 199 281 24 37 chr3 45498335 45498417 -172538741 - MIR SINE MIR -103 159 79 1730 187 0 20 chr3 45498452 45498751 -172538407 + AluJb SINE Alu 1 293 -19 844 226 67 46 chr3 45499681 45500009 -172537149 - LTR43 LTR ERV1 -137 465 131 303 148 0 0 chr3 45500137 45500191 -172536967 - LTR60 LTR ERV1 -532 54 1 468 246 51 17 chr3 45500411 45500586 -172536572 + L1MC5 LINE L1 7733 7913 -48 22 0 0 0 chr3 45500898 45500920 -172536238 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 45501210 45501231 -172535927 + AT_rich Low_complexity Low_complexity 1 21 0 381 246 40 24 chr3 45501583 45501709 -172535449 + MLT1H LTR MaLR 1 128 -421 213 39 0 0 chr3 45502882 45502908 -172534250 + (GA)n Simple_repeat Simple_repeat 1 26 0 2101 132 0 3 chr3 45505001 45505304 -172531854 + AluSp SINE Alu 1 302 -11 366 188 0 0 chr3 45505865 45505945 -172531213 + L1ME2 LINE L1 6085 6164 0 287 318 101 8 chr3 45506276 45506405 -172530753 + MIR3 SINE MIR 64 204 -4 243 0 0 0 chr3 45506860 45506887 -172530271 + (A)n Simple_repeat Simple_repeat 1 27 0 183 139 0 0 chr3 45506901 45506937 -172530221 + (TA)n Simple_repeat Simple_repeat 1 36 0 554 40 0 14 chr3 45507871 45507945 -172529213 + (TC)n Simple_repeat Simple_repeat 2 74 0 365 296 122 21 chr3 45508032 45508319 -172528839 - L1 LINE L1 -2804 3342 3027 738 194 62 48 chr3 45508464 45508737 -172528421 - L1M4 LINE L1 -1718 4428 4152 427 306 144 14 chr3 45509339 45509561 -172527597 + L1MDa LINE L1 2331 2581 -3959 382 310 49 0 chr3 45509625 45509767 -172527391 + L1M4 LINE L1 4511 4659 -1487 328 304 83 50 chr3 45509877 45510044 -172527114 - MIR SINE MIR -46 216 41 216 0 0 0 chr3 45510329 45510353 -172526805 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1981 157 3 0 chr3 45513361 45513655 -172523503 + AluJo SINE Alu 1 295 -17 234 306 61 0 chr3 45514222 45514320 -172522838 - MIR SINE MIR -41 221 118 882 195 26 0 chr3 45515647 45515842 -172521316 + L1PB1 LINE L1 1 200 -6663 12125 152 44 46 chr3 45515844 45519247 -172517911 + L1PB1 LINE L1 636 4189 -2678 1302 112 28 0 chr3 45519247 45519425 -172517733 + AluSq SINE Alu 109 291 -22 12125 152 44 46 chr3 45519425 45522097 -172515061 + L1PB1 LINE L1 4189 6865 -2 26 0 0 0 chr3 45522083 45522109 -172515049 + AT_rich Low_complexity Low_complexity 1 26 0 * 672 204 113 30 chr3 45522722 45522952 -172514206 - Charlie2 DNA MER1_type -3 2859 2611 1812 201 131 18 chr3 45524539 45525105 -172512053 + MLT1E2 LTR MaLR 8 624 -2 518 143 0 0 chr3 45526683 45526760 -172510398 - MER81 DNA DNA -8 106 30 2204 113 140 11 chr3 45527168 45527547 -172509611 + MSTA LTR MaLR 1 428 0 1803 168 0 32 chr3 45528235 45528544 -172508614 + AluJo SINE Alu 4 302 -10 619 292 110 44 chr3 45528758 45529166 -172507992 + LTR16A1 LTR ERVL 10 444 -13 1668 199 75 35 chr3 45529648 45529920 -172507238 + L1M4 LINE L1 4337 4638 -1508 2088 125 17 0 chr3 45529920 45530208 -172506950 + AluSx SINE Alu 1 293 -19 1668 199 75 35 chr3 45530208 45530418 -172506740 + L1M4 LINE L1 4638 4838 -1308 315 227 13 27 chr3 45530433 45530508 -172506650 + L1MC2 LINE L1 6000 6073 -271 2418 103 0 3 chr3 45530508 45530829 -172506329 - THE1B LTR MaLR 0 364 45 3268 169 28 56 chr3 45530829 45531509 -172505649 + L1MC3 LINE L1 6069 6729 -1056 2122 173 26 42 chr3 45531510 45531987 -172505171 - MLT2B2 LTR ERVL 0 453 1 3602 142 93 107 chr3 45531987 45532359 -172504799 + L1MC3 LINE L1 6726 7102 -683 232 254 0 0 chr3 45532359 45532414 -172504744 + MLT1F1 LTR MaLR 39 93 -474 3602 142 93 107 chr3 45532414 45532914 -172504244 + L1MC3 LINE L1 7102 7639 -146 6887 175 18 37 chr3 45532917 45533472 -172503686 + L1MA2 LINE L1 3787 4351 -1805 2358 97 3 0 chr3 45533472 45533770 -172503388 - AluSp SINE Alu -11 302 4 6887 175 18 37 chr3 45533770 45535399 -172501759 + L1MA2 LINE L1 4351 5789 -367 674 170 195 0 chr3 45535399 45535558 -172501600 + L1PB4 LINE L1 5180 5369 -777 1050 137 17 11 chr3 45535592 45535767 -172501391 + L1PB4 LINE L1 5879 6054 -102 561 64 0 0 chr3 45536141 45536219 -172500939 + (TC)n Simple_repeat Simple_repeat 1 78 0 378 277 123 67 chr3 45536318 45536675 -172500483 - MLT1I LTR MaLR -1 408 32 2245 72 0 7 chr3 45536891 45537184 -172499974 + AluY SINE Alu 1 291 -20 2037 159 0 0 chr3 45537869 45538171 -172498987 + AluJb SINE Alu 3 304 -8 2324 103 7 0 chr3 45540066 45540368 -172496790 - AluSg SINE Alu -6 304 1 2163 144 69 62 chr3 45540760 45541183 -172495975 - MSTB LTR MaLR 0 426 1 608 148 13 110 chr3 45541228 45541273 -172495885 - MER96B DNA MER1_type? -5 412 364 1828 168 3 3 chr3 45541273 45541564 -172495594 - AluJb SINE Alu -21 291 1 608 148 13 110 chr3 45541564 45541673 -172495485 - MER96B DNA MER1_type? -53 364 273 242 242 114 60 chr3 45543084 45543233 -172493925 - MER104 DNA Tc2 -2 178 22 208 276 57 21 chr3 45543399 45543506 -172493652 + MIR SINE MIR 3 116 -92 705 259 179 32 chr3 45543522 45544064 -172493094 - L2 LINE L2 -1 3312 2688 684 264 43 5 chr3 45544287 45544495 -172492663 + LTR16C LTR ERVL 265 480 -11 897 300 44 12 chr3 45544933 45545253 -172491905 - LTR16A LTR ERVL -1 449 120 270 200 0 0 chr3 45545851 45545915 -172491243 + MIR SINE MIR 94 140 -68 251 314 172 55 chr3 45546398 45546723 -172490435 - L2 LINE L2 -834 2480 2118 2816 220 38 34 chr3 45546738 45547501 -172489657 - L1ME1 LINE L1 -5 6161 5396 375 310 101 0 chr3 45547560 45547718 -172489440 - L2 LINE L2 -1258 2056 1883 400 202 0 11 chr3 45547788 45547877 -172489281 + LTR50 LTR ERVL 407 494 -301 1493 263 57 7 chr3 45547918 45548340 -172488818 - LTR16A LTR ERVL -7 443 1 294 246 107 33 chr3 45548351 45548473 -172488685 + LTR50 LTR ERVL 552 682 -113 564 182 167 78 chr3 45549959 45550151 -172487007 + MER3 DNA MER1_type 1 209 0 669 267 11 6 chr3 45550191 45550371 -172486787 - Zaphod DNA AcHobo 0 4031 3851 330 190 0 0 chr3 45550382 45550440 -172486718 - Zaphod DNA AcHobo -1170 2861 2804 242 205 0 0 chr3 45550812 45550851 -172486307 - MER115 DNA AcHobo -159 534 496 871 223 271 0 chr3 45550872 45551164 -172485994 - MER115 DNA AcHobo -322 371 1 1621 133 80 4 chr3 45551441 45551704 -172485454 - AluJo SINE Alu -29 283 1 572 205 17 8 chr3 45552672 45552789 -172484369 + MER5C DNA MER1_type 7 124 -200 204 283 17 0 chr3 45553116 45553176 -172483982 + (CA)n Simple_repeat Simple_repeat 1 61 0 351 278 91 10 chr3 45553351 45553549 -172483609 - L1ME LINE L1 -346 5775 5562 2615 148 21 5 chr3 45554300 45554719 -172482439 + MSTB LTR MaLR 1 426 0 2236 113 0 7 chr3 45554809 45555111 -172482047 - AluSq SINE Alu -13 300 1 264 59 0 0 chr3 45555585 45555619 -172481539 + (CA)n Simple_repeat Simple_repeat 2 35 0 978 170 50 25 chr3 45556172 45556372 -172480786 - MER3 DNA MER1_type -4 205 1 1738 104 6 76 chr3 45556501 45556818 -172480340 + L1MA2 LINE L1 5997 6291 -13 1272 144 5 15 chr3 45556818 45557020 -172480138 + THE1B LTR MaLR 1 200 -164 259 153 0 153 chr3 45557157 45557229 -172479929 + THE1B LTR MaLR 295 355 0 12016 89 8 0 chr3 45557229 45558797 -172478361 + THE1B-int LTR MaLR 1 1580 0 2404 110 28 28 chr3 45558797 45559161 -172477997 + THE1B LTR MaLR 1 364 0 275 305 17 68 chr3 45559254 45559372 -172477786 + MIR SINE MIR 30 141 -67 2430 61 7 0 chr3 45559386 45559679 -172477479 + AluY SINE Alu 1 295 -16 1952 158 0 0 chr3 45559688 45559979 -172477179 + AluJb SINE Alu 1 291 -21 1968 118 17 21 chr3 45561358 45561646 -172475512 + AluSq SINE Alu 1 287 -26 241 371 54 19 chr3 45562323 45562582 -172474576 - L3 LINE CR1 -29 1548 1281 2182 151 124 81 chr3 45562643 45563174 -172473984 + MLT2B3 LTR ERVL 1 554 0 260 195 122 0 chr3 45563260 45563342 -172473816 + MER5A DNA MER1_type 18 109 -80 246 306 61 0 chr3 45563386 45563484 -172473674 - L3 LINE CR1 -443 1134 1031 1569 177 40 7 chr3 45564250 45564527 -172472631 + AluJb SINE Alu 1 286 -26 353 123 15 0 chr3 45564534 45564599 -172472559 + (CA)n Simple_repeat Simple_repeat 2 67 0 601 259 90 0 chr3 45564743 45564932 -172472226 - L2 LINE L2 -5 3308 3103 541 222 194 33 chr3 45564934 45565114 -172472044 - MER3 DNA MER1_type 0 209 1 569 266 97 28 chr3 45565137 45565459 -172471699 - L2 LINE L2 -244 3069 2721 285 238 93 60 chr3 45565543 45565694 -172471464 + L2 LINE L2 2262 2417 -897 494 284 65 9 chr3 45565695 45565807 -172471351 + L2 LINE L2 1659 1763 -1551 279 0 0 0 chr3 45565807 45565838 -172471320 + (CA)n Simple_repeat Simple_repeat 1 31 0 494 284 65 9 chr3 45565838 45565940 -172471218 + L2 LINE L2 1763 1885 -1429 410 274 142 0 chr3 45565970 45566174 -172470984 + L2 LINE L2 2429 2661 -653 299 148 0 16 chr3 45568875 45568936 -172468222 + (TA)n Simple_repeat Simple_repeat 2 61 0 285 75 0 0 chr3 45569053 45569093 -172468065 + (TC)n Simple_repeat Simple_repeat 1 40 0 390 296 97 5 chr3 45570187 45570373 -172466785 - L2 LINE L2 -3 3310 3108 1122 248 21 7 chr3 45570389 45570679 -172466479 - MER90 LTR ERV1 0 614 321 7345 43 3 0 chr3 45570829 45572043 -172465115 + L1PA5 LINE L1 4906 6123 -31 529 196 188 0 chr3 45573671 45573809 -172463349 - MER5A DNA MER1_type 0 189 26 836 203 49 167 chr3 45573820 45574432 -172462726 + MER34B LTR ERV1 1 540 -2 1651 168 19 32 chr3 45575139 45575455 -172461703 - AluJo SINE Alu 0 312 1 1097 278 101 9 chr3 45577602 45578048 -172459110 + LTR16C LTR ERVL 3 489 -2 300 232 117 59 chr3 45578063 45578208 -172458950 + MLT1I LTR MaLR 96 267 -179 201 237 171 40 chr3 45578437 45578589 -172458569 - L2 LINE L2 -147 3166 2995 1082 245 93 58 chr3 45578781 45579213 -172457945 - LTR16A1 LTR ERVL -10 447 1 207 0 0 0 chr3 45580130 45580153 -172457005 + (T)n Simple_repeat Simple_repeat 1 23 0 291 212 30 0 chr3 45580439 45580505 -172456653 + MIR SINE MIR 59 126 -82 2065 151 0 3 chr3 45580835 45581146 -172456012 + AluSx SINE Alu 1 310 -2 308 258 0 0 chr3 45581215 45581304 -172455854 - L1M4 LINE L1 -2728 3418 3330 458 234 144 30 chr3 45581623 45581790 -172455368 + MER5A DNA MER1_type 4 189 0 311 234 31 32 chr3 45584005 45584128 -172453030 - MIR SINE MIR -65 143 16 1216 147 0 68 chr3 45585198 45585253 -172451905 - MER46A DNA MER2_type -2495 236 179 275 26 51 0 chr3 45585253 45585292 -172451866 + (TTTTA)n Simple_repeat Simple_repeat 3 43 0 1216 147 0 68 chr3 45585292 45585487 -172451671 - MER46A DNA MER2_type -2552 179 3 325 194 0 14 chr3 45585493 45585565 -172451593 - MER116 DNA Mariner -2 78 8 364 309 58 7 chr3 45586671 45586810 -172450348 - MIR SINE MIR -88 174 29 2000 133 8 64 chr3 45589435 45589811 -172447347 + THE1A LTR MaLR 1 355 0 264 303 50 0 chr3 45590097 45590196 -172446962 + MIR SINE MIR 2 105 -157 1235 14 50 0 chr3 45590446 45590868 -172446290 + (TAGA)n Simple_repeat Simple_repeat 1 443 0 477 301 58 40 chr3 45590938 45591317 -172445841 - L1MEc LINE L1 -4658 1738 1353 200 204 0 0 chr3 45592408 45592452 -172444706 + GA-rich Low_complexity Low_complexity 3 46 0 22 0 0 0 chr3 45592621 45592643 -172444515 + AT_rich Low_complexity Low_complexity 1 22 0 748 304 110 33 chr3 45592754 45593271 -172443887 + HAL1b LINE L1 95 651 -697 301 256 0 78 chr3 45593944 45594073 -172443085 - MIR SINE MIR -66 196 78 479 362 7 20 chr3 45595501 45595794 -172441364 + L2 LINE L2 2443 2731 -583 2303 243 104 16 chr3 45595804 45596541 -172440617 + L1ME3A LINE L1 5363 6164 -6 389 298 60 28 chr3 45596553 45596768 -172440390 + L2 LINE L2 2745 2966 -348 1087 203 50 99 chr3 45597343 45597727 -172439431 + MLT1A1 LTR MaLR 1 365 0 379 271 16 41 chr3 45598461 45598583 -172438575 + MLT1I LTR MaLR 291 409 0 338 91 0 36 chr3 45599313 45599368 -172437790 - L1P3 LINE L1 -363 5809 5757 2466 28 7 0 chr3 45599368 45599636 -172437522 + L1PA4 LINE L1 5867 6155 0 364 294 169 0 chr3 45599639 45599775 -172437383 + MER5A DNA MER1_type 31 189 0 324 271 10 10 chr3 45599893 45599989 -172437169 - MIR SINE MIR -114 148 53 251 259 36 86 chr3 45600330 45600469 -172436689 - MIR3 SINE MIR -74 134 3 446 265 102 6 chr3 45601073 45601239 -172435919 + MER91A DNA MER1_type 5 186 -10 1008 290 54 33 chr3 45601317 45601741 -172435417 - LTR16C LTR ERVL 0 491 59 483 270 45 11 chr3 45602623 45602801 -172434357 + MIR SINE MIR 47 230 -32 315 122 0 0 chr3 45602990 45603039 -172434119 + (CA)n Simple_repeat Simple_repeat 2 50 0 219 159 23 0 chr3 45603179 45603223 -172433935 + (CCGGG)n Simple_repeat Simple_repeat 1 45 0 219 182 36 0 chr3 45603211 45603274 -172433884 + (CGG)n Simple_repeat Simple_repeat 1 65 0 374 282 122 37 chr3 45603452 45603734 -172433424 + L2 LINE L2 2725 3024 -248 897 267 78 32 chr3 45604186 45604394 -172432764 + LTR16A LTR ERVL 90 322 -128 1272 166 194 0 chr3 45604394 45604647 -172432511 - AluJb SINE Alu -10 302 1 897 267 78 32 chr3 45604647 45604783 -172432375 + LTR16A LTR ERVL 322 450 0 361 243 61 94 chr3 45604807 45604988 -172432170 + MIR SINE MIR 23 197 -65 515 146 0 31 chr3 45605344 45605440 -172431718 + L1MA8 LINE L1 6199 6291 0 1037 223 49 4 chr3 45605440 45605705 -172431453 + L1ME3A LINE L1 5865 6141 -29 761 210 38 21 chr3 45606014 45606200 -172430958 - MER5A DNA MER1_type 0 189 1 325 357 0 0 chr3 45606843 45606969 -172430189 + L2 LINE L2 2374 2499 -815 727 208 0 0 chr3 45607062 45607187 -172429971 - FLAM_A SINE Alu -8 125 1 1991 162 109 13 chr3 45607371 45607766 -172429392 + MER83 LTR ERV1 16 448 0 408 248 0 0 chr3 45607810 45607915 -172429243 - L2 LINE L2 -5 3308 3204 225 125 0 0 chr3 45607916 45607948 -172429210 - MER70A LTR ERVL 0 472 441 * 2632 182 46 4 chr3 45607946 45608403 -172428755 - MER70B LTR ERVL -102 476 1 181 279 131 0 chr3 45608425 45608486 -172428672 + L2 LINE L2 3241 3309 -4 879 202 41 58 chr3 45609349 45609592 -172427566 - MIR SINE MIR -7 255 17 317 195 49 37 chr3 45609632 45609714 -172427444 + MER117 DNA MER1_type 65 147 -50 595 164 0 41 chr3 45609753 45609875 -172427283 + MER31B LTR ERV1 1 117 -349 * 641 231 63 111 chr3 45609871 45610018 -172427140 - MLT1I LTR MaLR -6 403 250 2317 117 0 0 chr3 45610018 45610317 -172426841 - AluSx SINE Alu -13 299 1 641 231 63 111 chr3 45610317 45610502 -172426656 - MLT1I LTR MaLR -159 250 87 1427 224 111 8 chr3 45610647 45611009 -172426149 + LTR16A LTR ERVL 52 450 0 1113 162 69 0 chr3 45611111 45611315 -172425843 - MER20 DNA MER1_type -1 218 1 30 27 0 0 chr3 45611605 45611642 -172425516 + AT_rich Low_complexity Low_complexity 1 37 0 1161 204 42 26 chr3 45612271 45612579 -172424579 - Charlie2 DNA MER1_type -7 2855 2543 943 136 28 51 chr3 45613453 45613630 -172423528 - MER90 LTR ERV1 -402 173 1 642 259 35 0 chr3 45613630 45613794 -172423364 - MLT1L LTR MaLR -83 532 363 298 232 314 11 chr3 45613900 45614085 -172423073 - L2 LINE L2 -70 3243 3003 547 263 30 89 chr3 45614443 45614713 -172422445 + MLT1J LTR MaLR 3 256 -255 232 186 0 0 chr3 45614847 45614890 -172422268 + T-rich Low_complexity Low_complexity 1 43 0 1186 124 0 0 chr3 45617132 45617293 -172419865 - AluSp SINE Alu -19 294 134 319 244 35 0 chr3 45617488 45617574 -172419584 + MLT1J LTR MaLR 443 531 -18 326 258 66 101 chr3 45617611 45617809 -172419349 + MLT1J LTR MaLR 271 461 -50 357 324 180 27 chr3 45618778 45619776 -172417382 + L2 LINE L2 1747 2897 -417 25 31 0 0 chr3 45620846 45620878 -172416280 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chr3 45621324 45621346 -172415812 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 288 324 226 0 chr3 45624001 45624205 -172412953 - MIR SINE MIR -12 250 1 1746 260 73 4 chr3 45624227 45624677 -172412481 - MLT1H LTR MaLR -8 541 61 1436 204 21 11 chr3 45624677 45624962 -172412196 + L1MD3 LINE L1 7540 7827 -168 1015 279 32 75 chr3 45625022 45625657 -172411501 - L1M4 LINE L1 -2083 4063 3465 1631 135 0 11 chr3 45625657 45625947 -172411211 + AluSx SINE Alu 33 312 0 1015 279 32 75 chr3 45625947 45626067 -172411091 - L1M4 LINE L1 -2681 3465 3341 9879 41 2 0 chr3 45626169 45627364 -172409794 - L1P LINE L1 -1281 4865 3668 429 213 64 11 chr3 45627364 45627458 -172409700 - Charlie2 DNA MER1_type -2569 293 195 2266 209 39 39 chr3 45627458 45628023 -172409135 - MER74B LTR ERVL 0 622 58 721 207 37 11 chr3 45628493 45628681 -172408477 + L1MC4 LINE L1 7711 7903 -139 248 295 63 32 chr3 45628888 45628983 -172408175 - L2 LINE L2 0 3313 3216 1825 184 18 18 chr3 45629312 45629644 -172407514 + MLT1A1 LTR MaLR 19 350 -15 2020 87 14 0 chr3 45629678 45630035 -172407123 - AluSx SINE Alu 0 363 3 403 275 62 44 chr3 45631090 45631250 -172405908 - L2 LINE L2 -42 3271 3109 338 349 5 48 chr3 45632694 45632883 -172404275 + L1M4 LINE L1 1037 1217 -5325 832 222 67 0 chr3 45632905 45633099 -172404059 - L1MEc LINE L1 -6154 242 36 402 347 9 36 chr3 45633112 45633334 -172403824 + L2 LINE L2 3098 3313 0 640 320 69 0 chr3 45633527 45633774 -172403384 + MER102b DNA MER1_type 27 290 -51 982 277 87 30 chr3 45634021 45634414 -172402744 - MLT1J LTR MaLR 0 511 97 294 348 36 0 chr3 45634469 45634581 -172402577 + MER102a DNA MER1_type 213 328 -2 2027 32 4 16 chr3 45634604 45634855 -172402303 - L1PA4 LINE L1 0 6155 5908 516 136 0 0 chr3 45635559 45635647 -172401511 + (CA)n Simple_repeat Simple_repeat 2 89 0 379 276 57 90 chr3 45635662 45636049 -172401109 + HAL1 LINE L1 824 1197 -1310 317 224 121 35 chr3 45636035 45636151 -172401007 + L1MB2 LINE L1 5152 5277 -869 * 2079 112 0 19 chr3 45636155 45636469 -172400689 + AluSq SINE Alu 1 308 -5 1674 188 64 6 chr3 45636472 45636817 -172400341 - MLT1A1 LTR MaLR 0 365 1 1037 267 66 24 chr3 45636829 45637297 -172399861 + L1MB2 LINE L1 5284 5771 -2037 28 0 0 0 chr3 45637517 45637545 -172399613 + AT_rich Low_complexity Low_complexity 1 28 0 500 285 156 73 chr3 45637664 45638113 -172399045 + MLT1H LTR MaLR 14 499 -50 3536 116 11 0 chr3 45638123 45638647 -172398511 + L1PB3 LINE L1 5621 6150 -4 24 0 0 0 chr3 45639136 45639160 -172397998 + AT_rich Low_complexity Low_complexity 1 24 0 1186 187 35 92 chr3 45639240 45639720 -172397438 - MER74A LTR ERVL -32 526 2 1518 240 99 81 chr3 45639877 45640461 -172396697 - MLT1G1 LTR MaLR 0 595 1 343 264 103 0 chr3 45640914 45641001 -172396157 + MIR SINE MIR 94 189 -73 764 253 56 0 chr3 45641923 45642121 -172395037 + MER3 DNA MER1_type 1 209 0 194 284 65 52 chr3 45642203 45642358 -172394800 - L2 LINE L2 -257 3056 2900 189 111 0 0 chr3 45642751 45642778 -172394380 + MIR SINE MIR 226 252 -10 260 295 78 39 chr3 45642863 45642992 -172394166 - L2 LINE L2 0 3272 3139 2137 155 32 5 chr3 45643408 45643788 -172393370 + MLT1B LTR MaLR 1 390 0 194 0 39 0 chr3 45644243 45644269 -172392889 + (CA)n Simple_repeat Simple_repeat 2 28 0 261 257 40 0 chr3 45645178 45645252 -172391906 + MIR SINE MIR 109 185 -77 2159 152 21 5 chr3 45646276 45646664 -172390494 + L1MB2 LINE L1 5775 6168 -3 392 320 23 8 chr3 45646700 45646828 -172390330 - L1MC/D LINE L1 -2172 5636 5507 205 324 84 28 chr3 45647376 45647518 -172389640 - MIR SINE MIR -82 180 31 342 286 56 68 chr3 45648556 45648717 -172388441 + MER115 DNA AcHobo 276 434 -259 254 184 0 0 chr3 45648735 45648773 -172388385 + Zaphod DNA AcHobo 3994 4031 0 1245 248 165 13 chr3 45649279 45649734 -172387424 - MLT1H1 LTR MaLR 0 555 32 1065 167 0 0 chr3 45649789 45649957 -172387201 - AluJ SINE Alu -16 296 129 264 100 67 33 chr3 45649982 45649996 -172387162 - AluJ SINE Alu -168 134 122 207 0 0 0 chr3 45649996 45650019 -172387139 + (TTG)n Simple_repeat Simple_repeat 2 24 0 264 100 67 33 chr3 45650019 45650064 -172387094 - AluJ SINE Alu -180 122 73 370 330 43 0 chr3 45651627 45651742 -172385416 + MIR3 SINE MIR 13 132 -76 471 78 0 0 chr3 45651893 45651957 -172385201 + (TG)n Simple_repeat Simple_repeat 2 65 0 2408 197 63 20 chr3 45652273 45652812 -172384346 + MER68 LTR ERV1 1 562 0 272 331 2 2 chr3 45653413 45653496 -172383662 - MIR SINE MIR -105 103 20 740 97 18 0 chr3 45655343 45655457 -172381701 + (GGAA)n Simple_repeat Simple_repeat 2 117 0 189 107 0 0 chr3 45655557 45655585 -172381573 + (GGAA)n Simple_repeat Simple_repeat 3 30 0 288 320 21 10 chr3 45656202 45656299 -172380859 + L2 LINE L2 3214 3311 -2 1856 129 0 11 chr3 45657145 45657425 -172379733 + AluSx SINE Alu 23 299 -13 2743 13 0 0 chr3 45662128 45662436 -172374722 + AluYa5 SINE Alu 1 308 -3 361 294 83 61 chr3 45662445 45662673 -172374485 + L1MB7 LINE L1 4907 5139 -1007 960 226 15 0 chr3 45662770 45662969 -172374189 + MER3 DNA MER1_type 1 202 -7 427 315 74 39 chr3 45662982 45663375 -172373783 + L1MB7 LINE L1 5268 5686 -476 778 157 0 30 chr3 45713603 45713737 -172323421 + FLAM_C SINE Alu 11 140 -3 896 100 0 14 chr3 45715766 45715906 -172321252 + AluSg/x SINE Alu 173 310 -2 191 333 51 0 chr3 45716276 45716354 -172320804 - MIR SINE MIR -77 185 104 1644 222 47 40 chr3 45716642 45717140 -172320018 + L1MB7 LINE L1 5664 6168 -16 2146 119 3 0 chr3 45717185 45717496 -172319662 + AluSx SINE Alu 1 312 0 431 244 109 0 chr3 45717680 45717799 -172319359 + MIR SINE MIR 99 230 -32 234 128 0 0 chr3 45719400 45719439 -172317719 + (TCC)n Simple_repeat Simple_repeat 1 39 0 1158 166 37 0 chr3 45721298 45721485 -172315673 + MER20 DNA MER1_type 1 194 -25 1896 62 12 0 chr3 45722378 45722621 -172314537 - L1PA7 LINE L1 0 6154 5909 540 250 83 13 chr3 45723246 45723402 -172313756 - MIR SINE MIR -28 234 68 2432 67 0 0 chr3 45724811 45725111 -172312047 - AluY SINE Alu -11 300 1 986 124 27 16 chr3 45725148 45725334 -172311824 + MER53 DNA DNA 2 189 0 22 94 0 0 chr3 45725451 45725515 -172311643 + AT_rich Low_complexity Low_complexity 1 64 0 502 278 147 54 chr3 45725684 45726073 -172311085 + MLT1K LTR MaLR 150 574 -14 325 258 21 11 chr3 45726762 45726858 -172310300 - MIR SINE MIR -74 134 45 22 0 0 0 chr3 45726962 45726984 -172310174 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr3 45727322 45727349 -172309809 + AT_rich Low_complexity Low_complexity 1 27 0 1750 226 68 86 chr3 45727640 45728122 -172309036 + MLT1H LTR MaLR 12 484 -65 2351 110 0 0 chr3 45728122 45728431 -172308727 - AluSg SINE Alu 0 310 2 1750 226 68 86 chr3 45728431 45728496 -172308662 + MLT1H LTR MaLR 484 549 0 922 132 0 0 chr3 45728696 45728825 -172308333 + AluJo SINE Alu 1 129 -183 207 167 0 0 chr3 45728825 45728867 -172308291 + (CATATA)n Simple_repeat Simple_repeat 1 42 0 1283 122 0 11 chr3 45728867 45729224 -172307934 + AluJo SINE Alu 117 471 0 630 295 88 43 chr3 45729487 45729797 -172307361 - LTR16A1 LTR ERVL -3 479 153 3682 153 40 2 chr3 45730906 45731488 -172305670 + MER6A DNA MER2_type 2 605 0 23 54 0 0 chr3 45731689 45731726 -172305432 + AT_rich Low_complexity Low_complexity 1 37 0 364 255 283 0 chr3 45732222 45732367 -172304791 + MER5A DNA MER1_type 4 189 0 648 235 86 27 chr3 45732827 45733014 -172304144 - MER3 DNA MER1_type 0 209 12 2011 139 3 0 chr3 45733233 45733527 -172303631 + AluSq SINE Alu 2 296 -17 180 0 0 0 chr3 45733527 45733547 -172303611 + (GA)n Simple_repeat Simple_repeat 2 21 0 225 0 0 0 chr3 45734069 45734094 -172303064 + (A)n Simple_repeat Simple_repeat 1 25 0 26 0 0 0 chr3 45734184 45734210 -172302948 + AT_rich Low_complexity Low_complexity 1 26 0 2093 104 3 7 chr3 45734213 45734502 -172302656 + AluSq SINE Alu 1 288 -25 27 0 0 0 chr3 45734851 45734878 -172302280 + AT_rich Low_complexity Low_complexity 1 27 0 555 313 76 61 chr3 45735127 45735225 -172301933 + HAL1 LINE L1 800 895 -1612 2151 135 0 3 chr3 45735225 45735522 -172301636 + AluSx SINE Alu 1 296 -16 555 313 76 61 chr3 45735522 45735912 -172301246 + HAL1 LINE L1 895 1295 -1212 279 244 63 19 chr3 45736031 45736134 -172301024 + HAL1b LINE L1 388 1578 -866 382 172 216 0 chr3 45736136 45736252 -172300906 - MER104 DNA Tc2 -2 178 38 330 289 74 0 chr3 45736301 45736436 -172300722 + HAL1 LINE L1 1589 1733 -774 239 254 0 0 chr3 45736809 45736864 -172300294 + HAL1 LINE L1 2275 2329 -178 195 129 0 0 chr3 45737118 45737149 -172300009 + (TA)n Simple_repeat Simple_repeat 2 32 0 506 166 280 78 chr3 45737980 45738167 -172298991 + Charlie2 DNA MER1_type 26 251 -2531 2662 209 70 9 chr3 45738167 45738727 -172298431 + MLT1E3 LTR MaLR 1 594 -30 267 242 75 92 chr3 45738736 45738856 -172298302 + Charlie2 DNA MER1_type 250 367 -2415 554 187 75 0 chr3 45738875 45739009 -172298149 + Charlie2 DNA MER1_type 2264 2407 -455 593 192 233 12 chr3 45739024 45739196 -172297962 + Charlie2 DNA MER1_type 2651 2860 -2 239 241 72 12 chr3 45739214 45739297 -172297861 + MLT1K LTR MaLR 16 103 -485 690 237 77 69 chr3 45739459 45739748 -172297410 + MLT1K LTR MaLR 127 441 -147 403 235 139 0 chr3 45739835 45739950 -172297208 + MLT1K LTR MaLR 424 554 -34 38 0 0 0 chr3 45740471 45740509 -172296649 + AT_rich Low_complexity Low_complexity 1 38 0 23 86 0 0 chr3 45740705 45740763 -172296395 + AT_rich Low_complexity Low_complexity 1 58 0 240 254 51 34 chr3 45740776 45740894 -172296264 + L1MC4a LINE L1 5839 5958 -1850 1947 111 46 86 chr3 45741193 45741544 -172295614 + MER1B DNA MER1_type 1 337 0 1495 173 0 15 chr3 45741696 45741956 -172295202 + L1PA15 LINE L1 5910 6165 0 897 210 2 0 chr3 45742707 45743333 -172293825 + (TA)n Simple_repeat Simple_repeat 1 807 0 198 0 0 0 chr3 45743904 45743926 -172293232 + (TTA)n Simple_repeat Simple_repeat 3 24 0 1553 34 0 0 chr3 45743926 45744101 -172293057 - L1PA4 LINE L1 -18 6137 5963 271 232 0 0 chr3 45744268 45744337 -172292821 - L1MB7 LINE L1 -2 6182 6114 2153 103 10 0 chr3 45744340 45744632 -172292526 + AluSx SINE Alu 3 297 -15 1055 169 0 0 chr3 45744632 45744798 -172292360 + AluSg/x SINE Alu 132 297 -13 3633 153 45 6 chr3 45744800 45745462 -172291696 - L1MB7 LINE L1 -57 6127 5440 1356 285 56 19 chr3 45745578 45746271 -172290887 + L1MC4a LINE L1 4885 5610 -783 6016 195 98 78 chr3 45746275 45746327 -172290831 + L1MC4a LINE L1 5834 5883 -461 1680 183 6 28 chr3 45746327 45746644 -172290514 + AluJb SINE Alu 1 310 -2 6016 195 98 78 chr3 45746644 45747819 -172289339 + L1MC4a LINE L1 5883 7033 689 2281 97 0 7 chr3 45747819 45748119 -172289039 + AluSc SINE Alu 1 298 -11 6016 195 98 78 chr3 45748119 45748715 -172288443 + L1MC4a LINE L1 7033 6220 -124 1774 158 7 17 chr3 45748715 45749007 -172288151 - AluJo SINE Alu -23 289 1 6016 195 98 78 chr3 45749007 45749136 -172288022 + L1MC4a LINE L1 6219 6344 0 1733 135 96 11 chr3 45749298 45749579 -172287579 - AluSx SINE Alu -7 305 1 337 188 135 10 chr3 45749691 45749787 -172287371 + MER33 DNA MER1_type 27 134 -190 1449 111 0 0 chr3 45749799 45749988 -172287170 + AluY SINE Alu 1 189 -122 1213 103 0 17 chr3 45750061 45750235 -172286923 - AluY SINE Alu -1 310 140 822 189 74 33 chr3 45750402 45750709 -172286449 - MER63 DNA MER1_type 0 1062 712 1155 101 24 6 chr3 45750725 45750894 -172286264 - MER30 DNA MER1_type -58 172 1 236 269 167 0 chr3 45750895 45750973 -172286185 - MER63 DNA MER1_type -119 717 1 3970 153 49 7 chr3 45751001 45751679 -172285479 + L1MB8 LINE L1 5472 6177 -1 1934 115 50 7 chr3 45751944 45752222 -172284936 + AluSx SINE Alu 1 290 -22 199 363 40 8 chr3 45752586 45752710 -172284448 + L2 LINE L2 3185 3312 -1 1178 254 81 39 chr3 45753371 45753805 -172283353 - LTR16A1 LTR ERVL -2 455 4 200 306 20 0 chr3 45754104 45754153 -172283005 + MIR3 SINE MIR 107 156 -52 2088 111 0 17 chr3 45754224 45754521 -172282637 + AluSx SINE Alu 1 292 -20 22 0 0 0 chr3 45754799 45754821 -172282337 + AT_rich Low_complexity Low_complexity 1 22 0 1848 117 15 7 chr3 45755721 45756022 -172281136 + AluSx SINE Alu 6 308 0 294 50 0 0 chr3 45756021 45756061 -172281097 + (TA)n Simple_repeat Simple_repeat 2 41 0 947 217 38 0 chr3 45756597 45756781 -172280377 - MER63A DNA MER1_type 0 210 20 196 289 0 0 chr3 45756803 45756855 -172280303 - MIR SINE MIR -76 132 81 651 116 0 0 chr3 45757053 45757139 -172280019 - AluSp/q SINE Alu -14 299 214 189 281 70 0 chr3 45757569 45757626 -172279532 - MIR3 SINE MIR -23 185 125 250 230 204 9 chr3 45758187 45758300 -172278858 - MIR SINE MIR -81 181 47 201 315 0 19 chr3 45759365 45759419 -172277739 - MIR SINE MIR -119 89 37 186 329 49 12 chr3 45759491 45759573 -172277585 - MER5A DNA MER1_type -6 183 99 2147 111 3 0 chr3 45759881 45760178 -172276980 + AluSq SINE Alu 1 298 -15 2192 96 0 10 chr3 45760190 45760481 -172276677 + AluSx SINE Alu 3 290 -22 419 202 64 0 chr3 45760819 45760913 -172276245 + HsTC2 DNA Tc2 1 100 -1798 2136 118 16 3 chr3 45761341 45761645 -172275513 + AluSq SINE Alu 3 310 -3 2229 111 0 3 chr3 45761738 45762036 -172275122 + AluSc SINE Alu 1 297 -12 1653 199 0 14 chr3 45762541 45762828 -172274330 + AluJo SINE Alu 1 283 -29 1656 147 3 57 chr3 45763043 45763343 -172273815 - AluJo SINE Alu -28 284 1 1682 109 117 32 chr3 45763762 45764045 -172273113 + AluJo SINE Alu 1 307 -5 1177 235 42 98 chr3 45764295 45764866 -172272292 + MER34 LTR ERV1 1 539 -3 1336 98 132 10 chr3 45765185 45765390 -172271768 + MER30 DNA MER1_type 1 230 0 844 260 64 4 chr3 45766743 45766993 -172270165 - MER115 DNA AcHobo -425 268 4 1751 94 13 17 chr3 45767123 45767357 -172269801 - AluSg/x SINE Alu -12 298 66 249 305 73 0 chr3 45767693 45767775 -172269383 + MIR SINE MIR 3 90 -172 825 252 78 0 chr3 45767879 45768121 -172269037 - LTR16A1 LTR ERVL -31 426 166 1465 207 89 3 chr3 45768153 45768457 -172268701 - MLT1A2 LTR MaLR -4 370 41 2504 50 3 10 chr3 45768464 45768764 -172268394 - AluY SINE Alu -13 298 1 437 231 62 44 chr3 45768823 45768983 -172268175 - LTR16A1 LTR ERVL -294 163 1 1989 111 35 3 chr3 45769234 45769523 -172267635 - AluSc SINE Alu -11 298 1 577 73 0 0 chr3 45769541 45769609 -172267549 + AluSg1 SINE Alu 24 91 -218 1228 164 176 70 chr3 45769731 45769971 -172267187 + Charlie1b DNA MER1_type 73 286 -2475 2087 128 3 0 chr3 45769971 45770269 -172266889 - AluSq SINE Alu -13 300 2 1228 164 176 70 chr3 45770269 45770280 -172266878 + Charlie1b DNA MER1_type 286 294 -2467 2532 66 0 0 chr3 45770280 45770584 -172266574 - AluY SINE Alu -7 304 1 1228 164 176 70 chr3 45770584 45770734 -172266424 + Charlie1b DNA MER1_type 294 518 -5 394 268 106 22 chr3 45771601 45771780 -172265378 - MIR SINE MIR -64 198 5 278 278 0 37 chr3 45773168 45773276 -172263882 + L1ME LINE L1 5723 5826 -295 2139 110 0 0 chr3 45773278 45773560 -172263598 + AluSx SINE Alu 1 282 -30 225 0 0 0 chr3 45773563 45773588 -172263570 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 2029 119 3 26 chr3 45773600 45773902 -172263256 + AluSq SINE Alu 1 295 -18 471 287 42 59 chr3 45774635 45774725 -172262433 - MIR SINE MIR -1 261 171 2028 131 7 10 chr3 45774725 45775022 -172262136 + AluSx SINE Alu 1 296 -16 471 287 42 59 chr3 45775022 45775168 -172261990 - MIR SINE MIR -91 171 29 201 175 0 63 chr3 45775683 45775746 -172261412 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 288 0 0 0 chr3 45775851 45775883 -172261275 + (TG)n Simple_repeat Simple_repeat 1 32 0 1887 118 7 35 chr3 45775883 45776170 -172260988 - AluSx SINE Alu -33 279 1 368 130 26 0 chr3 45776194 45776271 -172260887 + (CTTG)n Simple_repeat Simple_repeat 2 80 0 377 53 0 35 chr3 45776276 45776333 -172260825 + (TCTCC)n Simple_repeat Simple_repeat 2 56 0 2192 105 3 25 chr3 45776947 45777261 -172259897 - AluSx SINE Alu -5 307 1 512 184 64 37 chr3 45777281 45777418 -172259740 - L1ME1 LINE L1 0 6178 6032 235 0 0 0 chr3 45777447 45777473 -172259685 + (TTTA)n Simple_repeat Simple_repeat 2 144 0 2102 109 0 3 chr3 45777473 45777758 -172259400 - AluSq SINE Alu -1 309 1 2352 74 0 3 chr3 45777760 45778071 -172259087 - AluY SINE Alu -1 310 1 1269 77 77 10 chr3 45778082 45778289 -172258869 - L1MA5A LINE L1 -3 6294 6074 556 338 80 31 chr3 45778365 45778717 -172258441 - L2 LINE L2 -18 3295 2927 999 192 20 15 chr3 45778855 45779058 -172258100 + MER3 DNA MER1_type 1 204 -5 2081 107 14 0 chr3 45779104 45779394 -172257764 + AluSg SINE Alu 1 294 -16 220 348 67 7 chr3 45779423 45779558 -172257600 - L2 LINE L2 -731 2583 2441 2082 127 0 13 chr3 45779620 45779936 -172257222 - AluSx SINE Alu 0 312 1 216 162 0 0 chr3 45779964 45780001 -172257157 + (CA)n Simple_repeat Simple_repeat 2 38 0 671 159 55 55 chr3 45780547 45780778 -172256380 + MER106B DNA MER1_type 1 1058 -1 2342 165 15 0 chr3 45780830 45781242 -172255916 + L1MB2 LINE L1 5751 6168 -3 1146 122 0 0 chr3 45781279 45781459 -172255699 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 268 61 82 0 chr3 45781460 45781509 -172255649 + GA-rich Low_complexity Low_complexity 4 56 0 2420 231 107 13 chr3 45781971 45782716 -172254442 - L1ME3 LINE L1 -2 6160 5346 270 329 158 7 chr3 45783212 45783364 -172253794 + MLT1L LTR MaLR 99 273 -342 3079 117 66 64 chr3 45783707 45784253 -172252905 + LTR10A LTR ERV1 1 547 -62 334 270 60 10 chr3 45784303 45784403 -172252755 - MLT1L LTR MaLR -162 453 349 269 164 180 0 chr3 45784614 45784675 -172252483 + MLT1L LTR MaLR 530 601 -14 1475 212 3 16 chr3 45784680 45784996 -172252162 + AluJo SINE Alu 1 312 0 343 135 95 14 chr3 45785070 45785144 -172252014 - MER3 DNA MER1_type -5 204 125 2086 116 0 3 chr3 45785144 45785446 -172251712 + AluSg SINE Alu 1 301 -9 1310 83 0 0 chr3 45785448 45785616 -172251542 + AluSg/x SINE Alu 133 300 -10 447 159 0 0 chr3 45785632 45785701 -172251457 - MER3 DNA MER1_type -81 128 60 2425 137 67 28 chr3 45785702 45786077 -172251081 + MER83 LTR ERV1 1 397 -51 2095 107 0 3 chr3 45786077 45786376 -172250782 - AluSx SINE Alu -14 298 1 2425 137 67 28 chr3 45786376 45786431 -172250727 + MER83 LTR ERV1 397 448 0 17982 144 39 32 chr3 45786431 45788409 -172248749 + MER83-int LTR ERV1 12 1974 -2311 2174 92 17 3 chr3 45788409 45788704 -172248454 - AluSc SINE Alu -10 299 1 17982 144 39 32 chr3 45788704 45790122 -172247036 + MER83-int LTR ERV1 1974 4274 -11 2193 114 166 5 chr3 45790123 45790509 -172246649 + MER83 LTR ERV1 1 448 0 446 297 84 57 chr3 45791575 45791838 -172245320 + L1MC4a LINE L1 4434 4703 -1443 307 284 100 96 chr3 45791951 45791967 -172245191 + L1MC4a LINE L1 4730 4744 -1402 1615 139 109 0 chr3 45791967 45792234 -172244924 - AluSx SINE Alu -14 298 3 307 284 100 96 chr3 45792234 45792455 -172244703 + L1MC4a LINE L1 4744 4971 -1175 2097 222 49 56 chr3 45792455 45792704 -172244454 + MLT1E2 LTR MaLR 1 250 -376 1477 111 147 20 chr3 45792704 45792994 -172244164 - AluSx SINE Alu 0 322 1 2097 222 49 56 chr3 45792994 45793373 -172243785 + MLT1E2 LTR MaLR 250 626 0 307 284 100 96 chr3 45793373 45793395 -172243763 + L1MC4a LINE L1 4971 4991 -1155 1521 189 80 13 chr3 45793397 45793772 -172243386 + L1ME2 LINE L1 5762 6164 0 967 271 46 60 chr3 45793830 45794243 -172242915 + L1MC4a LINE L1 5557 5963 -1845 1762 154 11 0 chr3 45794245 45794546 -172242612 + AluJo SINE Alu 3 306 0 803 189 6 19 chr3 45794588 45794747 -172242411 + FRAM SINE Alu 1 157 -19 1982 105 28 0 chr3 45795109 45795394 -172241764 + AluSx SINE Alu 1 293 -19 404 176 0 35 chr3 45795624 45795709 -172241449 + MLT1C LTR MaLR 386 467 0 3327 102 45 0 chr3 45795761 45796252 -172240906 + LTR10D LTR ERV1 1 513 0 201 280 75 47 chr3 45796272 45796379 -172240779 - MIR SINE MIR -65 143 34 255 294 128 9 chr3 45797418 45797527 -172239631 - MER117 DNA MER1_type -73 124 3 196 310 62 48 chr3 45797718 45797863 -172239295 + L2 LINE L2 2576 2722 -592 2116 115 13 0 chr3 45798263 45798567 -172238591 - AluSp SINE Alu -5 308 1 1775 164 0 10 chr3 45799028 45799333 -172237825 + AluJo SINE Alu 6 307 -5 2030 101 18 0 chr3 45799645 45799923 -172237235 + AluSx SINE Alu 6 288 -24 398 329 49 0 chr3 45800130 45800294 -172236864 - MIR SINE MIR -1 261 90 183 42 0 0 chr3 45801015 45801039 -172236119 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2299 78 0 0 chr3 45801041 45801337 -172235821 - AluSg SINE Alu -14 296 1 1897 138 3 6 chr3 45801497 45801808 -172235350 + AluSx SINE Alu 1 310 -2 838 188 0 0 chr3 45801808 45801981 -172235177 + AluSg/x SINE Alu 132 304 0 357 24 0 0 chr3 45802077 45802119 -172235039 + (CA)n Simple_repeat Simple_repeat 2 43 0 266 254 64 45 chr3 45802296 45802406 -172234752 + MIR SINE MIR 35 146 -62 421 211 38 83 chr3 45802441 45802574 -172234584 - L2 LINE L2 -2 3311 3185 199 273 164 18 chr3 45802576 45802686 -172234472 + MIR SINE MIR 130 255 -7 2059 99 24 3 chr3 45802713 45803005 -172234153 - AluSx SINE Alu -14 298 1 824 47 120 20 chr3 45803037 45803187 -172233971 + AluYb8 SINE Alu 2 166 -152 2234 76 0 10 chr3 45803301 45803602 -172233556 + AluY SINE Alu 1 298 -13 507 180 57 49 chr3 45805327 45805449 -172231709 + MIR SINE MIR 22 144 -64 222 37 0 0 chr3 45805568 45805595 -172231563 + (A)n Simple_repeat Simple_repeat 1 27 0 1731 117 3 38 chr3 45805985 45806276 -172230882 + AluSx SINE Alu 1 281 -31 356 228 33 11 chr3 45806295 45806387 -172230771 - MER112 DNA MER1_type -100 160 67 194 138 69 0 chr3 45806392 45806450 -172230708 + (TA)n Simple_repeat Simple_repeat 1 62 0 210 293 35 0 chr3 45809321 45809379 -172227779 - MER5A DNA MER1_type 0 189 130 1008 68 8 0 chr3 45809382 45809514 -172227644 + AluSp SINE Alu 1 133 -180 198 0 0 0 chr3 45809590 45809612 -172227546 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 1279 155 0 10 chr3 45809631 45809838 -172227320 - AluSq SINE Alu -108 205 1 215 176 216 0 chr3 45809839 45809890 -172227268 - MER5B DNA MER1_type -116 62 1 202 83 0 62 chr3 45810059 45810107 -172227051 + (GTTTG)n Simple_repeat Simple_repeat 5 49 0 194 62 31 0 chr3 45810195 45810227 -172226931 + (TTG)n Simple_repeat Simple_repeat 1 33 0 495 247 121 6 chr3 45810488 45810534 -172226624 - HAL1 LINE L1 0 2507 2468 2124 114 3 13 chr3 45810534 45810849 -172226309 + AluSx SINE Alu 1 312 0 495 247 121 6 chr3 45810849 45810984 -172226174 - HAL1 LINE L1 -39 2468 2305 739 168 81 65 chr3 45811013 45811115 -172226043 - HAL1 LINE L1 -829 1678 1570 2110 120 0 0 chr3 45811115 45811414 -172225744 + AluSx SINE Alu 3 301 -11 739 168 81 65 chr3 45811414 45811496 -172225662 - HAL1 LINE L1 -937 1570 1491 661 140 0 0 chr3 45811514 45811607 -172225551 - AluSg/x SINE Alu -22 290 198 1503 211 63 85 chr3 45811620 45811961 -172225197 - HAL1 LINE L1 -1029 1478 1158 2369 68 0 6 chr3 45811961 45812272 -172224886 - AluY SINE Alu -2 309 1 1503 211 63 85 chr3 45812272 45812611 -172224547 - HAL1 LINE L1 -1349 1158 813 1408 268 109 62 chr3 45812605 45813739 -172223419 + L1MC4a LINE L1 5730 6917 -891 * 1876 134 0 7 chr3 45813776 45814067 -172223091 + AluJb SINE Alu 18 306 -6 700 177 113 56 chr3 45814073 45814339 -172222819 - L1MC5 LINE L1 -797 7164 6884 236 248 34 78 chr3 45814445 45814576 -172222582 + L1MC5 LINE L1 7246 7403 -405 1897 190 41 62 chr3 45814576 45815012 -172222146 + Charlie4a DNA MER1_type 2 428 -1533 2063 98 0 3 chr3 45815012 45815330 -172221828 + AluSq SINE Alu 1 317 0 1897 190 41 62 chr3 45815330 45815409 -172221749 + Charlie4a DNA MER1_type 428 507 -1 236 248 34 78 chr3 45815409 45815422 -172221736 + L1MC5 LINE L1 7403 7415 -393 971 124 0 0 chr3 45815427 45815564 -172221594 - AluSq/x SINE Alu -176 137 1 567 199 178 0 chr3 45815564 45815710 -172221448 - HAL1 LINE L1 -2320 187 16 2180 95 3 22 chr3 45816581 45816896 -172220262 + AluSp SINE Alu 1 309 -4 924 105 78 0 chr3 45816896 45817049 -172220109 + AluSg/x SINE Alu 132 296 -14 207 353 57 16 chr3 45817283 45817405 -172219753 - MIR SINE MIR -41 221 95 264 59 0 0 chr3 45817583 45817617 -172219541 + (CAA)n Simple_repeat Simple_repeat 3 36 0 252 0 0 0 chr3 45817912 45817940 -172219218 + (CA)n Simple_repeat Simple_repeat 2 29 0 1125 196 4 31 chr3 45818162 45818387 -172218771 + MER20 DNA MER1_type 1 219 0 1141 167 38 5 chr3 45818866 45819076 -172218082 + AluSg/x SINE Alu 83 299 -11 2387 173 42 9 chr3 45819215 45819665 -172217493 + MLT1C LTR MaLR 3 467 0 1263 315 52 31 chr3 45819718 45820143 -172217015 + MER115 DNA AcHobo 31 464 -229 261 258 0 0 chr3 45820126 45820188 -172216970 + Zaphod DNA AcHobo 3969 4030 -1 * 1249 57 0 0 chr3 45820454 45820612 -172216546 + L1PA5 LINE L1 5997 6154 0 604 253 103 62 chr3 45820658 45820950 -172216208 - MER102b DNA MER1_type 0 341 38 311 284 87 102 chr3 45821106 45821441 -172215717 + L2 LINE L2 2943 3272 0 21 0 0 0 chr3 45821730 45821751 -172215407 + AT_rich Low_complexity Low_complexity 1 21 0 1891 120 25 0 chr3 45822470 45822744 -172214414 + AluSx SINE Alu 1 281 -31 267 313 52 43 chr3 45822897 45823012 -172214146 - MLT1L LTR MaLR -7 608 493 331 301 59 20 chr3 45823123 45823276 -172213882 + HAL1 LINE L1 752 910 -1597 1284 90 11 0 chr3 45823317 45823506 -172213652 + AluSq SINE Alu 121 311 -2 1759 175 3 0 chr3 45823546 45823855 -172213303 + AluJb SINE Alu 3 312 0 1542 164 37 129 chr3 45823916 45824246 -172212912 + MLT1A1 LTR MaLR 1 289 -76 1972 127 3 0 chr3 45824246 45824529 -172212629 - AluSx SINE Alu -28 284 1 1542 164 37 129 chr3 45824529 45824600 -172212558 + MLT1A1 LTR MaLR 289 365 0 1924 145 0 16 chr3 45824603 45824786 -172212372 - AluSx SINE Alu 0 312 128 258 32 0 0 chr3 45824786 45824817 -172212341 + (TA)n Simple_repeat Simple_repeat 2 32 0 2148 108 3 0 chr3 45824817 45825118 -172212040 - AluSp SINE Alu -11 302 1 1924 145 0 16 chr3 45825118 45825255 -172211903 - AluSx SINE Alu -182 130 1 25 0 0 0 chr3 45825259 45825284 -172211874 + AT_rich Low_complexity Low_complexity 1 25 0 2056 96 0 11 chr3 45825284 45825604 -172211554 + AluSc SINE Alu 1 317 0 247 31 0 0 chr3 45825614 45825646 -172211512 - L1MB5 LINE L1 -11 6163 6132 1860 149 0 7 chr3 45825646 45825948 -172211210 - AluSx SINE Alu -6 306 7 180 0 0 0 chr3 45825958 45825978 -172211180 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1663 140 59 0 chr3 45825984 45826255 -172210903 - AluSx SINE Alu -25 287 1 2099 95 3 3 chr3 45826272 45826599 -172210559 - AluSx SINE Alu 0 327 1 4611 169 30 16 chr3 45826600 45826779 -172210379 - L1MB5 LINE L1 -37 6137 5962 2100 108 7 0 chr3 45826779 45827076 -172210082 - AluSx SINE Alu -13 299 1 4611 169 30 16 chr3 45827076 45827901 -172209257 - L1MB5 LINE L1 -212 5962 5122 1748 189 65 8 chr3 45827903 45828300 -172208858 + L1MB4 LINE L1 5723 6142 -38 757 213 0 66 chr3 45828301 45828406 -172208752 + FRAM SINE Alu 1 111 -201 3635 140 30 82 chr3 45828406 45829135 -172208023 - LTR8 LTR ERV1 0 691 1 757 213 0 66 chr3 45829135 45829199 -172207959 + FRAM SINE Alu 111 160 -152 307 111 0 0 chr3 45829199 45829253 -172207905 + L1MB4 LINE L1 6127 6180 0 757 213 0 66 chr3 45829253 45829265 -172207893 + FRAM SINE Alu 160 171 -5 561 286 81 12 chr3 45829265 45829513 -172207645 + L1M4 LINE L1 2324 2588 -3558 2222 91 0 7 chr3 45829523 45829819 -172207339 + AluSg SINE Alu 1 294 -16 1179 225 10 27 chr3 45829839 45830132 -172207026 + L1ME3A LINE L1 5678 5965 -205 2262 92 7 3 chr3 45830204 45830498 -172206660 - AluSc SINE Alu -14 295 1 472 323 137 6 chr3 45830750 45831078 -172206080 + HAL1 LINE L1 1536 1906 -601 23 0 0 0 chr3 45831080 45831103 -172206055 + AT_rich Low_complexity Low_complexity 1 23 0 1509 46 6 0 chr3 45831104 45831277 -172205881 - L1PA5 LINE L1 -9 6145 5972 2214 117 7 3 chr3 45831627 45831936 -172205222 - AluSx SINE Alu -2 310 1 22 35 0 0 chr3 45832019 45832048 -172205110 + AT_rich Low_complexity Low_complexity 1 29 0 285 232 18 62 chr3 45832073 45832185 -172204973 + HAL1b LINE L1 742 848 -500 241 219 55 14 chr3 45832351 45832424 -172204734 + HAL1 LINE L1 2246 2321 -186 1445 168 0 4 chr3 45832467 45832699 -172204459 + AluJb SINE Alu 1 231 -81 223 208 0 26 chr3 45832737 45832814 -172204344 + GA-rich Low_complexity Low_complexity 3 77 0 230 250 75 50 chr3 45832840 45832960 -172204198 + HAL1 LINE L1 2356 2478 -29 421 245 22 29 chr3 45833476 45833496 -172203662 - L1MA10 LINE L1 0 6334 6315 2107 181 43 82 chr3 45833496 45833615 -172203543 - L1ME2 LINE L1 -9 6155 6033 1996 111 62 0 chr3 45833615 45833904 -172203254 + AluY SINE Alu 1 307 -4 2107 181 43 82 chr3 45833904 45834371 -172202787 - L1ME2 LINE L1 -131 6033 5592 955 146 0 7 chr3 45834400 45834551 -172202607 - L1MB3 LINE L1 -7 6176 6027 1712 164 3 31 chr3 45834553 45834688 -172202470 + AluJo SINE Alu 3 140 -165 2123 122 0 3 chr3 45834688 45834983 -172202175 + AluSx SINE Alu 1 294 -18 2429 61 3 3 chr3 45834984 45835315 -172201843 + AluY SINE Alu 1 331 0 1712 164 3 31 chr3 45835315 45835486 -172201672 + AluJo SINE Alu 139 305 0 239 209 0 0 chr3 45835491 45835534 -172201624 - L1MB3 LINE L1 -140 6043 6001 2673 160 91 17 chr3 45835606 45836136 -172201022 - L1MB3 LINE L1 -165 6018 5450 1253 209 8 16 chr3 45836895 45837153 -172200005 + MER74A LTR ERVL 1 256 -302 601 143 0 0 chr3 45837153 45837237 -172199921 - Tigger5 DNA MER2_type 0 2323 2240 1020 137 87 19 chr3 45837239 45837400 -172199758 + FAM SINE Alu 3 174 -1 1774 184 3 0 chr3 45837607 45837901 -172199257 - AluJo SINE Alu -17 295 1 644 174 132 0 chr3 45837903 45838024 -172199134 - FLAM_C SINE Alu -5 138 2 243 295 13 13 chr3 45838024 45838102 -172199056 - L2 LINE L2 -11 3302 3225 388 287 23 18 chr3 45838148 45838324 -172198834 + L1MC5 LINE L1 7072 7242 -737 853 246 78 64 chr3 45838342 45838902 -172198256 + L1MC5 LINE L1 7261 7721 -240 2467 66 0 10 chr3 45838982 45839284 -172197874 - AluSx SINE Alu -13 299 1 1619 150 53 0 chr3 45840564 45840830 -172196328 + AluJo SINE Alu 1 280 -32 198 103 0 0 chr3 45840830 45840859 -172196299 + (GGAA)n Simple_repeat Simple_repeat 4 32 0 22 0 0 0 chr3 45840859 45840881 -172196277 + AT_rich Low_complexity Low_complexity 1 22 0 1815 130 12 50 chr3 45841125 45841448 -172195710 + AluJb SINE Alu 1 311 -1 2587 51 0 0 chr3 45841493 45841789 -172195369 + AluY SINE Alu 1 296 -15 5527 159 63 29 chr3 45841789 45842276 -172194882 - L1MA4 LINE L1 -4 6296 5827 2421 58 0 61 chr3 45842276 45842603 -172194555 - AluY SINE Alu -4 307 1 5527 159 63 29 chr3 45842603 45843351 -172193807 - L1MA4 LINE L1 -473 5827 5106 2083 115 3 3 chr3 45843351 45843647 -172193511 - AluSg SINE Alu -14 296 1 5527 159 63 29 chr3 45843647 45844103 -172193055 - L1MA4 LINE L1 -1194 5106 4667 1312 171 75 86 chr3 45844103 45844395 -172192763 - AluJb SINE Alu -12 290 2 5527 159 63 29 chr3 45844395 45844742 -172192416 - L1MA4 LINE L1 -1633 4667 4189 2159 119 0 0 chr3 45844742 45845037 -172192121 - AluSx SINE Alu -15 297 3 5527 159 63 29 chr3 45845037 45845097 -172192061 - L1MA4 LINE L1 -2111 4189 4132 793 175 0 8 chr3 45845106 45845226 -172191932 - FLAM_A SINE Alu -14 119 1 365 263 40 0 chr3 45845978 45846077 -172191081 + L2 LINE L2 3205 3307 -6 670 157 50 43 chr3 45846474 45846614 -172190544 + MLT1A1 LTR MaLR 1 141 -224 363 174 122 10 chr3 45846618 45846716 -172190442 + L1MA10 LINE L1 6225 6333 -1 2023 111 42 3 chr3 45846928 45847217 -172189941 + AluSx SINE Alu 1 300 -12 418 260 45 132 chr3 45847487 45847698 -172189460 - L2 LINE L2 -411 2903 2722 2252 105 3 0 chr3 45847698 45847992 -172189166 - AluSx SINE Alu -17 295 1 418 260 45 132 chr3 45847992 45848068 -172189090 - L2 LINE L2 -592 2722 2641 1731 220 127 17 chr3 45848068 45848532 -172188626 + L1ME3 LINE L1 5641 6155 -7 476 298 38 2 chr3 45848574 45848812 -172188346 + MLT1I LTR MaLR 3 284 -125 987 245 20 0 chr3 45848816 45849020 -172188138 - MER58A DNA MER1_type -6 218 11 1669 207 0 3 chr3 45849585 45849889 -172187269 + AluSx SINE Alu 2 304 -8 37 0 0 0 chr3 45850509 45850546 -172186612 + AT_rich Low_complexity Low_complexity 1 37 0 650 287 119 77 chr3 45850950 45851211 -172185947 - L2 LINE L2 0 3272 3001 346 278 148 31 chr3 45851248 45851410 -172185748 - L2 LINE L2 -580 2734 2554 336 272 172 26 chr3 45851410 45851642 -172185516 - L2 LINE L2 -875 2439 2174 22 0 0 0 chr3 45851987 45852009 -172185149 + AT_rich Low_complexity Low_complexity 1 22 0 246 62 0 0 chr3 45852060 45852092 -172185066 + (T)n Simple_repeat Simple_repeat 1 32 0 471 246 97 40 chr3 45852737 45852912 -172184246 - MER20B DNA MER1_type -598 185 1 2175 110 3 10 chr3 45857886 45858195 -172178963 - AluSx SINE Alu -4 308 2 1097 67 0 15 chr3 45858197 45858331 -172178827 - AluY SINE Alu -179 132 1 2144 124 0 0 chr3 45858454 45858753 -172178405 - AluSx SINE Alu -13 299 1 2386 93 3 10 chr3 45858897 45859208 -172177950 - AluSp SINE Alu -4 309 1 1683 272 158 8 chr3 45859916 45860875 -172176283 - L2 LINE L2 -11 3302 2196 2513 63 10 0 chr3 45860880 45861182 -172175976 + AluSp SINE Alu 5 309 -4 4301 144 68 7 chr3 45861193 45861944 -172175214 + L1MB3 LINE L1 5380 6176 -7 * 7541 26 7 3 chr3 45861943 45862825 -172174333 - L1PA4 LINE L1 0 6155 5271 1605 193 37 3 chr3 45862836 45863131 -172174027 - AluJo SINE Alu -7 305 1 779 207 67 5 chr3 45863176 45863369 -172173789 - L2 LINE L2 -1107 2207 2003 905 153 0 7 chr3 45863395 45863532 -172173626 + AluJb SINE Alu 1 136 -176 2023 138 0 14 chr3 45863533 45863822 -172173336 + AluSx SINE Alu 1 285 -27 715 90 0 20 chr3 45863822 45863922 -172173236 + AluSg/x SINE Alu 213 310 0 1278 219 116 41 chr3 45864347 45864832 -172172326 + L1MC5 LINE L1 7243 7763 -198 342 271 119 57 chr3 45864945 45865038 -172172120 - L1ME LINE L1 -303 5818 5732 2171 134 7 0 chr3 45865038 45865345 -172171813 - AluSx SINE Alu -3 309 1 342 271 119 57 chr3 45865345 45865461 -172171697 - L1ME LINE L1 -389 5732 5596 917 150 12 40 chr3 45865461 45865634 -172171524 - MLT1D LTR MaLR 0 505 338 267 287 15 73 chr3 45865652 45865788 -172171370 + HAL1 LINE L1 2380 2507 0 606 235 163 27 chr3 45866083 45866304 -172170854 - MIR SINE MIR -10 252 2 2218 110 3 3 chr3 45866438 45866738 -172170420 - AluSx SINE Alu -12 300 1 180 295 74 32 chr3 45867739 45867834 -172169324 + MIR SINE MIR 158 256 -6 1314 161 28 14 chr3 45868243 45868460 -172168698 + AluJo SINE Alu 38 257 -55 2538 61 3 13 chr3 45869107 45869419 -172167739 - AluY SINE Alu -2 309 1 240 257 29 0 chr3 45869430 45869500 -172167658 + L2 LINE L2 3241 3312 -1 2219 94 35 0 chr3 45869614 45869901 -172167257 + AluSq SINE Alu 1 297 -16 475 288 14 20 chr3 45870391 45870537 -172166621 + MIR3 SINE MIR 2 146 -62 2342 97 3 3 chr3 45870835 45871146 -172166012 + AluSp SINE Alu 1 311 -2 2261 119 0 0 chr3 45871232 45871527 -172165631 - AluSx SINE Alu -17 295 1 243 352 106 7 chr3 45871557 45871699 -172165459 + L2 LINE L2 3117 3272 0 273 302 12 0 chr3 45872485 45872571 -172164587 - MLT1K LTR MaLR -490 98 12 1014 144 0 0 chr3 45872710 45872890 -172164268 + (TA)n Simple_repeat Simple_repeat 1 180 0 2237 84 3 24 chr3 45872896 45873194 -172163964 - AluSq SINE Alu -21 292 1 2333 103 3 3 chr3 45873209 45873520 -172163638 - AluSp SINE Alu -2 311 1 2250 91 3 36 chr3 45873628 45873936 -172163222 - AluSx SINE Alu -14 298 1 2404 90 0 10 chr3 45874310 45874622 -172162536 + AluSq SINE Alu 1 309 -4 324 290 60 30 chr3 45875518 45875618 -172161540 - L2 LINE L2 -1 3271 3169 2504 74 0 3 chr3 45875986 45876295 -172160863 - AluY SINE Alu -3 308 1 614 320 59 77 chr3 45876624 45876999 -172160159 - L2 LINE L2 -7 3265 2898 228 306 28 28 chr3 45877190 45877262 -172159896 + L2 LINE L2 3234 3305 -8 456 123 0 0 chr3 45877263 45877336 -172159822 + (TGGG)n Simple_repeat Simple_repeat 3 75 0 189 0 0 0 chr3 45879466 45879487 -172157671 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 225 276 0 0 chr3 45880861 45880919 -172156239 - L2 LINE L2 0 3272 3215 2408 84 0 3 chr3 45881075 45881373 -172155785 + AluSg SINE Alu 1 297 -13 2196 118 3 0 chr3 45881692 45881988 -172155170 - AluSx SINE Alu -15 297 1 500 164 101 63 chr3 45882078 45882237 -172154921 - LTR41 LTR ERVL -7 766 602 485 215 236 7 chr3 45882443 45882587 -172154571 - LTR41 LTR ERVL -596 177 1 301 197 33 0 chr3 45882679 45882740 -172154418 - MIR SINE MIR -70 138 76 2340 83 0 0 chr3 45882818 45883108 -172154050 - AluSc SINE Alu -19 290 1 641 275 34 0 chr3 45883119 45883297 -172153861 - MIR SINE MIR -73 189 6 244 282 82 0 chr3 45883786 45883871 -172153287 + L3 LINE CR1 1377 1468 -109 339 294 10 10 chr3 45884110 45884212 -172152946 + MIR3 SINE MIR 98 199 -9 350 305 56 60 chr3 45884968 45885217 -172151941 - L2 LINE L2 -145 3127 2880 655 211 42 18 chr3 45885221 45885387 -172151771 + MER5B DNA MER1_type 1 170 -8 230 306 24 12 chr3 45885512 45885597 -172151561 - L2 LINE L2 -586 2728 2643 4233 168 42 68 chr3 45886247 45887169 -172149989 - MER21A LTR ERV1 -23 908 11 228 259 17 0 chr3 45887178 45887236 -172149922 + (TATATG)n Simple_repeat Simple_repeat 6 64 0 277 276 43 9 chr3 45887352 45887468 -172149690 - L1MC4 LINE L1 -600 7442 7323 670 261 32 24 chr3 45887503 45887756 -172149402 - L1MC5 LINE L1 -744 7217 6963 182 139 47 0 chr3 45887757 45887800 -172149358 + CT-rich Low_complexity Low_complexity 6 50 0 1366 239 9 12 chr3 45887864 45888199 -172148959 - L1MC4 LINE L1 -1014 7028 6695 1239 121 84 5 chr3 45888201 45888416 -172148742 + L1MB3 LINE L1 5952 6183 0 225 0 0 0 chr3 45888670 45888695 -172148463 + (TA)n Simple_repeat Simple_repeat 1 25 0 180 0 0 0 chr3 45888695 45888715 -172148443 + (T)n Simple_repeat Simple_repeat 1 20 0 2367 92 3 0 chr3 45889561 45889865 -172147293 + AluSq SINE Alu 1 305 -8 261 0 0 0 chr3 45889926 45889955 -172147203 + (TAA)n Simple_repeat Simple_repeat 2 30 0 180 308 75 17 chr3 45889989 45890109 -172147049 - MIR SINE MIR -53 209 83 196 225 0 0 chr3 45890120 45890160 -172146998 + MIR SINE MIR 69 108 -100 426 164 82 0 chr3 45890212 45890285 -172146873 + AluJ/FLAM SINE Alu 1 79 -233 275 0 29 0 chr3 45890285 45890320 -172146838 + (CA)n Simple_repeat Simple_repeat 2 37 0 1156 136 0 12 chr3 45890320 45890489 -172146669 + AluJb SINE Alu 135 301 -11 203 282 98 81 chr3 45890504 45890678 -172146480 - MIR SINE MIR 0 262 86 * 226 374 43 0 chr3 45890636 45890751 -172146407 + L2 LINE L2 2669 2788 -526 593 131 0 0 chr3 45890900 45890984 -172146174 + AluS SINE Alu 6 89 -224 255 218 74 113 chr3 45890986 45891161 -172145997 + L2 LINE L2 3027 3192 -121 2237 113 0 0 chr3 45891161 45891461 -172145697 + AluSx SINE Alu 4 303 -9 255 218 74 113 chr3 45891461 45891514 -172145644 + L2 LINE L2 3192 3246 -67 207 156 0 0 chr3 45891537 45891569 -172145589 + (TGGA)n Simple_repeat Simple_repeat 3 34 0 378 255 112 32 chr3 45892374 45892562 -172144596 + MIR SINE MIR 20 222 -40 1735 160 52 3 chr3 45892913 45893200 -172143958 - AluJb SINE Alu -11 301 1 2204 99 31 0 chr3 45893360 45893654 -172143504 + AluY SINE Alu 1 303 -8 296 313 52 0 chr3 45895070 45895166 -172141992 + L2 LINE L2 3172 3272 0 275 303 9 9 chr3 45896700 45896809 -172140349 + (TA)n Simple_repeat Simple_repeat 1 109 0 335 266 112 64 chr3 45897033 45897521 -172139637 - L1ME3A LINE L1 -219 5951 5365 1911 151 0 0 chr3 45897521 45897792 -172139366 + AluSx SINE Alu 1 271 -41 335 266 112 64 chr3 45897792 45898140 -172139018 - L1ME3A LINE L1 -805 5365 5035 12930 122 43 77 chr3 45898170 45898833 -172138325 + Tigger1 DNA MER2_type 33 717 -1701 2022 127 3 0 chr3 45898833 45899117 -172138041 + AluSx SINE Alu 21 305 -7 12930 122 43 77 chr3 45899117 45900718 -172136440 + Tigger1 DNA MER2_type 717 2209 -209 2055 146 0 7 chr3 45900718 45901027 -172136131 - AluSx SINE Alu -5 307 1 12930 122 43 77 chr3 45901027 45901231 -172135927 + Tigger1 DNA MER2_type 2209 2418 0 1834 143 49 23 chr3 45901370 45901678 -172135480 - MLT1A1 LTR MaLR -48 317 2 277 330 0 9 chr3 45901727 45901842 -172135316 - HAL1 LINE L1 -904 1603 1490 984 279 104 77 chr3 45901972 45903130 -172134028 - L1MEd LINE L1 -4871 1248 60 396 274 26 52 chr3 45903460 45903613 -172133545 + MIR SINE MIR 8 156 -106 261 0 0 0 chr3 45903627 45903656 -172133502 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 406 310 33 16 chr3 45904019 45904203 -172132955 - MER117 DNA MER1_type -9 188 2 226 292 108 23 chr3 45904547 45904677 -172132481 + MIR SINE MIR 8 148 -114 2189 110 10 0 chr3 45905664 45905954 -172131204 + AluSx SINE Alu 1 293 -19 330 150 50 0 chr3 45906185 45906245 -172130913 - L1M4 LINE L1 -1521 4625 4563 7308 195 48 42 chr3 45906253 45906315 -172130843 - L1M4 LINE L1 -1712 4434 4374 2331 96 0 22 chr3 45906315 45906627 -172130531 - AluSx SINE Alu -7 305 1 1365 163 109 42 chr3 45906632 45906915 -172130243 - AluJo SINE Alu -10 302 1 7308 195 48 42 chr3 45906915 45907120 -172130038 - L1M4 LINE L1 -1775 4371 4169 2221 88 3 7 chr3 45907120 45907427 -172129731 - AluSq SINE Alu 0 306 1 7308 195 48 42 chr3 45907427 45907504 -172129654 - L1M4 LINE L1 -1977 4169 4094 1762 166 0 0 chr3 45907504 45907769 -172129389 + AluSx SINE Alu 1 265 -47 7308 195 48 42 chr3 45907769 45908784 -172128374 - L1M4 LINE L1 -2052 4094 3087 2231 93 26 23 chr3 45908784 45909094 -172128064 - AluSx SINE Alu -1 311 1 7308 195 48 42 chr3 45909094 45909662 -172127496 - L1M4 LINE L1 -3059 3087 2524 282 56 0 0 chr3 45909662 45909698 -172127460 + (TA)n Simple_repeat Simple_repeat 2 37 0 2436 72 10 0 chr3 45909698 45909988 -172127170 - AluY SINE Alu -18 293 1 7308 195 48 42 chr3 45909988 45910072 -172127086 - L1M4 LINE L1 -3621 2525 2397 233 133 204 51 chr3 45910047 45910145 -172127013 + L1MEc LINE L1 1854 1966 -4430 * 2134 114 10 7 chr3 45910819 45911118 -172126040 + AluSx SINE Alu 1 300 -12 933 195 12 0 chr3 45913230 45913394 -172123764 + FRAM SINE Alu 1 166 0 2301 86 3 16 chr3 45914130 45914434 -172122724 - AluSq SINE Alu -12 301 2 2046 128 0 10 chr3 45915045 45915342 -172121816 + AluSx SINE Alu 1 294 -18 2326 113 0 0 chr3 45915344 45915645 -172121513 + AluSx SINE Alu 1 301 -11 23 33 0 0 chr3 45916356 45916386 -172120772 + AT_rich Low_complexity Low_complexity 1 30 0 2329 71 0 30 chr3 45918368 45918665 -172118493 + AluSc SINE Alu 1 288 -21 2305 70 0 0 chr3 45919538 45919810 -172117348 - AluY SINE Alu -11 300 29 195 315 54 45 chr3 45920422 45920533 -172116625 + L2 LINE L2 2614 2725 -589 781 200 7 0 chr3 45920611 45920751 -172116407 - FLAM_C SINE Alu -1 142 2 2193 121 0 7 chr3 45921477 45921782 -172115376 + AluSx SINE Alu 1 303 -9 258 259 12 12 chr3 45922104 45922185 -172114973 - L2 LINE L2 -3 3310 3230 747 188 8 8 chr3 45922316 45922449 -172114709 + FLAM_A SINE Alu 1 133 0 2342 96 0 0 chr3 45922592 45922885 -172114273 + AluSc SINE Alu 1 293 -16 1353 244 139 37 chr3 45923045 45923376 -172113782 + L2 LINE L2 35 331 -2983 2126 102 21 0 chr3 45923376 45923688 -172113470 - AluSx SINE Alu 0 318 1 1353 244 139 37 chr3 45923688 45924001 -172113157 + L2 LINE L2 331 747 -2567 1828 136 18 0 chr3 45924001 45924281 -172112877 + MSTB LTR MaLR 4 288 -138 736 75 0 0 chr3 45924283 45924377 -172112781 + AluS SINE Alu 2 95 -218 772 97 0 182 chr3 45924377 45924480 -172112678 + MSTB LTR MaLR 283 343 -83 1931 113 72 10 chr3 45924480 45924772 -172112386 - AluSx SINE Alu -2 310 1 772 97 0 182 chr3 45924772 45924844 -172112314 + MSTB LTR MaLR 343 426 0 1083 281 77 23 chr3 45924844 45925274 -172111884 + L2 LINE L2 743 1195 -2119 381 209 123 61 chr3 45925291 45925454 -172111704 + L2 LINE L2 3138 3310 -3 2683 256 91 35 chr3 45925454 45926639 -172110519 + HAL1 LINE L1 1231 2481 -26 2024 102 48 30 chr3 45927395 45927690 -172109468 + AluSx SINE Alu 1 300 -12 21 36 0 0 chr3 45928184 45928212 -172108946 + AT_rich Low_complexity Low_complexity 1 28 0 233 276 17 0 chr3 45930165 45930223 -172106935 + MIR SINE MIR 113 171 -91 561 266 56 52 chr3 45930730 45930963 -172106195 - MIR SINE MIR -1 261 28 3649 124 74 17 chr3 45932170 45932821 -172104337 + L1MB3 LINE L1 5489 6176 -7 1425 207 34 20 chr3 45932829 45933187 -172103971 + L1MD1 LINE L1 5813 6175 -67 1098 202 47 28 chr3 45933193 45933446 -172103712 - AluJb SINE Alu -6 306 49 247 338 110 15 chr3 45933832 45933968 -172103190 + L2 LINE L2 3124 3272 0 733 205 13 8 chr3 45934145 45934341 -172102817 + MLT1J LTR MaLR 5 163 -287 604 118 7 37 chr3 45934520 45934656 -172102502 + (TTTC)n Simple_repeat Simple_repeat 4 135 0 1242 185 34 14 chr3 45934672 45934964 -172102194 - L1MB3 LINE L1 -3 6180 5883 22 0 0 0 chr3 45934967 45934989 -172102169 + AT_rich Low_complexity Low_complexity 1 22 0 418 158 0 13 chr3 45934991 45935067 -172102091 - FLAM_A SINE Alu -21 121 47 2142 110 10 10 chr3 45935090 45935390 -172101768 - AluSc SINE Alu -9 300 1 468 206 21 10 chr3 45935776 45935873 -172101285 - AluJ/FLAM SINE Alu -210 102 5 419 288 31 31 chr3 45936452 45936612 -172100546 + MIR3 SINE MIR 9 168 -40 1950 137 0 0 chr3 45937099 45937370 -172099788 + AluSx SINE Alu 7 277 -35 1108 267 3 3 chr3 45937628 45937928 -172099230 - AluSx SINE Alu -2 300 1 574 304 92 17 chr3 45938946 45939151 -172098007 + MIR SINE MIR 1 228 -34 2190 149 27 5 chr3 45939151 45939559 -172097599 + L1MB5 LINE L1 5746 6162 -12 574 304 92 17 chr3 45939559 45939593 -172097565 + MIR SINE MIR 228 258 -4 1699 226 0 0 chr3 45940809 45941119 -172096039 + AluJb SINE Alu 3 312 0 263 179 0 30 chr3 45941120 45941187 -172095971 + GA-rich Low_complexity Low_complexity 2 66 0 712 97 8 214 chr3 45941295 45941533 -172095625 - MER53 DNA DNA 0 189 1 942 215 68 11 chr3 45941695 45941960 -172095198 + MLT1A2 LTR MaLR 1 280 -94 235 204 0 0 chr3 45942155 45942204 -172094954 + Alu SINE Alu 239 287 -13 2040 114 7 0 chr3 45942213 45942517 -172094641 + AluSx SINE Alu 1 306 0 1398 178 26 26 chr3 45942552 45942894 -172094264 - MLT1A1 LTR MaLR -5 360 19 873 121 16 0 chr3 45943271 45943395 -172093763 + AluSg/x SINE Alu 174 299 -13 390 303 56 0 chr3 45943396 45943574 -172093584 + L1MB5 LINE L1 5950 6137 -37 2077 113 21 0 chr3 45943577 45943861 -172093297 + AluSx SINE Alu 3 292 -20 1268 177 55 37 chr3 45944350 45944621 -172092537 - AluJo SINE Alu -23 289 14 2472 90 0 3 chr3 45945340 45945651 -172091507 + AluSx SINE Alu 1 310 -2 27 49 0 0 chr3 45946500 45946541 -172090617 + AT_rich Low_complexity Low_complexity 1 41 0 790 282 68 35 chr3 45948455 45949188 -172087970 + L1MC5 LINE L1 4257 5013 -1133 1787 169 3 13 chr3 45949363 45949676 -172087482 + AluJb SINE Alu 1 310 -2 2501 73 3 6 chr3 45949706 45950019 -172087139 + AluSp SINE Alu 1 312 -1 971 237 120 87 chr3 45950034 45950861 -172086297 + L1MC5 LINE L1 5313 6112 -1696 2255 148 30 16 chr3 45950861 45951293 -172085865 + L1MB2 LINE L1 5730 6167 -4 971 237 120 87 chr3 45951293 45952158 -172085000 + L1MC5 LINE L1 6112 6924 -884 * 4166 165 37 21 chr3 45952148 45952582 -172084576 + L1MB8 LINE L1 5216 5642 -536 798 155 31 0 chr3 45952582 45952711 -172084447 + FLAM_C SINE Alu 1 133 0 4166 165 37 21 chr3 45952711 45953227 -172083931 + L1MB8 LINE L1 5642 6177 -1 2137 86 18 0 chr3 45953239 45953575 -172083583 + AluSp SINE Alu 1 341 0 1243 219 70 34 chr3 45953585 45954115 -172083043 + L1MC5 LINE L1 7154 7702 -259 1097 205 177 12 chr3 45954123 45954377 -172082781 + AluJo SINE Alu 1 296 -16 23 0 0 0 chr3 45954377 45954400 -172082758 + AT_rich Low_complexity Low_complexity 1 23 0 1957 129 19 29 chr3 45954723 45955033 -172082125 + AluJb SINE Alu 1 307 -5 1938 131 11 50 chr3 45955488 45955847 -172081311 - L1MC1 LINE L1 -19 6314 5970 24 0 0 0 chr3 45956568 45956592 -172080566 + AT_rich Low_complexity Low_complexity 1 24 0 1743 170 7 16 chr3 45957502 45957808 -172079350 + AluJb SINE Alu 1 303 -9 3593 159 43 26 chr3 45958051 45958349 -172078809 + L1MB8 LINE L1 4799 5091 -1087 2102 127 0 35 chr3 45958349 45958665 -172078493 + AluSx SINE Alu 1 305 -7 3593 159 43 26 chr3 45958665 45958707 -172078451 + L1MB8 LINE L1 5091 5131 -1047 2220 101 0 7 chr3 45958707 45959003 -172078155 - AluSg SINE Alu -16 294 1 3593 159 43 26 chr3 45959003 45959959 -172077199 + L1MB8 LINE L1 5131 6166 -12 1725 170 42 3 chr3 45959982 45960271 -172076887 - AluJb SINE Alu -12 300 1 2206 113 0 3 chr3 45960711 45961011 -172076147 - AluSx SINE Alu -13 299 1 786 203 33 16 chr3 45961031 45961213 -172075945 + MER5A DNA MER1_type 5 189 0 837 139 16 0 chr3 45961516 45961645 -172075513 + FLAM_C SINE Alu 1 131 -2 1600 174 54 20 chr3 45961652 45961950 -172075208 + AluJo SINE Alu 1 308 -4 26 50 0 0 chr3 45962267 45962307 -172074851 + AT_rich Low_complexity Low_complexity 1 40 0 205 211 0 0 chr3 45962411 45962449 -172074709 + (TA)n Simple_repeat Simple_repeat 1 38 0 2135 106 0 3 chr3 45963336 45963651 -172073507 - AluSx SINE Alu 0 314 1 991 133 0 0 chr3 45964215 45964358 -172072800 + FLAM_C SINE Alu 1 143 0 32 75 0 0 chr3 45964956 45965023 -172072135 + AT_rich Low_complexity Low_complexity 1 67 0 21 0 0 0 chr3 45965102 45965123 -172072035 + AT_rich Low_complexity Low_complexity 1 21 0 208 336 164 19 chr3 45965711 45965815 -172071343 + L2 LINE L2 3133 3251 -21 2138 93 0 4 chr3 45965963 45966243 -172070915 - AluSg SINE Alu -15 295 17 700 120 0 0 chr3 45966256 45966356 -172070802 - HY3 scRNA scRNA -1 100 1 205 329 82 49 chr3 45966356 45966721 -172070437 + L2 LINE L2 1463 1839 -1475 423 331 86 74 chr3 45966760 45967252 -172069906 + L2 LINE L2 2679 3179 -93 23 0 0 0 chr3 45967359 45967382 -172069776 + AT_rich Low_complexity Low_complexity 1 23 0 1459 122 49 76 chr3 45968595 45968751 -172068407 + MER33 DNA MER1_type 1 160 -2425 1922 142 6 41 chr3 45968751 45969068 -172068090 - AluSx SINE Alu -6 306 1 1459 122 49 76 chr3 45969068 45969239 -172067919 + MER33 DNA MER1_type 160 319 -5 577 219 152 17 chr3 45970507 45970685 -172066473 + L2 LINE L2 3112 3313 0 239 289 0 35 chr3 45970709 45970823 -172066335 - L1MC/D LINE L1 -1976 5832 5723 276 319 53 0 chr3 45970829 45970923 -172066235 - MIR3 SINE MIR -29 179 81 662 48 0 0 chr3 45971401 45971485 -172065673 - L1PA5 LINE L1 -2 6152 6069 2328 96 0 16 chr3 45971501 45971814 -172065344 - AluSx SINE Alu -4 308 1 23 33 0 0 chr3 45972517 45972547 -172064611 + AT_rich Low_complexity Low_complexity 1 30 0 878 130 0 22 chr3 45973318 45973456 -172063702 + FRAM SINE Alu 19 153 -23 319 315 0 0 chr3 45973462 45973551 -172063607 + L1MC4 LINE L1 6615 6703 -1339 313 322 0 0 chr3 45973475 45973565 -172063593 - L1MC4 LINE L1 -1339 6703 6614 * 2254 112 0 3 chr3 45974197 45974500 -172062658 + AluSg SINE Alu 1 302 -8 1913 186 0 0 chr3 45974504 45974815 -172062343 + AluJo SINE Alu 1 311 -1 556 202 63 48 chr3 45975265 45975517 -172061641 + L1MC5 LINE L1 7616 7871 -90 2234 121 0 10 chr3 45975617 45975923 -172061235 - AluSx SINE Alu -9 303 1 918 301 84 25 chr3 45976649 45977055 -172060103 + L2 LINE L2 2876 3305 -8 250 326 54 8 chr3 45977274 45977403 -172059755 - MIR SINE MIR -7 255 121 1024 170 0 12 chr3 45977964 45978129 -172059029 - FRAM SINE Alu -2 164 2 2156 115 0 0 chr3 45978904 45979192 -172057966 + AluSx SINE Alu 1 288 -24 826 269 9 9 chr3 45979647 45979866 -172057292 + AluJo SINE Alu 1 219 -93 348 310 107 59 chr3 45979904 45980028 -172057130 + L1MC4a LINE L1 5640 5757 -2051 2293 82 14 0 chr3 45980028 45980320 -172056838 - AluSp SINE Alu -15 298 3 348 310 107 59 chr3 45980320 45980485 -172056673 + L1MC4a LINE L1 5757 5943 -1865 23 33 0 0 chr3 45980678 45980708 -172056450 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr3 45980936 45980964 -172056194 + AT_rich Low_complexity Low_complexity 1 28 0 269 272 130 0 chr3 45981885 45981977 -172055181 + MARNA DNA Mariner 421 524 -62 188 83 0 28 chr3 45982832 45982868 -172054290 + (CAAAAA)n Simple_repeat Simple_repeat 6 40 0 224 215 0 63 chr3 45984848 45984927 -172052231 + C-rich Low_complexity Low_complexity 1 74 0 419 113 0 0 chr3 45985210 45985272 -172051886 + AluS SINE Alu 1 62 -248 1566 93 9 0 chr3 45985272 45985486 -172051672 + AluSg/x SINE Alu 97 312 0 1493 174 54 50 chr3 45986425 45986723 -172050435 - AluJo SINE Alu -13 299 1 1854 168 0 26 chr3 45987622 45987931 -172049227 + AluJo SINE Alu 1 301 -11 25 0 0 0 chr3 45988315 45988340 -172048818 + AT_rich Low_complexity Low_complexity 1 25 0 529 203 63 63 chr3 45989205 45989257 -172047901 - MER112 DNA MER1_type -24 236 185 1670 179 0 40 chr3 45989257 45989558 -172047600 - AluJo SINE Alu -23 289 1 529 203 63 63 chr3 45989558 45989663 -172047495 - MER112 DNA MER1_type -74 186 79 21 57 0 0 chr3 45990703 45990738 -172046420 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr3 45991079 45991112 -172046046 + AT_rich Low_complexity Low_complexity 1 33 0 1170 153 56 60 chr3 45991235 45991484 -172045674 - AluJb SINE Alu -64 248 1 2074 122 3 13 chr3 45992780 45993083 -172044075 - AluSx SINE Alu -12 300 1 2291 99 10 0 chr3 45993224 45993526 -172043632 - AluSp SINE Alu -8 305 1 235 128 0 0 chr3 45993867 45993914 -172043244 + L1PB3 LINE L1 6108 6154 0 396 0 0 0 chr3 45994963 45995007 -172042151 + (TG)n Simple_repeat Simple_repeat 2 45 0 3075 38 3 0 chr3 45995039 45995410 -172041748 - L1PA5 LINE L1 -1 6153 5782 1881 136 11 11 chr3 45996290 45996608 -172040550 - AluSx SINE Alu 0 318 1 26 30 0 0 chr3 45997001 45997034 -172040124 + AT_rich Low_complexity Low_complexity 1 33 0 916 161 94 21 chr3 45997213 45997405 -172039753 + MER3 DNA MER1_type 2 207 -2 446 226 12 0 chr3 45997665 45997749 -172039409 - MIR3 SINE MIR -23 185 101 259 302 214 6 chr3 45998602 45998761 -172038397 + MIR SINE MIR 53 244 -18 198 150 0 0 chr3 45999057 45999097 -172038061 + (T)n Simple_repeat Simple_repeat 1 40 0 2251 103 0 3 chr3 45999127 45999446 -172037712 - AluSx SINE Alu 0 312 3 2485 84 0 0 chr3 45999695 46000006 -172037152 + AluSq SINE Alu 1 311 -2 654 175 10 0 chr3 46001026 46001161 -172035997 - FRAM SINE Alu 0 178 43 260 312 72 63 chr3 46002739 46002775 -172034383 + L2 LINE L2 2552 2586 -728 1382 119 26 56 chr3 46002775 46002829 -172034329 - L1MB7 LINE L1 -19 6165 6111 1952 171 0 0 chr3 46002829 46003128 -172034030 + AluSx SINE Alu 1 299 -13 1382 119 26 56 chr3 46003128 46003342 -172033816 - L1MB7 LINE L1 -73 6111 5905 260 312 72 63 chr3 46003342 46003542 -172033616 + L2 LINE L2 2586 2790 -524 3870 124 120 9 chr3 46003628 46004287 -172032871 + MER44D DNA MER2_type 1 604 -1 279 313 192 20 chr3 46004793 46004991 -172032167 - L2 LINE L2 -8 3264 3033 21 0 0 0 chr3 46005859 46005880 -172031278 + AT_rich Low_complexity Low_complexity 1 21 0 2203 129 0 3 chr3 46006060 46006371 -172030787 + AluSx SINE Alu 1 310 -2 2824 174 29 4 chr3 46006379 46006938 -172030220 + L1MB4 LINE L1 5601 6173 -7 1826 96 0 0 chr3 46007088 46007317 -172029841 + AluSg/x SINE Alu 69 297 -13 2214 108 3 0 chr3 46008297 46008594 -172028564 + AluSg SINE Alu 1 298 -12 4380 147 36 15 chr3 46008713 46009570 -172027588 + L1MB7 LINE L1 5291 6165 -19 27 73 0 0 chr3 46009618 46009673 -172027485 + AT_rich Low_complexity Low_complexity 1 55 0 308 193 281 0 chr3 46009703 46009817 -172027341 + MER103 DNA DNA 14 159 -7 340 267 9 19 chr3 46010666 46010771 -172026387 + MLT1K LTR MaLR 479 582 -6 2290 95 0 7 chr3 46011001 46011305 -172025853 + AluSx SINE Alu 1 302 -10 456 71 0 0 chr3 46011814 46011870 -172025288 - AluS SINE Alu -246 67 12 1738 159 44 10 chr3 46012254 46012550 -172024608 + AluJb SINE Alu 3 308 -4 1311 176 9 5 chr3 46013115 46013337 -172023821 + AluJb SINE Alu 83 305 -7 1725 181 0 7 chr3 46015019 46015311 -172021847 - AluJb SINE Alu -20 292 3 743 200 0 0 chr3 46015336 46015461 -172021697 + FLAM_C SINE Alu 1 125 -18 28 0 0 0 chr3 46015461 46015489 -172021669 + AT_rich Low_complexity Low_complexity 1 28 0 2399 83 0 3 chr3 46015530 46015842 -172021316 + AluY SINE Alu 1 311 0 1158 77 0 0 chr3 46015989 46016145 -172021013 - L1PA11 LINE L1 -284 5890 5735 3260 87 43 1 chr3 46016148 46016872 -172020286 + L1PA11 LINE L1 5006 5759 -409 1844 168 42 47 chr3 46017669 46018121 -172019037 + MER65C LTR ERV1 1 450 -11 21 36 0 0 chr3 46018572 46018600 -172018558 + AT_rich Low_complexity Low_complexity 1 28 0 1483 126 0 0 chr3 46018729 46018953 -172018205 + AluSg/x SINE Alu 84 307 0 2054 148 0 0 chr3 46019129 46019440 -172017718 + AluSx SINE Alu 2 312 0 231 321 0 0 chr3 46019516 46019572 -172017586 - L2 LINE L2 -40 3232 3177 2234 110 3 0 chr3 46019591 46019890 -172017268 + AluSq SINE Alu 2 301 -12 276 30 0 0 chr3 46020363 46020396 -172016762 + (A)n Simple_repeat Simple_repeat 1 33 0 2194 121 3 0 chr3 46020538 46020844 -172016314 + AluSp SINE Alu 2 308 -5 2047 155 0 0 chr3 46020850 46021153 -172016005 + AluJb SINE Alu 1 303 -9 235 277 36 0 chr3 46021184 46021267 -172015891 + GA-rich Low_complexity Low_complexity 3 88 0 2254 108 3 3 chr3 46022014 46022310 -172014848 + AluSx SINE Alu 1 296 -16 2421 180 32 6 chr3 46022664 46023197 -172013961 - L1M4 LINE L1 -971 5175 4629 2078 130 13 0 chr3 46023198 46023497 -172013661 - AluSx SINE Alu -9 303 1 195 222 0 0 chr3 46023516 46023561 -172013597 + A-rich Low_complexity Low_complexity 4 48 0 575 148 0 11 chr3 46023579 46023667 -172013491 + AluJo SINE Alu 127 213 -99 279 0 0 0 chr3 46023680 46023711 -172013447 + (A)n Simple_repeat Simple_repeat 1 31 0 236 280 120 64 chr3 46023716 46023966 -172013192 + HAL1 LINE L1 348 611 -1896 498 180 65 70 chr3 46024051 46024188 -172012970 + HAL1 LINE L1 910 1047 -1460 2329 106 3 0 chr3 46024188 46024491 -172012667 + AluSq SINE Alu 1 304 -9 498 180 65 70 chr3 46024491 46024553 -172012605 + HAL1 LINE L1 1047 1108 -1399 2168 180 36 39 chr3 46024558 46024752 -172012406 + L1MB7 LINE L1 5627 5820 -364 1787 143 19 56 chr3 46024752 46025074 -172012084 + AluSx SINE Alu 1 310 -2 2168 180 36 39 chr3 46025074 46025439 -172011719 + L1MB7 LINE L1 5820 6184 0 1552 241 81 38 chr3 46025436 46025591 -172011567 + HAL1 LINE L1 1095 1242 -1265 * 1619 136 118 21 chr3 46025591 46025870 -172011288 + AluJb SINE Alu 1 306 -6 1552 241 81 38 chr3 46025870 46026427 -172010731 + HAL1 LINE L1 1242 1838 -669 1119 238 58 42 chr3 46027024 46027385 -172009773 + MLT1J2 LTR MaLR 80 446 -4 206 200 0 0 chr3 46027746 46027781 -172009377 + (TGGA)n Simple_repeat Simple_repeat 2 36 0 451 220 78 21 chr3 46027798 46027989 -172009169 + HAL1 LINE L1 1973 2174 -333 2099 126 3 13 chr3 46028125 46028426 -172008732 + AluSx SINE Alu 1 298 -14 863 168 32 38 chr3 46028456 46028641 -172008517 + MLT1E LTR MaLR 1 184 -409 2524 74 0 0 chr3 46028643 46028953 -172008205 + AluY SINE Alu 1 310 -1 1109 105 0 61 chr3 46028953 46029134 -172008024 + MER1B DNA MER1_type 170 339 0 1374 164 68 71 chr3 46029134 46029164 -172007994 + L1MB4 LINE L1 4965 4994 -1186 2013 107 18 14 chr3 46029164 46029444 -172007714 + AluSq SINE Alu 1 281 -32 789 70 31 16 chr3 46029447 46029576 -172007582 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 1374 164 68 71 chr3 46029576 46029753 -172007405 + L1MB4 LINE L1 4996 5172 -1008 2067 83 32 7 chr3 46029753 46030069 -172007089 + AluSg SINE Alu 1 310 0 1374 164 68 71 chr3 46030069 46030272 -172006886 + L1MB4 LINE L1 5172 5369 -811 1576 154 0 93 chr3 46030272 46030434 -172006724 + AluJo SINE Alu 1 116 -196 2244 110 13 0 chr3 46030434 46030743 -172006415 + AluSp SINE Alu 1 313 0 1576 154 0 93 chr3 46030743 46030923 -172006235 + AluJo SINE Alu 116 311 -1 1374 164 68 71 chr3 46030923 46031004 -172006154 + L1MB4 LINE L1 5369 5449 -731 2369 97 0 0 chr3 46031071 46031380 -172005778 + AluSg SINE Alu 1 309 -1 1646 174 31 3 chr3 46031399 46031687 -172005471 + AluJb SINE Alu 1 296 -16 3608 147 37 34 chr3 46031696 46032378 -172004780 + L1MB4 LINE L1 5476 6162 -18 1715 187 151 46 chr3 46032378 46032478 -172004680 + MER7C DNA MER2_type 1 89 -2939 607 154 0 0 chr3 46032478 46032569 -172004589 - FAM SINE Alu -22 163 73 1715 187 151 46 chr3 46032569 46032923 -172004235 + MER7C DNA MER2_type 89 602 0 3608 147 37 34 chr3 46032923 46032942 -172004216 + L1MB4 LINE L1 6162 6179 -1 277 153 0 0 chr3 46032947 46033006 -172004152 + L1MB3 LINE L1 6125 6183 0 195 100 0 0 chr3 46033775 46033805 -172003353 + (CAT)n Simple_repeat Simple_repeat 1 30 0 1769 186 0 0 chr3 46034489 46034796 -172002362 + AluJb SINE Alu 1 307 -5 365 282 99 0 chr3 46035857 46035999 -172001159 + L1MC/D LINE L1 5624 5779 -2029 2299 74 0 20 chr3 46036608 46036907 -172000251 + AluY SINE Alu 1 293 -18 1255 167 111 0 chr3 46036918 46037152 -172000006 - AluJo SINE Alu -17 295 36 392 309 37 7 chr3 46041610 46041746 -171995412 - MIR SINE MIR -89 173 34 1651 190 28 3 chr3 46042211 46042495 -171994663 + AluJb SINE Alu 3 293 -19 459 215 108 0 chr3 46042665 46042795 -171994363 - L1MD3 LINE L1 -11 7984 7841 1808 157 13 7 chr3 46043223 46043529 -171993629 + AluJb SINE Alu 5 312 0 421 305 86 0 chr3 46044320 46044494 -171992664 - L2 LINE L2 -456 2858 2670 995 163 0 0 chr3 46044502 46044655 -171992503 + AluSg/x SINE Alu 142 294 -18 1152 148 0 44 chr3 46044678 46044861 -171992297 + AluJo SINE Alu 1 175 -137 291 316 195 5 chr3 46044861 46045051 -171992107 - L2 LINE L2 -4 3309 3084 656 221 171 22 chr3 46045228 46045415 -171991743 - L2 LINE L2 -314 2999 2760 1725 181 10 32 chr3 46045415 46045729 -171991429 - AluJo SINE Alu -5 307 1 656 221 171 22 chr3 46045729 46045816 -171991342 - L2 LINE L2 -553 2760 2687 328 265 73 7 chr3 46045901 46046037 -171991121 - L2 LINE L2 -612 2702 2558 694 160 0 24 chr3 46046652 46046777 -171990381 + FAM SINE Alu 1 47 -2 483 307 138 68 chr3 46046783 46047138 -171990020 - MLT1K LTR MaLR -181 407 28 1013 169 0 27 chr3 46048187 46048371 -171988787 + FRAM SINE Alu 1 174 -2 24 32 0 0 chr3 46048419 46048450 -171988708 + AT_rich Low_complexity Low_complexity 1 31 0 2161 118 3 0 chr3 46048477 46048774 -171988384 + AluSq SINE Alu 1 298 -15 2005 159 31 11 chr3 46048785 46049143 -171988015 + MLT1A1 LTR MaLR 1 365 0 1251 218 23 11 chr3 46049204 46049466 -171987692 + AluJo SINE Alu 22 286 -26 694 144 0 0 chr3 46049566 46049663 -171987495 + FLAM_C SINE Alu 28 124 -19 2386 66 0 3 chr3 46049761 46050077 -171987081 + AluSq SINE Alu 1 315 0 425 246 8 30 chr3 46050077 46050201 -171986957 + L1MC5 LINE L1 7030 7153 -808 * 544 244 60 86 chr3 46050179 46050205 -171986953 + L1MC5 LINE L1 7495 7520 -441 2553 69 0 3 chr3 46050205 46050509 -171986649 + AluSc SINE Alu 1 303 -6 544 244 60 86 chr3 46050509 46050698 -171986460 + L1MC5 LINE L1 7520 7712 -249 1454 193 47 13 chr3 46050698 46050999 -171986159 + AluJb SINE Alu 1 311 -1 544 244 60 86 chr3 46050999 46051126 -171986032 + L1MC5 LINE L1 7712 7829 -132 2533 59 0 3 chr3 46051126 46051429 -171985729 - AluY SINE Alu -9 302 1 544 244 60 86 chr3 46051429 46051469 -171985689 + L1MC5 LINE L1 7829 7869 -92 2226 86 16 41 chr3 46051490 46051805 -171985353 - AluSg SINE Alu -3 307 1 189 0 0 0 chr3 46051805 46051826 -171985332 + (T)n Simple_repeat Simple_repeat 1 21 0 21 36 0 0 chr3 46051855 46051883 -171985275 + AT_rich Low_complexity Low_complexity 1 28 0 199 200 225 83 chr3 46052656 46052776 -171984382 + MIR SINE MIR 65 201 -61 391 118 3 43 chr3 46053169 46053466 -171983692 + AluSx SINE Alu 1 314 0 784 171 82 0 chr3 46053466 46053612 -171983546 + AluJo/FRAM SINE Alu 137 294 -8 1017 216 103 38 chr3 46053646 46053807 -171983351 + MER58B DNA MER1_type 1 150 -2270 2408 84 33 0 chr3 46053807 46054106 -171983052 + AluSp SINE Alu 1 309 -4 2207 110 3 0 chr3 46054107 46054406 -171982752 + AluSp SINE Alu 1 300 -13 1017 216 103 38 chr3 46054406 46054561 -171982597 + MER58B DNA MER1_type 149 340 -1 2338 106 0 16 chr3 46054709 46055021 -171982137 - AluSx SINE Alu -5 307 1 746 172 37 0 chr3 46055023 46055157 -171982001 - AluSp/q SINE Alu -8 305 167 2075 122 14 0 chr3 46055216 46055504 -171981654 - AluSx SINE Alu -20 292 1 23 78 0 0 chr3 46055527 46055578 -171981580 + AT_rich Low_complexity Low_complexity 1 51 0 885 199 0 12 chr3 46056211 46056377 -171980781 - FRAM SINE Alu -15 161 1 972 225 0 108 chr3 46056465 46056514 -171980644 + L1ME LINE L1 5381 5434 -736 1954 156 23 7 chr3 46056514 46056821 -171980337 - AluJb SINE Alu 0 312 1 972 225 0 108 chr3 46056821 46056945 -171980213 + L1ME LINE L1 5434 5509 -661 2109 133 0 7 chr3 46056945 46057245 -171979913 - AluSx SINE Alu -14 298 1 972 225 0 108 chr3 46057245 46057377 -171979781 + L1ME LINE L1 5509 5654 -516 180 0 0 0 chr3 46057528 46057548 -171979610 + (A)n Simple_repeat Simple_repeat 1 20 0 1431 129 9 0 chr3 46057550 46057760 -171979398 + AluSq SINE Alu 86 297 -16 656 117 10 10 chr3 46058302 46058405 -171978753 + U13 snRNA snRNA 1 103 -1 487 214 20 0 chr3 46058681 46058779 -171978379 + LTR16A1 LTR ERVL 2 101 -356 746 203 183 5 chr3 46058849 46059051 -171978107 + LTR16A1 LTR ERVL 220 457 0 271 202 10 101 chr3 46060251 46060350 -171976808 + MER102b DNA MER1_type 250 339 -2 413 206 0 31 chr3 46061008 46061105 -171976053 + L2 LINE L2 3218 3311 -2 806 123 0 31 chr3 46061227 46061357 -171975801 - FRAM SINE Alu 0 176 51 389 70 18 0 chr3 46061377 46061434 -171975724 + (TA)n Simple_repeat Simple_repeat 1 58 0 730 161 0 0 chr3 46061435 46061547 -171975611 - FLAM_C SINE Alu -30 113 2 243 146 0 0 chr3 46062139 46062180 -171974978 + MLT1K LTR MaLR 21 61 -527 2240 112 7 7 chr3 46062180 46062484 -171974674 - AluSx SINE Alu -8 304 1 2556 43 10 0 chr3 46062562 46062866 -171974292 - AluY SINE Alu -4 307 1 2265 79 10 10 chr3 46062960 46063263 -171973895 - AluSx SINE Alu -9 303 1 185 225 50 0 chr3 46063991 46064031 -171973127 + MIR SINE MIR 46 87 -175 242 196 0 0 chr3 46064068 46064114 -171973044 + MIR SINE MIR 211 256 -6 2090 121 0 0 chr3 46064984 46065310 -171971848 - AluSx SINE Alu 0 326 1 353 243 3 10 chr3 46065345 46065456 -171971702 - MIR SINE MIR -62 146 71 1097 243 62 29 chr3 46065676 46066260 -171970898 - L2 LINE L2 -73 3240 2643 324 248 109 7 chr3 46066260 46066397 -171970761 - L2 LINE L2 -1181 2133 1983 2309 85 0 19 chr3 46066962 46067269 -171969889 + AluY SINE Alu 1 301 -10 729 150 0 17 chr3 46067283 46067403 -171969755 + LTR7 LTR ERV1 333 450 0 2276 203 84 58 chr3 46067403 46068242 -171968916 + HERVH LTR ERV1 1 805 -6908 * 5063 126 4 30 chr3 46068236 46069065 -171968093 + HERVH LTR ERV1 2189 2995 -4718 3057 126 4 0 chr3 46069044 46069504 -171967654 + HERVH LTR ERV1 3140 3601 -4112 * 3620 162 9 13 chr3 46069495 46070273 -171966885 + HERVH LTR ERV1 3809 4551 -2297 1658 134 0 4 chr3 46070264 46070526 -171966632 + HERVH LTR ERV1 5756 6016 -1697 * 3562 131 9 9 chr3 46070519 46071076 -171966082 + HERVH LTR ERV1 7157 7713 0 814 116 70 8 chr3 46071076 46071205 -171965953 + LTR7 LTR ERV1 1 137 -313 743 188 0 26 chr3 46071270 46071424 -171965734 + LTR7 LTR ERV1 301 450 0 2093 136 3 0 chr3 46071543 46071837 -171965321 - AluSx SINE Alu -17 295 1 229 311 9 68 chr3 46071876 46071938 -171965220 - L2 LINE L2 -961 2353 2289 987 228 45 5 chr3 46071938 46072140 -171965018 + MER63A DNA MER1_type 1 210 0 229 311 9 68 chr3 46072140 46072296 -171964862 - L2 LINE L2 -1025 2289 2148 2250 188 86 46 chr3 46072694 46072747 -171964411 - MLT1F LTR MaLR 0 542 493 1890 131 27 14 chr3 46072747 46073044 -171964114 + AluSx SINE Alu 1 301 -11 2250 188 86 46 chr3 46073044 46073511 -171963647 - MLT1F LTR MaLR -49 493 1 2222 113 20 0 chr3 46073927 46074229 -171962929 - AluSx SINE Alu -4 308 1 1619 161 0 38 chr3 46074412 46074679 -171962479 - AluJb SINE Alu -55 257 1 297 324 67 9 chr3 46074708 46074813 -171962345 - MIR SINE MIR -138 124 14 3693 183 41 17 chr3 46075949 46076660 -171960498 - MER44D DNA MER2_type -1 604 5 344 332 122 33 chr3 46077096 46077638 -171959520 + L2 LINE L2 1588 2177 -1137 669 108 32 0 chr3 46077728 46077821 -171959337 + U6 snRNA snRNA 1 96 -11 231 88 0 0 chr3 46077822 46077856 -171959302 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 981 110 55 0 chr3 46077858 46078003 -171959155 + AluJb SINE Alu 1 153 -159 663 250 176 0 chr3 46078381 46078569 -171958589 + AluYa8 SINE Alu 77 297 -13 282 291 101 0 chr3 46078669 46078817 -171958341 + L2 LINE L2 2739 2901 -413 1840 124 47 34 chr3 46079550 46079848 -171957310 - AluJb SINE Alu -10 302 1 1956 167 145 0 chr3 46080273 46080645 -171956513 + MSTB LTR MaLR 1 426 0 751 176 15 0 chr3 46081862 46081993 -171955165 + FLAM_A SINE Alu 1 133 0 189 193 23 125 chr3 46083001 46083089 -171954069 + MIR SINE MIR 109 187 -75 1047 226 48 16 chr3 46083178 46083430 -171953728 + MIR SINE MIR 1 260 -2 2475 97 3 11 chr3 46083717 46084066 -171953092 - L1PA10 LINE L1 -16 6152 5807 1697 118 0 4 chr3 46084166 46084394 -171952764 - AluSg SINE Alu -83 227 1 2184 129 3 7 chr3 46084539 46084849 -171952309 + AluJb SINE Alu 1 309 -3 1421 218 92 41 chr3 46085076 46085488 -171951670 - LTR16C LTR ERVL 0 491 59 1490 96 48 20 chr3 46085847 46085883 -171951275 + L1MA2 LINE L1 6044 6078 -226 2028 128 17 0 chr3 46085883 46086173 -171950985 + AluJo SINE Alu 5 299 -13 1490 96 48 20 chr3 46086173 46086386 -171950772 + L1MA2 LINE L1 6078 6300 -4 24 0 0 0 chr3 46086396 46086420 -171950738 + AT_rich Low_complexity Low_complexity 1 24 0 817 206 11 0 chr3 46086420 46086595 -171950563 + MER69 DNA AcHobo 2128 2304 -222 1958 125 6 39 chr3 46086635 46086946 -171950212 + AluJb SINE Alu 3 303 -9 630 200 75 0 chr3 46087485 46087605 -171949553 + MER3 DNA MER1_type 81 209 0 * 805 213 30 5 chr3 46087605 46087794 -171949364 + LTR16A1 LTR ERVL 264 457 0 1622 254 63 18 chr3 46087867 46088371 -171948787 - MLT1L LTR MaLR -2 613 87 786 171 0 41 chr3 46088463 46088609 -171948549 + FLAM_C SINE Alu 2 141 -2 198 304 14 14 chr3 46088660 46088729 -171948429 + MER5A DNA MER1_type 14 82 -107 252 0 0 0 chr3 46088796 46088824 -171948334 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 1958 122 54 7 chr3 46088885 46089180 -171947978 + AluSx SINE Alu 1 309 -3 1035 169 0 6 chr3 46089730 46089921 -171947237 - AluSg/x SINE Alu 0 304 115 2161 98 51 0 chr3 46089937 46090232 -171946926 - AluSg SINE Alu 0 310 1 7977 173 40 17 chr3 46090234 46091707 -171945451 - MER52A LTR ERV1 0 1755 164 2392 102 3 0 chr3 46092733 46093037 -171944121 - AluSx SINE Alu -7 305 1 2139 130 0 0 chr3 46093367 46093681 -171943477 + AluSx SINE Alu 1 314 0 370 302 90 35 chr3 46093735 46093990 -171943168 + L3 LINE CR1 677 945 -632 970 184 0 0 chr3 46094044 46094207 -171942951 - AluJb SINE Alu -13 299 137 1232 202 106 32 chr3 46094303 46094680 -171942478 + LTR16A1 LTR ERVL 28 432 -25 328 342 93 32 chr3 46094683 46094807 -171942351 + L3 LINE CR1 1148 1263 -314 1653 144 27 62 chr3 46094807 46094955 -171942203 + AluJo SINE Alu 1 137 -175 1878 173 3 0 chr3 46094955 46095259 -171941899 + AluSx SINE Alu 1 305 0 1653 144 27 62 chr3 46095259 46095401 -171941757 + AluJo SINE Alu 137 282 -30 328 342 93 32 chr3 46095401 46095586 -171941572 + L3 LINE CR1 1263 1476 -101 2317 65 0 4 chr3 46095772 46096049 -171941109 - AluY SINE Alu -35 276 1 257 154 0 19 chr3 46096303 46096355 -171940803 + LTR33A LTR ERVL 332 382 -141 233 186 0 0 chr3 46096395 46096438 -171940720 + LTR33A LTR ERVL 478 520 -3 802 168 0 0 chr3 46097960 46098161 -171938997 + FLAM_C SINE Alu 12 212 0 21 57 0 0 chr3 46098226 46098261 -171938897 + AT_rich Low_complexity Low_complexity 1 35 0 2580 56 7 3 chr3 46098886 46099190 -171937968 - AluY SINE Alu -6 305 1 307 247 12 0 chr3 46099351 46099432 -171937726 - HAL1 LINE L1 -894 1613 1532 2304 103 0 7 chr3 46099599 46099909 -171937249 - AluSg SINE Alu 0 310 3 1645 185 24 3 chr3 46099911 46100208 -171936950 - AluJb SINE Alu -9 303 1 227 146 146 0 chr3 46100209 46100264 -171936894 - MER116 DNA Mariner -17 63 1 379 212 106 7 chr3 46100266 46100407 -171936751 - L1MC4a LINE L1 -157 5964 5812 288 252 39 29 chr3 46100454 46100557 -171936601 - L1ME1 LINE L1 -15 6151 6048 300 265 62 65 chr3 46100565 46100825 -171936333 - L1ME3A LINE L1 -85 6085 5827 2263 68 7 0 chr3 46101008 46101317 -171935841 - AluY SINE Alu 0 311 1 4655 123 72 93 chr3 46101427 46102876 -171934282 + pTR5 LTR ERV1 66 2438 0 200 292 90 0 chr3 46102887 46102976 -171934182 - MIR SINE MIR -62 146 50 2520 67 0 0 chr3 46103380 46103679 -171933479 + AluY SINE Alu 1 299 -12 32 0 0 0 chr3 46103952 46103984 -171933174 + AT_rich Low_complexity Low_complexity 1 32 0 2147 112 0 0 chr3 46103984 46104260 -171932898 - AluSg SINE Alu -21 289 14 388 262 155 72 chr3 46104968 46105187 -171931971 + L1ME4a LINE L1 5391 5590 -531 2383 94 0 0 chr3 46105187 46105496 -171931662 - AluSc SINE Alu 0 309 1 388 262 155 72 chr3 46105496 46105806 -171931352 + L1ME4a LINE L1 5590 5964 -157 27 81 0 0 chr3 46105810 46105872 -171931286 + AT_rich Low_complexity Low_complexity 1 62 0 2104 118 7 0 chr3 46106268 46106572 -171930586 + AluSx SINE Alu 1 306 0 620 195 0 8 chr3 46106581 46106699 -171930459 + FLAM_C SINE Alu 1 117 -16 320 374 92 23 chr3 46106918 46107223 -171929935 - L2 LINE L2 -631 2683 2358 2201 125 0 0 chr3 46107438 46107735 -171929423 + AluSx SINE Alu 3 299 -13 207 256 98 12 chr3 46107756 46107838 -171929320 - L2 LINE L2 -39 3233 3145 1339 116 74 5 chr3 46107854 46108069 -171929089 + MER30 DNA MER1_type 1 230 0 351 200 146 0 chr3 46108182 46108292 -171928866 - MIR SINE MIR -53 209 84 2398 88 0 10 chr3 46108520 46108827 -171928331 - AluSq SINE Alu -9 304 1 228 139 0 0 chr3 46108852 46108888 -171928270 - MIR SINE MIR -226 36 1 230 250 0 0 chr3 46109765 46109813 -171927345 + (CATATA)n Simple_repeat Simple_repeat 1 48 0 2145 134 0 0 chr3 46109931 46110229 -171926929 - AluSx SINE Alu -14 298 1 183 42 0 0 chr3 46110248 46110272 -171926886 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3532 120 9 24 chr3 46110306 46110840 -171926318 - MER1A DNA MER1_type 0 527 2 446 241 65 35 chr3 46113601 46113800 -171923358 + L1ME LINE L1 5618 5822 -299 609 234 54 0 chr3 46113800 46113967 -171923191 - MIR SINE MIR -11 251 76 752 95 0 0 chr3 46114366 46114471 -171922687 - AluSq/x SINE Alu -207 106 2 499 178 168 10 chr3 46114576 46114677 -171922481 + AluJo/FLAM SINE Alu 1 117 -185 1672 90 173 12 chr3 46114677 46114932 -171922226 + AluSg1 SINE Alu 1 296 -13 1679 116 30 0 chr3 46115124 46115392 -171921766 + L1MB3 LINE L1 5892 6167 -16 23 33 0 0 chr3 46115517 46115547 -171921611 + AT_rich Low_complexity Low_complexity 1 30 0 1856 199 118 51 chr3 46116167 46116694 -171920464 - MLT1E1 LTR MaLR 0 654 93 746 179 8 0 chr3 46116760 46116883 -171920275 - FLAM_C SINE Alu -19 124 1 1053 112 42 0 chr3 46118031 46118174 -171918984 - AluSg/x SINE Alu -20 292 144 342 221 95 11 chr3 46118311 46118406 -171918752 - LTR67 LTR ERVL -7 550 448 394 343 66 12 chr3 46118537 46118703 -171918455 - LTR67 LTR ERVL -296 261 87 21 71 0 0 chr3 46118852 46118894 -171918264 + AT_rich Low_complexity Low_complexity 1 42 0 238 220 0 17 chr3 46119007 46119066 -171918092 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 610 170 15 43 chr3 46119597 46119738 -171917420 - L1MD3 LINE L1 0 7995 6190 201 108 0 0 chr3 46120270 46120307 -171916851 + (TATG)n Simple_repeat Simple_repeat 4 40 0 1500 157 13 0 chr3 46120307 46120537 -171916621 - AluJb SINE Alu -26 286 54 345 255 248 6 chr3 46120748 46120909 -171916249 - L1ME3A LINE L1 -8 6162 5963 22 0 0 0 chr3 46120927 46120949 -171916209 + AT_rich Low_complexity Low_complexity 1 22 0 1157 226 85 41 chr3 46120969 46121576 -171915582 - L1P1 LINE L1 -380 5775 5152 1575 159 83 14 chr3 46121577 46121697 -171915461 + AluJo SINE Alu 1 111 -201 180 0 0 0 chr3 46121697 46121717 -171915441 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1575 159 83 14 chr3 46121717 46121873 -171915285 + AluJo SINE Alu 111 296 -16 21 71 0 0 chr3 46122000 46122042 -171915116 + AT_rich Low_complexity Low_complexity 1 42 0 2207 100 24 0 chr3 46122351 46122642 -171914516 + AluSx SINE Alu 1 298 -14 1214 119 6 11 chr3 46122958 46123135 -171914023 + AluSg/x SINE Alu 119 294 -18 3699 117 45 18 chr3 46123135 46123678 -171913480 - L1PB2 LINE L1 -5 6146 5584 2375 103 0 22 chr3 46123678 46123997 -171913161 + AluSx SINE Alu 1 312 0 3699 117 45 18 chr3 46123997 46124053 -171913105 - L1PB2 LINE L1 -567 5584 5531 2174 119 3 0 chr3 46124211 46124504 -171912654 - AluSx SINE Alu -18 294 1 1105 59 15 0 chr3 46124693 46124858 -171912300 + AluY SINE Alu 144 310 0 1614 178 19 11 chr3 46124917 46125186 -171911972 - AluJo SINE Alu -20 292 22 2005 159 31 11 chr3 46125247 46125605 -171911553 - MLT1A1 LTR MaLR 0 365 1 1463 160 4 0 chr3 46125616 46125854 -171911304 - AluSq SINE Alu -15 298 60 25 31 0 0 chr3 46127090 46127122 -171910036 + AT_rich Low_complexity Low_complexity 1 32 0 1739 169 0 26 chr3 46127255 46127562 -171909596 - AluJb SINE Alu -13 299 1 404 103 29 0 chr3 46127927 46127995 -171909163 - L1PA12 LINE L1 -2 6166 6097 1875 112 60 21 chr3 46128002 46128287 -171908871 - AluSg SINE Alu -14 296 1 1864 160 7 10 chr3 46128400 46128700 -171908458 - AluJb SINE Alu -13 299 1 329 203 0 0 chr3 46128954 46129018 -171908140 - L1MB1 LINE L1 -96 6093 6030 409 141 0 0 chr3 46129035 46129106 -171908052 - Alu SINE Alu 0 311 241 2128 107 0 0 chr3 46129106 46129378 -171907780 - AluSg SINE Alu -38 272 1 231 36 0 0 chr3 46129570 46129598 -171907560 + (TGG)n Simple_repeat Simple_repeat 1 28 0 257 253 24 12 chr3 46130548 46130631 -171906527 + L1MC4 LINE L1 7272 7355 -687 1469 232 3 7 chr3 46130954 46131264 -171905894 - AluJb SINE Alu -3 309 1 1758 174 7 17 chr3 46131451 46131750 -171905408 - AluSq SINE Alu -17 296 1 238 337 18 78 chr3 46132158 46132242 -171904916 - L2 LINE L2 -8 3264 3193 559 111 0 22 chr3 46132242 46132332 -171904826 + L1PA11 LINE L1 6087 6174 0 238 337 18 78 chr3 46132332 46132413 -171904745 - L2 LINE L2 -79 3193 3109 1675 120 0 4 chr3 46132766 46133007 -171904151 - AluSg/x SINE Alu -4 306 67 206 170 0 21 chr3 46133237 46133284 -171903874 + (TTAA)n Simple_repeat Simple_repeat 1 46 0 1667 137 23 4 chr3 46133292 46133548 -171903610 - AluSc SINE Alu -48 261 1 259 56 56 111 chr3 46133576 46133684 -171903474 + (TTATA)n Simple_repeat Simple_repeat 3 104 0 303 197 128 68 chr3 46133686 46133803 -171903355 + L1ME LINE L1 5609 5732 -389 288 194 0 16 chr3 46133832 46133894 -171903264 + L1M4 LINE L1 4562 4622 -1524 2274 97 0 7 chr3 46133920 46134209 -171902949 - AluSx SINE Alu -25 287 1 799 226 12 12 chr3 46134498 46134662 -171902496 - FRAM SINE Alu -2 164 1 237 33 0 0 chr3 46134662 46134692 -171902466 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 518 145 0 0 chr3 46134714 46134790 -171902368 + FRAM/FAM SINE Alu 1 75 -101 225 235 230 40 chr3 46134795 46134995 -171902163 - L1M4 LINE L1 -1162 4984 4747 1086 110 0 0 chr3 46135096 46135242 -171901916 + AluSp/q SINE Alu 164 309 -4 238 310 0 0 chr3 46135326 46135413 -171901745 - MER117 DNA MER1_type -32 165 79 354 179 0 0 chr3 46135582 46135649 -171901509 - FLAM_A SINE Alu -11 122 56 1886 160 36 0 chr3 46135656 46136012 -171901146 - L1MB5 LINE L1 0 6174 5806 310 299 185 16 chr3 46136123 46136307 -171900851 + MIR SINE MIR 46 260 -2 229 222 25 0 chr3 46136629 46136710 -171900448 + L1MC4 LINE L1 6637 6719 -1323 358 142 5 68 chr3 46136722 46136912 -171900246 + (TA)n Simple_repeat Simple_repeat 1 178 0 1965 138 0 0 chr3 46136962 46137231 -171899927 - AluSx SINE Alu -43 269 1 1617 228 59 2 chr3 46137366 46137854 -171899304 - L1M4 LINE L1 -2265 3881 3366 468 291 57 14 chr3 46137854 46138064 -171899094 + MER57B LTR ERV1 4 222 -212 416 205 26 0 chr3 46138114 46138231 -171898927 - L1M4 LINE L1 -2835 3311 3192 1385 82 10 0 chr3 46138659 46138854 -171898304 + MER30 DNA MER1_type 1 197 -33 2153 102 0 51 chr3 46138944 46139259 -171897899 + AluSq SINE Alu 2 300 -13 1875 166 0 10 chr3 46139488 46139790 -171897368 + AluJo SINE Alu 1 299 -13 553 201 113 62 chr3 46140055 46140249 -171896909 - MER105 DNA DNA 0 204 1 2086 105 25 35 chr3 46140826 46141141 -171896017 + AluSx SINE Alu 1 312 0 702 186 0 0 chr3 46141223 46141341 -171895817 + FLAM_C SINE Alu 1 118 -25 669 153 174 21 chr3 46141428 46141572 -171895586 + Tigger3(Golem) DNA MER2_type 6 171 -2858 1715 131 38 16 chr3 46141577 46141887 -171895271 + Tigger3(Golem) DNA MER2_type 2629 2945 -84 1353 77 0 15 chr3 46141887 46142083 -171895075 - MER107 DNA MER1_type -3 194 2 374 176 35 59 chr3 46142083 46142166 -171894992 + Tigger3(Golem) DNA MER2_type 2948 3028 -1 1085 158 77 5 chr3 46143320 46143516 -171893642 - AluJo SINE Alu -21 291 82 766 215 77 41 chr3 46143519 46143720 -171893438 - L1MD2 LINE L1 -16 6343 6130 279 0 0 0 chr3 46143720 46143751 -171893407 + (TG)n Simple_repeat Simple_repeat 2 32 0 766 215 77 41 chr3 46143751 46143795 -171893363 - L1MD2 LINE L1 -229 6130 6089 3341 164 6 2 chr3 46144310 46144835 -171892323 - MER1A DNA MER1_type 0 527 1 287 197 14 109 chr3 46145049 46145196 -171891962 - L1MC5 LINE L1 -44 7917 7785 375 196 103 65 chr3 46145239 46145327 -171891831 - L1MC5 LINE L1 -157 7804 7721 3557 117 29 2 chr3 46145327 46145839 -171891319 + MER1A DNA MER1_type 1 526 -1 375 196 103 65 chr3 46145839 46145857 -171891301 - L1MC5 LINE L1 -240 7721 7705 1671 181 49 7 chr3 46145857 46146145 -171891013 + AluJb SINE Alu 1 300 -12 375 196 103 65 chr3 46146145 46146221 -171890937 - L1MC5 LINE L1 -256 7705 7614 1874 153 10 17 chr3 46147404 46147705 -171889453 + AluSx SINE Alu 1 299 -13 2035 151 3 7 chr3 46147998 46148297 -171888861 + AluSx SINE Alu 1 298 -14 2533 67 0 13 chr3 46148520 46148834 -171888324 + AluSg SINE Alu 1 310 0 2270 110 0 10 chr3 46151783 46152091 -171885067 - AluSq SINE Alu -8 305 1 221 250 83 0 chr3 46152303 46152375 -171884783 - MIR SINE MIR -13 249 172 1097 173 0 0 chr3 46152393 46152566 -171884592 - FRAM SINE Alu -4 172 1 2208 174 36 5 chr3 46152799 46153213 -171883945 + Tigger4(Zombi) DNA MER2_type 2 428 -2303 2017 141 0 10 chr3 46153213 46153518 -171883640 + AluSx SINE Alu 1 302 -10 4059 107 14 20 chr3 46153518 46154172 -171882986 + Tigger4(Zombi) DNA MER2_type 2077 2726 -5 251 222 81 20 chr3 46154338 46154437 -171882721 - L1MD2 LINE L1 -2024 5784 5680 233 299 103 11 chr3 46155128 46155215 -171881943 - L2 LINE L2 -35 3237 3143 * 340 279 84 58 chr3 46155214 46155368 -171881790 - MIR SINE MIR -77 185 28 2641 63 0 0 chr3 46255666 46255997 -171781161 + HERVH LTR ERV1 4235 4565 -3148 * 2985 77 21 12 chr3 46255979 46256407 -171780751 + HERVH LTR ERV1 7282 7713 0 3339 73 25 5 chr3 46256407 46256846 -171780312 + LTR7 LTR ERV1 1 448 -2 240 275 87 0 chr3 46256908 46256977 -171780181 - MIR SINE MIR -80 182 108 231 270 107 45 chr3 46257917 46258095 -171779063 - L1M4 LINE L1 -2460 3686 3498 1549 255 93 26 chr3 46258108 46258731 -171778427 - HAL1 LINE L1 -2 2505 1841 1464 258 98 69 chr3 46258758 46258813 -171778345 + MLT1G LTR MaLR 10 62 -528 1867 136 7 23 chr3 46258813 46259122 -171778036 + AluJo SINE Alu 1 304 -8 1464 258 98 69 chr3 46259122 46259288 -171777870 + MLT1G LTR MaLR 62 222 -368 1986 143 0 3 chr3 46259288 46259589 -171777569 + AluSx SINE Alu 1 300 -12 1464 258 98 69 chr3 46259589 46259929 -171777229 + MLT1G LTR MaLR 222 588 -2 766 252 63 0 chr3 46259944 46260150 -171777008 - HAL1 LINE L1 -697 1810 1592 203 286 39 39 chr3 46260371 46260448 -171776710 - L3 LINE CR1 -423 1154 1078 356 338 73 0 chr3 46260833 46260969 -171776189 + L1MC4a LINE L1 5923 6068 -1740 373 168 30 90 chr3 46260978 46261152 -171776006 + L1MC5 LINE L1 7098 7222 -739 1237 240 60 88 chr3 46261229 46261908 -171775250 + L1MC5 LINE L1 7251 7910 -51 10013 56 10 55 chr3 46261913 46263363 -171773795 + SVA Other Other 1 1385 -1 305 253 49 122 chr3 46263569 46263873 -171773285 + L1ME4a LINE L1 5784 6065 -56 946 187 11 6 chr3 46263882 46264064 -171773094 - AluJo SINE Alu -5 307 125 1506 180 9 31 chr3 46265392 46265709 -171771449 + AluJo SINE Alu 1 310 -2 1702 122 28 28 chr3 46265886 46266200 -171770958 + AluSx SINE Alu 1 314 0 182 253 89 38 chr3 46266237 46266316 -171770842 + MIR SINE MIR 172 254 -8 2027 94 39 3 chr3 46266379 46266665 -171770493 + AluSp SINE Alu 1 296 -17 554 244 73 29 chr3 46267883 46268088 -171769070 + MLT1H LTR MaLR 1 214 -335 24 53 0 0 chr3 46268335 46268373 -171768785 + AT_rich Low_complexity Low_complexity 1 38 0 287 224 7 112 chr3 46268398 46268453 -171768705 + HAL1 LINE L1 2380 2439 -68 1468 122 43 12 chr3 46268453 46268708 -171768450 - L1MC1 LINE L1 0 6333 6071 287 224 7 112 chr3 46268708 46268795 -171768363 + HAL1 LINE L1 2439 2507 0 2080 71 50 0 chr3 46269255 46269538 -171767620 + AluY SINE Alu 1 297 -14 285 245 84 97 chr3 46269757 46269849 -171767309 - L1ME3 LINE L1 -240 5922 5830 1969 113 3 17 chr3 46269849 46270149 -171767009 - AluSx SINE Alu -16 296 1 285 245 84 97 chr3 46270149 46270293 -171766865 - L1ME3 LINE L1 -332 5830 5689 342 251 192 0 chr3 46270394 46270578 -171766580 - L1P2 LINE L1 -680 5474 5257 509 72 0 0 chr3 46270629 46270698 -171766460 - MER41B LTR ERV1 -86 549 481 2021 125 7 0 chr3 46270748 46271052 -171766106 + AluSx SINE Alu 1 306 -6 1471 160 48 4 chr3 46271080 46271235 -171765923 - AluJb SINE Alu -18 294 121 477 0 0 0 chr3 46271235 46271288 -171765870 + (TG)n Simple_repeat Simple_repeat 2 54 0 1471 160 48 4 chr3 46271288 46271400 -171765758 - AluJb SINE Alu -191 121 15 184 261 29 14 chr3 46271701 46271770 -171765388 + L2 LINE L2 1980 2049 -1265 535 273 133 37 chr3 46271892 46272593 -171764565 - L1MEc LINE L1 -4839 1471 642 1078 266 137 3 chr3 46272651 46272986 -171764172 + LTR40c LTR ERVL 81 460 -5 189 94 0 0 chr3 46273101 46273133 -171764025 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 9860 56 19 59 chr3 46273136 46274576 -171762582 - SVA Other Other -1 1385 3 338 195 24 12 chr3 46274856 46274938 -171762220 - L1MEc LINE L1 -5936 183 101 1402 126 39 0 chr3 46276148 46276378 -171760780 + AluJb SINE Alu 17 255 -57 283 237 0 13 chr3 46276488 46276564 -171760594 - LTR33A LTR ERVL -4 519 445 1825 131 159 31 chr3 46276597 46276980 -171760178 + MSTB1 LTR MaLR 1 432 0 1350 152 0 5 chr3 46277045 46277256 -171759902 + AluJo SINE Alu 86 295 -17 477 343 70 14 chr3 46278648 46278861 -171758297 + MIR SINE MIR 25 249 -13 1942 191 85 86 chr3 46279061 46279780 -171757378 + L1MC5 LINE L1 6726 7443 -518 402 289 45 50 chr3 46279838 46280039 -171757119 - L1MC4a LINE L1 -1851 5957 5758 1020 264 112 37 chr3 46280082 46280572 -171756586 + L1MC4 LINE L1 7126 7672 -173 2292 120 116 22 chr3 46280576 46280692 -171756466 + MER65A LTR ERV1 1 105 -340 2572 102 11 6 chr3 46280692 46281054 -171756104 - THE1B LTR MaLR 0 364 1 2292 120 116 22 chr3 46281054 46281344 -171755814 + MER65A LTR ERV1 105 445 0 449 259 74 104 chr3 46281348 46281618 -171755540 + L1MC4 LINE L1 7734 7995 -47 183 200 100 67 chr3 46281724 46281784 -171755374 - L3 LINE CR1 -80 1497 1436 276 293 150 27 chr3 46281868 46282015 -171755143 - MIR3 SINE MIR -8 200 36 745 303 115 13 chr3 46282078 46282461 -171754697 + LTR16A LTR ERVL 19 440 -10 680 164 55 0 chr3 46282609 46282719 -171754439 + FLAM_A SINE Alu 1 116 -17 2078 129 0 13 chr3 46282722 46283039 -171754119 - AluSq SINE Alu 0 313 1 1274 188 86 24 chr3 46283042 46283334 -171753824 - AluJo SINE Alu -2 310 1 1036 147 0 6 chr3 46283466 46283623 -171753535 + AluSq SINE Alu 138 293 -20 1090 232 16 28 chr3 46283974 46284228 -171752930 - MIR SINE MIR -6 256 6 2243 97 3 0 chr3 46284470 46284769 -171752389 + AluSg SINE Alu 2 301 -9 26 0 0 0 chr3 46284958 46284984 -171752174 + AT_rich Low_complexity Low_complexity 1 26 0 2121 112 3 0 chr3 46285028 46285324 -171751834 + AluSx SINE Alu 1 297 -15 274 198 34 45 chr3 46285329 46285436 -171751722 - L1P4 LINE L1 -297 5869 5758 2121 99 7 3 chr3 46285449 46285751 -171751407 - AluSg SINE Alu -7 303 1 1395 174 20 24 chr3 46285875 46286012 -171751146 + AluJb SINE Alu 1 137 -175 1852 100 44 4 chr3 46286012 46286308 -171750850 + AluY SINE Alu 1 307 0 1395 174 20 24 chr3 46286308 46286319 -171750839 + AluJb SINE Alu 137 293 -19 862 167 14 0 chr3 46286319 46286463 -171750695 + AluJb SINE Alu 148 293 -19 187 137 137 0 chr3 46286631 46286682 -171750476 - L2 LINE L2 -1009 2305 2248 393 190 44 170 chr3 46286804 46287011 -171750147 + L2 LINE L2 3132 3313 0 200 314 78 20 chr3 46287495 46287597 -171749561 + L2 LINE L2 3162 3269 -44 220 355 82 0 chr3 46288346 46288456 -171748702 - L2 LINE L2 -1 3271 3153 279 193 14 82 chr3 46288617 46288739 -171748419 + L1ME LINE L1 5364 5480 -690 895 133 0 0 chr3 46288760 46288888 -171748270 + AluJo SINE Alu 7 134 -178 840 319 108 2 chr3 46288915 46289351 -171747807 - L2 LINE L2 -438 2876 2395 353 311 143 24 chr3 46289730 46289981 -171747177 + MER115 DNA AcHobo 169 449 -244 220 301 122 16 chr3 46290220 46290343 -171746815 + L2 LINE L2 1887 2022 -1292 1757 185 3 3 chr3 46290681 46290989 -171746169 - AluJo SINE Alu -3 309 2 23 33 0 0 chr3 46290996 46291026 -171746132 + AT_rich Low_complexity Low_complexity 1 30 0 2269 95 0 0 chr3 46291053 46291349 -171745809 - AluSg SINE Alu -14 296 1 1147 120 22 11 chr3 46291350 46291534 -171745624 - MER30B DNA MER1_type -4 186 1 21 0 0 0 chr3 46291674 46291695 -171745463 + AT_rich Low_complexity Low_complexity 1 21 0 1642 164 28 0 chr3 46291697 46291984 -171745174 + AluSx SINE Alu 1 295 -17 490 241 79 49 chr3 46292086 46292289 -171744869 - L1ME LINE L1 -392 5729 5521 2091 225 82 62 chr3 46292321 46292814 -171744344 + L2 LINE L2 2232 2714 -599 2153 101 10 3 chr3 46292814 46293112 -171744046 - AluSp SINE Alu -13 300 1 1992 114 10 3 chr3 46293120 46293300 -171743858 - AluSx SINE Alu 0 312 126 387 0 0 0 chr3 46293300 46293343 -171743815 + (TG)n Simple_repeat Simple_repeat 2 44 0 1992 114 10 3 chr3 46293343 46293470 -171743688 - AluSx SINE Alu -186 126 1 2091 225 82 62 chr3 46293470 46293788 -171743370 + L2 LINE L2 2720 3078 -235 1697 128 8 0 chr3 46293788 46294039 -171743119 + AluSx SINE Alu 55 307 -5 2091 225 82 62 chr3 46294039 46294278 -171742880 + L2 LINE L2 3078 3311 -2 225 267 13 40 chr3 46294978 46295053 -171742105 - MIR SINE MIR -138 124 52 21 57 0 0 chr3 46297610 46297645 -171739513 + GC_rich Low_complexity Low_complexity 1 35 0 264 320 39 0 chr3 46298778 46298856 -171738302 - L3 LINE CR1 -909 668 588 847 279 93 0 chr3 46299777 46299992 -171737166 + MIR SINE MIR 7 241 -21 198 222 22 0 chr3 46300413 46300458 -171736700 + MIR SINE MIR 41 86 -122 636 116 34 88 chr3 46300692 46300764 -171736394 - Charlie4 DNA MER1_type -7 1954 1891 1940 97 14 4 chr3 46300764 46301072 -171736086 - AluSx SINE Alu 0 311 1 636 116 34 88 chr3 46301072 46301145 -171736013 - Charlie4 DNA MER1_type -70 1891 1816 188 132 211 0 chr3 46301325 46301363 -171735795 + MIR SINE MIR 84 129 -133 255 159 0 0 chr3 46301512 46301556 -171735602 + L2 LINE L2 3269 3312 -1 443 203 227 0 chr3 46303765 46303893 -171733265 + MIR SINE MIR 106 262 0 427 83 0 167 chr3 46304333 46304429 -171732729 + MADE1 DNA Mariner 1 80 0 511 282 55 0 chr3 46306262 46306425 -171730733 - MIR SINE MIR -60 202 31 1165 154 35 20 chr3 46307848 46308049 -171729109 + MER3 DNA MER1_type 5 208 -1 205 291 19 0 chr3 46310292 46310395 -171726763 + (TCTCTG)n Simple_repeat Simple_repeat 2 106 0 1451 199 27 18 chr3 46310907 46311239 -171725919 - MLT1A2 LTR MaLR -12 362 28 4304 154 61 15 chr3 46311678 46312634 -171724524 - L1MB8 LINE L1 0 6178 5179 729 91 0 0 chr3 46312634 46312733 -171724425 - HY3 scRNA scRNA -2 99 1 4304 154 61 15 chr3 46312733 46312850 -171724308 - L1MB8 LINE L1 -999 5179 5069 1747 212 31 12 chr3 46312884 46313366 -171723792 - L1MB8 LINE L1 -1321 4825 4335 313 268 73 0 chr3 46313608 46313731 -171723427 + L1ME4a LINE L1 5772 5903 -218 2428 62 3 3 chr3 46313779 46314087 -171723071 + AluY SINE Alu 1 308 -3 1513 186 48 20 chr3 46314110 46314405 -171722753 + AluJo SINE Alu 10 312 0 2035 128 7 0 chr3 46314474 46314772 -171722386 + AluSx SINE Alu 1 300 -12 1440 171 100 32 chr3 46314988 46315269 -171721889 + AluJo SINE Alu 11 310 -2 276 257 76 0 chr3 46315272 46315377 -171721781 + L1ME4a LINE L1 5977 6089 -32 468 35 0 0 chr3 46319833 46319891 -171717267 + (TG)n Simple_repeat Simple_repeat 2 59 0 577 193 0 18 chr3 46321761 46321875 -171715283 - L2 LINE L2 -6 3307 3196 * 723 244 75 10 chr3 46321874 46322110 -171715048 - L2 LINE L2 -311 3002 2753 256 257 59 10 chr3 46323853 46323954 -171713204 + MIR SINE MIR 31 136 -72 238 189 57 0 chr3 46326065 46326118 -171711040 + (CCCCAG)n Simple_repeat Simple_repeat 2 57 0 214 295 139 16 chr3 46326317 46326446 -171710712 + MIR SINE MIR 22 166 -96 431 310 11 23 chr3 46326706 46327025 -171710133 + CT-rich Low_complexity Low_complexity 1 315 0 191 36 36 0 chr3 46328114 46328142 -171709016 + (CCCCG)n Simple_repeat Simple_repeat 5 33 0 201 163 0 0 chr3 46328177 46328226 -171708932 + (CCCCG)n Simple_repeat Simple_repeat 5 53 0 224 323 10 10 chr3 46330379 46330478 -171706680 + (TATG)n Simple_repeat Simple_repeat 4 102 0 290 228 18 79 chr3 46330542 46330656 -171706502 + MER94 DNA DNA 24 130 -4 398 280 110 8 chr3 46330705 46330823 -171706335 + MER91B DNA MER1_type 1 130 -60 238 253 228 0 chr3 46330838 46330917 -171706241 + MER91B DNA MER1_type 86 182 -8 683 139 107 25 chr3 46331069 46331191 -171705967 - FRAM SINE Alu -14 162 31 223 285 0 58 chr3 46331860 46331997 -171705161 + (TATATG)n Simple_repeat Simple_repeat 5 133 0 2668 168 41 26 chr3 46332155 46332690 -171704468 + L1MB8 LINE L1 5631 6173 -5 588 198 16 8 chr3 46333820 46333941 -171703217 - AluJb SINE Alu -10 302 181 505 304 77 11 chr3 46334581 46334762 -171702396 + L2 LINE L2 3120 3312 -1 180 152 0 0 chr3 46335849 46335882 -171701276 + C-rich Low_complexity Low_complexity 3 35 0 212 260 13 80 chr3 46335886 46336036 -171701122 + CT-rich Low_complexity Low_complexity 6 145 0 1013 116 94 77 chr3 46338327 46338368 -171698790 - L1MB3 LINE L1 -7 6176 6137 1997 123 13 0 chr3 46338368 46338668 -171698490 - AluSq SINE Alu -9 304 1 1013 116 94 77 chr3 46338668 46338859 -171698299 - L1MB3 LINE L1 -46 6137 5940 712 280 157 16 chr3 46338885 46339397 -171697761 + L2 LINE L2 2700 3303 -10 180 0 0 0 chr3 46339425 46339445 -171697713 + (TG)n Simple_repeat Simple_repeat 2 21 0 263 118 0 20 chr3 46340852 46340903 -171696255 + L1ME4a LINE L1 6049 6098 -23 414 228 88 47 chr3 46341033 46341204 -171695954 - MER5B DNA MER1_type 0 178 1 235 238 143 0 chr3 46342067 46342130 -171695028 + MIR SINE MIR 103 174 -88 201 192 19 0 chr3 46343921 46343973 -171693185 + (TA)n Simple_repeat Simple_repeat 2 54 0 231 88 0 0 chr3 46346093 46346127 -171691031 + (T)n Simple_repeat Simple_repeat 1 34 0 241 241 78 52 chr3 46347268 46347384 -171689774 + L1MC4a LINE L1 6055 6173 -1635 1496 150 14 51 chr3 46347479 46347625 -171689533 - AluJo SINE Alu -29 283 152 2003 103 41 0 chr3 46347625 46347917 -171689241 - AluSq SINE Alu -9 304 1 1496 150 14 51 chr3 46347917 46348063 -171689095 - AluJo SINE Alu -160 152 2 1359 236 113 72 chr3 46348243 46348556 -171688602 + L1MC5 LINE L1 6500 6799 -1162 2039 140 16 28 chr3 46348556 46348920 -171688238 + MER46B DNA MER2_type 1 235 -1 1359 236 113 72 chr3 46348920 46349324 -171687834 + L1MC5 LINE L1 6799 7185 -776 1756 143 13 36 chr3 46349324 46349631 -171687527 - AluJb SINE Alu -12 300 1 1359 236 113 72 chr3 46349631 46350090 -171687068 + L1MC5 LINE L1 7185 7738 -223 2033 89 21 7 chr3 46350589 46350880 -171686278 - AluSc SINE Alu -14 295 1 863 247 11 5 chr3 46351038 46351228 -171685930 - MIR SINE MIR -15 247 57 669 286 95 21 chr3 46351688 46352013 -171685145 + L2 LINE L2 2463 2811 -503 251 183 24 98 chr3 46352285 46352367 -171684791 + L2 LINE L2 3195 3270 -2 1432 109 95 0 chr3 46353079 46353289 -171683869 + MER30 DNA MER1_type 1 230 0 700 200 0 0 chr3 46353402 46353522 -171683636 + L2 LINE L2 3193 3312 -1 2009 90 32 0 chr3 46354737 46355015 -171682143 - AluSx SINE Alu -25 287 1 279 281 0 0 chr3 46355076 46355133 -171682025 + L2 LINE L2 3209 3265 -7 * 587 235 117 22 chr3 46355116 46355295 -171681863 - MIR SINE MIR -19 243 48 423 272 117 99 chr3 46356757 46357202 -171679956 - L2 LINE L2 -4 3268 2816 498 319 62 6 chr3 46358326 46358486 -171678672 + MIR3 SINE MIR 21 189 -19 225 224 178 37 chr3 46362874 46362981 -171674177 + MIR SINE MIR 111 232 -30 315 0 0 0 chr3 46363140 46363175 -171673983 + (T)n Simple_repeat Simple_repeat 1 35 0 22 0 0 0 chr3 46364181 46364203 -171672955 + AT_rich Low_complexity Low_complexity 1 22 0 180 146 21 104 chr3 46364885 46364933 -171672225 + MER5A DNA MER1_type 39 82 -107 448 218 26 70 chr3 46366024 46366180 -171670978 + L1 LINE L1 4904 5052 -1094 352 226 186 24 chr3 46366294 46366451 -171670707 + L1MC4a LINE L1 5280 5447 -674 1874 89 25 21 chr3 46366451 46366626 -171670532 - AluSx SINE Alu 0 306 133 441 0 0 0 chr3 46366626 46366675 -171670483 + (TG)n Simple_repeat Simple_repeat 2 50 0 221 0 0 33 chr3 46366674 46366704 -171670454 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 1874 89 25 21 chr3 46366675 46366704 -171670454 - AluSx SINE Alu -173 133 106 2200 95 10 0 chr3 46366704 46367008 -171670150 - AluSp SINE Alu -6 307 1 1874 89 25 21 chr3 46367008 46367136 -171670022 - AluSx SINE Alu -200 106 1 876 154 0 7 chr3 46367136 46367285 -171669873 - AluJb SINE Alu -164 148 1 538 305 173 16 chr3 46367286 46367709 -171669449 + L1MC4a LINE L1 5438 5926 -1882 21 36 0 0 chr3 46370032 46370060 -171667098 + AT_rich Low_complexity Low_complexity 1 28 0 2521 104 17 0 chr3 46371360 46371717 -171665441 - L1PA15 LINE L1 -13 6152 5790 949 174 6 0 chr3 46371762 46371929 -171665229 - FRAM SINE Alu -9 167 1 853 153 64 13 chr3 46371944 46372101 -171665057 - MER20 DNA MER1_type -1 218 54 423 260 31 0 chr3 46373268 46373395 -171663763 - L1M4 LINE L1 -1889 4257 4127 339 269 47 7 chr3 46373537 46373686 -171663472 - L1M4 LINE L1 -3742 2404 2250 649 270 50 40 chr3 46373710 46373910 -171663248 + MLT1I LTR MaLR 1 202 -207 1674 144 32 16 chr3 46373979 46374291 -171662867 + MER33 DNA MER1_type 6 322 -2 471 236 45 0 chr3 46374310 46374420 -171662738 + MLT1I LTR MaLR 289 403 -6 411 276 153 62 chr3 46374641 46374981 -171662177 + MLT1L LTR MaLR 218 588 -27 203 133 0 0 chr3 46374982 46375012 -171662146 + (TC)n Simple_repeat Simple_repeat 1 30 0 828 229 0 0 chr3 46375022 46375197 -171661961 - AluJb SINE Alu -1 311 137 1740 149 7 14 chr3 46375542 46375831 -171661327 - AluJb SINE Alu -25 287 1 2232 84 0 3 chr3 46375842 46376138 -171661020 - AluY SINE Alu -16 295 1 578 315 99 17 chr3 46376210 46376695 -171660463 - HAL1b LINE L1 -770 578 188 182 240 93 40 chr3 46377422 46377497 -171659661 - L3 LINE CR1 -25 1552 1474 238 270 126 63 chr3 46377507 46377681 -171659477 - L1ME4a LINE L1 -3 6118 5934 767 278 73 48 chr3 46377694 46378103 -171659055 - L1ME4a LINE L1 -249 5872 5447 2714 22 3 0 chr3 46378103 46378418 -171658740 + AluYb8 SINE Alu 1 316 -2 767 278 73 48 chr3 46378418 46378537 -171658621 - L1ME4a LINE L1 -674 5447 5332 334 293 19 89 chr3 46378752 46378909 -171658249 - L1MEc LINE L1 -3728 2450 2273 2097 82 0 4 chr3 46378926 46379205 -171657953 - AluSq SINE Alu -19 294 17 1943 85 99 3 chr3 46379638 46379920 -171657238 - AluSq SINE Alu -4 309 1 195 42 0 0 chr3 46382211 46382235 -171654923 + (CTAA)n Simple_repeat Simple_repeat 2 25 0 458 333 158 0 chr3 46382829 46383057 -171654101 + L1ME4a LINE L1 5847 6110 -11 186 246 15 31 chr3 46384019 46384084 -171653074 + L2 LINE L2 2273 2336 -978 209 380 46 0 chr3 46384209 46384317 -171652841 + L2 LINE L2 2579 2691 -623 955 225 101 5 chr3 46384336 46384554 -171652604 + MIR SINE MIR 9 247 -15 1672 176 7 0 chr3 46384554 46384849 -171652309 - AluJb SINE Alu -13 299 3 1626 134 98 0 chr3 46385529 46385806 -171651352 + AluSx SINE Alu 9 312 0 1423 258 161 12 chr3 46386374 46386871 -171650287 + MLT1K LTR MaLR 2 572 -16 213 353 11 80 chr3 46386889 46387076 -171650082 - L2 LINE L2 -44 3228 3055 2208 93 0 0 chr3 46387105 46387395 -171649763 - AluSg SINE Alu -20 290 1 361 274 216 7 chr3 46387807 46387960 -171649198 + MIR SINE MIR 20 204 -58 1255 87 0 29 chr3 46388370 46388543 -171648615 + AluSg/x SINE Alu 145 312 0 2070 186 60 18 chr3 46389317 46389557 -171647601 + MER31A LTR ERV1 1 230 -431 1533 238 99 21 chr3 46389557 46389981 -171647177 - MSTB2 LTR MaLR 0 457 1 2070 186 60 18 chr3 46389981 46390204 -171646954 + MER31A LTR ERV1 230 661 0 198 0 0 0 chr3 46390525 46390547 -171646611 + (T)n Simple_repeat Simple_repeat 1 22 0 292 246 214 37 chr3 46391143 46391358 -171645800 - MIR SINE MIR -1 261 9 292 258 34 34 chr3 46391644 46391733 -171645425 - MIR SINE MIR -165 97 9 375 282 16 40 chr3 46392243 46392367 -171644791 + L2 LINE L2 3191 3311 -2 237 291 13 0 chr3 46392652 46392731 -171644427 + L1ME4a LINE L1 5982 6061 -60 1549 199 6 22 chr3 46392847 46393163 -171643995 - AluJb SINE Alu -1 311 1 456 253 26 35 chr3 46393241 46393415 -171643743 + L1MC4a LINE L1 5668 5841 -349 783 231 113 28 chr3 46393439 46393651 -171643507 - MIR SINE MIR -31 231 2 319 251 119 88 chr3 46393654 46393949 -171643209 + L1MC4a LINE L1 5839 6142 -1666 687 254 88 68 chr3 46393993 46394028 -171643130 - L1ME LINE L1 -406 5715 5682 2259 108 0 10 chr3 46394028 46394334 -171642824 - AluSx SINE Alu -9 303 1 687 254 88 68 chr3 46394334 46394888 -171642270 - L1ME LINE L1 -439 5682 5124 351 256 101 15 chr3 46395108 46395307 -171641851 - L1ME LINE L1 -1330 4816 4601 1722 207 88 55 chr3 46395466 46395748 -171641410 + L1MB1 LINE L1 2142 2413 -3969 1683 194 0 22 chr3 46395748 46396063 -171641095 + AluJo SINE Alu 1 308 -4 1722 207 88 55 chr3 46396063 46396583 -171640575 + L1MB1 LINE L1 2413 3001 -3381 737 181 0 9 chr3 46396599 46396715 -171640443 + AluJ SINE Alu 7 121 -191 213 154 0 0 chr3 46396715 46396754 -171640404 + (TAA)n Simple_repeat Simple_repeat 1 39 0 982 174 0 22 chr3 46396769 46396947 -171640211 + AluJ SINE Alu 129 302 -10 501 197 51 0 chr3 46396950 46397067 -171640091 + L1MB1 LINE L1 2991 3113 -3269 * 2379 98 3 0 chr3 46397067 46397372 -171639786 - AluSx SINE Alu -1 311 6 6158 182 17 19 chr3 46397372 46398608 -171638550 + L1MB1 LINE L1 4330 5564 -818 4235 148 34 69 chr3 46398635 46399495 -171637663 + L1MB1 LINE L1 5552 6381 -23 402 21 0 0 chr3 46399495 46399516 -171637642 + (CA)n Simple_repeat Simple_repeat 1 68 0 402 21 0 0 chr3 46399516 46399563 -171637595 + (CA)n Simple_repeat Simple_repeat 2 48 0 1610 107 9 0 chr3 46399700 46399933 -171637225 - Tigger4(Zombi) DNA MER2_type -5 2726 2492 545 122 93 9 chr3 46399936 46400043 -171637115 - L1M LINE L1 -770 5398 5283 610 118 98 0 chr3 46400056 46400158 -171637000 - Tigger4(Zombi) DNA MER2_type -2619 112 1 304 282 84 53 chr3 46400158 46400289 -171636869 - MIR SINE MIR -108 154 20 205 279 90 57 chr3 46400287 46400409 -171636749 + L2 LINE L2 3096 3221 -51 * 642 274 61 5 chr3 46401120 46401317 -171635841 - L2 LINE L2 -4 3309 3102 255 31 0 0 chr3 46401329 46401361 -171635797 + (TG)n Simple_repeat Simple_repeat 2 33 0 497 238 179 0 chr3 46401508 46401659 -171635499 - MER45A DNA AcHobo 0 178 1 253 264 50 16 chr3 46452206 46452327 -171584831 - L1ME4a LINE L1 -22 6099 5975 309 309 59 68 chr3 46452379 46452508 -171584650 + L1M4c LINE L1 3353 3481 -2901 4251 120 19 2 chr3 46452508 46453132 -171584026 + MER41B LTR ERV1 1 635 0 309 309 59 68 chr3 46453132 46453238 -171583920 + L1M4c LINE L1 3481 3586 -2796 329 303 42 0 chr3 46455689 46455808 -171581350 + L2 LINE L2 3147 3270 -2 263 261 15 0 chr3 46456453 46456518 -171580640 - MIR SINE MIR -10 252 187 989 199 47 47 chr3 46456812 46457068 -171580090 + LTR16A1 LTR ERVL 202 457 0 2385 75 0 10 chr3 46458556 46458863 -171578295 + AluSx SINE Alu 1 304 -8 234 0 0 0 chr3 46458896 46458922 -171578236 + (T)n Simple_repeat Simple_repeat 1 26 0 976 189 180 9 chr3 46459517 46459750 -171577408 + LTR16C LTR ERVL 219 491 0 612 257 108 11 chr3 46460931 46461378 -171575780 + MLT1H LTR MaLR 8 549 0 2248 94 0 0 chr3 46461484 46461781 -171575377 - AluSx SINE Alu -15 297 1 580 194 0 48 chr3 46462264 46462388 -171574770 + MER91B DNA MER1_type 13 130 -60 458 179 0 53 chr3 46462416 46462511 -171574647 + MER91B DNA MER1_type 101 190 0 2109 86 7 0 chr3 46462547 46462825 -171574333 - AluSx SINE Alu -32 280 1 242 250 0 18 chr3 46463782 46463838 -171573320 + Tigger5 DNA MER2_type 1 55 -2268 247 240 0 0 chr3 46465521 46465571 -171571587 + GA-rich Low_complexity Low_complexity 1 50 0 2132 115 7 0 chr3 46466392 46466688 -171570470 + AluSx SINE Alu 1 298 -14 2037 121 7 0 chr3 46467727 46468024 -171569134 + AluSx SINE Alu 6 304 -8 1671 232 116 33 chr3 46468053 46468562 -171568596 + MLT1H1 LTR MaLR 1 551 -4 226 349 88 21 chr3 46469117 46469309 -171567849 + L2 LINE L2 2324 2528 -786 724 252 45 0 chr3 46469354 46469509 -171567649 - FRAM SINE Alu -4 162 1 199 280 56 28 chr3 46469700 46469807 -171567351 + L2 LINE L2 2948 3057 -215 * 418 329 113 5 chr3 46469802 46470015 -171567143 - MIR SINE MIR -24 238 3 342 98 0 0 chr3 46470782 46470833 -171566325 + (CA)n Simple_repeat Simple_repeat 1 51 0 628 267 54 93 chr3 46471002 46471135 -171566023 + L1ME LINE L1 5458 5595 -526 1901 116 3 33 chr3 46471135 46471436 -171565722 + AluSq SINE Alu 1 292 -21 628 267 54 93 chr3 46471436 46471635 -171565523 + L1ME LINE L1 5595 5777 -344 1548 160 50 7 chr3 46471759 46472040 -171565118 + AluJo SINE Alu 1 293 -19 212 234 31 16 chr3 46472429 46472493 -171564665 - L2 LINE L2 -34 3238 3174 2077 94 42 3 chr3 46473310 46473598 -171563560 - AluSx SINE Alu -8 304 6 188 303 92 0 chr3 46474036 46474112 -171563046 + L2 LINE L2 3143 3225 -47 661 255 128 16 chr3 46474215 46474403 -171562755 - MER63A DNA MER1_type 0 210 2 390 334 136 2 chr3 46474836 46475038 -171562120 - MIR SINE MIR -8 254 30 310 331 110 0 chr3 46475258 46475385 -171561773 + MIR SINE MIR 110 250 -12 912 172 12 0 chr3 46475445 46475614 -171561544 - AluSg/x SINE Alu -6 304 134 1392 237 65 63 chr3 46475622 46475911 -171561247 - L1ME3A LINE L1 0 6170 5878 1798 124 3 49 chr3 46475911 46476218 -171560940 - AluSx SINE Alu -2 310 18 1392 237 65 63 chr3 46476218 46476388 -171560770 - L1ME3A LINE L1 -292 5878 5710 216 328 134 0 chr3 46477409 46477528 -171559630 + L2 LINE L2 2688 2822 -492 1396 139 9 9 chr3 46477708 46477938 -171559220 + AluSg/x SINE Alu 83 312 0 733 259 14 14 chr3 46477938 46478158 -171559000 + L1ME LINE L1 5605 5824 -297 1094 191 60 15 chr3 46478171 46478459 -171558699 - LTR37B LTR ERV1 0 468 139 675 201 136 6 chr3 46478517 46478677 -171558481 - MER5A DNA MER1_type 0 189 6 470 143 0 0 chr3 46478691 46478761 -171558397 - LTR37B LTR ERV1 -389 79 10 1592 173 7 0 chr3 46478825 46479097 -171558061 + AluJo SINE Alu 13 286 -26 24 0 0 29 chr3 46479097 46479118 -171558040 + AT_rich Low_complexity Low_complexity 1 22 -12 1398 146 189 4 chr3 46479118 46479372 -171557786 + AluSx SINE Alu 1 301 -1 24 0 0 29 chr3 46479372 46479385 -171557773 + AT_rich Low_complexity Low_complexity 22 34 0 1355 170 25 85 chr3 46479732 46480050 -171557108 - AluJb SINE Alu -13 299 1 565 179 8 8 chr3 46480497 46480631 -171556527 + (TCCA)n Simple_repeat Simple_repeat 2 135 0 624 319 127 26 chr3 46480631 46481172 -171555986 - L2 LINE L2 0 3313 2713 220 294 81 40 chr3 46481221 46481469 -171555689 - L2 LINE L2 -2882 432 175 304 260 0 13 chr3 46482408 46482485 -171554673 - MIR SINE MIR -11 251 176 648 262 143 25 chr3 46483165 46483503 -171553655 + LTR16A1 LTR ERVL 88 457 0 455 48 0 16 chr3 46483651 46483714 -171553444 + (TG)n Simple_repeat Simple_repeat 2 63 0 610 295 105 44 chr3 46484287 46484886 -171552272 + L2 LINE L2 2589 3270 -2 200 317 49 12 chr3 46485402 46485484 -171551674 - MIR SINE MIR -19 243 159 259 265 0 51 chr3 46485624 46485722 -171551436 + LTR67 LTR ERVL 433 525 -32 2313 72 0 31 chr3 46487310 46487628 -171549530 - AluY SINE Alu -3 308 1 22 35 0 0 chr3 46488278 46488307 -171548851 + AT_rich Low_complexity Low_complexity 1 29 0 278 252 72 58 chr3 46488503 46488642 -171548516 + MIR SINE MIR 64 204 -58 496 181 12 0 chr3 46490158 46490241 -171546917 + AluJb SINE Alu 198 281 -31 256 31 0 0 chr3 46490241 46490273 -171546885 + (CAAA)n Simple_repeat Simple_repeat 1 132 0 210 57 29 0 chr3 46490480 46490515 -171546643 + (TTTG)n Simple_repeat Simple_repeat 1 144 0 1355 158 45 0 chr3 46490515 46490736 -171546422 - AluSx SINE Alu -1 315 51 1359 165 42 35 chr3 46491351 46491611 -171545547 + AluJo SINE Alu 21 282 -30 207 0 0 0 chr3 46491615 46491638 -171545520 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 1535 180 35 18 chr3 46493474 46493757 -171543401 + AluJo SINE Alu 1 288 -24 26 50 0 0 chr3 46493757 46493797 -171543361 + AT_rich Low_complexity Low_complexity 1 40 0 2396 82 0 3 chr3 46493959 46494252 -171542906 - AluSg SINE Alu -18 292 1 1262 158 35 0 chr3 46495654 46495856 -171541302 + MER58A DNA MER1_type 12 220 -4 420 225 254 0 chr3 46495862 46496000 -171541158 + MER5A DNA MER1_type 11 183 -6 266 209 229 9 chr3 46496015 46496120 -171541038 + MER5A DNA MER1_type 39 166 -23 * 589 128 0 0 chr3 46496050 46496151 -171541007 - MER5A DNA MER1_type -85 104 4 3996 111 41 44 chr3 46496228 46496929 -171540229 + L1PB4 LINE L1 5456 6154 -2 2001 145 3 0 chr3 46497701 46498004 -171539154 + AluSx SINE Alu 1 304 -8 180 0 0 0 chr3 46498208 46498228 -171538930 + (A)n Simple_repeat Simple_repeat 1 20 0 2196 242 42 29 chr3 46498410 46498468 -171538690 - L1ME3 LINE L1 -6 6156 6100 2325 92 3 0 chr3 46498468 46498763 -171538395 - AluSx SINE Alu -16 296 1 2196 242 42 29 chr3 46498763 46499299 -171537859 - L1ME3 LINE L1 -62 6100 5554 6093 100 53 0 chr3 46500748 46501431 -171535727 - L1PA14 LINE L1 0 6161 5457 2297 70 10 10 chr3 46501431 46501732 -171535426 - AluY SINE Alu -10 301 1 6093 100 53 0 chr3 46501732 46502085 -171535073 - L1PA14 LINE L1 -704 5457 5124 1617 150 30 93 chr3 46502345 46502678 -171534480 - AluJb SINE Alu 0 312 1 743 176 73 73 chr3 46503277 46503482 -171533676 - L1ME2 LINE L1 -1 6163 5959 331 292 46 77 chr3 46504555 46504664 -171532494 - MIR SINE MIR -8 254 143 2234 113 0 7 chr3 46504664 46504964 -171532194 - AluSx SINE Alu -14 298 1 331 292 46 77 chr3 46504964 46505114 -171532044 - MIR SINE MIR -119 143 3 289 265 26 17 chr3 46505370 46505487 -171531671 - MIR3 SINE MIR -4 204 87 290 237 136 8 chr3 46505536 46505654 -171531504 + MIR3 SINE MIR 40 172 -36 345 91 0 0 chr3 46506906 46506950 -171530208 + MER94 DNA DNA 2 45 -89 333 78 20 0 chr3 46507034 46507085 -171530073 - MIR SINE MIR -117 145 94 216 330 32 46 chr3 46507315 46507533 -171529625 - L2 LINE L2 -232 3040 2826 2392 97 3 0 chr3 46507729 46508028 -171529130 - AluSp SINE Alu -13 300 1 696 286 134 24 chr3 46511971 46512307 -171524851 - L2 LINE L2 -19 3294 2922 228 67 0 0 chr3 46512587 46512617 -171524541 + (T)n Simple_repeat Simple_repeat 1 30 0 555 217 172 33 chr3 46513793 46514037 -171523121 + L2 LINE L2 3035 3312 -1 271 266 51 0 chr3 46514052 46514131 -171523027 - MIR SINE MIR -78 184 102 204 205 39 51 chr3 46514205 46514283 -171522875 - MER5A DNA MER1_type -84 105 29 2778 163 91 11 chr3 46514331 46514878 -171522280 + LTR49 LTR ERV1 1 591 -4 1723 152 34 50 chr3 46514894 46515369 -171521789 - MER41B LTR ERV1 -4 597 114 726 221 193 24 chr3 46515730 46515984 -171521174 - L1ME LINE L1 -467 5723 5427 546 134 12 0 chr3 46515984 46516066 -171521092 - AluJ/FLAM SINE Alu -228 84 2 484 302 130 24 chr3 46516073 46516497 -171520661 - L1ME LINE L1 -783 5432 4964 1402 179 76 137 chr3 46516520 46516787 -171520371 - L1M4 LINE L1 -4959 1583 1301 1559 116 38 134 chr3 46516787 46517131 -171520027 - AluYb8 SINE Alu -7 311 1 1402 179 76 137 chr3 46517131 46517142 -171520016 - L1M4 LINE L1 -5241 1301 1291 2205 115 3 10 chr3 46517142 46517456 -171519702 - AluSx SINE Alu 0 312 1 1402 179 76 137 chr3 46517456 46517926 -171519232 - L1M4 LINE L1 -5251 1291 880 280 215 11 21 chr3 46517932 46518025 -171519133 + (TATATG)n Simple_repeat Simple_repeat 4 95 0 343 322 44 22 chr3 46518078 46518258 -171518900 - L1M4 LINE L1 -5668 874 691 395 290 84 79 chr3 46518406 46518720 -171518438 - L1ME LINE L1 -2099 4116 3805 2810 25 6 6 chr3 46518720 46519038 -171518120 - AluYb8 SINE Alu 0 318 1 395 290 84 79 chr3 46519038 46519409 -171517749 - L1ME LINE L1 -2410 3805 3437 1454 177 73 10 chr3 46519409 46519697 -171517461 - AluJo SINE Alu -4 308 3 395 290 84 79 chr3 46519697 46520374 -171516784 - L1ME LINE L1 -2778 3437 2746 424 311 60 17 chr3 46520375 46520585 -171516573 - MIR SINE MIR -25 237 21 305 283 175 22 chr3 46520946 46521169 -171515989 - L1ME LINE L1 -4037 2359 2103 300 314 146 11 chr3 46521792 46521977 -171515181 + MIR SINE MIR 2 211 -51 795 194 10 80 chr3 46526959 46527160 -171509998 - MER5A DNA MER1_type 0 189 3 181 299 0 39 chr3 46527162 46527239 -171509919 - MIR3 SINE MIR -48 160 87 402 214 1 4 chr3 46527531 46527615 -171509543 + L1MB8 LINE L1 5929 6010 -168 2118 195 82 11 chr3 46527620 46528086 -171509072 + MLT1D LTR MaLR 7 505 0 2240 113 3 3 chr3 46528304 46528604 -171508554 - AluSx SINE Alu -7 305 6 227 91 0 0 chr3 46529010 46529043 -171508115 + L1MB8 LINE L1 6031 6063 -115 401 77 0 0 chr3 46529043 46529095 -171508063 + L1MA2 LINE L1 5836 5887 -417 1209 130 36 85 chr3 46529110 46529357 -171507801 + AluJb SINE Alu 77 311 -1 2339 91 50 84 chr3 46529371 46529813 -171507345 + L1MA2 LINE L1 5878 6304 0 577 206 15 0 chr3 46529824 46529960 -171507198 + L1MB7 LINE L1 6047 6184 0 740 220 141 11 chr3 46532227 46532418 -171504740 + MER58B DNA MER1_type 124 339 -2 21 0 0 0 chr3 46533498 46533519 -171503639 + AT_rich Low_complexity Low_complexity 1 21 0 771 240 99 55 chr3 46535528 46535962 -171501196 - LTR16C LTR ERVL -37 454 2 345 194 30 0 chr3 46536166 46536233 -171500925 + MER5B DNA MER1_type 94 162 -16 334 303 91 5 chr3 46536315 46536513 -171500645 - MIR SINE MIR -16 246 32 263 231 0 31 chr3 46536558 46536623 -171500535 + GA-rich Low_complexity Low_complexity 1 63 0 244 279 0 0 chr3 46537885 46537946 -171499212 + L2 LINE L2 3248 3308 -5 752 228 11 28 chr3 46537979 46538159 -171498999 + MER5B DNA MER1_type 2 178 0 1456 212 38 9 chr3 46538970 46539314 -171497844 + L1MC4 LINE L1 7689 8042 0 1159 247 98 27 chr3 46540425 46540796 -171496362 + MER113 DNA MER1_type? 7 417 -104 1545 184 20 79 chr3 46540796 46541187 -171495971 + MLT1A2 LTR MaLR 4 371 -3 1159 247 98 27 chr3 46541187 46541265 -171495893 + MER113 DNA MER1_type? 417 488 -33 198 344 145 8 chr3 46541389 46541520 -171495638 + MIR3 SINE MIR 51 199 -9 2241 91 3 10 chr3 46542261 46542558 -171494600 + AluSx SINE Alu 1 295 -17 409 247 0 0 chr3 46543140 46543225 -171493933 - MER113 DNA MER1_type? -33 488 404 565 162 86 0 chr3 46543225 46543342 -171493816 - MLT1A2 LTR MaLR 0 404 264 251 35 0 0 chr3 46543506 46543535 -171493623 + (T)n Simple_repeat Simple_repeat 1 29 0 255 183 92 58 chr3 46545188 46545308 -171491850 - Charlie7 DNA MER1_type -39 2573 2450 397 212 20 10 chr3 46545366 46545465 -171491693 + L1ME3A LINE L1 6059 6158 -12 865 88 8 0 chr3 46545706 46545831 -171491327 + AluY SINE Alu 178 303 -8 257 262 0 60 chr3 46546765 46546849 -171490309 - MER94 DNA DNA -2 132 54 2479 92 0 0 chr3 46547043 46547348 -171489810 + AluSc SINE Alu 1 305 -4 848 236 130 27 chr3 46547961 46548262 -171488896 + LTR16A1 LTR ERVL 126 457 0 21 36 0 0 chr3 46549598 46549626 -171487532 + AT_rich Low_complexity Low_complexity 1 28 0 2079 167 109 0 chr3 46549764 46550141 -171487017 + MER47B DNA MER2_type 1 418 0 258 307 0 0 chr3 46550223 46550298 -171486860 + L2 LINE L2 3235 3309 -4 258 350 32 16 chr3 46551144 46551267 -171485891 + MIR SINE MIR 53 177 -85 360 306 169 0 chr3 46551304 46551487 -171485671 - MIR SINE MIR -4 258 45 673 160 0 34 chr3 46652653 46652772 -171384386 + FLAM_C SINE Alu 17 131 -12 21 0 0 0 chr3 46652775 46652796 -171384362 + AT_rich Low_complexity Low_complexity 1 21 0 2255 92 20 10 chr3 46652885 46653190 -171383968 - AluSx SINE Alu -4 308 1 2043 78 23 0 chr3 46653404 46653660 -171383498 + AluSc SINE Alu 32 293 -16 739 188 19 19 chr3 46653829 46653983 -171383175 - AluJb SINE Alu -6 306 153 688 206 8 0 chr3 46654598 46654729 -171382429 - AluJb SINE Alu -179 133 2 552 258 86 66 chr3 46654730 46654953 -171382205 - L1ME LINE L1 -350 5820 5586 1931 143 0 14 chr3 46654953 46655247 -171381911 - AluSx SINE Alu -22 290 1 552 258 86 66 chr3 46655247 46655372 -171381786 - L1ME LINE L1 -584 5586 5465 227 218 172 11 chr3 46655565 46655652 -171381506 + MIR SINE MIR 47 147 -115 896 249 15 0 chr3 46655817 46656022 -171381136 - MIR SINE MIR -41 221 14 225 276 41 20 chr3 46656126 46656224 -171380934 + L1MC4a LINE L1 7708 7807 -1 1855 145 0 37 chr3 46658163 46658459 -171378699 - AluSx SINE Alu -27 285 1 245 330 21 0 chr3 46658542 46658639 -171378519 - MIR SINE MIR -14 248 150 2121 111 21 0 chr3 46658721 46659010 -171378148 - AluSq SINE Alu -18 295 1 222 333 8 61 chr3 46659489 46659621 -171377537 + L2 LINE L2 2930 3054 -218 288 268 89 16 chr3 46662009 46662094 -171375064 - MER5A DNA MER1_type -44 145 47 894 138 6 31 chr3 46662094 46662253 -171374905 - L1PA15 LINE L1 0 6165 6011 288 268 89 16 chr3 46662253 46662290 -171374868 - MER5A DNA MER1_type -142 47 14 2755 135 20 0 chr3 46662330 46662737 -171374421 + MER57B LTR ERV1 5 419 -15 981 131 0 0 chr3 46662894 46663031 -171374127 + AluJo SINE Alu 1 137 -175 38 22 0 0 chr3 46663052 46663097 -171374061 + AT_rich Low_complexity Low_complexity 1 45 0 726 231 17 34 chr3 46663769 46664003 -171373155 + AluSq SINE Alu 2 231 -82 987 108 23 0 chr3 46665399 46665529 -171371629 - AluSq/x SINE Alu -180 133 1 259 274 45 76 chr3 46665684 46665841 -171371317 - MLT1K LTR MaLR -435 153 2 355 313 89 18 chr3 46665999 46666223 -171370935 - MIR SINE MIR -12 250 11 960 204 47 9 chr3 46666230 46666441 -171370717 + MER20 DNA MER1_type 1 219 0 250 276 160 22 chr3 46666479 46666660 -171370498 + L2 LINE L2 3095 3300 -13 186 43 0 0 chr3 46666661 46666684 -171370474 + (TGAA)n Simple_repeat Simple_repeat 2 24 0 397 235 10 10 chr3 46667084 46667182 -171369976 + MIR SINE MIR 165 262 0 182 62 31 0 chr3 46667602 46667634 -171369524 + (TTTTG)n Simple_repeat Simple_repeat 5 37 0 1940 146 7 0 chr3 46667989 46668276 -171368882 - AluJb SINE Alu -23 289 1 505 165 61 17 chr3 46668282 46668397 -171368761 - MIR SINE MIR -69 193 74 640 240 82 14 chr3 46668426 46668634 -171368524 + MER113 DNA MER1_type? 79 300 -221 402 74 0 0 chr3 46668634 46668688 -171368470 + (TC)n Simple_repeat Simple_repeat 2 55 0 704 147 9 0 chr3 46668699 46668815 -171368343 + MER41B LTR ERV1 1 117 -518 271 274 189 0 chr3 46669090 46669196 -171367962 - MER5B DNA MER1_type -52 126 1 310 240 240 6 chr3 46669204 46669375 -171367783 - MER5C DNA MER1_type 0 324 114 264 244 0 90 chr3 46669388 46669466 -171367692 + AluJo SINE Alu 87 157 -145 684 186 0 0 chr3 46669509 46669622 -171367536 - FLAM_A SINE Alu -7 135 23 307 233 23 39 chr3 46669623 46669752 -171367406 - MER5C DNA MER1_type -196 128 2 274 282 161 0 chr3 46670263 46670387 -171366771 - MIR SINE MIR -8 254 111 840 250 81 110 chr3 46670388 46670664 -171366494 + HAL1 LINE L1 1828 2111 -396 987 199 0 0 chr3 46670664 46670825 -171366333 + FAM SINE Alu 1 161 -14 840 250 81 110 chr3 46670825 46671231 -171365927 + HAL1 LINE L1 2111 2490 -17 2573 63 0 0 chr3 46671234 46671533 -171365625 - AluY SINE Alu -12 299 1 21 36 0 0 chr3 46671538 46671566 -171365592 + AT_rich Low_complexity Low_complexity 1 28 0 204 271 0 0 chr3 46672240 46672299 -171364859 + MIR SINE MIR 49 107 -155 819 284 26 0 chr3 46672408 46672640 -171364518 + LTR16A LTR ERVL 105 342 -108 525 225 5 139 chr3 46673446 46673633 -171363525 + MIR SINE MIR 82 243 -19 2119 122 0 3 chr3 46673690 46673977 -171363181 + AluSx SINE Alu 1 286 -26 342 0 0 0 chr3 46674192 46674230 -171362928 + (TG)n Simple_repeat Simple_repeat 1 38 0 1545 168 0 64 chr3 46674230 46674527 -171362631 - AluJb SINE Alu -33 279 2 434 230 46 63 chr3 46675243 46675417 -171361741 - MIR SINE MIR 0 262 92 1156 159 0 0 chr3 46675544 46675720 -171361438 - FRAM SINE Alu -8 168 1 476 219 35 123 chr3 46676834 46677062 -171360096 + MLT1G LTR MaLR 383 590 0 2289 114 0 0 chr3 46677279 46677578 -171359580 - AluSx SINE Alu -13 299 1 279 131 49 33 chr3 46678031 46678092 -171359066 + LTR67 LTR ERVL 492 553 -4 1689 186 0 3 chr3 46678675 46678971 -171358187 - AluJo SINE Alu -17 295 1 1481 119 140 0 chr3 46679140 46679375 -171357783 + AluJb SINE Alu 12 279 -33 339 25 0 0 chr3 46679376 46679416 -171357742 + (CA)n Simple_repeat Simple_repeat 2 41 0 757 167 123 54 chr3 46679901 46680105 -171357053 + MER20 DNA MER1_type 1 218 -1 2173 109 0 16 chr3 46680172 46680475 -171356683 - AluSx SINE Alu -14 298 1 313 250 29 0 chr3 46680586 46680690 -171356468 - MER113 DNA MER1_type? -405 116 10 195 42 0 0 chr3 46680695 46680719 -171356439 + (ATG)n Simple_repeat Simple_repeat 3 26 0 2345 114 0 0 chr3 46681438 46681745 -171355413 - AluSx SINE Alu -5 307 1 221 250 0 0 chr3 46681896 46681940 -171355218 + (TG)n Simple_repeat Simple_repeat 2 45 0 434 238 108 17 chr3 46681990 46682159 -171354999 - MIR SINE MIR -62 146 7 1467 170 8 26 chr3 46682185 46682450 -171354708 + AluJb SINE Alu 9 268 -44 432 320 59 5 chr3 46682908 46683130 -171354028 - MER113 DNA MER1_type? 0 521 288 2081 97 0 4 chr3 46683133 46683412 -171353746 - MER41B LTR ERV1 0 635 358 2219 116 0 3 chr3 46683413 46683714 -171353444 - AluSq SINE Alu -13 300 1 224 276 13 53 chr3 46683889 46683965 -171353193 + L2 LINE L2 2715 2787 -527 1054 248 64 61 chr3 46683998 46684438 -171352720 - MLT1H LTR MaLR -16 533 93 1277 171 73 24 chr3 46684438 46684684 -171352474 - AluJo SINE Alu -20 292 35 225 341 11 0 chr3 46684936 46685027 -171352131 + MIR SINE MIR 164 255 -7 22 0 0 0 chr3 46685393 46685415 -171351743 + AT_rich Low_complexity Low_complexity 1 22 0 2353 84 0 13 chr3 46685587 46685895 -171351263 + AluY SINE Alu 1 304 -7 507 223 109 50 chr3 46686879 46687099 -171350059 + MIR SINE MIR 30 262 0 366 279 10 10 chr3 46687103 46687207 -171349951 - MIR SINE MIR -99 163 60 1878 134 69 0 chr3 46687340 46687616 -171349542 + AluJb SINE Alu 5 299 -13 346 231 0 48 chr3 46688589 46688693 -171348465 - MER113 DNA MER1_type? -44 477 379 1055 170 0 0 chr3 46688709 46688868 -171348290 + FRAM SINE Alu 1 158 -18 2278 108 3 16 chr3 46688876 46689192 -171347966 + AluSx SINE Alu 1 312 0 247 240 107 0 chr3 46689195 46689270 -171347888 - MER113 DNA MER1_type? -437 84 2 2218 127 0 3 chr3 46689605 46689913 -171347245 + AluSq SINE Alu 1 307 -6 227 362 11 0 chr3 46690031 46690125 -171347033 + MIR SINE MIR 162 256 -6 281 295 21 42 chr3 46690478 46690573 -171346585 - MER5A DNA MER1_type -88 101 9 1258 177 4 38 chr3 46690722 46690988 -171346170 - AluJo SINE Alu -35 277 21 199 204 0 56 chr3 46691448 46691502 -171345656 - L3b LINE CR1 -14 1569 1519 2082 124 0 38 chr3 46691719 46692033 -171345125 + AluSx SINE Alu 1 302 -10 346 304 75 28 chr3 46692089 46692342 -171344816 + L2 LINE L2 2872 3136 -177 771 230 108 10 chr3 46692433 46692637 -171344521 - MIR SINE MIR -16 246 23 214 227 45 30 chr3 46692663 46692729 -171344429 + L2 LINE L2 3205 3271 -42 2420 96 0 10 chr3 46692909 46693222 -171343936 - AluSx SINE Alu -2 310 1 2083 130 0 10 chr3 46693519 46693819 -171343339 - AluSx SINE Alu -15 297 1 346 237 10 41 chr3 46693871 46693968 -171343190 - MIR SINE MIR -136 126 33 369 58 0 0 chr3 46697490 46697542 -171339616 + (CA)n Simple_repeat Simple_repeat 2 53 0 205 213 173 40 chr3 46699472 46699547 -171337611 - MIR SINE MIR -122 140 56 1121 133 104 82 chr3 46699970 46699997 -171337161 - MER33 DNA MER1_type -2261 324 299 2209 87 0 26 chr3 46699997 46700307 -171336851 + AluSx SINE Alu 1 302 -10 1121 133 104 82 chr3 46700307 46700596 -171336562 - MER33 DNA MER1_type -2286 299 1 308 333 45 50 chr3 46701218 46701419 -171335739 + L2 LINE L2 2564 2763 -551 901 174 0 0 chr3 46701630 46701779 -171335379 + AluJb SINE Alu 156 304 -8 24 0 0 0 chr3 46701779 46701803 -171335355 + AT_rich Low_complexity Low_complexity 1 24 0 431 269 109 78 chr3 46701803 46702097 -171335061 - L1MC4a LINE L1 -1634 6174 5872 244 379 121 0 chr3 46702205 46702321 -171334837 + L2 LINE L2 3124 3253 -19 221 83 28 0 chr3 46704259 46704295 -171332863 + (TTTTC)n Simple_repeat Simple_repeat 2 38 0 436 333 83 6 chr3 46704500 46704668 -171332490 - MIR SINE MIR -58 204 24 1992 77 11 33 chr3 46705730 46706004 -171331154 + AluSp SINE Alu 1 268 -45 417 123 0 0 chr3 46706012 46706077 -171331081 + (GA)n Simple_repeat Simple_repeat 2 66 0 1814 127 3 76 chr3 46706427 46706741 -171330417 - AluSx SINE Alu -1 311 21 231 154 45 136 chr3 46707574 46707684 -171329474 + L1MC5 LINE L1 7832 7931 -30 4315 168 43 25 chr3 46707858 46708112 -171329046 - L1MB5 LINE L1 -36 6138 5890 2326 77 3 7 chr3 46708112 46708412 -171328746 - AluY SINE Alu -12 299 1 4315 168 43 25 chr3 46708412 46709198 -171327960 - L1MB5 LINE L1 -284 5890 5083 22 56 0 0 chr3 46709529 46709565 -171327593 + AT_rich Low_complexity Low_complexity 1 36 0 2166 138 77 57 chr3 46709572 46710063 -171327095 - L1MA8 LINE L1 -1 6290 5790 1686 128 16 4 chr3 46710136 46710378 -171326780 + AluSc SINE Alu 4 248 -61 363 138 103 0 chr3 46710388 46710446 -171326712 - AluS SINE Alu -244 64 1 654 122 0 0 chr3 46710891 46710981 -171326177 + 5S rRNA rRNA 1 90 -31 2048 125 3 7 chr3 46711303 46711600 -171325558 + AluSq SINE Alu 1 296 -17 270 225 108 16 chr3 46711789 46711918 -171325240 - L1ME3A LINE L1 -219 5951 5811 369 303 34 39 chr3 46711928 46712136 -171325022 - L1ME3A LINE L1 -469 5701 5495 1850 122 23 46 chr3 46712146 46712354 -171324804 - AluSx SINE Alu -15 297 97 2250 109 3 3 chr3 46712354 46712665 -171324493 - AluSp SINE Alu -2 311 1 1850 122 23 46 chr3 46712665 46712760 -171324398 - AluSx SINE Alu -215 97 1 942 204 70 125 chr3 46712773 46713332 -171323826 - L1MC5 LINE L1 -389 7572 7045 1945 139 0 0 chr3 46713371 46713645 -171323513 - AluSx SINE Alu -38 274 1 703 254 61 66 chr3 46713645 46713741 -171323417 - L1ME3A LINE L1 -1289 4857 4762 843 148 0 15 chr3 46713741 46713876 -171323282 - FLAM_C SINE Alu 0 133 1 703 254 61 66 chr3 46713876 46714173 -171322985 - L1ME3A LINE L1 -1384 4762 4466 1684 179 32 7 chr3 46714176 46714455 -171322703 + AluJb SINE Alu 1 286 -26 2101 93 0 0 chr3 46714937 46715205 -171321953 + AluSg SINE Alu 28 295 -15 697 285 83 35 chr3 46715627 46716091 -171321067 - L1ME3A LINE L1 -222 5948 5464 13811 127 44 29 chr3 46719886 46721383 -171315775 - Tigger1 DNA MER2_type 0 2418 870 2550 84 8 51 chr3 46721383 46721774 -171315384 - THE1C LTR MaLR 0 375 2 13811 127 44 29 chr3 46721774 46722658 -171314500 - Tigger1 DNA MER2_type -1548 870 1 786 204 58 23 chr3 46722796 46722968 -171314190 - AluJo SINE Alu -25 287 110 867 152 0 21 chr3 46722990 46723135 -171314023 - AluJo SINE Alu -170 142 1 190 268 0 54 chr3 46723490 46723546 -171313612 - L3 LINE CR1 -27 1550 1498 259 354 28 34 chr3 46725224 46725402 -171311756 - L3 LINE CR1 -84 1493 1317 279 302 104 10 chr3 46728129 46728225 -171308933 + MIR3 SINE MIR 75 179 -29 305 250 87 14 chr3 46729415 46729630 -171307528 - L1MC4a LINE L1 -232 5889 5664 2487 7 18 14 chr3 46731440 46731777 -171305381 - AluYa5 SINE Alu 0 338 1 25 0 0 0 chr3 46731777 46731802 -171305356 + AT_rich Low_complexity Low_complexity 1 25 0 866 170 136 39 chr3 46731809 46732015 -171305143 - AluJo SINE Alu -44 268 43 2420 86 0 0 chr3 46732020 46732321 -171304837 - AluY SINE Alu -10 301 1 760 254 89 61 chr3 46732668 46733158 -171304000 - L1MC4 LINE L1 -1 8041 7416 2403 86 0 3 chr3 46733467 46733781 -171303377 - AluSq SINE Alu 0 313 1 1566 147 47 53 chr3 46733832 46734132 -171303026 - AluJo SINE Alu -14 298 1 1292 147 20 5 chr3 46734147 46734351 -171302807 - AluJb SINE Alu -20 292 86 23 0 0 0 chr3 46734351 46734374 -171302784 + AT_rich Low_complexity Low_complexity 1 23 0 1965 136 13 10 chr3 46734505 46734807 -171302351 - AluSx SINE Alu -9 303 1 882 136 8 0 chr3 46735040 46735172 -171301986 - FLAM_C SINE Alu 0 133 1 932 199 102 10 chr3 46736762 46736958 -171300200 - MER58A DNA MER1_type -9 215 2 1778 142 18 7 chr3 46737798 46738073 -171299085 + LTR36 LTR ERV1 264 541 -70 317 277 0 0 chr3 46738133 46738216 -171298942 + LTR36-int LTR ERV1 1420 1502 -2783 1209 160 136 98 chr3 46738284 46738652 -171298506 + LTR36-int LTR ERV1 929 1310 -476 373 121 17 0 chr3 46738671 46738729 -171298429 + LTR57-int LTR ERVL 1262 1320 -4023 * 1417 162 59 15 chr3 46738690 46739063 -171298095 + LTR36-int LTR ERV1 1370 2012 -5804 819 55 0 0 chr3 46739053 46739163 -171297995 + LTR36-int LTR ERV1 1701 1810 -6310 * 435 157 0 130 chr3 46739154 46739225 -171297933 + LTR36-int LTR ERV1 3975 4029 -2569 * 1969 105 29 73 chr3 46739225 46739540 -171297618 + AluSx SINE Alu 1 301 -11 435 157 0 130 chr3 46739540 46739576 -171297582 + LTR36-int LTR ERV1 4029 4068 -2530 * 3149 153 24 92 chr3 46739565 46739714 -171297444 + LTR36-int LTR ERV1 1635 1793 -3087 2306 78 10 0 chr3 46739714 46740007 -171297151 - AluY SINE Alu -15 296 1 3149 153 24 92 chr3 46740007 46740382 -171296776 + LTR36-int LTR ERV1 1793 2101 -2779 2042 161 0 0 chr3 46740382 46740693 -171296465 - AluJb SINE Alu -1 311 1 3149 153 24 92 chr3 46740693 46740874 -171296284 + LTR36-int LTR ERV1 2101 2293 -2587 7202 155 45 20 chr3 46740877 46740972 -171296186 + LTR36-int LTR ERV1 1988 2079 -2801 7091 41 21 0 chr3 46740972 46741897 -171295261 - L1PA5 LINE L1 -4 6150 5209 7202 155 45 20 chr3 46741897 46743405 -171293753 + LTR36-int LTR ERV1 2079 3552 -1328 2249 128 56 11 chr3 46743422 46743780 -171293378 - MSTA LTR MaLR -54 374 1 9311 148 19 15 chr3 46743780 46745423 -171291735 - MSTA-int LTR MaLR 0 1651 1 1173 175 57 5 chr3 46745423 46745634 -171291524 - MSTA LTR MaLR 0 426 205 1775 170 92 11 chr3 46745640 46745998 -171291160 + LTR36-int LTR ERV1 4278 4664 -1282 511 233 23 0 chr3 46745985 46746118 -171291040 + LTR36-int LTR ERV1 5634 5769 -562 * 848 165 121 62 chr3 46746131 46746355 -171290803 + LTR36-int LTR ERV1 5914 6150 -181 429 125 42 0 chr3 46746371 46746443 -171290715 + MER49 LTR ERV1 686 760 -163 324 348 57 39 chr3 46746462 46746524 -171290634 + LTR36-int LTR ERV1 6636 6695 -427 2049 134 139 13 chr3 46746524 46746904 -171290254 - MSTA LTR MaLR 0 428 1 324 348 57 39 chr3 46746904 46747071 -171290087 + LTR36-int LTR ERV1 6695 6869 -253 254 250 0 15 chr3 46747047 46747115 -171290043 + LTR36-int LTR ERV1 7448 7514 -242 * 3343 153 40 31 chr3 46747306 46747754 -171289404 + LTR36 LTR ERV1 1 458 -153 2296 67 3 7 chr3 46747754 46748063 -171289095 + AluY SINE Alu 1 308 0 3343 153 40 31 chr3 46748063 46748219 -171288939 + LTR36 LTR ERV1 458 611 0 1607 185 34 7 chr3 46748247 46748539 -171288619 - AluJo SINE Alu 0 312 13 306 235 98 10 chr3 46748629 46748731 -171288427 - L1ME LINE L1 -275 5846 5736 246 224 59 106 chr3 46749441 46749526 -171287632 + MLT1A1-int LTR MaLR 1109 1189 -182 5220 172 144 103 chr3 46749940 46750838 -171286320 - L1MDa LINE L1 -4823 1717 857 381 43 0 0 chr3 46750838 46750885 -171286273 + (CA)n Simple_repeat Simple_repeat 2 48 0 5220 172 144 103 chr3 46750885 46750903 -171286255 - L1MDa LINE L1 -5683 857 841 560 97 373 15 chr3 46750903 46751037 -171286121 - LTR47A LTR ERVL -270 182 1 5220 172 144 103 chr3 46751037 46751622 -171285536 - L1MDa LINE L1 -5699 841 15 615 260 78 29 chr3 46751786 46751990 -171285168 + L2 LINE L2 3100 3313 0 970 95 0 51 chr3 46752304 46752462 -171284696 - L1PA13 LINE L1 -1 6162 6013 3362 109 31 0 chr3 46752462 46752938 -171284220 + L1PA13 LINE L1 5494 5984 -177 727 262 73 32 chr3 46753061 46753102 -171284056 + MIR SINE MIR 2 40 -222 1343 175 117 56 chr3 46753102 46753444 -171283714 + MLT1A1 LTR MaLR 1 363 -2 727 262 73 32 chr3 46753444 46753650 -171283508 + MIR SINE MIR 40 259 -3 610 148 0 142 chr3 46755749 46755904 -171281254 - FLAM_A SINE Alu 0 133 1 235 61 30 0 chr3 46756785 46756818 -171280340 - MER117 DNA MER1_type -39 158 125 319 236 128 82 chr3 46756821 46757016 -171280142 - MLT1H LTR MaLR -1 548 345 423 206 81 37 chr3 46757150 46757286 -171279872 - MLT1H LTR MaLR -405 144 3 298 241 38 0 chr3 46757286 46757363 -171279795 - MER117 DNA MER1_type -112 85 6 335 186 43 0 chr3 46757582 46757652 -171279506 - MLT1H LTR MaLR -363 186 114 519 87 0 0 chr3 46757653 46757722 -171279436 - AluJb SINE Alu -169 143 75 335 240 102 36 chr3 46757730 46757974 -171279184 + MLT1G LTR MaLR 185 436 -106 2613 151 14 72 chr3 46758020 46758589 -171278569 - L1MB8 LINE L1 -6 6172 5637 937 105 0 0 chr3 46758597 46758730 -171278428 - L1PA13 LINE L1 -1 6162 6030 7320 141 7 2 chr3 46758730 46759694 -171277464 - L1PA13 LINE L1 -428 5733 4755 180 0 0 0 chr3 46759694 46759714 -171277444 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7320 141 7 2 chr3 46759714 46760380 -171276778 - L1PA13 LINE L1 -1406 4755 4094 672 194 7 21 chr3 46760836 46760980 -171276178 + FLAM_C SINE Alu 2 143 0 1234 140 0 11 chr3 46761015 46761201 -171275957 + AluJb SINE Alu 121 304 -8 186 293 38 47 chr3 46761570 46761676 -171275482 - MIR SINE MIR -126 136 32 412 299 75 85 chr3 46761679 46761973 -171275185 + L2 LINE L2 258 548 -2766 6537 113 35 5 chr3 46761992 46762165 -171274993 + Tigger1 DNA MER2_type 1 167 -2251 234 0 0 0 chr3 46762165 46762191 -171274967 + (TTA)n Simple_repeat Simple_repeat 3 28 0 6537 113 35 5 chr3 46762191 46762964 -171274194 + Tigger1 DNA MER2_type 167 975 -1443 7124 35 8 2 chr3 46762964 46763803 -171273355 - L1PA5 LINE L1 -4 6150 5307 9992 107 23 2 chr3 46763803 46765219 -171271939 + Tigger1 DNA MER2_type 974 2418 0 1951 276 158 24 chr3 46765306 46765788 -171271370 + L2 LINE L2 950 1366 -1948 2242 107 7 7 chr3 46765788 46766097 -171271061 - AluY SINE Alu -2 309 1 1951 276 158 24 chr3 46766097 46766824 -171270334 + L2 LINE L2 1366 2321 -993 813 216 103 27 chr3 46766825 46767042 -171270116 - MLT1B LTR MaLR -2 388 104 1805 171 0 23 chr3 46767042 46767346 -171269812 - AluJo SINE Alu -15 297 1 813 216 103 27 chr3 46767346 46767441 -171269717 - MLT1B LTR MaLR -286 104 18 1447 265 94 28 chr3 46767478 46768053 -171269105 + L2 LINE L2 2404 3041 -272 2227 105 10 0 chr3 46768053 46768347 -171268811 + AluSx SINE Alu 1 297 -15 1447 265 94 28 chr3 46768347 46768640 -171268518 + L2 LINE L2 3041 3313 0 1724 194 54 31 chr3 46769083 46769470 -171267688 - MSTD LTR MaLR 0 396 1 1355 239 103 15 chr3 46769711 46770050 -171267108 - MLT1H LTR MaLR -48 501 133 1625 249 191 14 chr3 46770616 46771314 -171265844 + L2 LINE L2 1615 2435 -879 198 0 0 0 chr3 46771327 46771349 -171265809 + (TC)n Simple_repeat Simple_repeat 2 23 0 315 0 0 0 chr3 46771355 46771390 -171265768 + (CA)n Simple_repeat Simple_repeat 2 36 0 1581 162 24 57 chr3 46771395 46771729 -171265429 - L1MC4a LINE L1 -1874 5934 5612 1187 209 24 10 chr3 46772061 46772357 -171264801 - L1MCa LINE L1 -3530 3034 2735 23962 132 22 51 chr3 46772362 46773707 -171263451 - L1MA3 LINE L1 0 7724 6342 2096 145 0 0 chr3 46773707 46774004 -171263154 - AluSx SINE Alu -15 297 1 23962 132 22 51 chr3 46774004 46774507 -171262651 - L1MA3 LINE L1 -1382 6342 5826 628 228 8 0 chr3 46774507 46774630 -171262528 - FLAM_C SINE Alu -18 125 2 23962 132 22 51 chr3 46774630 46775073 -171262085 - L1MA3 LINE L1 -1898 5826 5372 1968 124 59 3 chr3 46775073 46775363 -171261795 - AluSx SINE Alu -6 306 1 23962 132 22 51 chr3 46775363 46776587 -171260571 - L1MA3 LINE L1 -2352 5372 4115 2039 144 0 3 chr3 46776587 46776885 -171260273 - AluSx SINE Alu -15 297 1 23962 132 22 51 chr3 46776885 46777588 -171259570 - L1MA3 LINE L1 -3609 4115 3393 2216 135 3 0 chr3 46777588 46777891 -171259267 - AluSx SINE Alu -8 304 1 23962 132 22 51 chr3 46777891 46778223 -171258935 - L1MA3 LINE L1 -4331 3393 3053 2215 84 22 0 chr3 46778223 46778533 -171258625 - AluY SINE Alu 0 316 1 2180 110 0 0 chr3 46778536 46778827 -171258331 - AluSx SINE Alu -21 291 1 23962 132 22 51 chr3 46778827 46779251 -171257907 - L1MA3 LINE L1 -4673 3051 2616 1937 179 0 3 chr3 46779251 46779552 -171257606 + AluJb SINE Alu 1 300 -12 23962 132 22 51 chr3 46779552 46781858 -171255300 - L1MA3 LINE L1 -5108 2616 14 1534 115 20 31 chr3 46781856 46781916 -171255242 - L1MCa LINE L1 -4434 2130 2071 * 2479 86 0 0 chr3 46781916 46782220 -171254938 + AluSg SINE Alu 1 304 -6 1534 115 20 31 chr3 46782220 46782453 -171254705 - L1MCa LINE L1 -4493 2071 1879 1785 174 16 72 chr3 46782981 46783150 -171254008 - L1MA4 LINE L1 -17 6283 6106 1636 177 10 43 chr3 46783150 46783450 -171253708 - AluJo SINE Alu -22 290 1 1785 174 16 72 chr3 46783450 46783710 -171253448 - L1MA4 LINE L1 -194 6106 5878 368 174 139 0 chr3 46783683 46783747 -171253411 - L1MCa LINE L1 -5024 1021 941 * 261 0 0 0 chr3 46783747 46783776 -171253382 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 368 174 139 0 chr3 46783776 46783797 -171253361 - L1MCa LINE L1 -5104 941 924 829 317 76 11 chr3 46783987 46784080 -171253078 + MLT1I LTR MaLR 1 86 -323 2218 135 0 0 chr3 46784080 46784391 -171252767 - AluSx SINE Alu -1 311 1 829 317 76 11 chr3 46784391 46784679 -171252479 + MLT1I LTR MaLR 86 407 -2 356 267 133 49 chr3 46784679 46784904 -171252254 + L2 LINE L2 2985 3228 -85 545 320 99 32 chr3 46784940 46785284 -171251874 - LTR16C LTR ERVL -28 463 97 189 261 148 0 chr3 46785382 46785470 -171251688 + L2 LINE L2 3213 3313 0 660 226 141 82 chr3 46785679 46786055 -171251103 + MLT1K LTR MaLR 181 578 -10 209 222 0 19 chr3 46786066 46786120 -171251038 + MIR SINE MIR 156 208 -54 184 308 48 29 chr3 46786875 46786979 -171250179 - MIR SINE MIR -58 150 45 297 0 0 0 chr3 46787069 46787102 -171250056 + (CA)n Simple_repeat Simple_repeat 2 34 0 3873 205 16 33 chr3 46787119 46788161 -171248997 - L1ME1 LINE L1 -6 6160 5135 1995 139 3 13 chr3 46788203 46788527 -171248631 + AluSx SINE Alu 1 312 0 1820 193 0 0 chr3 46788676 46788972 -171248186 + AluJb SINE Alu 1 296 -16 2067 125 14 3 chr3 46789496 46789793 -171247365 - AluSx SINE Alu -10 302 3 396 214 0 0 chr3 46789896 46789980 -171247178 + L1 LINE L1 2887 2970 -3176 533 190 116 0 chr3 46790396 46790517 -171246641 + MER5A DNA MER1_type 1 135 -54 2201 136 0 0 chr3 46790519 46790828 -171246330 - AluSx SINE Alu -3 309 1 338 276 98 49 chr3 46791668 46791893 -171245265 + LTR16C LTR ERVL 256 491 0 221 260 126 39 chr3 46792104 46792231 -171244927 + MIR SINE MIR 12 149 -113 212 256 26 13 chr3 46792310 46792388 -171244770 + MIR3 SINE MIR 116 194 -14 582 272 67 0 chr3 46792447 46792642 -171244516 + MIR SINE MIR 6 213 -49 2324 237 12 12 chr3 46792647 46793140 -171244018 + MLT1H1 LTR MaLR 1 493 -62 406 227 0 0 chr3 46793140 46793261 -171243897 + FLAM_A SINE Alu 44 164 0 464 113 0 2 chr3 46793261 46793331 -171243827 + MLT1H1 LTR MaLR 481 555 0 1860 182 0 0 chr3 46793613 46793904 -171243254 - AluJo SINE Alu -21 291 1 2152 122 3 31 chr3 46793986 46794305 -171242853 - AluSx SINE Alu -2 310 1 33857 86 8 10 chr3 46794577 46800744 -171236414 - L1PA6 LINE L1 -1 6153 3 279 211 53 0 chr3 46800747 46800804 -171236354 + L2 LINE L2 2986 3045 -227 2205 110 0 0 chr3 46800804 46801104 -171236054 - AluSx SINE Alu -12 300 1 183 42 0 0 chr3 46801351 46801375 -171235783 + (CAA)n Simple_repeat Simple_repeat 3 26 0 610 296 83 14 chr3 46801393 46801481 -171235677 - MIR SINE MIR -7 255 175 981 32 16 0 chr3 46801481 46801604 -171235554 - L1PA4 LINE L1 -1 6154 6030 610 296 83 14 chr3 46801604 46801731 -171235427 - MIR SINE MIR -87 175 25 1274 260 27 3 chr3 46802876 46803176 -171233982 + MLT2E LTR ERVL 1 307 -321 1363 288 50 34 chr3 46803320 46803834 -171233324 + MLT1K LTR MaLR 64 614 -1 204 217 17 83 chr3 46803902 46803962 -171233196 - MIR SINE MIR -119 89 34 372 270 102 29 chr3 46804038 46804175 -171232983 - MIR3 SINE MIR -48 160 14 433 280 104 70 chr3 46804437 46804823 -171232335 + L1MC4a LINE L1 5616 6017 -104 237 202 180 11 chr3 46805131 46805220 -171231938 + LTR67 LTR ERVL 400 503 -54 2164 99 10 0 chr3 46805384 46805686 -171231472 - AluSx SINE Alu -7 305 1 1830 214 102 18 chr3 46806326 46806779 -171230379 - LTR16C LTR ERVL 0 491 1 1544 171 12 0 chr3 46807377 46807622 -171229536 - MLT1A1 LTR MaLR 0 365 118 442 255 13 74 chr3 46807688 46807837 -171229321 - MIR3 SINE MIR -64 144 5 1304 191 3 90 chr3 46808430 46808765 -171228393 + AluSq SINE Alu 1 306 -7 907 188 50 0 chr3 46808779 46808939 -171228219 + Tigger3b DNA MER2_type 1 168 -1063 803 143 8 8 chr3 46808944 46809077 -171228081 + AluJo SINE Alu 2 134 -178 5886 125 40 41 chr3 46809079 46810086 -171227072 + Tigger3b DNA MER2_type 174 1181 -1847 1820 111 37 0 chr3 46810086 46810356 -171226802 - AluSx SINE Alu -32 280 1 5886 125 40 41 chr3 46810356 46810407 -171226751 + Tigger3b DNA MER2_type 1181 1231 0 309 287 145 7 chr3 46810467 46810610 -171226548 - MIR SINE MIR -72 136 28 226 186 0 0 chr3 46810758 46810801 -171226357 - MLT1J LTR MaLR 0 542 500 2231 198 102 11 chr3 46810801 46811321 -171225837 - MLT1F1 LTR MaLR 0 567 1 603 224 0 0 chr3 46812685 46812828 -171224330 + (CA)n Simple_repeat Simple_repeat 1 143 0 246 200 318 0 chr3 46813316 46813401 -171223757 - MIR SINE MIR -72 190 79 1214 181 85 71 chr3 46813403 46813768 -171223390 + MLT1A2 LTR MaLR 1 370 -4 243 214 176 46 chr3 46814679 46814710 -171222448 - HAL1b LINE L1 -25 1323 1297 443 18 18 0 chr3 46814710 46814766 -171222392 + (TAGA)n Simple_repeat Simple_repeat 3 59 0 243 214 176 46 chr3 46814766 46814865 -171222293 - HAL1b LINE L1 -51 1297 1176 379 238 40 10 chr3 46815247 46815348 -171221810 + MER46C DNA MER2_type 233 336 -2 209 311 0 40 chr3 46815423 46815497 -171221661 + MIR SINE MIR 169 239 -23 1320 197 69 14 chr3 46816082 46816372 -171220786 - AluJo SINE Alu -6 306 1 357 309 117 19 chr3 46817183 46817345 -171219813 - MER5B DNA MER1_type 0 178 1 2173 172 81 33 chr3 46817558 46818040 -171219118 - MLT1D LTR MaLR 0 505 1 702 285 73 69 chr3 46818147 46818638 -171218520 - MLT1J LTR MaLR -18 493 1 1964 140 0 10 chr3 46818650 46818964 -171218194 + AluJb SINE Alu 1 311 -1 1931 123 0 38 chr3 46819116 46819434 -171217724 - AluSx SINE Alu -6 306 1 1966 132 13 7 chr3 46819440 46819750 -171217408 - AluSx SINE Alu 0 312 1 328 309 84 98 chr3 46819752 46820202 -171216956 - L2 LINE L2 -1 3271 2828 1082 120 54 62 chr3 46820417 46820659 -171216499 + L1MB3 LINE L1 5937 6176 -7 198 0 0 0 chr3 46820659 46820681 -171216477 + (CA)n Simple_repeat Simple_repeat 2 23 0 723 172 16 16 chr3 46820701 46820829 -171216329 - MER5A DNA MER1_type -61 128 1 24 53 0 0 chr3 46821252 46821290 -171215868 + GC_rich Low_complexity Low_complexity 1 38 0 26 30 0 0 chr3 46821489 46821522 -171215636 + GC_rich Low_complexity Low_complexity 1 33 0 27 62 0 0 chr3 46821774 46821822 -171215336 + GC_rich Low_complexity Low_complexity 1 48 0 21 43 0 0 chr3 46822288 46822311 -171214847 + GC_rich Low_complexity Low_complexity 1 23 0 465 268 54 24 chr3 46824128 46824296 -171212862 + MER69A DNA AcHobo 2 174 -3 513 307 11 6 chr3 46824409 46824588 -171212570 - L1ME LINE L1 -371 5750 5571 1005 198 41 0 chr3 46825996 46826193 -171210965 - MER3 DNA MER1_type -1 208 4 393 296 33 28 chr3 46827462 46827777 -171209381 - LTR16B LTR ERVL 0 464 37 183 320 41 31 chr3 46828336 46828433 -171208725 - MIR SINE MIR -9 253 156 1897 200 11 3 chr3 46828437 46828787 -171208371 - MLT1A1 LTR MaLR -12 353 1 321 196 75 105 chr3 46828793 46828926 -171208232 - MIR SINE MIR -105 157 29 1512 127 11 23 chr3 46829498 46829758 -171207400 + L1MA2 LINE L1 6036 6292 -12 2304 81 0 0 chr3 46829762 46830060 -171207098 - AluY SINE Alu -11 300 3 781 288 32 16 chr3 46830426 46830676 -171206482 + MIR SINE MIR 9 262 0 359 238 0 48 chr3 46831664 46831748 -171205410 - MIR SINE MIR -139 123 44 390 332 24 47 chr3 46831975 46832186 -171204972 - MIR SINE MIR -48 214 9 2366 185 68 16 chr3 46832425 46832923 -171204235 - MLT1H LTR MaLR -13 536 13 2376 119 45 54 chr3 46833019 46833284 -171203874 - MER65A LTR ERV1 0 445 184 309 26 0 0 chr3 46833284 46833322 -171203836 + (TG)n Simple_repeat Simple_repeat 2 39 0 2376 119 45 54 chr3 46833322 46833501 -171203657 - MER65A LTR ERV1 -261 184 5 668 298 15 15 chr3 46833598 46833803 -171203355 - MIR SINE MIR -8 254 50 358 206 19 0 chr3 46834585 46834666 -171202492 + MIR SINE MIR 7 91 -117 500 257 26 13 chr3 46835169 46835321 -171201837 + MIR SINE MIR 103 256 -6 2188 112 0 3 chr3 46835377 46835690 -171201468 + AluSx SINE Alu 1 312 0 547 168 314 0 chr3 46835822 46835959 -171201199 - MER5A DNA MER1_type -1 188 9 2394 243 84 41 chr3 46838621 46838968 -171198190 - L1ME3A LINE L1 0 6170 5839 1844 121 7 4 chr3 46838968 46839241 -171197917 - AluSx SINE Alu -7 305 32 2394 243 84 41 chr3 46839241 46839794 -171197364 - L1ME3A LINE L1 -331 5839 5232 885 193 45 0 chr3 46839809 46839985 -171197173 - AluJo SINE Alu -128 184 1 209 171 0 0 chr3 46840409 46840444 -171196714 + CT-rich Low_complexity Low_complexity 1 35 0 329 292 151 49 chr3 46840444 46840958 -171196200 - L2 LINE L2 -9 3263 2687 1789 159 3 7 chr3 46840959 46841267 -171195891 + AluJb SINE Alu 2 308 -4 480 259 109 47 chr3 46841298 46841491 -171195667 + MIR SINE MIR 31 235 -27 1920 127 10 10 chr3 46841567 46841882 -171195276 - AluSx SINE Alu 0 312 1 185 256 0 0 chr3 46841944 46841983 -171195175 + MER5C DNA MER1_type 38 76 -248 2085 125 6 3 chr3 46842043 46842354 -171194804 + AluSx SINE Alu 1 312 0 1413 223 57 7 chr3 46842931 46843316 -171193842 - L1ME2 LINE L1 -7 6157 5756 880 230 31 5 chr3 46843411 46843607 -171193551 - MER3 DNA MER1_type -1 208 8 292 209 192 58 chr3 46843670 46843842 -171193316 - L1ME3 LINE L1 -1 6161 5967 199 267 33 0 chr3 46844261 46844321 -171192837 - L3b LINE CR1 -416 1167 1106 4109 177 56 14 chr3 46844905 46845757 -171191401 - L1MB2 LINE L1 -1 6170 5283 389 241 0 0 chr3 46847179 46847262 -171189896 - L1ME3A LINE L1 -5 6165 6083 248 290 123 58 chr3 46848945 46849100 -171188058 + MIR SINE MIR 10 174 -88 193 220 20 0 chr3 46849655 46849705 -171187453 + L2 LINE L2 3032 3082 -231 509 175 175 0 chr3 46849705 46849819 -171187339 + L1ME2 LINE L1 6012 6145 -19 306 281 233 45 chr3 46849902 46850344 -171186814 + L2 LINE L2 2452 2976 -338 421 255 63 0 chr3 46851120 46851254 -171185904 + MIR3 SINE MIR 44 187 -21 296 316 34 17 chr3 46852996 46853113 -171184045 - MIR SINE MIR -108 154 36 234 247 165 24 chr3 46853746 46853831 -171183327 - MIR3 SINE MIR -15 193 97 584 230 211 33 chr3 46853877 46854090 -171183068 + MIR SINE MIR 2 252 -10 322 277 241 0 chr3 46855561 46855702 -171181456 + MIR SINE MIR 67 241 -21 553 272 100 0 chr3 46856743 46856923 -171180235 - MIR SINE MIR -8 254 57 326 202 193 37 chr3 46857306 46857415 -171179743 - AluJb SINE Alu -168 134 9 2037 128 0 3 chr3 46857711 46858008 -171179150 + AluSx SINE Alu 1 296 -16 2445 127 19 24 chr3 46858012 46858429 -171178729 - L1MB3 LINE L1 -14 6169 5755 291 349 46 62 chr3 46858500 46858695 -171178463 + MIR3 SINE MIR 17 208 0 3021 152 9 62 chr3 46858987 46859566 -171177592 - LTR10A LTR ERV1 -54 555 8 1827 146 3 3 chr3 46860173 46860468 -171176690 - AluJb SINE Alu -11 301 7 528 248 71 35 chr3 46862818 46863016 -171174142 + MIR SINE MIR 48 252 -10 1733 114 85 0 chr3 46864176 46864448 -171172710 - AluSx SINE Alu -17 295 1 372 266 162 79 chr3 46864661 46864885 -171172273 + L2 LINE L2 2414 2661 -653 545 203 39 0 chr3 46864885 46865013 -171172145 - L1MB5 LINE L1 0 6174 6042 372 266 162 79 chr3 46865013 46865029 -171172129 + L2 LINE L2 2661 2674 -640 658 325 98 24 chr3 46865538 46865957 -171171201 + L2 LINE L2 2412 2861 -453 417 297 129 10 chr3 46866007 46866394 -171170764 - L1ME LINE L1 -413 5708 5265 384 303 23 57 chr3 46866698 46866873 -171170285 - L1ME LINE L1 -1103 5043 4875 209 202 279 39 chr3 46870216 46870320 -171166838 + L2 LINE L2 3180 3308 -5 967 239 25 31 chr3 46870603 46870872 -171166286 - L1ME2 LINE L1 -1 6183 5911 382 125 18 0 chr3 46871092 46871148 -171166010 + MER92B LTR ERV1 2 58 -578 2252 96 7 0 chr3 46871408 46871709 -171165449 - AluSx SINE Alu -9 303 1 641 270 122 5 chr3 46873425 46873621 -171163537 - MIR SINE MIR -15 247 29 294 322 141 33 chr3 46873677 46873798 -171163360 + L2 LINE L2 3138 3271 -1 294 167 0 0 chr3 46874248 46874308 -171162850 + (CCCA)n Simple_repeat Simple_repeat 2 61 0 324 309 178 0 chr3 46874342 46874494 -171162664 + MIR SINE MIR 14 192 -70 1003 197 47 19 chr3 46874496 46874912 -171162246 + L1ME3 LINE L1 5675 6151 -11 180 281 62 16 chr3 46875937 46876001 -171161157 - MER5A DNA MER1_type -87 102 36 404 299 35 28 chr3 46877089 46877233 -171159925 - MER103 DNA DNA -2 164 20 1560 143 86 11 chr3 46879219 46879498 -171157660 - AluJb SINE Alu -12 300 1 202 192 0 39 chr3 46880354 46880406 -171156752 + A-rich Low_complexity Low_complexity 5 54 0 1989 100 37 0 chr3 46881148 46881581 -171155577 - AluSg SINE Alu 0 444 1 901 264 18 25 chr3 46881606 46881883 -171155275 + Charlie8 DNA MER1_type 2 276 -2141 286 131 246 0 chr3 46881938 46881999 -171155159 + Charlie8 DNA MER1_type 2341 2416 -1 1761 62 5 0 chr3 46882506 46882730 -171154428 - L1PA4 LINE L1 -1 6154 5930 674 286 100 9 chr3 46883186 46883406 -171153752 - MIR SINE MIR -2 260 21 1826 137 27 10 chr3 46883633 46883932 -171153226 - AluSx SINE Alu -8 304 1 1565 112 25 17 chr3 46884557 46884798 -171152360 + AluJb SINE Alu 38 280 -32 778 171 0 8 chr3 46884839 46884968 -171152190 + FRAM SINE Alu 33 160 -16 634 284 93 17 chr3 46885357 46885593 -171151565 + MIR SINE MIR 2 255 -7 215 163 20 0 chr3 46886492 46886541 -171150617 + T-rich Low_complexity Low_complexity 2 51 0 405 58 0 0 chr3 46887151 46887203 -171149955 + (TG)n Simple_repeat Simple_repeat 2 53 0 2223 103 0 0 chr3 46887853 46888154 -171149004 - AluSx SINE Alu -5 307 7 211 289 0 0 chr3 46888464 46888516 -171148642 - L2 LINE L2 0 3313 3262 387 244 119 42 chr3 46889427 46889595 -171147563 - MIR SINE MIR -74 188 8 1565 181 34 0 chr3 46891527 46891820 -171145338 + AluJo SINE Alu 1 303 -9 238 311 141 37 chr3 46893667 46893802 -171143356 - MIR SINE MIR 0 262 114 21 36 0 0 chr3 46894367 46894395 -171142763 + AT_rich Low_complexity Low_complexity 1 28 0 1154 219 76 0 chr3 46894646 46894934 -171142224 - MER33 DNA MER1_type -11 313 4 368 285 17 70 chr3 46895850 46896022 -171141136 - L3 LINE CR1 -1 1576 1414 377 266 55 0 chr3 46896064 46896192 -171140966 + MIR SINE MIR 2 136 -126 365 169 15 0 chr3 46896209 46896274 -171140884 - Tigger5 DNA MER2_type 0 2323 2258 342 186 0 0 chr3 46896268 46896327 -171140831 + Tigger5 DNA MER2_type 2259 2317 -6 * 454 215 0 0 chr3 46896329 46896408 -171140750 - Tigger5 DNA MER2_type -2244 79 1 260 200 91 0 chr3 46896409 46896464 -171140694 + MIR SINE MIR 195 254 -8 295 357 39 8 chr3 46896524 46896653 -171140505 - L3 LINE CR1 -295 1282 1150 2131 112 10 7 chr3 46896844 46897149 -171140009 - AluSg SINE Alu -4 306 1 240 376 120 0 chr3 46897324 46897441 -171139717 + L3 LINE CR1 702 832 -745 1691 234 33 5 chr3 46897827 46898224 -171138934 - L1ME2 LINE L1 -9 6155 5748 286 293 49 0 chr3 46898224 46898306 -171138852 - MIR SINE MIR -59 203 118 293 291 100 26 chr3 46898400 46898630 -171138528 - L2 LINE L2 -1339 1975 1729 2372 63 3 3 chr3 46899780 46900082 -171137076 - AluY SINE Alu -9 302 1 185 274 54 118 chr3 46900828 46901014 -171136144 - L2 LINE L2 -94 3178 3005 642 237 160 0 chr3 46903343 46903499 -171133659 + MER5A DNA MER1_type 9 189 0 244 404 40 0 chr3 46903789 46903888 -171133270 - MIR SINE MIR -85 123 21 226 189 473 0 chr3 46904144 46904218 -171132940 - L2 LINE L2 -5 3308 3200 489 200 10 0 chr3 46905800 46905900 -171131258 - LTR33A LTR ERVL -5 518 418 702 120 260 0 chr3 46905938 46906088 -171131070 + MER5A DNA MER1_type 1 189 0 1315 172 236 10 chr3 46906135 46906524 -171130634 - LTR50 LTR ERVL -318 477 1 536 240 8 8 chr3 46906565 46906694 -171130464 - L2 LINE L2 -2 3311 3183 182 192 231 0 chr3 46906758 46906810 -171130348 - L2 LINE L2 -30 3242 3179 493 268 16 0 chr3 46908250 46908377 -171128781 - LTR16C LTR ERVL 0 491 363 2088 160 53 25 chr3 46908386 46908779 -171128379 - MLT2D LTR ERVL -8 406 3 1128 220 132 7 chr3 46908783 46909078 -171128080 - LTR16C LTR ERVL -127 364 33 317 304 88 61 chr3 46909560 46909741 -171127417 + MIR3 SINE MIR 17 202 -6 205 161 0 0 chr3 46910550 46910581 -171126577 + polypyrimidine Low_complexity Low_complexity 2 32 0 389 293 0 10 chr3 46910787 46910886 -171126272 + L2 LINE L2 3196 3293 -20 437 298 50 50 chr3 46912373 46912554 -171124604 + MIR SINE MIR 82 262 0 385 167 69 0 chr3 46912555 46912627 -171124531 + MER116 DNA Mariner 4 80 0 1088 117 12 6 chr3 46913332 46913503 -171123655 + MER53 DNA DNA 1 172 -17 1243 273 26 43 chr3 46914979 46915444 -171121714 + MER113 DNA MER1_type? 30 486 -35 1478 198 42 64 chr3 46917030 46917481 -171119677 + L1ME1 LINE L1 5740 6334 0 565 303 33 6 chr3 46918977 46919191 -171117967 - MIR SINE MIR -6 256 5 233 233 0 0 chr3 46919229 46919272 -171117886 - MIR SINE MIR -21 241 199 2083 162 52 14 chr3 46919416 46919836 -171117322 + MER63B DNA MER1_type 1 436 0 312 208 0 0 chr3 46919871 46919943 -171117215 - L1PA16 LINE L1 -16 6150 6079 23 33 0 0 chr3 46921360 46921390 -171115768 + AT_rich Low_complexity Low_complexity 1 30 0 2161 114 0 0 chr3 46921721 46922020 -171115138 + AluSx SINE Alu 1 299 -13 2031 179 207 2 chr3 46922020 46922523 -171114635 - L1MC4 LINE L1 0 8042 7437 1953 258 128 26 chr3 46922976 46924057 -171113101 - L2 LINE L2 -1 3312 2110 1070 167 9 33 chr3 46924290 46924500 -171112658 + MER3 DNA MER1_type 5 209 0 316 325 52 26 chr3 46925105 46925259 -171111899 + MIR SINE MIR 23 180 -82 368 198 331 0 chr3 46925551 46925672 -171111486 - MER5A DNA MER1_type -13 176 16 255 239 36 174 chr3 46926665 46926912 -171110246 - MIR SINE MIR 0 262 50 194 262 49 33 chr3 46926889 46926950 -171110208 + MIR SINE MIR 37 98 -164 * 229 364 45 0 chr3 46927278 46927388 -171109770 - L2 LINE L2 0 3272 3158 616 151 28 0 chr3 46927508 46927614 -171109544 - MER94 DNA DNA -4 130 22 278 274 78 10 chr3 46927621 46927723 -171109435 - L2 LINE L2 -19 3253 3145 183 80 0 0 chr3 46928270 46928295 -171108863 + (CA)n Simple_repeat Simple_repeat 1 25 0 244 267 12 23 chr3 46928389 46928475 -171108683 + MIR SINE MIR 156 240 -22 326 148 19 0 chr3 46928893 46928947 -171108211 - MER33 DNA MER1_type 0 363 309 6234 52 4 4 chr3 46928947 46929709 -171107449 - L1PA6 LINE L1 -6 6148 5387 887 175 171 25 chr3 46929709 46929763 -171107395 - MER33 DNA MER1_type -2310 275 230 2178 149 8 42 chr3 46929763 46930165 -171106993 - MLT1B LTR MaLR 0 390 3 887 175 171 25 chr3 46930165 46930350 -171106808 - MER33 DNA MER1_type -2355 230 1 243 264 48 56 chr3 46931156 46931281 -171105877 - L3 LINE CR1 -157 1420 1297 244 383 0 0 chr3 46931981 46932062 -171105096 + L2 LINE L2 3185 3265 -7 299 187 13 0 chr3 46932108 46932183 -171104975 - L1M4 LINE L1 -1100 5046 4971 206 259 74 83 chr3 46932357 46932465 -171104693 - MER5A DNA MER1_type -72 117 11 225 280 189 15 chr3 46933010 46933142 -171104016 + MER103 DNA DNA 11 165 -1 350 318 144 0 chr3 46934025 46934198 -171102960 + MIR SINE MIR 35 232 -30 292 151 38 0 chr3 46934485 46934538 -171102620 - MER5A DNA MER1_type -1 188 134 765 156 7 0 chr3 46934550 46934685 -171102473 + L1MB3 LINE L1 6021 6156 -27 525 232 72 0 chr3 46934706 46934831 -171102327 - MER5A DNA MER1_type -55 134 1 589 175 21 0 chr3 46935133 46935230 -171101928 - Tigger7 DNA MER2_type 0 2491 2393 * 810 197 79 0 chr3 46935228 46935380 -171101778 - Tigger7 DNA MER2_type -284 266 103 448 199 11 0 chr3 46935397 46935503 -171101655 - L1MD3 LINE L1 -64 7917 6194 322 329 168 20 chr3 46935719 46935868 -171101290 + L3 LINE CR1 1407 1577 0 2340 104 42 31 chr3 46936047 46936402 -171100756 - THE1B LTR MaLR -5 359 1 11315 95 22 8 chr3 46936402 46937959 -171099199 - THE1B-int LTR MaLR 0 1580 1 311 29 0 0 chr3 46937959 46937994 -171099164 - THE1B LTR MaLR 0 355 321 2203 121 48 25 chr3 46938023 46938379 -171098779 - THE1B LTR MaLR 0 364 1 252 243 5 0 chr3 46938389 46938450 -171098708 - L2 LINE L2 -287 2985 2924 1839 159 49 6 chr3 46938588 46938934 -171098224 + MER46B DNA MER2_type 1 236 0 986 164 28 0 chr3 46940485 46940662 -171096496 - MER5A DNA MER1_type 0 189 8 843 304 8 12 chr3 46941347 46941597 -171095561 + MIR SINE MIR 14 262 0 301 340 92 7 chr3 46941956 46942097 -171095061 - MIR SINE MIR -53 209 57 373 109 18 0 chr3 46942124 46942179 -171094979 - U7 snRNA snRNA -6 57 2 797 203 199 74 chr3 46942306 46942668 -171094490 - MLT1G LTR MaLR 0 590 193 548 297 64 47 chr3 46944404 46944640 -171092518 - MIR SINE MIR -1 261 22 1633 117 44 11 chr3 46945590 46945864 -171091294 - AluJb SINE Alu -25 287 5 830 258 134 87 chr3 46948169 46948631 -171088527 - MLT1J LTR MaLR -25 486 3 234 266 8 16 chr3 46949589 46949660 -171087498 + T-rich Low_complexity Low_complexity 3 123 0 541 285 52 12 chr3 46949781 46949979 -171087179 + MIR SINE MIR 4 207 -55 648 310 120 8 chr3 46949990 46950348 -171086810 - L2 LINE L2 -481 2833 2436 326 315 77 7 chr3 46951982 46952125 -171085033 + Charlie8 DNA MER1_type 1 153 -2264 207 309 49 37 chr3 46952276 46952357 -171084801 + MIR SINE MIR 181 262 0 802 220 130 58 chr3 46952994 46953406 -171083752 - MLT1H LTR MaLR 0 549 41 1901 111 0 4 chr3 46953440 46953732 -171083426 + AluSc SINE Alu 21 311 0 532 253 189 11 chr3 46953810 46954215 -171082943 + LTR33 LTR ERVL 1 521 0 21 0 0 0 chr3 46956120 46956141 -171081017 + AT_rich Low_complexity Low_complexity 1 21 0 253 218 26 0 chr3 46956469 46956547 -171080611 + (TCCA)n Simple_repeat Simple_repeat 4 83 0 354 240 312 0 chr3 46956624 46956778 -171080380 - MIR SINE MIR 0 262 61 1720 260 70 8 chr3 46957051 46957536 -171079622 - MER115 DNA AcHobo -29 664 150 275 337 131 6 chr3 46957948 46958123 -171079035 + MIR SINE MIR 31 227 -35 1559 207 68 50 chr3 46958227 46958834 -171078324 - L2 LINE L2 0 3313 2714 757 288 86 16 chr3 46961145 46961517 -171075641 - MLT1J2 LTR MaLR 0 450 53 1214 197 117 51 chr3 46961991 46962023 -171075135 - MLT1A2 LTR MaLR 0 374 346 1665 169 92 0 chr3 46962023 46962337 -171074821 + MER2 DNA MER2_type 1 343 -1 1214 197 117 51 chr3 46962337 46962655 -171074503 - MLT1A2 LTR MaLR -28 346 1 555 225 184 50 chr3 46963475 46963693 -171073465 + MIR SINE MIR 4 250 -12 1030 184 0 0 chr3 46963718 46963881 -171073277 - FAM SINE Alu -12 163 1 834 173 0 20 chr3 46964017 46964167 -171072991 - AluJb SINE Alu -1 311 165 422 227 17 59 chr3 46964877 46964996 -171072162 - L2 LINE L2 0 3272 3159 216 239 22 0 chr3 46966508 46966554 -171070604 + L2 LINE L2 3223 3269 -3 476 257 196 20 chr3 46966622 46966867 -171070291 - MLT1H LTR MaLR -13 536 249 405 273 78 19 chr3 46966923 46967077 -171070081 + MIR SINE MIR 36 198 -64 193 239 0 0 chr3 46967183 46967229 -171069929 - L2 LINE L2 -339 2974 2929 330 274 0 12 chr3 46967365 46967449 -171069709 - L2 LINE L2 0 3313 3231 1403 241 113 33 chr3 46968073 46968562 -171068596 - MLT1H LTR MaLR 0 549 22 249 289 258 0 chr3 46968630 46968727 -171068431 + MIR SINE MIR 127 248 -14 218 293 80 0 chr3 46969100 46969175 -171067983 - L2 LINE L2 -2 3311 3231 2425 137 40 21 chr3 46970690 46971114 -171066044 - MSTB1 LTR MaLR 0 432 1 216 0 0 0 chr3 46971187 46971211 -171065947 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 216 359 97 7 chr3 46971235 46971380 -171065778 - L2 LINE L2 -5 3308 3151 203 225 0 28 chr3 46971468 46971539 -171065619 + T-rich Low_complexity Low_complexity 2 70 0 571 319 43 29 chr3 46971661 46971871 -171065287 - MIR SINE MIR -49 213 1 1833 170 42 0 chr3 46972103 46972433 -171064725 - MER2 DNA MER2_type 0 344 1 228 328 0 0 chr3 46972677 46972738 -171064420 - MIR SINE MIR -58 150 90 226 180 49 49 chr3 46973050 46973111 -171064047 + L1M4 LINE L1 775 835 -5707 243 336 45 30 chr3 46973873 46974007 -171063151 - L2 LINE L2 -60 3253 3118 651 284 110 16 chr3 46974058 46974368 -171062790 - L2 LINE L2 -339 2975 2637 366 266 93 26 chr3 46974397 46974561 -171062597 + MIR SINE MIR 41 211 -51 607 201 140 0 chr3 46975245 46975409 -171061749 + MER3 DNA MER1_type 23 209 0 863 184 0 39 chr3 46975892 46976071 -171061087 - FRAM SINE Alu -8 168 1 182 361 63 38 chr3 46978212 46978370 -171058788 + L2 LINE L2 3110 3271 -1 1315 173 71 23 chr3 46978492 46978758 -171058400 - MLT1G LTR MaLR -2 588 310 406 252 35 9 chr3 46978775 46978890 -171058268 - MLT1G LTR MaLR -472 123 6 353 264 70 31 chr3 46980296 46980425 -171056733 - L2 LINE L2 -1359 1955 1822 1934 185 80 13 chr3 46981100 46981576 -171055582 - Charlie4a DNA MER1_type 0 508 1 44558 42 4 0 chr3 46981876 46988000 -171049158 - L1PA4 LINE L1 0 6155 9 775 174 106 19 chr3 46988249 46988410 -171048748 - LTR16A1 LTR ERVL -20 437 263 1228 214 134 81 chr3 46988483 46989103 -171048055 - MLT1E1 LTR MaLR -1 653 1 501 306 62 26 chr3 46989347 46989540 -171047618 - MIR SINE MIR -33 229 30 2375 117 31 25 chr3 46989872 46990232 -171046926 + THE1B LTR MaLR 3 364 0 21 71 0 0 chr3 46991006 46991048 -171046110 + AT_rich Low_complexity Low_complexity 1 42 0 1747 68 0 13 chr3 46991051 46991285 -171045873 - AluY SINE Alu -80 231 1 1851 117 43 7 chr3 46991457 46991739 -171045419 + AluSx SINE Alu 1 292 -20 32 0 0 0 chr3 46991804 46991836 -171045322 + AT_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr3 46992485 46992511 -171044647 + AT_rich Low_complexity Low_complexity 1 26 0 432 37 0 0 chr3 46992557 46992611 -171044547 + (TG)n Simple_repeat Simple_repeat 2 55 0 198 0 0 0 chr3 46993095 46993117 -171044041 + (T)n Simple_repeat Simple_repeat 1 22 0 228 401 19 0 chr3 46993288 46993445 -171043713 + L2 LINE L2 2550 2709 -605 2067 117 10 0 chr3 46993491 46993798 -171043360 - AluSx SINE Alu -2 310 1 324 310 157 28 chr3 46994012 46994267 -171042891 + L2 LINE L2 2966 3253 -19 262 283 28 128 chr3 46995190 46995274 -171041884 + MIR SINE MIR 71 129 -133 1484 149 30 80 chr3 46995274 46995575 -171041583 + AluJo SINE Alu 6 291 -21 262 283 28 128 chr3 46995575 46995670 -171041488 + MIR SINE MIR 129 232 -30 255 265 143 0 chr3 46996652 46996750 -171040408 + L1MC/D LINE L1 5782 5893 -1915 249 256 156 38 chr3 46997322 46997482 -171039676 + MIR SINE MIR 74 252 -10 477 269 30 8 chr3 46997858 46997992 -171039166 + MIR SINE MIR 70 206 -56 237 242 150 12 chr3 46998270 46998411 -171038747 + MIR3 SINE MIR 15 180 -64 425 242 0 0 chr3 46999192 46999287 -171037871 - LTR16A1 LTR ERVL -2 455 361 775 215 45 36 chr3 46999333 46999556 -171037602 - LTR16A1 LTR ERVL -178 279 55 1211 271 83 93 chr3 47000824 47001977 -171035181 + HAL1 LINE L1 760 1901 -606 2513 158 29 47 chr3 47002118 47002824 -171034334 - Tigger5 DNA MER2_type 0 2323 2 3877 175 25 40 chr3 47002863 47003923 -171033235 + L1M1 LINE L1 3331 4389 -3176 461 124 26 262 chr3 47004338 47004407 -171032751 + MER5A DNA MER1_type 7 91 -98 261 0 0 0 chr3 47004407 47004436 -171032722 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 461 124 26 262 chr3 47004436 47004473 -171032685 + MER5A DNA MER1_type 91 135 -54 10317 29 0 0 chr3 47004473 47006434 -171030724 - L1PA4 LINE L1 -3 6152 4193 461 124 26 262 chr3 47006434 47006497 -171030661 + MER5A DNA MER1_type 135 114 -75 2060 127 7 0 chr3 47006497 47006810 -171030348 - AluSx SINE Alu 0 315 1 461 124 26 262 chr3 47006810 47006869 -171030289 + MER5A DNA MER1_type 113 184 -5 433 237 6 89 chr3 47006943 47007112 -171030046 + HAL1 LINE L1 2245 2399 -108 180 0 0 0 chr3 47007289 47007309 -171029849 + (A)n Simple_repeat Simple_repeat 1 20 0 3003 195 45 3 chr3 47008920 47009519 -171027639 + MLT1E2 LTR MaLR 1 624 -2 839 152 218 0 chr3 47009953 47010118 -171027040 + MER1B DNA MER1_type 1 201 -96 549 195 0 44 chr3 47010096 47010209 -171026949 + MER1B DNA MER1_type 222 329 0 * 230 275 14 0 chr3 47010384 47010453 -171026705 + L2 LINE L2 2542 2611 -703 694 322 34 39 chr3 47010599 47010776 -171026382 + L2 LINE L2 2899 3075 -197 1795 143 13 36 chr3 47010776 47011077 -171026081 - AluJb SINE Alu -18 294 1 694 322 34 39 chr3 47011077 47011256 -171025902 + L2 LINE L2 3075 3253 -19 1413 207 56 7 chr3 47013113 47013418 -171023740 + L1PB4 LINE L1 5825 6144 -12 1978 113 28 0 chr3 47014123 47014407 -171022751 + AluSx SINE Alu 1 292 -20 1165 169 38 5 chr3 47014964 47015177 -171021981 + MER58A DNA MER1_type 1 220 -4 341 181 145 0 chr3 47016096 47016179 -171020979 - MLT1G1 LTR MaLR 0 595 501 4600 152 10 71 chr3 47016191 47017123 -171020035 - L1MA9 LINE L1 -43 6269 5395 637 182 0 33 chr3 47017118 47017188 -171019970 + L1M2 LINE L1 2394 2460 -4389 * 1901 145 0 17 chr3 47017188 47017485 -171019673 + AluJb SINE Alu 10 301 -11 637 182 0 33 chr3 47017485 47017535 -171019623 + L1M2 LINE L1 2460 2510 -4339 2547 225 57 47 chr3 47017535 47018758 -171018400 + L1M1 LINE L1 2999 4264 -3301 1180 244 207 21 chr3 47018777 47019207 -171017951 - MLT1G1 LTR MaLR -82 513 4 2183 103 7 0 chr3 47019262 47019565 -171017593 - AluSq SINE Alu 0 305 1 197 273 0 39 chr3 47019752 47019829 -171017329 - MIR SINE MIR -111 151 78 436 280 13 32 chr3 47020899 47021056 -171016102 - MER69A DNA AcHobo -1 176 23 341 339 18 12 chr3 47022159 47022324 -171014834 + HAL1b LINE L1 486 651 -697 273 116 203 58 chr3 47022924 47022993 -171014165 + MER116 DNA Mariner 1 79 -1 387 0 0 0 chr3 47023025 47023068 -171014090 + (CA)n Simple_repeat Simple_repeat 1 43 0 30147 95 9 5 chr3 47023532 47028709 -171008449 - L1PA7 LINE L1 -2 6152 962 348 24 0 0 chr3 47028818 47028859 -171008299 + (CA)n Simple_repeat Simple_repeat 2 42 0 1055 274 173 31 chr3 47029520 47029966 -171007192 - MLT1H LTR MaLR -17 532 24 1708 144 8 4 chr3 47030958 47031221 -171005937 + AluJb SINE Alu 1 264 -48 21 0 0 0 chr3 47031228 47031249 -171005909 + AT_rich Low_complexity Low_complexity 1 21 0 670 212 35 12 chr3 47032622 47032792 -171004366 + MIR SINE MIR 73 246 -16 309 260 58 0 chr3 47032806 47032910 -171004248 - MIR SINE MIR -64 198 89 2032 102 81 0 chr3 47033256 47033539 -171003619 - AluSp SINE Alu -7 306 1 2314 103 0 7 chr3 47033809 47034111 -171003047 - AluSq SINE Alu -13 300 1 2069 120 10 17 chr3 47034292 47034591 -171002567 - AluSq SINE Alu -16 297 1 264 276 195 8 chr3 47034839 47034962 -171002196 - L2 LINE L2 -1 3271 3126 427 196 112 0 chr3 47035042 47035149 -171002009 - LTR16C LTR ERVL -1 490 372 1014 247 55 12 chr3 47035178 47035633 -171001525 - MLT1H LTR MaLR 0 549 41 380 284 125 68 chr3 47035719 47035895 -171001263 - LTR16C LTR ERVL -237 254 69 372 248 231 31 chr3 47037975 47038269 -170998889 + LTR16A1 LTR ERVL 5 357 -100 1323 215 37 0 chr3 47039234 47039532 -170997626 + Charlie4a DNA MER1_type 1 309 -199 2920 82 0 0 chr3 47041017 47041381 -170995777 + THE1B LTR MaLR 1 364 0 23 68 0 0 chr3 47041611 47041655 -170995503 + AT_rich Low_complexity Low_complexity 1 44 0 854 269 183 12 chr3 47042139 47042571 -170994587 + LTR33A LTR ERVL 18 523 0 252 318 66 33 chr3 47042574 47042725 -170994433 + MIR3 SINE MIR 50 205 -3 1085 267 40 13 chr3 47044010 47044313 -170992845 + LTR16C LTR ERVL 181 491 0 2364 104 0 0 chr3 47044560 47044858 -170992300 - AluSc SINE Alu -11 298 1 609 226 89 11 chr3 47045004 47045194 -170991964 - MER33 DNA MER1_type -115 209 5 589 182 217 61 chr3 47045185 47045383 -170991775 - LTR16C LTR ERVL -189 302 74 * 272 179 285 26 chr3 47046449 47046600 -170990558 + MIR3 SINE MIR 17 206 -2 1419 231 23 12 chr3 47046839 47047185 -170989973 - L1M3 LINE L1 -376 5795 5446 294 300 9 9 chr3 47048288 47048398 -170988760 + MIR3 SINE MIR 56 165 -43 302 276 78 88 chr3 47048566 47048849 -170988309 - L2 LINE L2 -8 3305 3026 193 322 41 25 chr3 47048942 47049063 -170988095 + MIR SINE MIR 109 231 -31 449 230 96 7 chr3 47049955 47050090 -170987068 - LTR67 LTR ERVL 0 557 411 231 253 80 40 chr3 47050262 47050412 -170986746 - LTR67 LTR ERVL -399 158 3 410 298 48 5 chr3 47050584 47050772 -170986386 + L2 LINE L2 1280 1475 -1839 3621 266 156 17 chr3 47050792 47052557 -170984601 + L2 LINE L2 1280 3295 -18 322 276 90 14 chr3 47052596 47052813 -170984345 - MIR3 SINE MIR -26 236 7 1859 119 31 7 chr3 47053485 47053778 -170983380 - AluSx SINE Alu -12 300 1 343 340 45 13 chr3 47054952 47055108 -170982050 - L1ME LINE L1 -310 5811 5651 487 211 81 96 chr3 47055219 47055480 -170981678 - LTR16A1 LTR ERVL -54 403 147 838 299 84 31 chr3 47056798 47057179 -170979979 - LTR16C LTR ERVL -2 489 89 685 209 0 7 chr3 47057816 47058097 -170979061 + (TGGG)n Simple_repeat Simple_repeat 1 278 0 373 348 92 0 chr3 47058861 47059002 -170978156 - L2 LINE L2 -16 3256 3103 332 284 115 79 chr3 47059763 47060179 -170976979 - LTR16C LTR ERVL -2 489 59 381 264 140 75 chr3 47060366 47060658 -170976500 - MER102b DNA MER1_type -28 313 3 297 275 36 34 chr3 47061002 47061156 -170976002 + MIR SINE MIR 19 168 -40 288 0 0 0 chr3 47061426 47061458 -170975700 + (TG)n Simple_repeat Simple_repeat 2 33 0 535 300 66 14 chr3 47063896 47064183 -170972975 - LTR16A1 LTR ERVL 0 457 156 544 277 82 86 chr3 47064760 47065259 -170971899 - MLT1J LTR MaLR -3 508 12 376 317 132 24 chr3 47065546 47065751 -170971407 - L3 LINE CR1 -362 1215 989 344 189 28 0 chr3 47065850 47065933 -170971225 + MER5A DNA MER1_type 4 88 -101 292 320 29 0 chr3 47066216 47066319 -170970839 + L2 LINE L2 1886 1991 -1323 387 0 0 0 chr3 47066321 47066364 -170970794 + (TTA)n Simple_repeat Simple_repeat 3 45 0 6877 54 6 6 chr3 47066367 47067550 -170969608 - L1PA6 LINE L1 -20 6134 4950 1713 224 64 7 chr3 47067545 47067996 -170969162 - L1ME LINE L1 -362 5802 5326 * 2371 259 162 31 chr3 47067996 47068990 -170968168 + L2 LINE L2 1984 2847 -466 1917 134 10 3 chr3 47068990 47069289 -170967869 - AluSx SINE Alu -11 301 1 2371 259 162 31 chr3 47069289 47069371 -170967787 + L2 LINE L2 2847 2917 -396 1744 141 25 7 chr3 47069371 47069654 -170967504 - AluJb SINE Alu -24 288 1 2371 259 162 31 chr3 47069654 47069746 -170967412 + L2 LINE L2 2917 3313 0 1371 274 57 27 chr3 47070288 47070693 -170966465 - LTR16C LTR ERVL 0 491 75 396 274 41 61 chr3 47071209 47071356 -170965802 - MIR SINE MIR -65 143 1 257 250 74 28 chr3 47072015 47072123 -170965035 + LTR16A1 LTR ERVL 345 457 0 253 332 80 16 chr3 47072505 47072692 -170964466 - L1P LINE L1 -2344 3802 3604 655 308 51 5 chr3 47072732 47072946 -170964212 - MIR SINE MIR 0 262 39 1472 238 139 23 chr3 47077028 47077502 -170959656 - MLT1H LTR MaLR -20 529 1 937 197 39 11 chr3 47077529 47077707 -170959451 + MER20 DNA MER1_type 1 183 -36 251 95 0 48 chr3 47077707 47077749 -170959409 + MER20 DNA MER1_type 144 183 -36 * 278 102 0 41 chr3 47077742 47077791 -170959367 + MER20 DNA MER1_type 137 183 -36 278 102 0 41 chr3 47077784 47077833 -170959325 + MER20 DNA MER1_type 137 183 -36 278 102 0 41 chr3 47077826 47077875 -170959283 + MER20 DNA MER1_type 137 183 -36 278 102 0 41 chr3 47077868 47077917 -170959241 + MER20 DNA MER1_type 137 183 -36 278 102 0 41 chr3 47077910 47077959 -170959199 + MER20 DNA MER1_type 137 183 -36 278 102 0 41 chr3 47077952 47078001 -170959157 + MER20 DNA MER1_type 137 183 -36 278 102 0 41 chr3 47077994 47078043 -170959115 + MER20 DNA MER1_type 137 183 -36 278 102 0 41 chr3 47078036 47078085 -170959073 + MER20 DNA MER1_type 137 183 -36 278 102 0 41 chr3 47078078 47078127 -170959031 + MER20 DNA MER1_type 137 183 -36 278 102 0 41 chr3 47078120 47078169 -170958989 + MER20 DNA MER1_type 137 183 -36 278 102 0 41 chr3 47078162 47078211 -170958947 + MER20 DNA MER1_type 137 183 -36 * 440 155 12 24 chr3 47078204 47078288 -170958870 + MER20 DNA MER1_type 137 219 0 380 214 41 110 chr3 47078465 47078610 -170958548 + MIR SINE MIR 2 136 -126 474 303 8 0 chr3 47078640 47078759 -170958399 + MIR SINE MIR 116 235 -27 815 107 0 0 chr3 47079417 47079529 -170957629 + AluSp/q SINE Alu 169 280 -33 459 285 89 0 chr3 47079727 47079885 -170957273 - MIR SINE MIR -89 173 2 409 224 60 17 chr3 47080189 47080305 -170956853 + MER94 DNA DNA 14 134 0 908 202 124 30 chr3 47080473 47080706 -170956452 - MLT1F1 LTR MaLR 0 567 313 907 252 34 53 chr3 47080764 47081030 -170956128 - MLT1F1 LTR MaLR -240 327 67 1358 182 0 0 chr3 47081030 47081266 -170955892 - AluJo SINE Alu -76 236 1 420 133 0 0 chr3 47081266 47081326 -170955832 - MLT1F1 LTR MaLR -503 64 5 200 208 0 75 chr3 47081353 47081406 -170955752 + MIR SINE MIR 188 236 -26 508 270 76 38 chr3 47082042 47082279 -170954879 - MLT1K LTR MaLR -13 575 330 187 301 82 0 chr3 47082475 47082548 -170954610 - MIR SINE MIR -62 146 68 479 286 48 37 chr3 47083612 47083801 -170953357 + MIR SINE MIR 2 192 -70 632 219 67 6 chr3 47084188 47084366 -170952792 + MER5A DNA MER1_type 1 189 0 476 258 104 41 chr3 47084437 47084658 -170952500 + MIR SINE MIR 22 256 -6 228 256 51 13 chr3 47084828 47084906 -170952252 - MIR SINE MIR -67 195 115 394 245 147 35 chr3 47085428 47085571 -170951587 - LTR16A1 LTR ERVL 0 457 299 1790 148 180 11 chr3 47086944 47087310 -170949848 - MSTA LTR MaLR 0 428 1 334 320 25 16 chr3 47088138 47088260 -170948898 + MER5A DNA MER1_type 59 181 -8 302 269 99 43 chr3 47088260 47088401 -170948757 - MER5B DNA MER1_type -4 174 26 189 244 0 0 chr3 47088525 47088566 -170948592 + MER5B DNA MER1_type 138 178 0 419 322 34 0 chr3 47089151 47089297 -170947861 + LTR16C LTR ERVL 97 247 -244 296 256 0 24 chr3 47089309 47089391 -170947767 + LTR16C LTR ERVL 388 467 -24 413 88 184 9 chr3 47089613 47089701 -170947457 - MER5A DNA MER1_type -80 109 4 1693 172 20 3 chr3 47090662 47090964 -170946194 - AluJo SINE Alu -5 307 1 474 299 73 29 chr3 47091432 47091778 -170945380 + L2 LINE L2 2647 3051 -221 4584 186 18 21 chr3 47091842 47092884 -170944274 - L1MB8 LINE L1 -2 6176 5134 1662 187 0 10 chr3 47092884 47093218 -170943940 - AluSx SINE Alu 0 312 1 4584 186 18 21 chr3 47093218 47093250 -170943908 - L1MB8 LINE L1 -1044 5134 5103 2128 95 0 7 chr3 47094061 47094355 -170942803 - AluSq SINE Alu -21 292 1 2166 87 0 13 chr3 47147194 47147493 -170889665 - AluSg SINE Alu -15 295 1 351 60 0 0 chr3 47147782 47147832 -170889326 + (TG)n Simple_repeat Simple_repeat 1 50 0 267 259 19 83 chr3 47147858 47147966 -170889192 - L2 LINE L2 -35 3237 3137 791 193 6 30 chr3 47149286 47149452 -170887706 + MLT1D LTR MaLR 344 505 0 21 36 0 0 chr3 47150428 47150456 -170886702 + AT_rich Low_complexity Low_complexity 1 28 0 248 265 0 72 chr3 47151189 47151272 -170885886 - MIR SINE MIR -92 116 40 21 0 0 0 chr3 47151605 47151626 -170885532 + AT_rich Low_complexity Low_complexity 1 21 0 311 207 45 152 chr3 47152103 47152301 -170884857 + L2 LINE L2 3096 3272 0 2243 170 99 2 chr3 47152655 47153079 -170884079 - MLT1C LTR MaLR 0 467 3 579 293 110 45 chr3 47153462 47154317 -170882841 + L1ME4a LINE L1 564 1497 -4813 916 192 0 17 chr3 47154381 47154558 -170882600 + AluJb SINE Alu 137 310 -2 2098 236 195 30 chr3 47154565 47155656 -170881502 + L1ME4a LINE L1 3563 4833 -1296 1946 162 3 3 chr3 47156094 47156396 -170880762 - AluJb SINE Alu -10 302 1 446 239 192 0 chr3 47156439 47156569 -170880589 + MIR SINE MIR 96 250 -12 1844 107 4 15 chr3 47157397 47157659 -170879499 - AluSq SINE Alu -54 259 1 2188 118 0 25 chr3 47158915 47159236 -170877922 - AluSq SINE Alu 0 313 1 1115 208 42 13 chr3 47159254 47159490 -170877668 - MIR SINE MIR -7 255 13 1020 271 96 28 chr3 47160526 47160995 -170876163 + L1ME4a LINE L1 5341 5841 -263 532 254 177 13 chr3 47162938 47163170 -170873988 - LTR33 LTR ERVL -2 519 250 525 219 90 19 chr3 47163205 47163360 -170873798 - LTR33 LTR ERVL -355 166 1 217 272 96 37 chr3 47163368 47163504 -170873654 - MIR3 SINE MIR -50 158 15 281 285 163 45 chr3 47164389 47164610 -170872548 - L2 LINE L2 -478 2836 2590 186 308 58 29 chr3 47164938 47165042 -170872116 - L3 LINE CR1 -143 1434 1328 210 246 88 18 chr3 47166452 47166509 -170870649 + MER91C DNA MER1_type 49 109 -31 200 222 0 0 chr3 47167127 47167163 -170869995 - MIR SINE MIR -77 131 96 599 262 121 42 chr3 47167203 47167608 -170869550 + MLT1J LTR MaLR 41 477 -34 214 262 24 60 chr3 47167634 47167718 -170869440 - MIR SINE MIR -153 109 29 254 262 58 10 chr3 47168304 47168319 -170868839 + L1ME LINE L1 5798 5811 -310 2193 125 7 0 chr3 47168319 47168623 -170868535 + AluSx SINE Alu 1 306 -6 254 262 58 10 chr3 47168623 47168710 -170868448 + L1ME LINE L1 5811 5905 -216 308 266 51 0 chr3 47169364 47169443 -170867715 + MIR SINE MIR 87 169 -93 647 260 45 7 chr3 47169481 47169635 -170867523 - MIR SINE MIR -100 162 3 705 272 161 32 chr3 47170155 47170783 -170866375 + L2 LINE L2 2170 3313 0 252 207 61 61 chr3 47170824 47170906 -170866252 + MIR SINE MIR 181 262 0 371 218 13 0 chr3 47170917 47170995 -170866163 + MER116 DNA Mariner 2 80 0 258 246 33 0 chr3 47172372 47172433 -170864725 - MIR3 SINE MIR -4 204 142 1744 176 3 16 chr3 47172573 47172880 -170864278 + AluJb SINE Alu 1 303 -9 233 306 124 16 chr3 47173207 47173328 -170863830 + L2 LINE L2 3160 3293 -20 507 144 56 0 chr3 47173527 47173617 -170863541 - L1ME2 LINE L1 0 6164 6070 3033 240 73 52 chr3 47173686 47175003 -170862155 + L1ME LINE L1 34 1450 -4811 1593 153 0 91 chr3 47175003 47175323 -170861835 + AluJo SINE Alu 1 291 -21 3033 240 73 52 chr3 47175323 47175382 -170861776 + L1ME LINE L1 1450 1506 -4755 270 306 146 25 chr3 47176577 47176787 -170860371 - MIR3 SINE MIR -11 251 15 262 191 0 0 chr3 47177011 47177058 -170860100 + MIR SINE MIR 216 262 0 516 243 110 46 chr3 47177068 47177241 -170859917 - MIR SINE MIR -49 213 30 339 267 102 11 chr3 47177253 47177429 -170859729 + L1MC4 LINE L1 5701 5892 -1916 229 239 0 0 chr3 47177494 47177540 -170859618 + L1MC4 LINE L1 6658 6703 -1339 255 192 232 0 chr3 47178901 47179000 -170858158 - HAL1 LINE L1 -116 2391 2270 2115 266 49 20 chr3 47179308 47180065 -170857093 - HAL1 LINE L1 -689 1818 1040 22 35 0 0 chr3 47180365 47180394 -170856764 + AT_rich Low_complexity Low_complexity 1 29 0 695 251 57 65 chr3 47181717 47181980 -170855178 - MIR SINE MIR 0 262 2 451 354 33 22 chr3 47182463 47182644 -170854514 + MER5A DNA MER1_type 7 189 0 301 312 149 0 chr3 47182728 47182869 -170854289 + MIR3 SINE MIR 39 200 -8 749 270 164 22 chr3 47184894 47185393 -170851765 - L1ME4a LINE L1 -12 6109 5530 1223 267 64 9 chr3 47185450 47185870 -170851288 + L1M4 LINE L1 3278 3720 -2426 829 189 39 7 chr3 47185871 47186024 -170851134 - Charlie4 DNA MER1_type -1784 177 20 2109 104 0 37 chr3 47186781 47186944 -170850214 - AluSx SINE Alu -24 288 139 2522 73 0 0 chr3 47186944 47187244 -170849914 - AluY SINE Alu -11 300 1 2109 104 0 37 chr3 47187244 47187379 -170849779 - AluSx SINE Alu -173 139 1 385 274 86 34 chr3 47187679 47187854 -170849304 - L1ME3A LINE L1 -223 5947 5764 2279 113 0 0 chr3 47187857 47188158 -170849000 - AluSx SINE Alu -11 301 1 189 107 0 0 chr3 47188355 47188383 -170848775 + (T)n Simple_repeat Simple_repeat 1 28 0 453 343 28 0 chr3 47188418 47188596 -170848562 + LTR67 LTR ERVL 375 557 0 574 240 40 40 chr3 47189090 47189265 -170847893 + MIR SINE MIR 30 204 -58 249 213 88 62 chr3 47189398 47189478 -170847680 + L2 LINE L2 3189 3270 -2 501 286 134 7 chr3 47189489 47189718 -170847440 - MIR SINE MIR 0 262 8 204 355 59 7 chr3 47189721 47189873 -170847285 - L2 LINE L2 -223 3049 2890 1831 212 50 58 chr3 47190889 47191251 -170845907 + L1MC1 LINE L1 4817 5180 -986 3777 153 75 20 chr3 47191251 47191282 -170845876 + L1MB3 LINE L1 5447 5475 -708 207 0 0 0 chr3 47191282 47191305 -170845853 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3777 153 75 20 chr3 47191305 47191394 -170845764 + L1MB3 LINE L1 5475 5558 -625 1943 155 200 0 chr3 47191394 47191749 -170845409 + MSTB LTR MaLR 1 426 0 3777 153 75 20 chr3 47191749 47192285 -170844873 + L1MB3 LINE L1 5558 6146 -37 2370 87 0 0 chr3 47192285 47192574 -170844584 - AluSg SINE Alu -13 297 9 3777 153 75 20 chr3 47192574 47192606 -170844552 + L1MB3 LINE L1 6146 6175 -8 1831 212 50 58 chr3 47192606 47193018 -170844140 + L1MC1 LINE L1 5180 5580 -586 557 187 37 87 chr3 47193001 47193152 -170844006 + L1ME1 LINE L1 6023 6121 -45 * 1755 142 10 17 chr3 47193152 47193447 -170843711 - AluJb SINE Alu -19 293 1 557 187 37 87 chr3 47193447 47193489 -170843669 + L1ME1 LINE L1 6121 6164 -2 2257 74 3 3 chr3 47194656 47194962 -170842196 - AluSc SINE Alu 0 306 1 3143 238 71 32 chr3 47195765 47196539 -170840619 + L1MD1 LINE L1 9 890 -5650 2180 114 10 3 chr3 47196539 47196845 -170840313 + AluSc SINE Alu 1 308 -1 3143 238 71 32 chr3 47196845 47197200 -170839958 + L1MD1 LINE L1 890 1230 -5310 950 149 5 67 chr3 47197200 47197395 -170839763 + AluJb SINE Alu 87 269 -43 1853 168 62 46 chr3 47197395 47197848 -170839310 + L1MD1 LINE L1 1252 1711 -4829 5208 132 9 6 chr3 47197848 47198629 -170838529 + L1MC1 LINE L1 5551 6333 0 8071 224 54 23 chr3 47198632 47200052 -170837106 + L1MD1 LINE L1 3324 4855 -1768 1233 142 54 0 chr3 47200052 47200257 -170836901 + L1MA5A LINE L1 6076 6291 -6 8071 224 54 23 chr3 47200257 47201317 -170835841 + L1MD1 LINE L1 4855 5880 -743 826 76 38 38 chr3 47201317 47201447 -170835711 + L1MA4A LINE L1 6171 6302 -1 1086 204 56 56 chr3 47201447 47201766 -170835392 + L1MD2 LINE L1 6029 6347 -12 4333 162 21 5 chr3 47201767 47202522 -170834636 + L1MD1 LINE L1 5870 6636 0 507 277 103 46 chr3 47203028 47203378 -170833780 - L1MC4a LINE L1 -1812 5996 5627 287 276 26 13 chr3 47203484 47203560 -170833598 + LTR67 LTR ERVL 96 172 -385 * 288 283 107 43 chr3 47203524 47203711 -170833447 + MLT1L LTR MaLR 196 394 -221 405 245 72 22 chr3 47203741 47203880 -170833278 + MLT1L LTR MaLR 466 611 -4 241 352 0 0 chr3 47204026 47204151 -170833007 - L1MC4a LINE L1 -758 5404 5280 236 187 55 88 chr3 47204441 47204532 -170832626 - MIR SINE MIR -55 207 120 22 35 0 0 chr3 47204558 47204587 -170832571 + AT_rich Low_complexity Low_complexity 1 29 0 30 100 0 0 chr3 47204595 47204695 -170832463 + AT_rich Low_complexity Low_complexity 1 100 0 218 198 52 21 chr3 47207205 47207301 -170829857 + (CGCGG)n Simple_repeat Simple_repeat 3 101 0 23 40 0 0 chr3 47207317 47207342 -170829816 + GC_rich Low_complexity Low_complexity 1 25 0 252 224 0 13 chr3 47207539 47207615 -170829543 + GA-rich Low_complexity Low_complexity 1 75 0 32 26 0 0 chr3 47207715 47207754 -170829404 + GC_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr3 47210598 47210621 -170826537 + AT_rich Low_complexity Low_complexity 1 23 0 381 189 11 33 chr3 47210728 47210818 -170826340 - L2 LINE L2 -4 3309 3222 25 65 0 0 chr3 47211116 47211162 -170825996 + AT_rich Low_complexity Low_complexity 1 46 0 2025 119 0 0 chr3 47211190 47211502 -170825656 - AluSx SINE Alu 0 312 1 362 294 274 10 chr3 47212016 47212315 -170824843 - L2 LINE L2 -498 2816 2439 212 157 10 78 chr3 47212472 47212574 -170824584 + (TCTCTG)n Simple_repeat Simple_repeat 4 98 0 219 219 302 21 chr3 47212845 47212941 -170824217 - L2 LINE L2 -11 3302 3180 2166 102 3 7 chr3 47214000 47214305 -170822853 + AluSx SINE Alu 1 304 -8 1888 128 20 3 chr3 47215835 47216139 -170821019 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr3 47216641 47216662 -170820496 + AT_rich Low_complexity Low_complexity 1 21 0 759 278 118 8 chr3 47217237 47217482 -170819676 - MLT1G1 LTR MaLR -2 593 322 2789 158 41 59 chr3 47217495 47217976 -170819182 + MER74A LTR ERVL 3 474 -84 1921 116 10 23 chr3 47217976 47218278 -170818880 - AluSx SINE Alu -14 298 1 2789 158 41 59 chr3 47218278 47218352 -170818806 + MER74A LTR ERVL 474 548 -10 629 128 20 0 chr3 47218352 47218454 -170818704 - AluSp/q SINE Alu -1 312 209 1067 263 53 7 chr3 47218481 47218762 -170818396 - MLT1G1 LTR MaLR -295 300 7 696 299 0 44 chr3 47218873 47219077 -170818081 + MER115 DNA AcHobo 8 202 -491 288 333 0 50 chr3 47219107 47219227 -170817931 + MER115 DNA AcHobo 421 534 -159 256 130 152 0 chr3 47219297 47219343 -170817815 + Zaphod DNA AcHobo 3979 4031 0 276 229 33 0 chr3 47219493 47219554 -170817604 - MIR SINE MIR -107 155 93 1869 138 0 27 chr3 47220061 47220358 -170816800 + AluJb SINE Alu 1 289 -23 330 26 0 0 chr3 47220358 47220397 -170816761 + (TA)n Simple_repeat Simple_repeat 1 39 0 * 365 0 22 0 chr3 47220396 47220441 -170816717 + (GA)n Simple_repeat Simple_repeat 2 47 0 1467 84 9 23 chr3 47220446 47220661 -170816497 + AluSg/x SINE Alu 83 294 -18 188 371 52 0 chr3 47220686 47220802 -170816356 + L2 LINE L2 2916 3037 -235 2708 185 165 34 chr3 47221669 47222426 -170814732 - L1MC4 LINE L1 -2 8040 7185 3620 236 73 69 chr3 47222428 47223361 -170813797 - L1MC4a LINE L1 -748 5398 4470 192 40 0 0 chr3 47223361 47223386 -170813772 + (TTG)n Simple_repeat Simple_repeat 2 26 0 3620 236 73 69 chr3 47223386 47224181 -170812977 - L1MC4a LINE L1 -1676 4470 5161 2064 127 3 0 chr3 47224181 47224488 -170812670 - AluSg SINE Alu -2 308 1 3620 236 73 69 chr3 47224488 47224695 -170812463 - L1MC4a LINE L1 -984 5162 4957 2318 60 7 3 chr3 47224699 47224998 -170812160 - AluY SINE Alu -11 300 1 22385 63 19 3 chr3 47225023 47228745 -170808413 - L1PA6 LINE L1 -6 6148 2382 10154 152 25 31 chr3 47228745 47230556 -170806602 - L1PA6 LINE L1 -4336 1810 11 436 263 60 67 chr3 47230569 47230900 -170806258 - L1MC4a LINE L1 -1186 4960 4632 416 223 111 58 chr3 47230922 47231197 -170805961 + Charlie8 DNA MER1_type 49 1412 -1005 238 283 10 30 chr3 47231283 47231382 -170805776 + L2 LINE L2 3217 3313 0 1325 242 114 28 chr3 47231458 47231750 -170805408 + L1MC4a LINE L1 5526 5792 -2016 1835 145 17 3 chr3 47231750 47232046 -170805112 + AluSx SINE Alu 1 300 -12 1325 242 114 28 chr3 47232046 47232281 -170804877 + L1MC4a LINE L1 5792 6098 -1710 1957 124 7 3 chr3 47233056 47233346 -170803812 + AluSx SINE Alu 1 291 -21 284 159 0 0 chr3 47234075 47234119 -170803039 - MER44D DNA MER2_type 0 605 562 2920 133 84 31 chr3 47234153 47234665 -170802493 - MER44D DNA MER2_type -7 598 5 2120 96 0 4 chr3 47234865 47235180 -170801978 + AluY SINE Alu 2 315 0 350 295 183 4 chr3 47235401 47235642 -170801516 + L2 LINE L2 2836 3119 -194 245 375 0 21 chr3 47236486 47236630 -170800528 + LTR16C LTR ERVL 336 476 -15 1198 260 82 28 chr3 47236921 47237386 -170799772 - HAL1 LINE L1 0 2507 2018 875 159 29 138 chr3 47237386 47237664 -170799494 + MLT1A1 LTR MaLR 1 308 -57 2411 93 0 0 chr3 47237664 47237976 -170799182 + AluSq SINE Alu 1 312 -1 875 159 29 138 chr3 47237976 47238083 -170799075 + MLT1A1 LTR MaLR 308 284 -81 1681 143 3 51 chr3 47238083 47238398 -170798760 - AluJb SINE Alu -12 300 1 875 159 29 138 chr3 47238398 47238443 -170798715 + MLT1A1 LTR MaLR 283 331 -34 316 281 41 62 chr3 47238473 47238619 -170798539 - HAL1 LINE L1 -491 2016 1874 264 239 88 18 chr3 47238843 47238956 -170798202 - ERVL LTR ERVL -5084 680 560 2246 81 0 31 chr3 47239067 47239389 -170797769 - AluSx SINE Alu 0 312 1 1602 100 18 0 chr3 47239500 47239729 -170797429 - AluSq SINE Alu -80 233 1 686 98 196 0 chr3 47239729 47239841 -170797317 - AluSp SINE Alu -178 135 2 299 261 43 9 chr3 47239858 47239973 -170797185 + L1MC4 LINE L1 7924 8042 0 471 35 0 0 chr3 47239983 47240040 -170797118 + (GA)n Simple_repeat Simple_repeat 2 58 0 696 308 94 40 chr3 47240491 47241626 -170795532 + L1MEd LINE L1 549 1817 -4579 22 35 0 0 chr3 47241670 47241699 -170795459 + AT_rich Low_complexity Low_complexity 1 29 0 1833 137 20 17 chr3 47241763 47242063 -170795095 - AluJo SINE Alu -11 301 1 422 259 39 40 chr3 47242144 47242507 -170794651 + L1MEd LINE L1 2158 2515 -3700 741 283 144 25 chr3 47243240 47243601 -170793557 + MLT1J LTR MaLR 106 509 -2 26 0 0 0 chr3 47243785 47243811 -170793347 + AT_rich Low_complexity Low_complexity 1 26 0 811 232 37 5 chr3 47244524 47244714 -170792444 - MLT1H LTR MaLR -353 196 1 937 197 39 11 chr3 47244741 47244919 -170792239 + MER20 DNA MER1_type 1 183 -36 251 95 0 48 chr3 47244919 47244961 -170792197 + MER20 DNA MER1_type 144 183 -36 * 263 102 0 41 chr3 47244954 47245003 -170792155 + MER20 DNA MER1_type 137 183 -36 239 122 0 41 chr3 47244996 47245045 -170792113 + MER20 DNA MER1_type 137 183 -36 * 278 102 0 41 chr3 47245038 47245087 -170792071 + MER20 DNA MER1_type 137 183 -36 278 102 0 41 chr3 47245080 47245129 -170792029 + MER20 DNA MER1_type 137 183 -36 263 102 0 41 chr3 47245122 47245171 -170791987 + MER20 DNA MER1_type 137 183 -36 * 267 61 20 61 chr3 47245164 47245213 -170791945 + MER20 DNA MER1_type 137 183 -36 * 288 102 0 41 chr3 47245206 47245255 -170791903 + MER20 DNA MER1_type 137 183 -36 278 102 0 41 chr3 47245248 47245297 -170791861 + MER20 DNA MER1_type 137 183 -36 * 278 102 0 41 chr3 47245290 47245339 -170791819 + MER20 DNA MER1_type 137 183 -36 278 102 0 41 chr3 47245332 47245381 -170791777 + MER20 DNA MER1_type 137 183 -36 278 102 0 41 chr3 47245374 47245423 -170791735 + MER20 DNA MER1_type 137 183 -36 268 122 0 41 chr3 47245416 47245465 -170791693 + MER20 DNA MER1_type 137 183 -36 * 268 122 0 41 chr3 47245458 47245507 -170791651 + MER20 DNA MER1_type 137 183 -36 268 122 0 41 chr3 47245500 47245549 -170791609 + MER20 DNA MER1_type 137 183 -36 * 278 102 0 41 chr3 47245542 47245591 -170791567 + MER20 DNA MER1_type 137 183 -36 278 102 0 41 chr3 47245584 47245633 -170791525 + MER20 DNA MER1_type 137 183 -36 278 102 0 41 chr3 47245626 47245675 -170791483 + MER20 DNA MER1_type 137 183 -36 278 102 0 41 chr3 47245668 47245717 -170791441 + MER20 DNA MER1_type 137 183 -36 246 104 21 42 chr3 47245710 47245758 -170791400 + MER20 DNA MER1_type 137 183 -36 * 469 131 12 24 chr3 47245751 47245835 -170791323 + MER20 DNA MER1_type 137 219 0 370 212 44 109 chr3 47246012 47246149 -170791009 + MIR SINE MIR 2 129 -133 500 277 8 0 chr3 47246187 47246306 -170790852 + MIR SINE MIR 116 235 -27 815 107 0 0 chr3 47246964 47247076 -170790082 + AluSp/q SINE Alu 169 280 -33 459 285 89 0 chr3 47247274 47247432 -170789726 - MIR SINE MIR -89 173 2 409 224 60 17 chr3 47247736 47247852 -170789306 + MER94 DNA DNA 14 134 0 939 191 153 21 chr3 47248016 47248257 -170788901 - MLT1F LTR MaLR 0 542 270 900 258 34 45 chr3 47248306 47248570 -170788588 - MLT1F1 LTR MaLR -240 327 67 1358 182 0 0 chr3 47248570 47248806 -170788352 - AluJo SINE Alu -76 236 1 420 133 0 0 chr3 47248806 47248866 -170788292 - MLT1F1 LTR MaLR -503 64 5 200 208 0 75 chr3 47248893 47248946 -170788212 + MIR SINE MIR 188 236 -26 502 269 76 42 chr3 47249583 47249821 -170787337 - MLT1K LTR MaLR -13 575 330 187 301 82 0 chr3 47250018 47250091 -170787067 - MIR SINE MIR -62 146 68 479 286 48 37 chr3 47251156 47251345 -170785813 + MIR SINE MIR 2 192 -70 732 226 44 0 chr3 47251732 47251913 -170785245 + MER5A DNA MER1_type 1 189 0 476 258 104 41 chr3 47251985 47252206 -170784952 + MIR SINE MIR 22 256 -6 228 256 51 13 chr3 47252376 47252454 -170784704 - MIR SINE MIR -67 195 115 394 245 147 35 chr3 47252977 47253120 -170784038 - LTR16A1 LTR ERVL 0 457 299 1790 148 180 11 chr3 47254497 47254863 -170782295 - MSTA LTR MaLR 0 428 1 21 0 0 0 chr3 47255153 47255174 -170781984 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr3 47255302 47255328 -170781830 + AT_rich Low_complexity Low_complexity 1 26 0 293 224 13 26 chr3 47256201 47256277 -170780881 + MER5A DNA MER1_type 107 181 -8 239 272 103 44 chr3 47256277 47256413 -170780745 - MER5B DNA MER1_type -4 174 31 422 294 48 14 chr3 47257170 47257316 -170779842 + LTR16C LTR ERVL 97 247 -244 401 102 176 0 chr3 47257632 47257719 -170779439 - MER5A DNA MER1_type -80 109 4 1809 172 20 3 chr3 47258680 47258982 -170778176 - AluJo SINE Alu -5 307 1 442 300 73 10 chr3 47259449 47259795 -170777363 + L2 LINE L2 2647 3051 -221 4701 183 20 15 chr3 47259858 47260892 -170776266 - L1MB8 LINE L1 -2 6176 5133 1785 184 0 10 chr3 47260892 47261226 -170775932 - AluSx SINE Alu 0 312 1 4701 183 20 15 chr3 47261226 47261258 -170775900 - L1MB8 LINE L1 -1045 5133 5103 2257 95 0 7 chr3 47262067 47262361 -170774797 - AluSq SINE Alu -21 292 1 366 310 163 0 chr3 47263112 47263296 -170773862 + MIR SINE MIR 45 258 -4 258 350 32 16 chr3 47263333 47263456 -170773702 - MIR SINE MIR -85 177 53 258 307 0 0 chr3 47264305 47264380 -170772778 - L2 LINE L2 -4 3309 3235 2095 164 109 0 chr3 47264462 47264839 -170772319 - MER47B DNA MER2_type 0 418 1 24 32 0 0 chr3 47264976 47265007 -170772151 + AT_rich Low_complexity Low_complexity 1 31 0 853 238 126 26 chr3 47266345 47266647 -170770511 - LTR16A1 LTR ERVL 0 457 126 2479 92 0 0 chr3 47267260 47267565 -170769593 - AluSc SINE Alu -4 305 1 257 262 0 60 chr3 47267759 47267843 -170769315 + MER94 DNA DNA 54 132 -2 908 87 0 0 chr3 47268777 47268903 -170768255 - AluY SINE Alu -8 303 178 397 212 20 10 chr3 47269144 47269243 -170767915 - L1ME3A LINE L1 -12 6158 6059 255 183 92 58 chr3 47269301 47269421 -170767737 + Charlie7 DNA MER1_type 2450 2573 -39 29 0 0 0 chr3 47271076 47271105 -170766053 + AT_rich Low_complexity Low_complexity 1 29 0 592 170 75 0 chr3 47271269 47271387 -170765771 + MLT1A2 LTR MaLR 264 374 0 409 247 0 0 chr3 47271387 47271472 -170765686 + MER113 DNA MER1_type? 404 488 -33 2241 91 3 10 chr3 47272055 47272352 -170764806 - AluSx SINE Alu -17 295 1 198 344 145 8 chr3 47273098 47273229 -170763929 - MIR3 SINE MIR -9 199 51 1563 222 86 26 chr3 47273354 47273432 -170763726 - MER113 DNA MER1_type? -33 488 416 1551 185 20 77 chr3 47273432 47273822 -170763336 - MLT1A2 LTR MaLR -3 371 4 1563 222 86 26 chr3 47273822 47274198 -170762960 - MER113 DNA MER1_type? -105 416 7 181 236 18 0 chr3 47274792 47274847 -170762311 - MIR SINE MIR -66 142 87 1456 212 38 9 chr3 47275316 47275660 -170761498 - L1MC4 LINE L1 0 8042 7689 185 370 31 8 chr3 47276003 47276130 -170761028 - L2 LINE L2 -465 2849 2720 752 228 11 28 chr3 47276472 47276652 -170760506 - MER5B DNA MER1_type 0 178 2 244 279 0 0 chr3 47276685 47276746 -170760412 - L2 LINE L2 -5 3308 3248 263 231 0 31 chr3 47278007 47278072 -170759086 + CT-rich Low_complexity Low_complexity 1 63 0 349 313 86 0 chr3 47278117 47278315 -170758843 + MIR SINE MIR 32 246 -16 345 194 30 0 chr3 47278397 47278464 -170758694 - MER5B DNA MER1_type -16 162 94 788 237 99 55 chr3 47278668 47279102 -170758056 + LTR16C LTR ERVL 2 454 -37 21 0 0 0 chr3 47281111 47281132 -170756026 + AT_rich Low_complexity Low_complexity 1 21 0 798 205 142 5 chr3 47282215 47282405 -170754753 - MER58B DNA MER1_type -2 339 124 577 206 15 0 chr3 47284671 47284807 -170752351 - L1MB7 LINE L1 0 6184 6047 2421 86 47 83 chr3 47284818 47285261 -170751897 - L1MA2 LINE L1 0 6304 5878 1271 129 28 81 chr3 47285275 47285523 -170751635 - AluJb SINE Alu -1 311 77 401 77 0 0 chr3 47285538 47285590 -170751568 - L1MA2 LINE L1 -418 5887 5836 242 158 0 0 chr3 47285590 47285628 -170751530 - L1MB8 LINE L1 -115 6063 6026 2269 103 3 3 chr3 47286029 47286329 -170750829 + AluSx SINE Alu 6 305 -7 2172 191 75 13 chr3 47286547 47287017 -170750141 - MLT1D LTR MaLR 0 505 7 409 202 1 4 chr3 47287022 47287106 -170750052 - L1MB8 LINE L1 -168 6010 5929 795 194 10 80 chr3 47287477 47287678 -170749480 + MER5A DNA MER1_type 3 189 0 331 322 148 0 chr3 47292718 47292901 -170744257 - MIR SINE MIR -51 211 2 306 276 196 35 chr3 47293521 47293832 -170743326 + L1ME LINE L1 2103 2463 -3933 424 311 60 17 chr3 47294102 47294312 -170742846 + MIR SINE MIR 21 237 -25 439 290 82 75 chr3 47294313 47294988 -170742170 + L1ME LINE L1 2746 3415 -2800 1455 172 72 14 chr3 47294988 47295279 -170741879 + AluJo SINE Alu 1 308 -4 439 290 82 75 chr3 47295279 47295650 -170741508 + L1ME LINE L1 3415 3806 -2409 2903 6 3 0 chr3 47295650 47295961 -170741197 + AluYb8 SINE Alu 1 312 -6 439 290 82 75 chr3 47295961 47296275 -170740883 + L1ME LINE L1 3806 4116 -2099 343 322 44 22 chr3 47296423 47296603 -170740555 + L1M4 LINE L1 691 874 -5668 280 215 11 21 chr3 47296656 47296749 -170740409 + (CATATA)n Simple_repeat Simple_repeat 4 95 0 936 208 117 49 chr3 47296755 47297182 -170739976 + L1M4 LINE L1 896 1351 -5195 2217 112 3 10 chr3 47297227 47297541 -170739617 + AluSx SINE Alu 1 312 0 1456 102 36 5 chr3 47297552 47297748 -170739410 + AluSq SINE Alu 1 202 -111 1049 103 0 32 chr3 47297748 47297898 -170739260 + AluSg/x SINE Alu 161 305 -7 730 208 19 102 chr3 47297901 47298165 -170738993 + L1M4 LINE L1 1342 1583 -4959 478 299 129 26 chr3 47298188 47298613 -170738545 + L1ME LINE L1 4964 5432 -783 582 133 0 0 chr3 47298620 47298703 -170738455 + AluJ/FLAM SINE Alu 2 84 -228 726 221 193 24 chr3 47298703 47298957 -170738201 + L1ME LINE L1 5427 5723 -467 1796 157 27 45 chr3 47299318 47299795 -170737363 + MER41B LTR ERV1 114 482 -4 2789 162 89 11 chr3 47299811 47300359 -170736799 - LTR49 LTR ERV1 -4 591 1 204 205 39 51 chr3 47300407 47300485 -170736673 + MER5A DNA MER1_type 29 105 -84 271 266 51 0 chr3 47300559 47300638 -170736520 + MIR SINE MIR 102 184 -78 590 216 167 33 chr3 47300653 47300898 -170736260 - L2 LINE L2 -1 3312 3035 234 0 0 0 chr3 47302074 47302100 -170735058 + (A)n Simple_repeat Simple_repeat 1 26 0 705 280 138 21 chr3 47302381 47302706 -170734452 + L2 LINE L2 2922 3284 -29 2285 93 3 0 chr3 47306665 47306965 -170730193 + AluSp SINE Alu 1 301 -12 249 305 43 60 chr3 47307146 47307379 -170729779 + L2 LINE L2 2812 3040 -232 384 96 0 0 chr3 47307610 47307662 -170729496 + MIR SINE MIR 94 145 -117 342 91 0 0 chr3 47307746 47307790 -170729368 - MER94 DNA DNA -89 45 2 333 232 128 24 chr3 47309035 47309110 -170728048 - MIR3 SINE MIR -31 177 90 355 250 32 88 chr3 47309110 47309326 -170727832 + MIR3 SINE MIR 1 204 -4 450 289 46 77 chr3 47309582 47309732 -170727426 + MIR SINE MIR 3 143 -119 2077 117 0 7 chr3 47309732 47310032 -170727126 + AluSx SINE Alu 1 298 -14 450 289 46 77 chr3 47310032 47310141 -170727017 + MIR SINE MIR 143 254 -8 747 176 73 73 chr3 47311218 47311423 -170725735 + L1ME2 LINE L1 5959 6163 -1 1246 180 31 107 chr3 47312022 47312349 -170724809 + AluJo SINE Alu 1 302 0 6058 101 13 16 chr3 47312617 47312973 -170724185 + L1PA14 LINE L1 5124 5480 -681 2262 69 3 10 chr3 47312973 47313277 -170723881 + AluY SINE Alu 1 302 -9 6058 101 13 16 chr3 47313277 47313961 -170723197 + L1PA14 LINE L1 5480 6161 0 541 250 82 5 chr3 47315414 47315598 -170721560 + L1ME4a LINE L1 5557 5754 -416 322 259 26 26 chr3 47315844 47315960 -170721198 + GA-rich Low_complexity Low_complexity 3 118 0 989 199 47 47 chr3 47317508 47317764 -170719394 - LTR16A1 LTR ERVL 0 457 202 263 261 15 0 chr3 47318058 47318123 -170719035 + MIR SINE MIR 187 252 -10 329 303 42 0 chr3 47318768 47318887 -170718271 - L2 LINE L2 -2 3270 3147 308 305 59 68 chr3 47321336 47321442 -170715716 - L1MEc LINE L1 -2796 3333 3228 4311 113 19 5 chr3 47321442 47322068 -170715090 - MER41B LTR ERV1 0 635 1 308 305 59 68 chr3 47322068 47322197 -170714961 - L1MEc LINE L1 -2901 3228 3100 265 256 50 16 chr3 47322249 47322370 -170714788 + L1ME4a LINE L1 5975 6099 -22 26 0 0 0 chr3 47323013 47323039 -170714119 + AT_rich Low_complexity Low_complexity 1 26 0 792 275 135 20 chr3 47323224 47323636 -170713522 - MLT1J LTR MaLR -2 509 1 422 259 39 40 chr3 47324314 47324677 -170712481 - L1MEc LINE L1 -3700 2429 2072 1833 137 20 17 chr3 47324758 47325058 -170712100 + AluJo SINE Alu 1 301 -11 22 35 0 0 chr3 47325121 47325150 -170712008 + AT_rich Low_complexity Low_complexity 1 29 0 544 308 93 40 chr3 47325194 47326330 -170710828 - L1MEc LINE L1 -4579 1731 463 471 35 0 0 chr3 47326781 47326838 -170710320 + (TC)n Simple_repeat Simple_repeat 2 58 0 299 261 43 9 chr3 47326848 47326963 -170710195 - L1MC4 LINE L1 0 8042 7924 686 98 196 0 chr3 47326980 47327092 -170710066 + AluSp SINE Alu 2 135 -178 1644 100 13 0 chr3 47327092 47327322 -170709836 + AluSq SINE Alu 1 233 -80 2238 80 0 10 chr3 47327433 47327733 -170709425 + AluSx SINE Alu 1 297 -15 216 0 0 0 chr3 47327973 47327997 -170709161 + (T)n Simple_repeat Simple_repeat 1 24 0 1984 141 0 0 chr3 47328193 47328505 -170708653 - AluSx SINE Alu 0 312 1 3938 112 41 47 chr3 47329277 47329980 -170707178 - L1PB4 LINE L1 -2 6154 5456 638 170 136 11 chr3 47330057 47330210 -170706948 + MER5A DNA MER1_type 4 178 -11 481 225 254 0 chr3 47330208 47330346 -170706812 - MER5A DNA MER1_type -6 183 11 * 1262 158 35 0 chr3 47330352 47330554 -170706604 - MER58A DNA MER1_type -4 220 12 2264 82 0 3 chr3 47331958 47332251 -170704907 + AluSg SINE Alu 1 292 -18 33 25 0 0 chr3 47332414 47332454 -170704704 + AT_rich Low_complexity Low_complexity 1 40 0 1425 180 35 18 chr3 47332454 47332737 -170704421 - AluJo SINE Alu -24 288 1 207 0 0 0 chr3 47334576 47334599 -170702559 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 1297 166 42 31 chr3 47334603 47334862 -170702296 - AluJo SINE Alu -30 282 21 1505 134 40 4 chr3 47335474 47335727 -170701431 + AluSx SINE Alu 51 312 0 528 145 12 0 chr3 47335938 47336053 -170701105 - AluJb SINE Alu 0 313 198 461 178 0 11 chr3 47337556 47337646 -170699512 + AluS SINE Alu 224 312 0 841 231 63 52 chr3 47337664 47337933 -170699225 + L1ME3A LINE L1 5899 6170 0 924 166 12 0 chr3 47337941 47338110 -170699048 + AluSg/x SINE Alu 136 306 -6 310 331 110 0 chr3 47338170 47338297 -170698861 - MIR SINE MIR -12 250 110 330 334 153 2 chr3 47338518 47338717 -170698441 + MIR SINE MIR 30 254 -8 753 234 122 11 chr3 47339150 47339338 -170697820 + MER63A DNA MER1_type 2 210 0 216 289 92 0 chr3 47339440 47339516 -170697642 - L2 LINE L2 -47 3225 3143 2077 94 42 3 chr3 47339955 47340243 -170696915 + AluSx SINE Alu 6 304 -8 212 234 31 16 chr3 47341061 47341125 -170696033 + L2 LINE L2 3174 3238 -34 1530 160 50 7 chr3 47341515 47341796 -170695362 - AluJo SINE Alu -19 293 1 687 271 55 71 chr3 47341920 47342111 -170695047 - L1ME LINE L1 -344 5777 5592 1952 113 0 35 chr3 47342111 47342421 -170694737 - AluSq SINE Alu -14 299 1 687 271 55 71 chr3 47342421 47342554 -170694604 - L1ME LINE L1 -529 5592 5458 342 98 0 0 chr3 47342723 47342774 -170694384 + (TG)n Simple_repeat Simple_repeat 1 51 0 418 329 113 5 chr3 47343543 47343756 -170693402 + MIR SINE MIR 3 238 -24 199 280 56 28 chr3 47343751 47343858 -170693300 - L2 LINE L2 -215 3057 2948 * 724 252 45 0 chr3 47344049 47344204 -170692954 + FRAM SINE Alu 1 162 -4 226 349 88 21 chr3 47344249 47344441 -170692717 - L2 LINE L2 -786 2528 2324 1697 226 118 34 chr3 47344995 47345503 -170691655 - MLT1H1 LTR MaLR -4 551 1 2037 121 7 0 chr3 47345532 47345829 -170691329 - AluSx SINE Alu -8 304 6 2132 115 7 0 chr3 47346869 47347165 -170689993 - AluSx SINE Alu -14 298 1 247 240 0 0 chr3 47347985 47348035 -170689123 + CT-rich Low_complexity Low_complexity 1 50 0 242 250 0 18 chr3 47349721 47349777 -170687381 - Tigger5 DNA MER2_type -2268 55 1 2109 86 7 0 chr3 47350733 47351011 -170686147 + AluSx SINE Alu 1 280 -32 458 179 0 53 chr3 47351047 47351142 -170686016 - MER91B DNA MER1_type 0 190 101 580 194 0 48 chr3 47351170 47351294 -170685864 - MER91B DNA MER1_type -60 130 13 2257 94 0 0 chr3 47351776 47352074 -170685084 + AluSx SINE Alu 1 298 -14 701 259 96 11 chr3 47352179 47352631 -170684527 - MLT1H LTR MaLR 0 549 8 976 189 180 9 chr3 47353813 47354046 -170683112 - LTR16C LTR ERVL 0 491 219 234 0 0 0 chr3 47354641 47354667 -170682491 + (A)n Simple_repeat Simple_repeat 1 26 0 234 0 0 0 chr3 47354704 47354730 -170682428 + (T)n Simple_repeat Simple_repeat 1 26 0 4257 124 13 9 chr3 47354852 47355530 -170681628 - L1MC1 LINE L1 -102 6231 5551 1833 162 61 46 chr3 47355526 47355983 -170681175 - L1MDa LINE L1 -4825 1715 1252 * 858 158 0 66 chr3 47355983 47356179 -170680979 - AluJb SINE Alu -43 269 87 3202 231 72 33 chr3 47356179 47356534 -170680624 - L1MDa LINE L1 -5310 1230 890 2247 111 7 3 chr3 47356534 47356841 -170680317 - AluSc SINE Alu -1 308 1 3202 231 72 33 chr3 47356841 47357615 -170679543 - L1MDa LINE L1 -5650 890 9 2334 74 0 3 chr3 47358417 47358724 -170678434 + AluSc SINE Alu 1 306 0 547 187 37 87 chr3 47359887 47359929 -170677229 - L1ME1 LINE L1 -2 6164 6121 1804 145 7 17 chr3 47359929 47360225 -170676933 + AluJb SINE Alu 1 293 -19 547 187 37 87 chr3 47360225 47360376 -170676782 - L1ME1 LINE L1 -45 6121 6023 * 1830 209 51 52 chr3 47360359 47360765 -170676393 - L1ME1 LINE L1 -586 5580 5175 3656 146 75 17 chr3 47360765 47360802 -170676356 - L1MB3 LINE L1 -3 6180 6147 2393 86 0 0 chr3 47360802 47361092 -170676066 + AluSg SINE Alu 9 298 -12 3656 146 75 17 chr3 47361092 47361626 -170675532 - L1MB3 LINE L1 -36 6147 5645 1826 152 200 0 chr3 47361626 47361981 -170675177 - MSTB LTR MaLR 0 426 1 3656 146 75 17 chr3 47361981 47362070 -170675088 - L1MB3 LINE L1 -538 5645 5563 207 0 0 0 chr3 47362070 47362093 -170675065 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3656 146 75 17 chr3 47362093 47362124 -170675034 - L1MB3 LINE L1 -620 5563 5447 1830 209 51 52 chr3 47362124 47362486 -170674672 - L1ME1 LINE L1 -991 5175 4817 443 278 160 0 chr3 47363698 47363885 -170673273 + MIR SINE MIR 46 262 0 243 207 85 61 chr3 47363896 47363978 -170673180 - L2 LINE L2 -2 3270 3187 24 0 0 0 chr3 47364082 47364106 -170673052 + AT_rich Low_complexity Low_complexity 1 24 0 538 240 35 35 chr3 47364110 47364281 -170672877 - MIR SINE MIR -58 204 34 496 331 28 0 chr3 47364779 47364957 -170672201 - LTR67 LTR ERVL 0 557 375 189 107 0 0 chr3 47364991 47365019 -170672139 + (A)n Simple_repeat Simple_repeat 1 28 0 2251 113 3 0 chr3 47365216 47365516 -170671642 + AluSx SINE Alu 1 301 -11 346 264 92 35 chr3 47365519 47365693 -170671465 + L1ME3A LINE L1 5764 5947 -223 1010 83 15 0 chr3 47365993 47366126 -170671032 + AluSq/x SINE Alu 1 135 -178 1804 137 0 51 chr3 47366126 47366441 -170670717 + AluY SINE Alu 1 299 -12 872 192 34 107 chr3 47366443 47366552 -170670606 - MLT1A1 LTR MaLR -60 365 250 2497 85 3 0 chr3 47366552 47366859 -170670299 - AluSp SINE Alu -5 308 1 872 192 34 107 chr3 47366859 47367136 -170670022 - MLT1A1 LTR MaLR -175 250 1 1256 260 79 28 chr3 47367136 47367602 -170669556 + HAL1 LINE L1 2018 2507 0 186 273 72 58 chr3 47368047 47368186 -170668972 - MIR SINE MIR -58 204 64 23 33 0 0 chr3 47368383 47368413 -170668745 + AT_rich Low_complexity Low_complexity 1 30 0 2413 76 0 31 chr3 47369060 47369377 -170667781 + AluY SINE Alu 1 307 -4 254 300 0 39 chr3 47370927 47371057 -170666101 - LTR67 LTR ERVL 0 557 433 511 322 121 23 chr3 47371796 47372184 -170664974 - L2 LINE L2 -2 3270 2845 354 277 54 42 chr3 47372230 47372396 -170664762 - L2 LINE L2 -558 2756 2589 473 46 0 15 chr3 47372968 47373033 -170664125 + (CA)n Simple_repeat Simple_repeat 2 65 0 629 262 143 25 chr3 47373181 47373519 -170663639 - LTR16A1 LTR ERVL 0 457 88 268 260 0 13 chr3 47374200 47374277 -170662881 + MIR SINE MIR 176 251 -11 182 287 81 36 chr3 47375214 47375461 -170661697 + L2 LINE L2 175 432 -2882 479 311 78 41 chr3 47375510 47376051 -170661107 + L2 LINE L2 2713 3272 0 565 179 8 8 chr3 47376051 47376185 -170660973 + (TGGA)n Simple_repeat Simple_repeat 2 135 0 1471 170 25 85 chr3 47376632 47376950 -170660208 + AluJb SINE Alu 1 299 -13 1387 146 189 4 chr3 47377309 47377563 -170659595 - AluSx SINE Alu -1 301 1 207 0 0 0 chr3 47377565 47377588 -170659570 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1703 172 4 0 chr3 47377589 47377856 -170659302 - AluJo SINE Alu -32 280 13 473 143 0 0 chr3 47377920 47377990 -170659168 + LTR37B LTR ERV1 10 79 -389 610 201 136 6 chr3 47378004 47378164 -170658994 + MER5A DNA MER1_type 6 189 0 973 190 76 15 chr3 47378222 47378506 -170658652 + LTR37B LTR ERV1 139 468 0 240 111 22 22 chr3 47378658 47378703 -170658455 - MER20 DNA MER1_type -38 181 137 * 277 102 0 41 chr3 47378696 47378745 -170658413 - MER20 DNA MER1_type -36 183 137 272 125 0 21 chr3 47378738 47378786 -170658372 - MER20 DNA MER1_type -36 183 137 * 273 122 0 41 chr3 47378779 47378828 -170658330 - MER20 DNA MER1_type -36 183 137 238 122 0 41 chr3 47378821 47378870 -170658288 - MER20 DNA MER1_type -36 183 137 * 261 102 0 41 chr3 47378863 47378912 -170658246 - MER20 DNA MER1_type -36 183 137 * 277 102 0 41 chr3 47378905 47378954 -170658204 - MER20 DNA MER1_type -36 183 137 277 102 0 41 chr3 47378947 47378996 -170658162 - MER20 DNA MER1_type -36 183 137 252 122 0 41 chr3 47378989 47379038 -170658120 - MER20 DNA MER1_type -36 183 137 * 277 102 0 41 chr3 47379031 47379080 -170658078 - MER20 DNA MER1_type -36 183 137 259 122 0 41 chr3 47379073 47379122 -170658036 - MER20 DNA MER1_type -36 183 137 * 269 65 0 43 chr3 47379118 47379164 -170657994 - MER20 DNA MER1_type -39 180 137 * 277 102 0 41 chr3 47379157 47379206 -170657952 - MER20 DNA MER1_type -36 183 137 261 102 0 41 chr3 47379199 47379248 -170657910 - MER20 DNA MER1_type -36 183 137 * 273 122 0 41 chr3 47379241 47379290 -170657868 - MER20 DNA MER1_type -36 183 137 266 122 0 41 chr3 47379283 47379332 -170657826 - MER20 DNA MER1_type -36 183 137 * 277 102 0 41 chr3 47379325 47379374 -170657784 - MER20 DNA MER1_type -36 183 137 277 102 0 41 chr3 47379367 47379416 -170657742 - MER20 DNA MER1_type -36 183 137 277 102 0 41 chr3 47379409 47379458 -170657700 - MER20 DNA MER1_type -36 183 137 266 122 0 41 chr3 47379451 47379500 -170657658 - MER20 DNA MER1_type -36 183 137 * 297 82 0 41 chr3 47379493 47379542 -170657616 - MER20 DNA MER1_type -36 183 137 277 102 0 41 chr3 47379535 47379584 -170657574 - MER20 DNA MER1_type -36 183 137 * 250 95 0 48 chr3 47379577 47379619 -170657539 - MER20 DNA MER1_type -36 183 144 * 935 197 39 11 chr3 47379619 47379797 -170657361 - MER20 DNA MER1_type -36 183 1 1454 238 139 23 chr3 47379824 47380298 -170656860 + MLT1H LTR MaLR 1 529 -20 327 187 57 109 chr3 47380818 47381024 -170656134 - AluSp SINE Alu -171 132 23 595 259 90 0 chr3 47381031 47381197 -170655961 - L1ME3A LINE L1 -280 5890 5710 180 313 30 0 chr3 47382218 47382285 -170654873 + L2 LINE L2 2688 2756 -558 1572 138 0 9 chr3 47382516 47382748 -170654410 + AluSg/x SINE Alu 81 310 0 753 259 14 14 chr3 47382748 47382968 -170654190 + L1ME3A LINE L1 5605 5824 -297 557 64 13 0 chr3 47383568 47383646 -170653512 + (GGAAA)n Simple_repeat Simple_repeat 2 80 0 217 296 12 47 chr3 47383776 47383945 -170653213 + G-rich Low_complexity Low_complexity 5 167 0 343 179 0 24 chr3 47384772 47384856 -170652302 + GA-rich Low_complexity Low_complexity 2 83 0 277 261 37 12 chr3 47384927 47385088 -170652070 + (TG)n Simple_repeat Simple_repeat 1 165 0 212 290 0 0 chr3 47385095 47385157 -170652001 + G-rich Low_complexity Low_complexity 4 65 0 247 335 32 100 chr3 47486091 47486372 -170550786 + L2 LINE L2 2995 3256 -16 1081 142 18 30 chr3 47488485 47488654 -170548504 - AluSq SINE Alu -146 167 1 735 152 0 0 chr3 47488671 47488776 -170548382 + FRAM SINE Alu 1 100 -76 435 203 166 28 chr3 47488776 47488993 -170548165 + L1ME3A LINE L1 5849 6095 -75 931 161 7 7 chr3 47489017 47489172 -170547986 + FRAM SINE Alu 12 166 -10 22 0 0 0 chr3 47489295 47489317 -170547841 + AT_rich Low_complexity Low_complexity 1 22 0 491 340 123 21 chr3 47489323 47489747 -170547411 - L1MEd LINE L1 -5116 1003 537 867 181 52 116 chr3 47490334 47490405 -170546753 - MER33 DNA MER1_type -2284 301 227 3041 73 0 0 chr3 47490405 47490790 -170546368 + L1PA8 LINE L1 5784 6168 -4 867 181 52 116 chr3 47490790 47490970 -170546188 - MER33 DNA MER1_type -2358 227 37 234 0 0 0 chr3 47490970 47490996 -170546162 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1841 96 4 12 chr3 47490998 47491247 -170545911 - AluSx SINE Alu -26 286 40 867 181 52 116 chr3 47491247 47491319 -170545839 - MER33 DNA MER1_type -2549 36 1 299 267 89 11 chr3 47493335 47493425 -170543733 - MIR SINE MIR -8 254 158 679 246 42 18 chr3 47493430 47493597 -170543561 + MIR SINE MIR 92 262 0 309 298 39 10 chr3 47493603 47493707 -170543451 - MIR SINE MIR -107 155 49 * 319 360 52 58 chr3 47493694 47494002 -170543156 + L2 LINE L2 2930 3235 -37 533 289 90 15 chr3 47495298 47495502 -170541656 + MIR SINE MIR 23 241 -21 204 179 0 0 chr3 47497599 47497638 -170539520 + (CA)n Simple_repeat Simple_repeat 1 39 0 291 289 133 7 chr3 47498952 47499087 -170538071 - MIR SINE MIR -30 232 81 2933 197 22 20 chr3 47499489 47500073 -170537085 + MLT-int LTR MaLR 218 802 -933 2002 156 0 0 chr3 47500931 47501220 -170535938 - AluJo SINE Alu -23 289 1 489 248 91 66 chr3 47501259 47501457 -170535701 + MIR SINE MIR 5 207 -55 554 249 44 39 chr3 47502849 47503030 -170534128 + MIR SINE MIR 46 227 -35 238 179 18 18 chr3 47503040 47503096 -170534062 + CT-rich Low_complexity Low_complexity 3 58 0 275 311 59 8 chr3 47504512 47504631 -170532527 + MIR SINE MIR 23 147 -61 624 348 143 24 chr3 47505846 47506383 -170530775 + L1MEd LINE L1 568 1168 -4951 366 282 56 57 chr3 47506385 47506588 -170530570 + L1MEd LINE L1 1229 1431 -1059 1687 134 4 16 chr3 47506588 47506841 -170530317 + AluJb SINE Alu 50 299 -13 366 282 56 57 chr3 47506841 47507013 -170530145 + L1MEd LINE L1 1431 1635 -855 2536 60 0 10 chr3 47507025 47507324 -170529834 - AluY SINE Alu -15 296 1 824 95 0 0 chr3 47507351 47507456 -170529702 + U6 snRNA snRNA 1 105 -2 322 181 72 36 chr3 47507583 47507666 -170529492 - L1M4 LINE L1 -1548 4598 4513 1263 260 138 64 chr3 47507701 47508564 -170528594 + L1MC4a LINE L1 2829 3627 -2502 1492 190 4 4 chr3 47508564 47508811 -170528347 - AluJb SINE Alu -20 292 46 1263 260 138 64 chr3 47508811 47508883 -170528275 + L1MC4a LINE L1 3627 3692 -2437 618 109 0 0 chr3 47508883 47508984 -170528174 + (TA)n Simple_repeat Simple_repeat 1 101 0 2262 94 0 14 chr3 47508985 47509282 -170527876 - AluSx SINE Alu -19 293 1 22 35 0 0 chr3 47509285 47509314 -170527844 + AT_rich Low_complexity Low_complexity 1 29 0 1263 260 138 64 chr3 47509314 47509781 -170527377 + L1MC4a LINE L1 3693 4374 -1755 875 181 137 6 chr3 47509783 47509965 -170527193 + L1MC4a LINE L1 5366 5571 -2220 285 239 30 0 chr3 47510021 47510088 -170527070 + MER68 LTR ERV1 44 112 -450 1081 188 0 42 chr3 47510112 47510352 -170526806 + AluJo SINE Alu 1 230 -82 1112 261 24 90 chr3 47510440 47510782 -170526376 + MER68 LTR ERV1 169 479 -83 1982 134 0 3 chr3 47510782 47511074 -170526084 - AluSx SINE Alu -21 291 1 1112 261 24 90 chr3 47511074 47511153 -170526005 + MER68 LTR ERV1 479 562 0 8361 170 58 47 chr3 47511158 47511376 -170525782 + L1MC4a LINE L1 5575 5789 -2002 1484 188 11 7 chr3 47511376 47511663 -170525495 + AluJo SINE Alu 6 293 -19 8361 170 58 47 chr3 47511663 47512380 -170524778 + L1MC4a LINE L1 5789 6496 -1295 1846 103 37 4 chr3 47512380 47512652 -170524506 + AluSx SINE Alu 1 281 -31 225 0 0 0 chr3 47512655 47512680 -170524478 + (CA)n Simple_repeat Simple_repeat 2 26 0 8361 170 58 47 chr3 47512680 47512748 -170524410 + L1MC4a LINE L1 6497 6563 -1228 491 0 0 17 chr3 47512748 47512808 -170524350 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 8361 170 58 47 chr3 47512808 47513612 -170523546 + L1MC4a LINE L1 6563 7414 -377 1294 74 6 11 chr3 47513612 47513787 -170523371 + L1PA11 LINE L1 6001 6174 0 8361 170 58 47 chr3 47513787 47513909 -170523249 + L1MC4a LINE L1 7414 7533 -258 6191 84 1 3 chr3 47513910 47514691 -170522467 + LTR17 LTR ERV1 1 780 0 50609 51 2 9 chr3 47514691 47520748 -170516410 + HERV17 LTR ERV1 1 6019 -2607 262 103 0 0 chr3 47520741 47520780 -170516378 + HERV17 LTR ERV1 7510 7548 -1078 * 2420 68 0 0 chr3 47520770 47521062 -170516096 + HERV17 LTR ERV1 8335 8626 0 5953 76 30 4 chr3 47521062 47521822 -170515336 + LTR17 LTR ERV1 1 780 0 876 213 75 48 chr3 47521822 47522034 -170515124 + L1MD3 LINE L1 7721 7943 -52 1628 192 7 0 chr3 47522034 47522342 -170514816 - AluJo SINE Alu -2 310 1 876 213 75 48 chr3 47522342 47522397 -170514761 + L1MD3 LINE L1 7943 7995 0 4039 150 45 14 chr3 47522545 47523319 -170513839 + L1MB3 LINE L1 5386 6183 0 505 242 167 40 chr3 47523322 47523694 -170513464 + L1ME3A LINE L1 4425 4843 -1303 22 0 0 0 chr3 47523922 47523944 -170513214 + AT_rich Low_complexity Low_complexity 1 22 0 1665 254 95 30 chr3 47524074 47524115 -170513043 + L1ME3A LINE L1 5191 5228 -938 222 37 0 0 chr3 47524115 47524142 -170513016 + (CA)n Simple_repeat Simple_repeat 1 27 0 1665 254 95 30 chr3 47524142 47524204 -170512954 + L1ME3A LINE L1 5228 5285 -881 1995 129 0 16 chr3 47524204 47524515 -170512643 + AluSx SINE Alu 1 306 -6 1665 254 95 30 chr3 47524515 47524529 -170512629 + L1ME3A LINE L1 5285 5297 -869 2174 92 20 3 chr3 47524529 47524835 -170512323 + AluSx SINE Alu 1 311 -1 1665 254 95 30 chr3 47524835 47524987 -170512171 + L1ME3A LINE L1 5297 5438 -728 2078 92 10 33 chr3 47524987 47525290 -170511868 - AluSp SINE Alu -17 296 1 1665 254 95 30 chr3 47525290 47525736 -170511422 + L1ME3A LINE L1 5438 5955 -211 415 259 155 65 chr3 47527145 47527377 -170509781 + Charlie8 DNA MER1_type 2 254 -2163 2074 113 0 0 chr3 47527414 47527697 -170509461 - AluSx SINE Alu -29 283 1 1794 193 78 39 chr3 47527882 47528368 -170508790 + MLT1D LTR MaLR 1 505 0 2322 144 70 5 chr3 47529513 47529915 -170507243 + MSTC LTR MaLR 1 428 0 2181 104 0 3 chr3 47530316 47530614 -170506544 + AluSx SINE Alu 1 297 -15 538 245 62 37 chr3 47530853 47531157 -170506001 - LTR45B LTR ERV1 0 578 305 1023 124 0 0 chr3 47531665 47531810 -170505348 + AluSg SINE Alu 1 145 -165 2226 118 0 0 chr3 47532404 47532708 -170504450 - AluSx SINE Alu -8 304 1 2235 213 88 40 chr3 47537068 47537623 -170499535 + MER119 DNA MER1_type 2 583 0 198 103 0 0 chr3 47537817 47537846 -170499312 + (CA)n Simple_repeat Simple_repeat 2 30 0 245 276 0 0 chr3 47537846 47537912 -170499246 + GA-rich Low_complexity Low_complexity 8 76 0 347 298 164 23 chr3 47538160 47538331 -170498827 - MIR SINE MIR -9 253 59 354 311 61 18 chr3 47538754 47538918 -170498240 + MIR SINE MIR 82 252 -10 226 276 105 13 chr3 47539103 47539179 -170497979 - MIR SINE MIR -72 190 108 194 348 166 7 chr3 47539366 47539562 -170497596 + L2 LINE L2 2722 2960 -353 1679 146 80 3 chr3 47539676 47539963 -170497195 - AluJb SINE Alu -3 309 1 4703 33 0 2 chr3 47540975 47541527 -170495631 + L1PA3 LINE L1 5602 6152 -3 2221 98 0 0 chr3 47541688 47541983 -170495175 + AluSx SINE Alu 1 295 -17 246 32 0 0 chr3 47542273 47542304 -170494854 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 202 272 107 48 chr3 47543269 47543475 -170493683 + L2 LINE L2 2842 3059 -213 201 39 0 0 chr3 47543911 47543937 -170493221 + (GGGTG)n Simple_repeat Simple_repeat 3 28 0 326 385 0 0 chr3 47544246 47544376 -170492782 + MIR3 SINE MIR 58 187 -21 285 272 9 35 chr3 47544729 47544843 -170492315 + (CAGA)n Simple_repeat Simple_repeat 2 112 0 2715 42 0 9 chr3 47545576 47545907 -170491251 + L1PA8 LINE L1 5845 6172 0 317 287 232 30 chr3 47547135 47547299 -170489859 + MIR3 SINE MIR 10 206 -2 268 296 49 12 chr3 47547784 47547865 -170489293 + L3b LINE CR1 1498 1581 -2 4250 152 86 48 chr3 47547884 47548074 -170489084 + L1MC/D LINE L1 18 199 -6227 2041 138 0 0 chr3 47548074 47548379 -170488779 + AluSx SINE Alu 1 305 -7 4250 152 86 48 chr3 47548379 47548659 -170488499 + L1MC/D LINE L1 199 467 -5959 2064 99 10 10 chr3 47548659 47548953 -170488205 - AluSg SINE Alu -16 294 1 4250 152 86 48 chr3 47548953 47549338 -170487820 + L1MC/D LINE L1 467 907 -5519 378 179 0 0 chr3 47549330 47549397 -170487761 - L1MCa LINE L1 -6256 170 104 * 371 80 0 0 chr3 47549392 47549442 -170487716 + L1MC/D LINE L1 900 949 -5477 * 2209 161 39 89 chr3 47549443 47549935 -170487223 - MER21A LTR ERV1 -3 928 462 843 214 7 7 chr3 47549947 47550101 -170487057 - FRAM SINE Alu -12 154 1 1675 141 57 56 chr3 47550124 47550508 -170486650 - MER21A LTR ERV1 -472 459 28 240 35 0 0 chr3 47550508 47550537 -170486621 + (CA)n Simple_repeat Simple_repeat 2 30 0 3976 211 57 29 chr3 47550545 47551107 -170486051 + L1MC/D LINE L1 945 1490 -4936 1941 88 11 4 chr3 47551107 47551367 -170485791 + AluSc SINE Alu 37 298 -11 3976 211 57 29 chr3 47551367 47551758 -170485400 + L1MC/D LINE L1 1490 1869 -4557 477 0 0 0 chr3 47551758 47551811 -170485347 + (TA)n Simple_repeat Simple_repeat 1 53 0 3976 211 57 29 chr3 47551811 47552510 -170484648 + L1MC/D LINE L1 1869 2817 -3609 1494 212 98 14 chr3 47552509 47553033 -170484125 + L1MC/D LINE L1 5207 5783 -814 * 2569 193 31 75 chr3 47553034 47553750 -170483408 + L1MC4a LINE L1 6974 7657 -151 476 214 13 19 chr3 47553751 47553910 -170483248 + L1MD2 LINE L1 6196 6353 -6 5591 137 59 14 chr3 47553925 47554891 -170482267 + L1MC1 LINE L1 5324 6333 0 377 182 36 85 chr3 47559226 47559344 -170477814 + MER58B DNA MER1_type 30 325 -16 743 274 85 0 chr3 47560802 47561003 -170476155 + MIR SINE MIR 21 238 -24 183 42 0 0 chr3 47563483 47563507 -170473651 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1026 311 21 36 chr3 47564242 47564799 -170472359 + Charlie7 DNA MER1_type 33 581 -2031 432 209 37 8 chr3 47564800 47564934 -170472224 + Charlie7 DNA MER1_type 1830 1967 -645 972 196 71 21 chr3 47565360 47565641 -170471517 - L1MB8 LINE L1 -2 6176 5882 3537 148 49 5 chr3 47566311 47566585 -170470573 + L1MB3 LINE L1 5504 5764 -419 360 0 0 0 chr3 47566585 47566625 -170470533 + (CA)n Simple_repeat Simple_repeat 1 40 0 3537 148 49 5 chr3 47566625 47566999 -170470159 + L1MB3 LINE L1 5764 6181 -2 461 239 55 25 chr3 47567137 47567300 -170469858 - MLT1I LTR MaLR -1 408 241 287 205 120 34 chr3 47567333 47567450 -170469708 - MLT1I LTR MaLR -267 142 16 1752 161 14 4 chr3 47567931 47568257 -170468901 + AluJb SINE Alu 1 329 0 3237 251 113 34 chr3 47569509 47571073 -170466085 - L1MC4 LINE L1 -6 8036 6350 4592 250 77 17 chr3 47571166 47572825 -170464333 + L1MEc LINE L1 14 1771 -4625 381 274 131 0 chr3 47572829 47573004 -170464154 - L1M4 LINE L1 -2196 3950 3753 556 173 7 29 chr3 47573972 47574111 -170463047 - L1MEc LINE L1 -5254 1142 1007 650 273 145 9 chr3 47574799 47575143 -170462015 - HAL1 LINE L1 -11 2496 2106 265 272 105 9 chr3 47575189 47575303 -170461855 - HAL1 LINE L1 -524 1983 1859 1297 269 86 12 chr3 47575426 47575984 -170461174 - HAL1 LINE L1 -857 1650 1052 4584 171 25 11 chr3 47576014 47577290 -170459868 - L1MB8 LINE L1 -22 6156 4868 1857 145 10 7 chr3 47577338 47577635 -170459523 - AluJo SINE Alu -13 299 2 2247 259 93 26 chr3 47577644 47578474 -170458684 - HAL1 LINE L1 -1513 994 98 1942 150 3 26 chr3 47578474 47578787 -170458371 - AluSx SINE Alu 0 312 7 2247 259 93 26 chr3 47578787 47578863 -170458295 - HAL1 LINE L1 -2409 98 28 1371 220 0 19 chr3 47578863 47579131 -170458027 - AluJb SINE Alu -49 263 1 2131 141 0 7 chr3 47579143 47579442 -170457716 - AluSx SINE Alu -15 297 1 582 249 245 12 chr3 47579561 47579818 -170457340 - L2 LINE L2 -13 3300 2984 237 272 24 80 chr3 47579852 47579977 -170457181 - MER5B DNA MER1_type -60 118 1 181 150 100 0 chr3 47580661 47580701 -170456457 + L2 LINE L2 3270 3313 0 36 0 0 0 chr3 47581875 47581911 -170455247 + AT_rich Low_complexity Low_complexity 1 36 0 186 300 83 0 chr3 47582257 47582317 -170454841 + MIR SINE MIR 60 124 -138 586 213 63 86 chr3 47582338 47582400 -170454758 + MER5B DNA MER1_type 6 68 -110 1999 115 7 11 chr3 47582400 47582702 -170454456 + AluSg SINE Alu 5 305 0 586 213 63 86 chr3 47582702 47582812 -170454346 + MER5B DNA MER1_type 68 175 -3 783 195 19 13 chr3 47583184 47583343 -170453815 + Tigger3(Golem) DNA MER2_type 2879 3038 0 366 179 61 65 chr3 47583526 47583652 -170453506 - L1MEd LINE L1 -4866 1506 1271 360 0 0 0 chr3 47583680 47583720 -170453438 + (TG)n Simple_repeat Simple_repeat 1 40 0 277 191 64 21 chr3 47583740 47583834 -170453324 - L1MEd LINE L1 -5002 1370 1273 982 235 35 22 chr3 47583834 47584064 -170453094 + MIR SINE MIR 5 237 -25 2383 170 65 29 chr3 47584209 47584762 -170452396 - L1MD3 LINE L1 -19 7976 7404 297 185 0 0 chr3 47584763 47584817 -170452341 - MLT1F1 LTR MaLR -443 124 71 500 289 98 40 chr3 47584817 47585295 -170451863 - L1MEd LINE L1 -5168 1204 699 437 356 24 16 chr3 47585309 47585559 -170451599 - L1MEd LINE L1 -5731 641 390 1624 162 84 14 chr3 47586906 47587277 -170449881 + L1MB3 LINE L1 5787 6183 0 2193 102 7 26 chr3 47587518 47587823 -170449335 + AluSp SINE Alu 1 299 -14 1645 132 58 44 chr3 47587839 47588134 -170449024 + AluJo SINE Alu 5 303 -9 237 318 77 82 chr3 47588646 47588678 -170448480 - L2 LINE L2 -921 2393 2362 2321 196 66 4 chr3 47588678 47589163 -170447995 + LTR53 LTR ERVL 5 519 0 237 318 77 82 chr3 47589163 47589300 -170447858 - L2 LINE L2 -952 2362 2225 777 189 0 0 chr3 47589849 47589981 -170447177 + FLAM_C SINE Alu 1 132 -1 261 267 0 27 chr3 47590249 47590324 -170446834 + MIR SINE MIR 58 130 -132 1796 175 3 0 chr3 47591154 47591439 -170445719 + AluJo SINE Alu 1 286 -26 405 0 0 0 chr3 47591439 47591484 -170445674 + (CAT)n Simple_repeat Simple_repeat 2 46 0 714 216 60 50 chr3 47591611 47591810 -170445348 + MIR SINE MIR 62 262 0 185 304 96 26 chr3 47592344 47592459 -170444699 - L2 LINE L2 -71 3242 3120 3841 135 23 69 chr3 47592472 47593512 -170443646 + L1MB3 LINE L1 5024 6027 -156 1199 128 14 24 chr3 47593512 47593754 -170443404 + AluSg/x SINE Alu 76 315 0 750 257 149 31 chr3 47593760 47594454 -170442704 - L1ME LINE L1 -368 5802 5035 242 231 87 39 chr3 47595925 47596029 -170441129 + L1ME LINE L1 5685 5793 -2015 186 314 66 74 chr3 47596854 47596975 -170440183 + L2 LINE L2 3134 3253 -19 277 247 151 7 chr3 47597209 47597357 -170439801 + L1ME LINE L1 5713 5880 -286 2418 200 6 12 chr3 47597539 47598053 -170439105 - L1MC3 LINE L1 -15 7770 7260 873 208 37 2 chr3 47599093 47599266 -170437892 + MER5B DNA MER1_type 8 174 -4 364 301 88 26 chr3 47599369 47599675 -170437483 + L1MEd LINE L1 45 369 -5750 1405 239 53 72 chr3 47599918 47600390 -170436768 - HERVL40 LTR ERVL -2970 2560 2098 2460 209 57 23 chr3 47600406 47601053 -170436105 + L1MCa LINE L1 31 699 -5727 937 126 74 30 chr3 47601068 47601342 -170435816 + L1MCa LINE L1 1469 1835 -4591 2270 55 42 7 chr3 47601342 47601631 -170435527 + AluY SINE Alu 1 299 -12 377 145 0 0 chr3 47601631 47601700 -170435458 + L1MCa LINE L1 2252 2320 -4106 741 120 0 0 chr3 47601701 47601801 -170435357 + AluJb SINE Alu 1 100 -212 232 114 0 68 chr3 47601801 47601845 -170435313 + MER5B DNA MER1_type 28 68 -110 996 189 6 11 chr3 47601851 47602026 -170435132 + AluJb SINE Alu 107 280 -32 291 190 0 0 chr3 47602251 47602309 -170434849 + (CA)n Simple_repeat Simple_repeat 2 59 0 2411 94 0 0 chr3 47602341 47602648 -170434510 - AluY SINE Alu -4 307 1 289 167 26 39 chr3 47602890 47602968 -170434190 + Tigger5 DNA MER2_type 2247 2323 0 365 179 32 24 chr3 47603292 47603415 -170433743 + GA-rich Low_complexity Low_complexity 1 124 0 600 215 7 14 chr3 47603427 47603571 -170433587 + MLT1J LTR MaLR 69 211 -300 795 128 22 84 chr3 47603586 47603765 -170433393 - MER20 DNA MER1_type -14 205 38 269 284 142 43 chr3 47603851 47603992 -170433166 + MLT1J LTR MaLR 293 447 -64 889 243 87 0 chr3 47604008 47604214 -170432944 + MER58A DNA MER1_type 1 224 0 1024 249 49 4 chr3 47604225 47604470 -170432688 - MIR SINE MIR 0 262 7 269 276 23 11 chr3 47604952 47605039 -170432119 + MARNA DNA Mariner 137 224 -362 250 249 99 39 chr3 47605328 47605509 -170431649 + L1M4 LINE L1 47 238 -6304 10800 143 42 2 chr3 47605908 47607690 -170429468 + L1M1 LINE L1 27 1878 -5687 1149 154 34 68 chr3 47607692 47607767 -170429391 + AluJo SINE Alu 73 149 -163 3947 170 53 57 chr3 47607767 47608725 -170428433 - LTR13 LTR ERVK 0 954 1 1149 154 34 68 chr3 47608725 47608883 -170428275 + AluJo SINE Alu 149 298 -14 273 319 179 13 chr3 47608960 47609261 -170427897 + L2 LINE L2 651 1001 -2313 1792 141 20 46 chr3 47609390 47609551 -170427607 - AluJo SINE Alu -15 297 146 2311 87 7 0 chr3 47609551 47609840 -170427318 - AluY SINE Alu -20 291 1 1792 141 20 46 chr3 47609840 47609983 -170427175 - AluJo SINE Alu -166 146 1 707 215 0 0 chr3 47610064 47610194 -170426964 + FLAM_A SINE Alu 1 130 -3 335 263 137 37 chr3 47610194 47610456 -170426702 + L1ME4a LINE L1 5322 5608 -513 21 0 0 0 chr3 47610473 47610494 -170426664 + AT_rich Low_complexity Low_complexity 1 21 0 549 288 0 7 chr3 47610720 47610873 -170426285 + L1M4 LINE L1 158 309 -6335 406 240 32 58 chr3 47610901 47611055 -170426103 + L1M4 LINE L1 295 444 -6200 250 290 40 10 chr3 47611284 47611384 -170425774 + L1M4 LINE L1 900 1002 -5645 780 281 0 21 chr3 47611462 47611697 -170425461 + L1M4 LINE L1 919 1148 -5499 1470 145 157 4 chr3 47611740 47612002 -170425156 + AluJo SINE Alu 1 302 0 270 258 180 9 chr3 47612012 47612229 -170424929 + L1ME4a LINE L1 5813 6066 -55 456 280 68 70 chr3 47613553 47614025 -170423133 + HAL1 LINE L1 12 482 -2025 389 308 43 0 chr3 47615145 47615262 -170421896 - MER5A DNA MER1_type -5 184 63 315 278 56 32 chr3 47615171 47615297 -170421861 + MER5A DNA MER1_type 43 171 -18 * 21 0 0 0 chr3 47616478 47616499 -170420659 + AT_rich Low_complexity Low_complexity 1 21 0 1529 179 47 20 chr3 47616704 47617001 -170420157 - AluJo SINE Alu -7 305 1 24 0 0 0 chr3 47617630 47617654 -170419504 + AT_rich Low_complexity Low_complexity 1 24 0 489 302 59 27 chr3 47618059 47618293 -170418865 - MIR SINE MIR -2 260 18 863 250 77 61 chr3 47618805 47619903 -170417255 + L1MC4 LINE L1 6645 7612 -430 1648 145 10 71 chr3 47619903 47620213 -170416945 + AluJo SINE Alu 1 291 -21 863 250 77 61 chr3 47620213 47620247 -170416911 + L1MC4 LINE L1 7612 7644 -398 472 288 52 97 chr3 47621156 47621423 -170415735 + L2 LINE L2 2926 3180 -92 420 261 200 8 chr3 47621466 47621596 -170415562 + L2 LINE L2 3117 3271 -1 246 234 175 124 chr3 47622237 47622374 -170414784 - L2 LINE L2 -1 3312 3169 186 382 132 10 chr3 47622556 47622760 -170414398 - L2 LINE L2 -493 2821 2593 493 231 67 0 chr3 47622774 47622908 -170414250 + L1MD3 LINE L1 7843 7985 -10 874 122 0 23 chr3 47623382 47623513 -170413645 + FLAM_C SINE Alu 1 128 -5 21 0 0 0 chr3 47623513 47623534 -170413624 + AT_rich Low_complexity Low_complexity 1 21 0 282 189 158 0 chr3 47623938 47624033 -170413125 - MER112 DNA MER1_type -6 254 145 3866 157 40 6 chr3 47624256 47624963 -170412195 + L1MB7 LINE L1 5454 6184 0 1915 159 3 16 chr3 47625291 47625606 -170411552 - AluJb SINE Alu 0 312 2 1834 159 7 13 chr3 47625665 47625966 -170411192 - AluSx SINE Alu -13 299 1 403 150 0 0 chr3 47626136 47626196 -170410962 - Alu SINE Alu -19 293 234 755 105 0 0 chr3 47626210 47626315 -170410843 + AluSg/x SINE Alu 186 290 -22 191 290 32 16 chr3 47626372 47626434 -170410724 + MIR3 SINE MIR 13 75 -133 228 265 118 35 chr3 47627666 47627836 -170409322 + L1MB7 LINE L1 5704 5887 -1921 200 233 0 0 chr3 47628223 47628266 -170408892 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 778 269 3 77 chr3 47628444 47628794 -170408364 + L1MDa LINE L1 21 344 -6196 2514 183 10 83 chr3 47629004 47629203 -170407955 + L1MDa LINE L1 853 1065 -5478 745 182 0 15 chr3 47629203 47629335 -170407823 + FLAM_A SINE Alu 1 130 -3 2514 183 10 83 chr3 47629335 47629573 -170407585 + L1MDa LINE L1 1065 1219 -5324 2187 98 20 7 chr3 47629573 47629868 -170407290 + AluSg SINE Alu 1 299 -11 2514 183 10 83 chr3 47629868 47630155 -170407003 + L1MDa LINE L1 1219 1525 -5018 1099 134 87 35 chr3 47630155 47630386 -170406772 + MLT1D LTR MaLR 1 243 -262 2066 143 3 10 chr3 47630389 47630697 -170406461 + AluJb SINE Alu 1 306 -6 681 206 52 16 chr3 47630728 47630922 -170406236 + L1MB7 LINE L1 5825 6025 -159 297 186 68 0 chr3 47630922 47630981 -170406177 + Tigger2a DNA MER2_type 1 63 -371 874 144 8 0 chr3 47630981 47631113 -170406045 + AluSq/x SINE Alu 2 134 -178 1995 154 3 0 chr3 47631115 47631413 -170405745 + AluSx SINE Alu 1 299 -13 933 178 0 84 chr3 47631413 47631615 -170405543 - MER8 DNA MER2_type -53 186 2 764 115 108 0 chr3 47631615 47631754 -170405404 + L1MB7 LINE L1 6023 6176 -8 1710 184 7 19 chr3 47631755 47631893 -170405265 + AluJo SINE Alu 1 139 -173 1968 153 7 0 chr3 47631893 47632193 -170404965 + AluJb SINE Alu 1 302 -10 1710 184 7 19 chr3 47632193 47632364 -170404794 + AluJo SINE Alu 139 306 -6 1616 161 3 58 chr3 47632444 47632596 -170404562 + AluSx SINE Alu 1 129 -183 207 0 0 0 chr3 47632596 47632619 -170404539 + (TA)n Simple_repeat Simple_repeat 1 23 0 1616 161 3 58 chr3 47632619 47632777 -170404381 + AluSx SINE Alu 129 294 -18 1938 149 0 7 chr3 47632971 47633260 -170403898 + AluSx SINE Alu 1 287 -25 1910 165 0 10 chr3 47633336 47633645 -170403513 + AluJb SINE Alu 3 308 -4 225 276 11 11 chr3 47635020 47635107 -170402051 - MER112 DNA MER1_type -95 165 79 1809 154 21 3 chr3 47635621 47635907 -170401251 + AluJb SINE Alu 1 291 -21 1594 221 141 53 chr3 47636363 47636623 -170400535 + L2 LINE L2 2379 2615 -698 2160 111 7 0 chr3 47636623 47636920 -170400238 - AluSx SINE Alu -13 299 1 1594 221 141 53 chr3 47636920 47637496 -170399662 + L2 LINE L2 2615 3313 0 413 290 78 69 chr3 47637603 47637848 -170399310 - MIR SINE MIR -7 255 9 415 289 104 58 chr3 47638053 47638448 -170398710 + MLT1J LTR MaLR 99 511 0 572 299 36 26 chr3 47639160 47639354 -170397804 - MIR SINE MIR -48 214 19 1473 141 57 32 chr3 47640146 47640429 -170396729 + AluJo SINE Alu 1 290 -22 440 320 24 0 chr3 47640520 47640645 -170396513 + MIR SINE MIR 24 151 -57 1717 198 60 47 chr3 47640647 47640877 -170396281 + L1MB7 LINE L1 4960 5185 -993 2246 108 0 3 chr3 47640877 47641183 -170395975 + AluSx SINE Alu 1 305 -7 1728 175 29 19 chr3 47641191 47641500 -170395658 + AluJb SINE Alu 1 312 0 1717 198 60 47 chr3 47641500 47641618 -170395540 + L1MB7 LINE L1 5191 5306 -872 2021 121 7 0 chr3 47641618 47641929 -170395229 + AluSx SINE Alu 1 313 0 1717 198 60 47 chr3 47641929 47642356 -170394802 + L1MB7 LINE L1 5306 5758 -420 1753 174 36 6 chr3 47642361 47642723 -170394435 + L1MB7 LINE L1 5810 6182 -2 1265 212 29 7 chr3 47642727 47643034 -170394124 + L1MB7 LINE L1 5861 6174 -10 371 284 77 31 chr3 47644128 47644322 -170392836 + L2 LINE L2 2851 3053 -219 2481 63 3 0 chr3 47644407 47644710 -170392448 - AluSg SINE Alu -6 304 1 180 0 0 0 chr3 47645426 47645446 -170391712 + (CCG)n Simple_repeat Simple_repeat 3 22 0 181 69 0 35 chr3 47645776 47645805 -170391353 - L2 LINE L2 -387 2885 2858 1752 100 74 4 chr3 47646766 47647036 -170390122 + AluSx SINE Alu 1 289 -23 3519 148 33 8 chr3 47647062 47647672 -170389486 + LTR39 LTR ERV1 1 625 -158 21 36 0 0 chr3 47647737 47647765 -170389393 + AT_rich Low_complexity Low_complexity 1 28 0 356 217 117 50 chr3 47647765 47647885 -170389273 + LTR39 LTR ERV1 649 776 -7 233 73 0 24 chr3 47648363 47648404 -170388754 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 2230 110 0 3 chr3 47648410 47648710 -170388448 + AluSq SINE Alu 3 301 -12 345 146 41 53 chr3 47648711 47648882 -170388276 + (TA)n Simple_repeat Simple_repeat 2 170 0 21 71 0 0 chr3 47648888 47648930 -170388228 + AT_rich Low_complexity Low_complexity 1 42 0 218 101 51 56 chr3 47648933 47649111 -170388047 + (TA)n Simple_repeat Simple_repeat 1 177 0 394 140 27 70 chr3 47649156 47649342 -170387816 + (TA)n Simple_repeat Simple_repeat 2 179 0 394 140 27 70 chr3 47649356 47649542 -170387616 + (TA)n Simple_repeat Simple_repeat 2 179 0 394 140 27 70 chr3 47649556 47649742 -170387416 + (TA)n Simple_repeat Simple_repeat 2 179 0 394 140 27 70 chr3 47649756 47649942 -170387216 + (TA)n Simple_repeat Simple_repeat 2 179 0 394 140 27 70 chr3 47649956 47650142 -170387016 + (TA)n Simple_repeat Simple_repeat 2 179 0 394 140 27 70 chr3 47650156 47650342 -170386816 + (TA)n Simple_repeat Simple_repeat 2 179 0 394 140 27 70 chr3 47650356 47650542 -170386616 + (TA)n Simple_repeat Simple_repeat 2 179 0 394 140 27 70 chr3 47650556 47650742 -170386416 + (TA)n Simple_repeat Simple_repeat 2 179 0 394 140 27 70 chr3 47650756 47650942 -170386216 + (TA)n Simple_repeat Simple_repeat 2 179 0 394 140 27 70 chr3 47650956 47651142 -170386016 + (TA)n Simple_repeat Simple_repeat 2 179 0 394 140 27 70 chr3 47651156 47651342 -170385816 + (TA)n Simple_repeat Simple_repeat 2 179 0 394 140 27 70 chr3 47651356 47651542 -170385616 + (TA)n Simple_repeat Simple_repeat 2 179 0 413 145 29 66 chr3 47651653 47652101 -170385057 + (TA)n Simple_repeat Simple_repeat 1 431 0 343 88 53 47 chr3 47652115 47652285 -170384873 + (TA)n Simple_repeat Simple_repeat 2 172 0 382 299 47 24 chr3 47652624 47652751 -170384407 - L2 LINE L2 -22 3291 3162 2353 118 46 46 chr3 47652815 47653249 -170383909 + Tigger2a DNA MER2_type 1 434 0 1033 280 82 19 chr3 47653515 47653893 -170383265 - LTR16C LTR ERVL 0 491 90 908 268 119 22 chr3 47654989 47655399 -170381759 - MLT1J2 LTR MaLR 0 450 1 322 250 122 45 chr3 47655540 47655604 -170381554 + L1MC4a LINE L1 5759 5817 -1991 1817 176 13 0 chr3 47655604 47655905 -170381253 + AluJb SINE Alu 1 305 -7 322 250 122 45 chr3 47655905 47655996 -170381162 + L1MC4a LINE L1 5817 5926 -1882 899 229 102 21 chr3 47656185 47656557 -170380601 + L1ME LINE L1 5410 5811 -351 2096 107 7 0 chr3 47656597 47656887 -170380271 + AluSx SINE Alu 1 292 -20 318 262 172 0 chr3 47658041 47658163 -170378995 - MIR SINE MIR -30 232 90 209 233 0 0 chr3 47658173 47658216 -170378942 + MIR SINE MIR 205 247 -15 707 224 91 102 chr3 47659795 47659883 -170377275 - MLT1J LTR MaLR -20 491 404 2153 134 0 6 chr3 47659883 47660197 -170376961 + AluSx SINE Alu 1 312 0 707 224 91 102 chr3 47660197 47660470 -170376688 - MLT1J LTR MaLR -107 404 134 240 224 0 128 chr3 47660501 47660626 -170376532 - MLT1H LTR MaLR -16 533 425 376 147 13 13 chr3 47660655 47660730 -170376428 - LTR33 LTR ERVL -5 516 442 322 276 0 11 chr3 47660729 47660816 -170376342 - LTR33 LTR ERVL -344 177 92 * 1322 295 48 2 chr3 47660849 47661269 -170375889 - LTR33 LTR ERVL -82 439 1 263 265 36 0 chr3 47661269 47661349 -170375809 - MLT1K LTR MaLR -41 547 465 434 226 118 0 chr3 47661776 47661869 -170375289 - MER5A DNA MER1_type -77 112 9 1329 130 14 143 chr3 47661887 47662257 -170374901 + MER33 DNA MER1_type 3 324 0 65 25 0 0 chr3 47663324 47663403 -170373755 + AT_rich Low_complexity Low_complexity 1 79 0 1724 173 0 33 chr3 47663439 47663739 -170373419 + AluJb SINE Alu 1 290 -22 244 117 78 39 chr3 47663752 47663829 -170373329 + (TTAAA)n Simple_repeat Simple_repeat 1 80 0 665 209 13 0 chr3 47663835 47663988 -170373170 - L1MD2 LINE L1 -10 6349 6195 696 164 79 79 chr3 47663991 47664081 -170373077 - L1MD2 LINE L1 -217 6142 6053 2312 107 0 3 chr3 47664081 47664379 -170372779 - AluSg SINE Alu -13 297 1 696 164 79 79 chr3 47664379 47664502 -170372656 - L1MD2 LINE L1 -305 6054 5929 5901 178 156 110 chr3 47664505 47666804 -170370354 - L1MDa LINE L1 -4122 2418 15 3045 160 12 54 chr3 47666915 47666931 -170370227 - L1MB3 LINE L1 -281 5902 5887 2099 122 39 0 chr3 47666931 47667217 -170369941 - AluSx SINE Alu -15 297 1 3045 160 12 54 chr3 47667217 47667610 -170369548 - L1MB3 LINE L1 -296 5887 5479 315 0 0 0 chr3 47667610 47667645 -170369513 + (TA)n Simple_repeat Simple_repeat 2 36 0 3045 160 12 54 chr3 47667645 47667784 -170369374 - L1MB3 LINE L1 -704 5479 5381 1887 169 19 3 chr3 47667784 47668091 -170369067 - AluJo SINE Alu 0 312 1 3045 160 12 54 chr3 47668091 47668248 -170368910 - L1MB3 LINE L1 -802 5381 5219 21 0 0 0 chr3 47669490 47669511 -170367647 + AT_rich Low_complexity Low_complexity 1 21 0 297 299 0 0 chr3 47670145 47670232 -170366926 + (TG)n Simple_repeat Simple_repeat 1 87 0 548 254 42 0 chr3 47672279 47672421 -170364737 - MIR SINE MIR -35 227 80 266 282 14 0 chr3 47674580 47674651 -170362507 - L2 LINE L2 0 3313 3242 515 137 21 11 chr3 47676021 47676116 -170361042 - LTR5 LTR ERVK 0 969 874 4295 168 16 98 chr3 47676204 47677260 -170359898 + LTR5 LTR ERVK 1 969 0 3248 185 59 50 chr3 47677275 47678017 -170359141 - LTR5 LTR ERVK -220 749 1 244 237 280 0 chr3 47679727 47679820 -170357338 - MER5B DNA MER1_type 0 178 60 422 267 168 25 chr3 47682001 47682162 -170354996 + MIR SINE MIR 15 198 -64 187 333 0 14 chr3 47682218 47682287 -170354871 + MIR SINE MIR 194 261 -1 1869 98 127 0 chr3 47682429 47682705 -170354453 - AluY SINE Alu 0 311 1 2452 97 0 0 chr3 47683609 47683909 -170353249 + AluY SINE Alu 1 300 -11 5972 119 77 41 chr3 47687017 47687106 -170350052 + Ricksha_b DNA DNA 1 85 -2769 621 81 101 0 chr3 47687106 47687205 -170349953 + HY1 scRNA scRNA 1 109 -3 5972 119 77 41 chr3 47687205 47687888 -170349270 + Ricksha_b DNA DNA 85 742 -2112 1925 146 3 3 chr3 47687888 47688176 -170348982 - AluJb SINE Alu -24 288 1 5972 119 77 41 chr3 47688176 47688475 -170348683 + Ricksha_b DNA DNA 742 1116 -1738 2088 114 0 36 chr3 47688475 47688781 -170348377 - AluSg SINE Alu -15 295 1 5972 119 77 41 chr3 47688781 47688817 -170348341 + Ricksha_b DNA DNA 1116 1149 -105 718 186 8 0 chr3 47688821 47688945 -170348213 - FLAM_A SINE Alu -17 125 1 705 165 13 2 chr3 47688945 47689097 -170348061 + Ricksha DNA DNA 2743 3247 -13 349 230 79 40 chr3 47692526 47692652 -170344506 + MER5A DNA MER1_type 19 149 -40 288 234 94 47 chr3 47692545 47692673 -170344485 - MER5A DNA MER1_type -26 163 30 * 1795 160 32 11 chr3 47692673 47692955 -170344203 + AluJo SINE Alu 5 292 -20 190 231 19 19 chr3 47696159 47696211 -170340947 + L2 LINE L2 452 503 -2811 189 291 63 0 chr3 47697118 47697197 -170339961 + L2 LINE L2 3133 3216 -56 787 164 0 15 chr3 47698379 47698513 -170338645 - FLAM_C SINE Alu 0 133 2 1902 160 0 0 chr3 47698790 47699095 -170338063 - AluJb SINE Alu 0 306 2 316 214 65 54 chr3 47699227 47699417 -170337741 - L1MC/D LINE L1 -714 5437 5319 361 246 0 0 chr3 47701430 47701499 -170335659 + MER63 DNA MER1_type 988 1056 -4 192 200 0 0 chr3 47701501 47701546 -170335612 + (TG)n Simple_repeat Simple_repeat 2 46 0 319 222 0 42 chr3 47701546 47701618 -170335540 + L1MCa LINE L1 1995 2063 -4363 537 211 0 0 chr3 47701625 47701748 -170335410 + (TG)n Simple_repeat Simple_repeat 2 124 0 928 223 16 20 chr3 47704942 47705189 -170331969 + L1M4 LINE L1 4157 4402 -1744 892 229 213 35 chr3 47705265 47705622 -170331536 - L1MCb LINE L1 -5749 296 2 796 216 21 110 chr3 47705631 47705738 -170331420 + MLT2C1 LTR ERVL 82 197 -200 2303 122 0 0 chr3 47705738 47706042 -170331116 - AluSx SINE Alu -8 304 1 796 216 21 110 chr3 47706042 47706225 -170330933 + MLT2C1 LTR ERVL 197 346 -51 4434 214 41 35 chr3 47706327 47708042 -170329116 + L1MCa LINE L1 2013 3735 -2691 2210 104 0 0 chr3 47708068 47708347 -170328811 - AluSx SINE Alu -33 279 1 3074 163 58 16 chr3 47708388 47708953 -170328205 + Tigger1 DNA MER2_type 1 589 -1829 1197 210 19 0 chr3 47709266 47709533 -170327625 + L1PB4 LINE L1 5885 6156 0 385 267 81 47 chr3 47709978 47710150 -170327008 + HAL1 LINE L1 910 1087 -1420 276 253 44 33 chr3 47710501 47710592 -170326566 + MLT1K LTR MaLR 497 588 0 324 324 15 6 chr3 47710781 47710933 -170326225 + L1ME LINE L1 5450 5577 -544 1789 103 5 0 chr3 47711122 47711346 -170325812 - AluSg SINE Alu -84 226 2 477 227 23 47 chr3 47711360 47711532 -170325626 + L1MC5 LINE L1 7764 7931 -30 262 284 43 56 chr3 47711640 47711802 -170325356 - L1ME LINE L1 -376 5794 5635 246 208 148 10 chr3 47711875 47711976 -170325182 + L1ME4a LINE L1 5974 6088 -33 258 275 141 20 chr3 47713157 47713306 -170323852 + MIR3 SINE MIR 20 186 -22 704 229 154 0 chr3 47718443 47718618 -170318540 + MER3 DNA MER1_type 1 202 -7 450 176 0 0 chr3 47719167 47719252 -170317906 + GA-rich Low_complexity Low_complexity 3 87 0 438 264 14 14 chr3 47719948 47720092 -170317066 + L1MC4a LINE L1 5327 5470 -2338 3730 146 49 74 chr3 47720136 47720456 -170316702 - L1MA8 LINE L1 -281 6010 5684 425 129 0 0 chr3 47720456 47720518 -170316640 + FRAM SINE Alu 59 120 -56 3730 146 49 74 chr3 47720518 47721042 -170316116 - L1MA8 LINE L1 -607 5684 5145 1814 141 46 23 chr3 47721042 47721347 -170315811 - AluJo SINE Alu 0 312 1 3730 146 49 74 chr3 47721347 47721566 -170315592 - L1MA8 LINE L1 -1146 5145 4922 512 200 34 97 chr3 47721543 47721718 -170315440 + L1MC5 LINE L1 7738 7901 -60 * 1090 301 96 15 chr3 47721750 47722284 -170314874 + L1MC4a LINE L1 5476 6052 -1756 1387 211 3 56 chr3 47722323 47722646 -170314512 - AluJo SINE Alu -6 306 1 180 163 0 0 chr3 47723479 47723522 -170313636 + A-rich Low_complexity Low_complexity 1 43 0 1266 160 26 9 chr3 47724735 47724966 -170312192 + L1MC4 LINE L1 6730 6964 -1078 2425 188 64 106 chr3 47724997 47725446 -170311712 + L1MC4 LINE L1 7206 7603 -439 2091 131 34 0 chr3 47725446 47725744 -170311414 + AluSx SINE Alu 1 308 -4 2425 188 64 106 chr3 47725744 47726166 -170310992 + L1MC4 LINE L1 7603 8041 -1 583 231 30 98 chr3 47726195 47726429 -170310729 - MIR SINE MIR -26 236 19 274 343 42 0 chr3 47727579 47727722 -170309436 - MIR3 SINE MIR -30 178 30 2554 26 3 7 chr3 47728895 47729199 -170307959 + L1PA5 LINE L1 5845 6147 -7 22 0 0 0 chr3 47729199 47729221 -170307937 + AT_rich Low_complexity Low_complexity 1 22 0 198 280 104 24 chr3 47729618 47729743 -170307415 - MIR SINE MIR -58 204 70 1631 165 11 22 chr3 47729964 47730237 -170306921 + AluJo SINE Alu 13 282 -30 189 0 0 0 chr3 47730244 47730265 -170306893 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 683 286 77 45 chr3 47730354 47730690 -170306468 + L3 LINE CR1 607 953 -624 186 314 33 58 chr3 47730899 47731020 -170306138 + L3 LINE CR1 1263 1380 -197 1949 136 11 3 chr3 47731245 47731532 -170305626 + AluSx SINE Alu 6 294 -18 361 246 132 97 chr3 47731675 47732017 -170305141 + L1MC4 LINE L1 7687 8040 -2 188 0 74 0 chr3 47733381 47733408 -170303750 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 189 0 0 0 chr3 47734135 47734156 -170303002 + (A)n Simple_repeat Simple_repeat 1 21 0 2084 146 0 3 chr3 47734910 47735218 -170301940 - AluJb SINE Alu -5 307 1 420 259 170 0 chr3 47735643 47735778 -170301380 + MIR SINE MIR 90 247 -15 940 190 0 12 chr3 47736254 47736417 -170300741 + FRAM SINE Alu 1 157 -19 2247 95 3 10 chr3 47737213 47737509 -170299649 + AluSx SINE Alu 6 299 -13 2066 104 14 0 chr3 47738075 47738378 -170298780 + AluSp SINE Alu 1 307 0 185 211 267 11 chr3 47739965 47740055 -170297103 + MIR SINE MIR 30 142 -66 354 322 83 15 chr3 47741954 47742159 -170294999 + MIR SINE MIR 38 256 -6 4667 186 124 14 chr3 47743352 47744497 -170292661 + L1MC4 LINE L1 6771 8041 -1 195 139 0 0 chr3 47744651 47744687 -170292471 + (TA)n Simple_repeat Simple_repeat 2 37 0 328 286 27 18 chr3 47745680 47745792 -170291366 + HAL1 LINE L1 1631 1743 -764 2080 130 3 7 chr3 47745794 47746087 -170291071 + AluSx SINE Alu 1 292 -20 606 250 108 17 chr3 47746254 47746486 -170290672 + L2 LINE L2 1975 2227 -1087 626 288 220 14 chr3 47746489 47747126 -170290032 + L2 LINE L2 2526 3308 -5 223 182 0 23 chr3 47747126 47747170 -170289988 + GA-rich Low_complexity Low_complexity 4 46 0 227 282 90 0 chr3 47747170 47747248 -170289910 + HAL1 LINE L1 1852 1936 -571 738 300 36 4 chr3 47747505 47747755 -170289403 - MER102b DNA MER1_type -3 338 81 1439 211 0 18 chr3 47747770 47748055 -170289103 + AluJo SINE Alu 12 291 -21 231 175 18 18 chr3 47748165 47748222 -170288936 + HAL1b LINE L1 747 803 -545 420 314 146 0 chr3 47748946 47749166 -170287992 - MIR SINE MIR 0 262 11 184 381 12 0 chr3 47749511 47749595 -170287563 - L2 LINE L2 -626 2688 2604 51 31 0 0 chr3 47750125 47750190 -170286968 + AT_rich Low_complexity Low_complexity 1 65 0 1629 226 83 22 chr3 47750190 47751396 -170285762 - L1MC4 LINE L1 -5 8037 6698 2250 93 6 10 chr3 47752689 47753000 -170284158 - AluSg SINE Alu 0 310 1 305 283 91 98 chr3 47753482 47753768 -170283390 + L2 LINE L2 2988 3271 -1 1167 95 0 0 chr3 47754665 47754812 -170282346 - AluSg/x SINE Alu -12 298 152 1674 112 78 58 chr3 47754883 47755178 -170281980 - AluSx SINE Alu -11 301 1 30 0 0 24 chr3 47755256 47755269 -170281889 + AT_rich Low_complexity Low_complexity 1 13 -27 760 80 0 0 chr3 47755269 47755369 -170281789 + HY3 scRNA scRNA 1 100 -1 30 0 0 24 chr3 47755369 47755396 -170281762 + AT_rich Low_complexity Low_complexity 13 40 0 1249 223 60 34 chr3 47755457 47755923 -170281235 + L1MC5 LINE L1 7370 7847 -114 2165 109 7 3 chr3 47756115 47756419 -170280739 + AluSg SINE Alu 1 305 -5 1687 193 10 3 chr3 47756471 47756761 -170280397 - AluJo SINE Alu -20 292 1 807 212 0 38 chr3 47757773 47757957 -170279201 - MER5B DNA MER1_type 0 178 2 494 239 60 96 chr3 47758034 47758368 -170278790 + L1MC4 LINE L1 7595 7916 -126 22 0 0 0 chr3 47758423 47758445 -170278713 + AT_rich Low_complexity Low_complexity 1 22 0 638 242 0 0 chr3 47758445 47758565 -170278593 + FRAM SINE Alu 1 114 -62 1099 162 4 73 chr3 47758565 47758624 -170278534 + AluSg/x SINE Alu 85 146 -166 2240 101 13 0 chr3 47758624 47758930 -170278228 + AluSx SINE Alu 1 310 -2 1099 162 4 73 chr3 47758930 47759104 -170278054 + AluSg/x SINE Alu 146 302 -10 260 382 43 51 chr3 47760483 47760834 -170276324 - L1MEd LINE L1 -5450 669 322 768 194 0 0 chr3 47761076 47761205 -170275953 + FLAM_A SINE Alu 4 132 -1 283 251 102 124 chr3 47762004 47762269 -170274889 + L2 LINE L2 2824 3074 -239 1815 161 31 0 chr3 47762269 47762555 -170274603 - AluJb SINE Alu -17 295 1 283 251 102 124 chr3 47762555 47762780 -170274378 + L2 LINE L2 3074 3303 -10 449 253 97 8 chr3 47763885 47764013 -170273145 - L2 LINE L2 0 3313 3134 1538 148 37 61 chr3 47764787 47765084 -170272074 - AluJo SINE Alu -18 294 5 489 234 23 23 chr3 47765085 47765213 -170271945 + MIR SINE MIR 127 254 -8 2260 107 10 0 chr3 47765646 47765937 -170271221 + AluSx SINE Alu 4 297 -15 217 315 0 0 chr3 47766294 47766348 -170270810 - L2 LINE L2 -18 3295 3242 216 218 91 0 chr3 47766463 47766518 -170270640 + MIR3 SINE MIR 110 169 -39 230 308 0 46 chr3 47766673 47766738 -170270420 + L3 LINE CR1 1497 1558 -19 205 333 9 57 chr3 47767124 47767229 -170269929 - MER5B DNA MER1_type -76 102 3 357 24 0 0 chr3 47768017 47768059 -170269099 + (TG)n Simple_repeat Simple_repeat 2 43 0 26 0 0 0 chr3 47768126 47768152 -170269006 + AT_rich Low_complexity Low_complexity 1 26 0 30 0 0 0 chr3 47769599 47769629 -170267529 + AT_rich Low_complexity Low_complexity 1 30 0 216 0 0 0 chr3 47775102 47775126 -170262032 + (A)n Simple_repeat Simple_repeat 1 24 0 324 64 0 0 chr3 47777282 47777329 -170259829 + (TAA)n Simple_repeat Simple_repeat 2 48 0 312 213 40 0 chr3 47780062 47780137 -170257021 + MER116 DNA Mariner 1 78 -2 629 301 0 18 chr3 47780235 47780401 -170256757 + MIR SINE MIR 76 238 -24 554 241 126 11 chr3 47780421 47780612 -170256546 + Charlie1 DNA MER1_type 1 213 -2548 310 198 198 0 chr3 47780613 47780709 -170256449 + Charlie1 DNA MER1_type 2647 2761 0 240 395 15 0 chr3 47781872 47782006 -170255152 - MIR3 SINE MIR -32 176 41 221 204 122 82 chr3 47783980 47784078 -170253080 + MER5A DNA MER1_type 63 164 -25 2314 94 0 0 chr3 47786610 47786898 -170250260 + AluSq SINE Alu 1 288 -25 330 154 0 77 chr3 47786993 47787071 -170250087 + MIR SINE MIR 160 231 -31 215 185 15 31 chr3 47787710 47787775 -170249383 + (CA)n Simple_repeat Simple_repeat 1 64 0 808 241 117 10 chr3 47788909 47789140 -170248018 - MIR SINE MIR -10 252 4 271 303 11 0 chr3 47789313 47789402 -170247756 - L1ME LINE L1 -543 5627 5538 343 247 137 6 chr3 47789426 47789608 -170247550 - L1ME LINE L1 -715 5463 5258 304 343 9 9 chr3 47789615 47789723 -170247435 - L1MDa LINE L1 -3734 2806 2699 393 276 99 5 chr3 47790291 47790483 -170246675 - HAL1 LINE L1 -856 1651 1442 1949 289 116 24 chr3 47790534 47791682 -170245476 - L1MEd LINE L1 -4862 1257 4 1435 284 102 11 chr3 47791883 47792510 -170244648 + HAL1 LINE L1 3 686 -1821 1673 199 0 7 chr3 47792622 47792914 -170244244 + AluJb SINE Alu 7 296 -16 390 323 68 68 chr3 47792949 47793031 -170244127 - L1MDa LINE L1 -4194 2527 2446 1789 169 3 10 chr3 47793031 47793327 -170243831 - AluJo SINE Alu -18 294 1 390 323 68 68 chr3 47793327 47793339 -170243819 - L1MDa LINE L1 -4275 2446 2435 2132 106 17 0 chr3 47793339 47793631 -170243527 - AluSp SINE Alu -16 297 1 390 323 68 68 chr3 47793631 47793860 -170243298 - L1MDa LINE L1 -4285 2436 2203 854 290 98 29 chr3 47793863 47793994 -170243164 - L1MDa LINE L1 -4587 2134 2014 2358 97 0 3 chr3 47793994 47794294 -170242864 + AluSg SINE Alu 1 299 -11 854 290 98 29 chr3 47794294 47794307 -170242851 - L1MDa LINE L1 -4707 2014 2003 2532 122 44 2 chr3 47794307 47794716 -170242442 - L1MA6 LINE L1 -10 6290 5865 854 290 98 29 chr3 47794716 47795361 -170241797 - L1MDa LINE L1 -4718 2003 1257 2334 100 3 7 chr3 47795380 47795681 -170241477 - AluSg SINE Alu -10 300 1 764 171 0 16 chr3 47795894 47796023 -170241135 - FLAM_A SINE Alu -6 127 1 1352 215 32 81 chr3 47796638 47797047 -170240111 + MLT1B LTR MaLR 2 390 0 329 317 39 19 chr3 47798047 47798151 -170239007 + L1MC4a LINE L1 5734 5839 -1969 1004 223 25 49 chr3 47798200 47798527 -170238631 + L1ME3A LINE L1 5843 6161 -9 2265 78 0 7 chr3 47798559 47798888 -170238270 - AluY SINE Alu 0 327 1 21 36 0 0 chr3 47799076 47799104 -170238054 + AT_rich Low_complexity Low_complexity 1 28 0 959 167 34 98 chr3 47801728 47801962 -170235196 + MER20 DNA MER1_type 1 219 0 251 254 0 17 chr3 47802460 47802519 -170234639 + Charlie4 DNA MER1_type 1882 1939 -22 612 203 97 62 chr3 47803395 47803589 -170233569 + MER33 DNA MER1_type 4 209 -2376 2161 108 3 0 chr3 47803589 47803877 -170233281 - AluSc SINE Alu -20 289 1 612 203 97 62 chr3 47803877 47803909 -170233249 + MER33 DNA MER1_type 209 238 -86 1371 202 24 65 chr3 47803920 47804291 -170232867 + MLT1A2 LTR MaLR 19 374 0 26 98 0 0 chr3 47806482 47806564 -170230594 + GC_rich Low_complexity Low_complexity 1 82 0 36 87 0 0 chr3 47806649 47806741 -170230417 + GC_rich Low_complexity Low_complexity 1 92 0 26 50 0 0 chr3 47806752 47806792 -170230366 + GC_rich Low_complexity Low_complexity 1 40 0 195 256 0 0 chr3 47807253 47807296 -170229862 + MIR SINE MIR 111 153 -109 331 196 31 3 chr3 47807916 47807984 -170229174 + MIR SINE MIR 98 150 -58 1948 118 20 27 chr3 47808044 47808341 -170228817 + AluSx SINE Alu 1 295 -17 677 274 40 13 chr3 47808869 47809095 -170228063 + L2 LINE L2 2233 2464 -850 2102 122 7 0 chr3 47809126 47809414 -170227744 - AluSq SINE Alu -1 312 23 2033 157 17 44 chr3 47809414 47809827 -170227331 + LOR1b LTR ERV1 60 461 0 344 265 163 74 chr3 47809840 47810055 -170227103 + L2 LINE L2 2488 2721 -593 618 252 57 41 chr3 47810896 47811142 -170226016 - MLT1I LTR MaLR -2 407 158 839 165 0 8 chr3 47811222 47811355 -170225803 + AluJo/FLAM SINE Alu 2 133 -169 2199 115 0 10 chr3 47811358 47811646 -170225512 + AluSc SINE Alu 1 285 -24 38 0 0 0 chr3 47811650 47811688 -170225470 + AT_rich Low_complexity Low_complexity 1 38 0 664 296 45 33 chr3 47811883 47812306 -170224852 + L1MEc LINE L1 502 929 -5467 435 167 17 1 chr3 47812317 47812420 -170224738 - L1MA4A LINE L1 -6 6294 6186 4420 150 21 22 chr3 47812426 47812702 -170224456 - L1MA4A LINE L1 -183 6120 5845 811 148 0 63 chr3 47812702 47812844 -170224314 - FLAM_C SINE Alu 0 133 1 4420 150 21 22 chr3 47812844 47813160 -170223998 - L1MA4A LINE L1 -458 5845 5530 1745 173 0 23 chr3 47813160 47813467 -170223691 + AluJo SINE Alu 1 300 -12 4420 150 21 22 chr3 47813467 47814313 -170222845 - L1MA4A LINE L1 -773 5530 4683 1439 114 6 153 chr3 47814315 47814649 -170222509 + LTR12 LTR ERV1 1 285 -429 344 194 0 0 chr3 47814650 47814722 -170222436 + LTR30 LTR ERV1 553 624 -98 703 166 43 80 chr3 47814725 47814888 -170222270 + pTR5 LTR ERV1 288 444 -1994 * 33986 107 23 14 chr3 47814863 47819738 -170217420 + HERV9 LTR ERV1 55 4974 -3425 2772 162 88 81 chr3 47819705 47820599 -170216559 + HERV9 LTR ERV1 840 1740 -5156 * 5373 116 11 16 chr3 47820578 47821002 -170216156 + HERV9 LTR ERV1 7604 8024 -375 2411 88 0 0 chr3 47821002 47821299 -170215859 - AluY SINE Alu -14 297 1 5373 116 11 16 chr3 47821299 47821674 -170215484 + HERV9 LTR ERV1 8024 8399 0 1521 142 16 30 chr3 47821674 47822038 -170215120 + LTR12 LTR ERV1 1 2032 -406 338 236 11 0 chr3 47822039 47822128 -170215030 + LTR30 LTR ERV1 553 642 -80 687 120 0 0 chr3 47822131 47822231 -170214927 + LTR12 LTR ERV1 615 714 0 11797 184 25 30 chr3 47822231 47822554 -170214604 - L1MA4A LINE L1 -1462 4684 4361 1606 157 36 32 chr3 47822554 47822707 -170214451 - AluJo SINE Alu -30 282 126 2159 99 49 0 chr3 47822707 47822991 -170214167 - AluSc SINE Alu -11 298 1 1606 157 36 32 chr3 47822991 47823118 -170214040 - AluJo SINE Alu -186 126 1 11797 184 25 30 chr3 47823118 47823718 -170213440 - L1MA4A LINE L1 -1785 4361 3759 2231 105 0 14 chr3 47823718 47824065 -170213093 - AluSx SINE Alu 0 312 1 11797 184 25 30 chr3 47824065 47825439 -170211719 - L1MA4A LINE L1 -2387 3759 2379 189 0 0 0 chr3 47825439 47825460 -170211698 + (TG)n Simple_repeat Simple_repeat 2 22 0 11797 184 25 30 chr3 47825460 47825659 -170211499 - L1MA4A LINE L1 -3767 2379 2180 1671 173 4 14 chr3 47825659 47825936 -170211222 - AluSx SINE Alu -38 274 1 11797 184 25 30 chr3 47825936 47826522 -170210636 - L1MA4A LINE L1 -3966 2180 1676 2109 141 59 8 chr3 47826537 47826892 -170210266 + THE1C LTR MaLR 1 373 -2 10163 109 58 11 chr3 47826894 47828213 -170208945 + THE1C-int LTR MaLR 1 1402 -178 2087 125 7 0 chr3 47828213 47828500 -170208658 - AluSc SINE Alu -20 289 1 10163 109 58 11 chr3 47828500 47828688 -170208470 + THE1C-int LTR MaLR 1402 1580 0 784 115 0 0 chr3 47828719 47828832 -170208326 + THE1C-int LTR MaLR 1298 1410 -170 1178 174 108 19 chr3 47828834 47829092 -170208066 + THE1C LTR MaLR 35 315 -60 11205 46 7 0 chr3 47829092 47831224 -170205934 + L1PA6 LINE L1 4007 6150 -4 1013 129 0 7 chr3 47831230 47831377 -170205781 + MLT1B LTR MaLR 245 390 0 1626 257 46 5 chr3 47831446 47831859 -170205299 - LTR16A LTR ERVL 0 450 21 700 203 31 12 chr3 47831878 47832080 -170205078 + L1MCa LINE L1 2248 2504 -3962 2909 235 108 29 chr3 47832096 47832899 -170204259 + L1MCa LINE L1 2546 3451 -2975 2108 136 7 0 chr3 47832899 47833201 -170203957 + AluSx SINE Alu 1 304 -8 2909 235 108 29 chr3 47833201 47833439 -170203719 + L1MCa LINE L1 3451 3669 -2757 478 98 232 0 chr3 47833452 47833534 -170203624 + AluJ/FLAM SINE Alu 2 102 -210 1921 207 60 34 chr3 47833534 47834031 -170203127 - MER9 LTR ERVK 0 511 2 24571 142 27 33 chr3 47834032 47837419 -170199739 - HERVK9 LTR ERVK 0 5916 2558 2419 80 0 0 chr3 47837419 47837708 -170199450 + AluY SINE Alu 1 289 -22 24571 142 27 33 chr3 47837708 47838636 -170198522 - HERVK9 LTR ERVK -3358 2558 1626 3314 161 27 36 chr3 47838632 47839536 -170197622 - HERVK9 LTR ERVK -5249 667 1 * 1943 206 63 30 chr3 47839536 47840031 -170197127 - MER9 LTR ERVK 0 511 1 509 297 23 0 chr3 47840072 47840247 -170196911 + L1MCa LINE L1 3682 3860 -2566 1059 236 77 61 chr3 47840258 47840673 -170196485 + L1MCa LINE L1 4184 4608 -1818 2211 107 0 3 chr3 47840673 47840962 -170196196 + AluSc SINE Alu 1 288 -21 1059 236 77 61 chr3 47840962 47840990 -170196168 + L1MCa LINE L1 4608 4634 -1792 3650 151 41 37 chr3 47841077 47841189 -170195969 + L1MB4 LINE L1 5361 5471 -709 558 0 0 0 chr3 47841189 47841251 -170195907 + (TA)n Simple_repeat Simple_repeat 1 62 0 3650 151 41 37 chr3 47841251 47841892 -170195266 + L1MB4 LINE L1 5471 6117 -63 309 224 82 0 chr3 47842081 47842179 -170194979 + L1MCa LINE L1 4703 4808 -1618 * 1059 266 107 8 chr3 47842175 47842539 -170194619 - L1MC4a LINE L1 -1949 5859 5460 204 97 0 0 chr3 47842583 47842614 -170194544 + (CATA)n Simple_repeat Simple_repeat 2 32 0 2188 118 0 19 chr3 47842614 47842917 -170194241 - AluSx SINE Alu -13 299 1 2315 112 0 0 chr3 47842929 47843225 -170193933 - AluSg SINE Alu -12 298 3 1077 133 57 0 chr3 47843515 47843673 -170193485 - AluJb SINE Alu -145 167 1 326 315 67 13 chr3 47844037 47844351 -170192807 - L1M4 LINE L1 -3696 2450 2120 547 321 83 51 chr3 47844608 47844685 -170192473 - HAL1b LINE L1 -512 836 763 1907 114 44 83 chr3 47844685 47845032 -170192126 + THE1C LTR MaLR 3 335 -40 2218 106 10 0 chr3 47845032 47845325 -170191833 - AluSx SINE Alu -16 296 1 1907 114 44 83 chr3 47845325 47845364 -170191794 + THE1C LTR MaLR 335 374 -1 547 321 83 51 chr3 47845364 47846073 -170191085 - HAL1b LINE L1 -585 763 25 232 326 0 20 chr3 47847152 47847250 -170189908 + G-rich Low_complexity Low_complexity 2 97 0 318 323 60 6 chr3 47848143 47848310 -170188848 + L1ME4a LINE L1 5497 5672 -449 2403 98 0 3 chr3 47848535 47848841 -170188317 + AluSx SINE Alu 1 305 -7 45288 37 4 1 chr3 47849287 47855423 -170181735 - L1PA3 LINE L1 -1 6154 9 870 98 23 23 chr3 47855436 47855569 -170181589 - FLAM_C SINE Alu 0 133 1 346 240 123 34 chr3 47855576 47855755 -170181403 + L1ME4a LINE L1 5794 5988 -133 1963 142 0 32 chr3 47855978 47856289 -170180869 - AluSx SINE Alu -11 301 1 279 264 28 28 chr3 47856895 47857001 -170180157 + MER117 DNA MER1_type 56 161 -36 913 183 73 85 chr3 47857377 47857517 -170179641 + MER33 DNA MER1_type 1 141 -2444 2012 130 27 3 chr3 47857517 47857810 -170179348 - AluJb SINE Alu -12 300 1 913 183 73 85 chr3 47857810 47857997 -170179161 + MER33 DNA MER1_type 141 324 0 249 382 20 0 chr3 47858156 47858258 -170178900 - MIR SINE MIR -63 145 42 1791 201 71 75 chr3 47858412 47858933 -170178225 + LTR40a LTR ERVL 1 519 0 1639 255 46 20 chr3 47858990 47859429 -170177729 + LTR16A LTR ERVL 1 450 0 537 204 29 15 chr3 47860013 47860150 -170177008 + L1MB8 LINE L1 6040 6178 0 389 312 226 11 chr3 47860282 47860663 -170176495 + L2 LINE L2 2851 3313 0 562 272 81 0 chr3 47861171 47861344 -170175814 + HAL1 LINE L1 1475 1661 -846 1665 148 47 25 chr3 47861443 47861721 -170175437 + AluJb SINE Alu 17 300 -12 2153 86 3 71 chr3 47861756 47862082 -170175076 - AluSc SINE Alu -5 304 1 354 74 0 0 chr3 47862128 47862182 -170174976 + (CAGG)n Simple_repeat Simple_repeat 2 55 0 2390 95 3 0 chr3 47862340 47862635 -170174523 - AluSg SINE Alu -14 296 1 2461 85 3 0 chr3 47862704 47863010 -170174148 + AluY SINE Alu 1 307 -4 1022 326 101 28 chr3 47863933 47864254 -170172904 + L3 LINE CR1 584 880 -697 1186 233 133 45 chr3 47864254 47864674 -170172484 + LTR16A1 LTR ERVL 1 457 0 1022 326 101 28 chr3 47864674 47865178 -170171980 + L3 LINE CR1 880 1469 -108 1095 274 68 58 chr3 47865560 47865672 -170171486 + L1ME3A LINE L1 3957 4066 -2275 2724 183 33 40 chr3 47865672 47866218 -170170940 + MLT1F LTR MaLR 1 542 0 1095 274 68 58 chr3 47866218 47866887 -170170271 + L1ME3A LINE L1 4066 4727 -1614 2594 114 2 35 chr3 47866887 47867290 -170169868 + MLT1B LTR MaLR 1 390 0 1095 274 68 58 chr3 47867290 47867376 -170169782 + L1ME3A LINE L1 4727 4811 -1530 1686 158 27 10 chr3 47867376 47867673 -170169485 + AluJo SINE Alu 1 302 -10 1095 274 68 58 chr3 47867673 47868225 -170168933 + L1ME3A LINE L1 4811 5399 -942 2168 79 7 0 chr3 47868225 47868525 -170168633 + AluSq SINE Alu 1 302 0 1095 274 68 58 chr3 47868525 47868682 -170168476 + L1ME3A LINE L1 5399 5553 -788 415 162 15 0 chr3 47868957 47869025 -170168133 - MER20 DNA MER1_type -29 190 122 737 187 80 43 chr3 47869032 47869219 -170167939 - MLT1A1 LTR MaLR -171 194 1 506 222 67 33 chr3 47869219 47869399 -170167759 + L1ME3A LINE L1 5762 5947 -223 1886 133 19 7 chr3 47869574 47869882 -170167276 - AluSx SINE Alu 0 312 1 1477 185 13 53 chr3 47869997 47870299 -170166859 + AluJo SINE Alu 1 290 -22 1975 122 13 10 chr3 47870306 47870610 -170166548 + AluSq SINE Alu 1 305 -8 5551 24 0 6 chr3 47871198 47871825 -170165333 + SVA Other Other 764 1386 0 264 238 89 0 chr3 47872136 47872237 -170164921 - L1ME4a LINE L1 -49 6072 5963 1461 128 58 11 chr3 47872253 47872527 -170164631 - L1MA8 LINE L1 -6 6285 5999 24 53 0 0 chr3 47872530 47872568 -170164590 + AT_rich Low_complexity Low_complexity 1 38 0 216 86 0 0 chr3 47872578 47872613 -170164545 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 333 36 0 54 chr3 47872673 47872729 -170164429 + L1MD2 LINE L1 6297 6349 -10 1353 261 78 50 chr3 47872764 47873102 -170164056 + L1MEc LINE L1 1114 1441 -5280 2062 102 0 3 chr3 47873102 47873415 -170163743 + AluSx SINE Alu 3 314 0 1353 261 78 50 chr3 47873415 47873946 -170163212 + L1MEc LINE L1 1441 2008 -4713 349 301 0 9 chr3 47873953 47874066 -170163092 - L1MEc LINE L1 -4609 1787 1676 272 194 7 42 chr3 47874130 47874274 -170162884 + L1MEc LINE L1 2411 2549 -4172 246 128 0 24 chr3 47874303 47874375 -170162783 + L1MEc LINE L1 2487 2554 -3986 762 223 42 63 chr3 47874623 47874861 -170162297 + L1MC4 LINE L1 6496 6728 -1314 1057 238 59 4 chr3 47874866 47875139 -170162019 + L1MC4 LINE L1 6685 6972 -1070 308 300 79 21 chr3 47875252 47875392 -170161766 + L1 LINE L1 3442 3589 -2951 1837 130 7 0 chr3 47875498 47875782 -170161376 + AluSx SINE Alu 27 312 0 454 175 0 0 chr3 47875958 47876038 -170161120 - MER116 DNA Mariner 0 80 1 2049 128 3 7 chr3 47876405 47876742 -170160416 + AluSq SINE Alu 1 313 0 1335 150 29 68 chr3 47876961 47877268 -170159890 - AluJb SINE Alu -13 299 5 686 257 136 5 chr3 47877461 47877675 -170159483 + MIR SINE MIR 13 254 -8 457 204 109 15 chr3 47878254 47878391 -170158767 - L1ME3A LINE L1 -5 6165 6016 1619 112 134 26 chr3 47878445 47878609 -170158549 - AluJb SINE Alu -14 298 153 9333 42 2 0 chr3 47878609 47879678 -170157480 - MER11C LTR ERVK 0 1071 1 1619 112 134 26 chr3 47879678 47879782 -170157376 - AluJb SINE Alu -159 153 1 1287 276 38 8 chr3 47879793 47880163 -170156995 - L1ME3A LINE L1 -229 5941 5561 2794 122 24 19 chr3 47880520 47880946 -170156212 + MSTC LTR MaLR 1 428 0 189 74 0 0 chr3 47881575 47881602 -170155556 + (TG)n Simple_repeat Simple_repeat 1 27 0 367 337 98 29 chr3 47881742 47881947 -170155211 + MIR SINE MIR 17 235 -27 462 319 92 32 chr3 47882136 47882484 -170154674 + L2 LINE L2 2945 3313 0 557 262 82 69 chr3 47882868 47883031 -170154127 + MIR SINE MIR 20 188 -74 2035 113 26 0 chr3 47883031 47883333 -170153825 + AluSx SINE Alu 1 310 -2 557 262 82 69 chr3 47883333 47883402 -170153756 + MIR SINE MIR 188 255 -7 292 196 89 98 chr3 47883572 47883684 -170153474 + L2 LINE L2 3162 3272 0 387 309 29 37 chr3 47885160 47885296 -170151862 - MIR SINE MIR -82 180 46 215 270 61 54 chr3 47885651 47885799 -170151359 + L2 LINE L2 2923 3071 -201 981 142 6 59 chr3 47886728 47886897 -170150261 - FRAM SINE Alu -6 160 1 321 218 92 23 chr3 47886910 47886997 -170150161 + L2 LINE L2 3220 3312 -1 343 316 171 0 chr3 47887084 47887271 -170149887 + L1MC4a LINE L1 5612 5830 -1978 364 304 59 59 chr3 47887620 47887840 -170149318 + L3 LINE CR1 1142 1361 -216 1416 158 90 21 chr3 47889083 47889197 -170147961 + AluJo SINE Alu 1 106 -206 2373 54 0 7 chr3 47889197 47889494 -170147664 + AluY SINE Alu 1 295 -16 1416 158 90 21 chr3 47889494 47889658 -170147500 + AluJo SINE Alu 106 298 -14 611 263 177 11 chr3 47890024 47890199 -170146959 - MIR SINE MIR -36 226 23 225 206 0 4 chr3 47890378 47890425 -170146733 - L2 LINE L2 -18 3288 3209 330 26 0 0 chr3 47890501 47890540 -170146618 + (TG)n Simple_repeat Simple_repeat 1 39 0 1611 222 131 25 chr3 47891900 47892390 -170144768 + MLT1F LTR MaLR 1 542 0 686 162 54 0 chr3 47894101 47894212 -170142946 + FLAM_A SINE Alu 2 118 -15 22 0 0 0 chr3 47894212 47894234 -170142924 + AT_rich Low_complexity Low_complexity 1 22 0 370 284 18 0 chr3 47894665 47894774 -170142384 - MIR SINE MIR -26 236 126 183 361 109 0 chr3 47895644 47895763 -170141395 + MIR SINE MIR 18 149 -59 296 100 0 20 chr3 47895881 47895931 -170141227 + (TTCA)n Simple_repeat Simple_repeat 1 49 0 183 310 211 23 chr3 47895931 47896102 -170141056 - L2 LINE L2 -13 3259 3057 318 276 99 49 chr3 47896526 47896769 -170140389 - L2 LINE L2 -816 2498 2244 315 211 140 38 chr3 47896928 47897038 -170140120 + MIR SINE MIR 30 155 -85 354 303 37 0 chr3 47897117 47897226 -170139932 - MIR SINE MIR -126 136 24 213 365 47 0 chr3 47897236 47897321 -170139837 + MIR SINE MIR 152 240 -22 911 178 0 0 chr3 47898102 47898254 -170138904 - AluJb SINE Alu -17 295 144 1790 140 4 0 chr3 47898254 47898525 -170138633 + AluJo SINE Alu 16 287 -25 313 283 9 0 chr3 47899305 47899411 -170137747 - LTR33A LTR ERVL 0 523 417 2175 103 0 13 chr3 47899714 47900024 -170137134 - AluSq SINE Alu -7 306 1 782 268 41 0 chr3 47901001 47901221 -170135937 + L1ME1 LINE L1 5610 5838 -328 528 221 67 61 chr3 47901246 47901309 -170135849 + L1ME1 LINE L1 5930 5991 -343 2262 200 34 22 chr3 47901309 47901814 -170135344 + MER9 LTR ERVK 1 511 0 528 221 67 61 chr3 47901814 47901989 -170135169 + L1ME1 LINE L1 5991 6334 0 1852 138 3 7 chr3 47902133 47902416 -170134742 + AluSx SINE Alu 1 282 -30 459 0 0 0 chr3 47902420 47902471 -170134687 + (CA)n Simple_repeat Simple_repeat 2 52 0 417 303 6 63 chr3 47902525 47902571 -170134587 + L1ME1 LINE L1 3514 3561 -2585 2485 25 0 0 chr3 47902571 47902856 -170134302 - AluYb8 SINE Alu -5 313 29 417 303 6 63 chr3 47902856 47902984 -170134174 + L1ME1 LINE L1 3561 3678 -2468 3046 147 49 46 chr3 47902990 47903388 -170133770 + L1MB7 LINE L1 5107 5502 -676 2415 55 0 0 chr3 47903388 47903678 -170133480 + AluY SINE Alu 5 294 -17 3046 147 49 46 chr3 47903678 47903866 -170133292 + L1MB7 LINE L1 5502 5688 -490 1560 205 62 52 chr3 47903866 47904252 -170132906 - MLT1B LTR MaLR 0 390 1 3046 147 49 46 chr3 47904252 47904438 -170132720 + L1MB7 LINE L1 5688 5877 -301 1339 195 58 0 chr3 47904494 47904786 -170132372 + L1MB7 LINE L1 5860 6168 -16 2179 101 0 3 chr3 47904793 47905099 -170132059 - AluY SINE Alu -6 305 1 1198 201 70 38 chr3 47905167 47905480 -170131678 - MLT1J1 LTR MaLR -55 391 69 1594 184 172 42 chr3 47905612 47906084 -170131074 - MLT1H LTR MaLR -14 535 3 565 284 50 100 chr3 47906090 47906264 -170130894 + L1ME1 LINE L1 4440 4621 -1525 1989 134 0 3 chr3 47906264 47906563 -170130595 + AluSx SINE Alu 1 298 -14 565 284 50 100 chr3 47906563 47906700 -170130458 + L1ME1 LINE L1 4621 4763 -1383 1906 130 20 0 chr3 47906700 47907001 -170130157 + AluSx SINE Alu 1 307 -5 565 284 50 100 chr3 47907001 47907162 -170129996 + L1ME1 LINE L1 4763 4931 -1215 1872 127 0 0 chr3 47907162 47907429 -170129729 - AluSx SINE Alu -9 303 37 565 284 50 100 chr3 47907429 47907459 -170129699 + L1ME1 LINE L1 4931 4961 -1185 1595 160 10 17 chr3 47907459 47907759 -170129399 + AluJb SINE Alu 1 298 -14 565 284 50 100 chr3 47907759 47907992 -170129166 + L1ME1 LINE L1 4961 5141 -1005 819 108 0 0 chr3 47908035 47908146 -170129012 + AluY SINE Alu 1 111 -200 1640 180 3 7 chr3 47908240 47908540 -170128618 - AluJb SINE Alu -13 299 1 629 235 50 0 chr3 47908540 47908755 -170128403 - L1MC4a LINE L1 -332 5822 5767 793 83 0 0 chr3 47908762 47908871 -170128287 + AluY SINE Alu 202 310 -1 1845 235 62 31 chr3 47908960 47909544 -170127614 + L1ME1 LINE L1 5560 6161 -5 2211 174 60 72 chr3 47909745 47909865 -170127293 + L1M4 LINE L1 2755 2875 -3271 1912 112 0 88 chr3 47909865 47910205 -170126953 - AluSx SINE Alu -2 310 1 2211 174 60 72 chr3 47910205 47910767 -170126391 + L1M4 LINE L1 2875 3429 -2717 1951 169 12 64 chr3 47911007 47911415 -170125743 + MLT1B LTR MaLR 1 387 -3 531 289 104 62 chr3 47911550 47912240 -170124918 + L2 LINE L2 2593 3313 0 278 333 0 0 chr3 47913009 47913084 -170124074 - MIR3 SINE MIR -52 156 82 1905 117 13 7 chr3 47913369 47913667 -170123491 - AluJo SINE Alu -10 302 3 21 0 0 0 chr3 47914029 47914050 -170123108 + GC_rich Low_complexity Low_complexity 1 21 0 184 259 148 25 chr3 47914822 47914903 -170122255 - L2 LINE L2 -22 3291 3201 205 200 91 18 chr3 47915248 47915303 -170121855 - MIR SINE MIR -72 190 132 2020 101 10 13 chr3 47915385 47915547 -170121611 - AluSq SINE Alu -16 297 135 2180 98 3 0 chr3 47915547 47915843 -170121315 - AluSp SINE Alu -16 297 1 2020 101 10 13 chr3 47915843 47915978 -170121180 - AluSq SINE Alu -178 135 1 571 181 156 25 chr3 47915979 47916139 -170121019 - L1ME3 LINE L1 -61 6101 5921 288 191 16 32 chr3 47916140 47916203 -170120955 - MIR SINE MIR -110 152 91 4760 102 10 47 chr3 47916203 47916921 -170120237 + LTR8 LTR ERV1 1 691 0 776 112 40 0 chr3 47916921 47917045 -170120113 + LTR54 LTR ERV1 382 510 0 736 154 0 0 chr3 47917190 47917294 -170119864 - MER30B DNA MER1_type 0 230 127 4175 25 21 0 chr3 47917294 47917780 -170119378 - L1PA3 LINE L1 -1904 4242 3747 9745 29 0 0 chr3 47917780 47919705 -170117453 + L1PA3 LINE L1 4243 6168 0 499 81 267 0 chr3 47919723 47919809 -170117349 - MER30B DNA MER1_type -81 109 1 1570 177 28 72 chr3 47919943 47920332 -170116826 - MLT1A2 LTR MaLR -2 372 1 2502 192 56 40 chr3 47920398 47920972 -170116186 + MER119 DNA MER1_type 1 583 0 512 323 50 37 chr3 47921012 47921739 -170115419 - L1ME3 LINE L1 -386 5784 5043 2106 131 0 3 chr3 47922292 47922605 -170114553 - AluSx SINE Alu 0 312 1 829 181 0 0 chr3 47922713 47922846 -170114312 + FLAM_C SINE Alu 1 133 0 883 161 19 25 chr3 47923454 47923615 -170113543 - L1PB4 LINE L1 0 6156 5997 597 287 133 31 chr3 47923809 47924029 -170113129 + L1M4 LINE L1 2816 3012 -3134 1878 199 37 26 chr3 47924029 47924207 -170112951 + MLT1C LTR MaLR 1 176 -291 2117 96 23 3 chr3 47924207 47924509 -170112649 + AluSp SINE Alu 1 308 -5 1878 199 37 26 chr3 47924509 47924792 -170112366 + MLT1C LTR MaLR 176 467 0 597 287 133 31 chr3 47924792 47924828 -170112330 + L1M4 LINE L1 3012 3043 -3103 1623 178 45 0 chr3 47924828 47925107 -170112051 + AluJo SINE Alu 1 295 -17 894 128 0 0 chr3 47925107 47925256 -170111902 + (GGA)n Simple_repeat Simple_repeat 2 150 0 1623 178 45 0 chr3 47925256 47925268 -170111890 + AluJo SINE Alu 295 305 -7 597 287 133 31 chr3 47925268 47925424 -170111734 + L1M4 LINE L1 3043 3271 -2875 309 226 59 29 chr3 47926371 47926473 -170110685 - L2 LINE L2 0 3272 3168 230 325 160 10 chr3 47926641 47926847 -170110311 - L2 LINE L2 -607 2707 2471 541 291 119 44 chr3 47927252 47927747 -170109411 - L1ME3 LINE L1 -1847 4299 3768 1879 98 36 4 chr3 47927793 47928089 -170109069 - AluSx SINE Alu 0 305 1 2111 102 0 0 chr3 47928095 47928419 -170108739 - AluSx SINE Alu 0 324 1 295 156 0 0 chr3 47928419 47928464 -170108694 - AluSg/x SINE Alu -172 128 84 502 279 39 74 chr3 47928464 47928693 -170108465 - L1ME3 LINE L1 -2352 3794 3574 817 136 53 0 chr3 47928727 47928859 -170108299 - FRAM SINE Alu -12 164 26 988 193 6 6 chr3 47929180 47929346 -170107812 - FRAM SINE Alu 0 166 1 435 278 69 35 chr3 47929421 47929697 -170107461 - L1MC/D LINE L1 -379 5742 5475 1434 173 43 27 chr3 47929713 47930013 -170107145 + AluJb SINE Alu 1 305 -7 3156 161 14 5 chr3 47930014 47930597 -170106561 - L1MB8 LINE L1 -5 6173 5586 843 277 56 23 chr3 47930600 47931084 -170106074 - L1MC/D LINE L1 -2841 3305 2806 440 161 140 0 chr3 47931087 47931180 -170105978 - MER5A DNA MER1_type -7 182 77 1016 155 61 0 chr3 47931182 47931363 -170105795 - MER3 DNA MER1_type -10 199 8 204 244 217 9 chr3 47931750 47931865 -170105293 + L2 LINE L2 3170 3308 -5 257 235 174 10 chr3 47932399 47932497 -170104661 - L2 LINE L2 -212 3060 2947 598 178 44 44 chr3 47932650 47932785 -170104373 + LTR8 LTR ERV1 1 135 -556 1125 114 12 0 chr3 47932785 47932952 -170104206 - AluYa5 SINE Alu -7 304 136 1717 154 48 170 chr3 47932956 47933619 -170103539 + LTR8A LTR ERV1 146 727 0 322 241 38 89 chr3 47933759 47933917 -170103241 - LTR58 LTR ERV1 -230 449 197 2409 156 52 0 chr3 47934872 47935277 -170101881 - MSTC LTR MaLR 0 428 3 624 290 25 33 chr3 47936048 47936324 -170100834 + L1ME3A LINE L1 3917 4190 -1956 1109 253 58 51 chr3 47936330 47937194 -170099964 + L1ME3A LINE L1 4281 5313 -849 1879 141 0 21 chr3 47937194 47937507 -170099651 + AluSx SINE Alu 1 307 0 1109 253 58 51 chr3 47937507 47938017 -170099141 + L1ME3A LINE L1 5313 5818 -344 1040 164 27 109 chr3 47938021 47938154 -170099004 + AluJo SINE Alu 2 106 -206 1838 136 18 0 chr3 47938154 47938434 -170098724 - AluSx SINE Alu -27 285 1 1040 164 27 109 chr3 47938434 47938556 -170098602 + AluJo SINE Alu 106 236 -76 650 161 165 32 chr3 47938556 47938774 -170098384 + L1ME3A LINE L1 5849 6095 -75 853 161 7 7 chr3 47938798 47938953 -170098205 + FRAM SINE Alu 12 166 -10 22 0 0 0 chr3 47939076 47939098 -170098060 + AT_rich Low_complexity Low_complexity 1 22 0 477 331 122 26 chr3 47939104 47939530 -170097628 - L1MEd LINE L1 -5116 1003 537 927 175 52 116 chr3 47940113 47940184 -170096974 - MER33 DNA MER1_type -2284 301 227 3032 73 0 0 chr3 47940184 47940569 -170096589 + L1PA8 LINE L1 5784 6168 -4 927 175 52 116 chr3 47940569 47940749 -170096409 - MER33 DNA MER1_type -2358 227 37 234 0 0 0 chr3 47940749 47940775 -170096383 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1724 96 4 12 chr3 47940777 47941026 -170096132 - AluSx SINE Alu -26 286 40 927 175 52 116 chr3 47941026 47941098 -170096060 - MER33 DNA MER1_type -2549 36 1 296 267 89 11 chr3 47943114 47943204 -170093954 - MIR SINE MIR -8 254 158 678 246 42 18 chr3 47943209 47943376 -170093782 + MIR SINE MIR 92 262 0 304 298 39 10 chr3 47943382 47943486 -170093672 - MIR SINE MIR -107 155 49 303 360 52 58 chr3 47943473 47943781 -170093377 + L2 LINE L2 2930 3235 -37 * 524 289 90 15 chr3 47945077 47945281 -170091877 + MIR SINE MIR 23 241 -21 204 179 0 0 chr3 47947378 47947417 -170089741 + (CA)n Simple_repeat Simple_repeat 1 39 0 288 289 133 7 chr3 47948731 47948866 -170088292 - MIR SINE MIR -30 232 81 3100 197 22 20 chr3 47949267 47949851 -170087307 + MLT-int LTR MaLR 218 802 -933 1858 156 0 0 chr3 47950709 47950998 -170086160 - AluJo SINE Alu -23 289 1 488 248 91 66 chr3 47951037 47951235 -170085923 + MIR SINE MIR 5 207 -55 545 249 44 39 chr3 47952627 47952808 -170084350 + MIR SINE MIR 46 227 -35 238 179 18 18 chr3 47952818 47952874 -170084284 + CT-rich Low_complexity Low_complexity 3 58 0 260 311 59 8 chr3 47954290 47954409 -170082749 + MIR SINE MIR 23 147 -61 227 229 0 86 chr3 47955773 47955878 -170081280 + L1MCc LINE L1 1381 1476 -4947 398 306 167 25 chr3 47955881 47956162 -170080996 + L1MCc LINE L1 1660 1980 -4951 362 286 47 71 chr3 47956164 47956367 -170080791 + L1MCc LINE L1 2041 2265 -1037 1570 126 4 16 chr3 47956367 47956613 -170080545 + AluJb SINE Alu 50 292 -20 362 286 47 71 chr3 47956613 47956792 -170080366 + L1MCc LINE L1 2265 2447 -855 2393 60 0 10 chr3 47956804 47957103 -170080055 - AluY SINE Alu -15 296 1 821 95 0 0 chr3 47957130 47957235 -170079923 + U6 snRNA snRNA 1 105 -2 342 181 72 36 chr3 47957362 47957445 -170079713 - L1M4 LINE L1 -1548 4598 4513 1089 271 54 21 chr3 47957480 47958130 -170079028 + L1MC4a LINE L1 3641 4311 -2630 265 306 27 20 chr3 47958192 47958339 -170078819 + L1MC4a LINE L1 4447 4594 -2347 1367 190 4 4 chr3 47958343 47958590 -170078568 - AluJb SINE Alu -20 292 46 618 109 0 0 chr3 47958662 47958763 -170078395 + (TA)n Simple_repeat Simple_repeat 1 101 0 2118 94 0 14 chr3 47958764 47959061 -170078097 - AluSx SINE Alu -19 293 1 22 35 0 0 chr3 47959064 47959093 -170078065 + AT_rich Low_complexity Low_complexity 1 29 0 712 246 191 36 chr3 47959093 47959560 -170077598 + L1MC4a LINE L1 4648 5186 -1755 875 181 137 6 chr3 47959562 47959744 -170077414 + L1MC4a LINE L1 6178 6383 -2220 285 239 30 0 chr3 47959800 47959867 -170077291 + MER68 LTR ERV1 44 112 -450 1081 188 0 42 chr3 47959891 47960131 -170077027 + AluJo SINE Alu 1 230 -82 1112 261 24 90 chr3 47960219 47960561 -170076597 + MER68 LTR ERV1 169 479 -83 1982 134 0 3 chr3 47960561 47960853 -170076305 - AluSx SINE Alu -21 291 1 1112 261 24 90 chr3 47960853 47960932 -170076226 + MER68 LTR ERV1 479 562 0 8361 170 58 47 chr3 47960937 47961155 -170076003 + L1MC4a LINE L1 6387 6601 -2002 1484 188 11 7 chr3 47961155 47961442 -170075716 + AluJo SINE Alu 6 293 -19 8361 170 58 47 chr3 47961442 47962159 -170074999 + L1MC4a LINE L1 6601 7308 -1295 1846 103 37 4 chr3 47962159 47962431 -170074727 + AluSx SINE Alu 1 281 -31 225 0 0 0 chr3 47962434 47962459 -170074699 + (CA)n Simple_repeat Simple_repeat 2 26 0 8361 170 58 47 chr3 47962459 47962527 -170074631 + L1MC4a LINE L1 7309 7375 -1228 491 0 0 17 chr3 47962527 47962587 -170074571 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 8361 170 58 47 chr3 47962587 47963391 -170073767 + L1MC4a LINE L1 7375 8226 -377 1294 74 6 11 chr3 47963391 47963566 -170073592 + L1PA11 LINE L1 6001 6174 0 8361 170 58 47 chr3 47963566 47963688 -170073470 + L1MC4a LINE L1 8226 8345 -258 6191 84 1 3 chr3 47963689 47964470 -170072688 + LTR17 LTR ERV1 1 780 0 34721 50 2 7 chr3 47964470 47970527 -170066631 + HERV17 LTR ERV1 1 6019 -2607 267 57 0 0 chr3 47970520 47970555 -170066603 + HERV17 LTR ERV1 7510 7544 -1082 * 2406 68 0 0 chr3 47970549 47970841 -170066317 + HERV17 LTR ERV1 8335 8626 0 5921 76 30 4 chr3 47970841 47971601 -170065557 + LTR17 LTR ERV1 1 780 0 883 213 75 48 chr3 47971601 47971813 -170065345 + L1MD3 LINE L1 7721 7943 -52 1742 192 7 0 chr3 47971813 47972121 -170065037 - AluJo SINE Alu -2 310 1 883 213 75 48 chr3 47972121 47972176 -170064982 + L1MD3 LINE L1 7943 7995 0 4084 150 45 14 chr3 47972324 47973098 -170064060 + L1MB3 LINE L1 5386 6183 0 531 242 167 40 chr3 47973101 47973473 -170063685 + L1M4 LINE L1 4425 4843 -1303 22 0 0 0 chr3 47973701 47973723 -170063435 + AT_rich Low_complexity Low_complexity 1 22 0 1675 250 85 30 chr3 47973853 47973894 -170063264 + L1ME3A LINE L1 5191 5228 -938 222 37 0 0 chr3 47973894 47973921 -170063237 + (CA)n Simple_repeat Simple_repeat 1 27 0 1675 250 85 30 chr3 47973921 47973983 -170063175 + L1ME3A LINE L1 5228 5285 -881 2115 129 0 16 chr3 47973983 47974294 -170062864 + AluSx SINE Alu 1 306 -6 1675 250 85 30 chr3 47974294 47974308 -170062850 + L1ME3A LINE L1 5285 5297 -869 2301 92 20 3 chr3 47974308 47974614 -170062544 + AluSx SINE Alu 1 311 -1 1675 250 85 30 chr3 47974614 47974766 -170062392 + L1ME3A LINE L1 5297 5439 -727 2206 92 10 33 chr3 47974766 47975069 -170062089 - AluSp SINE Alu -17 296 1 1675 250 85 30 chr3 47975069 47975515 -170061643 + L1ME3A LINE L1 5439 5955 -211 408 259 155 65 chr3 47976924 47977156 -170060002 + Charlie8 DNA MER1_type 2 254 -2163 997 174 0 0 chr3 47977193 47977342 -170059816 - AluSg/x SINE Alu -29 283 135 988 195 29 65 chr3 47978924 47979232 -170057926 + AluSx SINE Alu 2 298 -4 288 308 72 32 chr3 47979249 47979470 -170057688 + L1M4 LINE L1 4912 5141 -1005 883 93 0 0 chr3 47979513 47979621 -170057537 + AluY SINE Alu 1 108 -203 1475 207 7 10 chr3 47979717 47980017 -170057141 - AluJb SINE Alu -13 299 1 299 315 6 11 chr3 47980137 47980315 -170056843 + GA-rich Low_complexity Low_complexity 3 179 0 * 433 231 7 20 chr3 47980282 47980429 -170056729 + G-rich Low_complexity Low_complexity 1 145 0 * 702 201 11 6 chr3 47980410 47980589 -170056569 + GA-rich Low_complexity Low_complexity 1 180 0 186 71 0 0 chr3 47980730 47980758 -170056400 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 266 226 59 29 chr3 47981704 47981806 -170055352 - L2 LINE L2 0 3272 3168 554 291 123 48 chr3 47982585 47983080 -170054078 - L1M4 LINE L1 -1847 4299 3768 2000 98 36 4 chr3 47983126 47983422 -170053736 - AluSx SINE Alu 0 305 1 2241 102 0 0 chr3 47983428 47983749 -170053409 - AluSx SINE Alu 0 321 1 296 156 0 0 chr3 47983749 47983794 -170053364 - AluSq/x SINE Alu -172 130 86 231 246 57 85 chr3 47983812 47984023 -170053135 - L1M4 LINE L1 -2368 3778 3574 862 137 53 0 chr3 47984057 47984188 -170052970 - FRAM SINE Alu -13 163 26 983 193 6 6 chr3 47984509 47984675 -170052483 - FRAM SINE Alu 0 166 1 446 278 69 35 chr3 47984750 47985026 -170052132 - L1MC/D LINE L1 -379 5742 5475 1542 173 43 27 chr3 47985042 47985342 -170051816 + AluJb SINE Alu 1 305 -7 3201 161 14 5 chr3 47985343 47985926 -170051232 - L1MB8 LINE L1 -5 6173 5586 874 269 60 27 chr3 47985929 47986413 -170050745 - L1MC/D LINE L1 -2841 3305 2806 398 161 140 0 chr3 47986416 47986509 -170050649 - MER5A DNA MER1_type -7 182 77 1028 155 61 0 chr3 47986511 47986692 -170050466 - MER3 DNA MER1_type -10 199 8 230 146 0 0 chr3 47987728 47987769 -170049389 - L2 LINE L2 -212 3060 3020 599 178 44 44 chr3 47987979 47988114 -170049044 + LTR8 LTR ERV1 1 135 -556 1192 114 12 0 chr3 47988114 47988281 -170048877 - AluYa5 SINE Alu -7 304 136 1701 154 48 170 chr3 47988285 47988948 -170048210 + LTR8A LTR ERV1 146 727 0 320 260 0 39 chr3 47989142 47989246 -170047912 - LTR58 LTR ERV1 -230 449 350 2430 153 52 0 chr3 47990135 47990540 -170046618 - MSTC LTR MaLR 0 428 3 634 275 36 43 chr3 47991311 47991587 -170045571 + L1ME LINE L1 3917 4190 -1956 1120 253 58 51 chr3 47991593 47992457 -170044701 + L1ME LINE L1 4281 5313 -849 2003 142 0 17 chr3 47992457 47992769 -170044389 + AluSx SINE Alu 1 307 0 1120 253 58 51 chr3 47992769 47993279 -170043879 + L1ME LINE L1 5313 5818 -344 672 198 56 0 chr3 47993283 47993409 -170043749 + FLAM_A SINE Alu 1 133 0 1964 91 12 4 chr3 47993414 47993668 -170043490 - AluY SINE Alu -27 284 29 3081 147 49 46 chr3 47993802 47994200 -170042958 + L1MB7 LINE L1 5107 5502 -676 2549 55 0 0 chr3 47994200 47994490 -170042668 + AluY SINE Alu 5 294 -17 3081 147 49 46 chr3 47994490 47994678 -170042480 + L1MB7 LINE L1 5502 5688 -490 1564 205 62 52 chr3 47994678 47995064 -170042094 - MLT1B LTR MaLR 0 390 1 3081 147 49 46 chr3 47995064 47995250 -170041908 + L1MB7 LINE L1 5688 5877 -301 1353 195 58 0 chr3 47995306 47995598 -170041560 + L1MB7 LINE L1 5860 6168 -16 2288 105 0 3 chr3 47995605 47995911 -170041247 - AluY SINE Alu -6 305 1 1189 201 70 38 chr3 47995979 47996292 -170040866 - MLT1J1 LTR MaLR -55 391 69 1576 184 172 42 chr3 47996424 47996896 -170040262 - MLT1H LTR MaLR -14 535 3 505 276 24 83 chr3 47996902 47997076 -170040082 + L1ME1 LINE L1 4440 4623 -1523 2113 134 0 3 chr3 47997076 47997375 -170039783 + AluSx SINE Alu 1 298 -14 505 276 24 83 chr3 47997375 47997512 -170039646 + L1ME1 LINE L1 4623 4728 -1418 2170 106 20 0 chr3 47997512 47997805 -170039353 + AluSx SINE Alu 1 299 -13 505 276 24 83 chr3 47997805 47997865 -170039293 + L1ME1 LINE L1 4728 4790 -1356 1981 127 0 0 chr3 47997977 47998244 -170038914 - AluSx SINE Alu -9 303 37 1802 148 10 22 chr3 47998274 47998585 -170038573 + AluJb SINE Alu 1 307 -5 294 309 73 27 chr3 47998591 47998811 -170038347 + L1ME1 LINE L1 4912 5141 -1005 868 108 0 0 chr3 47998854 47998965 -170038193 + AluY SINE Alu 1 111 -200 1800 179 0 7 chr3 47999059 47999360 -170037798 - AluJb SINE Alu -13 299 1 639 235 50 0 chr3 47999360 47999575 -170037583 - L1MC4a LINE L1 -332 5822 5767 836 73 0 0 chr3 47999582 47999691 -170037467 + AluY SINE Alu 202 310 -1 1909 231 60 31 chr3 47999780 48000365 -170036793 + L1ME1 LINE L1 5560 6161 -5 2256 174 60 72 chr3 48000566 48000686 -170036472 + L1M4 LINE L1 2755 2875 -3271 2048 111 0 88 chr3 48000686 48001027 -170036131 - AluSx SINE Alu -1 311 1 2256 174 60 72 chr3 48001027 48001589 -170035569 + L1M4 LINE L1 2875 3429 -2717 1947 169 12 64 chr3 48001829 48002237 -170034921 + MLT1B LTR MaLR 1 387 -3 405 290 102 60 chr3 48002372 48003062 -170034096 + L2 LINE L2 2593 3313 0 245 333 0 0 chr3 48003830 48003905 -170033253 - MIR3 SINE MIR -52 156 82 1997 114 13 10 chr3 48004190 48004489 -170032669 - AluJo SINE Alu -10 302 3 26 64 0 0 chr3 48004789 48004836 -170032322 + GC_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr3 48004850 48004872 -170032286 + GC_rich Low_complexity Low_complexity 1 22 0 235 196 59 0 chr3 48006070 48006121 -170031037 - MIR SINE MIR -72 190 137 2143 97 10 13 chr3 48006209 48006371 -170030787 - AluSq SINE Alu -16 297 135 2311 98 3 0 chr3 48006371 48006667 -170030491 - AluSp SINE Alu -16 297 1 2143 97 10 13 chr3 48006667 48006802 -170030356 - AluSq SINE Alu -178 135 1 564 188 156 25 chr3 48006803 48006963 -170030195 - L1ME3 LINE L1 -61 6101 5921 259 191 16 32 chr3 48006964 48007027 -170030131 - MIR SINE MIR -110 152 91 4733 102 10 49 chr3 48007027 48007746 -170029412 + LTR8 LTR ERV1 1 691 0 778 107 41 0 chr3 48007748 48007870 -170029288 + LTR54 LTR ERV1 384 510 0 736 154 0 0 chr3 48008015 48008119 -170029039 - MER30B DNA MER1_type 0 230 127 4226 25 19 0 chr3 48008119 48008606 -170028552 - L1PA3 LINE L1 -1904 4242 3747 9802 31 0 0 chr3 48008606 48010547 -170026611 + L1PA3 LINE L1 4243 6183 0 500 81 267 0 chr3 48010565 48010651 -170026507 - MER30B DNA MER1_type -81 109 1 1617 175 28 72 chr3 48010785 48011174 -170025984 - MLT1A2 LTR MaLR -2 372 1 2510 192 56 40 chr3 48011240 48011814 -170025344 + MER119 DNA MER1_type 1 583 0 515 324 50 35 chr3 48011854 48012580 -170024578 - L1ME3 LINE L1 -386 5784 5043 2230 131 0 3 chr3 48013133 48013446 -170023712 - AluSx SINE Alu 0 312 1 827 181 0 0 chr3 48013554 48013687 -170023471 + FLAM_C SINE Alu 1 133 0 887 161 19 25 chr3 48014295 48014456 -170022702 - L1PB4 LINE L1 0 6156 5997 352 295 137 27 chr3 48014650 48014870 -170022288 + L1M4 LINE L1 2816 3011 -3135 1873 199 37 26 chr3 48014870 48015048 -170022110 + MLT1C LTR MaLR 1 176 -291 2377 83 20 0 chr3 48015048 48015350 -170021808 + AluSp SINE Alu 1 308 -5 1873 199 37 26 chr3 48015350 48015633 -170021525 + MLT1C LTR MaLR 176 467 0 352 295 137 27 chr3 48015633 48015669 -170021489 + L1M4 LINE L1 3011 3042 -3104 1761 175 45 0 chr3 48015669 48015948 -170021210 + AluJo SINE Alu 1 295 -17 960 114 0 0 chr3 48015948 48016097 -170021061 + (GGA)n Simple_repeat Simple_repeat 2 150 0 1761 175 45 0 chr3 48016097 48016109 -170021049 + AluJo SINE Alu 295 305 -7 352 295 137 27 chr3 48016109 48016254 -170020904 + L1M4 LINE L1 3042 3262 -2884 266 226 59 29 chr3 48017212 48017314 -170019844 - L2 LINE L2 0 3272 3168 554 291 123 48 chr3 48018093 48018588 -170018570 - L1ME3 LINE L1 -1847 4299 3768 199 0 0 0 chr3 48018634 48018656 -170018502 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2000 98 36 4 chr3 48018656 48018930 -170018228 - AluSx SINE Alu -1 304 1 343 0 0 0 chr3 48018936 48018974 -170018184 + (TTG)n Simple_repeat Simple_repeat 2 180 0 2241 102 0 0 chr3 48018974 48019257 -170017901 - AluSx SINE Alu -1 320 1 296 156 0 0 chr3 48019257 48019302 -170017856 - AluSq/x SINE Alu -172 130 86 502 279 39 74 chr3 48019302 48019531 -170017627 - L1ME3 LINE L1 -2352 3794 3574 811 137 53 0 chr3 48019565 48019696 -170017462 - FRAM SINE Alu -13 163 26 956 205 6 6 chr3 48020017 48020183 -170016975 - FRAM SINE Alu 0 166 1 449 284 60 32 chr3 48020258 48020535 -170016623 - L1MC/D LINE L1 -379 5742 5475 1434 173 43 27 chr3 48020551 48020851 -170016307 + AluJb SINE Alu 1 305 -7 3156 161 14 5 chr3 48020852 48021435 -170015723 - L1MB8 LINE L1 -5 6173 5586 843 277 56 23 chr3 48021438 48021922 -170015236 - L1MC/D LINE L1 -2841 3305 2806 440 161 140 0 chr3 48021925 48022018 -170015140 - MER5A DNA MER1_type -7 182 77 1016 155 61 0 chr3 48022020 48022201 -170014957 - MER3 DNA MER1_type -10 199 8 204 244 217 9 chr3 48022588 48022703 -170014455 + L2 LINE L2 3170 3308 -5 257 235 174 10 chr3 48023237 48023335 -170013823 - L2 LINE L2 -212 3060 2947 598 178 44 44 chr3 48023488 48023623 -170013535 + LTR8 LTR ERV1 1 135 -556 1125 114 12 0 chr3 48023623 48023790 -170013368 - AluYa5 SINE Alu -7 304 136 1696 155 48 170 chr3 48023794 48024457 -170012701 + LTR8A LTR ERV1 146 727 0 322 241 38 89 chr3 48024597 48024755 -170012403 - LTR58 LTR ERV1 -230 449 197 2424 153 52 0 chr3 48025644 48026049 -170011109 - MSTC LTR MaLR 0 428 3 624 290 25 33 chr3 48026820 48027096 -170010062 + L1ME LINE L1 3917 4190 -1956 1109 255 56 51 chr3 48027102 48027967 -170009191 + L1ME LINE L1 4281 5310 -852 1885 142 0 17 chr3 48027967 48028279 -170008879 + AluSx SINE Alu 1 307 0 1109 255 56 51 chr3 48028279 48028791 -170008367 + L1ME LINE L1 5310 5818 -344 675 198 56 0 chr3 48028795 48028921 -170008237 + FLAM_A SINE Alu 1 133 0 1737 143 7 0 chr3 48028926 48029198 -170007960 - AluSx SINE Alu -27 285 12 195 226 24 95 chr3 48130964 48131048 -169906110 + MIR3 SINE MIR 109 186 -22 567 107 0 0 chr3 48131444 48131528 -169905630 + (GAAA)n Simple_repeat Simple_repeat 3 86 0 192 40 0 0 chr3 48131530 48131555 -169905603 + (GGAA)n Simple_repeat Simple_repeat 3 27 0 2417 94 3 0 chr3 48131592 48131901 -169905257 - AluSp SINE Alu -3 310 1 24 67 0 0 chr3 48131946 48131991 -169905167 + AT_rich Low_complexity Low_complexity 1 45 0 264 284 172 0 chr3 48132087 48132155 -169905003 - MIR3 SINE MIR -36 172 117 5272 128 23 22 chr3 48132155 48132937 -169904221 + LTR39 LTR ERV1 1 783 0 264 284 172 0 chr3 48132937 48132984 -169904174 - MIR3 SINE MIR -91 117 37 1548 282 86 18 chr3 48133085 48133645 -169903513 + ERVL LTR ERVL 4364 4961 -803 719 276 26 62 chr3 48133636 48133976 -169903182 + ERVL LTR ERVL 5069 5396 -368 * 559 298 68 16 chr3 48134343 48134562 -169902596 + LTR33A LTR ERVL 37 244 -279 1183 123 37 0 chr3 48135138 48135300 -169901858 + AluSx SINE Alu 1 168 -144 251 227 0 0 chr3 48135432 48135476 -169901682 - LTR16A1 LTR ERVL -2 455 412 242 79 26 0 chr3 48135497 48135535 -169901623 - MLT1J LTR MaLR -51 460 422 2121 105 0 0 chr3 48135613 48135890 -169901268 - AluSx SINE Alu -24 288 12 1067 236 21 52 chr3 48135895 48136222 -169900936 - LTR16A1 LTR ERVL -54 403 87 840 240 16 55 chr3 48136283 48136445 -169900713 - L1MEc LINE L1 -4603 2004 1853 2087 123 3 3 chr3 48136445 48136767 -169900391 - AluSx SINE Alu 0 322 1 840 240 16 55 chr3 48136767 48136857 -169900301 - L1MEc LINE L1 -4754 1853 1761 1688 208 8 38 chr3 48136863 48137229 -169899929 + MLT1A1 LTR MaLR 11 365 0 723 230 160 13 chr3 48137229 48137542 -169899616 - L1MEc LINE L1 -4852 1574 1216 * 2805 256 93 23 chr3 48137539 48138401 -169898757 - L1MEc LINE L1 -5333 1274 474 2279 85 0 0 chr3 48138401 48138708 -169898450 + AluY SINE Alu 1 307 0 4605 131 39 29 chr3 48138716 48139436 -169897722 + LTR8A LTR ERV1 1 727 0 2805 256 93 23 chr3 48139436 48139524 -169897634 - L1MEc LINE L1 -6139 468 247 802 301 55 4 chr3 48139845 48140081 -169897077 + MIR SINE MIR 10 257 -5 652 344 21 18 chr3 48140330 48140612 -169896546 + LTR16C LTR ERVL 147 429 -62 187 345 0 0 chr3 48140696 48140754 -169896404 + MER5B DNA MER1_type 1 58 -120 1212 141 136 93 chr3 48140762 48140910 -169896248 - MER92B LTR ERV1 -1 635 495 1811 192 24 27 chr3 48140910 48141280 -169895878 - MER93b LTR ERV1 -4 369 1 1212 141 136 93 chr3 48141280 48141507 -169895651 - MER92B LTR ERV1 -141 495 244 643 190 7 49 chr3 48141504 48141646 -169895512 - MER92B LTR ERV1 -499 137 2 * 4569 127 70 7 chr3 48141685 48142361 -169894797 + MER72 LTR ERV1 5 722 0 670 149 24 106 chr3 48142375 48142465 -169894693 + L1MC5 LINE L1 7499 7564 -397 1955 147 16 7 chr3 48142465 48142771 -169894387 + AluJb SINE Alu 2 310 -2 670 149 24 106 chr3 48142771 48142888 -169894270 + L1MC5 LINE L1 7564 7689 -272 * 830 197 62 59 chr3 48142871 48143161 -169893997 + L1MC5 LINE L1 7635 7925 -36 2438 87 0 0 chr3 48143508 48143807 -169893351 - AluSx SINE Alu -13 299 1 3788 121 63 34 chr3 48143897 48144308 -169892850 - MER39 LTR ERV1 0 707 268 4249 105 86 2 chr3 48144308 48144910 -169892248 + MER39B LTR ERV1 1 653 0 3788 121 63 34 chr3 48144910 48145153 -169892005 - MER39 LTR ERV1 -439 268 34 * 4040 121 10 8 chr3 48145151 48145757 -169891401 - MER41B LTR ERV1 -28 607 1 850 112 0 0 chr3 48145850 48145957 -169891201 + U6 snRNA snRNA 1 107 0 23 33 0 0 chr3 48145972 48146002 -169891156 + AT_rich Low_complexity Low_complexity 1 30 0 272 203 34 0 chr3 48146027 48146086 -169891072 - Charlie2 DNA MER1_type -845 2017 1957 292 247 0 0 chr3 48146144 48146217 -169890941 + L1ME3A LINE L1 6083 6155 -15 1405 195 92 45 chr3 48146388 48146828 -169890330 - MER31B LTR ERV1 0 661 7 331 185 210 0 chr3 48147171 48147252 -169889906 - Charlie2 DNA MER1_type -909 1953 1856 427 255 105 69 chr3 48147288 48147535 -169889623 - Charlie2 DNA MER1_type -2511 271 16 1834 214 54 36 chr3 48148396 48148841 -169888317 - MSTB2 LTR MaLR 0 457 5 782 298 37 24 chr3 48149019 48149378 -169887780 - L1MC/D LINE L1 -743 5403 5215 23 0 0 0 chr3 48150453 48150476 -169886682 + AT_rich Low_complexity Low_complexity 1 23 0 1990 152 0 13 chr3 48151103 48151455 -169885703 + AluSx SINE Alu 1 312 0 25 31 0 0 chr3 48152176 48152208 -169884950 + AT_rich Low_complexity Low_complexity 1 32 0 442 267 85 36 chr3 48152589 48152733 -169884425 - MIR SINE MIR 0 262 108 2157 131 0 3 chr3 48152733 48153046 -169884112 + AluSx SINE Alu 1 312 0 442 267 85 36 chr3 48153046 48153066 -169884092 - MIR SINE MIR -154 108 90 232 295 123 41 chr3 48153320 48153442 -169883716 - MIR SINE MIR -80 182 51 640 128 50 2 chr3 48153563 48153746 -169883412 - MER2 DNA MER2_type 0 345 128 2267 113 3 0 chr3 48153750 48154052 -169883106 + AluSg SINE Alu 5 307 -3 8983 139 28 13 chr3 48154064 48155406 -169881752 + L1MA3 LINE L1 3738 5059 -1246 1648 161 0 57 chr3 48155406 48155511 -169881647 - 7SLRNA srpRNA srpRNA 0 320 211 2454 69 0 0 chr3 48155511 48155801 -169881357 - AluY SINE Alu -20 291 2 1648 161 0 57 chr3 48155801 48155994 -169881164 - 7SLRNA srpRNA srpRNA -109 211 39 8983 139 28 13 chr3 48155994 48156005 -169881153 + L1MA3 LINE L1 5059 5068 -1237 2097 139 0 3 chr3 48156005 48156308 -169880850 - AluSx SINE Alu -10 302 1 8983 139 28 13 chr3 48156308 48157500 -169879658 + L1MA3 LINE L1 5068 6305 0 855 162 7 0 chr3 48157509 48157645 -169879513 - MER2 DNA MER2_type -208 137 1 939 140 12 30 chr3 48157981 48158145 -169879013 - MLT1F1 LTR MaLR 0 567 407 202 194 0 0 chr3 48158943 48158979 -169878179 + CT-rich Low_complexity Low_complexity 3 38 0 477 242 30 42 chr3 48159001 48159166 -169877992 - ERVL LTR ERVL -779 4985 4823 758 253 86 85 chr3 48159249 48159843 -169877315 + L1MA5 LINE L1 370 1267 -5942 6357 178 36 55 chr3 48159985 48160123 -169877035 + L1MA5 LINE L1 1732 1871 -5337 239 139 0 0 chr3 48160123 48160159 -169876999 + U2 snRNA snRNA 1 36 -152 6357 178 36 55 chr3 48160159 48160659 -169876499 + L1MA5 LINE L1 1871 2379 -4829 2442 71 0 13 chr3 48160659 48160967 -169876191 + AluY SINE Alu 1 304 -7 6357 178 36 55 chr3 48160967 48161850 -169875308 + L1MA5 LINE L1 2379 3263 -3945 1975 142 3 0 chr3 48161850 48162139 -169875019 + AluSx SINE Alu 1 290 -22 6357 178 36 55 chr3 48162139 48162238 -169874920 + L1MA5 LINE L1 3263 3362 -3846 7026 111 9 59 chr3 48162238 48162543 -169874615 + L1MA2 LINE L1 5029 5348 -956 2264 96 3 7 chr3 48162543 48162845 -169874313 + AluSp SINE Alu 11 311 -2 7026 111 9 59 chr3 48162845 48163861 -169873297 + L1MA2 LINE L1 5348 6303 -1 12687 152 46 73 chr3 48163893 48165837 -169871321 + L1MA5 LINE L1 3362 5356 -2006 2043 138 0 0 chr3 48165837 48166128 -169871030 + AluSx SINE Alu 1 291 -21 12687 152 46 73 chr3 48166128 48166591 -169870567 + L1MA5 LINE L1 5356 5830 -1532 1805 170 3 3 chr3 48166591 48166874 -169870284 - AluJb SINE Alu -23 289 7 12687 152 46 73 chr3 48166874 48166985 -169870173 + L1MA5 LINE L1 5830 5942 -1420 292 297 36 14 chr3 48166985 48167123 -169870035 - AluJb SINE Alu -155 147 7 12687 152 46 73 chr3 48167123 48167135 -169870023 + L1MA5 LINE L1 5942 5953 -1409 304 23 0 47 chr3 48167135 48167178 -169869980 + (CCCCCA)n Simple_repeat Simple_repeat 2 42 0 1055 158 49 6 chr3 48167178 48167342 -169869816 - FAM SINE Alu -4 171 1 12687 152 46 73 chr3 48167342 48168728 -169868430 + L1MA5 LINE L1 5951 7357 -5 1171 277 85 53 chr3 48168728 48169242 -169867916 + MLT1G1 LTR MaLR 16 595 0 1040 322 114 12 chr3 48169245 48170127 -169867031 - ERVL LTR ERVL -1004 4760 3655 393 250 133 8 chr3 48170452 48170572 -169866586 + L2 LINE L2 3138 3272 0 1005 132 177 21 chr3 48170750 48171014 -169866144 - MER33 DNA MER1_type -1 362 18 2732 57 23 6 chr3 48171230 48171579 -169865579 - L1PA13 LINE L1 0 6163 5809 1582 51 0 15 chr3 48172944 48173139 -169864019 + L1PA6 LINE L1 5963 6154 0 180 191 191 21 chr3 48173497 48173544 -169863614 + L2 LINE L2 3217 3271 -1 188 253 161 35 chr3 48173867 48173954 -169863204 + L3 LINE CR1 849 946 -631 286 278 31 31 chr3 48174058 48174155 -169863003 + L3 LINE CR1 1139 1235 -342 1203 167 32 41 chr3 48174359 48174580 -169862578 - MER20 DNA MER1_type 0 219 1 960 146 0 0 chr3 48174776 48174920 -169862238 - MSTA LTR MaLR 0 428 285 2294 92 7 0 chr3 48175307 48175602 -169861556 + AluSx SINE Alu 1 297 -15 384 241 11 11 chr3 48176017 48176104 -169861054 + L2 LINE L2 3226 3312 -1 262 212 95 5 chr3 48176228 48176333 -169860825 - L1ME LINE L1 -302 5819 5698 1239 253 149 62 chr3 48176343 48177089 -169860069 + HAL1 LINE L1 1111 1921 -586 838 264 106 37 chr3 48177143 48177598 -169859560 + HAL1 LINE L1 2020 2505 -2 233 204 58 78 chr3 48177603 48177614 -169859544 - HAL1b LINE L1 -3 1345 1335 276 229 85 81 chr3 48177614 48177715 -169859443 - L1ME4a LINE L1 -18 6103 6004 2225 108 7 0 chr3 48177715 48178021 -169859137 - AluSc SINE Alu -1 308 1 276 229 85 81 chr3 48178021 48178177 -169858981 - L1ME4a LINE L1 -117 6004 1245 825 217 0 6 chr3 48178203 48178364 -169858794 - FRAM SINE Alu -16 160 1 501 278 113 90 chr3 48178756 48178897 -169858261 - L2 LINE L2 -4 3309 3173 2216 123 0 0 chr3 48178897 48179199 -169857959 + AluSg SINE Alu 1 302 -8 501 278 113 90 chr3 48179199 48179623 -169857535 - L2 LINE L2 -140 3173 2699 1774 171 90 60 chr3 48180171 48180651 -169856507 - L1MB7 LINE L1 -5 6179 5686 1839 133 56 3 chr3 48180799 48181084 -169856074 + AluSx SINE Alu 1 300 -12 4702 48 45 1 chr3 48181306 48181849 -169855309 - L1PA6 LINE L1 -297 5857 5277 201 39 0 0 chr3 48181849 48181875 -169855283 + (TTG)n Simple_repeat Simple_repeat 3 28 0 4702 48 45 1 chr3 48181875 48182187 -169854971 - L1PA6 LINE L1 -877 5277 4980 538 301 101 32 chr3 48182364 48182747 -169854411 - L2 LINE L2 -182 3090 2607 1744 171 3 30 chr3 48183570 48183875 -169853283 + AluJb SINE Alu 1 297 -15 327 237 156 54 chr3 48184072 48184174 -169852984 - MIR SINE MIR -10 252 162 2227 123 0 3 chr3 48184174 48184484 -169852674 - AluSx SINE Alu -3 309 1 327 237 156 54 chr3 48184484 48184567 -169852591 - MIR SINE MIR -100 162 48 673 217 154 59 chr3 48185859 48186154 -169851004 - L1ME3A LINE L1 -1 6162 5849 252 278 104 42 chr3 48187002 48187146 -169850012 + L2 LINE L2 3114 3266 -6 205 367 0 0 chr3 48187412 48187502 -169849656 + G-rich Low_complexity Low_complexity 1 90 0 24 32 0 0 chr3 48188449 48188480 -169848678 + AT_rich Low_complexity Low_complexity 1 31 0 290 256 39 0 chr3 48188482 48188560 -169848598 - MIR SINE MIR 0 262 182 309 297 153 5 chr3 48188640 48188849 -169848309 - L1MB7 LINE L1 -504 5617 5378 26 0 0 0 chr3 48189239 48189265 -169847893 + AT_rich Low_complexity Low_complexity 1 26 0 1275 171 25 96 chr3 48189311 48189633 -169847525 - AluJb SINE Alu -9 303 5 22 56 0 0 chr3 48190202 48190238 -169846920 + AT_rich Low_complexity Low_complexity 1 36 0 3988 27 27 0 chr3 48191054 48191505 -169845653 - L1PA3 LINE L1 0 6155 5693 194 262 49 0 chr3 48191526 48191587 -169845571 + MIR SINE MIR 118 181 -81 868 195 69 0 chr3 48194304 48194478 -169842680 - MER5A DNA MER1_type 0 189 4 198 0 0 0 chr3 48195550 48195572 -169841586 + (T)n Simple_repeat Simple_repeat 1 22 0 278 160 0 0 chr3 48195992 48196042 -169841116 + L1ME LINE L1 5388 5437 -684 2309 90 0 10 chr3 48196056 48196355 -169840803 - AluY SINE Alu -15 296 1 1167 156 0 0 chr3 48198748 48198972 -169838186 - AluSg/x SINE Alu 0 328 105 1028 0 9 0 chr3 48199080 48199195 -169837963 + AluYa5/8 SINE Alu 183 298 -12 780 185 20 100 chr3 48200209 48200409 -169836749 - MER20 DNA MER1_type -7 212 29 283 335 142 44 chr3 48200675 48201084 -169836074 - L2 LINE L2 -1 3271 2823 23 0 0 0 chr3 48201290 48201313 -169835845 + AT_rich Low_complexity Low_complexity 1 23 0 238 325 40 48 chr3 48202125 48202251 -169834907 + MIR SINE MIR 18 142 -120 725 295 115 71 chr3 48202303 48202425 -169834733 - L2 LINE L2 -684 2630 2515 2146 120 0 0 chr3 48202425 48202726 -169834432 - AluSg SINE Alu -9 301 1 725 295 115 71 chr3 48202726 48203550 -169833608 - L2 LINE L2 -799 2515 1642 183 262 71 36 chr3 48203684 48203768 -169833390 - L2 LINE L2 -1897 1417 1331 335 335 173 15 chr3 48203790 48204056 -169833102 - L2 LINE L2 -2667 647 340 23 0 0 0 chr3 48204114 48204137 -169833021 + AT_rich Low_complexity Low_complexity 1 23 0 229 169 0 62 chr3 48204533 48204598 -169832560 + A-rich Low_complexity Low_complexity 1 61 0 2596 48 0 0 chr3 48205092 48205387 -169831771 + AluY SINE Alu 1 295 -16 355 316 137 14 chr3 48206001 48206213 -169830945 + MARNA DNA Mariner 69 306 -280 265 320 13 0 chr3 48206779 48206854 -169830304 + MIR SINE MIR 32 107 -101 326 149 0 0 chr3 48207405 48207452 -169829706 + Alu SINE Alu 2 48 -253 1388 178 0 9 chr3 48207543 48207774 -169829384 + AluJo SINE Alu 64 292 -20 185 327 127 20 chr3 48209162 48209312 -169827846 + MIR3 SINE MIR 26 191 -17 24 0 0 0 chr3 48209654 48209678 -169827480 + AT_rich Low_complexity Low_complexity 1 24 0 2306 257 101 36 chr3 48209743 48210922 -169826236 - L1ME4a LINE L1 -86 6035 4777 1689 160 24 24 chr3 48212035 48212328 -169824830 + AluJo SINE Alu 1 293 -19 25 0 0 0 chr3 48212849 48212874 -169824284 + AT_rich Low_complexity Low_complexity 1 25 0 424 189 74 80 chr3 48212876 48213022 -169824136 - L1MC5 LINE L1 -36 7925 7779 279 0 0 0 chr3 48213022 48213053 -169824105 + (CA)n Simple_repeat Simple_repeat 2 32 0 424 189 74 80 chr3 48213053 48213081 -169824077 - L1MC5 LINE L1 -182 7779 7752 387 326 48 27 chr3 48213192 48213379 -169823779 - L2 LINE L2 -954 2360 2170 1708 107 126 19 chr3 48213511 48213781 -169823377 - AluSx SINE Alu -13 299 1 314 317 40 0 chr3 48219343 48219444 -169817714 + MIR3 SINE MIR 57 161 -47 226 253 77 16 chr3 48220196 48220320 -169816838 + MIR SINE MIR 32 165 -62 487 280 69 11 chr3 48221465 48221640 -169815518 + MIR SINE MIR 23 207 -55 2027 142 56 0 chr3 48222147 48222471 -169814687 - MER7A DNA MER2_type 0 346 7 1059 252 90 34 chr3 48225829 48226382 -169810776 + L2 LINE L2 2698 3301 -12 1054 141 53 103 chr3 48227303 48227431 -169809727 - MER4C LTR ERV1 -215 250 140 2192 119 0 6 chr3 48227431 48227742 -169809416 - AluSg SINE Alu -1 309 1 1054 141 53 103 chr3 48227742 48227876 -169809282 - MER4C LTR ERV1 -325 140 1 623 291 76 16 chr3 48227969 48228220 -169808938 + MER90 LTR ERV1 197 462 -152 296 296 41 10 chr3 48228235 48228333 -169808825 + LTR65 LTR ERV1 553 653 -16 1670 155 99 18 chr3 48228390 48228742 -169808416 - MLT1B LTR MaLR -10 416 4 479 331 43 11 chr3 48229142 48229214 -169807944 - MIR SINE MIR -40 222 154 1986 85 39 72 chr3 48229214 48229519 -169807639 - AluSx SINE Alu -17 295 1 479 331 43 11 chr3 48229519 48229630 -169807528 - MIR SINE MIR -108 154 33 225 0 0 0 chr3 48230388 48230413 -169806745 + (CA)n Simple_repeat Simple_repeat 2 26 0 1926 138 0 3 chr3 48231744 48232034 -169805124 - AluYb8 SINE Alu -29 289 1 372 119 15 0 chr3 48232034 48232101 -169805057 + MSTD LTR MaLR 327 394 -2 235 328 119 0 chr3 48233087 48233221 -169803937 - MIR SINE MIR -27 235 86 2427 72 7 0 chr3 48234097 48234390 -169802768 - AluY SINE Alu -16 295 1 2052 277 103 54 chr3 48234398 48235486 -169801672 - L2 LINE L2 -779 2535 1395 459 228 135 50 chr3 48236518 48236799 -169800359 + L1ME4a LINE L1 5661 5965 -156 21 0 0 0 chr3 48236799 48236820 -169800338 + AT_rich Low_complexity Low_complexity 1 21 0 233 281 28 62 chr3 48236829 48237007 -169800151 - L1MC/D LINE L1 -1914 5894 5723 5133 164 6 16 chr3 48237010 48237970 -169799188 - L1MA7 LINE L1 -4 6287 5337 376 307 49 18 chr3 48237971 48238134 -169799024 + L1ME4a LINE L1 5951 6118 -3 318 187 0 99 chr3 48238118 48238209 -169798949 + L1ME LINE L1 5347 5428 -693 * 304 331 153 0 chr3 48239359 48239522 -169797636 + MIR3 SINE MIR 14 201 -7 570 224 98 29 chr3 48239613 48239818 -169797340 - MIR SINE MIR 0 262 44 294 245 113 0 chr3 48240341 48240447 -169796711 + L2 LINE L2 2913 3030 -242 300 277 51 28 chr3 48240646 48240823 -169796335 + L1ME LINE L1 5606 5786 -335 220 216 78 0 chr3 48241594 48241645 -169795513 - MIR SINE MIR -91 171 117 253 241 23 23 chr3 48242105 48242192 -169794966 + MLT1K LTR MaLR 180 266 -322 182 354 191 0 chr3 48243851 48244029 -169793129 - MIR SINE MIR -6 256 45 2314 105 0 3 chr3 48244029 48244324 -169792834 - AluSx SINE Alu -18 294 1 651 177 9 0 chr3 48244740 48244853 -169792305 - MER81 DNA DNA 0 114 1 371 309 163 6 chr3 48245940 48246118 -169791040 + MIR SINE MIR 47 252 -10 1680 186 34 29 chr3 48247284 48247670 -169789488 + MLT1B LTR MaLR 1 388 -2 1172 259 121 5 chr3 48247903 48248300 -169788858 + MLT1E2 LTR MaLR 184 626 0 191 143 29 0 chr3 48248558 48248593 -169788565 - MIR SINE MIR -110 152 117 249 269 9 111 chr3 48248653 48248726 -169788432 + MIR SINE MIR 53 113 -149 2318 112 0 0 chr3 48248726 48249029 -169788129 + AluSx SINE Alu 1 303 -9 249 269 9 111 chr3 48249029 48249063 -169788095 + MIR SINE MIR 113 149 -113 225 306 66 31 chr3 48249863 48250059 -169787099 - L2 LINE L2 -1241 2073 1871 1963 115 31 3 chr3 48250235 48250521 -169786637 + AluJo SINE Alu 1 294 -18 202 216 0 0 chr3 48250751 48250788 -169786370 - L2 LINE L2 -32 3240 3204 37 39 0 0 chr3 48250807 48250858 -169786300 + AT_rich Low_complexity Low_complexity 1 51 0 1758 240 154 12 chr3 48251096 48251609 -169785549 + MLT1G1 LTR MaLR 1 586 -9 393 307 43 14 chr3 48251615 48251755 -169785403 - L2 LINE L2 -4 3268 3125 556 333 66 5 chr3 48252861 48253059 -169784099 + MER115 DNA AcHobo 175 384 -309 375 333 70 50 chr3 48253185 48253588 -169783570 - L2 LINE L2 -345 2969 2559 2458 165 33 52 chr3 48254476 48255028 -169782130 + MER34B LTR ERV1 11 524 -41 2370 114 7 0 chr3 48255038 48255346 -169781812 + AluSx SINE Alu 1 310 -2 1262 190 34 8 chr3 48256043 48256311 -169780847 + ORSL DNA AcHobo 1 275 0 291 341 56 8 chr3 48257209 48257335 -169779823 - L2 LINE L2 0 3313 3182 1059 249 42 25 chr3 48257385 48257670 -169779488 + MLT1G LTR MaLR 33 322 -268 414 186 0 0 chr3 48257660 48257730 -169779428 + MLT1G LTR MaLR 428 497 -93 * 1053 281 42 44 chr3 48257763 48258410 -169778748 - L2 LINE L2 -126 3187 2534 506 324 92 11 chr3 48258971 48259233 -169777925 + L2 LINE L2 3027 3309 -4 22 35 0 0 chr3 48259366 48259395 -169777763 + AT_rich Low_complexity Low_complexity 1 29 0 879 42 100 0 chr3 48259452 48259572 -169777586 - MER85 DNA T2_type -7 132 1 299 203 145 0 chr3 48259572 48259641 -169777517 - MIR SINE MIR -66 196 118 600 288 77 55 chr3 48260024 48260403 -169776755 + L2 LINE L2 2921 3307 -6 414 0 0 0 chr3 48260681 48260727 -169776431 + (TG)n Simple_repeat Simple_repeat 1 46 0 295 173 74 62 chr3 48267444 48267525 -169769633 - MIR3 SINE MIR -15 193 112 515 281 60 6 chr3 48268644 48268811 -169768347 - MIR3 SINE MIR -2 206 31 993 78 0 0 chr3 48270486 48270601 -169766557 - AluSx SINE Alu -159 153 39 203 323 15 85 chr3 48271315 48271391 -169765767 + MIR SINE MIR 141 206 -56 2174 112 14 10 chr3 48271391 48271686 -169765472 + AluSx SINE Alu 1 296 -16 203 323 15 85 chr3 48271686 48271739 -169765419 + MIR SINE MIR 206 261 -1 722 205 7 0 chr3 48271888 48272039 -169765119 - MER3 DNA MER1_type 0 209 58 275 226 61 17 chr3 48272776 48272891 -169764267 + L1MC4a LINE L1 5697 5816 -1992 418 254 25 0 chr3 48272928 48273046 -169764112 + L1MC4a LINE L1 5813 5933 -1875 214 373 25 25 chr3 48273357 48273475 -169763683 - MIR SINE MIR -112 150 33 191 393 82 0 chr3 48273515 48273637 -169763521 + L2 LINE L2 3141 3272 0 271 290 124 47 chr3 48275357 48275526 -169761632 - MIR SINE MIR -78 184 3 221 266 0 96 chr3 48275794 48275888 -169761270 + L3b LINE CR1 1189 1273 -310 427 272 44 0 chr3 48275928 48276042 -169761116 + MIR3 SINE MIR 75 193 -15 1733 157 32 0 chr3 48276077 48276357 -169760801 - AluJo SINE Alu -23 289 1 940 182 0 0 chr3 48278072 48278231 -169758927 - AluJo SINE Alu -83 229 71 247 282 51 0 chr3 48278231 48278309 -169758849 + Charlie8 DNA MER1_type 146 227 -2190 591 204 62 31 chr3 48278373 48278603 -169758555 + MER106B DNA MER1_type 1 1056 -3 263 301 14 0 chr3 48279462 48279535 -169757623 - MIR3 SINE MIR -54 154 81 409 248 40 25 chr3 48280065 48280371 -169756787 - LTR16A LTR ERVL -6 444 71 320 276 83 50 chr3 48280486 48280667 -169756491 - L1ME4a LINE L1 -257 5864 5678 187 355 55 9 chr3 48281951 48282061 -169755097 - L2 LINE L2 -1408 1906 1792 1962 140 0 19 chr3 48282170 48282484 -169754674 + AluJo SINE Alu 5 312 0 427 259 124 79 chr3 48282996 48283272 -169753886 - L1 LINE L1 -2760 3386 3140 1343 204 46 25 chr3 48283272 48283557 -169753601 - AluJo SINE Alu -21 291 1 427 259 124 79 chr3 48283557 48283656 -169753502 - L1 LINE L1 -3006 3140 3047 808 147 15 37 chr3 48283657 48283793 -169753365 - AluJo SINE Alu -178 134 2 384 306 37 37 chr3 48283796 48284041 -169753117 - L1 LINE L1 -3060 3086 2842 879 250 92 21 chr3 48284359 48284798 -169752360 - MLT1J LTR MaLR -7 504 1 354 302 45 80 chr3 48285128 48285341 -169751817 + MIR SINE MIR 34 260 -2 267 79 0 0 chr3 48286419 48286457 -169750701 + (A)n Simple_repeat Simple_repeat 1 38 0 543 226 23 23 chr3 48286519 48286652 -169750506 + MER5B DNA MER1_type 44 176 -2 247 257 27 27 chr3 48288610 48288684 -169748474 + MIR SINE MIR 65 138 -70 2036 136 0 7 chr3 48288813 48289122 -169748036 + AluSx SINE Alu 1 307 -5 370 346 49 7 chr3 48289878 48290096 -169747062 + L1ME LINE L1 830 1045 -1396 365 272 144 70 chr3 48290639 48291161 -169745997 + L1MC4a LINE L1 5315 5884 -1924 2404 84 3 0 chr3 48291161 48291472 -169745686 + AluSx SINE Alu 1 312 0 365 272 144 70 chr3 48291472 48291518 -169745640 + L1MC4a LINE L1 5884 5925 -1883 489 237 205 26 chr3 48292468 48292624 -169744534 - MER5A DNA MER1_type 0 189 6 505 264 56 14 chr3 48292807 48292951 -169744207 - L2 LINE L2 -6 3307 3158 414 0 0 0 chr3 48293274 48293320 -169743838 + (CA)n Simple_repeat Simple_repeat 2 47 0 239 130 0 22 chr3 48293425 48293471 -169743687 + (CA)n Simple_repeat Simple_repeat 2 46 0 219 269 82 68 chr3 48293617 48293836 -169743322 - L2 LINE L2 -64 3249 3028 316 362 112 13 chr3 48294540 48294764 -169742394 + MIR SINE MIR 16 261 -1 255 197 0 49 chr3 48296712 48296773 -169740385 + L2 LINE L2 3256 3313 0 271 325 152 0 chr3 48298169 48298320 -169738838 - MIR SINE MIR -1 261 88 2183 129 73 66 chr3 48298330 48298755 -169738403 - MSTC LTR MaLR 0 428 1 1759 148 11 0 chr3 48298789 48299073 -169738085 - MER7A DNA MER2_type -61 285 1 191 233 56 38 chr3 48299075 48299147 -169738011 - MIR SINE MIR -133 75 8 274 316 54 84 chr3 48300504 48300801 -169736357 - L2 LINE L2 0 3272 2985 288 195 244 0 chr3 48300884 48300966 -169736192 - L2 LINE L2 -767 2547 2446 824 254 68 21 chr3 48302424 48302568 -169734590 + MIR SINE MIR 16 177 -85 2257 73 3 13 chr3 48302568 48302869 -169734289 + AluY SINE Alu 1 298 -13 824 254 68 21 chr3 48302869 48302960 -169734198 + MIR SINE MIR 177 262 0 232 304 43 11 chr3 48303569 48303661 -169733497 + MIR SINE MIR 35 129 -79 202 261 138 0 chr3 48306549 48306614 -169730544 + MIR3 SINE MIR 100 173 -35 484 291 141 0 chr3 48307702 48307908 -169729250 - MIR SINE MIR -21 241 7 270 164 179 0 chr3 48312462 48312529 -169724629 - MER116 DNA Mariner 0 80 2 731 173 25 25 chr3 48312618 48312780 -169724378 + MER106B DNA MER1_type 898 1059 0 278 153 17 0 chr3 48313814 48313873 -169723285 + (CA)n Simple_repeat Simple_repeat 2 61 0 348 64 0 0 chr3 48313996 48314043 -169723115 + (TG)n Simple_repeat Simple_repeat 2 48 0 251 320 74 58 chr3 48315230 48315539 -169721619 + L2 LINE L2 2184 2497 -817 591 255 183 14 chr3 48315692 48315900 -169721258 + MIR SINE MIR 17 259 -3 776 204 69 99 chr3 48315915 48316278 -169720880 + L1ME2 LINE L1 5811 6162 -2 199 351 186 11 chr3 48316306 48316585 -169720573 + L2 LINE L2 2615 2942 -372 1184 199 111 21 chr3 48316680 48317012 -169720146 + MLT1A2 LTR MaLR 1 362 -12 438 293 30 8 chr3 48318759 48318892 -169718266 - L2 LINE L2 0 3272 3137 211 292 56 0 chr3 48319090 48319162 -169717996 - L2 LINE L2 -541 2773 2698 25 0 0 0 chr3 48319751 48319776 -169717382 + GC_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr3 48320042 48320068 -169717090 + GC_rich Low_complexity Low_complexity 1 26 0 237 250 32 57 chr3 48320668 48320792 -169716366 - MIR3 SINE MIR -25 183 63 227 318 134 22 chr3 48321299 48321478 -169715680 + L2 LINE L2 2919 3117 -155 207 323 92 23 chr3 48321790 48321920 -169715238 + L2 LINE L2 2738 2876 -438 2261 86 0 10 chr3 48321978 48322281 -169714877 - AluSx SINE Alu -12 300 1 239 290 0 0 chr3 48322530 48322592 -169714566 + L2 LINE L2 3155 3216 -56 263 276 115 0 chr3 48323030 48323117 -169714041 + MIR3 SINE MIR 104 200 -8 581 279 72 60 chr3 48323698 48323801 -169713357 + L1ME3 LINE L1 5423 5523 -639 1815 144 0 0 chr3 48323801 48324064 -169713094 - AluSq SINE Alu -50 263 1 581 279 72 60 chr3 48324064 48324375 -169712783 + L1ME3 LINE L1 5523 5842 -320 476 148 45 22 chr3 48324375 48324464 -169712694 + MSTC LTR MaLR 1 93 -335 741 223 97 15 chr3 48324469 48324675 -169712483 + L1ME3 LINE L1 5910 6132 -30 1925 231 153 61 chr3 48324864 48325570 -169711588 - MER21B LTR ERV1 -76 787 17 761 191 12 6 chr3 48325643 48325805 -169711353 - L1M4 LINE L1 -1098 5048 4886 1007 198 11 0 chr3 48326307 48326494 -169710664 + MER5A DNA MER1_type 1 189 0 871 259 118 10 chr3 48326550 48326897 -169710261 - L1ME LINE L1 -461 5701 5318 1687 158 3 30 chr3 48327020 48327317 -169709841 - AluJo SINE Alu -9 303 15 390 304 108 60 chr3 48327424 48327887 -169709271 - L1ME LINE L1 -1113 5033 4549 629 161 105 32 chr3 48327889 48328013 -169709145 - AluJo SINE Alu -178 134 2 2265 106 0 10 chr3 48328066 48328201 -169708957 + AluSq SINE Alu 1 136 -177 2490 82 0 0 chr3 48328201 48328506 -169708652 + AluSq SINE Alu 1 305 -8 2265 106 0 10 chr3 48328506 48328672 -169708486 + AluSq SINE Alu 136 299 -14 1968 147 3 0 chr3 48328690 48328983 -169708175 + AluJo SINE Alu 10 303 -9 1664 178 0 4 chr3 48329008 48329284 -169707874 - AluJo SINE Alu -9 303 29 347 333 0 34 chr3 48330331 48330448 -169706710 + MIR SINE MIR 49 161 -101 378 290 43 37 chr3 48330467 48330629 -169706529 - LTR16B LTR ERVL -8 456 294 652 291 45 9 chr3 48332821 48333044 -169704114 + MIR SINE MIR 5 235 -27 2576 58 0 3 chr3 48333203 48333512 -169703646 - AluY SINE Alu -3 308 1 1853 183 81 143 chr3 48333865 48334646 -169702512 - L1MC4 LINE L1 0 8042 7333 1086 161 28 9 chr3 48334646 48334857 -169702301 + L1MA7 LINE L1 6068 6282 -9 1853 183 81 143 chr3 48334857 48335051 -169702107 - L1MC4 LINE L1 -709 7333 7128 405 280 82 48 chr3 48335063 48335314 -169701844 + LTR16A LTR ERVL 1 260 -190 1937 113 36 10 chr3 48335321 48335622 -169701536 + L1PA15 LINE L1 5856 6164 -1 395 337 82 0 chr3 48335626 48335822 -169701336 - L1MC4a LINE L1 -1109 6699 6488 2222 108 0 3 chr3 48335856 48336178 -169700980 + AluSx SINE Alu 1 321 0 1172 72 0 0 chr3 48336485 48336637 -169700521 - L1PA15 LINE L1 -147 6018 5867 707 297 92 35 chr3 48336635 48337201 -169699957 + L1MEd LINE L1 380 977 -5142 * 507 265 107 10 chr3 48337923 48338119 -169699039 + LTR37A LTR ERV1 47 261 -165 584 247 24 12 chr3 48338127 48338297 -169698861 - L1ME3A LINE L1 -316 5854 5683 264 205 116 62 chr3 48338460 48338572 -169698586 + L1ME3 LINE L1 5961 6078 -84 255 61 0 0 chr3 48340229 48340262 -169696896 + (T)n Simple_repeat Simple_repeat 1 33 0 1504 109 14 0 chr3 48340565 48340776 -169696382 + AluSp SINE Alu 99 312 -1 24 67 0 0 chr3 48340923 48340968 -169696190 + AT_rich Low_complexity Low_complexity 1 45 0 540 184 188 54 chr3 48340987 48341248 -169695910 - L1MC5 LINE L1 -30 7931 7636 238 242 144 30 chr3 48341251 48341383 -169695775 - L1ME LINE L1 -218 5903 5757 223 253 241 0 chr3 48342018 48342101 -169695057 + MER5A DNA MER1_type 7 109 -80 831 241 62 48 chr3 48343504 48343794 -169693364 - LTR40c LTR ERVL -130 335 42 612 259 5 85 chr3 48344399 48344480 -169692678 - MIR SINE MIR -34 228 142 1834 183 3 0 chr3 48344480 48344780 -169692378 - AluJo SINE Alu -11 301 1 612 259 5 85 chr3 48344780 48344922 -169692236 - MIR SINE MIR -120 142 23 282 205 131 29 chr3 48344923 48345058 -169692100 + MER106B DNA MER1_type 3 978 -81 1516 155 24 24 chr3 48345058 48345089 -169692069 + L1MA2 LINE L1 6001 6031 -273 2399 85 0 0 chr3 48345089 48345384 -169691774 + AluSg SINE Alu 1 295 -15 414 0 0 0 chr3 48345385 48345431 -169691727 + (TA)n Simple_repeat Simple_repeat 1 46 0 1516 155 24 24 chr3 48345431 48345688 -169691470 + L1MA2 LINE L1 6030 6291 -13 1551 170 39 77 chr3 48346040 48346429 -169690729 - MLT1A2 LTR MaLR 0 374 1 1316 191 117 31 chr3 48346645 48347037 -169690121 + LTR37A LTR ERV1 1 426 0 256 267 29 9 chr3 48347112 48347217 -169689941 + L2 LINE L2 2395 2501 -813 2038 200 98 9 chr3 48347221 48347680 -169689478 + MLT1D LTR MaLR 6 505 0 556 284 35 0 chr3 48347684 48347853 -169689305 + L2 LINE L2 2500 2674 -640 805 303 50 7 chr3 48347941 48348241 -169688917 - HERV16 LTR ERVL -4683 313 1 975 221 24 113 chr3 48348241 48348566 -169688592 - LTR16A LTR ERVL 0 450 168 2374 94 0 3 chr3 48348566 48348875 -169688283 - AluSx SINE Alu -4 308 1 975 221 24 113 chr3 48348875 48348965 -169688193 - LTR16A LTR ERVL -282 168 72 228 308 209 6 chr3 48349026 48349198 -169687960 + L2 LINE L2 2687 2893 -421 197 279 98 0 chr3 48349205 48349266 -169687892 - L2 LINE L2 -3 3310 3244 1016 173 89 5 chr3 48349267 48349458 -169687700 + MER58A DNA MER1_type 13 219 -5 303 49 0 0 chr3 48349485 48349526 -169687632 + (CA)n Simple_repeat Simple_repeat 2 42 0 1072 203 15 9 chr3 48349550 48349798 -169687360 - MER33 DNA MER1_type -82 242 1 317 191 0 56 chr3 48349801 48349890 -169687268 - L2 LINE L2 -67 3246 3163 663 226 85 57 chr3 48349904 48350116 -169687042 + MER77 LTR ERV1 375 592 -13 206 336 8 16 chr3 48350377 48350499 -169686659 + (TTAGGG)n Simple_repeat Simple_repeat 5 125 0 306 268 129 54 chr3 48351341 48351565 -169685593 + HAL1b LINE L1 435 675 -673 2140 108 11 0 chr3 48351825 48352112 -169685046 + AluSx SINE Alu 1 290 -22 350 188 119 0 chr3 48352193 48352294 -169684864 - HAL1 LINE L1 -694 1882 1770 426 235 131 79 chr3 48352302 48352583 -169684575 - L1MEc LINE L1 -865 1711 1360 306 248 90 60 chr3 48352631 48352764 -169684394 + HAL1 LINE L1 816 952 -1555 1013 279 63 12 chr3 48352773 48353200 -169683958 + L2 LINE L2 1199 1647 -1667 2498 56 17 0 chr3 48353402 48353704 -169683454 - AluY SINE Alu -4 307 1 5919 104 20 6 chr3 48353739 48354596 -169682562 + L1PA13 LINE L1 5295 6163 0 1162 0 14 0 chr3 48355050 48355188 -169681970 + (TTTC)n Simple_repeat Simple_repeat 2 141 0 221 349 12 0 chr3 48355683 48355769 -169681389 + L2 LINE L2 3193 3279 -34 739 186 108 78 chr3 48355934 48356138 -169681020 - MER63A DNA MER1_type 0 210 1 512 272 68 11 chr3 48356140 48356331 -169680827 + MIR SINE MIR 54 255 -7 1249 246 189 22 chr3 48356334 48356736 -169680422 - MLT1G1 LTR MaLR -1 594 126 2139 116 7 0 chr3 48356736 48357029 -169680129 - AluSx SINE Alu -13 299 5 1572 272 115 12 chr3 48357041 48357692 -169679466 + L2 LINE L2 1842 2559 -755 10380 24 19 133 chr3 48357837 48359347 -169677811 + SVA Other Other 48 1386 0 1547 134 38 107 chr3 48359353 48359938 -169677220 - L1MC/D LINE L1 -650 5986 5457 234 0 0 0 chr3 48359938 48359964 -169677194 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1547 134 38 107 chr3 48359964 48360058 -169677100 - L1MC/D LINE L1 -1179 5457 5358 4044 171 58 41 chr3 48360064 48360485 -169676673 - L1MC/D LINE L1 -3890 2650 2238 2591 74 0 0 chr3 48360485 48360795 -169676363 - AluY SINE Alu -1 310 1 4044 171 58 41 chr3 48360795 48361370 -169675788 - L1MC/D LINE L1 -4302 2238 1637 2342 116 0 0 chr3 48361610 48361954 -169675204 - AluSq SINE Alu 0 344 1 1966 159 16 14 chr3 48362019 48362383 -169674775 + MER47A DNA MER2_type 1 365 -1 828 251 106 20 chr3 48362968 48363373 -169673785 - LTR16C LTR ERVL -14 477 1 208 151 38 19 chr3 48363594 48363647 -169673511 + (TTA)n Simple_repeat Simple_repeat 3 56 0 463 275 172 42 chr3 48364389 48364720 -169672438 + MLT1L LTR MaLR 40 413 -202 621 274 106 22 chr3 48365008 48365282 -169671876 + LTR33 LTR ERVL 112 408 -113 540 70 0 0 chr3 48365373 48365444 -169671714 - MER41A LTR ERV1 -86 468 398 21 0 0 0 chr3 48365509 48365530 -169671628 + AT_rich Low_complexity Low_complexity 1 21 0 908 270 55 37 chr3 48365962 48366104 -169671054 + L2 LINE L2 2483 2621 -693 568 234 18 0 chr3 48366104 48366215 -169670943 - MER81 DNA DNA -1 113 1 908 270 55 37 chr3 48366215 48366398 -169670760 + L2 LINE L2 2621 2814 -500 213 381 10 0 chr3 48366384 48366481 -169670677 - L2 LINE L2 -916 2398 2301 * 39 50 0 0 chr3 48366687 48366747 -169670411 + AT_rich Low_complexity Low_complexity 1 60 0 2795 224 37 134 chr3 48366750 48368000 -169669158 - L1MC4 LINE L1 -169 7873 6746 322 275 9 18 chr3 48368593 48368702 -169668456 - MIR3 SINE MIR -48 160 53 332 274 0 0 chr3 48368702 48368786 -169668372 + MER96 DNA MER1_type? 1 84 -91 243 22 22 43 chr3 48369355 48369401 -169667757 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 208 271 14 14 chr3 48369455 48369525 -169667633 + L2 LINE L2 2549 2618 -696 2134 182 39 63 chr3 48369582 48370171 -169666987 + L1M4 LINE L1 4144 4718 -1428 735 141 38 130 chr3 48370362 48370500 -169666658 + MLT2C2 LTR ERVL 297 415 -49 288 53 0 0 chr3 48370500 48370538 -169666620 + (CCA)n Simple_repeat Simple_repeat 1 38 0 735 141 38 130 chr3 48370538 48370584 -169666574 + MLT2C2 LTR ERVL 415 464 0 544 260 115 133 chr3 48371100 48371500 -169665658 - MLT1K LTR MaLR -16 572 180 3515 94 2 0 chr3 48371783 48372261 -169664897 + L1PA13 LINE L1 5684 6162 -1 1914 79 0 4 chr3 48372940 48373192 -169663966 - L1PA13 LINE L1 -4 6159 5909 250 291 51 51 chr3 48373596 48373713 -169663445 + L2 LINE L2 3197 3313 0 241 264 28 0 chr3 48373871 48373943 -169663215 - L3 LINE CR1 -196 1381 1308 225 279 0 38 chr3 48374315 48374394 -169662764 - MIR SINE MIR -34 228 153 1990 157 0 0 chr3 48374397 48374696 -169662462 - AluSx SINE Alu -11 301 3 273 263 84 0 chr3 48374940 48375035 -169662123 - MIR SINE MIR -108 154 52 1592 172 10 27 chr3 48375338 48375635 -169661523 + AluJo SINE Alu 11 302 -10 28 0 0 0 chr3 48375908 48375936 -169661222 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 48376742 48376763 -169660395 + GC_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr3 48377096 48377128 -169660030 + AT_rich Low_complexity Low_complexity 1 32 0 334 299 48 61 chr3 48377264 48377618 -169659540 + L2 LINE L2 2709 3140 -173 447 252 59 37 chr3 48377899 48378034 -169659124 + L2 LINE L2 3168 3305 -8 897 279 60 11 chr3 48378242 48378511 -169658647 - MLT1K LTR MaLR 0 588 307 1964 271 71 23 chr3 48378698 48379517 -169657641 - L2 LINE L2 -740 2574 1717 25 0 0 0 chr3 48379564 48379589 -169657569 + AT_rich Low_complexity Low_complexity 1 25 0 3444 164 46 6 chr3 48379596 48380229 -169656929 - L1MD1 LINE L1 -2 6240 5583 585 284 138 17 chr3 48381007 48381239 -169655919 - MIR SINE MIR 0 262 3 1238 190 27 30 chr3 48381702 48381997 -169655161 + MER33 DNA MER1_type 1 294 -30 275 222 19 0 chr3 48382249 48382303 -169654855 + L2 LINE L2 3134 3188 -84 23 0 0 0 chr3 48383162 48383185 -169653973 + GC_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr3 48383191 48383220 -169653938 + GC_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr3 48383220 48383251 -169653907 + AT_rich Low_complexity Low_complexity 1 31 0 33 48 0 0 chr3 48383251 48383293 -169653865 + GC_rich Low_complexity Low_complexity 1 42 0 596 195 84 119 chr3 48384425 48384651 -169652507 + MLT1A1 LTR MaLR 1 218 -147 23 0 0 0 chr3 48385541 48385564 -169651594 + AT_rich Low_complexity Low_complexity 1 23 0 1708 144 61 11 chr3 48385637 48385914 -169651244 + AluJb SINE Alu 1 291 -21 1449 108 47 0 chr3 48385924 48386138 -169651020 + L1P5 LINE L1 5416 5639 -515 446 252 13 5 chr3 48386652 48386783 -169650375 + LTR43 LTR ERV1 189 472 -207 734 97 10 0 chr3 48388907 48389010 -169648148 + FLAM_C SINE Alu 2 105 -38 1730 165 46 0 chr3 48389209 48389494 -169647664 - AluJb SINE Alu -11 301 4 329 261 78 0 chr3 48389537 48389652 -169647506 - L1M4 LINE L1 -1922 4224 4101 751 258 64 30 chr3 48389686 48389984 -169647174 - MLT1C LTR MaLR -46 421 114 2650 145 37 0 chr3 48390326 48390760 -169646398 - L1PB3 LINE L1 -1 6153 5704 2798 179 66 28 chr3 48390905 48391515 -169645643 + L1MB7 LINE L1 5432 6064 -120 4941 72 12 6 chr3 48391524 48392193 -169644965 + L1PA8 LINE L1 5495 6167 -5 5877 207 118 29 chr3 48392445 48394054 -169643104 - L1MDa LINE L1 -4707 1833 81 430 219 130 18 chr3 48394075 48394244 -169642914 - L2 LINE L2 -1640 1674 1487 233 346 12 0 chr3 48394321 48394402 -169642756 - L2 LINE L2 -260 3053 2972 1275 184 125 61 chr3 48394907 48395033 -169642125 + Charlie2 DNA MER1_type 1958 2075 -787 1793 183 0 31 chr3 48395033 48395355 -169641803 + AluJb SINE Alu 1 312 0 1275 184 125 61 chr3 48395355 48395653 -169641505 + Charlie2 DNA MER1_type 2075 2409 -453 2121 175 37 30 chr3 48396195 48396659 -169640499 + MLT1C LTR MaLR 1 467 0 958 209 156 36 chr3 48396730 48397122 -169640036 + LTR16A1 LTR ERVL 19 457 0 621 231 14 0 chr3 48397519 48397662 -169639496 - L2 LINE L2 0 3313 3169 248 122 0 0 chr3 48398072 48398113 -169639045 + MIR SINE MIR 83 123 -85 970 93 0 0 chr3 48398125 48398254 -169638904 - L1PA12 LINE L1 -67 6101 5973 6277 88 20 22 chr3 48398800 48399618 -169637540 - L1PA13 LINE L1 -2 6161 5344 2494 69 0 3 chr3 48399618 48399923 -169637235 + AluY SINE Alu 1 304 -7 6277 88 20 22 chr3 48399923 48400014 -169637144 - L1PA13 LINE L1 -819 5344 5254 228 219 62 16 chr3 48400016 48400080 -169637078 + MER102b DNA MER1_type 47 113 -228 1793 175 0 14 chr3 48400432 48400718 -169636440 - AluJb SINE Alu -27 285 4 1320 255 13 10 chr3 48400728 48401038 -169636120 + MER93a LTR ERV1 92 402 0 390 291 27 0 chr3 48401134 48401244 -169635914 - MER81 DNA DNA 0 114 2 236 246 115 0 chr3 48401414 48401475 -169635683 + MER3 DNA MER1_type 1 68 -141 1993 129 17 14 chr3 48401480 48401774 -169635384 + AluSq SINE Alu 1 295 -18 6233 88 10 9 chr3 48402307 48403731 -169633427 + L1PA8A LINE L1 4440 5861 -270 475 250 60 30 chr3 48403870 48404038 -169633120 + MER102b DNA MER1_type 163 335 -6 399 275 28 51 chr3 48404336 48404391 -169632767 + MER5B DNA MER1_type 5 60 -118 2238 113 3 3 chr3 48404391 48404693 -169632465 + AluSq SINE Alu 1 302 -11 399 275 28 51 chr3 48404693 48404815 -169632343 + MER5B DNA MER1_type 60 178 0 253 219 178 18 chr3 48405066 48405235 -169631923 - MER67C LTR ERV1 -413 297 102 970 265 3 3 chr3 48405240 48405531 -169631627 + AluSq SINE Alu 6 296 -17 306 243 0 58 chr3 48405531 48405634 -169631524 - MER67C LTR ERV1 -604 106 10 189 0 0 0 chr3 48405893 48405914 -169631244 + (T)n Simple_repeat Simple_repeat 1 21 0 44646 39 9 3 chr3 48456482 48462264 -169574894 - L1P2 LINE L1 -339 5815 4 610 179 21 43 chr3 48462724 48462864 -169574294 + LTR45 LTR ERV1 389 525 0 420 255 0 10 chr3 48463470 48463568 -169573590 + MIR SINE MIR 69 165 -97 523 219 35 59 chr3 48463718 48463887 -169573271 + L1MC4 LINE L1 7583 7747 -295 308 183 211 0 chr3 48463984 48464055 -169573103 + L2 LINE L2 3227 3312 -1 483 333 50 15 chr3 48464626 48464824 -169572334 - MIR3 SINE MIR -3 205 1 2230 93 3 0 chr3 48465057 48465357 -169571801 + AluSq SINE Alu 1 301 -12 319 265 129 35 chr3 48465559 48465729 -169571429 - MIR SINE MIR -6 256 71 1762 68 0 0 chr3 48466208 48466428 -169570730 - AluY SINE Alu -10 301 82 201 291 233 19 chr3 48466667 48466877 -169570281 + L2 LINE L2 2694 2948 -366 519 271 122 50 chr3 48467383 48467564 -169569594 - MIR3 SINE MIR -8 200 7 1671 154 4 0 chr3 48468007 48468279 -169568879 - AluJo SINE Alu -30 282 10 240 250 117 83 chr3 48468332 48468350 -169568808 - MIR SINE MIR -82 126 110 2037 121 7 0 chr3 48468350 48468648 -169568510 + AluSx SINE Alu 1 300 -12 240 250 117 83 chr3 48468648 48468749 -169568409 - MIR SINE MIR -98 110 3 1108 125 6 0 chr3 48468857 48469017 -169568141 - MLT2C1 LTR ERVL -236 161 1 1904 105 51 24 chr3 48469067 48469362 -169567796 + AluSp SINE Alu 1 303 -10 2247 68 27 0 chr3 48471475 48471769 -169565389 - AluY SINE Alu -9 302 1 22 0 0 0 chr3 48471771 48471793 -169565365 + AT_rich Low_complexity Low_complexity 1 22 0 444 168 84 0 chr3 48472152 48472247 -169564911 - Charlie5 DNA MER1_type -27 2585 2483 714 141 0 31 chr3 48472247 48472375 -169564783 - FLAM_C SINE Alu -18 125 2 531 141 235 0 chr3 48472376 48472525 -169564633 - Charlie5 DNA MER1_type -77 2535 2352 24 53 0 0 chr3 48472610 48472648 -169564510 + AT_rich Low_complexity Low_complexity 1 38 0 2207 105 0 3 chr3 48474290 48474603 -169562555 - AluSx SINE Alu 0 312 1 246 349 12 0 chr3 48475165 48475251 -169561907 - L2 LINE L2 -4 3268 3182 260 257 79 79 chr3 48475361 48475575 -169561583 - L2 LINE L2 -366 2948 2735 267 279 196 72 chr3 48475741 48475803 -169561355 - L2 LINE L2 -565 2749 2696 1630 178 24 3 chr3 48475803 48476095 -169561063 + AluJb SINE Alu 1 298 -14 267 279 196 72 chr3 48476095 48476587 -169560571 - L2 LINE L2 -618 2696 2126 333 310 97 0 chr3 48476703 48476858 -169560300 + MIR SINE MIR 53 222 -40 380 265 215 14 chr3 48477058 48477337 -169559821 - L2 LINE L2 -918 2396 2062 240 35 0 0 chr3 48478138 48478167 -169558991 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 250 191 44 15 chr3 48479340 48479408 -169557750 + HAL1 LINE L1 1214 1283 -1224 2371 103 0 3 chr3 48479413 48479724 -169557434 + AluSq SINE Alu 4 313 0 285 243 0 14 chr3 48479748 48479822 -169557336 - MER116 DNA Mariner -6 74 2 1101 228 71 102 chr3 48479823 48480021 -169557137 + HAL1 LINE L1 1293 1496 -1011 2371 84 0 31 chr3 48480021 48480341 -169556817 - AluY SINE Alu -1 310 1 1101 228 71 102 chr3 48480341 48480663 -169556495 + HAL1 LINE L1 1496 1797 -710 430 285 78 41 chr3 48480961 48481231 -169555927 + HAL1 LINE L1 2228 2507 0 3088 148 85 66 chr3 48481664 48481751 -169555407 - LTR8A LTR ERV1 0 727 643 1989 108 61 17 chr3 48481751 48482048 -169555110 + AluSx SINE Alu 1 310 -2 3088 148 85 66 chr3 48482048 48482161 -169554997 - LTR8A LTR ERV1 -84 643 534 4594 148 50 43 chr3 48482161 48482372 -169554786 + MER4D LTR ERV1 1 209 -694 1733 156 10 16 chr3 48482372 48482680 -169554478 + AluJb SINE Alu 3 308 -4 4594 148 50 43 chr3 48482680 48483365 -169553793 + MER4D LTR ERV1 209 903 0 3088 148 85 66 chr3 48483365 48483843 -169553315 - LTR8A LTR ERV1 -193 534 35 275 313 150 25 chr3 48483874 48484034 -169553124 + MIR SINE MIR 26 205 -57 267 248 79 0 chr3 48484419 48484520 -169552638 + L1M4 LINE L1 5229 5337 -809 3718 208 31 49 chr3 48484665 48486281 -169550877 - L1MD1 LINE L1 -15 6227 4639 1761 269 69 5 chr3 48486280 48486904 -169550254 - L1MD1 LINE L1 -2486 3660 2997 * 794 159 7 51 chr3 48486905 48486989 -169550169 + AluJ SINE Alu 2 88 -224 4554 116 25 51 chr3 48486989 48487156 -169550002 - LTR8 LTR ERV1 0 691 521 1915 93 11 15 chr3 48487156 48487425 -169549733 - AluSq SINE Alu -9 304 37 4554 116 25 51 chr3 48487425 48487901 -169549257 - LTR8 LTR ERV1 -170 521 65 2314 112 3 0 chr3 48487901 48488206 -169548952 + AluSx SINE Alu 1 306 -6 4554 116 25 51 chr3 48488206 48488270 -169548888 - LTR8 LTR ERV1 -626 65 1 794 159 7 51 chr3 48488270 48488323 -169548835 + AluJ SINE Alu 88 133 -179 940 183 0 51 chr3 48488327 48488502 -169548656 + AluJ SINE Alu 137 302 0 328 197 13 13 chr3 48488503 48488579 -169548579 - L1MD1 LINE L1 -3141 3005 2930 342 61 0 0 chr3 48488582 48488631 -169548527 + (TG)n Simple_repeat Simple_repeat 2 50 0 921 210 150 99 chr3 48488642 48489176 -169547982 - MER34B LTR ERV1 0 565 5 271 132 0 0 chr3 48489178 48489216 -169547942 - MER34C LTR ERV1 -547 38 1 375 206 0 0 chr3 48489236 48489299 -169547859 + AluS SINE Alu 226 288 -14 193 237 26 105 chr3 48489708 48489776 -169547382 - MIR SINE MIR -41 221 164 2164 138 0 6 chr3 48489776 48490088 -169547070 - AluJb SINE Alu -2 310 1 193 237 26 105 chr3 48490088 48490133 -169547025 - MIR SINE MIR -98 164 117 390 246 269 0 chr3 48490134 48490268 -169546890 + MER5A DNA MER1_type 7 176 -13 228 329 0 0 chr3 48490276 48490346 -169546812 - MIR SINE MIR -83 125 56 1430 40 11 0 chr3 48490692 48490869 -169546289 - L1P LINE L1 -1471 4675 4497 10767 42 0 0 chr3 48490870 48492159 -169544999 + L1P LINE L1 3193 4481 -1665 1054 90 8 0 chr3 48492159 48492293 -169544865 - AluSq/x SINE Alu -177 135 1 516 296 50 45 chr3 48492296 48492674 -169544484 + L1ME4a LINE L1 5568 5947 -174 * 31672 117 11 69 chr3 48492670 48498278 -169538880 - L1P LINE L1 -856 5290 12 3819 201 16 29 chr3 48498289 48498582 -169538576 - L1 LINE L1 -3105 3041 2746 297 0 0 0 chr3 48498582 48498615 -169538543 + (TG)n Simple_repeat Simple_repeat 2 34 0 3819 201 16 29 chr3 48498615 48499007 -169538151 - L1 LINE L1 -3400 2746 2367 2456 90 0 0 chr3 48499007 48499318 -169537840 - AluY SINE Alu 0 311 1 3819 201 16 29 chr3 48499318 48499508 -169537650 - L1 LINE L1 -3779 2367 2176 662 226 15 8 chr3 48499513 48499646 -169537512 - AluJo SINE Alu -177 135 2 281 69 35 69 chr3 48499648 48499706 -169537452 - L1M2 LINE L1 -3958 2891 2836 398 151 58 12 chr3 48499965 48500051 -169537107 - L1MC2 LINE L1 -3 6341 6252 1262 169 32 75 chr3 48500051 48500359 -169536799 - MLT1B LTR MaLR -1 389 95 880 198 32 0 chr3 48500959 48501116 -169536042 + FAM SINE Alu 12 173 -12 238 191 0 0 chr3 48501218 48501265 -169535893 - L1M4 LINE L1 -1547 4599 4553 251 234 13 0 chr3 48501702 48501779 -169535379 + GA-rich Low_complexity Low_complexity 3 80 0 1260 166 26 156 chr3 48501907 48502161 -169534997 - MLT1B LTR MaLR -22 368 83 1965 146 0 10 chr3 48502161 48502469 -169534689 - AluSx SINE Alu 0 312 8 1260 166 26 156 chr3 48502469 48502508 -169534650 - MLT1B LTR MaLR -307 83 143 2312 100 0 28 chr3 48502508 48502829 -169534329 - AluSx SINE Alu 0 312 1 1260 166 26 156 chr3 48502829 48502957 -169534201 - MLT1B LTR MaLR -246 144 1 22 35 0 0 chr3 48502963 48502992 -169534166 + AT_rich Low_complexity Low_complexity 1 29 0 6220 107 21 58 chr3 48504109 48505116 -169532042 + Tigger4(Zombi) DNA MER2_type 1436 2405 -326 1997 119 58 0 chr3 48505131 48505443 -169531715 - Tigger4(Zombi) DNA MER2_type -867 1864 1535 310 109 0 0 chr3 48505441 48505487 -169531671 + Tigger4(Zombi) DNA MER2_type 2403 2448 -283 * 1122 101 0 0 chr3 48505487 48505626 -169531532 + AluSx SINE Alu 1 139 -173 394 345 0 0 chr3 48506291 48506459 -169530699 + (TGG)n Simple_repeat Simple_repeat 1 168 0 1115 160 0 0 chr3 48507365 48507534 -169529624 + AluSx SINE Alu 118 286 -24 3617 47 50 0 chr3 48507561 48507943 -169529215 + MLT2A1 LTR ERVL 1 407 -37 216 0 0 0 chr3 48507943 48507967 -169529191 + (TA)n Simple_repeat Simple_repeat 2 25 0 3617 47 50 0 chr3 48507967 48508007 -169529151 + MLT2A1 LTR ERVL 407 444 0 555 105 0 35 chr3 48508007 48508093 -169529065 + Tigger4(Zombi) DNA MER2_type 2553 2635 -96 208 78 118 0 chr3 48508275 48508326 -169528832 + (TTATA)n Simple_repeat Simple_repeat 2 58 0 237 196 98 0 chr3 48508919 48508970 -169528188 - MER2 DNA MER2_type -10 335 280 25 0 0 0 chr3 48508975 48509000 -169528158 + AT_rich Low_complexity Low_complexity 1 25 0 813 198 118 0 chr3 48509008 48509195 -169527963 - MER2 DNA MER2_type -136 209 1 25 0 0 0 chr3 48509606 48509631 -169527527 + AT_rich Low_complexity Low_complexity 1 25 0 1801 171 3 0 chr3 48509632 48509931 -169527227 - AluJb SINE Alu -7 305 6 286 213 0 38 chr3 48509937 48510017 -169527141 - L1M4 LINE L1 -3933 2213 2137 * 367 275 70 46 chr3 48510006 48510260 -169526898 + L1M4 LINE L1 1915 2180 -4216 311 0 0 25 chr3 48510260 48510300 -169526858 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 367 275 70 46 chr3 48510300 48510372 -169526786 + L1MEc LINE L1 2180 2249 -4147 1657 172 27 10 chr3 48510448 48510744 -169526414 - L1MB5 LINE L1 -2 6172 5872 253 313 12 24 chr3 48511197 48511280 -169525878 + L1MEd LINE L1 636 717 -5488 658 197 40 46 chr3 48511491 48511632 -169525526 + 7SLRNA srpRNA srpRNA 170 311 -9 1964 91 0 25 chr3 48511632 48511906 -169525252 + AluSc SINE Alu 36 302 -7 1957 155 3 16 chr3 48511957 48512273 -169524885 + AluSx SINE Alu 1 312 0 703 284 58 48 chr3 48512336 48512955 -169524203 + L1MEd LINE L1 1013 1637 -4759 2252 100 7 0 chr3 48512959 48513249 -169523909 + AluSg SINE Alu 2 293 -17 758 286 39 10 chr3 48513278 48513531 -169523627 - MIR SINE MIR -3 259 8 253 336 113 57 chr3 48513701 48513930 -169523228 - L2 LINE L2 -35 3237 2996 1971 143 10 0 chr3 48514512 48514812 -169522346 - AluSx SINE Alu -9 303 1 218 164 16 98 chr3 48515645 48515706 -169521452 - MIR3 SINE MIR -38 170 115 1615 116 4 13 chr3 48516416 48516649 -169520509 + AluSx SINE Alu 1 231 -81 2143 139 0 0 chr3 48517022 48517331 -169519827 - AluSx SINE Alu -3 309 1 503 179 94 8 chr3 48518047 48518164 -169518994 - L1MC4 LINE L1 -479 7563 7437 1204 199 85 14 chr3 48518197 48518478 -169518680 + LTR16C LTR ERVL 191 491 0 322 321 117 7 chr3 48519234 48519371 -169517787 - L2 LINE L2 -48 3224 3073 322 301 62 18 chr3 48519424 48519537 -169517621 + MER5A DNA MER1_type 69 186 -3 298 57 0 0 chr3 48520043 48520078 -169517080 + U2 snRNA snRNA 1 35 -153 2061 116 3 30 chr3 48520089 48520390 -169516768 + AluSx SINE Alu 1 293 -19 873 216 41 14 chr3 48520441 48520588 -169516570 - L1MC4 LINE L1 -131 7911 7755 1919 140 4 0 chr3 48520588 48520867 -169516291 - AluSx SINE Alu -15 297 18 873 216 41 14 chr3 48520867 48520937 -169516221 - L1MC4 LINE L1 -287 7755 7688 1499 205 99 20 chr3 48520950 48521355 -169515803 - L1MC4 LINE L1 -479 7563 7127 4684 134 34 40 chr3 48521846 48522731 -169514427 - L1M2 LINE L1 -3974 2875 1996 1835 151 10 16 chr3 48522731 48523035 -169514123 - AluJb SINE Alu -10 302 1 7113 138 17 5 chr3 48523047 48525199 -169511959 - L1MA2 LINE L1 0 6304 4131 524 57 0 0 chr3 48525199 48525269 -169511889 - L1M2 LINE L1 -4846 2003 1934 361 259 99 43 chr3 48525369 48525531 -169511627 + MER5B DNA MER1_type 6 176 -2 374 205 24 24 chr3 48525565 48525648 -169511510 + MER5A DNA MER1_type 36 118 -71 1754 77 32 5 chr3 48525757 48525977 -169511181 + MER30 DNA MER1_type 5 230 0 792 187 0 22 chr3 48526028 48526162 -169510996 + FLAM_C SINE Alu 1 131 -2 440 319 125 0 chr3 48526435 48526579 -169510579 - MER91A DNA MER1_type -34 162 1 2286 88 0 3 chr3 48526666 48526961 -169510197 + AluSg SINE Alu 1 294 -16 638 221 76 17 chr3 48528109 48528281 -169508877 - L1MB8 LINE L1 -84 6094 5913 2297 107 0 0 chr3 48528285 48528585 -169508573 + AluSx SINE Alu 1 300 -12 534 179 73 0 chr3 48528585 48528702 -169508456 - L1MB8 LINE L1 -608 5566 5440 685 200 0 0 chr3 48528726 48528836 -169508322 + AluSq/x SINE Alu 2 111 -201 864 79 18 0 chr3 48528967 48529081 -169508077 + AluSg/x SINE Alu 179 294 -16 664 216 164 21 chr3 48529752 48530090 -169507068 + MLT1C LTR MaLR 1 389 -1 180 229 82 0 chr3 48530102 48530163 -169506995 - MIR SINE MIR -59 203 138 1709 140 57 4 chr3 48530165 48530430 -169506728 + AluSx SINE Alu 1 279 -33 205 257 27 27 chr3 48530498 48530572 -169506586 - MIR SINE MIR -182 80 7 1930 138 32 0 chr3 48530622 48530905 -169506253 - AluSx SINE Alu -17 295 4 731 157 85 0 chr3 48531072 48531225 -169505933 - L1MA7 LINE L1 -2 6289 6124 727 170 0 15 chr3 48531225 48531360 -169505798 + LTR5 LTR ERVK 745 877 -92 1132 153 0 0 chr3 48532116 48532286 -169504872 + AluSg/x SINE Alu 132 301 -9 2365 96 0 3 chr3 48532286 48532587 -169504571 + AluSq SINE Alu 1 300 -13 444 310 10 65 chr3 48533042 48533242 -169503916 + MIR3 SINE MIR 9 197 -11 1382 214 140 37 chr3 48533652 48534110 -169503048 + MLT1D LTR MaLR 1 505 0 188 324 59 15 chr3 48534273 48534341 -169502817 - L2 LINE L2 -9 3263 3193 329 264 37 31 chr3 48534511 48534674 -169502484 + AluJb SINE Alu 164 302 0 291 172 81 11 chr3 48535575 48535662 -169501496 - L1ME3 LINE L1 -211 5951 5859 1584 166 63 25 chr3 48535663 48535947 -169501211 - AluJb SINE Alu -13 299 5 8275 43 22 8 chr3 48536079 48537072 -169500086 + LTR13 LTR ERVK 1 1007 0 706 288 88 39 chr3 48537081 48537144 -169500014 - L1M4 LINE L1 -1228 4918 4860 7507 84 4 9 chr3 48537144 48538118 -169499040 - LTR5 LTR ERVK 0 969 1 706 288 88 39 chr3 48538118 48538541 -169498617 - L1M4 LINE L1 -1286 4860 4408 465 286 45 0 chr3 48538894 48539027 -169498131 - L2 LINE L2 -7 3306 3168 412 297 73 23 chr3 48539903 48540203 -169496955 + L1MEd LINE L1 914 1228 -4891 650 284 171 18 chr3 48541045 48541079 -169496079 + L1ME3A LINE L1 5445 5472 -698 1493 127 0 9 chr3 48541079 48541300 -169495858 + AluSg/x SINE Alu 83 301 -9 650 284 171 18 chr3 48541300 48541709 -169495449 + L1ME3A LINE L1 5472 5956 -214 286 221 0 0 chr3 48541709 48541786 -169495372 + (TCTA)n Simple_repeat Simple_repeat 1 77 0 2127 142 0 0 chr3 48541786 48542075 -169495083 - AluSx SINE Alu -23 289 1 781 203 0 26 chr3 48542209 48542362 -169494796 + AluJo SINE Alu 2 150 -162 1972 263 66 13 chr3 48542432 48542964 -169494194 + MLT1G1 LTR MaLR 36 595 0 281 314 0 25 chr3 48542966 48543084 -169494074 + L1 LINE L1 4044 4158 -1988 21 0 0 0 chr3 48543254 48543275 -169493883 + AT_rich Low_complexity Low_complexity 1 21 0 207 261 113 49 chr3 48543732 48543874 -169493284 - L2 LINE L2 -1 3312 3162 432 279 23 16 chr3 48543961 48544090 -169493068 + MARNA DNA Mariner 377 506 -80 2496 91 0 0 chr3 48544107 48544414 -169492744 - AluSx SINE Alu -5 307 1 476 333 49 18 chr3 48544498 48544783 -169492375 + L1ME LINE L1 17 310 -5760 1545 208 7 10 chr3 48545401 48545704 -169491454 + AluJo SINE Alu 1 302 -10 198 236 0 18 chr3 48546767 48546822 -169490336 - MER5A DNA MER1_type -110 79 26 876 132 0 29 chr3 48546923 48547080 -169490078 + FLAM_C SINE Alu 1 133 0 1900 135 107 57 chr3 48548413 48548799 -169488359 + LTR46 LTR ERV1 1 366 -94 297 0 0 0 chr3 48548799 48548832 -169488326 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 486 49 0 0 chr3 48548835 48548896 -169488262 - L1PA5 LINE L1 -16 6138 6078 1900 135 107 57 chr3 48548896 48548943 -169488215 + LTR46 LTR ERV1 367 460 0 1651 169 55 10 chr3 48549998 48550288 -169486870 - AluSx SINE Alu -9 303 1 2218 108 3 0 chr3 48550292 48550587 -169486571 - AluSp SINE Alu -17 296 1 385 212 50 0 chr3 48550593 48550692 -169486466 + MER97b DNA MER1_type? 76 179 -874 271 205 24 0 chr3 48550884 48550967 -169486191 + L1MA8 LINE L1 6205 6289 -2 1955 118 62 7 chr3 48551370 48551659 -169485499 + AluSx SINE Alu 1 305 -7 2306 108 0 3 chr3 48551940 48552245 -169484913 - AluSg SINE Alu -6 304 1 2018 125 4 0 chr3 48554754 48555033 -169482125 + AluSx SINE Alu 1 280 -32 3047 172 178 41 chr3 48555378 48555684 -169481474 - L1MB7 LINE L1 0 6184 5921 923 182 6 6 chr3 48555684 48555843 -169481315 - FRAM SINE Alu -7 159 1 3047 172 178 41 chr3 48555843 48555876 -169481282 - L1MB7 LINE L1 -263 5921 5894 2181 137 0 0 chr3 48555876 48556175 -169480983 + AluSx SINE Alu 1 299 -13 3047 172 178 41 chr3 48556175 48556617 -169480541 - L1MB7 LINE L1 -290 5894 5295 255 226 16 0 chr3 48556745 48556807 -169480351 - L1ME LINE L1 -410 5752 5690 445 213 213 0 chr3 48556912 48557034 -169480124 - MLT2D LTR ERVL -57 357 210 294 29 0 0 chr3 48557288 48557323 -169479835 + (TCCC)n Simple_repeat Simple_repeat 4 38 0 476 103 0 0 chr3 48557362 48557430 -169479728 + (GGAA)n Simple_repeat Simple_repeat 3 70 0 22 70 0 0 chr3 48557592 48557635 -169479523 + AT_rich Low_complexity Low_complexity 1 43 0 331 316 23 17 chr3 48557746 48557920 -169479238 + L1M4 LINE L1 3025 3199 -2947 287 197 14 0 chr3 48558036 48558075 -169479083 + GA-rich Low_complexity Low_complexity 4 46 -29 1618 152 115 0 chr3 48558075 48558344 -169478814 + AluSx SINE Alu 1 300 -12 287 197 14 0 chr3 48558344 48558375 -169478783 + GA-rich Low_complexity Low_complexity 46 75 0 2123 104 11 0 chr3 48559517 48559818 -169477340 + AluSx SINE Alu 1 304 0 1688 176 7 0 chr3 48559825 48560098 -169477060 + AluJo SINE Alu 7 281 -31 2309 85 3 3 chr3 48560098 48560390 -169476768 - AluSg SINE Alu -16 294 2 2308 120 0 0 chr3 48560509 48560818 -169476340 - AluSx SINE Alu -3 309 1 199 164 16 98 chr3 48561528 48561589 -169475569 + MIR3 SINE MIR 115 170 -38 1983 143 10 0 chr3 48562422 48562722 -169474436 + AluSx SINE Alu 1 303 -9 183 336 113 57 chr3 48563304 48563533 -169473625 + L2 LINE L2 2996 3237 -35 692 284 39 4 chr3 48563727 48563956 -169473202 + MIR SINE MIR 23 259 -3 2316 106 0 0 chr3 48563985 48564278 -169472880 - AluSg SINE Alu -17 293 1 1057 101 0 0 chr3 48564936 48565074 -169472084 - AluSq/x SINE Alu -175 138 1 1093 152 85 0 chr3 48565237 48565461 -169471697 - L1MA7 LINE L1 -2 6289 6047 341 270 35 0 chr3 48565472 48565587 -169471571 - LTR16C LTR ERVL -97 394 276 234 222 16 32 chr3 48565666 48565729 -169471429 + MER114 LTR ERV 585 646 -2 29 0 0 0 chr3 48565754 48565783 -169471375 + AT_rich Low_complexity Low_complexity 1 29 0 2244 118 0 13 chr3 48566830 48567144 -169470014 + AluSx SINE Alu 1 310 -2 550 254 78 19 chr3 48567472 48567677 -169469481 + MIR SINE MIR 2 218 -44 2522 146 41 18 chr3 48567678 48567837 -169469321 - Tigger3(Golem) DNA MER2_type -1 3027 2873 2423 138 30 19 chr3 48567837 48568263 -169468895 - MSTB1 LTR MaLR 0 432 2 2522 146 41 18 chr3 48568263 48568542 -169468616 - Tigger3(Golem) DNA MER2_type -155 2873 2579 2252 108 3 0 chr3 48568544 48568839 -169468319 - AluSx SINE Alu -16 296 1 982 125 0 0 chr3 48568839 48568975 -169468183 - AluJb SINE Alu -176 136 1 1585 210 11 35 chr3 48569150 48569516 -169467642 + MLT1A1 LTR MaLR 1 357 -8 23 33 0 0 chr3 48569589 48569619 -169467539 + AT_rich Low_complexity Low_complexity 1 30 0 31 0 0 0 chr3 48569673 48569704 -169467454 + AT_rich Low_complexity Low_complexity 1 31 0 1680 142 75 4 chr3 48569705 48569959 -169467199 - AluJb SINE Alu -25 287 16 1575 187 3 31 chr3 48569961 48570255 -169466903 - AluJo SINE Alu -26 286 1 2841 216 54 33 chr3 48570256 48570841 -169466317 - L1ME1 LINE L1 -56 6110 5504 1985 128 0 0 chr3 48570841 48571107 -169466051 + AluSx SINE Alu 1 266 -46 2841 216 54 33 chr3 48571107 48571299 -169465859 - L1ME1 LINE L1 -662 5504 5317 662 129 20 0 chr3 48571367 48571468 -169465690 - AluSq/x SINE Alu -181 132 30 305 300 50 68 chr3 48571709 48571922 -169465236 - L1MEd LINE L1 -4891 1228 1022 1744 133 3 89 chr3 48571922 48572259 -169464899 - AluJb SINE Alu -4 308 1 305 300 50 68 chr3 48572259 48572385 -169464773 - L1MEd LINE L1 -5097 1022 895 1208 190 13 95 chr3 48572911 48573227 -169463931 + MLT1D LTR MaLR 1 290 -215 994 152 11 6 chr3 48573227 48573405 -169463753 - MER67C LTR ERV1 0 710 532 2421 95 0 0 chr3 48573464 48573770 -169463388 - AluSx SINE Alu -6 306 1 376 111 0 0 chr3 48573777 48573831 -169463327 - MER67C LTR ERV1 -208 502 449 2289 154 8 5 chr3 48573997 48574373 -169462785 - MER67C LTR ERV1 -263 447 71 333 0 0 0 chr3 48574413 48574450 -169462708 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1504 163 0 4 chr3 48574472 48574705 -169462453 - AluJo SINE Alu -80 232 1 1045 58 0 0 chr3 48575821 48575942 -169461216 - AluY SINE Alu -190 121 1 2039 172 20 0 chr3 48575942 48576504 -169460654 - L1P5 LINE L1 -673 5478 4905 402 251 64 53 chr3 48576508 48576695 -169460463 - L1MEd LINE L1 -4958 1161 973 567 295 99 39 chr3 48576839 48577115 -169460043 - MLT1H LTR MaLR -229 320 3 420 286 149 17 chr3 48577183 48577358 -169459800 - MLT1J LTR MaLR -313 198 1 574 234 139 0 chr3 48578672 48578830 -169458328 + MER5A DNA MER1_type 10 189 0 297 316 90 19 chr3 48579275 48579430 -169457728 + MER103 DNA DNA 1 166 0 2221 104 0 7 chr3 48579877 48580176 -169456982 + AluSg SINE Alu 1 297 -13 465 330 51 20 chr3 48580915 48581209 -169455949 + L1PA12 LINE L1 1 303 -7278 11349 227 37 20 chr3 48582351 48583687 -169453471 + L1P LINE L1 950 2263 -3883 233 57 29 0 chr3 48583687 48583722 -169453436 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 11349 227 37 20 chr3 48583722 48585375 -169451783 + L1P LINE L1 2263 3988 -2158 6541 104 9 3 chr3 48585375 48586599 -169450559 + L1PA15 LINE L1 4923 6159 -6 1921 94 101 4 chr3 48586609 48586886 -169450272 + AluY SINE Alu 6 309 -2 818 294 84 37 chr3 48586900 48587675 -169449483 + L1ME1 LINE L1 4969 5781 -389 255 266 0 46 chr3 48587685 48587794 -169449364 + L1ME1 LINE L1 5843 5946 -220 243 0 0 0 chr3 48589090 48589117 -169448041 + (CA)n Simple_repeat Simple_repeat 2 28 0 429 342 67 21 chr3 48589264 48589504 -169447654 + Charlie8 DNA MER1_type 30 280 -2137 2165 109 3 10 chr3 48590316 48590618 -169446540 - AluSx SINE Alu -12 300 1 1446 194 41 10 chr3 48591149 48591463 -169445695 + MER33 DNA MER1_type 1 324 0 246 226 128 0 chr3 48592006 48592108 -169445050 + AluY SINE Alu 169 283 -18 2517 109 36 46 chr3 48592156 48592570 -169444588 + L1PB3 LINE L1 5460 5869 -282 7513 61 11 0 chr3 48592570 48593882 -169443276 - L1PA6 LINE L1 0 6469 5155 25133 83 6 10 chr3 48593999 48597456 -169439702 - L1PA6 LINE L1 -1855 4606 1162 601 92 0 0 chr3 48597454 48597530 -169439628 - L1PA6 LINE L1 -6365 96 21 * 1866 150 26 13 chr3 48597530 48597836 -169439322 + L1PB3 LINE L1 5840 6149 -5 275 300 40 27 chr3 48597842 48597992 -169439166 + L1MEc LINE L1 1266 1417 -4979 952 215 20 10 chr3 48597992 48598192 -169438966 - MLT1A2 LTR MaLR 0 374 173 327 159 0 2 chr3 48598441 48598504 -169438654 - L1P LINE L1 -1584 4562 4501 11334 228 37 20 chr3 48600619 48601955 -169435203 + L1P LINE L1 950 2262 -3884 233 57 29 0 chr3 48601955 48601990 -169435168 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 11334 228 37 20 chr3 48601990 48603641 -169433517 + L1P LINE L1 2262 3988 -2158 6488 104 10 3 chr3 48603641 48604864 -169432294 + L1PA15 LINE L1 4923 6159 -6 2335 51 51 3 chr3 48604874 48605166 -169431992 + AluY SINE Alu 6 311 0 4176 165 8 26 chr3 48605829 48606558 -169430600 + L1MB2 LINE L1 5454 6169 -2 1047 206 23 16 chr3 48607286 48607543 -169429615 + Charlie1 DNA MER1_type 2488 2746 -15 822 159 32 0 chr3 48607554 48607680 -169429478 - AluJo SINE Alu -95 217 88 353 283 67 63 chr3 48608356 48608579 -169428579 + MIR SINE MIR 20 243 -19 456 285 149 5 chr3 48609327 48609541 -169427617 + MIR SINE MIR 6 250 -12 411 294 104 89 chr3 48609591 48609938 -169427220 - L2 LINE L2 -33 3239 2888 214 354 23 23 chr3 48610172 48610302 -169426856 - L2 LINE L2 -739 2575 2446 1394 260 88 10 chr3 48610361 48610772 -169426386 + MER70B LTR ERVL 4 446 -132 333 306 49 28 chr3 48611200 48611344 -169425814 - LTR16C LTR ERVL 0 491 345 226 275 88 12 chr3 48611615 48611695 -169425463 - MIR SINE MIR -157 105 20 277 307 100 29 chr3 48611891 48612031 -169425127 - L2 LINE L2 0 3272 3123 436 304 94 6 chr3 48612988 48613169 -169423989 - MIR SINE MIR -3 259 63 302 26 53 0 chr3 48613460 48613498 -169423660 - MSTB1 LTR MaLR 0 432 393 1305 131 194 24 chr3 48613500 48613752 -169423406 + AluJb SINE Alu 15 309 -3 1699 183 94 39 chr3 48613752 48613993 -169423165 - MSTB1 LTR MaLR -29 403 129 1792 143 29 14 chr3 48613993 48614300 -169422858 + AluJo SINE Alu 3 313 0 1699 183 94 39 chr3 48614300 48614437 -169422721 - MSTB1 LTR MaLR -303 129 1 270 300 0 0 chr3 48614991 48615081 -169422077 + T-rich Low_complexity Low_complexity 1 90 0 1834 142 3 50 chr3 48616053 48616383 -169420775 + AluSx SINE Alu 1 312 0 978 162 14 0 chr3 48617643 48617823 -169419335 - AluSg SINE Alu 0 314 133 2032 211 84 27 chr3 48617852 48618341 -169418817 + HsTC2 DNA Tc2 87 603 -1295 216 343 0 0 chr3 48618369 48618436 -169418722 + CT-rich Low_complexity Low_complexity 5 71 0 343 330 146 31 chr3 48618755 48619662 -169417496 - L1 LINE L1 -1127 5019 4009 326 232 84 21 chr3 48619702 48619797 -169417361 - L1ME3A LINE L1 -8 6162 6062 239 326 22 0 chr3 48619802 48619891 -169417267 - MLT1G1 LTR MaLR -1 554 464 603 293 118 31 chr3 48619962 48620283 -169416875 - MLT1G1 LTR MaLR -231 364 16 334 293 0 10 chr3 48620288 48620387 -169416771 - L1ME2 LINE L1 -97 6067 5970 313 85 17 17 chr3 48620400 48620459 -169416699 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 2197 104 0 0 chr3 48620461 48620748 -169416410 - AluSx SINE Alu -25 287 1 633 78 0 0 chr3 48620748 48620825 -169416333 - AluSg SINE Alu -176 134 58 984 76 0 0 chr3 48620825 48620956 -169416202 + MER41B LTR ERV1 505 635 0 1098 264 61 21 chr3 48620956 48621569 -169415589 + L1MEc LINE L1 1492 2134 -4262 857 162 114 41 chr3 48621569 48621953 -169415205 + LTR7 LTR ERV1 1 450 0 11448 21 1 0 chr3 48622007 48623359 -169413799 - L1PA2 LINE L1 -717 5438 4086 6744 20 1 0 chr3 48623359 48624131 -169413027 + L1PA2 LINE L1 5424 6196 0 957 182 110 100 chr3 48624132 48624673 -169412485 + LTR34 LTR ERV1 1 695 -4 504 247 13 40 chr3 48624673 48624823 -169412335 + L1MEc LINE L1 2194 2339 -4057 2902 78 98 5 chr3 48624823 48625233 -169411925 + LTR7 LTR ERV1 1 448 -2 16101 105 27 24 chr3 48625235 48628312 -169408846 + HERVH LTR ERV1 1 2986 -4727 848 152 41 0 chr3 48628307 48628452 -169408706 + HERVH LTR ERV1 3140 3290 -4423 * 3509 99 4 6 chr3 48628442 48628945 -169408213 + HERVH LTR ERV1 3492 3993 -3720 4371 140 6 3 chr3 48628947 48629604 -169407554 + HERVH LTR ERV1 4488 5146 -2567 1461 115 18 5 chr3 48629608 48629825 -169407333 + HERVH LTR ERV1 5600 5819 -1894 * 2401 101 53 13 chr3 48629823 48630200 -169406958 + HERVH LTR ERV1 7322 7713 0 2891 85 98 5 chr3 48630200 48630610 -169406548 + LTR7 LTR ERV1 1 448 -2 251 130 22 22 chr3 48630612 48630658 -169406500 + L1MEc LINE L1 2335 2380 -4016 2407 81 50 0 chr3 48630662 48630983 -169406175 + LTR9B LTR ERV1 223 559 -85 22 0 0 0 chr3 48630985 48631007 -169406151 + AT_rich Low_complexity Low_complexity 1 22 0 281 227 45 36 chr3 48631010 48631120 -169406038 + L1MEc LINE L1 2331 2441 -3774 198 271 47 71 chr3 48632301 48632386 -169404772 + MIR SINE MIR 109 191 -71 882 157 105 167 chr3 48634340 48634675 -169402483 + LTR28 LTR ERV1 1 971 -784 617 212 8 23 chr3 48634665 48634797 -169402361 + MER52A LTR ERV1 1096 1225 -530 * 2007 212 88 46 chr3 48636373 48636469 -169400689 - MLT1E2 LTR MaLR -9 617 527 1988 161 0 0 chr3 48636469 48636768 -169400390 + AluJb SINE Alu 1 299 -13 378 0 0 0 chr3 48636768 48636810 -169400348 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 1063 67 13 17 chr3 48636811 48637051 -169400107 + (GAAA)n Simple_repeat Simple_repeat 1 239 0 2007 212 88 46 chr3 48637051 48637540 -169399618 - MLT1E2 LTR MaLR -98 528 3 470 305 85 55 chr3 48637551 48637987 -169399171 - LTR16C LTR ERVL 0 491 43 699 250 70 37 chr3 48638602 48638905 -169398253 - MER54A LTR ERVL -234 561 113 244 288 110 34 chr3 48639040 48639158 -169398000 + L2 LINE L2 3123 3249 -23 180 77 0 0 chr3 48639475 48639501 -169397657 + (GA)n Simple_repeat Simple_repeat 2 27 0 347 231 33 22 chr3 48640180 48640271 -169396887 - L2 LINE L2 0 3272 3181 * 787 305 102 42 chr3 48640243 48640725 -169396433 - L2 LINE L2 -654 2660 2150 281 260 18 179 chr3 48640721 48640944 -169396214 - L2 LINE L2 -81 3191 3005 * 195 324 58 43 chr3 48641367 48641562 -169395596 + MIR SINE MIR 30 226 -36 1275 194 41 10 chr3 48642033 48642347 -169394811 - MER33 DNA MER1_type 0 324 1 2165 109 3 10 chr3 48642878 48643180 -169393978 + AluSx SINE Alu 1 300 -12 347 342 67 21 chr3 48643992 48644232 -169392926 - Charlie8 DNA MER1_type -2137 280 30 279 0 0 0 chr3 48644379 48644410 -169392748 + (TG)n Simple_repeat Simple_repeat 2 32 0 331 266 0 46 chr3 48645706 48645815 -169391343 - L1ME1 LINE L1 -220 5946 5843 788 289 76 46 chr3 48645825 48646614 -169390544 - L1ME1 LINE L1 -389 5781 5017 2021 115 46 26 chr3 48646614 48646919 -169390239 - AluSq SINE Alu -2 311 1 788 289 76 46 chr3 48646919 48647088 -169390070 - L1ME1 LINE L1 -1153 5017 4855 1906 127 81 32 chr3 48647088 48647435 -169389723 - THE1B LTR MaLR 0 364 1 788 289 76 46 chr3 48647435 48647614 -169389544 - L1ME1 LINE L1 -1315 4855 4617 898 314 58 16 chr3 48647776 48648410 -169388748 - L1ME1 LINE L1 -1980 4166 3506 355 268 78 28 chr3 48648427 48648606 -169388552 - HAL1 LINE L1 -155 2352 2165 499 221 18 0 chr3 48648630 48648743 -169388415 - MER46C DNA MER2_type -143 195 81 441 0 0 0 chr3 48649131 48649180 -169387978 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 443 169 0 0 chr3 48649180 48649251 -169387907 - FLAM SINE Alu -23 120 50 3393 150 35 2 chr3 48649256 48649850 -169387308 + MER41B LTR ERV1 22 635 0 280 241 0 0 chr3 48649850 48649902 -169387256 - AluJ/monomer SINE Alu -250 52 1 2204 94 31 0 chr3 48649990 48650278 -169386880 + AluSq SINE Alu 1 297 -16 1697 186 30 0 chr3 48650606 48650907 -169386251 + AluJo SINE Alu 1 310 -2 30356 114 7 53 chr3 48651100 48657543 -169379615 - L1PA7 LINE L1 -7 6147 12 401 337 12 12 chr3 48660446 48660609 -169376549 + MIR SINE MIR 30 192 -70 429 92 15 0 chr3 48661136 48661201 -169375957 - THE1C LTR MaLR 0 375 310 * 775 159 6 38 chr3 48661200 48661357 -169375801 - THE1C LTR MaLR -223 152 1 270 293 37 0 chr3 48661662 48661744 -169375414 - HAL1 LINE L1 -2422 85 1 402 325 158 10 chr3 48662143 48662346 -169374812 + MIR SINE MIR 23 255 -7 2146 124 3 7 chr3 48662462 48662769 -169374389 - AluSg SINE Alu -3 307 2 953 198 0 0 chr3 48662782 48662944 -169374214 - FRAM SINE Alu -1 165 4 2080 121 55 9 chr3 48663359 48663705 -169373453 - THE1B LTR MaLR 0 364 3 463 258 0 0 chr3 48663707 48663804 -169373354 + MIR SINE MIR 51 147 -115 198 267 0 0 chr3 48663920 48663965 -169373193 + MIR SINE MIR 148 192 -70 22 0 0 0 chr3 48666019 48666041 -169371117 + AT_rich Low_complexity Low_complexity 1 22 0 198 333 35 49 chr3 48666109 48666253 -169370905 - MIR3 SINE MIR -61 147 6 1862 228 25 47 chr3 48666679 48667163 -169369995 + MLT2B1 LTR ERVL 6 479 -41 306 73 0 0 chr3 48667163 48667204 -169369954 + (CA)n Simple_repeat Simple_repeat 1 41 0 1862 228 25 47 chr3 48667204 48667246 -169369912 + MLT2B1 LTR ERVL 479 520 0 516 328 51 3 chr3 48668215 48668450 -169368708 - MIR SINE MIR -12 250 5 471 113 0 0 chr3 48668936 48669007 -169368151 + (TA)n Simple_repeat Simple_repeat 1 71 0 994 120 133 0 chr3 48669135 48669285 -169367873 - AluSg SINE Alu -140 170 1 210 71 0 0 chr3 48669341 48669369 -169367789 + (T)n Simple_repeat Simple_repeat 1 28 0 540 272 111 0 chr3 48669370 48669587 -169367571 - L1MC/D LINE L1 -2032 5776 5536 422 281 106 51 chr3 48669669 48670082 -169367076 - L1MC/D LINE L1 -1581 4565 4175 1841 248 92 27 chr3 48670121 48670677 -169366481 - MLT1E LTR MaLR 0 593 2 1695 238 93 35 chr3 48670833 48671105 -169366053 + Charlie2 DNA MER1_type 1859 2114 -748 1406 190 92 11 chr3 48671105 48671389 -169365769 + AluJo SINE Alu 1 307 -5 1695 238 93 35 chr3 48671389 48671811 -169365347 + Charlie2 DNA MER1_type 2114 2614 -248 2179 66 40 4 chr3 48671811 48672106 -169365052 + AluY SINE Alu 1 305 0 1695 238 93 35 chr3 48672106 48672262 -169364896 + Charlie2 DNA MER1_type 2614 2760 -102 322 345 185 25 chr3 48672317 48672961 -169364197 - L2 LINE L2 -337 2977 2231 517 376 53 8 chr3 48673000 48673468 -169363690 - L1MC/D LINE L1 -2426 3720 3232 543 164 0 0 chr3 48673498 48673602 -169363556 + GA-rich Low_complexity Low_complexity 2 105 0 1829 168 115 3 chr3 48674002 48674384 -169362774 + MSTB LTR MaLR 2 426 0 230 271 93 7 chr3 48675025 48675165 -169361993 - L1MC/D LINE L1 -3850 2296 2145 495 305 107 0 chr3 48676728 48676925 -169360233 + MIR SINE MIR 36 253 -9 184 226 118 65 chr3 48677341 48677434 -169359724 + MIR SINE MIR 41 138 -124 330 286 61 68 chr3 48680016 48680163 -169356995 - L1MC4 LINE L1 -1137 6905 6760 2352 79 0 58 chr3 48680705 48681035 -169356123 + AluSq SINE Alu 1 311 -2 354 264 0 0 chr3 48681242 48681314 -169355844 - MER63A DNA MER1_type 0 210 139 2289 100 3 3 chr3 48681387 48681688 -169355470 + AluSq SINE Alu 3 303 -10 466 196 72 0 chr3 48681696 48681793 -169355365 - MER63A DNA MER1_type 0 114 11 465 285 91 63 chr3 48683552 48683948 -169353210 - L1ME3A LINE L1 -312 5858 5452 785 279 50 23 chr3 48683962 48684263 -169352895 + L1MDa LINE L1 1589 1897 -4643 372 270 13 0 chr3 48684564 48684676 -169352482 - MIR SINE MIR -75 133 20 737 278 6 10 chr3 48684895 48685168 -169351990 + L1M4 LINE L1 4477 4748 -1398 376 246 0 45 chr3 48686043 48686153 -169351005 - L2 LINE L2 -86 3227 3123 261 320 16 8 chr3 48686257 48686379 -169350779 - MIR SINE MIR -136 126 4 1952 137 10 16 chr3 48687211 48687517 -169349641 + AluSx SINE Alu 1 304 -8 317 93 19 0 chr3 48687830 48687884 -169349274 + (TC)n Simple_repeat Simple_repeat 2 56 0 348 24 0 0 chr3 48687884 48687925 -169349233 + (CA)n Simple_repeat Simple_repeat 1 41 0 24 32 0 0 chr3 48691771 48691802 -169345356 + AT_rich Low_complexity Low_complexity 1 31 0 457 305 149 23 chr3 48692451 48692799 -169344359 - L2 LINE L2 0 3313 2922 372 43 0 0 chr3 48693440 48693486 -169343672 + (CA)n Simple_repeat Simple_repeat 2 47 0 257 290 130 58 chr3 48696407 48696545 -169340613 - MIR SINE MIR -64 198 51 3197 199 70 101 chr3 48697653 48698578 -169338580 + L1ME1 LINE L1 4160 5111 -1055 286 236 0 79 chr3 48698578 48698667 -169338491 - LTR16C LTR ERVL -182 309 228 3197 199 70 101 chr3 48698667 48699327 -169337831 + L1ME1 LINE L1 5111 5790 -376 216 250 0 0 chr3 48699328 48699372 -169337786 + (CA)n Simple_repeat Simple_repeat 2 45 0 256 213 0 21 chr3 48699373 48699467 -169337691 + (TA)n Simple_repeat Simple_repeat 1 92 0 248 260 52 21 chr3 48699491 48699587 -169337571 - L2 LINE L2 -2178 1136 1038 2384 91 3 0 chr3 48699591 48699888 -169337270 + AluSg SINE Alu 1 298 -12 1184 213 118 17 chr3 48699888 48700184 -169336974 + L1ME1 LINE L1 5835 6160 -6 426 361 51 13 chr3 48700362 48700675 -169336483 - L2 LINE L2 -2118 1196 872 205 233 0 0 chr3 48700938 48700981 -169336177 + L2 LINE L2 1516 1558 -1756 1530 252 66 24 chr3 48701616 48702073 -169335085 + LTR16C LTR ERVL 4 479 -12 188 310 35 35 chr3 48702076 48702218 -169334940 - L2 LINE L2 -1426 1888 1747 306 0 0 0 chr3 48704760 48704794 -169332364 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 580 125 10 42 chr3 48704803 48704899 -169332259 + L1MC1 LINE L1 6228 6320 -13 220 346 13 0 chr3 48705049 48705127 -169332031 + L2 LINE L2 3235 3313 0 724 226 120 15 chr3 48705403 48705745 -169331413 - LTR33A LTR ERVL -21 502 297 34 0 0 0 chr3 48706754 48706788 -169330370 + AT_rich Low_complexity Low_complexity 1 34 0 827 229 57 41 chr3 48706796 48707041 -169330117 + L1ME3 LINE L1 5785 6033 -129 308 297 175 25 chr3 48707675 48708029 -169329129 + L2 LINE L2 1689 2095 -1219 183 316 59 59 chr3 48708123 48708259 -169328899 - L2 LINE L2 -1 3271 3136 184 286 143 10 chr3 48708308 48708406 -169328752 - L2 LINE L2 -19 3294 3184 1889 102 0 0 chr3 48709860 48710116 -169327042 + AluSg SINE Alu 51 306 -4 2193 179 38 10 chr3 48710336 48710728 -169326430 + MER57A LTR ERV1 1 403 0 227 299 41 21 chr3 48710828 48710925 -169326233 - MIR SINE MIR -136 126 28 2097 105 16 32 chr3 48711360 48711499 -169325659 + AluSx SINE Alu 2 142 -170 2210 110 3 0 chr3 48711499 48711800 -169325358 + AluSp SINE Alu 1 302 -11 2097 105 16 32 chr3 48711800 48711962 -169325196 + AluSx SINE Alu 142 300 -12 2514 62 3 3 chr3 48711962 48712271 -169324887 + AluY SINE Alu 1 309 -2 2097 105 16 32 chr3 48712271 48712282 -169324876 + AluSx SINE Alu 300 310 -2 254 241 196 54 chr3 48712402 48712682 -169324476 - L1M4 LINE L1 -2730 3416 3177 1781 117 106 3 chr3 48712682 48712964 -169324194 - AluJb SINE Alu -1 311 1 254 241 196 54 chr3 48712964 48713234 -169323924 - L1M4 LINE L1 -2969 3177 2788 563 246 67 76 chr3 48713396 48713620 -169323538 + MLT1J LTR MaLR 287 508 -3 424 236 153 0 chr3 48714127 48714284 -169322874 - MIR SINE MIR -8 254 74 245 261 43 33 chr3 48714786 48714878 -169322280 + L2 LINE L2 3178 3270 -2 597 269 19 0 chr3 48716975 48717131 -169320027 - MIR SINE MIR 0 262 104 2254 117 0 0 chr3 48717707 48718005 -169319153 + AluSx SINE Alu 1 298 -14 563 319 190 23 chr3 48719164 48719931 -169317227 - L2 LINE L2 -70 3243 2343 284 177 65 0 chr3 48719929 48719991 -169317167 - L2 LINE L2 0 3313 3248 * 365 338 103 33 chr3 48720087 48720418 -169316740 - L2 LINE L2 -797 2517 2164 468 305 73 47 chr3 48720420 48720748 -169316410 + L1MC/D LINE L1 4358 4707 -1439 2500 77 3 0 chr3 48720748 48721058 -169316100 + AluY SINE Alu 1 311 0 468 305 73 47 chr3 48721058 48721277 -169315881 + L1MC/D LINE L1 4707 4919 -1227 579 267 52 27 chr3 48721302 48721327 -169315831 + L1MC/D LINE L1 5143 5166 -1122 1595 150 51 67 chr3 48721327 48721641 -169315517 + AluJo SINE Alu 1 309 -3 579 267 52 27 chr3 48721641 48722003 -169315155 + L1MC/D LINE L1 5166 5540 -748 28 0 0 0 chr3 48722110 48722138 -169315020 + AT_rich Low_complexity Low_complexity 1 28 0 539 238 175 0 chr3 48722241 48722401 -169314757 - MIR SINE MIR -36 226 39 328 340 78 56 chr3 48724324 48724556 -169312602 + L2 LINE L2 2951 3187 -85 347 284 92 96 chr3 48725333 48725790 -169311368 - L2 LINE L2 0 3272 2818 2427 76 0 3 chr3 48725898 48726200 -169310958 - AluY SINE Alu -10 301 1 953 313 261 34 chr3 48726287 48728136 -169309022 - L2 LINE L2 -744 2570 302 2369 95 7 0 chr3 48729441 48729747 -169307411 + AluSg SINE Alu 1 308 -2 398 338 68 29 chr3 48729764 48730072 -169307086 + L1MEc LINE L1 55 374 -6022 7831 123 45 8 chr3 48730084 48731270 -169305888 - Tigger3b DNA MER2_type 0 1231 1 315 200 112 72 chr3 48731579 48731704 -169305454 + L1MEc LINE L1 764 893 -5503 323 212 16 138 chr3 48731787 48731976 -169305182 + L1MC4a LINE L1 6149 6314 -1494 4445 228 47 34 chr3 48731989 48732239 -169304919 + L1MC4a LINE L1 6081 6326 -737 2544 144 65 5 chr3 48732239 48732642 -169304516 + MSTA LTR MaLR 2 428 0 4445 228 47 34 chr3 48732642 48732954 -169304204 + L1MC4a LINE L1 6326 6632 -431 216 67 0 0 chr3 48732954 48732984 -169304174 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 4445 228 47 34 chr3 48732984 48733714 -169303444 + L1MC4a LINE L1 6632 7001 -62 535 203 98 8 chr3 48733828 48733951 -169303207 + MER106B DNA MER1_type 901 1034 -25 759 195 51 3 chr3 48733977 48734225 -169302933 + MER7A DNA MER2_type 2 336 0 2452 168 36 66 chr3 48734802 48735361 -169301797 + MER74A LTR ERVL 16 557 -1 1742 170 0 45 chr3 48735613 48735925 -169301233 - AluJb SINE Alu -14 298 1 573 243 179 82 chr3 48737050 48737141 -169300017 + Charlie7 DNA MER1_type 1 82 -2530 2156 108 0 10 chr3 48737141 48737437 -169299721 + AluSc SINE Alu 2 294 -15 573 243 179 82 chr3 48737437 48737810 -169299348 + Charlie7 DNA MER1_type 82 510 -2102 437 230 81 54 chr3 48737860 48738082 -169299076 + Charlie7 DNA MER1_type 2334 2561 -51 385 213 120 28 chr3 48738082 48738190 -169298968 + MIR SINE MIR 68 185 -77 236 143 16 32 chr3 48738253 48738316 -169298842 - L1MC4 LINE L1 -474 7568 7507 817 229 221 7 chr3 48738865 48739136 -169298022 + L1MC4 LINE L1 7460 7788 -254 332 185 0 37 chr3 48739138 48739246 -169297912 + (TTAAA)n Simple_repeat Simple_repeat 4 107 0 309 326 0 0 chr3 48739246 48739338 -169297820 - L1MC4 LINE L1 -1337 6705 6614 236 229 0 83 chr3 48739363 48739459 -169297699 + L1MC4 LINE L1 6615 6702 -1340 272 241 72 0 chr3 48739471 48739554 -169297604 + L1MC4 LINE L1 6615 6703 -1339 226 217 0 17 chr3 48739509 48739569 -169297589 - L1MCa LINE L1 -4362 2064 2006 * 707 219 3 3 chr3 48739576 48739899 -169297259 + (TA)n Simple_repeat Simple_repeat 1 323 0 430 235 70 0 chr3 48739926 48740041 -169297117 + L1MC4 LINE L1 7914 8036 -6 22 56 0 0 chr3 48740451 48740487 -169296671 + AT_rich Low_complexity Low_complexity 1 36 0 284 278 30 18 chr3 48740989 48741158 -169296000 + A-rich Low_complexity Low_complexity 2 172 0 2084 119 7 3 chr3 48742150 48742453 -169294705 - AluSx SINE Alu -8 304 1 313 270 11 0 chr3 48742634 48742723 -169294435 + MIR SINE MIR 144 233 -29 1833 164 7 121 chr3 48743278 48743365 -169293793 + MLT1B LTR MaLR 1 96 -294 1633 119 88 64 chr3 48743365 48743660 -169293498 + AluSg SINE Alu 1 302 -8 1833 164 7 121 chr3 48743660 48744011 -169293147 + MLT1B LTR MaLR 96 389 -1 396 267 62 40 chr3 48744044 48744220 -169292938 - HAL1 LINE L1 0 2507 2328 1926 284 70 73 chr3 48744335 48745860 -169291298 - HAL1 LINE L1 -350 2157 637 703 181 16 80 chr3 48746417 48746582 -169290576 - L1MB7 LINE L1 0 6184 6031 1798 171 0 10 chr3 48746582 48746887 -169290271 + AluSx SINE Alu 1 302 -10 703 181 16 80 chr3 48746887 48746909 -169290249 - L1MB7 LINE L1 -153 6031 6009 938 119 16 0 chr3 48747298 48747424 -169289734 + FLAM_C SINE Alu 2 129 -4 1691 89 8 25 chr3 48748661 48748757 -169288401 + AluSq SINE Alu 1 97 -216 2562 116 38 35 chr3 48748757 48748833 -169288325 - MER48 LTR ERV1 0 398 324 2288 89 0 0 chr3 48748833 48749125 -169288033 - AluY SINE Alu -7 304 13 2562 116 38 35 chr3 48749125 48749445 -169287713 - MER48 LTR ERV1 -74 324 1 1691 89 8 25 chr3 48749445 48749584 -169287574 + AluSq SINE Alu 97 232 -81 2126 116 140 60 chr3 48749585 48750000 -169287158 + LTR12 LTR ERV1 1 448 -266 311 177 240 10 chr3 48750001 48750097 -169287061 + MER119 DNA MER1_type 415 532 -51 22 0 0 0 chr3 48750176 48750198 -169286960 + AT_rich Low_complexity Low_complexity 1 22 0 1944 125 6 35 chr3 48750228 48750539 -169286619 - AluSx SINE Alu -10 302 1 521 275 70 52 chr3 48750970 48751257 -169285901 + MLT1J LTR MaLR 220 511 0 1022 166 35 50 chr3 48751552 48751751 -169285407 - MLT1D LTR MaLR 0 505 310 1641 169 50 20 chr3 48751823 48752124 -169285034 + AluJo SINE Alu 1 310 -2 1492 163 0 4 chr3 48753276 48753509 -169283649 + AluJo SINE Alu 1 232 -80 333 0 0 0 chr3 48753531 48753568 -169283590 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 2292 154 8 5 chr3 48753608 48753984 -169283174 + MER67C LTR ERV1 71 447 -263 375 111 0 0 chr3 48754150 48754204 -169282954 + MER67C LTR ERV1 449 502 -208 2322 95 3 3 chr3 48754211 48754517 -169282641 + AluSx SINE Alu 1 306 -6 1009 152 11 6 chr3 48754576 48754754 -169282404 + MER67C LTR ERV1 532 710 0 1209 190 13 95 chr3 48754754 48755070 -169282088 - MLT1D LTR MaLR -215 290 1 327 300 50 68 chr3 48755596 48755722 -169281436 + L1MEd LINE L1 895 1022 -5097 1726 133 3 89 chr3 48755722 48756059 -169281099 + AluJb SINE Alu 1 308 -4 327 300 50 68 chr3 48756059 48756272 -169280886 + L1MEd LINE L1 1022 1228 -4891 703 139 0 0 chr3 48756513 48756614 -169280544 + AluSq/x SINE Alu 30 130 -183 2882 216 54 33 chr3 48756682 48756874 -169280284 + L1ME1 LINE L1 5317 5504 -662 1958 128 0 0 chr3 48756874 48757140 -169280018 - AluSx SINE Alu -46 266 1 2882 216 54 33 chr3 48757140 48757725 -169279433 + L1ME1 LINE L1 5504 6110 -56 1561 187 3 31 chr3 48757726 48758020 -169279138 + AluJo SINE Alu 1 286 -26 1667 142 75 4 chr3 48758022 48758276 -169278882 + AluJb SINE Alu 16 287 -25 31 0 0 0 chr3 48758277 48758308 -169278850 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr3 48758362 48758392 -169278766 + AT_rich Low_complexity Low_complexity 1 30 0 1579 210 11 35 chr3 48758465 48758831 -169278327 - MLT1A1 LTR MaLR -8 357 1 978 125 0 0 chr3 48759006 48759142 -169278016 + AluJb SINE Alu 1 136 -176 1939 124 50 0 chr3 48759142 48759424 -169277734 + AluSx SINE Alu 1 296 -16 1825 164 13 10 chr3 48759438 48759748 -169277410 + AluSx SINE Alu 1 311 -1 2058 127 10 0 chr3 48759909 48760201 -169276957 + AluSx SINE Alu 1 295 -17 233 130 0 109 chr3 48760241 48760287 -169276871 - MER5B DNA MER1_type -2 176 136 3362 179 67 35 chr3 48760288 48760954 -169276204 + LTR48 LTR ERV1 1 695 -92 2319 89 3 0 chr3 48760954 48761247 -169275911 + AluSp SINE Alu 1 294 -19 3362 179 67 35 chr3 48761247 48761325 -169275833 + LTR48 LTR ERV1 695 769 -18 480 183 191 0 chr3 48761333 48761448 -169275710 - MER5B DNA MER1_type -41 137 1 1881 84 69 11 chr3 48761937 48762212 -169274946 - AluSx SINE Alu -17 295 5 1917 151 7 3 chr3 48762228 48762527 -169274631 - AluJo SINE Alu -11 301 2 180 0 0 0 chr3 48762572 48762592 -169274566 + (A)n Simple_repeat Simple_repeat 1 20 0 256 33 0 0 chr3 48764166 48764196 -169272962 - LTR6A LTR ERV1 -462 102 73 2010 95 51 3 chr3 48765324 48765618 -169271540 + AluY SINE Alu 1 308 -3 1929 146 6 22 chr3 48765691 48766006 -169271152 - AluSx SINE Alu -2 310 1 799 217 6 19 chr3 48766191 48766348 -169270810 + FRAM SINE Alu 1 152 -24 1211 205 25 18 chr3 48766358 48766636 -169270522 + AluJb SINE Alu 11 290 -22 5826 112 15 10 chr3 48767183 48768102 -169269056 - L1PA11 LINE L1 0 6174 5358 * 14406 206 26 37 chr3 48768100 48772198 -169264960 - L1P3 LINE L1 -2381 4080 12 3694 152 58 30 chr3 48772378 48772759 -169264399 - L1MA4 LINE L1 -101 6199 5830 324 67 50 0 chr3 48772759 48772819 -169264339 + (TA)n Simple_repeat Simple_repeat 2 64 0 216 0 0 0 chr3 48772818 48772842 -169264316 + (CA)n Simple_repeat Simple_repeat 2 25 0 * 3694 152 58 30 chr3 48772819 48773030 -169264128 - L1MA4 LINE L1 -470 5830 5604 2322 103 0 6 chr3 48773030 48773341 -169263817 - AluSx SINE Alu -3 309 1 3694 152 58 30 chr3 48773341 48773474 -169263684 - L1MA4 LINE L1 -696 5604 5476 292 96 5 106 chr3 48775218 48775296 -169261862 - L1MA4 LINE L1 -818 5482 5413 817 148 0 59 chr3 48775296 48775465 -169261693 - AluSg/x SINE Alu 0 312 154 550 140 0 32 chr3 48775603 48775696 -169261462 - AluS SINE Alu -2 309 220 672 205 0 0 chr3 48775696 48775813 -169261345 + MER65A-int LTR ERV1 4755 4871 0 3050 109 9 39 chr3 48775813 48776270 -169260888 + MER65A LTR ERV1 1 443 -2 228 35 0 0 chr3 48776313 48776342 -169260816 + (GA)n Simple_repeat Simple_repeat 2 30 0 1778 126 0 4 chr3 48776566 48776821 -169260337 - AluSx SINE Alu -2 310 57 254 100 0 0 chr3 48776835 48776875 -169260283 - L1ME2 LINE L1 -2 6162 6123 247 132 0 0 chr3 48776842 48776880 -169260278 - L1ME1 LINE L1 -8 6158 6121 * 2755 63 16 34 chr3 48777285 48777318 -169259840 - LTR15 LTR ERV1 -16 477 445 2009 93 41 0 chr3 48777318 48777621 -169259537 - AluY SINE Alu 0 314 1 2755 63 16 34 chr3 48777621 48777967 -169259191 - LTR15 LTR ERV1 -48 445 104 7018 39 12 0 chr3 48777967 48778811 -169258347 - L1PA4 LINE L1 -5 6150 5297 584 184 0 9 chr3 48778811 48778925 -169258233 - LTR15 LTR ERV1 -380 113 1 25222 153 8 7 chr3 48778925 48782902 -169254256 - HERV15 LTR ERV1 -1 8734 4753 2587 68 3 0 chr3 48782909 48783217 -169253941 - AluY SINE Alu -2 309 1 1722 253 80 39 chr3 48783225 48783762 -169253396 - L1M4b LINE L1 -5411 1448 890 2725 189 46 52 chr3 48783762 48784390 -169252768 - LTR19C LTR ERV1 0 779 156 2231 86 0 10 chr3 48784378 48784669 -169252489 - LTR8 LTR ERV1 -403 288 1 * 869 284 97 10 chr3 48784669 48784958 -169252200 - L1M4b LINE L1 -6545 314 1 501 245 13 7 chr3 48785609 48785760 -169251398 - L1ME1 LINE L1 -208 5962 5811 1707 128 0 8 chr3 48785779 48786014 -169251144 - AluSx SINE Alu -79 233 1 777 183 0 8 chr3 48786016 48786147 -169251011 - AluJo/FLAM SINE Alu -172 130 1 1472 265 28 22 chr3 48786215 48786273 -169250885 - L1ME1 LINE L1 -400 5770 5714 2093 175 25 60 chr3 48786273 48786752 -169250406 - MLT1C LTR MaLR -3 464 3 1472 265 28 22 chr3 48786752 48787203 -169249955 - L1ME1 LINE L1 -456 5714 5258 1047 282 80 3 chr3 48787214 48787540 -169249618 + LTR40a LTR ERVL 4 354 -165 312 48 0 0 chr3 48788232 48788274 -169248884 + (CA)n Simple_repeat Simple_repeat 2 43 0 1025 260 115 15 chr3 48788312 48788581 -169248577 - LTR16A LTR ERVL 0 450 155 23 33 0 0 chr3 48788904 48788934 -169248224 + AT_rich Low_complexity Low_complexity 1 30 0 2352 98 0 0 chr3 48788948 48789244 -169247914 - AluSg SINE Alu -6 304 9 2537 74 0 3 chr3 48789580 48789892 -169247266 - AluY SINE Alu 0 311 1 502 232 83 43 chr3 48789894 48790148 -169247010 - L1MC5 LINE L1 -167 7794 7531 1745 157 3 31 chr3 48790160 48790454 -169246704 - AluJo SINE Alu -25 287 2 1882 168 0 3 chr3 48790475 48790767 -169246391 + AluJb SINE Alu 1 291 -21 205 270 27 14 chr3 48791208 48791282 -169245876 - L2 LINE L2 -15 3257 3183 257 136 119 0 chr3 48792157 48792216 -169244942 + MER5B DNA MER1_type 112 177 -1 1440 139 102 0 chr3 48793650 48793894 -169243264 - AluSx SINE Alu -30 282 14 1459 182 7 25 chr3 48793994 48794274 -169242884 + AluJo SINE Alu 13 287 -25 308 229 131 16 chr3 48794354 48794476 -169242682 - MER69 DNA AcHobo -2390 136 1 384 308 60 16 chr3 48846153 48846335 -169190823 - HERVL LTR ERVL -1099 4555 4366 332 349 24 6 chr3 48847071 48847240 -169189918 + L2 LINE L2 2680 2851 -463 241 247 123 0 chr3 48847284 48847365 -169189793 - LTR33 LTR ERVL -428 93 3 276 30 0 0 chr3 48848378 48848411 -169188747 + (A)n Simple_repeat Simple_repeat 1 33 0 388 323 102 31 chr3 48848524 48848750 -169188408 - L1MEc LINE L1 -4364 2032 1791 4947 91 5 42 chr3 48848763 48849555 -169187603 - L1PB2 LINE L1 -4 6147 5385 7523 33 0 1 chr3 48849555 48849566 -169187592 - L1PA3 LINE L1 0 6155 6145 210 37 0 0 chr3 48849566 48849593 -169187565 + (TTTAA)n Simple_repeat Simple_repeat 4 30 0 7523 33 0 1 chr3 48849593 48851094 -169186064 - L1PA3 LINE L1 -10 6145 4646 531 80 91 0 chr3 48851207 48851689 -169185469 + (TA)n Simple_repeat Simple_repeat 1 525 0 195 42 0 0 chr3 48851819 48851843 -169185315 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 1536 229 97 2 chr3 48852256 48852740 -169184418 + L1ME1 LINE L1 5555 6084 -82 303 189 189 11 chr3 48852711 48852806 -169184352 + L1MA9 LINE L1 6201 6312 0 * 2325 78 10 0 chr3 48853921 48854214 -169182944 - AluY SINE Alu -15 296 1 362 224 12 12 chr3 48854688 48854773 -169182385 - MIR SINE MIR -1 261 177 190 354 0 37 chr3 48856389 48856471 -169180687 + MER5A DNA MER1_type 110 188 -1 355 183 126 69 chr3 48857737 48857851 -169179307 - LTR16A1 LTR ERVL 0 457 328 2473 143 60 2 chr3 48857851 48858250 -169178908 - MSTB LTR MaLR 0 426 5 355 183 126 69 chr3 48858250 48858310 -169178848 - LTR16A1 LTR ERVL -129 328 273 2567 56 0 0 chr3 48859961 48860267 -169176891 - AluY SINE Alu -5 306 1 999 121 53 0 chr3 48860646 48860836 -169176322 - L1MA6 LINE L1 0 6300 6101 3852 39 2 0 chr3 48860844 48861304 -169175854 - L1PA5 LINE L1 -7 6147 5687 2331 35 0 0 chr3 48861304 48861588 -169175570 + L1PA5 LINE L1 5395 5678 -476 1092 127 10 15 chr3 48861583 48861780 -169175378 - L1MA7 LINE L1 -182 6109 5914 * 3409 162 32 1 chr3 48861898 48862825 -169174333 - L1MA7 LINE L1 -395 5896 4942 1004 162 10 0 chr3 48862819 48863016 -169174142 + L1 LINE L1 3896 4094 -2052 * 604 38 0 0 chr3 48863016 48863089 -169174069 + L1PA3 LINE L1 6074 6152 -3 21 0 0 0 chr3 48863089 48863110 -169174048 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr3 48863146 48863172 -169173986 + AT_rich Low_complexity Low_complexity 1 26 0 675 156 8 0 chr3 48863211 48863333 -169173825 + L1 LINE L1 4077 4199 -1947 207 200 0 0 chr3 48863421 48863456 -169173702 + MER91 DNA MER1_type 105 139 -1 * 1036 273 98 12 chr3 48863456 48863858 -169173300 - L2 LINE L2 -272 3041 2606 345 265 71 35 chr3 48863859 48864029 -169173129 - L2 LINE L2 -51 3262 3087 1057 296 58 26 chr3 48864226 48864827 -169172331 + L2 LINE L2 2690 3313 0 21 36 0 0 chr3 48866017 48866045 -169171113 + AT_rich Low_complexity Low_complexity 1 28 0 5422 58 24 6 chr3 48866988 48868116 -169169042 - SVA Other Other -955 1386 7 525 157 12 0 chr3 48869022 48869105 -169168053 - AluS SINE Alu -216 97 14 2041 132 4 0 chr3 48870087 48870368 -169166790 - AluSx SINE Alu -25 287 6 1383 271 48 19 chr3 48870381 48870923 -169166235 - L1PBa LINE L1 -6300 563 6 1655 139 42 3 chr3 48870937 48871224 -169165934 - MER47A DNA MER2_type -68 298 1 433 319 43 53 chr3 48871268 48871325 -169165833 - LTR16C LTR ERVL -57 434 378 360 0 0 0 chr3 48871325 48871365 -169165793 + (TCTCCC)n Simple_repeat Simple_repeat 5 44 0 9076 74 41 45 chr3 48871365 48872745 -169164413 + SVA Other Other 13 1386 0 433 319 43 53 chr3 48872745 48872968 -169164190 - LTR16C LTR ERVL -111 380 156 453 261 99 9 chr3 48873016 48873227 -169163931 + L1MB8 LINE L1 4608 4837 -1309 1334 189 16 4 chr3 48873227 48873475 -169163683 - MLT1A1 LTR MaLR 0 365 115 284 314 200 14 chr3 48873550 48873690 -169163468 + L2 LINE L2 3107 3272 0 1250 184 27 2 chr3 48874063 48874463 -169162695 + L1MB8 LINE L1 4931 5400 -746 8357 43 1 8 chr3 48874463 48875522 -169161636 + HERV17 LTR ERV1 4969 6019 -2607 285 51 0 0 chr3 48875515 48875554 -169161604 + HERV17 LTR ERV1 7510 7548 -1078 * 2389 45 0 0 chr3 48875544 48875835 -169161323 + HERV17 LTR ERV1 8335 8625 -1 2269 50 43 34 chr3 48875836 48876159 -169160999 + LTR17 LTR ERV1 1 326 -454 3438 189 38 12 chr3 48876174 48876948 -169160210 + L1MB8 LINE L1 5385 6178 0 2726 209 62 26 chr3 48877178 48877405 -169159753 + L1ME1 LINE L1 5378 5595 -571 2262 110 3 0 chr3 48877405 48877704 -169159454 + AluSx SINE Alu 1 300 -12 2726 209 62 26 chr3 48877704 48878235 -169158923 + L1ME1 LINE L1 5595 6163 -3 22 0 0 0 chr3 48878526 48878548 -169158610 + AT_rich Low_complexity Low_complexity 1 22 0 1127 66 0 0 chr3 48879349 48879501 -169157657 + L1PA4 LINE L1 6004 6155 0 369 307 153 15 chr3 48879509 48879711 -169157447 + MIR SINE MIR 23 252 -10 408 312 15 73 chr3 48879995 48880200 -169156958 - MIR3 SINE MIR -1 207 15 596 267 13 0 chr3 48881252 48881402 -169155756 + MLT1J2 LTR MaLR 1 152 -298 269 274 48 0 chr3 48881491 48881575 -169155583 + MLT1J2 LTR MaLR 358 445 -5 304 314 59 0 chr3 48883084 48883202 -169153956 - L1ME4a LINE L1 -154 5967 5843 2178 115 0 0 chr3 48883412 48883717 -169153441 + AluSg SINE Alu 5 309 -1 1666 265 45 36 chr3 48885834 48886388 -169150770 - MLT1H1 LTR MaLR 0 555 1 474 281 75 35 chr3 48886510 48886738 -169150420 - HERVL LTR ERVL -732 4922 4686 30 83 0 0 chr3 48886914 48886986 -169150172 + AT_rich Low_complexity Low_complexity 1 72 0 46 0 0 0 chr3 48887065 48887111 -169150047 + AT_rich Low_complexity Low_complexity 1 46 0 1687 184 6 22 chr3 48888091 48888486 -169148672 + AluJo SINE Alu 1 390 0 1517 211 169 22 chr3 48888554 48888956 -169148202 - MLT1C LTR MaLR -6 461 1 297 0 0 0 chr3 48889154 48889187 -169147971 + (A)n Simple_repeat Simple_repeat 1 33 0 4911 133 65 22 chr3 48889324 48890315 -169146843 - L1MCa LINE L1 -746 5680 4733 1984 141 40 0 chr3 48890315 48890613 -169146545 - AluSx SINE Alu 0 312 3 4911 133 65 22 chr3 48890613 48890977 -169146181 - L1MCa LINE L1 -1693 4733 1359 21 0 0 0 chr3 48890977 48890998 -169146160 + AT_rich Low_complexity Low_complexity 1 21 0 413 167 0 0 chr3 48890999 48891065 -169146093 - LTR8 LTR ERV1 -105 586 521 6022 157 18 10 chr3 48891065 48891454 -169145704 - L1PA11 LINE L1 -1 6173 5788 2252 94 7 7 chr3 48891454 48891761 -169145397 - AluSc SINE Alu -2 307 1 6022 157 18 10 chr3 48891761 48892825 -169144333 - L1PA11 LINE L1 -386 5788 4712 2622 226 15 9 chr3 48893008 48894070 -169143088 - L1P4 LINE L1 -393 5781 4712 283 175 0 0 chr3 48894074 48894131 -169143027 - L1MCa LINE L1 -5009 1419 1363 1320 173 154 29 chr3 48894182 48894488 -169142670 + MER2 DNA MER2_type 1 344 0 855 302 69 32 chr3 48896111 48896575 -169140583 - L2 LINE L2 -1171 2143 1663 194 176 29 0 chr3 48896782 48896816 -169140342 - MIR SINE MIR -110 98 64 1914 94 8 0 chr3 48897111 48897365 -169139793 - AluSc SINE Alu -7 302 47 15982 156 20 9 chr3 48897551 48902539 -169134619 + L1MA2 LINE L1 2687 7723 0 204 258 32 0 chr3 48902621 48902714 -169134444 + (TA)n Simple_repeat Simple_repeat 1 96 0 3214 232 29 29 chr3 48903111 48904071 -169133087 + L1M1 LINE L1 2585 3544 -4021 553 121 0 0 chr3 48904071 48904154 -169133004 - AluS SINE Alu -230 83 1 14974 185 25 6 chr3 48904154 48907642 -169129516 + L1M1 LINE L1 3539 7094 -625 2245 96 3 0 chr3 48907828 48908120 -169129038 - AluSx SINE Alu -19 293 1 478 286 15 82 chr3 48908930 48909136 -169128022 + MIR SINE MIR 2 193 -69 354 85 0 0 chr3 48909187 48909234 -169127924 - MADE1 DNA Mariner -33 47 1 6019 123 19 31 chr3 48909274 48910293 -169126865 + L1MA3 LINE L1 1855 2860 -4705 2764 120 139 36 chr3 48910319 48910853 -169126305 + LTR1 LTR ERV1 196 784 -1 11605 152 49 21 chr3 48910853 48913695 -169123463 + L1MA3 LINE L1 4267 7216 -508 2432 78 7 0 chr3 48913695 48914003 -169123155 + AluY SINE Alu 1 310 -1 11605 152 49 21 chr3 48914003 48914527 -169122631 + L1MA3 LINE L1 7216 7724 0 245 306 27 9 chr3 48914696 48914807 -169122351 + L1M4 LINE L1 5609 5721 -457 8643 214 45 20 chr3 48914811 48915711 -169121447 - L1 LINE L1 -1434 4536 3660 2389 79 0 0 chr3 48915711 48916015 -169121143 - AluY SINE Alu -7 304 1 8643 214 45 20 chr3 48916015 48917426 -169119732 - L1 LINE L1 -2310 3660 2168 267 105 0 0 chr3 48917428 48917466 -169119692 - L1 LINE L1 -5851 40 3 2326 109 3 0 chr3 48917482 48917794 -169119364 - AluSq SINE Alu 0 313 1 240 352 11 0 chr3 48918636 48918727 -169118431 - HAL1 LINE L1 -1830 677 586 351 335 67 51 chr3 48918798 48919111 -169118047 - HAL1 LINE L1 -2043 464 147 2036 137 10 0 chr3 48919153 48919453 -169117705 - AluSx SINE Alu -9 303 1 2240 92 10 0 chr3 48919455 48919747 -169117411 - AluSx SINE Alu -17 295 1 352 256 39 0 chr3 48920744 48920822 -169116336 - L2 LINE L2 0 3313 3233 198 0 0 0 chr3 48921437 48921459 -169115699 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 186 133 0 0 chr3 48921774 48921804 -169115354 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 1132 299 110 36 chr3 48922792 48923490 -169113668 - L1ME3 LINE L1 -36 6126 5377 437 319 113 16 chr3 48923506 48923763 -169113395 + L1MEd LINE L1 442 723 -5396 1150 227 70 19 chr3 48923764 48924077 -169113081 - MER2 DNA MER2_type -16 329 1 242 315 19 28 chr3 48924481 48924589 -169112569 + L1MEc LINE L1 360 466 -5930 1094 264 42 47 chr3 48924832 48925595 -169111563 + L1MEc LINE L1 652 1458 -4938 3337 119 8 6 chr3 48925595 48926091 -169111067 - LOR1a LTR ERV1 0 497 1 1094 264 42 47 chr3 48926091 48926125 -169111033 + L1MEc LINE L1 1458 1491 -4905 4972 128 112 126 chr3 48926137 48927681 -169109477 + pTR5 LTR ERV1 743 2438 0 1233 267 77 39 chr3 48927695 48928204 -169108954 + L1MEc LINE L1 1517 2044 -4352 2236 247 79 56 chr3 48928310 48929267 -169107891 + L1MEc LINE L1 2547 3538 -2677 1907 152 7 20 chr3 48929267 48929570 -169107588 + AluJo SINE Alu 1 299 -13 2236 247 79 56 chr3 48929570 48929806 -169107352 + L1MEc LINE L1 3538 3767 -2448 408 218 90 126 chr3 48929842 48930254 -169106904 + MLT2C1 LTR ERVL 1 397 0 1959 219 87 42 chr3 48930542 48931139 -169106019 - MLT1E3 LTR MaLR 0 624 1 411 21 0 0 chr3 48931142 48931190 -169105968 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 2023 121 11 3 chr3 48932472 48932754 -169104404 + AluSg SINE Alu 1 284 -26 406 68 106 0 chr3 48932754 48932915 -169104243 + (TA)n Simple_repeat Simple_repeat 1 178 0 41 21 0 0 chr3 48932915 48932963 -169104195 + AT_rich Low_complexity Low_complexity 1 48 0 399 69 69 35 chr3 48932963 48933136 -169104022 + (TA)n Simple_repeat Simple_repeat 2 180 0 235 130 37 0 chr3 48933819 48933873 -169103285 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 2524 117 52 47 chr3 48933990 48934416 -169102742 + MSTA LTR MaLR 1 428 0 355 284 116 5 chr3 48934461 48934676 -169102482 + Charlie2 DNA MER1_type 1855 2093 -769 2326 241 63 4 chr3 48934684 48935467 -169101691 - L1ME1 LINE L1 -223 5943 5119 * 28872 105 14 8 chr3 48935446 48940601 -169096557 - L1PA7 LINE L1 -1 6153 973 587 159 225 7 chr3 48940602 48940740 -169096418 - MLT1-int LTR MaLR -868 503 336 363 152 137 0 chr3 48941249 48941322 -169095836 - AluS SINE Alu -233 75 1 1985 182 20 36 chr3 48941394 48941427 -169095731 - LTR56 LTR ERV1 0 445 413 2146 122 17 0 chr3 48941427 48941722 -169095436 + AluSq SINE Alu 1 300 -13 1985 182 20 36 chr3 48941722 48942132 -169095026 - LTR56 LTR ERV1 -32 413 9 266 349 12 0 chr3 48942156 48942242 -169094916 + L2 LINE L2 3223 3309 -4 4750 153 49 4 chr3 48943710 48944459 -169092699 - LTR39 LTR ERV1 0 783 1 306 287 23 39 chr3 48944792 48944921 -169092237 + LTR16A1 LTR ERVL 6 132 -325 210 341 34 0 chr3 48945452 48945540 -169091618 - MIR SINE MIR 0 262 172 302 309 96 0 chr3 48946721 48946815 -169090343 - MIR SINE MIR -68 140 38 2137 99 0 11 chr3 48947375 48947659 -169089499 - AluSx SINE Alu -22 290 10 368 305 85 0 chr3 48948649 48948767 -169088391 + MIR SINE MIR 70 197 -65 294 185 0 19 chr3 48948959 48949013 -169088145 + AluJo SINE Alu 83 135 -167 1087 159 128 5 chr3 48949249 48949444 -169087714 - MER20 DNA MER1_type 0 219 1 1743 279 79 34 chr3 48949635 48950227 -169086931 + MLT2E LTR ERVL 1 619 -9 853 225 64 25 chr3 48950647 48950883 -169086275 - LTR16C LTR ERVL 0 491 247 331 250 55 47 chr3 48950942 48951070 -169086088 - LTR16C LTR ERVL -361 130 2 278 279 0 137 chr3 48952077 48952238 -169084920 - MIR3 SINE MIR -63 145 7 568 209 20 138 chr3 48952430 48952626 -169084532 + MER5B DNA MER1_type 6 178 0 693 235 17 45 chr3 48952636 48952762 -169084396 - MER5A DNA MER1_type -15 174 53 1772 154 117 26 chr3 48952762 48952932 -169084226 - THE1C LTR MaLR -1 374 221 204 40 0 0 chr3 48952932 48952957 -169084201 + (GA)n Simple_repeat Simple_repeat 2 26 0 1772 154 117 26 chr3 48952957 48953129 -169084029 - THE1C LTR MaLR -154 221 1 693 235 17 45 chr3 48953129 48953181 -169083977 - MER5A DNA MER1_type -136 53 1 193 253 13 63 chr3 48953297 48953376 -169083782 - L3 LINE CR1 -1076 501 427 25 0 0 0 chr3 48953847 48953872 -169083286 + AT_rich Low_complexity Low_complexity 1 25 0 2868 79 8 3 chr3 48954110 48954463 -169082695 - THE1A LTR MaLR 0 355 1 1065 211 88 28 chr3 48954625 48954909 -169082249 - LTR16A1 LTR ERVL -10 447 147 325 121 352 0 chr3 48954998 48955089 -169082069 - LTR16A1 LTR ERVL -334 123 1 250 317 41 24 chr3 48955280 48955328 -169081830 + L2 LINE L2 3136 3182 -90 2407 82 3 0 chr3 48955328 48955622 -169081536 + AluSp SINE Alu 1 295 -18 250 317 41 24 chr3 48955622 48955696 -169081462 + L2 LINE L2 3182 3260 -12 217 0 0 57 chr3 48956083 48956118 -169081040 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 2193 113 7 0 chr3 48957372 48957663 -169079495 - AluSx SINE Alu -19 293 1 1189 195 183 15 chr3 48957698 48958093 -169079065 - L1ME2 LINE L1 -1 6163 5614 299 325 48 64 chr3 48958276 48958333 -169078825 - L2 LINE L2 -994 2320 2264 817 263 6 11 chr3 48958333 48958512 -169078646 + MER45A DNA AcHobo 1 178 0 299 325 48 64 chr3 48958512 48958703 -169078455 - L2 LINE L2 -1050 2264 2076 1357 143 49 6 chr3 48958858 48959289 -169077869 - LTR54 LTR ERV1 0 510 1 478 141 91 30 chr3 48959668 48959767 -169077391 - FLAM_A SINE Alu -6 136 32 238 324 29 19 chr3 48960329 48960434 -169076724 - L2 LINE L2 -1479 1835 1730 1353 224 111 17 chr3 48960475 48960881 -169076277 + L1ME1 LINE L1 4714 5157 -989 1579 214 16 28 chr3 48960883 48961040 -169076118 + L1ME1 LINE L1 5325 5483 -683 542 138 0 0 chr3 48961040 48961127 -169076031 + L1MB7 LINE L1 6098 6184 0 1579 214 16 28 chr3 48961127 48961357 -169075801 + L1ME1 LINE L1 5483 5707 -459 1974 229 139 13 chr3 48961359 48961883 -169075275 + MLT1E2 LTR MaLR 1 590 -36 1808 198 39 9 chr3 48961917 48962350 -169074808 + L1ME1 LINE L1 5710 6161 -5 204 325 12 12 chr3 48962527 48962607 -169074551 - L2 LINE L2 -5 3267 3188 3078 147 15 6 chr3 48962645 48963122 -169074036 + LTR39 LTR ERV1 1 481 -302 9515 166 22 48 chr3 48963125 48964820 -169072338 - MSTA-int LTR MaLR 0 1651 1 2077 109 171 60 chr3 48964820 48964866 -169072292 - MSTA LTR MaLR 0 428 389 2377 92 0 0 chr3 48964866 48965159 -169071999 + AluY SINE Alu 1 293 -18 2077 109 171 60 chr3 48965159 48965497 -169071661 - MSTA LTR MaLR -39 389 1 1640 265 36 18 chr3 48965559 48965997 -169071161 + LTR16C LTR ERVL 45 490 -1 330 301 81 27 chr3 48966048 48966234 -169070924 + L2 LINE L2 3118 3313 0 2530 44 0 7 chr3 48967147 48967441 -169069717 - AluY SINE Alu -19 292 1 1271 254 59 26 chr3 48967450 48967876 -169069282 - LTR16A1 LTR ERVL -2 455 16 369 295 45 0 chr3 48968167 48968279 -169068879 - MIR SINE MIR -1 261 145 248 293 8 64 chr3 48968284 48968437 -169068721 + L1P LINE L1 3589 3733 -2413 22 35 0 0 chr3 48968461 48968490 -169068668 + AT_rich Low_complexity Low_complexity 1 29 0 242 277 157 0 chr3 48969676 48969759 -169067399 + MIR SINE MIR 59 154 -108 3408 218 106 70 chr3 48969779 48971101 -169066057 + L1MC4a LINE L1 5865 7233 -575 398 196 23 45 chr3 48971413 48971546 -169065612 + L1MC3 LINE L1 6966 7079 -706 371 280 0 32 chr3 48971546 48971639 -169065519 + MLT1F1 LTR MaLR 35 124 -443 2915 178 13 28 chr3 48971641 48972242 -169064916 + L1MD3 LINE L1 7404 7995 0 361 288 153 24 chr3 48972410 48972861 -169064297 + L1MB8 LINE L1 5256 5764 -398 200 157 20 20 chr3 48972964 48973015 -169064143 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 1364 171 25 17 chr3 48973169 48973408 -169063750 - AluJb SINE Alu -24 288 48 1703 161 33 33 chr3 48973486 48973785 -169063373 - AluJo SINE Alu -13 299 1 1314 237 62 11 chr3 48974342 48974714 -169062444 + L1MB8 LINE L1 5787 6177 -1 3089 116 105 151 chr3 48975438 48976193 -169060965 - pTR5 LTR ERV1 0 2438 1352 530 273 0 27 chr3 48976212 48976322 -169060836 - FLAM_A SINE Alu -35 107 1 879 118 53 91 chr3 48976324 48976386 -169060772 - LTR54 LTR ERV1 -330 180 117 2441 73 0 10 chr3 48976386 48976700 -169060458 - AluY SINE Alu 0 311 1 879 118 53 91 chr3 48976700 48976824 -169060334 - LTR54 LTR ERV1 -393 117 1 2046 188 52 25 chr3 48977018 48977610 -169059548 + pTR5 LTR ERV1 732 1339 -1099 1259 132 52 34 chr3 48977614 48977912 -169059246 + LTR54 LTR ERV1 151 510 0 646 192 192 0 chr3 48979057 48979208 -169057950 + MER5A DNA MER1_type 10 189 0 357 245 122 14 chr3 48979662 48979809 -169057349 - L2 LINE L2 -1 3312 3150 1583 277 97 37 chr3 48979821 48980837 -169056321 + L2 LINE L2 2225 3312 -1 585 290 23 11 chr3 48981322 48981498 -169055660 - MER5B DNA MER1_type 0 178 1 635 262 71 11 chr3 48982005 48982188 -169054970 - MIR SINE MIR -68 194 1 246 276 11 35 chr3 48982188 48982207 -169054951 + (TA)n Simple_repeat Simple_repeat 1 19 -66 2117 194 49 68 chr3 48982207 48982733 -169054425 - MLT2B1 LTR ERVL 0 520 5 246 276 11 35 chr3 48982733 48982800 -169054358 + (TA)n Simple_repeat Simple_repeat 19 85 0 252 314 88 10 chr3 48984420 48984522 -169052636 + L2 LINE L2 3200 3309 -4 1680 228 36 23 chr3 48984764 48985034 -169052124 + L1ME3A LINE L1 5717 5997 -173 1092 174 36 41 chr3 48985034 48985253 -169051905 + MER20 DNA MER1_type 1 218 -1 1680 228 36 23 chr3 48985253 48985425 -169051733 + L1ME3A LINE L1 5997 6165 -5 1852 240 88 11 chr3 48986238 48986683 -169050475 + MLT1H LTR MaLR 1 479 -70 2135 148 49 22 chr3 48987328 48987693 -169049465 + THE1C LTR MaLR 1 375 0 282 261 8 50 chr3 48988142 48988261 -169048897 + L1ME LINE L1 5769 5882 -239 23 0 0 0 chr3 48988440 48988463 -169048695 + AT_rich Low_complexity Low_complexity 1 23 0 623 256 19 12 chr3 48988647 48988807 -169048351 - MIR SINE MIR 0 262 102 454 299 42 0 chr3 48989198 48989342 -169047816 + MER103 DNA DNA 16 165 -1 193 259 0 19 chr3 48989355 48989409 -169047749 + MER5B DNA MER1_type 121 173 -5 1894 190 40 8 chr3 48990009 48990453 -169046705 - MER89 LTR ERV1 0 559 3 1771 206 12 3 chr3 48990459 48990779 -169046379 - MER89-int LTR ERV1 -5 6796 6474 297 273 52 0 chr3 48990782 48990859 -169046299 - MER89-int LTR ERV1 -1950 4851 4771 4033 248 50 71 chr3 48990861 48992226 -169044932 - MER89-int LTR ERV1 -5202 1599 263 645 141 33 25 chr3 48992223 48992344 -169044814 + MER89-int LTR ERV1 154 275 -6526 * 4684 143 60 21 chr3 48992348 48992815 -169044343 + MER54B LTR ERVL 1 511 -282 297 0 0 0 chr3 48992815 48992848 -169044310 + (GA)n Simple_repeat Simple_repeat 2 34 0 4684 143 60 21 chr3 48992848 48993143 -169044015 + MER54B LTR ERVL 511 793 0 633 178 206 6 chr3 48993159 48993339 -169043819 - MER89 LTR ERV1 -147 412 197 449 122 40 0 chr3 48993324 48993398 -169043760 - MER89 LTR ERV1 -482 77 1 * 691 238 29 62 chr3 48993970 48994214 -169042944 - L2 LINE L2 -1 3312 3077 25 0 0 0 chr3 48994937 48994962 -169042196 + AT_rich Low_complexity Low_complexity 1 25 0 520 266 18 9 chr3 48995392 48995505 -169041653 + MER91A DNA MER1_type 1 114 -82 1330 244 34 52 chr3 48995857 48996300 -169040858 + LTR16A1 LTR ERVL 23 457 0 6152 133 2 21 chr3 48996396 48997183 -169039975 - L1PA15 LINE L1 0 6165 5402 2278 123 0 0 chr3 48997183 48997493 -169039665 - AluSx SINE Alu -2 310 1 6152 133 2 21 chr3 48997493 48997728 -169039430 - L1PA15 LINE L1 -763 5402 5164 315 334 194 11 chr3 48997966 48998415 -169038743 - L1MC/D LINE L1 -1961 5847 5317 1326 240 102 17 chr3 48998560 48998981 -169038177 + LTR16A1 LTR ERVL 1 457 0 1243 237 10 13 chr3 48999652 48999952 -169037206 - L1MD2 LINE L1 -4 6355 6057 3608 91 75 45 chr3 48999952 49000514 -169036644 + LTR12 LTR ERV1 1 579 -135 1157 225 39 7 chr3 49000514 49000794 -169036364 - L1MD2 LINE L1 -297 6062 5774 1561 101 71 4 chr3 49000894 49001132 -169036026 + L1PA13 LINE L1 5905 6158 -5 675 245 0 0 chr3 49001132 49001291 -169035867 - L1MC/D LINE L1 -866 5280 5122 221 353 60 53 chr3 49001300 49001450 -169035708 - L2 LINE L2 -5 3267 3117 359 288 49 35 chr3 49001672 49001815 -169035343 - MIR SINE MIR -66 142 38 562 228 27 27 chr3 49003066 49003215 -169033943 + MLT1K LTR MaLR 430 578 -10 464 193 9 0 chr3 49003270 49003379 -169033779 + GA-rich Low_complexity Low_complexity 1 110 0 1399 238 78 58 chr3 49003721 49003929 -169033229 + L1MC4a LINE L1 5295 5005 -1151 1081 236 158 30 chr3 49003929 49004391 -169032767 - LTR33A LTR ERVL -1 522 2 1399 238 78 58 chr3 49004391 49004826 -169032332 + L1MC4a LINE L1 5004 5429 -727 21 0 0 0 chr3 49004993 49005014 -169032144 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr3 49005143 49005168 -169031990 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 23 54 0 0 chr3 49005970 49006007 -169031151 + GC_rich Low_complexity Low_complexity 1 37 0 314 291 102 89 chr3 49006013 49006562 -169030596 + L1M2 LINE L1 445 1000 -5849 498 251 133 25 chr3 49008678 49008881 -169028277 - L1ME3A LINE L1 -2 6168 5944 279 294 48 36 chr3 49010968 49011249 -169025909 - L1MD2 LINE L1 -470 5700 5413 506 315 106 15 chr3 49011370 49011824 -169025334 - L1MD2 LINE L1 -1164 4982 4488 1873 121 40 83 chr3 49011902 49012300 -169024858 - L1MB8 LINE L1 -16 6162 5782 233 148 0 66 chr3 49012301 49012362 -169024796 + LTR66 LTR ERVL 394 450 -160 317 289 8 39 chr3 49012378 49012506 -169024652 - L1MD2 LINE L1 -1746 4400 4277 230 291 47 47 chr3 49012583 49012837 -169024321 - L1MD2 LINE L1 -1979 4167 3914 2536 62 0 3 chr3 49012969 49013275 -169023883 - AluY SINE Alu -1 310 6 224 228 0 35 chr3 49013396 49013453 -169023705 + MIR SINE MIR 178 232 -30 296 258 65 11 chr3 49013642 49013735 -169023423 - L1ME4a LINE L1 -50 6071 5974 1108 185 63 42 chr3 49014358 49014645 -169022513 - MER33 DNA MER1_type -1 323 31 24 0 0 0 chr3 49014857 49014881 -169022277 + AT_rich Low_complexity Low_complexity 1 24 0 409 312 52 26 chr3 49015103 49015334 -169021824 - L1ME4a LINE L1 -518 5603 5367 414 302 40 27 chr3 49015449 49015750 -169021408 - L1MC4a LINE L1 -1976 5832 5528 2162 114 7 3 chr3 49015969 49016259 -169020899 + AluSq SINE Alu 5 295 -18 25 0 0 0 chr3 49016972 49016997 -169020161 + AT_rich Low_complexity Low_complexity 1 25 0 180 224 148 118 chr3 49017287 49017524 -169019634 + MIR SINE MIR 18 261 -1 22 35 0 0 chr3 49017600 49017629 -169019529 + AT_rich Low_complexity Low_complexity 1 29 0 424 240 39 81 chr3 49017932 49018115 -169019043 - L1ME3A LINE L1 -265 5905 5716 198 0 0 0 chr3 49018115 49018137 -169019021 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 424 240 39 81 chr3 49018137 49018176 -169018982 - L1ME3A LINE L1 -454 5716 5677 363 153 69 0 chr3 49018176 49018248 -169018910 - MER116 DNA Mariner 0 80 4 424 240 39 81 chr3 49018248 49018332 -169018826 - L1ME3A LINE L1 -493 5677 5611 4069 191 11 21 chr3 49018461 49019329 -169017829 - L1 LINE L1 -967 5179 4320 1529 195 10 17 chr3 49019340 49019642 -169017516 - AluJo SINE Alu -7 305 6 313 271 215 33 chr3 49019779 49020159 -169016999 + MLT1J2 LTR MaLR 1 444 -2 235 306 19 46 chr3 49020217 49020325 -169016833 - MIR3 SINE MIR -97 111 7 419 125 0 14 chr3 49021508 49021580 -169015578 + L1P LINE L1 5141 5211 -935 3107 198 14 21 chr3 49021582 49022162 -169014996 + LTR22 LTR ERVK 2 577 -3 7133 78 3 0 chr3 49022198 49023144 -169014014 + L1PA3 LINE L1 5207 6155 0 11112 123 17 25 chr3 49023417 49025266 -169011892 + L1P LINE L1 928 2762 -3384 17187 39 1 4 chr3 49025382 49027511 -169009647 - L1P LINE L1 -2588 3558 1437 21 57 0 0 chr3 49027952 49027987 -169009171 + AT_rich Low_complexity Low_complexity 1 35 0 257 234 89 73 chr3 49029137 49029177 -169007981 - MIR SINE MIR -64 198 160 2264 117 3 0 chr3 49029177 49029486 -169007672 - AluSg SINE Alu 0 310 1 257 234 89 73 chr3 49029486 49029569 -169007589 - MIR SINE MIR -102 160 73 5149 33 0 0 chr3 49029683 49030285 -169006873 - L1P LINE L1 -1630 4516 3915 * 11927 27 0 0 chr3 49030281 49031685 -169005473 - L1P LINE L1 -2891 3255 1852 698 266 13 13 chr3 49031685 49031918 -169005240 + L1P LINE L1 1095 1327 -4819 303 301 81 44 chr3 49032252 49032388 -169004770 + HAL1 LINE L1 1 141 -2366 268 252 199 35 chr3 49032804 49033030 -169004128 + HAL1 LINE L1 2245 2507 0 1759 140 44 4 chr3 49033669 49033975 -169003183 + AluSx SINE Alu 1 317 0 21 0 0 0 chr3 49033989 49034010 -169003148 + AT_rich Low_complexity Low_complexity 1 21 0 16666 41 0 0 chr3 49034307 49036998 -169000160 + L1PA3 LINE L1 3461 6150 -5 226 262 148 104 chr3 49037905 49038088 -168999070 - MIR3 SINE MIR -13 195 5 296 48 24 0 chr3 49039644 49039686 -168997472 + (CA)n Simple_repeat Simple_repeat 1 43 0 366 317 39 29 chr3 49039763 49039971 -168997187 - L1M4 LINE L1 -1409 4737 4528 435 239 53 0 chr3 49042403 49042516 -168994642 - MER20 DNA MER1_type -100 119 1 1963 115 16 3 chr3 49043544 49043848 -168993310 - L1PB1 LINE L1 -20 6131 5824 390 85 73 0 chr3 49043848 49043930 -168993228 + CT-rich Low_complexity Low_complexity 3 90 0 1028 160 18 6 chr3 49043930 49044099 -168993059 - AluSc SINE Alu -25 284 114 248 205 173 16 chr3 49044233 49044360 -168992798 + L1MC5 LINE L1 7509 7655 -306 311 324 110 11 chr3 49044437 49044619 -168992539 + MIR SINE MIR 57 256 -6 235 336 131 8 chr3 49045667 49045789 -168991369 - L2 LINE L2 0 3272 3136 * 322 257 50 20 chr3 49045787 49045888 -168991270 + L2 LINE L2 1167 1270 -2044 695 278 38 58 chr3 49045888 49046201 -168990957 + L2 LINE L2 2192 2498 -816 221 245 20 0 chr3 49046482 49046531 -168990627 - L2 LINE L2 -38 3275 3226 275 200 0 92 chr3 49046782 49046847 -168990311 + MIR3 SINE MIR 108 166 -42 51 31 0 0 chr3 49047839 49047904 -168989254 + AT_rich Low_complexity Low_complexity 1 65 0 25 0 0 0 chr3 49048636 49048661 -168988497 + AT_rich Low_complexity Low_complexity 1 25 0 321 309 29 4 chr3 49049341 49049610 -168987548 - L1MC4a LINE L1 -333 5830 5609 32 57 0 0 chr3 49050064 49050117 -168987041 + AT_rich Low_complexity Low_complexity 1 53 0 348 83 0 0 chr3 49051675 49051723 -168985435 + (CA)n Simple_repeat Simple_repeat 1 48 0 397 334 51 11 chr3 49051777 49051983 -168985175 - L1MC4a LINE L1 -305 5816 5658 1190 245 134 17 chr3 49052154 49052615 -168984543 - L1ME3A LINE L1 -2 6168 5654 616 259 83 17 chr3 49052678 49052967 -168984191 - L1ME LINE L1 -318 5803 5496 2369 96 0 0 chr3 49053184 49053487 -168983671 - AluSx SINE Alu -9 303 1 997 244 177 28 chr3 49055069 49055859 -168981299 - L1ME LINE L1 -2884 3262 2355 3337 112 54 32 chr3 49055887 49056063 -168981095 - L1MA5A LINE L1 -5 6292 6121 1455 71 71 49 chr3 49056063 49056288 -168980870 - MER30 DNA MER1_type 0 230 1 3337 112 54 32 chr3 49056288 49056708 -168980450 - L1MA5A LINE L1 -176 6121 5683 2115 125 20 0 chr3 49056721 49057025 -168980133 - AluSx SINE Alu -2 310 1 3755 148 11 9 chr3 49057025 49058137 -168979021 - L1PB1 LINE L1 -322 6545 5433 * 8048 170 44 8 chr3 49058136 49059717 -168977441 - L1PB1 LINE L1 -4621 2242 606 7422 107 8 2 chr3 49059820 49060949 -168976209 - L1P3 LINE L1 -5325 1136 1 1725 309 94 44 chr3 49061709 49063106 -168974052 - MERVL LTR ERVL -1076 4409 2944 180 0 0 0 chr3 49063874 49063894 -168973264 + (A)n Simple_repeat Simple_repeat 1 20 0 900 319 174 4 chr3 49064223 49064728 -168972430 + L2 LINE L2 37 627 -2687 719 264 63 39 chr3 49064731 49065093 -168972065 - MLT2C2 LTR ERVL -7 457 91 849 157 73 6 chr3 49065100 49065123 -168972035 - Ricksha DNA DNA -1672 374 340 2334 169 69 6 chr3 49065123 49065602 -168971556 - ERVL-C2 LTR ERVL -1 5763 5255 487 257 7 29 chr3 49065616 49065752 -168971406 + L2 LINE L2 659 791 -2523 2784 204 43 6 chr3 49066422 49067048 -168970110 - L1PB1 LINE L1 -6214 649 1 563 341 23 23 chr3 49067277 49067626 -168969532 + L1M4 LINE L1 2149 2497 -4999 1385 194 41 41 chr3 49067626 49067920 -168969238 + AluJb SINE Alu 9 302 -10 252 86 0 0 chr3 49067931 49067966 -168969192 + (GGAA)n Simple_repeat Simple_repeat 4 38 0 263 227 40 0 chr3 49067966 49068041 -168969117 + L1M4 LINE L1 2468 2545 -4944 752 197 26 4 chr3 49068422 49068628 -168968530 + L1PA15-16 LINE L1 1296 1469 -4672 * 2466 256 34 26 chr3 49068621 49069747 -168967411 + L1M4 LINE L1 3086 4229 -3336 11984 217 66 21 chr3 49069905 49074749 -168962409 + L1PA13 LINE L1 240 5553 -1244 209 256 0 0 chr3 49075390 49075429 -168961729 - L2 LINE L2 -17 3255 3217 880 188 41 15 chr3 49075460 49075657 -168961501 + MER74A LTR ERVL 1 202 -356 1685 233 32 23 chr3 49075665 49076380 -168960778 - L1M4c LINE L1 -4749 1897 1186 21 0 0 0 chr3 49076685 49076706 -168960452 + AT_rich Low_complexity Low_complexity 1 21 0 2141 141 0 33 chr3 49076739 49077107 -168960051 + L1PA15 LINE L1 5804 6159 -6 461 205 79 0 chr3 49077107 49077234 -168959924 + L1M4 LINE L1 5693 5829 -1736 1000 74 0 0 chr3 49077236 49077358 -168959800 - AluSp/q SINE Alu -21 292 171 3982 188 63 11 chr3 49077359 49078376 -168958782 + L1M2 LINE L1 4407 5462 -743 310 299 90 12 chr3 49080328 49080495 -168956663 + MIR SINE MIR 6 185 -77 23 0 0 0 chr3 49080665 49080688 -168956470 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr3 49081188 49081214 -168955944 + AT_rich Low_complexity Low_complexity 1 26 0 240 184 20 0 chr3 49081638 49081687 -168955471 - MER91 DNA MER1_type -63 127 78 2213 106 0 30 chr3 49081945 49082248 -168954910 - AluSq SINE Alu -19 294 1 202 300 17 17 chr3 49082341 49082401 -168954757 - L2 LINE L2 -8 3264 3205 625 293 111 14 chr3 49082738 49083161 -168953997 - L1ME4a LINE L1 -82 6039 5576 580 190 26 0 chr3 49084130 49084246 -168952912 + Charlie5 DNA MER1_type 3 121 -2491 689 238 26 0 chr3 49084247 49084474 -168952684 + Charlie5 DNA MER1_type 2234 2466 -146 3797 286 116 17 chr3 49084546 49086126 -168951032 - L2 LINE L2 -897 2417 682 817 192 23 12 chr3 49086131 49086303 -168950855 - Tigger1 DNA MER2_type -2 2416 2243 2061 214 15 2 chr3 49086303 49086761 -168950397 + L1M2c LINE L1 1241 1704 -5085 * 4697 126 7 1 chr3 49086744 49087505 -168949653 + L1PB1 LINE L1 5386 6150 -1 319 145 40 0 chr3 49087517 49087593 -168949565 + L1M2c LINE L1 1689 1767 -5022 3436 185 31 59 chr3 49087605 49088577 -168948581 + L1M2c LINE L1 1902 2818 -3970 1526 216 10 16 chr3 49088577 49088887 -168948271 + AluJo SINE Alu 1 308 -4 3436 185 31 59 chr3 49088887 49089375 -168947783 + L1M2c LINE L1 2818 3318 -3470 305 286 91 43 chr3 49089568 49089942 -168947216 + L1MEc LINE L1 1241 1632 -4764 348 214 0 0 chr3 49089963 49090033 -168947125 + L1MDb LINE L1 20 89 -6320 1052 220 24 4 chr3 49090041 49090296 -168946862 + MLT2D LTR ERVL 1 260 -154 355 228 33 87 chr3 49090319 49090503 -168946655 - L1MC4a LINE L1 -1856 5952 5779 182 167 0 24 chr3 49090612 49090654 -168946504 + CT-rich Low_complexity Low_complexity 4 44 0 636 236 89 50 chr3 49090662 49090942 -168946216 - L1MC4a LINE L1 -2221 5587 5297 13720 60 2 4 chr3 49091016 49092848 -168944310 - L1P LINE L1 -4311 1835 8 316 324 38 0 chr3 49092895 49093000 -168944158 + L1MC4 LINE L1 6613 6721 -1321 2244 84 0 37 chr3 49093131 49093428 -168943730 + AluSc SINE Alu 1 286 -23 219 125 0 0 chr3 49093437 49093477 -168943681 + (TA)n Simple_repeat Simple_repeat 1 40 0 404 227 43 34 chr3 49093667 49093874 -168943284 - L1ME LINE L1 -5333 737 529 339 306 23 61 chr3 49094045 49094306 -168942852 - L1ME LINE L1 -5539 531 281 446 269 46 28 chr3 49094317 49094393 -168942765 - L1ME LINE L1 -5839 231 158 185 83 28 0 chr3 49094393 49094429 -168942729 + (TTA)n Simple_repeat Simple_repeat 3 39 0 1143 50 0 0 chr3 49094429 49094570 -168942588 - L1PA4 LINE L1 -18 6137 5997 446 269 46 28 chr3 49094570 49094708 -168942450 - L1ME LINE L1 -5911 159 12 518 293 75 19 chr3 49094900 49095112 -168942046 + MIR SINE MIR 31 254 -8 464 206 79 42 chr3 49095130 49095319 -168941839 - HAL1 LINE L1 -1078 1429 1234 1169 276 91 48 chr3 49095326 49096030 -168941128 - HAL1 LINE L1 -1320 1187 454 574 330 32 70 chr3 49096040 49096385 -168940773 - HAL1 LINE L1 -2174 333 2 32 0 0 0 chr3 49096811 49096843 -168940315 + AT_rich Low_complexity Low_complexity 1 32 0 570 257 198 0 chr3 49096933 49097120 -168940038 + MIR SINE MIR 13 236 -26 232 311 0 0 chr3 49198664 49198754 -168838404 - L1MC4 LINE L1 -1339 6703 6614 * 333 256 0 0 chr3 49198678 49198768 -168838390 + L1MC4 LINE L1 6614 6703 -1339 486 49 0 0 chr3 49198768 49198829 -168838329 + (TA)n Simple_repeat Simple_repeat 2 62 0 2229 107 0 26 chr3 49199049 49199357 -168837801 + AluSx SINE Alu 7 306 -6 1823 187 61 27 chr3 49199968 49200379 -168836779 + MSTB LTR MaLR 1 425 -1 579 306 58 24 chr3 49200620 49201084 -168836074 + HAL1 LINE L1 812 1291 -1216 506 244 63 0 chr3 49201597 49201724 -168835434 - MER103 DNA DNA -1 165 31 379 332 39 5 chr3 49202138 49202346 -168834812 + MIR SINE MIR 16 230 -32 300 91 0 0 chr3 49202360 49202404 -168834754 + (CAT)n Simple_repeat Simple_repeat 3 46 0 31 44 0 0 chr3 49202824 49202869 -168834289 + AT_rich Low_complexity Low_complexity 1 45 0 7777 25 17 0 chr3 49203723 49205362 -168831796 - L1PA4 LINE L1 -4 6151 4497 23 33 0 0 chr3 49205969 49205999 -168831159 + AT_rich Low_complexity Low_complexity 1 30 0 460 329 120 5 chr3 49206012 49206228 -168830930 - MIR SINE MIR 0 262 22 2232 111 7 0 chr3 49206228 49206516 -168830642 - AluSx SINE Alu -17 295 6 773 0 0 0 chr3 49207896 49207983 -168829175 - L1P2 LINE L1 -652 5502 5416 346 250 66 13 chr3 49207984 49208136 -168829022 + L1MC4a LINE L1 5818 5977 -1831 2887 30 6 0 chr3 49208253 49208634 -168828524 + L1PA3 LINE L1 5820 6202 0 1499 125 52 16 chr3 49208790 49209038 -168828120 + L1PA10 LINE L1 5912 6168 0 478 272 87 12 chr3 49209070 49209243 -168827915 + L2 LINE L2 3128 3313 0 2273 98 3 3 chr3 49209425 49209720 -168827438 - AluSc SINE Alu -14 295 1 280 304 10 10 chr3 49209944 49210046 -168827112 - MER5B DNA MER1_type -5 173 72 2366 90 3 0 chr3 49210846 49211147 -168826011 + AluSx SINE Alu 1 302 -10 11641 68 10 2 chr3 49211770 49213282 -168823876 - L1P LINE L1 -4588 1558 35 302 264 0 0 chr3 49214016 49214103 -168823055 - MIR SINE MIR 0 262 176 586 258 0 51 chr3 49214153 49214331 -168822827 + MIR SINE MIR 60 228 -34 513 271 58 10 chr3 49215344 49215551 -168821607 - L2 LINE L2 -185 3128 2912 252 273 0 0 chr3 49215877 49215965 -168821193 + (CA)n Simple_repeat Simple_repeat 2 89 0 4440 27 2 2 chr3 49216223 49216735 -168820423 + L1PA3 LINE L1 5642 6153 -2 1994 145 0 10 chr3 49218382 49218686 -168818472 - AluJb SINE Alu -11 301 1 972 247 43 0 chr3 49218973 49219204 -168817954 + LTR16A1 LTR ERVL 214 454 -3 906 40 97 8 chr3 49219983 49220107 -168817051 + MER85 DNA T2_type 1 135 -4 268 228 99 76 chr3 49220775 49220986 -168816172 - MER30 DNA MER1_type 0 230 15 181 314 39 39 chr3 49221722 49221824 -168815334 - L2 LINE L2 -16 3297 3196 987 144 46 41 chr3 49221830 49222025 -168815133 + MER20 DNA MER1_type 7 202 -17 374 275 0 0 chr3 49222168 49222259 -168814899 - FLAM_A SINE Alu -7 126 36 416 184 0 46 chr3 49223371 49223458 -168813700 - FLAM_A SINE Alu -59 83 1 2206 169 173 0 chr3 49223670 49223792 -168813366 - MER74A LTR ERVL 0 558 458 329 67 0 0 chr3 49223792 49223837 -168813321 + L1PA5 LINE L1 6110 6154 0 2206 169 173 0 chr3 49223837 49224171 -168812987 - MER74A LTR ERVL -100 458 23 333 0 0 0 chr3 49224767 49224804 -168812354 + (TC)n Simple_repeat Simple_repeat 1 37 0 289 283 111 10 chr3 49224857 49224956 -168812202 - MIR SINE MIR -91 171 63 948 239 9 14 chr3 49225699 49225917 -168811241 + MLT1H1 LTR MaLR 1 217 -338 1313 197 81 30 chr3 49225918 49226213 -168810945 + MER70B LTR ERVL 3 312 -266 776 225 219 21 chr3 49226697 49227031 -168810127 + LTR33A LTR ERVL 104 503 -20 932 174 0 7 chr3 49227084 49227239 -168809919 - LTR32 LTR ERVL 0 471 318 1843 189 27 12 chr3 49227373 49227707 -168809451 - LTR32 LTR ERVL -119 352 14 1603 133 0 17 chr3 49228145 49228385 -168808773 + AluSq SINE Alu 1 236 -77 288 312 32 32 chr3 49228556 49228681 -168808477 + MIR3 SINE MIR 30 154 -54 376 304 72 77 chr3 49228782 49229196 -168807962 + MLT1J LTR MaLR 100 511 0 401 212 40 0 chr3 49230586 49230685 -168806473 - L2 LINE L2 -5 3308 3206 2346 104 7 0 chr3 49230898 49231207 -168805951 + AluSq SINE Alu 1 311 -2 189 245 19 0 chr3 49231430 49231483 -168805675 + MIR SINE MIR 78 131 -131 1179 185 62 8 chr3 49233537 49233796 -168803362 - ORSL DNA AcHobo -1 274 2 339 213 139 0 chr3 49234080 49234188 -168802970 + MIR SINE MIR 81 203 -59 195 42 0 0 chr3 49234611 49234635 -168802523 + (GA)n Simple_repeat Simple_repeat 2 25 0 214 263 131 40 chr3 49234827 49234926 -168802232 - L2 LINE L2 -27 3245 3138 442 310 103 9 chr3 49235227 49235440 -168801718 - MIR SINE MIR -13 249 17 249 248 106 18 chr3 49236300 49236413 -168800745 - MIR SINE MIR -32 230 108 23 33 0 0 chr3 49237343 49237373 -168799785 + AT_rich Low_complexity Low_complexity 1 30 0 557 289 123 12 chr3 49237760 49238277 -168798881 + L2 LINE L2 2677 3264 -49 308 264 113 81 chr3 49238509 49238915 -168798243 - L1M4 LINE L1 -1221 4925 4507 2353 162 26 35 chr3 49239541 49239968 -168797190 + MER66B LTR ERV1 1 423 -63 537 272 110 51 chr3 49240068 49240325 -168796833 - L1ME LINE L1 -361 5760 5477 1611 193 3 3 chr3 49240325 49240610 -168796548 - AluJo SINE Alu -15 297 13 537 272 110 51 chr3 49240610 49240687 -168796471 - L1ME LINE L1 -644 5477 5406 251 276 26 0 chr3 49240708 49240784 -168796374 + L2 LINE L2 3231 3308 -5 233 133 44 0 chr3 49240860 49240905 -168796253 - L1ME LINE L1 -747 5399 5353 207 0 0 0 chr3 49240905 49240928 -168796230 + (T)n Simple_repeat Simple_repeat 1 23 0 2552 103 111 8 chr3 49240972 49241360 -168795798 + MSTA LTR MaLR 1 428 0 7814 22 1 0 chr3 49241476 49242632 -168794526 + L1PA4 LINE L1 4995 6151 -4 21 57 0 0 chr3 49242633 49242668 -168794490 + AT_rich Low_complexity Low_complexity 1 35 0 390 320 81 32 chr3 49242712 49243021 -168794137 - L1M4 LINE L1 -1070 5076 4753 414 310 25 10 chr3 49243024 49243221 -168793937 - L1M4 LINE L1 -1457 4689 4490 321 252 13 0 chr3 49243294 49243408 -168793750 + L1MC4 LINE L1 2004 6981 -1341 1495 197 57 0 chr3 49243408 49243723 -168793435 - L1ME1 LINE L1 -14 6152 5820 430 189 133 35 chr3 49243734 49243877 -168793281 - L1ME1 LINE L1 -413 5753 5597 253 256 120 17 chr3 49244064 49244181 -168792977 - L1ME1 LINE L1 -1945 4201 4073 360 326 138 41 chr3 49244479 49244921 -168792237 - L1ME1 LINE L1 -2237 3909 3425 416 288 66 42 chr3 49245197 49245530 -168791628 - L1M4 LINE L1 -2135 4011 3671 1259 229 55 70 chr3 49247829 49248227 -168788931 - LTR16C LTR ERVL 0 491 100 273 29 0 0 chr3 49248327 49248361 -168788797 + (TG)n Simple_repeat Simple_repeat 2 35 0 332 182 227 0 chr3 49248608 49248718 -168788440 - MIR SINE MIR -1 261 127 928 156 45 45 chr3 49249015 49249194 -168787964 - AluJb SINE Alu 0 312 134 1605 167 83 7 chr3 49249194 49249482 -168787676 - AluJb SINE Alu 0 312 3 241 238 0 0 chr3 49249701 49249764 -168787394 + L1MC4 LINE L1 6640 6702 -1340 244 256 47 0 chr3 49249767 49249853 -168787305 + L1MC4 LINE L1 6614 6703 -1339 192 152 0 0 chr3 49249854 49249887 -168787271 + (TA)n Simple_repeat Simple_repeat 1 33 0 324 294 94 6 chr3 49250829 49251009 -168786149 + MIR SINE MIR 60 255 -7 207 216 114 11 chr3 49252356 49252444 -168784714 - L2 LINE L2 -5 3267 3171 1373 140 19 8 chr3 49252501 49252661 -168784497 - L1MA4 LINE L1 -11 6289 6123 1965 180 0 3 chr3 49252661 49252966 -168784192 - 7SLRNA srpRNA srpRNA -16 304 1 1373 140 19 8 chr3 49252966 49253069 -168784089 - L1MA4 LINE L1 -177 6123 6023 201 196 0 0 chr3 49253411 49253462 -168783696 + (TG)n Simple_repeat Simple_repeat 2 52 0 581 278 125 9 chr3 49253593 49253809 -168783349 - MIR SINE MIR -6 256 16 657 219 169 0 chr3 49253815 49253975 -168783183 - MER5A DNA MER1_type 0 189 3 314 342 0 9 chr3 49254004 49254128 -168783030 - MIR SINE MIR -77 131 8 264 261 45 36 chr3 49255426 49255537 -168781621 - MIR SINE MIR -64 144 33 2279 99 3 0 chr3 49255866 49256158 -168781000 - AluSq SINE Alu -20 293 1 315 278 102 34 chr3 49257256 49257461 -168779697 + MIR SINE MIR 7 225 -37 1545 271 49 13 chr3 49257885 49258358 -168778800 + LTR16C LTR ERVL 1 490 -1 194 0 39 0 chr3 49259987 49260013 -168777145 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 516 330 43 5 chr3 49260031 49260219 -168776939 + MIR SINE MIR 5 199 -63 224 163 41 0 chr3 49260383 49260432 -168776726 + GA-rich Low_complexity Low_complexity 2 52 0 550 313 91 29 chr3 49261405 49261747 -168775411 + MLT1J2 LTR MaLR 85 447 -3 265 252 101 42 chr3 49264172 49264291 -168772867 + L2 LINE L2 3144 3269 -3 191 302 85 28 chr3 49264769 49264875 -168772283 + L2 LINE L2 3067 3178 -94 270 231 52 13 chr3 49265825 49265956 -168771202 + MIR SINE MIR 49 254 -8 223 328 59 17 chr3 49266026 49266145 -168771013 - MIR3 SINE MIR -70 138 15 192 349 24 0 chr3 49267289 49267372 -168769786 + MER5A DNA MER1_type 38 122 -67 1678 155 10 52 chr3 49267519 49267669 -168769489 - AluJo SINE Alu -16 296 164 2295 96 6 13 chr3 49267669 49267982 -168769176 - AluSq SINE Alu 0 313 3 1678 155 10 52 chr3 49267982 49268140 -168769018 - AluJo SINE Alu -148 164 1 965 197 61 5 chr3 49268199 49268397 -168768761 + MER3 DNA MER1_type 1 209 0 248 250 17 0 chr3 49268409 49268469 -168768689 - MIR3 SINE MIR -25 183 123 2102 107 62 0 chr3 49269456 49269746 -168767412 - AluY SINE Alu -3 308 1 21 57 0 0 chr3 49270629 49270664 -168766494 + AT_rich Low_complexity Low_complexity 1 35 0 441 299 65 93 chr3 49272096 49272474 -168764684 + L2 LINE L2 2842 3208 -64 2252 103 103 0 chr3 49272474 49272804 -168764354 + THE1B LTR MaLR 1 364 0 441 299 65 93 chr3 49272804 49272857 -168764301 + L2 LINE L2 3208 3261 -11 291 264 167 21 chr3 49272868 49273012 -168764146 - MIR SINE MIR -77 185 21 589 311 78 0 chr3 49274890 49275096 -168762062 - MIR SINE MIR -13 249 28 509 293 22 36 chr3 49275700 49275925 -168761233 + MLT1H LTR MaLR 30 251 -298 269 180 0 33 chr3 49276063 49276124 -168761034 + Tigger5 DNA MER2_type 20 78 -2245 * 1340 124 20 44 chr3 49276118 49276367 -168760791 + Tigger5 DNA MER2_type 2081 2323 0 * 2163 246 105 42 chr3 49276367 49277060 -168760098 + MER21B LTR ERV1 20 756 -107 441 305 34 15 chr3 49278503 49278705 -168758453 - MIR SINE MIR -24 238 30 414 0 0 0 chr3 49280402 49280448 -168756710 + (TG)n Simple_repeat Simple_repeat 2 47 0 193 232 18 18 chr3 49281473 49281529 -168755629 + MIR3 SINE MIR 148 203 -5 290 322 0 11 chr3 49281764 49281851 -168755307 + G-rich Low_complexity Low_complexity 6 91 0 2090 125 3 3 chr3 49282668 49282965 -168754193 - AluSq SINE Alu -16 297 1 341 269 56 68 chr3 49283040 49283202 -168753956 + L1MC4a LINE L1 4893 5052 -1094 2458 88 0 0 chr3 49283202 49283509 -168753649 - AluY SINE Alu -4 307 1 341 269 56 68 chr3 49283509 49283595 -168753563 + L1MC4a LINE L1 5052 5138 -1008 2113 158 18 0 chr3 49283639 49283980 -168753178 + MER7A DNA MER2_type 2 346 0 624 284 132 26 chr3 49284166 49284592 -168752566 + L1MC4a LINE L1 5381 5851 -1957 22 70 0 0 chr3 49284737 49284780 -168752378 + AT_rich Low_complexity Low_complexity 1 43 0 1829 134 76 25 chr3 49284785 49285142 -168752016 - THE1C LTR MaLR 0 375 1 225 308 130 41 chr3 49285157 49285326 -168751832 - MIR3 SINE MIR -6 202 19 1514 268 53 64 chr3 49287402 49288080 -168749078 + L1MC4a LINE L1 5145 5829 -317 315 0 0 0 chr3 49288080 49288115 -168749043 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 6099 28 34 0 chr3 49288123 49288839 -168748319 - L1PA4 LINE L1 0 6155 5416 1514 268 53 64 chr3 49288839 49288992 -168748166 + L1PA4 LINE L1 5249 5402 -744 2780 40 6 0 chr3 49289116 49289471 -168747687 + L1PA3 LINE L1 5820 6176 0 183 184 0 0 chr3 49289537 49289575 -168747583 + MIR SINE MIR 151 188 -74 822 219 74 28 chr3 49291192 49291407 -168745751 - MER96B DNA MER1_type? 0 417 193 22 35 0 0 chr3 49291522 49291551 -168745607 + AT_rich Low_complexity Low_complexity 1 29 0 44 20 0 0 chr3 49291896 49291947 -168745211 + AT_rich Low_complexity Low_complexity 1 51 0 300 176 40 0 chr3 49292220 49292294 -168744864 - L1MA4A LINE L1 -7 6296 6220 1066 101 0 0 chr3 49292391 49292529 -168744629 - L1PA15 LINE L1 -4 6161 6024 1074 230 47 81 chr3 49292916 49293061 -168744097 - MLT1H1 LTR MaLR -234 356 208 2496 157 78 29 chr3 49293061 49293507 -168743651 - MER70A LTR ERVL -2 470 3 1074 230 47 81 chr3 49293507 49293726 -168743432 - MLT1H1 LTR MaLR -382 208 1 552 266 91 7 chr3 49294468 49294622 -168742536 + MIR SINE MIR 63 229 -33 290 175 70 0 chr3 49294658 49294715 -168742443 + MIR SINE MIR 28 88 -174 3262 62 33 7 chr3 49294716 49295138 -168742020 - MLT2A1 LTR ERVL -10 434 2 184 228 53 0 chr3 49295139 49295196 -168741962 + MIR SINE MIR 77 136 -126 984 199 22 0 chr3 49295670 49295851 -168741307 + MER5A DNA MER1_type 4 188 -1 276 316 84 7 chr3 49296014 49296169 -168740989 - MIR SINE MIR -3 259 93 455 289 53 26 chr3 49296708 49296898 -168740260 - MIR SINE MIR -3 259 65 401 231 263 28 chr3 49297226 49297473 -168739685 + LTR33A LTR ERVL 104 408 -115 2666 26 0 10 chr3 49298018 49298322 -168738836 - AluY SINE Alu -10 301 1 357 285 45 39 chr3 49298380 49298559 -168738599 + L2 LINE L2 2271 2450 -864 183 388 71 0 chr3 49298563 49298648 -168738510 + L2 LINE L2 3143 3233 -39 240 248 172 21 chr3 49299001 49299146 -168738012 - MIR SINE MIR -25 237 71 318 247 22 0 chr3 49299299 49299388 -168737770 - L1ME4a LINE L1 -74 6047 5957 225 222 89 33 chr3 49300471 49300561 -168736597 - MIR3 SINE MIR -113 95 1 931 158 48 0 chr3 49301233 49301379 -168735779 + AluSq SINE Alu 137 289 -24 31006 51 1 1 chr3 49301538 49305335 -168731823 + L1P LINE L1 1 3797 -2349 368 340 0 0 chr3 49305335 49305438 -168731720 + L2 LINE L2 3205 3307 -6 205 313 84 12 chr3 49305966 49306049 -168731109 - MIR SINE MIR -74 188 100 3580 108 7 32 chr3 49306311 49306867 -168730291 - L1MA5A LINE L1 -5 6292 5751 1813 234 30 25 chr3 49306893 49307226 -168729932 - L1ME1 LINE L1 -6 6160 5823 2025 155 0 0 chr3 49307226 49307522 -168729636 - AluJo SINE Alu -16 296 1 1813 234 30 25 chr3 49307522 49307663 -168729495 - L1ME1 LINE L1 -343 5823 5684 669 151 0 0 chr3 49307675 49307768 -168729390 - LTR47A LTR ERVL -86 366 274 3011 129 23 14 chr3 49307768 49308405 -168728753 - L1ME1 LINE L1 -475 5890 5354 2859 116 12 21 chr3 49308405 49308835 -168728323 - L1MA2 LINE L1 0 6304 5879 408 19 0 56 chr3 49308835 49308889 -168728269 + L1MA1 LINE L1 5791 5841 -461 * 4328 182 15 0 chr3 49308879 49309683 -168727475 - L1 LINE L1 -774 5372 4557 2264 95 7 3 chr3 49309690 49309995 -168727163 - AluSq SINE Alu -7 306 1 1554 197 25 0 chr3 49310117 49310401 -168726757 - AluJb SINE Alu -21 291 1 400 221 84 0 chr3 49310763 49310858 -168726300 + L2 LINE L2 3211 3313 0 836 76 68 8 chr3 49311299 49311431 -168725727 - L1MA7 LINE L1 0 6291 6152 633 266 0 19 chr3 49311667 49311825 -168725333 - MIR SINE MIR -48 214 60 324 264 0 0 chr3 49311875 49311962 -168725196 + MIR SINE MIR 176 262 0 307 300 70 30 chr3 49312372 49312572 -168724586 + L1MC4a LINE L1 5694 5901 -1907 297 302 88 19 chr3 49312592 49312751 -168724407 - L2 LINE L2 -20 3293 3124 580 271 58 10 chr3 49312814 49313021 -168724137 - L2 LINE L2 -185 3128 2912 252 273 0 0 chr3 49313347 49313435 -168723723 + (CA)n Simple_repeat Simple_repeat 2 89 0 295 262 126 39 chr3 49313579 49313785 -168723373 - HAL1 LINE L1 0 2507 2284 1408 291 106 37 chr3 49314472 49315470 -168721688 - HAL1 LINE L1 -629 1878 812 2239 179 62 7 chr3 49315707 49316110 -168721048 - MSTB LTR MaLR -1 425 1 2220 112 0 25 chr3 49316721 49317035 -168720123 - AluSx SINE Alu -6 306 1 927 247 104 19 chr3 49317282 49317648 -168719510 - MLT1H LTR MaLR -107 442 3 203 299 195 11 chr3 49319344 49319431 -168717727 + L2 LINE L2 3133 3235 -37 1841 168 3 7 chr3 49319479 49319771 -168717387 + AluJb SINE Alu 1 291 -21 588 247 6 67 chr3 49320102 49320280 -168716878 + MER5B DNA MER1_type 7 173 -5 2263 95 3 3 chr3 49320504 49320798 -168716360 + AluSc SINE Alu 1 294 -15 529 272 87 12 chr3 49320980 49321153 -168716005 - L2 LINE L2 0 3313 3128 1586 125 52 16 chr3 49321185 49321433 -168715725 - L1PA10 LINE L1 0 6168 5912 208 196 22 0 chr3 49321588 49321634 -168715524 + T-rich Low_complexity Low_complexity 5 51 0 43818 32 21 3 chr3 49321635 49327674 -168709484 - L1PA3 LINE L1 0 6155 1 315 349 93 33 chr3 49328393 49328725 -168708433 + L2 LINE L2 2623 2974 -340 360 260 30 80 chr3 49328809 49329009 -168708149 + L2 LINE L2 3124 3313 0 180 277 43 0 chr3 49329027 49329074 -168708084 - MIR SINE MIR -165 97 49 3649 125 14 6 chr3 49330004 49330515 -168706643 + MLT2B2 LTR ERVL 1 515 0 256 362 53 5 chr3 49330545 49330733 -168706425 + L2 LINE L2 2152 2348 -966 1247 176 31 5 chr3 49330998 49331220 -168705938 - MLT2C1 LTR ERVL -88 309 82 2223 136 8 17 chr3 49331321 49331675 -168705483 + THE1C LTR MaLR 25 375 0 1734 121 49 0 chr3 49331682 49331947 -168705211 + MSTA LTR MaLR 151 428 0 379 262 87 94 chr3 49331972 49332418 -168704740 + HAL1 LINE L1 2063 2505 -2 2429 90 0 0 chr3 49333491 49333791 -168703367 - AluSp SINE Alu -11 302 3 443 219 51 112 chr3 49334274 49334489 -168702669 - MER112 DNA MER1_type -58 202 1 1514 281 153 7 chr3 49334801 49335498 -168701660 + HAL1 LINE L1 138 936 -1571 1056 247 128 11 chr3 49335515 49335992 -168701166 + HAL1 LINE L1 993 1525 -982 784 246 105 20 chr3 49335998 49336351 -168700807 + HAL1 LINE L1 2125 2507 0 293 305 37 58 chr3 49337758 49337948 -168699210 + MIR SINE MIR 70 255 -7 300 91 0 0 chr3 49338328 49338372 -168698786 + (CA)n Simple_repeat Simple_repeat 2 45 0 351 0 0 0 chr3 49338489 49338528 -168698630 + (CA)n Simple_repeat Simple_repeat 2 40 0 772 241 121 0 chr3 49339893 49340125 -168697033 + MIR SINE MIR 2 261 -1 238 345 44 9 chr3 49340921 49341034 -168696124 + MIR SINE MIR 20 136 -72 291 259 19 28 chr3 49341340 49341448 -168695710 + GA-rich Low_complexity Low_complexity 5 111 0 242 228 35 0 chr3 49341490 49341547 -168695611 + GA-rich Low_complexity Low_complexity 3 61 0 860 294 144 32 chr3 49342097 49342604 -168694554 + MLT1K LTR MaLR 25 588 0 298 314 35 0 chr3 49342925 49343011 -168694147 + MIR SINE MIR 103 191 -71 272 307 113 38 chr3 49343216 49343428 -168693730 - L2 LINE L2 -337 2977 2750 1668 180 23 58 chr3 49343687 49344032 -168693126 + LTR32 LTR ERVL 20 352 -119 843 123 32 39 chr3 49344090 49344244 -168692914 + LTR32 LTR ERVL 319 471 0 388 343 67 0 chr3 49344473 49344651 -168692507 + MIR SINE MIR 28 217 -45 180 287 81 11 chr3 49345830 49345917 -168691241 + L2 LINE L2 2349 2441 -873 237 329 28 42 chr3 49347853 49347996 -168689162 + MIR SINE MIR 106 246 -16 462 300 46 0 chr3 49348677 49348807 -168688351 + L2 LINE L2 3137 3272 0 836 263 24 0 chr3 49349490 49349695 -168687463 - MER63A DNA MER1_type 0 210 1 222 332 101 5 chr3 49349893 49350092 -168687066 - MIR SINE MIR 0 262 45 275 189 68 0 chr3 49351267 49351341 -168685817 - L1MDa LINE L1 -4491 2049 1971 2187 103 10 0 chr3 49351341 49351632 -168685526 + AluSx SINE Alu 1 294 -18 323 262 60 0 chr3 49351662 49351830 -168685328 + (TA)n Simple_repeat Simple_repeat 1 178 0 417 214 46 12 chr3 49351855 49352028 -168685130 + (TA)n Simple_repeat Simple_repeat 2 180 0 326 244 60 0 chr3 49352049 49352217 -168684941 + (TA)n Simple_repeat Simple_repeat 2 179 0 365 226 60 0 chr3 49352233 49352401 -168684757 + (TA)n Simple_repeat Simple_repeat 2 179 0 265 284 0 0 chr3 49352545 49352612 -168684546 - L1MDa LINE L1 -6002 528 462 314 296 71 19 chr3 49352762 49353029 -168684129 - HAL1 LINE L1 -872 1635 1355 942 224 113 19 chr3 49353275 49353637 -168683521 - L1MC4 LINE L1 -163 7879 7484 200 172 86 69 chr3 49353730 49353788 -168683370 + MIR SINE MIR 38 96 -112 21 100 0 0 chr3 49354185 49354255 -168682903 + AT_rich Low_complexity Low_complexity 1 70 0 2918 122 8 20 chr3 49354282 49355142 -168682016 + L1P4 LINE L1 4815 5664 -497 657 108 50 12 chr3 49355341 49355930 -168681228 + (TA)n Simple_repeat Simple_repeat 1 611 0 728 121 0 0 chr3 49355930 49356029 -168681129 - AluSx SINE Alu -18 292 194 1119 116 0 0 chr3 49356030 49356176 -168680982 - AluSx SINE Alu -167 146 1 463 291 55 94 chr3 49358206 49358481 -168678677 + L2 LINE L2 3002 3265 -7 2206 155 73 14 chr3 49359192 49360096 -168677062 - Looper DNA T2_type -507 1051 6 244 333 97 59 chr3 49360292 49360478 -168676680 + L2 LINE L2 2895 3087 -185 1824 60 0 0 chr3 49360649 49360865 -168676293 - AluY SINE Alu -95 216 1 923 199 80 8 chr3 49360865 49361116 -168676042 - L1MDa LINE L1 -4601 1939 1671 386 299 79 16 chr3 49361516 49361643 -168675515 + L2 LINE L2 3136 3270 -2 1746 129 4 4 chr3 49362375 49362655 -168674503 - L1MA7 LINE L1 -549 5742 5463 2759 128 28 0 chr3 49362658 49363128 -168674030 + L1MA7 LINE L1 5764 6246 -45 316 191 52 73 chr3 49363134 49363270 -168673888 + L1MEd LINE L1 935 1067 -5052 * 1132 278 99 14 chr3 49363269 49363999 -168673159 + L1MEd LINE L1 2409 3200 -2929 636 280 156 43 chr3 49364204 49364847 -168672311 + L1MEd LINE L1 3543 4257 -1872 240 299 68 34 chr3 49365427 49365544 -168671614 - MER94 DNA DNA -7 127 7 2537 152 28 72 chr3 49366239 49366943 -168670215 + pTR5 LTR ERV1 743 1415 -1023 3867 93 2 0 chr3 49367044 49367580 -168669578 + L1PA14 LINE L1 5621 6157 -4 2144 104 30 3 chr3 49367770 49368044 -168669114 + AluSq SINE Alu 1 285 -28 198 0 0 0 chr3 49368044 49368066 -168669092 + (TC)n Simple_repeat Simple_repeat 1 22 0 2144 104 30 3 chr3 49368066 49368088 -168669070 + AluSq SINE Alu 285 305 -8 21 0 0 0 chr3 49368498 49368519 -168668639 + AT_rich Low_complexity Low_complexity 1 21 0 469 168 10 50 chr3 49368519 49368620 -168668538 + LTR52 LTR ERVL 16 112 -309 6521 45 2 0 chr3 49369076 49369874 -168667284 + L1PA7 LINE L1 5351 6150 -4 315 274 29 59 chr3 49369948 49370050 -168667108 + L1ME3A LINE L1 5968 6066 -104 410 267 150 27 chr3 49370674 49370861 -168666297 - MIR SINE MIR -35 227 18 238 286 163 10 chr3 49371652 49371750 -168665408 - MIR SINE MIR 0 262 150 598 265 7 0 chr3 49371955 49372106 -168665052 + MIR SINE MIR 97 248 -14 2067 158 14 3 chr3 49373893 49374255 -168662903 - MLT2D LTR ERVL -48 366 1 209 378 37 18 chr3 49374999 49375163 -168661995 + MIR SINE MIR 76 242 -20 325 215 70 51 chr3 49375567 49375725 -168661433 - L1ME4a LINE L1 -1 6054 5894 299 275 115 36 chr3 49375743 49376107 -168661051 - L1ME4a LINE L1 -211 5844 5452 2969 127 2 8 chr3 49376289 49376771 -168660387 + L1MA4 LINE L1 5820 6298 -2 579 130 22 0 chr3 49377046 49377138 -168660020 - Tigger1 DNA MER2_type -1 2417 2324 8944 115 24 19 chr3 49377241 49378693 -168658465 - Tigger1 DNA MER2_type -958 1460 2 22 0 0 0 chr3 49379466 49379488 -168657670 + AT_rich Low_complexity Low_complexity 1 22 0 251 245 235 0 chr3 49381441 49381543 -168655615 - L2 LINE L2 -13 3259 3134 269 239 62 8 chr3 49384607 49384737 -168652421 + (TTA)n Simple_repeat Simple_repeat 3 139 0 1530 175 28 47 chr3 49384745 49385125 -168652033 + MER47B DNA MER2_type 4 417 -1 191 149 0 21 chr3 49385216 49385263 -168651895 + (TTTTTA)n Simple_repeat Simple_repeat 1 46 0 325 313 48 12 chr3 49385345 49385511 -168651647 - L1ME4a LINE L1 -902 5178 5007 189 0 0 0 chr3 49385565 49385586 -168651572 + (T)n Simple_repeat Simple_repeat 1 21 0 345 242 32 70 chr3 49385618 49385804 -168651354 - L1ME4a LINE L1 -195 5926 5748 2529 268 80 55 chr3 49385849 49386863 -168650295 - L1MC4 LINE L1 -5 8037 6999 6791 4 0 2 chr3 49386901 49387697 -168649461 - L1HS LINE L1 -1 6154 5361 1217 212 103 22 chr3 49387738 49388146 -168649012 + MLT1C LTR MaLR 28 467 0 218 352 163 35 chr3 49388179 49388554 -168648604 + L2 LINE L2 1701 2123 -1191 385 305 65 28 chr3 49389251 49389713 -168647445 - L1ME4a LINE L1 -2752 3328 2850 360 275 90 30 chr3 49389719 49389886 -168647272 - L1ME4a LINE L1 -3294 2786 2610 1021 203 102 102 chr3 49389909 49390390 -168646768 - LTR34 LTR ERV1 -4 695 137 1359 144 92 66 chr3 49390411 49390764 -168646394 + MER4A LTR ERV1 1 210 -255 420 353 36 12 chr3 49391093 49391342 -168645816 - L1ME4a LINE L1 -5814 256 2 314 292 72 19 chr3 49391491 49391755 -168645403 - HAL1 LINE L1 -872 1635 1358 220 330 38 19 chr3 49392233 49392339 -168644819 + MIR SINE MIR 72 179 -83 703 168 25 0 chr3 49392721 49392840 -168644318 - FLAM_C SINE Alu -11 122 1 280 74 0 37 chr3 49392895 49392949 -168644209 + (TA)n Simple_repeat Simple_repeat 2 53 0 25 75 0 0 chr3 49392954 49393007 -168644151 + AT_rich Low_complexity Low_complexity 1 53 0 657 203 28 40 chr3 49393778 49393955 -168643203 + MER97a DNA MER1_type? 4 178 -716 421 300 103 53 chr3 49394079 49394858 -168642300 - L1ME4a LINE L1 -523 5639 4949 735 289 89 48 chr3 49394962 49395862 -168641296 - L1ME4a LINE L1 -1314 4832 3885 1873 150 9 34 chr3 49395862 49396182 -168640976 - AluJb SINE Alu 0 312 1 735 289 89 48 chr3 49396182 49396285 -168640873 - L1ME4a LINE L1 -2261 3885 3788 801 289 141 55 chr3 49396313 49397072 -168640086 - L1ME4a LINE L1 -2446 3700 2877 239 309 0 0 chr3 49397177 49397261 -168639897 - L1ME4a LINE L1 -3387 2759 2676 2041 128 6 51 chr3 49397627 49397978 -168639180 - MER1B DNA MER1_type 0 337 3 222 136 0 23 chr3 49398872 49398916 -168638242 + (TTTTG)n Simple_repeat Simple_repeat 5 47 0 22 0 0 0 chr3 49399047 49399069 -168638089 + AT_rich Low_complexity Low_complexity 1 22 0 1242 102 112 10 chr3 49400759 49400965 -168636193 + MER30 DNA MER1_type 4 230 0 885 40 97 8 chr3 49401628 49401752 -168635406 - MER85 DNA T2_type -4 135 1 200 341 154 0 chr3 49403250 49403341 -168633817 + MIR SINE MIR 20 124 -138 2133 114 0 7 chr3 49403488 49403817 -168633341 - AluSc SINE Alu 0 327 1 862 122 7 0 chr3 49404147 49404286 -168632872 + pTR5 LTR ERV1 253 392 -2046 248 304 37 60 chr3 49404462 49404679 -168632479 + MLT1J2 LTR MaLR 1 212 -238 533 232 84 26 chr3 49404738 49404893 -168632265 - MER5B DNA MER1_type -14 164 1 1749 161 16 48 chr3 49405033 49405344 -168631814 - AluJb SINE Alu -11 301 1 1048 228 57 0 chr3 49405591 49405819 -168631339 - MIR SINE MIR -1 261 21 279 266 18 28 chr3 49405854 49405963 -168631195 - L1MC/D LINE L1 -2007 5801 5694 270 280 49 42 chr3 49406044 49406187 -168630971 - L1MC/D LINE L1 -2230 5578 5435 941 126 41 6 chr3 49406356 49406596 -168630562 - L1MC/D LINE L1 -743 5403 5186 430 243 30 38 chr3 49406614 49406877 -168630281 - L1M4 LINE L1 -2993 3153 2893 2291 86 0 0 chr3 49406904 49407184 -168629974 + AluY SINE Alu 17 296 -15 186 349 186 8 chr3 49407248 49407377 -168629781 + MIR3 SINE MIR 17 168 -40 2471 172 58 33 chr3 49407378 49407947 -168629211 + LTR60 LTR ERV1 1 583 -3 947 245 15 18 chr3 49408392 49408731 -168628427 + L1M4 LINE L1 2659 2996 -3150 2075 136 10 3 chr3 49408755 49409065 -168628093 + AluSx SINE Alu 1 312 0 247 264 28 47 chr3 49409145 49409251 -168627907 + L2 LINE L2 1141 1244 -2070 255 309 136 26 chr3 49409521 49409941 -168627217 + L2 LINE L2 1403 1868 -1446 1126 153 115 23 chr3 49410476 49410739 -168626419 - MER1B DNA MER1_type 0 339 2 323 177 16 0 chr3 49411398 49411460 -168625698 + Charlie3 DNA MER1_type 164 226 -2484 * 510 175 0 10 chr3 49411458 49411555 -168625603 + Charlie3 DNA MER1_type 2617 2712 0 1747 131 21 3 chr3 49411560 49411850 -168625308 + L1MB3 LINE L1 5888 6182 -1 356 309 48 36 chr3 49412997 49413249 -168623909 + L1ME LINE L1 5531 5785 -336 182 282 0 0 chr3 49413444 49413483 -168623675 + MIR SINE MIR 216 254 -8 260 269 114 54 chr3 49413750 49413917 -168623241 - MER20B DNA MER1_type -606 177 1 328 248 95 38 chr3 49415375 49415480 -168621678 - L2 LINE L2 -17 3255 3145 1735 199 66 35 chr3 49415823 49416275 -168620883 + MLT1C LTR MaLR 1 466 -1 324 186 147 10 chr3 49416662 49416764 -168620394 - MER106B DNA MER1_type 0 1059 944 264 234 31 0 chr3 49416896 49416960 -168620198 - MER106A DNA MER1_type -168 68 3 393 228 61 18 chr3 49416961 49417075 -168620083 + MIR SINE MIR 30 148 -114 5008 154 17 11 chr3 49467280 49467835 -168569323 - L1 LINE L1 -1810 4336 3773 566 38 0 13 chr3 49467835 49467914 -168569244 - L1PA4 LINE L1 0 6155 6078 5008 154 17 11 chr3 49467914 49468240 -168568918 - L1 LINE L1 -2373 3773 3450 467 187 78 42 chr3 49468266 49468411 -168568747 - Charlie4 DNA MER1_type -5 1956 1803 2716 112 0 3 chr3 49468411 49468776 -168568382 - THE1B LTR MaLR 0 364 1 467 187 78 42 chr3 49468776 49468796 -168568362 - Charlie4 DNA MER1_type -158 1803 1785 993 99 0 0 chr3 49468798 49468950 -168568208 + (TA)n Simple_repeat Simple_repeat 2 153 0 1097 76 0 0 chr3 49469135 49469266 -168567892 - AluSq/x SINE Alu -181 131 1 205 275 187 0 chr3 49469723 49469814 -168567344 + MIR SINE MIR 32 139 -123 325 303 112 4 chr3 49469991 49470060 -168567098 - L1ME4a LINE L1 -140 5981 5921 1542 159 4 16 chr3 49470060 49470311 -168566847 - AluJb SINE Alu -64 248 1 325 303 112 4 chr3 49470311 49470482 -168566676 - L1ME4a LINE L1 -200 5921 5715 183 80 0 0 chr3 49471607 49471632 -168565526 + (TTA)n Simple_repeat Simple_repeat 3 27 0 258 32 0 0 chr3 49471725 49471756 -168565402 + (CATAT)n Simple_repeat Simple_repeat 3 33 0 199 261 198 36 chr3 49471759 49471870 -168565288 - MIR SINE MIR -126 136 8 195 42 0 0 chr3 49472108 49472132 -168565026 + (A)n Simple_repeat Simple_repeat 1 24 0 23 0 0 53 chr3 49473235 49473256 -168563902 + AT_rich Low_complexity Low_complexity 1 21 -15 2442 84 0 0 chr3 49473256 49473553 -168563605 + AluY SINE Alu 1 297 -14 23 0 0 53 chr3 49473553 49473569 -168563589 + AT_rich Low_complexity Low_complexity 21 36 0 1365 139 0 5 chr3 49473738 49473946 -168563212 - MER4E LTR ERV1 0 766 560 2388 121 16 75 chr3 49474121 49474561 -168562597 - MER4B LTR ERV1 -196 414 1 208 148 37 19 chr3 49475092 49475146 -168562012 + (TTAAA)n Simple_repeat Simple_repeat 4 58 0 1690 155 55 10 chr3 49475605 49475896 -168561262 + AluJo SINE Alu 3 306 -6 2537 243 81 96 chr3 49475999 49477077 -168560081 + MER52A LTR ERV1 660 1721 -34 354 210 0 0 chr3 49477098 49477160 -168559998 - MER50 LTR ERV1 -23 711 650 1010 276 83 24 chr3 49477613 49478073 -168559085 + LTR16C LTR ERVL 5 491 0 938 287 29 4 chr3 49478190 49478462 -168558696 - Charlie8 DNA MER1_type -2138 279 1 363 350 128 14 chr3 49478465 49478825 -168558333 - L2 LINE L2 -1387 1927 1527 24 0 0 0 chr3 49478915 49478939 -168558219 + AT_rich Low_complexity Low_complexity 1 24 0 2207 124 0 0 chr3 49478939 49479229 -168557929 + AluSx SINE Alu 4 293 -19 324 248 26 0 chr3 49479253 49479366 -168557792 - L1ME4a LINE L1 0 6121 6006 1605 201 7 7 chr3 49479366 49479665 -168557493 - MER41D LTR ERV1 0 557 259 862 119 0 0 chr3 49479665 49479783 -168557375 + FLAM_C SINE Alu 23 140 -3 1662 154 26 0 chr3 49479787 49480054 -168557104 - MER41D LTR ERV1 -283 274 1 296 295 25 0 chr3 49480077 49480199 -168556959 - L1ME4a LINE L1 -179 5942 5818 1237 252 106 18 chr3 49480214 49480704 -168556454 + MLT1G1 LTR MaLR 12 536 -54 887 251 66 19 chr3 49480717 49480988 -168556170 - L1ME4a LINE L1 -318 5803 5520 2125 159 73 10 chr3 49481404 49481813 -168555345 - L1MB5 LINE L1 -9 6165 5731 2220 103 11 0 chr3 49481923 49482205 -168554953 - AluSx SINE Alu -27 285 1 597 256 12 12 chr3 49483366 49483534 -168553624 - MLT1K LTR MaLR -2 586 419 872 129 0 48 chr3 49483751 49483898 -168553260 + MLT1A1 LTR MaLR 1 140 -225 1676 121 12 12 chr3 49483998 49484255 -168552903 + AluSx SINE Alu 36 292 -20 573 15 0 0 chr3 49484255 49484321 -168552837 + (CATAA)n Simple_repeat Simple_repeat 2 67 0 3049 128 35 48 chr3 49484323 49484776 -168552382 + L1MA9 LINE L1 5487 5932 -380 2089 106 0 18 chr3 49484776 49485060 -168552098 + AluSc SINE Alu 1 279 -30 3049 128 35 48 chr3 49485060 49485184 -168551974 + L1MA9 LINE L1 5932 6056 -256 26 0 0 0 chr3 49485198 49485224 -168551934 + AT_rich Low_complexity Low_complexity 1 26 0 1878 156 3 37 chr3 49485710 49485843 -168551315 + AluJo SINE Alu 1 137 -175 2073 111 0 63 chr3 49485843 49486175 -168550983 + AluSq SINE Alu 1 311 -2 1878 156 3 37 chr3 49486175 49486362 -168550796 + AluJo SINE Alu 137 310 -2 2178 112 3 0 chr3 49486495 49486781 -168550377 + AluSx SINE Alu 1 287 -25 1430 42 0 6 chr3 49486781 49486949 -168550209 + AluY SINE Alu 133 299 -12 1897 136 21 0 chr3 49486993 49487272 -168549886 + AluSx SINE Alu 7 291 -21 2278 74 0 74 chr3 49487276 49487599 -168549559 + AluY SINE Alu 1 299 -12 416 216 114 51 chr3 49487651 49487827 -168549331 + L1MC4a LINE L1 4475 4661 -1485 390 254 104 115 chr3 49487944 49488240 -168548918 + L1MC4a LINE L1 5410 5701 -2107 1839 107 13 88 chr3 49488240 49488558 -168548600 + AluSg SINE Alu 1 294 -16 390 254 104 115 chr3 49488558 49488705 -168548453 + L1MC4a LINE L1 5701 5848 -1960 1973 220 43 25 chr3 49488705 49489158 -168548000 + MLT2B2 LTR ERVL 15 548 -6 228 274 131 0 chr3 49489684 49489768 -168547390 - MIR SINE MIR -41 221 127 868 107 74 0 chr3 49489860 49489982 -168547176 - AluSg SINE Alu -179 131 1 2222 100 3 0 chr3 49490182 49490471 -168546687 - AluSx SINE Alu -22 290 1 248 311 115 21 chr3 49490755 49490990 -168546168 + L2 LINE L2 1336 1592 -1722 193 291 128 0 chr3 49491376 49491462 -168545696 - MIR SINE MIR -126 136 40 1873 136 42 0 chr3 49492120 49492406 -168544752 + AluSx SINE Alu 1 298 -14 691 201 258 47 chr3 49492522 49492820 -168544338 - MER46B DNA MER2_type 0 236 1 2134 121 3 3 chr3 49492874 49493171 -168543987 + AluSx SINE Alu 1 297 -15 1881 138 47 0 chr3 49493171 49493467 -168543691 + AluSg SINE Alu 1 310 0 2475 73 0 0 chr3 49493704 49494006 -168543152 + AluY SINE Alu 1 302 -9 288 0 0 0 chr3 49494318 49494350 -168542808 + (CAG)n Simple_repeat Simple_repeat 2 33 0 807 145 30 0 chr3 49495174 49495305 -168541853 - AluJb SINE Alu -19 293 159 1701 123 120 21 chr3 49495422 49495706 -168541452 + AluSx SINE Alu 1 312 0 1593 197 35 7 chr3 49495761 49496051 -168541107 - AluSx SINE Alu -8 304 7 21 0 0 0 chr3 49496107 49496128 -168541030 + AT_rich Low_complexity Low_complexity 1 21 0 2498 52 7 19 chr3 49496422 49496729 -168540429 - AluY SINE Alu -8 303 1 1735 134 16 42 chr3 49497097 49497403 -168539755 - AluJb SINE Alu -8 304 7 263 203 17 34 chr3 49498013 49498072 -168539086 - MIR SINE MIR -21 241 184 204 40 0 0 chr3 49499053 49499078 -168538080 + (CGTG)n Simple_repeat Simple_repeat 3 27 0 502 189 46 0 chr3 49499361 49499512 -168537646 - L1MC4 LINE L1 -1 8041 7846 2188 98 0 7 chr3 49499514 49499809 -168537349 - AluSg SINE Alu -16 294 2 870 186 6 6 chr3 49499815 49499971 -168537187 - FRAM SINE Alu -20 156 1 747 212 46 54 chr3 49499989 49500230 -168536928 - L1MC4 LINE L1 -205 7837 7599 285 193 241 0 chr3 49500257 49500340 -168536818 - L1MC4 LINE L1 -524 7518 7416 1991 113 0 77 chr3 49500397 49500724 -168536434 - AluSg SINE Alu -8 302 1 970 203 18 0 chr3 49500737 49500900 -168536258 - FAM SINE Alu -8 167 2 575 314 153 25 chr3 49501047 49501679 -168535479 + L2 LINE L2 2593 3309 -4 1199 200 114 64 chr3 49501720 49502101 -168535057 + L1ME3A LINE L1 5677 6087 -83 825 126 7 22 chr3 49502101 49502236 -168534922 - FLAM_A SINE Alu 0 133 1 1199 200 114 64 chr3 49502236 49502320 -168534838 + L1ME3A LINE L1 6087 6165 -5 231 291 87 16 chr3 49502327 49502454 -168534704 - MER5A DNA MER1_type -52 137 2 209 307 84 50 chr3 49502475 49502654 -168534504 + L2 LINE L2 2687 2871 -443 3202 153 123 12 chr3 49503892 49504494 -168532664 - LTR65 LTR ERV1 0 669 1 324 0 0 0 chr3 49504857 49504893 -168532265 + (TG)n Simple_repeat Simple_repeat 1 36 0 1729 134 56 21 chr3 49504942 49505226 -168531932 - AluJb SINE Alu -13 299 6 318 247 26 0 chr3 49505399 49505476 -168531682 + L2 LINE L2 3235 3313 0 1405 215 138 40 chr3 49505866 49506513 -168530645 - L2 LINE L2 0 3313 2616 771 219 56 30 chr3 49506759 49507061 -168530097 - L1MC5 LINE L1 -34 7927 7618 549 212 152 86 chr3 49507263 49507461 -168529697 - MIR SINE MIR -36 226 16 195 69 0 0 chr3 49507660 49507689 -168529469 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 3876 89 14 23 chr3 49507696 49507859 -168529299 - L1MA2 LINE L1 0 6304 6141 2518 72 0 0 chr3 49507859 49508165 -168528993 - AluY SINE Alu -5 306 1 3876 89 14 23 chr3 49508165 49508561 -168528597 - L1MA2 LINE L1 -163 6141 5750 1783 231 116 49 chr3 49508693 49508830 -168528328 + L2 LINE L2 2358 2484 -829 2053 110 3 7 chr3 49508830 49509156 -168528002 - AluSx SINE Alu 0 325 1 1783 231 116 49 chr3 49509156 49509312 -168527846 + L2 LINE L2 2484 2628 -685 1912 238 49 55 chr3 49509312 49509909 -168527249 + MLT1E LTR MaLR 1 593 0 1783 231 116 49 chr3 49509909 49510491 -168526667 + L2 LINE L2 2628 3310 -3 1342 187 234 16 chr3 49510900 49511310 -168525848 - MER52A LTR ERV1 -1146 609 1 25 0 0 0 chr3 49511550 49511575 -168525583 + AT_rich Low_complexity Low_complexity 1 25 0 702 259 152 45 chr3 49511880 49512281 -168524877 - MLT1J LTR MaLR -46 465 22 770 90 17 56 chr3 49512623 49512801 -168524357 + (TTTC)n Simple_repeat Simple_repeat 2 172 0 1331 100 0 62 chr3 49512805 49513015 -168524143 - AluSg SINE Alu -113 197 1 1990 107 67 0 chr3 49513041 49513311 -168523847 - AluSx SINE Alu -24 288 1 2090 135 3 0 chr3 49513321 49513632 -168523526 - AluSx SINE Alu 0 312 1 1856 144 7 23 chr3 49513775 49514074 -168523084 - AluJb SINE Alu -7 305 12 1250 229 31 10 chr3 49514077 49514369 -168522789 - L1ME3 LINE L1 -89 6073 5776 1212 155 0 18 chr3 49514369 49514620 -168522538 - AluJo SINE Alu -17 295 1 6791 34 1 1 chr3 49514651 49515440 -168521718 - L1PA5 LINE L1 0 6154 5366 2325 222 94 67 chr3 49515487 49516238 -168520920 - HAL1 LINE L1 -689 1818 1036 779 175 40 0 chr3 49516238 49516364 -168520794 + FLAM_A SINE Alu 1 131 -2 2325 222 94 67 chr3 49516364 49516522 -168520636 - HAL1 LINE L1 -1471 1036 884 397 274 34 0 chr3 49516591 49516708 -168520450 + MIR SINE MIR 142 262 0 256 206 8 119 chr3 49516715 49516841 -168520317 - L1ME LINE L1 -299 5822 5711 1557 177 3 62 chr3 49516907 49517212 -168519946 - AluJo SINE Alu -23 289 3 411 224 10 20 chr3 49517216 49517314 -168519844 - L1MC5 LINE L1 -44 7917 7821 1120 165 83 32 chr3 49517449 49517506 -168519652 - MER33 DNA MER1_type -2297 288 235 1664 183 3 18 chr3 49517506 49517812 -168519346 - AluJo SINE Alu 0 302 1 1120 165 83 32 chr3 49517812 49518031 -168519127 - MER33 DNA MER1_type -2350 235 1 412 152 22 22 chr3 49518043 49518135 -168519023 - L1MC5 LINE L1 -180 7781 7690 299 365 30 18 chr3 49518118 49518285 -168518873 - L1ME LINE L1 -444 5677 5509 * 609 209 96 34 chr3 49518507 49518684 -168518474 - MLT1D LTR MaLR -111 394 207 732 183 30 23 chr3 49518765 49518922 -168518236 + FLAM_A SINE Alu 1 133 0 248 28 56 0 chr3 49519118 49519154 -168518004 + (TTTTC)n Simple_repeat Simple_repeat 3 40 0 2218 121 0 13 chr3 49519157 49519472 -168517686 - AluSx SINE Alu 0 312 2 812 258 122 25 chr3 49519487 49519858 -168517300 - HAL1 LINE L1 -1677 830 496 2230 94 7 29 chr3 49519858 49520167 -168516991 - AluSg SINE Alu -8 302 1 812 258 122 25 chr3 49520167 49520421 -168516737 - HAL1 LINE L1 -2011 496 98 1337 282 114 19 chr3 49520457 49521286 -168515872 + L2 LINE L2 2353 3313 0 317 314 24 40 chr3 49521318 49521442 -168515716 - MIR SINE MIR -133 129 8 346 240 29 0 chr3 49521442 49521546 -168515612 + L1ME4a LINE L1 5820 5926 -195 243 0 0 0 chr3 49521614 49521641 -168515517 + (TA)n Simple_repeat Simple_repeat 2 28 0 2446 87 10 0 chr3 49521641 49521951 -168515207 - AluSp SINE Alu 0 313 1 494 252 68 56 chr3 49521976 49522122 -168515036 - L1MC5 LINE L1 -45 7916 7773 1664 195 59 44 chr3 49522122 49522512 -168514646 + MLT2C1 LTR ERVL 1 396 -1 494 252 68 56 chr3 49522512 49522559 -168514599 - L1MC5 LINE L1 -188 7773 7728 2054 113 66 60 chr3 49522559 49522894 -168514264 + MER1B DNA MER1_type 1 337 0 494 252 68 56 chr3 49522894 49522949 -168514209 - L1MC5 LINE L1 -233 7728 7664 2034 136 0 3 chr3 49522961 49523248 -168513910 - AluSx SINE Alu -26 286 1 234 129 157 71 chr3 49523252 49523322 -168513836 - L1MC5 LINE L1 -283 7678 7603 247 369 39 10 chr3 49523469 49523572 -168513586 + L2 LINE L2 3167 3272 0 323 313 159 11 chr3 49523598 49523780 -168513378 - MIR SINE MIR -6 256 48 1804 172 17 96 chr3 49523897 49524303 -168512855 + MLT1A2 LTR MaLR 1 374 0 2089 89 30 0 chr3 49524427 49524734 -168512424 + AluSg SINE Alu 1 315 0 1550 266 104 9 chr3 49524748 49525654 -168511504 - L1ME3 LINE L1 -332 5899 4896 2473 207 73 13 chr3 49525960 49526492 -168510666 - MLT1E2 LTR MaLR 0 626 63 270 0 0 0 chr3 49526605 49526635 -168510523 + (TG)n Simple_repeat Simple_repeat 1 30 0 * 288 0 0 0 chr3 49526634 49526666 -168510492 + (GA)n Simple_repeat Simple_repeat 1 32 0 1675 163 4 11 chr3 49526668 49526944 -168510214 - AluJb SINE Alu -38 274 1 237 191 0 0 chr3 49529288 49529335 -168507823 - MIR SINE MIR -79 129 83 687 283 69 27 chr3 49529583 49530042 -168507116 - L1ME3 LINE L1 -3625 2590 2158 2351 88 16 0 chr3 49530057 49530364 -168506794 + AluSx SINE Alu 1 312 0 2200 119 0 25 chr3 49530526 49530846 -168506312 - AluSx SINE Alu 0 312 1 2334 100 6 0 chr3 49531014 49531325 -168505833 - AluSp SINE Alu 0 313 1 228 172 0 0 chr3 49531854 49531912 -168505246 + (TA)n Simple_repeat Simple_repeat 2 59 0 187 288 104 24 chr3 49531990 49532115 -168505043 - L3b LINE CR1 -199 1384 1250 400 292 50 0 chr3 49532156 49532276 -168504882 - L2 LINE L2 0 3272 3147 401 287 20 33 chr3 49532832 49532982 -168504176 - MIR SINE MIR -13 249 102 4068 38 0 0 chr3 49533637 49534108 -168503050 + L1PA3 LINE L1 5689 6159 0 225 0 0 0 chr3 49534301 49534326 -168502832 + (TG)n Simple_repeat Simple_repeat 1 25 0 207 358 73 0 chr3 49534330 49534439 -168502719 - MIR SINE MIR -26 236 120 785 218 64 44 chr3 49534623 49534921 -168502237 - L1MC4a LINE L1 -1845 5963 5660 2275 111 3 0 chr3 49535137 49535434 -168501724 + AluSx SINE Alu 1 298 -14 908 154 0 0 chr3 49536078 49536208 -168500950 - FLAM_C SINE Alu -3 130 1 326 221 35 58 chr3 49536228 49536314 -168500844 - MIR3 SINE MIR -38 170 87 2422 83 0 13 chr3 49536543 49536857 -168500301 + AluY SINE Alu 2 311 0 367 313 38 30 chr3 49537282 49537544 -168499614 + L1ME4a LINE L1 4357 4620 -1526 494 237 191 35 chr3 49538192 49538475 -168498683 + L1ME4a LINE L1 5795 6121 0 206 222 111 0 chr3 49538637 49538691 -168498467 - MIR SINE MIR -62 146 87 2079 135 157 21 chr3 49539481 49539858 -168497300 + MSTA LTR MaLR 1 428 0 216 186 23 0 chr3 49540812 49540855 -168496303 + GA-rich Low_complexity Low_complexity 3 46 0 844 217 87 130 chr3 49541383 49541738 -168495420 - MER102b DNA MER1_type -1 340 1 642 200 103 107 chr3 49545505 49545762 -168491396 - L1MC5 LINE L1 -44 7917 7660 2274 119 0 0 chr3 49545762 49546072 -168491086 - AluSx SINE Alu -2 310 1 642 200 103 107 chr3 49546072 49546124 -168491034 - L1MC5 LINE L1 -301 7660 7609 222 218 0 58 chr3 49546131 49546218 -168490940 + CT-rich Low_complexity Low_complexity 6 87 0 1092 198 104 53 chr3 49546218 49546613 -168490545 - L1MC5 LINE L1 -383 7578 7164 2145 136 0 3 chr3 49546614 49546922 -168490236 - AluSx SINE Alu -5 307 1 632 249 44 15 chr3 49547117 49547322 -168489836 - L1MC5 LINE L1 -1839 5969 5759 210 197 28 28 chr3 49547779 49547818 -168489340 + (TA)n Simple_repeat Simple_repeat 2 43 -29 2142 101 21 3 chr3 49547818 49548105 -168489053 - AluSq SINE Alu -21 292 1 210 197 28 28 chr3 49548105 49548136 -168489022 + (TA)n Simple_repeat Simple_repeat 42 72 0 282 242 71 0 chr3 49548163 49548194 -168488964 + L1ME4a LINE L1 6011 6038 -83 804 178 0 22 chr3 49548194 49548329 -168488829 - FLAM_A SINE Alu 0 133 2 282 242 71 0 chr3 49548329 49548396 -168488762 + L1ME4a LINE L1 6038 6116 -5 1523 244 73 28 chr3 49548584 49549229 -168487929 - L1MC5 LINE L1 -75 7886 7275 643 254 144 10 chr3 49549250 49549549 -168487609 + L2 LINE L2 1968 2306 -1008 1542 209 10 16 chr3 49549576 49549887 -168487271 + MER58B DNA MER1_type 33 341 0 594 288 34 22 chr3 49549887 49550154 -168487004 + L2 LINE L2 2310 2579 -735 551 161 21 0 chr3 49550160 49550253 -168486905 - MER20 DNA MER1_type 0 219 125 236 250 34 23 chr3 49550257 49550345 -168486813 - L2 LINE L2 -362 2952 2864 554 237 17 0 chr3 49550348 49550466 -168486692 - MER20 DNA MER1_type -98 121 2 912 293 84 41 chr3 49550680 49551336 -168485822 + L2 LINE L2 2628 3313 0 2224 113 3 0 chr3 49551722 49552013 -168485145 - AluSx SINE Alu -18 294 3 543 229 80 40 chr3 49552887 49553062 -168484096 - MIR SINE MIR 0 262 81 2141 126 14 0 chr3 49553291 49553585 -168483573 + AluJo SINE Alu 2 299 -13 408 260 32 16 chr3 49553666 49553789 -168483369 + LTR16A LTR ERVL 93 217 -233 827 268 42 23 chr3 49554383 49554798 -168482360 + L1ME1 LINE L1 5006 5423 -751 2458 99 0 0 chr3 49554820 49555132 -168482026 + AluSx SINE Alu 1 312 0 275 213 102 56 chr3 49555135 49555243 -168481915 + L1ME1 LINE L1 5817 5929 -241 1136 168 51 9 chr3 49555403 49555617 -168481541 + MER58 DNA MER1_type 1 223 -2197 1064 191 150 31 chr3 49555695 49555989 -168481169 + LTR40b LTR ERVL 133 461 -1 398 252 7 43 chr3 49555992 49556131 -168481027 - MIR SINE MIR -58 150 17 725 196 30 12 chr3 49556556 49556724 -168480434 + MER5B DNA MER1_type 2 172 -6 342 255 32 0 chr3 49557239 49557333 -168479825 + MIR SINE MIR 61 157 -105 858 253 127 67 chr3 49557342 49557805 -168479353 + LTR16C LTR ERVL 1 491 0 398 291 31 31 chr3 49558052 49558179 -168478979 - MER115 DNA AcHobo -269 424 298 454 305 115 11 chr3 49558220 49558394 -168478764 - MER115 DNA AcHobo -500 193 2 1969 149 0 34 chr3 49558787 49559110 -168478048 + AluSx SINE Alu 1 312 0 2245 58 0 18 chr3 49559134 49559411 -168477747 - AluY SINE Alu -4 307 36 509 212 129 8 chr3 49559872 49560004 -168477154 + MER58C DNA MER1_type 67 214 -1 867 160 0 0 chr3 49560410 49560535 -168476623 - FLAM_C SINE Alu -18 125 1 822 116 39 16 chr3 49560619 49560748 -168476410 - FLAM_C SINE Alu 0 133 2 2197 132 3 0 chr3 49561503 49561814 -168475344 - AluSx SINE Alu 0 312 1 1967 162 3 3 chr3 49561946 49562254 -168474904 + AluSx SINE Alu 1 308 -4 627 235 82 15 chr3 49562267 49562463 -168474695 + L1ME1 LINE L1 5901 6109 -57 249 170 0 0 chr3 49562616 49562669 -168474489 + L1ME2 LINE L1 6112 6164 0 1560 175 39 4 chr3 49562714 49562994 -168474164 + AluJo SINE Alu 1 290 -22 907 154 56 6 chr3 49563120 49563282 -168473876 - MER3 DNA MER1_type -82 127 5 731 284 34 0 chr3 49563591 49563795 -168473363 + L1MC/D LINE L1 5524 5734 -2074 444 19 0 0 chr3 49564583 49564636 -168472522 + (TG)n Simple_repeat Simple_repeat 1 53 0 23 68 0 0 chr3 49566054 49566098 -168471060 + GC_rich Low_complexity Low_complexity 1 44 0 432 37 0 0 chr3 49567193 49567247 -168469911 + (TG)n Simple_repeat Simple_repeat 1 54 0 237 33 0 0 chr3 49567848 49567878 -168469280 + (CA)n Simple_repeat Simple_repeat 2 31 0 268 315 133 13 chr3 49567930 49568314 -168468844 + L1M4 LINE L1 4733 5162 -984 272 286 45 15 chr3 49568439 49568572 -168468586 + L1P5 LINE L1 5296 5432 -719 1929 131 10 30 chr3 49568645 49568942 -168468216 + AluSx SINE Alu 1 291 -21 704 337 89 40 chr3 49569030 49569507 -168467651 + L2 LINE L2 2069 2606 -708 1098 208 33 0 chr3 49569507 49569719 -168467439 - MER20 DNA MER1_type 0 219 1 704 337 89 40 chr3 49569719 49570075 -168467083 + L2 LINE L2 2606 2943 -371 378 291 37 45 chr3 49570778 49570912 -168466246 + L2 LINE L2 3136 3268 -4 422 272 8 24 chr3 49571113 49571238 -168465920 + MIR3 SINE MIR 32 154 -54 189 196 0 0 chr3 49571434 49571480 -168465678 + (TG)n Simple_repeat Simple_repeat 2 47 0 1774 219 60 54 chr3 49571718 49572026 -168465132 - MLT2B1 LTR ERVL 0 520 206 1693 167 7 36 chr3 49572026 49572332 -168464826 - AluJo SINE Alu -15 297 1 1774 219 60 54 chr3 49572332 49572540 -168464618 - MLT2B1 LTR ERVL -314 206 1 298 279 23 0 chr3 49573031 49573117 -168464041 - L2 LINE L2 -4 3268 3181 6294 147 5 46 chr3 49573252 49574264 -168462894 - L1MA6 LINE L1 -1 6299 5411 2426 81 3 0 chr3 49574264 49574571 -168462587 + AluY SINE Alu 1 308 -3 6294 147 5 46 chr3 49574571 49575570 -168461588 - L1MA6 LINE L1 -889 5411 4372 911 121 7 0 chr3 49575590 49575608 -168461550 + (TC)n Simple_repeat Simple_repeat 1 168 0 911 121 7 0 chr3 49575608 49575757 -168461401 + (TC)n Simple_repeat Simple_repeat 2 151 0 1886 131 18 4 chr3 49575791 49576056 -168461102 - AluSx SINE Alu -32 280 9 231 36 0 0 chr3 49576056 49576084 -168461074 + (TTCC)n Simple_repeat Simple_repeat 3 30 0 226 275 181 12 chr3 49576283 49576443 -168460715 + MIR SINE MIR 19 205 -57 4853 133 25 104 chr3 49576449 49576653 -168460505 + MER4D LTR ERV1 1 220 -683 2339 78 10 0 chr3 49576653 49576947 -168460211 - AluSg SINE Alu -13 297 1 4853 133 25 104 chr3 49576947 49577346 -168459812 + MER4D LTR ERV1 220 499 -404 2707 43 0 0 chr3 49577346 49577650 -168459508 - AluY SINE Alu -7 304 1 4853 133 25 104 chr3 49577650 49578026 -168459132 + MER4D LTR ERV1 499 903 0 211 246 66 25 chr3 49578229 49578351 -168458807 + L2 LINE L2 2289 2415 -899 313 189 0 29 chr3 49578355 49578426 -168458732 + Alu SINE Alu 235 281 -21 869 118 0 0 chr3 49579046 49579173 -168457985 - AluSg/x SINE Alu 0 312 186 1038 172 59 25 chr3 49579186 49579390 -168457768 + L1 LINE L1 3780 3990 -2156 2229 120 0 3 chr3 49579406 49579706 -168457452 + AluSx SINE Alu 1 299 -13 1954 151 3 10 chr3 49579718 49580030 -168457128 + AluSx SINE Alu 1 310 -2 2692 122 33 31 chr3 49580080 49580505 -168456653 + MSTC LTR MaLR 3 428 0 508 220 137 42 chr3 49580528 49580696 -168456462 - MLT1J LTR MaLR -327 184 1 1778 165 29 4 chr3 49581089 49581368 -168455790 + AluJo SINE Alu 1 286 -26 186 133 0 0 chr3 49581368 49581398 -168455760 + (TA)n Simple_repeat Simple_repeat 1 30 0 247 311 0 0 chr3 49581607 49581668 -168455490 + polypyrimidine Low_complexity Low_complexity 2 62 0 239 341 109 7 chr3 49582055 49582193 -168454965 - Charlie8 DNA MER1_type -2159 258 107 206 234 0 0 chr3 49582309 49582356 -168454802 + MIR SINE MIR 210 256 -6 551 256 62 43 chr3 49582775 49582986 -168454172 + MIR SINE MIR 20 234 -28 180 0 0 0 chr3 49583380 49583400 -168453758 + (CA)n Simple_repeat Simple_repeat 2 21 0 1063 202 18 14 chr3 49583536 49583759 -168453399 + L1MEc LINE L1 35 258 -6138 945 204 17 0 chr3 49583760 49583936 -168453222 - MSTD LTR MaLR 0 396 218 2534 217 8 8 chr3 49583948 49584483 -168452675 - MSTD-int LTR MaLR -1199 536 2 1909 176 34 77 chr3 49584485 49584899 -168452259 - MSTD LTR MaLR 0 396 1 445 303 74 26 chr3 49584899 49585170 -168451988 + L1MEc LINE L1 255 538 -5858 1211 252 78 25 chr3 49585198 49585465 -168451693 - MLT2F LTR ERVL -32 620 369 1848 160 3 6 chr3 49585465 49585778 -168451380 - AluJb SINE Alu 0 312 1 1211 252 78 25 chr3 49585778 49586048 -168451110 - MLT2F LTR ERVL -283 369 1 1893 241 77 47 chr3 49586049 49586475 -168450683 + L1MEc LINE L1 1170 1581 -4815 557 188 14 51 chr3 49586475 49586613 -168450545 + FLAM_C SINE Alu 1 133 0 1893 241 77 47 chr3 49586613 49587001 -168450157 + L1MEc LINE L1 1581 2009 -4387 295 258 75 0 chr3 49588076 49588196 -168448962 - MIR SINE MIR -32 230 102 1484 225 49 42 chr3 49588803 49589256 -168447902 + LTR40c LTR ERVL 5 460 -5 2904 10 0 0 chr3 49590228 49590536 -168446622 - AluYa5 SINE Alu -3 308 1 1369 245 22 7 chr3 49590810 49591192 -168445966 - LTR16B LTR ERVL -2 462 2 475 161 43 0 chr3 49591728 49591821 -168445337 - MER33 DNA MER1_type -1 323 227 575 216 8 4 chr3 49591829 49591955 -168445203 - MER33 DNA MER1_type -262 62 1 207 100 0 0 chr3 49592058 49592088 -168445070 + (T)n Simple_repeat Simple_repeat 1 30 0 231 276 150 8 chr3 49592575 49592702 -168444456 + MIR SINE MIR 117 261 -1 1550 165 115 72 chr3 49592731 49593217 -168443941 + Charlie4a DNA MER1_type 1 507 -1 690 184 109 23 chr3 49593536 49593710 -168443448 + MER5A DNA MER1_type 1 189 0 200 119 0 24 chr3 49594317 49594359 -168442799 + (TCC)n Simple_repeat Simple_repeat 1 41 0 1673 152 40 11 chr3 49597603 49597880 -168439278 + AluSx SINE Alu 3 287 -25 2523 72 7 0 chr3 49599821 49600126 -168437032 + AluSp SINE Alu 1 307 -6 2250 85 7 0 chr3 49600677 49600986 -168436172 - AluSp SINE Alu 0 312 2 23 0 0 0 chr3 49600987 49601010 -168436148 + AT_rich Low_complexity Low_complexity 1 23 0 929 154 43 0 chr3 49601013 49601175 -168435983 - L1MA5 LINE L1 0 6300 6132 1881 122 64 17 chr3 49601267 49601563 -168435595 + AluSx SINE Alu 3 312 0 197 313 38 0 chr3 49602705 49602785 -168434373 - MIR SINE MIR 0 262 180 354 296 40 68 chr3 49602801 49602977 -168434181 + L2 LINE L2 1013 1183 -2131 666 278 111 41 chr3 49603004 49603392 -168433766 + L2 LINE L2 1325 1739 -1575 983 299 92 43 chr3 49603412 49604198 -168432960 + L2 LINE L2 2365 3238 -75 1542 242 27 83 chr3 49604198 49604718 -168432440 + LTR16C LTR ERVL 1 491 0 983 299 92 43 chr3 49604718 49604798 -168432360 + L2 LINE L2 3238 3313 0 339 280 75 23 chr3 49605224 49605408 -168431750 + L1P LINE L1 4881 5076 -1070 1680 177 10 3 chr3 49605436 49605724 -168431434 + AluJo SINE Alu 1 290 -22 273 106 21 0 chr3 49605727 49605774 -168431384 - L1MB3 LINE L1 -10 6173 6126 324 70 0 0 chr3 49606101 49606144 -168431014 + (TG)n Simple_repeat Simple_repeat 2 44 0 256 208 13 13 chr3 49606144 49606221 -168430937 + (TA)n Simple_repeat Simple_repeat 2 78 0 207 118 71 0 chr3 49606311 49606396 -168430762 + (TA)n Simple_repeat Simple_repeat 1 91 0 1313 162 0 0 chr3 49606895 49607086 -168430072 + AluSx SINE Alu 1 191 -121 1053 150 6 11 chr3 49607652 49607832 -168429326 - L1MB8 LINE L1 0 6178 6000 1785 192 33 6 chr3 49607835 49608199 -168428959 - L1M4 LINE L1 -1096 5050 4677 6224 125 19 17 chr3 49608638 49609783 -168427375 + L1PA16 LINE L1 5015 6166 0 1267 182 20 29 chr3 49609819 49610164 -168426994 - MER58B DNA MER1_type -10 331 4 230 264 21 156 chr3 49610637 49610925 -168426233 + MIR SINE MIR 14 262 0 679 260 119 17 chr3 49611068 49611429 -168425729 - L1M4 LINE L1 -2829 3317 2920 186 43 0 0 chr3 49611429 49611452 -168425706 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2384 43 0 4 chr3 49611454 49611735 -168425423 - AluY SINE Alu -31 280 1 180 0 0 0 chr3 49612657 49612677 -168424481 + (CA)n Simple_repeat Simple_repeat 2 21 0 464 255 178 19 chr3 49612756 49612913 -168424245 - MER5A DNA MER1_type -1 188 7 5026 60 46 32 chr3 49612983 49613639 -168423519 - PABL_B LTR ERV1 0 667 3 404 322 33 33 chr3 49613644 49613858 -168423300 + MIR SINE MIR 28 241 -21 227 301 68 45 chr3 49613972 49614105 -168423053 - MER5A DNA MER1_type -6 183 48 215 273 93 73 chr3 49613989 49614139 -168423019 + MER5A DNA MER1_type 36 188 -1 * 404 264 113 11 chr3 49614567 49614735 -168422423 + L1ME LINE L1 5589 5776 -345 507 344 124 26 chr3 49614742 49615321 -168421837 - L2 LINE L2 -341 2973 2338 836 134 8 16 chr3 49615322 49615449 -168421709 - FLAM_C SINE Alu -12 131 6 640 269 108 0 chr3 49615454 49615640 -168421518 - L2 LINE L2 -965 2349 2144 22 0 0 0 chr3 49616080 49616102 -168421056 + AT_rich Low_complexity Low_complexity 1 22 0 274 163 117 179 chr3 49616108 49616304 -168420854 + L1ME LINE L1 5488 5671 -450 390 306 12 24 chr3 49616780 49616950 -168420208 + MER69A DNA AcHobo 1 168 -9 21 0 0 0 chr3 49618080 49618101 -168419057 + GC_rich Low_complexity Low_complexity 1 21 0 515 15 0 15 chr3 49618395 49618460 -168418698 + (TA)n Simple_repeat Simple_repeat 2 65 0 1216 235 64 0 chr3 49618460 49618758 -168418400 - Charlie4a DNA MER1_type -188 320 4 311 235 105 62 chr3 49618898 49619156 -168418002 - L1ME2 LINE L1 -198 5966 5698 24 53 0 0 chr3 49619157 49619195 -168417963 + AT_rich Low_complexity Low_complexity 1 38 0 496 298 31 37 chr3 49619621 49619924 -168417234 - L1MEc LINE L1 -2953 3262 2960 2099 128 3 10 chr3 49619924 49620230 -168416928 - AluSq SINE Alu -9 304 1 496 298 31 37 chr3 49620230 49620279 -168416879 - L1MEc LINE L1 -3255 2960 2912 437 204 54 63 chr3 49620426 49620573 -168416585 - L1MC4 LINE L1 -20 6146 6041 997 179 23 69 chr3 49620604 49620822 -168416336 - AluJb SINE Alu -20 292 85 1041 177 37 31 chr3 49620823 49621110 -168416048 - L1ME1 LINE L1 -115 6051 5725 314 314 27 18 chr3 49621218 49621466 -168415692 - L1MEc LINE L1 -3572 2643 2394 326 179 211 11 chr3 49621473 49621568 -168415590 + LTR33 LTR ERVL 35 148 -373 * 565 250 0 8 chr3 49621566 49621690 -168415468 + MLT2F LTR ERVL 22 144 -519 280 143 79 32 chr3 49621693 49621756 -168415402 + MLT1E3 LTR MaLR 50 115 -509 263 278 123 21 chr3 49621811 49621952 -168415206 + MLT2F LTR ERVL 458 624 -39 324 0 0 0 chr3 49621952 49621988 -168415170 + (TC)n Simple_repeat Simple_repeat 1 36 0 263 278 123 21 chr3 49621988 49622033 -168415125 + MLT2F LTR ERVL 624 663 0 426 306 92 17 chr3 49622034 49622380 -168414778 - L1MEc LINE L1 -875 1701 1275 14136 212 26 28 chr3 49622383 49624169 -168412989 - L1P4 LINE L1 -481 5685 3898 1853 120 73 54 chr3 49624169 49624537 -168412621 + THE1C LTR MaLR 1 375 0 14136 212 26 28 chr3 49624537 49626585 -168410573 - L1P4 LINE L1 -2268 3898 1858 246 224 0 0 chr3 49626586 49626635 -168410523 - L1ME3A LINE L1 -226 5944 5896 883 204 10 53 chr3 49627304 49627510 -168409648 + MIR SINE MIR 55 251 -11 757 259 26 80 chr3 49627700 49628051 -168409107 + MLT1I LTR MaLR 71 402 -7 328 284 37 0 chr3 49628148 49628229 -168408929 + L2 LINE L2 3192 3275 -38 2287 62 0 4 chr3 49628267 49628541 -168408617 + AluY SINE Alu 26 298 -13 330 235 151 103 chr3 49629101 49629412 -168407746 + HAL1 LINE L1 1234 1559 -948 568 254 47 6 chr3 49629464 49629633 -168407525 - MIR SINE MIR -1 261 86 328 47 0 0 chr3 49629987 49630030 -168407128 + L1PA6 LINE L1 6109 6151 -3 680 275 105 3 chr3 49630553 49630848 -168406310 + HAL1 LINE L1 2169 2493 -14 23 33 0 0 chr3 49631263 49631293 -168405865 + AT_rich Low_complexity Low_complexity 1 30 0 213 331 8 24 chr3 49632921 49633048 -168404110 + GA-rich Low_complexity Low_complexity 3 127 0 2110 115 13 7 chr3 49633102 49633406 -168403752 - AluSx SINE Alu -6 306 1 363 167 71 0 chr3 49633634 49633718 -168403440 - Charlie2a DNA MER1_type -45 2817 2728 890 206 10 5 chr3 49633735 49633929 -168403229 - Charlie2a DNA MER1_type -1199 1663 1469 499 294 175 15 chr3 49633993 49634262 -168402896 - Charlie2a DNA MER1_type -2549 313 2 202 330 160 0 chr3 49634356 49634462 -168402696 + L2 LINE L2 311 433 -2881 340 342 17 0 chr3 49634520 49634637 -168402521 + L1MC4a LINE L1 5531 5649 -2159 1162 220 96 86 chr3 49634725 49635153 -168402005 - MER77 LTR ERV1 -20 585 154 492 257 172 32 chr3 49635332 49635670 -168401488 + L1MC4a LINE L1 5654 6038 -1770 854 284 54 38 chr3 49635827 49636271 -168400887 - L1M4 LINE L1 -2116 4030 3580 180 0 0 0 chr3 49636551 49636571 -168400587 + (TG)n Simple_repeat Simple_repeat 2 21 0 29 28 0 0 chr3 49636599 49636635 -168400523 + AT_rich Low_complexity Low_complexity 1 36 0 811 285 170 2 chr3 49636651 49637062 -168400096 - LTR33 LTR ERVL -20 501 22 1777 129 6 79 chr3 49637177 49637495 -168399663 + AluJb SINE Alu 1 295 -17 737 259 46 50 chr3 49637806 49638001 -168399157 + L1ME3A LINE L1 5907 6102 -68 1442 228 35 38 chr3 49638001 49638370 -168398788 - MLT1A2 LTR MaLR -4 370 3 737 259 46 50 chr3 49638370 49638433 -168398725 + L1ME3A LINE L1 6102 6164 -6 776 272 13 85 chr3 49639150 49639455 -168397703 - L2 LINE L2 -6 3307 3025 2141 252 87 5 chr3 49639512 49640107 -168397051 - L2 LINE L2 -498 2816 2173 1291 161 103 42 chr3 49640113 49640322 -168396836 + MER2 DNA MER2_type 16 252 -93 2374 105 0 9 chr3 49640322 49640637 -168396521 - AluSx SINE Alu 0 312 1 1291 161 103 42 chr3 49640637 49640738 -168396420 + MER2 DNA MER2_type 252 345 0 327 278 52 23 chr3 49640738 49640911 -168396247 - L2 LINE L2 -1151 2163 1986 1966 160 0 3 chr3 49640943 49641250 -168395908 - AluJb SINE Alu -6 306 1 3839 124 2 2 chr3 49641325 49641879 -168395279 - MER41B LTR ERV1 -81 554 1 25593 100 32 40 chr3 49641879 49643315 -168393843 - MER41B-int LTR ERV1 0 5946 4501 1885 160 3 0 chr3 49643315 49643602 -168393556 - AluSx SINE Alu -24 288 1 25593 100 32 40 chr3 49643602 49646192 -168390966 - MER41B-int LTR ERV1 -1445 4501 500 7837 28 14 0 chr3 49646223 49647528 -168389630 - L1PA5 LINE L1 -9 6145 4832 6478 33 0 0 chr3 49647528 49648286 -168388872 + L1PA5 LINE L1 4079 4836 -1310 575 157 0 0 chr3 49648294 49648383 -168388775 - HUERS-P1 LTR ERV1 -4225 2038 1950 * 4162 133 46 9 chr3 49648367 49648775 -168388383 - HUERS-P1 LTR ERV1 -4171 1775 1331 207 0 0 0 chr3 49648775 49648798 -168388360 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4162 133 46 9 chr3 49648798 49649060 -168388098 - HUERS-P1 LTR ERV1 -4615 1331 1080 * 4408 111 11 26 chr3 49649049 49649503 -168387655 - HUERS-P1 LTR ERV1 -5308 638 195 1812 154 18 3 chr3 49649503 49649789 -168387369 + AluSx SINE Alu 3 292 -20 4408 111 11 26 chr3 49649789 49649982 -168387176 - HUERS-P1 LTR ERV1 -5751 195 1 1046 77 0 94 chr3 49649983 49650110 -168387048 - MER41A LTR ERV1 -1 553 444 2385 62 0 16 chr3 49650110 49650419 -168386739 + AluY SINE Alu 7 310 -1 1046 77 0 94 chr3 49650419 49650461 -168386697 - MER41A LTR ERV1 -110 444 400 395 298 41 53 chr3 49650461 49650632 -168386526 - L1M4 LINE L1 -3569 2577 2409 1155 239 118 17 chr3 49650812 49650941 -168386217 - MER110A LTR ERV1 0 468 353 1920 144 0 0 chr3 49650941 49651240 -168385918 + AluSx SINE Alu 1 299 -13 1155 239 118 17 chr3 49651240 49651516 -168385642 - MER110A LTR ERV1 -115 353 22 35 0 0 0 chr3 49652091 49652126 -168385032 + AT_rich Low_complexity Low_complexity 1 35 0 2025 103 0 36 chr3 49652167 49652468 -168384690 - AluSx SINE Alu -10 302 13 1446 212 65 34 chr3 49652663 49653106 -168384052 + LTR16A1 LTR ERVL 1 457 0 457 262 0 47 chr3 49653185 49653292 -168383866 + L2 LINE L2 3188 3289 -24 1082 148 50 16 chr3 49653296 49653478 -168383680 - MLT1A1 LTR MaLR 0 365 178 213 344 32 64 chr3 49753518 49753829 -168283329 - L3 LINE CR1 -652 925 625 1352 334 56 20 chr3 49755070 49756109 -168281049 - L2 LINE L2 -195 3077 1943 216 239 43 0 chr3 49756430 49756476 -168280682 + MER5A DNA MER1_type 3 50 -139 1003 162 52 48 chr3 49756477 49756706 -168280452 + MLT1E1 LTR MaLR 1 230 -424 467 237 197 0 chr3 49756861 49757013 -168280145 + MLT1E1 LTR MaLR 473 654 0 669 180 65 36 chr3 49757013 49757152 -168280006 + MER5A DNA MER1_type 47 189 0 184 246 198 16 chr3 49757236 49757362 -168279796 - MIR SINE MIR -1 261 113 2153 38 0 11 chr3 49757832 49758096 -168279062 + L1PA8 LINE L1 5912 6172 0 397 319 93 48 chr3 49758672 49759048 -168278110 + L1MEd LINE L1 1 393 -5726 671 216 52 0 chr3 49759070 49759223 -168277935 + MER3 DNA MER1_type 49 209 0 6233 157 20 5 chr3 49759744 49761054 -168276104 + L1MC1 LINE L1 5004 6332 -1 405 180 135 0 chr3 49761217 49761306 -168275852 + L1MC1 LINE L1 6231 6331 -2 * 4703 162 26 53 chr3 49761302 49762575 -168274583 + L1MD2 LINE L1 4981 6224 -18 253 349 66 0 chr3 49762610 49762716 -168274442 - L1MC4a LINE L1 -1220 6588 6476 6998 174 20 6 chr3 49763177 49765494 -168271664 + L1PA16 LINE L1 3820 6158 -8 608 279 62 4 chr3 49765634 49765860 -168271298 - L1MC4a LINE L1 -1987 5821 5583 287 275 7 4 chr3 49766483 49766569 -168270589 + MIR SINE MIR 61 146 -62 661 244 140 6 chr3 49767410 49767574 -168269584 + MER5A DNA MER1_type 4 189 0 324 301 22 15 chr3 49767690 49767826 -168269332 - L1ME4a LINE L1 -35 6086 5950 180 301 82 0 chr3 49767864 49767937 -168269221 - L2 LINE L2 -62 3251 3173 647 211 180 0 chr3 49768128 49768289 -168268869 - MIR SINE MIR -5 257 68 295 240 0 13 chr3 49768657 49768732 -168268426 + L2 LINE L2 2994 3067 -205 343 350 0 8 chr3 49768759 49768879 -168268279 + MIR SINE MIR 64 182 -80 209 344 108 11 chr3 49768968 49769061 -168268097 + L2 LINE L2 3122 3223 -49 297 0 0 0 chr3 49769537 49769570 -168267588 + (TG)n Simple_repeat Simple_repeat 2 34 0 222 329 41 0 chr3 49770651 49770724 -168266434 - L2 LINE L2 -23 3249 3174 210 217 87 0 chr3 49770976 49771022 -168266136 - L2 LINE L2 0 3272 3223 378 295 93 7 chr3 49771633 49771772 -168265386 + MIR SINE MIR 47 197 -65 25 0 0 0 chr3 49771874 49771899 -168265259 + AT_rich Low_complexity Low_complexity 1 25 0 763 345 162 11 chr3 49771947 49772682 -168264476 - L1M4 LINE L1 -1329 4817 3931 1992 75 8 0 chr3 49772682 49772934 -168264224 - AluY SINE Alu -16 295 42 763 345 162 11 chr3 49772934 49773064 -168264094 - L1M4 LINE L1 -2215 3931 3822 249 351 94 48 chr3 49773721 49774134 -168263024 + L2 LINE L2 2286 2717 -597 383 283 45 21 chr3 49774173 49774445 -168262713 + MER46C DNA MER2_type 2 332 -6 563 269 91 29 chr3 49774460 49774648 -168262510 - HAL1 LINE L1 -92 2415 2240 2333 126 23 18 chr3 49774648 49775036 -168262122 - MLT1B LTR MaLR 0 390 1 563 269 91 29 chr3 49775036 49775263 -168261895 - HAL1 LINE L1 -267 2240 1974 992 272 148 2 chr3 49775397 49775966 -168261192 - HAL1 LINE L1 -725 1782 1131 535 312 69 87 chr3 49776000 49776538 -168260620 - HAL1 LINE L1 -1575 932 405 283 277 117 7 chr3 49777085 49777222 -168259936 + L2 LINE L2 3160 3311 -2 666 278 37 27 chr3 49777246 49777537 -168259621 - LTR16A1 LTR ERVL -2 455 162 446 223 10 10 chr3 49777537 49777640 -168259518 - MER81 DNA DNA -2 112 10 2410 148 80 23 chr3 49777738 49777808 -168259350 + MLT1D LTR MaLR 1 66 -439 1613 161 0 4 chr3 49777808 49778056 -168259102 + AluJb SINE Alu 58 304 -8 2410 148 80 23 chr3 49778056 49778425 -168258733 + MLT1D LTR MaLR 66 472 -33 2320 108 0 0 chr3 49778425 49778731 -168258427 + AluSx SINE Alu 1 306 -6 2410 148 80 23 chr3 49778731 49778768 -168258390 + MLT1D LTR MaLR 472 505 0 609 246 118 23 chr3 49778988 49779208 -168257950 + MIR SINE MIR 5 245 -17 423 267 107 20 chr3 49781331 49781481 -168255677 + MIR SINE MIR 51 213 -49 24 53 0 0 chr3 49781907 49781945 -168255213 + AT_rich Low_complexity Low_complexity 1 38 0 1263 167 47 18 chr3 49781957 49782299 -168254859 - MER3 DNA MER1_type 0 2585 2234 388 136 11 57 chr3 49782301 49782389 -168254769 - MER3 DNA MER1_type -46 163 87 643 243 243 3 chr3 49782396 49782762 -168254396 - Charlie7 DNA MER1_type -2115 497 44 2003 147 0 13 chr3 49782976 49783283 -168253875 - AluJo SINE Alu -9 303 1 240 169 0 42 chr3 49784985 49785056 -168252102 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 440 213 71 24 chr3 49785217 49785344 -168251814 + LTR50 LTR ERVL 26 158 -637 295 242 128 11 chr3 49785604 49785810 -168251348 + LTR33A LTR ERVL 330 523 0 211 321 85 9 chr3 49786423 49786468 -168250690 - MIR SINE MIR -63 199 159 1847 179 11 9 chr3 49786468 49786815 -168250343 - MER7A DNA MER2_type 0 346 1 211 321 85 9 chr3 49786815 49786875 -168250283 - MIR SINE MIR -103 159 86 486 252 0 10 chr3 49788959 49789062 -168248096 - MER81 DNA DNA 0 114 13 2020 190 57 2 chr3 49789062 49789468 -168247690 + MSTC LTR MaLR 1 428 0 4813 217 59 45 chr3 49789470 49790760 -168246398 + MSTC-int LTR MaLR 2 1309 -426 6218 197 19 32 chr3 49791370 49794154 -168243004 - L1MC1 LINE L1 -6 6607 3867 2497 87 37 8 chr3 49794154 49794532 -168242626 + MLT2A1 LTR ERVL 1 389 -55 2554 84 3 11 chr3 49794532 49794891 -168242267 + L1PB1 LINE L1 5795 6150 -1 9764 172 90 26 chr3 49795002 49795424 -168241734 - L1MC1 LINE L1 -3147 3279 2886 2233 120 0 0 chr3 49795424 49795724 -168241434 - AluSc SINE Alu -9 300 1 9764 172 90 26 chr3 49795724 49797470 -168239688 - L1MC1 LINE L1 -3540 2886 851 962 132 76 30 chr3 49797470 49797667 -168239491 + L1PA16 LINE L1 5957 6162 -4 9764 172 90 26 chr3 49797667 49798558 -168238600 - L1MC1 LINE L1 -5575 851 19 1940 61 0 20 chr3 49800492 49800738 -168236420 - AluY SINE Alu 0 311 71 943 158 9 25 chr3 49800748 49801062 -168236096 - L1MA4A LINE L1 -23 6280 5911 440 202 0 0 chr3 49801064 49801148 -168236010 - L1ME3A LINE L1 -54 6116 6033 550 266 52 31 chr3 49801228 49801457 -168235701 - MIR SINE MIR -21 241 8 1992 145 17 0 chr3 49801515 49801811 -168235347 + AluJb SINE Alu 9 309 -3 247 198 45 99 chr3 49802430 49802541 -168234617 + MIR SINE MIR 20 124 -84 376 244 0 0 chr3 49802998 49803084 -168234074 - MER3 DNA MER1_type 0 209 124 505 293 106 44 chr3 49803093 49803567 -168233591 + L2 LINE L2 2804 3306 -7 278 225 171 0 chr3 49803574 49803685 -168233473 + MER113 DNA MER1_type? 6 135 -386 323 332 10 42 chr3 49804778 49804971 -168232187 + L2 LINE L2 2895 3081 -191 470 292 26 0 chr3 49805191 49805304 -168231854 + L2 LINE L2 3155 3270 -2 790 316 67 21 chr3 49805848 49806712 -168230446 + L1M4 LINE L1 2918 3821 -2325 252 304 11 11 chr3 49807590 49807682 -168229476 + GA-rich Low_complexity Low_complexity 1 92 0 218 310 30 20 chr3 49808193 49808293 -168228865 - L3 LINE CR1 -46 1531 1431 285 260 36 50 chr3 49808373 49808527 -168228631 - L1M2 LINE L1 -823 5468 5317 4195 149 24 9 chr3 49809045 49809745 -168227413 + MER50 LTR ERV1 1 711 -23 243 321 45 18 chr3 49809786 49809898 -168227260 - L3 LINE CR1 -171 1406 1292 1258 225 192 21 chr3 49811016 49811443 -168225715 + LTR33 LTR ERVL 1 500 -21 210 370 14 68 chr3 49812088 49812192 -168224966 + L2 LINE L2 2593 2688 -626 2183 86 0 4 chr3 49812192 49812471 -168224687 - AluSg SINE Alu -5 305 28 210 370 14 68 chr3 49812471 49812512 -168224646 + L2 LINE L2 2688 2730 -584 39 38 0 0 chr3 49812849 49812902 -168224256 + AT_rich Low_complexity Low_complexity 1 53 0 495 209 32 44 chr3 49812902 49813060 -168224098 - Charlie5 DNA MER1_type -2446 166 11 1545 247 114 13 chr3 49814076 49814549 -168222609 - L1ME3 LINE L1 -85 6077 5557 1453 249 66 68 chr3 49814913 49815503 -168221655 + L1MC4a LINE L1 5407 5995 -1813 1051 265 112 31 chr3 49816248 49816640 -168220518 - LTR16A1 LTR ERVL -22 435 12 4994 130 7 7 chr3 49816803 49817567 -168219591 - L1PB3 LINE L1 -1 6153 5390 * 17058 186 56 10 chr3 49817561 49822180 -168214978 - L1PBa LINE L1 -2022 4840 1 4431 190 32 34 chr3 49822187 49822913 -168214245 - L1 LINE L1 -2841 3305 2579 1479 53 37 11 chr3 49822913 49823103 -168214055 + L1PA5 LINE L1 5957 6151 -3 4431 190 32 34 chr3 49823103 49823365 -168213793 - L1 LINE L1 -3567 2579 2317 2630 143 41 17 chr3 49823365 49823783 -168213375 - MSTA LTR MaLR 0 428 1 4431 190 32 34 chr3 49823783 49823871 -168213287 - L1 LINE L1 -3829 2317 2230 767 137 341 0 chr3 49823877 49824059 -168213099 + L1PBa LINE L1 2671 2914 -3949 832 242 102 22 chr3 49824059 49824472 -168212686 - L1MC5 LINE L1 -178 7783 7338 347 286 71 0 chr3 49824473 49824599 -168212559 - L1MC4a LINE L1 -1119 6689 6555 21 0 0 0 chr3 49824619 49824640 -168212518 + AT_rich Low_complexity Low_complexity 1 21 0 853 273 138 15 chr3 49824934 49825340 -168211818 + Charlie2a DNA MER1_type 28 483 -2299 1879 223 32 32 chr3 49825371 49825896 -168211262 + Charlie2a DNA MER1_type 568 1092 -1770 1890 217 65 25 chr3 49825900 49826504 -168210654 + Charlie2a DNA MER1_type 2233 2860 -2 22 0 0 0 chr3 49826647 49826669 -168210489 + AT_rich Low_complexity Low_complexity 1 22 0 1406 228 34 51 chr3 49826679 49827175 -168209983 - MLT1H LTR MaLR -3 546 1 193 341 11 11 chr3 49827179 49827270 -168209888 - MIR SINE MIR -1 261 171 1519 210 4 0 chr3 49828239 49828511 -168208647 - LTR16C LTR ERVL -13 478 206 529 237 124 102 chr3 49829325 49829768 -168207390 - MLT1J LTR MaLR -41 470 18 725 240 62 44 chr3 49830419 49830644 -168206514 + MIR SINE MIR 34 262 0 499 222 104 78 chr3 49832320 49832550 -168204608 - MER106A DNA MER1_type 0 236 1 2260 125 0 0 chr3 49832599 49832911 -168204247 - AluSx SINE Alu 0 312 1 524 264 31 16 chr3 49833089 49833218 -168203940 + MIR SINE MIR 18 148 -114 385 253 12 0 chr3 49833672 49833755 -168203403 + L2 LINE L2 3230 3313 0 974 267 38 35 chr3 49834861 49835249 -168201909 + LTR16A1 LTR ERVL 72 457 0 995 305 68 12 chr3 49835572 49835982 -168201176 + LTR16C LTR ERVL 58 490 -1 268 239 141 0 chr3 49837016 49837087 -168200071 - MER96 DNA MER1_type? 0 175 95 * 394 190 347 8 chr3 49837024 49837145 -168200013 + MER96 DNA MER1_type? 14 175 0 306 87 0 0 chr3 49837163 49837209 -168199949 + (GA)n Simple_repeat Simple_repeat 1 46 0 546 283 53 0 chr3 49837253 49837405 -168199753 - MIR SINE MIR -8 254 95 191 154 103 0 chr3 49837811 49837850 -168199308 - MIR SINE MIR -110 152 110 471 288 92 64 chr3 49840233 49840260 -168196898 + L1MEd LINE L1 878 903 -1587 2446 75 3 0 chr3 49840260 49840567 -168196591 + AluY SINE Alu 1 308 -3 471 288 92 64 chr3 49840567 49841248 -168195910 + L1MEd LINE L1 903 1696 -794 1650 194 31 31 chr3 49841603 49841965 -168195193 + MLT1A1 LTR MaLR 1 365 0 599 260 55 28 chr3 49842422 49842603 -168194555 + MIR SINE MIR 71 256 -6 233 267 0 0 chr3 49842759 49842819 -168194339 + L1MC4 LINE L1 6644 6703 -1339 232 223 161 18 chr3 49843622 49843734 -168193424 + L2 LINE L2 2271 2398 -916 300 243 29 0 chr3 49843862 49843932 -168193226 + L2 LINE L2 3239 3310 -3 602 249 157 36 chr3 49844046 49844327 -168192831 + LTR16A1 LTR ERVL 55 369 -88 247 211 140 0 chr3 49844426 49844483 -168192675 - MIR3 SINE MIR -29 179 115 2796 104 0 46 chr3 49844990 49845156 -168192002 + THE1C LTR MaLR 1 173 -202 2391 75 7 0 chr3 49845156 49845449 -168191709 - AluY SINE Alu -14 297 3 2796 104 0 46 chr3 49845449 49845675 -168191483 + THE1C LTR MaLR 173 375 0 1862 205 57 31 chr3 49845739 49846192 -168190966 + MLT1C LTR MaLR 1 465 -2 295 291 89 20 chr3 49846413 49846549 -168190609 + MIR SINE MIR 12 153 -55 3363 203 56 13 chr3 49846991 49847758 -168189400 + L1MEd LINE L1 2146 2945 -3184 * 6085 32 0 0 chr3 49847754 49848469 -168188689 - L1PA3 LINE L1 -971 5175 4461 8262 19 1 0 chr3 49848469 49849458 -168187700 + L1PA3 LINE L1 5164 6153 -2 7868 158 38 54 chr3 49849460 49853105 -168184053 + L1MA2 LINE L1 2947 6304 0 26 30 0 0 chr3 49853105 49853138 -168184020 + AT_rich Low_complexity Low_complexity 1 33 0 1322 248 50 72 chr3 49853307 49853823 -168183335 + MLT1J LTR MaLR 5 509 -2 378 250 50 0 chr3 49854028 49854148 -168183010 + L1MC4a LINE L1 5719 5844 -1964 27 0 0 0 chr3 49855225 49855252 -168181906 + AT_rich Low_complexity Low_complexity 1 27 0 195 336 150 0 chr3 49855401 49855514 -168181644 + MIR3 SINE MIR 48 177 -31 507 248 0 24 chr3 49855981 49856106 -168181052 - LTR67 LTR ERVL -9 548 427 1010 301 45 43 chr3 49856805 49857224 -168179934 - MLT1K LTR MaLR -43 545 126 218 283 35 62 chr3 49857986 49858099 -168179059 - MIR SINE MIR -82 126 17 470 285 95 11 chr3 49858208 49858387 -168178771 + LTR16C LTR ERVL 101 294 -197 953 162 17 23 chr3 49858387 49858560 -168178598 + MER5A DNA MER1_type 14 185 -4 446 317 68 0 chr3 49858590 49858751 -168178407 + LTR16C LTR ERVL 312 483 -8 190 238 0 0 chr3 49858855 49858897 -168178261 + MIR SINE MIR 88 129 -133 294 273 13 0 chr3 49859831 49859908 -168177250 + (CATATA)n Simple_repeat Simple_repeat 3 80 0 228 319 44 11 chr3 49859946 49860037 -168177121 + MIR SINE MIR 161 254 -8 224 0 0 61 chr3 49860561 49860577 -168176581 + (CAA)n Simple_repeat Simple_repeat 1 16 -15 2261 58 40 0 chr3 49860577 49860851 -168176307 + AluY SINE Alu 2 286 -25 224 0 0 61 chr3 49860851 49860867 -168176291 + (CAA)n Simple_repeat Simple_repeat 16 31 0 1963 127 32 7 chr3 49861096 49861380 -168175778 + AluSx SINE Alu 1 291 -21 802 227 31 20 chr3 49861942 49862181 -168174977 - L1MB8 LINE L1 -1 6177 5938 425 331 24 12 chr3 49862428 49862594 -168174564 - MIR SINE MIR -93 169 2 324 0 0 0 chr3 49863985 49864021 -168173137 + (TG)n Simple_repeat Simple_repeat 1 36 0 300 284 16 38 chr3 49864064 49864247 -168172911 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 988 221 83 39 chr3 49864292 49864677 -168172481 + L1MC5 LINE L1 7521 7922 -39 2745 204 36 0 chr3 49865710 49866211 -168170947 - MLT2B1 LTR ERVL -1 519 1 192 320 0 0 chr3 49867000 49867050 -168170108 - L2 LINE L2 -8 3305 3256 23 33 0 0 chr3 49867070 49867100 -168170058 + AT_rich Low_complexity Low_complexity 1 30 0 467 308 48 0 chr3 49867100 49867246 -168169912 - MIR SINE MIR -1 261 109 247 250 343 14 chr3 49867944 49868084 -168169074 + MER5A DNA MER1_type 4 189 0 813 204 23 11 chr3 49868090 49868266 -168168892 - MER5B DNA MER1_type 0 178 1 243 88 0 0 chr3 49869134 49869168 -168167990 + (T)n Simple_repeat Simple_repeat 1 34 0 390 42 0 0 chr3 49870842 49870890 -168166268 + (ATG)n Simple_repeat Simple_repeat 3 50 0 264 278 174 17 chr3 49871247 49871362 -168165796 + MIR3 SINE MIR 62 194 -14 191 250 69 28 chr3 49872466 49872538 -168164620 + MIR3 SINE MIR 125 199 -9 552 259 114 6 chr3 49873064 49873222 -168163936 + LTR16A1 LTR ERVL 280 454 -3 2190 101 7 17 chr3 49873588 49873885 -168163273 - AluSc SINE Alu -15 294 1 228 253 13 53 chr3 49873914 49873989 -168163169 + CT-rich Low_complexity Low_complexity 4 75 0 357 158 0 0 chr3 49874427 49874484 -168162674 - MLT1E3 LTR MaLR 0 624 568 528 127 13 0 chr3 49874485 49874564 -168162594 + MADE1 DNA Mariner 1 80 0 * 1117 205 76 115 chr3 49874564 49874996 -168162162 - MLT1E3 LTR MaLR -55 569 155 396 154 0 39 chr3 49875146 49875224 -168161934 - Charlie3 DNA MER1_type -2635 75 1 6703 186 60 10 chr3 49875226 49876467 -168160691 + MSTB-int LTR MaLR 348 1651 0 2350 158 69 8 chr3 49876477 49876870 -168160288 + MSTB LTR MaLR 6 422 -4 435 307 31 25 chr3 49876911 49877074 -168160084 - L3 LINE CR1 -140 1437 1274 199 287 58 23 chr3 49877503 49877590 -168159568 - MIR SINE MIR -49 213 124 2333 185 107 13 chr3 49877811 49878271 -168158887 + MLT1D LTR MaLR 3 505 0 630 276 152 19 chr3 49878338 49878714 -168158444 - LTR16C LTR ERVL 0 491 37 2306 92 7 0 chr3 49878877 49879170 -168157988 + AluSc SINE Alu 1 295 -14 405 0 0 0 chr3 49879690 49879735 -168157423 + (CTGGGG)n Simple_repeat Simple_repeat 3 47 0 511 220 220 6 chr3 49880314 49880473 -168156685 - MIR SINE MIR 0 262 70 375 343 28 0 chr3 49880497 49880640 -168156518 + L3 LINE CR1 519 665 -912 231 204 0 0 chr3 49881726 49881780 -168155378 + CT-rich Low_complexity Low_complexity 3 56 0 183 80 0 0 chr3 49882256 49882281 -168154877 + (GA)n Simple_repeat Simple_repeat 1 25 0 730 147 217 13 chr3 49882439 49882596 -168154562 - MER53 DNA DNA 0 189 1 634 272 63 5 chr3 49882608 49882814 -168154344 - LTR33 LTR ERVL 0 521 304 307 346 15 22 chr3 49882864 49883000 -168154158 - LTR33 LTR ERVL -384 137 3 267 31 0 0 chr3 49883178 49883210 -168153948 + (TG)n Simple_repeat Simple_repeat 1 32 0 1446 199 25 31 chr3 49883211 49883519 -168153639 - MLT2D LTR ERVL -90 324 17 1944 147 98 14 chr3 49883519 49883865 -168153293 - THE1C LTR MaLR 0 375 1 1446 199 25 31 chr3 49883865 49883882 -168153276 - MLT2D LTR ERVL -397 17 1 392 314 103 16 chr3 49885324 49885509 -168151649 - L2 LINE L2 -561 2753 2553 797 327 80 10 chr3 49885534 49885947 -168151211 + LTR16B LTR ERVL 23 464 0 551 179 179 0 chr3 49885964 49886070 -168151088 - AluSq/x SINE Alu -187 126 2 797 257 44 5 chr3 49886628 49886792 -168150366 + MIR SINE MIR 33 208 -54 2014 85 0 0 chr3 49886792 49887040 -168150118 + AluY SINE Alu 61 308 -3 797 257 44 5 chr3 49887040 49887081 -168150077 + MIR SINE MIR 208 246 -16 204 318 0 32 chr3 49887097 49887160 -168149998 + MIR3 SINE MIR 105 165 -43 287 271 147 79 chr3 49887257 49887434 -168149724 + L2 LINE L2 3082 3270 -2 632 249 133 21 chr3 49887480 49887713 -168149445 - MIR SINE MIR -2 260 2 1820 173 50 64 chr3 49887769 49888145 -168149013 + MLT1A2 LTR MaLR 4 374 0 261 265 145 0 chr3 49888625 49888708 -168148450 - MIR SINE MIR -60 148 54 255 296 61 49 chr3 49889384 49889631 -168147527 + L1M4 LINE L1 3587 3836 -2310 925 294 48 48 chr3 49889738 49890258 -168146900 + LTR33 LTR ERVL 2 521 0 543 302 123 44 chr3 49890366 49891008 -168146150 + L1M4 LINE L1 2875 3626 -2520 14306 135 23 97 chr3 49891237 49892342 -168144816 + Tigger2 DNA MER2_type 89 1274 -1444 7913 36 6 0 chr3 49892342 49893479 -168143679 + L1PA5 LINE L1 5008 6149 -5 14306 135 23 97 chr3 49893479 49895212 -168141946 + Tigger2 DNA MER2_type 1274 2717 -1 6514 203 26 15 chr3 49895236 49897472 -168139686 - L1MB8 LINE L1 -115 6561 4296 5541 228 65 59 chr3 49897543 49898078 -168139080 - L1MB8 LINE L1 -2324 4320 3790 740 200 0 0 chr3 49898078 49898193 -168138965 - FRAM SINE Alu -22 154 40 5541 228 65 59 chr3 49898193 49900202 -168136956 - L1MB8 LINE L1 -2854 3790 1628 4215 254 103 41 chr3 49900215 49900846 -168136312 - L1MB8 LINE L1 -4976 1566 976 2328 106 0 3 chr3 49900846 49901157 -168136001 - AluSg SINE Alu 0 310 1 4215 254 103 41 chr3 49901157 49901561 -168135597 - L1MB8 LINE L1 -5566 976 599 1030 139 70 0 chr3 49901561 49901748 -168135410 - L1MA5A LINE L1 -5 6292 6093 4215 254 103 41 chr3 49901748 49902161 -168134997 - L1MB8 LINE L1 -5943 599 27 22 0 0 0 chr3 49902946 49902968 -168134190 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr3 49903430 49903475 -168133683 + AT_rich Low_complexity Low_complexity 1 45 0 21 57 0 0 chr3 49903588 49903623 -168133535 + AT_rich Low_complexity Low_complexity 1 35 0 1948 169 43 46 chr3 49904043 49904434 -168132724 - MLT1B LTR MaLR 0 390 1 22 35 0 0 chr3 49904617 49904646 -168132512 + AT_rich Low_complexity Low_complexity 1 29 0 270 0 0 0 chr3 49904710 49904740 -168132418 + (CA)n Simple_repeat Simple_repeat 2 31 0 548 250 96 39 chr3 49904784 49905220 -168131938 + L1M4 LINE L1 2841 3301 -2845 838 285 66 66 chr3 49905300 49905473 -168131685 - L1ME3A LINE L1 -341 5829 5657 1108 164 57 0 chr3 49905473 49905650 -168131508 + MER5A DNA MER1_type 1 187 -2 838 285 66 66 chr3 49905650 49906004 -168131154 - L1ME3A LINE L1 -513 5657 5287 2514 77 0 3 chr3 49906004 49906316 -168130842 - AluY SINE Alu 0 311 1 838 285 66 66 chr3 49906316 49906568 -168130590 - L1ME3A LINE L1 -883 5287 5036 2731 173 9 2 chr3 49907321 49907744 -168129414 + MSTB LTR MaLR 1 426 0 214 268 0 0 chr3 49907795 49907851 -168129307 + A-rich Low_complexity Low_complexity 3 58 0 424 325 31 11 chr3 49908172 49908363 -168128795 - L2 LINE L2 -3 3310 3116 221 286 80 36 chr3 49908869 49908981 -168128177 - L2 LINE L2 -407 2907 2791 970 86 16 8 chr3 49909029 49909157 -168128001 + AluSg/x SINE Alu 115 243 -69 1037 78 8 0 chr3 49909157 49909286 -168127872 - AluSp SINE Alu -183 130 1 333 299 31 77 chr3 49909294 49909488 -168127670 + L1ME4a LINE L1 5603 5787 -334 628 266 76 30 chr3 49909664 49909901 -168127257 + L1ME1 LINE L1 5405 5652 -469 287 271 0 0 chr3 49910157 49910227 -168126931 + L1ME1 LINE L1 6043 6112 -54 1004 204 121 14 chr3 49910238 49910527 -168126631 - MER63B DNA MER1_type -107 329 10 1156 196 156 50 chr3 49910822 49911180 -168125978 + LTR16A1 LTR ERVL 62 457 0 231 192 58 0 chr3 49911794 49911846 -168125312 - L2 LINE L2 -2 3311 3257 754 291 45 22 chr3 49911849 49912234 -168124924 - LTR16A LTR ERVL 0 457 16 309 208 26 13 chr3 49912256 49912333 -168124825 - L2 LINE L2 -65 3248 3171 304 294 22 29 chr3 49912342 49912478 -168124680 + L1ME4a LINE L1 5987 6121 0 2311 78 10 3 chr3 49912506 49912800 -168124358 + AluSp SINE Alu 1 296 -17 238 224 342 66 chr3 49912994 49913190 -168123968 + MIR SINE MIR 6 255 -7 783 296 88 19 chr3 49914117 49914593 -168122565 - L1ME4a LINE L1 -21 6100 5592 403 218 20 10 chr3 49914595 49914696 -168122462 + MIR SINE MIR 96 197 -65 180 125 0 0 chr3 49914750 49914782 -168122376 + (CATTC)n Simple_repeat Simple_repeat 1 32 0 197 83 28 0 chr3 49915210 49915246 -168121912 + (CA)n Simple_repeat Simple_repeat 2 38 0 461 273 33 33 chr3 49915989 49916139 -168121019 - MIR SINE MIR -82 180 31 1309 233 104 61 chr3 49916588 49917078 -168120080 - MLT1H LTR MaLR -27 522 12 583 215 190 13 chr3 49917127 49917285 -168119873 - MER5A DNA MER1_type 0 189 4 403 346 0 0 chr3 49918387 49918514 -168118644 - MIR3 SINE MIR -1 207 81 462 346 112 5 chr3 49918982 49919168 -168117990 - MIR SINE MIR -40 222 17 204 370 50 50 chr3 49919168 49919287 -168117871 - MER5A DNA MER1_type 0 189 71 1057 217 203 46 chr3 49919398 49919812 -168117346 - MLT1H LTR MaLR -65 484 6 555 273 91 28 chr3 49920010 49920296 -168116862 - HAL1 LINE L1 -9 2498 2195 773 289 17 17 chr3 49920319 49920554 -168116604 - HAL1 LINE L1 -2272 235 1 29 0 0 0 chr3 49920683 49920712 -168116446 + AT_rich Low_complexity Low_complexity 1 29 0 363 235 0 12 chr3 49920722 49920803 -168116355 - L2 LINE L2 -54 3259 3180 217 227 40 0 chr3 49920813 49920888 -168116270 + (TA)n Simple_repeat Simple_repeat 1 78 0 357 287 47 108 chr3 49920893 49921465 -168115693 - HAL1 LINE L1 -1160 1347 811 1703 134 33 7 chr3 49921511 49921840 -168115318 - AluJb SINE Alu 0 336 1 410 273 143 20 chr3 49922184 49922391 -168114767 - MLT1L LTR MaLR 0 588 369 252 325 82 34 chr3 49922501 49922707 -168114451 - MLT1L LTR MaLR -399 216 1 798 284 114 53 chr3 49923526 49924210 -168112948 + L1ME4a LINE L1 5265 6007 -114 1646 174 25 0 chr3 49924210 49924526 -168112632 - MER33 DNA MER1_type 0 324 1 798 284 114 53 chr3 49924526 49924647 -168112511 + L1ME4a LINE L1 6007 6119 -2 569 231 45 80 chr3 49925428 49925627 -168111531 - L2 LINE L2 -4 3309 3118 631 198 0 9 chr3 49925628 49925744 -168111414 + L1MB2 LINE L1 5677 5791 -380 1626 196 13 82 chr3 49925777 49926169 -168110989 - MLT1A1 LTR MaLR 0 365 1 8646 200 38 19 chr3 49926171 49927865 -168109293 - MLT1A1-int LTR MaLR -8 1727 1 2009 185 19 14 chr3 49927865 49928228 -168108930 - MLT1A1 LTR MaLR 0 365 1 2375 142 16 3 chr3 49928228 49928602 -168108556 + L1MB2 LINE L1 5792 6170 -1 1046 235 119 13 chr3 49928637 49929074 -168108084 - L2 LINE L2 -217 3096 2619 198 143 0 0 chr3 49929096 49929131 -168108027 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 551 286 53 18 chr3 49929198 49929369 -168107789 + MER77 LTR ERV1 54 230 -375 850 259 58 76 chr3 49929421 49929898 -168107260 + MER77 LTR ERV1 231 672 -4 1203 230 0 5 chr3 49929988 49930205 -168106953 + MER58A DNA MER1_type 1 216 -8 2335 211 56 37 chr3 49930558 49930628 -168106530 + MER119 DNA MER1_type 1 68 -515 1489 145 15 98 chr3 49930628 49930966 -168106192 + AluJb SINE Alu 1 310 -2 2335 211 56 37 chr3 49930966 49931463 -168105695 + MER119 DNA MER1_type 68 579 -4 646 256 46 25 chr3 49933026 49933245 -168103913 + MLT1H LTR MaLR 45 271 -295 1724 167 22 29 chr3 49933250 49933562 -168103596 + AluJo SINE Alu 1 310 -2 378 42 0 0 chr3 49933585 49933633 -168103525 + (CA)n Simple_repeat Simple_repeat 1 48 0 180 0 0 0 chr3 49933632 49933652 -168103506 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 547 224 97 0 chr3 49933675 49933814 -168103344 + MLT1H LTR MaLR 421 549 0 514 289 36 26 chr3 49933814 49934008 -168103150 - MIR SINE MIR -52 210 15 657 286 89 5 chr3 49934276 49934489 -168102669 - MIR SINE MIR -12 250 20 240 35 0 0 chr3 49935096 49935125 -168102033 + (CA)n Simple_repeat Simple_repeat 2 30 0 363 229 48 0 chr3 49936464 49936547 -168100611 + MIR SINE MIR 86 172 -90 2078 131 3 3 chr3 49936822 49937128 -168100030 + AluSx SINE Alu 1 306 -6 374 291 10 0 chr3 49937601 49937704 -168099454 - MIR SINE MIR -63 145 42 1149 223 172 31 chr3 49940664 49941054 -168096104 + LTR16A1 LTR ERVL 1 445 -12 379 235 15 98 chr3 49941238 49941370 -168095788 - LTR33A LTR ERVL -402 121 1 22 35 0 0 chr3 49942066 49942095 -168095063 + AT_rich Low_complexity Low_complexity 1 29 0 329 194 15 0 chr3 49942432 49942499 -168094659 - L2 LINE L2 0 3313 3246 233 239 11 80 chr3 49942599 49942687 -168094471 - L2 LINE L2 0 3313 3232 408 233 44 98 chr3 49942733 49943080 -168094078 + MLT1H LTR MaLR 95 536 -13 376 295 29 50 chr3 49943714 49943823 -168093335 + L1MEd LINE L1 262 369 -5750 2156 155 32 87 chr3 49943823 49944261 -168092897 + MLT2D LTR ERVL 1 414 0 376 295 29 50 chr3 49944261 49944290 -168092868 + L1MEd LINE L1 369 397 -5722 752 321 10 22 chr3 49944380 49944691 -168092467 + L1MEd LINE L1 533 839 -5280 306 188 31 16 chr3 49944694 49944758 -168092400 + MIR SINE MIR 72 136 -126 209 370 0 0 chr3 49944753 49944834 -168092324 + MER5A DNA MER1_type 109 189 0 * 180 111 0 0 chr3 49945940 49945967 -168091191 + (T)n Simple_repeat Simple_repeat 1 27 0 1251 287 71 13 chr3 49946646 49947026 -168090132 + L2 LINE L2 2911 3312 -1 1473 241 84 62 chr3 49947536 49948214 -168088944 - L1ME LINE L1 -715 5447 4742 1758 163 25 4 chr3 49948214 49948491 -168088667 - AluSx SINE Alu -29 283 1 1473 241 84 62 chr3 49948491 49948734 -168088424 - L1ME LINE L1 -1420 4742 4506 2044 270 58 46 chr3 49948814 49949419 -168087739 - L1ME LINE L1 -1776 4370 3773 303 28 0 0 chr3 49949419 49949455 -168087703 + (TG)n Simple_repeat Simple_repeat 1 36 0 2044 270 58 46 chr3 49949455 49949969 -168087189 - L1ME LINE L1 -2373 3773 3233 2010 117 30 27 chr3 49949969 49950268 -168086890 - AluSx SINE Alu -12 300 1 2044 270 58 46 chr3 49950268 49950398 -168086760 - L1ME LINE L1 -2913 3233 3106 335 298 113 26 chr3 49950764 49950915 -168086243 - MLT1K LTR MaLR -423 165 2 240 282 0 13 chr3 49950918 49950996 -168086162 + GA-rich Low_complexity Low_complexity 4 80 0 874 139 58 90 chr3 49951107 49951158 -168086000 + ORSL DNA AcHobo 35 86 -189 2414 66 3 7 chr3 49951158 49951459 -168085699 + AluY SINE Alu 1 300 -11 874 139 58 90 chr3 49951459 49951630 -168085528 + ORSL DNA AcHobo 86 250 -25 1155 245 54 9 chr3 49951675 49952065 -168085093 + LTR16C LTR ERVL 50 491 0 599 175 10 0 chr3 49952070 49952173 -168084985 + MSTA LTR MaLR 2 105 -323 1925 155 59 20 chr3 49952247 49952588 -168084570 + MSTA LTR MaLR 75 428 0 478 255 143 51 chr3 49953425 49953621 -168083537 + MIR SINE MIR 1 214 -48 1801 94 16 4 chr3 49954325 49954569 -168082589 + THE1B LTR MaLR 1 247 -117 1045 216 0 6 chr3 49955527 49955703 -168081455 - MER45A DNA AcHobo -3 175 1 262 305 180 0 chr3 49956479 49956607 -168080551 + L2 LINE L2 3122 3272 0 1116 212 141 16 chr3 49956686 49957054 -168080104 - LTR16A1 LTR ERVL 0 457 44 410 294 95 9 chr3 49957449 49957680 -168079478 + L2 LINE L2 2727 2977 -337 275 298 10 39 chr3 49957773 49957877 -168079281 + L2 LINE L2 3158 3258 -55 254 342 49 16 chr3 49957918 49958102 -168079056 - L2 LINE L2 -939 2375 2186 262 281 146 21 chr3 49960820 49960916 -168076242 + MIR SINE MIR 16 123 -85 444 19 0 0 chr3 49960918 49960971 -168076187 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 534 249 169 63 chr3 49961173 49961551 -168075607 + MLT1H LTR MaLR 132 549 0 415 325 208 10 chr3 49962794 49963280 -168073878 + L2 LINE L2 2490 3068 -245 634 261 20 20 chr3 49966751 49966946 -168070212 + L1MC5 LINE L1 7249 7443 -518 15783 123 12 37 chr3 49966965 49967139 -168070019 - Tigger1 DNA MER2_type 0 2418 2241 2221 123 0 3 chr3 49967139 49967449 -168069709 + AluSx SINE Alu 1 309 -3 15783 123 12 37 chr3 49967449 49967881 -168069277 - Tigger1 DNA MER2_type -177 2241 1800 2099 128 0 10 chr3 49967881 49968179 -168068979 - AluSg SINE Alu -15 295 1 15783 123 12 37 chr3 49968179 49968332 -168068826 - Tigger1 DNA MER2_type -618 1800 1645 845 170 0 22 chr3 49968332 49968467 -168068691 - FLAM_A SINE Alu 0 133 2 15783 123 12 37 chr3 49968467 49970184 -168066974 - Tigger1 DNA MER2_type -773 1645 1 236 230 162 18 chr3 49970200 49970422 -168066736 + L1MC5 LINE L1 7480 7733 -228 336 231 115 20 chr3 49970423 49970570 -168066588 + L1MC5 LINE L1 7792 8038 -4 3577 153 20 85 chr3 49971275 49971424 -168065734 - LTR8 LTR ERV1 0 691 534 2148 109 0 3 chr3 49971424 49971746 -168065412 + AluSx SINE Alu 1 321 0 3577 153 20 85 chr3 49971746 49972334 -168064824 - LTR8 LTR ERV1 -157 534 1 250 255 38 32 chr3 49973659 49973769 -168063389 + LTR33 LTR ERVL 1 136 -385 339 333 40 53 chr3 49975245 49975623 -168061535 - L1M4 LINE L1 -3598 2548 2176 231 189 0 0 chr3 49977261 49977314 -168059844 + GA-rich Low_complexity Low_complexity 2 54 0 218 295 85 70 chr3 49978203 49978332 -168058826 - L2 LINE L2 0 3272 3142 200 318 55 18 chr3 49978919 49979029 -168058129 + L2 LINE L2 925 1038 -2276 277 280 201 34 chr3 49979168 49979461 -168057697 + L2 LINE L2 1536 1877 -1437 1713 184 0 17 chr3 49979594 49979893 -168057265 - AluJb SINE Alu -18 294 1 263 291 58 10 chr3 49980020 49980123 -168057035 + L2 LINE L2 3182 3289 -24 568 184 184 20 chr3 49980217 49980369 -168056789 - MER5A DNA MER1_type 0 189 13 1249 261 19 52 chr3 49981638 49981740 -168055418 + MLT1H LTR MaLR 5 109 -440 2235 117 7 3 chr3 49981740 49982049 -168055109 + AluSx SINE Alu 1 310 -2 1249 261 19 52 chr3 49982049 49982368 -168054790 + MLT1H LTR MaLR 109 412 -137 1652 153 41 7 chr3 49983321 49983616 -168053542 - AluJb SINE Alu -7 305 1 337 71 88 35 chr3 49983646 49983816 -168053342 + (TA)n Simple_repeat Simple_repeat 2 180 0 1878 152 0 7 chr3 49984045 49984334 -168052824 - AluSx SINE Alu -25 287 1 435 324 202 0 chr3 49984344 49984616 -168052542 + LTR33 LTR ERVL 126 452 -69 393 216 34 0 chr3 49984616 49984704 -168052454 - MER4E LTR ERV1 0 766 676 4020 158 22 56 chr3 49984761 49985567 -168051591 - MER4E LTR ERV1 0 779 1 21 0 0 0 chr3 49985639 49985660 -168051498 + AT_rich Low_complexity Low_complexity 1 21 0 269 254 16 0 chr3 49986032 49986095 -168051063 + L2 LINE L2 3250 3313 0 837 149 0 57 chr3 49987556 49987697 -168049461 + FLAM_C SINE Alu 1 133 0 527 155 147 0 chr3 49987993 49988109 -168049049 - MER3 DNA MER1_type 0 209 77 1105 295 99 0 chr3 49988975 49989348 -168047810 - LTR16C LTR ERVL -2 489 80 350 317 43 6 chr3 49989713 49989877 -168047281 + MLT1K LTR MaLR 415 584 -4 823 311 53 50 chr3 49990392 49990791 -168046367 + LTR16C LTR ERVL 90 489 -2 4446 80 3 18 chr3 49990894 49991521 -168045637 - L1P LINE L1 -5520 626 9 1361 211 4 4 chr3 49991544 49991795 -168045363 - AluJb SINE Alu -61 251 1 775 237 105 0 chr3 49991800 49991842 -168045316 - L1 LINE L1 -3064 2970 2934 1735 179 36 20 chr3 49991842 49992144 -168045014 - AluJo SINE Alu -5 307 1 775 237 105 0 chr3 49992144 49992320 -168044838 - L1 LINE L1 -3100 2934 2729 1306 265 26 9 chr3 49992335 49992675 -168044483 - L1 LINE L1 -5608 347 2 286 250 62 90 chr3 49993700 49993844 -168043314 + MIR SINE MIR 117 256 -6 6194 130 10 8 chr3 49994097 49995077 -168042081 - L1MA4A LINE L1 -24 6279 5298 227 288 62 0 chr3 49995194 49995274 -168041884 - HAL1 LINE L1 -1089 1418 1334 306 298 81 8 chr3 49995290 49995414 -168041744 - HAL1 LINE L1 -1215 1292 1160 21 0 0 0 chr3 49995543 49995564 -168041594 + AT_rich Low_complexity Low_complexity 1 21 0 6266 152 17 30 chr3 49995682 49996894 -168040264 + L1 LINE L1 4137 5333 -813 * 15582 178 59 4 chr3 49996891 50000205 -168036953 + L1M1 LINE L1 12 3750 -3815 525 71 0 0 chr3 50000205 50000275 -168036883 + (CA)n Simple_repeat Simple_repeat 2 71 0 15582 178 59 4 chr3 50000275 50001736 -168035422 + L1M1 LINE L1 3750 5130 -2435 702 93 0 46 chr3 50001734 50001842 -168035316 - L1MA8 LINE L1 -302 5989 5887 * 1447 176 29 0 chr3 50001842 50002113 -168035045 + L1MA8 LINE L1 6011 6291 0 248 225 163 12 chr3 50002141 50002221 -168034937 - HAL1 LINE L1 -1681 826 735 1996 9 0 0 chr3 50002374 50002587 -168034571 - L1PA2 LINE L1 -3 6152 5940 1317 219 36 7 chr3 50003582 50003883 -168033275 + AluJb SINE Alu 1 310 -2 268 203 60 120 chr3 50003998 50004131 -168033027 - HAL1 LINE L1 -1893 614 490 1414 166 70 75 chr3 50005074 50005424 -168031734 - MLT2C1 LTR ERVL -50 414 1 241 225 14 14 chr3 50006521 50006592 -168030566 - L1ME3A LINE L1 -5 6165 6095 506 248 46 0 chr3 50006679 50006788 -168030370 - MER81 DNA DNA 0 114 1 402 345 31 16 chr3 50007527 50007718 -168029440 + MIR SINE MIR 56 249 -13 23 33 0 0 chr3 50007742 50007772 -168029386 + AT_rich Low_complexity Low_complexity 1 30 0 352 277 43 27 chr3 50008188 50008385 -168028773 + MLT1J1 LTR MaLR 249 446 0 362 269 200 23 chr3 50008467 50008642 -168028516 - L2 LINE L2 -540 2774 2569 201 39 0 0 chr3 50008642 50008668 -168028490 + (GA)n Simple_repeat Simple_repeat 1 26 0 186 210 274 0 chr3 50009004 50009066 -168028092 - L2 LINE L2 -42 3230 3152 19823 29 2 2 chr3 50009463 50012453 -168024705 + L1PA3 LINE L1 3167 6155 0 32 0 0 0 chr3 50012453 50012485 -168024673 + AT_rich Low_complexity Low_complexity 1 32 0 2081 87 47 49 chr3 50013601 50013945 -168023213 - L1MA2 LINE L1 0 6304 5962 386 243 136 0 chr3 50013978 50014118 -168023040 + LTR16C LTR ERVL 299 457 -34 842 219 115 50 chr3 50014557 50014931 -168022227 + MLT1F1 LTR MaLR 207 567 0 321 68 0 0 chr3 50015701 50015745 -168021413 + (GA)n Simple_repeat Simple_repeat 1 44 0 420 238 275 16 chr3 50015900 50016089 -168021069 - MIR SINE MIR -6 256 19 374 285 116 33 chr3 50016412 50016654 -168020504 - MIR SINE MIR 0 262 1 274 208 39 26 chr3 50017113 50017190 -168019968 - MIR SINE MIR -73 135 58 424 31 66 61 chr3 50018212 50018448 -168018710 + (TA)n Simple_repeat Simple_repeat 1 237 0 12717 169 89 56 chr3 50018575 50019641 -168017517 - L1 LINE L1 -1300 5548 4518 2249 105 0 3 chr3 50019641 50019937 -168017221 - AluSq SINE Alu -18 295 1 12717 169 89 56 chr3 50019937 50020509 -168016649 - L1 LINE L1 -2330 4518 3966 1569 176 73 0 chr3 50020509 50020798 -168016360 - AluJb SINE Alu 0 312 3 12717 169 89 56 chr3 50020798 50024529 -168012629 - L1 LINE L1 -2882 3966 7 911 292 49 34 chr3 50025041 50025428 -168011730 - LTR16C LTR ERVL -2 489 97 268 326 111 26 chr3 50025958 50026148 -168011010 + L2 LINE L2 3057 3262 -10 267 287 165 6 chr3 50027222 50027386 -168009772 - MIR SINE MIR -41 221 32 1064 314 201 8 chr3 50028173 50028814 -168008344 + L2 LINE L2 2201 2965 -349 703 236 96 14 chr3 50029939 50030147 -168007011 - MIR SINE MIR -21 241 17 232 284 55 79 chr3 50030215 50030342 -168006816 + L2 LINE L2 3138 3261 -11 375 297 169 5 chr3 50031056 50031251 -168005907 - MIR SINE MIR -13 249 23 854 217 0 0 chr3 50031252 50031413 -168005745 + AluSg/x SINE Alu 132 292 -18 208 232 196 0 chr3 50031953 50032009 -168005149 - MIR SINE MIR -83 125 59 322 269 200 25 chr3 50032159 50032319 -168004839 + MIR SINE MIR 57 244 -18 263 343 36 15 chr3 50032457 50032594 -168004564 + MIR3 SINE MIR 4 143 -65 1464 217 89 32 chr3 50032628 50033065 -168004093 + MLT1C LTR MaLR 6 467 0 198 0 0 0 chr3 50033524 50033546 -168003612 + (A)n Simple_repeat Simple_repeat 1 22 0 2248 95 0 52 chr3 50033612 50033938 -168003220 + AluSc SINE Alu 1 309 0 1913 170 0 0 chr3 50034555 50034867 -168002291 + AluSx SINE Alu 1 312 0 24 0 0 0 chr3 50035321 50035345 -168001813 + AT_rich Low_complexity Low_complexity 1 24 0 610 91 0 23 chr3 50035347 50035435 -168001723 + LTR17 LTR ERV1 454 539 -241 24189 43 44 2 chr3 50035499 50038497 -167998661 + L1P LINE L1 5 3126 -3020 294 293 110 46 chr3 50038786 50038947 -167998211 - MIR3 SINE MIR -68 140 10 373 226 98 29 chr3 50040053 50040155 -167997003 + L2 LINE L2 3165 3273 -40 3969 215 53 44 chr3 50040914 50042578 -167994580 - L1MD2 LINE L1 -10 6626 4956 3193 196 27 51 chr3 50042593 50043326 -167993832 - L1MB8 LINE L1 -233 5945 5248 1942 169 0 3 chr3 50043326 50043639 -167993519 + AluSx SINE Alu 1 312 0 3193 196 27 51 chr3 50043639 50043802 -167993356 - L1MB8 LINE L1 -930 5248 5083 2973 192 42 46 chr3 50043800 50044580 -167992578 - L1MB8 LINE L1 -1501 4645 3869 * 4754 243 95 25 chr3 50044551 50045947 -167991211 - L1MD2 LINE L1 -5046 1494 1 36946 92 15 9 chr3 50046061 50052165 -167984993 - L1PA6 LINE L1 -5 6149 11 2935 156 38 6 chr3 50052344 50052865 -167984293 - L1MA9 LINE L1 -12 6300 5763 22 0 0 0 chr3 50052872 50052894 -167984264 + AT_rich Low_complexity Low_complexity 1 22 0 180 176 12 24 chr3 50052894 50052979 -167984179 + (TTATA)n Simple_repeat Simple_repeat 3 86 0 46 68 0 0 chr3 50052980 50053068 -167984090 + AT_rich Low_complexity Low_complexity 1 88 0 5372 158 48 8 chr3 50053069 50054556 -167982602 - L1M2 LINE L1 -508 5804 4260 261 130 222 0 chr3 50054557 50054611 -167982547 - AluJ/FRAM SINE Alu -6 296 231 213 94 0 0 chr3 50054611 50054643 -167982515 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 30307 35 1 1 chr3 50054643 50060293 -167976865 - L1PA3 LINE L1 -13 6142 499 227 219 24 24 chr3 50110966 50111048 -167926110 + (TTTA)n Simple_repeat Simple_repeat 2 83 0 1242 275 46 13 chr3 50111523 50111912 -167925246 - LTR16C LTR ERVL -14 477 76 218 252 193 42 chr3 50111957 50112076 -167925082 - L3 LINE CR1 -153 1424 1288 374 297 108 16 chr3 50112078 50112263 -167924895 - L1M4 LINE L1 -2648 3498 3297 681 226 79 6 chr3 50112270 50112434 -167924724 + MLT1G1 LTR MaLR 3 178 -417 22 35 0 0 chr3 50113291 50113320 -167923838 + AT_rich Low_complexity Low_complexity 1 29 0 183 235 0 0 chr3 50113390 50113441 -167923717 + (TA)n Simple_repeat Simple_repeat 2 52 0 2290 297 160 35 chr3 50113871 50114941 -167922217 - L2 LINE L2 -646 2668 1733 1379 174 27 124 chr3 50114941 50115344 -167921814 + MLT1A1 LTR MaLR 1 364 -1 2290 297 160 35 chr3 50115344 50115972 -167921186 - L2 LINE L2 -1581 1733 758 326 286 60 23 chr3 50116436 50116569 -167920589 + L1MB7 LINE L1 11 148 -6711 1897 153 6 10 chr3 50116670 50116983 -167920175 - AluJo SINE Alu 0 312 1 2663 221 63 15 chr3 50117019 50117748 -167919410 + L1MB7 LINE L1 5358 6121 -836 846 160 70 168 chr3 50117756 50117954 -167919204 - L1M4 LINE L1 -1667 4479 4336 1471 96 25 0 chr3 50117954 50118152 -167919006 + L1PA14 LINE L1 5957 6159 -2 846 160 70 168 chr3 50118152 50118340 -167918818 - L1M4 LINE L1 -1810 4336 4131 * 932 247 33 4 chr3 50118335 50118578 -167918580 + L1MB7 LINE L1 6704 6953 -42 21 57 0 0 chr3 50118584 50118619 -167918539 + AT_rich Low_complexity Low_complexity 1 35 0 529 264 44 6 chr3 50118716 50118875 -167918283 - MIR SINE MIR -48 214 50 466 291 130 52 chr3 50118912 50119207 -167917951 + L1ME LINE L1 2268 2538 -3608 2220 92 0 46 chr3 50119207 50119541 -167917617 - AluSx SINE Alu 0 320 1 466 291 130 52 chr3 50119541 50120447 -167916711 + L1ME LINE L1 2538 3566 -2580 * 471 289 27 44 chr3 50120435 50120509 -167916649 + L1ME LINE L1 5594 5668 -453 2403 92 0 0 chr3 50120509 50120815 -167916343 + AluSc SINE Alu 1 306 -3 471 289 27 44 chr3 50120815 50120849 -167916309 + L1ME LINE L1 5668 5701 -420 1492 135 27 117 chr3 50120849 50121182 -167915976 - AluJo SINE Alu -9 303 1 471 289 27 44 chr3 50121182 50121297 -167915861 + L1ME LINE L1 5701 5814 -307 957 193 148 16 chr3 50121585 50121828 -167915330 + MER2 DNA MER2_type 64 338 -7 980 239 80 14 chr3 50122551 50122840 -167914318 - MLT1H LTR MaLR -15 534 227 1978 127 39 0 chr3 50123862 50124145 -167913013 + AluSx SINE Alu 3 296 -16 332 328 112 16 chr3 50124779 50125084 -167912074 - L2 LINE L2 -1325 1989 1656 * 507 256 31 0 chr3 50125074 50125203 -167911955 + MIR SINE MIR 129 261 -1 564 292 62 95 chr3 50125359 50125633 -167911525 - L2 LINE L2 0 3272 3008 189 307 166 24 chr3 50126191 50126396 -167910762 - L2 LINE L2 -2484 830 597 2179 81 35 39 chr3 50126552 50126862 -167910296 + AluY SINE Alu 1 309 -2 2305 93 3 10 chr3 50127862 50128174 -167908984 - AluSg SINE Alu 0 310 1 497 293 28 84 chr3 50128174 50128593 -167908565 - LTR16A1 LTR ERVL -43 414 18 235 294 0 0 chr3 50129725 50129793 -167907365 + Charlie8 DNA MER1_type 74 141 -2276 498 228 41 8 chr3 50130220 50130342 -167906816 - MIR SINE MIR -27 235 115 2244 125 3 0 chr3 50130624 50130928 -167906230 - AluSx SINE Alu -7 305 1 693 261 100 22 chr3 50131044 50131274 -167905884 - MIR SINE MIR -3 259 12 2545 108 9 0 chr3 50131495 50131829 -167905329 - MER1B DNA MER1_type 0 337 1 263 279 77 0 chr3 50131994 50132115 -167905043 + L1ME LINE L1 5690 5815 -319 662 289 57 40 chr3 50132153 50132551 -167904607 + LTR16B LTR ERVL 6 436 -14 294 53 0 0 chr3 50132758 50132796 -167904362 - tRNA-Cys-TGC tRNA tRNA -37 38 1 290 274 21 11 chr3 50133473 50133568 -167903590 + CT-rich Low_complexity Low_complexity 1 96 0 242 291 17 23 chr3 50134198 50134300 -167902858 - MIR SINE MIR -94 114 12 1306 134 34 0 chr3 50134550 50134759 -167902399 - L1MC3 LINE L1 -169 7616 7401 258 273 23 34 chr3 50135074 50135162 -167901996 + MER5A DNA MER1_type 1 87 -102 26 0 0 0 chr3 50135166 50135192 -167901966 + AT_rich Low_complexity Low_complexity 1 26 0 271 306 126 0 chr3 50135192 50135303 -167901855 + MER5A DNA MER1_type 63 187 -2 182 233 47 0 chr3 50135904 50135947 -167901211 - MIR SINE MIR -60 148 104 187 233 0 0 chr3 50136032 50136075 -167901083 + L2 LINE L2 3230 3272 0 296 320 61 50 chr3 50136152 50136333 -167900825 + MIR SINE MIR 25 207 -55 199 281 150 13 chr3 50136391 50136544 -167900614 - L2 LINE L2 -1105 2209 2036 271 301 196 6 chr3 50136606 50136779 -167900379 + MIR SINE MIR 47 252 -10 995 221 77 0 chr3 50137307 50137515 -167899643 - MER58A DNA MER1_type 0 224 1 2076 239 61 9 chr3 50137559 50138195 -167898963 + L1ME3 LINE L1 5451 6160 -2 211 287 9 102 chr3 50139134 50139193 -167897965 - MIR SINE MIR -6 256 210 1027 196 9 37 chr3 50139193 50139407 -167897751 - MER3 DNA MER1_type 0 209 2 211 287 9 102 chr3 50139407 50139455 -167897703 - MIR SINE MIR -52 210 159 234 271 0 17 chr3 50139457 50139516 -167897642 - MLT1L LTR MaLR -2 613 556 23 97 0 0 chr3 50139543 50139615 -167897543 + AT_rich Low_complexity Low_complexity 1 72 0 410 271 40 26 chr3 50140047 50140198 -167896960 - MIR SINE MIR -108 154 2 194 271 0 0 chr3 50141220 50141268 -167895890 + MIR SINE MIR 96 143 -119 762 280 29 46 chr3 50143314 50143621 -167893537 - MER102b DNA MER1_type -13 328 27 943 229 5 5 chr3 50143641 50143829 -167893329 - MER5A DNA MER1_type -1 188 1 14120 150 17 27 chr3 50144708 50147386 -167889772 - L1M1 LINE L1 -743 6822 4190 347 65 0 0 chr3 50147388 50147434 -167889724 - AluSx SINE Alu -4 296 251 1151 133 0 0 chr3 50147434 50147592 -167889566 - AluSx SINE Alu -146 166 9 6618 160 38 7 chr3 50147593 50148856 -167888302 - L1M1 LINE L1 -3382 4183 1225 562 144 40 48 chr3 50148879 50149004 -167888154 - L1M1 LINE L1 -7426 139 16 421 262 24 16 chr3 50149228 50149354 -167887804 + MIR SINE MIR 21 147 -115 303 352 11 0 chr3 50149563 50149654 -167887504 - MIR SINE MIR -59 149 58 200 176 0 0 chr3 50149837 50149871 -167887287 + (CA)n Simple_repeat Simple_repeat 2 35 0 204 222 0 0 chr3 50149967 50150003 -167887155 + (TG)n Simple_repeat Simple_repeat 2 37 0 247 291 151 17 chr3 50150082 50150254 -167886904 + L2 LINE L2 2625 2819 -495 225 325 73 8 chr3 50150514 50150637 -167886521 + L2 LINE L2 3182 3312 -1 358 272 94 49 chr3 50150982 50151206 -167885952 + MLT1L LTR MaLR 368 601 -14 2675 249 80 68 chr3 50151218 50152256 -167884902 + MER69B DNA AcHobo 17 1073 -1453 2895 85 8 11 chr3 50152256 50152632 -167884526 - THE1C LTR MaLR 0 375 1 2675 249 80 68 chr3 50152632 50152788 -167884370 + MER69B DNA AcHobo 1073 1226 0 412 221 205 31 chr3 50152805 50152932 -167884226 - MIR SINE MIR -59 203 55 284 286 36 50 chr3 50152979 50153119 -167884039 - L2 LINE L2 -181 3091 2954 611 218 18 0 chr3 50153327 50153437 -167883721 + MER81 DNA DNA 1 112 -2 1857 153 0 46 chr3 50153697 50154024 -167883134 - AluJo SINE Alu 0 312 1 283 333 9 26 chr3 50154229 50154343 -167882815 - MER5A DNA MER1_type -43 146 35 230 279 192 34 chr3 50154374 50154582 -167882576 + L1ME4a LINE L1 5621 5861 -260 3159 176 21 8 chr3 50154596 50155180 -167881978 - L1MC2 LINE L1 -10 7981 6208 431 274 29 0 chr3 50155180 50155282 -167881876 - MLT1F1 LTR MaLR -447 120 16 278 294 44 29 chr3 50155332 50155468 -167881690 + L1ME4a LINE L1 5978 6115 -6 538 297 65 57 chr3 50155483 50155850 -167881308 + L3 LINE CR1 667 1036 -541 531 141 0 0 chr3 50155931 50156002 -167881156 - AluJ/FLAM SINE Alu -240 72 2 1557 133 4 0 chr3 50156142 50156367 -167880791 - MSTB1 LTR MaLR -3 429 204 628 124 0 16 chr3 50156371 50156492 -167880666 + (GGA)n Simple_repeat Simple_repeat 3 121 0 760 193 169 5 chr3 50156492 50156699 -167880459 - MSTB1 LTR MaLR -197 229 1 653 286 100 4 chr3 50156702 50156933 -167880225 + LTR16C LTR ERVL 180 432 -59 225 0 0 0 chr3 50157030 50157055 -167880103 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 6419 161 16 6 chr3 50157061 50159168 -167877990 - L1PA16 LINE L1 -9 6157 4033 229 291 119 46 chr3 50159292 50159443 -167877715 + L3 LINE CR1 1157 1318 -259 1902 110 0 11 chr3 50159499 50159781 -167877377 - L1PA15 LINE L1 -3 6162 5884 470 277 79 33 chr3 50159890 50159975 -167877183 + MLT1K LTR MaLR 22 102 -486 1405 126 0 0 chr3 50159975 50160189 -167876969 - L1PA15 LINE L1 -1 6164 5951 470 277 79 33 chr3 50160189 50160360 -167876798 + MLT1K LTR MaLR 102 360 -228 2228 94 26 10 chr3 50160416 50160723 -167876435 + AluSx SINE Alu 1 312 0 226 254 28 0 chr3 50160826 50160897 -167876261 + MLT1K LTR MaLR 515 587 -1 425 317 38 11 chr3 50160940 50161123 -167876035 + L3 LINE CR1 1348 1535 -42 280 336 41 8 chr3 50161935 50162057 -167875101 + MIR SINE MIR 63 188 -74 366 298 112 21 chr3 50162597 50162785 -167874373 - MIR SINE MIR -24 238 34 236 309 0 0 chr3 50162940 50163021 -167874137 - MER5A DNA MER1_type -105 84 4 1063 206 71 94 chr3 50163354 50163820 -167873338 + LTR16A1 LTR ERVL 1 455 -2 227 287 79 10 chr3 50163885 50163986 -167873172 - MIR SINE MIR -96 166 59 5830 92 7 37 chr3 50165098 50165981 -167871177 + L1MA2 LINE L1 5449 6304 0 1093 118 6 6 chr3 50166220 50166398 -167870760 - L1MB3 LINE L1 0 6183 6006 233 100 0 50 chr3 50166398 50166431 -167870727 + L1MB3 LINE L1 5919 5951 -232 941 198 0 59 chr3 50167168 50167370 -167869788 - MER20 DNA MER1_type 0 219 30 23 33 0 0 chr3 50167388 50167418 -167869740 + AT_rich Low_complexity Low_complexity 1 30 0 791 138 25 50 chr3 50167418 50167577 -167869581 + MER53 DNA DNA 35 189 0 254 162 0 0 chr3 50167579 50167616 -167869542 - MER20 DNA MER1_type -182 37 1 527 236 18 0 chr3 50167620 50167730 -167869428 - MER81 DNA DNA -1 113 2 797 186 124 41 chr3 50168645 50168839 -167868319 - MER63A DNA MER1_type 0 210 1 398 217 35 35 chr3 50169203 50169318 -167867840 + MIR SINE MIR 8 122 -140 282 227 3 0 chr3 50169730 50169795 -167867363 - MLT1K LTR MaLR -5 610 526 459 209 29 9 chr3 50170056 50170161 -167866997 - MLT1L LTR MaLR -367 248 142 196 306 122 0 chr3 50170940 50171038 -167866120 - MIR SINE MIR 0 262 153 568 291 16 11 chr3 50171090 50171279 -167865879 - MIR SINE MIR -44 218 29 1270 234 69 3 chr3 50171644 50171964 -167865194 + MER58B DNA MER1_type 1 341 0 643 248 134 44 chr3 50172484 50172782 -167864376 + LTR16C LTR ERVL 1 325 -166 265 170 0 21 chr3 50172829 50172876 -167864282 + LTR16C LTR ERVL 445 490 -1 1140 216 35 58 chr3 50173574 50173917 -167863241 - MER46C DNA MER2_type 0 338 4 234 233 50 0 chr3 50174986 50175046 -167862112 - MIR SINE MIR -37 225 163 615 293 69 41 chr3 50175164 50175556 -167861602 + LTR16C LTR ERVL 89 491 0 482 271 124 14 chr3 50176437 50176647 -167860511 + MIR SINE MIR 22 254 -8 678 278 139 51 chr3 50176712 50177223 -167859935 + LTR67 LTR ERVL 2 557 0 233 125 0 0 chr3 50178555 50178587 -167858571 - LTR16A1 LTR ERVL -2 455 424 182 265 29 0 chr3 50179486 50179554 -167857604 + L2 LINE L2 2933 3002 -270 247 331 115 0 chr3 50180676 50180815 -167856343 - MIR SINE MIR -11 251 97 1400 116 10 34 chr3 50180857 50181064 -167856094 - AluSg/x SINE Alu -21 291 90 2443 227 34 51 chr3 50181674 50182384 -167854774 - L1ME3A LINE L1 -1 6169 5472 1780 174 0 10 chr3 50183268 50183578 -167853580 + AluJo SINE Alu 1 307 -5 182 200 0 0 chr3 50183622 50183652 -167853506 - MER5A DNA MER1_type -138 51 22 1592 190 42 73 chr3 50184304 50184714 -167852444 + MLT2C1 LTR ERVL 1 397 0 421 285 67 22 chr3 50185763 50185942 -167851216 + MIR3 SINE MIR 7 193 -15 195 197 171 26 chr3 50187991 50188067 -167849091 + MIR3 SINE MIR 108 194 -14 572 286 92 4 chr3 50188439 50188677 -167848481 + MIR SINE MIR 4 262 0 180 175 0 0 chr3 50189704 50189744 -167847414 + MIR SINE MIR 101 140 -68 305 188 0 194 chr3 50190081 50190246 -167846912 + MER94 DNA DNA 2 134 0 534 256 39 23 chr3 50190319 50190448 -167846710 + MER20B DNA MER1_type 45 175 -608 246 62 0 0 chr3 50190764 50190796 -167846362 + (TG)n Simple_repeat Simple_repeat 1 32 0 200 146 42 42 chr3 50190836 50190884 -167846274 + (TATG)n Simple_repeat Simple_repeat 3 50 0 598 160 130 0 chr3 50191652 50191783 -167845375 - MIR SINE MIR -48 214 67 2290 105 3 7 chr3 50192102 50192406 -167844752 - AluSq SINE Alu -10 303 1 2107 233 46 19 chr3 50192460 50192980 -167844178 - MLT1H LTR MaLR -2 547 14 232 315 0 33 chr3 50193494 50193586 -167843572 - MIR SINE MIR -166 96 8 366 278 135 47 chr3 50194797 50195149 -167842009 - MLT1J2 LTR MaLR 0 450 126 858 161 20 13 chr3 50195400 50195549 -167841609 + FRAM SINE Alu 1 150 -26 1399 241 78 55 chr3 50195593 50196206 -167840952 + L2 LINE L2 2454 3098 -215 627 225 185 11 chr3 50196206 50196384 -167840774 + MER63A DNA MER1_type 1 209 -1 1399 241 78 55 chr3 50196384 50196606 -167840552 + L2 LINE L2 3098 3313 0 1577 145 61 81 chr3 50196897 50197207 -167839951 + AluJb SINE Alu 1 304 -8 358 299 127 26 chr3 50197401 50197709 -167839449 + L1ME LINE L1 5485 5823 -298 727 254 36 0 chr3 50198874 50199039 -167838119 - MIR SINE MIR -82 180 10 335 326 39 0 chr3 50203127 50203256 -167833902 + MARNA DNA Mariner 132 265 -321 7296 215 21 102 chr3 50203312 50205560 -167831598 - L1M4 LINE L1 -1096 5050 2893 1293 14 0 0 chr3 50205560 50205704 -167831454 - AluYa5/8 SINE Alu 0 311 168 7296 215 21 102 chr3 50205704 50205962 -167831196 - L1M4 LINE L1 -3253 2893 2616 2896 212 45 10 chr3 50205957 50206645 -167830513 - L1MDa LINE L1 -5402 1138 13 * 399 321 18 18 chr3 50206853 50207021 -167830137 - L1ME LINE L1 -351 5770 5603 741 159 97 0 chr3 50207438 50207583 -167829575 - MER3 DNA MER1_type 0 209 51 383 286 91 0 chr3 50208971 50209125 -167828033 - MIR SINE MIR -32 230 63 670 266 176 38 chr3 50209329 50209698 -167827460 + LTR16A1 LTR ERVL 72 457 0 1290 173 0 26 chr3 50210243 50210701 -167826457 + AluJo SINE Alu 1 452 0 2417 136 8 8 chr3 50211295 50211685 -167825473 + MLT1B LTR MaLR 1 390 0 266 306 0 0 chr3 50212587 50212672 -167824486 + GA-rich Low_complexity Low_complexity 2 86 0 347 253 53 40 chr3 50213137 50213287 -167823871 - MIR SINE MIR 0 262 111 1720 163 24 7 chr3 50214136 50214431 -167822727 + AluJo SINE Alu 9 308 -4 204 314 57 0 chr3 50214734 50214839 -167822319 + MIR SINE MIR 81 191 -71 459 286 56 6 chr3 50216045 50216206 -167820952 - MIR SINE MIR -74 188 20 2388 131 72 15 chr3 50216510 50216915 -167820243 - MSTA LTR MaLR 0 428 1 1063 230 65 4 chr3 50217106 50217367 -167819791 - LTR16C LTR ERVL -34 457 181 1567 173 28 35 chr3 50217408 50217697 -167819461 + AluJo SINE Alu 9 295 -17 1430 229 48 16 chr3 50219701 50220072 -167817086 - LTR16C LTR ERVL -2 489 107 616 62 0 12 chr3 50220904 50220985 -167816173 + MADE1 DNA Mariner 1 80 0 204 97 0 0 chr3 50221384 50221415 -167815743 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 1338 166 180 38 chr3 50221581 50221632 -167815526 + L1MC4a LINE L1 6911 6953 -855 189 94 0 0 chr3 50221632 50221664 -167815494 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 1338 166 180 38 chr3 50221664 50221744 -167815414 + L1MC4a LINE L1 6953 7020 -788 1822 154 13 29 chr3 50221744 50222056 -167815102 + AluJb SINE Alu 1 307 -5 1338 166 180 38 chr3 50222056 50222290 -167814868 + L1MC4a LINE L1 7020 7329 -479 1881 199 5 38 chr3 50222297 50222342 -167814816 + L1MC4a LINE L1 7431 7476 -332 1852 141 65 0 chr3 50222342 50222633 -167814525 - AluSg SINE Alu 0 310 1 1881 199 5 38 chr3 50222633 50222978 -167814180 + L1MC4a LINE L1 7476 7808 0 1429 253 155 13 chr3 50223320 50223798 -167813360 + MLT1H LTR MaLR 4 549 0 1109 270 95 60 chr3 50226050 50226480 -167810678 - LTR16C LTR ERVL -12 479 35 356 276 55 35 chr3 50226480 50226625 -167810533 + HAL1 LINE L1 1026 1173 -1334 494 260 94 38 chr3 50226651 50226759 -167810399 + MER112 DNA MER1_type 12 113 -147 2488 201 45 52 chr3 50226759 50227317 -167809841 - MLT2B3 LTR ERVL 0 554 1 494 260 94 38 chr3 50227317 50227443 -167809715 + MER112 DNA MER1_type 113 259 -1 1402 270 59 14 chr3 50227445 50227673 -167809485 + HAL1 LINE L1 1214 1430 -1077 2093 139 0 10 chr3 50227673 50227958 -167809200 + AluSq SINE Alu 1 284 -29 192 111 0 0 chr3 50227958 50227994 -167809164 + (TTAA)n Simple_repeat Simple_repeat 3 38 0 2093 139 0 10 chr3 50227994 50228017 -167809141 + AluSq SINE Alu 284 306 -7 1402 270 59 14 chr3 50228017 50228296 -167808862 + HAL1 LINE L1 1430 1744 -763 402 212 143 106 chr3 50228316 50228665 -167808493 + HAL1 LINE L1 1841 2202 -305 181 318 149 0 chr3 50229962 50230069 -167807089 - MIR SINE MIR -65 197 75 2087 150 0 0 chr3 50230297 50230603 -167806555 + AluSx SINE Alu 1 306 -6 254 257 30 50 chr3 50231427 50231528 -167805630 + LTR67 LTR ERVL 458 556 -1 851 260 74 15 chr3 50231958 50232227 -167804931 + MER113 DNA MER1_type? 179 463 -58 801 286 184 18 chr3 50232652 50233086 -167804072 - L2 LINE L2 0 3313 2808 712 100 0 0 chr3 50233972 50234072 -167803086 - L1PB4 LINE L1 -12 6144 6045 1102 259 85 57 chr3 50234639 50234670 -167802488 - MLT1G1 LTR MaLR 0 595 566 1911 166 42 14 chr3 50234670 50235025 -167802133 + MLT1A1 LTR MaLR 1 365 0 1102 259 85 57 chr3 50235025 50235187 -167801971 - MLT1G1 LTR MaLR -29 566 410 1095 221 147 28 chr3 50235187 50235513 -167801645 - MLT1A1 LTR MaLR 0 365 1 1102 259 85 57 chr3 50235513 50235824 -167801334 - MLT1G1 LTR MaLR -185 410 76 720 286 24 28 chr3 50235879 50236158 -167801000 - LTR16A1 LTR ERVL -14 443 158 200 327 39 0 chr3 50236420 50236524 -167800634 - MIR SINE MIR -63 199 92 995 180 18 50 chr3 50236816 50237038 -167800120 + MER20 DNA MER1_type 2 216 -3 719 284 37 37 chr3 50237547 50237846 -167799312 + MARNA DNA Mariner 64 362 -224 219 369 41 8 chr3 50238071 50238120 -167799038 - L2 LINE L2 -38 3234 3188 2209 91 0 7 chr3 50238120 50238447 -167798711 + AluSq SINE Alu 1 325 0 219 369 41 8 chr3 50238447 50238518 -167798640 - L2 LINE L2 -84 3188 3109 233 314 38 0 chr3 50242604 50242709 -167794449 - LTR67 LTR ERVL -17 540 432 21 36 0 0 chr3 50243417 50243445 -167793713 + AT_rich Low_complexity Low_complexity 1 28 0 695 321 40 48 chr3 50244156 50244694 -167792464 + L1ME4a LINE L1 5318 5852 -312 216 246 35 0 chr3 50244883 50244940 -167792218 + A-rich Low_complexity Low_complexity 2 60 0 283 271 128 73 chr3 50245051 50245324 -167791834 - L2 LINE L2 -779 2535 2248 788 271 81 46 chr3 50245432 50245779 -167791379 - MLT1J LTR MaLR -144 367 9 211 330 86 30 chr3 50245796 50245993 -167791165 - L2 LINE L2 -1081 2233 2026 683 252 97 18 chr3 50246004 50246110 -167791048 + LTR16C LTR ERVL 175 271 -220 1764 147 0 86 chr3 50246110 50246436 -167790722 + AluJo SINE Alu 1 298 -14 683 252 97 18 chr3 50246436 50246555 -167790603 + LTR16C LTR ERVL 271 418 -73 433 340 108 26 chr3 50247409 50247900 -167789258 - L2 LINE L2 -436 2878 2348 201 250 0 0 chr3 50248377 50248417 -167788741 + L2 LINE L2 3262 3301 -12 2374 95 3 0 chr3 50248491 50248796 -167788362 - AluSg SINE Alu -3 307 2 2393 94 0 13 chr3 50248797 50249104 -167788054 - AluSg SINE Alu -7 303 1 415 221 14 76 chr3 50250434 50250579 -167786579 + L1ME4a LINE L1 5664 5799 -322 2275 87 24 0 chr3 50250657 50250945 -167786213 - AluSx SINE Alu -17 295 1 728 273 25 73 chr3 50251258 50251346 -167785812 - L1ME4a LINE L1 -227 5894 5803 2315 73 7 13 chr3 50251346 50251647 -167785511 - AluY SINE Alu -12 299 1 728 273 25 73 chr3 50251647 50251913 -167785245 - L1ME4a LINE L1 -318 5803 5557 1294 221 0 8 chr3 50251929 50252183 -167784975 + MER46C DNA MER2_type 39 290 -48 32 0 0 0 chr3 50252751 50252783 -167784375 + AT_rich Low_complexity Low_complexity 1 32 0 2177 98 3 0 chr3 50252783 50253068 -167784090 - AluSx SINE Alu -26 286 1 281 286 188 38 chr3 50253073 50253206 -167783952 + MIR SINE MIR 110 262 0 282 267 60 17 chr3 50254751 50254867 -167782291 + L1ME4a LINE L1 5964 6084 -37 259 305 46 13 chr3 50255189 50255340 -167781818 + L1ME4a LINE L1 5965 6120 -1 234 81 0 0 chr3 50255348 50255385 -167781773 + (T)n Simple_repeat Simple_repeat 1 37 0 260 269 13 0 chr3 50255499 50255577 -167781581 - MER116 DNA Mariner 0 80 2 286 277 50 10 chr3 50255803 50255904 -167781254 - L2 LINE L2 0 3313 3209 751 171 0 16 chr3 50255928 50256084 -167781074 - FLAM_C SINE Alu 0 133 1 2204 92 4 0 chr3 50256224 50256505 -167780653 + AluSp SINE Alu 1 282 -31 378 0 0 0 chr3 50256508 50256550 -167780608 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 208 293 41 32 chr3 50256996 50257119 -167780039 - MIR SINE MIR -119 143 20 186 299 52 0 chr3 50257520 50257597 -167779561 - MIR SINE MIR -14 248 168 487 203 55 39 chr3 50257696 50257824 -167779334 - MER3 DNA MER1_type -79 130 1 202 147 0 0 chr3 50257935 50257969 -167779189 + L2 LINE L2 3278 3311 -2 282 314 33 33 chr3 50258298 50258419 -167778739 - MIR3 SINE MIR -20 188 68 2417 164 0 0 chr3 50258637 50259002 -167778156 + MLT1A1 LTR MaLR 1 365 0 815 306 82 6 chr3 50259025 50259355 -167777803 + L1MC4a LINE L1 5477 5831 -1977 237 296 86 72 chr3 50259359 50259511 -167777647 - MER91A DNA MER1_type 0 196 43 1244 238 122 36 chr3 50261324 50261710 -167775448 - LTR16C LTR ERVL 0 491 73 703 309 28 61 chr3 50262052 50262447 -167774711 - L2 LINE L2 -3 3310 2929 236 330 28 9 chr3 50262617 50262723 -167774435 + L2 LINE L2 3197 3304 -9 469 305 7 7 chr3 50263368 50263519 -167773639 - MIR SINE MIR -92 170 20 356 214 29 0 chr3 50264146 50264216 -167772942 - MLT1K LTR MaLR 0 588 517 421 169 34 22 chr3 50267260 50267349 -167769809 - MER3 DNA MER1_type -119 90 1 685 183 0 0 chr3 50267637 50267752 -167769406 + FLAM_C SINE Alu 2 116 -27 251 202 60 36 chr3 50268062 50268146 -167769012 - L1MC/D LINE L1 -2004 5804 5719 244 238 48 0 chr3 50268148 50268211 -167768947 + L2 LINE L2 3207 3272 0 1505 192 24 3 chr3 50268355 50268642 -167768516 - AluJo SINE Alu -19 293 1 333 233 0 0 chr3 50268694 50268780 -167768378 + MIR3 SINE MIR 111 196 -12 25 0 0 0 chr3 50269167 50269192 -167767966 + AT_rich Low_complexity Low_complexity 1 25 0 216 0 0 0 chr3 50269226 50269250 -167767908 + (A)n Simple_repeat Simple_repeat 1 24 0 202 180 49 66 chr3 50269350 50269411 -167767747 - MIR SINE MIR -108 154 95 258 222 48 0 chr3 50269999 50270062 -167767096 - L2 LINE L2 0 3272 3207 198 103 0 0 chr3 50270233 50270262 -167766896 + (A)n Simple_repeat Simple_repeat 1 29 0 357 251 30 64 chr3 50270374 50270577 -167766581 + L2 LINE L2 3118 3313 0 180 229 57 29 chr3 50270654 50270724 -167766434 + MIR SINE MIR 191 262 0 298 247 65 0 chr3 50270966 50271059 -167766099 + MER113 DNA MER1_type? 10 108 -413 271 200 82 35 chr3 50271125 50271210 -167765948 + MER113 DNA MER1_type? 208 296 -225 231 36 0 0 chr3 50271359 50271387 -167765771 + (TG)n Simple_repeat Simple_repeat 2 29 0 330 275 39 56 chr3 50271415 50271593 -167765565 + L1MEc LINE L1 1948 2122 -4274 336 274 98 43 chr3 50271604 50271768 -167765390 + MER113 DNA MER1_type? 306 478 -43 1261 146 38 9 chr3 50271972 50272185 -167764973 + MER20 DNA MER1_type 1 219 0 719 252 28 19 chr3 50273977 50274191 -167762967 - MIR SINE MIR -2 260 45 579 324 47 5 chr3 50276532 50276745 -167760413 + LTR67 LTR ERVL 40 261 -296 635 312 64 5 chr3 50276790 50276992 -167760166 + LTR67 LTR ERVL 339 552 -5 849 246 148 74 chr3 50277011 50277110 -167760048 - MLT1K LTR MaLR -22 566 476 809 218 79 0 chr3 50277110 50277275 -167759883 - MER45A DNA AcHobo 0 178 1 849 246 148 74 chr3 50277275 50277500 -167759658 - MLT1K LTR MaLR -112 476 218 257 287 2 10 chr3 50277888 50277986 -167759172 + MLT1I LTR MaLR 318 401 -8 237 226 143 12 chr3 50278514 50278598 -167758560 - MER103 DNA DNA -65 101 7 242 241 35 78 chr3 50278949 50279065 -167758093 - MLT1L LTR MaLR 0 615 505 751 202 119 37 chr3 50279451 50279669 -167757489 - L1ME3A LINE L1 -1 6169 5934 759 243 46 14 chr3 50280325 50280543 -167756615 - MIR SINE MIR -1 261 37 887 283 35 29 chr3 50281127 50281488 -167755670 - LTR16A1 LTR ERVL -1 456 126 363 247 11 47 chr3 50281510 50281615 -167755543 + FRAM/FAM SINE Alu 2 87 -79 320 200 0 0 chr3 50281723 50281778 -167755380 + FAM SINE Alu 109 158 -17 1090 165 0 15 chr3 50282345 50282551 -167754607 - L1MB8 LINE L1 0 6178 5976 2071 134 3 3 chr3 50283907 50284206 -167752952 - AluSp SINE Alu 0 313 15 198 96 39 19 chr3 50284678 50284730 -167752428 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 1802 157 37 17 chr3 50284876 50285170 -167751988 + AluJo SINE Alu 1 300 -12 437 279 60 9 chr3 50285590 50285805 -167751353 + L1MC4a LINE L1 4981 5206 -940 459 92 0 0 chr3 50285808 50285873 -167751285 + (GGA)n Simple_repeat Simple_repeat 2 66 0 278 245 184 14 chr3 50285995 50286142 -167751016 + L1MC4a LINE L1 5320 5491 -2317 984 230 58 97 chr3 50286161 50286543 -167750615 - LTR16C LTR ERVL -38 453 87 1349 220 73 86 chr3 50286597 50287119 -167750039 + L1MC4a LINE L1 5486 6000 -1808 21 0 0 0 chr3 50287330 50287351 -167749807 + AT_rich Low_complexity Low_complexity 1 21 0 366 42 0 0 chr3 50287555 50287603 -167749555 + (CA)n Simple_repeat Simple_repeat 2 49 0 492 224 49 28 chr3 50287829 50287972 -167749186 - LTR67 LTR ERVL -2 555 410 289 284 0 0 chr3 50289196 50289263 -167747895 + L2 LINE L2 3205 3271 -1 370 216 72 3 chr3 50289337 50289493 -167747665 + MER3 DNA MER1_type 1 209 0 292 250 17 0 chr3 50289440 50289500 -167747658 - MER3 DNA MER1_type -108 101 41 * 336 240 62 27 chr3 50289500 50289646 -167747512 + MIR SINE MIR 52 202 -60 194 333 29 0 chr3 50289776 50289845 -167747313 - MIR SINE MIR -141 121 51 352 269 83 7 chr3 50290460 50290605 -167746553 + Charlie7 DNA MER1_type 2 157 -2455 262 239 97 9 chr3 50290587 50290700 -167746458 + Charlie7 DNA MER1_type 2484 2606 -6 * 279 176 25 22 chr3 50290791 50290881 -167746277 - MLT1H LTR MaLR -2 576 476 193 250 12 24 chr3 50290911 50290995 -167746163 + L3 LINE CR1 1155 1237 -340 23 0 0 0 chr3 50294558 50294581 -167742577 + AT_rich Low_complexity Low_complexity 1 23 0 32 0 0 0 chr3 50294651 50294683 -167742475 + AT_rich Low_complexity Low_complexity 1 32 0 2070 95 0 41 chr3 50294802 50295119 -167742039 + THE1C LTR MaLR 72 375 0 2001 259 77 75 chr3 50295119 50296155 -167741003 - MER69B DNA AcHobo -172 1054 17 363 272 94 49 chr3 50296167 50296391 -167740767 - MLT1L LTR MaLR -14 601 368 228 317 81 16 chr3 50296737 50296860 -167740298 - L2 LINE L2 -1 3271 3141 712 100 0 0 chr3 50297385 50297485 -167739673 - L1PB4 LINE L1 -12 6144 6045 511 180 113 67 chr3 50298052 50298083 -167739075 - MLT1F LTR MaLR 0 542 514 1885 172 42 14 chr3 50298083 50298438 -167738720 + MLT1A1 LTR MaLR 1 365 0 511 180 113 67 chr3 50298438 50298600 -167738558 - MLT1F LTR MaLR -28 514 340 2124 167 34 0 chr3 50298600 50298953 -167738205 - MLT1A1 LTR MaLR 0 365 1 293 314 33 33 chr3 50299171 50299292 -167737866 + MIR3 SINE MIR 68 188 -20 202 147 0 0 chr3 50299621 50299655 -167737503 - L2 LINE L2 -2 3311 3278 487 203 55 39 chr3 50299766 50299894 -167737264 + MER3 DNA MER1_type 1 130 -79 180 312 52 0 chr3 50299993 50300070 -167737088 + MIR SINE MIR 168 248 -14 719 252 28 19 chr3 50301389 50301603 -167735555 + MIR SINE MIR 45 260 -2 797 186 124 41 chr3 50304088 50304282 -167732876 - MER63A DNA MER1_type 0 210 1 398 217 35 35 chr3 50304646 50304761 -167732397 + MIR SINE MIR 8 122 -140 282 227 3 0 chr3 50305173 50305238 -167731920 - MLT1K LTR MaLR -5 610 526 233 100 0 50 chr3 50307781 50307814 -167729344 - L1MB3 LINE L1 -232 5951 5919 1093 118 6 6 chr3 50307814 50307992 -167729166 + L1MB3 LINE L1 6006 6183 0 5315 96 11 40 chr3 50308231 50309064 -167728094 - L1MA2 LINE L1 0 6304 5496 1574 167 51 7 chr3 50309758 50310033 -167727125 + AluJo SINE Alu 9 295 -17 207 241 23 35 chr3 50310608 50310695 -167726463 + (GGGTG)n Simple_repeat Simple_repeat 5 90 0 304 194 0 0 chr3 50311626 50311693 -167725465 + GA-rich Low_complexity Low_complexity 3 69 0 288 245 184 14 chr3 50311815 50311962 -167725196 + L1MC/D LINE L1 5320 5491 -2317 974 228 78 41 chr3 50311981 50312275 -167724883 - LTR16C LTR ERVL -38 453 149 180 0 0 0 chr3 50312314 50312334 -167724824 + (A)n Simple_repeat Simple_repeat 1 20 0 281 222 48 0 chr3 50312975 50313038 -167724120 - L2 LINE L2 0 3272 3207 255 202 60 36 chr3 50313040 50313124 -167724034 + L1MC/D LINE L1 5719 5804 -2004 735 183 0 0 chr3 50313433 50313548 -167723610 - FLAM_C SINE Alu -27 116 2 992 269 95 57 chr3 50313897 50314320 -167722838 - LTR16C LTR ERVL -11 480 42 294 186 0 17 chr3 50314358 50314417 -167722741 + HAL1 LINE L1 1062 1119 -1388 2332 209 45 56 chr3 50314605 50315140 -167722018 - MLT2B3 LTR ERVL 0 554 26 421 262 24 16 chr3 50315526 50315652 -167721506 - MIR SINE MIR -115 147 21 562 144 40 48 chr3 50315876 50316001 -167721157 + L1M1 LINE L1 16 139 -7426 2110 220 19 12 chr3 50316024 50316505 -167720653 + L1M1 LINE L1 1225 1708 -5857 985 265 0 0 chr3 50316606 50316772 -167720386 + G-rich Low_complexity Low_complexity 1 166 0 857 284 36 23 chr3 50318645 50319004 -167718154 - LTR16A1 LTR ERVL -1 456 126 359 247 11 47 chr3 50319026 50319131 -167718027 + FRAM/FAM SINE Alu 2 87 -79 318 200 0 0 chr3 50319239 50319294 -167717864 + FAM SINE Alu 109 158 -21 229 170 0 0 chr3 50320762 50320809 -167716349 + G-rich Low_complexity Low_complexity 1 47 0 192 149 0 0 chr3 50320860 50320907 -167716251 + (TGGGGG)n Simple_repeat Simple_repeat 4 50 0 245 182 0 0 chr3 50321475 50321519 -167715639 + MER46C DNA MER2_type 247 290 -48 32 0 0 0 chr3 50322087 50322119 -167715039 + AT_rich Low_complexity Low_complexity 1 32 0 633 181 3 133 chr3 50322119 50322450 -167714708 - AluSp SINE Alu -15 288 1 26 30 0 0 chr3 50323174 50323207 -167713951 + AT_rich Low_complexity Low_complexity 1 33 0 428 214 14 76 chr3 50323275 50323420 -167713738 - L1ME LINE L1 -322 5799 5664 553 318 44 55 chr3 50324211 50324750 -167712408 - L1ME2 LINE L1 -312 5852 5318 233 252 43 26 chr3 50324842 50324957 -167712201 + G-rich Low_complexity Low_complexity 4 120 0 2625 203 28 23 chr3 50325650 50326566 -167710592 + L1P5 LINE L1 4764 5681 -475 189 0 0 0 chr3 50326799 50326820 -167710338 + (G)n Simple_repeat Simple_repeat 1 21 0 191 146 24 0 chr3 50327375 50327416 -167709742 + (TG)n Simple_repeat Simple_repeat 2 43 0 180 0 0 0 chr3 50333564 50333584 -167703574 + (T)n Simple_repeat Simple_repeat 1 20 0 548 289 125 17 chr3 50335023 50335310 -167701848 - MER102a DNA MER1_type -12 318 1 1686 132 72 4 chr3 50335950 50336215 -167700943 + AluSx SINE Alu 11 293 -19 2310 284 256 35 chr3 50338175 50340060 -167697098 + L2 LINE L2 189 1656 -1658 6601 122 76 38 chr3 50340060 50340700 -167696458 - Tigger3b DNA MER2_type -1798 1230 616 2513 50 0 7 chr3 50340700 50341003 -167696155 + AluY SINE Alu 1 301 -10 6601 122 76 38 chr3 50341003 50341325 -167695833 - Tigger3b DNA MER2_type -2412 616 212 1718 155 20 30 chr3 50341325 50341621 -167695537 - AluJo SINE Alu -19 293 1 6601 122 76 38 chr3 50341621 50341841 -167695317 - Tigger3b DNA MER2_type -2816 212 2 2310 284 256 35 chr3 50341841 50341875 -167695283 + L2 LINE L2 1656 1681 -1633 180 0 0 0 chr3 50341875 50341895 -167695263 + (CATGC)n Simple_repeat Simple_repeat 4 23 0 2310 284 256 35 chr3 50341895 50341913 -167695245 + L2 LINE L2 1681 1694 -1620 2479 153 49 7 chr3 50341913 50342345 -167694813 - L1PA16 LINE L1 -7 6159 5710 2310 284 256 35 chr3 50342345 50342574 -167694584 + L2 LINE L2 1694 2837 -477 220 207 73 61 chr3 50342754 50342836 -167694322 + L2 LINE L2 3186 3268 -4 232 269 126 60 chr3 50342860 50343042 -167694116 + L2 LINE L2 1727 1920 -1394 554 208 17 33 chr3 50343100 50343220 -167693938 + MER3 DNA MER1_type 1 118 -91 798 311 101 61 chr3 50343295 50344106 -167693052 + L2 LINE L2 2429 3267 -5 332 214 138 41 chr3 50344723 50344868 -167692290 + MER5A DNA MER1_type 31 189 0 1494 174 113 22 chr3 50345237 50345548 -167691610 + MER58B DNA MER1_type 2 340 -1 2089 94 10 36 chr3 50345624 50345933 -167691225 + AluSg1 SINE Alu 1 301 -8 189 300 146 18 chr3 50346035 50346145 -167691013 - L2 LINE L2 -3 3269 3146 241 304 181 23 chr3 50346578 50346749 -167690409 + MIR SINE MIR 20 217 -45 456 303 162 29 chr3 50347413 50347935 -167689223 + L2 LINE L2 2590 3192 -121 290 270 108 17 chr3 50347983 50348280 -167688878 - L1M4 LINE L1 -362 5812 5444 1253 148 0 87 chr3 50349156 50349385 -167687773 - AluJb SINE Alu -103 209 1 27 0 0 0 chr3 50350497 50350524 -167686634 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr3 50350601 50350625 -167686533 + AT_rich Low_complexity Low_complexity 1 24 0 232 179 0 18 chr3 50350903 50350959 -167686199 + C-rich Low_complexity Low_complexity 2 56 0 1229 198 78 4 chr3 50351725 50351868 -167685290 - MER7A DNA MER2_type -2763 275 144 1510 147 65 31 chr3 50351868 50352161 -167684997 - AluJo SINE Alu -9 303 1 1229 198 78 4 chr3 50352161 50352275 -167684883 - MER7A DNA MER2_type -2894 144 1 408 263 108 54 chr3 50352324 50352510 -167684648 - HAL1 LINE L1 -1236 1271 1076 720 134 8 34 chr3 50353498 50353617 -167683541 + AluSp/q SINE Alu 182 297 -16 24 0 0 0 chr3 50353851 50353875 -167683283 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr3 50354295 50354325 -167682833 + AT_rich Low_complexity Low_complexity 1 30 0 1835 146 11 7 chr3 50356747 50357027 -167680131 - MER1B DNA MER1_type -5 334 54 197 320 101 73 chr3 50357172 50357391 -167679767 - L2 LINE L2 -162 3110 2886 6138 143 44 13 chr3 50358543 50360506 -167676652 - L1PA15 LINE L1 0 6165 4143 279 0 0 0 chr3 50360690 50360721 -167676437 + (TG)n Simple_repeat Simple_repeat 2 32 0 310 326 97 45 chr3 50361277 50361608 -167675550 - L2 LINE L2 -27 3286 2939 1638 96 50 0 chr3 50361621 50361840 -167675318 + MER30 DNA MER1_type 1 230 0 2495 68 0 0 chr3 50361859 50362154 -167675004 + AluY SINE Alu 1 295 -16 213 333 83 25 chr3 50362187 50362307 -167674851 - L2 LINE L2 -421 2893 2767 198 209 142 82 chr3 50362764 50362898 -167674260 - L2 LINE L2 -962 2352 2211 190 277 265 0 chr3 50362960 50363043 -167674115 + MER5A DNA MER1_type 84 188 -1 759 232 194 23 chr3 50363545 50363855 -167673303 + L2 LINE L2 2951 3313 0 873 179 250 0 chr3 50368090 50368286 -167668872 + AluJo SINE Alu 64 308 -4 497 210 188 70 chr3 50368306 50368492 -167668666 + L2 LINE L2 2310 2517 -797 433 173 0 150 chr3 50368482 50368615 -167668543 + L2 LINE L2 3201 3313 0 * 26 0 0 0 chr3 50370730 50370756 -167666402 + AT_rich Low_complexity Low_complexity 1 26 0 225 0 0 0 chr3 50370800 50370825 -167666333 + (T)n Simple_repeat Simple_repeat 1 25 0 25 0 0 0 chr3 50371699 50371724 -167665434 + AT_rich Low_complexity Low_complexity 1 25 0 522 134 72 10 chr3 50372656 50372753 -167664405 + MER96B DNA MER1_type? 131 233 -184 284 279 101 77 chr3 50373921 50374129 -167663029 + L1MC4a LINE L1 5682 5894 -1914 291 279 156 34 chr3 50376177 50376356 -167660802 + MIR SINE MIR 1 201 -61 252 244 107 83 chr3 50376746 50376914 -167660244 - MIR3 SINE MIR -7 201 30 223 202 95 48 chr3 50381212 50381296 -167655862 - MIR SINE MIR -58 204 117 24 0 0 0 chr3 50382127 50382151 -167655007 + AT_rich Low_complexity Low_complexity 1 24 0 4098 224 69 54 chr3 50382980 50385536 -167651622 + L1MDb LINE L1 764 3249 -3157 2329 99 0 3 chr3 50385536 50385849 -167651309 + AluSx SINE Alu 1 312 0 4098 224 69 54 chr3 50385849 50385988 -167651170 + L1MDb LINE L1 3249 3385 -3021 279 0 0 0 chr3 50386066 50386097 -167651061 + (CA)n Simple_repeat Simple_repeat 2 32 0 1351 263 48 43 chr3 50386098 50386136 -167651022 + L1MC/D LINE L1 2227 2263 -3883 2327 94 0 3 chr3 50386136 50386434 -167650724 + AluSq SINE Alu 1 297 -16 1351 263 48 43 chr3 50386434 50386954 -167650204 + L1MC/D LINE L1 2263 2788 -3358 * 2472 219 61 60 chr3 50386930 50387131 -167650027 + L1MC/D LINE L1 4416 4615 -1531 283 103 0 0 chr3 50387131 50387170 -167649988 + U2 snRNA snRNA 1 39 -149 2472 219 61 60 chr3 50387170 50387796 -167649362 + L1MC/D LINE L1 4615 5282 -864 783 196 32 51 chr3 50387807 50387965 -167649193 - FRAM SINE Alu -24 152 1 2252 201 40 28 chr3 50387965 50388286 -167648872 + L1MC/D LINE L1 5272 5603 -741 1796 170 7 10 chr3 50388286 50388586 -167648572 + AluJb SINE Alu 1 299 -13 2252 201 40 28 chr3 50388586 50388761 -167648397 + L1MC/D LINE L1 5603 5774 -570 231 143 16 63 chr3 50389869 50389932 -167647226 + LTR66 LTR ERVL 380 439 -171 242 245 21 64 chr3 50389944 50390038 -167647120 - L1MC4 LINE L1 -1339 6703 6614 216 97 0 0 chr3 50390038 50390069 -167647089 + (TA)n Simple_repeat Simple_repeat 1 31 0 188 359 47 0 chr3 50390369 50390475 -167646683 - MIR SINE MIR -56 152 42 499 347 72 14 chr3 50392169 50392391 -167644767 - MIR SINE MIR -6 256 22 187 270 108 36 chr3 50392446 50392557 -167644601 + MIR3 SINE MIR 2 120 -88 4361 76 4 0 chr3 50397634 50398171 -167638987 - L1PA8A LINE L1 0 6131 5593 257 270 54 32 chr3 50398296 50398422 -167638736 - MIR3 SINE MIR -37 225 87 1325 138 14 14 chr3 50398598 50398808 -167638350 + MER20 DNA MER1_type 7 216 -3 2279 107 7 0 chr3 50399119 50399429 -167637729 + AluSx SINE Alu 1 312 0 474 239 127 7 chr3 50401207 50401349 -167635809 - MIR SINE MIR -2 260 102 1725 193 82 42 chr3 50401908 50402228 -167634930 - L1ME1 LINE L1 -5 6161 5816 2268 96 7 10 chr3 50402228 50402531 -167634627 - AluSq SINE Alu -11 302 1 1725 193 82 42 chr3 50402531 50402660 -167634498 - L1ME1 LINE L1 -350 5816 5694 5130 233 95 45 chr3 50402691 50402746 -167634412 - L1MEc LINE L1 -4592 1804 1753 2180 136 0 0 chr3 50402746 50403054 -167634104 - AluSx SINE Alu -4 308 1 5130 233 95 45 chr3 50403054 50404454 -167632704 - L1MEc LINE L1 -4643 1753 250 2600 163 38 20 chr3 50404454 50404901 -167632257 + MSTB2 LTR MaLR 3 457 0 5130 233 95 45 chr3 50404901 50405127 -167632031 - L1MEc LINE L1 -6146 250 37 236 225 126 40 chr3 50407473 50407624 -167629534 + L1M4 LINE L1 5182 5345 -801 4572 194 55 0 chr3 50407706 50408657 -167628501 + L1PB1 LINE L1 3241 4243 -1903 35738 87 41 12 chr3 50408670 50414648 -167622510 + L1PA6 LINE L1 11 6135 -19 6042 159 15 15 chr3 50414638 50414799 -167622359 + L1PB1 LINE L1 4237 4396 -1755 * 243 0 0 0 chr3 50414799 50414826 -167622332 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 6042 159 15 15 chr3 50414826 50416582 -167620576 + L1PB1 LINE L1 4396 6149 -2 309 329 70 0 chr3 50417053 50417196 -167619962 - MIR SINE MIR -55 207 55 264 269 161 63 chr3 50419058 50419281 -167617877 + MLT1L LTR MaLR 38 282 -333 687 57 0 0 chr3 50420639 50420727 -167616431 + (TATG)n Simple_repeat Simple_repeat 1 88 0 2117 111 4 0 chr3 50420727 50421006 -167616152 - AluSp SINE Alu -33 280 1 730 232 125 22 chr3 50421100 50421324 -167615834 - MIR SINE MIR -14 248 2 216 0 0 0 chr3 50421881 50421905 -167615253 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 343 238 0 12 chr3 50421980 50422060 -167615098 + LTR33A LTR ERVL 445 523 0 413 211 35 7 chr3 50422133 50422275 -167614883 + GA-rich Low_complexity Low_complexity 1 146 0 191 226 32 21 chr3 50422252 50422345 -167614813 + G-rich Low_complexity Low_complexity 5 98 0 * 355 208 10 10 chr3 50422389 50422490 -167614668 + GA-rich Low_complexity Low_complexity 4 104 0 402 235 48 31 chr3 50422490 50422736 -167614422 + L1ME3A LINE L1 5734 6125 -45 2354 69 7 10 chr3 50422736 50423040 -167614118 - AluY SINE Alu -8 303 1 402 235 48 31 chr3 50423040 50423082 -167614076 + L1ME3A LINE L1 6125 6165 -5 241 260 143 0 chr3 50423175 50423252 -167613906 - MIR SINE MIR -81 181 94 1699 117 16 8 chr3 50423323 50423571 -167613587 + AluSx SINE Alu 54 303 -9 2318 120 0 0 chr3 50423571 50423880 -167613278 + AluSg SINE Alu 1 309 -1 828 201 47 0 chr3 50423880 50424029 -167613129 + AluSc SINE Alu 132 287 -22 563 293 96 14 chr3 50424469 50424677 -167612481 + MIR SINE MIR 12 236 -26 1381 191 39 84 chr3 50425201 50425583 -167611575 + MLT1A1 LTR MaLR 1 365 0 369 241 24 11 chr3 50425792 50425900 -167611258 + L1MC1 LINE L1 4075 4185 -1961 * 3708 178 62 25 chr3 50425897 50427236 -167609922 + L1MC1 LINE L1 4457 5844 -489 1150 148 46 10 chr3 50427236 50427432 -167609726 + L1MC1 LINE L1 6131 6333 0 241 243 231 30 chr3 50427728 50427897 -167609261 - L2 LINE L2 -266 3047 2845 244 333 26 0 chr3 50427961 50428078 -167609080 + GA-rich Low_complexity Low_complexity 2 121 0 1855 211 40 15 chr3 50430083 50430485 -167606673 + MLT1H LTR MaLR 2 413 -136 496 225 14 42 chr3 50430612 50430754 -167606404 + MLT1H LTR MaLR 408 545 -4 722 323 88 13 chr3 50430923 50431310 -167605848 - L1ME LINE L1 -298 5823 5408 423 0 0 0 chr3 50431971 50432018 -167605140 + (TA)n Simple_repeat Simple_repeat 2 48 0 23 0 0 0 chr3 50434056 50434079 -167603079 + AT_rich Low_complexity Low_complexity 1 23 0 2233 102 0 10 chr3 50435120 50435423 -167601735 + AluSq SINE Alu 1 300 -13 500 253 156 77 chr3 50435649 50436053 -167601105 - LTR67 LTR ERVL -13 544 109 5542 73 32 62 chr3 50436323 50437217 -167599941 + SVA Other Other 1 868 -518 714 145 121 54 chr3 50437326 50437773 -167599385 + SVA Other Other 444 920 -466 6959 58 6 44 chr3 50437996 50438976 -167598182 + SVA Other Other 444 1386 0 1662 179 7 14 chr3 50439348 50439633 -167597525 + AluJo SINE Alu 1 283 -29 274 266 195 0 chr3 50439654 50439782 -167597376 + L1MEd LINE L1 514 666 -5864 280 311 138 39 chr3 50440056 50440460 -167596698 + L1MEd LINE L1 990 1457 -5073 1285 129 129 0 chr3 50440460 50440669 -167596489 + MER46A DNA MER2_type 1 236 0 280 311 138 39 chr3 50440669 50440779 -167596379 + L1MEd LINE L1 1457 1555 -4975 24 53 0 0 chr3 50440842 50440880 -167596278 + AT_rich Low_complexity Low_complexity 1 38 0 255 286 31 83 chr3 50441083 50441141 -167596017 + L1MEd LINE L1 1724 1783 -4938 905 245 0 0 chr3 50441141 50441304 -167595854 - FAM SINE Alu -12 163 1 255 286 31 83 chr3 50441304 50441437 -167595721 + L1MEd LINE L1 1783 1905 -4816 428 260 308 16 chr3 50441856 50442106 -167595052 - MER5C DNA MER1_type -1 323 1 535 243 52 25 chr3 50442283 50442495 -167594663 + L1MEd LINE L1 2471 2684 -3856 1909 156 0 0 chr3 50442521 50442804 -167594354 + AluJb SINE Alu 9 291 -21 24 0 0 0 chr3 50442804 50442828 -167594330 + AT_rich Low_complexity Low_complexity 1 24 0 186 133 0 0 chr3 50442828 50442858 -167594300 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 471 169 0 0 chr3 50442871 50442948 -167594210 + MLT2D LTR ERVL 1 77 -337 3250 83 0 29 chr3 50442988 50443371 -167593787 + MLT2A1 LTR ERVL 5 375 -69 2162 117 3 3 chr3 50443371 50443669 -167593489 - AluSc SINE Alu -11 298 1 3250 83 0 29 chr3 50443669 50443730 -167593428 + MLT2A1 LTR ERVL 375 436 -8 252 0 0 0 chr3 50443763 50443791 -167593367 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1403 195 14 18 chr3 50443800 50444077 -167593081 - AluJo SINE Alu -36 276 1 623 298 72 28 chr3 50444077 50444316 -167592842 + L1MEd LINE L1 3099 3326 -3214 1274 218 3 45 chr3 50444316 50444628 -167592530 + AluJo SINE Alu 1 299 -13 623 298 72 28 chr3 50444628 50444958 -167592200 + L1MEd LINE L1 3326 3693 -2847 654 202 10 87 chr3 50444998 50445206 -167591952 + MIR SINE MIR 71 262 0 461 259 26 49 chr3 50445252 50445518 -167591640 - L1M4 LINE L1 -2923 3223 2964 872 260 99 71 chr3 50445539 50446008 -167591150 + MLT1G1 LTR MaLR 10 545 -50 1731 136 35 21 chr3 50446008 50446295 -167590863 - L1PB4 LINE L1 -1 6155 5865 872 260 99 71 chr3 50446295 50446348 -167590810 + MLT1G1 LTR MaLR 545 595 0 201 39 0 0 chr3 50446612 50446638 -167590520 + (TG)n Simple_repeat Simple_repeat 2 27 0 1659 156 85 3 chr3 50446682 50447022 -167590136 - Charlie1 DNA MER1_type -1 2760 2393 945 144 75 17 chr3 50447039 50447212 -167589946 - Charlie1 DNA MER1_type -800 1961 1779 1612 203 20 0 chr3 50447214 50447515 -167589643 + L1M4b LINE L1 12 318 -6541 2912 167 24 21 chr3 50447517 50448093 -167589065 + L1MB8 LINE L1 5323 5900 -284 868 98 53 0 chr3 50448096 50448229 -167588929 + L1MB8 LINE L1 6034 6173 -5 1772 130 111 28 chr3 50448234 50448558 -167588600 + L1PA16 LINE L1 5813 6163 -3 462 281 29 36 chr3 50448566 50448705 -167588453 + L2 LINE L2 3176 3313 0 2855 13 0 0 chr3 50448867 50449178 -167587980 - AluYb8 SINE Alu -7 311 1 749 285 5 10 chr3 50451449 50451649 -167585509 - MIR SINE MIR -3 259 61 289 333 18 27 chr3 50451888 50451999 -167585159 + MIR SINE MIR 31 140 -68 2269 114 7 0 chr3 50452438 50452745 -167584413 + AluSx SINE Alu 1 309 -3 4039 129 50 31 chr3 50453274 50453823 -167583335 + MER50 LTR ERV1 1 538 -196 208 0 62 0 chr3 50453823 50453855 -167583303 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1817 145 0 0 chr3 50453859 50454135 -167583023 - AluSx SINE Alu -36 276 1 4039 129 50 31 chr3 50454135 50454278 -167582880 + MER50 LTR ERV1 540 711 -23 218 321 97 8 chr3 50454297 50454431 -167582727 - MER5A DNA MER1_type -1 188 43 * 319 319 65 0 chr3 50454320 50454458 -167582700 + MER5A DNA MER1_type 39 185 -4 2378 85 3 0 chr3 50454746 50455040 -167582118 - AluSp SINE Alu -18 295 1 450 0 0 0 chr3 50455195 50455245 -167581913 + (CA)n Simple_repeat Simple_repeat 2 51 0 224 217 57 9 chr3 50457419 50457439 -167579719 + (TA)n Simple_repeat Simple_repeat 2 20 -92 2164 113 0 10 chr3 50457439 50457740 -167579418 + AluSx SINE Alu 1 298 -14 224 217 57 9 chr3 50457740 50457825 -167579333 + (TA)n Simple_repeat Simple_repeat 20 112 0 258 136 0 0 chr3 50458236 50458280 -167578878 + (TA)n Simple_repeat Simple_repeat 1 44 0 856 302 153 24 chr3 50459836 50460518 -167576640 + L3 LINE CR1 711 1480 -97 944 211 126 24 chr3 50460732 50461026 -167576132 - L1ME1 LINE L1 -18 6148 5825 469 295 72 10 chr3 50461419 50461626 -167575532 - L1MC4a LINE L1 -329 5826 5648 186 260 0 20 chr3 50463647 50463697 -167573461 + L2 LINE L2 3223 3271 -1 1870 123 4 7 chr3 50464458 50464734 -167572424 - L1PA16 LINE L1 -9 6157 5883 234 284 101 74 chr3 50465574 50465722 -167571436 - MER5B DNA MER1_type -15 163 23 202 211 0 0 chr3 50465849 50465887 -167571271 + (CA)n Simple_repeat Simple_repeat 2 39 0 230 292 37 68 chr3 50468572 50468733 -167568425 + MIR3 SINE MIR 1 156 -52 273 343 114 0 chr3 50468858 50468963 -167568195 - MIR SINE MIR -62 146 30 227 385 0 0 chr3 50469320 50469403 -167567755 + (CA)n Simple_repeat Simple_repeat 2 84 0 256 167 74 19 chr3 50470477 50470531 -167566627 - MLT2B1 LTR ERVL 0 520 464 213 94 0 57 chr3 50470547 50470600 -167566558 + (TA)n Simple_repeat Simple_repeat 2 51 0 1662 187 9 28 chr3 50470602 50470928 -167566230 - MLT2B1 LTR ERVL -200 320 1 667 237 102 60 chr3 50471038 50471408 -167565750 + LTR16A1 LTR ERVL 75 474 -17 214 347 0 21 chr3 50472196 50472291 -167564867 + MIR SINE MIR 49 141 -67 985 207 45 0 chr3 50472337 50472535 -167564623 - MER3 DNA MER1_type -2 207 1 218 261 0 0 chr3 50472536 50472582 -167564576 + MIR3 SINE MIR 154 199 -9 10199 129 17 13 chr3 50474293 50475101 -167562057 + L1P LINE L1 3454 4258 -1888 2517 78 3 0 chr3 50475101 50475409 -167561749 - AluSx SINE Alu -3 309 1 10199 129 17 13 chr3 50475409 50476214 -167560944 + L1P LINE L1 4258 5073 -1073 5137 223 64 16 chr3 50476314 50477135 -167560023 + L1M4 LINE L1 3609 4522 -1624 2593 65 0 0 chr3 50477135 50477442 -167559716 + AluY SINE Alu 1 307 -4 5137 223 64 16 chr3 50477442 50477972 -167559186 + L1M4 LINE L1 4522 5025 -1121 1412 210 0 0 chr3 50477984 50478251 -167558907 + AluJb SINE Alu 23 289 -23 1646 195 51 23 chr3 50478264 50478655 -167558503 + L1M4 LINE L1 5028 5445 -739 2242 122 0 0 chr3 50478655 50478959 -167558199 + AluSx SINE Alu 1 304 -8 1646 195 51 23 chr3 50478959 50479199 -167557959 + L1M4 LINE L1 5445 5677 -507 21 0 0 0 chr3 50479344 50479365 -167557793 + AT_rich Low_complexity Low_complexity 1 21 0 2204 125 0 6 chr3 50479388 50479701 -167557457 + AluSx SINE Alu 1 311 -1 338 252 70 61 chr3 50479749 50479963 -167557195 + L1M4 LINE L1 4405 4620 -1526 475 286 14 0 chr3 50480637 50480777 -167556381 + L2 LINE L2 2182 2323 -991 331 286 67 0 chr3 50480848 50480953 -167556205 + L2 LINE L2 2828 2939 -375 304 321 75 19 chr3 50480966 50481125 -167556033 - L1MC4 LINE L1 0 8042 7875 401 275 63 34 chr3 50481125 50481409 -167555749 + L2 LINE L2 2924 3285 -28 241 128 0 0 chr3 50481412 50481451 -167555707 + MLT1J LTR MaLR 3 41 -470 932 154 50 91 chr3 50481460 50481680 -167555478 - MER34 LTR ERV1 0 542 332 1129 133 38 48 chr3 50481680 50481890 -167555268 + Tigger2 DNA MER2_type 1 208 -2510 990 132 13 44 chr3 50481887 50482046 -167555112 + Tigger2 DNA MER2_type 2564 2717 -1 * 1500 169 125 7 chr3 50482049 50482345 -167554813 - MER34 LTR ERV1 -211 331 1 580 277 6 34 chr3 50482346 50482523 -167554635 + MLT1J LTR MaLR 90 261 -250 587 282 48 19 chr3 50483786 50483995 -167553163 - Charlie8 DNA MER1_type -2201 216 2 490 309 52 34 chr3 50484477 50484768 -167552390 - L2 LINE L2 -214 3099 2804 212 266 31 31 chr3 50485128 50485192 -167551966 - L3 LINE CR1 -1327 250 187 2286 71 14 0 chr3 50485942 50486250 -167550908 - AluSp SINE Alu 0 312 1 316 148 161 12 chr3 50486256 50486337 -167550821 - MER53 DNA DNA -96 93 1 846 252 92 26 chr3 50486662 50486850 -167550308 - L1M4 LINE L1 -947 5199 5025 2170 142 45 31 chr3 50486850 50487209 -167549949 + THE1B LTR MaLR 1 364 0 846 252 92 26 chr3 50487209 50487312 -167549846 - L1M4 LINE L1 -1121 5025 4930 2152 130 3 3 chr3 50487312 50487619 -167549539 + AluSx SINE Alu 1 307 -5 846 252 92 26 chr3 50487619 50487675 -167549483 - L1M4 LINE L1 -1216 4930 4828 1570 233 74 43 chr3 50487679 50488311 -167548847 - L1M4 LINE L1 -1447 4699 4048 2046 110 116 25 chr3 50488361 50488441 -167548717 - MER4B LTR ERV1 -224 386 315 2314 98 0 16 chr3 50488441 50488756 -167548402 + AluSx SINE Alu 2 311 -1 2046 110 116 25 chr3 50488756 50489029 -167548129 - MER4B LTR ERV1 -295 315 1 355 174 198 0 chr3 50489030 50489116 -167548042 - L1M4 LINE L1 -2159 3987 3885 811 173 77 0 chr3 50489125 50489281 -167547877 + MLT1C LTR MaLR 1 168 -299 376 270 10 0 chr3 50489389 50489489 -167547669 - L1M4 LINE L1 -2473 3673 3573 * 1166 206 76 0 chr3 50489488 50489750 -167547408 - L1MB7 LINE L1 0 6184 5903 209 300 145 26 chr3 50489990 50490217 -167546941 - L2 LINE L2 -337 2977 2724 229 357 28 78 chr3 50491501 50491823 -167545335 + L2 LINE L2 2810 3115 -157 2253 106 10 3 chr3 50491970 50492272 -167544886 + AluSq SINE Alu 6 309 -4 330 258 86 25 chr3 50492423 50492586 -167544572 - MIR SINE MIR -12 250 78 757 209 123 14 chr3 50495921 50496132 -167541026 + MER106A DNA MER1_type 3 236 0 1567 189 18 11 chr3 50497427 50497707 -167539451 + AluJo SINE Alu 1 282 -30 189 0 0 0 chr3 50497712 50497733 -167539425 + (TAA)n Simple_repeat Simple_repeat 2 22 0 477 0 0 0 chr3 50497739 50497792 -167539366 + (CTA)n Simple_repeat Simple_repeat 1 53 0 509 241 147 77 chr3 50497855 50498232 -167538926 - MLT1J2 LTR MaLR 0 450 44 302 311 121 23 chr3 50501202 50501334 -167535824 - MIR SINE MIR -72 190 46 336 296 9 26 chr3 50501596 50501711 -167535447 + L2 LINE L2 3151 3263 -9 906 257 31 35 chr3 50501888 50502149 -167535009 - MIR SINE MIR -1 261 2 2004 282 119 52 chr3 50502279 50503796 -167533362 - L2 LINE L2 -19 3294 1683 1621 132 4 0 chr3 50503796 50504061 -167533097 + L1PA11 LINE L1 4972 5237 -909 6817 90 15 6 chr3 50504162 50505109 -167532049 + L1PA11 LINE L1 5218 6174 0 869 227 91 13 chr3 50505124 50505432 -167531726 - L2 LINE L2 -1619 1695 1364 358 276 184 32 chr3 50506655 50506872 -167530286 + MIR SINE MIR 1 250 -12 237 290 10 30 chr3 50507914 50508014 -167529144 - MIR SINE MIR -14 248 151 1905 156 0 22 chr3 50508082 50508396 -167528762 - AluJb SINE Alu -5 307 1 451 266 175 7 chr3 50509042 50509196 -167527962 - MER5A DNA MER1_type 0 189 10 653 263 78 25 chr3 50509660 50509903 -167527255 - MIR SINE MIR 0 262 7 234 0 0 0 chr3 50510707 50510733 -167526425 + (CA)n Simple_repeat Simple_repeat 2 27 0 208 336 28 0 chr3 50510735 50510878 -167526280 + (TA)n Simple_repeat Simple_repeat 1 147 0 204 231 0 0 chr3 50512011 50512063 -167525095 + (TA)n Simple_repeat Simple_repeat 2 53 0 2241 91 0 7 chr3 50512210 50512507 -167524651 - AluY SINE Alu -16 295 1 2544 143 50 46 chr3 50512518 50513016 -167524142 - L1MB7 LINE L1 0 6184 5685 1572 184 24 14 chr3 50513374 50513668 -167523490 + AluJb SINE Alu 1 297 -15 2156 107 3 7 chr3 50513669 50513969 -167523189 + AluSx SINE Alu 1 299 -13 28674 111 11 24 chr3 50514515 50520572 -167516586 + L1PA5 LINE L1 8 6146 -323 9908 32 0 0 chr3 50520572 50522546 -167514612 + L1PA3 LINE L1 4180 6155 0 28674 111 11 24 chr3 50522546 50522928 -167514230 + L1PA5 LINE L1 6146 6532 63 346 79 32 0 chr3 50522928 50522991 -167514167 + (TAAAA)n Simple_repeat Simple_repeat 1 65 0 2909 71 11 0 chr3 50522991 50523372 -167513786 + L1PA7 LINE L1 5770 6154 0 28674 111 11 24 chr3 50523372 50523393 -167513765 + L1PA5 LINE L1 6448 6468 -1 1831 271 107 37 chr3 50524718 50525538 -167511620 + L2 LINE L2 26 903 -2411 1801 267 121 24 chr3 50525542 50526491 -167510667 + L2 LINE L2 2268 3310 -3 28 79 0 0 chr3 50527100 50527163 -167509995 + AT_rich Low_complexity Low_complexity 1 63 0 2334 115 0 0 chr3 50527244 50527557 -167509601 - AluSq SINE Alu 0 313 1 577 285 106 24 chr3 50528177 50528574 -167508584 + L1MC4 LINE L1 7260 7588 -373 564 135 45 0 chr3 50528595 50528684 -167508474 + AluJb SINE Alu 26 118 -194 324 80 0 20 chr3 50528687 50528737 -167508421 - 5S rRNA rRNA -71 50 2 2227 110 0 0 chr3 50528752 50529043 -167508115 - AluSx SINE Alu -21 291 1 921 192 18 0 chr3 50529060 50529227 -167507931 + AluJb SINE Alu 130 299 -13 229 216 0 0 chr3 50529657 50529708 -167507450 + FLAM_A SINE Alu 83 133 0 307 234 136 32 chr3 50529762 50529916 -167507242 + MER112 DNA MER1_type 89 258 -2 377 359 17 0 chr3 50529943 50530060 -167507098 - MIR3 SINE MIR -85 123 5 338 323 31 39 chr3 50530197 50530324 -167506834 + L2 LINE L2 3188 3313 0 1375 154 0 30 chr3 50531261 50531527 -167505631 - L1MA5A LINE L1 -10 6287 6030 22590 35 6 0 chr3 50531533 50535081 -167502077 - L1PA4 LINE L1 -2 6153 2590 1039 99 0 47 chr3 50535081 50535273 -167501885 - L1MA5A LINE L1 -271 6026 5844 225 310 112 83 chr3 50537597 50537910 -167499248 + L2 LINE L2 2951 3272 0 557 258 27 62 chr3 50538022 50538247 -167498911 + MIR SINE MIR 20 236 -26 1751 169 64 0 chr3 50538537 50538863 -167498295 - MER47A DNA MER2_type -19 347 1 516 268 49 19 chr3 50539228 50539433 -167497725 + L1MC4 LINE L1 6777 6987 -1055 2556 155 18 0 chr3 50539519 50539970 -167497188 + L1MB3 LINE L1 5725 6183 0 813 263 62 23 chr3 50540229 50540537 -167496621 + MER46C DNA MER2_type 17 336 -2 397 245 14 7 chr3 50540569 50540712 -167496446 + MER113 DNA MER1_type? 1 144 -377 659 242 81 9 chr3 50540732 50540955 -167496203 + MER113 DNA MER1_type? 277 515 -6 313 186 97 44 chr3 50541429 50541542 -167495616 + L1MC4 LINE L1 7077 7195 -847 1649 227 131 5 chr3 50541562 50542156 -167495002 + L1MC4 LINE L1 7360 8028 -14 2033 133 0 26 chr3 50542541 50542850 -167494308 - AluJo SINE Alu -11 301 1 1232 131 99 0 chr3 50542963 50543215 -167493943 - L1MA6 LINE L1 0 6300 6024 1603 192 77 6 chr3 50543221 50543725 -167493433 - L1M4 LINE L1 -561 5617 5051 1417 177 9 102 chr3 50543725 50544059 -167493099 - AluJo SINE Alu -5 307 5 1603 192 77 6 chr3 50544059 50544189 -167492969 - L1M4 LINE L1 -1127 5051 4932 * 3923 193 94 31 chr3 50544186 50545575 -167491583 - L1MD2 LINE L1 -8 6745 5270 5260 228 48 67 chr3 50546250 50546285 -167490873 - L1MD2 LINE L1 -1794 4746 4712 417 92 0 0 chr3 50546285 50546350 -167490808 - L1MA10 LINE L1 -14 6320 6256 5260 228 48 67 chr3 50546350 50547043 -167490115 - L1MD2 LINE L1 -1828 4712 4008 2212 92 4 4 chr3 50547043 50547324 -167489834 + AluSp SINE Alu 17 297 -16 5260 228 48 67 chr3 50547324 50548789 -167488369 - L1MD2 LINE L1 -2532 4008 2591 1772 182 7 76 chr3 50548789 50549212 -167487946 + MSTD LTR MaLR 1 394 -2 5260 228 48 67 chr3 50549212 50549233 -167487925 - L1MD2 LINE L1 -3949 2591 2571 5376 162 19 14 chr3 50549242 50550818 -167486340 - L1PA16 LINE L1 -9 6157 4560 675 156 24 36 chr3 50550820 50550987 -167486171 - L1MD2 LINE L1 -3959 2581 2417 719 269 52 25 chr3 50551041 50551327 -167485831 + L1ME4a LINE L1 57 350 -6046 853 246 8 13 chr3 50551387 50551478 -167485680 + L1ME4a LINE L1 3493 3583 -2632 180 0 0 0 chr3 50551478 50551498 -167485660 + (CAA)n Simple_repeat Simple_repeat 2 21 0 853 246 8 13 chr3 50551498 50551642 -167485516 + L1ME4a LINE L1 3583 3727 -2488 1169 158 0 16 chr3 50551748 50551961 -167485197 + AluSg/x SINE Alu 102 311 0 405 297 141 54 chr3 50552248 50552689 -167484469 - L1 LINE L1 -2139 4007 3529 567 266 86 51 chr3 50553431 50553915 -167483243 + L1ME4a LINE L1 5488 5973 -217 22895 165 27 17 chr3 50554391 50560730 -167476428 + L1PA10 LINE L1 3 6479 -4 1982 123 0 0 chr3 50561881 50562158 -167475000 + AluSc SINE Alu 1 277 -32 387 0 0 0 chr3 50562169 50562212 -167474946 + (TAA)n Simple_repeat Simple_repeat 2 44 0 414 272 87 46 chr3 50562264 50562437 -167474721 - MIR SINE MIR -20 242 63 2159 69 0 7 chr3 50562591 50562868 -167474290 - AluY SINE Alu 0 311 37 537 293 68 69 chr3 50563927 50564484 -167472674 + L1MC4a LINE L1 5264 5821 -1987 1481 133 99 64 chr3 50564484 50564542 -167472616 + MER46B DNA MER2_type 1 56 -2675 2372 58 0 10 chr3 50564542 50564835 -167472323 - AluY SINE Alu -21 290 1 1481 133 99 64 chr3 50564835 50565121 -167472037 + MER46B DNA MER2_type 56 232 -4 537 293 68 69 chr3 50565121 50565212 -167471946 + L1MC4a LINE L1 5821 5911 -1897 23 0 0 0 chr3 50565576 50565599 -167471559 + AT_rich Low_complexity Low_complexity 1 23 0 2081 130 0 3 chr3 50566478 50566762 -167470396 + AluSx SINE Alu 1 283 -29 243 0 0 0 chr3 50566765 50566792 -167470366 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 2268 118 14 11 chr3 50566799 50567163 -167469995 + MER47A DNA MER2_type 1 365 -1 200 299 39 13 chr3 50567289 50567366 -167469792 - MIR3 SINE MIR -8 200 122 22 70 0 0 chr3 50568890 50568933 -167468225 + AT_rich Low_complexity Low_complexity 1 43 0 240 281 34 11 chr3 50569125 50569214 -167467944 - L2 LINE L2 0 3313 3223 1193 147 35 85 chr3 50569398 50569656 -167467502 + AluJo SINE Alu 57 301 -11 238 245 32 11 chr3 50569679 50569773 -167467385 + L1P LINE L1 3589 3684 -2462 189 107 0 0 chr3 50569785 50569813 -167467345 + (A)n Simple_repeat Simple_repeat 1 28 0 6796 221 72 44 chr3 50570408 50572920 -167464238 - L1M4 LINE L1 -1366 4780 2198 373 232 29 58 chr3 50573107 50573245 -167463913 - L1ME4a LINE L1 -4 6117 5984 614 237 13 0 chr3 50573265 50573417 -167463741 - Tigger6a DNA MER2_type -1 1082 929 808 199 28 0 chr3 50573422 50573563 -167463595 - FRAM SINE Alu -30 146 2 4449 190 24 15 chr3 50573565 50574492 -167462666 - Tigger6a DNA MER2_type -147 936 2 32 43 0 0 chr3 50574538 50574584 -167462574 + AT_rich Low_complexity Low_complexity 1 46 0 436 301 55 21 chr3 50574634 50574963 -167462195 - L1ME4a LINE L1 -244 5877 5538 333 301 68 34 chr3 50574977 50575153 -167462005 - L1ME4a LINE L1 -717 5445 5287 279 0 0 0 chr3 50575168 50575199 -167461959 + (TC)n Simple_repeat Simple_repeat 2 32 0 938 121 0 30 chr3 50575504 50575636 -167461522 + AluSg SINE Alu 1 128 -182 10762 31 0 2 chr3 50575636 50577725 -167459433 + L1PA4 LINE L1 4097 6183 0 1495 79 16 0 chr3 50577727 50577916 -167459242 + AluSg SINE Alu 117 308 -4 315 356 4 104 chr3 50578922 50579192 -167457966 - L2 LINE L2 -75 3197 2955 432 330 49 57 chr3 50579317 50579684 -167457474 - L2 LINE L2 -571 2743 2380 1928 112 0 103 chr3 50579684 50580024 -167457134 - AluSg1 SINE Alu -4 305 1 699 98 0 0 chr3 50580042 50580134 -167457024 - FLAM_C SINE Alu -16 127 36 308 286 31 0 chr3 50580134 50580232 -167456926 - L2 LINE L2 -927 2387 2287 31 44 0 0 chr3 50580569 50580614 -167456544 + AT_rich Low_complexity Low_complexity 1 45 0 24 32 0 0 chr3 50580835 50580866 -167456292 + AT_rich Low_complexity Low_complexity 1 31 0 321 295 114 47 chr3 50581334 50581527 -167455631 - L3b LINE CR1 -8 1575 1370 224 342 50 17 chr3 50582334 50582454 -167454704 - MIR3 SINE MIR -84 124 1 425 179 0 0 chr3 50582573 50582651 -167454507 - MER116 DNA Mariner -2 78 1 1760 173 0 29 chr3 50583971 50584284 -167452874 - AluJo SINE Alu -8 304 1 621 211 131 96 chr3 50584305 50584504 -167452654 - MIR SINE MIR -11 251 46 3031 36 0 0 chr3 50584638 50584997 -167452161 + L1PA5 LINE L1 5796 6154 0 1005 133 0 0 chr3 50585065 50585200 -167451958 + AluSq/x SINE Alu 1 135 -178 6622 79 16 2 chr3 50585300 50586410 -167450748 - L1P2 LINE L1 -638 5516 4397 207 158 0 0 chr3 50586526 50586564 -167450594 - MIR SINE MIR -112 150 113 4506 158 45 4 chr3 50586761 50587697 -167449461 - L1 LINE L1 -1019 5127 4154 216 0 0 0 chr3 50588315 50588339 -167448819 + (A)n Simple_repeat Simple_repeat 1 24 0 308 263 0 10 chr3 50588429 50588528 -167448630 - L1MEc LINE L1 -4848 1548 1451 9716 208 32 70 chr3 50588789 50593479 -167443679 + L1M2 LINE L1 2 4513 -2335 207 0 0 0 chr3 50593590 50593613 -167443545 + (A)n Simple_repeat Simple_repeat 1 23 0 960 158 16 0 chr3 50593791 50593974 -167443184 + L1PB4 LINE L1 15 200 -6663 12160 166 56 11 chr3 50593976 50596854 -167440304 + L1PB4 LINE L1 636 3839 -3023 2467 66 0 7 chr3 50596854 50597159 -167439999 + AluY SINE Alu 1 303 -8 12160 166 56 11 chr3 50597159 50599329 -167437829 + L1PB4 LINE L1 3839 5911 -951 2028 113 11 0 chr3 50599330 50599604 -167437554 + AluSc SINE Alu 1 277 -32 2379 100 6 0 chr3 50599613 50599943 -167437215 + L1PB1 LINE L1 5817 6148 -3 1781 185 67 0 chr3 50600479 50600886 -167436272 + L1PB4 LINE L1 6431 6996 -23 467 220 0 20 chr3 50600947 50601047 -167436111 + AluS SINE Alu 1 98 -215 1878 118 4 32 chr3 50601192 50601471 -167435687 - AluSx SINE Alu -12 300 30 2043 135 0 0 chr3 50602417 50602713 -167434445 - AluSx SINE Alu -16 296 1 215 330 52 21 chr3 50602753 50602850 -167434308 - MIR SINE MIR -78 130 31 21 0 0 0 chr3 50603136 50603157 -167434001 + AT_rich Low_complexity Low_complexity 1 21 0 813 319 115 6 chr3 50604381 50604738 -167432420 - L2 LINE L2 -700 2614 2219 362 138 0 0 chr3 50604959 50605017 -167432141 + AluS SINE Alu 2 59 -244 2021 138 0 0 chr3 50605266 50605557 -167431601 - AluSg SINE Alu -19 291 1 2099 115 0 48 chr3 50605557 50605870 -167431288 - AluSx SINE Alu -14 298 1 263 360 45 9 chr3 50606965 50607076 -167430082 + L2 LINE L2 3122 3236 -36 21 0 0 0 chr3 50607293 50607314 -167429844 + AT_rich Low_complexity Low_complexity 1 21 0 382 269 62 56 chr3 50607314 50607474 -167429684 - MIR SINE MIR -64 198 38 317 303 161 12 chr3 50609861 50610023 -167427135 - MER5A DNA MER1_type -1 188 3 265 187 134 22 chr3 50611834 50611968 -167425190 - L1MC5 LINE L1 -185 7776 7628 290 221 64 58 chr3 50611974 50612146 -167425012 - L1MC5 LINE L1 -366 7595 7423 344 210 37 0 chr3 50612152 50612233 -167424925 - L1MC5 LINE L1 -583 7378 7295 311 202 34 11 chr3 50612353 50612442 -167424716 - L1MC5 LINE L1 -899 7062 6972 630 269 214 6 chr3 50612543 50612870 -167424288 - L1MC4a LINE L1 -854 6954 6560 2287 224 89 52 chr3 50612914 50613749 -167423409 + L1ME2 LINE L1 4888 5770 -394 2043 132 7 3 chr3 50613749 50614045 -167423113 + AluSx SINE Alu 1 297 -15 2287 224 89 52 chr3 50614045 50614453 -167422705 + L1ME2 LINE L1 5770 6162 -2 181 216 0 0 chr3 50614550 50614587 -167422571 - L2 LINE L2 -19 3253 3217 3422 291 24 36 chr3 50615005 50616270 -167420888 + L1M3b LINE L1 17 1266 -5015 576 192 169 27 chr3 50616284 50616411 -167420747 + L1M3b LINE L1 1431 1539 -4742 213 39 0 0 chr3 50616411 50616437 -167420721 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 576 192 169 27 chr3 50616437 50616528 -167420630 + L1M3b LINE L1 1539 1680 -4601 198 0 0 0 chr3 50616528 50616550 -167420608 + (A)n Simple_repeat Simple_repeat 1 22 0 444 278 8 27 chr3 50617035 50617212 -167419946 + L1M3b LINE L1 3227 3399 -2951 2379 89 6 19 chr3 50617212 50617527 -167419631 - AluY SINE Alu 0 311 1 444 278 8 27 chr3 50617527 50617608 -167419550 + L1M3b LINE L1 3399 3480 -2870 * 704 209 23 6 chr3 50617602 50617774 -167419384 + L1MB7 LINE L1 5789 5963 -221 556 275 75 32 chr3 50618509 50618949 -167418209 - L1M4 LINE L1 -2678 3468 3010 333 259 143 9 chr3 50618951 50619063 -167418095 - MER5B DNA MER1_type -3 175 49 2965 200 67 48 chr3 50619622 50619846 -167417312 + L1ME1 LINE L1 5366 5584 -582 2404 68 0 16 chr3 50619846 50620156 -167417002 + AluY SINE Alu 1 305 -6 4292 147 12 54 chr3 50620160 50621017 -167416141 - L1MA7 LINE L1 -3 6288 5468 2965 200 67 48 chr3 50621017 50621566 -167415592 + L1ME1 LINE L1 5586 6159 -7 563 277 183 10 chr3 50622748 50623048 -167414110 + L2 LINE L2 2962 3313 0 286 284 78 28 chr3 50623603 50623744 -167413414 - MIR SINE MIR -108 154 7 772 216 91 21 chr3 50623776 50624017 -167413141 - L1ME3A LINE L1 -5 6165 5908 1267 235 49 53 chr3 50624153 50624685 -167412473 - L1M4 LINE L1 -1708 4438 3909 360 0 0 0 chr3 50625408 50625448 -167411710 + (TA)n Simple_repeat Simple_repeat 2 41 0 558 259 75 24 chr3 50625659 50625953 -167411205 + Charlie7 DNA MER1_type 294 602 -2010 517 341 64 18 chr3 50626180 50626400 -167410758 + L3 LINE CR1 1302 1531 -46 180 317 49 37 chr3 50626402 50626484 -167410674 + MER5B DNA MER1_type 1 83 -95 992 279 94 49 chr3 50626613 50627058 -167410100 + L2 LINE L2 2828 3292 -21 888 212 12 6 chr3 50627099 50627264 -167409894 + MER58B DNA MER1_type 176 341 0 723 240 79 41 chr3 50627322 50627769 -167409389 + MLT1H LTR MaLR 1 549 0 22 0 0 0 chr3 50627770 50627792 -167409366 + AT_rich Low_complexity Low_complexity 1 22 0 724 270 56 14 chr3 50627994 50628209 -167408949 + MER58A DNA MER1_type 1 224 0 2438 57 3 0 chr3 50628275 50628571 -167408587 - AluY SINE Alu -14 297 1 524 224 81 6 chr3 50629131 50629305 -167407853 - HsTC2 DNA Tc2 0 1900 1714 488 260 102 30 chr3 50629443 50629678 -167407480 - HsTC2 DNA Tc2 -178 1720 1293 1013 266 80 80 chr3 50630344 50630822 -167406336 + L2 LINE L2 19 496 -2818 698 282 5 16 chr3 50630823 50630865 -167406293 - MER58A DNA MER1_type -2197 223 182 14851 134 28 56 chr3 50630865 50633660 -167403498 - Tigger2 DNA MER2_type 0 2718 1 698 282 5 16 chr3 50633660 50633805 -167403353 - MER58A DNA MER1_type -2238 182 38 219 313 100 53 chr3 50633821 50633971 -167403187 + L2 LINE L2 533 689 -2625 340 259 157 41 chr3 50633999 50634146 -167403012 - MER69A DNA AcHobo -10 167 4 697 266 65 54 chr3 50634525 50635293 -167401865 + L1MEc LINE L1 673 1441 -4955 1800 229 86 44 chr3 50635300 50635403 -167401755 + L1MEc LINE L1 2453 2550 -3665 959 199 25 0 chr3 50635403 50635564 -167401594 + FAM SINE Alu 1 165 -10 1800 229 86 44 chr3 50635564 50636226 -167400932 + L1MEc LINE L1 2550 3250 -2965 2448 70 0 0 chr3 50636443 50636744 -167400414 + AluSc SINE Alu 1 301 -8 248 265 108 29 chr3 50636804 50636906 -167400252 - MLT1J2 LTR MaLR -7 542 433 1393 156 55 21 chr3 50637359 50637648 -167399510 - L1MB7 LINE L1 -17 6167 5869 1798 157 0 27 chr3 50637712 50638011 -167399147 + AluSx SINE Alu 1 291 -21 980 84 0 0 chr3 50638510 50638641 -167398517 - L1PA14 LINE L1 -1 6160 6030 696 264 22 52 chr3 50639892 50640161 -167396997 + MIR SINE MIR 1 261 -1 225 303 73 37 chr3 50640383 50640492 -167396666 + MIR SINE MIR 123 235 -27 274 273 98 21 chr3 50641757 50641900 -167395258 + HAL1b LINE L1 242 395 -953 2105 105 7 7 chr3 50642533 50642848 -167394310 - AluSc SINE Alu 0 315 1 3538 168 48 6 chr3 50643222 50643937 -167393221 - L1MB8 LINE L1 -6 6172 5428 646 124 41 8 chr3 50643974 50644095 -167393063 - L1MB3 LINE L1 -2 6181 6057 223 311 0 56 chr3 50644198 50644288 -167392870 - L2 LINE L2 -1 3312 3228 2246 110 10 3 chr3 50644297 50644605 -167392553 + AluSx SINE Alu 1 310 -2 2091 122 0 46 chr3 50645065 50645392 -167391766 + AluSx SINE Alu 1 312 0 182 262 311 8 chr3 50645639 50645761 -167391397 + MIR SINE MIR 48 206 -56 431 276 151 20 chr3 50646268 50646467 -167390691 - MLT1J2 LTR MaLR -11 439 215 4552 171 17 16 chr3 50646507 50647472 -167389686 + L1MB4 LINE L1 5214 6180 0 385 352 69 36 chr3 50648101 50648521 -167388637 + L3 LINE CR1 1144 1577 0 284 293 38 23 chr3 50649542 50649579 -167387579 - MIR3 SINE MIR -8 200 165 457 96 96 0 chr3 50649579 50649652 -167387506 + MADE1 DNA Mariner 1 80 0 284 293 38 23 chr3 50649652 50649747 -167387411 - MIR3 SINE MIR -43 165 66 21 0 0 0 chr3 50649864 50649885 -167387273 + AT_rich Low_complexity Low_complexity 1 21 0 1510 189 24 54 chr3 50649889 50650259 -167386899 - MLT1A1 LTR MaLR -6 359 1 1495 145 15 36 chr3 50650262 50650533 -167386625 - L1MC/D LINE L1 -743 5403 5273 3410 81 34 10 chr3 50650533 50651030 -167386128 - L1MA1 LINE L1 -4 6298 5790 1495 145 15 36 chr3 50651030 50651115 -167386043 - L1MC/D LINE L1 -873 5273 5188 671 269 134 10 chr3 50651116 50651414 -167385744 - Charlie7 DNA MER1_type -356 2256 1922 835 250 89 33 chr3 50651430 50651675 -167385483 - L1ME3 LINE L1 -2 6160 5893 1878 141 40 43 chr3 50651675 50652050 -167385108 + THE1C LTR MaLR 1 374 -1 835 250 89 33 chr3 50652050 50652108 -167385050 - L1ME3 LINE L1 -269 5893 5840 12503 198 60 28 chr3 50652230 50654421 -167382737 + L1MA7 LINE L1 2606 4726 -2984 2169 124 13 0 chr3 50654421 50654727 -167382431 + AluSx SINE Alu 1 310 -2 12503 198 60 28 chr3 50654727 50655514 -167381644 + L1MA7 LINE L1 4726 5486 -2224 2223 125 0 0 chr3 50655514 50655825 -167381333 + AluSx SINE Alu 1 311 -1 12503 198 60 28 chr3 50655825 50657757 -167379401 + L1MA7 LINE L1 5486 7704 -6 24 0 0 0 chr3 50657757 50657781 -167379377 + AT_rich Low_complexity Low_complexity 1 24 0 674 181 6 16 chr3 50658025 50658207 -167378951 + GA-rich Low_complexity Low_complexity 1 180 0 25 0 0 0 chr3 50658868 50658893 -167378265 + AT_rich Low_complexity Low_complexity 1 25 0 2472 80 0 0 chr3 50662063 50662365 -167374793 + AluY SINE Alu 3 304 -7 2133 144 40 80 chr3 50662528 50662798 -167374360 + Tigger2a DNA MER2_type 1 247 -2461 2715 105 11 0 chr3 50662798 50663169 -167373989 - THE1C LTR MaLR 0 375 1 2133 144 40 80 chr3 50663169 50663349 -167373809 + Tigger2a DNA MER2_type 247 433 -1 3131 144 52 17 chr3 50663482 50663681 -167373477 + MER41C LTR ERV1 1 191 -363 2850 7 0 0 chr3 50663681 50663991 -167373167 + AluYa5 SINE Alu 1 310 -1 3131 144 52 17 chr3 50663991 50664326 -167372832 + MER41C LTR ERV1 191 554 0 2255 128 26 28 chr3 50665000 50665428 -167371730 - L1MA3 LINE L1 0 6305 5879 1117 253 27 3 chr3 50665428 50665729 -167371429 - HAL1 LINE L1 -160 2347 2040 1482 156 145 61 chr3 50665767 50666159 -167370999 + MLT1D LTR MaLR 1 425 -80 409 284 97 45 chr3 50666502 50666576 -167370582 + MIR3 SINE MIR 16 85 -123 2620 55 0 0 chr3 50666576 50666887 -167370271 - AluY SINE Alu 0 311 1 409 284 97 45 chr3 50666887 50666988 -167370170 + MIR3 SINE MIR 85 200 -8 471 247 201 7 chr3 50667156 50667310 -167369848 - MIR SINE MIR 0 262 79 234 253 108 0 chr3 50668141 50668224 -167368934 + L2 LINE L2 1991 2082 -1232 268 236 56 14 chr3 50668355 50668427 -167368731 + L2 LINE L2 3237 3311 -2 1867 204 23 21 chr3 50668512 50668969 -167368189 - MER89 LTR ERV1 0 559 4 256 196 125 45 chr3 50668973 50669085 -167368073 + L1M4 LINE L1 4045 4165 -1981 726 319 89 57 chr3 50669176 50669897 -167367261 + L1M4 LINE L1 4319 5060 -1086 319 220 51 8 chr3 50670030 50670148 -167367010 + L1M4 LINE L1 5277 5399 -747 180 248 110 117 chr3 50670341 50670486 -167366672 - MIR SINE MIR -10 252 109 188 272 109 33 chr3 50672975 50673067 -167364091 + L2 LINE L2 3169 3267 -5 339 283 19 33 chr3 50673167 50673379 -167363779 + L1M4 LINE L1 4378 4586 -1560 24 32 0 0 chr3 50673816 50673847 -167363311 + AT_rich Low_complexity Low_complexity 1 31 0 5616 42 0 0 chr3 50673868 50674539 -167362619 - L1PA3 LINE L1 -2 6153 5483 26883 40 1 1 chr3 50674539 50678061 -167359097 + L1PA3 LINE L1 1964 5483 -743 560 286 88 41 chr3 50678379 50679524 -167357634 + L1MC4a LINE L1 18 1186 -5029 6676 91 8 9 chr3 50679742 50680750 -167356408 - L1P LINE L1 -1804 4342 3336 465 241 79 10 chr3 50681473 50681676 -167355482 - L1ME LINE L1 -2631 4013 3797 * 4024 232 58 35 chr3 50681670 50683040 -167354118 - L1M4 LINE L1 -5122 1420 19 957 290 81 31 chr3 50683172 50684171 -167352987 - L1ME LINE L1 -4498 2186 1014 503 359 44 44 chr3 50684482 50684780 -167352378 - L1ME LINE L1 -5964 861 564 278 283 0 10 chr3 50684785 50684884 -167352274 - L1MEc LINE L1 -4848 1548 1451 312 300 36 21 chr3 50685001 50685141 -167352017 + L1MC4a LINE L1 2747 2888 -3327 3006 194 67 34 chr3 50685172 50685929 -167351229 + L1M2b LINE L1 12 793 -6416 1657 137 51 6 chr3 50686045 50686541 -167350617 + L1MA4A LINE L1 5068 5577 -726 2629 115 16 18 chr3 50686560 50687004 -167350154 - L1MA3 LINE L1 -11 6294 5852 3853 130 24 41 chr3 50687006 50687708 -167349450 + L1MA4A LINE L1 5608 6297 -6 365 296 71 84 chr3 50687934 50688114 -167349044 + L1MC4a LINE L1 3150 3331 -2884 5688 94 19 29 chr3 50688114 50689046 -167348112 + L1PA13 LINE L1 5222 6144 -19 365 296 71 84 chr3 50689046 50689353 -167347805 + L1MC4a LINE L1 3331 3630 -2585 2169 107 7 7 chr3 50689353 50689652 -167347506 - AluSc SINE Alu -10 299 1 365 296 71 84 chr3 50689652 50689768 -167347390 + L1MC4a LINE L1 3630 3746 -2469 357 275 53 36 chr3 50689787 50690093 -167347065 + L1MC4a LINE L1 3750 4060 -2155 21 36 0 0 chr3 50690257 50690285 -167346873 + AT_rich Low_complexity Low_complexity 1 28 0 1634 196 3 14 chr3 50690345 50690658 -167346500 + AluJo SINE Alu 1 310 0 227 287 7 28 chr3 50690715 50690858 -167346300 + L1MC4a LINE L1 4467 4606 -1609 * 988 270 41 6 chr3 50690856 50691171 -167345987 + L1MC4a LINE L1 5584 5909 -1968 2165 132 3 0 chr3 50691288 50691598 -167345560 + AluSx SINE Alu 1 311 -1 32467 81 5 6 chr3 50691742 50697302 -167339856 - L1PA4 LINE L1 -1 6154 606 2177 131 0 0 chr3 50697312 50697624 -167339534 - AluSq SINE Alu -1 312 1 2289 158 32 41 chr3 50697637 50698100 -167339058 + Tigger3(Golem) DNA MER2_type 2570 3028 -1 1607 197 88 15 chr3 50698227 50698623 -167338535 + MSTC LTR MaLR 4 428 0 225 289 11 0 chr3 50698635 50698725 -167338433 - HAL1 LINE L1 -171 2336 2246 22 70 0 0 chr3 50699699 50699742 -167337416 + AT_rich Low_complexity Low_complexity 1 43 0 332 232 0 37 chr3 50699759 50699841 -167337317 + MER96 DNA MER1_type? 6 84 -91 525 272 92 48 chr3 50700055 50700305 -167336853 - L2 LINE L2 -32 3281 3021 2297 75 3 57 chr3 50700309 50700627 -167336531 - AluSc SINE Alu -7 302 2 1133 176 39 4 chr3 50700688 50700943 -167336215 - L1MD3 LINE L1 -2 7993 7730 705 293 56 30 chr3 50700965 50701235 -167335923 - L2 LINE L2 -33 3280 3004 230 273 26 0 chr3 50701255 50701332 -167335826 - L1 LINE L1 -2371 3775 3697 3944 179 54 49 chr3 50701495 50702354 -167334804 - MER21B LTR ERV1 0 863 1 368 274 157 39 chr3 50702691 50702921 -167334237 + MLT1I LTR MaLR 31 287 -122 503 286 122 9 chr3 50704853 50705066 -167332092 - MIR SINE MIR -16 246 10 2259 73 0 21 chr3 50705361 50705648 -167331510 + AluY SINE Alu 18 298 -13 1349 119 21 0 chr3 50706850 50707072 -167330086 + AluSp SINE Alu 85 310 0 2412 83 0 16 chr3 50707397 50707711 -167329447 - AluY SINE Alu -2 309 1 197 305 95 11 chr3 50709239 50709334 -167327824 + L2 LINE L2 3143 3245 -27 193 322 0 17 chr3 50710136 50710195 -167326963 - MIR3 SINE MIR -13 195 138 2123 95 64 17 chr3 50710200 50710546 -167326612 - L1MA2 LINE L1 0 6304 5943 235 114 0 0 chr3 50710701 50710736 -167326422 - U2 snRNA snRNA -153 35 1 2637 23 3 0 chr3 50712347 50712649 -167324509 - AluY SINE Alu -8 303 1 29 0 0 0 chr3 50713225 50713254 -167323904 + AT_rich Low_complexity Low_complexity 1 29 0 195 231 0 39 chr3 50713668 50713720 -167323438 + MIR3 SINE MIR 153 202 -6 2136 132 41 39 chr3 50714869 50715232 -167321926 + THE1B LTR MaLR 1 364 0 1551 198 24 7 chr3 50717156 50717444 -167319714 - AluJb SINE Alu -19 293 1 4040 198 29 14 chr3 50717715 50719522 -167317636 + L1MB2 LINE L1 4340 6163 -8 486 216 254 4 chr3 50719533 50719765 -167317393 + L1MC5 LINE L1 7354 7643 -318 1754 228 61 42 chr3 50719765 50720288 -167316870 - MLT1E2 LTR MaLR -24 602 70 189 0 0 0 chr3 50721016 50721037 -167316121 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 180 263 230 33 chr3 50721271 50721423 -167315735 - MIR3 SINE MIR -2 206 25 446 292 93 69 chr3 50721894 50722838 -167314320 + L1MEc LINE L1 36 1002 -5394 197 305 95 11 chr3 50724534 50724629 -167312529 + L2 LINE L2 3143 3245 -27 193 322 0 17 chr3 50725431 50725490 -167311668 - MIR3 SINE MIR -13 195 138 2242 138 26 12 chr3 50725494 50725915 -167311243 - L1MA3 LINE L1 0 6305 5879 1036 253 27 3 chr3 50725915 50726216 -167310942 - HAL1 LINE L1 -160 2347 2040 1352 161 143 59 chr3 50726254 50726646 -167310512 + MLT1D LTR MaLR 1 425 -80 418 284 97 45 chr3 50726989 50727063 -167310095 + MIR3 SINE MIR 16 85 -123 2634 55 0 0 chr3 50727063 50727374 -167309784 - AluY SINE Alu 0 311 1 418 284 97 45 chr3 50727374 50727475 -167309683 + MIR3 SINE MIR 85 200 -8 474 247 201 7 chr3 50727643 50727797 -167309361 - MIR SINE MIR 0 262 79 234 253 108 0 chr3 50728628 50728711 -167308447 + L2 LINE L2 1991 2082 -1232 268 236 56 14 chr3 50728842 50728914 -167308244 + L2 LINE L2 3237 3311 -2 858 225 36 14 chr3 50728999 50729221 -167307937 - MER89 LTR ERV1 0 559 333 613 256 162 40 chr3 50729474 50730055 -167307103 + Charlie7 DNA MER1_type 508 1159 -1453 942 164 16 0 chr3 50730063 50730246 -167306912 + L1PBa LINE L1 15 200 -6663 11591 139 90 6 chr3 50730248 50733119 -167304039 + L1PBa LINE L1 636 3749 -3113 2399 81 0 7 chr3 50733123 50733433 -167303725 + AluY SINE Alu 1 308 -3 31 58 0 0 chr3 50734096 50734148 -167303010 + AT_rich Low_complexity Low_complexity 1 52 0 248 235 0 44 chr3 50734515 50734583 -167302575 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 583 103 21 0 chr3 50734584 50734681 -167302477 + (TAGA)n Simple_repeat Simple_repeat 2 100 0 24 39 0 0 chr3 50736017 50736043 -167301115 + AT_rich Low_complexity Low_complexity 1 26 0 2287 81 3 3 chr3 50736050 50736348 -167300810 + AluY SINE Alu 1 298 -13 710 270 56 14 chr3 50736414 50736629 -167300529 - MER58A DNA MER1_type 0 224 1 22 0 0 0 chr3 50736831 50736853 -167300305 + AT_rich Low_complexity Low_complexity 1 22 0 279 295 67 0 chr3 50736854 50736959 -167300199 - MLT1H1 LTR MaLR 0 549 438 650 252 71 12 chr3 50737026 50737301 -167299857 - MLT1H1 LTR MaLR -215 334 1 737 235 25 0 chr3 50737359 50737521 -167299637 - MER58B DNA MER1_type 0 341 176 539 293 83 74 chr3 50737576 50738009 -167299149 - L2 LINE L2 -36 3277 2841 443 313 79 74 chr3 50738363 50738556 -167298602 + L1MC4a LINE L1 4141 4332 -1814 1646 192 3 18 chr3 50738556 50738870 -167298288 + AluJo SINE Alu 1 310 0 443 313 79 74 chr3 50738870 50739068 -167298090 + L1MC4a LINE L1 4332 4535 -1611 1005 264 41 6 chr3 50739068 50739383 -167297775 + L1MC4a LINE L1 5515 5840 -1968 2188 124 3 0 chr3 50739500 50739806 -167297352 + AluSx SINE Alu 1 307 -5 4897 33 2 13 chr3 50739955 50740560 -167296598 - L1PA4 LINE L1 -3 6152 5555 13637 212 29 46 chr3 50740709 50746118 -167291040 + L1PB4 LINE L1 1133 6438 -770 341 324 102 0 chr3 50746374 50746550 -167290608 + MIR SINE MIR 49 242 -20 2074 164 3 0 chr3 50746567 50746878 -167290280 + AluJb SINE Alu 1 312 0 5588 43 0 0 chr3 50746922 50747593 -167289565 - L1PA3 LINE L1 -2 6153 5483 774 171 38 19 chr3 50747593 50747803 -167289355 + L1P LINE L1 1964 2177 -3969 6277 200 21 16 chr3 50748085 50749610 -167287548 - L1 LINE L1 -867 5279 3748 12060 73 4 1 chr3 50749732 50751432 -167285726 - L1P LINE L1 -3741 2405 701 281 259 74 25 chr3 50751438 50751600 -167285558 - L1MA2 LINE L1 -39 6265 6096 1715 119 8 4 chr3 50751829 50752081 -167285077 + AluSx SINE Alu 28 280 -32 2245 122 6 0 chr3 50752092 50752420 -167284738 + L1PB1 LINE L1 5819 6148 -3 1766 187 67 0 chr3 50752956 50753363 -167283795 + L1PB4 LINE L1 6777 7342 -23 5612 72 9 1 chr3 50753518 50754279 -167282879 + L1PA4 LINE L1 5389 6155 0 1023 171 78 15 chr3 50754283 50754435 -167282723 - Tigger3(Golem) DNA MER2_type -462 2566 2425 1287 194 14 38 chr3 50754435 50754635 -167282523 - AluJb SINE Alu 0 312 126 218 32 32 0 chr3 50754635 50754666 -167282492 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1287 194 14 38 chr3 50754666 50754790 -167282368 - AluJb SINE Alu -186 126 1 1023 171 78 15 chr3 50754790 50754906 -167282252 - Tigger3(Golem) DNA MER2_type -603 2425 2281 592 222 0 0 chr3 50754903 50755011 -167282147 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 1477 85 22 0 chr3 50755046 50755269 -167281889 - L1P LINE L1 -898 5248 5021 1019 209 119 17 chr3 50755392 50755694 -167281464 - MSTC LTR MaLR -92 336 4 2343 149 31 48 chr3 50755821 50756297 -167280861 - Tigger3(Golem) DNA MER2_type -1 3028 2561 2341 106 0 0 chr3 50756297 50756608 -167280550 + AluSq SINE Alu 1 311 -2 406 155 0 0 chr3 50756615 50756686 -167280472 + L1P LINE L1 606 676 -5470 2491 180 27 4 chr3 50756869 50757390 -167279768 - L1MA7 LINE L1 -291 6000 5468 2058 213 75 7 chr3 50757395 50757941 -167279217 + L1ME1 LINE L1 5579 6161 -5 219 155 28 14 chr3 50758830 50758901 -167278257 + G-rich Low_complexity Low_complexity 5 76 0 201 240 31 42 chr3 50758903 50758999 -167278159 + (CGGGG)n Simple_repeat Simple_repeat 4 98 0 455 236 81 6 chr3 50759336 50759510 -167277648 - HsTC2 DNA Tc2 -3 1895 1709 422 260 102 30 chr3 50759648 50759883 -167277275 - HsTC2 DNA Tc2 -178 1720 1293 2313 81 0 16 chr3 50760542 50760852 -167276306 - AluY SINE Alu -6 305 1 973 180 69 5 chr3 50760860 50761077 -167276081 - L1ME LINE L1 -565 5599 5369 1422 102 106 0 chr3 50762034 50762280 -167274878 - L1MA5A LINE L1 -5 6292 6021 708 217 42 101 chr3 50762782 50763068 -167274090 - MLT1B LTR MaLR 0 390 122 1133 288 124 30 chr3 50764711 50765177 -167271981 + L2 LINE L2 1051 1560 -1754 18633 101 13 10 chr3 50765987 50769726 -167267432 + L1PA8 LINE L1 2405 6152 -20 664 217 0 32 chr3 50769848 50770005 -167267153 - MER58A DNA MER1_type -44 180 29 294 158 0 18 chr3 50770410 50770467 -167266691 + L1M3 LINE L1 5696 5751 -583 437 237 23 23 chr3 50770709 50770840 -167266318 - Tigger6a DNA MER2_type -1 1082 952 1764 198 36 38 chr3 50770856 50771327 -167265831 + L1PBa LINE L1 6 475 -6388 1068 106 19 0 chr3 50771327 50771488 -167265670 + L1PB1 LINE L1 5988 6151 0 4092 157 67 52 chr3 50771511 50772458 -167264700 - Tigger6a DNA MER2_type -118 965 5 324 289 23 69 chr3 50772487 50772660 -167264498 + L1ME4a LINE L1 5954 6118 -3 1508 169 10 49 chr3 50772666 50772973 -167264185 + AluJb SINE Alu 1 295 -17 1609 180 18 21 chr3 50773172 50773481 -167263677 + AluJo SINE Alu 1 308 0 647 305 59 31 chr3 50773481 50773838 -167263320 - L2 LINE L2 -422 2892 2526 308 266 112 7 chr3 50774046 50774189 -167262969 - LTR33 LTR ERVL -25 496 339 241 316 50 14 chr3 50774188 50774327 -167262831 - LTR33 LTR ERVL -333 188 45 * 1945 304 160 34 chr3 50774378 50775751 -167261407 - L2 LINE L2 -1102 2212 667 547 239 39 0 chr3 50775793 50775923 -167261235 - MER20 DNA MER1_type -1 218 84 1344 205 44 33 chr3 50777724 50778085 -167259073 - MLT1D LTR MaLR -13 492 128 516 120 0 103 chr3 50778283 50778400 -167258758 - MLT1D LTR MaLR -519 107 3 2362 113 0 0 chr3 50778472 50778781 -167258377 - AluSx SINE Alu -2 310 2 288 297 76 27 chr3 50779124 50779309 -167257849 - L2 LINE L2 0 3313 3120 200 308 92 36 chr3 50779517 50779712 -167257446 + L2 LINE L2 3006 3211 -61 22 0 0 0 chr3 50780128 50780150 -167257008 + AT_rich Low_complexity Low_complexity 1 22 0 1765 241 34 51 chr3 50780265 50780829 -167256329 + L1MC3 LINE L1 7039 7592 -193 1665 198 10 10 chr3 50780829 50781122 -167256036 + AluJo SINE Alu 1 293 -19 824 164 39 7 chr3 50781122 50781381 -167255777 + GA-rich Low_complexity Low_complexity 1 267 0 539 228 34 0 chr3 50781403 50781552 -167255606 + L1MD3 LINE L1 7842 7995 0 1264 225 49 33 chr3 50781642 50782466 -167254692 + L1MDa LINE L1 2254 3086 -3454 588 224 26 0 chr3 50782573 50782725 -167254433 + L1MD2 LINE L1 6194 6349 -10 415 307 80 47 chr3 50782947 50783249 -167253909 - L2 LINE L2 -241 3072 2743 2642 243 49 19 chr3 50784073 50785216 -167251942 + L1MEc LINE L1 2128 3269 -2946 * 3042 151 50 7 chr3 50785215 50786064 -167251094 - L1MA5 LINE L1 -460 5840 4957 230 304 77 11 chr3 50786502 50786683 -167250475 + L1ME LINE L1 5625 5817 -304 580 250 116 19 chr3 50788358 50788574 -167248584 - MIR SINE MIR 0 262 26 255 234 112 9 chr3 50788631 50788738 -167248420 - L1ME LINE L1 -246 5875 5758 341 324 102 0 chr3 50788820 50788996 -167248162 + MIR SINE MIR 49 242 -20 2051 167 3 0 chr3 50789013 50789324 -167247834 + AluJb SINE Alu 1 312 0 42317 41 0 2 chr3 50789366 50795528 -167241630 - L1PA3 LINE L1 0 6155 2 198 263 0 38 chr3 50795779 50795859 -167241299 + L2 LINE L2 829 905 -2409 224 279 0 0 chr3 50795927 50795988 -167241170 + L2 LINE L2 1587 1647 -1667 1914 153 20 0 chr3 50796029 50796323 -167240835 + AluJb SINE Alu 1 300 -12 515 253 67 40 chr3 50796335 50796404 -167240754 - MER58A DNA MER1_type -185 156 90 7704 174 127 11 chr3 50796404 50797976 -167239182 + MER52A LTR ERV1 1 1755 0 515 253 67 40 chr3 50797976 50798056 -167239102 - MER58A DNA MER1_type -251 90 3 865 261 84 21 chr3 50798060 50798393 -167238765 + L2 LINE L2 1647 2000 -1314 405 269 60 68 chr3 50798451 50798700 -167238458 + L2 LINE L2 2992 3238 -75 189 0 0 0 chr3 50798732 50798753 -167238405 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 363 332 25 69 chr3 50800019 50800165 -167236993 + MIR3 SINE MIR 12 148 -60 2828 185 33 7 chr3 50800165 50800706 -167236452 + MER74A LTR ERVL 1 555 -3 363 332 25 69 chr3 50800706 50800761 -167236397 + MIR3 SINE MIR 148 204 -4 666 229 90 20 chr3 50800801 50801002 -167236156 - MER58C DNA MER1_type 0 215 1 949 119 0 0 chr3 50802209 50802335 -167234823 + AluJ SINE Alu 5 130 -182 2896 45 3 0 chr3 50802357 50802715 -167234443 + L1PA4 LINE L1 5793 6151 -4 711 241 0 0 chr3 50802731 50802868 -167234290 + AluJ SINE Alu 129 265 -47 357 241 0 13 chr3 50803471 50803550 -167233608 - MIR SINE MIR -107 155 78 2020 116 4 7 chr3 50804738 50805015 -167232143 + AluSg1 SINE Alu 22 297 -12 367 256 132 0 chr3 50805143 50805264 -167231894 + L1MC4a LINE L1 2693 2829 -3317 538 291 75 37 chr3 50805331 50805426 -167231732 + L1MC4a LINE L1 5514 5604 -2204 799 198 35 6 chr3 50805426 50805598 -167231560 - MER5B DNA MER1_type 0 178 2 538 291 75 37 chr3 50805598 50805904 -167231254 + L1MC4a LINE L1 5604 5930 -1878 279 0 0 0 chr3 50805908 50805939 -167231219 + (CA)n Simple_repeat Simple_repeat 2 32 0 29 28 0 0 chr3 50806037 50806073 -167231085 + AT_rich Low_complexity Low_complexity 1 36 0 546 229 13 26 chr3 50806123 50806276 -167230882 + L1ME1 LINE L1 6009 6159 -7 237 254 0 16 chr3 50806315 50806378 -167230780 + L1ME LINE L1 5521 5582 -588 276 294 46 0 chr3 50806440 50806549 -167230609 + L1ME LINE L1 5686 5799 -365 872 291 93 23 chr3 50806603 50807128 -167230030 + L1MC4a LINE L1 5321 5882 -1926 5663 79 29 5 chr3 50807251 50808047 -167229111 + L1PA8 LINE L1 5354 6168 -4 851 211 0 58 chr3 50808079 50808287 -167228871 - MER58A DNA MER1_type 0 224 29 2526 153 93 13 chr3 50808692 50809242 -167227916 + L1MA7 LINE L1 5696 6289 -2 773 183 15 6 chr3 50810011 50810194 -167226964 - L1MA7 LINE L1 -313 5853 5669 28 0 0 0 chr3 50811540 50811568 -167225590 + AT_rich Low_complexity Low_complexity 1 28 0 2393 64 10 7 chr3 50811804 50812100 -167225058 - AluY SINE Alu -14 297 1 191 256 80 102 chr3 50813152 50813328 -167223830 - L2 LINE L2 -423 2891 2720 394 204 45 11 chr3 50813401 50813489 -167223669 + MER5C DNA MER1_type 1 91 -233 2093 195 114 21 chr3 50813565 50814145 -167223013 + L1MC4a LINE L1 7168 7801 -7 364 238 74 25 chr3 50814155 50814277 -167222881 + MLT1G LTR MaLR 9 136 -454 1608 251 71 26 chr3 50814339 50814939 -167222219 - MLT1G LTR MaLR 0 590 1 1441 152 0 61 chr3 50814982 50815245 -167221913 + AluJb SINE Alu 1 247 -65 181 283 17 17 chr3 50815306 50815366 -167221792 - L2 LINE L2 -668 2646 2587 2570 189 35 46 chr3 50815366 50815995 -167221163 - MLT1E3 LTR MaLR 0 624 3 265 329 27 0 chr3 50817729 50817802 -167219356 - L2 LINE L2 -1 3312 3238 448 320 68 34 chr3 50817925 50818159 -167218999 - MIR SINE MIR 0 262 21 362 336 104 65 chr3 50818252 50818467 -167218691 - L2 LINE L2 -341 2973 2768 1492 236 21 3 chr3 50818467 50818798 -167218360 + MER58B DNA MER1_type 4 340 -1 362 336 104 65 chr3 50818798 50819109 -167218049 - L2 LINE L2 -546 2768 2426 303 235 191 43 chr3 50819159 50819290 -167217868 - MIR SINE MIR -12 250 89 4724 166 8 10 chr3 50819290 50820085 -167217073 + MER54B LTR ERVL 1 793 0 303 235 191 43 chr3 50820085 50820115 -167217043 - MIR SINE MIR -173 89 65 5214 135 53 11 chr3 50821245 50822361 -167214797 - L1MA8 LINE L1 -23 6268 5107 394 327 159 5 chr3 50822367 50822587 -167214571 - L1ME LINE L1 -558 5563 5310 2218 108 0 14 chr3 50823721 50824017 -167213141 + AluSx SINE Alu 1 292 -20 829 182 12 24 chr3 50825695 50825860 -167211298 + FRAM SINE Alu 1 163 -3 2182 128 0 3 chr3 50825877 50826189 -167210969 + AluSx SINE Alu 1 311 -1 258 264 16 32 chr3 50826206 50826331 -167210827 + HAL1b LINE L1 402 524 -824 28 61 0 0 chr3 50826550 50826599 -167210559 + AT_rich Low_complexity Low_complexity 1 49 0 193 276 26 26 chr3 50828082 50828158 -167209000 + L2 LINE L2 2796 2871 -443 826 194 93 12 chr3 50828181 50828456 -167208702 - MER2 DNA MER2_type 0 345 14 1090 153 27 5 chr3 50829450 50829672 -167207486 - HsTC2 DNA Tc2 -13 1885 1659 448 192 69 54 chr3 50829669 50829799 -167207359 - HsTC2 DNA Tc2 -1764 134 3 * 277 309 52 37 chr3 50829846 50829982 -167207176 + L3b LINE CR1 1127 1264 -319 182 351 130 24 chr3 50830312 50830520 -167206638 + L3b LINE CR1 1345 1574 -9 237 197 0 79 chr3 50831065 50831141 -167206017 + 7SK RNA RNA 2 71 -122 230 326 11 11 chr3 50831748 50831840 -167205318 - MIR SINE MIR -68 140 49 10207 135 24 26 chr3 50832596 50835306 -167201852 + L1P3 LINE L1 10 2734 -3727 182 239 0 30 chr3 50835436 50835503 -167201655 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 583 103 21 0 chr3 50835504 50835601 -167201557 + (TAGA)n Simple_repeat Simple_repeat 2 100 0 26 0 0 0 chr3 50836935 50836961 -167200197 + AT_rich Low_complexity Low_complexity 1 26 0 2403 84 0 0 chr3 50836968 50837266 -167199892 + AluSx SINE Alu 1 298 -14 668 245 27 5 chr3 50837762 50837946 -167199212 + HAL1 LINE L1 1562 1749 -758 448 255 58 85 chr3 50838063 50838251 -167198907 + MIR SINE MIR 72 254 -8 1648 218 56 68 chr3 50838256 50838825 -167198333 - MER68 LTR ERV1 0 562 1 1025 317 155 38 chr3 50839314 50840428 -167196730 + L2 LINE L2 1959 3200 -72 314 338 45 26 chr3 50840547 50840701 -167196457 + L2 LINE L2 3116 3272 0 545 302 155 10 chr3 50841061 50841462 -167195696 + L1MC4a LINE L1 5383 5841 -1967 252 0 0 0 chr3 50841672 50841700 -167195458 + (T)n Simple_repeat Simple_repeat 1 28 0 2259 98 0 19 chr3 50841809 50842127 -167195031 - AluSp SINE Alu -1 312 1 1003 290 88 26 chr3 50842129 50842712 -167194446 - L1MC4a LINE L1 -1869 5939 5321 276 294 46 0 chr3 50842766 50842875 -167194283 - L1ME LINE L1 -365 5799 5686 234 231 19 0 chr3 50842948 50843000 -167194158 - L1ME LINE L1 -2239 5569 5517 689 189 13 13 chr3 50843038 50843191 -167193967 - L1ME1 LINE L1 -5 6161 6009 32 26 0 0 chr3 50843244 50843283 -167193875 + AT_rich Low_complexity Low_complexity 1 39 0 230 211 144 0 chr3 50843458 50843548 -167193610 + L1MC4 LINE L1 6948 7050 -992 2541 154 29 43 chr3 50843548 50843592 -167193566 + MLT1D LTR MaLR 1 44 -461 7715 63 31 2 chr3 50843592 50844277 -167192881 + LTR13 LTR ERVK 1 724 -283 204 40 0 0 chr3 50844277 50844302 -167192856 + (TC)n Simple_repeat Simple_repeat 2 26 0 7715 63 31 2 chr3 50844302 50844595 -167192563 + LTR13 LTR ERVK 724 1007 0 2541 154 29 43 chr3 50844595 50845062 -167192096 + MLT1D LTR MaLR 44 505 0 602 191 0 0 chr3 50845131 50845236 -167191922 + Tigger3(Golem) DNA MER2_type 1 105 -2924 * 1272 128 55 31 chr3 50845233 50845522 -167191636 + Tigger3(Golem) DNA MER2_type 2274 2569 -460 875 178 0 63 chr3 50845532 50845706 -167191452 - AluJo SINE Alu -149 163 1 2511 128 66 2 chr3 50845707 50846145 -167191013 + Tigger3(Golem) DNA MER2_type 2564 3029 0 490 163 0 61 chr3 50846151 50846209 -167190949 + MER46A DNA MER2_type 1 52 -184 707 201 0 8 chr3 50846209 50846343 -167190815 - FLAM_A SINE Alu 0 133 1 490 163 0 61 chr3 50846343 50846382 -167190776 + MER46A DNA MER2_type 52 92 -144 1022 251 127 11 chr3 50846549 50846896 -167190262 - L1ME1 LINE L1 -289 5881 5495 334 305 111 61 chr3 50848193 50848537 -167188621 + L1MEd LINE L1 568 928 -5191 415 319 106 46 chr3 50848564 50849763 -167187395 + L1MEd LINE L1 911 2187 -3942 1955 139 52 0 chr3 50849796 50850083 -167187075 - AluSx SINE Alu -10 302 1 1568 266 73 16 chr3 50850104 50850479 -167186679 + L1MEd LINE L1 2201 2553 -3576 2323 102 3 6 chr3 50850479 50850792 -167186366 - AluSx SINE Alu 0 312 1 1568 266 73 16 chr3 50850792 50851316 -167185842 + L1MEd LINE L1 2553 3152 -2977 378 0 0 0 chr3 50851473 50851515 -167185643 + (CA)n Simple_repeat Simple_repeat 1 42 0 1126 165 23 23 chr3 50852189 50852407 -167184751 + MER20 DNA MER1_type 1 218 -1 1751 183 65 6 chr3 50852739 50853172 -167183986 + MER89 LTR ERV1 1 558 -1 7592 25 8 0 chr3 50853365 50854346 -167182812 + L1PA3 LINE L1 5165 6152 -3 32 26 0 0 chr3 50854346 50854385 -167182773 + AT_rich Low_complexity Low_complexity 1 39 0 3836 136 50 6 chr3 50854779 50855472 -167181686 + MER50 LTR ERV1 1 724 -10 2556 55 3 0 chr3 50855842 50856151 -167181007 - AluY SINE Alu -1 310 1 207 132 40 53 chr3 50856387 50856463 -167180695 + (TA)n Simple_repeat Simple_repeat 1 75 0 1992 254 101 60 chr3 50857075 50858160 -167178998 + L1MC4a LINE L1 5488 6617 -1191 1286 195 77 25 chr3 50858458 50858781 -167178377 + MER2 DNA MER2_type 2 341 -3 844 254 49 44 chr3 50858794 50858824 -167178334 + L1MC4 LINE L1 6652 6680 -1362 1622 183 57 26 chr3 50858824 50859174 -167177984 - MLT1A1 LTR MaLR 0 365 5 844 254 49 44 chr3 50859174 50859532 -167177626 + L1MC4 LINE L1 6680 7042 -1000 2358 199 17 14 chr3 50859654 50860136 -167177022 - MER77 LTR ERV1 -122 483 1 187 259 74 83 chr3 50860313 50860421 -167176737 + MER5A DNA MER1_type 81 187 -2 1670 183 3 35 chr3 50860545 50860856 -167176302 + AluJo SINE Alu 1 301 -11 1758 158 84 6 chr3 50862014 50862336 -167174822 + MER7A DNA MER2_type 1 345 -1 238 214 214 14 chr3 50862677 50862817 -167174341 + L1ME LINE L1 5267 5434 -728 1471 153 31 71 chr3 50862947 50863241 -167173917 - AluJo SINE Alu -30 282 1 317 303 37 16 chr3 50863241 50863429 -167173729 + L1ME LINE L1 5602 5793 -328 441 189 0 0 chr3 50864228 50864318 -167172840 + (TA)n Simple_repeat Simple_repeat 1 90 0 5513 143 40 18 chr3 50864784 50866522 -167170636 + L1MA4A LINE L1 4506 6289 -14 1881 168 0 10 chr3 50866527 50866824 -167170334 - AluJb SINE Alu -18 294 1 24 0 0 0 chr3 50866829 50866853 -167170305 + AT_rich Low_complexity Low_complexity 1 24 0 252 86 0 0 chr3 50867358 50867393 -167169765 + (TA)n Simple_repeat Simple_repeat 2 36 0 651 234 170 13 chr3 50867478 50867713 -167169445 + L2 LINE L2 3042 3313 0 1337 224 100 38 chr3 50868373 50868552 -167168606 + MLT1E2 LTR MaLR 178 344 -282 653 211 90 121 chr3 50868552 50868644 -167168514 + MLT1C LTR MaLR 5 98 -369 2370 91 0 0 chr3 50868644 50868941 -167168217 + AluSc SINE Alu 1 297 -12 653 211 90 121 chr3 50868941 50868992 -167168166 + MLT1C LTR MaLR 98 149 -318 2238 131 0 0 chr3 50868992 50869304 -167167854 + AluSx SINE Alu 1 312 0 653 211 90 121 chr3 50869304 50869637 -167167521 + MLT1C LTR MaLR 149 467 0 1337 224 100 38 chr3 50869637 50869876 -167167282 + MLT1E2 LTR MaLR 344 622 -4 220 394 21 21 chr3 50870317 50870411 -167166747 + L2 LINE L2 3157 3250 -22 1785 157 20 10 chr3 50870742 50871041 -167166117 - AluJb SINE Alu -9 303 2 2422 87 0 0 chr3 50871166 50871464 -167165694 - AluY SINE Alu -13 298 1 1189 241 116 34 chr3 50871580 50872011 -167165147 + MLT2B2 LTR ERVL 1 474 -41 441 0 0 0 chr3 50872011 50872060 -167165098 + (CA)n Simple_repeat Simple_repeat 2 50 0 1189 241 116 34 chr3 50872060 50872093 -167165065 + MLT2B2 LTR ERVL 474 503 -12 441 252 73 69 chr3 50872276 50872522 -167164636 + MLT1K LTR MaLR 342 588 0 218 221 124 80 chr3 50872897 50873010 -167164148 - MIR SINE MIR -11 251 134 491 271 44 6 chr3 50873075 50873237 -167163921 - MIR SINE MIR -10 252 84 707 226 0 0 chr3 50873713 50873846 -167163312 - FLAM_A SINE Alu 0 133 1 1596 120 27 4 chr3 50876858 50877116 -167160042 + LTR35 LTR ERV1 1 264 -354 497 119 60 12 chr3 50877115 50877199 -167159959 + LTR35 LTR ERV1 531 618 0 * 559 266 35 25 chr3 50877221 50877420 -167159738 + LTR35-int LTR ERV1 417 617 -5329 212 216 0 39 chr3 50877441 50877492 -167159666 + CT-rich Low_complexity Low_complexity 3 51 0 1114 186 13 83 chr3 50877856 50878157 -167159001 + LTR35-int LTR ERV1 1478 1757 -5780 992 188 56 16 chr3 50878159 50878483 -167158675 + LTR35-int LTR ERV1 355 1491 -4455 * 2433 148 22 73 chr3 50878480 50879033 -167158125 + LTR35-int LTR ERV1 768 1967 -2913 257 204 0 0 chr3 50879049 50879098 -167158060 + LTR35-int LTR ERV1 4689 4737 -61 3485 135 56 3 chr3 50879156 50879743 -167157415 + LTR35 LTR ERV1 1 618 0 233 158 35 0 chr3 50879828 50879885 -167157273 + (TATATG)n Simple_repeat Simple_repeat 1 59 0 270 218 11 23 chr3 50879916 50880003 -167157155 + L1MCa LINE L1 20 105 -6321 25 0 0 0 chr3 50880726 50880751 -167156407 + AT_rich Low_complexity Low_complexity 1 25 0 891 181 20 0 chr3 50880822 50880971 -167156187 + FRAM SINE Alu 1 152 -14 2299 108 0 0 chr3 50880978 50881273 -167155885 + AluSc SINE Alu 1 295 -14 22 35 0 0 chr3 50881273 50881302 -167155856 + AT_rich Low_complexity Low_complexity 1 29 0 294 224 0 0 chr3 50881302 50881369 -167155789 + Charlie4 DNA MER1_type 1877 1943 -18 195 351 76 23 chr3 50881869 50882000 -167155158 + L2 LINE L2 2940 3077 -195 725 187 0 8 chr3 50882158 50882281 -167154877 + FLAM_A SINE Alu 1 122 -11 25 0 0 0 chr3 50882844 50882869 -167154289 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chr3 50882973 50883015 -167154143 + AT_rich Low_complexity Low_complexity 1 42 0 1913 102 8 0 chr3 50883038 50883294 -167153864 - AluSp SINE Alu -19 294 37 337 97 28 0 chr3 50883884 50883956 -167153202 + (TA)n Simple_repeat Simple_repeat 2 75 0 2426 89 0 0 chr3 50884081 50884383 -167152775 + AluSx SINE Alu 1 302 -10 369 0 0 0 chr3 50884385 50884426 -167152732 + (TG)n Simple_repeat Simple_repeat 2 42 0 4318 138 39 92 chr3 50884771 50885085 -167152073 + L1MA8 LINE L1 5010 5339 -952 1724 174 17 3 chr3 50885085 50885384 -167151774 + AluJo SINE Alu 1 303 -9 4318 138 39 92 chr3 50885384 50886147 -167151011 + L1MA8 LINE L1 5339 6084 -207 477 162 0 0 chr3 50886147 50886221 -167150937 + AluSg/x SINE Alu 153 226 -86 4318 138 39 92 chr3 50886221 50886414 -167150744 + L1MA8 LINE L1 6084 6286 -5 265 242 134 20 chr3 50886582 50886731 -167150427 + L1ME4a LINE L1 5935 6100 -21 2320 98 0 0 chr3 50886925 50887220 -167149938 - AluSc SINE Alu -14 295 1 21 0 0 0 chr3 50887258 50887279 -167149879 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 50887675 50887699 -167149459 + AT_rich Low_complexity Low_complexity 1 24 0 293 200 67 0 chr3 50887823 50887898 -167149260 - L2 LINE L2 -1906 1408 1329 831 301 167 36 chr3 50887919 50888049 -167149109 - L2 LINE L2 -2090 1224 1112 2075 115 7 3 chr3 50888049 50888345 -167148813 + AluSx SINE Alu 3 299 -13 831 301 167 36 chr3 50888345 50888855 -167148303 - L2 LINE L2 -2202 1112 500 1883 163 3 7 chr3 50890144 50890450 -167146708 + AluJb SINE Alu 2 306 -6 27 0 0 0 chr3 50890664 50890691 -167146467 + AT_rich Low_complexity Low_complexity 1 27 0 948 89 0 0 chr3 50892281 50892404 -167144754 + AluSg/x SINE Alu 177 299 -13 30 0 0 0 chr3 50893338 50893368 -167143790 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr3 50893443 50893466 -167143692 + AT_rich Low_complexity Low_complexity 1 23 0 2175 96 0 7 chr3 50893467 50893749 -167143409 + AluSc SINE Alu 1 280 -29 369 0 0 0 chr3 50893752 50893793 -167143365 + (TAA)n Simple_repeat Simple_repeat 2 42 0 852 197 19 5 chr3 50894501 50894709 -167142449 + L1MA4A LINE L1 5912 6122 -181 493 174 0 0 chr3 50894713 50894805 -167142353 + L1MA4A LINE L1 6189 6280 -23 23 78 0 0 chr3 50894830 50894881 -167142277 + AT_rich Low_complexity Low_complexity 1 51 0 2097 117 0 13 chr3 50896512 50896810 -167140348 - AluSg SINE Alu -16 294 1 389 313 97 7 chr3 50897129 50897273 -167139885 + MIR SINE MIR 37 193 -69 2260 89 0 7 chr3 50897491 50897782 -167139376 + AluSp SINE Alu 1 289 -24 31 0 0 0 chr3 50897782 50897813 -167139345 + AT_rich Low_complexity Low_complexity 1 31 0 565 277 89 19 chr3 50897940 50898343 -167138815 - L1MC/D LINE L1 -556 5606 5352 349 210 17 4 chr3 50898393 50898498 -167138660 - L1MC/D LINE L1 -820 5350 5256 241 270 16 0 chr3 50898501 50898564 -167138594 + CT-rich Low_complexity Low_complexity 2 65 0 270 279 16 25 chr3 50898564 50898686 -167138472 - L1MC/D LINE L1 -1126 5020 4900 773 298 66 49 chr3 50898739 50899252 -167137906 + HAL1 LINE L1 351 872 -1635 1277 269 58 40 chr3 50899293 50899587 -167137571 - L1ME LINE L1 -346 5807 5520 2521 53 3 0 chr3 50899587 50899887 -167137271 + AluY SINE Alu 1 301 -10 1277 269 58 40 chr3 50899887 50900386 -167136772 - L1ME LINE L1 -633 5520 4996 388 266 64 29 chr3 50900610 50900991 -167136167 - L1MDb LINE L1 -5121 998 601 1292 171 37 118 chr3 50901771 50902092 -167135066 - AluYb8 SINE Alu -23 295 1 1663 289 255 18 chr3 50902418 50903333 -167133825 - L2 LINE L2 -1 3312 2111 1677 181 107 10 chr3 50903333 50903725 -167133433 - MSTB1 LTR MaLR 0 432 3 1663 289 255 18 chr3 50903725 50903893 -167133265 - L2 LINE L2 -1202 2111 1984 218 180 40 0 chr3 50903971 50904021 -167133137 + (TA)n Simple_repeat Simple_repeat 2 53 0 1713 283 11 25 chr3 50904121 50904672 -167132486 + L1MA6 LINE L1 6 548 -6620 416 302 1 6 chr3 50904900 50905077 -167132081 + L1MA6 LINE L1 1719 1897 -5271 9578 164 85 23 chr3 50905077 50908401 -167128757 + L1MA6 LINE L1 3792 7321 0 29 0 0 0 chr3 50908693 50908722 -167128436 + AT_rich Low_complexity Low_complexity 1 29 0 2346 96 0 10 chr3 50908869 50909181 -167127977 - AluSx SINE Alu -3 309 1 570 287 106 90 chr3 50909183 50909747 -167127411 - L2 LINE L2 -606 2708 2136 252 0 0 0 chr3 50910831 50910859 -167126299 + (TTA)n Simple_repeat Simple_repeat 3 30 0 7464 26 0 0 chr3 50910859 50912284 -167124874 - L1PA4 LINE L1 -18 6137 4706 3642 38 0 0 chr3 50912284 50912753 -167124405 + L1PA4 LINE L1 4267 4735 -1411 929 132 41 30 chr3 50913117 50913314 -167123844 - THE1C LTR MaLR -176 199 1 270 338 155 14 chr3 50913764 50913983 -167123175 - MIR SINE MIR 0 262 13 925 192 109 106 chr3 50914856 50915252 -167121906 + L1MC4 LINE L1 7590 7986 -56 284 333 224 21 chr3 50915316 50915655 -167121503 + L2 LINE L2 2444 2851 -463 380 301 171 10 chr3 50915683 50915876 -167121282 + HAL1 LINE L1 1731 1954 -553 204 97 0 0 chr3 50916068 50916099 -167121059 + (CATA)n Simple_repeat Simple_repeat 2 32 0 2145 88 24 0 chr3 50916520 50916817 -167120341 + AluY SINE Alu 1 304 -7 2063 171 32 44 chr3 50917328 50917411 -167119747 - Cheshire DNA MER1_type -47 2373 2291 1748 177 0 20 chr3 50917411 50917705 -167119453 - AluJb SINE Alu -24 288 1 2063 171 32 44 chr3 50917705 50918119 -167119039 - Cheshire DNA MER1_type -129 2291 1882 531 224 53 0 chr3 50918124 50918276 -167118882 - L1MEc LINE L1 -6200 196 37 225 281 0 0 chr3 50918408 50918472 -167118686 + A-rich Low_complexity Low_complexity 1 64 0 619 345 45 18 chr3 50918501 50918902 -167118256 + L2 LINE L2 2652 3070 -243 360 138 0 0 chr3 50919580 50919645 -167117513 + (TCCC)n Simple_repeat Simple_repeat 3 67 0 1813 128 128 0 chr3 50919647 50919921 -167117237 - AluSq SINE Alu -4 309 1 318 312 65 0 chr3 50920281 50920374 -167116784 + HAL1 LINE L1 45 143 -2364 1099 259 50 86 chr3 50920445 50920950 -167116208 - MLT1E3 LTR MaLR -60 564 81 2240 121 16 50 chr3 50920950 50921138 -167116020 - MER47A DNA MER2_type -1957 366 196 2170 125 0 0 chr3 50921138 50921434 -167115724 - AluSx SINE Alu -16 296 1 2240 121 16 50 chr3 50921434 50921624 -167115534 - MER47A DNA MER2_type -2127 196 1 1099 259 50 86 chr3 50921624 50921702 -167115456 - MLT1E3 LTR MaLR -543 81 2 509 270 94 43 chr3 50921705 50922079 -167115079 + L1MC4a LINE L1 5782 6174 -1634 286 217 11 43 chr3 50922304 50922488 -167114670 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 1645 177 22 78 chr3 50922688 50923101 -167114057 - MLT1B LTR MaLR 0 390 1 525 288 31 70 chr3 50923109 50923338 -167113820 + L1MC4a LINE L1 6681 6900 -908 * 2382 248 64 52 chr3 50923332 50924571 -167112587 - L1M4 LINE L1 -854 5292 4041 3955 267 70 55 chr3 50925406 50927807 -167109351 - L1MDa LINE L1 -1886 4654 1942 1559 114 0 0 chr3 50927807 50928017 -167109141 + AluSg/x SINE Alu 86 295 -15 3955 267 70 55 chr3 50928017 50929884 -167107274 - L1MDa LINE L1 -4598 1942 104 282 341 26 41 chr3 50929972 50930239 -167106919 + L1ME4a LINE L1 5521 5783 -2025 322 269 100 74 chr3 50930258 50930529 -167106629 + L1ME4a LINE L1 5837 6114 -7 28 29 0 0 chr3 50931418 50931453 -167105705 + AT_rich Low_complexity Low_complexity 1 35 0 252 250 108 33 chr3 50931457 50931577 -167105581 + L1P LINE L1 4920 5048 -1098 270 182 0 0 chr3 50931780 50931835 -167105323 + L1M LINE L1 5375 5429 -735 3171 310 101 26 chr3 50931857 50933528 -167103630 - ERVL LTR ERVL -1559 4205 2410 1278 206 29 0 chr3 50933693 50933936 -167103222 + MLT1A1 LTR MaLR 116 365 0 2921 227 96 22 chr3 50934070 50934239 -167102919 + L1ME1 LINE L1 3681 3836 -2330 2263 59 42 7 chr3 50934239 50934525 -167102633 + AluY SINE Alu 1 296 -15 2921 227 96 22 chr3 50934525 50936130 -167101028 + L1ME1 LINE L1 3836 5756 -410 1706 115 103 12 chr3 50936130 50936461 -167100697 + MER46B DNA MER2_type 1 236 0 2921 227 96 22 chr3 50936461 50936846 -167100312 + L1ME1 LINE L1 5756 6111 -55 26 74 0 0 chr3 50936860 50936914 -167100244 + AT_rich Low_complexity Low_complexity 1 54 0 277 110 73 29 chr3 50936914 50937050 -167100108 + (TA)n Simple_repeat Simple_repeat 2 143 0 315 341 98 6 chr3 50937256 50937429 -167099729 + L1 LINE L1 2633 2821 -3325 1724 163 0 27 chr3 50937438 50937738 -167099420 + AluJo SINE Alu 11 302 -10 839 124 35 0 chr3 50937851 50937996 -167099162 - L1MA3 LINE L1 -225 6080 5931 22 88 0 0 chr3 50938010 50938067 -167099091 + AT_rich Low_complexity Low_complexity 1 57 0 1706 148 44 68 chr3 50938087 50938290 -167098868 - THE1C LTR MaLR 0 375 184 2373 81 7 10 chr3 50938290 50938597 -167098561 - AluY SINE Alu -5 306 1 1706 148 44 68 chr3 50938597 50938777 -167098381 - THE1C LTR MaLR -191 184 1 537 280 118 29 chr3 50938843 50939122 -167098036 + L1 LINE L1 3013 3316 -2830 1410 240 42 0 chr3 50939162 50939516 -167097642 - L1ME3 LINE L1 -325 5837 5469 650 168 118 0 chr3 50940097 50940216 -167096942 + FLAM_C SINE Alu 1 133 -10 277 289 181 54 chr3 50940301 50940467 -167096691 + MIR SINE MIR 2 188 -74 5474 39 1 1 chr3 50940542 50941204 -167095954 + L1PA5 LINE L1 5493 6154 0 2223 110 0 0 chr3 50941623 50941913 -167095245 + AluSg1 SINE Alu 1 290 -19 342 235 111 20 chr3 50941951 50942077 -167095081 - MIR SINE MIR -10 252 114 911 127 0 158 chr3 50942325 50942553 -167094605 - 7SK RNA RNA -1 192 1 269 203 143 38 chr3 50943131 50943264 -167093894 - HAL1 LINE L1 -258 2249 2103 482 328 43 46 chr3 50943292 50943550 -167093608 + L1ME LINE L1 5458 5716 -405 2132 119 24 21 chr3 50943550 50943886 -167093272 + MER1B DNA MER1_type 1 337 0 482 328 43 46 chr3 50943886 50943950 -167093208 + L1ME LINE L1 5716 5779 -342 1147 228 47 26 chr3 50944039 50944404 -167092754 + MLT1G1 LTR MaLR 161 595 0 363 236 0 0 chr3 50944542 50944614 -167092544 - Tigger5 DNA MER2_type 0 2323 2252 227 296 0 0 chr3 50944585 50944639 -167092519 - Tigger5 DNA MER2_type -2269 54 1 * 2108 126 0 10 chr3 50946146 50946448 -167090710 - AluSx SINE Alu -13 299 1 19969 31 9 0 chr3 50947676 50950862 -167086296 + L1PA4 LINE L1 2958 6152 -3 32 57 0 0 chr3 50950863 50950916 -167086242 + AT_rich Low_complexity Low_complexity 1 53 0 2347 97 0 0 chr3 50951036 50951335 -167085823 - AluSx SINE Alu -13 299 1 356 305 127 19 chr3 50951413 50951961 -167085197 - L1ME3A LINE L1 -268 5902 5257 326 305 93 8 chr3 50952082 50952200 -167084958 + L1MC4a LINE L1 5737 5864 -1944 10555 29 0 0 chr3 50952219 50953494 -167083664 - L1HS LINE L1 -2155 3991 2717 11837 16 0 0 chr3 50953494 50955634 -167081524 + L1HS LINE L1 4015 6155 0 1206 199 17 47 chr3 50955653 50955949 -167081209 + AluJb SINE Alu 1 287 -25 41 0 0 0 chr3 50955987 50956028 -167081130 + AT_rich Low_complexity Low_complexity 1 41 0 239 275 33 8 chr3 50956595 50956733 -167080425 + (TAGA)n Simple_repeat Simple_repeat 1 141 0 1751 50 0 0 chr3 50956868 50957070 -167080088 + AluY SINE Alu 98 299 -12 322 222 76 42 chr3 50957071 50957215 -167079943 + L1MC5 LINE L1 7616 7764 -197 1237 123 0 0 chr3 50957359 50957538 -167079620 + AluSq SINE Alu 119 297 -16 240 186 72 41 chr3 50957543 50957640 -167079518 + L1MC5 LINE L1 7813 7912 -49 1937 160 7 0 chr3 50958840 50959134 -167078024 + AluSx SINE Alu 1 296 -16 597 250 0 0 chr3 50959141 50959257 -167077901 - FLAM_A SINE Alu -26 116 1 2174 100 10 0 chr3 50959737 50960026 -167077132 + AluSp SINE Alu 1 292 -21 545 262 173 38 chr3 50960694 50961087 -167076071 + L1ME4a LINE L1 5662 6107 -14 249 359 107 4 chr3 50961397 50961631 -167075527 + L2 LINE L2 2804 3061 -252 1847 144 20 7 chr3 50961904 50962202 -167074956 + AluJo SINE Alu 1 302 -10 23 68 0 0 chr3 50962212 50962256 -167074902 + AT_rich Low_complexity Low_complexity 1 44 0 2471 254 41 32 chr3 50962330 50963164 -167073994 + L1MDa LINE L1 34 1023 -5517 944 136 0 0 chr3 50963177 50963332 -167073826 + L1MB2 LINE L1 6014 6168 -3 25 31 0 0 chr3 50963422 50963454 -167073704 + AT_rich Low_complexity Low_complexity 1 32 0 2277 71 0 20 chr3 50964008 50964303 -167072855 + AluY SINE Alu 22 310 -1 312 262 48 48 chr3 50964317 50964443 -167072715 - MER103 DNA DNA -26 140 15 600 255 157 0 chr3 50964512 50964665 -167072493 - MER5A DNA MER1_type -6 183 7 854 261 57 4 chr3 50965775 50966005 -167071153 - MIR SINE MIR -3 259 18 554 31 0 0 chr3 50966757 50966822 -167070336 - AluY SINE Alu -190 121 57 1238 156 0 5 chr3 50966822 50967014 -167070144 - AluSx SINE Alu -121 191 1 2040 131 7 0 chr3 50968477 50968783 -167068375 + AluSq SINE Alu 1 308 -5 745 256 23 0 chr3 50969535 50969707 -167067451 - MER5A DNA MER1_type 0 189 14 750 291 179 20 chr3 50969854 50969968 -167067190 - L2 LINE L2 0 3313 3218 2258 109 10 0 chr3 50969968 50970271 -167066887 + AluSg SINE Alu 1 306 -4 750 291 179 20 chr3 50970271 50970627 -167066531 - L2 LINE L2 -95 3218 2770 415 303 72 81 chr3 50971273 50971593 -167065565 - L2 LINE L2 -554 2760 2444 1725 236 119 41 chr3 50971799 50971895 -167065263 + L1MC4 LINE L1 6460 6547 -1495 1887 156 3 10 chr3 50971895 50972197 -167064961 + AluSg SINE Alu 3 302 -8 1725 236 119 41 chr3 50972197 50972737 -167064421 + L1MC4 LINE L1 6547 7146 -896 621 225 51 0 chr3 50972776 50972914 -167064244 + MER58C DNA MER1_type 71 215 0 330 218 109 18 chr3 50972914 50973024 -167064134 + L1MC4a LINE L1 7058 7177 -631 * 442 243 34 7 chr3 50973013 50973161 -167063997 + L1MC4 LINE L1 7495 7646 -396 2098 140 0 3 chr3 50973161 50973550 -167063608 + AluSq SINE Alu 1 388 0 782 330 88 39 chr3 50974141 50974804 -167062354 - L2 LINE L2 -1387 1927 1233 1820 169 3 7 chr3 50975163 50975458 -167061700 + AluSx SINE Alu 1 294 -18 229 152 0 0 chr3 50976137 50976170 -167060988 + Alu SINE Alu 217 249 -53 2634 262 72 50 chr3 50976256 50977157 -167060001 + L1MEc LINE L1 498 1378 -5018 1763 195 0 3 chr3 50977157 50977465 -167059693 + AluJo SINE Alu 6 312 0 2634 262 72 50 chr3 50977465 50977889 -167059269 + L1MEc LINE L1 1378 1860 -4536 1635 201 3 7 chr3 50977889 50978183 -167058975 - AluJb SINE Alu -19 293 1 2634 262 72 50 chr3 50978183 50978314 -167058844 + L1MEc LINE L1 1860 1987 -4409 2225 97 0 24 chr3 50978469 50978767 -167058391 + AluSg SINE Alu 1 291 -19 526 186 73 0 chr3 50978815 50978939 -167058219 + L1MEc LINE L1 2680 2812 -3403 351 258 30 77 chr3 50978951 50979074 -167058084 + L1M4 LINE L1 4969 5077 -1069 20459 29 2 0 chr3 50979074 50982306 -167054852 - L1PA3 LINE L1 -5 6150 2915 351 258 30 77 chr3 50982306 50982415 -167054743 + L1M4 LINE L1 5077 5190 -956 1475 178 80 7 chr3 50982452 50982727 -167054431 + AluJb SINE Alu 3 297 -15 421 323 94 10 chr3 50983054 50983255 -167053903 + MIR SINE MIR 45 262 0 2314 97 3 0 chr3 50984470 50984779 -167052379 + AluSg SINE Alu 1 310 0 278 253 11 11 chr3 50984826 50984917 -167052241 - L1MEd LINE L1 -6027 92 2 413 301 154 33 chr3 50985085 50985474 -167051684 - L1M4 LINE L1 -1154 4992 4557 238 305 0 0 chr3 50985839 50985921 -167051237 - L1MEc LINE L1 -3127 3088 3007 848 141 0 56 chr3 50986116 50986258 -167050900 + AluJo SINE Alu 1 134 -178 195 42 0 0 chr3 50986457 50986481 -167050677 + (TTTTA)n Simple_repeat Simple_repeat 5 28 0 1911 140 7 11 chr3 50986484 50986770 -167050388 - AluJo SINE Alu -27 285 1 1090 195 146 26 chr3 50986778 50987045 -167050113 - AluJo SINE Alu -3 299 1 21 36 0 0 chr3 50987171 50987199 -167049959 + AT_rich Low_complexity Low_complexity 1 28 0 225 232 176 16 chr3 50987262 50987387 -167049771 + MER103 DNA DNA 2 146 -20 1781 154 7 18 chr3 50987583 50987899 -167049259 + AluJb SINE Alu 1 313 0 217 327 0 0 chr3 50988122 50988177 -167048981 + MIR SINE MIR 21 75 -133 1357 123 78 12 chr3 50988655 50988899 -167048259 + L1PA10 LINE L1 5909 6168 0 230 265 141 44 chr3 50989920 50990460 -167046698 - L1MEc LINE L1 -3314 2901 2310 2281 101 0 0 chr3 50990492 50990779 -167046379 - AluSg SINE Alu -12 298 12 362 271 60 40 chr3 50990791 50990942 -167046216 - L1MEc LINE L1 -4090 2306 2153 259 311 55 0 chr3 50991369 50991552 -167045606 + L1ME LINE L1 4957 5149 -997 677 162 0 19 chr3 50991554 50991659 -167045499 + FLAM_A SINE Alu 4 106 -36 263 175 16 0 chr3 50991727 50991790 -167045368 + L1ME LINE L1 5135 5198 -948 208 225 0 0 chr3 50991796 50991836 -167045322 + (CA)n Simple_repeat Simple_repeat 1 40 0 560 258 16 42 chr3 50992009 50992118 -167045040 + L1ME LINE L1 5339 5449 -707 1425 168 116 0 chr3 50992118 50992386 -167044772 + AluJb SINE Alu 1 299 -13 560 258 16 42 chr3 50992386 50992503 -167044655 + L1ME LINE L1 5449 5561 -595 225 0 0 0 chr3 50992650 50992675 -167044483 + (TG)n Simple_repeat Simple_repeat 2 26 0 600 143 7 2 chr3 50992838 50992953 -167044205 - L1PA10 LINE L1 -331 5837 5720 2456 121 23 5 chr3 50992975 50993362 -167043796 + L1PA16 LINE L1 5764 6157 -9 2462 115 23 52 chr3 50993370 50993850 -167043308 + L1M1 LINE L1 5256 5721 -579 3291 134 67 9 chr3 50995804 50996385 -167040773 + L1PA16 LINE L1 5550 6164 -2 251 337 172 42 chr3 50996481 50997653 -167039505 + L2 LINE L2 793 2117 -1197 313 320 107 15 chr3 50997653 50997850 -167039308 + L2 LINE L2 2687 2901 -413 2080 130 0 28 chr3 50997981 50998303 -167038855 - AluSq SINE Alu 0 313 1 2399 70 7 3 chr3 50998307 50998606 -167038552 - AluY SINE Alu -11 300 1 538 284 118 28 chr3 50998619 50999018 -167038140 - L2 LINE L2 -135 3178 2743 2045 176 0 0 chr3 50999465 50999767 -167037391 + AluSx SINE Alu 1 302 -10 40817 48 5 1 chr3 50999767 51005889 -167031269 + L1PA4 LINE L1 4 6151 -4 507 260 98 17 chr3 51005949 51006184 -167030974 + L1ME1 LINE L1 5904 6157 -9 1639 147 16 8 chr3 51006586 51006884 -167030274 - AluJb SINE Alu 0 327 28 483 116 23 0 chr3 51007018 51007104 -167030054 + HSMAR2 DNA Mariner 1176 1263 -39 8292 105 8 15 chr3 51007117 51008872 -167028286 - L1PA8 LINE L1 0 6172 4416 2283 104 0 3 chr3 51008872 51009181 -167027977 - AluY SINE Alu -3 308 1 8292 105 8 15 chr3 51009181 51009484 -167027674 - L1PA8 LINE L1 -1756 4416 4113 41 58 0 0 chr3 51009604 51009673 -167027485 + AT_rich Low_complexity Low_complexity 1 69 0 25 0 0 0 chr3 51009856 51009881 -167027277 + AT_rich Low_complexity Low_complexity 1 25 0 272 258 0 45 chr3 51009885 51009974 -167027184 + L1M4 LINE L1 4513 4597 -1549 348 324 56 0 chr3 51009981 51010194 -167026964 + L1M4 LINE L1 4529 4753 -1393 1025 147 0 6 chr3 51010356 51010512 -167026646 + AluJb SINE Alu 10 164 -148 884 167 0 0 chr3 51010673 51010811 -167026347 + AluJb SINE Alu 161 298 -14 1875 136 0 0 chr3 51011798 51012056 -167025102 - AluSg SINE Alu -52 258 1 226 305 68 8 chr3 51012089 51012207 -167024951 - MIR SINE MIR -85 177 53 274 248 181 0 chr3 51012570 51012675 -167024483 + MER5C DNA MER1_type 1 124 -200 1020 220 49 61 chr3 51012810 51013151 -167024007 - L1ME1 LINE L1 -5 6161 5824 2111 136 10 0 chr3 51013151 51013446 -167023712 - AluSx SINE Alu -14 298 1 1020 220 49 61 chr3 51013446 51013495 -167023663 - L1ME1 LINE L1 -342 5824 5776 236 241 0 0 chr3 51013657 51013711 -167023447 + MER116 DNA Mariner 7 60 -20 1983 164 57 20 chr3 51013729 51014271 -167022887 + L1MD1 LINE L1 2007 2568 -3972 464 233 20 7 chr3 51014257 51014403 -167022755 + L1MD1 LINE L1 2809 2956 -3584 * 1498 150 95 45 chr3 51014401 51014653 -167022505 + L1MA7 LINE L1 5887 6166 -125 2030 125 29 0 chr3 51014653 51014933 -167022225 + AluSg SINE Alu 1 288 -22 1498 150 95 45 chr3 51014933 51015059 -167022099 + L1MA7 LINE L1 6166 6284 -7 1428 226 33 14 chr3 51015235 51015726 -167021432 + L1MD1 LINE L1 4598 5097 -1443 1042 179 0 41 chr3 51015732 51015927 -167021231 + AluJo SINE Alu 1 187 -125 5725 113 46 34 chr3 51015930 51017739 -167019419 + SVA Other Other 1 1386 0 22 0 0 0 chr3 51017763 51017785 -167019373 + AT_rich Low_complexity Low_complexity 1 22 0 693 186 31 0 chr3 51017785 51017914 -167019244 + AluJo SINE Alu 177 309 -3 1239 226 30 38 chr3 51017929 51017980 -167019178 + L1MD1 LINE L1 5118 5168 -1372 2601 131 46 0 chr3 51017980 51018393 -167018765 + MSTB1 LTR MaLR 1 432 0 1239 226 30 38 chr3 51018393 51018735 -167018423 + L1MD1 LINE L1 5168 5508 -1032 1068 144 0 0 chr3 51018734 51018929 -167018229 + L1MD1 LINE L1 5733 5927 -709 * 3638 127 67 74 chr3 51018929 51020309 -167016849 - pTR5 LTR ERV1 0 2438 66 2832 174 22 62 chr3 51020309 51020547 -167016611 + L1MD1 LINE L1 5924 6170 -466 2539 44 3 0 chr3 51020547 51020843 -167016315 - AluY SINE Alu -14 297 1 2832 174 22 62 chr3 51020843 51021295 -167015863 + L1MD1 LINE L1 6170 6586 -50 439 87 0 12 chr3 51021317 51021389 -167015769 + MSTB1 LTR MaLR 4 63 -369 316 111 0 0 chr3 51021391 51021445 -167015713 + L1MD2 LINE L1 6305 6358 -1 205 125 0 71 chr3 51021830 51021886 -167015272 + (TAAAAA)n Simple_repeat Simple_repeat 2 53 0 2111 139 0 0 chr3 51022102 51022404 -167014754 + AluSx SINE Alu 1 302 -10 419 233 106 0 chr3 51024452 51024614 -167012544 + MLT1J2 LTR MaLR 33 225 -184 308 133 17 17 chr3 51024704 51024764 -167012394 + MLT1I LTR MaLR 346 405 -4 1971 184 10 8 chr3 51024998 51025383 -167011775 + L1MC1 LINE L1 5922 6307 -26 7312 37 9 0 chr3 51025397 51026571 -167010587 - L1PA4 LINE L1 -5 6150 4971 5690 26 0 0 chr3 51026571 51027270 -167009888 - L1PA4 LINE L1 -1909 4237 3539 4404 39 20 3 chr3 51027268 51027880 -167009278 + L1PA4 LINE L1 2931 3552 -2594 * 276 247 95 51 chr3 51028024 51028182 -167008976 + L1MEd LINE L1 6 170 -5949 1070 188 11 0 chr3 51028679 51028865 -167008293 - MER5A DNA MER1_type 0 189 2 472 276 16 0 chr3 51028868 51028991 -167008167 - MER5B DNA MER1_type -2 176 52 3659 179 30 12 chr3 51028996 51029729 -167007429 + MER49 LTR ERV1 178 923 0 395 302 53 40 chr3 51029881 51030106 -167007052 + HERVL LTR ERVL 1351 1578 -4076 234 0 0 0 chr3 51030529 51030555 -167006603 + (A)n Simple_repeat Simple_repeat 1 26 0 342 293 0 0 chr3 51032066 51032148 -167005010 + L1MC4 LINE L1 6622 6703 -1339 * 343 280 144 0 chr3 51032132 51032250 -167004908 - L1MC4 LINE L1 -1339 6703 6569 1216 197 0 13 chr3 51032273 51032506 -167004652 + AluJb SINE Alu 71 300 -12 204 271 148 52 chr3 51032704 51032859 -167004299 + L2 LINE L2 1178 1347 -1967 3405 179 24 31 chr3 51032879 51033717 -167003441 - L1 LINE L1 -2352 5213 4382 1980 139 7 7 chr3 51033723 51034033 -167003125 - AluSx SINE Alu -2 310 1 1675 156 64 41 chr3 51034091 51034386 -167002772 - AluJb SINE Alu -10 302 1 2061 131 0 38 chr3 51035229 51035549 -167001609 - AluSg SINE Alu -2 308 1 19032 155 41 25 chr3 51035555 51037402 -166999756 - L1 LINE L1 -3230 4335 2519 1819 140 52 0 chr3 51037402 51037688 -166999470 - AluJb SINE Alu -11 301 1 19032 155 41 25 chr3 51037688 51039926 -166997232 - L1 LINE L1 -5046 2519 178 414 0 0 0 chr3 51039926 51039972 -166997186 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 19032 155 41 25 chr3 51039972 51040137 -166997021 - L1 LINE L1 -7387 178 17 490 214 0 0 chr3 51040211 51040295 -166996863 + AluJ/FLAM SINE Alu 1 84 -228 2342 109 6 3 chr3 51040569 51040880 -166996278 + AluSx SINE Alu 1 312 0 396 325 117 7 chr3 51040881 51041179 -166995979 + L2 LINE L2 1782 2112 -1202 400 313 70 0 chr3 51041184 51041299 -166995859 + L2 LINE L2 3146 3268 -4 29 0 0 0 chr3 51041302 51041331 -166995827 + AT_rich Low_complexity Low_complexity 1 29 0 824 202 108 0 chr3 51041342 51041629 -166995529 + L1M4 LINE L1 4963 5280 -866 2350 119 9 6 chr3 51041912 51042248 -166994910 - MER1B DNA MER1_type 0 337 1 449 238 96 104 chr3 51042309 51042810 -166994348 - L1MEc LINE L1 -2598 3531 3035 621 271 0 7 chr3 51042824 51042964 -166994194 + MER5A DNA MER1_type 1 139 -50 1676 144 7 26 chr3 51042986 51043256 -166993902 - AluSx SINE Alu -47 265 1 313 180 49 16 chr3 51043259 51043320 -166993838 + MER5A DNA MER1_type 127 189 0 1560 254 92 49 chr3 51043323 51044062 -166993096 - L1MEc LINE L1 -3118 3011 2305 1825 145 3 33 chr3 51044062 51044366 -166992792 - AluSx SINE Alu -8 304 10 1560 254 92 49 chr3 51044366 51044578 -166992580 - L1MEc LINE L1 -3824 2305 2103 574 126 53 0 chr3 51044578 51044673 -166992485 - HY3 scRNA scRNA -1 100 1 1560 254 92 49 chr3 51044673 51044842 -166992316 - L1MEc LINE L1 -4026 2103 1886 1943 135 7 21 chr3 51044874 51045163 -166991995 + AluSx SINE Alu 5 289 -23 1052 297 97 29 chr3 51045254 51046089 -166991069 - L1MEc LINE L1 -4443 1867 976 778 217 118 146 chr3 51046087 51046406 -166990752 - L1MD2 LINE L1 -8 6349 5931 * 1992 137 77 8 chr3 51046406 51046757 -166990401 + THE1C LTR MaLR 1 375 0 778 217 118 146 chr3 51046757 51046903 -166990255 - L1MD2 LINE L1 -426 5931 5782 1038 246 92 3 chr3 51046983 51047516 -166989642 - L1MD2 LINE L1 -741 5618 5049 301 333 80 123 chr3 51048283 51048450 -166988708 - L1MEc LINE L1 -5536 583 437 2187 119 0 0 chr3 51048450 51048752 -166988406 + AluSg1 SINE Alu 1 302 -7 301 333 80 123 chr3 51048752 51048935 -166988223 - L1MEc LINE L1 -5682 437 248 259 309 0 0 chr3 51049020 51049114 -166988044 - L1MEc LINE L1 -5963 156 63 2129 129 7 7 chr3 51049121 51049431 -166987727 - AluSx SINE Alu -2 310 1 22 70 0 0 chr3 51049540 51049583 -166987575 + AT_rich Low_complexity Low_complexity 1 43 0 25 40 0 20 chr3 51050123 51050144 -166987014 + AT_rich Low_complexity Low_complexity 1 21 -28 1805 125 30 17 chr3 51050144 51050439 -166986719 + L1PB3 LINE L1 5855 6153 -1 25 40 0 20 chr3 51050439 51050467 -166986691 + AT_rich Low_complexity Low_complexity 21 49 0 1611 186 3 20 chr3 51050469 51050764 -166986394 + AluJo SINE Alu 1 290 -22 602 172 0 0 chr3 51050848 51050941 -166986217 + AluJo SINE Alu 1 93 -219 191 222 0 0 chr3 51050943 51050979 -166986179 + MIR SINE MIR 222 257 -5 1018 184 58 34 chr3 51051002 51051209 -166985949 + AluJo SINE Alu 82 293 -19 463 242 39 73 chr3 51051389 51051695 -166985463 + L1MC5 LINE L1 7228 7394 -414 1179 259 140 39 chr3 51051992 51052606 -166984552 + L1ME3A LINE L1 5487 6162 -8 1910 134 32 0 chr3 51052920 51053203 -166983955 - AluSx SINE Alu -20 292 1 229 162 0 0 chr3 51053420 51053457 -166983701 - Alu SINE Alu -262 37 1 281 223 78 10 chr3 51053460 51053563 -166983595 + L1ME4a LINE L1 6001 6110 -11 478 111 0 0 chr3 51053623 51053686 -166983472 + AluJ/FLAM SINE Alu 9 71 -241 2188 121 28 3 chr3 51053689 51054012 -166983146 + MER1B DNA MER1_type 3 333 -4 2215 178 12 2 chr3 51054034 51054451 -166982707 + LOR1b LTR ERV1 41 461 0 1082 191 23 23 chr3 51054459 51054679 -166982479 + AluJo SINE Alu 84 303 -9 24 0 0 0 chr3 51054701 51054725 -166982433 + AT_rich Low_complexity Low_complexity 1 24 0 1889 156 3 13 chr3 51055038 51055339 -166981819 - AluJo SINE Alu -14 298 1 1349 110 5 20 chr3 51055590 51055790 -166981368 + AluJb SINE Alu 116 312 0 647 168 28 151 chr3 51056091 51056248 -166980910 + Charlie5 DNA MER1_type 1 176 -2448 1873 175 0 0 chr3 51056248 51056545 -166980613 + AluSx SINE Alu 1 297 -15 2203 100 7 0 chr3 51056547 51056838 -166980320 + AluSp SINE Alu 1 293 -20 647 168 28 151 chr3 51056838 51056939 -166980219 + Charlie5 DNA MER1_type 177 289 -2335 2521 66 0 0 chr3 51056939 51057244 -166979914 + AluY SINE Alu 1 305 -6 647 168 28 151 chr3 51057244 51057353 -166979805 + Charlie5 DNA MER1_type 289 2624 0 1049 208 254 40 chr3 51057442 51057918 -166979240 + L2 LINE L2 1108 1685 -1629 763 169 48 0 chr3 51058328 51058452 -166978706 + AluSg/x SINE Alu 159 288 -24 285 282 64 0 chr3 51058497 51058607 -166978551 + L2 LINE L2 1710 1826 -1488 839 161 0 0 chr3 51058625 51058749 -166978409 - FLAM_C SINE Alu -19 124 1 496 291 116 5 chr3 51058749 51058938 -166978220 + L2 LINE L2 1824 2033 -1281 554 273 141 70 chr3 51059467 51059951 -166977207 + L2 LINE L2 2029 2546 -768 820 215 63 17 chr3 51059951 51060188 -166976970 + L1ME3A LINE L1 5916 6163 -7 920 221 75 26 chr3 51060198 51060505 -166976653 + L1ME2 LINE L1 5793 6114 -50 1986 66 62 0 chr3 51061051 51061308 -166975850 + AluY SINE Alu 1 273 -38 186 239 0 43 chr3 51061610 51061656 -166975502 + L2 LINE L2 3211 3254 -18 2080 129 0 3 chr3 51062174 51062469 -166974689 + AluSx SINE Alu 1 294 -18 187 300 0 0 chr3 51062469 51062509 -166974649 - MIR SINE MIR -20 242 203 295 190 0 0 chr3 51062533 51062591 -166974567 + L1M4 LINE L1 3737 3794 -2352 1682 146 67 0 chr3 51062728 51062995 -166974163 - AluJo SINE Alu -27 285 1 2244 102 0 10 chr3 51063052 51063345 -166973813 + AluSx SINE Alu 1 290 -22 275 321 0 24 chr3 51063573 51063657 -166973501 + L3b LINE CR1 1272 1353 -230 1826 180 3 3 chr3 51063858 51064169 -166972989 + AluSx SINE Alu 1 311 -1 216 0 0 0 chr3 51064502 51064526 -166972632 + (A)n Simple_repeat Simple_repeat 1 24 0 358 43 0 0 chr3 51064693 51064740 -166972418 - MADE1 DNA Mariner 0 80 34 528 283 105 11 chr3 51065382 51065573 -166971585 - L2 LINE L2 -1 3312 3104 387 194 14 0 chr3 51065624 51065696 -166971462 - MER33 DNA MER1_type -246 78 6 21 0 0 0 chr3 51067435 51067456 -166969702 + AT_rich Low_complexity Low_complexity 1 21 0 1069 179 20 10 chr3 51068172 51068368 -166968790 - AluJo SINE Alu -111 201 4 480 273 16 0 chr3 51068765 51068893 -166968265 + MER3 DNA MER1_type 1 130 -79 1888 162 17 0 chr3 51068905 51069195 -166967963 - AluSx SINE Alu -17 295 1 336 305 80 33 chr3 51069246 51069397 -166967761 + MIR SINE MIR 88 245 -17 22 0 0 0 chr3 51069408 51069430 -166967728 + AT_rich Low_complexity Low_complexity 1 22 0 222 274 118 39 chr3 51069485 51069587 -166967571 + L2 LINE L2 3156 3265 -48 2303 81 3 13 chr3 51069792 51070090 -166967068 - AluSg SINE Alu -15 295 1 258 304 115 52 chr3 51070321 51070512 -166966646 + MIR SINE MIR 4 206 -56 2264 88 3 14 chr3 51070757 51071053 -166966105 + AluSx SINE Alu 2 294 -18 806 193 6 77 chr3 51071098 51071279 -166965879 + AluJo SINE Alu 1 168 -144 202 182 0 36 chr3 51071329 51071384 -166965774 + A-rich Low_complexity Low_complexity 1 53 0 394 281 58 75 chr3 51072538 51072682 -166964476 + HAL1 LINE L1 1027 1172 -1335 1183 114 30 42 chr3 51072682 51072919 -166964239 + L1PA13 LINE L1 5925 6158 -5 2821 135 95 4 chr3 51072919 51073464 -166963694 + L1MB7 LINE L1 5570 6168 -16 394 281 58 75 chr3 51073464 51073596 -166963562 + HAL1 LINE L1 1170 1299 -1208 2135 125 7 0 chr3 51073615 51073912 -166963246 + AluSx SINE Alu 1 299 -13 984 148 42 21 chr3 51074094 51074560 -166962598 + L1MB4 LINE L1 5190 5863 -317 3324 134 0 6 chr3 51074560 51075060 -166962098 + LOR1a LTR ERV1 1 497 0 1143 159 42 8 chr3 51075060 51075299 -166961859 + L1MB4 LINE L1 5922 6168 -12 378 316 40 9 chr3 51075397 51075625 -166961533 + L1ME LINE L1 5485 5719 -402 313 243 0 14 chr3 51076062 51076132 -166961026 - MER8 DNA MER2_type -170 69 1 362 265 135 38 chr3 51076569 51076796 -166960362 - MIR SINE MIR -17 245 9 908 150 0 15 chr3 51077119 51077252 -166959906 + FLAM_C SINE Alu 2 132 -1 23 0 0 0 chr3 51077475 51077498 -166959660 + AT_rich Low_complexity Low_complexity 1 23 0 2356 99 3 0 chr3 51078240 51078544 -166958614 - AluSq SINE Alu -8 305 1 473 274 55 18 chr3 51080768 51080932 -166956226 - L2 LINE L2 0 3313 3144 424 183 24 12 chr3 51081160 51081242 -166955916 - U8 snRNA snRNA -50 86 4 659 244 13 0 chr3 51081242 51081398 -166955760 + L1MD3 LINE L1 7828 7985 -10 1689 81 45 9 chr3 51081490 51081712 -166955446 - MER30 DNA MER1_type 0 230 1 303 294 58 0 chr3 51082965 51083092 -166954066 - MIR SINE MIR -55 153 54 2567 68 0 3 chr3 51083160 51083470 -166953688 - AluY SINE Alu -2 309 1 2066 137 7 0 chr3 51083470 51083769 -166953389 - AluSx SINE Alu -11 301 1 2327 95 7 0 chr3 51084288 51084593 -166952565 + AluSg SINE Alu 1 307 -3 245 326 160 0 chr3 51084725 51084906 -166952252 + MIR SINE MIR 20 229 -33 294 304 43 0 chr3 51084954 51085092 -166952066 - L2 LINE L2 -619 2695 2552 2145 123 3 0 chr3 51085293 51085594 -166951564 + AluSq SINE Alu 1 302 -11 432 145 132 0 chr3 51085925 51086001 -166951157 + AluJ/FRAM SINE Alu 216 301 -11 1597 185 18 7 chr3 51086141 51086459 -166950699 + AluJb SINE Alu 1 321 0 4007 186 39 17 chr3 51086810 51087783 -166949375 + L1MB8 LINE L1 4463 5460 -724 1085 105 7 0 chr3 51087783 51087926 -166949232 + AluSq/x SINE Alu 1 144 -169 2602 46 0 0 chr3 51087926 51088228 -166948930 + AluY SINE Alu 1 302 -9 1646 195 0 14 chr3 51088233 51088530 -166948628 + AluJo SINE Alu 1 293 -19 1554 145 30 146 chr3 51088530 51088703 -166948455 + L1MB8 LINE L1 5598 5790 -388 2301 90 7 0 chr3 51088703 51089003 -166948155 + AluSc SINE Alu 1 302 -7 1554 145 30 146 chr3 51089003 51089283 -166947875 + L1MB8 LINE L1 5790 6084 -94 1658 170 0 11 chr3 51089283 51089566 -166947592 - AluJo SINE Alu -9 303 24 1554 145 30 146 chr3 51089566 51089651 -166947507 + L1MB8 LINE L1 6084 6177 -1 2272 105 0 0 chr3 51090439 51090734 -166946424 - AluSg SINE Alu -15 295 1 588 68 14 0 chr3 51090843 51090917 -166946241 - AluS SINE Alu -235 77 3 2021 136 16 7 chr3 51091040 51091349 -166945809 + AluSx SINE Alu 1 312 0 1224 218 29 0 chr3 51091461 51091700 -166945458 + AluJb SINE Alu 51 296 -16 860 134 0 0 chr3 51092594 51092713 -166944445 + FLAM_C SINE Alu 1 119 -24 28 29 0 0 chr3 51092720 51092755 -166944403 + AT_rich Low_complexity Low_complexity 1 35 0 1936 171 0 3 chr3 51092769 51093073 -166944085 + AluJb SINE Alu 1 303 -9 321 315 22 0 chr3 51093121 51093213 -166943945 - MLT1I LTR MaLR -214 195 102 2350 70 0 0 chr3 51093465 51093751 -166943407 - AluY SINE Alu -24 287 2 1813 175 0 0 chr3 51093910 51094190 -166942968 + AluJb SINE Alu 3 282 -30 227 316 51 10 chr3 51094273 51094371 -166942787 + MARNA DNA Mariner 275 376 -210 454 308 126 45 chr3 51094573 51094962 -166942196 + L1ME4a LINE L1 5412 5843 -278 1847 116 34 4 chr3 51094962 51095230 -166941928 + AluSx SINE Alu 1 276 -36 454 308 126 45 chr3 51095230 51095285 -166941873 + L1ME4a LINE L1 5843 5892 -229 23 0 0 0 chr3 51095503 51095526 -166941632 + AT_rich Low_complexity Low_complexity 1 23 0 1711 172 0 30 chr3 51096628 51096925 -166940233 - AluJb SINE Alu -24 288 1 2116 135 0 0 chr3 51096932 51097235 -166939923 - AluSq SINE Alu -10 303 1 899 201 6 6 chr3 51097460 51097634 -166939524 + AluJo SINE Alu 12 185 -127 2112 83 3 28 chr3 51097927 51098263 -166938895 + AluSg SINE Alu 1 329 0 2401 87 0 3 chr3 51098820 51099129 -166938029 - AluY SINE Alu -3 308 1 1956 149 0 0 chr3 51099548 51099844 -166937314 + AluSx SINE Alu 1 296 -16 753 279 148 17 chr3 51100305 51100649 -166936509 - MLT1I LTR MaLR -4 405 17 237 277 54 77 chr3 51100724 51100854 -166936304 - MIR SINE MIR -61 147 21 195 281 35 0 chr3 51101139 51101196 -166935962 + L2 LINE L2 3255 3313 0 1910 141 3 0 chr3 51101271 51101554 -166935604 + AluSq SINE Alu 14 297 -16 2242 77 0 14 chr3 51101558 51101864 -166935294 + AluY SINE Alu 1 302 0 2011 129 3 16 chr3 51102100 51102411 -166934747 + AluSx SINE Alu 1 307 -5 1200 219 12 8 chr3 51102434 51102681 -166934477 + AluJo SINE Alu 1 248 -64 238 191 21 0 chr3 51102685 51102732 -166934426 + GA-rich Low_complexity Low_complexity 3 50 0 560 296 91 77 chr3 51102889 51103118 -166934040 - LTR16B LTR ERVL -2 462 238 2110 126 19 7 chr3 51103118 51103427 -166933731 + AluSq SINE Alu 1 313 0 560 296 91 77 chr3 51103427 51103445 -166933713 - LTR16B LTR ERVL -226 238 222 2205 127 3 0 chr3 51103445 51103744 -166933414 + AluSx SINE Alu 1 300 -12 560 296 91 77 chr3 51103744 51103947 -166933211 - LTR16B LTR ERVL -242 222 5 32370 107 15 51 chr3 51105339 51111717 -166925441 + L1PA7 LINE L1 12 6153 -1 247 176 39 0 chr3 51111745 51111796 -166925362 - L2 LINE L2 -2 3311 3259 22 35 0 0 chr3 51112405 51112434 -166924724 + AT_rich Low_complexity Low_complexity 1 29 0 762 285 57 18 chr3 51112610 51112838 -166924320 + MIR SINE MIR 8 244 -18 2043 143 7 0 chr3 51112990 51113291 -166923867 + AluSx SINE Alu 1 303 -9 835 173 74 6 chr3 51113358 51113520 -166923638 - MER5A DNA MER1_type 0 189 17 662 161 14 166 chr3 51113523 51113734 -166923424 - MER58A DNA MER1_type 0 224 46 277 187 67 164 chr3 51113855 51113989 -166923169 + Cheshire DNA MER1_type 7 127 -2293 2064 121 40 0 chr3 51113996 51114293 -166922865 + AluSx SINE Alu 1 309 -3 842 203 45 45 chr3 51114296 51114518 -166922640 + Cheshire DNA MER1_type 70 291 -2129 346 317 55 47 chr3 51114717 51114935 -166922223 - MIR SINE MIR -1 261 37 2093 82 15 100 chr3 51115246 51115444 -166921714 - AluSx SINE Alu -9 303 143 2285 96 3 16 chr3 51115444 51115757 -166921401 - AluSc SINE Alu 0 309 1 2093 82 15 100 chr3 51115757 51115889 -166921269 - AluSx SINE Alu -169 143 1 3842 98 44 11 chr3 51116728 51117291 -166919867 + L1MA2 LINE L1 5722 6303 -1 227 314 76 0 chr3 51118479 51118597 -166918561 + L1ME LINE L1 5729 5855 -266 1940 141 0 13 chr3 51118622 51118928 -166918230 + AluSx SINE Alu 1 302 -10 2362 95 3 0 chr3 51119390 51119686 -166917472 - AluSx SINE Alu -15 297 1 287 258 0 0 chr3 51119687 51119749 -166917409 + L2 LINE L2 1424 1485 -1829 421 91 0 0 chr3 51119856 51119911 -166917247 + Alu SINE Alu 240 294 -17 1834 138 3 17 chr3 51120066 51120385 -166916773 + AluSx SINE Alu 1 315 0 25 31 0 0 chr3 51120496 51120528 -166916630 + AT_rich Low_complexity Low_complexity 1 32 0 2000 126 3 3 chr3 51120540 51120834 -166916324 - AluSq SINE Alu -19 294 1 21 0 0 0 chr3 51121094 51121115 -166916043 + AT_rich Low_complexity Low_complexity 1 21 0 703 200 22 76 chr3 51121410 51121454 -166915704 + MER5B DNA MER1_type 1 46 -132 2361 56 42 0 chr3 51121454 51121742 -166915416 - AluY SINE Alu -11 300 1 703 200 22 76 chr3 51121742 51121882 -166915276 + MER5B DNA MER1_type 46 175 -3 2082 128 0 0 chr3 51121904 51122194 -166914964 - AluSx SINE Alu -21 291 2 432 195 0 23 chr3 51122423 51122510 -166914648 + AluJo SINE Alu 82 166 -146 898 210 47 67 chr3 51122610 51122711 -166914447 - MLT1C LTR MaLR -173 294 192 2470 76 0 3 chr3 51122711 51123014 -166914144 - AluY SINE Alu -9 302 1 898 210 47 67 chr3 51123014 51123029 -166914129 - MLT1C LTR MaLR -275 192 178 2023 95 25 11 chr3 51123029 51123313 -166913845 - AluSp SINE Alu -24 289 2 1829 156 7 0 chr3 51123320 51123596 -166913562 - AluSx SINE Alu -32 280 3 898 210 47 67 chr3 51123596 51123770 -166913388 - MLT1C LTR MaLR -295 172 1 2014 135 0 10 chr3 51123995 51124298 -166912860 - AluJb SINE Alu -12 300 1 375 316 90 0 chr3 51124429 51124584 -166912574 + MIR SINE MIR 50 218 -44 1950 139 3 14 chr3 51124585 51124911 -166912247 + AluSx SINE Alu 1 323 0 207 175 50 0 chr3 51124929 51124969 -166912189 + MIR SINE MIR 210 251 -11 1535 158 29 55 chr3 51125002 51125313 -166911845 + AluJo SINE Alu 1 303 -9 24 0 0 0 chr3 51125335 51125359 -166911799 + AT_rich Low_complexity Low_complexity 1 24 0 2230 103 3 0 chr3 51125635 51125925 -166911233 + AluSq SINE Alu 3 293 -20 189 0 0 0 chr3 51126015 51126036 -166911122 + (A)n Simple_repeat Simple_repeat 1 21 0 1050 242 40 84 chr3 51126041 51126598 -166910560 + L1MC5 LINE L1 6689 7220 -741 189 0 0 0 chr3 51126609 51126630 -166910528 + (A)n Simple_repeat Simple_repeat 1 21 0 686 220 150 93 chr3 51126842 51127444 -166909714 + L1MC5 LINE L1 7297 7931 -30 216 0 0 0 chr3 51127570 51127594 -166909564 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1185 196 8 11 chr3 51128375 51128640 -166908518 + L1MA4A LINE L1 5821 6084 -219 1028 124 154 5 chr3 51129073 51129274 -166907884 + L1MB7 LINE L1 5938 6168 -16 2277 92 3 0 chr3 51129425 51129728 -166907430 + AluSx SINE Alu 1 304 -8 464 139 0 70 chr3 51129743 51129930 -166907228 + (GGGA)n Simple_repeat Simple_repeat 2 175 0 * 563 242 0 10 chr3 51129914 51130224 -166906934 + GA-rich Low_complexity Low_complexity 1 306 0 299 152 0 0 chr3 51130333 51130379 -166906779 - Alu SINE Alu -254 46 1 1645 110 121 8 chr3 51130576 51130840 -166906318 + AluSg1 SINE Alu 1 294 -15 390 294 0 0 chr3 51130840 51130925 -166906233 + L1MC4 LINE L1 6612 6699 -1343 4333 176 44 38 chr3 51130925 51132113 -166905045 - L1MB3 LINE L1 -8 6175 4969 1842 195 29 6 chr3 51132125 51132474 -166904684 - MLT1A1 LTR MaLR -8 357 1 1958 223 10 68 chr3 51132475 51132976 -166904182 - L1MB3 LINE L1 -1182 4964 4504 2414 69 0 3 chr3 51132976 51133282 -166903876 - AluY SINE Alu -6 305 1 1958 223 10 68 chr3 51133282 51133399 -166903759 - L1MB3 LINE L1 -1642 4504 4382 1215 86 38 5 chr3 51133503 51133689 -166903469 + AluY SINE Alu 115 306 -5 892 181 65 0 chr3 51133701 51133856 -166903302 + FRAM SINE Alu 1 165 -1 2115 78 4 0 chr3 51134501 51134782 -166902376 + AluSx SINE Alu 6 287 -25 1465 155 63 20 chr3 51135443 51136021 -166901137 + MER51A LTR ERV1 1 636 -4 929 162 67 62 chr3 51136208 51136418 -166900740 + MER58A DNA MER1_type 14 224 0 2046 108 20 3 chr3 51136659 51136954 -166900204 + AluSx SINE Alu 1 300 -12 808 226 0 11 chr3 51137050 51137231 -166899927 + FRAM SINE Alu 1 175 -1 1578 171 0 32 chr3 51137239 51137549 -166899609 + AluJb SINE Alu 1 300 -12 231 149 64 0 chr3 51137551 51137598 -166899560 + L1MA9 LINE L1 6251 6300 -12 * 729 152 95 13 chr3 51137566 51137735 -166899423 + L1MB2 LINE L1 5603 5786 -385 544 114 98 24 chr3 51137740 51137863 -166899295 + L1MB2 LINE L1 6038 6169 -2 1831 113 7 47 chr3 51137915 51138215 -166898943 + AluSq SINE Alu 9 296 -17 682 261 0 6 chr3 51138276 51138433 -166898725 - MER58B DNA MER1_type -15 326 171 1915 111 21 14 chr3 51138433 51138569 -166898589 + AluSq SINE Alu 1 135 -178 2104 101 3 3 chr3 51138569 51138865 -166898293 + AluSx SINE Alu 1 296 -16 1915 111 21 14 chr3 51138865 51139017 -166898141 + AluSq SINE Alu 135 291 -22 24 0 0 0 chr3 51139017 51139041 -166898117 + AT_rich Low_complexity Low_complexity 1 24 0 828 183 49 0 chr3 51139144 51139308 -166897850 + AluJo SINE Alu 1 172 -140 546 134 0 12 chr3 51139551 51139633 -166897525 - AluJ/FLAM SINE Alu -221 91 11 216 230 79 95 chr3 51139783 51139852 -166897306 + MIR3 SINE MIR 85 153 -55 1725 137 13 17 chr3 51139852 51140151 -166897007 - AluSx SINE Alu -13 299 2 216 230 79 95 chr3 51140151 51140207 -166896951 + MIR3 SINE MIR 153 208 0 381 259 58 48 chr3 51140281 51140470 -166896688 - L1ME3A LINE L1 -15 6155 5965 554 251 31 12 chr3 51140746 51140909 -166896249 + MER5A DNA MER1_type 18 183 -6 21 0 0 0 chr3 51141038 51141059 -166896099 + GC_rich Low_complexity Low_complexity 1 21 0 1574 135 114 14 chr3 51142406 51142695 -166894463 + MER4D LTR ERV1 1 318 -585 218 167 0 0 chr3 51142695 51142731 -166894427 + (CA)n Simple_repeat Simple_repeat 2 37 0 201 175 0 0 chr3 51142734 51142774 -166894384 + (TA)n Simple_repeat Simple_repeat 1 40 0 2095 101 11 0 chr3 51142774 51143061 -166894097 - AluSx SINE Alu -22 290 1 1883 153 19 6 chr3 51143061 51143374 -166893784 + MER4D LTR ERV1 311 627 -276 2811 147 65 62 chr3 51143374 51143973 -166893185 + LTR18B LTR ERVL 1 601 -13 1380 156 15 53 chr3 51144008 51144156 -166893002 + MER4E LTR ERV1 526 661 -118 1337 182 108 69 chr3 51144156 51144589 -166892569 + LTR7 LTR ERV1 1 450 0 1380 156 15 53 chr3 51144589 51144703 -166892455 + MER4E LTR ERV1 661 778 -1 246 210 0 48 chr3 51144764 51144826 -166892332 + AluJ/monomer SINE Alu 244 302 0 333 118 0 0 chr3 51144965 51145016 -166892142 - AluSp/q SINE Alu -7 296 246 967 42 0 8 chr3 51145032 51145151 -166892007 - AluSp SINE Alu -195 118 1 788 220 51 0 chr3 51145223 51145400 -166891758 - MER5A DNA MER1_type -1 188 3 4226 116 21 16 chr3 51145677 51146122 -166891036 + MER41B LTR ERV1 1 442 -193 1773 144 0 30 chr3 51146122 51146420 -166890738 + AluSx SINE Alu 1 289 -23 195 42 0 0 chr3 51146420 51146444 -166890714 + (GGAA)n Simple_repeat Simple_repeat 3 26 0 4226 116 21 16 chr3 51146444 51146629 -166890529 + MER41B LTR ERV1 441 635 0 258 297 0 0 chr3 51146700 51146764 -166890394 + Charlie4 DNA MER1_type 1898 1961 0 2396 73 0 0 chr3 51146854 51147155 -166890003 + AluY SINE Alu 1 301 -10 1002 149 6 18 chr3 51147503 51147671 -166889487 + FRAM SINE Alu 1 166 0 2066 112 14 0 chr3 51147708 51148004 -166889154 + AluSx SINE Alu 1 300 -12 233 275 9 55 chr3 51148124 51148233 -166888925 - L1MCa LINE L1 -3529 2897 2794 2038 132 3 0 chr3 51148282 51148593 -166888565 + AluSx SINE Alu 1 312 0 405 248 9 9 chr3 51148607 51148712 -166888446 + L1M4 LINE L1 3074 3178 -2968 1264 234 59 118 chr3 51149287 51149543 -166887615 - MER34 LTR ERV1 -16 526 319 1665 178 0 0 chr3 51149543 51149818 -166887340 - AluSx SINE Alu -37 275 1 1264 234 59 118 chr3 51149818 51150120 -166887038 - MER34 LTR ERV1 -223 319 1 398 213 0 13 chr3 51150315 51150390 -166886768 + L1MC4 LINE L1 5567 5640 -2168 1584 146 0 8 chr3 51150390 51150637 -166886521 - AluSx SINE Alu -67 245 1 332 108 12 96 chr3 51150673 51150756 -166886402 - L1MC3 LINE L1 -1139 6646 6571 * 337 182 57 34 chr3 51150693 51150781 -166886377 + L1MC4 LINE L1 6614 6703 -1339 302 239 0 88 chr3 51150762 51150875 -166886283 - L1MCa LINE L1 -4359 2067 1965 * 198 208 0 0 chr3 51150877 51150925 -166886233 + (CATATA)n Simple_repeat Simple_repeat 1 48 0 1711 161 3 3 chr3 51151504 51151802 -166885356 + AluJo SINE Alu 1 298 -14 410 310 113 56 chr3 51151861 51152145 -166885013 - L1M4 LINE L1 -1112 5034 4735 1908 130 44 0 chr3 51152396 51152689 -166884469 + AluSx SINE Alu 1 306 -6 337 269 32 0 chr3 51152725 51152818 -166884340 - L2 LINE L2 0 3313 3218 2238 77 7 3 chr3 51153036 51153333 -166883825 + AluSq SINE Alu 1 298 -15 842 158 0 43 chr3 51154325 51154464 -166882694 + FLAM_C SINE Alu 1 133 0 2233 76 17 7 chr3 51154554 51154856 -166882302 - AluY SINE Alu -6 305 1 2066 129 0 3 chr3 51154929 51155240 -166881918 - AluSx SINE Alu -2 310 1 2189 158 51 16 chr3 51155270 51155643 -166881515 - MSTB LTR MaLR 0 426 41 326 132 19 0 chr3 51155698 51155751 -166881407 - MSTB LTR MaLR -374 54 1 503 226 66 0 chr3 51155752 51155858 -166881300 - LTR16A1 LTR ERVL 0 457 345 1786 109 4 4 chr3 51155883 51156140 -166881018 - AluSx SINE Alu -35 277 21 7269 99 12 63 chr3 51156141 51156166 -166880992 - L1M1 LINE L1 -3956 3609 3584 2088 99 3 0 chr3 51156166 51156485 -166880673 - AluSp SINE Alu 0 320 1 7269 99 12 63 chr3 51156485 51157212 -166879946 - L1M1 LINE L1 -3981 3584 2943 2033 134 0 0 chr3 51157212 51157519 -166879639 - AluSx SINE Alu -5 307 1 7269 99 12 63 chr3 51157519 51158022 -166879136 - L1M1 LINE L1 -4622 2943 2416 21 0 0 0 chr3 51158022 51158043 -166879115 + AT_rich Low_complexity Low_complexity 1 21 0 1343 212 0 37 chr3 51158043 51158340 -166878818 - AluJb SINE Alu -26 286 1 8143 53 9 101 chr3 51158355 51159670 -166877488 - SVA Other Other 0 1386 223 811 126 17 0 chr3 51159670 51159789 -166877369 + MSTB LTR MaLR 306 426 0 1789 124 0 4 chr3 51159819 51160076 -166877082 + AluSq SINE Alu 1 256 -57 429 337 47 10 chr3 51160076 51160269 -166876889 + ERVL LTR ERVL 2104 2303 -3461 1738 178 3 3 chr3 51160434 51160738 -166876420 - AluJb SINE Alu -8 304 1 1949 323 48 29 chr3 51160739 51161438 -166875720 + ERVL LTR ERVL 2390 3113 -2651 2066 131 0 13 chr3 51161438 51161752 -166875406 + AluSx SINE Alu 3 312 0 1949 323 48 29 chr3 51161752 51161990 -166875168 + ERVL LTR ERVL 3113 3345 -2419 1344 96 5 10 chr3 51161992 51162189 -166874969 + Tigger7 DNA MER2_type 2290 2485 -2 822 109 48 36 chr3 51162189 51162354 -166874804 - L1MA8 LINE L1 -185 6106 5940 446 322 50 4 chr3 51162354 51162710 -166874448 + ERVL LTR ERVL 3333 3734 -2030 1512 114 4 4 chr3 51162737 51162965 -166874193 + AluJb SINE Alu 81 308 -4 279 304 98 12 chr3 51163109 51163325 -166873833 + L2 LINE L2 140 431 -2883 872 287 251 9 chr3 51163336 51163879 -166873279 + L2 LINE L2 969 1642 -1672 427 303 30 36 chr3 51163933 51164098 -166873060 + L1M4 LINE L1 3370 3533 -2613 474 212 32 115 chr3 51164150 51164212 -166872946 + L1MC5 LINE L1 7680 7746 -215 2034 128 0 26 chr3 51164212 51164525 -166872633 - AluSx SINE Alu -7 305 1 474 212 32 115 chr3 51164525 51164679 -166872479 + L1MC5 LINE L1 7746 7878 -83 1259 156 87 55 chr3 51164682 51164971 -166872187 - AluJb SINE Alu -14 298 1 2032 105 28 0 chr3 51164972 51165258 -166871900 - AluSp SINE Alu -19 294 1 920 198 6 0 chr3 51165275 51165432 -166871726 - FAM SINE Alu -17 158 1 319 264 8 58 chr3 51165436 51165557 -166871601 + L1MCa LINE L1 1948 2062 -4364 189 118 59 0 chr3 51165557 51165608 -166871550 + (TA)n Simple_repeat Simple_repeat 2 55 0 775 189 28 44 chr3 51165633 51165813 -166871345 - AluJo SINE Alu -16 296 120 199 75 0 50 chr3 51165813 51165853 -166871305 + (TTTC)n Simple_repeat Simple_repeat 1 38 0 812 141 0 40 chr3 51165853 51166002 -166871156 - FLAM_C SINE Alu 0 143 1 1685 176 10 0 chr3 51166159 51166455 -166870703 + AluSx SINE Alu 1 299 -13 1512 175 46 20 chr3 51166455 51166758 -166870400 + AluSx SINE Alu 1 311 -1 277 304 68 19 chr3 51166994 51167316 -166869842 - L1M4 LINE L1 -1327 4819 4482 1855 105 3 36 chr3 51167765 51168071 -166869087 + AluSx SINE Alu 1 296 -16 2363 40 40 0 chr3 51168072 51168371 -166868787 + AluY SINE Alu 1 311 0 25 0 0 0 chr3 51168371 51168396 -166868762 + AT_rich Low_complexity Low_complexity 1 25 0 416 103 0 0 chr3 51168499 51168557 -166868601 - Alu SINE Alu -255 63 6 1662 186 0 16 chr3 51168851 51169168 -166867990 + AluJo SINE Alu 1 312 0 1020 298 94 4 chr3 51169520 51169761 -166867397 - L2 LINE L2 -1 3312 3094 1668 146 10 21 chr3 51169761 51170049 -166867109 + AluJo SINE Alu 12 296 -16 1020 298 94 4 chr3 51170049 51170281 -166866877 - L2 LINE L2 -219 3094 2781 969 172 0 0 chr3 51170281 51170438 -166866720 - AluJb SINE Alu -19 293 137 3365 215 201 20 chr3 51170439 51171364 -166865794 - L2 LINE L2 -524 2790 1661 1725 145 57 3 chr3 51171364 51171660 -166865498 + AluSx SINE Alu 1 312 0 3365 215 201 20 chr3 51171660 51171760 -166865398 - L2 LINE L2 -1653 1661 1580 1584 225 90 48 chr3 51171760 51172137 -166865021 - MLT1D LTR MaLR 0 505 102 1956 113 0 33 chr3 51172137 51172437 -166864721 + AluSx SINE Alu 4 293 -19 1584 225 90 48 chr3 51172437 51172539 -166864619 - MLT1D LTR MaLR -403 102 6 1178 273 3 25 chr3 51172543 51172705 -166864453 - L2 LINE L2 -1729 1585 1432 2184 92 7 10 chr3 51172705 51173010 -166864148 + AluSp SINE Alu 1 304 -9 1178 273 3 25 chr3 51173010 51173162 -166863996 - L2 LINE L2 -1882 1432 1278 1868 137 0 4 chr3 51173267 51173545 -166863613 - AluSx SINE Alu -35 277 1 762 138 0 16 chr3 51173562 51173685 -166863473 - AluJo SINE Alu -18 294 174 674 159 0 0 chr3 51173676 51173783 -166863375 - AluJo SINE Alu -204 108 2 * 2096 123 0 0 chr3 51174087 51174387 -166862771 + AluSx SINE Alu 1 300 -12 1484 184 0 11 chr3 51174395 51174677 -166862481 + AluJo SINE Alu 1 279 -33 1630 106 28 9 chr3 51174677 51175055 -166862103 + MSTA LTR MaLR 2 428 0 523 245 156 54 chr3 51175074 51175413 -166861745 + L2 LINE L2 2699 3063 -250 2173 96 0 3 chr3 51175786 51176079 -166861079 + AluSq SINE Alu 1 292 -21 26 0 0 0 chr3 51176439 51176465 -166860693 + GC_rich Low_complexity Low_complexity 1 26 0 251 248 190 7 chr3 51177888 51178043 -166859115 + MIR SINE MIR 30 212 -50 180 281 47 0 chr3 51178117 51178181 -166858977 + MIR SINE MIR 146 212 -50 2045 131 0 0 chr3 51178183 51178489 -166858669 + AluSx SINE Alu 1 306 -6 1988 144 0 0 chr3 51178627 51178933 -166858225 - AluSx SINE Alu -6 306 1 1908 116 0 4 chr3 51179414 51179714 -166857444 + AluSx SINE Alu 9 307 0 25 51 0 0 chr3 51180254 51180293 -166856865 + AT_rich Low_complexity Low_complexity 1 39 0 308 167 37 0 chr3 51180295 51180349 -166856809 - MER66B LTR ERV1 -139 347 292 1483 142 0 63 chr3 51180442 51180710 -166856448 + AluJo SINE Alu 46 296 -16 2025 114 34 0 chr3 51181270 51181567 -166855591 + AluSc SINE Alu 1 307 -2 1240 173 90 47 chr3 51181718 51181996 -166855162 - AluJo SINE Alu -22 290 1 1530 217 98 0 chr3 51182739 51183136 -166854022 - L1ME3 LINE L1 -159 6003 5568 1885 118 14 7 chr3 51184016 51184303 -166852855 - AluSx SINE Alu -23 289 1 188 219 0 0 chr3 51184303 51184344 -166852814 + MIR SINE MIR 163 203 -59 1871 169 0 0 chr3 51184868 51185176 -166851982 + AluJb SINE Alu 1 308 -4 2346 80 0 0 chr3 51185305 51185616 -166851542 + AluY SINE Alu 1 311 0 222 287 219 46 chr3 51185926 51186173 -166850985 - L2 LINE L2 -675 2639 2436 2296 90 0 3 chr3 51186173 51186483 -166850675 - AluSx SINE Alu -3 309 1 222 287 219 46 chr3 51186483 51186650 -166850508 - L2 LINE L2 -878 2436 2153 397 303 133 24 chr3 51187730 51187941 -166849217 - L1M4 LINE L1 -2630 3516 3283 202 182 9 55 chr3 51188388 51188498 -166848660 + CT-rich Low_complexity Low_complexity 1 105 0 2404 80 0 0 chr3 51188954 51189254 -166847904 - AluSx SINE Alu -12 300 1 1581 160 3 11 chr3 51189765 51190052 -166847106 - AluJb SINE Alu -26 286 2 2199 87 0 34 chr3 51190063 51190385 -166846773 - AluY SINE Alu 0 311 1 327 78 0 0 chr3 51190613 51190664 -166846494 + (TTAG)n Simple_repeat Simple_repeat 2 52 0 1851 134 0 0 chr3 51190667 51190942 -166846216 - AluJb SINE Alu -35 277 3 21 57 0 0 chr3 51191101 51191136 -166846022 + AT_rich Low_complexity Low_complexity 1 35 0 1943 141 0 0 chr3 51191168 51191480 -166845678 - AluSx SINE Alu 0 312 1 3943 133 111 106 chr3 51191526 51192112 -166845046 - L1MC3 LINE L1 -1 7784 7202 1929 109 41 24 chr3 51192112 51192406 -166844752 - AluSx SINE Alu -9 303 5 309 210 25 25 chr3 51192408 51192489 -166844669 - MLT1F1 LTR MaLR -441 126 46 3943 133 111 106 chr3 51192489 51192796 -166844362 - L1MC3 LINE L1 -583 7202 6804 2133 114 0 3 chr3 51192836 51193152 -166844006 - AluSc SINE Alu 0 315 1 2040 96 0 7 chr3 51193167 51193448 -166843710 - AluSg SINE Alu -26 284 6 2158 84 3 53 chr3 51193452 51193772 -166843386 - AluSp SINE Alu -9 304 1 1612 143 52 18 chr3 51193772 51194058 -166843100 - AluJb SINE Alu -16 296 1 31 76 0 0 chr3 51194117 51194183 -166842975 + AT_rich Low_complexity Low_complexity 1 66 0 786 192 133 30 chr3 51195147 51195350 -166841808 - LTR16C LTR ERVL 0 491 268 241 271 172 7 chr3 51195386 51195537 -166841621 - LTR16C LTR ERVL -315 176 1 1616 93 9 4 chr3 51195825 51196050 -166841108 + AluSq SINE Alu 1 226 -87 26 50 0 0 chr3 51196257 51196297 -166840861 + GC_rich Low_complexity Low_complexity 1 40 0 2103 204 124 51 chr3 51197001 51197801 -166839357 + L1MC4 LINE L1 7185 8042 0 1267 203 67 47 chr3 51197825 51198113 -166839045 + L1MD2 LINE L1 5993 6291 -68 2123 118 0 0 chr3 51198113 51198409 -166838749 - AluSq SINE Alu -17 296 1 1267 203 67 47 chr3 51198409 51198480 -166838678 + L1MD2 LINE L1 6291 6359 0 357 225 135 9 chr3 51198684 51198795 -166838363 - MIR3 SINE MIR -17 191 67 423 236 80 80 chr3 51199465 51199677 -166837481 - LTR16C LTR ERVL -4 487 276 1444 201 0 30 chr3 51199745 51200049 -166837109 + AluJo SINE Alu 4 298 -14 286 217 14 29 chr3 51200117 51200186 -166836972 + L2 LINE L2 3228 3295 -18 1987 109 12 44 chr3 51200198 51200518 -166836640 + AluSx SINE Alu 3 312 0 2016 119 0 10 chr3 51200524 51200826 -166836332 + AluSx SINE Alu 1 299 -13 837 168 0 0 chr3 51200906 51201037 -166836121 - FLAM_C SINE Alu -2 131 1 1166 177 0 5 chr3 51201094 51201309 -166835849 + AluJo SINE Alu 86 299 -13 518 248 133 68 chr3 51201318 51201399 -166835759 - L2 LINE L2 -94 3219 3145 2237 108 0 3 chr3 51201399 51201704 -166835454 + AluSx SINE Alu 1 304 -8 518 248 133 68 chr3 51201704 51201945 -166835213 - L2 LINE L2 -168 3145 2876 280 345 23 0 chr3 51201964 51202051 -166835107 - L2 LINE L2 -568 2746 2658 2341 39 3 0 chr3 51202279 51202561 -166834597 + AluY SINE Alu 1 283 -28 197 83 28 0 chr3 51202561 51202597 -166834561 + (CAAAC)n Simple_repeat Simple_repeat 2 38 0 1155 154 47 37 chr3 51202602 51202816 -166834342 + AluJb SINE Alu 85 300 -12 2230 102 0 3 chr3 51203080 51203383 -166833775 - AluSx SINE Alu -10 302 1 1357 159 30 60 chr3 51203437 51203738 -166833420 - AluJo SINE Alu -16 296 5 469 324 44 11 chr3 51205034 51205216 -166831942 - MIR SINE MIR -52 210 23 980 217 50 0 chr3 51205223 51205421 -166831737 + MER58A DNA MER1_type 17 224 0 1839 167 0 0 chr3 51205535 51205834 -166831324 + AluSx SINE Alu 1 299 -13 671 302 42 14 chr3 51205918 51206179 -166830979 + MLT1H1 LTR MaLR 18 325 -270 872 109 15 7 chr3 51206317 51206454 -166830704 + AluJo SINE Alu 4 141 -171 1986 82 0 82 chr3 51206903 51207232 -166829926 + AluY SINE Alu 2 305 0 984 170 0 6 chr3 51207232 51207414 -166829744 + AluSg/x SINE Alu 130 310 0 1317 200 4 0 chr3 51207417 51207652 -166829506 - MER46A DNA MER2_type 0 236 1 986 152 0 6 chr3 51207814 51207979 -166829179 - AluSg/x SINE Alu -12 298 135 40 0 0 0 chr3 51207991 51208031 -166829127 + AT_rich Low_complexity Low_complexity 1 40 0 2788 117 9 37 chr3 51208031 51208494 -166828664 + L1PA15 LINE L1 5716 6165 0 273 311 148 0 chr3 51208878 51209000 -166828158 - MIR SINE MIR -35 227 88 211 268 0 0 chr3 51210144 51210200 -166826958 + (CA)n Simple_repeat Simple_repeat 1 56 0 2030 127 7 0 chr3 51211452 51211744 -166825414 - AluSq SINE Alu -15 298 5 256 300 100 15 chr3 51212129 51212259 -166824899 - MIR SINE MIR -81 181 41 1764 180 0 3 chr3 51212446 51212752 -166824406 + AluJo SINE Alu 2 306 -6 282 208 117 0 chr3 51212777 51212854 -166824304 + L1ME4a LINE L1 5384 5469 -652 283 141 0 24 chr3 51212872 51212957 -166824201 + (TTA)n Simple_repeat Simple_repeat 2 84 0 1969 124 3 0 chr3 51213023 51213314 -166823844 + AluSx SINE Alu 1 292 -20 261 266 67 73 chr3 51213314 51213641 -166823517 + L1ME4a LINE L1 5626 5950 -171 1383 170 80 21 chr3 51213830 51214118 -166823040 - AluJb SINE Alu -7 305 1 418 183 203 92 chr3 51214252 51214405 -166822753 + MIR SINE MIR 81 250 -12 230 170 0 43 chr3 51214560 51214607 -166822551 + L2 LINE L2 3219 3263 -50 1494 158 14 43 chr3 51214718 51214996 -166822162 + AluJo SINE Alu 9 278 -34 1862 108 45 3 chr3 51214996 51215284 -166821874 - AluSx SINE Alu -12 300 1 1884 163 0 0 chr3 51216835 51217130 -166820028 - AluSx SINE Alu -17 295 1 1705 181 0 0 chr3 51217244 51217543 -166819615 + AluJb SINE Alu 1 299 -13 875 195 6 6 chr3 51218184 51218343 -166818815 + FRAM SINE Alu 1 159 -7 1099 186 5 0 chr3 51218800 51218993 -166818165 + AluJo SINE Alu 87 280 -32 189 0 0 0 chr3 51218993 51219014 -166818144 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 303 262 196 0 chr3 51219018 51219125 -166818033 + MIR SINE MIR 84 211 -51 345 278 155 40 chr3 51219238 51219515 -166817643 + L2 LINE L2 595 903 -2411 1817 144 7 3 chr3 51219714 51219998 -166817160 - AluJb SINE Alu -27 285 1 443 339 11 6 chr3 51220518 51220692 -166816466 + L2 LINE L2 1909 2083 -1231 193 269 176 42 chr3 51220718 51220837 -166816321 + L2 LINE L2 2176 2310 -1004 221 357 28 42 chr3 51221015 51221158 -166816000 + L2 LINE L2 2618 2758 -556 560 237 0 83 chr3 51221617 51221773 -166815385 + L2 LINE L2 3170 3312 -1 1168 137 6 0 chr3 51222156 51222331 -166814827 - AluJo SINE Alu -10 302 127 702 191 8 15 chr3 51222398 51222529 -166814629 - AluJo SINE Alu -176 136 7 270 295 23 62 chr3 51222725 51222854 -166814304 + L2 LINE L2 3150 3273 -40 1151 145 50 117 chr3 51223743 51223911 -166813247 - AluJo SINE Alu -23 289 146 2276 80 0 7 chr3 51223911 51224210 -166812948 + AluSx SINE Alu 1 297 -15 1151 145 50 117 chr3 51224210 51224323 -166812835 - AluJo SINE Alu -166 146 27 4308 192 65 79 chr3 51224342 51224775 -166812383 - L1MB8 LINE L1 -16 6162 5724 2039 131 0 0 chr3 51224775 51225066 -166812092 - AluSx SINE Alu -16 296 6 4308 192 65 79 chr3 51225066 51225724 -166811434 - L1MB8 LINE L1 -454 5724 5058 342 125 0 0 chr3 51225724 51225772 -166811386 - MER66B LTR ERV1 -141 345 298 4308 192 65 79 chr3 51225772 51226088 -166811070 - L1MB8 LINE L1 -1120 5058 4739 2171 94 3 7 chr3 51226088 51226385 -166810773 - AluSx SINE Alu -16 296 1 4308 192 65 79 chr3 51226385 51227195 -166809963 - L1MB8 LINE L1 -1439 4739 3961 2004 98 11 0 chr3 51227195 51227494 -166809664 - AluSx SINE Alu 0 307 6 1036 88 0 0 chr3 51227498 51227634 -166809524 - AluSq/x SINE Alu -177 136 1 629 146 57 0 chr3 51227639 51227762 -166809396 - L1MB8 LINE L1 -2176 3970 3841 194 0 39 0 chr3 51227766 51227792 -166809366 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1933 138 3 0 chr3 51227795 51228078 -166809080 - AluSx SINE Alu -28 284 1 340 323 0 37 chr3 51228641 51228863 -166808295 + CT-rich Low_complexity Low_complexity 1 213 0 37 39 0 0 chr3 51229305 51229356 -166807802 + AT_rich Low_complexity Low_complexity 1 51 0 1850 166 0 3 chr3 51229561 51229869 -166807289 - AluJb SINE Alu -5 307 1 249 261 80 0 chr3 51229980 51230068 -166807090 + MIR SINE MIR 21 115 -147 2162 97 0 13 chr3 51230660 51230958 -166806200 + AluSx SINE Alu 1 294 -18 21 0 0 0 chr3 51232324 51232345 -166804813 + AT_rich Low_complexity Low_complexity 1 21 0 1636 152 46 30 chr3 51232608 51232910 -166804248 - AluJo SINE Alu -5 307 1 281 308 11 0 chr3 51233138 51233229 -166803929 - HAL1b LINE L1 -56 1292 1201 253 268 147 52 chr3 51233331 51233562 -166803596 - L1ME3A LINE L1 0 6170 5918 * 268 231 51 43 chr3 51233550 51233667 -166803491 - L1MC5 LINE L1 -430 7531 7414 245 147 0 0 chr3 51233704 51233738 -166803420 - Alu SINE Alu -260 42 9 1804 150 7 10 chr3 51233966 51234272 -166802886 - AluJb SINE Alu -7 305 1 1265 192 126 4 chr3 51234318 51234579 -166802579 - AluJb SINE Alu -8 294 2 1986 253 130 76 chr3 51234587 51234849 -166802309 - HAL1 LINE L1 -871 1636 1389 192 77 0 0 chr3 51234849 51234875 -166802283 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1986 253 130 76 chr3 51234875 51236062 -166801096 - HAL1 LINE L1 -1118 1389 102 1597 109 0 0 chr3 51236062 51236283 -166800875 - AluSg/x SINE Alu -9 301 81 1986 253 130 76 chr3 51236283 51236337 -166800821 - HAL1 LINE L1 -2405 102 52 763 187 0 0 chr3 51236441 51236575 -166800583 - AluJo SINE Alu -177 135 2 782 166 99 0 chr3 51237635 51237786 -166799372 + MER5A DNA MER1_type 1 166 -23 314 254 112 52 chr3 51237667 51237801 -166799357 - MER5A DNA MER1_type -24 165 24 * 187 243 257 0 chr3 51239440 51239514 -166797644 - L2 LINE L2 -19 3253 3161 236 226 57 0 chr3 51239577 51239630 -166797528 - MIR SINE MIR -3 259 204 250 264 70 47 chr3 51239755 51239884 -166797274 - L2 LINE L2 -463 2851 2720 2132 129 3 0 chr3 51240316 51240627 -166796531 - AluSx SINE Alu 0 312 1 301 195 87 3 chr3 51240627 51240705 -166796453 - L1MD2 LINE L1 -64 6122 6019 4521 154 6 27 chr3 51240766 51240880 -166796278 - L1MB8 LINE L1 -5 6173 6058 1654 159 7 14 chr3 51240880 51241170 -166795988 - AluJo SINE Alu -24 288 1 4521 154 6 27 chr3 51241170 51241881 -166795277 - L1MB8 LINE L1 -120 6058 5365 27 29 0 0 chr3 51241940 51241974 -166795184 + AT_rich Low_complexity Low_complexity 1 34 0 198 287 198 0 chr3 51242648 51242749 -166794409 + L2 LINE L2 3151 3271 -1 311 273 91 75 chr3 51242780 51242967 -166794191 + MLT1L LTR MaLR 2 191 -424 192 250 107 0 chr3 51243576 51243632 -166793526 + MIR SINE MIR 126 187 -75 22 0 0 0 chr3 51243726 51243748 -166793410 + AT_rich Low_complexity Low_complexity 1 22 0 2055 106 0 20 chr3 51243748 51244051 -166793107 - AluSq SINE Alu -16 297 1 224 328 15 0 chr3 51244051 51244118 -166793040 - L3 LINE CR1 -24 1553 1486 537 226 0 22 chr3 51244190 51244327 -166792831 - MER104 DNA Tc2 -29 151 18 237 284 0 15 chr3 51244412 51244479 -166792679 + (TA)n Simple_repeat Simple_repeat 1 66 0 1180 181 5 9 chr3 51244503 51244719 -166792439 - AluJb SINE Alu -13 299 85 240 269 29 67 chr3 51245219 51245323 -166791835 + MIR SINE MIR 115 214 -48 412 276 136 31 chr3 51245541 51245827 -166791331 - L2 LINE L2 -71 3242 2927 2146 102 0 10 chr3 51246033 51246338 -166790820 - AluSq SINE Alu -11 302 1 682 150 25 0 chr3 51246504 51246624 -166790534 - L1MD3 LINE L1 -1 7994 7872 1412 205 0 30 chr3 51246744 51247047 -166790111 + AluJo SINE Alu 4 297 -15 345 26 0 0 chr3 51247160 51247199 -166789959 - AluJb SINE Alu -202 100 62 5199 168 8 46 chr3 51247199 51247620 -166789538 - L1P4 LINE L1 -443 5722 5286 2021 112 0 3 chr3 51247620 51247905 -166789253 - AluSx SINE Alu -11 301 18 5199 168 8 46 chr3 51247905 51247995 -166789163 - L1P4 LINE L1 -879 5286 5194 2255 97 0 0 chr3 51247995 51248304 -166788854 - AluSq SINE Alu -4 309 1 5199 168 8 46 chr3 51248304 51249063 -166788095 - L1P4 LINE L1 -971 5194 4527 1984 146 3 0 chr3 51249063 51249364 -166787794 - AluSx SINE Alu -8 304 3 5199 168 8 46 chr3 51249364 51249679 -166787479 - L1P4 LINE L1 -1638 4527 4201 1451 204 72 108 chr3 51250015 51250250 -166786908 + MLT1E2 LTR MaLR 1 243 -383 2403 78 0 0 chr3 51250250 51250559 -166786599 + AluY SINE Alu 1 309 -2 1451 204 72 108 chr3 51250559 51250992 -166786166 + MLT1E2 LTR MaLR 243 626 0 2047 117 7 7 chr3 51251250 51251559 -166785599 - AluSx SINE Alu -3 309 1 300 330 43 26 chr3 51251770 51251885 -166785273 - MIR3 SINE MIR -11 197 81 1595 175 3 7 chr3 51252662 51252954 -166784204 - AluJb SINE Alu -21 291 1 227 247 10 15 chr3 51253231 51253328 -166783830 - L2 LINE L2 -2 3270 3133 181 256 0 0 chr3 51253999 51254038 -166783120 - MIR3 SINE MIR -45 163 125 1829 131 14 3 chr3 51254095 51254400 -166782758 + AluSx SINE Alu 1 308 0 338 308 113 71 chr3 51255124 51255364 -166781794 - HAL1b LINE L1 -631 717 468 1816 130 18 4 chr3 51255371 51255692 -166781466 + AluJb SINE Alu 1 325 0 384 254 30 101 chr3 51255807 51255976 -166781182 - HAL1 LINE L1 -1123 1384 1228 685 178 51 17 chr3 51256097 51256215 -166780943 + FLAM_A SINE Alu 1 122 -11 1116 170 74 48 chr3 51256782 51256949 -166780209 + MER46A DNA MER2_type 1 177 -2554 2009 128 0 3 chr3 51256949 51257247 -166779911 - AluSx SINE Alu -15 297 1 1116 170 74 48 chr3 51257247 51257309 -166779849 + MER46A DNA MER2_type 177 236 0 338 217 85 85 chr3 51257485 51257614 -166779544 - Charlie1 DNA MER1_type 0 2761 2633 701 245 196 0 chr3 51257618 51257802 -166779356 - Charlie1 DNA MER1_type -2534 227 8 2009 128 3 34 chr3 51258074 51258395 -166778763 - AluSx SINE Alu -1 311 1 2452 287 169 18 chr3 51260163 51261695 -166775463 + L2 LINE L2 1546 3313 0 205 328 145 8 chr3 51261705 51261836 -166775322 - MIR SINE MIR -94 168 20 2047 113 16 13 chr3 51262182 51262492 -166774666 + AluSx SINE Alu 1 311 -1 228 133 0 67 chr3 51263837 51263882 -166773276 + (TCCC)n Simple_repeat Simple_repeat 4 45 0 693 66 0 0 chr3 51264460 51264551 -166772607 + (TTATG)n Simple_repeat Simple_repeat 2 92 0 786 115 0 0 chr3 51264559 51264663 -166772495 - AluJb SINE Alu -207 105 2 326 154 0 0 chr3 51265425 51265490 -166771668 + C-rich Low_complexity Low_complexity 2 66 0 1856 137 10 7 chr3 51265490 51265782 -166771376 - AluSx SINE Alu -19 293 1 1265 226 17 17 chr3 51266152 51266448 -166770710 - AluJo SINE Alu -15 297 2 992 238 38 85 chr3 51266505 51266929 -166770229 - MLT2D LTR ERVL -10 404 1 292 297 145 0 chr3 51266946 51267084 -166770074 - MIR SINE MIR -12 250 93 312 27 0 0 chr3 51267489 51267526 -166769632 + (CAT)n Simple_repeat Simple_repeat 2 38 0 1866 196 25 0 chr3 51267544 51267897 -166769261 + MLT1A1 LTR MaLR 2 363 -2 911 239 56 46 chr3 51267902 51268019 -166769139 - MER20B DNA MER1_type 0 783 669 2097 125 0 3 chr3 51268019 51268331 -166768827 - AluSx SINE Alu -1 311 1 911 239 56 46 chr3 51268331 51268518 -166768640 - MER20B DNA MER1_type -114 669 476 318 295 53 0 chr3 51268875 51269047 -166768111 - L1MC4a LINE L1 -296 5825 5705 379 248 0 91 chr3 51269776 51269974 -166767184 + CT-rich Low_complexity Low_complexity 1 180 0 1625 131 3 47 chr3 51271864 51272161 -166764997 + AluJo SINE Alu 10 293 -19 2189 93 3 7 chr3 51272445 51272745 -166764413 - AluSq SINE Alu -14 299 1 250 301 110 29 chr3 51272787 51272960 -166764198 - MLT1I LTR MaLR -26 383 197 945 218 27 9 chr3 51273326 51273546 -166763612 - MER58A DNA MER1_type 0 224 1 2203 101 0 0 chr3 51273767 51274063 -166763095 - AluSx SINE Alu -16 296 1 1669 160 108 1 chr3 51274255 51274642 -166762516 - MER61D LTR ERV1 0 501 25 239 186 0 34 chr3 51274613 51274672 -166762486 - LTR28 LTR ERV1 -963 57 1 * 793 184 15 97 chr3 51274728 51274934 -166762224 - L1MB7 LINE L1 -9 6175 5987 2004 128 0 23 chr3 51274947 51275252 -166761906 - AluSx SINE Alu -14 298 1 545 133 0 0 chr3 51275404 51275479 -166761679 + AluJo SINE Alu 14 88 -224 17618 86 11 25 chr3 51275484 51276727 -166760431 + L1P LINE L1 4 1199 -4947 2353 73 0 7 chr3 51276727 51277030 -166760128 - AluSp SINE Alu -11 302 2 17618 86 11 25 chr3 51277030 51278244 -166758914 + L1P LINE L1 1199 2428 -3718 358 164 16 0 chr3 51278244 51278305 -166758853 + AluJo SINE Alu 73 134 -168 21 71 0 0 chr3 51278376 51278418 -166758740 + AT_rich Low_complexity Low_complexity 1 42 0 2196 99 7 0 chr3 51279011 51279313 -166757845 + AluSc SINE Alu 1 304 -5 893 225 183 39 chr3 51279527 51279887 -166757271 - MLT1J LTR MaLR 0 511 100 1832 154 3 7 chr3 51279986 51280292 -166756866 + AluJb SINE Alu 1 305 -7 574 268 118 18 chr3 51280800 51281028 -166756130 + MIR SINE MIR 12 262 0 312 204 0 0 chr3 51281138 51281192 -166755966 + MER66A LTR ERV1 284 337 -141 3674 60 2 0 chr3 51281421 51281872 -166755286 + L1PA5 LINE L1 5684 6135 -19 342 0 0 0 chr3 51281872 51281910 -166755248 + (TA)n Simple_repeat Simple_repeat 1 38 0 276 298 111 75 chr3 51282701 51282953 -166754205 - L2 LINE L2 -85 3187 2927 1125 172 88 9 chr3 51282957 51283172 -166753986 + LTR8 LTR ERV1 26 257 -434 2256 81 0 0 chr3 51283177 51283472 -166753686 - AluY SINE Alu -16 295 1 1135 123 25 19 chr3 51283474 51283720 -166753438 - MER4-int LTR ERV1 -4094 2504 1402 853 56 0 0 chr3 51283913 51284021 -166753137 - AluSg/x SINE Alu -6 304 197 532 80 273 0 chr3 51284021 51284109 -166753049 + AluSq SINE Alu 76 187 -126 228 125 56 28 chr3 51284212 51284284 -166752874 + CT-rich Low_complexity Low_complexity 4 77 0 1701 147 4 4 chr3 51284286 51284559 -166752599 - AluJb SINE Alu -39 273 1 2143 91 27 3 chr3 51284562 51284860 -166752298 - AluY SINE Alu -6 305 1 871 178 24 18 chr3 51284860 51285029 -166752129 - FRAM SINE Alu -15 161 1 270 348 0 0 chr3 51285188 51285280 -166751878 + L2 LINE L2 3143 3234 -38 775 151 7 14 chr3 51285432 51285571 -166751587 + FLAM_C SINE Alu 6 143 0 1406 185 21 14 chr3 51286334 51286652 -166750506 + AluJo SINE Alu 12 331 0 2143 109 13 0 chr3 51286654 51286957 -166750201 - AluSx SINE Alu -3 309 3 345 295 7 58 chr3 51287746 51287885 -166749273 + MIR3 SINE MIR 13 144 -64 23 0 0 0 chr3 51288414 51288437 -166748721 + AT_rich Low_complexity Low_complexity 1 23 0 790 178 0 15 chr3 51288585 51288720 -166748438 + FLAM_C SINE Alu 1 133 0 432 0 0 0 chr3 51288857 51288905 -166748253 + (TG)n Simple_repeat Simple_repeat 2 49 0 2108 103 3 3 chr3 51290328 51290628 -166746530 + AluSc SINE Alu 1 300 -9 23 33 0 0 chr3 51291116 51291146 -166746012 + AT_rich Low_complexity Low_complexity 1 30 0 1605 192 66 46 chr3 51291461 51291834 -166745324 - MLT1C LTR MaLR 0 467 87 2154 107 16 3 chr3 51291834 51292142 -166745016 + AluSx SINE Alu 1 312 0 1605 192 66 46 chr3 51292142 51292225 -166744933 - MLT1C LTR MaLR -380 87 7 399 248 109 61 chr3 51292824 51293119 -166744039 - L1MC4 LINE L1 -924 6884 6618 309 281 171 7 chr3 51293420 51293566 -166743592 + MIR SINE MIR 81 250 -12 543 288 106 13 chr3 51294282 51294508 -166742650 - MIR SINE MIR -1 261 15 21 71 0 0 chr3 51294660 51294702 -166742456 + AT_rich Low_complexity Low_complexity 1 42 0 325 290 62 48 chr3 51294980 51295125 -166742033 - L1ME4a LINE L1 0 6121 5975 2043 124 3 3 chr3 51295183 51295481 -166741677 + AluSx SINE Alu 1 298 -14 321 128 0 0 chr3 51296398 51296445 -166740713 - MER21A LTR ERV1 -358 573 527 268 135 0 0 chr3 51296446 51296483 -166740675 - MER21B LTR ERV1 -497 366 330 1534 209 0 3 chr3 51296530 51296836 -166740322 - AluJo SINE Alu -7 305 1 255 161 0 0 chr3 51297972 51298028 -166739130 + (CA)n Simple_repeat Simple_repeat 2 57 0 1172 167 19 19 chr3 51298125 51298340 -166738818 + MER20 DNA MER1_type 5 219 0 205 287 213 16 chr3 51302465 51302587 -166734571 + MER5A DNA MER1_type 44 189 0 191 258 39 109 chr3 51302826 51302954 -166734204 + MIR SINE MIR 36 154 -108 1556 183 24 3 chr3 51303101 51303396 -166733762 + AluJb SINE Alu 1 301 -11 2113 135 0 0 chr3 51304141 51304453 -166732705 - AluSx SINE Alu 0 312 1 207 0 0 0 chr3 51304453 51304476 -166732682 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 654 148 0 10 chr3 51304476 51304577 -166732581 - AluJb SINE Alu -30 282 183 877 142 0 0 chr3 51304577 51304711 -166732447 - FLAM_C SINE Alu -9 134 1 879 203 155 81 chr3 51304943 51305468 -166731690 - MER34C LTR ERV1 0 542 1 838 190 75 30 chr3 51305639 51305839 -166731319 + MER3 DNA MER1_type 1 209 0 2310 206 82 65 chr3 51306417 51306848 -166730310 + L1MC4 LINE L1 6856 7278 -530 1981 110 7 13 chr3 51306848 51307147 -166730011 + AluSx SINE Alu 1 297 -15 2118 129 3 0 chr3 51307157 51307468 -166729690 + AluJo SINE Alu 1 312 0 2310 206 82 65 chr3 51307468 51307941 -166729217 + L1MC4 LINE L1 7286 7790 -18 27 0 0 0 chr3 51308024 51308051 -166729107 + AT_rich Low_complexity Low_complexity 1 27 0 189 0 0 0 chr3 51308552 51308573 -166728585 + (T)n Simple_repeat Simple_repeat 1 21 0 2009 87 0 54 chr3 51308644 51308984 -166728174 + AluY SINE Alu 3 326 0 805 215 159 25 chr3 51310552 51310878 -166726280 - L1ME2 LINE L1 0 6164 5795 24 0 0 0 chr3 51310989 51311013 -166726145 + AT_rich Low_complexity Low_complexity 1 24 0 1150 166 0 39 chr3 51311353 51311582 -166725576 - AluJo SINE Alu -8 304 85 447 229 195 0 chr3 51311968 51312086 -166725072 + MER5A DNA MER1_type 42 182 -7 208 176 29 0 chr3 51312231 51312299 -166724859 + (TA)n Simple_repeat Simple_repeat 2 71 0 463 278 133 17 chr3 51313013 51313192 -166723966 - MIR SINE MIR -55 207 8 970 108 22 103 chr3 51313192 51313269 -166723889 + MER5A DNA MER1_type 2 84 -105 2309 81 0 0 chr3 51313269 51313567 -166723591 + AluSg1 SINE Alu 1 298 -11 970 108 22 103 chr3 51313567 51313674 -166723484 + MER5A DNA MER1_type 84 171 -18 353 270 131 7 chr3 51314360 51314497 -166722661 - MIR SINE MIR -49 213 60 236 217 67 0 chr3 51314556 51314616 -166722542 - MIR SINE MIR -45 217 154 289 150 115 115 chr3 51316209 51316290 -166720868 + MER2 DNA MER2_type 98 181 -164 1555 149 12 44 chr3 51316290 51316611 -166720547 - AluJb SINE Alu -1 311 1 289 150 115 115 chr3 51316611 51316642 -166720516 + MER2 DNA MER2_type 180 210 -135 223 256 56 11 chr3 51316806 51316896 -166720262 + L2 LINE L2 2196 2289 -1025 384 317 197 8 chr3 51317007 51317408 -166719750 + L2 LINE L2 2498 2974 -340 744 183 0 8 chr3 51317435 51317566 -166719592 - FLAM_A SINE Alu -3 130 1 295 246 15 0 chr3 51317724 51317789 -166719369 - MIR SINE MIR 0 262 197 211 262 0 0 chr3 51318202 51318244 -166718914 + C-rich Low_complexity Low_complexity 3 44 0 820 268 7 15 chr3 51318309 51318578 -166718580 - AluJb SINE Alu -43 269 3 262 80 9 115 chr3 51318855 51318968 -166718190 + (CCCTA)n Simple_repeat Simple_repeat 2 102 0 1821 128 36 4 chr3 51318984 51319258 -166717900 - AluSq SINE Alu -30 283 1 866 139 0 0 chr3 51319268 51319397 -166717761 - FLAM_C SINE Alu -4 129 1 2598 171 62 30 chr3 51319400 51319937 -166717221 - L1MB5 LINE L1 -36 6138 5585 244 302 87 16 chr3 51320006 51320132 -166717026 - L1ME LINE L1 -453 5668 5534 2055 130 0 0 chr3 51320255 51320556 -166716602 - AluSx SINE Alu -11 301 1 197 297 93 0 chr3 51321369 51321487 -166715671 + MIR3 SINE MIR 9 137 -71 344 293 0 0 chr3 51321599 51321681 -166715477 - L2 LINE L2 -6 3307 3226 193 297 51 51 chr3 51321751 51321869 -166715289 + MIR3 SINE MIR 60 177 -31 231 154 77 0 chr3 51322545 51322597 -166714561 + Charlie8 DNA MER1_type 87 142 -2275 300 315 8 54 chr3 51322748 51322878 -166714280 - MIR SINE MIR -61 147 24 1961 98 0 7 chr3 51323356 51323630 -166713528 - AluSc SINE Alu -6 303 32 2043 102 0 26 chr3 51323632 51323935 -166713223 - AluSx SINE Alu -17 295 1 294 355 127 47 chr3 51324617 51325003 -166712155 - L2 LINE L2 -29 3243 2827 232 224 37 84 chr3 51325029 51325136 -166712022 - MLT1J LTR MaLR -31 480 379 549 279 55 12 chr3 51325247 51325412 -166711746 - MLT1J LTR MaLR -333 178 7 525 205 0 27 chr3 51325494 51325606 -166711552 + FLAM_C SINE Alu 33 141 -2 2151 88 0 19 chr3 51326083 51326390 -166710768 - AluSc SINE Alu -8 301 1 2415 63 0 0 chr3 51326801 51327103 -166710055 - AluY SINE Alu -9 302 1 2078 122 0 0 chr3 51327366 51327660 -166709498 - AluSx SINE Alu -16 296 3 1616 165 18 0 chr3 51329420 51329699 -166707459 + AluJo SINE Alu 16 299 -13 224 328 16 0 chr3 51330383 51330447 -166706711 + L2 LINE L2 3145 3209 -63 267 241 0 0 chr3 51330472 51330530 -166706628 + (TGGA)n Simple_repeat Simple_repeat 4 61 0 1914 125 0 17 chr3 51331392 51331688 -166705470 - AluSx SINE Alu -9 303 13 1641 176 0 26 chr3 51332892 51333204 -166703954 - AluJo SINE Alu -7 305 2 2228 88 0 0 chr3 51333441 51333758 -166703400 + AluSp SINE Alu 1 317 0 1116 241 10 21 chr3 51334088 51334379 -166702779 + Charlie4a DNA MER1_type 18 305 -203 313 216 81 95 chr3 51334471 51334693 -166702465 + Charlie4a DNA MER1_type 287 505 -3 305 283 214 0 chr3 51335248 51335393 -166701765 - MIR SINE MIR -76 186 11 29 0 0 0 chr3 51335511 51335540 -166701618 + AT_rich Low_complexity Low_complexity 1 29 0 269 299 94 8 chr3 51336348 51336475 -166700683 - MIR3 SINE MIR -32 176 39 285 312 65 18 chr3 51336756 51336926 -166700232 + L2 LINE L2 1940 2117 -1197 2241 106 0 3 chr3 51336982 51337294 -166699864 + AluSx SINE Alu 2 312 0 2212 90 3 0 chr3 51337322 51337622 -166699536 + AluSx SINE Alu 1 301 -11 626 144 31 0 chr3 51337632 51337729 -166699429 + MER5A DNA MER1_type 72 171 -18 353 270 131 7 chr3 51338415 51338552 -166698606 - MIR SINE MIR -49 213 60 236 217 67 0 chr3 51338611 51338671 -166698487 - MIR SINE MIR -45 217 154 427 289 222 0 chr3 51340199 51340379 -166696779 + MIR SINE MIR 18 237 -25 355 324 127 0 chr3 51340531 51340673 -166696485 + MIR SINE MIR 87 246 -16 2288 84 0 3 chr3 51341633 51341943 -166695215 + AluY SINE Alu 1 309 -2 24 53 0 0 chr3 51342165 51342203 -166694955 + AT_rich Low_complexity Low_complexity 1 38 0 584 269 23 11 chr3 51342446 51342621 -166694537 - L1MB7 LINE L1 -44 6140 5964 1325 154 48 4 chr3 51342621 51342848 -166694310 - AluJb SINE Alu -17 295 59 1997 114 3 10 chr3 51342870 51343160 -166693998 - AluSx SINE Alu -24 288 1 463 330 123 60 chr3 51343387 51344589 -166692569 + L2 LINE L2 350 1627 -1687 9258 138 13 10 chr3 51344622 51346496 -166690662 + L1MA3 LINE L1 3704 5594 -711 2054 121 0 3 chr3 51346496 51346802 -166690356 + AluSq SINE Alu 1 305 -8 9258 138 13 10 chr3 51346802 51347517 -166689641 + L1MA3 LINE L1 5594 6305 0 528 288 14 47 chr3 51347569 51347784 -166689374 - LTR67 LTR ERVL 0 557 350 * 610 207 113 20 chr3 51347778 51347928 -166689230 - LTR67 LTR ERVL -392 165 2 676 71 0 0 chr3 51348229 51348313 -166688845 + L1PA3 LINE L1 9 92 -6054 40181 36 1 1 chr3 51348313 51353876 -166683282 + L1PA3 LINE L1 595 6155 0 637 238 219 25 chr3 51353940 51354490 -166682668 + LTR50 LTR ERVL 1 508 -15 358 293 103 9 chr3 51354490 51354606 -166682552 - ERVL LTR ERVL -426 5338 5212 1657 216 26 3 chr3 51354746 51355089 -166682069 - L2 LINE L2 -661 2653 2303 240 172 118 97 chr3 51355094 51355187 -166681971 - Charlie1 DNA MER1_type -2019 742 648 252 190 52 17 chr3 51355188 51355246 -166681912 + L2 LINE L2 3213 3272 0 1576 203 0 4 chr3 51356471 51356737 -166680421 + Tigger7 DNA MER2_type 1 265 -468 584 182 0 10 chr3 51356738 51356837 -166680321 + Tigger7 DNA MER2_type 2390 2487 0 307 256 174 8 chr3 51358170 51358291 -166678867 - Charlie8 DNA MER1_type -2173 244 104 378 378 74 27 chr3 51358311 51358607 -166678551 + L1MDa LINE L1 21 330 -6210 240 326 0 31 chr3 51359171 51359269 -166677889 + L1MDa LINE L1 928 1022 -5521 2291 214 27 52 chr3 51359429 51359956 -166677202 + L1MDa LINE L1 1312 1821 -4719 1891 129 0 7 chr3 51359956 51360279 -166676879 - AluJb SINE Alu 0 331 11 2291 214 27 52 chr3 51360279 51360446 -166676712 + L1MDa LINE L1 1821 1991 -4549 290 247 21 21 chr3 51361429 51361522 -166675636 - L1ME LINE L1 -335 5786 5694 2185 96 10 0 chr3 51361570 51361873 -166675285 - AluSp SINE Alu -7 306 1 204 97 0 0 chr3 51362173 51362204 -166674954 + (TTAA)n Simple_repeat Simple_repeat 1 31 0 1190 268 44 84 chr3 51362207 51362458 -166674700 - L2 LINE L2 -16 3297 3074 807 180 0 0 chr3 51362458 51362586 -166674572 - FLAM_A SINE Alu -4 129 2 1190 268 44 84 chr3 51362586 51362834 -166674324 - L2 LINE L2 -239 3074 2818 231 216 0 0 chr3 51363589 51363626 -166673532 + MIR SINE MIR 65 101 -107 225 0 0 0 chr3 51363932 51363957 -166673201 + (GGA)n Simple_repeat Simple_repeat 2 26 0 289 273 141 23 chr3 51364399 51364527 -166672631 + MIR SINE MIR 32 174 -88 1882 149 3 3 chr3 51364788 51365083 -166672075 + AluJb SINE Alu 7 301 -11 748 213 115 8 chr3 51365135 51365380 -166671778 + LTR37A LTR ERV1 198 426 0 188 33 0 33 chr3 51365494 51365524 -166671634 + (CA)n Simple_repeat Simple_repeat 2 30 0 374 196 323 8 chr3 51366208 51366341 -166670817 + MER5A DNA MER1_type 9 183 -6 244 151 94 19 chr3 51366420 51366473 -166670685 + MIR SINE MIR 94 150 -58 5146 43 3 0 chr3 51367764 51368373 -166668785 + L1PA7 LINE L1 5537 6147 -7 387 379 64 0 chr3 51369826 51370029 -166667129 + MIR SINE MIR 35 250 -12 2130 109 10 0 chr3 51371142 51371446 -166665712 - AluSq SINE Alu -6 307 1 771 114 0 0 chr3 51375152 51375257 -166661901 - AluSq/x SINE Alu -207 106 2 1093 170 110 33 chr3 51375306 51375606 -166661552 - L1MB7 LINE L1 -227 5957 5635 328 212 0 15 chr3 51375622 51375688 -166661470 + MIR SINE MIR 86 150 -58 1051 68 0 0 chr3 51375689 51375822 -166661336 + AluSp/q SINE Alu 167 299 -14 2145 65 41 14 chr3 51376959 51377249 -166659909 - AluY SINE Alu -13 298 1 266 278 83 35 chr3 51378575 51378744 -166658414 + L2 LINE L2 2589 2765 -549 2130 110 0 0 chr3 51378998 51379298 -166657860 + AluSx SINE Alu 1 300 -12 438 206 65 98 chr3 51379796 51379980 -166657178 + MIR SINE MIR 35 212 -50 722 254 16 26 chr3 51380033 51380226 -166656932 + MIR SINE MIR 58 248 -14 865 107 25 0 chr3 51380228 51380350 -166656808 - AluSq SINE Alu -80 233 109 958 188 43 24 chr3 51380424 51380632 -166656526 + L1MD2 LINE L1 6087 6298 -61 905 136 109 0 chr3 51380632 51380779 -166656379 - AluSx SINE Alu -23 287 125 545 209 66 38 chr3 51382218 51382413 -166654745 - MER5C DNA MER1_type -3 321 118 2224 107 7 7 chr3 51382413 51382711 -166654447 + AluSq SINE Alu 1 298 -15 545 209 66 38 chr3 51382711 51382726 -166654432 - MER5C DNA MER1_type -206 118 105 286 241 0 11 chr3 51383375 51383462 -166653696 + (TA)n Simple_repeat Simple_repeat 1 86 0 825 167 23 0 chr3 51383464 51383596 -166653562 - AluSx SINE Alu -177 135 1 438 203 13 0 chr3 51387293 51387372 -166649786 - AluJo SINE Alu -178 134 55 1840 155 3 3 chr3 51387373 51387681 -166649477 + AluJb SINE Alu 1 308 0 416 183 0 0 chr3 51387738 51387798 -166649360 - AluJo SINE Alu -251 61 2 751 169 0 52 chr3 51388585 51388721 -166648437 - FLAM_C SINE Alu -4 129 1 21 57 0 0 chr3 51388877 51388912 -166648246 + AT_rich Low_complexity Low_complexity 1 35 0 725 102 9 0 chr3 51388923 51389031 -166648127 - L1MA3 LINE L1 0 6305 6197 861 153 0 0 chr3 51389032 51389156 -166648002 + AluJo SINE Alu 1 124 -188 1149 175 11 0 chr3 51389206 51389389 -166647769 + AluJo SINE Alu 128 312 0 272 125 21 0 chr3 51389410 51389458 -166647700 - L1MA3 LINE L1 -98 6207 6159 469 126 92 0 chr3 51389577 51389664 -166647494 - L1MA3 LINE L1 -173 6132 6038 2230 117 0 0 chr3 51390038 51390336 -166646822 + AluSx SINE Alu 1 298 -14 889 117 7 35 chr3 51390733 51390878 -166646280 - FLAM_C SINE Alu -2 141 1 1785 126 101 0 chr3 51391075 51391352 -166645806 - AluSx SINE Alu -7 305 1 682 247 42 34 chr3 51391800 51392039 -166645119 + MER112 DNA MER1_type 9 249 -11 2320 126 3 0 chr3 51392049 51392358 -166644800 + AluSx SINE Alu 1 310 -2 185 359 47 0 chr3 51392399 51392463 -166644695 - MIR SINE MIR -109 99 33 187 234 106 0 chr3 51393049 51393096 -166644062 - L2 LINE L2 0 3272 3221 2389 108 0 6 chr3 51394435 51394750 -166642408 - AluSq SINE Alu 0 313 1 2325 123 3 0 chr3 51394750 51395058 -166642100 - AluJb SINE Alu -3 309 1 2293 107 3 0 chr3 51396244 51396543 -166640615 - AluSx SINE Alu -12 300 1 786 278 74 0 chr3 51397306 51397522 -166639636 + MIR SINE MIR 17 248 -14 2419 98 7 0 chr3 51398300 51398606 -166638552 - AluSx SINE Alu -3 309 2 216 331 88 35 chr3 51398674 51398899 -166638259 - MIR SINE MIR -18 244 8 368 125 16 0 chr3 51399525 51399589 -166637569 + CT-rich Low_complexity Low_complexity 2 66 0 530 183 9 61 chr3 51399592 51399707 -166637451 - FLAM_C SINE Alu -32 111 3 201 133 0 67 chr3 51399888 51399933 -166637225 + MIR SINE MIR 217 258 -4 2267 111 3 7 chr3 51400672 51400978 -166636180 - AluSx SINE Alu -7 305 1 1509 201 46 16 chr3 51403045 51403348 -166633810 - AluJb SINE Alu 0 312 1 315 169 231 0 chr3 51404054 51404119 -166633039 + Tigger4(Zombi) DNA MER2_type 1 80 -2651 515 249 20 76 chr3 51405216 51405338 -166631820 + Charlie4 DNA MER1_type 85 193 -1768 2440 90 0 31 chr3 51405338 51405660 -166631498 - AluSx SINE Alu 0 312 1 515 249 20 76 chr3 51405660 51405734 -166631424 + Charlie4 DNA MER1_type 193 270 -1691 427 33 33 0 chr3 51405754 51405815 -166631343 + (TC)n Simple_repeat Simple_repeat 2 64 0 333 0 0 0 chr3 51405815 51405852 -166631306 + (CA)n Simple_repeat Simple_repeat 1 37 0 348 214 71 56 chr3 51405866 51405992 -166631166 + Charlie4 DNA MER1_type 1830 1957 -4 1301 196 129 22 chr3 51406028 51406339 -166630819 + MER2 DNA MER2_type 1 344 0 675 211 32 43 chr3 51406695 51406880 -166630278 - MER3 DNA MER1_type -16 193 11 1734 180 0 17 chr3 51408263 51408563 -166628595 - AluJo SINE Alu -9 303 9 2104 129 0 7 chr3 51409989 51410284 -166626874 + AluSx SINE Alu 1 293 -19 258 32 0 0 chr3 51410666 51410697 -166626461 + (CGGA)n Simple_repeat Simple_repeat 2 32 0 * 432 0 0 0 chr3 51410696 51410744 -166626414 + (CA)n Simple_repeat Simple_repeat 2 49 0 189 0 0 0 chr3 51412307 51412328 -166624830 + (T)n Simple_repeat Simple_repeat 1 21 0 405 143 124 29 chr3 51412531 51412636 -166624522 - MER106B DNA MER1_type -22 1037 923 200 163 47 0 chr3 51413762 51413805 -166623353 + CT-rich Low_complexity Low_complexity 6 50 0 288 0 0 0 chr3 51414129 51414161 -166622997 + (GGA)n Simple_repeat Simple_repeat 1 32 0 198 0 0 0 chr3 51414447 51414469 -166622689 + (A)n Simple_repeat Simple_repeat 1 22 0 2087 129 10 3 chr3 51417098 51417400 -166619758 - AluSx SINE Alu -8 304 1 216 0 0 0 chr3 51419545 51419569 -166617589 + (TG)n Simple_repeat Simple_repeat 2 25 0 180 0 0 0 chr3 51421141 51421161 -166615997 + (T)n Simple_repeat Simple_repeat 1 20 0 30 0 0 0 chr3 51422553 51422583 -166614575 + AT_rich Low_complexity Low_complexity 1 30 0 740 125 0 0 chr3 51423830 51423942 -166613216 - AluSg/x SINE Alu -3 306 195 198 0 0 0 chr3 51425115 51425137 -166612021 + (T)n Simple_repeat Simple_repeat 1 22 0 839 116 116 0 chr3 51425884 51426013 -166611145 + U4 snRNA snRNA 1 144 -1 210 235 129 24 chr3 51426666 51426751 -166610407 + MIR SINE MIR 70 163 -99 387 297 35 99 chr3 51429912 51430114 -166607044 - L1MC4a LINE L1 -1882 5926 5749 1940 162 0 19 chr3 51430114 51430423 -166606735 - AluJb SINE Alu -7 305 3 387 297 35 99 chr3 51430423 51430533 -166606625 - L1MC4a LINE L1 -2059 5749 5634 319 287 8 90 chr3 51430704 51430826 -166606332 + MIR SINE MIR 49 160 -102 707 285 221 10 chr3 51430831 51431221 -166605937 - L2 LINE L2 -1 3312 2841 335 213 121 11 chr3 51431374 51431505 -166605653 + MLT1I LTR MaLR 244 360 -49 472 204 11 0 chr3 51431517 51431605 -166605553 + MER5A DNA MER1_type 101 189 0 2049 230 87 38 chr3 51431866 51431941 -166605217 + L1MC4 LINE L1 7105 7175 -867 2299 76 28 0 chr3 51431941 51432229 -166604929 + AluSp SINE Alu 3 298 -15 2049 230 87 38 chr3 51432229 51432911 -166604247 + L1MC4 LINE L1 7175 7899 -143 180 0 0 0 chr3 51433337 51433357 -166603801 + (TA)n Simple_repeat Simple_repeat 2 21 0 1659 158 18 7 chr3 51434740 51435024 -166602134 - AluJo SINE Alu -25 287 1 284 274 186 69 chr3 51435120 51435324 -166601834 + MIR SINE MIR 29 256 -6 784 247 106 22 chr3 51436588 51436815 -166600343 + MIR SINE MIR 17 262 0 465 275 47 42 chr3 51437614 51437807 -166599351 + MIR SINE MIR 52 245 -17 1107 150 9 94 chr3 51437994 51438227 -166598931 - MER20 DNA MER1_type -1 218 6 705 222 78 0 chr3 51439435 51439602 -166597556 - MIR SINE MIR -2 260 81 2225 51 4 0 chr3 51440740 51441014 -166596144 + AluY SINE Alu 19 293 -18 3565 160 34 39 chr3 51441073 51441357 -166595801 - L1MB3 LINE L1 -19 6164 5880 2290 80 0 3 chr3 51441357 51441659 -166595499 + AluSx SINE Alu 1 301 -11 3565 160 34 39 chr3 51441659 51442119 -166595039 - L1MB3 LINE L1 -303 5880 5424 338 65 22 0 chr3 51442163 51442209 -166594949 + MER30B DNA MER1_type 4 50 -140 1100 247 16 8 chr3 51442344 51442595 -166594563 - MLT1F LTR MaLR -261 281 29 756 203 71 47 chr3 51442615 51442827 -166594331 - MLT1J LTR MaLR -243 268 52 445 264 0 9 chr3 51442827 51442933 -166594225 - LTR16C LTR ERVL 0 491 387 303 139 167 14 chr3 51443890 51443962 -166593196 - Charlie4a DNA MER1_type 0 508 426 574 126 19 0 chr3 51443967 51444070 -166593088 - L1PB2 LINE L1 0 6151 6047 15271 191 21 13 chr3 51444070 51446813 -166590345 - L1P5 LINE L1 -467 6400 3681 2095 131 0 0 chr3 51446813 51447111 -166590047 - AluSx SINE Alu -14 298 1 15271 191 21 13 chr3 51447111 51450443 -166586715 - L1P5 LINE L1 -3186 3681 18 1742 211 41 7 chr3 51450443 51450861 -166586297 - Charlie4a DNA MER1_type -53 455 24 990 257 51 20 chr3 51452043 51452383 -166584775 - LTR16C LTR ERVL -8 483 72 975 186 59 20 chr3 51454009 51454213 -166582945 + MIR SINE MIR 51 262 0 1598 185 31 109 chr3 51454307 51454728 -166582430 - MLT1E LTR MaLR 0 593 206 267 314 51 8 chr3 51455429 51455547 -166581611 - MIR SINE MIR -63 145 23 187 269 261 22 chr3 51455836 51455970 -166581188 - MIR3 SINE MIR -25 183 18 205 206 38 133 chr3 51456982 51457096 -166580062 + MIR SINE MIR 33 151 -57 1353 177 69 22 chr3 51457576 51457853 -166579305 + AluJo SINE Alu 1 290 -22 1079 167 63 22 chr3 51457962 51458184 -166578974 + AluJb SINE Alu 1 231 -81 528 165 0 10 chr3 51458189 51458286 -166578872 - L1MC4 LINE L1 -644 7398 7303 234 224 0 0 chr3 51458302 51458351 -166578807 - Alu SINE Alu -2 300 252 2095 90 0 4 chr3 51458399 51458677 -166578481 + AluSc SINE Alu 18 294 -15 485 293 61 0 chr3 51458682 51458880 -166578278 - L1M4 LINE L1 -1822 4324 4115 1032 156 0 0 chr3 51458881 51459061 -166578097 + (TA)n Simple_repeat Simple_repeat 1 180 0 570 102 68 0 chr3 51459061 51459149 -166578009 - AluSg/x SINE Alu -1 311 218 325 123 228 0 chr3 51459149 51459206 -166577952 + AluJ/FLAM SINE Alu 31 100 -202 1698 249 2 30 chr3 51459285 51459492 -166577666 - L1M4 LINE L1 -2275 3871 3660 1904 139 3 40 chr3 51459492 51459816 -166577342 - AluSx SINE Alu 0 312 1 1698 249 2 30 chr3 51459816 51460106 -166577052 - L1M4 LINE L1 -2486 3660 3388 1117 231 28 8 chr3 51460499 51460859 -166576299 - L1M4 LINE L1 -2848 3298 2932 462 179 0 0 chr3 51460871 51460966 -166576192 + (TG)n Simple_repeat Simple_repeat 2 96 0 1142 170 63 0 chr3 51460967 51461173 -166575985 - AluJb SINE Alu -16 296 78 1292 82 23 0 chr3 51461173 51461344 -166575814 - MER30 DNA MER1_type -55 175 1 1905 229 53 9 chr3 51461345 51461896 -166575262 - L1M4 LINE L1 -3417 2729 2155 2189 125 133 18 chr3 51461934 51462318 -166574840 - MSTA LTR MaLR 0 428 1 3666 199 6 33 chr3 51462344 51462841 -166574317 - L1PB4 LINE L1 0 6156 5686 1701 147 31 21 chr3 51462841 51463127 -166574031 - AluJo SINE Alu -17 295 7 3666 199 6 33 chr3 51463127 51463418 -166573740 - L1PB4 LINE L1 -470 5686 5389 1030 148 102 0 chr3 51463640 51463816 -166573342 + MER30 DNA MER1_type 37 230 0 2161 104 0 7 chr3 51463856 51464155 -166573003 - AluSg SINE Alu -13 297 1 388 321 30 8 chr3 51464593 51464727 -166572431 + MIR3 SINE MIR 67 203 -5 2090 109 30 0 chr3 51465107 51465410 -166571748 + AluSx SINE Alu 1 312 0 326 227 45 34 chr3 51465509 51465597 -166571561 - MIR SINE MIR -71 191 103 667 225 103 82 chr3 51465765 51466348 -166570810 + L1MC5 LINE L1 7102 7696 -265 22 0 0 0 chr3 51466710 51466732 -166570426 + AT_rich Low_complexity Low_complexity 1 22 0 1282 288 92 9 chr3 51467158 51467832 -166569326 + L2 LINE L2 2530 3274 -39 1102 148 151 109 chr3 51467840 51467998 -166569160 + MER2 DNA MER2_type 1 151 -194 1931 103 10 58 chr3 51467998 51468309 -166568849 - AluSx SINE Alu -16 296 1 1102 148 151 109 chr3 51468309 51468481 -166568677 + MER2 DNA MER2_type 151 345 0 2194 107 10 0 chr3 51468930 51469239 -166567919 + AluSx SINE Alu 1 312 0 205 357 24 0 chr3 51469393 51469477 -166567681 - MIR3 SINE MIR -5 203 118 287 283 75 41 chr3 51469612 51469758 -166567400 + MIR SINE MIR 30 184 -24 2052 97 17 0 chr3 51469937 51470237 -166566921 + AluSg SINE Alu 1 305 -5 180 0 0 0 chr3 51470431 51470451 -166566707 + (CCCG)n Simple_repeat Simple_repeat 4 23 0 711 27 18 2 chr3 51470831 51471052 -166566106 - AluY SINE Alu -17 294 30 475 231 201 0 chr3 51471334 51471468 -166565690 - MIR SINE MIR -88 174 14 1632 112 30 88 chr3 51471601 51471906 -166565252 - MER1B DNA MER1_type 0 339 53 2234 88 0 19 chr3 51472140 51472447 -166564711 - AluSg SINE Alu -9 301 1 260 164 110 67 chr3 51472719 51472792 -166564366 - AluJ/FLAM SINE Alu -237 65 1 2062 121 0 10 chr3 51473002 51473308 -166563850 - AluSg SINE Alu -7 303 1 1927 118 11 7 chr3 51473311 51473640 -166563518 - AluSq SINE Alu 0 330 1 2362 47 0 27 chr3 51473680 51473981 -166563177 - AluY SINE Alu -16 295 3 790 329 157 38 chr3 51474147 51474912 -166562246 - L2 LINE L2 -516 2798 1892 1986 128 13 3 chr3 51474912 51475216 -166561942 + AluSx SINE Alu 5 311 -1 790 329 157 38 chr3 51475216 51475421 -166561737 - L2 LINE L2 -1422 1892 1713 554 349 89 46 chr3 51475427 51476075 -166561083 - L2 LINE L2 -1890 1424 749 1766 123 33 11 chr3 51476271 51476574 -166560584 - AluSq SINE Alu 0 312 4 406 198 49 0 chr3 51476699 51476780 -166560378 - MLT1F LTR MaLR -457 85 1 760 297 66 70 chr3 51476846 51476877 -166560281 + L2 LINE L2 2220 2250 -1064 1957 128 0 3 chr3 51476877 51477167 -166559991 + AluSx SINE Alu 1 289 -23 760 297 66 70 chr3 51477167 51477233 -166559925 + L2 LINE L2 2250 2315 -999 2464 124 39 181 chr3 51477233 51477879 -166559279 - MLT2B3 LTR ERVL 0 554 1 760 297 66 70 chr3 51477879 51478309 -166558849 + L2 LINE L2 2315 2746 -568 938 152 129 0 chr3 51478401 51478572 -166558586 - L1MB3 LINE L1 0 6183 5991 200 356 35 26 chr3 51478572 51478687 -166558471 + L2 LINE L2 2883 2998 -274 274 180 80 0 chr3 51478853 51478903 -166558255 + L2 LINE L2 3219 3272 0 282 167 0 0 chr3 51481151 51481211 -166555947 + CT-rich Low_complexity Low_complexity 1 60 0 251 152 0 106 chr3 51481613 51481679 -166555479 - L2 LINE L2 0 3272 3214 1863 167 3 0 chr3 51481801 51482112 -166555046 - AluJo SINE Alu 0 312 1 2044 114 4 0 chr3 51482125 51482436 -166554722 - AluSp SINE Alu 0 312 1 22 0 0 0 chr3 51482626 51482648 -166554510 + AT_rich Low_complexity Low_complexity 1 22 0 572 236 28 0 chr3 51482715 51482859 -166554299 - L1MD2 LINE L1 -17 6736 6589 288 0 0 0 chr3 51482860 51482892 -166554266 + (TG)n Simple_repeat Simple_repeat 2 33 0 6221 194 99 98 chr3 51482897 51483440 -166553718 - L1MD2 LINE L1 -234 6519 5978 2114 121 3 3 chr3 51483440 51483745 -166553413 - AluSq SINE Alu -8 305 1 6221 194 99 98 chr3 51483745 51485511 -166551647 - L1MD2 LINE L1 -775 5978 4215 441 188 25 0 chr3 51485511 51485591 -166551567 - AluJ/FLAM SINE Alu -229 83 2 6221 194 99 98 chr3 51485591 51486285 -166550873 - L1MD2 LINE L1 -2538 4215 3523 1525 158 0 92 chr3 51486285 51486602 -166550556 + AluJo SINE Alu 1 288 -24 6221 194 99 98 chr3 51486602 51487051 -166550107 - L1MD2 LINE L1 -3230 3523 3076 624 142 186 9 chr3 51487051 51487164 -166549994 - FLAM_A SINE Alu 0 133 1 6221 194 99 98 chr3 51487164 51487748 -166549410 - L1MD2 LINE L1 -3677 3076 2494 765 196 0 8 chr3 51487748 51487881 -166549277 - FLAM_C SINE Alu -1 132 1 2048 122 10 0 chr3 51487885 51488189 -166548969 - AluSx SINE Alu -5 307 1 6221 194 99 98 chr3 51488189 51488281 -166548877 - L1MD2 LINE L1 -4261 2492 2402 1350 186 51 0 chr3 51488281 51488534 -166548624 + AluJo SINE Alu 1 266 -46 6221 194 99 98 chr3 51488534 51489383 -166547775 - L1MD2 LINE L1 -4351 2402 1555 1610 101 0 0 chr3 51489383 51489600 -166547558 - AluSg/x SINE Alu -13 297 81 6221 194 99 98 chr3 51489600 51489709 -166547449 - L1MD2 LINE L1 -5198 1555 4 185 300 0 0 chr3 51490281 51490321 -166546837 + L2 LINE L2 3254 3293 -20 24 32 0 0 chr3 51490619 51490650 -166546508 + AT_rich Low_complexity Low_complexity 1 31 0 378 327 109 0 chr3 51491472 51491637 -166545521 + MER91A DNA MER1_type 1 183 -13 2111 131 0 0 chr3 51492763 51493068 -166544090 - AluSx SINE Alu -7 305 1 2053 116 7 3 chr3 51493265 51493643 -166543515 - AluSq SINE Alu 0 379 1 632 261 197 0 chr3 51493823 51494026 -166543132 - MIR SINE MIR -1 261 19 30 0 0 0 chr3 51494187 51494217 -166542941 + AT_rich Low_complexity Low_complexity 1 30 0 1352 163 54 0 chr3 51494230 51494470 -166542688 + AluJb SINE Alu 1 253 -59 218 122 0 24 chr3 51494492 51494533 -166542625 + (TAGA)n Simple_repeat Simple_repeat 2 41 0 979 151 47 12 chr3 51494533 51494705 -166542453 - AluJo SINE Alu -129 183 6 2411 53 0 10 chr3 51494736 51495037 -166542121 - AluY SINE Alu -13 298 1 1253 226 175 5 chr3 51495581 51495980 -166541178 - MLT1C LTR MaLR 0 467 1 463 284 60 11 chr3 51496119 51496302 -166540856 + L1MEd LINE L1 23 214 -5905 824 309 50 54 chr3 51496333 51496374 -166540784 + L1MEd LINE L1 287 327 -5792 1814 133 4 4 chr3 51496374 51496653 -166540505 + AluJo SINE Alu 1 279 -33 198 0 0 0 chr3 51496655 51496677 -166540481 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 824 309 50 54 chr3 51496677 51497111 -166540047 + L1MEd LINE L1 328 763 -5356 535 242 116 53 chr3 51497159 51497461 -166539697 + L1M4 LINE L1 3597 3917 -2229 870 202 121 0 chr3 51498183 51498381 -166538777 + MER58A DNA MER1_type 3 224 0 299 225 50 31 chr3 51498412 51498572 -166538586 + MER5C DNA MER1_type 62 314 -10 1654 151 6 58 chr3 51499743 51500054 -166537104 + AluJb SINE Alu 1 295 -17 1892 144 0 10 chr3 51500492 51500791 -166536367 + AluJb SINE Alu 1 296 -16 826 120 0 70 chr3 51500900 51501042 -166536116 - FLAM_C SINE Alu 0 133 2 186 71 0 0 chr3 51501096 51501124 -166536034 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 326 68 80 0 chr3 51501225 51501313 -166535845 + (TA)n Simple_repeat Simple_repeat 1 95 0 225 0 0 0 chr3 51501313 51501338 -166535820 + (GA)n Simple_repeat Simple_repeat 2 26 0 1899 140 0 17 chr3 51502634 51502927 -166534231 - AluJb SINE Alu -21 291 4 1766 121 7 34 chr3 51502930 51503227 -166533931 - AluJb SINE Alu -11 301 13 1274 142 18 23 chr3 51503238 51503457 -166533701 - MER20 DNA MER1_type -1 218 1 26 64 0 0 chr3 51503948 51503995 -166533163 + AT_rich Low_complexity Low_complexity 1 47 0 2106 120 3 3 chr3 51504413 51504721 -166532437 + AluSq SINE Alu 1 308 -5 364 253 62 48 chr3 51505648 51505794 -166531364 - MIR3 SINE MIR -28 180 33 721 179 0 0 chr3 51505950 51506067 -166531091 + AluJo/FLAM SINE Alu 4 120 -182 2350 79 0 7 chr3 51506068 51506373 -166530785 - AluY SINE Alu -8 303 1 26 30 0 0 chr3 51506378 51506411 -166530747 + AT_rich Low_complexity Low_complexity 1 33 0 207 0 0 0 chr3 51506438 51506461 -166530697 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1598 175 34 17 chr3 51506797 51507088 -166530070 + AluSx SINE Alu 1 296 -16 1639 176 14 0 chr3 51509799 51510083 -166527075 + AluJo SINE Alu 1 288 -24 2090 79 0 0 chr3 51510302 51510568 -166526590 + AluSc SINE Alu 33 298 -11 300 260 101 26 chr3 51512329 51512508 -166524650 + MIR SINE MIR 2 188 -65 367 257 171 18 chr3 51514733 51514955 -166522203 + L1ME2 LINE L1 5272 5512 -654 378 113 0 0 chr3 51515008 51515061 -166522097 + MLT1B LTR MaLR 1 53 -337 * 443 169 36 0 chr3 51515052 51515135 -166522023 + MLT1B LTR MaLR 305 390 0 372 318 159 16 chr3 51515147 51515399 -166521759 + L1ME2 LINE L1 5596 5883 -281 253 241 234 7 chr3 51516194 51516335 -166520823 + L3 LINE CR1 1301 1473 -104 440 259 169 6 chr3 51516949 51517115 -166520043 + L2 LINE L2 3075 3267 -5 1074 164 10 43 chr3 51518241 51518448 -166518710 - AluJb SINE Alu -29 283 84 807 271 99 18 chr3 51519251 51519535 -166517623 + MLT1L LTR MaLR 201 507 -108 935 156 43 21 chr3 51519663 51519849 -166517309 + MER96B DNA MER1_type? 3 192 -225 314 328 9 0 chr3 51519920 51520036 -166517122 + MIR SINE MIR 21 137 -71 205 286 57 86 chr3 51522080 51522220 -166514938 - MIR3 SINE MIR -32 176 41 285 29 0 0 chr3 51522304 51522338 -166514820 + (GA)n Simple_repeat Simple_repeat 2 35 0 2182 107 0 3 chr3 51522444 51522744 -166514414 + AluSx SINE Alu 1 299 -13 2152 216 57 61 chr3 51525101 51525224 -166511934 - L1MC5 LINE L1 -173 7788 7666 2027 112 0 0 chr3 51525224 51525545 -166511613 - AluSx SINE Alu 0 325 5 2152 216 57 61 chr3 51525545 51526221 -166510937 - L1MC5 LINE L1 -295 7666 6991 1416 137 0 21 chr3 51526343 51526576 -166510582 - AluSg/x SINE Alu 0 310 83 244 262 187 28 chr3 51526578 51526685 -166510473 - MIR SINE MIR -118 144 21 26 0 0 0 chr3 51527298 51527324 -166509834 + AT_rich Low_complexity Low_complexity 1 26 0 222 167 83 0 chr3 51527713 51527761 -166509397 + L2 LINE L2 3261 3312 -1 367 150 0 0 chr3 51527796 51527856 -166509302 + MER89 LTR ERV1 1 60 -499 455 167 13 0 chr3 51527908 51527986 -166509172 + MER89 LTR ERV1 301 379 -180 1750 84 0 13 chr3 51527986 51528223 -166508935 - AluSg SINE Alu -13 297 64 701 265 101 59 chr3 51528241 51528596 -166508562 - MLT1K LTR MaLR -88 500 131 308 221 0 26 chr3 51529169 51529246 -166507912 + MLT1K LTR MaLR 141 215 -373 404 280 20 0 chr3 51529246 51529346 -166507812 + MER5A DNA MER1_type 88 189 0 521 231 187 0 chr3 51529934 51530068 -166507090 - MER5A DNA MER1_type 0 189 31 496 234 182 26 chr3 51530091 51530245 -166506913 - MER5B DNA MER1_type 0 178 1 353 296 49 28 chr3 51530400 51530542 -166506616 - MIR SINE MIR -87 175 31 246 283 283 9 chr3 51530594 51530700 -166506458 + MIR SINE MIR 72 206 -56 376 179 115 0 chr3 51531223 51531301 -166505857 - MER81 DNA DNA -27 87 1 473 317 138 39 chr3 51531841 51532226 -166504932 - MLT1L LTR MaLR -3 612 190 310 209 9 29 chr3 51533500 51533605 -166503553 + CT-rich Low_complexity Low_complexity 4 106 0 867 261 74 5 chr3 51533641 51533856 -166503302 - MIR SINE MIR -13 249 20 769 328 75 20 chr3 51534037 51534582 -166502576 - L1MC4 LINE L1 -169 7873 7299 1043 232 82 44 chr3 51534622 51534989 -166502169 - MLT1K LTR MaLR -18 570 190 314 250 205 20 chr3 51535987 51536142 -166501016 + MLT1K LTR MaLR 329 530 -58 567 0 0 0 chr3 51536142 51536205 -166500953 + (TG)n Simple_repeat Simple_repeat 2 64 0 314 250 205 20 chr3 51536205 51536249 -166500909 + MLT1K LTR MaLR 530 565 -23 425 200 0 13 chr3 51536352 51536507 -166500651 + CT-rich Low_complexity Low_complexity 1 152 0 346 321 131 0 chr3 51536757 51536925 -166500233 + MIR SINE MIR 73 262 0 2047 126 13 23 chr3 51537557 51537888 -166499270 + AluJb SINE Alu 1 312 0 383 274 51 6 chr3 51537905 51538062 -166499096 + L1MEd LINE L1 942 1105 -5014 431 314 86 32 chr3 51538244 51538464 -166498694 + MIR SINE MIR 23 254 -8 698 237 128 79 chr3 51539324 51539831 -166497327 - MLT1H LTR MaLR 0 549 18 332 292 10 0 chr3 51540193 51540289 -166496869 - MIR3 SINE MIR -24 184 88 35 41 0 0 chr3 51540836 51540885 -166496273 + AT_rich Low_complexity Low_complexity 1 49 0 2021 219 73 32 chr3 51540954 51541519 -166495639 + MLT1E2 LTR MaLR 39 626 0 904 304 122 29 chr3 51541915 51542694 -166494464 - L2 LINE L2 0 3313 2454 409 129 0 0 chr3 51542788 51542858 -166494300 - L1PA5 LINE L1 -2 6152 6083 685 243 14 91 chr3 51542911 51543121 -166494037 - MIR SINE MIR -51 211 18 473 214 268 0 chr3 51543268 51543436 -166493722 + MER20 DNA MER1_type 7 219 0 1018 225 115 48 chr3 51544372 51544480 -166492678 + L1M4 LINE L1 4762 4861 -1285 2751 0 0 0 chr3 51544480 51544775 -166492383 + AluYa5 SINE Alu 1 295 -16 1018 225 115 48 chr3 51544775 51545256 -166491902 + L1M4 LINE L1 4861 5391 -755 291 114 0 0 chr3 51545987 51546031 -166491127 + (CCCCCG)n Simple_repeat Simple_repeat 4 47 0 686 207 270 34 chr3 51547045 51547194 -166489964 - L2 LINE L2 -235 3078 2965 1504 168 104 3 chr3 51547194 51547510 -166489648 + MER7A DNA MER2_type 1 346 0 686 207 270 34 chr3 51547510 51547651 -166489507 - L2 LINE L2 -348 2965 2715 24 0 0 0 chr3 51547705 51547729 -166489429 + AT_rich Low_complexity Low_complexity 1 24 0 1876 152 0 32 chr3 51547822 51548132 -166489026 + AluSx SINE Alu 13 312 0 1795 149 46 26 chr3 51548160 51548462 -166488696 + AluJo SINE Alu 1 308 -4 2289 95 3 7 chr3 51548809 51549113 -166488045 - AluSx SINE Alu -9 303 1 595 225 124 9 chr3 51549128 51549466 -166487692 - L1M4 LINE L1 -2739 3407 3031 241 154 0 0 chr3 51549480 51549519 -166487639 - L1M4 LINE L1 -3325 2821 2783 1316 206 75 75 chr3 51549528 51549745 -166487413 - L1M4 LINE L1 -3438 2708 2492 1944 140 0 28 chr3 51549745 51550066 -166487092 - AluSx SINE Alu 0 312 1 1316 206 75 75 chr3 51550066 51550436 -166486722 - L1M4 LINE L1 -3653 2493 2121 21 82 0 0 chr3 51551741 51551790 -166485368 + AT_rich Low_complexity Low_complexity 1 49 0 821 130 8 30 chr3 51551800 51551931 -166485227 + FLAM_C SINE Alu 1 128 -5 752 191 0 26 chr3 51551931 51552072 -166485086 - FAM SINE Alu -145 40 1 240 291 142 15 chr3 51552167 51552301 -166484857 - MLT1J LTR MaLR -45 466 316 404 247 40 3 chr3 51552313 51552449 -166484709 + L1MC4 LINE L1 7027 7247 -668 309 281 0 0 chr3 51552705 51552801 -166484357 + L1MC4a LINE L1 5731 5826 -348 1978 205 56 89 chr3 51552869 51553056 -166484102 - MER21B LTR ERV1 -81 782 590 1910 104 94 3 chr3 51553056 51553343 -166483815 - AluSq SINE Alu 0 313 1 1978 205 56 89 chr3 51553343 51553839 -166483319 - MER21B LTR ERV1 -273 590 122 2005 125 7 16 chr3 51553917 51554222 -166482936 + AluSx SINE Alu 1 302 -10 314 246 29 0 chr3 51554253 51554322 -166482836 - MER21B LTR ERV1 -775 88 18 373 259 135 42 chr3 51554369 51554562 -166482596 + L1MC4 LINE L1 7735 7945 -97 283 288 43 25 chr3 51554624 51554787 -166482371 - L1 LINE L1 -1488 4658 4493 2267 70 7 13 chr3 51555080 51555379 -166481779 - AluSp SINE Alu -16 297 1 33 25 0 0 chr3 51555565 51555605 -166481553 + AT_rich Low_complexity Low_complexity 1 40 0 2230 103 20 3 chr3 51556531 51556823 -166480335 + AluSg SINE Alu 1 297 -13 1278 169 0 10 chr3 51556980 51557187 -166479971 + AluJb SINE Alu 89 293 -19 299 233 108 8 chr3 51557238 51557367 -166479791 + L1MC4a LINE L1 5882 6023 -1785 350 276 135 6 chr3 51557584 51557740 -166479418 - HAL1b LINE L1 -574 774 599 559 302 60 6 chr3 51557879 51558061 -166479097 - MIR SINE MIR -51 211 20 563 200 40 32 chr3 51558340 51558465 -166478693 + FLAM_A SINE Alu 2 127 -6 2443 61 0 0 chr3 51558467 51558760 -166478398 + AluY SINE Alu 1 293 -18 325 203 0 14 chr3 51558819 51558893 -166478265 - L1MB2 LINE L1 -19 6152 6080 5155 52 2 0 chr3 51558995 51560089 -166477069 + L1PA6 LINE L1 4827 5921 -233 1616 170 128 0 chr3 51561356 51561685 -166475473 - MSTB LTR MaLR -55 371 1 1037 124 31 109 chr3 51562566 51562771 -166474387 - MLT1B LTR MaLR -75 315 132 808 87 72 29 chr3 51562771 51562909 -166474249 - L1PA8 LINE L1 -2 6170 6027 1037 124 31 109 chr3 51562909 51562960 -166474198 - MLT1B LTR MaLR -258 132 79 2048 123 3 3 chr3 51562960 51563277 -166473881 + AluJb SINE Alu 1 317 0 673 211 103 27 chr3 51563287 51563472 -166473686 - LTR32 LTR ERVL -238 233 35 539 298 49 55 chr3 51565028 51565354 -166471804 + HAL1b LINE L1 196 519 -829 290 258 98 8 chr3 51565741 51565873 -166471285 - L1MC4a LINE L1 -1785 6023 5880 531 219 41 27 chr3 51565922 51566068 -166471090 - AluJb SINE Alu -20 292 145 23 0 0 0 chr3 51568360 51568383 -166468775 + AT_rich Low_complexity Low_complexity 1 23 0 188 159 23 0 chr3 51568387 51568431 -166468727 + L3 LINE CR1 804 848 -729 446 150 10 20 chr3 51568960 51569060 -166468098 - L1MA4A LINE L1 -9 6294 6196 449 136 80 0 chr3 51569091 51569179 -166467979 + L1MA4 LINE L1 6089 6183 -117 4227 93 0 18 chr3 51569467 51570123 -166467035 + L1P LINE L1 4513 5156 -990 353 251 68 32 chr3 51570245 51570464 -166466694 + L1ME LINE L1 4909 5135 -1011 1865 191 61 46 chr3 51570472 51570948 -166466210 - MLT1D LTR MaLR 0 505 23 568 195 98 8 chr3 51571061 51571184 -166465974 + AluJo SINE Alu 1 134 -178 296 285 48 20 chr3 51571222 51571452 -166465706 + L1ME LINE L1 5308 5546 -634 1869 119 59 11 chr3 51571998 51572284 -166464874 + AluSx SINE Alu 1 300 -12 619 199 48 0 chr3 51574984 51575130 -166462028 + MER58B DNA MER1_type 183 335 -6 281 270 73 95 chr3 51577039 51577176 -166459982 - MER5A DNA MER1_type -55 134 1 8496 35 2 0 chr3 51578375 51579476 -166457682 + L1P LINE L1 2909 4011 -2135 499 257 110 37 chr3 51579590 51579890 -166457268 - L1ME4a LINE L1 -216 5905 5584 377 284 131 37 chr3 51580055 51580498 -166456660 + L1ME LINE L1 5347 5818 -303 219 370 0 72 chr3 51581268 51581406 -166455752 + L2 LINE L2 3137 3264 -8 7967 114 43 26 chr3 51582245 51583455 -166453703 + Tigger1 DNA MER2_type 340 1527 -891 2064 78 0 51 chr3 51583455 51583748 -166453410 + AluSc SINE Alu 1 278 -31 269 26 26 0 chr3 51583753 51583791 -166453367 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7967 114 43 26 chr3 51583791 51583939 -166453219 + Tigger1 DNA MER2_type 1530 1728 -690 234 295 139 31 chr3 51584040 51584169 -166452989 - L2 LINE L2 -339 2974 2832 183 375 21 10 chr3 51585555 51585651 -166451507 - MIR3 SINE MIR -4 204 108 261 282 57 48 chr3 51585940 51586064 -166451094 - L2 LINE L2 -9 3304 3180 365 259 173 7 chr3 51586217 51586495 -166450663 - HAL1 LINE L1 -165 2342 2019 819 290 80 9 chr3 51586669 51587117 -166450041 - HAL1 LINE L1 -711 1796 1317 526 245 183 27 chr3 51587264 51587635 -166449523 - LTR48B LTR ERV1 -40 604 176 3739 67 5 63 chr3 51587735 51588305 -166448853 + HERVL-A1 LTR ERVL 458 994 -4660 * 4775 81 29 3 chr3 51588302 51588572 -166448586 + HERVL-A1 LTR ERVL 4948 5209 -445 207 0 0 0 chr3 51588572 51588595 -166448563 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4775 81 29 3 chr3 51588595 51589013 -166448145 + HERVL-A1 LTR ERVL 5209 5654 0 3294 76 9 14 chr3 51589013 51589459 -166447699 + MLT2A1 LTR ERVL 1 444 0 270 308 27 34 chr3 51590641 51590787 -166446371 + L1ME LINE L1 4699 4843 -1303 420 267 87 24 chr3 51591171 51591377 -166445781 + L1ME LINE L1 5384 5602 -519 324 289 24 0 chr3 51592647 51592730 -166444428 - L2 LINE L2 -1 3312 3228 324 373 25 21 chr3 51593389 51593625 -166443533 + L1 LINE L1 4280 4516 -1630 227 189 38 19 chr3 51593640 51593693 -166443465 + CT-rich Low_complexity Low_complexity 1 54 0 6411 176 19 3 chr3 51593794 51595598 -166441560 - L1P4 LINE L1 -426 5739 3912 369 100 83 0 chr3 51595927 51595987 -166441171 + L1PA16 LINE L1 6085 6149 -17 1782 185 0 19 chr3 51596727 51597035 -166440123 - AluJb SINE Alu -10 302 1 626 193 60 60 chr3 51597148 51597314 -166439844 + FRAM SINE Alu 1 166 0 21 0 0 0 chr3 51597728 51597749 -166439409 + AT_rich Low_complexity Low_complexity 1 21 0 1575 134 20 72 chr3 51598599 51598891 -166438267 + AluJo SINE Alu 1 277 -35 472 155 172 0 chr3 51599016 51599132 -166438026 - Charlie1 DNA MER1_type -4 2757 2622 * 796 223 30 20 chr3 51599115 51599312 -166437846 - Charlie1 DNA MER1_type -2519 242 44 21 0 0 0 chr3 51600253 51600274 -166436884 + AT_rich Low_complexity Low_complexity 1 21 0 2309 114 0 3 chr3 51600277 51600585 -166436573 + AluSx SINE Alu 1 307 -5 417 145 0 14 chr3 51601571 51601640 -166435518 + AluJ/FLAM SINE Alu 23 90 -222 282 319 24 0 chr3 51602652 51602818 -166434340 + (TG)n Simple_repeat Simple_repeat 1 170 0 522 245 227 0 chr3 51603494 51603657 -166433501 + MIR SINE MIR 63 262 0 180 77 0 0 chr3 51604036 51604062 -166433096 + (GGCTG)n Simple_repeat Simple_repeat 3 28 0 2188 87 0 7 chr3 51604421 51604698 -166432460 + AluSx SINE Alu 1 275 -37 1492 211 99 14 chr3 51604760 51605186 -166431972 - MER20B DNA MER1_type -44 739 278 2199 121 0 3 chr3 51605186 51605499 -166431659 + AluSx SINE Alu 1 312 0 242 324 7 49 chr3 51605511 51605653 -166431505 - L2 LINE L2 -1421 1893 1758 428 352 85 45 chr3 51605654 51606359 -166430799 - L2 LINE L2 -1833 1481 749 1969 112 32 7 chr3 51606555 51606860 -166430298 - AluSq SINE Alu 0 312 1 28 29 0 0 chr3 51607166 51607201 -166429957 + AT_rich Low_complexity Low_complexity 1 35 0 358 255 52 47 chr3 51609257 51609469 -166427689 + L1ME2 LINE L1 5678 5890 -274 2437 75 10 0 chr3 51609659 51609953 -166427205 - AluSg SINE Alu -13 297 1 271 286 135 8 chr3 51610308 51610434 -166426724 - L2 LINE L2 -41 3231 3090 288 312 96 16 chr3 51610441 51610566 -166426592 + MIR SINE MIR 58 192 -70 393 281 41 8 chr3 51611357 51611478 -166425680 + MIR3 SINE MIR 76 200 -8 * 499 300 114 45 chr3 51611465 51611755 -166425403 - L3 LINE CR1 -64 1513 1204 2299 60 42 3 chr3 51615630 51615915 -166421243 - AluY SINE Alu -15 296 1 23 54 0 0 chr3 51616474 51616511 -166420647 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chr3 51618695 51618727 -166418431 + AT_rich Low_complexity Low_complexity 1 32 0 334 275 138 0 chr3 51623322 51623431 -166413727 - MIR3 SINE MIR 0 208 85 2313 120 0 0 chr3 51627553 51627862 -166409296 + AluSx SINE Alu 1 309 -3 24 0 0 0 chr3 51628194 51628218 -166408940 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr3 51629628 51629656 -166407502 + AT_rich Low_complexity Low_complexity 1 28 0 296 291 199 14 chr3 51630267 51630408 -166406750 + L2 LINE L2 2482 2648 -666 505 221 61 15 chr3 51630411 51630542 -166406616 + L2 LINE L2 2593 2729 -585 267 146 0 0 chr3 51630649 51630704 -166406454 + (CA)n Simple_repeat Simple_repeat 2 56 0 501 188 0 0 chr3 51630751 51630900 -166406258 + (CA)n Simple_repeat Simple_repeat 2 150 0 291 136 0 0 chr3 51630915 51630974 -166406184 + (CA)n Simple_repeat Simple_repeat 2 60 0 39 22 0 0 chr3 51631673 51631719 -166405439 + AT_rich Low_complexity Low_complexity 1 46 0 438 281 222 57 chr3 51634146 51635907 -166401251 - L2 LINE L2 -549 2765 714 2023 252 113 17 chr3 51635924 51637025 -166400133 - L2 LINE L2 -4 3309 2093 194 289 36 36 chr3 51637569 51637652 -166399506 + MIR3 SINE MIR 92 174 -34 211 162 0 88 chr3 51640255 51640323 -166396835 + CT-rich Low_complexity Low_complexity 4 65 0 247 278 270 22 chr3 51640696 51641052 -166396106 + L2 LINE L2 2090 2533 -781 478 299 114 0 chr3 51641056 51641223 -166395935 + MER5A DNA MER1_type 4 189 0 246 217 33 0 chr3 51641618 51641678 -166395480 + L2 LINE L2 3171 3232 -40 391 330 98 14 chr3 51643302 51643517 -166393641 - MIR SINE MIR -14 248 16 203 381 45 13 chr3 51643571 51643726 -166393432 + L2 LINE L2 2905 3064 -208 272 161 25 99 chr3 51643771 51643852 -166393306 + MIR3 SINE MIR 107 167 -41 678 211 0 0 chr3 51645931 51646054 -166391104 - FLAM_A SINE Alu -8 125 3 292 302 60 43 chr3 51646143 51646259 -166390899 + MIR3 SINE MIR 69 186 -22 205 86 0 29 chr3 51646619 51646654 -166390504 + (CACCC)n Simple_repeat Simple_repeat 1 34 0 351 0 0 0 chr3 51646659 51646698 -166390460 + (CA)n Simple_repeat Simple_repeat 2 40 0 2158 74 0 61 chr3 51646945 51647256 -166389902 - AluSq SINE Alu -21 292 1 290 298 32 32 chr3 51647454 51647578 -166389580 - MIR SINE MIR -131 131 8 990 247 85 33 chr3 51647786 51648281 -166388877 - L2 LINE L2 -46 3267 2745 1994 160 0 0 chr3 51648283 51648590 -166388568 - AluJo SINE Alu -5 307 1 442 178 7 105 chr3 51648596 51648748 -166388410 - L1MC5 LINE L1 -32 7929 7793 217 164 55 0 chr3 51648762 51648817 -166388341 - L2 LINE L2 -814 2500 2443 238 213 40 0 chr3 51648860 51648935 -166388223 - MIR SINE MIR -66 196 119 1141 237 3 33 chr3 51648977 51649342 -166387816 - L1ME1 LINE L1 -5 6161 5817 1542 103 5 14 chr3 51649393 51649606 -166387552 + AluSx SINE Alu 1 211 -101 537 288 87 18 chr3 51649619 51649848 -166387310 + LTR67 LTR ERVL 5 249 -308 264 335 57 6 chr3 51650112 51650270 -166386888 + ERVL LTR ERVL 1106 1271 -4383 506 302 24 28 chr3 51650432 51650644 -166386514 + ERVL LTR ERVL 1496 1706 -4058 487 310 26 0 chr3 51650635 51650790 -166386368 + ERVL LTR ERVL 4401 4559 -1205 * 548 298 51 41 chr3 51650792 51651107 -166386051 + HAL1 LINE L1 3 320 -2187 548 245 207 8 chr3 51651210 51651447 -166385711 + HAL1 LINE L1 530 813 -1694 2490 88 51 20 chr3 51651451 51651804 -166385354 + THE1B LTR MaLR 1 364 0 3062 191 42 70 chr3 51651830 51652937 -166384221 + L1MD2 LINE L1 3 1140 -5266 294 29 0 0 chr3 51652937 51652972 -166384186 + (TG)n Simple_repeat Simple_repeat 2 36 0 3062 191 42 70 chr3 51652972 51653362 -166383796 + L1MD2 LINE L1 1140 1685 -4721 1636 136 4 51 chr3 51653362 51653635 -166383523 + AluSx SINE Alu 38 297 -15 3062 191 42 70 chr3 51653635 51653742 -166383416 + L1MD2 LINE L1 1685 1793 -4613 2410 232 63 8 chr3 51653742 51654491 -166382667 + L1MD2 LINE L1 4497 5286 -1120 437 222 87 8 chr3 51654471 51654500 -166382658 + L1MB3 LINE L1 4665 4690 -1456 * 1948 154 6 25 chr3 51654500 51654825 -166382333 + 7SLRNA srpRNA srpRNA 1 319 -1 437 222 87 8 chr3 51654825 51654921 -166382237 + L1MB3 LINE L1 4690 4800 -1346 671 143 8 0 chr3 51654922 51655041 -166382117 + MLT2B2 LTR ERVL 2 121 -394 3848 135 44 13 chr3 51655041 51655121 -166382037 + L1MB3 LINE L1 5528 5604 -579 2288 90 7 0 chr3 51655121 51655422 -166381736 + AluY SINE Alu 1 303 -8 3848 135 44 13 chr3 51655422 51655976 -166381182 + L1MB3 LINE L1 5604 6182 -1 3930 200 45 23 chr3 51656051 51657151 -166380007 + L1MD2 LINE L1 5272 6422 -197 306 73 0 0 chr3 51657151 51657192 -166379966 + (CA)n Simple_repeat Simple_repeat 2 42 0 3930 200 45 23 chr3 51657192 51657286 -166379872 + L1MD2 LINE L1 6422 6512 -107 671 161 69 73 chr3 51657286 51657504 -166379654 + MLT1A1 LTR MaLR 1 279 -117 5075 157 48 50 chr3 51657504 51658602 -166378556 - MLT1A1-int LTR MaLR -639 1096 1 1655 156 30 111 chr3 51658602 51658999 -166378159 - MLT1A1 LTR MaLR 0 365 1 3084 171 12 16 chr3 51659074 51659588 -166377570 - MLT2B2 LTR ERVL -3 512 1 650 301 91 35 chr3 51659930 51660059 -166377099 + LTR67 LTR ERVL 9 129 -428 2670 142 86 11 chr3 51660059 51660511 -166376647 + MER66B LTR ERV1 1 486 0 650 301 91 35 chr3 51660511 51660809 -166376349 + LTR67 LTR ERVL 129 460 -97 180 338 14 28 chr3 51660869 51660940 -166376218 - L2 LINE L2 -25 3288 3219 * 335 257 201 14 chr3 51660927 51661071 -166376087 + MIR SINE MIR 17 187 -75 2002 125 3 30 chr3 51661474 51661779 -166375379 - AluSx SINE Alu -14 298 2 586 277 93 48 chr3 51661780 51662156 -166375002 + MLT1I LTR MaLR 17 409 0 201 332 39 82 chr3 51662899 51663107 -166374051 + L2 LINE L2 3024 3222 -50 301 263 25 17 chr3 51666430 51666548 -166370610 + G-rich Low_complexity Low_complexity 4 122 0 270 331 175 13 chr3 51668267 51668421 -166368737 + MIR SINE MIR 28 206 -56 838 294 10 0 chr3 51668976 51669170 -166367988 - MER91A DNA MER1_type 0 196 1 249 290 65 9 chr3 51669545 51669652 -166367506 + MIR3 SINE MIR 87 199 -9 196 239 60 30 chr3 51669686 51669753 -166367405 + L2 LINE L2 2982 3050 -222 237 239 30 15 chr3 51670678 51670745 -166366413 - MER91A DNA MER1_type -128 68 1 210 71 0 0 chr3 51671562 51671590 -166365568 + (TCC)n Simple_repeat Simple_repeat 2 29 0 575 169 0 34 chr3 51671621 51671798 -166365360 + CT-rich Low_complexity Low_complexity 1 171 0 502 264 0 0 chr3 51673027 51673137 -166364021 + MER81 DNA DNA 5 114 0 194 220 40 20 chr3 51674540 51674590 -166362568 - MIR3 SINE MIR -45 163 113 226 238 48 0 chr3 51675806 51675869 -166361289 - MIR SINE MIR -79 129 64 27 81 0 0 chr3 51676367 51676429 -166360729 + GC_rich Low_complexity Low_complexity 1 62 0 32 0 0 0 chr3 51676491 51676523 -166360635 + GC_rich Low_complexity Low_complexity 1 32 0 185 62 0 31 chr3 51676656 51676688 -166360470 + (CCCCAG)n Simple_repeat Simple_repeat 3 33 0 208 343 112 21 chr3 51678626 51678769 -166358389 - L2 LINE L2 -251 3021 2866 456 292 73 28 chr3 51679777 51679955 -166357203 - MIR SINE MIR -72 190 5 1357 209 29 7 chr3 51680331 51680608 -166356550 - AluJo SINE Alu -18 294 12 1019 98 0 0 chr3 51681284 51681417 -166355741 - AluSq/x SINE Alu -180 133 1 1199 175 216 34 chr3 51682772 51683183 -166353975 + MLT1E3 LTR MaLR 139 624 0 727 196 6 6 chr3 51683561 51683740 -166353418 + CT-rich Low_complexity Low_complexity 1 179 0 2135 143 0 0 chr3 51683740 51684047 -166353111 - AluSx SINE Alu -1 311 5 382 183 0 0 chr3 51684049 51684120 -166353038 - MER5A DNA MER1_type -111 78 8 225 241 165 13 chr3 51684170 51684249 -166352909 - L2 LINE L2 -1 3312 3222 1518 197 57 17 chr3 51685793 51686093 -166351065 - AluJb SINE Alu 0 312 1 512 277 102 6 chr3 51686215 51686381 -166350777 - L2 LINE L2 -29 3284 3103 502 229 94 54 chr3 51687313 51687661 -166349497 - LTR16C LTR ERVL 0 491 97 1160 153 19 153 chr3 51687731 51688098 -166349060 - MLT1A1 LTR MaLR 0 365 48 352 248 29 19 chr3 51688125 51688230 -166348928 + MER4A LTR ERV1 15 120 -544 371 153 22 16 chr3 51688308 51688397 -166348761 - MLT1A2 LTR MaLR -13 607 313 * 1679 251 62 66 chr3 51688375 51688627 -166348531 + LTR34 LTR ERV1 104 355 -344 2264 115 66 23 chr3 51688627 51688976 -166348182 + THE1B LTR MaLR 1 364 0 1679 251 62 66 chr3 51688976 51689317 -166347841 + LTR34 LTR ERV1 355 695 -4 329 85 21 0 chr3 51689321 51689368 -166347790 - MLT1A1 LTR MaLR -317 48 1 664 300 89 3 chr3 51689573 51689876 -166347282 - LTR16C LTR ERVL -162 329 1 277 254 45 0 chr3 51689918 51689985 -166347173 + L2 LINE L2 3239 3308 -5 184 250 0 0 chr3 51690063 51690103 -166347055 + MIR SINE MIR 213 252 -10 21 0 0 0 chr3 51690766 51690787 -166346371 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr3 51690976 51691009 -166346149 + (CA)n Simple_repeat Simple_repeat 2 34 0 993 287 69 12 chr3 51691014 51691349 -166345809 - L1MC4a LINE L1 -1887 5921 5568 390 200 42 63 chr3 51691407 51691433 -166345725 + MER20B DNA MER1_type 594 619 -164 2431 131 5 30 chr3 51691433 51691806 -166345352 - THE1B LTR MaLR 0 364 1 390 200 42 63 chr3 51691806 51691863 -166345295 + MER20B DNA MER1_type 619 676 -107 2377 155 131 58 chr3 51691863 51692367 -166344791 - MER67A LTR ERV1 -2 541 1 390 200 42 63 chr3 51692367 51692472 -166344686 + MER20B DNA MER1_type 676 779 -4 546 294 61 19 chr3 51693435 51693649 -166343509 - LTR16C LTR ERVL -21 470 248 306 325 53 40 chr3 51694080 51694231 -166342927 + MIR3 SINE MIR 48 154 -54 1267 301 68 2 chr3 51695005 51695401 -166341757 + LTR16C LTR ERVL 65 486 -5 2006 122 49 81 chr3 51695765 51696150 -166341008 + THE1C LTR MaLR 3 375 0 11175 118 3 37 chr3 51696150 51697786 -166339372 + THE1C-int LTR MaLR 1 1580 0 2134 121 66 33 chr3 51697786 51698149 -166339009 + THE1C LTR MaLR 1 375 0 3786 137 33 13 chr3 51698167 51698766 -166338392 + MER49 LTR ERV1 1 611 -312 44791 42 1 1 chr3 51698783 51704935 -166332223 - L1PA3 LINE L1 0 6155 4 1310 177 3 18 chr3 51704936 51705229 -166331929 + MER49 LTR ERV1 594 923 0 287 244 200 17 chr3 51705239 51705354 -166331804 + MER5A DNA MER1_type 7 142 -47 225 279 136 19 chr3 51705399 51705553 -166331605 - LTR16A1 LTR ERVL -114 343 172 225 163 0 0 chr3 51705930 51705979 -166331179 + (CA)n Simple_repeat Simple_repeat 2 50 0 971 189 12 0 chr3 51706300 51706469 -166330689 + L1PB4 LINE L1 5986 6156 0 2315 111 3 0 chr3 51706490 51706797 -166330361 + AluSx SINE Alu 3 310 -2 205 209 47 0 chr3 51707296 51707339 -166329819 + CT-rich Low_complexity Low_complexity 4 48 0 1494 159 0 9 chr3 51708021 51708254 -166328904 - AluJb SINE Alu -18 294 64 368 351 24 6 chr3 51708348 51708516 -166328642 + MIR SINE MIR 19 189 -73 1344 217 27 116 chr3 51709311 51709562 -166327596 + HsTC2c DNA Tc2 1 190 -1708 1753 124 84 4 chr3 51709562 51709837 -166327321 - AluSg SINE Alu -13 297 1 1344 217 27 116 chr3 51709837 51710069 -166327089 + HsTC2c DNA Tc2 190 441 -1457 2406 175 26 19 chr3 51710069 51710115 -166327043 - MSTB LTR MaLR 0 426 382 2282 137 36 38 chr3 51710115 51710480 -166326678 + THE1B LTR MaLR 1 364 0 2406 175 26 19 chr3 51710480 51710856 -166326302 - MSTB LTR MaLR -44 382 1 1220 245 58 0 chr3 51710856 51711065 -166326093 + HsTC2c DNA Tc2 437 667 -1231 1959 135 27 7 chr3 51711065 51711391 -166325767 - AluSx SINE Alu 0 312 1 1220 245 58 0 chr3 51711391 51711458 -166325700 + HsTC2c DNA Tc2 667 729 0 310 300 140 38 chr3 51711590 51711883 -166325275 + L1MDa LINE L1 405 727 -5994 462 227 133 49 chr3 51712200 51712542 -166324616 + L1MDa LINE L1 1024 1439 -5256 673 148 0 126 chr3 51712557 51712692 -166324466 + FLAM_C SINE Alu 1 118 -15 214 128 21 21 chr3 51712704 51712711 -166324447 + (CAAA)n Simple_repeat Simple_repeat 2 8 -40 1650 208 0 6 chr3 51712711 51713023 -166324135 + AluJo SINE Alu 1 310 -2 214 128 21 21 chr3 51713023 51713062 -166324096 + (CAAA)n Simple_repeat Simple_repeat 7 48 0 848 244 74 14 chr3 51713140 51713357 -166323801 + MIR SINE MIR 12 241 -21 351 0 0 0 chr3 51713801 51713840 -166323318 + (TG)n Simple_repeat Simple_repeat 2 40 0 2563 141 27 43 chr3 51714891 51715330 -166321828 - Tigger2a DNA MER2_type 0 434 3 232 194 16 16 chr3 51715448 51715510 -166321648 + L1MDa LINE L1 1300 1361 -5179 1336 230 23 3 chr3 51715660 51715960 -166321198 + AluJo SINE Alu 1 306 -6 371 309 38 65 chr3 51715979 51716319 -166320839 + HAL1 LINE L1 1271 1601 -906 698 263 53 24 chr3 51717192 51717299 -166319859 + LTR16C LTR ERVL 238 341 -150 1090 172 187 68 chr3 51717299 51717625 -166319533 - MLT1A1 LTR MaLR 0 365 1 698 263 53 24 chr3 51717625 51717764 -166319394 + LTR16C LTR ERVL 341 491 0 249 312 102 54 chr3 51718045 51718250 -166318908 - MLT1I LTR MaLR -127 282 68 2533 126 86 5 chr3 51718901 51719297 -166317861 + MSTA LTR MaLR 1 428 0 185 319 69 0 chr3 51719619 51719691 -166317467 - MIR SINE MIR -76 132 56 606 290 123 76 chr3 51720423 51720885 -166316273 + MLT1K LTR MaLR 99 582 -6 437 244 32 19 chr3 51721755 51721911 -166315247 - L1ME2 LINE L1 -78 6086 5929 201 222 22 22 chr3 51722443 51722488 -166314670 + MIR3 SINE MIR 144 188 -20 2124 108 3 17 chr3 51722536 51722833 -166314325 + AluSx SINE Alu 1 293 -19 497 139 23 23 chr3 51722852 51722938 -166314220 - AluSg/x SINE Alu -10 299 214 375 351 99 0 chr3 51723564 51723715 -166313443 + L2 LINE L2 3107 3272 0 21 57 0 0 chr3 51723868 51723903 -166313255 + AT_rich Low_complexity Low_complexity 1 35 0 415 278 71 82 chr3 51723940 51724318 -166312840 + L1MC4 LINE L1 7378 7751 -291 2126 124 0 3 chr3 51724325 51724623 -166312535 - AluSx SINE Alu -15 297 1 8489 158 44 7 chr3 51724623 51727436 -166309722 - L1M1 LINE L1 -4544 3021 14 1787 223 44 5 chr3 51727436 51727864 -166309294 - MER65A-int LTR ERV1 -789 4082 3604 1027 191 89 102 chr3 51727944 51728321 -166308837 - MER65A-int LTR ERV1 -977 3959 3083 627 173 0 0 chr3 51728321 51728425 -166308733 - AluSg/x SINE Alu -4 308 205 1307 188 0 4 chr3 51728455 51728684 -166308474 - AluJb SINE Alu -84 228 1 1879 157 109 149 chr3 51728685 51728918 -166308240 - MER65A-int LTR ERV1 -1476 4855 4614 1838 168 30 0 chr3 51728918 51729221 -166307937 + AluSx SINE Alu 1 312 0 1879 157 109 149 chr3 51729221 51729740 -166307418 - MER65A-int LTR ERV1 -1717 4614 4076 1951 173 0 0 chr3 51729740 51730041 -166307117 + AluJb SINE Alu 1 301 -11 1879 157 109 149 chr3 51730041 51730415 -166306743 - MER65A-int LTR ERV1 -2255 4076 2477 684 177 113 27 chr3 51730491 51730677 -166306481 - MER65A-int LTR ERV1 -2861 3737 3536 1554 154 22 112 chr3 51730940 51731062 -166306096 - MER65A-int LTR ERV1 -4327 2431 2300 2265 94 0 10 chr3 51731062 51731360 -166305798 - AluY SINE Alu -16 295 1 1554 154 22 112 chr3 51731360 51731952 -166305206 - MER65A-int LTR ERV1 -4458 2300 1621 252 77 0 0 chr3 51731984 51732023 -166305135 - L1PB4 LINE L1 -2 6154 6116 5158 150 16 34 chr3 51732028 51732245 -166304913 - L1PB4 LINE L1 -13 6143 5923 1831 162 0 0 chr3 51732245 51732516 -166304642 - AluSx SINE Alu -18 294 24 5158 150 16 34 chr3 51732516 51733324 -166303834 - L1PB4 LINE L1 -233 5923 5138 2223 68 0 0 chr3 51733324 51733587 -166303571 + AluY SINE Alu 30 292 -19 5158 150 16 34 chr3 51733587 51733648 -166303510 - L1PB4 LINE L1 -1018 5138 5077 335 239 54 0 chr3 51733650 51733742 -166303416 - MER65A-int LTR ERV1 -6483 1637 1541 6244 173 44 30 chr3 51733752 51735146 -166302012 - MER65A-int LTR ERV1 -2346 2525 1187 343 149 138 0 chr3 51735135 51735222 -166301936 - MER65A-int LTR ERV1 -2346 2525 2427 * 764 210 96 87 chr3 51735206 51735330 -166301828 - LTR57-int LTR ERVL -4480 863 414 1619 174 47 12 chr3 51735330 51735652 -166301506 - MER65A-int LTR ERV1 -3678 1193 861 861 152 0 0 chr3 51735713 51735838 -166301320 + AluJb SINE Alu 1 125 -187 1516 227 27 44 chr3 51735878 51736283 -166300875 - MER65A-int LTR ERV1 -4099 772 375 386 323 0 8 chr3 51736348 51736475 -166300683 - MER65A-int LTR ERV1 -4686 185 60 2773 161 11 5 chr3 51736562 51737004 -166300154 - MER65A LTR ERV1 0 445 1 1378 161 53 99 chr3 51737005 51737347 -166299811 + MLT1C LTR MaLR 142 467 0 209 213 0 0 chr3 51737355 51737402 -166299756 + A-rich Low_complexity Low_complexity 1 47 0 348 276 68 25 chr3 51737426 51737589 -166299569 + L1M3 LINE L1 29 198 -6661 2282 110 0 7 chr3 51740196 51740497 -166296661 - AluSx SINE Alu -13 299 1 21 0 0 0 chr3 51741302 51741323 -166295835 + AT_rich Low_complexity Low_complexity 1 21 0 194 268 158 0 chr3 51742100 51742182 -166294976 + MIR SINE MIR 40 134 -128 251 318 142 26 chr3 51742365 51742831 -166294327 + L2 LINE L2 1819 2338 -976 547 307 56 33 chr3 51743176 51743446 -166293712 - LTR16C LTR ERVL -3 488 213 2108 130 0 0 chr3 51743903 51744195 -166292963 - AluSq SINE Alu -21 292 1 21 36 0 0 chr3 51744358 51744386 -166292772 + AT_rich Low_complexity Low_complexity 1 28 0 555 264 51 25 chr3 51744391 51744588 -166292570 - L1ME3A LINE L1 -6 6164 5963 1386 184 28 4 chr3 51745080 51745330 -166291828 + MLT1A1 LTR MaLR 110 365 0 1649 205 66 43 chr3 51745330 51745769 -166291389 - MLT1C LTR MaLR -18 449 1 366 208 61 39 chr3 51746062 51746164 -166290994 + MLT1H LTR MaLR 454 549 0 247 167 0 0 chr3 51746197 51746233 -166290925 + U2 snRNA snRNA 1 36 -152 711 285 107 55 chr3 51746250 51747592 -166289566 + L1M3 LINE L1 3401 4812 -2145 1817 135 0 89 chr3 51747621 51747754 -166289404 + AluJb SINE Alu 6 149 -163 1428 43 0 32 chr3 51747754 51747940 -166289218 + L1PA8 LINE L1 5993 6172 0 1817 135 0 89 chr3 51747940 51748133 -166289025 + AluJb SINE Alu 149 303 -9 2121 143 0 0 chr3 51748137 51748445 -166288713 + AluSq SINE Alu 1 308 -5 267 307 11 11 chr3 51748782 51748870 -166288288 - MER5A DNA MER1_type -1 188 101 369 0 0 0 chr3 51749349 51749390 -166287768 + (CA)n Simple_repeat Simple_repeat 2 42 0 1057 256 98 41 chr3 51749596 51749983 -166287175 - MLT1I LTR MaLR 0 409 1 337 262 19 19 chr3 51750097 51750204 -166286954 - L1ME LINE L1 -477 5644 5538 738 146 73 0 chr3 51750536 51750659 -166286499 - FLAM_C SINE Alu 0 133 2 234 281 61 9 chr3 51751448 51751562 -166285596 - L1ME4a LINE L1 -11 6110 5991 1037 172 6 11 chr3 51751944 51752118 -166285040 + AluJo SINE Alu 86 258 -54 21 0 0 0 chr3 51752132 51752153 -166285005 + AT_rich Low_complexity Low_complexity 1 21 0 1354 225 162 13 chr3 51752593 51752988 -166284170 + MER21B LTR ERV1 1 454 -409 192 351 76 8 chr3 51752990 51753121 -166284037 - L3 LINE CR1 -685 892 753 2383 78 0 33 chr3 51753926 51754232 -166282926 + AluSg SINE Alu 2 297 -13 334 190 76 0 chr3 51754549 51754628 -166282530 - AluJb SINE Alu -155 147 63 301 175 38 38 chr3 51755629 51755709 -166281449 - MER116 DNA Mariner 0 80 1 222 312 54 11 chr3 51756928 51757021 -166280137 + L2 LINE L2 2686 2782 -532 901 157 6 6 chr3 51757271 51757449 -166279709 + GA-rich Low_complexity Low_complexity 3 180 0 280 279 69 82 chr3 51759491 51760000 -166277158 + L1M3 LINE L1 5202 5703 -1254 2233 116 0 0 chr3 51760025 51760326 -166276832 + AluSx SINE Alu 1 301 -11 578 231 29 54 chr3 51760327 51760743 -166276415 + L1M3 LINE L1 5839 6240 -743 2252 122 0 0 chr3 51760743 51761038 -166276120 - AluSx SINE Alu -17 295 1 2170 84 0 44 chr3 51761491 51761787 -166275371 + AluSg SINE Alu 13 295 -15 1293 175 16 29 chr3 51762890 51763136 -166274022 + MER41B LTR ERV1 133 375 -260 2598 57 0 0 chr3 51763445 51763746 -166273412 - AluY SINE Alu -10 301 1 279 54 0 0 chr3 51765664 51765701 -166271457 + (TG)n Simple_repeat Simple_repeat 2 38 0 1610 214 3 3 chr3 51766000 51766425 -166270733 - AluJo SINE Alu 0 427 3 585 208 26 32 chr3 51767212 51767366 -166269792 - MER103 DNA DNA -12 154 2 396 202 42 92 chr3 51767585 51767634 -166269524 - MER94 DNA DNA -19 115 65 2362 101 0 7 chr3 51767634 51767940 -166269218 - AluSx SINE Alu -8 304 1 396 202 42 92 chr3 51767940 51768009 -166269149 - MER94 DNA DNA -69 65 3 2314 165 55 29 chr3 51768637 51769129 -166268029 - MLT1D LTR MaLR 0 505 1 850 228 182 29 chr3 51769761 51770068 -166267090 - LTR16C LTR ERVL -1 490 137 443 226 8 0 chr3 51771615 51771748 -166265410 + CT-rich Low_complexity Low_complexity 3 136 0 16022 116 13 10 chr3 51771943 51773527 -166263631 + Tigger1 DNA MER2_type 1 1597 -821 2251 114 3 0 chr3 51773527 51773826 -166263332 + AluSp SINE Alu 1 300 -13 16022 116 13 10 chr3 51773826 51774595 -166262563 + Tigger1 DNA MER2_type 1597 2362 -56 789 289 11 15 chr3 51776525 51776753 -166260405 + L1M3 LINE L1 6357 6583 -396 281 254 0 16 chr3 51776759 51776822 -166260336 - MER81 DNA DNA -32 82 21 1526 241 77 110 chr3 51776827 51776944 -166260214 - L1MC4a LINE L1 -967 6841 6722 2188 113 3 13 chr3 51776944 51777246 -166259912 - AluSx SINE Alu -13 299 1 1526 241 77 110 chr3 51777246 51778208 -166258950 - L1MC4a LINE L1 -1086 6722 5798 26 50 0 0 chr3 51778338 51778378 -166258780 + AT_rich Low_complexity Low_complexity 1 40 0 1084 167 37 51 chr3 51778406 51778622 -166258536 + AluJb SINE Alu 87 299 -13 1356 121 19 9 chr3 51778623 51778838 -166258320 - L1MC1 LINE L1 -6 6327 6111 1482 256 121 55 chr3 51778894 51779272 -166257886 + L1MC4 LINE L1 6878 7230 -812 2410 139 5 14 chr3 51779272 51779640 -166257518 - MLT1A1 LTR MaLR 0 365 1 1482 256 121 55 chr3 51779640 51780458 -166256700 + L1MC4 LINE L1 7230 8041 -1 344 304 23 32 chr3 51780477 51780698 -166256460 + L1MC4 LINE L1 7037 7252 -790 2755 191 24 69 chr3 51780808 51781206 -166255952 + REP3 LTR ERV 1 415 -147 2453 84 0 7 chr3 51781206 51781515 -166255643 - AluSq SINE Alu 0 313 7 818 154 15 0 chr3 51781520 51781650 -166255508 - FLAM_C SINE Alu -1 132 1 2755 191 24 69 chr3 51781650 51781826 -166255332 + REP3 LTR ERV 419 555 -7 252 273 87 31 chr3 51781944 51782105 -166255053 + L1MC4 LINE L1 7597 7766 -276 270 233 26 3 chr3 51782472 51782548 -166254610 - MLT1H LTR MaLR -272 162 75 285 259 25 12 chr3 51783608 51783689 -166253469 - L2 LINE L2 -5 3308 3227 255 238 48 12 chr3 51784704 51784788 -166252370 - L1ME4a LINE L1 -11 6110 6024 494 268 43 6 chr3 51784853 51785017 -166252141 - MIR SINE MIR -81 181 12 459 184 6 152 chr3 51785140 51785298 -166251860 + MER119 DNA MER1_type 447 581 -2 492 288 60 46 chr3 51785534 51785881 -166251277 - L1ME4a LINE L1 -532 5630 5279 738 214 0 0 chr3 51786778 51786909 -166250249 + FLAM_A SINE Alu 2 132 -1 328 230 74 59 chr3 51787385 51787520 -166249638 + MLT1I LTR MaLR 273 409 0 379 215 0 13 chr3 51787625 51787704 -166249454 + LTR67 LTR ERVL 478 555 -2 320 295 238 8 chr3 51789092 51789214 -166247944 + MIR SINE MIR 32 181 -81 1159 283 61 27 chr3 51789287 51789694 -166247464 - LTR16C LTR ERVL -19 472 52 1957 125 7 13 chr3 51789800 51790103 -166247055 + AluSq SINE Alu 1 301 -12 398 333 0 8 chr3 51791087 51791207 -166245951 - MIR SINE MIR -131 131 13 326 219 19 76 chr3 51791418 51791523 -166245635 + Charlie8 DNA MER1_type 75 173 -2244 1670 135 49 24 chr3 51791698 51791986 -166245172 - AluJb SINE Alu -17 295 1 202 284 78 35 chr3 51792119 51792235 -166244923 + MIR SINE MIR 20 140 -122 273 306 20 10 chr3 51792754 51792852 -166244306 + MIR SINE MIR 132 230 -32 187 299 46 11 chr3 51794088 51794175 -166242983 - MIR SINE MIR -16 246 157 516 209 173 0 chr3 51794388 51794498 -166242660 + Tigger3(Golem) DNA MER2_type 2900 3028 -1 387 0 0 0 chr3 51794501 51794544 -166242614 + (TG)n Simple_repeat Simple_repeat 2 44 0 502 273 36 88 chr3 51795618 51795879 -166241279 - MIR SINE MIR -6 256 16 823 258 121 30 chr3 51795914 51796390 -166240768 - MLT1G1 LTR MaLR -3 592 10 1171 150 24 34 chr3 51796631 51796838 -166240320 + MLT1A2 LTR MaLR 4 208 -166 629 196 149 7 chr3 51796905 51797053 -166240105 + MLT1A2 LTR MaLR 197 365 0 266 313 12 12 chr3 51797144 51797227 -166239931 - MIR SINE MIR -117 145 63 724 137 8 24 chr3 51797439 51797563 -166239595 - MER5A DNA MER1_type -67 122 1 229 208 0 0 chr3 51797777 51797825 -166239333 + MLT1I LTR MaLR 98 145 -264 286 244 15 107 chr3 51797961 51798092 -166239066 + MLT1H LTR MaLR 431 549 0 190 327 0 0 chr3 51798965 51799020 -166238138 - L2 LINE L2 -17 3255 3201 302 291 130 83 chr3 51799354 51799584 -166237574 - MIR SINE MIR -5 257 17 5049 246 100 50 chr3 51799613 51801928 -166235230 + HAL1 LINE L1 77 2506 -1 21 0 0 0 chr3 51802046 51802067 -166235091 + AT_rich Low_complexity Low_complexity 1 21 0 2052 151 11 20 chr3 51802089 51802440 -166234718 + MER7A DNA MER2_type 1 346 0 391 285 45 37 chr3 51802509 51802653 -166234505 + MIR SINE MIR 34 175 -65 1910 186 128 11 chr3 51802718 51802962 -166234196 - MLT1D LTR MaLR 0 505 291 2183 107 0 0 chr3 51802962 51803261 -166233897 - AluSx SINE Alu -9 303 5 1910 186 128 11 chr3 51803261 51803468 -166233690 - MLT1D LTR MaLR -214 291 1 808 223 81 30 chr3 51803541 51803837 -166233321 + L1MC5 LINE L1 7607 7917 -44 440 284 54 54 chr3 51804001 51804149 -166233009 - MIR SINE MIR -62 200 53 192 351 13 13 chr3 51804147 51804224 -166232934 + MIR SINE MIR 154 230 -32 * 2733 277 99 14 chr3 51806369 51807292 -166229866 + ERVL LTR ERVL 3235 4235 -1529 633 65 0 0 chr3 51807407 51807484 -166229674 - AluY SINE Alu -17 294 218 320 223 191 0 chr3 51807500 51807594 -166229564 + ERVL LTR ERVL 4402 4513 -1251 3820 265 154 42 chr3 51808047 51808729 -166228429 - L2 LINE L2 -982 2332 1728 1757 148 23 13 chr3 51808729 51809033 -166228125 - AluJb SINE Alu -5 307 1 3820 265 154 42 chr3 51809033 51810111 -166227047 - L2 LINE L2 -1586 1728 373 252 0 0 0 chr3 51810199 51810227 -166226931 + (CA)n Simple_repeat Simple_repeat 1 28 0 194 266 145 57 chr3 51810385 51810509 -166226649 - MIR3 SINE MIR -63 145 11 455 221 25 33 chr3 51810532 51810654 -166226504 - MER5A DNA MER1_type -25 164 44 2072 120 0 3 chr3 51810654 51810954 -166226204 - AluSx SINE Alu -13 299 1 334 275 116 22 chr3 51811250 51811388 -166225770 + MIR SINE MIR 57 207 -55 340 280 56 35 chr3 51812190 51812333 -166224825 + L1ME4a LINE L1 5766 5911 -210 2001 102 24 7 chr3 51812656 51812950 -166224208 + AluSx SINE Alu 10 308 -4 445 232 58 39 chr3 51813448 51813603 -166223555 + L1ME4a LINE L1 5959 6116 -5 204 196 0 36 chr3 51813864 51813920 -166223238 + (TAA)n Simple_repeat Simple_repeat 2 55 0 243 302 48 51 chr3 51814483 51814620 -166222538 - MIR SINE MIR -77 185 41 21 89 0 0 chr3 51815526 51815582 -166221576 + AT_rich Low_complexity Low_complexity 1 56 0 827 301 61 41 chr3 51815816 51816451 -166220707 + L1MC4a LINE L1 5254 5901 -1907 252 337 65 0 chr3 51816652 51816744 -166220414 - L2 LINE L2 -2 3270 3173 451 147 0 0 chr3 51816754 51816822 -166220336 - MADE1 DNA Mariner 0 80 13 246 108 0 0 chr3 51816822 51816859 -166220299 - MADE1 DNA Mariner -43 37 1 241 26 26 26 chr3 51816886 51816925 -166220233 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 380 277 50 17 chr3 51817262 51817381 -166219777 + MIR SINE MIR 84 206 -56 233 282 13 13 chr3 51817490 51817568 -166219590 - HsTC2 DNA Tc2 -1819 79 2 2042 108 0 20 chr3 51818081 51818377 -166218781 - AluSx SINE Alu -21 291 2 670 269 45 30 chr3 51818581 51818849 -166218309 + L1ME3A LINE L1 3927 4198 -1948 315 287 23 11 chr3 51818917 51819004 -166218154 + L1ME3A LINE L1 5115 5202 -944 958 172 0 0 chr3 51819005 51819168 -166217990 + AluJo SINE Alu 120 282 -30 210 71 0 0 chr3 51819168 51819196 -166217962 + (T)n Simple_repeat Simple_repeat 1 28 0 1739 235 112 5 chr3 51819213 51819851 -166217307 + L1ME3A LINE L1 5188 5894 -276 1815 146 28 3 chr3 51820129 51820296 -166216862 - AluSx SINE Alu -18 294 116 183 42 0 0 chr3 51820296 51820320 -166216838 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1815 146 28 3 chr3 51820320 51820439 -166216719 - AluSx SINE Alu -196 116 1 312 226 173 83 chr3 51820545 51820678 -166216480 + L1ME LINE L1 5575 5719 -402 446 197 79 16 chr3 51821312 51821439 -166215719 - L1MEd LINE L1 -5966 153 19 275 96 19 0 chr3 51821510 51821562 -166215596 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 29 47 0 0 chr3 51821699 51821742 -166215416 + AT_rich Low_complexity Low_complexity 1 43 0 224 281 168 70 chr3 51821812 51821917 -166215241 - MIR SINE MIR -52 210 117 2352 54 0 0 chr3 51821917 51822211 -166214947 - AluY SINE Alu -17 294 1 224 281 168 70 chr3 51822211 51822290 -166214868 - MIR SINE MIR -145 117 8 842 244 25 50 chr3 51822574 51822816 -166214342 + MIR SINE MIR 5 240 -22 216 302 0 0 chr3 51822831 51822884 -166214274 + L2 LINE L2 3261 3313 0 2388 71 0 3 chr3 51823035 51823345 -166213813 + AluY SINE Alu 1 309 -2 310 287 35 11 chr3 51824756 51824843 -166212315 + MIR SINE MIR 57 145 -117 544 214 268 0 chr3 51825632 51825800 -166211358 - MER20 DNA MER1_type 0 219 7 698 243 14 91 chr3 51825947 51826157 -166211001 + MIR SINE MIR 18 211 -51 405 100 0 43 chr3 51826210 51826280 -166210878 + L1PA6 LINE L1 6083 6149 -5 896 304 123 31 chr3 51826374 51827153 -166210005 + L2 LINE L2 2454 3313 0 2237 221 73 32 chr3 51827549 51828114 -166209044 - MLT1E2 LTR MaLR 0 626 39 35 41 0 0 chr3 51828183 51828232 -166208926 + AT_rich Low_complexity Low_complexity 1 49 0 351 303 10 0 chr3 51828779 51828878 -166208280 + MIR3 SINE MIR 88 187 -21 910 225 128 79 chr3 51829235 51829742 -166207416 + MLT1H LTR MaLR 18 549 0 457 297 73 65 chr3 51830602 51830848 -166206310 - MIR SINE MIR -8 254 7 378 260 49 98 chr3 51831004 51831178 -166205980 - L1MEd LINE L1 -5014 1105 957 1942 129 13 16 chr3 51831178 51831509 -166205649 - AluJb SINE Alu 0 312 1 378 260 49 98 chr3 51831509 51831703 -166205455 - L1MEd LINE L1 -5162 957 755 367 321 131 0 chr3 51832141 51832309 -166204849 - MIR SINE MIR 0 262 73 425 200 0 13 chr3 51832559 51832714 -166204444 + GA-rich Low_complexity Low_complexity 1 152 0 382 248 198 25 chr3 51832817 51832863 -166204295 - MLT1K LTR MaLR -23 565 528 351 0 0 0 chr3 51832863 51832902 -166204256 + (CA)n Simple_repeat Simple_repeat 2 40 0 382 248 198 25 chr3 51832902 51833057 -166204101 - MLT1K LTR MaLR -60 528 329 1043 232 82 44 chr3 51834056 51834423 -166202735 + MLT1K LTR MaLR 190 570 -18 760 327 75 20 chr3 51834463 51835008 -166202150 + L1MC4 LINE L1 7299 7873 -169 905 263 65 5 chr3 51835189 51835406 -166201752 + MIR SINE MIR 20 249 -13 310 209 9 29 chr3 51835442 51835547 -166201611 + GA-rich Low_complexity Low_complexity 4 106 0 473 317 138 39 chr3 51836821 51837206 -166199952 + MLT1L LTR MaLR 190 612 -3 376 179 115 0 chr3 51837746 51837824 -166199334 + MER81 DNA DNA 1 87 -27 246 283 283 9 chr3 51838347 51838453 -166198705 - MIR SINE MIR -56 206 72 353 296 49 28 chr3 51838505 51838647 -166198511 + MIR SINE MIR 31 175 -87 496 234 182 26 chr3 51838802 51838956 -166198202 + MER5B DNA MER1_type 1 178 0 521 231 187 0 chr3 51838979 51839113 -166198045 + MER5A DNA MER1_type 31 189 0 438 277 10 0 chr3 51839701 51839802 -166197356 - MER5A DNA MER1_type 0 189 88 308 221 0 26 chr3 51839802 51839879 -166197279 - MLT1K LTR MaLR -373 215 141 228 224 90 15 chr3 51840440 51840507 -166196651 + LTR67 LTR ERVL 108 179 -378 * 759 263 95 62 chr3 51840452 51840810 -166196348 + MLT1K LTR MaLR 131 500 -88 1873 88 0 13 chr3 51840826 51841065 -166196093 + AluSx SINE Alu 64 299 -13 436 167 13 0 chr3 51841065 51841143 -166196015 - MER89 LTR ERV1 -180 379 301 350 150 0 0 chr3 51841195 51841255 -166195903 - MER89 LTR ERV1 -499 60 1 210 167 83 0 chr3 51841290 51841338 -166195820 - L2 LINE L2 -1 3312 3261 26 0 0 0 chr3 51841727 51841753 -166195405 + AT_rich Low_complexity Low_complexity 1 26 0 194 281 125 94 chr3 51842366 51842475 -166194683 + MIR SINE MIR 21 138 -124 1531 137 0 21 chr3 51842475 51842708 -166194450 + AluSg/x SINE Alu 83 310 0 194 281 125 94 chr3 51842708 51842758 -166194400 + MIR SINE MIR 138 185 -77 2064 226 78 60 chr3 51842830 51843506 -166193652 + L1MC5 LINE L1 6991 7691 -270 2175 112 0 0 chr3 51843506 51843827 -166193331 + AluSx SINE Alu 5 325 0 2064 226 78 60 chr3 51843827 51844068 -166193090 + L1MC5 LINE L1 7691 7926 -35 360 0 0 0 chr3 51844598 51844638 -166192520 + (CA)n Simple_repeat Simple_repeat 1 40 0 386 269 10 10 chr3 51846558 51846662 -166190496 - MER5A DNA MER1_type -80 109 6 461 221 189 0 chr3 51846701 51846823 -166190335 - MER3 DNA MER1_type -60 149 5 1742 202 14 19 chr3 51846848 51847210 -166189948 + MLT1A1 LTR MaLR 6 365 0 864 205 0 0 chr3 51847652 51847818 -166189340 - LTR16A LTR ERVL -35 415 250 1896 245 39 5 chr3 51848040 51848472 -166188686 + LTR16A LTR ERVL 2 448 -2 470 264 29 13 chr3 51848967 51849126 -166188032 - L1MA9 LINE L1 -6 6294 6131 1906 191 73 39 chr3 51849130 51849595 -166187563 + MLT1H1 LTR MaLR 27 507 -48 225 367 101 13 chr3 51849979 51850137 -166187021 - MIR3 SINE MIR -36 172 1 277 208 0 0 chr3 51850198 51850246 -166186912 + L1ME3 LINE L1 5524 5571 -591 2241 179 78 22 chr3 51850250 51850752 -166186406 + L1ME3 LINE L1 5632 6161 -1 252 0 0 0 chr3 51850779 51850807 -166186351 + (CA)n Simple_repeat Simple_repeat 2 29 0 400 174 255 0 chr3 51850898 51850996 -166186162 - FLAM_A SINE Alu -13 129 7 22 0 0 0 chr3 51851047 51851069 -166186089 + AT_rich Low_complexity Low_complexity 1 22 0 2496 168 37 72 chr3 51853321 51853456 -166183702 + MER74A LTR ERVL 6 144 -414 1865 106 60 63 chr3 51853456 51853758 -166183400 + AluSx SINE Alu 11 311 -1 2496 168 37 72 chr3 51853758 51854195 -166182963 + MER74A LTR ERVL 144 558 0 1126 115 27 215 chr3 51854367 51854579 -166182579 + L1MB8 LINE L1 5786 6036 -142 1711 178 0 3 chr3 51854579 51854866 -166182292 + AluJb SINE Alu 23 308 -4 2239 106 14 0 chr3 51854866 51855158 -166182000 + AluSq SINE Alu 1 296 -17 1126 115 27 215 chr3 51855158 51855354 -166181804 + L1MB8 LINE L1 6034 6118 -60 413 273 118 12 chr3 51855417 51855578 -166181580 + MIR SINE MIR 36 213 -49 502 250 98 18 chr3 51855682 51855846 -166181312 - L2 LINE L2 -3 3310 3134 2194 133 0 0 chr3 51857425 51857726 -166179432 + AluSx SINE Alu 1 301 -11 599 155 0 0 chr3 51857726 51857829 -166179329 - MER53 DNA DNA -86 103 1 699 243 30 116 chr3 51858172 51858440 -166178718 - MIR SINE MIR 0 262 18 863 280 115 36 chr3 51858459 51858910 -166178248 - MLT1J LTR MaLR 0 511 1 1895 215 28 50 chr3 51859070 51859605 -166177553 - L1ME2 LINE L1 -134 6030 5508 1788 176 14 0 chr3 51862201 51862485 -166174673 + AluJo SINE Alu 1 288 -24 2210 80 0 0 chr3 51862704 51862968 -166174190 + AluSc SINE Alu 33 296 -13 288 260 101 26 chr3 51864731 51864910 -166172248 + MIR SINE MIR 2 188 -65 357 261 171 18 chr3 51867134 51867356 -166169802 + L1ME2 LINE L1 5272 5512 -654 362 113 0 0 chr3 51867409 51867462 -166169696 + MLT1B LTR MaLR 1 53 -337 * 425 169 36 0 chr3 51867453 51867536 -166169622 + MLT1B LTR MaLR 305 390 0 372 329 155 12 chr3 51867548 51867800 -166169358 + L1ME2 LINE L1 5596 5883 -281 239 241 234 7 chr3 51868595 51868736 -166168422 + L3 LINE CR1 1301 1473 -104 446 198 180 0 chr3 51869405 51869516 -166167642 + L2 LINE L2 3137 3267 -5 1179 164 10 43 chr3 51870642 51870849 -166166309 - AluJb SINE Alu -29 283 84 789 271 99 18 chr3 51871652 51871936 -166165222 + MLT1L LTR MaLR 201 507 -108 882 156 43 21 chr3 51872064 51872250 -166164908 + MER96B DNA MER1_type? 3 192 -225 303 328 9 0 chr3 51872321 51872437 -166164721 + MIR SINE MIR 21 137 -71 194 326 41 68 chr3 51874482 51874629 -166162529 - MIR3 SINE MIR -32 176 34 285 29 0 0 chr3 51874706 51874740 -166162418 + (GA)n Simple_repeat Simple_repeat 2 35 0 2343 107 0 3 chr3 51874846 51875146 -166162012 + AluSx SINE Alu 1 299 -13 473 309 10 62 chr3 51878159 51878353 -166158805 - MER5A DNA MER1_type -2 187 4 241 282 155 0 chr3 51880939 51881042 -166156116 + MIR SINE MIR 114 232 -30 232 370 28 0 chr3 51881126 51881234 -166155924 - L2 LINE L2 -3 3269 3159 284 333 48 27 chr3 51881814 51881961 -166155197 + MIR3 SINE MIR 1 150 -58 229 257 0 79 chr3 51882378 51882479 -166154679 + GA-rich Low_complexity Low_complexity 6 98 0 294 278 89 11 chr3 51882549 51882639 -166154519 + MER91A DNA MER1_type 100 196 0 228 303 0 0 chr3 51883273 51883382 -166153776 + (TCCA)n Simple_repeat Simple_repeat 1 109 0 274 271 13 0 chr3 51883422 51883573 -166153585 + (TCCA)n Simple_repeat Simple_repeat 1 153 0 210 349 8 31 chr3 51883575 51883704 -166153454 + (CCTA)n Simple_repeat Simple_repeat 1 126 0 204 338 0 14 chr3 51883830 51883904 -166153254 + G-rich Low_complexity Low_complexity 5 77 0 2210 107 0 41 chr3 51884354 51884671 -166152487 - AluSg SINE Alu -6 304 1 274 210 320 0 chr3 51885325 51885425 -166151733 - MIR3 SINE MIR -18 190 59 193 95 24 24 chr3 51885609 51885651 -166151507 + (GGGAGA)n Simple_repeat Simple_repeat 1 42 0 256 295 0 0 chr3 51888781 51888859 -166148299 + (CACCAT)n Simple_repeat Simple_repeat 4 81 0 408 308 108 5 chr3 51888864 51889049 -166148109 - MIR SINE MIR -18 244 41 251 268 79 55 chr3 51889188 51889315 -166147843 - MIR SINE MIR -26 236 107 2184 123 3 0 chr3 51889728 51890021 -166147137 + AluSg SINE Alu 1 294 -16 288 0 0 0 chr3 51890202 51890234 -166146924 + (TG)n Simple_repeat Simple_repeat 2 33 0 403 254 32 16 chr3 51890282 51890408 -166146750 - MIR SINE MIR -103 159 32 2303 91 14 0 chr3 51891432 51891728 -166145430 + AluY SINE Alu 1 300 -11 198 0 0 0 chr3 51891728 51891750 -166145408 + (TA)n Simple_repeat Simple_repeat 2 23 0 2087 132 0 0 chr3 51891804 51892093 -166145065 + AluSg SINE Alu 20 308 -2 467 255 172 13 chr3 51892462 51892619 -166144539 + MER91A DNA MER1_type 1 182 -14 231 216 35 6 chr3 51893032 51893101 -166144057 - MIR SINE MIR -31 177 104 370 292 182 41 chr3 51893165 51893980 -166143178 + L2 LINE L2 2358 3290 -23 2294 227 93 35 chr3 51894818 51895086 -166142072 + MER20B DNA MER1_type 4 255 -528 2273 112 23 0 chr3 51895086 51895390 -166141768 - AluSx SINE Alu -1 311 1 2294 227 93 35 chr3 51895390 51895816 -166141342 + MER20B DNA MER1_type 255 739 -44 2243 87 0 7 chr3 51895878 51896155 -166141003 - AluSx SINE Alu -37 275 1 180 77 0 0 chr3 51896512 51896538 -166140620 + (CAGCC)n Simple_repeat Simple_repeat 3 28 0 500 245 227 0 chr3 51896917 51897080 -166140078 - MIR SINE MIR 0 262 63 282 319 24 0 chr3 51897757 51897923 -166139235 + (CA)n Simple_repeat Simple_repeat 1 170 0 366 23 0 0 chr3 51899264 51899307 -166137851 + (TG)n Simple_repeat Simple_repeat 1 43 0 878 309 107 38 chr3 51902274 51902805 -166134353 + MLT1K LTR MaLR 10 577 -11 359 338 60 13 chr3 51903572 51903899 -166133259 - L2 LINE L2 -251 3021 2682 206 250 33 0 chr3 51905071 51905131 -166132027 + GA-rich Low_complexity Low_complexity 1 62 0 508 231 8 8 chr3 51905245 51905362 -166131796 + L1ME3 LINE L1 6018 6134 -28 351 227 267 40 chr3 51905444 51905594 -166131564 + MIR SINE MIR 7 190 -72 231 36 0 0 chr3 51905871 51905899 -166131259 + (T)n Simple_repeat Simple_repeat 1 28 0 462 249 78 44 chr3 51906667 51906960 -166130198 + L1MC5 LINE L1 7629 7931 -30 2198 136 0 3 chr3 51907027 51907337 -166129821 + AluSx SINE Alu 1 309 -3 209 270 103 48 chr3 51908022 51908148 -166129010 - MIR3 SINE MIR -54 154 22 243 88 0 0 chr3 51908919 51908953 -166128205 + (T)n Simple_repeat Simple_repeat 1 34 0 215 227 53 53 chr3 51910123 51910198 -166126960 + MIR3 SINE MIR 111 185 -23 27 0 0 0 chr3 51911132 51911159 -166125999 + GC_rich Low_complexity Low_complexity 1 27 0 228 295 0 26 chr3 51912061 51912139 -166125019 - MIR3 SINE MIR -24 184 109 289 336 19 0 chr3 51912670 51912774 -166124384 + CT-rich Low_complexity Low_complexity 1 106 0 291 282 0 0 chr3 51912809 51912887 -166124271 - L2 LINE L2 -2 3270 3193 192 356 10 19 chr3 51914830 51914934 -166122224 - L3 LINE CR1 -123 1454 1352 454 275 21 37 chr3 51915334 51915525 -166121633 - LTR16B LTR ERVL 0 464 206 2069 122 64 9 chr3 51915932 51916277 -166120881 - THE1B LTR MaLR 0 364 1 261 209 0 0 chr3 51916375 51916442 -166120716 + (TG)n Simple_repeat Simple_repeat 1 67 0 367 297 125 10 chr3 51917141 51917333 -166119825 + L1M4 LINE L1 2355 2568 -3578 1827 68 36 0 chr3 51917618 51917840 -166119318 - AluSx SINE Alu -21 291 62 1177 226 130 91 chr3 51917840 51918370 -166118788 - MLT1E LTR MaLR -42 551 1 323 293 60 30 chr3 51918419 51918436 -166118722 + L1MC4 LINE L1 7897 7912 -130 2335 95 0 0 chr3 51918436 51918731 -166118427 + AluY SINE Alu 1 295 -16 323 293 60 30 chr3 51918731 51918846 -166118312 + L1MC4 LINE L1 7912 8033 -9 321 301 130 12 chr3 51918909 51919418 -166117740 + L1M4 LINE L1 2900 3468 -2678 21 71 0 0 chr3 51919603 51919645 -166117513 + AT_rich Low_complexity Low_complexity 1 42 0 357 224 54 20 chr3 51921606 51921753 -166115405 + GA-rich Low_complexity Low_complexity 2 153 0 2008 147 0 0 chr3 51921982 51922261 -166114897 + AluSx SINE Alu 1 279 -33 247 65 43 0 chr3 51922263 51922309 -166114849 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 549 239 137 84 chr3 51922311 51922821 -166114337 - L1MC5 LINE L1 -55 7906 7370 252 289 136 29 chr3 51922887 51923199 -166113959 + L2 LINE L2 2793 3156 -157 1431 237 150 22 chr3 51924339 51924787 -166112371 + MLT1K LTR MaLR 76 580 -8 2144 168 65 20 chr3 51925479 51925926 -166111232 - MLT1C LTR MaLR 0 467 1 1767 256 62 14 chr3 51925926 51926410 -166110748 - MLT1F LTR MaLR -7 535 29 727 245 47 24 chr3 51926430 51926642 -166110516 - MLT1J LTR MaLR -243 268 52 440 264 0 9 chr3 51926642 51926748 -166110410 - LTR16C LTR ERVL 0 491 387 284 139 167 14 chr3 51927705 51927777 -166109381 - Charlie4a DNA MER1_type 0 508 426 543 126 19 0 chr3 51927782 51927885 -166109273 - L1PB2 LINE L1 0 6151 6047 14686 193 20 12 chr3 51927885 51930628 -166106530 - L1P5 LINE L1 -467 6400 3680 2257 130 0 0 chr3 51930628 51930927 -166106231 - AluSx SINE Alu -13 299 1 14686 193 20 12 chr3 51930927 51934260 -166102898 - L1P5 LINE L1 -3187 3680 18 1703 215 36 5 chr3 51934260 51934679 -166102479 - Charlie4a DNA MER1_type -53 455 24 975 257 51 20 chr3 51935862 51936202 -166100956 - LTR16C LTR ERVL -8 483 72 914 191 59 20 chr3 51937828 51938032 -166099126 + MIR SINE MIR 51 262 0 1535 183 31 109 chr3 51938126 51938547 -166098611 - MLT1E LTR MaLR 0 593 206 250 308 18 3 chr3 51939238 51939366 -166097792 - MIR SINE MIR -63 145 23 189 195 0 146 chr3 51940833 51940915 -166096243 + MIR SINE MIR 82 151 -57 1477 195 65 18 chr3 51941395 51941672 -166095486 + AluJo SINE Alu 1 290 -22 1219 185 59 21 chr3 51941781 51942019 -166095139 + AluJb SINE Alu 1 247 -65 449 174 0 12 chr3 51942019 51942105 -166095053 - L1MC4a LINE L1 -501 7307 7223 251 200 0 0 chr3 51942121 51942171 -166094987 - Alu SINE Alu -1 301 252 2269 83 0 4 chr3 51942219 51942497 -166094661 + AluSc SINE Alu 18 294 -15 482 283 61 0 chr3 51942502 51942700 -166094458 - L1MEc LINE L1 -1822 5135 4926 357 190 15 16 chr3 51942700 51942810 -166094348 + L1MC4 LINE L1 1995 6983 -1339 200 677 0 6 chr3 51942815 51942976 -166094182 + (TA)n Simple_repeat Simple_repeat 1 160 0 554 107 71 0 chr3 51942976 51943060 -166094098 - AluSg/x SINE Alu -5 305 216 314 107 250 0 chr3 51943060 51943116 -166094042 + AluJ/FLAM SINE Alu 31 100 -202 1746 249 2 30 chr3 51943193 51943400 -166093758 - L1MEc LINE L1 -2275 4682 4471 2030 139 3 40 chr3 51943400 51943724 -166093434 - AluSx SINE Alu 0 312 1 1746 249 2 30 chr3 51943724 51944014 -166093144 - L1MEc LINE L1 -2486 4471 4199 1145 231 28 8 chr3 51944407 51944767 -166092391 - L1MEc LINE L1 -2848 4109 3743 348 218 0 0 chr3 51944779 51944866 -166092292 + (TG)n Simple_repeat Simple_repeat 2 88 0 1218 173 62 0 chr3 51944867 51945075 -166092083 - AluJb SINE Alu -14 298 78 1289 82 29 0 chr3 51945075 51945245 -166091913 - MER30 DNA MER1_type -55 175 1 1934 231 70 11 chr3 51945246 51945835 -166091323 - L1MEc LINE L1 -3417 3540 2924 2190 125 133 18 chr3 51945835 51946219 -166090939 - MSTA LTR MaLR 0 428 1 1934 231 70 11 chr3 51946219 51946267 -166090891 - L1MEc LINE L1 -4033 2924 2880 * 4894 147 6 30 chr3 51946237 51946733 -166090425 - L1PB4 LINE L1 0 6967 6498 1836 143 31 21 chr3 51946733 51947019 -166090139 - AluJo SINE Alu -17 295 7 4894 147 6 30 chr3 51947019 51947365 -166089793 - L1PB4 LINE L1 -469 6498 6145 2375 77 7 0 chr3 51947366 51947651 -166089507 + AluY SINE Alu 1 287 -24 5676 82 9 5 chr3 51947684 51948455 -166088703 - L1MA2 LINE L1 -6 6298 5525 2014 149 7 3 chr3 51948472 51948768 -166088390 - AluSx SINE Alu -15 297 1 1680 206 10 0 chr3 51948774 51949070 -166088088 - AluJb SINE Alu -13 299 1 2764 160 34 32 chr3 51949070 51949659 -166087499 - L1PB4 LINE L1 -2357 3789 3200 717 184 0 37 chr3 51949659 51949795 -166087363 - FLAM_C SINE Alu -2 131 1 248 197 70 14 chr3 51949795 51949866 -166087292 - L1MEc LINE L1 -6414 543 469 16051 132 30 11 chr3 51953421 51955901 -166081257 + Tigger2 DNA MER2_type 190 2718 0 540 235 40 20 chr3 51956488 51956637 -166080521 - L1MEc LINE L1 -6692 167 16 * 3092 228 134 12 chr3 51956629 51957214 -166079944 + L1MEc LINE L1 1966 2478 -3737 2187 201 53 16 chr3 51957214 51957701 -166079457 - MLT1D LTR MaLR 0 505 1 3092 228 134 12 chr3 51957701 51958435 -166078723 + L1MEc LINE L1 2478 3391 -2824 640 161 89 5 chr3 51958514 51958638 -166078520 - MLT1C LTR MaLR 0 467 356 3675 104 100 12 chr3 51958638 51959206 -166077952 + THE1C-int LTR MaLR 963 1580 0 1970 133 53 58 chr3 51959206 51959583 -166077575 + THE1C LTR MaLR 1 375 0 1687 172 6 24 chr3 51959815 51960146 -166077012 + L1PA15-16 LINE L1 2546 2870 -3979 1593 187 22 50 chr3 51960210 51960531 -166076627 + AluJb SINE Alu 1 312 0 535 249 100 100 chr3 51960756 51961121 -166076037 - MLT1J1 LTR MaLR -22 424 57 1804 123 0 0 chr3 51961121 51961356 -166075802 + AluSx SINE Alu 5 239 -73 535 249 100 100 chr3 51961356 51961379 -166075779 - MLT1J1 LTR MaLR -388 58 36 194 116 163 0 chr3 51961509 51961552 -166075606 + L2 LINE L2 3262 3311 -2 2224 138 18 9 chr3 51961760 51962100 -166075058 + MER61A LTR ERV1 1 343 0 1384 236 77 29 chr3 51962336 51962780 -166074378 + L1ME2 LINE L1 5678 6142 -22 368 207 49 12 chr3 51962999 51963081 -166074077 + MLT1L LTR MaLR 168 252 -363 305 176 40 27 chr3 51963197 51963271 -166073887 + MIR SINE MIR 111 185 -77 296 280 20 30 chr3 51963274 51963374 -166073784 - L2 LINE L2 -2 3311 3213 2884 3 0 0 chr3 51963429 51963731 -166073427 - AluYa5 SINE Alu -9 302 1 1580 178 80 30 chr3 51963778 51964178 -166072980 - LTR37A LTR ERV1 0 426 7 1300 248 108 68 chr3 51964629 51964742 -166072416 - MER67B LTR ERV1 -13 648 541 2949 9 0 3 chr3 51964742 51965061 -166072097 - AluYb8 SINE Alu 0 318 1 1300 248 108 68 chr3 51965061 51965568 -166071590 - MER67B LTR ERV1 -120 541 3 470 207 0 0 chr3 51965568 51965644 -166071514 - MER67A LTR ERV1 -460 83 8 1822 156 9 19 chr3 51965646 51965961 -166071197 + AluJo SINE Alu 1 312 0 735 217 244 11 chr3 51966033 51966397 -166070761 - LTR16A1 LTR ERVL 0 457 9 3698 102 24 3 chr3 51967162 51967950 -166069208 + MER4D LTR ERV1 1 859 -13 1856 132 81 31 chr3 51967950 51968307 -166068851 - THE1C LTR MaLR 0 375 1 3925 132 10 34 chr3 51968307 51968624 -166068534 - THE1C-int LTR MaLR 0 1580 1257 393 22 0 0 chr3 51968624 51968670 -166068488 + (TG)n Simple_repeat Simple_repeat 1 46 0 * 396 0 0 0 chr3 51968669 51968713 -166068445 + (GA)n Simple_repeat Simple_repeat 1 44 0 3925 132 10 34 chr3 51968670 51968714 -166068444 - THE1C-int LTR MaLR -323 1257 1213 1742 124 49 15 chr3 51968714 51968980 -166068178 - AluSx SINE Alu -37 275 1 3925 132 10 34 chr3 51968980 51969283 -166067875 - THE1C-int LTR MaLR -367 1213 973 1788 167 67 22 chr3 51969296 51969655 -166067503 - THE1C LTR MaLR 0 375 1 214 355 55 0 chr3 51970009 51970119 -166067039 + MIR SINE MIR 22 137 -125 807 223 40 32 chr3 51970193 51970444 -166066714 - MIR SINE MIR -6 256 4 1974 215 28 50 chr3 51971195 51971730 -166065428 + L1ME2 LINE L1 5508 6030 -134 884 280 115 36 chr3 51971890 51972341 -166064817 + MLT1J LTR MaLR 1 511 0 650 271 30 30 chr3 51972360 51972559 -166064599 + MIR SINE MIR 18 216 -46 634 155 0 0 chr3 51972971 51973074 -166064084 + MER53 DNA DNA 1 103 -86 2171 130 0 0 chr3 51973074 51973374 -166063784 - AluSx SINE Alu -12 300 1 477 225 78 21 chr3 51974975 51975117 -166062041 + L2 LINE L2 3161 3310 -3 373 269 129 14 chr3 51975221 51975382 -166061776 - MIR SINE MIR -49 213 37 1186 111 26 226 chr3 51975445 51975641 -166061517 - L1MB8 LINE L1 -60 6118 5885 2210 106 14 0 chr3 51975641 51975933 -166061225 - AluSq SINE Alu -17 296 1 1664 174 0 3 chr3 51975933 51976215 -166060943 - AluJb SINE Alu -3 309 29 1186 111 26 226 chr3 51976215 51976433 -166060725 - L1MB8 LINE L1 -291 5887 5786 2618 163 39 72 chr3 51976605 51977042 -166060116 - MER74A LTR ERVL 0 558 143 1806 105 61 65 chr3 51977042 51977336 -166059822 - AluSx SINE Alu -9 303 11 2618 163 39 72 chr3 51977336 51977470 -166059688 - MER74A LTR ERVL -415 143 6 22 0 0 0 chr3 51979722 51979744 -166057414 + AT_rich Low_complexity Low_complexity 1 22 0 418 163 255 0 chr3 51979795 51979893 -166057265 + FLAM_A SINE Alu 7 129 -13 216 0 0 0 chr3 51979984 51980008 -166057150 + (TG)n Simple_repeat Simple_repeat 2 25 0 2388 177 78 22 chr3 51980035 51980537 -166056621 - L1ME3 LINE L1 -1 6161 5632 287 208 0 0 chr3 51980541 51980589 -166056569 - L1ME3 LINE L1 -599 5571 5524 197 367 101 13 chr3 51980650 51980808 -166056350 + MIR3 SINE MIR 1 172 -36 1947 190 75 39 chr3 51981192 51981656 -166055502 - MLT1H1 LTR MaLR -48 507 27 488 263 29 13 chr3 51981660 51981819 -166055339 + L1MA9 LINE L1 6131 6294 -6 1886 236 42 9 chr3 51982314 51982747 -166054411 - LTR16A LTR ERVL -2 448 2 880 205 0 0 chr3 51982969 51983135 -166054023 + LTR16A LTR ERVL 250 415 -35 1658 222 14 17 chr3 51983577 51983938 -166053220 - MLT1A1 LTR MaLR 0 365 6 477 221 189 0 chr3 51983963 51984085 -166053073 + MER3 DNA MER1_type 5 149 -60 361 269 10 10 chr3 51984124 51984228 -166052930 + MER5A DNA MER1_type 6 109 -80 387 0 0 0 chr3 51986149 51986192 -166050966 + (TG)n Simple_repeat Simple_repeat 2 44 0 382 168 9 35 chr3 51986195 51986308 -166050850 + CT-rich Low_complexity Low_complexity 5 114 0 379 257 0 34 chr3 51986326 51986474 -166050684 + T-rich Low_complexity Low_complexity 1 143 0 281 263 0 8 chr3 51986494 51986627 -166050531 + CT-rich Low_complexity Low_complexity 4 135 0 1957 153 0 3 chr3 51987093 51987393 -166049765 - AluJb SINE Alu -13 299 1 22 70 0 0 chr3 51989129 51989172 -166047986 + AT_rich Low_complexity Low_complexity 1 43 0 1186 145 0 11 chr3 51989177 51989356 -166047802 + AluJb SINE Alu 121 297 -15 3742 134 54 5 chr3 51989358 51989972 -166047186 - L1MB2 LINE L1 -21 6150 5507 180 77 0 0 chr3 51990404 51990430 -166046728 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1105 138 0 0 chr3 51990432 51990591 -166046567 - AluSg/x SINE Alu -30 282 124 2454 96 0 0 chr3 51991696 51992008 -166045150 + AluSx SINE Alu 1 312 0 2258 99 24 0 chr3 51992070 51992363 -166044795 + AluSp SINE Alu 1 300 -13 351 0 0 0 chr3 51992363 51992402 -166044756 + (CA)n Simple_repeat Simple_repeat 2 40 0 1608 176 0 53 chr3 51993061 51993380 -166043778 - AluJo SINE Alu -10 302 1 2481 83 0 3 chr3 51993393 51993705 -166043453 - AluSp SINE Alu -2 311 1 772 161 50 50 chr3 51993810 51993971 -166043187 + MER6A DNA MER2_type 1 161 -444 21 0 0 0 chr3 51994239 51994260 -166042898 + AT_rich Low_complexity Low_complexity 1 21 0 2114 77 0 21 chr3 51994492 51994802 -166042356 + AluSg SINE Alu 2 305 0 729 221 53 16 chr3 51994898 51995088 -166042070 - MER3 DNA MER1_type -12 197 1 2350 70 3 0 chr3 51995694 51995993 -166041165 + AluSp SINE Alu 1 300 -13 2147 72 41 3 chr3 51996731 51997023 -166040135 - AluY SINE Alu -8 303 1 198 171 0 0 chr3 51998193 51998234 -166038924 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 400 265 59 10 chr3 51998279 51998381 -166038777 + MIR SINE MIR 5 111 -151 751 145 7 0 chr3 51998500 51998638 -166038520 + L1MA7 LINE L1 6153 6291 0 430 355 110 23 chr3 51999708 52000353 -166036805 + L2 LINE L2 1543 2243 -1071 224 209 0 0 chr3 52000726 52000769 -166036389 + (CA)n Simple_repeat Simple_repeat 2 44 0 431 238 63 32 chr3 52001882 52002008 -166035150 + L2 LINE L2 2215 2344 -970 606 249 43 63 chr3 52002055 52002308 -166034850 + MLT1H LTR MaLR 51 298 -251 258 324 108 0 chr3 52002535 52002637 -166034521 + L2 LINE L2 2643 2755 -559 195 69 0 0 chr3 52002981 52003010 -166034148 + (TG)n Simple_repeat Simple_repeat 2 30 0 2117 107 3 0 chr3 52003415 52003713 -166033445 + AluSq SINE Alu 1 299 -14 1700 174 0 7 chr3 52003910 52004203 -166032955 + AluJo SINE Alu 1 291 -21 649 296 206 5 chr3 52004826 52004881 -166032277 - L2 LINE L2 -91 3222 3179 2056 126 0 7 chr3 52004881 52005190 -166031968 + AluSx SINE Alu 1 307 -5 649 296 206 5 chr3 52005190 52005553 -166031605 - L2 LINE L2 -134 3179 2717 387 0 0 0 chr3 52006022 52006065 -166031093 + (CA)n Simple_repeat Simple_repeat 1 43 0 317 228 26 26 chr3 52007636 52007750 -166029408 + L1MC4 LINE L1 3871 3984 -2162 433 269 173 19 chr3 52007768 52007976 -166029182 + L1MC4 LINE L1 5726 5965 -2077 419 315 56 25 chr3 52008201 52008398 -166028760 + L2 LINE L2 2356 2558 -756 527 309 77 25 chr3 52008940 52009341 -166027817 + L1MC4 LINE L1 5257 5678 -2130 1271 119 0 0 chr3 52009359 52009536 -166027622 + AluJb SINE Alu 121 297 -15 484 344 48 44 chr3 52009673 52009900 -166027258 + L1MEd LINE L1 530 757 -5362 2009 110 10 13 chr3 52010022 52010330 -166026828 - AluSq SINE Alu -6 307 1 298 252 136 53 chr3 52010350 52010556 -166026602 + L1MEd LINE L1 947 1169 -4950 302 274 22 111 chr3 52010611 52010746 -166026412 - L1MC4 LINE L1 -1315 6727 6605 292 192 77 13 chr3 52010747 52010825 -166026333 + L1MC4 LINE L1 6614 6696 -1346 * 443 278 77 44 chr3 52010820 52011078 -166026080 + L1MEd LINE L1 1321 1595 -4715 2131 111 0 0 chr3 52011078 52011415 -166025743 + AluSx SINE Alu 1 337 0 443 278 77 44 chr3 52011415 52011493 -166025665 + L1MEd LINE L1 1595 1669 -4641 3379 168 47 22 chr3 52011838 52012308 -166024850 + L1MB4 LINE L1 5478 5972 -208 2036 125 7 0 chr3 52012308 52012603 -166024555 + AluSq SINE Alu 1 297 -16 3379 168 47 22 chr3 52012603 52012817 -166024341 + L1MB4 LINE L1 5972 6179 -1 1051 231 33 12 chr3 52012826 52013069 -166024089 - MLT1E3 LTR MaLR -54 570 323 4236 89 5 2 chr3 52013204 52013756 -166023402 + MER41A LTR ERV1 1 554 0 354 91 338 13 chr3 52013842 52013919 -166023239 + MER41A-int LTR ERV1 1 102 -5844 4194 115 13 28 chr3 52013928 52014546 -166022612 + MER41A-int LTR ERV1 1 609 -5337 357 24 0 0 chr3 52014547 52014589 -166022569 + (TC)n Simple_repeat Simple_repeat 2 43 0 9603 128 51 35 chr3 52014599 52017002 -166020156 + MER41A-int LTR ERV1 2565 4145 -870 4179 56 29 2 chr3 52016995 52017512 -166019646 + MER41A-int LTR ERV1 5414 5944 -2 * 4301 78 0 23 chr3 52017513 52017954 -166019204 + MER41A LTR ERV1 1 428 -126 2365 62 3 3 chr3 52017954 52018259 -166018899 - AluY SINE Alu -6 305 1 4301 78 0 23 chr3 52018259 52018384 -166018774 + MER41A LTR ERV1 428 554 0 785 261 64 0 chr3 52018399 52018617 -166018541 - MLT1E3 LTR MaLR -322 332 101 252 59 0 0 chr3 52018793 52018827 -166018331 + (TG)n Simple_repeat Simple_repeat 1 34 0 188 284 167 0 chr3 52020308 52020410 -166016748 - MIR SINE MIR -55 153 35 186 43 0 0 chr3 52021096 52021119 -166016039 + (GGA)n Simple_repeat Simple_repeat 1 23 0 235 200 0 0 chr3 52021129 52021174 -166015984 + (AGCGG)n Simple_repeat Simple_repeat 3 47 0 232 365 29 0 chr3 52022469 52022573 -166014585 - MIR SINE MIR -58 204 98 202 301 43 27 chr3 52022707 52022860 -166014298 + MIR SINE MIR 56 212 -50 394 243 46 17 chr3 52023311 52023484 -166013674 + (TG)n Simple_repeat Simple_repeat 1 178 0 341 250 136 30 chr3 52024560 52024692 -166012466 + L2 LINE L2 3126 3271 -1 247 296 20 10 chr3 52024700 52024798 -166012360 - MIR SINE MIR -2 260 162 652 219 19 26 chr3 52025166 52025321 -166011837 - MIR SINE MIR -84 178 25 268 176 162 27 chr3 52026622 52026696 -166010462 + MIR SINE MIR 109 192 -70 1488 138 181 0 chr3 52028459 52028713 -166008445 - AluSg SINE Alu 0 300 1 834 127 0 22 chr3 52028929 52029063 -166008095 + AluSx SINE Alu 29 159 -153 2063 129 0 0 chr3 52029315 52029624 -166007534 + AluSx SINE Alu 1 309 -3 180 243 0 0 chr3 52029662 52029699 -166007459 - L3b LINE CR1 -6 1577 1541 277 273 98 21 chr3 52029714 52029857 -166007301 + MIR SINE MIR 41 194 -68 274 231 0 0 chr3 52030757 52030809 -166006349 - MER5A DNA MER1_type -137 52 1 814 285 138 6 chr3 52030833 52031166 -166005992 + MLT1J LTR MaLR 99 475 -36 612 258 31 52 chr3 52031785 52032072 -166005086 - HAL1 LINE L1 -1 2506 2226 2670 184 67 36 chr3 52032118 52032699 -166004459 - MLT1E2 LTR MaLR -1 625 27 235 288 63 18 chr3 52032730 52032841 -166004317 - HAL1 LINE L1 -397 2110 1995 316 237 51 34 chr3 52033156 52033274 -166003884 + L1ME LINE L1 5680 5799 -363 669 172 108 108 chr3 52033294 52033361 -166003797 - MER3 DNA MER1_type 0 209 143 2015 105 0 51 chr3 52033361 52033675 -166003483 + AluSq SINE Alu 1 298 -15 1708 158 30 10 chr3 52033685 52033983 -166003175 + AluJb SINE Alu 1 304 -8 669 172 108 108 chr3 52033983 52034108 -166003050 - MER3 DNA MER1_type -74 135 6 1409 163 41 8 chr3 52034112 52034357 -166002801 + MSTD LTR MaLR 144 396 0 185 339 55 28 chr3 52034425 52034534 -166002624 - MIR SINE MIR -4 258 147 317 97 132 0 chr3 52034754 52034814 -166002344 - MLT1E3 LTR MaLR 0 624 438 366 147 40 0 chr3 52034814 52034889 -166002269 + L1M LINE L1 5260 5337 -843 617 88 0 0 chr3 52034994 52035074 -166002084 - AluS SINE Alu -233 80 1 1575 187 18 0 chr3 52035223 52035530 -166001628 - AluSx SINE Alu 0 312 1 275 231 154 15 chr3 52035627 52035757 -166001401 - HAL1b LINE L1 -504 844 697 371 301 18 18 chr3 52035767 52035933 -166001225 - HAL1b LINE L1 -701 647 482 254 179 134 0 chr3 52036020 52036087 -166001071 - HAL1b LINE L1 -992 356 281 379 203 80 80 chr3 52036372 52036510 -166000648 + MIR SINE MIR 125 262 0 248 398 58 0 chr3 52036510 52036613 -166000545 - L2 LINE L2 -48 3224 3116 1575 196 97 32 chr3 52036614 52037008 -166000150 - LTR48B LTR ERV1 0 644 173 1917 96 79 11 chr3 52037008 52037288 -165999870 + AluSx SINE Alu 6 304 -8 1575 196 97 32 chr3 52037288 52037474 -165999684 - LTR48B LTR ERV1 -471 173 1 194 302 105 0 chr3 52037919 52038005 -165999153 - MIR3 SINE MIR 0 208 114 1251 174 5 0 chr3 52038707 52038920 -165998238 - AluJb SINE Alu -98 214 1 986 171 23 0 chr3 52038932 52039108 -165998050 - AluJo SINE Alu -20 292 113 1604 6 0 0 chr3 52039648 52039828 -165997330 - AluYa5 SINE Alu -8 303 124 2670 144 38 33 chr3 52040700 52040869 -165996289 - L1MB4 LINE L1 -3 6177 6010 1832 157 14 0 chr3 52040869 52041162 -165995996 + AluJb SINE Alu 1 297 -15 2670 144 38 33 chr3 52041162 52041514 -165995644 - L1MB4 LINE L1 -170 6010 5653 792 154 8 0 chr3 52041523 52041646 -165995512 - FLAM_C SINE Alu -18 125 2 2382 123 37 0 chr3 52041646 52042021 -165995137 - L1MB4 LINE L1 -505 5675 5287 5059 173 81 19 chr3 52042030 52043211 -165993947 + L1MD2 LINE L1 4852 6126 -233 2013 120 0 20 chr3 52043211 52043512 -165993646 - AluSx SINE Alu -17 295 1 5059 173 81 19 chr3 52043512 52043760 -165993398 + L1MD2 LINE L1 6126 6357 -2 289 300 93 40 chr3 52044142 52044292 -165992866 + L2 LINE L2 297 454 -2860 2245 96 0 0 chr3 52044639 52044919 -165992239 + AluSx SINE Alu 1 280 -32 296 24 0 24 chr3 52044919 52044961 -165992197 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 351 274 119 24 chr3 52045072 52045240 -165991918 - L1ME4a LINE L1 -3 6118 5935 226 310 50 0 chr3 52045251 52045351 -165991807 - L1ME4a LINE L1 -226 5895 5791 272 264 120 32 chr3 52045857 52046033 -165991125 - MIR SINE MIR -74 188 2 216 280 0 0 chr3 52046326 52046376 -165990782 + GA-rich Low_complexity Low_complexity 2 51 0 2425 77 13 0 chr3 52046578 52046878 -165990280 - AluSx SINE Alu -8 304 1 2083 170 68 118 chr3 52046888 52047111 -165990047 - L1MC2 LINE L1 -1 6343 6110 1911 173 0 0 chr3 52047111 52047395 -165989763 - AluJo SINE Alu -28 284 1 2083 170 68 118 chr3 52047395 52047846 -165989312 - L1MC2 LINE L1 -234 6110 5703 6012 103 230 91 chr3 52047848 52049337 -165987821 - pTR5 LTR ERV1 0 2438 743 5782 201 39 43 chr3 52049337 52049708 -165987450 - L1MC2 LINE L1 -640 5704 5333 2415 102 0 0 chr3 52049708 52050012 -165987146 - AluSq SINE Alu -9 304 1 5782 201 39 43 chr3 52050012 52050147 -165987011 - L1MC2 LINE L1 -1011 5333 5199 2311 105 20 0 chr3 52050147 52050453 -165986705 - AluSx SINE Alu 0 312 1 5782 201 39 43 chr3 52050453 52050880 -165986278 - L1MC2 LINE L1 -1145 5199 4772 2327 90 3 13 chr3 52050880 52051179 -165985979 - AluSq SINE Alu -17 296 1 5782 201 39 43 chr3 52051179 52052224 -165984934 - L1MC2 LINE L1 -1572 4772 3728 536 118 0 0 chr3 52052241 52052326 -165984832 - AluJ/FRAM SINE Alu -8 304 220 363 264 68 17 chr3 52052327 52052463 -165984695 + LTR26 LTR ERV1 459 690 -1 229 262 0 16 chr3 52052477 52052538 -165984620 + CT-rich Low_complexity Low_complexity 2 61 0 270 229 121 0 chr3 52053239 52053279 -165983879 + MER5B DNA MER1_type 7 41 -137 1487 76 0 11 chr3 52053279 52053464 -165983694 + AluSp SINE Alu 120 302 -11 270 229 121 0 chr3 52053464 52053506 -165983652 + MER5B DNA MER1_type 41 99 -79 386 229 59 17 chr3 52053656 52053774 -165983384 - MIR SINE MIR -56 206 84 245 258 0 30 chr3 52054411 52054477 -165982681 - Charlie8 DNA MER1_type -2221 196 133 3412 114 20 30 chr3 52054480 52055062 -165982096 + MER4B LTR ERV1 1 733 -46 2262 123 0 3 chr3 52055062 52055364 -165981794 + AluSx SINE Alu 1 301 -11 3412 114 20 30 chr3 52055364 52055411 -165981747 + MER4B LTR ERV1 733 779 0 227 184 66 79 chr3 52055434 52055510 -165981648 - Charlie8 DNA MER1_type -2304 113 39 2341 170 0 0 chr3 52055513 52055912 -165981246 + MER57A LTR ERV1 1 399 -4 865 219 12 6 chr3 52055912 52056081 -165981077 - AluJb SINE Alu -21 291 122 2322 194 83 12 chr3 52056105 52056599 -165980559 - MER77 LTR ERV1 -69 536 8 480 287 30 12 chr3 52056688 52056855 -165980303 + MER5B DNA MER1_type 9 178 0 1078 273 105 8 chr3 52057251 52057621 -165979537 - L2 LINE L2 0 3313 2908 228 356 0 0 chr3 52057731 52057804 -165979354 + MER5B DNA MER1_type 1 73 -105 780 129 0 0 chr3 52057917 52058057 -165979101 + L1ME1 LINE L1 5313 5452 -710 26 0 0 0 chr3 52058057 52058083 -165979075 + AT_rich Low_complexity Low_complexity 1 26 0 573 158 0 0 chr3 52058083 52058184 -165978974 - AluSg/x SINE Alu 0 309 209 313 95 0 0 chr3 52058184 52058226 -165978932 - AluSc SINE Alu -44 255 214 * 341 87 0 0 chr3 52058224 52058270 -165978888 - AluSg/x SINE Alu -39 261 216 1989 126 0 0 chr3 52058270 52058533 -165978625 - AluSx SINE Alu -49 263 1 2081 123 3 3 chr3 52058533 52058858 -165978300 - AluSq SINE Alu 0 325 1 3243 199 22 17 chr3 52058858 52059541 -165977617 + L1ME1 LINE L1 5436 6125 -41 1630 194 48 3 chr3 52059541 52059830 -165977328 - AluJb SINE Alu -10 302 1 3243 199 22 17 chr3 52059830 52059868 -165977290 + L1ME1 LINE L1 6125 6161 -5 880 260 18 9 chr3 52059877 52060104 -165977054 + L1ME3 LINE L1 5934 6162 0 398 323 31 8 chr3 52060108 52060235 -165976923 - MER5B DNA MER1_type -48 130 1 252 0 0 0 chr3 52060771 52060799 -165976359 + (TG)n Simple_repeat Simple_repeat 2 29 0 242 230 54 27 chr3 52060811 52060885 -165976273 + L1M4 LINE L1 2958 3033 -3113 380 278 30 101 chr3 52060885 52061083 -165976075 - L1MDa LINE L1 -3179 3361 3178 394 132 53 13 chr3 52061962 52062038 -165975120 + AluJ/FRAM SINE Alu 217 295 -7 2322 118 0 0 chr3 52062995 52063301 -165973857 - AluSg SINE Alu -4 306 1 641 246 91 10 chr3 52063374 52063696 -165973462 - L1MDa LINE L1 -4119 2421 2111 346 312 13 16 chr3 52063945 52064104 -165973054 - L1MDa LINE L1 -5909 621 22 315 318 40 7 chr3 52064536 52064687 -165972471 - MIR3 SINE MIR -19 189 34 1115 259 67 61 chr3 52064709 52065203 -165971955 + L2 LINE L2 2817 3313 0 344 305 47 47 chr3 52065298 52065534 -165971624 - MLT1H LTR MaLR -195 354 119 331 302 39 44 chr3 52067011 52067193 -165969965 - L3 LINE CR1 -46 1531 1351 2282 110 0 0 chr3 52067861 52068162 -165968996 + AluSx SINE Alu 1 301 -11 275 279 74 0 chr3 52069128 52069250 -165967908 - MIR SINE MIR -55 207 77 1939 71 0 17 chr3 52069570 52069810 -165967348 + AluSq SINE Alu 1 236 -77 402 284 57 14 chr3 52070314 52070455 -165966703 + MIR3 SINE MIR 54 200 -8 640 301 61 0 chr3 52070971 52071200 -165965958 + MIR SINE MIR 20 262 0 1213 209 28 4 chr3 52073138 52073392 -165963766 + MIR SINE MIR 3 262 0 336 255 228 15 chr3 52073575 52073775 -165963383 + MIR SINE MIR 20 262 0 2712 52 0 0 chr3 52073796 52074105 -165963053 - AluY SINE Alu -2 309 1 356 287 169 7 chr3 52074617 52074753 -165962405 - MIR SINE MIR -73 189 32 212 258 90 0 chr3 52074762 52074851 -165962307 - L3 LINE CR1 -111 1466 1370 629 80 0 60 chr3 52074852 52074952 -165962206 + AluJb SINE Alu 30 123 -189 310 318 45 0 chr3 52074952 52075040 -165962118 + L1MC4 LINE L1 6610 6701 -1341 972 183 0 0 chr3 52075040 52075240 -165961918 + AluJb SINE Alu 130 329 0 1064 292 189 2 chr3 52076135 52076611 -165960547 - MLT1K LTR MaLR -22 566 2 2248 115 3 0 chr3 52076874 52077169 -165959989 - AluSx SINE Alu -16 296 1 556 259 253 3 chr3 52077890 52078179 -165958979 + L2 LINE L2 2933 3293 -20 248 340 49 1 chr3 52079381 52079512 -165957646 - MIR SINE MIR -44 164 68 10742 53 6 0 chr3 52079538 52081710 -165955448 + L1PA6 LINE L1 3976 6154 0 388 303 30 0 chr3 52081942 52082074 -165955084 + MIR3 SINE MIR 41 176 -32 275 278 144 0 chr3 52082111 52082201 -165954957 + MIR SINE MIR 44 146 -62 332 244 22 0 chr3 52083153 52083243 -165953915 - MLT1J LTR MaLR -144 367 276 264 292 0 0 chr3 52083658 52083723 -165953435 + L2 LINE L2 3247 3311 -2 193 342 13 0 chr3 52085790 52085869 -165951289 - MIR3 SINE MIR -46 162 83 184 309 160 21 chr3 52085877 52085971 -165951187 - MIR SINE MIR -86 122 16 464 244 0 0 chr3 52087060 52087150 -165950008 - MER5A DNA MER1_type -83 106 17 308 262 12 0 chr3 52087204 52087288 -165949870 - MIR3 SINE MIR -38 170 86 293 256 12 12 chr3 52088809 52088895 -165948263 - LTR67 LTR ERVL 0 557 472 510 213 167 20 chr3 52089451 52089601 -165947557 - MLT1H1 LTR MaLR -5 550 379 309 246 14 0 chr3 52089679 52089748 -165947410 - MER96 DNA MER1_type? 0 175 106 228 292 37 71 chr3 52090237 52090559 -165946599 - L1MEc LINE L1 -6013 383 73 363 273 88 73 chr3 52090575 52090835 -165946323 - L1M4c LINE L1 -3899 2485 2222 401 138 0 0 chr3 52140837 52140895 -165896263 - AluS SINE Alu -252 59 2 5487 216 40 39 chr3 52140896 52141323 -165895835 - L1M4 LINE L1 -944 5202 4777 2301 90 3 13 chr3 52141323 52141622 -165895536 - AluSq SINE Alu -17 296 1 5487 216 40 39 chr3 52141622 52142667 -165894491 - L1M4 LINE L1 -1369 4777 3728 540 129 0 0 chr3 52142684 52142769 -165894389 - AluJ/FRAM SINE Alu -8 304 220 368 264 68 17 chr3 52142770 52142906 -165894252 + LTR26 LTR ERV1 459 690 -1 229 262 0 16 chr3 52142920 52142981 -165894177 + CT-rich Low_complexity Low_complexity 2 61 0 181 200 25 0 chr3 52143682 52143722 -165893436 + MER5B DNA MER1_type 7 47 -131 1435 87 0 11 chr3 52143722 52143907 -165893251 + AluSp SINE Alu 120 302 -11 355 229 59 17 chr3 52144099 52144217 -165892941 - MIR SINE MIR -56 206 84 241 258 0 30 chr3 52144854 52144920 -165892238 - Charlie8 DNA MER1_type -2210 207 144 3576 116 21 30 chr3 52144923 52145505 -165891653 + MER4B LTR ERV1 1 733 -46 2233 123 0 3 chr3 52145505 52145807 -165891351 + AluSx SINE Alu 1 301 -11 3576 116 21 30 chr3 52145807 52145854 -165891304 + MER4B LTR ERV1 733 779 0 246 184 66 79 chr3 52145877 52145953 -165891205 - Charlie8 DNA MER1_type -2304 113 39 2476 170 0 0 chr3 52145956 52146355 -165890803 + MER57A LTR ERV1 1 399 -4 858 219 12 6 chr3 52146355 52146524 -165890634 - AluJb SINE Alu -21 291 122 2251 198 83 12 chr3 52146548 52147042 -165890116 - MER77 LTR ERV1 -69 536 8 515 287 30 12 chr3 52147131 52147298 -165889860 + MER5B DNA MER1_type 9 178 0 1154 273 105 8 chr3 52147694 52148064 -165889094 - L2 LINE L2 0 3313 2908 243 356 0 0 chr3 52148174 52148247 -165888911 + MER5B DNA MER1_type 1 73 -105 784 129 0 0 chr3 52148360 52148500 -165888658 + L1ME1 LINE L1 5313 5452 -712 26 0 0 0 chr3 52148500 52148526 -165888632 + AT_rich Low_complexity Low_complexity 1 26 0 609 158 0 0 chr3 52148526 52148627 -165888531 - AluSg/x SINE Alu 0 312 212 306 95 0 0 chr3 52148627 52148669 -165888489 - AluSc SINE Alu -44 255 214 * 333 87 0 0 chr3 52148667 52148713 -165888445 - AluSg/x SINE Alu -39 263 218 1952 129 0 0 chr3 52148713 52148976 -165888182 - AluSx SINE Alu -49 263 1 2063 124 3 3 chr3 52148976 52149301 -165887857 - AluSq SINE Alu 0 325 1 3200 191 25 18 chr3 52149301 52149983 -165887175 + L1ME1 LINE L1 5436 6125 -41 1678 186 48 3 chr3 52149983 52150273 -165886885 - AluJb SINE Alu -9 303 1 3200 191 25 18 chr3 52150273 52150311 -165886847 + L1ME1 LINE L1 6125 6161 -5 856 260 18 9 chr3 52150320 52150547 -165886611 + L1ME3 LINE L1 5934 6162 0 419 323 31 8 chr3 52150551 52150678 -165886480 - MER5B DNA MER1_type -48 130 1 306 0 0 0 chr3 52151214 52151248 -165885910 + (TG)n Simple_repeat Simple_repeat 2 35 0 239 230 54 27 chr3 52151260 52151334 -165885824 + L1M4 LINE L1 2958 3033 -3113 * 344 297 21 77 chr3 52151318 52151589 -165885569 - L1MDa LINE L1 -3163 3377 3125 1432 177 92 15 chr3 52151589 52151860 -165885298 - AluJo SINE Alu -20 292 1 344 297 21 77 chr3 52151860 52151915 -165885243 - L1MDa LINE L1 -3415 3125 3069 413 132 53 13 chr3 52152645 52152721 -165884437 + AluJ/FRAM SINE Alu 217 295 -17 2318 118 0 0 chr3 52153678 52153984 -165883174 - AluSg SINE Alu -4 306 1 632 246 91 10 chr3 52154057 52154379 -165882779 - L1MDa LINE L1 -4119 2421 2111 334 306 10 15 chr3 52154655 52154787 -165882371 - L1MDa LINE L1 -5937 593 22 345 318 40 7 chr3 52155219 52155370 -165881788 - MIR3 SINE MIR -19 189 34 1230 255 67 61 chr3 52155392 52155886 -165881272 + L2 LINE L2 2817 3313 0 288 305 47 47 chr3 52155981 52156217 -165880941 - MLT1H LTR MaLR -195 354 119 372 286 83 46 chr3 52157659 52157876 -165879282 - L3 LINE CR1 -2 1575 1351 2267 110 0 0 chr3 52158543 52158844 -165878314 + AluSx SINE Alu 1 301 -11 294 279 74 0 chr3 52159810 52159932 -165877226 - MIR SINE MIR -55 207 77 1926 71 0 17 chr3 52160252 52160492 -165876666 + AluSq SINE Alu 1 236 -77 437 284 57 14 chr3 52160996 52161137 -165876021 + MIR3 SINE MIR 54 200 -8 693 293 65 4 chr3 52161653 52161882 -165875276 + MIR SINE MIR 20 262 0 1277 199 29 4 chr3 52163820 52164066 -165873092 + MIR SINE MIR 3 254 -8 364 266 146 43 chr3 52164251 52164457 -165872701 + MIR SINE MIR 11 262 0 2701 52 0 0 chr3 52164478 52164787 -165872371 - AluY SINE Alu -2 309 1 386 277 177 7 chr3 52165303 52165444 -165871714 - MIR SINE MIR -77 185 21 227 258 90 0 chr3 52165444 52165533 -165871625 - L3 LINE CR1 -111 1466 1370 670 80 0 60 chr3 52165534 52165634 -165871524 + AluJb SINE Alu 30 123 -189 393 188 0 0 chr3 52165637 52165722 -165871436 + (TA)n Simple_repeat Simple_repeat 2 86 0 961 183 0 0 chr3 52165722 52165926 -165871232 + AluJb SINE Alu 130 333 0 984 290 189 2 chr3 52166821 52167297 -165869861 - MLT1K LTR MaLR -22 566 2 2219 109 0 0 chr3 52167560 52167844 -165869314 - AluSx SINE Alu -16 296 13 625 266 253 3 chr3 52168576 52168865 -165868293 + L2 LINE L2 2933 3293 -20 264 340 49 1 chr3 52170067 52170198 -165866960 - MIR SINE MIR -44 164 68 11289 53 6 0 chr3 52170224 52172396 -165864762 + L1PA6 LINE L1 3976 6154 0 414 303 30 0 chr3 52172628 52172760 -165864398 + MIR3 SINE MIR 41 176 -32 298 282 149 0 chr3 52172797 52172903 -165864255 + MIR SINE MIR 44 164 -62 313 244 22 0 chr3 52173839 52173929 -165863229 - MLT1J LTR MaLR -144 367 276 323 291 151 70 chr3 52173993 52174409 -165862749 + L2 LINE L2 2821 3270 -2 190 282 42 14 chr3 52176484 52176555 -165860603 - MIR SINE MIR -108 154 82 * 226 312 156 18 chr3 52176548 52176657 -165860501 - MIR SINE MIR -69 139 16 191 242 99 55 chr3 52177245 52177336 -165859822 + MIR3 SINE MIR 92 186 -22 490 244 0 0 chr3 52177746 52177836 -165859322 - MER5A DNA MER1_type -83 106 17 325 262 12 0 chr3 52177890 52177974 -165859184 - MIR3 SINE MIR -38 170 86 285 256 12 12 chr3 52179495 52179581 -165857577 - LTR67 LTR ERVL 0 557 472 492 213 167 20 chr3 52180137 52180287 -165856871 - MLT1H1 LTR MaLR -5 550 379 295 246 14 0 chr3 52180365 52180434 -165856724 - MER96 DNA MER1_type? 0 175 106 484 292 37 71 chr3 52180923 52181245 -165855913 - L1MEc LINE L1 -6013 383 73 495 279 149 46 chr3 52181261 52181700 -165855458 - L1MEc LINE L1 -3899 2232 1805 395 283 62 47 chr3 52181786 52181884 -165855274 - L1MEc LINE L1 -4480 1649 1554 2273 111 0 0 chr3 52181884 52182221 -165854937 - AluSx SINE Alu 0 337 1 395 283 62 47 chr3 52182221 52182479 -165854679 - L1MEc LINE L1 -4575 1554 1272 281 192 77 13 chr3 52182474 52182552 -165854606 - L1MC4 LINE L1 -1346 6696 6614 * 306 274 22 111 chr3 52182553 52182688 -165854470 + L1MC4 LINE L1 6605 6727 -1315 282 255 149 32 chr3 52182743 52182931 -165854227 - L1MEc LINE L1 -4950 1169 960 2193 111 10 10 chr3 52182969 52183276 -165853882 + AluSq SINE Alu 1 307 -6 506 339 48 44 chr3 52183398 52183625 -165853533 - L1MEc LINE L1 -5362 757 530 1360 119 0 0 chr3 52183762 52183939 -165853219 - AluJb SINE Alu -15 297 121 463 312 77 25 chr3 52183957 52184358 -165852800 - L1MC4 LINE L1 -2130 5678 5257 425 315 56 25 chr3 52184900 52185097 -165852061 - L2 LINE L2 -756 2558 2356 441 269 173 19 chr3 52185322 52185530 -165851628 - L1MD3 LINE L1 -2030 5965 5726 301 246 26 26 chr3 52185548 52185662 -165851496 - L1MD3 LINE L1 -2162 3984 3871 1207 229 88 0 chr3 52185769 52186074 -165851084 + MLT1E1 LTR MaLR 1 332 -322 4347 78 0 14 chr3 52186089 52186214 -165850944 - MER41A LTR ERV1 0 554 429 2511 68 3 3 chr3 52186214 52186524 -165850634 + AluY SINE Alu 1 310 -1 4347 78 0 14 chr3 52186524 52186960 -165850198 - MER41A LTR ERV1 -125 429 1 3979 56 29 2 chr3 52186961 52187478 -165849680 - MER41A-int LTR ERV1 -2 5944 5414 * 9157 129 51 35 chr3 52187471 52189874 -165847284 - MER41A-int LTR ERV1 -870 4921 2565 396 0 0 0 chr3 52189884 52189928 -165847230 + (GA)n Simple_repeat Simple_repeat 2 45 0 3955 125 31 39 chr3 52189929 52190633 -165846525 - MER41A-int LTR ERV1 -5337 609 1 4257 89 5 2 chr3 52190719 52191271 -165845887 - MER41A LTR ERV1 0 554 1 972 235 43 21 chr3 52191406 52191687 -165845471 + MLT1E1 LTR MaLR 323 609 -15 4381 160 49 11 chr3 52191689 52191864 -165845294 - L1MB4 LINE L1 -33 6147 5980 2182 132 7 0 chr3 52191864 52192167 -165844991 - AluSq SINE Alu -8 305 1 4381 160 49 11 chr3 52192167 52192846 -165844312 - L1MB4 LINE L1 -200 5980 5260 301 97 132 0 chr3 52192846 52192906 -165844252 + MLT1E3 LTR MaLR 438 624 0 181 339 55 28 chr3 52193126 52193235 -165843923 + MIR SINE MIR 147 258 -4 1324 163 41 8 chr3 52193303 52193548 -165843610 - MSTD LTR MaLR 0 396 144 624 172 108 108 chr3 52193552 52193677 -165843481 + MER3 DNA MER1_type 6 130 -79 1852 158 30 10 chr3 52193677 52193975 -165843183 - AluJb SINE Alu -8 304 1 2165 104 0 54 chr3 52193985 52194301 -165842857 - AluSq SINE Alu -14 299 1 624 172 108 108 chr3 52194301 52194368 -165842790 + MER3 DNA MER1_type 138 209 0 288 314 17 0 chr3 52194388 52194506 -165842652 - L1ME LINE L1 -363 5799 5680 357 294 59 25 chr3 52194813 52194932 -165842226 + HAL1 LINE L1 1988 2110 -397 2495 188 67 36 chr3 52194963 52195544 -165841614 + MLT1E2 LTR MaLR 27 625 -1 566 293 14 35 chr3 52195590 52195877 -165841281 + HAL1 LINE L1 2226 2506 -1 742 285 138 6 chr3 52196496 52196829 -165840329 - MLT1J LTR MaLR -36 475 99 279 231 0 0 chr3 52196853 52196905 -165840253 + MER5A DNA MER1_type 1 52 -137 283 301 91 14 chr3 52197805 52197948 -165839210 - MIR SINE MIR -68 194 41 189 313 0 0 chr3 52197952 52198000 -165839158 + L3b LINE CR1 1530 1577 -6 2118 129 0 0 chr3 52198038 52198347 -165838811 - AluSx SINE Alu -3 309 1 862 138 0 22 chr3 52198599 52198737 -165838421 - AluSx SINE Alu -153 159 25 1521 142 181 0 chr3 52198949 52199203 -165837955 + AluSg SINE Alu 1 300 0 248 184 148 25 chr3 52200966 52201047 -165836111 - MIR SINE MIR -63 145 101 645 236 18 24 chr3 52202337 52202502 -165834656 + MIR SINE MIR 21 184 -78 265 306 20 10 chr3 52202864 52202962 -165834196 + MIR SINE MIR 162 260 -2 352 277 143 0 chr3 52202970 52203089 -165834069 - L2 LINE L2 -1 3271 3136 211 345 69 26 chr3 52203120 52203236 -165833922 - L2 LINE L2 -3 3269 3149 394 243 46 17 chr3 52204178 52204351 -165832807 + (CA)n Simple_repeat Simple_repeat 1 178 0 266 319 86 22 chr3 52204802 52205001 -165832157 - MIR SINE MIR -50 212 6 255 373 27 0 chr3 52205083 52205193 -165831965 + MIR SINE MIR 92 204 -58 235 200 0 0 chr3 52206487 52206532 -165830626 + (CTCCG)n Simple_repeat Simple_repeat 2 46 0 186 43 0 0 chr3 52206542 52206565 -165830593 + (TCC)n Simple_repeat Simple_repeat 1 23 0 224 284 167 0 chr3 52207251 52207353 -165829805 + MIR SINE MIR 35 153 -55 369 198 0 0 chr3 52208834 52208950 -165828208 + (CA)n Simple_repeat Simple_repeat 1 116 0 599 182 0 11 chr3 52208965 52209146 -165828012 + (CA)n Simple_repeat Simple_repeat 2 180 0 447 196 0 0 chr3 52209161 52209304 -165827854 + (CA)n Simple_repeat Simple_repeat 2 144 0 39 22 0 0 chr3 52210003 52210049 -165827109 + AT_rich Low_complexity Low_complexity 1 46 0 1019 291 220 55 chr3 52212477 52214238 -165822920 - L2 LINE L2 -549 2765 714 2023 264 109 12 chr3 52214255 52215356 -165821802 - L2 LINE L2 -4 3309 2093 194 289 36 36 chr3 52215900 52215983 -165821175 + MIR3 SINE MIR 92 174 -34 211 162 0 88 chr3 52218586 52218654 -165818504 + CT-rich Low_complexity Low_complexity 4 65 0 247 278 270 22 chr3 52219027 52219383 -165817775 + L2 LINE L2 2090 2533 -781 466 305 114 0 chr3 52219387 52219554 -165817604 + MER5A DNA MER1_type 4 189 0 246 217 33 0 chr3 52219949 52220009 -165817149 + L2 LINE L2 3171 3232 -40 387 330 98 14 chr3 52221635 52221850 -165815308 - MIR SINE MIR -14 248 16 203 381 45 13 chr3 52221904 52222059 -165815099 + L2 LINE L2 2905 3064 -208 272 161 25 99 chr3 52222104 52222185 -165814973 + MIR3 SINE MIR 107 167 -41 678 211 0 0 chr3 52224264 52224387 -165812771 - FLAM_A SINE Alu -8 125 3 292 302 60 43 chr3 52224476 52224592 -165812566 + MIR3 SINE MIR 69 186 -22 205 86 0 29 chr3 52224952 52224987 -165812171 + (CACCC)n Simple_repeat Simple_repeat 1 34 0 261 0 0 0 chr3 52224992 52225021 -165812137 + (CA)n Simple_repeat Simple_repeat 2 30 0 2158 74 0 61 chr3 52225268 52225579 -165811579 - AluSq SINE Alu -21 292 1 271 306 32 32 chr3 52225777 52225901 -165811257 - MIR SINE MIR -131 131 8 999 246 112 49 chr3 52226109 52226604 -165810554 - L2 LINE L2 -46 3267 2745 1970 163 0 0 chr3 52226606 52226913 -165810245 - AluJo SINE Alu -5 307 1 423 184 7 105 chr3 52226919 52227071 -165810087 - L1MC5 LINE L1 -32 7929 7793 217 164 55 0 chr3 52227085 52227140 -165810018 - L2 LINE L2 -814 2500 2443 258 200 40 0 chr3 52227183 52227258 -165809900 - MIR SINE MIR -66 196 119 1141 237 3 33 chr3 52227300 52227665 -165809493 - L1ME1 LINE L1 -5 6161 5817 1542 103 5 14 chr3 52227716 52227929 -165809229 + AluSx SINE Alu 1 211 -101 537 288 87 18 chr3 52227942 52228171 -165808987 + LTR67 LTR ERVL 5 249 -308 264 335 57 6 chr3 52228435 52228593 -165808565 + ERVL LTR ERVL 1106 1271 -4383 506 302 24 28 chr3 52228755 52228967 -165808191 + ERVL LTR ERVL 1496 1706 -4058 487 310 26 0 chr3 52228958 52229113 -165808045 + ERVL LTR ERVL 4401 4559 -1205 * 561 295 51 41 chr3 52229115 52229430 -165807728 + HAL1 LINE L1 3 320 -2187 548 245 207 8 chr3 52229533 52229770 -165807388 + HAL1 LINE L1 530 813 -1694 2490 88 51 20 chr3 52229774 52230127 -165807031 + THE1B LTR MaLR 1 364 0 3084 190 42 68 chr3 52230153 52231260 -165805898 + L1MD2 LINE L1 3 1138 -5268 276 30 0 0 chr3 52231260 52231293 -165805865 + (TG)n Simple_repeat Simple_repeat 2 34 0 3084 190 42 68 chr3 52231293 52231681 -165805477 + L1MD2 LINE L1 1138 1685 -4721 1636 136 4 51 chr3 52231681 52231954 -165805204 + AluSx SINE Alu 38 297 -15 3084 190 42 68 chr3 52231954 52232061 -165805097 + L1MD2 LINE L1 1685 1793 -4613 2410 232 63 8 chr3 52232061 52232810 -165804348 + L1MD2 LINE L1 4497 5286 -1120 437 222 87 8 chr3 52232790 52232819 -165804339 + L1MB3 LINE L1 4665 4690 -1456 * 1948 154 6 25 chr3 52232819 52233144 -165804014 + 7SLRNA srpRNA srpRNA 1 319 -1 437 222 87 8 chr3 52233144 52233240 -165803918 + L1MB3 LINE L1 4690 4800 -1346 671 143 8 0 chr3 52233241 52233360 -165803798 + MLT2B2 LTR ERVL 2 121 -394 3848 135 44 13 chr3 52233360 52233440 -165803718 + L1MB3 LINE L1 5528 5604 -579 2310 86 7 0 chr3 52233440 52233741 -165803417 + AluY SINE Alu 1 303 -8 3848 135 44 13 chr3 52233741 52234295 -165802863 + L1MB3 LINE L1 5604 6182 -1 3921 200 45 23 chr3 52234370 52235470 -165801688 + L1MD2 LINE L1 5272 6422 -197 414 57 0 0 chr3 52235470 52235523 -165801635 + (CA)n Simple_repeat Simple_repeat 2 54 0 3921 200 45 23 chr3 52235523 52235617 -165801541 + L1MD2 LINE L1 6422 6512 -107 671 161 69 73 chr3 52235617 52235835 -165801323 + MLT1A1 LTR MaLR 1 279 -117 5061 158 48 50 chr3 52235835 52236933 -165800225 - MLT1A1-int LTR MaLR -639 1096 1 1655 156 30 111 chr3 52236933 52237330 -165799828 - MLT1A1 LTR MaLR 0 365 1 3084 171 12 16 chr3 52237405 52237919 -165799239 - MLT2B2 LTR ERVL -3 512 1 650 301 91 35 chr3 52238261 52238390 -165798768 + LTR67 LTR ERVL 9 129 -428 2659 142 86 11 chr3 52238390 52238842 -165798316 + MER66B LTR ERV1 1 486 0 650 301 91 35 chr3 52238842 52239140 -165798018 + LTR67 LTR ERVL 129 460 -97 180 338 14 28 chr3 52239200 52239271 -165797887 - L2 LINE L2 -25 3288 3219 * 335 257 201 14 chr3 52239258 52239402 -165797756 + MIR SINE MIR 17 187 -75 2002 125 3 30 chr3 52239805 52240110 -165797048 - AluSx SINE Alu -14 298 2 586 277 93 48 chr3 52240111 52240487 -165796671 + MLT1I LTR MaLR 17 409 0 201 332 39 82 chr3 52241230 52241438 -165795720 + L2 LINE L2 3024 3222 -50 310 271 38 15 chr3 52244745 52244878 -165792280 + G-rich Low_complexity Low_complexity 5 140 0 270 331 175 13 chr3 52246597 52246751 -165790407 + MIR SINE MIR 28 206 -56 838 294 10 0 chr3 52247306 52247500 -165789658 - MER91A DNA MER1_type 0 196 1 249 290 65 9 chr3 52247875 52247982 -165789176 + MIR3 SINE MIR 87 199 -9 196 239 60 30 chr3 52248016 52248083 -165789075 + L2 LINE L2 2982 3050 -222 221 239 30 15 chr3 52249008 52249075 -165788083 - MER91A DNA MER1_type -128 68 1 210 71 0 0 chr3 52249892 52249920 -165787238 + (TCC)n Simple_repeat Simple_repeat 2 29 0 542 175 0 34 chr3 52249951 52250128 -165787030 + CT-rich Low_complexity Low_complexity 1 171 0 459 254 0 0 chr3 52251357 52251467 -165785691 + MER81 DNA DNA 5 114 0 192 238 48 0 chr3 52254136 52254199 -165782959 - MIR SINE MIR -79 129 64 27 81 0 0 chr3 52254697 52254759 -165782399 + GC_rich Low_complexity Low_complexity 1 62 0 32 0 0 0 chr3 52254821 52254853 -165782305 + GC_rich Low_complexity Low_complexity 1 32 0 185 62 0 31 chr3 52254986 52255018 -165782140 + (CCCCAG)n Simple_repeat Simple_repeat 3 33 0 382 281 79 34 chr3 52258107 52258285 -165778873 - MIR SINE MIR -72 190 5 1339 206 32 11 chr3 52258661 52258938 -165778220 - AluJo SINE Alu -18 294 12 1051 98 0 0 chr3 52259614 52259747 -165777411 - AluSq/x SINE Alu -179 133 1 1443 169 230 42 chr3 52260993 52261513 -165775645 + MLT1E3 LTR MaLR 1 624 0 315 0 0 0 chr3 52262008 52262043 -165775115 + (CA)n Simple_repeat Simple_repeat 1 35 0 2240 107 3 0 chr3 52263610 52263908 -165773250 - AluSq SINE Alu -14 299 1 191 226 177 16 chr3 52264256 52264318 -165772840 - L2 LINE L2 0 3272 3201 219 324 108 0 chr3 52264684 52264786 -165772372 - L2 LINE L2 -559 2755 2643 28 29 0 0 chr3 52264927 52264962 -165772196 + AT_rich Low_complexity Low_complexity 1 35 0 416 268 49 47 chr3 52267018 52267280 -165769878 + L1ME2 LINE L1 5678 5936 -234 2437 78 10 0 chr3 52267420 52267713 -165769445 - AluSg SINE Alu -14 296 1 242 286 135 8 chr3 52268068 52268194 -165768964 - L2 LINE L2 -41 3231 3090 256 336 88 8 chr3 52268201 52268326 -165768832 + MIR SINE MIR 58 192 -70 355 197 26 0 chr3 52269122 52269205 -165767953 + MIR3 SINE MIR 79 165 -43 393 316 108 31 chr3 52269225 52269513 -165767645 - L3 LINE CR1 -64 1513 1204 2357 56 42 3 chr3 52273388 52273673 -165763485 - AluY SINE Alu -15 296 1 195 42 0 0 chr3 52274229 52274253 -165762905 + (T)n Simple_repeat Simple_repeat 1 24 0 1818 167 0 14 chr3 52275969 52276262 -165760896 + AluJo SINE Alu 1 289 -23 974 285 174 6 chr3 52276885 52276940 -165760218 - L2 LINE L2 -91 3222 3178 2206 125 0 6 chr3 52276940 52277252 -165759906 + AluSx SINE Alu 1 310 -2 974 285 174 6 chr3 52277252 52277733 -165759425 - L2 LINE L2 -135 3178 2593 290 313 10 0 chr3 52277736 52277832 -165759326 - L2 LINE L2 -666 2648 2552 21 36 0 0 chr3 52278488 52278516 -165758642 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr3 52279926 52279950 -165757208 + AT_rich Low_complexity Low_complexity 1 24 0 2319 120 0 0 chr3 52280282 52280591 -165756567 - AluSx SINE Alu -3 309 1 309 191 132 0 chr3 52284756 52284824 -165752334 + MIR3 SINE MIR 132 208 0 25 31 0 0 chr3 52289419 52289451 -165747707 + AT_rich Low_complexity Low_complexity 1 32 0 1831 148 13 26 chr3 52290567 52290872 -165746286 + AluSx SINE Alu 1 301 -11 2499 76 0 0 chr3 52290940 52291242 -165745916 - AluSq SINE Alu -11 302 1 22 56 0 0 chr3 52291287 52291323 -165745835 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 52291390 52291411 -165745747 + AT_rich Low_complexity Low_complexity 1 21 0 1588 134 20 72 chr3 52292254 52292546 -165744612 + AluJo SINE Alu 1 277 -35 521 174 165 0 chr3 52292668 52292789 -165744369 - Charlie1 DNA MER1_type -1 2760 2620 * 872 223 30 20 chr3 52292770 52292967 -165744191 - Charlie1 DNA MER1_type -2519 242 44 21 0 0 0 chr3 52293908 52293929 -165743229 + AT_rich Low_complexity Low_complexity 1 21 0 2407 108 0 0 chr3 52293932 52294239 -165742919 + AluSx SINE Alu 1 307 -5 411 129 0 0 chr3 52295225 52295287 -165741871 + AluJ/FLAM SINE Alu 23 84 -228 386 240 40 20 chr3 52296185 52296285 -165740873 + L2 LINE L2 3156 3257 -15 297 300 48 52 chr3 52296301 52296631 -165740527 + HAL1b LINE L1 191 519 -829 228 276 135 6 chr3 52296644 52296800 -165740358 + HAL1b LINE L1 599 774 -574 345 231 150 7 chr3 52297017 52297164 -165739994 - L1MC4a LINE L1 -1785 6023 5856 1265 169 0 10 chr3 52297197 52297404 -165739754 - AluJb SINE Alu -19 293 89 2238 103 20 3 chr3 52297561 52297853 -165739305 - AluSg SINE Alu -13 297 1 33 25 0 0 chr3 52298779 52298819 -165738339 + AT_rich Low_complexity Low_complexity 1 40 0 2304 70 7 13 chr3 52299005 52299304 -165737854 + AluSp SINE Alu 1 297 -16 343 282 43 25 chr3 52299597 52299760 -165737398 + L1M4 LINE L1 4493 4658 -1488 232 259 135 42 chr3 52299822 52300015 -165737143 - L1MC4 LINE L1 -97 7945 7735 340 246 29 0 chr3 52300062 52300131 -165737027 + MER21B LTR ERV1 18 88 -775 2017 125 7 16 chr3 52300162 52300467 -165736691 - AluSx SINE Alu -10 302 1 2254 223 84 78 chr3 52300470 52301041 -165736117 + MER21B LTR ERV1 20 599 -264 1919 104 94 3 chr3 52301041 52301328 -165735830 + AluSq SINE Alu 1 313 0 2254 223 84 78 chr3 52301328 52301514 -165735644 + MER21B LTR ERV1 599 782 -81 343 278 9 27 chr3 52301582 52301694 -165735464 - L1MB5 LINE L1 -348 5826 5716 453 246 37 4 chr3 52301934 52302068 -165735090 - L1MC4 LINE L1 -668 7140 7032 277 283 133 44 chr3 52302082 52302262 -165734896 + MLT1J LTR MaLR 316 511 0 766 191 0 26 chr3 52302311 52302452 -165734706 + FAM SINE Alu 1 40 -145 859 129 0 30 chr3 52302452 52302584 -165734574 - AluJo/FLAM SINE Alu -174 128 1 21 82 0 0 chr3 52302594 52302643 -165734515 + AT_rich Low_complexity Low_complexity 1 49 0 1511 210 153 56 chr3 52303950 52304320 -165732838 + L1M4 LINE L1 2121 2454 -3692 2050 131 0 28 chr3 52304320 52304641 -165732517 + AluSx SINE Alu 1 312 0 1511 210 153 56 chr3 52304641 52304909 -165732249 + L1M4 LINE L1 2454 2821 -3325 722 221 132 9 chr3 52304921 52305261 -165731897 + L1M4 LINE L1 3026 3407 -2739 2304 95 3 7 chr3 52305276 52305580 -165731578 + AluSx SINE Alu 1 303 -9 1778 149 46 26 chr3 52305927 52306229 -165730929 - AluJo SINE Alu -4 308 1 1891 148 0 32 chr3 52306257 52306567 -165730591 - AluSx SINE Alu 0 312 13 24 0 0 0 chr3 52306660 52306684 -165730474 + AT_rich Low_complexity Low_complexity 1 24 0 613 242 83 27 chr3 52306738 52306879 -165730279 + L2 LINE L2 2715 2847 -466 1560 168 104 3 chr3 52306879 52307195 -165729963 - MER7A DNA MER2_type 0 346 1 613 242 83 27 chr3 52307195 52307344 -165729814 + L2 LINE L2 2847 3078 -235 291 114 0 0 chr3 52308357 52308401 -165728757 + (CGGGGG)n Simple_repeat Simple_repeat 4 47 0 1259 224 116 44 chr3 52309128 52309607 -165727551 - L1M4 LINE L1 -755 5391 4861 2828 0 0 0 chr3 52309607 52309902 -165727256 - AluYa5 SINE Alu -16 295 1 1259 224 116 44 chr3 52309902 52310010 -165727148 - L1M4 LINE L1 -1285 4861 4762 2514 55 0 0 chr3 52310048 52310341 -165726817 + AluY SINE Alu 1 293 -18 3621 158 34 39 chr3 52310400 52310684 -165726474 - L1MB3 LINE L1 -19 6164 5880 2422 80 0 3 chr3 52310684 52310986 -165726172 + AluSx SINE Alu 1 301 -11 3621 158 34 39 chr3 52310986 52311446 -165725712 - L1MB3 LINE L1 -303 5880 5424 1318 129 81 0 chr3 52311490 52311700 -165725458 + MER30 DNA MER1_type 4 230 0 2287 104 0 7 chr3 52311740 52312039 -165725119 - AluSg SINE Alu -13 297 1 339 321 30 8 chr3 52312477 52312611 -165724547 + MIR3 SINE MIR 67 203 -5 2211 109 30 0 chr3 52312991 52313294 -165723864 + AluSx SINE Alu 1 312 0 286 200 13 40 chr3 52313406 52313481 -165723677 - MIR SINE MIR -87 175 103 706 225 103 82 chr3 52313649 52314232 -165722926 + L1MC5 LINE L1 7102 7696 -265 22 0 0 0 chr3 52314594 52314616 -165722542 + AT_rich Low_complexity Low_complexity 1 22 0 1131 288 92 9 chr3 52315042 52315716 -165721442 + L2 LINE L2 2530 3274 -39 1121 148 151 109 chr3 52315724 52315882 -165721276 + MER2 DNA MER2_type 1 151 -194 2082 100 10 58 chr3 52315882 52316193 -165720965 - AluSx SINE Alu -16 296 1 1121 148 151 109 chr3 52316193 52316365 -165720793 + MER2 DNA MER2_type 151 345 0 2320 107 10 0 chr3 52316813 52317122 -165720036 + AluSx SINE Alu 1 312 0 227 266 74 42 chr3 52317514 52317609 -165719549 + MIR SINE MIR 52 151 -57 2168 97 17 0 chr3 52317820 52318120 -165719038 + AluSg SINE Alu 1 305 -5 180 0 0 0 chr3 52318314 52318334 -165718824 + (CCCG)n Simple_repeat Simple_repeat 4 23 0 706 27 18 2 chr3 52318714 52318935 -165718223 - AluY SINE Alu -17 294 30 419 239 201 0 chr3 52319217 52319351 -165717807 - MIR SINE MIR -88 174 14 1615 112 30 88 chr3 52319484 52319789 -165717369 - MER1B DNA MER1_type 0 339 53 2362 88 0 19 chr3 52320023 52320330 -165716828 - AluSg SINE Alu -9 301 1 254 164 110 67 chr3 52320602 52320675 -165716483 - AluJ/FLAM SINE Alu -237 65 1 2188 121 0 10 chr3 52320885 52321191 -165715967 - AluSg SINE Alu -7 303 1 2050 118 11 7 chr3 52321194 52321523 -165715635 - AluSq SINE Alu 0 330 1 2504 46 0 26 chr3 52321563 52321865 -165715293 - AluY SINE Alu -15 296 3 474 329 160 35 chr3 52322072 52322795 -165714363 - L2 LINE L2 -556 2758 1892 2100 128 13 3 chr3 52322795 52323099 -165714059 + AluSx SINE Alu 5 311 -1 474 329 160 35 chr3 52323099 52323305 -165713853 - L2 LINE L2 -1422 1892 1713 327 353 79 49 chr3 52323350 52323959 -165713199 - L2 LINE L2 -1939 1375 749 1994 112 32 7 chr3 52324155 52324460 -165712698 - AluSq SINE Alu 0 312 1 401 198 49 0 chr3 52324580 52324661 -165712497 - MLT1F LTR MaLR -457 85 1 517 279 57 63 chr3 52324720 52324758 -165712400 + L2 LINE L2 2213 2250 -1064 2080 128 0 3 chr3 52324758 52325048 -165712110 + AluSx SINE Alu 1 289 -23 517 279 57 63 chr3 52325048 52325114 -165712044 + L2 LINE L2 2250 2315 -999 2438 123 40 181 chr3 52325114 52325759 -165711399 - MLT2B3 LTR ERVL 0 554 1 517 279 57 63 chr3 52325759 52325968 -165711190 + L2 LINE L2 2315 2525 -789 21 0 0 0 chr3 52326100 52326121 -165711037 + AT_rich Low_complexity Low_complexity 1 21 0 2276 74 7 13 chr3 52326307 52326606 -165710552 + AluSp SINE Alu 1 297 -16 343 292 62 21 chr3 52326781 52327069 -165710089 + L1M4 LINE L1 4358 4665 -1481 232 259 135 42 chr3 52327124 52327317 -165709841 - L1MC4 LINE L1 -97 7945 7735 340 246 29 0 chr3 52327364 52327433 -165709725 + MER21B LTR ERV1 18 88 -775 2033 121 7 16 chr3 52327464 52327769 -165709389 - AluSx SINE Alu -10 302 1 2127 228 89 72 chr3 52327772 52328342 -165708816 + MER21B LTR ERV1 20 608 -255 1919 104 94 3 chr3 52328342 52328629 -165708529 + AluSq SINE Alu 1 313 0 2127 228 89 72 chr3 52328629 52328808 -165708350 + MER21B LTR ERV1 608 782 -81 343 278 9 27 chr3 52328876 52328988 -165708170 - L1MB5 LINE L1 -348 5826 5716 453 246 37 4 chr3 52329228 52329362 -165707796 - L1MC4 LINE L1 -668 7140 7032 288 291 142 15 chr3 52329376 52329510 -165707648 + MLT1J LTR MaLR 316 466 -45 766 191 0 26 chr3 52329601 52329742 -165707416 + FAM SINE Alu 1 40 -145 819 130 8 30 chr3 52329742 52329873 -165707285 - AluJo/FLAM SINE Alu -174 128 1 21 82 0 0 chr3 52329883 52329932 -165707226 + AT_rich Low_complexity Low_complexity 1 49 0 1583 214 156 38 chr3 52331237 52331607 -165705551 + L1M4 LINE L1 2121 2446 -3700 2000 133 0 29 chr3 52331607 52331923 -165705235 + AluSx SINE Alu 1 307 -5 1583 214 156 38 chr3 52331923 52332179 -165704979 + L1M4 LINE L1 2446 2821 -3325 722 221 132 9 chr3 52332191 52332531 -165704627 + L1M4 LINE L1 3026 3407 -2739 2185 112 3 7 chr3 52332546 52332849 -165704309 + AluSx SINE Alu 1 302 -10 1735 155 46 26 chr3 52333196 52333499 -165703659 - AluJo SINE Alu -3 309 1 1891 148 0 32 chr3 52333528 52333838 -165703320 - AluSx SINE Alu 0 312 13 21 0 0 0 chr3 52333931 52333952 -165703206 + AT_rich Low_complexity Low_complexity 1 21 0 613 243 85 28 chr3 52334006 52334145 -165703013 + L2 LINE L2 2715 2845 -468 1537 170 101 3 chr3 52334145 52334462 -165702696 - MER7A DNA MER2_type 0 346 1 613 243 85 28 chr3 52334462 52334611 -165702547 + L2 LINE L2 2845 3078 -235 291 114 0 0 chr3 52335624 52335668 -165701490 + (CGGGGG)n Simple_repeat Simple_repeat 4 47 0 1015 240 75 42 chr3 52336382 52336861 -165700297 - L1M4 LINE L1 -755 5391 4897 2408 68 3 0 chr3 52336862 52337157 -165700001 - AluSx SINE Alu -16 296 1 195 69 0 0 chr3 52337562 52337591 -165699567 + (CA)n Simple_repeat Simple_repeat 2 30 0 219 324 108 0 chr3 52337935 52338037 -165699121 - L2 LINE L2 -559 2755 2643 28 29 0 0 chr3 52338178 52338213 -165698945 + AT_rich Low_complexity Low_complexity 1 35 0 416 268 49 47 chr3 52340269 52340531 -165696627 + L1ME2 LINE L1 5678 5936 -234 2462 75 10 0 chr3 52340671 52340965 -165696193 - AluSg SINE Alu -13 297 1 242 286 135 8 chr3 52341320 52341446 -165695712 - L2 LINE L2 -41 3231 3090 256 336 88 8 chr3 52341453 52341578 -165695580 + MIR SINE MIR 58 192 -70 355 197 26 0 chr3 52342374 52342457 -165694701 + MIR3 SINE MIR 79 165 -43 404 300 114 45 chr3 52342477 52342767 -165694391 - L3 LINE CR1 -64 1513 1204 2342 60 42 3 chr3 52346642 52346927 -165690231 - AluY SINE Alu -15 296 1 23 54 0 0 chr3 52347486 52347523 -165689635 + AT_rich Low_complexity Low_complexity 1 37 0 1818 167 0 14 chr3 52349219 52349512 -165687646 + AluJo SINE Alu 1 289 -23 974 287 174 6 chr3 52350134 52350189 -165686969 - L2 LINE L2 -91 3222 3178 2183 126 0 7 chr3 52350189 52350498 -165686660 + AluSx SINE Alu 1 307 -5 974 287 174 6 chr3 52350498 52350979 -165686179 - L2 LINE L2 -135 3178 2593 290 313 10 0 chr3 52350982 52351078 -165686080 - L2 LINE L2 -666 2648 2552 21 36 0 0 chr3 52351734 52351762 -165685396 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr3 52353171 52353195 -165683963 + AT_rich Low_complexity Low_complexity 1 24 0 2321 120 0 0 chr3 52353527 52353836 -165683322 - AluSx SINE Alu -3 309 1 183 345 24 0 chr3 52355439 52355523 -165681635 - MIR3 SINE MIR -5 203 118 227 266 74 42 chr3 52355677 52355772 -165681386 + MIR SINE MIR 52 151 -57 2232 84 17 0 chr3 52355983 52356280 -165680878 + AluSg SINE Alu 1 302 -8 21 0 0 0 chr3 52356484 52356505 -165680653 + GC_rich Low_complexity Low_complexity 1 21 0 706 27 18 2 chr3 52356884 52357105 -165680053 - AluY SINE Alu -17 294 30 419 239 201 0 chr3 52357387 52357521 -165679637 - MIR SINE MIR -88 174 14 1615 112 30 88 chr3 52357654 52357959 -165679199 - MER1B DNA MER1_type 0 339 53 2030 117 3 20 chr3 52358193 52358492 -165678666 - AluSx SINE Alu -9 303 10 22 56 0 0 chr3 52358549 52358585 -165678573 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 52358652 52358673 -165678485 + AT_rich Low_complexity Low_complexity 1 21 0 1588 134 20 72 chr3 52359516 52359808 -165677350 + AluJo SINE Alu 1 277 -35 521 174 165 0 chr3 52359930 52360051 -165677107 - Charlie1 DNA MER1_type -1 2760 2620 * 872 223 30 20 chr3 52360032 52360229 -165676929 - Charlie1 DNA MER1_type -2519 242 44 21 0 0 0 chr3 52361170 52361191 -165675967 + AT_rich Low_complexity Low_complexity 1 21 0 2380 111 0 0 chr3 52361194 52361501 -165675657 + AluSx SINE Alu 1 307 -5 302 321 57 60 chr3 52362591 52362924 -165674234 + L2 LINE L2 2374 2705 -609 945 152 129 0 chr3 52363057 52363228 -165673930 - L1MB3 LINE L1 0 6183 5991 251 180 80 0 chr3 52363509 52363559 -165673599 + L2 LINE L2 3219 3272 0 730 218 50 28 chr3 52465942 52466121 -165571037 + MIR SINE MIR 12 194 -68 456 224 53 110 chr3 52466704 52466758 -165570400 - MER112 DNA MER1_type -13 247 191 2185 133 0 10 chr3 52466758 52467060 -165570098 + AluSx SINE Alu 11 309 -3 456 224 53 110 chr3 52467060 52467083 -165570075 - MER112 DNA MER1_type -69 191 168 2128 91 24 17 chr3 52467083 52467418 -165569740 - AluSq SINE Alu 0 337 1 456 224 53 110 chr3 52467418 52467582 -165569576 - MER112 DNA MER1_type -92 168 17 1425 249 36 44 chr3 52468140 52468180 -165568978 - LTR16C LTR ERVL -18 473 434 490 107 13 0 chr3 52468180 52468255 -165568903 - MER116 DNA Mariner 0 80 5 1425 249 36 44 chr3 52468255 52468691 -165568467 - LTR16C LTR ERVL -57 434 1 180 0 0 0 chr3 52469411 52469431 -165567727 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 1552 167 8 8 chr3 52469431 52469670 -165567488 - AluSx SINE Alu -32 280 42 1417 122 0 23 chr3 52469712 52469926 -165567232 + AluSg/x SINE Alu 104 312 0 426 196 350 7 chr3 52470052 52470195 -165566963 + MIR SINE MIR 34 225 -37 524 130 76 0 chr3 52470593 52470685 -165566473 + MER30 DNA MER1_type 132 230 0 215 171 0 0 chr3 52470693 52470728 -165566430 - MIR SINE MIR -64 144 110 307 233 78 43 chr3 52470820 52470936 -165566222 - L2 LINE L2 -3 3269 3150 194 297 189 18 chr3 52471002 52471113 -165566045 + MIR3 SINE MIR 14 143 -65 3230 176 59 32 chr3 52472144 52472261 -165564897 + L1MC4a LINE L1 6896 7008 -800 1957 168 3 0 chr3 52472261 52472565 -165564593 - AluJb SINE Alu -7 305 1 3230 176 59 32 chr3 52472565 52473246 -165563912 + L1MC4a LINE L1 7008 7715 -93 1874 162 45 8 chr3 52473246 52473267 -165563891 - MER57A LTR ERV1 0 403 384 1740 157 20 20 chr3 52473267 52473566 -165563592 + AluSx SINE Alu 1 299 -13 1874 162 45 8 chr3 52473566 52473903 -165563255 - MER57A LTR ERV1 -19 384 32 25 83 0 0 chr3 52473903 52473963 -165563195 + AT_rich Low_complexity Low_complexity 1 60 0 314 153 141 12 chr3 52473993 52474078 -165563080 + L1MD3 LINE L1 7884 7979 -16 459 252 49 21 chr3 52474392 52474535 -165562623 - MIR SINE MIR -102 160 14 192 278 0 0 chr3 52474575 52474611 -165562547 - L2 LINE L2 -11 3261 3226 216 319 131 42 chr3 52474738 52474929 -165562229 - L2 LINE L2 -18 3254 3047 355 270 46 31 chr3 52475767 52475907 -165561251 + MIR3 SINE MIR 63 206 -2 258 326 123 3 chr3 52476119 52476273 -165560885 - MIR SINE MIR -69 139 5 331 215 37 80 chr3 52476750 52476913 -165560245 + L1ME4a LINE L1 5965 6120 -1 742 249 77 0 chr3 52477269 52477450 -165559708 + MIR SINE MIR 14 208 -54 833 176 0 0 chr3 52477481 52477612 -165559546 - FLAM_A SINE Alu -2 131 1 799 246 77 5 chr3 52477640 52477835 -165559323 + MIR SINE MIR 5 213 -49 508 164 97 168 chr3 52478214 52478440 -165558718 + MER63A DNA MER1_type 1 210 0 395 278 107 37 chr3 52478582 52478769 -165558389 + MIR SINE MIR 54 253 -9 2405 112 0 0 chr3 52478900 52479205 -165557953 - AluSq SINE Alu -8 305 1 554 259 0 51 chr3 52481500 52481658 -165555500 - MIR SINE MIR -12 250 101 30 89 0 0 chr3 52481716 52481795 -165555363 + AT_rich Low_complexity Low_complexity 1 79 0 30742 88 6 15 chr3 52481891 52483431 -165553727 + L1PA7 LINE L1 625 2176 -4293 2455 70 0 10 chr3 52483431 52483730 -165553428 - AluY SINE Alu -15 296 1 30742 88 6 15 chr3 52483730 52488066 -165549092 + L1PA7 LINE L1 2176 6464 -5 261 267 158 15 chr3 52489759 52490032 -165547126 + L2 LINE L2 1869 2180 -1134 1144 122 0 122 chr3 52490055 52490214 -165546944 - AluSg/x SINE Alu -41 269 141 2348 103 0 7 chr3 52490214 52490524 -165546634 - AluSc SINE Alu -1 308 1 1144 122 0 122 chr3 52490524 52490577 -165546581 - AluSg/x SINE Alu -169 141 83 754 253 193 48 chr3 52490578 52490713 -165546445 + L2 LINE L2 2609 2723 -590 1742 173 40 121 chr3 52490713 52490928 -165546230 - LTR54 LTR ERV1 0 510 279 1888 167 3 0 chr3 52490928 52491222 -165545936 - AluJo SINE Alu -17 295 1 1742 173 40 121 chr3 52491222 52491561 -165545597 - LTR54 LTR ERV1 -231 279 1 754 253 193 48 chr3 52491561 52492062 -165545096 + L2 LINE L2 2723 3310 -3 327 241 0 13 chr3 52492627 52492706 -165544452 + MLT1K LTR MaLR 167 244 -344 495 255 68 12 chr3 52492826 52492987 -165544171 + MLT1K LTR MaLR 419 588 0 407 187 140 19 chr3 52493272 52493379 -165543779 + L2 LINE L2 3194 3313 0 195 42 0 0 chr3 52493385 52493409 -165543749 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 248 195 0 49 chr3 52493914 52493996 -165543162 + (TG)n Simple_repeat Simple_repeat 1 78 0 1819 148 67 0 chr3 52494051 52494335 -165542823 - AluSx SINE Alu -9 303 1 213 315 34 0 chr3 52495793 52495882 -165541276 - MIR SINE MIR -79 129 38 190 313 208 0 chr3 52496166 52496262 -165540896 - MIR SINE MIR -62 146 31 1801 115 123 0 chr3 52497150 52497411 -165539747 + AluSg SINE Alu 1 293 -17 1181 196 33 57 chr3 52497429 52497705 -165539453 + MER33 DNA MER1_type 1 269 -2316 935 190 0 0 chr3 52497705 52497868 -165539290 + FRAM SINE Alu 1 163 -3 1181 196 33 57 chr3 52497868 52497923 -165539235 + MER33 DNA MER1_type 269 324 0 755 208 36 6 chr3 52500379 52500547 -165536611 + MIR SINE MIR 89 261 -1 224 289 79 0 chr3 52501014 52501090 -165536068 - MIR3 SINE MIR 0 208 127 490 316 29 7 chr3 52501688 52501824 -165535334 - L2 LINE L2 0 3272 3134 12237 112 59 11 chr3 52501862 52503035 -165534123 + Tigger1 DNA MER2_type 15 1131 -1287 1713 169 31 0 chr3 52503035 52503325 -165533833 + AluJb SINE Alu 1 299 -13 12237 112 59 11 chr3 52503325 52504442 -165532716 + Tigger1 DNA MER2_type 1131 2418 0 353 333 76 7 chr3 52506074 52506218 -165530940 + MIR3 SINE MIR 45 198 -10 410 227 23 0 chr3 52506444 52506532 -165530626 - MER68 LTR ERV1 -12 550 461 1876 214 54 31 chr3 52506653 52507098 -165530060 - MER68 LTR ERV1 -106 456 2 437 335 75 0 chr3 52507099 52507260 -165529898 - MIR SINE MIR -88 174 2 261 271 43 0 chr3 52507272 52507342 -165529816 + L2 LINE L2 2922 2994 -319 2330 114 39 25 chr3 52507342 52507701 -165529457 + THE1B LTR MaLR 1 364 0 643 200 0 0 chr3 52507706 52507826 -165529332 - FLAM_A SINE Alu -2 140 21 240 329 72 12 chr3 52507851 52508018 -165529140 + L2 LINE L2 2996 3172 -141 1857 116 7 27 chr3 52508036 52508388 -165528770 + AluSx SINE Alu 3 312 0 682 215 84 42 chr3 52508400 52508556 -165528602 + MER63A DNA MER1_type 1 168 -1520 2312 109 95 14 chr3 52508556 52508904 -165528254 + MER83B LTR ERV1 3 378 0 682 215 84 42 chr3 52508904 52508938 -165528220 + MER63A DNA MER1_type 168 199 -11 578 225 36 0 chr3 52508941 52509052 -165528106 + L2 LINE L2 3199 3313 0 344 272 29 10 chr3 52509095 52509198 -165527960 - MIR SINE MIR -118 144 40 2267 130 48 16 chr3 52509610 52509986 -165527172 - MER61D LTR ERV1 0 501 114 2565 205 22 25 chr3 52510221 52510605 -165526553 - MER44D DNA MER2_type -1882 605 167 2907 90 76 2 chr3 52510605 52511038 -165526120 + MER4C LTR ERV1 1 465 0 2565 205 22 25 chr3 52511038 52511205 -165525953 - MER44D DNA MER2_type -2320 167 1 2928 202 161 31 chr3 52511594 52512041 -165525117 + L1M4 LINE L1 6 394 -5990 184 30 61 0 chr3 52512041 52512074 -165525084 + T-rich Low_complexity Low_complexity 1 35 0 1991 93 0 0 chr3 52512074 52512342 -165524816 - AluY SINE Alu -33 278 11 2928 202 161 31 chr3 52512342 52512719 -165524439 + L1M4 LINE L1 393 938 -5446 1441 68 16 0 chr3 52512719 52512909 -165524249 - MER75B DNA T2_type 0 243 51 1100 180 14 42 chr3 52513034 52513323 -165523835 + L1M4 LINE L1 935 1215 -5169 327 342 7 0 chr3 52514012 52514167 -165522991 + (TGG)n Simple_repeat Simple_repeat 1 156 0 1017 186 13 22 chr3 52514687 52514820 -165522338 + L1M4 LINE L1 1184 1316 -5068 4716 60 78 7 chr3 52514820 52515436 -165521722 - PABL_A LTR ERV1 0 660 1 1017 186 13 22 chr3 52515436 52515533 -165521625 + L1M4 LINE L1 1316 1412 -4972 2735 150 69 9 chr3 52515540 52516074 -165521084 + L1MB3 LINE L1 5471 6036 -147 1391 258 25 16 chr3 52516079 52516118 -165521040 + L1M4 LINE L1 2602 2639 -3743 4789 94 12 57 chr3 52516118 52516584 -165520574 - LTR8 LTR ERV1 0 691 267 2001 110 43 0 chr3 52516584 52516865 -165520293 - AluSq SINE Alu -20 293 1 4789 94 12 57 chr3 52516865 52517121 -165520037 - LTR8 LTR ERV1 -424 267 1 1391 258 25 16 chr3 52517121 52517565 -165519593 + L1M4 LINE L1 2639 3089 -3293 * 1969 219 35 8 chr3 52517532 52518044 -165519114 + L1M4 LINE L1 4378 4903 -1479 1582 152 70 84 chr3 52518051 52518369 -165518789 - MLT1A1 LTR MaLR 0 365 51 1776 109 68 0 chr3 52518369 52518634 -165518524 + AluSx SINE Alu 16 298 -14 1582 152 70 84 chr3 52518634 52518684 -165518474 - MLT1A1 LTR MaLR -314 51 2 354 176 0 0 chr3 52518684 52518752 -165518406 - MLT1A1-int LTR MaLR -13 1722 1655 808 159 0 0 chr3 52518775 52518901 -165518257 - FLAM_C SINE Alu -17 126 1 1040 109 73 12 chr3 52518902 52519067 -165518091 - MLT1A1-int LTR MaLR -68 1667 1493 2693 159 14 2 chr3 52519067 52519636 -165517522 - MER72 LTR ERV1 0 722 115 1981 187 15 36 chr3 52519668 52520059 -165517099 - L1M4 LINE L1 -6157 385 3 1989 251 46 51 chr3 52520083 52520802 -165516356 + MER50-int LTR ERV1 890 1733 -5472 * 6293 192 31 50 chr3 52520792 52522126 -165515032 + MER50-int LTR ERV1 1429 2737 -4468 1007 307 81 65 chr3 52522122 52523482 -165513676 + MER50-int LTR ERV1 3761 5142 -1949 * 2037 233 99 41 chr3 52523554 52523704 -165513454 + MER50 LTR ERV1 66 206 -528 231 61 0 0 chr3 52523704 52523737 -165513421 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1883 107 30 7 chr3 52523742 52524013 -165513145 - AluSx SINE Alu -35 277 1 2037 233 99 41 chr3 52524013 52524462 -165512696 + MER50 LTR ERV1 209 706 -28 288 0 0 0 chr3 52524648 52524680 -165512478 + (TG)n Simple_repeat Simple_repeat 2 33 0 3791 144 17 66 chr3 52525030 52525754 -165511404 - LTR8 LTR ERV1 -3 688 1 327 362 0 0 chr3 52526021 52526126 -165511032 + MER50-int LTR ERV1 6274 6378 -423 1507 171 68 0 chr3 52526376 52526628 -165510530 + REP3 LTR ERV 1 269 -293 1955 108 31 0 chr3 52526884 52527170 -165509988 - AluSx SINE Alu -17 295 1 290 167 150 0 chr3 52527172 52527232 -165509926 + REP3 LTR ERV 494 562 0 266 119 0 68 chr3 52527249 52527308 -165509850 + L1MDa LINE L1 2078 2132 -4408 438 323 26 7 chr3 52527335 52527490 -165509668 - L3 LINE CR1 -973 604 447 487 194 29 0 chr3 52527759 52527862 -165509296 + MER89 LTR ERV1 2 107 -452 1011 107 23 11 chr3 52527975 52528152 -165509006 + CT-rich Low_complexity Low_complexity 2 180 0 581 220 129 0 chr3 52528154 52528444 -165508714 - AluJb SINE Alu 0 470 164 228 86 0 0 chr3 52528454 52528489 -165508669 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 1744 142 40 25 chr3 52528508 52528831 -165508327 + MER89 LTR ERV1 232 559 0 257 311 0 0 chr3 52528859 52528920 -165508238 + MIR SINE MIR 81 141 -67 3347 100 12 106 chr3 52528951 52529620 -165507538 + MER4B LTR ERV1 2 779 0 222 298 26 73 chr3 52530601 52530752 -165506406 - L2 LINE L2 -219 3053 2910 372 263 340 0 chr3 52531384 52531578 -165505580 + MIR SINE MIR 2 261 -1 6858 93 53 1 chr3 52532978 52533972 -165503186 - SVA Other Other -5 1381 336 1071 140 10 47 chr3 52534005 52534198 -165502960 - MER39B LTR ERV1 -467 186 1 3392 120 12 4 chr3 52534470 52534979 -165502179 + LTR10D LTR ERV1 1 513 0 1808 134 40 0 chr3 52535000 52535277 -165501881 - AluSx SINE Alu -24 288 1 3961 186 22 53 chr3 52535318 52536303 -165500855 + LTR5 LTR ERVK 1 955 -14 321 328 83 22 chr3 52536547 52536727 -165500431 - MIR3 SINE MIR -17 191 1 2064 130 0 7 chr3 52536808 52537116 -165500042 - AluSx SINE Alu -6 306 1 22 0 0 0 chr3 52537228 52537250 -165499908 + AT_rich Low_complexity Low_complexity 1 22 0 2035 139 156 8 chr3 52537450 52537823 -165499335 - MSTA LTR MaLR 0 428 1 180 273 130 65 chr3 52538793 52538947 -165498211 - L2 LINE L2 -10 3303 3140 637 284 113 10 chr3 52540039 52540243 -165496915 + MIR SINE MIR 36 260 -2 288 0 0 0 chr3 52540317 52540349 -165496809 + (TG)n Simple_repeat Simple_repeat 2 33 0 1999 123 3 3 chr3 52540689 52540982 -165496176 - AluSx SINE Alu -16 296 4 519 313 71 19 chr3 52541104 52541315 -165495843 + MIR SINE MIR 33 254 -8 209 328 0 33 chr3 52541363 52541424 -165495734 + MIR SINE MIR 72 130 -78 533 303 197 31 chr3 52541609 52542351 -165494807 + L2 LINE L2 1543 2407 -907 244 270 48 0 chr3 52542482 52542545 -165494613 - L2 LINE L2 -282 3031 2966 2094 118 0 0 chr3 52542700 52542989 -165494169 - AluSx SINE Alu -23 289 1 21 0 0 0 chr3 52544860 52544881 -165492277 + AT_rich Low_complexity Low_complexity 1 21 0 2877 108 17 14 chr3 52544890 52545306 -165491852 - LTR8 LTR ERV1 0 691 275 318 26 0 0 chr3 52545307 52545346 -165491812 + (TCTCCC)n Simple_repeat Simple_repeat 2 40 0 5423 67 26 63 chr3 52545347 52546503 -165490655 + SVA Other Other 2 868 -520 958 76 14 38 chr3 52546521 52546731 -165490427 + SVA Other Other 590 794 -592 6751 58 5 40 chr3 52546746 52547735 -165489423 + SVA Other Other 433 1386 0 992 102 7 15 chr3 52547743 52547880 -165489278 - LTR8 LTR ERV1 -400 291 156 1353 201 33 10 chr3 52547881 52548180 -165488978 - AluSx SINE Alu -6 306 1 372 88 211 0 chr3 52548190 52548247 -165488911 - LTR8 LTR ERV1 -640 51 1 1993 114 9 22 chr3 52548469 52548785 -165488373 + AluSx SINE Alu 1 312 0 203 221 8 172 chr3 52548887 52549009 -165488149 + L2 LINE L2 2914 3015 -257 249 310 101 47 chr3 52549823 52549952 -165487206 + L2 LINE L2 3174 3309 -4 848 148 7 0 chr3 52550306 52550448 -165486710 + AluJb SINE Alu 135 277 -35 671 232 52 80 chr3 52550600 52550889 -165486269 - LTR68 LTR ERV1 -459 281 1 268 320 78 33 chr3 52551072 52551225 -165485933 - MIR3 SINE MIR -9 199 40 289 263 115 40 chr3 52551783 52551940 -165485218 - MER5A DNA MER1_type -3 186 2 962 216 111 66 chr3 52553298 52553802 -165483356 - PABL_B LTR ERV1 0 667 1 5355 112 29 17 chr3 52554112 52554881 -165482277 - MER4E LTR ERV1 -1 778 1 2396 85 7 0 chr3 52555093 52555400 -165481758 + AluY SINE Alu 2 310 -1 188 286 153 10 chr3 52555429 52555527 -165481631 + L2 LINE L2 3201 3312 -1 240 250 132 0 chr3 52555790 52555858 -165481300 + MIR SINE MIR 69 145 -117 3588 57 69 59 chr3 52556029 52556603 -165480555 - MER41A LTR ERV1 -11 543 3 183 300 0 33 chr3 52556618 52556678 -165480480 - MIR SINE MIR -170 92 35 622 120 0 11 chr3 52557053 52557145 -165480013 - MER39 LTR ERV1 0 707 617 1485 153 4 0 chr3 52557147 52557375 -165479783 + AluJb SINE Alu 84 312 0 411 135 0 14 chr3 52557415 52557489 -165479669 - AluSc SINE Alu -8 301 229 479 222 111 0 chr3 52557746 52557854 -165479304 - AluJb SINE Alu -191 121 2 395 245 52 3 chr3 52558336 52558492 -165478666 - L1MCa LINE L1 -4839 1768 1416 1803 194 70 38 chr3 52559741 52559898 -165477260 - MLT2B3 LTR ERVL -124 430 279 1731 159 3 30 chr3 52559898 52560199 -165476959 - AluJb SINE Alu -19 293 1 1803 194 70 38 chr3 52560199 52560458 -165476700 - MLT2B3 LTR ERVL -275 279 1 2411 207 9 25 chr3 52560724 52561530 -165475628 + L1ME LINE L1 4999 5793 -373 349 241 0 58 chr3 52561530 52561617 -165475541 + L1ME3A LINE L1 5535 5616 -554 258 170 21 0 chr3 52561622 52561669 -165475489 + L1ME3A LINE L1 5678 5725 -445 1241 204 82 41 chr3 52561669 52562036 -165475122 + LTR52 LTR ERVL 1 382 -39 778 217 117 41 chr3 52562080 52562370 -165474788 + L1ME3A LINE L1 5721 6032 -138 2545 52 3 7 chr3 52562654 52562962 -165474196 + AluY SINE Alu 1 307 -4 421 262 206 7 chr3 52563196 52563337 -165473821 - MIR SINE MIR -89 173 5 2396 93 0 6 chr3 52563354 52563666 -165473492 - AluSx SINE Alu -2 310 1 1488 173 126 74 chr3 52563671 52564117 -165473041 - Charlie4a DNA MER1_type -7 501 33 2271 85 19 0 chr3 52564662 52564978 -165472180 - SVA Other Other -1052 334 13 493 288 90 28 chr3 52565432 52565831 -165471327 - MLT1K LTR MaLR -8 580 139 436 144 40 6 chr3 52566739 52566913 -165470245 + (TA)n Simple_repeat Simple_repeat 1 180 0 550 90 57 13 chr3 52566927 52567144 -165470014 + (TA)n Simple_repeat Simple_repeat 1 226 0 24 0 0 0 chr3 52567144 52567168 -165469990 + AT_rich Low_complexity Low_complexity 1 24 0 678 115 35 0 chr3 52567175 52567349 -165469809 + (TA)n Simple_repeat Simple_repeat 1 180 0 2166 107 0 10 chr3 52567349 52567640 -165469518 - AluSx SINE Alu -24 288 1 23 0 0 0 chr3 52568081 52568104 -165469054 + AT_rich Low_complexity Low_complexity 1 23 0 253 324 18 113 chr3 52568189 52568411 -165468747 - L2 LINE L2 -33 3239 3039 724 275 81 14 chr3 52570138 52570360 -165466798 - MIR SINE MIR -9 253 17 2329 99 0 0 chr3 52570958 52571261 -165465897 - AluY SINE Alu -8 303 1 841 281 96 71 chr3 52571718 52572269 -165464889 + MLT1K LTR MaLR 2 566 -22 2286 113 3 0 chr3 52572423 52572724 -165464434 + AluSp SINE Alu 2 303 -10 2274 138 52 8 chr3 52572794 52573163 -165463995 - MER61D LTR ERV1 -3 498 114 13506 150 72 47 chr3 52573204 52575232 -165461926 - MER61D-int LTR ERV1 0 6940 4963 1997 136 3 3 chr3 52575232 52575526 -165461632 + AluSx SINE Alu 1 294 -18 13506 150 72 47 chr3 52575526 52576157 -165461001 - MER61D-int LTR ERV1 -1977 4963 4349 8240 18 23 0 chr3 52576157 52577079 -165460079 - L1PA3 LINE L1 -3 6152 5227 13506 150 72 47 chr3 52577079 52577953 -165459205 - MER61D-int LTR ERV1 -2591 4349 3498 2110 100 50 0 chr3 52577953 52578234 -165458924 - AluSq SINE Alu -18 295 1 13506 150 72 47 chr3 52578234 52578395 -165458763 - MER61D-int LTR ERV1 -3442 3498 2615 1556 140 0 9 chr3 52578387 52578616 -165458542 - MER61D-int LTR ERV1 -4979 2439 2213 * 1307 204 22 18 chr3 52578618 52578892 -165458266 - MER21B-int LTR ERV1 -642 4575 4301 1012 127 82 5 chr3 52578898 52579143 -165458015 - MER21B-int LTR ERV1 -1092 4125 695 1128 167 3 105 chr3 52579147 52579452 -165457706 - MER21B-int LTR ERV1 -4763 454 181 1152 221 109 17 chr3 52579873 52580167 -165456991 - MER21B LTR ERV1 -1 862 542 690 249 83 0 chr3 52581105 52581298 -165455860 + MER74B LTR ERVL 411 619 -3 486 257 134 56 chr3 52581320 52581556 -165455602 - L2 LINE L2 -150 3163 2900 279 0 0 0 chr3 52581556 52581587 -165455571 + (GA)n Simple_repeat Simple_repeat 2 32 0 486 257 134 56 chr3 52581587 52581634 -165455524 - L2 LINE L2 -413 2900 2858 2369 118 2 72 chr3 52581634 52581806 -165455352 + MLT1B LTR MaLR 6 188 -202 2333 90 7 0 chr3 52581806 52582106 -165455052 + AluSx SINE Alu 5 306 -6 2369 118 2 72 chr3 52582106 52582347 -165454811 + MLT1B LTR MaLR 188 390 0 368 328 8 8 chr3 52582349 52582474 -165454684 - L2 LINE L2 -467 2847 2723 367 252 42 91 chr3 52582537 52582680 -165454478 - MLT1J LTR MaLR -369 142 7 1448 199 143 19 chr3 52583340 52583712 -165453446 + LTR52 LTR ERVL 1 418 -3 191 273 260 50 chr3 52583787 52583951 -165453207 - L2 LINE L2 -16 3297 3169 2450 82 3 0 chr3 52583951 52584255 -165452903 - AluSx SINE Alu -7 305 1 191 273 260 50 chr3 52584255 52584332 -165452826 - L2 LINE L2 -144 3169 3005 2184 138 0 0 chr3 52584344 52584655 -165452503 - AluSx SINE Alu -1 311 1 2319 213 80 62 chr3 52584658 52584735 -165452423 - L1MDb LINE L1 -4633 2308 2234 1958 151 7 0 chr3 52584735 52585033 -165452125 + AluSx SINE Alu 1 300 -12 2319 213 80 62 chr3 52585033 52585153 -165452005 - L1MDb LINE L1 -4707 2234 2118 1600 198 10 32 chr3 52585153 52585467 -165451691 - AluJo SINE Alu -5 307 1 2319 213 80 62 chr3 52585467 52586273 -165450885 - L1MDb LINE L1 -4823 2118 1329 2165 138 0 0 chr3 52586520 52586831 -165450327 - AluSx SINE Alu -1 311 1 335 356 64 44 chr3 52587172 52587470 -165449688 - L1MDb LINE L1 -6210 731 428 2453 248 54 38 chr3 52587475 52587580 -165449578 - L1MDb LINE L1 -4000 3122 3020 2276 107 0 19 chr3 52587580 52587889 -165449269 - AluSg SINE Alu -7 303 1 2453 248 54 38 chr3 52587889 52588706 -165448452 - L1MDb LINE L1 -4102 3020 2185 220 208 14 14 chr3 52588725 52588797 -165448361 + (CATATA)n Simple_repeat Simple_repeat 3 74 0 1543 248 65 15 chr3 52588826 52589238 -165447920 - L1MDb LINE L1 -5168 1255 823 859 262 60 40 chr3 52589532 52589902 -165447256 - L1MDb LINE L1 -6017 406 30 340 295 23 0 chr3 52593539 52593668 -165443490 + (TA)n Simple_repeat Simple_repeat 1 132 0 2678 250 98 12 chr3 52593668 52594917 -165442241 - L1ME3 LINE L1 -1 6161 4802 26 30 0 0 chr3 52597049 52597082 -165440076 + AT_rich Low_complexity Low_complexity 1 33 0 307 280 30 24 chr3 52597216 52597384 -165439774 - L1MC5 LINE L1 -897 7064 6896 35 41 0 0 chr3 52597433 52597482 -165439676 + AT_rich Low_complexity Low_complexity 1 49 0 1219 214 65 19 chr3 52597488 52597810 -165439348 - L1MB8 LINE L1 -14 6164 5828 1856 202 35 3 chr3 52597812 52598344 -165438814 - L1MB8 LINE L1 -492 5692 5146 1676 226 83 12 chr3 52598334 52598816 -165438342 - L1MB8 LINE L1 -1888 4258 3743 * 1465 186 22 7 chr3 52599339 52599614 -165437544 + AluJo SINE Alu 4 282 -30 1675 207 27 15 chr3 52599692 52600021 -165437137 + MER58B DNA MER1_type 9 341 0 1826 166 0 3 chr3 52601083 52601372 -165435786 + AluJo SINE Alu 1 288 -24 2404 206 28 71 chr3 52602948 52603527 -165433631 - MLT2B3 LTR ERVL 0 554 1 402 268 80 0 chr3 52603777 52603889 -165433269 - MER5C DNA MER1_type -200 124 4 2209 121 3 0 chr3 52604142 52604448 -165432710 - AluSq SINE Alu -6 307 1 319 292 58 8 chr3 52604956 52605076 -165432082 - MIR SINE MIR -7 255 130 2499 45 7 0 chr3 52605726 52606018 -165431140 - AluY SINE Alu -17 294 1 1934 153 3 23 chr3 52606395 52606703 -165430455 - AluJb SINE Alu -8 304 3 300 343 31 28 chr3 52606778 52607053 -165430105 - L1MC/D LINE L1 -458 5663 5483 1245 151 29 109 chr3 52607261 52607595 -165429563 + AluYb8 SINE Alu 1 309 0 1102 184 78 25 chr3 52608119 52608317 -165428841 - L1MC1 LINE L1 -18 6315 6096 1848 119 8 4 chr3 52608317 52608585 -165428573 - AluSx SINE Alu -43 269 1 1102 184 78 25 chr3 52608585 52608669 -165428489 - L1MC1 LINE L1 -237 6096 6018 2197 102 3 0 chr3 52609255 52609539 -165427619 - AluSx SINE Alu -27 285 1 2341 119 33 22 chr3 52609836 52610196 -165426962 - THE1B LTR MaLR 0 364 1 1023 193 66 103 chr3 52610708 52611087 -165426071 - MLT1A1 LTR MaLR 0 365 1 689 220 55 55 chr3 52611462 52611753 -165425405 - L1M4 LINE L1 -5392 1150 860 246 358 0 0 chr3 52611823 52611946 -165425212 - L1M4 LINE L1 -6406 136 14 1666 214 60 64 chr3 52612058 52612557 -165424601 + MLT1D LTR MaLR 1 497 -8 1692 224 75 126 chr3 52612595 52612877 -165424281 - L1M4 LINE L1 -1808 4338 4043 1173 51 0 13 chr3 52612877 52613033 -165424125 - L1PA6 LINE L1 0 6154 6001 1692 224 75 126 chr3 52613033 52613153 -165424005 - L1M4 LINE L1 -2103 4043 3918 1823 186 3 22 chr3 52613153 52613471 -165423687 - AluJo SINE Alu 0 312 1 1692 224 75 126 chr3 52613471 52614939 -165422219 - L1M4 LINE L1 -2228 3918 2562 365 291 61 99 chr3 52615513 52615857 -165421301 + L2 LINE L2 2941 3271 -1 249 337 12 0 chr3 52615912 52615995 -165421163 - L2 LINE L2 0 3313 3230 379 295 72 57 chr3 52616877 52617070 -165420088 - MIR SINE MIR -45 217 22 1738 150 17 24 chr3 52617188 52617482 -165419676 + AluJo SINE Alu 10 301 -11 976 234 151 21 chr3 52617615 52617987 -165419171 - L1ME3 LINE L1 -88 6074 5655 265 176 27 0 chr3 52617995 52618069 -165419089 + (TA)n Simple_repeat Simple_repeat 2 77 0 201 171 0 0 chr3 52618109 52618144 -165419014 + (TA)n Simple_repeat Simple_repeat 2 36 0 5756 137 70 1 chr3 52618277 52619268 -165417890 + Tigger1 DNA MER2_type 49 1107 -1311 2055 115 3 23 chr3 52619413 52619718 -165417440 - AluSg SINE Alu -11 299 1 473 250 102 14 chr3 52620007 52620149 -165417009 - MIR SINE MIR -61 147 18 2006 76 14 14 chr3 52620236 52620524 -165416634 - AluY SINE Alu -23 288 1 221 309 11 0 chr3 52620592 52620686 -165416472 + (TA)n Simple_repeat Simple_repeat 2 96 0 275 0 0 28 chr3 52620696 52620732 -165416426 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 25 51 0 0 chr3 52620806 52620845 -165416313 + AT_rich Low_complexity Low_complexity 1 39 0 1692 114 143 0 chr3 52621101 52621374 -165415784 + AluSx SINE Alu 1 312 0 1574 113 47 8 chr3 52622475 52622732 -165414426 + MER46B DNA MER2_type 94 235 -1 500 227 114 17 chr3 52622732 52622904 -165414254 + MER2 DNA MER2_type 156 344 -1 2589 164 119 12 chr3 52622938 52623535 -165413623 - L1MB7 LINE L1 -79 6105 5445 7217 210 46 30 chr3 52623535 52624107 -165413051 - L1MB7 LINE L1 -1287 4859 4298 330 26 0 0 chr3 52624107 52624146 -165413012 + (TG)n Simple_repeat Simple_repeat 2 40 0 7217 210 46 30 chr3 52624146 52625762 -165411396 - L1MB7 LINE L1 -1848 4298 2636 25 0 0 0 chr3 52626601 52626626 -165410532 + AT_rich Low_complexity Low_complexity 1 25 0 2365 109 0 3 chr3 52626626 52626939 -165410219 - AluSx SINE Alu 0 312 1 241 304 109 29 chr3 52628144 52628282 -165408876 - MIR3 SINE MIR -58 150 2 810 133 30 22 chr3 52628809 52628944 -165408214 - AluSq/x SINE Alu -176 136 1 222 150 0 0 chr3 52629559 52629599 -165407559 + (A)n Simple_repeat Simple_repeat 1 40 0 381 161 0 0 chr3 52629920 52629982 -165407176 + LTR41 LTR ERVL 82 143 -630 425 216 94 59 chr3 52630111 52630365 -165406793 + LTR41 LTR ERVL 493 755 -18 2089 138 3 25 chr3 52630736 52631056 -165406102 + AluSq SINE Alu 1 313 0 1322 133 9 33 chr3 52631233 52631390 -165405768 - AluJo SINE Alu -20 292 140 2101 149 0 0 chr3 52631390 52631691 -165405467 - AluJb SINE Alu -9 303 3 1322 133 9 33 chr3 52631691 52631744 -165405414 - AluJo SINE Alu -172 140 87 674 134 51 177 chr3 52631744 52631905 -165405253 - MER33 DNA MER1_type -2306 318 176 921 60 0 0 chr3 52631905 52632021 -165405137 - L1PB1 LINE L1 -1 6150 6035 674 134 51 177 chr3 52632021 52632169 -165404989 - MER33 DNA MER1_type -2448 176 11 1160 91 91 27 chr3 52632376 52632480 -165404678 + Tigger1 DNA MER2_type 80 176 -2242 2276 104 16 0 chr3 52632480 52632787 -165404371 - AluSp SINE Alu -1 312 1 1160 91 91 27 chr3 52632787 52632901 -165404257 + Tigger1 DNA MER2_type 176 312 -2106 806 219 0 44 chr3 52632901 52633084 -165404074 - AluJb SINE Alu -16 296 122 22 0 0 0 chr3 52633084 52633106 -165404052 + AT_rich Low_complexity Low_complexity 1 22 0 2334 94 0 3 chr3 52633106 52633404 -165403754 - AluSc SINE Alu -10 299 3 2276 105 3 0 chr3 52633409 52633713 -165403445 - AluSx SINE Alu -7 305 1 2329 117 33 22 chr3 52634010 52634370 -165402788 - THE1B LTR MaLR 0 364 1 1023 193 66 103 chr3 52634882 52635261 -165401897 - MLT1A1 LTR MaLR 0 365 1 689 220 55 55 chr3 52635636 52635927 -165401231 - L1M4 LINE L1 -5392 1150 860 246 358 0 0 chr3 52635997 52636120 -165401038 - L1M4 LINE L1 -6406 136 14 1658 215 60 64 chr3 52636234 52636732 -165400426 + MLT1D LTR MaLR 2 497 -8 1756 227 74 123 chr3 52636770 52637052 -165400106 - L1M4 LINE L1 -1808 4338 4044 1173 51 0 13 chr3 52637052 52637208 -165399950 - L1PA6 LINE L1 0 6154 6001 1756 227 74 123 chr3 52637208 52637327 -165399831 - L1M4 LINE L1 -2102 4044 3921 1823 186 3 22 chr3 52637327 52637645 -165399513 - AluJo SINE Alu 0 312 1 1756 227 74 123 chr3 52637645 52639110 -165398048 - L1M4 LINE L1 -2225 3921 2562 365 291 61 99 chr3 52639684 52640028 -165397130 + L2 LINE L2 2941 3271 -1 249 337 12 0 chr3 52640083 52640166 -165396992 - L2 LINE L2 0 3313 3230 379 295 72 57 chr3 52641048 52641241 -165395917 - MIR SINE MIR -45 217 22 1738 150 17 24 chr3 52641359 52641653 -165395505 + AluJo SINE Alu 10 301 -11 976 234 151 21 chr3 52641786 52642158 -165395000 - L1ME3 LINE L1 -88 6074 5655 265 176 27 0 chr3 52642166 52642240 -165394918 + (TA)n Simple_repeat Simple_repeat 2 77 0 201 171 0 0 chr3 52642280 52642315 -165394843 + (TA)n Simple_repeat Simple_repeat 1 35 0 11997 117 105 34 chr3 52642448 52644662 -165392496 + Tigger1 DNA MER2_type 49 2418 0 3767 241 96 32 chr3 52644662 52645084 -165392074 - L1ME3 LINE L1 -608 5562 5168 1691 144 99 0 chr3 52645084 52645368 -165391790 - AluSx SINE Alu 0 312 1 3767 241 96 32 chr3 52645368 52645688 -165391470 - L1ME3 LINE L1 -1002 5168 4870 1664 179 0 13 chr3 52645688 52645989 -165391169 - AluJb SINE Alu -15 297 1 3767 241 96 32 chr3 52645989 52647341 -165389817 - L1ME3 LINE L1 -1300 4870 3325 1157 202 77 52 chr3 52647341 52647742 -165389416 - LTR52 LTR ERVL -3 418 8 32 43 0 0 chr3 52648183 52648229 -165388929 + AT_rich Low_complexity Low_complexity 1 46 0 1761 100 8 28 chr3 52648363 52648614 -165388544 - AluSg SINE Alu -15 295 50 416 226 13 116 chr3 52648877 52649032 -165388126 + MIR SINE MIR 117 255 -7 426 132 40 0 chr3 52649128 52649204 -165387954 - MER81 DNA DNA 0 114 36 305 161 16 0 chr3 52650702 52650764 -165386394 - MLT1B LTR MaLR 0 390 328 1880 125 144 6 chr3 52650768 52651121 -165386037 + MER83 LTR ERV1 47 448 0 487 161 4 12 chr3 52651121 52651219 -165385939 - MLT1B LTR MaLR -55 335 220 2216 93 51 0 chr3 52651757 52652089 -165385069 + THE1A LTR MaLR 7 355 0 11935 89 4 1 chr3 52652090 52653664 -165383494 + THE1A-int LTR MaLR 2 1580 0 2156 112 75 31 chr3 52653664 52654013 -165383145 + THE1B LTR MaLR 1 364 0 246 349 32 23 chr3 52654277 52654508 -165382650 - MIR SINE MIR -6 256 30 216 300 125 40 chr3 52655083 52655183 -165381975 - MER5A DNA MER1_type 0 178 68 2929 16 0 0 chr3 52655558 52655872 -165381286 + AluYb8 SINE Alu 1 314 -4 1118 248 46 10 chr3 52655876 52656282 -165380876 - L2 LINE L2 -212 3101 2688 329 224 120 8 chr3 52656505 52656630 -165380528 - MER112 DNA MER1_type -55 205 67 328 308 120 7 chr3 52656885 52657035 -165380123 + MIR SINE MIR 45 216 -46 336 256 13 0 chr3 52660143 52660221 -165376937 + MIR3 SINE MIR 109 187 -21 299 274 0 0 chr3 52660364 52660437 -165376721 + MER5B DNA MER1_type 104 176 -2 243 274 209 9 chr3 52661149 52661379 -165375779 - L1ME4a LINE L1 -113 6008 5733 264 309 130 0 chr3 52661865 52661988 -165375170 + MIR3 SINE MIR 7 145 -63 285 29 0 0 chr3 52663056 52663090 -165374068 + (TC)n Simple_repeat Simple_repeat 1 34 0 260 225 0 11 chr3 52663090 52663179 -165373979 + (CA)n Simple_repeat Simple_repeat 2 89 0 3310 150 26 39 chr3 52663364 52663983 -165373175 - LTR36 LTR ERV1 0 611 1 210 71 0 0 chr3 52664172 52664200 -165372958 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 216 344 86 0 chr3 52664202 52664295 -165372863 - L2 LINE L2 -27 3245 3145 333 0 0 0 chr3 52664309 52664346 -165372812 + (TG)n Simple_repeat Simple_repeat 1 37 0 2740 206 54 21 chr3 52664546 52665254 -165371904 + L1ME1 LINE L1 5436 6166 0 234 258 16 16 chr3 52665257 52665319 -165371839 - L2 LINE L2 -337 2976 2915 192 306 102 0 chr3 52665605 52665713 -165371445 - L2 LINE L2 -774 2540 2422 3954 48 30 4 chr3 52665795 52666295 -165370863 - LTR10D LTR ERV1 0 513 1 2372 112 0 0 chr3 52666470 52666775 -165370383 + AluSx SINE Alu 1 305 -7 1644 119 53 119 chr3 52668484 52668803 -165368355 + AluJo SINE Alu 1 298 -14 310 387 59 0 chr3 52669223 52669342 -165367816 - MIR SINE MIR -91 171 46 855 171 0 20 chr3 52669597 52669743 -165367415 - FLAM_C SINE Alu 0 143 1 273 327 12 6 chr3 52669794 52669956 -165367202 + (CA)n Simple_repeat Simple_repeat 1 163 0 289 236 149 62 chr3 52670747 52670908 -165366250 + MIR SINE MIR 88 262 0 2987 91 12 0 chr3 52671181 52671601 -165365557 - MER57B LTR ERV1 -9 425 1 1736 226 41 4 chr3 52671602 52672066 -165365092 + Charlie4a DNA MER1_type 28 508 0 23 33 0 0 chr3 52672164 52672194 -165364964 + AT_rich Low_complexity Low_complexity 1 30 0 215 150 0 25 chr3 52672194 52672234 -165364924 - L2 LINE L2 -31 3241 3203 194 344 64 16 chr3 52672346 52672471 -165364687 - MIR SINE MIR -60 202 72 1076 176 50 0 chr3 52673316 52673515 -165363643 + MER3 DNA MER1_type 1 209 0 820 244 99 32 chr3 52673662 52673996 -165363162 - Charlie8 DNA MER1_type -2142 275 2 262 349 12 0 chr3 52674693 52674779 -165362379 - MIR SINE MIR 0 262 176 341 262 115 0 chr3 52674821 52674943 -165362215 + L2 LINE L2 3178 3313 0 407 219 140 79 chr3 52674945 52675109 -165362049 - MIR SINE MIR -87 175 2 246 358 32 0 chr3 52676078 52676173 -165360985 - MIR SINE MIR -4 258 161 1109 265 25 12 chr3 52676175 52676500 -165360658 - LTR16C LTR ERVL 0 491 163 366 281 13 46 chr3 52676884 52677037 -165360121 - MIR SINE MIR 0 262 115 1592 206 40 42 chr3 52678086 52678562 -165358596 - MLT1D LTR MaLR 0 505 1 1478 148 72 10 chr3 52680970 52681275 -165355883 + MER33 DNA MER1_type 1 324 0 2302 106 7 0 chr3 52681644 52681946 -165355212 + AluSx SINE Alu 1 304 -8 441 228 20 0 chr3 52682053 52682154 -165355004 + Charlie7 DNA MER1_type 5 107 -2505 339 218 42 78 chr3 52682132 52682325 -165354833 + Charlie7 DNA MER1_type 2427 2612 0 * 243 88 0 0 chr3 52682403 52682437 -165354721 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 602 231 54 32 chr3 52683030 52683216 -165353942 - HAL1 LINE L1 -205 2302 2113 2376 173 33 38 chr3 52683217 52683697 -165353461 - MLT1D LTR MaLR 0 505 28 3943 152 24 22 chr3 52683720 52684438 -165352720 + MER44D DNA MER2_type 15 605 0 285 178 59 30 chr3 52684438 52684539 -165352619 - HAL1 LINE L1 -405 2102 1999 1916 235 55 30 chr3 52684544 52685109 -165352049 - HAL1 LINE L1 -542 1965 1387 237 263 92 25 chr3 52685110 52685267 -165351891 - LTR16A1 LTR ERVL 0 457 317 1530 272 93 13 chr3 52685702 52686231 -165350927 - HAL1 LINE L1 -1932 575 5 207 0 0 0 chr3 52686411 52686434 -165350724 + (CTTG)n Simple_repeat Simple_repeat 1 23 0 544 280 108 14 chr3 52686508 52686730 -165350428 + MIR SINE MIR 28 257 -5 517 257 149 17 chr3 52687455 52687630 -165349528 - MIR SINE MIR -30 232 35 455 292 31 6 chr3 52687934 52688095 -165349063 + MIR SINE MIR 20 184 -78 2508 87 0 0 chr3 52689533 52689832 -165347326 + AluSc SINE Alu 1 299 -10 186 191 71 0 chr3 52696746 52696788 -165340370 + MIR SINE MIR 218 262 0 801 269 58 18 chr3 52697351 52697574 -165339584 + MIR SINE MIR 31 262 0 288 0 0 0 chr3 52698187 52698219 -165338939 + (CA)n Simple_repeat Simple_repeat 2 33 0 246 298 136 31 chr3 52699109 52699367 -165337791 - MLT1H LTR MaLR -171 378 94 480 328 23 11 chr3 52700023 52700200 -165336958 - MIR SINE MIR -31 231 53 428 266 32 16 chr3 52700994 52701118 -165336040 + MIR SINE MIR 73 198 -64 275 308 154 6 chr3 52701232 52701414 -165335744 + L1MC4a LINE L1 5691 5899 -1909 1637 220 91 14 chr3 52701464 52701892 -165335266 + MLT1D LTR MaLR 45 505 0 713 236 20 30 chr3 52702465 52702664 -165334494 + MER74A LTR ERVL 1 197 -361 429 290 93 62 chr3 52702685 52702975 -165334183 + MER74A LTR ERVL 266 622 0 620 290 110 78 chr3 52703149 52703521 -165333637 - L2 LINE L2 -20 3252 2869 342 348 123 4 chr3 52703573 52703826 -165333332 - L2 LINE L2 -635 2679 2397 559 334 84 27 chr3 52705104 52705921 -165331237 + HAL1b LINE L1 42 933 -415 3417 103 32 47 chr3 52706217 52706859 -165330299 - MER4B LTR ERV1 0 779 1 248 258 90 45 chr3 52707914 52708003 -165329155 - MIR3 SINE MIR -6 202 110 1942 115 0 36 chr3 52708424 52708729 -165328429 - AluSx SINE Alu -18 294 1 871 153 51 6 chr3 52709756 52709913 -165327245 - MER5A DNA MER1_type 0 189 26 357 293 61 15 chr3 52710053 52710251 -165326907 - MLT1J LTR MaLR -226 285 79 1838 180 102 15 chr3 52712142 52712543 -165324615 - MER63B DNA MER1_type 0 436 1 244 281 0 0 chr3 52712599 52712663 -165324495 + GA-rich Low_complexity Low_complexity 2 65 0 591 272 99 11 chr3 52713113 52713304 -165323854 + Charlie8 DNA MER1_type 59 266 -2151 437 279 15 29 chr3 52713475 52713611 -165323547 + MIR SINE MIR 12 145 -117 472 194 58 0 chr3 52713742 52713845 -165323313 + MER81 DNA DNA 1 109 -5 297 193 238 29 chr3 52713848 52714069 -165323089 + LTR16C LTR ERVL 177 481 -10 224 298 0 0 chr3 52714115 52714172 -165322986 + MIR SINE MIR 191 247 -15 676 277 87 0 chr3 52714176 52714371 -165322787 - MIR SINE MIR -37 225 14 429 163 89 98 chr3 52714993 52715116 -165322042 - MLT1H LTR MaLR 0 549 428 1226 231 40 25 chr3 52715126 52715447 -165321711 + MLT1E1 LTR MaLR 329 654 0 335 271 104 10 chr3 52715447 52715543 -165321615 - MER96 DNA MER1_type? -17 158 54 2168 120 0 0 chr3 52717616 52717925 -165319233 - AluSx SINE Alu -3 309 1 1947 71 49 77 chr3 52717946 52718271 -165318887 - L1PA15 LINE L1 -6 6159 5844 364 307 132 27 chr3 52718271 52719134 -165318024 - L1M4 LINE L1 -815 5331 4378 222 62 0 0 chr3 52719137 52719169 -165317989 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 7082 16 8 0 chr3 52719169 52719965 -165317193 - L1PA3 LINE L1 -13 6142 5341 378 357 99 18 chr3 52719966 52720238 -165316920 - L1M4 LINE L1 -1764 4382 4089 267 150 0 0 chr3 52720301 52720341 -165316817 + Alu SINE Alu 1 40 -260 240 159 47 140 chr3 52720588 52720613 -165316545 - L1M4 LINE L1 -2171 3975 3949 1681 161 3 23 chr3 52720613 52720923 -165316235 + AluJo SINE Alu 1 304 -8 240 159 47 140 chr3 52720923 52721004 -165316154 - L1M4 LINE L1 -2197 3949 3879 561 233 27 34 chr3 52721966 52722112 -165315046 + MIR SINE MIR 96 240 -22 452 282 104 18 chr3 52722900 52723063 -165314095 - MIR SINE MIR -54 208 32 440 210 119 51 chr3 52723066 52723242 -165313916 + MER58B DNA MER1_type 3 190 -151 3211 112 54 82 chr3 52723242 52723851 -165313307 - LTR14B LTR ERVK 0 608 17 738 225 6 25 chr3 52723851 52724011 -165313147 + MER58B DNA MER1_type 185 341 0 2037 136 35 32 chr3 52724099 52724473 -165312685 + THE1C LTR MaLR 1 375 0 8108 122 11 37 chr3 52724473 52725729 -165311429 + THE1C-int LTR MaLR 1 1223 -357 272 269 0 0 chr3 52725781 52725833 -165311325 + L3 LINE CR1 622 673 -904 213 267 0 0 chr3 52726050 52726095 -165311063 + polypyrimidine Low_complexity Low_complexity 2 46 0 559 273 52 31 chr3 52726172 52726366 -165310792 + MLT1L LTR MaLR 418 615 0 456 394 108 12 chr3 52726385 52726811 -165310347 + L3 LINE CR1 696 1162 -415 1240 292 23 6 chr3 52726812 52727165 -165309993 - LTR16C LTR ERVL 0 491 133 273 258 0 0 chr3 52727331 52727393 -165309765 - LTR67 LTR ERVL -10 547 486 379 254 58 125 chr3 52727615 52727839 -165309319 + L1MC4 LINE L1 7830 8038 -4 5742 214 44 30 chr3 52728227 52730256 -165306902 - L1M4c LINE L1 -4178 2466 325 223 290 90 77 chr3 52732354 52732509 -165304649 - MIR3 SINE MIR -27 181 25 737 260 47 16 chr3 52733521 52733713 -165303445 + MIR SINE MIR 46 243 -19 1002 294 91 53 chr3 52735573 52736066 -165301092 - L1ME LINE L1 -302 5819 5308 852 305 74 102 chr3 52736112 52736906 -165300252 - L1ME LINE L1 -914 5232 4466 1869 149 3 3 chr3 52736906 52737202 -165299956 - AluJb SINE Alu -16 296 1 852 305 74 102 chr3 52737202 52737315 -165299843 - L1ME LINE L1 -1680 4466 4351 583 283 64 52 chr3 52737317 52738015 -165299143 - L1ME LINE L1 -1887 4259 3523 1904 193 45 8 chr3 52738538 52738980 -165298178 + MER89 LTR ERV1 2 559 0 447 19 0 0 chr3 52739166 52739218 -165297940 + (TG)n Simple_repeat Simple_repeat 2 53 0 678 210 70 19 chr3 52739521 52739678 -165297480 - MIR SINE MIR -49 213 49 973 243 11 16 chr3 52740332 52740615 -165296543 + MER46C DNA MER2_type 1 335 -3 277 224 86 105 chr3 52740634 52740786 -165296372 - MIR SINE MIR -48 214 66 220 216 176 0 chr3 52741002 52741053 -165296105 - MIR SINE MIR -104 158 99 212 279 0 0 chr3 52741103 52741146 -165296012 - MIR SINE MIR -57 151 109 927 166 12 18 chr3 52741832 52742001 -165295157 - MER5A DNA MER1_type -10 179 12 758 222 71 95 chr3 52742327 52742498 -165294660 - MLT1C LTR MaLR -8 459 285 2124 102 3 0 chr3 52742498 52742804 -165294354 - AluSp SINE Alu 0 307 1 758 222 71 95 chr3 52742804 52743113 -165294045 - MLT1C LTR MaLR -182 285 1 43837 33 21 1 chr3 52743198 52749224 -165287934 + L1PA2 LINE L1 6 6155 0 203 56 56 0 chr3 52749243 52749279 -165287879 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 688 164 45 0 chr3 52749286 52749396 -165287762 + FLAM_A SINE Alu 1 115 -18 1583 185 30 7 chr3 52749446 52749749 -165287409 - MER63B DNA MER1_type -96 340 31 884 264 37 12 chr3 52750193 52750435 -165286723 - MIR SINE MIR -12 250 3 275 284 25 0 chr3 52752461 52752542 -165284616 + LTR67 LTR ERVL 97 179 -378 180 291 38 76 chr3 52752800 52752879 -165284279 + MER5A DNA MER1_type 16 91 -98 707 200 38 6 chr3 52752905 52753065 -165284093 - L1MD2 LINE L1 -1 6358 6194 3193 185 36 22 chr3 52753084 52753728 -165283430 - L1MD2 LINE L1 -239 6120 5468 423 138 0 0 chr3 52753880 52753945 -165283213 - MER53 DNA DNA -124 65 1 258 256 128 0 chr3 52754007 52754093 -165283065 + L2 LINE L2 3168 3264 -49 486 194 9 19 chr3 52755253 52755361 -165281797 + L1ME2 LINE L1 6031 6137 -27 242 286 8 56 chr3 52755539 52755665 -165281493 + L1ME4a LINE L1 5816 5935 -186 1694 198 167 21 chr3 52755995 52756474 -165280684 - L1ME3 LINE L1 -88 6074 5526 773 251 134 7 chr3 52756594 52756893 -165280265 + LTR16B LTR ERVL 3 339 -125 234 93 23 23 chr3 52760013 52760056 -165277102 - L2 LINE L2 -21 3251 3209 298 256 81 94 chr3 52760107 52760538 -165276620 + MLT1I LTR MaLR 2 533 -16 529 221 44 38 chr3 52761215 52761373 -165275785 - LTR16C LTR ERVL 0 491 333 395 306 0 40 chr3 52761764 52761888 -165275270 - MER5A DNA MER1_type -5 184 66 4290 180 95 35 chr3 52761888 52762785 -165274373 - L1MDa LINE L1 -4072 2468 1487 2351 63 0 13 chr3 52762785 52763087 -165274071 + AluY SINE Alu 1 298 -13 4290 180 95 35 chr3 52763087 52763321 -165273837 - L1MDa LINE L1 -5053 1487 1269 412 212 12 0 chr3 52763323 52763408 -165273750 - L1MDa LINE L1 -5484 1056 971 1814 270 35 53 chr3 52763408 52763732 -165273426 - L1MDa LINE L1 -5792 748 419 2194 117 27 38 chr3 52763732 52764099 -165273059 + THE1B LTR MaLR 1 363 -1 1814 270 35 53 chr3 52764099 52764522 -165272636 - L1MDa LINE L1 -6121 419 15 217 186 17 68 chr3 52764533 52764592 -165272566 + MER5A DNA MER1_type 131 186 -3 183 301 65 32 chr3 52764998 52765091 -165272067 + MIR SINE MIR 20 115 -147 1532 226 44 34 chr3 52765285 52765696 -165271462 + MLT1C LTR MaLR 53 467 0 184 270 0 79 chr3 52765800 52765863 -165271295 - MIR SINE MIR -101 107 50 278 216 272 17 chr3 52766275 52766411 -165270747 + MIR SINE MIR 30 191 -61 295 190 25 63 chr3 52766417 52766496 -165270662 + MER116 DNA Mariner 5 80 0 332 294 39 0 chr3 52767240 52767342 -165269816 + MLT1L LTR MaLR 505 610 -5 4974 165 71 62 chr3 52769484 52770663 -165266495 + L1MC4a LINE L1 6619 7808 0 26 30 0 0 chr3 52770665 52770698 -165266460 + AT_rich Low_complexity Low_complexity 1 33 0 1668 175 3 13 chr3 52770713 52771021 -165266137 - AluJo SINE Alu -7 305 1 254 237 53 53 chr3 52771983 52772059 -165265099 + MIR SINE MIR 6 81 -181 908 199 34 69 chr3 52772081 52772343 -165264815 + LTR16C LTR ERVL 224 476 -15 186 231 154 77 chr3 52773213 52773330 -165263828 - L3 LINE CR1 -129 1448 1323 445 245 109 14 chr3 52774032 52774179 -165262979 - MIR SINE MIR -88 174 14 591 299 34 15 chr3 52774762 52774966 -165262192 - MIR SINE MIR -3 259 52 822 144 147 162 chr3 52775756 52776152 -165261006 - MLT1B LTR MaLR 0 390 1 320 138 75 38 chr3 52776156 52776236 -165260922 - Charlie8 DNA MER1_type -2251 166 84 301 317 117 8 chr3 52778345 52778465 -165258693 - MIR SINE MIR -109 153 21 533 191 32 8 chr3 52778470 52778596 -165258562 - L1MC4 LINE L1 0 8042 7914 439 227 0 0 chr3 52778599 52778674 -165258484 - MER2 DNA MER2_type 0 345 271 1292 111 5 5 chr3 52778704 52778893 -165258265 - MER2 DNA MER2_type -135 210 22 1271 218 154 15 chr3 52778908 52779303 -165257855 - L1MC4 LINE L1 -132 7910 7461 240 319 76 8 chr3 52779377 52779496 -165257662 + L3 LINE CR1 1144 1270 -307 376 280 23 53 chr3 52779688 52779820 -165257338 + L3 LINE CR1 1337 1464 -113 660 224 29 16 chr3 52779894 52780060 -165257098 + MER5A DNA MER1_type 14 170 -8 635 284 74 22 chr3 52780990 52781219 -165255939 - MIR SINE MIR -14 248 8 313 274 115 51 chr3 52781544 52781701 -165255457 - MIR3 SINE MIR 0 208 42 274 273 0 26 chr3 52782172 52782249 -165254909 + MIR SINE MIR 24 98 -164 632 304 68 0 chr3 52782673 52782893 -165254265 - MIR SINE MIR -3 259 25 522 313 56 20 chr3 52783452 52783647 -165253511 - MIR SINE MIR -8 254 53 213 181 0 72 chr3 52784254 52784337 -165252821 + C-rich Low_complexity Low_complexity 2 78 0 1497 238 41 5 chr3 52785562 52785978 -165251180 + L1MD2 LINE L1 2311 2741 -3405 3387 195 146 27 chr3 52785984 52786132 -165251026 + L1MD2 LINE L1 5320 5449 -910 2150 101 0 7 chr3 52786132 52786439 -165250719 + AluSg SINE Alu 1 305 -5 3387 195 146 27 chr3 52786439 52787207 -165249951 + L1MD2 LINE L1 5449 6345 -14 231 254 152 23 chr3 52787340 52787557 -165249601 + L1ME4a LINE L1 5860 6104 -17 235 242 109 94 chr3 52788044 52788172 -165248986 + L2 LINE L2 2216 2345 -969 948 260 62 5 chr3 52788198 52788458 -165248700 + MLT1G1 LTR MaLR 1 320 -275 1943 155 9 81 chr3 52788458 52788878 -165248280 - MLT1B LTR MaLR 0 390 1 948 260 62 5 chr3 52788878 52788952 -165248206 + MLT1G1 LTR MaLR 320 388 -207 593 143 11 0 chr3 52789079 52789170 -165247988 + MSTA LTR MaLR 337 428 0 448 295 35 35 chr3 52789172 52789345 -165247813 + MLT1G1 LTR MaLR 410 582 -8 1700 226 87 43 chr3 52789362 52789879 -165247279 - MLT1F LTR MaLR -2 540 1 686 278 86 0 chr3 52789884 52790082 -165247076 - MIR SINE MIR 0 262 48 447 102 0 0 chr3 52791446 52791505 -165245653 + AluS SINE Alu 39 97 -215 1293 123 38 9 chr3 52791522 52791733 -165245425 + AluSx SINE Alu 61 277 -35 261 0 0 0 chr3 52791734 52791763 -165245395 + (TC)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chr3 52791762 52791782 -165245376 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 297 0 0 0 chr3 52791781 52791814 -165245344 + (CA)n Simple_repeat Simple_repeat 2 34 0 401 267 189 44 chr3 52791857 52792217 -165244941 - MLT1J LTR MaLR 0 511 100 337 288 68 0 chr3 52792261 52792379 -165244779 + L1MC/D LINE L1 5545 5670 -2138 226 217 50 17 chr3 52792785 52792845 -165244313 - MIR3 SINE MIR -38 170 109 818 209 87 25 chr3 52796455 52796651 -165240507 - MER63A DNA MER1_type 0 210 3 557 286 80 6 chr3 52798053 52798257 -165238901 + MIR SINE MIR 5 224 -38 1450 96 5 0 chr3 52798295 52798494 -165238664 + L1PA7 LINE L1 5940 6139 -15 334 266 42 143 chr3 52799368 52799752 -165237406 + L2 LINE L2 2928 3272 0 373 311 134 8 chr3 52802571 52802690 -165234468 + MIR SINE MIR 20 153 -109 486 206 0 127 chr3 52802692 52802857 -165234301 + MER46C DNA MER2_type 2 145 -193 834 190 43 0 chr3 52803584 52803747 -165233411 - MER46A DNA MER2_type -66 170 1 361 127 0 0 chr3 52803747 52803810 -165233348 + L1MD2 LINE L1 6297 6359 0 333 0 0 0 chr3 52803833 52803870 -165233288 + (A)n Simple_repeat Simple_repeat 1 37 0 475 306 85 74 chr3 52803962 52804222 -165232936 + L2 LINE L2 2156 2424 -890 1539 181 86 12 chr3 52804222 52804559 -165232599 + MLT1A1 LTR MaLR 1 362 -3 475 306 85 74 chr3 52804559 52804733 -165232425 + L2 LINE L2 2424 2595 -719 257 303 10 40 chr3 52805572 52805671 -165231487 - L2 LINE L2 0 3272 3177 1096 293 104 51 chr3 52805842 52806371 -165230787 + MLT1K LTR MaLR 2 558 -30 444 239 28 0 chr3 52807462 52807571 -165229587 - LTR67 LTR ERVL -15 542 431 217 104 0 42 chr3 52808165 52808213 -165228945 + (GA)n Simple_repeat Simple_repeat 1 46 0 2395 61 0 7 chr3 52808239 52808536 -165228622 + AluY SINE Alu 1 295 -16 222 37 0 0 chr3 52809259 52809286 -165227872 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 2403 56 0 0 chr3 52809792 52810109 -165227049 - AluY SINE Alu 0 317 1 495 255 117 27 chr3 52810299 52810679 -165226479 - LTR16C LTR ERVL -56 435 4 438 293 180 46 chr3 52810689 52811215 -165225943 - L2 LINE L2 -2 3311 2722 1949 162 15 3 chr3 52811235 52811562 -165225596 - L1MB3 LINE L1 -1 6182 5852 243 297 0 50 chr3 52811652 52811753 -165225405 - L2 LINE L2 -1008 2306 2211 622 242 102 49 chr3 52811896 52812140 -165225018 + MIR SINE MIR 2 258 -4 201 241 0 19 chr3 52812142 52812196 -165224962 + MIR SINE MIR 102 154 -108 670 183 111 26 chr3 52812202 52812355 -165224803 - MLT1H LTR MaLR -2 547 382 908 223 19 9 chr3 52812856 52813067 -165224091 + L1ME4a LINE L1 5517 5729 -392 2154 102 3 59 chr3 52813272 52813594 -165223564 + AluSx SINE Alu 1 304 -8 797 275 84 42 chr3 52813978 52814736 -165222422 + L1MDa LINE L1 1019 1828 -4712 29 60 0 0 chr3 52814749 52814799 -165222359 + AT_rich Low_complexity Low_complexity 1 50 0 1221 157 5 15 chr3 52814801 52814999 -165222159 + AluJo SINE Alu 87 282 -30 180 0 0 0 chr3 52815002 52815022 -165222136 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 23 33 0 0 chr3 52815028 52815058 -165222100 + AT_rich Low_complexity Low_complexity 1 30 0 1453 250 113 30 chr3 52815062 52815787 -165221371 + L1MDa LINE L1 1889 2673 -4048 279 184 46 58 chr3 52815854 52815941 -165221217 + L1MDa LINE L1 2754 2839 -3701 702 256 123 32 chr3 52815978 52816318 -165220840 + L1ME4a LINE L1 5737 6107 -14 296 364 0 8 chr3 52817208 52817326 -165219832 - MIR3 SINE MIR -23 185 69 726 312 36 83 chr3 52817787 52818172 -165218986 - L2 LINE L2 -9 3263 2897 288 0 0 0 chr3 52818177 52818209 -165218949 + (A)n Simple_repeat Simple_repeat 1 32 0 1378 263 48 63 chr3 52818302 52818891 -165218267 - MLT1E LTR MaLR 0 593 14 1627 167 7 47 chr3 52819345 52819645 -165217513 + AluJb SINE Alu 2 289 -23 1137 156 208 45 chr3 52821246 52821515 -165215643 - MSTD LTR MaLR 0 396 84 979 100 8 0 chr3 52821530 52821660 -165215498 + AluSg SINE Alu 1 131 -179 1591 90 5 5 chr3 52821775 52821986 -165215172 + AluSc SINE Alu 87 297 -12 414 215 13 0 chr3 52821986 52822065 -165215093 - MSTD LTR MaLR -348 80 1 303 271 21 31 chr3 52822067 52822163 -165214995 - MIR3 SINE MIR -51 157 63 413 277 48 36 chr3 52822189 52822355 -165214803 - MIR SINE MIR -55 207 40 187 280 60 71 chr3 52822491 52822659 -165214499 - L2 LINE L2 -384 2930 2765 646 213 148 0 chr3 52822665 52822825 -165214333 - MER5A DNA MER1_type 0 189 4 587 216 0 0 chr3 52822840 52822956 -165214202 + MER3 DNA MER1_type 52 167 -42 1732 155 55 34 chr3 52822966 52823346 -165213812 + MER3 DNA MER1_type 2236 2623 0 1187 236 126 51 chr3 52824290 52824936 -165212222 + L1MC5 LINE L1 6563 7256 -727 207 0 0 0 chr3 52825052 52825075 -165212083 + (TG)n Simple_repeat Simple_repeat 1 23 0 * 378 0 0 0 chr3 52825074 52825116 -165212042 + (GA)n Simple_repeat Simple_repeat 1 42 0 206 128 26 0 chr3 52825926 52825965 -165211193 + (TA)n Simple_repeat Simple_repeat 1 40 0 822 136 0 8 chr3 52825989 52826114 -165211044 + AluJb SINE Alu 1 124 -188 4372 85 33 3 chr3 52826217 52826792 -165210366 + L1PA10 LINE L1 5573 6164 -4 3285 115 14 16 chr3 52826802 52827298 -165209860 + L1PB2 LINE L1 5657 6151 0 683 281 112 17 chr3 52828303 52828652 -165208506 + L1ME4a LINE L1 5477 5858 -263 1336 95 11 16 chr3 52828683 52828873 -165208285 - AluSg/x SINE Alu 0 310 122 11249 122 4 3 chr3 52829305 52830993 -165206165 - L1P LINE L1 -867 5279 3590 2320 141 2 4 chr3 52830992 52831379 -165205779 - L1P5 LINE L1 -476 5675 5298 * 1277 156 0 45 chr3 52831622 52831866 -165205292 - L1 LINE L1 -752 5394 5162 268 241 13 13 chr3 52832105 52832184 -165204974 - L1MC5 LINE L1 -48 7913 7835 363 207 193 42 chr3 52832214 52832451 -165204707 - L1MC5 LINE L1 -196 7765 7507 334 123 0 18 chr3 52832458 52832515 -165204643 + L1 LINE L1 5143 5198 -948 2386 104 0 0 chr3 52833494 52833802 -165203356 - AluSc SINE Alu -1 308 1 1313 159 59 0 chr3 52833925 52834245 -165202913 - L1M4 LINE L1 -658 6018 5680 2219 197 23 23 chr3 52834266 52834479 -165202679 - L1M4 LINE L1 -4833 1709 1497 1838 196 38 32 chr3 52834479 52834851 -165202307 - MLT1A2 LTR MaLR 0 374 1 2219 197 23 23 chr3 52834851 52835150 -165202008 - L1M4 LINE L1 -5044 1498 1197 979 177 71 15 chr3 52835150 52835381 -165201777 - AluSg/x SINE Alu 0 315 74 4407 211 55 42 chr3 52835382 52836365 -165200793 - L1M4 LINE L1 -5334 1208 239 1845 129 66 51 chr3 52836365 52836698 -165200460 + MER44D DNA MER2_type 2 609 0 4407 211 55 42 chr3 52836698 52836839 -165200319 - L1M4 LINE L1 -6303 239 66 1925 151 40 0 chr3 52836839 52837137 -165200021 - AluY SINE Alu -1 310 1 4407 211 55 42 chr3 52837137 52837203 -165199955 - L1M4 LINE L1 -6476 66 2 498 248 59 115 chr3 52837213 52837684 -165199474 + MER65A LTR ERV1 1 445 0 2025 120 6 35 chr3 52838072 52838389 -165198769 + AluSx SINE Alu 1 308 -4 1695 146 8 0 chr3 52838410 52838657 -165198501 + AluSx SINE Alu 51 299 -13 1707 192 33 0 chr3 52838669 52838976 -165198182 + L1MDa LINE L1 27 343 -6197 423 250 0 0 chr3 52838978 52839058 -165198100 + LTR33 LTR ERVL 131 210 -311 * 722 263 86 16 chr3 52839055 52839298 -165197860 + LTR16A LTR ERVL 187 446 -4 514 206 0 0 chr3 52839842 52839934 -165197224 + MER103 DNA DNA 2 93 -73 1428 277 41 24 chr3 52839936 52840529 -165196629 - L2 LINE L2 0 3313 2720 205 71 24 48 chr3 52840609 52840651 -165196507 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 932 286 60 67 chr3 52840659 52841838 -165195320 + L1ME2 LINE L1 4327 5492 -672 198 0 0 0 chr3 52841838 52841860 -165195298 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 932 286 60 67 chr3 52841860 52842314 -165194844 + L1ME2 LINE L1 5492 5948 -216 263 262 36 0 chr3 52843209 52843293 -165193865 + GA-rich Low_complexity Low_complexity 4 90 0 2405 309 36 6 chr3 52843293 52844102 -165193056 + ERVL LTR ERVL 4167 4999 -765 932 246 93 47 chr3 52844117 52844594 -165192564 + L1MDb LINE L1 20 615 -5794 489 309 4 72 chr3 52844697 52844860 -165192298 + LTR16C LTR ERVL 272 416 -75 2080 176 19 16 chr3 52844860 52845224 -165191934 + MLT1A1 LTR MaLR 1 365 0 489 309 4 72 chr3 52845224 52845296 -165191862 + LTR16C LTR ERVL 416 491 0 1603 227 76 41 chr3 52845756 52845866 -165191292 - MLT1G3 LTR MaLR 0 530 425 2339 125 21 26 chr3 52845866 52846243 -165190915 - THE1C LTR MaLR 0 375 1 1603 227 76 41 chr3 52846243 52846722 -165190436 - MLT1G3 LTR MaLR -105 425 1 185 326 0 0 chr3 52846722 52846768 -165190390 - L2 LINE L2 -17 3296 3251 189 0 0 0 chr3 52847174 52847195 -165189963 + (CAA)n Simple_repeat Simple_repeat 2 22 0 369 224 82 0 chr3 52847476 52847561 -165189597 + MIR SINE MIR 99 190 -72 516 323 85 14 chr3 52847877 52848100 -165189058 + LTR16C LTR ERVL 159 397 -94 317 227 72 21 chr3 52848582 52848679 -165188479 - MIR SINE MIR -57 151 50 950 266 169 28 chr3 52850401 52850762 -165186396 + LTR16A LTR ERVL 15 426 -24 233 313 42 6 chr3 52851177 52851343 -165185815 - L2 LINE L2 -214 3058 2887 435 174 0 61 chr3 52852064 52852162 -165184996 - MIR3 SINE MIR -8 200 109 915 214 135 35 chr3 52853060 52853349 -165183809 + MLT1J1 LTR MaLR 1 318 -128 281 253 42 21 chr3 52853412 52853507 -165183651 + MLT1J2 LTR MaLR 352 448 -2 317 275 33 0 chr3 52853641 52853732 -165183426 - MIR SINE MIR -97 165 72 459 304 94 28 chr3 52853862 52854224 -165182934 + LTR16C LTR ERVL 76 461 -30 330 201 129 36 chr3 52854234 52854373 -165182785 - MIR3 SINE MIR -36 172 21 478 276 163 4 chr3 52854511 52854757 -165182401 - L2 LINE L2 -3 3310 3026 21 0 0 0 chr3 52855815 52855836 -165181322 + AT_rich Low_complexity Low_complexity 1 21 0 1968 111 19 48 chr3 52856204 52856520 -165180638 - AluSg SINE Alu -3 307 1 24 0 0 0 chr3 52856549 52856573 -165180585 + AT_rich Low_complexity Low_complexity 1 24 0 587 190 17 9 chr3 52856673 52856789 -165180369 + MER103 DNA DNA 4 120 -46 2854 148 14 0 chr3 52857223 52857643 -165179515 - MSTB LTR MaLR 0 426 1 887 292 75 9 chr3 52857732 52858064 -165179094 + LTR16C LTR ERVL 38 391 -100 231 301 70 61 chr3 52859158 52859371 -165177787 - MIR SINE MIR -19 243 29 1034 233 0 14 chr3 52859607 52859830 -165177328 - MIR SINE MIR -8 254 35 307 237 90 45 chr3 52860730 52860886 -165176272 + L1MC/D LINE L1 5350 5512 -609 778 233 40 6 chr3 52861086 52861262 -165175896 + L1M4 LINE L1 14 195 -6347 1311 167 0 44 chr3 52861268 52861495 -165175663 - AluJo SINE Alu -13 299 83 4739 224 53 9 chr3 52861635 52863002 -165174156 + L1M4 LINE L1 529 1988 -4658 2188 103 129 48 chr3 52863038 52863181 -165173977 + MSTA LTR MaLR 1 131 -297 7865 23 0 2 chr3 52863181 52864167 -165172991 + L1PA4 LINE L1 5171 6154 -1 2188 103 129 48 chr3 52864167 52864419 -165172739 + MSTA LTR MaLR 131 428 0 420 186 88 0 chr3 52864658 52864760 -165172398 + MIR SINE MIR 24 134 -128 26 30 0 0 chr3 52865181 52865214 -165171944 + AT_rich Low_complexity Low_complexity 1 33 0 436 296 71 27 chr3 52866097 52866335 -165170823 - MIR SINE MIR -9 253 3 230 320 10 29 chr3 52866343 52866446 -165170712 + L1MC/D LINE L1 5574 5674 -2134 244 228 114 51 chr3 52866943 52867180 -165169978 + HAL1 LINE L1 826 1077 -1430 279 0 0 0 chr3 52867194 52867225 -165169933 + (A)n Simple_repeat Simple_repeat 1 31 0 279 0 0 0 chr3 52867914 52867945 -165169213 + (A)n Simple_repeat Simple_repeat 1 31 0 235 235 90 59 chr3 52867956 52868211 -165168947 + L1MC4a LINE L1 971 1233 -4886 684 291 86 64 chr3 52868267 52868571 -165168587 + L1MC4a LINE L1 5281 5577 -2214 1687 153 52 4 chr3 52868571 52868839 -165168319 + AluSx SINE Alu 5 285 -27 189 0 0 0 chr3 52868842 52868863 -165168295 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 684 291 86 64 chr3 52868863 52868913 -165168245 + L1MC4a LINE L1 5578 5625 -2166 2039 159 0 0 chr3 52868913 52869214 -165167944 + AluJb SINE Alu 1 301 -11 684 291 86 64 chr3 52869214 52869444 -165167714 + L1MC4a LINE L1 5625 5883 -1908 308 247 110 76 chr3 52869472 52869853 -165167305 - HAL1 LINE L1 -1187 1320 927 1310 127 158 0 chr3 52869964 52870185 -165166973 + LTR8A LTR ERV1 1 256 -471 1486 102 5 5 chr3 52870195 52870400 -165166758 - MER30 DNA MER1_type -25 205 1 2367 126 112 16 chr3 52870400 52870837 -165166321 + LTR8A LTR ERV1 249 727 0 583 307 122 15 chr3 52870844 52871254 -165165904 + L1MC4a LINE L1 5465 5918 -1890 23 54 0 0 chr3 52871421 52871458 -165165700 + AT_rich Low_complexity Low_complexity 1 37 0 1114 230 36 13 chr3 52872679 52872988 -165164170 + MER33 DNA MER1_type 6 321 -3 747 183 0 0 chr3 52873056 52873176 -165163982 + FLAM_A SINE Alu 1 120 -13 569 200 28 78 chr3 52874081 52874261 -165162897 + LTR33 LTR ERVL 43 213 -308 263 268 174 40 chr3 52874405 52874629 -165162529 + L1MC4a LINE L1 5895 6148 -1660 725 51 10 0 chr3 52874748 52874846 -165162312 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 1993 112 4 4 chr3 52874847 52875116 -165162042 - AluSg SINE Alu -41 269 1 256 278 90 30 chr3 52876599 52876732 -165160426 - MIR SINE MIR -93 169 29 664 204 48 18 chr3 52877471 52877638 -165159520 + MIR SINE MIR 59 230 -32 256 350 106 14 chr3 52877704 52877921 -165159237 - MIR SINE MIR -13 249 13 215 269 154 10 chr3 52878380 52878484 -165158674 - MIR SINE MIR -120 142 24 2156 122 0 13 chr3 52878636 52878947 -165158211 - AluSx SINE Alu -3 309 3 3373 145 35 7 chr3 52879844 52880423 -165156735 - L1MB3 LINE L1 -15 6168 5574 265 319 37 37 chr3 52880517 52880652 -165156506 + MER5A DNA MER1_type 18 152 -37 717 293 106 12 chr3 52881477 52881798 -165155360 - L1ME4a LINE L1 -251 5870 5520 734 211 170 0 chr3 52881824 52881995 -165155163 + MER20 DNA MER1_type 20 219 0 1386 264 117 11 chr3 52882468 52882930 -165154228 + MLT1J LTR MaLR 1 511 0 1073 200 24 0 chr3 52884515 52884720 -165152438 - MER63A DNA MER1_type 0 210 1 888 112 0 0 chr3 52885007 52885123 -165152035 + FLAM_C SINE Alu 1 116 -27 185 81 0 27 chr3 52885125 52885162 -165151996 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1639 177 40 4 chr3 52885411 52885688 -165151470 + AluJb SINE Alu 1 287 -25 21 0 0 0 chr3 52885693 52885714 -165151444 + AT_rich Low_complexity Low_complexity 1 21 0 3224 152 55 13 chr3 52885721 52886319 -165150839 + L1MB7 LINE L1 5562 6184 0 1110 197 94 0 chr3 52886643 52886877 -165150281 + L1M4 LINE L1 4021 4276 -1870 452 244 30 15 chr3 52887696 52887831 -165149327 - MER103 DNA DNA -1 165 29 227 186 0 0 chr3 52889178 52889221 -165147937 + CT-rich Low_complexity Low_complexity 4 46 0 314 289 20 54 chr3 52890118 52890267 -165146891 - MIR SINE MIR -55 207 64 240 86 0 0 chr3 52892368 52892403 -165144755 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 1313 272 78 24 chr3 52892885 52893308 -165143850 - MLT1J LTR MaLR -29 482 37 302 284 0 0 chr3 52893814 52893902 -165143256 + (TA)n Simple_repeat Simple_repeat 2 89 0 2046 166 45 19 chr3 52893902 52894346 -165142812 + MER89 LTR ERV1 4 558 -1 855 138 8 0 chr3 52894441 52894564 -165142594 + FLAM_A SINE Alu 1 124 -9 49 66 0 0 chr3 52895216 52895307 -165141851 + AT_rich Low_complexity Low_complexity 1 91 0 21 0 0 0 chr3 52896395 52896416 -165140742 + AT_rich Low_complexity Low_complexity 1 21 0 1178 179 18 9 chr3 52896433 52896656 -165140502 + L1MCc LINE L1 25 249 -6174 412 259 63 85 chr3 52896664 52896981 -165140177 - L1ME3A LINE L1 -18 6152 5843 2511 154 29 7 chr3 52898560 52898975 -165138183 + MSTB LTR MaLR 1 424 -2 929 210 189 12 chr3 52899228 52899561 -165137597 + LTR16A1 LTR ERVL 66 457 0 24 32 0 0 chr3 52899747 52899778 -165137380 + AT_rich Low_complexity Low_complexity 1 31 0 182 208 111 0 chr3 52900363 52900435 -165136723 - L2 LINE L2 -3 3269 3190 273 283 0 67 chr3 52901564 52901684 -165135474 + MIR SINE MIR 25 136 -72 518 270 132 48 chr3 52901780 52902069 -165135089 + MLT1K LTR MaLR 185 497 -91 7374 96 9 2 chr3 52902570 52903532 -165133626 - LTR5 LTR ERVK 0 969 1 527 253 124 0 chr3 52903759 52903945 -165133213 + MIR SINE MIR 34 242 -20 186 333 65 32 chr3 52904739 52904862 -165132296 + L2 LINE L2 2618 2744 -570 647 136 66 206 chr3 52904889 52905132 -165132026 + MER3 DNA MER1_type 1 209 0 249 266 25 13 chr3 52905244 52905323 -165131835 + L2 LINE L2 2890 2969 -303 607 293 67 83 chr3 52906547 52906919 -165130239 + L2 LINE L2 2906 3271 -1 514 169 8 32 chr3 52906937 52907061 -165130097 + GA-rich Low_complexity Low_complexity 2 122 0 1343 180 16 0 chr3 52907491 52907746 -165129412 + L1MD3 LINE L1 7737 7995 0 2326 113 0 0 chr3 52907750 52908060 -165129098 + AluSg SINE Alu 1 310 0 304 211 147 0 chr3 52908106 52908201 -165128957 + L1ME4a LINE L1 6009 6117 -4 24 0 0 0 chr3 52908202 52908226 -165128932 + AT_rich Low_complexity Low_complexity 1 24 0 335 175 308 0 chr3 52909641 52909761 -165127397 + MER5A DNA MER1_type 26 182 -7 459 272 38 38 chr3 52909781 52909939 -165127219 + MER5A DNA MER1_type 6 163 -26 470 298 82 43 chr3 52910313 52910618 -165126540 - L1MC4a LINE L1 -1913 5895 5579 243 263 119 62 chr3 52910776 52910936 -165126222 - MIR SINE MIR -46 216 48 391 311 0 8 chr3 52912120 52912239 -165124919 - L2 LINE L2 -1 3312 3195 208 248 50 99 chr3 52913476 52913597 -165123561 - L2 LINE L2 -2 3270 3156 21 0 0 0 chr3 52914137 52914158 -165123000 + AT_rich Low_complexity Low_complexity 1 21 0 283 213 53 0 chr3 52914531 52914606 -165122552 - L2 LINE L2 -1 3312 3234 1982 133 26 13 chr3 52914701 52915009 -165122149 + AluSx SINE Alu 1 312 0 420 245 13 13 chr3 52915405 52915560 -165121598 - L1MC5 LINE L1 -137 7824 7670 21 0 0 0 chr3 52915605 52915626 -165121532 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 52915659 52915682 -165121476 + AT_rich Low_complexity Low_complexity 1 23 0 1960 152 13 3 chr3 52915687 52915989 -165121169 - AluJb SINE Alu -7 305 1 1545 162 54 29 chr3 52915999 52916140 -165121018 - AluJb SINE Alu -24 288 152 1992 145 7 10 chr3 52916140 52916437 -165120721 - AluSx SINE Alu -14 298 3 1545 162 54 29 chr3 52916437 52916573 -165120585 - AluJb SINE Alu -160 152 4 457 70 84 0 chr3 52916573 52916644 -165120514 - L1PA16 LINE L1 -2 6164 6088 2242 107 3 0 chr3 52917168 52917459 -165119699 - AluSx SINE Alu -17 295 4 229 279 29 67 chr3 52917651 52917755 -165119403 + MIR SINE MIR 112 211 -51 247 281 10 62 chr3 52918169 52918265 -165118893 + LTR67 LTR ERVL 460 550 -7 226 250 29 29 chr3 52918625 52918693 -165118465 - MIR3 SINE MIR -30 178 111 363 260 48 0 chr3 52920535 52920639 -165116519 + MIR SINE MIR 78 186 -76 202 226 0 19 chr3 52920794 52920847 -165116311 - L2 LINE L2 0 3313 3262 452 287 109 9 chr3 52920957 52921187 -165115971 - MIR SINE MIR -2 260 8 1168 120 38 5 chr3 52921372 52921556 -165115602 - L1M2 LINE L1 -777 5535 5346 227 39 118 0 chr3 52921559 52921610 -165115548 + GA-rich Low_complexity Low_complexity 2 58 0 3670 151 25 15 chr3 52921615 52922283 -165114875 - L1M2 LINE L1 -1820 4326 3652 598 259 73 38 chr3 52922652 52922969 -165114189 + L1ME4a LINE L1 5599 5926 -195 1822 253 147 18 chr3 52924185 52925241 -165111917 + L2 LINE L2 2129 3313 0 2268 124 3 29 chr3 52925531 52925877 -165111281 + MER1B DNA MER1_type 1 337 0 206 281 0 18 chr3 52926722 52926779 -165110379 + GA-rich Low_complexity Low_complexity 4 59 0 251 265 69 10 chr3 52927522 52927624 -165109534 - MIR SINE MIR -108 154 47 2011 113 0 0 chr3 52927915 52928180 -165108978 - AluSq SINE Alu -48 265 1 370 199 127 72 chr3 52928202 52928383 -165108775 + LTR33 LTR ERVL 329 519 -2 2398 181 34 62 chr3 52931826 52932440 -165104718 + L1ME1 LINE L1 5565 6161 -5 1352 295 82 32 chr3 52932469 52933032 -165104126 + L1MEc LINE L1 50 640 -5756 609 234 50 50 chr3 52933348 52933582 -165103576 + LTR45 LTR ERV1 366 525 0 1455 234 35 10 chr3 52933582 52933984 -165103174 + L1MEc LINE L1 657 1068 -5328 382 326 61 0 chr3 52934184 52934316 -165102842 + L2 LINE L2 3133 3272 0 394 354 0 0 chr3 52934503 52934630 -165102528 + MIR3 SINE MIR 75 201 -7 1677 230 89 59 chr3 52934633 52935091 -165102067 + MLT1F LTR MaLR 1 479 -63 2224 126 7 0 chr3 52935091 52935401 -165101757 - AluSx SINE Alu 0 312 1 1677 230 89 59 chr3 52935401 52935468 -165101690 + MLT1F LTR MaLR 479 542 0 2159 138 3 3 chr3 52936929 52937240 -165099918 + AluSx SINE Alu 1 311 -1 227 239 0 0 chr3 52937282 52937328 -165099830 + (TGGG)n Simple_repeat Simple_repeat 1 46 0 4603 187 86 13 chr3 52938090 52938380 -165098778 - MER45B DNA AcHobo -541 1040 773 2391 84 7 3 chr3 52938380 52938678 -165098480 - AluSc SINE Alu -10 299 1 4603 187 86 13 chr3 52938678 52939322 -165097836 - MER45B DNA AcHobo -808 773 38 855 277 19 4 chr3 52939355 52939611 -165097547 - MIR SINE MIR -1 261 2 1629 111 80 76 chr3 52939819 52940107 -165097051 + AluJb SINE Alu 1 289 -23 727 167 0 0 chr3 52942651 52942777 -165094381 + L1MA5 LINE L1 6175 6300 0 1989 120 3 27 chr3 52943331 52943623 -165093535 + AluSq SINE Alu 1 285 -28 309 51 0 0 chr3 52943623 52943662 -165093496 + (CA)n Simple_repeat Simple_repeat 2 40 0 373 259 43 14 chr3 52943688 52943827 -165093331 - LTR16C LTR ERVL -10 481 339 259 286 0 14 chr3 52944184 52944254 -165092904 - L2 LINE L2 0 3272 3204 831 204 5 21 chr3 52945008 52945199 -165091959 - MER53 DNA DNA -1 188 1 537 270 95 40 chr3 52945976 52946250 -165090908 - L2 LINE L2 -8 3305 3017 713 186 174 0 chr3 52946943 52947104 -165090054 + MER5A DNA MER1_type 1 189 0 591 298 90 18 chr3 52948257 52948536 -165088622 + L1ME4a LINE L1 5387 5685 -436 418 263 40 11 chr3 52948612 52948787 -165088371 + L1ME4a LINE L1 5689 5868 -253 573 267 135 51 chr3 52949455 52949788 -165087370 - MLT1H LTR MaLR -188 361 1 2169 154 62 5 chr3 52950933 52951336 -165085822 + L1MC3 LINE L1 7360 7785 0 735 286 32 9 chr3 52951347 52951567 -165085591 + MIR SINE MIR 16 240 -22 219 211 0 35 chr3 52952468 52952525 -165084633 - MIR SINE MIR -89 173 119 368 236 169 22 chr3 52954674 52954852 -165082306 - L1MC4a LINE L1 -1634 6174 5971 346 303 142 19 chr3 52955357 52955618 -165081540 - L2 LINE L2 -9 3263 2971 272 231 176 19 chr3 52956020 52956128 -165081030 - LTR33 LTR ERVL -3 518 394 345 228 239 11 chr3 52956227 52956411 -165080747 - LTR33 LTR ERVL -272 249 24 203 229 0 33 chr3 52956486 52956547 -165080611 + T-rich Low_complexity Low_complexity 1 59 0 214 322 58 11 chr3 52957507 52957594 -165079564 - L2 LINE L2 0 3313 3223 246 279 13 13 chr3 52957616 52957695 -165079463 + L1ME3A LINE L1 5721 5799 -2009 * 1218 231 82 84 chr3 52957694 52958418 -165078740 + L1MC5 LINE L1 6530 7255 -733 712 257 17 17 chr3 52958519 52958756 -165078402 + L1MC5 LINE L1 7261 7497 -464 1130 107 96 15 chr3 52958769 52958966 -165078192 - L1MA9 LINE L1 -31 6281 6069 1686 136 38 25 chr3 52959012 52959326 -165077832 - MER93b LTR ERV1 0 373 2 4185 138 22 20 chr3 52959336 52959949 -165077209 - L1MA9 LINE L1 -330 5982 5363 2641 20 7 3 chr3 52959949 52960246 -165076912 - AluY SINE Alu -13 298 1 4185 138 22 20 chr3 52960246 52960393 -165076765 - L1MA9 LINE L1 -949 5363 5218 725 211 43 11 chr3 52961238 52961423 -165075735 + L1ME3A LINE L1 5875 6065 -105 338 255 42 104 chr3 52961423 52961635 -165075523 + MLT1J LTR MaLR 5 203 -308 225 229 86 57 chr3 52961771 52961841 -165075317 - L2 LINE L2 -1 3271 3200 2419 106 77 20 chr3 52961856 52962261 -165074897 - MSTA LTR MaLR 0 428 1 372 206 103 0 chr3 52962348 52962445 -165074713 - Charlie8 DNA MER1_type -2194 223 117 1966 190 79 11 chr3 52962517 52962974 -165074184 - MLT1E2 LTR MaLR -2 624 137 10061 145 82 50 chr3 52962993 52964525 -165072633 + Tigger1 DNA MER2_type 1 1483 -935 1685 164 7 11 chr3 52964525 52964805 -165072353 + AluJb SINE Alu 1 279 -33 297 0 0 0 chr3 52964807 52964840 -165072318 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 10061 145 82 50 chr3 52964840 52965646 -165071512 + Tigger1 DNA MER2_type 1483 2416 -2 488 124 142 35 chr3 52965656 52965769 -165071389 - MLT1E2 LTR MaLR -529 125 1 746 172 8 0 chr3 52965817 52965939 -165071219 - AluJb SINE Alu -188 124 2 276 300 167 13 chr3 52966437 52966587 -165070571 + L1MB7 LINE L1 716 888 -5654 526 226 7 7 chr3 52966725 52966862 -165070296 + L1MB7 LINE L1 1005 1141 -5405 2081 114 30 3 chr3 52966862 52967159 -165069999 + AluSq SINE Alu 1 305 -8 3308 207 45 26 chr3 52967169 52968668 -165068490 + L1MB7 LINE L1 5011 6540 -142 1659 166 3 10 chr3 52968668 52968957 -165068201 - AluJo SINE Alu -21 291 5 3308 207 45 26 chr3 52968957 52969094 -165068064 + L1MB7 LINE L1 6540 6673 -9 296 254 42 34 chr3 52969106 52969224 -165067934 - Charlie8 DNA MER1_type -2296 121 3 395 309 83 78 chr3 52969225 52969636 -165067522 - L2 LINE L2 -51 3221 2809 469 252 53 76 chr3 52969779 52969855 -165067303 - MIR SINE MIR -10 252 176 891 166 101 0 chr3 52969855 52970024 -165067134 - MER5A DNA MER1_type -3 186 1 469 252 53 76 chr3 52970024 52970181 -165066977 - MIR SINE MIR -86 176 30 378 0 0 0 chr3 52970257 52970299 -165066859 + (CA)n Simple_repeat Simple_repeat 1 42 0 23 54 0 0 chr3 52970554 52970591 -165066567 + AT_rich Low_complexity Low_complexity 1 37 0 252 184 0 0 chr3 52972462 52972511 -165064647 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 25 83 0 0 chr3 52972798 52972858 -165064300 + GC_rich Low_complexity Low_complexity 1 60 0 442 313 154 53 chr3 52972859 52973577 -165063581 - L1M2 LINE L1 -5654 1195 529 198 260 115 0 chr3 52974437 52974509 -165062649 - MIR SINE MIR -58 150 72 240 340 64 35 chr3 52976463 52976604 -165060554 + L2 LINE L2 3119 3263 -9 237 310 84 53 chr3 52976820 52977104 -165060054 + L2 LINE L2 2453 2745 -569 271 326 68 68 chr3 52977140 52977465 -165059693 - L2 LINE L2 0 3313 2989 221 316 102 0 chr3 52977946 52978044 -165059114 - MIR SINE MIR -59 203 96 197 219 19 89 chr3 52978245 52978332 -165058826 + MIR SINE MIR 63 147 -63 623 87 11 0 chr3 52979219 52979311 -165057847 - L1PA8 LINE L1 -4 6168 6076 787 196 11 22 chr3 52979453 52979632 -165057526 - AluJb SINE Alu 0 312 136 1963 153 0 17 chr3 52979992 52980293 -165056865 + AluSx SINE Alu 1 296 -16 498 254 145 29 chr3 52980320 52980599 -165056559 - L1ME4a LINE L1 -214 5907 5577 1496 146 89 54 chr3 52980599 52980948 -165056210 - MER46B DNA MER2_type 0 236 1 498 254 145 29 chr3 52980948 52981019 -165056139 - L1ME4a LINE L1 -544 5577 5516 2216 112 3 0 chr3 52982103 52982398 -165054760 - AluSx SINE Alu -16 296 1 267 31 0 0 chr3 52982776 52982808 -165054350 + (TA)n Simple_repeat Simple_repeat 2 33 0 235 125 50 62 chr3 52983653 52983733 -165053425 + L1ME4a LINE L1 6027 6105 -16 822 283 37 8 chr3 52984409 52984653 -165052505 - MIR SINE MIR -5 257 7 2258 91 0 0 chr3 52985551 52985836 -165051322 - AluSg SINE Alu -25 285 1 681 254 143 5 chr3 52987255 52987479 -165049679 + MIR SINE MIR 1 255 -7 863 147 0 0 chr3 52987844 52987973 -165049185 + FLAM_C SINE Alu 1 129 -14 21 0 0 0 chr3 52987979 52988000 -165049158 + AT_rich Low_complexity Low_complexity 1 21 0 246 292 0 15 chr3 52988639 52988704 -165048454 - L2 LINE L2 -19 3294 3231 215 219 109 0 chr3 52990581 52990645 -165046513 + MIR SINE MIR 71 141 -121 273 271 84 9 chr3 52990655 52990762 -165046396 - MIR SINE MIR -37 225 111 323 316 170 2 chr3 52991452 52991690 -165045468 + L1ME3A LINE L1 5433 5714 -456 312 223 7 101 chr3 52991759 52991841 -165045317 + L1ME3A LINE L1 5843 5908 -262 2351 72 0 10 chr3 52991841 52992145 -165045013 - AluY SINE Alu -10 301 1 312 223 7 101 chr3 52992145 52992201 -165044957 + L1ME3A LINE L1 5908 5968 -202 389 297 115 77 chr3 52992797 52993666 -165043492 - L1MDa LINE L1 -2898 3642 2741 13015 103 28 46 chr3 52993695 52994046 -165043112 + Tigger1 DNA MER2_type 2 358 -2060 228 35 0 0 chr3 52994046 52994075 -165043083 + (TC)n Simple_repeat Simple_repeat 2 30 0 13015 103 28 46 chr3 52994075 52995957 -165041201 + Tigger1 DNA MER2_type 358 2194 -224 1435 173 4 0 chr3 52995973 52996198 -165040960 - AluJo SINE Alu -8 304 79 280 98 0 0 chr3 52996238 52996279 -165040879 - MER4E LTR ERV1 -72 707 667 1328 95 5 10 chr3 52996283 52996483 -165040675 + Tigger1 DNA MER2_type 2220 2418 0 318 276 67 0 chr3 52996515 52996620 -165040538 - L1MDa LINE L1 -3961 2579 2468 366 220 102 86 chr3 52996959 52997145 -165040013 - HAL1 LINE L1 -847 1660 1472 1620 234 155 5 chr3 52998819 52999490 -165037668 + L1MD2 LINE L1 3956 4727 -1419 3178 181 81 14 chr3 52999490 53000229 -165036929 + L1MD2 LINE L1 5559 6347 -12 31 0 0 0 chr3 53000424 53000455 -165036703 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr3 53000748 53000769 -165036389 + AT_rich Low_complexity Low_complexity 1 21 0 728 172 30 37 chr3 53001124 53001258 -165035900 + FLAM_A SINE Alu 1 133 0 1813 191 0 19 chr3 53001311 53001626 -165035532 + 7SLRNA srpRNA srpRNA 1 309 -11 450 258 77 45 chr3 53002663 53002818 -165034340 - MER5B DNA MER1_type -2 176 17 740 290 43 4 chr3 53003827 53004143 -165033015 + L2 LINE L2 2695 3021 -292 531 220 38 8 chr3 53004202 53004334 -165032824 + MIR SINE MIR 110 245 -17 26 30 0 0 chr3 53004890 53004923 -165032235 + AT_rich Low_complexity Low_complexity 1 33 0 2215 102 3 10 chr3 53005104 53005408 -165031750 + AluSx SINE Alu 1 302 -10 35 24 0 0 chr3 53005623 53005665 -165031493 + AT_rich Low_complexity Low_complexity 1 42 0 218 294 134 34 chr3 53005966 53006085 -165031073 + L2 LINE L2 3139 3269 -3 995 251 99 49 chr3 53006576 53007564 -165029594 + L1M4 LINE L1 2133 3170 -2976 1047 188 100 78 chr3 53007686 53008047 -165029111 + L1ME1 LINE L1 5789 6157 -9 2263 114 0 3 chr3 53008192 53008498 -165028660 + AluSg SINE Alu 1 305 -5 2408 84 0 0 chr3 53009121 53009429 -165027729 - AluY SINE Alu -3 308 1 289 291 114 15 chr3 53010694 53010965 -165026193 + HAL1 LINE L1 811 1108 -1399 789 271 46 42 chr3 53011002 53011099 -165026059 - MIR SINE MIR 0 262 167 1931 147 3 0 chr3 53011099 53011384 -165025774 + AluJb SINE Alu 3 288 -24 789 271 46 42 chr3 53011384 53011526 -165025632 - MIR SINE MIR -95 167 22 191 260 208 0 chr3 53011564 53011660 -165025498 + L2 LINE L2 3157 3272 0 2079 182 105 67 chr3 53013174 53013801 -165023357 - L1M4 LINE L1 -922 5460 4810 604 231 31 0 chr3 53013802 53013932 -165023226 - MER58B DNA MER1_type 0 341 208 1035 244 82 7 chr3 53013936 53014033 -165023125 - L1M4 LINE L1 -1877 4505 4417 180 97 0 0 chr3 53014033 53014064 -165023094 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1035 244 82 7 chr3 53014064 53014236 -165022922 - L1M4 LINE L1 -1965 4417 4216 258 212 17 2 chr3 53014241 53014321 -165022837 - L1M4 LINE L1 -5032 1248 1164 2493 55 3 0 chr3 53014323 53014613 -165022545 - AluY SINE Alu -20 291 1 786 186 16 80 chr3 53014626 53014814 -165022344 - FRAM SINE Alu -7 169 1 550 126 0 21 chr3 53014814 53014909 -165022249 - L1MEc LINE L1 -5258 1138 1046 1629 93 9 0 chr3 53014910 53015125 -165022033 - AluSp SINE Alu -17 296 80 1566 203 73 21 chr3 53015225 53015717 -165021441 - L1ME LINE L1 -672 5494 4774 2481 68 0 0 chr3 53015717 53016013 -165021145 - AluY SINE Alu -15 296 1 1566 203 73 21 chr3 53016013 53016059 -165021099 - L1ME LINE L1 -1392 4774 4732 264 225 113 25 chr3 53016643 53016723 -165020435 - L2 LINE L2 -8 3305 3219 22 35 0 0 chr3 53017724 53017753 -165019405 + AT_rich Low_complexity Low_complexity 1 29 0 486 0 0 0 chr3 53018553 53018607 -165018551 + (TA)n Simple_repeat Simple_repeat 2 55 0 2132 117 0 0 chr3 53018607 53018890 -165018268 - AluSc SINE Alu -26 283 1 699 289 151 35 chr3 53019173 53020153 -165017005 + L1MEd LINE L1 463 1604 -4706 1249 157 96 42 chr3 53020376 53020489 -165016669 + AluJo SINE Alu 1 106 -206 1708 134 116 26 chr3 53020489 53020833 -165016325 + THE1C LTR MaLR 1 375 0 1249 157 96 42 chr3 53020833 53020980 -165016178 + AluJo SINE Alu 106 275 -37 1954 144 3 3 chr3 53021054 53021353 -165015805 + AluSx SINE Alu 3 301 -11 2317 85 0 16 chr3 53021374 53021690 -165015468 + AluY SINE Alu 1 311 0 1871 159 0 14 chr3 53021794 53022090 -165015068 + AluJo SINE Alu 1 292 -20 370 160 16 40 chr3 53022092 53022217 -165014941 + GA-rich Low_complexity Low_complexity 3 124 0 243 250 0 0 chr3 53022218 53022266 -165014892 + polypurine Low_complexity Low_complexity 2 49 0 1671 180 20 0 chr3 53022602 53022902 -165014256 + AluJb SINE Alu 3 308 -4 963 183 0 17 chr3 53023578 53023753 -165013405 - FRAM SINE Alu -5 171 1 309 110 41 0 chr3 53025335 53025408 -165011750 + (TA)n Simple_repeat Simple_repeat 2 77 0 2057 120 0 3 chr3 53026103 53026394 -165010764 + AluSx SINE Alu 1 290 -22 1593 147 128 22 chr3 53026622 53026941 -165010217 + MSTA LTR MaLR 1 353 -75 417 70 0 0 chr3 53027231 53027288 -165009870 + (CA)n Simple_repeat Simple_repeat 2 58 0 379 183 29 29 chr3 53027499 53027636 -165009522 + CT-rich Low_complexity Low_complexity 3 139 0 11444 166 22 44 chr3 53027998 53030445 -165006713 - L1PB1 LINE L1 0 6151 3652 2444 82 0 3 chr3 53030445 53030748 -165006410 - AluY SINE Alu -9 302 1 11444 166 22 44 chr3 53030748 53031382 -165005776 - L1PB1 LINE L1 -2499 3652 3166 2772 10 0 0 chr3 53031382 53031682 -165005476 - AluY SINE Alu -11 300 1 11444 166 22 44 chr3 53031682 53032140 -165005018 - L1PB1 LINE L1 -2985 3166 2700 451 250 45 45 chr3 53032453 53032482 -165004676 - MIR SINE MIR -90 172 144 2225 117 0 7 chr3 53032482 53032791 -165004367 - AluSx SINE Alu -5 307 1 451 250 45 45 chr3 53032791 53032917 -165004241 - MIR SINE MIR -117 145 17 2363 102 0 13 chr3 53033041 53033356 -165003802 - AluSx SINE Alu -1 311 1 4485 105 11 26 chr3 53034560 53035181 -165001977 + LTR9 LTR ERV1 1 612 0 23 33 0 0 chr3 53035298 53035328 -165001830 + AT_rich Low_complexity Low_complexity 1 30 0 2048 134 7 0 chr3 53035511 53035818 -165001340 + AluSg SINE Alu 1 309 -1 236 320 16 48 chr3 53035886 53036011 -165001147 + MIR SINE MIR 14 134 -128 476 167 123 9 chr3 53036024 53036138 -165001020 - L1MC5 LINE L1 -61 7900 7774 2347 193 62 40 chr3 53036140 53036339 -165000819 - MLT1F LTR MaLR 0 542 349 1121 201 37 0 chr3 53036339 53036553 -165000605 + MER58A DNA MER1_type 2 223 -1 2347 193 62 40 chr3 53036553 53036883 -165000275 - MLT1F LTR MaLR -193 349 1 565 143 223 0 chr3 53037026 53037138 -165000020 - MER7A DNA MER2_type -211 135 1 216 0 0 0 chr3 53039728 53039752 -164997406 + (CAAAA)n Simple_repeat Simple_repeat 4 27 0 207 316 95 11 chr3 53040299 53040394 -164996764 + L2 LINE L2 2993 3095 -177 257 244 87 55 chr3 53040650 53040777 -164996381 - MER5A DNA MER1_type 0 189 59 772 217 94 5 chr3 53040778 53040990 -164996168 - L1MC4 LINE L1 0 8042 7812 1268 233 137 47 chr3 53041282 53041772 -164995386 + MLT1F LTR MaLR 1 534 -8 21 36 0 0 chr3 53041983 53042011 -164995147 + AT_rich Low_complexity Low_complexity 1 28 0 483 279 121 31 chr3 53042187 53042477 -164994681 - L1MC4a LINE L1 -1870 5938 5623 464 274 80 62 chr3 53042491 53042765 -164994393 + L2 LINE L2 1669 1947 -1367 542 182 30 0 chr3 53042765 53042864 -164994294 + MER3 DNA MER1_type 105 206 -3 405 325 227 13 chr3 53042868 53043471 -164993687 + L2 LINE L2 2164 2895 -419 1017 214 6 0 chr3 53045771 53045944 -164991214 - FAM SINE Alu -1 174 1 213 325 84 0 chr3 53046236 53046319 -164990839 + L2 LINE L2 3145 3234 -38 276 269 67 59 chr3 53046351 53046470 -164990688 - MIR SINE MIR -18 244 125 1977 85 0 0 chr3 53046614 53046860 -164990298 + AluY SINE Alu 49 294 -17 26 64 0 0 chr3 53047306 53047353 -164989805 + AT_rich Low_complexity Low_complexity 1 47 0 195 265 20 0 chr3 53048197 53048246 -164988912 + MIR3 SINE MIR 134 183 -25 542 296 148 12 chr3 53048803 53049046 -164988112 - L3 LINE CR1 -13 1564 1289 243 327 119 0 chr3 53049339 53049440 -164987718 - L2 LINE L2 0 3272 3160 2047 63 47 0 chr3 53050543 53050798 -164986360 + AluY SINE Alu 44 310 -1 425 241 0 18 chr3 53050864 53050976 -164986182 + MIR SINE MIR 153 262 0 201 242 65 0 chr3 53051739 53051801 -164985357 + MIR SINE MIR 77 142 -66 1737 162 16 20 chr3 53051830 53052133 -164985025 + AluJb SINE Alu 5 306 -6 661 198 9 0 chr3 53054514 53054630 -164982528 + MER119 DNA MER1_type 1 117 -466 1628 214 20 96 chr3 53055233 53055931 -164981227 + MLT1E LTR MaLR 33 593 0 1723 179 24 7 chr3 53055933 53056229 -164980929 + AluJo SINE Alu 1 301 -11 203 152 0 0 chr3 53056234 53056267 -164980891 + A-rich Low_complexity Low_complexity 3 35 0 1944 144 41 0 chr3 53056815 53057107 -164980051 - AluJb SINE Alu -8 304 1 2298 107 0 0 chr3 53058239 53058537 -164978621 - AluSx SINE Alu -14 298 1 320 359 39 0 chr3 53058542 53058670 -164978488 - MIR3 SINE MIR -30 178 46 229 323 113 5 chr3 53059032 53059227 -164977931 - L2 LINE L2 -221 3051 2836 1977 125 17 7 chr3 53060081 53060369 -164976789 + AluSq SINE Alu 1 291 -22 269 256 26 13 chr3 53060757 53060835 -164976323 - MER117 DNA MER1_type -80 117 39 515 212 9 35 chr3 53061178 53061291 -164975867 - MER5B DNA MER1_type -68 110 1 191 254 68 59 chr3 53062821 53062939 -164974219 + MER5A DNA MER1_type 39 157 -32 679 223 194 0 chr3 53064030 53064236 -164972922 - MIR SINE MIR -1 261 16 2228 101 0 0 chr3 53064566 53064872 -164972286 + AluSx SINE Alu 1 306 -6 2060 106 0 7 chr3 53064895 53065188 -164971970 + AluSq SINE Alu 5 295 -18 1728 132 14 27 chr3 53066818 53067113 -164970045 - AluJb SINE Alu -21 291 1 1142 174 15 0 chr3 53069108 53069304 -164967854 + L1PBa LINE L1 2 200 -6663 1097 112 92 36 chr3 53069304 53069500 -164967658 + L1PBa LINE L1 634 840 -6023 * 8188 86 56 18 chr3 53069498 53070580 -164966578 + L1PBa LINE L1 1702 2875 -3987 2337 128 33 8 chr3 53070580 53070946 -164966212 - THE1C LTR MaLR 0 375 1 8188 86 56 18 chr3 53070946 53071484 -164965674 + L1PBa LINE L1 2875 3391 -3471 275 250 0 0 chr3 53071584 53071636 -164965522 + AluSc SINE Alu 228 279 -20 504 0 0 0 chr3 53071640 53071696 -164965462 + (TA)n Simple_repeat Simple_repeat 2 57 0 825 215 37 0 chr3 53072722 53072885 -164964273 + MER58A DNA MER1_type 31 199 -25 2434 68 0 3 chr3 53072961 53073272 -164963886 - AluY SINE Alu -1 310 1 184 277 128 32 chr3 53074512 53074606 -164962552 + L2 LINE L2 3170 3272 0 724 230 13 7 chr3 53075779 53075931 -164961227 + MIR SINE MIR 72 224 -38 600 145 154 17 chr3 53076812 53076929 -164960229 + AluJ SINE Alu 1 133 -169 21 0 0 0 chr3 53078036 53078057 -164959101 + AT_rich Low_complexity Low_complexity 1 21 0 837 209 0 35 chr3 53078398 53078570 -164958588 + AluJ SINE Alu 121 286 -26 483 281 342 7 chr3 53083016 53083311 -164953847 + L2 LINE L2 1118 1511 -1803 330 264 24 88 chr3 53083336 53083461 -164953697 - L1MB8 LINE L1 -91 6087 5971 1323 258 222 24 chr3 53083461 53084131 -164953027 + L2 LINE L2 1920 2722 -592 2568 224 73 5 chr3 53084140 53085143 -164952015 - L1MEc LINE L1 -3277 2938 1900 711 216 111 0 chr3 53085192 53085382 -164951776 - L1MEc LINE L1 -4585 1811 1601 2194 241 120 14 chr3 53085393 53086099 -164951059 - L1MEc LINE L1 -5581 815 35 587 211 113 38 chr3 53086108 53086293 -164950865 + L2 LINE L2 2721 2919 -395 395 264 28 38 chr3 53086992 53087098 -164950060 + MER45A DNA AcHobo 1 105 -73 7337 167 129 25 chr3 53087102 53088223 -164948935 + L1PA13 LINE L1 3414 4754 -2108 2000 114 0 14 chr3 53088223 53088512 -164948646 + AluSg SINE Alu 1 285 -25 7337 167 129 25 chr3 53088512 53089001 -164948157 + L1PA13 LINE L1 4754 5191 -1671 551 73 0 0 chr3 53089001 53089097 -164948061 + AluSg/x SINE Alu 212 307 0 5822 97 36 6 chr3 53089098 53090762 -164946396 + L1PA13 LINE L1 5185 6879 0 1940 129 20 0 chr3 53090767 53091062 -164946096 - AluSx SINE Alu -11 301 1 332 141 16 47 chr3 53091067 53091131 -164946027 + MER45A DNA AcHobo 98 159 -19 2199 99 0 0 chr3 53091661 53091953 -164945205 + AluSx SINE Alu 1 292 -20 2260 74 10 3 chr3 53091953 53092251 -164944907 + AluY SINE Alu 1 300 -11 364 311 0 47 chr3 53092560 53092708 -164944450 + MER46C DNA MER2_type 176 316 -22 415 229 80 46 chr3 53094260 53094435 -164942723 - MER5A DNA MER1_type -2 187 7 25 0 0 0 chr3 53096263 53096288 -164940870 + GC_rich Low_complexity Low_complexity 1 25 0 287 263 137 9 chr3 53099106 53099254 -164937904 + MIR SINE MIR 20 185 -61 976 146 30 12 chr3 53100509 53100674 -164936484 - FRAM SINE Alu -14 162 1 3218 204 96 24 chr3 53151056 53152109 -164885049 + L1MEc LINE L1 2187 3314 -2901 1937 188 148 13 chr3 53152109 53152567 -164884591 + MLT2B1 LTR ERVL 1 520 0 3218 204 96 24 chr3 53152567 53152666 -164884492 + L1MEc LINE L1 3314 3404 -2811 231 274 51 43 chr3 53153035 53153152 -164884006 - L2 LINE L2 -23 3290 3173 269 326 150 52 chr3 53153302 53153823 -164883335 - L2 LINE L2 -340 2974 2403 268 125 0 0 chr3 53154277 53154317 -164882841 - MER5C DNA MER1_type 0 324 285 795 190 185 85 chr3 53154348 53154700 -164882458 + MLT1B LTR MaLR 4 390 0 485 267 35 0 chr3 53154828 53154944 -164882214 - MER5C DNA MER1_type -202 122 3 6084 131 28 28 chr3 53155090 53156157 -164881001 + MER11C LTR ERVK 1 1067 -4 711 71 0 62 chr3 53157106 53157218 -164879940 + HY1 scRNA scRNA 5 109 -3 576 229 46 122 chr3 53157238 53157696 -164879462 + L1MC4 LINE L1 7617 8039 -3 561 170 0 0 chr3 53158298 53158392 -164878766 - MER20 DNA MER1_type 0 219 126 310 238 74 41 chr3 53159575 53159697 -164877461 - L1ME4a LINE L1 -22 6099 5974 234 314 83 18 chr3 53159702 53159931 -164877227 - L1ME4a LINE L1 -1882 5926 5683 411 335 42 78 chr3 53159931 53160218 -164876940 - L1ME4a LINE L1 -1016 5130 4859 2030 147 0 10 chr3 53160218 53160531 -164876627 - AluSx SINE Alu -2 310 1 411 335 42 78 chr3 53160531 53160643 -164876515 - L1ME4a LINE L1 -1287 4859 4745 347 295 9 29 chr3 53161982 53162087 -164875071 - L2 LINE L2 -2 3270 3168 951 183 0 0 chr3 53162632 53162801 -164874357 - MIR SINE MIR -21 241 73 451 287 154 5 chr3 53162948 53163136 -164874022 - MIR SINE MIR -27 235 20 27 49 0 0 chr3 53163991 53164032 -164873126 + AT_rich Low_complexity Low_complexity 1 41 0 1474 200 161 36 chr3 53164589 53165179 -164871979 + HAL1 LINE L1 908 1571 -936 559 259 178 82 chr3 53165233 53165941 -164871217 + HAL1 LINE L1 1732 2507 0 2424 111 10 97 chr3 53166052 53166570 -164870588 + MER4B LTR ERV1 1 581 -185 2380 93 0 3 chr3 53166570 53166880 -164870278 - AluY SINE Alu -2 309 1 2424 111 10 97 chr3 53166880 53167052 -164870106 + MER4B LTR ERV1 581 766 0 198 255 21 0 chr3 53167061 53167108 -164870050 - L3b LINE CR1 -3 1580 1533 2161 152 47 3 chr3 53168230 53168593 -164868565 - MER4D LTR ERV1 0 903 525 1838 139 15 0 chr3 53168604 53168877 -164868281 - AluJb SINE Alu -27 285 9 288 173 0 19 chr3 53168880 53168932 -164868226 - Alu SINE Alu -250 51 1 * 3151 131 27 57 chr3 53168932 53169492 -164867666 - MER4D LTR ERV1 -289 504 1 2655 53 98 0 chr3 53169928 53170285 -164866873 + LTR17 LTR ERV1 389 780 0 1994 157 40 11 chr3 53170600 53170951 -164866207 + LTR49 LTR ERV1 1 361 -234 12832 30 3 6 chr3 53170951 53172473 -164864685 - L1PA3 LINE L1 -1485 4661 3145 8187 24 0 2 chr3 53172474 53173987 -164863171 + L1PA3 LINE L1 4644 6154 -1 1171 157 46 14 chr3 53174002 53174219 -164862939 + LTR49 LTR ERV1 370 593 -2 212 263 125 100 chr3 53174690 53174850 -164862308 - MIR SINE MIR -64 198 35 439 241 100 24 chr3 53175219 53175389 -164861769 + L1P LINE L1 3586 3768 -2378 4028 135 33 55 chr3 53175395 53175884 -164861274 + MER50 LTR ERV1 1 470 -264 2063 133 0 3 chr3 53175884 53176184 -164860974 + AluSx SINE Alu 1 299 -13 4028 135 33 55 chr3 53176184 53176421 -164860737 + MER50 LTR ERV1 470 711 -23 672 111 0 10 chr3 53176578 53176677 -164860481 + L1PA7 LINE L1 328 425 -6036 586 95 11 0 chr3 53176662 53176757 -164860401 + L1PA7 LINE L1 1302 1397 -5064 * 6841 75 32 0 chr3 53176758 53178079 -164859079 + L1PA7 LINE L1 5121 6469 0 706 313 116 38 chr3 53178340 53178404 -164858754 + L1 LINE L1 3963 4021 -2125 1644 193 3 7 chr3 53178404 53178689 -164858469 - AluJo SINE Alu -28 284 1 706 313 116 38 chr3 53178689 53178825 -164858333 + L1 LINE L1 4021 4145 -2001 2212 95 3 0 chr3 53178825 53179143 -164858015 + AluSq SINE Alu 1 319 0 706 313 116 38 chr3 53179143 53179624 -164857534 + L1 LINE L1 4145 4699 -1447 247 206 65 11 chr3 53179670 53179762 -164857396 + L1 LINE L1 4735 4831 -1315 28 48 0 0 chr3 53179865 53179907 -164857251 + AT_rich Low_complexity Low_complexity 1 42 0 306 319 127 53 chr3 53180138 53180360 -164856798 + L1MC/D LINE L1 5255 5459 -2349 2325 82 3 7 chr3 53180360 53180654 -164856504 - AluY SINE Alu -18 293 1 306 319 127 53 chr3 53180654 53180902 -164856256 + L1MC/D LINE L1 5459 5760 -2048 1014 167 0 103 chr3 53181094 53181328 -164855830 - AluJb SINE Alu -19 293 84 1620 234 124 60 chr3 53184282 53184484 -164852674 - HsTC2a DNA Tc2 -1189 711 523 2080 95 3 60 chr3 53184484 53184799 -164852359 - AluSx SINE Alu -15 297 1 1620 234 124 60 chr3 53184799 53185264 -164851894 - HsTC2a DNA Tc2 -1377 523 1 2529 124 52 0 chr3 53185691 53186095 -164851063 - MSTB1 LTR MaLR -7 425 1 1842 121 7 18 chr3 53186611 53186893 -164850265 + L1M3 LINE L1 5445 5723 -448 1142 161 31 0 chr3 53186893 53187086 -164850072 + MSTB1 LTR MaLR 1 199 -233 3119 165 23 14 chr3 53187188 53187297 -164849861 + L1MB3 LINE L1 5614 5721 -462 2502 159 31 5 chr3 53187297 53187718 -164849440 + MSTB1 LTR MaLR 1 432 0 3119 165 23 14 chr3 53187718 53188172 -164848986 + L1MB3 LINE L1 5721 6182 -1 2056 117 10 17 chr3 53189039 53189329 -164847829 + AluSq SINE Alu 1 290 -23 528 93 0 0 chr3 53189329 53189404 -164847754 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 2188 118 3 0 chr3 53189700 53189996 -164847162 - AluSg SINE Alu -12 298 2 1425 285 76 17 chr3 53191233 53192110 -164845048 + L2 LINE L2 2394 3313 0 21 36 0 0 chr3 53193151 53193179 -164843979 + AT_rich Low_complexity Low_complexity 1 28 0 475 192 192 6 chr3 53193242 53193414 -164843744 + L1MD2 LINE L1 5127 5330 -816 5314 42 0 0 chr3 53193417 53194014 -164843144 + L1PA5 LINE L1 5558 6154 0 3179 60 11 0 chr3 53194053 53194434 -164842724 + L1PA5 LINE L1 5770 6154 0 5530 153 55 16 chr3 53194435 53195209 -164841949 + L1MD2 LINE L1 5319 6142 -217 2138 117 13 3 chr3 53195209 53195509 -164841649 + AluSq SINE Alu 1 303 -10 5530 153 55 16 chr3 53195509 53195736 -164841422 + L1MD2 LINE L1 6142 6359 0 410 233 45 30 chr3 53197433 53197566 -164839592 - MIR SINE MIR -40 222 88 610 250 75 27 chr3 53197571 53197759 -164839399 - L2 LINE L2 -727 2587 2391 1502 249 98 29 chr3 53197806 53198355 -164838803 + L1MEc LINE L1 44 630 -5766 820 164 23 29 chr3 53198359 53198530 -164838628 + L1MEc LINE L1 1949 2118 -4278 4725 188 14 45 chr3 53198632 53199726 -164837432 + L1 LINE L1 3613 4672 -1543 798 208 147 25 chr3 53199746 53199943 -164837215 - MER58A DNA MER1_type -3 221 1 346 194 11 43 chr3 53200344 53200437 -164836721 - LTR49 LTR ERV1 -30 565 476 * 994 166 73 29 chr3 53200415 53200620 -164836538 - LTR29 LTR ERV1 -408 214 1 2350 83 10 7 chr3 53200749 53201051 -164836107 - AluSq SINE Alu -8 305 3 277 239 76 22 chr3 53201879 53201971 -164835187 + L1MEc LINE L1 2298 2394 -4002 2092 87 0 0 chr3 53201972 53202236 -164834922 + AluY SINE Alu 40 303 -8 757 102 0 9 chr3 53202246 53202354 -164834804 + L1MC3 LINE L1 6712 6818 -967 1137 151 28 5 chr3 53202355 53202567 -164834591 + L1MC3 LINE L1 7568 7784 -1 1837 143 21 0 chr3 53202787 53203066 -164834092 - AluJb SINE Alu -5 307 23 1298 283 121 18 chr3 53204061 53204622 -164832536 - L1MC4a LINE L1 -1857 5951 5333 1010 175 124 0 chr3 53204788 53205005 -164832153 - L1MC2 LINE L1 -16 6328 6085 1144 221 157 27 chr3 53205005 53205336 -164831822 + MLT1A2 LTR MaLR 1 374 0 3541 129 9 35 chr3 53205339 53205914 -164831244 - L1MC2 LINE L1 -258 6086 5527 2106 136 0 16 chr3 53205953 53206269 -164830889 - AluSx SINE Alu -1 311 1 3052 229 81 20 chr3 53206272 53207207 -164829951 - L1MC4a LINE L1 -841 5305 4314 2093 115 0 0 chr3 53207346 53207624 -164829534 + AluSq SINE Alu 1 278 -35 923 246 223 8 chr3 53208213 53208567 -164828591 + LTR16A LTR ERVL 21 450 0 481 295 107 42 chr3 53208734 53209070 -164828088 + MARNA DNA Mariner 10 367 -219 4675 174 55 18 chr3 53209207 53210204 -164826954 - L1MB8 LINE L1 -11 6167 5110 2365 84 0 3 chr3 53210204 53210503 -164826655 - AluY SINE Alu -13 298 1 4675 174 55 18 chr3 53210503 53210859 -164826299 - L1MB8 LINE L1 -1068 5110 4769 1039 279 155 15 chr3 53210889 53211486 -164825672 - L2 LINE L2 0 3313 2633 1932 272 164 5 chr3 53211589 53212369 -164824789 - L2 LINE L2 -1209 2105 1202 342 236 142 42 chr3 53212372 53212584 -164824574 - L2 LINE L2 -2505 809 577 28 29 0 0 chr3 53212852 53212887 -164824271 + AT_rich Low_complexity Low_complexity 1 35 0 416 226 47 28 chr3 53213481 53213629 -164823529 + L1ME2 LINE L1 5730 5883 -281 360 83 0 0 chr3 53214411 53214459 -164822699 - MSTA LTR MaLR -374 54 7 2490 77 0 0 chr3 53215433 53215744 -164821414 - L1PA8 LINE L1 0 6172 5862 434 250 98 0 chr3 53216617 53216729 -164820429 - MIR SINE MIR -93 169 47 1041 255 54 57 chr3 53217423 53218237 -164818921 + L1ME2 LINE L1 827 3581 -1305 2158 121 51 28 chr3 53218237 53218593 -164818565 + THE1B LTR MaLR 1 364 0 8132 115 22 85 chr3 53218593 53219020 -164818138 + THE1B-int LTR MaLR 1 454 -1197 2117 128 0 7 chr3 53219020 53219324 -164817834 - AluSq SINE Alu -11 302 1 8132 115 22 85 chr3 53219324 53220714 -164816444 + THE1B-int LTR MaLR 454 1651 0 1843 121 130 30 chr3 53220714 53221045 -164816113 + THE1B LTR MaLR 1 364 0 848 226 80 40 chr3 53221072 53221272 -164815886 + L1ME2 LINE L1 3606 3821 -2325 1690 197 3 0 chr3 53221272 53221561 -164815597 + AluJo SINE Alu 1 290 -22 848 226 80 40 chr3 53221561 53221635 -164815523 + L1ME2 LINE L1 3821 3891 -2255 1292 266 16 7 chr3 53221753 53222189 -164814969 + L1ME2 LINE L1 3895 4334 -1812 1510 159 26 0 chr3 53222196 53222460 -164814698 - Tigger3(Golem) DNA MER2_type -3 3026 2756 1331 155 5 0 chr3 53222460 53222660 -164814498 + AluSg/x SINE Alu 97 297 -13 386 239 0 0 chr3 53222660 53222731 -164814427 - Tigger3(Golem) DNA MER2_type -2958 71 1 3271 217 65 23 chr3 53222756 53223080 -164814078 + L1ME2 LINE L1 4410 4719 -1445 2248 97 3 7 chr3 53223080 53223390 -164813768 + AluSc SINE Alu 1 309 0 3271 217 65 23 chr3 53223390 53224747 -164812411 + L1ME2 LINE L1 4719 6154 -10 223 309 59 0 chr3 53225264 53225332 -164811826 + L2 LINE L2 3185 3256 -16 2371 97 0 0 chr3 53225696 53226005 -164811153 - AluY SINE Alu -2 309 1 2300 101 0 16 chr3 53226034 53226342 -164810816 - AluSg SINE Alu -7 303 1 1409 166 33 2 chr3 53227033 53227331 -164809827 + L1MC2 LINE L1 5698 5999 -334 1750 70 91 0 chr3 53227342 53227584 -164809574 - AluY SINE Alu -4 307 44 1531 209 7 7 chr3 53227593 53227919 -164809239 - AluJb SINE Alu 0 326 1 308 145 53 13 chr3 53227921 53227997 -164809161 + L1MC2 LINE L1 6258 6336 -8 915 122 0 0 chr3 53228651 53228774 -164808384 + FRAM SINE Alu 33 155 -21 800 203 5 15 chr3 53228928 53229130 -164808028 + L1ME3 LINE L1 5689 5888 -278 1279 207 30 41 chr3 53229232 53230051 -164807107 - L1M4 LINE L1 -1204 4942 4015 4010 175 24 16 chr3 53230290 53231085 -164806073 + L1MB4 LINE L1 5380 6180 0 594 296 34 45 chr3 53231371 53231870 -164805288 - LTR67 LTR ERVL 0 557 6 513 341 118 30 chr3 53231933 53232299 -164804859 - L2 LINE L2 -339 2975 2578 239 303 67 0 chr3 53232421 53232510 -164804648 - L2 LINE L2 -941 2373 2279 249 294 85 100 chr3 53233537 53234128 -164803030 + L2 LINE L2 2278 2859 -455 275 214 164 0 chr3 53235428 53235568 -164801590 + L1ME3 LINE L1 5893 6055 -107 194 226 21 21 chr3 53235827 53235920 -164801238 + (TA)n Simple_repeat Simple_repeat 2 94 0 261 0 0 0 chr3 53235941 53235970 -164801188 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr3 53236254 53236275 -164800883 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 53236313 53236334 -164800824 + AT_rich Low_complexity Low_complexity 1 21 0 1418 148 4 18 chr3 53237666 53237895 -164799263 + AluJb SINE Alu 84 309 -3 239 219 110 75 chr3 53237983 53238211 -164798947 + HAL1b LINE L1 300 535 -813 278 275 38 0 chr3 53238281 53238361 -164798797 + MER5A DNA MER1_type 9 91 -98 329 304 168 0 chr3 53238434 53238595 -164798563 + HAL1b LINE L1 664 851 -497 230 302 20 0 chr3 53238799 53238948 -164798210 + L1MDa LINE L1 2491 2642 -3898 234 168 53 44 chr3 53239295 53239408 -164797750 + (TA)n Simple_repeat Simple_repeat 1 114 0 1469 124 50 124 chr3 53239418 53239780 -164797378 + MER44D DNA MER2_type 2 606 -3 240 35 0 0 chr3 53239781 53239810 -164797348 + (TG)n Simple_repeat Simple_repeat 2 30 0 2153 108 3 26 chr3 53240518 53240825 -164796333 + AluSx SINE Alu 1 300 -12 442 216 46 22 chr3 53241466 53241618 -164795540 - L1MD2 LINE L1 -24 6142 6003 23 33 0 0 chr3 53241626 53241656 -164795502 + AT_rich Low_complexity Low_complexity 1 30 0 201 180 0 0 chr3 53243382 53243432 -164793726 + GA-rich Low_complexity Low_complexity 1 50 0 2012 142 35 0 chr3 53243877 53244165 -164792993 - AluSx SINE Alu -9 303 6 2296 104 0 19 chr3 53244171 53244480 -164792678 - AluSc SINE Alu -6 303 1 285 203 101 0 chr3 53244537 53244606 -164792552 - MER5C DNA MER1_type -248 76 1 355 249 13 3 chr3 53245774 53245908 -164791250 - L1ME1 LINE L1 -2 6162 6025 387 0 0 0 chr3 53246518 53246561 -164790597 + (CA)n Simple_repeat Simple_repeat 1 43 0 411 220 409 5 chr3 53250191 53250377 -164786781 - MIR SINE MIR 0 262 2 21 36 0 0 chr3 53250398 53250426 -164786732 + AT_rich Low_complexity Low_complexity 1 28 0 270 188 14 29 chr3 53251032 53251101 -164786057 + L1MB8 LINE L1 6110 6177 -1 186 298 0 0 chr3 53251513 53251560 -164785598 - MIR SINE MIR -106 156 110 180 337 58 12 chr3 53251826 53251912 -164785246 - MIR SINE MIR -15 247 158 269 135 19 0 chr3 53252024 53252076 -164785082 + CT-rich Low_complexity Low_complexity 2 54 0 298 258 45 0 chr3 53252102 53252191 -164784967 + L1MC4 LINE L1 7936 8028 -14 2372 65 10 3 chr3 53252290 53252596 -164784562 - AluY SINE Alu -3 308 1 2388 110 0 0 chr3 53253420 53253730 -164783428 + AluSx SINE Alu 1 310 -2 2304 95 26 0 chr3 53254271 53254575 -164782583 - AluSx SINE Alu 0 312 1 747 125 21 7 chr3 53254612 53254756 -164782402 - L1MA9 LINE L1 0 6312 6167 1184 145 24 95 chr3 53255197 53255493 -164781665 + L1 LINE L1 4674 4948 -1198 * 2246 212 40 34 chr3 53255487 53256228 -164780930 + L1MDa LINE L1 1279 2024 -4516 582 236 67 39 chr3 53256229 53256437 -164780721 - MLT1C LTR MaLR 0 467 254 1223 151 33 154 chr3 53258018 53258350 -164778808 - AluJo SINE Alu -10 292 1 205 257 250 29 chr3 53259215 53259355 -164777803 + MER5A DNA MER1_type 1 171 -18 985 302 133 9 chr3 53259658 53260288 -164776870 - L1MC4a LINE L1 -1635 6173 5466 590 278 16 32 chr3 53260302 53260550 -164776608 - L1ME1 LINE L1 -7 6159 5916 * 6660 172 72 101 chr3 53260541 53261182 -164775976 - L1MDa LINE L1 -3691 2849 2191 615 203 109 0 chr3 53261182 53261310 -164775848 + FLAM_C SINE Alu 1 142 -1 6660 172 72 101 chr3 53261310 53261608 -164775550 - L1MDa LINE L1 -4349 2191 1886 504 117 0 0 chr3 53261608 53261685 -164775473 + (TATG)n Simple_repeat Simple_repeat 4 80 0 6660 172 72 101 chr3 53261685 53261710 -164775448 - L1MDa LINE L1 -4654 1886 1862 2186 130 0 0 chr3 53261710 53262003 -164775155 - AluSq SINE Alu -20 293 1 6660 172 72 101 chr3 53262003 53262441 -164774717 - L1MDa LINE L1 -4678 1862 1413 2233 112 3 3 chr3 53262441 53262744 -164774414 - AluSg SINE Alu -7 303 1 6660 172 72 101 chr3 53262744 53263092 -164774066 - L1MDa LINE L1 -5127 1413 1056 2270 125 3 0 chr3 53263092 53263403 -164773755 - AluSx SINE Alu 0 312 1 6660 172 72 101 chr3 53263403 53263924 -164773234 - L1MDa LINE L1 -5484 1056 516 402 288 61 43 chr3 53263939 53264102 -164773056 - MIR3 SINE MIR -15 193 28 21 57 0 0 chr3 53264619 53264654 -164772504 + AT_rich Low_complexity Low_complexity 1 35 0 416 315 99 6 chr3 53265633 53265976 -164771182 + L1M4 LINE L1 3989 4363 -1783 828 159 134 104 chr3 53266287 53266364 -164770794 - Charlie1 DNA MER1_type -2 2759 2686 2574 69 0 0 chr3 53266364 53266667 -164770491 + AluY SINE Alu 1 303 -8 828 159 134 104 chr3 53266667 53266742 -164770416 - Charlie1 DNA MER1_type -75 2686 2615 1888 162 30 3 chr3 53266742 53267038 -164770120 + AluJb SINE Alu 1 304 -8 828 159 134 104 chr3 53267038 53267279 -164769879 - Charlie1 DNA MER1_type -146 2615 2353 22 0 0 0 chr3 53270373 53270395 -164766763 + AT_rich Low_complexity Low_complexity 1 22 0 804 145 22 0 chr3 53270605 53270743 -164766415 + L1MA5A LINE L1 6147 6287 -10 298 135 0 0 chr3 53270937 53270989 -164766169 + L1MA4A LINE L1 4826 4877 -1269 545 158 0 0 chr3 53270999 53271081 -164766077 + AluS SINE Alu 1 82 -231 2497 72 0 0 chr3 53271081 53271385 -164765773 + AluY SINE Alu 1 304 -7 1533 136 0 5 chr3 53271387 53271608 -164765550 + AluSc SINE Alu 77 296 -13 5233 133 39 42 chr3 53271615 53272962 -164764196 + L1MA4A LINE L1 4885 6218 -85 1739 170 43 3 chr3 53272962 53273244 -164763914 - AluJb SINE Alu -19 293 1 5233 133 39 42 chr3 53273244 53273329 -164763829 + L1MA4A LINE L1 6218 6302 -1 260 241 11 0 chr3 53273318 53273405 -164763753 - L1ME4a LINE L1 -62 6059 5972 * 266 202 53 21 chr3 53273414 53273508 -164763650 - L1ME4a LINE L1 -194 5927 5831 40597 35 22 1 chr3 53274733 53280758 -164756400 + L1PA2 LINE L1 2 6154 -1 2003 257 86 7 chr3 53280804 53281411 -164755747 + L1MDb LINE L1 7 644 -5765 424 196 65 78 chr3 53281407 53281560 -164755598 + L1MDb LINE L1 452 602 -5807 * 1884 125 14 17 chr3 53282853 53283166 -164753992 - AluSx SINE Alu 0 312 1 2117 134 27 0 chr3 53283172 53283471 -164753687 - AluSg SINE Alu -3 307 1 425 304 93 16 chr3 53284314 53284508 -164752650 + MIR SINE MIR 42 250 -12 2300 92 0 3 chr3 53284553 53284847 -164752311 - AluSg SINE Alu -17 293 1 375 316 153 37 chr3 53285206 53285421 -164751737 + MIR SINE MIR 18 257 -5 2411 103 0 0 chr3 53287378 53287689 -164749469 + AluSx SINE Alu 1 311 -1 26 30 0 0 chr3 53288119 53288152 -164749006 + AT_rich Low_complexity Low_complexity 1 33 0 2288 121 0 3 chr3 53288346 53288660 -164748498 + AluSq SINE Alu 1 313 0 1702 177 40 13 chr3 53288788 53289087 -164748071 + AluJb SINE Alu 6 312 0 668 284 85 34 chr3 53289708 53290179 -164746979 - L1ME4a LINE L1 -170 5951 5457 1871 167 3 19 chr3 53290549 53290861 -164746297 + AluJo SINE Alu 1 307 -5 2339 65 17 3 chr3 53291080 53291372 -164745786 + AluY SINE Alu 1 296 -15 521 187 56 9 chr3 53293158 53293265 -164743893 + LTR18B LTR ERVL 1 112 -502 1592 120 130 3 chr3 53293289 53293581 -164743577 + LTR18B LTR ERVL 286 614 0 208 217 43 0 chr3 53294233 53294279 -164742879 + GA-rich Low_complexity Low_complexity 3 50 0 333 293 55 50 chr3 53295871 53296052 -164741106 + HAL1b LINE L1 135 316 -1032 468 284 90 30 chr3 53296710 53297009 -164740149 + L1M4 LINE L1 3253 3569 -2577 269 290 101 19 chr3 53297111 53297318 -164739840 + L1MC4a LINE L1 6420 6643 -1165 284 258 94 34 chr3 53297477 53297775 -164739383 + L1M4 LINE L1 2176 2491 -3655 758 103 0 3 chr3 53298316 53298553 -164738605 + AluSx SINE Alu 1 310 0 339 230 58 11 chr3 53298558 53298645 -164738513 + L1MC4 LINE L1 5557 5647 -2161 300 326 14 7 chr3 53298703 53298844 -164738314 + L1MC4 LINE L1 5781 5922 -1886 494 295 98 28 chr3 53299414 53299699 -164737459 + L1MC4 LINE L1 7433 7737 -305 5084 119 36 5 chr3 53299722 53300479 -164736679 + LTR17 LTR ERV1 1 780 0 39183 65 2 3 chr3 53300527 53306686 -164730472 + L1PA5 LINE L1 3 6154 0 810 152 19 44 chr3 53306706 53306864 -164730294 + AluJb SINE Alu 159 312 0 24 32 0 0 chr3 53308395 53308426 -164728732 + AT_rich Low_complexity Low_complexity 1 31 0 2497 60 0 3 chr3 53308535 53308836 -164728322 + AluY SINE Alu 1 300 -11 1214 166 18 14 chr3 53309005 53309228 -164727930 + MER58A DNA MER1_type 1 224 0 1866 143 35 0 chr3 53310119 53310406 -164726752 - AluJb SINE Alu -15 297 1 448 211 134 0 chr3 53310607 53310749 -164726409 + L1MC/D LINE L1 5343 5503 -2305 786 279 85 14 chr3 53310854 53311148 -164726010 + LTR16B LTR ERVL 115 429 -35 2062 144 7 0 chr3 53311254 53311546 -164725612 - AluSx SINE Alu -18 294 1 357 333 0 0 chr3 53311601 53311724 -164725434 - HAL1 LINE L1 -1639 868 746 857 238 158 23 chr3 53311749 53312191 -164724967 - HAL1 LINE L1 -126 2381 1880 514 224 17 11 chr3 53312200 53312374 -164724784 - HAL1 LINE L1 -1244 1263 1089 1725 302 89 47 chr3 53312382 53312994 -164724164 - HAL1 LINE L1 -1471 1036 366 1196 102 0 0 chr3 53312994 53313170 -164723988 - L1MA5A LINE L1 0 6297 6122 1725 302 89 47 chr3 53313170 53313550 -164723608 - HAL1 LINE L1 -2141 366 3 355 279 126 0 chr3 53314300 53314411 -164722747 - L2 LINE L2 -1 3312 3188 210 338 28 0 chr3 53315063 53315134 -164722024 - L2 LINE L2 -214 3058 2986 199 319 126 8 chr3 53315426 53315545 -164721613 - L2 LINE L2 -673 2641 2509 1245 147 36 0 chr3 53315834 53316093 -164721065 + Tigger4(Zombi) DNA MER2_type 75 2731 0 853 138 15 0 chr3 53316131 53316261 -164720897 + FLAM_C SINE Alu 2 133 0 560 307 120 26 chr3 53316551 53317162 -164719996 + L1MEc LINE L1 823 1477 -4738 237 282 0 0 chr3 53317192 53317270 -164719888 + L1MEc LINE L1 1595 1672 -4724 935 152 0 67 chr3 53317304 53317482 -164719676 - AluJb SINE Alu -146 166 1 208 0 0 0 chr3 53317482 53317505 -164719653 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 1759 158 7 18 chr3 53317505 53317790 -164719368 - AluJo SINE Alu -1 304 1 6897 112 114 20 chr3 53318452 53319578 -164717580 - Tigger3b DNA MER2_type 0 1231 1 482 247 72 50 chr3 53319931 53320332 -164716826 + MLT1J2 LTR MaLR 1 448 -2 551 250 172 15 chr3 53320403 53320607 -164716551 + MIR SINE MIR 15 250 -12 405 0 0 0 chr3 53321051 53321096 -164716062 + (TA)n Simple_repeat Simple_repeat 2 46 0 2384 87 0 13 chr3 53321796 53322096 -164715062 + AluSx SINE Alu 1 296 -16 184 411 37 0 chr3 53322270 53322377 -164714781 - L2 LINE L2 -336 2977 2867 245 171 114 0 chr3 53322519 53322589 -164714569 + L1MC4 LINE L1 7965 8042 0 335 307 80 85 chr3 53322664 53322876 -164714282 - L2 LINE L2 -8 3264 3054 363 258 119 114 chr3 53323307 53323682 -164713476 + L1ME4a LINE L1 5258 5639 -482 288 0 0 0 chr3 53323682 53323714 -164713444 + (TA)n Simple_repeat Simple_repeat 1 32 0 363 258 119 114 chr3 53323714 53323970 -164713188 + L1ME4a LINE L1 5639 5892 -229 501 318 60 21 chr3 53324020 53324253 -164712905 - MIR SINE MIR -6 256 15 332 229 133 0 chr3 53324345 53324450 -164712708 + L1ME4a LINE L1 6002 6120 -1 2502 68 0 0 chr3 53324555 53324863 -164712295 - AluY SINE Alu -3 308 1 273 302 87 27 chr3 53325087 53325236 -164711922 - MIR3 SINE MIR -9 199 42 2476 57 0 10 chr3 53327715 53328014 -164709144 - AluY SINE Alu -15 296 1 1351 199 60 4 chr3 53328183 53328464 -164708694 + L1MD3 LINE L1 7699 7995 0 1708 143 6 65 chr3 53328478 53328799 -164708359 + AluJb SINE Alu 1 302 -10 381 256 107 55 chr3 53329091 53329400 -164707758 + L1ME4a LINE L1 5767 6091 -30 2197 83 48 0 chr3 53329407 53329696 -164707462 + AluSx SINE Alu 1 303 -9 220 246 18 60 chr3 53330904 53331071 -164706087 + (CGGGG)n Simple_repeat Simple_repeat 5 164 0 381 300 21 38 chr3 53331515 53331755 -164705403 + L2 LINE L2 2890 3125 -188 2385 83 0 0 chr3 53331774 53332075 -164705083 - AluSx SINE Alu -11 301 1 1912 131 13 22 chr3 53332077 53332389 -164704769 + MER44D DNA MER2_type 29 607 -2 196 310 69 0 chr3 53332392 53332450 -164704708 + L2 LINE L2 3247 3308 -5 540 114 114 0 chr3 53333083 53333171 -164703987 - Tigger7 DNA MER2_type -1 2486 2389 * 1449 184 7 26 chr3 53333169 53333219 -164703939 - Tigger7 DNA MER2_type -466 267 218 3292 104 9 0 chr3 53333219 53333643 -164703515 + MSTA LTR MaLR 1 428 0 1449 184 7 26 chr3 53333643 53333864 -164703294 - Tigger7 DNA MER2_type -515 218 1 305 288 110 25 chr3 53333896 53334014 -164703144 - L1ME LINE L1 -5686 844 717 436 308 29 69 chr3 53334119 53334466 -164702692 - L1ME LINE L1 -6190 350 18 381 228 103 28 chr3 53334468 53334613 -164702545 - L1MC/D LINE L1 -2345 5463 5308 2056 130 10 0 chr3 53334851 53335144 -164702014 - AluSx SINE Alu -16 296 1 2229 102 0 20 chr3 53335206 53335511 -164701647 - AluSx SINE Alu -13 299 1 347 346 117 8 chr3 53335513 53335779 -164701379 - L1MC/D LINE L1 -1111 5035 4741 270 266 9 62 chr3 53336115 53336228 -164700930 - LTR33A LTR ERVL -2 521 415 304 392 19 0 chr3 53336602 53336760 -164700398 - L1MC/D LINE L1 -1689 4457 4297 959 156 0 0 chr3 53336792 53336946 -164700212 - AluSc SINE Alu -6 303 150 21 36 0 0 chr3 53336985 53337013 -164700145 + AT_rich Low_complexity Low_complexity 1 28 0 290 321 14 50 chr3 53337019 53337076 -164700082 - L1MC/D LINE L1 -2057 4089 4031 9052 65 4 1 chr3 53337076 53338144 -164699014 + MER11C LTR ERVK 1 1071 0 290 321 14 50 chr3 53338144 53338307 -164698851 - L1MC/D LINE L1 -2115 4031 3877 2203 254 146 19 chr3 53338340 53339093 -164698065 - L2 LINE L2 -534 2780 1932 400 321 71 37 chr3 53339187 53339483 -164697675 + L1M4 LINE L1 2162 2467 -3679 535 305 58 6 chr3 53339483 53339657 -164697501 + L2 LINE L2 2892 3074 -239 292 211 70 0 chr3 53340524 53340595 -164696563 + MIR3 SINE MIR 127 202 -6 246 128 0 0 chr3 53340666 53340705 -164696453 + (A)n Simple_repeat Simple_repeat 1 39 0 2141 110 34 0 chr3 53340711 53341003 -164696155 + AluSx SINE Alu 1 302 -10 2262 216 85 6 chr3 53341087 53341569 -164695589 + LTR33 LTR ERVL 2 521 0 1866 259 47 37 chr3 53342071 53342585 -164694573 - LTR40a LTR ERVL 0 519 1 22 0 0 0 chr3 53342723 53342745 -164694413 + AT_rich Low_complexity Low_complexity 1 22 0 320 310 41 85 chr3 53343147 53343537 -164693621 - L2 LINE L2 -89 3183 2811 2203 100 3 7 chr3 53344051 53344350 -164692808 - AluSc SINE Alu -11 298 1 207 191 0 0 chr3 53344434 53344481 -164692677 + A-rich Low_complexity Low_complexity 1 47 0 1065 249 215 15 chr3 53344487 53344896 -164692262 - LTR16C LTR ERVL 0 491 1 1760 154 3 23 chr3 53345313 53345618 -164691540 + AluJb SINE Alu 1 299 -13 2198 95 0 3 chr3 53345618 53345929 -164691229 + AluSx SINE Alu 1 311 0 1974 208 113 14 chr3 53347273 53347758 -164689400 - MLT1F1 LTR MaLR -24 543 11 2293 87 3 43 chr3 53347954 53348276 -164688882 + AluSc SINE Alu 1 309 0 372 355 16 0 chr3 53349834 53349955 -164687203 - MIR3 SINE MIR -52 156 34 226 208 0 0 chr3 53350380 53350428 -164686730 + (CA)n Simple_repeat Simple_repeat 1 48 0 382 225 45 11 chr3 53350429 53350518 -164686640 - L1MC4 LINE L1 -149 7893 7802 * 485 230 0 26 chr3 53350508 53350621 -164686537 - L1MC4a LINE L1 -1080 6728 6619 2325 60 0 0 chr3 53350736 53351018 -164686140 - AluY SINE Alu -29 282 1 661 224 37 66 chr3 53351023 53351356 -164685802 - L1MC4a LINE L1 -2150 5658 5265 2457 67 0 3 chr3 53351366 53351663 -164685495 - AluY SINE Alu -7 304 9 246 32 0 0 chr3 53351768 53351799 -164685359 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 297 307 63 0 chr3 53351877 53352004 -164685154 - L1MC4a LINE L1 -1127 5019 4885 927 252 132 42 chr3 53352189 53352666 -164684492 + LTR33 LTR ERVL 1 520 -1 447 256 132 71 chr3 53352822 53352922 -164684236 + MARNA DNA Mariner 262 355 -231 2164 96 0 0 chr3 53352922 53353193 -164683965 + AluSc SINE Alu 27 297 -12 447 256 132 71 chr3 53353193 53353358 -164683800 + MARNA DNA Mariner 355 543 -43 2006 132 24 3 chr3 53353499 53353795 -164683363 - AluJb SINE Alu -10 302 1 1802 118 97 18 chr3 53354218 53354497 -164682661 - AluSx SINE Alu -11 301 1 1379 161 75 48 chr3 53354788 53354831 -164682327 - MLT2B2 LTR ERVL 0 515 475 378 61 0 0 chr3 53354831 53354880 -164682278 + (TG)n Simple_repeat Simple_repeat 2 50 0 1379 161 75 48 chr3 53354880 53355128 -164682030 - MLT2B2 LTR ERVL -40 475 216 560 216 81 81 chr3 53405228 53405413 -164631745 + MIR3 SINE MIR 19 203 -5 2371 102 0 0 chr3 53405753 53406047 -164631111 - AluSx SINE Alu -16 296 3 246 231 62 0 chr3 53407088 53407153 -164630005 - MIR3 SINE MIR -52 156 88 237 277 159 28 chr3 53408133 53408259 -164628899 + MIR SINE MIR 39 176 -78 2059 131 3 7 chr3 53408352 53408649 -164628509 - AluSx SINE Alu -16 296 1 2428 72 3 7 chr3 53409186 53409492 -164627666 - AluSx SINE Alu -3 309 5 244 320 13 26 chr3 53410208 53410286 -164626872 + L2 LINE L2 3194 3270 -2 1381 187 79 7 chr3 53411627 53411905 -164625253 - AluJb SINE Alu -14 298 1 1935 156 0 3 chr3 53412786 53413087 -164624071 - AluSx SINE Alu -12 300 1 252 314 0 23 chr3 53413740 53413826 -164623332 - MIR SINE MIR -5 257 174 274 348 0 0 chr3 53414312 53414381 -164622777 - L2 LINE L2 -14 3258 3190 2272 113 0 0 chr3 53414929 53415229 -164621929 + AluSg SINE Alu 1 300 -10 288 289 113 28 chr3 53415590 53415732 -164621426 + MIR3 SINE MIR 33 186 -22 293 226 78 10 chr3 53417731 53417833 -164619325 - MLT1L LTR MaLR 0 615 507 258 331 50 33 chr3 53417893 53418074 -164619084 - MLT1L LTR MaLR -204 411 228 1928 158 3 22 chr3 53418203 53418519 -164618639 + AluSx SINE Alu 3 312 0 2547 75 0 0 chr3 53419288 53419596 -164617562 - AluSg SINE Alu 0 310 3 426 20 0 0 chr3 53420251 53420302 -164616856 + (TG)n Simple_repeat Simple_repeat 2 52 0 195 42 0 0 chr3 53420324 53420348 -164616810 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 2204 92 0 7 chr3 53420352 53420634 -164616524 - AluSp SINE Alu -33 280 1 346 277 36 29 chr3 53420950 53421087 -164616071 + MER103 DNA DNA 29 166 0 232 373 124 6 chr3 53421392 53421553 -164615605 - MER5A DNA MER1_type -2 187 8 2272 88 3 14 chr3 53422063 53422358 -164614800 + AluSg SINE Alu 1 292 -18 309 328 57 34 chr3 53426325 53426590 -164610568 + L1MC5 LINE L1 4869 5139 -1007 1111 165 121 40 chr3 53426599 53426847 -164610311 + AluJo SINE Alu 1 268 -44 1870 238 125 23 chr3 53426873 53427599 -164609559 + L1MC5 LINE L1 5220 5394 -752 1456 208 151 116 chr3 53428048 53429320 -164607838 + L1MC5 LINE L1 6616 7931 -30 190 253 157 0 chr3 53429320 53429403 -164607755 - L2 LINE L2 -1488 1826 1731 678 255 103 61 chr3 53429469 53429865 -164607293 + L1MC4a LINE L1 5494 5906 -1902 223 297 10 20 chr3 53429868 53429969 -164607189 + (CATA)n Simple_repeat Simple_repeat 4 103 0 21 0 0 0 chr3 53430756 53430777 -164606381 + AT_rich Low_complexity Low_complexity 1 21 0 2391 75 16 7 chr3 53431007 53431315 -164605843 - AluY SINE Alu 0 311 1 427 214 40 32 chr3 53431880 53432006 -164605152 - MER5A DNA MER1_type -8 181 55 1212 234 168 31 chr3 53432043 53432531 -164604627 - L1ME LINE L1 -5513 557 3 2053 127 3 0 chr3 53432749 53433060 -164604098 - AluSp SINE Alu 0 312 1 420 205 0 0 chr3 53434609 53434687 -164602471 - MIR SINE MIR -115 147 70 267 284 173 0 chr3 53435210 53435337 -164601821 - MIR SINE MIR -1 261 113 258 277 32 21 chr3 53435389 53435483 -164601675 + LTR16A1 LTR ERVL 62 156 -301 1799 170 13 13 chr3 53435651 53435957 -164601201 - AluJo SINE Alu -6 306 1 2228 95 0 0 chr3 53435964 53436279 -164600879 - AluY SINE Alu 0 315 1 273 324 19 0 chr3 53436521 53436626 -164600532 + HAL1 LINE L1 1557 1663 -844 688 202 0 138 chr3 53436633 53436701 -164600457 - MER45A DNA AcHobo -1413 168 92 2360 74 0 3 chr3 53436701 53437007 -164600151 + AluSp SINE Alu 1 305 0 688 202 0 138 chr3 53437007 53437125 -164600033 - MER45A DNA AcHobo -1489 92 7 2017 146 3 3 chr3 53437300 53437601 -164599557 + AluSx SINE Alu 1 301 -11 26 0 0 0 chr3 53437768 53437794 -164599364 + AT_rich Low_complexity Low_complexity 1 26 0 1716 237 60 75 chr3 53437822 53438392 -164598766 - MLT1E LTR MaLR -32 561 1 381 284 57 14 chr3 53439053 53439194 -164597964 + MIR3 SINE MIR 33 179 -29 1214 257 91 7 chr3 53439221 53439638 -164597520 + LTR16A1 LTR ERVL 4 455 -2 1310 153 36 5 chr3 53439756 53439979 -164597179 + MER30 DNA MER1_type 1 230 0 487 135 0 0 chr3 53440226 53440300 -164596858 + MADE1 DNA Mariner 1 74 -6 185 229 186 0 chr3 53441470 53441540 -164595618 - MIR SINE MIR -76 186 104 1071 189 85 0 chr3 53441682 53441883 -164595275 - MER58A DNA MER1_type -2 222 5 259 281 0 16 chr3 53441984 53442048 -164595110 - MER91B DNA MER1_type -127 63 1 668 93 0 47 chr3 53443213 53443320 -164593838 + AluSc SINE Alu 203 304 -5 250 336 104 15 chr3 53443410 53443544 -164593614 + MER5B DNA MER1_type 29 174 -4 198 0 0 0 chr3 53443627 53443649 -164593509 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 2378 104 3 0 chr3 53443861 53444169 -164592989 - AluSg SINE Alu -1 309 1 2598 63 0 0 chr3 53444520 53444852 -164592306 + AluY SINE Alu 1 332 0 432 215 0 11 chr3 53444972 53445065 -164592093 - L1M4 LINE L1 -2583 3563 3472 1634 258 37 50 chr3 53445147 53445709 -164591449 + L1MCb LINE L1 1 555 -5490 601 226 47 68 chr3 53445744 53445934 -164591224 + L1MCb LINE L1 647 832 -5213 581 238 0 0 chr3 53445925 53446047 -164591111 - L1MC3 LINE L1 -1286 6499 6378 * 216 284 140 48 chr3 53446603 53446959 -164590199 - L2 LINE L2 -959 2355 1967 1985 120 44 0 chr3 53447012 53447313 -164589845 + AluSq SINE Alu 1 313 0 1757 154 35 0 chr3 53447511 53447797 -164589361 - AluJo SINE Alu -5 307 12 848 267 155 36 chr3 53448075 53448577 -164588581 + L1ME4a LINE L1 5324 5885 -236 198 0 0 0 chr3 53448986 53449008 -164588150 + (TG)n Simple_repeat Simple_repeat 1 22 0 225 65 0 0 chr3 53449008 53449039 -164588119 + (GA)n Simple_repeat Simple_repeat 2 32 0 266 301 10 19 chr3 53449889 53449992 -164587166 - L2 LINE L2 0 3272 3171 2373 182 72 4 chr3 53449992 53450465 -164586693 - MLT1D LTR MaLR 0 505 1 183 225 67 22 chr3 53450839 53450928 -164586230 - L2 LINE L2 -566 2748 2656 1764 191 71 62 chr3 53450961 53451254 -164585904 + MLT1D LTR MaLR 21 321 -184 3510 120 11 35 chr3 53451254 53451794 -164585364 - MER1A DNA MER1_type 0 527 1 1764 191 71 62 chr3 53451794 53451981 -164585177 + MLT1D LTR MaLR 321 505 0 2223 92 0 7 chr3 53452127 53452420 -164584738 + AluY SINE Alu 20 310 -1 206 219 16 62 chr3 53452637 53452701 -164584457 - MIR SINE MIR -63 145 85 1779 207 24 5 chr3 53454043 53454420 -164582738 + MER63 DNA MER1_type 677 1060 -1 402 257 56 0 chr3 53454618 53454738 -164582420 + MIR SINE MIR 51 179 -54 256 275 58 109 chr3 53454742 53454880 -164582278 + MLT1J LTR MaLR 3 133 -378 1089 184 0 0 chr3 53454889 53455068 -164582090 - AluSg/x SINE Alu -2 310 132 905 261 61 55 chr3 53455079 53455230 -164581928 + MLT1J LTR MaLR 149 298 -213 2271 117 0 0 chr3 53455230 53455539 -164581619 + AluSx SINE Alu 1 309 -3 905 261 61 55 chr3 53455539 53455713 -164581445 + MLT1J LTR MaLR 298 476 -35 3008 132 20 14 chr3 53455720 53456228 -164580930 - L1MB4 LINE L1 0 6180 5670 704 227 46 41 chr3 53456398 53456592 -164580566 - MER63A DNA MER1_type -15 195 1 744 212 30 24 chr3 53456867 53457032 -164580126 + MLT1I LTR MaLR 244 409 0 677 271 93 61 chr3 53457039 53457578 -164579580 - L2 LINE L2 -1047 2267 1712 2157 126 3 3 chr3 53458288 53458590 -164578568 - AluSx SINE Alu -9 303 2 444 276 117 0 chr3 53459416 53459561 -164577597 - Charlie8 DNA MER1_type -2217 200 39 1073 201 28 26 chr3 53459797 53460098 -164577060 - MER2 DNA MER2_type 0 345 1 420 287 55 87 chr3 53461342 53461757 -164575401 - LTR16C LTR ERVL -13 478 77 325 230 24 56 chr3 53461828 53461954 -164575204 + MIR SINE MIR 128 249 -13 391 305 37 42 chr3 53462367 53462557 -164574601 - MIR SINE MIR -6 256 68 333 155 0 0 chr3 53462713 53462771 -164574387 + CT-rich Low_complexity Low_complexity 2 59 0 292 216 80 45 chr3 53463525 53463613 -164573545 + HERVL LTR ERVL 4480 4570 -1084 393 210 0 0 chr3 53464951 53465032 -164572126 + MER5A DNA MER1_type 26 106 -83 424 285 15 15 chr3 53465257 53465394 -164571764 + MIR SINE MIR 81 217 -45 216 339 0 0 chr3 53465438 53465497 -164571661 - MIR SINE MIR -3 259 201 213 303 0 0 chr3 53465779 53465845 -164571313 + MIR SINE MIR 196 261 -1 690 270 56 0 chr3 53465845 53466115 -164571043 - L1M4 LINE L1 -860 5286 5002 242 200 20 0 chr3 53466322 53466372 -164570786 - L1MC/D LINE L1 -553 5780 5730 264 279 109 16 chr3 53466571 53466754 -164570404 - L1MC/D LINE L1 -682 5480 5281 375 23 0 0 chr3 53466872 53466916 -164570242 + (CA)n Simple_repeat Simple_repeat 1 44 0 900 270 50 21 chr3 53466966 53467404 -164569754 - LTR16C LTR ERVL 0 491 15 256 222 202 0 chr3 53467496 53467595 -164569563 - MIR SINE MIR -92 170 52 748 213 24 12 chr3 53467715 53467879 -164569279 - MLT1F1 LTR MaLR 0 567 402 1436 179 6 82 chr3 53467911 53467988 -164569170 + L1MD2 LINE L1 6055 6136 -223 1615 144 58 41 chr3 53467988 53468280 -164568878 + AluJb SINE Alu 1 297 -15 1436 179 6 82 chr3 53468280 53468319 -164568839 + L1MD2 LINE L1 6136 6176 -183 210 37 0 0 chr3 53468319 53468346 -164568812 + (GA)n Simple_repeat Simple_repeat 2 28 0 1436 179 6 82 chr3 53468346 53468558 -164568600 + L1MD2 LINE L1 6176 6359 0 * 1726 254 56 2 chr3 53468556 53469024 -164568134 + L1ME3A LINE L1 5678 6170 0 299 228 146 16 chr3 53469055 53469178 -164567980 - MIR SINE MIR -18 244 106 1266 266 43 27 chr3 53470030 53470470 -164566688 + LTR16A1 LTR ERVL 1 447 -10 243 247 62 31 chr3 53470986 53471083 -164566075 - MLT1L LTR MaLR -335 280 181 2235 169 16 126 chr3 53471440 53472013 -164565145 - MLT2B3 LTR ERVL -8 546 37 269 331 17 23 chr3 53472018 53472193 -164564965 - L1MC/D LINE L1 -897 5462 5306 234 0 0 0 chr3 53472236 53472262 -164564896 + (T)n Simple_repeat Simple_repeat 1 26 0 794 180 92 87 chr3 53472273 53472479 -164564679 - MER58A DNA MER1_type -16 208 2 230 331 74 24 chr3 53472511 53472849 -164564309 - L1MC/D LINE L1 -915 5231 4877 250 246 333 36 chr3 53473009 53473204 -164563954 + L2 LINE L2 2966 3218 -95 198 240 320 40 chr3 53474199 53474299 -164562859 + MIR SINE MIR 21 148 -114 277 288 34 1 chr3 53476299 53476399 -164560759 + MIR SINE MIR 19 120 -88 251 317 67 10 chr3 53476850 53476954 -164560204 - MIR SINE MIR -90 172 63 210 160 0 0 chr3 53477164 53477214 -164559944 + GA-rich Low_complexity Low_complexity 1 50 0 264 212 61 0 chr3 53477218 53477284 -164559874 - L1ME3A LINE L1 -12 6158 6089 417 245 49 0 chr3 53478932 53479034 -164558124 + Charlie8 DNA MER1_type 76 182 -2235 209 199 0 6 chr3 53479431 53479491 -164557667 - MIR SINE MIR -64 144 107 2497 58 7 0 chr3 53479659 53479967 -164557191 + AluY SINE Alu 1 310 -1 2193 113 0 0 chr3 53481789 53482092 -164555066 + AluSg SINE Alu 1 303 0 305 309 191 0 chr3 53482752 53482878 -164554280 - MER5A DNA MER1_type -6 183 34 332 279 43 116 chr3 53483024 53483257 -164553901 - L2 LINE L2 -1 3271 3056 2116 225 94 17 chr3 53483487 53483572 -164553586 + MLT1E LTR MaLR 19 96 -497 2212 131 3 3 chr3 53483572 53483877 -164553281 - AluSx SINE Alu -7 305 1 2116 225 94 17 chr3 53483877 53484325 -164552833 + MLT1E LTR MaLR 96 593 0 1865 159 121 13 chr3 53484560 53484950 -164552208 + MSTB1 LTR MaLR 1 432 0 883 283 118 18 chr3 53485318 53485707 -164551451 + MLT1J LTR MaLR 84 511 0 234 275 99 33 chr3 53485766 53485857 -164551301 - L2 LINE L2 -2 3270 3174 2615 71 0 0 chr3 53485941 53486250 -164550908 + AluY SINE Alu 1 309 -2 425 240 115 0 chr3 53486251 53486355 -164550803 + MLT1I LTR MaLR 294 409 0 282 298 88 17 chr3 53486846 53487027 -164550131 + L2 LINE L2 2640 2833 -481 458 296 69 57 chr3 53488763 53489199 -164547959 - L2 LINE L2 -1 3312 2872 540 254 112 19 chr3 53490058 53490263 -164546895 + MLT1H1 LTR MaLR 327 550 -5 190 293 17 0 chr3 53492244 53492302 -164544856 - L2 LINE L2 -9 3263 3205 272 314 103 25 chr3 53493440 53493682 -164543476 + L2 LINE L2 563 823 -2491 2393 100 3 0 chr3 53493725 53494026 -164543132 - AluSx SINE Alu -10 302 1 840 194 46 0 chr3 53494072 53494247 -164542911 + MER58A DNA MER1_type 42 224 0 388 360 66 11 chr3 53494357 53494643 -164542515 + L2 LINE L2 1131 1432 -1882 2213 117 0 3 chr3 53494657 53494947 -164542211 - AluSg SINE Alu -21 289 1 659 288 107 34 chr3 53495091 53495445 -164541713 - LTR16C LTR ERVL -2 489 110 369 359 125 52 chr3 53495555 53496590 -164540568 + L2 LINE L2 1648 2757 -557 414 337 192 14 chr3 53496696 53496993 -164540165 + L2 LINE L2 2921 3270 -2 1213 276 80 3 chr3 53547085 53547437 -164489721 + LTR16C LTR ERVL 113 491 0 357 234 75 89 chr3 53548583 53548927 -164488231 - MLT1H LTR MaLR 0 549 69 180 396 0 0 chr3 53549016 53549064 -164488094 + L2 LINE L2 3206 3253 -19 213 39 0 0 chr3 53549064 53549090 -164488068 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 394 267 78 9 chr3 53549255 53549371 -164487787 + MIR SINE MIR 139 262 0 216 300 11 22 chr3 53550158 53550248 -164486910 + MIR SINE MIR 58 146 -116 267 329 0 12 chr3 53550264 53550349 -164486809 - L2 LINE L2 -5 3308 3225 568 243 52 35 chr3 53550352 53550525 -164486633 - MLT1J LTR MaLR -2 509 334 5882 118 22 0 chr3 53550554 53551716 -164485442 - L1PA16 LINE L1 -9 6157 4978 1190 182 6 10 chr3 53551729 53551990 -164485168 - L1P LINE L1 -1117 5029 4770 20768 124 24 2 chr3 53551993 53555221 -164481937 + L1PA8A LINE L1 2106 5403 -743 4227 74 25 5 chr3 53555332 53555900 -164481258 + L1PA8A LINE L1 5553 6131 0 384 234 21 0 chr3 53555968 53556087 -164481071 - L1M4 LINE L1 -5081 1553 1344 * 2060 243 31 55 chr3 53556063 53556877 -164480281 - L1MEc LINE L1 -3222 3422 2629 3874 287 78 28 chr3 53557333 53559257 -164477901 - L1MEc LINE L1 -4337 2059 39 983 170 6 0 chr3 53559928 53560099 -164477059 + FRAM SINE Alu 1 163 -13 421 301 82 80 chr3 53560199 53560453 -164476705 + L2 LINE L2 2872 3129 -184 581 234 99 123 chr3 53560453 53560988 -164476170 + LTR33A LTR ERVL 2 523 0 421 301 82 80 chr3 53560988 53561171 -164475987 + L2 LINE L2 3129 3310 -3 1628 208 211 20 chr3 53562246 53562910 -164474248 + LTR50 LTR ERVL 2 792 -3 181 290 131 19 chr3 53563527 53563634 -164473524 - L2 LINE L2 -17 3255 3137 209 33 33 0 chr3 53563652 53563682 -164473476 + (TCTA)n Simple_repeat Simple_repeat 1 31 0 459 92 0 0 chr3 53563756 53563821 -164473337 + (TGGA)n Simple_repeat Simple_repeat 4 68 0 401 259 214 36 chr3 53564436 53564768 -164472390 - LTR16A LTR ERVL -46 404 14 679 214 48 91 chr3 53565497 53565707 -164471451 - MIR SINE MIR -15 247 47 254 212 101 50 chr3 53566370 53566469 -164470689 - LTR33 LTR ERVL -246 275 172 587 189 41 9 chr3 53566472 53566630 -164470528 - MLT1H LTR MaLR -229 202 1 266 279 0 0 chr3 53566709 53566788 -164470370 - MIR SINE MIR -168 94 16 657 268 88 12 chr3 53568191 53568600 -164468558 + LTR33 LTR ERVL 20 521 0 674 111 0 30 chr3 53568814 53568913 -164468245 + AluJ/FLAM SINE Alu 2 97 -215 238 274 16 0 chr3 53569391 53569453 -164467705 - L2 LINE L2 -279 2993 2931 623 240 52 16 chr3 53569579 53569771 -164467387 - LTR16A1 LTR ERVL -2 455 257 408 172 0 46 chr3 53569798 53569890 -164467268 + AluJ/FLAM SINE Alu 1 67 -235 202 212 0 30 chr3 53571712 53571778 -164465380 + GA-rich Low_complexity Low_complexity 1 64 0 297 326 31 39 chr3 53571802 53571931 -164465227 - MIR3 SINE MIR -32 176 49 418 218 70 3 chr3 53573012 53573137 -164464021 - MIR SINE MIR -52 156 24 200 222 205 51 chr3 53573748 53573865 -164463293 - L3 LINE CR1 -274 1303 1169 932 258 57 65 chr3 53575009 53575536 -164461622 - LTR33A LTR ERVL 0 523 1 266 376 26 0 chr3 53575547 53575664 -164461494 + L3 LINE CR1 1092 1211 -366 273 209 70 35 chr3 53575665 53575751 -164461407 + L3 LINE CR1 1347 1435 -142 258 247 41 41 chr3 53575922 53576019 -164461139 - MLT1H LTR MaLR -21 528 432 376 237 28 83 chr3 53576149 53576296 -164460862 - MLT1H LTR MaLR -196 235 82 601 307 80 8 chr3 53576400 53576638 -164460520 + MIR SINE MIR 2 256 -6 382 337 60 5 chr3 53577285 53577469 -164459689 + MIR SINE MIR 5 198 -64 449 258 137 57 chr3 53577731 53577979 -164459179 - LTR16C LTR ERVL 0 491 224 194 237 153 76 chr3 53578503 53578621 -164458537 + MIR SINE MIR 8 135 -73 345 308 88 25 chr3 53579921 53580080 -164457078 - L1ME4a LINE L1 -6 6115 5947 320 226 92 152 chr3 53580080 53580134 -164457024 - MLT1K LTR MaLR -2 586 530 2293 160 8 25 chr3 53580134 53580528 -164456630 + MLT1B LTR MaLR 4 390 0 320 226 92 152 chr3 53580528 53580756 -164456402 - MLT1K LTR MaLR -58 530 321 346 301 0 0 chr3 53580929 53581022 -164456136 - MIR SINE MIR -89 173 81 1364 143 49 19 chr3 53581091 53581382 -164455776 - AluJb SINE Alu 0 312 40 523 212 9 0 chr3 53582267 53582380 -164454778 + MER96B DNA MER1_type? 4 117 -300 2391 117 24 56 chr3 53582542 53582951 -164454207 - MLT2D LTR ERVL 0 414 19 224 378 44 0 chr3 53583043 53583133 -164454025 + L2 LINE L2 3168 3261 -11 750 269 76 25 chr3 53584572 53584888 -164452270 + L1MCc LINE L1 25 356 -6067 2225 67 6 25 chr3 53584911 53585225 -164451933 + AluY SINE Alu 1 308 -3 1949 138 16 19 chr3 53585227 53585545 -164451613 + MLT1A1 LTR MaLR 49 365 0 432 287 30 36 chr3 53585545 53585712 -164451446 + L1MCc LINE L1 353 518 -5905 643 246 66 62 chr3 53585935 53586191 -164450967 + L1MCc LINE L1 825 1081 -5342 * 1480 251 71 2 chr3 53586183 53586594 -164450564 + L1ME1 LINE L1 5727 6165 -1 352 262 131 61 chr3 53586875 53587089 -164450069 - MLT1K LTR MaLR -192 396 168 314 359 157 36 chr3 53587229 53587510 -164449648 - L2 LINE L2 -5 3267 2953 560 314 131 46 chr3 53587730 53588335 -164448823 - L2 LINE L2 -2127 1187 532 312 255 0 85 chr3 53588674 53588690 -164448468 - L1MC4 LINE L1 -1333 6709 6693 1982 84 0 15 chr3 53588690 53588953 -164448205 + AluSx SINE Alu 35 293 -19 312 255 0 85 chr3 53588953 53589042 -164448116 - L1MC4 LINE L1 -1349 6693 6613 409 233 26 0 chr3 53589090 53589206 -164447952 - MER113 DNA MER1_type? -402 119 1 203 322 0 0 chr3 53589208 53589267 -164447891 - MIR SINE MIR -66 196 138 477 319 54 0 chr3 53591035 53591201 -164445957 + MIR SINE MIR 9 183 -79 412 280 171 18 chr3 53591260 53591653 -164445505 + LTR33 LTR ERVL 3 455 -66 194 194 15 0 chr3 53592455 53592522 -164444636 + (CA)n Simple_repeat Simple_repeat 1 68 0 222 37 0 0 chr3 53592874 53592901 -164444257 + (T)n Simple_repeat Simple_repeat 1 27 0 1841 261 107 16 chr3 53593859 53594614 -164442544 - HAL1 LINE L1 0 2507 1684 6847 89 15 8 chr3 53594735 53595692 -164441466 + L1MA2 LINE L1 5342 6304 0 381 232 24 32 chr3 53595728 53595853 -164441305 - HAL1 LINE L1 -1137 1370 1247 793 311 150 31 chr3 53596046 53596692 -164440466 - HAL1 LINE L1 -1568 939 217 387 262 166 0 chr3 53596822 53596967 -164440191 - MIR SINE MIR -87 175 7 801 209 11 28 chr3 53597238 53597415 -164439743 + MER5B DNA MER1_type 1 174 -4 234 266 419 0 chr3 53597427 53597502 -164439656 - MER5A DNA MER1_type 0 189 147 2284 151 16 14 chr3 53597502 53597866 -164439292 + MLT1A1 LTR MaLR 1 365 0 234 266 419 0 chr3 53597866 53597914 -164439244 - MER5A DNA MER1_type -42 147 14 807 258 172 29 chr3 53599782 53600341 -164436817 + L1ME4a LINE L1 5483 6121 0 22 0 0 0 chr3 53600602 53600624 -164436534 + GC_rich Low_complexity Low_complexity 1 22 0 491 272 141 15 chr3 53600641 53600847 -164436311 + MIR SINE MIR 9 240 -22 298 275 25 0 chr3 53600973 53601053 -164436105 + (CG)n Simple_repeat Simple_repeat 2 83 0 394 87 116 0 chr3 53601894 53601963 -164435195 + MADE1 DNA Mariner 4 80 0 535 291 106 0 chr3 53602625 53602814 -164434344 - MIR SINE MIR 0 262 54 336 284 138 0 chr3 53603502 53603618 -164433540 - MIR SINE MIR -77 185 54 186 278 56 14 chr3 53604199 53604271 -164432887 - L2 LINE L2 -3 3310 3236 279 0 0 0 chr3 53604905 53604936 -164432222 + (A)n Simple_repeat Simple_repeat 1 31 0 297 252 65 41 chr3 53605529 53605652 -164431506 + MLT1J LTR MaLR 84 209 -302 682 266 34 34 chr3 53605652 53605759 -164431399 - LTR16C LTR ERVL 0 491 382 858 258 115 48 chr3 53605759 53606194 -164430964 - LTR16B LTR ERVL 0 464 1 682 266 34 34 chr3 53606194 53606293 -164430865 - LTR16C LTR ERVL -108 383 285 2144 85 0 3 chr3 53606440 53606751 -164430407 - AluSq SINE Alu 0 310 1 303 294 39 10 chr3 53607097 53607199 -164429959 + L1ME4a LINE L1 5964 6068 -53 24 53 0 0 chr3 53607265 53607303 -164429855 + AT_rich Low_complexity Low_complexity 1 38 0 290 269 0 5 chr3 53607329 53607405 -164429753 - MLT1A1 LTR MaLR 0 390 291 189 0 0 0 chr3 53607405 53607426 -164429732 + (T)n Simple_repeat Simple_repeat 1 21 0 257 236 38 75 chr3 53607427 53607533 -164429625 - MLT1J2 LTR MaLR -70 380 279 * 640 248 37 8 chr3 53607518 53607692 -164429466 - MLT1J1 LTR MaLR -287 159 1 1860 186 0 7 chr3 53607965 53608272 -164428886 + MLT1A1 LTR MaLR 1 305 -60 1950 105 4 0 chr3 53608272 53608538 -164428620 + AluY SINE Alu 1 267 -44 651 245 32 7 chr3 53608693 53608848 -164428310 + MLT1J1 LTR MaLR 1 159 -287 544 236 29 52 chr3 53608852 53609026 -164428132 + MLT1J2 LTR MaLR 279 448 -2 538 245 80 18 chr3 53609423 53609586 -164427572 - MIR SINE MIR -61 201 29 367 235 279 0 chr3 53610296 53610432 -164426726 - MIR SINE MIR 0 262 89 2001 164 162 7 chr3 53610432 53610864 -164426294 + MLT1D LTR MaLR 1 499 -6 600 288 136 22 chr3 53611177 53611813 -164425345 + L1M3 LINE L1 4860 5584 -596 213 39 0 0 chr3 53612563 53612589 -164424569 + (A)n Simple_repeat Simple_repeat 1 26 0 220 238 206 0 chr3 53612680 53612743 -164424415 + L2 LINE L2 3238 3313 0 430 253 89 20 chr3 53612846 53612992 -164424166 - LTR33A LTR ERVL -158 365 210 388 281 0 10 chr3 53613253 53613349 -164423809 - MIR SINE MIR -102 160 66 1047 249 129 32 chr3 53614103 53614568 -164422590 - LTR33A LTR ERVL -6 517 8 262 308 125 35 chr3 53615062 53615283 -164421875 - MIR SINE MIR -12 250 19 423 227 53 53 chr3 53615499 53615631 -164421527 - LTR16C LTR ERVL 0 491 360 1077 251 82 22 chr3 53615823 53616225 -164420933 + LTR16A LTR ERVL 25 450 0 1941 133 0 31 chr3 53617128 53617450 -164419708 + AluSx SINE Alu 1 312 0 21 0 0 0 chr3 53618967 53618988 -164418170 + AT_rich Low_complexity Low_complexity 1 21 0 310 233 56 0 chr3 53619108 53619198 -164417960 + MIR SINE MIR 128 222 -40 532 293 83 70 chr3 53620320 53620804 -164416354 - MLT1J LTR MaLR -19 492 3 343 224 71 10 chr3 53620805 53620903 -164416255 - MIR SINE MIR -103 159 56 1989 153 125 13 chr3 53621244 53621629 -164415529 + MSTA LTR MaLR 1 428 0 1651 174 13 10 chr3 53621914 53622219 -164414939 - AluJo SINE Alu -6 306 1 258 140 0 70 chr3 53622820 53622877 -164414281 - HsTC2 DNA Tc2 -1845 53 1 362 292 104 75 chr3 53622978 53623283 -164413875 + L1ME4a LINE L1 5478 5806 -315 1821 160 24 0 chr3 53623283 53623570 -164413588 - AluSx SINE Alu -18 294 1 362 292 104 75 chr3 53623570 53623785 -164413373 + L1ME4a LINE L1 5806 6013 -108 1804 196 28 6 chr3 53624169 53624526 -164412632 + MLT1A1 LTR MaLR 1 365 0 416 264 129 22 chr3 53624751 53624929 -164412229 + LTR50 LTR ERVL 3 199 -596 510 229 49 14 chr3 53625101 53625245 -164411913 + LTR33A LTR ERVL 375 523 0 477 0 0 0 chr3 53625913 53625966 -164411192 + (CA)n Simple_repeat Simple_repeat 1 53 0 186 250 0 0 chr3 53626196 53626236 -164410922 + L2 LINE L2 3269 3308 -5 2544 253 112 42 chr3 53627092 53628491 -164408667 - HAL1 LINE L1 -39 2468 971 247 245 0 0 chr3 53629151 53629200 -164407958 - HAL1 LINE L1 -2422 85 37 1560 162 28 33 chr3 53629209 53629472 -164407686 + L1M4 LINE L1 5221 5472 -706 297 0 0 0 chr3 53629472 53629505 -164407653 + (CA)n Simple_repeat Simple_repeat 2 34 0 1560 162 28 33 chr3 53629505 53629597 -164407561 + L1M4 LINE L1 5472 5563 -615 382 288 39 128 chr3 53629661 53630019 -164407139 - L2 LINE L2 -1 3271 2946 1383 177 0 5 chr3 53630044 53630264 -164406894 + AluJb SINE Alu 84 302 -10 301 355 147 7 chr3 53630277 53630691 -164406467 - L2 LINE L2 -385 2929 2458 190 211 0 35 chr3 53631892 53631949 -164405209 + MIR SINE MIR 156 210 -52 3361 195 70 38 chr3 53632181 53632954 -164404204 - MER21B LTR ERV1 -52 811 14 448 215 33 66 chr3 53633065 53633186 -164403972 - MLT1L LTR MaLR -151 464 348 265 241 13 13 chr3 53633347 53633426 -164403732 + (TA)n Simple_repeat Simple_repeat 1 79 0 29 94 0 0 chr3 53633458 53633543 -164403615 + AT_rich Low_complexity Low_complexity 1 85 0 638 228 59 31 chr3 53634151 53634405 -164402753 + L1MC4 LINE L1 7687 7947 -95 306 0 0 0 chr3 53634553 53634587 -164402571 + (CA)n Simple_repeat Simple_repeat 1 34 0 291 282 0 10 chr3 53634587 53634690 -164402468 + L1MC4 LINE L1 7940 8041 -1 641 307 56 14 chr3 53635543 53635898 -164401260 - LTR33 LTR ERVL -151 370 1 341 151 41 41 chr3 53635899 53635972 -164401186 + MIR SINE MIR 120 192 -70 4959 165 60 9 chr3 53636125 53637522 -164399636 + L1MB7 LINE L1 4707 6184 0 574 276 124 22 chr3 53637515 53637742 -164399416 + L1MEd LINE L1 945 1147 -1343 * 2441 61 10 3 chr3 53637742 53638039 -164399119 + AluY SINE Alu 1 299 -12 574 276 124 22 chr3 53638039 53638332 -164398826 + L1MEd LINE L1 1147 1600 -890 186 269 0 0 chr3 53638661 53638713 -164398445 + L2 LINE L2 3262 3313 0 231 318 0 0 chr3 53639053 53639119 -164398039 + GA-rich Low_complexity Low_complexity 2 67 0 225 330 92 0 chr3 53639199 53639308 -164397850 + L2 LINE L2 2941 3059 -213 360 190 0 0 chr3 53639315 53639394 -164397764 + (CA)n Simple_repeat Simple_repeat 1 79 0 2464 61 0 3 chr3 53639481 53639777 -164397381 + AluY SINE Alu 1 295 -16 191 331 177 15 chr3 53639784 53639914 -164397244 + L2 LINE L2 3117 3267 -5 183 42 0 0 chr3 53640175 53640199 -164396959 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2251 126 0 0 chr3 53640761 53641071 -164396087 + AluSx SINE Alu 1 310 -2 2340 142 30 5 chr3 53641555 53641957 -164395201 - L1MB4 LINE L1 0 6180 5769 32292 100 7 13 chr3 53641958 53647536 -164389622 - L1PA7 LINE L1 -5 6149 606 * 39234 57 11 12 chr3 53647531 53654034 -164383124 - L1PA4 LINE L1 -3 6467 1 1291 138 18 9 chr3 53654036 53654253 -164382905 - L1MB4 LINE L1 -394 5786 5568 257 129 40 66 chr3 53654438 53654525 -164382633 - L1M3 LINE L1 -568 5612 5523 384 260 188 20 chr3 53656083 53656469 -164380689 - LTR16C LTR ERVL 0 491 5 190 71 0 0 chr3 53656474 53656502 -164380656 + MIR SINE MIR 70 97 -165 301 266 47 39 chr3 53657071 53657199 -164379959 - LTR16C LTR ERVL -124 367 239 2486 87 0 0 chr3 53657724 53658035 -164379123 + AluY SINE Alu 1 311 0 1247 242 78 55 chr3 53658077 53658553 -164378605 - MLT1J LTR MaLR 0 511 25 708 275 132 36 chr3 53658735 53659183 -164377975 + LTR16C LTR ERVL 1 491 0 182 395 0 23 chr3 53659191 53659277 -164377881 - MIR SINE MIR -105 103 20 297 264 192 16 chr3 53660157 53660282 -164376876 - MIR SINE MIR -62 146 1 590 206 28 28 chr3 53661702 53661843 -164375315 - MLT1H LTR MaLR -408 141 1 1867 182 49 17 chr3 53661946 53662404 -164374754 + L1MEc LINE L1 2063 2479 -3947 780 287 79 38 chr3 53663146 53663540 -164373618 - LTR16C LTR ERVL -18 473 64 822 173 93 110 chr3 53664334 53664725 -164372433 - LTR16A1 LTR ERVL -22 435 2 275 341 63 8 chr3 53666789 53666915 -164370243 - Charlie8 DNA MER1_type -2259 158 26 777 214 60 0 chr3 53667811 53667979 -164369179 + MER45A DNA AcHobo 1 178 0 214 296 127 0 chr3 53668041 53668112 -164369046 + MIR SINE MIR 107 186 -76 355 294 145 9 chr3 53668315 53668529 -164368629 - MIR SINE MIR 0 262 20 273 208 0 0 chr3 53668686 53668734 -164368424 + MER94 DNA DNA 4 51 -83 458 208 14 42 chr3 53669347 53669491 -164367667 - L1MC4 LINE L1 -1 8041 7902 531 0 0 0 chr3 53669495 53669554 -164367604 + (TG)n Simple_repeat Simple_repeat 2 60 0 392 300 82 37 chr3 53669568 53669873 -164367285 - LTR16B LTR ERVL -46 404 37 1187 232 24 72 chr3 53670351 53670609 -164366549 + LTR16C LTR ERVL 98 330 -161 1488 150 11 27 chr3 53670609 53670869 -164366289 + AluJo SINE Alu 1 256 -56 1187 232 24 72 chr3 53670869 53671024 -164366134 + LTR16C LTR ERVL 330 491 0 345 264 47 9 chr3 53671328 53671434 -164365724 - L2 LINE L2 -3 3310 3201 1966 94 4 11 chr3 53671725 53672011 -164365147 - AluSp SINE Alu 0 313 44 412 285 73 22 chr3 53672368 53672505 -164364653 + MIR SINE MIR 9 152 -110 245 310 60 0 chr3 53672541 53672657 -164364501 - L2 LINE L2 -756 2558 2436 * 421 221 0 39 chr3 53672634 53672761 -164364397 - MIR SINE MIR -1 261 140 498 198 72 9 chr3 53673061 53673172 -164363986 + LTR16C LTR ERVL 373 490 -1 231 245 265 0 chr3 53673173 53673275 -164363883 - MIR SINE MIR -116 146 18 784 124 142 30 chr3 53673284 53673453 -164363705 - MER5A DNA MER1_type 0 189 2 198 308 66 22 chr3 53673603 53673694 -164363464 - L2 LINE L2 -9 3304 3210 1468 241 50 3 chr3 53674946 53675286 -164361872 + LTR16C LTR ERVL 136 491 0 1475 268 148 28 chr3 53677136 53678021 -164359137 - HAL1 LINE L1 -546 1961 971 411 264 129 22 chr3 53678962 53679140 -164358018 + LTR50 LTR ERVL 3 199 -596 520 229 49 14 chr3 53679312 53679456 -164357702 + LTR33A LTR ERVL 375 523 0 477 0 0 0 chr3 53680124 53680177 -164356981 + (CA)n Simple_repeat Simple_repeat 1 53 0 195 226 194 0 chr3 53680385 53680447 -164356711 + L2 LINE L2 3235 3308 -5 729 243 56 56 chr3 53681303 53681640 -164355518 - HAL1 LINE L1 -39 2468 2132 2105 121 27 0 chr3 53684141 53684439 -164352719 - AluSx SINE Alu -6 306 1 348 155 42 28 chr3 53684721 53684792 -164352366 + MER5A DNA MER1_type 35 106 -83 385 255 28 83 chr3 53685077 53685293 -164351865 + HAL1 LINE L1 2290 2493 -14 216 0 0 0 chr3 53685376 53685400 -164351758 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 29 0 0 0 chr3 53685585 53685614 -164351544 + AT_rich Low_complexity Low_complexity 1 29 0 377 287 123 58 chr3 53685828 53686138 -164351020 - MLT1H LTR MaLR -211 338 9 1157 225 0 0 chr3 53686151 53686360 -164350798 + MER58A DNA MER1_type 1 209 -15 225 281 6 105 chr3 53686397 53686568 -164350590 - L1MC4a LINE L1 -1849 5959 5806 246 105 0 0 chr3 53686663 53686701 -164350457 + (CA)n Simple_repeat Simple_repeat 1 38 0 4060 252 27 23 chr3 53688314 53688742 -164348416 - L1MC4a LINE L1 -1778 4368 3943 2399 79 0 0 chr3 53688742 53689034 -164348124 + AluY SINE Alu 1 292 -19 4060 252 27 23 chr3 53689034 53689831 -164347327 - L1MC4a LINE L1 -2203 3943 3138 383 239 94 12 chr3 53689976 53690163 -164346995 - L1P5 LINE L1 -695 5461 5255 789 304 68 28 chr3 53690407 53691023 -164346135 - L1M4 LINE L1 -1191 4955 4315 4129 92 47 10 chr3 53691144 53691719 -164345439 + Tigger1 DNA MER2_type 1823 2418 0 1950 203 207 29 chr3 53691717 53692244 -164344914 - MLT1E1 LTR MaLR 0 654 34 * 1939 145 7 7 chr3 53692475 53692764 -164344394 - AluSx SINE Alu -23 289 1 1843 139 37 0 chr3 53693292 53693588 -164343570 - AluSx SINE Alu 0 306 1 256 325 108 13 chr3 53693686 53693843 -164343315 - HAL1 LINE L1 -738 1769 1598 193 347 53 0 chr3 53694775 53694850 -164342308 + L2 LINE L2 3184 3262 -10 773 232 71 12 chr3 53695119 53695287 -164341871 + MER45A DNA AcHobo 1 178 0 1038 144 104 25 chr3 53695966 53696167 -164340991 - L1MB4 LINE L1 -340 5840 5624 4432 141 60 42 chr3 53696499 53697351 -164339807 - L1MB4 LINE L1 -2 6178 5312 * 6401 131 33 5 chr3 53697345 53698728 -164338430 - L1MA7 LINE L1 -23 6472 5052 3816 60 10 4 chr3 53698731 53699232 -164337926 - L1MA1 LINE L1 -191 6111 5608 11483 211 57 44 chr3 53699237 53699921 -164337237 - L1MA7 LINE L1 -1302 5048 4374 7222 73 22 0 chr3 53699921 53701149 -164336009 - L1PA10 LINE L1 0 6168 4936 11483 211 57 44 chr3 53701149 53701229 -164335929 - L1MA7 LINE L1 -1976 4374 4297 2475 140 15 82 chr3 53701229 53701692 -164335466 + MSTB1 LTR MaLR 1 432 0 11483 211 57 44 chr3 53701692 53702048 -164335110 - L1MA7 LINE L1 -2053 4297 3947 1990 116 0 50 chr3 53702048 53702366 -164334792 - AluSc SINE Alu -7 302 1 11483 211 57 44 chr3 53702366 53704154 -164333004 - L1MA7 LINE L1 -2403 3947 2388 1855 111 4 21 chr3 53704154 53704433 -164332725 - L1PA13 LINE L1 -2 6161 5888 11483 211 57 44 chr3 53704433 53706231 -164330927 - L1MA7 LINE L1 -3962 2388 615 856 241 46 19 chr3 53706232 53706493 -164330665 - L1M4 LINE L1 -816 5330 5063 6186 240 63 34 chr3 53706590 53707581 -164329577 + L1MD2 LINE L1 2260 3220 -2926 1636 151 85 0 chr3 53707581 53707877 -164329281 + AluJo SINE Alu 1 319 0 6186 240 63 34 chr3 53707877 53708715 -164328443 + L1MD2 LINE L1 3220 4159 -1987 1539 18 0 0 chr3 53708715 53708884 -164328274 + AluY SINE Alu 143 311 0 6186 240 63 34 chr3 53708884 53709052 -164328106 + L1MD2 LINE L1 4159 4320 -1826 4990 174 30 63 chr3 53709042 53710595 -164326563 + L1MD2 LINE L1 4819 6339 -20 * 21 0 0 0 chr3 53710634 53710655 -164326503 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr3 53715171 53715200 -164321958 + GC_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 53715318 53715340 -164321818 + GC_rich Low_complexity Low_complexity 1 22 0 33 0 0 0 chr3 53716457 53716490 -164320668 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr3 53717683 53717706 -164319452 + AT_rich Low_complexity Low_complexity 1 23 0 261 0 0 0 chr3 53719455 53719484 -164317674 + (T)n Simple_repeat Simple_repeat 1 29 0 23 0 0 0 chr3 53719764 53719787 -164317371 + AT_rich Low_complexity Low_complexity 1 23 0 261 0 0 0 chr3 53720168 53720197 -164316961 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1839 125 43 46 chr3 53722766 53723069 -164314089 - AluSx SINE Alu -10 302 1 810 82 44 19 chr3 53724892 53725065 -164312093 + CT-rich Low_complexity Low_complexity 1 177 0 949 191 10 26 chr3 53725245 53725439 -164311719 + MER3 DNA MER1_type 19 209 0 2283 93 0 3 chr3 53725627 53725918 -164311240 - AluSc SINE Alu -19 290 1 202 330 92 9 chr3 53726872 53726981 -164310177 + MER5B DNA MER1_type 27 144 -34 1736 166 10 10 chr3 53726985 53727293 -164309865 - AluJb SINE Alu 0 312 5 583 251 51 8 chr3 53731231 53731431 -164305727 - MIR SINE MIR -48 214 5 877 238 58 14 chr3 53732110 53732333 -164304825 + MIR SINE MIR 13 245 -17 24 0 0 0 chr3 53734315 53734339 -164302819 + AT_rich Low_complexity Low_complexity 1 24 0 332 200 12 0 chr3 53737434 53737514 -164299644 + CT-rich Low_complexity Low_complexity 4 84 0 22 0 0 0 chr3 53738788 53738810 -164298348 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 53739687 53739709 -164297449 + AT_rich Low_complexity Low_complexity 1 22 0 316 186 0 57 chr3 53742767 53742837 -164294321 + MER116 DNA Mariner 1 66 -14 812 300 127 33 chr3 53742870 53743277 -164293881 + L2 LINE L2 2705 3173 -140 705 168 8 30 chr3 53743277 53743408 -164293750 - FLAM_A SINE Alu -4 129 2 812 300 127 33 chr3 53743408 53743559 -164293599 + L2 LINE L2 3173 3308 -5 610 185 89 34 chr3 53744119 53744265 -164292893 - MIR SINE MIR -49 213 60 188 341 119 23 chr3 53744654 53744830 -164292328 + MIR SINE MIR 64 256 -6 221 328 26 26 chr3 53746503 53746619 -164290539 - L3b LINE CR1 -278 1305 1190 1185 156 211 4 chr3 53747415 53747652 -164289506 - AluJb SINE Alu -26 286 1 255 215 50 107 chr3 53747652 53747773 -164289385 - MER5A DNA MER1_type -40 149 36 205 307 13 13 chr3 53748088 53748163 -164288995 + L2 LINE L2 2978 3052 -220 222 204 108 65 chr3 53748197 53748290 -164288868 + L2 LINE L2 3200 3296 -17 338 306 65 0 chr3 53748457 53748581 -164288577 + L2 LINE L2 2354 2485 -829 231 88 0 0 chr3 53749030 53749064 -164288094 + (TG)n Simple_repeat Simple_repeat 1 34 0 304 346 37 9 chr3 53749679 53749786 -164287372 + L2 LINE L2 3125 3234 -38 393 102 0 0 chr3 53749802 53749861 -164287297 + (TGGA)n Simple_repeat Simple_repeat 1 59 0 186 43 0 0 chr3 53749863 53749886 -164287272 + (GGAA)n Simple_repeat Simple_repeat 3 25 0 261 0 0 0 chr3 53750051 53750080 -164287078 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1169 166 57 106 chr3 53750082 53750235 -164286923 - AluSx SINE Alu -15 287 155 216 0 0 0 chr3 53750235 53750259 -164286899 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1169 166 57 106 chr3 53750259 53750406 -164286752 - AluSx SINE Alu -147 155 2 1495 142 0 0 chr3 53750409 53750635 -164286523 - AluSg/x SINE Alu -9 303 78 1548 154 71 8 chr3 53751394 53751685 -164285473 + AluJb SINE Alu 1 308 0 784 285 111 24 chr3 53752029 53752454 -164284704 - L1ME4a LINE L1 -1 6120 5659 286 241 121 0 chr3 53752473 53752556 -164284602 - L1ME3 LINE L1 0 6162 6070 339 315 69 27 chr3 53752628 53752817 -164284341 - MIR SINE MIR -37 225 33 209 338 120 8 chr3 53753261 53753394 -164283764 - MIR3 SINE MIR -28 180 33 319 275 60 78 chr3 53753958 53754125 -164283033 + MIR SINE MIR 99 262 0 313 252 206 9 chr3 53754371 53754478 -164282680 + L2 LINE L2 3143 3270 -2 1597 196 0 3 chr3 53754633 53754944 -164282214 - AluJb SINE Alu -2 310 1 655 294 162 22 chr3 53755373 53756102 -164281056 + L1MC/D LINE L1 3869 4703 -1443 622 278 69 56 chr3 53756290 53756687 -164280471 + L1MC/D LINE L1 4914 5304 -1101 2257 93 0 7 chr3 53756687 53756997 -164280161 + AluSq SINE Alu 3 310 -3 622 278 69 56 chr3 53756997 53757456 -164279702 + L1MC/D LINE L1 5304 5798 -607 302 243 56 19 chr3 53757793 53757900 -164279258 + L1MC4 LINE L1 7916 8026 -16 325 239 34 29 chr3 53758121 53758244 -164278914 - MLT1L LTR MaLR -304 284 160 233 173 62 62 chr3 53758353 53758434 -164278724 - MLT1L LTR MaLR -532 83 3 411 316 60 28 chr3 53758503 53758753 -164278405 - L1ME LINE L1 -580 5582 5325 203 333 30 0 chr3 53758988 53759054 -164278104 + MIR3 SINE MIR 129 196 -12 2140 67 0 67 chr3 53760640 53760956 -164276202 + AluY SINE Alu 1 295 -16 22 0 0 0 chr3 53761413 53761435 -164275723 + AT_rich Low_complexity Low_complexity 1 22 0 255 158 341 0 chr3 53764811 53764893 -164272265 + MER117 DNA MER1_type 51 160 -37 244 175 21 113 chr3 53766160 53766257 -164270901 + L2 LINE L2 3223 3310 -3 200 270 14 68 chr3 53766633 53766707 -164270451 - MIR3 SINE MIR -21 187 118 184 263 158 13 chr3 53768681 53768757 -164268401 - MIR SINE MIR -129 133 47 481 304 57 44 chr3 53768879 53769106 -164268052 + MIR SINE MIR 13 242 -20 312 225 14 14 chr3 53770901 53770972 -164266186 - MER117 DNA MER1_type -112 85 15 * 377 235 67 34 chr3 53770959 53771078 -164266080 + MER117 DNA MER1_type 74 196 -1 24 32 0 0 chr3 53771125 53771156 -164266002 + AT_rich Low_complexity Low_complexity 1 31 0 1752 149 0 14 chr3 53771250 53771539 -164265619 + AluJb SINE Alu 5 289 -23 196 297 27 14 chr3 53773339 53773413 -164263745 + L2 LINE L2 2507 2581 -733 203 200 22 0 chr3 53776317 53776362 -164260796 + A-rich Low_complexity Low_complexity 4 49 0 396 200 0 0 chr3 53777102 53777182 -164259976 + L1MA8 LINE L1 6211 6290 -1 997 236 95 71 chr3 53779763 53780300 -164256858 - MER34C LTR ERV1 0 585 36 317 265 10 49 chr3 53782253 53782355 -164254803 + MER5A DNA MER1_type 17 114 -75 655 269 18 0 chr3 53782514 53782681 -164254477 - MER91A DNA MER1_type -26 170 1 230 269 64 0 chr3 53782805 53782883 -164254275 - MIR SINE MIR -131 131 49 591 261 73 76 chr3 53783522 53783852 -164253306 - MLT1H LTR MaLR -198 351 23 186 303 0 15 chr3 53784405 53784471 -164252687 + MER5B DNA MER1_type 6 70 -108 2283 121 0 0 chr3 53784642 53784948 -164252210 - AluSx SINE Alu -6 306 1 363 299 28 14 chr3 53785286 53785430 -164251728 + MIR3 SINE MIR 20 165 -43 258 273 30 0 chr3 53785459 53785525 -164251633 + MER5A DNA MER1_type 51 118 -71 341 263 26 50 chr3 53786661 53786783 -164250375 - MIR SINE MIR -93 115 5 217 244 37 37 chr3 53786835 53786917 -164250241 + L2 LINE L2 2980 3061 -211 504 114 0 0 chr3 53787181 53787251 -164249907 + U6 snRNA snRNA 35 104 -3 324 270 43 9 chr3 53787841 53787956 -164249202 + MIR SINE MIR 123 241 -21 180 0 0 0 chr3 53788033 53788053 -164249105 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 483 199 371 29 chr3 53789253 53789525 -164247633 - LTR16C LTR ERVL 0 491 127 2370 147 59 5 chr3 53789681 53790102 -164247056 + L1MB3 LINE L1 5721 6164 -19 420 143 0 0 chr3 53790102 53790172 -164246986 + (TG)n Simple_repeat Simple_repeat 2 71 0 318 261 61 56 chr3 53790743 53790923 -164246235 - L2 LINE L2 -556 2758 2578 360 200 33 11 chr3 53792315 53792405 -164244753 - LTR33 LTR ERVL -7 514 423 298 244 8 67 chr3 53792524 53792643 -164244515 - LTR33 LTR ERVL -402 119 8 218 31 0 31 chr3 53792898 53792930 -164244228 + (GAAAA)n Simple_repeat Simple_repeat 5 35 0 269 230 103 0 chr3 53793269 53793356 -164243802 - MER5A DNA MER1_type -85 104 9 21 0 0 0 chr3 53794128 53794149 -164243009 + AT_rich Low_complexity Low_complexity 1 21 0 296 336 16 16 chr3 53794563 53794691 -164242467 - MIR SINE MIR -19 243 116 532 320 16 5 chr3 53795726 53795920 -164241238 - MIR SINE MIR -51 211 16 215 314 59 35 chr3 53796671 53796840 -164240318 - MIR SINE MIR -70 192 20 1879 154 0 13 chr3 53797717 53798015 -164239143 - AluJo SINE Alu -1 311 18 2490 66 0 0 chr3 53798450 53798739 -164238419 + AluY SINE Alu 1 289 -22 605 177 29 57 chr3 53799306 53799481 -164237677 + MER5B DNA MER1_type 9 178 0 3312 202 78 11 chr3 53801099 53802300 -164234858 - L1MD2 LINE L1 -477 6276 4972 2477 93 3 0 chr3 53802300 53802612 -164234546 + AluSp SINE Alu 1 313 0 3312 202 78 11 chr3 53802612 53802782 -164234376 - L1MD2 LINE L1 -1781 4972 4815 2260 236 51 23 chr3 53802789 53803360 -164233798 - MER21B LTR ERV1 -6 857 271 1125 129 0 0 chr3 53803424 53803611 -164233547 + AluSg/x SINE Alu 129 315 0 552 225 124 0 chr3 53803648 53803777 -164233381 - MER21B LTR ERV1 -698 165 21 319 191 0 44 chr3 53803879 53803947 -164233211 - MER21B LTR ERV1 -773 90 26 231 36 0 0 chr3 53803947 53803975 -164233183 + (TA)n Simple_repeat Simple_repeat 2 29 0 3917 217 77 40 chr3 53803975 53804805 -164232353 - L1MD2 LINE L1 -1797 4743 3848 2435 73 0 26 chr3 53804805 53805118 -164232040 + AluY SINE Alu 1 305 -6 3917 217 77 40 chr3 53805118 53805576 -164231582 - L1MD2 LINE L1 -2692 3848 3408 815 198 38 57 chr3 53805579 53805791 -164231367 - L1MD2 LINE L1 -6208 332 125 385 311 62 12 chr3 53806091 53806332 -164230826 - L1M4 LINE L1 -2190 3956 3704 228 241 194 67 chr3 53806683 53807269 -164229889 - L1M4 LINE L1 -2603 3543 2883 243 335 83 17 chr3 53807282 53807742 -164229416 - L1M4 LINE L1 -3364 2782 2293 1436 162 132 4 chr3 53808042 53808308 -164228850 - AluJb SINE Alu -1 301 2 253 329 126 13 chr3 53808428 53808659 -164228499 - HAL1 LINE L1 -1425 1082 826 1331 187 111 103 chr3 53810380 53810499 -164226659 - L1MC4 LINE L1 -11 8031 7914 459 0 0 0 chr3 53810499 53810550 -164226608 + (CA)n Simple_repeat Simple_repeat 2 52 0 1331 187 111 103 chr3 53810550 53810971 -164226187 - L1MC4 LINE L1 -128 7914 7487 264 226 0 0 chr3 53811387 53811449 -164225709 + (TA)n Simple_repeat Simple_repeat 1 62 0 3594 35 5 2 chr3 53811450 53811878 -164225280 - L1PA6 LINE L1 -16 6138 5710 640 261 22 40 chr3 53812699 53812921 -164224237 - L2 LINE L2 -1 3312 3095 258 105 0 0 chr3 53816662 53816700 -164220458 + (A)n Simple_repeat Simple_repeat 1 38 0 196 303 45 0 chr3 53817313 53817379 -164219779 + MIR SINE MIR 117 185 -77 272 263 0 13 chr3 53817972 53818048 -164219110 + MERVL LTR ERVL 873 947 -4538 308 315 56 85 chr3 53818052 53818534 -164218624 + MERVL LTR ERVL 1122 1589 -4175 188 143 0 29 chr3 53819317 53819352 -164217806 + MIR SINE MIR 116 149 -113 974 112 108 39 chr3 53821432 53821637 -164215521 - MSTA LTR MaLR 0 428 180 295 298 79 34 chr3 53823817 53823941 -164213217 + MIR SINE MIR 59 195 -67 2525 74 0 0 chr3 53823941 53824240 -164212918 + AluY SINE Alu 3 301 -10 295 298 79 34 chr3 53824240 53824293 -164212865 + MIR SINE MIR 195 244 -18 414 333 65 13 chr3 53824877 53825108 -164212050 - MIR SINE MIR -1 261 19 816 242 20 36 chr3 53825344 53825592 -164211566 - MIR SINE MIR 0 262 19 631 221 62 0 chr3 53827015 53827160 -164209998 - LTR16C LTR ERVL -189 302 149 199 294 176 0 chr3 53827976 53828044 -164209114 - L2 LINE L2 0 3272 3193 307 289 59 32 chr3 53828150 53828337 -164208821 - L2 LINE L2 -237 3035 2844 238 287 149 0 chr3 53831679 53831773 -164205385 + MER5A DNA MER1_type 9 116 -73 1004 204 9 42 chr3 53831773 53831989 -164205169 + AluJo SINE Alu 85 293 -19 509 289 113 39 chr3 53832246 53832661 -164204497 + L2 LINE L2 2868 3313 0 258 347 0 0 chr3 53832910 53832985 -164204173 - MIR SINE MIR -175 87 13 571 169 16 24 chr3 53833916 53834040 -164203118 + MER5A DNA MER1_type 1 123 -66 513 250 103 6 chr3 53835847 53836003 -164201155 - MIR SINE MIR -22 240 70 302 298 99 29 chr3 53836389 53836560 -164200598 - L1ME4a LINE L1 -17 6104 5922 276 181 79 102 chr3 53836756 53836883 -164200275 + L2 LINE L2 2830 2955 -319 180 289 0 0 chr3 53837049 53837094 -164200064 - MIR3 SINE MIR -52 156 112 324 299 45 25 chr3 53837275 53837432 -164199726 + L2 LINE L2 3120 3279 -34 401 250 94 91 chr3 53837739 53838059 -164199099 - MLT1J LTR MaLR -79 432 112 250 303 129 31 chr3 53838374 53838730 -164198428 - L1ME4a LINE L1 -239 5882 5492 194 233 267 0 chr3 53838760 53838850 -164198308 - MIR3 SINE MIR -48 160 47 1693 191 56 21 chr3 53839113 53839490 -164197668 + MLT1B LTR MaLR 1 390 0 460 248 95 67 chr3 53839824 53840034 -164197124 + LTR16C LTR ERVL 276 491 0 1893 165 27 8 chr3 53840062 53840415 -164196743 - L1MC3 LINE L1 -15 7770 5959 1686 154 27 0 chr3 53840410 53840703 -164196455 - L1MC1 LINE L1 -209 6124 5824 * 265 312 0 0 chr3 53840707 53840784 -164196374 + L1ME3A LINE L1 5067 5143 -1003 453 115 0 0 chr3 53840784 53840845 -164196313 + AluS SINE Alu 2 62 -256 307 90 30 0 chr3 53890946 53891011 -164146147 + L1MA4A LINE L1 6219 6291 -12 5863 111 15 2 chr3 53891025 53891960 -164145198 - L1MA4A LINE L1 -83 6220 5274 1138 128 6 0 chr3 53892060 53892240 -164144918 + HERVH LTR ERV1 3509 3689 -4024 * 4497 102 15 1 chr3 53892228 53892902 -164144256 + HERVH LTR ERV1 4466 5148 -2565 1321 167 12 0 chr3 53892904 53893150 -164144008 + HERVH LTR ERV1 5600 5848 -1865 1200 88 53 0 chr3 53893250 53893421 -164143737 + AluSp SINE Alu 119 298 -15 285 228 0 0 chr3 53893453 53893510 -164143648 + MIR SINE MIR 206 262 0 1804 135 33 0 chr3 53893547 53893855 -164143303 - AluSx SINE Alu 0 317 1 897 94 0 0 chr3 53893868 53893985 -164143173 - AluSq/x SINE Alu -196 117 1 330 200 35 35 chr3 53894009 53894094 -164143064 + MIR SINE MIR 178 262 0 584 262 37 33 chr3 53894722 53894993 -164142165 - MER93b LTR ERV1 0 373 102 5232 137 30 34 chr3 53894993 53895124 -164142034 + L1MA7 LINE L1 5202 5332 -959 2025 122 3 3 chr3 53895124 53895411 -164141747 + AluSc SINE Alu 1 287 -22 5232 137 30 34 chr3 53895411 53896370 -164140788 + L1MA7 LINE L1 5332 6291 0 1222 229 96 6 chr3 53896462 53896902 -164140256 + L1ME3A LINE L1 5254 5732 -438 413 150 50 20 chr3 53897181 53897281 -164139877 + L1ME3A LINE L1 5868 5970 -200 26 82 0 0 chr3 53897608 53897669 -164139489 + AT_rich Low_complexity Low_complexity 1 61 0 355 182 102 0 chr3 53897753 53897841 -164139317 - L1MC1 LINE L1 0 6333 6237 2074 82 20 41 chr3 53898245 53898539 -164138619 + AluSg SINE Alu 1 288 -22 466 154 0 13 chr3 53898604 53898682 -164138476 + AluS SINE Alu 221 297 -14 416 218 0 0 chr3 53898878 53898956 -164138202 - MER2 DNA MER2_type 0 345 268 819 191 29 0 chr3 53898993 53899166 -164137992 - MER2 DNA MER2_type -167 178 1 373 179 26 26 chr3 53899708 53899786 -164137372 - MER45A DNA AcHobo -2 176 99 334 191 0 28 chr3 53899769 53899856 -164137302 + MER39 LTR ERV1 485 594 -84 * 917 123 0 0 chr3 53899858 53899988 -164137170 + FLAM_C SINE Alu 2 131 -2 296 170 0 19 chr3 53899988 53900041 -164137117 - MER45A DNA AcHobo -69 109 58 358 271 127 44 chr3 53900192 53900564 -164136594 + LTR33A LTR ERVL 2 433 -90 1315 209 98 51 chr3 53900599 53901077 -164136081 + MER39 LTR ERV1 1 682 -25 263 153 85 0 chr3 53901137 53901196 -164135962 - LTR48 LTR ERV1 -35 752 689 1099 126 6 6 chr3 53901918 53902100 -164135058 - MER84 LTR ERVI -321 186 5 22 35 0 0 chr3 53904905 53904934 -164132224 + AT_rich Low_complexity Low_complexity 1 29 0 623 222 132 6 chr3 53904995 53905162 -164131996 - MER5A DNA MER1_type 0 189 2 21 0 0 0 chr3 53905318 53905339 -164131819 + AT_rich Low_complexity Low_complexity 1 21 0 794 210 32 0 chr3 53906666 53906823 -164130335 - MER5A DNA MER1_type -5 184 23 991 235 50 22 chr3 53908399 53908805 -164128353 + L1MC5 LINE L1 6476 6842 -966 749 218 122 41 chr3 53908938 53909300 -164127858 + L1MC5 LINE L1 7136 7526 -435 760 191 191 7 chr3 53909648 53909926 -164127232 + L1ME3A LINE L1 5272 5600 -562 1998 188 41 5 chr3 53909939 53910355 -164126803 + MER63B DNA MER1_type 1 431 -5 438 288 82 21 chr3 53910455 53910688 -164126470 + L1ME3A LINE L1 5724 5970 -200 21 71 0 0 chr3 53912441 53912483 -164124675 + AT_rich Low_complexity Low_complexity 1 42 0 21 57 0 0 chr3 53912703 53912738 -164124420 + AT_rich Low_complexity Low_complexity 1 35 0 2021 122 28 11 chr3 53913553 53913839 -164123319 + AluSg SINE Alu 2 292 -18 687 97 70 35 chr3 53916536 53916672 -164120486 + AluSg/x SINE Alu 178 312 0 417 103 340 10 chr3 53916933 53917030 -164120128 - MER119 DNA MER1_type 0 583 455 1228 145 18 13 chr3 53917692 53917920 -164119238 - L1MA4 LINE L1 -4 6296 6068 4321 127 248 22 chr3 53918023 53918999 -164118159 + Tigger3b DNA MER2_type 1 1210 -1819 2100 140 3 0 chr3 53918999 53919291 -164117867 + AluSx SINE Alu 1 293 -19 4321 127 248 22 chr3 53919291 53919321 -164117837 + Tigger3b DNA MER2_type 1210 1232 0 1439 167 4 41 chr3 53919540 53919810 -164117348 - AluJb SINE Alu -17 295 36 429 118 67 44 chr3 53920095 53920230 -164116928 - L1MDa LINE L1 -4059 2481 2344 935 200 75 16 chr3 53920230 53920485 -164116673 + L1MC4a LINE L1 5602 5871 -1937 2515 260 72 21 chr3 53920487 53921952 -164115206 + L1M4 LINE L1 2151 3699 -2447 2258 120 10 0 chr3 53921952 53922260 -164114898 + AluSx SINE Alu 1 311 -1 2515 260 72 21 chr3 53922260 53922377 -164114781 + L1M4 LINE L1 3699 3809 -2337 225 284 147 11 chr3 53923540 53923635 -164113523 + L2 LINE L2 3161 3268 -4 2001 158 38 28 chr3 53923764 53924188 -164112970 - L1MB8 LINE L1 -153 6025 5598 374 294 84 50 chr3 53924741 53925156 -164112002 + L2 LINE L2 2721 3156 -157 623 251 146 72 chr3 53925169 53925643 -164111515 + LTR33A LTR ERVL 7 515 -8 862 72 0 0 chr3 53925648 53925774 -164111384 - LTR12 LTR ERV1 -21 693 270 3847 151 136 3 chr3 53925774 53926503 -164110655 - LTR12 LTR ERV1 0 826 1 473 227 16 22 chr3 53926684 53926869 -164110289 - pTR5 LTR ERV1 -1483 955 772 650 255 16 21 chr3 53926869 53927057 -164110101 + L2 LINE L2 3127 3313 0 998 243 81 14 chr3 53927073 53927449 -164109709 + LTR16A LTR ERVL 14 450 0 478 279 128 19 chr3 53927971 53928236 -164108922 + MLT1L LTR MaLR 312 605 -10 301 196 11 11 chr3 53928333 53928425 -164108733 + (TA)n Simple_repeat Simple_repeat 1 92 0 976 249 79 3 chr3 53928974 53929258 -164107900 + L2 LINE L2 2710 3008 -305 182 183 150 17 chr3 53929444 53929504 -164107654 + L2 LINE L2 3205 3272 0 256 248 46 28 chr3 53929714 53929823 -164107335 + L1ME4a LINE L1 5805 5915 -206 2389 90 0 0 chr3 53929888 53930187 -164106971 - AluY SINE Alu -12 299 1 233 255 122 31 chr3 53930859 53931055 -164106103 - MLT1L LTR MaLR -363 252 39 435 269 82 0 chr3 53931525 53931659 -164105499 + MIR SINE MIR 47 191 -71 2358 75 7 13 chr3 53932046 53932353 -164104805 + AluY SINE Alu 1 305 -6 229 340 101 21 chr3 53933628 53933799 -164103359 - MIR SINE MIR 0 262 73 2468 67 0 6 chr3 53933799 53934112 -164103046 + AluY SINE Alu 1 311 0 229 340 101 21 chr3 53934112 53934128 -164103030 - MIR SINE MIR -189 73 60 556 262 7 7 chr3 53934255 53934396 -164102762 + LTR16C LTR ERVL 59 199 -292 1080 170 46 5 chr3 53934398 53934616 -164102542 - MLT2D LTR ERVL -170 244 18 794 229 9 18 chr3 53934619 53934837 -164102321 + LTR16C LTR ERVL 276 491 0 220 344 50 100 chr3 53934912 53935153 -164102005 - L2 LINE L2 -138 3134 2906 254 289 111 22 chr3 53935793 53935928 -164101230 + L2 LINE L2 3167 3313 0 1925 128 17 10 chr3 53937175 53937471 -164099687 - AluJb SINE Alu -14 298 1 596 152 16 8 chr3 53937471 53937596 -164099562 + MER53 DNA DNA 61 186 -3 1674 191 0 17 chr3 53938200 53938493 -164098665 + AluJo SINE Alu 1 288 -24 195 129 0 0 chr3 53938554 53938585 -164098573 + (TG)n Simple_repeat Simple_repeat 1 31 0 24 0 0 0 chr3 53938766 53938790 -164098368 + AT_rich Low_complexity Low_complexity 1 24 0 1055 232 131 82 chr3 53938842 53939666 -164097492 + L1MEc LINE L1 1343 2125 -4090 2262 119 0 0 chr3 53939666 53939968 -164097190 + AluSx SINE Alu 1 302 -10 1055 232 131 82 chr3 53939968 53940170 -164096988 + L1MEc LINE L1 2125 2316 -3899 2287 93 0 3 chr3 53940170 53940459 -164096699 + AluSg SINE Alu 11 298 -12 1055 232 131 82 chr3 53940459 53940559 -164096599 + L1MEc LINE L1 2316 2516 -3699 722 257 134 6 chr3 53941769 53941997 -164095161 - MIR SINE MIR -6 256 2 1734 127 99 30 chr3 53942471 53942833 -164094325 + L1MA7 LINE L1 5895 6281 -10 318 290 152 7 chr3 53943098 53943236 -164093922 - L2 LINE L2 -11 3302 3145 1756 153 124 52 chr3 53943294 53943737 -164093421 + MER92B LTR ERV1 4 478 -158 2433 89 0 0 chr3 53943787 53944089 -164093069 - AluSx SINE Alu -10 302 1 978 154 0 0 chr3 53944089 53944225 -164092933 - AluSq/x SINE Alu -176 136 1 230 291 105 0 chr3 53944469 53944555 -164092603 + MIR3 SINE MIR 98 192 -16 1634 186 11 0 chr3 53945148 53945428 -164091730 + AluJo SINE Alu 1 283 -29 396 0 0 0 chr3 53945438 53945482 -164091676 + (TG)n Simple_repeat Simple_repeat 2 45 0 443 279 78 0 chr3 53945501 53945630 -164091528 - MIR SINE MIR -13 249 111 221 333 77 36 chr3 53946063 53946231 -164090927 - L2 LINE L2 -223 3049 2875 229 182 136 0 chr3 53946251 53946317 -164090841 - LTR37A LTR ERV1 0 426 352 12793 189 55 20 chr3 53946418 53947156 -164090002 - L1 LINE L1 -840 6008 5298 2219 105 0 7 chr3 53947156 53947460 -164089698 - AluSc SINE Alu -7 302 1 12793 189 55 20 chr3 53947460 53947973 -164089185 - L1 LINE L1 -1550 5298 4805 2458 147 43 19 chr3 53947973 53948389 -164088769 + MSTA LTR MaLR 1 426 -2 12793 189 55 20 chr3 53948389 53950628 -164086530 - L1 LINE L1 -2043 4805 2449 1716 171 29 0 chr3 53950730 53951011 -164086147 - AluJb SINE Alu -23 289 1 1765 192 84 67 chr3 53951038 53951513 -164085645 - L1 LINE L1 -6165 684 202 931 275 70 8 chr3 53951725 53952125 -164085033 - L1M4 LINE L1 -945 5201 4777 195 347 22 82 chr3 53952708 53952976 -164084182 + L2 LINE L2 2813 3064 -208 303 269 88 47 chr3 53953591 53953762 -164083396 + L1MC4a LINE L1 4755 4932 -1214 26 50 0 0 chr3 53953964 53954004 -164083154 + AT_rich Low_complexity Low_complexity 1 40 0 1085 233 25 22 chr3 53954138 53954460 -164082698 - L1MC4 LINE L1 -135 7907 7585 2916 153 25 8 chr3 53954480 53955010 -164082148 - L1MB4 LINE L1 -8 6172 5634 358 197 26 0 chr3 53955415 53955491 -164081667 - AluJb SINE Alu -183 119 42 2303 97 3 0 chr3 53956330 53956629 -164080529 + AluSx SINE Alu 1 300 -12 693 303 32 0 chr3 53956636 53956857 -164080301 - MIR SINE MIR -25 237 10 406 262 52 42 chr3 53957846 53958037 -164079121 + L1MC4a LINE L1 5335 5527 -2281 295 286 109 71 chr3 53958108 53958402 -164078756 + L1MC4a LINE L1 5625 5929 -1879 330 219 49 0 chr3 53959307 53959389 -164077769 - L1MB4 LINE L1 -462 5659 5574 2405 66 0 23 chr3 53959442 53959747 -164077411 + AluY SINE Alu 1 298 -13 305 292 71 32 chr3 53959998 53960152 -164077006 - L1MB4 LINE L1 -550 5571 5412 239 86 0 0 chr3 53960158 53960193 -164076965 - Alu SINE Alu -8 293 259 1215 75 0 0 chr3 53960193 53960339 -164076819 - AluY SINE Alu -165 146 1 697 262 145 9 chr3 53960469 53960683 -164076475 - MIR SINE MIR -19 243 1 969 196 27 0 chr3 53960827 53961011 -164076147 - MER5A DNA MER1_type 0 189 1 209 278 0 83 chr3 53961141 53961213 -164075945 + MIR SINE MIR 191 256 -6 306 0 0 0 chr3 53961217 53961251 -164075907 + (TGGA)n Simple_repeat Simple_repeat 1 34 0 252 0 0 0 chr3 53961312 53961340 -164075818 + (TG)n Simple_repeat Simple_repeat 2 29 0 2113 120 3 19 chr3 53961473 53961782 -164075376 - AluSx SINE Alu -7 305 2 374 229 23 0 chr3 53961922 53962053 -164075105 + HAL1b LINE L1 1213 1346 -2 1943 139 0 36 chr3 53962064 53962373 -164074785 + AluJb SINE Alu 1 298 -14 26 30 0 0 chr3 53962466 53962499 -164074659 + AT_rich Low_complexity Low_complexity 1 33 0 242 209 30 60 chr3 53962502 53962569 -164074589 + MER113 DNA MER1_type? 457 521 0 23 0 0 0 chr3 53962750 53962773 -164074385 + AT_rich Low_complexity Low_complexity 1 23 0 2118 129 0 0 chr3 53963250 53963553 -164073605 + AluSx SINE Alu 1 303 -9 2207 102 0 13 chr3 53964277 53964580 -164072578 + AluSx SINE Alu 1 299 -13 258 143 57 0 chr3 53964879 53964984 -164072174 + (TA)n Simple_repeat Simple_repeat 2 112 0 1564 233 66 25 chr3 53965230 53965490 -164071668 + L1MD2 LINE L1 4433 4681 -1465 1808 140 38 17 chr3 53965490 53965783 -164071375 + AluJb SINE Alu 1 299 -13 1564 233 66 25 chr3 53965783 53966128 -164071030 + L1MD2 LINE L1 4681 5063 -1083 394 71 60 0 chr3 53966135 53966219 -164070939 + (TA)n Simple_repeat Simple_repeat 1 89 0 2411 107 0 0 chr3 53966219 53966529 -164070629 - AluSg SINE Alu 0 310 1 7126 37 0 1 chr3 53966564 53967454 -164069704 + L1PA3 LINE L1 5296 6155 0 2038 114 40 17 chr3 53967459 53967757 -164069401 + AluSx SINE Alu 1 305 -7 2968 175 48 43 chr3 53967757 53968501 -164068657 + L1MD2 LINE L1 5323 6070 -289 468 189 190 49 chr3 53968506 53968693 -164068465 + L1MD2 LINE L1 6136 7985 -10 1067 252 57 68 chr3 53968723 53969438 -164067720 - L1MC/D LINE L1 -748 5398 4923 2344 77 0 0 chr3 53969438 53969725 -164067433 + AluY SINE Alu 1 287 -24 1067 252 57 68 chr3 53969725 53969914 -164067244 - L1MC/D LINE L1 -1223 4923 4733 1524 186 38 0 chr3 53970168 53970432 -164066726 - AluJb SINE Alu -28 284 11 198 0 0 0 chr3 53970787 53970809 -164066349 + (T)n Simple_repeat Simple_repeat 1 22 0 1910 171 7 0 chr3 53972676 53972975 -164064183 - AluJo SINE Alu -11 301 1 595 229 96 13 chr3 53973359 53973516 -164063642 - MER58C DNA MER1_type 0 215 46 393 208 271 10 chr3 53973924 53974020 -164063138 + FLAM_A SINE Alu 2 122 -11 28 0 0 0 chr3 53974020 53974048 -164063110 + AT_rich Low_complexity Low_complexity 1 28 0 843 86 86 0 chr3 53974069 53974197 -164062961 + MER85 DNA T2_type 1 139 0 2282 112 3 0 chr3 53974326 53974629 -164062529 - AluSp SINE Alu -9 304 1 1905 94 64 4 chr3 53975299 53975565 -164061593 + AluSx SINE Alu 1 282 -30 2756 54 0 0 chr3 53975566 53975917 -164061241 - L1PA5 LINE L1 -131 6023 5673 26 74 0 0 chr3 53976024 53976078 -164061080 + AT_rich Low_complexity Low_complexity 1 54 0 788 222 53 14 chr3 53976245 53976452 -164060706 + MER58C DNA MER1_type 1 215 0 259 160 20 0 chr3 53977494 53977544 -164059614 + MIR SINE MIR 185 235 -27 2034 94 3 28 chr3 53978130 53978439 -164058719 + AluSc SINE Alu 1 302 0 24 32 0 0 chr3 53978550 53978581 -164058577 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr3 53978608 53978630 -164058528 + AT_rich Low_complexity Low_complexity 1 22 0 311 347 53 21 chr3 53979746 53979936 -164057222 - L2 LINE L2 -459 2855 2660 183 318 94 24 chr3 53980022 53980107 -164057051 - L2 LINE L2 -814 2500 2410 618 125 0 0 chr3 53980395 53980483 -164056675 + AluJb SINE Alu 1 88 -224 1488 154 21 4 chr3 53980519 53980759 -164056399 + AluJb SINE Alu 66 309 -3 25 51 0 0 chr3 53980863 53980902 -164056256 + AT_rich Low_complexity Low_complexity 1 39 0 196 175 75 0 chr3 53981787 53981827 -164055331 - L2 LINE L2 -2 3311 3269 506 242 38 25 chr3 53981933 53982090 -164055068 - MER112 DNA MER1_type -96 164 6 23 78 0 0 chr3 53982372 53982423 -164054735 + AT_rich Low_complexity Low_complexity 1 51 0 961 180 5 15 chr3 53982453 53982653 -164054505 - L1MB8 LINE L1 -1 6177 5980 3466 172 53 66 chr3 53983150 53983458 -164053700 - L1MB8 LINE L1 -2 6176 5865 2229 117 3 0 chr3 53983458 53983757 -164053401 - AluSx SINE Alu -12 300 1 3466 172 53 66 chr3 53983757 53984455 -164052703 - L1MB8 LINE L1 -313 5865 5183 261 267 198 45 chr3 53984846 53985048 -164052110 + MIR SINE MIR 12 244 -18 22 0 0 0 chr3 53985151 53985173 -164051985 + AT_rich Low_complexity Low_complexity 1 22 0 206 286 36 0 chr3 53985348 53985404 -164051754 + L2 LINE L2 3199 3256 -16 2202 119 3 0 chr3 53985555 53985858 -164051300 - AluSx SINE Alu -8 304 1 210 150 0 0 chr3 53986334 53986374 -164050784 + (TA)n Simple_repeat Simple_repeat 1 40 0 1510 208 92 82 chr3 53986948 53987351 -164049807 - MLT1F1 LTR MaLR -3 564 154 2213 204 65 10 chr3 53987351 53987840 -164049318 - LTR40a LTR ERVL -3 516 1 1510 208 92 82 chr3 53987840 53987935 -164049223 - MLT1F1 LTR MaLR -413 154 61 559 184 217 42 chr3 53988979 53989145 -164048013 - MER112 DNA MER1_type 0 256 42 1663 180 32 3 chr3 53989145 53989429 -164047729 - AluJo SINE Alu -20 292 1 559 184 217 42 chr3 53989429 53989479 -164047679 - MER112 DNA MER1_type -214 42 2 21 36 0 0 chr3 53990536 53990564 -164046594 + AT_rich Low_complexity Low_complexity 1 28 0 1769 145 3 77 chr3 53990609 53990934 -164046224 - AluJb SINE Alu -11 301 1 3371 118 12 0 chr3 53991542 53992043 -164045115 - MER84 LTR ERV1 0 507 1 10756 107 25 11 chr3 53992043 53993154 -164044004 - MER84-int LTR ERV1 0 4954 3810 2138 137 0 0 chr3 53993154 53993447 -164043711 + AluSg SINE Alu 1 293 -17 10756 107 25 11 chr3 53993447 53993995 -164043163 - MER84-int LTR ERV1 -1144 3810 3271 3618 99 77 41 chr3 53993987 53994622 -164042536 - MER84-int LTR ERV1 -2250 2704 2047 * 3795 74 58 9 chr3 53994619 53995186 -164041972 - MER84-int LTR ERV1 -3089 1865 1271 404 339 123 42 chr3 53995335 53995833 -164041325 - L2 LINE L2 -493 2821 2284 2523 58 7 10 chr3 53999782 54000090 -164037068 - AluY SINE Alu -4 307 1 363 292 146 11 chr3 54000761 54000946 -164036212 - MIR SINE MIR -21 241 32 350 268 222 20 chr3 54000958 54001111 -164036047 + MIR SINE MIR 31 214 -48 1250 262 131 32 chr3 54001360 54001904 -164035254 - HAL1b LINE L1 -81 1267 620 2127 104 10 10 chr3 54001904 54002202 -164034956 - AluSx SINE Alu -14 298 1 1250 262 131 32 chr3 54002202 54002444 -164034714 - HAL1b LINE L1 -728 620 403 24 0 0 0 chr3 54002713 54002737 -164034421 + AT_rich Low_complexity Low_complexity 1 24 0 45 19 0 0 chr3 54004641 54004693 -164032465 + AT_rich Low_complexity Low_complexity 1 52 0 309 202 36 60 chr3 54004802 54004886 -164032272 - MIR SINE MIR -160 102 21 1769 189 0 16 chr3 54005359 54005672 -164031486 - AluJb SINE Alu -4 308 1 355 273 91 20 chr3 54005739 54005937 -164031221 + MER112 DNA MER1_type 9 220 -40 234 314 16 67 chr3 54007085 54007277 -164029881 - L2 LINE L2 -50 3222 2977 400 290 24 0 chr3 54007374 54007498 -164029660 + MER94 DNA DNA 1 127 -7 293 304 302 15 chr3 54007508 54007919 -164029239 - L2 LINE L2 -541 2773 2245 560 214 112 51 chr3 54008303 54008499 -164028659 - MIR SINE MIR -54 208 1 2364 96 3 0 chr3 54008595 54008898 -164028260 + AluSp SINE Alu 1 304 -9 2410 72 0 0 chr3 54009620 54009913 -164027245 + AluY SINE Alu 1 293 -18 459 0 0 0 chr3 54009920 54009971 -164027187 + (CA)n Simple_repeat Simple_repeat 2 52 0 28 91 0 0 chr3 54010071 54010148 -164027010 + AT_rich Low_complexity Low_complexity 1 77 0 188 83 0 56 chr3 54011221 54011257 -164025901 + (TATG)n Simple_repeat Simple_repeat 3 36 0 1718 151 13 34 chr3 54011297 54011595 -164025563 + AluJb SINE Alu 2 293 -19 613 146 19 25 chr3 54011602 54011760 -164025398 + (TG)n Simple_repeat Simple_repeat 1 157 0 646 225 294 7 chr3 54011883 54012159 -164024999 - L1MD2 LINE L1 0 6359 6005 750 233 45 19 chr3 54012209 54012475 -164024683 - L1ME LINE L1 -2904 3176 2904 3006 167 11 40 chr3 54012481 54013126 -164024032 - L1MD1 LINE L1 -22 6220 5595 1068 281 77 30 chr3 54013124 54013615 -164023543 - L1ME LINE L1 -5538 532 19 * 652 246 206 31 chr3 54013725 54014128 -164023030 - L1MD2 LINE L1 -1992 5816 5326 1871 140 52 25 chr3 54014128 54014493 -164022665 + THE1C LTR MaLR 1 375 0 652 246 206 31 chr3 54014493 54014536 -164022622 - L1MD2 LINE L1 -2482 5326 5292 313 315 47 7 chr3 54014639 54014788 -164022370 - L1MD2 LINE L1 -977 5169 5015 21 0 0 0 chr3 54014884 54014905 -164022253 + AT_rich Low_complexity Low_complexity 1 21 0 409 232 152 69 chr3 54014999 54015275 -164021883 - L1MD2 LINE L1 -1084 5062 4764 259 207 99 16 chr3 54015381 54015502 -164021656 - L1MD2 LINE L1 -1560 4586 4456 3285 174 9 0 chr3 54015510 54016159 -164020999 - L1P LINE L1 -1093 5053 4399 255 219 29 95 chr3 54017113 54017218 -164019940 - MIR3 SINE MIR -5 203 106 915 179 64 0 chr3 54017248 54017421 -164019737 + MER5A DNA MER1_type 1 184 -5 6030 121 41 13 chr3 54018515 54019526 -164017632 - Tigger1 DNA MER2_type 0 2418 1380 736 194 90 0 chr3 54019658 54019813 -164017345 + FAM SINE Alu 1 169 -6 7619 133 31 14 chr3 54019829 54021136 -164016022 - Tigger1 DNA MER2_type -1034 1384 55 26 0 0 0 chr3 54021136 54021162 -164015996 + AT_rich Low_complexity Low_complexity 1 26 0 2200 115 0 10 chr3 54021537 54021842 -164015316 - AluSg SINE Alu -8 302 1 21 36 0 0 chr3 54022255 54022283 -164014875 + AT_rich Low_complexity Low_complexity 1 28 0 206 61 0 30 chr3 54022283 54022316 -164014842 + (TTTTTA)n Simple_repeat Simple_repeat 1 32 0 1295 197 47 85 chr3 54022384 54022611 -164014547 - MLT1B LTR MaLR 0 390 183 2253 100 0 29 chr3 54022611 54022920 -164014238 - AluSx SINE Alu -2 310 11 1295 197 47 85 chr3 54022920 54023093 -164014065 - MLT1B LTR MaLR -207 183 5 380 268 131 35 chr3 54023492 54023690 -164013468 - L1 LINE L1 -810 5336 5120 2276 209 38 25 chr3 54023704 54024255 -164012903 + MLT1F1 LTR MaLR 2 559 -8 301 284 110 24 chr3 54024625 54024752 -164012406 - LTR33A LTR ERVL -277 246 109 600 298 83 23 chr3 54024763 54024882 -164012276 - LTR16B LTR ERVL -159 305 195 1797 108 30 19 chr3 54024882 54025151 -164012007 + AluSg SINE Alu 39 310 0 600 298 83 23 chr3 54025151 54025296 -164011862 - LTR16B LTR ERVL -269 195 25 409 279 14 36 chr3 54025536 54025676 -164011482 - L2 LINE L2 -14 3299 3163 2188 230 94 42 chr3 54025981 54026737 -164010421 - MER21B LTR ERV1 -52 811 17 1382 64 11 5 chr3 54026752 54026939 -164010219 - L1PA13 LINE L1 -19 6144 5957 777 164 16 0 chr3 54029088 54029210 -164007948 + FRAM SINE Alu 21 144 -32 2087 112 26 26 chr3 54029361 54029665 -164007493 - AluSx SINE Alu -8 304 1 808 166 121 0 chr3 54030740 54030897 -164006261 - LTR40a LTR ERVL 0 519 344 676 357 84 23 chr3 54030914 54031401 -164005757 - L2 LINE L2 -364 2950 2434 222 311 33 0 chr3 54031496 54031586 -164005572 - L2 LINE L2 -1072 2242 2150 262 188 94 0 chr3 54031901 54031965 -164005193 + L1ME4a LINE L1 6050 6119 -2 609 265 66 12 chr3 54032112 54032278 -164004880 - MER5B DNA MER1_type -2 176 2 225 240 365 0 chr3 54033610 54033714 -164003444 + L2 LINE L2 2814 2955 -359 781 279 62 39 chr3 54033958 54034266 -164002892 - MER102b DNA MER1_type -26 315 1 1574 233 57 64 chr3 54035233 54035779 -164001379 + MLT1F LTR MaLR 1 542 0 2211 119 0 0 chr3 54036842 54037145 -164000013 - AluSc SINE Alu -6 303 1 1707 177 27 0 chr3 54039406 54039700 -163997458 + AluJb SINE Alu 1 302 -10 378 0 0 0 chr3 54040386 54040428 -163996730 + (TA)n Simple_repeat Simple_repeat 2 43 0 2123 242 90 24 chr3 54040565 54041390 -163995768 + L1MEc LINE L1 1204 2082 -4314 1107 78 0 0 chr3 54041422 54041564 -163995594 - AluSg/x SINE Alu -2 310 169 459 0 0 0 chr3 54041574 54041625 -163995533 + (TG)n Simple_repeat Simple_repeat 2 52 0 1779 122 0 4 chr3 54041631 54041869 -163995289 - AluSq SINE Alu -76 237 1 4535 251 120 13 chr3 54041869 54043896 -163993262 + L1MEc LINE L1 2119 4398 -1817 2350 61 41 0 chr3 54043896 54044190 -163992968 + AluY SINE Alu 1 306 -5 410 229 76 25 chr3 54044276 54044394 -163992764 + MLT1J2 LTR MaLR 73 196 -254 2186 116 6 0 chr3 54044523 54044834 -163992324 + AluSp SINE Alu 1 313 0 1613 173 22 11 chr3 54044834 54045111 -163992047 - AluJb SINE Alu -31 281 1 271 268 80 9 chr3 54047184 54047296 -163989862 + MIR SINE MIR 124 243 -19 1728 142 47 7 chr3 54047638 54047912 -163989246 + AluJb SINE Alu 1 285 -27 209 272 19 29 chr3 54048289 54048392 -163988766 + C-rich Low_complexity Low_complexity 1 102 0 23 0 0 0 chr3 54049205 54049228 -163987930 + AT_rich Low_complexity Low_complexity 1 23 0 2342 93 10 0 chr3 54050764 54051065 -163986093 - AluSq SINE Alu -9 304 1 3229 137 26 94 chr3 54055009 54055668 -163981490 - LTR18B LTR ERVL 0 614 1 344 322 138 0 chr3 54055681 54055833 -163981325 - MER5A DNA MER1_type -2 187 15 223 375 109 0 chr3 54056170 54056298 -163980860 + L2 LINE L2 3122 3263 -9 4763 171 39 13 chr3 54056506 54057647 -163979511 + L1MB8 LINE L1 4999 6173 -5 1867 205 40 51 chr3 54058489 54058937 -163978221 - LTR47B LTR ERVL 0 443 1 612 263 39 11 chr3 54058978 54059157 -163978001 + MIR SINE MIR 79 262 0 785 253 144 0 chr3 54059303 54059532 -163977626 + MIR SINE MIR 1 262 0 248 292 136 8 chr3 54060720 54060970 -163976188 + L1M4 LINE L1 5122 5403 -743 233 287 11 35 chr3 54061131 54061218 -163975940 - L2 LINE L2 0 3313 3229 3128 138 62 43 chr3 54061458 54061769 -163975389 + L1MA6 LINE L1 4980 5283 -1017 336 48 0 0 chr3 54061769 54061811 -163975347 + (TAA)n Simple_repeat Simple_repeat 2 43 0 3128 138 62 43 chr3 54061811 54062175 -163974983 + L1MA6 LINE L1 5283 5638 -662 1520 191 56 0 chr3 54062175 54062442 -163974716 + AluJo SINE Alu 1 282 -30 3128 138 62 43 chr3 54062442 54062563 -163974595 + L1MA6 LINE L1 5638 5780 -520 1653 186 21 0 chr3 54062563 54062684 -163974474 + AluJo SINE Alu 1 118 -194 219 69 0 0 chr3 54062684 54062713 -163974445 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1653 186 21 0 chr3 54062713 54062882 -163974276 + AluJo SINE Alu 118 297 -15 3128 138 62 43 chr3 54062882 54062936 -163974222 + L1MA6 LINE L1 5780 5831 -469 444 222 18 90 chr3 54063088 54063255 -163973903 + L1ME3A LINE L1 3416 3570 -2576 * 6357 141 20 25 chr3 54063254 54065334 -163971824 + L1MA3 LINE L1 4235 6300 -5 740 276 28 60 chr3 54065372 54065462 -163971696 + L1ME3A LINE L1 3590 3681 -2465 2540 56 0 3 chr3 54065462 54065767 -163971391 + AluY SINE Alu 1 304 -7 740 276 28 60 chr3 54065767 54066028 -163971130 + L1ME3A LINE L1 3681 3930 -2216 677 282 128 23 chr3 54066020 54066552 -163970606 + L1ME3A LINE L1 4628 5215 -931 * 1147 224 40 129 chr3 54066576 54067211 -163969947 + L1ME3A LINE L1 5306 5873 -297 6408 109 25 0 chr3 54067211 54068198 -163968960 - L1PA13 LINE L1 -4 6159 5160 1147 224 40 129 chr3 54068198 54068269 -163968889 + L1ME3A LINE L1 5873 5949 -221 1832 171 3 3 chr3 54068493 54068785 -163968373 - AluSx SINE Alu -20 292 1 2430 47 3 10 chr3 54069906 54070207 -163966951 - AluY SINE Alu -12 299 1 226 171 229 0 chr3 54071417 54071522 -163965636 - Tigger8 DNA MER2_type -320 346 218 2148 123 0 0 chr3 54072215 54072516 -163964642 + AluSx SINE Alu 1 301 -11 314 243 77 41 chr3 54072555 54072703 -163964455 - MIR SINE MIR -64 144 1 1063 167 160 49 chr3 54072728 54073016 -163964142 - MER33 DNA MER1_type 0 324 5 1705 150 92 0 chr3 54073384 54073657 -163963501 - AluSg SINE Alu -12 298 1 643 220 46 3 chr3 54073754 54073914 -163963244 - MLT1A1 LTR MaLR 0 365 218 1176 116 62 4 chr3 54074017 54074242 -163962916 - LTR7 LTR ERV1 0 450 213 509 169 11 0 chr3 54124267 54124356 -163912802 + AluSp/q SINE Alu 210 299 -14 1574 297 52 82 chr3 54125127 54125463 -163911695 - MER70-int LTR ERVL -1524 3499 3155 2255 96 7 0 chr3 54125463 54125764 -163911394 + AluSx SINE Alu 1 303 -9 1574 297 52 82 chr3 54125764 54126236 -163910922 - MER70-int LTR ERVL -1868 3155 2715 909 272 11 23 chr3 54126605 54126866 -163910292 - MER70-int LTR ERVL -2310 2713 2456 980 208 61 58 chr3 54126874 54127186 -163909972 - MLT1A1 LTR MaLR 0 365 53 833 178 0 0 chr3 54127186 54127315 -163909843 - FLAM_A SINE Alu -13 129 1 312 75 75 38 chr3 54127315 54127368 -163909790 - MSTC LTR MaLR -373 55 1 693 322 60 18 chr3 54127369 54127652 -163909506 - MER70-int LTR ERVL -2576 2447 2153 2115 171 55 2 chr3 54127658 54128056 -163909102 - MER95 LTR ERV -4 427 9 1154 301 45 15 chr3 54128060 54128452 -163908706 - MER70-int LTR ERVL -2081 3404 1751 1978 217 40 53 chr3 54128666 54129215 -163907943 + MER92B LTR ERV1 1 542 -94 666 137 10 10 chr3 54129215 54129317 -163907841 - MER74C LTR ERVL -358 102 1 2344 72 10 3 chr3 54129322 54129626 -163907532 + AluSp SINE Alu 1 306 -7 2287 82 0 0 chr3 54129633 54129926 -163907232 + AluSc SINE Alu 2 294 -15 512 289 36 8 chr3 54130255 54130499 -163906659 - L1MEd LINE L1 -4862 1257 1063 260 220 0 0 chr3 54130567 54130617 -163906541 - L1MEd LINE L1 -6068 51 2 2584 42 0 0 chr3 54130658 54130964 -163906194 + AluY SINE Alu 1 306 -5 2499 222 62 0 chr3 54131308 54131825 -163905333 - MLT1F1 LTR MaLR -3 564 16 1308 174 4 0 chr3 54131825 54132055 -163905103 - Tigger2 DNA MER2_type -1 2717 2487 1605 159 38 14 chr3 54132057 54132347 -163904811 + AluJo SINE Alu 1 297 -15 1321 210 0 0 chr3 54132351 54132599 -163904559 + AluJb SINE Alu 16 263 -49 2071 132 0 0 chr3 54132953 54133256 -163903902 + AluSx SINE Alu 3 305 -7 327 315 174 11 chr3 54133869 54134053 -163903105 - L1M4 LINE L1 -1968 4178 3965 734 203 198 15 chr3 54134063 54134260 -163902898 + MIR SINE MIR 2 234 -28 1600 175 7 16 chr3 54134292 54134600 -163902558 - AluJo SINE Alu -7 305 1 323 312 126 43 chr3 54134600 54134831 -163902327 - L1M4 LINE L1 -2171 3975 3726 1337 210 42 33 chr3 54134972 54135306 -163901852 - MLT1A2 LTR MaLR 0 374 38 665 148 49 35 chr3 54135324 54135466 -163901692 - MLT1A2-int LTR MaLR 0 1735 1592 2150 75 0 7 chr3 54135469 54135773 -163901385 + AluSg SINE Alu 1 302 0 2183 110 0 22 chr3 54135787 54136106 -163901052 + AluSx SINE Alu 1 312 0 322 248 267 30 chr3 54136663 54136865 -163900293 - L1 LINE L1 -1639 4507 4258 311 292 85 42 chr3 54136873 54137203 -163899955 - L1MC/D LINE L1 -478 5643 5333 21 0 0 0 chr3 54137262 54137283 -163899875 + AT_rich Low_complexity Low_complexity 1 21 0 2244 92 0 0 chr3 54137387 54137680 -163899478 - AluSx SINE Alu -19 293 1 1951 97 17 30 chr3 54137681 54137981 -163899177 - AluSp SINE Alu -17 296 1 255 298 69 77 chr3 54138017 54138393 -163898765 + MER70-int LTR ERVL 4464 4836 -187 1848 213 27 5 chr3 54138444 54138858 -163898300 + L1MC/D LINE L1 3955 4377 -1769 1295 90 15 35 chr3 54138858 54139059 -163898099 + AluSp SINE Alu 105 301 -12 3291 230 31 29 chr3 54139060 54139640 -163897518 + L1MC/D LINE L1 4379 4963 -1183 2304 87 0 0 chr3 54139640 54139939 -163897219 + AluSc SINE Alu 1 299 -10 3291 230 31 29 chr3 54139939 54140307 -163896851 + L1MC/D LINE L1 4963 5329 -817 836 117 8 16 chr3 54140307 54140435 -163896723 + AluJb SINE Alu 1 127 -185 2507 164 29 18 chr3 54140435 54140924 -163896234 + L1MC/D LINE L1 5314 5807 -526 216 0 0 0 chr3 54141360 54141384 -163895774 + (T)n Simple_repeat Simple_repeat 1 24 0 381 273 113 13 chr3 54143166 54143316 -163893842 + MER5B DNA MER1_type 14 178 0 348 236 217 0 chr3 54143697 54143803 -163893355 - MER5A DNA MER1_type 0 189 61 24 67 0 0 chr3 54143805 54143850 -163893308 + AT_rich Low_complexity Low_complexity 1 45 0 319 227 15 0 chr3 54143873 54143939 -163893219 - MER5A DNA MER1_type -119 70 4 2031 124 3 0 chr3 54143995 54144285 -163892873 + AluJb SINE Alu 6 296 -16 195 129 0 0 chr3 54144572 54144603 -163892555 + (AGGGGG)n Simple_repeat Simple_repeat 2 32 0 530 190 10 10 chr3 54144874 54144974 -163892184 + FLAM_A SINE Alu 10 109 -33 203 253 13 38 chr3 54146281 54146360 -163890798 + CT-rich Low_complexity Low_complexity 4 80 0 1347 202 22 4 chr3 54147156 54147423 -163889735 + AluJo SINE Alu 2 273 -39 1886 130 6 16 chr3 54147578 54147893 -163889265 - AluSq SINE Alu 0 313 2 1152 204 33 62 chr3 54147894 54148379 -163888779 - L1M4 LINE L1 -1118 5028 4558 202 302 213 10 chr3 54148392 54148594 -163888564 - L2 LINE L2 -827 2487 2245 859 146 0 0 chr3 54149256 54149400 -163887758 + AluJb SINE Alu 133 276 -36 242 219 27 0 chr3 54149400 54149473 -163887685 + GA-rich Low_complexity Low_complexity 3 77 0 836 172 184 31 chr3 54149595 54149851 -163887307 - LTR54B LTR ERV1 -122 376 82 1783 118 7 21 chr3 54149851 54150161 -163886997 - AluSx SINE Alu 0 306 1 215 0 0 62 chr3 54150161 54150193 -163886965 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2067 96 3 0 chr3 54150193 54150475 -163886683 - AluSx SINE Alu -29 283 1 1730 144 0 33 chr3 54150477 54150782 -163886376 - AluSx SINE Alu -17 295 1 1184 139 9 51 chr3 54151971 54152186 -163884972 + Tigger2a DNA MER2_type 1 206 -228 263 244 56 11 chr3 54152189 54152279 -163884879 - AluJb SINE Alu -15 287 194 2184 109 6 0 chr3 54152595 54152906 -163884252 + AluSp SINE Alu 1 313 0 1859 124 10 14 chr3 54153313 54153604 -163883554 + AluSg1 SINE Alu 1 290 -19 398 351 71 0 chr3 54153766 54154048 -163883110 + L1MC4a LINE L1 5538 5839 -1969 463 234 186 27 chr3 54154623 54154811 -163882347 - L2 LINE L2 -1 3312 3095 215 266 0 44 chr3 54155050 54155163 -163881995 + C-rich Low_complexity Low_complexity 1 108 0 196 0 114 0 chr3 54155326 54155370 -163881788 + (CGGG)n Simple_repeat Simple_repeat 3 51 0 2001 84 27 10 chr3 54155569 54155866 -163881292 + AluSg SINE Alu 1 302 -8 14158 82 40 51 chr3 54156316 54157336 -163879822 + HUERS-P1 LTR ERV1 1206 2236 -4027 321 26 0 0 chr3 54157346 54157384 -163879774 + (TG)n Simple_repeat Simple_repeat 1 38 0 1941 138 3 0 chr3 54157384 54157664 -163879494 - AluSx SINE Alu -28 284 1 14158 82 40 51 chr3 54157664 54158174 -163878984 + HUERS-P1 LTR ERV1 2236 2750 -3513 1875 156 7 0 chr3 54158174 54158481 -163878677 + AluSx SINE Alu 1 309 -3 14158 82 40 51 chr3 54158481 54159117 -163878041 + HUERS-P1 LTR ERV1 2750 3348 -2915 225 252 17 26 chr3 54159200 54159315 -163877843 + C-rich Low_complexity Low_complexity 1 114 0 203 280 0 20 chr3 54159396 54159496 -163877662 + C-rich Low_complexity Low_complexity 2 99 0 389 327 19 31 chr3 54159505 54159664 -163877494 + CT-rich Low_complexity Low_complexity 4 160 0 384 285 156 27 chr3 54160699 54160760 -163876398 - MIR SINE MIR -6 256 204 1819 149 13 7 chr3 54160760 54161061 -163876097 - AluJb SINE Alu -9 303 1 384 285 156 27 chr3 54161061 54161185 -163875973 - MIR SINE MIR -58 204 47 234 217 50 0 chr3 54164618 54164678 -163872480 - AluYb8 SINE Alu -3 305 243 5206 71 14 33 chr3 54164719 54165423 -163871735 - LTR8 LTR ERV1 0 691 1 7498 143 34 18 chr3 54165424 54166673 -163870485 - HUERS-P1 LTR ERV1 -1 6262 4994 516 114 0 154 chr3 54166831 54166954 -163870204 + MER21A LTR ERV1 70 173 -758 * 1553 217 30 119 chr3 54166948 54167511 -163869647 + MER21A LTR ERV1 111 623 -308 655 278 134 22 chr3 54167529 54168066 -163869092 + L1MC/D LINE L1 4395 4991 -1155 820 172 0 22 chr3 54168140 54168274 -163868884 + FLAM_C SINE Alu 2 132 -1 239 288 99 0 chr3 54168275 54168386 -163868772 + L1MC/D LINE L1 5636 5757 -2051 1788 84 50 0 chr3 54168398 54168637 -163868521 + LTR8 LTR ERV1 1 251 -440 1781 160 0 0 chr3 54168756 54169044 -163868114 - AluSq SINE Alu -25 288 1 182 267 67 0 chr3 54169221 54169266 -163867892 + L2 LINE L2 3262 3309 -4 1077 130 0 19 chr3 54169480 54169642 -163867516 + AluSx SINE Alu 1 159 -153 225 94 0 0 chr3 54169643 54169675 -163867483 + (A)n Simple_repeat Simple_repeat 1 32 0 1587 175 35 7 chr3 54169890 54170175 -163866983 - AluJb SINE Alu -19 293 1 794 142 7 57 chr3 54170175 54170316 -163866842 - AluJo SINE Alu -176 136 3 2093 113 0 16 chr3 54171027 54171336 -163865822 - AluSq SINE Alu -9 304 1 621 136 9 27 chr3 54171404 54171514 -163865644 + FLAM_A SINE Alu 32 139 -3 483 319 8 28 chr3 54172578 54173077 -163864081 + C-rich Low_complexity Low_complexity 1 489 0 904 246 95 4 chr3 54174528 54174923 -163862235 - LTR33 LTR ERVL -23 498 1 424 221 196 44 chr3 54175436 54175594 -163861564 - MER5A DNA MER1_type -4 185 4 512 234 113 14 chr3 54175613 54175754 -163861404 + MER5B DNA MER1_type 1 155 -23 296 278 10 41 chr3 54176337 54176531 -163860627 + L1M4 LINE L1 2225 2412 -3734 545 274 5 39 chr3 54176568 54176593 -163860565 + L2 LINE L2 2440 2464 -850 1589 176 7 13 chr3 54176593 54176895 -163860263 - AluSq SINE Alu -13 300 1 545 274 5 39 chr3 54176895 54177077 -163860081 + L2 LINE L2 2464 2640 -674 378 328 80 10 chr3 54177161 54177362 -163859796 + L2 LINE L2 2830 3044 -269 1690 152 0 21 chr3 54177520 54177809 -163859349 + AluJo SINE Alu 1 283 -29 268 256 0 12 chr3 54177879 54177961 -163859197 - AluY SINE Alu -5 296 216 233 303 17 0 chr3 54177993 54178112 -163859046 + G-rich Low_complexity Low_complexity 2 122 0 205 210 56 35 chr3 54178241 54178384 -163858774 + (CGCGG)n Simple_repeat Simple_repeat 4 149 0 4617 60 25 0 chr3 54178899 54179470 -163857688 + LTR14C LTR ERVK 1 585 -2 423 207 52 0 chr3 54179935 54180051 -163857107 - AluSq/x SINE Alu -177 135 14 2287 84 0 38 chr3 54180494 54180814 -163856344 + AluSp SINE Alu 1 308 -5 186 197 84 28 chr3 54182111 54182182 -163854976 + L3 LINE CR1 1319 1393 -184 557 224 92 93 chr3 54183269 54183860 -163853298 + L1MC4a LINE L1 6738 7275 -538 * 1080 210 162 34 chr3 54183857 54183910 -163853248 + L1MD3 LINE L1 7590 7635 -360 2171 89 7 0 chr3 54183910 54184190 -163852968 + AluSp SINE Alu 1 282 -31 203 28 28 28 chr3 54184190 54184226 -163852932 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 1080 210 162 34 chr3 54184226 54184523 -163852635 + L1MD3 LINE L1 7635 7986 -9 244 169 34 68 chr3 54184510 54184526 -163852632 + AluSg/x SINE Alu 123 136 -166 1430 130 141 34 chr3 54184526 54184788 -163852370 + AluSx SINE Alu 1 290 -22 509 175 156 118 chr3 54184958 54185221 -163851937 - L1MC3 LINE L1 -802 6983 6711 414 0 0 0 chr3 54185300 54185346 -163851812 + (TG)n Simple_repeat Simple_repeat 1 46 0 2159 100 0 4 chr3 54185346 54185627 -163851531 - AluSq SINE Alu -33 280 1 1637 257 152 4 chr3 54185857 54186383 -163850775 + L2 LINE L2 2113 2716 -598 215 150 0 25 chr3 54186523 54186563 -163850595 + L2 LINE L2 2709 2747 -567 387 152 76 0 chr3 54187044 54187110 -163850048 + MLT1A2 LTR MaLR 1 71 -303 370 295 38 41 chr3 54187225 54187421 -163849737 + MLT1-int LTR MaLR 955 1081 -290 594 149 53 0 chr3 54187423 54187517 -163849641 - AluJ SINE Alu -14 298 200 1022 136 0 19 chr3 54187517 54187671 -163849487 - AluJ SINE Alu -161 151 1 297 192 27 27 chr3 54187678 54187751 -163849407 + MLT1-int LTR MaLR 1065 1137 -234 461 286 221 18 chr3 54187868 54188249 -163848909 - L1M4 LINE L1 -1734 4412 3955 1889 184 48 35 chr3 54188334 54188592 -163848566 - L1M4 LINE L1 -431 5753 5500 1650 164 0 4 chr3 54188592 54188854 -163848304 - AluJb SINE Alu -12 300 40 1889 184 48 35 chr3 54188854 54189015 -163848143 - L1M4 LINE L1 -684 5500 5325 2195 120 0 3 chr3 54189015 54189315 -163847843 - AluSx SINE Alu -13 299 1 1889 184 48 35 chr3 54189315 54189355 -163847803 - L1M4 LINE L1 -859 5325 5287 29 84 0 0 chr3 54189360 54189431 -163847727 + AT_rich Low_complexity Low_complexity 1 71 0 225 227 136 30 chr3 54189431 54189563 -163847595 - L1M4 LINE L1 -873 5273 5128 207 0 0 0 chr3 54189658 54189681 -163847477 + (T)n Simple_repeat Simple_repeat 1 23 0 1600 98 9 0 chr3 54189861 54190075 -163847083 + AluSg/x SINE Alu 97 312 0 217 220 34 0 chr3 54191320 54191379 -163845779 + (TA)n Simple_repeat Simple_repeat 1 61 0 1685 169 20 10 chr3 54191404 54191700 -163845458 - AluJb SINE Alu -13 299 1 515 133 0 57 chr3 54191705 54191810 -163845348 - L1MC2 LINE L1 -204 6140 6042 434 111 0 16 chr3 54191817 54191880 -163845278 + FRAM/FAM SINE Alu 6 67 -109 563 275 7 0 chr3 54191880 54192022 -163845136 - L1M4 LINE L1 -1387 4759 4617 * 1151 94 77 0 chr3 54192021 54192191 -163844967 - L1MC1 LINE L1 -273 6060 5878 826 186 5 43 chr3 54192200 54192388 -163844770 - FRAM SINE Alu 0 176 1 366 261 16 38 chr3 54192500 54192684 -163844474 + GA-rich Low_complexity Low_complexity 1 180 0 189 147 0 0 chr3 54192779 54192813 -163844345 + (GGA)n Simple_repeat Simple_repeat 1 34 0 284 170 0 0 chr3 54192936 54192998 -163844160 + Alu SINE Alu 252 301 -1 1152 149 0 0 chr3 54193427 54193601 -163843557 + AluSg/x SINE Alu 130 303 -9 278 306 79 48 chr3 54193605 54193896 -163843262 - L1M4 LINE L1 -1300 4846 4547 346 235 17 70 chr3 54194867 54194982 -163842176 + L2 LINE L2 3205 3313 0 1045 172 15 43 chr3 54195024 54195286 -163841872 + LTR54 LTR ERV1 167 478 -32 261 0 0 0 chr3 54195286 54195315 -163841843 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 447 278 71 18 chr3 54195891 54196060 -163841098 + MIR SINE MIR 82 259 -3 1727 157 4 0 chr3 54196910 54197165 -163839993 - AluSq SINE Alu -53 260 5 266 298 128 5 chr3 54197221 54197409 -163839749 + L1M4 LINE L1 3974 4184 -1962 1748 170 0 14 chr3 54197417 54197706 -163839452 + AluJb SINE Alu 15 299 -13 211 266 0 38 chr3 54200154 54200233 -163836925 + (CGGGG)n Simple_repeat Simple_repeat 4 79 0 29 60 0 0 chr3 54200285 54200335 -163836823 + GC_rich Low_complexity Low_complexity 1 50 0 2338 168 88 37 chr3 54200626 54201113 -163836045 - MLT2B1 LTR ERVL 0 520 9 1478 210 119 65 chr3 54202237 54202732 -163834426 + Charlie1b DNA MER1_type 2 523 0 207 0 0 0 chr3 54202764 54202787 -163834371 + (CAA)n Simple_repeat Simple_repeat 3 25 0 183 320 0 0 chr3 54202915 54202965 -163834193 + L2 LINE L2 3252 3301 -12 430 290 72 70 chr3 54202980 54203366 -163833792 - L2 LINE L2 -959 2355 1969 1687 154 21 21 chr3 54203447 54203733 -163833425 + AluJb SINE Alu 1 286 -26 1099 196 30 0 chr3 54203744 54203943 -163833215 - MER3 DNA MER1_type -4 205 1 28 0 0 0 chr3 54204061 54204089 -163833069 + AT_rich Low_complexity Low_complexity 1 28 0 970 177 41 0 chr3 54204095 54204242 -163832916 - FAM SINE Alu -19 156 4 1451 101 23 5 chr3 54204271 54204488 -163832670 + MER6 DNA MER2_type 641 861 -4 208 193 45 34 chr3 54204505 54204593 -163832565 + (TTATA)n Simple_repeat Simple_repeat 2 90 0 541 252 125 25 chr3 54206437 54206794 -163830364 - L1MC4 LINE L1 -1 8041 7530 382 128 244 0 chr3 54206838 54206924 -163830234 - L1MD3 LINE L1 -11 7984 7878 1317 226 40 70 chr3 54207443 54207706 -163829452 + L1M4 LINE L1 4428 4674 -1472 1993 139 0 3 chr3 54207706 54207990 -163829168 + AluSx SINE Alu 1 285 -27 207 100 0 0 chr3 54207990 54208020 -163829138 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 1317 226 40 70 chr3 54208030 54208212 -163828946 + L1M4 LINE L1 4674 4860 -1286 21 0 0 0 chr3 54208234 54208255 -163828903 + AT_rich Low_complexity Low_complexity 1 21 0 1617 137 0 34 chr3 54208453 54208715 -163828443 + AluSx SINE Alu 36 288 -24 1551 166 52 17 chr3 54208842 54209131 -163828027 - AluJo SINE Alu -10 302 4 547 257 20 7 chr3 54209136 54209288 -163827870 + L1M4 LINE L1 4849 5002 -1144 1753 153 0 47 chr3 54209293 54209594 -163827564 + AluSg SINE Alu 1 287 -23 198 0 0 0 chr3 54209594 54209616 -163827542 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 3482 135 23 16 chr3 54209616 54209849 -163827309 + L1MB2 LINE L1 5596 5826 -345 2313 84 27 0 chr3 54209849 54210145 -163827013 + AluSc SINE Alu 1 304 -5 3482 135 23 16 chr3 54210145 54210480 -163826678 + L1MB2 LINE L1 5826 6168 -3 1295 210 30 33 chr3 54210496 54210923 -163826235 + L1M4b LINE L1 961 1418 -5441 2516 213 62 0 chr3 54210945 54211442 -163825716 + MER68 LTR ERV1 21 548 -14 10042 161 44 22 chr3 54211447 54211699 -163825459 + L1MA5 LINE L1 3238 3483 -2817 222 37 0 0 chr3 54211699 54211726 -163825432 + (CAA)n Simple_repeat Simple_repeat 1 27 0 10042 161 44 22 chr3 54211726 54211769 -163825389 + L1MA5 LINE L1 3483 3524 -2776 695 239 0 0 chr3 54211769 54211899 -163825259 - FLAM_A SINE Alu -3 130 1 10042 161 44 22 chr3 54211899 54211922 -163825236 + L1MA5 LINE L1 3524 3545 -2755 1656 183 25 3 chr3 54211922 54212206 -163824952 - AluJo SINE Alu -22 290 1 10042 161 44 22 chr3 54212206 54214092 -163823066 + L1MA5 LINE L1 3545 5387 -913 2416 68 7 23 chr3 54214092 54214402 -163822756 - AluY SINE Alu -6 305 1 2308 96 0 10 chr3 54214402 54214705 -163822453 - AluSq SINE Alu -13 300 1 10042 161 44 22 chr3 54214705 54215490 -163821668 + L1MA5 LINE L1 5386 6300 0 754 251 11 6 chr3 54215488 54215663 -163821495 + L1MC5 LINE L1 6611 6786 -1175 * 1783 145 11 7 chr3 54215663 54215932 -163821226 + AluJo SINE Alu 27 296 -16 2565 221 28 12 chr3 54216037 54216708 -163820450 + L1M4b LINE L1 2940 3621 -3336 802 263 101 6 chr3 54216699 54217026 -163820132 + L1MEc LINE L1 708 1065 -5331 * 850 155 95 27 chr3 54217395 54217543 -163819615 + FRAM SINE Alu 4 161 -15 1028 284 37 34 chr3 54218846 54219226 -163817932 - LTR16C LTR ERVL -6 485 105 320 266 117 8 chr3 54219998 54220126 -163817032 + MIR SINE MIR 96 237 -25 576 42 0 0 chr3 54220252 54220323 -163816835 + (TG)n Simple_repeat Simple_repeat 2 72 0 1498 235 95 18 chr3 54221071 54221325 -163815833 + MLT2B1 LTR ERVL 1 297 -223 2293 118 125 8 chr3 54221325 54221708 -163815450 + MSTA LTR MaLR 1 428 0 1498 235 95 18 chr3 54221708 54221844 -163815314 + MLT2B1 LTR ERVL 297 421 -99 29 0 0 0 chr3 54222857 54222886 -163814272 + GC_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr3 54223300 54223338 -163813820 + AT_rich Low_complexity Low_complexity 1 38 0 1846 276 44 19 chr3 54223375 54223969 -163813189 + L1ME LINE L1 35 643 -5753 376 252 53 0 chr3 54224011 54224142 -163813016 + L1ME LINE L1 1258 1395 -4820 738 180 0 0 chr3 54224142 54224253 -163812905 + FRAM SINE Alu 26 136 -40 679 238 30 0 chr3 54224258 54224422 -163812736 + L1ME LINE L1 1595 1763 -4633 593 166 234 35 chr3 54224423 54224568 -163812590 - MER20 DNA MER1_type -5 214 41 444 217 104 0 chr3 54224589 54224704 -163812454 + L1ME LINE L1 1988 2114 -4282 1974 141 3 31 chr3 54224709 54225029 -163812129 + AluJb SINE Alu 1 311 -1 1579 187 14 27 chr3 54225035 54225329 -163811829 + AluJo SINE Alu 1 290 -22 242 239 30 0 chr3 54225329 54225396 -163811762 + L1ME LINE L1 3037 3105 -3110 315 122 0 0 chr3 54225413 54225462 -163811696 + (CA)n Simple_repeat Simple_repeat 2 50 0 820 172 0 37 chr3 54225470 54225604 -163811554 + FLAM_A SINE Alu 1 129 -4 1255 245 57 24 chr3 54225619 54226072 -163811086 + L1ME LINE L1 3140 3607 -2608 * 7266 107 16 8 chr3 54226059 54227031 -163810127 + L1MA2 LINE L1 5140 6126 -178 2431 40 24 10 chr3 54227031 54227329 -163809829 - AluY SINE Alu -9 302 1 7266 107 16 8 chr3 54227329 54227510 -163809648 + L1MA2 LINE L1 6126 6304 0 5738 248 47 27 chr3 54227513 54228171 -163808987 + L1ME LINE L1 3578 4221 -2014 195 42 0 0 chr3 54228171 54228195 -163808963 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 5738 248 47 27 chr3 54228195 54229606 -163807552 + L1ME LINE L1 4221 5687 -548 1125 208 77 6 chr3 54229579 54229649 -163807509 + L1 LINE L1 5126 5190 -1025 * 2091 136 3 0 chr3 54229649 54229950 -163807208 + AluSx SINE Alu 3 304 -8 1125 208 77 6 chr3 54229950 54230192 -163806966 + L1 LINE L1 5190 5460 -755 278 186 0 0 chr3 54230603 54230662 -163806496 + L2 LINE L2 2043 2101 -1213 1869 188 28 33 chr3 54230706 54230718 -163806440 - MER65C LTR ERV1 -12 659 648 2337 88 10 3 chr3 54230718 54231026 -163806132 + AluSx SINE Alu 1 310 -2 1869 188 28 33 chr3 54231026 54231455 -163805703 - MER65C LTR ERV1 -23 648 1 684 205 157 6 chr3 54231456 54231622 -163805536 + L2 LINE L2 3123 3313 0 2187 94 0 39 chr3 54231693 54232002 -163805156 + AluSq SINE Alu 1 297 -16 249 340 50 0 chr3 54232030 54232130 -163805028 - L2 LINE L2 -6 3266 3162 333 0 0 0 chr3 54233514 54233551 -163803607 + (CA)n Simple_repeat Simple_repeat 1 37 0 184 214 57 86 chr3 54233707 54233777 -163803381 + MIR SINE MIR 28 95 -167 1301 256 186 24 chr3 54234302 54234922 -163802236 + L1MC4a LINE L1 5291 6010 -1798 2135 133 0 3 chr3 54235314 54235615 -163801543 + AluSc SINE Alu 1 300 -9 471 292 21 7 chr3 54235802 54235946 -163801212 + L1ME LINE L1 5659 5804 -386 613 222 78 0 chr3 54236362 54236529 -163800629 - MIR SINE MIR -2 260 81 1801 164 25 0 chr3 54237705 54238000 -163799158 + AluJo SINE Alu 1 302 0 206 153 34 0 chr3 54238313 54238362 -163798796 - MIR SINE MIR -39 169 116 181 286 44 22 chr3 54238547 54238638 -163798520 + L2 LINE L2 1819 1911 -1403 2269 82 10 14 chr3 54239171 54239464 -163797694 - AluY SINE Alu -19 292 1 2323 90 0 7 chr3 54239465 54239764 -163797394 - AluSc SINE Alu -12 297 1 381 243 132 7 chr3 54240413 54240557 -163796601 - L1ME4a LINE L1 0 6121 5960 299 282 0 0 chr3 54240784 54240862 -163796296 - L1ME4a LINE L1 -476 5645 5568 24 91 0 0 chr3 54240966 54241032 -163796126 + AT_rich Low_complexity Low_complexity 1 66 0 309 268 213 31 chr3 54241412 54241699 -163795459 - L1ME4a LINE L1 -1550 4596 4258 303 289 84 49 chr3 54241707 54242039 -163795119 - L1MC/D LINE L1 -478 5643 5333 21 0 0 0 chr3 54242098 54242119 -163795039 + AT_rich Low_complexity Low_complexity 1 21 0 2325 102 0 0 chr3 54242223 54242516 -163794642 - AluSx SINE Alu -19 293 1 624 179 0 9 chr3 54242631 54242743 -163794415 - FLAM_A SINE Alu -22 120 10 248 311 0 0 chr3 54242844 54242934 -163794224 + L1P LINE L1 4924 5013 -1133 22 0 0 0 chr3 54243014 54243036 -163794122 + AT_rich Low_complexity Low_complexity 1 22 0 7634 198 56 20 chr3 54243662 54243790 -163793368 - L1MB8 LINE L1 -1 6177 6055 2485 66 3 3 chr3 54243790 54244092 -163793066 + AluY SINE Alu 1 302 -9 7634 198 56 20 chr3 54244092 54244919 -163792239 - L1MB8 LINE L1 -123 6055 5260 1826 161 4 0 chr3 54244919 54245192 -163791966 - AluJo SINE Alu -36 276 3 7634 198 56 20 chr3 54245192 54246044 -163791114 - L1MB8 LINE L1 -918 5260 4441 523 244 16 16 chr3 54246044 54246171 -163790987 - FLAM_A SINE Alu -6 127 1 7634 198 56 20 chr3 54246171 54246462 -163790696 - L1MB8 LINE L1 -1737 4441 4162 1416 160 28 94 chr3 54246462 54246780 -163790378 - AluJb SINE Alu -15 297 1 7634 198 56 20 chr3 54246780 54247444 -163789714 - L1MB8 LINE L1 -2016 4162 3304 235 355 81 24 chr3 54247445 54247775 -163789383 - L2 LINE L2 -237 3035 2690 2251 103 0 0 chr3 54248127 54248444 -163788714 - AluSx SINE Alu 0 317 1 223 254 68 0 chr3 54248905 54248964 -163788194 - MIR3 SINE MIR -15 193 131 2181 99 3 7 chr3 54252126 54252420 -163784738 + AluSq SINE Alu 1 293 -20 808 144 8 0 chr3 54252507 54252639 -163784519 + FLAM_C SINE Alu 1 133 0 27 29 0 0 chr3 54252639 54252673 -163784485 + AT_rich Low_complexity Low_complexity 1 34 0 262 197 0 66 chr3 54253122 54253183 -163783975 + MER2 DNA MER2_type 15 71 -274 225 214 0 0 chr3 54253214 54253256 -163783902 + MER2 DNA MER2_type 304 345 0 1769 185 0 20 chr3 54253810 54254112 -163783046 - AluJo SINE Alu -16 296 1 207 0 0 0 chr3 54257313 54257336 -163779822 + (CTG)n Simple_repeat Simple_repeat 1 23 0 351 0 0 0 chr3 54260175 54260214 -163776944 + (TG)n Simple_repeat Simple_repeat 1 39 0 2194 96 0 4 chr3 54260214 54260495 -163776663 - AluSq SINE Alu -33 280 1 1506 260 150 2 chr3 54260737 54261256 -163775902 + L2 LINE L2 2121 2716 -598 332 234 106 11 chr3 54261395 54261489 -163775669 + L2 LINE L2 2709 2811 -503 504 245 255 7 chr3 54261504 54261802 -163775356 + L2 LINE L2 2918 3289 -24 273 224 12 35 chr3 54262611 54262696 -163774462 - MIR3 SINE MIR -43 165 83 338 207 85 0 chr3 54262703 54262785 -163774373 - L2 LINE L2 0 3272 3184 305 266 13 0 chr3 54263176 54263255 -163773903 + MIR SINE MIR 71 150 -112 230 344 11 0 chr3 54263738 54263831 -163773327 + MIR3 SINE MIR 112 205 -3 2251 167 36 14 chr3 54265001 54265039 -163772119 - MSTA LTR MaLR 0 428 392 2358 81 0 3 chr3 54265039 54265352 -163771806 + AluSp SINE Alu 1 312 0 2251 167 36 14 chr3 54265352 54265731 -163771427 - MSTA LTR MaLR -36 392 1 1237 146 190 37 chr3 54265770 54266038 -163771120 - AluJo SINE Alu -3 309 1 277 180 0 0 chr3 54266354 54266404 -163770754 - L2 LINE L2 -1 3312 3263 512 275 0 0 chr3 54266548 54266668 -163770490 + MER94 DNA DNA 15 134 0 437 231 29 0 chr3 54267077 54267181 -163769977 - L2 LINE L2 -11 3302 3196 207 0 0 0 chr3 54267227 54267250 -163769908 + (T)n Simple_repeat Simple_repeat 1 23 0 1660 172 34 78 chr3 54267463 54267871 -163769287 - MLT1B LTR MaLR 0 390 1 267 293 71 71 chr3 54268383 54268407 -163768751 + L1MC/D LINE L1 5538 5561 -2247 1878 181 0 0 chr3 54268407 54268699 -163768459 - AluJb SINE Alu -20 292 1 267 293 71 71 chr3 54268699 54268913 -163768245 + L1MC/D LINE L1 5560 5776 -2032 2218 106 0 10 chr3 54268983 54269284 -163767874 + AluSx SINE Alu 1 298 -14 1432 140 54 0 chr3 54269296 54269574 -163767584 + L1MA8 LINE L1 5999 6291 0 2580 54 0 0 chr3 54270042 54270339 -163766819 + AluY SINE Alu 1 297 -14 2148 76 94 4 chr3 54270702 54270979 -163766179 + AluSq SINE Alu 1 302 -11 556 244 92 32 chr3 54272529 54272746 -163764412 + L1ME4a LINE L1 5628 5857 -264 702 188 44 12 chr3 54272798 54272958 -163764200 + L1ME4a LINE L1 5957 6121 0 207 327 39 0 chr3 54273031 54273135 -163764023 + MIR SINE MIR 34 141 -121 644 279 68 9 chr3 54273433 54273655 -163763503 + MIR SINE MIR 5 239 -23 355 322 55 33 chr3 54273883 54274066 -163763092 - MLT1L LTR MaLR -172 443 257 249 292 196 8 chr3 54274338 54274469 -163762689 - MIR SINE MIR -46 162 7 306 351 54 24 chr3 54275313 54275399 -163761759 + L2 LINE L2 233 315 -2999 2308 110 0 22 chr3 54275399 54275717 -163761441 - AluSx SINE Alu 0 312 2 246 81 0 0 chr3 54275717 54275754 -163761404 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 1614 101 0 5 chr3 54275754 54275961 -163761197 - AluSq SINE Alu -30 283 78 306 351 54 24 chr3 54275961 54276077 -163761081 + L2 LINE L2 314 443 -2871 829 234 0 0 chr3 54276121 54276296 -163760862 + FRAM SINE Alu 1 173 -3 2149 194 55 64 chr3 54277060 54277605 -163759553 - MLT2B3 LTR ERVL -14 540 1 849 152 0 36 chr3 54278210 54278348 -163758810 - FLAM_C SINE Alu 0 133 1 2323 98 7 7 chr3 54278590 54278896 -163758262 + AluSx SINE Alu 1 306 -6 1055 276 66 19 chr3 54278896 54279306 -163757852 + L1MEd LINE L1 18 446 -5673 1716 281 45 20 chr3 54279582 54280176 -163756982 + L1MEc LINE L1 246 854 -5753 349 260 55 0 chr3 54280218 54280345 -163756813 + L1MEc LINE L1 1469 1602 -4824 405 186 34 119 chr3 54280473 54280591 -163756567 + MSTA LTR MaLR 263 423 -5 9876 127 7 45 chr3 54280598 54280967 -163756191 + MSTA-int LTR MaLR 3 384 -1196 2404 68 41 0 chr3 54280967 54281261 -163755897 - AluY SINE Alu -5 306 1 9876 127 7 45 chr3 54281261 54282531 -163754627 + MSTA-int LTR MaLR 384 1580 0 1433 162 255 14 chr3 54282531 54282876 -163754282 + MSTA LTR MaLR 1 428 0 2376 68 0 4 chr3 54283156 54283466 -163753692 + AluY SINE Alu 1 309 0 2594 43 7 0 chr3 54283476 54283779 -163753379 + AluY SINE Alu 1 305 -6 5905 107 20 5 chr3 54283780 54284748 -163752410 - L1MA2 LINE L1 -182 6122 5140 1222 242 59 23 chr3 54284746 54285188 -163751970 - L1MEc LINE L1 -2618 3597 3140 * 761 181 0 36 chr3 54285199 54285337 -163751821 - FLAM_A SINE Alu 0 133 1 315 122 0 0 chr3 54285345 54285394 -163751764 + (TG)n Simple_repeat Simple_repeat 2 50 0 235 239 30 0 chr3 54285411 54285478 -163751680 - L1MEc LINE L1 -3110 3105 3037 1484 196 14 34 chr3 54285478 54285774 -163751384 - AluJo SINE Alu -22 290 1 1992 141 3 31 chr3 54285780 54286100 -163751058 - AluJb SINE Alu -1 311 1 436 217 104 0 chr3 54286105 54286220 -163750938 - L1MEc LINE L1 -4282 2114 1988 592 159 234 35 chr3 54286241 54286386 -163750772 + MER20 DNA MER1_type 41 214 -5 333 292 23 35 chr3 54286387 54286558 -163750600 - L1MEc LINE L1 -4633 1763 1595 715 274 83 0 chr3 54287115 54287319 -163749839 + MER58A DNA MER1_type 4 224 0 305 266 65 91 chr3 54287495 54287691 -163749467 + MLT1L LTR MaLR 16 206 -409 282 138 77 0 chr3 54287691 54287756 -163749402 - MLT1H LTR MaLR 0 549 480 199 241 37 19 chr3 54288184 54288238 -163748920 + L2 LINE L2 3253 3307 -6 2359 43 20 36 chr3 54290321 54290622 -163746536 + AluY SINE Alu 4 299 -12 252 292 42 0 chr3 54291843 54291915 -163745243 - L2 LINE L2 -8 3264 3190 189 250 0 17 chr3 54293068 54293128 -163744030 + L2 LINE L2 3194 3252 -20 207 100 0 0 chr3 54293134 54293164 -163743994 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 546 268 60 12 chr3 54293612 54293714 -163743444 - MIR SINE MIR -5 257 161 2330 103 3 0 chr3 54293714 54294026 -163743132 - AluSp SINE Alu 0 313 1 546 268 60 12 chr3 54294026 54294112 -163743046 - MIR SINE MIR -101 161 63 840 224 45 45 chr3 54294534 54294757 -163742401 + MER58A DNA MER1_type 2 224 0 208 320 25 35 chr3 54294856 54295023 -163742135 - MIR3 SINE MIR 0 262 115 186 43 0 0 chr3 54295123 54295146 -163742012 + (TTTTTG)n Simple_repeat Simple_repeat 1 23 0 318 200 205 96 chr3 54295163 54295578 -163741580 - L1ME4a LINE L1 -3 6118 5659 819 176 7 27 chr3 54295853 54296001 -163741157 - AluJb SINE Alu -15 297 153 2361 83 0 7 chr3 54296335 54296636 -163740522 - AluSq SINE Alu -14 299 1 351 277 130 27 chr3 54296786 54297086 -163740072 - L1ME4a LINE L1 -2216 5592 5262 23 0 0 0 chr3 54297434 54297457 -163739701 + AT_rich Low_complexity Low_complexity 1 23 0 1481 163 33 83 chr3 54297494 54297559 -163739599 - AluJo SINE Alu -21 291 224 2298 91 10 7 chr3 54297559 54297857 -163739301 - AluSp SINE Alu -14 299 1 1481 163 33 83 chr3 54297857 54298092 -163739066 - AluJo SINE Alu -88 224 6 228 255 65 152 chr3 54298447 54298678 -163738480 + L2 LINE L2 2607 2817 -497 2081 127 0 23 chr3 54299118 54299425 -163737733 - AluY SINE Alu -11 300 1 5617 142 13 98 chr3 54299425 54300395 -163736763 - L1PB1 LINE L1 -117 6750 5699 2639 64 0 0 chr3 54300395 54300706 -163736452 - AluY SINE Alu 0 311 1 1384 137 43 5 chr3 54300709 54300920 -163736238 - AluSq SINE Alu -14 299 81 5617 142 13 98 chr3 54300920 54302012 -163735146 - L1PB1 LINE L1 -1170 5697 4691 7155 43 0 1 chr3 54302017 54302870 -163734288 - L1PA3 LINE L1 -2 6153 5302 * 10925 26 15 2 chr3 54302859 54304141 -163733017 + L1PA3 LINE L1 4001 5299 -847 7772 156 55 15 chr3 54304139 54304173 -163732985 - L1PB1 LINE L1 -2157 4705 4674 * 2186 132 0 7 chr3 54304173 54304483 -163732675 - AluSq SINE Alu -5 308 1 7772 156 55 15 chr3 54304483 54307307 -163729851 - L1PB1 LINE L1 -2188 4674 1729 857 159 185 21 chr3 54307307 54307496 -163729662 - MER41C LTR ERV1 -115 439 220 2001 138 3 14 chr3 54307502 54307793 -163729365 - AluSq SINE Alu -25 288 1 2118 96 11 18 chr3 54307809 54308125 -163729033 - AluSg SINE Alu 0 317 4 272 216 11 59 chr3 54308126 54308252 -163728906 - LTR48B LTR ERV1 -394 148 4 1902 183 56 14 chr3 54308296 54308651 -163728507 + MER92B LTR ERV1 1 370 -266 1715 108 23 19 chr3 54308664 54308922 -163728236 + MLT2B3 LTR ERVL 1 259 -295 992 254 41 19 chr3 54309167 54309435 -163727723 + MER41E LTR ERV1 239 512 0 1496 194 12 0 chr3 54309435 54309683 -163727475 + MLT2B2 LTR ERVL 262 512 -3 300 298 18 18 chr3 54309690 54309804 -163727354 + MER92B LTR ERV1 369 482 -154 * 739 170 7 15 chr3 54309800 54309935 -163727223 + MER66B LTR ERV1 96 229 -257 514 210 43 162 chr3 54309961 54310337 -163726821 + MER65A LTR ERV1 1 331 -114 * 1339 145 29 19 chr3 54310333 54310567 -163726591 + LTR15 LTR ERV1 259 595 0 275 229 59 59 chr3 54310569 54310687 -163726471 + MER65A LTR ERV1 328 445 0 542 129 7 163 chr3 54310687 54310834 -163726324 + MER92B LTR ERV1 513 636 0 2225 181 63 7 chr3 54310854 54311312 -163725846 - MER66B LTR ERV1 -2 484 1 1195 128 5 16 chr3 54311985 54312173 -163724985 - MER66B LTR ERV1 -200 286 101 615 225 160 0 chr3 54312325 54312512 -163724646 - MIR SINE MIR 0 262 46 238 297 79 10 chr3 54314108 54314209 -163722949 + L3 LINE CR1 701 808 -769 19141 109 42 21 chr3 54314557 54316517 -163720641 + Tigger3(Golem) DNA MER2_type 1 2047 -982 2243 83 3 35 chr3 54316517 54316829 -163720329 + AluSg SINE Alu 1 302 -8 19141 109 42 21 chr3 54316829 54317834 -163719324 + Tigger3(Golem) DNA MER2_type 2047 3029 0 449 240 150 15 chr3 54318744 54318944 -163718214 + MIR SINE MIR 27 253 -9 369 223 270 24 chr3 54319314 54319525 -163717633 + LTR33 LTR ERVL 3 265 -256 352 318 101 52 chr3 54319989 54320297 -163716861 + L2 LINE L2 2949 3271 -1 224 290 130 0 chr3 54320529 54320629 -163716529 - MIR3 SINE MIR -9 199 87 700 259 99 25 chr3 54322075 54322318 -163714840 + MIR SINE MIR 2 262 0 185 0 0 39 chr3 54322797 54322823 -163714335 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2436 105 16 35 chr3 54323491 54323796 -163713362 + THE1B LTR MaLR 1 299 -65 2610 44 3 0 chr3 54323796 54324091 -163713067 - AluY SINE Alu -15 296 1 2436 105 16 35 chr3 54324091 54324156 -163713002 + THE1B LTR MaLR 299 364 0 321 135 0 0 chr3 54324307 54324359 -163712799 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 1357 161 273 12 chr3 54328208 54328530 -163708628 + MSTA LTR MaLR 23 428 0 2301 101 14 0 chr3 54328810 54329106 -163708052 + AluY SINE Alu 1 300 -11 188 152 0 0 chr3 54329307 54329340 -163707818 + L2 LINE L2 2944 2976 -337 342 253 27 62 chr3 54329597 54329743 -163707415 - MIR SINE MIR -66 196 56 240 259 24 47 chr3 54329971 54330056 -163707102 + MIR3 SINE MIR 100 182 -26 765 141 16 8 chr3 54330429 54330550 -163706608 - LTR12 LTR ERV1 -234 480 359 307 239 0 0 chr3 54330551 54330622 -163706536 - LTR30 LTR ERV1 -99 623 553 1277 93 111 76 chr3 54330623 54330848 -163706310 - LTR12 LTR ERV1 -429 285 53 251 250 0 0 chr3 54330848 54330900 -163706258 - LTR30 LTR ERV1 -670 52 1 4507 125 2 0 chr3 54330903 54331543 -163705615 - HERV9 LTR ERV1 -2 8397 7757 * 35666 110 21 20 chr3 54331539 54337297 -163699861 - HERV9 LTR ERV1 -3415 4984 55 776 136 48 75 chr3 54337272 54337419 -163699739 - pTR5 LTR ERV1 -1994 444 302 * 340 219 36 63 chr3 54337408 54337519 -163699639 - LTR30 LTR ERV1 -80 642 375 * 1272 125 161 2 chr3 54337519 54337760 -163699398 - LTR12 LTR ERV1 -421 2017 57 226 269 0 0 chr3 54337760 54337812 -163699346 - LTR30 LTR ERV1 -670 52 1 1804 153 180 14 chr3 54337946 54338313 -163698845 - MSTA LTR MaLR 0 428 1 191 329 0 0 chr3 54339025 54339107 -163698051 - L2 LINE L2 -63 3250 3169 263 290 29 36 chr3 54339158 54339296 -163697862 - L2 LINE L2 -160 3112 2976 212 0 36 0 chr3 54339538 54339566 -163697592 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1867 146 18 0 chr3 54339567 54339842 -163697316 - AluJb SINE Alu -32 280 1 826 223 30 5 chr3 54340069 54340271 -163696887 - MIR SINE MIR 0 262 56 217 314 43 29 chr3 54340253 54340393 -163696765 - L2 LINE L2 -851 2463 2322 * 263 309 78 15 chr3 54341657 54341853 -163695305 - MIR SINE MIR -17 245 38 340 224 63 28 chr3 54343272 54343415 -163693743 - Charlie7 DNA MER1_type -7 2605 2458 377 162 22 232 chr3 54344970 54345019 -163692139 - MLT2C1 LTR ERVL 0 397 339 207 0 0 0 chr3 54345019 54345042 -163692116 + (TG)n Simple_repeat Simple_repeat 1 23 0 377 162 22 232 chr3 54345042 54345087 -163692071 - MLT2C1 LTR ERVL -58 339 286 2205 141 0 0 chr3 54345087 54345393 -163691765 + AluSx SINE Alu 1 306 -6 377 162 22 232 chr3 54345393 54345556 -163691602 - MLT2C1 LTR ERVL -111 286 188 1607 184 34 3 chr3 54345557 54345921 -163691237 - AluJo SINE Alu 0 373 1 644 186 152 39 chr3 54345923 54346127 -163691031 - MLT2C1 LTR ERVL -170 227 1 1809 170 10 0 chr3 54346282 54346570 -163690588 - AluSx SINE Alu -21 291 1 2477 77 13 0 chr3 54347350 54347650 -163689508 - AluY SINE Alu -7 304 1 1433 162 255 14 chr3 54347930 54348275 -163688883 - MSTA LTR MaLR 0 428 1 10230 120 7 43 chr3 54348275 54349543 -163687615 - MSTA-int LTR MaLR 0 1580 383 2404 68 41 0 chr3 54349543 54349837 -163687321 + AluY SINE Alu 1 306 -5 10230 120 7 43 chr3 54349837 54350205 -163686953 - MSTA-int LTR MaLR -1197 383 3 1659 171 145 18 chr3 54350207 54350587 -163686571 - MSTA LTR MaLR 0 428 1 551 223 58 8 chr3 54351336 54351457 -163685701 - MLT2B1 LTR ERVL -99 421 295 2068 125 125 10 chr3 54351472 54351856 -163685302 - MSTA LTR MaLR 0 428 1 286 318 151 12 chr3 54352496 54352754 -163684404 - L2 LINE L2 -6 3307 3014 2290 105 0 7 chr3 54352908 54353213 -163683945 - AluSx SINE Alu -9 303 1 202 27 0 54 chr3 54354723 54354760 -163682398 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 893 163 56 51 chr3 54354766 54354944 -163682214 - AluJo SINE Alu -30 282 104 1743 161 44 7 chr3 54354947 54355245 -163681913 + AluSq SINE Alu 3 311 -2 327 212 41 20 chr3 54355248 54355394 -163681764 + GA-rich Low_complexity Low_complexity 4 152 0 327 190 0 0 chr3 54355410 54355468 -163681690 - FLAM_A SINE Alu -33 100 43 228 235 0 0 chr3 54357640 54357691 -163679467 - MIR3 SINE MIR 0 208 158 22 0 0 0 chr3 54360243 54360265 -163676893 + AT_rich Low_complexity Low_complexity 1 22 0 513 141 0 0 chr3 54360457 54360556 -163676602 + (TG)n Simple_repeat Simple_repeat 2 100 0 2481 75 0 3 chr3 54360678 54360985 -163676173 + AluY SINE Alu 1 306 -5 1924 157 0 7 chr3 54362223 54362510 -163674648 - AluJb SINE Alu -13 299 15 257 294 52 36 chr3 54362512 54362706 -163674452 - L1M4 LINE L1 -1976 4170 3974 2308 72 0 4 chr3 54362761 54363067 -163674091 + AluY SINE Alu 5 309 0 2318 70 27 0 chr3 54363077 54363376 -163673782 + AluYb8 SINE Alu 1 307 -11 3188 165 98 38 chr3 54363406 54364071 -163673087 - MER67C LTR ERV1 -5 705 1 2209 125 3 0 chr3 54364097 54364408 -163672750 - AluSx SINE Alu 0 312 1 333 159 0 0 chr3 54364538 54364601 -163672557 + (TA)n Simple_repeat Simple_repeat 1 63 0 21 0 0 0 chr3 54364689 54364710 -163672448 + AT_rich Low_complexity Low_complexity 1 21 0 270 267 38 53 chr3 54364754 54364885 -163672273 - MIR3 SINE MIR -19 189 61 202 27 0 54 chr3 54365437 54365474 -163671684 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 893 163 56 51 chr3 54365480 54365658 -163671500 - AluJo SINE Alu -30 282 104 1743 161 44 7 chr3 54365661 54365959 -163671199 + AluSq SINE Alu 3 311 -2 327 212 41 20 chr3 54365962 54366108 -163671050 + GA-rich Low_complexity Low_complexity 4 152 0 327 190 0 0 chr3 54366124 54366182 -163670976 - FLAM_A SINE Alu -33 100 43 199 227 0 0 chr3 54368647 54368691 -163668467 - MIR3 SINE MIR -1 207 164 501 147 0 0 chr3 54369444 54369553 -163667605 + (G)n Simple_repeat Simple_repeat 1 109 0 25 51 0 0 chr3 54369562 54369601 -163667557 + GC_rich Low_complexity Low_complexity 1 39 0 33 0 0 0 chr3 54369713 54369746 -163667412 + GC_rich Low_complexity Low_complexity 1 33 0 440 293 72 6 chr3 54369989 54370170 -163666988 + MIR SINE MIR 20 212 -50 236 313 87 4 chr3 54371062 54371208 -163665950 + MIR SINE MIR 31 193 -60 268 278 45 15 chr3 54371251 54371384 -163665774 + L1MC4a LINE L1 7219 7355 -453 458 249 60 27 chr3 54371387 54371572 -163665586 + L1MC5 LINE L1 7301 7491 -470 618 191 40 0 chr3 54371724 54371850 -163665308 + L1MD2 LINE L1 4817 4947 -1199 3917 189 68 23 chr3 54371857 54373000 -163664158 + L1MD2 LINE L1 5062 6230 -12 544 249 125 25 chr3 54373043 54373400 -163663758 + L1MC4 LINE L1 7530 8041 -1 288 219 175 69 chr3 54374547 54374793 -163662365 + L1ME LINE L1 5536 5807 -314 257 0 0 29 chr3 54375014 54375048 -163662110 + (TG)n Simple_repeat Simple_repeat 2 34 0 347 220 8 76 chr3 54375219 54375351 -163661807 - L1ME4a LINE L1 -32 6089 5967 530 211 45 64 chr3 54376395 54376494 -163660664 + MER5B DNA MER1_type 1 97 -81 1750 161 7 23 chr3 54376494 54376799 -163660359 + AluJb SINE Alu 3 302 -10 530 211 45 64 chr3 54376799 54376855 -163660303 + MER5B DNA MER1_type 97 153 -25 450 209 82 93 chr3 54376875 54377057 -163660101 - MER5A DNA MER1_type 0 189 10 2456 150 44 79 chr3 54377865 54378345 -163658813 - LTR32 LTR ERVL 0 471 9 287 247 24 0 chr3 54379299 54379384 -163657774 + MIR SINE MIR 65 151 -57 301 221 73 0 chr3 54379413 54379481 -163657677 - L2 LINE L2 -31 3241 3169 24 41 0 20 chr3 54379777 54379798 -163657360 + AT_rich Low_complexity Low_complexity 1 21 -27 2308 103 0 0 chr3 54379798 54380090 -163657068 + AluSx SINE Alu 1 292 -20 24 41 0 20 chr3 54380090 54380117 -163657041 + AT_rich Low_complexity Low_complexity 21 48 0 2058 105 20 7 chr3 54381340 54381635 -163655523 - AluSq SINE Alu -14 299 1 2110 123 3 26 chr3 54381635 54381943 -163655215 - AluSx SINE Alu -10 302 1 1027 220 34 0 chr3 54382819 54383055 -163654103 - MIR SINE MIR -11 251 8 270 313 39 23 chr3 54386365 54386493 -163650665 - MIR SINE MIR -63 145 16 2001 129 42 7 chr3 54386653 54386805 -163650353 - AluSx SINE Alu -15 297 152 2157 110 34 0 chr3 54386805 54387096 -163650062 - AluSg SINE Alu -9 301 1 2001 129 42 7 chr3 54387096 54387230 -163649928 - AluSx SINE Alu -160 152 1 181 286 0 0 chr3 54387738 54387787 -163649371 - MER5B DNA MER1_type -129 49 1 313 238 0 11 chr3 54387806 54387937 -163649221 + MER5B DNA MER1_type 1 178 0 29 60 0 0 chr3 54390017 54390067 -163647091 + AT_rich Low_complexity Low_complexity 1 50 0 230 191 0 0 chr3 54390154 54390201 -163646957 - HAL1b LINE L1 -551 797 751 1014 242 219 61 chr3 54390259 54391076 -163646082 - HAL1 LINE L1 -362 2145 1200 339 337 59 39 chr3 54391547 54391802 -163645356 - HAL1 LINE L1 -2116 391 132 2283 86 0 17 chr3 54391812 54392113 -163645045 - AluSq SINE Alu -17 296 1 600 252 155 4 chr3 54392178 54392436 -163644722 + L1ME4a LINE L1 5601 5897 -224 281 136 0 0 chr3 54392527 54392571 -163644587 + L1ME4a LINE L1 6072 6115 -6 300 259 74 19 chr3 54393326 54393434 -163643724 - MIR SINE MIR 0 262 149 910 252 265 4 chr3 54393784 54394256 -163642902 - L1MC4a LINE L1 -1914 5894 5300 21 0 0 0 chr3 54394376 54394397 -163642761 + AT_rich Low_complexity Low_complexity 1 21 0 843 263 78 0 chr3 54394775 54394980 -163642178 - MER58A DNA MER1_type 0 224 4 2098 145 3 0 chr3 54395827 54396138 -163641020 + AluSx SINE Alu 1 312 0 355 272 67 84 chr3 54396341 54396621 -163640537 - MLT1J LTR MaLR -71 460 230 2005 139 36 0 chr3 54396651 54397000 -163640158 - AluSx SINE Alu 0 360 1 228 309 22 66 chr3 54397310 54397398 -163639760 + MIR SINE MIR 18 99 -163 2037 18 0 0 chr3 54397398 54397621 -163639537 - AluYa5 SINE Alu -7 304 82 228 309 22 66 chr3 54397621 54397668 -163639490 + MIR SINE MIR 99 147 -115 2551 60 0 0 chr3 54398250 54398548 -163638610 + AluY SINE Alu 1 298 -13 859 114 8 8 chr3 54398571 54398702 -163638456 - L1PB1 LINE L1 -3 6148 6018 252 0 0 0 chr3 54398840 54398868 -163638290 + (TA)n Simple_repeat Simple_repeat 1 28 0 2191 125 3 0 chr3 54398998 54399309 -163637849 + AluSx SINE Alu 1 312 0 3366 163 97 37 chr3 54399335 54400005 -163637153 + MER67C LTR ERV1 1 710 0 2255 89 0 10 chr3 54400032 54400335 -163636823 - AluY SINE Alu -11 300 1 23 0 0 0 chr3 54400348 54400371 -163636787 + AT_rich Low_complexity Low_complexity 1 23 0 589 163 0 0 chr3 54400418 54400504 -163636654 + FLAM_C SINE Alu 37 122 -21 552 68 0 0 chr3 54400527 54400600 -163636558 + (GGAA)n Simple_repeat Simple_repeat 4 76 0 759 205 8 0 chr3 54400726 54400853 -163636305 + AluJb SINE Alu 161 288 -24 701 246 101 11 chr3 54400864 54401043 -163636115 + MIR SINE MIR 66 260 -2 2483 77 0 0 chr3 54401130 54401430 -163635728 - AluSp SINE Alu -13 300 1 24 0 0 0 chr3 54401430 54401454 -163635704 + AT_rich Low_complexity Low_complexity 1 24 0 262 213 0 66 chr3 54401830 54401891 -163635267 + MER2 DNA MER2_type 15 71 -274 2928 127 46 92 chr3 54403717 54403936 -163633222 + THE1-int LTR MaLR 152 379 -1201 2379 68 41 0 chr3 54403936 54404230 -163632928 - AluY SINE Alu -5 306 1 2928 127 46 92 chr3 54404230 54404686 -163632472 + THE1-int LTR MaLR 379 796 -784 2253 110 3 0 chr3 54405339 54405639 -163631519 - AluSx SINE Alu -11 301 1 228 151 38 0 chr3 54405912 54405965 -163631193 + L1MC4 LINE L1 7936 8041 -1 180 0 0 0 chr3 54409346 54409366 -163627792 + (A)n Simple_repeat Simple_repeat 1 20 0 208 139 0 0 chr3 54410226 54410262 -163626896 + (T)n Simple_repeat Simple_repeat 1 36 0 833 159 0 0 chr3 54410718 54410844 -163626314 + AluSg/x SINE Alu 173 298 -14 1372 183 10 33 chr3 54411248 54411548 -163625610 - AluJb SINE Alu -17 295 3 337 396 122 10 chr3 54411809 54412112 -163625046 + L2 LINE L2 2927 3263 -9 1339 182 71 37 chr3 54412490 54412606 -163624552 + AluJo SINE Alu 1 112 -200 318 26 0 0 chr3 54412606 54412645 -163624513 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1339 182 71 37 chr3 54412645 54412825 -163624333 + AluJo SINE Alu 112 307 -5 923 160 26 0 chr3 54413112 54413268 -163623890 - AluJb SINE Alu -16 296 137 606 241 139 23 chr3 54413618 54413809 -163623349 - MIR SINE MIR -8 254 34 2257 100 0 0 chr3 54413809 54414110 -163623048 - AluSx SINE Alu -11 301 1 606 241 139 23 chr3 54414110 54414134 -163623024 - MIR SINE MIR -228 34 14 696 252 25 0 chr3 54415053 54415212 -163621946 - MIR SINE MIR -9 253 91 470 298 82 23 chr3 54415872 54416043 -163621115 - MIR3 SINE MIR 0 208 28 200 192 19 39 chr3 54417096 54417148 -163620010 + (TATG)n Simple_repeat Simple_repeat 2 52 0 294 224 0 53 chr3 54417543 54417619 -163619539 + L1MC4a LINE L1 5827 5898 -1910 1754 181 3 3 chr3 54417762 54418054 -163619104 - AluJb SINE Alu -20 292 1 264 208 223 77 chr3 54420312 54420442 -163616716 + MIR SINE MIR 46 194 -68 260 317 65 32 chr3 54421222 54421405 -163615753 - MIR SINE MIR -43 219 30 713 128 0 0 chr3 54421501 54421595 -163615563 - AluS SINE Alu -216 96 3 1097 154 62 1 chr3 54421595 54421875 -163615283 - L1MC/D LINE L1 -748 5398 5185 438 267 169 19 chr3 54421890 54422156 -163615002 - L1MC4a LINE L1 -1860 5948 5643 2187 119 3 13 chr3 54422162 54422473 -163614685 + AluSx SINE Alu 1 308 -4 411 170 142 9 chr3 54422648 54422739 -163614419 + FLAM_A SINE Alu 19 127 -184 697 152 0 0 chr3 54422739 54422851 -163614307 + L1MA3 LINE L1 6194 6305 0 411 170 142 9 chr3 54422851 54422865 -163614293 + FLAM_A SINE Alu 127 138 -173 1072 209 44 20 chr3 54422873 54423170 -163613988 + MER20B DNA MER1_type 438 741 -42 755 233 20 0 chr3 54423174 54423324 -163613834 + FRAM SINE Alu 1 153 -23 294 224 0 53 chr3 54424158 54424234 -163612924 + L1MC4a LINE L1 5827 5898 -1910 2023 140 0 0 chr3 54424377 54424669 -163612489 - AluSx SINE Alu -20 292 1 663 179 0 9 chr3 54424784 54424896 -163612262 - FLAM_A SINE Alu -22 120 10 255 311 0 0 chr3 54424996 54425086 -163612072 + L1P LINE L1 4924 5013 -1133 22 0 0 0 chr3 54425166 54425188 -163611970 + AT_rich Low_complexity Low_complexity 1 22 0 2104 161 15 42 chr3 54425816 54425945 -163611213 - L1MB8 LINE L1 -1 6177 6046 2477 63 3 3 chr3 54425945 54426247 -163610911 + AluY SINE Alu 1 302 -9 2104 161 15 42 chr3 54426247 54426526 -163610632 - L1MB8 LINE L1 -132 6046 5780 1141 177 167 54 chr3 54426649 54426943 -163610215 - MLT1A1 LTR MaLR -38 327 1 236 167 24 0 chr3 54427281 54427323 -163609835 + L2 LINE L2 3251 3293 -20 992 259 123 26 chr3 54427362 54427783 -163609375 + MLT1C LTR MaLR 6 467 0 1051 145 0 0 chr3 54427951 54428110 -163609048 + FAM SINE Alu 1 43 -6 366 209 12 0 chr3 54428119 54428205 -163608953 + HERVL68 LTR ERVL 722 808 -2229 1185 189 5 0 chr3 54428306 54428507 -163608651 - AluSx SINE Alu -110 202 1 1440 89 51 13 chr3 54428578 54428896 -163608262 + Tigger7 DNA MER2_type 2233 2586 -1 604 251 99 0 chr3 54428907 54429078 -163608080 - MER5A DNA MER1_type 0 189 2 276 278 72 10 chr3 54429110 54429207 -163607951 - L2 LINE L2 -2 3311 3209 239 284 59 0 chr3 54429207 54429309 -163607849 + L1M4 LINE L1 4713 4820 -1326 2434 71 0 13 chr3 54429478 54429788 -163607370 + AluY SINE Alu 3 308 -3 1810 164 13 3 chr3 54430154 54430458 -163606700 - AluJo SINE Alu -5 307 1 2207 116 3 0 chr3 54430702 54430995 -163606163 - AluSq SINE Alu -19 294 1 289 280 47 0 chr3 54431513 54431620 -163605538 + L2 LINE L2 2092 2203 -1111 2410 138 40 11 chr3 54431661 54432038 -163605120 + MER61D LTR ERV1 114 501 0 257 220 51 0 chr3 54432166 54432225 -163604933 + MER61D-int LTR ERV1 221 282 -6714 1859 150 16 103 chr3 54432350 54432798 -163604360 + MER61D-int LTR ERV1 193 601 -4616 1123 139 64 0 chr3 54432898 54433070 -163604088 - Charlie3 DNA MER1_type -2527 183 1 363 247 11 0 chr3 54433071 54433160 -163603998 + MIR SINE MIR 165 254 -8 217 211 0 0 chr3 54433352 54433390 -163603768 + polypyrimidine Low_complexity Low_complexity 4 41 0 344 276 123 53 chr3 54433603 54433904 -163603254 + L1M4 LINE L1 4111 4432 -1714 2086 113 0 35 chr3 54433977 54434288 -163602870 + AluY SINE Alu 1 300 -11 212 193 18 0 chr3 54434294 54434351 -163602807 + (TTATA)n Simple_repeat Simple_repeat 5 62 0 2009 145 0 13 chr3 54434577 54434880 -163602278 - AluJo SINE Alu -13 299 1 729 196 0 38 chr3 54435264 54435397 -163601761 + FLAM_A SINE Alu 1 128 -5 2037 125 3 30 chr3 54435405 54435709 -163601449 + AluSx SINE Alu 5 300 -12 2622 150 17 2 chr3 54436009 54436415 -163600743 - LOR1a LTR ERV1 0 497 86 326 284 0 85 chr3 54436520 54436582 -163600576 - L2 LINE L2 -985 2329 2284 2457 70 0 0 chr3 54436582 54436884 -163600274 + AluY SINE Alu 1 302 -9 326 284 0 85 chr3 54436884 54436962 -163600196 - L2 LINE L2 -1030 2284 2201 2225 97 7 10 chr3 54436962 54437272 -163599886 + AluSc SINE Alu 1 309 0 1173 142 19 9 chr3 54437277 54437609 -163599549 - MER61D LTR ERV1 0 501 143 12905 119 35 25 chr3 54437617 54440949 -163596209 - MER61D-int LTR ERV1 0 6015 1934 3519 156 40 6 chr3 54440951 54441665 -163595493 - MER61D-int LTR ERV1 -3576 2381 1407 1657 115 3 5 chr3 54441657 54441954 -163595204 - MER61D-int LTR ERV1 -4377 2644 609 * 3741 101 125 17 chr3 54442054 54442708 -163594450 + MER51A-int LTR ERV1 4800 5524 -2596 1310 115 0 5 chr3 54442698 54442890 -163594268 + MER51A-int LTR ERV1 5801 5991 -2129 * 1706 264 34 17 chr3 54442964 54443645 -163593513 + MER51A-int LTR ERV1 5893 7816 0 2266 98 6 55 chr3 54443647 54444021 -163593137 + MER51A LTR ERV1 1 446 -188 526 82 55 0 chr3 54444017 54444090 -163593068 + MER51A LTR ERV1 558 634 0 * 394 288 64 80 chr3 54444108 54444497 -163592661 - MLT1J LTR MaLR 0 511 129 364 228 58 116 chr3 54444590 54444936 -163592222 + L1ME4a LINE L1 5794 6119 -2 639 218 82 0 chr3 54445631 54445778 -163591380 - MIR SINE MIR -56 206 48 180 131 16 148 chr3 54447392 54447453 -163589705 + L2 LINE L2 3218 3270 -2 2053 135 0 7 chr3 54447865 54448162 -163588996 + AluSx SINE Alu 1 295 -17 1536 143 130 26 chr3 54448248 54448555 -163588603 + MER44D DNA MER2_type 1 609 0 249 251 126 52 chr3 54449101 54449292 -163587866 - L2 LINE L2 -11 3302 3098 930 155 21 48 chr3 54449446 54449633 -163587525 - Tigger1 DNA MER2_type -2 2416 2235 479 69 69 0 chr3 54449618 54449690 -163587468 + Tigger1 DNA MER2_type 1564 1640 -778 * 10425 95 40 36 chr3 54449686 54450451 -163586707 - Tigger1 DNA MER2_type -169 2249 1489 2067 137 0 3 chr3 54450451 54450750 -163586408 - AluJb SINE Alu -14 298 1 10425 95 40 36 chr3 54450750 54451234 -163585924 - Tigger1 DNA MER2_type -929 1489 989 1916 138 0 4 chr3 54451234 54451502 -163585656 + AluJb SINE Alu 37 303 -9 10425 95 40 36 chr3 54451502 54451870 -163585288 - Tigger1 DNA MER2_type -1429 989 624 2475 53 3 0 chr3 54451974 54452274 -163584884 - AluY SINE Alu -10 301 1 2187 88 10 30 chr3 54452274 54452578 -163584580 - AluSx SINE Alu -13 299 1 28 0 0 0 chr3 54452583 54452611 -163584547 + AT_rich Low_complexity Low_complexity 1 28 0 2260 103 0 0 chr3 54454895 54455186 -163581972 - AluSc SINE Alu -18 291 1 2005 125 10 17 chr3 54455278 54455574 -163581584 - AluSx SINE Alu -18 294 1 1357 102 6 0 chr3 54455738 54455914 -163581244 - AluSc SINE Alu -132 177 1 2018 118 10 17 chr3 54456006 54456302 -163580856 - AluSx SINE Alu -18 294 1 1944 201 57 23 chr3 54456425 54456902 -163580256 - L1ME3 LINE L1 -3 6159 5667 2090 134 10 3 chr3 54456952 54457251 -163579907 - AluSx SINE Alu -11 301 1 232 239 0 75 chr3 54457330 54457397 -163579761 + MIR SINE MIR 7 68 -194 228 203 14 43 chr3 54457508 54457577 -163579581 - L1MD3 LINE L1 0 7995 7929 3225 243 105 65 chr3 54457658 54458166 -163578992 - L1M4b LINE L1 -5546 1313 827 1966 113 3 25 chr3 54458166 54458448 -163578710 - AluSx SINE Alu -31 281 6 3225 243 105 65 chr3 54458448 54459114 -163578044 - L1M4b LINE L1 -6032 827 83 2610 58 0 0 chr3 54459114 54459424 -163577734 - AluY SINE Alu -1 310 1 3225 243 105 65 chr3 54459424 54459508 -163577650 - L1M4b LINE L1 -6776 83 4 945 263 70 0 chr3 54459517 54459776 -163577382 - L2 LINE L2 -609 2705 2429 1423 57 68 0 chr3 54459876 54460053 -163577105 - AluY SINE Alu -122 189 1 2127 188 51 43 chr3 54460056 54460232 -163576926 + L1ME2 LINE L1 5220 5393 -771 2472 107 42 79 chr3 54460232 54460662 -163576496 + MLT2D LTR ERVL 1 414 0 2127 188 51 43 chr3 54460662 54460823 -163576335 + L1ME2 LINE L1 5393 5551 -613 2205 106 0 0 chr3 54460823 54461131 -163576027 + AluSx SINE Alu 1 308 0 2127 188 51 43 chr3 54461131 54461355 -163575803 + L1ME2 LINE L1 5551 5786 -378 2238 104 7 7 chr3 54461355 54461654 -163575504 + AluSx SINE Alu 1 299 -13 2127 188 51 43 chr3 54461654 54461710 -163575448 + L1ME2 LINE L1 5786 5840 -324 229 65 0 0 chr3 54461719 54461750 -163575408 + MER3 DNA MER1_type 16 46 -163 289 221 151 0 chr3 54461753 54461839 -163575319 + L1ME2 LINE L1 6052 6150 -14 949 223 56 17 chr3 54461999 54462232 -163574926 + L1ME LINE L1 5510 5751 -415 762 164 79 26 chr3 54463547 54463699 -163573459 - MER3 DNA MER1_type 0 209 50 1009 165 29 110 chr3 54464094 54464140 -163573018 - L1MC4a LINE L1 -445 7363 7315 2201 69 44 0 chr3 54464140 54464414 -163572744 - AluSp SINE Alu -14 299 14 1009 165 29 110 chr3 54464414 54464512 -163572646 - L1MC4a LINE L1 -493 7315 7249 2429 81 10 0 chr3 54464512 54464820 -163572338 - AluY SINE Alu 0 311 1 1009 165 29 110 chr3 54464820 54464947 -163572211 - L1MC4a LINE L1 -559 7249 7113 1716 213 101 28 chr3 54464948 54465412 -163571746 - MLT1D LTR MaLR 0 505 8 1401 193 108 34 chr3 54465421 54465667 -163571491 - L1MC4a LINE L1 -694 7114 6827 1909 163 0 0 chr3 54465667 54465962 -163571196 - AluJb SINE Alu -17 295 1 1401 193 108 34 chr3 54465962 54466103 -163571055 - L1MC4a LINE L1 -981 6827 6698 479 225 99 0 chr3 54466416 54466527 -163570631 - MER5B DNA MER1_type 0 178 57 220 239 0 60 chr3 54466533 54466600 -163570558 + MER5B DNA MER1_type 4 66 -112 2649 99 75 43 chr3 54466650 54466714 -163570444 - MSTC LTR MaLR 0 428 367 1675 188 10 3 chr3 54466714 54467007 -163570151 - AluJo SINE Alu -17 295 1 2649 99 75 43 chr3 54467007 54467357 -163569801 - MSTC LTR MaLR -61 367 1 2622 208 84 77 chr3 54467363 54467622 -163569536 - MSTC-int LTR MaLR -6 1645 1389 2013 130 0 23 chr3 54467622 54467921 -163569237 - AluSx SINE Alu -20 292 1 2622 208 84 77 chr3 54467921 54468454 -163568704 - MSTC-int LTR MaLR -262 1389 847 944 336 9 130 chr3 54468812 54469151 -163568007 - AluSq SINE Alu -5 298 1 2121 113 20 0 chr3 54469265 54469558 -163567600 + AluSg SINE Alu 1 299 -11 1450 199 54 38 chr3 54470083 54470455 -163566703 - MLT1D LTR MaLR 0 505 133 2176 108 6 16 chr3 54470550 54470865 -163566293 + AluSx SINE Alu 1 312 0 2084 177 41 17 chr3 54470866 54471284 -163565874 - L1MD3 LINE L1 -906 7089 6662 401 200 165 9 chr3 54471286 54471401 -163565757 - MER94 DNA DNA -1 133 1 2114 90 38 7 chr3 54471406 54471695 -163565463 + AluSg SINE Alu 1 298 -12 946 151 0 19 chr3 54471922 54472081 -163565077 - FAM SINE Alu -4 45 1 429 241 68 84 chr3 54472255 54472492 -163564666 + L1MC4a LINE L1 5701 5933 -1875 196 321 95 24 chr3 54472918 54473002 -163564156 + L2 LINE L2 3156 3245 -27 1666 264 119 8 chr3 54473003 54473762 -163563396 - L1ME3A LINE L1 -35 6129 5269 2131 118 0 37 chr3 54473894 54474216 -163562942 - AluSx SINE Alu -2 310 1 1065 279 94 45 chr3 54474296 54474975 -163562183 - L2 LINE L2 -11 3302 2590 2210 127 54 82 chr3 54474998 54475439 -163561719 - MSTB1 LTR MaLR 0 432 4 21 0 0 0 chr3 54475617 54475638 -163561520 + AT_rich Low_complexity Low_complexity 1 21 0 520 215 41 110 chr3 54475960 54476027 -163561131 - MIR SINE MIR -18 244 174 2146 72 41 17 chr3 54476027 54476318 -163560840 - AluY SINE Alu -13 298 1 520 215 41 110 chr3 54476318 54476469 -163560689 - MIR SINE MIR -88 174 41 2430 61 14 0 chr3 54477793 54478086 -163559072 + AluY SINE Alu 1 297 -14 279 276 45 52 chr3 54479523 54479697 -163557461 - L1ME3A LINE L1 -1596 4550 4377 2086 133 10 3 chr3 54479697 54480006 -163557152 - AluSx SINE Alu 0 312 2 279 276 45 52 chr3 54480006 54480099 -163557059 - L1ME3A LINE L1 -1769 4377 4285 768 261 128 36 chr3 54480109 54480296 -163556862 - L1ME3A LINE L1 -2196 3950 3782 1666 181 36 10 chr3 54480296 54480600 -163556558 - AluJb SINE Alu 0 312 1 768 261 128 36 chr3 54480600 54481373 -163555785 - L1ME3A LINE L1 -2364 3782 2676 461 71 14 0 chr3 54481498 54481568 -163555590 + (TA)n Simple_repeat Simple_repeat 2 72 0 3030 126 22 2 chr3 54481575 54482037 -163555121 - MER6A DNA MER2_type 0 605 135 1443 136 0 5 chr3 54482039 54482253 -163554905 - AluSg/x SINE Alu -18 294 82 382 222 78 0 chr3 54482255 54482345 -163554813 - MER6A DNA MER2_type -508 97 1 362 286 84 35 chr3 54482347 54482547 -163554611 - L1ME3A LINE L1 -3674 2472 2246 2222 73 55 0 chr3 54482547 54482836 -163554322 - AluSc SINE Alu -4 305 1 362 286 84 35 chr3 54482836 54482981 -163554177 - L1ME3A LINE L1 -3900 2246 2110 1490 204 88 37 chr3 54483035 54483526 -163553632 - L1M4 LINE L1 -1200 4946 4431 2190 105 3 3 chr3 54483579 54483874 -163553284 - AluSq SINE Alu -18 295 1 254 299 26 26 chr3 54483997 54484074 -163553084 - MIR SINE MIR -184 78 2 387 353 12 12 chr3 54484133 54484300 -163552858 - MIR3 SINE MIR -24 184 18 1691 191 7 7 chr3 54484646 54484949 -163552209 - AluJo SINE Alu 0 312 10 691 236 31 16 chr3 54485260 54485457 -163551701 + Tigger3(Golem) DNA MER2_type 1 3009 -20 2241 89 0 10 chr3 54485458 54485751 -163551407 + AluSc SINE Alu 1 290 -19 2099 96 11 4 chr3 54486649 54486929 -163550229 - AluSx SINE Alu -18 294 13 559 158 0 0 chr3 54487029 54487105 -163550053 + AluJ/FRAM SINE Alu 214 289 -23 618 198 267 6 chr3 54487125 54487297 -163549861 - MIR SINE MIR -31 231 15 1887 162 0 3 chr3 54487760 54488063 -163549095 - AluJb SINE Alu -5 307 6 1231 140 0 0 chr3 54488904 54489083 -163548075 - AluJ SINE Alu -14 298 120 560 128 0 0 chr3 54489093 54489179 -163547979 - AluY SINE Alu 0 309 224 1103 47 0 8 chr3 54489179 54489307 -163547851 - AluY SINE Alu -141 170 44 828 197 0 0 chr3 54489310 54489442 -163547716 - AluJ SINE Alu -169 133 2 1194 236 0 23 chr3 54489470 54489728 -163547430 - MER21B LTR ERV1 -69 794 543 481 68 0 0 chr3 54490301 54490360 -163546798 - AluSc SINE Alu -15 294 236 26 0 0 0 chr3 54490493 54490519 -163546639 + AT_rich Low_complexity Low_complexity 1 26 0 1993 109 0 75 chr3 54491751 54492071 -163545087 - AluSx SINE Alu -16 296 1 2026 138 14 0 chr3 54494591 54494887 -163542271 - AluSx SINE Alu -12 300 1 1084 202 6 0 chr3 54495567 54495740 -163541418 + FAM SINE Alu 1 174 -1 22 0 0 0 chr3 54496148 54496170 -163540988 + AT_rich Low_complexity Low_complexity 1 22 0 229 313 121 20 chr3 54496354 54496453 -163540705 + MIR SINE MIR 45 153 -109 217 299 162 13 chr3 54496959 54497113 -163540045 + MIR SINE MIR 86 262 0 565 165 0 0 chr3 54497375 54497460 -163539698 + FRAM/FAM SINE Alu 1 82 -94 2229 79 4 0 chr3 54497477 54497782 -163539376 - AluSg SINE Alu 0 306 1 1530 102 0 0 chr3 54497957 54498162 -163538996 - AluSq SINE Alu -6 307 103 25 0 0 0 chr3 54498275 54498300 -163538858 + AT_rich Low_complexity Low_complexity 1 25 0 411 199 112 83 chr3 54498755 54498996 -163538162 - L1MC/D LINE L1 -812 5547 5297 917 216 0 33 chr3 54499244 54499425 -163537733 + AluJo SINE Alu 1 175 -137 2156 125 0 0 chr3 54499466 54499754 -163537404 + AluSx SINE Alu 1 288 -24 360 313 45 52 chr3 54499764 54499831 -163537327 - L1MC/D LINE L1 -1314 4832 4766 189 74 0 0 chr3 54499831 54499858 -163537300 + (TAATG)n Simple_repeat Simple_repeat 4 30 0 360 313 45 52 chr3 54499858 54499923 -163537235 - L1MC/D LINE L1 -1380 4766 4702 1777 164 0 25 chr3 54499923 54500241 -163536917 - AluJo SINE Alu -2 310 1 360 313 45 52 chr3 54500241 54500375 -163536783 - L1MC/D LINE L1 -1444 4702 4567 180 294 118 24 chr3 54500909 54500994 -163536164 + MIR3 SINE MIR 82 174 -34 2381 81 3 0 chr3 54501045 54501340 -163535818 + AluSq SINE Alu 1 296 -17 189 0 0 0 chr3 54501759 54501780 -163535378 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 2125 120 3 3 chr3 54502384 54502683 -163534475 + AluSx SINE Alu 1 299 -13 1087 145 6 17 chr3 54503094 54503273 -163533885 - AluSg/x SINE Alu -7 303 127 2065 106 40 10 chr3 54503298 54503599 -163533559 - AluSx SINE Alu -2 310 1 1856 169 0 7 chr3 54503987 54504289 -163532869 - AluSx SINE Alu -9 303 4 653 291 79 70 chr3 54504781 54505225 -163531933 - MLT1K LTR MaLR -12 576 129 39898 74 7 13 chr3 54505891 54510009 -163527149 - L1PA6 LINE L1 0 6154 2077 6440 75 18 36 chr3 54510009 54511745 -163525413 - SVA Other Other -552 1381 82 39898 74 7 13 chr3 54511745 54513802 -163523356 - L1PA6 LINE L1 -4077 2077 9 495 273 59 63 chr3 54513815 54514053 -163523105 + Charlie8 DNA MER1_type 51 287 -2130 233 139 23 0 chr3 54514119 54514162 -163522996 - MLT1K LTR MaLR -37 551 508 1775 183 0 0 chr3 54514411 54514715 -163522443 - AluJb SINE Alu 0 304 1 242 298 119 0 chr3 54515898 54515982 -163521176 + L2 LINE L2 3169 3262 -10 206 338 12 0 chr3 54516593 54516673 -163520485 - L2 LINE L2 0 3313 3233 394 255 59 83 chr3 54516710 54516914 -163520244 - L2 LINE L2 0 3313 3115 1977 146 16 10 chr3 54517326 54517634 -163519524 - AluJb SINE Alu -2 310 1 2315 99 3 0 chr3 54518411 54518704 -163518454 + AluSp SINE Alu 1 294 -19 2477 59 0 0 chr3 54518732 54519018 -163518140 + AluY SINE Alu 2 287 -24 245 210 16 0 chr3 54519018 54519080 -163518078 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 316 202 32 43 chr3 54519081 54519175 -163517983 + L1MC4 LINE L1 6612 6704 -1338 790 88 62 0 chr3 54519175 54519482 -163517676 + (TA)n Simple_repeat Simple_repeat 1 326 0 191 381 105 17 chr3 54521370 54521664 -163515494 - L2 LINE L2 -8 3264 2945 217 355 66 38 chr3 54521782 54521965 -163515193 - L2 LINE L2 -701 2613 2426 2162 120 17 0 chr3 54522165 54522464 -163514694 + AluSx SINE Alu 1 304 -8 384 180 90 22 chr3 54522555 54522644 -163514514 + MIR SINE MIR 77 171 -91 1207 106 0 33 chr3 54522644 54522824 -163514334 - Charlie3 DNA MER1_type -4 2706 2533 243 236 36 0 chr3 54523072 54523127 -163514031 - L1MD3 LINE L1 -1327 6668 6612 249 234 0 0 chr3 54523128 54523192 -163513966 + (TA)n Simple_repeat Simple_repeat 2 65 0 2204 114 3 16 chr3 54523990 54524296 -163512862 + AluSx SINE Alu 1 302 -10 2359 66 0 10 chr3 54524619 54524921 -163512237 + AluY SINE Alu 3 301 -10 262 54 0 27 chr3 54525071 54525108 -163512050 - MADE1 DNA Mariner -44 36 1 4187 123 31 36 chr3 54525108 54525806 -163511352 - L1MA7 LINE L1 -198 6093 5399 2185 116 3 25 chr3 54526184 54526502 -163510656 - AluSx SINE Alu -1 311 1 534 185 139 19 chr3 54526800 54526908 -163510250 - FLAM_A SINE Alu -12 121 1 2371 74 0 3 chr3 54526920 54527216 -163509942 - AluY SINE Alu -6 305 11 411 255 194 30 chr3 54527437 54527700 -163509458 - L1MD3 LINE L1 -2247 5561 5256 24 0 0 0 chr3 54528988 54529012 -163508146 + AT_rich Low_complexity Low_complexity 1 24 0 317 365 76 14 chr3 54529253 54529464 -163507694 + MIR SINE MIR 37 260 -2 291 204 10 122 chr3 54529804 54529902 -163507256 - MER5A DNA MER1_type -77 112 26 501 173 63 31 chr3 54531096 54531223 -163505935 + MER65A LTR ERV1 1 131 -314 270 316 30 63 chr3 54531314 54531583 -163505575 + MER65A LTR ERV1 186 445 0 2205 120 7 3 chr3 54531985 54532285 -163504873 + AluSx SINE Alu 3 303 -9 1101 238 9 0 chr3 54532363 54532577 -163504581 + MER58A DNA MER1_type 9 224 0 739 188 6 44 chr3 54534652 54534833 -163502325 - Charlie2 DNA MER1_type -1 2861 2688 873 127 0 0 chr3 54534833 54534951 -163502207 + AluJb SINE Alu 1 118 -194 32 0 0 0 chr3 54534955 54534987 -163502171 + AT_rich Low_complexity Low_complexity 1 32 0 1780 203 180 42 chr3 54534995 54535733 -163501425 - Charlie2 DNA MER1_type -161 2701 1862 1571 197 0 14 chr3 54536472 54536762 -163500396 + AluJo SINE Alu 1 286 -26 303 195 253 0 chr3 54538779 54538866 -163498292 - L2 LINE L2 -5 3308 3200 1772 203 86 19 chr3 54538869 54539297 -163497861 - L1MB8 LINE L1 -341 5837 5381 1298 198 89 32 chr3 54539290 54539595 -163497563 + L1MB7 LINE L1 5786 6113 -71 * 2117 112 39 0 chr3 54539595 54539880 -163497278 + AluSx SINE Alu 1 296 -16 1298 198 89 32 chr3 54539880 54539912 -163497246 + L1MB7 LINE L1 6113 6142 -42 266 203 0 58 chr3 54539935 54540004 -163497154 + L1MEd LINE L1 103 167 -5952 1433 174 78 62 chr3 54540112 54540496 -163496662 - MLT1B LTR MaLR 0 390 1 1377 166 85 105 chr3 54540515 54540973 -163496185 - LTR7 LTR ERV1 0 450 2 2436 129 18 27 chr3 54540974 54541423 -163495735 - HERVH LTR ERV1 0 7713 7269 * 7093 108 6 6 chr3 54541409 54543424 -163493734 - HERVH LTR ERV1 -1816 5275 3065 2208 129 0 66 chr3 54543524 54543950 -163493208 - HERVH LTR ERV1 -5660 2053 1656 1860 151 22 0 chr3 54543958 54544236 -163492922 + AluJb SINE Alu 5 288 -24 857 191 12 31 chr3 54544252 54544414 -163492744 + AluJb SINE Alu 138 296 -16 238 323 32 57 chr3 54544538 54544696 -163492462 - L2 LINE L2 -43 3229 3076 260 175 0 0 chr3 54544878 54544918 -163492240 + MIR SINE MIR 112 151 -57 2169 113 0 14 chr3 54544951 54545243 -163491915 - AluSg1 SINE Alu -21 288 1 2500 72 7 0 chr3 54545558 54545862 -163491296 - AluSp SINE Alu -7 306 1 224 134 37 61 chr3 54546722 54546804 -163490354 + (CGGGG)n Simple_repeat Simple_repeat 4 83 0 30 0 0 0 chr3 54546834 54546864 -163490294 + GC_rich Low_complexity Low_complexity 1 30 0 928 101 89 6 chr3 54547620 54547778 -163489380 - MER30 DNA MER1_type -56 174 4 240 325 0 50 chr3 54547780 54547860 -163489298 - MER91B DNA MER1_type -31 159 84 356 250 324 0 chr3 54548092 54548268 -163488890 + MIR SINE MIR 15 247 -15 2503 70 6 10 chr3 54550632 54550944 -163486214 - AluY SINE Alu 0 311 1 466 316 35 23 chr3 54551604 54551778 -163485380 - MIR SINE MIR -66 196 21 210 262 0 0 chr3 54551928 54551970 -163485188 - MIR3 SINE MIR -48 160 119 2616 138 21 44 chr3 54552549 54553077 -163484081 - L1MB7 LINE L1 -45 6139 5624 834 211 11 5 chr3 54553120 54553305 -163483853 + MLT1A2 LTR MaLR 189 374 0 1316 193 102 17 chr3 54553321 54553673 -163483485 + L1ME1 LINE L1 5780 6161 -5 557 286 131 22 chr3 54553701 54554107 -163483051 + L1ME3A LINE L1 5441 5890 -280 222 371 30 1 chr3 54554705 54554817 -163482341 - MIR SINE MIR -79 129 16 188 250 250 0 chr3 54555777 54555857 -163481301 - L2 LINE L2 0 3272 3173 184 301 0 60 chr3 54556400 54556483 -163480675 + MIR3 SINE MIR 97 174 -34 552 252 69 13 chr3 54556557 54556716 -163480442 - MIR SINE MIR -92 170 3 303 224 24 47 chr3 54556742 54556827 -163480331 - MIR3 SINE MIR -27 181 99 300 256 156 25 chr3 54557235 54557395 -163479763 - MIR3 SINE MIR -27 181 1 726 283 33 47 chr3 54557425 54557725 -163479433 + L1MC4a LINE L1 5545 5840 -1968 664 197 0 36 chr3 54557745 54557882 -163479276 + FLAM_C SINE Alu 2 133 0 1975 186 72 54 chr3 54559437 54559954 -163477204 - L1MC4 LINE L1 0 8042 7517 240 282 18 80 chr3 54560626 54560789 -163476369 - MIR3 SINE MIR -51 157 5 375 364 72 11 chr3 54561071 54561335 -163475823 + L1MC/D LINE L1 4883 5162 -984 587 274 91 79 chr3 54561422 54561595 -163475563 + L1MC/D LINE L1 5264 5433 -2375 1464 168 93 36 chr3 54561595 54561737 -163475421 + AluJo SINE Alu 1 133 -179 2078 128 26 3 chr3 54561737 54562041 -163475117 + AluSx SINE Alu 1 311 -1 1464 168 93 36 chr3 54562041 54562178 -163474980 + AluJo SINE Alu 133 296 -16 587 274 91 79 chr3 54562178 54562486 -163474672 + L1MC/D LINE L1 5433 5751 -2057 1549 157 0 0 chr3 54562516 54562751 -163474407 + AluJo SINE Alu 76 310 -2 261 83 0 0 chr3 54562804 54562840 -163474318 + (GA)n Simple_repeat Simple_repeat 1 36 0 2064 135 3 0 chr3 54563008 54563354 -163473804 - AluSx SINE Alu 0 347 1 852 255 38 49 chr3 54563361 54563808 -163473350 - L1MEd LINE L1 -4862 1257 816 261 0 0 0 chr3 54563810 54563839 -163473319 + (TC)n Simple_repeat Simple_repeat 2 30 0 198 0 0 0 chr3 54563838 54563860 -163473298 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 1251 120 0 0 chr3 54563879 54564046 -163473112 - AluSp SINE Alu -13 300 134 2403 72 0 20 chr3 54564046 54564350 -163472808 - AluY SINE Alu -13 298 1 1834 177 3 19 chr3 54564355 54564671 -163472487 - AluJb SINE Alu -1 311 1 423 253 125 80 chr3 54564679 54564968 -163472190 - L1MEd LINE L1 -5289 830 529 722 162 47 7 chr3 54565130 54565278 -163471880 - MER68 LTR ERV1 -89 473 320 1592 145 71 49 chr3 54565287 54565511 -163471647 - HERVL68 LTR ERVL -869 2168 1931 1641 187 50 0 chr3 54565511 54565789 -163471369 + AluJb SINE Alu 4 295 -17 1592 145 71 49 chr3 54565789 54565930 -163471228 - HERVL68 LTR ERVL -1106 1931 1795 1332 117 99 5 chr3 54565930 54566153 -163471005 - MSTC LTR MaLR 0 428 185 454 124 88 9 chr3 54566170 54566283 -163470875 - HERVL68 LTR ERVL -1874 1163 1042 653 207 35 7 chr3 54566855 54567000 -163470158 + MER5A DNA MER1_type 2 150 -39 498 204 98 8 chr3 54566999 54567131 -163470027 + MER5B DNA MER1_type 20 163 -15 * 518 182 126 49 chr3 54567349 54567492 -163469666 - AluSg/x SINE Alu -22 288 135 228 290 43 0 chr3 54567856 54567925 -163469233 + MIR SINE MIR 102 173 -89 272 290 60 10 chr3 54567953 54568053 -163469105 - MIR SINE MIR -70 192 88 279 221 283 0 chr3 54568451 54568564 -163468594 + MIR SINE MIR 98 242 -20 2179 115 14 0 chr3 54568920 54569208 -163467950 + AluSq SINE Alu 1 292 -21 252 305 0 0 chr3 54569486 54569545 -163467613 - MIR SINE MIR -8 254 196 447 283 158 68 chr3 54569558 54569912 -163467246 - L2 LINE L2 -2 3311 2926 2125 141 26 32 chr3 54571093 54571470 -163465688 - THE1C LTR MaLR 0 375 1 204 333 64 58 chr3 54572120 54572291 -163464867 + L2 LINE L2 1759 1930 -1384 1037 221 3 35 chr3 54572601 54572742 -163464416 - L1MC4 LINE L1 -1 8041 7912 261 0 0 0 chr3 54572742 54572771 -163464387 + (CA)n Simple_repeat Simple_repeat 2 30 0 1037 221 3 35 chr3 54572771 54572914 -163464244 - L1MC4 LINE L1 -130 7912 7766 450 69 0 0 chr3 54572922 54572980 -163464178 + Alu SINE Alu 1 58 -255 2400 98 0 25 chr3 54573082 54573400 -163463758 - AluSp SINE Alu -3 310 1 1758 251 76 19 chr3 54573449 54574147 -163463011 - L1MC4 LINE L1 -371 7671 6934 356 335 0 6 chr3 54574665 54574838 -163462320 + CT-rich Low_complexity Low_complexity 2 173 0 285 323 0 0 chr3 54574862 54575054 -163462104 + CT-rich Low_complexity Low_complexity 1 192 0 2348 97 0 3 chr3 54575743 54576043 -163461115 + AluSg SINE Alu 1 299 -11 1398 165 67 76 chr3 54576074 54576389 -163460769 + AluJo SINE Alu 1 312 0 308 184 10 143 chr3 54576511 54576609 -163460549 + L1MB7 LINE L1 6085 6169 -15 403 254 179 30 chr3 54576627 54576812 -163460346 - L1ME4a LINE L1 -11 6110 5954 2453 83 3 0 chr3 54576812 54577140 -163460018 - AluSp SINE Alu 0 329 1 403 254 179 30 chr3 54577140 54577288 -163459870 - L1ME4a LINE L1 -167 5954 5726 419 259 76 23 chr3 54577706 54577721 -163459437 + MIR SINE MIR 17 30 -232 2427 70 3 16 chr3 54577721 54578034 -163459124 - AluSg1 SINE Alu 0 309 1 419 259 76 23 chr3 54578034 54578149 -163459009 + MIR SINE MIR 30 154 -108 558 261 9 0 chr3 54578188 54578299 -163458859 - MER81 DNA DNA -2 112 1 2262 131 101 49 chr3 54578337 54578730 -163458428 - Charlie1 DNA MER1_type -2 2759 2331 2473 73 0 7 chr3 54578730 54579032 -163458126 + AluSc SINE Alu 1 300 -9 2262 131 101 49 chr3 54579032 54579164 -163457994 - Charlie1 DNA MER1_type -430 2331 2207 454 217 57 0 chr3 54579156 54579262 -163457896 - Charlie1 DNA MER1_type -2616 145 34 * 253 263 0 13 chr3 54579740 54579816 -163457342 + MIR SINE MIR 60 134 -128 223 331 150 8 chr3 54579954 54580081 -163457077 - MIR3 SINE MIR -63 145 1 619 243 86 16 chr3 54580385 54580745 -163456413 - MLT1F1 LTR MaLR 0 567 63 366 201 30 119 chr3 54581654 54581687 -163455471 - MIR SINE MIR -66 196 162 1989 164 0 3 chr3 54581687 54581985 -163455173 + AluJb SINE Alu 1 297 -15 366 201 30 119 chr3 54581985 54582085 -163455073 - MIR SINE MIR -100 162 75 685 189 23 15 chr3 54582708 54582840 -163454318 - FLAM_A SINE Alu 0 133 1 186 306 14 42 chr3 54582975 54583047 -163454111 + MER5A DNA MER1_type 1 70 -119 1982 94 12 0 chr3 54583147 54583403 -163453755 + AluSc SINE Alu 50 308 -1 386 338 35 44 chr3 54583720 54583842 -163453316 + L1M4 LINE L1 4098 4219 -1927 1224 215 48 0 chr3 54583842 54584070 -163453088 - MER8 DNA MER2_type 0 239 1 386 338 35 44 chr3 54584070 54584175 -163452983 + L1M4 LINE L1 4219 4323 -1823 214 306 0 0 chr3 54584269 54584318 -163452840 - L2 LINE L2 -3 3269 3221 619 228 51 13 chr3 54585030 54585188 -163451970 - MIR SINE MIR -52 210 47 2079 154 7 0 chr3 54585460 54585759 -163451399 - AluSx SINE Alu -11 301 1 180 0 0 0 chr3 54585759 54585779 -163451379 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2188 109 0 3 chr3 54585779 54586063 -163451095 - AluSq SINE Alu -30 283 1 352 262 106 57 chr3 54586785 54586926 -163450232 - MIR3 SINE MIR -31 177 30 191 36 36 0 chr3 54587169 54587197 -163449961 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 691 280 58 5 chr3 54587247 54587454 -163449704 - MIR SINE MIR -24 238 21 1374 147 0 45 chr3 54588056 54588280 -163448878 + AluJb SINE Alu 88 301 -11 258 106 0 0 chr3 54589153 54589200 -163447958 + (T)n Simple_repeat Simple_repeat 1 47 0 5095 190 101 48 chr3 54589272 54590680 -163446478 - L1M4c LINE L1 -5139 1507 8 371 263 292 3 chr3 54592211 54592523 -163444635 - L1MC/D LINE L1 -2111 5697 5296 2203 125 0 19 chr3 54592596 54592909 -163444249 - AluSx SINE Alu -5 307 1 308 282 97 10 chr3 54593193 54593296 -163443862 - L1MC/D LINE L1 -1299 4847 4736 414 274 75 49 chr3 54593360 54593757 -163443401 - L1MC/D LINE L1 -1489 4657 4250 396 297 214 7 chr3 54593828 54593973 -163443185 - MER5A DNA MER1_type -6 183 9 348 300 30 95 chr3 54594112 54594312 -163442846 - MIR3 SINE MIR -7 201 15 185 309 135 24 chr3 54595292 54595418 -163441740 - L3b LINE CR1 -241 1342 1203 303 218 90 13 chr3 54595689 54595767 -163441391 + L2 LINE L2 3184 3267 -5 201 39 0 0 chr3 54597604 54597630 -163439528 + (TG)n Simple_repeat Simple_repeat 2 27 0 317 250 77 32 chr3 54599238 54599394 -163437764 - L1ME4a LINE L1 0 6121 5959 1573 117 6 34 chr3 54599910 54600219 -163436939 - MER4A LTR ERV1 -43 621 263 319 69 375 14 chr3 54600219 54600291 -163436867 - MER4A LTR ERV1 -566 98 1 270 216 159 85 chr3 54600370 54600415 -163436743 - MLT2B1 LTR ERVL 0 520 480 258 32 0 0 chr3 54600415 54600446 -163436712 + (CA)n Simple_repeat Simple_repeat 2 32 0 * 339 44 0 0 chr3 54600445 54600490 -163436668 + (GA)n Simple_repeat Simple_repeat 2 46 0 270 216 159 85 chr3 54600446 54600515 -163436643 - MLT2B1 LTR ERVL -40 480 418 2409 97 0 0 chr3 54600515 54600814 -163436344 + AluSg SINE Alu 1 299 -11 270 216 159 85 chr3 54600814 54600987 -163436171 - MLT2B1 LTR ERVL -102 418 186 264 321 150 0 chr3 54601109 54601249 -163435909 - MER91A DNA MER1_type -34 162 2 385 259 46 56 chr3 54601786 54602002 -163435156 + MIR SINE MIR 14 227 -35 369 299 51 7 chr3 54602076 54602213 -163434945 - MIR SINE MIR -35 227 85 376 282 45 0 chr3 54602803 54602913 -163434245 + L2 LINE L2 3159 3273 -40 385 292 76 14 chr3 54603539 54603683 -163433475 + MIR SINE MIR 39 191 -71 236 199 0 221 chr3 54604874 54604915 -163432243 + MIR SINE MIR 42 90 -118 1960 134 0 38 chr3 54604915 54605228 -163431930 + AluJb SINE Alu 1 301 -11 236 199 0 221 chr3 54605228 54605322 -163431836 + MIR SINE MIR 90 147 -61 283 108 10 69 chr3 54605620 54605722 -163431436 + (CACCC)n Simple_repeat Simple_repeat 5 100 0 220 175 41 31 chr3 54605734 54605831 -163431327 + (CACAC)n Simple_repeat Simple_repeat 1 98 0 212 300 50 0 chr3 54606131 54606211 -163430947 + MIR SINE MIR 124 207 -55 394 330 122 22 chr3 54606709 54606979 -163430179 + L1MC4a LINE L1 5808 6104 -1704 190 333 115 0 chr3 54607421 54607499 -163429659 - L2 LINE L2 -19 3294 3208 240 210 70 153 chr3 54607513 54607982 -163429176 + MER5A DNA MER1_type 17 160 -29 374 314 51 13 chr3 54607539 54607571 -163429587 - MER5B DNA MER1_type -12 166 137 2201 131 0 13 chr3 54607571 54607884 -163429274 + AluSx SINE Alu 1 309 -3 374 314 51 13 chr3 54607884 54608007 -163429151 - MER5B DNA MER1_type -41 137 5 204 255 85 64 chr3 54608285 54608379 -163428779 - MIR3 SINE MIR -3 205 110 197 0 71 0 chr3 54609155 54609183 -163427975 + (TTTTTA)n Simple_repeat Simple_repeat 1 30 0 2076 119 7 14 chr3 54609420 54609715 -163427443 + AluSx SINE Alu 1 293 -19 216 0 0 0 chr3 54610132 54610156 -163427002 + (A)n Simple_repeat Simple_repeat 1 24 0 904 129 0 0 chr3 54610157 54610281 -163426877 - FLAM_C SINE Alu -8 125 2 1519 146 4 20 chr3 54610296 54610543 -163426615 - AluJb SINE Alu -69 243 1 340 161 149 0 chr3 54610717 54610804 -163426354 - LTR23 LTR ERV1 -5 432 333 3578 111 22 10 chr3 54610829 54611944 -163425214 - L1PA14 LINE L1 -6 6155 4887 793 118 103 0 chr3 54611944 54612080 -163425078 - LTR56 LTR ERV1 -106 339 190 1489 161 44 32 chr3 54612241 54612557 -163424601 + THE1C LTR MaLR 54 373 -2 1087 215 30 4 chr3 54612559 54612792 -163424366 - Tigger3(Golem) DNA MER2_type -2788 241 3 1115 245 195 7 chr3 54612816 54613237 -163423921 - L1MC4 LINE L1 -305 7737 7238 1577 236 145 17 chr3 54613247 54613786 -163423372 - L1MC4 LINE L1 -963 7079 6472 471 279 16 0 chr3 54614215 54614344 -163422814 + MIR SINE MIR 67 197 -65 1681 168 4 0 chr3 54615105 54615367 -163421791 + AluJb SINE Alu 50 312 0 207 0 0 0 chr3 54615608 54615631 -163421527 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 659 206 0 0 chr3 54615736 54615843 -163421315 - FLAM_A SINE Alu -30 112 6 189 74 0 0 chr3 54615861 54615888 -163421270 + (TATATG)n Simple_repeat Simple_repeat 2 28 0 300 293 21 50 chr3 54617425 54617565 -163419593 - MER5B DNA MER1_type 0 178 43 311 293 33 47 chr3 54617600 54617750 -163419408 - MIR SINE MIR -7 255 108 2190 64 11 0 chr3 54617965 54618304 -163418854 - AluY SINE Alu 0 342 1 878 132 40 17 chr3 54618554 54618728 -163418430 - MER96B DNA MER1_type? -239 178 1 715 274 29 14 chr3 54618749 54619026 -163418132 + Charlie2 DNA MER1_type 46 326 -2536 1032 240 126 42 chr3 54619044 54619178 -163417980 + Charlie2 DNA MER1_type 1885 2006 -856 1237 69 0 0 chr3 54619178 54619337 -163417821 - L1PA8 LINE L1 -5 6167 6009 1032 240 126 42 chr3 54619337 54619631 -163417527 + Charlie2 DNA MER1_type 2006 2349 -513 443 200 136 50 chr3 54619988 54620128 -163417030 + MIR3 SINE MIR 43 194 -14 547 340 60 31 chr3 54620275 54620657 -163416501 + L2 LINE L2 2259 2651 -663 265 308 153 7 chr3 54620966 54621122 -163416036 - MIR SINE MIR -63 145 16 231 264 8 112 chr3 54622219 54622344 -163414814 - MIR SINE MIR -111 151 40 252 298 57 76 chr3 54622658 54622816 -163414342 - MIR SINE MIR 0 262 108 491 296 165 48 chr3 54622996 54623438 -163413720 + L2 LINE L2 2818 3311 -2 396 272 109 45 chr3 54623606 54623808 -163413350 - MLT1J LTR MaLR -197 314 100 299 243 129 0 chr3 54623897 54623967 -163413191 + MIR3 SINE MIR 109 187 -21 1400 254 64 12 chr3 54624581 54624987 -163412171 - LTR16A LTR ERVL -5 445 19 458 139 0 0 chr3 54625291 54625363 -163411795 - U5 snRNA snRNA -44 72 1 * 583 218 57 65 chr3 54625360 54625589 -163411569 - MER115 DNA AcHobo -62 631 405 423 265 113 5 chr3 54625608 54625793 -163411365 - MER115 DNA AcHobo -425 268 64 346 200 144 0 chr3 54625801 54625926 -163411232 - LTR16A LTR ERVL -7 443 301 21 36 0 0 chr3 54626694 54626722 -163410436 + GC_rich Low_complexity Low_complexity 1 28 0 393 229 65 15 chr3 54626999 54627118 -163410040 - MIR SINE MIR -73 135 17 419 219 91 64 chr3 54627446 54627633 -163409525 + MIR SINE MIR 2 193 -69 1425 113 26 22 chr3 54628457 54628686 -163408472 - MER30 DNA MER1_type 0 230 1 211 254 84 56 chr3 54628846 54628917 -163408241 - MIR SINE MIR -29 233 161 2724 206 34 35 chr3 54631554 54632067 -163405091 - L1ME2 LINE L1 -39 6125 5612 1682 187 129 45 chr3 54632067 54632485 -163404673 + MSTB2 LTR MaLR 3 455 -2 2724 206 34 35 chr3 54632485 54632685 -163404473 - L1ME2 LINE L1 -552 5612 5413 243 301 164 14 chr3 54633108 54633254 -163403904 - MIR SINE MIR -47 215 48 2290 101 20 0 chr3 54633324 54633620 -163403538 + AluSp SINE Alu 1 302 -11 202 184 20 20 chr3 54634218 54634267 -163402891 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 2361 100 3 0 chr3 54635920 54636219 -163400939 - AluSq SINE Alu -12 301 2 961 261 57 13 chr3 54636623 54636922 -163400236 + MLT1I LTR MaLR 98 409 0 5382 224 90 60 chr3 54637158 54639348 -163397810 + HAL1 LINE L1 84 2339 -168 782 176 0 0 chr3 54639489 54639608 -163397550 + AluJb SINE Alu 164 282 -30 207 0 0 0 chr3 54639612 54639635 -163397523 + (TAA)n Simple_repeat Simple_repeat 2 24 0 218 295 74 0 chr3 54639763 54639858 -163397300 - L2 LINE L2 -189 3083 2982 21 0 0 0 chr3 54640297 54640318 -163396840 + AT_rich Low_complexity Low_complexity 1 21 0 2221 127 3 0 chr3 54640488 54640796 -163396362 - AluSx SINE Alu -2 310 2 230 211 77 20 chr3 54641101 54641175 -163395983 - L1MC/D LINE L1 -297 5824 5824 2385 105 3 0 chr3 54641175 54641480 -163395678 - AluSx SINE Alu -6 306 1 230 211 77 20 chr3 54641480 54641542 -163395616 - L1MC/D LINE L1 -296 5825 5768 415 284 35 35 chr3 54641694 54641895 -163395263 - L1MC/D LINE L1 -2265 5543 5343 2224 103 24 0 chr3 54642589 54642880 -163394278 + AluSx SINE Alu 1 298 -14 211 176 39 20 chr3 54643083 54643134 -163394024 + C-rich Low_complexity Low_complexity 6 57 0 255 263 66 88 chr3 54643141 54643262 -163393896 + L2 LINE L2 3179 3298 -15 1826 94 0 106 chr3 54643262 54643591 -163393567 + AluSx SINE Alu 1 294 -18 255 263 66 88 chr3 54643591 54643606 -163393552 + L2 LINE L2 3298 3312 -1 295 340 19 0 chr3 54643661 54643764 -163393394 - MIR SINE MIR -61 147 43 255 331 85 23 chr3 54645308 54645438 -163391720 + L3b LINE CR1 1434 1571 -12 852 173 18 102 chr3 54645668 54645728 -163391430 - MER3 DNA MER1_type -2 207 144 1962 112 0 27 chr3 54645728 54646023 -163391135 + AluSx SINE Alu 1 287 -25 852 173 18 102 chr3 54646023 54646188 -163390970 - MER3 DNA MER1_type -65 144 1 1046 228 76 91 chr3 54646762 54647170 -163389988 - MLT1H LTR MaLR 0 549 148 248 288 91 45 chr3 54647203 54647335 -163389823 + MIR SINE MIR 65 202 -60 210 263 50 25 chr3 54647418 54647498 -163389660 - L2 LINE L2 -510 2804 2723 790 277 168 36 chr3 54648084 54648524 -163388634 - MLT1H1 LTR MaLR 0 555 58 1398 152 63 19 chr3 54649324 54649616 -163387542 - AluSx SINE Alu 0 307 4 1983 121 34 0 chr3 54649858 54650156 -163387002 - AluSx SINE Alu -4 308 1 281 211 167 0 chr3 54650163 54650253 -163386905 - MIR SINE MIR -121 141 37 214 225 0 0 chr3 54650309 54650349 -163386809 - L2 LINE L2 -22 3291 3252 335 262 49 85 chr3 54650601 54650745 -163386413 + MIR SINE MIR 32 169 -60 773 220 23 12 chr3 54651351 54651524 -163385634 + MER5B DNA MER1_type 1 175 -3 827 255 106 88 chr3 54651780 54651829 -163385329 - MLT1J LTR MaLR -2 509 462 767 195 0 8 chr3 54651829 54651957 -163385201 + FLAM_A SINE Alu 1 127 -6 827 255 106 88 chr3 54651957 54652217 -163384941 - MLT1J LTR MaLR -49 462 185 2294 86 3 0 chr3 54652217 54652519 -163384639 - AluSp SINE Alu -10 303 1 827 255 106 88 chr3 54652519 54652706 -163384452 - MLT1J LTR MaLR -326 185 3 2152 111 0 0 chr3 54653197 54653494 -163383664 + AluSx SINE Alu 1 297 -15 4896 194 51 12 chr3 54653508 54653634 -163383524 + Tigger6a DNA MER2_type 1 121 -1476 180 0 0 0 chr3 54653634 54653654 -163383504 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2076 118 0 0 chr3 54653657 54653945 -163383213 - AluSx SINE Alu -24 288 1 4896 194 51 12 chr3 54653945 54654855 -163382303 + Tigger6a DNA MER2_type 122 1081 -2 270 282 13 0 chr3 54654857 54654935 -163382223 - LTR33 LTR ERVL -76 445 367 365 284 58 19 chr3 54655011 54655219 -163381939 - LTR33 LTR ERVL -267 254 39 2054 119 20 0 chr3 54655252 54655554 -163381604 - AluSx SINE Alu -4 308 1 276 77 0 0 chr3 54656206 54656245 -163380913 + (TG)n Simple_repeat Simple_repeat 2 40 0 1211 149 29 5 chr3 54656548 54656756 -163380402 - MER20 DNA MER1_type 0 219 7 425 222 0 20 chr3 54657026 54657125 -163380033 + LTR16B LTR ERVL 360 456 -8 1322 256 77 40 chr3 54657172 54657602 -163379556 + LTR16B LTR ERVL 6 451 -13 21 36 0 0 chr3 54657642 54657670 -163379488 + AT_rich Low_complexity Low_complexity 1 28 0 1968 231 80 19 chr3 54658174 54658714 -163378444 + MER90 LTR ERV1 3 575 0 187 317 208 20 chr3 54658875 54658976 -163378182 + MIR SINE MIR 56 175 -87 2500 134 28 24 chr3 54659223 54659647 -163377511 + MSTB LTR MaLR 1 426 0 216 150 50 0 chr3 54660916 54660956 -163376202 + CT-rich Low_complexity Low_complexity 1 42 0 2187 98 3 3 chr3 54661162 54661469 -163375689 + AluSc SINE Alu 1 307 -2 5716 57 10 0 chr3 54662614 54663298 -163373860 - LTR8 LTR ERV1 0 691 1 304 215 0 15 chr3 54663472 54663537 -163373621 + L2 LINE L2 3209 3272 0 366 211 0 96 chr3 54664091 54664195 -163372963 + MIR3 SINE MIR 114 207 -1 3331 125 38 27 chr3 54664289 54664848 -163372310 - MER34B LTR ERV1 0 565 1 552 181 0 166 chr3 54665060 54665123 -163372035 - L1ME1 LINE L1 -4 6162 6090 1877 142 0 7 chr3 54665123 54665426 -163371732 - AluJb SINE Alu -11 301 1 552 181 0 166 chr3 54665426 54665561 -163371597 - L1ME1 LINE L1 -76 6090 5997 254 203 85 0 chr3 54665620 54665679 -163371479 - L2 LINE L2 -61 3252 3189 1790 150 24 0 chr3 54666119 54666413 -163370745 + AluJb SINE Alu 3 303 -9 201 316 76 38 chr3 54666988 54667067 -163370091 - L2 LINE L2 -5 3267 3186 1122 175 65 14 chr3 54669465 54669682 -163367476 - MLT1D LTR MaLR 0 505 278 813 168 135 5 chr3 54669709 54669894 -163367264 - MLT1D LTR MaLR -296 209 1 505 246 7 22 chr3 54669993 54670131 -163367027 + Charlie8 DNA MER1_type 145 280 -2137 2074 127 3 13 chr3 54670275 54670590 -163366568 - AluJb SINE Alu 0 312 1 189 0 0 0 chr3 54672016 54672037 -163365121 + (TTCTG)n Simple_repeat Simple_repeat 2 22 0 744 267 260 7 chr3 54672279 54672560 -163364598 - MLT1G1 LTR MaLR -13 582 231 763 153 23 8 chr3 54672642 54672773 -163364385 - FLAM_A SINE Alu 0 133 1 379 254 8 59 chr3 54672776 54672894 -163364264 - MLT1G1 LTR MaLR -460 130 19 1849 146 19 22 chr3 54673115 54673437 -163363721 - MSTB1 LTR MaLR 0 432 112 288 297 144 20 chr3 54674269 54674471 -163362687 - MIR SINE MIR -30 232 6 194 261 43 0 chr3 54674644 54674690 -163362468 + L3 LINE CR1 1526 1573 -4 185 344 0 0 chr3 54674686 54674747 -163362411 + L2 LINE L2 2424 2484 -830 * 1878 121 31 3 chr3 54675204 54675493 -163361665 - AluSx SINE Alu -15 297 1 2439 118 6 8 chr3 54675567 54675923 -163361235 - THE1A LTR MaLR 0 355 1 12370 79 2 4 chr3 54675923 54677505 -163359653 - THE1A-int LTR MaLR 0 1580 1 2478 104 8 8 chr3 54677505 54677860 -163359298 - THE1A LTR MaLR 0 355 1 828 192 47 17 chr3 54678131 54678303 -163358855 + MER45A DNA AcHobo 1 177 -1 259 268 107 37 chr3 54678303 54678422 -163358736 - MIR SINE MIR -69 139 13 309 158 0 92 chr3 54678621 54678697 -163358461 - MER3 DNA MER1_type -6 203 135 773 179 0 15 chr3 54678935 54679069 -163358089 - MER3 DNA MER1_type -76 133 2 237 307 0 0 chr3 54679106 54679181 -163357977 - MIR SINE MIR -12 250 176 * 2985 255 71 49 chr3 54679165 54680511 -163356647 + L2 LINE L2 1912 3278 -35 361 241 212 55 chr3 54680512 54680748 -163356410 - MLT1J LTR MaLR -15 496 224 1593 157 14 20 chr3 54680794 54681088 -163356070 + AluJb SINE Alu 3 294 -18 1869 123 10 30 chr3 54681600 54681901 -163355257 + AluSx SINE Alu 1 295 -17 331 191 191 17 chr3 54682385 54682500 -163354658 - MER5A DNA MER1_type -6 183 49 371 227 214 63 chr3 54682924 54683162 -163353996 + MLT1J LTR MaLR 223 496 -15 657 222 26 37 chr3 54683163 54683352 -163353806 - L2 LINE L2 -35 3278 3092 1633 144 40 13 chr3 54683478 54683776 -163353382 + AluJb SINE Alu 1 306 -6 353 242 24 48 chr3 54683837 54683961 -163353197 - L1MC5 LINE L1 -51 7910 7790 251 182 0 0 chr3 54683961 54684016 -163353142 + L1ME3A LINE L1 5897 5951 -219 1172 307 113 13 chr3 54684347 54684878 -163352280 + L2 LINE L2 1848 2431 -883 255 31 0 0 chr3 54685023 54685055 -163352103 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 267 214 291 34 chr3 54685335 54685452 -163351706 - L2 LINE L2 -2 3311 3165 1184 158 0 0 chr3 54685609 54685799 -163351359 - L1PB1 LINE L1 -8 6143 5954 700 188 119 23 chr3 54686547 54686765 -163350393 + LTR37B LTR ERV1 230 468 0 1462 176 184 9 chr3 54687317 54687653 -163349505 + LTR48 LTR ERV1 1 395 -392 254 283 17 0 chr3 54687654 54687714 -163349444 - MER2 DNA MER2_type 0 345 285 466 138 0 0 chr3 54687740 54687805 -163349353 + MER2 DNA MER2_type 281 345 0 602 186 0 0 chr3 54687805 54687902 -163349256 - MER2 DNA MER2_type -247 98 2 1806 171 50 34 chr3 54687903 54688284 -163348874 + LTR48 LTR ERV1 397 783 -4 423 277 35 43 chr3 54688376 54688517 -163348641 + MIR SINE MIR 75 214 -48 4098 120 31 2 chr3 54688972 54689589 -163347569 + MER41B LTR ERV1 1 635 0 227 216 57 23 chr3 54689841 54689929 -163347229 + L1MC4a LINE L1 6088 6178 -1630 1012 100 0 0 chr3 54689958 54690088 -163347070 + AluSg1 SINE Alu 2 131 -178 1096 190 27 43 chr3 54690277 54690577 -163346581 + AluSg SINE Alu 4 298 -2 1768 184 0 3 chr3 54690590 54690900 -163346258 + AluJb SINE Alu 1 309 -3 2158 99 3 0 chr3 54691058 54691360 -163345798 + AluSp SINE Alu 7 309 -4 2642 111 72 10 chr3 54691390 54691795 -163345363 - MER4C LTR ERV1 0 465 36 2149 109 23 57 chr3 54691795 54691914 -163345244 - MER41B LTR ERV1 0 635 513 2128 94 27 0 chr3 54691914 54692212 -163344946 + AluSx SINE Alu 1 306 -6 2149 109 23 57 chr3 54692212 54692441 -163344717 - MER41B LTR ERV1 -122 513 299 3772 118 7 18 chr3 54692441 54692580 -163344578 - MER41A LTR ERV1 0 554 415 2014 109 0 0 chr3 54692580 54692855 -163344303 + AluSx SINE Alu 1 275 -37 3772 118 7 18 chr3 54692855 54693275 -163343883 - MER41A LTR ERV1 -139 415 1 345 104 0 0 chr3 54693275 54693314 -163343844 - MER4C LTR ERV1 -426 39 1 360 34 34 17 chr3 54694368 54694427 -163342731 + (TTTC)n Simple_repeat Simple_repeat 3 62 0 2364 72 23 0 chr3 54694606 54694911 -163342247 - AluSx SINE Alu 0 312 1 419 286 77 16 chr3 54695423 54695605 -163341553 + LTR37B LTR ERV1 6 198 -270 587 253 62 0 chr3 54695621 54695783 -163341375 + MLT2B1 LTR ERVL 1 172 -348 1958 124 37 48 chr3 54695992 54696370 -163340788 + THE1C LTR MaLR 1 374 -1 5834 122 44 16 chr3 54696371 54697063 -163340095 + Tigger3b DNA MER2_type 243 971 -2057 2111 130 11 40 chr3 54697063 54697410 -163339748 + MER1B DNA MER1_type 1 337 0 5834 122 44 16 chr3 54697410 54697677 -163339481 + Tigger3b DNA MER2_type 971 1229 -2 393 269 69 15 chr3 54697678 54697808 -163339350 + L1MC4 LINE L1 7757 7893 -149 264 167 37 0 chr3 54697818 54697872 -163339286 + L1MC4 LINE L1 7986 8041 -1 1055 150 48 89 chr3 54699206 54699225 -163337933 + L1MB3 LINE L1 5908 5926 -257 1356 110 97 0 chr3 54699225 54699453 -163337705 + L1PA13 LINE L1 5913 6162 -1 1055 150 48 89 chr3 54699453 54699687 -163337471 + L1MB3 LINE L1 5926 6139 -44 2153 70 18 0 chr3 54699687 54699971 -163337187 - AluY SINE Alu -22 289 1 1055 150 48 89 chr3 54699971 54700012 -163337146 + L1MB3 LINE L1 6139 6180 -3 1430 173 3 51 chr3 54700235 54700548 -163336610 + AluJo SINE Alu 1 298 -14 505 325 123 35 chr3 54700571 54701180 -163335978 - L3 LINE CR1 -14 1563 901 913 205 0 0 chr3 54701856 54702022 -163335136 + FRAM SINE Alu 1 166 0 243 244 179 48 chr3 54702168 54702336 -163334822 + MIR SINE MIR 3 192 -70 1959 290 85 45 chr3 54703034 54704275 -163332883 - HERV16 LTR ERVL -1621 4033 2748 801 336 69 19 chr3 54704370 54704745 -163332413 - HERV16 LTR ERVL -3143 2621 2228 437 319 61 31 chr3 54704809 54705252 -163331906 - HERV16 LTR ERVL -2927 2069 1588 487 212 31 124 chr3 54705368 54705507 -163331651 - L1ME LINE L1 -391 5730 5618 2145 78 21 0 chr3 54705507 54705788 -163331370 - AluSc SINE Alu -22 287 1 487 212 31 124 chr3 54705788 54705874 -163331284 - L1ME LINE L1 -503 5618 5526 1936 126 3 0 chr3 54705926 54706220 -163330938 + AluSc SINE Alu 1 295 -14 1545 154 75 0 chr3 54706237 54706516 -163330642 + AluJo SINE Alu 7 306 -6 217 0 61 0 chr3 54709179 54709212 -163327946 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1756 161 3 7 chr3 54709222 54709514 -163327644 + AluJo SINE Alu 1 291 -21 21 0 0 0 chr3 54709524 54709545 -163327613 + AT_rich Low_complexity Low_complexity 1 21 0 2019 107 10 7 chr3 54709925 54710215 -163326943 + AluSg SINE Alu 1 291 -19 1107 234 32 8 chr3 54710651 54710899 -163326259 + MIR SINE MIR 6 259 -3 406 278 6 77 chr3 54711074 54711243 -163325915 - MIR SINE MIR 0 262 106 231 171 129 0 chr3 54711553 54711623 -163325535 - L2 LINE L2 -61 3211 3133 1331 160 27 77 chr3 54712756 54713056 -163324102 + AluJo SINE Alu 5 289 -13 2627 32 6 0 chr3 54713056 54713368 -163323790 + AluYb8 SINE Alu 1 314 -4 2318 87 7 3 chr3 54713392 54713701 -163323457 + AluSx SINE Alu 1 310 -2 1842 226 103 71 chr3 54714644 54715216 -163321942 + L1ME3A LINE L1 4866 5418 -752 2207 99 0 0 chr3 54715216 54715508 -163321650 + AluSx SINE Alu 2 293 -19 1842 226 103 71 chr3 54715508 54716080 -163321078 + L1ME3A LINE L1 5418 6069 -101 351 228 7 121 chr3 54717311 54717460 -163319698 - L1ME LINE L1 -356 5765 5634 469 236 38 9 chr3 54717753 54717859 -163319299 - L2 LINE L2 -7 3306 3198 1955 116 35 0 chr3 54718339 54718623 -163318535 - AluSx SINE Alu -18 294 1 383 303 23 23 chr3 54719239 54719371 -163317787 + L2 LINE L2 3136 3267 -5 2053 119 3 0 chr3 54719919 54720214 -163316944 - AluSx SINE Alu -16 296 1 2150 125 0 0 chr3 54721285 54721597 -163315561 + AluSx SINE Alu 1 312 0 493 304 31 6 chr3 54721845 54722006 -163315152 + MIR SINE MIR 47 211 -51 27 0 0 0 chr3 54722198 54722225 -163314933 + AT_rich Low_complexity Low_complexity 1 27 0 220 302 129 0 chr3 54723653 54723769 -163313389 - L2 LINE L2 -251 3021 2891 2121 109 7 0 chr3 54724336 54724640 -163312518 + AluSp SINE Alu 1 306 -7 450 0 0 0 chr3 54724712 54724762 -163312396 + (CA)n Simple_repeat Simple_repeat 2 51 0 200 147 29 0 chr3 54725066 54725100 -163312058 - MIR3 SINE MIR -17 191 157 197 206 48 63 chr3 54725094 54725157 -163312001 + L2 LINE L2 2755 2816 -498 * 882 257 49 13 chr3 54725366 54725595 -163311563 - MIR SINE MIR -14 248 15 219 69 0 0 chr3 54727325 54727354 -163309804 + (CCA)n Simple_repeat Simple_repeat 1 29 0 195 250 62 0 chr3 54728532 54728596 -163308562 + MIR SINE MIR 67 134 -128 1244 233 84 0 chr3 54728686 54728961 -163308197 + MER68 LTR ERV1 1 298 -264 448 184 160 4 chr3 54728984 54729085 -163308073 + MER68 LTR ERV1 461 562 0 582 304 85 14 chr3 54729272 54729517 -163307641 - MIR SINE MIR -6 256 3 246 220 0 0 chr3 54729823 54729873 -163307285 + L2 LINE L2 3223 3272 0 499 307 7 7 chr3 54730638 54730775 -163306383 - MIR SINE MIR -115 147 11 936 204 34 0 chr3 54731008 54731184 -163305974 + MER58A DNA MER1_type 42 223 -1 3315 174 56 68 chr3 54731222 54732046 -163305112 - L1MC4a LINE L1 -781 7027 6214 820 139 66 0 chr3 54732052 54732203 -163304955 - AluSg/x SINE Alu -22 290 130 1056 226 79 36 chr3 54732203 54732596 -163304562 - L1MC4a LINE L1 -1584 6224 5815 3562 129 142 59 chr3 54732959 54733849 -163303309 + pTR5 LTR ERV1 741 1999 -439 425 199 51 62 chr3 54733849 54733986 -163303172 + LTR30 LTR ERV1 375 642 -80 2409 73 3 6 chr3 54733986 54734301 -163302857 + pTR5 LTR ERV1 79 392 -2046 465 259 65 14 chr3 54734627 54734766 -163302392 + MIR3 SINE MIR 52 197 -11 739 268 138 4 chr3 54734797 54735028 -163302130 - MIR SINE MIR 0 262 1 1858 143 30 17 chr3 54735134 54735434 -163301724 - AluJo SINE Alu -8 304 1 257 300 150 25 chr3 54736123 54736283 -163300875 + MIR SINE MIR 54 233 -29 197 156 44 22 chr3 54736323 54736368 -163300790 - MIR SINE MIR -60 202 157 209 344 0 16 chr3 54736859 54736920 -163300238 + MIR3 SINE MIR 14 73 -135 1351 167 123 0 chr3 54737711 54737987 -163299171 - AluJo SINE Alu -2 310 1 239 292 178 27 chr3 54738163 54738348 -163298810 - MIR SINE MIR -21 241 29 320 261 113 17 chr3 54738478 54738593 -163298565 + MER5A DNA MER1_type 64 189 0 507 269 94 6 chr3 54739062 54739222 -163297936 + MIR SINE MIR 23 196 -66 264 195 122 24 chr3 54739363 54739445 -163297713 + LTR33 LTR ERVL 60 149 -372 637 281 78 9 chr3 54739490 54739721 -163297437 + LTR33 LTR ERVL 227 473 -48 186 237 172 65 chr3 54740687 54740780 -163296378 - L2 LINE L2 -2 3270 3168 290 316 13 0 chr3 54740951 54741027 -163296131 + L2 LINE L2 2985 3061 -211 24 0 0 0 chr3 54741297 54741321 -163295837 + AT_rich Low_complexity Low_complexity 1 24 0 859 137 0 0 chr3 54741321 54741445 -163295713 - FLAM_C SINE Alu -19 124 1 229 329 12 24 chr3 54741561 54741646 -163295512 - L2 LINE L2 -1 3271 3188 812 30 60 0 chr3 54742623 54742723 -163294435 - AluSc SINE Alu -185 124 19 297 0 0 0 chr3 54743730 54743763 -163293395 + (TG)n Simple_repeat Simple_repeat 1 33 0 234 0 0 0 chr3 54743762 54743788 -163293370 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 1029 216 15 83 chr3 54745718 54745778 -163291380 - MIR SINE MIR -13 249 186 2335 91 7 0 chr3 54745778 54746074 -163291084 + AluSp SINE Alu 1 298 -15 1029 216 15 83 chr3 54746074 54746277 -163290881 - MIR SINE MIR -76 186 4 2100 132 0 0 chr3 54747068 54747357 -163289801 - AluSx SINE Alu -23 289 1 517 198 69 0 chr3 54747535 54747651 -163289507 + FLAM_A SINE Alu 19 142 0 252 227 61 30 chr3 54748548 54748614 -163288544 + MIR SINE MIR 65 132 -76 675 275 16 16 chr3 54748990 54749179 -163287979 - MIR3 SINE MIR -8 200 12 285 305 114 71 chr3 54750110 54750320 -163286838 + MIR SINE MIR 5 223 -39 1058 320 76 24 chr3 54752908 54753626 -163283532 - L2 LINE L2 -17 3296 2528 521 227 53 23 chr3 54753631 54753763 -163283395 - MER5B DNA MER1_type -3 175 40 211 326 45 8 chr3 54753942 54754074 -163283084 - L2 LINE L2 -989 2325 2189 276 30 0 0 chr3 54754793 54754826 -163282332 + (TA)n Simple_repeat Simple_repeat 2 34 0 1752 140 121 13 chr3 54755693 54756007 -163281151 - MER7A DNA MER2_type 0 346 1 890 233 42 34 chr3 54757035 54757271 -163279887 + MIR SINE MIR 25 262 0 555 305 135 45 chr3 54757762 54758319 -163278839 - L2 LINE L2 -557 2757 2151 445 360 57 42 chr3 54758575 54758958 -163278200 + L2 LINE L2 2872 3260 -12 2240 102 3 19 chr3 54759505 54759820 -163277338 + AluSg SINE Alu 1 310 0 199 289 190 27 chr3 54760390 54760546 -163276612 + MIR SINE MIR 21 192 -57 1844 144 0 52 chr3 54760776 54760913 -163276245 + AluJo SINE Alu 1 144 -168 2432 69 14 0 chr3 54760913 54761204 -163275954 + AluSp SINE Alu 1 295 -18 1844 144 0 52 chr3 54761204 54761372 -163275786 + AluJo SINE Alu 144 290 -22 603 159 159 0 chr3 54761372 54761485 -163275673 - FRAM SINE Alu -13 163 33 2213 124 20 0 chr3 54761626 54761925 -163275233 - AluSq SINE Alu -6 307 3 274 158 105 0 chr3 54764169 54764226 -163272932 - L2 LINE L2 -21 3251 3189 1816 184 0 3 chr3 54769237 54769530 -163267628 - AluJo SINE Alu -20 292 1 2475 53 0 3 chr3 54769689 54769972 -163267186 + AluY SINE Alu 16 297 -14 877 121 55 71 chr3 54770198 54770380 -163266778 + MER5A DNA MER1_type 7 185 -4 489 289 93 61 chr3 54771205 54771451 -163265707 + MIR SINE MIR 5 258 -4 256 303 82 0 chr3 54771529 54771651 -163265507 - MER112 DNA MER1_type -121 139 8 259 273 20 61 chr3 54772426 54772525 -163264633 + MIR SINE MIR 42 136 -72 306 281 53 0 chr3 54772904 54773018 -163264140 - L1ME4a LINE L1 0 6121 6002 430 195 201 52 chr3 54773025 54773199 -163263959 - L1ME4a LINE L1 -265 5856 5657 1270 184 40 126 chr3 54773200 54773926 -163263232 - L1MC4a LINE L1 -3 7805 7192 1735 170 11 4 chr3 54775821 54776097 -163261061 - AluJo SINE Alu -32 280 3 364 289 70 8 chr3 54776213 54776341 -163260817 - MIR3 SINE MIR -32 176 41 537 324 89 13 chr3 54776394 54776619 -163260539 + MIR SINE MIR 14 255 -7 225 277 21 106 chr3 54776690 54776784 -163260374 + MIR3 SINE MIR 116 201 -7 795 183 0 0 chr3 54776991 54777111 -163260047 - FLAM_C SINE Alu -21 122 3 198 295 33 0 chr3 54779552 54779613 -163257545 + MIR SINE MIR 98 160 -102 182 258 0 45 chr3 54780582 54780648 -163256510 + L2 LINE L2 3210 3272 0 274 200 36 0 chr3 54781483 54781538 -163255620 - L2 LINE L2 0 3272 3216 441 0 0 0 chr3 54781980 54782029 -163255129 + (TTCC)n Simple_repeat Simple_repeat 2 50 0 605 205 113 7 chr3 54782550 54782701 -163254457 - MER58B DNA MER1_type 0 341 175 21 0 0 0 chr3 54783113 54783134 -163254024 + AT_rich Low_complexity Low_complexity 1 21 0 207 347 32 63 chr3 54833272 54833462 -163203696 - L2 LINE L2 -218 3054 2871 862 240 116 4 chr3 54833560 54833793 -163203365 + MIR SINE MIR 2 260 -2 470 236 169 0 chr3 54833926 54834074 -163203084 + MER96 DNA MER1_type 3 175 0 1091 119 6 0 chr3 54834328 54834504 -163202654 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 665 291 48 9 chr3 54834965 54835192 -163201966 - MIR SINE MIR 0 262 27 2135 123 3 0 chr3 54836934 54837244 -163199914 - AluSq SINE Alu -2 311 1 468 231 166 31 chr3 54838070 54838258 -163198900 + L1ME3 LINE L1 5871 6097 -65 193 56 28 28 chr3 54838258 54838294 -163198864 + (CA)n Simple_repeat Simple_repeat 2 37 0 468 231 166 31 chr3 54838294 54838334 -163198824 + L1ME3 LINE L1 6097 6130 -32 1781 160 10 0 chr3 54838352 54838646 -163198512 - AluJb SINE Alu -15 297 1 1476 181 38 20 chr3 54839096 54839389 -163197769 - AluJb SINE Alu -14 298 1 21 0 0 0 chr3 54839402 54839423 -163197735 + AT_rich Low_complexity Low_complexity 1 21 0 1616 151 63 0 chr3 54839508 54839807 -163197351 - L1MB3 LINE L1 -2 6181 5864 2181 99 6 10 chr3 54840179 54840492 -163196666 + AluSx SINE Alu 1 312 0 241 347 118 14 chr3 54840860 54841004 -163196154 + MIR SINE MIR 97 255 -7 2364 212 57 26 chr3 54841061 54841656 -163195502 + MLT1E3 LTR MaLR 2 624 0 2724 16 0 0 chr3 54841664 54841970 -163195188 + AluY SINE Alu 1 306 -5 2126 64 67 0 chr3 54842369 54842651 -163194507 - AluY SINE Alu -10 301 1 706 243 182 0 chr3 54845030 54845244 -163191914 + L1ME1 LINE L1 5909 6161 -5 324 332 20 5 chr3 54845347 54845549 -163191609 - L1MC4a LINE L1 -402 5760 5717 1833 109 51 44 chr3 54845752 54846046 -163191112 + AluSx SINE Alu 1 296 -16 346 322 29 23 chr3 54846467 54846641 -163190517 + L1MC/D LINE L1 5607 5781 -2027 2069 101 130 87 chr3 54846718 54846788 -163190370 - MSTB1 LTR MaLR 0 432 366 2250 104 13 22 chr3 54846788 54847104 -163190054 + AluSq SINE Alu 1 313 0 2069 101 130 87 chr3 54847104 54847447 -163189711 - MSTB1 LTR MaLR -66 366 1 359 247 24 24 chr3 54847554 54847639 -163189519 - MIR SINE MIR -152 110 26 181 261 159 34 chr3 54848179 54848267 -163188891 - L3 LINE CR1 -338 1239 1141 274 216 72 52 chr3 54848759 54848856 -163188302 + MIR SINE MIR 22 120 -142 2260 125 0 0 chr3 54849146 54849442 -163187716 + AluSx SINE Alu 1 296 -16 2007 148 0 3 chr3 54850062 54850360 -163186798 - AluSx SINE Alu -15 297 1 275 345 29 0 chr3 54850771 54850910 -163186248 + L1ME LINE L1 5501 5643 -478 2360 81 0 14 chr3 54851152 54851447 -163185711 + AluSq SINE Alu 5 295 -18 315 160 200 0 chr3 54851660 54851735 -163185423 + L1ME LINE L1 5711 5800 -321 942 101 0 0 chr3 54853090 54853209 -163183949 + AluJb SINE Alu 1 119 -193 35 0 0 0 chr3 54853209 54853244 -163183914 + AT_rich Low_complexity Low_complexity 1 35 0 202 216 0 20 chr3 54854684 54854735 -163182423 + CT-rich Low_complexity Low_complexity 1 50 0 210 195 0 0 chr3 54855769 54855810 -163181348 - L2 LINE L2 -95 3177 3137 292 232 0 85 chr3 54855862 54855944 -163181214 - MIR3 SINE MIR -24 184 110 2211 138 0 0 chr3 54856664 54856969 -163180189 + AluSx SINE Alu 1 305 -7 1055 264 35 35 chr3 54856997 54857391 -163179767 + HAL1 LINE L1 35 428 -2079 544 247 13 0 chr3 54857384 54857538 -163179620 - HAL1 LINE L1 -973 1534 1379 * 2130 256 55 57 chr3 54857602 54857946 -163179212 + HAL1 LINE L1 450 793 -1714 2484 90 0 0 chr3 54857946 54858256 -163178902 - AluSx SINE Alu -2 310 1 2130 256 55 57 chr3 54858256 54858354 -163178804 + HAL1 LINE L1 793 890 -1617 348 24 0 0 chr3 54858354 54858395 -163178763 + (GAAA)n Simple_repeat Simple_repeat 3 43 0 2130 256 55 57 chr3 54858395 54858548 -163178610 + HAL1 LINE L1 890 1042 -1465 2349 110 0 3 chr3 54858548 54858857 -163178301 + AluSp SINE Alu 1 308 -5 2130 256 55 57 chr3 54858857 54859253 -163177905 + HAL1 LINE L1 1042 1441 -1066 855 176 0 0 chr3 54859254 54859385 -163177773 + AluSg/x SINE Alu 135 265 -45 1193 251 3 13 chr3 54859400 54859699 -163177459 + HAL1 LINE L1 1427 1722 -785 2383 101 0 3 chr3 54859803 54860109 -163177049 + AluSx SINE Alu 1 305 -7 457 217 124 12 chr3 54860118 54860279 -163176879 - MER69 DNA AcHobo -60 2466 2288 2585 238 47 24 chr3 54860300 54861061 -163176097 - MER69 DNA AcHobo -1655 871 93 342 164 231 10 chr3 54861416 54861520 -163175638 + MLT1J LTR MaLR 377 503 -8 662 293 71 21 chr3 54861623 54861687 -163175471 + MIR SINE MIR 6 65 -197 2286 121 0 0 chr3 54861687 54861993 -163175165 + AluSx SINE Alu 2 307 -5 662 293 71 21 chr3 54861993 54862167 -163174991 + MIR SINE MIR 65 256 -6 390 286 50 36 chr3 54862278 54862418 -163174740 + L2 LINE L2 3171 3312 -1 867 154 0 15 chr3 54863618 54863754 -163173404 + AluJo SINE Alu 13 146 -166 3301 136 25 35 chr3 54863766 54863988 -163173170 - L1MB3 LINE L1 -2 6181 5958 2455 83 0 0 chr3 54863988 54864288 -163172870 - AluY SINE Alu -11 300 1 3301 136 25 35 chr3 54864288 54864674 -163172484 - L1MB3 LINE L1 -225 5958 5579 556 166 15 106 chr3 54864682 54864814 -163172344 - L1MC5 LINE L1 -262 7699 7587 1815 151 11 3 chr3 54864814 54865148 -163172010 + AluJb SINE Alu 1 336 0 556 166 15 106 chr3 54865148 54865212 -163171946 - L1MC5 LINE L1 -374 7587 7519 2656 187 32 34 chr3 54865218 54865636 -163171522 - L1MD3 LINE L1 -5 7990 7572 2296 124 0 0 chr3 54865636 54865934 -163171224 + AluSx SINE Alu 1 298 -14 2656 187 32 34 chr3 54865934 54866140 -163171018 - L1MD3 LINE L1 -423 7572 7367 21 0 0 0 chr3 54866157 54866178 -163170980 + AT_rich Low_complexity Low_complexity 1 21 0 565 241 39 39 chr3 54866282 54866485 -163170673 - L1MC5 LINE L1 -568 7393 7191 389 219 8 47 chr3 54866571 54866699 -163170459 - HsTC2 DNA Tc2 -2 1896 1774 * 1667 247 53 30 chr3 54866681 54867224 -163169934 - HsTC2 DNA Tc2 -1100 798 243 4814 108 13 1 chr3 54867229 54867908 -163169250 - L1PA15 LINE L1 -16 6149 5463 706 179 148 49 chr3 54868443 54868627 -163168531 - HsTC2 DNA Tc2 -1653 245 34 2152 109 0 7 chr3 54868627 54868921 -163168237 + AluSx SINE Alu 1 292 -20 706 179 148 49 chr3 54868921 54868959 -163168199 - HsTC2 DNA Tc2 -1864 34 1 271 286 133 0 chr3 54869646 54869751 -163167407 - MER103 DNA DNA -46 120 2 250 203 27 54 chr3 54869757 54869831 -163167327 + HsTC2 DNA Tc2 1 72 -1826 2136 102 50 0 chr3 54869853 54870136 -163167022 + AluSx SINE Alu 1 297 -15 753 181 0 0 chr3 54870598 54870731 -163166427 - L1MB7 LINE L1 -9 6175 6043 1150 91 0 0 chr3 54870743 54870897 -163166261 + LTR49 LTR ERV1 1 154 -441 583 216 23 47 chr3 54870982 54871153 -163166005 + LTR49 LTR ERV1 426 592 -3 2094 117 0 46 chr3 54871160 54871196 -163165962 - AluSx SINE Alu -1 311 275 297 0 0 0 chr3 54871196 54871229 -163165929 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 2094 117 0 46 chr3 54871229 54871518 -163165640 - AluSx SINE Alu -37 275 1 457 284 74 6 chr3 54871885 54872052 -163165106 + MIR SINE MIR 33 210 -52 394 294 117 20 chr3 54872186 54872434 -163164724 + L3 LINE CR1 1213 1484 -93 498 231 33 82 chr3 54872857 54873039 -163164119 - MER5B DNA MER1_type -1 177 5 464 255 87 20 chr3 54873371 54873520 -163163638 + MIR SINE MIR 104 262 0 2205 114 3 0 chr3 54873529 54873828 -163163330 - AluSx SINE Alu -12 300 1 2388 122 94 5 chr3 54874097 54874490 -163162668 + MSTA LTR MaLR 1 428 0 239 253 13 25 chr3 54875205 54875284 -163161874 + CT-rich Low_complexity Low_complexity 1 78 0 279 254 27 27 chr3 54875857 54875967 -163161191 - LTR33 LTR ERVL 0 521 412 261 230 121 82 chr3 54876305 54876697 -163160461 + L1ME4a LINE L1 5693 6103 -18 345 332 88 21 chr3 54876752 54876945 -163160213 + L1ME LINE L1 5570 5775 -346 2303 104 13 0 chr3 54877079 54877387 -163159771 - AluSx SINE Alu 0 312 1 238 216 20 0 chr3 54878318 54878369 -163158789 - MLT1G1 LTR MaLR 0 595 544 978 247 30 54 chr3 54878414 54878750 -163158408 - MLT1G3 LTR MaLR -199 331 4 194 248 0 145 chr3 54879130 54879198 -163157960 + L2 LINE L2 2925 2971 -301 2076 147 0 3 chr3 54879198 54879511 -163157647 - AluSx SINE Alu 0 312 1 194 248 0 145 chr3 54879511 54879559 -163157599 + L2 LINE L2 2971 3024 -248 268 271 0 12 chr3 54879818 54879903 -163157255 - Charlie8 DNA MER1_type -2266 151 68 2108 117 7 0 chr3 54880207 54880525 -163156633 + AluSq SINE Alu 1 320 0 663 331 46 36 chr3 54880538 54880955 -163156203 - ERVL LTR ERVL -618 5146 4726 713 292 19 15 chr3 54881167 54881434 -163155724 - ERVL LTR ERVL -1253 4401 4134 1779 322 94 32 chr3 54881809 54882179 -163154979 - ERVL LTR ERVL -1888 3766 3421 2511 186 77 2 chr3 54882179 54882683 -163154475 - MER34 LTR ERV1 0 542 1 1779 322 94 32 chr3 54882683 54883812 -163153346 - ERVL LTR ERVL -2233 3421 2139 197 175 25 0 chr3 54883896 54883936 -163153222 + MIR SINE MIR 160 200 -62 2110 129 0 0 chr3 54883942 54884221 -163152937 + AluSx SINE Alu 1 279 -33 339 303 67 0 chr3 54884296 54884385 -163152773 - L2 LINE L2 -2 3270 3176 584 268 48 43 chr3 54884639 54884848 -163152310 + MIR SINE MIR 21 230 -32 223 241 18 28 chr3 54885189 54885272 -163151886 - MIR SINE MIR -89 119 41 1858 153 29 7 chr3 54885404 54885685 -163151473 + AluJb SINE Alu 1 287 -25 2205 74 19 0 chr3 54885718 54885989 -163151169 + AluY SINE Alu 29 304 -7 181 313 0 30 chr3 54886006 54886073 -163151085 + L2 LINE L2 3173 3237 -35 216 0 0 0 chr3 54886085 54886109 -163151049 + (TAGA)n Simple_repeat Simple_repeat 4 27 0 551 273 66 48 chr3 54886121 54886348 -163150810 - MIR SINE MIR -30 232 2 1625 179 29 0 chr3 54887178 54887451 -163149707 - AluSx SINE Alu -18 294 14 485 226 154 23 chr3 54887458 54887679 -163149479 - LTR16A1 LTR ERVL -48 409 160 324 189 54 0 chr3 54888142 54888216 -163148942 - MIR SINE MIR -132 130 53 2563 193 74 0 chr3 54888233 54888761 -163148397 - MLT1F1 LTR MaLR 0 567 1 574 282 105 43 chr3 54889452 54889620 -163147538 + LTR16B LTR ERVL 141 297 -167 775 159 77 39 chr3 54889620 54889802 -163147356 + MER53 DNA DNA 1 189 0 574 282 105 43 chr3 54889802 54889938 -163147220 + LTR16B LTR ERVL 297 464 0 201 74 0 0 chr3 54889946 54889973 -163147185 + (CGGGG)n Simple_repeat Simple_repeat 1 27 0 371 255 40 54 chr3 54890158 54890307 -163146851 - MER5A DNA MER1_type -5 184 38 2273 98 7 3 chr3 54890467 54890764 -163146394 - AluSx SINE Alu -14 298 1 1806 184 0 0 chr3 54890966 54891276 -163145882 - AluJo SINE Alu 0 312 3 333 0 0 0 chr3 54891649 54891686 -163145472 + (CAGG)n Simple_repeat Simple_repeat 1 37 0 199 295 16 0 chr3 54891859 54891920 -163145238 - L2 LINE L2 -3 3269 3208 2217 119 0 6 chr3 54894261 54894572 -163142586 - AluSg SINE Alu -1 309 1 1736 166 61 37 chr3 54894703 54895112 -163142046 + L1MB5 LINE L1 5746 6164 -10 292 285 29 29 chr3 54896053 54896190 -163140968 - MLT1K LTR MaLR -440 148 12 373 321 116 15 chr3 54896205 54896546 -163140612 - L2 LINE L2 -222 3050 2678 28 29 0 0 chr3 54896667 54896702 -163140456 + AT_rich Low_complexity Low_complexity 1 35 0 196 226 0 0 chr3 54897096 54897127 -163140031 - L2 LINE L2 -2833 481 451 2073 323 28 24 chr3 54897494 54897779 -163139379 - ERVL LTR ERVL -1415 4349 4067 2308 104 0 0 chr3 54897779 54898076 -163139082 - AluSx SINE Alu -11 301 5 2073 323 28 24 chr3 54898076 54898754 -163138404 - ERVL LTR ERVL -1697 4067 3382 1576 217 3 7 chr3 54899099 54899394 -163137764 - AluJo SINE Alu -18 294 1 2536 52 3 0 chr3 54899398 54899688 -163137470 - AluY SINE Alu -20 291 1 226 294 59 39 chr3 54899787 54899889 -163137269 - MIR SINE MIR -65 143 40 918 240 28 13 chr3 54900314 54900543 -163136615 + MIR SINE MIR 2 234 -28 403 276 22 22 chr3 54901721 54901855 -163135303 + MER94 DNA DNA 1 134 0 25 0 0 0 chr3 54902070 54902095 -163135063 + AT_rich Low_complexity Low_complexity 1 25 0 2222 135 0 3 chr3 54902097 54902409 -163134749 + AluSx SINE Alu 1 311 -1 268 247 78 0 chr3 54902478 54902555 -163134603 + MIR SINE MIR 26 108 -154 1825 145 0 56 chr3 54902721 54903024 -163134134 + AluJb SINE Alu 1 286 -26 383 76 25 38 chr3 54903597 54903676 -163133482 + (TTCC)n Simple_repeat Simple_repeat 1 78 0 2087 143 13 0 chr3 54903676 54903977 -163133181 - AluSx SINE Alu -7 305 1 444 266 234 0 chr3 54904259 54904473 -163132685 - MLT1L LTR MaLR 0 615 352 737 189 33 0 chr3 54904550 54904672 -163132486 + FLAM_C SINE Alu 6 131 -12 536 285 32 16 chr3 54904680 54904866 -163132292 - MLT1L LTR MaLR -342 273 85 2155 118 0 0 chr3 54906034 54906323 -163130835 - AluSq SINE Alu -24 289 1 760 251 61 84 chr3 54907001 54907436 -163129722 - MLT1G LTR MaLR -7 548 146 1917 152 0 7 chr3 54907436 54907743 -163129415 + AluJb SINE Alu 5 309 0 760 251 61 84 chr3 54907743 54907885 -163129273 - MLT1G LTR MaLR -409 146 2 207 0 0 0 chr3 54908494 54908517 -163128641 + (TTA)n Simple_repeat Simple_repeat 2 24 0 394 264 132 57 chr3 54908869 54909081 -163128077 + MIR SINE MIR 35 262 0 2228 106 0 0 chr3 54909670 54909984 -163127174 + AluSq SINE Alu 1 314 0 228 261 62 0 chr3 54910212 54910277 -163126881 + L2 LINE L2 3235 3303 -10 581 272 89 17 chr3 54910544 54910814 -163126344 + L1ME3A LINE L1 5078 5327 -843 1954 172 17 17 chr3 54910814 54911162 -163125996 - MER7A DNA MER2_type 0 346 1 581 272 89 17 chr3 54911162 54911411 -163125747 + L1ME3A LINE L1 5327 5695 -475 838 150 0 0 chr3 54911415 54911535 -163125623 + FLAM_C SINE Alu 5 124 -19 1739 199 0 0 chr3 54911549 54911846 -163125312 + AluJb SINE Alu 3 299 -13 1349 233 63 72 chr3 54911846 54912335 -163124823 + L1ME3A LINE L1 5686 6170 0 365 263 20 0 chr3 54912542 54912641 -163124517 + MLT1K LTR MaLR 486 586 -2 1929 150 7 0 chr3 54912732 54913044 -163124114 - AluJb SINE Alu 0 314 1 554 148 23 0 chr3 54913664 54913752 -163123406 - LTR47A LTR ERVL 0 452 363 311 315 0 22 chr3 54913762 54913842 -163123316 - L1MC4 LINE L1 -1339 6703 6623 2421 57 0 0 chr3 54913842 54914156 -163123002 - AluY SINE Alu 0 314 1 1922 116 10 44 chr3 54914167 54914461 -163122697 - AluSx SINE Alu -28 284 1 1781 152 97 3 chr3 54914461 54914803 -163122355 - LTR47A LTR ERVL -78 374 1 2235 113 7 0 chr3 54915201 54915503 -163121655 - AluSx SINE Alu -8 304 1 2020 104 69 0 chr3 54916195 54916483 -163120675 + AluSx SINE Alu 3 310 -2 619 178 78 44 chr3 54917078 54917258 -163119900 - L1ME4a LINE L1 -1 6120 5935 2067 137 0 13 chr3 54917296 54917603 -163119555 - AluSx SINE Alu -9 303 1 392 183 24 0 chr3 54917907 54917989 -163119169 + LTR16A1 LTR ERVL 374 457 0 311 85 0 0 chr3 54918142 54918189 -163118969 - Alu SINE Alu -4 298 252 * 318 153 3 0 chr3 54918173 54918232 -163118926 - Alu SINE Alu -260 48 1 324 268 134 7 chr3 54919112 54919254 -163117904 + MIR SINE MIR 28 187 -75 1047 279 116 14 chr3 54919262 54919700 -163117458 - LTR16C LTR ERVL -8 483 1 228 315 45 11 chr3 54919852 54919941 -163117217 - MIR SINE MIR -85 177 86 1149 111 0 20 chr3 54920799 54920983 -163116175 - AluSp SINE Alu 0 315 135 549 196 0 0 chr3 54920994 54921101 -163116057 - L1MB4 LINE L1 -42 6138 6032 491 226 187 26 chr3 54921181 54921336 -163115822 - MIR SINE MIR -49 213 34 351 324 77 24 chr3 54921994 54922164 -163114994 - MIR SINE MIR -2 260 82 237 318 130 13 chr3 54923285 54923439 -163113719 - MIR3 SINE MIR -12 196 25 1183 230 63 35 chr3 54923813 54924208 -163112950 + LTR16A1 LTR ERVL 52 457 0 2420 85 0 0 chr3 54925098 54925392 -163111766 - AluSq SINE Alu -19 294 1 304 264 0 0 chr3 54925441 54925528 -163111630 + L1ME4a LINE L1 5966 6052 -69 2069 138 10 0 chr3 54927377 54927675 -163109483 + AluSx SINE Alu 3 303 -9 713 249 104 71 chr3 54928885 54929195 -163107963 + MLT1I LTR MaLR 2 329 -80 2127 109 14 17 chr3 54929195 54929489 -163107669 - AluSx SINE Alu -19 293 1 713 249 104 71 chr3 54929489 54929571 -163107587 + MLT1I LTR MaLR 329 407 -2 2524 64 0 0 chr3 54929689 54929984 -163107174 + AluY SINE Alu 1 295 -16 1109 217 27 89 chr3 54930076 54930445 -163106713 - LTR16A LTR ERVL 0 450 105 224 163 20 20 chr3 54930948 54930997 -163106161 + (CA)n Simple_repeat Simple_repeat 2 50 0 351 270 40 32 chr3 54931258 54931384 -163105774 + MIR3 SINE MIR 35 161 -47 939 173 45 11 chr3 54931750 54931929 -163105229 - MER5A DNA MER1_type -1 188 4 24 0 0 0 chr3 54932015 54932039 -163105119 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 54932819 54932840 -163104318 + AT_rich Low_complexity Low_complexity 1 21 0 324 83 0 0 chr3 54933342 54933390 -163103768 + (CGG)n Simple_repeat Simple_repeat 1 48 0 218 104 0 42 chr3 54933708 54933756 -163103402 + (CGG)n Simple_repeat Simple_repeat 1 46 0 29 28 0 0 chr3 54934026 54934062 -163103096 + GC_rich Low_complexity Low_complexity 1 36 0 229 227 43 43 chr3 54934162 54934325 -163102833 + (CGGG)n Simple_repeat Simple_repeat 4 166 0 26 0 0 0 chr3 54934433 54934459 -163102699 + GC_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 54934703 54934724 -163102434 + GC_rich Low_complexity Low_complexity 1 21 0 248 231 15 15 chr3 54934823 54934888 -163102270 - MIR SINE MIR -57 151 87 219 273 80 23 chr3 54935677 54935765 -163101393 + MIR SINE MIR 92 184 -78 289 266 21 75 chr3 54936527 54936598 -163100560 + L2 LINE L2 3184 3250 -22 2315 112 0 0 chr3 54936598 54936901 -163100257 - AluSx SINE Alu -9 303 1 289 266 21 75 chr3 54936901 54936923 -163100235 + L2 LINE L2 3250 3272 0 604 259 118 0 chr3 54936948 54937118 -163100040 - MIR SINE MIR -15 247 58 1288 260 68 60 chr3 54937646 54937942 -163099216 + L2 LINE L2 2807 3110 -203 2084 128 0 0 chr3 54937942 54938231 -163098927 - AluSx SINE Alu -23 289 1 1288 260 68 60 chr3 54938231 54938437 -163098721 + L2 LINE L2 3110 3313 0 520 258 172 6 chr3 54939806 54939969 -163097189 - MIR SINE MIR -22 240 51 278 270 90 11 chr3 54940016 54940105 -163097053 - MIR SINE MIR -78 184 89 248 312 39 13 chr3 54940257 54940334 -163096824 + L2 LINE L2 3183 3261 -11 384 317 103 0 chr3 54941223 54941368 -163095790 + MIR SINE MIR 90 249 -13 553 303 7 7 chr3 54941593 54941738 -163095420 - MIR3 SINE MIR -25 183 39 753 265 65 39 chr3 54942270 54942500 -163094658 + MIR SINE MIR 17 252 -10 257 313 12 0 chr3 54943445 54943525 -163093633 + MER117 DNA MER1_type 6 86 -111 4588 132 30 36 chr3 54943525 54944046 -163093112 + L1MA10 LINE L1 5513 6036 -298 2776 104 46 10 chr3 54944046 54944459 -163092699 + MSTA LTR MaLR 1 428 0 4588 132 30 36 chr3 54944459 54944672 -163092486 + L1MA10 LINE L1 6036 6244 -90 2361 96 3 0 chr3 54944672 54944964 -163092194 + AluSp SINE Alu 1 293 -20 4588 132 30 36 chr3 54944964 54945054 -163092104 + L1MA10 LINE L1 6244 6333 -1 630 270 84 105 chr3 54945153 54945551 -163091607 + MLT1K LTR MaLR 2 386 -202 1188 179 111 92 chr3 54945551 54945877 -163091281 + THE1C LTR MaLR 1 336 -39 2478 82 0 0 chr3 54945877 54946181 -163090977 - AluY SINE Alu -7 304 1 1188 179 111 92 chr3 54946181 54946222 -163090936 + THE1C LTR MaLR 336 375 0 630 270 84 105 chr3 54946222 54946404 -163090754 + MLT1K LTR MaLR 386 570 -18 3306 106 83 10 chr3 54946654 54947145 -163090013 + MER1A DNA MER1_type 1 527 0 441 264 57 31 chr3 54947176 54947369 -163089789 + L1ME4a LINE L1 5630 5827 -294 870 176 31 57 chr3 54947893 54948086 -163089072 - MER5A DNA MER1_type -1 188 1 250 305 76 34 chr3 54948659 54948777 -163088381 + MIR3 SINE MIR 41 163 -45 444 238 13 74 chr3 54950363 54950504 -163086654 + MER5B DNA MER1_type 1 145 -44 2441 77 0 3 chr3 54950504 54950801 -163086357 + AluSq SINE Alu 1 296 -17 444 238 13 74 chr3 54950801 54950822 -163086336 + MER5B DNA MER1_type 145 166 -23 2198 70 16 57 chr3 54951881 54952195 -163084963 + AluSc SINE Alu 1 301 -8 210 339 114 39 chr3 54952633 54953064 -163084094 - L2 LINE L2 -2 3270 2808 648 271 32 44 chr3 54953541 54953792 -163083366 - LTR16A1 LTR ERVL -49 408 161 316 252 99 18 chr3 54954017 54954144 -163083014 - MIR SINE MIR -68 140 35 342 0 0 0 chr3 54954842 54954880 -163082278 + (TG)n Simple_repeat Simple_repeat 2 39 0 504 0 0 0 chr3 54955248 54955304 -163081854 + (TTTTA)n Simple_repeat Simple_repeat 1 56 0 1985 103 63 0 chr3 54955307 54955578 -163081580 - AluSq SINE Alu -25 288 1 763 181 43 16 chr3 54955615 54955803 -163081355 - L1ME3A LINE L1 -71 6099 5907 2383 155 46 0 chr3 54955805 54956218 -163080940 + MSTB1 LTR MaLR 1 432 0 407 130 0 100 chr3 54956519 54956619 -163080539 - MER5B DNA MER1_type 0 178 89 457 266 6 62 chr3 54956905 54957082 -163080076 + MIR SINE MIR 82 248 -14 532 249 156 12 chr3 54958254 54958427 -163078731 + MLT1L LTR MaLR 409 606 -9 188 298 87 19 chr3 54958452 54958556 -163078602 - MIR3 SINE MIR -95 113 3 632 263 90 50 chr3 54959003 54959304 -163077854 - MLT1L LTR MaLR -47 568 256 289 311 0 14 chr3 54959309 54959383 -163077775 - MIR SINE MIR -158 104 32 965 158 76 109 chr3 54959383 54959573 -163077585 - MER33 DNA MER1_type -2266 319 143 1756 83 0 5 chr3 54959573 54959789 -163077369 - AluSc SINE Alu -94 215 1 965 158 76 109 chr3 54959789 54959927 -163077231 - MER33 DNA MER1_type -2442 143 2 275 227 102 0 chr3 54960092 54960180 -163076978 + MIR3 SINE MIR 99 195 -13 908 268 135 38 chr3 54961310 54961807 -163075351 + MLT1H LTR MaLR 1 545 -4 243 231 11 44 chr3 54961873 54961964 -163075194 - L1P LINE L1 -2187 3959 3872 2202 108 7 0 chr3 54961989 54962285 -163074873 - AluSp SINE Alu -15 298 1 2008 251 33 3 chr3 54962294 54962895 -163074263 - L1M4 LINE L1 -1675 4471 3853 1804 281 44 28 chr3 54962910 54963479 -163073679 + MLT1E LTR MaLR 14 591 -2 246 247 14 27 chr3 54963503 54963576 -163073582 - L1M4 LINE L1 -2333 3813 3742 1158 198 24 0 chr3 54963613 54963820 -163073338 - U3 snRNA snRNA 0 217 6 2196 99 0 3 chr3 54963842 54964126 -163073032 - AluSq SINE Alu -30 283 1 786 217 103 63 chr3 54964146 54964306 -163072852 - L1M4 LINE L1 -2409 3737 3585 1587 169 16 77 chr3 54964306 54964619 -163072539 - AluJo SINE Alu -12 300 7 786 217 103 63 chr3 54964619 54964758 -163072400 - L1M4 LINE L1 -2561 3585 3426 2272 95 10 0 chr3 54965152 54965447 -163071711 + AluSg SINE Alu 1 298 -12 1693 234 108 21 chr3 54965591 54966151 -163071007 - MLT1G3 LTR MaLR 0 530 1 180 0 0 0 chr3 54966528 54966548 -163070610 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1201 263 129 26 chr3 54967445 54967871 -163069287 - MLT1F LTR MaLR -72 470 1 2131 157 60 45 chr3 54968201 54968621 -163068537 + MSTB LTR MaLR 1 426 0 239 219 202 26 chr3 54968706 54968820 -163068338 + L2 LINE L2 3180 3313 0 194 313 81 0 chr3 54968833 54968932 -163068226 - MIR SINE MIR -109 153 47 2896 229 85 12 chr3 54969967 54970733 -163066425 + L1ME2 LINE L1 5343 6164 0 1941 92 24 0 chr3 54970739 54971014 -163066144 + AluY SINE Alu 34 314 0 351 293 95 34 chr3 54971042 54971189 -163065969 - MER117 DNA MER1_type -2 195 40 235 326 51 0 chr3 54971923 54972021 -163065137 + MIR SINE MIR 111 213 -49 982 138 85 92 chr3 54972604 54972828 -163064330 + L1ME2 LINE L1 5888 6284 -50 2370 114 0 0 chr3 54972828 54973136 -163064022 + AluSx SINE Alu 1 308 -4 982 138 85 92 chr3 54973136 54973187 -163063971 + L1ME2 LINE L1 6284 6334 0 367 275 24 82 chr3 54973565 54973772 -163063386 + MLT1K LTR MaLR 2 196 -392 352 280 61 38 chr3 54973857 54973989 -163063169 + MLT1K LTR MaLR 446 580 -8 1614 168 0 11 chr3 54974686 54974954 -163062204 + AluJb SINE Alu 39 303 -9 1020 278 53 42 chr3 54975171 54976153 -163061005 - L1MEd LINE L1 -4621 1689 631 271 354 66 29 chr3 54976155 54976429 -163060729 - L1MEd LINE L1 -5510 609 326 211 225 0 0 chr3 54976758 54976798 -163060360 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 1500 125 83 130 chr3 54976809 54977170 -163059988 + MER2 DNA MER2_type 1 344 0 2245 122 0 0 chr3 54977567 54977870 -163059288 - AluSg SINE Alu -7 303 1 24 32 0 0 chr3 54978519 54978550 -163058608 + AT_rich Low_complexity Low_complexity 1 31 0 2067 116 0 7 chr3 54978778 54979097 -163058061 + AluSx SINE Alu 1 317 0 217 327 58 19 chr3 54979770 54979874 -163057284 + MIR SINE MIR 31 138 -70 192 152 0 0 chr3 54979875 54979908 -163057250 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 350 213 170 0 chr3 54980039 54980133 -163057025 - MIR SINE MIR -66 196 87 255 333 92 0 chr3 54980945 54981086 -163056072 - MIR SINE MIR -90 172 19 1114 238 126 40 chr3 54981750 54982170 -163054988 - LTR16A1 LTR ERVL 0 457 2 294 330 46 0 chr3 54982739 54982848 -163054310 - MLT1L LTR MaLR 0 615 502 550 318 13 34 chr3 54983029 54983262 -163053896 - ERVL LTR ERVL -365 5399 5172 711 306 85 20 chr3 54983549 54983958 -163053200 - LTR33 LTR ERVL -49 472 11 650 294 52 28 chr3 54983983 54984451 -163052707 - ERVL LTR ERVL -894 4870 4356 16194 174 22 18 chr3 54984464 54989912 -163047246 + L1MA4 LINE L1 4 5485 -997 2352 85 0 10 chr3 54989912 54990207 -163046951 - AluSc SINE Alu -17 292 1 16194 174 22 18 chr3 54990207 54991181 -163045977 + L1MA4 LINE L1 5485 6453 -29 4458 302 90 42 chr3 54991183 54992447 -163044711 - ERVL LTR ERVL -1420 4344 3142 1736 171 0 27 chr3 54992447 54992763 -163044395 - AluJb SINE Alu 0 308 1 4458 302 90 42 chr3 54992763 54993823 -163043335 - ERVL LTR ERVL -2622 3142 1907 416 312 95 69 chr3 54994077 54994602 -163042556 - ERVL LTR ERVL -3939 1825 1287 733 217 19 6 chr3 54994620 54994781 -163042377 - MER5B DNA MER1_type -15 163 1 278 324 37 87 chr3 54994835 54995190 -163041968 - ERVL LTR ERVL -4559 1205 869 2349 110 67 14 chr3 54995668 54996014 -163041144 + THE1B LTR MaLR 1 364 0 628 301 129 33 chr3 54996021 54996440 -163040718 - LTR67 LTR ERVL -32 525 67 1757 181 32 26 chr3 54996445 54996567 -163040591 - MLT2C1 LTR ERVL -53 344 224 2159 111 10 0 chr3 54996567 54996856 -163040302 - AluSp SINE Alu -20 293 2 1757 181 32 26 chr3 54996856 54997075 -163040083 - MLT2C1 LTR ERVL -173 224 1 290 279 103 7 chr3 54997221 54997357 -163039801 - MIR SINE MIR -9 253 105 616 255 22 16 chr3 54997532 54997716 -163039442 - MER5A DNA MER1_type -4 185 1 242 229 16 0 chr3 54998326 54998387 -163038771 + MIR SINE MIR 110 171 -91 2212 156 41 14 chr3 54998952 54999354 -163037804 + MER95 LTR ERV 1 416 -15 2263 112 7 0 chr3 54999354 54999658 -163037500 - AluSx SINE Alu -6 306 1 2212 156 41 14 chr3 54999658 54999673 -163037485 + MER95 LTR ERV 416 429 -2 1413 208 78 33 chr3 55000311 55000671 -163036487 - MLT1B LTR MaLR 0 390 15 655 278 25 0 chr3 55000782 55000944 -163036214 - MER117 DNA MER1_type -1 196 31 330 309 0 0 chr3 55000954 55001051 -163036107 - MLT1K LTR MaLR -11 577 481 451 264 75 88 chr3 55001084 55001323 -163035835 - MLT1K LTR MaLR -219 369 134 662 247 105 39 chr3 55001424 55001867 -163035291 - MER34B LTR ERV1 0 565 25 2204 86 0 10 chr3 55002787 55003088 -163034070 + AluY SINE Alu 1 298 -13 318 299 0 13 chr3 55003160 55003237 -163033921 + MIR SINE MIR 29 104 -158 1940 152 0 0 chr3 55003248 55003558 -163033600 - AluSx SINE Alu -2 310 1 1667 165 7 3 chr3 55004026 55004311 -163032847 - AluJb SINE Alu -26 286 1 267 258 15 0 chr3 55004334 55004400 -163032758 + MLT1K LTR MaLR 180 246 -342 1782 141 3 3 chr3 55004412 55004720 -163032438 - AluSx SINE Alu 0 308 1 276 163 0 0 chr3 55005021 55005064 -163032094 - U2 snRNA snRNA -145 43 1 277 315 149 11 chr3 55006702 55006883 -163030275 - MIR SINE MIR -10 252 47 684 272 93 38 chr3 55007502 55008141 -163029017 - L1MC4a LINE L1 -454 5667 5264 370 102 5 19 chr3 55008280 55008359 -163028799 - MLT2A1 LTR ERVL 0 444 395 185 95 0 63 chr3 55008359 55008422 -163028736 + (TA)n Simple_repeat Simple_repeat 1 59 0 2955 72 25 15 chr3 55008441 55008841 -163028317 - MLT2A1 LTR ERVL -40 404 1 3194 233 37 51 chr3 55009286 55010020 -163027138 + L1M4b LINE L1 650 1393 -5745 2163 98 3 0 chr3 55010020 55010316 -163026842 - AluSp SINE Alu -16 297 1 3194 233 37 51 chr3 55010316 55011278 -163025880 + L1M4b LINE L1 1393 2723 -4415 322 241 24 24 chr3 55011278 55011361 -163025797 + L1MEc LINE L1 1738 1820 -4576 2207 104 0 3 chr3 55011414 55011722 -163025436 + AluY SINE Alu 1 307 -4 3424 209 55 70 chr3 55011823 55012311 -163024847 + L1MEc LINE L1 1868 2362 -3853 1943 158 42 6 chr3 55012311 55012647 -163024511 - MER7A DNA MER2_type 0 346 1 3424 209 55 70 chr3 55012647 55013373 -163023785 + L1MEc LINE L1 2362 3025 -3190 1818 154 10 26 chr3 55013373 55013685 -163023473 + AluSx SINE Alu 4 310 -2 3424 209 55 70 chr3 55013685 55013902 -163023256 + L1MEc LINE L1 3025 3244 -2971 546 237 59 0 chr3 55013905 55014040 -163023118 + MER45R DNA AcHobo 1438 1580 -1 192 343 55 41 chr3 55014157 55014303 -163022855 + L2 LINE L2 2829 2976 -338 9012 117 100 33 chr3 55014685 55016278 -163020880 + pTR5 LTR ERV1 740 2438 0 429 323 24 6 chr3 55016283 55016450 -163020708 + MIR SINE MIR 58 227 -35 517 234 47 129 chr3 55016648 55016926 -163020232 - MIR SINE MIR -5 257 3 1550 116 127 0 chr3 55016951 55017218 -163019940 - AluSx SINE Alu -11 301 1 191 316 0 63 chr3 55017236 55017315 -163019843 - MIR SINE MIR -29 233 160 419 318 15 15 chr3 55017772 55017904 -163019254 - MIR SINE MIR -130 132 1 270 0 0 0 chr3 55017922 55017952 -163019206 + (T)n Simple_repeat Simple_repeat 1 30 0 332 308 11 0 chr3 55018003 55018094 -163019064 - MLT1J1 LTR MaLR -284 162 71 466 222 136 19 chr3 55018285 55018447 -163018711 + MIR3 SINE MIR 17 197 -11 24 0 0 0 chr3 55018800 55018824 -163018334 + AT_rich Low_complexity Low_complexity 1 24 0 315 256 85 47 chr3 55018887 55019016 -163018142 + MIR SINE MIR 34 167 -95 * 742 231 22 52 chr3 55019011 55019240 -163017918 + L2 LINE L2 3085 3306 -7 204 296 0 49 chr3 55019235 55019316 -163017842 + MIR SINE MIR 186 262 0 * 556 327 93 19 chr3 55019334 55019744 -163017414 - L2 LINE L2 -62 3251 2812 333 268 67 71 chr3 55020453 55020677 -163016481 - L2 LINE L2 -669 2645 2423 2161 185 13 6 chr3 55021133 55021590 -163015568 + MER89 LTR ERV1 1 559 0 2672 65 128 8 chr3 55021633 55022033 -163015125 - LTR7 LTR ERV1 -2 448 1 344 265 59 0 chr3 55022383 55022485 -163014673 + MIR SINE MIR 24 131 -77 392 310 16 11 chr3 55022515 55022699 -163014459 + MER5A DNA MER1_type 1 185 -4 309 268 104 93 chr3 55022987 55023018 -163014140 - MLT1H LTR MaLR -7 542 513 2096 107 3 0 chr3 55023018 55023309 -163013849 + AluSx SINE Alu 1 292 -20 309 268 104 93 chr3 55023309 55023460 -163013698 - MLT1H LTR MaLR -36 513 358 1087 217 12 15 chr3 55023610 55023852 -163013306 - MLT1H LTR MaLR -265 284 1 647 229 40 17 chr3 55024074 55024249 -163012909 - MER97b DNA MER1_type? -874 179 1 345 327 28 0 chr3 55024423 55024530 -163012628 - MIR SINE MIR -92 170 61 1815 94 112 25 chr3 55024530 55024816 -163012342 + AluY SINE Alu 1 311 0 769 279 41 0 chr3 55024967 55025164 -163011994 + MER63A DNA MER1_type 1 205 -5 1786 110 28 0 chr3 55025271 55025525 -163011633 + AluSg SINE Alu 41 301 -9 280 160 0 20 chr3 55025799 55025849 -163011309 - MER50-int LTR ERV1 -7156 49 1 4327 130 21 37 chr3 55025850 55026460 -163010698 - MER50 LTR ERV1 -23 711 113 1349 152 159 11 chr3 55026460 55026724 -163010434 + AluSq SINE Alu 1 303 0 4327 130 21 37 chr3 55026724 55026836 -163010322 - MER50 LTR ERV1 -621 113 1 1492 201 131 25 chr3 55026892 55027290 -163009868 + MER74B LTR ERVL 1 440 -182 536 213 22 5 chr3 55028730 55028872 -163008286 + L1ME1 LINE L1 6020 6163 -1 438 180 60 0 chr3 55029055 55029155 -163008003 + MER5B DNA MER1_type 36 141 -37 269 308 0 0 chr3 55029550 55029628 -163007530 + MIR3 SINE MIR 94 171 -37 1522 183 148 20 chr3 55030402 55030806 -163006352 - MLT1C LTR MaLR -1 466 11 346 229 18 37 chr3 55031160 55031269 -163005889 + MER110A LTR ERV1 70 176 -292 1454 173 44 0 chr3 55031441 55031690 -163005468 + AluJb SINE Alu 1 260 -52 237 283 54 11 chr3 55031809 55031901 -163005257 + MER110 LTR ERV1 394 489 -2 387 0 0 0 chr3 55031930 55031973 -163005185 + (CA)n Simple_repeat Simple_repeat 2 44 0 2300 66 0 0 chr3 55031981 55032267 -163004891 - AluY SINE Alu -25 286 1 184 125 94 0 chr3 55032368 55032400 -163004758 + MIR SINE MIR 132 166 -96 502 277 90 18 chr3 55033206 55033511 -163003647 - L1MC4 LINE L1 -314 7728 7292 244 266 0 0 chr3 55033622 55033686 -163003472 - L1ME LINE L1 -562 5559 5496 227 344 102 25 chr3 55034441 55034598 -163002560 + L2 LINE L2 3077 3245 -27 2902 224 91 12 chr3 55035288 55036094 -163001064 - L1ME1 LINE L1 -94 6072 5207 586 286 106 9 chr3 55036656 55036873 -163000285 - MIR SINE MIR -12 250 13 1622 173 59 78 chr3 55037109 55037279 -162999879 + MLT1C LTR MaLR 2 174 -293 2017 144 0 0 chr3 55037279 55037591 -162999567 - AluSx SINE Alu 0 312 1 1622 173 59 78 chr3 55037591 55037895 -162999263 + MLT1C LTR MaLR 174 467 0 230 217 179 19 chr3 55038036 55038142 -162999016 + MLT2E LTR ERVL 506 628 0 449 254 23 8 chr3 55038372 55038502 -162998656 + MLT2E LTR ERVL 1 132 -496 453 249 24 30 chr3 55040095 55040260 -162996898 - L1ME4a LINE L1 -7 6114 5951 682 263 19 76 chr3 55040341 55040438 -162996720 - MIR SINE MIR -10 252 151 1998 127 0 0 chr3 55040438 55040742 -162996416 - AluSx SINE Alu 0 304 1 682 263 19 76 chr3 55040742 55040905 -162996253 - MIR SINE MIR -111 151 6 200 176 0 0 chr3 55041027 55041061 -162996097 - L2 LINE L2 -20 3252 3219 262 373 79 0 chr3 55041995 55042172 -162994986 - MIR SINE MIR -22 240 50 633 275 132 41 chr3 55043240 55043868 -162993290 - L2 LINE L2 0 3313 2618 206 146 49 0 chr3 55043901 55043942 -162993216 - L2 LINE L2 -803 2511 2469 249 158 51 9 chr3 55044034 55044095 -162993063 - MIR SINE MIR -68 140 73 790 280 114 30 chr3 55044778 55045139 -162992019 - LTR33 LTR ERVL -121 400 10 2256 89 0 0 chr3 55045195 55045498 -162991660 + AluY SINE Alu 1 303 -8 248 332 166 21 chr3 55045509 55045750 -162991408 + L3b LINE CR1 1295 1570 -13 24 32 0 0 chr3 55046002 55046033 -162991125 + AT_rich Low_complexity Low_complexity 1 31 0 197 296 87 9 chr3 55046446 55046561 -162990597 - L2 LINE L2 -42 3271 3148 454 236 33 82 chr3 55047384 55047566 -162989592 - MER69A DNA AcHobo 0 177 5 268 263 53 11 chr3 55048607 55048702 -162988456 - MIR3 SINE MIR -42 166 68 210 189 27 0 chr3 55048805 55048842 -162988316 + MER91C DNA MER1_type 62 99 -41 234 174 0 0 chr3 55049021 55049067 -162988091 + A-rich Low_complexity Low_complexity 1 46 0 355 215 15 0 chr3 55049883 55049948 -162987210 + L2 LINE L2 3248 3313 0 198 222 37 111 chr3 55050502 55050583 -162986575 - MIR3 SINE MIR -21 187 113 387 250 19 10 chr3 55050792 55050896 -162986262 + L1MD3 LINE L1 7632 7736 -259 594 194 0 50 chr3 55050906 55051045 -162986113 + L1MD3 LINE L1 7864 7995 0 511 250 73 0 chr3 55051070 55051194 -162985964 + MLT1G1 LTR MaLR 1 133 -462 350 200 154 0 chr3 55051194 55051304 -162985854 + MIR SINE MIR 100 226 -36 258 328 23 16 chr3 55052261 55052389 -162984769 + MLT1K LTR MaLR 157 285 -303 1139 226 70 53 chr3 55052397 55052760 -162984398 + MLT1G LTR MaLR 1 356 -234 1832 175 5 66 chr3 55052760 55053155 -162984003 + MLT1A2 LTR MaLR 4 374 0 1139 226 70 53 chr3 55053155 55053288 -162983870 + MLT1G LTR MaLR 356 562 -28 1573 192 51 53 chr3 55053288 55053663 -162983495 - MLT1A2 LTR MaLR 0 374 1 1139 226 70 53 chr3 55053663 55053693 -162983465 + MLT1G LTR MaLR 562 590 0 479 227 98 93 chr3 55053724 55053949 -162983209 + MLT1K LTR MaLR 322 547 -41 704 308 47 19 chr3 55054078 55054533 -162982625 + MLT1L LTR MaLR 1 542 -73 279 316 51 0 chr3 55054579 55054696 -162982462 - MIR3 SINE MIR -34 174 52 2498 75 0 3 chr3 55054813 55055121 -162982037 - AluY SINE Alu -4 307 1 202 205 0 0 chr3 55055680 55055719 -162981439 + (CA)n Simple_repeat Simple_repeat 1 39 0 2286 105 14 0 chr3 55056170 55056465 -162980693 - AluSq SINE Alu -14 299 1 345 24 0 0 chr3 55056581 55056623 -162980535 + (TG)n Simple_repeat Simple_repeat 2 43 0 1173 183 97 14 chr3 55056723 55057013 -162980145 - MER33 DNA MER1_type -10 314 1 238 336 74 8 chr3 55057022 55057144 -162980014 + MIR SINE MIR 47 176 -86 431 288 81 30 chr3 55057210 55057408 -162979750 - MER63A DNA MER1_type 0 210 3 2266 109 3 3 chr3 55057768 55058071 -162979087 + AluSg SINE Alu 1 303 -7 291 245 20 10 chr3 55058873 55058975 -162978183 - L1ME4a LINE L1 -67 6054 5952 331 298 16 16 chr3 55058997 55059118 -162978040 - LTR16C LTR ERVL 0 491 371 374 254 112 15 chr3 55059993 55060127 -162977031 - L2 LINE L2 -2 3311 3165 1644 232 173 17 chr3 55060205 55060674 -162976484 - MLT1F LTR MaLR 0 542 1 265 261 0 0 chr3 55060863 55060928 -162976230 + MIR SINE MIR 3 67 -195 303 216 0 0 chr3 55060965 55061016 -162976142 + LTR67 LTR ERVL 507 557 0 1697 161 62 135 chr3 55061021 55061524 -162975634 - L1MC4a LINE L1 -187 7621 7156 550 214 0 0 chr3 55061524 55061622 -162975536 - MLT1F1 LTR MaLR -161 406 309 1306 164 53 11 chr3 55061738 55062019 -162975139 - L1MC4a LINE L1 -656 7152 6860 1219 223 109 0 chr3 55062056 55062330 -162974828 + AluJo SINE Alu 2 305 -7 343 195 13 13 chr3 55062363 55062440 -162974718 + L1MD3 LINE L1 7904 7980 -15 1601 169 70 0 chr3 55062490 55062763 -162974395 + AluJo SINE Alu 1 292 -20 445 208 69 0 chr3 55063910 55064011 -162973147 - MIR SINE MIR -108 154 47 827 201 89 0 chr3 55064064 55064233 -162972925 - MER5A DNA MER1_type 0 189 6 470 214 77 0 chr3 55064570 55064687 -162972471 - MLT1H1 LTR MaLR -45 510 385 357 285 86 32 chr3 55064730 55064916 -162972242 - MLT1H1 LTR MaLR -348 207 12 11483 170 25 71 chr3 55064932 55065617 -162971541 - L1PA16 LINE L1 -7 6159 5444 2172 133 3 3 chr3 55065617 55065926 -162971232 - AluSx SINE Alu -3 309 1 11483 170 25 71 chr3 55065926 55066254 -162970904 - L1PA16 LINE L1 -722 5444 5102 1993 129 35 0 chr3 55066254 55066540 -162970618 - AluJb SINE Alu -16 296 1 11483 170 25 71 chr3 55066540 55066677 -162970481 - L1PA16 LINE L1 -1064 5102 4960 2206 127 3 3 chr3 55066677 55066985 -162970173 - AluSx SINE Alu -4 308 1 11483 170 25 71 chr3 55066985 55068407 -162968751 - L1PA16 LINE L1 -1206 4960 3474 2239 104 3 7 chr3 55068407 55068706 -162968452 - AluSq SINE Alu -15 298 1 11483 170 25 71 chr3 55068706 55069079 -162968079 - L1PA16 LINE L1 -2692 3474 3085 833 184 0 0 chr3 55069079 55069204 -162967954 - AluSq/x SINE Alu -187 125 1 11483 170 25 71 chr3 55069204 55069507 -162967651 - L1PA16 LINE L1 -3081 3085 2985 1632 122 142 4 chr3 55069507 55069761 -162967397 - AluSx SINE Alu -23 289 1 11483 170 25 71 chr3 55069761 55070233 -162966925 - L1PA16 LINE L1 -3181 2985 2493 202 204 60 180 chr3 55070395 55070679 -162966479 + L2 LINE L2 3019 3268 -4 279 114 0 0 chr3 55070999 55071043 -162966115 + (TTCC)n Simple_repeat Simple_repeat 3 46 0 359 236 0 22 chr3 55071226 55071315 -162965843 + MER5A DNA MER1_type 9 95 -94 373 315 48 7 chr3 55071595 55071741 -162965417 - MIR SINE MIR -15 247 96 253 286 10 14 chr3 55072015 55072225 -162964933 + CT-rich Low_complexity Low_complexity 1 209 0 1053 221 20 20 chr3 55074174 55074423 -162962735 + MIR SINE MIR 12 260 -2 477 308 72 13 chr3 55074792 55075029 -162962129 - MIR SINE MIR -6 256 6 1912 169 0 7 chr3 55075179 55075480 -162961678 - AluSx SINE Alu -13 299 1 424 253 178 13 chr3 55075548 55075773 -162961385 - MIR SINE MIR 0 262 1 868 190 11 39 chr3 55075810 55075989 -162961169 + MER82 DNA MER2_type 1 174 -479 1889 212 25 0 chr3 55076006 55076365 -162960793 + MER82 DNA MER2_type 277 644 -9 14710 158 34 21 chr3 55076405 55078439 -162958719 + L1M1 LINE L1 15 2022 -5543 2494 78 3 0 chr3 55078439 55078746 -162958412 + AluY SINE Alu 1 308 -3 14710 158 34 21 chr3 55078746 55078921 -162958237 + L1M1 LINE L1 2022 2193 -5372 1974 146 0 24 chr3 55078921 55079215 -162957943 + AluSx SINE Alu 1 287 -25 14710 158 34 21 chr3 55079215 55079543 -162957615 + L1M1 LINE L1 2193 2585 -4980 502 240 85 0 chr3 55079529 55079658 -162957500 + L1M1 LINE L1 3845 3984 -3581 * 2899 92 70 13 chr3 55079650 55080171 -162956987 + L1M1 LINE L1 5163 5715 -589 2237 112 7 0 chr3 55080656 55080959 -162956199 + AluSp SINE Alu 2 306 -7 332 77 19 0 chr3 55081464 55081516 -162955642 + (GA)n Simple_repeat Simple_repeat 2 54 0 4925 56 3 0 chr3 55081860 55082449 -162954709 + LTR10C LTR ERV1 1 591 0 27 73 0 0 chr3 55082521 55082576 -162954582 + AT_rich Low_complexity Low_complexity 1 55 0 15325 187 23 23 chr3 55082576 55082765 -162954393 - L1PB1 LINE L1 -2 6865 6677 2577 47 3 3 chr3 55082765 55083066 -162954092 - AluY SINE Alu -10 301 1 15325 187 23 23 chr3 55083066 55084528 -162952630 - L1PB1 LINE L1 -190 6677 5216 3938 90 0 4 chr3 55084528 55085041 -162952117 - MER9 LTR ERVK 0 511 1 15325 187 23 23 chr3 55085041 55085330 -162951828 - L1PB1 LINE L1 -1651 5216 4928 2054 128 0 7 chr3 55085330 55085666 -162951492 - AluSg SINE Alu 0 334 1 15325 187 23 23 chr3 55085666 55087720 -162949438 - L1PB1 LINE L1 -1939 4928 2835 2310 125 0 0 chr3 55087720 55088032 -162949126 - AluSx SINE Alu 0 312 1 15325 187 23 23 chr3 55088032 55089557 -162947601 - L1PB1 LINE L1 -4032 2835 1311 4311 216 89 4 chr3 55089563 55090624 -162946534 - L1PB1 LINE L1 -5706 1157 6 194 330 19 0 chr3 55090750 55090853 -162946305 + L2 LINE L2 1575 1679 -1635 1775 172 10 16 chr3 55090871 55091179 -162945979 - AluJo SINE Alu -4 308 3 759 203 131 34 chr3 55091214 55091451 -162945707 + L1MC4a LINE L1 7354 7613 -195 270 221 60 121 chr3 55091423 55091459 -162945699 + L1M4 LINE L1 3963 4000 -2146 * 1468 220 141 39 chr3 55091459 55091949 -162945209 - MLT1F LTR MaLR -2 540 1 270 221 60 121 chr3 55091949 55092061 -162945097 + L1M4 LINE L1 4000 4102 -2044 2278 155 26 83 chr3 55092430 55092608 -162944550 - MLT1D LTR MaLR 0 505 318 2223 123 10 0 chr3 55092608 55092918 -162944240 - AluSq SINE Alu 0 313 1 2278 155 26 83 chr3 55092918 55092929 -162944229 - MLT1D LTR MaLR -187 318 308 3103 146 27 12 chr3 55092929 55093490 -162943668 - L1MB3 LINE L1 0 6183 5615 2278 155 26 83 chr3 55093490 55093827 -162943331 - MLT1D LTR MaLR -197 308 8 346 294 89 7 chr3 55094410 55094556 -162942602 + MIR3 SINE MIR 36 193 -15 428 250 118 11 chr3 55094566 55094726 -162942432 + MIR3 SINE MIR 20 197 -11 466 231 224 0 chr3 55094726 55094873 -162942285 - MER5A DNA MER1_type 0 189 10 2153 117 3 0 chr3 55095072 55095376 -162941782 + AluSx SINE Alu 1 305 0 2442 166 72 32 chr3 55095393 55095922 -162941236 + MER44D DNA MER2_type 1 605 0 408 248 75 25 chr3 55095956 55096117 -162941041 + LTR37B LTR ERV1 197 365 -103 28 48 0 0 chr3 55096646 55096688 -162940470 + GC_rich Low_complexity Low_complexity 1 42 0 498 208 21 10 chr3 55098133 55098229 -162938929 + MER68 LTR ERV1 463 559 -3 404 223 179 69 chr3 55098230 55098504 -162938654 - L1ME LINE L1 -500 5621 5318 2466 81 0 0 chr3 55098505 55098814 -162938344 - AluY SINE Alu -2 309 1 2255 52 44 0 chr3 55098827 55099142 -162938016 - AluY SINE Alu 0 327 1 2113 91 14 14 chr3 55099408 55099705 -162937453 + AluSg SINE Alu 3 299 -11 32 26 0 0 chr3 55099735 55099774 -162937384 + AT_rich Low_complexity Low_complexity 1 39 0 2054 131 30 7 chr3 55100492 55100797 -162936361 - AluSx SINE Alu 0 312 1 424 206 14 110 chr3 55101434 55101497 -162935661 + L2 LINE L2 3168 3211 -102 2305 123 0 0 chr3 55101497 55101805 -162935353 + AluSg SINE Alu 1 308 -2 424 206 14 110 chr3 55101805 55101887 -162935271 + L2 LINE L2 3211 3299 -14 853 182 0 0 chr3 55101887 55102055 -162935103 + FRAM SINE Alu 8 175 0 502 281 101 28 chr3 55102917 55103095 -162934063 + MIR SINE MIR 4 194 -68 260 314 85 29 chr3 55104450 55104634 -162932524 + MIR SINE MIR 7 210 -52 760 204 133 31 chr3 55104839 55105065 -162932093 - MIR SINE MIR 0 262 14 469 259 59 7 chr3 55105087 55105222 -162931936 - MIR3 SINE MIR -61 147 6 198 258 86 65 chr3 55106961 55107054 -162930104 - L2 LINE L2 -11 3261 3167 261 0 0 0 chr3 55107669 55107698 -162929460 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 870 117 0 7 chr3 55107702 55107839 -162929319 + MER41A LTR ERV1 413 548 -6 2328 107 28 3 chr3 55107845 55108172 -162928986 - L1PB1 LINE L1 -1 6150 5816 2377 74 7 0 chr3 55109015 55109312 -162927846 - AluY SINE Alu -11 300 2 1946 155 0 3 chr3 55109434 55109718 -162927440 + AluJb SINE Alu 13 295 -17 1760 165 21 7 chr3 55109833 55110118 -162927040 - AluJb SINE Alu -23 289 1 859 258 29 29 chr3 55110230 55110474 -162926684 + MIR SINE MIR 16 259 -3 936 218 39 19 chr3 55110476 55110682 -162926476 - MER63A DNA MER1_type 0 210 1 2464 87 3 0 chr3 55111026 55111338 -162925820 + AluSp SINE Alu 1 313 0 1980 94 4 0 chr3 55111517 55111772 -162925386 - AluSq SINE Alu -11 302 47 544 284 149 5 chr3 55112009 55112203 -162924955 + MIR SINE MIR 29 250 -12 1613 99 43 0 chr3 55112878 55113089 -162924069 - AluSx SINE Alu -92 220 1 927 147 0 22 chr3 55113320 55113456 -162923702 - FLAM_C SINE Alu 0 133 1 1047 249 160 25 chr3 55113885 55114242 -162922916 - MLT1I LTR MaLR -3 406 2 229 304 216 8 chr3 55114459 55114584 -162922574 - MER5A DNA MER1_type -3 186 36 * 238 269 0 0 chr3 55114534 55114586 -162922572 + MER5A DNA MER1_type 116 167 -22 24 0 0 0 chr3 55116158 55116182 -162920976 + AT_rich Low_complexity Low_complexity 1 24 0 398 317 109 13 chr3 55116660 55117013 -162920145 + LTR33A LTR ERVL 8 422 -101 192 40 0 0 chr3 55117393 55117418 -162919740 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 349 228 52 121 chr3 55118649 55118881 -162918277 - MLT1K LTR MaLR 0 588 373 2490 196 32 16 chr3 55119281 55119782 -162917376 - LTR22 LTR ERVK 0 509 1 4223 123 25 12 chr3 55119893 55120541 -162916617 - L1PA13 LINE L1 0 6163 5508 315 340 97 16 chr3 55121582 55121767 -162915391 - MIR SINE MIR -12 250 51 767 273 10 5 chr3 55122177 55122386 -162914772 + L1ME LINE L1 5533 5742 -379 22 35 0 0 chr3 55122466 55122495 -162914663 + AT_rich Low_complexity Low_complexity 1 29 0 688 218 47 29 chr3 55122791 55122961 -162914197 + FRAM SINE Alu 1 173 -3 188 274 20 69 chr3 55123369 55123471 -162913687 + MIR3 SINE MIR 104 200 -8 665 185 62 14 chr3 55123543 55123689 -162913469 - MIR SINE MIR -2 260 108 2284 108 0 0 chr3 55123768 55124064 -162913094 + AluSx SINE Alu 1 296 -16 411 21 0 0 chr3 55124079 55124127 -162913031 + (GA)n Simple_repeat Simple_repeat 2 49 0 773 176 30 15 chr3 55124344 55124475 -162912683 + FLAM_A SINE Alu 1 133 0 1075 211 5 5 chr3 55124766 55124975 -162912183 + MER3 DNA MER1_type 1 209 0 2431 85 0 0 chr3 55124995 55125301 -162911857 + AluY SINE Alu 1 306 -5 1210 209 37 0 chr3 55126736 55126951 -162910207 + MER58A DNA MER1_type 1 223 -1 748 268 30 43 chr3 55126961 55127192 -162909966 + MIR SINE MIR 11 238 -24 372 233 89 4 chr3 55129127 55129369 -162907789 - L1ME4a LINE L1 -121 6000 5712 869 212 237 7 chr3 55129370 55129644 -162907514 + MER46C DNA MER2_type 1 337 -1 270 280 65 19 chr3 55129693 55129800 -162907358 - MIR SINE MIR -15 247 136 1668 173 187 41 chr3 55129894 55130258 -162906900 - MER47B DNA MER2_type 0 418 2 284 200 245 0 chr3 55130259 55130369 -162906789 - L1ME4a LINE L1 -446 5675 5539 242 232 26 53 chr3 55130382 55130533 -162906625 - L1P5 LINE L1 -720 5431 5285 1524 149 8 8 chr3 55131516 55131771 -162905387 - AluSx SINE Alu -13 299 45 688 196 17 113 chr3 55132138 55132368 -162904790 - L1MD2 LINE L1 -17 6342 6135 185 152 22 0 chr3 55132368 55132376 -162904782 + (TAG)n Simple_repeat Simple_repeat 2 8 -40 1449 145 189 44 chr3 55132376 55132693 -162904465 - MER47A DNA MER2_type -1 365 3 185 152 22 0 chr3 55132693 55132730 -162904428 + (TAG)n Simple_repeat Simple_repeat 8 48 0 350 140 0 0 chr3 55132730 55132780 -162904378 - L1MD2 LINE L1 -226 6133 6084 264 59 0 0 chr3 55134100 55134134 -162903024 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 591 155 29 0 chr3 55135501 55135604 -162901554 - MER5A DNA MER1_type 0 189 84 337 258 34 97 chr3 55135787 55136003 -162901155 - L1ME3 LINE L1 -4 6166 5955 2329 107 3 0 chr3 55136013 55136323 -162900835 - AluSq SINE Alu -2 311 1 574 146 15 95 chr3 55136391 55136442 -162900716 - L1MB3 LINE L1 -1 6182 6128 2500 72 0 7 chr3 55136442 55136747 -162900411 - AluY SINE Alu -8 303 1 574 146 15 95 chr3 55136747 55136832 -162900326 - L1MB3 LINE L1 -55 6128 6057 255 227 61 0 chr3 55136853 55136919 -162900239 - L1ME3 LINE L1 -223 5939 5870 873 262 33 50 chr3 55136934 55137293 -162899865 - L1MC4 LINE L1 0 8042 7690 2822 179 113 23 chr3 55137318 55137892 -162899266 - MLT1E2 LTR MaLR 0 626 1 1943 165 0 0 chr3 55137901 55138204 -162898954 - AluJb SINE Alu -9 303 1 1155 162 154 38 chr3 55138209 55138475 -162898683 - AluY SINE Alu 0 301 5 592 217 46 107 chr3 55138963 55139244 -162897914 + L2 LINE L2 3050 3313 0 334 239 159 0 chr3 55139243 55139331 -162897827 - MIR SINE MIR -116 146 45 * 2840 10 3 0 chr3 55140192 55140501 -162896657 - AluYb8 SINE Alu -8 310 1 9150 188 56 100 chr3 55141100 55143970 -162893188 + L1MDa LINE L1 20 2763 -3777 320 220 90 0 chr3 55144048 55144148 -162893010 + L1MDa LINE L1 2734 2842 -3698 * 4030 182 38 6 chr3 55144147 55145711 -162891447 - L1M4 LINE L1 -2912 3470 1851 1893 176 18 76 chr3 55145711 55146108 -162891050 - MLT1A2 LTR MaLR 0 374 1 2421 66 0 3 chr3 55146129 55146430 -162890728 + AluY SINE Alu 1 300 -11 2475 59 0 13 chr3 55146434 55146741 -162890417 + AluY SINE Alu 1 303 -8 2200 109 3 7 chr3 55146742 55147044 -162890114 + AluY SINE Alu 1 301 -10 3112 92 12 46 chr3 55147045 55147214 -162889944 + L1M1 LINE L1 2105 2278 -5287 1942 150 0 24 chr3 55147214 55147508 -162889650 + AluSx SINE Alu 1 287 -25 3112 92 12 46 chr3 55147508 55147836 -162889322 + L1M1 LINE L1 2278 2585 -4980 504 240 85 0 chr3 55147822 55147951 -162889207 + L1MDa LINE L1 2820 2959 -3581 * 2922 92 70 13 chr3 55147943 55148464 -162888694 + L1M1 LINE L1 5163 5715 -589 2226 112 7 0 chr3 55148949 55149252 -162887906 + AluSp SINE Alu 2 306 -7 332 77 19 0 chr3 55149757 55149809 -162887349 + (GA)n Simple_repeat Simple_repeat 2 54 0 5126 58 3 0 chr3 55150153 55150742 -162886416 + LTR10C LTR ERV1 1 591 0 28 71 0 0 chr3 55150813 55150869 -162886289 + AT_rich Low_complexity Low_complexity 1 56 0 15281 187 23 23 chr3 55150869 55151058 -162886100 - L1PB1 LINE L1 -2 6865 6677 2624 43 3 0 chr3 55151058 55151359 -162885799 - AluY SINE Alu -9 302 1 15281 187 23 23 chr3 55151359 55152821 -162884337 - L1PB1 LINE L1 -190 6677 5216 3957 88 0 4 chr3 55152821 55153334 -162883824 - MER9 LTR ERVK 0 511 1 15281 187 23 23 chr3 55153334 55153623 -162883535 - L1PB1 LINE L1 -1651 5216 4928 2054 128 0 7 chr3 55153623 55153959 -162883199 - AluSg SINE Alu 0 334 1 15281 187 23 23 chr3 55153959 55156013 -162881145 - L1PB1 LINE L1 -1939 4928 2835 2310 125 0 0 chr3 55156013 55156325 -162880833 - AluSx SINE Alu 0 312 1 15281 187 23 23 chr3 55156325 55157850 -162879308 - L1PB1 LINE L1 -4032 2835 1311 4213 219 89 5 chr3 55157856 55158918 -162878240 - L1PB1 LINE L1 -5706 1157 6 194 330 19 0 chr3 55159044 55159147 -162878011 + L2 LINE L2 1575 1679 -1635 1775 172 10 16 chr3 55159165 55159473 -162877685 - AluJo SINE Alu -4 308 3 759 203 131 34 chr3 55159508 55159745 -162877413 + L1MC4a LINE L1 7354 7613 -195 270 221 60 121 chr3 55159717 55159753 -162877405 + L1M4 LINE L1 3963 4000 -2146 * 1484 218 141 39 chr3 55159753 55160243 -162876915 - MLT1F LTR MaLR -2 540 1 270 221 60 121 chr3 55160243 55160355 -162876803 + L1M4 LINE L1 4000 4102 -2044 2278 155 26 83 chr3 55160724 55160902 -162876256 - MLT1D LTR MaLR 0 505 318 2216 123 10 0 chr3 55160902 55161211 -162875947 - AluSq SINE Alu -1 312 1 2278 155 26 83 chr3 55161211 55161222 -162875936 - MLT1D LTR MaLR -187 318 308 3120 148 25 11 chr3 55161222 55161783 -162875375 - L1MB3 LINE L1 0 6183 5615 2278 155 26 83 chr3 55161783 55162120 -162875038 - MLT1D LTR MaLR -197 308 8 327 301 89 7 chr3 55162702 55162848 -162874310 + MIR3 SINE MIR 36 193 -15 428 250 118 11 chr3 55162858 55163018 -162874140 + MIR3 SINE MIR 20 197 -11 466 231 224 0 chr3 55163018 55163165 -162873993 - MER5A DNA MER1_type 0 189 10 2153 117 3 0 chr3 55163364 55163668 -162873490 + AluSx SINE Alu 1 305 0 2442 166 72 32 chr3 55163685 55164214 -162872944 + MER44D DNA MER2_type 1 605 0 408 248 75 25 chr3 55164248 55164409 -162872749 + LTR37B LTR ERV1 197 365 -103 28 48 0 0 chr3 55164938 55164980 -162872178 + GC_rich Low_complexity Low_complexity 1 42 0 498 208 21 10 chr3 55166425 55166521 -162870637 + MER68 LTR ERV1 463 559 -3 404 223 179 69 chr3 55166522 55166796 -162870362 - L1ME LINE L1 -500 5621 5318 2253 80 30 0 chr3 55166797 55167097 -162870061 - AluY SINE Alu -2 309 1 2242 55 44 0 chr3 55167110 55167425 -162869733 - AluY SINE Alu 0 327 1 2113 91 14 14 chr3 55167691 55167988 -162869170 + AluSg SINE Alu 3 299 -11 32 26 0 0 chr3 55168018 55168057 -162869101 + AT_rich Low_complexity Low_complexity 1 39 0 2054 131 30 7 chr3 55168775 55169080 -162868078 - AluSx SINE Alu 0 312 1 422 210 14 91 chr3 55169717 55169777 -162867381 + L2 LINE L2 3168 3231 -82 2321 123 0 0 chr3 55169777 55170085 -162867073 + AluSg SINE Alu 1 308 -2 422 210 14 91 chr3 55170085 55170167 -162866991 + L2 LINE L2 3231 3299 -14 862 182 0 0 chr3 55170167 55170335 -162866823 + FRAM SINE Alu 8 175 0 453 281 101 28 chr3 55171197 55171375 -162865783 + MIR SINE MIR 4 194 -68 219 292 99 30 chr3 55172730 55172914 -162864244 + MIR SINE MIR 7 210 -52 672 208 133 31 chr3 55173119 55173345 -162863813 - MIR SINE MIR 0 262 14 423 259 59 7 chr3 55173367 55173502 -162863656 - MIR3 SINE MIR -61 147 6 261 0 0 0 chr3 55175949 55175978 -162861180 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 867 117 0 7 chr3 55175982 55176119 -162861039 + MER41B LTR ERV1 494 629 -6 2210 107 28 3 chr3 55176125 55176452 -162860706 - L1PB1 LINE L1 -1 6150 5816 2265 64 17 3 chr3 55177295 55177591 -162859567 - AluY SINE Alu -11 300 1 1087 203 85 8 chr3 55177591 55177837 -162859321 - L1M1 LINE L1 -5453 2112 1848 2384 87 3 3 chr3 55178492 55178801 -162858357 - AluSg SINE Alu -1 309 1 371 205 90 0 chr3 55179238 55179316 -162857842 + MER5B DNA MER1_type 94 178 0 2321 103 3 0 chr3 55180306 55180607 -162856551 - AluSx SINE Alu -10 302 1 1005 159 13 70 chr3 55182184 55182411 -162854747 - MER20 DNA MER1_type 0 219 6 195 163 163 102 chr3 55183752 55183850 -162853308 - L2 LINE L2 0 3313 3210 947 159 0 19 chr3 55184494 55184651 -162852507 + FRAM SINE Alu 5 158 -18 200 258 54 43 chr3 55185806 55185899 -162851259 + MIR SINE MIR 54 147 -115 709 201 31 0 chr3 55185920 55186069 -162851089 + MSTC LTR MaLR 1 153 -243 327 25 0 0 chr3 55186640 55186680 -162850478 + (GA)n Simple_repeat Simple_repeat 2 41 0 261 289 0 13 chr3 55190705 55190781 -162846377 - Charlie4 DNA MER1_type -4 1957 1883 231 122 0 49 chr3 55191328 55191369 -162845789 + Alu SINE Alu 101 139 -163 2084 143 16 104 chr3 55191663 55191693 -162845465 - MSTD LTR MaLR 0 396 365 3686 105 2 12 chr3 55191693 55192209 -162844949 - MER9 LTR ERVK 0 511 1 2084 143 16 104 chr3 55192209 55192412 -162844746 - MSTD LTR MaLR -31 365 216 2385 92 3 0 chr3 55192412 55192707 -162844451 - AluSp SINE Alu -7 306 11 2084 143 16 104 chr3 55192707 55192906 -162844252 - MSTD LTR MaLR -180 216 1 12270 139 43 18 chr3 55193368 55196500 -162840658 - L1MA4 LINE L1 -4 6296 3072 4290 141 29 19 chr3 55198777 55199535 -162837623 + L1MA7 LINE L1 5522 6287 -4 2304 108 0 0 chr3 55199556 55199853 -162837305 + AluSx SINE Alu 1 297 -15 1367 103 8 23 chr3 55200187 55200401 -162836757 + pTR5 LTR ERV1 1629 2077 -361 720 269 87 11 chr3 55201143 55201567 -162835591 - LTR33 LTR ERVL -8 513 1 2211 117 3 10 chr3 55201601 55201908 -162835250 + AluSq SINE Alu 1 305 -8 634 244 29 12 chr3 55202123 55202295 -162834863 + L1ME3 LINE L1 5950 6124 -38 2051 122 14 0 chr3 55202615 55202903 -162834255 + AluSg SINE Alu 1 292 -18 389 225 0 0 chr3 55203686 55203757 -162833401 + MIR3 SINE MIR 115 185 -23 22 0 0 0 chr3 55205067 55205089 -162832069 + AT_rich Low_complexity Low_complexity 1 22 0 716 223 46 74 chr3 55205113 55205480 -162831678 + L1ME LINE L1 545 901 -5169 957 352 97 2 chr3 55205558 55206010 -162831148 - L2 LINE L2 -359 2955 2461 373 286 106 73 chr3 55206275 55206505 -162830653 - MLT1J LTR MaLR 0 511 261 889 152 15 8 chr3 55206505 55206637 -162830521 + FLAM_C SINE Alu 1 133 0 373 286 106 73 chr3 55206637 55206804 -162830354 - MLT1J LTR MaLR -250 261 101 362 270 80 18 chr3 55207687 55207850 -162829308 - MIR SINE MIR -55 207 35 320 311 117 0 chr3 55207896 55207999 -162829159 - L2 LINE L2 -21 3292 3178 1549 103 0 0 chr3 55210906 55211110 -162826048 - AluSg/x SINE Alu -8 302 99 350 274 80 0 chr3 55211764 55211877 -162825281 - MER104 DNA Tc2 -53 127 6 1761 133 20 47 chr3 55212003 55212303 -162824855 + AluJb SINE Alu 2 293 -19 2300 99 0 0 chr3 55213535 55213837 -162823321 - AluSg SINE Alu -8 302 1 259 293 75 60 chr3 55214810 55214943 -162822215 + MIR3 SINE MIR 38 172 -36 258 32 0 0 chr3 55215234 55215265 -162821893 + (A)n Simple_repeat Simple_repeat 1 31 0 370 286 54 64 chr3 55216195 55216398 -162820760 - LTR67 LTR ERVL -2 555 355 362 281 35 26 chr3 55216577 55216691 -162820467 + MIR SINE MIR 37 151 -57 2338 104 3 0 chr3 55217475 55217784 -162819374 - AluSx SINE Alu -2 310 1 25 31 0 0 chr3 55217876 55217908 -162819250 + AT_rich Low_complexity Low_complexity 1 32 0 1099 155 94 40 chr3 55218558 55218835 -162818323 - MER33 DNA MER1_type -32 292 1 278 276 0 13 chr3 55218895 55218971 -162818187 + Charlie4 DNA MER1_type 1883 1957 -4 494 230 44 7 chr3 55224286 55224421 -162812737 + MER103 DNA DNA 26 165 -1 3946 154 81 51 chr3 55224999 55226162 -162810996 - L1MB8 LINE L1 -31 6147 4934 373 306 47 29 chr3 55226236 55226511 -162810647 - L1ME4a LINE L1 -241 5880 5601 628 220 165 34 chr3 55227020 55227256 -162809902 - MLT1J LTR MaLR -243 268 2 229 286 0 0 chr3 55227309 55227365 -162809793 - HAL1 LINE L1 -179 2328 2273 2261 130 0 0 chr3 55227465 55227766 -162809392 + AluSx SINE Alu 1 301 -11 1120 185 0 39 chr3 55228015 55228220 -162808938 + AluJo SINE Alu 1 197 -115 38 39 0 0 chr3 55228238 55228290 -162808868 + AT_rich Low_complexity Low_complexity 1 52 0 683 222 0 22 chr3 55228583 55228718 -162808440 + FLAM_C SINE Alu 2 133 0 219 224 41 20 chr3 55228729 55228827 -162808331 + (TATAA)n Simple_repeat Simple_repeat 4 103 0 1379 246 62 49 chr3 55228832 55229360 -162807798 - HAL1 LINE L1 -342 2165 1631 180 0 0 0 chr3 55230938 55230958 -162806200 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 21 57 0 0 chr3 55231872 55231907 -162805251 + AT_rich Low_complexity Low_complexity 1 35 0 553 118 47 0 chr3 55232298 55232383 -162804775 + MLT1A2 LTR MaLR 1 89 -285 6426 105 17 38 chr3 55232484 55233488 -162803670 - L1P LINE L1 -4575 1571 589 406 261 30 64 chr3 55234213 55234416 -162802742 - LTR33 LTR ERVL -22 499 304 336 241 78 85 chr3 55234419 55234560 -162802598 + MER5C DNA MER1_type 21 160 -164 1127 148 22 0 chr3 55234570 55234752 -162802406 - AluSg/x SINE Alu -4 308 123 435 191 32 56 chr3 55234753 55234879 -162802279 + MER5C DNA MER1_type 198 320 -4 316 200 0 0 chr3 55235027 55235087 -162802071 - LTR33 LTR ERVL -431 90 31 457 177 282 0 chr3 55235581 55235705 -162801453 - MIR SINE MIR -25 237 79 857 237 109 5 chr3 55236277 55236488 -162800670 - MIR SINE MIR -29 233 1 2500 73 0 0 chr3 55237049 55237352 -162799806 + AluY SINE Alu 1 303 -8 885 147 237 0 chr3 55238181 55238358 -162798800 + MER20 DNA MER1_type 1 219 0 2245 119 3 0 chr3 55238763 55239066 -162798092 + AluSx SINE Alu 1 304 -8 186 231 0 0 chr3 55239881 55239920 -162797238 + MER5A DNA MER1_type 12 50 -139 713 182 17 72 chr3 55240002 55240183 -162796975 - MER5B DNA MER1_type -7 171 1 325 336 60 0 chr3 55240946 55241062 -162796096 + L2 LINE L2 3147 3269 -3 1380 153 121 16 chr3 55241449 55241698 -162795460 - ORSL DNA AcHobo 0 275 1 463 257 124 23 chr3 55242870 55243072 -162794086 + MIR SINE MIR 30 249 -13 251 238 0 129 chr3 55243344 55243403 -162793755 + MER5B DNA MER1_type 91 133 -45 2385 68 0 0 chr3 55243403 55243696 -162793462 - AluY SINE Alu -18 293 1 251 238 0 129 chr3 55243696 55243737 -162793421 + MER5B DNA MER1_type 133 178 0 522 300 68 32 chr3 55243759 55243979 -162793179 + MIR SINE MIR 8 235 -27 2249 113 0 0 chr3 55245083 55245375 -162791783 + AluSx SINE Alu 1 292 -20 747 250 94 0 chr3 55245548 55245740 -162791418 + MER63A DNA MER1_type 1 210 0 2324 97 0 3 chr3 55246157 55246456 -162790702 - AluSc SINE Alu -11 298 1 1108 285 37 23 chr3 55246703 55247138 -162790020 - LTR16B LTR ERVL -2 462 22 444 315 137 15 chr3 55247244 55247587 -162789571 + HAL1 LINE L1 2112 2496 -11 2279 117 0 0 chr3 55247923 55248230 -162788928 + AluSx SINE Alu 2 308 -4 23 54 0 0 chr3 55249264 55249301 -162787857 + AT_rich Low_complexity Low_complexity 1 37 0 1561 167 3 55 chr3 55249313 55249457 -162787701 + AluJo SINE Alu 5 126 -186 2227 118 0 6 chr3 55249457 55249770 -162787388 + AluSx SINE Alu 1 311 -1 1561 167 3 55 chr3 55249770 55249936 -162787222 + AluJo SINE Alu 126 299 -13 1964 87 0 4 chr3 55250320 55250572 -162786586 - AluSq SINE Alu -62 251 1 1330 253 67 52 chr3 55251635 55252214 -162784944 - L1ME3A LINE L1 -202 5951 5363 1505 89 10 0 chr3 55252214 55252416 -162784742 - L1MA2 LINE L1 0 6304 6101 1330 253 67 52 chr3 55252416 55252701 -162784457 - L1ME3A LINE L1 -790 5363 5084 1313 107 0 0 chr3 55252812 55252981 -162784177 - AluSq SINE Alu -144 169 1 1066 261 88 46 chr3 55252981 55253548 -162783610 - L1ME3A LINE L1 -5089 1030 440 602 265 123 16 chr3 55254239 55254562 -162782596 - L1ME4a LINE L1 -174 5947 5584 193 29 59 0 chr3 55255017 55255051 -162782107 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 2155 118 0 9 chr3 55255068 55255383 -162781775 + AluSx SINE Alu 1 312 0 605 199 0 82 chr3 55255456 55255602 -162781556 + FLAM_A SINE Alu 8 141 -1 1606 170 7 20 chr3 55255674 55255968 -162781190 + AluJo SINE Alu 1 290 -22 295 324 144 0 chr3 55256913 55257052 -162780106 + MIR3 SINE MIR 36 194 -14 739 169 0 31 chr3 55257391 55257521 -162779637 + FLAM_C SINE Alu 7 132 -11 1279 267 66 14 chr3 55257594 55258077 -162779081 + L1ME4a LINE L1 5517 6024 -97 348 157 0 34 chr3 55259101 55259190 -162777968 + CT-rich Low_complexity Low_complexity 2 87 0 1936 140 0 3 chr3 55260401 55260693 -162776465 + AluJo SINE Alu 1 291 -21 186 286 0 18 chr3 55260830 55260886 -162776272 - L2 LINE L2 -256 3057 3003 447 184 69 0 chr3 55261130 55261217 -162775941 + L2 LINE L2 3161 3253 -19 452 268 120 34 chr3 55261629 55261838 -162775320 + L1ME3A LINE L1 5932 6158 -12 1997 112 13 3 chr3 55262042 55262345 -162774813 - AluSx SINE Alu -6 306 1 225 273 64 27 chr3 55262772 55262882 -162774276 + L1MC/D LINE L1 5766 5879 -1929 444 125 0 0 chr3 55263141 55263205 -162773953 + AluS SINE Alu 2 65 -246 2315 94 0 0 chr3 55264194 55264501 -162772657 + AluSx SINE Alu 1 307 -5 472 252 103 45 chr3 55264853 55265008 -162772150 + MER91A DNA MER1_type 1 164 -32 26 0 0 0 chr3 55266180 55266206 -162770952 + AT_rich Low_complexity Low_complexity 1 26 0 342 351 36 12 chr3 55266722 55266890 -162770268 - MER5A DNA MER1_type -10 179 8 349 271 129 53 chr3 55267392 55267562 -162769596 + MER5A DNA MER1_type 1 183 -6 550 298 78 21 chr3 55268745 55268936 -162768222 - MIR3 SINE MIR -5 203 2 1155 97 0 7 chr3 55269513 55269668 -162767490 + AluSc SINE Alu 6 159 -150 2021 117 10 3 chr3 55269769 55270059 -162767099 - AluSx SINE Alu -20 292 1 482 215 76 82 chr3 55270576 55270734 -162766424 - MIR3 SINE MIR -26 182 26 879 195 67 5 chr3 55271017 55271134 -162766024 + AluJb SINE Alu 1 136 -176 2230 92 0 3 chr3 55271134 55271439 -162765719 + AluY SINE Alu 1 304 -7 879 195 67 5 chr3 55271439 55271516 -162765642 + AluJb SINE Alu 136 207 -105 239 128 0 43 chr3 55271518 55271565 -162765593 + Alu SINE Alu 88 132 -1 235 249 113 34 chr3 55271688 55271865 -162765293 + L1P5 LINE L1 5255 5445 -706 201 39 0 0 chr3 55271865 55271891 -162765267 + (TTTTTG)n Simple_repeat Simple_repeat 4 29 0 1878 149 10 0 chr3 55271937 55272233 -162764925 + AluJo SINE Alu 1 299 -13 560 253 58 5 chr3 55272370 55272560 -162764598 + L1ME4a LINE L1 5696 5895 -226 1840 132 3 32 chr3 55272560 55272870 -162764288 + AluSx SINE Alu 1 301 -11 789 145 0 38 chr3 55272882 55273013 -162764145 + FLAM_C SINE Alu 2 127 -6 23 0 0 0 chr3 55273013 55273036 -162764122 + AT_rich Low_complexity Low_complexity 1 23 0 384 267 60 9 chr3 55273502 55273618 -162763540 + MIR SINE MIR 83 204 -58 1259 189 92 36 chr3 55273641 55273922 -162763236 - AluJo SINE Alu -15 297 1 2122 226 79 28 chr3 55277212 55277453 -162759705 - MER90 LTR ERV1 0 614 387 2432 60 0 0 chr3 55277453 55277751 -162759407 + AluY SINE Alu 2 299 -12 2122 226 79 28 chr3 55277751 55278079 -162759079 - MER90 LTR ERV1 -227 387 16 1950 151 0 0 chr3 55278164 55278468 -162758690 + AluJo SINE Alu 1 304 -8 1230 192 78 20 chr3 55278548 55278892 -162758266 - L1ME1 LINE L1 -15 6151 5788 1485 117 9 5 chr3 55278983 55279206 -162757952 - AluSg/x SINE Alu -17 295 72 186 43 0 0 chr3 55279740 55279763 -162757395 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1995 104 10 7 chr3 55279803 55280091 -162757067 + AluSc SINE Alu 1 289 -20 379 280 171 0 chr3 55280118 55280293 -162756865 - L1ME1 LINE L1 -375 5746 5542 415 331 39 55 chr3 55280325 55280636 -162756522 - L1ME1 LINE L1 -1376 4770 4465 1766 159 0 29 chr3 55280932 55281246 -162755912 - AluJo SINE Alu -7 305 1 1294 145 31 0 chr3 55281267 55281495 -162755663 - L1MA7 LINE L1 -9 6282 6048 24 0 0 0 chr3 55281501 55281525 -162755633 + AT_rich Low_complexity Low_complexity 1 24 0 306 330 86 40 chr3 55281577 55282053 -162755105 - L1ME1 LINE L1 -1897 4249 3752 2145 111 0 0 chr3 55282206 55282504 -162754654 - AluSx SINE Alu -14 298 1 2365 59 13 0 chr3 55282704 55283007 -162754151 - AluY SINE Alu -4 307 1 389 175 0 0 chr3 55283522 55283585 -162753573 - L2 LINE L2 0 3313 3251 2008 107 19 23 chr3 55284636 55284946 -162752212 + AluSx SINE Alu 4 312 0 1790 194 110 42 chr3 55285031 55285306 -162751852 + L1MD2 LINE L1 5835 6090 -269 366 23 0 0 chr3 55285306 55285349 -162751809 + (CA)n Simple_repeat Simple_repeat 2 44 0 1790 194 110 42 chr3 55285349 55285553 -162751605 + L1MD2 LINE L1 6090 6347 -12 1724 149 51 3 chr3 55285671 55285966 -162751192 - AluJb SINE Alu -3 309 1 261 109 0 0 chr3 55286582 55286628 -162750530 + (TG)n Simple_repeat Simple_repeat 1 46 0 255 221 150 21 chr3 55288831 55288906 -162748252 - L1ME4a LINE L1 -2 6119 6055 2184 122 0 0 chr3 55288906 55289209 -162747949 + AluSx SINE Alu 1 303 -9 255 221 150 21 chr3 55289209 55289273 -162747885 - L1ME4a LINE L1 -66 6055 5962 327 237 82 126 chr3 55289387 55289549 -162747609 + L1ME4a LINE L1 5864 6011 -110 2060 86 46 4 chr3 55289549 55289829 -162747329 + AluSx SINE Alu 1 292 -20 327 237 82 126 chr3 55289829 55289936 -162747222 + L1ME4a LINE L1 6011 6121 0 561 30 0 0 chr3 55290297 55290364 -162746794 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 1633 141 16 0 chr3 55290364 55290620 -162746538 - AluJo SINE Alu -30 282 23 246 246 57 74 chr3 55292217 55292339 -162744819 - MIR SINE MIR -71 191 72 * 482 255 47 57 chr3 55292315 55292507 -162744651 - L2 LINE L2 -5 3308 3119 755 167 0 8 chr3 55292879 55292999 -162744159 - FLAM_C SINE Alu -16 127 9 2087 110 26 19 chr3 55293016 55293326 -162743832 - AluSx SINE Alu 0 312 1 408 310 9 0 chr3 55293908 55294021 -162743137 + MIR SINE MIR 101 214 -48 358 258 10 162 chr3 55294065 55294263 -162742895 - MIR SINE MIR -19 243 76 509 220 144 38 chr3 55294569 55294787 -162742371 + MIR SINE MIR 1 250 -12 646 224 8 0 chr3 55298638 55298763 -162738395 - MER5B DNA MER1_type -52 126 1 560 289 66 9 chr3 55299277 55299523 -162737635 - MIR SINE MIR 0 262 1 277 298 40 8 chr3 55299942 55300066 -162737092 + L1ME LINE L1 5737 5864 -257 1110 165 0 0 chr3 55300768 55300950 -162736208 - AluSg/x SINE Alu 0 310 129 297 200 17 0 chr3 55301567 55301627 -162735531 - MIR SINE MIR 0 262 202 205 163 23 0 chr3 55301639 55301682 -162735476 - MIR SINE MIR -163 99 56 834 242 93 64 chr3 55302878 55303287 -162733871 - MLT1J1 LTR MaLR -25 421 1 184 144 78 11 chr3 55303882 55303972 -162733186 + (CA)n Simple_repeat Simple_repeat 1 96 0 983 164 44 11 chr3 55304316 55304499 -162732659 - AluJb SINE Alu -16 296 108 493 300 56 22 chr3 55304543 55304745 -162732413 + MIR SINE MIR 35 240 -22 288 289 144 0 chr3 55304778 55304882 -162732276 - MIR SINE MIR -59 203 85 1330 157 10 0 chr3 55305201 55305405 -162731753 + AluJo SINE Alu 85 290 -22 725 241 159 69 chr3 55305914 55306304 -162730854 + L2 LINE L2 2888 3312 -1 508 228 159 21 chr3 55306371 55306516 -162730642 + MER5A DNA MER1_type 19 183 -6 204 229 84 12 chr3 55306700 55306783 -162730375 + L2 LINE L2 2910 2998 -274 2076 99 0 34 chr3 55306866 55307158 -162730000 - AluSq SINE Alu -31 282 1 1113 229 39 81 chr3 55308151 55308423 -162728735 + HsTC2 DNA Tc2 1286 1568 -330 2030 126 0 27 chr3 55308423 55308724 -162728434 + AluSx SINE Alu 3 295 -17 1113 229 39 81 chr3 55308724 55308909 -162728249 + HsTC2 DNA Tc2 1568 1900 2 338 301 45 60 chr3 55309212 55309411 -162727747 + MER91A DNA MER1_type 1 196 0 1022 240 43 0 chr3 55310388 55310596 -162726562 + MER58A DNA MER1_type 2 218 -6 244 281 123 41 chr3 55310602 55310773 -162726385 + MIR SINE MIR 20 204 -58 1565 287 62 31 chr3 55310792 55310897 -162726261 - L1MCc LINE L1 -4320 2802 2702 2560 66 3 0 chr3 55310897 55311198 -162725960 + AluY SINE Alu 3 304 -7 1565 287 62 31 chr3 55311198 55311970 -162725188 - L1MCc LINE L1 -4420 2702 1898 3316 182 15 36 chr3 55311981 55312665 -162724493 - L1MD2 LINE L1 -44 6315 5645 2256 137 55 29 chr3 55312665 55312758 -162724400 + MSTC LTR MaLR 1 90 -338 2452 92 0 0 chr3 55312758 55313062 -162724096 + AluSx SINE Alu 1 304 -8 2256 137 55 29 chr3 55313062 55313385 -162723773 + MSTC LTR MaLR 90 428 0 3316 182 15 36 chr3 55313385 55313431 -162723727 - L1MD2 LINE L1 -714 5645 5600 543 259 65 30 chr3 55313419 55313810 -162723348 - L1MCc LINE L1 -4892 1531 1264 * 264 261 75 67 chr3 55314179 55314313 -162722845 + L2 LINE L2 3138 3272 0 217 343 34 34 chr3 55315010 55315188 -162721970 - L2 LINE L2 -265 3007 2830 749 192 118 44 chr3 55315513 55315742 -162721416 - LTR48 LTR ERV1 0 787 542 748 265 27 12 chr3 55316238 55316628 -162720530 - LTR16B LTR ERVL 0 464 23 1381 98 23 9 chr3 55317805 55318005 -162719153 - L1PA14 LINE L1 -12 6149 5944 2599 41 0 0 chr3 55318005 55318298 -162718860 - AluY SINE Alu -18 293 1 1381 98 23 9 chr3 55318298 55318312 -162718846 - L1PA14 LINE L1 -217 5944 5932 1434 116 1 12 chr3 55318312 55318543 -162718615 - L1PA14 LINE L1 -106 6055 5830 354 223 354 23 chr3 55318591 55318851 -162718307 + L2 LINE L2 1870 2215 -1099 1066 148 27 84 chr3 55318877 55319051 -162718107 + LTR8 LTR ERV1 1 183 -508 1633 178 0 78 chr3 55319051 55319216 -162717942 - AluJo SINE Alu -16 296 120 2329 112 0 0 chr3 55319216 55319521 -162717637 - AluSx SINE Alu -7 305 1 2461 95 3 0 chr3 55319521 55319825 -162717333 - AluSx SINE Alu -7 305 1 1633 178 0 78 chr3 55319825 55319979 -162717179 - AluJo SINE Alu -190 122 1 1066 148 27 84 chr3 55319979 55320072 -162717086 + LTR8 LTR ERV1 183 231 -460 2378 104 0 0 chr3 55320079 55320378 -162716780 + AluY SINE Alu 1 299 -12 1920 182 72 38 chr3 55320412 55320856 -162716302 + LTR2B LTR ERV1 32 490 0 1710 214 19 79 chr3 55320857 55321338 -162715820 + LTR8 LTR ERV1 239 690 -1 293 332 55 55 chr3 55321377 55321651 -162715507 + L2 LINE L2 2358 2631 -683 287 183 21 118 chr3 55321661 55321754 -162715404 + MER21B LTR ERV1 1 84 -779 4099 148 44 3 chr3 55321756 55322438 -162714720 + MER50 LTR ERV1 1 710 -24 2267 199 55 42 chr3 55322493 55322816 -162714342 + MER21B LTR ERV1 98 434 -429 2120 130 33 25 chr3 55322816 55323177 -162713981 + THE1B LTR MaLR 1 364 0 2267 199 55 42 chr3 55323177 55323466 -162713692 + MER21B LTR ERV1 434 718 -145 5084 153 13 3 chr3 55323480 55324328 -162712830 + MER49 LTR ERV1 5 860 -63 1121 158 15 5 chr3 55324428 55324624 -162712534 + MER49 LTR ERV1 726 923 0 2148 133 0 3 chr3 55324704 55325004 -162712154 + AluSx SINE Alu 1 299 -13 226 329 14 0 chr3 55325044 55325114 -162712044 + L2 LINE L2 2659 2729 -585 295 232 33 99 chr3 55325989 55326140 -162711018 + MLT1K LTR MaLR 448 588 0 2149 118 3 10 chr3 55326200 55326505 -162710653 - AluSx SINE Alu -9 303 1 482 268 0 71 chr3 55326627 55326884 -162710274 + LTR8 LTR ERV1 89 304 -423 34 0 0 0 chr3 55326884 55326918 -162710240 + AT_rich Low_complexity Low_complexity 1 34 0 1005 204 0 69 chr3 55326918 55327096 -162710062 - AluJb SINE Alu -20 292 130 2247 122 10 0 chr3 55327096 55327400 -162709758 + AluSq SINE Alu 1 307 -6 1005 204 0 69 chr3 55327400 55327437 -162709721 - AluJb SINE Alu -182 130 92 1886 175 51 58 chr3 55327475 55327909 -162709249 + LTR8A LTR ERV1 297 727 0 222 267 119 0 chr3 55327911 55328012 -162709146 + MIR SINE MIR 102 214 -48 319 274 158 42 chr3 55328078 55328268 -162708890 + L1ME LINE L1 5576 5787 -334 1359 202 122 24 chr3 55328284 55328695 -162708463 - LTR48B LTR ERV1 0 644 194 1175 120 21 14 chr3 55328689 55328908 -162708250 + LTR23 LTR ERV1 186 438 -29 * 439 309 164 6 chr3 55328919 55329230 -162707928 - L1ME LINE L1 -377 5793 5434 282 361 62 16 chr3 55329326 55329520 -162707638 + MIR SINE MIR 20 222 -40 1631 185 28 25 chr3 55329660 55329985 -162707173 + MSTD LTR MaLR 71 396 0 2681 234 67 5 chr3 55330581 55331315 -162705843 + L1ME3A LINE L1 5392 6170 0 562 287 67 5 chr3 55331438 55331647 -162705511 + MIR SINE MIR 40 261 -1 198 0 0 0 chr3 55331660 55331682 -162705476 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 268 276 0 0 chr3 55331707 55331765 -162705393 - L2 LINE L2 -66 3206 3149 667 245 25 95 chr3 55331930 55332171 -162704987 + MIR SINE MIR 32 255 -7 553 325 85 16 chr3 55332323 55332628 -162704530 + L1MC4a LINE L1 5631 5956 -1852 1505 184 105 0 chr3 55333648 55333794 -162703364 - AluJo SINE Alu -18 294 165 270 0 0 0 chr3 55333794 55333824 -162703334 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1505 184 105 0 chr3 55333824 55333943 -162703215 - AluJo SINE Alu -147 165 1 216 67 0 0 chr3 55333977 55334007 -162703151 + (CA)n Simple_repeat Simple_repeat 2 31 0 2222 119 3 0 chr3 55334029 55334324 -162702834 - AluSx SINE Alu -16 296 1 2385 109 0 0 chr3 55334479 55334782 -162702376 - AluSq SINE Alu -10 303 1 650 267 198 10 chr3 55334883 55335186 -162701972 - L2 LINE L2 -4 3309 2950 1186 234 185 78 chr3 55335191 55335730 -162701428 + L2 LINE L2 1069 1549 -1765 2006 149 3 0 chr3 55335730 55336026 -162701132 - AluJb SINE Alu -15 297 1 1186 234 185 78 chr3 55336026 55336040 -162701118 + L2 LINE L2 1549 1560 -1754 180 0 0 0 chr3 55336040 55336060 -162701098 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 2004 123 39 7 chr3 55336067 55336352 -162700806 - AluSx SINE Alu -18 294 1 2384 102 0 0 chr3 55336354 55336648 -162700510 - AluSx SINE Alu -18 294 1 1186 234 185 78 chr3 55336648 55336774 -162700384 + L2 LINE L2 1565 1834 -1480 947 247 45 51 chr3 55336771 55337083 -162700075 + L2 LINE L2 3004 3313 0 * 367 254 158 17 chr3 55337101 55337278 -162699880 - L2 LINE L2 -409 2905 2704 1155 174 47 21 chr3 55337495 55337588 -162699570 + MLT1A1 LTR MaLR 1 90 -275 2432 92 0 3 chr3 55337588 55337893 -162699265 + AluSc SINE Alu 1 304 -5 1155 174 47 21 chr3 55337893 55338034 -162699124 + MLT1A1 LTR MaLR 90 241 -124 2457 130 103 82 chr3 55338066 55338445 -162698713 - MER4B LTR ERV1 -36 574 178 2265 131 0 3 chr3 55338445 55338757 -162698401 + AluSp SINE Alu 1 311 -2 2457 130 103 82 chr3 55338757 55338939 -162698219 - MER4B LTR ERV1 -432 178 1 806 165 0 0 chr3 55338939 55339065 -162698093 + MLT1A1 LTR MaLR 239 364 -1 415 143 0 0 chr3 55339450 55339527 -162697631 - AluJo SINE Alu -1 311 235 926 154 0 63 chr3 55339527 55339702 -162697456 - AluJo SINE Alu -148 164 1 8211 165 116 35 chr3 55339963 55341587 -162695571 - MER52A LTR ERV1 0 1755 1 326 280 85 25 chr3 55341847 55341965 -162695193 + L1ME4a LINE L1 5997 6121 0 456 273 207 0 chr3 55342010 55342160 -162694998 - MER5A DNA MER1_type 0 189 9 1851 123 83 117 chr3 55342167 55342518 -162694640 - Charlie3 DNA MER1_type 0 2712 1 38 51 0 0 chr3 55343842 55343901 -162693257 + GC_rich Low_complexity Low_complexity 1 59 0 21 36 0 0 chr3 55343964 55343992 -162693166 + GC_rich Low_complexity Low_complexity 1 28 0 360 0 0 0 chr3 55344576 55344616 -162692542 + (CA)n Simple_repeat Simple_repeat 2 41 0 231 61 0 0 chr3 55346536 55346569 -162690589 + (TG)n Simple_repeat Simple_repeat 2 34 0 2252 108 0 3 chr3 55346637 55346934 -162690224 - AluSc SINE Alu -13 296 1 725 159 23 0 chr3 55346938 55347070 -162690088 + MER5A DNA MER1_type 1 135 -54 968 166 151 35 chr3 55347728 55348028 -162689130 - AluJb SINE Alu 0 302 1 787 289 85 53 chr3 55348256 55348633 -162688525 - L2 LINE L2 0 3313 2925 569 308 17 34 chr3 55348639 55348873 -162688285 - MIR SINE MIR -32 230 1 22 0 0 0 chr3 55348897 55348919 -162688239 + AT_rich Low_complexity Low_complexity 1 22 0 1385 152 4 47 chr3 55348923 55349199 -162687959 - L1MB5 LINE L1 0 6174 5911 2229 134 0 0 chr3 55350557 55350862 -162686296 + AluJo SINE Alu 1 305 -7 1144 255 90 0 chr3 55350880 55351237 -162685921 - LTR16A LTR ERVL 0 450 62 444 298 68 26 chr3 55351341 55351532 -162685626 - MIR SINE MIR 0 262 64 227 125 25 0 chr3 55351606 55351646 -162685512 + LTR33 LTR ERVL 6 46 -475 2474 62 0 20 chr3 55351719 55352023 -162685135 - AluY SINE Alu -13 298 1 2416 79 0 13 chr3 55352611 55352916 -162684242 - AluSx SINE Alu -11 301 1 704 167 9 0 chr3 55353462 55353576 -162683582 - AluJb SINE Alu -196 116 2 520 248 52 7 chr3 55353666 55353819 -162683339 - L1ME3A LINE L1 -67 6103 5944 288 330 25 25 chr3 55354796 55354914 -162682244 + MIR3 SINE MIR 3 120 -88 323 252 70 26 chr3 55355139 55355254 -162681904 - L1ME4a LINE L1 -5 6116 5997 544 228 153 57 chr3 55355840 55356068 -162681090 - MIR SINE MIR -7 255 6 2037 127 3 0 chr3 55356561 55356869 -162680289 - AluSx SINE Alu -3 309 1 2251 99 3 0 chr3 55358336 55358639 -162678519 + AluSx SINE Alu 2 305 -7 217 234 0 0 chr3 55358703 55358750 -162678408 + L2 LINE L2 3267 3313 0 751 161 9 0 chr3 55359172 55359284 -162677874 - FAM SINE Alu -72 113 1 302 221 15 29 chr3 55359465 55359533 -162677625 - L2 LINE L2 0 3313 3247 532 263 23 0 chr3 55359556 55359689 -162677469 + L2 LINE L2 3172 3307 -6 2122 88 28 0 chr3 55359689 55359972 -162677186 + AluSg SINE Alu 1 291 -19 478 185 173 93 chr3 55360413 55360535 -162676623 + MIR SINE MIR 60 200 -62 1068 199 107 7 chr3 55360535 55360826 -162676332 + MER33 DNA MER1_type 5 324 0 478 185 173 93 chr3 55360826 55360865 -162676293 + MIR SINE MIR 200 234 -28 324 0 0 0 chr3 55361850 55361886 -162675272 + (TC)n Simple_repeat Simple_repeat 2 37 0 1595 176 7 0 chr3 55361890 55362169 -162674989 - AluJo SINE Alu -31 281 1 324 230 283 0 chr3 55362219 55362332 -162674826 - MLT1G LTR MaLR -438 152 8 1012 173 97 18 chr3 55362337 55362563 -162674595 - L1ME2 LINE L1 -20 6144 5901 3522 191 8 2 chr3 55362567 55363168 -162673990 - MER82 DNA MER2_type 0 653 49 664 190 31 89 chr3 55363177 55363435 -162673723 - L1ME2 LINE L1 -243 5921 5679 843 174 0 0 chr3 55363441 55363579 -162673579 - FLAM_C SINE Alu 0 143 6 986 168 18 0 chr3 55363585 55363752 -162673406 - L1ME2 LINE L1 -479 5687 5518 1243 86 0 0 chr3 55364032 55364195 -162672963 + AluY SINE Alu 1 163 -148 1847 153 3 19 chr3 55364227 55364541 -162672617 + AluJb SINE Alu 3 311 -1 250 191 157 78 chr3 55364562 55364677 -162672481 - L1ME4a LINE L1 0 6121 5998 1026 237 158 6 chr3 55364792 55365134 -162672024 - MER34 LTR ERV1 0 542 149 772 132 8 0 chr3 55365146 55365275 -162671883 - L1PB4 LINE L1 -3 6153 6024 1297 192 15 11 chr3 55365284 55365555 -162671603 + AluJb SINE Alu 25 296 -16 361 165 0 59 chr3 55365555 55365640 -162671518 - L1PB4 LINE L1 -124 6032 5953 587 174 145 22 chr3 55365640 55365778 -162671380 - MER34 LTR ERV1 -375 167 13 335 262 7 97 chr3 55366191 55366336 -162670822 + L2 LINE L2 2677 2808 -506 1958 94 73 0 chr3 55366545 55366820 -162670338 - AluSg SINE Alu -15 295 1 2101 94 0 42 chr3 55366822 55367129 -162670029 - AluSx SINE Alu -13 299 6 275 308 119 31 chr3 55367299 55367458 -162669700 - MIR SINE MIR -28 234 62 225 265 0 0 chr3 55368066 55368115 -162669043 - L2 LINE L2 -1 3312 3264 341 226 199 27 chr3 55368403 55368549 -162668609 - MIR SINE MIR -6 256 86 443 225 62 8 chr3 55368694 55368823 -162668335 + L1ME3A LINE L1 6027 6162 -8 839 164 16 0 chr3 55368968 55369096 -162668062 - FLAM_C SINE Alu -2 131 2 549 104 224 8 chr3 55369124 55369258 -162667900 + MER53 DNA DNA 2 164 -25 2119 111 3 0 chr3 55369305 55369593 -162667565 + AluSq SINE Alu 1 289 -24 290 77 0 0 chr3 55369636 55369675 -162667483 + MER53 DNA DNA 151 189 0 1032 163 108 30 chr3 55370009 55370294 -162666864 + L1MC4a LINE L1 6862 7140 -668 745 145 0 3 chr3 55370294 55370536 -162666622 + AluSx SINE Alu 1 301 -11 1901 193 61 34 chr3 55370536 55370981 -162666177 + L1MC4 LINE L1 7211 7667 -375 195 42 0 0 chr3 55370982 55371006 -162666152 + (TCCCC)n Simple_repeat Simple_repeat 4 27 0 1589 163 16 44 chr3 55371008 55371328 -162665830 - AluJo SINE Alu -1 311 1 918 200 15 68 chr3 55371495 55371571 -162665587 - L1MB7 LINE L1 0 6184 6106 2134 111 0 0 chr3 55371571 55371869 -162665289 + AluSc SINE Alu 1 298 -11 918 200 15 68 chr3 55371869 55372057 -162665101 - L1MB7 LINE L1 -78 6106 5934 1617 162 46 37 chr3 55372102 55372429 -162664729 - MER44D DNA MER2_type 0 609 10 2154 104 3 0 chr3 55372457 55372756 -162664402 - AluSx SINE Alu -12 300 1 578 243 50 21 chr3 55372756 55372986 -162664172 - L1MB7 LINE L1 -516 5605 5359 245 196 0 0 chr3 55373572 55373618 -162663540 + MER5B DNA MER1_type 3 48 -130 2159 47 3 57 chr3 55374214 55374537 -162662621 + AluY SINE Alu 1 307 0 1807 169 110 14 chr3 55375329 55375685 -162661473 + MSTD LTR MaLR 7 396 0 4714 139 19 0 chr3 55375943 55376693 -162660465 + L1MC1 LINE L1 5557 6320 -13 323 248 184 14 chr3 55377147 55377288 -162659870 + MIR SINE MIR 86 250 -12 800 154 0 0 chr3 55377297 55377414 -162659744 + FLAM_C SINE Alu 1 117 -16 1250 196 56 18 chr3 55377449 55377514 -162659644 + L1ME1 LINE L1 53 114 -6282 2278 95 0 0 chr3 55377514 55377818 -162659340 + AluSx SINE Alu 1 304 -8 1250 196 56 18 chr3 55377818 55378038 -162659120 + L1ME1 LINE L1 114 349 -6047 3201 212 55 40 chr3 55378044 55378916 -162658242 + L1ME1 LINE L1 5290 6169 -66 2281 87 3 7 chr3 55378920 55379229 -162657929 + AluSg SINE Alu 1 308 -2 1367 144 42 128 chr3 55379246 55379599 -162657559 + LTR1 LTR ERV1 1 323 -462 823 70 0 0 chr3 55379597 55379697 -162657461 + LTR1 LTR ERV1 682 781 -4 * 264 242 1 0 chr3 55379703 55379777 -162657381 + L1MA10 LINE L1 6110 6327 0 2088 98 3 10 chr3 55380710 55381029 -162656129 + AluSx SINE Alu 1 312 0 385 70 35 0 chr3 55381052 55381109 -162656049 + AluSc SINE Alu 241 299 0 191 391 46 11 chr3 55382440 55382527 -162654631 - L2 LINE L2 -86 3186 3097 473 182 77 49 chr3 55383052 55383195 -162653963 + L1ME2 LINE L1 6004 6150 -14 243 294 130 11 chr3 55383251 55383435 -162653723 + L1MC4 LINE L1 7836 8041 -1 233 242 121 30 chr3 55383957 55384056 -162653102 - L1ME4a LINE L1 -49 6072 5965 381 299 161 0 chr3 55384336 55384510 -162652648 - MIR SINE MIR -14 248 47 2159 103 0 0 chr3 55384744 55385034 -162652124 + AluSx SINE Alu 1 290 -22 341 137 0 0 chr3 55385059 55385110 -162652048 - FLAM SINE Alu -24 109 59 995 97 0 8 chr3 55385404 55385538 -162651620 + FLAM_C SINE Alu 1 133 0 316 157 0 0 chr3 55386889 55386940 -162650218 + MER5B DNA MER1_type 3 53 -125 2296 74 0 3 chr3 55387071 55387367 -162649791 - AluSc SINE Alu -14 295 1 1092 201 112 51 chr3 55387683 55388057 -162649101 + LTR37A LTR ERV1 1 397 -29 632 212 45 0 chr3 55388092 55388224 -162648934 - L1PA16 LINE L1 -9 6157 6020 2904 95 78 17 chr3 55388249 55388673 -162648485 - L1PA16 LINE L1 -315 5851 5395 1412 198 31 7 chr3 55388673 55388961 -162648197 - AluJo SINE Alu -17 295 1 2904 95 78 17 chr3 55388961 55388998 -162648160 - L1PA16 LINE L1 -771 5395 5362 1877 134 99 38 chr3 55389171 55389455 -162647703 - MLT1A1 LTR MaLR -1 364 54 2306 90 0 0 chr3 55389455 55389754 -162647404 - AluSp SINE Alu -14 299 1 1877 134 99 38 chr3 55389754 55389812 -162647346 - MLT1A1 LTR MaLR -311 54 1 261 256 101 54 chr3 55389990 55390158 -162647000 + L2 LINE L2 2886 3061 -211 2101 121 3 6 chr3 55390208 55390521 -162646637 - AluSx SINE Alu 0 312 1 317 266 143 7 chr3 55390901 55391055 -162646103 - MIR3 SINE MIR -10 198 24 207 220 33 22 chr3 55391281 55391372 -162645786 + (TA)n Simple_repeat Simple_repeat 1 92 0 1892 195 182 4 chr3 55391441 55391897 -162645261 - REP3 LTR ERV -25 537 1 2015 139 0 3 chr3 55391965 55392268 -162644890 - AluJo SINE Alu -10 302 1 314 299 73 36 chr3 55392303 55392440 -162644718 - L1ME4a LINE L1 -119 6002 5861 1975 144 3 0 chr3 55392995 55393293 -162643865 + AluSx SINE Alu 1 299 -13 325 360 33 0 chr3 55394360 55394510 -162642648 - MIR SINE MIR -105 157 3 216 209 23 0 chr3 55395614 55395657 -162641501 + CT-rich Low_complexity Low_complexity 2 45 0 643 74 0 0 chr3 55395758 55395839 -162641319 + AluJ/FRAM SINE Alu 221 301 -11 237 191 85 0 chr3 55395853 55395900 -162641258 + MER3 DNA MER1_type 39 89 -120 860 173 0 58 chr3 55396283 55396456 -162640702 + MER3 DNA MER1_type 43 205 -4 1305 164 109 22 chr3 55396481 55396755 -162640403 - AluJb SINE Alu -14 298 1 267 264 99 25 chr3 55396951 55397072 -162640086 - L1ME4a LINE L1 -200 5921 5792 206 297 123 84 chr3 55397684 55397994 -162639164 + L2 LINE L2 2950 3271 -1 3750 182 61 2 chr3 55398011 55398964 -162638194 - L1MB7 LINE L1 -153 6031 5014 579 254 33 25 chr3 55398944 55399184 -162637974 - L1MEc LINE L1 -4540 1856 1615 * 2316 71 0 0 chr3 55399187 55399481 -162637677 + AluY SINE Alu 1 294 -17 347 130 13 0 chr3 55399482 55399559 -162637599 + (TA)n Simple_repeat Simple_repeat 1 78 0 2204 239 124 68 chr3 55399563 55400128 -162637030 - L1MEc LINE L1 -4763 1633 1101 7092 53 14 0 chr3 55400128 55401426 -162635732 - L1PA6 LINE L1 -4 6150 4846 2059 114 3 3 chr3 55401427 55401717 -162635441 - AluSx SINE Alu -19 293 4 1920 138 0 0 chr3 55401724 55402014 -162635144 - AluSx SINE Alu -22 290 1 2204 239 124 68 chr3 55402014 55402649 -162634509 - L1MEc LINE L1 -5300 1096 355 598 195 176 33 chr3 55402789 55402999 -162634159 + MER5C DNA MER1_type 80 319 -5 2043 139 7 0 chr3 55403415 55403725 -162633433 + AluSx SINE Alu 1 312 0 517 208 173 40 chr3 55403774 55403947 -162633211 + MER3 DNA MER1_type 14 209 0 1660 119 75 18 chr3 55404345 55404623 -162632535 + AluJb SINE Alu 11 304 -8 2193 110 0 0 chr3 55404776 55405075 -162632083 - AluSx SINE Alu -13 299 1 906 152 134 6 chr3 55405404 55405568 -162631590 + MER5A DNA MER1_type 3 187 -2 1782 187 14 25 chr3 55405773 55406136 -162631022 + MLT1A1 LTR MaLR 7 365 0 340 271 90 38 chr3 55406184 55406317 -162630841 + MIR SINE MIR 1 140 -122 2395 93 0 0 chr3 55406365 55406671 -162630487 - AluSc SINE Alu -9 300 1 1069 172 6 0 chr3 55407235 55407409 -162629749 + FRAM SINE Alu 1 175 -1 196 279 295 16 chr3 55407502 55407631 -162629527 + MIR SINE MIR 6 170 -92 2310 107 3 16 chr3 55408392 55408709 -162628449 - AluSp SINE Alu 0 313 1 1396 182 95 8 chr3 55409176 55409440 -162627718 + AluJb SINE Alu 3 289 -23 278 279 290 11 chr3 55409483 55409755 -162627403 - L1ME LINE L1 -253 5868 5521 2195 133 0 0 chr3 55410260 55410569 -162626589 - AluSx SINE Alu -3 309 1 339 228 173 43 chr3 55411063 55411387 -162625771 - L1ME4a LINE L1 -66 6055 5690 229 326 120 25 chr3 55411391 55411604 -162625554 - L1ME4a LINE L1 -2158 5650 5459 1619 186 7 16 chr3 55411604 55411910 -162625248 - AluJo SINE Alu -8 304 2 229 326 120 25 chr3 55411910 55412055 -162625103 - L1ME4a LINE L1 -2349 5459 5258 225 0 0 0 chr3 55412132 55412157 -162625001 + (TG)n Simple_repeat Simple_repeat 1 25 0 22 56 0 0 chr3 55412253 55412289 -162624869 + AT_rich Low_complexity Low_complexity 1 36 0 2276 81 46 0 chr3 55412571 55412856 -162624302 + AluSx SINE Alu 1 298 -14 705 288 64 90 chr3 55412971 55413570 -162623588 - L1ME3A LINE L1 -326 5844 5262 1508 151 121 15 chr3 55413587 55413725 -162623433 - AluSx SINE Alu -8 304 182 2347 103 0 0 chr3 55413725 55414027 -162623131 - AluSx SINE Alu -10 302 1 1508 151 121 15 chr3 55414027 55414160 -162622998 - AluSx SINE Alu -130 182 4 213 336 92 15 chr3 55416552 55416683 -162620475 + L2 LINE L2 3123 3263 -9 539 302 79 39 chr3 55416878 55417285 -162619873 - MLT1K LTR MaLR -151 437 15 353 276 59 33 chr3 55417548 55417700 -162619458 + MIR SINE MIR 33 188 -74 775 187 87 0 chr3 55417709 55417859 -162619299 - MER5A DNA MER1_type -26 163 1 2335 91 0 13 chr3 55418325 55418623 -162618535 + AluSg SINE Alu 1 294 -16 2395 194 34 8 chr3 55419279 55419785 -162617373 - L1ME3 LINE L1 -2 6160 5642 1073 249 116 57 chr3 55420170 55420611 -162616547 - MLT1H LTR MaLR 0 549 83 606 259 104 44 chr3 55421429 55421491 -162615667 - MLT1L LTR MaLR -3 612 555 947 206 43 16 chr3 55421491 55421675 -162615483 - MER5A DNA MER1_type 0 189 1 606 259 104 44 chr3 55421675 55421863 -162615295 - MLT1L LTR MaLR -60 555 347 1577 155 108 7 chr3 55423486 55423763 -162613395 + AluJo SINE Alu 1 305 -7 434 129 86 129 chr3 55425076 55425102 -162612056 - MER33 DNA MER1_type -2261 363 337 2274 108 3 0 chr3 55425102 55425397 -162611761 + AluSx SINE Alu 1 296 -16 434 129 86 129 chr3 55425397 55425509 -162611649 - MER33 DNA MER1_type -2287 337 231 353 163 63 2 chr3 55425509 55425750 -162611408 + AluJo SINE Alu 1 296 -6 2074 102 46 0 chr3 55425754 55426038 -162611120 + AluSx SINE Alu 2 298 -14 415 114 129 171 chr3 55426041 55426111 -162611047 - MER33 DNA MER1_type -2395 190 119 2091 82 32 38 chr3 55426111 55426427 -162610731 - L1PA8A LINE L1 -4 6127 5814 415 114 129 171 chr3 55426427 55426549 -162610609 - MER33 DNA MER1_type -2466 119 6 1870 140 3 14 chr3 55430087 55430397 -162606761 - AluJb SINE Alu 0 308 2 2304 110 3 0 chr3 55430513 55430821 -162606337 + AluSx SINE Alu 3 311 -1 1887 199 53 21 chr3 55431156 55431593 -162605565 - LTR40b LTR ERVL -9 453 3 610 233 67 20 chr3 55432076 55432226 -162604932 + MER63 DNA MER1_type 3 785 -277 229 217 271 23 chr3 55432381 55432510 -162604648 - MIR SINE MIR -100 162 2 970 180 121 37 chr3 55432620 55433033 -162604125 - MLT1D LTR MaLR 0 505 23 4369 82 30 31 chr3 55433033 55433667 -162603491 + MER51A LTR ERV1 2 634 0 970 180 121 37 chr3 55433667 55433693 -162603465 - MLT1D LTR MaLR -482 23 1 1989 212 66 51 chr3 55434192 55434795 -162602363 - LTR9 LTR ERV1 0 612 1 307 221 106 68 chr3 55435465 55435603 -162601555 + MIR SINE MIR 25 172 -90 4626 32 9 4 chr3 55435603 55436158 -162601000 + LTR6B LTR ERV1 1 558 0 307 221 106 68 chr3 55436158 55436182 -162600976 + MIR SINE MIR 172 194 -68 2076 141 0 3 chr3 55436287 55436585 -162600573 - AluSx SINE Alu -15 297 1 363 210 97 124 chr3 55436779 55436965 -162600193 + L1ME LINE L1 5483 5663 -458 2184 95 7 3 chr3 55436967 55437251 -162599907 + AluY SINE Alu 1 285 -26 1346 139 0 54 chr3 55437266 55437489 -162599669 - AluJo SINE Alu -33 279 69 29 28 0 0 chr3 55437780 55437816 -162599342 + AT_rich Low_complexity Low_complexity 1 36 0 652 27 0 0 chr3 55438615 55438689 -162598469 - tRNA-Arg-CGC tRNA tRNA -2 74 1 24 0 0 0 chr3 55439030 55439054 -162598104 + GC_rich Low_complexity Low_complexity 1 24 0 994 168 0 18 chr3 55441315 55441482 -162595676 - FRAM SINE Alu 0 166 3 289 311 65 31 chr3 55441846 55442020 -162595138 + MIR SINE MIR 10 192 -56 1534 188 51 0 chr3 55442022 55442315 -162594843 - AluJb SINE Alu -4 308 1 407 301 7 14 chr3 55443850 55443996 -162593162 + MER5A DNA MER1_type 32 176 -13 2229 118 0 0 chr3 55444518 55444815 -162592343 - AluSx SINE Alu -15 297 1 4145 119 38 46 chr3 55444908 55445247 -162591911 - L1MB3 LINE L1 -2 6181 5841 2064 135 0 0 chr3 55445247 55445551 -162591607 - AluY SINE Alu -7 304 1 4145 119 38 46 chr3 55445551 55445956 -162591202 - L1MB3 LINE L1 -342 5841 5443 22 56 0 0 chr3 55446101 55446137 -162591021 + AT_rich Low_complexity Low_complexity 1 36 0 738 158 28 10 chr3 55446263 55446402 -162590756 + L1M3 LINE L1 5606 5748 -416 487 143 26 0 chr3 55446430 55446507 -162590651 - FLAM SINE Alu -17 126 48 2010 143 0 7 chr3 55446519 55446819 -162590339 - AluJb SINE Alu 0 312 15 1821 82 0 17 chr3 55447798 55448030 -162589128 - AluSq SINE Alu -20 293 66 1973 92 11 32 chr3 55448030 55448311 -162588847 - AluSc SINE Alu -33 276 1 734 0 0 0 chr3 55448443 55448551 -162588607 + L1PA2 LINE L1 6063 6170 0 23 0 0 0 chr3 55448566 55448589 -162588569 + AT_rich Low_complexity Low_complexity 1 23 0 50 42 0 0 chr3 55448665 55448736 -162588422 + AT_rich Low_complexity Low_complexity 1 71 0 2025 131 21 0 chr3 55448779 55449062 -162588096 - AluSx SINE Alu -23 289 1 2041 130 3 40 chr3 55449888 55450212 -162586946 - AluSx SINE Alu 0 312 1 570 249 14 36 chr3 55450833 55451019 -162586139 - L1MA10 LINE L1 0 6334 5990 1058 195 34 30 chr3 55451029 55451265 -162585893 + L1ME1 LINE L1 5593 5829 -337 487 274 45 0 chr3 55452200 55452357 -162584801 - MIR SINE MIR -24 238 75 23 33 0 0 chr3 55453013 55453043 -162584115 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr3 55453197 55453225 -162583933 + AT_rich Low_complexity Low_complexity 1 28 0 2435 89 0 3 chr3 55454737 55455040 -162582118 - AluSq SINE Alu -7 306 5 192 205 205 51 chr3 55455213 55455291 -162581867 - L2 LINE L2 -43 3229 3140 599 205 34 0 chr3 55456585 55456702 -162580456 + Tigger6a DNA MER2_type 1 121 -962 2592 174 49 13 chr3 55456704 55457239 -162579919 + Tigger6a DNA MER2_type 369 922 -161 566 184 65 65 chr3 55457299 55457467 -162579691 + Tigger6a DNA MER2_type 916 1083 0 21 0 0 0 chr3 55457736 55457757 -162579401 + AT_rich Low_complexity Low_complexity 1 21 0 187 200 231 15 chr3 55458359 55458424 -162578734 + MIR SINE MIR 159 237 -25 219 305 51 0 chr3 55458543 55458602 -162578556 - L2 LINE L2 -20 3252 3191 1999 141 26 7 chr3 55459427 55459733 -162577425 - AluSx SINE Alu 0 312 1 24 0 0 0 chr3 55459741 55459765 -162577393 + AT_rich Low_complexity Low_complexity 1 24 0 482 175 0 0 chr3 55459921 55460001 -162577157 + MER116 DNA Mariner 1 80 0 316 280 75 108 chr3 55460162 55460533 -162576625 - L2 LINE L2 -1 3271 2913 1513 181 43 4 chr3 55460585 55460866 -162576292 + AluJo SINE Alu 1 292 -20 1881 149 37 7 chr3 55461481 55461776 -162575382 - AluSx SINE Alu -8 304 1 360 308 207 23 chr3 55461837 55462315 -162574843 - L2 LINE L2 -460 2854 2289 21 0 0 0 chr3 55462346 55462367 -162574791 + AT_rich Low_complexity Low_complexity 1 21 0 30 69 0 0 chr3 55463217 55463275 -162573883 + AT_rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr3 55463359 55463380 -162573778 + AT_rich Low_complexity Low_complexity 1 21 0 925 123 0 0 chr3 55463690 55463820 -162573338 + FRAM SINE Alu 1 130 -46 2365 124 51 0 chr3 55464112 55464443 -162572715 + MER7A DNA MER2_type 1 346 0 2310 98 0 0 chr3 55464734 55465029 -162572129 + AluSg SINE Alu 1 295 -15 376 291 60 8 chr3 55465298 55465432 -162571726 - L2 LINE L2 -419 2895 2755 1562 189 25 7 chr3 55465432 55465713 -162571445 + AluJo SINE Alu 1 286 -26 286 286 217 22 chr3 55465718 55466040 -162571118 - L2 LINE L2 -1667 1647 1263 265 224 149 30 chr3 55466043 55466177 -162570981 + L1ME4a LINE L1 5969 6118 -3 933 181 0 18 chr3 55466999 55467165 -162569993 + AluJo SINE Alu 127 289 -23 22 0 0 0 chr3 55467168 55467190 -162569968 + AT_rich Low_complexity Low_complexity 1 22 0 578 253 23 9 chr3 55467324 55467505 -162569653 + L1MC2 LINE L1 5683 5813 -357 564 195 101 41 chr3 55467718 55467887 -162569271 - L1MB4 LINE L1 -1 6179 6001 41 0 0 0 chr3 55470862 55470903 -162566255 + AT_rich Low_complexity Low_complexity 1 41 0 9359 212 74 46 chr3 55471063 55471421 -162565737 - L1MB4 LINE L1 -24 6654 6308 285 75 0 0 chr3 55471421 55471461 -162565697 + (CA)n Simple_repeat Simple_repeat 1 40 0 9359 212 74 46 chr3 55471461 55471769 -162565389 - L1MB4 LINE L1 -370 6308 6010 324 0 0 0 chr3 55471769 55471805 -162565353 + (TG)n Simple_repeat Simple_repeat 2 37 0 9359 212 74 46 chr3 55471805 55474245 -162562913 - L1MB4 LINE L1 -668 6010 3640 2962 9 0 0 chr3 55474245 55474563 -162562595 - AluYb8 SINE Alu 0 318 1 9359 212 74 46 chr3 55474563 55474984 -162562174 - L1MB4 LINE L1 -3038 3640 3232 2022 87 80 10 chr3 55474984 55475273 -162561885 - AluY SINE Alu -2 309 1 9359 212 74 46 chr3 55475273 55476058 -162561100 - L1MB4 LINE L1 -3446 3232 2471 1745 191 0 3 chr3 55476058 55476352 -162560806 - AluJo SINE Alu -19 293 1 9359 212 74 46 chr3 55476352 55476452 -162560706 - L1MB4 LINE L1 -4207 2471 2375 2192 109 7 0 chr3 55476452 55476763 -162560395 - AluSx SINE Alu 0 313 1 9359 212 74 46 chr3 55476763 55478186 -162558972 - L1MB4 LINE L1 -4303 2375 496 292 330 55 33 chr3 55478404 55478586 -162558572 - L1MB4 LINE L1 -6314 228 43 229 235 0 73 chr3 55478563 55478631 -162558527 - L1M3c LINE L1 -6078 63 1 * 214 218 0 18 chr3 55479166 55479221 -162557937 + (TA)n Simple_repeat Simple_repeat 2 55 0 388 301 102 54 chr3 55479772 55480107 -162557051 - L1ME4a LINE L1 -170 5951 5601 275 372 39 23 chr3 55480652 55480781 -162556377 + MIR SINE MIR 16 146 -62 456 312 97 69 chr3 55481053 55481300 -162555858 - MIR SINE MIR -3 259 6 25 23 0 23 chr3 55481490 55481509 -162555649 + AT_rich Low_complexity Low_complexity 1 19 -23 2190 134 0 0 chr3 55481509 55481816 -162555342 + AluSx SINE Alu 1 307 -5 25 23 0 23 chr3 55481816 55481839 -162555319 + AT_rich Low_complexity Low_complexity 19 42 0 1557 169 49 14 chr3 55481839 55482123 -162555035 - AluJo SINE Alu -18 294 1 249 239 99 0 chr3 55482157 55482228 -162554930 - MER5B DNA MER1_type -74 104 27 386 314 103 2 chr3 55483013 55483243 -162553915 - L1MC/D LINE L1 -374 5747 5466 1848 161 3 10 chr3 55483243 55483547 -162553611 - AluJb SINE Alu -10 302 1 386 314 103 2 chr3 55483547 55483626 -162553532 - L1MC/D LINE L1 -655 5466 5396 361 312 5 111 chr3 55485255 55485454 -162551704 + MER5B DNA MER1_type 1 178 0 268 200 100 0 chr3 55485499 55485559 -162551599 - MER5A DNA MER1_type -110 79 14 357 173 280 34 chr3 55487244 55487257 -162549901 - L1ME4a LINE L1 -3 6118 6109 1631 153 89 151 chr3 55487257 55487965 -162549193 - MER4A LTR ERV1 0 664 1 357 173 280 34 chr3 55487965 55488230 -162548928 - L1ME4a LINE L1 -12 6109 5764 332 379 110 0 chr3 55488783 55488928 -162548230 + L2 LINE L2 3110 3270 -2 565 205 192 0 chr3 55489101 55489257 -162547901 - MER58C DNA MER1_type -5 210 25 2089 145 10 0 chr3 55490053 55490357 -162546801 + 7SLRNA srpRNA srpRNA 1 307 -13 592 182 273 45 chr3 55490611 55490765 -162546393 + MER5A DNA MER1_type 1 189 0 1679 133 97 56 chr3 55492862 55493222 -162543936 + THE1C LTR MaLR 1 375 0 326 188 12 34 chr3 55493545 55493659 -162543499 + MER52A LTR ERV1 1 91 -1187 310 281 42 73 chr3 55494327 55494423 -162542735 + L1MDa LINE L1 385 477 -6063 6722 178 49 14 chr3 55494519 55495788 -162541370 + MER52A LTR ERV1 443 1755 0 294 87 0 0 chr3 55495964 55496010 -162541148 + (TA)n Simple_repeat Simple_repeat 2 47 0 41 0 0 0 chr3 55496021 55496062 -162541096 + AT_rich Low_complexity Low_complexity 1 41 0 1571 215 139 61 chr3 55496245 55496449 -162540709 - MLT1E LTR MaLR -11 582 395 2041 111 100 60 chr3 55496449 55496799 -162540359 - THE1B LTR MaLR 0 364 1 1571 215 139 61 chr3 55496799 55496964 -162540194 - MLT1E LTR MaLR -198 395 244 2396 86 0 0 chr3 55496964 55497266 -162539892 - AluSq SINE Alu -11 302 1 1571 215 139 61 chr3 55497266 55497435 -162539723 - MLT1E LTR MaLR -349 244 1 239 195 0 0 chr3 55497532 55497573 -162539585 - MLT1H1 LTR MaLR 0 555 515 557 245 121 81 chr3 55498004 55498143 -162539015 - L1ME3 LINE L1 -211 5951 5819 2133 101 11 0 chr3 55498143 55498448 -162538710 - AluSx SINE Alu 0 308 1 557 245 121 81 chr3 55498448 55499032 -162538126 - L1ME3 LINE L1 -343 5819 5111 1650 164 65 0 chr3 55500290 55500583 -162536575 - AluJb SINE Alu 0 312 1 1529 235 142 0 chr3 55500611 55501020 -162536138 - MLT1H1 LTR MaLR -73 482 16 1833 265 157 20 chr3 55501030 55502069 -162535089 + L2 LINE L2 2116 3280 -33 473 273 42 6 chr3 55503377 55503542 -162533616 - MER5B DNA MER1_type -7 171 1 3791 168 40 67 chr3 55504171 55505102 -162532056 - LTR5 LTR ERVK -63 906 1 2066 135 3 7 chr3 55505291 55505594 -162531564 - AluSx SINE Alu -10 302 1 183 227 188 62 chr3 55506604 55506732 -162530426 + MIR SINE MIR 21 164 -98 560 214 0 0 chr3 55508944 55509042 -162528116 - MER81 DNA DNA -16 98 1 365 248 107 8 chr3 55509108 55509229 -162527929 - MER103 DNA DNA -2 164 32 344 204 57 0 chr3 55509505 55509593 -162527565 - MER5A DNA MER1_type -84 105 13 627 204 147 0 chr3 55509615 55509772 -162527386 + MER5A DNA MER1_type 1 180 -9 198 274 32 0 chr3 55509786 55509848 -162527310 + MER5B DNA MER1_type 1 64 -114 362 311 40 13 chr3 55510994 55511145 -162526013 - MIR SINE MIR -92 170 16 1285 245 24 40 chr3 55511599 55511798 -162525360 + L1ME3 LINE L1 5743 5944 -218 2195 142 3 0 chr3 55511798 55512109 -162525049 + AluSx SINE Alu 1 312 0 1285 245 24 40 chr3 55512109 55512308 -162524850 + L1ME3 LINE L1 5944 6136 -26 2293 95 0 0 chr3 55512308 55512593 -162524565 + AluSx SINE Alu 1 285 -27 1285 245 24 40 chr3 55512593 55512618 -162524540 + L1ME3 LINE L1 6136 6160 -2 321 238 86 67 chr3 55513707 55513917 -162523241 + L1MEd LINE L1 602 815 -5304 1106 243 50 35 chr3 55513917 55514234 -162522924 + MLT1A2 LTR MaLR 1 322 -52 941 162 0 0 chr3 55514234 55514376 -162522782 + FLAM_C SINE Alu 2 143 0 292 158 53 0 chr3 55514376 55514433 -162522725 + MLT1A2 LTR MaLR 311 370 -4 533 236 54 14 chr3 55514483 55514631 -162522527 + MER97c DNA MER1_type? 26 179 -911 900 243 84 42 chr3 55514673 55515332 -162521826 + L1MEd LINE L1 869 1562 -4748 308 289 26 72 chr3 55515715 55515867 -162521291 + L1ME4a LINE L1 56 200 -5919 672 313 80 19 chr3 55516209 55516832 -162520326 + L1ME4a LINE L1 4034 4694 -1435 360 309 13 13 chr3 55516858 55517010 -162520148 + L1ME4a LINE L1 5717 5868 -285 332 250 40 20 chr3 55517230 55517330 -162519828 + L1ME4a LINE L1 5945 6046 -58 523 175 70 9 chr3 55517982 55518096 -162519062 + MER3 DNA MER1_type 8 128 -81 284 196 0 103 chr3 55518127 55518224 -162518934 + MER3 DNA MER1_type 122 208 -1 213 274 78 0 chr3 55518902 55519004 -162518154 - MIR SINE MIR -78 130 21 313 271 169 0 chr3 55522205 55522323 -162514835 + MIR SINE MIR 47 184 -78 707 214 5 75 chr3 55522595 55522782 -162514376 + MER5B DNA MER1_type 5 178 0 460 227 50 32 chr3 55523640 55523829 -162513329 + MER89 LTR ERV1 3 300 -259 351 194 73 40 chr3 55523826 55523950 -162513208 - MLT1K LTR MaLR -27 561 434 * 845 202 21 0 chr3 55524103 55524291 -162512867 - MER89 LTR ERV1 0 559 368 188 259 172 35 chr3 55524545 55524661 -162512497 - MIR3 SINE MIR -53 155 24 341 246 107 48 chr3 55524810 55525087 -162512071 + MLT1H LTR MaLR 79 384 -211 409 268 122 0 chr3 55525214 55525337 -162511821 - MER5B DNA MER1_type -3 175 38 270 286 251 20 chr3 55525565 55525768 -162511390 + MIR SINE MIR 13 262 0 240 258 81 0 chr3 55525879 55525941 -162511217 - MER91B DNA MER1_type -7 183 117 574 167 22 80 chr3 55525984 55526122 -162511036 - MER91B DNA MER1_type -60 130 1 425 209 270 37 chr3 55527712 55527875 -162509283 - MIR SINE MIR -11 251 51 379 279 30 56 chr3 55528090 55528287 -162508871 - MER63A DNA MER1_type -10 200 9 1509 96 5 5 chr3 55528414 55528613 -162508545 + AluSq SINE Alu 100 298 -15 282 347 56 42 chr3 55528961 55529105 -162508053 + MIR SINE MIR 117 262 0 207 201 0 0 chr3 55529165 55529211 -162507947 - MIR SINE MIR -67 141 103 252 308 33 0 chr3 55529676 55529796 -162507362 + (TCCA)n Simple_repeat Simple_repeat 3 126 0 843 174 7 0 chr3 55529812 55530102 -162507056 + (TCCA)n Simple_repeat Simple_repeat 1 292 0 199 253 126 11 chr3 55530459 55530546 -162506612 - L2 LINE L2 -12 3260 3164 473 273 115 11 chr3 55530868 55531051 -162506107 - L1ME LINE L1 -304 5817 5616 1454 227 51 16 chr3 55531633 55532082 -162505076 + L1M4 LINE L1 4894 5358 -788 2536 141 18 18 chr3 55532086 55532482 -162504676 - MSTD LTR MaLR 0 396 1 642 129 30 0 chr3 55532484 55532608 -162504550 + L1ME1 LINE L1 5908 6021 -145 3033 81 59 5 chr3 55532608 55532988 -162504170 + MLT2A1 LTR ERVL 1 408 -36 303 28 0 0 chr3 55532988 55533024 -162504134 + (TC)n Simple_repeat Simple_repeat 2 37 0 3033 81 59 5 chr3 55533024 55533064 -162504094 + MLT2A1 LTR ERVL 408 444 0 759 212 53 20 chr3 55533096 55533355 -162503803 + MLT1H LTR MaLR 1 310 -239 235 200 18 0 chr3 55533452 55533507 -162503651 + MLT1H LTR MaLR 463 518 -37 2232 206 130 22 chr3 55533514 55534159 -162502999 - L1MC4 LINE L1 -188 7854 7140 661 275 246 20 chr3 55534323 55534955 -162502203 + L2 LINE L2 2542 3312 -1 513 307 36 24 chr3 55535069 55535235 -162501923 + L2 LINE L2 3102 3269 -3 1329 141 10 5 chr3 55535339 55535538 -162501620 - AluJb SINE Alu -27 285 86 186 143 0 0 chr3 55535633 55535668 -162501490 + (A)n Simple_repeat Simple_repeat 1 35 0 306 340 133 11 chr3 55536020 55536291 -162500867 + HAL1b LINE L1 399 702 -646 342 322 83 74 chr3 55536361 55536808 -162500350 + L1ME4a LINE L1 1838 2288 -4108 402 280 39 19 chr3 55536824 55537031 -162500127 + L1ME4a LINE L1 5783 5993 -197 326 141 43 33 chr3 55537039 55537131 -162500027 + L1ME4a LINE L1 6060 6152 -38 1056 124 0 0 chr3 55537132 55537269 -162499889 - AluJo SINE Alu -175 137 1 288 176 0 0 chr3 55537741 55537792 -162499366 - MER5A DNA MER1_type -138 51 1 319 320 101 43 chr3 55538083 55538454 -162498704 + L2 LINE L2 2691 3081 -191 228 309 0 0 chr3 55538561 55538616 -162498542 + L2 LINE L2 3217 3271 -1 747 218 45 6 chr3 55538655 55538811 -162498347 + MER5B DNA MER1_type 2 163 -15 2262 109 149 11 chr3 55538928 55539304 -162497854 - MSTA LTR MaLR 0 428 1 336 277 102 7 chr3 55539726 55539863 -162497295 + MIR SINE MIR 97 246 -16 641 276 17 0 chr3 55540072 55540253 -162496905 - MER63A DNA MER1_type -26 184 1 509 279 91 0 chr3 55540293 55540447 -162496711 + MER5A DNA MER1_type 13 180 -9 222 184 0 0 chr3 55541336 55541374 -162495784 - L2 LINE L2 -2 3311 3274 284 280 17 17 chr3 55541770 55541888 -162495270 + (TCCA)n Simple_repeat Simple_repeat 2 119 0 240 100 0 0 chr3 55542498 55542538 -162494620 + (CA)n Simple_repeat Simple_repeat 2 41 0 475 269 132 38 chr3 55542554 55542977 -162494181 - L1ME4a LINE L1 -100 6021 5559 481 235 223 32 chr3 55544156 55544258 -162492900 - L2 LINE L2 -19 3294 3213 304 263 0 12 chr3 55544258 55544338 -162492820 + MER116 DNA Mariner 1 79 -1 481 235 223 32 chr3 55544338 55544486 -162492672 - L2 LINE L2 -100 3213 2996 190 297 0 40 chr3 55544611 55544685 -162492473 - MER5A DNA MER1_type -76 113 43 545 227 86 71 chr3 55544743 55544941 -162492217 + MIR SINE MIR 48 248 -14 25 0 0 0 chr3 55545050 55545075 -162492083 + AT_rich Low_complexity Low_complexity 1 25 0 1604 262 66 36 chr3 55545342 55545877 -162491281 - L1ME3A LINE L1 -155 6015 5434 2368 83 0 13 chr3 55545877 55546177 -162490981 - AluY SINE Alu -15 296 1 1604 262 66 36 chr3 55546177 55546568 -162490590 - L1ME3A LINE L1 -736 5434 5056 1546 199 120 33 chr3 55547261 55547361 -162489797 + MER63B DNA MER1_type 2 92 -970 2314 85 16 7 chr3 55547361 55547666 -162489492 - AluSq SINE Alu -5 308 1 1546 199 120 33 chr3 55547666 55547958 -162489200 + MER63B DNA MER1_type 92 428 -8 186 320 27 13 chr3 55548359 55548434 -162488724 + L2 LINE L2 2731 2806 -508 21 0 0 0 chr3 55548623 55548644 -162488514 + AT_rich Low_complexity Low_complexity 1 21 0 895 145 0 0 chr3 55548652 55548776 -162488382 - FLAM_C SINE Alu -9 124 1 2097 104 46 0 chr3 55548869 55549149 -162488009 - AluSq SINE Alu -20 293 1 220 283 0 0 chr3 55549590 55549636 -162487522 + (TG)n Simple_repeat Simple_repeat 1 46 0 451 255 214 0 chr3 55549752 55549897 -162487261 - MER5A DNA MER1_type 0 189 14 377 224 34 73 chr3 55549958 55550137 -162487021 + MER113 DNA MER1_type? 43 214 -307 1076 147 79 0 chr3 55550444 55550634 -162486524 - MER3 DNA MER1_type -4 205 1 198 103 0 0 chr3 55551539 55551568 -162485590 + (TTTCC)n Simple_repeat Simple_repeat 2 30 0 665 255 58 30 chr3 55552253 55552605 -162484553 - L1ME3A LINE L1 -219 5951 5576 294 238 15 95 chr3 55552688 55552991 -162484167 + L1MDa LINE L1 2443 2718 -3822 388 263 62 62 chr3 55552998 55553177 -162483981 + L1MDa LINE L1 2790 2968 -3572 467 315 99 23 chr3 55553186 55553570 -162483588 + L1MEd LINE L1 845 1257 -4862 285 261 134 29 chr3 55553813 55554050 -162483108 - L1MC4 LINE L1 -319 7723 7360 216 158 0 0 chr3 55554086 55554124 -162483034 + (CA)n Simple_repeat Simple_repeat 1 38 0 1955 157 3 22 chr3 55554199 55554517 -162482641 + AluJo SINE Alu 1 312 0 414 276 160 13 chr3 55555646 55555802 -162481356 + MER5A DNA MER1_type 9 187 -2 362 291 92 14 chr3 55555806 55555947 -162481211 - MER5B DNA MER1_type -4 174 23 2095 117 0 7 chr3 55556446 55556729 -162480429 - AluSx SINE Alu -31 281 1 465 327 136 30 chr3 55556847 55557186 -162479972 - L1 LINE L1 -3392 2754 2380 200 297 101 27 chr3 55557318 55557466 -162479692 + L2 LINE L2 3013 3171 -142 512 243 50 29 chr3 55557480 55557620 -162479538 - L2 LINE L2 -2 3311 3169 1868 271 97 41 chr3 55557655 55558282 -162478876 + L2 LINE L2 1690 2375 -939 1818 122 20 99 chr3 55558282 55558625 -162478533 + AluYb8 SINE Alu 1 316 -2 1868 271 97 41 chr3 55558625 55558808 -162478350 + L2 LINE L2 2375 2546 -768 1771 226 154 5 chr3 55558809 55559367 -162477791 + L1ME3A LINE L1 5523 6163 -7 2296 87 10 7 chr3 55559394 55559693 -162477465 - AluSp SINE Alu -13 300 1 409 271 22 107 chr3 55559697 55559762 -162477396 + L2 LINE L2 2556 2625 -689 2497 81 0 0 chr3 55559762 55560059 -162477099 - AluSc SINE Alu -12 297 1 409 271 22 107 chr3 55560059 55560119 -162477039 + L2 LINE L2 2625 2688 -626 1784 143 38 14 chr3 55560119 55560412 -162476746 - AluJb SINE Alu -12 300 1 409 271 22 107 chr3 55560412 55560510 -162476648 + L2 LINE L2 2688 2761 -553 551 273 82 52 chr3 55560510 55560645 -162476513 + L2 LINE L2 3015 3144 -169 1731 214 76 36 chr3 55560645 55561094 -162476064 + MLT1C LTR MaLR 1 467 0 551 273 82 52 chr3 55561094 55561225 -162475933 + L2 LINE L2 3144 3289 -24 1718 203 33 30 chr3 55561291 55561690 -162475468 + L1ME1 LINE L1 5761 6160 -6 639 137 29 0 chr3 55562019 55562121 -162475037 + BC200 scRNA scRNA 50 154 -46 5900 45 2 2 chr3 55562431 55563258 -162473900 + L1P2 LINE L1 4663 5489 -665 742 298 132 6 chr3 55563364 55563720 -162473438 - LTR16A LTR ERVL -20 430 30 2000 163 156 23 chr3 55563732 55564169 -162472989 - REP3 LTR ERV -6 556 62 1455 226 49 8 chr3 55564220 55564440 -162472718 + L1M4 LINE L1 3794 4036 -2110 2265 107 7 3 chr3 55564440 55564748 -162472410 - AluSx SINE Alu -3 309 1 1455 226 49 8 chr3 55564748 55564894 -162472264 + L1M4 LINE L1 4036 4175 -1971 526 290 60 6 chr3 55566042 55566225 -162470933 + LTR16C LTR ERVL 299 491 0 1522 334 80 23 chr3 55566445 55567583 -162469575 + HERV16 LTR ERVL 349 1572 -3424 833 328 55 17 chr3 55567678 55568169 -162468989 + HERV16 LTR ERVL 1744 2244 -2752 1317 312 74 17 chr3 55568223 55568894 -162468264 + HERV16 LTR ERVL 2340 3067 -1929 294 293 30 10 chr3 55569104 55569203 -162467955 + HERV16 LTR ERVL 4787 4887 -109 947 161 23 11 chr3 55569389 55569563 -162467595 - L1MB7 LINE L1 -15 6169 5994 788 265 53 7 chr3 55569607 55569946 -162467212 + LTR16C LTR ERVL 96 481 -10 297 239 15 0 chr3 55569954 55570021 -162467137 - L3 LINE CR1 -1091 486 419 2409 82 0 7 chr3 55570046 55570351 -162466807 + AluY SINE Alu 1 303 -8 850 232 0 0 chr3 55570378 55570533 -162466625 - AluJo SINE Alu -156 156 2 217 310 69 11 chr3 55570544 55570631 -162466527 - L3 LINE CR1 -1224 353 262 219 114 0 0 chr3 55571740 55571775 -162465383 + (CAA)n Simple_repeat Simple_repeat 2 36 0 221 295 66 0 chr3 55573863 55573924 -162463234 + L3 LINE CR1 1495 1559 -18 944 132 0 7 chr3 55575244 55575380 -162461778 - AluJo SINE Alu -177 135 1 1908 156 0 10 chr3 55576707 55577009 -162460149 + AluJb SINE Alu 12 310 -2 850 197 16 36 chr3 55577320 55577519 -162459639 + L1MC5 LINE L1 7729 8041 -1 29 94 0 0 chr3 55578532 55578617 -162458541 + AT_rich Low_complexity Low_complexity 1 85 0 2176 77 47 7 chr3 55579331 55579630 -162457528 + AluY SINE Alu 1 311 0 1277 104 85 20 chr3 55579728 55579929 -162457229 + MER46A DNA MER2_type 23 236 0 1333 90 0 0 chr3 55579942 55580108 -162457050 - AluSg/x SINE Alu -15 295 130 230 333 67 9 chr3 55580603 55580708 -162456450 + L2 LINE L2 3187 3297 -16 298 269 78 43 chr3 55580968 55581109 -162456049 + L1ME LINE L1 5572 5717 -404 589 280 0 7 chr3 55581194 55581344 -162455814 - MIR SINE MIR -98 164 16 22 0 0 0 chr3 55583647 55583669 -162453489 + AT_rich Low_complexity Low_complexity 1 22 0 2094 137 3 3 chr3 55583750 55584056 -162453102 + AluSx SINE Alu 1 306 -6 372 299 134 0 chr3 55584070 55584197 -162452961 - MIR3 SINE MIR -15 193 50 22 56 0 0 chr3 55584551 55584587 -162452571 + AT_rich Low_complexity Low_complexity 1 36 0 408 249 101 96 chr3 55585509 55585906 -162451252 + MLT1J2 LTR MaLR 1 399 -51 2370 75 0 0 chr3 55586471 55586765 -162450393 - AluY SINE Alu -17 294 1 275 312 65 133 chr3 55586836 55587006 -162450152 + L2 LINE L2 2828 3008 -264 975 241 44 10 chr3 55587006 55587209 -162449949 + MER63A DNA MER1_type 1 210 0 275 312 65 133 chr3 55587209 55587503 -162449655 + L2 LINE L2 3008 3260 -12 313 293 83 51 chr3 55587755 55587912 -162449246 + MIR3 SINE MIR 3 164 -44 298 269 115 8 chr3 55588234 55588364 -162448794 - MIR SINE MIR 0 262 119 284 299 21 0 chr3 55588507 55588604 -162448554 + L2 LINE L2 3199 3297 -16 454 264 90 28 chr3 55590083 55590261 -162446897 - MER5A DNA MER1_type 0 189 1 204 97 0 0 chr3 55591355 55591386 -162445772 + (TG)n Simple_repeat Simple_repeat 2 32 0 221 259 0 0 chr3 55591608 55591662 -162445496 - L2 LINE L2 0 3272 3219 219 222 22 0 chr3 55593459 55593504 -162443654 - L2 LINE L2 -10 3262 3217 17010 124 60 6 chr3 55593798 55596376 -162440782 - Tigger2 DNA MER2_type 0 2718 1 376 361 92 44 chr3 55596390 55596728 -162440430 - L2 LINE L2 -14 3258 2905 387 307 67 28 chr3 55597537 55597716 -162439442 - MIR SINE MIR -13 249 64 2371 90 0 0 chr3 55598603 55598902 -162438256 - AluSg SINE Alu -11 299 1 792 188 0 0 chr3 55599079 55599207 -162437951 + FRAM SINE Alu 1 128 -48 894 270 75 42 chr3 55599508 55599986 -162437172 + L1MC4a LINE L1 5450 5943 -178 340 319 154 46 chr3 55601198 55601661 -162435497 + L2 LINE L2 1713 2255 -1059 2349 94 3 0 chr3 55601661 55601960 -162435198 + AluSp SINE Alu 1 300 -13 340 319 154 46 chr3 55601960 55602086 -162435072 + L2 LINE L2 2255 2366 -948 11177 113 27 5 chr3 55602513 55604917 -162432241 + L1PA10 LINE L1 3713 6168 0 1190 134 30 35 chr3 55605083 55605285 -162431873 - L1MC1 LINE L1 0 6333 6133 1465 169 0 4 chr3 55606640 55606895 -162430263 - AluJo SINE Alu -49 263 10 1862 102 8 0 chr3 55607017 55607262 -162429896 - AluSx SINE Alu -13 299 53 774 133 0 0 chr3 55607476 55607625 -162429533 + AluJb SINE Alu 170 318 0 183 80 0 0 chr3 55607730 55607755 -162429403 + (TG)n Simple_repeat Simple_repeat 2 26 0 219 189 0 0 chr3 55608966 55609019 -162428139 + (TG)n Simple_repeat Simple_repeat 2 54 0 362 291 39 19 chr3 55609445 55609548 -162427610 - L2 LINE L2 -6 3266 3162 466 274 67 94 chr3 55610843 55611427 -162425731 + L1MC5 LINE L1 7268 7877 -165 360 230 86 69 chr3 55611809 55611983 -162425175 + L1ME4a LINE L1 5750 5926 -195 236 301 48 0 chr3 55612685 55612768 -162424390 + L1MC/D LINE L1 5791 5877 -1931 2332 227 43 28 chr3 55613042 55613685 -162423473 + L1ME1 LINE L1 5517 6161 -5 284 248 91 0 chr3 55613692 55613813 -162423345 - L1ME4a LINE L1 -16 6105 5974 377 288 42 0 chr3 55613948 55614066 -162423092 - L1ME4a LINE L1 -230 5891 5769 2490 88 0 0 chr3 55614243 55614549 -162422609 + AluSx SINE Alu 1 306 -6 339 237 74 37 chr3 55614589 55614724 -162422434 + MIR SINE MIR 99 238 -24 2076 136 0 0 chr3 55614939 55615225 -162421933 + AluJb SINE Alu 1 286 -26 790 33 0 0 chr3 55615464 55615555 -162421603 + L1PA5 LINE L1 6056 6146 -8 35 24 0 0 chr3 55615555 55615597 -162421561 + AT_rich Low_complexity Low_complexity 1 42 0 351 260 96 10 chr3 55615960 55616064 -162421094 - MIR SINE MIR -60 148 36 553 152 10 0 chr3 55616257 55616356 -162420802 + MER5A DNA MER1_type 10 109 -80 218 195 0 0 chr3 55617830 55617871 -162419287 + (TG)n Simple_repeat Simple_repeat 1 41 0 739 286 86 33 chr3 55618330 55618843 -162418315 - L1MC4a LINE L1 -1895 5913 5374 647 226 69 0 chr3 55619905 55620064 -162417094 - MER5A DNA MER1_type -16 173 4 458 211 218 0 chr3 55620541 55620683 -162416475 - MER5A DNA MER1_type -6 183 11 316 278 102 35 chr3 55620728 55620983 -162416175 - HAL1 LINE L1 -208 2299 2028 252 59 0 0 chr3 55621102 55621136 -162416022 + (CAAAC)n Simple_repeat Simple_repeat 1 34 0 252 266 94 39 chr3 55621822 55621950 -162415208 + L2 LINE L2 2952 3086 -227 1783 245 78 18 chr3 55621989 55622504 -162414654 + MLT1H LTR MaLR 4 549 0 589 286 47 0 chr3 55622509 55622701 -162414457 + L2 LINE L2 3113 3313 0 514 244 0 17 chr3 55622802 55622917 -162414241 + MIR SINE MIR 48 160 -102 814 185 0 0 chr3 55622917 55623047 -162414111 + FLAM_C SINE Alu 1 130 -13 210 37 0 0 chr3 55623047 55623074 -162414084 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 211 365 115 0 chr3 55623332 55623480 -162413678 + MIR SINE MIR 54 218 -44 265 250 44 0 chr3 55623797 55623865 -162413293 - MIR SINE MIR -82 180 110 378 266 57 0 chr3 55623947 55624071 -162413087 - MIR SINE MIR -11 251 121 2385 96 0 0 chr3 55624610 55624911 -162412247 - AluSp SINE Alu -12 301 1 2312 112 0 3 chr3 55625119 55625423 -162411735 - AluSq SINE Alu -10 303 1 1006 135 83 5 chr3 55625433 55625626 -162411532 - L1MA7 LINE L1 -5 6286 6079 5953 147 35 17 chr3 55625991 55626177 -162410981 + L1MC1 LINE L1 5169 5350 -983 655 62 0 0 chr3 55626177 55626258 -162410900 + AluSg1 SINE Alu 2 82 -227 5953 147 35 17 chr3 55626258 55627217 -162409941 + L1MC1 LINE L1 5350 6333 0 2299 102 0 0 chr3 55627599 55627893 -162409265 + AluSg SINE Alu 1 294 -16 311 247 24 0 chr3 55628283 55628368 -162408790 + L2 LINE L2 3225 3311 -2 594 201 119 46 chr3 55629283 55629477 -162407681 - MER3 DNA MER1_type 0 209 2 205 255 0 0 chr3 55629936 55629983 -162407175 - L2 LINE L2 -38 3234 3188 348 24 0 0 chr3 55630172 55630213 -162406945 + (TTA)n Simple_repeat Simple_repeat 1 41 0 996 194 5 42 chr3 55632962 55633105 -162404053 + MER3 DNA MER1_type 1 135 -74 1560 161 38 28 chr3 55633105 55633396 -162403762 - AluJb SINE Alu -18 294 1 996 194 5 42 chr3 55633396 55633469 -162403689 + MER3 DNA MER1_type 135 209 0 387 296 28 28 chr3 55634393 55634609 -162402549 + L1MC4a LINE L1 5704 5919 -1889 279 54 0 0 chr3 55634616 55634653 -162402505 + (TG)n Simple_repeat Simple_repeat 1 37 0 243 305 54 68 chr3 55635566 55635861 -162401297 + L2 LINE L2 2896 3186 -86 1794 171 3 0 chr3 55636364 55636662 -162400496 - AluJo SINE Alu -13 299 1 500 308 118 3 chr3 55637168 55637457 -162399701 - L1ME LINE L1 -304 5817 5496 739 80 36 0 chr3 55637636 55637774 -162399384 + (TA)n Simple_repeat Simple_repeat 1 143 0 657 228 42 0 chr3 55638343 55638510 -162398648 + L1ME4a LINE L1 5945 6118 -3 1796 221 60 64 chr3 55638728 55639324 -162397834 - L1MC4 LINE L1 -14 8028 7435 836 162 43 22 chr3 55639436 55639621 -162397537 - L1MC4 LINE L1 -1208 6834 6646 3361 111 2 10 chr3 55639642 55640129 -162397029 + L1PA15 LINE L1 5675 6157 -8 403 241 85 14 chr3 55640361 55640502 -162396656 - L1MA10 LINE L1 -5 6329 6179 205 216 39 0 chr3 55640506 55640557 -162396601 + CT-rich Low_complexity Low_complexity 3 55 0 2295 108 3 3 chr3 55640557 55640854 -162396304 - AluSx SINE Alu -15 297 1 1719 230 60 16 chr3 55640857 55641288 -162395870 - L1ME1 LINE L1 -165 6001 5552 2230 100 3 13 chr3 55642830 55643130 -162394028 + AluSx SINE Alu 3 299 -13 208 226 0 0 chr3 55645375 55645437 -162391721 + A-rich Low_complexity Low_complexity 1 62 0 452 185 87 0 chr3 55646172 55646264 -162390894 + MER103 DNA DNA 2 101 -65 327 217 87 52 chr3 55646267 55646285 -162390873 + MER103 DNA DNA 42 58 -108 2341 95 7 0 chr3 55646285 55646591 -162390567 + AluSq SINE Alu 1 308 -5 327 217 87 52 chr3 55646591 55646687 -162390471 + MER103 DNA DNA 58 160 -6 216 310 6 0 chr3 55647316 55647475 -162389683 + (TG)n Simple_repeat Simple_repeat 1 160 0 530 248 56 8 chr3 55647477 55647602 -162389556 + MER45A DNA AcHobo 3 133 -45 213 178 0 0 chr3 55647650 55647695 -162389463 + (TG)n Simple_repeat Simple_repeat 1 45 0 380 414 0 6 chr3 55647893 55648050 -162389108 + L2 LINE L2 3117 3272 0 763 81 18 9 chr3 55650586 55650697 -162386461 + HY1 scRNA scRNA 1 112 0 492 235 114 7 chr3 55653340 55653489 -162383669 + LTR16A LTR ERVL 286 450 0 304 322 0 0 chr3 55653730 55653820 -162383338 - MIR SINE MIR -104 158 69 903 257 8 20 chr3 55655475 55655728 -162381430 + MLT1H1 LTR MaLR 27 276 -279 441 312 119 35 chr3 55655758 55656069 -162381089 - L2 LINE L2 -6 3266 2930 437 150 33 111 chr3 55656173 55656229 -162380929 - L1MC5 LINE L1 -36 7925 7866 3511 129 17 13 chr3 55656229 55656754 -162380404 + MER1A DNA MER1_type 1 527 0 437 150 33 111 chr3 55656754 55656850 -162380308 - L1MC5 LINE L1 -95 7866 7785 209 185 37 19 chr3 55656855 55656909 -162380249 + CT-rich Low_complexity Low_complexity 3 57 0 442 316 126 29 chr3 55657335 55657850 -162379308 - L2 LINE L2 -378 2936 2372 1010 250 130 34 chr3 55658182 55658658 -162378500 - MLT1H1 LTR MaLR -31 524 3 280 330 19 10 chr3 55658823 55658926 -162378232 - MIR SINE MIR -140 122 19 1604 211 25 91 chr3 55659707 55660258 -162376900 + MLT1H LTR MaLR 3 517 -32 1768 215 62 17 chr3 55660695 55661175 -162375983 - Charlie4a DNA MER1_type -4 504 3 281 165 196 105 chr3 55661593 55661687 -162375471 + MER5A DNA MER1_type 23 134 -55 1824 133 56 11 chr3 55661687 55661973 -162375185 - AluJo SINE Alu -13 299 1 281 165 196 105 chr3 55661973 55662011 -162375147 + MER5A DNA MER1_type 134 167 -22 1253 137 213 28 chr3 55663952 55664201 -162372957 - AluJo SINE Alu -7 295 1 188 340 11 11 chr3 55667712 55667806 -162369352 - MIR3 SINE MIR -104 104 11 242 219 167 31 chr3 55670748 55670844 -162366314 + MIR SINE MIR 15 123 -139 217 336 139 15 chr3 55671512 55671649 -162365509 - L3 LINE CR1 -231 1346 1193 2302 122 0 0 chr3 55672007 55672311 -162364847 - AluSx SINE Alu -8 304 1 2243 114 3 0 chr3 55672336 55672625 -162364533 - AluSg SINE Alu -20 290 1 232 280 206 19 chr3 55673148 55673255 -162363903 - L2 LINE L2 -214 3058 2932 235 49 49 0 chr3 55673289 55673330 -162363828 + (CAA)n Simple_repeat Simple_repeat 3 45 0 466 250 46 0 chr3 55673337 55673445 -162363713 + L1MEc LINE L1 111 223 -6173 2991 214 36 31 chr3 55673455 55674036 -162363122 + L1MEc LINE L1 2179 2756 -3459 2322 100 10 0 chr3 55674036 55674335 -162362823 + AluSq SINE Alu 1 302 -11 2991 214 36 31 chr3 55674335 55674415 -162362743 + L1MEc LINE L1 2756 2834 -3381 1418 72 116 5 chr3 55674415 55674622 -162362536 - MER30 DNA MER1_type 0 230 1 2991 214 36 31 chr3 55674622 55674809 -162362349 + L1MEc LINE L1 2834 2993 -3222 1101 153 157 4 chr3 55675377 55675612 -162361546 + L1MB7 LINE L1 5914 6184 0 329 322 25 106 chr3 55675940 55676300 -162360858 + L2 LINE L2 2928 3258 -14 457 122 148 6 chr3 55677795 55677891 -162359267 - MER5B DNA MER1_type 0 178 3 436 309 116 35 chr3 55677963 55678309 -162358849 - L3 LINE CR1 -50 1527 1154 423 311 0 0 chr3 55678801 55678907 -162358251 - L2 LINE L2 -9 3304 3199 266 227 42 42 chr3 55679398 55679488 -162357670 + MIR SINE MIR 101 189 -73 358 247 17 2 chr3 55679594 55679700 -162357458 + MIR SINE MIR 43 150 -58 314 333 132 13 chr3 55679701 55679860 -162357298 - MIR SINE MIR -22 240 63 334 251 140 16 chr3 55679892 55680018 -162357140 - MIR SINE MIR -40 168 25 360 321 36 12 chr3 55680918 55681086 -162356072 + L1MDb LINE L1 177 348 -6195 * 2962 191 71 34 chr3 55681081 55681903 -162355255 + L1MDb LINE L1 1061 1912 -4628 906 230 5 0 chr3 55681913 55682104 -162355054 + L1M4 LINE L1 3758 3949 -2197 385 278 43 57 chr3 55682124 55682333 -162354825 - L1ME LINE L1 -383 5738 5533 1595 254 84 30 chr3 55682451 55683236 -162353922 + L2 LINE L2 2477 3311 -2 337 264 168 0 chr3 55683240 55683437 -162353721 + L1ME1 LINE L1 5785 6014 -107 506 217 130 0 chr3 55683516 55683677 -162353481 + L1ME1 LINE L1 5985 6166 0 235 263 233 45 chr3 55684357 55684490 -162352668 - MIR3 SINE MIR -33 175 18 206 329 0 24 chr3 55684532 55684617 -162352541 - MIR3 SINE MIR -32 176 94 223 353 43 9 chr3 55684800 55684916 -162352242 + MIR3 SINE MIR 54 173 -35 696 251 44 60 chr3 55685694 55685841 -162351317 - MER112 DNA MER1_type -12 248 105 2203 122 3 0 chr3 55685841 55686145 -162351013 - AluSg SINE Alu -5 305 1 696 251 44 60 chr3 55686145 55686248 -162350910 - MER112 DNA MER1_type -155 105 2 865 222 14 56 chr3 55687142 55687358 -162349800 - MER3 DNA MER1_type 0 209 3 4304 139 30 17 chr3 55687501 55688214 -162348944 + MER50 LTR ERV1 1 722 -12 1038 186 43 24 chr3 55688214 55688424 -162348734 + MER50-int LTR ERV1 7 220 -6985 573 200 20 0 chr3 55688436 55688536 -162348622 - FLAM_A SINE Alu -40 102 1 260 249 146 8 chr3 55689553 55689671 -162347487 + MIR SINE MIR 23 161 -47 362 293 94 14 chr3 55690264 55690428 -162346730 + MIR SINE MIR 30 203 -59 244 265 48 24 chr3 55690982 55691065 -162346093 + MIR SINE MIR 3 87 -175 239 250 125 0 chr3 55691275 55691387 -162345771 - L1ME4a LINE L1 -1 6120 5995 327 65 0 0 chr3 55691525 55691571 -162345587 + (TG)n Simple_repeat Simple_repeat 2 47 0 282 250 13 13 chr3 55691581 55691657 -162345501 + Charlie4 DNA MER1_type 1882 1957 -4 364 261 164 36 chr3 55691676 55691871 -162345287 - L1ME4a LINE L1 -172 5949 5730 564 269 70 58 chr3 55696109 55696351 -162340807 + MIR SINE MIR 18 262 0 198 258 52 72 chr3 55697333 55697430 -162339728 - MIR SINE MIR -50 212 118 307 198 176 11 chr3 55698011 55698102 -162339056 - MIR SINE MIR -109 153 48 343 327 111 42 chr3 55698571 55698788 -162338370 - MIR SINE MIR -25 237 6 262 321 182 16 chr3 55699356 55699543 -162337615 + MIR SINE MIR 29 246 -16 1415 97 57 48 chr3 55701467 55701695 -162335463 - MER30 DNA MER1_type 0 230 1 962 166 26 100 chr3 55701936 55702207 -162334951 + MLT1B LTR MaLR 1 251 -139 2031 138 0 0 chr3 55703419 55703750 -162333408 + AluSx SINE Alu 3 333 0 2641 216 48 45 chr3 55704099 55704962 -162332196 + L1ME4a LINE L1 4475 5339 -807 568 223 36 0 chr3 55705522 55705661 -162331497 - MER113 DNA MER1_type? -58 463 320 398 195 30 115 chr3 55708004 55708204 -162328954 + L1MC5 LINE L1 7153 7335 -626 659 219 8 8 chr3 55708231 55708354 -162328804 - MER5B DNA MER1_type -55 123 1 451 185 0 0 chr3 55708357 55708438 -162328720 + L1MC5 LINE L1 7333 7413 -548 1446 200 58 58 chr3 55708440 55708663 -162328495 + L1MC5 LINE L1 7479 7704 -257 2019 151 6 10 chr3 55708663 55708974 -162328184 + AluSx SINE Alu 3 312 0 1446 200 58 58 chr3 55708974 55709185 -162327973 + L1MC5 LINE L1 7703 7913 -48 562 258 170 13 chr3 55709196 55709425 -162327733 + MER102b DNA MER1_type 74 338 -3 194 0 39 0 chr3 55710592 55710618 -162326540 + (CA)n Simple_repeat Simple_repeat 1 27 0 575 250 7 34 chr3 55711237 55711385 -162325773 + MIR SINE MIR 119 262 0 493 225 206 41 chr3 55716591 55716809 -162320349 - MIR SINE MIR -7 255 2 345 130 19 0 chr3 55717571 55717625 -162319533 - MER3 DNA MER1_type -154 55 1 348 304 99 22 chr3 55717746 55717927 -162319231 + L1ME4a LINE L1 5614 5808 -362 655 182 61 20 chr3 55717928 55718076 -162319082 - MER58B DNA MER1_type 0 341 188 327 212 94 74 chr3 55718128 55718295 -162318863 + L1ME4a LINE L1 5833 6005 -116 4565 197 47 20 chr3 55718443 55719516 -162317642 + L1MC4 LINE L1 6942 8042 0 856 159 7 0 chr3 55719536 55719674 -162317484 + FLAM_C SINE Alu 1 139 -4 200 261 72 0 chr3 55719856 55719925 -162317233 + MIR SINE MIR 59 132 -76 1686 160 0 11 chr3 55721145 55721407 -162315751 + AluJo SINE Alu 8 266 -46 1557 192 23 0 chr3 55721461 55721727 -162315431 + AluJo SINE Alu 3 274 -38 255 200 15 15 chr3 55722203 55722268 -162314890 + MER5B DNA MER1_type 104 168 -10 531 0 0 0 chr3 55724713 55724772 -162312386 + (TA)n Simple_repeat Simple_repeat 2 60 0 2655 17 0 13 chr3 55726220 55726521 -162310637 - AluY SINE Alu -14 297 1 2443 97 3 0 chr3 55727429 55727739 -162309419 + AluSq SINE Alu 1 311 -2 240 239 120 21 chr3 55728117 55728259 -162308899 - L1ME4a LINE L1 0 6121 5966 605 176 38 6 chr3 55728344 55728479 -162308679 - MER5A DNA MER1_type -46 143 4 302 302 0 12 chr3 55729262 55729348 -162307810 + L2 LINE L2 3188 3272 0 281 225 0 34 chr3 55729621 55729710 -162307448 - HsTC2 DNA Tc2 -1811 87 2 441 248 47 81 chr3 55729710 55729859 -162307299 - MIR SINE MIR -107 155 12 347 337 20 59 chr3 55730410 55730612 -162306546 - MIR SINE MIR -44 218 25 555 286 5 54 chr3 55730638 55730823 -162306335 + MER91B DNA MER1_type 3 178 -12 607 321 44 20 chr3 55733330 55733579 -162303579 - MIR SINE MIR -6 256 2 180 225 84 14 chr3 55734264 55734335 -162302823 - L2 LINE L2 -60 3212 3137 962 266 31 0 chr3 55734405 55734694 -162302464 + L1ME1 LINE L1 5801 6098 -68 321 188 62 62 chr3 55737945 55738025 -162299133 + L2 LINE L2 3234 3313 0 2247 64 7 34 chr3 55738143 55738439 -162298719 - AluSc SINE Alu -21 288 1 1934 149 19 68 chr3 55739121 55739531 -162297627 + MLT1B LTR MaLR 1 390 0 24 53 0 0 chr3 55741663 55741701 -162295457 + AT_rich Low_complexity Low_complexity 1 38 0 605 161 107 36 chr3 55743428 55743596 -162293562 + MER33 DNA MER1_type 34 213 -111 3010 147 49 17 chr3 55744401 55744931 -162292227 - MER21A LTR ERV1 -9 922 376 1154 106 89 64 chr3 55744936 55745018 -162292140 - MER21A LTR ERV1 -667 264 186 2473 71 3 13 chr3 55745018 55745327 -162291831 + AluSp SINE Alu 1 306 -7 1154 106 89 64 chr3 55745327 55745479 -162291679 - MER21A LTR ERV1 -745 186 24 469 92 0 0 chr3 55745481 55745546 -162291612 + (TAGA)n Simple_repeat Simple_repeat 3 67 0 393 249 26 72 chr3 55745691 55745850 -162291308 - MIR SINE MIR -66 142 40 573 332 58 4 chr3 55746166 55746392 -162290766 - MIR SINE MIR -15 247 10 3205 188 72 7 chr3 55747018 55747700 -162289458 - MER21B LTR ERV1 -1 862 137 455 139 47 12 chr3 55747714 55747800 -162289358 + MER50 LTR ERV1 8 96 -638 12855 168 14 31 chr3 55747801 55750226 -162286932 + MER50-int LTR ERV1 1095 3362 -3843 829 266 47 53 chr3 55750515 55750562 -162286596 + MER50-int LTR ERV1 2919 2965 -2504 2247 87 7 42 chr3 55750562 55750871 -162286287 + AluSp SINE Alu 1 298 -15 829 266 47 53 chr3 55750871 55751312 -162285846 + MER50-int LTR ERV1 2965 3918 -1551 829 309 34 35 chr3 55751495 55752170 -162284988 - MER50-int LTR ERV1 -1201 3753 3080 907 299 62 57 chr3 55752359 55753408 -162283750 + MER50-int LTR ERV1 4655 5718 -1808 1158 39 19 0 chr3 55753436 55753590 -162283568 + MER50-int LTR ERV1 7041 7197 -8 3462 160 65 40 chr3 55753590 55754284 -162282874 + MER50 LTR ERV1 1 711 -23 583 182 45 0 chr3 55754285 55754395 -162282763 - MER21B LTR ERV1 -748 115 1 693 253 98 47 chr3 55754820 55754870 -162282288 - L2 LINE L2 0 3313 3267 1107 208 57 0 chr3 55754870 55755082 -162282076 - MER58A DNA MER1_type 0 224 1 693 253 98 47 chr3 55755082 55755308 -162281850 - L2 LINE L2 -46 3267 3023 859 144 0 0 chr3 55755309 55755427 -162281731 + FLAM_C SINE Alu 1 118 -15 184 162 54 0 chr3 55755464 55755501 -162281657 - L2 LINE L2 -276 3037 2999 1139 260 67 65 chr3 55755501 55756055 -162281103 + MLT1F1 LTR MaLR 1 555 -12 860 220 85 20 chr3 55756100 55756347 -162280811 + MLT1G1 LTR MaLR 1 242 -348 2238 77 0 55 chr3 55756347 55756658 -162280500 + AluY SINE Alu 2 295 -16 860 220 85 20 chr3 55756658 55756706 -162280452 + MLT1G1 LTR MaLR 242 285 -305 546 269 19 13 chr3 55756714 55756870 -162280288 - L2 LINE L2 -315 2998 2842 * 980 216 141 32 chr3 55756840 55757187 -162279971 - L2 LINE L2 -639 2675 2291 1113 257 139 53 chr3 55757197 55757702 -162279456 - MER41C LTR ERV1 -5 549 2 348 200 33 33 chr3 55757705 55757795 -162279363 - L2 LINE L2 -1027 2287 2198 2485 61 3 7 chr3 55757838 55758135 -162279023 + AluY SINE Alu 1 296 -15 1038 161 42 21 chr3 55758138 55758383 -162278775 - L1MB2 LINE L1 0 6168 5935 1388 150 4 52 chr3 55758406 55758673 -162278485 + LTR8 LTR ERV1 1 254 -437 2029 110 0 0 chr3 55758677 55758932 -162278226 + AluSx SINE Alu 35 289 -23 370 234 8 70 chr3 55759523 55759651 -162277507 - MER5A DNA MER1_type -42 147 28 260 337 98 39 chr3 55759608 55759813 -162277345 - MIR SINE MIR -45 217 1 * 502 328 28 6 chr3 55759813 55759940 -162277218 + MIR SINE MIR 127 257 -5 336 263 0 0 chr3 55759949 55760063 -162277095 + (CAT)n Simple_repeat Simple_repeat 2 115 0 259 269 45 15 chr3 55760084 55760151 -162277007 - MIR SINE MIR -124 84 16 2172 105 6 38 chr3 55760253 55760567 -162276591 - AluSg SINE Alu -6 304 1 643 168 40 0 chr3 55761613 55761738 -162275420 - MSTB2 LTR MaLR -327 130 1 342 267 92 8 chr3 55761739 55761870 -162275288 + LTR16A1 LTR ERVL 316 457 0 270 315 28 0 chr3 55761910 55762018 -162275140 - MER103 DNA DNA -24 142 32 308 350 25 0 chr3 55762036 55762156 -162275002 + MIR SINE MIR 20 142 -120 1511 241 119 34 chr3 55762163 55762749 -162274409 + L1ME1 LINE L1 5527 6162 -4 29 0 0 0 chr3 55763009 55763038 -162274120 + AT_rich Low_complexity Low_complexity 1 29 0 561 158 0 0 chr3 55763598 55763699 -162273459 + GA-rich Low_complexity Low_complexity 2 102 0 1194 52 35 0 chr3 55763699 55763871 -162273287 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 453 329 47 42 chr3 55764170 55764298 -162272860 + MIR SINE MIR 19 150 -112 1694 148 30 33 chr3 55764298 55764477 -162272681 - AluSc SINE Alu -5 304 125 207 0 0 0 chr3 55764477 55764500 -162272658 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1694 148 30 33 chr3 55764500 55764625 -162272533 - AluSc SINE Alu -184 125 1 453 329 47 42 chr3 55764625 55764709 -162272449 + MIR SINE MIR 150 232 -30 506 79 16 0 chr3 55764722 55764785 -162272373 + AluY SINE Alu 35 98 -213 1441 115 86 0 chr3 55765066 55765275 -162271883 - MER30 DNA MER1_type 0 230 4 3449 174 65 23 chr3 55765387 55766115 -162271043 + L1MA9 LINE L1 5349 6106 -206 5292 232 82 51 chr3 55767897 55768319 -162268839 - L1MB7 LINE L1 -295 5889 5482 2705 164 24 0 chr3 55768319 55768735 -162268423 - MSTB LTR MaLR 0 426 1 5292 232 82 51 chr3 55768735 55768987 -162268171 - L1MB7 LINE L1 -702 5482 5239 2394 66 3 0 chr3 55768987 55769274 -162267884 - AluY SINE Alu -23 288 1 5292 232 82 51 chr3 55769274 55771135 -162266023 - L1MB7 LINE L1 -945 5239 3437 204 40 0 0 chr3 55771135 55771160 -162265998 + (TC)n Simple_repeat Simple_repeat 1 25 0 1958 133 0 0 chr3 55771160 55771438 -162265720 - AluSx SINE Alu -32 280 3 5292 232 82 51 chr3 55771438 55771631 -162265527 - L1MB7 LINE L1 -2746 3438 3083 194 324 41 90 chr3 55772196 55772341 -162264817 - L2 LINE L2 -182 3090 2953 661 196 69 123 chr3 55772436 55772802 -162264356 + MLT1H LTR MaLR 129 542 0 374 0 0 21 chr3 55772883 55772930 -162264228 + (TA)n Simple_repeat Simple_repeat 1 46 0 24 32 0 0 chr3 55774859 55774890 -162262268 + AT_rich Low_complexity Low_complexity 1 31 0 6392 116 21 2 chr3 55775068 55776542 -162260616 + L1PA12 LINE L1 4676 6168 0 1174 213 25 33 chr3 55778515 55778755 -162258403 + MER8 DNA MER2_type 2 239 0 791 272 74 25 chr3 55779163 55779406 -162257752 + MER54A LTR ERVL 303 557 -344 245 377 74 30 chr3 55779903 55780200 -162256958 + L3 LINE CR1 189 498 -1079 1727 186 47 3 chr3 55780715 55781053 -162256105 + MLT1A1 LTR MaLR 1 353 -12 458 364 41 21 chr3 55781147 55781438 -162255720 + ERVL LTR ERVL 1390 1686 -4078 * 860 286 45 32 chr3 55781425 55781736 -162255422 + ERVL LTR ERVL 2866 3180 -2474 * 2282 183 59 39 chr3 55781710 55782376 -162254782 + pTR5 LTR ERV1 741 1419 -1019 343 301 109 25 chr3 55782529 55782768 -162254390 + L2 LINE L2 2964 3222 -91 2047 142 0 3 chr3 55782789 55783099 -162254059 - AluSx SINE Alu -3 309 1 359 234 8 70 chr3 55784078 55784206 -162252952 - MER5A DNA MER1_type -42 147 28 238 327 99 40 chr3 55784163 55784365 -162252793 - MIR SINE MIR -45 217 4 * 470 328 28 6 chr3 55784365 55784495 -162252663 + MIR SINE MIR 124 257 -5 336 263 0 0 chr3 55784504 55784618 -162252540 + (CAT)n Simple_repeat Simple_repeat 2 115 0 257 269 45 15 chr3 55784639 55784706 -162252452 - MIR SINE MIR -124 84 16 2103 108 6 38 chr3 55784808 55785122 -162252036 - AluSg SINE Alu -6 304 1 393 331 106 0 chr3 55786219 55786370 -162250788 + MIR SINE MIR 90 256 -6 632 207 24 71 chr3 55786403 55786526 -162250632 + MER5B DNA MER1_type 1 115 -63 2107 89 92 0 chr3 55786526 55786808 -162250350 - AluSc SINE Alu -1 308 1 632 207 24 71 chr3 55786808 55786853 -162250305 + MER5B DNA MER1_type 115 161 -17 2255 157 69 65 chr3 55787117 55787581 -162249577 - MLT1C LTR MaLR 0 467 2 237 213 62 25 chr3 55787680 55787760 -162249398 - MIR3 SINE MIR -48 160 78 355 93 56 0 chr3 55789043 55789097 -162248061 + MLT1A2 LTR MaLR 318 374 0 224 247 247 40 chr3 55789229 55789379 -162247779 - MIR SINE MIR -54 208 28 191 333 0 0 chr3 55790928 55790991 -162246167 - L2 LINE L2 -5 3308 3246 218 291 0 0 chr3 55791047 55791102 -162246056 + MER5B DNA MER1_type 21 75 -103 259 259 69 132 chr3 55791449 55791916 -162245242 - L2 LINE L2 -59 3213 2731 198 326 45 67 chr3 55792311 55792400 -162244758 + L2 LINE L2 3150 3236 -36 1687 176 0 29 chr3 55794139 55794452 -162242706 + AluJo SINE Alu 1 304 -8 1226 127 49 20 chr3 55794452 55794813 -162242345 - MER4D LTR ERV1 -454 449 1 855 233 46 54 chr3 55794818 55795191 -162241967 + L1ME LINE L1 530 899 -5171 27 73 0 0 chr3 55795236 55795291 -162241867 + GC_rich Low_complexity Low_complexity 1 55 0 1082 176 118 9 chr3 55797050 55797373 -162239785 + L1ME LINE L1 2808 3165 -2915 937 178 12 12 chr3 55797373 55797542 -162239616 + FRAM SINE Alu 1 162 -14 2421 259 15 12 chr3 55797600 55798286 -162238872 + L1ME LINE L1 3229 3916 -2164 506 256 99 47 chr3 55798671 55798695 -162238463 + MER5A DNA MER1_type 9 30 -159 2337 113 0 0 chr3 55798695 55799005 -162238153 - AluY SINE Alu -1 310 1 1444 170 39 100 chr3 55799007 55799337 -162237821 - AluJb SINE Alu -2 310 1 506 256 99 47 chr3 55799337 55799481 -162237677 + MER5A DNA MER1_type 30 189 0 537 142 32 14 chr3 55799701 55799812 -162237346 + MER61E LTR ERV1 1 119 -484 246 333 0 0 chr3 55799916 55799994 -162237164 + LTR28 LTR ERV1 147 224 -796 * 315 172 141 0 chr3 55799986 55800050 -162237108 + MER51A LTR ERV1 208 280 -354 * 664 217 49 25 chr3 55800026 55800378 -162236780 + MER52A LTR ERV1 336 1232 -32 3389 235 51 52 chr3 55800434 55800703 -162236455 - L1M LINE L1 -744 5402 5134 1636 211 6 6 chr3 55800703 55801015 -162236143 - AluJo SINE Alu 0 312 1 3389 235 51 52 chr3 55801015 55801326 -162235832 - L1M LINE L1 -1012 5134 4824 1772 143 34 0 chr3 55801326 55801592 -162235566 - AluJb SINE Alu -11 301 27 3389 235 51 52 chr3 55801592 55802550 -162234608 - L1M LINE L1 -1322 4824 3889 481 156 46 184 chr3 55802539 55802757 -162234401 - L1MC/D LINE L1 -1987 5798 5611 * 247 238 79 63 chr3 55802757 55802883 -162234275 + MER52A LTR ERV1 1 128 -1627 7573 201 68 29 chr3 55803153 55804789 -162232369 + MER52A LTR ERV1 56 1755 0 4565 200 36 48 chr3 55804790 55806095 -162231063 - L1MC/D LINE L1 -743 5403 4336 2096 117 10 3 chr3 55806095 55806395 -162230763 - AluSx SINE Alu -10 302 1 4565 200 36 48 chr3 55806395 55806722 -162230436 - L1MC/D LINE L1 -1810 4336 4007 614 211 8 0 chr3 55806728 55806851 -162230307 - L1PB4 LINE L1 -12 6144 6021 2310 170 62 34 chr3 55806853 55807082 -162230076 + LOR1b LTR ERV1 1 222 -239 2179 109 3 0 chr3 55807082 55807376 -162229782 - AluSg SINE Alu -15 295 1 2310 170 62 34 chr3 55807376 55807594 -162229564 + LOR1b LTR ERV1 222 461 0 30831 119 47 44 chr3 55807594 55810143 -162227015 + LOR1b-int LTR ERV1 1 2541 -5579 2060 128 34 0 chr3 55810143 55810441 -162226717 - AluSx SINE Alu -4 308 1 30831 119 47 44 chr3 55810441 55813398 -162223760 + LOR1b-int LTR ERV1 2541 5524 -2596 1821 107 37 4 chr3 55813378 55813650 -162223508 + LOR1b-int LTR ERV1 5782 6062 -2058 * 742 65 0 0 chr3 55813650 55813742 -162223416 + LOR1b-int LTR ERV1 8029 8120 0 2558 189 29 2 chr3 55813742 55814191 -162222967 + LOR1b LTR ERV1 1 461 0 4466 214 26 28 chr3 55814199 55815282 -162221876 + L1 LINE L1 2889 3971 -2175 2142 132 3 3 chr3 55815282 55815593 -162221565 + AluSx SINE Alu 1 311 -1 4466 214 26 28 chr3 55815593 55815720 -162221438 + L1 LINE L1 3971 4097 -2049 851 145 0 0 chr3 55815724 55815841 -162221317 + FLAM_C SINE Alu 1 117 -26 405 0 0 0 chr3 55815841 55815886 -162221272 + (CA)n Simple_repeat Simple_repeat 2 46 0 402 219 55 31 chr3 55815886 55816014 -162221144 + L1 LINE L1 4086 4216 -1930 * 1324 157 16 51 chr3 55816007 55816107 -162221051 - L1M3 LINE L1 -648 5532 5430 2149 125 30 0 chr3 55816107 55816410 -162220748 - AluSx SINE Alu 0 312 1 1324 157 16 51 chr3 55816410 55816643 -162220515 - L1M3 LINE L1 -750 5430 5201 * 3243 187 28 24 chr3 55816641 55817261 -162219897 + L1PB4 LINE L1 3149 3765 -2391 1707 126 115 0 chr3 55817261 55817530 -162219628 + AluSg1 SINE Alu 1 300 -9 3243 187 28 24 chr3 55817530 55818276 -162218882 + L1PB4 LINE L1 3765 5930 -226 2278 167 40 15 chr3 55818298 55818700 -162218458 - LTR3 LTR ERVK -16 416 5 49806 114 13 6 chr3 55818704 55823867 -162213291 - HERVK3 LTR ERVK 0 7243 2015 2477 85 0 0 chr3 55823867 55824172 -162212986 + AluY SINE Alu 1 305 -6 49806 114 13 6 chr3 55824172 55826161 -162210997 - HERVK3 LTR ERVK -5228 2015 41 2327 144 47 25 chr3 55826184 55826587 -162210571 - LTR3 LTR ERVK -16 416 5 320 260 21 0 chr3 55826591 55826687 -162210471 + L1PB4 LINE L1 5925 6022 -134 1809 141 0 4 chr3 55826690 55826960 -162210198 - LOR1b LTR ERV1 0 461 193 3246 159 46 17 chr3 55827214 55827818 -162209340 + LTR26E LTR ERV1 1 622 0 351 320 29 17 chr3 55827942 55828114 -162209044 - MIR SINE MIR -60 202 29 1024 107 0 0 chr3 55828328 55828459 -162208699 - AluSq/x SINE Alu -181 131 1 1890 238 25 62 chr3 55828552 55828585 -162208573 + L1ME1 LINE L1 5551 5584 -582 2003 138 0 44 chr3 55828585 55828904 -162208254 - AluJb SINE Alu -7 305 1 1890 238 25 62 chr3 55828904 55829244 -162207914 + L1ME1 LINE L1 5584 5894 -272 523 276 8 15 chr3 55829244 55829378 -162207780 - FLAM_A SINE Alu 0 133 1 1890 238 25 62 chr3 55829378 55829630 -162207528 + L1ME1 LINE L1 5894 6154 -12 1102 196 57 112 chr3 55829630 55829989 -162207169 + MLT2C1 LTR ERVL 1 335 -62 861 89 20 0 chr3 55829989 55830135 -162207023 + (TCTA)n Simple_repeat Simple_repeat 2 150 0 1102 196 57 112 chr3 55830135 55830193 -162206965 + MLT2C1 LTR ERVL 335 395 -2 255 183 0 33 chr3 55830196 55830256 -162206902 + ERVL-C1 LTR ERVL 2 59 -5705 1810 241 34 46 chr3 55830330 55830681 -162206477 + ERVL-C1 LTR ERVL 199 544 -5220 1801 144 3 58 chr3 55830681 55830993 -162206165 - AluJb SINE Alu -17 295 1 1810 241 34 46 chr3 55830993 55831142 -162206016 + ERVL-C1 LTR ERVL 544 693 -5071 2184 213 10 2 chr3 55831149 55831566 -162205592 + ERVL LTR ERVL 3436 3855 -1909 8836 162 36 46 chr3 55831983 55833672 -162203486 - ERVL LTR ERVL -74 5690 4019 968 285 78 43 chr3 55834402 55834798 -162202360 + LTR16B LTR ERVL 34 443 -21 565 175 265 0 chr3 55835014 55835180 -162201978 - MER63A DNA MER1_type 0 210 1 1492 261 61 30 chr3 55835254 55835729 -162201429 - LTR33 LTR ERVL -2 519 30 1772 175 0 10 chr3 55836010 55836301 -162200857 - AluJo SINE Alu -24 288 1 207 233 0 0 chr3 55836330 55836373 -162200785 - MIR SINE MIR -3 259 217 479 250 21 35 chr3 55836378 55836522 -162200636 + L2 LINE L2 3172 3313 0 1653 233 99 39 chr3 55836565 55836938 -162200220 + MLT1H1 LTR MaLR 3 467 -126 2336 103 3 0 chr3 55836938 55837250 -162199908 + AluSp SINE Alu 1 313 0 1653 233 99 39 chr3 55837250 55837384 -162199774 + MLT1H1 LTR MaLR 467 591 -2 267 157 0 0 chr3 55838309 55838360 -162198798 + CT-rich Low_complexity Low_complexity 4 54 0 2237 115 13 0 chr3 55838366 55838671 -162198487 - AluSc SINE Alu 0 309 1 318 235 12 12 chr3 55838731 55838812 -162198346 + MER5A DNA MER1_type 65 145 -44 430 309 135 0 chr3 55838848 55839026 -162198132 + MIR SINE MIR 12 213 -49 216 313 75 38 chr3 55839285 55839445 -162197713 - L2 LINE L2 -131 3141 2976 184 338 50 22 chr3 55839848 55839987 -162197171 - L2 LINE L2 -212 3060 2918 277 163 20 0 chr3 55840170 55840219 -162196939 - MLT1L LTR MaLR -9 606 557 286 271 0 65 chr3 55840278 55840386 -162196772 - MLT1L LTR MaLR -175 391 237 360 202 266 0 chr3 55840401 55840495 -162196663 + MER20 DNA MER1_type 1 119 -100 222 37 0 0 chr3 55840909 55840936 -162196222 + (TG)n Simple_repeat Simple_repeat 1 27 0 1469 213 48 20 chr3 55841081 55841578 -162195580 + L1MC/D LINE L1 2840 3350 -2796 1349 129 34 34 chr3 55841585 55841818 -162195340 - Tigger2a DNA MER2_type 0 444 212 4930 194 35 10 chr3 55841824 55843163 -162193995 - L1PB4 LINE L1 -2890 3958 2584 9901 162 19 40 chr3 55843164 55844364 -162192794 + L1PB4 LINE L1 3958 5182 -1676 1724 163 53 13 chr3 55844364 55844664 -162192494 + AluJb SINE Alu 1 312 0 9901 162 19 40 chr3 55844664 55845441 -162191717 + L1PB4 LINE L1 5182 5868 -990 1882 153 37 3 chr3 55845441 55845735 -162191423 + AluSx SINE Alu 2 305 -7 9901 162 19 40 chr3 55845735 55846280 -162190878 + L1PB4 LINE L1 5868 6423 -435 302 95 349 16 chr3 55846277 55846340 -162190818 + L1MA4 LINE L1 5783 5866 -434 * 767 137 0 8 chr3 55846340 55846457 -162190701 - AluJb SINE Alu -2 310 195 1753 150 14 7 chr3 55846458 55846738 -162190420 + L1PB4 LINE L1 6562 6843 -15 1282 145 4 48 chr3 55846738 55846965 -162190193 - Tigger2a DNA MER2_type -217 217 1 579 311 22 4 chr3 55846965 55847190 -162189968 + L1MC/D LINE L1 3349 3577 -2569 * 2159 205 36 64 chr3 55847176 55848156 -162189002 + L1MC/D LINE L1 4672 5618 -624 308 106 21 0 chr3 55848156 55848203 -162188955 - MLT2B3 LTR ERVL 0 554 507 236 118 12 188 chr3 55848207 55848292 -162188866 - MER5B DNA MER1_type -108 70 1 223 180 20 20 chr3 55848561 55848611 -162188547 + MIR SINE MIR 97 146 -116 1074 198 36 122 chr3 55849061 55849276 -162187882 + LTR56 LTR ERV1 10 242 -195 3234 123 61 20 chr3 55849276 55849782 -162187376 + MER1A DNA MER1_type 1 527 0 1074 198 36 122 chr3 55849782 55849909 -162187249 + LTR56 LTR ERV1 242 266 -171 2178 115 0 3 chr3 55849909 55850221 -162186937 + L1PA16 LINE L1 5847 6157 -9 1074 198 36 122 chr3 55850221 55850375 -162186783 + LTR56 LTR ERV1 266 432 -5 496 145 0 0 chr3 55852259 55852335 -162184823 + AluJ/FRAM SINE Alu 230 305 -7 1175 147 0 0 chr3 55852540 55852710 -162184448 + AluSg/x SINE Alu 132 301 -9 425 336 56 42 chr3 55853077 55853526 -162183632 + LTR56-int LTR ERV1 2105 2559 -2088 1465 174 8 0 chr3 55853823 55854081 -162183077 - L1PA16 LINE L1 0 6166 5907 269 272 0 39 chr3 55854126 55854229 -162182929 + LTR56-int LTR ERV1 2756 2854 -1793 198 103 0 0 chr3 55854528 55854557 -162182601 + (CA)n Simple_repeat Simple_repeat 2 30 0 1847 183 3 0 chr3 55854606 55854917 -162182241 - AluJo SINE Alu 0 312 1 268 360 25 25 chr3 55854957 55855118 -162182040 + MER70-int LTR ERVL 3641 3801 -1222 450 220 43 127 chr3 55855972 55856376 -162180782 + LTR56-int LTR ERV1 4644 5919 -85 1274 164 66 114 chr3 55856451 55856777 -162180381 + LTR56 LTR ERV1 12 311 -134 1963 142 0 7 chr3 55856777 55857086 -162180072 + L1PA16 LINE L1 5850 6156 -10 1274 164 66 114 chr3 55857086 55857215 -162179943 + LTR56 LTR ERV1 311 445 0 26 0 0 0 chr3 55857329 55857355 -162179803 + AT_rich Low_complexity Low_complexity 1 26 0 426 229 9 9 chr3 55857398 55857503 -162179655 - MIR SINE MIR -97 165 61 360 138 126 0 chr3 55857924 55858011 -162179147 + MER5A DNA MER1_type 15 112 -77 344 267 52 0 chr3 55858088 55858204 -162178954 + LTR16A1 LTR ERVL 3 124 -333 450 263 40 0 chr3 55858212 55858364 -162178794 + MER5B DNA MER1_type 20 177 -1 711 232 105 54 chr3 55858369 55858684 -162178474 + LTR16A1 LTR ERVL 127 457 0 229 274 147 0 chr3 55859219 55859314 -162177844 - MIR SINE MIR 0 262 154 544 211 56 93 chr3 55859328 55859489 -162177669 - MLT1H1 LTR MaLR 0 555 422 493 226 51 17 chr3 55859597 55859759 -162177399 - MLT1H LTR MaLR -371 178 25 276 333 0 0 chr3 55859799 55859877 -162177281 - MIR SINE MIR -179 83 6 800 199 25 10 chr3 55860249 55860450 -162176708 + MER33 DNA MER1_type 52 255 -69 887 175 7 0 chr3 55860458 55860601 -162176557 - FRAM SINE Alu -37 139 1 366 174 0 82 chr3 55860601 55860640 -162176518 + MER33 DNA MER1_type 274 315 -2309 2286 87 0 23 chr3 55860640 55860939 -162176219 - AluSg SINE Alu -18 292 1 366 174 0 82 chr3 55860939 55860997 -162176161 + MER33 DNA MER1_type 315 363 0 216 298 26 18 chr3 55862073 55862197 -162174961 + MIR SINE MIR 30 152 -63 671 160 69 8 chr3 55862197 55862328 -162174830 - MLT1F LTR MaLR -2 540 402 666 238 26 0 chr3 55862334 55862485 -162174673 - MLT1F LTR MaLR -308 234 80 453 182 23 0 chr3 55862768 55862856 -162174302 - MLT1F LTR MaLR -505 90 1 339 270 69 38 chr3 55862959 55863118 -162174040 - MIR3 SINE MIR -21 187 24 275 169 48 133 chr3 55863163 55863246 -162173912 + MLT1L LTR MaLR 39 114 -501 386 232 64 24 chr3 55863371 55863496 -162173662 + MLT1L LTR MaLR 476 605 -10 1271 186 137 55 chr3 55863951 55864317 -162172841 - MSTD LTR MaLR 0 396 1 594 287 76 81 chr3 55866949 55867212 -162169946 + MLT1K LTR MaLR 144 406 -182 1407 181 55 79 chr3 55867212 55867593 -162169565 + MLT1A2 LTR MaLR 1 372 -2 594 287 76 81 chr3 55867593 55867737 -162169421 + MLT1K LTR MaLR 406 549 -39 2270 90 30 0 chr3 55867737 55868038 -162169120 - AluY SINE Alu -1 310 1 594 133 0 53 chr3 55868831 55868944 -162168214 - L1PA16 LINE L1 -1 6165 6059 296 322 158 0 chr3 55869030 55869176 -162167982 + MER5A DNA MER1_type 14 182 -7 266 151 75 0 chr3 55869180 55869233 -162167925 + MLT1J LTR MaLR 445 501 -10 236 244 22 78 chr3 55870251 55870341 -162166817 - MER5A DNA MER1_type -97 92 8 531 259 60 106 chr3 55871179 55871205 -162165953 - HAL1 LINE L1 -991 1516 1490 1829 134 22 0 chr3 55871205 55871474 -162165684 - AluSq SINE Alu -3 310 36 531 259 60 106 chr3 55871474 55871974 -162165184 - HAL1 LINE L1 -1017 1490 1025 2108 89 11 0 chr3 55871974 55872244 -162164914 - AluSc SINE Alu -7 302 30 531 259 60 106 chr3 55872244 55872383 -162164775 - HAL1 LINE L1 -1482 1025 881 883 124 69 0 chr3 55872672 55872817 -162164341 + L1PB1 LINE L1 5994 6148 -3 404 273 19 54 chr3 55873747 55873952 -162163206 + MIR3 SINE MIR 3 200 -8 1004 266 116 20 chr3 55874279 55874486 -162162672 - MLT1G LTR MaLR 0 595 409 541 0 29 0 chr3 55874486 55874555 -162162603 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 1004 266 116 20 chr3 55874555 55874836 -162162322 - MLT1G LTR MaLR -186 409 3 253 269 99 36 chr3 55875036 55875197 -162161961 + MIR SINE MIR 24 192 -70 2213 97 23 19 chr3 55875469 55875778 -162161380 - AluSg SINE Alu 0 310 1 2270 85 0 3 chr3 55876106 55876440 -162160718 - AluY SINE Alu 0 333 1 325 246 12 0 chr3 55877754 55877925 -162159233 + (TG)n Simple_repeat Simple_repeat 2 174 0 483 227 97 19 chr3 55877987 55878141 -162159017 + L1ME4a LINE L1 5494 5659 -462 791 218 125 14 chr3 55878242 55878458 -162158700 - MIR SINE MIR -21 241 2 249 261 126 0 chr3 55878531 55878642 -162158516 + L1ME4a LINE L1 5872 5996 -125 292 151 0 0 chr3 55878666 55878719 -162158439 - L1MB8 LINE L1 -6 6172 6120 1876 146 12 51 chr3 55878720 55879055 -162158103 - Tigger1 DNA MER2_type 0 2418 2097 1040 206 9 9 chr3 55879046 55879260 -162157898 + Tigger1 DNA MER2_type 1893 2106 -312 * 1555 105 14 0 chr3 55879289 55879498 -162157660 + AluJb SINE Alu 86 297 -15 1853 213 148 18 chr3 55880431 55881059 -162156099 + MER67C LTR ERV1 1 710 0 816 252 169 28 chr3 55882679 55883145 -162154013 + MLT1H LTR MaLR 3 548 -1 1699 322 47 50 chr3 55883815 55885042 -162152116 - BaEV-int LTR ERV1 -138 6511 5290 2357 334 43 27 chr3 55885758 55887361 -162149797 - BaEV-int LTR ERV1 -2029 5756 4128 1976 324 39 31 chr3 55887403 55888695 -162148463 - BaEV-int LTR ERV1 -3673 4112 1009 1009 338 34 19 chr3 55888691 55889375 -162147783 - BaEV-int LTR ERV1 -4990 1659 966 * 578 232 88 10 chr3 55889999 55890193 -162146965 - BaEV-int LTR ERV1 -6279 370 162 315 239 14 87 chr3 55890808 55890946 -162146212 - L1M4 LINE L1 -1089 5057 4930 397 223 100 8 chr3 55890982 55891112 -162146046 - L1ME4a LINE L1 -14 6107 5966 763 279 101 14 chr3 55891113 55891479 -162145679 - L1ME4a LINE L1 -187 5934 5537 193 311 67 34 chr3 55892023 55892142 -162145016 - L2 LINE L2 -191 3081 2959 988 270 85 75 chr3 55892304 55892808 -162144350 + L2 LINE L2 2805 3313 0 283 277 76 58 chr3 55893044 55893268 -162143890 - L2 LINE L2 -816 2498 2271 3320 204 78 31 chr3 55893680 55893904 -162143254 - L1MD2 LINE L1 -15 6344 6132 1568 159 4 12 chr3 55893904 55894149 -162143009 - AluJo SINE Alu -21 291 49 3320 204 78 31 chr3 55894149 55894927 -162142231 - L1MD2 LINE L1 -227 6132 5239 3087 80 68 2 chr3 55894927 55895310 -162141848 + MLT2A2 LTR ERVL 1 416 -37 206 32 32 0 chr3 55895310 55895341 -162141817 + (TA)n Simple_repeat Simple_repeat 1 32 0 3087 80 68 2 chr3 55895341 55895382 -162141776 + MLT2A2 LTR ERVL 416 453 0 3320 204 78 31 chr3 55895382 55895426 -162141732 - L1MD2 LINE L1 -1120 5239 5199 422 182 109 18 chr3 55895426 55895536 -162141622 - L1M4 LINE L1 -1185 4961 4842 285 125 0 0 chr3 55895536 55895584 -162141574 - HSMAR2 DNA Mariner -1 1301 1254 1617 122 13 0 chr3 55895586 55895810 -162141348 - HSMAR2 DNA Mariner -191 1111 885 2745 168 71 14 chr3 55895810 55896450 -162140708 + MER50 LTR ERV1 1 734 0 * 2750 85 57 8 chr3 55896450 55896829 -162140329 - HSMAR2 DNA Mariner -414 888 491 347 205 128 120 chr3 55896833 55897136 -162140022 - LTR49 LTR ERV1 -286 309 23 * 360 137 0 0 chr3 55897107 55897158 -162140000 - MER39 LTR ERV1 -656 51 1 1148 169 105 56 chr3 55897160 55897426 -162139732 + MER31-int LTR ERV1 3783 4061 -875 364 135 0 0 chr3 55897430 55897488 -162139670 - Alu SINE Alu -250 52 2 1039 147 47 39 chr3 55897489 55897721 -162139437 - L1MDa LINE L1 -5263 1277 1044 * 8195 204 48 17 chr3 55897712 55899519 -162137639 + L1MB3 LINE L1 3000 4876 -1270 1685 185 63 44 chr3 55899519 55899902 -162137256 + MLT1B LTR MaLR 1 390 0 8195 204 48 17 chr3 55899902 55900083 -162137075 + L1MB3 LINE L1 4876 5050 -1096 2236 108 0 10 chr3 55900086 55900400 -162136758 + AluY SINE Alu 1 311 0 5203 134 26 8 chr3 55900400 55900590 -162136568 + L1MB3 LINE L1 5295 5480 -703 318 50 0 0 chr3 55900590 55900630 -162136528 + (CA)n Simple_repeat Simple_repeat 2 41 0 5203 134 26 8 chr3 55900630 55901280 -162135878 + L1MB3 LINE L1 5480 6153 -30 243 0 0 0 chr3 55901280 55901307 -162135851 + (TA)n Simple_repeat Simple_repeat 2 28 0 324 133 0 33 chr3 55901319 55901379 -162135779 - L1MDa LINE L1 -5481 1059 1002 211 313 50 0 chr3 55902022 55902121 -162135037 - MIR SINE MIR -128 134 31 203 286 83 0 chr3 55902322 55902406 -162134752 - L2 LINE L2 -46 3226 3136 1170 199 80 84 chr3 55903191 55903643 -162133515 + L1MC4 LINE L1 7586 8035 -7 584 224 135 91 chr3 55904797 55905213 -162131945 + MLT1G1 LTR MaLR 89 522 -27 448 278 68 17 chr3 55905429 55905605 -162131553 - MIR3 SINE MIR -8 200 16 242 295 42 11 chr3 55905721 55905816 -162131342 - MIR SINE MIR -118 144 47 442 219 21 0 chr3 55907209 55907305 -162129853 - Charlie8 DNA MER1_type -2236 181 84 279 320 69 46 chr3 55907523 55908052 -162129106 + L2 LINE L2 2538 3077 -195 1034 156 4 61 chr3 55908059 55908290 -162128868 - L1MB7 LINE L1 0 6184 5967 2543 206 44 51 chr3 55908421 55909464 -162127694 - L1MDa LINE L1 -3264 3276 2235 2585 56 0 31 chr3 55909464 55909785 -162127373 - AluY SINE Alu 0 311 1 2543 206 44 51 chr3 55909785 55909935 -162127223 - L1MDa LINE L1 -4305 2235 2085 231 174 0 0 chr3 55909935 55909981 -162127177 + LTR66 LTR ERVL 394 439 -171 231 218 0 0 chr3 55909996 55910051 -162127107 - L1MC4 LINE L1 -1340 6702 6648 1022 84 8 0 chr3 55910174 55910305 -162126853 - AluSg SINE Alu -178 132 1 244 263 121 0 chr3 55911037 55911136 -162126022 + MIR SINE MIR 39 149 -113 438 144 124 31 chr3 55911339 55911436 -162125722 + MER103 DNA DNA 13 118 -48 2002 132 11 0 chr3 55912009 55912289 -162124869 - AluSx SINE Alu -25 287 5 1051 246 51 81 chr3 55912404 55912871 -162124287 + L1MDa LINE L1 18 470 -6070 265 179 55 64 chr3 55913555 55913671 -162123487 + L1MDa LINE L1 582 850 -5690 1275 130 10 0 chr3 55913724 55914033 -162123125 + (GAA)n Simple_repeat Simple_repeat 1 313 0 2746 208 106 31 chr3 55914033 55914153 -162123005 + L1MDa LINE L1 1003 1113 -5427 2576 11 0 0 chr3 55914153 55914430 -162122728 + AluYa5 SINE Alu 34 310 -1 2746 208 106 31 chr3 55914430 55915211 -162121947 + L1MDa LINE L1 1113 1972 -4568 316 304 46 44 chr3 55915353 55915566 -162121592 + MIR SINE MIR 17 227 -35 2242 97 10 13 chr3 55915799 55916109 -162121049 - AluSc SINE Alu 0 309 1 1358 203 51 25 chr3 55916377 55916692 -162120466 + L1MA10 LINE L1 6011 6333 -1 229 231 19 0 chr3 55917390 55917442 -162119716 - LTR16B LTR ERVL -276 188 136 374 171 14 0 chr3 55917722 55917792 -162119366 - AluS SINE Alu -5 296 226 2398 185 92 2 chr3 55917907 55918567 -162118591 - L1M4 LINE L1 -418 5766 5064 232 328 107 33 chr3 55918994 55919116 -162118042 - L2 LINE L2 -15 3257 3127 449 291 6 28 chr3 55919118 55919300 -162117858 + (CATA)n Simple_repeat Simple_repeat 1 178 0 * 468 308 0 27 chr3 55919168 55919353 -162117805 + (CA)n Simple_repeat Simple_repeat 1 180 0 252 298 0 46 chr3 55919325 55919456 -162117702 + (CATA)n Simple_repeat Simple_repeat 1 125 0 * 232 250 16 0 chr3 55919465 55919593 -162117565 + (CA)n Simple_repeat Simple_repeat 1 130 0 245 264 129 29 chr3 55919650 55919790 -162117368 - MIR SINE MIR 0 262 109 290 167 50 0 chr3 55919901 55919961 -162117197 + Charlie7 DNA MER1_type 38 100 -2512 267 31 0 0 chr3 55920132 55920164 -162116994 + (CA)n Simple_repeat Simple_repeat 2 33 0 1918 130 0 0 chr3 55921685 55921981 -162115177 + AluSx SINE Alu 21 316 0 211 208 0 39 chr3 55922579 55922656 -162114502 + (TGAA)n Simple_repeat Simple_repeat 3 76 0 614 219 62 7 chr3 55923641 55923787 -162113371 - MIR SINE MIR -27 235 82 23 33 0 0 chr3 55923928 55923958 -162113200 + AT_rich Low_complexity Low_complexity 1 30 0 608 234 101 40 chr3 55924064 55924342 -162112816 + L1ME LINE L1 5259 5553 -568 524 266 89 16 chr3 55924740 55925068 -162112090 + L1ME LINE L1 5485 5884 -237 2326 224 109 0 chr3 55925193 55925715 -162111443 + MER119 DNA MER1_type 5 583 0 556 273 83 87 chr3 55925718 55926330 -162110828 - MLT2F LTR ERVL -53 610 1 1689 149 14 21 chr3 55926397 55926679 -162110479 - AluJo SINE Alu -22 290 11 257 307 10 20 chr3 55926735 55926836 -162110322 + GA-rich Low_complexity Low_complexity 2 101 0 200 217 67 50 chr3 55927139 55927199 -162109959 + MIR SINE MIR 90 150 -58 234 231 39 0 chr3 55927419 55927471 -162109687 + AluSp SINE Alu 117 170 -133 1606 147 0 0 chr3 55927478 55927709 -162109449 + AluJb SINE Alu 67 297 -15 819 256 72 0 chr3 55928365 55928560 -162108598 - MER63A DNA MER1_type -1 209 1 1480 219 42 3 chr3 55928635 55928996 -162108162 + L1MB7 LINE L1 4931 5305 -841 1777 103 4 19 chr3 55929008 55929269 -162107889 + L1PA15 LINE L1 5909 6165 0 1015 171 76 32 chr3 55929274 55929525 -162107633 + L1MA7 LINE L1 6026 6287 -4 * 3217 209 41 23 chr3 55929520 55929943 -162107215 + L1MB7 LINE L1 5291 5734 -450 1913 148 57 33 chr3 55929943 55930309 -162106849 + THE1C LTR MaLR 1 375 0 3217 209 41 23 chr3 55930309 55930621 -162106537 + L1MB7 LINE L1 5734 6039 -145 216 97 0 0 chr3 55930621 55930652 -162106506 + (T)n Simple_repeat Simple_repeat 1 31 0 736 229 93 90 chr3 55930802 55931112 -162106046 + L1MEc LINE L1 683 965 -5105 413 217 0 0 chr3 55931139 55931208 -162105950 - Tigger7 DNA MER2_type -10 2477 2409 2332 182 30 2 chr3 55931227 55931623 -162105535 - Tigger7 DNA MER2_type -326 407 1 2469 274 111 34 chr3 55931669 55932689 -162104469 + L1MEc LINE L1 1089 2029 -4051 8037 122 29 17 chr3 55932689 55933906 -162103252 + Tigger3b DNA MER2_type 1 1231 0 2469 274 111 34 chr3 55933906 55934785 -162102373 + L1MEc LINE L1 2029 3096 -2984 1863 261 113 11 chr3 55935070 55935161 -162101997 + L1MC4 LINE L1 6458 6538 -1504 2203 113 0 0 chr3 55935161 55935454 -162101704 + AluSg SINE Alu 1 293 -17 1863 261 113 11 chr3 55935454 55935547 -162101611 + L1MC4 LINE L1 6538 6620 -1422 194 0 39 0 chr3 55935547 55935573 -162101585 + (TG)n Simple_repeat Simple_repeat 2 28 0 1863 261 113 11 chr3 55935573 55936007 -162101151 + L1MC4 LINE L1 6620 7140 -902 1930 207 85 96 chr3 55936008 55936747 -162100411 + L1MC4 LINE L1 7296 8026 -16 340 281 0 0 chr3 55936929 55937011 -162100147 - MIR SINE MIR -71 191 110 8216 20 0 0 chr3 55937151 55938213 -162098945 - L1PA3 LINE L1 -11 6144 5082 252 0 0 0 chr3 55939440 55939468 -162097690 + (A)n Simple_repeat Simple_repeat 1 28 0 365 276 26 69 chr3 55941870 55942102 -162095056 + L3 LINE CR1 682 903 -674 285 287 21 21 chr3 55942549 55942643 -162094515 + L3 LINE CR1 1422 1515 -62 296 218 61 97 chr3 55942838 55943003 -162094155 + L1ME4a LINE L1 5963 6121 0 276 260 0 102 chr3 55943877 55944004 -162093154 + L1ME4a LINE L1 5950 6063 -58 27 0 0 0 chr3 55944270 55944297 -162092861 + AT_rich Low_complexity Low_complexity 1 27 0 299 288 110 34 chr3 55946477 55946595 -162090563 - L2 LINE L2 -1 3271 3145 409 279 47 29 chr3 55946766 55946938 -162090220 - MIR SINE MIR -86 176 2 411 191 138 53 chr3 55947055 55947207 -162089951 + MER20 DNA MER1_type 5 169 -50 266 254 37 90 chr3 55947226 55947360 -162089798 - MIR3 SINE MIR -42 166 40 435 275 55 0 chr3 55947675 55947784 -162089374 + MIR SINE MIR 68 182 -80 1032 215 67 5 chr3 55949033 55949228 -162087930 - MER63A DNA MER1_type -3 207 1 2215 96 10 0 chr3 55949702 55949993 -162087165 - AluSc SINE Alu -15 294 1 399 296 140 11 chr3 55951103 55951289 -162085869 + MIR SINE MIR 52 261 -1 281 316 25 0 chr3 55951414 55951493 -162085665 + MIR3 SINE MIR 85 165 -43 471 291 43 0 chr3 55951739 55951880 -162085278 - L2 LINE L2 -5 3308 3162 872 217 17 11 chr3 55951978 55952158 -162085000 + MER5A DNA MER1_type 1 181 -8 261 230 54 0 chr3 55954064 55954138 -162083020 + L2 LINE L2 623 700 -2614 226 269 51 26 chr3 55954152 55954230 -162082928 - MLT1H LTR MaLR -15 534 455 646 288 79 30 chr3 55954261 55954528 -162082630 - MLT1H LTR MaLR -214 335 56 2940 259 80 11 chr3 55954583 55955487 -162081671 + L2 LINE L2 698 1663 -1651 322 203 116 0 chr3 55955488 55955557 -162081601 - MLT1L LTR MaLR -118 497 421 694 227 153 0 chr3 55956320 55956483 -162080675 + MER5A DNA MER1_type 2 189 0 356 256 198 8 chr3 55956513 55956634 -162080524 + MER5A DNA MER1_type 46 189 0 616 298 29 19 chr3 55957011 55957219 -162079939 + L1MC/D LINE L1 5495 5704 -2104 4812 158 72 12 chr3 55957376 55959049 -162078109 + L1PB1 LINE L1 2146 3920 -2942 219 200 153 71 chr3 55959310 55959395 -162077763 - L2 LINE L2 -2 3270 3179 802 153 31 71 chr3 55960052 55960248 -162076910 + MER3 DNA MER1_type 1 188 -21 1450 241 58 15 chr3 55960531 55960930 -162076228 - LTR16C LTR ERVL -3 488 73 1223 202 28 0 chr3 55961439 55961657 -162075501 + MER58A DNA MER1_type 1 224 0 10303 176 5 13 chr3 55962429 55965396 -162071762 + L1PB1 LINE L1 3929 6867 0 587 172 25 98 chr3 55965477 55965640 -162071518 - MER63 DNA MER1_type -59 777 1 346 281 25 56 chr3 55967050 55967210 -162069948 + MIR SINE MIR 60 214 -48 1913 120 45 0 chr3 55967445 55967712 -162069446 + AluSg SINE Alu 1 279 -31 186 43 0 0 chr3 55967715 55967738 -162069420 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 219 340 31 67 chr3 55967750 55967944 -162069214 + L2 LINE L2 3081 3267 -5 181 206 16 32 chr3 55967953 55968016 -162069142 + (TATG)n Simple_repeat Simple_repeat 1 62 0 638 250 0 88 chr3 55968407 55968667 -162068491 + L1M3 LINE L1 5258 5494 -686 1029 90 0 41 chr3 55968688 55968829 -162068329 + AluSq/x SINE Alu 1 136 -173 2318 97 10 0 chr3 55968829 55969129 -162068029 + AluSx SINE Alu 1 303 -9 1408 253 196 13 chr3 55969162 55969683 -162067475 + L1ME2 LINE L1 5485 6100 -64 316 120 0 20 chr3 55969751 55969801 -162067357 + AluSp SINE Alu 131 179 -124 2035 175 20 0 chr3 55969810 55970207 -162066951 - L1MC/D LINE L1 -725 5634 5229 3782 204 70 32 chr3 55970208 55971229 -162065929 - L1MC/D LINE L1 -1151 4995 3937 1927 120 0 45 chr3 55971248 55971557 -162065601 - AluSx SINE Alu -17 295 1 1890 231 55 61 chr3 55971624 55972347 -162064811 - L1MC/D LINE L1 -2757 3389 2671 434 294 128 11 chr3 55973238 55973425 -162063733 + MIR SINE MIR 17 225 -37 734 273 127 33 chr3 55973636 55973999 -162063159 + MLT1J1 LTR MaLR 50 446 0 590 280 37 37 chr3 55974106 55974324 -162062834 + L1ME1 LINE L1 5943 6160 -6 371 309 23 55 chr3 55974390 55974610 -162062548 - LTR16A1 LTR ERVL -31 426 214 1968 202 117 24 chr3 55975236 55975696 -162061462 - MLT1D LTR MaLR 0 505 3 1557 145 61 34 chr3 55976926 55977025 -162060133 + L1MA9 LINE L1 6003 6098 -214 2433 130 3 9 chr3 55977025 55977363 -162059795 - MER1B DNA MER1_type -1 336 1 1557 145 61 34 chr3 55977363 55977559 -162059599 + L1MA9 LINE L1 6098 6306 -6 2036 156 46 3 chr3 55977564 55977930 -162059228 + L1MC3 LINE L1 7195 7576 -209 * 31644 32 5 3 chr3 55977928 55982561 -162054597 + L1PA3 LINE L1 1697 6154 -1 234 0 0 0 chr3 55982561 55982587 -162054571 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2281 68 0 0 chr3 55982590 55982868 -162054290 - AluY SINE Alu -24 287 10 318 272 37 0 chr3 55983276 55983357 -162053801 - L2 LINE L2 0 3313 3230 1841 137 22 53 chr3 55983545 55983866 -162053292 - AluSx SINE Alu -1 311 1 274 236 112 22 chr3 55984746 55984835 -162052323 + L2 LINE L2 3201 3297 -16 1383 212 25 93 chr3 55985334 55986151 -162051007 - L1MD2 LINE L1 -183 5983 4375 1695 148 8 4 chr3 55986165 55986428 -162050730 - L1MC1 LINE L1 0 6333 6070 493 50 0 0 chr3 55986428 55986488 -162050670 - L1P LINE L1 -4328 1818 1759 284 272 11 11 chr3 55986487 55986579 -162050579 - L1MC1 LINE L1 -258 6075 5984 * 8918 137 6 21 chr3 55986638 55988860 -162048298 - L1PA12 LINE L1 0 7606 5423 2041 140 0 3 chr3 55988862 55989155 -162048003 - AluSx SINE Alu -18 294 3 14317 217 31 19 chr3 55989158 55994115 -162043043 - L1PA12 LINE L1 -2264 5320 1 20266 177 14 11 chr3 55994131 55997888 -162039270 - L1PA13 LINE L1 -7 6807 3020 2184 99 7 3 chr3 55997888 55998190 -162038968 - AluY SINE Alu -8 303 1 20266 177 14 11 chr3 55998190 55999684 -162037474 - L1PA13 LINE L1 -3794 3020 1532 2620 246 46 11 chr3 56000641 56001588 -162035570 - L1 LINE L1 -1821 4325 3323 1336 169 102 28 chr3 56001606 56001861 -162035297 - AluJo SINE Alu -16 296 23 359 185 34 17 chr3 56001863 56001982 -162035176 - L1 LINE L1 -2905 3241 3121 4910 159 33 32 chr3 56001990 56003081 -162034077 - L1MA9 LINE L1 -4 6296 5133 251 111 0 89 chr3 56003081 56003126 -162034032 - Alu SINE Alu -15 285 245 4910 159 33 32 chr3 56003126 56003316 -162033842 - L1MA9 LINE L1 -1167 5133 4945 * 21326 84 5 20 chr3 56003307 56003954 -162033204 - L1P LINE L1 -2267 3879 3224 8079 30 1 0 chr3 56003954 56005385 -162031773 - L1PA4 LINE L1 -3 6152 4720 21326 84 5 20 chr3 56005385 56007799 -162029359 - L1P LINE L1 -2922 3224 865 1273 186 54 34 chr3 56007799 56007949 -162029209 - L1MA9 LINE L1 -2882 3264 3118 1666 191 3 19 chr3 56007949 56008258 -162028900 - AluJo SINE Alu -2 310 7 1273 186 54 34 chr3 56008258 56008456 -162028702 - L1MA9 LINE L1 -3028 3118 2909 266 265 102 20 chr3 56009191 56009289 -162027869 - MIR SINE MIR -40 222 117 4809 135 23 1 chr3 56009385 56010087 -162027071 + LTR62 LTR ERVK 1 717 -2 2260 104 12 0 chr3 56010762 56011090 -162026068 - L1MA4A LINE L1 -400 5903 5572 * 2739 179 36 9 chr3 56011083 56011641 -162025517 - L1MA4A LINE L1 -846 5300 4728 551 310 13 18 chr3 56011670 56011899 -162025259 - HsTC2 DNA Tc2 -1050 848 621 983 229 50 27 chr3 56011934 56012196 -162024962 - L1ME LINE L1 -574 5592 5325 1799 205 38 0 chr3 56012221 56012563 -162024595 - LTR42 LTR ERVL -140 355 1 1176 216 66 22 chr3 56012566 56012886 -162024272 + L1ME1 LINE L1 5826 6159 -7 296 320 107 10 chr3 56013373 56013476 -162023682 + MIR SINE MIR 22 134 -74 222 323 110 12 chr3 56014185 56014349 -162022809 + L2 LINE L2 2910 3089 -183 582 309 57 5 chr3 56014485 56014695 -162022463 - MIR SINE MIR -23 239 19 238 217 17 17 chr3 56014879 56014939 -162022219 + CT-rich Low_complexity Low_complexity 2 61 0 183 42 0 0 chr3 56014957 56014981 -162022177 + (TC)n Simple_repeat Simple_repeat 2 25 0 262 327 9 18 chr3 56015146 56015256 -162021902 - L2 LINE L2 -5 3308 3200 411 319 58 15 chr3 56015353 56015547 -162021611 - MIR SINE MIR -56 206 3 1930 143 0 0 chr3 56015667 56015939 -162021219 + AluSx SINE Alu 27 298 -14 252 41 0 82 chr3 56016734 56016783 -162020375 + LTR66 LTR ERVL 395 439 -171 292 286 10 10 chr3 56016783 56016825 -162020333 + (TA)n Simple_repeat Simple_repeat 2 43 -56 1201 204 81 57 chr3 56016825 56017159 -162019999 + MER2 DNA MER2_type 2 343 -1 292 286 10 10 chr3 56017159 56017214 -162019944 + (TA)n Simple_repeat Simple_repeat 42 99 0 738 294 91 37 chr3 56017554 56018149 -162019009 + L1ME4a LINE L1 5282 5908 -213 3935 33 5 7 chr3 56018162 56018611 -162018547 - LTR7 LTR ERV1 -2 448 1 248 270 245 0 chr3 56019028 56019187 -162017971 - L3 LINE CR1 -109 1468 1271 225 0 0 0 chr3 56019293 56019318 -162017840 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 3162 69 34 0 chr3 56019348 56019766 -162017392 - L1PA14 LINE L1 -1 6160 5729 492 304 90 15 chr3 56019766 56019956 -162017202 - L3 LINE CR1 -342 1235 1028 241 354 0 0 chr3 56019968 56020033 -162017125 - L2 LINE L2 -1 3271 3207 3749 49 0 7 chr3 56020065 56020516 -162016642 - LTR7 LTR ERV1 -2 448 1 2607 76 45 13 chr3 56020516 56020896 -162016262 - HERVH LTR ERV1 0 7713 7322 1460 113 18 9 chr3 56020894 56021115 -162016043 - HERVH LTR ERV1 -1894 5819 5597 * 4369 137 0 22 chr3 56021112 56021789 -162015369 - HERVH LTR ERV1 -2564 5149 4488 3448 117 0 6 chr3 56021791 56022296 -162014862 - HERVH LTR ERV1 -3720 3993 3492 904 135 20 0 chr3 56022286 56022434 -162014724 - HERVH LTR ERV1 -4423 3290 3140 * 21074 90 14 7 chr3 56022428 56025397 -162011761 - HERVH LTR ERV1 -4726 2987 1 3571 65 0 22 chr3 56025399 56025857 -162011301 - LTR7 LTR ERV1 -2 448 1 761 142 107 77 chr3 56025861 56025961 -162011197 - MER3 DNA MER1_type -28 181 73 2106 136 0 10 chr3 56025961 56026270 -162010888 - AluSx SINE Alu -6 306 1 761 142 107 77 chr3 56026270 56026338 -162010820 - MER3 DNA MER1_type -136 73 8 196 323 111 0 chr3 56026527 56026626 -162010532 - L3 LINE CR1 -550 1027 918 640 311 163 29 chr3 56026719 56026758 -162010400 - L3 LINE CR1 -11 1566 1534 734 251 41 0 chr3 56026758 56026929 -162010229 - MER5B DNA MER1_type 0 178 1 640 311 163 29 chr3 56026929 56027416 -162009742 - L3 LINE CR1 -43 1534 969 397 116 0 0 chr3 56027506 56027575 -162009583 - L1PA15 LINE L1 -4 6161 6093 391 265 120 0 chr3 56027592 56027709 -162009449 + L1MC4a LINE L1 5736 5866 -1942 618 190 82 19 chr3 56028097 56028255 -162008903 - MER95 LTR ERV 0 431 264 4543 153 8 5 chr3 56028291 56029903 -162007255 - L1PB1 LINE L1 -10 6141 4440 1238 167 18 4 chr3 56029903 56030131 -162007027 - MER95 LTR ERV -160 271 41 5632 148 27 72 chr3 56030132 56031290 -162005868 - Ricksha_c DNA DNA -2 2044 939 304 248 266 0 chr3 56031297 56031406 -162005752 - L2 LINE L2 -979 2335 2198 5347 141 92 1 chr3 56031419 56032279 -162004879 - Ricksha_c DNA DNA -1101 945 8 352 78 0 20 chr3 56032286 56032337 -162004821 - MER95 LTR ERV -381 50 1 515 266 102 62 chr3 56032337 56032660 -162004498 - MER41-int LTR ERV1 -490 7326 6991 260 235 15 0 chr3 56032809 56032877 -162004281 - MER41-int LTR ERV1 -941 3930 3862 * 534 236 16 8 chr3 56032855 56032978 -162004180 - MER41-int LTR ERV1 -441 5890 5767 1912 303 70 54 chr3 56032999 56033686 -162003472 - MER41-int LTR ERV1 -1602 3334 2637 2438 139 28 17 chr3 56033688 56034048 -162003110 - THE1B LTR MaLR 0 364 1 3201 71 2 0 chr3 56034048 56034444 -162002714 - THE1B-int LTR MaLR 0 1580 1184 498 205 43 133 chr3 56034575 56034865 -162002293 - MER41-int LTR ERV1 -2106 3840 2269 293 257 64 9 chr3 56034920 56035029 -162002129 + L1M4 LINE L1 4537 4651 -1495 1769 149 10 17 chr3 56036421 56036736 -162000422 - AluJb SINE Alu 0 312 13 193 318 124 0 chr3 56037458 56037587 -161999571 - MIR SINE MIR -57 205 61 191 375 10 48 chr3 56038328 56038432 -161998726 + MIR SINE MIR 44 143 -65 903 197 32 27 chr3 56040731 56040919 -161996239 - MER5A DNA MER1_type 0 189 1 323 382 48 51 chr3 56041426 56041800 -161995358 - L2 LINE L2 -39 3233 2861 1536 109 5 5 chr3 56042079 56042289 -161994869 + AluSc SINE Alu 1 210 -99 3941 208 114 16 chr3 56092930 56093856 -161943302 - L1MDa LINE L1 -5521 1019 3 465 316 21 127 chr3 56094171 56094642 -161942516 + L3 LINE CR1 327 747 -830 775 328 88 12 chr3 56094647 56095247 -161941911 + L1M4 LINE L1 4487 5132 -1014 2692 236 43 14 chr3 56095809 56096307 -161940851 + L1M4 LINE L1 2966 3495 -2651 2331 99 3 0 chr3 56096307 56096609 -161940549 + AluSg SINE Alu 1 303 -7 2692 236 43 14 chr3 56096609 56096850 -161940308 + L1M4 LINE L1 3495 3727 -2419 2326 103 73 18 chr3 56097798 56098138 -161939020 + THE1B LTR MaLR 1 359 -5 241 372 43 0 chr3 56098373 56098467 -161938691 + L2 LINE L2 3126 3223 -49 369 304 59 59 chr3 56098574 56098709 -161938449 + L2 LINE L2 3137 3271 -1 195 268 0 0 chr3 56098819 56098860 -161938298 - MER5A DNA MER1_type 0 189 149 391 260 16 32 chr3 56098996 56099119 -161938039 + MIR3 SINE MIR 65 185 -23 5331 186 41 26 chr3 56099151 56099822 -161937336 - L1MB3 LINE L1 0 6183 5524 2057 141 0 13 chr3 56099822 56100135 -161937023 - AluSx SINE Alu -3 309 1 5331 186 41 26 chr3 56100135 56100813 -161936345 - L1MB3 LINE L1 -659 5524 4858 594 0 0 0 chr3 56100813 56100879 -161936279 + (CTATT)n Simple_repeat Simple_repeat 5 70 0 5331 186 41 26 chr3 56100879 56101638 -161935520 - L1MB3 LINE L1 -1325 4858 4045 2467 71 0 0 chr3 56101846 56102142 -161935016 + AluY SINE Alu 1 296 -15 253 293 78 54 chr3 56102737 56102904 -161934254 - MIR3 SINE MIR -19 189 19 652 229 100 0 chr3 56102997 56103167 -161933991 + MER5A DNA MER1_type 3 189 0 254 287 49 19 chr3 56103602 56103710 -161933448 - MIR SINE MIR -80 128 13 996 171 34 6 chr3 56103829 56104005 -161933153 - MER5A DNA MER1_type 0 189 9 275 313 57 62 chr3 56104449 56104641 -161932517 + L2 LINE L2 2902 3092 -180 360 258 7 136 chr3 56105044 56105199 -161931959 - MLT2E LTR ERVL -456 172 38 297 318 45 9 chr3 56105267 56105377 -161931781 + L2 LINE L2 2797 2910 -404 2724 157 2 27 chr3 56105701 56106140 -161931018 - MSTC LTR MaLR 0 428 1 1725 156 17 14 chr3 56106533 56106828 -161930330 - MSTA LTR MaLR 0 428 133 2106 171 58 22 chr3 56106836 56107251 -161929907 + LTR3 LTR ERVK 1 430 -2 2085 134 11 33 chr3 56107257 56107616 -161929542 + HERVK3 LTR ERVK 1 351 -6892 2063 143 68 43 chr3 56107616 56108055 -161929103 - LTR7 LTR ERV1 0 450 1 3118 136 42 9 chr3 56108055 56108579 -161928579 - HERVH LTR ERV1 0 7713 7173 302 71 0 89 chr3 56108580 56108636 -161928522 - HERVH LTR ERV1 0 7713 7663 * 2596 168 9 7 chr3 56108630 56109089 -161928069 - HERVH LTR ERV1 -765 6948 6489 21400 146 41 38 chr3 56109089 56113298 -161923860 - HERVH LTR ERV1 -3184 4529 1 2081 157 52 30 chr3 56113298 56113738 -161923420 - LTR7 LTR ERV1 0 450 1 3913 99 32 0 chr3 56113750 56114287 -161922871 + HERVK3 LTR ERVK 354 907 -6336 2625 145 43 35 chr3 56114277 56114643 -161922515 + HERVK3 LTR ERVK 282 654 -6183 * 2170 109 0 23 chr3 56114643 56114946 -161922212 + AluY SINE Alu 1 296 -15 2625 145 43 35 chr3 56114946 56115040 -161922118 + HERVK3 LTR ERVK 654 746 -6091 1000 173 13 0 chr3 56115327 56115483 -161921675 + HERVK3 LTR ERVK 2332 2489 -4348 3392 139 8 6 chr3 56115560 56116070 -161921088 + MER9 LTR ERVK 1 511 0 551 138 0 0 chr3 56116416 56116496 -161920662 + HERVK3 LTR ERVK 3474 3553 -3284 * 1023 128 0 0 chr3 56116492 56116673 -161920485 + HERVK3 LTR ERVK 2027 3807 -3030 * 1391 105 5 14 chr3 56116669 56116878 -161920280 + HERVK3 LTR ERVK 2455 2661 -4582 252 242 47 70 chr3 56116909 56117037 -161920121 + MLT1J LTR MaLR 229 353 -158 3355 165 32 75 chr3 56117061 56117587 -161919571 + L1MB7 LINE L1 4537 4976 -1208 458 75 11 151 chr3 56117587 56117630 -161919528 + MADE1 DNA Mariner 1 26 -54 2142 119 37 0 chr3 56117630 56117925 -161919233 - AluY SINE Alu -5 306 1 458 75 11 151 chr3 56117925 56117974 -161919184 + MADE1 DNA Mariner 26 80 0 3355 165 32 75 chr3 56117974 56118572 -161918586 + L1MB7 LINE L1 4976 5598 -586 810 195 0 0 chr3 56118573 56118696 -161918462 + FLAM_C SINE Alu 3 125 -18 1252 184 94 0 chr3 56118698 56118953 -161918205 + L1MB7 LINE L1 5593 5871 -313 1167 158 131 14 chr3 56118958 56119297 -161917861 - MSTA LTR MaLR 0 375 1 7875 181 48 1 chr3 56119297 56120880 -161916278 - MSTA-int LTR MaLR 0 1651 1 2336 130 120 5 chr3 56120880 56121264 -161915894 - MSTA LTR MaLR 0 428 1 1208 160 4 62 chr3 56121264 56121539 -161915619 + L1MB7 LINE L1 5914 6172 -12 3208 89 11 11 chr3 56121547 56121618 -161915540 + L1PB1 LINE L1 5707 5777 -374 504 0 0 0 chr3 56121618 56121674 -161915484 + (TA)n Simple_repeat Simple_repeat 1 56 0 3208 89 11 11 chr3 56121674 56122040 -161915118 + L1PB1 LINE L1 5776 6144 -7 448 241 125 46 chr3 56122063 56122297 -161914861 + L1ME LINE L1 4878 5147 -999 1451 129 200 8 chr3 56122297 56122552 -161914606 + AluSg1 SINE Alu 1 304 -5 448 241 125 46 chr3 56122552 56122645 -161914513 + L1ME LINE L1 5147 5231 -915 2306 108 0 0 chr3 56122651 56122947 -161914211 - AluSg SINE Alu -14 296 1 816 254 101 42 chr3 56123005 56123202 -161913956 + L1ME LINE L1 5401 5585 -585 1438 211 125 3 chr3 56123202 56123553 -161913605 - MSTD LTR MaLR -2 394 1 816 254 101 42 chr3 56123553 56123740 -161913418 + L1ME LINE L1 5585 5808 -362 289 274 0 0 chr3 56123828 56123890 -161913268 + L1ME4a LINE L1 5592 5653 -2155 212 208 42 0 chr3 56124063 56124111 -161913047 + GA-rich Low_complexity Low_complexity 2 51 0 225 319 43 0 chr3 56124159 56124253 -161912905 + L1MC4 LINE L1 7926 8023 -19 321 284 179 5 chr3 56124357 56124547 -161912611 + MIR SINE MIR 13 235 -27 255 170 0 0 chr3 56124609 56124656 -161912502 + (CACCAT)n Simple_repeat Simple_repeat 4 50 0 2243 129 29 129 chr3 56124857 56125368 -161911790 - LTR46 LTR ERV1 0 460 1 2766 88 8 6 chr3 56125405 56125767 -161911391 - THE1B LTR MaLR -1 363 1 300 335 77 26 chr3 56125900 56126172 -161910986 + L1ME4a LINE L1 5806 6091 -30 8286 203 39 16 chr3 56126176 56127984 -161909174 - L1MB5 LINE L1 0 6174 4275 3846 90 6 4 chr3 56127984 56128494 -161908664 - MER9 LTR ERVK 0 511 1 8286 203 39 16 chr3 56128494 56129605 -161907553 - L1MB5 LINE L1 -1899 4275 3191 417 315 41 25 chr3 56131576 56131773 -161905385 + LTR33 LTR ERVL 41 240 -281 3353 118 34 44 chr3 56131856 56132424 -161904734 - MER34B LTR ERV1 -3 562 1 240 184 64 55 chr3 56132445 56132554 -161904604 + LTR33 LTR ERVL 394 503 -18 1636 186 61 0 chr3 56133025 56133305 -161903853 + AluJb SINE Alu 1 297 -15 258 32 0 0 chr3 56133316 56133347 -161903811 + (CAA)n Simple_repeat Simple_repeat 3 33 0 739 125 37 44 chr3 56133839 56133975 -161903183 + L1MA6 LINE L1 5811 5945 -355 940 203 0 0 chr3 56133976 56134133 -161903025 + AluSg/x SINE Alu 132 289 -16 1839 158 25 14 chr3 56134133 56134494 -161902664 + L1MA6 LINE L1 5936 6300 0 223 294 29 0 chr3 56135931 56135999 -161901159 - L2 LINE L2 0 3313 3244 314 265 254 11 chr3 56136625 56136806 -161900352 - MIR SINE MIR -20 242 18 217 328 0 0 chr3 56136950 56137017 -161900141 + L2 LINE L2 3247 3313 0 182 315 119 56 chr3 56137013 56137457 -161899701 - L2 LINE L2 -995 2319 1848 * 238 246 0 33 chr3 56137465 56137526 -161899632 - MLT1L LTR MaLR -4 611 553 2009 103 0 4 chr3 56137540 56137811 -161899347 + AluSc SINE Alu 29 298 -11 326 248 80 16 chr3 56137930 56138055 -161899103 - MLT1L LTR MaLR -283 332 200 22 35 0 0 chr3 56140930 56140959 -161896199 + AT_rich Low_complexity Low_complexity 1 29 0 285 208 14 49 chr3 56141293 56141410 -161895748 - L1MC4 LINE L1 -1000 7000 6859 455 206 285 33 chr3 56141958 56142172 -161894986 + MLT1I LTR MaLR 108 375 -34 1047 76 0 0 chr3 56142562 56142694 -161894464 + AluY SINE Alu 165 296 -15 477 0 0 0 chr3 56143216 56143269 -161893889 + (TG)n Simple_repeat Simple_repeat 2 54 0 14827 123 28 28 chr3 56143728 56143754 -161893404 + Tigger1 DNA MER2_type 24 49 -2369 201 39 0 0 chr3 56143754 56143780 -161893378 + (TTG)n Simple_repeat Simple_repeat 2 27 0 14827 123 28 28 chr3 56143780 56144129 -161893029 + Tigger1 DNA MER2_type 49 397 -2021 1815 166 10 23 chr3 56144129 56144431 -161892727 - AluSx SINE Alu -14 298 1 14827 123 28 28 chr3 56144431 56145516 -161891642 + Tigger1 DNA MER2_type 397 1486 -932 180 0 0 0 chr3 56145516 56145536 -161891622 + (TA)n Simple_repeat Simple_repeat 1 20 0 14827 123 28 28 chr3 56145536 56146469 -161890689 + Tigger1 DNA MER2_type 1486 2418 0 187 357 24 16 chr3 56147198 56147324 -161889834 - L3 LINE CR1 -481 1096 970 701 193 131 23 chr3 56147932 56148165 -161888993 + L1ME3 LINE L1 5866 6286 -48 280 127 63 0 chr3 56148388 56148451 -161888707 + L1ME4a LINE L1 6048 6114 -7 1964 152 10 3 chr3 56148453 56148756 -161888402 - AluSx SINE Alu -7 305 1 332 288 48 0 chr3 56148779 56148925 -161888233 - L3 LINE CR1 -592 985 833 345 281 94 0 chr3 56149517 56149645 -161887513 - MIR3 SINE MIR -4 204 65 25 0 0 0 chr3 56149908 56149933 -161887225 + AT_rich Low_complexity Low_complexity 1 25 0 299 273 149 0 chr3 56150085 56150206 -161886952 - MIR SINE MIR -115 147 9 295 295 108 0 chr3 56150554 56150683 -161886475 - MIR SINE MIR -14 248 106 241 346 44 0 chr3 56151428 56151564 -161885594 + MIR3 SINE MIR 60 201 -7 761 240 107 1 chr3 56152809 56153036 -161884122 + MIR SINE MIR 7 242 -20 1865 139 17 10 chr3 56153127 56153429 -161883729 + AluJo SINE Alu 1 304 -8 198 248 89 30 chr3 56156201 56156302 -161880856 + MIR SINE MIR 153 259 -3 22 56 0 0 chr3 56157222 56157258 -161879900 + AT_rich Low_complexity Low_complexity 1 36 0 2350 83 0 10 chr3 56158583 56158883 -161878275 - AluY SINE Alu -14 297 1 234 239 23 11 chr3 56159109 56159197 -161877961 + (TA)n Simple_repeat Simple_repeat 2 90 0 2946 18 0 0 chr3 56159896 56160226 -161876932 - L1PA2 LINE L1 0 6155 5826 728 34 0 0 chr3 56160226 56160305 -161876853 + L1PA2 LINE L1 5716 5797 -358 2226 147 77 132 chr3 56160350 56160489 -161876669 - LTR36 LTR ERV1 0 611 466 2182 99 0 7 chr3 56160489 56160806 -161876352 + AluSx SINE Alu 2 316 0 2226 147 77 132 chr3 56160806 56161311 -161875847 - LTR36 LTR ERV1 -145 466 1 188 286 0 0 chr3 56161418 56161474 -161875684 - MER5A DNA MER1_type -59 130 75 436 288 26 7 chr3 56161601 56161754 -161875404 - MER5B DNA MER1_type -22 156 1 268 202 147 37 chr3 56162648 56162757 -161874401 + MIR SINE MIR 4 124 -84 2591 177 40 65 chr3 56162795 56163423 -161873735 + LTR9 LTR ERV1 1 612 0 543 200 244 6 chr3 56163481 56163641 -161873517 + MER3 DNA MER1_type 9 206 -3 31 0 0 0 chr3 56163651 56163682 -161873476 + AT_rich Low_complexity Low_complexity 1 31 0 586 215 21 0 chr3 56163721 56163865 -161873293 + MIR SINE MIR 95 241 -21 239 152 0 0 chr3 56164682 56164728 -161872430 - L2 LINE L2 0 3272 3227 2645 186 8 64 chr3 56164824 56165416 -161871742 - LTR9 LTR ERV1 0 612 54 630 69 20 10 chr3 56165679 56165781 -161871377 + (TAGA)n Simple_repeat Simple_repeat 2 104 0 2289 127 8 11 chr3 56166220 56166574 -161870584 + MER41E LTR ERV1 1 353 -159 293 0 27 0 chr3 56166575 56166612 -161870546 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1424 103 0 0 chr3 56166615 56166799 -161870359 - AluY SINE Alu -31 280 97 1500 155 111 15 chr3 56166800 56167071 -161870087 - AluJb SINE Alu -15 297 1 1055 176 0 0 chr3 56167072 56167242 -161869916 + MER41E LTR ERV1 343 512 0 892 196 65 61 chr3 56167535 56167890 -161869268 + L1MC5 LINE L1 7598 7931 -30 200 143 24 0 chr3 56167902 56167944 -161869214 + GA-rich Low_complexity Low_complexity 4 46 0 1128 168 6 0 chr3 56168356 56168535 -161868623 + AluJb SINE Alu 35 214 -98 2374 154 30 9 chr3 56168540 56168981 -161868177 - LTR7 LTR ERV1 0 450 1 4010 91 5 14 chr3 56168981 56169543 -161867615 - HERVH LTR ERV1 0 7713 7157 * 5582 136 5 0 chr3 56169536 56170389 -161866769 - HERVH LTR ERV1 -1697 6016 5160 * 13531 165 17 23 chr3 56170388 56173013 -161864145 - HERVH LTR ERV1 -4164 3549 940 1103 111 0 0 chr3 56173041 56173194 -161863964 + HERVH LTR ERV1 2142 2294 -5419 604 175 36 22 chr3 56173195 56173332 -161863826 - HERVH LTR ERV1 -6774 939 801 1564 197 115 40 chr3 56173392 56173819 -161863339 - HERVH LTR ERV1 -7254 459 1 2302 148 39 14 chr3 56173819 56174258 -161862900 - LTR7 LTR ERV1 0 450 1 422 131 119 0 chr3 56174262 56174346 -161862812 + AluSg/x SINE Alu 216 309 0 372 322 129 35 chr3 56174443 56174698 -161862460 - L2 LINE L2 0 3272 2994 751 279 29 0 chr3 56174934 56175142 -161862016 + MER20 DNA MER1_type 6 219 0 245 289 46 35 chr3 56176048 56176221 -161860937 - L2 LINE L2 -926 2388 2214 318 314 72 48 chr3 56177343 56177752 -161859406 + LTR16A LTR ERVL 4 450 0 386 285 39 82 chr3 56177937 56178218 -161858940 + L2 LINE L2 2972 3240 -32 701 271 72 8 chr3 56178220 56178650 -161858508 - LTR33 LTR ERVL -1 520 11 355 354 105 43 chr3 56178900 56179273 -161857885 + L1MEd LINE L1 365 760 -5359 224 236 0 0 chr3 56179539 56179594 -161857564 + T-rich Low_complexity Low_complexity 1 55 0 282 352 177 35 chr3 56180162 56180838 -161856320 - L2 LINE L2 -1389 1925 1347 1653 153 10 20 chr3 56180838 56181132 -161856026 - AluJb SINE Alu -8 304 14 282 352 177 35 chr3 56181132 56181964 -161855194 - L2 LINE L2 -1967 1347 202 609 299 184 22 chr3 56182194 56182558 -161854600 - LTR16B LTR ERVL 0 464 42 247 123 14 27 chr3 56182596 56182669 -161854489 + (TTTA)n Simple_repeat Simple_repeat 3 74 0 704 201 13 7 chr3 56182774 56182923 -161854235 - MER103 DNA DNA -1 165 16 3929 89 35 2 chr3 56183591 56184142 -161853016 - L1PA14 LINE L1 -2 6159 5591 688 267 165 49 chr3 56184237 56184939 -161852219 - LTR41 LTR ERVL 0 795 5 321 26 0 0 chr3 56185149 56185187 -161851971 + (TC)n Simple_repeat Simple_repeat 2 39 0 2109 120 0 10 chr3 56185187 56185495 -161851663 - AluSx SINE Alu -7 305 1 618 260 178 25 chr3 56185495 56185737 -161851421 + L2 LINE L2 3035 3313 0 212 231 0 0 chr3 56186691 56186730 -161850428 + C-rich Low_complexity Low_complexity 2 40 0 1354 224 0 7 chr3 56186730 56187033 -161850125 - AluJo SINE Alu -11 301 1 533 358 63 5 chr3 56190091 56190312 -161846846 - MIR SINE MIR -6 256 23 816 204 50 6 chr3 56191637 56191818 -161845340 - MER5A DNA MER1_type 0 189 1 2389 209 66 52 chr3 56192321 56192691 -161844467 + L1ME1 LINE L1 5502 5886 -280 1812 151 3 0 chr3 56192691 56193008 -161844150 - AluSx SINE Alu 0 312 1 2389 209 66 52 chr3 56193008 56193287 -161843871 + L1ME1 LINE L1 5886 6160 -6 233 206 32 0 chr3 56193529 56193592 -161843566 + MER45 DNA AcHobo 1405 1469 -112 2160 98 0 32 chr3 56194275 56194591 -161842567 - AluSx SINE Alu -6 306 1 497 206 121 7 chr3 56194657 56194798 -161842360 + MER53 DNA DNA 18 174 -15 214 191 0 0 chr3 56194802 56194844 -161842314 + T-rich Low_complexity Low_complexity 1 42 0 3778 254 32 41 chr3 56195095 56195374 -161841784 + ERVL LTR ERVL 1135 1415 -4349 2372 34 61 0 chr3 56195374 56195670 -161841488 - L1PA4 LINE L1 0 6155 5842 3778 254 32 41 chr3 56195670 56196440 -161840718 + ERVL LTR ERVL 1415 2177 -3587 750 204 0 0 chr3 56196440 56196572 -161840586 + FLAM_C SINE Alu 2 133 0 315 272 19 10 chr3 56196579 56196682 -161840476 + L1M4 LINE L1 3426 3529 -2617 1927 224 107 5 chr3 56196725 56197172 -161839986 + ERVL LTR ERVL 2161 2653 -3111 2066 143 6 9 chr3 56197269 56197584 -161839574 - MER50 LTR ERV1 -23 711 398 1583 124 8 12 chr3 56197579 56197828 -161839330 - MER50 LTR ERV1 -486 248 1 * 445 176 0 0 chr3 56198132 56198200 -161838958 - HERVL18 LTR ERVL -530 5517 5450 382 217 36 0 chr3 56198329 56198412 -161838746 - Charlie1b DNA MER1_type 0 523 438 2216 150 50 0 chr3 56198412 56198752 -161838406 - LTR18A LTR ERVL 0 357 1 28080 129 11 1 chr3 56198753 56202643 -161834515 - HERVL18 LTR ERVL 0 6047 2121 11514 154 26 7 chr3 56202644 56204413 -161832745 - HERVL18 LTR ERVL -4237 1810 9 2299 118 76 0 chr3 56204427 56204757 -161832401 - LTR18A LTR ERVL 0 357 3 594 178 29 29 chr3 56204759 56204933 -161832225 - Charlie1b DNA MER1_type -81 442 269 1147 168 5 5 chr3 56204942 56205138 -161832020 - AluJo SINE Alu -116 196 1 578 203 108 7 chr3 56205141 56205289 -161831869 - Charlie1b DNA MER1_type -307 216 54 458 256 38 16 chr3 56205431 56205597 -161831561 - MIR3 SINE MIR -27 181 12 1978 141 0 3 chr3 56205698 56206011 -161831147 + AluSx SINE Alu 1 312 0 835 135 0 15 chr3 56206152 56206285 -161830873 - AluJb SINE Alu -173 139 9 870 168 7 0 chr3 56206286 56206435 -161830723 + AluJb SINE Alu 148 297 -15 286 278 40 32 chr3 56206661 56206788 -161830370 - L1MC/D LINE L1 -528 5593 5469 2204 168 37 20 chr3 56207401 56207806 -161829352 + LTR3 LTR ERVK 5 416 -16 15871 117 18 1 chr3 56207828 56210110 -161827048 + HERVK3 LTR ERVK 1 2321 -4922 881 130 0 3 chr3 56210110 56210250 -161826908 - LTR17 LTR ERV1 0 780 597 * 8190 126 33 3 chr3 56210248 56211496 -161825662 + HERVK3 LTR ERVK 4074 5358 -1885 396 141 0 0 chr3 56211491 56211555 -161825603 + HERVK3 LTR ERVK 6264 6327 -916 * 2836 60 6 0 chr3 56211623 56211974 -161825184 - L1PA6 LINE L1 -15 6139 5787 3358 96 0 0 chr3 56211974 56212410 -161824748 + HERVK3 LTR ERVK 6330 6765 -478 5098 94 48 35 chr3 56212410 56213561 -161823597 + MER11A LTR ERVK 1 1266 0 3803 79 2 0 chr3 56213561 56214044 -161823114 + HERVK3 LTR ERVK 6760 7243 0 2256 152 42 20 chr3 56214048 56214449 -161822709 + LTR3 LTR ERVK 5 414 -18 257 175 0 0 chr3 56214473 56214513 -161822645 + HERVK3 LTR ERVK 1 40 -7203 300 280 70 0 chr3 56215135 56215235 -161821923 + MLT1I LTR MaLR 96 202 -207 429 61 30 0 chr3 56215238 56215304 -161821854 - MER41B LTR ERV1 -86 549 482 606 265 36 41 chr3 56215321 56215517 -161821641 + MLT1I LTR MaLR 198 392 -17 3408 142 26 21 chr3 56216035 56216600 -161820558 + LTR36 LTR ERV1 44 611 0 417 259 89 0 chr3 56217472 56217584 -161819574 - L2 LINE L2 0 3272 3151 937 187 67 24 chr3 56217690 56217899 -161819259 - MER20 DNA MER1_type -1 218 1 1603 175 7 13 chr3 56218203 56218506 -161818652 - AluJo SINE Alu -11 301 1 24 0 0 0 chr3 56218614 56218638 -161818520 + AT_rich Low_complexity Low_complexity 1 24 0 2000 171 19 48 chr3 56220533 56220678 -161816480 + L1MB7 LINE L1 5767 5915 -269 847 143 8 0 chr3 56220678 56220804 -161816354 + FLAM_C SINE Alu 1 127 -6 2000 171 19 48 chr3 56220804 56221078 -161816080 + L1MB7 LINE L1 5915 6174 -10 225 83 0 0 chr3 56222043 56222079 -161815079 + (TG)n Simple_repeat Simple_repeat 1 36 0 1010 224 130 36 chr3 56222575 56222785 -161814373 + HAL1 LINE L1 1729 1918 -589 288 0 0 0 chr3 56222785 56222817 -161814341 + (GA)n Simple_repeat Simple_repeat 2 33 0 * 459 52 0 0 chr3 56222816 56222874 -161814284 + (TG)n Simple_repeat Simple_repeat 2 59 0 1010 224 130 36 chr3 56222817 56223056 -161814102 + HAL1 LINE L1 1918 2158 -349 180 327 111 25 chr3 56223984 56224146 -161813012 - MIR3 SINE MIR -12 196 21 1136 278 37 62 chr3 56224767 56225285 -161811873 + MLT1J LTR MaLR 1 505 -6 205 200 88 120 chr3 56226952 56227077 -161810081 + MIR SINE MIR 47 167 -95 1357 224 108 19 chr3 56227490 56227954 -161809204 + L1ME3A LINE L1 5651 6155 -15 542 272 106 66 chr3 56228769 56228961 -161808197 + L1ME4a LINE L1 5614 5797 -324 1962 144 0 10 chr3 56228961 56229259 -161807899 + AluJo SINE Alu 3 297 -15 542 272 106 66 chr3 56229259 56229548 -161807610 + L1ME4a LINE L1 5797 6114 -7 187 324 28 0 chr3 56231653 56231724 -161805434 - MIR SINE MIR -71 137 65 429 336 72 42 chr3 56232089 56232474 -161804684 + L1ME2 LINE L1 3608 3980 -2166 2285 111 0 0 chr3 56232474 56232772 -161804386 - AluSx SINE Alu -14 298 1 429 336 72 42 chr3 56232772 56233398 -161803760 + L1ME2 LINE L1 3980 4650 -1496 243 157 0 0 chr3 56233447 56233498 -161803660 + CT-rich Low_complexity Low_complexity 1 51 0 349 303 63 78 chr3 56233963 56234234 -161802924 + L1ME2 LINE L1 5259 5528 -714 316 329 56 21 chr3 56234685 56234828 -161802330 + L1ME2 LINE L1 5736 5883 -281 1517 177 27 13 chr3 56285364 56285664 -161751494 + L1MD3 LINE L1 7692 7995 0 251 260 0 0 chr3 56285674 56285737 -161751421 + MIR SINE MIR 91 146 -62 186 43 0 0 chr3 56286318 56286341 -161750817 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr3 56287760 56287781 -161749377 + AT_rich Low_complexity Low_complexity 1 21 0 531 0 0 0 chr3 56288003 56288062 -161749096 + (TG)n Simple_repeat Simple_repeat 2 60 0 1535 184 0 20 chr3 56288077 56288381 -161748777 - AluJo SINE Alu -1 311 14 405 0 0 0 chr3 56288403 56288448 -161748710 + (TA)n Simple_repeat Simple_repeat 1 45 0 1229 120 6 0 chr3 56288452 56288627 -161748531 - AluSg/x SINE Alu -30 280 105 304 259 130 31 chr3 56288836 56288969 -161748189 + MIR SINE MIR 105 252 -10 617 195 0 9 chr3 56289350 56289463 -161747695 + FLAM_C SINE Alu 5 116 -27 22 35 0 0 chr3 56289465 56289494 -161747664 + AT_rich Low_complexity Low_complexity 1 29 0 1636 254 75 21 chr3 56289494 56290017 -161747141 - L1ME3A LINE L1 -5 6165 5615 326 197 0 15 chr3 56290017 56290083 -161747075 - MER63 DNA MER1_type 0 1061 997 1275 164 0 62 chr3 56290130 56290374 -161746784 - MER63 DNA MER1_type -209 851 623 252 212 50 0 chr3 56290374 56290473 -161746685 + CT-rich Low_complexity Low_complexity 1 104 0 874 105 0 58 chr3 56290473 56290664 -161746494 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 240 35 0 0 chr3 56290693 56290722 -161746436 + (TTCCC)n Simple_repeat Simple_repeat 1 29 0 2622 137 20 49 chr3 56291197 56291644 -161745514 - Tigger2a DNA MER2_type 0 434 1 639 253 6 0 chr3 56292702 56292868 -161744290 + L1M1 LINE L1 31 197 -6666 * 3975 147 27 3 chr3 56292865 56293560 -161743598 + L1M1 LINE L1 1392 2103 -4760 460 226 40 8 chr3 56293673 56293797 -161743361 - FLAM_C SINE Alu -12 131 4 1869 190 26 50 chr3 56293809 56293975 -161743183 - L1MC4 LINE L1 -878 7164 6996 1822 156 3 0 chr3 56293975 56294270 -161742888 - AluJb SINE Alu -16 296 1 1869 190 26 50 chr3 56294270 56294560 -161742598 - L1MC4 LINE L1 -1046 6996 6719 2266 99 3 0 chr3 56296069 56296373 -161740785 - AluSg1 SINE Alu -4 305 1 234 221 91 78 chr3 56296468 56296545 -161740613 - MIR SINE MIR -177 85 8 1189 136 16 0 chr3 56297208 56297392 -161739766 + AluSx SINE Alu 1 187 -125 346 301 21 14 chr3 56297569 56297712 -161739446 + (CCCTAA)n Simple_repeat Simple_repeat 5 148 0 1462 179 61 14 chr3 56299787 56300083 -161737075 - AluJb SINE Alu -2 310 1 225 103 0 0 chr3 56301456 56301485 -161735673 - Alu SINE Alu -271 29 1 2259 69 3 0 chr3 56301509 56301797 -161735361 + AluSp SINE Alu 5 293 -20 1907 138 18 21 chr3 56301797 56302130 -161735028 + LTR56 LTR ERV1 16 347 -98 11263 130 10 19 chr3 56302130 56303098 -161734060 + L1M1 LINE L1 4089 5065 -1953 1816 154 13 26 chr3 56303098 56303410 -161733748 + AluJo SINE Alu 1 308 -4 11263 130 10 19 chr3 56303410 56304848 -161732310 + L1M1 LINE L1 5065 6467 -551 2348 84 0 0 chr3 56305574 56305873 -161731285 + AluSx SINE Alu 1 299 -13 616 183 43 0 chr3 56305948 56306063 -161731095 - MER45A DNA AcHobo -1 177 58 2475 61 0 0 chr3 56306383 56306694 -161730464 + AluY SINE Alu 1 311 0 895 286 86 26 chr3 56306732 56307151 -161730007 + HAL1 LINE L1 7 450 -2057 1306 204 14 11 chr3 56307577 56307856 -161729302 + AluJo SINE Alu 31 310 -2 355 194 19 58 chr3 56308000 56308103 -161729055 + HAL1 LINE L1 1041 1139 -1368 2286 64 0 0 chr3 56308667 56308991 -161728167 + AluY SINE Alu 1 324 0 207 302 0 47 chr3 56309264 56309350 -161727808 - MIR SINE MIR -55 207 126 404 129 0 29 chr3 56309499 56309569 -161727589 + AluJb SINE Alu 64 131 -181 1424 87 0 0 chr3 56309571 56309755 -161727403 + AluSx SINE Alu 3 186 -126 344 71 0 0 chr3 56309755 56309797 -161727361 + Alu SINE Alu 233 274 -26 198 0 0 0 chr3 56309800 56309822 -161727336 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 5298 84 34 71 chr3 56311102 56312452 -161724706 - SVA Other Other -518 868 14 455 0 0 18 chr3 56312457 56312513 -161724645 + (GGGAGA)n Simple_repeat Simple_repeat 1 55 0 185 310 62 0 chr3 56312600 56312713 -161724445 + L2 LINE L2 3150 3269 -3 810 41 10 0 chr3 56312723 56312821 -161724337 - AluY SINE Alu -177 134 36 264 53 0 0 chr3 56312832 56312870 -161724288 - AluSg/x SINE Alu -169 131 94 470 263 18 22 chr3 56312907 56313150 -161724008 - MER41B LTR ERV1 -205 430 55 439 176 250 0 chr3 56313258 56313366 -161723792 - MER74C LTR ERVL -296 164 30 806 212 130 48 chr3 56313407 56313723 -161723435 + MLT1C LTR MaLR 126 467 0 240 254 51 112 chr3 56314010 56314207 -161722951 + L2 LINE L2 2966 3150 -163 637 273 96 47 chr3 56315455 56315779 -161721379 + L1ME3A LINE L1 5481 5828 -342 1277 187 114 45 chr3 56315779 56316138 -161721020 + MER58D DNA MER1_type 2 385 -1 637 273 96 47 chr3 56316138 56316198 -161720960 + L1ME3A LINE L1 5828 5884 -286 269 221 114 70 chr3 56317444 56317602 -161719556 - LTR41 LTR ERVL -590 183 19 4005 207 94 38 chr3 56317607 56317764 -161719394 + L1MC3 LINE L1 6203 6350 -1435 210 105 0 0 chr3 56317764 56317802 -161719356 + (TA)n Simple_repeat Simple_repeat 2 39 0 1963 113 3 0 chr3 56317802 56318085 -161719073 - AluSg SINE Alu -26 284 1 4005 207 94 38 chr3 56318085 56319097 -161718061 + L1MC3 LINE L1 6349 7438 -347 2313 87 6 0 chr3 56319199 56319510 -161717648 - AluSp SINE Alu 0 313 1 2220 167 57 21 chr3 56319517 56319919 -161717239 + L1MEc LINE L1 2042 2290 -4136 1569 186 3 17 chr3 56319919 56320214 -161716944 - AluJb SINE Alu -21 291 1 2220 167 57 21 chr3 56320214 56320411 -161716747 + L1MEc LINE L1 2290 2479 -3947 676 207 0 0 chr3 56320414 56320554 -161716604 - L1M4 LINE L1 -1266 4880 4741 771 148 0 0 chr3 56320556 56320671 -161716487 - AluSg/x SINE Alu -13 297 183 9569 202 45 72 chr3 56320686 56322649 -161714509 + L1MEc LINE L1 2621 4636 -1790 250 191 0 0 chr3 56322649 56322691 -161714467 + 5S rRNA rRNA 1 42 -79 261 57 0 0 chr3 56322698 56322733 -161714425 + (CA)n Simple_repeat Simple_repeat 1 35 0 9569 202 45 72 chr3 56322733 56323221 -161713937 + L1MEc LINE L1 4642 5142 -1284 1937 133 7 17 chr3 56323221 56323521 -161713637 + AluSx SINE Alu 6 302 -10 9569 202 45 72 chr3 56323521 56323930 -161713228 + L1MEc LINE L1 5142 5561 -865 1881 148 57 0 chr3 56323930 56324213 -161712945 + AluJb SINE Alu 1 299 -13 9569 202 45 72 chr3 56324213 56324228 -161712930 + L1MEc LINE L1 5561 5575 -851 2211 99 0 15 chr3 56324228 56324556 -161712602 + AluSg SINE Alu 1 280 -30 9569 202 45 72 chr3 56324556 56324764 -161712394 + L1MEc LINE L1 5575 5652 -774 337 200 0 0 chr3 56324767 56324832 -161712326 - L1 LINE L1 -1311 4835 4771 1555 167 59 3 chr3 56324832 56325119 -161712039 + L1MC1 LINE L1 6016 6318 -15 225 0 0 0 chr3 56325119 56325144 -161712014 + (TG)n Simple_repeat Simple_repeat 2 26 0 2152 107 3 10 chr3 56325145 56325434 -161711724 - AluSq SINE Alu -26 287 1 5899 100 13 25 chr3 56325870 56325956 -161711202 + L1PB2 LINE L1 5264 5349 -802 2442 67 3 3 chr3 56325956 56326255 -161710903 + AluY SINE Alu 1 299 -12 5899 100 13 25 chr3 56326255 56327062 -161710096 + L1PB2 LINE L1 5349 6147 -4 489 261 106 28 chr3 56327302 56327482 -161709676 + LTR33 LTR ERVL 328 521 0 3489 126 19 15 chr3 56327570 56328095 -161709063 + MER1A DNA MER1_type 1 527 0 1788 169 41 0 chr3 56328416 56328706 -161708452 - AluJb SINE Alu -10 302 1 2277 100 14 0 chr3 56328870 56329159 -161707999 + AluSx SINE Alu 3 295 -17 284 302 39 16 chr3 56329458 56329587 -161707571 - MER113 DNA MER1_type? -257 264 133 607 288 188 10 chr3 56329661 56330161 -161706997 - MLT1G LTR MaLR 0 590 2 5134 27 2 2 chr3 56330668 56331229 -161705929 + SVA Other Other 824 1384 -2 22 0 0 0 chr3 56331229 56331251 -161705907 + AT_rich Low_complexity Low_complexity 1 22 0 1693 157 17 27 chr3 56331437 56331736 -161705422 + MER74C LTR ERVL 164 459 -1 320 208 28 0 chr3 56331739 56331811 -161705347 - MLT1D LTR MaLR -378 127 54 536 148 11 6 chr3 56331890 56332004 -161705154 - MER4E LTR ERV1 -588 284 62 * 1440 185 19 7 chr3 56331999 56332269 -161704889 - MER49 LTR ERV1 -646 277 5 1392 126 10 0 chr3 56332279 56332486 -161704672 - MER2 DNA MER2_type -135 210 2 234 289 8 8 chr3 56332632 56332710 -161704448 + CT-rich Low_complexity Low_complexity 4 128 0 352 218 127 25 chr3 56334811 56334974 -161702184 - MLT1J2 LTR MaLR -183 263 69 286 243 0 14 chr3 56335592 56335666 -161701492 + MIR3 SINE MIR 128 200 -8 1215 215 49 52 chr3 56336414 56336739 -161700419 + L1MB5 LINE L1 5851 6174 0 2075 208 27 33 chr3 56336977 56337458 -161699700 + MER82 DNA MER2_type 168 645 -8 2061 108 36 0 chr3 56337862 56338140 -161699018 + AluSx SINE Alu 11 298 -14 2223 185 39 0 chr3 56338771 56339187 -161697971 - MSTB1 LTR MaLR 0 432 1 277 166 38 121 chr3 56339638 56339795 -161697363 + Charlie7 DNA MER1_type 2453 2596 -16 2355 81 0 19 chr3 56339807 56340115 -161697043 + AluY SINE Alu 1 302 -9 252 59 0 0 chr3 56340119 56340153 -161697005 + (CAA)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr3 56340184 56340208 -161696950 + AT_rich Low_complexity Low_complexity 1 24 0 2409 108 47 8 chr3 56340273 56340634 -161696524 - THE1C LTR MaLR 0 375 1 274 390 39 0 chr3 56342088 56342293 -161694865 - L1MEc LINE L1 -6017 379 167 255 197 15 45 chr3 56342591 56342657 -161694501 - Charlie5 DNA MER1_type 0 2624 2561 351 0 0 0 chr3 56342657 56342696 -161694462 + (TTA)n Simple_repeat Simple_repeat 2 40 0 311 192 0 0 chr3 56342696 56342748 -161694410 - AluJb SINE Alu -180 122 71 1283 202 24 8 chr3 56342806 56343058 -161694100 + LTR47B LTR ERVL 188 443 0 3016 6 0 0 chr3 56343833 56344151 -161693007 - AluYb8 SINE Alu 0 318 1 272 159 0 0 chr3 56344345 56344385 -161692773 - MLT2B2 LTR ERVL -5 510 471 868 138 7 59 chr3 56344385 56344537 -161692621 - Tigger5 DNA MER2_type 0 2323 2180 672 240 7 14 chr3 56344547 56344693 -161692465 - Tigger5 DNA MER2_type -2178 145 1 834 115 0 0 chr3 56344714 56344827 -161692331 + MER83 LTR ERV1 1 113 -335 1629 125 87 67 chr3 56344900 56345245 -161691913 + MER83 LTR ERV1 97 448 0 2105 170 86 28 chr3 56345245 56345674 -161691484 - MLT2B2 LTR ERVL -61 454 1 436 324 84 42 chr3 56345776 56346323 -161690835 - L1M4 LINE L1 -1435 4711 4142 258 345 0 0 chr3 56346558 56346671 -161690487 + L1P LINE L1 4900 5012 -1134 2230 178 47 30 chr3 56346733 56347204 -161689954 + MLT1D LTR MaLR 26 504 -1 2493 150 54 18 chr3 56347867 56348367 -161688791 - L1MB2 LINE L1 -2 6169 5652 207 69 0 0 chr3 56348393 56348422 -161688736 + (T)n Simple_repeat Simple_repeat 1 29 0 1461 150 11 34 chr3 56348431 56348697 -161688461 - L1MB2 LINE L1 -497 5674 5415 1281 218 46 89 chr3 56350011 56350383 -161686775 + MER39 LTR ERV1 1 529 -178 2260 119 0 0 chr3 56350383 56350677 -161686481 + AluSx SINE Alu 3 296 -16 1281 218 46 89 chr3 56350677 56350849 -161686309 + MER39 LTR ERV1 529 707 0 24 32 0 0 chr3 56351222 56351253 -161685905 + AT_rich Low_complexity Low_complexity 1 31 0 2357 95 10 3 chr3 56351468 56351772 -161685386 - AluSg SINE Alu -4 306 1 2206 166 35 53 chr3 56352074 56352527 -161684631 + LTR42 LTR ERVL 1 445 -50 700 242 109 0 chr3 56352549 56352714 -161684444 - MER3 DNA MER1_type -26 183 1 1790 157 0 51 chr3 56352845 56353157 -161684001 - AluJb SINE Alu -16 296 1 2308 107 3 3 chr3 56353870 56354178 -161682980 - AluSx SINE Alu -4 308 1 202 264 57 28 chr3 56354994 56355100 -161682058 + L2 LINE L2 1690 1798 -1516 429 246 18 9 chr3 56355100 56355210 -161681948 + MER5A DNA MER1_type 1 111 -78 335 218 13 0 chr3 56355431 56355509 -161681649 - MER116 DNA Mariner -1 79 1 96 81 0 0 chr3 56355528 56355750 -161681408 + AT_rich Low_complexity Low_complexity 1 222 0 23 0 0 0 chr3 56357004 56357027 -161680131 + AT_rich Low_complexity Low_complexity 1 23 0 2239 106 0 0 chr3 56357609 56357944 -161679214 + AluSx SINE Alu 1 335 0 1637 172 0 8 chr3 56357962 56358224 -161678934 + AluJo SINE Alu 14 273 -39 522 0 0 0 chr3 56358280 56358338 -161678820 + (CA)n Simple_repeat Simple_repeat 2 59 0 786 193 0 0 chr3 56358770 56358936 -161678222 + (TCCA)n Simple_repeat Simple_repeat 3 168 0 1135 153 0 11 chr3 56360149 56360325 -161676833 - AluJb SINE Alu -2 310 137 1818 182 3 0 chr3 56360326 56360622 -161676536 - AluJo SINE Alu -15 297 1 230 335 52 34 chr3 56360636 56360985 -161676173 - L1M4 LINE L1 -1419 4727 4373 1578 121 4 4 chr3 56361014 56361254 -161675904 - AluSg/x SINE Alu 0 310 71 1798 176 16 20 chr3 56362795 56363101 -161674057 - AluJb SINE Alu -7 305 1 754 162 0 44 chr3 56363366 56363502 -161673656 - FLAM_C SINE Alu -3 130 1 1821 173 3 17 chr3 56363901 56364202 -161672956 + AluJo SINE Alu 1 297 -15 890 135 15 0 chr3 56364366 56364499 -161672659 + AluJo SINE Alu 1 135 -177 1725 161 0 0 chr3 56365369 56365618 -161671540 + AluSx SINE Alu 1 249 -63 2469 101 12 9 chr3 56365622 56365960 -161671198 - THE1B LTR MaLR -25 339 1 882 165 38 84 chr3 56365962 56366223 -161670935 + L1M4 LINE L1 2293 2541 -3605 501 138 115 0 chr3 56366223 56366310 -161670848 - Alu SINE Alu -13 297 201 295 183 0 17 chr3 56366406 56366466 -161670692 + L1MB8 LINE L1 6109 6167 -11 604 247 73 52 chr3 56366466 56366753 -161670405 - L2 LINE L2 -655 2659 2367 2078 136 0 0 chr3 56367394 56367688 -161669470 + AluSx SINE Alu 1 294 -18 1894 136 0 0 chr3 56368495 56368774 -161668384 - Tigger5 DNA MER2_type 0 2323 2045 180 0 0 0 chr3 56368774 56368794 -161668364 + (TTCC)n Simple_repeat Simple_repeat 1 20 0 450 157 19 19 chr3 56368794 56368902 -161668256 + CT-rich Low_complexity Low_complexity 4 111 0 945 133 6 11 chr3 56368911 56368980 -161668178 + (TTTC)n Simple_repeat Simple_repeat 1 69 -111 3594 53 8 8 chr3 56368980 56369449 -161667709 - L1PA8 LINE L1 0 6172 5704 945 133 6 11 chr3 56369449 56369560 -161667598 + (TTTC)n Simple_repeat Simple_repeat 69 180 0 467 247 0 0 chr3 56369583 56369676 -161667482 - Tigger5 DNA MER2_type -2230 93 1 292 308 77 0 chr3 56370584 56370701 -161666457 - MIR3 SINE MIR -9 199 74 183 80 0 0 chr3 56370877 56370902 -161666256 + (TAA)n Simple_repeat Simple_repeat 1 25 0 777 157 113 27 chr3 56370912 56371097 -161666061 - MIR SINE MIR -34 228 28 417 208 21 0 chr3 56371462 56371558 -161665600 - MIR SINE MIR -64 198 101 688 231 29 0 chr3 56371657 56371830 -161665328 - MER5B DNA MER1_type 0 178 1 1644 132 103 7 chr3 56372199 56372471 -161664687 - AluJb SINE Alu -14 298 1 455 174 0 65 chr3 56372799 56372891 -161664267 - LTR40a LTR ERVL -16 503 418 822 290 44 4 chr3 56372937 56373189 -161663969 - LTR40c LTR ERVL -182 283 22 261 182 0 0 chr3 56373202 56373246 -161663912 - HERVL40 LTR ERVL -15 5515 5472 2085 107 23 20 chr3 56373424 56373724 -161663434 + AluSq SINE Alu 1 301 -12 435 194 56 117 chr3 56375915 56376095 -161661063 + LTR37A LTR ERV1 59 227 -199 1133 108 0 0 chr3 56376100 56376257 -161660901 - AluSg/x SINE Alu -9 303 147 332 287 21 0 chr3 56376260 56376354 -161660804 + L2 LINE L2 1125 1220 -2094 268 177 32 16 chr3 56376365 56376427 -161660731 + L2 LINE L2 1026 1088 -2226 * 319 278 87 32 chr3 56376421 56376547 -161660611 + L2 LINE L2 2920 3052 -261 1330 150 8 38 chr3 56376798 56377064 -161660094 + AluJo SINE Alu 50 307 -5 330 26 0 0 chr3 56377079 56377118 -161660040 + (TG)n Simple_repeat Simple_repeat 2 40 0 2175 116 63 6 chr3 56378104 56378423 -161658735 - MER1B DNA MER1_type 0 337 1 465 141 64 0 chr3 56379373 56379451 -161657707 - FLAM_A SINE Alu -4 138 56 352 207 138 0 chr3 56379548 56379635 -161657523 + MIR SINE MIR 66 164 -98 2466 48 0 26 chr3 56379762 56380075 -161657083 - AluY SINE Alu -6 305 1 207 0 0 0 chr3 56381136 56381159 -161655999 + (T)n Simple_repeat Simple_repeat 1 23 0 1337 153 0 9 chr3 56381179 56381401 -161655757 - AluJo SINE Alu -8 304 85 205 250 0 0 chr3 56381665 56381709 -161655449 + (CACG)n Simple_repeat Simple_repeat 4 47 0 443 178 0 0 chr3 56382368 56382441 -161654717 + L2 LINE L2 3241 3313 0 374 188 21 62 chr3 56382831 56382927 -161654231 - AluJ SINE Alu 0 302 211 1230 187 0 0 chr3 56382953 56383172 -161653986 - AluJo SINE Alu -93 219 1 1728 168 0 3 chr3 56383360 56383704 -161653454 - AluJb SINE Alu 0 343 1 2129 111 10 3 chr3 56383747 56384053 -161653105 + AluSg SINE Alu 1 308 -2 2392 157 17 13 chr3 56384094 56384597 -161652561 - L1M4 LINE L1 -493 5691 5185 * 3232 217 84 54 chr3 56384596 56385492 -161651666 - L1MDa LINE L1 -3858 2682 1815 1682 192 0 22 chr3 56385492 56385809 -161651349 - AluJb SINE Alu 0 312 3 3232 217 84 54 chr3 56385809 56385957 -161651201 - L1MDa LINE L1 -4725 1815 1673 2353 89 0 0 chr3 56385957 56386261 -161650897 - AluSg SINE Alu -6 304 1 3232 217 84 54 chr3 56386261 56386434 -161650724 - L1MDa LINE L1 -4867 1673 1507 3584 54 7 5 chr3 56386434 56386881 -161650277 + LTR7 LTR ERV1 1 448 -2 3232 217 84 54 chr3 56386881 56387043 -161650115 - L1MDa LINE L1 -5033 1507 1260 495 199 60 72 chr3 56387572 56387738 -161649420 - LTR41 LTR ERVL -608 165 2 1235 171 58 0 chr3 56388233 56388491 -161648667 + L1MA7 LINE L1 5907 6179 -112 331 231 13 0 chr3 56390406 56390484 -161646674 - MER58 DNA MER1_type -33 2387 2309 1324 161 72 58 chr3 56390641 56390932 -161646226 + AluJb SINE Alu 1 295 -17 910 239 35 16 chr3 56391639 56391894 -161645264 + MLT1F1 LTR MaLR 308 567 0 357 296 133 53 chr3 56391953 56392119 -161645039 + L2 LINE L2 2281 2432 -881 2107 125 10 0 chr3 56392119 56392416 -161644742 - AluSx SINE Alu -12 300 1 357 296 133 53 chr3 56392416 56393085 -161644073 + L2 LINE L2 2432 3179 -134 447 339 49 9 chr3 56394586 56394810 -161642348 + MIR SINE MIR 16 248 -14 1625 59 18 0 chr3 56396364 56396585 -161640573 - AluSg/x SINE Alu -1 309 85 1961 134 17 0 chr3 56397966 56398257 -161638901 + AluSx SINE Alu 1 296 -16 337 280 95 61 chr3 56398447 56399206 -161637952 - L2 LINE L2 -18 3254 2460 413 302 38 13 chr3 56399331 56399490 -161637668 + REP3 LTR ERV 12 174 -388 * 465 338 78 0 chr3 56399489 56399708 -161637450 + REP3 LTR ERV 279 514 -48 1625 162 36 0 chr3 56403017 56403172 -161633986 - AluJb SINE Alu -24 288 117 186 43 0 0 chr3 56403172 56403195 -161633963 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1625 162 36 0 chr3 56403195 56403317 -161633841 - AluJb SINE Alu -195 117 1 926 231 9 5 chr3 56403318 56403530 -161633628 - MER63 DNA MER1_type -427 633 421 295 208 83 28 chr3 56403633 56403705 -161633453 - L1ME LINE L1 -540 5622 5547 1387 129 9 0 chr3 56403715 56403932 -161633226 - AluSg/x SINE Alu -3 307 89 303 163 0 0 chr3 56404074 56404117 -161633041 - Alu SINE Alu -259 43 1 1104 240 84 56 chr3 56405374 56405663 -161631495 + L2 LINE L2 2307 2587 -727 2025 95 0 14 chr3 56405663 56405947 -161631211 + AluSx SINE Alu 1 280 -32 243 0 0 0 chr3 56405947 56405974 -161631184 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 1104 240 84 56 chr3 56405974 56406218 -161630940 + L2 LINE L2 2586 2916 -398 250 247 136 11 chr3 56406540 56406652 -161630506 + MIR SINE MIR 36 160 -65 198 356 11 11 chr3 56407688 56407775 -161629383 - MIR SINE MIR 0 262 176 609 310 35 5 chr3 56407794 56407991 -161629167 - MIR SINE MIR -10 252 50 1887 259 89 21 chr3 56408286 56408945 -161628213 + L1ME3A LINE L1 5461 6164 -6 766 215 127 67 chr3 56408986 56409316 -161627842 + L1ME3A LINE L1 3813 4162 -1984 421 291 17 17 chr3 56409353 56409470 -161627688 + L1ME3A LINE L1 4258 4374 -1772 845 261 60 28 chr3 56409479 56409763 -161627395 + L1ME3A LINE L1 5849 6141 -29 414 0 0 0 chr3 56409914 56409960 -161627198 + (TG)n Simple_repeat Simple_repeat 2 47 0 1598 216 36 8 chr3 56410059 56411584 -161625574 - L1MDa LINE L1 -2501 4039 2303 1790 192 138 2 chr3 56411585 56411991 -161625167 + MLT1D LTR MaLR 2 462 -43 398 230 0 23 chr3 56411992 56412079 -161625079 - L1MDa LINE L1 -6437 103 19 588 126 11 21 chr3 56412822 56412917 -161624241 + FRAM SINE Alu 44 137 -39 234 0 0 0 chr3 56412920 56412946 -161624212 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 396 0 0 0 chr3 56412945 56412989 -161624169 + (CA)n Simple_repeat Simple_repeat 1 44 0 201 303 66 0 chr3 56413931 56414007 -161623151 - L2 LINE L2 -38 3234 3154 249 226 0 0 chr3 56414128 56414212 -161622946 + GA-rich Low_complexity Low_complexity 2 85 0 491 314 39 29 chr3 56414556 56414760 -161622398 - MIR SINE MIR -43 219 14 187 256 0 0 chr3 56414852 56414895 -161622263 + L3 LINE CR1 1178 1220 -357 204 228 16 24 chr3 56415460 56415538 -161621620 + GA-rich Low_complexity Low_complexity 1 77 0 196 330 140 0 chr3 56415946 56416046 -161621112 + MIR SINE MIR 47 160 -102 200 287 218 0 chr3 56416260 56416347 -161620811 + MIR SINE MIR 73 178 -84 490 198 95 35 chr3 56416514 56416630 -161620528 + MER63 DNA MER1_type 1 749 -87 228 280 77 42 chr3 56417474 56417617 -161619541 - L2 LINE L2 -909 2405 2258 926 188 0 24 chr3 56417663 56417856 -161619302 + FRAM SINE Alu 1 53 0 15681 192 13 11 chr3 56417970 56419353 -161617805 + L1PB1 LINE L1 1570 2948 -3203 2013 85 27 20 chr3 56419353 56419648 -161617510 + AluY SINE Alu 1 297 -14 15681 192 13 11 chr3 56419648 56420682 -161616476 + L1PB1 LINE L1 2948 3978 -2173 2288 80 13 0 chr3 56420682 56420981 -161616177 + AluSp SINE Alu 1 303 -10 15681 192 13 11 chr3 56420981 56422507 -161614651 + L1PB1 LINE L1 3978 5498 -653 2256 133 17 0 chr3 56422507 56422849 -161614309 + L1PB1 LINE L1 5794 6144 -7 209 338 14 0 chr3 56423172 56423243 -161613915 + GA-rich Low_complexity Low_complexity 2 73 0 918 145 0 26 chr3 56423826 56423978 -161613180 + L1 LINE L1 4052 4199 -1947 251 167 0 0 chr3 56424700 56424742 -161612416 + MIR SINE MIR 80 121 -141 952 137 7 0 chr3 56426655 56426808 -161610350 - AluSg/x SINE Alu -19 291 138 1908 124 10 3 chr3 56426816 56427114 -161610044 - AluSx SINE Alu -12 300 1 203 229 205 36 chr3 56427186 56427269 -161609889 - L2 LINE L2 -8 3264 3168 1948 108 7 0 chr3 56427518 56427828 -161609330 + AluSp SINE Alu 6 317 0 414 226 28 0 chr3 56427828 56427934 -161609224 - L1ME1 LINE L1 -104 6062 5954 1772 136 3 21 chr3 56428210 56428524 -161608634 - AluJo SINE Alu 0 309 1 203 366 52 8 chr3 56429346 56429480 -161607678 - MIR3 SINE MIR -66 142 3 186 43 0 0 chr3 56430147 56430170 -161606988 + (CA)n Simple_repeat Simple_repeat 1 23 0 183 343 43 0 chr3 56430274 56430344 -161606814 + MIR SINE MIR 118 190 -72 4862 119 31 25 chr3 56430643 56430991 -161606167 - L1PB3 LINE L1 0 6154 5810 351 0 0 0 chr3 56430991 56431030 -161606128 + (CA)n Simple_repeat Simple_repeat 2 40 0 4862 119 31 25 chr3 56431030 56431479 -161605679 - L1PB3 LINE L1 -344 5810 5352 649 189 118 0 chr3 56431668 56431821 -161605337 - L1MC1 LINE L1 0 6333 6163 2295 81 3 0 chr3 56432859 56433154 -161604004 + AluSp SINE Alu 1 296 -17 240 35 0 0 chr3 56433155 56433184 -161603974 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 333 0 0 0 chr3 56433183 56433220 -161603938 + (CA)n Simple_repeat Simple_repeat 2 38 0 197 322 17 0 chr3 56433327 56433386 -161603772 - MIR SINE MIR -202 60 1 257 267 200 0 chr3 56433551 56433656 -161603502 + MIR SINE MIR 8 133 -129 353 278 48 24 chr3 56434061 56434187 -161602971 - L2 LINE L2 -261 3011 2883 338 286 131 29 chr3 56434455 56434630 -161602528 + LTR33A LTR ERVL 110 302 -219 1327 244 101 51 chr3 56434652 56435374 -161601784 + L1MC5 LINE L1 7154 7911 -50 610 220 32 133 chr3 56435467 56435788 -161601370 - L1M4 LINE L1 -3642 2504 2231 1511 133 40 63 chr3 56435788 56436088 -161601070 + AluJb SINE Alu 3 295 -17 610 220 32 133 chr3 56436088 56436171 -161600987 - L1M4 LINE L1 -3915 2231 2141 2338 203 59 34 chr3 56436328 56436402 -161600756 - L1M4 LINE L1 -944 5202 5131 2382 56 23 3 chr3 56436402 56436706 -161600452 - AluY SINE Alu -1 310 1 2338 203 59 34 chr3 56436706 56437277 -161599881 - L1M4 LINE L1 -1015 5131 4541 2314 38 3 7 chr3 56437377 56437666 -161599492 - AluY SINE Alu -23 288 1 336 24 0 0 chr3 56438064 56438105 -161599053 + (CA)n Simple_repeat Simple_repeat 2 42 0 2158 113 3 0 chr3 56438126 56438428 -161598730 + AluSp SINE Alu 1 303 -10 288 0 0 0 chr3 56438428 56438460 -161598698 + (TA)n Simple_repeat Simple_repeat 2 33 0 203 320 0 0 chr3 56438547 56438597 -161598561 - L2 LINE L2 -219 3053 3004 326 253 64 12 chr3 56438794 56438936 -161598222 + L1ME4a LINE L1 5544 5706 -415 2262 81 0 40 chr3 56441067 56441388 -161595770 + AluSg SINE Alu 1 308 -2 2010 87 38 0 chr3 56443306 56443595 -161593563 + AluSq SINE Alu 1 300 -13 22 0 0 0 chr3 56443750 56443772 -161593386 + AT_rich Low_complexity Low_complexity 1 22 0 2050 118 0 10 chr3 56446374 56446678 -161590480 - AluSg SINE Alu -9 301 1 262 235 145 60 chr3 56447208 56447442 -161589716 + L1ME4a LINE L1 5852 6105 -16 280 313 269 0 chr3 56447800 56447982 -161589176 + MIR SINE MIR 21 251 -11 865 197 5 30 chr3 56448055 56448253 -161588905 - AluJo SINE Alu -17 295 103 1606 142 117 3 chr3 56448300 56448616 -161588542 - L1MB4 LINE L1 -1 6179 5828 2358 60 0 3 chr3 56448617 56448796 -161588362 - AluY SINE Alu -12 299 120 186 43 0 0 chr3 56448796 56448819 -161588339 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2358 60 0 3 chr3 56448819 56448939 -161588219 - AluY SINE Alu -191 120 1 294 277 118 8 chr3 56449001 56449120 -161588038 + L1ME4a LINE L1 5791 5922 -199 2105 113 0 25 chr3 56449244 56449563 -161587595 + AluSx SINE Alu 1 311 -1 2226 234 68 10 chr3 56449567 56449979 -161587179 + L1MC4 LINE L1 7170 7629 -413 2350 87 6 0 chr3 56449979 56450290 -161586868 + AluSp SINE Alu 1 313 0 2226 234 68 10 chr3 56450290 56450479 -161586679 + L1MC4 LINE L1 7629 7806 -236 789 139 76 19 chr3 56450503 56450661 -161586497 + LTR8A LTR ERV1 128 294 -433 642 165 45 141 chr3 56450661 56450903 -161586255 + L1MC4 LINE L1 7820 8038 -4 1440 265 33 18 chr3 56450911 56451360 -161585798 + L1MB5 LINE L1 5473 5928 -246 * 3434 204 50 34 chr3 56450972 56451539 -161585619 + L1MD2 LINE L1 5540 6125 -234 3259 147 55 58 chr3 56451539 56452268 -161584890 + LTR8A LTR ERV1 1 727 0 3434 204 50 34 chr3 56452268 56452497 -161584661 + L1MD2 LINE L1 6125 6349 -10 2695 128 43 2 chr3 56452641 56453056 -161584102 - MSTB1 LTR MaLR 0 432 1 638 301 93 9 chr3 56453212 56453428 -161583730 + MIR SINE MIR 29 262 0 183 316 18 0 chr3 56453480 56453537 -161583621 - MIR SINE MIR -110 152 95 2301 94 0 0 chr3 56453702 56454010 -161583148 + AluSg1 SINE Alu 1 308 -1 1562 123 21 196 chr3 56454035 56454279 -161582879 - Tigger2 DNA MER2_type 0 2718 2433 1556 198 0 0 chr3 56454279 56454552 -161582606 + AluJo SINE Alu 1 273 -39 1562 123 21 196 chr3 56454552 56454839 -161582319 - Tigger2 DNA MER2_type -285 2433 1 537 281 140 5 chr3 56454853 56455074 -161582084 - MLT1L LTR MaLR -49 566 316 1370 98 5 0 chr3 56455370 56455600 -161581558 - AluSg/x SINE Alu 0 326 96 230 333 11 0 chr3 56455672 56455762 -161581396 - MLT1I LTR MaLR 0 409 319 198 128 0 0 chr3 56456887 56456926 -161580232 + (T)n Simple_repeat Simple_repeat 1 39 0 223 224 15 45 chr3 56458634 56458701 -161578457 - MER5A DNA MER1_type -105 84 20 604 211 119 53 chr3 56458846 56459073 -161578085 - L1ME1 LINE L1 -18 6148 5907 1266 154 0 26 chr3 56459087 56459320 -161577838 + AluJb SINE Alu 84 310 -2 1649 203 30 43 chr3 56459331 56459650 -161577508 - L1MD2 LINE L1 -451 5977 5662 2160 98 0 37 chr3 56459650 56459975 -161577183 + AluSq SINE Alu 1 313 0 1649 203 30 43 chr3 56459975 56460054 -161577104 - L1MD2 LINE L1 -766 5662 5584 236 313 99 15 chr3 56460196 56460327 -161576831 - L1ME LINE L1 -5923 147 6 735 112 0 0 chr3 56461298 56461396 -161575762 + AluS SINE Alu 2 99 -214 3238 218 61 18 chr3 56461723 56462946 -161574212 - L1MD2 LINE L1 -1670 4545 3376 2187 121 0 0 chr3 56462946 56463251 -161573907 - AluSg SINE Alu -5 305 1 3238 218 61 18 chr3 56463251 56463548 -161573610 - L1MD2 LINE L1 -2839 3376 1559 188 130 22 0 chr3 56463618 56463664 -161573494 + (TA)n Simple_repeat Simple_repeat 1 47 0 2389 150 59 34 chr3 56464853 56465293 -161571865 + LTR32 LTR ERVL 15 465 -6 312 275 50 67 chr3 56465794 56465914 -161571244 - L2 LINE L2 -16 3297 3180 773 124 28 11 chr3 56468315 56468492 -161568666 + GA-rich Low_complexity Low_complexity 1 180 0 349 261 45 0 chr3 56468560 56468671 -161568487 - LTR33A LTR ERVL -77 446 331 2062 103 3 13 chr3 56469107 56469409 -161567749 + AluSx SINE Alu 1 299 -13 1607 232 126 19 chr3 56469735 56470204 -161566954 - LTR40a LTR ERVL 0 519 1 1147 224 96 0 chr3 56470204 56470513 -161566645 - HERVL40 LTR ERVL 0 5530 2794 306 273 102 75 chr3 56470511 56470698 -161566460 - HERV16 LTR ERVL -358 4665 4474 * 668 276 70 11 chr3 56470890 56471075 -161566083 - HERV16 LTR ERVL -4166 1364 1169 319 272 37 59 chr3 56471561 56471697 -161565461 + MLT1H LTR MaLR 124 256 -293 285 175 117 58 chr3 56471825 56471928 -161565230 + MLT1I LTR MaLR 278 386 -23 709 99 243 0 chr3 56472346 56472457 -161564701 + AluSq/x SINE Alu 2 139 -173 976 161 0 19 chr3 56473903 56474064 -161563094 - FRAM SINE Alu -8 158 1 371 331 81 49 chr3 56475134 56475478 -161561680 - L1ME LINE L1 -474 5647 5293 36 40 0 0 chr3 56475496 56475546 -161561612 + AT_rich Low_complexity Low_complexity 1 50 0 1889 115 0 0 chr3 56475897 56476158 -161561000 + AluSx SINE Alu 1 261 -51 3442 310 58 15 chr3 56476207 56477503 -161559655 - HERV16 LTR ERVL -1900 3096 1750 1995 314 48 33 chr3 56477499 56478341 -161558817 - HERV16 LTR ERVL -3906 1090 237 * 3317 206 15 23 chr3 56478341 56478581 -161558577 - L1M4c LINE L1 -4632 2014 1774 3749 114 41 2 chr3 56478581 56479088 -161558070 - MER1A DNA MER1_type 0 527 1 3317 206 15 23 chr3 56479088 56479595 -161557563 - L1M4c LINE L1 -4872 1774 1273 2391 98 59 28 chr3 56479639 56480027 -161557131 + LTR38B LTR ERV1 211 610 0 577 256 85 36 chr3 56480236 56480459 -161556699 - L1M4c LINE L1 -6296 246 13 329 371 33 0 chr3 56480474 56480687 -161556471 - HERV16 LTR ERVL -4755 241 22 1171 292 64 47 chr3 56480692 56480857 -161556301 - LTR16B LTR ERVL -4 460 299 1220 180 95 37 chr3 56480857 56481152 -161556006 - AluJo SINE Alu 0 312 1 1171 292 64 47 chr3 56481152 56481438 -161555720 - LTR16B LTR ERVL -165 299 1 2317 116 0 0 chr3 56481460 56481771 -161555387 - AluSx SINE Alu -1 311 1 2339 109 0 6 chr3 56483074 56483385 -161553773 - AluSc SINE Alu 0 309 1 3162 166 2 18 chr3 56483451 56483945 -161553213 - MER66B LTR ERV1 0 486 1 898 223 25 10 chr3 56484028 56484225 -161552933 - MER3 DNA MER1_type -9 200 1 268 252 81 36 chr3 56484441 56484552 -161552606 - MIR SINE MIR -18 244 129 258 253 40 19 chr3 56484928 56485017 -161552141 - MIR SINE MIR -122 86 16 1667 192 103 15 chr3 56485126 56485516 -161551642 - MER74A LTR ERVL -14 544 121 335 318 99 7 chr3 56486152 56486303 -161550855 - MIR SINE MIR -6 256 92 2421 160 43 19 chr3 56486469 56486937 -161550221 - L1MB7 LINE L1 -25 6159 5681 2089 165 90 53 chr3 56486935 56487523 -161549635 + L1MCa LINE L1 1337 1946 -4480 * 196 196 54 0 chr3 56539066 56539122 -161498036 + MIR SINE MIR 85 143 -65 246 228 0 0 chr3 56540834 56540892 -161496266 + (CAGAGA)n Simple_repeat Simple_repeat 1 58 0 208 386 0 0 chr3 56541844 56541945 -161495213 + (CA)n Simple_repeat Simple_repeat 1 101 0 205 316 179 0 chr3 56542803 56542898 -161494260 + MIR SINE MIR 35 146 -62 197 289 22 78 chr3 56543629 56543719 -161493439 + L3 LINE CR1 1337 1421 -156 203 333 145 50 chr3 56543869 56544166 -161492992 - L2 LINE L2 -82 3190 2866 219 69 0 0 chr3 56544277 56544306 -161492852 + (TCC)n Simple_repeat Simple_repeat 2 30 0 226 303 147 0 chr3 56544868 56544977 -161492181 + MIR3 SINE MIR 5 129 -79 225 285 83 69 chr3 56546946 56547090 -161490068 - MIR3 SINE MIR -33 175 30 233 383 11 6 chr3 56549204 56549379 -161487779 + (CTGGGG)n Simple_repeat Simple_repeat 2 177 0 1841 144 10 23 chr3 56550300 56550599 -161486559 + AluJo SINE Alu 1 295 -17 1900 133 35 0 chr3 56550600 56550886 -161486272 + AluSx SINE Alu 2 297 -15 1769 159 48 3 chr3 56551307 56551596 -161485562 + AluSx SINE Alu 11 312 0 371 268 43 22 chr3 56551837 56551975 -161485183 - MIR3 SINE MIR -3 205 65 231 354 12 12 chr3 56552446 56552610 -161484548 + G-rich Low_complexity Low_complexity 4 167 0 22 0 0 0 chr3 56552679 56552701 -161484457 + GC_rich Low_complexity Low_complexity 1 22 0 269 276 0 40 chr3 56553011 56553163 -161483995 + G-rich Low_complexity Low_complexity 1 146 0 22 0 0 0 chr3 56553280 56553302 -161483856 + GC_rich Low_complexity Low_complexity 1 22 0 294 29 0 0 chr3 56553988 56554023 -161483135 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 36 40 0 0 chr3 56554024 56554074 -161483084 + GC_rich Low_complexity Low_complexity 1 50 0 27 0 0 0 chr3 56554125 56554152 -161483006 + GC_rich Low_complexity Low_complexity 1 27 0 263 27 0 27 chr3 56554159 56554196 -161482962 + (TCCC)n Simple_repeat Simple_repeat 2 37 0 234 0 0 0 chr3 56554204 56554230 -161482928 + (CTCG)n Simple_repeat Simple_repeat 4 29 0 33 43 0 0 chr3 56554241 56554288 -161482870 + GC_rich Low_complexity Low_complexity 1 47 0 259 239 87 33 chr3 56555614 56555706 -161481452 + MIR3 SINE MIR 82 178 -30 371 252 84 0 chr3 56556195 56556302 -161480856 - MIR SINE MIR -10 252 137 2455 52 0 0 chr3 56557210 56557501 -161479657 - AluY SINE Alu -20 291 1 243 273 61 0 chr3 56557627 56557693 -161479465 - MIR SINE MIR -100 108 39 2045 108 37 0 chr3 56557806 56558101 -161479057 + AluSx SINE Alu 1 306 -6 492 293 73 27 chr3 56558153 56558566 -161478592 + L1MDa LINE L1 1279 1710 -4830 818 265 35 9 chr3 56558614 56558713 -161478445 + L1MDa LINE L1 1693 1788 -4933 3596 139 28 43 chr3 56558713 56559381 -161477777 + L1MC1 LINE L1 5676 6333 0 818 265 35 9 chr3 56559381 56559620 -161477538 + L1MDa LINE L1 1788 2391 -4330 1465 189 85 38 chr3 56559657 56560129 -161477029 - Charlie1b DNA MER1_type -29 494 1 305 273 39 45 chr3 56560130 56560158 -161477000 + L1MDa LINE L1 2383 2410 -4130 1240 194 117 14 chr3 56560158 56560441 -161476717 + AluJb SINE Alu 1 312 0 305 273 39 45 chr3 56560441 56560558 -161476600 + L1MDa LINE L1 2410 3568 -2972 2136 114 7 0 chr3 56560558 56560856 -161476302 + AluSx SINE Alu 1 300 -12 2184 94 0 29 chr3 56561581 56561888 -161475270 - AluSq SINE Alu -4 309 12 555 111 0 25 chr3 56561889 56561970 -161475188 - AluSq/x SINE Alu -203 110 32 982 209 0 25 chr3 56562419 56562615 -161474543 + AluJo SINE Alu 112 302 -10 287 238 0 38 chr3 56563143 56563223 -161473935 - MER5A DNA MER1_type -80 109 33 896 272 52 35 chr3 56564190 56564480 -161472678 + AluSx SINE Alu 11 305 -7 1014 154 0 0 chr3 56564553 56564709 -161472449 + FRAM SINE Alu 20 175 -1 386 291 69 72 chr3 56564842 56565431 -161471727 - L1MC4a LINE L1 -456 5665 5398 304 293 24 0 chr3 56565446 56565528 -161471630 - L1MC4a LINE L1 -795 5351 5268 214 188 0 0 chr3 56566757 56566807 -161470351 + MIR SINE MIR 111 161 -47 478 283 151 10 chr3 56567645 56567722 -161469436 - MIR SINE MIR 0 262 197 2217 82 13 3 chr3 56567722 56568026 -161469132 - AluSp SINE Alu -6 307 1 478 283 151 10 chr3 56568026 56568153 -161469005 - MIR SINE MIR -65 197 29 236 278 7 0 chr3 56568915 56569059 -161468099 + (TGG)n Simple_repeat Simple_repeat 1 145 0 214 232 36 0 chr3 56570364 56570420 -161466738 - L2 LINE L2 -284 2988 2931 1342 166 0 9 chr3 56572089 56572318 -161464840 + AluJo SINE Alu 85 311 -1 197 191 24 0 chr3 56572858 56572900 -161464258 - MIR SINE MIR -56 152 110 345 262 0 40 chr3 56573360 56573509 -161463649 + GA-rich Low_complexity Low_complexity 1 143 0 222 267 42 8 chr3 56573574 56573694 -161463464 + GA-rich Low_complexity Low_complexity 2 125 0 280 342 33 0 chr3 56574189 56574309 -161462849 - MIR SINE MIR -63 145 22 347 302 70 8 chr3 56574463 56574592 -161462566 + MIR SINE MIR 80 216 -46 2481 71 3 0 chr3 56574676 56574987 -161462171 + AluSp SINE Alu 1 312 -1 209 191 0 21 chr3 56575701 56575748 -161461410 + (CGGGG)n Simple_repeat Simple_repeat 3 48 0 196 73 0 49 chr3 56576135 56576176 -161460982 + (CCCCG)n Simple_repeat Simple_repeat 5 43 0 186 133 0 0 chr3 56580992 56581022 -161456136 + (A)n Simple_repeat Simple_repeat 1 30 0 198 308 98 23 chr3 56582205 56582338 -161454820 - L2 LINE L2 -549 2765 2623 275 303 40 20 chr3 56584164 56584263 -161452895 + MIR SINE MIR 30 130 -132 335 228 8 0 chr3 56584415 56584538 -161452620 + (TG)n Simple_repeat Simple_repeat 1 124 0 216 143 0 0 chr3 56584837 56584879 -161452279 + (TG)n Simple_repeat Simple_repeat 1 42 0 354 341 86 48 chr3 56584887 56585471 -161451687 - L1 LINE L1 -2699 3447 2842 222 136 0 0 chr3 56585472 56585516 -161451642 + (TG)n Simple_repeat Simple_repeat 1 44 0 739 273 48 0 chr3 56585534 56585743 -161451415 + Charlie8 DNA MER1_type 17 235 -2182 195 162 0 0 chr3 56585874 56585911 -161451247 + (TG)n Simple_repeat Simple_repeat 1 37 0 240 336 14 7 chr3 56585939 56586082 -161451076 + (TG)n Simple_repeat Simple_repeat 1 144 0 219 340 128 0 chr3 56587125 56587219 -161449939 + L2 LINE L2 3191 3296 -17 3422 199 114 37 chr3 56588103 56588150 -161449008 - L1MD2 LINE L1 -1 6341 6299 2034 138 0 3 chr3 56588150 56588461 -161448697 - AluSx SINE Alu -2 310 1 3422 199 114 37 chr3 56588461 56589250 -161447908 - L1MD2 LINE L1 -43 6299 5572 2329 42 7 55 chr3 56589250 56589560 -161447598 + AluY SINE Alu 1 295 -16 3422 199 114 37 chr3 56589560 56590121 -161447037 - L1MD2 LINE L1 -770 5572 4832 1256 138 0 10 chr3 56590123 56590319 -161446839 + AluJb SINE Alu 86 279 -33 186 71 0 0 chr3 56590330 56590358 -161446800 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 442 277 51 38 chr3 56590378 56590613 -161446545 - L1MD2 LINE L1 -1336 4793 4556 543 330 74 0 chr3 56590617 56590926 -161446232 - L1MD2 LINE L1 -2605 3524 3193 1669 149 37 17 chr3 56591721 56591855 -161445303 + AluSx SINE Alu 1 131 -181 2162 83 7 0 chr3 56591855 56592143 -161445015 + AluSc SINE Alu 6 295 -14 1669 149 37 17 chr3 56592143 56592291 -161444867 + AluSx SINE Alu 131 292 -20 662 0 13 0 chr3 56592291 56592369 -161444789 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 1669 149 37 17 chr3 56592369 56592380 -161444778 + AluSx SINE Alu 292 301 -11 470 271 193 27 chr3 56592594 56592967 -161444191 - L1ME3A LINE L1 -227 5943 5509 1220 151 151 68 chr3 56593085 56593363 -161443795 - AluJb SINE Alu -1 301 1 406 135 60 83 chr3 56593875 56594008 -161443150 - L1MB8 LINE L1 -13 6165 6036 925 121 8 0 chr3 56594076 56594208 -161442950 + FLAM_C SINE Alu 1 133 -10 342 302 116 17 chr3 56594217 56594397 -161442761 - L1MD2 LINE L1 -4775 1535 1127 2033 203 178 6 chr3 56594398 56594880 -161442278 + MLT1F1 LTR MaLR 1 565 -2 323 210 57 16 chr3 56594894 56595018 -161442140 - L1ME3A LINE L1 0 6170 6042 594 231 90 55 chr3 56595043 56595355 -161441803 - L1MD2 LINE L1 -4866 1253 931 1465 137 69 20 chr3 56595363 56595669 -161441489 - MER44D DNA MER2_type -3 606 16 447 321 37 56 chr3 56595692 56595907 -161441251 - L1MD2 LINE L1 -5209 910 700 331 331 34 47 chr3 56596181 56596329 -161440829 - L1MD2 LINE L1 -5430 689 544 309 307 127 45 chr3 56596362 56596606 -161440552 - L1MD2 LINE L1 -5648 471 208 254 261 14 58 chr3 56596655 56596793 -161440365 - L1MD2 LINE L1 -5984 135 4 2166 122 0 0 chr3 56596801 56597097 -161440061 + AluSx SINE Alu 1 296 -16 875 353 86 14 chr3 56597101 56597589 -161439569 - L1MEd LINE L1 -4931 1188 666 212 255 0 0 chr3 56599022 56599069 -161438089 + (CATA)n Simple_repeat Simple_repeat 2 48 0 253 319 0 52 chr3 56600641 56600776 -161436382 + G-rich Low_complexity Low_complexity 1 128 0 1634 115 127 12 chr3 56601797 56602078 -161435080 + AluSx SINE Alu 1 310 0 238 248 79 63 chr3 56603019 56603146 -161434012 - MIR SINE MIR -22 186 69 182 261 109 0 chr3 56604192 56604238 -161432920 - MIR SINE MIR -165 97 47 191 174 130 0 chr3 56604887 56604933 -161432225 + MIR SINE MIR 89 140 -68 1579 135 34 0 chr3 56605250 56605487 -161431671 + AluSx SINE Alu 50 294 -18 573 115 0 0 chr3 56605672 56605750 -161431408 - MADE1 DNA Mariner 0 80 3 448 350 59 3 chr3 56605770 56606090 -161431068 + L1MEc LINE L1 1466 1803 -4593 913 182 13 0 chr3 56606091 56606250 -161430908 + FRAM SINE Alu 12 172 -4 804 279 106 35 chr3 56606250 56606590 -161430568 + L1MEc LINE L1 1847 2210 -4186 2285 101 0 13 chr3 56606984 56607301 -161429857 + AluSq SINE Alu 1 313 0 735 164 0 0 chr3 56607303 56607413 -161429745 - FLAM_A SINE Alu -32 110 1 222 227 15 61 chr3 56608624 56608690 -161428468 - MIR3 SINE MIR -6 202 140 280 352 6 55 chr3 56609325 56609507 -161427651 + L1ME4a LINE L1 5556 5728 -393 356 289 81 61 chr3 56610971 56611168 -161425990 + L1ME4a LINE L1 5769 5969 -152 1074 114 13 0 chr3 56611168 56611326 -161425832 - AluY SINE Alu -17 294 135 251 266 4 0 chr3 56611677 56611748 -161425410 + MIR SINE MIR 88 140 -68 445 191 8 38 chr3 56613114 56613245 -161423913 + L1M4 LINE L1 4572 4698 -1448 308 316 45 23 chr3 56613728 56613861 -161423297 - MIR SINE MIR -96 166 31 198 0 0 0 chr3 56615761 56615783 -161421375 + (T)n Simple_repeat Simple_repeat 1 22 0 1727 162 20 26 chr3 56615809 56616112 -161421046 + AluJb SINE Alu 1 301 -11 475 336 72 40 chr3 56616179 56616402 -161420756 + L2 LINE L2 3082 3311 -2 2388 74 0 10 chr3 56618522 56618832 -161418326 + AluY SINE Alu 1 307 -4 320 279 34 73 chr3 56621331 56621510 -161415648 - MIR3 SINE MIR -7 201 30 231 253 115 0 chr3 56622237 56622324 -161414834 + L2 LINE L2 3003 3099 -173 293 267 69 0 chr3 56625398 56625499 -161411659 - MIR3 SINE MIR -19 189 82 359 228 43 11 chr3 56625816 56625908 -161411250 - MIR SINE MIR -59 149 55 255 237 21 97 chr3 56626035 56626128 -161411030 + MIR3 SINE MIR 114 199 -9 255 303 149 11 chr3 56630357 56630545 -161406613 - L2 LINE L2 -175 3097 2884 21 71 0 0 chr3 56641951 56641993 -161395165 + GC_rich Low_complexity Low_complexity 1 42 0 227 283 20 40 chr3 56646223 56646322 -161390836 + MIR SINE MIR 19 115 -147 2259 79 14 0 chr3 56647440 56647730 -161389428 + AluSp SINE Alu 1 294 -19 263 324 176 7 chr3 56647832 56647974 -161389184 + MIR SINE MIR 87 252 -10 1182 184 80 25 chr3 56648332 56648571 -161388587 + AluJo SINE Alu 31 282 -30 359 249 186 51 chr3 56651823 56652000 -161385158 + MIR SINE MIR 20 220 -42 248 286 57 38 chr3 56652730 56652835 -161384323 + MIR3 SINE MIR 99 205 -3 1679 55 0 0 chr3 56654480 56654680 -161382478 + AluSc SINE Alu 1 200 -109 883 103 0 16 chr3 56654681 56654807 -161382351 + AluSg/x SINE Alu 156 279 -33 360 0 0 0 chr3 56654807 56654847 -161382311 + (CA)n Simple_repeat Simple_repeat 1 40 0 1515 167 89 7 chr3 56654860 56655130 -161382028 + AluJo SINE Alu 5 296 -16 2315 84 0 3 chr3 56655732 56656030 -161381128 + AluSg SINE Alu 1 297 -13 1032 227 83 10 chr3 56656235 56656535 -161380623 - MER2 DNA MER2_type -23 322 1 232 311 7 22 chr3 56656535 56656670 -161380488 - L1M2 LINE L1 -4554 2295 2163 1877 146 0 7 chr3 56656673 56656804 -161380354 + AluSx SINE Alu 3 133 -179 2094 93 0 4 chr3 56656804 56657116 -161380042 + AluSg SINE Alu 1 311 0 1877 146 0 7 chr3 56657116 56657270 -161379888 + AluSx SINE Alu 133 287 -25 6921 67 2 4 chr3 56658427 56659582 -161377576 + L1PA7 LINE L1 5000 6152 -2 639 257 57 44 chr3 56659582 56659679 -161377479 + L1MB7 LINE L1 5873 5967 -217 2316 76 3 10 chr3 56659679 56659980 -161377178 + AluY SINE Alu 13 311 0 1632 54 5 0 chr3 56659980 56660184 -161376974 + L1PA4 LINE L1 5948 6152 -3 639 257 57 44 chr3 56660184 56660381 -161376777 + L1MB7 LINE L1 5966 6172 -12 238 292 7 44 chr3 56660415 56660552 -161376606 - AluYa8 SINE Alu -10 290 159 256 298 116 33 chr3 56660818 56660939 -161376219 - L2 LINE L2 -3 3310 3180 213 220 0 0 chr3 56661330 56661380 -161375778 + CT-rich Low_complexity Low_complexity 2 51 0 193 222 20 0 chr3 56663203 56663302 -161373856 + (CA)n Simple_repeat Simple_repeat 2 102 0 359 278 17 6 chr3 56663351 56663524 -161373634 + (CA)n Simple_repeat Simple_repeat 2 176 0 234 193 0 0 chr3 56663720 56663777 -161373381 + (TG)n Simple_repeat Simple_repeat 2 58 0 288 330 139 0 chr3 56665071 56665186 -161371972 + MIR SINE MIR 50 180 -82 1334 174 58 33 chr3 56667071 56667384 -161369774 + AluJo SINE Alu 23 312 0 620 238 12 0 chr3 56669605 56669862 -161367296 + CT-rich Low_complexity Low_complexity 1 260 0 183 264 0 0 chr3 56669879 56669932 -161367226 + CT-rich Low_complexity Low_complexity 4 56 0 273 293 34 87 chr3 56670113 56670321 -161366837 - MIR3 SINE MIR -11 197 1 510 283 156 11 chr3 56670927 56671107 -161366051 - L2 LINE L2 -1 3312 3107 3533 171 24 51 chr3 56671186 56671342 -161365816 + L1MB3 LINE L1 5214 5373 -810 2125 99 3 0 chr3 56671342 56671652 -161365506 + AluSx SINE Alu 1 311 0 3533 171 24 51 chr3 56671652 56672305 -161364853 + L1MB3 LINE L1 5373 6023 -160 654 276 84 45 chr3 56672322 56672608 -161364550 - LTR16C LTR ERVL 0 491 195 558 272 75 0 chr3 56672802 56672975 -161364183 - L2 LINE L2 -606 2708 2523 233 248 9 0 chr3 56674152 56674265 -161362893 + (TG)n Simple_repeat Simple_repeat 1 114 0 262 267 52 52 chr3 56676188 56676304 -161360854 + L3 LINE CR1 1412 1527 -50 327 96 0 0 chr3 56676701 56676753 -161360405 + (TCCC)n Simple_repeat Simple_repeat 2 53 0 186 301 88 44 chr3 56677657 56677770 -161359388 - L3 LINE CR1 -68 1509 1392 2113 116 0 13 chr3 56679151 56679454 -161357704 + AluSx SINE Alu 1 299 -13 205 257 0 27 chr3 56681332 56681406 -161355752 + (CGGGG)n Simple_repeat Simple_repeat 5 76 0 2123 27 0 34 chr3 56682234 56682526 -161354632 - SVA Other Other -1103 283 2 234 0 0 0 chr3 56682532 56682558 -161354600 + (GGGAGA)n Simple_repeat Simple_repeat 2 27 0 2260 232 144 22 chr3 56682632 56683488 -161353670 - L1ME3A LINE L1 -1 6161 5139 2264 112 0 0 chr3 56683488 56683793 -161353365 - AluSq SINE Alu -8 305 1 2260 232 144 22 chr3 56683793 56684058 -161353100 - L1ME3A LINE L1 -1023 5139 4908 201 74 0 0 chr3 56684168 56684195 -161352963 + (TAG)n Simple_repeat Simple_repeat 1 27 0 221 352 33 0 chr3 56686583 56686674 -161350484 - MIR SINE MIR -119 143 50 4844 79 10 41 chr3 56687355 56687947 -161349211 - PABL_A LTR ERV1 0 660 51 333 0 0 0 chr3 56687947 56687984 -161349174 + (TG)n Simple_repeat Simple_repeat 2 38 0 2139 94 0 7 chr3 56687985 56688282 -161348876 - AluSx SINE Alu -13 299 5 4844 79 10 41 chr3 56688282 56688368 -161348790 - PABL_A LTR ERV1 -608 52 1 270 214 0 0 chr3 56688407 56688463 -161348695 - LTR67 LTR ERVL -6 551 496 307 309 61 83 chr3 56688638 56688868 -161348290 - LTR67 LTR ERVL -236 321 97 1643 150 36 15 chr3 56689132 56689406 -161347752 - AluJb SINE Alu -32 280 1 181 318 0 100 chr3 56689569 56689679 -161347479 - MER5A DNA MER1_type 0 189 91 391 306 105 10 chr3 56690764 56690973 -161346185 + L3 LINE CR1 750 978 -599 2109 77 14 3 chr3 56691014 56691301 -161345857 - AluSq SINE Alu -21 292 3 364 309 28 84 chr3 56692992 56693170 -161343988 + MIR SINE MIR 20 187 -75 723 150 0 8 chr3 56693994 56694114 -161343044 - AluSq/x SINE Alu -192 120 2 598 146 0 41 chr3 56694126 56694249 -161342909 - LOR1b LTR ERV1 -94 367 250 1687 144 27 80 chr3 56694249 56694398 -161342760 - L1M3 LINE L1 -554 5626 5471 837 138 0 36 chr3 56694398 56694536 -161342622 - FLAM_C SINE Alu 0 133 1 1687 144 27 80 chr3 56694536 56694862 -161342296 - L1M3 LINE L1 -709 5471 5175 818 160 0 8 chr3 56694874 56694999 -161342159 - FLAM_C SINE Alu -17 126 3 340 219 0 0 chr3 56695001 56695097 -161342061 - L1M3 LINE L1 -959 5187 5092 603 221 26 106 chr3 56696651 56696791 -161340367 + MER3 DNA MER1_type 1 151 -58 1451 89 84 5 chr3 56696791 56697004 -161340154 + MER30 DNA MER1_type 1 230 0 1640 172 0 11 chr3 56697005 56697290 -161339868 + AluJb SINE Alu 24 305 -7 603 221 26 106 chr3 56697290 56697373 -161339785 + MER3 DNA MER1_type 150 208 -1 1260 130 0 20 chr3 56697655 56697855 -161339303 + AluJo SINE Alu 1 196 -116 273 334 106 19 chr3 56698505 56698741 -161338417 + MIR SINE MIR 3 255 -7 229 261 102 34 chr3 56699222 56699310 -161337848 + MER5A DNA MER1_type 72 165 -24 288 297 210 17 chr3 56699429 56699901 -161337257 - L2 LINE L2 -12 3301 2714 320 240 40 48 chr3 56699974 56700099 -161337059 - L2 LINE L2 -905 2409 2286 779 253 176 0 chr3 56700517 56700829 -161336329 - L1M4 LINE L1 -2557 3589 3223 510 233 54 8 chr3 56702728 56702857 -161334301 + MIR SINE MIR 57 191 -71 209 274 95 24 chr3 56704525 56704609 -161332549 + MIR SINE MIR 107 196 -66 2253 107 3 0 chr3 56704670 56704979 -161332179 + AluSg SINE Alu 1 310 0 1538 149 17 57 chr3 56705239 56705540 -161331618 - AluJo SINE Alu -23 289 1 1248 106 14 19 chr3 56705661 56705868 -161331290 + L1MA7 LINE L1 5730 5935 -356 354 151 0 17 chr3 56705868 56705939 -161331219 + Alu SINE Alu 1 56 -244 760 181 0 32 chr3 56705939 56706094 -161331064 + AluJb SINE Alu 163 312 0 1225 164 142 26 chr3 56706094 56706404 -161330754 + L1MA7 LINE L1 5942 6287 -4 1953 78 0 0 chr3 56706423 56706678 -161330480 + AluY SINE Alu 1 255 -56 194 320 48 19 chr3 56709659 56709762 -161327396 - MIR3 SINE MIR -10 198 93 182 310 17 0 chr3 56711855 56711913 -161325245 + L3 LINE CR1 1413 1471 -106 2279 68 0 32 chr3 56712239 56712549 -161324609 - AluY SINE Alu -9 302 3 459 163 12 0 chr3 56712564 56712644 -161324514 - MER51A LTR ERV1 -83 551 471 217 224 75 75 chr3 56712813 56712920 -161324238 + MIR SINE MIR 53 159 -49 338 263 10 30 chr3 56713649 56713748 -161323410 - MIR SINE MIR 0 262 166 436 234 129 8 chr3 56713822 56713946 -161323212 - L2 LINE L2 0 3313 3175 363 125 0 0 chr3 56713966 56714022 -161323136 - MADE1 DNA Mariner 0 80 25 399 254 67 8 chr3 56714052 56714186 -161322972 - L2 LINE L2 -152 3161 3020 250 177 177 0 chr3 56714190 56714252 -161322906 + MER58 DNA MER1_type 27 99 -287 851 153 0 0 chr3 56714252 56714376 -161322782 + FLAM_C SINE Alu 1 124 -19 432 0 0 0 chr3 56714377 56714425 -161322733 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 1248 210 61 13 chr3 56714433 56714743 -161322415 - MLT1D LTR MaLR -133 372 48 6978 175 21 21 chr3 56714750 56716647 -161320511 - L1M3 LINE L1 -492 5688 3794 1161 298 0 129 chr3 56716648 56716990 -161320168 + AluJb SINE Alu 1 298 -14 223 138 11 92 chr3 56717909 56717996 -161319162 + (CCCCG)n Simple_repeat Simple_repeat 2 81 0 25 0 0 0 chr3 56718008 56718033 -161319125 + GC_rich Low_complexity Low_complexity 1 25 0 212 255 0 0 chr3 56718224 56718271 -161318887 - MIR SINE MIR -67 141 95 2448 56 3 0 chr3 56719154 56719457 -161317701 + AluSc SINE Alu 1 304 -5 1026 144 0 0 chr3 56721298 56721451 -161315707 - AluSg/x SINE Alu -10 302 150 409 118 15 15 chr3 56721577 56721645 -161315513 - AluS SINE Alu -243 69 2 1966 113 226 5 chr3 56721646 56722054 -161315104 + L1MB3 LINE L1 5685 6182 -1 432 277 52 56 chr3 56722572 56722785 -161314373 - MIR SINE MIR -43 219 8 1948 112 23 16 chr3 56722909 56723212 -161313946 - AluSg SINE Alu -5 305 1 2408 52 20 3 chr3 56723254 56723559 -161313599 - AluY SINE Alu -1 310 1 2392 76 0 9 chr3 56723565 56723880 -161313278 - AluSx SINE Alu 0 312 1 276 77 0 0 chr3 56724613 56724652 -161312506 + (CCCCG)n Simple_repeat Simple_repeat 5 43 0 204 40 0 0 chr3 56724693 56724718 -161312440 + (A)n Simple_repeat Simple_repeat 1 25 0 2499 53 0 0 chr3 56724928 56725231 -161311927 + AluSc SINE Alu 1 303 -6 7366 33 3 138 chr3 56726235 56727434 -161309724 + SVA Other Other 363 1405 0 317 93 0 0 chr3 56728609 56728652 -161308506 + LTR23 LTR ERV1 320 362 -75 186 43 0 0 chr3 56728652 56728675 -161308483 + (GAAA)n Simple_repeat Simple_repeat 3 25 0 2013 140 0 9 chr3 56728677 56728992 -161308166 + AluSx SINE Alu 1 312 0 395 188 0 0 chr3 56729183 56729247 -161307911 - AluS SINE Alu -236 64 1 1516 185 26 26 chr3 56729761 56730063 -161307095 + AluJb SINE Alu 1 302 0 658 293 42 33 chr3 56730431 56730765 -161306393 - L1MEc LINE L1 -5561 835 499 610 264 17 6 chr3 56730805 56730979 -161306179 - L1MEc LINE L1 -6094 302 127 649 112 0 10 chr3 56930986 56931084 -161106074 + AluSq SINE Alu 140 236 -77 186 118 0 0 chr3 56932321 56932355 -161104803 + (CA)n Simple_repeat Simple_repeat 2 35 0 325 24 0 0 chr3 56932605 56932646 -161104512 - MER41A-int LTR ERV1 -3232 4305 4265 701 102 0 0 chr3 56932651 56932749 -161104409 + AluS SINE Alu 2 99 -214 2306 127 26 26 chr3 56932749 56932927 -161104231 - MER41A-int LTR ERV1 -7369 387 210 2138 143 10 0 chr3 56932927 56933234 -161103924 - AluSx SINE Alu -2 310 1 2306 127 26 26 chr3 56933234 56933442 -161103716 - MER41A-int LTR ERV1 -7545 211 1 271 154 58 0 chr3 56933473 56933525 -161103633 - MER41A-int LTR ERV1 -5891 55 1 2814 94 0 0 chr3 56933525 56933906 -161103252 - MER41A LTR ERV1 0 554 174 404 245 0 0 chr3 56934064 56934158 -161103000 + THE1A LTR MaLR 262 355 0 410 343 65 12 chr3 56935114 56935359 -161101799 + MIR SINE MIR 5 262 0 612 271 92 42 chr3 56936526 56936810 -161100348 - HERVL40 LTR ERVL -1723 3807 3510 643 229 132 19 chr3 56936810 56937015 -161100143 - HERVL40 LTR ERVL -3193 2337 2110 1121 182 40 12 chr3 56937424 56937671 -161099487 - AluSx SINE Alu 0 312 59 3857 24 0 16 chr3 56937771 56938194 -161098964 + SVA Other Other 971 1386 0 2292 100 7 3 chr3 56938214 56938515 -161098643 + AluSp SINE Alu 1 302 -11 222 37 0 0 chr3 56938597 56938624 -161098534 + (A)n Simple_repeat Simple_repeat 1 27 0 2362 94 13 0 chr3 56938689 56938998 -161098160 - AluSp SINE Alu 0 313 1 2553 79 0 0 chr3 56939007 56939311 -161097847 - AluY SINE Alu -7 304 1 329 272 11 0 chr3 56939523 56939615 -161097543 + MIR SINE MIR 39 131 -77 896 150 0 0 chr3 56939662 56939802 -161097356 - MER5A DNA MER1_type 0 189 50 1100 75 8 0 chr3 56939803 56939936 -161097222 - AluSq/x SINE Alu -175 138 5 555 184 72 8 chr3 56940445 56940570 -161096588 - FLAM_A SINE Alu 0 133 1 978 102 0 0 chr3 56940588 56940716 -161096442 + AluSg/x SINE Alu 179 306 -4 224 299 145 0 chr3 56941066 56941205 -161095953 - MIR SINE MIR -63 145 5 1975 151 10 16 chr3 56941355 56941667 -161095491 + AluJo SINE Alu 1 310 -2 312 298 11 0 chr3 56942471 56942565 -161094593 + CT-rich Low_complexity Low_complexity 3 97 0 2184 79 9 76 chr3 56942626 56942954 -161094204 + AluSp SINE Alu 3 308 -5 319 247 31 0 chr3 56943052 56943149 -161094009 + L1 LINE L1 4607 4706 -1440 2060 121 36 0 chr3 56943358 56943639 -161093519 + AluSx SINE Alu 1 291 -21 995 86 0 0 chr3 56944249 56944366 -161092792 + AluSq/x SINE Alu 1 117 -196 297 250 31 100 chr3 56944410 56944570 -161092588 - MIR SINE MIR -94 168 20 2331 95 10 0 chr3 56944637 56944931 -161092227 + AluSx SINE Alu 1 297 -15 518 173 73 9 chr3 56945250 56945360 -161091798 - LTR54 LTR ERV1 -313 197 81 1348 105 0 3 chr3 56945360 56945607 -161091551 - AluSq SINE Alu -2 311 2 398 95 0 32 chr3 56945607 56945670 -161091488 - LTR54B LTR ERV1 -415 83 23 5195 204 36 14 chr3 56945670 56946501 -161090657 - MER21B-int LTR ERV1 -3089 1102 240 1977 133 0 48 chr3 56946501 56946676 -161090482 - AluJb SINE Alu -12 300 145 2262 123 3 0 chr3 56946676 56946986 -161090172 - AluSp SINE Alu -2 311 1 1977 133 0 48 chr3 56946986 56947125 -161090033 - AluJb SINE Alu -167 145 1 5195 204 36 14 chr3 56947125 56947370 -161089788 - MER21B-int LTR ERV1 -3951 240 2 1001 168 55 20 chr3 56947396 56947598 -161089560 - MER21B LTR ERV1 -3 860 652 1395 123 0 0 chr3 56947599 56947778 -161089380 - AluSx SINE Alu -133 179 1 728 191 0 0 chr3 56947781 56947922 -161089236 - FLAM_C SINE Alu -1 142 2 1305 155 9 13 chr3 56947927 56948153 -161089005 - MER21B LTR ERV1 -550 313 89 287 167 0 0 chr3 56948259 56948313 -161088845 + L1ME1 LINE L1 5914 5967 -217 2518 80 3 0 chr3 56948314 56948615 -161088543 + AluSp SINE Alu 1 302 -11 1171 146 0 0 chr3 56948615 56948786 -161088372 + AluSg/x SINE Alu 132 302 -8 611 255 0 7 chr3 56948786 56948935 -161088223 + L1ME1 LINE L1 5960 6107 -59 249 302 0 42 chr3 56949214 56949310 -161087848 + MIR3 SINE MIR 71 162 -46 359 208 50 20 chr3 56949415 56949516 -161087642 - MER103 DNA DNA -49 117 14 2674 40 0 0 chr3 56950205 56950504 -161086654 + AluY SINE Alu 1 299 -12 771 139 15 44 chr3 56950643 56950780 -161086378 - FLAM_C SINE Alu 0 133 1 2456 42 0 3 chr3 56950893 56951200 -161085958 - AluY SINE Alu 0 306 1 850 179 25 19 chr3 56951261 56951423 -161085735 + AluJb SINE Alu 137 299 -13 207 258 45 0 chr3 56951862 56951928 -161085230 - L2 LINE L2 -1 3271 3203 751 247 83 70 chr3 56952082 56952278 -161084880 - L2 LINE L2 -1244 2070 1867 2043 84 56 25 chr3 56952278 56952563 -161084595 + AluSx SINE Alu 3 296 -16 751 247 83 70 chr3 56952563 56952666 -161084492 - L2 LINE L2 -1447 1867 1767 621 104 0 0 chr3 56952774 56952870 -161084288 + MER41-int LTR ERV1 4216 4311 -1635 2017 125 17 0 chr3 56952870 56953158 -161084000 - AluSc SINE Alu -16 293 1 283 183 141 14 chr3 56953164 56953275 -161083883 - AluSg/x SINE Alu 0 321 202 2416 90 0 3 chr3 56953548 56953858 -161083300 - AluY SINE Alu -2 309 1 1029 163 0 6 chr3 56954021 56954187 -161082971 + MER45A DNA AcHobo 14 178 0 224 319 42 46 chr3 56954561 56954740 -161082418 + MIR SINE MIR 19 192 -62 1765 132 4 4 chr3 56956569 56956812 -161080346 + AluSg SINE Alu 1 243 -67 2511 73 0 0 chr3 56956829 56957129 -161080029 + AluY SINE Alu 1 300 -11 2335 88 0 3 chr3 56957681 56957997 -161079161 - AluSq SINE Alu 0 315 1 956 118 0 39 chr3 56958377 56958530 -161078628 + AluSc SINE Alu 163 309 0 21 36 0 0 chr3 56958785 56958813 -161078345 + GC_rich Low_complexity Low_complexity 1 28 0 2846 84 38 90 chr3 56958864 56959366 -161077792 + SVA Other Other 393 868 -518 525 162 19 29 chr3 56959839 56959944 -161077214 + AluSq/x SINE Alu 2 105 -207 1949 124 4 0 chr3 56959962 56960228 -161076930 - AluSq SINE Alu -16 297 31 2318 101 13 0 chr3 56960249 56960557 -161076601 - AluSx SINE Alu 0 312 1 536 99 49 0 chr3 56960935 56961016 -161076142 + AluS SINE Alu 2 86 -227 1537 238 33 87 chr3 56961020 56961643 -161075515 + LTR9 LTR ERV1 19 612 0 1911 246 74 6 chr3 56961653 56961842 -161075316 + REP3 LTR ERV 4 179 -383 291 28 0 0 chr3 56961842 56961878 -161075280 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2005 95 42 0 chr3 56961885 56962149 -161075009 - AluSx SINE Alu -37 275 1 1911 246 74 6 chr3 56962149 56962451 -161074707 + REP3 LTR ERV 184 537 -25 780 163 115 48 chr3 56962470 56962518 -161074640 + Charlie1 DNA MER1_type 2404 2447 -314 234 0 0 0 chr3 56962518 56962544 -161074614 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2073 95 15 11 chr3 56962548 56962821 -161074337 - AluSq SINE Alu -35 278 5 780 163 115 48 chr3 56962821 56963037 -161074121 + Charlie1 DNA MER1_type 2449 2691 -70 1737 150 27 59 chr3 56963037 56963127 -161074031 - LTR8 LTR ERV1 0 691 600 2601 53 0 0 chr3 56963127 56963428 -161073730 + AluY SINE Alu 1 301 -10 1737 150 27 59 chr3 56963428 56963761 -161073397 - LTR8 LTR ERV1 -91 600 313 2024 82 89 4 chr3 56963761 56964041 -161073117 + AluSp SINE Alu 1 304 -9 3001 6 0 0 chr3 56964049 56964365 -161072793 + AluYb8 SINE Alu 1 316 -2 1139 118 0 54 chr3 56964380 56964566 -161072592 + AluSg/x SINE Alu 121 296 -16 1231 190 81 32 chr3 56964592 56964861 -161072297 - LTR8A LTR ERV1 -402 325 38 3713 131 39 6 chr3 56964861 56965485 -161071673 - LTR9B LTR ERV1 0 644 1 1231 190 81 32 chr3 56965485 56965525 -161071633 - LTR8A LTR ERV1 -689 38 1 486 145 0 0 chr3 56965525 56965599 -161071559 + Charlie1 DNA MER1_type 2688 2761 0 323 247 0 12 chr3 56966350 56966431 -161070727 + Charlie5 DNA MER1_type 16 95 -2517 2263 63 11 3 chr3 56966442 56966726 -161070432 - AluSg SINE Alu -22 288 3 23 0 0 0 chr3 56966728 56966751 -161070407 + AT_rich Low_complexity Low_complexity 1 23 0 1567 122 28 8 chr3 56966761 56967008 -161070150 - AluSx SINE Alu -60 252 1 975 111 7 0 chr3 56967016 56967151 -161070007 - AluSg/x SINE Alu -20 292 157 2385 64 0 7 chr3 56967262 56967586 -161069572 + AluY SINE Alu 1 322 0 2720 44 14 2 chr3 56967605 56968103 -161069055 + LTR10C LTR ERV1 1 590 -1 875 75 0 0 chr3 56968104 56968224 -161068934 + MER4E LTR ERV1 660 779 0 2451 98 0 0 chr3 56968245 56968552 -161068606 - AluSq SINE Alu 0 313 7 1920 119 4 0 chr3 56968569 56968829 -161068329 - AluSq SINE Alu 0 313 53 3822 59 8 8 chr3 56968829 56969339 -161067819 + LTR10D LTR ERV1 3 512 -1 401 151 9 35 chr3 56969340 56969400 -161067758 - AluSq SINE Alu -245 58 47 2069 127 6 35 chr3 56969400 56969715 -161067443 - AluSx SINE Alu -6 306 1 401 151 9 35 chr3 56969715 56969761 -161067397 - AluSq SINE Alu -256 47 1 270 204 0 0 chr3 56969737 56969786 -161067372 + LTR47B LTR ERVL 26 74 -369 * 1660 165 30 4 chr3 56969812 56970079 -161067079 + AluJo SINE Alu 24 297 -15 1986 159 3 0 chr3 56970081 56970389 -161066769 + AluSx SINE Alu 1 309 -3 2404 76 0 16 chr3 56970412 56970715 -161066443 + AluY SINE Alu 1 298 -13 2276 115 13 0 chr3 56970888 56971192 -161065966 + AluSx SINE Alu 1 308 -4 2241 144 0 0 chr3 56971528 56971840 -161065318 + AluSx SINE Alu 1 312 0 869 94 0 0 chr3 56971864 56971970 -161065188 + FLAM_C SINE Alu 13 118 -25 2175 122 0 19 chr3 56972228 56972539 -161064619 + AluSq SINE Alu 1 305 -8 296 276 239 0 chr3 56972719 56972853 -161064305 + MIR3 SINE MIR 18 183 -25 1924 141 0 45 chr3 56972859 56973171 -161063987 - AluJo SINE Alu -14 298 1 1035 124 11 56 chr3 56974321 56974499 -161062659 - AluSx SINE Alu -142 170 1 2062 108 44 0 chr3 56974525 56974822 -161062336 + AluY SINE Alu 1 310 -1 941 216 141 23 chr3 56974827 56975132 -161062026 - MSTD LTR MaLR -55 341 1 703 179 0 0 chr3 56975168 56975285 -161061873 + FLAM_A SINE Alu 16 132 -10 2279 81 41 3 chr3 56975287 56975582 -161061576 + AluY SINE Alu 1 306 -5 225 208 19 0 chr3 56975583 56975636 -161061522 + (CATATA)n Simple_repeat Simple_repeat 4 57 0 476 290 61 96 chr3 56975796 56975978 -161061180 - L1MEd LINE L1 -4779 1350 1163 2195 111 16 16 chr3 56975978 56976285 -161060873 + AluSc SINE Alu 2 308 -1 2238 105 13 3 chr3 56976295 56976600 -161060558 + AluSq SINE Alu 1 308 -5 476 290 61 96 chr3 56976600 56976799 -161060359 - L1MEd LINE L1 -4975 1154 976 2571 84 0 0 chr3 56976801 56977109 -161060049 - AluSp SINE Alu -5 308 1 1541 118 0 0 chr3 56977160 56977363 -161059795 - AluSg/x SINE Alu -23 289 87 2362 107 0 3 chr3 56977363 56977670 -161059488 - AluSq SINE Alu -6 307 1 1868 107 71 4 chr3 56977672 56977952 -161059206 - AluSx SINE Alu -13 299 1 1999 159 0 6 chr3 56977955 56978269 -161058889 - AluJb SINE Alu 0 312 1 1009 150 0 46 chr3 56978320 56978493 -161058665 + AluJo SINE Alu 13 177 -135 2385 94 0 0 chr3 56978547 56978844 -161058314 + AluSq SINE Alu 1 297 -16 309 308 37 0 chr3 56978949 56979056 -161058102 - MIR3 SINE MIR -53 155 45 804 146 0 0 chr3 56980461 56980591 -161056567 - FLAM_C SINE Alu -3 130 1 1468 226 85 35 chr3 56980598 56980762 -161056396 - L1MC3 LINE L1 -1 8041 7887 234 0 0 0 chr3 56980762 56980788 -161056370 + (CA)n Simple_repeat Simple_repeat 2 27 0 1468 226 85 35 chr3 56980788 56980905 -161056253 - L1MC3 LINE L1 -155 7887 7777 2067 111 0 4 chr3 56980905 56981184 -161055974 + AluSg SINE Alu 5 282 -28 190 0 0 0 chr3 56981184 56981205 -161055953 + (TAA)n Simple_repeat Simple_repeat 2 180 0 1468 226 85 35 chr3 56981205 56981437 -161055721 - L1MC3 LINE L1 -265 7777 7512 2300 125 3 0 chr3 56981445 56981757 -161055401 - AluSq SINE Alu 0 313 1 343 258 266 8 chr3 56982025 56982149 -161055009 + MER5A DNA MER1_type 4 159 -30 212 337 142 56 chr3 56982274 56982541 -161054617 + L2 LINE L2 2933 3222 -50 1832 175 0 10 chr3 56982708 56983022 -161054136 - AluJb SINE Alu -1 311 1 199 269 75 0 chr3 56983027 56983094 -161054064 - MIR3 SINE MIR -48 160 89 789 150 0 0 chr3 56983230 56983343 -161053815 - FLAM_A SINE Alu -14 128 16 2493 93 3 0 chr3 56983367 56983677 -161053481 + AluSp SINE Alu 1 311 -2 24 0 0 0 chr3 56984179 56984203 -161052955 + AT_rich Low_complexity Low_complexity 1 24 0 846 166 28 7 chr3 56984318 56984463 -161052695 + AluJb SINE Alu 142 289 -23 559 164 19 29 chr3 56984603 56984707 -161052451 - AluSq/x SINE Alu -208 104 2 21 0 0 0 chr3 56986073 56986094 -161051064 + AT_rich Low_complexity Low_complexity 1 21 0 192 321 71 82 chr3 56987453 56987637 -161049521 + L2 LINE L2 2804 2985 -328 * 204 231 185 81 chr3 56987627 56987800 -161049358 + L2 LINE L2 2734 2924 -390 2172 111 7 3 chr3 56987830 56988119 -161049039 - AluSc SINE Alu -19 290 1 1903 69 0 0 chr3 56988122 56988353 -161048805 - AluSg/x SINE Alu -13 297 67 447 211 46 46 chr3 56988360 56988469 -161048689 + L2 LINE L2 3195 3303 -10 2245 90 10 3 chr3 56988583 56988884 -161048274 + AluSg1 SINE Alu 1 303 -6 1764 183 28 0 chr3 56989146 56989436 -161047722 + AluJb SINE Alu 1 298 -14 300 269 19 19 chr3 56989503 56989611 -161047547 + AluSp SINE Alu 13 120 -183 2038 133 7 3 chr3 56989775 56990068 -161047090 + AluSx SINE Alu 1 294 -18 2338 96 13 0 chr3 56990070 56990371 -161046787 + AluSp SINE Alu 1 305 -8 1259 132 0 0 chr3 56990371 56990545 -161046613 + AluSp SINE Alu 134 307 -6 1751 208 52 52 chr3 56990550 56990612 -161046546 + L1ME1 LINE L1 5666 5727 -439 1964 157 7 0 chr3 56990612 56990912 -161046246 + AluJb SINE Alu 1 302 -10 2102 78 64 18 chr3 56990912 56991194 -161045964 + AluSg SINE Alu 1 295 -15 1751 208 52 52 chr3 56991194 56991626 -161045532 + L1ME1 LINE L1 5725 6161 -5 2359 104 7 0 chr3 56991645 56991952 -161045206 + AluSc SINE Alu 1 309 0 1946 124 4 0 chr3 56991973 56992239 -161044919 + AluSq SINE Alu 31 297 -16 2427 77 13 0 chr3 56992241 56992539 -161044619 + AluSp SINE Alu 1 302 -11 511 143 13 0 chr3 56992548 56992625 -161044533 + AluS SINE Alu 2 79 -233 619 181 175 19 chr3 56992632 56992792 -161044366 + MER5A DNA MER1_type 1 185 -4 393 295 114 26 chr3 56992842 56993035 -161044123 - MIR SINE MIR -42 220 11 475 354 17 6 chr3 56993895 56994070 -161043088 - MIR SINE MIR -64 198 22 2355 98 0 0 chr3 56994614 56994909 -161042249 - AluSx SINE Alu -17 295 1 2080 130 33 0 chr3 56995319 56995618 -161041540 - AluSx SINE Alu -3 309 1 2239 103 4 0 chr3 56995747 56996056 -161041102 - AluSq SINE Alu 0 310 1 691 173 0 0 chr3 56996058 56996168 -161040990 - AluJo/FLAM SINE Alu -201 111 2 1613 162 47 34 chr3 56996172 56996469 -161040689 - AluJo SINE Alu -11 301 1 312 189 81 40 chr3 56996732 56996806 -161040352 - L1ME3 LINE L1 -4 6158 6082 2282 112 0 0 chr3 56996809 56997104 -161040054 - AluSx SINE Alu -17 295 1 1125 129 0 0 chr3 56997262 56997417 -161039741 + AluSq SINE Alu 142 296 -17 2374 92 7 3 chr3 56997418 56997722 -161039436 + AluSp SINE Alu 1 305 -8 219 197 76 45 chr3 56998134 56998200 -161038958 + L2 LINE L2 3016 3083 -189 1907 199 39 122 chr3 56998446 56999060 -161038098 + MLT1F1 LTR MaLR 1 563 -4 2350 102 3 3 chr3 56999142 56999445 -161037713 + AluSp SINE Alu 1 303 -10 225 0 0 0 chr3 56999476 56999501 -161037657 + (CAGGC)n Simple_repeat Simple_repeat 4 28 0 2735 45 0 0 chr3 56999570 56999878 -161037280 + AluY SINE Alu 1 308 -3 2360 114 0 0 chr3 56999966 57000264 -161036894 - AluSx SINE Alu -14 298 1 196 326 138 47 chr3 57000285 57000561 -161036597 + L2 LINE L2 2996 3296 -17 1699 157 70 33 chr3 57000563 57000862 -161036296 + AluJb SINE Alu 2 311 -1 2244 92 20 13 chr3 57000950 57001253 -161035905 + AluSx SINE Alu 1 305 -7 1919 163 10 0 chr3 57001702 57002002 -161035156 - AluJo SINE Alu -3 309 7 216 0 0 0 chr3 57002003 57002027 -161035131 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1549 62 41 5 chr3 57002027 57002222 -161034936 - AluSp SINE Alu -27 286 85 32 43 0 0 chr3 57002315 57002361 -161034797 + AT_rich Low_complexity Low_complexity 1 46 0 1994 122 4 0 chr3 57002461 57002732 -161034426 + AluSx SINE Alu 30 301 -11 306 0 0 0 chr3 57002919 57002953 -161034205 + (TG)n Simple_repeat Simple_repeat 1 34 0 691 162 0 0 chr3 57002958 57003057 -161034101 - AluJ SINE Alu -30 282 184 710 144 48 40 chr3 57003058 57003183 -161033975 - AluJ SINE Alu -185 127 2 2425 78 0 3 chr3 57003220 57003515 -161033643 + AluY SINE Alu 1 294 -17 738 165 9 0 chr3 57003528 57003643 -161033515 + FLAM_C SINE Alu 5 120 -23 2394 102 0 6 chr3 57003655 57003968 -161033190 + AluSx SINE Alu 2 312 0 2289 92 10 0 chr3 57003977 57004269 -161032889 + AluSp SINE Alu 1 295 -18 30 27 0 0 chr3 57004272 57004309 -161032849 + AT_rich Low_complexity Low_complexity 1 37 0 2249 107 7 7 chr3 57005480 57005790 -161031368 + AluSx SINE Alu 1 310 -2 255 219 311 26 chr3 57006643 57006659 -161030499 - MIR SINE MIR -3 259 249 2178 109 7 0 chr3 57006659 57006971 -161030187 + AluSx SINE Alu 1 314 0 255 219 311 26 chr3 57006971 57007104 -161030054 - MIR SINE MIR -13 249 66 339 169 121 0 chr3 57007210 57007293 -161029865 - L2 LINE L2 -18 3254 3162 985 191 0 0 chr3 57007415 57007572 -161029586 + FAM SINE Alu 2 158 -17 224 316 202 36 chr3 57007663 57007916 -161029242 + L2 LINE L2 3019 3313 0 21 0 0 0 chr3 57008836 57008857 -161028301 + AT_rich Low_complexity Low_complexity 1 21 0 1395 151 16 83 chr3 57008873 57009017 -161028141 + AluJb SINE Alu 13 126 -186 450 0 0 0 chr3 57009017 57009067 -161028091 + (CA)n Simple_repeat Simple_repeat 1 50 0 1395 151 16 83 chr3 57009067 57009234 -161027924 + AluJb SINE Alu 126 303 -9 2137 75 12 100 chr3 57009279 57009610 -161027548 - AluSx SINE Alu -10 302 1 1500 215 129 62 chr3 57009639 57010378 -161026780 + L1MC5 LINE L1 6865 7652 -309 2322 98 0 3 chr3 57010385 57010690 -161026468 + AluSx SINE Alu 2 305 -7 3479 176 116 12 chr3 57010739 57010834 -161026324 - MER21B LTR ERV1 -8 855 771 216 0 0 0 chr3 57010834 57010858 -161026300 + (CAAG)n Simple_repeat Simple_repeat 3 26 0 3479 176 116 12 chr3 57010858 57011536 -161025622 - MER21B LTR ERV1 -92 771 1 24 53 0 0 chr3 57011584 57011622 -161025536 + AT_rich Low_complexity Low_complexity 1 38 0 2092 115 3 14 chr3 57011748 57012043 -161025115 + AluSq SINE Alu 1 292 -21 1394 128 5 0 chr3 57012043 57012239 -161024919 + AluSg/x SINE Alu 98 294 -16 888 104 0 16 chr3 57012249 57012374 -161024784 + L1MA1 LINE L1 6180 6302 0 189 0 0 0 chr3 57012377 57012398 -161024760 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 854 126 0 49 chr3 57012407 57012550 -161024608 + AluJo SINE Alu 1 136 -176 234 91 0 0 chr3 57012550 57012583 -161024575 + MSTB2 LTR MaLR 413 445 -12 2388 92 3 0 chr3 57012594 57012897 -161024261 + AluY SINE Alu 1 304 -7 551 175 21 0 chr3 57012933 57013030 -161024128 + MER2 DNA MER2_type 1 99 -246 1178 139 0 6 chr3 57013030 57013195 -161023963 + AluJb SINE Alu 1 164 -148 361 265 86 0 chr3 57013195 57013312 -161023846 + MER103 DNA DNA 37 163 -3 285 392 16 0 chr3 57013426 57013551 -161023607 - MIR SINE MIR -61 147 21 2332 90 23 0 chr3 57013563 57013864 -161023294 - AluSx SINE Alu -2 310 3 1647 104 156 11 chr3 57014602 57014872 -161022286 - AluSg1 SINE Alu 0 309 1 2077 109 0 4 chr3 57014903 57015179 -161021979 + AluSx SINE Alu 1 275 -37 204 40 0 0 chr3 57015183 57015208 -161021950 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 241 227 113 85 chr3 57015899 57015962 -161021196 + MIR SINE MIR 118 178 -84 1616 95 0 0 chr3 57015962 57016162 -161020996 + AluSg/x SINE Alu 80 279 -31 468 0 0 0 chr3 57016162 57016214 -161020944 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 241 227 113 85 chr3 57016214 57016290 -161020868 + MIR SINE MIR 177 262 0 323 240 40 0 chr3 57016407 57016482 -161020676 - MIR SINE MIR -77 185 108 611 186 42 8 chr3 57017017 57017135 -161020023 - AluJb SINE Alu -15 297 176 1534 153 0 4 chr3 57017143 57017378 -161019780 + AluJb SINE Alu 51 284 -28 282 87 0 0 chr3 57017385 57017431 -161019727 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 311 293 91 34 chr3 57017740 57018003 -161019155 + L2 LINE L2 2807 3084 -188 36 23 0 0 chr3 57018026 57018069 -161019089 + AT_rich Low_complexity Low_complexity 1 43 0 2480 74 0 0 chr3 57018073 57018370 -161018788 + AluY SINE Alu 1 297 -14 1812 73 0 5 chr3 57018397 57018616 -161018542 - AluSg SINE Alu -92 218 1 692 207 0 0 chr3 57018616 57018732 -161018426 - AluJo/FLAM SINE Alu -195 117 2 2086 129 3 7 chr3 57018739 57019042 -161018116 - AluSg SINE Alu -8 302 1 2064 105 7 0 chr3 57019453 57019730 -161017428 - AluY SINE Alu -32 279 1 2192 101 31 0 chr3 57019812 57020127 -161017031 - AluSg SINE Alu 0 324 1 375 294 41 14 chr3 57020208 57020354 -161016804 + LTR67 LTR ERVL 15 164 -393 240 316 58 0 chr3 57020647 57020751 -161016407 + MIR SINE MIR 18 127 -81 2191 125 0 13 chr3 57020845 57021158 -161016000 + AluSc SINE Alu 1 309 0 263 310 75 0 chr3 57021269 57021456 -161015702 + L1M4 LINE L1 2913 3113 -3033 * 503 196 250 16 chr3 57021435 57021619 -161015539 + L1MDa LINE L1 275 501 -6039 1249 183 141 57 chr3 57021622 57021998 -161015160 + L1MDa LINE L1 840 1183 -5357 810 175 0 0 chr3 57021998 57022124 -161015034 + FLAM_C SINE Alu 2 127 -6 210 37 0 0 chr3 57022124 57022151 -161015007 + (CA)n Simple_repeat Simple_repeat 2 28 0 1249 183 141 57 chr3 57022151 57022233 -161014925 + L1MDa LINE L1 1182 1338 -5202 247 280 67 0 chr3 57022573 57022648 -161014510 + L2 LINE L2 3193 3272 0 1813 123 60 11 chr3 57023014 57023305 -161013853 + AluSx SINE Alu 1 304 0 2137 119 6 25 chr3 57023870 57024188 -161012970 + AluSx SINE Alu 1 312 0 265 24 48 0 chr3 57024517 57024559 -161012599 + (TA)n Simple_repeat Simple_repeat 1 44 0 237 23 47 23 chr3 57024620 57024663 -161012495 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2428 94 0 16 chr3 57024670 57024988 -161012170 + AluSq SINE Alu 1 313 0 214 338 124 14 chr3 57025110 57025255 -161011903 - MIR3 SINE MIR -14 194 34 291 331 90 0 chr3 57026495 57026640 -161010518 - MIR SINE MIR -26 236 79 1706 173 28 0 chr3 57027363 57027646 -161009512 - AluJo SINE Alu -21 291 1 26 0 0 0 chr3 57028072 57028098 -161009060 + AT_rich Low_complexity Low_complexity 1 26 0 568 180 180 0 chr3 57028098 57028198 -161008960 - FLAM_C SINE Alu -15 118 1 397 131 16 0 chr3 57028308 57028369 -161008789 + U7 snRNA snRNA 2 63 0 219 69 0 0 chr3 57028369 57028398 -161008760 + (A)n Simple_repeat Simple_repeat 1 29 0 285 254 82 22 chr3 57029250 57029384 -161007774 + L1ME2 LINE L1 5799 5940 -230 394 250 269 10 chr3 57029787 57029995 -161007163 - MIR SINE MIR 0 262 1 469 251 151 6 chr3 57030620 57030799 -161006359 - MIR SINE MIR -34 228 24 1481 168 66 18 chr3 57031391 57031677 -161005481 + AluJb SINE Alu 1 300 -12 1658 110 39 43 chr3 57032048 57032359 -161004799 + AluSg SINE Alu 1 310 0 1479 183 3 39 chr3 57033108 57033420 -161003738 + AluJb SINE Alu 1 301 -11 603 153 0 0 chr3 57033421 57033506 -161003652 + AluS SINE Alu 2 86 -226 407 287 17 9 chr3 57033506 57033621 -161003537 + FLAM_A SINE Alu 17 132 -10 2288 70 7 3 chr3 57034268 57034566 -161002592 + AluSp SINE Alu 3 301 -12 201 208 26 26 chr3 57035951 57036028 -161001130 + (CCG)n Simple_repeat Simple_repeat 2 78 0 397 266 97 8 chr3 57037170 57037294 -160999864 - MIR SINE MIR 0 262 128 759 139 0 58 chr3 57037380 57037517 -160999641 + FLAM_C SINE Alu 2 130 -3 2318 44 10 0 chr3 57037807 57038102 -160999056 + AluY SINE Alu 1 298 -13 549 251 128 14 chr3 57039280 57039491 -160997667 + L1ME3A LINE L1 5676 5910 -260 912 80 0 0 chr3 57039498 57039611 -160997547 + AluSx SINE Alu 13 125 -188 305 276 0 13 chr3 57039614 57039690 -160997468 - L1MC4 LINE L1 -1351 6691 6617 * 377 265 8 55 chr3 57039658 57039785 -160997373 + L1MC4 LINE L1 6543 6702 -1140 327 194 45 0 chr3 57039733 57039800 -160997358 - L1MCa LINE L1 -4362 2064 1995 * 244 150 50 0 chr3 57039805 57039865 -160997293 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 1199 112 0 0 chr3 57039866 57040035 -160997123 + AluSx SINE Alu 127 295 -17 778 211 14 53 chr3 57040038 57040122 -160997036 + L1ME3A LINE L1 5966 6052 -118 1523 173 0 73 chr3 57040122 57040318 -160996840 - AluJo SINE Alu -6 306 142 2121 110 0 3 chr3 57040318 57040608 -160996550 + AluSg SINE Alu 1 289 -21 1523 173 0 73 chr3 57040608 57040741 -160996417 - AluJo SINE Alu -170 142 1 778 211 14 53 chr3 57040741 57040864 -160996294 + L1ME3A LINE L1 6052 6165 -5 240 232 101 0 chr3 57040878 57040947 -160996211 + L2 LINE L2 1705 1780 -1534 1936 78 61 37 chr3 57040947 57041045 -160996113 + AluSg SINE Alu 1 95 -215 2147 114 0 3 chr3 57041045 57041353 -160995805 + AluSg SINE Alu 1 307 -3 1936 78 61 37 chr3 57041353 57041549 -160995609 + AluSg SINE Alu 95 302 -8 399 174 0 0 chr3 57041549 57041618 -160995540 + PABL_A-int LTR ERV1 3248 3316 -1699 2173 98 0 0 chr3 57041619 57041929 -160995229 + AluSp SINE Alu 1 310 0 735 226 0 0 chr3 57041938 57042093 -160995065 + FRAM SINE Alu 1 146 -30 395 246 80 7 chr3 57042289 57042427 -160994731 + LTR16C LTR ERVL 156 303 -188 308 146 0 0 chr3 57042573 57042614 -160994544 - Alu SINE Alu -261 41 1 1422 154 33 129 chr3 57042616 57042793 -160994365 - MER58B DNA MER1_type -2088 332 140 1587 153 68 4 chr3 57042793 57042916 -160994242 + AluSx SINE Alu 1 115 -197 198 0 0 0 chr3 57042916 57042938 -160994220 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 1587 153 68 4 chr3 57042938 57043095 -160994063 + AluSx SINE Alu 115 299 -13 1422 154 33 129 chr3 57043095 57043177 -160993981 - MER58B DNA MER1_type -2280 140 115 815 130 17 0 chr3 57043177 57043292 -160993866 + FLAM_C SINE Alu 1 117 -16 1422 154 33 129 chr3 57043292 57043395 -160993763 - MER58B DNA MER1_type -2305 115 4 1889 108 72 0 chr3 57043540 57043818 -160993340 + AluSq SINE Alu 1 298 -15 34 0 0 0 chr3 57044432 57044466 -160992692 + AT_rich Low_complexity Low_complexity 1 34 0 1922 100 48 7 chr3 57044821 57045111 -160992047 - AluSq SINE Alu -11 302 1 1468 168 18 28 chr3 57045131 57045416 -160991742 - AluJb SINE Alu -24 288 7 2269 82 3 0 chr3 57045676 57045970 -160991188 + AluSx SINE Alu 1 295 -17 1613 162 33 4 chr3 57046041 57046313 -160990845 + AluSx SINE Alu 1 280 -32 207 0 0 0 chr3 57046313 57046336 -160990822 + (CAAT)n Simple_repeat Simple_repeat 4 26 0 729 178 15 15 chr3 57046484 57046619 -160990539 - AluJb SINE Alu -176 136 2 2393 67 0 0 chr3 57046679 57046978 -160990180 - AluY SINE Alu -12 299 1 1789 139 10 10 chr3 57046996 57047284 -160989874 - AluSp SINE Alu -25 288 1 618 179 185 0 chr3 57048072 57048234 -160988924 - L1MC5 LINE L1 -45 7916 7725 292 310 45 30 chr3 57048241 57048410 -160988748 - MIR SINE MIR -58 150 18 2416 79 0 0 chr3 57049108 57049413 -160987745 - AluSq SINE Alu -8 305 1 279 143 111 0 chr3 57049521 57049584 -160987574 - L1ME2 LINE L1 0 6164 6095 1912 145 6 31 chr3 57049669 57049856 -160987302 - L1MA6 LINE L1 -4 6296 6121 2071 125 0 0 chr3 57049856 57050152 -160987006 + AluSx SINE Alu 1 296 -16 1912 145 6 31 chr3 57050152 57050315 -160986843 - L1MA6 LINE L1 -179 6121 5955 817 129 7 50 chr3 57050323 57050462 -160986696 - FLAM_C SINE Alu 0 133 1 2105 112 0 0 chr3 57050487 57050782 -160986376 - AluSx SINE Alu -17 295 1 369 229 28 9 chr3 57050783 57050892 -160986266 - L1M4 LINE L1 -892 5254 5144 969 82 7 7 chr3 57050926 57051061 -160986097 - AluSq/x SINE Alu -177 135 1 785 99 0 0 chr3 57051274 57051375 -160985783 + AluSc SINE Alu 148 248 -61 1260 162 14 0 chr3 57051375 57051585 -160985573 + AluSg/x SINE Alu 83 295 -15 896 239 116 60 chr3 57051619 57051771 -160985387 - L1M4 LINE L1 -1150 4996 4854 1856 140 20 7 chr3 57051771 57052064 -160985094 + AluJb SINE Alu 1 297 -15 896 239 116 60 chr3 57052064 57052193 -160984965 - L1M4 LINE L1 -1292 4854 4734 2099 114 3 0 chr3 57052193 57052500 -160984658 - AluY SINE Alu -3 308 1 896 239 116 60 chr3 57052500 57052627 -160984531 - L1M4 LINE L1 -1412 4734 4616 2155 77 27 3 chr3 57052627 57052925 -160984233 - AluY SINE Alu -6 305 1 896 239 116 60 chr3 57052925 57053015 -160984143 - L1M4 LINE L1 -1530 4616 4468 1821 164 7 0 chr3 57053041 57053340 -160983818 - AluSx SINE Alu -11 301 1 725 154 157 4 chr3 57053352 57053502 -160983656 - L1MC3 LINE L1 -141 7829 7703 2481 45 0 10 chr3 57053502 57053810 -160983348 - AluY SINE Alu -5 306 2 725 154 157 4 chr3 57053810 57053864 -160983294 - L1MC3 LINE L1 -267 7703 7506 1363 194 4 0 chr3 57053867 57054119 -160983039 + AluJo SINE Alu 50 302 -10 1040 156 6 12 chr3 57054119 57054286 -160982872 + AluJo/FRAM SINE Alu 137 302 0 3089 235 30 26 chr3 57054293 57055185 -160981973 - L1M4 LINE L1 -1301 4845 3950 2028 130 7 0 chr3 57055186 57055485 -160981673 - AluSx SINE Alu -11 301 1 1839 140 19 7 chr3 57055490 57055798 -160981360 - AluSx SINE Alu 0 312 1 830 121 0 0 chr3 57055798 57055914 -160981244 - AluJo/FLAM SINE Alu -195 117 2 450 191 61 0 chr3 57055917 57056032 -160981126 - L1M4 LINE L1 -2185 3961 3840 846 248 52 0 chr3 57056972 57057222 -160979936 - L1M4 LINE L1 -2292 3854 3592 2305 89 0 0 chr3 57057258 57057560 -160979598 - AluSx SINE Alu -1 311 10 2783 240 75 25 chr3 57057561 57058550 -160978608 - L1M4 LINE L1 -979 5167 4130 687 279 132 0 chr3 57058657 57058854 -160978304 - MIR SINE MIR -21 241 19 1659 124 0 30 chr3 57059681 57059947 -160977211 + AluSx SINE Alu 44 301 -11 1596 150 0 12 chr3 57060157 57060411 -160976747 - AluJo SINE Alu -23 289 39 2031 125 0 0 chr3 57060423 57060718 -160976440 - AluSx SINE Alu -17 295 1 1343 235 21 110 chr3 57060969 57061489 -160975669 - L2 LINE L2 -1 3312 2839 324 262 69 72 chr3 57062045 57062194 -160974964 - L1MC4 LINE L1 -85 7957 7809 2217 105 0 3 chr3 57062194 57062500 -160974658 - AluSq SINE Alu -8 305 1 324 262 69 72 chr3 57062500 57062726 -160974432 - L1MC4 LINE L1 -233 7809 7473 907 211 138 112 chr3 57062740 57063113 -160974045 + MER20B DNA MER1_type 229 591 -192 2122 108 3 0 chr3 57063113 57063418 -160973740 - AluSq SINE Alu -7 306 1 907 211 138 112 chr3 57063418 57063469 -160973689 + MER20B DNA MER1_type 591 639 -144 1793 125 3 60 chr3 57063469 57063788 -160973370 + AluSg SINE Alu 1 301 -9 907 211 138 112 chr3 57063788 57063898 -160973260 + MER20B DNA MER1_type 639 778 -5 273 270 180 18 chr3 57064080 57064191 -160972967 - L2 LINE L2 -422 2892 2764 2036 122 0 0 chr3 57064261 57064555 -160972603 + AluSg SINE Alu 1 294 -16 2117 109 13 0 chr3 57064555 57064858 -160972300 + AluSx SINE Alu 1 307 -5 1693 161 13 3 chr3 57065542 57065840 -160971318 + AluJb SINE Alu 2 302 -10 2263 65 10 0 chr3 57065896 57066187 -160970971 + AluY SINE Alu 1 294 -17 2179 124 0 0 chr3 57067110 57067417 -160969741 - AluSx SINE Alu -5 307 1 2088 113 0 7 chr3 57067418 57067727 -160969431 - AluSq SINE Alu 0 313 7 21 57 0 0 chr3 57067991 57068026 -160969132 + AT_rich Low_complexity Low_complexity 1 35 0 252 319 204 16 chr3 57068043 57068234 -160968924 - MIR SINE MIR -23 239 13 760 97 32 32 chr3 57068690 57068814 -160968344 + AluJb SINE Alu 2 125 -187 2302 78 0 0 chr3 57069546 57069840 -160967318 - AluSc SINE Alu -15 294 1 264 117 0 92 chr3 57069840 57069905 -160967253 + L1MD3 LINE L1 7936 8042 0 5900 142 179 93 chr3 57073054 57074617 -160962541 - pTR5 LTR ERV1 0 2438 743 1377 204 139 51 chr3 57074917 57075407 -160961751 + LTR10B LTR ERV1 1 533 -14 4146 197 39 86 chr3 57075462 57076636 -160960522 + HERVI LTR ERV1 26 1144 -6641 2303 69 0 7 chr3 57077088 57077393 -160959765 - AluY SINE Alu -8 303 1 1591 218 40 22 chr3 57077446 57078001 -160959157 + HERVI LTR ERV1 1219 4623 -3162 493 243 47 34 chr3 57078065 57078213 -160958945 + HERVI LTR ERV1 4778 4927 -2858 330 215 0 89 chr3 57078196 57078275 -160958883 + HERVI LTR ERV1 5346 5417 -2368 * 1858 208 136 18 chr3 57078289 57078737 -160958421 + Harlequin LTR ERV1 2659 3159 -3737 6530 220 18 13 chr3 57079102 57080455 -160956703 + Harlequin LTR ERV1 6141 6649 0 1262 212 160 61 chr3 57080455 57080950 -160956208 + LTR10B LTR ERV1 1 544 -3 1394 88 0 0 chr3 57132623 57132793 -160904365 - AluSp SINE Alu -10 303 134 2183 111 0 25 chr3 57132793 57133108 -160904050 - AluSx SINE Alu -2 310 4 856 171 7 14 chr3 57133179 57133325 -160903833 + AluJb SINE Alu 147 291 -21 2419 82 3 3 chr3 57133402 57133705 -160903453 - AluSp SINE Alu -7 306 4 1928 78 8 0 chr3 57133826 57134069 -160903089 + AluY SINE Alu 56 300 -11 1139 58 0 22 chr3 57134072 57134209 -160902949 + AluY SINE Alu 1 134 -177 1819 143 7 17 chr3 57134209 57134510 -160902648 + AluSx SINE Alu 1 298 -14 289 302 11 0 chr3 57134553 57134661 -160902497 + L1MEc LINE L1 1512 1666 -910 1412 217 18 12 chr3 57134675 57135012 -160902146 + L1M4 LINE L1 3850 4188 -1958 1856 148 23 10 chr3 57135012 57135316 -160901842 + AluSx SINE Alu 1 308 -4 1257 100 6 0 chr3 57135411 57135581 -160901577 + AluSp SINE Alu 4 174 -139 664 133 0 10 chr3 57135681 57135779 -160901379 - AluSg/x SINE Alu -129 181 85 1255 162 45 54 chr3 57135779 57136001 -160901157 - AluJo SINE Alu -91 221 2 407 130 65 22 chr3 57136015 57136107 -160901051 + MLT-int LTR MaLR 675 770 -965 2215 127 3 13 chr3 57136131 57136445 -160900713 - AluSp SINE Alu -2 311 1 483 309 0 0 chr3 57136484 57136610 -160900548 + MLT-int LTR MaLR 1294 1419 -316 3227 123 58 41 chr3 57136610 57137193 -160899965 + MER4E LTR ERV1 1 593 -186 2603 47 0 0 chr3 57137193 57137490 -160899668 - AluY SINE Alu -14 297 1 24 0 0 0 chr3 57137601 57137625 -160899533 + AT_rich Low_complexity Low_complexity 1 24 0 308 46 138 7 chr3 57137625 57137777 -160899381 + (TA)n Simple_repeat Simple_repeat 1 172 0 441 23 86 52 chr3 57137807 57137981 -160899177 + (TA)n Simple_repeat Simple_repeat 1 180 0 304 352 88 26 chr3 57137988 57138215 -160898943 - L1MEd LINE L1 -5291 828 588 447 97 78 0 chr3 57138606 57138760 -160898398 + (TA)n Simple_repeat Simple_repeat 1 166 0 2362 68 3 20 chr3 57138760 57139054 -160898104 - AluSp SINE Alu -24 289 1 1664 163 64 7 chr3 57139063 57139358 -160897800 - AluJb SINE Alu 0 312 1 2331 95 0 3 chr3 57139363 57139658 -160897500 - AluSq SINE Alu -19 294 1 2293 101 17 0 chr3 57139658 57139954 -160897204 - AluSx SINE Alu -11 301 1 466 255 66 10 chr3 57140054 57140250 -160896908 - L1MC5 LINE L1 -32 7929 7723 1032 148 0 7 chr3 57140252 57140401 -160896757 + AluJo SINE Alu 1 148 -164 708 37 7 44 chr3 57140405 57140540 -160896618 + SVA Other Other 665 794 -592 1861 169 3 23 chr3 57140813 57141120 -160896038 - AluJb SINE Alu -11 301 1 414 346 111 4 chr3 57141318 57141552 -160895606 + MIR SINE MIR 4 262 0 208 360 140 9 chr3 57141717 57141831 -160895327 - MIR SINE MIR -34 228 100 969 122 0 27 chr3 57141850 57141997 -160895161 - FLAM_C SINE Alu 0 143 1 1131 87 0 0 chr3 57142798 57142936 -160894222 - AluSg/x SINE Alu -11 301 164 622 170 10 0 chr3 57143037 57143137 -160894021 + AluSg/x SINE Alu 190 290 -19 1457 175 13 78 chr3 57143169 57143312 -160893846 + AluJo SINE Alu 3 117 -195 1691 153 6 67 chr3 57143312 57143625 -160893533 + AluJb SINE Alu 10 303 -9 1457 175 13 78 chr3 57143625 57143790 -160893368 + AluJo SINE Alu 117 291 -21 763 194 8 0 chr3 57143927 57144061 -160893097 + AluJb SINE Alu 1 135 -177 1121 216 176 16 chr3 57144431 57144861 -160892297 - MLT1F LTR MaLR -3 539 50 1313 44 0 0 chr3 57144880 57145039 -160892119 - L1PA4 LINE L1 0 6155 5997 1256 101 0 0 chr3 57145085 57145243 -160891915 - AluSx SINE Alu -13 297 140 208 214 0 0 chr3 57145818 57145860 -160891298 + G-rich Low_complexity Low_complexity 3 44 0 183 226 0 81 chr3 57146157 57146219 -160890939 - MIR3 SINE MIR -139 69 13 2059 71 7 97 chr3 57146373 57146706 -160890452 - AluSx SINE Alu 0 305 1 1041 105 0 0 chr3 57146712 57146845 -160890313 - AluSx SINE Alu -180 133 1 1170 156 49 129 chr3 57147315 57147641 -160889517 + AluJo SINE Alu 1 300 -2 2460 71 7 0 chr3 57147814 57148111 -160889047 - AluSg SINE Alu -11 299 1 327 307 13 0 chr3 57148212 57148287 -160888871 + MIR SINE MIR 3 78 -184 2198 130 0 3 chr3 57148319 57148626 -160888532 + AluSx SINE Alu 1 306 -6 1778 155 49 0 chr3 57148627 57148911 -160888247 + AluSx SINE Alu 2 299 -13 207 100 0 0 chr3 57149054 57149084 -160888074 + (TC)n Simple_repeat Simple_repeat 1 30 0 2227 115 16 0 chr3 57149114 57149418 -160887740 - AluSx SINE Alu -2 310 2 2197 117 10 0 chr3 57149807 57150105 -160887053 - AluSx SINE Alu -11 301 1 2011 146 7 0 chr3 57150234 57150522 -160886636 - AluSx SINE Alu -22 290 1 432 244 119 11 chr3 57150692 57150868 -160886290 - L1MDa LINE L1 -2257 4283 4089 889 136 0 0 chr3 57150868 57151000 -160886158 - AluSp/q SINE Alu 0 313 182 3128 245 76 29 chr3 57151001 57151482 -160885676 - L1MDa LINE L1 -2569 3971 3514 1343 208 12 59 chr3 57151482 57151804 -160885354 - AluJb SINE Alu -4 308 2 3128 245 76 29 chr3 57151804 57152671 -160884487 - L1MDa LINE L1 -3026 3514 2559 1830 149 43 48 chr3 57152676 57153052 -160884106 - L1MA7 LINE L1 -7 6284 5911 509 195 0 0 chr3 57153052 57153134 -160884024 + AluJ/FLAM SINE Alu 4 85 -227 5982 175 19 101 chr3 57153143 57153314 -160883844 - L1P LINE L1 -816 5330 5147 2201 136 10 0 chr3 57153314 57153616 -160883542 - AluSx SINE Alu -7 305 1 5982 175 19 101 chr3 57153616 57154347 -160882811 - L1P LINE L1 -999 5147 4358 2324 124 3 0 chr3 57154347 57154654 -160882504 - AluSx SINE Alu -4 308 1 5982 175 19 101 chr3 57154654 57154932 -160882226 - L1P LINE L1 -1788 4358 4059 1656 179 4 11 chr3 57154932 57155211 -160881947 + AluJo SINE Alu 5 281 -31 5982 175 19 101 chr3 57155211 57155247 -160881911 - L1P LINE L1 -2087 4059 4022 333 0 0 0 chr3 57155247 57155284 -160881874 + (CA)n Simple_repeat Simple_repeat 2 38 0 5982 175 19 101 chr3 57155284 57155889 -160881269 - L1P LINE L1 -2124 4022 3680 821 159 0 57 chr3 57155886 57156062 -160881096 - L1 LINE L1 -1223 4923 4758 * 2478 86 3 0 chr3 57156101 57156403 -160880755 + AluY SINE Alu 1 303 -8 529 157 0 58 chr3 57156410 57156531 -160880627 - L1 LINE L1 -1369 4777 4664 1020 195 99 4 chr3 57156613 57156885 -160880273 - L1MDa LINE L1 -4675 1865 1568 2211 124 0 7 chr3 57156914 57157213 -160879945 - AluSx SINE Alu -15 297 1 2025 113 11 4 chr3 57158163 57158438 -160878720 - AluSx SINE Alu -35 277 1 1174 136 0 0 chr3 57158889 57159051 -160878107 + FRAM SINE Alu 1 159 -17 201 337 81 0 chr3 57159885 57159971 -160877187 + L2 LINE L2 2972 3064 -208 28 61 0 0 chr3 57160748 57160797 -160876361 + GC_rich Low_complexity Low_complexity 1 49 0 314 102 41 194 chr3 57161425 57161523 -160875635 - L2 LINE L2 -48 3265 3183 223 217 22 0 chr3 57161575 57161621 -160875537 + L2 LINE L2 2303 2349 -965 622 343 40 83 chr3 57161749 57162023 -160875135 + L2 LINE L2 2466 2750 -522 2128 103 6 59 chr3 57162023 57162343 -160874815 - AluSx SINE Alu -9 303 1 622 343 40 83 chr3 57162343 57162873 -160874285 + L2 LINE L2 2750 3272 0 2494 91 0 0 chr3 57162994 57163301 -160873857 + AluSx SINE Alu 1 307 -5 822 148 0 0 chr3 57163394 57163511 -160873647 + AluJo SINE Alu 29 146 -162 1820 144 6 39 chr3 57163511 57163823 -160873335 + AluJb SINE Alu 3 304 -8 418 129 86 0 chr3 57164453 57164523 -160872635 - AluS SINE Alu -9 300 225 1009 136 0 0 chr3 57164623 57164763 -160872395 - FRAM SINE Alu -36 140 1 2491 65 0 40 chr3 57164912 57165236 -160871922 - AluY SINE Alu 0 311 1 1935 112 25 0 chr3 57165236 57165512 -160871646 - AluSq SINE Alu -30 283 1 2239 92 0 3 chr3 57165547 57165873 -160871285 - AluSg1 SINE Alu 0 325 1 2052 142 0 0 chr3 57165894 57166219 -160870939 - AluSq SINE Alu 0 325 1 1743 137 0 4 chr3 57166258 57166513 -160870645 - AluSg SINE Alu -16 294 41 325 236 75 0 chr3 57166532 57166638 -160870520 - L1M4 LINE L1 -3130 3016 2903 273 25 0 75 chr3 57166638 57166678 -160870480 - U1 snRNA snRNA -128 37 1 207 0 0 0 chr3 57166778 57166801 -160870357 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2531 61 0 0 chr3 57166829 57167126 -160870032 + AluY SINE Alu 1 297 -14 2355 92 0 0 chr3 57167141 57167436 -160869722 + AluSg SINE Alu 1 295 -15 543 269 7 0 chr3 57167461 57167606 -160869552 - L1M4 LINE L1 -3320 2826 2681 209 195 24 0 chr3 57168237 57168278 -160868880 + (TGG)n Simple_repeat Simple_repeat 1 42 0 777 201 0 0 chr3 57169464 57169603 -160867555 + FAM SINE Alu 1 139 -46 1786 93 0 4 chr3 57169636 57169861 -160867297 + AluSq SINE Alu 1 224 -89 2436 77 10 0 chr3 57170670 57170970 -160866188 - AluSq SINE Alu -10 303 1 281 261 117 124 chr3 57171922 57172325 -160864833 - L2 LINE L2 -20 3252 2853 29 0 0 25 chr3 57172367 57172395 -160864763 + AT_rich Low_complexity Low_complexity 1 29 -10 2341 95 0 13 chr3 57172395 57172710 -160864448 + AluSx SINE Alu 1 311 -1 29 0 0 25 chr3 57172710 57172721 -160864437 + AT_rich Low_complexity Low_complexity 29 39 0 1547 145 5 0 chr3 57172727 57172948 -160864210 + AluJo SINE Alu 82 303 -9 323 111 0 0 chr3 57173010 57173064 -160864094 - AluJb SINE Alu 0 302 249 1267 96 21 48 chr3 57173066 57173254 -160863904 - AluJb SINE Alu -129 183 1 2216 100 3 29 chr3 57174516 57174827 -160862331 - AluSx SINE Alu -9 303 1 1906 129 63 0 chr3 57174829 57175116 -160862042 - AluSx SINE Alu -7 305 1 1441 133 140 22 chr3 57175125 57175396 -160861762 - AluSg1 SINE Alu -2 307 5 2268 73 66 3 chr3 57175455 57175741 -160861417 - AluSg SINE Alu -6 304 1 772 140 112 7 chr3 57175753 57175896 -160861262 + AluJo SINE Alu 26 183 -129 2346 96 3 0 chr3 57176077 57176379 -160860779 - AluSq SINE Alu -6 307 5 367 328 43 21 chr3 57176692 57176878 -160860280 + L2 LINE L2 3073 3262 -10 180 0 0 0 chr3 57180722 57180742 -160856416 + (CAGG)n Simple_repeat Simple_repeat 4 23 0 2319 75 0 0 chr3 57184314 57184606 -160852552 - AluY SINE Alu -19 292 1 516 141 0 0 chr3 57184762 57184833 -160852325 - AluJ/FRAM SINE Alu -24 288 218 827 123 0 8 chr3 57184860 57184982 -160852176 - FLAM_C SINE Alu -22 121 1 2177 122 0 3 chr3 57185022 57185334 -160851824 + AluSq SINE Alu 1 311 -2 215 362 126 29 chr3 57185504 57185678 -160851480 + L3 LINE CR1 1385 1575 -2 196 300 57 43 chr3 57186827 57186967 -160850191 - L2 LINE L2 -40 3273 3132 770 316 48 4 chr3 57187914 57188164 -160848994 - MIR SINE MIR 0 262 2 1463 85 5 0 chr3 57188408 57188596 -160848562 + AluSc SINE Alu 1 189 -120 1748 167 0 55 chr3 57188791 57188919 -160848239 + AluJo SINE Alu 1 134 -178 2369 84 3 0 chr3 57188919 57189227 -160847931 - AluY SINE Alu -2 309 1 1748 167 0 55 chr3 57189227 57189428 -160847730 + AluJo SINE Alu 134 312 0 990 182 0 0 chr3 57189921 57190086 -160847072 + FRAM SINE Alu 8 172 -4 302 195 0 24 chr3 57190769 57190851 -160846307 - LTR33 LTR ERVL 0 521 442 1190 188 49 39 chr3 57190982 57191290 -160845868 + LTR55 LTR ERV 231 541 -7 2162 124 0 0 chr3 57191339 57191645 -160845513 + AluSq SINE Alu 1 306 -7 2405 51 20 0 chr3 57191876 57192170 -160844988 - AluSp SINE Alu -13 300 1 1021 161 0 0 chr3 57192227 57192382 -160844776 - AluJb SINE Alu -14 298 144 1917 155 0 7 chr3 57192396 57192693 -160844465 - AluJb SINE Alu -17 295 1 326 244 101 12 chr3 57192761 57192929 -160844229 + L1M4 LINE L1 2345 2527 -3619 292 235 157 0 chr3 57193144 57193246 -160843912 + MIR3 SINE MIR 15 132 -76 230 311 142 0 chr3 57193729 57193835 -160843323 - MIR SINE MIR -61 147 27 256 91 0 36 chr3 57193894 57193949 -160843209 + (CA)n Simple_repeat Simple_repeat 2 54 0 476 238 118 25 chr3 57194440 57194821 -160842337 + LTR33 LTR ERVL 23 521 0 241 167 0 21 chr3 57194940 57194988 -160842170 - MIR SINE MIR -129 79 33 257 242 42 21 chr3 57195344 57195411 -160841747 + LTR33A LTR ERVL 425 496 -27 2054 146 0 0 chr3 57195411 57195732 -160841426 - AluSx SINE Alu 0 312 1 257 242 42 21 chr3 57195732 57195759 -160841399 + LTR33A LTR ERVL 496 521 -2 1076 191 23 23 chr3 57195866 57196081 -160841077 - AluJo SINE Alu -11 301 87 2317 73 7 3 chr3 57196463 57196763 -160840395 - AluSq SINE Alu -12 301 1 332 333 83 14 chr3 57201335 57201479 -160835679 + MIR SINE MIR 107 260 -2 466 246 18 9 chr3 57202243 57202353 -160834805 - MER81 DNA DNA -2 112 2 201 322 83 8 chr3 57202512 57202633 -160834525 - MIR SINE MIR -116 146 17 182 239 254 0 chr3 57202658 57202729 -160834429 + MIR SINE MIR 46 134 -74 1950 130 0 23 chr3 57203102 57203402 -160833756 - AluJb SINE Alu -14 298 6 208 317 42 33 chr3 57203870 57203990 -160833168 + L2 LINE L2 2442 2562 -752 204 391 17 0 chr3 57204016 57204131 -160833027 + L2 LINE L2 2656 2772 -542 354 307 6 22 chr3 57208355 57208477 -160828681 + (CAGCC)n Simple_repeat Simple_repeat 5 125 -55 1012 234 42 0 chr3 57208477 57208691 -160828467 + MER58A DNA MER1_type 2 224 0 354 307 6 22 chr3 57208691 57208747 -160828411 + (CAGCC)n Simple_repeat Simple_repeat 125 180 0 215 345 134 0 chr3 57212148 57212267 -160824891 + MER5A DNA MER1_type 55 189 0 214 366 99 0 chr3 57216518 57216619 -160820539 - MIR SINE MIR -71 137 27 297 0 0 0 chr3 57220764 57220797 -160816361 + (CA)n Simple_repeat Simple_repeat 2 34 0 269 289 11 22 chr3 57220823 57221003 -160816155 + (CA)n Simple_repeat Simple_repeat 2 179 0 299 310 86 0 chr3 57222970 57223086 -160814072 + L2 LINE L2 3142 3267 -5 22 0 0 0 chr3 57224461 57224483 -160812675 + GC_rich Low_complexity Low_complexity 1 22 0 189 255 43 0 chr3 57228211 57228258 -160808900 + L2 LINE L2 3264 3312 -1 180 239 22 0 chr3 57228984 57229030 -160808128 + MER5A DNA MER1_type 1 47 -142 271 280 51 70 chr3 57231721 57231935 -160805223 + L2 LINE L2 2554 2763 -551 187 310 53 29 chr3 57231968 57232139 -160805019 + L2 LINE L2 2886 3060 -253 722 281 62 16 chr3 57232577 57232883 -160804275 + L2 LINE L2 1288 1607 -1707 351 289 31 0 chr3 57232894 57233022 -160804136 + L2 LINE L2 1729 1860 -1454 1630 261 109 33 chr3 57233024 57233184 -160803974 + L2 LINE L2 2048 2194 -1119 548 148 56 0 chr3 57233184 57233292 -160803866 + L1MB7 LINE L1 6071 6184 0 1630 261 109 33 chr3 57233292 57234202 -160802956 + L2 LINE L2 2194 3204 -109 2089 88 0 0 chr3 57234312 57234573 -160802585 + AluSg SINE Alu 1 261 -49 246 160 67 13 chr3 57234966 57235041 -160802117 + (TA)n Simple_repeat Simple_repeat 1 79 0 4194 102 73 35 chr3 57235790 57236439 -160800719 - Tigger3(Golem) DNA MER2_type -1 3028 2347 2344 98 3 3 chr3 57236439 57236746 -160800412 + AluSq SINE Alu 1 307 -6 4194 102 73 35 chr3 57236746 57236819 -160800339 - Tigger3(Golem) DNA MER2_type -682 2347 2278 570 191 38 0 chr3 57236807 57236912 -160800246 - Tigger3(Golem) DNA MER2_type -2918 111 3 * 1022 355 87 22 chr3 57238004 57238719 -160798439 - ERVL LTR ERVL -2156 2840 2045 2201 105 3 13 chr3 57238719 57239024 -160798134 + AluSx SINE Alu 1 302 -10 1022 355 87 22 chr3 57239024 57239489 -160797669 - ERVL LTR ERVL -2951 2045 1612 482 301 180 17 chr3 57239515 57239804 -160797354 - LTR16C LTR ERVL -59 432 97 2588 71 0 0 chr3 57240333 57240642 -160796516 - AluSx SINE Alu -3 309 1 1534 207 65 91 chr3 57241569 57242119 -160795039 - MLT1H LTR MaLR -2 547 12 3438 140 28 81 chr3 57242688 57242774 -160794384 - MER67C LTR ERV1 0 710 621 1845 157 0 17 chr3 57242774 57243068 -160794090 - AluSx SINE Alu -10 302 14 3438 140 28 81 chr3 57243068 57243587 -160793571 - MER67C LTR ERV1 -89 621 150 2065 148 7 0 chr3 57243587 57243885 -160793273 - AluJb SINE Alu -12 300 1 3438 140 28 81 chr3 57243885 57244028 -160793130 - MER67C LTR ERV1 -560 150 1 32 26 0 0 chr3 57244257 57244296 -160792862 + AT_rich Low_complexity Low_complexity 1 39 0 423 310 35 35 chr3 57244466 57244727 -160792431 - L2 LINE L2 -838 2476 2216 2150 111 31 0 chr3 57245403 57245692 -160791466 + AluSx SINE Alu 1 298 -14 393 264 38 0 chr3 57245799 57245905 -160791253 + L1M4 LINE L1 4793 4902 -1244 255 161 36 18 chr3 57245937 57245993 -160791165 + L1M4 LINE L1 4890 4946 -1200 2495 76 0 0 chr3 57246629 57246930 -160790228 - AluSg SINE Alu -9 301 1 313 200 17 0 chr3 57248550 57248610 -160788548 - L2 LINE L2 -7 3265 3205 189 289 26 0 chr3 57248773 57248849 -160788309 + L2 LINE L2 3234 3311 -2 1343 211 55 0 chr3 57249063 57249352 -160787806 + L1MDa LINE L1 34 338 -6202 4134 182 112 68 chr3 57249352 57250590 -160786568 - MER52C LTR ERV1 0 1278 2 1750 271 77 6 chr3 57250591 57251059 -160786099 + L1MDa LINE L1 335 835 -5705 * 5899 141 29 16 chr3 57251058 57252412 -160784746 + L1MA8 LINE L1 4914 6286 -5 1744 184 78 61 chr3 57252425 57252914 -160784244 + L1MDa LINE L1 893 1389 -5151 1546 127 4 25 chr3 57252916 57253161 -160783997 + THE1B LTR MaLR 73 312 -52 5177 204 75 39 chr3 57253171 57254875 -160782283 + L1MDa LINE L1 1389 3031 -3509 1865 152 3 39 chr3 57254875 57255184 -160781974 + AluJb SINE Alu 1 298 -14 5177 204 75 39 chr3 57255184 57255384 -160781774 + L1MDa LINE L1 3031 3222 -3318 2103 151 0 0 chr3 57255384 57255689 -160781469 + AluSx SINE Alu 1 305 -7 5177 204 75 39 chr3 57255689 57256346 -160780812 + L1MDa LINE L1 3222 3854 -2686 2820 125 12 9 chr3 57256346 57256771 -160780387 + MSTA LTR MaLR 1 426 -2 5177 204 75 39 chr3 57256771 57257703 -160779455 + L1MDa LINE L1 3854 5043 -1497 479 106 0 0 chr3 57257707 57257773 -160779385 + AluS SINE Alu 2 67 -246 366 298 43 0 chr3 57257773 57257914 -160779244 + L1MDa LINE L1 5200 5346 -1194 388 232 21 0 chr3 57257939 57258034 -160779124 + L1MB4 LINE L1 5385 5481 -690 748 180 49 16 chr3 57258035 57258218 -160778940 + L1MB4 LINE L1 5967 6155 -25 861 180 69 132 chr3 57258407 57258748 -160778410 + L1MD2 LINE L1 5860 6173 -69 2251 105 0 7 chr3 57258748 57259043 -160778115 - AluSg1 SINE Alu -14 295 3 861 180 69 132 chr3 57259043 57259102 -160778056 + L1MD2 LINE L1 6173 6234 -8 358 264 40 0 chr3 57259476 57259601 -160777557 + MIR SINE MIR 2 131 -131 695 135 191 0 chr3 57261347 57261473 -160775685 - AluSc SINE Alu -5 304 155 604 281 20 49 chr3 57261584 57261713 -160775445 + MIR SINE MIR 2 122 -140 2370 195 76 22 chr3 57261713 57262303 -160774855 - MER74B LTR ERVL 0 622 1 604 281 20 49 chr3 57262303 57262419 -160774739 + MIR SINE MIR 122 240 -22 2312 96 0 3 chr3 57262786 57263087 -160774071 - AluSg SINE Alu -10 300 1 1409 217 57 15 chr3 57263701 57264033 -160773125 - MLT1A1 LTR MaLR -19 346 1 234 227 0 0 chr3 57265315 57265359 -160771799 + G-rich Low_complexity Low_complexity 3 46 0 448 287 79 18 chr3 57265807 57265971 -160771187 + L2 LINE L2 2607 2780 -534 834 133 7 60 chr3 57266010 57266160 -160770998 + AluJo SINE Alu 1 142 -170 1226 149 74 28 chr3 57266211 57266303 -160770855 - AluJo SINE Alu -87 225 139 2094 151 0 0 chr3 57266303 57266601 -160770557 - AluSx SINE Alu -14 298 1 1226 149 74 28 chr3 57266601 57266723 -160770435 - AluJo SINE Alu -173 139 1 2040 138 24 0 chr3 57266738 57267034 -160770124 - AluSx SINE Alu -7 305 3 213 295 38 0 chr3 57267040 57267145 -160770013 - MIR SINE MIR -67 195 87 2393 80 0 3 chr3 57267646 57267948 -160769210 - AluY SINE Alu -10 301 1 2439 88 7 0 chr3 57267948 57268255 -160768903 - AluSx SINE Alu -3 309 1 373 296 23 45 chr3 57268491 57268623 -160768535 + MLT1F-int LTR MaLR 756 884 -487 446 302 83 83 chr3 57268734 57269121 -160768037 + MLT1F-int LTR MaLR 961 1347 -24 1385 201 29 21 chr3 57269151 57269619 -160767539 + MLT1F LTR MaLR 8 590 -5 218 250 66 0 chr3 57269983 57270059 -160767099 - MIR SINE MIR -142 120 40 2070 112 53 3 chr3 57270587 57270872 -160766286 - AluSg SINE Alu -11 299 1 2126 159 0 0 chr3 57271807 57272122 -160765036 + 7SLRNA srpRNA srpRNA 1 315 -5 2546 67 0 0 chr3 57272996 57273295 -160763863 - AluY SINE Alu -12 299 1 2259 90 3 0 chr3 57274098 57274387 -160762771 - AluSc SINE Alu -19 290 1 611 230 104 48 chr3 57274826 57275096 -160762062 + L1MC4a LINE L1 5576 5860 -1948 4874 211 77 22 chr3 57275261 57276788 -160760370 - L1MC/D LINE L1 -768 5378 3846 5790 146 40 18 chr3 57276827 57277312 -160759846 - L1MA7 LINE L1 -5 6286 5813 312 27 0 0 chr3 57277312 57277349 -160759809 + (TG)n Simple_repeat Simple_repeat 2 38 0 5790 146 40 18 chr3 57277349 57278543 -160758615 - L1MA7 LINE L1 -478 5813 4573 26 30 0 0 chr3 57478654 57478687 -160558471 + AT_rich Low_complexity Low_complexity 1 33 0 1070 271 209 12 chr3 57478833 57479504 -160557654 - L1MB4 LINE L1 -4 6176 5374 305 102 51 0 chr3 57479507 57479566 -160557592 + AluSp/q SINE Alu 242 303 0 834 221 53 0 chr3 57480166 57480356 -160556802 - MLT2B1 LTR ERVL -320 200 1 629 329 126 17 chr3 57480595 57481236 -160555922 - L2 LINE L2 0 3313 2597 749 223 0 7 chr3 57481439 57481716 -160555442 + CT-rich Low_complexity Low_complexity 1 274 0 256 290 140 14 chr3 57481744 57482030 -160555128 + LSAU Satellite Satellite 132 453 -45 368 181 36 123 chr3 57483266 57483404 -160553754 + LSAU Satellite Satellite 2 127 -371 25 0 0 0 chr3 57483798 57483823 -160553335 + AT_rich Low_complexity Low_complexity 1 25 0 369 0 0 0 chr3 57484054 57484095 -160553063 + (A)n Simple_repeat Simple_repeat 1 41 0 227 130 0 0 chr3 57484815 57484861 -160552297 + L1M1 LINE L1 3209 3254 -4311 713 99 25 25 chr3 57485238 57485359 -160551799 + 5S rRNA rRNA 1 121 0 217 242 5 16 chr3 57486174 57486374 -160550784 + CT-rich Low_complexity Low_complexity 1 197 0 1957 196 68 25 chr3 57486378 57486818 -160550340 - LTR2B LTR ERV1 0 490 32 215 161 18 0 chr3 57486842 57486898 -160550260 + (TG)n Simple_repeat Simple_repeat 2 58 0 230 234 0 27 chr3 57487982 57488172 -160548986 + CT-rich Low_complexity Low_complexity 1 184 0 237 286 0 0 chr3 57488180 57488264 -160548894 + (TG)n Simple_repeat Simple_repeat 1 84 0 240 298 0 0 chr3 57489074 57489246 -160547912 + CT-rich Low_complexity Low_complexity 1 172 0 448 303 13 7 chr3 57489289 57489591 -160547567 + LSAU Satellite Satellite 1 304 0 24 32 0 0 chr3 57489771 57489802 -160547356 + AT_rich Low_complexity Low_complexity 1 31 0 368 251 187 57 chr3 57489802 57490085 -160547073 + L1M2 LINE L1 1750 2069 -4780 230 240 0 0 chr3 57491897 57491947 -160545211 + GA-rich Low_complexity Low_complexity 1 50 0 438 223 0 0 chr3 57493016 57493137 -160544021 + CT-rich Low_complexity Low_complexity 1 121 0 254 275 0 0 chr3 57493149 57493218 -160543940 + CT-rich Low_complexity Low_complexity 4 72 0 285 291 36 31 chr3 57493269 57493566 -160543592 + LSAU Satellite Satellite 141 498 0 598 165 19 0 chr3 57494504 57494607 -160542551 + Tigger1 DNA MER2_type 406 510 -1908 * 7443 136 27 88 chr3 57494602 57494940 -160542218 + Tigger1 DNA MER2_type 1006 1363 -1055 1693 158 16 7 chr3 57494940 57495250 -160541908 + AluSq SINE Alu 1 313 0 7443 136 27 88 chr3 57495250 57496137 -160541021 + Tigger1 DNA MER2_type 1363 2125 -293 2957 214 18 73 chr3 57496137 57497163 -160539995 + LTR5 LTR ERVK 1 969 0 7443 136 27 88 chr3 57497163 57497441 -160539717 + Tigger1 DNA MER2_type 2125 2418 0 952 179 6 0 chr3 57497445 57497613 -160539545 - AluJo/FRAM SINE Alu -9 303 135 2305 57 3 0 chr3 57497613 57497909 -160539249 - AluY SINE Alu -14 297 1 8386 157 26 81 chr3 57498149 57499995 -160537163 - L1M1 LINE L1 -4343 3222 1477 * 10564 198 27 8 chr3 57499968 57502260 -160534898 - L1P LINE L1 -796 6769 4435 210 118 0 0 chr3 57503171 57503205 -160533953 + (CA)n Simple_repeat Simple_repeat 2 35 0 317 250 0 0 chr3 57503211 57503291 -160533867 + MER103 DNA DNA 12 91 -75 289 220 0 22 chr3 57503351 57503442 -160533716 + L2 LINE L2 1996 2084 -1230 189 293 172 0 chr3 57503656 57503714 -160533444 + L2 LINE L2 3155 3222 -50 2473 206 21 0 chr3 57504584 57505098 -160532060 - L1PB4 LINE L1 -12 6144 5620 299 241 60 0 chr3 57505376 57505459 -160531699 + L2 LINE L2 3185 3272 0 2177 184 106 38 chr3 57505674 57506202 -160530956 + LTR6A LTR ERV1 1 564 0 263 250 167 0 chr3 57506911 57506983 -160530175 + L2 LINE L2 3230 3313 0 22 56 0 0 chr3 57507740 57507776 -160529382 + AT_rich Low_complexity Low_complexity 1 36 0 255 200 0 0 chr3 57507963 57508008 -160529150 - MLT1H1 LTR MaLR 0 590 546 573 269 147 28 chr3 57508110 57508515 -160528643 - MLT1H1 LTR MaLR -120 447 1 477 50 0 0 chr3 57509211 57509271 -160527887 + (TA)n Simple_repeat Simple_repeat 1 60 0 252 59 0 0 chr3 57509508 57509542 -160527616 + (TGG)n Simple_repeat Simple_repeat 1 34 0 327 130 0 0 chr3 57509562 57509616 -160527542 + (CTG)n Simple_repeat Simple_repeat 1 54 0 659 257 121 38 chr3 57509633 57509948 -160527210 - L1PB4 LINE L1 -9 6147 5807 406 60 15 30 chr3 57509970 57510037 -160527121 + (TTTTC)n Simple_repeat Simple_repeat 5 70 0 255 213 9 130 chr3 57510052 57510160 -160526998 - FLAM SINE Alu -25 108 51 2741 56 20 3 chr3 57510619 57510977 -160526181 - L1PA4 LINE L1 -3 6152 5789 317 223 48 39 chr3 57511135 57511238 -160525920 + MER89 LTR ERV1 323 426 -133 324 0 0 0 chr3 57511396 57511432 -160525726 + (CA)n Simple_repeat Simple_repeat 1 36 0 1386 191 25 0 chr3 57511564 57511841 -160525317 + AluSx SINE Alu 1 284 -28 465 205 71 31 chr3 57511859 57511986 -160525172 + AluJb SINE Alu 130 261 -51 791 140 14 14 chr3 57512020 57512234 -160524924 + CT-rich Low_complexity Low_complexity 1 214 0 386 123 0 0 chr3 57512234 57512291 -160524867 - AluJ/FLAM SINE Alu -242 60 4 825 203 138 61 chr3 57512371 57512526 -160524632 - AluJo SINE Alu -26 286 102 2085 103 3 13 chr3 57512526 57512838 -160524320 - AluSp SINE Alu -4 309 1 825 203 138 61 chr3 57512838 57512943 -160524215 - AluJo SINE Alu -210 102 6 735 52 0 0 chr3 57512982 57513078 -160524080 + (TTTC)n Simple_repeat Simple_repeat 3 98 0 198 0 0 0 chr3 57513137 57513159 -160523999 + (CGAGG)n Simple_repeat Simple_repeat 1 22 0 792 241 7 90 chr3 57513609 57513899 -160523259 + L1PA13 LINE L1 5888 6153 -10 339 130 0 0 chr3 57513902 57513956 -160523202 + (GA)n Simple_repeat Simple_repeat 1 54 0 1537 150 44 14 chr3 57514046 57514340 -160522818 - AluSx SINE Alu 0 312 10 343 91 0 0 chr3 57514445 57514489 -160522669 + AluSp/q SINE Alu 240 283 -20 489 34 0 0 chr3 57514504 57514563 -160522595 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 1614 143 3 62 chr3 57514632 57515111 -160522047 + AluSg SINE Alu 8 467 0 510 192 0 0 chr3 57515139 57515290 -160521868 + CT-rich Low_complexity Low_complexity 2 152 0 705 171 0 0 chr3 57515326 57515496 -160521662 + CT-rich Low_complexity Low_complexity 1 170 0 369 189 0 0 chr3 57515521 57515616 -160521542 + CT-rich Low_complexity Low_complexity 2 96 0 2342 84 0 0 chr3 57515629 57515937 -160521221 - AluY SINE Alu -1 310 3 674 175 6 0 chr3 57515941 57516118 -160521040 + CT-rich Low_complexity Low_complexity 1 178 0 355 163 12 44 chr3 57516137 57516297 -160520861 + (TCTCTG)n Simple_repeat Simple_repeat 3 157 0 * 678 189 0 0 chr3 57516269 57516554 -160520604 + CT-rich Low_complexity Low_complexity 1 285 0 407 239 15 31 chr3 57516554 57516684 -160520474 + MER39B LTR ERV1 284 411 -242 1800 111 0 21 chr3 57516817 57517147 -160520011 + AluSx SINE Alu 1 324 0 258 160 0 0 chr3 57518267 57518317 -160518841 + (CTG)n Simple_repeat Simple_repeat 1 50 0 630 173 7 0 chr3 57518405 57518710 -160518448 + CT-rich Low_complexity Low_complexity 1 307 0 296 157 22 56 chr3 57518711 57518800 -160518358 + (TCTCTG)n Simple_repeat Simple_repeat 2 87 0 530 157 22 17 chr3 57518801 57518979 -160518179 + (TCTG)n Simple_repeat Simple_repeat 2 180 0 * 617 185 6 0 chr3 57518972 57519150 -160518008 + CT-rich Low_complexity Low_complexity 2 180 0 203 178 17 34 chr3 57519134 57519252 -160517906 + (TCTCTG)n Simple_repeat Simple_repeat 4 119 0 * 597 194 0 0 chr3 57519243 57519423 -160517735 + CT-rich Low_complexity Low_complexity 1 180 0 279 281 0 35 chr3 57519832 57519946 -160517212 - L1MC/D LINE L1 -585 5774 5665 920 109 166 23 chr3 57520762 57520937 -160516221 - AluSg/x SINE Alu -17 293 94 24 0 0 0 chr3 57521004 57521028 -160516130 + AT_rich Low_complexity Low_complexity 1 24 0 1948 125 0 3 chr3 57521722 57522060 -160515098 - AluSc SINE Alu 0 337 1 186 43 0 0 chr3 57522456 57522479 -160514679 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 283 269 37 37 chr3 57524881 57524989 -160512169 - LTR54B LTR ERV1 -352 146 39 606 154 0 130 chr3 57525330 57525499 -160511659 + AluJb SINE Alu 137 283 -29 1966 110 3 17 chr3 57525578 57525879 -160511279 - AluSp SINE Alu -16 297 1 24 71 0 14 chr3 57525886 57525937 -160511221 + AT_rich Low_complexity Low_complexity 1 52 -17 2156 68 0 14 chr3 57525937 57526229 -160510929 - AluY SINE Alu -23 288 1 24 71 0 14 chr3 57526229 57526247 -160510911 + AT_rich Low_complexity Low_complexity 52 69 0 636 147 108 16 chr3 57526268 57526397 -160510761 - AluJb SINE Alu -171 141 1 218 81 27 0 chr3 57527387 57527424 -160509734 + (TA)n Simple_repeat Simple_repeat 2 39 0 2130 70 3 3 chr3 57527424 57527708 -160509450 - AluY SINE Alu -27 284 1 372 119 0 0 chr3 57527708 57527767 -160509391 - L1P LINE L1 -806 5362 5304 4143 160 25 15 chr3 57527771 57528519 -160508639 + L1PA16 LINE L1 5390 6145 -21 10748 196 59 10 chr3 57528520 57531447 -160505711 + L1M1 LINE L1 7 3159 -4406 * 36854 63 3 0 chr3 57531438 57536072 -160501086 - L1P LINE L1 -1491 4655 7 5340 245 63 17 chr3 57536080 57537975 -160499183 + L1M1 LINE L1 3282 5305 -2260 1885 153 0 0 chr3 57537975 57538296 -160498862 + AluSx SINE Alu 1 321 0 5340 245 63 17 chr3 57538296 57538680 -160498478 + L1M1 LINE L1 5305 5670 -1895 1807 190 24 6 chr3 57538682 57539019 -160498139 + MSTA LTR MaLR 1 343 -85 6894 221 34 8 chr3 57539030 57540531 -160496627 + MSTA-int LTR MaLR 112 1651 0 1911 221 61 10 chr3 57540531 57540938 -160496220 + MSTA LTR MaLR 1 428 0 2351 220 64 9 chr3 57540938 57541291 -160495867 + L1M1 LINE L1 5668 6000 -1565 1929 161 3 6 chr3 57541291 57541602 -160495556 + AluSg SINE Alu 1 310 0 2351 220 64 9 chr3 57541602 57541890 -160495268 + L1M1 LINE L1 6000 6344 -1221 727 93 13 0 chr3 57541890 57542148 -160495010 - CER Satellite Satellite 0 261 1 5821 180 23 8 chr3 57542152 57542569 -160494589 + L1MA2 LINE L1 4850 5259 -1045 2062 146 39 62 chr3 57542569 57542897 -160494261 + THE1C LTR MaLR 1 320 -55 2025 139 3 0 chr3 57542897 57543184 -160493974 + AluSg1 SINE Alu 2 289 -20 2062 146 39 62 chr3 57543184 57543239 -160493919 + THE1C LTR MaLR 320 375 0 5821 180 23 8 chr3 57543239 57544259 -160492899 + L1MA2 LINE L1 5259 6304 0 21 0 0 0 chr3 57544263 57544284 -160492874 + AT_rich Low_complexity Low_complexity 1 21 0 767 169 103 0 chr3 57544286 57544422 -160492736 - MER4B LTR ERV1 -460 150 1 1956 152 3 0 chr3 57544746 57545098 -160492060 + AluSx SINE Alu 2 312 0 938 111 40 0 chr3 57545444 57545570 -160491588 - FLAM_C SINE Alu -2 131 1 613 252 7 7 chr3 57545573 57545716 -160491442 - L1MC4 LINE L1 -454 7588 7446 814 194 0 0 chr3 57545807 57545941 -160491217 - AluJb SINE Alu -50 262 129 6932 59 7 16 chr3 57545958 57547527 -160489631 - SVA Other Other -723 1374 53 760 36 27 9 chr3 57547527 57547638 -160489520 + (GGGAGA)n Simple_repeat Simple_repeat 3 115 0 833 273 5 10 chr3 57547959 57548153 -160489005 + MER41D LTR ERV1 365 557 0 8903 308 34 22 chr3 57549355 57549512 -160487646 + PRIMA41-int LTR ERV1 1582 1736 -6020 5573 139 36 13 chr3 57549512 57550459 -160486699 - LTR5 LTR ERVK 0 969 1 8903 308 34 22 chr3 57550459 57553206 -160483952 + PRIMA41-int LTR ERV1 1736 4581 -3175 2454 145 3 27 chr3 57553206 57553415 -160483743 - THE1B LTR MaLR 0 364 166 1754 145 4 0 chr3 57553415 57553691 -160483467 + AluSx SINE Alu 23 299 -13 2454 145 3 27 chr3 57553691 57553854 -160483304 - THE1B LTR MaLR -198 166 1 8903 308 34 22 chr3 57553854 57555456 -160481702 + PRIMA41-int LTR ERV1 4581 6163 -1593 460 0 33 0 chr3 57555768 57555828 -160481330 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 5385 253 60 26 chr3 57555828 57557809 -160479349 - L1 LINE L1 -1209 4937 2889 10249 133 19 3 chr3 57559105 57559386 -160477772 - L1PA7 LINE L1 -5 6464 6189 2045 110 62 3 chr3 57559386 57559676 -160477482 - AluSp SINE Alu -6 307 1 10249 133 19 3 chr3 57559676 57561770 -160475388 - L1PA7 LINE L1 -280 6189 4099 4595 240 56 48 chr3 57561772 57563604 -160473554 - L1PA7 LINE L1 -4626 1825 10 756 323 31 46 chr3 57563828 57564283 -160472875 + L1MC4a LINE L1 5481 5928 -1880 389 242 20 65 chr3 57564526 57564679 -160472479 - L1M4 LINE L1 -2579 3567 3422 645 205 6 15 chr3 57564724 57565051 -160472107 + GA-rich Low_complexity Low_complexity 1 324 0 2237 154 15 56 chr3 57565325 57565733 -160471425 + MSTD LTR MaLR 4 394 -2 1030 94 8 0 chr3 57566012 57566189 -160470969 + BSR/Beta Satellite Satellite 1 178 -56 461 275 69 12 chr3 57566220 57566380 -160470778 + MIR SINE MIR 27 195 -67 367 216 67 165 chr3 57566380 57566492 -160470666 - MLT1I LTR MaLR 0 409 288 2144 108 0 0 chr3 57566492 57566771 -160470387 - AluY SINE Alu -32 279 1 367 216 67 165 chr3 57566771 57566986 -160470172 - MLT1I LTR MaLR -121 288 114 1990 156 0 0 chr3 57566998 57567293 -160469865 + AluSx SINE Alu 2 296 -16 287 248 89 38 chr3 57567450 57567607 -160469551 + LTR41 LTR ERVL 2 166 -607 252 336 35 17 chr3 57568705 57568821 -160468337 - MIR3 SINE MIR -78 130 13 480 244 52 89 chr3 57569312 57569623 -160467535 + MLT1H LTR MaLR 83 423 -27 324 279 48 58 chr3 57569644 57569894 -160467264 + L1M4 LINE L1 4957 5205 -941 2312 138 11 8 chr3 57569894 57570248 -160466910 + THE1A LTR MaLR 1 355 0 324 279 48 58 chr3 57570248 57570309 -160466849 + L1M4 LINE L1 5205 5265 -881 2024 120 3 0 chr3 57570336 57570620 -160466538 + AluSp SINE Alu 11 295 -18 189 216 27 0 chr3 57570922 57570959 -160466199 + MER5A DNA MER1_type 15 52 -137 270 226 9 66 chr3 57571420 57571526 -160465632 + L1ME4a LINE L1 5975 6074 -47 1692 235 19 14 chr3 57572555 57572917 -160464241 + MLT1A1 LTR MaLR 1 364 -1 205 259 123 37 chr3 57572988 57573069 -160464089 - L2 LINE L2 -10 3262 3175 397 232 28 55 chr3 57573770 57573951 -160463207 - L1MEc LINE L1 -4174 2222 2047 2481 114 40 11 chr3 57573954 57574332 -160462826 + MSTA LTR MaLR 3 391 -37 2044 107 0 30 chr3 57574334 57574632 -160462526 - AluSc SINE Alu -16 293 5 6527 37 0 57 chr3 57574675 57575531 -160461627 - L1PA4 LINE L1 -1 6154 5348 275 178 0 0 chr3 57575531 57575576 -160461582 + MSTA LTR MaLR 384 428 0 4027 272 60 60 chr3 57575578 57576148 -160461010 - L1MEc LINE L1 -4346 2050 1481 1942 162 0 0 chr3 57576148 57576450 -160460708 - AluJb SINE Alu -10 302 1 4027 272 60 60 chr3 57576450 57576484 -160460674 - L1MEc LINE L1 -4915 1481 1448 2365 102 0 3 chr3 57576484 57576797 -160460361 - AluSx SINE Alu 0 312 1 4027 272 60 60 chr3 57576797 57578013 -160459145 - L1MEc LINE L1 -4947 1449 229 375 298 0 10 chr3 57580105 57580209 -160456949 + L1 LINE L1 3 105 -5850 454 279 0 0 chr3 57580211 57580315 -160456843 + FLAM_C SINE Alu 3 106 -37 364 261 121 0 chr3 57580398 57580563 -160456595 + L1 LINE L1 4436 4620 -1414 474 332 92 12 chr3 57580597 57580934 -160456224 + L1MA9 LINE L1 459 822 -5133 2179 99 0 0 chr3 57580936 57581220 -160455938 + AluSg1 SINE Alu 1 284 -25 291 163 0 0 chr3 57581250 57581299 -160455859 + L1MA9 LINE L1 817 865 -5090 2466 233 77 35 chr3 57581359 57582531 -160454627 + L1MA9 LINE L1 4015 5235 -799 39561 62 3 4 chr3 57582532 57588683 -160448475 - L1PA4 LINE L1 -1 6154 4 2880 234 55 19 chr3 57588689 57589607 -160447551 + L1MA9 LINE L1 5225 6175 -25 214 242 10 10 chr3 57589651 57589750 -160447408 + (TA)n Simple_repeat Simple_repeat 2 100 0 180 303 45 34 chr3 57590796 57590885 -160446273 + MER5A DNA MER1_type 30 119 -70 649 193 0 0 chr3 57590887 57590996 -160446162 + FLAM_C SINE Alu 1 109 -34 183 208 21 31 chr3 57591902 57591998 -160445160 + CT-rich Low_complexity Low_complexity 1 95 0 386 221 7 0 chr3 57592042 57592178 -160444980 + (TG)n Simple_repeat Simple_repeat 2 138 0 22 35 0 0 chr3 57593715 57593744 -160443414 + AT_rich Low_complexity Low_complexity 1 29 0 1041 238 74 40 chr3 57594294 57594714 -160442444 + L1MD2 LINE L1 5908 6341 -18 309 303 84 8 chr3 57595213 57595332 -160441826 + MIR3 SINE MIR 66 193 -15 893 169 3 0 chr3 57595444 57595875 -160441283 + ALR/Alpha Satellite centromeric 1 432 -19 1585 62 5 0 chr3 57595875 57596099 -160441059 - L1P LINE L1 -894 5252 5028 1107 158 5 1 chr3 57596106 57614011 -160423147 - ALR/Alpha Satellite centromeric 0 17980 1 8251 59 2 0 chr3 57614011 57615112 -160422046 - L1P LINE L1 -1116 5030 3928 192 40 0 0 chr3 57615123 57615148 -160422010 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 39181 50 22 1 chr3 57615148 57621152 -160416006 - L1PA3 LINE L1 -24 6131 1 3093 49 2 0 chr3 57621153 57621564 -160415594 - L1P LINE L1 -2203 3943 3532 7026 57 3 0 chr3 57621564 57622693 -160414465 + L1PA3 LINE L1 5024 6155 0 1142 157 4 2 chr3 57622695 57627156 -160410002 - ALR/Alpha Satellite centromeric 0 4466 1 1142 159 2 0 chr3 57627169 57634827 -160402331 - ALR/Alpha Satellite centromeric -1 7667 1 1261 117 2 0 chr3 57634839 57641364 -160395794 - ALR/Alpha Satellite centromeric 0 6536 1 37862 58 24 3 chr3 57641467 57647486 -160389672 - L1PA3 LINE L1 -2 6153 1 1256 126 2 2 chr3 57647492 57651243 -160385915 - ALR/Alpha Satellite centromeric 0 8964 5214 2860 7 0 0 chr3 57651243 57651552 -160385606 + AluYb8 SINE Alu 1 309 -9 1256 126 2 2 chr3 57651552 57656457 -160380701 - ALR/Alpha Satellite centromeric -3750 5214 1 38180 60 26 1 chr3 57656470 57662476 -160374682 + L1PA3 LINE L1 1 6155 0 22 56 0 0 chr3 57662673 57662709 -160374449 + AT_rich Low_complexity Low_complexity 1 36 0 1157 127 0 0 chr3 57662715 57663042 -160374116 - ALR/Alpha Satellite centromeric -1 327 1 6965 28 0 0 chr3 57663043 57663914 -160373244 - L1PA2 LINE L1 -849 5297 4427 6995 39 2 0 chr3 57663914 57664765 -160372393 + L1PA2 LINE L1 5299 6153 -2 1250 123 2 0 chr3 57664765 57672514 -160364644 - ALR/Alpha Satellite centromeric 0 7759 1 1333 153 24 82 chr3 57772514 57772769 -160264389 + AluJb SINE Alu 61 300 -12 257 291 228 36 chr3 57772785 57773229 -160263929 - L2 LINE L2 -1636 1678 1150 2168 108 7 14 chr3 57773401 57773696 -160263462 + AluSx SINE Alu 1 293 -19 831 192 0 93 chr3 57773806 57773868 -160263290 - AluJo SINE Alu -136 176 110 2526 66 0 13 chr3 57773868 57774171 -160262987 + AluY SINE Alu 1 299 -12 831 192 0 93 chr3 57774171 57774301 -160262857 - AluJo SINE Alu -202 110 2 1735 188 0 13 chr3 57775203 57775501 -160261657 + AluJb SINE Alu 1 294 -18 1614 70 10 5 chr3 57775505 57775705 -160261453 + AluY SINE Alu 1 201 -110 1964 149 0 17 chr3 57775943 57776238 -160260920 - AluJo SINE Alu -22 290 1 2497 70 3 6 chr3 57776474 57776786 -160260372 - AluY SINE Alu 0 311 1 1414 203 28 14 chr3 57777261 57777547 -160259611 - AluJo SINE Alu -16 296 7 721 159 0 9 chr3 57777823 57777936 -160259222 + FLAM_C SINE Alu 13 124 -19 1306 170 0 25 chr3 57778068 57778303 -160258855 - AluJb SINE Alu 0 312 84 2296 100 0 10 chr3 57778607 57778907 -160258251 + AluSp SINE Alu 3 299 -14 26 88 0 0 chr3 57779270 57779338 -160257820 + AT_rich Low_complexity Low_complexity 1 68 0 371 252 32 38 chr3 57779338 57779505 -160257653 - MER69 DNA AcHobo -50 2476 2245 1528 167 130 0 chr3 57779505 57779775 -160257383 - AluJb SINE Alu -7 305 1 371 252 32 38 chr3 57779775 57779864 -160257294 - MER69 DNA AcHobo -281 2245 2157 1415 202 27 0 chr3 57779869 57780126 -160257032 - AluJo SINE Alu -6 306 43 2252 102 0 3 chr3 57780126 57780419 -160256739 - AluSq SINE Alu -21 292 1 286 86 52 0 chr3 57780419 57780477 -160256681 + T-rich Low_complexity Low_complexity 5 65 0 882 144 0 20 chr3 57780477 57780623 -160256535 - FLAM_C SINE Alu 0 143 1 1316 162 110 22 chr3 57780675 57780947 -160256211 - AluJo SINE Alu -16 296 1 1680 140 92 0 chr3 57780987 57781104 -160256054 + AluSx SINE Alu 1 106 -206 2350 76 3 10 chr3 57781104 57781405 -160255753 + AluY SINE Alu 3 301 -10 1000 127 67 0 chr3 57781409 57781559 -160255599 + AluSg/x SINE Alu 136 295 -15 1501 178 21 17 chr3 57781572 57781859 -160255299 + AluJb SINE Alu 1 288 -24 1515 289 108 20 chr3 57782371 57783124 -160254034 - L2 LINE L2 -346 2968 2150 265 191 181 96 chr3 57783236 57783330 -160253828 + L2 LINE L2 3207 3308 -5 439 252 19 0 chr3 57783751 57783858 -160253300 - MER81 DNA DNA 0 114 6 535 148 0 0 chr3 57785566 57785654 -160251504 + FLAM_A SINE Alu 54 141 -1 276 182 18 0 chr3 57786412 57786467 -160250691 - L1MC5 LINE L1 -101 7860 7805 1033 55 0 0 chr3 57786494 57786622 -160250536 - AluY SINE Alu -9 302 175 1967 128 4 0 chr3 57786671 57786945 -160250213 + AluSg SINE Alu 1 275 -35 7490 61 8 15 chr3 57787046 57788620 -160248538 + SVA Other Other 95 1385 -1 1864 167 27 6 chr3 57788660 57788996 -160248162 - MER66B LTR ERV1 -141 345 3 804 144 15 23 chr3 57789006 57789138 -160248020 - FLAM_C SINE Alu 0 133 3 646 247 13 0 chr3 57789159 57789313 -160247845 - MLT1F1 LTR MaLR -400 167 12 1109 138 0 33 chr3 57789473 57789638 -160247520 - AluSg/x SINE Alu -18 294 134 2160 112 0 34 chr3 57789638 57789961 -160247197 - AluSq SINE Alu -1 312 1 1109 138 0 33 chr3 57789961 57789976 -160247182 - AluSg/x SINE Alu -178 134 120 23 0 0 0 chr3 57790397 57790420 -160246738 + AT_rich Low_complexity Low_complexity 1 23 0 2160 135 0 10 chr3 57790428 57790740 -160246418 + AluSg SINE Alu 2 310 0 2286 109 3 0 chr3 57791089 57791393 -160245765 + AluSx SINE Alu 1 305 -7 402 255 137 39 chr3 57791395 57791599 -160245559 - L2 LINE L2 -978 2336 2113 2074 146 17 0 chr3 57791777 57792079 -160245079 + AluSx SINE Alu 1 307 -5 569 324 50 25 chr3 57792250 57792528 -160244630 + L1 LINE L1 4128 4412 -1734 2238 102 26 0 chr3 57792531 57792834 -160244324 - AluSx SINE Alu -1 311 1 398 266 126 40 chr3 57792889 57793111 -160244047 - MLT1L LTR MaLR -156 459 219 17896 174 50 42 chr3 57793351 57794251 -160242907 - HERVH LTR ERV1 -1855 5858 4966 2406 77 0 10 chr3 57794251 57794549 -160242609 + AluY SINE Alu 1 295 -16 17896 174 50 42 chr3 57794549 57795020 -160242138 - HERVH LTR ERV1 -2747 4966 4500 2375 92 0 3 chr3 57795020 57795324 -160241834 + AluY SINE Alu 1 303 -8 17896 174 50 42 chr3 57795324 57798189 -160238969 - HERVH LTR ERV1 -3213 4500 1589 1277 162 23 49 chr3 57798647 57798913 -160238245 - AluSq SINE Alu -54 259 1 2081 125 14 0 chr3 57799015 57799315 -160237843 - AluSx SINE Alu 0 304 1 240 111 0 0 chr3 57799341 57799386 -160237772 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 441 0 0 0 chr3 57799387 57799436 -160237722 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 1734 134 14 31 chr3 57799436 57799726 -160237432 - AluJb SINE Alu -27 285 1 28 0 0 0 chr3 57799734 57799762 -160237396 + AT_rich Low_complexity Low_complexity 1 28 0 2357 102 0 0 chr3 57799784 57800088 -160237070 - AluY SINE Alu -7 304 1 870 173 0 0 chr3 57800090 57800223 -160236935 - AluJo/FLAM SINE Alu -179 133 1 2338 109 0 0 chr3 57800230 57800534 -160236624 - AluSx SINE Alu -8 304 1 710 220 8 0 chr3 57800754 57800886 -160236272 + FLAM_A SINE Alu 1 133 0 1979 159 7 7 chr3 57801136 57801444 -160235714 - AluJb SINE Alu -4 308 1 264 77 0 0 chr3 57801475 57801514 -160235644 + (TTG)n Simple_repeat Simple_repeat 1 39 0 1421 199 36 25 chr3 57801515 57801792 -160235366 - AluJb SINE Alu -32 280 1 573 114 0 11 chr3 57801977 57802065 -160235093 - AluS SINE Alu -2 310 224 2275 114 3 0 chr3 57802806 57803103 -160234055 + AluSx SINE Alu 2 299 -13 270 327 109 6 chr3 57803989 57804154 -160233004 - L2 LINE L2 -227 3045 2864 605 126 0 72 chr3 57804464 57804575 -160232583 + MER5A DNA MER1_type 7 109 -80 1082 209 119 6 chr3 57804608 57804952 -160232206 - L1ME1 LINE L1 -5 6161 5779 973 89 0 0 chr3 57804953 57805076 -160232082 - AluSp/q SINE Alu -15 298 176 1300 159 4 49 chr3 57805081 57805307 -160231851 - AluSg/x SINE Alu -16 296 81 621 227 130 0 chr3 57805311 57805465 -160231693 - L1ME1 LINE L1 -520 5646 5473 714 169 8 0 chr3 57805473 57805591 -160231567 - FLAM_C SINE Alu -14 119 1 639 197 42 56 chr3 57805591 57805750 -160231408 - L1ME1 LINE L1 -948 5198 5041 1188 171 71 26 chr3 57805750 57805816 -160231342 - MER33 DNA MER1_type -2261 324 262 1840 135 0 40 chr3 57805816 57806119 -160231039 + AluSx SINE Alu 14 304 -8 1188 171 71 26 chr3 57806119 57806362 -160230796 - MER33 DNA MER1_type -2323 262 1 639 197 42 56 chr3 57806362 57806415 -160230743 - L1ME1 LINE L1 -1105 5041 4989 2397 90 3 0 chr3 57806415 57806725 -160230433 - AluY SINE Alu 0 311 1 1371 218 20 3 chr3 57806725 57806872 -160230286 - AluJo SINE Alu -14 298 155 2282 82 0 41 chr3 57806872 57807187 -160229971 - AluSp SINE Alu -11 302 1 1371 218 20 3 chr3 57807187 57807332 -160229826 - AluJo SINE Alu -157 155 1 1902 141 14 17 chr3 57807335 57807651 -160229507 - AluSp SINE Alu 0 313 1 2472 80 3 3 chr3 57808040 57808342 -160228816 + AluSp SINE Alu 1 302 -11 307 325 31 31 chr3 57808816 57809007 -160228151 + MIR SINE MIR 57 247 -15 2117 113 13 10 chr3 57809120 57809422 -160227736 - AluSx SINE Alu -4 308 6 2130 132 7 10 chr3 57809439 57809615 -160227543 - AluSx SINE Alu -3 309 133 276 30 0 0 chr3 57809621 57809654 -160227504 + (TATG)n Simple_repeat Simple_repeat 2 34 0 2360 102 0 7 chr3 57809654 57809950 -160227208 - AluSq SINE Alu -17 296 1 2130 132 7 10 chr3 57809950 57810083 -160227075 - AluSx SINE Alu -179 133 1 584 223 112 40 chr3 57810187 57810438 -160226720 + L1ME3 LINE L1 5864 6132 -30 195 291 63 13 chr3 57811011 57811090 -160226068 + L2 LINE L2 2956 3038 -275 2367 76 10 7 chr3 57811644 57811947 -160225211 + AluY SINE Alu 1 304 -7 1078 175 6 0 chr3 57811952 57812123 -160225035 + AluJb SINE Alu 137 308 -4 2525 70 3 0 chr3 57812431 57812731 -160224427 + AluY SINE Alu 1 301 -10 225 130 19 19 chr3 57812833 57812887 -160224271 + AluSp/q SINE Alu 250 303 0 2340 85 7 10 chr3 57812922 57813228 -160223930 + AluY SINE Alu 1 305 -6 247 220 20 0 chr3 57813384 57813434 -160223724 + MER5A DNA MER1_type 56 106 -83 2300 86 0 3 chr3 57813908 57814200 -160222958 + AluY SINE Alu 21 311 0 766 231 6 0 chr3 57814259 57814415 -160222743 + FRAM SINE Alu 1 157 -9 244 195 0 0 chr3 57814528 57814569 -160222589 - 5S rRNA rRNA -79 42 2 1582 168 44 60 chr3 57816620 57816736 -160220422 + AluJo SINE Alu 1 117 -195 2281 103 10 3 chr3 57816736 57817037 -160220121 - AluSp SINE Alu -9 304 2 1582 168 44 60 chr3 57817037 57817235 -160219923 + AluJo SINE Alu 117 310 -2 2315 95 3 3 chr3 57817340 57817636 -160219522 + AluSg SINE Alu 1 296 -14 1545 157 52 72 chr3 57818686 57818991 -160218167 + AluJo SINE Alu 1 299 -13 234 0 0 0 chr3 57820276 57820302 -160216856 + (A)n Simple_repeat Simple_repeat 1 26 0 1728 196 19 109 chr3 57820901 57820974 -160216184 - MLT2B1 LTR ERVL 0 520 442 888 143 0 50 chr3 57820974 57821114 -160216044 - FLAM_C SINE Alu 0 133 1 1728 196 19 109 chr3 57821114 57821505 -160215653 - MLT2B1 LTR ERVL -78 442 114 2092 129 7 16 chr3 57821505 57821815 -160215343 + AluSq SINE Alu 1 307 -6 1728 196 19 109 chr3 57821815 57821920 -160215238 - MLT2B1 LTR ERVL -406 114 1 827 158 72 0 chr3 57822009 57822148 -160215010 + AluJo SINE Alu 1 149 -163 2288 120 0 0 chr3 57822169 57822468 -160214690 + AluSx SINE Alu 1 299 -13 1082 146 100 129 chr3 57823032 57823155 -160214003 + AluJo SINE Alu 2 127 -175 1740 86 0 9 chr3 57823155 57823377 -160213781 - AluY SINE Alu -17 294 75 1082 146 100 129 chr3 57823377 57823562 -160213596 + AluJo SINE Alu 127 301 -1 2003 100 0 19 chr3 57823986 57824091 -160213067 + AluSc SINE Alu 31 136 -173 2245 121 10 0 chr3 57824091 57824397 -160212761 + AluSg SINE Alu 1 309 -1 2003 100 0 19 chr3 57824397 57824562 -160212596 + AluSc SINE Alu 136 296 -13 189 107 0 0 chr3 57824810 57824838 -160212320 + (T)n Simple_repeat Simple_repeat 1 28 0 1870 96 8 4 chr3 57824838 57825088 -160212070 - AluSx SINE Alu -61 251 1 181 320 24 48 chr3 57825162 57825287 -160211871 + MIR3 SINE MIR 82 203 -5 2200 106 0 0 chr3 57825332 57825648 -160211510 - AluSg SINE Alu 0 316 1 2331 106 0 7 chr3 57825713 57826016 -160211142 - AluSq SINE Alu -12 301 1 1601 96 172 8 chr3 57826139 57826389 -160210769 - AluSg SINE Alu -7 293 3 2320 81 7 17 chr3 57826413 57826711 -160210447 - AluSx SINE Alu -17 295 1 24 0 0 70 chr3 57829952 57829976 -160207182 + AT_rich Low_complexity Low_complexity 1 22 -18 2223 104 3 3 chr3 57829976 57830264 -160206894 + AluSc SINE Alu 1 288 -21 24 0 0 70 chr3 57830264 57830282 -160206876 + AT_rich Low_complexity Low_complexity 22 40 0 242 39 77 0 chr3 57830282 57830334 -160206824 + (TA)n Simple_repeat Simple_repeat 1 56 0 180 111 0 0 chr3 57831186 57831213 -160205945 + (TCC)n Simple_repeat Simple_repeat 3 29 0 21 57 0 0 chr3 57831596 57831631 -160205527 + AT_rich Low_complexity Low_complexity 1 35 0 206 275 99 22 chr3 57833445 57833536 -160203622 - L2 LINE L2 -32 3240 3143 323 161 149 12 chr3 57833900 57834023 -160203135 - L1ME1 LINE L1 -5 6161 6020 1872 99 75 0 chr3 57834024 57834306 -160202852 + AluSq SINE Alu 1 303 -10 315 0 0 0 chr3 57834316 57834351 -160202807 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1742 89 73 19 chr3 57834361 57834620 -160202538 - AluSx SINE Alu -39 273 1 2187 117 7 0 chr3 57835336 57835645 -160201513 - AluSx SINE Alu -1 311 1 189 74 0 0 chr3 57835650 57835677 -160201481 + (TCCCC)n Simple_repeat Simple_repeat 1 27 0 867 139 0 0 chr3 57835677 57835799 -160201359 - FLAM_C SINE Alu -21 122 1 282 273 13 0 chr3 57835799 57835876 -160201282 - MER58 DNA MER1_type -2306 114 37 347 355 74 9 chr3 57835900 57836117 -160201041 - L1MC4a LINE L1 -1070 6738 6508 1937 115 21 0 chr3 57836701 57836987 -160200171 + AluSx SINE Alu 1 292 -20 1108 169 128 55 chr3 57838962 57839235 -160197923 + AluJo SINE Alu 19 311 -1 191 295 62 18 chr3 57839586 57839698 -160197460 - L2 LINE L2 -290 2982 2866 23 54 0 0 chr3 57840192 57840229 -160196929 + GC_rich Low_complexity Low_complexity 1 37 0 387 60 0 0 chr3 57840901 57840951 -160196207 + (TCCC)n Simple_repeat Simple_repeat 1 50 0 258 263 29 51 chr3 57841873 57842048 -160195110 + (TCTCTG)n Simple_repeat Simple_repeat 4 174 0 * 369 0 0 0 chr3 57842015 57842107 -160195051 + (TG)n Simple_repeat Simple_repeat 1 133 0 369 0 0 0 chr3 57842107 57842148 -160195010 + (TG)n Simple_repeat Simple_repeat 2 42 0 353 248 19 45 chr3 57844742 57844899 -160192259 - L2 LINE L2 -289 2983 2831 638 298 233 39 chr3 57847633 57848385 -160188773 - L2 LINE L2 -641 2673 1776 414 240 26 45 chr3 57848494 57848648 -160188510 + FRAM SINE Alu 10 160 -16 2022 118 7 10 chr3 57848984 57849315 -160187843 - AluSx SINE Alu 0 312 1 33 0 0 0 chr3 57849320 57849353 -160187805 + AT_rich Low_complexity Low_complexity 1 33 0 2091 78 0 44 chr3 57849381 57849701 -160187457 - AluY SINE Alu 0 307 1 705 247 84 49 chr3 57850249 57850512 -160186646 - L2 LINE L2 -20 3293 3022 1053 155 0 6 chr3 57850513 57850674 -160186484 + FRAM SINE Alu 1 157 -19 649 245 18 12 chr3 57850674 57850837 -160186321 - L2 LINE L2 -276 3037 2874 1142 122 5 51 chr3 57850875 57851072 -160186086 - AluSq SINE Alu -12 301 114 2115 118 3 3 chr3 57851202 57851507 -160185651 - AluSx SINE Alu -6 306 2 2237 109 3 0 chr3 57851526 57851838 -160185320 - AluSq SINE Alu 0 313 1 1058 90 0 0 chr3 57851902 57852035 -160185123 - AluSq SINE Alu -180 133 1 721 135 68 0 chr3 57852035 57852168 -160184990 - L1ME LINE L1 -501 5665 5524 795 194 0 7 chr3 57853077 57853216 -160183942 - FLAM_C SINE Alu -5 138 1 193 269 75 97 chr3 57853295 57853429 -160183729 - MIR3 SINE MIR -40 168 38 2104 103 40 3 chr3 57853693 57853995 -160183163 - AluSp SINE Alu 0 313 1 1486 165 55 22 chr3 57854185 57854350 -160182808 - AluJb SINE Alu -31 281 102 2163 102 0 10 chr3 57854350 57854653 -160182505 + AluSx SINE Alu 1 300 -12 1486 165 55 22 chr3 57854653 57854759 -160182399 - AluJb SINE Alu -210 102 1 1024 146 0 6 chr3 57855264 57855422 -160181736 + AluJo SINE Alu 123 279 -33 23 33 0 0 chr3 57855451 57855481 -160181677 + AT_rich Low_complexity Low_complexity 1 30 0 1777 136 35 57 chr3 57855481 57855798 -160181360 + AluSx SINE Alu 1 310 -2 2417 51 7 0 chr3 57855803 57856098 -160181060 + AluY SINE Alu 1 297 -14 1879 178 0 3 chr3 57856140 57856443 -160180715 - AluJb SINE Alu -10 302 1 1763 144 6 58 chr3 57857844 57858156 -160179002 + AluJb SINE Alu 1 296 -16 186 319 14 14 chr3 57858224 57858296 -160178862 - L2 LINE L2 -208 3064 2993 893 178 91 35 chr3 57858921 57859118 -160178040 - AluJb SINE Alu -104 208 1 1025 229 83 46 chr3 57859124 57859582 -160177576 - MER69 DNA AcHobo -52 2474 2000 620 252 128 30 chr3 57859570 57859822 -160177336 - MER69 DNA AcHobo -658 568 287 * 4523 80 5 47 chr3 57859822 57860114 -160177044 + LTR10E LTR ERV1 1 304 -329 2234 104 7 7 chr3 57860114 57860422 -160176736 + AluY SINE Alu 1 308 -3 4523 80 5 47 chr3 57860422 57860790 -160176368 + LTR10E LTR ERV1 304 633 0 620 252 128 30 chr3 57860790 57860803 -160176355 - MER69 DNA AcHobo -939 287 277 358 258 86 0 chr3 57860901 57861029 -160176129 + LTR16A LTR ERVL 307 445 -5 345 294 20 0 chr3 57861018 57861120 -160176038 - MER69 DNA AcHobo -2229 297 194 * 720 170 36 0 chr3 57861127 57861239 -160175919 - FLAM_C SINE Alu -16 117 2 572 231 36 44 chr3 57861240 57861414 -160175744 + L1M4 LINE L1 1109 1282 -5260 2303 86 7 0 chr3 57861414 57861715 -160175443 + AluY SINE Alu 1 303 -8 572 231 36 44 chr3 57861715 57861765 -160175393 + L1M4 LINE L1 1282 1331 -5211 703 250 10 48 chr3 57861775 57861942 -160175216 + L1M4 LINE L1 2630 2783 -3861 1866 161 16 10 chr3 57861942 57862252 -160174906 + AluJb SINE Alu 1 312 0 703 250 10 48 chr3 57862252 57862376 -160174782 + L1M4 LINE L1 2783 2910 -3734 2116 95 0 20 chr3 57862381 57862675 -160174483 - AluSx SINE Alu -19 293 6 642 103 18 57 chr3 57862687 57862852 -160174306 - AluSg/x SINE Alu 0 312 122 1873 126 23 0 chr3 57863476 57863777 -160173381 - AluSq SINE Alu -5 308 1 684 186 16 16 chr3 57863799 57863923 -160173235 - FRAM SINE Alu -31 145 22 22 0 0 0 chr3 57864095 57864117 -160173041 + AT_rich Low_complexity Low_complexity 1 22 0 628 325 107 35 chr3 57864123 57864581 -160172577 - L2 LINE L2 -688 2626 2136 257 325 13 0 chr3 57864678 57864755 -160172403 - L2 LINE L2 -1 3312 3235 1407 156 111 31 chr3 57866036 57866324 -160170834 - AluJb SINE Alu -1 311 1 642 210 0 0 chr3 57866738 57866857 -160170301 - FLAM_A SINE Alu -13 129 11 2296 102 0 10 chr3 57867273 57867578 -160169580 - AluSq SINE Alu -11 302 1 2039 131 0 7 chr3 57867583 57867889 -160169269 - AluSx SINE Alu -8 304 1 1676 132 83 0 chr3 57868659 57868925 -160168233 + AluJo SINE Alu 11 298 -14 1477 113 15 0 chr3 57868997 57869200 -160167958 - AluSx SINE Alu -105 207 2 1028 223 118 52 chr3 57869201 57869518 -160167640 - L1ME LINE L1 -393 5769 5408 1802 178 0 0 chr3 57869518 57869810 -160167348 - AluSx SINE Alu -20 292 1 1028 223 118 52 chr3 57869810 57869976 -160167182 - L1ME LINE L1 -754 5408 5254 400 333 34 0 chr3 57869999 57870116 -160167042 - L1ME LINE L1 -942 5204 5084 1761 156 3 7 chr3 57870147 57870436 -160166722 + AluJb SINE Alu 1 288 -24 22 35 0 0 chr3 57870437 57870466 -160166692 + AT_rich Low_complexity Low_complexity 1 29 0 274 65 290 16 chr3 57870474 57870536 -160166622 + FAM SINE Alu 100 178 -1 2291 101 0 3 chr3 57870569 57870877 -160166281 + AluSc SINE Alu 1 307 -2 370 264 101 0 chr3 57870905 57871053 -160166105 - L1ME LINE L1 -1095 5051 4889 242 284 108 0 chr3 57871124 57871226 -160165932 - L1ME LINE L1 -1276 4870 4758 1106 145 59 36 chr3 57871228 57871449 -160165709 - AluJo SINE Alu -1 311 86 2274 64 20 3 chr3 57871494 57871789 -160165369 - AluY SINE Alu -11 300 1 803 242 61 97 chr3 57871789 57871921 -160165237 - L1ME LINE L1 -1529 4617 4482 1805 156 9 34 chr3 57871921 57872097 -160165061 - AluSx SINE Alu 0 312 146 2386 66 0 10 chr3 57872097 57872398 -160164760 - AluY SINE Alu -13 298 1 1805 156 9 34 chr3 57872398 57872541 -160164617 - AluSx SINE Alu -166 146 1 803 242 61 97 chr3 57872541 57872692 -160164466 - L1ME LINE L1 -1664 4482 4327 1752 95 4 0 chr3 57872692 57872924 -160164234 - AluSq SINE Alu -78 235 3 803 242 61 97 chr3 57872924 57873164 -160163994 - L1ME LINE L1 -1819 4327 4112 570 279 180 4 chr3 57873164 57873320 -160163838 - L2 LINE L2 -2078 1236 1109 2416 70 0 13 chr3 57873320 57873634 -160163524 + AluY SINE Alu 1 310 -1 570 279 180 4 chr3 57873634 57873749 -160163409 - L2 LINE L2 -2205 1109 917 816 114 0 0 chr3 57873991 57874105 -160163053 + AluSq/x SINE Alu 1 114 -199 462 97 0 0 chr3 57874120 57874192 -160162966 + Alu SINE Alu 235 306 -6 218 333 29 98 chr3 57874538 57874853 -160162305 + L2 LINE L2 2890 3182 -90 1690 163 57 0 chr3 57874871 57875153 -160162005 + AluJo SINE Alu 2 299 -13 272 281 29 23 chr3 57876835 57877006 -160160152 + G-rich Low_complexity Low_complexity 2 173 0 180 302 63 0 chr3 57879568 57879631 -160157527 - L2 LINE L2 -1363 1951 1885 203 286 165 33 chr3 57881455 57881546 -160155612 - L2 LINE L2 -4 3309 3207 195 42 0 0 chr3 57881620 57881644 -160155514 + (TG)n Simple_repeat Simple_repeat 2 25 0 346 192 10 36 chr3 57891929 57892240 -160144918 + CT-rich Low_complexity Low_complexity 1 302 0 452 298 0 22 chr3 57892284 57892462 -160144696 + C-rich Low_complexity Low_complexity 3 176 0 225 227 0 30 chr3 57895096 57895162 -160141996 + (TCTCTG)n Simple_repeat Simple_repeat 6 69 0 246 116 0 0 chr3 57895236 57895279 -160141879 + (TC)n Simple_repeat Simple_repeat 2 44 0 208 347 61 14 chr3 57900565 57900712 -160136446 - L2 LINE L2 -1229 2085 1932 564 315 65 9 chr3 57900931 57901147 -160136011 + MIR SINE MIR 15 242 -20 208 291 0 39 chr3 57911202 57911305 -160125853 + C-rich Low_complexity Low_complexity 4 102 0 1088 164 6 0 chr3 57911975 57912140 -160125018 + FAM SINE Alu 3 168 -7 1736 132 35 0 chr3 57914274 57914532 -160122626 + AluSx SINE Alu 1 267 -45 242 282 10 68 chr3 57914671 57914774 -160122384 + MIR SINE MIR 103 199 -63 232 29 0 29 chr3 57914777 57914811 -160122347 + AluY SINE Alu 21 53 -80 1165 157 0 35 chr3 57914812 57915010 -160122148 + AluSg/x SINE Alu 99 289 -21 277 315 102 9 chr3 57915255 57915363 -160121795 + L2 LINE L2 3191 3308 -5 213 279 200 18 chr3 57915358 57915523 -160121635 - L2 LINE L2 -105 3208 3014 * 1052 171 0 0 chr3 57915849 57916019 -160121139 - AluJb SINE Alu -11 301 132 2080 114 4 0 chr3 57916039 57916319 -160120839 - AluSx SINE Alu -31 281 1 1980 139 0 29 chr3 57916327 57916637 -160120521 - AluY SINE Alu -10 301 1 1959 116 46 0 chr3 57916637 57916921 -160120237 - AluSp SINE Alu -16 297 1 1879 178 0 3 chr3 57917296 57917599 -160119559 - AluJb SINE Alu -10 302 1 1763 144 6 58 chr3 57919005 57919317 -160117841 + AluJb SINE Alu 1 296 -16 186 319 14 14 chr3 57919385 57919457 -160117701 - L2 LINE L2 -208 3064 2993 893 178 91 35 chr3 57920082 57920279 -160116879 - AluJb SINE Alu -104 208 1 1025 229 83 46 chr3 57920285 57920743 -160116415 - MER69 DNA AcHobo -52 2474 2000 620 252 128 30 chr3 57920731 57920983 -160116175 - MER69 DNA AcHobo -658 568 287 * 4523 80 5 47 chr3 57920983 57921275 -160115883 + LTR10E LTR ERV1 1 304 -329 2234 104 7 7 chr3 57921275 57921583 -160115575 + AluY SINE Alu 1 308 -3 4523 80 5 47 chr3 57921583 57921951 -160115207 + LTR10E LTR ERV1 304 633 0 620 252 128 30 chr3 57921951 57921964 -160115194 - MER69 DNA AcHobo -939 287 277 358 258 86 0 chr3 57922062 57922190 -160114968 + LTR16A LTR ERVL 307 445 -5 345 294 20 0 chr3 57922179 57922281 -160114877 - MER69 DNA AcHobo -2229 297 194 * 720 170 36 0 chr3 57922288 57922400 -160114758 - FLAM_C SINE Alu -16 117 2 572 231 36 44 chr3 57922401 57922575 -160114583 + L1M4 LINE L1 1109 1282 -5260 2303 86 7 0 chr3 57922575 57922876 -160114282 + AluY SINE Alu 1 303 -8 572 231 36 44 chr3 57922876 57922926 -160114232 + L1M4 LINE L1 1282 1331 -5211 973 247 28 55 chr3 57922936 57923103 -160114055 + L1M4 LINE L1 2630 2800 -3844 1866 161 16 10 chr3 57923103 57923413 -160113745 + AluJb SINE Alu 1 312 0 973 247 28 55 chr3 57923413 57923542 -160113616 + L1M4 LINE L1 2800 2931 -3713 2141 101 0 17 chr3 57923542 57923703 -160113455 - AluY SINE Alu -19 292 137 2768 3 0 13 chr3 57923703 57924017 -160113141 - AluYa5 SINE Alu 0 311 2 2141 101 0 17 chr3 57924017 57924152 -160113006 - AluY SINE Alu -174 137 1 1922 81 4 0 chr3 57924152 57924398 -160112760 - AluSp SINE Alu -17 296 50 973 247 28 55 chr3 57924398 57924557 -160112601 + L1M4 LINE L1 2929 3075 -3569 2127 96 7 13 chr3 57924559 57924861 -160112297 + AluSq SINE Alu 4 303 -10 829 163 7 22 chr3 57924861 57924996 -160112162 + AluJb SINE Alu 2 134 -178 214 289 170 0 chr3 57925285 57925444 -160111714 + L2 LINE L2 1893 2078 -1236 1525 165 11 25 chr3 57925501 57925780 -160111378 + AluJb SINE Alu 38 312 0 370 51 0 34 chr3 57925780 57925839 -160111319 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 2174 90 17 0 chr3 57925845 57926135 -160111023 + AluSp SINE Alu 1 295 -18 2131 84 53 0 chr3 57926135 57926419 -160110739 + AluSc SINE Alu 1 299 -10 1380 150 5 0 chr3 57926425 57926632 -160110526 + AluJb SINE Alu 3 210 -102 1136 161 63 109 chr3 57926649 57926934 -160110224 + AluJb SINE Alu 29 300 -12 3219 146 92 26 chr3 57926934 57927318 -160109840 + MER49 LTR ERV1 188 545 -378 2277 95 0 3 chr3 57927318 57927624 -160109534 - AluSc SINE Alu -4 305 1 3219 146 92 26 chr3 57927624 57927763 -160109395 + MER49 LTR ERV1 545 673 -250 2318 85 3 3 chr3 57927763 57928069 -160109089 - AluSg SINE Alu -4 306 1 3219 146 92 26 chr3 57928069 57928196 -160108962 + MER49 LTR ERV1 673 882 -41 1029 132 6 18 chr3 57928196 57928363 -160108795 + AluJo SINE Alu 1 165 -147 713 147 0 0 chr3 57928428 57928530 -160108628 + AluSx SINE Alu 6 107 -206 1544 154 133 3 chr3 57928535 57928865 -160108293 + LTR64 LTR ERVK 186 558 0 2444 59 16 0 chr3 57928886 57929191 -160107967 - AluSp SINE Alu -3 310 1 813 92 0 0 chr3 57929222 57929331 -160107827 - AluSq/x SINE Alu -204 109 1 1404 82 82 0 chr3 57929373 57929579 -160107579 + AluSx SINE Alu 90 312 0 183 292 69 0 chr3 57930720 57930792 -160106366 - MIR SINE MIR -91 171 95 290 288 22 43 chr3 57931157 57931341 -160105817 - MER104 DNA Tc2 0 180 1 672 243 46 63 chr3 57931361 57931498 -160105660 + L1PB4 LINE L1 5894 6027 -129 2031 116 10 0 chr3 57931498 57931792 -160105366 + AluSx SINE Alu 3 299 -13 672 243 46 63 chr3 57931792 57931893 -160105265 + L1PB4 LINE L1 6027 6128 -28 833 222 0 12 chr3 57931895 57932066 -160105092 + FRAM SINE Alu 1 169 -7 2155 88 10 14 chr3 57932143 57932277 -160104881 + AluSc SINE Alu 1 134 -175 2489 57 0 16 chr3 57932277 57932592 -160104566 + AluY SINE Alu 1 310 -1 2155 88 10 14 chr3 57932592 57932751 -160104407 + AluSc SINE Alu 134 293 -16 2158 109 16 3 chr3 57932849 57933152 -160104006 - AluSg SINE Alu -3 307 1 2110 129 3 0 chr3 57936796 57937099 -160100059 + AluSq SINE Alu 1 304 -9 2441 54 0 3 chr3 57937268 57937565 -160099593 + AluY SINE Alu 1 296 -15 234 344 0 33 chr3 57941909 57942031 -160095127 - L2 LINE L2 -509 2805 2688 198 118 0 0 chr3 57956409 57956443 -160080715 + (TC)n Simple_repeat Simple_repeat 2 35 0 204 323 40 40 chr3 57961440 57961564 -160075594 - MIR SINE MIR -118 144 21 2411 64 0 3 chr3 57961690 57961987 -160075171 - AluY SINE Alu -15 296 1 2159 101 3 0 chr3 57962039 57962326 -160074832 + AluSx SINE Alu 11 298 -14 868 66 0 0 chr3 57965002 57965108 -160072050 + AluSq/x SINE Alu 1 106 -206 528 122 0 0 chr3 57965108 57965207 -160071951 + AluSg/x SINE Alu 207 305 0 2150 110 0 26 chr3 57965209 57965518 -160071640 + AluSx SINE Alu 1 301 -11 1235 213 16 57 chr3 57965518 57965585 -160071573 + MLT1C LTR MaLR 116 184 -283 2307 83 3 7 chr3 57965585 57965886 -160071272 + AluSg SINE Alu 1 300 -10 1235 213 16 57 chr3 57965886 57966184 -160070974 + MLT1C LTR MaLR 184 466 -1 344 82 0 0 chr3 57966694 57966743 -160070415 + AluSp/q SINE Alu 169 217 -86 950 159 0 79 chr3 57966745 57966934 -160070224 - AluSp SINE Alu -6 307 134 1069 165 0 12 chr3 57966951 57967121 -160070037 + AluJb SINE Alu 130 297 -15 4167 144 28 39 chr3 57967138 57967336 -160069822 + L1MB3 LINE L1 5415 5614 -569 2141 101 0 17 chr3 57967336 57967659 -160069499 + AluSx SINE Alu 1 312 0 4167 144 28 39 chr3 57967659 57967880 -160069278 + L1MB3 LINE L1 5614 5836 -347 1463 192 48 7 chr3 57967880 57968171 -160068987 + AluJo SINE Alu 1 303 -9 4167 144 28 39 chr3 57968171 57968346 -160068812 + L1MB3 LINE L1 5836 6003 -180 1030 196 0 22 chr3 57968346 57968525 -160068633 - FAM SINE Alu 0 175 1 4167 144 28 39 chr3 57968525 57968705 -160068453 + L1MB3 LINE L1 6003 6183 0 337 228 126 44 chr3 57968795 57968884 -160068274 + L1MEc LINE L1 26 106 -6290 2116 129 3 0 chr3 57968884 57969193 -160067965 + AluSq SINE Alu 1 310 -3 337 228 126 44 chr3 57969193 57969309 -160067849 + L1MEc LINE L1 106 248 -6148 840 273 47 38 chr3 57969314 57969783 -160067375 + L1MEc LINE L1 982 1454 -4942 1406 162 0 4 chr3 57969783 57970012 -160067146 + AluJo SINE Alu 85 312 0 239 198 31 62 chr3 57970015 57970111 -160067047 + L1MCa LINE L1 1477 1569 -4857 2192 105 3 0 chr3 57970125 57970419 -160066739 - AluSq SINE Alu -17 296 2 393 274 34 27 chr3 57970480 57970626 -160066532 + LTR33 LTR ERVL 66 212 -309 354 378 114 5 chr3 57972807 57972828 -160064330 - L1ME4a LINE L1 -153 5968 5951 2226 117 0 3 chr3 57972828 57973136 -160064022 - AluJb SINE Alu -5 307 1 354 378 114 5 chr3 57973136 57973307 -160063851 - L1ME4a LINE L1 -170 5951 5755 907 253 32 18 chr3 57973320 57973541 -160063617 + MER58A DNA MER1_type 1 224 0 564 349 131 8 chr3 57975430 57975797 -160061361 + HAL1 LINE L1 6 417 -2090 255 152 76 0 chr3 57975833 57975899 -160061259 - FRAM/FAM SINE Alu -97 69 1 1066 149 0 46 chr3 57975911 57976085 -160061073 - AluJo/FRAM SINE Alu 0 302 137 2309 77 0 7 chr3 57976088 57976386 -160060772 - AluSg SINE Alu -14 296 1 1410 157 122 4 chr3 57976398 57976522 -160060636 - AluJo SINE Alu -14 298 190 1668 87 0 9 chr3 57976522 57976740 -160060418 - AluY SINE Alu -95 216 1 1410 157 122 4 chr3 57976740 57976877 -160060281 - AluJo SINE Alu -122 190 6 1162 249 101 68 chr3 57976892 57976995 -160060163 + HAL1 LINE L1 822 920 -1587 1744 187 7 0 chr3 57976995 57977295 -160059863 + AluJo SINE Alu 1 302 -10 1162 249 101 68 chr3 57977295 57977376 -160059782 + HAL1 LINE L1 920 997 -1510 2236 74 40 0 chr3 57977376 57977673 -160059485 + AluY SINE Alu 1 309 -2 1162 249 101 68 chr3 57977673 57978413 -160058745 + HAL1 LINE L1 997 1953 -554 1231 115 16 0 chr3 57979319 57979501 -160057657 - AluSg/x SINE Alu -5 307 123 1463 145 5 0 chr3 57979751 57979972 -160057186 - AluJo SINE Alu -4 308 87 2031 130 0 10 chr3 57980036 57980335 -160056823 - AluSx SINE Alu -16 296 1 2093 123 3 3 chr3 57980442 57980743 -160056415 - AluSx SINE Alu -11 301 1 790 196 0 0 chr3 57980945 57981078 -160056080 - FLAM_C SINE Alu 0 133 1 222 37 0 0 chr3 57981319 57981346 -160055812 + (TG)n Simple_repeat Simple_repeat 2 28 0 238 356 7 15 chr3 57981587 57981722 -160055436 + (TG)n Simple_repeat Simple_repeat 1 134 0 3129 172 25 27 chr3 57981871 57982434 -160054724 + MER68 LTR ERV1 1 562 0 205 346 20 26 chr3 57982609 57982762 -160054396 + (TG)n Simple_repeat Simple_repeat 2 153 0 2014 128 7 3 chr3 57982795 57983085 -160054073 - AluSx SINE Alu -21 291 1 259 218 103 46 chr3 57983372 57983459 -160053699 + MIR SINE MIR 80 171 -91 764 159 0 36 chr3 57983670 57983808 -160053350 + AluSg/x SINE Alu 178 310 0 358 280 50 0 chr3 57983888 57983988 -160053170 + MIR SINE MIR 46 150 -58 205 343 0 0 chr3 57986013 57986083 -160051075 + L2 LINE L2 2982 3051 -262 2272 101 0 3 chr3 57986521 57986828 -160050330 - AluSx SINE Alu -6 306 1 2088 107 0 32 chr3 57986832 57987141 -160050017 - AluSx SINE Alu 0 312 14 220 217 326 0 chr3 57987389 57987481 -160049677 + MIR SINE MIR 24 145 -117 2241 95 7 0 chr3 57988501 57988797 -160048361 + AluSx SINE Alu 1 298 -14 1951 139 7 0 chr3 57990079 57990380 -160046778 + AluSq SINE Alu 1 303 -10 1576 141 7 54 chr3 57990934 57991231 -160045927 + AluJo SINE Alu 14 296 -16 224 222 0 2 chr3 57991545 57991591 -160045567 - MIR SINE MIR -88 120 76 2338 68 0 0 chr3 57992851 57993145 -160044013 - AluSq SINE Alu -19 294 1 255 345 43 0 chr3 57994660 57994776 -160042382 - MIR SINE MIR -62 146 26 450 0 0 0 chr3 57995207 57995257 -160041901 + (CA)n Simple_repeat Simple_repeat 1 50 0 701 210 7 7 chr3 57995257 57995395 -160041763 - FRAM SINE Alu -38 138 1 264 269 0 0 chr3 57995444 57995522 -160041636 + (CA)n Simple_repeat Simple_repeat 1 78 0 295 293 26 26 chr3 57997127 57997243 -160039915 - MIR SINE MIR -62 146 31 226 233 10 58 chr3 57998496 57998599 -160038559 + (CAGAGA)n Simple_repeat Simple_repeat 5 102 0 327 297 146 32 chr3 57998619 57998804 -160038354 + L1MEd LINE L1 973 1178 -4941 507 299 6 0 chr3 58000989 58001166 -160035992 + GA-rich Low_complexity Low_complexity 2 179 0 483 201 0 0 chr3 58009365 58009509 -160027649 + (CA)n Simple_repeat Simple_repeat 1 144 0 2232 89 14 0 chr3 58013195 58013487 -160023671 + AluSp SINE Alu 1 296 -17 198 118 0 0 chr3 58018483 58018517 -160018641 + (GA)n Simple_repeat Simple_repeat 2 35 0 591 168 0 0 chr3 58027519 58027614 -160009544 - AluS SINE Alu -218 95 1 347 346 142 34 chr3 58027663 58028050 -160009108 - L2 LINE L2 -1 3312 2884 442 384 15 15 chr3 58028059 58028257 -160008901 + HAL1 LINE L1 1123 1320 -1187 1735 111 0 139 chr3 58028268 58028627 -160008531 + AluSc SINE Alu 1 309 0 303 243 10 19 chr3 58028693 58028796 -160008362 + HAL1b LINE L1 320 421 -927 230 216 40 14 chr3 58028982 58029056 -160008102 + MER116 DNA Mariner 1 76 -4 306 0 0 0 chr3 58029238 58029272 -160007886 + (T)n Simple_repeat Simple_repeat 1 34 0 2656 154 14 41 chr3 58029272 58029995 -160007163 - HERVH LTR ERV1 -6693 1020 1 1466 208 80 52 chr3 58029996 58030342 -160006816 - LTR7 LTR ERV1 0 450 88 2413 83 0 10 chr3 58030342 58030654 -160006504 + AluY SINE Alu 1 309 -2 1466 208 80 52 chr3 58030654 58030745 -160006413 - LTR7 LTR ERV1 -362 88 1 742 123 0 0 chr3 58030745 58030851 -160006307 + AluSg/x SINE Alu 202 307 -2 2149 90 38 0 chr3 58030858 58031147 -160006011 + AluSp SINE Alu 1 300 -13 2007 92 0 86 chr3 58031147 58031472 -160005686 + AluSg SINE Alu 1 297 -13 595 147 0 11 chr3 58031482 58031577 -160005581 + AluSg SINE Alu 34 127 -183 1299 157 21 84 chr3 58031581 58031733 -160005425 + AluJo SINE Alu 6 133 -179 2158 112 0 3 chr3 58031733 58032029 -160005129 + AluSg SINE Alu 1 295 -15 1299 157 21 84 chr3 58032029 58032163 -160004995 + AluJo SINE Alu 133 274 -38 198 102 20 41 chr3 58032185 58032234 -160004924 + (TA)n Simple_repeat Simple_repeat 1 48 0 2219 102 3 34 chr3 58032283 58032605 -160004553 + AluSx SINE Alu 1 312 0 372 303 34 39 chr3 58032606 58032806 -160004352 + L1ME LINE L1 5475 5667 -454 2420 67 0 0 chr3 58032806 58033104 -160004054 + AluY SINE Alu 1 298 -13 372 303 34 39 chr3 58033104 58033227 -160003931 + L1ME LINE L1 5667 5789 -332 800 221 208 31 chr3 58033231 58033548 -160003610 - MLT1G1 LTR MaLR -7 588 216 370 218 20 10 chr3 58033550 58033651 -160003507 - MER66B LTR ERV1 0 486 385 657 48 8 57 chr3 58033665 58033789 -160003369 + SVA Other Other 1 118 -1268 294 241 23 11 chr3 58236226 58236313 -159800845 + L1ME3A LINE L1 6031 6118 -52 2252 105 3 10 chr3 58236317 58236621 -159800537 - AluSx SINE Alu -10 302 1 1176 149 65 10 chr3 58236653 58236854 -159800304 + AluSg/x SINE Alu 88 299 -11 288 296 30 30 chr3 58237121 58237253 -159799905 - MLT1J LTR MaLR -4 507 376 634 251 87 19 chr3 58237279 58237486 -159799672 - MLT1J LTR MaLR -290 221 1 2266 90 21 0 chr3 58237806 58238095 -159799063 - AluSg SINE Alu -15 295 1 2298 113 3 0 chr3 58239277 58239569 -159797589 + AluSg SINE Alu 1 293 -17 258 323 11 11 chr3 58239648 58239741 -159797417 + MIR3 SINE MIR 91 183 -25 2119 116 23 17 chr3 58240094 58240396 -159796762 - AluSq SINE Alu -7 306 3 195 69 0 0 chr3 58240398 58240427 -159796731 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1933 99 18 18 chr3 58240427 58240709 -159796449 - AluY SINE Alu -29 282 1 2269 116 0 0 chr3 58240709 58241003 -159796155 - AluSx SINE Alu -14 298 5 960 153 5 70 chr3 58241017 58241232 -159795926 - AluJb SINE Alu 0 312 112 180 0 0 0 chr3 58241403 58241423 -159795735 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2101 100 4 14 chr3 58241431 58241712 -159795446 - AluSq SINE Alu -35 278 1 2355 100 7 0 chr3 58241873 58242174 -159794984 - AluSg SINE Alu -7 303 1 2590 61 0 0 chr3 58242590 58242887 -159794271 + AluY SINE Alu 1 297 -14 2076 110 0 0 chr3 58243850 58244123 -159793035 + AluSg SINE Alu 29 301 -9 2253 62 0 22 chr3 58244324 58244599 -159792559 + AluY SINE Alu 3 271 -40 653 68 0 0 chr3 58244599 58244687 -159792471 + AluY SINE Alu 212 299 -12 2568 63 0 0 chr3 58244687 58244990 -159792168 + AluY SINE Alu 1 303 -8 2189 101 7 23 chr3 58244994 58245300 -159791858 + AluSg SINE Alu 1 301 -9 2226 103 24 0 chr3 58246314 58246605 -159790553 + AluY SINE Alu 1 298 -13 2215 106 7 7 chr3 58246779 58247082 -159790076 + AluSg SINE Alu 1 303 -7 2144 112 11 0 chr3 58247179 58247494 -159789664 - AluSq SINE Alu 0 318 1 654 191 0 0 chr3 58247651 58247766 -159789392 + AluJo/FLAM SINE Alu 2 116 -186 2451 93 7 0 chr3 58247766 58248068 -159789090 - AluSq SINE Alu -9 304 1 1941 156 20 0 chr3 58248123 58248418 -159788740 - AluSq SINE Alu -12 301 1 994 102 0 0 chr3 58248424 58248551 -159788607 - AluJb SINE Alu -173 139 13 1894 107 9 101 chr3 58248787 58249132 -159788026 - AluSq SINE Alu 0 313 1 885 134 0 47 chr3 58249254 58249388 -159787770 + FLAM_C SINE Alu 1 140 -172 2234 113 0 0 chr3 58249388 58249672 -159787486 + AluSq SINE Alu 1 284 -29 2324 73 0 55 chr3 58249672 58250001 -159787157 + AluY SINE Alu 1 311 0 885 134 0 47 chr3 58250001 58250014 -159787144 + FLAM_C SINE Alu 138 142 -170 195 100 0 0 chr3 58250868 58250898 -159786260 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 1627 120 5 0 chr3 58250909 58251125 -159786033 + AluSx SINE Alu 3 219 -93 594 165 18 0 chr3 58251125 58251234 -159785924 + AluSg/x SINE Alu 188 298 -14 2171 118 7 0 chr3 58251307 58251604 -159785554 - AluSp SINE Alu -14 299 1 999 194 17 11 chr3 58252170 58252345 -159784813 - AluJo SINE Alu -24 288 113 339 169 0 40 chr3 58252348 58252423 -159784735 - Alu SINE Alu -258 50 1 22 0 0 0 chr3 58252643 58252665 -159784493 + AT_rich Low_complexity Low_complexity 1 22 0 822 161 0 0 chr3 58252665 58252783 -159784375 - FLAM_C SINE Alu -25 118 1 725 154 13 60 chr3 58253520 58253669 -159783489 + FLAM_C SINE Alu 2 143 0 1094 149 0 11 chr3 58253980 58254161 -159782997 - AluSp SINE Alu -13 300 122 509 155 10 39 chr3 58254374 58254477 -159782681 - FLAM_C SINE Alu -26 117 18 2160 104 11 4 chr3 58254557 58254835 -159782323 + AluSg SINE Alu 1 280 -30 2193 89 38 14 chr3 58257128 58257421 -159779737 + AluSc SINE Alu 1 300 -9 1478 155 4 16 chr3 58257896 58258147 -159779011 - AluSx SINE Alu -9 303 56 2092 108 0 36 chr3 58258370 58258677 -159778481 + AluSx SINE Alu 15 310 -2 2844 28 0 6 chr3 58258993 58259311 -159777847 + AluYb8 SINE Alu 1 316 -2 2055 133 0 27 chr3 58259370 58259671 -159777487 + AluSx SINE Alu 1 293 -19 2525 71 0 0 chr3 58259673 58259970 -159777188 + AluY SINE Alu 1 297 -14 206 211 178 56 chr3 58260096 58260186 -159776972 - L2 LINE L2 -925 2389 2289 202 303 40 30 chr3 58260541 58260640 -159776518 + MER5A DNA MER1_type 44 143 -46 1905 108 101 7 chr3 58260992 58261269 -159775889 - AluSx SINE Alu -9 303 1 1598 179 24 21 chr3 58261758 58261882 -159775276 + AluJo SINE Alu 7 129 -183 2135 113 38 0 chr3 58261882 58262174 -159774984 + AluSg SINE Alu 1 303 -7 1598 179 24 21 chr3 58262174 58262340 -159774818 + AluJo SINE Alu 129 298 -14 854 187 18 24 chr3 58262449 58262615 -159774543 + AluJb SINE Alu 137 301 -11 1491 113 0 61 chr3 58262624 58262689 -159774469 + AluSg/x SINE Alu 80 147 -163 1831 133 4 0 chr3 58262689 58262938 -159774220 + AluSx SINE Alu 49 298 -14 1491 113 0 61 chr3 58262938 58263102 -159774056 + AluSg/x SINE Alu 147 295 -15 181 138 0 0 chr3 58263121 58263150 -159774008 + L3 LINE CR1 327 355 -1222 725 111 0 0 chr3 58264307 58264406 -159772752 + AluS SINE Alu 2 100 -213 1103 121 0 0 chr3 58264523 58264695 -159772463 + AluSg/x SINE Alu 140 311 0 2054 102 7 41 chr3 58265529 58265823 -159771335 - AluSg SINE Alu -21 289 6 883 89 27 34 chr3 58265825 58265971 -159771187 - AluSp SINE Alu -168 145 1 2015 136 7 3 chr3 58265982 58266290 -159770868 - AluJb SINE Alu -3 309 1 22 0 0 0 chr3 58267654 58267676 -159769482 + GC_rich Low_complexity Low_complexity 1 22 0 214 221 94 71 chr3 58267747 58267874 -159769284 + MIR SINE MIR 76 205 -57 2383 82 7 3 chr3 58268195 58268498 -159768660 - AluSq SINE Alu -9 304 1 2360 89 3 9 chr3 58268671 58268986 -159768172 - AluSp SINE Alu 0 313 1 2364 82 10 0 chr3 58269354 58269647 -159767511 + AluSp SINE Alu 1 296 -17 2330 107 0 10 chr3 58269702 58270010 -159767148 + AluSq SINE Alu 1 305 -8 2382 104 0 0 chr3 58270012 58270311 -159766847 + AluSx SINE Alu 1 299 -13 2327 106 3 6 chr3 58271412 58271723 -159765435 - AluSg SINE Alu 0 310 1 2262 132 3 0 chr3 58271732 58272043 -159765115 - AluSx SINE Alu 0 312 1 963 94 0 0 chr3 58272043 58272181 -159764977 + Tigger1 DNA MER2_type 1759 1896 -522 2253 97 10 0 chr3 58272251 58272541 -159764617 - AluSg SINE Alu -17 293 1 2172 109 0 10 chr3 58273072 58273365 -159763793 - AluSg SINE Alu -20 290 1 2373 31 28 11 chr3 58274082 58274369 -159762789 + AluY SINE Alu 15 306 -5 2677 58 0 6 chr3 58275039 58275352 -159761806 + AluY SINE Alu 1 311 0 186 43 0 0 chr3 58276211 58276234 -159760924 + (CCCCG)n Simple_repeat Simple_repeat 1 23 0 180 0 0 0 chr3 58276455 58276475 -159760683 + (CCG)n Simple_repeat Simple_repeat 3 22 0 2060 103 41 7 chr3 58278682 58278972 -159758186 - AluSq SINE Alu -13 300 1 2167 117 7 7 chr3 58279008 58279316 -159757842 + AluSc SINE Alu 1 308 -1 2218 109 14 0 chr3 58279815 58280108 -159757050 + AluSp SINE Alu 3 299 -14 2084 119 7 3 chr3 58280120 58280413 -159756745 + AluSx SINE Alu 1 294 -18 2409 65 14 7 chr3 58281351 58281642 -159755516 + AluY SINE Alu 1 293 -18 1304 203 3 75 chr3 58281667 58281790 -159755368 + AluJo SINE Alu 1 131 -181 2030 139 0 14 chr3 58281790 58282084 -159755074 + AluSx SINE Alu 7 296 -16 1304 203 3 75 chr3 58282084 58282280 -159754878 + AluJo SINE Alu 131 297 -15 2140 111 0 17 chr3 58282282 58282419 -159754739 + AluSx SINE Alu 1 139 -173 2336 91 7 3 chr3 58282419 58282726 -159754432 + AluSp SINE Alu 2 309 -4 1287 120 0 48 chr3 58282667 58282876 -159754282 + AluSg/x SINE Alu 83 316 0 2140 111 0 17 chr3 58282726 58282876 -159754282 + AluSx SINE Alu 139 283 -29 261 0 57 0 chr3 58282876 58282911 -159754247 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 2072 123 40 10 chr3 58282911 58283213 -159753945 + AluSq SINE Alu 1 311 -2 337 253 0 0 chr3 58283429 58283504 -159753654 + AluSp/q SINE Alu 225 299 -4 1679 140 10 41 chr3 58283508 58283718 -159753440 - Tigger1 DNA MER2_type -1154 1264 1066 1810 143 19 62 chr3 58283718 58283858 -159753300 + AluJb SINE Alu 1 145 -167 2135 118 0 14 chr3 58283858 58284168 -159752990 + AluSx SINE Alu 1 306 0 1810 143 19 62 chr3 58284168 58284331 -159752827 + AluJb SINE Alu 145 294 -18 1679 140 10 41 chr3 58284331 58284434 -159752724 - Tigger1 DNA MER2_type -1352 1066 961 918 106 0 0 chr3 58284434 58284547 -159752611 + AluSq/x SINE Alu 1 113 -199 189 26 51 26 chr3 58284565 58284604 -159752554 + (TAAAAA)n Simple_repeat Simple_repeat 2 41 0 1454 180 16 28 chr3 58284617 58284867 -159752291 + AluJb SINE Alu 3 249 -63 435 97 0 42 chr3 58284940 58285012 -159752146 - Tigger1 DNA MER2_type -1738 680 612 668 123 35 9 chr3 58285012 58285126 -159752032 - AluYb8 SINE Alu -13 305 189 * 680 171 0 100 chr3 58285124 58285264 -159751894 + AluJb SINE Alu 89 214 -98 2822 171 38 28 chr3 58285269 58285623 -159751535 - Tigger1 DNA MER2_type -1833 585 221 2160 86 68 0 chr3 58285623 58285902 -159751256 + AluSp SINE Alu 1 298 -15 2822 171 38 28 chr3 58285902 58286126 -159751032 - Tigger1 DNA MER2_type -2197 221 1 1079 179 68 5 chr3 58286342 58286549 -159750609 + AluJo SINE Alu 1 220 -92 957 101 0 0 chr3 58286565 58286684 -159750474 - AluSq/x SINE Alu -194 119 1 482 163 0 12 chr3 58287276 58287362 -159749796 + AluJo SINE Alu 215 299 -13 2055 156 0 3 chr3 58288419 58288726 -159748432 + AluSx SINE Alu 1 306 -6 601 266 14 0 chr3 58289280 58289419 -159747739 + FRAM SINE Alu 6 146 -30 23 0 0 0 chr3 58289427 58289450 -159747708 + AT_rich Low_complexity Low_complexity 1 23 0 2189 136 7 0 chr3 58289450 58289759 -159747399 + AluSx SINE Alu 1 311 -1 2459 103 0 3 chr3 58290129 58290441 -159746717 - AluSx SINE Alu -1 311 1 895 200 11 11 chr3 58290442 58290617 -159746541 + AluJb SINE Alu 120 294 -18 1994 140 0 0 chr3 58290871 58291157 -159746001 + AluSx SINE Alu 1 286 -26 219 299 65 56 chr3 58291250 58291357 -159745801 + MIR SINE MIR 50 157 -105 2418 91 0 3 chr3 58291611 58291920 -159745238 + AluY SINE Alu 1 308 -3 1809 130 70 4 chr3 58292097 58292367 -159744791 - AluSx SINE Alu -19 293 6 30 45 0 0 chr3 58292423 58292467 -159744691 + AT_rich Low_complexity Low_complexity 1 44 0 2034 135 0 10 chr3 58292467 58292763 -159744395 - AluSx SINE Alu -19 293 1 2437 80 0 0 chr3 58293246 58293547 -159743611 - AluY SINE Alu 0 311 11 1977 131 3 42 chr3 58293724 58293893 -159743265 - AluSq SINE Alu -3 300 147 2147 89 58 10 chr3 58293893 58294048 -159743110 - AluSp SINE Alu -8 305 159 1712 106 45 103 chr3 58294048 58294359 -159742799 - AluSg SINE Alu -17 293 1 2147 89 58 10 chr3 58294359 58294494 -159742664 - AluSp SINE Alu -154 159 1 1977 131 3 42 chr3 58294494 58294636 -159742522 - AluSq SINE Alu -156 147 1 2140 86 79 17 chr3 58296311 58296603 -159740555 + AluSg SINE Alu 1 310 0 2424 93 0 0 chr3 58296615 58296916 -159740242 + AluSq SINE Alu 7 307 -6 755 157 15 22 chr3 58296980 58297114 -159740044 + FLAM_C SINE Alu 1 133 0 250 206 32 0 chr3 58297119 58297182 -159739976 - L2 LINE L2 -1 3312 3248 250 258 15 30 chr3 58297215 58297281 -159739877 - MER21A LTR ERV1 -195 736 672 * 644 223 0 14 chr3 58297269 58297408 -159739750 - MER77 LTR ERV1 -9 596 460 425 146 34 11 chr3 58297511 58297600 -159739558 + AluSp/q SINE Alu 218 308 -5 892 176 72 41 chr3 58298109 58298330 -159738828 - MER46A DNA MER2_type -2 234 7 2461 79 0 19 chr3 58298423 58298739 -159738419 + AluY SINE Alu 1 310 -1 2302 87 0 0 chr3 58298741 58299045 -159738113 + AluSg SINE Alu 3 306 0 965 164 44 0 chr3 58299045 58299204 -159737954 + AluJb SINE Alu 132 297 -15 2241 119 3 0 chr3 58299748 58300050 -159737108 + AluSx SINE Alu 1 303 -9 744 219 27 0 chr3 58300127 58300310 -159736848 + MER3 DNA MER1_type 14 201 -8 271 170 38 0 chr3 58300273 58300326 -159736832 - MER3 DNA MER1_type -117 92 38 * 2341 108 7 0 chr3 58300336 58300642 -159736516 - AluSx SINE Alu -4 308 1 908 197 39 0 chr3 58300642 58300820 -159736338 - MER5A DNA MER1_type -4 185 1 789 156 0 44 chr3 58301596 58301731 -159735427 - FLAM_C SINE Alu 0 133 5 2287 108 0 13 chr3 58302080 58302395 -159734763 - AluSx SINE Alu -1 311 1 1526 178 40 7 chr3 58302561 58302836 -159734322 + AluJb SINE Alu 1 284 -28 180 123 18 35 chr3 58302843 58302900 -159734258 + (TA)n Simple_repeat Simple_repeat 2 57 0 1910 116 44 38 chr3 58303544 58303837 -159733321 - AluSx SINE Alu -17 295 1 2108 118 3 34 chr3 58304321 58304642 -159732516 + AluSx SINE Alu 1 311 -1 2235 83 3 51 chr3 58304656 58304968 -159732190 + AluSp SINE Alu 1 297 -16 981 181 29 0 chr3 58304968 58305139 -159732019 + AluJb SINE Alu 134 309 -3 2235 107 3 3 chr3 58306152 58306450 -159730708 - AluSq SINE Alu -15 298 1 2413 61 20 0 chr3 58307329 58307624 -159729534 + AluY SINE Alu 1 301 -10 202 224 138 0 chr3 58307741 58307799 -159729359 - MIR SINE MIR -119 143 78 2198 141 0 0 chr3 58307932 58308244 -159728914 + AluSx SINE Alu 1 312 0 1202 192 77 35 chr3 58308405 58308692 -159728466 + AluJo SINE Alu 1 299 -13 244 229 14 0 chr3 58308724 58308794 -159728364 + A-rich Low_complexity Low_complexity 5 75 0 1796 82 5 0 chr3 58308939 58309159 -159727999 + AluY SINE Alu 1 221 -90 2213 119 6 16 chr3 58309307 58309619 -159727539 + AluSx SINE Alu 1 309 -3 1093 139 0 0 chr3 58309704 58309855 -159727303 + AluSx SINE Alu 60 210 -102 2006 127 41 3 chr3 58309859 58310151 -159727007 + AluSx SINE Alu 1 303 -9 433 189 115 8 chr3 58310744 58310866 -159726292 + L1 LINE L1 4191 4325 -1821 2475 81 0 0 chr3 58310868 58311177 -159725981 + AluY SINE Alu 1 309 -2 2354 88 3 0 chr3 58311353 58311647 -159725511 + AluSp SINE Alu 1 295 -18 1399 165 16 114 chr3 58311655 58311817 -159725341 + AluJo SINE Alu 1 119 -183 1730 176 10 13 chr3 58311817 58312130 -159725028 + AluJb SINE Alu 1 312 0 1399 165 16 114 chr3 58312130 58312283 -159724875 + AluJo SINE Alu 119 285 -17 263 176 20 0 chr3 58312306 58312357 -159724801 - MLT1F1 LTR MaLR -103 464 413 2141 121 0 63 chr3 58312373 58312705 -159724453 + AluSq SINE Alu 1 311 -2 243 139 0 56 chr3 58312726 58312747 -159724411 + (TCTA)n Simple_repeat Simple_repeat 4 25 -46 2046 143 0 7 chr3 58312747 58313047 -159724111 - AluJb SINE Alu -6 306 9 243 139 0 56 chr3 58313047 58313097 -159724061 + (TCTA)n Simple_repeat Simple_repeat 25 71 0 1575 171 31 21 chr3 58313116 58313402 -159723756 - AluJb SINE Alu -23 289 1 422 98 0 61 chr3 58313431 58313513 -159723645 + L1MB8 LINE L1 5270 5346 -800 * 2197 141 49 104 chr3 58313510 58314025 -159723133 + L1MB8 LINE L1 5617 6098 -80 1826 165 0 7 chr3 58314025 58314322 -159722836 - AluJb SINE Alu -17 295 1 2197 141 49 104 chr3 58314322 58314395 -159722763 + L1MB8 LINE L1 6098 6173 -5 1062 277 104 28 chr3 58314454 58314927 -159722231 + MLT1J LTR MaLR 3 511 0 1626 100 141 8 chr3 58314932 58315228 -159721930 + AluSg1 SINE Alu 1 329 0 2262 35 0 4 chr3 58315509 58315767 -159721391 + AluY SINE Alu 39 295 -16 2454 97 0 0 chr3 58315777 58316087 -159721071 + AluSg SINE Alu 1 310 0 646 136 195 0 chr3 58316093 58316211 -159720947 + FLAM_C SINE Alu 2 142 -1 2327 74 0 0 chr3 58318490 58318797 -159718361 - AluY SINE Alu 0 307 1 2255 117 10 0 chr3 58318808 58319115 -159718043 - AluY SINE Alu -1 310 1 355 297 130 42 chr3 58319128 58319320 -159717838 - MIR SINE MIR -46 216 8 189 0 0 0 chr3 58319429 58319450 -159717708 + (TG)n Simple_repeat Simple_repeat 1 21 0 2576 74 0 0 chr3 58319847 58320157 -159717001 - AluY SINE Alu -1 310 1 2233 98 3 33 chr3 58320881 58321188 -159715970 + AluSx SINE Alu 2 299 -13 1359 124 0 73 chr3 58321476 58321677 -159715481 - AluSg/x SINE Alu -12 300 117 210 37 0 0 chr3 58321677 58321704 -159715454 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 1359 124 0 73 chr3 58321704 58321735 -159715423 - AluSg/x SINE Alu -195 117 85 434 127 16 0 chr3 58321735 58321798 -159715360 - AluSq SINE Alu -63 250 187 * 496 94 0 0 chr3 58321793 58321857 -159715301 - AluSq SINE Alu -172 141 78 1328 146 9 9 chr3 58321857 58322069 -159715089 - AluSx SINE Alu -100 212 1 1962 106 44 7 chr3 58322108 58322408 -159714750 - AluSx SINE Alu 0 310 1 1131 181 0 20 chr3 58322858 58323057 -159714101 - AluJo SINE Alu -11 301 107 2388 63 21 0 chr3 58323058 58323343 -159713815 + AluY SINE Alu 1 291 -20 462 228 18 26 chr3 58323347 58323461 -159713697 - AluJb SINE Alu -35 277 165 232 194 0 0 chr3 58323469 58323505 -159713653 + G-rich Low_complexity Low_complexity 1 36 0 2311 82 14 0 chr3 58323750 58324031 -159713127 + AluY SINE Alu 7 291 -20 698 243 7 0 chr3 58324035 58324175 -159712983 - AluJb SINE Alu -35 277 137 2140 135 3 10 chr3 58324196 58324507 -159712651 + AluSx SINE Alu 4 312 0 1636 176 7 0 chr3 58324587 58324860 -159712298 - AluSx SINE Alu -22 290 16 1498 169 0 59 chr3 58324912 58325184 -159711974 - AluJb SINE Alu -56 256 1 369 123 0 0 chr3 58325194 58325251 -159711907 - AluSq SINE Alu -5 296 240 1378 95 0 0 chr3 58325251 58325419 -159711739 - AluSq SINE Alu -145 168 1 297 295 113 0 chr3 58325608 58325742 -159711416 + MIR SINE MIR 85 245 -17 1766 163 44 3 chr3 58325885 58326179 -159710979 - AluJb SINE Alu -5 307 2 2298 106 0 0 chr3 58326302 58326595 -159710563 - AluSq SINE Alu 0 313 21 194 327 18 0 chr3 58327104 58327159 -159709999 + L2 LINE L2 3201 3256 -16 2111 121 3 0 chr3 58327236 58327526 -159709632 + AluSx SINE Alu 1 291 -21 2210 117 0 3 chr3 58327554 58327853 -159709305 + AluSg SINE Alu 1 298 -12 2288 95 0 7 chr3 58327856 58328140 -159709018 + AluSx SINE Alu 1 282 -30 459 0 0 0 chr3 58328140 58328191 -159708967 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 316 39 20 20 chr3 58328213 58328264 -159708894 + (TGGA)n Simple_repeat Simple_repeat 2 52 0 194 393 41 0 chr3 58328428 58328550 -159708608 + MIR SINE MIR 84 210 -52 774 146 0 0 chr3 58329450 58329560 -159707598 - AluJo SINE Alu -118 194 85 748 235 134 8 chr3 58329562 58329830 -159707328 - L1MEc LINE L1 -6046 350 49 777 144 64 0 chr3 58331554 58331679 -159705479 + AluJo SINE Alu 2 134 -178 2424 108 0 0 chr3 58331694 58331999 -159705159 + AluSc SINE Alu 1 305 -4 2092 140 3 0 chr3 58332001 58332301 -159704857 + AluSx SINE Alu 1 301 -11 2290 97 0 0 chr3 58332559 58332867 -159704291 - AluSc SINE Alu -1 308 1 1282 98 0 0 chr3 58332867 58333040 -159704118 - AluSp SINE Alu -14 299 127 393 136 0 0 chr3 58333040 58333106 -159704052 + (TG)n Simple_repeat Simple_repeat 2 67 0 2306 64 3 3 chr3 58333128 58333423 -159703735 - AluY SINE Alu -16 295 1 1028 103 0 0 chr3 58333423 58333559 -159703599 - AluSq/x SINE Alu -177 136 1 2432 64 3 6 chr3 58334006 58334318 -159702840 - AluY SINE Alu 0 311 1 1954 117 0 7 chr3 58334327 58334618 -159702540 - AluSx SINE Alu -23 289 1 248 286 220 0 chr3 58334836 58334927 -159702231 - MIR SINE MIR -76 186 76 2699 26 0 0 chr3 58338768 58339078 -159698080 + AluY SINE Alu 1 310 -1 1733 109 109 0 chr3 58339214 58339479 -159697679 + AluSx SINE Alu 2 295 -17 1943 128 3 0 chr3 58339480 58339770 -159697388 + AluSq SINE Alu 2 292 -21 2341 84 0 3 chr3 58339772 58340083 -159697075 + AluSx SINE Alu 1 310 -2 943 114 0 0 chr3 58340103 58340234 -159696924 + FLAM_C SINE Alu 1 131 -2 2195 98 0 3 chr3 58340644 58340941 -159696217 + AluSg SINE Alu 1 296 -14 624 213 15 29 chr3 58340950 58341086 -159696072 + AluJo SINE Alu 85 218 -94 216 97 0 0 chr3 58341201 58341232 -159695926 + (A)n Simple_repeat Simple_repeat 1 31 0 2260 85 0 0 chr3 58341854 58342147 -159695011 + AluSg SINE Alu 1 293 -17 2070 106 3 0 chr3 58343250 58343568 -159693590 - AluSx SINE Alu 0 319 1 228 232 58 0 chr3 58343870 58343939 -159693219 - L1ME4a LINE L1 -2 6119 6047 2169 187 140 30 chr3 58344047 58344350 -159692808 - L1MD3 LINE L1 -14 7981 7713 2028 121 3 3 chr3 58344350 58344647 -159692511 - AluSx SINE Alu -15 297 1 2169 187 140 30 chr3 58344647 58344914 -159692244 - L1MD3 LINE L1 -282 7713 7348 573 117 87 0 chr3 58345601 58345704 -159691454 + HY1 scRNA scRNA 1 112 0 556 135 48 10 chr3 58345715 58345819 -159691339 + HY1 scRNA scRNA 5 112 0 998 165 0 16 chr3 58345925 58346107 -159691051 - AluJb SINE Alu 0 312 134 2021 122 3 0 chr3 58346114 58346402 -159690756 - AluSx SINE Alu -23 289 1 190 257 0 86 chr3 58347092 58347162 -159689996 + L3b LINE CR1 1457 1520 -63 729 194 0 8 chr3 58347374 58347508 -159689650 + FLAM_A SINE Alu 1 133 0 752 107 0 36 chr3 58347816 58347928 -159689230 + FLAM_C SINE Alu 21 128 -15 251 207 0 117 chr3 58347997 58348108 -159689050 + L1ME4a LINE L1 5957 6054 -67 1227 109 0 0 chr3 58348115 58348289 -159688869 - AluSg/x SINE Alu -2 308 135 951 215 21 0 chr3 58348520 58348711 -159688447 + AluJo SINE Alu 1 195 -117 2011 107 4 0 chr3 58348713 58349027 -159688131 + AluSq SINE Alu 9 323 0 2169 93 10 0 chr3 58349027 58349318 -159687840 + AluSx SINE Alu 1 294 -18 219 139 0 0 chr3 58349330 58349366 -159687792 + (TC)n Simple_repeat Simple_repeat 1 36 0 357 75 0 0 chr3 58349366 58349419 -159687739 + (TG)n Simple_repeat Simple_repeat 2 54 0 1882 118 0 24 chr3 58350287 58350424 -159686734 + AluSg SINE Alu 1 140 -173 2183 103 3 3 chr3 58350424 58350735 -159686423 + AluSq SINE Alu 1 311 -2 1882 118 0 24 chr3 58350735 58350917 -159686241 + AluSg SINE Alu 140 313 0 2229 91 7 0 chr3 58350987 58351284 -159685874 + AluSp SINE Alu 1 299 -14 602 99 0 0 chr3 58351284 58351365 -159685793 + AluJb SINE Alu 61 141 -171 2106 115 7 0 chr3 58351368 58351664 -159685494 + AluSc SINE Alu 1 298 -11 1698 129 0 0 chr3 58351676 58351917 -159685241 + AluSq SINE Alu 1 241 -72 1113 182 147 72 chr3 58351917 58352291 -159684867 + LTR4 LTR ERV1 1 402 -194 * 1403 177 9 78 chr3 58352267 58352589 -159684569 + LTR4 LTR ERV1 297 596 0 291 125 0 42 chr3 58352589 58352667 -159684491 + AluSq SINE Alu 236 311 0 1892 156 3 13 chr3 58352744 58353059 -159684099 + AluSx SINE Alu 1 312 0 23 86 0 0 chr3 58353239 58353297 -159683861 + AT_rich Low_complexity Low_complexity 1 58 0 2086 118 0 0 chr3 58353576 58353880 -159683278 - AluSg1 SINE Alu -5 304 1 1262 183 116 8 chr3 58353880 58354148 -159683010 - AluSg SINE Alu -13 297 1 2157 88 10 7 chr3 58354772 58355068 -159682090 + AluY SINE Alu 1 297 -14 2145 97 3 13 chr3 58355152 58355451 -159681707 + AluSg SINE Alu 1 296 -14 717 183 22 78 chr3 58355641 58355821 -159681337 + MLT1A2 LTR MaLR 1 170 -204 1769 124 16 35 chr3 58355822 58356137 -159681021 + AluSx SINE Alu 3 311 -1 2772 106 8 5 chr3 58356221 58356609 -159680549 - MER9 LTR ERVK -122 389 1 2269 116 6 4 chr3 58356609 58356946 -159680212 - HERVK9 LTR ERVK 0 5916 4922 30922 89 9 1 chr3 58356988 58361041 -159676117 - HERVK9 LTR ERVK -282 5634 1549 4991 86 152 1 chr3 58361043 58361761 -159675397 + LTR12 LTR ERV1 1 826 0 15106 102 15 13 chr3 58361785 58364776 -159672382 + HERV9 LTR ERV1 58 3139 -5260 20357 83 4 11 chr3 58364783 58364819 -159672339 + HERV9 LTR ERV1 4080 4115 -4284 2239 91 3 0 chr3 58364819 58365116 -159672042 - AluSg SINE Alu -12 298 1 20357 83 4 11 chr3 58365116 58366597 -159670561 + HERV9 LTR ERV1 4115 5569 -2830 2300 68 3 0 chr3 58366597 58366889 -159670269 - AluY SINE Alu -18 293 1 20357 83 4 11 chr3 58366889 58368056 -159669102 + HERV9 LTR ERV1 5569 6744 -1655 5265 113 3 0 chr3 58368054 58368789 -159668369 + HERV9 LTR ERV1 7663 8399 0 * 4082 71 123 174 chr3 58368789 58369416 -159667742 + LTR12 LTR ERV1 1 573 -253 2114 108 7 0 chr3 58369416 58369713 -159667445 - AluY SINE Alu -12 299 1 4082 71 123 174 chr3 58369713 58369955 -159667203 + LTR12 LTR ERV1 573 826 0 951 102 0 0 chr3 58369955 58370082 -159667076 - HERVK9 LTR ERVK -4366 1550 1424 * 4006 93 18 21 chr3 58370080 58370650 -159666508 - HERVK9 LTR ERVK -5348 568 1 3410 118 10 8 chr3 58370650 58371160 -159665998 - MER9 LTR ERVK 0 511 1 788 100 0 0 chr3 58371160 58371260 -159665898 - AluSq/x SINE Alu -199 113 14 1018 144 101 29 chr3 58371265 58371449 -159665709 - AluJb SINE Alu -9 303 101 3708 97 41 64 chr3 58371449 58371620 -159665538 + LTR18B LTR ERVL 1 174 -440 2069 122 7 3 chr3 58371620 58371923 -159665235 + AluSg SINE Alu 1 304 -6 3708 97 41 64 chr3 58371923 58372379 -159664779 + LTR18B LTR ERVL 174 614 0 1018 144 101 29 chr3 58372379 58372402 -159664756 - AluJb SINE Alu -211 101 81 1824 113 0 0 chr3 58372403 58372642 -159664516 + MER1A DNA MER1_type 137 375 -154 6866 58 18 0 chr3 58372644 58373790 -159663368 - L1PA6 LINE L1 0 6154 5007 1372 121 0 5 chr3 58373790 58373989 -159663169 - AluSq SINE Alu -115 198 1 1007 143 25 0 chr3 58373989 58374150 -159663008 + MER1A DNA MER1_type 365 529 0 2208 142 132 2 chr3 58374353 58374761 -159662397 + LOR1b LTR ERV1 1 461 0 1919 133 10 3 chr3 58374951 58375251 -159661907 + AluSx SINE Alu 1 302 -10 289 180 48 93 chr3 58375251 58375360 -159661798 + L1 LINE L1 5054 5157 -989 2220 112 0 0 chr3 58375361 58375666 -159661492 + AluSq SINE Alu 2 306 -7 234 0 0 0 chr3 58375666 58375692 -159661466 + (TA)n Simple_repeat Simple_repeat 2 27 0 7938 112 217 25 chr3 58376305 58377728 -159659430 + pTR5 LTR ERV1 743 2438 0 1878 140 0 29 chr3 58377767 58378075 -159659083 - AluSx SINE Alu -13 299 1 2435 63 0 7 chr3 58378116 58378419 -159658739 - AluY SINE Alu -10 301 1 1056 116 79 0 chr3 58378658 58378822 -159658336 - AluSq SINE Alu -12 301 125 364 236 12 36 chr3 58378839 58378992 -159658166 + L1M4 LINE L1 4349 4499 -1647 2277 70 0 3 chr3 58378992 58379293 -159657865 + AluY SINE Alu 1 300 -11 364 236 12 36 chr3 58379293 58379304 -159657854 + L1M4 LINE L1 4499 4509 -1637 2112 107 0 7 chr3 58379304 58379602 -159657556 + AluSc SINE Alu 1 296 -13 2069 102 3 7 chr3 58379602 58379896 -159657262 + AluSx SINE Alu 1 294 -18 809 178 0 0 chr3 58379896 58380031 -159657127 + AluJo/FRAM SINE Alu 134 268 -44 23 0 0 0 chr3 58380070 58380093 -159657065 + AT_rich Low_complexity Low_complexity 1 23 0 527 215 0 0 chr3 58380093 58380186 -159656972 + AluJo SINE Alu 123 215 -97 22 0 0 0 chr3 58580563 58580585 -159456573 + AT_rich Low_complexity Low_complexity 1 22 0 246 261 149 8 chr3 58580652 58580786 -159456372 - MER103 DNA DNA -1 165 13 2031 101 0 4 chr3 58580803 58581079 -159456079 - AluSx SINE Alu -37 275 1 240 35 0 0 chr3 58581094 58581123 -159456035 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 2296 61 0 0 chr3 58581123 58581402 -159455756 - AluY SINE Alu -32 279 1 22 70 0 0 chr3 58581409 58581452 -159455706 + AT_rich Low_complexity Low_complexity 1 43 0 31 44 0 0 chr3 58581535 58581580 -159455578 + AT_rich Low_complexity Low_complexity 1 45 0 228 270 90 0 chr3 58581726 58581826 -159455332 - L1ME3A LINE L1 -230 5940 5832 615 238 130 27 chr3 58581852 58582037 -159455121 - MIR SINE MIR -58 204 1 741 280 111 21 chr3 58582098 58582377 -159454781 - L1ME3A LINE L1 -514 5648 5345 2064 112 3 22 chr3 58582414 58582727 -159454431 - AluSx SINE Alu -5 307 1 1741 138 0 62 chr3 58582758 58583083 -159454075 + AluJo SINE Alu 1 305 -7 1949 108 7 7 chr3 58583105 58583429 -159453729 + AluSq SINE Alu 1 324 0 1953 128 0 10 chr3 58583552 58583863 -159453295 + AluSx SINE Alu 1 308 0 2077 118 3 0 chr3 58584093 58584390 -159452768 + AluSx SINE Alu 1 298 -14 241 250 98 30 chr3 58584413 58584545 -159452613 - HAL1 LINE L1 -954 1553 1413 * 375 236 89 91 chr3 58584519 58584830 -159452328 - L1MEd LINE L1 -4864 1255 944 650 220 0 8 chr3 58584830 58584948 -159452210 - FLAM_A SINE Alu -16 117 1 375 236 89 91 chr3 58584948 58585063 -159452095 - L1MEd LINE L1 -5175 944 830 * 549 172 8 41 chr3 58585048 58585170 -159451988 - L1MB4 LINE L1 -42 6138 6021 5038 210 84 54 chr3 58585198 58585626 -159451532 + L1 LINE L1 2581 2995 -3151 2088 123 3 0 chr3 58585626 58585934 -159451224 - AluSq SINE Alu -4 309 1 5038 210 84 54 chr3 58585934 58586492 -159450666 + L1 LINE L1 2995 3535 -2611 621 218 0 23 chr3 58586492 58586625 -159450533 + FLAM_C SINE Alu 2 131 -2 5038 210 84 54 chr3 58586625 58587085 -159450073 + L1 LINE L1 3535 4091 -2055 836 153 0 0 chr3 58587085 58587209 -159449949 - FLAM_C SINE Alu -9 124 1 5038 210 84 54 chr3 58587209 58587495 -159449663 + L1 LINE L1 4091 4367 -1779 1202 179 13 0 chr3 58587504 58587728 -159449430 - AluJo SINE Alu 0 312 86 39 31 0 16 chr3 58587733 58587761 -159449397 + AT_rich Low_complexity Low_complexity 1 28 -35 756 168 0 8 chr3 58587761 58587880 -159449278 + FLAM_C SINE Alu 1 118 -15 39 31 0 16 chr3 58587880 58587915 -159449243 + AT_rich Low_complexity Low_complexity 28 63 0 1962 109 0 4 chr3 58587929 58588205 -159448953 + AluSq SINE Alu 24 298 -15 344 231 156 27 chr3 58588273 58588459 -159448699 - MER112 DNA MER1_type -48 212 3 920 170 6 0 chr3 58588478 58588637 -159448521 - AluJb SINE Alu -13 299 140 28 48 0 0 chr3 58588769 58588811 -159448347 + AT_rich Low_complexity Low_complexity 1 42 0 2175 103 0 13 chr3 58589157 58589459 -159447699 + AluSx SINE Alu 1 298 -14 1436 136 4 21 chr3 58589773 58590008 -159447150 + AluJo SINE Alu 1 231 -81 2238 84 3 0 chr3 58590098 58590395 -159446763 + AluSx SINE Alu 1 298 -14 1331 208 35 28 chr3 58590485 58590774 -159446384 - AluJo SINE Alu -9 293 3 1714 166 0 3 chr3 58590806 58591095 -159446063 - AluSx SINE Alu -24 288 1 2392 64 0 0 chr3 58591100 58591397 -159445761 - AluY SINE Alu -6 305 9 1735 157 3 14 chr3 58591757 58592050 -159445108 + AluJo SINE Alu 1 290 -22 2221 97 0 3 chr3 58592050 58592349 -159444809 + AluSg SINE Alu 1 298 -12 45311 35 2 2 chr3 58592354 58598507 -159438651 + L1PA4 LINE L1 1 6152 -3 1940 140 13 0 chr3 58598575 58598882 -159438276 + AluSx SINE Alu 1 311 -1 2175 116 0 0 chr3 58598898 58599201 -159437957 + AluSx SINE Alu 1 303 -9 23 24 0 24 chr3 58599230 58599253 -159437905 + AT_rich Low_complexity Low_complexity 1 24 -16 535 189 61 61 chr3 58599253 58599385 -159437773 + FLAM_C SINE Alu 1 132 -1 23 24 0 24 chr3 58599385 58599402 -159437756 + AT_rich Low_complexity Low_complexity 24 40 0 1562 171 14 0 chr3 58599944 58600256 -159436902 + AluJb SINE Alu 10 312 0 1807 165 0 0 chr3 58600298 58600589 -159436569 - AluJb SINE Alu -21 291 1 36 40 0 0 chr3 58600675 58600725 -159436433 + AT_rich Low_complexity Low_complexity 1 50 0 399 326 133 57 chr3 58600728 58600847 -159436311 - L2 LINE L2 -5 3267 3158 1459 174 60 4 chr3 58600847 58601128 -159436030 + AluJb SINE Alu 1 297 -15 399 326 133 57 chr3 58601128 58601884 -159435274 - L2 LINE L2 -114 3158 2211 2217 96 0 3 chr3 58601896 58602198 -159434960 + AluSq SINE Alu 1 301 -12 1893 114 59 0 chr3 58602276 58602565 -159434593 + L1PA11 LINE L1 5858 6163 -11 2111 107 0 3 chr3 58602790 58603081 -159434077 + AluSg SINE Alu 2 291 -19 1319 195 56 11 chr3 58603090 58603377 -159433781 + AluJb SINE Alu 1 300 -2 293 314 249 14 chr3 58603458 58603808 -159433350 - L2 LINE L2 -339 2975 2544 1769 108 8 0 chr3 58603951 58604209 -159432949 + AluSx SINE Alu 44 303 -9 2340 67 3 0 chr3 58604220 58604518 -159432640 + AluY SINE Alu 2 300 -11 24 0 0 0 chr3 58605965 58605989 -159431169 + AT_rich Low_complexity Low_complexity 1 24 0 1559 138 23 79 chr3 58605989 58606293 -159430865 - AluJb SINE Alu -21 291 5 258 293 41 49 chr3 58606581 58606704 -159430454 + MIR SINE MIR 107 228 -34 469 261 124 7 chr3 58607201 58607354 -159429804 + MIR3 SINE MIR 37 207 -1 1890 155 0 16 chr3 58607438 58607755 -159429403 + AluJo SINE Alu 1 312 0 1254 137 28 68 chr3 58607775 58608024 -159429134 + AluSg/x SINE Alu 70 308 -2 324 0 0 0 chr3 58608402 58608438 -159428720 + (T)n Simple_repeat Simple_repeat 1 36 0 23 0 0 0 chr3 58609952 58609975 -159427183 + AT_rich Low_complexity Low_complexity 1 23 0 688 168 67 8 chr3 58609979 58610098 -159427060 - FLAM_C SINE Alu -16 127 2 1181 175 57 91 chr3 58610101 58610165 -159426993 - AluJo SINE Alu -12 290 225 2195 105 0 0 chr3 58610165 58610469 -159426689 - AluSg SINE Alu 0 310 7 1839 68 0 0 chr3 58610475 58610710 -159426448 - AluY SINE Alu 0 311 77 1181 175 57 91 chr3 58610710 58610935 -159426223 - AluJo SINE Alu -82 220 4 2331 65 3 0 chr3 58610950 58611244 -159425914 - AluSg SINE Alu -12 298 4 1772 160 7 0 chr3 58611248 58611541 -159425617 - AluSx SINE Alu -16 296 2 346 273 98 7 chr3 58611548 58611691 -159425467 - L1MC4 LINE L1 -89 7953 7798 369 266 85 11 chr3 58611756 58611850 -159425308 - MIR SINE MIR -112 150 50 305 242 225 66 chr3 58611838 58612020 -159425138 + MIR SINE MIR 50 260 -2 * 1898 84 11 11 chr3 58612137 58612410 -159424748 - AluSq SINE Alu -40 273 1 1044 91 0 0 chr3 58612413 58612545 -159424613 - AluSp SINE Alu -181 132 1 830 161 0 7 chr3 58612545 58612688 -159424470 - AluJb SINE Alu -14 298 157 539 156 0 0 chr3 58612688 58612778 -159424380 + AluY SINE Alu 219 308 -3 834 161 0 15 chr3 58612805 58612942 -159424216 - AluJb SINE Alu -175 137 3 812 147 16 16 chr3 58613055 58613184 -159423974 - AluJb SINE Alu -178 134 6 2104 96 6 16 chr3 58613196 58613510 -159423648 - AluSq SINE Alu 0 313 3 805 174 0 0 chr3 58613673 58613805 -159423353 - FLAM_C SINE Alu -11 132 1 24 0 0 0 chr3 58613963 58613987 -159423171 + AT_rich Low_complexity Low_complexity 1 24 0 1968 113 0 3 chr3 58613987 58614343 -159422815 + AluSx SINE Alu 1 355 0 2338 68 0 3 chr3 58614354 58614649 -159422509 + AluY SINE Alu 1 294 -17 196 202 181 64 chr3 58615066 58615160 -159421998 - MIR SINE MIR -63 199 95 212 143 0 0 chr3 58615488 58615523 -159421635 + (CCCCCG)n Simple_repeat Simple_repeat 6 40 0 1851 126 37 0 chr3 58617461 58617755 -159419403 + AluSx SINE Alu 1 305 -7 200 193 140 53 chr3 58617777 58617834 -159419324 - L2 LINE L2 0 3313 3252 241 268 39 94 chr3 58618805 58618932 -159418226 + MIR SINE MIR 73 192 -70 2277 54 0 58 chr3 58619142 58619455 -159417703 - AluY SINE Alu -16 295 1 2341 76 3 0 chr3 58620019 58620320 -159416838 + AluSp SINE Alu 1 302 -11 222 321 64 57 chr3 58620504 58620644 -159416514 + L2 LINE L2 2944 3084 -188 32 0 0 0 chr3 58620700 58620732 -159416426 + AT_rich Low_complexity Low_complexity 1 32 0 338 289 116 8 chr3 58620771 58620892 -159416266 + L2 LINE L2 3139 3272 0 1806 131 21 11 chr3 58621311 58621593 -159415565 - AluSx SINE Alu -27 285 1 2120 114 0 0 chr3 58621876 58622182 -159414976 - AluSg SINE Alu -4 306 1 1060 173 0 36 chr3 58622254 58622479 -159414679 - AluJo SINE Alu -1 311 95 367 200 29 0 chr3 58622709 58622779 -159414379 + MIR SINE MIR 80 151 -111 1735 162 17 3 chr3 58622838 58623128 -159414030 + AluJo SINE Alu 1 294 -18 2040 115 0 3 chr3 58623451 58623739 -159413419 - AluSx SINE Alu -23 289 3 230 275 12 12 chr3 58624717 58624797 -159412361 - L2 LINE L2 -274 2998 2919 1662 173 17 0 chr3 58624998 58625287 -159411871 + AluJb SINE Alu 1 294 -18 2046 109 3 7 chr3 58625310 58625468 -159411690 - AluSq SINE Alu -20 293 135 2269 80 0 10 chr3 58625468 58625779 -159411379 - AluY SINE Alu -3 308 1 2046 109 3 7 chr3 58625779 58625914 -159411244 - AluSq SINE Alu -178 135 1 1922 151 0 0 chr3 58626228 58626532 -159410626 + AluSx SINE Alu 1 304 -8 1351 181 0 23 chr3 58626768 58627028 -159410130 + AluJo SINE Alu 1 254 -58 2278 78 0 0 chr3 58627028 58627323 -159409835 + AluY SINE Alu 1 295 -16 438 238 287 11 chr3 58627326 58627507 -159409651 + MIR SINE MIR 28 258 -4 1622 127 14 11 chr3 58627591 58627866 -159409292 + AluSx SINE Alu 33 308 -4 207 0 0 0 chr3 58628021 58628044 -159409114 + (A)n Simple_repeat Simple_repeat 1 23 0 2193 70 14 3 chr3 58628044 58628330 -159408828 + AluY SINE Alu 1 289 -22 1406 101 18 18 chr3 58628330 58628548 -159408610 + AluSg/x SINE Alu 83 300 -12 919 161 39 50 chr3 58628873 58629053 -159408105 + AluJo SINE Alu 83 260 -52 206 321 49 25 chr3 58629061 58629142 -159408016 + MIR SINE MIR 19 101 -107 181 217 67 33 chr3 58629221 58629281 -159407877 + L2 LINE L2 3251 3312 -1 1874 144 13 3 chr3 58629454 58629753 -159407405 - AluJb SINE Alu -10 302 1 760 191 0 22 chr3 58630101 58630237 -159406921 - FLAM_C SINE Alu 0 133 1 22 0 0 0 chr3 58630571 58630593 -159406565 + AT_rich Low_complexity Low_complexity 1 22 0 1641 170 0 7 chr3 58630667 58630950 -159406208 + AluJb SINE Alu 1 281 -31 2058 93 0 28 chr3 58630955 58631246 -159405912 + AluY SINE Alu 1 283 -28 1055 93 0 0 chr3 58631107 58631246 -159405912 + AluY SINE Alu 145 308 0 226 0 0 0 chr3 58631246 58631271 -159405887 + (TAAAA)n Simple_repeat Simple_repeat 2 180 0 504 182 0 13 chr3 58631356 58631574 -159405584 + AluJb SINE Alu 11 304 -8 238 366 60 8 chr3 58631617 58631751 -159405407 - L2 LINE L2 -216 3056 2916 2239 82 0 13 chr3 58631763 58632068 -159405090 + AluSg SINE Alu 1 301 -9 222 282 49 70 chr3 58632293 58632435 -159404723 + L2 LINE L2 3171 3309 -4 239 366 41 36 chr3 58632622 58632843 -159404315 - L2 LINE L2 -497 2817 2596 1878 116 28 11 chr3 58632858 58633143 -159404015 + AluSx SINE Alu 1 290 -22 1993 115 3 13 chr3 58633158 58633462 -159403696 + AluSx SINE Alu 2 302 -10 201 323 0 0 chr3 58633552 58633614 -159403544 - L2 LINE L2 -945 2369 2308 1600 159 25 0 chr3 58633618 58633895 -159403263 + AluJo SINE Alu 7 290 -22 2317 82 0 0 chr3 58633931 58634234 -159402924 + AluSx SINE Alu 1 303 -9 49 15 0 15 chr3 58634266 58634304 -159402854 + AT_rich Low_complexity Low_complexity 1 38 -28 2212 97 0 7 chr3 58634304 58634602 -159402556 + AluSq SINE Alu 2 297 -16 2083 94 3 13 chr3 58634602 58634900 -159402258 + AluSq SINE Alu 1 295 -18 49 15 0 15 chr3 58634603 58634928 -159402230 + AT_rich Low_complexity Low_complexity 38 66 0 339 25 0 0 chr3 58635058 58635098 -159402060 + (TG)n Simple_repeat Simple_repeat 1 40 0 203 330 0 18 chr3 58635291 58635400 -159401758 + A-rich Low_complexity Low_complexity 4 110 0 1015 114 0 0 chr3 58635765 58635938 -159401220 + AluSg/x SINE Alu 147 319 0 2076 89 0 40 chr3 58636742 58637068 -159400090 - AluSq SINE Alu 0 313 1 2369 132 57 40 chr3 58637408 58637600 -159399558 + MSTA LTR MaLR 1 188 -240 2041 121 14 0 chr3 58637600 58637889 -159399269 + AluSx SINE Alu 1 293 -19 2369 132 57 40 chr3 58637889 58638118 -159399040 + MSTA LTR MaLR 188 426 -2 730 218 0 0 chr3 58638259 58638392 -159398766 + FLAM_A SINE Alu 1 133 0 321 26 0 0 chr3 58638621 58638659 -159398499 + (CA)n Simple_repeat Simple_repeat 2 39 0 810 95 0 0 chr3 58639158 58639274 -159397884 - AluSg/x SINE Alu -7 302 187 257 188 10 178 chr3 58639577 58639620 -159397538 - L2 LINE L2 -7 3265 3246 2243 67 3 0 chr3 58639620 58639933 -159397225 + AluY SINE Alu 1 314 0 257 188 10 178 chr3 58639933 58639989 -159397169 - L2 LINE L2 -26 3246 3182 * 287 271 0 35 chr3 58639977 58640135 -159397023 - MIR SINE MIR -31 231 15 554 278 121 35 chr3 58640228 58640566 -159396592 - L2 LINE L2 -1 3312 2946 2677 71 28 97 chr3 58640622 58641046 -159396112 + MER48 LTR ERV1 1 395 -3 10401 103 9 26 chr3 58641077 58642086 -159395072 + HERVH48 LTR ERV1 4333 5309 -1345 2241 91 0 10 chr3 58642086 58642395 -159394763 - AluSc SINE Alu -3 306 1 10401 103 9 26 chr3 58642395 58642902 -159394256 + HERVH48 LTR ERV1 5309 5823 -831 2121 112 0 3 chr3 58643073 58643376 -159393782 - AluSg SINE Alu -8 302 1 1959 128 7 3 chr3 58645000 58645306 -159391852 - AluSc SINE Alu -1 308 2 1556 175 23 13 chr3 58645309 58645612 -159391546 - AluJb SINE Alu -6 306 1 2208 110 0 0 chr3 58645751 58646050 -159391108 - AluSg SINE Alu -11 299 1 2179 112 0 13 chr3 58646076 58646388 -159390770 - AluSc SINE Alu -1 308 1 1619 180 50 25 chr3 58646389 58646751 -159390407 - L1MD3 LINE L1 -5 7990 7620 248 143 71 0 chr3 58646769 58646825 -159390333 + CT-rich Low_complexity Low_complexity 1 60 0 854 149 0 22 chr3 58646825 58646959 -159390199 - FLAM_C SINE Alu -2 131 1 2029 113 0 0 chr3 58646967 58647283 -159389875 - AluSx SINE Alu 0 316 1 1109 199 17 0 chr3 58647283 58647514 -159389644 + L1 LINE L1 3550 3784 -2362 2225 88 3 13 chr3 58647515 58647648 -159389510 + AluSg SINE Alu 1 134 -176 1978 98 31 3 chr3 58647648 58647934 -159389224 + AluSx SINE Alu 1 294 -18 2225 88 3 13 chr3 58647934 58648107 -159389051 + AluSg SINE Alu 134 304 -6 1666 156 24 0 chr3 58648116 58648405 -159388753 + AluSx SINE Alu 1 296 -16 1966 109 4 0 chr3 58648639 58648905 -159388253 + AluSp SINE Alu 7 273 -40 252 270 11 79 chr3 58649214 58649303 -159387855 + L2 LINE L2 3231 3313 0 228 135 0 0 chr3 58649623 58649660 -159387498 + (T)n Simple_repeat Simple_repeat 1 37 0 1723 157 7 7 chr3 58649705 58650011 -159387147 - AluJb SINE Alu -6 306 1 1871 141 3 16 chr3 58650251 58650564 -159386594 - AluSx SINE Alu 0 312 4 295 328 70 62 chr3 58651687 58651815 -159385343 - L2 LINE L2 -16 3256 3128 1428 119 0 0 chr3 58651821 58652031 -159385127 - AluSq SINE Alu -13 300 91 508 105 53 0 chr3 58653022 58653098 -159384060 + MADE1 DNA Mariner 1 80 0 1872 124 76 0 chr3 58653248 58653539 -159383619 - Tigger2 DNA MER2_type -2052 666 354 287 25 25 0 chr3 58653539 58653579 -159383579 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 1243 207 26 15 chr3 58653590 58653860 -159383298 - AluJo SINE Alu -39 273 1 506 179 0 0 chr3 58653860 58653944 -159383214 - Tigger2 DNA MER2_type -2358 360 277 1683 110 0 0 chr3 58653955 58654191 -159382967 - AluSg/x SINE Alu -3 309 74 2232 105 3 0 chr3 58654192 58654496 -159382662 - AluSq SINE Alu -8 305 1 1134 162 29 123 chr3 58654497 58654638 -159382520 - L1M4 LINE L1 -507 5667 5514 2302 85 0 0 chr3 58654638 58654945 -159382213 - AluY SINE Alu -2 309 3 1134 162 29 123 chr3 58654945 58655129 -159382029 - L1M4 LINE L1 -660 5514 5373 1649 154 45 7 chr3 58655129 58655415 -159381743 - AluSq SINE Alu -16 297 1 1134 162 29 123 chr3 58655415 58655428 -159381730 - L1M4 LINE L1 -801 5373 5360 * 2935 199 21 95 chr3 58655416 58655488 -159381670 - L1M4 LINE L1 -1161 4985 4909 1957 96 7 14 chr3 58655488 58655779 -159381379 - AluSc SINE Alu -15 294 6 2935 199 21 95 chr3 58655779 58655794 -159381364 - L1M4 LINE L1 -1237 4909 4894 1979 104 17 3 chr3 58655794 58656091 -159381067 - AluSx SINE Alu -9 303 3 2935 199 21 95 chr3 58656091 58656296 -159380862 - L1M4 LINE L1 -1252 4894 4676 2054 122 0 0 chr3 58656296 58656592 -159380566 - AluSc SINE Alu -13 296 1 2935 199 21 95 chr3 58656592 58656708 -159380450 - L1M4 LINE L1 -1470 4676 4553 1947 134 0 10 chr3 58656708 58657015 -159380143 - AluSx SINE Alu -6 306 3 2935 199 21 95 chr3 58657015 58657214 -159379944 - L1M4 LINE L1 -1593 4553 4341 1471 169 0 51 chr3 58657214 58657527 -159379631 - AluJb SINE Alu -15 297 1 2935 199 21 95 chr3 58657527 58657799 -159379359 - L1M4 LINE L1 -1805 4341 4051 234 0 0 0 chr3 58657799 58657825 -159379333 + (TCTA)n Simple_repeat Simple_repeat 4 29 0 225 94 0 0 chr3 58657827 58657859 -159379299 + (CA)n Simple_repeat Simple_repeat 2 33 0 1960 129 3 0 chr3 58657859 58658153 -159379005 - AluSg SINE Alu -15 295 1 2935 199 21 95 chr3 58658153 58658204 -159378954 - L1M4 LINE L1 -1978 4168 4115 1835 152 3 7 chr3 58658206 58658508 -159378650 - AluSx SINE Alu -11 301 1 436 261 111 26 chr3 58658733 58658886 -159378272 + MIR SINE MIR 78 243 -19 341 253 101 0 chr3 58659120 58659219 -159377939 - MIR SINE MIR -3 259 151 859 132 0 8 chr3 58659302 58659431 -159377727 + AluJo/FLAM SINE Alu 5 132 -170 325 91 0 0 chr3 58659431 58659475 -159377683 - Alu SINE Alu -9 293 250 196 175 0 25 chr3 58659981 58660021 -159377137 - L2 LINE L2 -4 3309 3271 1644 152 0 98 chr3 58660343 58660678 -159376480 - AluJb SINE Alu 0 302 1 26 0 0 0 chr3 58660682 58660708 -159376450 + AT_rich Low_complexity Low_complexity 1 26 0 670 214 76 0 chr3 58660901 58661046 -159376112 - AluJo/FRAM SINE Alu -7 295 140 1260 157 42 5 chr3 58661046 58661263 -159375895 - AluJo SINE Alu -9 303 79 1624 179 3 17 chr3 58661428 58661730 -159375428 + AluJb SINE Alu 2 299 -13 226 289 168 27 chr3 58663170 58663319 -159373839 - MIR SINE MIR -59 203 34 1097 164 63 0 chr3 58663699 58663906 -159373252 + AluJb SINE Alu 86 305 -7 2142 113 0 7 chr3 58663952 58664254 -159372904 + AluSx SINE Alu 1 300 -12 392 76 0 20 chr3 58664368 58664385 -159372773 + Alu SINE Alu 1 17 -282 1661 140 0 84 chr3 58664385 58664706 -159372452 + AluJb SINE Alu 1 294 -18 392 76 0 20 chr3 58664706 58664753 -159372405 + Alu SINE Alu 17 47 -252 2097 104 13 7 chr3 58667610 58667918 -159369240 - AluSq SINE Alu -3 310 1 2206 103 3 0 chr3 58668038 58668339 -159368819 + AluSp SINE Alu 1 302 -11 2153 106 0 17 chr3 58668426 58668728 -159368430 + AluSx SINE Alu 1 297 -15 4268 168 40 39 chr3 58668843 58668989 -159368169 + L1MB3 LINE L1 5140 5284 -899 1326 190 19 50 chr3 58668989 58669310 -159367848 + AluJo SINE Alu 1 311 -1 4268 168 40 39 chr3 58669310 58670162 -159366996 + L1MB3 LINE L1 5284 6142 -41 2072 124 0 3 chr3 58670162 58670469 -159366689 + AluSg SINE Alu 1 306 -4 1970 135 7 0 chr3 58670484 58670788 -159366370 + AluSx SINE Alu 5 310 -2 2156 96 3 0 chr3 58670852 58671144 -159366014 + AluSp SINE Alu 1 293 -20 321 151 82 55 chr3 58671151 58671224 -159365934 + L1M4 LINE L1 5127 5201 -945 1131 191 69 13 chr3 58671244 58671319 -159365839 + AluJo SINE Alu 46 115 -197 2398 74 3 0 chr3 58671319 58671628 -159365530 + AluY SINE Alu 1 310 -1 1131 191 69 13 chr3 58671628 58671783 -159365375 + AluJo SINE Alu 115 289 -23 27 0 0 0 chr3 58671783 58671810 -159365348 + AT_rich Low_complexity Low_complexity 1 27 0 753 146 30 85 chr3 58671821 58671879 -159365279 + L1MB5 LINE L1 6019 6079 -95 2065 97 17 0 chr3 58671879 58672169 -159364989 + AluSx SINE Alu 6 300 -12 1906 129 0 26 chr3 58672169 58672470 -159364688 + AluSg SINE Alu 1 294 -16 753 146 30 85 chr3 58672470 58672575 -159364583 + L1MB5 LINE L1 6077 6174 0 294 295 51 0 chr3 58672577 58672655 -159364503 - MIR SINE MIR -133 129 48 369 208 0 20 chr3 58672757 58672858 -159364300 + CT-rich Low_complexity Low_complexity 1 99 0 2069 122 0 3 chr3 58673535 58673839 -159363319 + AluSq SINE Alu 1 303 -10 844 129 0 0 chr3 58673840 58673964 -159363194 + Tigger2 DNA MER2_type 2536 2659 -59 1796 163 10 0 chr3 58673964 58674259 -159362899 + AluJb SINE Alu 1 298 -14 2172 88 6 25 chr3 58674296 58674613 -159362545 + AluSp SINE Alu 2 312 -1 1009 160 61 56 chr3 58674935 58675148 -159362010 + AluJo SINE Alu 92 305 -7 240 321 66 9 chr3 58675268 58675374 -159361784 + MIR3 SINE MIR 78 189 -19 388 215 115 69 chr3 58675455 58675494 -159361664 - MIR SINE MIR -79 183 147 2154 102 3 3 chr3 58675494 58675789 -159361369 - AluSx SINE Alu -17 295 1 388 215 115 69 chr3 58675789 58675879 -159361279 - MIR SINE MIR -115 147 48 1359 115 0 0 chr3 58676104 58676296 -159360862 - AluSq SINE Alu -10 303 112 1279 86 0 0 chr3 58676302 58676464 -159360694 - AluSq SINE Alu -151 162 1 644 235 54 6 chr3 58676503 58676669 -159360489 - MER5B DNA MER1_type 0 178 5 1994 106 10 10 chr3 58677526 58677818 -159359340 - AluSg SINE Alu -18 292 1 318 95 0 0 chr3 58678005 58678047 -159359111 + Alu SINE Alu 1 42 -261 1519 167 213 14 chr3 58678478 58678621 -159358537 - Charlie1b DNA MER1_type -2243 518 405 1976 139 0 0 chr3 58678621 58678915 -159358243 + AluSx SINE Alu 1 294 -18 1519 167 213 14 chr3 58678915 58679203 -159357955 - Charlie1b DNA MER1_type -2356 405 1 1881 148 0 3 chr3 58679267 58679571 -159357587 + AluJb SINE Alu 1 303 -9 21 0 0 0 chr3 58680541 58680562 -159356596 + AT_rich Low_complexity Low_complexity 1 21 0 342 284 241 22 chr3 58680572 58680892 -159356266 - L1ME2 LINE L1 -265 5899 5510 1903 105 0 11 chr3 58680892 58681159 -159355999 - AluSg SINE Alu -7 303 40 234 158 18 35 chr3 58681199 58681256 -159355902 - L1ME2 LINE L1 -718 5524 5469 * 451 266 85 82 chr3 58681249 58681469 -159355689 - L1ME4a LINE L1 -222 5899 5681 1983 137 0 6 chr3 58681469 58681782 -159355376 - AluSx SINE Alu -1 311 1 1819 135 9 35 chr3 58681788 58682106 -159355052 - AluSx SINE Alu -2 310 1 451 266 85 82 chr3 58682106 58682209 -159354949 - L1ME4a LINE L1 -444 5677 5568 1973 154 3 22 chr3 58682218 58682536 -159354622 - AluJb SINE Alu 0 312 1 180 135 0 0 chr3 58682797 58682834 -159354324 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 2297 114 0 0 chr3 58683758 58684065 -159353093 + AluSx SINE Alu 1 307 -5 2161 129 7 0 chr3 58685941 58686236 -159350922 - AluSx SINE Alu -15 297 1 434 169 11 0 chr3 58687478 58687567 -159349591 + CT-rich Low_complexity Low_complexity 1 90 0 2432 94 0 0 chr3 58687567 58687876 -159349282 - AluY SINE Alu -2 309 1 1790 205 0 3 chr3 58687876 58688179 -159348979 - AluJb SINE Alu -10 302 1 631 257 139 19 chr3 58688782 58689189 -159347969 - L2 LINE L2 -86 3227 2717 462 184 11 0 chr3 58689321 58689408 -159347750 + AluY SINE Alu 215 302 -9 1560 192 42 7 chr3 58689729 58690015 -159347143 + AluJo SINE Alu 5 300 -12 2290 100 0 10 chr3 58690021 58690320 -159346838 + AluSx SINE Alu 3 298 -14 1025 159 16 6 chr3 58691811 58691993 -159345165 + AluSx SINE Alu 1 184 -128 422 174 0 65 chr3 58692111 58692203 -159344955 - AluS SINE Alu -226 87 2 2055 179 90 98 chr3 58692203 58692312 -159344846 + L1 LINE L1 4211 4319 -1827 2219 111 3 3 chr3 58692312 58692610 -159344548 + AluSq SINE Alu 1 298 -15 2055 179 90 98 chr3 58692610 58692633 -159344525 + L1 LINE L1 4319 4341 -1805 546 206 29 52 chr3 58692633 58692769 -159344389 + FLAM_A SINE Alu 1 133 0 2055 179 90 98 chr3 58692769 58692838 -159344320 + L1 LINE L1 4341 4409 -1737 2192 138 0 0 chr3 58692838 58693142 -159344016 + AluSx SINE Alu 1 304 -8 2055 179 90 98 chr3 58693142 58693201 -159343957 + L1 LINE L1 4409 4467 -1679 1229 172 100 83 chr3 58693201 58693462 -159343696 + AluJo SINE Alu 1 269 -33 2426 83 10 0 chr3 58693462 58693764 -159343394 + AluSg SINE Alu 1 305 -5 1229 172 100 83 chr3 58693764 58693792 -159343366 + AluJo SINE Alu 269 295 -7 2055 179 90 98 chr3 58693792 58694272 -159342886 + L1 LINE L1 4467 4948 -1198 2170 104 0 51 chr3 58694642 58694958 -159342200 - AluSx SINE Alu -12 300 1 1694 156 3 19 chr3 58695144 58695451 -159341707 + AluSx SINE Alu 1 302 -10 1300 95 18 0 chr3 58695451 58695620 -159341538 + AluSg/x SINE Alu 134 305 -7 420 286 72 18 chr3 58695770 58695937 -159341221 + MIR SINE MIR 19 193 -52 231 119 0 48 chr3 58695941 58695983 -159341175 + Alu SINE Alu 125 164 -139 1817 111 0 4 chr3 58696360 58696603 -159340555 - AluSg SINE Alu -68 242 1 1764 134 41 61 chr3 58696607 58696858 -159340300 - L1MB5 LINE L1 -241 5933 5691 2190 128 3 0 chr3 58696858 58697155 -159340003 - AluSp SINE Alu -15 298 1 1764 134 41 61 chr3 58697155 58697297 -159339861 - L1MB5 LINE L1 -483 5691 5548 2220 132 0 3 chr3 58697297 58697608 -159339550 - AluSx SINE Alu -2 310 1 779 190 0 130 chr3 58698197 58698413 -159338745 + AluJb SINE Alu 113 300 -12 1882 155 0 10 chr3 58698594 58698884 -159338274 - AluJb SINE Alu -8 304 18 2239 116 3 6 chr3 58698901 58699212 -159337946 - AluSq SINE Alu -3 310 1 2377 89 3 0 chr3 58699214 58699507 -159337651 - AluSx SINE Alu -18 294 1 468 280 77 14 chr3 58699511 58699654 -159337504 - MIR SINE MIR -56 206 55 901 139 0 0 chr3 58699838 58699975 -159337183 + AluSp/q SINE Alu 174 310 -3 1048 148 45 5 chr3 58699976 58700199 -159336959 + Tigger2 DNA MER2_type 32 263 -2455 2498 58 20 0 chr3 58700202 58700495 -159336663 + AluY SINE Alu 1 299 -12 650 168 0 0 chr3 58700507 58700608 -159336550 + AluSg/x SINE Alu 132 232 -78 32 43 0 0 chr3 58700622 58700668 -159336490 + AT_rich Low_complexity Low_complexity 1 46 0 2333 102 0 0 chr3 58700680 58700974 -159336184 + AluSx SINE Alu 1 294 -18 2229 122 3 6 chr3 58700976 58701287 -159335871 + AluSx SINE Alu 1 310 -2 2129 103 52 0 chr3 58701593 58701883 -159335275 - AluSp SINE Alu -7 306 2 2472 84 3 0 chr3 58702640 58702948 -159334210 + AluSp SINE Alu 1 309 -4 2219 126 0 0 chr3 58703698 58703999 -159333159 + AluSx SINE Alu 1 301 -11 22 56 0 0 chr3 58704480 58704516 -159332642 + AT_rich Low_complexity Low_complexity 1 36 0 2572 33 10 0 chr3 58704516 58704818 -159332340 - L1PA5 LINE L1 -8 6146 5842 2374 97 0 0 chr3 58704818 58705118 -159332040 - AluSg SINE Alu -10 300 1 213 260 110 0 chr3 58705737 58705810 -159331348 + MIR SINE MIR 176 256 -6 427 315 67 55 chr3 58705834 58705946 -159331212 + MIR SINE MIR 6 115 -147 1969 163 0 10 chr3 58705946 58706253 -159330905 - AluSx SINE Alu -8 304 1 427 315 67 55 chr3 58706253 58706394 -159330764 + MIR SINE MIR 115 262 0 2211 114 0 10 chr3 58706398 58706706 -159330452 - AluSq SINE Alu -4 309 5 2420 104 0 9 chr3 58707346 58707662 -159329496 - AluSq SINE Alu 0 313 1 181 256 33 78 chr3 58709502 58709592 -159327566 - L2 LINE L2 -151 3121 3036 243 143 0 41 chr3 58710274 58710323 -159326835 - L1MB7 LINE L1 -10 6174 6128 2320 91 13 13 chr3 58710548 58710856 -159326302 - AluSx SINE Alu -4 308 1 300 40 0 40 chr3 58711382 58711432 -159325726 - AluSx SINE Alu 0 300 253 1697 97 9 0 chr3 58711432 58711649 -159325509 - AluSx SINE Alu -93 219 1 2539 79 0 0 chr3 58712195 58712499 -159324659 - AluY SINE Alu -7 304 1 1071 182 0 21 chr3 58712501 58712688 -159324470 - AluJo SINE Alu -8 304 122 202 224 0 0 chr3 58715163 58715212 -159321946 + GA-rich Low_complexity Low_complexity 2 50 0 * 207 191 0 0 chr3 58715180 58715222 -159321936 + (ATG)n Simple_repeat Simple_repeat 2 43 0 1029 172 91 24 chr3 58715639 58715688 -159321470 - MER58A DNA MER1_type -2197 223 179 2547 68 7 3 chr3 58715688 58715997 -159321161 + AluSx SINE Alu 1 310 -2 1029 172 91 24 chr3 58715997 58716156 -159321002 - MER58A DNA MER1_type -2241 179 1 2519 70 3 0 chr3 58717410 58717712 -159319446 - AluY SINE Alu -8 303 1 201 255 0 0 chr3 58717895 58717942 -159319216 + GA-rich Low_complexity Low_complexity 1 47 0 29 28 0 0 chr3 58720350 58720386 -159316772 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr3 58720675 58720703 -159316455 + AT_rich Low_complexity Low_complexity 1 28 0 224 264 35 0 chr3 58726278 58726365 -159310793 + (CGG)n Simple_repeat Simple_repeat 1 90 0 23 0 0 0 chr3 58727049 58727072 -159310086 + GC_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 58727170 58727192 -159309966 + GC_rich Low_complexity Low_complexity 1 22 0 265 222 28 37 chr3 58727203 58727311 -159309847 + (CGG)n Simple_repeat Simple_repeat 1 107 0 315 283 123 4 chr3 58730286 58730533 -159306625 + L2 LINE L2 2682 3059 -254 1456 194 21 31 chr3 58730932 58731088 -159306070 - AluJb SINE Alu -26 286 133 2296 99 0 23 chr3 58731088 58731392 -159305766 - AluSx SINE Alu -15 297 1 1456 194 21 31 chr3 58731392 58731524 -159305634 - AluJb SINE Alu -179 133 1 280 284 58 26 chr3 58731707 58731862 -159305296 + L2 LINE L2 2820 2979 -293 236 125 0 0 chr3 58731989 58732021 -159305137 + MIR SINE MIR 217 248 -14 240 35 0 0 chr3 58733009 58733038 -159304120 + (CCCCCG)n Simple_repeat Simple_repeat 4 32 0 345 24 0 0 chr3 58733212 58733254 -159303904 + (TCC)n Simple_repeat Simple_repeat 1 42 0 22 0 0 0 chr3 58733335 58733357 -159303801 + GC_rich Low_complexity Low_complexity 1 22 0 181 414 9 0 chr3 58745878 58745989 -159291169 - L2 LINE L2 -11 3261 3150 829 254 146 20 chr3 58747413 58747857 -159289301 + MLT1H1 LTR MaLR 50 549 -6 9230 116 37 8 chr3 58748995 58750449 -159286709 - L1PA5 LINE L1 -4628 1518 22 29396 49 2 2 chr3 58750450 58755076 -159282082 + L1PA5 LINE L1 1527 6153 -1 180 328 47 16 chr3 58757244 58757308 -159279850 - L2 LINE L2 -2 3311 3246 322 322 33 42 chr3 58757508 58757722 -159279436 + L2 LINE L2 2827 3038 -234 369 233 30 45 chr3 58759967 58760100 -159277058 + GA-rich Low_complexity Low_complexity 6 136 0 198 281 16 47 chr3 58761773 58761837 -159275321 + MIR SINE MIR 3 64 -198 185 167 119 24 chr3 58762566 58762608 -159274550 - L2 LINE L2 -89 3183 3138 198 304 0 0 chr3 58763767 58763823 -159273335 - L2 LINE L2 -13 3259 3204 184 340 0 0 chr3 58764406 58764453 -159272705 + L2 LINE L2 3224 3270 -2 2129 137 0 3 chr3 58764934 58765233 -159271925 - AluSx SINE Alu -12 300 3 2513 72 3 3 chr3 58766608 58766913 -159270245 + AluSp SINE Alu 1 305 -8 294 328 44 49 chr3 58769370 58769574 -159267584 + L2 LINE L2 3086 3288 -25 610 276 175 8 chr3 58769905 58770162 -159266996 + L2 LINE L2 3008 3307 -6 9863 47 2 0 chr3 58770460 58772417 -159264741 + L1PA5 LINE L1 4188 6147 -7 652 230 54 18 chr3 58772510 58772732 -159264426 - L1MC5 LINE L1 -44 7917 7688 1769 180 0 37 chr3 58772915 58773237 -159263921 - AluJo SINE Alu -2 310 1 2091 130 10 0 chr3 58773933 58774226 -159262932 - AluSx SINE Alu -16 296 1 1961 176 0 0 chr3 58782543 58782855 -159254303 - AluJb SINE Alu 0 312 1 238 233 87 78 chr3 58782935 58783038 -159254120 - L2 LINE L2 -9 3304 3201 197 270 54 40 chr3 58783216 58783290 -159253868 + MIR SINE MIR 1 75 -187 510 40 0 27 chr3 58783315 58783389 -159253769 - L1PA5 LINE L1 -1 6153 6082 188 341 71 0 chr3 58783681 58783766 -159253392 - L2 LINE L2 -962 2352 2262 1890 134 34 17 chr3 58784419 58784711 -159252447 + AluJo SINE Alu 1 297 -15 850 160 8 0 chr3 58785881 58786006 -159251152 - FLAM_C SINE Alu -6 127 2 493 255 7 59 chr3 58786703 58786756 -159250402 - MER103 DNA DNA -16 150 96 940 159 0 0 chr3 58786756 58786888 -159250270 - FLAM_A SINE Alu -1 132 1 493 255 7 59 chr3 58786888 58786987 -159250171 - MER103 DNA DNA -70 96 6 27 0 0 0 chr3 58787270 58787297 -159249861 + AT_rich Low_complexity Low_complexity 1 27 0 266 344 22 56 chr3 58787374 58787554 -159249604 + MIR SINE MIR 48 221 -41 309 328 35 9 chr3 58787806 58787922 -159249236 - MIR3 SINE MIR -9 199 81 28 0 0 0 chr3 58789113 58789141 -159248017 + AT_rich Low_complexity Low_complexity 1 28 0 714 120 73 12 chr3 58789171 58789302 -159247856 - L1PA10 LINE L1 -16 6149 6019 2152 105 14 0 chr3 58789400 58789685 -159247473 - AluSx SINE Alu -14 298 10 21 0 0 0 chr3 58789943 58789964 -159247194 + AT_rich Low_complexity Low_complexity 1 21 0 190 317 124 43 chr3 58790022 58790208 -159246950 - MIR3 SINE MIR -7 201 1 704 249 36 6 chr3 58790380 58790545 -159246613 + MER5A DNA MER1_type 7 176 -13 2412 95 0 7 chr3 58790583 58790888 -159246270 + AluSx SINE Alu 1 303 -9 218 286 39 13 chr3 58791185 58791262 -159245896 + MIR SINE MIR 101 179 -83 279 386 53 0 chr3 58791317 58791431 -159245727 - L2 LINE L2 -30 3242 3123 333 325 38 71 chr3 58791579 58791640 -159245518 + L1ME4a LINE L1 5693 5754 -367 2130 108 0 10 chr3 58791640 58791981 -159245177 + AluSq SINE Alu 1 338 0 2185 91 0 70 chr3 58791986 58792315 -159244843 + AluSg SINE Alu 2 307 -3 333 325 38 71 chr3 58792315 58792486 -159244672 + L1ME4a LINE L1 5758 5924 -197 10655 80 13 3 chr3 58792492 58794638 -159242520 - L1PA7 LINE L1 0 6154 3993 16865 116 22 125 chr3 58794640 58796062 -159241096 - L1PA7 LINE L1 -2919 3227 1661 2309 112 0 3 chr3 58796062 58796374 -159240784 + AluY SINE Alu 1 311 0 16865 116 22 125 chr3 58796374 58798534 -159238624 - L1PA7 LINE L1 -4485 1661 12 2327 110 0 0 chr3 58798671 58798980 -159238178 - AluSc SINE Alu 0 309 1 1227 226 98 15 chr3 58799403 58799739 -159237419 + L1ME1 LINE L1 4026 4389 -1757 1401 218 58 38 chr3 58800007 58800179 -159236979 + L1ME1 LINE L1 4383 4550 -1596 2045 135 3 0 chr3 58800179 58800467 -159236691 - AluSx SINE Alu -23 289 1 1401 218 58 38 chr3 58800467 58800763 -159236395 + L1ME1 LINE L1 4550 4860 -1286 1095 109 46 0 chr3 58800767 58800941 -159236217 - L1MA7 LINE L1 -3 6288 6107 378 0 0 0 chr3 58800941 58800983 -159236175 + (TTA)n Simple_repeat Simple_repeat 2 43 0 1207 107 0 0 chr3 58800983 58801142 -159236016 - AluSg/x SINE Alu -28 282 124 442 125 0 0 chr3 58801142 58801206 -159235952 - L1MA7 LINE L1 -184 6107 6044 3510 216 54 13 chr3 58801301 58802554 -159234604 + L1ME1 LINE L1 4849 6148 -18 27 0 0 0 chr3 58802554 58802581 -159234577 + AT_rich Low_complexity Low_complexity 1 27 0 628 310 66 16 chr3 58802641 58802899 -159234259 - L3 LINE CR1 -6 1571 1301 377 214 153 30 chr3 58806782 58806913 -159230245 + MIR3 SINE MIR 41 187 -21 5985 197 57 77 chr3 58808761 58808929 -159228229 + L1M4 LINE L1 16 186 -6460 11663 37 8 30 chr3 58808929 58810347 -159226811 + SVA Other Other 1 1386 0 5985 197 57 77 chr3 58810347 58811150 -159226008 + L1M4 LINE L1 186 1003 -5643 1606 201 14 3 chr3 58811150 58811433 -159225725 + AluJo SINE Alu 3 288 -24 5985 197 57 77 chr3 58811433 58812405 -159224753 + L1M4 LINE L1 1003 1920 -4726 1663 157 3 85 chr3 58812405 58812736 -159224422 + AluJo SINE Alu 7 310 -2 5985 197 57 77 chr3 58812736 58812802 -159224356 + L1M4 LINE L1 1920 1986 -4660 447 52 0 0 chr3 58812803 58812861 -159224297 + (CA)n Simple_repeat Simple_repeat 2 59 0 2446 224 30 44 chr3 58812863 58813643 -159223515 + L1M4 LINE L1 2541 3272 -3372 26360 157 17 26 chr3 58813653 58820159 -159216999 + L1PA10 LINE L1 11 6479 -4 1078 277 27 17 chr3 58820143 58820547 -159216611 + L1M4 LINE L1 3679 4086 -2558 * 2952 189 58 29 chr3 58820541 58820566 -159216592 - L1M2 LINE L1 -723 5455 5432 1381 174 16 99 chr3 58820566 58820769 -159216389 - AluJo SINE Alu -17 295 127 189 0 0 0 chr3 58820769 58820790 -159216368 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1381 174 16 99 chr3 58820790 58820908 -159216250 - AluJo SINE Alu -185 127 1 2952 189 58 29 chr3 58820908 58821424 -159215734 - L1M2 LINE L1 -746 5432 4932 2310 98 3 3 chr3 58821424 58821729 -159215429 - AluSx SINE Alu -7 305 1 2952 189 58 29 chr3 58821729 58821824 -159215334 - L1M2 LINE L1 -1246 4932 4841 2133 65 0 4 chr3 58821824 58822086 -159215072 + AluY SINE Alu 36 296 -15 2952 189 58 29 chr3 58822086 58822303 -159214855 - L1M2 LINE L1 -1337 4841 4616 732 218 37 5 chr3 58822320 58822508 -159214650 - L1M4 LINE L1 -1736 4410 4217 1197 169 14 10 chr3 58822509 58822716 -159214442 + AluJo SINE Alu 87 294 -18 1210 246 23 49 chr3 58822716 58823041 -159214117 - L1M4 LINE L1 -1924 4222 3907 2647 145 48 7 chr3 58823041 58823456 -159213702 + MSTB1 LTR MaLR 1 432 0 1210 246 23 49 chr3 58823456 58823517 -159213641 - L1M4 LINE L1 -2239 3907 3846 5667 181 41 63 chr3 58823525 58823859 -159213299 - L1MA7 LINE L1 0 6877 6537 2524 71 0 0 chr3 58823859 58824169 -159212989 - AluY SINE Alu -1 310 1 5667 181 41 63 chr3 58824169 58825671 -159211487 - L1MA7 LINE L1 -340 6537 5004 1371 138 0 14 chr3 58825671 58825881 -159211277 + AluSg/x SINE Alu 85 291 -19 5667 181 41 63 chr3 58825881 58825952 -159211206 - L1MA7 LINE L1 -1873 5004 4933 975 105 0 0 chr3 58825952 58826076 -159211082 - FLAM_C SINE Alu -19 124 1 5667 181 41 63 chr3 58826076 58827467 -159209691 - L1MA7 LINE L1 -1944 4933 3510 2241 100 13 0 chr3 58827468 58827767 -159209391 - AluSq SINE Alu -10 303 1 1052 195 61 45 chr3 58827770 58827863 -159209295 - L1MA7 LINE L1 -3760 2972 2882 8007 32 18 0 chr3 58827863 58828844 -159208314 - L1PA5 LINE L1 0 6154 5175 1052 195 61 45 chr3 58828844 58829248 -159207910 - L1MA7 LINE L1 -3850 2882 2461 1584 104 69 0 chr3 58829263 58829494 -159207664 - L1PA15 LINE L1 -151 6014 5768 399 106 0 0 chr3 58829626 58829692 -159207466 + (CA)n Simple_repeat Simple_repeat 2 67 0 4852 98 19 28 chr3 58829954 58830153 -159207005 - L1PA15 LINE L1 -3 6162 5963 2240 120 0 0 chr3 58830153 58830453 -159206705 - AluSx SINE Alu -9 303 4 4852 98 19 28 chr3 58830453 58830945 -159206213 - L1PA15 LINE L1 -202 5963 5477 22 0 0 0 chr3 58830945 58830967 -159206191 + AT_rich Low_complexity Low_complexity 1 22 0 1315 181 19 33 chr3 58830990 58831261 -159205897 - AluJo SINE Alu -7 305 39 6182 163 35 14 chr3 58831264 58832610 -159204548 - L1PA15 LINE L1 -676 5489 4124 2124 119 0 7 chr3 58832620 58832913 -159204245 - AluSg SINE Alu -19 291 1 9432 222 57 22 chr3 58832918 58835266 -159201892 - L1MA7 LINE L1 -4694 1959 2 285 379 57 7 chr3 58835233 58835515 -159201643 - L1M3d LINE L1 -5595 1058 763 * 1650 217 0 18 chr3 58835522 58835881 -159201277 - L1 LINE L1 -2302 3844 3507 2257 97 3 34 chr3 58835881 58836202 -159200956 - AluSp SINE Alu 0 313 3 1650 217 0 18 chr3 58836202 58836257 -159200901 - L1 LINE L1 -2639 3507 3453 327 187 40 0 chr3 58836258 58836333 -159200825 + L1MB7 LINE L1 6093 6170 -14 2169 118 13 7 chr3 58836333 58836671 -159200487 + LTR10C LTR ERV1 229 590 -43 437 286 68 64 chr3 58836674 58836954 -159200204 + HAL1 LINE L1 626 906 -1601 550 227 157 52 chr3 58837105 58837159 -159199999 + HAL1 LINE L1 2019 2066 -441 1387 98 133 0 chr3 58837159 58837258 -159199900 - MER30 DNA MER1_type 0 230 146 288 0 0 0 chr3 58837258 58837290 -159199868 + (TA)n Simple_repeat Simple_repeat 2 33 0 1387 98 133 0 chr3 58837290 58837393 -159199765 - MER30 DNA MER1_type -84 146 1 550 227 157 52 chr3 58837393 58837682 -159199476 + HAL1 LINE L1 2066 2398 -109 387 158 0 0 chr3 58837740 58837797 -159199361 - FRAM/FAM SINE Alu -98 77 21 2137 113 7 17 chr3 58839306 58839598 -159197560 - AluSq SINE Alu -24 289 1 258 281 96 30 chr3 58839644 58839779 -159197379 + MIR SINE MIR 118 261 -1 292 219 14 14 chr3 58839826 58839899 -159197259 + MIR SINE MIR 185 257 -5 331 296 17 35 chr3 58841787 58841902 -159195256 - L2 LINE L2 -1 3312 3200 1638 191 3 14 chr3 58843776 58844069 -159193089 - AluJo SINE Alu -22 290 1 330 260 48 19 chr3 58844487 58844591 -159192567 + MIR SINE MIR 40 146 -62 2419 86 7 0 chr3 58845378 58845682 -159191476 - AluY SINE Alu -5 306 1 307 170 0 0 chr3 58845972 58846019 -159191139 + MLT1A1 LTR MaLR 316 362 -3 579 286 87 13 chr3 58847253 58847498 -159189660 + MIR SINE MIR 3 262 0 367 112 56 0 chr3 58848044 58848133 -159189025 + (TA)n Simple_repeat Simple_repeat 2 95 0 330 45 0 0 chr3 58848133 58848177 -159188981 + (GA)n Simple_repeat Simple_repeat 2 45 0 672 167 0 0 chr3 58848930 58849032 -159188126 - AluJb SINE Alu -16 296 195 32141 106 18 57 chr3 58849129 58849586 -159187572 - L1PA7 LINE L1 -11 6143 5670 2250 119 0 3 chr3 58849586 58849898 -159187260 + AluSq SINE Alu 1 311 -2 32141 106 18 57 chr3 58849898 58852412 -159184746 - L1PA7 LINE L1 -484 5670 3060 2318 78 0 0 chr3 58852412 58852726 -159184432 - AluY SINE Alu 0 314 1 32141 106 18 57 chr3 58852726 58856148 -159181010 - L1PA7 LINE L1 -3094 3060 12 2263 117 0 7 chr3 58856261 58856568 -159180590 - AluSx SINE Alu -3 309 5 939 95 0 0 chr3 58858638 58858764 -159178394 + AluY SINE Alu 170 295 -16 2111 136 0 3 chr3 58860381 58860690 -159176468 + AluSq SINE Alu 5 312 -1 2089 122 0 14 chr3 58860702 58860998 -159176160 + AluSx SINE Alu 2 293 -19 760 83 0 0 chr3 58861001 58861097 -159176061 + L1PA5 LINE L1 1 96 -6050 34933 65 7 4 chr3 58861097 58866428 -159170730 + L1PA5 LINE L1 847 6180 0 327 301 174 15 chr3 58866429 58866625 -159170533 + L2 LINE L2 2911 3137 -176 180 0 0 0 chr3 58866627 58866647 -159170511 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2089 130 0 0 chr3 58866651 58866935 -159170223 - AluSx SINE Alu -28 284 1 225 0 0 0 chr3 58866937 58866962 -159170196 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr3 58866962 58866985 -159170173 + AT_rich Low_complexity Low_complexity 1 23 0 6780 65 15 58 chr3 58866985 58868978 -159168180 - SVA Other Other -518 1383 130 394 274 19 32 chr3 58869082 58869239 -159167919 + L2 LINE L2 3158 3312 -1 212 0 36 0 chr3 58869781 58869809 -159167349 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 219 302 47 19 chr3 58869814 58869920 -159167238 + L3 LINE CR1 1315 1423 -154 1378 158 0 5 chr3 58870824 58871039 -159166119 + AluJb SINE Alu 87 300 -12 277 312 74 16 chr3 58871271 58871460 -159165698 + MIR SINE MIR 21 220 -42 1008 165 16 0 chr3 58871614 58871808 -159165350 + L1PA13 LINE L1 5961 6157 -6 1960 158 0 0 chr3 58871824 58872134 -159165024 + AluY SINE Alu 2 311 0 2442 119 9 29 chr3 58872136 58872557 -159164601 + L1MB3 LINE L1 5769 6181 -2 358 286 31 42 chr3 58874604 58874796 -159162362 + L1MC5 LINE L1 7742 7931 -30 3229 125 14 45 chr3 58875758 58876430 -159160728 + L1MA7 LINE L1 5086 5788 -512 2485 210 11 35 chr3 58876430 58876600 -159160558 + L1PB2 LINE L1 4313 4486 -1660 2141 109 0 11 chr3 58876600 58876883 -159160275 + AluSx SINE Alu 5 284 -28 486 96 0 0 chr3 58876883 58876956 -159160202 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 2485 210 11 35 chr3 58876956 58877407 -159159751 + L1PB2 LINE L1 4484 4920 -1226 3515 106 4 1 chr3 58877407 58877976 -159159182 + L1PB2 LINE L1 5171 5741 -410 963 101 20 0 chr3 58877978 58878126 -159159032 + L1PB2 LINE L1 5999 6149 -2 5403 107 24 60 chr3 58878293 58878838 -159158320 + L1PA16 LINE L1 4938 5501 -665 2381 108 0 0 chr3 58878838 58879143 -159158015 + AluSx SINE Alu 3 307 -5 5403 107 24 60 chr3 58879143 58879450 -159157708 + L1PA16 LINE L1 5501 5817 -349 2423 81 0 0 chr3 58879450 58879746 -159157412 + AluSc SINE Alu 1 296 -13 5403 107 24 60 chr3 58879746 58880152 -159157006 + L1PA16 LINE L1 5817 6166 0 1153 157 37 0 chr3 58880152 58880368 -159156790 + L1MA7 LINE L1 5769 5992 -299 376 134 0 103 chr3 58880387 58880484 -159156674 + L1MA7 LINE L1 6205 6291 0 207 0 0 0 chr3 58880522 58880545 -159156613 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2328 107 0 0 chr3 58880798 58881096 -159156062 - AluSx SINE Alu -14 298 1 400 281 39 0 chr3 58884226 58884354 -159152804 + L3b LINE CR1 1312 1444 -139 31 26 0 0 chr3 58886695 58886733 -159150425 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr3 58886988 58887018 -159150140 + AT_rich Low_complexity Low_complexity 1 30 0 1351 217 16 32 chr3 58887023 58887336 -159149822 + AluJo SINE Alu 1 308 -4 236 264 126 88 chr3 58888107 58888266 -159148892 + MER5A DNA MER1_type 1 165 -24 * 324 280 136 0 chr3 58888150 58888268 -159148890 - MER5A DNA MER1_type -22 167 34 854 208 102 20 chr3 58888718 58888915 -159148243 - MER58C DNA MER1_type -2 213 1 319 164 0 0 chr3 58889538 58889593 -159147565 - L1MC4 LINE L1 -1339 6703 6649 2320 94 0 0 chr3 58889593 58889890 -159147268 - AluSx SINE Alu -15 297 1 21 36 0 0 chr3 58889891 58889919 -159147239 + AT_rich Low_complexity Low_complexity 1 28 0 1028 181 22 0 chr3 58891300 58891482 -159145676 + MER5A DNA MER1_type 4 189 0 1966 162 3 0 chr3 58891804 58892113 -159145045 - AluSx SINE Alu -2 310 1 2281 95 7 7 chr3 58892123 58892429 -159144729 - AluSx SINE Alu -6 306 1 183 80 0 0 chr3 58894808 58894833 -159142325 + (A)n Simple_repeat Simple_repeat 1 25 0 1999 141 0 26 chr3 58894863 58895168 -159141990 - AluSx SINE Alu -15 297 1 5668 191 76 21 chr3 58895398 58896797 -159140361 + L1MB4 LINE L1 4015 5491 -784 10945 195 44 17 chr3 58896798 58900707 -159136451 + L1PA13 LINE L1 195 4217 -2580 1956 112 45 0 chr3 58900719 58901015 -159136143 + AluSg SINE Alu 1 308 0 5613 93 1 0 chr3 58901040 58901762 -159135396 + L1PA13 LINE L1 5440 6162 -1 2603 71 0 0 chr3 58901773 58902084 -159135074 + AluY SINE Alu 1 311 0 1484 218 19 31 chr3 58902086 58902503 -159134655 + L1MB4 LINE L1 5768 6179 -1 7194 57 0 0 chr3 59002503 59003614 -159033544 + L1PA5 LINE L1 5042 6152 -2 512 106 0 0 chr3 59003755 59003821 -159033337 + AluY SINE Alu 209 274 -37 273 91 68 0 chr3 59003821 59003865 -159033293 + Alu SINE Alu 238 284 -18 6260 204 22 46 chr3 59003865 59005319 -159031839 + L1M2a LINE L1 262 1680 -5488 2393 213 34 18 chr3 59005338 59006051 -159031107 + L1M2a LINE L1 3560 4283 -2884 234 0 0 0 chr3 59006061 59006087 -159031071 + (TAAAA)n Simple_repeat Simple_repeat 3 28 0 1166 213 59 28 chr3 59006096 59006420 -159030738 + L1M1 LINE L1 11 344 -7221 1754 126 17 7 chr3 59007008 59007309 -159029849 - L1MA4 LINE L1 -5 6295 5992 1100 287 163 7 chr3 59007334 59007748 -159029410 - L2 LINE L2 -222 3091 2599 216 200 0 22 chr3 59008157 59008202 -159028956 + (TGAA)n Simple_repeat Simple_repeat 2 45 0 271 250 59 66 chr3 59008327 59008479 -159028679 + MER65C LTR ERV1 1 151 -310 974 119 0 8 chr3 59008479 59008613 -159028545 + AluSx SINE Alu 36 168 -144 8533 62 2 0 chr3 59008716 59010588 -159026570 + L1PA5 LINE L1 4274 6151 -3 1427 192 32 14 chr3 59010659 59011003 -159026155 - L1MDa LINE L1 -4381 2159 1810 23 68 0 0 chr3 59011007 59011051 -159026107 + AT_rich Low_complexity Low_complexity 1 44 0 1150 213 90 10 chr3 59011091 59011401 -159025757 - L1MB5 LINE L1 -61 6113 5779 2125 114 17 7 chr3 59011401 59011698 -159025460 - AluSq SINE Alu -7 306 7 413 103 0 0 chr3 59011803 59011871 -159025287 + Alu SINE Alu 244 311 0 1292 168 19 19 chr3 59011880 59012136 -159025022 + MER65C LTR ERV1 159 414 -47 1020 187 0 6 chr3 59012136 59012307 -159024851 - FAM SINE Alu -15 170 1 543 322 62 12 chr3 59012907 59013658 -159023500 + HERVL LTR ERVL 4132 4952 -632 234 0 0 0 chr3 59013676 59013702 -159023456 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 300 295 19 0 chr3 59013772 59013877 -159023281 + HERVL LTR ERVL 5086 5192 -572 235 290 0 0 chr3 59014245 59014338 -159022820 + L1 LINE L1 2951 3043 -3103 3706 113 7 7 chr3 59014341 59014932 -159022226 + L1PB1 LINE L1 5561 6151 0 8892 133 21 6 chr3 59015026 59016501 -159020657 + L1P LINE L1 1 1497 -4649 17022 54 6 0 chr3 59016504 59018802 -159018356 + L1P LINE L1 2702 5012 -1134 489 288 89 104 chr3 59018906 59019548 -159017610 + L1 LINE L1 3169 3800 -2346 643 146 0 83 chr3 59019646 59019722 -159017436 + L1 LINE L1 411 471 -7095 1925 94 27 97 chr3 59019722 59020051 -159017107 - AluYb8 SINE Alu -12 306 1 643 146 0 83 chr3 59020051 59020118 -159017040 + L1 LINE L1 471 542 -7024 6929 197 24 17 chr3 59020218 59021678 -159015480 + L1 LINE L1 400 1869 -5696 4777 177 28 29 chr3 59021701 59022890 -159014268 + L1 LINE L1 5566 6752 -813 2773 213 28 7 chr3 59022888 59023502 -159013656 + L1M1 LINE L1 13 639 -6926 * 10441 200 20 17 chr3 59023557 59026075 -159011083 + L1M1 LINE L1 2474 4998 -2567 * 24356 49 9 8 chr3 59026071 59030108 -159007050 + L1PA5 LINE L1 2094 6147 -7 9735 141 37 1 chr3 59030124 59031884 -159005274 + L1M1 LINE L1 4981 6803 -762 339 97 97 0 chr3 59031874 59031936 -159005222 + L1PA11 LINE L1 5968 6035 -139 * 28833 104 14 70 chr3 59031953 59037269 -158999889 + L1P LINE L1 12 5028 -1118 450 0 0 0 chr3 59037445 59037495 -158999663 + (TG)n Simple_repeat Simple_repeat 2 51 0 1456 207 50 0 chr3 59037495 59037756 -158999402 - AluJo SINE Alu -28 284 11 24 32 0 0 chr3 59038147 59038178 -158998980 + AT_rich Low_complexity Low_complexity 1 31 0 226 216 40 14 chr3 59038924 59038998 -158998160 + L1ME4a LINE L1 5966 6041 -80 28 48 0 0 chr3 59039040 59039082 -158998076 + AT_rich Low_complexity Low_complexity 1 42 0 272 237 122 46 chr3 59039173 59039304 -158997854 - LTR33A LTR ERVL -4 519 379 262 248 23 27 chr3 59040446 59040597 -158996561 + L1ME LINE L1 53 203 -5867 800 319 61 28 chr3 59040667 59041096 -158996062 + L1M3c LINE L1 4 446 -5695 2594 227 40 48 chr3 59041372 59042190 -158994968 + L1M3c LINE L1 829 1493 -4718 2512 57 0 21 chr3 59042190 59042521 -158994637 + L1PA5 LINE L1 5826 6149 -5 2594 227 40 48 chr3 59042521 59043075 -158994083 + L1M3c LINE L1 1493 2050 -4161 23 0 0 0 chr3 59043588 59043611 -158993547 + AT_rich Low_complexity Low_complexity 1 23 0 1024 100 7 0 chr3 59043623 59043773 -158993385 - L1PA11 LINE L1 -1 6173 6023 404 185 9 74 chr3 59043787 59043895 -158993263 - MER65A LTR ERV1 -35 410 310 17476 80 14 2 chr3 59043905 59047126 -158990032 - L1PA7 LINE L1 -6 6148 2882 2944 17 0 12 chr3 59047126 59047472 -158989686 + L1PA3 LINE L1 5811 6152 -3 1920 244 44 56 chr3 59047595 59047673 -158989485 + L1MDa LINE L1 24 101 -6439 198 0 0 0 chr3 59047673 59047695 -158989463 + (TA)n Simple_repeat Simple_repeat 2 23 0 1920 244 44 56 chr3 59047695 59048276 -158988882 + L1MDa LINE L1 101 675 -5865 4142 159 39 17 chr3 59048326 59049142 -158988016 + L1MC2 LINE L1 5496 6329 -15 722 184 98 17 chr3 59049164 59049398 -158987760 + L1MDa LINE L1 1577 1829 -4711 343 200 0 0 chr3 59049393 59049463 -158987695 + L1M4 LINE L1 5703 5772 -402 * 1293 190 82 0 chr3 59049589 59049857 -158987301 - MSTB LTR MaLR -136 290 1 2473 219 49 52 chr3 59049857 59050489 -158986669 - L1M4 LINE L1 -1140 5006 4376 2308 103 0 0 chr3 59050489 59050781 -158986377 + AluSx SINE Alu 1 292 -20 2473 219 49 52 chr3 59050781 59051088 -158986070 - L1M4 LINE L1 -1770 4376 4070 767 183 0 0 chr3 59051088 59051214 -158985944 - FLAM_C SINE Alu -7 126 1 213 195 0 0 chr3 59051917 59051958 -158985200 + CT-rich Low_complexity Low_complexity 1 41 0 2076 140 3 37 chr3 59052853 59053202 -158983956 + MER1B DNA MER1_type 1 337 0 2266 75 16 26 chr3 59053230 59053535 -158983623 - AluSc SINE Alu -7 302 1 1715 70 22 0 chr3 59054166 59054395 -158982763 - L1PA8 LINE L1 0 6172 5939 2140 154 8 26 chr3 59054588 59054970 -158982188 - THE1C LTR MaLR 0 375 1 2414 83 0 0 chr3 59055136 59055437 -158981721 + AluSc SINE Alu 1 301 -8 1668 143 12 8 chr3 59055441 59055699 -158981459 + AluSx SINE Alu 40 298 -14 349 288 72 14 chr3 59055733 59055872 -158981286 - L1MEc LINE L1 -4385 2011 1865 4896 182 68 65 chr3 59055874 59056253 -158980905 - Cheshire DNA MER1_type -2 2418 2041 1765 179 10 3 chr3 59056253 59056414 -158980744 - AluJo SINE Alu -15 297 132 207 0 0 0 chr3 59056414 59056437 -158980721 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1765 179 10 3 chr3 59056437 59056565 -158980593 - AluJo SINE Alu -180 132 6 4896 182 68 65 chr3 59056565 59056811 -158980347 - Cheshire DNA MER1_type -379 2041 1797 2243 83 0 7 chr3 59056811 59057089 -158980069 + AluSx SINE Alu 31 306 -6 1252 167 66 4 chr3 59057097 59057355 -158979803 + L1PA16 LINE L1 5888 6161 -5 4896 182 68 65 chr3 59057355 59057466 -158979692 - Cheshire DNA MER1_type -629 1791 1682 2247 113 3 0 chr3 59057466 59057766 -158979392 - AluSq SINE Alu -12 301 1 4896 182 68 65 chr3 59057766 59058455 -158978703 - Cheshire DNA MER1_type -738 1682 921 1569 180 33 3 chr3 59058456 59058789 -158978369 - L1MB7 LINE L1 -57 6127 5785 2619 146 23 27 chr3 59058789 59059274 -158977884 - MER50 LTR ERV1 -83 651 169 1527 192 133 7 chr3 59059358 59059785 -158977373 - L1MB7 LINE L1 -388 5786 5306 1477 191 84 4 chr3 59059786 59060059 -158977099 - AluJb SINE Alu -17 295 1 24513 68 0 3 chr3 59060203 59063582 -158973576 - L1P LINE L1 -2068 4078 711 1273 118 0 0 chr3 59063586 59063764 -158973394 + AluSc SINE Alu 132 309 0 1349 122 75 0 chr3 59064357 59064571 -158972587 + MER30 DNA MER1_type 1 230 0 27 96 0 0 chr3 59064947 59065030 -158972128 + AT_rich Low_complexity Low_complexity 1 83 0 4499 177 14 31 chr3 59065569 59066195 -158970963 + L1MA4 LINE L1 3600 4235 -1911 2669 62 34 0 chr3 59066195 59066549 -158970609 - L1PA8 LINE L1 -2 6170 5805 4499 177 14 31 chr3 59066549 59066887 -158970271 + L1MA4 LINE L1 4235 4548 -1598 1678 188 13 22 chr3 59066887 59067201 -158969957 - AluJo SINE Alu 0 312 2 4499 177 14 31 chr3 59067201 59067267 -158969891 + L1MA4 LINE L1 4548 4614 -1532 231 88 0 0 chr3 59067341 59067375 -158969783 + (A)n Simple_repeat Simple_repeat 1 34 0 17991 174 30 22 chr3 59067375 59071755 -158965403 + L1MA2 LINE L1 102 4447 -3276 1827 173 10 3 chr3 59071755 59072056 -158965102 + AluSx SINE Alu 1 303 -9 17991 174 30 22 chr3 59072056 59072125 -158965033 + L1MA2 LINE L1 4447 4514 -3209 2106 125 3 0 chr3 59072125 59072422 -158964736 + AluY SINE Alu 1 298 -13 17991 174 30 22 chr3 59072422 59072729 -158964429 + L1MA2 LINE L1 4514 4817 -2906 1830 177 0 3 chr3 59072729 59073028 -158964130 + AluJb SINE Alu 1 298 -14 2419 95 0 0 chr3 59073031 59073327 -158963831 + AluSc SINE Alu 1 296 -13 17991 174 30 22 chr3 59073327 59074924 -158962234 + L1MA2 LINE L1 4818 6535 -1188 2078 114 0 0 chr3 59074924 59075197 -158961961 - AluSc SINE Alu -36 273 1 17991 174 30 22 chr3 59075197 59076395 -158960763 + L1MA2 LINE L1 6535 7722 -1 3360 165 33 9 chr3 59076420 59077682 -158959476 + L1MA4 LINE L1 4610 5896 -404 453 380 65 37 chr3 59077694 59078186 -158958972 + L1M4c LINE L1 11 516 -6333 229 296 10 10 chr3 59078973 59079071 -158958087 + L1PA15-16 LINE L1 1473 1570 -5279 396 250 0 17 chr3 59079115 59079235 -158957923 + L1PA15-16 LINE L1 1412 1529 -5321 1405 267 50 37 chr3 59079242 59080050 -158957108 + L1M4c LINE L1 2123 3428 -3420 10440 145 67 14 chr3 59080053 59081888 -158955270 + L1PA16 LINE L1 1 2567 -5017 2370 89 0 7 chr3 59081888 59082192 -158954966 + AluSc SINE Alu 1 302 -7 10440 145 67 14 chr3 59082192 59082943 -158954215 + L1PA16 LINE L1 2567 3277 -4307 435 19 0 0 chr3 59082943 59082995 -158954163 + (TTA)n Simple_repeat Simple_repeat 3 54 0 6961 57 33 0 chr3 59082995 59083972 -158953186 - L1PA6 LINE L1 -18 6136 5152 6397 195 22 29 chr3 59083980 59084783 -158952375 + L1PA16 LINE L1 4820 5627 -1977 6436 75 14 10 chr3 59084783 59085802 -158951356 + L1PA11 LINE L1 5169 6200 0 6397 195 22 29 chr3 59085802 59086040 -158951118 + L1PA16 LINE L1 5627 5865 -1739 231 114 0 0 chr3 59086040 59086075 -158951083 + (CACAA)n Simple_repeat Simple_repeat 4 38 0 6397 195 22 29 chr3 59086075 59086710 -158950448 + L1PA16 LINE L1 5865 6503 -1101 1444 197 27 27 chr3 59086710 59087010 -158950148 + AluJo SINE Alu 1 300 -12 6397 195 22 29 chr3 59087010 59088140 -158949018 + L1PA16 LINE L1 6503 7603 -1 2133 141 25 10 chr3 59088140 59088537 -158948621 + L1MA4 LINE L1 5879 6289 -11 255 204 51 31 chr3 59088984 59089082 -158948076 + L1M4 LINE L1 5112 5211 -935 10342 162 12 24 chr3 59089123 59091064 -158946094 + L1PA15-16 LINE L1 12 1929 -4920 1926 109 76 0 chr3 59091064 59091340 -158945818 - AluSx SINE Alu -15 297 1 10342 162 12 24 chr3 59091340 59091514 -158945644 + L1PA15-16 LINE L1 1929 2103 -4746 804 164 0 0 chr3 59091514 59091636 -158945522 - FLAM_C SINE Alu -10 123 2 988 186 6 0 chr3 59091822 59091989 -158945169 + AluJb SINE Alu 138 305 -7 447 137 0 0 chr3 59092022 59092095 -158945063 + (TG)n Simple_repeat Simple_repeat 2 74 0 1758 211 0 0 chr3 59092105 59092403 -158944755 + AluJb SINE Alu 2 299 -13 5939 252 41 31 chr3 59092429 59093535 -158943623 + L1PA15-16 LINE L1 2134 3227 -3622 2150 149 3 0 chr3 59093535 59093837 -158943321 - AluSx SINE Alu -9 303 1 5939 252 41 31 chr3 59093837 59095067 -158942091 + L1PA15-16 LINE L1 3227 4494 -2355 433 163 11 22 chr3 59095067 59095159 -158941999 + MER68 LTR ERV1 407 497 -65 305 225 50 0 chr3 59095371 59095451 -158941707 - MIR SINE MIR -26 236 153 397 224 93 16 chr3 59095455 59095638 -158941520 - L1MC5 LINE L1 -53 7908 7712 239 118 0 0 chr3 59095662 59095696 -158941462 - Alu SINE Alu -81 219 186 1830 144 55 0 chr3 59096207 59096498 -158940660 - AluSx SINE Alu -5 307 1 1766 167 0 17 chr3 59096918 59097205 -158939953 + AluJo SINE Alu 1 282 -30 294 79 0 0 chr3 59097409 59097447 -158939711 + U2 snRNA snRNA 1 38 -150 421 285 75 35 chr3 59098023 59098323 -158938835 + MLT1H1 LTR MaLR 261 555 0 21 36 0 0 chr3 59098599 59098627 -158938531 + AT_rich Low_complexity Low_complexity 1 28 0 1086 193 24 9 chr3 59098706 59098919 -158938239 + MER20 DNA MER1_type 1 216 -3 188 380 113 20 chr3 59099991 59100141 -158937017 - MIR3 SINE MIR -14 194 31 272 200 0 0 chr3 59100769 59100824 -158936334 + L1MC1 LINE L1 18 72 -6470 * 2988 169 18 22 chr3 59100821 59101373 -158935785 + L1MC1 LINE L1 5240 5793 -1038 2328 102 0 0 chr3 59101373 59101663 -158935495 + AluSg SINE Alu 1 291 -15 642 60 0 0 chr3 59101663 59101746 -158935412 + (GGGGA)n Simple_repeat Simple_repeat 4 86 0 2988 169 18 22 chr3 59101750 59102319 -158934839 + L1MC1 LINE L1 5793 6366 -465 317 156 16 94 chr3 59102365 59102429 -158934729 - L1ME1 LINE L1 -146 6020 5962 611 256 24 89 chr3 59103420 59103761 -158933397 + L2 LINE L2 2721 3068 -245 2518 112 16 13 chr3 59103801 59104175 -158932983 + THE1C LTR MaLR 1 375 0 6101 97 42 79 chr3 59104176 59105275 -158931883 + THE1C-int LTR MaLR 2 1059 -521 2816 134 106 37 chr3 59105282 59105878 -158931280 + MER41B-int LTR ERV1 2865 3501 -4036 901 165 0 0 chr3 59105877 59106035 -158931123 + MER41B-int LTR ERV1 4325 4482 -1464 * 741 124 0 0 chr3 59106031 59106152 -158931006 + MER41B-int LTR ERV1 2825 2945 -3001 * 15511 104 37 20 chr3 59106140 59108743 -158928415 + MER41B-int LTR ERV1 3300 5946 0 1213 87 6 0 chr3 59108743 59108916 -158928242 + MER41B LTR ERV1 1 174 -461 3109 81 0 0 chr3 59108917 59109359 -158927799 - L1PA7 LINE L1 -847 5299 4858 6447 71 11 1 chr3 59109359 59110200 -158926958 + L1PA7 LINE L1 5304 6154 0 354 23 0 0 chr3 59110209 59110252 -158926906 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2695 85 19 0 chr3 59110252 59110630 -158926528 + MER41B LTR ERV1 165 549 -86 363 256 34 26 chr3 59111555 59111672 -158925486 + MARNA DNA Mariner 61 178 -408 408 271 58 9 chr3 59112101 59112325 -158924833 + L1MDa LINE L1 1759 2038 -4549 216 0 0 0 chr3 59112347 59112371 -158924787 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2244 111 0 0 chr3 59112428 59112725 -158924433 + AluSg SINE Alu 3 299 -11 2267 123 0 13 chr3 59112733 59113049 -158924109 + AluSx SINE Alu 1 312 0 385 278 72 58 chr3 59113076 59113215 -158923943 + L1MDa LINE L1 2239 2375 -4346 1927 121 62 0 chr3 59113215 59113488 -158923670 + AluSx SINE Alu 7 296 -16 385 278 72 58 chr3 59113488 59113711 -158923447 + L1MDa LINE L1 2375 2606 -4115 555 77 13 0 chr3 59113754 59113832 -158923326 + MADE1 DNA Mariner 2 80 0 1905 179 11 19 chr3 59113842 59114210 -158922948 + MLT1A1 LTR MaLR 1 365 0 2124 235 75 36 chr3 59114222 59115022 -158922136 - HAL1 LINE L1 -936 1571 741 531 270 116 0 chr3 59115059 59115318 -158921840 - LTR50 LTR ERVL -1 794 506 519 236 91 12 chr3 59115494 59115659 -158921499 - LTR50 LTR ERVL -617 178 1 899 274 34 34 chr3 59115659 59115980 -158921178 - HAL1 LINE L1 -1799 708 388 614 285 150 8 chr3 59115997 59116264 -158920894 - HAL1 LINE L1 -2187 320 16 25 0 0 0 chr3 59116375 59116400 -158920758 + AT_rich Low_complexity Low_complexity 1 25 0 294 388 101 5 chr3 59117395 59117604 -158919554 + MIR SINE MIR 33 261 -1 5783 23 1 14 chr3 59117625 59118301 -158918857 + SVA Other Other 740 1386 0 1863 171 10 3 chr3 59118644 59118937 -158918221 + AluJo SINE Alu 1 295 -17 4504 155 35 46 chr3 59118993 59119840 -158917318 + L1PA16 LINE L1 4215 5070 -1096 2519 53 0 3 chr3 59119840 59120142 -158917016 + AluY SINE Alu 1 301 -10 4504 155 35 46 chr3 59120142 59121044 -158916114 + L1PA16 LINE L1 5070 5933 -233 2184 158 25 34 chr3 59121135 59121451 -158915707 - MER41B LTR ERV1 -12 597 250 2243 123 0 0 chr3 59121451 59121760 -158915398 - AluSx SINE Alu -3 309 1 2184 158 25 34 chr3 59121760 59121908 -158915250 - MER41B LTR ERV1 -359 250 102 287 332 29 43 chr3 59123046 59123254 -158913904 + HAL1 LINE L1 195 399 -2108 302 266 135 49 chr3 59123599 59123843 -158913315 + HAL1 LINE L1 817 1081 -1426 1055 181 13 35 chr3 59123843 59124070 -158913088 + AluJb SINE Alu 1 222 -90 2439 79 10 16 chr3 59124070 59124556 -158912602 + MER41A LTR ERV1 1 554 0 555 143 11 0 chr3 59124556 59124647 -158912511 + AluJb SINE Alu 219 310 -2 342 246 41 56 chr3 59124649 59124819 -158912339 + HAL1 LINE L1 1075 1241 -1266 2215 101 10 0 chr3 59124819 59125116 -158912042 + AluSx SINE Alu 1 300 -12 342 246 41 56 chr3 59125116 59125213 -158911945 + HAL1 LINE L1 1241 1338 -1169 1375 164 166 25 chr3 59125256 59125690 -158911468 + LTR54B LTR ERV1 1 495 -3 639 243 45 65 chr3 59125690 59125982 -158911176 + HAL1 LINE L1 1538 1823 -684 484 255 139 5 chr3 59126032 59126248 -158910910 + HAL1 LINE L1 1976 2220 -287 2285 113 0 0 chr3 59126317 59126626 -158910532 + AluSc SINE Alu 1 309 0 247 162 0 59 chr3 59126626 59126694 -158910464 + HAL1 LINE L1 2312 2375 -132 722 179 46 95 chr3 59126787 59126873 -158910285 + L1MD3 LINE L1 7746 7835 -160 1569 194 3 3 chr3 59126873 59127157 -158910001 + AluJb SINE Alu 1 284 -28 722 179 46 95 chr3 59127157 59127333 -158909825 + L1MD3 LINE L1 7835 7995 0 326 292 36 18 chr3 59127552 59127720 -158909438 - L1ME3A LINE L1 -223 5947 5777 271 218 0 0 chr3 59127727 59127782 -158909376 + Tigger5 DNA MER2_type 1 55 -2268 * 402 130 14 14 chr3 59127755 59127824 -158909334 + Tigger5 DNA MER2_type 2255 2323 0 1826 146 35 7 chr3 59127889 59128177 -158908981 - AluJo SINE Alu -5 307 12 449 163 0 23 chr3 59128182 59128268 -158908890 + Tigger5 DNA MER2_type 2240 2323 0 262 242 53 21 chr3 59128268 59128363 -158908795 - L1ME3A LINE L1 -2032 5776 5679 241 329 0 0 chr3 59128510 59128589 -158908569 + LTR50 LTR ERVL 1 79 -716 1262 169 24 61 chr3 59128590 59128947 -158908211 + MLT2B1 LTR ERVL 1 331 -83 417 231 43 107 chr3 59129405 59129639 -158907519 + LTR41 LTR ERVL 544 762 -11 308 225 28 0 chr3 59129763 59129834 -158907324 - L1ME3A LINE L1 -503 5661 5589 224 210 0 16 chr3 59129976 59130038 -158907120 + CT-rich Low_complexity Low_complexity 4 64 0 1568 152 24 59 chr3 59130039 59130328 -158906830 - AluJo SINE Alu -33 279 1 1155 205 42 23 chr3 59130461 59130768 -158906390 - L1ME2 LINE L1 -11 6153 5841 2031 256 72 44 chr3 59130821 59130890 -158906268 - L1ME3A LINE L1 -5 6165 6099 2062 103 32 0 chr3 59130890 59131171 -158905987 - AluSq SINE Alu -23 290 1 2031 256 72 44 chr3 59131171 59131298 -158905860 - L1ME3A LINE L1 -71 6099 5977 1742 153 19 0 chr3 59131298 59131560 -158905598 - AluJo SINE Alu -23 289 23 2031 256 72 44 chr3 59131560 59132249 -158904909 - L1ME3A LINE L1 -193 5977 5254 604 294 61 6 chr3 59132270 59132596 -158904562 - L1ME3A LINE L1 -936 5210 4867 1203 237 97 51 chr3 59132911 59133403 -158903755 - L1ME3A LINE L1 -1311 4835 4298 1548 189 56 11 chr3 59133403 59133673 -158903485 + AluJb SINE Alu 1 282 -30 1203 237 97 51 chr3 59133673 59133890 -158903268 - L1ME3A LINE L1 -1848 4298 4093 988 158 21 16 chr3 59133891 59134081 -158903077 + MSTB1 LTR MaLR 1 191 -241 747 131 0 0 chr3 59134083 59134190 -158902968 + FRAM SINE Alu 64 170 -6 10622 213 48 11 chr3 59134201 59136653 -158900505 + L1M2 LINE L1 14 2374 -4414 5732 94 14 27 chr3 59136653 59138367 -158898791 + SVA Other Other 5 1386 0 10622 213 48 11 chr3 59138367 59139813 -158897345 + L1M2 LINE L1 2374 3765 -3023 1801 164 193 54 chr3 59139813 59140348 -158896810 + LTR10A LTR ERV1 1 609 0 10622 213 48 11 chr3 59140348 59142837 -158894321 + L1M2 LINE L1 3765 5978 -810 1617 111 34 10 chr3 59143517 59143815 -158893343 + L1M2 LINE L1 5946 6250 -689 16767 187 31 22 chr3 59143937 59144746 -158892412 + L1PA13 LINE L1 903 1703 -5122 2361 95 3 0 chr3 59144746 59145052 -158892106 + AluSp SINE Alu 1 307 -6 2036 81 46 11 chr3 59145053 59145338 -158891820 + AluY SINE Alu 1 295 -16 16767 187 31 22 chr3 59145338 59145744 -158891414 + L1PA13 LINE L1 1703 2104 -4721 1955 112 0 0 chr3 59145744 59146004 -158891154 + AluSc SINE Alu 43 302 -7 16767 187 31 22 chr3 59146004 59147723 -158889435 + L1PA13 LINE L1 2104 3806 -3019 2019 120 13 13 chr3 59147723 59148031 -158889127 + AluSq SINE Alu 1 308 -5 16767 187 31 22 chr3 59148031 59149805 -158887353 + L1PA13 LINE L1 3806 5674 -1151 2312 92 0 32 chr3 59149805 59150121 -158887037 + AluSx SINE Alu 1 306 -6 16767 187 31 22 chr3 59150121 59150571 -158886587 + L1PA13 LINE L1 5674 6118 -707 4451 150 46 20 chr3 59150571 59151347 -158885811 + L1PB1 LINE L1 2308 3063 -3799 1606 182 10 32 chr3 59151347 59151660 -158885498 + AluSx SINE Alu 1 306 -6 4451 150 46 20 chr3 59151660 59152476 -158884682 + L1PB1 LINE L1 3063 3936 -2926 215 267 0 22 chr3 59152537 59152627 -158884531 + CT-rich Low_complexity Low_complexity 3 90 0 2297 65 11 0 chr3 59153834 59154113 -158883045 - AluSp SINE Alu -18 295 14 8025 173 16 34 chr3 59155137 59156214 -158880944 + L1PB1 LINE L1 3927 5022 -1845 2221 107 3 0 chr3 59156214 59156504 -158880654 - AluSq SINE Alu -22 291 1 8025 173 16 34 chr3 59156504 59156608 -158880550 + L1PB1 LINE L1 5022 5126 -1741 180 0 0 0 chr3 59156608 59156628 -158880530 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 8025 173 16 34 chr3 59156628 59157215 -158879943 + L1PB1 LINE L1 5126 5722 -1145 2108 120 3 0 chr3 59157215 59157499 -158879659 + AluSx SINE Alu 5 289 -23 8025 173 16 34 chr3 59157499 59158333 -158878825 + L1PB1 LINE L1 5722 6496 -371 234 105 0 0 chr3 59158333 59158371 -158878787 + (CA)n Simple_repeat Simple_repeat 2 39 0 8025 173 16 34 chr3 59158371 59158737 -158878421 + L1PB1 LINE L1 6496 6867 0 270 0 0 0 chr3 59158769 59158799 -158878359 + (CA)n Simple_repeat Simple_repeat 2 31 0 2440 14 7 0 chr3 59158814 59159090 -158878068 + AluY SINE Alu 29 306 -5 4308 129 8 0 chr3 59159090 59159756 -158877402 + L1PA13 LINE L1 6141 6811 -3 22 35 0 0 chr3 59159756 59159785 -158877373 + AT_rich Low_complexity Low_complexity 1 29 0 1757 159 13 29 chr3 59159806 59160115 -158877043 + AluJb SINE Alu 1 304 -8 188 33 0 33 chr3 59160153 59160183 -158876975 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 3265 146 76 0 chr3 59160207 59160823 -158876335 + L1MA5A LINE L1 5635 6297 0 1502 135 16 4 chr3 59160827 59161071 -158876087 + MSTB1 LTR MaLR 186 432 0 2377 102 0 6 chr3 59161696 59162011 -158875147 + AluSq SINE Alu 1 313 0 1292 126 39 0 chr3 59162150 59162380 -158874778 + L1MA3 LINE L1 6036 6274 -31 328 167 48 24 chr3 59163212 59163296 -158873862 + L1M4 LINE L1 4595 4680 -1466 5309 162 38 14 chr3 59163302 59164181 -158872977 + L1PB2 LINE L1 3985 4842 -1309 2051 142 33 41 chr3 59164181 59164548 -158872610 + THE1B LTR MaLR 1 364 0 5309 162 38 14 chr3 59164548 59165782 -158871376 + L1PB2 LINE L1 4842 6147 -4 243 250 60 0 chr3 59165843 59165943 -158871215 + L1M4 LINE L1 3194 3299 -2847 2883 249 100 13 chr3 59165944 59167179 -158869979 + L1M4 LINE L1 3328 4669 -1477 3671 166 21 5 chr3 59168013 59168776 -158868382 - L1 LINE L1 -1068 5078 4304 6530 133 36 43 chr3 59168796 59169501 -158867657 - L1MA1 LINE L1 -12 6290 5582 2531 74 0 0 chr3 59169501 59169811 -158867347 - AluY SINE Alu -1 310 1 6530 133 36 43 chr3 59169811 59171358 -158865800 - L1MA1 LINE L1 -720 5582 4054 2183 148 5 34 chr3 59171355 59171545 -158865613 - L1 LINE L1 -1828 4318 4124 * 2336 100 0 3 chr3 59171545 59171845 -158865313 - AluSx SINE Alu -13 299 1 2183 148 5 34 chr3 59171845 59172067 -158865091 - L1 LINE L1 -2022 4124 3918 2684 128 99 18 chr3 59172111 59172773 -158864385 + L1MA6 LINE L1 5105 5811 -489 2057 20 0 0 chr3 59172770 59173024 -158864134 - L1PA5 LINE L1 -2226 3920 3667 * 11469 53 6 0 chr3 59173024 59175253 -158861905 + L1PA5 LINE L1 3921 6152 -2 2979 103 30 28 chr3 59175253 59175753 -158861405 + L1MA6 LINE L1 5797 6300 0 33 0 0 0 chr3 59175754 59175787 -158861371 + AT_rich Low_complexity Low_complexity 1 33 0 2442 97 0 6 chr3 59175994 59176305 -158860853 + AluSx SINE Alu 1 309 -3 676 158 0 0 chr3 59176336 59176437 -158860721 + AluSq/x SINE Alu 21 121 -191 207 0 0 0 chr3 59176437 59176460 -158860698 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 659 171 0 34 chr3 59176589 59176706 -158860452 - FLAM_A SINE Alu -20 122 10 934 208 11 0 chr3 59176814 59176997 -158860161 + MER2 DNA MER2_type 1 185 -160 434 139 83 0 chr3 59177038 59177110 -158860048 + MER2 DNA MER2_type 268 345 0 1399 227 54 0 chr3 59177133 59177525 -158859633 + Cheshire DNA MER1_type 519 931 -1489 715 251 43 46 chr3 59177526 59177795 -158859363 + L1MB3 LINE L1 3182 3451 -2695 2133 126 0 7 chr3 59177795 59178104 -158859054 + AluSx SINE Alu 1 307 -5 715 251 43 46 chr3 59178104 59178184 -158858974 + L1MB3 LINE L1 3451 3530 -2616 260 179 18 18 chr3 59178184 59178240 -158858918 + Tigger5 DNA MER2_type 1 56 -2267 * 320 167 17 17 chr3 59178220 59178280 -158858878 + Tigger5 DNA MER2_type 2264 2323 0 423 222 0 0 chr3 59178327 59178408 -158858750 + Tigger5 DNA MER2_type 2243 2323 0 390 294 78 20 chr3 59178410 59178563 -158858595 + L1MB3 LINE L1 3539 3700 -2446 369 197 197 34 chr3 59178606 59178753 -158858405 + L1MB3 LINE L1 3907 4077 -2069 4317 40 4 0 chr3 59179109 59179635 -158857523 - L1PA5 LINE L1 0 6154 5627 40 59 0 0 chr3 59180187 59180255 -158856903 + AT_rich Low_complexity Low_complexity 1 68 0 257 174 0 87 chr3 59180288 59180300 -158856858 + L1MB3 LINE L1 4242 4253 -1893 2433 67 7 0 chr3 59180300 59180598 -158856560 + AluY SINE Alu 3 302 -9 257 174 0 87 chr3 59180598 59180661 -158856497 + L1MB3 LINE L1 4253 4310 -1836 1937 182 8 0 chr3 59180661 59181024 -158856134 - MER47A DNA MER2_type 0 366 1 257 174 0 87 chr3 59181024 59181039 -158856119 + L1MB3 LINE L1 4310 4325 -1821 1833 200 39 9 chr3 59181042 59181505 -158855653 + L1MB3 LINE L1 4818 5323 -860 1726 158 9 66 chr3 59181505 59181822 -158855336 - AluJo SINE Alu -13 299 1 1833 200 39 9 chr3 59181822 59182126 -158855032 + L1MB3 LINE L1 5323 5616 -567 250 155 82 21 chr3 59182126 59182223 -158854935 + (TTTAA)n Simple_repeat Simple_repeat 5 107 0 1453 163 67 3 chr3 59182226 59182526 -158854632 + L1MB3 LINE L1 5603 5921 -262 265 250 0 0 chr3 59182528 59182580 -158854578 + Tigger5 DNA MER2_type 2 53 -2270 906 187 10 15 chr3 59182631 59182829 -158854329 + L1MB3 LINE L1 5930 6126 -57 305 24 24 0 chr3 59182829 59182870 -158854288 - 5S rRNA rRNA -79 42 1 225 135 39 0 chr3 59182871 59182923 -158854235 + L1MB3 LINE L1 6114 6167 -16 1924 202 76 43 chr3 59182960 59183170 -158853988 + L1ME1 LINE L1 4656 4858 -1288 2551 60 0 10 chr3 59183170 59183484 -158853674 - AluY SINE Alu 0 311 1 1924 202 76 43 chr3 59183484 59183902 -158853256 + L1ME1 LINE L1 4858 5305 -841 1564 128 13 4 chr3 59183906 59184141 -158853017 + AluSx SINE Alu 1 237 -75 951 173 29 0 chr3 59184248 59184541 -158852617 + L1MB4 LINE L1 5821 6174 -6 2176 238 41 29 chr3 59184655 59185488 -158851670 + L1ME1 LINE L1 5285 6310 -24 309 320 8 16 chr3 59185549 59185674 -158851484 - MIR SINE MIR -119 143 20 461 184 134 78 chr3 59185713 59185892 -158851266 - L2 LINE L2 -4 3309 3121 1644 218 85 23 chr3 59187077 59187972 -158849186 + L1M3e LINE L1 1445 2401 -4636 2122 145 42 47 chr3 59187981 59188233 -158848925 + MSTA LTR MaLR 1 252 -176 7173 44 4 13 chr3 59188233 59188527 -158848631 + L1PA5 LINE L1 5070 5365 -789 2517 54 14 0 chr3 59188527 59188822 -158848336 + AluY SINE Alu 1 299 -12 7173 44 4 13 chr3 59188822 59189618 -158847540 + L1PA5 LINE L1 5365 6153 -1 2122 145 42 47 chr3 59189618 59189793 -158847365 + MSTA LTR MaLR 252 426 -2 1431 255 55 11 chr3 59189820 59189883 -158847275 + L1M4 LINE L1 1292 1351 -5031 1928 135 30 3 chr3 59189883 59190187 -158846971 + AluSx SINE Alu 1 312 0 1431 255 55 11 chr3 59190187 59190616 -158846542 + L1M4 LINE L1 1351 1760 -4622 2355 74 10 3 chr3 59190616 59190913 -158846245 + AluY SINE Alu 1 299 -12 1431 255 55 11 chr3 59190913 59190942 -158846216 + L1M4 LINE L1 1760 2318 -4064 1329 168 90 8 chr3 59191051 59191295 -158845863 - AluJo SINE Alu -45 267 4 1028 148 158 0 chr3 59191316 59191499 -158845659 - AluSq SINE Alu -17 296 85 2152 236 38 64 chr3 59191501 59191632 -158845526 + L1M4 LINE L1 3720 3853 -2529 2213 113 0 3 chr3 59191632 59191925 -158845233 - AluSx SINE Alu -20 292 1 2152 236 38 64 chr3 59191925 59192030 -158845128 + L1M4 LINE L1 3853 3959 -2423 1783 172 0 10 chr3 59192030 59192321 -158844837 + AluJo SINE Alu 3 290 -22 2473 70 0 7 chr3 59192331 59192630 -158844528 + AluY SINE Alu 1 297 -14 2152 236 38 64 chr3 59192630 59192770 -158844388 + L1M4 LINE L1 3968 4110 -2272 1476 174 7 14 chr3 59192770 59193057 -158844101 + L1MC1 LINE L1 6049 6333 0 2152 236 38 64 chr3 59193057 59193526 -158843632 + L1M4 LINE L1 4110 4556 -1826 2378 52 6 46 chr3 59193579 59193905 -158843253 + L1PA10 LINE L1 5846 6158 -10 1656 165 0 25 chr3 59193909 59194194 -158842964 - AluJo SINE Alu -34 278 1 311 242 88 50 chr3 59194197 59194457 -158842701 + L1M4 LINE L1 4552 4821 -1561 637 144 0 0 chr3 59194474 59194564 -158842594 - AluJ/FLAM SINE Alu -221 91 2 2356 236 43 23 chr3 59194627 59195471 -158841687 - L1MCc LINE L1 -3413 4152 3326 1102 130 17 87 chr3 59195471 59195702 -158841456 + L1MA8 LINE L1 6073 6287 -4 1865 145 35 11 chr3 59195710 59195992 -158841166 + AluJo SINE Alu 1 289 -23 2356 236 43 23 chr3 59195992 59196039 -158841119 - L1MCc LINE L1 -4245 3320 3237 2265 219 70 79 chr3 59196180 59196920 -158840238 - L1MEc LINE L1 -3007 3637 2892 207 0 0 0 chr3 59196920 59196943 -158840215 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2254 90 0 0 chr3 59196945 59197222 -158839936 - AluSx SINE Alu -35 277 1 2265 219 70 79 chr3 59197222 59197573 -158839585 - L1MEc LINE L1 -3753 2891 2588 2453 239 45 46 chr3 59197582 59198340 -158838818 - L1MEc LINE L1 -5277 1265 509 1538 168 48 17 chr3 59198366 59198658 -158838500 - MER2 DNA MER2_type 0 345 45 355 304 131 33 chr3 59198756 59199115 -158838043 - L1MEc LINE L1 -6065 477 84 240 274 0 0 chr3 59199242 59199315 -158837843 - L1MCc LINE L1 -4453 3293 3221 233 221 44 29 chr3 59199402 59199470 -158837688 - L1MCc LINE L1 -5047 2518 2450 1986 114 50 4 chr3 59199471 59199633 -158837525 - AluSx SINE Alu -15 297 115 6752 64 7 2 chr3 59199633 59200968 -158836190 - L1PA7 LINE L1 -1 6153 4804 1986 114 50 4 chr3 59200968 59201085 -158836073 - AluSx SINE Alu -197 115 5 800 284 55 42 chr3 59201086 59201405 -158835753 - L1MCc LINE L1 -4907 2140 2133 1893 160 3 6 chr3 59201405 59201717 -158835441 + AluJb SINE Alu 1 311 -1 800 284 55 42 chr3 59201717 59201968 -158835190 - L1MCc LINE L1 -4914 2133 1887 4899 124 15 77 chr3 59202591 59204335 -158832823 + L1PA13 LINE L1 4457 6152 -11 664 107 90 16 chr3 59204445 59204567 -158832591 - L1M3 LINE L1 -388 5792 5662 7307 29 0 0 chr3 59204571 59205411 -158831747 - L1PA3 LINE L1 -1 6154 5315 * 13630 35 5 1 chr3 59205410 59207050 -158830108 + L1P LINE L1 905 2551 -3595 2891 184 61 40 chr3 59207049 59207733 -158829425 - L1M3 LINE L1 -507 5673 4966 * 1909 164 3 3 chr3 59207733 59208031 -158829127 - AluJb SINE Alu -14 298 1 2891 184 61 40 chr3 59208031 59208406 -158828752 - L1M3 LINE L1 -1214 4966 4600 1329 137 11 0 chr3 59208448 59208638 -158828520 - AluSx SINE Alu -118 194 3 825 202 141 0 chr3 59208648 59208846 -158828312 - L1M3 LINE L1 -1542 4604 4379 4028 210 39 53 chr3 59209247 59209405 -158827753 - L1M4 LINE L1 -849 5297 5138 2338 108 10 0 chr3 59209405 59209701 -158827457 - AluSx SINE Alu -12 300 2 4028 210 39 53 chr3 59209701 59209847 -158827311 - L1M4 LINE L1 -1008 5138 4992 2298 163 70 2 chr3 59209847 59210246 -158826912 - MSTB LTR MaLR 0 426 1 4028 210 39 53 chr3 59210246 59210877 -158826281 - L1M4 LINE L1 -1154 4992 4380 2257 100 7 0 chr3 59210877 59211167 -158825991 + AluSx SINE Alu 1 292 -20 4028 210 39 53 chr3 59211167 59211472 -158825686 - L1M4 LINE L1 -1766 4380 4072 765 188 0 0 chr3 59211472 59211600 -158825558 - FLAM_C SINE Alu -5 128 1 213 195 0 0 chr3 59212303 59212344 -158824814 + CT-rich Low_complexity Low_complexity 1 41 0 2086 143 3 37 chr3 59213239 59213588 -158823570 + MER1B DNA MER1_type 1 337 0 2282 75 16 26 chr3 59213616 59213921 -158823237 - AluSc SINE Alu -7 302 1 1680 71 36 0 chr3 59214552 59214776 -158822382 - L1PA8 LINE L1 -2 6170 5939 2193 150 11 26 chr3 59214969 59215350 -158821808 - THE1C LTR MaLR 0 375 1 2438 83 0 0 chr3 59215516 59215817 -158821341 + AluSc SINE Alu 1 301 -8 1657 142 12 8 chr3 59215821 59216075 -158821083 + AluSx SINE Alu 40 294 -18 255 288 72 14 chr3 59216109 59216248 -158820910 - L1MEc LINE L1 -4385 2011 1865 2681 181 39 31 chr3 59216250 59216629 -158820529 - Cheshire DNA MER1_type -2 2418 2031 1725 183 10 3 chr3 59216629 59216790 -158820368 - AluJo SINE Alu -15 297 132 207 0 0 0 chr3 59216790 59216813 -158820345 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1725 183 10 3 chr3 59216813 59216941 -158820217 - AluJo SINE Alu -180 132 6 2681 181 39 31 chr3 59216941 59217147 -158820011 - Cheshire DNA MER1_type -389 2031 1828 2046 92 0 4 chr3 59217187 59217448 -158819710 + AluSq SINE Alu 31 290 -23 183 42 0 0 chr3 59217448 59217472 -158819686 + (CCAA)n Simple_repeat Simple_repeat 2 25 0 4074 195 104 24 chr3 59217849 59219305 -158817853 - L1MB7 LINE L1 0 6184 4606 949 114 0 0 chr3 59219308 59219439 -158817719 - AluSg/x SINE Alu -16 296 166 1516 225 38 61 chr3 59219686 59219856 -158817302 - L1MA4 LINE L1 0 6300 6127 1810 129 24 14 chr3 59219856 59220143 -158817015 + AluSx SINE Alu 5 294 -18 1516 225 38 61 chr3 59220143 59220478 -158816680 - L1MA4 LINE L1 -173 6127 5807 201 162 0 0 chr3 59220478 59220515 -158816643 + T-rich Low_complexity Low_complexity 1 37 0 1751 196 112 48 chr3 59220795 59221270 -158815888 + MLT1D LTR MaLR 1 505 0 415 171 36 63 chr3 59221275 59221386 -158815772 + MLT1D-int LTR MaLR 6 113 -1258 188 250 50 0 chr3 59222474 59222534 -158814624 + MIR SINE MIR 83 145 -63 1353 140 0 27 chr3 59223589 59223810 -158813348 + AluSg/x SINE Alu 83 297 -13 434 90 0 30 chr3 59224732 59224799 -158812359 + Alu SINE Alu 221 285 -26 405 58 0 0 chr3 59224800 59224852 -158812306 + (TGAA)n Simple_repeat Simple_repeat 3 54 0 1017 224 28 5 chr3 59224852 59225022 -158812136 + L1MB3 LINE L1 5965 6142 -41 1761 189 3 3 chr3 59225022 59225328 -158811830 + AluJo SINE Alu 1 306 -6 1017 224 28 5 chr3 59225328 59225371 -158811787 + L1MB3 LINE L1 6142 6183 0 878 204 45 0 chr3 59225362 59225582 -158811576 + L1M4 LINE L1 5022 5251 -895 * 1457 123 60 34 chr3 59225607 59225820 -158811338 + MER1A DNA MER1_type 46 264 -265 1221 99 5 42 chr3 59225820 59226012 -158811146 + THE1C LTR MaLR 1 185 -190 2507 62 0 3 chr3 59226638 59226930 -158810228 - AluSc SINE Alu -18 291 1 274 226 0 0 chr3 59227076 59227138 -158810020 + MIR SINE MIR 169 230 -32 2070 118 6 32 chr3 59229111 59229426 -158807732 - AluSx SINE Alu -5 307 1 216 0 0 0 chr3 59229532 59229556 -158807602 + (T)n Simple_repeat Simple_repeat 1 24 0 233 200 0 0 chr3 59229564 59229609 -158807549 + L2 LINE L2 3226 3270 -2 338 256 66 25 chr3 59230242 59230363 -158806795 - L2 LINE L2 0 3272 3147 358 150 0 0 chr3 59230789 59230849 -158806309 - AluSc SINE Alu -1 298 239 270 341 72 22 chr3 59230982 59231120 -158806038 - L2 LINE L2 -1 3271 3127 963 249 54 38 chr3 59231329 59231564 -158805594 + LTR16C LTR ERVL 156 399 -92 1670 234 38 64 chr3 59231564 59231599 -158805559 - LTR40a LTR ERVL 0 519 485 2314 89 10 0 chr3 59231599 59231892 -158805266 - AluSc SINE Alu -13 296 1 1670 234 38 64 chr3 59231892 59232389 -158804769 - LTR40a LTR ERVL -34 485 1 963 249 54 38 chr3 59232389 59232470 -158804688 + LTR16C LTR ERVL 399 477 -14 398 190 43 141 chr3 59232817 59232980 -158804178 + Zaphod DNA AcHobo 69 215 -3816 1081 163 0 0 chr3 59233926 59234098 -158803060 + AluJo SINE Alu 119 290 -22 2258 101 0 0 chr3 59234106 59234394 -158802764 + AluSq SINE Alu 1 288 -25 2180 92 30 23 chr3 59234408 59234713 -158802445 + AluSg SINE Alu 3 309 -1 1805 93 0 0 chr3 59234766 59234991 -158802167 + AluSx SINE Alu 1 225 -87 22 0 0 0 chr3 59235486 59235508 -158801650 + AT_rich Low_complexity Low_complexity 1 22 0 1497 153 0 98 chr3 59236344 59236508 -158800650 - AluJo SINE Alu -18 294 176 2470 72 0 13 chr3 59236508 59236812 -158800346 - AluY SINE Alu -11 300 1 1497 153 0 98 chr3 59236812 59236973 -158800185 - AluJo SINE Alu -136 176 1 328 279 114 23 chr3 59237516 59237778 -158799380 + L1ME4a LINE L1 5835 6120 -1 657 114 0 0 chr3 59238700 59238788 -158798370 + AluS SINE Alu 3 90 -222 222 119 17 34 chr3 59238790 59238849 -158798309 + G-rich Low_complexity Low_complexity 4 61 0 432 161 0 0 chr3 59239202 59239283 -158797875 + (TG)n Simple_repeat Simple_repeat 1 81 0 261 0 0 0 chr3 59241675 59241704 -158795454 + (A)n Simple_repeat Simple_repeat 1 29 0 348 254 100 8 chr3 59241970 59242100 -158795058 + MIR3 SINE MIR 19 160 -48 2226 129 0 10 chr3 59242320 59242629 -158794529 + AluSx SINE Alu 1 306 -6 267 140 0 0 chr3 59242779 59242829 -158794329 + (CA)n Simple_repeat Simple_repeat 2 51 0 211 269 17 76 chr3 59243348 59243467 -158793691 - MIR SINE MIR -90 172 61 285 346 8 8 chr3 59243613 59243743 -158793415 + (CGTG)n Simple_repeat Simple_repeat 1 130 0 397 276 112 0 chr3 59244165 59244281 -158792877 + MIR SINE MIR 28 156 -106 223 333 35 0 chr3 59245486 59245573 -158791585 - L2 LINE L2 -215 3057 2968 1740 172 3 39 chr3 59246138 59246307 -158790851 - AluJo SINE Alu -15 297 142 2163 121 13 19 chr3 59246307 59246614 -158790544 - AluSx SINE Alu -7 305 1 1740 172 3 39 chr3 59246614 59246752 -158790406 - AluJo SINE Alu -170 142 1 2369 90 3 3 chr3 59248244 59248544 -158788614 - AluY SINE Alu -11 300 1 459 63 0 0 chr3 59249241 59249304 -158787854 + (TC)n Simple_repeat Simple_repeat 2 64 0 2445 60 44 0 chr3 59249326 59249624 -158787534 - AluY SINE Alu 0 311 1 664 221 0 26 chr3 59250351 59250505 -158786653 - L1ME2 LINE L1 -9 6155 6006 394 255 214 0 chr3 59250580 59250725 -158786433 - MIR SINE MIR -11 251 76 247 297 51 8 chr3 59250749 59250867 -158786291 + L2 LINE L2 3140 3262 -10 1790 137 6 92 chr3 59250867 59251181 -158785977 - AluJb SINE Alu -20 292 6 410 125 28 0 chr3 59251274 59251346 -158785812 + AluS SINE Alu 2 75 -236 1376 244 3 0 chr3 59251568 59251855 -158785303 - AluSx SINE Alu -17 295 8 2162 127 10 3 chr3 59255090 59255397 -158781761 - AluSg SINE Alu -1 309 1 1609 73 0 55 chr3 59255432 59255651 -158781507 - AluY SINE Alu -11 300 94 1748 77 17 34 chr3 59255654 59255887 -158781271 - AluY SINE Alu -82 229 1 2295 98 7 7 chr3 59255887 59256192 -158780966 - AluSx SINE Alu -7 305 1 2444 87 0 0 chr3 59256212 59256510 -158780648 + AluY SINE Alu 1 298 -13 797 288 108 38 chr3 59257387 59257577 -158779581 + L2 LINE L2 1793 1968 -1346 2229 98 3 3 chr3 59257577 59257872 -158779286 - AluY SINE Alu -16 295 1 797 288 108 38 chr3 59257872 59258098 -158779060 + L2 LINE L2 1968 2238 -1076 13850 83 25 20 chr3 59258221 59258322 -158778836 + Charlie3 DNA MER1_type 679 778 -1928 2253 113 0 3 chr3 59258322 59258614 -158778544 + AluSx SINE Alu 1 291 -21 13850 83 25 20 chr3 59258614 59259847 -158777311 + Charlie3 DNA MER1_type 778 2003 -703 2296 107 0 19 chr3 59259847 59260157 -158777001 - AluSx SINE Alu -7 305 2 2407 107 0 0 chr3 59260158 59260458 -158776700 - AluSx SINE Alu -11 301 2 13850 83 25 20 chr3 59260458 59261138 -158776020 + Charlie3 DNA MER1_type 2002 2706 0 356 141 32 8 chr3 59261147 59261249 -158775909 + L1M LINE L1 5254 5353 -813 478 254 158 24 chr3 59262226 59262391 -158774767 - MIR SINE MIR -17 245 59 378 0 0 0 chr3 59263024 59263066 -158774092 + (TG)n Simple_repeat Simple_repeat 2 43 0 190 262 24 0 chr3 59263837 59263921 -158773237 + (TG)n Simple_repeat Simple_repeat 1 86 0 274 235 66 60 chr3 59264026 59264192 -158772966 + MIR SINE MIR 16 182 -80 269 318 0 0 chr3 59264794 59264857 -158772301 + MIR SINE MIR 85 147 -61 314 305 128 37 chr3 59264893 59265057 -158772101 + L1M4 LINE L1 4976 5154 -992 333 308 28 13 chr3 59265623 59265775 -158771383 - MIR SINE MIR -47 215 62 249 262 24 12 chr3 59266586 59266670 -158770488 + MIR SINE MIR 69 153 -109 311 304 88 0 chr3 59266912 59267037 -158770121 + MIR SINE MIR 45 180 -82 390 21 0 0 chr3 59270005 59270052 -158767106 + (TG)n Simple_repeat Simple_repeat 1 47 0 2447 88 0 3 chr3 59270160 59270467 -158766691 + AluY SINE Alu 1 306 -5 227 263 13 13 chr3 59270467 59270536 -158766622 - MIR SINE MIR -77 131 60 2052 92 82 17 chr3 59272076 59272368 -158764790 - AluSq SINE Alu -2 311 1 245 298 40 16 chr3 59272372 59272496 -158764662 - L1M4 LINE L1 -1956 4190 4064 327 256 8 77 chr3 59275330 59275380 -158761778 + MIR SINE MIR 85 137 -125 1918 149 30 0 chr3 59275380 59275681 -158761477 - AluJb SINE Alu -2 310 1 327 256 8 77 chr3 59275681 59275747 -158761411 + MIR SINE MIR 137 193 -69 1290 266 73 0 chr3 59275910 59276309 -158760849 - Zaphod DNA AcHobo -9 4022 3595 635 240 5 45 chr3 59276312 59276512 -158760646 + AluJo SINE Alu 121 312 0 23 33 0 0 chr3 59278235 59278265 -158758893 + GC_rich Low_complexity Low_complexity 1 30 0 31 76 0 0 chr3 59278480 59278546 -158758612 + GC_rich Low_complexity Low_complexity 1 66 0 227 164 16 0 chr3 59278710 59278771 -158758387 + G-rich Low_complexity Low_complexity 3 64 0 293 299 121 6 chr3 59280048 59280205 -158756953 + MIR SINE MIR 50 224 -38 210 37 0 0 chr3 59280711 59280738 -158756420 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 289 260 10 58 chr3 59281144 59281248 -158755910 - MIR SINE MIR -117 145 47 2262 124 0 6 chr3 59281410 59281724 -158755434 - AluSx SINE Alu 0 312 1 1480 179 69 17 chr3 59281724 59282014 -158755144 - AluJo SINE Alu -6 306 1 1614 147 61 0 chr3 59282016 59282343 -158754815 - L1 LINE L1 -817 5329 4983 27 62 0 0 chr3 59282536 59282584 -158754574 + AT_rich Low_complexity Low_complexity 1 48 0 309 351 83 12 chr3 59283092 59283260 -158753898 - L3 LINE CR1 -82 1495 1316 2167 122 0 0 chr3 59283867 59284146 -158753012 + AluSx SINE Alu 1 279 -33 364 124 0 0 chr3 59284149 59284216 -158752942 - Alu SINE Alu -255 46 1 188 298 0 60 chr3 59284275 59284359 -158752799 - L3 LINE CR1 -571 1006 928 861 117 67 0 chr3 59284978 59285098 -158752060 - FRAM SINE Alu -17 159 32 194 281 47 0 chr3 59285241 59285305 -158751853 - MIR SINE MIR -61 147 81 2277 95 3 3 chr3 59285926 59286220 -158750938 - AluSc SINE Alu -15 294 1 191 298 39 48 chr3 59286244 59286348 -158750810 + L2 LINE L2 3173 3275 -38 265 342 25 8 chr3 59286835 59286955 -158750203 - MIR SINE MIR -29 233 112 540 0 0 0 chr3 59288976 59289036 -158748122 + (CA)n Simple_repeat Simple_repeat 1 60 0 180 272 74 37 chr3 59290742 59290823 -158746335 + L2 LINE L2 2695 2778 -536 456 326 62 42 chr3 59290879 59291235 -158745923 + L2 LINE L2 2923 3285 -28 308 324 28 0 chr3 59291758 59291900 -158745258 + MIR SINE MIR 47 192 -70 187 227 0 0 chr3 59292923 59292967 -158744191 + L2 LINE L2 2922 2965 -349 293 324 214 0 chr3 59294393 59294538 -158742620 - MIR SINE MIR -22 240 65 518 178 0 9 chr3 59295536 59295643 -158741515 + MLT1F LTR MaLR 437 542 0 486 267 22 7 chr3 59295709 59295844 -158741314 - MIR SINE MIR -96 166 30 192 269 58 0 chr3 59296904 59296956 -158740202 + MIR3 SINE MIR 116 170 -38 1751 154 0 0 chr3 59299036 59299311 -158737847 + AluSx SINE Alu 13 288 -20 180 111 0 0 chr3 59299311 59299338 -158737820 + (CACAA)n Simple_repeat Simple_repeat 4 30 0 483 222 103 16 chr3 59299430 59299556 -158737602 + MIR SINE MIR 56 192 -70 196 300 129 0 chr3 59300069 59300139 -158737019 - MIR3 SINE MIR -47 161 83 200 324 57 38 chr3 59300499 59300604 -158736554 + MIR SINE MIR 39 145 -63 563 288 56 6 chr3 59300685 59300845 -158736313 + MIR SINE MIR 80 247 -15 405 220 25 59 chr3 59300828 59300946 -158736212 - MIR SINE MIR -99 163 50 * 365 328 26 9 chr3 59301656 59301772 -158735386 - MIR SINE MIR -61 147 30 277 350 102 21 chr3 59301906 59302092 -158735066 + MIR SINE MIR 41 241 -21 252 288 93 30 chr3 59302654 59302809 -158734349 + MIR SINE MIR 10 172 -65 22 56 0 0 chr3 59305356 59305392 -158731766 + GC_rich Low_complexity Low_complexity 1 36 0 245 291 258 19 chr3 59307400 59307671 -158729487 + L2 LINE L2 2935 3270 -2 188 276 73 49 chr3 59307869 59307992 -158729166 - MIR SINE MIR -60 148 20 441 173 25 0 chr3 59310667 59310748 -158726410 - MIR SINE MIR -3 259 177 382 282 77 24 chr3 59311447 59311617 -158725541 - MIR SINE MIR -65 197 19 364 339 74 26 chr3 59312215 59312404 -158724754 - MIR SINE MIR -18 244 47 368 309 138 0 chr3 59312687 59312875 -158724283 + MIR SINE MIR 36 249 -13 221 307 57 51 chr3 59313356 59313438 -158723720 - L2 LINE L2 -208 3064 2984 2378 82 3 13 chr3 59313438 59313753 -158723405 + AluSx SINE Alu 1 312 0 221 307 57 51 chr3 59313753 59313846 -158723312 - L2 LINE L2 -288 2984 2888 191 228 88 18 chr3 59314741 59314798 -158722360 - MIR SINE MIR -95 113 53 271 200 213 0 chr3 59315103 59315178 -158721980 - MIR3 SINE MIR -5 203 113 2420 81 0 3 chr3 59317087 59317396 -158719762 + AluY SINE Alu 1 308 -3 355 328 78 25 chr3 59317415 59317619 -158719539 + MIR SINE MIR 15 229 -33 2328 83 0 0 chr3 59318763 59319052 -158718106 - AluSg SINE Alu -15 295 7 807 161 0 0 chr3 59319344 59319468 -158717690 + FLAM_A SINE Alu 10 133 -9 180 0 0 0 chr3 59320171 59320191 -158716967 + (CCCCAG)n Simple_repeat Simple_repeat 3 22 0 298 352 103 23 chr3 59321286 59321587 -158715571 + L2 LINE L2 2948 3272 0 1989 144 0 0 chr3 59321948 59322247 -158714911 + AluSx SINE Alu 4 302 -10 438 329 37 62 chr3 59323142 59323385 -158713773 + MIR SINE MIR 23 259 -3 236 339 0 37 chr3 59324000 59324109 -158713049 + MIR SINE MIR 43 147 -61 235 300 130 20 chr3 59324903 59325003 -158712155 + MIR SINE MIR 20 130 -78 2291 84 10 0 chr3 59325306 59325616 -158711542 + AluSq SINE Alu 1 313 0 2160 95 0 23 chr3 59326691 59326997 -158710161 - AluSg SINE Alu -11 299 1 200 227 0 0 chr3 59327012 59327056 -158710102 + MIR SINE MIR 78 121 -87 271 305 71 16 chr3 59327364 59327528 -158709630 - MIR SINE MIR -25 237 63 192 143 214 0 chr3 59328318 59328360 -158708798 + L2 LINE L2 3222 3272 0 197 210 242 0 chr3 59328407 59328469 -158708689 + MIR3 SINE MIR 79 155 -53 188 314 100 0 chr3 59329471 59329541 -158707617 + MIR SINE MIR 77 153 -55 2318 93 6 3 chr3 59331998 59332309 -158704849 + AluSp SINE Alu 1 312 -1 260 350 10 0 chr3 59333158 59333258 -158703900 + MIR SINE MIR 162 262 0 1799 152 3 33 chr3 59333264 59333566 -158703592 - AluSx SINE Alu -19 293 1 375 259 18 45 chr3 59333655 59333767 -158703391 - MIR SINE MIR -62 200 92 268 292 52 21 chr3 59335358 59335454 -158701704 - L2 LINE L2 -189 3083 2985 279 320 87 48 chr3 59335897 59336128 -158701030 + MIR SINE MIR 11 250 -12 372 263 45 53 chr3 59336134 59336267 -158700891 - MIR3 SINE MIR -64 144 13 499 289 31 13 chr3 59339274 59339433 -158697725 + MIR SINE MIR 22 183 -79 184 268 0 0 chr3 59340017 59340058 -158697100 - MIR3 SINE MIR -51 157 117 219 264 50 71 chr3 59340526 59340666 -158696492 + L2 LINE L2 2916 3052 -220 2095 174 112 47 chr3 59341191 59341663 -158695495 + MLT1D LTR MaLR 3 505 0 418 181 26 52 chr3 59341663 59341779 -158695379 + MLT1D-int LTR MaLR 1 113 -1258 185 270 16 16 chr3 59342106 59342169 -158694989 + MIR SINE MIR 83 145 -63 210 171 0 0 chr3 59343532 59343567 -158693591 - MIR SINE MIR -115 147 113 444 183 0 65 chr3 59343763 59343856 -158693302 - AluJo SINE Alu -141 171 85 214 307 30 24 chr3 59343867 59343949 -158693209 - MIR SINE MIR -49 159 74 301 389 124 0 chr3 59344251 59344444 -158692714 - MIR SINE MIR -43 219 3 358 333 7 20 chr3 59345780 59345930 -158691228 + L2 LINE L2 2915 3062 -210 38 39 0 0 chr3 59346418 59346470 -158690688 + GC_rich Low_complexity Low_complexity 1 52 0 24 32 0 0 chr3 59346514 59346545 -158690613 + GC_rich Low_complexity Low_complexity 1 31 0 244 289 21 10 chr3 59346864 59346961 -158690197 - L2 LINE L2 -5 3267 3170 385 312 83 0 chr3 59347104 59347261 -158689897 + MIR SINE MIR 83 252 -10 248 210 244 34 chr3 59347663 59347782 -158689376 + MIR SINE MIR 47 190 -72 366 229 39 59 chr3 59347962 59348115 -158689043 - MIR SINE MIR -80 182 33 191 245 0 0 chr3 59350821 59350870 -158686288 + L2 LINE L2 2919 2967 -305 441 268 123 6 chr3 59350883 59351062 -158686096 - MLT1K LTR MaLR -26 562 363 260 275 29 0 chr3 59351132 59351201 -158685957 - MLT1K LTR MaLR -363 225 155 260 241 51 38 chr3 59351363 59351442 -158685716 + L2 LINE L2 3138 3217 -55 207 260 164 14 chr3 59351456 59351529 -158685629 - MIR SINE MIR -60 148 65 189 328 101 51 chr3 59351777 59352152 -158685006 + L2 LINE L2 2879 3272 0 204 135 0 0 chr3 59352877 59352914 -158684244 + (CA)n Simple_repeat Simple_repeat 1 37 0 189 74 0 0 chr3 59352984 59353011 -158684147 + (CA)n Simple_repeat Simple_repeat 1 27 0 288 324 0 0 chr3 59353897 59353999 -158683159 - MIR SINE MIR -117 145 44 1122 235 59 40 chr3 59354144 59354170 -158682988 + MER39 LTR ERV1 1 25 -682 2324 81 13 0 chr3 59354170 59354478 -158682680 + AluSp SINE Alu 1 312 -1 1122 235 59 40 chr3 59354478 59355009 -158682149 + MER39 LTR ERV1 25 704 -3 272 248 64 9 chr3 59355348 59355457 -158681701 + GA-rich Low_complexity Low_complexity 4 118 0 215 185 0 19 chr3 59355470 59355524 -158681634 + GA-rich Low_complexity Low_complexity 1 53 0 228 368 37 15 chr3 59356369 59356505 -158680653 + L2 LINE L2 3133 3271 -1 204 270 178 50 chr3 59357185 59357426 -158679732 + L2 LINE L2 2827 3098 -215 1640 196 0 16 chr3 59359273 59359589 -158677569 + AluJb SINE Alu 1 311 -1 320 318 91 25 chr3 59359855 59360141 -158677017 + L1MC4a LINE L1 4865 5169 -977 2157 116 0 0 chr3 59360156 59360457 -158676701 + AluSg SINE Alu 1 301 -9 1050 264 140 18 chr3 59360497 59361005 -158676153 + L1MC4a LINE L1 5260 5829 -1979 350 292 83 7 chr3 59361130 59361274 -158675884 + LTR33 LTR ERVL 58 212 -309 233 341 24 0 chr3 59361289 59361374 -158675784 + L2 LINE L2 2692 2778 -536 2188 110 0 7 chr3 59361397 59361705 -158675453 - AluSx SINE Alu -6 306 1 257 250 17 0 chr3 59364296 59364356 -158672802 - L2 LINE L2 -2 3311 3251 239 0 0 31 chr3 59364370 59364402 -158672756 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 739 196 40 7 chr3 59364443 59364540 -158672618 - AluJb SINE Alu -92 220 115 234 0 0 0 chr3 59364540 59364566 -158672592 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 739 196 40 7 chr3 59364566 59364616 -158672542 - AluJb SINE Alu -197 115 68 396 248 155 16 chr3 59364650 59364779 -158672379 - MIR SINE MIR -63 199 53 204 219 0 0 chr3 59365295 59365336 -158671822 + MIR SINE MIR 82 122 -86 246 208 281 0 chr3 59366025 59366121 -158671037 - L2 LINE L2 0 3272 3150 299 313 153 0 chr3 59367041 59367172 -158669986 + MIR SINE MIR 44 194 -68 554 264 76 0 chr3 59367528 59367672 -158669486 + MER96 DNA MER1_type? 21 175 0 195 320 190 10 chr3 59368769 59368869 -158668289 + MIR SINE MIR 80 197 -65 197 391 27 18 chr3 59369836 59369946 -158667212 - MIR SINE MIR -63 145 35 215 261 210 22 chr3 59372113 59372251 -158664907 + L2 LINE L2 3146 3309 -4 432 0 0 0 chr3 59372528 59372576 -158664582 + (TG)n Simple_repeat Simple_repeat 2 49 0 391 129 16 0 chr3 59373443 59373505 -158663653 + MER81 DNA DNA 52 114 0 193 146 24 0 chr3 59375967 59376008 -158661150 + L2 LINE L2 3200 3241 -31 227 326 135 0 chr3 59376088 59376177 -158660981 - MIR SINE MIR -90 118 18 192 289 67 11 chr3 59376576 59376666 -158660492 - MIR SINE MIR -69 139 45 2316 83 0 0 chr3 59377859 59378149 -158659009 - AluSg SINE Alu -14 296 7 800 161 0 0 chr3 59378437 59378561 -158658597 + FLAM_A SINE Alu 10 133 -9 11765 216 80 36 chr3 59380173 59380956 -158656202 - L1MA4 LINE L1 -211 6791 6044 1779 136 46 0 chr3 59380956 59381236 -158655922 - AluJo SINE Alu -5 307 15 11765 216 80 36 chr3 59381236 59382187 -158654971 - L1MA4 LINE L1 -958 6044 5137 2009 129 0 16 chr3 59382187 59382490 -158654668 - AluSx SINE Alu -14 298 1 11765 216 80 36 chr3 59382490 59384446 -158652712 - L1MA4 LINE L1 -1865 5137 3269 2097 122 0 10 chr3 59384446 59384750 -158652408 - AluSx SINE Alu -11 301 1 11765 216 80 36 chr3 59384750 59385055 -158652103 - L1MA4 LINE L1 -3733 3269 2979 1684 122 36 137 chr3 59385055 59385230 -158651928 + THE1C LTR MaLR 1 192 -183 2116 118 0 3 chr3 59385230 59385534 -158651624 - AluSg SINE Alu -3 307 5 1684 122 36 137 chr3 59385534 59385571 -158651587 + THE1C LTR MaLR 192 231 -144 1988 145 0 3 chr3 59385571 59385867 -158651291 + AluSx SINE Alu 1 295 -17 1684 122 36 137 chr3 59385867 59386070 -158651088 + THE1C LTR MaLR 231 375 0 11765 216 80 36 chr3 59386070 59386649 -158650509 - L1MA4 LINE L1 -4023 2979 2038 1971 144 46 30 chr3 59386657 59387036 -158650122 + MSTA LTR MaLR 10 388 -40 1403 139 0 5 chr3 59387060 59387275 -158649883 + AluSg/x SINE Alu 84 297 -15 296 176 0 0 chr3 59387275 59387326 -158649832 + MSTA LTR MaLR 378 428 0 3240 267 90 63 chr3 59387326 59388788 -158648370 - L1MA4 LINE L1 -5342 1507 6 1537 242 20 39 chr3 59388955 59389363 -158647795 - L1M4 LINE L1 -1737 4409 4010 2164 115 0 0 chr3 59389363 59389659 -158647499 + AluSq SINE Alu 1 296 -17 1537 242 20 39 chr3 59389659 59389737 -158647421 - L1M4 LINE L1 -2136 4010 3932 609 233 8 8 chr3 59389738 59389867 -158647291 + FLAM_A SINE Alu 1 129 -4 4812 128 72 10 chr3 59389867 59390933 -158646225 + L1PB1 LINE L1 5020 6150 -1 2837 241 89 36 chr3 59390955 59391084 -158646074 - L1M4 LINE L1 -2234 3912 3791 2350 74 0 3 chr3 59391084 59391380 -158645778 - AluY SINE Alu -16 295 1 2837 241 89 36 chr3 59391380 59392156 -158645002 - L1M4 LINE L1 -2355 3791 2924 2138 120 0 0 chr3 59392156 59392456 -158644702 - AluSx SINE Alu -12 300 1 2837 241 89 36 chr3 59392456 59392765 -158644393 - L1M4 LINE L1 -3222 2924 2633 530 317 98 7 chr3 59392820 59393107 -158644051 - Charlie2 DNA MER1_type -2463 319 7 28 0 0 0 chr3 59393451 59393479 -158643679 + AT_rich Low_complexity Low_complexity 1 28 0 749 243 23 23 chr3 59393801 59393974 -158643184 - FAM SINE Alu -2 173 1 610 311 56 79 chr3 59394263 59394298 -158642860 + L2 LINE L2 2810 2844 -428 1302 164 184 8 chr3 59394298 59394554 -158642604 - AluJo SINE Alu 0 302 2 610 311 56 79 chr3 59394554 59394985 -158642173 + L2 LINE L2 2844 3265 -7 211 278 23 139 chr3 59395006 59395084 -158642074 - L2 LINE L2 -202 3070 2985 1948 154 0 10 chr3 59395084 59395390 -158641768 + AluJb SINE Alu 1 303 -9 211 278 23 139 chr3 59395390 59395613 -158641545 - L2 LINE L2 -287 2985 2804 2341 82 0 13 chr3 59396064 59396379 -158640779 + AluY SINE Alu 1 311 0 37 0 0 0 chr3 59396379 59396416 -158640742 + AT_rich Low_complexity Low_complexity 1 37 0 720 278 34 39 chr3 59396716 59397097 -158640061 - L1MC4a LINE L1 -1803 6241 5863 375 292 78 68 chr3 59397141 59397360 -158639798 - L1MC4a LINE L1 -1672 4710 4490 2123 117 0 16 chr3 59397434 59397743 -158639415 - AluSx SINE Alu -8 304 1 510 320 148 28 chr3 59397842 59398567 -158638591 - HAL1b LINE L1 -442 906 95 2387 77 3 3 chr3 59398591 59398902 -158638256 - AluY SINE Alu 0 311 1 575 320 63 18 chr3 59398905 59399147 -158638011 - L1MC4a LINE L1 -4900 1472 1091 280 148 0 0 chr3 59399803 59399857 -158637301 - L1MEc LINE L1 -5241 1155 1102 324 333 82 13 chr3 59400087 59400246 -158636912 - MIR SINE MIR -41 221 52 190 310 17 0 chr3 59400521 59400579 -158636579 + MIR3 SINE MIR 102 160 -48 21 0 0 0 chr3 59403193 59403214 -158633944 + AT_rich Low_complexity Low_complexity 1 21 0 221 303 71 0 chr3 59404239 59404338 -158632820 - MIR SINE MIR -66 142 37 279 119 0 0 chr3 59404458 59404500 -158632658 - 5S rRNA rRNA -79 42 1 395 264 17 10 chr3 59405182 59405314 -158631844 - MIR SINE MIR -63 145 10 1968 130 44 0 chr3 59405753 59406046 -158631112 - AluSx SINE Alu -6 306 1 193 286 53 111 chr3 59407468 59407657 -158629501 + MIR3 SINE MIR 10 187 -21 7891 56 12 0 chr3 59408213 59409170 -158627988 - LTR5 LTR ERVK 0 969 1 950 340 26 8 chr3 59409325 59409702 -158627456 + MLT1I LTR MaLR 25 408 -1 221 348 70 9 chr3 59410811 59410926 -158626232 - MIR3 SINE MIR -49 159 38 216 0 0 0 chr3 59410997 59411021 -158626137 + (A)n Simple_repeat Simple_repeat 1 24 0 209 301 43 32 chr3 59411821 59411914 -158625244 + MIR3 SINE MIR 104 197 -11 309 304 0 0 chr3 59413193 59413272 -158623886 + G-rich Low_complexity Low_complexity 4 82 0 183 328 17 0 chr3 59413618 59413676 -158623482 - MIR SINE MIR -61 147 89 249 302 0 75 chr3 59414418 59414524 -158622634 - MIR SINE MIR -80 182 85 382 309 53 40 chr3 59415288 59415440 -158621718 + MIR SINE MIR 35 188 -74 2374 83 3 0 chr3 59416018 59416320 -158620838 - AluSp SINE Alu -10 303 1 258 272 127 35 chr3 59417149 59417262 -158619896 + MIR SINE MIR 23 150 -58 244 279 16 0 chr3 59418834 59418895 -158618263 + MIR SINE MIR 91 152 -110 313 240 117 52 chr3 59419491 59419645 -158617513 + MIR3 SINE MIR 8 171 -37 325 269 51 51 chr3 59420060 59420216 -158616942 + L2 LINE L2 2909 3064 -208 290 280 23 31 chr3 59420616 59420737 -158616421 + MIR SINE MIR 29 150 -58 196 332 126 58 chr3 59421447 59421637 -158615521 - MIR SINE MIR -14 248 46 1949 137 0 44 chr3 59421691 59422012 -158615146 - AluSx SINE Alu -5 307 1 2117 118 0 0 chr3 59422133 59422422 -158614736 + AluSc SINE Alu 1 289 -20 241 308 76 60 chr3 59422482 59422667 -158614491 - L2 LINE L2 -165 3107 2920 233 340 113 0 chr3 59424649 59424755 -158612403 + L3 LINE CR1 1352 1469 -108 201 243 16 87 chr3 59425145 59425330 -158611828 + G-rich Low_complexity Low_complexity 1 172 0 198 0 0 0 chr3 59427227 59427249 -158609909 + (CCG)n Simple_repeat Simple_repeat 2 23 0 247 304 17 9 chr3 59427348 59427463 -158609695 + C-rich Low_complexity Low_complexity 1 116 0 259 299 52 0 chr3 59431740 59431841 -158605317 - MIR SINE MIR -65 143 45 254 232 0 0 chr3 59433396 59433452 -158603706 + MIR SINE MIR 75 130 -78 349 240 25 58 chr3 59433911 59434032 -158603126 + MIR SINE MIR 63 179 -83 209 396 30 0 chr3 59434253 59434422 -158602736 + (CATG)n Simple_repeat Simple_repeat 1 174 0 * 258 406 0 6 chr3 59434297 59434472 -158602686 + (TG)n Simple_repeat Simple_repeat 1 174 0 191 300 29 14 chr3 59434937 59435007 -158602151 + MIR SINE MIR 78 148 -60 1828 146 4 4 chr3 59435740 59436020 -158601138 + AluJb SINE Alu 1 280 -32 212 0 36 0 chr3 59436024 59436052 -158601106 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 854 248 81 0 chr3 59437226 59437484 -158599674 - MLT1L LTR MaLR -227 388 110 393 297 122 7 chr3 59437712 59437860 -158599298 - MIR SINE MIR -94 168 4 255 313 102 0 chr3 59438133 59438261 -158598897 - MIR3 SINE MIR -20 188 48 251 375 111 28 chr3 59439759 59440012 -158597146 + L2 LINE L2 2990 3263 -9 205 301 27 27 chr3 59440270 59440343 -158596815 + MER5B DNA MER1_type 101 173 -5 183 195 73 0 chr3 59440754 59440795 -158596363 - L2 LINE L2 -93 3179 3136 330 75 0 0 chr3 59441059 59441099 -158596059 + (CCCCAG)n Simple_repeat Simple_repeat 3 42 0 206 232 110 37 chr3 59441529 59441611 -158595547 + MIR SINE MIR 101 188 -74 242 325 0 12 chr3 59441612 59441692 -158595466 - L2 LINE L2 0 3272 3194 2288 88 0 3 chr3 59441717 59442025 -158595133 + AluY SINE Alu 1 307 -4 222 37 0 0 chr3 59442321 59442348 -158594810 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 266 308 173 45 chr3 59442550 59442862 -158594296 + L2 LINE L2 2921 3272 0 269 346 109 0 chr3 59443567 59443668 -158593490 + MIR SINE MIR 38 149 -113 22 56 0 0 chr3 59495799 59495835 -158541323 + GC_rich Low_complexity Low_complexity 1 36 0 492 254 158 24 chr3 59497582 59497747 -158539411 - MIR SINE MIR -17 245 59 396 0 0 0 chr3 59498380 59498424 -158538734 + (TG)n Simple_repeat Simple_repeat 2 45 0 190 262 24 0 chr3 59499195 59499279 -158537879 + (TG)n Simple_repeat Simple_repeat 1 86 0 352 295 76 45 chr3 59499384 59499608 -158537550 + MIR SINE MIR 16 246 -16 277 318 0 0 chr3 59500152 59500215 -158536943 + MIR SINE MIR 85 147 -61 383 373 71 31 chr3 59500251 59500476 -158536682 + L1M4 LINE L1 4976 5209 -937 201 180 0 0 chr3 59500959 59501009 -158536149 + G-rich Low_complexity Low_complexity 1 50 0 319 389 56 0 chr3 59501731 59501893 -158535265 - MIR SINE MIR -29 233 63 2403 62 0 3 chr3 59502577 59502869 -158534289 - AluSc SINE Alu -18 291 1 322 321 121 0 chr3 59502937 59503077 -158534081 + MIR SINE MIR 74 230 -32 1821 169 3 28 chr3 59505056 59505194 -158531964 + AluJo SINE Alu 1 141 -171 2062 121 13 19 chr3 59505194 59505501 -158531657 + AluSx SINE Alu 1 305 -7 1821 169 3 28 chr3 59505501 59505681 -158531477 + AluJo SINE Alu 141 311 -1 300 321 37 22 chr3 59506234 59506368 -158530790 + L2 LINE L2 2968 3103 -169 181 224 69 17 chr3 59506392 59506450 -158530708 + L2 LINE L2 3210 3270 -2 428 294 103 0 chr3 59507525 59507651 -158529507 - MIR SINE MIR -106 156 18 189 349 28 9 chr3 59508023 59508129 -158529029 - L2 LINE L2 -202 3070 2963 387 171 0 0 chr3 59508130 59508206 -158528952 + (TG)n Simple_repeat Simple_repeat 1 76 0 326 297 93 0 chr3 59510615 59510733 -158526425 - MIR SINE MIR -63 145 17 2068 116 31 0 chr3 59510792 59511085 -158526073 + AluSq SINE Alu 1 302 -11 228 259 49 0 chr3 59512704 59512776 -158524382 - MIR SINE MIR -63 145 70 391 339 29 3 chr3 59513309 59513496 -158523662 - MIR SINE MIR -8 254 62 298 300 143 7 chr3 59514307 59514447 -158522711 + MIR SINE MIR 69 227 -35 375 321 43 25 chr3 59514608 59514807 -158522351 + MIR SINE MIR 26 230 -32 190 280 6 159 chr3 59517070 59517227 -158519931 - L2 LINE L2 -16 3256 3124 332 325 13 6 chr3 59517228 59517385 -158519773 + (CA)n Simple_repeat Simple_repeat 1 158 0 285 351 6 58 chr3 59517531 59517702 -158519456 + MIR SINE MIR 61 222 -40 267 140 0 0 chr3 59518168 59518218 -158518940 + (TG)n Simple_repeat Simple_repeat 2 51 0 2195 126 0 7 chr3 59518366 59518676 -158518482 - AluSx SINE Alu -4 308 1 415 261 100 8 chr3 59518896 59519026 -158518132 - MIR3 SINE MIR -48 160 19 2244 114 3 0 chr3 59519290 59519598 -158517560 - AluSg SINE Alu -1 309 1 1697 140 6 92 chr3 59519690 59520004 -158517154 + AluJb SINE Alu 6 292 -20 292 297 51 8 chr3 59520004 59520122 -158517036 - L2 LINE L2 -10 3262 3140 411 255 214 0 chr3 59520146 59520291 -158516867 + MIR SINE MIR 76 251 -11 627 232 0 19 chr3 59520365 59520520 -158516638 + L1ME2 LINE L1 6004 6155 -9 2314 64 44 0 chr3 59521247 59521545 -158515613 + AluY SINE Alu 1 311 0 369 75 0 0 chr3 59521567 59521620 -158515538 + (GA)n Simple_repeat Simple_repeat 2 54 0 275 369 15 48 chr3 59521627 59521833 -158515325 - L2 LINE L2 -247 3025 2827 252 288 93 30 chr3 59523041 59523196 -158513962 - MIR SINE MIR -65 143 10 277 350 102 21 chr3 59523758 59523944 -158513214 - MIR SINE MIR -21 241 41 365 328 26 9 chr3 59524078 59524194 -158512964 + MIR SINE MIR 30 147 -61 405 220 25 59 chr3 59524900 59525018 -158512140 + MIR SINE MIR 50 163 -99 399 302 70 8 chr3 59525001 59525130 -158512028 - MIR SINE MIR -15 247 111 * 349 255 137 10 chr3 59525195 59525297 -158511861 - MIR SINE MIR -63 145 31 1061 177 0 0 chr3 59526337 59526518 -158510640 + AluJo SINE Alu 113 293 -19 2185 108 0 0 chr3 59526523 59526820 -158510338 + AluSq SINE Alu 1 297 -16 2105 91 29 23 chr3 59526822 59527129 -158510029 + AluSg SINE Alu 1 309 -1 213 271 14 14 chr3 59527135 59527182 -158509976 + GA-rich Low_complexity Low_complexity 3 52 -20 2161 117 7 0 chr3 59527182 59527482 -158509676 + AluSx SINE Alu 1 302 -10 213 271 14 14 chr3 59527482 59527504 -158509654 + GA-rich Low_complexity Low_complexity 51 72 0 480 18 0 0 chr3 59528574 59528631 -158508527 + (TG)n Simple_repeat Simple_repeat 1 57 0 225 244 8 122 chr3 59528674 59528739 -158508419 - MIR3 SINE MIR -33 175 131 2332 93 0 3 chr3 59528739 59529050 -158508108 + AluY SINE Alu 1 310 -1 225 244 8 122 chr3 59529050 59529115 -158508043 - MIR3 SINE MIR -77 131 60 513 343 56 49 chr3 59530495 59530652 -158506506 - L1M4 LINE L1 -1795 4351 4190 1944 96 82 17 chr3 59530652 59530945 -158506213 - AluSq SINE Alu -1 312 1 513 343 56 49 chr3 59530945 59531073 -158506085 - L1M4 LINE L1 -1956 4190 4064 366 294 105 28 chr3 59531208 59531351 -158505807 - L2 LINE L2 -1 3271 3118 970 243 50 35 chr3 59531551 59531786 -158505372 + LTR16C LTR ERVL 156 399 -92 1823 234 38 64 chr3 59531786 59531821 -158505337 - LTR40a LTR ERVL 0 519 485 2283 82 10 0 chr3 59531821 59532115 -158505043 - AluSc SINE Alu -12 297 1 1823 234 38 64 chr3 59532115 59532612 -158504546 - LTR40a LTR ERVL -34 485 1 970 243 50 35 chr3 59532612 59532693 -158504465 + LTR16C LTR ERVL 399 477 -14 328 329 110 14 chr3 59532852 59532998 -158504160 - L1M4 LINE L1 -1104 5042 4883 318 227 18 117 chr3 59533040 59533203 -158503955 + Zaphod DNA AcHobo 69 215 -3816 1897 164 7 10 chr3 59533282 59533592 -158503566 - AluJo SINE Alu -3 309 1 26 88 0 0 chr3 59533620 59533688 -158503470 + AT_rich Low_complexity Low_complexity 1 68 0 1813 176 0 3 chr3 59533760 59534061 -158503097 + AluJo SINE Alu 1 300 -12 1714 189 0 7 chr3 59534065 59534367 -158502791 + AluJb SINE Alu 1 300 -12 24 32 0 0 chr3 59534468 59534499 -158502659 + AT_rich Low_complexity Low_complexity 1 31 0 2250 98 0 3 chr3 59534499 59534794 -158502364 - AluSq SINE Alu -19 294 1 693 240 5 45 chr3 59534798 59534998 -158502160 - AluJo SINE Alu 0 312 121 1263 261 73 0 chr3 59535001 59535400 -158501758 + Zaphod DNA AcHobo 3595 4022 -9 364 243 49 98 chr3 59535563 59535629 -158501529 - MIR SINE MIR -69 193 125 1825 153 30 0 chr3 59535629 59535930 -158501228 + AluJb SINE Alu 1 310 -2 364 243 49 98 chr3 59535930 59536059 -158501099 - MIR SINE MIR -137 125 13 212 330 22 0 chr3 59538707 59538798 -158498360 - L3b LINE CR1 -181 1402 1310 399 21 0 0 chr3 59538975 59539023 -158498135 + (CA)n Simple_repeat Simple_repeat 1 48 0 191 333 116 23 chr3 59540680 59540809 -158496349 + L2 LINE L2 2638 2778 -536 564 371 39 20 chr3 59540865 59541221 -158495937 + L2 LINE L2 2923 3285 -28 372 337 72 0 chr3 59541744 59541925 -158495233 + MIR SINE MIR 47 240 -22 203 295 0 0 chr3 59542892 59542953 -158494205 + L2 LINE L2 2905 2965 -349 188 276 73 49 chr3 59546228 59546351 -158490807 + MIR SINE MIR 20 148 -60 245 291 258 19 chr3 59546549 59546820 -158490338 - L2 LINE L2 -2 3270 2935 1324 100 11 6 chr3 59648247 59648427 -158388731 + AluSc SINE Alu 122 302 -7 22 0 0 0 chr3 59648427 59648449 -158388709 + AT_rich Low_complexity Low_complexity 1 22 0 2204 126 0 3 chr3 59648450 59648760 -158388398 - AluSg SINE Alu 0 310 2 2436 55 0 7 chr3 59648763 59649087 -158388071 - AluY SINE Alu 0 322 1 326 139 153 0 chr3 59649095 59649167 -158387991 - L1MA6 LINE L1 0 6300 6218 4657 129 36 38 chr3 59649168 59650030 -158387128 - L1MA7 LINE L1 -4 6287 5428 701 217 72 7 chr3 59650026 59650178 -158386980 - AluJb SINE Alu -14 298 137 2027 165 0 0 chr3 59650179 59650482 -158386676 - AluSx SINE Alu -9 303 1 1906 132 8 128 chr3 59650484 59650632 -158386526 - L1M2 LINE L1 -781 5365 5201 2563 70 0 3 chr3 59650632 59650944 -158386214 + AluY SINE Alu 1 311 0 1906 132 8 128 chr3 59650944 59651275 -158385883 - L1M2 LINE L1 -945 5201 5012 4086 135 51 37 chr3 59651312 59651938 -158385220 - L1MC1 LINE L1 -82 6251 5612 2306 102 10 3 chr3 59651938 59652243 -158384915 - AluSc SINE Alu -2 307 1 4086 135 51 37 chr3 59652243 59652366 -158384792 - L1MC1 LINE L1 -721 5612 5492 1969 139 36 3 chr3 59652378 59652680 -158384478 - AluSx SINE Alu 0 312 1 1259 155 45 174 chr3 59652680 59652876 -158384282 - L1MC1 LINE L1 -1898 4248 4028 836 174 0 0 chr3 59652876 59653008 -158384150 - FLAM_C SINE Alu 0 133 2 1259 155 45 174 chr3 59653008 59653273 -158383885 - L1MC1 LINE L1 -2118 4028 3847 1612 199 7 26 chr3 59653273 59653579 -158383579 - AluJo SINE Alu -12 300 1 1441 184 31 8 chr3 59653579 59653932 -158383226 - L1MC1 LINE L1 -2850 3296 2936 1613 206 71 3 chr3 59653957 59654268 -158382890 - MER7A DNA MER2_type -14 332 3 875 262 75 4 chr3 59654273 59654552 -158382606 - L1MC1 LINE L1 -3212 2934 2636 2136 120 0 3 chr3 59654712 59655019 -158382139 + AluSx SINE Alu 1 306 0 879 112 8 15 chr3 59655097 59655231 -158381927 - AluSg/x SINE Alu 0 310 178 750 129 14 50 chr3 59655290 59655429 -158381729 + AluJb SINE Alu 168 301 -11 23 0 0 0 chr3 59655623 59655646 -158381512 + AT_rich Low_complexity Low_complexity 1 23 0 2371 105 3 0 chr3 59655679 59655985 -158381173 - AluSp SINE Alu -5 308 2 1925 154 0 7 chr3 59656173 59656465 -158380693 + AluJo SINE Alu 1 290 -22 252 132 0 44 chr3 59656550 59656618 -158380540 + (TTC)n Simple_repeat Simple_repeat 2 66 0 1291 115 0 0 chr3 59656662 59656836 -158380322 - AluSq SINE Alu -13 300 127 2151 106 38 0 chr3 59657012 59657305 -158379853 - AluSx SINE Alu -8 304 1 984 252 97 26 chr3 59657624 59658010 -158379148 - L1ME3A LINE L1 -7 6163 5756 1624 68 0 0 chr3 59658029 59658220 -158378938 + AluY SINE Alu 1 191 -120 1174 109 0 0 chr3 59658220 59658376 -158378782 + AluY SINE Alu 154 309 -2 231 265 29 69 chr3 59658377 59658479 -158378679 - L1ME LINE L1 -367 5803 5706 2244 112 7 0 chr3 59658500 59658796 -158378362 + AluSx SINE Alu 1 298 -14 2615 7 0 0 chr3 59658945 59659222 -158377936 - AluYa5 SINE Alu -2 309 33 796 159 0 0 chr3 59659222 59659348 -158377810 - AluJo/FLAM SINE Alu -172 130 5 1116 149 58 0 chr3 59659529 59659703 -158377455 + AluSg/x SINE Alu 89 272 -38 2329 101 13 0 chr3 59659703 59660010 -158377148 - AluSx SINE Alu -1 311 1 1329 131 0 15 chr3 59660011 59660247 -158376911 - AluSc SINE Alu -15 294 1 195 42 0 0 chr3 59660262 59660286 -158376872 + (A)n Simple_repeat Simple_repeat 1 24 0 1575 139 56 4 chr3 59660289 59660540 -158376618 + AluSx SINE Alu 33 296 -16 2602 182 29 11 chr3 59660951 59661473 -158375685 - L1MB7 LINE L1 -19 6165 5635 274 212 76 42 chr3 59662291 59662409 -158374749 + L2 LINE L2 3184 3305 -8 2353 98 0 0 chr3 59663073 59663378 -158373780 + AluSg SINE Alu 6 310 0 1416 170 8 28 chr3 59663381 59663634 -158373524 + AluJb SINE Alu 25 272 -40 1537 137 7 79 chr3 59663634 59663926 -158373232 + AluJo SINE Alu 36 306 -6 955 240 98 24 chr3 59664191 59664487 -158372671 - MLT1J LTR MaLR 0 511 194 502 131 47 9 chr3 59664487 59664594 -158372564 + L1MA1 LINE L1 5963 6073 -229 5991 47 3 25 chr3 59664594 59665351 -158371807 + L1PA5 LINE L1 5406 6149 -5 1557 82 19 82 chr3 59665351 59665600 -158371558 + L1MA1 LINE L1 6049 6298 -4 641 287 51 10 chr3 59665608 59665803 -158371355 - MLT1J LTR MaLR -302 209 7 2361 87 0 10 chr3 59665813 59666113 -158371045 + AluSc SINE Alu 1 297 -12 34 42 0 0 chr3 59666231 59666279 -158370879 + AT_rich Low_complexity Low_complexity 1 48 0 2378 86 7 0 chr3 59666317 59666618 -158370540 + AluSq SINE Alu 1 303 -10 2190 111 0 0 chr3 59666641 59666929 -158370229 + AluSx SINE Alu 15 302 -10 37 0 0 0 chr3 59667033 59667070 -158370088 + AT_rich Low_complexity Low_complexity 1 37 0 2169 117 13 0 chr3 59667254 59667552 -158369606 - AluSc SINE Alu -7 302 1 211 234 0 0 chr3 59667675 59667722 -158369436 + T-rich Low_complexity Low_complexity 1 47 0 1133 126 0 0 chr3 59667744 59667895 -158369263 - AluSq/x SINE Alu -161 151 1 2387 79 3 0 chr3 59668091 59668382 -158368776 + AluSx SINE Alu 1 292 -20 674 112 0 17 chr3 59668583 59668699 -158368459 + (TCTCC)n Simple_repeat Simple_repeat 2 115 0 1365 111 15 0 chr3 59668734 59668932 -158368226 - MER50 LTR ERV1 -37 697 497 2549 70 0 0 chr3 59669027 59669328 -158367830 + AluY SINE Alu 5 305 -6 2203 106 3 7 chr3 59669389 59669682 -158367476 - AluSg SINE Alu -18 292 1 965 120 8 0 chr3 59669683 59669816 -158367342 - AluSq/x SINE Alu -177 135 2 1935 102 0 19 chr3 59670408 59670674 -158366484 - AluSc SINE Alu -16 293 33 1722 173 0 20 chr3 59670740 59671035 -158366123 + AluJo SINE Alu 1 289 -23 597 221 0 41 chr3 59671303 59671425 -158365733 - FLAM_C SINE Alu -25 118 2 2485 87 0 0 chr3 59671432 59671742 -158365416 - AluSq SINE Alu -1 312 3 2334 93 0 6 chr3 59672172 59672484 -158364674 + AluY SINE Alu 1 310 -1 2090 108 3 29 chr3 59672862 59673168 -158363990 - AluSq SINE Alu -14 299 2 2471 80 0 0 chr3 59673783 59674084 -158363074 + AluY SINE Alu 1 301 -10 411 260 0 0 chr3 59674084 59674207 -158362951 + (TA)n Simple_repeat Simple_repeat 1 123 0 1825 164 42 0 chr3 59674263 59674550 -158362608 - AluJb SINE Alu -13 299 1 211 370 0 20 chr3 59675558 59675658 -158361500 + MIR SINE MIR 42 139 -69 1875 128 0 67 chr3 59676054 59676367 -158360791 + AluJb SINE Alu 1 292 -20 2214 100 3 17 chr3 59676805 59677104 -158360054 + AluSx SINE Alu 1 295 -17 321 169 0 0 chr3 59677128 59677187 -158359971 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 2111 128 0 0 chr3 59677196 59677486 -158359672 - AluSc SINE Alu -19 290 1 1948 122 24 14 chr3 59677486 59677781 -158359377 - AluSx SINE Alu -14 298 1 1717 93 151 0 chr3 59677945 59678203 -158358955 + AluSc SINE Alu 1 297 -2 23 0 0 0 chr3 59678494 59678517 -158358641 + AT_rich Low_complexity Low_complexity 1 23 0 207 299 30 0 chr3 59679034 59679101 -158358057 - L2 LINE L2 -1 3271 3203 904 234 99 0 chr3 59679339 59679561 -158357597 - MIR SINE MIR -1 261 18 2360 99 0 0 chr3 59679604 59679898 -158357260 + AluSg SINE Alu 1 294 -16 2443 89 3 0 chr3 59679901 59680205 -158356953 + AluSp SINE Alu 1 305 -8 376 286 189 0 chr3 59680426 59680611 -158356547 + MIR SINE MIR 43 262 0 2108 121 7 0 chr3 59682415 59682704 -158354454 - AluSx SINE Alu -21 291 1 207 0 0 0 chr3 59682706 59682729 -158354429 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2123 106 0 11 chr3 59682729 59683013 -158354145 - AluSg SINE Alu -29 281 1 693 161 8 8 chr3 59683329 59683459 -158353699 - L1MB4 LINE L1 -2 6178 6049 707 153 0 25 chr3 59683459 59683577 -158353581 - FLAM_A SINE Alu -10 132 18 851 185 12 19 chr3 59683603 59683765 -158353393 - AluJb SINE Alu -7 305 145 3777 172 53 38 chr3 59683765 59684654 -158352504 - L1MB5 LINE L1 -104 6070 5164 1804 152 0 28 chr3 59684676 59684959 -158352199 + AluJb SINE Alu 12 286 -26 2348 103 3 0 chr3 59684967 59685267 -158351891 + AluSp SINE Alu 1 301 -12 1190 173 75 0 chr3 59685311 59685525 -158351633 + L1ME1 LINE L1 5691 5920 -264 446 162 111 39 chr3 59685529 59685675 -158351483 + L1ME1 LINE L1 5986 6131 -35 1974 158 0 0 chr3 59685675 59685972 -158351186 - AluSx SINE Alu -15 297 1 446 162 111 39 chr3 59685972 59685998 -158351160 + L1ME1 LINE L1 6131 6154 -12 761 223 34 4 chr3 59686045 59686226 -158350932 - L1MB5 LINE L1 -1192 4954 4771 795 266 75 54 chr3 59686237 59686568 -158350590 - MLT1I LTR MaLR -28 381 44 396 0 0 0 chr3 59686594 59686638 -158350520 + (TG)n Simple_repeat Simple_repeat 2 45 0 483 210 14 58 chr3 59686674 59686812 -158350346 + MIR SINE MIR 76 207 -55 2473 82 3 0 chr3 59686851 59687154 -158350004 + AluSp SINE Alu 1 304 -9 2059 111 0 36 chr3 59688110 59688416 -158348742 - AluSg SINE Alu -15 295 1 2261 97 10 0 chr3 59688424 59688723 -158348435 - AluY SINE Alu -9 302 1 1947 127 32 7 chr3 59688747 59689031 -158348127 + AluSx SINE Alu 1 291 -21 2572 71 0 0 chr3 59689887 59690195 -158346963 - AluY SINE Alu -3 308 1 2479 78 3 3 chr3 59690906 59691213 -158345945 + AluSq SINE Alu 1 307 -6 2545 53 0 7 chr3 59692236 59692537 -158344621 + AluY SINE Alu 1 299 -12 819 215 0 45 chr3 59693599 59693776 -158343382 + FAM SINE Alu 1 169 -6 2536 65 0 16 chr3 59694069 59694379 -158342779 + AluY SINE Alu 1 305 -6 234 0 0 0 chr3 59695163 59695189 -158341969 + (T)n Simple_repeat Simple_repeat 1 26 0 2466 68 0 3 chr3 59695827 59696123 -158341035 + AluSc SINE Alu 1 295 -14 1743 195 3 0 chr3 59696485 59696793 -158340365 - AluJo SINE Alu 0 312 4 1757 147 48 10 chr3 59696928 59697220 -158339938 + AluJb SINE Alu 1 303 -9 1805 112 4 4 chr3 59697223 59697464 -158339694 + AluSx SINE Alu 2 242 -70 2268 86 10 13 chr3 59697530 59697834 -158339324 - AluSg SINE Alu -7 303 1 1056 139 0 0 chr3 59698107 59698282 -158338876 - AluSg/x SINE Alu 0 308 134 2036 133 17 0 chr3 59698282 59698575 -158338583 - AluY SINE Alu -13 298 1 1990 124 3 3 chr3 59700149 59700431 -158336727 + AluSx SINE Alu 1 282 -30 270 0 0 0 chr3 59700435 59700465 -158336693 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2323 113 7 13 chr3 59700516 59700826 -158336332 + AluSx SINE Alu 1 308 -4 297 293 15 68 chr3 59701001 59701134 -158336024 + MIR3 SINE MIR 11 136 -72 1977 149 17 0 chr3 59702844 59703140 -158334018 + AluJb SINE Alu 1 301 -11 968 203 0 0 chr3 59703158 59703321 -158333837 + FRAM SINE Alu 1 163 -3 2353 106 0 0 chr3 59703689 59703991 -158333167 + AluSg SINE Alu 1 302 -8 236 394 135 25 chr3 59704767 59705130 -158332028 - L2 LINE L2 -339 2975 2573 563 138 16 89 chr3 59705148 59705271 -158331887 + FLAM_C SINE Alu 21 134 -9 2467 94 0 0 chr3 59705418 59705725 -158331433 + AluSg SINE Alu 1 307 -3 2342 116 0 6 chr3 59705740 59706051 -158331107 + AluSx SINE Alu 1 309 -3 313 285 47 29 chr3 59706146 59706318 -158330840 + MER112 DNA MER1_type 4 178 -82 2107 174 55 26 chr3 59706820 59707205 -158329953 - MSTD LTR MaLR 0 396 1 228 282 16 65 chr3 59707222 59707346 -158329812 + L2 LINE L2 2624 2741 -573 2126 74 81 0 chr3 59707461 59707744 -158329414 - AluSx SINE Alu -6 306 1 2211 76 4 0 chr3 59707938 59708202 -158328956 - AluSp SINE Alu -14 299 35 2173 108 3 26 chr3 59708482 59708787 -158328371 + AluSq SINE Alu 1 298 -15 2393 112 0 0 chr3 59709581 59709884 -158327274 - AluSx SINE Alu -9 303 1 2306 81 0 24 chr3 59709918 59710213 -158326945 + AluSg SINE Alu 3 290 -20 2227 102 7 0 chr3 59710220 59710514 -158326644 + AluSx SINE Alu 2 297 -15 1322 98 23 6 chr3 59710936 59711138 -158326020 + AluSq SINE Alu 108 312 0 1866 111 44 0 chr3 59711163 59711415 -158325743 + AluSx SINE Alu 11 273 -39 903 200 0 24 chr3 59711506 59711676 -158325482 + AluJb SINE Alu 129 294 -18 612 269 77 0 chr3 59711783 59711939 -158325219 - MER58A DNA MER1_type -55 169 2 187 314 97 65 chr3 59712526 59712650 -158324508 - L2 LINE L2 -11 3261 3134 2310 105 3 0 chr3 59712723 59713019 -158324139 - AluSc SINE Alu -12 297 1 2009 118 0 7 chr3 59713019 59713298 -158323860 - AluSq SINE Alu -13 300 24 1565 79 82 64 chr3 59713421 59713544 -158323614 - L1PA8 LINE L1 0 6172 6053 2296 93 3 3 chr3 59713544 59713845 -158323313 - AluSc SINE Alu -7 302 2 1565 79 82 64 chr3 59713845 59713988 -158323170 - L1PA8 LINE L1 -119 6053 5901 2212 111 3 3 chr3 59713991 59714298 -158322860 - AluSx SINE Alu -5 307 1 182 61 0 30 chr3 59714307 59714340 -158322818 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2187 70 0 0 chr3 59714342 59714601 -158322557 - AluY SINE Alu -52 259 1 2052 145 0 7 chr3 59714619 59714929 -158322229 - AluSx SINE Alu -4 308 1 2178 102 14 0 chr3 59714954 59715248 -158321910 + AluSp SINE Alu 1 298 -15 2392 76 0 16 chr3 59715260 59715564 -158321594 - AluY SINE Alu -12 299 1 2292 79 7 33 chr3 59715564 59715869 -158321289 - AluSx SINE Alu -15 297 1 1635 189 26 10 chr3 59715869 59716182 -158320976 + LTR32 LTR ERVL 32 349 -122 2383 107 0 0 chr3 59716227 59716536 -158320622 - AluSg SINE Alu -1 309 1 358 164 0 0 chr3 59716562 59716623 -158320535 + LTR32 LTR ERVL 317 377 -94 229 169 62 15 chr3 59716625 59716690 -158320468 - MADE1 DNA Mariner -2 78 11 * 545 150 0 20 chr3 59716666 59716766 -158320392 + LTR32 LTR ERVL 374 471 0 308 253 81 61 chr3 59716851 59716950 -158320208 + L2 LINE L2 3211 3311 -2 6822 54 16 49 chr3 59717262 59718248 -158318910 - SVA Other Other 0 1386 433 1254 60 0 21 chr3 59718265 59718600 -158318558 - SVA Other Other -520 866 665 6000 59 27 56 chr3 59718617 59719498 -158317660 - SVA Other Other -520 866 11 2017 138 3 14 chr3 59719759 59720056 -158317102 + AluJb SINE Alu 1 294 -18 207 246 29 0 chr3 59720364 59720433 -158316725 + (TA)n Simple_repeat Simple_repeat 1 71 0 2279 106 0 0 chr3 59720583 59720885 -158316273 + AluSq SINE Alu 1 302 0 2334 114 0 0 chr3 59720956 59721264 -158315894 - AluSx SINE Alu -4 308 1 2355 94 0 0 chr3 59721269 59721604 -158315554 - AluSg SINE Alu 0 310 1 2603 50 0 3 chr3 59721604 59721902 -158315256 - AluY SINE Alu -13 298 2 1673 151 29 0 chr3 59721912 59722191 -158314967 - AluJo SINE Alu -17 295 9 232 230 27 40 chr3 59724435 59724509 -158312649 + MIR SINE MIR 190 262 0 2053 155 3 3 chr3 59725885 59726195 -158310963 + AluSx SINE Alu 1 310 -2 335 253 101 0 chr3 59726219 59726318 -158310840 - MIR SINE MIR -36 226 118 889 131 0 0 chr3 59726372 59726502 -158310656 + FLAM_C SINE Alu 1 130 -3 410 141 0 0 chr3 59726547 59726618 -158310540 - AluSp/q SINE Alu -7 306 236 968 129 0 0 chr3 59726619 59726751 -158310407 + AluSg/x SINE Alu 165 296 -16 2250 93 10 13 chr3 59726757 59727059 -158310099 + AluY SINE Alu 1 301 -10 735 111 9 9 chr3 59727076 59727184 -158309974 + FLAM_C SINE Alu 21 128 -15 721 139 117 11 chr3 59727575 59727755 -158309403 - MER46B DNA MER2_type -1 235 37 2148 64 79 7 chr3 59727755 59728035 -158309123 - AluY SINE Alu -11 300 1 932 181 93 42 chr3 59728077 59728292 -158308866 - AluJo SINE Alu 0 312 87 777 143 50 7 chr3 59728293 59728433 -158308725 - MER46B DNA MER2_type -215 21 1 2216 118 0 13 chr3 59728514 59728819 -158308339 + AluSx SINE Alu 1 301 -11 200 298 165 33 chr3 59729336 59729457 -158307701 + L2 LINE L2 3133 3269 -3 1770 183 7 0 chr3 59729806 59730091 -158307067 + AluJb SINE Alu 1 287 -25 1580 174 0 53 chr3 59730188 59730487 -158306671 - AluJo SINE Alu -12 300 18 2096 81 0 4 chr3 59730711 59730969 -158306189 + AluY SINE Alu 1 257 -54 1612 120 0 8 chr3 59830969 59831210 -158205948 + AluSx SINE Alu 59 297 -15 2133 152 33 3 chr3 59831210 59831571 -158205587 - LTR32 LTR ERVL -85 386 15 1997 123 33 0 chr3 59831696 59831998 -158205160 + AluSx SINE Alu 1 312 0 2141 121 3 3 chr3 59832832 59833137 -158204021 - AluSq SINE Alu -8 305 1 262 88 0 53 chr3 59836526 59836583 -158200575 + (CGGGG)n Simple_repeat Simple_repeat 1 54 0 2213 68 24 3 chr3 59841091 59841387 -158195771 - AluSp SINE Alu -11 302 1 870 189 7 0 chr3 59841426 59841569 -158195589 + AluJb SINE Alu 79 222 -90 1402 91 0 11 chr3 59841569 59841755 -158195403 - AluSx SINE Alu -128 184 1 189 0 0 0 chr3 59841768 59841789 -158195369 + (CAAT)n Simple_repeat Simple_repeat 2 22 0 201 39 0 0 chr3 59842383 59842409 -158194749 + (TC)n Simple_repeat Simple_repeat 1 26 0 1887 111 18 4 chr3 59843069 59843348 -158193810 - AluSx SINE Alu -15 297 15 2066 119 0 3 chr3 59845677 59845971 -158191187 - AluSx SINE Alu -14 298 6 1076 165 4 81 chr3 59845978 59846214 -158190944 - AluJo SINE Alu -9 303 86 1932 132 6 19 chr3 59847707 59848018 -158189140 + AluSx SINE Alu 1 307 -5 2165 83 0 39 chr3 59848416 59848728 -158188430 - AluY SINE Alu -11 300 1 195 42 0 0 chr3 59848769 59848793 -158188365 + (A)n Simple_repeat Simple_repeat 1 24 0 1300 160 21 71 chr3 59849103 59849177 -158187981 + L1MB7 LINE L1 5871 5947 -237 1510 104 42 29 chr3 59849177 59849418 -158187740 + AluSx SINE Alu 1 244 -68 1300 160 21 71 chr3 59849418 59849624 -158187534 + L1MB7 LINE L1 5947 6137 -47 440 268 62 38 chr3 59849684 59849893 -158187265 + L1ME3 LINE L1 5941 6154 -8 2224 94 3 0 chr3 59850623 59850920 -158186238 - AluSg SINE Alu -12 298 1 22 20 5 0 chr3 59850973 59851030 -158186128 + AT_rich Low_complexity Low_complexity 1 29 0 2242 103 0 0 chr3 59851478 59851788 -158185370 + AluY SINE Alu 1 310 -1 2241 97 0 0 chr3 59852125 59852424 -158184734 - AluSg SINE Alu -11 299 1 2230 116 3 0 chr3 59852866 59853177 -158183981 + AluSq SINE Alu 2 313 0 1818 107 10 45 chr3 59854314 59854428 -158182730 + AluSx SINE Alu 31 147 -165 2106 74 60 20 chr3 59854428 59854727 -158182431 + AluY SINE Alu 1 311 0 1818 107 10 45 chr3 59854727 59854903 -158182255 + AluSx SINE Alu 147 311 -1 850 84 0 0 chr3 59855546 59855653 -158181505 - AluY SINE Alu -137 174 68 1605 158 16 26 chr3 59856184 59856488 -158180670 - AluJo SINE Alu -11 301 1 2171 118 3 0 chr3 59857176 59857481 -158179677 - AluSx SINE Alu -5 307 2 1015 119 0 74 chr3 59860954 59861130 -158176028 - AluSg/x SINE Alu -16 294 132 1908 126 42 0 chr3 59861130 59861415 -158175743 - AluSx SINE Alu -15 297 1 1967 156 0 3 chr3 59861568 59861870 -158175288 - AluJb SINE Alu -11 301 1 1476 205 10 20 chr3 59861972 59862101 -158175057 + AluJo SINE Alu 10 139 -173 2220 98 3 3 chr3 59862101 59862408 -158174750 + AluSc SINE Alu 1 307 -2 1476 205 10 20 chr3 59862408 59862571 -158174587 + AluJo SINE Alu 139 299 -13 1441 93 23 19 chr3 59862721 59862937 -158174221 - AluSg/x SINE Alu -15 297 81 29 28 0 0 chr3 59864676 59864712 -158172446 + GC_rich Low_complexity Low_complexity 1 36 0 271 130 13 65 chr3 59865231 59865308 -158171850 + (CCCCG)n Simple_repeat Simple_repeat 5 77 0 28 48 0 0 chr3 59865379 59865421 -158171737 + GC_rich Low_complexity Low_complexity 1 42 0 313 396 45 24 chr3 59866067 59866355 -158170803 - HAL1 LINE L1 -1232 1275 982 730 137 46 0 chr3 59867235 59867366 -158169792 + Tigger1 DNA MER2_type 3 139 -2279 * 1319 91 19 0 chr3 59867362 59867572 -158169586 + Tigger1 DNA MER2_type 2200 2413 -5 345 289 199 14 chr3 59869511 59869722 -158167436 + L2 LINE L2 2852 3101 -171 207 171 0 0 chr3 59869888 59869923 -158167235 + (TG)n Simple_repeat Simple_repeat 2 36 0 2352 94 0 0 chr3 59870411 59870720 -158166438 - AluY SINE Alu -2 309 1 261 253 63 11 chr3 59870792 59870887 -158166271 + L2 LINE L2 2687 2786 -528 2012 123 0 17 chr3 59870888 59871190 -158165968 + AluSx SINE Alu 1 297 -15 1118 169 0 5 chr3 59871192 59871376 -158165782 + AluJb SINE Alu 126 308 -4 795 290 104 29 chr3 59871404 59871818 -158165340 + L2 LINE L2 2851 3295 -18 250 333 0 31 chr3 59871877 59871973 -158165185 + L3b LINE CR1 1274 1366 -217 2301 100 3 0 chr3 59873951 59874260 -158162898 - AluSg SINE Alu 0 310 1 2123 104 7 3 chr3 59874260 59874558 -158162600 - AluSx SINE Alu -13 299 1 232 313 73 0 chr3 59875887 59875983 -158161175 + L2 LINE L2 2924 3026 -246 2341 92 3 0 chr3 59876015 59876320 -158160838 + AluSp SINE Alu 2 307 -6 2230 89 0 23 chr3 59876666 59876968 -158160190 + AluSc SINE Alu 1 295 -14 2380 70 0 3 chr3 59876970 59877272 -158159886 + AluY SINE Alu 3 303 -8 413 301 132 43 chr3 59877365 59877388 -158159770 + HAL1 LINE L1 880 900 -1607 2130 132 3 0 chr3 59877388 59877698 -158159460 + AluSx SINE Alu 1 311 -1 413 301 132 43 chr3 59877698 59877854 -158159304 + HAL1 LINE L1 900 1041 -1466 2130 101 40 0 chr3 59877854 59878152 -158159006 + AluSx SINE Alu 1 310 -2 413 301 132 43 chr3 59878152 59878390 -158158768 + HAL1 LINE L1 1041 1291 -1216 2237 109 0 3 chr3 59878390 59878702 -158158456 + AluY SINE Alu 1 311 0 413 301 132 43 chr3 59878702 59878716 -158158442 + HAL1 LINE L1 1291 1302 -1205 449 175 21 0 chr3 59878716 59878813 -158158345 + GA-rich Low_complexity Low_complexity 1 99 0 258 336 49 0 chr3 59878936 59879050 -158158108 + MIR SINE MIR 114 233 -29 238 289 39 70 chr3 59879568 59879724 -158157434 - L2 LINE L2 -145 3127 2977 185 292 28 28 chr3 59883877 59883949 -158153209 - L2 LINE L2 -63 3209 3138 233 289 13 26 chr3 59884462 59884538 -158152620 + MIR SINE MIR 79 153 -109 1095 81 0 0 chr3 59887757 59887893 -158149265 + AluSq/x SINE Alu 1 136 -177 2097 122 3 22 chr3 59887893 59888205 -158148953 + AluSq SINE Alu 1 306 -7 315 122 0 0 chr3 59888787 59888836 -158148322 + (TG)n Simple_repeat Simple_repeat 2 50 0 1798 139 23 13 chr3 59888955 59889257 -158147901 + AluJo SINE Alu 5 309 -3 376 186 70 0 chr3 59889882 59889940 -158147218 - LTR32 LTR ERVL 0 471 404 2273 105 0 3 chr3 59889940 59890253 -158146905 + AluSq SINE Alu 1 312 -1 376 186 70 0 chr3 59890253 59890280 -158146878 - LTR32 LTR ERVL -67 404 380 1042 127 0 13 chr3 59890281 59890438 -158146720 + AluSx SINE Alu 1 155 -157 267 342 164 20 chr3 59890743 59890895 -158146263 - MIR SINE MIR -24 238 65 2318 80 3 3 chr3 59891070 59891371 -158145787 - AluY SINE Alu -10 301 1 2140 104 10 10 chr3 59891371 59891678 -158145480 - AluSc SINE Alu -2 307 1 246 392 0 13 chr3 59891726 59891879 -158145279 + (TG)n Simple_repeat Simple_repeat 2 152 0 227 54 27 0 chr3 59893797 59893834 -158143324 + (TA)n Simple_repeat Simple_repeat 2 39 0 1917 170 13 0 chr3 59894558 59894864 -158142294 - AluSx SINE Alu -2 310 1 353 320 68 24 chr3 59897479 59897685 -158139473 + L2 LINE L2 1778 1992 -1322 957 204 25 38 chr3 59899849 59900089 -158137069 + MER63B DNA MER1_type 1 237 -199 1935 139 7 0 chr3 59900089 59900384 -158136774 + AluSx SINE Alu 1 297 -15 2126 114 0 19 chr3 59900384 59900699 -158136459 + AluSc SINE Alu 1 309 0 8108 114 33 45 chr3 59900764 59900921 -158136237 + Tigger1 DNA MER2_type 4 161 -2257 2311 102 0 0 chr3 59900921 59901224 -158135934 - AluSx SINE Alu -9 303 1 8108 114 33 45 chr3 59901224 59901553 -158135605 + Tigger1 DNA MER2_type 161 492 -1926 1762 142 25 44 chr3 59901553 59901871 -158135287 + AluSx SINE Alu 1 312 0 8108 114 33 45 chr3 59901871 59902383 -158134775 + Tigger1 DNA MER2_type 492 1008 -1410 2017 149 0 0 chr3 59902383 59902692 -158134466 + AluSx SINE Alu 1 309 -3 8108 114 33 45 chr3 59902692 59902890 -158134268 + Tigger1 DNA MER2_type 1008 1207 -1211 2347 64 30 3 chr3 59902890 59903188 -158133970 + AluY SINE Alu 5 310 -1 8108 114 33 45 chr3 59903188 59903273 -158133885 + Tigger1 DNA MER2_type 1207 1291 -1127 2233 101 0 3 chr3 59903273 59903570 -158133588 - AluSx SINE Alu -16 296 1 8108 114 33 45 chr3 59903570 59903751 -158133407 + Tigger1 DNA MER2_type 1291 1453 -965 2322 91 0 0 chr3 59903751 59904049 -158133109 - AluSx SINE Alu -14 298 1 922 126 7 0 chr3 59904134 59904269 -158132889 - AluSq/x SINE Alu -177 136 1 323 129 0 0 chr3 59904269 59904331 -158132827 + MER63B DNA MER1_type 331 392 -43 705 241 20 36 chr3 59907392 59907587 -158129571 - MIR SINE MIR -21 241 50 206 213 66 33 chr3 59908244 59908305 -158128853 - MIR3 SINE MIR -34 174 112 1079 165 0 0 chr3 59908337 59908513 -158128645 - AluSg/x SINE Alu 0 312 137 2302 99 0 0 chr3 59908513 59908817 -158128341 - AluSg SINE Alu -6 304 1 233 304 13 13 chr3 59915853 59915932 -158121226 + G-rich Low_complexity Low_complexity 1 79 0 312 337 0 0 chr3 59917096 59917188 -158119970 - MIR SINE MIR -64 198 107 366 303 20 0 chr3 59917265 59917364 -158119794 - MIR SINE MIR -107 155 55 180 0 0 0 chr3 59919877 59919897 -158117261 + (CAGGG)n Simple_repeat Simple_repeat 1 20 0 290 203 0 72 chr3 59920262 59920331 -158116827 + L2 LINE L2 3177 3240 -32 211 261 46 0 chr3 59920364 59920429 -158116729 - L2 LINE L2 -281 2991 2924 281 292 73 0 chr3 59920592 59920688 -158116470 + MIR SINE MIR 39 141 -67 200 333 0 0 chr3 59923026 59923089 -158114069 + L3b LINE CR1 1335 1397 -186 232 197 66 0 chr3 59924385 59924446 -158112712 + GA-rich Low_complexity Low_complexity 1 65 0 324 147 21 21 chr3 59924591 59924686 -158112472 + GA-rich Low_complexity Low_complexity 4 98 0 357 363 155 24 chr3 59924829 59925242 -158111916 - L2 LINE L2 -2 3270 2804 267 292 215 0 chr3 59925979 59926198 -158110960 - L2 LINE L2 -337 2977 2712 2158 81 14 7 chr3 59926199 59926494 -158110664 - AluSx SINE Alu -9 303 7 206 274 17 51 chr3 59927302 59927419 -158109739 + C-rich Low_complexity Low_complexity 5 117 0 2432 35 0 0 chr3 59927870 59928155 -158109003 + AluY SINE Alu 14 298 -13 1900 109 61 17 chr3 59928747 59929041 -158108117 - AluSx SINE Alu -5 307 1 2169 87 11 0 chr3 59929341 59929617 -158107541 - AluSg SINE Alu -31 279 1 1408 291 183 22 chr3 59929664 59930115 -158107043 + L2 LINE L2 1778 2155 -1159 2215 88 10 3 chr3 59930115 59930412 -158106746 - AluSg SINE Alu -11 299 1 1408 291 183 22 chr3 59930412 59930763 -158106395 + L2 LINE L2 2155 2709 -605 1718 167 0 20 chr3 59930770 59931069 -158106089 + AluJo SINE Alu 2 294 -18 580 253 28 72 chr3 59931092 59931341 -158105817 + L2 LINE L2 3076 3313 0 2338 89 0 3 chr3 59931577 59931891 -158105267 - AluSp SINE Alu 0 313 1 1878 143 0 31 chr3 59931897 59932224 -158104934 - AluJb SINE Alu 0 318 1 181 252 96 96 chr3 59934208 59934343 -158102815 + MIR3 SINE MIR 37 171 -37 410 294 124 0 chr3 59935108 59935285 -158101873 + MLT1K LTR MaLR 381 579 -9 341 291 34 43 chr3 59935424 59935581 -158101577 + MIR SINE MIR 13 177 -31 238 272 7 116 chr3 59937546 59937693 -158099465 + MIR SINE MIR 17 147 -115 2166 88 0 7 chr3 59937697 59938013 -158099145 + AluSg SINE Alu 1 314 0 308 145 0 13 chr3 59938864 59938940 -158098218 + (CACCC)n Simple_repeat Simple_repeat 3 77 0 2382 71 6 3 chr3 59942882 59943193 -158093965 + AluSp SINE Alu 2 313 0 336 292 50 37 chr3 59943205 59943366 -158093792 - L2 LINE L2 -213 3059 2897 189 338 50 0 chr3 59943671 59943751 -158093407 + MIR SINE MIR 42 125 -83 2509 58 0 3 chr3 59945090 59945402 -158091756 - AluY SINE Alu 0 311 1 301 271 41 12 chr3 59946020 59946190 -158090968 + (CAGA)n Simple_repeat Simple_repeat 1 175 0 2319 104 0 0 chr3 59946206 59946515 -158090643 + AluSx SINE Alu 1 309 -3 219 214 0 0 chr3 59947107 59947149 -158090009 + L2 LINE L2 3226 3267 -5 1907 173 0 10 chr3 59947151 59947464 -158089694 + AluSx SINE Alu 1 310 -2 39 0 0 0 chr3 59949526 59949565 -158087593 + GC_rich Low_complexity Low_complexity 1 39 0 271 318 94 26 chr3 59951815 59952007 -158085151 + L2 LINE L2 2849 3053 -219 2614 51 0 0 chr3 59954055 59954405 -158082753 - AluY SINE Alu 0 350 1 22 43 0 21 chr3 59954405 59954422 -158082736 + AT_rich Low_complexity Low_complexity 1 17 -29 1784 107 52 0 chr3 59954422 59954693 -158082465 - AluSx SINE Alu -27 285 1 22 43 0 21 chr3 59954693 59954722 -158082436 + AT_rich Low_complexity Low_complexity 17 46 0 2165 99 7 0 chr3 59954800 59955093 -158082065 + AluSp SINE Alu 1 295 -18 1026 135 6 0 chr3 59955226 59955475 -158081683 + L1MB3 LINE L1 5197 5447 -733 1122 147 15 15 chr3 59955475 59955494 -158081664 + AluSg/x SINE Alu 116 134 -178 2363 86 3 0 chr3 59955494 59955795 -158081363 + AluSp SINE Alu 1 302 -11 1122 147 15 15 chr3 59955795 59955972 -158081186 + AluSg/x SINE Alu 133 312 0 3674 174 23 30 chr3 59955951 59956075 -158081083 + L1MB3 LINE L1 5477 5600 -583 2137 112 7 0 chr3 59956075 59956362 -158080796 + AluSx SINE Alu 1 289 -23 2069 104 14 3 chr3 59956364 59956679 -158080479 + AluSp SINE Alu 1 313 0 3674 174 23 30 chr3 59956679 59956695 -158080463 + L1MB3 LINE L1 5601 5616 -567 2230 91 0 19 chr3 59956695 59957004 -158080154 + AluSc SINE Alu 1 303 -6 3674 174 23 30 chr3 59957004 59957555 -158079603 + L1MB3 LINE L1 5616 6167 -16 898 187 41 9 chr3 59957598 59957817 -158079341 + MER96B DNA MER1_type? 192 417 0 31 44 0 0 chr3 59961056 59961101 -158076057 + GC_rich Low_complexity Low_complexity 1 45 0 2318 75 16 7 chr3 59963794 59964099 -158073059 - AluSc SINE Alu -1 308 1 198 318 16 16 chr3 59965626 59965689 -158071469 + L2 LINE L2 3182 3244 -28 249 279 169 6 chr3 59965827 59965999 -158071159 + L2 LINE L2 2820 3019 -253 185 353 47 35 chr3 59966068 59966130 -158071028 + L2 LINE L2 3184 3249 -23 2249 65 0 0 chr3 59966130 59966405 -158070753 - AluY SINE Alu -36 275 1 185 353 47 35 chr3 59966405 59966427 -158070731 + L2 LINE L2 3249 3269 -3 2061 112 26 3 chr3 59966976 59967279 -158069879 - AluSx SINE Alu -2 310 1 352 294 12 0 chr3 59968552 59968637 -158068521 - MIR SINE MIR -100 162 77 267 272 44 81 chr3 59968692 59968758 -158068400 + MER5A DNA MER1_type 7 67 -122 2299 84 0 3 chr3 59968758 59969057 -158068101 + AluSq SINE Alu 2 299 -14 267 272 44 81 chr3 59969057 59969126 -158068032 + MER5A DNA MER1_type 67 137 -52 191 254 0 79 chr3 59969335 59969398 -158067760 + L2 LINE L2 2909 2966 -306 445 338 22 0 chr3 59969642 59969778 -158067380 - MIR SINE MIR -21 241 103 479 158 14 65 chr3 59970107 59970246 -158066912 + L1MB7 LINE L1 5973 6104 -80 212 341 87 0 chr3 59970707 59970833 -158066325 + MIR3 SINE MIR 11 147 -61 2185 84 0 58 chr3 59971605 59971915 -158065243 - AluSx SINE Alu -20 292 1 293 263 161 8 chr3 59972638 59972756 -158064402 + MIR SINE MIR 127 262 0 2359 77 3 0 chr3 59974570 59974870 -158062288 + AluSp SINE Alu 1 301 -12 2466 73 0 0 chr3 59975539 59975842 -158061316 + AluSx SINE Alu 1 303 -9 287 298 12 0 chr3 59976127 59976211 -158060947 + MIR SINE MIR 89 173 -89 2354 99 0 6 chr3 59978919 59979233 -158057925 - AluSx SINE Alu 0 312 1 211 301 135 8 chr3 59979491 59979624 -158057534 + L2 LINE L2 2905 3054 -218 251 294 143 25 chr3 59980323 59980442 -158056716 - L2 LINE L2 -1 3271 3139 183 115 0 66 chr3 59983543 59983604 -158053554 + (CCCGG)n Simple_repeat Simple_repeat 3 59 0 2303 73 0 13 chr3 59984248 59984551 -158052607 + AluSx SINE Alu 1 299 -13 327 242 11 21 chr3 59984696 59984791 -158052367 + GA-rich Low_complexity Low_complexity 4 97 0 2051 114 13 7 chr3 59985215 59985513 -158051645 + AluSp SINE Alu 1 300 -13 2147 75 31 0 chr3 59985513 59985805 -158051353 + AluY SINE Alu 1 303 -8 1196 144 0 0 chr3 59985805 59985978 -158051180 + AluSg/x SINE Alu 132 304 -6 393 335 90 0 chr3 59987091 59987246 -158049912 + L2 LINE L2 2621 2789 -525 586 284 19 34 chr3 59987266 59987517 -158049641 + MIR SINE MIR 16 261 -1 2168 109 3 0 chr3 59987525 59987819 -158049339 - AluSx SINE Alu -17 295 1 971 135 0 0 chr3 59987820 59987953 -158049205 - AluJo/FLAM SINE Alu -169 133 1 2026 115 7 0 chr3 59988293 59988572 -158048586 + AluSc SINE Alu 1 281 -28 219 36 0 0 chr3 59988572 59988600 -158048558 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 202 250 0 0 chr3 59988864 59988908 -158048250 - MIR SINE MIR -56 152 109 1992 133 0 38 chr3 59990881 59991197 -158045961 - AluJb SINE Alu -8 304 1 1966 152 0 13 chr3 59991585 59991895 -158045263 - AluJb SINE Alu -1 311 6 873 147 8 0 chr3 59992664 59992793 -158044365 - FLAM_C SINE Alu -3 130 1 2204 111 3 0 chr3 59992802 59993099 -158044059 - AluSx SINE Alu -14 298 1 2216 105 3 3 chr3 59998438 59998742 -158038416 - AluSx SINE Alu -7 305 2 355 364 8 0 chr3 59998750 59998868 -158038290 - L2 LINE L2 -17 3296 3178 587 253 177 28 chr3 59999886 60000107 -158037051 - MIR SINE MIR -1 261 13 350 320 209 17 chr3 60003855 60004152 -158033006 - L2 LINE L2 0 3272 2919 1659 152 21 28 chr3 60005645 60005774 -158031384 + AluJo SINE Alu 1 129 -183 1749 144 14 11 chr3 60005774 60006058 -158031100 - AluJb SINE Alu -27 285 1 1659 152 21 28 chr3 60006058 60006075 -158031083 + AluJo SINE Alu 129 287 -25 987 148 0 0 chr3 60006075 60006217 -158030941 + FRAM SINE Alu 10 151 -25 21 0 0 0 chr3 60007773 60007794 -158029364 + GC_rich Low_complexity Low_complexity 1 21 0 2319 80 10 0 chr3 60008767 60009069 -158028089 + AluSp SINE Alu 1 305 -8 621 28 0 0 chr3 60014224 60014296 -158022862 - AluSp/q SINE Alu -20 293 222 430 286 118 98 chr3 60014331 60014413 -158022745 - L1ME LINE L1 -424 5697 5618 2047 130 0 3 chr3 60014413 60014720 -158022438 - AluSx SINE Alu -6 306 1 2168 108 0 3 chr3 60014721 60015026 -158022132 - AluSg1 SINE Alu -5 304 1 2267 102 0 0 chr3 60015028 60015323 -158021835 - AluSx SINE Alu -17 295 1 1918 146 0 10 chr3 60015328 60015629 -158021529 - AluJb SINE Alu -14 298 1 430 286 118 98 chr3 60015629 60015851 -158021307 - L1ME LINE L1 -506 5615 5358 2259 103 7 0 chr3 60015851 60016153 -158021005 - AluSx SINE Alu -8 304 1 430 286 118 98 chr3 60016153 60016233 -158020925 - L1ME LINE L1 -763 5358 5281 1933 124 13 13 chr3 60016258 60016427 -158020731 - AluSx SINE Alu -6 306 135 2464 72 0 0 chr3 60016427 60016731 -158020427 - AluY SINE Alu -7 304 1 1933 124 13 13 chr3 60016731 60016867 -158020291 - AluSx SINE Alu -176 136 1 2287 96 0 0 chr3 60016871 60017172 -158019986 - AluSc SINE Alu -8 301 1 1983 146 3 0 chr3 60017172 60017474 -158019684 - AluSx SINE Alu -9 303 1 322 225 29 139 chr3 60017702 60017788 -158019370 + L1ME4a LINE L1 5966 6060 -61 1944 142 0 49 chr3 60017788 60017925 -158019233 + AluJo SINE Alu 1 143 -169 2158 102 0 3 chr3 60017925 60018220 -158018938 + AluY SINE Alu 1 294 -17 1944 142 0 49 chr3 60018220 60018406 -158018752 + AluJo SINE Alu 143 308 -4 2250 96 0 7 chr3 60018415 60018716 -158018442 + AluSg SINE Alu 2 300 -10 2350 63 0 17 chr3 60018717 60019018 -158018140 + AluY SINE Alu 1 296 -15 322 225 29 139 chr3 60019018 60019092 -158018066 + L1ME4a LINE L1 6067 6119 -2 402 128 0 186 chr3 60019132 60019184 -158017974 + AluJ/FLAM SINE Alu 6 32 -280 2504 62 0 0 chr3 60019184 60019490 -158017668 + AluY SINE Alu 1 306 -5 402 128 0 186 chr3 60019490 60019539 -158017619 + AluJ/FLAM SINE Alu 32 88 -224 2003 100 0 0 chr3 60019630 60019889 -158017269 + AluSx SINE Alu 9 267 -45 2310 88 0 0 chr3 60019904 60020198 -158016960 + AluSg1 SINE Alu 1 294 -15 303 325 32 8 chr3 60021529 60021652 -158015506 + MIR SINE MIR 47 172 -90 591 261 167 8 chr3 60021860 60022097 -158015061 + L2 LINE L2 2830 3114 -199 2214 102 0 0 chr3 60022097 60022390 -158014768 - AluSg SINE Alu -17 293 1 591 261 167 8 chr3 60022390 60022416 -158014742 + L2 LINE L2 3114 3135 -178 2308 73 16 0 chr3 60022503 60022806 -158014352 - AluY SINE Alu -3 308 1 24 0 0 0 chr3 60023565 60023589 -158013569 + GC_rich Low_complexity Low_complexity 1 24 0 205 254 190 10 chr3 60024851 60024947 -158012211 - MIR SINE MIR -65 143 34 234 0 0 0 chr3 60027195 60027221 -158009937 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1519 104 154 15 chr3 60027223 60027350 -158009808 - AluSx SINE Alu -12 300 192 2198 117 0 0 chr3 60027350 60027648 -158009510 - AluSx SINE Alu -14 298 1 1519 104 154 15 chr3 60027648 60027780 -158009378 - AluSx SINE Alu -120 192 5 1299 176 86 21 chr3 60027803 60028082 -158009076 - AluJo SINE Alu -15 297 1 274 309 48 59 chr3 60028165 60028472 -158008686 + L2 LINE L2 2914 3216 -56 244 314 7 29 chr3 60031440 60031580 -158005578 + (TG)n Simple_repeat Simple_repeat 1 137 0 510 122 276 10 chr3 60035769 60035867 -158001291 - FLAM_C SINE Alu -19 124 1 1912 124 31 14 chr3 60036083 60036374 -158000784 + AluSx SINE Alu 1 296 -16 2207 89 7 7 chr3 60036375 60036678 -158000480 + AluSq SINE Alu 1 303 -10 243 350 122 24 chr3 60036727 60036850 -158000308 - L2 LINE L2 -4 3309 3175 1927 135 3 7 chr3 60038607 60038896 -157998262 + AluSx SINE Alu 1 288 -24 218 222 37 0 chr3 60044060 60044114 -157993044 + (CCGGG)n Simple_repeat Simple_repeat 5 60 0 23 0 0 0 chr3 60044392 60044415 -157992743 + GC_rich Low_complexity Low_complexity 1 23 0 553 324 23 6 chr3 60046072 60046248 -157990910 - MIR SINE MIR -70 192 14 262 288 50 86 chr3 60048823 60048962 -157988196 - L2 LINE L2 0 3313 3180 1844 124 20 44 chr3 60049242 60049387 -157987771 + AluSx SINE Alu 1 137 -175 2199 96 7 0 chr3 60049387 60049680 -157987478 + AluSg SINE Alu 3 297 -13 1844 124 20 44 chr3 60049680 60049832 -157987326 + AluSx SINE Alu 137 291 -21 1431 142 8 70 chr3 60051079 60051446 -157985712 - MER4A LTR ERV1 0 664 262 281 44 22 22 chr3 60051446 60051491 -157985667 - MER4A LTR ERV1 -566 98 54 1704 118 84 37 chr3 60051529 60051728 -157985430 - MER4A-int LTR ERV1 -5 6593 6368 2200 106 0 3 chr3 60051728 60052030 -157985128 + AluSp SINE Alu 3 303 -10 1704 118 84 37 chr3 60052030 60052185 -157984973 - MER4A-int LTR ERV1 -230 6368 6222 2362 83 0 0 chr3 60052187 60052487 -157984671 + AluSg SINE Alu 1 300 -10 398 20 20 0 chr3 60052509 60052560 -157984598 + (CCCCCT)n Simple_repeat Simple_repeat 5 56 0 5174 81 45 10 chr3 60052560 60053342 -157983816 + SVA Other Other 58 866 -520 1364 102 13 75 chr3 60053366 60053892 -157983266 + SVA Other Other 476 866 -592 6798 57 5 74 chr3 60053905 60054930 -157982228 + SVA Other Other 433 1386 0 2243 83 3 10 chr3 60054959 60055259 -157981899 + AluY SINE Alu 1 298 -13 2292 111 83 77 chr3 60055261 60055739 -157981419 - MER4A-int LTR ERV1 -315 5720 5246 698 124 0 0 chr3 60055739 60055836 -157981322 - AluS SINE Alu -215 97 1 2292 111 83 77 chr3 60055836 60056040 -157981118 - MER4A-int LTR ERV1 -789 5246 5045 2126 123 7 0 chr3 60056040 60056342 -157980816 - AluSx SINE Alu -7 305 2 2292 111 83 77 chr3 60056342 60056495 -157980663 - MER4A-int LTR ERV1 -990 5045 4192 2237 102 0 0 chr3 60056496 60056790 -157980368 + AluSg SINE Alu 1 294 -16 2134 70 44 0 chr3 60056790 60057063 -157980095 + AluY SINE Alu 1 285 -26 1360 66 0 0 chr3 60056896 60057063 -157980095 + AluY SINE Alu 119 311 0 186 0 0 39 chr3 60057063 60057089 -157980069 + (TAA)n Simple_repeat Simple_repeat 2 180 0 2001 144 0 0 chr3 60057098 60057390 -157979768 + AluSx SINE Alu 1 292 -20 327 241 26 26 chr3 60057398 60057430 -157979728 - MER4A-int LTR ERV1 -3278 3320 3289 2331 71 3 3 chr3 60057430 60057726 -157979432 + AluY SINE Alu 1 296 -15 327 241 26 26 chr3 60057726 60057809 -157979349 - MER4A-int LTR ERV1 -3308 3290 3205 2502 56 0 3 chr3 60057820 60058126 -157979032 - AluY SINE Alu -6 305 1 2081 125 16 0 chr3 60058135 60058440 -157978718 - AluSx SINE Alu -2 310 1 1107 136 6 0 chr3 60058442 60058604 -157978554 - AluSg/x SINE Alu -16 294 132 2024 115 3 7 chr3 60058604 60058920 -157978238 - AluSx SINE Alu 0 312 1 2367 117 66 33 chr3 60058953 60059501 -157977657 - MER4A-int LTR ERV1 -5989 609 1 1442 161 3 76 chr3 60059503 60059691 -157977467 - MER4A LTR ERV1 0 664 464 2234 94 0 0 chr3 60059691 60059979 -157977179 + AluSg SINE Alu 1 288 -22 2548 58 0 0 chr3 60059982 60060291 -157976867 + AluY SINE Alu 1 309 -2 1442 161 3 76 chr3 60060291 60060414 -157976744 - MER4A LTR ERV1 -202 462 372 276 83 375 14 chr3 60060475 60060547 -157976611 - MER4A LTR ERV1 -566 98 1 415 153 176 15 chr3 60060845 60060976 -157976182 - ORSL DNA AcHobo 0 275 124 1322 150 0 0 chr3 60060991 60061184 -157975974 - AluJo SINE Alu -97 215 23 378 0 0 0 chr3 60061186 60061228 -157975930 + (TA)n Simple_repeat Simple_repeat 2 43 0 2147 91 3 26 chr3 60061228 60061537 -157975621 - AluY SINE Alu -8 303 2 325 175 25 12 chr3 60061547 60061627 -157975531 - ORSL DNA AcHobo -191 84 4 2395 60 7 3 chr3 60063552 60063854 -157973304 - AluY SINE Alu -8 303 1 186 118 0 0 chr3 60064130 60064164 -157972994 + (CTG)n Simple_repeat Simple_repeat 2 35 0 204 40 0 0 chr3 60068057 60068082 -157969076 + (CCA)n Simple_repeat Simple_repeat 3 27 0 1274 116 11 0 chr3 60069971 60070161 -157966997 - AluSg/x SINE Alu -2 310 119 2230 75 6 35 chr3 60070165 60070484 -157966674 - AluSx SINE Alu -2 310 1 272 291 73 12 chr3 60072404 60072569 -157964589 - L2 LINE L2 -262 3010 2836 284 213 190 25 chr3 60073448 60073576 -157963582 + MIR SINE MIR 20 170 -59 257 288 129 38 chr3 60075178 60075310 -157961848 - L2 LINE L2 -3 3310 3167 805 217 12 0 chr3 60075339 60075520 -157961638 + AluJo SINE Alu 120 302 0 2017 113 10 17 chr3 60075544 60075837 -157961321 + AluSx SINE Alu 1 291 -21 214 303 236 39 chr3 60075925 60076158 -157961000 - L2 LINE L2 -337 2977 2791 2090 115 7 0 chr3 60076158 60076453 -157960705 - AluSx SINE Alu -15 297 1 214 303 236 39 chr3 60076453 60076651 -157960507 - L2 LINE L2 -523 2791 2461 2288 108 0 0 chr3 60078064 60078371 -157958787 + AluSq SINE Alu 1 307 -6 562 260 22 50 chr3 60082690 60082871 -157954287 + MER5B DNA MER1_type 3 178 0 2283 92 0 10 chr3 60083014 60083328 -157953830 + AluSx SINE Alu 1 311 -1 905 271 231 16 chr3 60083371 60084056 -157953102 - L2 LINE L2 -784 2530 1699 2187 92 0 0 chr3 60084103 60084385 -157952773 + AluSq SINE Alu 1 282 -31 1064 128 0 0 chr3 60086625 60086774 -157950384 + AluSg/x SINE Alu 144 292 -18 1819 160 35 0 chr3 60086777 60087064 -157950094 + AluSx SINE Alu 1 297 -15 2034 147 0 6 chr3 60087064 60087376 -157949782 + AluSx SINE Alu 1 310 -2 2102 114 0 3 chr3 60087435 60087725 -157949433 + AluSg1 SINE Alu 1 289 -20 2163 107 0 10 chr3 60088903 60089202 -157947956 + AluSx SINE Alu 1 296 -16 2335 84 3 0 chr3 60089574 60089870 -157947288 - AluSp SINE Alu -16 297 1 1778 167 7 23 chr3 60089872 60090178 -157946980 - AluJo SINE Alu -11 301 1 228 273 30 15 chr3 60094977 60095043 -157942115 + L3b LINE CR1 1320 1386 -197 235 281 16 0 chr3 60095761 60095825 -157941333 - MIR3 SINE MIR -49 159 95 372 22 0 0 chr3 60096536 60096581 -157940577 + (TG)n Simple_repeat Simple_repeat 2 46 0 399 257 0 20 chr3 60098371 60098472 -157938686 + L2 LINE L2 3211 3309 -4 1364 187 49 13 chr3 60101263 60101568 -157935590 - MER58B DNA MER1_type -3 338 23 203 297 0 14 chr3 60102578 60102652 -157934506 + GA-rich Low_complexity Low_complexity 5 77 0 722 192 16 12 chr3 60104188 60104618 -157932540 + C-rich Low_complexity Low_complexity 1 432 0 300 316 7 31 chr3 60104622 60104802 -157932356 + CT-rich Low_complexity Low_complexity 1 175 0 450 267 15 11 chr3 60104815 60105095 -157932063 + CT-rich Low_complexity Low_complexity 1 281 0 231 247 27 14 chr3 60106747 60106820 -157930338 + CT-rich Low_complexity Low_complexity 4 77 0 243 173 0 0 chr3 60107192 60107244 -157929914 + (CA)n Simple_repeat Simple_repeat 1 52 0 207 186 0 0 chr3 60107829 60107872 -157929286 + (TG)n Simple_repeat Simple_repeat 1 43 0 212 258 237 11 chr3 60109203 60109296 -157927862 + L2 LINE L2 3200 3313 0 411 274 89 30 chr3 60109407 60109575 -157927583 + MER91A DNA MER1_type 4 181 -15 227 241 0 0 chr3 60109748 60109802 -157927356 - L2 LINE L2 -329 2984 2931 260 278 21 21 chr3 60109820 60109917 -157927241 - MIR3 SINE MIR -54 154 58 22 56 0 0 chr3 60113281 60113317 -157923841 + GC_rich Low_complexity Low_complexity 1 36 0 241 276 10 20 chr3 60113492 60113590 -157923568 + C-rich Low_complexity Low_complexity 4 100 0 201 81 0 54 chr3 60113898 60113935 -157923223 + (CACCC)n Simple_repeat Simple_repeat 1 35 0 225 0 0 0 chr3 60115071 60115096 -157922062 + (CA)n Simple_repeat Simple_repeat 2 26 0 2221 105 3 10 chr3 60116000 60116313 -157920845 + AluSx SINE Alu 1 311 -1 305 338 66 7 chr3 60116732 60116868 -157920290 - MIR SINE MIR -54 208 65 619 143 42 171 chr3 60117057 60117171 -157919987 - MER53 DNA DNA 0 189 114 1765 138 6 53 chr3 60117171 60117490 -157919668 + AluJo SINE Alu 1 304 -8 619 143 42 171 chr3 60117490 60117591 -157919567 - MER53 DNA DNA -75 114 2 2342 77 3 0 chr3 60117767 60118064 -157919094 - AluSp SINE Alu -15 298 1 311 315 39 31 chr3 60118471 60118601 -157918557 - MIR SINE MIR -98 164 34 817 150 0 0 chr3 60122313 60122433 -157914725 - 5S rRNA rRNA 0 121 2 226 367 84 19 chr3 60122963 60123178 -157913980 - L3b LINE CR1 -140 1443 1215 193 296 0 0 chr3 60123953 60123997 -157913161 - L2 LINE L2 0 3313 3270 424 304 78 34 chr3 60124289 60124493 -157912665 - L2 LINE L2 0 3313 3101 354 240 77 19 chr3 60125451 60125555 -157911603 - MIR SINE MIR -66 142 33 193 332 85 70 chr3 60126419 60126618 -157910540 - L2 LINE L2 -3 3269 3068 2109 133 0 0 chr3 60128349 60128650 -157908508 - AluSx SINE Alu -11 301 1 220 393 57 7 chr3 60130465 60130605 -157906553 + MIR SINE MIR 21 167 -95 376 320 34 14 chr3 60132498 60132645 -157904513 + MIR SINE MIR 43 192 -70 185 361 123 0 chr3 60132987 60133117 -157904041 - MIR SINE MIR -29 233 88 363 314 9 0 chr3 60134027 60134132 -157903026 + MIR SINE MIR 48 153 -109 227 313 131 0 chr3 60134486 60134585 -157902573 - MIR SINE MIR -41 221 110 296 264 16 36 chr3 60135442 60135773 -157901385 + (ATGGTG)n Simple_repeat Simple_repeat 1 324 0 189 284 155 0 chr3 60136367 60136483 -157900675 + MIR SINE MIR 16 149 -59 205 300 0 0 chr3 60137383 60137443 -157899715 + L3b LINE CR1 1326 1385 -198 310 235 102 10 chr3 60137454 60137552 -157899606 + L2 LINE L2 3206 3312 -1 352 314 174 31 chr3 60138203 60138560 -157898598 - L2 LINE L2 -52 3220 2813 239 343 91 35 chr3 60139016 60139159 -157897999 - MIR3 SINE MIR -22 186 36 2001 104 19 41 chr3 60140202 60140519 -157896639 + AluSx SINE Alu 1 310 -2 23 68 0 0 chr3 60140934 60140978 -157896180 + AT_rich Low_complexity Low_complexity 1 44 0 907 103 8 0 chr3 60141240 60141366 -157895792 + FLAM_C SINE Alu 1 127 -16 266 354 69 8 chr3 60142464 60142594 -157894564 + MIR SINE MIR 28 165 -97 256 253 35 46 chr3 60143587 60143674 -157893484 - MIR SINE MIR -131 131 46 229 314 154 24 chr3 60143702 60143871 -157893287 - L2 LINE L2 -5 3267 3077 252 251 171 62 chr3 60144581 60144731 -157892427 - MIR SINE MIR -65 143 13 319 317 34 34 chr3 60145706 60145911 -157891247 - L2 LINE L2 -470 2844 2640 245 297 76 8 chr3 60146824 60146942 -157890216 + MIR3 SINE MIR 11 136 -72 319 275 138 7 chr3 60149000 60149138 -157888020 - MIR SINE MIR -83 179 24 196 352 55 0 chr3 60152008 60152099 -157885059 - MIR SINE MIR -165 97 2 182 298 18 0 chr3 60154664 60154721 -157882437 + MIR3 SINE MIR 99 156 -52 297 305 8 55 chr3 60155208 60155336 -157881822 + L3 LINE CR1 1413 1534 -43 297 183 73 61 chr3 60155698 60155780 -157881378 + MIR SINE MIR 109 191 -71 264 246 18 0 chr3 60157758 60157815 -157879343 + MIR SINE MIR 89 146 -116 406 304 101 0 chr3 60160073 60160221 -157876937 - L3 LINE CR1 -72 1505 1343 204 332 72 62 chr3 60160958 60161347 -157875811 + L2 LINE L2 2819 3211 -61 199 303 0 30 chr3 60162105 60162171 -157874987 - L2 LINE L2 -1898 1416 1353 319 291 83 14 chr3 60162969 60163145 -157874013 + MIR SINE MIR 17 212 -37 266 338 0 0 chr3 60163214 60163288 -157873870 + C-rich Low_complexity Low_complexity 5 78 0 243 232 72 0 chr3 60165439 60165508 -157871650 - MIR SINE MIR -92 170 97 198 256 77 26 chr3 60165942 60166020 -157871138 + MIR SINE MIR 61 142 -120 202 281 0 16 chr3 60166528 60166592 -157870566 + CT-rich Low_complexity Low_complexity 5 67 0 216 97 0 0 chr3 60166754 60166785 -157870373 + (CA)n Simple_repeat Simple_repeat 1 31 0 189 0 0 0 chr3 60166922 60166943 -157870215 + (CA)n Simple_repeat Simple_repeat 1 21 0 850 137 65 60 chr3 60168558 60168726 -157868432 + FRAM SINE Alu 1 168 -8 2152 128 27 19 chr3 60168726 60169092 -157868066 + L1MB7 LINE L1 5814 6182 -2 2065 143 13 0 chr3 60170067 60170375 -157866783 - AluSx SINE Alu 0 312 1 307 327 127 7 chr3 60170461 60170611 -157866547 - MIR SINE MIR -78 184 17 413 271 51 0 chr3 60171440 60171558 -157865600 - L2 LINE L2 -1 3271 3148 505 283 22 78 chr3 60172110 60172290 -157864868 + MER5B DNA MER1_type 1 170 -8 2188 54 13 70 chr3 60172293 60172607 -157864551 - AluY SINE Alu -15 296 1 538 288 49 15 chr3 60172668 60172835 -157864323 - MIR SINE MIR -19 243 66 1807 159 3 3 chr3 60172835 60173130 -157864028 - AluSx SINE Alu -17 295 1 538 288 49 15 chr3 60173130 60173167 -157863991 - MIR SINE MIR -196 66 32 1009 204 19 0 chr3 60173776 60173982 -157863176 - MER20 DNA MER1_type -9 210 1 200 341 89 16 chr3 60175842 60175965 -157861193 - MIR SINE MIR -115 147 16 396 325 10 39 chr3 60176595 60176801 -157860357 - L2 LINE L2 -159 3113 2914 201 330 121 65 chr3 60177338 60177553 -157859605 - L2 LINE L2 -1 3271 3045 187 275 100 18 chr3 60177880 60178047 -157859111 + MIR SINE MIR 3 142 -66 197 260 0 0 chr3 60179035 60179085 -157858073 - MIR SINE MIR -71 137 88 262 275 101 8 chr3 60179305 60179436 -157857722 + MIR SINE MIR 39 182 -68 265 258 0 0 chr3 60179790 60179852 -157857306 - MIR SINE MIR -117 91 30 239 379 34 40 chr3 60181330 60181507 -157855651 + L3b LINE CR1 1345 1520 -63 379 287 30 0 chr3 60184241 60184342 -157852816 + MIR SINE MIR 81 184 -78 2169 133 0 0 chr3 60184827 60185135 -157852023 + AluSx SINE Alu 1 308 -4 549 0 0 0 chr3 60185514 60185575 -157851583 + (CA)n Simple_repeat Simple_repeat 1 61 0 288 77 0 0 chr3 60187659 60187698 -157849460 + (CA)n Simple_repeat Simple_repeat 1 39 0 200 182 0 0 chr3 60187909 60187942 -157849216 - MIR SINE MIR -113 149 117 1324 170 18 0 chr3 60190438 60190656 -157846502 + AluJb SINE Alu 81 302 -10 1942 259 134 49 chr3 60191111 60191498 -157845660 - HAL1 LINE L1 -10 2497 2144 1843 138 10 17 chr3 60191498 60191854 -157845304 - AluSx SINE Alu 0 312 1 1942 259 134 49 chr3 60191854 60192180 -157844978 - HAL1 LINE L1 -363 2144 1847 1917 97 47 72 chr3 60192180 60192500 -157844658 - AluSx SINE Alu 0 312 1 1942 259 134 49 chr3 60192500 60192938 -157844220 - HAL1 LINE L1 -660 1847 1247 430 299 114 28 chr3 60192957 60193081 -157844077 - HAL1 LINE L1 -1321 1186 1074 2501 60 0 0 chr3 60193081 60193383 -157843775 - AluY SINE Alu -9 302 1 430 299 114 28 chr3 60193383 60193469 -157843689 - HAL1 LINE L1 -1433 1074 958 326 194 48 0 chr3 60193474 60193536 -157843622 - L1MD3 LINE L1 -5 7990 7926 1328 158 15 0 chr3 60193536 60193796 -157843362 - L1MD3 LINE L1 -25 7970 7707 201 39 0 0 chr3 60193840 60193866 -157843292 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 483 264 62 5 chr3 60195127 60195320 -157841838 - HAL1 LINE L1 -2256 251 48 2118 120 0 0 chr3 60196667 60196988 -157840170 - AluSx SINE Alu 0 321 1 205 262 79 63 chr3 60197089 60197215 -157839943 + MIR3 SINE MIR 32 159 -49 401 238 82 49 chr3 60197771 60197893 -157839265 + MIR SINE MIR 66 191 -71 267 294 159 37 chr3 60200268 60200431 -157836727 + MIR SINE MIR 8 190 -72 679 338 84 19 chr3 60200956 60201421 -157835737 - HERV16 LTR ERVL -4291 705 211 840 217 52 9 chr3 60201589 60201819 -157835339 - LTR16A LTR ERVL -15 435 196 334 325 42 14 chr3 60201981 60202128 -157835030 + MIR SINE MIR 34 183 -65 2234 86 3 3 chr3 60202530 60202822 -157834336 + AluSq SINE Alu 1 292 -21 251 375 111 28 chr3 60207772 60208025 -157829133 + L2 LINE L2 2990 3263 -9 205 301 27 27 chr3 60208283 60208356 -157828802 + MER5B DNA MER1_type 101 173 -5 360 0 0 0 chr3 60209072 60209112 -157828046 + (CCCCAG)n Simple_repeat Simple_repeat 3 42 0 206 232 110 37 chr3 60209541 60209623 -157827535 + MIR SINE MIR 101 188 -74 242 325 0 12 chr3 60209624 60209704 -157827454 - L2 LINE L2 0 3272 3194 2266 91 0 3 chr3 60209729 60210037 -157827121 + AluY SINE Alu 1 307 -4 222 37 0 0 chr3 60210333 60210360 -157826798 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 266 308 173 45 chr3 60210562 60210874 -157826284 + L2 LINE L2 2921 3272 0 269 346 109 0 chr3 60211578 60211679 -157825479 + MIR SINE MIR 38 149 -113 625 257 215 40 chr3 60213978 60214755 -157822403 - L2 LINE L2 -145 3168 2251 258 282 28 0 chr3 60214776 60214847 -157822311 + MIR SINE MIR 81 153 -109 208 310 120 13 chr3 60216244 60216366 -157820792 - MIR SINE MIR -62 146 13 1871 157 10 0 chr3 60216710 60217015 -157820143 - AluJb SINE Alu -4 308 1 262 235 27 7 chr3 60217771 60217923 -157819235 + C-rich Low_complexity Low_complexity 1 155 0 229 289 64 17 chr3 60218380 60218475 -157818683 - MIR SINE MIR -35 173 80 192 330 87 29 chr3 60218561 60218664 -157818494 + MIR SINE MIR 66 174 -88 941 244 40 0 chr3 60219813 60220014 -157817144 + MER63A DNA MER1_type 1 209 -1 461 330 24 42 chr3 60220018 60220230 -157816928 + MIR SINE MIR 55 262 0 278 284 69 17 chr3 60221383 60221499 -157815659 - MIR SINE MIR -53 209 88 2415 78 0 0 chr3 60221500 60221809 -157815349 + AluY SINE Alu 1 309 -2 206 250 77 0 chr3 60222021 60222073 -157815085 - MIR SINE MIR -85 123 68 184 336 74 33 chr3 60224244 60224366 -157812792 + MIR3 SINE MIR 37 163 -45 931 71 0 0 chr3 60274412 60274562 -157762596 + AluY SINE Alu 170 319 0 312 241 0 0 chr3 60274630 60274709 -157762449 + CT-rich Low_complexity Low_complexity 1 79 0 1817 168 21 0 chr3 60274709 60275000 -157762158 - AluJb SINE Alu -2 310 14 1116 127 0 76 chr3 60275000 60275197 -157761961 - AluSg/x SINE Alu -10 302 121 1741 107 16 8 chr3 60275243 60275487 -157761671 - AluSq SINE Alu -8 305 60 1713 110 0 0 chr3 60275587 60275806 -157761352 - AluSg SINE Alu -91 219 1 1286 263 198 6 chr3 60275823 60276309 -157760849 - L2 LINE L2 -952 2362 1784 236 244 42 117 chr3 60276445 60276581 -157760577 + MLT1J2 LTR MaLR 250 366 -80 2070 87 17 27 chr3 60276581 60276880 -157760278 + AluSx SINE Alu 1 296 -16 236 244 42 117 chr3 60276880 60276956 -157760202 + MLT1J2 LTR MaLR 366 446 0 246 267 27 0 chr3 60276995 60277070 -157760088 - L2 LINE L2 -1538 1776 1700 385 163 81 0 chr3 60277071 60277157 -157760001 - L1ME3A LINE L1 -1 6169 6077 1736 179 3 0 chr3 60277388 60277673 -157759485 - AluJo SINE Alu -26 286 1 1516 187 83 4 chr3 60277916 60278194 -157758964 + AluSx SINE Alu 1 300 -12 718 93 0 0 chr3 60278523 60278620 -157758538 + AluS SINE Alu 2 98 -215 1704 118 4 4 chr3 60278720 60278949 -157758209 - AluSg SINE Alu -81 229 1 26 30 0 0 chr3 60278980 60279013 -157758145 + AT_rich Low_complexity Low_complexity 1 33 0 2037 122 41 3 chr3 60279205 60279499 -157757659 - AluSc SINE Alu -4 305 1 975 86 47 0 chr3 60279499 60279627 -157757531 - AluY SINE Alu -177 134 1 30 0 0 0 chr3 60279627 60279657 -157757501 + AT_rich Low_complexity Low_complexity 1 30 0 1247 169 6 0 chr3 60279657 60279840 -157757318 - AluSx SINE Alu -126 186 3 429 138 15 0 chr3 60280295 60280360 -157756798 + AluJ/FLAM SINE Alu 2 67 -245 1160 153 21 89 chr3 60280460 60280515 -157756643 + AluJo SINE Alu 82 139 -173 1947 109 4 0 chr3 60280515 60280772 -157756386 + AluSx SINE Alu 31 288 -24 1160 153 21 89 chr3 60280772 60280952 -157756206 + AluJo SINE Alu 139 301 -11 298 357 32 8 chr3 60281110 60281236 -157755922 + MLT1K LTR MaLR 157 285 -303 752 172 6 19 chr3 60281238 60281395 -157755763 + L1M4 LINE L1 5058 5212 -934 351 285 70 27 chr3 60281395 60281615 -157755543 + L1M4c LINE L1 14 495 -6080 226 270 34 0 chr3 60281902 60281991 -157755167 + L1M4c LINE L1 802 893 -5753 2404 83 0 3 chr3 60281992 60282292 -157754866 + AluSx SINE Alu 1 299 -13 657 184 0 46 chr3 60282302 60282365 -157754793 + L1M4c LINE L1 1862 1926 -4720 2564 53 0 35 chr3 60282365 60282684 -157754474 + AluY SINE Alu 1 308 -3 657 184 0 46 chr3 60282684 60282772 -157754386 + L1M4c LINE L1 1926 2006 -4640 1873 136 3 30 chr3 60282773 60283075 -157754083 + AluSg SINE Alu 3 296 -14 418 141 130 0 chr3 60283190 60283292 -157753866 - L1M1 LINE L1 -3944 3621 3508 1436 136 55 97 chr3 60283298 60283607 -157753551 - AluJo SINE Alu -5 307 12 2345 89 13 0 chr3 60283626 60283928 -157753230 - AluSq SINE Alu -7 306 1 2356 77 3 0 chr3 60283933 60284261 -157752897 - AluSp SINE Alu 0 329 1 1415 189 62 34 chr3 60284275 60284566 -157752592 - AluJo SINE Alu 0 302 4 577 175 22 88 chr3 60284607 60284744 -157752414 - FLAM_A SINE Alu -1 132 5 1223 200 40 3 chr3 60284791 60285091 -157752067 - L1M4c LINE L1 -4151 2233 1923 1737 132 0 0 chr3 60285124 60285367 -157751791 - AluSx SINE Alu -8 304 62 1525 192 4 14 chr3 60285535 60285811 -157751347 - AluSx SINE Alu -39 273 1 2082 112 24 20 chr3 60285842 60286138 -157751020 + AluSx SINE Alu 1 297 -15 2257 100 0 20 chr3 60286138 60286439 -157750719 + AluSg SINE Alu 1 295 -15 1026 198 0 0 chr3 60286439 60286611 -157750547 + AluJo/FRAM SINE Alu 134 305 -7 698 189 0 8 chr3 60286615 60286737 -157750421 + FLAM_C SINE Alu 1 121 -22 507 197 0 0 chr3 60286748 60286865 -157750293 + L1MB4 LINE L1 5192 5308 -838 2343 84 10 0 chr3 60286865 60287163 -157749995 + AluSp SINE Alu 1 301 -12 1429 147 132 16 chr3 60287197 60287333 -157749825 + AluSg SINE Alu 1 120 -190 2225 115 13 3 chr3 60287333 60287638 -157749520 + AluSc SINE Alu 1 308 -1 2194 126 0 0 chr3 60287641 60287965 -157749193 + AluSg SINE Alu 1 324 0 1429 147 132 16 chr3 60287965 60288118 -157749040 + AluSg SINE Alu 121 310 0 1506 197 47 23 chr3 60288127 60288250 -157748908 + AluJb SINE Alu 1 120 -192 228 67 0 0 chr3 60288250 60288280 -157748878 + (CA)n Simple_repeat Simple_repeat 1 30 0 1506 197 47 23 chr3 60288280 60288455 -157748703 + AluJb SINE Alu 120 306 -6 1357 160 51 7 chr3 60288458 60288733 -157748425 - L1MB3 LINE L1 -171 6012 5726 438 95 135 14 chr3 60288833 60288907 -157748251 - MLT1B LTR MaLR -307 83 1 427 179 12 0 chr3 60288908 60288992 -157748166 + L1MB3 LINE L1 5523 5607 -561 1242 190 0 5 chr3 60288993 60289209 -157747949 + AluJo SINE Alu 87 301 -11 2464 59 3 10 chr3 60289211 60289514 -157747644 + AluY SINE Alu 1 301 -10 2819 149 16 36 chr3 60289514 60289610 -157747548 + L1MB3 LINE L1 5599 5695 -488 2281 99 7 3 chr3 60289610 60289913 -157747245 + AluSx SINE Alu 1 304 -8 2819 149 16 36 chr3 60289913 60290374 -157746784 + L1MB3 LINE L1 5695 6145 -38 803 163 67 46 chr3 60290388 60290628 -157746530 + L1MB4 LINE L1 5372 5616 -564 827 174 0 0 chr3 60290636 60290774 -157746384 + FLAM_C SINE Alu 3 140 -3 1829 155 16 35 chr3 60290779 60291089 -157746069 + AluJo SINE Alu 1 304 -8 2292 148 63 45 chr3 60291103 60291507 -157745651 + L1MB4 LINE L1 5609 6025 -155 1728 131 120 0 chr3 60291507 60291774 -157745384 - AluSx SINE Alu -9 303 5 2292 148 63 45 chr3 60291774 60291875 -157745283 + L1MB4 LINE L1 6025 6123 -57 2479 53 0 26 chr3 60291875 60292178 -157744980 - AluY SINE Alu -13 298 4 2370 84 3 3 chr3 60293047 60293346 -157743812 + AluSc SINE Alu 1 299 -10 24 0 0 0 chr3 60293347 60293371 -157743787 + AT_rich Low_complexity Low_complexity 1 24 0 2569 57 0 0 chr3 60294320 60294619 -157742539 - AluY SINE Alu -12 299 1 373 267 10 30 chr3 60295655 60295756 -157741402 + HAL1 LINE L1 985 1083 -1424 977 158 0 35 chr3 60295856 60296027 -157741131 + AluSg/x SINE Alu 143 307 -3 2583 65 0 0 chr3 60296093 60296400 -157740758 + AluY SINE Alu 1 307 -4 319 77 135 0 chr3 60296424 60296476 -157740682 - L1MB7 LINE L1 -64 6120 6062 582 114 0 0 chr3 60297314 60297402 -157739756 + (ATGTG)n Simple_repeat Simple_repeat 2 89 0 1541 151 110 4 chr3 60297408 60297653 -157739505 - AluSx SINE Alu -31 281 11 1903 145 0 36 chr3 60297673 60297977 -157739181 - AluJb SINE Alu -18 294 2 24 0 0 0 chr3 60297980 60298004 -157739154 + AT_rich Low_complexity Low_complexity 1 24 0 605 228 89 0 chr3 60298519 60298642 -157738516 - FLAM_A SINE Alu -8 134 1 1412 151 127 58 chr3 60298843 60298976 -157738182 + AluJo SINE Alu 1 123 -189 2103 113 20 10 chr3 60298976 60299268 -157737890 + AluSx SINE Alu 1 295 -17 2327 96 0 10 chr3 60299270 60299572 -157737586 + AluSq SINE Alu 1 299 -14 1412 151 127 58 chr3 60299572 60299727 -157737431 + AluJo SINE Alu 123 312 0 2610 11 0 0 chr3 60300035 60300312 -157736846 + AluYb8 SINE Alu 29 305 -13 386 326 149 27 chr3 60300617 60300985 -157736173 + L2 LINE L2 2857 3269 -3 307 214 30 0 chr3 60301629 60301723 -157735435 + MIR SINE MIR 36 136 -72 2316 91 0 39 chr3 60301865 60302008 -157735150 + AluSg SINE Alu 1 148 -162 2642 47 0 0 chr3 60302008 60302307 -157734851 + AluY SINE Alu 1 299 -12 2316 91 0 39 chr3 60302307 60302472 -157734686 + AluSg SINE Alu 148 297 -13 397 232 74 0 chr3 60302611 60302706 -157734452 - MIR SINE MIR -58 204 103 696 302 76 27 chr3 60302732 60303033 -157734125 + LTR16A LTR ERVL 16 331 -119 299 243 117 9 chr3 60303625 60303736 -157733422 - MIR SINE MIR -65 143 21 2528 51 0 3 chr3 60304584 60304880 -157732278 - AluY SINE Alu -16 295 1 229 143 0 0 chr3 60305260 60305295 -157731863 - Alu SINE Alu -264 35 1 1315 185 21 115 chr3 60305381 60305765 -157731393 - MER7A DNA MER2_type 0 346 1 2078 236 62 58 chr3 60306161 60306866 -157730292 - MER21B LTR ERV1 -155 708 1 1700 199 3 3 chr3 60307167 60307496 -157729662 - AluJb SINE Alu 0 338 10 235 387 48 0 chr3 60307765 60307889 -157729269 - MIR SINE MIR -66 196 67 238 203 68 17 chr3 60307962 60308021 -157729137 - L2 LINE L2 -37 3235 3174 2167 125 0 0 chr3 60308623 60308910 -157728248 + AluSx SINE Alu 11 297 -15 1099 117 0 0 chr3 60309065 60309210 -157727948 + AluSp SINE Alu 152 296 -17 1690 195 17 14 chr3 60309320 60309617 -157727541 - AluJb SINE Alu -14 298 1 469 185 33 73 chr3 60309835 60309928 -157727230 - L1MC4 LINE L1 -142 7900 7814 2115 136 0 13 chr3 60309928 60310236 -157726922 + AluSx SINE Alu 1 304 -8 469 185 33 73 chr3 60310236 60310293 -157726865 - L1MC4 LINE L1 -228 7814 7756 * 989 156 47 153 chr3 60310292 60310492 -157726666 - L1ME1 LINE L1 -93 6073 5853 2169 130 0 7 chr3 60310492 60310799 -157726359 + AluSx SINE Alu 1 305 -7 1900 159 42 0 chr3 60310805 60311139 -157726019 - L1MB5 LINE L1 -17 6157 5810 989 156 47 153 chr3 60311139 60311298 -157725860 - L1ME1 LINE L1 -318 5848 5742 389 201 180 7 chr3 60311412 60311551 -157725607 + MER46C DNA MER2_type 2 164 -174 225 252 139 35 chr3 60311581 60311696 -157725462 + MER46C DNA MER2_type 212 338 0 1844 170 0 0 chr3 60311945 60312228 -157724930 + AluJo SINE Alu 13 295 -17 785 226 0 0 chr3 60312265 60312398 -157724760 - FLAM_A SINE Alu 0 133 1 614 365 21 3 chr3 60312938 60313220 -157723938 - L2 LINE L2 -356 2958 2672 25 31 0 0 chr3 60314128 60314160 -157722998 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr3 60314558 60314582 -157722576 + AT_rich Low_complexity Low_complexity 1 24 0 1364 159 78 78 chr3 60315099 60315247 -157721911 + AluJo SINE Alu 5 152 -160 2407 109 0 0 chr3 60315247 60315559 -157721599 + AluSx SINE Alu 1 312 0 2544 64 0 3 chr3 60315561 60315859 -157721299 + AluY SINE Alu 1 297 -14 1364 159 78 78 chr3 60315859 60316002 -157721156 + AluJo SINE Alu 152 299 -13 2178 113 0 0 chr3 60316036 60316346 -157720812 + AluY SINE Alu 1 310 0 2445 98 0 0 chr3 60316348 60316653 -157720505 + AluSx SINE Alu 2 306 -6 223 329 71 0 chr3 60316654 60316739 -157720419 + MIR SINE MIR 2 92 -170 282 304 29 10 chr3 60316825 60316927 -157720231 + L2 LINE L2 2955 3058 -255 986 158 23 12 chr3 60316929 60317100 -157720058 + AluJb SINE Alu 124 296 -16 1996 135 4 0 chr3 60317102 60317383 -157719775 + AluSx SINE Alu 1 282 -30 229 302 221 13 chr3 60317418 60317567 -157719591 + L2 LINE L2 3112 3291 -22 257 250 42 14 chr3 60317589 60317661 -157719497 + MIR SINE MIR 176 249 -13 267 247 27 0 chr3 60317668 60317741 -157719417 - L1ME LINE L1 -343 5778 5704 780 241 10 5 chr3 60317840 60318035 -157719123 + L1MD2 LINE L1 6152 6347 -12 1366 118 16 0 chr3 60318483 60318669 -157718489 + AluSg/x SINE Alu 84 272 -38 980 218 0 0 chr3 60319507 60319686 -157717472 - MER58A DNA MER1_type -1 223 45 2027 159 0 19 chr3 60319952 60320260 -157716898 + AluSx SINE Alu 4 305 -7 1156 119 6 0 chr3 60320743 60320903 -157716255 + AluSg/x SINE Alu 120 280 -30 1543 202 0 39 chr3 60321280 60321414 -157715744 + AluJb SINE Alu 6 144 -168 1789 200 0 0 chr3 60321414 60321714 -157715444 + AluSx SINE Alu 1 300 -12 1543 202 0 39 chr3 60321714 60321886 -157715272 + AluJb SINE Alu 144 300 -12 968 161 0 26 chr3 60321887 60322042 -157715116 + AluJb SINE Alu 135 285 -27 309 305 137 0 chr3 60322115 60322210 -157714948 - L1MC4 LINE L1 -1321 6721 6614 308 193 169 0 chr3 60322140 60322223 -157714935 + L1MC3 LINE L1 6571 6667 -1118 * 208 143 0 0 chr3 60322295 60322330 -157714828 + (A)n Simple_repeat Simple_repeat 1 35 0 2253 110 0 0 chr3 60322332 60322642 -157714516 + AluSg SINE Alu 1 310 0 1367 51 6 23 chr3 60322708 60322883 -157714275 + AluY SINE Alu 137 308 -3 2224 130 3 0 chr3 60325502 60325809 -157711349 - AluSx SINE Alu -4 308 1 891 163 22 0 chr3 60326006 60326141 -157711017 - AluJo SINE Alu -174 138 1 2263 103 3 3 chr3 60326579 60326870 -157710288 + AluSx SINE Alu 3 293 -19 2384 88 10 3 chr3 60326882 60327188 -157709970 + AluSc SINE Alu 1 308 -1 565 267 74 11 chr3 60329545 60329721 -157707437 - MIR SINE MIR -72 190 4 190 224 11 87 chr3 60334107 60334197 -157702961 + MER5B DNA MER1_type 81 161 -28 806 141 23 0 chr3 60334209 60334337 -157702821 - FLAM_C SINE Alu -2 131 1 1885 178 0 31 chr3 60334730 60334872 -157702286 + AluJo SINE Alu 1 146 -166 2166 113 3 0 chr3 60334872 60335211 -157701947 + AluSx SINE Alu 1 340 0 1885 178 0 31 chr3 60335211 60335387 -157701771 + AluJo SINE Alu 146 310 -2 335 121 17 0 chr3 60335393 60335451 -157701707 + GA-rich Low_complexity Low_complexity 5 63 0 1531 111 28 0 chr3 60336573 60336826 -157700332 + L1MA3 LINE L1 6036 6295 -10 438 66 0 0 chr3 60336827 60336888 -157700270 - Alu SINE Alu -15 295 235 1618 111 0 0 chr3 60336988 60337205 -157699953 + AluSg/x SINE Alu 93 309 -1 381 278 20 92 chr3 60337208 60337283 -157699875 + L1MEc LINE L1 1274 1353 -5043 2635 65 0 0 chr3 60337283 60337590 -157699568 + AluY SINE Alu 1 307 -4 381 278 20 92 chr3 60337590 60337649 -157699509 + L1MEc LINE L1 1353 1415 -4981 2288 124 0 9 chr3 60337649 60337964 -157699194 + AluSx SINE Alu 1 312 0 381 278 20 92 chr3 60337964 60338123 -157699035 + L1MEc LINE L1 1415 1547 -4849 866 136 0 0 chr3 60338132 60338280 -157698878 + FLAM_C SINE Alu 1 148 0 416 143 51 1 chr3 60338282 60338369 -157698789 + L1MEc LINE L1 2351 2440 -3775 2287 102 0 10 chr3 60338373 60338666 -157698492 + AluSg SINE Alu 1 290 -20 328 100 0 0 chr3 60338765 60338815 -157698343 + Alu SINE Alu 248 297 -5 1914 158 7 3 chr3 60338853 60339157 -157698001 + AluJb SINE Alu 1 305 -7 302 343 36 11 chr3 60339278 60339552 -157697606 + L1MEc LINE L1 2030 2310 -4086 1947 153 0 23 chr3 60339584 60339891 -157697267 + AluJb SINE Alu 1 300 -12 1928 103 8 4 chr3 60340006 60340297 -157696861 + AluSx SINE Alu 30 321 0 233 169 84 14 chr3 60340932 60341003 -157696155 + L2 LINE L2 2979 3054 -218 1139 264 96 1 chr3 60347587 60348007 -157689151 + L1ME3A LINE L1 5498 5953 -217 1933 154 46 3 chr3 60348164 60348469 -157688689 - 7SLRNA srpRNA srpRNA -2 318 1 1007 158 0 47 chr3 60348496 60348667 -157688491 - AluJb SINE Alu -47 265 103 259 83 0 125 chr3 60348770 60348818 -157688340 - AluSp SINE Alu -133 170 129 287 247 52 31 chr3 60350335 60350432 -157686726 + L1ME LINE L1 5699 5797 -324 216 0 0 0 chr3 60350944 60350968 -157686190 + (TCC)n Simple_repeat Simple_repeat 2 25 0 2353 109 0 13 chr3 60361396 60361709 -157675449 + AluSp SINE Alu 3 311 -2 185 56 0 83 chr3 60363087 60363123 -157674035 + (TGGGGG)n Simple_repeat Simple_repeat 3 35 0 2519 61 3 0 chr3 60363443 60363753 -157673405 - AluY SINE Alu 0 311 1 908 129 0 0 chr3 60364269 60364393 -157672765 + AluJo/FLAM SINE Alu 1 124 -188 2000 94 8 0 chr3 60364396 60364663 -157672495 - AluSq SINE Alu -19 294 26 1601 156 41 14 chr3 60365153 60365448 -157671710 - AluJo SINE Alu -9 303 1 517 312 110 9 chr3 60365487 60365705 -157671453 - MIR SINE MIR 0 262 23 197 289 52 41 chr3 60366908 60367005 -157670153 - MIR3 SINE MIR -30 178 81 1963 130 10 7 chr3 60368171 60368464 -157668694 + AluSx SINE Alu 1 294 -18 1967 133 93 13 chr3 60368727 60369102 -157668056 + MSTA LTR MaLR 1 405 -23 191 250 125 28 chr3 60370300 60370372 -157666786 - L2 LINE L2 -24 3248 3170 2231 105 0 3 chr3 60370910 60371214 -157665944 - AluSx SINE Alu -9 303 1 1019 275 18 21 chr3 60371231 60371558 -157665600 + L2 LINE L2 2089 2414 -900 357 211 0 0 chr3 60371632 60371709 -157665449 - AluJ/FRAM SINE Alu -7 295 228 587 289 32 0 chr3 60371710 60371866 -157665292 - L2 LINE L2 -513 2801 2641 500 162 0 81 chr3 60371868 60371967 -157665191 + FRAM SINE Alu 31 121 -55 670 294 75 49 chr3 60371971 60372286 -157664872 + L2 LINE L2 2826 3131 -182 2266 81 17 0 chr3 60372286 60372581 -157664577 - AluSc SINE Alu -9 300 1 1973 117 7 3 chr3 60372581 60372863 -157664295 - AluSg SINE Alu -27 283 1 670 294 75 49 chr3 60372863 60372893 -157664265 + L2 LINE L2 3130 3181 -132 2148 101 0 3 chr3 60373269 60373565 -157663593 - AluSx SINE Alu -4 308 14 457 125 0 80 chr3 60373620 60373730 -157663428 + FLAM_A SINE Alu 42 142 0 2353 73 0 3 chr3 60373896 60374199 -157662959 - AluY SINE Alu -9 302 1 2327 74 3 0 chr3 60374199 60374495 -157662663 - AluSg1 SINE Alu -12 297 1 1190 134 0 0 chr3 60374495 60374667 -157662491 - AluSg/x SINE Alu -7 305 134 2253 69 7 0 chr3 60374667 60374957 -157662201 - AluY SINE Alu -15 296 5 2124 90 4 0 chr3 60374960 60375261 -157661897 - AluSg1 SINE Alu 0 302 1 2196 100 0 19 chr3 60375261 60375572 -157661586 - AluSx SINE Alu -7 305 1 22 35 0 0 chr3 60376310 60376339 -157660819 + GC_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr3 60376769 60376790 -157660368 + (T)n Simple_repeat Simple_repeat 1 21 0 2068 94 66 0 chr3 60377256 60377544 -157659614 + AluSp SINE Alu 1 307 -6 593 101 0 45 chr3 60377645 60377734 -157659424 + AluSg/x SINE Alu 204 288 -22 746 141 37 52 chr3 60377743 60377878 -157659280 + FLAM_A SINE Alu 1 133 0 1919 119 0 21 chr3 60377880 60378188 -157658970 + AluSx SINE Alu 14 315 0 2218 99 0 0 chr3 60378192 60378517 -157658641 + AluSx SINE Alu 1 325 0 2231 105 0 0 chr3 60378517 60378811 -157658347 + AluSx SINE Alu 1 294 -18 2366 57 0 0 chr3 60378813 60379127 -157658031 + AluY SINE Alu 1 314 0 2280 86 0 3 chr3 60379127 60379474 -157657684 + AluSq SINE Alu 1 346 0 1857 152 3 19 chr3 60379476 60379791 -157657367 + AluJb SINE Alu 1 310 -2 529 228 0 24 chr3 60379846 60379973 -157657185 - MIR SINE MIR -75 187 64 2393 60 0 10 chr3 60380008 60380306 -157656852 - AluY SINE Alu -16 295 1 284 297 125 16 chr3 60383478 60383606 -157653552 + L2 LINE L2 2841 2982 -331 233 257 89 47 chr3 60384724 60384757 -157652401 - MIR3 SINE MIR -58 150 120 2152 97 13 7 chr3 60384757 60385065 -157652093 - AluSg SINE Alu 0 310 1 233 257 89 47 chr3 60385065 60385217 -157651941 - MIR3 SINE MIR -88 120 5 225 302 81 0 chr3 60385195 60385281 -157651877 + MIR3 SINE MIR 62 154 -54 * 198 71 0 0 chr3 60387116 60387144 -157650014 + (TGG)n Simple_repeat Simple_repeat 3 30 0 2144 71 7 52 chr3 60389549 60389857 -157647301 - AluSx SINE Alu -18 294 1 740 156 55 23 chr3 60390218 60390346 -157646812 + FLAM_C SINE Alu 1 132 -1 2034 92 13 57 chr3 60390377 60390692 -157646466 + AluSx SINE Alu 1 301 -11 231 270 226 31 chr3 60391050 60391209 -157645949 + L2 LINE L2 2915 3104 -168 2251 112 0 0 chr3 60392148 60392452 -157644706 - AluSx SINE Alu -8 304 1 527 0 0 16 chr3 60396373 60396437 -157640721 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 189 0 0 0 chr3 60396439 60396460 -157640698 + (TTG)n Simple_repeat Simple_repeat 1 21 0 411 299 19 0 chr3 60396515 60396622 -157640536 - MIR SINE MIR -74 188 80 283 336 99 40 chr3 60397345 60397568 -157639590 + L2 LINE L2 2715 2950 -364 263 317 152 30 chr3 60397935 60398099 -157639059 - L2 LINE L2 -9 3304 3121 405 220 92 35 chr3 60398709 60398850 -157638308 - L1ME4a LINE L1 0 6121 5973 1813 106 0 4 chr3 60398851 60399106 -157638052 - AluSx SINE Alu -10 302 49 715 158 143 0 chr3 60399112 60399266 -157637892 - AluJb SINE Alu 0 302 130 2203 83 30 3 chr3 60399268 60399569 -157637589 - AluSp SINE Alu 0 313 5 1736 168 3 20 chr3 60399573 60399731 -157637427 - AluJo SINE Alu -20 292 140 2230 109 0 0 chr3 60399731 60400034 -157637124 - AluSg SINE Alu -4 306 4 1736 168 3 20 chr3 60400034 60400172 -157636986 - AluJo SINE Alu -172 140 1 479 347 37 11 chr3 60400231 60400421 -157636737 - MIR SINE MIR -21 241 47 1438 189 16 26 chr3 60400448 60400754 -157636404 + AluJb SINE Alu 10 312 0 264 268 54 45 chr3 60401279 60401391 -157635767 + MIR SINE MIR 3 115 -147 1250 154 10 5 chr3 60402243 60402451 -157634707 - AluJo SINE Alu -103 209 1 2272 63 0 11 chr3 60402465 60402779 -157634379 - AluY SINE Alu 0 311 1 262 216 69 10 chr3 60402787 60402889 -157634269 + L2 LINE L2 1271 1378 -1936 451 128 16 120 chr3 60403000 60403033 -157634125 + L2 LINE L2 2426 2461 -853 2000 144 0 3 chr3 60403033 60403339 -157633819 + AluY SINE Alu 1 305 -6 451 128 16 120 chr3 60403339 60403430 -157633728 + L2 LINE L2 2461 2537 -777 2883 181 58 15 chr3 60403501 60403630 -157633528 + MLT1F LTR MaLR 3 125 -417 1984 141 3 10 chr3 60403630 60403934 -157633224 + AluSx SINE Alu 1 302 -10 2883 181 58 15 chr3 60403934 60404322 -157632836 + MLT1F LTR MaLR 125 542 0 1911 173 0 0 chr3 60404348 60404648 -157632510 - AluJb SINE Alu -12 300 1 1245 162 15 0 chr3 60404777 60404974 -157632184 + AluJb SINE Alu 85 284 -28 1393 270 27 54 chr3 60405068 60405610 -157631548 + L2 LINE L2 2534 3061 -252 1804 161 7 17 chr3 60405695 60405993 -157631165 - AluJb SINE Alu -17 295 1 2320 91 0 0 chr3 60406016 60406312 -157630846 - AluSx SINE Alu -16 296 1 354 219 62 0 chr3 60406503 60406599 -157630559 + MIR SINE MIR 104 205 -57 1286 105 6 0 chr3 60406983 60407164 -157629994 + AluSq SINE Alu 132 313 0 2198 83 0 35 chr3 60408162 60408474 -157628684 + AluSq SINE Alu 1 301 -12 514 174 6 174 chr3 60409544 60409612 -157627546 - MER5B DNA MER1_type 0 178 157 1828 125 45 0 chr3 60409612 60409900 -157627258 + AluSx SINE Alu 1 301 -11 514 174 6 174 chr3 60409900 60410009 -157627149 - MER5B DNA MER1_type -21 157 31 547 229 0 9 chr3 60410689 60410798 -157626360 + FRAM SINE Alu 1 104 -72 330 87 0 0 chr3 60410821 60410867 -157626291 + (GGAA)n Simple_repeat Simple_repeat 2 47 0 783 152 0 43 chr3 60410945 60411083 -157626075 - FLAM_C SINE Alu 0 133 2 2063 120 14 0 chr3 60411160 60411451 -157625707 - AluSg1 SINE Alu -14 295 1 2269 81 3 29 chr3 60411469 60411779 -157625379 - AluSg SINE Alu -8 302 1 2259 95 0 3 chr3 60411781 60412085 -157625073 - AluSc SINE Alu -6 303 1 1053 50 0 50 chr3 60412085 60412226 -157624932 - AluSg SINE Alu -176 134 1 2284 87 3 3 chr3 60412500 60412799 -157624359 - AluSp SINE Alu -14 299 1 1713 157 43 0 chr3 60412799 60413080 -157624078 - AluJo SINE Alu -17 295 3 606 202 0 0 chr3 60413084 60413193 -157623965 - FLAM_A SINE Alu -11 131 23 2312 80 0 13 chr3 60615557 60615859 -157421299 - AluY SINE Alu -13 298 1 205 277 0 0 chr3 60616333 60616380 -157420778 - MIR SINE MIR -92 170 124 1704 161 41 7 chr3 60616925 60617217 -157419941 - AluSx SINE Alu -10 302 1 258 0 0 0 chr3 60617303 60617337 -157419821 + AluSc SINE Alu 1 34 -274 4292 128 53 53 chr3 60617349 60618589 -157418569 - pTR5 LTR ERV1 -146 2292 743 759 83 18 18 chr3 60618589 60618692 -157418466 + AluSc SINE Alu 31 134 -170 1688 123 77 7 chr3 60618692 60618977 -157418181 + AluY SINE Alu 1 305 -6 247 159 0 23 chr3 60619690 60619734 -157417424 + MIR SINE MIR 119 161 -101 316 301 0 29 chr3 60620223 60620326 -157416832 + G-rich Low_complexity Low_complexity 3 102 0 267 263 117 130 chr3 60620617 60620798 -157416360 + L2 LINE L2 2956 3133 -139 1989 110 28 0 chr3 60620798 60621080 -157416078 + AluSx SINE Alu 1 290 -22 267 263 117 130 chr3 60621080 60621214 -157415944 + L2 LINE L2 3133 3267 -5 278 301 68 8 chr3 60622145 60622278 -157414880 + MIR3 SINE MIR 5 145 -63 221 365 32 0 chr3 60622771 60622909 -157414249 + MIR SINE MIR 30 170 -65 293 327 28 0 chr3 60623987 60624105 -157413053 - MIR SINE MIR -69 139 31 1929 149 7 7 chr3 60624119 60624421 -157412737 - AluJb SINE Alu 0 312 11 518 241 155 29 chr3 60625046 60625242 -157411916 - MIR SINE MIR -15 247 35 195 170 0 0 chr3 60625253 60625300 -157411858 + A-rich Low_complexity Low_complexity 1 47 0 24 53 0 0 chr3 60625647 60625685 -157411473 + GC_rich Low_complexity Low_complexity 1 38 0 2095 106 3 0 chr3 60626728 60627020 -157410138 - AluSx SINE Alu -19 293 1 2431 53 0 31 chr3 60627039 60627360 -157409798 - AluY SINE Alu 0 311 1 415 246 136 0 chr3 60627538 60627648 -157409510 - MIR SINE MIR -69 193 69 2165 68 7 4 chr3 60628742 60629046 -157408112 + AluY SINE Alu 1 305 0 395 306 79 65 chr3 60629046 60629182 -157407976 + L1MC4a LINE L1 5478 5334 -787 2372 78 3 0 chr3 60629182 60629490 -157407668 + AluSg SINE Alu 1 309 -1 395 306 79 65 chr3 60629490 60629779 -157407379 + L1MC4a LINE L1 5333 5617 -504 2240 107 0 16 chr3 60630072 60630389 -157406769 + AluSx SINE Alu 1 312 0 469 332 127 0 chr3 60631375 60631595 -157405563 - MIR SINE MIR -12 250 3 189 244 110 24 chr3 60632096 60632178 -157404980 + MIR SINE MIR 103 191 -71 2267 79 3 3 chr3 60632265 60632569 -157404589 - AluSg SINE Alu -6 304 1 291 307 8 0 chr3 60633324 60633451 -157403707 + (CA)n Simple_repeat Simple_repeat 2 129 0 203 306 10 20 chr3 60633540 60633638 -157403520 + (CA)n Simple_repeat Simple_repeat 2 98 0 372 303 59 26 chr3 60634063 60634215 -157402943 + MIR SINE MIR 106 262 0 220 346 83 13 chr3 60634445 60634601 -157402557 - MIR SINE MIR -72 190 24 1013 107 19 19 chr3 60635299 60635458 -157401700 + AluJb SINE Alu 152 310 -2 2117 92 0 14 chr3 60635483 60635614 -157401544 + AluSq SINE Alu 6 137 -179 2345 43 7 20 chr3 60635614 60635918 -157401240 + AluY SINE Alu 1 300 -11 2117 92 0 14 chr3 60635918 60636101 -157401057 + AluSq SINE Alu 137 316 0 385 186 133 18 chr3 60636177 60636290 -157400868 - MIR SINE MIR -17 245 120 2066 114 3 13 chr3 60636367 60636675 -157400483 - AluSp SINE Alu -8 305 1 2173 82 34 7 chr3 60636706 60637000 -157400158 - AluSx SINE Alu -10 302 1 268 246 223 23 chr3 60637033 60637163 -157399995 - MIR SINE MIR -89 173 18 399 281 55 43 chr3 60637730 60637894 -157399264 + MIR SINE MIR 84 249 -13 650 239 30 41 chr3 60638363 60638560 -157398598 - MIR SINE MIR -66 196 2 269 255 16 38 chr3 60641046 60641230 -157395928 + (CGGGG)n Simple_repeat Simple_repeat 1 180 0 41 72 0 0 chr3 60641316 60641399 -157395759 + GC_rich Low_complexity Low_complexity 1 83 0 198 250 0 28 chr3 60641420 60641492 -157395666 + (CGGGG)n Simple_repeat Simple_repeat 5 74 0 191 36 36 0 chr3 60641604 60641632 -157395526 + (CCG)n Simple_repeat Simple_repeat 3 31 0 26 30 0 0 chr3 60641652 60641685 -157395473 + GC_rich Low_complexity Low_complexity 1 33 0 210 254 93 51 chr3 60642865 60642983 -157394175 + MIR3 SINE MIR 14 136 -72 311 299 163 5 chr3 60643580 60643801 -157393357 - L2 LINE L2 -337 2977 2722 255 205 64 0 chr3 60645694 60645772 -157391386 + MIR SINE MIR 56 138 -70 221 347 32 0 chr3 60645825 60645920 -157391238 - L2 LINE L2 -16 3256 3159 281 301 97 0 chr3 60646758 60646861 -157390297 - MIR SINE MIR -111 151 39 406 281 50 29 chr3 60647370 60647509 -157389649 - MIR SINE MIR -48 214 73 201 233 0 0 chr3 60647831 60647874 -157389284 + (GGCTG)n Simple_repeat Simple_repeat 4 46 0 266 301 192 20 chr3 60651944 60652090 -157385068 - MIR3 SINE MIR -11 197 27 206 225 0 0 chr3 60654024 60654064 -157383094 + L2 LINE L2 3258 3297 -16 1126 141 24 0 chr3 60654215 60654385 -157382773 - AluJb SINE Alu -5 307 134 1163 279 122 60 chr3 60654578 60654994 -157382164 + L2 LINE L2 2176 2565 -748 1346 262 198 5 chr3 60654994 60655429 -157381729 + LTR33A LTR ERVL 1 519 -4 1163 279 122 60 chr3 60655429 60655828 -157381330 + L2 LINE L2 2565 2938 -375 2219 81 7 13 chr3 60655828 60656126 -157381032 - AluY SINE Alu -15 296 1 2386 55 0 35 chr3 60656126 60656438 -157380720 - AluY SINE Alu -10 301 1 1163 279 122 60 chr3 60656438 60656652 -157380506 + L2 LINE L2 2937 3264 -49 203 273 136 11 chr3 60656728 60656816 -157380342 - MIR3 SINE MIR -34 174 76 24 0 0 0 chr3 60657093 60657117 -157380041 + AT_rich Low_complexity Low_complexity 1 24 0 1105 238 87 43 chr3 60657183 60657776 -157379382 + L1MC4a LINE L1 5974 6619 -1189 948 208 0 0 chr3 60657788 60657961 -157379197 - FRAM SINE Alu -5 171 1 2761 202 141 36 chr3 60657962 60658847 -157378311 + L1MC4a LINE L1 6609 7586 -222 2010 154 0 3 chr3 60659009 60659321 -157377837 + AluJb SINE Alu 1 311 -1 2688 148 24 2 chr3 60659912 60660405 -157376753 + L1MA8 LINE L1 5616 6119 -172 321 331 50 0 chr3 60660781 60660920 -157376238 + L2 LINE L2 2917 3062 -210 952 165 51 0 chr3 60662203 60662363 -157374795 - FRAM SINE Alu -11 165 1 1753 166 28 0 chr3 60668162 60668446 -157368712 + AluJo SINE Alu 1 292 -20 2343 104 3 0 chr3 60668702 60669000 -157368158 - AluSx SINE Alu -13 299 1 931 235 81 0 chr3 60669300 60669547 -157367611 - L1ME1 LINE L1 -2 6164 5898 903 261 99 39 chr3 60670145 60670632 -157366526 - HAL1 LINE L1 -683 1824 1309 195 69 0 0 chr3 60670789 60670818 -157366340 + (GGA)n Simple_repeat Simple_repeat 2 30 0 289 320 128 0 chr3 60671955 60672080 -157365078 + L3 LINE CR1 1424 1564 -13 199 189 27 0 chr3 60672229 60672266 -157364892 - MIR SINE MIR -109 153 116 940 195 6 0 chr3 60672950 60673119 -157364039 + FRAM SINE Alu 1 170 -6 1031 66 0 7 chr3 60674004 60674141 -157363017 - L1MA2 LINE L1 -4 6300 6165 362 290 77 12 chr3 60674967 60675136 -157362022 - MIR SINE MIR -75 187 8 2390 96 0 0 chr3 60676425 60676717 -157360441 - AluSq SINE Alu -21 292 1 226 308 77 10 chr3 60676994 60677098 -157360060 + L2 LINE L2 291 401 -2913 1003 236 197 28 chr3 60677132 60677219 -157359939 - MLT1H LTR MaLR 0 549 478 2367 92 3 32 chr3 60677219 60677534 -157359624 - AluSp SINE Alu -7 306 1 1003 236 197 28 chr3 60677534 60677873 -157359285 - MLT1H LTR MaLR -71 478 51 1982 160 0 0 chr3 60678044 60678338 -157358820 - AluSx SINE Alu -18 294 1 348 164 0 29 chr3 60678718 60678822 -157358336 + (TCCA)n Simple_repeat Simple_repeat 1 101 0 341 271 288 14 chr3 60678834 60679115 -157358043 - L2 LINE L2 -36 3277 2920 342 326 169 6 chr3 60679548 60679720 -157357438 - L2 LINE L2 0 3272 3073 2412 99 3 0 chr3 60680569 60680872 -157356286 + AluSp SINE Alu 2 305 -8 2943 219 81 20 chr3 60680949 60681378 -157355780 - L1ME1 LINE L1 -15 6151 5749 2143 103 31 3 chr3 60681378 60681668 -157355490 + AluSg SINE Alu 4 301 -9 2943 219 81 20 chr3 60681668 60682045 -157355113 - L1ME1 LINE L1 -417 5749 5296 * 4513 218 70 42 chr3 60682037 60682060 -157355098 - L1MD2 LINE L1 -413 6364 6343 2469 66 0 3 chr3 60682060 60682362 -157354796 + AluY SINE Alu 1 301 -10 4513 218 70 42 chr3 60682362 60683091 -157354067 - L1MD2 LINE L1 -434 6343 5636 2334 88 20 0 chr3 60683091 60683386 -157353772 - AluSp SINE Alu -12 301 1 4513 218 70 42 chr3 60683386 60684546 -157352612 - L1MD2 LINE L1 -1141 5636 4510 2364 91 3 0 chr3 60684546 60684843 -157352315 - AluSg1 SINE Alu -11 298 1 4513 218 70 42 chr3 60684843 60684906 -157352252 - L1MD2 LINE L1 -2267 4510 4450 2328 113 7 0 chr3 60684906 60685208 -157351950 - AluSx SINE Alu -8 304 1 4513 218 70 42 chr3 60685208 60685221 -157351937 - L1MD2 LINE L1 -2327 4450 4439 2108 118 4 0 chr3 60685221 60685529 -157351629 - AluSx SINE Alu 0 309 1 4513 218 70 42 chr3 60685529 60685937 -157351221 - L1MD2 LINE L1 -2338 4439 3896 1512 176 71 20 chr3 60685937 60686232 -157350926 - AluJo SINE Alu -2 310 1 277 108 0 0 chr3 60686234 60686271 -157350887 + Alu SINE Alu 6 42 -261 3048 168 57 49 chr3 60686276 60687046 -157350112 - L1MD2 LINE L1 -4818 1746 940 1897 164 17 3 chr3 60687046 60687344 -157349814 + AluJo SINE Alu 1 302 -10 3048 168 57 49 chr3 60687344 60687438 -157349720 - L1MD2 LINE L1 -5624 940 848 1437 178 82 11 chr3 60687439 60687720 -157349438 - AluJb SINE Alu -11 301 1 440 207 0 110 chr3 60687736 60687900 -157349258 - L1ME1 LINE L1 -123 6112 5967 770 117 0 0 chr3 60687904 60688024 -157349134 - L1MA4 LINE L1 -5 6295 6176 1926 106 35 29 chr3 60688027 60688299 -157348859 + L1MA4 LINE L1 5841 6117 -183 2263 109 0 10 chr3 60688299 60688602 -157348556 + AluSx SINE Alu 1 300 -12 1926 106 35 29 chr3 60688602 60688669 -157348489 + L1MA4 LINE L1 6117 6182 -118 1858 53 40 0 chr3 60688669 60688894 -157348264 + AluY SINE Alu 1 234 -77 2346 67 0 27 chr3 60688964 60689264 -157347894 - AluSc SINE Alu -17 292 1 1863 218 43 37 chr3 60689292 60689802 -157347356 - L1ME1 LINE L1 -306 5929 5417 905 249 106 0 chr3 60689792 60690037 -157347121 - L1ME1 LINE L1 -6123 273 3 * 3587 226 55 93 chr3 60690081 60691015 -157346143 - L1MDb LINE L1 -3863 2217 1249 186 43 0 0 chr3 60691015 60691038 -157346120 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 3587 226 55 93 chr3 60691038 60691423 -157345735 - L1MDb LINE L1 -4831 1249 851 2420 57 3 23 chr3 60691423 60691723 -157345435 - AluY SINE Alu -16 295 2 3587 226 55 93 chr3 60691723 60691887 -157345271 - L1MDb LINE L1 -5229 851 682 2270 116 0 7 chr3 60691887 60692190 -157344968 + AluSq SINE Alu 1 301 -12 3587 226 55 93 chr3 60692190 60692516 -157344642 - L1MDb LINE L1 -5398 682 448 3566 106 57 35 chr3 60692592 60693187 -157343971 - MER4B LTR ERV1 0 610 3 264 222 139 83 chr3 60693189 60693419 -157343739 - L1MDb LINE L1 -5644 426 184 2430 87 7 0 chr3 60693768 60694078 -157343080 - AluSp SINE Alu -1 312 1 335 282 73 16 chr3 60694078 60694192 -157342966 - L1MDb LINE L1 -5940 130 7 392 200 26 0 chr3 60694289 60694388 -157342770 - L1MEc LINE L1 -4633 1887 1649 3315 200 66 39 chr3 60694401 60694583 -157342575 - L1ME2 LINE L1 -13 6151 5975 2344 81 3 29 chr3 60694583 60694891 -157342267 - AluSp SINE Alu -13 300 1 3315 200 66 39 chr3 60694891 60694930 -157342228 - L1ME2 LINE L1 -189 5975 5939 1609 153 24 64 chr3 60694930 60695088 -157342070 - AluJb SINE Alu -21 291 149 2155 127 7 7 chr3 60695088 60695388 -157341770 - AluSq SINE Alu -9 304 5 1609 153 24 64 chr3 60695388 60695524 -157341634 - AluJb SINE Alu -163 149 9 3315 200 66 39 chr3 60695524 60696255 -157340903 - L1ME2 LINE L1 -225 5939 5229 2645 64 0 0 chr3 60696255 60696566 -157340592 - AluY SINE Alu 0 311 1 3315 200 66 39 chr3 60696566 60696623 -157340535 - L1ME2 LINE L1 -935 5229 5175 1929 139 3 24 chr3 60696623 60696918 -157340240 - AluJb SINE Alu -22 290 2 3315 200 66 39 chr3 60696918 60697212 -157339946 - L1ME2 LINE L1 -989 5175 4811 195 297 78 16 chr3 60697322 60697450 -157339708 + L2 LINE L2 1758 1893 -1421 1359 103 35 0 chr3 60697593 60697796 -157339362 - MER4E LTR ERV1 -569 210 1 200 336 58 10 chr3 60698027 60698131 -157339027 - MIR SINE MIR -77 131 23 334 307 43 7 chr3 60698751 60698891 -157338267 + MER117 DNA MER1_type 4 148 -49 1100 183 5 0 chr3 60699630 60699827 -157337331 - L1 LINE L1 -1916 4230 4033 1848 154 129 29 chr3 60699828 60700157 -157337001 - LTR47A LTR ERVL 0 452 73 1962 128 57 35 chr3 60700157 60700524 -157336634 - THE1C LTR MaLR 0 375 1 1848 154 129 29 chr3 60700524 60700604 -157336554 - LTR47A LTR ERVL -379 73 2 275 225 0 0 chr3 60700608 60700679 -157336479 - L1 LINE L1 -2116 4030 3960 2354 106 0 0 chr3 60700688 60700990 -157336168 - AluY SINE Alu -9 302 1 314 114 173 83 chr3 60700990 60701184 -157335974 - MER61A-int LTR ERV1 -4651 2107 1801 246 44 22 22 chr3 60701250 60701295 -157335863 - L1PA2 LINE L1 -2 6153 6109 8185 69 38 19 chr3 60701449 60701795 -157335363 - MER61A-int LTR ERV1 -2561 2656 2318 2245 108 10 0 chr3 60701795 60702092 -157335066 + AluSc SINE Alu 1 300 -9 8185 69 38 19 chr3 60702092 60702942 -157334216 - MER61A-int LTR ERV1 -2899 2318 1433 303 71 0 0 chr3 60702942 60702984 -157334174 + (CA)n Simple_repeat Simple_repeat 1 42 0 8185 69 38 19 chr3 60702984 60703011 -157334147 - MER61A-int LTR ERV1 -3784 1433 1408 3425 178 26 29 chr3 60703069 60703771 -157333387 - MER61A-int LTR ERV1 -4517 700 1 2116 133 68 3 chr3 60703771 60704093 -157333065 - MER61A LTR ERV1 0 343 1 354 278 28 9 chr3 60704099 60704207 -157332951 - L1MCc LINE L1 -4367 2574 2465 9218 83 2 13 chr3 60704309 60704753 -157332405 + MER61-int LTR ERV1 2899 3346 -1871 2321 103 0 3 chr3 60704753 60705055 -157332103 + AluSc SINE Alu 1 301 -8 9218 83 2 13 chr3 60705055 60705893 -157331265 + MER61-int LTR ERV1 3346 4167 -1050 451 283 71 73 chr3 60706044 60707077 -157330081 + L1M4 LINE L1 2670 3701 -2445 1764 178 27 3 chr3 60707077 60707409 -157329749 - MER58B DNA MER1_type -1 340 1 451 283 71 73 chr3 60707409 60707702 -157329456 + L1M4 LINE L1 3701 3993 -2153 311 266 127 17 chr3 60708074 60708247 -157328911 - L1M4 LINE L1 -1863 4283 4092 412 244 52 75 chr3 60708256 60708454 -157328704 - L1MCc LINE L1 -4620 2321 2120 2347 99 0 3 chr3 60708454 60708758 -157328400 - AluY SINE Alu -6 305 3 2170 135 0 0 chr3 60708762 60709058 -157328100 - AluSx SINE Alu -16 296 1 2270 115 3 0 chr3 60709066 60709361 -157327797 - AluSx SINE Alu -6 306 11 412 244 52 75 chr3 60709361 60709559 -157327599 - L1MCc LINE L1 -4831 2110 1909 478 261 109 0 chr3 60709559 60709678 -157327480 + FLAM_A SINE Alu 2 133 0 412 244 52 75 chr3 60709678 60709967 -157327191 - L1MCc LINE L1 -5032 1909 1274 504 0 0 0 chr3 60710218 60710274 -157326884 + (TG)n Simple_repeat Simple_repeat 1 56 0 699 115 0 10 chr3 60710789 60710893 -157326265 - AluJb SINE Alu -9 303 201 1709 296 112 20 chr3 60710999 60711791 -157325367 - HERVL LTR ERVL -2841 2813 1949 1022 326 69 57 chr3 60711830 60712364 -157324794 - HERVL LTR ERVL -3135 1861 1312 1978 159 0 6 chr3 60712364 60712678 -157324480 - AluSx SINE Alu 0 312 1 1022 326 69 57 chr3 60712678 60712969 -157324189 - HERVL LTR ERVL -3684 1312 1026 530 320 31 23 chr3 60712966 60713222 -157323936 + ERVL LTR ERVL 4340 4597 -1167 * 324 164 14 55 chr3 60713335 60713408 -157323750 - AluJ/FRAM SINE Alu -1 301 232 1560 231 50 52 chr3 60713508 60713685 -157323473 - MER65-int LTR ERV1 -3873 998 822 1958 150 10 0 chr3 60713685 60713991 -157323167 + AluJb SINE Alu 2 310 -2 1560 231 50 52 chr3 60713991 60714290 -157322868 - MER65-int LTR ERV1 -4049 822 523 600 252 33 85 chr3 60714366 60714672 -157322486 - MER65-int LTR ERV1 -4521 350 61 803 327 111 6 chr3 60714756 60715242 -157321916 - L2 LINE L2 -1979 1335 799 826 189 26 0 chr3 60715254 60715407 -157321751 - MER3 DNA MER1_type -52 157 1 201 295 158 0 chr3 60715411 60715550 -157321608 - L2 LINE L2 -2511 803 643 5596 84 1 11 chr3 60716208 60716943 -157320215 - HERV9 LTR ERV1 -3592 4807 4080 14202 89 5 8 chr3 60716950 60718844 -157318314 - HERV9 LTR ERV1 -5260 3139 1251 5259 117 5 12 chr3 60718944 60719704 -157317454 - HERV9 LTR ERV1 -7604 795 41 6375 80 14 2 chr3 60719718 60720535 -157316623 - LTR12 LTR ERV1 0 826 1 6398 223 56 25 chr3 60720535 60722578 -157314580 - L1MDa LINE L1 -2115 4425 2337 1101 173 49 68 chr3 60722716 60722982 -157314176 + MER67A LTR ERV1 283 543 0 1358 254 59 45 chr3 60723050 60723656 -157313502 + L1MDb LINE L1 793 1407 -5002 943 172 121 0 chr3 60723778 60723952 -157313206 - MER7A DNA MER2_type -153 193 1 5213 227 65 17 chr3 60724021 60725442 -157311716 + L1M4 LINE L1 3807 5307 -839 2648 165 50 12 chr3 60725442 60725938 -157311220 + MLT2B2 LTR ERVL 1 515 0 5213 227 65 17 chr3 60725938 60726040 -157311118 + L1M4 LINE L1 5307 5403 -743 10440 191 47 31 chr3 60726057 60726453 -157310705 - Cheshire DNA MER1_type -3 2417 2029 2721 114 28 21 chr3 60726453 60726875 -157310283 + MSTA LTR MaLR 1 425 -3 10440 191 47 31 chr3 60726875 60728048 -157309110 - Cheshire DNA MER1_type -391 2029 798 2270 106 7 0 chr3 60728048 60728349 -157308809 + AluSx SINE Alu 1 303 -9 10440 191 47 31 chr3 60728349 60729056 -157308102 - Cheshire DNA MER1_type -1622 798 104 287 157 71 14 chr3 60729239 60729309 -157307849 + L1MA9 LINE L1 6238 6311 -1 835 259 97 48 chr3 60729427 60729633 -157307525 - L1MC4 LINE L1 -1275 6767 6541 2088 110 11 0 chr3 60729633 60729937 -157307221 - AluSq SINE Alu 0 307 1 835 259 97 48 chr3 60729937 60730019 -157307139 - L1MC4 LINE L1 -1501 6541 6464 2118 107 33 0 chr3 60731435 60731734 -157305424 - AluSq SINE Alu 0 313 5 547 291 110 40 chr3 60732285 60732766 -157304392 + HAL1 LINE L1 1126 1640 -867 1930 155 3 0 chr3 60732934 60733230 -157303928 - AluJb SINE Alu -15 297 1 689 258 35 85 chr3 60733470 60733869 -157303289 - MLT1J LTR MaLR -33 478 100 647 111 0 0 chr3 60734170 60734260 -157302898 + AluJ/FLAM SINE Alu 2 91 -221 2155 70 4 18 chr3 60735332 60735604 -157301554 - AluY SINE Alu -7 304 37 943 167 6 6 chr3 60736264 60736432 -157300726 - LTR2 LTR ERV1 0 449 282 360 164 0 0 chr3 60736432 60736493 -157300665 - LTR2 LTR ERV1 -123 326 266 361 288 22 58 chr3 60736525 60736664 -157300494 - LTR2 LTR ERV1 -315 134 1 1648 145 0 107 chr3 60737185 60737523 -157299635 - AluJb SINE Alu 0 302 1 2947 183 27 2 chr3 60737532 60738083 -157299075 - L1M4 LINE L1 -1103 5043 4479 7377 57 4 44 chr3 60738083 60739812 -157297346 - SVA Other Other -683 1386 1 347 0 0 23 chr3 60739818 60739862 -157297296 + (GGGAGA)n Simple_repeat Simple_repeat 1 43 0 223 296 43 0 chr3 60739948 60740063 -157297095 + L2 LINE L2 3150 3269 -3 1230 223 185 2 chr3 60740303 60740698 -157296460 - L1M4 LINE L1 -1652 4494 4028 6392 79 8 2 chr3 60740698 60741519 -157295639 - LTR12 LTR ERV1 0 826 1 5956 92 8 1 chr3 60741519 60742310 -157294848 - HERV9 LTR ERV1 0 8399 7604 1990 85 0 27 chr3 60742289 60742720 -157294438 - Harlequin LTR ERV1 -5156 1740 1275 * 1467 52 0 0 chr3 60742707 60742881 -157294277 - Harlequin LTR ERV1 -7577 1049 876 * 1016 82 0 0 chr3 60742981 60743103 -157294055 - AluY SINE Alu -189 122 1 1290 120 0 11 chr3 60743105 60743288 -157293870 - THE1B LTR MaLR -183 181 1 361 305 43 0 chr3 60743890 60744031 -157293127 - L1MC4a LINE L1 -1927 5881 5735 2302 113 0 0 chr3 60744041 60744351 -157292807 - AluSx SINE Alu -2 310 1 2108 162 105 59 chr3 60745034 60745558 -157291600 - LTR10A LTR ERV1 -61 548 1 12411 139 31 38 chr3 60745560 60749806 -157287352 - Harlequin LTR ERV1 -3 6646 723 293 283 43 0 chr3 60749817 60749909 -157287249 - LTR10A-int LTR ERV1 -5579 1070 975 1083 210 61 32 chr3 60750191 60750501 -157286657 - LTR10A-int LTR ERV1 -6330 319 1 1926 168 109 24 chr3 60750510 60750971 -157286187 - LTR10A LTR ERV1 -61 548 1 312 188 0 0 chr3 60751200 60751269 -157285889 + (TG)n Simple_repeat Simple_repeat 1 69 0 3010 141 62 47 chr3 60751370 60751922 -157285236 - MER4E LTR ERV1 0 779 220 1193 238 81 77 chr3 60752107 60752587 -157284571 + LTR16C LTR ERVL 5 486 -5 901 300 52 13 chr3 60752632 60752800 -157284358 + L1MC4 LINE L1 6484 6644 -1246 2207 104 0 7 chr3 60752800 60753124 -157284034 + AluSg SINE Alu 1 310 0 901 300 52 13 chr3 60753124 60753438 -157283720 + L1MC4 LINE L1 6644 7084 -806 28 0 0 0 chr3 60753448 60753476 -157283682 + AT_rich Low_complexity Low_complexity 1 28 0 428 218 30 55 chr3 60753525 60753690 -157283468 + L1MC5 LINE L1 7015 7175 -786 305 161 111 25 chr3 60753738 60753819 -157283339 + L1MC5 LINE L1 7820 7907 -54 2076 266 81 96 chr3 60753945 60755168 -157281990 + L1ME LINE L1 43 1208 -4910 1883 152 32 23 chr3 60755168 60755477 -157281681 + AluJb SINE Alu 1 312 0 2076 266 81 96 chr3 60755477 60756453 -157280705 + L1ME LINE L1 1208 2198 -3920 441 263 19 19 chr3 60756455 60756611 -157280547 + LTR23 LTR ERV1 282 437 0 419 174 109 0 chr3 60756611 60756703 -157280455 - L1MC/D LINE L1 -423 5819 5718 1068 190 17 47 chr3 60756744 60756976 -157280182 - MER21B LTR ERV1 -41 822 598 861 220 133 0 chr3 60757076 60757362 -157279796 + MER5C DNA MER1_type 1 324 0 310 278 88 51 chr3 60759769 60759985 -157277173 - L1MC/D LINE L1 -914 5232 5009 4328 160 37 3 chr3 60760011 60760773 -157276385 + L1P LINE L1 3284 4071 -2075 340 285 160 19 chr3 60760873 60761136 -157276022 - HAL1 LINE L1 -178 2329 2030 397 289 23 16 chr3 60761219 60761347 -157275811 - HAL1 LINE L1 -635 1872 1744 468 252 0 0 chr3 60761348 60761459 -157275699 - MLT2E LTR ERVL -5 623 513 1091 181 35 40 chr3 60761498 60761725 -157275433 - AluJb SINE Alu 0 312 87 2221 105 79 69 chr3 60761769 60762187 -157274971 + MSTA LTR MaLR 7 428 0 881 226 47 57 chr3 60762207 60762525 -157274633 - HAL1 LINE L1 -1035 1472 1158 377 309 59 7 chr3 60762527 60762679 -157274479 + MLT1H LTR MaLR 77 236 -313 496 260 41 83 chr3 60762683 60762830 -157274328 - HAL1 LINE L1 -1404 1103 951 396 0 0 0 chr3 60762830 60762874 -157274284 + (TG)n Simple_repeat Simple_repeat 2 45 0 1975 119 0 3 chr3 60762874 60763159 -157273999 - AluSx SINE Alu -28 284 1 496 260 41 83 chr3 60763159 60763252 -157273906 - HAL1 LINE L1 -1554 953 872 730 294 20 29 chr3 60763287 60763532 -157273626 - HAL1 LINE L1 -1879 628 386 249 260 49 16 chr3 60763775 60763898 -157273260 - L1MC/D LINE L1 -1542 4604 4478 766 245 98 52 chr3 60763899 60764225 -157272933 + MLT1J LTR MaLR 163 503 -8 501 267 59 7 chr3 60764243 60764378 -157272780 + MER5A DNA MER1_type 1 142 -47 744 216 226 35 chr3 60764698 60764985 -157272173 - MLT1K LTR MaLR -46 542 201 195 42 0 0 chr3 60765371 60765395 -157271763 + (CAGAGA)n Simple_repeat Simple_repeat 4 27 0 584 208 0 25 chr3 60765827 60765947 -157271211 + L1MB5 LINE L1 5451 5567 -613 2055 183 49 7 chr3 60765949 60766258 -157270900 + L1MB5 LINE L1 5695 6029 -145 2409 112 22 25 chr3 60766258 60766623 -157270535 - THE1B LTR MaLR 0 364 1 2055 183 49 7 chr3 60766623 60766744 -157270414 + L1MB5 LINE L1 6029 6143 -31 315 0 0 0 chr3 60766805 60766840 -157270318 + (CA)n Simple_repeat Simple_repeat 1 35 0 2275 95 0 0 chr3 60766840 60767145 -157270013 - AluSg SINE Alu -5 305 1 839 243 78 42 chr3 60767214 60767548 -157269610 - MER74B LTR ERVL -82 540 195 967 222 13 4 chr3 60767559 60767793 -157269365 + MER46A DNA MER2_type 1 236 0 336 323 104 0 chr3 60767822 60767986 -157269172 - L2 LINE L2 -32 3281 3101 290 305 99 0 chr3 60768118 60768259 -157268899 - L2 LINE L2 -440 2874 2720 292 255 69 10 chr3 60769174 60769276 -157267882 + MIR SINE MIR 40 147 -61 428 271 0 8 chr3 60769910 60770032 -157267126 - MER94 DNA DNA -11 123 3 2424 253 42 24 chr3 60770960 60771525 -157265633 + L1ME2 LINE L1 5326 5910 -254 2355 68 0 3 chr3 60771525 60771832 -157265326 - AluY SINE Alu -5 306 1 2424 253 42 24 chr3 60771832 60772044 -157265114 + L1ME2 LINE L1 5910 6117 -47 291 243 58 39 chr3 60772325 60772428 -157264730 - Cheshire DNA MER1_type -2315 105 1 2730 93 26 19 chr3 60773091 60773508 -157263650 - L1PA13 LINE L1 -7 6156 5737 621 63 0 0 chr3 60773509 60773588 -157263570 + L1PA13 LINE L1 5653 5731 -437 1745 192 46 61 chr3 60773898 60774372 -157262786 + MLT1C LTR MaLR 1 467 0 1968 154 0 0 chr3 60774373 60774754 -157262404 + AluSx SINE Alu 1 381 0 595 241 66 6 chr3 60774867 60775033 -157262125 - FRAM SINE Alu 0 40 1 262 314 169 17 chr3 60775299 60775471 -157261687 - L2 LINE L2 -2 3270 3073 485 229 56 103 chr3 60776357 60776491 -157260667 - L1MB8 LINE L1 -2 6176 6037 1753 141 79 7 chr3 60776491 60776782 -157260376 + AluJb SINE Alu 1 312 0 485 229 56 103 chr3 60776782 60776984 -157260174 - L1MB8 LINE L1 -141 6037 5852 190 275 120 78 chr3 60777064 60777206 -157259952 + MIR SINE MIR 4 151 -111 264 267 69 30 chr3 60779487 60779588 -157257570 - MIR SINE MIR -63 145 41 399 232 73 40 chr3 60780217 60780368 -157256790 + MER117 DNA MER1_type 5 160 -37 429 20 0 0 chr3 60780461 60780511 -157256647 + (TTCA)n Simple_repeat Simple_repeat 4 53 0 1301 201 44 15 chr3 60780512 60780786 -157256372 - AluJo SINE Alu -30 282 1 3961 90 21 7 chr3 60780811 60781391 -157255767 - L1MB3 LINE L1 -3 6249 5662 1448 154 0 0 chr3 60781393 60781626 -157255532 - 7SLRNA srpRNA srpRNA -2 318 86 2695 194 34 18 chr3 60781626 60782029 -157255129 - L1MB3 LINE L1 -601 5651 5256 1914 115 42 0 chr3 60782029 60782315 -157254843 - AluSx SINE Alu -14 298 1 2695 194 34 18 chr3 60782315 60782824 -157254334 - L1MB3 LINE L1 -996 5256 4725 225 178 0 22 chr3 60782824 60782839 -157254319 + Alu SINE Alu 125 138 -165 236 171 0 0 chr3 60782839 60782874 -157254284 + Alu SINE Alu 4 38 -264 1171 234 156 38 chr3 60784867 60785315 -157251843 + MLT1D LTR MaLR 3 503 -2 2242 88 0 10 chr3 60785324 60785630 -157251528 - AluSq SINE Alu -10 303 1 359 184 92 0 chr3 60785645 60785721 -157251437 + MLT1K LTR MaLR 500 582 -6 1169 191 90 74 chr3 60785942 60786241 -157250917 + MLT1A1 LTR MaLR 1 304 -61 265 139 43 38 chr3 60786307 60786369 -157250789 + MLT1A2 LTR MaLR 323 374 0 2973 220 43 15 chr3 60787196 60787865 -157249293 - MER76 LTR ERV 0 688 1 2522 250 59 38 chr3 60789094 60790329 -157246829 - L1MB3 LINE L1 -2948 3267 2059 1421 135 9 75 chr3 60790369 60790703 -157246455 - MER33 DNA MER1_type -12 312 1 413 290 141 24 chr3 60790858 60791148 -157246010 - L1MEc LINE L1 -4576 1820 1497 * 438 274 90 67 chr3 60791144 60791623 -157245535 - L1MEc LINE L1 -5079 1126 637 1928 154 6 3 chr3 60792629 60792940 -157244218 + AluJb SINE Alu 1 312 0 1643 124 52 31 chr3 60793644 60793934 -157243224 + AluSx SINE Alu 1 296 -16 2377 111 5 53 chr3 60794320 60794513 -157242645 - THE1B LTR MaLR -2 362 194 2174 98 3 3 chr3 60794513 60794808 -157242350 - AluSq SINE Alu -18 295 1 2377 111 5 53 chr3 60794808 60794994 -157242164 - THE1B LTR MaLR -170 194 1 12181 86 9 1 chr3 60794994 60796561 -157240597 - THE1B-int LTR MaLR 0 1580 1 1205 101 20 35 chr3 60796561 60796753 -157240405 - THE1B LTR MaLR 0 364 175 2325 74 0 7 chr3 60796753 60797051 -157240107 - AluY SINE Alu -15 296 1 1126 233 9 5 chr3 60797171 60797390 -157239768 - MER58A DNA MER1_type -3 221 2 506 306 61 10 chr3 60797428 60797624 -157239534 - L1M4 LINE L1 -3821 2325 2120 2590 171 93 25 chr3 60798045 60798571 -157238587 - REP3 LTR ERV 0 562 1 942 248 223 12 chr3 60799505 60799908 -157237250 + L2 LINE L2 2826 3313 0 389 288 64 0 chr3 60800056 60800181 -157236977 - L2 LINE L2 -1 3312 3180 285 281 0 12 chr3 60800249 60800331 -157236827 + Charlie7 DNA MER1_type 337 417 -2195 760 235 59 0 chr3 60800417 60800638 -157236520 + Charlie7 DNA MER1_type 1802 2035 -577 798 258 36 8 chr3 60800738 60800986 -157236172 + Charlie7 DNA MER1_type 2044 2298 -314 654 267 29 3 chr3 60801154 60801349 -157235809 + L1ME LINE L1 5466 5664 -457 315 270 153 25 chr3 60801369 60801532 -157235626 + L1M4 LINE L1 3656 3839 -2307 238 336 33 8 chr3 60801532 60801654 -157235504 - LTR67 LTR ERVL -15 542 418 299 342 27 0 chr3 60801747 60801858 -157235300 - LTR67 LTR ERVL -335 222 109 2480 187 143 47 chr3 60801954 60802292 -157234866 + LTR48 LTR ERV1 1 259 -336 2234 85 0 0 chr3 60802292 60802605 -157234553 + AluSg SINE Alu 1 313 0 2480 187 143 47 chr3 60802605 60802945 -157234213 + LTR48 LTR ERV1 259 565 -30 579 298 48 107 chr3 60803023 60803090 -157234068 + L1M4 LINE L1 3839 3908 -2238 4195 124 11 67 chr3 60803090 60803822 -157233336 + LTR8 LTR ERV1 1 691 0 579 298 48 107 chr3 60803822 60804277 -157232881 + L1M4 LINE L1 3908 4330 -1816 423 172 172 20 chr3 60804518 60804617 -157232541 + FRAM SINE Alu 20 133 -43 238 284 88 27 chr3 60804645 60804793 -157232365 + L1MC4a LINE L1 4067 4223 -1923 23 0 0 0 chr3 60804823 60804846 -157232312 + AT_rich Low_complexity Low_complexity 1 23 0 874 287 119 60 chr3 60804852 60805321 -157231837 + L1MC4a LINE L1 4232 4763 -1383 2127 105 10 0 chr3 60805321 60805616 -157231542 + AluSx SINE Alu 12 309 -3 874 287 119 60 chr3 60805616 60805892 -157231266 + L1MC4a LINE L1 4763 5021 -1125 1838 141 56 6 chr3 60806186 60806506 -157230652 + MER1B DNA MER1_type 1 336 -1 2339 119 0 0 chr3 60807016 60807327 -157229831 + AluY SINE Alu 1 311 0 657 303 74 65 chr3 60807471 60807530 -157229628 + L1MC4a LINE L1 5298 5355 -2453 474 43 21 170 chr3 60807530 60807584 -157229574 - MADE1 DNA Mariner 0 80 44 2334 109 0 0 chr3 60807584 60807877 -157229281 + AluSx SINE Alu 1 293 -19 474 43 21 170 chr3 60807877 60807916 -157229242 - MADE1 DNA Mariner -36 44 1 657 303 74 65 chr3 60807916 60808424 -157228734 + L1MC4a LINE L1 5355 5870 -1938 11165 104 4 5 chr3 60809635 60811205 -157225953 - THE1A-int LTR MaLR -11 1569 1 2458 83 0 80 chr3 60811205 60811591 -157225567 - THE1A LTR MaLR 0 355 1 315 209 0 0 chr3 60812109 60812176 -157224982 + L1MB5 LINE L1 1708 1774 -4610 * 11155 200 36 21 chr3 60812173 60814025 -157223133 + L1MB5 LINE L1 2573 4396 -2014 1862 150 47 7 chr3 60814025 60814325 -157222833 + AluJb SINE Alu 1 312 0 11155 200 36 21 chr3 60814325 60816134 -157221024 + L1MB5 LINE L1 4396 6288 -122 639 294 52 74 chr3 60816668 60817249 -157219909 + L2 LINE L2 2206 2773 -541 298 322 131 37 chr3 60817285 60817530 -157219628 + L2 LINE L2 3004 3271 -1 2173 105 10 3 chr3 60818440 60818734 -157218424 - AluSx SINE Alu -16 296 1 2080 110 4 0 chr3 60819277 60819541 -157217617 + AluSx SINE Alu 30 294 -18 1929 169 3 6 chr3 60819573 60819886 -157217272 + AluSx SINE Alu 1 312 0 8747 91 2 4 chr3 60820536 60821739 -157215419 + HERV9 LTR ERV1 1938 3137 -5262 293 181 36 12 chr3 60821938 60822026 -157215132 + L1MC4 LINE L1 7901 8035 -7 369 310 172 31 chr3 60822069 60822424 -157214734 + L1MC4a LINE L1 5537 5941 -1867 2214 104 0 27 chr3 60822425 60822722 -157214436 + AluSx SINE Alu 1 289 -23 2273 93 0 0 chr3 60822767 60823075 -157214083 + AluSg SINE Alu 1 308 0 1912 61 0 13 chr3 60823076 60823306 -157213852 + AluY SINE Alu 1 227 -84 1452 147 69 4 chr3 60823407 60823638 -157213520 - AluJb SINE Alu -55 257 12 250 279 47 54 chr3 60824046 60824175 -157212983 + MER5B DNA MER1_type 49 176 -2 2361 90 3 3 chr3 60824494 60824795 -157212363 + AluSc SINE Alu 1 301 -8 2396 98 0 0 chr3 60825202 60825509 -157211649 - AluSx SINE Alu -5 307 1 683 282 58 12 chr3 60826046 60826287 -157210871 - MIR SINE MIR 0 262 11 1578 138 3 94 chr3 60826487 60826784 -157210374 - AluJb SINE Alu -31 281 12 250 273 224 38 chr3 60826791 60826974 -157210184 - MIR SINE MIR -43 219 3 1458 80 6 0 chr3 60827372 60827548 -157209610 + AluSp SINE Alu 1 177 -136 962 158 25 17 chr3 60829246 60829443 -157207715 + LTR12 LTR ERV1 292 478 -236 * 11901 111 7 17 chr3 60829429 60831216 -157205942 + HERV9 LTR ERV1 58 1825 -6574 651 129 11 0 chr3 60839349 60839442 -157197716 + 5S rRNA rRNA 1 94 -27 4657 137 28 67 chr3 60839548 60839765 -157197393 + L1MA9 LINE L1 5132 5356 -956 2270 128 3 0 chr3 60839765 60840069 -157197089 - AluSx SINE Alu -1 311 7 4657 137 28 67 chr3 60840069 60840268 -157196890 + L1MA9 LINE L1 5356 5561 -751 2318 98 10 0 chr3 60840268 60840574 -157196584 + AluSx SINE Alu 1 309 -3 4657 137 28 67 chr3 60840574 60841237 -157195921 + L1MA9 LINE L1 5561 6185 -127 313 238 48 67 chr3 60841238 60841343 -157195815 + L1 LINE L1 4264 4366 -1780 2346 110 0 0 chr3 60841367 60841676 -157195482 + AluY SINE Alu 1 309 -2 1019 113 43 0 chr3 60841690 60841831 -157195327 + AluSq SINE Alu 43 189 -124 195 69 0 0 chr3 60841980 60842009 -157195149 + (CTCG)n Simple_repeat Simple_repeat 2 30 0 209 29 0 57 chr3 60842053 60842088 -157195070 + (CCCCG)n Simple_repeat Simple_repeat 2 34 0 192 154 0 62 chr3 60845291 60845356 -157191802 + GA-rich Low_complexity Low_complexity 4 64 0 980 219 120 29 chr3 60845650 60846024 -157191134 + HAL1b LINE L1 941 1348 0 267 189 0 0 chr3 60846174 60846227 -157190931 + (CA)n Simple_repeat Simple_repeat 1 53 0 359 123 12 0 chr3 60848551 60848632 -157188526 + (CA)n Simple_repeat Simple_repeat 1 82 0 318 67 0 0 chr3 60849041 60849086 -157188072 + (CA)n Simple_repeat Simple_repeat 2 46 0 354 80 0 0 chr3 60850419 60850469 -157186689 + (GGGA)n Simple_repeat Simple_repeat 1 50 0 1945 132 41 14 chr3 60851659 60851954 -157185204 + AluJb SINE Alu 1 303 -9 2034 128 3 38 chr3 60851960 60852280 -157184878 + AluSq SINE Alu 5 313 0 2095 113 0 80 chr3 60853065 60853391 -157183767 + AluSx SINE Alu 2 301 -11 266 255 41 51 chr3 60853595 60853693 -157183465 - MIR3 SINE MIR -25 183 87 384 261 29 0 chr3 60853809 60853947 -157183211 + L1M4 LINE L1 3181 3322 -2824 323 296 0 0 chr3 60853951 60854083 -157183075 + L1M4 LINE L1 3365 3496 -2650 300 180 0 0 chr3 60854083 60854133 -157183025 - AluJo SINE Alu -13 289 240 573 175 33 42 chr3 60854137 60854257 -157182901 - AluJo SINE Alu -109 203 85 1593 219 41 71 chr3 60854257 60854640 -157182518 + L1M4 LINE L1 3478 3917 -2229 2039 132 0 0 chr3 60854640 60854921 -157182237 + AluSx SINE Alu 32 312 0 1593 219 41 71 chr3 60854921 60855194 -157181964 + L1M4 LINE L1 3917 4197 -1949 781 213 32 43 chr3 60855198 60855480 -157181678 + L1M4 LINE L1 4138 4416 -1730 467 204 168 0 chr3 60855465 60855578 -157181580 + L1PB4 LINE L1 6021 6152 -4 * 471 246 28 0 chr3 60855614 60855756 -157181402 + L1M4 LINE L1 4982 5127 -1019 1385 173 11 15 chr3 60855783 60856055 -157181103 + L1MC2 LINE L1 6052 6322 -22 467 290 84 82 chr3 60856195 60856565 -157180593 + L1M3c LINE L1 493 1642 -5854 2411 216 28 24 chr3 60857024 60857844 -157179314 + L1M3c LINE L1 2154 2975 -4521 711 233 97 10 chr3 60857948 60858154 -157179004 + MER93a LTR ERV1 61 284 -118 2170 104 7 3 chr3 60858157 60858465 -157178693 - AluY SINE Alu -2 309 1 417 120 0 40 chr3 60858576 60858639 -157178519 + FLAM_C SINE Alu 69 130 -182 1478 143 108 35 chr3 60858639 60858925 -157178233 + AluSg SINE Alu 1 307 -3 417 120 0 40 chr3 60858925 60858936 -157178222 + FLAM_C SINE Alu 130 140 -172 1573 246 85 37 chr3 60858944 60859414 -157177744 + L1M3c LINE L1 2905 3351 -4214 1795 132 44 20 chr3 60859414 60859710 -157177448 + AluSx SINE Alu 1 303 -9 1573 246 85 37 chr3 60859710 60860257 -157176901 + L1M3c LINE L1 3351 3976 -3589 323 125 14 0 chr3 60860455 60860527 -157176631 + (CA)n Simple_repeat Simple_repeat 1 73 0 487 316 19 44 chr3 60860564 60860656 -157176502 + MIR SINE MIR 62 155 -107 2178 101 0 13 chr3 60860656 60860962 -157176196 - AluSx SINE Alu -10 302 1 487 316 19 44 chr3 60860962 60861075 -157176083 + MIR SINE MIR 155 262 0 297 191 83 24 chr3 60861064 60861171 -157175987 - MIR SINE MIR -63 145 44 * 184 273 215 35 chr3 60862277 60862449 -157174709 - MIR SINE MIR -34 228 26 305 82 20 0 chr3 60864164 60864213 -157172945 + (TTTC)n Simple_repeat Simple_repeat 1 50 0 879 181 88 0 chr3 60864213 60864373 -157172785 - FAM SINE Alu -1 174 1 275 330 89 0 chr3 60864738 60864850 -157172308 + MIR3 SINE MIR 11 132 -76 227 343 29 7 chr3 60865041 60865178 -157171980 + (TTGGGG)n Simple_repeat Simple_repeat 3 142 0 307 247 12 12 chr3 60868325 60868406 -157168752 + MER94 DNA DNA 39 119 -15 806 114 0 0 chr3 60869030 60869144 -157168014 + FLAM_C SINE Alu 5 118 -25 387 0 0 0 chr3 60869147 60869190 -157167968 + (TC)n Simple_repeat Simple_repeat 2 44 0 279 0 0 0 chr3 60869190 60869221 -157167937 + (TA)n Simple_repeat Simple_repeat 1 31 0 243 0 0 0 chr3 60869220 60869247 -157167911 + (CA)n Simple_repeat Simple_repeat 2 28 0 * 270 224 103 9 chr3 60869248 60869364 -157167794 + L1MC5 LINE L1 7731 7857 -104 703 266 52 26 chr3 60869469 60869740 -157167418 - MLT1J LTR MaLR -2 509 232 2112 106 10 0 chr3 60870386 60870689 -157166469 + AluSq SINE Alu 1 306 -7 1618 174 10 10 chr3 60870696 60870995 -157166163 + AluJb SINE Alu 1 299 -13 12762 205 28 33 chr3 60873454 60875175 -157161983 - BaEV-int LTR ERV1 -455 7330 5563 232 148 0 98 chr3 60875175 60875236 -157161922 + HAL1 LINE L1 1797 1851 -656 12762 205 28 33 chr3 60875236 60876079 -157161079 - BaEV-int LTR ERV1 -2222 5563 4718 4809 235 51 45 chr3 60876188 60876541 -157160617 + L1MCa LINE L1 538 887 -5720 3771 78 8 8 chr3 60876541 60877052 -157160106 + L1PA10 LINE L1 5658 6168 0 4809 235 51 45 chr3 60877052 60877542 -157159616 + L1MCa LINE L1 887 1372 -5235 191 61 30 0 chr3 60877542 60877575 -157159583 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4809 235 51 45 chr3 60877575 60877607 -157159551 + L1MCa LINE L1 1372 1402 -5205 2112 124 3 6 chr3 60877607 60877921 -157159237 + AluSq SINE Alu 1 313 0 4809 235 51 45 chr3 60877921 60878223 -157158935 + L1MCa LINE L1 1402 1701 -4906 2249 78 3 3 chr3 60878223 60878519 -157158639 + AluSc SINE Alu 1 296 -13 4809 235 51 45 chr3 60878519 60879037 -157158121 + L1MCa LINE L1 1701 2459 -4148 325 87 0 0 chr3 60879037 60879083 -157158075 + MADE1 DNA Mariner 35 80 0 4809 235 51 45 chr3 60879083 60879235 -157157923 + L1MCa LINE L1 2459 2609 -3998 677 204 15 29 chr3 60879236 60879373 -157157785 + AluJo SINE Alu 2 136 -176 438 184 36 89 chr3 60879385 60879479 -157157679 + L1MCa LINE L1 2559 2642 -3784 2378 53 0 7 chr3 60879479 60879778 -157157380 - AluY SINE Alu -14 297 1 438 184 36 89 chr3 60879778 60879851 -157157307 + L1MCa LINE L1 2642 2717 -3709 1463 235 65 15 chr3 60879952 60880288 -157156870 - BaEV-int LTR ERV1 -5464 1185 833 5499 48 1 10 chr3 60880306 60880986 -157156172 + L1PA8 LINE L1 5499 6172 0 4118 186 49 15 chr3 60880986 60881022 -157156136 + L1MB3 LINE L1 4739 4772 -1411 1796 142 3 7 chr3 60881022 60881329 -157155829 + AluSx SINE Alu 1 306 0 4118 186 49 15 chr3 60881329 60882321 -157154837 + L1MB3 LINE L1 4772 5729 -454 417 20 0 0 chr3 60882321 60882371 -157154787 + (TA)n Simple_repeat Simple_repeat 1 50 0 4118 186 49 15 chr3 60882371 60882415 -157154743 + L1MB3 LINE L1 5729 5770 -413 2179 90 6 13 chr3 60882415 60882727 -157154431 + AluSp SINE Alu 1 310 -3 4118 186 49 15 chr3 60882727 60882997 -157154161 + L1MB3 LINE L1 5770 6123 -60 283 240 8 8 chr3 60883112 60883233 -157153925 + (CA)n Simple_repeat Simple_repeat 2 122 0 325 276 17 9 chr3 60883256 60883372 -157153786 + (CA)n Simple_repeat Simple_repeat 1 117 0 1001 140 21 11 chr3 60885614 60885800 -157151358 - MER53 DNA DNA -1 188 1 2739 220 108 17 chr3 60887315 60888115 -157149043 - MER69B DNA AcHobo -1303 1223 262 2529 43 0 0 chr3 60888115 60888419 -157148739 + AluY SINE Alu 1 304 -7 2739 220 108 17 chr3 60888419 60888617 -157148541 - MER69B DNA AcHobo -2264 262 84 1446 230 35 12 chr3 60890304 60890726 -157146432 + L1MCa LINE L1 2988 3419 -3007 1889 187 52 20 chr3 60890727 60891128 -157146030 + L1 LINE L1 1658 2071 -4959 1049 242 0 0 chr3 60891138 60891365 -157145793 + AluJo SINE Alu 5 231 -81 9774 179 29 9 chr3 60891447 60892463 -157144695 + L1 LINE L1 3629 4624 -2482 2463 147 43 5 chr3 60892463 60892879 -157144279 + MSTB1 LTR MaLR 1 432 0 9774 179 29 9 chr3 60892879 60893519 -157143639 + L1 LINE L1 4624 5335 -1771 6129 111 63 106 chr3 60893519 60894294 -157142864 - Tigger3b DNA MER2_type -1797 1231 531 333 0 0 0 chr3 60894294 60894331 -157142827 + (CA)n Simple_repeat Simple_repeat 2 38 0 6129 111 63 106 chr3 60894331 60894841 -157142317 - Tigger3b DNA MER2_type -2497 531 1 9774 179 29 9 chr3 60894841 60895217 -157141941 + L1 LINE L1 5335 5702 -1404 733 215 0 21 chr3 60895217 60895361 -157141797 + MER2 DNA MER2_type 1 141 -204 5553 205 35 10 chr3 60895487 60895852 -157141306 + L1 LINE L1 2653 3008 -3138 2297 124 42 14 chr3 60895852 60896206 -157140952 - THE1B LTR MaLR 0 364 1 5553 205 35 10 chr3 60896206 60897215 -157139943 + L1 LINE L1 3008 4061 -2085 2180 194 38 2 chr3 60897216 60897614 -157139544 + MSTB LTR MaLR 1 412 -14 2475 138 8 12 chr3 60897614 60898014 -157139144 + HERVH LTR ERV1 7316 7713 0 2189 159 46 25 chr3 60898014 60898447 -157138711 + LTR7 LTR ERV1 1 442 -8 596 184 201 6 chr3 60898456 60898630 -157138528 + L1MCa LINE L1 903 1110 -5316 716 198 0 0 chr3 60899545 60899666 -157137492 - FLAM_A SINE Alu -8 125 5 1799 138 0 4 chr3 60899728 60899997 -157137161 + AluSx SINE Alu 1 268 -44 20463 60 3 2 chr3 60900141 60904252 -157132906 - L1PA5 LINE L1 -9 6145 2028 348 285 94 56 chr3 60904896 60905163 -157131995 + L2 LINE L2 2807 3083 -189 443 301 114 0 chr3 60906931 60907097 -157130061 - MIR SINE MIR -54 208 24 534 216 52 39 chr3 60907336 60907489 -157129669 - MIR SINE MIR -60 202 48 399 195 52 0 chr3 60909329 60909406 -157127752 + L2 LINE L2 3187 3267 -5 183 129 0 0 chr3 60912375 60912406 -157124752 + (CA)n Simple_repeat Simple_repeat 2 32 0 25 0 0 0 chr3 60912604 60912629 -157124529 + AT_rich Low_complexity Low_complexity 1 25 0 188 185 19 0 chr3 60914211 60914265 -157122893 + (CA)n Simple_repeat Simple_repeat 1 55 0 216 0 0 0 chr3 60914582 60914606 -157122552 + (T)n Simple_repeat Simple_repeat 1 24 0 193 298 0 0 chr3 60915969 60916016 -157121142 + MIR SINE MIR 94 140 -122 518 272 128 20 chr3 60916559 60916754 -157120404 - L2 LINE L2 0 3313 3098 1111 167 115 65 chr3 60916969 60917011 -157120147 - MER58B DNA MER1_type -2079 341 303 2444 71 0 0 chr3 60917011 60917320 -157119838 + AluY SINE Alu 1 309 -2 1111 167 115 65 chr3 60917320 60917600 -157119558 - MER58B DNA MER1_type -2117 303 3 2247 86 0 29 chr3 60918184 60918499 -157118659 + AluSc SINE Alu 1 306 -3 31 71 0 12 chr3 60919325 60919379 -157117779 + AT_rich Low_complexity Low_complexity 1 55 -28 1756 121 53 7 chr3 60919379 60919660 -157117498 + AluSx SINE Alu 1 294 -18 31 71 0 12 chr3 60919660 60919689 -157117469 + AT_rich Low_complexity Low_complexity 55 83 0 11485 112 22 19 chr3 60920010 60921740 -157115418 - L1P LINE L1 -4369 1777 41 1631 154 3 60 chr3 60921786 60921920 -157115238 + AluJb SINE Alu 1 141 -171 2217 92 0 3 chr3 60921920 60922213 -157114945 - AluSp SINE Alu -21 292 1 1631 154 3 60 chr3 60922213 60922396 -157114762 + AluJb SINE Alu 141 300 -12 26 64 0 0 chr3 60922414 60922461 -157114697 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr3 60922530 60922551 -157114607 + AT_rich Low_complexity Low_complexity 1 21 0 1151 152 38 52 chr3 60925241 60925451 -157111707 + MER20 DNA MER1_type 1 207 -12 538 216 74 61 chr3 60925453 60925684 -157111474 - MER106A DNA MER1_type -2 234 1 193 208 0 62 chr3 60925922 60925970 -157111188 + L2 LINE L2 3206 3250 -22 2138 110 10 0 chr3 60926355 60926654 -157110504 + AluSq SINE Alu 1 302 -11 2118 110 3 10 chr3 60926667 60926977 -157110181 + AluSq SINE Alu 1 308 -5 744 204 96 0 chr3 60927590 60927747 -157109411 - MER58C DNA MER1_type 0 215 44 338 225 135 36 chr3 60929397 60929508 -157107650 + MER91C DNA MER1_type 17 138 -2 226 325 100 33 chr3 60929992 60930112 -157107046 - MIR SINE MIR -63 145 18 1873 74 0 4 chr3 60931004 60931247 -157105911 - AluSg SINE Alu -14 296 55 1541 110 0 5 chr3 60932147 60932389 -157104769 + AluSx SINE Alu 64 304 0 2253 116 24 0 chr3 60932409 60932745 -157104413 + L1MA4 LINE L1 5711 6054 -246 1668 156 32 0 chr3 60932745 60933027 -157104131 + AluJb SINE Alu 1 291 -21 244 168 0 18 chr3 60933035 60933255 -157103903 + AluJo SINE Alu 1 302 0 338 307 65 20 chr3 60933255 60933408 -157103750 - L3 LINE CR1 -193 1384 1225 1484 92 9 22 chr3 60934791 60935019 -157102139 - AluSg/x SINE Alu -5 307 83 476 284 81 76 chr3 60935194 60935588 -157101570 - MLT1I LTR MaLR -13 396 1 270 156 47 47 chr3 60935592 60935656 -157101502 - MLT1J LTR MaLR -447 64 1 305 332 54 44 chr3 60935670 60935875 -157101283 + L1MC2 LINE L1 2441 2647 -3893 208 295 33 0 chr3 60936159 60936220 -157100938 - MIR SINE MIR -198 64 2 222 160 0 0 chr3 60936306 60936356 -157100802 + CT-rich Low_complexity Low_complexity 2 51 0 370 274 134 7 chr3 60936476 60936753 -157100405 + L1MC2 LINE L1 3982 4293 -2247 392 214 62 0 chr3 60937618 60937730 -157099428 + L1MC2 LINE L1 4658 4776 -1764 253 98 49 0 chr3 60937730 60937771 -157099387 + L1MB1 LINE L1 6017 6059 -109 1003 224 20 49 chr3 60937772 60938120 -157099038 + L1MC2 LINE L1 4759 5096 -1444 590 153 9 0 chr3 60938121 60938232 -157098926 + GA-rich Low_complexity Low_complexity 1 112 0 2728 187 62 50 chr3 60938232 60939446 -157097712 + L1MC2 LINE L1 5086 6312 -426 1144 216 159 19 chr3 60939476 60940029 -157097129 + L1MEc LINE L1 2026 2596 -3619 816 169 70 0 chr3 60940036 60940178 -157096980 + AluJb SINE Alu 2 153 -159 1757 188 0 6 chr3 60940247 60940633 -157096525 + AluJb SINE Alu 1 384 0 1473 183 15 137 chr3 60940638 60940688 -157096470 + L1MEc LINE L1 2574 2628 -3587 2588 128 49 7 chr3 60940688 60941096 -157096062 + MSTA LTR MaLR 4 428 0 1473 183 15 137 chr3 60941096 60941540 -157095618 + L1MEc LINE L1 2628 2996 -3219 1711 183 0 0 chr3 60941540 60941830 -157095328 + AluJo SINE Alu 1 290 -22 1473 183 15 137 chr3 60941830 60941938 -157095220 + L1MEc LINE L1 2996 3116 -3099 970 61 61 74 chr3 60942038 60942139 -157095019 + LTR10C LTR ERV1 446 546 -45 2089 101 7 10 chr3 60942139 60942159 -157094999 - AluY SINE Alu -4 307 288 321 26 0 0 chr3 60942159 60942197 -157094961 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 2089 101 7 10 chr3 60942197 60942484 -157094674 - AluY SINE Alu -23 288 1 970 61 61 74 chr3 60942484 60942530 -157094628 + LTR10C LTR ERV1 546 591 0 2714 192 39 38 chr3 60942530 60943114 -157094044 + L1M4c LINE L1 205 789 -5595 616 124 21 10 chr3 60943114 60943211 -157093947 + MER4A LTR ERV1 1 98 -566 1808 149 3 35 chr3 60943211 60943566 -157093592 + MER4A LTR ERV1 263 664 0 2360 116 93 18 chr3 60943568 60943762 -157093396 + MER4A-int LTR ERV1 1 179 -6419 342 0 0 0 chr3 60943762 60943800 -157093358 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 2360 116 93 18 chr3 60943800 60944092 -157093066 + MER4A-int LTR ERV1 179 588 -6010 296 95 0 152 chr3 60944137 60944242 -157092916 + MER4A-int LTR ERV1 751 839 -5759 1404 234 36 10 chr3 60944278 60944585 -157092573 + MER4A-int LTR ERV1 1845 2159 -4172 4545 103 38 42 chr3 60944662 60945430 -157091728 + MER4B-int LTR ERV1 198 967 -5791 1815 138 0 21 chr3 60945430 60945759 -157091399 - AluSg SINE Alu 0 310 11 4545 103 38 42 chr3 60945759 60945822 -157091336 + MER4B-int LTR ERV1 967 1029 -5729 288 0 0 0 chr3 60945822 60945854 -157091304 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 4545 103 38 42 chr3 60945854 60945969 -157091189 + MER4B-int LTR ERV1 1029 1198 -5560 3842 91 96 16 chr3 60945978 60946321 -157090837 + MER4B-int LTR ERV1 1756 2070 -4528 2029 125 7 0 chr3 60946321 60946617 -157090541 + AluSx SINE Alu 1 298 -14 3842 91 96 16 chr3 60946617 60946958 -157090200 + MER4B-int LTR ERV1 2070 2495 -4103 1099 188 147 0 chr3 60946958 60947182 -157089976 - LTR8 LTR ERV1 -434 257 1 2072 129 3 0 chr3 60947203 60947505 -157089653 + AluSq SINE Alu 1 303 -10 2690 117 96 9 chr3 60947519 60948050 -157089108 + MER4A-int LTR ERV1 2744 3320 -3278 * 3081 97 112 24 chr3 60948020 60948564 -157088594 + MER4A-int LTR ERV1 3877 4468 -2130 * 6432 91 2 0 chr3 60948553 60949390 -157087768 - MER61C-int LTR ERV1 -3184 5215 4377 2180 151 18 41 chr3 60949570 60950346 -157086812 - MER61C-int LTR ERV1 -4377 2644 182 761 233 0 13 chr3 60950448 60950598 -157086560 - MER61C-int LTR ERV1 -5068 149 2 609 162 13 35 chr3 60950598 60950733 -157086425 - MER61C LTR ERV1 0 434 330 280 331 21 21 chr3 61150937 61151082 -156886076 + L2 LINE L2 2919 3063 -209 235 208 0 0 chr3 61151120 61151168 -156885990 + L2 LINE L2 3223 3270 -2 1877 112 12 59 chr3 61151442 61151617 -156885541 - AluSx SINE Alu -6 306 151 2267 76 0 13 chr3 61151617 61151919 -156885239 - AluY SINE Alu -2 309 12 1877 112 12 59 chr3 61151919 61152064 -156885094 - AluSx SINE Alu -161 151 1 6707 113 34 57 chr3 61152067 61153114 -156884044 + MER4-int LTR ERV1 5353 6423 -175 194 54 0 54 chr3 61153114 61153151 -156884007 + (TTG)n Simple_repeat Simple_repeat 2 36 0 6707 113 34 57 chr3 61153151 61153321 -156883837 + MER4-int LTR ERV1 6423 6541 -57 2101 112 13 13 chr3 61153321 61153633 -156883525 - AluSx SINE Alu 0 312 1 6707 113 34 57 chr3 61153633 61153689 -156883469 + MER4-int LTR ERV1 6541 6597 -1 1831 147 62 16 chr3 61153712 61154032 -156883126 + MER4A LTR ERV1 286 620 -44 1808 106 4 8 chr3 61154032 61154287 -156882871 - AluSq SINE Alu -14 299 46 948 246 57 57 chr3 61154294 61154644 -156882514 + LTR9 LTR ERV1 263 612 0 2298 103 3 3 chr3 61154644 61154965 -156882193 + MER4B-int LTR ERV1 5988 6308 -450 1518 122 0 0 chr3 61154965 61155186 -156881972 - AluSg/x SINE Alu -11 301 81 251 327 192 0 chr3 61155474 61155630 -156881528 + L2 LINE L2 3025 3210 -62 408 253 0 0 chr3 61155844 61155935 -156881223 + L1ME LINE L1 5570 5660 -461 1554 197 3 16 chr3 61156670 61156816 -156880342 + AluJo SINE Alu 1 147 -165 2200 101 7 0 chr3 61156816 61157114 -156880044 + AluSc SINE Alu 1 300 -9 1554 197 3 16 chr3 61157114 61157272 -156879886 + AluJo SINE Alu 147 301 -11 310 288 158 14 chr3 61157468 61157614 -156879544 - MIR SINE MIR -18 244 78 409 261 18 9 chr3 61158310 61158421 -156878737 + MIR3 SINE MIR 48 159 -49 243 208 0 0 chr3 61158648 61158696 -156878462 - MIR SINE MIR -112 150 103 1585 154 34 24 chr3 61159192 61159485 -156877673 - AluJo SINE Alu -12 300 5 418 262 37 55 chr3 61159784 61159948 -156877210 + MIR SINE MIR 80 240 -22 308 258 129 0 chr3 61161212 61161305 -156875853 + MIR SINE MIR 42 146 -62 183 167 0 0 chr3 61161489 61161519 -156875639 + MIR SINE MIR 113 142 -66 2248 65 0 14 chr3 61162683 61163145 -156874013 + AluY SINE Alu 3 460 0 2196 107 3 3 chr3 61163430 61163739 -156873419 - AluSx SINE Alu -3 309 1 189 0 0 0 chr3 61163813 61163834 -156873324 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 432 0 0 0 chr3 61164152 61164200 -156872958 + (TA)n Simple_repeat Simple_repeat 2 49 0 2019 139 3 0 chr3 61164200 61164503 -156872655 - AluSx SINE Alu -8 304 1 329 329 79 58 chr3 61164505 61164848 -156872310 - L2 LINE L2 -12 3260 2911 247 345 0 18 chr3 61165165 61165275 -156871883 + L2 LINE L2 3163 3270 -2 240 249 65 95 chr3 61165635 61165804 -156871354 + L3 LINE CR1 1313 1476 -101 3306 139 42 58 chr3 61166208 61166251 -156870907 - MER4B-int LTR ERV1 -1282 4664 4622 2298 84 3 0 chr3 61166251 61166547 -156870611 - AluSp SINE Alu -16 297 1 2303 94 0 0 chr3 61166547 61166844 -156870314 - AluSx SINE Alu -13 299 1 3306 139 42 58 chr3 61166844 61167202 -156869956 - MER4B-int LTR ERV1 -1323 4623 4261 2162 122 0 0 chr3 61167202 61167505 -156869653 - AluSq SINE Alu -10 303 1 3306 139 42 58 chr3 61167505 61167786 -156869372 - MER4B-int LTR ERV1 -1685 4261 3989 6469 116 160 34 chr3 61167786 61168792 -156868366 + MER52C LTR ERV1 1 1168 -110 2041 109 4 0 chr3 61168792 61169099 -156868059 + AluSq SINE Alu 6 313 0 6469 116 160 34 chr3 61169099 61169224 -156867934 + MER52C LTR ERV1 1168 1276 -2 3306 139 42 58 chr3 61169224 61169269 -156867889 - MER4B-int LTR ERV1 -1957 3989 3945 2047 126 7 3 chr3 61169271 61169572 -156867586 + AluSx SINE Alu 1 302 -10 7205 133 107 119 chr3 61169579 61169856 -156867302 - MER4B-int LTR ERV1 -4447 2151 1872 2235 108 0 0 chr3 61169856 61170163 -156866995 + AluSc SINE Alu 1 307 -2 7205 133 107 119 chr3 61170163 61170254 -156866904 - MER4B-int LTR ERV1 -4726 1872 1781 1781 124 75 7 chr3 61170254 61170536 -156866622 + AluSx SINE Alu 1 301 -11 7205 133 107 119 chr3 61170536 61171180 -156865978 - MER4B-int LTR ERV1 -4817 1781 1130 2236 112 0 0 chr3 61171180 61171484 -156865674 + AluSx SINE Alu 1 304 -8 2449 62 0 0 chr3 61171484 61171789 -156865369 + AluY SINE Alu 1 305 -6 2083 107 9 38 chr3 61171789 61171919 -156865239 + AluSx SINE Alu 3 135 -177 2258 105 0 6 chr3 61171919 61172233 -156864925 + AluSp SINE Alu 1 312 -1 2083 107 9 38 chr3 61172233 61172421 -156864737 + AluSx SINE Alu 135 312 0 7205 133 107 119 chr3 61172421 61172441 -156864717 - MER4B-int LTR ERV1 -5466 1132 1113 2113 128 0 3 chr3 61172441 61172754 -156864404 + AluSx SINE Alu 1 312 0 7205 133 107 119 chr3 61172754 61173206 -156863952 - MER4B-int LTR ERV1 -5485 1113 657 2121 91 30 3 chr3 61173206 61173502 -156863656 - AluSx SINE Alu -6 306 3 7205 133 107 119 chr3 61173502 61173701 -156863457 - MER4B-int LTR ERV1 -5941 657 457 2349 64 3 3 chr3 61173701 61174012 -156863146 - AluY SINE Alu 0 311 1 7205 133 107 119 chr3 61174012 61174500 -156862658 - MER4B-int LTR ERV1 -6141 457 1 3629 107 60 7 chr3 61174503 61175074 -156862084 - MER4B LTR ERV1 0 610 10 2077 88 0 27 chr3 61175087 61175383 -156861775 - AluSx SINE Alu -24 288 1 410 301 18 0 chr3 61175458 61175571 -156861587 - MIR SINE MIR -58 150 36 303 79 0 0 chr3 61175815 61175853 -156861305 - AluSp/q SINE Alu -34 269 232 278 232 162 0 chr3 61176457 61176556 -156860602 - L2 LINE L2 -19 3294 3180 3062 139 33 69 chr3 61177459 61178029 -156859129 - L1MB7 LINE L1 -13 6171 5582 221 0 65 43 chr3 61178029 61178075 -156859083 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2081 101 0 0 chr3 61178083 61178360 -156858798 - AluSx SINE Alu -35 277 1 1683 172 3 7 chr3 61178366 61178656 -156858502 - AluJo SINE Alu -23 289 1 3062 139 33 69 chr3 61178656 61178704 -156858454 - L1MB7 LINE L1 -614 5570 5560 227 31 31 0 chr3 61178704 61178736 -156858422 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1047 224 7 26 chr3 61178739 61179011 -156858147 - L1M4 LINE L1 -1455 4691 4425 1343 90 0 0 chr3 61179011 61179189 -156857969 - AluY SINE Alu -4 307 130 351 223 143 7 chr3 61179190 61179342 -156857816 - L1M4 LINE L1 -1731 4415 4243 231 132 0 0 chr3 61179401 61179439 -156857719 - L1M4 LINE L1 -1893 4253 4216 270 253 105 0 chr3 61179802 61179897 -156857261 - MIR SINE MIR -62 146 42 463 230 20 80 chr3 61181483 61181645 -156855513 + MIR SINE MIR 50 202 -60 469 259 49 16 chr3 61181746 61181923 -156855235 - MIR SINE MIR -38 224 39 1641 155 47 7 chr3 61182904 61183025 -156854133 + AluJo SINE Alu 1 116 -196 207 0 0 0 chr3 61183025 61183048 -156854110 + (TAAAA)n Simple_repeat Simple_repeat 4 26 0 1641 155 47 7 chr3 61183048 61183223 -156853935 + AluJo SINE Alu 116 309 -3 305 271 157 7 chr3 61185928 61186068 -156851090 + MIR SINE MIR 74 234 -28 219 305 68 8 chr3 61186515 61186633 -156850525 + MIR SINE MIR 125 249 -13 926 115 0 43 chr3 61188802 61188941 -156848217 - FLAM_C SINE Alu 0 133 1 270 305 63 65 chr3 61191415 61191520 -156845638 - MIR SINE MIR -60 202 97 2019 123 7 0 chr3 61191520 61191804 -156845354 + AluSx SINE Alu 5 290 -22 270 305 63 65 chr3 61191804 61191887 -156845271 - MIR SINE MIR -165 97 15 833 194 6 24 chr3 61195092 61195257 -156841901 + AluJb SINE Alu 132 293 -19 2155 111 7 0 chr3 61195992 61196298 -156840860 - AluSx SINE Alu -4 308 1 334 221 58 0 chr3 61196322 61196408 -156840750 - L1MB4 LINE L1 -1 6179 6089 366 176 77 0 chr3 61196422 61196513 -156840645 - L1MA4 LINE L1 -281 6019 5922 1264 170 33 118 chr3 61197236 61197578 -156839580 - MLT1A1 LTR MaLR 0 365 60 2264 101 0 3 chr3 61197578 61197885 -156839273 - AluSx SINE Alu -6 306 1 1264 170 33 118 chr3 61197885 61197941 -156839217 - MLT1A1 LTR MaLR -305 60 1 224 261 80 23 chr3 61198401 61198489 -156838669 + MIR SINE MIR 48 140 -122 285 283 66 0 chr3 61199223 61199329 -156837829 - MIR3 SINE MIR -3 205 93 2183 118 3 0 chr3 61201344 61201648 -156835510 - AluSx SINE Alu -7 305 1 440 304 42 21 chr3 61201648 61201886 -156835272 + L1M4 LINE L1 2857 3087 -3059 2113 132 0 0 chr3 61202650 61202946 -156834212 + AluSx SINE Alu 1 296 -16 2292 84 0 10 chr3 61202953 61203251 -156833907 + AluY SINE Alu 1 295 -16 1965 191 45 5 chr3 61203686 61204064 -156833094 + MSTD LTR MaLR 4 396 0 270 264 61 98 chr3 61205862 61206025 -156831133 - MIR SINE MIR -1 261 105 464 291 120 0 chr3 61207473 61207631 -156829527 - MIR SINE MIR -15 247 71 310 314 192 23 chr3 61207672 61207933 -156829225 - L2 LINE L2 -83 3230 2926 204 301 32 32 chr3 61208995 61209088 -156828070 - MIR SINE MIR -79 129 37 211 391 62 0 chr3 61209439 61209567 -156827591 - MIR SINE MIR -14 248 113 795 138 28 21 chr3 61210367 61210512 -156826646 - L1MB4 LINE L1 -2 6178 6033 1370 121 0 84 chr3 61210774 61210950 -156826208 - MER20 DNA MER1_type 0 219 67 1891 176 0 3 chr3 61210950 61211252 -156825906 + AluJo SINE Alu 1 301 -11 1370 121 0 84 chr3 61211252 61211314 -156825844 - MER20 DNA MER1_type -152 67 1 319 344 156 5 chr3 61213073 61213285 -156823873 + MIR SINE MIR 14 257 -5 1777 169 0 17 chr3 61213285 61213442 -156823716 - AluJo SINE Alu -22 290 139 2113 128 0 0 chr3 61213442 61213740 -156823418 - AluSx SINE Alu -14 298 1 1777 169 0 17 chr3 61213740 61213877 -156823281 - AluJo SINE Alu -173 139 1 826 154 7 27 chr3 61214610 61214759 -156822399 - L1PB4 LINE L1 0 6156 6011 2006 132 17 6 chr3 61214767 61215122 -156822036 - MLT1A1 LTR MaLR 0 365 7 2100 100 17 0 chr3 61215603 61215902 -156821256 - AluSp SINE Alu -9 304 1 1864 174 0 3 chr3 61215905 61216210 -156820948 - AluSx SINE Alu -4 308 5 433 182 159 0 chr3 61216350 61216438 -156820720 + FLAM_A SINE Alu 14 115 -27 2112 118 10 0 chr3 61216443 61216739 -156820419 - AluSg SINE Alu -11 299 1 1762 155 45 0 chr3 61216809 61217100 -156820058 + AluJb SINE Alu 1 304 -8 1916 142 3 23 chr3 61217106 61217408 -156819750 + AluSx SINE Alu 7 302 -10 225 243 0 39 chr3 61222414 61222517 -156814641 + G-rich Low_complexity Low_complexity 6 104 0 287 311 4 0 chr3 61222595 61222709 -156814449 - MIR SINE MIR -62 146 73 2063 95 28 0 chr3 61223347 61223631 -156813527 + AluSx SINE Alu 1 292 -20 420 246 27 0 chr3 61224584 61224694 -156812464 - HAL1 LINE L1 -741 1766 1654 1238 141 0 0 chr3 61224767 61224958 -156812200 - AluSp SINE Alu -2 311 121 371 312 35 52 chr3 61224959 61225132 -156812026 - L1M4 LINE L1 -852 5294 5125 368 147 30 19 chr3 61225133 61225225 -156811933 + LTR24B LTR ERV1 3 95 -370 2364 75 0 0 chr3 61225225 61225520 -156811638 - AluSx SINE Alu 0 312 18 240 146 0 6 chr3 61225568 61225624 -156811534 - AluSx SINE Alu -263 37 1 2411 181 47 74 chr3 61225683 61226317 -156810841 + LTR34 LTR ERV1 79 695 -4 1369 208 32 32 chr3 61226434 61226614 -156810544 - AluJo SINE Alu -4 308 126 225 65 0 0 chr3 61226614 61226645 -156810513 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 1369 208 32 32 chr3 61226645 61226772 -156810386 - AluJo SINE Alu -185 127 1 902 147 0 22 chr3 61226787 61226923 -156810235 - FLAM_C SINE Alu 0 133 1 480 254 62 0 chr3 61226951 61227081 -156810077 + MIR SINE MIR 56 193 -69 323 279 253 13 chr3 61227135 61227289 -156809869 - L2 LINE L2 0 3313 3123 387 276 24 0 chr3 61227856 61227983 -156809175 - MLT1K LTR MaLR -275 313 184 262 208 13 26 chr3 61228078 61228155 -156809003 + L2 LINE L2 2896 2971 -301 2200 82 27 0 chr3 61228171 61228465 -156808693 + AluSp SINE Alu 12 313 0 279 265 247 19 chr3 61231162 61231324 -156805834 - MIR SINE MIR -1 261 63 2342 95 0 0 chr3 61231892 61232197 -156804961 - AluSq SINE Alu -8 305 1 216 0 0 0 chr3 61232651 61232675 -156804483 + (TG)n Simple_repeat Simple_repeat 1 24 0 2257 65 48 0 chr3 61234279 61234569 -156802589 - AluY SINE Alu -7 304 1 432 244 16 8 chr3 61234713 61234836 -156802322 - Charlie8 DNA MER1_type -2237 180 57 2248 62 24 3 chr3 61235188 61235480 -156801678 - AluSp SINE Alu -14 299 2 215 324 93 19 chr3 61238669 61238777 -156798381 - MIR SINE MIR -75 133 18 1422 226 61 53 chr3 61239859 61240354 -156796804 - MLT1D LTR MaLR -10 488 1 963 282 123 29 chr3 61241121 61241854 -156795304 - L2 LINE L2 -8 3305 2500 2269 94 7 0 chr3 61242845 61243153 -156794005 - AluSp SINE Alu -3 310 1 226 296 11 23 chr3 61243301 61243389 -156793769 + L1M4b LINE L1 432 518 -6341 184 274 107 48 chr3 61247444 61247528 -156789630 + L2 LINE L2 3136 3224 -48 578 71 12 0 chr3 61247797 61247881 -156789277 + (TCCC)n Simple_repeat Simple_repeat 2 86 0 1791 180 26 3 chr3 61247893 61248198 -156788960 - AluJb SINE Alu 0 312 1 1756 133 51 17 chr3 61248198 61248491 -156788667 - AluJb SINE Alu -9 303 1 348 321 91 7 chr3 61249609 61249776 -156787382 + MIR SINE MIR 5 185 -68 2265 112 0 3 chr3 61250261 61250574 -156786584 - AluSx SINE Alu 0 312 1 576 355 116 20 chr3 61251213 61251610 -156785548 - L2 LINE L2 -1 3312 2878 2145 100 3 17 chr3 61251683 61251983 -156785175 - AluSx SINE Alu -16 296 1 1664 149 4 8 chr3 61251988 61252256 -156784902 - AluJo SINE Alu -25 287 21 393 316 267 15 chr3 61252299 61253525 -156783633 - L2 LINE L2 -531 2783 1154 857 218 18 0 chr3 61253685 61253850 -156783308 - FRAM SINE Alu -12 164 1 2829 151 44 13 chr3 61254230 61254755 -156782403 + L1MB7 LINE L1 5644 6184 0 2296 93 3 3 chr3 61255383 61255695 -156781463 + AluSp SINE Alu 1 312 -1 2309 119 33 6 chr3 61257065 61257402 -156779756 + MER7A DNA MER2_type 2 345 -1 1727 148 13 26 chr3 61257418 61257721 -156779437 - AluJo SINE Alu -13 299 1 192 336 37 47 chr3 61257722 61257829 -156779329 - MIR SINE MIR -63 145 40 1737 138 53 3 chr3 61258234 61258517 -156778641 + AluJb SINE Alu 1 297 -15 2364 88 0 0 chr3 61258707 61259014 -156778144 + AluY SINE Alu 1 307 -4 495 241 40 14 chr3 61259339 61259504 -156777654 - MIR SINE MIR -56 206 34 235 348 71 21 chr3 61259540 61259681 -156777477 - MIR SINE MIR -6 256 109 2321 98 33 16 chr3 61260373 61260739 -156776419 + L1PA15 LINE L1 5794 6165 0 2220 86 6 13 chr3 61260778 61260911 -156776247 + AluY SINE Alu 1 133 -178 2449 66 0 0 chr3 61260911 61261212 -156775946 + AluY SINE Alu 1 301 -10 2220 86 6 13 chr3 61261212 61261391 -156775767 + AluY SINE Alu 133 311 0 1612 175 13 26 chr3 61263814 61264117 -156773041 - AluJo SINE Alu -13 299 1 1997 149 0 0 chr3 61264653 61264955 -156772203 - AluSx SINE Alu -10 302 1 2024 127 0 0 chr3 61265838 61266146 -156771012 - AluSx SINE Alu 0 308 1 1555 182 13 26 chr3 61266438 61266740 -156770418 - AluJo SINE Alu -10 302 5 1600 133 8 0 chr3 61267517 61267758 -156769400 - AluSx SINE Alu -69 243 1 1642 126 60 4 chr3 61267786 61268055 -156769103 + L1MB3 LINE L1 5900 6183 0 2064 125 20 0 chr3 61268098 61268401 -156768757 + AluSx SINE Alu 1 309 -3 184 280 149 9 chr3 61268573 61268680 -156768478 + MIR SINE MIR 129 250 -12 191 261 22 0 chr3 61270724 61270770 -156766388 + MIR SINE MIR 216 262 0 207 261 54 65 chr3 61271385 61271477 -156765681 + MIR SINE MIR 86 176 -86 2042 104 40 0 chr3 61271481 61271779 -156765379 - AluSx SINE Alu -2 310 1 321 269 67 17 chr3 61271819 61271938 -156765220 + MIR SINE MIR 16 140 -68 189 229 292 0 chr3 61272427 61272523 -156764635 + MER5A DNA MER1_type 42 165 -24 245 348 142 0 chr3 61272573 61272699 -156764459 + MIR SINE MIR 22 166 -63 280 267 23 17 chr3 61272772 61272948 -156764210 + CT-rich Low_complexity Low_complexity 2 178 0 225 0 0 0 chr3 61273202 61273227 -156763931 + (TTTTTA)n Simple_repeat Simple_repeat 2 26 0 2096 100 4 0 chr3 61274148 61274538 -156762620 - AluSx SINE Alu 0 391 1 2495 68 0 0 chr3 61275847 61276157 -156761001 - AluY SINE Alu 0 311 2 329 322 0 8 chr3 61276162 61276280 -156760878 + Charlie8 DNA MER1_type 70 186 -2231 379 280 28 0 chr3 61276414 61276521 -156760637 - MIR SINE MIR -65 143 34 256 260 73 21 chr3 61277474 61277570 -156759588 - MIR SINE MIR -78 130 30 374 328 0 23 chr3 61278238 61278366 -156758792 + MIR SINE MIR 27 151 -111 364 131 16 0 chr3 61278382 61278442 -156758716 + MLT2C1 LTR ERVL 11 71 -393 323 73 0 0 chr3 61278442 61278483 -156758675 + Alu SINE Alu 1 41 -261 1492 106 22 13 chr3 61278483 61278741 -156758417 + AluSg/x SINE Alu 74 312 0 1615 192 34 3 chr3 61278742 61279065 -156758093 + MLT2C1 LTR ERVL 64 396 -1 188 301 68 0 chr3 61279148 61279221 -156757937 - MIR SINE MIR -108 154 77 240 293 65 83 chr3 61279639 61279824 -156757334 - Charlie8 DNA MER1_type -2103 314 132 1638 154 50 0 chr3 61279824 61280104 -156757054 - AluJb SINE Alu -18 294 1 240 293 65 83 chr3 61280104 61280147 -156757011 - Charlie8 DNA MER1_type -2285 132 90 332 263 204 5 chr3 61280377 61280549 -156756609 - L1MC4a LINE L1 -346 5824 5691 1533 116 0 13 chr3 61280595 61280819 -156756339 + AluSg/x SINE Alu 86 306 -6 2219 69 7 30 chr3 61280840 61281144 -156756014 - AluY SINE Alu -14 297 1 564 327 16 65 chr3 61281274 61281595 -156755563 - L2 LINE L2 -1 3271 2967 236 222 0 0 chr3 61282305 61282350 -156754808 + L2 LINE L2 3269 3313 0 210 171 0 24 chr3 61282356 61282397 -156754761 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 198 273 36 0 chr3 61283639 61283694 -156753464 + MIR SINE MIR 81 137 -71 2252 93 3 7 chr3 61284656 61284966 -156752192 + AluSx SINE Alu 1 309 -3 404 180 219 16 chr3 61285132 61285260 -156751898 - MER5A DNA MER1_type -35 154 1 507 199 69 8 chr3 61285261 61285392 -156751766 + L2 LINE L2 2667 2805 -509 182 273 18 0 chr3 61286659 61286714 -156750444 - MIR SINE MIR -6 256 201 390 184 0 11 chr3 61286744 61286831 -156750327 + MLT1C LTR MaLR 34 119 -348 5513 70 24 22 chr3 61286831 61287088 -156750070 - L1P LINE L1 -1635 4511 4256 2258 72 3 3 chr3 61287088 61287381 -156749777 - AluY SINE Alu -14 297 5 5513 70 24 22 chr3 61287381 61287946 -156749212 - L1P LINE L1 -1890 4256 3687 1585 64 59 0 chr3 61287946 61288165 -156748993 + L1P3 LINE L1 5446 5677 -477 1992 141 0 19 chr3 61288165 61288302 -156748856 + AluSx SINE Alu 1 139 -173 2184 105 3 7 chr3 61288302 61288608 -156748550 + AluSp SINE Alu 1 305 -8 1992 141 0 19 chr3 61288608 61288783 -156748375 + AluSx SINE Alu 139 307 -5 895 225 67 10 chr3 61288785 61288994 -156748164 + MLT1C LTR MaLR 213 433 -34 398 277 54 8 chr3 61289023 61289153 -156748005 - MIR3 SINE MIR -62 146 11 2057 119 0 7 chr3 61289920 61290222 -156746936 - AluSx SINE Alu -12 300 1 835 124 31 0 chr3 61290521 61290650 -156746508 - FRAM SINE Alu -3 173 41 799 265 84 20 chr3 61291003 61291364 -156745794 + LTR16C LTR ERVL 61 491 0 414 328 0 6 chr3 61291415 61291595 -156745563 + (CA)n Simple_repeat Simple_repeat 1 179 0 621 298 113 16 chr3 61292921 61293300 -156743858 - L2 LINE L2 -4 3268 2853 286 269 77 0 chr3 61293492 61293596 -156743562 + MER5A DNA MER1_type 51 162 -27 1229 137 0 6 chr3 61293806 61293981 -156743177 + FAM SINE Alu 1 174 -1 1797 137 36 16 chr3 61294044 61294160 -156742998 + AluSx SINE Alu 1 113 -199 219 36 0 0 chr3 61294160 61294188 -156742970 + (CAA)n Simple_repeat Simple_repeat 3 30 0 1797 137 36 16 chr3 61294188 61294377 -156742781 + AluSx SINE Alu 113 312 0 232 245 314 0 chr3 61294528 61294630 -156742528 + MIR SINE MIR 9 142 -120 219 256 58 58 chr3 61294990 61295055 -156742103 - MIR SINE MIR -79 129 62 1103 172 39 10 chr3 61295055 61295258 -156741900 - MER3 DNA MER1_type 0 209 1 422 261 7 12 chr3 61295267 61295395 -156741763 - MER5B DNA MER1_type 0 178 61 938 271 199 16 chr3 61296524 61296952 -156740206 - L2 LINE L2 0 3313 2808 321 330 9 38 chr3 61297047 61297212 -156739946 - MIR SINE MIR -64 144 13 2103 124 3 16 chr3 61297475 61297832 -156739326 + AluSq SINE Alu 1 313 0 1992 149 0 0 chr3 61298250 61298551 -156738607 - AluSx SINE Alu -11 301 1 1817 115 98 3 chr3 61298551 61298856 -156738302 - MER4B LTR ERV1 -245 365 32 2034 95 58 10 chr3 61298891 61299185 -156737973 - AluSc SINE Alu -1 308 1 1733 97 0 4 chr3 61299207 61299444 -156737714 - MER4B-int LTR ERV1 0 6758 6523 1979 107 68 0 chr3 61302099 61302379 -156734779 + AluSx SINE Alu 1 299 -13 372 317 0 16 chr3 61302682 61302805 -156734353 - MIR3 SINE MIR -54 154 34 214 333 14 0 chr3 61304203 61304275 -156732883 + MIR SINE MIR 178 250 -12 186 208 75 19 chr3 61304339 61304392 -156732766 - MIR SINE MIR -95 113 58 2071 109 17 3 chr3 61304403 61304697 -156732461 - AluSg SINE Alu -12 298 1 212 316 0 0 chr3 61306690 61306747 -156730411 - MIR SINE MIR -21 241 185 2186 95 0 26 chr3 61306747 61307052 -156730106 - AluSc SINE Alu -12 297 1 355 244 81 41 chr3 61307779 61307829 -156729329 + L1MC4 LINE L1 7864 7911 -131 405 0 0 0 chr3 61307829 61307874 -156729284 + (CA)n Simple_repeat Simple_repeat 2 46 0 355 244 81 41 chr3 61307874 61307995 -156729163 + L1MC4 LINE L1 7911 8042 0 270 222 10 50 chr3 61308681 61308780 -156728378 + CT-rich Low_complexity Low_complexity 4 98 0 328 329 0 13 chr3 61309367 61309522 -156727636 + C-rich Low_complexity Low_complexity 5 157 0 233 209 17 26 chr3 61309582 61309697 -156727461 + CT-rich Low_complexity Low_complexity 1 114 0 209 239 319 35 chr3 61312015 61312128 -156725030 - MIR3 SINE MIR -62 146 2 328 301 0 0 chr3 61312703 61312786 -156724372 + (CA)n Simple_repeat Simple_repeat 2 84 0 276 130 0 0 chr3 61318904 61318950 -156718208 + (A)n Simple_repeat Simple_repeat 1 46 0 247 169 28 0 chr3 61323576 61323647 -156713511 + (CGGGA)n Simple_repeat Simple_repeat 2 74 0 244 196 265 10 chr3 61325948 61326050 -156711108 + MIR SINE MIR 19 146 -62 190 320 200 16 chr3 61326339 61326464 -156710694 - MIR3 SINE MIR -20 188 41 1963 119 6 45 chr3 61326838 61326973 -156710185 + AluSx SINE Alu 1 140 -172 2336 71 0 0 chr3 61326973 61327279 -156709879 + AluY SINE Alu 1 306 0 1963 119 6 45 chr3 61327279 61327453 -156709705 + AluSx SINE Alu 140 299 -13 204 217 72 116 chr3 61327703 61327841 -156709317 - MIR SINE MIR -61 147 16 275 276 20 61 chr3 61328570 61328668 -156708490 - MIR SINE MIR -113 149 56 427 176 15 0 chr3 61329917 61329985 -156707173 + AluJ/FLAM SINE Alu 1 69 -243 1516 160 11 25 chr3 61329986 61330261 -156706897 + AluJo SINE Alu 31 301 -11 412 216 39 20 chr3 61330280 61330382 -156706776 - MIR SINE MIR -56 206 103 368 322 81 43 chr3 61330390 61330648 -156706510 + L3 LINE CR1 1277 1544 -33 244 254 42 0 chr3 61330847 61330918 -156706240 - MER96 DNA MER1_type? -98 77 4 185 341 61 8 chr3 61330977 61331109 -156706049 + L2 LINE L2 2470 2608 -706 279 364 23 8 chr3 61331369 61331498 -156705660 + L2 LINE L2 3180 3310 -3 354 45 0 0 chr3 61331960 61332004 -156705154 + (CA)n Simple_repeat Simple_repeat 1 44 0 278 293 12 12 chr3 61332718 61332800 -156704358 - MIR SINE MIR -87 121 40 1232 314 169 18 chr3 61333198 61334153 -156703005 + L2 LINE L2 2208 3310 -3 206 299 0 52 chr3 61334526 61334623 -156702535 + L2 LINE L2 3179 3270 -2 209 295 86 19 chr3 61335940 61336045 -156701113 - MIR3 SINE MIR -34 174 63 1977 141 7 3 chr3 61337726 61338030 -156699128 - AluJo SINE Alu -7 305 1 2370 66 0 7 chr3 61338042 61338343 -156698815 - AluY SINE Alu -12 299 1 801 234 0 0 chr3 61341912 61342087 -156695071 + C-rich Low_complexity Low_complexity 1 175 0 210 226 11 32 chr3 61342114 61342207 -156694951 + C-rich Low_complexity Low_complexity 2 92 0 226 296 11 23 chr3 61343081 61343169 -156693989 - L1M4b LINE L1 -6341 518 432 2371 64 10 0 chr3 61343317 61343613 -156693545 + AluSx SINE Alu 1 299 -13 389 307 55 37 chr3 61343615 61343778 -156693380 - MIR SINE MIR -92 170 5 395 228 98 57 chr3 61343902 61344025 -156693133 + HAL1b LINE L1 1233 6121 0 1594 228 61 13 chr3 61344176 61344702 -156692456 + L1M4 LINE L1 3666 4216 -1930 202 205 0 90 chr3 61346263 61346341 -156690817 + G-rich Low_complexity Low_complexity 2 72 0 2006 112 7 0 chr3 61346777 61347062 -156690096 + AluSx SINE Alu 1 287 -25 727 179 8 0 chr3 61348006 61348129 -156689029 - FLAM_C SINE Alu -19 124 1 1923 123 10 7 chr3 61348494 61348795 -156688363 + AluSx SINE Alu 3 304 -8 3375 185 13 29 chr3 61349112 61349171 -156687987 - L1 LINE L1 -1092 5054 4996 1741 180 0 10 chr3 61349171 61349476 -156687682 + AluJb SINE Alu 1 302 -10 3375 185 13 29 chr3 61349476 61350237 -156686921 - L1 LINE L1 -1150 4996 4247 368 240 0 34 chr3 61350267 61350508 -156686650 + C-rich Low_complexity Low_complexity 1 232 0 663 120 247 20 chr3 61352123 61352273 -156684885 + AluY SINE Alu 103 286 -25 242 267 53 0 chr3 61352277 61352352 -156684806 - L1ME1 LINE L1 -40 6126 6048 1822 113 31 4 chr3 61353539 61353795 -156683363 + AluSg SINE Alu 34 296 -14 235 170 0 0 chr3 61354017 61354064 -156683094 - L1MB4 LINE L1 0 6180 6134 267 31 0 0 chr3 61354087 61354119 -156683039 + (TA)n Simple_repeat Simple_repeat 2 33 0 1881 124 79 7 chr3 61354119 61354401 -156682757 - AluSx SINE Alu -6 306 1 283 222 56 0 chr3 61354456 61354546 -156682612 - L1ME1 LINE L1 -254 5867 5773 1287 131 36 2 chr3 61355016 61355425 -156681733 - MER84 LTR ERVI 0 507 2 2036 152 7 3 chr3 61355442 61355752 -156681406 + AluJb SINE Alu 1 311 -1 1798 170 3 25 chr3 61356032 61356350 -156680808 + AluJb SINE Alu 1 311 -1 322 183 86 11 chr3 61356472 61356565 -156680593 + LTR24B LTR ERV1 4 103 -473 233 209 17 26 chr3 61356949 61357064 -156680094 + CT-rich Low_complexity Low_complexity 1 114 0 185 239 319 35 chr3 61359381 61359494 -156677664 - MIR3 SINE MIR -62 146 2 328 301 0 0 chr3 61360069 61360152 -156677006 + (CA)n Simple_repeat Simple_repeat 2 84 0 234 212 30 15 chr3 61362013 61362079 -156675079 + L3 LINE CR1 1156 1222 -355 247 296 74 59 chr3 61366802 61366937 -156670221 + MIR3 SINE MIR 21 157 -51 662 128 84 84 chr3 61367352 61367494 -156669664 - MER53 DNA DNA -1 188 44 2331 77 11 0 chr3 61367494 61367781 -156669377 + AluSx SINE Alu 1 290 -22 662 128 84 84 chr3 61367781 61367817 -156669341 - MER53 DNA DNA -144 45 10 2030 118 3 3 chr3 61368388 61368676 -156668482 - AluSx SINE Alu -24 288 1 967 149 48 0 chr3 61369165 61369333 -156667825 + AluJo SINE Alu 1 176 -136 2289 101 3 3 chr3 61369552 61369849 -156667309 - AluSx SINE Alu -15 297 1 2381 113 0 0 chr3 61370428 61370737 -156666421 - AluSx SINE Alu -3 309 1 1954 140 14 0 chr3 61370893 61371179 -156665979 - AluSx SINE Alu -14 298 9 1231 151 92 118 chr3 61371538 61371895 -156665263 - MER7A DNA MER2_type 0 346 1 2127 129 6 22 chr3 61372571 61372888 -156664270 + AluSx SINE Alu 1 312 0 1888 115 4 7 chr3 61373229 61373498 -156663660 - AluY SINE Alu 0 311 44 2287 114 0 0 chr3 61373499 61373796 -156663362 - AluSq SINE Alu -16 297 1 1878 132 44 0 chr3 61373885 61374158 -156663000 + AluJb SINE Alu 12 296 -16 1672 114 155 0 chr3 61376249 61376520 -156660638 + AluSq SINE Alu 1 313 0 875 134 0 0 chr3 61376539 61376666 -156660492 + AluJb SINE Alu 169 295 -17 258 160 0 20 chr3 61376856 61376906 -156660252 - Alu SINE Alu -5 296 248 1878 155 3 16 chr3 61377586 61377895 -156659263 + AluSx SINE Alu 1 305 -7 1980 125 54 0 chr3 61378131 61378426 -156658732 - AluY SINE Alu 0 311 1 1047 98 8 0 chr3 61378426 61378559 -156658599 - AluSq/x SINE Alu -178 135 2 2152 123 3 0 chr3 61379302 61379595 -156657563 - AluSx SINE Alu -18 294 1 842 212 17 6 chr3 61379797 61379976 -156657182 + MER5A DNA MER1_type 3 183 -6 3506 161 68 8 chr3 61380030 61380739 -156656419 - L1MB7 LINE L1 -16 6168 5418 2285 102 23 0 chr3 61381289 61381594 -156655564 - AluSp SINE Alu -1 312 1 2386 89 7 0 chr3 61382096 61382399 -156654759 - AluSq SINE Alu -8 305 1 223 282 35 12 chr3 61383509 61383594 -156653564 - MIR SINE MIR -99 163 77 232 310 28 0 chr3 61386698 61386769 -156650389 - MIR SINE MIR -124 138 66 2606 60 3 0 chr3 61387207 61387508 -156649650 + AluSp SINE Alu 1 302 -11 286 224 208 27 chr3 61387843 61388026 -156649132 - L1ME4a LINE L1 -101 6020 5805 2185 106 34 3 chr3 61389276 61389568 -156647590 + AluSq SINE Alu 1 301 -12 2209 100 17 0 chr3 61389834 61390133 -156647025 - AluSp SINE Alu -9 304 1 1459 168 4 4 chr3 61390136 61390368 -156646790 - AluSg/x SINE Alu -4 306 75 3578 204 27 18 chr3 61390369 61391120 -156646038 - L1ME2 LINE L1 -34 6130 5370 2411 83 0 16 chr3 61391120 61391433 -156645725 - AluSc SINE Alu -1 308 1 3578 204 27 18 chr3 61391433 61391470 -156645688 - L1ME2 LINE L1 -794 5370 5335 623 121 0 10 chr3 61391571 61391670 -156645488 + AluJo SINE Alu 33 130 -182 2344 113 3 0 chr3 61393089 61393399 -156643759 - AluSx SINE Alu -1 311 1 979 152 105 0 chr3 61393762 61393933 -156643225 - MER5A DNA MER1_type 0 189 1 189 74 0 0 chr3 61394139 61394166 -156642992 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2228 100 3 10 chr3 61394172 61394462 -156642696 - AluSx SINE Alu -24 288 1 1121 159 12 0 chr3 61394503 61394673 -156642485 + AluJo SINE Alu 136 307 -5 2292 119 3 0 chr3 61395143 61395455 -156641703 - AluSq SINE Alu 0 313 1 207 0 0 0 chr3 61397340 61397363 -156639795 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 251 232 199 59 chr3 61397378 61397650 -156639508 - L1MC5 LINE L1 -51 7910 7601 1693 223 124 17 chr3 61398579 61399109 -156638049 + L1MD3 LINE L1 7408 7994 -1 850 166 89 13 chr3 61400286 61400443 -156636715 - FRAM SINE Alu -7 169 1 2419 51 48 3 chr3 61400613 61400907 -156636251 - AluY SINE Alu -4 307 1 3460 182 45 17 chr3 61402339 61403087 -156634071 - L1ME1 LINE L1 -15 6151 5383 2365 185 88 56 chr3 61403100 61403264 -156633894 - L1ME2 LINE L1 -966 5180 5023 2063 151 6 0 chr3 61403264 61403575 -156633583 - AluSq SINE Alu 0 313 1 2365 185 88 56 chr3 61403575 61404143 -156633015 - L1ME2 LINE L1 -1123 5023 4419 1155 238 105 41 chr3 61404143 61404580 -156632578 + MLT1C LTR MaLR 1 465 -2 2365 185 88 56 chr3 61404580 61404618 -156632540 - L1ME2 LINE L1 -1727 4419 4384 775 232 91 51 chr3 61404611 61405020 -156632138 + L1MDa LINE L1 1304 1877 -4549 * 1102 234 87 9 chr3 61405028 61405507 -156631651 - L1MCc LINE L1 -4887 1536 1264 748 273 13 58 chr3 61405530 61405838 -156631320 - L1MCc LINE L1 -5314 1109 816 1079 284 49 33 chr3 61405993 61406444 -156630714 - L1MCc LINE L1 -5942 481 24 2112 123 0 0 chr3 61406958 61407250 -156629908 - AluSx SINE Alu -20 292 1 526 317 54 27 chr3 61407827 61408048 -156629110 + MIR SINE MIR 36 262 0 296 263 20 40 chr3 61408673 61408772 -156628386 - MIR SINE MIR -81 181 85 458 367 38 12 chr3 61410601 61410841 -156626317 + MIR SINE MIR 13 258 -4 495 273 49 12 chr3 61413102 61413264 -156623894 + MIR SINE MIR 16 182 -69 368 289 83 0 chr3 61414853 61414974 -156622184 + MIR3 SINE MIR 56 186 -22 351 295 19 19 chr3 61419887 61419992 -156617166 - L2 LINE L2 0 3272 3168 182 304 111 44 chr3 61420869 61421004 -156616154 + L2 LINE L2 3125 3268 -4 323 294 84 17 chr3 61421028 61421147 -156616011 - MIR SINE MIR -122 140 14 273 332 125 3 chr3 61422852 61422997 -156614161 + L2 LINE L2 2842 2999 -314 618 198 302 0 chr3 61425482 61425654 -156611504 - MER58A DNA MER1_type 0 224 1 729 241 0 0 chr3 61426587 61426732 -156610426 + MIR SINE MIR 33 177 -85 2195 74 40 3 chr3 61428020 61428319 -156608839 + AluY SINE Alu 1 310 -1 25 65 0 0 chr3 61428378 61428424 -156608734 + AT_rich Low_complexity Low_complexity 1 46 0 241 341 0 0 chr3 61432178 61432263 -156604895 + MIR SINE MIR 67 151 -111 2373 79 0 0 chr3 61433331 61433636 -156603522 + AluSx SINE Alu 1 305 -7 182 209 70 0 chr3 61436880 61436923 -156600235 + MER5B DNA MER1_type 133 178 0 711 269 52 39 chr3 61437160 61437542 -156599616 + L2 LINE L2 2624 3005 -308 468 287 9 0 chr3 61437509 61437624 -156599534 + MIR SINE MIR 102 217 -45 * 189 182 30 15 chr3 61438367 61438433 -156598725 + CT-rich Low_complexity Low_complexity 1 67 0 273 277 85 8 chr3 61439075 61439205 -156597953 + MER103 DNA DNA 20 159 -7 1571 97 8 0 chr3 61439948 61440186 -156596972 - MER1B DNA MER1_type 0 339 100 1817 157 6 25 chr3 61442621 61442939 -156594219 - AluJb SINE Alu 0 312 1 240 232 43 43 chr3 61442973 61443042 -156594116 + MIR SINE MIR 15 83 -179 228 308 187 17 chr3 61443111 61443459 -156593699 - L2 LINE L2 -337 2977 2571 190 161 0 0 chr3 61443799 61443830 -156593328 + MIR SINE MIR 115 145 -63 295 170 19 0 chr3 61444100 61444153 -156593005 + MIR SINE MIR 90 143 -65 999 192 5 5 chr3 61444562 61444755 -156592403 + AluJo SINE Alu 120 312 0 421 328 86 0 chr3 61445022 61445196 -156591962 + MER117 DNA MER1_type 9 197 0 280 296 40 48 chr3 61445292 61445417 -156591741 + L2 LINE L2 3147 3270 -2 237 395 12 0 chr3 61445963 61446130 -156591028 + (TG)n Simple_repeat Simple_repeat 1 169 0 207 306 69 0 chr3 61448378 61448450 -156588708 + L2 LINE L2 3193 3269 -3 359 143 0 0 chr3 61449749 61449805 -156587353 + L2 LINE L2 3253 3308 -5 35 0 0 0 chr3 61450179 61450214 -156586944 + GC_rich Low_complexity Low_complexity 1 35 0 320 211 11 11 chr3 61450269 61450364 -156586794 + (CGGG)n Simple_repeat Simple_repeat 4 98 0 40 59 0 0 chr3 61450379 61450447 -156586711 + GC_rich Low_complexity Low_complexity 1 68 0 266 229 19 38 chr3 61450501 61450606 -156586552 + G-rich Low_complexity Low_complexity 1 103 0 286 180 68 25 chr3 61452200 61452281 -156584877 + MIR3 SINE MIR 75 161 -47 202 214 0 0 chr3 61454104 61454141 -156583017 - MIR SINE MIR -113 149 114 226 200 67 0 chr3 61455207 61455267 -156581891 + MIR SINE MIR 81 144 -118 195 260 68 27 chr3 61455412 61455485 -156581673 - MIR SINE MIR -91 171 96 195 42 0 0 chr3 61456410 61456434 -156580724 + (T)n Simple_repeat Simple_repeat 1 24 0 189 0 0 0 chr3 61456568 61456589 -156580569 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 560 158 9 0 chr3 61457012 61457126 -156580032 + CT-rich Low_complexity Low_complexity 2 116 0 210 143 0 0 chr3 61457809 61457844 -156579314 + (TA)n Simple_repeat Simple_repeat 2 36 0 200 280 97 32 chr3 61459466 61459559 -156577599 + MIR SINE MIR 42 140 -122 639 0 0 0 chr3 61460897 61460968 -156576190 + (CA)n Simple_repeat Simple_repeat 2 72 0 193 330 128 6 chr3 61461390 61461569 -156575589 - L2 LINE L2 -508 2806 2606 266 136 0 0 chr3 61461912 61461956 -156575202 + MIR SINE MIR 110 153 -109 217 339 81 16 chr3 61462079 61462203 -156574955 + MIR3 SINE MIR 61 192 -16 547 300 101 4 chr3 61462820 61463047 -156574111 - MIR SINE MIR 0 262 14 182 286 18 0 chr3 61463405 61463461 -156573697 + L2 LINE L2 2920 2976 -338 319 304 104 40 chr3 61463481 61463612 -156573546 - L1MDa LINE L1 -2953 3587 3466 2219 113 10 0 chr3 61463612 61463921 -156573237 - AluSq SINE Alu -1 312 1 319 304 104 40 chr3 61463921 61464042 -156573116 - L1MDa LINE L1 -3074 3466 1235 2149 86 16 38 chr3 61464044 61464357 -156572801 - AluY SINE Alu -2 309 4 735 66 0 0 chr3 61464357 61464463 -156572695 + (TTCC)n Simple_repeat Simple_repeat 1 106 0 1791 145 66 0 chr3 61464464 61464753 -156572405 - AluSx SINE Alu -4 308 1 226 314 88 38 chr3 61465743 61465902 -156571256 - L2 LINE L2 -503 2811 2645 399 275 19 9 chr3 61468026 61468142 -156569016 - MIR SINE MIR -59 149 46 328 331 50 0 chr3 61469147 61469268 -156567890 + MIR3 SINE MIR 30 156 -52 1458 182 7 55 chr3 61469905 61470196 -156566962 + AluJo SINE Alu 20 296 -16 300 333 139 0 chr3 61470275 61470404 -156566754 + MIR SINE MIR 17 163 -99 1371 176 4 8 chr3 61471438 61471693 -156565465 - AluSq SINE Alu -57 256 3 1483 214 10 3 chr3 61472059 61472380 -156564778 + AluJo SINE Alu 1 323 0 1560 137 29 46 chr3 61472386 61472714 -156564444 + AluSq SINE Alu 1 313 0 2190 89 7 0 chr3 61472714 61473017 -156564141 + AluSp SINE Alu 1 305 -8 188 266 138 21 chr3 61473133 61473227 -156563931 - MIR SINE MIR -84 124 20 489 249 98 58 chr3 61473289 61473377 -156563781 + L1MC4 LINE L1 7750 7833 -209 2303 88 0 0 chr3 61473377 61473672 -156563486 + AluSg SINE Alu 1 295 -15 489 249 98 58 chr3 61473672 61473860 -156563298 + L1MC4 LINE L1 7833 8037 -5 2141 109 10 22 chr3 61473925 61474237 -156562921 + AluSx SINE Alu 1 308 -4 333 0 0 0 chr3 61474839 61474876 -156562282 + (TAA)n Simple_repeat Simple_repeat 2 38 0 217 232 0 42 chr3 61476130 61476225 -156560933 + (CGGGG)n Simple_repeat Simple_repeat 2 92 0 210 209 58 35 chr3 61476454 61476540 -156560618 + (CGGGG)n Simple_repeat Simple_repeat 2 89 0 792 37 92 9 chr3 61476855 61476964 -156560194 - AluSx SINE Alu -152 160 43 353 252 14 84 chr3 61476965 61477014 -156560144 - L1ME1 LINE L1 0 6166 6115 1321 110 146 16 chr3 61477014 61477268 -156559890 + AluSx SINE Alu 1 287 -25 353 252 14 84 chr3 61477268 61477361 -156559797 - L1ME1 LINE L1 -51 6115 6034 1884 102 27 0 chr3 61478535 61478791 -156558367 + AluSg SINE Alu 34 296 -14 213 39 0 0 chr3 61479083 61479109 -156558049 + (TA)n Simple_repeat Simple_repeat 2 27 0 1431 171 79 10 chr3 61479109 61479393 -156557765 - AluSx SINE Alu -5 307 1 260 222 56 0 chr3 61479448 61479538 -156557620 - L1ME1 LINE L1 -254 5867 5773 1222 128 36 2 chr3 61480008 61480417 -156556741 - MER84 LTR ERVI 0 507 2 2074 110 33 3 chr3 61480434 61480734 -156556424 + AluSx SINE Alu 1 309 -3 374 330 10 0 chr3 61480740 61480843 -156556315 + L1M4 LINE L1 4183 4286 -1860 515 211 158 0 chr3 61480960 61481074 -156556084 - MER45A DNA AcHobo -44 134 3 262 315 74 28 chr3 61481134 61481242 -156555916 - MIR SINE MIR -129 133 21 1917 112 19 0 chr3 61481580 61481759 -156555399 - AluSx SINE Alu -1 311 124 306 0 0 0 chr3 61481759 61481793 -156555365 + (TTG)n Simple_repeat Simple_repeat 3 36 0 1917 112 19 0 chr3 61481793 61481880 -156555278 - AluSx SINE Alu -188 124 40 1094 168 47 0 chr3 61481981 61482172 -156554986 + AluJo SINE Alu 1 200 -112 270 222 10 50 chr3 61483037 61483136 -156554022 + GA-rich Low_complexity Low_complexity 4 98 0 333 240 88 41 chr3 61483822 61483943 -156553215 - L1MC4 LINE L1 0 8042 7909 405 0 0 0 chr3 61483943 61483988 -156553170 + (TG)n Simple_repeat Simple_repeat 2 46 0 333 240 88 41 chr3 61483988 61484037 -156553121 - L1MC4 LINE L1 -133 7909 7864 2271 89 0 13 chr3 61484765 61485068 -156552090 + AluY SINE Alu 1 299 -12 1977 141 7 3 chr3 61485080 61485384 -156551774 + AluJo SINE Alu 1 305 -7 209 295 86 19 chr3 61487064 61487169 -156549989 + MIR3 SINE MIR 63 174 -34 206 299 0 52 chr3 61488486 61488583 -156548575 - L2 LINE L2 -2 3270 3179 1232 314 169 18 chr3 61488956 61489911 -156547247 - L2 LINE L2 -3 3310 2208 278 293 12 12 chr3 61490309 61490391 -156546767 + MIR SINE MIR 40 121 -87 336 48 0 0 chr3 61491099 61491141 -156546017 + (TG)n Simple_repeat Simple_repeat 1 42 0 283 364 23 8 chr3 61491605 61491734 -156545424 - L2 LINE L2 -3 3310 3180 185 341 61 8 chr3 61491994 61492126 -156545032 - L2 LINE L2 -706 2608 2470 244 254 42 0 chr3 61492185 61492256 -156544902 + MER96 DNA MER1_type? 4 77 -98 378 320 81 42 chr3 61492454 61492713 -156544445 - L3 LINE CR1 -32 1545 1277 412 216 39 20 chr3 61492721 61492823 -156544335 + MIR SINE MIR 103 206 -56 1516 160 11 25 chr3 61492842 61493117 -156544041 - AluJo SINE Alu -11 301 31 427 176 15 0 chr3 61493118 61493186 -156543972 - AluJ/FLAM SINE Alu -243 69 1 275 276 20 61 chr3 61494435 61494533 -156542625 + MIR SINE MIR 56 149 -113 189 264 81 23 chr3 61494609 61494696 -156542462 - MIR SINE MIR -69 139 48 204 217 72 116 chr3 61495262 61495400 -156541758 + MIR SINE MIR 16 147 -61 1963 119 6 45 chr3 61495650 61495824 -156541334 - AluSx SINE Alu -13 299 120 207 0 0 0 chr3 61495824 61495847 -156541311 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2335 71 0 0 chr3 61495847 61496130 -156541028 - AluY SINE Alu -28 283 1 1963 119 6 45 chr3 61496130 61496265 -156540893 - AluSx SINE Alu -190 122 1 190 320 200 16 chr3 61496639 61496764 -156540394 + MIR3 SINE MIR 41 188 -20 244 196 265 10 chr3 61497052 61497154 -156540004 - MIR SINE MIR -62 146 19 268 230 11 58 chr3 61499713 61499800 -156537358 - L2 LINE L2 -258 3014 2932 187 336 122 15 chr3 61499828 61499959 -156537199 + L2 LINE L2 3100 3244 -28 194 244 0 0 chr3 61500009 61500054 -156537104 + MIR SINE MIR 101 145 -117 411 236 62 87 chr3 61500147 61500422 -156536736 - L1MC4 LINE L1 -24 8018 7751 2114 89 20 0 chr3 61501230 61501523 -156535635 - AluSx SINE Alu -13 299 1 226 278 19 0 chr3 61501717 61501771 -156535387 - L2 LINE L2 -3 3269 3215 464 242 19 62 chr3 61502208 61502369 -156534789 + MIR SINE MIR 21 174 -88 586 233 24 14 chr3 61502504 61502666 -156534492 + MIR SINE MIR 35 205 -57 2166 120 10 0 chr3 61503969 61504277 -156532881 - AluSx SINE Alu -1 311 1 2269 103 7 0 chr3 61504282 61504592 -156532566 - AluSq SINE Alu -1 312 1 216 214 0 0 chr3 61506041 61506097 -156531061 + (TCTA)n Simple_repeat Simple_repeat 1 56 0 419 287 230 27 chr3 61506155 61506574 -156530584 - L2 LINE L2 -1 3271 2772 212 238 0 0 chr3 61507144 61507186 -156529972 + MIR SINE MIR 111 152 -110 389 336 22 7 chr3 61507353 61507490 -156529668 + L2 LINE L2 3174 3312 -1 2148 129 3 0 chr3 61512723 61513032 -156524126 + AluSg SINE Alu 1 310 0 1507 148 4 8 chr3 61513050 61513287 -156523871 - AluSx SINE Alu -76 236 1 739 327 127 14 chr3 61513349 61513783 -156523375 - L2 LINE L2 -5 3308 2826 228 35 0 0 chr3 61513842 61513871 -156523287 + (CCCTG)n Simple_repeat Simple_repeat 1 29 0 2046 128 3 3 chr3 61514792 61515098 -156522060 - AluSx SINE Alu -2 310 5 228 358 64 0 chr3 61515152 61515261 -156521897 - MIR SINE MIR -99 163 48 1608 164 5 101 chr3 61515757 61516045 -156521113 - L1MC4 LINE L1 -974 7068 6830 1699 173 6 28 chr3 61516045 61516363 -156520795 - AluJo SINE Alu -1 311 1 1608 164 5 101 chr3 61516363 61516488 -156520670 - L1MC4 LINE L1 -1212 6830 6695 241 167 0 0 chr3 61516488 61516530 -156520628 + MER47A DNA MER2_type 1 42 -324 2160 123 16 0 chr3 61516552 61516860 -156520298 - AluSq SINE Alu 0 313 1 1712 142 49 9 chr3 61516861 61517186 -156519972 + MER47A DNA MER2_type 29 366 0 2841 126 29 4 chr3 61517195 61517671 -156519487 - Tigger3(Golem) DNA MER2_type -1 3028 2541 1796 158 7 14 chr3 61517684 61517975 -156519183 + AluSx SINE Alu 1 289 -23 719 74 0 6 chr3 61518017 61518261 -156518897 - AluY SINE Alu -3 308 17 1270 102 11 6 chr3 61518340 61518516 -156518642 - AluSc SINE Alu -116 193 17 1446 98 10 5 chr3 61518592 61518786 -156518372 - AluSq SINE Alu -118 195 1 2235 110 3 0 chr3 61518803 61519111 -156518047 - AluSp SINE Alu -4 309 1 4441 195 12 20 chr3 61519112 61519446 -156517712 - L1P LINE L1 -814 5332 4997 1729 178 3 10 chr3 61519446 61519750 -156517408 + AluJb SINE Alu 1 302 -10 4441 195 12 20 chr3 61519750 61520494 -156516664 - L1P LINE L1 -1149 4997 4263 610 333 81 59 chr3 61520512 61520959 -156516199 - L1MCa LINE L1 -3897 2511 2075 1770 174 3 10 chr3 61520959 61521270 -156515888 - AluJo SINE Alu -3 309 1 610 333 81 59 chr3 61521270 61521286 -156515872 - L1MCa LINE L1 -4333 2075 2152 2093 130 0 0 chr3 61521286 61521585 -156515573 - AluSx SINE Alu -13 299 1 610 333 81 59 chr3 61521585 61521664 -156515494 - L1MCa LINE L1 -4255 2153 2077 421 270 123 19 chr3 61521707 61521918 -156515240 - HAL1b LINE L1 -703 645 413 2110 106 0 26 chr3 61521920 61522222 -156514936 + AluSx SINE Alu 1 294 -18 387 309 167 46 chr3 61522222 61522747 -156514411 - L1MCa LINE L1 -1205 1562 887 318 26 0 0 chr3 61522969 61523008 -156514150 + (TG)n Simple_repeat Simple_repeat 2 40 0 1811 140 14 3 chr3 61523266 61523558 -156513600 - AluJo SINE Alu -17 295 1 2120 120 0 0 chr3 61523621 61523912 -156513246 - AluSx SINE Alu -21 291 1 414 57 0 0 chr3 61524130 61524183 -156512975 + (TTCC)n Simple_repeat Simple_repeat 4 56 0 943 218 47 8 chr3 61524463 61524705 -156512453 - LTR16A1 LTR ERVL 0 457 207 634 70 0 0 chr3 61524708 61524794 -156512364 - AluJ/FRAM SINE Alu -6 306 221 230 335 86 29 chr3 61524827 61525036 -156512122 - MLT1L LTR MaLR -389 226 6 827 285 135 92 chr3 61525049 61526309 -156510849 - L2 LINE L2 -50 3263 1940 256 319 109 0 chr3 61526805 61526943 -156510215 - L2 LINE L2 -2440 874 722 249 33 0 0 chr3 61527034 61527064 -156510094 + (TGAG)n Simple_repeat Simple_repeat 2 31 0 319 274 9 18 chr3 61529264 61529377 -156507781 + (TCTCTG)n Simple_repeat Simple_repeat 2 113 0 195 129 0 0 chr3 61529418 61529449 -156507709 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 578 305 135 17 chr3 61530159 61530640 -156506518 - L2 LINE L2 -2 3270 2738 276 343 105 12 chr3 61531236 61531408 -156505750 - MIR SINE MIR -9 253 66 266 342 0 0 chr3 61531417 61531493 -156505665 - MIR SINE MIR -140 122 47 2228 96 3 3 chr3 61534026 61534327 -156502831 - AluSq SINE Alu -12 301 1 203 171 0 0 chr3 61535405 61535440 -156501718 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 389 267 45 59 chr3 61537010 61537086 -156500072 - MIR SINE MIR -62 146 126 1475 152 122 8 chr3 61537086 61537381 -156499777 + AluJo SINE Alu 1 302 0 389 267 45 59 chr3 61537381 61537468 -156499690 - MIR SINE MIR -82 126 39 2309 93 3 0 chr3 61537528 61537829 -156499329 + AluSx SINE Alu 1 302 -10 240 304 120 57 chr3 61538915 61539198 -156497960 + L2 LINE L2 2933 3233 -39 1924 125 0 58 chr3 61540208 61540535 -156496623 - AluSq SINE Alu -5 308 1 391 180 112 0 chr3 61540535 61540624 -156496534 - MER103 DNA DNA -67 99 1 579 273 127 3 chr3 61543714 61543921 -156493237 + MIR SINE MIR 21 251 -11 429 340 64 5 chr3 61546390 61546576 -156490582 - MIR SINE MIR -20 242 48 357 303 133 20 chr3 61546801 61546996 -156490162 - MLT1K LTR MaLR -184 404 188 200 262 134 60 chr3 61547622 61547771 -156489387 - L2 LINE L2 -160 3112 2953 661 268 84 9 chr3 61549419 61549652 -156487506 - MIR SINE MIR 0 262 2 420 301 142 5 chr3 61550154 61550373 -156486785 + MIR SINE MIR 7 255 -7 316 301 23 40 chr3 61550468 61550644 -156486514 - HAL1 LINE L1 -1797 710 538 2403 137 75 40 chr3 61550733 61550763 -156486395 - MER31A LTR ERV1 0 485 457 2305 71 7 0 chr3 61550763 61551057 -156486101 - AluSp SINE Alu -17 296 1 2403 137 75 40 chr3 61551057 61551495 -156485663 - MER31A LTR ERV1 -28 457 1 228 265 133 78 chr3 61554558 61554724 -156482434 + L3 LINE CR1 1382 1556 -21 431 198 0 0 chr3 61556289 61556370 -156480788 - ORSL DNA AcHobo -20 255 175 279 200 35 12 chr3 61556483 61556568 -156480590 + (CGG)n Simple_repeat Simple_repeat 2 88 0 373 222 83 21 chr3 61558236 61558380 -156478778 - ORSL DNA AcHobo -90 185 33 481 267 157 12 chr3 61558710 61558882 -156478276 + MIR SINE MIR 57 253 -9 1402 292 208 20 chr3 61559673 61561163 -156475995 + L2 LINE L2 1458 3257 -56 235 303 51 28 chr3 61562579 61562757 -156474401 - L2 LINE L2 -686 2628 2447 1609 153 92 129 chr3 61563956 61564274 -156472884 - LTR42 LTR ERVL -11 484 190 1737 158 0 37 chr3 61564274 61564596 -156472562 - AluJb SINE Alu -2 310 1 1609 153 92 129 chr3 61564596 61564780 -156472378 - LTR42 LTR ERVL -305 190 1 189 323 118 10 chr3 61565243 61565438 -156471720 - L2 LINE L2 -224 3048 2833 282 360 35 9 chr3 61567264 61567378 -156469780 + MIR SINE MIR 24 140 -68 351 294 22 59 chr3 61567665 61567801 -156469357 + MIR3 SINE MIR 11 141 -67 199 277 15 15 chr3 61568702 61568767 -156468391 + MIR SINE MIR 73 137 -125 255 337 35 0 chr3 61568770 61568856 -156468302 - L2 LINE L2 0 3272 3184 281 313 24 0 chr3 61568915 61568998 -156468160 + MER91B DNA MER1_type 46 130 -60 202 277 64 85 chr3 61569022 61569116 -156468042 + MER91B DNA MER1_type 99 190 0 217 284 62 12 chr3 61569226 61569307 -156467851 - MIR3 SINE MIR -19 189 105 186 351 27 0 chr3 61570870 61570944 -156466214 + MER5A DNA MER1_type 47 122 -67 414 231 22 0 chr3 61572229 61572320 -156464838 - L2 LINE L2 0 3313 3221 523 288 166 5 chr3 61572343 61572548 -156464610 - MIR SINE MIR -3 259 22 2211 87 0 29 chr3 61573014 61573323 -156463835 + AluSx SINE Alu 1 300 -12 1459 165 0 0 chr3 61573390 61573614 -156463544 + AluJb SINE Alu 24 247 -65 1979 107 68 0 chr3 61576820 61577100 -156460058 + AluSx SINE Alu 1 299 -13 372 317 0 16 chr3 61577403 61577526 -156459632 - MIR3 SINE MIR -54 154 34 214 333 14 0 chr3 61578923 61578995 -156458163 + MIR SINE MIR 178 250 -12 186 208 75 19 chr3 61579059 61579112 -156458046 - MIR SINE MIR -95 113 58 2071 109 17 3 chr3 61579123 61579417 -156457741 - AluSg SINE Alu -12 298 1 585 288 83 31 chr3 61581410 61581467 -156455691 - MIR SINE MIR -21 241 188 2186 95 0 26 chr3 61581467 61581772 -156455386 - AluSc SINE Alu -12 297 1 585 288 83 31 chr3 61581772 61581943 -156455215 - MIR SINE MIR -74 188 1 249 139 0 0 chr3 61588660 61588703 -156448455 + (A)n Simple_repeat Simple_repeat 1 43 0 283 174 23 0 chr3 61593343 61593429 -156443729 + (CGGGG)n Simple_repeat Simple_repeat 2 89 0 425 211 17 57 chr3 61593516 61593691 -156443467 + (CGGGG)n Simple_repeat Simple_repeat 2 169 0 1581 163 53 3 chr3 61595115 61595397 -156441761 + AluJb SINE Alu 1 296 -16 918 202 77 5 chr3 61595673 61595881 -156441277 + MIR SINE MIR 2 224 -38 715 249 31 78 chr3 61596267 61596524 -156440634 + MIR SINE MIR 12 256 -6 2270 87 0 0 chr3 61596735 61597022 -156440136 + AluSx SINE Alu 1 287 -25 1517 142 82 35 chr3 61597909 61598191 -156438967 + AluJb SINE Alu 1 295 -17 3488 201 40 33 chr3 61598340 61598381 -156438777 - L1ME2 LINE L1 0 6164 6125 1567 100 9 5 chr3 61598381 61598601 -156438557 - AluSg/x SINE Alu -15 297 77 3488 201 40 33 chr3 61598601 61599354 -156437804 - L1ME2 LINE L1 -39 6125 5379 2298 90 0 10 chr3 61599354 61599666 -156437492 - AluSc SINE Alu 0 309 1 3488 201 40 33 chr3 61599666 61599735 -156437423 - L1ME2 LINE L1 -785 5379 5312 2389 60 3 0 chr3 61599735 61600033 -156437125 + AluY SINE Alu 1 299 -12 3488 201 40 33 chr3 61600033 61601428 -156435730 - L1ME2 LINE L1 -852 5312 3666 395 228 98 57 chr3 61601579 61601702 -156435456 - HAL1b LINE L1 0 6121 1233 541 312 36 52 chr3 61601826 61601991 -156435167 + MIR SINE MIR 5 166 -96 2368 64 10 0 chr3 61601991 61602287 -156434871 - AluSx SINE Alu -13 299 1 541 312 36 52 chr3 61602287 61602371 -156434787 + MIR SINE MIR 166 250 -12 552 263 147 0 chr3 61602410 61602566 -156434592 + MIR SINE MIR 79 257 -5 2393 66 0 7 chr3 61602609 61602913 -156434245 - AluY SINE Alu -9 302 1 2146 113 3 0 chr3 61607341 61607641 -156429517 + AluSq SINE Alu 1 301 -12 721 243 119 52 chr3 61607647 61608066 -156429092 - HAL1 LINE L1 -295 2212 1766 303 28 0 0 chr3 61608526 61608562 -156428596 + (CA)n Simple_repeat Simple_repeat 1 36 0 267 31 0 0 chr3 61608707 61608739 -156428419 + (T)n Simple_repeat Simple_repeat 1 32 0 498 130 0 13 chr3 61608748 61608825 -156428333 - AluS SINE Alu -233 76 1 2126 87 47 7 chr3 61608855 61609153 -156428005 - AluSg SINE Alu 0 310 1 1670 144 63 14 chr3 61609155 61609440 -156427718 - AluJb SINE Alu -13 299 1 4060 147 91 21 chr3 61609446 61609998 -156427160 - L1MC3 LINE L1 -1 7784 7272 2159 116 16 0 chr3 61609998 61610301 -156426857 - AluSg SINE Alu 0 310 3 4060 147 91 21 chr3 61610301 61610479 -156426679 - L1MC3 LINE L1 -513 7272 7108 2261 87 13 0 chr3 61610479 61610779 -156426379 - AluSq SINE Alu -9 304 1 4060 147 91 21 chr3 61610779 61610910 -156426248 - L1MC3 LINE L1 -677 7108 6988 180 0 0 0 chr3 61610910 61610930 -156426228 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4060 147 91 21 chr3 61610930 61610979 -156426179 - L1MC3 LINE L1 -797 6988 6808 227 339 102 24 chr3 61611721 61611848 -156425310 + L2 LINE L2 3136 3272 0 2053 124 20 0 chr3 61613863 61614162 -156422996 - AluSx SINE Alu -6 306 2 231 215 0 63 chr3 61616972 61617051 -156420107 + CT-rich Low_complexity Low_complexity 3 76 0 201 196 0 0 chr3 61619711 61619757 -156417401 + (CA)n Simple_repeat Simple_repeat 1 46 0 200 286 0 99 chr3 61621505 61621596 -156415562 - L2 LINE L2 -4 3268 3187 186 43 0 0 chr3 61625097 61625120 -156412038 + (GGGA)n Simple_repeat Simple_repeat 1 23 0 515 184 0 76 chr3 61627668 61628056 -156409102 + (CA)n Simple_repeat Simple_repeat 1 358 0 270 289 178 0 chr3 61630165 61630300 -156406858 + MIR3 SINE MIR 17 175 -33 911 242 101 20 chr3 61631368 61631724 -156405434 + L1MC4a LINE L1 7424 7808 0 466 301 90 72 chr3 61631739 61632071 -156405087 + L2 LINE L2 2331 2668 -646 186 330 34 11 chr3 61632186 61632274 -156404884 + L2 LINE L2 2965 3054 -218 2048 126 3 0 chr3 61632369 61632663 -156404495 + AluSx SINE Alu 1 295 -17 2515 60 0 0 chr3 61632663 61632964 -156404194 + AluY SINE Alu 1 301 -10 223 253 141 10 chr3 61633630 61633729 -156403429 + MIR3 SINE MIR 9 120 -88 283 289 156 15 chr3 61635119 61635254 -156401904 - MIR SINE MIR -70 192 39 228 35 0 0 chr3 61637276 61637305 -156399853 + (CAGCC)n Simple_repeat Simple_repeat 3 31 0 315 186 17 0 chr3 61637588 61637647 -156399511 - MIR SINE MIR -61 147 88 226 247 91 13 chr3 61638392 61638469 -156398689 - MIR SINE MIR -85 177 95 228 198 10 62 chr3 61638662 61638758 -156398400 + G-rich Low_complexity Low_complexity 6 96 0 400 254 223 45 chr3 61640216 61640436 -156396722 - MIR SINE MIR -2 260 2 522 326 107 8 chr3 61642539 61642623 -156394535 + L1ME4a LINE L1 5510 5584 -537 2269 96 0 0 chr3 61642623 61642916 -156394242 - AluSx SINE Alu -19 293 1 522 326 107 8 chr3 61642916 61643073 -156394085 + L1ME4a LINE L1 5584 5775 -346 2263 115 0 16 chr3 61643081 61643395 -156393763 + AluSq SINE Alu 1 309 -4 268 159 0 0 chr3 61643411 61643455 -156393703 + Alu SINE Alu 1 44 -264 1835 169 7 7 chr3 61643583 61643884 -156393274 - AluJo SINE Alu -11 301 1 237 284 47 27 chr3 61643887 61644035 -156393123 + L1ME4a LINE L1 5910 6060 -61 1971 134 20 3 chr3 61644139 61644445 -156392713 + AluSx SINE Alu 1 311 -1 2538 50 0 0 chr3 61644764 61645065 -156392093 + AluY SINE Alu 1 301 -10 1240 154 43 10 chr3 61645416 61645624 -156391534 - MER20 DNA MER1_type -4 215 1 2250 89 7 7 chr3 61645815 61646118 -156391040 - AluSq SINE Alu -10 303 1 4079 166 40 17 chr3 61646128 61646895 -156390263 - L1MB7 LINE L1 0 6184 5436 2269 105 0 10 chr3 61646895 61647209 -156389949 - AluSx SINE Alu -1 311 1 4079 166 40 17 chr3 61647209 61647297 -156389861 - L1MB7 LINE L1 -748 5436 5352 2066 122 10 3 chr3 61647297 61647601 -156389557 + AluSx SINE Alu 1 306 -6 4079 166 40 17 chr3 61647601 61647693 -156389465 - L1MB7 LINE L1 -832 5352 5208 2157 129 3 0 chr3 61647695 61648006 -156389152 - AluSx SINE Alu 0 312 1 1078 105 0 0 chr3 61648007 61648150 -156389008 - AluSq/x SINE Alu -170 143 1 648 194 28 0 chr3 61648151 61648308 -156388850 - L1MB7 LINE L1 -944 5202 5042 2073 131 0 0 chr3 61648315 61648612 -156388546 - AluJb SINE Alu -15 297 1 2170 104 3 3 chr3 61649466 61649764 -156387394 + AluSg SINE Alu 1 298 -12 2268 104 7 0 chr3 61650172 61650481 -156386677 - AluSq SINE Alu -2 311 1 703 157 0 9 chr3 61650973 61651088 -156386070 - FLAM_A SINE Alu -9 133 20 2241 92 3 0 chr3 61651160 61651452 -156385706 + AluSx SINE Alu 1 293 -19 516 308 114 5 chr3 61652065 61652276 -156384882 + L1M4 LINE L1 5100 5333 -813 1848 142 0 47 chr3 61652668 61652814 -156384344 + AluJo SINE Alu 2 127 -185 2067 137 0 3 chr3 61652814 61653120 -156384038 + AluSx SINE Alu 1 305 -7 1848 142 0 47 chr3 61653120 61653290 -156383868 + AluJo SINE Alu 127 303 -9 649 308 68 4 chr3 61656107 61656341 -156380817 - MIR SINE MIR -13 249 1 2047 134 0 16 chr3 61657288 61657464 -156379694 - AluSx SINE Alu -4 308 138 2499 48 0 0 chr3 61657464 61657778 -156379380 - AluY SINE Alu 0 311 1 2047 134 0 16 chr3 61657778 61657914 -156379244 - AluSx SINE Alu -174 138 1 963 128 0 0 chr3 61658257 61658390 -156378768 + FLAM_C SINE Alu 1 133 0 1773 152 10 24 chr3 61658740 61659036 -156378122 + AluJo SINE Alu 1 292 -20 2043 135 0 3 chr3 61659037 61659333 -156377825 + AluSx SINE Alu 1 295 -17 2308 83 0 3 chr3 61659934 61660234 -156376924 + AluSx SINE Alu 1 299 -13 313 254 123 43 chr3 61663113 61663251 -156373907 + MIR SINE MIR 33 181 -81 332 253 148 10 chr3 61665603 61665746 -156371412 + MIR SINE MIR 3 143 -65 529 262 0 0 chr3 61665751 61665877 -156371281 + HsTC2 DNA Tc2 1 126 -1772 187 333 68 0 chr3 61666176 61666293 -156370865 - L2 LINE L2 -220 3052 2928 713 320 102 31 chr3 61666989 61667585 -156369573 - L1MC/D LINE L1 -679 5485 4972 1934 128 3 23 chr3 61669293 61669598 -156367560 - AluSx SINE Alu -13 299 1 1256 115 78 0 chr3 61669612 61669803 -156367355 - AluSg/x SINE Alu -17 295 90 240 86 0 0 chr3 61670583 61670618 -156366540 + (GGA)n Simple_repeat Simple_repeat 2 36 0 352 96 0 41 chr3 61670660 61670733 -156366425 + (GGA)n Simple_repeat Simple_repeat 1 70 0 744 114 19 0 chr3 61672257 61672362 -156364796 - FLAM_C SINE Alu -36 107 1 222 284 0 0 chr3 61672558 61672718 -156364440 + (CCCCAG)n Simple_repeat Simple_repeat 1 160 0 222 171 0 0 chr3 61676009 61676050 -156361108 + (CTG)n Simple_repeat Simple_repeat 1 41 0 348 244 0 0 chr3 61677504 61677582 -156359576 + MIR SINE MIR 88 165 -97 236 346 87 33 chr3 61677608 61677940 -156359218 - L2 LINE L2 -58 3214 2865 247 284 142 17 chr3 61679552 61679673 -156357485 - MIR SINE MIR -62 146 19 1546 166 107 31 chr3 61680087 61680190 -156356968 - MER2 DNA MER2_type 0 344 250 2024 96 43 0 chr3 61680190 61680472 -156356686 - AluSx SINE Alu -18 294 1 1546 166 107 31 chr3 61680472 61680590 -156356568 - MER2 DNA MER2_type -94 250 142 2055 131 0 0 chr3 61680590 61680895 -156356263 - AluSx SINE Alu -7 305 1 1546 166 107 31 chr3 61680895 61680991 -156356167 - MER2 DNA MER2_type -202 142 2 218 292 173 31 chr3 61682566 61682792 -156354366 + L2 LINE L2 2450 2707 -607 2730 10 0 0 chr3 61682800 61683106 -156354052 + AluYa5 SINE Alu 1 306 -5 1087 138 0 0 chr3 61683107 61683267 -156353891 + AluJo/FRAM SINE Alu 135 294 -18 292 333 107 13 chr3 61683400 61683550 -156353608 + L2 LINE L2 2916 3079 -193 214 245 136 82 chr3 61683897 61684044 -156353114 + MIR3 SINE MIR 19 173 -35 235 226 0 48 chr3 61684664 61684726 -156352432 - L2 LINE L2 -20 3293 3235 188 220 51 0 chr3 61685604 61685663 -156351495 + L2 LINE L2 3030 3091 -181 336 252 34 42 chr3 61686770 61686889 -156350269 + MIR SINE MIR 76 193 -69 2196 114 0 0 chr3 61690230 61690527 -156346631 - AluSx SINE Alu -15 297 1 333 325 87 12 chr3 61690541 61690793 -156346365 + L2 LINE L2 2839 3109 -204 227 290 75 21 chr3 61691602 61691695 -156345463 + MIR3 SINE MIR 70 167 -41 22 0 0 0 chr3 61691696 61691718 -156345440 + AT_rich Low_complexity Low_complexity 1 22 0 2074 127 0 0 chr3 61691722 61692037 -156345121 + AluSx SINE Alu 1 315 0 277 231 149 16 chr3 61692707 61692828 -156344330 + L3b LINE CR1 1255 1391 -192 311 370 10 0 chr3 61693867 61693967 -156343191 - L2 LINE L2 -2 3311 3211 792 286 37 52 chr3 61748759 61749108 -156288050 - L1MC/D LINE L1 -2016 5792 5449 324 143 0 0 chr3 61749113 61749169 -156287989 + (A)n Simple_repeat Simple_repeat 1 56 0 1603 114 0 67 chr3 61749241 61749495 -156287663 - AluSx SINE Alu -75 237 1 1961 166 0 0 chr3 61749530 61749825 -156287333 - AluSx SINE Alu -17 295 1 693 284 134 48 chr3 61749855 61750438 -156286720 - L1MC/D LINE L1 -813 5333 4802 1864 124 17 40 chr3 61750438 61750737 -156286421 - AluJb SINE Alu -17 295 4 693 284 134 48 chr3 61750737 61750762 -156286396 - L1MC/D LINE L1 -1344 4802 4781 2307 91 0 0 chr3 61750762 61751058 -156286100 - AluY SINE Alu -15 296 1 693 284 134 48 chr3 61751058 61751305 -156285853 - L1MC/D LINE L1 -1365 4781 4403 274 256 77 0 chr3 61751433 61751511 -156285647 - L1MC/D LINE L1 -1983 4163 4080 2176 118 3 16 chr3 61751512 61751825 -156285333 - AluSx SINE Alu -3 309 1 523 194 49 21 chr3 61752235 61752379 -156284779 - L1M4 LINE L1 -1540 4606 4459 723 203 23 0 chr3 61752431 61752564 -156284594 - FLAM_C SINE Alu 0 143 8 2268 100 0 3 chr3 61752591 61752890 -156284268 + AluSc SINE Alu 1 298 -11 2262 95 3 10 chr3 61752894 61753200 -156283958 + AluSc SINE Alu 1 304 -5 1542 174 9 63 chr3 61753287 61753603 -156283555 + AluJo SINE Alu 1 299 -13 310 243 81 52 chr3 61753612 61753748 -156283410 - L1M4 LINE L1 -1865 4281 4142 2024 134 3 13 chr3 61753925 61754224 -156282934 - AluSx SINE Alu -16 296 1 283 194 32 0 chr3 61754590 61754652 -156282506 - MER94 DNA DNA -43 91 28 208 221 299 13 chr3 61754673 61754750 -156282408 + MIR SINE MIR 37 135 -73 2176 114 0 25 chr3 61754826 61755143 -156282015 - AluSx SINE Alu -3 309 1 3625 226 47 49 chr3 61755191 61755622 -156281536 + L1M4 LINE L1 2 433 -6109 1655 188 98 19 chr3 61755622 61755989 -156281169 - MSTD LTR MaLR 0 396 1 3625 226 47 49 chr3 61755989 61756456 -156280702 + L1M4 LINE L1 433 900 -5642 2001 139 0 7 chr3 61756456 61756751 -156280407 - AluJb SINE Alu -19 293 1 3625 226 47 49 chr3 61756751 61756767 -156280391 + L1M4 LINE L1 900 915 -5627 248 0 0 30 chr3 61756767 61756800 -156280358 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3625 226 47 49 chr3 61756800 61757079 -156280079 + L1M4 LINE L1 915 1193 -5349 1699 143 38 31 chr3 61757079 61757366 -156279792 - AluSx SINE Alu -23 289 1 3625 226 47 49 chr3 61757366 61757763 -156279395 + L1M4 LINE L1 1193 1618 -4924 381 252 3 13 chr3 61757781 61757894 -156279264 + FRAM/FAM SINE Alu 1 71 -95 410 259 78 30 chr3 61757896 61758062 -156279096 + L2 LINE L2 3135 3308 -5 2102 142 0 0 chr3 61758701 61759010 -156278148 + AluSx SINE Alu 1 309 -3 1491 272 117 24 chr3 61759128 61759953 -156277205 + L2 LINE L2 2400 3312 -1 261 294 119 32 chr3 61759952 61760078 -156277080 - MIR3 SINE MIR -71 137 1 * 295 263 32 32 chr3 61760122 61760217 -156276941 - L2 LINE L2 0 3272 3178 263 195 65 0 chr3 61760877 61760954 -156276204 + FLAM_C SINE Alu 27 108 -25 1917 150 16 13 chr3 61761369 61761675 -156275483 - AluJo SINE Alu -5 307 1 34 55 0 0 chr3 61761870 61761925 -156275233 + AT_rich Low_complexity Low_complexity 1 55 0 1885 147 7 36 chr3 61763193 61763500 -156273658 + AluJb SINE Alu 1 298 -14 838 196 4 69 chr3 61763505 61763750 -156273408 + L1MB4 LINE L1 4762 4990 -1156 2147 95 0 10 chr3 61763751 61764045 -156273113 + AluSc SINE Alu 1 291 -18 2291 88 0 7 chr3 61764058 61764355 -156272803 + AluSx SINE Alu 1 295 -17 3746 169 53 43 chr3 61764356 61764603 -156272555 + L1MB4 LINE L1 5142 5385 -795 2234 75 0 0 chr3 61764603 61764914 -156272244 + AluY SINE Alu 1 311 0 3746 169 53 43 chr3 61764914 61765645 -156271513 + L1MB4 LINE L1 5385 6136 -44 2240 76 4 0 chr3 61765645 61765920 -156271238 + AluSx SINE Alu 25 300 -12 3746 169 53 43 chr3 61765920 61765966 -156271192 + L1MB4 LINE L1 6136 6180 0 244 267 0 13 chr3 61765970 61766045 -156271113 - L1MC4a LINE L1 -1885 5923 5850 841 279 29 40 chr3 61766048 61766396 -156270762 - L1MC4a LINE L1 -2016 5792 5449 269 193 0 0 chr3 61766400 61766457 -156270701 + A-rich Low_complexity Low_complexity 1 57 0 1806 92 0 4 chr3 61766532 61766770 -156270388 - AluSx SINE Alu -75 237 1 713 189 0 0 chr3 61766774 61766896 -156270262 - FLAM_C SINE Alu -10 133 12 1739 177 35 15 chr3 61766932 61767328 -156269830 + L1MB4 LINE L1 5771 6174 -6 299 130 159 0 chr3 61767348 61767417 -156269741 + L1MB8 LINE L1 6093 6172 -6 305 197 145 13 chr3 61767427 61767503 -156269655 + HAL1 LINE L1 1105 1190 -1317 587 168 0 0 chr3 61767505 61767600 -156269558 + AluS SINE Alu 1 95 -218 310 226 91 67 chr3 61767767 61767811 -156269347 - L1MC5 LINE L1 -36 7925 7884 1846 147 0 29 chr3 61767811 61768117 -156269041 + AluJb SINE Alu 1 297 -15 310 226 91 67 chr3 61768117 61768280 -156268878 - L1MC5 LINE L1 -77 7884 7713 376 289 26 55 chr3 61768334 61768532 -156268626 - L1MC5 LINE L1 -246 7715 7513 2095 127 0 7 chr3 61768532 61768832 -156268326 - AluSx SINE Alu -13 299 2 376 289 26 55 chr3 61768832 61769051 -156268107 - L1MC5 LINE L1 -448 7513 7310 1085 196 88 134 chr3 61769122 61769172 -156267986 - L1MC5 LINE L1 -390 7571 7520 2423 79 3 7 chr3 61769172 61769477 -156267681 - AluSg SINE Alu -6 304 1 1085 196 88 134 chr3 61769477 61769627 -156267531 - L1MC5 LINE L1 -441 7520 7365 1653 186 7 7 chr3 61769627 61769933 -156267225 - AluJb SINE Alu -6 306 1 1085 196 88 134 chr3 61769933 61770495 -156266663 - L1MC5 LINE L1 -596 7365 6852 2259 112 3 3 chr3 61770495 61770798 -156266360 - AluSx SINE Alu -9 303 1 1085 196 88 134 chr3 61770798 61770919 -156266239 - L1MC5 LINE L1 -1109 6852 6727 328 213 7 116 chr3 61770988 61771143 -156266015 - L1MC4a LINE L1 -1128 6680 6543 185 324 128 10 chr3 61772755 61772857 -156264301 - L2 LINE L2 -8 3264 3151 309 339 65 18 chr3 61773014 61773182 -156263976 - MIR SINE MIR -16 246 71 410 241 89 9 chr3 61773683 61773795 -156263363 - L2 LINE L2 0 3313 3193 1736 170 3 33 chr3 61775146 61775452 -156261706 + AluJo SINE Alu 1 297 -15 550 231 0 0 chr3 61775611 61775728 -156261430 + AluJb SINE Alu 171 287 -25 2333 100 0 0 chr3 61776210 61776510 -156260648 - AluSc SINE Alu -9 300 1 21 0 0 0 chr3 61776566 61776587 -156260571 + AT_rich Low_complexity Low_complexity 1 21 0 3709 171 28 58 chr3 61776795 61777667 -156259491 + L1MB3 LINE L1 5287 6133 -50 1941 131 0 42 chr3 61777667 61777980 -156259178 + AluSx SINE Alu 1 300 -12 3709 171 28 58 chr3 61777980 61778006 -156259152 + L1MB3 LINE L1 6133 6158 -25 1374 170 101 25 chr3 61778089 61778365 -156258793 - AluJo SINE Alu -15 297 1 400 154 0 0 chr3 61778542 61778607 -156258551 + L1M3 LINE L1 5664 5728 -443 21 0 0 0 chr3 61778933 61778954 -156258204 + AT_rich Low_complexity Low_complexity 1 21 0 1010 196 0 6 chr3 61778956 61779135 -156258023 + AluSg/x SINE Alu 118 295 -15 909 134 0 15 chr3 61779343 61779477 -156257681 - FLAM_C SINE Alu 0 133 2 26 0 0 0 chr3 61779737 61779763 -156257395 + AT_rich Low_complexity Low_complexity 1 26 0 1062 173 61 5 chr3 61780109 61780306 -156256852 + MER3 DNA MER1_type 1 208 -1 1946 153 0 3 chr3 61781895 61782189 -156254969 + AluJb SINE Alu 1 293 -19 266 107 93 0 chr3 61782191 61782266 -156254892 + (TA)n Simple_repeat Simple_repeat 2 83 0 2308 99 0 10 chr3 61784789 61785091 -156252067 + AluSq SINE Alu 1 299 -14 665 253 136 14 chr3 61786834 61787055 -156250103 + MIR SINE MIR 12 259 -3 1064 176 0 0 chr3 61787360 61787525 -156249633 - FAM SINE Alu -10 165 1 291 320 109 0 chr3 61787580 61787727 -156249431 + MIR SINE MIR 51 213 -49 21 36 0 0 chr3 61787795 61787823 -156249335 + AT_rich Low_complexity Low_complexity 1 28 0 424 232 53 0 chr3 61788091 61788186 -156248972 - MER91B DNA MER1_type -1 189 90 2279 110 7 0 chr3 61788299 61788609 -156248549 - AluSx SINE Alu 0 312 1 1693 181 28 0 chr3 61788609 61788897 -156248261 - AluJo SINE Alu -16 296 1 2502 67 0 0 chr3 61789208 61789507 -156247651 + AluY SINE Alu 5 303 -8 2057 121 0 24 chr3 61789842 61790139 -156247019 - AluSx SINE Alu -18 294 5 249 234 52 13 chr3 61790181 61790258 -156246900 + L1M4 LINE L1 5004 5083 -1063 778 167 35 17 chr3 61790267 61790441 -156246717 + L1MB8 LINE L1 6002 6178 0 2236 92 0 0 chr3 61790701 61791012 -156246146 - AluY SINE Alu 0 311 1 1509 201 28 10 chr3 61791014 61791303 -156245855 - AluJo SINE Alu -18 294 1 187 54 54 27 chr3 61791321 61791358 -156245800 + T-rich Low_complexity Low_complexity 5 42 0 1905 148 32 0 chr3 61791362 61791640 -156245518 - AluJb SINE Alu -24 288 2 24 0 0 0 chr3 61791820 61791844 -156245314 + AT_rich Low_complexity Low_complexity 1 24 0 2280 113 3 0 chr3 61792017 61792326 -156244832 + AluSq SINE Alu 1 310 -3 2458 58 6 10 chr3 61793289 61793600 -156243558 + AluY SINE Alu 1 310 -1 266 390 155 7 chr3 61793625 61793902 -156243256 - L2 LINE L2 0 3272 2955 237 289 0 62 chr3 61793995 61794092 -156243066 - L3 LINE CR1 -494 1083 993 781 175 7 0 chr3 61794101 61794238 -156242920 + AluJo SINE Alu 87 224 -88 798 178 0 15 chr3 61794436 61794571 -156242587 + FLAM_A SINE Alu 1 133 0 2237 112 0 0 chr3 61795911 61796205 -156240953 + AluSg SINE Alu 1 294 -16 2235 78 18 3 chr3 61796320 61796622 -156240536 + AluSq SINE Alu 1 306 0 234 315 92 26 chr3 61796651 61796997 -156240161 + L1M4 LINE L1 3366 3734 -2412 1921 169 7 0 chr3 61797392 61797694 -156239464 + AluJb SINE Alu 4 307 -5 22 0 0 0 chr3 61798118 61798140 -156239018 + AT_rich Low_complexity Low_complexity 1 22 0 695 202 0 0 chr3 61798202 61798326 -156238832 + FLAM_C SINE Alu 3 126 -17 2089 123 7 3 chr3 61798716 61799017 -156238141 - AluSx SINE Alu -10 302 1 2549 66 0 0 chr3 61799024 61799329 -156237829 - AluY SINE Alu -6 305 1 2138 152 0 0 chr3 61799658 61799968 -156237190 - AluSx SINE Alu -2 310 1 25 31 0 0 chr3 61800352 61800384 -156236774 + AT_rich Low_complexity Low_complexity 1 32 0 404 201 27 94 chr3 61800654 61800803 -156236355 + MER5B DNA MER1_type 40 178 0 2432 59 0 0 chr3 61801509 61801799 -156235359 + AluY SINE Alu 1 290 -21 761 289 80 0 chr3 61801977 61802202 -156234956 - MIR SINE MIR -18 244 2 265 252 59 5 chr3 61803416 61803523 -156233635 - MIR3 SINE MIR -22 186 72 2438 67 0 32 chr3 61803689 61803856 -156233302 - AluSq SINE Alu -10 303 149 2269 86 10 0 chr3 61803856 61804146 -156233012 - AluSp SINE Alu -20 293 1 2438 67 0 32 chr3 61804146 61804291 -156232867 - AluSq SINE Alu -164 149 1 1791 172 39 3 chr3 61804336 61804667 -156232491 + MER2 DNA MER2_type 2 344 0 1536 142 4 9 chr3 61806297 61806523 -156230635 + AluSg/x SINE Alu 73 297 -13 262 232 0 0 chr3 61806573 61806629 -156230529 - L1ME LINE L1 -436 5685 5630 771 160 56 0 chr3 61806687 61806812 -156230346 - FLAM_C SINE Alu 0 133 2 13494 175 35 62 chr3 61806813 61807563 -156229595 - L1P LINE L1 -1492 4654 3886 2218 108 0 3 chr3 61807563 61807868 -156229290 - AluSg SINE Alu -6 304 1 2235 85 7 26 chr3 61807868 61808173 -156228985 - AluSg SINE Alu -9 301 3 2272 97 7 16 chr3 61808173 61808482 -156228676 - AluSx SINE Alu -6 306 1 13494 175 35 62 chr3 61808482 61809306 -156227852 - L1P LINE L1 -2258 3888 3044 1605 181 57 4 chr3 61809306 61809587 -156227571 - AluSx SINE Alu -16 296 1 13494 175 35 62 chr3 61809587 61810116 -156227042 - L1P LINE L1 -3102 3044 2503 703 211 0 0 chr3 61810116 61810230 -156226928 - FLAM_C SINE Alu -27 116 3 13494 175 35 62 chr3 61810230 61811139 -156226019 - L1P LINE L1 -3643 2503 1607 2031 91 3 14 chr3 61811135 61811421 -156225737 - L1PA13 LINE L1 -5057 1730 1448 * 3720 155 67 3 chr3 61811412 61812208 -156224950 - L1M1 LINE L1 -743 6822 6055 2693 55 0 0 chr3 61812208 61812517 -156224641 + AluSc SINE Alu 1 309 0 5279 129 92 18 chr3 61812550 61813428 -156223730 - L1M1 LINE L1 -6607 958 16 2448 78 0 0 chr3 61814105 61814399 -156222759 - AluSc SINE Alu -15 294 1 21 0 0 0 chr3 61814474 61814495 -156222663 + AT_rich Low_complexity Low_complexity 1 21 0 1457 165 55 16 chr3 61814779 61815034 -156222124 - MER44D DNA MER2_type 0 605 469 806 200 0 14 chr3 61815034 61815179 -156221979 - FLAM_C SINE Alu 0 143 1 2676 132 73 37 chr3 61815180 61815644 -156221514 - MER44D DNA MER2_type -222 483 3 3807 171 56 64 chr3 61816249 61817174 -156219984 + L1MB8 LINE L1 4777 5708 -470 302 44 0 22 chr3 61817174 61817219 -156219939 + (TA)n Simple_repeat Simple_repeat 2 45 0 3807 171 56 64 chr3 61817219 61817633 -156219525 + L1MB8 LINE L1 5708 6110 -68 2150 100 28 0 chr3 61817633 61817923 -156219235 - AluSg SINE Alu -12 298 1 3807 171 56 64 chr3 61817923 61817986 -156219172 + L1MB8 LINE L1 6110 6172 -6 207 0 0 0 chr3 61818030 61818053 -156219105 + (CAA)n Simple_repeat Simple_repeat 2 24 0 310 193 18 0 chr3 61818451 61818508 -156218650 - MIR SINE MIR -21 241 184 193 208 222 28 chr3 61818592 61818664 -156218494 - MIR SINE MIR -8 254 169 488 224 33 93 chr3 61819184 61819367 -156217791 + LTR67 LTR ERVL 352 523 -34 2156 110 6 22 chr3 61819796 61820113 -156217045 + AluSx SINE Alu 1 312 0 248 330 148 6 chr3 61820352 61820528 -156216630 - MIR SINE MIR -3 259 59 223 280 13 40 chr3 61820634 61820681 -156216477 - L2 LINE L2 0 3313 3269 1006 223 58 0 chr3 61820681 61820905 -156216253 + MIR SINE MIR 1 237 -25 197 250 19 19 chr3 61820873 61820925 -156216233 + L2 LINE L2 3210 3261 -11 * 760 102 19 0 chr3 61821089 61821197 -156215961 + L1MA3 LINE L1 6196 6305 0 2414 93 0 0 chr3 61821819 61822119 -156215039 + AluSq SINE Alu 1 300 -13 2129 108 0 14 chr3 61822124 61822421 -156214737 + AluSc SINE Alu 1 293 -16 2102 141 0 0 chr3 61822433 61822731 -156214427 + AluSx SINE Alu 1 298 -14 2285 114 3 0 chr3 61823025 61823333 -156213825 + AluSq SINE Alu 1 309 -4 2305 95 7 0 chr3 61823347 61823641 -156213517 + AluSg SINE Alu 1 296 -14 1027 171 52 43 chr3 61824523 61824734 -156212424 - AluJo SINE Alu -30 282 70 3432 137 56 17 chr3 61824779 61825369 -156211789 - L1MB3 LINE L1 0 6183 5571 2228 117 0 10 chr3 61826099 61826406 -156210752 + AluSx SINE Alu 1 304 -8 2230 146 39 73 chr3 61826451 61826504 -156210654 + L1MB3 LINE L1 5731 5784 -399 845 168 0 0 chr3 61826504 61826629 -156210529 + FLAM_A SINE Alu 5 129 -4 2230 146 39 73 chr3 61826629 61827042 -156210116 + L1MB3 LINE L1 5784 6181 -2 2089 143 0 0 chr3 61827186 61827487 -156209671 - AluSx SINE Alu -11 301 1 2392 77 0 26 chr3 61827498 61827810 -156209348 - AluSp SINE Alu -9 304 1 1824 118 68 7 chr3 61828130 61828409 -156208749 - AluSg SINE Alu -14 296 1 1398 190 0 8 chr3 61829169 61829411 -156207747 - AluJo SINE Alu -42 270 31 299 191 22 22 chr3 61829810 61829899 -156207259 + (TA)n Simple_repeat Simple_repeat 1 89 0 207 0 0 0 chr3 61829907 61829930 -156207228 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 2228 111 0 0 chr3 61829931 61830220 -156206938 - AluSx SINE Alu -23 289 1 2226 116 3 0 chr3 61830422 61830732 -156206426 - AluSx SINE Alu -1 311 1 622 299 82 42 chr3 61830746 61831147 -156206011 - L2 LINE L2 -5 3308 2892 2497 73 0 22 chr3 61831952 61832268 -156204890 + AluSc SINE Alu 1 309 0 503 290 72 96 chr3 61832913 61833184 -156203974 + L1MEd LINE L1 849 1125 -5247 2307 94 0 3 chr3 61833184 61833482 -156203676 + AluY SINE Alu 1 297 -14 965 214 0 0 chr3 61833482 61833665 -156203493 + FAM SINE Alu 1 47 0 503 290 72 96 chr3 61833665 61833860 -156203298 + L1MEd LINE L1 1124 1305 -5067 2247 98 7 0 chr3 61833860 61834165 -156202993 + AluSx SINE Alu 2 308 -4 503 290 72 96 chr3 61834165 61834247 -156202911 + L1MEd LINE L1 1305 1387 -4985 242 302 50 16 chr3 61834253 61834506 -156202652 + L1MEd LINE L1 1290 1761 -982 1596 197 7 30 chr3 61834574 61834869 -156202289 - AluJo SINE Alu -24 288 1 2205 130 26 32 chr3 61834885 61835224 -156201934 + MER1B DNA MER1_type 1 337 0 639 256 0 0 chr3 61835541 61835662 -156201496 + FLAM_A SINE Alu 2 122 -11 2176 92 24 3 chr3 61835665 61835957 -156201201 + AluSx SINE Alu 1 298 -14 1946 148 7 3 chr3 61836015 61836313 -156200845 + AluJb SINE Alu 1 299 -13 423 238 85 123 chr3 61836314 61836875 -156200283 + L1M4 LINE L1 4744 5324 -822 2256 110 23 0 chr3 61836875 61837174 -156199984 + AluSq SINE Alu 1 306 -7 960 143 0 0 chr3 61837182 61837315 -156199843 + FLAM_A SINE Alu 1 133 0 423 238 85 123 chr3 61837315 61837413 -156199745 + L1M4 LINE L1 5331 5387 -759 1889 159 0 3 chr3 61837417 61837713 -156199445 + AluJb SINE Alu 1 295 -17 22 0 0 0 chr3 61838052 61838074 -156199084 + AT_rich Low_complexity Low_complexity 1 22 0 224 62 0 104 chr3 61838187 61838235 -156198923 + (A)n Simple_repeat Simple_repeat 1 43 0 521 187 127 15 chr3 61838921 61839055 -156198103 - MER105 DNA DNA -46 158 10 29 0 0 0 chr3 61839081 61839110 -156198048 + AT_rich Low_complexity Low_complexity 1 29 0 517 200 146 0 chr3 61839142 61839272 -156197886 - L1MC4 LINE L1 -142 7900 7752 256 224 0 17 chr3 61839282 61839340 -156197818 + Tigger2 DNA MER2_type 27 83 -2635 821 211 29 0 chr3 61840123 61840294 -156196864 + FAM SINE Alu 1 45 -4 344 258 320 37 chr3 61840297 61840619 -156196539 + MLT1J LTR MaLR 99 511 0 328 308 22 11 chr3 61840889 61840980 -156196178 + MIR SINE MIR 10 101 -161 2181 177 69 31 chr3 61841361 61841842 -156195316 - MLT1D LTR MaLR -6 499 1 2342 96 3 10 chr3 61841884 61842198 -156194960 - AluSp SINE Alu -1 312 1 392 100 33 0 chr3 61842601 61842661 -156194497 - MLT1D LTR MaLR -1 504 443 801 183 0 0 chr3 61842665 61842796 -156194362 + FLAM_C SINE Alu 6 136 -7 910 150 20 0 chr3 61842796 61842949 -156194209 - FRAM SINE Alu -25 151 1 608 157 0 0 chr3 61842982 61843071 -156194087 + AluJb SINE Alu 168 256 -56 312 282 24 40 chr3 61843083 61843207 -156193951 + L1M4 LINE L1 3151 3272 -2874 2254 113 7 3 chr3 61843255 61843565 -156193593 + AluSq SINE Alu 1 311 -2 848 134 8 22 chr3 61844423 61844557 -156192601 + AluJb SINE Alu 1 132 -180 267 152 0 0 chr3 61844561 61844607 -156192551 + (TA)n Simple_repeat Simple_repeat 2 47 0 296 194 51 10 chr3 61844671 61844769 -156192389 + (TA)n Simple_repeat Simple_repeat 2 103 0 695 180 18 0 chr3 61844789 61844900 -156192258 + AluJb SINE Alu 185 297 -15 2321 196 54 9 chr3 61844917 61845453 -156191705 + L1M4 LINE L1 3253 3812 -2334 479 171 0 0 chr3 61845470 61845552 -156191606 - L1 LINE L1 -2038 4108 4027 1278 188 26 46 chr3 61845553 61845753 -156191405 + L1M4 LINE L1 4753 4947 -1199 2838 7 0 0 chr3 61845753 61846056 -156191102 + AluYa5 SINE Alu 1 303 -8 1278 188 26 46 chr3 61846056 61846158 -156191000 + L1M4 LINE L1 4947 5049 -1097 2820 94 6 3 chr3 61846160 61846512 -156190646 + THE1A LTR MaLR 3 355 0 3640 65 13 0 chr3 61846512 61846985 -156190173 + THE1A-int LTR MaLR 1 580 -1109 713 216 30 0 chr3 61847008 61847175 -156189983 + L1M4 LINE L1 5045 5216 -930 1898 98 0 56 chr3 61847175 61847309 -156189849 - AluSx SINE Alu -43 269 158 2410 95 0 0 chr3 61847309 61847613 -156189545 - AluSq SINE Alu -9 304 1 1898 98 0 56 chr3 61847613 61847763 -156189395 - AluSx SINE Alu -154 158 1 1392 195 10 53 chr3 61847781 61848033 -156189125 - AluJo SINE Alu -22 290 52 768 211 0 0 chr3 61848033 61848166 -156188992 - FLAM_A SINE Alu 0 133 1 1392 195 10 53 chr3 61848166 61848216 -156188942 - AluJo SINE Alu -260 52 1 295 315 170 25 chr3 61848797 61849038 -156188120 + L2 LINE L2 2699 2974 -340 492 265 53 37 chr3 61849075 61849264 -156187894 + L2 LINE L2 3118 3309 -4 1744 87 4 17 chr3 61850552 61850809 -156186349 - AluSc SINE Alu 0 304 51 1423 157 9 144 chr3 61851544 61851840 -156185318 + L1MC3 LINE L1 5514 5848 -336 1986 138 24 0 chr3 61851840 61852129 -156185029 + AluSx SINE Alu 1 296 -16 1423 157 9 144 chr3 61852129 61852220 -156184938 + L1MC3 LINE L1 5848 5950 -234 1491 142 51 54 chr3 61852220 61852515 -156184643 + AluJo SINE Alu 1 294 -18 1423 157 9 144 chr3 61852515 61853294 -156183864 + L1MC3 LINE L1 5949 5793 -391 2231 103 0 41 chr3 61852603 61852748 -156184410 + AluSp SINE Alu 1 150 -163 2422 74 0 7 chr3 61852748 61853047 -156184111 + AluY SINE Alu 1 297 -14 2231 103 0 41 chr3 61853047 61853221 -156183937 + AluSp SINE Alu 150 307 -6 1267 168 50 21 chr3 61853221 61853383 -156183775 + L1MB7 LINE L1 5885 6058 -126 1258 146 0 10 chr3 61853988 61854193 -156182965 + L1M3 LINE L1 5585 5787 -393 2058 150 0 0 chr3 61854194 61854488 -156182670 + AluSx SINE Alu 2 295 -17 1640 209 0 0 chr3 61854634 61854917 -156182241 - AluJb SINE Alu -27 285 3 1828 135 4 4 chr3 61856071 61856337 -156180821 + AluSg SINE Alu 1 266 -44 913 142 44 44 chr3 61857664 61857796 -156179362 + AluSx SINE Alu 2 136 -176 2176 101 0 10 chr3 61857796 61858103 -156179055 + AluSx SINE Alu 1 304 -8 913 142 44 44 chr3 61858103 61858153 -156179005 + AluSx SINE Alu 135 184 -128 337 284 126 48 chr3 61858310 61858488 -156178670 + L1M4 LINE L1 3820 3983 -2163 1986 114 3 58 chr3 61858488 61858813 -156178345 - AluSq SINE Alu -6 307 1 1435 212 0 3 chr3 61858813 61859105 -156178053 - AluJb SINE Alu -17 295 5 337 284 126 48 chr3 61859105 61859259 -156177899 + L1M4 LINE L1 3982 4179 -1967 366 246 97 29 chr3 61859400 61859575 -156177583 + MIR SINE MIR 32 218 -44 367 140 6 3 chr3 61859583 61859653 -156177505 - Alu SINE Alu -3 297 243 2142 103 10 3 chr3 61859673 61859983 -156177175 - AluSq SINE Alu -1 312 1 28 0 0 0 chr3 61860113 61860141 -156177017 + AT_rich Low_complexity Low_complexity 1 28 0 1916 125 7 13 chr3 61860622 61860925 -156176233 + AluSx SINE Alu 1 301 -11 1578 201 10 0 chr3 61860979 61861287 -156175871 + AluJo SINE Alu 1 311 -1 374 299 153 13 chr3 61861666 61861823 -156175335 - L1MC4a LINE L1 -1864 5944 5766 40 83 0 0 chr3 61862681 61862777 -156174381 + GC_rich Low_complexity Low_complexity 1 96 0 268 322 8 8 chr3 61862875 61862993 -156174165 + (CCG)n Simple_repeat Simple_repeat 3 120 0 1071 194 84 4 chr3 61864762 61864999 -156172159 - AluJb SINE Alu -56 256 1 1139 84 24 12 chr3 61865336 61865502 -156171656 - L1PA13 LINE L1 -1 6162 5995 1641 126 28 0 chr3 61866794 61867048 -156170110 + AluSq SINE Alu 39 299 -14 2323 73 0 3 chr3 61867347 61867648 -156169510 - AluY SINE Alu -11 300 1 183 147 29 0 chr3 61867939 61867973 -156169185 + MIR SINE MIR 18 52 -210 2153 77 20 0 chr3 61868788 61869085 -156168073 - AluSp SINE Alu -10 303 1 250 338 0 14 chr3 61869209 61869280 -156167878 - L2 LINE L2 -223 3049 2980 898 133 12 73 chr3 61869280 61869445 -156167713 - AluSq SINE Alu -158 155 1 1637 73 202 4 chr3 61869455 61869702 -156167456 - AluSx SINE Alu -6 296 1 213 267 144 11 chr3 61873842 61873932 -156163226 + MIR3 SINE MIR 97 198 -10 231 267 80 0 chr3 61875225 61875300 -156161858 + L1ME LINE L1 5519 5599 -522 256 230 135 0 chr3 61875370 61875444 -156161714 - MER112 DNA MER1_type 0 260 177 2143 117 3 0 chr3 61875484 61875784 -156161374 + AluSq SINE Alu 1 301 -12 331 250 200 0 chr3 61875896 61875996 -156161162 - L2 LINE L2 -28 3285 3166 228 222 56 28 chr3 61875996 61876068 -156161090 - MER112 DNA MER1_type -186 74 1 328 243 165 10 chr3 61876263 61876366 -156160792 - L2 LINE L2 -2 3311 3193 2104 71 4 0 chr3 61876374 61876640 -156160518 - AluSg SINE Alu -16 294 28 522 134 12 0 chr3 61876640 61876722 -156160436 - AluY SINE Alu -227 84 2 1875 109 0 14 chr3 61877886 61878161 -156158997 + AluSg1 SINE Alu 21 291 -18 2224 106 0 0 chr3 61878448 61878751 -156158407 - AluSg SINE Alu -7 303 1 23 0 0 0 chr3 61878918 61878941 -156158217 + AT_rich Low_complexity Low_complexity 1 23 0 717 123 19 0 chr3 61879123 61879229 -156157929 - FLAM_A SINE Alu -15 127 20 1678 171 9 22 chr3 61879344 61879660 -156157498 + AluJb SINE Alu 1 312 0 560 187 8 82 chr3 61879670 61879804 -156157354 + FLAM_A SINE Alu 1 124 -9 2000 123 30 0 chr3 61879861 61880162 -156156996 - AluSx SINE Alu -2 310 1 2220 93 0 3 chr3 61880231 61880532 -156156626 + AluSg SINE Alu 5 304 -6 630 181 17 3 chr3 61881074 61881189 -156155969 + MER2 DNA MER2_type 1 126 -113 255 245 19 0 chr3 61881192 61881245 -156155913 + MER2 DNA MER2_type 282 335 -10 2329 88 0 0 chr3 61881261 61881568 -156155590 + AluSx SINE Alu 1 307 -5 330 309 125 45 chr3 61881793 61882081 -156155077 + L2 LINE L2 2962 3272 0 180 0 0 0 chr3 61884243 61884263 -156152895 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1800 120 51 0 chr3 61884265 61884540 -156152618 - AluSq SINE Alu -24 289 1 563 155 0 0 chr3 61885336 61885420 -156151738 + AluJ/FLAM SINE Alu 2 85 -227 448 259 71 9 chr3 61885447 61885559 -156151599 + L2 LINE L2 3189 3307 -6 489 143 347 0 chr3 61885562 61885709 -156151449 - MER3 DNA MER1_type 0 209 12 2023 104 20 3 chr3 61885988 61886285 -156150873 + AluSq SINE Alu 1 302 -11 1797 154 24 3 chr3 61886509 61886807 -156150351 + AluJo SINE Alu 1 304 -8 504 259 26 17 chr3 61887049 61887165 -156149993 + L2 LINE L2 3149 3265 -7 2246 71 0 10 chr3 61887166 61887463 -156149695 + AluY SINE Alu 2 295 -16 1814 160 0 3 chr3 61887562 61887855 -156149303 + AluJb SINE Alu 1 292 -20 22 0 0 0 chr3 61888389 61888411 -156148747 + AT_rich Low_complexity Low_complexity 1 22 0 241 310 59 38 chr3 61888991 61889230 -156147928 + L1M4 LINE L1 5051 5294 -852 4437 114 44 81 chr3 61889356 61890171 -156146987 - LTR1 LTR ERV1 0 785 1 726 214 46 12 chr3 61890246 61890419 -156146739 + L1MC4 LINE L1 7364 7542 -500 896 71 8 16 chr3 61890421 61890548 -156146610 + LTR43 LTR ERV1 397 522 -80 299 200 108 69 chr3 61890552 61890596 -156146562 + L1MC4 LINE L1 7535 7576 -466 2390 70 3 0 chr3 61890596 61890898 -156146260 + AluSp SINE Alu 1 303 -10 299 200 108 69 chr3 61890898 61890983 -156146175 + L1MC4 LINE L1 7576 7669 -373 1625 171 28 3 chr3 61891035 61891321 -156145837 + AluJb SINE Alu 1 293 -19 413 40 0 0 chr3 61891362 61891412 -156145746 + LTR54 LTR ERV1 3 52 -458 5655 200 98 59 chr3 61891413 61892471 -156144687 + MER52A LTR ERV1 1 1151 -604 2136 103 0 13 chr3 61892471 61892771 -156144387 - AluSg SINE Alu -14 296 1 5655 200 98 59 chr3 61892771 61893401 -156143757 + MER52A LTR ERV1 1151 1755 0 1646 162 97 81 chr3 61893401 61893855 -156143303 + LTR54 LTR ERV1 50 510 0 2163 271 49 58 chr3 61893855 61894207 -156142951 + L1M4b LINE L1 143 497 -6362 2098 117 3 3 chr3 61894207 61894507 -156142651 + AluSx SINE Alu 1 300 -12 2163 271 49 58 chr3 61894507 61894837 -156142321 + L1M4b LINE L1 497 829 -6030 2497 125 147 75 chr3 61894837 61894865 -156142293 + LTR36 LTR ERV1 1 26 -585 2059 104 0 14 chr3 61894865 61895176 -156141982 - AluSx SINE Alu 0 307 1 2497 125 147 75 chr3 61895176 61895271 -156141887 + LTR36 LTR ERV1 26 113 -498 2300 85 0 7 chr3 61895271 61895578 -156141580 + AluSx SINE Alu 1 305 -7 2497 125 147 75 chr3 61895578 61895844 -156141314 + LTR36 LTR ERV1 113 358 -253 2042 102 3 14 chr3 61895844 61896138 -156141020 - AluSp SINE Alu -22 291 1 2497 125 147 75 chr3 61896138 61896314 -156140844 + LTR36 LTR ERV1 358 611 0 2163 271 49 58 chr3 61896314 61896453 -156140705 + L1M4b LINE L1 829 957 -5902 * 2261 253 38 33 chr3 61896431 61896456 -156140702 + L1M4b LINE L1 1459 1482 -5475 1704 99 4 0 chr3 61896456 61896689 -156140469 + AluSg/x SINE Alu 74 307 -5 2261 253 38 33 chr3 61896689 61897084 -156140074 + L1M4b LINE L1 1482 1874 -5083 1384 148 24 136 chr3 61897084 61897423 -156139735 + AluYb8 SINE Alu 3 303 -5 2261 253 38 33 chr3 61897423 61897975 -156139183 + L1M4b LINE L1 1874 2490 -4467 * 2493 199 66 73 chr3 61897974 61898529 -156138629 + L1M4 LINE L1 5 556 -5828 1732 161 0 26 chr3 61898529 61898834 -156138324 + AluJo SINE Alu 3 299 -13 2493 199 66 73 chr3 61898834 61898947 -156138211 + L1M4 LINE L1 556 668 -5716 1464 219 158 52 chr3 61898947 61899521 -156137637 + LTR27 LTR ERV1 2 636 0 7010 162 79 71 chr3 61899543 61899702 -156137456 + L1M4 LINE L1 759 915 -5467 1502 182 31 7 chr3 61899702 61899988 -156137170 + AluJb SINE Alu 1 293 -19 7010 162 79 71 chr3 61899988 61900003 -156137155 + L1M4 LINE L1 915 928 -5454 1610 180 28 3 chr3 61900003 61900292 -156136866 + AluJo SINE Alu 1 296 -16 7010 162 79 71 chr3 61900292 61900349 -156136809 + L1M4 LINE L1 928 983 -5399 1646 146 66 0 chr3 61900349 61900623 -156136535 - AluSx SINE Alu -20 292 1 7010 162 79 71 chr3 61900623 61901032 -156136126 + L1M4 LINE L1 983 1387 -4995 1651 167 11 0 chr3 61901032 61901314 -156135844 + AluSx SINE Alu 1 285 -27 279 0 0 0 chr3 61901314 61901345 -156135813 + (CA)n Simple_repeat Simple_repeat 2 32 0 7010 162 79 71 chr3 61901345 61901697 -156135461 + L1M4 LINE L1 1387 1735 -4647 1989 141 17 6 chr3 61901697 61902044 -156135114 + L1MA7 LINE L1 5941 6291 0 7010 162 79 71 chr3 61902044 61902311 -156134847 + L1M4 LINE L1 1735 1998 -4384 2298 49 0 14 chr3 61902311 61902622 -156134536 + AluY SINE Alu 1 307 0 7010 162 79 71 chr3 61902622 61903398 -156133760 + L1M4 LINE L1 1998 2766 -3616 2289 84 0 3 chr3 61903398 61903697 -156133461 + AluY SINE Alu 1 298 -13 2114 93 3 0 chr3 61903707 61903996 -156133162 + AluSg1 SINE Alu 1 290 -19 7010 162 79 71 chr3 61903996 61904050 -156133108 + L1M4 LINE L1 2774 2826 -3556 2183 118 3 0 chr3 61904050 61904356 -156132802 - AluSp SINE Alu -6 307 1 7010 162 79 71 chr3 61904356 61904575 -156132583 + L1M4 LINE L1 2826 3042 -3340 1631 151 58 0 chr3 61904575 61904853 -156132305 - AluSq SINE Alu -19 294 1 7010 162 79 71 chr3 61904853 61905031 -156132127 + L1M4 LINE L1 3042 3281 -3101 676 201 0 22 chr3 61905033 61905167 -156131991 + FLAM_C SINE Alu 1 131 -2 1324 194 0 12 chr3 61905174 61905426 -156131732 + AluJb SINE Alu 2 250 -62 5261 53 12 2 chr3 61905426 61906447 -156130711 + MER11A LTR ERVK 2 1266 0 300 143 0 63 chr3 61906447 61906509 -156130649 + AluJb SINE Alu 244 301 -1 2106 104 3 7 chr3 61906509 61906806 -156130352 + AluSx SINE Alu 1 296 -16 1818 241 14 25 chr3 61906816 61906915 -156130243 + L1M4 LINE L1 3478 3577 -2805 2029 133 3 0 chr3 61906915 61907189 -156129969 + AluSc SINE Alu 5 303 -6 22 0 0 0 chr3 61907189 61907211 -156129947 + AT_rich Low_complexity Low_complexity 1 22 0 1818 241 14 25 chr3 61907217 61907628 -156129530 + L1M4 LINE L1 3577 3982 -2400 722 261 40 9 chr3 61907640 61907866 -156129292 - L1M4 LINE L1 -2409 3737 3505 1188 206 22 14 chr3 61907873 61908150 -156129008 + L1MB4 LINE L1 5902 6180 0 251 292 23 31 chr3 61908247 61908377 -156128781 + L1MEc LINE L1 1736 1864 -4532 * 1646 188 81 8 chr3 61908376 61908733 -156128425 + L1M4 LINE L1 4851 5233 -1149 623 159 0 26 chr3 61908792 61908867 -156128291 - FLAM_C SINE Alu -201 111 38 2599 108 6 3 chr3 61908867 61909227 -156127931 + THE1B LTR MaLR 4 364 0 623 159 0 26 chr3 61909227 61909264 -156127894 - FLAM_C SINE Alu -274 38 2 2336 83 3 7 chr3 61909276 61909577 -156127581 - AluY SINE Alu -11 300 1 27 0 0 0 chr3 61911121 61911148 -156126010 + AT_rich Low_complexity Low_complexity 1 27 0 573 155 0 0 chr3 61911161 61911245 -156125913 + AluY SINE Alu 2 85 -233 2278 83 0 26 chr3 61911247 61911549 -156125609 + AluSg SINE Alu 1 294 -16 1704 90 27 0 chr3 61911551 61911774 -156125384 + AluSg/x SINE Alu 79 307 -5 2489 76 0 0 chr3 61913387 61913690 -156123468 + AluY SINE Alu 1 303 -8 2068 121 0 24 chr3 61914025 61914322 -156122836 - AluSx SINE Alu -18 294 5 291 221 52 13 chr3 61914364 61914441 -156122717 + L1M4 LINE L1 5240 5319 -1063 855 161 35 17 chr3 61914450 61914624 -156122534 + L1MB8 LINE L1 6002 6178 0 2271 92 0 0 chr3 61914884 61915195 -156121963 - AluY SINE Alu 0 311 1 1477 201 28 10 chr3 61915197 61915486 -156121672 - AluJo SINE Alu -18 294 1 187 54 54 27 chr3 61915504 61915541 -156121617 + T-rich Low_complexity Low_complexity 5 42 0 1906 148 32 0 chr3 61915545 61915823 -156121335 - AluJb SINE Alu -24 288 2 24 0 0 0 chr3 61916003 61916027 -156121131 + AT_rich Low_complexity Low_complexity 1 24 0 2233 109 3 0 chr3 61916200 61916493 -156120665 + AluSx SINE Alu 1 294 -18 1905 210 50 38 chr3 61916824 61917598 -156119560 + L1ME LINE L1 27 1041 -5220 2024 123 27 7 chr3 61917598 61917898 -156119260 + AluSx SINE Alu 1 306 -6 1905 210 50 38 chr3 61917898 61918033 -156119125 + L1ME LINE L1 1041 1173 -5088 2484 65 0 10 chr3 61918035 61918344 -156118814 + AluY SINE Alu 1 306 -5 2333 97 3 6 chr3 61918849 61919160 -156117998 - AluSg SINE Alu 0 310 1 726 194 0 8 chr3 61919318 61919452 -156117706 - FLAM_A SINE Alu 0 133 1 1726 184 18 0 chr3 61919856 61920167 -156116991 - AluJo SINE Alu 0 316 1 669 282 42 9 chr3 61920675 61920888 -156116270 + MIR SINE MIR 31 250 -12 2453 89 0 0 chr3 61921486 61921788 -156115370 + AluSg SINE Alu 1 302 -8 2396 70 0 13 chr3 61922003 61922301 -156114857 - AluY SINE Alu -17 294 1 2251 106 7 0 chr3 61922381 61922674 -156114484 + AluSx SINE Alu 1 295 -17 1651 209 0 0 chr3 61922820 61923103 -156114055 - AluJb SINE Alu -27 285 3 2370 100 3 3 chr3 61924257 61924567 -156112591 + AluSg SINE Alu 1 310 0 1357 220 17 10 chr3 61924745 61925036 -156112122 + AluJb SINE Alu 1 293 -19 2457 52 0 33 chr3 61925042 61925349 -156111809 - AluY SINE Alu -14 297 1 23 0 0 0 chr3 61925349 61925372 -156111786 + AT_rich Low_complexity Low_complexity 1 23 0 278 341 23 0 chr3 61925740 61925872 -156111286 + MIR SINE MIR 102 236 -26 1689 156 3 21 chr3 61925882 61926165 -156110993 + AluJb SINE Alu 1 278 -34 2318 108 0 0 chr3 61926208 61926513 -156110645 - AluSx SINE Alu -5 307 3 2135 180 51 111 chr3 61926515 61926634 -156110524 + L1MD1 LINE L1 5216 5341 -901 2310 105 0 10 chr3 61926634 61926940 -156110218 + AluSx SINE Alu 1 303 -9 2135 180 51 111 chr3 61926940 61927348 -156109810 + L1MD1 LINE L1 5341 5772 -470 2003 138 24 0 chr3 61927348 61927637 -156109521 + AluSx SINE Alu 1 296 -16 2135 180 51 111 chr3 61927637 61927728 -156109430 + L1MD1 LINE L1 5772 5867 -375 1514 142 51 54 chr3 61927728 61928023 -156109135 + AluJo SINE Alu 1 294 -18 2135 180 51 111 chr3 61928023 61928111 -156109047 + L1MD1 LINE L1 5867 5959 -283 2249 103 0 41 chr3 61928111 61928256 -156108902 + AluSp SINE Alu 1 150 -163 2478 74 0 3 chr3 61928256 61928554 -156108604 + AluY SINE Alu 1 297 -14 2249 103 0 41 chr3 61928554 61928728 -156108430 + AluSp SINE Alu 150 307 -6 2135 180 51 111 chr3 61928728 61928890 -156108268 + L1MD1 LINE L1 5959 6070 -172 1679 133 13 51 chr3 61929495 61929701 -156107457 + L1MB4 LINE L1 5585 5797 -383 2090 147 0 0 chr3 61929701 61930001 -156107157 + AluSq SINE Alu 2 301 -12 1679 133 13 51 chr3 61930001 61930016 -156107142 + L1MB4 LINE L1 5797 5811 -369 189 0 0 0 chr3 61930016 61930037 -156107121 + (CA)n Simple_repeat Simple_repeat 2 22 0 1679 133 13 51 chr3 61930037 61930129 -156107029 + L1MB4 LINE L1 5811 5887 -293 1655 133 107 11 chr3 61930129 61930399 -156106759 + AluJb SINE Alu 1 296 -16 2004 106 25 3 chr3 61930970 61931254 -156105904 + AluSg SINE Alu 1 290 -20 2487 71 0 3 chr3 61931874 61932183 -156104975 + AluY SINE Alu 1 308 -3 1132 203 24 32 chr3 61932218 61932469 -156104689 + L1MB4 LINE L1 5877 6125 -55 6380 184 18 51 chr3 61932481 61934358 -156102800 + L1MB3 LINE L1 3857 5793 -390 2379 107 7 0 chr3 61934358 61934666 -156102492 + AluSx SINE Alu 1 310 -2 6380 184 18 51 chr3 61934666 61934976 -156102182 + L1MB3 LINE L1 5793 5952 -231 2318 118 0 10 chr3 61934976 61935290 -156101868 + AluSx SINE Alu 1 311 -1 6380 184 18 51 chr3 61935290 61935514 -156101644 + L1MB3 LINE L1 5952 6182 -1 4499 155 43 71 chr3 61935509 61935902 -156101256 + L1MB5 LINE L1 4980 5382 -792 * 1579 169 50 13 chr3 61935902 61936203 -156100955 + AluJo SINE Alu 1 312 0 1859 145 20 14 chr3 61936205 61936501 -156100657 + AluJb SINE Alu 3 300 -12 4499 155 43 71 chr3 61936501 61937282 -156099876 + L1MB5 LINE L1 5383 6114 -60 2123 124 0 0 chr3 61937282 61937599 -156099559 - AluSx SINE Alu 0 317 1 4499 155 43 71 chr3 61937599 61937650 -156099508 + L1MB5 LINE L1 6114 6165 -9 1446 191 70 48 chr3 61938151 61938354 -156098804 + L1MD3 LINE L1 7610 7826 -169 2231 96 0 41 chr3 61938354 61938668 -156098490 - AluSx SINE Alu -11 301 1 1446 191 70 48 chr3 61938668 61938835 -156098323 + L1MD3 LINE L1 7826 7988 -7 316 125 21 0 chr3 61939467 61939515 -156097643 - MER66B LTR ERV1 -142 344 296 2155 167 99 68 chr3 61939641 61939719 -156097439 + MER34 LTR ERV1 12 86 -456 2116 83 0 0 chr3 61939719 61939985 -156097173 + AluSg SINE Alu 37 302 -8 2155 167 99 68 chr3 61939985 61940421 -156096737 + MER34 LTR ERV1 86 542 0 421 238 84 94 chr3 61940881 61941085 -156096073 + L1MC4a LINE L1 5592 5797 -324 2400 93 3 6 chr3 61941085 61941396 -156095762 + AluSx SINE Alu 1 310 -2 421 238 84 94 chr3 61941396 61941432 -156095726 + L1MC4a LINE L1 5797 5733 -388 2370 88 0 0 chr3 61941432 61941726 -156095432 + AluY SINE Alu 1 294 -17 421 238 84 94 chr3 61941726 61941783 -156095375 + L1MC4a LINE L1 5732 5788 -333 354 45 0 0 chr3 61941845 61941889 -156095269 + (CA)n Simple_repeat Simple_repeat 1 44 0 2284 120 0 0 chr3 61942151 61942459 -156094699 + AluSq SINE Alu 1 308 -5 2832 13 0 0 chr3 61943787 61944089 -156093069 + AluYb8 SINE Alu 1 302 -16 1810 130 8 8 chr3 61944115 61944376 -156092782 + AluSx SINE Alu 32 292 -20 2493 82 0 19 chr3 61944512 61944827 -156092331 + AluSq SINE Alu 1 309 -4 287 221 15 0 chr3 61944935 61945003 -156092155 + LTR54 LTR ERV1 394 462 -48 2166 122 3 10 chr3 61946020 61946331 -156090827 + AluSx SINE Alu 1 309 -3 470 181 164 9 chr3 61946763 61946879 -156090279 - MER94 DNA DNA 0 134 1 600 288 143 26 chr3 61946900 61947286 -156089872 - L2 LINE L2 -535 2779 2349 255 121 494 0 chr3 61948264 61948347 -156088811 - L2 LINE L2 -1 3312 3189 828 190 20 55 chr3 61948491 61948691 -156088467 + MER67B LTR ERV1 1 193 -468 1440 168 82 10 chr3 61948714 61949005 -156088153 - AluJo SINE Alu 0 312 1 1942 132 12 21 chr3 61949005 61949331 -156087827 - L1MB3 LINE L1 -358 5825 5503 256 218 115 0 chr3 61949334 61949412 -156087746 + L1ME2 LINE L1 6048 6134 -30 2551 159 18 14 chr3 61949487 61949926 -156087232 - MER67B LTR ERV1 0 661 221 1610 158 61 7 chr3 61949928 61950207 -156086951 + AluJb SINE Alu 1 294 -18 2162 123 31 0 chr3 61950210 61950569 -156086589 + L1MB3 LINE L1 5812 6181 -2 1089 113 0 0 chr3 61950581 61950732 -156086426 + AluSg/x SINE Alu 154 304 -8 358 252 137 0 chr3 61950736 61950867 -156086291 - L2 LINE L2 -2 3270 3122 186 184 26 0 chr3 61950984 61951022 -156086136 - L2 LINE L2 -309 2963 2925 242 250 31 94 chr3 61951828 61951956 -156085202 + MIR SINE MIR 123 242 -20 232 209 23 0 chr3 61953376 61953419 -156083739 + AluJb SINE Alu 72 115 -18 295 68 102 0 chr3 61953425 61953484 -156083674 + T-rich Low_complexity Low_complexity 5 69 0 2023 149 7 0 chr3 61953491 61953799 -156083359 - AluSx SINE Alu -2 310 1 1189 169 5 5 chr3 61953799 61954000 -156083158 + AluJb SINE Alu 104 304 -8 2169 90 28 3 chr3 61954016 61954304 -156082854 + AluSq SINE Alu 1 295 -18 262 149 43 0 chr3 61954560 61954607 -156082551 + HSMAR1 DNA Mariner 1 49 -1238 198 295 0 0 chr3 61957059 61957120 -156080038 - L2 LINE L2 -5 3308 3248 684 143 0 50 chr3 61957211 61957330 -156079828 + FLAM_A SINE Alu 11 123 -19 198 373 13 0 chr3 61957687 61957762 -156079396 + MIR SINE MIR 56 131 -77 230 157 0 20 chr3 61958229 61958280 -156078878 + CT-rich Low_complexity Low_complexity 2 51 0 1236 56 11 6 chr3 61958282 61958461 -156078697 + (TTC)n Simple_repeat Simple_repeat 1 180 0 302 343 51 51 chr3 61958751 61958926 -156078232 - L1ME4a LINE L1 0 6121 5947 198 305 102 59 chr3 61959491 61959609 -156077549 + MIR SINE MIR 51 173 -89 370 303 0 0 chr3 61960435 61960524 -156076634 + L3 LINE CR1 1413 1501 -76 649 314 94 23 chr3 61960703 61961002 -156076156 - L2 LINE L2 -9 3263 2944 2107 111 28 0 chr3 61961685 61961974 -156075184 + AluSg SINE Alu 1 297 -13 258 254 30 0 chr3 61961976 61962043 -156075115 + MIR SINE MIR 79 147 -115 286 254 0 15 chr3 61962621 61962688 -156074470 - L2 LINE L2 -6 3266 3201 451 350 112 0 chr3 61962777 61962991 -156074167 + MIR SINE MIR 16 253 -9 223 314 165 0 chr3 61963108 61963229 -156073929 + L2 LINE L2 3173 3313 0 198 286 0 0 chr3 61963727 61963783 -156073375 - MIR SINE MIR -133 129 74 209 269 0 0 chr3 61963882 61963934 -156073224 + L2 LINE L2 3262 3313 0 234 174 0 0 chr3 61963934 61963980 -156073178 + (TGAA)n Simple_repeat Simple_repeat 2 47 0 456 228 102 0 chr3 61965599 61965645 -156071513 + MER45A DNA AcHobo 1 41 -1540 2289 97 0 0 chr3 61965645 61965943 -156071215 - AluSx SINE Alu -14 298 1 456 228 102 0 chr3 61965943 61966048 -156071110 + MER45A DNA AcHobo 41 178 0 201 245 0 19 chr3 61966120 61966173 -156070985 + CT-rich Low_complexity Low_complexity 2 53 0 240 35 0 0 chr3 61967346 61967375 -156069783 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 658 248 188 6 chr3 61967462 61967661 -156069497 + MIR SINE MIR 7 242 -20 273 303 17 57 chr3 61969748 61969923 -156067235 + MIR3 SINE MIR 41 208 0 1003 163 0 17 chr3 61970380 61970552 -156066606 - FRAM SINE Alu -13 163 1 197 310 71 64 chr3 61971020 61971301 -156065857 - L2 LINE L2 -41 3231 2949 333 301 17 61 chr3 61972071 61972300 -156064858 + MIR3 SINE MIR 3 214 -48 276 223 100 62 chr3 61972374 61972504 -156064654 + MIR3 SINE MIR 3 137 -71 225 186 0 23 chr3 61975573 61975616 -156061542 + CT-rich Low_complexity Low_complexity 3 44 0 429 335 43 32 chr3 61978233 61978418 -156058740 - L3 LINE CR1 -110 1467 1281 341 214 56 0 chr3 61978422 61978511 -156058647 - MER53 DNA DNA 0 189 96 * 405 195 23 0 chr3 61978435 61978522 -156058636 + MER53 DNA DNA 24 112 -77 1033 155 95 101 chr3 61978522 61978839 -156058319 - MLT1B LTR MaLR 0 390 76 418 184 11 0 chr3 61978878 61978965 -156058193 - MER53 DNA DNA -98 91 4 387 0 0 0 chr3 61980349 61980392 -156056766 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2449 72 0 0 chr3 61980394 61980701 -156056457 - AluSx SINE Alu -5 307 1 204 262 107 58 chr3 61981354 61981457 -156055701 + L3b LINE CR1 1325 1432 -151 555 248 40 76 chr3 61982070 61982268 -156054890 - MIR SINE MIR -49 213 23 212 353 0 0 chr3 61982449 61982517 -156054641 + (TG)n Simple_repeat Simple_repeat 2 69 0 403 236 19 9 chr3 61984513 61984619 -156052539 - MIR SINE MIR -83 125 19 663 203 12 3 chr3 61986262 61986601 -156050557 + (TCCA)n Simple_repeat Simple_repeat 1 342 0 180 298 243 33 chr3 61986837 61987142 -156050016 + L2 LINE L2 2595 2963 -351 1820 162 3 13 chr3 61987646 61987954 -156049204 - AluJb SINE Alu -7 305 1 534 332 147 21 chr3 61988313 61988687 -156048471 + L2 LINE L2 2851 3271 -1 1949 155 3 0 chr3 61989389 61989686 -156047472 - AluJb SINE Alu -14 298 1 180 0 0 0 chr3 61990053 61990073 -156047085 + (T)n Simple_repeat Simple_repeat 1 20 0 277 299 0 0 chr3 61990191 61990258 -156046900 + MIR3 SINE MIR 120 186 -22 255 329 40 40 chr3 61991524 61991657 -156045501 + MIR3 SINE MIR 49 184 -24 1787 162 10 29 chr3 61991657 61991966 -156045192 - AluSx SINE Alu -9 303 1 255 329 40 40 chr3 61991966 61991984 -156045174 + MIR3 SINE MIR 183 200 -8 2440 81 7 0 chr3 61992314 61992624 -156044534 - AluSx SINE Alu 0 312 1 1999 141 24 0 chr3 61992769 61993067 -156044091 - AluSx SINE Alu -6 306 2 336 302 42 19 chr3 61993599 61993751 -156043407 - MIR SINE MIR -69 139 41 204 122 0 0 chr3 61997413 61997454 -156039704 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 231 282 191 0 chr3 61998558 61998689 -156038469 - MIR3 SINE MIR -24 184 29 2299 90 0 0 chr3 61999144 61999443 -156037715 + AluY SINE Alu 1 299 -12 523 289 13 6 chr3 61999629 61999785 -156037373 - MIR SINE MIR -82 180 24 417 288 92 80 chr3 61999854 62000180 -156036978 + L2 LINE L2 2934 3263 -9 210 331 103 22 chr3 62000194 62000330 -156036828 + MIR SINE MIR 1 147 -61 1391 146 42 25 chr3 62002402 62002641 -156034517 + AluJb SINE Alu 1 243 -69 221 217 0 0 chr3 62003270 62003316 -156033842 + L3 LINE CR1 1423 1468 -109 184 350 71 50 chr3 62004415 62004555 -156032603 - MIR SINE MIR -12 250 108 211 327 88 0 chr3 62005794 62005907 -156031251 - L3 LINE CR1 -149 1428 1306 235 348 14 0 chr3 62007159 62007228 -156029930 - MIR SINE MIR -18 244 175 596 279 25 17 chr3 62007228 62007417 -156029741 - MIR SINE MIR -37 225 38 222 299 195 0 chr3 62007407 62007494 -156029664 + MIR SINE MIR 124 227 -35 * 334 228 76 51 chr3 62108321 62108479 -155928679 + L2 LINE L2 3067 3228 -85 212 293 0 17 chr3 62108540 62108598 -155928560 - MIR SINE MIR -113 95 39 1790 175 0 10 chr3 62108630 62108939 -155928219 + AluJb SINE Alu 7 312 0 272 67 0 0 chr3 62108884 62108958 -155928200 + Alu SINE Alu 258 331 0 711 177 31 0 chr3 62109259 62109389 -155927769 - MLT1A2 LTR MaLR 0 374 241 48 60 0 0 chr3 62109643 62109726 -155927432 + GC_rich Low_complexity Low_complexity 1 83 0 245 182 13 39 chr3 62109728 62109805 -155927353 + C-rich Low_complexity Low_complexity 4 78 0 31 44 0 0 chr3 62109860 62109905 -155927253 + GC_rich Low_complexity Low_complexity 1 45 0 216 299 15 15 chr3 62109948 62110082 -155927076 + (CTCG)n Simple_repeat Simple_repeat 2 135 0 2461 84 0 0 chr3 62110795 62111091 -155926067 - AluY SINE Alu -15 296 1 2322 92 0 3 chr3 62111095 62111388 -155925770 - AluSc SINE Alu -17 292 1 2288 184 100 40 chr3 62112462 62112653 -155924505 + L1ME1 LINE L1 5400 5578 -588 2503 77 0 0 chr3 62112653 62112964 -155924194 + AluY SINE Alu 1 311 0 2288 184 100 40 chr3 62112964 62113149 -155924009 + L1ME1 LINE L1 5578 5750 -416 2187 75 4 0 chr3 62113149 62113417 -155923741 + AluY SINE Alu 29 297 -14 2288 184 100 40 chr3 62113417 62113707 -155923451 + L1ME1 LINE L1 5750 6107 -59 2493 61 0 3 chr3 62114223 62114519 -155922639 - AluY SINE Alu -16 295 1 1010 183 6 0 chr3 62114519 62114683 -155922475 - FRAM SINE Alu -15 161 1 327 287 177 22 chr3 62114926 62115107 -155922051 + L1M4 LINE L1 5189 5397 -749 336 380 48 0 chr3 62116974 62117140 -155920018 + MIR3 SINE MIR 28 201 -7 640 173 100 57 chr3 62117289 62117509 -155919649 - L1ME3 LINE L1 0 6170 5940 1851 143 10 14 chr3 62118764 62119057 -155918101 + AluJo SINE Alu 1 292 -20 251 277 69 39 chr3 62120822 62120952 -155916206 - MIR SINE MIR -85 177 44 214 266 138 11 chr3 62122763 62122857 -155914301 + MIR SINE MIR 34 139 -69 188 214 36 83 chr3 62122921 62123005 -155914153 + MIR SINE MIR 101 180 -82 586 249 52 29 chr3 62123940 62124113 -155913045 + MIR SINE MIR 80 256 -6 332 260 13 59 chr3 62124111 62124233 -155912925 + MIR3 SINE MIR 67 184 -24 * 570 270 123 7 chr3 62124340 62124573 -155912585 + MIR SINE MIR 6 262 0 276 345 35 0 chr3 62124573 62124689 -155912469 + MIR SINE MIR 140 259 -3 268 319 219 19 chr3 62124831 62124991 -155912167 + MIR SINE MIR 16 205 -57 2071 138 7 0 chr3 62125020 62125309 -155911849 + AluJb SINE Alu 1 291 -21 21 36 0 0 chr3 62125530 62125558 -155911600 + AT_rich Low_complexity Low_complexity 1 28 0 222 329 26 0 chr3 62125686 62125762 -155911396 + MIR3 SINE MIR 110 187 -21 206 259 103 0 chr3 62125887 62125945 -155911213 + L2 LINE L2 3160 3223 -49 236 224 45 45 chr3 62126340 62126407 -155910751 + MIR3 SINE MIR 108 174 -34 2089 136 0 22 chr3 62126455 62126772 -155910386 - AluJo SINE Alu -2 310 1 213 364 45 0 chr3 62126836 62126924 -155910234 - L2 LINE L2 -47 3225 3134 1807 94 121 11 chr3 62127330 62127595 -155909563 + AluSg SINE Alu 1 294 -16 2010 109 34 17 chr3 62127616 62127909 -155909249 + AluSg SINE Alu 1 298 -12 1992 142 10 19 chr3 62127947 62128258 -155908900 + AluSx SINE Alu 1 308 -4 207 259 0 0 chr3 62128631 62128689 -155908469 + C-rich Low_complexity Low_complexity 1 58 0 408 144 40 17 chr3 62128690 62128864 -155908294 + (CCCCG)n Simple_repeat Simple_repeat 3 180 0 234 152 27 45 chr3 62128843 62128955 -155908203 + C-rich Low_complexity Low_complexity 5 114 0 * 206 104 33 77 chr3 62128958 62129140 -155908018 + (CCG)n Simple_repeat Simple_repeat 1 174 0 1976 128 7 7 chr3 62129333 62129622 -155907536 - AluSx SINE Alu -23 289 1 291 172 23 35 chr3 62129631 62129718 -155907440 - L1ME2 LINE L1 -154 6010 5925 2106 145 3 0 chr3 62129722 62130086 -155907072 + AluJo SINE Alu 1 365 0 1691 158 29 0 chr3 62130170 62130369 -155906789 - AluSx SINE Alu 0 312 119 387 0 0 0 chr3 62130369 62130412 -155906746 + (TG)n Simple_repeat Simple_repeat 2 44 0 1691 158 29 0 chr3 62130412 62130522 -155906636 - AluSx SINE Alu -193 119 14 1343 201 102 0 chr3 62130538 62130802 -155906356 - AluJo SINE Alu -20 292 2 235 143 61 0 chr3 62130810 62130859 -155906299 - L1ME2 LINE L1 -303 5863 5812 2373 101 0 22 chr3 62130881 62131199 -155905959 - AluSx SINE Alu -1 311 1 246 221 92 31 chr3 62131336 62131531 -155905627 - Charlie7 DNA MER1_type -53 2559 2353 25 83 0 0 chr3 62131537 62131597 -155905561 + AT_rich Low_complexity Low_complexity 1 60 0 579 100 0 0 chr3 62132135 62132215 -155904943 + MADE1 DNA Mariner 1 80 0 2373 110 3 0 chr3 62132308 62132618 -155904540 - AluSx SINE Alu -1 311 1 1273 70 0 19 chr3 62132995 62133152 -155904006 + AluY SINE Alu 1 154 -157 2010 104 0 0 chr3 62133252 62133511 -155903647 - AluSq SINE Alu -52 261 3 701 136 0 19 chr3 62133748 62133851 -155903307 - FLAM_C SINE Alu -16 127 27 183 80 0 0 chr3 62133851 62133876 -155903282 + (T)n Simple_repeat Simple_repeat 1 25 0 1707 81 0 9 chr3 62133888 62134109 -155903049 - AluY SINE Alu -92 219 1 258 179 0 0 chr3 62134109 62134148 -155903010 - Alu SINE Alu -261 39 1 219 185 185 15 chr3 62134155 62134220 -155902938 - MIR SINE MIR -70 192 117 1070 85 0 0 chr3 62134264 62134394 -155902764 - AluSq/x SINE Alu -183 130 1 187 244 115 39 chr3 62136362 62136440 -155900718 - L2 LINE L2 -3109 205 122 * 277 311 97 10 chr3 62136402 62136505 -155900653 - MER5A DNA MER1_type -71 118 7 203 125 25 0 chr3 62136511 62136551 -155900607 + CT-rich Low_complexity Low_complexity 2 42 0 1932 154 7 3 chr3 62136672 62136965 -155900193 - AluJo SINE Alu -16 296 3 1076 154 134 8 chr3 62137230 62137498 -155899660 - MER33 DNA MER1_type -36 288 1 451 296 30 53 chr3 62138832 62139001 -155898157 + MIR SINE MIR 27 191 -71 196 339 16 0 chr3 62139248 62139310 -155897848 + L2 LINE L2 3194 3256 -16 366 332 121 59 chr3 62139367 62139623 -155897535 + L2 LINE L2 2996 3267 -5 2198 144 0 0 chr3 62139940 62140246 -155896912 - AluJb SINE Alu -6 306 1 2389 95 3 7 chr3 62140248 62140553 -155896605 - AluSx SINE Alu -6 306 3 686 271 57 6 chr3 62140734 62140911 -155896247 + MIR SINE MIR 76 261 -1 258 299 0 0 chr3 62140965 62141032 -155896126 - MIR3 SINE MIR -32 176 110 499 244 17 8 chr3 62141402 62141521 -155895637 - MIR SINE MIR -32 230 111 660 210 0 19 chr3 62141634 62141796 -155895362 + AluJb SINE Alu 137 295 -17 204 349 136 0 chr3 62141844 62141976 -155895182 - L2 LINE L2 -449 2865 2716 524 285 98 73 chr3 62142071 62142345 -155894813 - L2 LINE L2 0 3272 2992 822 187 0 8 chr3 62142439 62142573 -155894585 + FLAM_C SINE Alu 1 133 0 21 57 0 0 chr3 62142710 62142745 -155894413 + AT_rich Low_complexity Low_complexity 1 35 0 1922 131 21 14 chr3 62142783 62143074 -155894084 + AluSx SINE Alu 4 296 -16 49 32 0 0 chr3 62143074 62143137 -155894021 + AT_rich Low_complexity Low_complexity 1 63 0 1459 164 38 48 chr3 62143140 62143432 -155893726 + AluSx SINE Alu 1 289 -23 1984 137 14 0 chr3 62144094 62144379 -155892779 - AluSx SINE Alu -23 289 1 253 287 43 35 chr3 62145031 62145146 -155892012 - L2 LINE L2 -936 2378 2263 26 0 0 0 chr3 62146006 62146032 -155891126 + AT_rich Low_complexity Low_complexity 1 26 0 1239 160 0 67 chr3 62146177 62146312 -155890846 + AluJo SINE Alu 1 117 -195 2115 108 24 7 chr3 62146312 62146600 -155890558 + AluSq SINE Alu 1 293 -20 1239 160 0 67 chr3 62146600 62146689 -155890469 + AluJo SINE Alu 117 210 -102 2248 119 22 14 chr3 62147769 62148131 -155889027 + L1MB3 LINE L1 5810 6174 -9 1105 144 0 24 chr3 62148141 62148299 -155888859 - AluSg/x SINE Alu -33 277 122 397 97 28 28 chr3 62148299 62148371 -155888787 - L1PA10 LINE L1 0 6168 6097 1617 161 25 62 chr3 62149286 62149608 -155887550 - AluJb SINE Alu -2 310 1 2292 110 0 13 chr3 62149906 62150215 -155886943 + AluSq SINE Alu 6 310 -3 1213 220 43 0 chr3 62150573 62150828 -155886330 - AluJb SINE Alu -46 266 1 417 20 0 0 chr3 62151243 62151293 -155885865 + (TTTTG)n Simple_repeat Simple_repeat 3 52 0 862 163 0 14 chr3 62151297 62151438 -155885720 - AluJb SINE Alu -33 279 141 327 255 14 14 chr3 62151607 62151715 -155885443 + MIR SINE MIR 41 148 -68 2524 93 0 0 chr3 62151836 62152148 -155885010 + AluSx SINE Alu 1 312 0 24 0 0 0 chr3 62152740 62152764 -155884394 + AT_rich Low_complexity Low_complexity 1 24 0 2683 30 0 0 chr3 62153063 62153361 -155883797 + AluY SINE Alu 1 298 -13 192 327 41 68 chr3 62153448 62153668 -155883490 + L2 LINE L2 1796 2009 -1305 180 328 49 0 chr3 62153698 62153759 -155883399 + MIR SINE MIR 193 256 -6 188 380 78 39 chr3 62154401 62154783 -155882375 + L2 LINE L2 2854 3250 -22 2354 155 43 9 chr3 62155733 62156152 -155881006 + Tigger2a DNA MER2_type 2 434 0 200 111 0 28 chr3 62157399 62157435 -155879723 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 1436 169 48 121 chr3 62157580 62157907 -155879251 - MLT1C LTR MaLR 0 467 188 2177 117 7 7 chr3 62157907 62158206 -155878952 - AluSx SINE Alu -13 299 1 1436 169 48 121 chr3 62158206 62158382 -155878776 - MLT1C LTR MaLR -279 188 1 1895 217 46 49 chr3 62159013 62159580 -155877578 - L1ME2 LINE L1 -10 6154 5590 1862 163 3 7 chr3 62159955 62160256 -155876902 - AluJb SINE Alu -12 300 1 2345 81 0 0 chr3 62161131 62161440 -155875718 - AluY SINE Alu -2 309 1 260 308 88 44 chr3 62161636 62161795 -155875363 + MER5A DNA MER1_type 24 189 0 550 306 50 18 chr3 62161810 62162032 -155875126 + MER112 DNA MER1_type 32 260 0 894 71 0 0 chr3 62162918 62163030 -155874128 + AluSq/x SINE Alu 1 112 -201 339 191 16 0 chr3 62163144 62163207 -155873951 + MER58 DNA MER1_type 2357 2420 0 795 265 71 0 chr3 62163867 62164063 -155873095 - MIR SINE MIR -38 224 15 254 300 154 15 chr3 62164038 62164168 -155872990 + MER5A DNA MER1_type 14 161 -28 * 2062 112 7 10 chr3 62164194 62164497 -155872661 - AluSq SINE Alu -11 302 1 442 298 92 60 chr3 62164930 62165279 -155871879 - L2 LINE L2 -49 3223 2864 194 0 39 0 chr3 62166320 62166346 -155870812 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1743 151 7 0 chr3 62166357 62166636 -155870522 + AluJb SINE Alu 12 292 -20 700 206 24 36 chr3 62166703 62166868 -155870290 + MIR SINE MIR 86 248 -14 202 318 15 0 chr3 62166907 62166973 -155870185 + MIR SINE MIR 63 129 -79 339 123 27 14 chr3 62167036 62167109 -155870049 + CT-rich Low_complexity Low_complexity 1 74 0 4504 150 60 3 chr3 62167110 62167890 -155869268 - L1MB7 LINE L1 -47 6137 5313 193 222 0 0 chr3 62167898 62167934 -155869224 - L2 LINE L2 -9 3263 3228 412 261 90 0 chr3 62168392 62168526 -155868632 + MIR SINE MIR 60 205 -57 3109 169 13 4 chr3 62169437 62169993 -155867165 + L1MB7 LINE L1 5580 6140 -44 673 271 106 25 chr3 62170421 62170959 -155866199 - L1ME LINE L1 -535 5627 5045 286 337 188 6 chr3 62171119 62171300 -155865858 - MIR SINE MIR -14 248 35 508 264 33 8 chr3 62171449 62171570 -155865588 - L2 LINE L2 0 3313 3190 2180 103 0 6 chr3 62172022 62172333 -155864825 + AluSc SINE Alu 1 309 0 1921 253 149 78 chr3 62172548 62173094 -155864064 + L2 LINE L2 1639 2145 -1169 1635 157 10 34 chr3 62173094 62173387 -155863771 + AluJo SINE Alu 16 301 -11 1921 253 149 78 chr3 62173387 62174078 -155863080 + L2 LINE L2 2145 2963 -351 207 191 0 43 chr3 62174173 62174189 -155862969 + A-rich Low_complexity Low_complexity 1 16 -29 2078 103 36 3 chr3 62174189 62174490 -155862668 + AluSx SINE Alu 1 311 -1 207 191 0 43 chr3 62174490 62174520 -155862638 + A-rich Low_complexity Low_complexity 16 45 0 2111 106 0 7 chr3 62174846 62175149 -155862009 + AluSq SINE Alu 1 301 -12 229 88 59 147 chr3 62175447 62175549 -155861609 + L1MC5 LINE L1 7837 7929 -32 1996 141 0 0 chr3 62176240 62176545 -155860613 + AluJb SINE Alu 1 305 -7 2001 189 12 12 chr3 62176598 62177010 -155860148 + L1MB3 LINE L1 5761 6172 -11 291 86 190 0 chr3 62177010 62177068 -155860090 + L1MB2 LINE L1 6101 6169 -2 280 269 102 9 chr3 62177935 62178043 -155859115 + LTR33A LTR ERVL 404 521 -2 990 225 93 119 chr3 62178112 62178901 -155858257 - L2 LINE L2 0 3313 2527 22 56 0 0 chr3 62179211 62179247 -155857911 + AT_rich Low_complexity Low_complexity 1 36 0 1648 171 10 29 chr3 62179508 62179817 -155857341 + AluJb SINE Alu 1 303 -9 32 0 0 0 chr3 62180518 62180550 -155856608 + AT_rich Low_complexity Low_complexity 1 32 0 1418 171 68 14 chr3 62180980 62181260 -155855898 - AluJb SINE Alu -13 299 5 210 308 144 29 chr3 62181560 62181664 -155855494 + L2 LINE L2 3153 3268 -4 867 85 78 0 chr3 62182028 62182157 -155855001 + MER85 DNA T2_type 1 139 0 1613 140 44 7 chr3 62182285 62182557 -155854601 - AluJo SINE Alu -25 287 6 980 160 11 51 chr3 62182701 62182876 -155854282 + FAM SINE Alu 1 168 -7 2378 59 3 3 chr3 62183071 62183375 -155853783 + AluY SINE Alu 1 304 -7 525 250 108 5 chr3 62184242 62184446 -155852712 + L1MC4a LINE L1 5700 5924 -1884 207 0 0 0 chr3 62184864 62184887 -155852271 + (A)n Simple_repeat Simple_repeat 1 23 0 244 222 122 44 chr3 62185836 62185926 -155851232 - L2 LINE L2 -2 3270 3174 326 250 44 111 chr3 62186057 62186237 -155850921 - L2 LINE L2 -2 3270 3103 822 161 15 0 chr3 62186380 62186510 -155850648 + MER2 DNA MER2_type 1 132 -213 2186 96 0 0 chr3 62186510 62186803 -155850355 - AluSg SINE Alu -17 293 1 237 361 37 0 chr3 62187412 62187520 -155849638 + L2 LINE L2 2869 2980 -292 1587 173 20 27 chr3 62187540 62187841 -155849317 + AluJo SINE Alu 1 299 -13 2094 101 0 3 chr3 62188580 62188867 -155848291 + AluSc SINE Alu 1 286 -23 417 215 0 0 chr3 62188874 62188967 -155848191 + GA-rich Low_complexity Low_complexity 2 94 0 183 80 0 0 chr3 62189367 62189392 -155847766 + (T)n Simple_repeat Simple_repeat 1 25 0 502 189 119 75 chr3 62189633 62189860 -155847298 - L1MC5 LINE L1 -106 7855 7619 1447 155 69 0 chr3 62190006 62190251 -155846907 - AluSx SINE Alu -6 306 45 2454 53 3 0 chr3 62190727 62191029 -155846129 - AluY SINE Alu -4 307 5 432 0 0 0 chr3 62191178 62191226 -155845932 + (TG)n Simple_repeat Simple_repeat 1 48 0 1272 169 7 76 chr3 62191228 62191530 -155845628 - AluJb SINE Alu -31 281 1 894 187 37 56 chr3 62191709 62191923 -155845235 - AluJo SINE Alu -17 295 86 322 272 18 71 chr3 62192061 62192230 -155844928 - L1MC5 LINE L1 -30 7931 7772 411 294 126 29 chr3 62192231 62192469 -155844689 - L1MC/D LINE L1 -2014 5794 5534 260 158 18 0 chr3 62192548 62192605 -155844553 + (TA)n Simple_repeat Simple_repeat 1 58 0 277 264 35 0 chr3 62192613 62192700 -155844458 - L1MC4 LINE L1 -150 7892 7803 2213 86 0 13 chr3 62192991 62193293 -155843865 + AluY SINE Alu 1 298 -13 353 68 0 0 chr3 62194738 62194805 -155842353 - Alu SINE Alu 0 304 238 186 93 74 0 chr3 62195005 62195059 -155842099 + T-rich Low_complexity Low_complexity 1 58 0 616 232 113 11 chr3 62195212 62195389 -155841769 - L2 LINE L2 -1 3312 3118 1945 126 7 26 chr3 62195764 62196073 -155841085 - AluJo SINE Alu -9 303 1 2232 80 10 0 chr3 62196230 62196518 -155840640 - AluSc SINE Alu -18 291 1 372 59 0 0 chr3 62197106 62197157 -155840001 + (TG)n Simple_repeat Simple_repeat 2 52 0 748 162 0 0 chr3 62197267 62197384 -155839774 - FLAM_C SINE Alu -8 135 19 293 266 51 0 chr3 62197401 62197480 -155839678 + MER5A DNA MER1_type 68 150 -39 1405 187 30 0 chr3 62197486 62197754 -155839404 - AluJo SINE Alu -26 286 11 624 129 0 65 chr3 62197757 62197881 -155839277 - AluJo SINE Alu -170 142 27 238 196 39 20 chr3 62198412 62198463 -155838695 + MIR SINE MIR 90 141 -121 300 296 23 0 chr3 62198470 62198558 -155838600 + L2 LINE L2 3160 3249 -23 239 194 136 58 chr3 62200201 62200304 -155836854 + L2 LINE L2 3157 3267 -5 284 298 60 33 chr3 62201319 62201470 -155835688 - MER5A DNA MER1_type -3 186 32 2272 84 0 0 chr3 62202349 62202647 -155834511 - AluSg SINE Alu -12 298 1 1429 144 48 26 chr3 62202649 62202919 -155834239 - AluJo SINE Alu -16 296 21 1571 136 44 34 chr3 62203680 62203974 -155833184 + AluJo SINE Alu 1 297 -15 254 174 41 41 chr3 62205025 62205097 -155832061 - L1M4 LINE L1 -803 5343 5269 2071 157 5 50 chr3 62205097 62205282 -155831876 - MER47A DNA MER2_type -1957 366 205 2118 122 0 0 chr3 62205282 62205586 -155831572 + AluSq SINE Alu 3 306 -7 2071 157 5 50 chr3 62205586 62205783 -155831375 - MER47A DNA MER2_type -2118 205 1 254 174 41 41 chr3 62205783 62205808 -155831350 - L1M4 LINE L1 -876 5270 5246 361 273 38 30 chr3 62205964 62206096 -155831062 + MIR SINE MIR 105 237 -25 2064 220 36 42 chr3 62206863 62207147 -155830011 - L1ME2 LINE L1 -9 6155 5871 1645 125 3 70 chr3 62207147 62207474 -155829684 - AluJb SINE Alu -7 305 1 2064 220 36 42 chr3 62207474 62207767 -155829391 - L1ME2 LINE L1 -293 5871 5581 180 310 28 14 chr3 62207997 62208068 -155829090 - MIR SINE MIR -12 250 179 210 250 150 0 chr3 62208261 62208341 -155828817 - MIR SINE MIR -87 121 30 1903 140 13 7 chr3 62208533 62208840 -155828318 + AluSx SINE Alu 1 309 -3 344 191 29 9 chr3 62208840 62208933 -155828225 + GA-rich Low_complexity Low_complexity 1 98 -9 2313 75 7 0 chr3 62208933 62209226 -155827932 + AluY SINE Alu 1 295 -16 344 191 29 9 chr3 62209226 62209237 -155827921 + GA-rich Low_complexity Low_complexity 98 107 0 1084 58 35 12 chr3 62209239 62209412 -155827746 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 1705 117 30 0 chr3 62210466 62210731 -155826427 + AluY SINE Alu 39 311 0 189 0 0 0 chr3 62211124 62211145 -155826013 + (TA)n Simple_repeat Simple_repeat 2 22 0 2008 96 24 3 chr3 62212693 62212984 -155824174 - AluSx SINE Alu -10 302 6 2253 79 0 3 chr3 62213087 62213378 -155823780 - AluSx SINE Alu -22 290 1 2100 105 0 3 chr3 62213863 62214157 -155823001 + AluSq SINE Alu 1 293 -20 330 301 119 34 chr3 62216330 62216566 -155820592 + MIR SINE MIR 4 259 -3 37 39 0 0 chr3 62216600 62216651 -155820507 + AT_rich Low_complexity Low_complexity 1 51 0 474 275 93 57 chr3 62219449 62219488 -155817670 - MIR SINE MIR -4 258 222 1382 126 19 0 chr3 62219488 62219703 -155817455 - MER20 DNA MER1_type 0 219 1 474 275 93 57 chr3 62219703 62219910 -155817248 - MIR SINE MIR -40 222 3 1735 125 66 21 chr3 62220005 62220293 -155816865 - AluJo SINE Alu -11 301 1 1093 144 35 48 chr3 62221119 62221348 -155815810 + AluJo SINE Alu 85 310 -2 1641 132 0 0 chr3 62221447 62221689 -155815469 - AluJb SINE Alu -13 299 58 304 22 0 0 chr3 62221694 62221739 -155815419 + AluY SINE Alu 264 308 0 365 305 15 23 chr3 62222233 62222364 -155814794 - MIR SINE MIR -59 149 20 266 331 61 60 chr3 62223169 62223472 -155813686 - L2 LINE L2 -186 3127 2826 2021 107 0 13 chr3 62223472 62223770 -155813388 - AluSg SINE Alu -16 294 1 266 331 61 60 chr3 62223770 62223781 -155813377 - L2 LINE L2 -487 2826 2817 1984 117 0 7 chr3 62223781 62224080 -155813078 - AluSg SINE Alu -13 297 1 266 331 61 60 chr3 62224080 62224185 -155812973 - L2 LINE L2 -496 2817 2702 1809 112 8 0 chr3 62224601 62224859 -155812299 + AluJb SINE Alu 31 290 -22 1052 70 0 0 chr3 62224868 62224997 -155812161 + AluSg SINE Alu 1 129 -181 1142 274 4 4 chr3 62225387 62225668 -155811490 - AluSx SINE Alu -31 281 1 378 296 107 35 chr3 62226472 62226641 -155810517 - MIR SINE MIR -54 208 28 2108 101 27 3 chr3 62226700 62226996 -155810162 - AluY SINE Alu -8 303 1 571 195 195 31 chr3 62230112 62230369 -155806789 + HAL1 LINE L1 1981 2279 -228 1757 139 24 17 chr3 62230387 62230682 -155806476 + AluJo SINE Alu 1 297 -15 234 239 0 75 chr3 62230803 62230870 -155806288 + HAL1 LINE L1 2446 2507 0 239 227 62 62 chr3 62230914 62231011 -155806147 - MIR SINE MIR -138 124 28 181 264 19 19 chr3 62231311 62231364 -155805794 + MER5B DNA MER1_type 76 128 -50 1626 160 35 11 chr3 62232182 62232464 -155804694 + AluJo SINE Alu 1 289 -23 221 259 165 58 chr3 62232609 62232754 -155804404 - MIR3 SINE MIR -41 167 28 1759 124 62 0 chr3 62233167 62233442 -155803716 + AluSx SINE Alu 1 292 -20 546 213 77 26 chr3 62234381 62234536 -155802622 - MIR SINE MIR -35 227 65 294 283 58 17 chr3 62235285 62235405 -155801753 - MIR3 SINE MIR -71 137 13 1458 147 4 4 chr3 62235656 62235894 -155801264 - AluJb SINE Alu -8 304 67 1912 138 14 0 chr3 62235912 62236203 -155800955 + AluSx SINE Alu 1 295 -17 264 59 0 0 chr3 62236206 62236240 -155800918 + (TAA)n Simple_repeat Simple_repeat 2 35 0 395 275 96 30 chr3 62236302 62236469 -155800689 + MIR SINE MIR 77 254 -8 2087 120 0 16 chr3 62236631 62236940 -155800218 + AluSx SINE Alu 1 304 -8 1549 128 94 44 chr3 62236946 62237243 -155799915 + AluJo SINE Alu 1 312 0 2322 93 0 0 chr3 62240021 62240331 -155796827 - AluSx SINE Alu -2 310 1 215 246 309 18 chr3 62240360 62240470 -155796688 - MIR SINE MIR -57 205 64 1564 275 157 12 chr3 62240593 62240727 -155796431 - L2 LINE L2 -4 3309 3196 15530 130 40 35 chr3 62240727 62241719 -155795439 + Tigger2 DNA MER2_type 1 988 -1730 2276 84 3 0 chr3 62241719 62242016 -155795142 + AluSp SINE Alu 3 300 -13 15530 130 40 35 chr3 62242016 62242209 -155794949 + Tigger2 DNA MER2_type 988 1179 -1539 1540 185 0 46 chr3 62242209 62242512 -155794646 - AluJb SINE Alu -23 289 1 15530 130 40 35 chr3 62242512 62243280 -155793878 + Tigger2 DNA MER2_type 1179 1942 -776 2288 85 0 3 chr3 62243280 62243587 -155793571 + AluSx SINE Alu 1 306 -6 15530 130 40 35 chr3 62243587 62244337 -155792821 + Tigger2 DNA MER2_type 1942 2717 -1 1564 275 157 12 chr3 62244337 62245037 -155792121 - L2 LINE L2 -117 3196 2352 24 0 0 0 chr3 62245516 62245540 -155791618 + AT_rich Low_complexity Low_complexity 1 24 0 387 0 0 0 chr3 62245560 62245603 -155791555 + (TG)n Simple_repeat Simple_repeat 2 44 0 182 250 33 67 chr3 62246278 62246338 -155790820 + MIR SINE MIR 205 262 0 261 241 216 26 chr3 62246375 62246430 -155790728 - MIR SINE MIR -105 157 114 5754 111 67 136 chr3 62246430 62246694 -155790464 - Tigger3b DNA MER2_type -1797 1231 951 2293 103 0 0 chr3 62246694 62247005 -155790153 + AluSx SINE Alu 1 311 -1 5754 111 67 136 chr3 62247005 62247318 -155789840 - Tigger3b DNA MER2_type -2077 951 618 1959 114 7 33 chr3 62247318 62247624 -155789534 + AluSx SINE Alu 1 298 -14 5754 111 67 136 chr3 62247624 62248366 -155788792 - Tigger3b DNA MER2_type -2410 618 1 261 241 216 26 chr3 62248366 62248426 -155788732 - MIR SINE MIR -148 114 20 778 102 110 16 chr3 62250159 62250286 -155786872 + AluY SINE Alu 173 311 0 2004 127 17 0 chr3 62250352 62250651 -155786507 + AluSc SINE Alu 1 304 -5 278 179 0 15 chr3 62251495 62251562 -155785596 + GA-rich Low_complexity Low_complexity 3 68 0 1152 168 117 98 chr3 62252125 62252173 -155784985 + MLT1A1 LTR MaLR 1 47 -318 2165 102 3 0 chr3 62252173 62252477 -155784681 - AluSq SINE Alu -8 305 1 1152 168 117 98 chr3 62252477 62252786 -155784372 + MLT1A1 LTR MaLR 47 365 0 326 273 127 79 chr3 62252791 62253106 -155784052 - L3 LINE CR1 -87 1490 1161 877 127 38 6 chr3 62253132 62253289 -155783869 + L1MA2 LINE L1 6143 6304 0 32 0 0 0 chr3 62253289 62253321 -155783837 + AT_rich Low_complexity Low_complexity 1 32 0 1035 196 88 74 chr3 62255051 62255337 -155781821 + L1MC5 LINE L1 7071 7367 -594 2090 122 0 0 chr3 62255337 62255633 -155781525 - AluSx SINE Alu -16 296 1 1035 196 88 74 chr3 62255633 62255791 -155781367 + L1MC5 LINE L1 7367 7521 -440 295 70 0 53 chr3 62255837 62255894 -155781264 + (GAAA)n Simple_repeat Simple_repeat 3 56 0 291 293 10 0 chr3 62255903 62256002 -155781156 + L1ME LINE L1 4442 4541 -1605 * 998 170 77 71 chr3 62255999 62256224 -155780934 + L1ME LINE L1 4863 5092 -1054 1613 162 3 39 chr3 62256224 62256533 -155780625 - AluJb SINE Alu -14 298 1 998 170 77 71 chr3 62256533 62256618 -155780540 + L1ME LINE L1 5092 5175 -971 1949 121 3 0 chr3 62256637 62256934 -155780224 + AluSx SINE Alu 15 312 0 698 144 170 0 chr3 62256934 62257087 -155780071 + L1ME LINE L1 5594 5772 -394 778 141 0 70 chr3 62257477 62257619 -155779539 - FLAM_C SINE Alu -1 132 1 1938 132 0 0 chr3 62258222 62258502 -155778656 + AluSx SINE Alu 1 280 -32 22 0 0 0 chr3 62258957 62258979 -155778179 + AT_rich Low_complexity Low_complexity 1 22 0 886 119 52 108 chr3 62258980 62259041 -155778117 - L1MD1 LINE L1 -7 6235 6172 1805 170 3 3 chr3 62259041 62259353 -155777805 + AluJb SINE Alu 1 312 0 886 119 52 108 chr3 62259353 62259485 -155777673 - L1MD1 LINE L1 -70 6172 6053 26 30 0 0 chr3 62260180 62260213 -155776945 + AT_rich Low_complexity Low_complexity 1 33 0 2483 70 0 10 chr3 62260227 62260528 -155776630 - AluY SINE Alu -13 298 1 421 303 80 65 chr3 62260854 62260951 -155776207 - L1 LINE L1 -2763 3619 3525 319 308 0 44 chr3 62260951 62261133 -155776025 + T-rich Low_complexity Low_complexity 1 174 0 421 303 80 65 chr3 62261133 62261300 -155775858 - L1 LINE L1 -2857 3525 803 231 301 31 18 chr3 62261371 62261534 -155775624 + (TGAG)n Simple_repeat Simple_repeat 4 168 0 * 440 304 12 0 chr3 62261431 62261592 -155775566 + (TG)n Simple_repeat Simple_repeat 1 163 0 244 279 7 36 chr3 62261608 62261748 -155775410 + (TG)n Simple_repeat Simple_repeat 1 136 0 422 261 206 12 chr3 62261942 62262108 -155775050 - MIR3 SINE MIR -7 201 11 324 0 0 0 chr3 62262130 62262166 -155774992 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 466 296 43 6 chr3 62262725 62262887 -155774271 - MIR SINE MIR -32 230 63 251 301 249 6 chr3 62263111 62263284 -155773874 - MIR SINE MIR -21 241 27 442 255 117 7 chr3 62263575 62263720 -155773438 + MIR SINE MIR 87 247 -15 210 115 0 154 chr3 62263688 62263740 -155773418 + L2 LINE L2 3220 3263 -9 * 887 168 45 0 chr3 62264141 62264320 -155772838 + LTR33A LTR ERVL 329 515 -8 231 229 125 10 chr3 62264495 62264591 -155772567 - LTR33A LTR ERVL -229 294 188 241 267 12 47 chr3 62264747 62264833 -155772325 + MIR3 SINE MIR 126 208 0 2252 115 16 0 chr3 62265095 62265399 -155771759 - AluSx SINE Alu -3 309 1 326 250 25 0 chr3 62265964 62266044 -155771114 - MIR SINE MIR -104 158 77 391 256 105 124 chr3 62266598 62266856 -155770302 + L2 LINE L2 3020 3272 0 194 230 30 150 chr3 62266854 62266954 -155770204 - MIR SINE MIR -61 201 114 * 540 261 53 21 chr3 62267604 62267792 -155769366 + MER117 DNA MER1_type 2 195 -2 561 299 6 0 chr3 62268661 62268825 -155768333 + MIR SINE MIR 82 246 -16 2122 101 0 4 chr3 62269341 62269608 -155767550 + AluSx SINE Alu 17 282 -30 1380 123 14 19 chr3 62269737 62269949 -155767209 + AluSg/x SINE Alu 95 305 -5 866 143 0 15 chr3 62270849 62270982 -155766176 + AluJo SINE Alu 21 151 -161 841 175 0 0 chr3 62271294 62271420 -155765738 + AluJo/FLAM SINE Alu 2 127 -185 549 148 0 0 chr3 62271420 62271508 -155765650 + AluJ/FRAM SINE Alu 217 304 -8 910 222 0 21 chr3 62271630 62271824 -155765334 + MLT2B2 LTR ERVL 1 190 -325 1560 113 185 69 chr3 62271830 62272027 -155765131 - MER4A LTR ERV1 0 664 491 2063 96 78 3 chr3 62272027 62272309 -155764849 + AluSg SINE Alu 1 303 -7 1560 113 185 69 chr3 62272309 62272473 -155764685 - MER4A LTR ERV1 -173 491 261 248 73 24 24 chr3 62272473 62272514 -155764644 - MER4A LTR ERV1 -566 98 58 249 114 0 0 chr3 62272530 62272602 -155764556 + FAM SINE Alu 124 195 0 680 214 24 13 chr3 62272608 62272782 -155764376 + MLT2B1 LTR ERVL 217 446 -74 180 0 0 0 chr3 62272782 62272802 -155764356 + (T)n Simple_repeat Simple_repeat 1 20 0 1559 215 0 0 chr3 62272921 62273205 -155763953 + AluJb SINE Alu 27 310 -2 2196 135 25 38 chr3 62273211 62273604 -155763554 - MSTB LTR MaLR -38 388 1 1995 162 97 2 chr3 62273604 62274018 -155763140 - L1MB3 LINE L1 -108 6075 5623 346 188 83 47 chr3 62274310 62274432 -155762726 + L1ME2 LINE L1 5983 6108 -58 1895 136 65 4 chr3 62274447 62274726 -155762432 + AluSg SINE Alu 1 296 -14 655 154 9 0 chr3 62275738 62275848 -155761310 + HY1 scRNA scRNA 1 111 -1 306 0 0 0 chr3 62275848 62275882 -155761276 + (A)n Simple_repeat Simple_repeat 1 34 0 261 0 0 0 chr3 62276367 62276396 -155760762 + (T)n Simple_repeat Simple_repeat 1 29 0 249 191 0 0 chr3 62276790 62276837 -155760321 - L1ME4a LINE L1 -85 6036 5990 369 171 3 26 chr3 62276921 62277002 -155760156 - AluS SINE Alu -241 60 1 346 188 83 47 chr3 62277644 62277766 -155759392 + L1ME2 LINE L1 5983 6108 -58 1962 96 77 0 chr3 62277781 62278041 -155759117 + AluSg SINE Alu 1 280 -30 669 170 0 0 chr3 62278042 62278148 -155759010 - AluJb SINE Alu -17 295 190 1705 142 4 16 chr3 62278323 62278576 -155758582 - AluSx SINE Alu -62 250 1 220 271 9 65 chr3 62280055 62280162 -155756996 + L2 LINE L2 2884 2984 -329 246 285 29 87 chr3 62280322 62280529 -155756629 + L2 LINE L2 2862 3056 -216 2234 106 3 0 chr3 62280548 62280840 -155756318 - AluSx SINE Alu -9 303 11 195 245 0 0 chr3 62280953 62281002 -155756156 - L2 LINE L2 -14 3258 3210 228 176 59 0 chr3 62281047 62281098 -155756060 - MIR SINE MIR -91 117 64 236 234 106 21 chr3 62281583 62281677 -155755481 + MIR SINE MIR 48 149 -59 216 240 40 13 chr3 62281870 62281945 -155755213 - MIR SINE MIR -147 115 39 196 229 180 0 chr3 62282021 62282082 -155755076 + MIR SINE MIR 81 152 -56 421 285 126 34 chr3 62282848 62283312 -155753846 - L2 LINE L2 -199 3073 2564 354 162 15 0 chr3 62284879 62284947 -155752211 - MIR SINE MIR -66 142 74 234 0 0 0 chr3 62286048 62286074 -155751084 + (CGGGG)n Simple_repeat Simple_repeat 2 27 0 218 228 272 9 chr3 62286858 62286972 -155750186 - MIR SINE MIR -68 194 51 432 323 18 42 chr3 62287847 62288014 -155749144 - MIR SINE MIR -54 208 46 1162 184 9 9 chr3 62288450 62288662 -155748496 + MER20 DNA MER1_type 1 212 -7 508 244 12 38 chr3 62288672 62288832 -155748326 + MIR SINE MIR 21 176 -86 215 299 63 8 chr3 62289261 62289388 -155747770 - L2 LINE L2 -227 3045 2912 225 94 0 0 chr3 62289918 62289950 -155747208 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 210 159 0 23 chr3 62290534 62290578 -155746580 + (CGGGG)n Simple_repeat Simple_repeat 5 47 0 2030 131 90 3 chr3 62290750 62291140 -155746018 - L1MA1 LINE L1 0 6302 5879 24 0 0 0 chr3 62292912 62292936 -155744222 + AT_rich Low_complexity Low_complexity 1 24 0 257 306 72 27 chr3 62293028 62293139 -155744019 - L2 LINE L2 -18 3295 3180 190 269 58 0 chr3 62293377 62293429 -155743729 - L2 LINE L2 -1 3312 3258 234 284 74 0 chr3 62294242 62294323 -155742835 + MIR SINE MIR 60 146 -116 896 182 102 0 chr3 62295101 62295277 -155741881 - AluJb SINE Alu -6 306 113 2136 117 3 10 chr3 62295453 62295751 -155741407 - AluSx SINE Alu -16 296 1 455 126 58 0 chr3 62296138 62296225 -155740933 - L1MB3 LINE L1 -7 6176 6085 1895 209 7 82 chr3 62296226 62296838 -155740320 - L1MD3 LINE L1 -2133 5862 5297 2083 124 34 0 chr3 62296911 62297209 -155739949 - AluSx SINE Alu -4 308 1 1741 198 0 0 chr3 62297492 62297780 -155739378 + AluJo SINE Alu 1 288 -24 359 240 116 8 chr3 62298004 62298125 -155739033 - MIR SINE MIR 0 262 129 1620 156 56 41 chr3 62298342 62298681 -155738477 + MER7A DNA MER2_type 4 345 -1 2191 94 0 24 chr3 62299442 62299729 -155737429 - AluSg SINE Alu -30 280 1 2337 100 0 3 chr3 62299896 62300195 -155736963 - AluSq SINE Alu -15 298 1 2017 156 0 10 chr3 62300197 62300504 -155736654 - AluSx SINE Alu -8 304 1 3400 168 55 65 chr3 62300770 62300827 -155736331 + L1MD2 LINE L1 5530 5586 -773 2033 98 4 8 chr3 62300827 62301091 -155736067 - AluSq SINE Alu -12 301 39 3400 168 55 65 chr3 62301091 62301868 -155735290 + L1MD2 LINE L1 5586 6356 -3 202 264 57 0 chr3 62301942 62301995 -155735163 - L2 LINE L2 -48 3265 3210 1227 223 67 35 chr3 62302020 62302164 -155734994 - L2 LINE L2 -78 3235 3097 2127 120 3 3 chr3 62302164 62302477 -155734681 - AluSx SINE Alu 0 312 3 1935 156 0 7 chr3 62302480 62302493 -155734665 - AluJo SINE Alu -13 299 287 243 0 0 0 chr3 62302493 62302520 -155734638 + (TTAAA)n Simple_repeat Simple_repeat 1 27 0 1935 156 0 7 chr3 62302520 62302807 -155734351 - AluJo SINE Alu -25 287 1 1227 223 67 35 chr3 62302807 62302821 -155734337 - L2 LINE L2 -217 3096 3084 1982 166 3 0 chr3 62302821 62303122 -155734036 - AluSx SINE Alu -10 302 1 1227 223 67 35 chr3 62303122 62303512 -155733646 - L2 LINE L2 -229 3084 2668 1471 169 49 16 chr3 62303625 62303932 -155733226 - THE1C LTR MaLR -58 317 1 580 237 0 0 chr3 62303933 62304051 -155733107 + L1M4 LINE L1 3463 3580 -2566 1721 146 90 0 chr3 62304475 62304743 -155732415 - AluJb SINE Alu -20 292 1 213 273 239 28 chr3 62305230 62305552 -155731606 - L2 LINE L2 -408 2906 2517 524 175 31 0 chr3 62305554 62305651 -155731507 + L1MA5 LINE L1 6017 6116 -184 2390 68 14 14 chr3 62305944 62306240 -155730918 - AluSp SINE Alu -17 296 1 877 200 18 24 chr3 62306242 62306412 -155730746 - FRAM SINE Alu -8 168 1 1242 149 60 0 chr3 62307027 62307228 -155729930 + AluJo SINE Alu 1 213 -99 1716 40 54 22 chr3 62307328 62307551 -155729607 + AluY SINE Alu 71 300 -11 1663 154 15 98 chr3 62307551 62307889 -155729269 + AluJb SINE Alu 3 312 0 1167 151 0 6 chr3 62308438 62308617 -155728541 + AluJo SINE Alu 1 178 -134 1167 152 15 5 chr3 62308619 62308816 -155728342 + AluJo SINE Alu 106 304 -8 2426 112 0 0 chr3 62309108 62309420 -155727738 - AluSx SINE Alu 0 312 1 1896 157 14 0 chr3 62309457 62309750 -155727408 - AluJb SINE Alu -15 297 1 1162 247 35 48 chr3 62309869 62310242 -155726916 + MLT1A2 LTR MaLR 1 368 -6 693 193 7 7 chr3 62310980 62311120 -155726038 + L1MB8 LINE L1 6022 6161 -17 2011 125 0 37 chr3 62311720 62312041 -155725117 - AluSg SINE Alu -1 309 1 1708 221 69 25 chr3 62312106 62312504 -155724654 - L1ME1 LINE L1 -84 6082 5658 2151 108 0 7 chr3 62312504 62312809 -155724349 - AluSx SINE Alu -8 304 2 1708 221 69 25 chr3 62312809 62312886 -155724272 - L1ME1 LINE L1 -508 5658 5586 361 233 78 0 chr3 62312873 62313002 -155724156 - L1ME1 LINE L1 -1098 5048 4910 * 724 121 0 0 chr3 62313621 62313720 -155723438 + FLAM_C SINE Alu 29 127 -16 927 90 17 119 chr3 62313821 62313894 -155723264 - L1M3 LINE L1 -654 5526 5447 1841 145 0 7 chr3 62313894 62314198 -155722960 + AluJb SINE Alu 2 303 -9 927 90 17 119 chr3 62314198 62314301 -155722857 - L1M3 LINE L1 -733 5447 5368 1098 178 5 5 chr3 62314397 62314588 -155722570 - MER46A DNA MER2_type 0 236 46 804 127 0 45 chr3 62314593 62314727 -155722431 - AluSg/x SINE Alu -13 299 172 484 121 0 0 chr3 62314727 62314793 -155722365 - AluSg/x SINE Alu -109 201 136 1657 176 24 41 chr3 62314800 62315215 -155721943 + L1MEc LINE L1 1957 2364 -4032 1330 206 3 28 chr3 62315215 62315348 -155721810 + AluJo SINE Alu 1 136 -202 2481 62 0 3 chr3 62315348 62315657 -155721501 + AluY SINE Alu 1 308 -3 2331 91 0 3 chr3 62315664 62315971 -155721187 + AluSp SINE Alu 1 306 -7 1330 206 3 28 chr3 62315971 62316174 -155720984 + AluJo SINE Alu 142 338 0 832 159 14 0 chr3 62316177 62316315 -155720843 + FRAM SINE Alu 5 144 -32 713 233 37 0 chr3 62316332 62316521 -155720637 + L1MEc LINE L1 2317 2512 -3703 408 100 100 80 chr3 62316537 62316603 -155720555 + MER41B LTR ERV1 446 516 -119 2287 92 0 3 chr3 62316603 62316907 -155720251 - AluSg SINE Alu -7 303 1 408 100 100 80 chr3 62316907 62316940 -155720218 + MER41B LTR ERV1 516 547 -88 1957 191 135 0 chr3 62316967 62317427 -155719731 + L1MEc LINE L1 2526 3047 -3168 321 140 0 0 chr3 62317437 62317494 -155719664 + L1MEc LINE L1 3454 3510 -2705 1259 169 0 5 chr3 62317504 62317717 -155719441 + AluSx SINE Alu 1 212 -100 607 94 47 0 chr3 62317717 62317802 -155719356 + AluSg/x SINE Alu 76 164 -146 432 117 13 0 chr3 62317902 62317979 -155719179 + L1MB4 LINE L1 6103 6180 0 369 0 0 0 chr3 62318020 62318061 -155719097 + (TA)n Simple_repeat Simple_repeat 1 41 0 2248 100 3 3 chr3 62318360 62318671 -155718487 - AluSx SINE Alu -1 311 1 2341 130 19 16 chr3 62318963 62319219 -155717939 + LTR8A LTR ERV1 1 260 -467 600 76 0 0 chr3 62319219 62319298 -155717860 - MADE1 DNA Mariner 0 80 2 2341 130 19 16 chr3 62319298 62319418 -155717740 + LTR8A LTR ERV1 260 378 -349 1870 121 10 46 chr3 62319423 62319730 -155717428 - AluSx SINE Alu -16 296 1 654 109 0 11 chr3 62319730 62319816 -155717342 - AluS SINE Alu -226 86 2 643 126 0 0 chr3 62319816 62319903 -155717255 - AluJ/FLAM SINE Alu -224 88 2 1050 122 149 50 chr3 62319904 62320166 -155716992 + LTR8A LTR ERV1 373 660 -67 1349 131 0 0 chr3 62320166 62320365 -155716793 - AluSg/x SINE Alu -8 304 106 596 155 0 0 chr3 62320367 62320451 -155716707 + LTR8 LTR ERV1 608 691 0 1687 146 21 10 chr3 62320839 62321127 -155716031 - AluSx SINE Alu -1 311 21 606 271 54 5 chr3 62321493 62321696 -155715462 - L1MEc LINE L1 -4591 1805 1593 280 268 5 110 chr3 62321709 62321918 -155715240 - L1MEc LINE L1 -4767 1629 1443 959 175 0 0 chr3 62321921 62322081 -155715077 - FRAM SINE Alu -4 172 13 2161 96 13 0 chr3 62322183 62322485 -155714673 - AluSp SINE Alu -7 306 1 2202 147 74 0 chr3 62322487 62322867 -155714291 - Tigger7 DNA MER2_type -289 444 37 1333 153 66 17 chr3 62322862 62323103 -155714055 - MER7A DNA MER2_type -94 252 2 * 265 148 56 0 chr3 62323103 62323148 -155714010 + MLT2B2 LTR ERVL 468 515 0 533 211 0 0 chr3 62323187 62323291 -155713867 - U13 snRNA snRNA 0 104 1 24 0 0 0 chr3 62323442 62323466 -155713692 + AT_rich Low_complexity Low_complexity 1 24 0 1644 89 9 0 chr3 62324518 62324742 -155712416 - AluSg/x SINE Alu -2 308 83 234 0 0 0 chr3 62327332 62327358 -155709800 + (T)n Simple_repeat Simple_repeat 1 26 0 248 191 0 0 chr3 62327753 62327800 -155709358 - L1ME4a LINE L1 -85 6036 5990 325 307 188 0 chr3 62328090 62328266 -155708892 + L1ME4a LINE L1 5488 5696 -425 228 304 13 0 chr3 62328535 62328614 -155708544 + L1ME4a LINE L1 5975 6054 -67 1336 200 59 7 chr3 62328731 62329021 -155708137 - AluJo SINE Alu -7 305 1 1654 169 16 32 chr3 62329028 62329342 -155707816 - AluJo SINE Alu -3 309 1 2217 100 0 3 chr3 62329531 62329831 -155707327 + AluSc SINE Alu 1 299 -10 1504 182 7 17 chr3 62329919 62330215 -155706943 + AluJb SINE Alu 1 293 -19 185 280 20 0 chr3 62331865 62331915 -155705243 + L2 LINE L2 3262 3312 -1 818 159 14 28 chr3 62332412 62332557 -155704601 - FRAM SINE Alu -30 146 4 2269 73 13 0 chr3 62332931 62333232 -155703926 - AluY SINE Alu -6 305 1 1372 159 0 0 chr3 62333662 62333876 -155703282 + AluJb SINE Alu 85 298 -14 783 142 9 0 chr3 62334085 62334198 -155702960 + AluJb SINE Alu 2 115 -197 2393 71 0 3 chr3 62334399 62334710 -155702448 - AluY SINE Alu -1 310 1 876 167 105 154 chr3 62335092 62335398 -155701760 - AluJo SINE Alu -9 293 3 2109 104 3 0 chr3 62335807 62336120 -155701038 - AluSp SINE Alu 0 314 1 755 213 0 0 chr3 62336225 62336352 -155700806 + FLAM_A SINE Alu 1 127 -6 1754 168 0 9 chr3 62336677 62336992 -155700166 + AluJo SINE Alu 1 312 0 430 286 136 14 chr3 62337644 62337864 -155699294 + L1ME4a LINE L1 5738 5984 -137 23 0 0 0 chr3 62337891 62337914 -155699244 + AT_rich Low_complexity Low_complexity 1 23 0 1909 143 0 7 chr3 62338776 62339042 -155698116 - AluSx SINE Alu 0 400 135 2216 110 0 0 chr3 62339042 62339342 -155697816 - AluSg SINE Alu -10 300 1 1909 143 0 7 chr3 62339342 62339477 -155697681 - AluSx SINE Alu -265 135 1 346 253 167 35 chr3 62339490 62339544 -155697614 - L1ME4a LINE L1 -5 6116 6071 1718 165 7 7 chr3 62339544 62339841 -155697317 - AluJo SINE Alu -15 297 1 346 253 167 35 chr3 62339841 62339960 -155697198 - L1ME4a LINE L1 -50 6071 5920 1519 167 20 39 chr3 62339961 62340099 -155697059 + AluJo SINE Alu 1 140 -172 2256 99 0 0 chr3 62340099 62340401 -155696757 + AluSx SINE Alu 1 302 -10 1519 167 20 39 chr3 62340401 62340567 -155696591 + AluJo SINE Alu 140 299 -13 1537 126 23 114 chr3 62340693 62341035 -155696123 + AluYb8 SINE Alu 1 311 -7 336 322 25 20 chr3 62341073 62341275 -155695883 - L1ME4a LINE L1 -265 5856 5654 201 39 0 0 chr3 62341969 62341995 -155695163 + (TC)n Simple_repeat Simple_repeat 2 27 0 1831 158 24 0 chr3 62341995 62342286 -155694872 - AluJb SINE Alu -14 298 1 294 200 0 43 chr3 62342324 62342394 -155694764 - L1MB7 LINE L1 -20 6164 6098 2306 163 62 45 chr3 62342401 62342867 -155694291 - MER21B LTR ERV1 0 863 390 527 195 29 170 chr3 62342845 62343086 -155694072 - MER21B LTR ERV1 -652 211 5 * 2215 118 0 0 chr3 62343095 62343401 -155693757 + AluSx SINE Alu 1 306 -6 304 148 0 0 chr3 62343401 62343455 -155693703 + L1M1 LINE L1 5727 5780 -523 2245 105 3 0 chr3 62343455 62343760 -155693398 + AluSg SINE Alu 1 306 -4 795 149 0 16 chr3 62343772 62343893 -155693265 + FRAM SINE Alu 34 152 -24 2116 97 0 31 chr3 62343902 62344223 -155692935 + AluSx SINE Alu 1 311 -1 473 101 165 0 chr3 62344338 62344417 -155692741 - AluJb SINE Alu -11 301 210 1887 120 10 42 chr3 62344547 62344855 -155692303 - AluSx SINE Alu -14 298 1 1420 184 24 27 chr3 62345681 62345975 -155691183 + AluJo SINE Alu 1 293 -19 1432 185 42 68 chr3 62346201 62346424 -155690734 + MSTB1 LTR MaLR 14 174 -258 2003 148 3 0 chr3 62346424 62346735 -155690423 - AluSx SINE Alu 0 312 1 1432 185 42 68 chr3 62346735 62346988 -155690170 + MSTB1 LTR MaLR 174 432 0 349 196 0 22 chr3 62347675 62347767 -155689391 - MER20B DNA MER1_type -30 753 664 492 158 63 21 chr3 62347850 62347945 -155689213 + AluJ/FLAM SINE Alu 1 99 -213 2239 102 0 0 chr3 62347970 62348273 -155688885 + AluSx SINE Alu 1 303 -9 663 175 0 0 chr3 62348378 62348481 -155688677 + FLAM_A SINE Alu 12 114 -28 1502 145 48 0 chr3 62348621 62348742 -155688416 + AluJb SINE Alu 1 115 -197 402 21 0 0 chr3 62348742 62348789 -155688369 + (CA)n Simple_repeat Simple_repeat 2 48 0 1502 145 48 0 chr3 62348789 62348915 -155688243 + AluJb SINE Alu 115 260 -52 944 93 7 14 chr3 62348936 62349075 -155688083 + AluSq/x SINE Alu 1 138 -175 2247 92 0 0 chr3 62349435 62349729 -155687429 - AluSg SINE Alu -16 294 1 1535 151 4 8 chr3 62350857 62351116 -155686042 + AluSx SINE Alu 50 307 -5 2028 113 3 7 chr3 62351121 62351423 -155685735 + AluSg SINE Alu 1 301 -9 510 110 27 0 chr3 62351423 62351496 -155685662 - MLT2C1 LTR ERVL -322 75 1 232 109 18 36 chr3 62351496 62351551 -155685607 + L1ME4a LINE L1 6057 6110 -11 3044 198 8 32 chr3 62351574 62351643 -155685515 + L1MB8 LINE L1 5427 5496 -682 2074 110 3 13 chr3 62351643 62351944 -155685214 + AluSg SINE Alu 1 298 -12 3044 198 8 32 chr3 62351944 62352526 -155684632 + L1MB8 LINE L1 5496 6062 -116 880 197 37 45 chr3 62352529 62352798 -155684360 + AluJb SINE Alu 1 267 -45 287 349 18 0 chr3 62353324 62353433 -155683725 - L2 LINE L2 -5 3308 3198 236 323 45 8 chr3 62353512 62353645 -155683513 - L2 LINE L2 -322 2991 2854 2633 164 56 126 chr3 62354007 62354722 -155682436 - MER21A LTR ERV1 -6 925 261 674 189 16 0 chr3 62354879 62355001 -155682157 - MER39 LTR ERV1 -319 388 265 580 158 169 87 chr3 62354982 62355165 -155681993 - MER21A LTR ERV1 -733 198 1 * 214 237 0 79 chr3 62355849 62355925 -155681233 + MIR SINE MIR 122 191 -71 1606 187 3 0 chr3 62356218 62356512 -155680646 + AluJb SINE Alu 1 295 -17 2139 78 18 0 chr3 62356541 62356823 -155680335 + AluSp SINE Alu 1 287 -26 229 261 130 0 chr3 62356872 62356941 -155680217 + MIR SINE MIR 67 144 -118 205 135 39 0 chr3 62357165 62357217 -155679941 + (CCCCG)n Simple_repeat Simple_repeat 5 58 0 24 0 0 0 chr3 62357227 62357251 -155679907 + GC_rich Low_complexity Low_complexity 1 24 0 30 45 0 0 chr3 62357443 62357487 -155679671 + GC_rich Low_complexity Low_complexity 1 44 0 354 254 136 0 chr3 62357866 62357984 -155679174 - MIR SINE MIR -116 146 13 199 323 21 21 chr3 62358487 62358580 -155678578 + MIR SINE MIR 93 185 -77 367 232 97 9 chr3 62359217 62359324 -155677834 - MIR SINE MIR -65 143 70 878 133 0 0 chr3 62359371 62359499 -155677659 + AluJo/FLAM SINE Alu 1 128 -174 860 147 0 7 chr3 62359499 62359635 -155677523 - AluSg/x SINE Alu -20 290 156 974 145 54 11 chr3 62359735 62359849 -155677309 - L1MB7 LINE L1 -237 5947 5820 1412 175 44 40 chr3 62359849 62360146 -155677012 - AluJb SINE Alu -4 298 1 974 145 54 11 chr3 62360146 62360217 -155676941 - L1MB7 LINE L1 -364 5820 5754 339 289 44 0 chr3 62360231 62360321 -155676837 + MIR SINE MIR 53 146 -62 363 269 186 14 chr3 62360327 62360472 -155676686 - MIR SINE MIR -8 254 85 535 264 207 32 chr3 62360476 62360790 -155676368 - L2 LINE L2 -8 3305 2937 1603 98 25 20 chr3 62360845 62361089 -155676069 - AluSx SINE Alu -6 306 62 2227 99 0 0 chr3 62361124 62361418 -155675740 - AluSq SINE Alu -9 304 11 2275 91 7 0 chr3 62361623 62361932 -155675226 - AluSp SINE Alu -2 311 1 366 290 55 65 chr3 62361991 62362205 -155674953 - L1MC4a LINE L1 -1902 5906 5694 2130 138 0 0 chr3 62362205 62362517 -155674641 - AluSx SINE Alu 0 312 1 366 290 55 65 chr3 62362517 62362612 -155674546 - L1MC4a LINE L1 -2114 5694 5600 240 243 0 27 chr3 62362616 62362690 -155674468 - L1MC4a LINE L1 -2653 3493 3422 2160 120 0 3 chr3 62362692 62363001 -155674157 - AluSx SINE Alu -4 308 1 2276 99 0 7 chr3 62363178 62363481 -155673677 - AluSq SINE Alu -12 301 1 216 0 0 0 chr3 62365154 62365178 -155671980 + (AGCTG)n Simple_repeat Simple_repeat 1 24 0 356 194 0 86 chr3 62367888 62367981 -155669177 - MIR SINE MIR -129 133 49 416 258 180 6 chr3 62368371 62368538 -155668620 - MIR SINE MIR -59 203 8 1392 170 16 12 chr3 62368943 62369190 -155667968 + AluJo SINE Alu 45 292 -20 2183 140 39 22 chr3 62369217 62369575 -155667583 - THE1B LTR MaLR 0 364 1 252 288 25 76 chr3 62369610 62369728 -155667430 - MIR SINE MIR -35 227 116 2289 89 0 16 chr3 62370549 62370863 -155666295 - AluSc SINE Alu 0 309 1 360 0 0 0 chr3 62370968 62371008 -155666150 + (TG)n Simple_repeat Simple_repeat 2 41 0 338 276 35 79 chr3 62371011 62371090 -155666068 - L1ME4a LINE L1 -216 5905 5824 2134 118 0 13 chr3 62371090 62371396 -155665762 - AluSx SINE Alu -4 308 7 338 276 35 79 chr3 62371396 62371519 -155665639 - L1ME4a LINE L1 -297 5824 5712 251 261 34 17 chr3 62372421 62372509 -155664649 + MIR SINE MIR 17 102 -106 192 339 69 31 chr3 62374343 62374473 -155662685 - MIR SINE MIR -112 150 16 412 279 144 19 chr3 62374477 62374685 -155662473 + MIR SINE MIR 29 262 0 185 225 0 25 chr3 62375508 62375548 -155661610 - MIR SINE MIR -189 73 35 237 247 62 10 chr3 62375934 62376031 -155661127 - MIR SINE MIR -59 149 48 244 276 31 41 chr3 62377332 62377430 -155659728 - MIR SINE MIR -86 122 26 222 291 185 33 chr3 62378556 62378707 -155658451 - L3 LINE CR1 -79 1498 1325 188 33 0 33 chr3 62380509 62380539 -155656619 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 187 299 182 0 chr3 62380595 62380672 -155656486 - L2 LINE L2 -13 3259 3169 408 301 102 0 chr3 62380697 62380863 -155656295 + MIR SINE MIR 8 190 -72 771 151 7 29 chr3 62382284 62382423 -155654735 + AluJb SINE Alu 1 136 -176 199 314 57 0 chr3 62383353 62383423 -155653735 - MER5A DNA MER1_type -1 188 115 183 253 36 48 chr3 62383911 62383994 -155653164 - MIR SINE MIR -90 118 37 472 299 109 5 chr3 62384961 62385162 -155651996 + MIR SINE MIR 33 254 -8 974 192 53 53 chr3 62385410 62385471 -155651687 - L1MEc LINE L1 -5471 925 865 2496 71 0 0 chr3 62385471 62385779 -155651379 - AluY SINE Alu -3 308 1 974 192 53 53 chr3 62385779 62385810 -155651348 - L1MEc LINE L1 -5531 865 835 2069 141 0 3 chr3 62385810 62386114 -155651044 - AluSx SINE Alu -9 303 1 974 192 53 53 chr3 62386114 62386322 -155650836 - L1MEc LINE L1 -5560 836 624 1376 148 10 0 chr3 62386325 62386534 -155650624 - AluJo SINE Alu -16 296 86 1983 220 42 37 chr3 62386535 62387131 -155650027 - L1MEc LINE L1 -5762 634 36 250 308 0 22 chr3 62387144 62387235 -155649923 + L1MC/D LINE L1 5764 5852 -1933 996 144 0 24 chr3 62387247 62387414 -155649744 - AluSg/x SINE Alu -15 297 135 2162 135 0 0 chr3 62387416 62387728 -155649430 - AluSx SINE Alu 0 312 1 2144 96 45 0 chr3 62387803 62388095 -155649063 - AluSg SINE Alu -5 305 1 1739 126 44 41 chr3 62388095 62388389 -155648769 - AluJb SINE Alu -7 305 11 204 388 30 0 chr3 62389141 62389275 -155647883 + L2 LINE L2 2905 3042 -230 2304 164 6 50 chr3 62389715 62389817 -155647341 - MER66B LTR ERV1 0 486 381 2104 97 7 27 chr3 62389817 62390115 -155647043 - AluSq SINE Alu -19 294 3 2304 164 6 50 chr3 62390115 62390493 -155646665 - MER66B LTR ERV1 -105 381 27 478 276 165 4 chr3 62391400 62391628 -155645530 - MIR SINE MIR -2 260 2 2194 91 0 30 chr3 62391982 62392279 -155644879 - AluSx SINE Alu -24 288 1 291 252 15 61 chr3 62392700 62392831 -155644327 + MIR3 SINE MIR 63 187 -21 390 310 7 28 chr3 62393062 62393207 -155643951 + MIR SINE MIR 93 234 -28 2545 82 28 67 chr3 62393555 62393594 -155643564 - THE1C LTR MaLR 0 375 336 2179 111 0 0 chr3 62393594 62393891 -155643267 + AluSx SINE Alu 1 297 -15 2277 100 3 0 chr3 62393891 62394202 -155642956 + AluSx SINE Alu 1 312 0 2545 82 28 67 chr3 62394202 62394551 -155642607 - THE1C LTR MaLR -37 338 1 1873 136 3 17 chr3 62394993 62395294 -155641864 + AluJb SINE Alu 5 301 -11 190 229 257 29 chr3 62395775 62395915 -155641243 - MER5B DNA MER1_type -6 172 1 374 121 15 0 chr3 62395992 62396058 -155641100 + (TTCA)n Simple_repeat Simple_repeat 4 70 0 481 306 65 6 chr3 62396538 62396708 -155640450 - MIR SINE MIR -82 180 1 418 311 81 6 chr3 62397110 62397271 -155639887 - MIR SINE MIR -88 174 2 904 130 0 15 chr3 62398365 62398524 -155638634 - FLAM_C SINE Alu 0 161 5 209 83 28 0 chr3 62399092 62399128 -155638030 + (TA)n Simple_repeat Simple_repeat 1 37 0 1282 217 146 0 chr3 62399780 62400075 -155637083 + MER58B DNA MER1_type 1 338 -3 319 361 10 31 chr3 62400110 62400204 -155636954 + Charlie8 DNA MER1_type 2 96 -245 2039 75 32 21 chr3 62400204 62400517 -155636641 - AluSx SINE Alu 0 316 1 319 361 10 31 chr3 62400517 62400615 -155636543 + Charlie8 DNA MER1_type 96 191 -150 244 322 68 68 chr3 62401202 62401379 -155635779 + L2 LINE L2 3096 3272 0 567 271 154 0 chr3 62401996 62402210 -155634948 - MIR SINE MIR -14 248 2 282 29 0 0 chr3 62402355 62402390 -155634768 + (CAGCC)n Simple_repeat Simple_repeat 4 38 0 201 238 0 0 chr3 62403038 62403080 -155634078 + GA-rich Low_complexity Low_complexity 6 47 0 270 344 11 11 chr3 62403159 62403252 -155633906 - MIR SINE MIR -82 126 34 2373 93 0 3 chr3 62403431 62403741 -155633417 - AluSx SINE Alu -3 309 1 386 309 30 6 chr3 62403769 62403934 -155633224 - L1MC4a LINE L1 -1894 5914 5746 186 43 0 0 chr3 62404568 62404591 -155632567 + (CA)n Simple_repeat Simple_repeat 1 23 0 2367 93 3 0 chr3 62406942 62407254 -155629904 - AluSp SINE Alu 0 313 1 2263 60 0 11 chr3 62407278 62407597 -155629561 - AluY SINE Alu 0 316 1 237 316 200 19 chr3 62407747 62407902 -155629256 - MIR SINE MIR -19 243 61 891 183 37 83 chr3 62408946 62409079 -155628079 - MIR SINE MIR 0 262 143 2114 129 0 0 chr3 62409079 62409374 -155627784 + AluSx SINE Alu 1 295 -17 891 183 37 83 chr3 62409374 62409481 -155627677 - MIR SINE MIR -119 143 33 463 325 52 0 chr3 62409579 62409773 -155627385 + MER63A DNA MER1_type 7 210 0 514 261 50 94 chr3 62411527 62411774 -155625384 - MIR SINE MIR -18 244 21 336 127 0 0 chr3 62411793 62411848 -155625310 + (CA)n Simple_repeat Simple_repeat 1 55 0 476 339 22 59 chr3 62412323 62412645 -155624513 - L2 LINE L2 0 3272 2963 540 324 101 5 chr3 62412650 62412869 -155624289 + L2 LINE L2 3024 3263 -9 2180 105 26 0 chr3 62413411 62413715 -155623443 + AluSq SINE Alu 2 313 0 259 278 251 21 chr3 62413716 62413907 -155623251 + MER102b DNA MER1_type 106 340 -1 196 273 0 47 chr3 62414080 62414165 -155622993 - MIR SINE MIR -60 148 111 727 221 61 6 chr3 62414347 62414510 -155622648 + AluJo SINE Alu 123 294 -18 2262 96 0 3 chr3 62414523 62414824 -155622334 + AluSx SINE Alu 6 305 -7 356 284 84 23 chr3 62416036 62416229 -155620929 + MIR SINE MIR 3 204 -58 196 381 0 19 chr3 62416991 62417096 -155620062 + MIR SINE MIR 81 183 -79 193 241 52 17 chr3 62417384 62417442 -155619716 + MIR SINE MIR 21 80 -182 452 279 44 15 chr3 62417531 62417667 -155619491 - MIR SINE MIR -121 141 2 2059 129 10 0 chr3 62417868 62418177 -155618981 + AluSq SINE Alu 1 312 -1 239 281 16 0 chr3 62418612 62418676 -155618482 - MIR3 SINE MIR -30 178 114 249 263 164 47 chr3 62419811 62420024 -155617134 + L2 LINE L2 2848 3085 -187 258 143 0 0 chr3 62420680 62420729 -155616429 + (CA)n Simple_repeat Simple_repeat 1 49 0 183 273 91 0 chr3 62421286 62421352 -155615806 - MIR SINE MIR -131 131 60 192 316 163 0 chr3 62421929 62422027 -155615131 + MIR3 SINE MIR 95 208 0 366 278 98 13 chr3 62422820 62423054 -155614104 + L2 LINE L2 2821 3074 -198 343 258 65 40 chr3 62423030 62423154 -155614004 - MIR SINE MIR -118 144 18 * 209 303 15 0 chr3 62423812 62423878 -155613280 + MIR SINE MIR 35 101 -107 450 297 53 10 chr3 62423982 62424162 -155612996 - MIR SINE MIR -13 249 63 209 299 117 0 chr3 62426914 62426991 -155610167 + MIR SINE MIR 106 191 -71 2086 129 0 0 chr3 62427048 62427343 -155609815 - AluSg SINE Alu -13 297 3 223 255 0 0 chr3 62427398 62427445 -155609713 - MIR SINE MIR -106 156 110 296 319 71 21 chr3 62428050 62428191 -155608967 - MIR SINE MIR -110 152 5 197 136 0 23 chr3 62428548 62428592 -155608566 + (CA)n Simple_repeat Simple_repeat 1 43 0 220 179 0 0 chr3 62428741 62428780 -155608378 + (CA)n Simple_repeat Simple_repeat 2 40 0 234 0 0 0 chr3 62428926 62428952 -155608206 + (CA)n Simple_repeat Simple_repeat 2 27 0 262 252 7 52 chr3 62429002 62429157 -155608001 + (CA)n Simple_repeat Simple_repeat 2 149 0 224 98 0 24 chr3 62429757 62429798 -155607360 + (TGGGGG)n Simple_repeat Simple_repeat 2 41 0 28 48 0 0 chr3 62430248 62430290 -155606868 + GC_rich Low_complexity Low_complexity 1 42 0 29 28 0 0 chr3 62430342 62430378 -155606780 + GC_rich Low_complexity Low_complexity 1 36 0 16267 67 6 3 chr3 62480483 62482638 -155554520 - L1P LINE L1 -1039 5107 2947 248 286 10 20 chr3 62484465 62484563 -155552595 + L2 LINE L2 2995 3091 -222 359 279 50 36 chr3 62484635 62484775 -155552383 - MER5B DNA MER1_type -1 177 36 1633 93 18 0 chr3 62484923 62485148 -155552010 - L1PA10 LINE L1 -1 6167 5939 259 390 50 0 chr3 62486930 62487071 -155550087 - L2 LINE L2 0 3272 3125 872 320 113 11 chr3 62487490 62487952 -155549206 + L2 LINE L2 820 1328 -1986 247 318 0 0 chr3 62487947 62488035 -155549123 - L2 LINE L2 -3 3269 3182 * 542 330 56 4 chr3 62488108 62488341 -155548817 - L2 LINE L2 -245 3068 2824 189 281 125 8 chr3 62489050 62489178 -155547980 - MIR SINE MIR -71 191 49 2307 87 21 0 chr3 62489371 62489660 -155547498 - AluSx SINE Alu -16 296 2 721 219 38 33 chr3 62490987 62491170 -155545988 - MER58A DNA MER1_type 0 224 41 7813 139 4 17 chr3 62491282 62491399 -155545759 - L1P LINE L1 -3825 2321 2204 2262 82 7 17 chr3 62491399 62491691 -155545467 - AluY SINE Alu -22 289 1 7813 139 4 17 chr3 62491691 62492870 -155544288 - L1P LINE L1 -3942 2204 1042 1735 157 0 0 chr3 62492979 62493241 -155543917 + AluSx SINE Alu 35 296 -16 246 269 37 37 chr3 62493400 62493508 -155543650 + MIR SINE MIR 32 139 -69 2255 101 7 0 chr3 62493570 62493866 -155543292 - AluSx SINE Alu -14 298 1 714 301 129 25 chr3 62494383 62494862 -155542296 - Tigger8 DNA MER2_type -97 569 41 704 174 8 8 chr3 62495297 62495418 -155541740 + AluJb SINE Alu 152 272 -40 180 0 0 0 chr3 62495418 62495438 -155541720 + (CACCC)n Simple_repeat Simple_repeat 2 21 0 547 238 33 7 chr3 62496154 62496305 -155540853 + LTR33 LTR ERVL 26 180 -341 2086 233 18 14 chr3 62496372 62496862 -155540296 - MER74A LTR ERVL -14 544 53 461 240 8 8 chr3 62497692 62497817 -155539341 + MER5A DNA MER1_type 9 133 -56 231 265 98 29 chr3 62498607 62498709 -155538449 - MIR SINE MIR -80 128 20 348 64 0 0 chr3 62499797 62499844 -155537314 + (CA)n Simple_repeat Simple_repeat 2 48 0 181 348 8 42 chr3 62499846 62499964 -155537194 - MIR3 SINE MIR -84 124 11 189 311 16 0 chr3 62500870 62500931 -155536227 + L2 LINE L2 3156 3217 -55 180 0 0 0 chr3 62501684 62501704 -155535454 + (T)n Simple_repeat Simple_repeat 1 20 0 1828 162 3 20 chr3 62503012 62503308 -155533850 - AluJb SINE Alu -21 291 1 24 32 0 0 chr3 62503412 62503443 -155533715 + AT_rich Low_complexity Low_complexity 1 31 0 329 242 21 21 chr3 62503477 62503572 -155533586 + HsTC2 DNA Tc2 7 101 -1797 521 266 109 70 chr3 62503578 62503725 -155533433 - L1MEd LINE L1 -5478 641 501 1915 187 23 0 chr3 62503725 62504078 -155533080 - MER46B DNA MER2_type 0 236 1 521 266 109 70 chr3 62504078 62504242 -155532916 - L1MEd LINE L1 -5618 501 318 2068 139 3 3 chr3 62504412 62504721 -155532437 + AluSx SINE Alu 1 309 -3 702 295 38 8 chr3 62505450 62505687 -155531471 - LTR33A LTR ERVL -17 506 263 439 211 28 56 chr3 62507274 62507416 -155529742 + MIR3 SINE MIR 60 197 -11 1814 71 38 127 chr3 62507536 62507876 -155529282 - L1MA2 LINE L1 -1 6303 5994 314 268 0 49 chr3 62507880 62508003 -155529155 - MIR SINE MIR -48 214 98 236 250 56 0 chr3 62508575 62508647 -155528511 - L3 LINE CR1 -105 1472 1397 1427 180 98 32 chr3 62509111 62509144 -155528014 - L1MD3 LINE L1 -186 7809 7780 1564 182 27 24 chr3 62509144 62509440 -155527718 - AluJb SINE Alu -15 297 1 1427 180 98 32 chr3 62509440 62509784 -155527374 - L1MD3 LINE L1 -215 7780 7407 286 167 0 19 chr3 62509784 62509838 -155527320 - MLT1F1 LTR MaLR -448 119 67 786 280 71 35 chr3 62510149 62510574 -155526584 + L2 LINE L2 2874 3313 0 21 0 0 0 chr3 62510851 62510872 -155526286 + AT_rich Low_complexity Low_complexity 1 21 0 563 294 63 38 chr3 62511639 62512033 -155525125 + L1ME4a LINE L1 5648 6051 -70 468 231 0 0 chr3 62512150 62512241 -155524917 - MER5A DNA MER1_type -98 91 1 183 192 0 77 chr3 62513888 62513940 -155523218 + L2 LINE L2 3173 3220 -93 698 279 5 50 chr3 62514314 62514533 -155522625 + MIR SINE MIR 15 223 -39 739 191 0 8 chr3 62514538 62514664 -155522494 - FLAM_C SINE Alu -17 126 2 285 326 74 15 chr3 62515344 62515479 -155521679 + MER117 DNA MER1_type 5 147 -50 252 208 13 52 chr3 62517512 62517589 -155519569 + MLT1L LTR MaLR 541 614 -1 29 84 0 0 chr3 62517961 62518032 -155519126 + AT_rich Low_complexity Low_complexity 1 71 0 1172 268 29 20 chr3 62518290 62518700 -155518458 - MLT1J LTR MaLR -54 457 1 764 158 9 9 chr3 62519080 62519194 -155517964 - AluSq/x SINE Alu -198 115 2 964 162 66 35 chr3 62519392 62519590 -155517568 + L1PB4 LINE L1 5953 6156 0 233 327 120 45 chr3 62519632 62519941 -155517217 + L3 LINE CR1 889 1220 -357 234 0 0 0 chr3 62520079 62520105 -155517053 + (TC)n Simple_repeat Simple_repeat 1 26 0 2320 72 24 3 chr3 62521797 62522089 -155515069 - AluY SINE Alu -13 298 1 307 324 55 51 chr3 62522112 62522405 -155514753 + L1M4 LINE L1 3215 3508 -2638 434 100 100 0 chr3 62522670 62522740 -155514418 - MADE1 DNA Mariner 0 80 4 1717 188 60 0 chr3 62523022 62523341 -155513817 - MER7A DNA MER2_type -9 337 2 2324 104 0 0 chr3 62523515 62523814 -155513344 + AluSg SINE Alu 1 299 -11 25 0 0 0 chr3 62523832 62523857 -155513301 + AT_rich Low_complexity Low_complexity 1 25 0 777 233 90 49 chr3 62524131 62524419 -155512739 - AluJo SINE Alu -1 301 2 23 68 0 0 chr3 62525175 62525219 -155511939 + AT_rich Low_complexity Low_complexity 1 44 0 1777 177 22 126 chr3 62525725 62526313 -155510845 - LTR8A LTR ERV1 -182 545 1 2501 54 0 0 chr3 62526315 62526610 -155510548 - AluY SINE Alu -16 295 1 748 191 0 0 chr3 62526659 62526774 -155510384 - FLAM_A SINE Alu -18 115 1 2502 82 3 0 chr3 62526777 62527083 -155510075 - AluSp SINE Alu -6 307 1 35 0 0 0 chr3 62527088 62527123 -155510035 + AT_rich Low_complexity Low_complexity 1 35 0 404 353 20 0 chr3 62527306 62527456 -155509702 + L2 LINE L2 2749 2901 -413 1398 151 84 27 chr3 62527465 62527887 -155509271 - LTR54 LTR ERV1 -3 507 1 316 296 60 81 chr3 62527887 62528129 -155509029 + L2 LINE L2 2908 3234 -38 302 311 19 10 chr3 62528381 62528484 -155508674 + CT-rich Low_complexity Low_complexity 2 105 0 2306 93 0 0 chr3 62528487 62528788 -155508370 - AluY SINE Alu -10 301 1 822 289 79 37 chr3 62529656 62530061 -155507097 + MLT1J2 LTR MaLR 1 422 -28 1106 163 0 6 chr3 62530718 62530884 -155506274 - FAM SINE Alu -9 166 2 2335 106 3 0 chr3 62530929 62531240 -155505918 - AluSx SINE Alu 0 312 1 2254 104 0 3 chr3 62533247 62533545 -155503613 - AluSc SINE Alu -12 297 1 27 29 0 0 chr3 62533633 62533667 -155503491 + AT_rich Low_complexity Low_complexity 1 34 0 1682 217 39 25 chr3 62533956 62534160 -155502998 - MLT1A1 LTR MaLR 0 365 152 2288 121 0 0 chr3 62534160 62534473 -155502685 - AluSq SINE Alu 0 313 1 1682 217 39 25 chr3 62534473 62534628 -155502530 - MLT1A1 LTR MaLR -213 152 1 243 0 0 0 chr3 62534855 62534882 -155502276 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1715 130 22 18 chr3 62534886 62535162 -155501996 - AluJb SINE Alu -31 281 5 1688 157 42 0 chr3 62535224 62535511 -155501647 - AluSx SINE Alu -13 299 1 1615 174 10 17 chr3 62535765 62536059 -155501099 + AluJo SINE Alu 16 307 -5 316 314 134 6 chr3 62536074 62536246 -155500912 - L1MDa LINE L1 -3913 2627 2434 258 295 19 19 chr3 62536681 62536786 -155500372 - L1M2 LINE L1 -4378 2471 2367 186 71 0 0 chr3 62536847 62536875 -155500283 + (TG)n Simple_repeat Simple_repeat 1 28 0 2347 99 0 3 chr3 62536899 62537211 -155499947 - AluSx SINE Alu -1 311 1 703 305 90 9 chr3 62537225 62537559 -155499599 - L1MDa LINE L1 -4864 1666 1306 1702 137 101 4 chr3 62537590 62537868 -155499290 - AluJb SINE Alu -6 306 2 2236 109 0 7 chr3 62537872 62538175 -155498983 - AluSq SINE Alu -12 301 1 914 199 0 0 chr3 62539339 62539500 -155497658 + FRAM SINE Alu 7 167 -9 2448 87 0 0 chr3 62539717 62540029 -155497129 - AluSx SINE Alu 0 312 1 1651 178 0 23 chr3 62540029 62540331 -155496827 - AluJo SINE Alu -16 296 1 43885 30 22 2 chr3 62540610 62546640 -155490518 - L1PA2 LINE L1 0 6155 1 216 67 0 0 chr3 62547570 62547600 -155489558 + (CAA)n Simple_repeat Simple_repeat 2 31 0 2252 103 7 0 chr3 62547649 62547951 -155489207 + AluSc SINE Alu 1 304 -5 2069 143 0 0 chr3 62548525 62548818 -155488340 - AluSq SINE Alu -20 293 1 2080 117 0 0 chr3 62549379 62549662 -155487496 - AluSx SINE Alu -19 293 11 822 158 98 37 chr3 62549916 62550080 -155487078 + AluJo SINE Alu 113 286 -26 286 161 39 13 chr3 62550080 62550092 -155487066 + (TA)n Simple_repeat Simple_repeat 2 12 -148 2075 130 3 7 chr3 62550092 62550400 -155486758 + AluSx SINE Alu 1 307 -5 286 161 39 13 chr3 62550400 62550542 -155486616 + (TA)n Simple_repeat Simple_repeat 12 160 0 200 238 159 0 chr3 62550895 62550958 -155486200 + L2 LINE L2 1588 1660 -1654 2032 115 10 7 chr3 62551383 62551678 -155485480 - AluSx SINE Alu -16 296 1 1392 246 137 10 chr3 62551695 62552207 -155484951 + L2 LINE L2 2126 2702 -612 798 163 8 0 chr3 62552251 62552374 -155484784 - FLAM_C SINE Alu -12 131 8 240 128 0 0 chr3 62552374 62552413 -155484745 - L1PA14 LINE L1 -8 6153 6115 1934 104 25 4 chr3 62552414 62552694 -155484464 - AluY SINE Alu -2 309 24 1829 227 0 80 chr3 62552694 62553169 -155483989 - L1PA7 LINE L1 -197 5957 5521 1096 253 55 83 chr3 62553172 62553834 -155483324 + L2 LINE L2 2687 3313 0 183 239 0 0 chr3 62554391 62554437 -155482721 + CT-rich Low_complexity Low_complexity 3 48 0 390 307 50 0 chr3 62554440 62554541 -155482617 - MIR SINE MIR -77 131 26 2131 122 0 29 chr3 62554700 62555012 -155482146 + AluJb SINE Alu 1 303 -9 4571 156 38 54 chr3 62555346 62555522 -155481636 + L1MB7 LINE L1 5023 5200 -984 1742 139 43 46 chr3 62555522 62555824 -155481334 + AluJb SINE Alu 3 303 -9 4571 156 38 54 chr3 62555824 62556837 -155480321 + L1MB7 LINE L1 5200 6183 -1 1959 141 0 17 chr3 62556894 62557191 -155479967 - AluJo SINE Alu -20 292 1 867 206 60 44 chr3 62557417 62557665 -155479493 + L1ME3A LINE L1 5914 6165 -5 927 256 94 32 chr3 62558124 62558383 -155478775 - MER46C DNA MER2_type 0 338 56 1899 162 21 0 chr3 62558383 62558667 -155478491 + AluJb SINE Alu 1 290 -22 927 256 94 32 chr3 62558667 62558715 -155478443 - MER46C DNA MER2_type -282 56 12 2308 103 0 0 chr3 62559523 62559824 -155477334 - AluSx SINE Alu -11 301 1 2462 121 129 5 chr3 62560027 62560407 -155476751 - MSTA LTR MaLR 0 428 2 2071 136 3 0 chr3 62560589 62560883 -155476275 - AluSx SINE Alu -16 296 2 615 176 90 101 chr3 62560926 62561114 -155476044 - L1ME2 LINE L1 -2 6162 5977 188 235 47 24 chr3 62561148 62561233 -155475925 - L2 LINE L2 -290 2982 2896 1332 142 18 9 chr3 62561507 62561732 -155475426 - AluSq SINE Alu -85 228 2 615 176 90 101 chr3 62561775 62561963 -155475195 - L1ME2 LINE L1 -2 6162 5977 188 235 47 24 chr3 62561997 62562082 -155475076 - L2 LINE L2 -290 2982 2896 21 0 0 0 chr3 62562279 62562300 -155474858 + AT_rich Low_complexity Low_complexity 1 21 0 906 189 0 7 chr3 62562300 62562453 -155474705 - FRAM SINE Alu -25 151 1 325 274 117 106 chr3 62563425 62563782 -155473376 + HAL1b LINE L1 283 635 -949 2007 121 3 60 chr3 62563782 62564113 -155473045 + AluJb SINE Alu 1 312 0 325 274 117 106 chr3 62564113 62564732 -155472426 + HAL1b LINE L1 635 1059 -525 807 233 5 32 chr3 62564913 62565102 -155472056 + L1MC5 LINE L1 6668 6851 -1110 828 157 8 0 chr3 62565123 62565244 -155471914 - FLAM_C SINE Alu -20 123 2 21 43 0 22 chr3 62565340 62565372 -155471786 + AT_rich Low_complexity Low_complexity 1 33 -12 2159 126 7 0 chr3 62565372 62565681 -155471477 - AluSq SINE Alu -2 311 1 21 43 0 22 chr3 62565681 62565694 -155471464 + AT_rich Low_complexity Low_complexity 33 45 0 1373 120 88 113 chr3 62565694 62565968 -155471190 - AluSx SINE Alu -45 267 1 39045 84 11 7 chr3 62566005 62572130 -155465028 + L1PA6 LINE L1 11 6151 -3 12916 53 3 0 chr3 62572271 62574614 -155462544 + L1PA5 LINE L1 3832 6179 0 2196 104 21 0 chr3 62574629 62574918 -155462240 + AluSx SINE Alu 1 295 -17 2158 235 96 74 chr3 62574918 62575380 -155461778 + HAL1 LINE L1 979 1430 -1077 1862 159 7 7 chr3 62575380 62575676 -155461482 + AluSx SINE Alu 1 296 -16 2158 235 96 74 chr3 62575676 62576145 -155461013 + HAL1 LINE L1 1430 1930 -577 31 0 0 0 chr3 62576217 62576248 -155460910 + AT_rich Low_complexity Low_complexity 1 31 0 1178 212 69 80 chr3 62576608 62576723 -155460435 + MER69 DNA AcHobo 10 125 -1101 267 54 0 0 chr3 62576723 62576760 -155460398 + (CA)n Simple_repeat Simple_repeat 2 38 0 1178 212 69 80 chr3 62576760 62576993 -155460165 + MER69 DNA AcHobo 125 354 -872 2109 147 3 10 chr3 62577017 62577331 -155459827 - AluJb SINE Alu 0 312 1 2288 59 0 0 chr3 62577343 62577614 -155459544 - AluY SINE Alu -2 309 39 1695 103 31 0 chr3 62577641 62577864 -155459294 - MER30 DNA MER1_type 0 230 1 897 188 11 11 chr3 62577873 62578059 -155459099 + MER69 DNA AcHobo 2341 2526 0 2260 220 69 68 chr3 62578096 62578877 -155458281 + MER20B DNA MER1_type 3 784 0 185 237 26 0 chr3 62578881 62578919 -155458239 - MIR3 SINE MIR -52 156 118 1044 150 0 0 chr3 62579094 62579247 -155457911 + FRAM SINE Alu 11 163 -13 2240 120 7 0 chr3 62579303 62579604 -155457554 - AluSx SINE Alu -9 303 1 567 267 55 76 chr3 62580673 62580909 -155456249 - L2 LINE L2 -50 3222 2992 650 109 11 0 chr3 62581062 62581154 -155456004 + L1PB2 LINE L1 6056 6148 -3 2023 154 7 0 chr3 62581165 62581470 -155455688 + AluSq SINE Alu 1 307 -6 199 267 47 58 chr3 62581525 62581611 -155455547 + L2 LINE L2 3229 3313 0 279 0 0 0 chr3 62582019 62582050 -155455108 + (TC)n Simple_repeat Simple_repeat 2 32 0 1925 137 3 10 chr3 62582050 62582337 -155454821 - AluJb SINE Alu -27 285 1 213 167 24 0 chr3 62582837 62582879 -155454279 - L2 LINE L2 -6 3266 3224 237 125 0 25 chr3 62583166 62583206 -155453952 + Alu SINE Alu 199 237 -65 245 254 32 0 chr3 62583255 62583318 -155453840 + MIR3 SINE MIR 113 177 -31 556 206 65 38 chr3 62583768 62583952 -155453206 + L2 LINE L2 3124 3312 -1 547 216 0 0 chr3 62586085 62586182 -155450976 + FLAM_C SINE Alu 45 141 -2 3389 155 23 23 chr3 62586195 62586516 -155450642 + L1MB7 LINE L1 5566 5889 -295 2133 130 0 3 chr3 62586516 62586815 -155450343 + AluSx SINE Alu 7 304 -8 3389 155 23 23 chr3 62586815 62587093 -155450065 + L1MB7 LINE L1 5888 6165 -19 904 279 39 0 chr3 62587268 62587497 -155449661 + LTR16B LTR ERVL 1 238 -226 466 191 24 0 chr3 62587497 62587581 -155449577 + MERVL LTR ERVL 1294 1379 -3617 1687 291 77 64 chr3 62587654 62587734 -155449424 + MERVL LTR ERVL 1585 1663 -3333 210 71 0 0 chr3 62587734 62587762 -155449396 + (CA)n Simple_repeat Simple_repeat 2 29 0 1687 291 77 64 chr3 62587762 62587792 -155449366 + MERVL LTR ERVL 1663 1691 -3305 234 0 0 0 chr3 62587792 62587818 -155449340 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 1687 291 77 64 chr3 62587818 62588670 -155448488 + MERVL LTR ERVL 1691 2560 -2436 2391 284 63 92 chr3 62588732 62589795 -155447363 + MERVL LTR ERVL 2827 3555 -1441 2553 43 0 7 chr3 62589795 62590094 -155447064 + AluY SINE Alu 1 297 -14 2391 284 63 92 chr3 62590094 62590149 -155447009 + MERVL LTR ERVL 3555 3610 -1386 473 240 29 29 chr3 62590229 62590400 -155446758 + MERVL LTR ERVL 5161 5331 -154 1066 234 117 8 chr3 62590521 62590869 -155446289 + LTR16B LTR ERVL 2 455 -9 34 0 0 0 chr3 62591667 62591701 -155445457 + AT_rich Low_complexity Low_complexity 1 34 0 230 271 68 0 chr3 62591780 62591839 -155445319 - MIR SINE MIR -59 149 87 1457 249 74 13 chr3 62592061 62592438 -155444720 + LTR16A LTR ERVL 16 415 -35 3666 261 83 67 chr3 62592455 62593959 -155443199 + HERV16 LTR ERVL 13 1541 -3455 816 164 0 0 chr3 62593970 62594092 -155443066 + FRAM SINE Alu 54 175 -1 269 268 36 27 chr3 62594118 62594230 -155442928 + HERV16 LTR ERVL 1608 1720 -3276 316 273 13 0 chr3 62594230 62594307 -155442851 + LTR16A LTR ERVL 146 223 -227 4267 288 73 26 chr3 62594445 62595889 -155441269 + HERV16 LTR ERVL 1735 3010 -1986 1559 184 71 0 chr3 62595889 62596190 -155440968 + AluJb SINE Alu 2 321 0 4267 288 73 26 chr3 62596190 62596651 -155440507 + HERV16 LTR ERVL 3010 3448 -1548 478 297 113 22 chr3 62596931 62597116 -155440042 + HERV16 LTR ERVL 4145 4346 -1418 475 342 13 0 chr3 62597185 62597340 -155439818 + HERV16 LTR ERVL 4808 4964 -800 2411 85 0 7 chr3 62597661 62597968 -155439190 - AluSx SINE Alu -5 307 3 783 221 72 152 chr3 62599188 62599225 -155437933 + L1M4 LINE L1 4624 4662 -1484 2105 108 4 0 chr3 62599225 62599504 -155437654 + AluSx SINE Alu 1 280 -32 218 29 59 0 chr3 62599508 62599542 -155437616 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 783 221 72 152 chr3 62599542 62599753 -155437405 + L1M4 LINE L1 4665 4891 -1255 2023 158 0 0 chr3 62599753 62600064 -155437094 + AluJb SINE Alu 2 312 0 783 221 72 152 chr3 62600064 62600390 -155436768 + L1M4 LINE L1 4891 5135 -1011 1476 207 14 14 chr3 62600390 62600685 -155436473 + AluJo SINE Alu 1 295 -17 783 221 72 152 chr3 62600685 62600842 -155436316 + L1M4 LINE L1 5135 5303 -843 507 242 83 58 chr3 62601126 62601278 -155435880 + L1ME3A LINE L1 1244 1391 -5243 1759 179 7 7 chr3 62601278 62601586 -155435572 - AluJo SINE Alu -3 309 2 507 242 83 58 chr3 62601586 62601760 -155435398 + L1ME3A LINE L1 1391 1578 -5056 204 158 0 26 chr3 62601800 62601838 -155435320 + GA-rich Low_complexity Low_complexity 2 38 0 1928 237 44 79 chr3 62601838 62602836 -155434322 + L1ME3A LINE L1 1444 2558 -4154 597 302 42 45 chr3 62602942 62603004 -155434154 + L1ME3A LINE L1 5835 5896 -764 1516 176 52 21 chr3 62603004 62603294 -155433864 - AluJb SINE Alu -13 299 1 597 302 42 45 chr3 62603294 62603542 -155433616 + L1ME3A LINE L1 5896 6144 -516 1104 247 101 55 chr3 62603546 62603716 -155433442 - LTR33A LTR ERVL 0 523 362 819 198 231 6 chr3 62603716 62603898 -155433260 + MER58A DNA MER1_type 1 223 -1 1104 247 101 55 chr3 62603898 62604221 -155432937 - LTR33A LTR ERVL -161 362 7 614 211 51 127 chr3 62604240 62604349 -155432809 + L1ME3A LINE L1 6144 6260 -408 1982 149 0 3 chr3 62604349 62604644 -155432514 + AluJo SINE Alu 1 294 -18 614 211 51 127 chr3 62604644 62604699 -155432459 + L1ME3A LINE L1 6260 6318 -350 2035 97 61 0 chr3 62604699 62604977 -155432181 + AluSp SINE Alu 1 295 -18 614 211 51 127 chr3 62604977 62605142 -155432016 + L1ME3A LINE L1 6318 6449 -219 1843 155 6 31 chr3 62605657 62605974 -155431184 - AluJo SINE Alu -3 309 1 243 285 106 33 chr3 62606498 62606649 -155430509 + MIR SINE MIR 45 206 -56 2373 100 0 0 chr3 62607121 62607421 -155429737 + AluSx SINE Alu 1 300 -12 3142 162 38 73 chr3 62608205 62608469 -155428689 - L1MB3 LINE L1 0 6183 5911 1870 137 49 14 chr3 62608469 62608753 -155428405 + AluJb SINE Alu 1 294 -18 3142 162 38 73 chr3 62608753 62609377 -155427781 - L1MB3 LINE L1 -272 5911 5194 687 227 31 0 chr3 62609377 62609505 -155427653 - FLAM_A SINE Alu -1 132 1 3142 162 38 73 chr3 62609505 62609779 -155427379 - L1MB3 LINE L1 -989 5194 4912 * 4610 191 86 61 chr3 62609777 62610259 -155426899 - L1MDb LINE L1 -3641 2899 2430 1824 166 29 23 chr3 62610259 62610567 -155426591 - AluJo SINE Alu -2 310 1 4610 191 86 61 chr3 62610567 62610962 -155426196 - L1MDb LINE L1 -4110 2430 2046 533 16 0 0 chr3 62610962 62611024 -155426134 - L1PA6 LINE L1 -1 6153 6092 4610 191 86 61 chr3 62611024 62611257 -155425901 - L1MDb LINE L1 -4494 2046 1820 1609 62 5 0 chr3 62611257 62611450 -155425708 + L1PA8 LINE L1 5973 6166 -6 4610 191 86 61 chr3 62611450 62611738 -155425420 - L1MDb LINE L1 -4720 1820 1541 186 43 0 0 chr3 62611738 62611761 -155425397 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2127 97 14 0 chr3 62611764 62612042 -155425116 - AluSx SINE Alu -30 282 1 4610 191 86 61 chr3 62612042 62612671 -155424487 - L1MDb LINE L1 -5000 1540 836 1104 234 29 35 chr3 62612944 62613271 -155423887 - L1MDb LINE L1 -6196 344 34 716 139 0 0 chr3 62613343 62613444 -155423714 + AluJ/FLAM SINE Alu 1 101 -211 205 299 45 15 chr3 62614284 62614351 -155422807 - MIR SINE MIR -58 150 82 1003 209 71 43 chr3 62614573 62614827 -155422331 - MIR SINE MIR 0 262 2 1841 143 11 11 chr3 62614906 62615193 -155421965 + AluJo SINE Alu 6 292 -20 402 100 0 0 chr3 62615193 62615253 -155421905 + (GA)n Simple_repeat Simple_repeat 1 60 0 2275 111 0 3 chr3 62615368 62615666 -155421492 + AluSc SINE Alu 1 297 -12 473 194 43 36 chr3 62615666 62615795 -155421363 + L1ME2 LINE L1 6022 6154 -10 1795 149 8 0 chr3 62615816 62616084 -155421074 + AluJo SINE Alu 11 280 -32 212 0 36 0 chr3 62616084 62616112 -155421046 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 204 135 0 0 chr3 62616212 62616249 -155420909 + (TGGA)n Simple_repeat Simple_repeat 3 39 0 249 256 23 23 chr3 62616321 62616407 -155420751 - L1ME3A LINE L1 -98 6072 5987 1149 234 72 63 chr3 62616516 62616947 -155420211 - L1MC5 LINE L1 -476 7485 7051 891 18 0 0 chr3 62616946 62617055 -155420103 - L1PA5 LINE L1 -1014 5132 5024 * 7679 50 3 2 chr3 62617055 62618067 -155419091 + L1PA5 LINE L1 5141 6153 -1 471 301 55 40 chr3 62618638 62618984 -155418174 - L1ME4a LINE L1 -67 6054 5704 1298 122 5 20 chr3 62619117 62619314 -155417844 + AluSg/x SINE Alu 98 291 -19 778 177 16 0 chr3 62619319 62619443 -155417715 + FLAM_A SINE Alu 4 129 -4 1526 125 13 5 chr3 62619563 62619787 -155417371 - MER4E LTR ERV1 0 779 554 725 138 0 0 chr3 62619819 62619928 -155417230 - FLAM_C SINE Alu 0 143 35 245 313 81 0 chr3 62620095 62620194 -155416964 - LTR43 LTR ERV1 -243 359 253 289 125 0 0 chr3 62620462 62620502 -155416656 - FLAM_C SINE Alu -91 40 1 243 285 49 73 chr3 62620746 62620869 -155416289 - L2 LINE L2 -182 3090 2971 299 288 51 40 chr3 62620896 62621047 -155416111 - MIR SINE MIR -61 147 16 2277 82 7 0 chr3 62621365 62621676 -155415482 + AluY SINE Alu 1 313 0 353 274 68 51 chr3 62621852 62621969 -155415189 + L2 LINE L2 3151 3269 -3 445 94 0 153 chr3 62622089 62622174 -155414984 - LTR8A LTR ERV1 0 727 656 2250 105 0 0 chr3 62622175 62622461 -155414697 - AluSg SINE Alu -13 297 12 777 261 67 98 chr3 62622506 62622912 -155414246 - L1MEd LINE L1 -5295 824 432 1983 110 7 7 chr3 62622912 62623241 -155413917 - AluSx SINE Alu 0 329 1 21 0 0 0 chr3 62623251 62623272 -155413886 + AT_rich Low_complexity Low_complexity 1 21 0 464 224 184 39 chr3 62623870 62624049 -155413109 - MER3 DNA MER1_type -3 206 2 350 315 7 27 chr3 62624085 62624231 -155412927 + MIR SINE MIR 5 147 -115 734 173 71 16 chr3 62624381 62624496 -155412662 + AluJo SINE Alu 2 126 -186 195 42 0 0 chr3 62624496 62624520 -155412638 + (CCA)n Simple_repeat Simple_repeat 2 25 0 734 173 71 16 chr3 62624520 62624531 -155412627 + AluJo SINE Alu 126 135 -177 2581 60 0 0 chr3 62624650 62624952 -155412206 + AluY SINE Alu 1 302 -9 1733 158 3 17 chr3 62625998 62626296 -155410862 - AluJb SINE Alu -18 294 1 2287 85 3 3 chr3 62627243 62627537 -155409621 + AluY SINE Alu 1 294 -17 1797 99 118 15 chr3 62627774 62628046 -155409112 - AluSx SINE Alu -12 300 1 672 271 173 11 chr3 62628695 62629156 -155408002 + L2 LINE L2 2702 3252 -61 284 320 55 62 chr3 62629428 62629556 -155407602 - MIR SINE MIR -66 142 16 2471 71 0 0 chr3 62629895 62630192 -155406966 - AluY SINE Alu -14 297 1 912 126 0 21 chr3 62634329 62634472 -155402686 - LTR23 LTR ERV1 0 437 298 2350 83 0 0 chr3 62634473 62634774 -155402384 - AluSq SINE Alu -12 301 1 1244 94 11 6 chr3 62634775 62634955 -155402203 - AluSq SINE Alu -12 301 121 989 104 0 15 chr3 62634956 62635091 -155402067 - AluSg/x SINE Alu -16 296 164 1370 249 33 15 chr3 62635192 62635521 -155401637 - MLT2F LTR ERVL -328 335 1 2180 104 9 31 chr3 62635875 62636193 -155400965 - AluSx SINE Alu -1 311 1 260 0 0 54 chr3 62636613 62636650 -155400508 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1813 137 3 70 chr3 62636840 62637169 -155399989 - AluSx SINE Alu -5 307 1 494 332 23 9 chr3 62637205 62637419 -155399739 + LTR50 LTR ERVL 389 605 -190 316 276 97 32 chr3 62637392 62637577 -155399581 + LTR33A LTR ERVL 327 523 0 * 4141 189 14 43 chr3 62637690 62638618 -155398540 - L1 LINE L1 -1487 4659 3759 1941 136 10 10 chr3 62638618 62638913 -155398245 - AluSx SINE Alu -17 295 1 4141 189 14 43 chr3 62638913 62638955 -155398203 - L1 LINE L1 -2387 3759 3717 3979 242 62 26 chr3 62639060 62639690 -155397468 + L1PA15 LINE L1 3689 4295 -1870 2287 98 3 0 chr3 62639690 62639985 -155397173 + AluSp SINE Alu 1 296 -17 3979 242 62 26 chr3 62639985 62641472 -155395686 + L1PA15 LINE L1 4295 5887 -278 8045 79 3 1 chr3 62641572 62642635 -155394523 + L1P LINE L1 3331 4395 -1751 7582 101 9 3 chr3 62642736 62643837 -155393321 + L1P LINE L1 2279 3386 -2760 2154 238 58 86 chr3 62644026 62645469 -155391689 + L1MC5 LINE L1 6508 7910 -51 872 122 0 101 chr3 62645770 62645918 -155391240 + FLAM_C SINE Alu 1 133 0 3168 128 99 10 chr3 62647482 62647966 -155389192 + MER1A DNA MER1_type 1 527 0 2224 128 0 3 chr3 62648539 62648852 -155388306 + AluSx SINE Alu 1 312 0 2409 92 10 0 chr3 62648872 62649178 -155387980 + AluSq SINE Alu 1 309 -4 26485 85 2 9 chr3 62649445 62653040 -155384118 - L1P LINE L1 -2574 3572 4 201 74 0 0 chr3 62653111 62653138 -155384020 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 313 234 16 0 chr3 62653203 62653267 -155383891 - HAL1 LINE L1 -1644 863 799 654 197 118 17 chr3 62653274 62653452 -155383706 + L2 LINE L2 2530 2725 -589 2116 125 3 0 chr3 62653452 62653747 -155383411 - AluSx SINE Alu -16 296 1 308 294 7 84 chr3 62653773 62653916 -155383242 - HAL1 LINE L1 -1719 788 657 306 302 48 16 chr3 62653971 62654097 -155383061 - HAL1 LINE L1 -1850 657 528 1049 162 0 17 chr3 62654284 62654463 -155382695 - AluJo SINE Alu -11 301 126 180 0 0 0 chr3 62654662 62654682 -155382476 + (A)n Simple_repeat Simple_repeat 1 20 0 270 263 42 11 chr3 62654882 62654977 -155382181 + L1ME LINE L1 5607 5704 -417 2519 57 0 0 chr3 62655055 62655351 -155381807 - AluY SINE Alu -15 296 1 1783 181 30 0 chr3 62656986 62657289 -155379869 - AluJb SINE Alu 0 312 1 1616 117 36 0 chr3 62657308 62657530 -155379628 - MER30 DNA MER1_type 0 230 1 922 147 7 7 chr3 62657951 62658094 -155379064 - FRAM SINE Alu -30 146 4 301 261 123 31 chr3 62658384 62658514 -155378644 - L2 LINE L2 -13 3300 3159 3704 334 63 21 chr3 62659225 62660153 -155377005 - ERVL LTR ERVL -802 4962 4075 2381 104 0 0 chr3 62660153 62660462 -155376696 - AluSx SINE Alu -3 309 1 3704 334 63 21 chr3 62660462 62661426 -155375732 - ERVL LTR ERVL -1689 4075 2990 461 258 17 8 chr3 62661426 62661546 -155375612 - L2 LINE L2 -998 2316 2196 1650 249 19 78 chr3 62661548 62662083 -155375075 - MLT1J LTR MaLR 0 511 9 1450 296 120 58 chr3 62662085 62663468 -155373690 - L2 LINE L2 -1109 2205 737 1513 160 55 0 chr3 62663744 62663982 -155373176 - AluSx SINE Alu -18 294 44 7417 39 2 0 chr3 62664810 62666075 -155371083 - L1PA5 LINE L1 -5 6149 4884 312 350 50 8 chr3 62666203 62666323 -155370835 + MIR3 SINE MIR 37 161 -47 1723 164 44 0 chr3 62666869 62667144 -155370014 - AluJb SINE Alu -25 287 1 316 280 91 14 chr3 62667453 62667596 -155369562 + MIR SINE MIR 58 211 -51 254 279 122 53 chr3 62668202 62668318 -155368840 - HAL1 LINE L1 -5 2502 2395 693 130 139 0 chr3 62668318 62668433 -155368725 - FLAM_C SINE Alu -2 131 1 254 279 122 53 chr3 62668433 62668710 -155368448 - HAL1 LINE L1 -112 2395 2082 938 237 148 39 chr3 62668728 62669208 -155367950 - MLT1G LTR MaLR 0 555 1 2224 246 60 32 chr3 62669213 62669930 -155367228 - HAL1 LINE L1 -357 2150 1414 2917 100 39 7 chr3 62669988 62670338 -155366820 - L1PB1 LINE L1 -4 6147 5779 237 33 0 0 chr3 62670338 62670368 -155366790 + (TA)n Simple_repeat Simple_repeat 2 31 0 2917 100 39 7 chr3 62670368 62670456 -155366702 - L1PB1 LINE L1 -372 5779 5695 412 262 71 21 chr3 62670606 62670747 -155366411 - MER91A DNA MER1_type -36 160 13 1371 278 127 47 chr3 62670764 62671741 -155365417 - HAL1 LINE L1 -1147 1360 306 254 61 0 0 chr3 62671896 62671929 -155365229 - MER3 DNA MER1_type -160 49 17 636 188 94 39 chr3 62671944 62672125 -155365033 - L1ME2 LINE L1 -166 6067 5877 2038 175 27 22 chr3 62672279 62672326 -155364832 - L1ME2 LINE L1 -346 5887 5842 1989 135 0 23 chr3 62672326 62672630 -155364528 - AluJb SINE Alu -15 297 1 2038 175 27 22 chr3 62672630 62672993 -155364165 - L1ME2 LINE L1 -391 5842 5475 1203 231 66 65 chr3 62672989 62673233 -155363925 - L1ME2 LINE L1 -2160 4055 3813 * 1512 188 13 40 chr3 62673233 62673371 -155363787 + AluJo SINE Alu 1 141 -171 2606 71 3 0 chr3 62673371 62673679 -155363479 + AluY SINE Alu 1 309 -2 1512 188 13 40 chr3 62673679 62673838 -155363320 + AluJo SINE Alu 141 290 -22 1203 231 66 65 chr3 62673838 62674105 -155363053 - L1ME2 LINE L1 -2402 3813 3543 * 38870 81 12 8 chr3 62674093 62680204 -155356954 - L1PA6 LINE L1 -2 6152 11 1420 243 77 12 chr3 62680219 62680815 -155356343 - L1ME2 LINE L1 -2660 3555 2921 542 187 24 16 chr3 62681277 62681400 -155355758 - L1ME2 LINE L1 -3237 2978 2855 323 136 30 30 chr3 62681444 62681510 -155355648 - AluJo SINE Alu 0 302 237 1007 201 39 0 chr3 62681510 62681689 -155355469 - AluJo SINE Alu -126 186 1 2184 214 34 14 chr3 62681690 62682385 -155354773 - L1ME2 LINE L1 -3486 2729 2048 7115 50 4 0 chr3 62682386 62683646 -155353512 - L1PA7 LINE L1 -2 6152 4881 2009 147 3 28 chr3 62683929 62684249 -155352909 + AluJo SINE Alu 1 312 0 211 320 0 64 chr3 62684745 62684870 -155352288 + MIR SINE MIR 57 173 -89 2061 111 7 4 chr3 62685892 62686202 -155350956 + AluSx SINE Alu 1 311 0 225 382 13 57 chr3 62686207 62686364 -155350794 + MIR3 SINE MIR 44 193 -15 261 0 0 0 chr3 62686464 62686493 -155350665 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 349 271 73 57 chr3 62686918 62686991 -155350167 + MER5A DNA MER1_type 4 74 -115 2361 109 0 0 chr3 62686991 62687302 -155349856 + AluSx SINE Alu 1 311 -1 2477 62 0 13 chr3 62687311 62687618 -155349540 + AluY SINE Alu 1 303 -8 349 271 73 57 chr3 62687618 62687711 -155349447 + MER5A DNA MER1_type 81 183 -6 320 277 107 18 chr3 62687745 62687857 -155349301 + MER5B DNA MER1_type 57 178 0 1786 167 0 17 chr3 62688822 62689121 -155348037 + AluJo SINE Alu 1 294 -18 924 159 40 11 chr3 62690236 62690412 -155346746 - MER5A DNA MER1_type -5 184 4 1610 169 0 68 chr3 62690435 62690742 -155346416 - AluJo SINE Alu -26 286 1 571 245 20 7 chr3 62692956 62693103 -155344055 - MIR SINE MIR -111 151 3 208 239 134 0 chr3 62693103 62693165 -155343993 - MIR3 SINE MIR -15 193 123 327 297 118 30 chr3 62693249 62693512 -155343646 + L3b LINE CR1 1106 1391 -192 247 205 0 0 chr3 62693843 62693882 -155343276 + Charlie1a DNA MER1_type 1 39 -1416 328 207 33 91 chr3 62693884 62694005 -155343153 + MER53 DNA DNA 2 115 -74 240 69 0 0 chr3 62693995 62694024 -155343134 + MER53 DNA DNA 161 189 0 * 6302 160 77 11 chr3 62694026 62695245 -155341913 + Charlie1a DNA MER1_type 31 1329 -126 641 196 11 138 chr3 62695247 62695436 -155341722 + FRAM SINE Alu 1 165 -1 677 267 5 30 chr3 62696869 62696953 -155340205 + MIR SINE MIR 63 148 -114 1919 138 41 0 chr3 62696953 62697243 -155339915 - AluSx SINE Alu -10 302 1 677 267 5 30 chr3 62697243 62697360 -155339798 + MIR SINE MIR 148 259 -3 707 184 25 44 chr3 62697547 62697705 -155339453 + FRAM SINE Alu 11 165 -11 1594 137 39 102 chr3 62698057 62698421 -155338737 - L1MC2 LINE L1 -11 6333 5993 2158 102 0 26 chr3 62698571 62698874 -155338284 + AluSx SINE Alu 1 295 -17 339 203 37 37 chr3 62700586 62700749 -155336409 + (CGCGG)n Simple_repeat Simple_repeat 2 164 0 206 212 30 30 chr3 62700813 62700912 -155336246 + (CGGG)n Simple_repeat Simple_repeat 3 101 0 22 88 0 0 chr3 62700980 62701037 -155336121 + AT_rich Low_complexity Low_complexity 1 57 0 298 185 0 0 chr3 62701211 62701265 -155335893 + L2 LINE L2 3206 3259 -13 207 0 0 0 chr3 62701266 62701289 -155335869 + (ATG)n Simple_repeat Simple_repeat 3 25 0 1619 120 9 129 chr3 62706210 62706551 -155330607 + AluJb SINE Alu 1 300 -12 204 97 0 0 chr3 62708141 62708172 -155328986 + (T)n Simple_repeat Simple_repeat 1 31 0 495 220 43 43 chr3 62708401 62708542 -155328616 - MER103 DNA DNA -6 160 20 295 287 99 61 chr3 62708673 62708854 -155328304 + MIR3 SINE MIR 21 208 0 22 0 0 0 chr3 62710600 62710622 -155326536 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 62710782 62710805 -155326353 + AT_rich Low_complexity Low_complexity 1 23 0 2225 90 33 3 chr3 62711208 62711509 -155325649 - AluY SINE Alu -1 310 1 180 284 0 75 chr3 62711567 62711634 -155325524 + L2 LINE L2 3200 3261 -11 269 271 57 41 chr3 62712556 62712678 -155324480 + L2 LINE L2 3149 3272 0 1111 163 0 26 chr3 62713012 62713202 -155323956 + AluJo SINE Alu 127 311 -1 1683 197 0 29 chr3 62713427 62713742 -155323416 + AluJb SINE Alu 1 306 -6 405 200 21 147 chr3 62713925 62714115 -155323043 - MLT1K LTR MaLR -1 587 422 1235 64 13 0 chr3 62714252 62714408 -155322750 - L1PA10 LINE L1 -4 6164 6007 1763 88 12 8 chr3 62714421 62714670 -155322488 - L1PA14 LINE L1 0 6161 5912 181 167 71 0 chr3 62716018 62716060 -155321098 - L2 LINE L2 -5 3308 3264 322 261 128 39 chr3 62716389 62716429 -155320729 - L1MB1 LINE L1 -240 5949 5910 675 287 69 40 chr3 62716429 62716812 -155320346 - L1MC4a LINE L1 -355 5808 5509 230 139 0 0 chr3 62718915 62718951 -155318207 - MADE1 DNA Mariner 0 80 45 2991 150 75 54 chr3 62719298 62719463 -155317695 + MER7C DNA MER2_type 3 163 -2865 1694 151 61 7 chr3 62719463 62719742 -155317416 + AluSx SINE Alu 1 294 -18 2991 150 75 54 chr3 62719742 62720164 -155316994 + MER7C DNA MER2_type 163 602 0 569 269 27 21 chr3 62720179 62720365 -155316793 - MIR SINE MIR -70 192 6 193 236 169 11 chr3 62720584 62720673 -155316485 + MIR SINE MIR 50 152 -110 231 340 43 0 chr3 62720752 62720846 -155316312 - MIR SINE MIR -80 182 85 327 331 87 0 chr3 62721557 62721684 -155315474 - MIR SINE MIR -74 188 51 271 211 53 13 chr3 62721839 62721915 -155315243 + MIR SINE MIR 110 188 -74 343 268 68 68 chr3 62722054 62722244 -155314914 + MIR SINE MIR 21 210 -52 195 42 0 0 chr3 62722516 62722540 -155314618 + (TTCCC)n Simple_repeat Simple_repeat 5 28 0 201 321 89 0 chr3 62722834 62722946 -155314212 - MIR SINE MIR -37 225 104 189 271 0 43 chr3 62723059 62723129 -155314029 + MIR SINE MIR 20 86 -122 2463 94 0 0 chr3 62723575 62723882 -155313276 - AluSg SINE Alu -3 307 1 188 341 40 48 chr3 62724358 62724484 -155312674 + L2 LINE L2 3169 3293 -20 653 298 125 10 chr3 62724748 62725043 -155312115 + MARNA DNA Mariner 245 573 -13 4580 158 62 25 chr3 62725744 62726584 -155310574 - L1MB8 LINE L1 -15 6163 5285 2164 125 0 0 chr3 62726584 62726879 -155310279 + AluSx SINE Alu 1 295 -17 4580 158 62 25 chr3 62726879 62726981 -155310177 - L1MB8 LINE L1 -893 5285 5188 547 188 12 25 chr3 62726981 62727141 -155310017 + CT-rich Low_complexity Low_complexity 1 158 0 1444 203 18 11 chr3 62727145 62727431 -155309727 - AluJo SINE Alu -13 299 12 296 183 17 0 chr3 62727436 62727496 -155309662 - L1MB8 LINE L1 -939 5207 5147 228 331 93 26 chr3 62727513 62727664 -155309494 - MIR3 SINE MIR -14 194 34 543 246 51 93 chr3 62727845 62727946 -155309212 - MER3 DNA MER1_type -3 206 117 1548 178 11 39 chr3 62727946 62728227 -155308931 + AluJo SINE Alu 1 273 -39 543 246 51 93 chr3 62728227 62728340 -155308818 - MER3 DNA MER1_type -92 117 1 2612 105 54 5 chr3 62728748 62729157 -155308001 - L1MA4 LINE L1 -7 6293 5865 191 284 25 37 chr3 62729554 62729635 -155307523 - MIR SINE MIR -90 118 39 246 235 15 15 chr3 62729978 62730046 -155307112 + L2 LINE L2 3134 3201 -71 201 194 0 0 chr3 62731830 62731866 -155305292 - L2 LINE L2 -94 3178 3143 1160 241 73 60 chr3 62731917 62732381 -155304777 - MLT1K LTR MaLR -36 552 83 245 225 247 0 chr3 62732848 62732937 -155304221 + MIR SINE MIR 125 235 -27 388 250 30 70 chr3 62733173 62733371 -155303787 - MIR SINE MIR -48 214 28 4898 229 64 22 chr3 62734125 62735080 -155302078 - L1MB8 LINE L1 -982 5164 4124 189 74 0 0 chr3 62735080 62735107 -155302051 + (TATG)n Simple_repeat Simple_repeat 2 28 0 4898 229 64 22 chr3 62735107 62735624 -155301534 - L1MB8 LINE L1 -2022 4124 3630 1843 129 26 36 chr3 62736949 62737252 -155299906 - AluJo SINE Alu -12 300 1 242 250 38 0 chr3 62741015 62741095 -155296063 + (TCTCTG)n Simple_repeat Simple_repeat 2 84 0 1540 179 96 3 chr3 62742662 62742974 -155294184 + MER58B DNA MER1_type 1 341 0 1970 209 117 118 chr3 62743364 62744242 -155292916 - L1MC5 LINE L1 -37 7924 7047 2117 111 6 29 chr3 62744242 62744557 -155292601 - AluSx SINE Alu -4 308 1 1970 209 117 118 chr3 62744557 62744920 -155292238 - L1MC5 LINE L1 -914 7047 6685 1360 250 123 53 chr3 62745141 62745204 -155291954 - L1ME3A LINE L1 -206 5964 5907 2223 118 0 0 chr3 62745204 62745508 -155291650 - AluSg SINE Alu -6 304 1 1360 250 123 53 chr3 62745508 62746175 -155290983 - L1ME3A LINE L1 -263 5907 5167 2159 103 0 62 chr3 62746177 62746526 -155290632 - AluSx SINE Alu 0 312 1 407 220 163 40 chr3 62746717 62746852 -155290306 - L1MC5 LINE L1 -1884 5924 5807 2115 128 0 0 chr3 62746852 62747142 -155290016 - AluSq SINE Alu -23 290 1 407 220 163 40 chr3 62747142 62747283 -155289875 - L1MC5 LINE L1 -2001 5807 5614 1419 178 19 29 chr3 62747971 62748280 -155288878 + L1MB8 LINE L1 5873 6178 0 1690 176 4 4 chr3 62748398 62748677 -155288481 + AluJo SINE Alu 1 279 -33 285 29 0 0 chr3 62748681 62748715 -155288443 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 2223 76 14 4 chr3 62748873 62749149 -155288009 + AluSp SINE Alu 1 279 -34 286 0 0 0 chr3 62749152 62749190 -155287968 + L1PA3 LINE L1 6115 6152 -3 228 86 0 0 chr3 62749222 62749257 -155287901 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 534 212 62 129 chr3 62749680 62749921 -155287237 - MIR SINE MIR 0 262 38 507 244 127 48 chr3 62750872 62751101 -155286057 + MIR SINE MIR 16 262 0 331 241 102 19 chr3 62751197 62751305 -155285853 + MIR3 SINE MIR 92 208 0 219 361 8 17 chr3 62753157 62753276 -155283882 - MIR SINE MIR -65 143 26 282 309 103 0 chr3 62753362 62753488 -155283670 - L2 LINE L2 0 3272 3134 28 0 0 0 chr3 62754453 62754481 -155282677 + AT_rich Low_complexity Low_complexity 1 28 0 238 333 12 0 chr3 62754895 62754979 -155282179 - MIR SINE MIR -70 192 108 276 236 18 91 chr3 62755504 62755614 -155281544 + MIR SINE MIR 45 146 -62 29 28 0 0 chr3 62755806 62755842 -155281316 + AT_rich Low_complexity Low_complexity 1 36 0 2127 121 0 0 chr3 62758478 62758760 -155278398 - AluSx SINE Alu -9 303 22 192 125 0 0 chr3 62759438 62759470 -155277688 + (CCTG)n Simple_repeat Simple_repeat 4 35 0 203 133 0 0 chr3 62759620 62759650 -155277508 + (TG)n Simple_repeat Simple_repeat 1 30 0 2452 81 0 0 chr3 62760015 62760310 -155276848 + AluY SINE Alu 1 295 -16 219 36 0 0 chr3 62761534 62761562 -155275596 + (TG)n Simple_repeat Simple_repeat 2 29 0 189 0 0 0 chr3 62761562 62761583 -155275575 + (T)n Simple_repeat Simple_repeat 1 21 0 2796 216 93 36 chr3 62761916 62762812 -155274346 - L1ME1 LINE L1 -2 6558 5715 2251 118 3 7 chr3 62762812 62763116 -155274042 - AluSx SINE Alu -9 303 1 2796 216 93 36 chr3 62763116 62763314 -155273844 - L1ME1 LINE L1 -845 5715 5530 2380 83 7 0 chr3 62763314 62763616 -155273542 + AluSp SINE Alu 1 304 -9 2796 216 93 36 chr3 62763616 62764112 -155273046 - L1ME1 LINE L1 -1030 5530 4886 1817 207 56 39 chr3 62764110 62764680 -155272478 - L1ME1 LINE L1 -2232 4308 3729 * 2074 243 107 28 chr3 62764660 62765685 -155271473 - L1ME1 LINE L1 -4573 1967 896 183 80 0 0 chr3 62766162 62766187 -155270971 + (T)n Simple_repeat Simple_repeat 1 25 0 349 370 40 34 chr3 62766188 62766485 -155270673 - L1ME1 LINE L1 -6226 314 16 1105 202 75 3 chr3 62766640 62766930 -155270228 - MER58B DNA MER1_type 0 341 2 403 314 99 6 chr3 62767130 62767302 -155269856 - MIR SINE MIR -58 204 17 306 336 18 18 chr3 62767404 62767514 -155269644 + MIR3 SINE MIR 45 154 -54 314 271 65 0 chr3 62768224 62768331 -155268827 + MER20B DNA MER1_type 2 115 -668 227 261 153 27 chr3 62768478 62768589 -155268569 + MER46C DNA MER2_type 4 128 -210 538 223 0 15 chr3 62768617 62768747 -155268411 - L1MB7 LINE L1 -11 6173 6046 344 219 8 34 chr3 62768779 62768931 -155268227 + MER46C DNA MER2_type 150 335 -3 389 236 0 11 chr3 62768931 62769020 -155268138 - MIR SINE MIR -62 200 113 2217 105 0 32 chr3 62769342 62769655 -155267503 + AluSx SINE Alu 1 303 -9 975 256 146 27 chr3 62769687 62770266 -155266892 - L1ME2 LINE L1 -184 5980 5286 1948 123 7 0 chr3 62770266 62770535 -155266623 - AluSx SINE Alu -15 297 27 975 256 146 27 chr3 62770535 62770723 -155266435 - L1ME2 LINE L1 -878 5286 5122 841 243 48 0 chr3 62770747 62770953 -155266205 - MIR SINE MIR -6 256 41 558 282 70 27 chr3 62771038 62771368 -155265790 - L1ME2 LINE L1 -1112 5034 4691 246 128 0 0 chr3 62771430 62771469 -155265689 + (CA)n Simple_repeat Simple_repeat 2 40 0 640 276 123 27 chr3 62772254 62772782 -155264376 + L2 LINE L2 2737 3312 -1 2689 288 61 16 chr3 62774248 62775398 -155261760 + L2 LINE L2 1095 2295 -1019 521 202 89 8 chr3 62775491 62775615 -155261543 + L2 LINE L2 3180 3313 0 452 309 76 18 chr3 62775857 62776080 -155261078 + MIR SINE MIR 11 246 -16 240 250 0 0 chr3 62776945 62777001 -155260157 - L2 LINE L2 -218 3054 2999 416 308 165 49 chr3 62778242 62778459 -155258699 + L2 LINE L2 2310 2500 -814 2103 132 0 0 chr3 62778459 62778800 -155258358 - AluJb SINE Alu 0 341 1 416 308 165 49 chr3 62778800 62779174 -155257984 + L2 LINE L2 2500 2972 -342 963 315 43 11 chr3 62779408 62779846 -155257312 + L2 LINE L2 2843 3294 -19 207 0 0 0 chr3 62779849 62779872 -155257286 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 450 226 130 0 chr3 62779925 62780040 -155257118 - L1MB4 LINE L1 -1 6179 6050 243 344 108 6 chr3 62783169 62783326 -155253832 + MIR SINE MIR 2 174 -88 409 280 138 48 chr3 62783385 62783674 -155253484 - MLT1K LTR MaLR -100 488 174 751 185 123 0 chr3 62784815 62784961 -155252197 + MER45A DNA AcHobo 1 164 -14 181 247 346 12 chr3 62786764 62786845 -155250313 + L2 LINE L2 3164 3271 -1 187 269 11 75 chr3 62787033 62787126 -155250032 + MIR3 SINE MIR 8 94 -114 330 289 81 13 chr3 62787390 62787539 -155249619 - L1ME4a LINE L1 -17 6104 5946 231 213 21 0 chr3 62790601 62790648 -155246510 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 396 0 0 0 chr3 62792377 62792421 -155244737 + (TG)n Simple_repeat Simple_repeat 1 44 0 218 261 0 14 chr3 62792801 62792870 -155244288 - MIR SINE MIR -102 160 93 474 311 92 59 chr3 62793153 62793760 -155243398 - L2 LINE L2 -509 2805 2179 878 211 0 0 chr3 62795718 62795874 -155241284 - FRAM SINE Alu -10 156 1 272 291 162 0 chr3 62796756 62796904 -155240254 + MIR SINE MIR 21 192 -70 2132 138 0 3 chr3 62797342 62797654 -155239504 - AluSx SINE Alu -1 311 1 297 270 137 58 chr3 62798148 62798624 -155238534 - L2 LINE L2 -25 3288 2707 2139 86 57 4 chr3 62798809 62799089 -155238069 - AluSq SINE Alu -18 295 1 325 256 139 16 chr3 62800491 62800620 -155236538 - L2 LINE L2 0 3313 3169 2402 148 112 14 chr3 62802528 62802974 -155234184 + MLT1D LTR MaLR 16 505 0 403 245 48 62 chr3 62803233 62803441 -155233717 - L2 LINE L2 -1 3312 3108 185 322 33 25 chr3 62803451 62803572 -155233586 - MIR SINE MIR -120 142 21 506 150 0 0 chr3 62803981 62804061 -155233097 - MADE1 DNA Mariner 0 80 1 1970 137 0 32 chr3 62804394 62804709 -155232449 + AluSx SINE Alu 1 305 -7 426 276 39 19 chr3 62805360 62805516 -155231642 - L1ME4a LINE L1 -362 5759 5601 592 246 67 26 chr3 62805596 62805791 -155231367 + MIR SINE MIR 8 210 -52 364 253 61 20 chr3 62806594 62806693 -155230465 - MIR SINE MIR -126 136 34 216 333 0 0 chr3 62807735 62807792 -155229366 + (TAG)n Simple_repeat Simple_repeat 1 57 0 2251 102 0 32 chr3 62807798 62808111 -155229047 - AluSx SINE Alu -9 303 1 5032 137 34 3 chr3 62808116 62809038 -155228120 - L1MA4 LINE L1 -186 6114 5166 921 230 22 5 chr3 62809392 62809614 -155227544 + MIR SINE MIR 10 235 -27 244 259 43 99 chr3 62809839 62810001 -155227157 + MER5B DNA MER1_type 14 166 -12 1284 215 87 81 chr3 62812764 62813317 -155223841 - L1ME1 LINE L1 -5 6230 5675 1122 212 114 66 chr3 62813363 62813759 -155223399 + MLT1E2 LTR MaLR 51 465 -161 6104 235 63 22 chr3 62813759 62815228 -155221930 - L1ME1 LINE L1 -1114 5101 3482 2466 92 0 0 chr3 62815228 62815533 -155221625 + AluY SINE Alu 1 305 -6 6104 235 63 22 chr3 62815533 62816655 -155220503 - L1ME1 LINE L1 -2733 3482 2407 502 263 99 5 chr3 62816679 62816892 -155220266 - L1ME1 LINE L1 -4078 2318 2086 1876 256 109 43 chr3 62816898 62817196 -155219962 - L1ME1 LINE L1 -4574 1822 1545 1765 161 0 30 chr3 62817196 62817501 -155219657 + AluJo SINE Alu 1 296 -16 1876 256 109 43 chr3 62817501 62817871 -155219287 - L1ME1 LINE L1 -4851 1545 1201 811 259 46 9 chr3 62817871 62818087 -155219071 - MER58A DNA MER1_type 0 224 1 1876 256 109 43 chr3 62818087 62818512 -155218646 - L1ME1 LINE L1 -5195 1201 656 910 281 101 42 chr3 62818565 62819060 -155218098 - L1ME1 LINE L1 -5835 561 38 198 336 39 39 chr3 62819503 62819631 -155217527 + MIR3 SINE MIR 15 142 -66 195 42 0 0 chr3 62819644 62819668 -155217490 + (TG)n Simple_repeat Simple_repeat 1 24 0 419 153 30 137 chr3 62819967 62820098 -155217060 - LTR41 LTR ERVL -16 757 641 740 191 7 7 chr3 62820111 62820252 -155216906 + FLAM_A SINE Alu 1 141 -1 1354 213 208 68 chr3 62820257 62820801 -155216357 - LTR41 LTR ERVL -153 620 1 1952 321 20 20 chr3 62821174 62821958 -155215200 - ERVL LTR ERVL -384 5380 4597 270 299 30 45 chr3 62822063 62822197 -155214961 + MIR3 SINE MIR 62 193 -15 422 274 34 69 chr3 62823473 62823677 -155213481 + MIR SINE MIR 62 258 -4 190 219 27 82 chr3 62823660 62823733 -155213425 - MIR SINE MIR -85 177 109 * 257 351 9 0 chr3 62823989 62824100 -155213058 + L2 LINE L2 3160 3271 -1 514 213 66 0 chr3 62824927 62825063 -155212095 + MIR SINE MIR 40 184 -78 344 298 137 0 chr3 62825962 62826130 -155211028 - L2 LINE L2 -5 3308 3118 1792 143 21 11 chr3 62826392 62826679 -155210479 - AluJo SINE Alu -10 302 13 2245 216 103 7 chr3 62827641 62828145 -155209013 + L1ME2 LINE L1 5041 5495 -669 1744 138 0 12 chr3 62828145 62828399 -155208759 - AluSx SINE Alu -9 303 53 2245 216 103 7 chr3 62828399 62828529 -155208629 + L1ME2 LINE L1 5495 5611 -553 2363 69 78 0 chr3 62828529 62828863 -155208295 + L1PA13 LINE L1 5798 6157 -6 2245 216 103 7 chr3 62828863 62828995 -155208163 + L1ME2 LINE L1 5611 5887 -277 2160 92 10 7 chr3 62828995 62829288 -155207870 - AluY SINE Alu -17 294 1 259 356 0 10 chr3 62832731 62832835 -155204323 + MIR SINE MIR 36 138 -70 2299 107 0 22 chr3 62833831 62834150 -155203008 + AluSx SINE Alu 1 312 0 1026 222 57 0 chr3 62835097 62835309 -155201849 - MER58A DNA MER1_type 0 224 1 15179 122 39 5 chr3 62836872 62839210 -155197948 - Tigger1 DNA MER2_type 0 2418 1 285 216 50 122 chr3 62839284 62839311 -155197847 - MIR SINE MIR -67 141 114 1171 198 167 4 chr3 62839311 62839569 -155197589 + AluSx SINE Alu 1 300 -2 285 216 50 122 chr3 62839569 62839680 -155197478 - MIR SINE MIR -94 114 13 256 331 71 0 chr3 62840845 62840972 -155196186 - MIR SINE MIR -75 187 52 2039 123 0 13 chr3 62842408 62842708 -155194450 - AluSx SINE Alu -16 296 1 280 197 53 13 chr3 62842743 62842819 -155194339 + MER112 DNA MER1_type 134 212 -48 528 262 36 68 chr3 62844607 62844828 -155192330 - MIR SINE MIR 0 262 49 519 60 15 0 chr3 62845287 62845354 -155191804 + AluSq/x SINE Alu 68 135 -177 2227 119 0 6 chr3 62845475 62845786 -155191372 - AluSc SINE Alu 0 309 1 2182 119 10 3 chr3 62845952 62846262 -155190896 - AluSx SINE Alu 0 312 1 282 253 96 48 chr3 62846834 62847000 -155190158 + MER117 DNA MER1_type 4 177 -20 249 297 68 76 chr3 62847372 62847608 -155189550 + L2 LINE L2 3031 3264 -8 354 241 62 157 chr3 62848087 62848519 -155188639 - MLT1K LTR MaLR -4 584 194 186 373 0 0 chr3 62849115 62849190 -155187968 - MIR SINE MIR -109 153 79 198 280 20 0 chr3 62849754 62849804 -155187354 - MIR3 SINE MIR -41 167 117 185 302 0 0 chr3 62850087 62850150 -155187008 - MIR3 SINE MIR -10 198 136 213 416 0 0 chr3 62850190 62850279 -155186879 - L2 LINE L2 -50 3222 3134 6262 149 17 9 chr3 62850290 62851758 -155185400 - L1MA8 LINE L1 -2 6289 4812 22 0 0 0 chr3 62851765 62851787 -155185371 + AT_rich Low_complexity Low_complexity 1 22 0 359 288 7 34 chr3 62851848 62851994 -155185164 - L2 LINE L2 -201 3071 2930 251 292 10 42 chr3 62852001 62852097 -155185061 - MIR3 SINE MIR -111 97 5 297 0 0 0 chr3 62854932 62854965 -155182193 + (CA)n Simple_repeat Simple_repeat 2 34 0 319 283 9 53 chr3 62856285 62856398 -155180760 - MIR3 SINE MIR -52 156 49 222 37 0 0 chr3 62857463 62857490 -155179668 + (T)n Simple_repeat Simple_repeat 1 27 0 3137 249 111 67 chr3 62858364 62858798 -155178360 + L1ME1 LINE L1 202 615 -5781 679 165 210 90 chr3 62858798 62858998 -155178160 + MER58A DNA MER1_type 1 224 0 3137 249 111 67 chr3 62858998 62859070 -155178088 + L1ME1 LINE L1 615 682 -5714 2186 123 0 0 chr3 62859070 62859362 -155177796 + AluSx SINE Alu 1 292 -20 3137 249 111 67 chr3 62859362 62860640 -155176518 + L1ME1 LINE L1 682 2066 -4330 754 241 71 0 chr3 62860720 62860890 -155176268 + MER58A DNA MER1_type 43 224 0 470 202 58 17 chr3 62860890 62861063 -155176095 + L1ME1 LINE L1 2057 2236 -4160 4827 146 29 2 chr3 62861108 62862564 -155174594 - L1PA14 LINE L1 -195 5966 4469 3460 221 59 16 chr3 62862564 62863660 -155173498 + L1ME1 LINE L1 5091 6232 -3 399 276 70 26 chr3 62864327 62864483 -155172675 - MIR3 SINE MIR -5 203 41 367 245 0 105 chr3 62865574 62865717 -155171441 - L2 LINE L2 0 3313 3186 445 225 131 6 chr3 62865745 62865905 -155171253 + MIR SINE MIR 75 254 -8 219 322 22 0 chr3 62866922 62867012 -155170146 + MIR SINE MIR 154 245 -17 464 299 46 23 chr3 62868590 62868764 -155168394 - MIR3 SINE MIR -15 193 16 351 62 0 0 chr3 62869743 62869791 -155167367 - MADE1 DNA Mariner 0 80 33 189 0 0 0 chr3 62869879 62869900 -155167258 + (TC)n Simple_repeat Simple_repeat 2 22 0 1909 105 89 0 chr3 62869900 62870157 -155167001 - AluSx SINE Alu -22 290 11 2872 115 12 14 chr3 62870852 62871278 -155165880 - LTR3 LTR ERVK -7 425 1 367 211 58 39 chr3 62871509 62871613 -155165545 + MIR3 SINE MIR 87 192 -16 306 106 0 0 chr3 62873916 62873963 -155163195 + (TG)n Simple_repeat Simple_repeat 1 47 0 21 36 0 0 chr3 62874518 62874546 -155162612 + AT_rich Low_complexity Low_complexity 1 28 0 1333 261 18 12 chr3 62874763 62875100 -155162058 - MER58B DNA MER1_type 0 341 3 219 174 65 0 chr3 62875379 62875425 -155161733 + L2 LINE L2 3204 3252 -20 190 244 0 0 chr3 62875966 62876011 -155161147 + MIR SINE MIR 78 122 -86 2273 91 7 13 chr3 62876437 62876746 -155160412 - AluSq SINE Alu -6 307 1 588 73 0 0 chr3 62878860 62878942 -155158216 + (TG)n Simple_repeat Simple_repeat 1 82 0 27 0 0 0 chr3 62881847 62881874 -155155284 + AT_rich Low_complexity Low_complexity 1 27 0 209 188 14 43 chr3 62882350 62882419 -155154739 + C-rich Low_complexity Low_complexity 3 69 0 27 0 0 0 chr3 62882457 62882484 -155154674 + AT_rich Low_complexity Low_complexity 1 27 0 664 304 14 0 chr3 62883869 62884076 -155153082 + MIR SINE MIR 5 214 -48 27 29 0 0 chr3 62884215 62884249 -155152909 + AT_rich Low_complexity Low_complexity 1 34 0 2301 125 0 0 chr3 62885086 62885399 -155151759 + AluSq SINE Alu 1 313 0 237 253 0 121 chr3 62887559 62887650 -155149508 - L2 LINE L2 0 3272 3193 201 290 80 40 chr3 62887721 62887821 -155149337 - L2 LINE L2 -44 3269 3166 266 331 53 21 chr3 62887963 62888244 -155148914 - L2 LINE L2 -338 2976 2687 384 201 20 116 chr3 62888249 62888344 -155148814 + L1MC4 LINE L1 7862 7930 -112 1674 163 0 86 chr3 62888344 62888681 -155148477 + AluJo SINE Alu 1 308 -4 384 201 20 116 chr3 62888681 62888784 -155148374 + L1MC4 LINE L1 7930 8041 -1 224 289 26 13 chr3 62888805 62888881 -155148277 - L2 LINE L2 -616 2698 2622 952 310 106 34 chr3 62888888 62889855 -155147303 + L1MEc LINE L1 40 1075 -5321 5847 250 133 33 chr3 62889880 62890438 -155146720 + L1MEc LINE L1 1202 1703 -4512 2188 99 0 3 chr3 62890438 62890720 -155146438 + AluSp SINE Alu 1 281 -32 5847 250 133 33 chr3 62890720 62893741 -155143417 + L1MEc LINE L1 1703 5102 -1113 1484 215 101 14 chr3 62893753 62894259 -155142899 + L1MEc LINE L1 5229 5793 -440 1764 156 9 40 chr3 62895737 62896058 -155141100 - AluJo SINE Alu -1 311 1 542 279 17 19 chr3 62896104 62896284 -155140874 - MIR SINE MIR -62 146 13 1819 95 44 24 chr3 62897248 62897500 -155139658 - AluSx SINE Alu -17 295 39 616 51 102 0 chr3 62897765 62898041 -155139117 + (TA)n Simple_repeat Simple_repeat 1 304 0 216 302 47 47 chr3 62898222 62898351 -155138807 - L2 LINE L2 -17 3296 3168 1590 162 62 10 chr3 62898874 62899164 -155137994 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr3 62899557 62899579 -155137579 + AT_rich Low_complexity Low_complexity 1 22 0 213 98 0 118 chr3 62899889 62899940 -155137218 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 1666 183 13 26 chr3 62902055 62902366 -155134792 - AluJb SINE Alu -5 307 1 356 236 8 55 chr3 62903659 62903786 -155133372 - L1MC4 LINE L1 0 8042 7922 * 1995 254 53 56 chr3 62903762 62904829 -155132329 - L1MC4 LINE L1 -944 7098 6038 638 250 183 55 chr3 62905836 62906240 -155130918 - L2 LINE L2 0 3313 2858 2002 150 0 16 chr3 62906264 62906570 -155130588 + AluSx SINE Alu 1 301 -11 284 102 20 0 chr3 62907105 62907154 -155130004 + (TC)n Simple_repeat Simple_repeat 1 50 0 1852 226 27 7 chr3 62907294 62907732 -155129426 + L1MB8 LINE L1 5721 6167 -11 2284 75 41 3 chr3 62907732 62908027 -155129131 - AluY SINE Alu -5 306 1 2156 115 13 13 chr3 62908027 62908332 -155128826 - AluSx SINE Alu -7 305 1 1086 80 0 7 chr3 62908334 62908472 -155128686 - AluSg1 SINE Alu -172 137 1 4471 153 23 4 chr3 62909557 62910294 -155126864 - L1PA16 LINE L1 0 6166 5416 260 303 0 0 chr3 62910663 62910729 -155126429 + (CA)n Simple_repeat Simple_repeat 1 66 0 748 235 75 11 chr3 62911775 62911962 -155125196 - MER3 DNA MER1_type -8 201 3 678 129 0 0 chr3 62912046 62912147 -155125011 + AluSg/x SINE Alu 208 308 -4 23 0 0 0 chr3 62912171 62912194 -155124964 + AT_rich Low_complexity Low_complexity 1 23 0 1828 135 0 21 chr3 62912194 62912476 -155124682 + AluSq SINE Alu 1 276 -37 264 59 0 0 chr3 62912476 62912510 -155124648 + (GGGGA)n Simple_repeat Simple_repeat 1 34 0 271 200 0 31 chr3 62912800 62912865 -155124293 + MIR3 SINE MIR 114 176 -32 7163 27 6 1 chr3 62914029 62915310 -155121848 - L1PA3 LINE L1 -55 6100 4812 1525 168 3 67 chr3 62915843 62916158 -155121000 + AluJb SINE Alu 14 308 -4 2253 125 0 0 chr3 62916300 62916595 -155120563 - AluSx SINE Alu -17 295 1 242 262 16 0 chr3 62917032 62917093 -155120065 - HsTC2 DNA Tc2 -1824 74 13 401 214 41 0 chr3 62917331 62917429 -155119729 - MER58B DNA MER1_type -17 324 223 401 254 26 52 chr3 62917703 62917896 -155119262 + L2 LINE L2 3118 3305 -8 243 0 0 0 chr3 62918401 62918428 -155118730 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 356 211 48 0 chr3 62918543 62918647 -155118511 - L1ME2 LINE L1 -9 6155 6047 937 201 63 5 chr3 62918653 62918842 -155118316 - MER20 DNA MER1_type -19 200 1 349 239 0 22 chr3 62918842 62918934 -155118224 - L1ME2 LINE L1 -131 6033 5944 2342 132 71 0 chr3 62919748 62920141 -155117017 + L1PA16 LINE L1 5741 6161 -5 283 215 62 108 chr3 62920141 62920260 -155116898 + L1ME2 LINE L1 5964 6078 -86 417 216 11 11 chr3 62920260 62920348 -155116810 + MLT1E2 LTR MaLR 1 88 -538 2040 129 21 6 chr3 62920462 62920788 -155116370 + L1PA13 LINE L1 5833 6163 0 233 310 0 0 chr3 62920794 62920865 -155116293 + L1ME3 LINE L1 6092 6162 0 385 261 197 18 chr3 62922386 62922604 -155114554 + MIR SINE MIR 5 261 -1 189 0 0 0 chr3 62922657 62922678 -155114480 + (A)n Simple_repeat Simple_repeat 1 21 0 27 0 0 0 chr3 62923022 62923049 -155114109 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr3 62923102 62923126 -155114032 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr3 62923156 62923194 -155113964 + AT_rich Low_complexity Low_complexity 1 38 0 284 256 0 39 chr3 62923858 62923936 -155113222 + MER116 DNA Mariner 6 80 0 185 326 11 45 chr3 62924152 62924241 -155112917 + MIR SINE MIR 59 144 -118 327 247 14 0 chr3 62925755 62925828 -155111330 + MIR SINE MIR 6 79 -183 397 234 0 0 chr3 62926149 62926226 -155110932 - MER45B DNA AcHobo 0 1040 964 690 207 0 0 chr3 62926226 62926342 -155110816 - MER45B DNA AcHobo -437 603 488 1743 158 21 3 chr3 62926348 62926633 -155110525 + AluSx SINE Alu 1 290 -22 278 183 113 14 chr3 62926776 62926847 -155110311 + AluJ/FRAM SINE Alu 225 302 0 658 89 33 0 chr3 62926970 62927060 -155110098 - HY4 scRNA scRNA 0 93 1 1276 225 65 71 chr3 62927060 62927419 -155109739 - L1MC4 LINE L1 -132 7910 7553 1459 193 15 8 chr3 62927419 62927684 -155109474 + AluSq SINE Alu 31 297 -16 1276 225 65 71 chr3 62927684 62927818 -155109340 - L1MC4 LINE L1 -489 7553 7420 505 185 11 0 chr3 62928091 62928183 -155108975 - AluY SINE Alu -217 94 2 818 138 0 31 chr3 62928187 62928346 -155108812 - L1 LINE L1 -1663 4483 4330 600 193 50 36 chr3 62928350 62928490 -155108668 + FLAM_C SINE Alu 2 143 0 3942 156 27 7 chr3 62928509 62929221 -155107937 - L1 LINE L1 -1815 4331 3606 1112 151 73 46 chr3 62929222 62929440 -155107718 - AluJb SINE Alu -15 297 74 6234 205 35 12 chr3 62929569 62930811 -155106347 - L1PA15-16 LINE L1 -4911 1938 709 2263 106 3 0 chr3 62931056 62931349 -155105809 + AluSq SINE Alu 1 294 -19 704 185 29 101 chr3 62931351 62931399 -155105759 - L1ME2 LINE L1 0 6164 6114 765 113 16 24 chr3 62931399 62931523 -155105635 + FLAM_C SINE Alu 1 123 -10 704 185 29 101 chr3 62931523 62931712 -155105446 - L1ME2 LINE L1 -50 6114 5944 1378 171 58 16 chr3 62933319 62933576 -155103582 + AluJb SINE Alu 28 295 -17 528 307 75 57 chr3 62933576 62933960 -155103198 - L2 LINE L2 -1470 1844 1454 761 260 11 0 chr3 62934123 62934304 -155102854 + AluJo SINE Alu 2 184 -128 1187 136 62 11 chr3 62934503 62934775 -155102383 - L1 LINE L1 -2808 3338 3053 229 284 68 0 chr3 62934958 62935032 -155102126 - L2 LINE L2 -186 3086 3008 2263 100 7 3 chr3 62935799 62936100 -155101058 - AluSp SINE Alu -11 302 1 209 267 0 0 chr3 62936862 62936907 -155100251 + (CA)n Simple_repeat Simple_repeat 2 46 0 615 265 27 27 chr3 62936996 62937219 -155099939 - MER58A DNA MER1_type -1 223 1 233 68 68 0 chr3 62937318 62937362 -155099796 - Alu SINE Alu -3 300 254 844 186 49 85 chr3 62939321 62939627 -155097531 + L1MC4 LINE L1 6994 7288 -754 602 228 134 31 chr3 62940209 62940437 -155096721 + L1ME3A LINE L1 5912 6159 -7 248 302 22 77 chr3 62940866 62941048 -155096110 + L2 LINE L2 2889 3060 -212 195 116 116 0 chr3 62941437 62941480 -155095678 - MIR SINE MIR -111 151 104 571 192 92 15 chr3 62941703 62941833 -155095325 - FLAM_C SINE Alu -2 141 2 289 340 28 7 chr3 62942722 62942863 -155094295 - L1MC4a LINE L1 -1888 5920 5777 400 302 62 10 chr3 62943205 62943397 -155093761 - L1P LINE L1 -1089 5057 4856 1237 178 92 61 chr3 62943521 62943814 -155093344 - AluJo SINE Alu -10 302 1 1916 182 55 5 chr3 62943814 62944199 -155092959 - L1MB3 LINE L1 -42 6141 5738 271 289 110 26 chr3 62944185 62944413 -155092745 - L1MB3 LINE L1 -772 5374 5128 * 2666 83 0 0 chr3 62944553 62944904 -155092254 - L1PA14 LINE L1 0 6161 5811 368 312 7 28 chr3 62945255 62945396 -155091762 - MIR3 SINE MIR -61 147 10 234 259 71 0 chr3 62946046 62946131 -155091027 - MIR SINE MIR -69 193 103 397 283 29 35 chr3 62946220 62946393 -155090765 - MIR SINE MIR -12 250 79 3441 104 41 6 chr3 62947395 62947904 -155089254 + L1PA14 LINE L1 5633 6159 -2 23 0 0 0 chr3 62947904 62947927 -155089231 + AT_rich Low_complexity Low_complexity 1 23 0 614 242 46 26 chr3 62947927 62948121 -155089037 + Charlie7 DNA MER1_type 2126 2323 -289 266 219 106 60 chr3 62948292 62948443 -155088715 - Charlie7 DNA MER1_type -1 2611 2454 537 275 182 0 chr3 62948448 62948684 -155088474 + L1MC4 LINE L1 7525 7803 -239 494 333 21 13 chr3 62950171 62950405 -155086753 + MIR SINE MIR 15 250 -12 21 0 0 0 chr3 62951877 62951898 -155085260 + AT_rich Low_complexity Low_complexity 1 21 0 358 78 47 0 chr3 62952377 62952441 -155084717 + L1MA3 LINE L1 6239 6305 0 202 350 12 0 chr3 62952496 62952576 -155084582 + MIR SINE MIR 69 149 -113 277 222 40 30 chr3 62952660 62952759 -155084399 + L1ME LINE L1 5556 5655 -466 1805 132 28 28 chr3 62953015 62953303 -155083855 + AluJo SINE Alu 1 288 -24 26 0 0 0 chr3 62953370 62953396 -155083762 + AT_rich Low_complexity Low_complexity 1 26 0 281 375 7 7 chr3 62955160 62955312 -155081846 - MLT1I LTR MaLR -159 250 99 283 200 12 12 chr3 62956537 62956617 -155080541 + CT-rich Low_complexity Low_complexity 3 82 0 3508 183 15 9 chr3 62956755 62957440 -155079718 - L1MB5 LINE L1 -1 6173 5485 1727 78 0 0 chr3 62958538 62958742 -155078416 + AluSx SINE Alu 1 204 -108 225 184 83 18 chr3 62958876 62958985 -155078173 + (TATAA)n Simple_repeat Simple_repeat 1 116 0 609 167 0 0 chr3 62959675 62959814 -155077344 - AluSg/x SINE Alu 0 349 211 2012 112 32 4 chr3 62959966 62960273 -155076885 - AluSg SINE Alu 0 315 1 276 30 0 0 chr3 62960311 62960344 -155076814 + (GGTTG)n Simple_repeat Simple_repeat 5 37 0 436 224 20 0 chr3 62965280 62965378 -155071780 + MIR SINE MIR 91 190 -72 1658 138 0 16 chr3 62965473 62965727 -155071431 - L1PB4 LINE L1 -12 6144 5895 431 247 63 52 chr3 62966029 62966203 -155070955 + MER5B DNA MER1_type 3 178 0 336 301 7 44 chr3 62967886 62968022 -155069136 + L2 LINE L2 3182 3312 -1 809 266 115 0 chr3 62968030 62968256 -155068902 - MIR SINE MIR 0 262 11 496 303 57 41 chr3 62968617 62968861 -155068297 - MIR SINE MIR -14 248 1 1777 149 9 59 chr3 62969791 62970113 -155067045 + AluJo SINE Alu 1 306 -6 278 304 0 54 chr3 62970603 62970751 -155066407 - MIR3 SINE MIR -11 197 58 275 259 45 27 chr3 62972066 62972178 -155064980 - MIR3 SINE MIR -9 199 86 429 20 0 0 chr3 62972337 62972387 -155064771 + (TG)n Simple_repeat Simple_repeat 1 50 0 25 0 0 0 chr3 62972943 62972968 -155064190 + AT_rich Low_complexity Low_complexity 1 25 0 275 250 265 7 chr3 62973560 62973696 -155063462 + MIR3 SINE MIR 31 201 -7 194 371 0 0 chr3 62974462 62974532 -155062626 - MIR SINE MIR -110 152 83 308 302 43 26 chr3 62974993 62975109 -155062049 - MIR3 SINE MIR 0 208 91 26 0 0 0 chr3 62977417 62977443 -155059715 + GC_rich Low_complexity Low_complexity 1 26 0 312 250 102 9 chr3 62978148 62978256 -155058902 - MIR SINE MIR -110 152 35 417 273 122 0 chr3 62978939 62979078 -155058080 + L1ME3A LINE L1 6007 6162 -8 1899 215 52 39 chr3 62979087 62979908 -155057250 + L1MC4 LINE L1 4971 5801 -365 395 323 32 48 chr3 62981558 62981806 -155055352 - L3 LINE CR1 -2 1575 1332 502 284 24 34 chr3 62981945 62982115 -155055043 - MIR3 SINE MIR -7 201 34 970 313 72 27 chr3 62984029 62984656 -155052502 - L1MC4a LINE L1 -1877 5931 5277 416 241 60 23 chr3 62984914 62985047 -155052111 + L1MC4 LINE L1 5793 5930 -1878 2100 123 7 0 chr3 62985197 62985490 -155051668 + AluSx SINE Alu 1 295 -17 285 325 13 0 chr3 62986499 62986576 -155050582 + L2 LINE L2 3193 3270 -2 2292 108 0 13 chr3 62986966 62987280 -155049878 - AluSx SINE Alu -2 310 1 213 299 131 28 chr3 62987309 62987416 -155049742 + L2 LINE L2 3137 3254 -18 345 312 147 18 chr3 62987533 62987703 -155049455 + L2 LINE L2 3118 3309 -4 204 247 104 39 chr3 62988654 62988731 -155048427 + L2 LINE L2 3191 3272 0 361 293 42 47 chr3 62988742 62988933 -155048225 + MARNA DNA Mariner 391 580 -6 297 0 0 0 chr3 62989087 62989120 -155048038 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 412 276 155 0 chr3 62990436 62990552 -155046606 - L2 LINE L2 -1 3271 3138 180 111 0 0 chr3 62991658 62991685 -155045473 + (GGA)n Simple_repeat Simple_repeat 1 27 0 342 45 0 0 chr3 62992752 62992796 -155044362 + (TG)n Simple_repeat Simple_repeat 1 44 0 449 258 0 0 chr3 62992796 62992885 -155044273 + L1MC4 LINE L1 6615 6703 -1339 209 258 30 0 chr3 62993142 62993208 -155043950 + (CATATA)n Simple_repeat Simple_repeat 4 71 0 301 181 9 162 chr3 62993210 62993315 -155043843 - L1MC4 LINE L1 -1340 6702 6614 207 225 0 0 chr3 62993315 62993355 -155043803 + (TA)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chr3 62993615 62993638 -155043520 + AT_rich Low_complexity Low_complexity 1 23 0 202 296 176 0 chr3 62993857 62993965 -155043193 + MIR SINE MIR 47 173 -89 1754 187 3 3 chr3 62994897 62995196 -155041962 + AluJo SINE Alu 1 299 -13 1877 178 13 0 chr3 62995448 62995752 -155041406 + AluJo SINE Alu 1 308 -4 1276 171 145 43 chr3 62995784 62995857 -155041301 - MER2 DNA MER2_type 0 345 281 1868 90 116 19 chr3 62995857 62996125 -155041033 + AluSx SINE Alu 1 294 -18 1276 171 145 43 chr3 62996125 62996355 -155040803 - MER2 DNA MER2_type -64 281 11 2239 128 0 0 chr3 62996379 62996683 -155040475 + AluSq SINE Alu 1 304 -9 238 236 87 55 chr3 62998019 62998146 -155039012 + MIR3 SINE MIR 56 186 -22 22 0 0 0 chr3 63000305 63000327 -155036831 + AT_rich Low_complexity Low_complexity 1 22 0 444 160 0 0 chr3 63000970 63001045 -155036113 - MER116 DNA Mariner -5 75 1 323 357 53 6 chr3 63002197 63002368 -155034790 + MIR3 SINE MIR 13 191 -17 440 265 88 79 chr3 63002866 63003194 -155033964 + L2 LINE L2 2848 3178 -94 22 0 0 0 chr3 63003824 63003846 -155033312 + AT_rich Low_complexity Low_complexity 1 22 0 2379 111 0 0 chr3 63004072 63004378 -155032780 - AluSx SINE Alu -6 306 1 488 167 79 24 chr3 63004863 63004989 -155032169 - L1MB5 LINE L1 -8 6166 6034 275 289 44 0 chr3 63005554 63005644 -155031514 + MIR3 SINE MIR 100 193 -15 297 0 0 0 chr3 63006619 63006652 -155030506 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 284 254 107 58 chr3 63007367 63007540 -155029618 + MIR SINE MIR 9 192 -70 899 236 39 5 chr3 63008678 63008886 -155028272 - MER20 DNA MER1_type -4 215 1 261 302 65 22 chr3 63009039 63009178 -155027980 + MIR3 SINE MIR 43 187 -21 436 291 58 50 chr3 63011034 63011223 -155025935 + MIR SINE MIR 12 205 -57 2256 104 13 0 chr3 63011223 63011530 -155025628 - AluSx SINE Alu 0 312 2 436 291 58 50 chr3 63011530 63011581 -155025577 + MIR SINE MIR 205 254 -8 712 294 84 0 chr3 63013173 63013387 -155023771 + MIR SINE MIR 2 233 -29 264 186 0 0 chr3 63014148 63014207 -155022951 + (TG)n Simple_repeat Simple_repeat 1 59 0 211 309 163 46 chr3 63016491 63016902 -155020256 + L2 LINE L2 2813 3271 -1 230 310 138 0 chr3 63017273 63017389 -155019769 - L2 LINE L2 -7 3265 3134 250 315 127 25 chr3 63018104 63018301 -155018857 - L2 LINE L2 -1635 1679 1463 225 329 0 14 chr3 63018501 63018571 -155018587 + MER5C DNA MER1_type 4 72 -252 222 191 0 0 chr3 63020575 63020622 -155016536 + (TG)n Simple_repeat Simple_repeat 1 47 0 267 319 46 0 chr3 63021728 63021845 -155015313 + MIR SINE MIR 30 153 -70 259 282 12 24 chr3 63023894 63023979 -155013179 - L2 LINE L2 0 3272 3189 620 199 11 83 chr3 63026056 63026116 -155011042 + MER5B DNA MER1_type 6 69 -109 2242 125 0 3 chr3 63026116 63026428 -155010730 + AluSx SINE Alu 1 311 -1 620 199 11 83 chr3 63026428 63026548 -155010610 + MER5B DNA MER1_type 69 173 -5 359 266 22 113 chr3 63031102 63031331 -155005827 + L1ME LINE L1 5575 5782 -339 192 77 0 0 chr3 63032493 63032519 -155004639 + (T)n Simple_repeat Simple_repeat 1 26 0 485 309 90 48 chr3 63032861 63033295 -155003863 + L2 LINE L2 2820 3271 -1 458 242 44 49 chr3 63033825 63034123 -155003035 + Charlie2b DNA MER1_type 1557 1908 -874 1895 133 65 0 chr3 63034128 63034407 -155002751 + AluJb SINE Alu 1 297 -15 244 355 54 32 chr3 63035239 63035425 -155001733 - L3b LINE CR1 -75 1508 1319 281 346 87 0 chr3 63035838 63035942 -155001216 - L2 LINE L2 -5 3267 3155 265 329 92 7 chr3 63037410 63037562 -154999596 - MIR SINE MIR -7 255 91 847 136 0 0 chr3 63037851 63037983 -154999175 + FLAM_C SINE Alu 2 133 0 377 85 0 34 chr3 63038174 63038233 -154998925 - MLT2B1 LTR ERVL 0 515 459 264 149 0 0 chr3 63038233 63038280 -154998878 + (TG)n Simple_repeat Simple_repeat 2 48 0 1822 167 131 30 chr3 63038280 63038716 -154998442 - MLT2B1 LTR ERVL -40 480 1 368 335 65 12 chr3 63039286 63039456 -154997702 + MIR SINE MIR 73 251 -11 353 270 67 0 chr3 63041030 63041119 -154996039 + L1MC4 LINE L1 6609 6703 -1339 360 229 108 51 chr3 63044471 63044628 -154992530 - MIR SINE MIR -4 258 93 353 109 16 0 chr3 63046259 63046323 -154990835 + (TG)n Simple_repeat Simple_repeat 2 66 0 25 0 0 0 chr3 63050240 63050265 -154986893 + AT_rich Low_complexity Low_complexity 1 25 0 925 188 53 14 chr3 63050653 63050861 -154986297 + MIR SINE MIR 2 217 -45 189 147 0 0 chr3 63051345 63051379 -154985779 + (TG)n Simple_repeat Simple_repeat 1 34 0 496 140 246 0 chr3 63053421 63053535 -154983623 - Charlie1 DNA MER1_type 0 2761 2620 * 715 233 105 0 chr3 63053525 63053735 -154983423 - Charlie1 DNA MER1_type -2528 233 2 429 70 0 0 chr3 63057126 63057183 -154979975 + (TG)n Simple_repeat Simple_repeat 1 57 0 1058 236 70 31 chr3 63060558 63060885 -154976273 - MER58B DNA MER1_type 0 341 2 477 109 5 73 chr3 63064545 63064737 -154972421 + (TCC)n Simple_repeat Simple_repeat 1 179 0 259 124 6 83 chr3 63064764 63064933 -154972225 + (TCC)n Simple_repeat Simple_repeat 3 158 0 282 205 24 24 chr3 63064981 63065108 -154972050 + CT-rich Low_complexity Low_complexity 5 131 0 180 0 0 0 chr3 63065207 63065227 -154971931 + (CTGGGG)n Simple_repeat Simple_repeat 3 22 0 2320 42 0 0 chr3 63067002 63067262 -154969896 + AluY SINE Alu 37 296 -15 2435 82 0 7 chr3 63069316 63069620 -154967538 + AluSx SINE Alu 9 310 -2 207 0 0 0 chr3 63071963 63071986 -154965172 + (T)n Simple_repeat Simple_repeat 1 23 0 2303 110 7 0 chr3 63073493 63073793 -154963365 - AluSx SINE Alu -10 302 1 1927 120 74 0 chr3 63075674 63075958 -154961200 - AluJb SINE Alu -7 305 1 203 369 0 0 chr3 63078789 63078854 -154958304 + L2 LINE L2 3246 3310 -3 302 291 47 16 chr3 63079072 63079199 -154957959 - MIR SINE MIR -37 225 95 270 263 97 26 chr3 63081753 63081867 -154955291 + MIR3 SINE MIR 35 156 -52 191 274 71 12 chr3 63083442 63083526 -154953632 - L2 LINE L2 -539 2775 2687 329 218 99 42 chr3 63083660 63083802 -154953356 + L1MC1 LINE L1 827 976 -5447 925 246 79 23 chr3 63083923 63084265 -154952893 + L1MC1 LINE L1 1176 1536 -4887 824 254 79 6 chr3 63084459 63084814 -154952344 + L1MC1 LINE L1 1780 2160 -4781 3765 231 42 11 chr3 63084836 63085833 -154951325 + L1MC1 LINE L1 4165 5192 -1749 631 180 36 0 chr3 63085836 63085947 -154951211 + AluJ SINE Alu 1 115 -187 1549 120 112 28 chr3 63085947 63086305 -154950853 + MSTA LTR MaLR 2 424 -4 402 219 200 21 chr3 63086310 63086484 -154950674 + AluJb SINE Alu 120 297 -5 6092 173 37 11 chr3 63086484 63086996 -154950162 + L1MC1 LINE L1 5188 5686 -1442 333 0 0 0 chr3 63086996 63087033 -154950125 + (CA)n Simple_repeat Simple_repeat 2 38 0 6092 173 37 11 chr3 63087033 63088396 -154948762 + L1MC1 LINE L1 5686 7113 -15 1394 228 65 25 chr3 63088405 63088805 -154948353 + LTR52 LTR ERVL 1 416 -5 1032 187 99 25 chr3 63088808 63089091 -154948067 + L1MB4 LINE L1 4372 4675 -1471 300 286 0 0 chr3 63089111 63089188 -154947970 + L1ME3A LINE L1 5792 5868 -302 207 146 0 0 chr3 63089236 63089277 -154947881 + (TA)n Simple_repeat Simple_repeat 2 42 0 1428 189 28 6 chr3 63089302 63089620 -154947538 + L1MCc LINE L1 3245 3569 -3372 375 178 15 118 chr3 63089621 63089756 -154947402 + L1M1 LINE L1 14 134 -7431 * 3900 144 16 0 chr3 63089751 63090367 -154946791 + L1M1 LINE L1 1103 1728 -5837 3315 186 50 41 chr3 63090378 63090721 -154946437 + L1MB4 LINE L1 5137 5476 -704 586 90 0 0 chr3 63090721 63090810 -154946348 + AluSc SINE Alu 215 303 -6 3315 186 50 41 chr3 63090810 63091083 -154946075 + L1MB4 LINE L1 5476 5745 -435 2496 90 0 3 chr3 63091083 63091395 -154945763 + AluY SINE Alu 1 311 0 3315 186 50 41 chr3 63091395 63091757 -154945401 + L1MB4 LINE L1 5745 6138 -42 2063 115 17 10 chr3 63092998 63093294 -154943864 + AluSx SINE Alu 1 298 -14 323 280 69 51 chr3 63093904 63094079 -154943079 + L1ME3 LINE L1 5611 5791 -330 182 159 23 0 chr3 63095246 63095290 -154941868 + L2 LINE L2 2922 2966 -348 265 260 192 0 chr3 63095641 63095745 -154941413 + L1ME3 LINE L1 6037 6160 -2 1384 161 25 65 chr3 63095766 63096045 -154941113 + AluJo SINE Alu 33 300 -12 2424 97 7 3 chr3 63096609 63096918 -154940240 + AluSx SINE Alu 1 310 -2 193 286 0 0 chr3 63097579 63097628 -154939530 + L2 LINE L2 3221 3269 -3 254 286 31 62 chr3 63097723 63097884 -154939274 + L2 LINE L2 2540 2695 -619 449 209 170 6 chr3 63098025 63098207 -154938951 + L1MC5 LINE L1 7258 7469 -492 3158 188 23 15 chr3 63098421 63099082 -154938076 + L1MA4 LINE L1 5521 6186 -114 1717 145 24 45 chr3 63099082 63099371 -154937787 + AluJo SINE Alu 11 293 -19 686 255 118 19 chr3 63099799 63100070 -154937088 + MER5C DNA MER1_type 27 324 0 341 130 0 0 chr3 63100285 63100339 -154936819 - Alu SINE Alu -34 266 213 1590 141 107 31 chr3 63100698 63100988 -154936170 + AluJo SINE Alu 1 312 0 291 266 28 77 chr3 63102129 63102272 -154934886 - MIR SINE MIR -82 180 45 252 232 76 5 chr3 63102652 63102757 -154934401 - MIR SINE MIR -58 150 42 242 200 0 18 chr3 63104213 63104268 -154932890 + MIR SINE MIR 97 150 -112 21 36 0 0 chr3 63104971 63104999 -154932159 + GC_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr3 63105006 63105031 -154932127 + GC_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr3 63105180 63105201 -154931957 + GC_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 63105351 63105373 -154931785 + GC_rich Low_complexity Low_complexity 1 22 0 2405 83 0 3 chr3 63106345 63106646 -154930512 + AluSx SINE Alu 1 300 -12 855 168 0 0 chr3 63108227 63108352 -154928806 + FLAM_C SINE Alu 1 125 -18 22 0 0 0 chr3 63108353 63108375 -154928783 + AT_rich Low_complexity Low_complexity 1 22 0 1124 232 129 79 chr3 63108661 63109048 -154928110 + L1ME3A LINE L1 5585 5951 -219 2366 94 0 10 chr3 63109048 63109355 -154927803 + AluSx SINE Alu 1 304 -8 2080 115 14 4 chr3 63109355 63109663 -154927495 + AluSx SINE Alu 1 311 0 1124 232 129 79 chr3 63109663 63109817 -154927341 + L1ME3A LINE L1 5950 6155 -15 369 301 80 75 chr3 63110579 63110805 -154926353 + MIR SINE MIR 22 248 -14 1919 161 24 0 chr3 63110968 63111266 -154925892 - AluJb SINE Alu -5 307 3 278 288 104 34 chr3 63111360 63111542 -154925616 + MIR3 SINE MIR 13 208 0 201 376 28 28 chr3 63111910 63112019 -154925139 + MIR SINE MIR 88 196 -66 530 275 126 5 chr3 63112037 63112244 -154924914 - MIR SINE MIR -26 236 5 2309 166 132 6 chr3 63112682 63112695 -154924463 - L1MD3 LINE L1 0 7995 7985 2126 131 0 13 chr3 63112695 63113030 -154924128 - AluSq SINE Alu 0 313 1 2309 166 132 6 chr3 63113030 63113539 -154923619 - L1MD3 LINE L1 -10 7985 7407 240 203 0 95 chr3 63113550 63113624 -154923534 - MLT1F1 LTR MaLR -456 111 45 1515 60 0 0 chr3 63113793 63113975 -154923183 + AluY SINE Alu 125 306 -5 188 264 165 41 chr3 63114238 63114359 -154922799 - MIR3 SINE MIR -60 148 13 1858 149 7 3 chr3 63116135 63116417 -154920741 - AluJb SINE Alu -28 284 2 1159 140 17 0 chr3 63118694 63118873 -154918285 + AluSg/x SINE Alu 131 312 0 214 352 57 23 chr3 63119230 63119318 -154917840 - MIR3 SINE MIR -117 91 1 16685 120 26 16 chr3 63119449 63122141 -154915017 + Tigger2 DNA MER2_type 1 2718 0 1972 156 0 0 chr3 63122655 63122956 -154914202 - AluJb SINE Alu -11 301 1 2317 61 3 0 chr3 63123088 63123381 -154913777 + AluY SINE Alu 1 294 -17 1385 184 60 11 chr3 63124950 63125233 -154911925 + AluJo SINE Alu 5 301 -11 2347 90 0 19 chr3 63125303 63125614 -154911544 - AluY SINE Alu -6 305 1 2298 62 0 0 chr3 63127846 63128121 -154909037 + AluY SINE Alu 14 288 -23 377 259 189 39 chr3 63129013 63129204 -154907954 + L2 LINE L2 2564 2725 -589 2202 109 14 0 chr3 63129204 63129498 -154907660 + AluSg SINE Alu 1 298 -12 377 259 189 39 chr3 63129498 63129592 -154907566 + L2 LINE L2 2725 2892 -422 211 262 252 0 chr3 63129863 63129970 -154907188 + L2 LINE L2 3172 3305 -8 2368 67 0 0 chr3 63132652 63132957 -154904201 - AluY SINE Alu 0 305 1 2167 132 3 6 chr3 63133276 63133587 -154903571 + AluSx SINE Alu 1 310 -2 2183 78 0 3 chr3 63135070 63135386 -154901772 + AluY SINE Alu 1 315 0 1358 166 0 5 chr3 63137458 63137675 -154899483 + AluJb SINE Alu 85 300 -12 180 208 0 42 chr3 63139136 63139184 -154897974 + L2 LINE L2 3267 3312 -1 346 196 141 0 chr3 63139330 63139422 -154897736 + MIR SINE MIR 158 262 0 384 315 102 26 chr3 63139473 63139756 -154897402 + L2 LINE L2 2790 3104 -168 235 262 24 12 chr3 63139848 63139932 -154897226 - MIR3 SINE MIR -7 201 117 239 259 179 0 chr3 63139957 63140069 -154897089 - MIR SINE MIR -24 238 107 186 316 25 13 chr3 63140457 63140536 -154896622 - MIR SINE MIR -72 190 111 209 209 0 0 chr3 63140866 63140909 -154896249 + CT-rich Low_complexity Low_complexity 1 43 0 1390 242 202 56 chr3 63141347 63142311 -154894847 + L2 LINE L2 2158 3309 -4 315 333 106 0 chr3 63142319 63142460 -154894698 - MIR SINE MIR -86 176 21 757 207 67 0 chr3 63142849 63143013 -154894145 + AluJb SINE Alu 137 311 -1 24 0 0 0 chr3 63143013 63143037 -154894121 + AT_rich Low_complexity Low_complexity 1 24 0 241 282 182 0 chr3 63143270 63143380 -154893778 - L2 LINE L2 0 3313 3184 193 225 0 0 chr3 63143379 63143419 -154893739 - L2 LINE L2 -1074 2240 2201 * 1747 125 68 0 chr3 63143483 63143762 -154893396 - AluSx SINE Alu -14 298 1 22 70 0 0 chr3 63144112 63144155 -154893003 + AT_rich Low_complexity Low_complexity 1 43 0 407 279 34 95 chr3 63144891 63145080 -154892078 - MER102a DNA MER1_type -1087 330 160 2299 91 3 0 chr3 63145080 63145366 -154891792 - AluSc SINE Alu -21 288 2 407 279 34 95 chr3 63145366 63145438 -154891720 - MER102a DNA MER1_type -1257 160 85 185 226 158 38 chr3 63145917 63146050 -154891108 + L2 LINE L2 2328 2476 -838 2238 83 30 3 chr3 63147608 63147908 -154889250 + AluY SINE Alu 1 308 -3 2558 139 19 11 chr3 63147958 63148425 -154888733 - L1MB3 LINE L1 -37 6146 5676 442 259 21 63 chr3 63150053 63150196 -154886962 + MIR SINE MIR 8 144 -118 331 320 127 33 chr3 63151364 63151545 -154885613 + L2 LINE L2 2864 3061 -252 643 306 52 92 chr3 63151804 63152526 -154884632 + L2 LINE L2 2580 3272 0 1088 155 97 45 chr3 63153155 63153445 -154883713 + MER33 DNA MER1_type 19 323 -1 255 191 0 0 chr3 63153465 63153512 -154883646 + L2 LINE L2 3266 3312 -1 423 172 58 0 chr3 63153527 63153614 -154883544 - MIR SINE MIR 0 262 171 1029 202 78 4 chr3 63153620 63153863 -154883295 - MIR SINE MIR 0 262 2 287 296 173 0 chr3 63154016 63154178 -154882980 - MLT1K LTR MaLR -319 269 80 405 0 0 0 chr3 63154752 63154797 -154882361 + (CA)n Simple_repeat Simple_repeat 2 46 0 225 0 0 0 chr3 63155610 63155635 -154881523 + (T)n Simple_repeat Simple_repeat 1 25 0 606 225 193 7 chr3 63156819 63157099 -154880059 + L1ME4a LINE L1 5589 5920 -201 294 186 21 31 chr3 63157142 63157239 -154879919 + L1ME4a LINE L1 6025 6120 -1 2261 113 0 10 chr3 63157261 63157571 -154879587 + AluSx SINE Alu 1 307 -5 237 196 0 0 chr3 63157796 63157852 -154879306 + (TA)n Simple_repeat Simple_repeat 1 56 0 350 292 0 0 chr3 63157905 63157994 -154879164 - L1MC4 LINE L1 -1340 6702 6614 310 261 34 11 chr3 63157918 63158006 -154879152 + L1MC4 LINE L1 6614 6703 -1339 * 25 0 0 0 chr3 63158248 63158273 -154878885 + AT_rich Low_complexity Low_complexity 1 25 0 855 253 35 42 chr3 63159700 63159985 -154877173 - Charlie8 DNA MER1_type -2133 284 2 1407 226 64 35 chr3 63160183 63160669 -154876489 + LTR24B LTR ERV1 70 569 -7 939 201 77 41 chr3 63160675 63161039 -154876119 - L1MC5 LINE L1 -76 7885 7509 1041 168 84 0 chr3 63161057 63161260 -154875898 - MER41C LTR ERV1 0 554 335 261 210 0 34 chr3 63161278 63161454 -154875704 + (TA)n Simple_repeat Simple_repeat 1 170 0 1975 130 34 23 chr3 63161454 63161807 -154875351 - MER41C LTR ERV1 -197 357 1 24 32 0 0 chr3 63161813 63161844 -154875314 + AT_rich Low_complexity Low_complexity 1 31 0 2461 78 0 31 chr3 63161999 63162319 -154874839 - AluY SINE Alu -1 310 1 4190 221 63 55 chr3 63162390 63162523 -154874635 + L1MB7 LINE L1 8 138 -6508 5122 53 30 2 chr3 63162523 63163165 -154873993 - PABL_A LTR ERV1 0 660 1 4190 221 63 55 chr3 63163165 63164213 -154872945 + L1MB7 LINE L1 138 1176 -5470 1897 159 9 44 chr3 63164213 63164533 -154872625 + AluJb SINE Alu 1 309 -3 4190 221 63 55 chr3 63164533 63164548 -154872610 + L1MB7 LINE L1 1176 1189 -5457 206 0 69 0 chr3 63164548 63164577 -154872581 + (CAAAG)n Simple_repeat Simple_repeat 3 33 0 4190 221 63 55 chr3 63164577 63164599 -154872559 + L1MB7 LINE L1 1189 1209 -5437 2207 149 0 0 chr3 63164599 63164908 -154872250 + AluSc SINE Alu 1 309 0 4190 221 63 55 chr3 63164908 63165714 -154871444 + L1MB7 LINE L1 1209 2060 -4586 1151 199 170 52 chr3 63165721 63166162 -154870996 - MLT1D LTR MaLR 0 505 13 6081 214 72 32 chr3 63166225 63167492 -154869666 + L1MB7 LINE L1 2212 3427 -3255 1012 202 0 0 chr3 63167492 63167665 -154869493 + FAM SINE Alu 1 173 -2 6081 214 72 32 chr3 63167665 63168847 -154868311 + L1MB7 LINE L1 3427 4561 -2121 2371 85 7 0 chr3 63168847 63169152 -154868006 + AluSx SINE Alu 1 307 -5 6081 214 72 32 chr3 63169152 63169212 -154867946 + L1MB7 LINE L1 4561 4617 -2065 1739 155 0 38 chr3 63169212 63169502 -154867656 + AluJb SINE Alu 2 280 -32 213 39 0 0 chr3 63169502 63169528 -154867630 + (TAA)n Simple_repeat Simple_repeat 1 26 0 6081 214 72 32 chr3 63169528 63169784 -154867374 + L1MB7 LINE L1 4617 4861 -1821 1730 175 14 7 chr3 63169784 63170070 -154867088 - AluJb SINE Alu -20 292 5 6081 214 72 32 chr3 63170070 63171505 -154865653 + L1MB7 LINE L1 4861 6650 -32 2513 185 82 40 chr3 63171681 63172028 -154865130 - MER50 LTR ERV1 0 734 403 1889 69 7 69 chr3 63172028 63172302 -154864856 - AluY SINE Alu -16 295 39 2513 185 82 40 chr3 63172302 63172650 -154864508 - MER50 LTR ERV1 -331 403 10 2224 130 21 45 chr3 63172690 63173126 -154864032 + MER4A LTR ERV1 1 434 -163 559 70 0 0 chr3 63173123 63173194 -154863964 + MER4A LTR ERV1 355 425 -239 * 387 137 59 21 chr3 63173210 63173366 -154863792 + MER4C LTR ERV1 277 465 0 2803 158 13 28 chr3 63173705 63174250 -154862908 - L1MB3 LINE L1 0 6183 5647 1703 158 85 16 chr3 63174250 63174567 -154862591 + MER44D DNA MER2_type 1 609 0 1768 146 47 30 chr3 63174567 63174929 -154862229 - L1MB3 LINE L1 -535 5648 5281 380 185 15 0 chr3 63225337 63225402 -154811756 + MER2 DNA MER2_type 280 345 0 1043 185 170 75 chr3 63225416 63225805 -154811353 + MLT1K LTR MaLR 163 588 0 234 62 0 0 chr3 63226435 63226467 -154810691 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 426 296 48 16 chr3 63226839 63227028 -154810130 - MLT1K LTR MaLR -381 207 13 270 242 61 5 chr3 63227199 63227287 -154809871 - MLT1J1 LTR MaLR -2 444 361 757 225 11 37 chr3 63227384 63227571 -154809587 - MLT1J1 LTR MaLR -233 213 32 1790 125 67 17 chr3 63227600 63227897 -154809261 + AluSx SINE Alu 1 312 0 507 151 0 13 chr3 63228058 63228323 -154808835 + AluSx SINE Alu 1 308 -2 267 227 15 15 chr3 63228478 63228544 -154808614 - L1ME1 LINE L1 -10 6156 6091 509 287 171 14 chr3 63228795 63229011 -154808147 + MIR SINE MIR 13 262 0 2147 115 3 0 chr3 63230905 63231193 -154805965 - AluSx SINE Alu -23 289 1 220 213 0 21 chr3 63231291 63231385 -154805773 + (CAT)n Simple_repeat Simple_repeat 3 94 0 758 240 156 57 chr3 63233008 63233374 -154803784 - MLT1I LTR MaLR -5 404 3 22 0 0 0 chr3 63233614 63233636 -154803522 + AT_rich Low_complexity Low_complexity 1 22 0 343 206 31 131 chr3 63234362 63234522 -154802636 - L1ME4a LINE L1 -11 6110 5967 438 20 0 0 chr3 63234527 63234578 -154802580 + (TG)n Simple_repeat Simple_repeat 2 52 0 612 249 58 11 chr3 63234779 63234968 -154802190 - MLT1L LTR MaLR -9 606 409 332 330 104 58 chr3 63235320 63235753 -154801405 + L2 LINE L2 2815 3267 -5 2283 95 24 0 chr3 63236365 63236659 -154800499 + AluSx SINE Alu 1 301 -11 1048 59 0 22 chr3 63236755 63236891 -154800267 - L1PA5 LINE L1 0 6154 6022 392 270 87 32 chr3 63236938 63237123 -154800035 - L1ME4a LINE L1 -305 5816 5622 24 53 0 0 chr3 63237758 63237796 -154799362 + AT_rich Low_complexity Low_complexity 1 38 0 652 248 5 61 chr3 63237797 63237917 -154799241 - MIR SINE MIR -1 261 155 2344 105 0 6 chr3 63237917 63238231 -154798927 - AluSx SINE Alu 0 312 1 652 248 5 61 chr3 63238231 63238308 -154798850 - MIR SINE MIR -107 155 75 1201 239 65 80 chr3 63238355 63238819 -154798339 + LTR16A1 LTR ERVL 1 457 0 234 336 136 9 chr3 63238884 63238994 -154798164 + MIR3 SINE MIR 63 186 -22 313 270 88 29 chr3 63239336 63239473 -154797685 - L2 LINE L2 -1356 1958 1814 2432 84 0 0 chr3 63239855 63240151 -154797007 + AluSc SINE Alu 1 296 -13 402 280 130 35 chr3 63240163 63240363 -154796795 - MIR SINE MIR -21 241 23 336 24 0 0 chr3 63240429 63240470 -154796688 + (TG)n Simple_repeat Simple_repeat 1 41 0 481 307 73 28 chr3 63241292 63241471 -154795687 + MIR SINE MIR 76 262 0 447 281 67 7 chr3 63241518 63241653 -154795505 + MIR3 SINE MIR 20 162 -46 231 319 59 63 chr3 63241801 63242039 -154795119 - L2 LINE L2 -9 3263 3027 722 219 6 37 chr3 63243135 63243299 -154793859 - MER63B DNA MER1_type -1 435 277 602 154 27 16 chr3 63243300 63243448 -154793710 - 7SK RNA RNA 0 193 1 1026 205 153 0 chr3 63243448 63243702 -154793456 - MER63B DNA MER1_type -143 293 1 345 305 55 8 chr3 63244232 63244360 -154792798 - L2 LINE L2 0 3313 3180 193 309 88 0 chr3 63244458 63244526 -154792632 - MIR SINE MIR -105 157 84 432 220 34 25 chr3 63244901 63245019 -154792139 - MIR3 SINE MIR -7 201 83 1918 226 103 79 chr3 63245392 63245451 -154791707 + MER20B DNA MER1_type 1 57 -726 2300 101 3 0 chr3 63245451 63245747 -154791411 - AluSq SINE Alu -14 299 3 1918 226 103 79 chr3 63245747 63246398 -154790760 + MER20B DNA MER1_type 57 728 -55 281 262 214 0 chr3 63246455 63246558 -154790600 + L1MC4a LINE L1 5532 5656 -2152 2027 140 73 25 chr3 63246559 63246917 -154790241 - THE1C LTR MaLR 0 375 1 11180 114 29 8 chr3 63246917 63248464 -154788694 - THE1C-int LTR MaLR 0 1580 1 1806 137 81 27 chr3 63248464 63248799 -154788359 - THE1C LTR MaLR 0 375 23 996 249 102 47 chr3 63248807 63249222 -154787936 + L1MC4a LINE L1 5670 6061 -1747 183 80 0 0 chr3 63249222 63249247 -154787911 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2264 73 0 4 chr3 63249253 63249527 -154787631 - AluSg SINE Alu -37 273 1 996 249 102 47 chr3 63249527 63249577 -154787581 + L1MC4a LINE L1 6065 6168 -1640 251 215 0 108 chr3 63249707 63249800 -154787358 - MER5A DNA MER1_type -72 117 35 500 316 17 11 chr3 63249862 63250039 -154787119 + MIR SINE MIR 23 200 -62 805 282 96 17 chr3 63250151 63250749 -154786409 + L2 LINE L2 2548 3195 -118 1969 134 3 0 chr3 63251490 63251773 -154785385 + AluJb SINE Alu 1 284 -28 2201 112 0 7 chr3 63253108 63253402 -154783756 + AluSx SINE Alu 1 292 -20 242 268 0 10 chr3 63254096 63254193 -154782965 + GA-rich Low_complexity Low_complexity 3 98 0 1497 294 74 22 chr3 63254573 63255402 -154781756 + HAL1b LINE L1 53 924 -424 189 0 0 0 chr3 63255644 63255665 -154781493 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1170 150 10 30 chr3 63255751 63255951 -154781207 - AluJb SINE Alu -15 297 102 273 275 90 49 chr3 63256093 63256698 -154780460 + L1M4 LINE L1 2300 3032 -3114 588 276 30 30 chr3 63256857 63257121 -154780037 + L1M4 LINE L1 3682 3945 -2201 23 0 0 0 chr3 63257175 63257198 -154779960 + AT_rich Low_complexity Low_complexity 1 23 0 34 0 0 0 chr3 63257442 63257476 -154779682 + AT_rich Low_complexity Low_complexity 1 34 0 296 282 104 81 chr3 63257767 63258423 -154778735 + L1M4 LINE L1 4033 4703 -1443 2257 171 40 60 chr3 63258497 63258966 -154778192 + LTR42 LTR ERVL 25 484 -11 321 283 79 105 chr3 63259056 63259409 -154777749 + L1M4 LINE L1 4781 5124 -1022 1547 172 3 56 chr3 63259545 63259847 -154777311 + AluJb SINE Alu 4 289 -23 2420 129 0 18 chr3 63260242 63260584 -154776574 - MER1B DNA MER1_type 0 337 2 5493 216 87 52 chr3 63260671 63260715 -154776443 + L1M4 LINE L1 3303 3344 -2802 2258 109 0 10 chr3 63260715 63261028 -154776130 + AluSg SINE Alu 1 310 0 5493 216 87 52 chr3 63261028 63261114 -154776044 + L1M4 LINE L1 3344 3426 -2720 2481 87 0 0 chr3 63261114 63261423 -154775735 + AluSg SINE Alu 1 309 -1 5493 216 87 52 chr3 63261423 63262379 -154774779 + L1M4 LINE L1 3426 4347 -1799 2209 145 119 33 chr3 63262379 63262420 -154774738 - MSTA LTR MaLR 0 428 392 2429 71 0 0 chr3 63262420 63262714 -154774444 + AluY SINE Alu 1 294 -17 2209 145 119 33 chr3 63262714 63263066 -154774092 - MSTA LTR MaLR -36 392 1 5493 216 87 52 chr3 63263066 63264007 -154773151 + L1M4 LINE L1 4347 5403 -743 2059 123 0 32 chr3 63264695 63265005 -154772153 - AluSx SINE Alu -12 300 1 521 310 5 46 chr3 63266281 63266497 -154770661 - MIR SINE MIR -29 233 27 182 314 128 29 chr3 63266514 63266718 -154770440 - L2 LINE L2 -225 3047 2824 2357 55 7 3 chr3 63267656 63267948 -154769210 + AluY SINE Alu 1 293 -18 1674 137 115 0 chr3 63267962 63268240 -154768918 + AluJo SINE Alu 1 310 -2 1941 135 55 0 chr3 63268243 63268532 -154768626 + AluSx SINE Alu 1 305 -7 418 308 77 16 chr3 63269505 63269687 -154767471 + MIR SINE MIR 20 212 -50 462 255 50 0 chr3 63269742 63269883 -154767275 + L2 LINE L2 3164 3311 -2 1887 164 76 30 chr3 63269911 63270307 -154766851 + MLT2D LTR ERVL 1 414 0 194 259 0 0 chr3 63270501 63270555 -154766603 - MIR SINE MIR -128 134 81 503 274 243 14 chr3 63270559 63270855 -154766303 + MLT1H LTR MaLR 9 372 -177 242 267 17 0 chr3 63272206 63272266 -154764892 + GA-rich Low_complexity Low_complexity 3 63 0 610 253 159 0 chr3 63272270 63272452 -154764706 - MIR SINE MIR -15 247 37 417 231 125 0 chr3 63272770 63272874 -154764284 - L2 LINE L2 0 3313 3197 24 0 0 0 chr3 63273059 63273083 -154764075 + AT_rich Low_complexity Low_complexity 1 24 0 2332 53 7 4 chr3 63273369 63273678 -154763480 + AluY SINE Alu 1 310 0 552 282 150 0 chr3 63274293 63274513 -154762645 - MIR SINE MIR -6 256 4 379 78 0 0 chr3 63274527 63274578 -154762580 - MADE1 DNA Mariner 0 80 30 1681 256 93 14 chr3 63274590 63275083 -154762075 - MLT1E LTR MaLR -2 591 60 1789 164 0 7 chr3 63275161 63275447 -154761711 - AluJo SINE Alu -24 288 5 332 287 9 17 chr3 63275877 63275992 -154761166 - L1MC4a LINE L1 -1913 5895 5782 370 293 58 23 chr3 63276701 63276875 -154760283 - MIR SINE MIR -13 249 70 254 345 21 7 chr3 63277005 63277150 -154760008 + L3b LINE CR1 1105 1251 -332 235 284 202 9 chr3 63277252 63277361 -154759797 - L2 LINE L2 -1 3312 3183 325 266 217 7 chr3 63277490 63277633 -154759525 - L2 LINE L2 -267 3046 2874 347 198 149 41 chr3 63278160 63278281 -154758877 - MIR SINE MIR -59 149 16 283 295 98 16 chr3 63280159 63280281 -154756877 - MIR SINE MIR -128 134 3 187 293 0 0 chr3 63280440 63280498 -154756660 + MIR3 SINE MIR 131 188 -20 726 272 94 38 chr3 63280568 63280994 -154756164 + MLT1J2 LTR MaLR 1 450 0 1188 134 6 0 chr3 63281073 63281245 -154755913 + MER2 DNA MER2_type 1 173 -172 458 250 181 20 chr3 63283489 63283693 -154753465 + MIR SINE MIR 18 254 -8 1681 179 6 16 chr3 63283764 63284076 -154753082 - AluJo SINE Alu -3 309 1 23 0 0 0 chr3 63284109 63284132 -154753026 + AT_rich Low_complexity Low_complexity 1 23 0 1789 82 44 118 chr3 63284141 63284507 -154752651 - L1MA5A LINE L1 -5 6292 5954 1236 118 104 57 chr3 63284514 63284725 -154752433 - AluSq SINE Alu -89 224 4 504 80 27 0 chr3 63284728 63284803 -154752355 - L1MA5A LINE L1 -327 5970 5894 232 224 17 0 chr3 63284907 63284965 -154752193 + MIR SINE MIR 126 184 -78 875 259 65 43 chr3 63285557 63285909 -154751249 + LTR10B LTR ERV1 188 547 0 1226 206 28 118 chr3 63285909 63286331 -154750827 + HERVI LTR ERV1 2 385 -7400 1308 258 32 10 chr3 63287517 63288072 -154749086 + HERVI LTR ERV1 418 1023 -6762 418 180 324 18 chr3 63288098 63288209 -154748949 + HERVI LTR ERV1 926 1070 -5579 794 253 28 6 chr3 63288209 63288387 -154748771 + HERVI LTR ERV1 1545 1726 -6059 281 286 67 9 chr3 63288388 63288420 -154748738 + HERVI LTR ERV1 1222 1251 -7375 2400 69 0 38 chr3 63288420 63288737 -154748421 + AluY SINE Alu 2 306 -5 281 286 67 9 chr3 63288737 63288809 -154748349 + HERVI LTR ERV1 1251 1332 -7294 * 2357 279 26 8 chr3 63288803 63289453 -154747705 + HERVI LTR ERV1 1728 2389 -5396 * 5106 275 14 24 chr3 63289420 63290825 -154746333 + HERVI LTR ERV1 4565 5956 -1829 6124 238 31 10 chr3 63290980 63292578 -154744580 + HERVI LTR ERV1 5040 7784 0 847 249 68 48 chr3 63292653 63292990 -154744168 + LTR10B LTR ERV1 188 531 -16 1615 163 153 10 chr3 63293093 63293400 -154743758 + MSTA LTR MaLR 70 420 -8 1696 100 0 0 chr3 63293400 63293629 -154743529 - L1PA12 LINE L1 -260 5908 5680 2220 123 0 0 chr3 63293629 63293930 -154743228 - AluSq SINE Alu -12 301 1 243 209 209 0 chr3 63294936 63295003 -154742155 + FLAM SINE Alu 44 124 -9 296 294 34 34 chr3 63295018 63295137 -154742021 - LTR16B LTR ERVL -264 200 82 234 346 47 0 chr3 63296225 63296352 -154740806 - MIR SINE MIR -74 188 56 219 158 59 129 chr3 63296447 63296548 -154740610 + MER5B DNA MER1_type 75 168 -10 1004 259 99 80 chr3 63296784 63297337 -154739821 + MLT1K LTR MaLR 25 588 0 263 242 0 15 chr3 63297409 63297475 -154739683 - L2 LINE L2 -3 3269 3205 266 308 44 0 chr3 63297650 63297741 -154739417 + L2 LINE L2 3175 3269 -3 228 67 0 0 chr3 63298155 63298185 -154738973 + (CA)n Simple_repeat Simple_repeat 1 30 0 949 240 100 65 chr3 63298221 63298567 -154738591 - L1ME4a LINE L1 -246 5875 5514 207 100 0 0 chr3 63298567 63298597 -154738561 + (T)n Simple_repeat Simple_repeat 1 30 0 415 335 118 0 chr3 63299434 63299646 -154737512 + MIR SINE MIR 20 256 -6 235 279 135 0 chr3 63299660 63299771 -154737387 + MIR SINE MIR 131 256 -6 1648 152 41 11 chr3 63299801 63300071 -154737087 + AluJo SINE Alu 1 278 -34 2109 112 3 53 chr3 63300125 63300447 -154736711 - AluSx SINE Alu -6 306 1 233 271 65 56 chr3 63301803 63301910 -154735248 - L2 LINE L2 -18 3295 3188 279 105 0 0 chr3 63302377 63302415 -154734743 - MER65A LTR ERV1 0 445 408 439 82 96 0 chr3 63302421 63302494 -154734664 + MER65A LTR ERV1 366 445 0 246 62 0 0 chr3 63302495 63302527 -154734631 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 2331 63 0 21 chr3 63304426 63304759 -154732399 + AluY SINE Alu 6 332 0 2258 211 86 30 chr3 63305392 63305516 -154731642 + MLT1E2 LTR MaLR 1 117 -509 2100 74 96 0 chr3 63305516 63305786 -154731372 + AluSc SINE Alu 1 296 -13 2258 211 86 30 chr3 63305786 63306254 -154730904 + MLT1E2 LTR MaLR 117 626 0 2572 57 0 0 chr3 63306445 63306746 -154730412 - AluY SINE Alu -10 301 1 469 317 45 31 chr3 63309131 63309355 -154727803 + MLT1K LTR MaLR 10 236 -352 1089 91 23 0 chr3 63309984 63310160 -154726998 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 577 123 19 9 chr3 63310162 63310268 -154726890 + CT-rich Low_complexity Low_complexity 1 107 0 911 201 6 0 chr3 63310268 63310432 -154726726 - FRAM SINE Alu -1 165 1 557 228 63 33 chr3 63310720 63310995 -154726163 + L1MC5 LINE L1 7547 7774 -187 772 189 8 0 chr3 63311167 63311299 -154725859 - FLAM_A SINE Alu 0 133 1 285 233 241 23 chr3 63311655 63311788 -154725370 - L1ME4a LINE L1 -16 6105 5944 704 200 56 17 chr3 63311983 63311997 -154725161 - AluJo SINE Alu -7 305 293 3872 135 19 47 chr3 63311997 63312725 -154724433 - L1MA6 LINE L1 0 6300 5593 704 200 56 17 chr3 63312725 63312890 -154724268 - AluJo SINE Alu -19 293 119 322 51 6 0 chr3 63312906 63312956 -154724202 - L1M4 LINE L1 -2166 3980 3929 22 0 0 0 chr3 63312960 63312982 -154724176 + AT_rich Low_complexity Low_complexity 1 22 0 2624 220 77 33 chr3 63313237 63313961 -154723197 - L1ME2 LINE L1 -6 6158 5403 2137 116 3 3 chr3 63314082 63314374 -154722784 - AluSx SINE Alu -20 292 1 207 204 23 0 chr3 63314956 63315000 -154722158 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 342 175 107 68 chr3 63315465 63315568 -154721590 + L1MB5 LINE L1 6059 6165 -9 1955 134 38 29 chr3 63315624 63315937 -154721221 + THE1B LTR MaLR 1 316 -48 293 237 95 41 chr3 63316169 63316338 -154720820 - L1ME4a LINE L1 -2 6119 5942 398 337 12 0 chr3 63316380 63316543 -154720615 - MER103 DNA DNA -1 165 1 1791 156 13 25 chr3 63316547 63316862 -154720296 - AluJo SINE Alu 0 312 2 260 297 76 8 chr3 63316989 63317107 -154720051 - L1ME4a LINE L1 -271 5850 5725 824 199 0 7 chr3 63318382 63318528 -154718630 - FRAM SINE Alu -15 161 17 21 57 0 0 chr3 63318735 63318770 -154718388 + AT_rich Low_complexity Low_complexity 1 35 0 507 216 22 30 chr3 63319024 63319158 -154718000 - FLAM_C SINE Alu 0 133 1 265 280 53 116 chr3 63319268 63319493 -154717665 - L2 LINE L2 -18 3254 3044 250 387 32 0 chr3 63319658 63319751 -154717407 - MIR SINE MIR -131 131 36 235 246 18 0 chr3 63320672 63320729 -154716429 - L2 LINE L2 0 3272 3215 594 199 80 26 chr3 63320730 63320881 -154716277 + MER45A DNA AcHobo 1 159 -19 280 275 0 14 chr3 63320889 63320958 -154716200 - L2 LINE L2 -69 3203 3136 458 236 107 28 chr3 63321319 63321497 -154715661 - L1MC4 LINE L1 0 8042 7851 1680 160 29 73 chr3 63321500 63321590 -154715568 + MLT1A1 LTR MaLR 1 93 -272 6111 84 26 10 chr3 63321590 63322060 -154715098 + L1PA11 LINE L1 5077 5538 -636 261 0 0 0 chr3 63322060 63322089 -154715069 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6111 84 26 10 chr3 63322089 63322700 -154714458 + L1PA11 LINE L1 5538 6140 -34 2429 133 8 3 chr3 63322700 63323062 -154714096 - THE1B LTR MaLR 0 364 1 6111 84 26 10 chr3 63323062 63323098 -154714060 + L1PA11 LINE L1 6140 6174 0 1680 160 29 73 chr3 63323098 63323389 -154713769 + MLT1A1 LTR MaLR 93 365 0 3196 190 80 89 chr3 63323394 63324431 -154712727 - L1MC4 LINE L1 -195 7847 6820 261 363 81 8 chr3 63325470 63325594 -154711564 - L2 LINE L2 -1 3312 3180 2142 110 3 10 chr3 63325629 63325938 -154711220 + AluSq SINE Alu 1 307 -6 1819 146 7 3 chr3 63325949 63326236 -154710922 + AluSx SINE Alu 1 288 -24 1943 129 161 8 chr3 63326821 63327209 -154709949 - MSTA LTR MaLR 0 428 1 396 308 51 35 chr3 63327348 63327663 -154709495 + L1MC4a LINE L1 5617 5936 -1872 978 204 57 11 chr3 63327909 63328189 -154708969 - L1MC5 LINE L1 -160 7801 7509 * 1114 232 11 29 chr3 63328179 63328455 -154708703 - L1MC4 LINE L1 -2125 5683 5413 1463 142 4 0 chr3 63328589 63328821 -154708337 - AluJb SINE Alu -11 301 69 199 288 0 50 chr3 63329247 63329327 -154707831 - MIR SINE MIR -74 188 113 425 345 28 43 chr3 63329683 63329936 -154707222 + MIR SINE MIR 11 256 -6 228 281 156 31 chr3 63329956 63329979 -154707179 - MIR3 SINE MIR -12 196 177 3262 114 21 14 chr3 63329979 63330463 -154706695 - LTR45B LTR ERV1 0 489 3 228 281 156 31 chr3 63330463 63330599 -154706559 - MIR3 SINE MIR -31 177 17 189 0 0 0 chr3 63330939 63330960 -154706198 + (CAA)n Simple_repeat Simple_repeat 2 22 0 230 176 20 20 chr3 63331301 63331352 -154705806 + GA-rich Low_complexity Low_complexity 2 52 0 544 305 43 23 chr3 63331785 63332041 -154705117 - MIR SINE MIR -1 261 1 359 311 98 37 chr3 63332160 63332404 -154704754 + MLT1J2 LTR MaLR 5 227 -223 2414 175 10 0 chr3 63332656 63333044 -154704114 - MER47B DNA MER2_type 0 418 27 2628 209 88 43 chr3 63333655 63333670 -154703488 + L1MB4 LINE L1 5260 5273 -907 824 157 0 15 chr3 63333670 63333804 -154703354 + FLAM_C SINE Alu 2 133 0 2628 209 88 43 chr3 63333804 63334610 -154702548 + L1MB4 LINE L1 5273 6124 -56 1049 186 10 0 chr3 63334622 63334826 -154702332 - AluJb SINE Alu -13 299 94 827 295 68 56 chr3 63334969 63335550 -154701608 + L2 LINE L2 2710 3304 -9 1841 157 16 0 chr3 63336081 63336387 -154700771 + AluJo SINE Alu 1 311 -1 326 274 29 0 chr3 63337347 63337449 -154699709 + L1ME LINE L1 5394 5498 -623 2363 63 0 3 chr3 63337634 63337935 -154699223 - AluSc SINE Alu -9 300 1 457 222 127 40 chr3 63339012 63339138 -154698020 + MIR SINE MIR 108 244 -18 200 338 73 37 chr3 63341183 63341319 -154695839 + MIR SINE MIR 13 145 -63 21 0 0 0 chr3 63341972 63341993 -154695165 + GC_rich Low_complexity Low_complexity 1 21 0 236 241 157 0 chr3 63343049 63343132 -154694026 + Zaphod DNA AcHobo 3935 4030 -1 1403 89 39 0 chr3 63343351 63343576 -154693582 + AluSc SINE Alu 69 301 0 1828 154 0 14 chr3 63343996 63344289 -154692869 + AluJo SINE Alu 1 289 -23 324 0 0 0 chr3 63344289 63344325 -154692833 + (CA)n Simple_repeat Simple_repeat 2 37 0 271 250 79 0 chr3 63344544 63344620 -154692538 - MIR SINE MIR -92 116 35 261 379 17 11 chr3 63344673 63344847 -154692311 + (ATGGTG)n Simple_repeat Simple_repeat 3 177 0 * 410 344 6 6 chr3 63344754 63344934 -154692224 + (TGG)n Simple_repeat Simple_repeat 1 180 0 468 326 174 45 chr3 63345578 63346094 -154691064 + L3 LINE CR1 598 1180 -397 262 257 40 0 chr3 63346168 63346242 -154690916 - MLT1L LTR MaLR -32 583 507 349 300 106 55 chr3 63346246 63346519 -154690639 + L3 LINE CR1 1289 1575 -2 2255 65 3 3 chr3 63348219 63348510 -154688648 + AluY SINE Alu 1 291 -20 626 202 139 67 chr3 63348815 63349023 -154688135 + MER58A DNA MER1_type 1 223 -1 224 248 181 45 chr3 63349042 63349175 -154687983 + MER5A DNA MER1_type 23 173 -16 402 196 31 10 chr3 63349816 63349913 -154687245 + MER103 DNA DNA 2 100 -66 263 163 291 81 chr3 63350009 63350095 -154687063 - MER81 DNA DNA -10 104 1 183 388 0 12 chr3 63350195 63350280 -154686878 + L2 LINE L2 3189 3272 0 368 167 26 13 chr3 63350348 63350426 -154686732 - MER116 DNA Mariner -1 79 1 22 35 0 0 chr3 63352211 63352240 -154684918 + GC_rich Low_complexity Low_complexity 1 29 0 286 320 0 0 chr3 63353148 63353226 -154683932 + C-rich Low_complexity Low_complexity 1 78 0 26 50 0 0 chr3 63353371 63353411 -154683747 + GC_rich Low_complexity Low_complexity 1 40 0 288 0 0 0 chr3 63355899 63355931 -154681227 + (CA)n Simple_repeat Simple_repeat 2 33 0 607 209 90 8 chr3 63360715 63360849 -154676309 - MER45A DNA AcHobo 0 178 34 565 283 0 0 chr3 63361166 63361318 -154675840 - MIR SINE MIR -26 236 85 230 186 58 70 chr3 63361373 63361459 -154675699 + MIR SINE MIR 108 192 -70 561 250 90 35 chr3 63361512 63361712 -154675446 + MIR SINE MIR 21 231 -31 490 336 65 9 chr3 63363417 63363649 -154673509 + MIR SINE MIR 17 261 -1 395 231 47 107 chr3 63363864 63364063 -154673095 - MIR SINE MIR -32 176 25 280 303 184 0 chr3 63364527 63364679 -154672479 + MIR SINE MIR 77 256 -6 588 294 11 11 chr3 63367393 63367573 -154669585 - MER5A DNA MER1_type -9 180 1 594 234 65 0 chr3 63368220 63368374 -154668784 + MER112 DNA MER1_type 1 164 -96 210 150 0 0 chr3 63368406 63368446 -154668712 + (CTACT)n Simple_repeat Simple_repeat 3 42 0 532 313 49 25 chr3 63368626 63368869 -154668289 - MIR SINE MIR 0 262 14 257 224 306 0 chr3 63369341 63369439 -154667719 - MIR SINE MIR -75 187 60 180 324 49 0 chr3 63369646 63369748 -154667410 + MIR3 SINE MIR 15 121 -87 436 259 166 36 chr3 63370602 63370795 -154666363 + MIR SINE MIR 33 250 -12 386 301 0 10 chr3 63371246 63371349 -154665809 + MIR SINE MIR 14 115 -147 225 302 36 50 chr3 63371379 63371518 -154665640 + L2 LINE L2 3177 3313 0 182 209 23 23 chr3 63371542 63371585 -154665573 - MIR SINE MIR -65 143 101 270 136 0 0 chr3 63371717 63371761 -154665397 + (TG)n Simple_repeat Simple_repeat 1 44 0 355 323 70 70 chr3 63372488 63372801 -154664357 - L2 LINE L2 0 3272 2960 258 32 0 0 chr3 63373239 63373270 -154663888 + (ATG)n Simple_repeat Simple_repeat 2 32 0 830 315 12 16 chr3 63373272 63373526 -154663632 - MIR SINE MIR -7 255 3 318 216 75 110 chr3 63374037 63374146 -154663012 - L1ME4a LINE L1 -11 6110 6012 2296 94 0 0 chr3 63374146 63374454 -154662704 - AluY SINE Alu -3 308 1 318 216 75 110 chr3 63374454 63374571 -154662587 - L1ME4a LINE L1 -109 6012 5892 357 330 58 29 chr3 63374775 63375084 -154662074 - L1ME4a LINE L1 -197 5924 5607 838 262 76 9 chr3 63375266 63375491 -154661667 + MIR SINE MIR 8 247 -15 511 233 96 38 chr3 63376425 63376717 -154660441 - L1MEd LINE L1 -4914 1205 897 266 313 115 26 chr3 63377789 63377981 -154659177 + MIR SINE MIR 33 241 -21 197 159 23 0 chr3 63378104 63378148 -154659010 + CT-rich Low_complexity Low_complexity 3 47 0 718 249 151 0 chr3 63378161 63378386 -154658772 + MIR SINE MIR 4 262 0 1977 112 30 0 chr3 63378454 63378750 -154658408 - AluSg SINE Alu -5 305 1 2199 109 7 0 chr3 63379348 63379650 -154657508 + AluSx SINE Alu 1 304 -8 1091 276 55 39 chr3 63379846 63379921 -154657237 - MER115 DNA AcHobo -238 455 383 288 0 0 0 chr3 63379921 63379953 -154657205 + (CA)n Simple_repeat Simple_repeat 1 32 0 1091 276 55 39 chr3 63379953 63380293 -154656865 - MER115 DNA AcHobo -310 383 33 700 175 12 0 chr3 63380533 63380693 -154656465 + CT-rich Low_complexity Low_complexity 1 162 0 188 209 0 47 chr3 63381224 63381267 -154655891 + MIR SINE MIR 222 262 0 539 194 0 8 chr3 63381476 63381605 -154655553 + (TGGA)n Simple_repeat Simple_repeat 3 130 0 773 192 4 0 chr3 63381617 63381858 -154655300 + (TGGA)n Simple_repeat Simple_repeat 1 242 0 607 222 6 6 chr3 63381885 63382065 -154655093 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 191 175 123 123 chr3 63383053 63383167 -154653991 + L2 LINE L2 3200 3313 0 233 264 92 11 chr3 63383798 63383885 -154653273 + MIR SINE MIR 78 141 -67 287 259 0 0 chr3 63384098 63384152 -154653006 - L2 LINE L2 -2 3270 3217 754 269 90 9 chr3 63384891 63385114 -154652044 - MIR SINE MIR -4 258 18 729 219 65 32 chr3 63385564 63385811 -154651347 + MER113 DNA MER1_type? 80 334 -187 342 276 48 70 chr3 63385838 63386183 -154650975 - MLT1I LTR MaLR -7 402 71 245 284 0 37 chr3 63386478 63386559 -154650599 + Tigger3(Golem) DNA MER2_type 1013 1090 -1939 1271 269 26 3 chr3 63386780 63387092 -154650066 - LTR16C LTR ERVL -19 472 154 1108 218 245 19 chr3 63387178 63387618 -154649540 + MLT1F LTR MaLR 3 533 -9 1639 148 62 88 chr3 63387628 63388028 -154649130 - MLT1B LTR MaLR 0 390 1 2161 92 3 13 chr3 63388162 63388478 -154648680 + AluSp SINE Alu 1 313 0 198 71 0 0 chr3 63388485 63388513 -154648645 + (A)n Simple_repeat Simple_repeat 1 28 0 543 267 67 11 chr3 63389485 63389665 -154647493 + MLT1I LTR MaLR 1 190 -219 229 287 99 40 chr3 63390196 63390297 -154646861 - L2 LINE L2 -8 3305 3199 759 152 134 110 chr3 63390442 63390778 -154646380 - MER69 DNA AcHobo -22 2504 2161 411 244 17 59 chr3 63390779 63390870 -154646288 + MER5B DNA MER1_type 10 97 -81 2056 102 0 3 chr3 63390870 63391180 -154645978 + AluSx SINE Alu 1 309 0 411 244 17 59 chr3 63391180 63391206 -154645952 + MER5B DNA MER1_type 97 123 -55 1530 187 18 12 chr3 63391217 63391549 -154645609 - MER69 DNA AcHobo -353 2173 1840 1023 251 92 0 chr3 63391844 63392159 -154644999 - MER69 DNA AcHobo -882 344 1 256 246 29 0 chr3 63392759 63392828 -154644330 - L2 LINE L2 -2 3270 3200 1191 259 144 28 chr3 63392829 63393265 -154643893 - MLT1G1 LTR MaLR 0 595 109 180 354 46 0 chr3 63393332 63393397 -154643761 - L2 LINE L2 -80 3192 3125 807 283 255 9 chr3 63393401 63393839 -154643319 - L2 LINE L2 -9 3304 2761 255 157 137 0 chr3 63393858 63393909 -154643249 - MLT1I LTR MaLR -17 392 335 756 281 29 10 chr3 63393995 63394234 -154642924 - MLT1I LTR MaLR -93 316 75 224 305 17 0 chr3 63394300 63394359 -154642799 - L2 LINE L2 -562 2752 2693 247 229 29 0 chr3 63394663 63394733 -154642425 + MIR SINE MIR 59 130 -132 409 293 0 71 chr3 63394874 63395014 -154642144 + MIR3 SINE MIR 38 167 -41 252 217 61 104 chr3 63395070 63395185 -154641973 - MER20 DNA MER1_type -109 110 1 952 151 11 89 chr3 63395389 63395674 -154641484 + AluJo SINE Alu 1 312 0 23 0 0 0 chr3 63396393 63396416 -154640742 + AT_rich Low_complexity Low_complexity 1 23 0 272 286 0 109 chr3 63397545 63397737 -154639421 + L3 LINE CR1 1403 1573 -4 193 283 50 0 chr3 63398063 63398123 -154639035 + L2 LINE L2 3251 3313 0 241 265 0 20 chr3 63399356 63399405 -154637753 - L2 LINE L2 -88 3184 3137 207 0 0 0 chr3 63399405 63399428 -154637730 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 561 192 0 0 chr3 63399495 63399620 -154637538 + (TG)n Simple_repeat Simple_repeat 1 125 0 270 250 42 42 chr3 63399621 63399717 -154637441 - L2 LINE L2 -213 3100 3005 2095 112 0 7 chr3 63399752 63400055 -154637103 + AluSx SINE Alu 1 301 -11 243 173 0 0 chr3 63400444 63400496 -154636662 + CT-rich Low_complexity Low_complexity 2 53 0 198 0 0 0 chr3 63400983 63401005 -154636153 + (T)n Simple_repeat Simple_repeat 1 22 0 21 57 0 0 chr3 63401370 63401405 -154635753 + AT_rich Low_complexity Low_complexity 1 35 0 10226 54 95 1 chr3 63404805 63406165 -154630993 - L1P LINE L1 -4080 2066 580 376 291 47 35 chr3 63406393 63406565 -154630593 + Charlie8 DNA MER1_type 92 265 -2152 1274 196 43 4 chr3 63406672 63406927 -154630231 + L1M4 LINE L1 4729 4993 -1153 2067 78 14 7 chr3 63406927 63407220 -154629938 + AluSq SINE Alu 1 295 -18 535 204 0 0 chr3 63407235 63407323 -154629835 + AluJ/FLAM SINE Alu 2 89 -223 256 347 68 57 chr3 63407597 63407773 -154629385 + L3 LINE CR1 298 475 -1102 232 250 28 28 chr3 63408220 63408328 -154628830 + C-rich Low_complexity Low_complexity 5 112 0 1824 161 0 3 chr3 63409206 63409523 -154627635 - L1PA13 LINE L1 -6 6157 5842 331 176 7 61 chr3 63409572 63409720 -154627438 + CT-rich Low_complexity Low_complexity 3 142 0 23 0 0 0 chr3 63411193 63411216 -154625942 + AT_rich Low_complexity Low_complexity 1 23 0 1264 88 0 6 chr3 63411400 63411570 -154625588 + AluY SINE Alu 134 302 -9 954 127 55 50 chr3 63411573 63411754 -154625404 - LTR29 LTR ERV1 -64 558 377 343 123 0 18 chr3 63414947 63415004 -154622154 - MER58A DNA MER1_type 0 224 169 450 213 78 14 chr3 63415016 63415157 -154622001 + MER53 DNA DNA 1 150 -39 354 209 118 9 chr3 63415283 63415393 -154621765 - L1M4 LINE L1 -1370 4776 4655 1816 192 0 33 chr3 63415402 63415762 -154621396 - L1PA5 LINE L1 0 6154 5807 260 272 0 66 chr3 63415764 63415900 -154621258 + T-rich Low_complexity Low_complexity 4 130 0 845 133 23 58 chr3 63416291 63416464 -154620694 - FRAM SINE Alu 0 176 10 3672 50 0 0 chr3 63417370 63417813 -154619345 + L1PA3 LINE L1 5387 5829 -326 348 151 209 0 chr3 63518970 63519056 -154518102 + U6 snRNA snRNA 1 104 -3 197 180 20 0 chr3 63519319 63519369 -154517789 + (TA)n Simple_repeat Simple_repeat 2 52 0 2022 136 0 7 chr3 63520079 63520380 -154516778 - AluSx SINE Alu -13 299 1 824 164 105 0 chr3 63520483 63520654 -154516504 - MER5A DNA MER1_type 0 189 1 396 195 31 78 chr3 63520676 63520804 -154516354 - MIR SINE MIR -66 142 21 189 0 0 0 chr3 63522053 63522074 -154515084 + (T)n Simple_repeat Simple_repeat 1 21 0 2115 121 0 0 chr3 63522731 63523013 -154514145 + AluSx SINE Alu 1 282 -30 300 53 0 0 chr3 63523013 63523051 -154514107 + (TAAG)n Simple_repeat Simple_repeat 2 39 0 416 296 131 29 chr3 63523389 63523810 -154513348 - LTR33 LTR ERVL -33 488 5 239 240 0 0 chr3 63524267 63524317 -154512841 - MLT1K LTR MaLR -8 580 531 2782 215 104 26 chr3 63524319 63524402 -154512756 + L1MC4 LINE L1 7023 7098 -944 2056 106 34 3 chr3 63524402 63524694 -154512464 + AluSq SINE Alu 1 301 -12 2782 215 104 26 chr3 63524694 63525353 -154511805 + L1MC4 LINE L1 7098 7823 -219 1973 164 0 0 chr3 63526879 63527189 -154509969 - AluSx SINE Alu -2 310 1 6182 213 76 16 chr3 63528289 63529696 -154507462 + L1M2a LINE L1 1 1492 -5676 43677 32 22 3 chr3 63529706 63535739 -154501419 - L1HS LINE L1 0 6155 4 11286 209 29 31 chr3 63535739 63538494 -154498664 + L1M2a LINE L1 1483 4243 -2924 1595 182 25 3 chr3 63538494 63538772 -154498386 + AluJb SINE Alu 1 287 -25 438 20 0 0 chr3 63538772 63538823 -154498335 + (CA)n Simple_repeat Simple_repeat 2 52 0 11286 209 29 31 chr3 63538830 63540490 -154496668 + L1M2a LINE L1 4243 5586 -1581 389 81 16 0 chr3 63540490 63540552 -154496606 + (CTATA)n Simple_repeat Simple_repeat 1 63 0 11286 209 29 31 chr3 63540552 63540795 -154496363 + L1M2a LINE L1 5586 5828 -1339 23 0 0 0 chr3 63541393 63541416 -154495742 + AT_rich Low_complexity Low_complexity 1 23 0 257 376 20 10 chr3 63541567 63541668 -154495490 - L2 LINE L2 -23 3249 3148 2245 105 23 0 chr3 63542177 63542481 -154494677 - AluSx SINE Alu -1 311 1 293 345 71 20 chr3 63543345 63543507 -154493651 + MIR SINE MIR 16 184 -58 1942 121 21 7 chr3 63544076 63544365 -154492793 - L1MA1 LINE L1 0 6302 6010 255 240 13 40 chr3 63544555 63544630 -154492528 + MIR SINE MIR 22 94 -168 245 202 173 58 chr3 63545239 63545343 -154491815 - L3 LINE CR1 -314 1263 1148 246 301 35 52 chr3 63546236 63546409 -154490749 - L2 LINE L2 -148 3165 2996 * 939 297 165 11 chr3 63546407 63547020 -154490138 - L2 LINE L2 -471 2843 2137 274 342 149 0 chr3 63548307 63548421 -154488737 + L2 LINE L2 3140 3270 -2 4733 162 55 19 chr3 63548565 63549424 -154487734 + L1MC2 LINE L1 5444 6333 -11 296 254 14 0 chr3 63549634 63549705 -154487453 + MIR SINE MIR 82 153 -109 362 237 70 77 chr3 63550807 63550963 -154486195 - MER103 DNA DNA -1 165 11 837 182 188 21 chr3 63551234 63551426 -154485732 + MER58A DNA MER1_type 1 224 0 182 200 141 82 chr3 63552880 63552965 -154484193 + MIR SINE MIR 85 174 -88 1315 251 16 9 chr3 63553273 63553588 -154483570 - MLT1E3 LTR MaLR -21 603 287 531 210 14 35 chr3 63553635 63553778 -154483380 - MLT1E3 LTR MaLR -514 140 1 223 348 56 0 chr3 63553779 63553868 -154483290 - MIR SINE MIR -115 147 54 307 286 76 0 chr3 63553981 63554100 -154483058 + MER5C DNA MER1_type 1 128 -196 2189 102 3 3 chr3 63554102 63554385 -154482773 + AluSc SINE Alu 1 283 -26 204 294 0 0 chr3 63556647 63556698 -154480460 + CT-rich Low_complexity Low_complexity 2 52 0 2105 114 7 0 chr3 63556769 63557074 -154480084 + AluSx SINE Alu 1 307 0 326 309 68 59 chr3 63557139 63557479 -154479679 - L2 LINE L2 0 3272 2930 781 142 25 0 chr3 63559394 63559514 -154477644 + FLAM_C SINE Alu 19 141 -2 249 227 0 25 chr3 63559627 63559746 -154477412 + GA-rich Low_complexity Low_complexity 1 116 0 2447 90 0 0 chr3 63559879 63560190 -154476968 - AluY SINE Alu 0 311 1 207 0 0 0 chr3 63560405 63560428 -154476730 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1770 161 0 0 chr3 63561230 63561509 -154475649 + AluJb SINE Alu 24 302 -10 2271 81 0 3 chr3 63561539 63561854 -154475304 - AluSx SINE Alu 0 314 1 2222 75 58 0 chr3 63563612 63563904 -154473254 - AluY SINE Alu -2 309 1 420 275 88 38 chr3 63564539 63564699 -154472459 - L2 LINE L2 -214 3058 2891 2159 138 27 15 chr3 63565870 63566203 -154470955 + MER1B DNA MER1_type 1 337 0 341 293 86 43 chr3 63566635 63566775 -154470383 + MIR SINE MIR 21 166 -96 338 254 36 85 chr3 63567801 63567966 -154469192 - MIR SINE MIR -1 261 105 520 260 98 77 chr3 63568421 63568914 -154468244 + L2 LINE L2 2497 3064 -249 393 315 63 112 chr3 63568992 63569449 -154467709 - L2 LINE L2 -10 3262 2828 1074 248 75 16 chr3 63572254 63572572 -154464586 - MER46C DNA MER2_type 0 338 2 586 328 10 14 chr3 63572978 63573271 -154463887 + Tigger1 DNA MER2_type 2125 2416 -2 641 244 42 33 chr3 63573502 63573715 -154463443 - L1ME2 LINE L1 -136 6028 5814 488 236 18 36 chr3 63573703 63573868 -154463290 - L1M4c LINE L1 -3104 3853 3692 * 1486 260 113 42 chr3 63573862 63574920 -154462238 - L1M4c LINE L1 -3593 3364 2382 369 58 0 0 chr3 63574920 63574972 -154462186 + (TA)n Simple_repeat Simple_repeat 2 53 0 1486 260 113 42 chr3 63574972 63575519 -154461639 - L1M4c LINE L1 -4575 2382 1343 557 298 62 18 chr3 63577136 63577361 -154459797 - MIR SINE MIR 0 262 28 201 323 108 8 chr3 63577654 63577784 -154459374 + L2 LINE L2 2667 2809 -505 249 268 0 0 chr3 63577897 63577953 -154459205 + L2 LINE L2 3167 3222 -91 206 161 0 0 chr3 63578915 63578946 -154458212 + MIR SINE MIR 73 103 -105 228 35 0 0 chr3 63579300 63579329 -154457829 + (TG)n Simple_repeat Simple_repeat 1 29 0 1659 180 0 4 chr3 63579348 63579615 -154457543 - AluJb SINE Alu -46 266 1 184 338 27 14 chr3 63580149 63580223 -154456935 + MIR SINE MIR 32 106 -156 250 269 208 15 chr3 63580423 63580553 -154456605 + L2 LINE L2 3116 3270 -2 2341 102 0 0 chr3 63581298 63581593 -154455565 - AluSx SINE Alu -17 295 1 243 0 0 0 chr3 63581602 63581629 -154455529 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2043 106 0 7 chr3 63581631 63581906 -154455252 - AluSc SINE Alu -31 278 6 433 292 7 21 chr3 63582182 63582326 -154454832 - MIR SINE MIR -73 189 48 414 259 132 44 chr3 63584014 63584186 -154452972 + L1MC4a LINE L1 5283 5438 -726 219 69 0 0 chr3 63584186 63584215 -154452943 + (ATG)n Simple_repeat Simple_repeat 2 30 0 414 259 132 44 chr3 63584215 63584646 -154452512 + L1MC4a LINE L1 5438 5681 -483 213 286 14 0 chr3 63584954 63585024 -154452134 + L2 LINE L2 3175 3245 -27 385 276 10 0 chr3 63585318 63585416 -154451742 + MER45 DNA AcHobo 4 102 -76 941 157 41 23 chr3 63585416 63585588 -154451570 - AluJ SINE Alu -9 303 129 281 122 0 0 chr3 63585638 63585679 -154451479 - AluJ SINE Alu -180 122 82 * 491 139 14 0 chr3 63585677 63585749 -154451409 + MER45 DNA AcHobo 1509 1581 0 2107 102 3 7 chr3 63586575 63586883 -154450275 + AluSq SINE Alu 1 307 0 225 270 40 33 chr3 63586883 63586994 -154450164 + MIR SINE MIR 36 149 -59 206 233 17 0 chr3 63588565 63588625 -154448533 + CT-rich Low_complexity Low_complexity 4 64 0 396 103 0 0 chr3 63589158 63589216 -154447942 - MER53 DNA DNA -130 59 2 195 235 10 128 chr3 63589345 63589447 -154447711 - MIR SINE MIR -152 110 21 211 140 0 53 chr3 63590946 63591003 -154446155 + (TTTC)n Simple_repeat Simple_repeat 3 56 0 2694 120 9 63 chr3 63592409 63592649 -154444509 - Tigger2a DNA MER2_type -2274 434 229 2072 118 34 0 chr3 63592649 63592945 -154444213 + AluSg SINE Alu 1 306 -4 2694 120 9 63 chr3 63592945 63593163 -154443995 - Tigger2a DNA MER2_type -2479 229 1 1893 134 27 3 chr3 63593207 63593499 -154443659 - AluSx SINE Alu -13 299 1 24 0 0 0 chr3 63593849 63593873 -154443285 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr3 63594564 63594600 -154442558 + AT_rich Low_complexity Low_complexity 1 36 0 273 333 39 39 chr3 63594807 63594963 -154442195 + L2 LINE L2 3158 3313 0 930 319 52 11 chr3 63595117 63595499 -154441659 + L1MDa LINE L1 16 413 -6127 378 331 61 53 chr3 63595526 63595787 -154441371 + L1MDa LINE L1 409 993 -5547 3638 159 8 5 chr3 63596085 63596671 -154440487 - LTR69 LTR ERVL 0 588 1 2203 196 81 71 chr3 63596795 63597754 -154439404 + L1MDa LINE L1 644 1586 -4954 * 6054 53 1 1 chr3 63597752 63598492 -154438666 + L1PA8 LINE L1 5374 6113 -59 574 200 58 32 chr3 63598504 63598659 -154438499 + L1MDa LINE L1 2199 2357 -4183 264 30 0 0 chr3 63600901 63600934 -154436224 + (TG)n Simple_repeat Simple_repeat 1 33 0 7920 38 2 9 chr3 63602081 63603270 -154433888 - L1PA4 LINE L1 -2 6153 4968 232 150 25 0 chr3 63603327 63603367 -154433791 - L2 LINE L2 -8 3264 3224 786 158 0 31 chr3 63603574 63603701 -154433457 - FLAM_A SINE Alu -10 123 1 667 296 49 57 chr3 63603814 63604202 -154432956 + MLT1J LTR MaLR 109 493 -18 213 259 176 38 chr3 63604572 63604703 -154432455 + MIR SINE MIR 107 255 -7 362 248 41 16 chr3 63605947 63606068 -154431090 + LTR67 LTR ERVL 434 557 0 274 258 155 93 chr3 63606767 63606961 -154430197 - Charlie8 DNA MER1_type -2184 233 28 414 0 0 0 chr3 63607149 63607195 -154429963 + (CA)n Simple_repeat Simple_repeat 2 47 0 195 240 107 67 chr3 63607494 63607569 -154429589 + L2 LINE L2 3201 3278 -35 502 264 154 34 chr3 63609568 63609860 -154427298 - MLT1K LTR MaLR -27 561 235 21 0 0 0 chr3 63611057 63611078 -154426080 + AT_rich Low_complexity Low_complexity 1 21 0 2552 108 78 10 chr3 63611106 63611506 -154425652 + MSTA LTR MaLR 1 427 -1 488 222 0 20 chr3 63611741 63611840 -154425318 - MLT1C LTR MaLR 0 467 371 381 183 14 0 chr3 63611838 63611909 -154425249 - MLT1B LTR MaLR -318 72 1 * 540 162 63 9 chr3 63611913 63612024 -154425134 - MLT1C-int LTR MaLR -4 1367 1251 1913 124 45 33 chr3 63612024 63612390 -154424768 + MSTB1 LTR MaLR 1 396 0 1961 213 39 14 chr3 63612406 63612819 -154424339 - MLT1C-int LTR MaLR -98 1273 851 1376 96 0 35 chr3 63612835 63613032 -154424126 - AluSc SINE Alu -2 307 118 2350 210 44 63 chr3 63613032 63613687 -154423471 - MLT1C-int LTR MaLR -562 809 225 2519 140 20 0 chr3 63613687 63614044 -154423114 - THE1B LTR MaLR 0 364 1 2350 210 44 63 chr3 63614044 63614265 -154422893 - MLT1C-int LTR MaLR -1146 225 1 1838 183 33 82 chr3 63614265 63614577 -154422581 - MLT1C LTR MaLR 0 467 186 1528 221 0 16 chr3 63614577 63614894 -154422264 - AluJo SINE Alu 0 312 1 1838 183 33 82 chr3 63614894 63615072 -154422086 - MLT1C LTR MaLR -281 186 1 830 311 133 26 chr3 63615111 63615609 -154421549 - MLT1K LTR MaLR -17 571 21 180 257 100 29 chr3 63615623 63615693 -154421465 + MIR3 SINE MIR 127 201 -7 884 221 18 31 chr3 63615808 63616034 -154421124 - L1ME1 LINE L1 -5 6161 5939 6263 142 33 8 chr3 63616054 63617448 -154419710 - L1MA5 LINE L1 -2 6298 4873 3930 191 11 24 chr3 63617567 63618834 -154418324 - L1 LINE L1 -3436 3352 2105 26452 36 2 1 chr3 63618843 63624994 -154412164 - L1PA3 LINE L1 0 6155 6 1650 164 36 67 chr3 63624977 63625397 -154411761 - L1 LINE L1 -4651 2138 1732 * 1390 89 51 0 chr3 63625423 63625637 -154411521 + Tigger7 DNA MER2_type 2263 2487 0 482 59 132 0 chr3 63625737 63625805 -154411353 - MADE1 DNA Mariner -2 78 2 1126 215 197 44 chr3 63625809 63626328 -154410830 - MLT1E2 LTR MaLR 0 626 1 317 203 1 112 chr3 63627507 63627636 -154409522 + MIR SINE MIR 37 151 -62 2650 153 22 2 chr3 63627637 63628089 -154409069 + L1MA6 LINE L1 5830 6290 -10 18514 132 20 95 chr3 63628213 63631977 -154405181 + L1PA7 LINE L1 12 3492 -2654 14174 91 0 15 chr3 63632079 63634790 -154402368 + L1PA7 LINE L1 3448 6146 -8 255 319 11 0 chr3 63634869 63634963 -154402195 + GA-rich Low_complexity Low_complexity 3 97 0 5542 131 35 77 chr3 63635914 63636047 -154401111 - L1MA9 LINE L1 -1 6311 6174 414 0 0 0 chr3 63636047 63636093 -154401065 + (TG)n Simple_repeat Simple_repeat 1 46 0 5542 131 35 77 chr3 63636093 63637098 -154400060 - L1MA9 LINE L1 -138 6174 5221 310 289 21 49 chr3 63637478 63637620 -154399538 - MIR SINE MIR -92 170 33 231 352 50 33 chr3 63637666 63637967 -154399191 + L2 LINE L2 2344 2649 -665 751 263 123 19 chr3 63638192 63638500 -154398658 - MER113 DNA MER1_type? -122 399 60 517 151 47 0 chr3 63638521 63638607 -154398551 + Tigger7 DNA MER2_type 32 121 -584 2341 87 0 0 chr3 63638607 63638895 -154398263 + AluY SINE Alu 1 288 -23 483 147 0 0 chr3 63638895 63638997 -154398161 + (TA)n Simple_repeat Simple_repeat 1 102 0 898 186 142 0 chr3 63638997 63639180 -154397978 + Tigger7 DNA MER2_type 114 322 -411 405 120 26 51 chr3 63639174 63639291 -154397867 + Tigger7 DNA MER2_type 2297 2410 -77 * 411 164 15 0 chr3 63639291 63639358 -154397800 + THE1C LTR MaLR 1 68 -307 773 136 0 0 chr3 63639489 63639599 -154397559 + FLAM_C SINE Alu 32 141 -2 310 241 46 37 chr3 63640189 63640297 -154396861 - MIR3 SINE MIR -7 201 93 807 256 126 23 chr3 63642018 63642366 -154394792 - MLT1J2 LTR MaLR 0 450 67 218 32 32 0 chr3 63642448 63642479 -154394679 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 251 326 6 24 chr3 63643383 63643512 -154393646 + MIR SINE MIR 52 176 -32 2204 111 0 10 chr3 63644243 63644541 -154392617 - AluSg SINE Alu -15 295 1 247 224 0 82 chr3 63645061 63645159 -154391999 - MER3 DNA MER1_type -118 91 2 466 286 281 12 chr3 63645193 63645534 -154391624 - L2 LINE L2 -253 3060 2624 464 337 54 57 chr3 63645890 63646546 -154390612 - L2 LINE L2 -3 3269 2618 227 283 62 26 chr3 63646718 63646831 -154390327 - MIR SINE MIR -27 235 119 207 318 34 11 chr3 63647106 63647194 -154389964 + L3 LINE CR1 240 329 -1248 211 125 0 0 chr3 63648203 63648235 -154388923 - MIR SINE MIR -117 145 114 325 161 0 0 chr3 63648276 63648332 -154388826 + MLT2B3 LTR ERVL 497 552 -2 464 239 9 9 chr3 63648656 63648769 -154388389 - MER5B DNA MER1_type -3 175 63 1232 173 22 31 chr3 63648841 63649066 -154388092 + MER58A DNA MER1_type 1 223 -1 264 284 64 0 chr3 63649135 63649244 -154387914 - MER117 DNA MER1_type -77 120 5 304 136 0 123 chr3 63649930 63650011 -154387147 - MER103 DNA DNA -79 87 17 377 160 33 113 chr3 63650185 63650288 -154386870 + Charlie7 DNA MER1_type 2467 2556 -56 2210 121 3 0 chr3 63650288 63650593 -154386565 - AluSx SINE Alu -6 306 1 377 160 33 113 chr3 63650593 63650639 -154386519 + Charlie7 DNA MER1_type 2556 2604 -8 791 215 107 29 chr3 63650954 63651159 -154385999 + MER58A DNA MER1_type 4 224 0 2110 116 42 55 chr3 63651879 63652259 -154384899 - THE1C LTR MaLR 0 375 1 6997 241 54 36 chr3 63652562 63652683 -154384475 - L1ME2 LINE L1 0 6164 6047 2068 138 0 3 chr3 63652683 63652974 -154384184 + AluSx SINE Alu 1 290 -22 6997 241 54 36 chr3 63652974 63656344 -154380814 - L1ME2 LINE L1 -117 6047 2616 970 259 60 0 chr3 63656344 63656560 -154380598 + MER68 LTR ERV1 240 468 -94 3383 238 36 36 chr3 63656565 63657729 -154379429 - L1MCa LINE L1 -2936 3490 2327 499 93 35 0 chr3 63657729 63657815 -154379343 + CT-rich Low_complexity Low_complexity 3 91 0 3337 210 134 25 chr3 63657815 63658061 -154379097 - L1MCa LINE L1 -4177 2430 2212 1170 199 40 123 chr3 63658061 63658459 -154378699 - MLT1A1 LTR MaLR 0 365 1 3337 210 134 25 chr3 63658459 63658633 -154378525 - L1MCa LINE L1 -4395 2212 2058 1873 154 0 42 chr3 63658633 63658945 -154378213 - AluJb SINE Alu -13 299 1 3337 210 134 25 chr3 63658945 63659683 -154377475 - L1MCa LINE L1 -4549 2058 1040 2812 175 47 44 chr3 63660305 63660940 -154376218 - L1MB8 LINE L1 0 6178 5542 367 227 11 0 chr3 63661047 63661135 -154376023 - L1MB8 LINE L1 0 6178 6090 4752 180 335 22 chr3 63661487 63663168 -154373990 - L1MB8 LINE L1 -1246 4900 2693 335 268 112 78 chr3 63663894 63664073 -154373085 + MIR3 SINE MIR 16 200 -8 * 374 326 53 30 chr3 63664069 63664201 -154372957 - L2 LINE L2 -4 3268 3134 700 182 178 19 chr3 63664463 63664677 -154372481 + LTR54B LTR ERV1 56 303 -195 1752 145 27 0 chr3 63664832 63665094 -154372064 - AluSx SINE Alu -43 269 1 240 288 18 68 chr3 63665680 63665843 -154371315 - MLT1K LTR MaLR -33 555 401 579 280 202 0 chr3 63665982 63666225 -154370933 + L2 LINE L2 2983 3274 -39 723 146 0 133 chr3 63666233 63666391 -154370767 + MER2 DNA MER2_type 1 137 -208 1982 113 10 30 chr3 63666391 63666693 -154370465 - AluSx SINE Alu -16 296 1 854 175 105 0 chr3 63666796 63666967 -154370191 - MER5A DNA MER1_type 0 189 1 391 217 18 55 chr3 63666989 63667115 -154370043 - MIR SINE MIR -66 142 21 1218 251 39 47 chr3 63717296 63717811 -154319347 + MER74A LTR ERVL 47 557 -1 228 274 67 52 chr3 63717848 63717983 -154319175 + MIR SINE MIR 71 207 -55 218 313 47 0 chr3 63718832 63718896 -154318262 + L2 LINE L2 3199 3265 -7 322 296 11 0 chr3 63719242 63719330 -154317828 + L2 LINE L2 2701 2789 -525 264 313 137 52 chr3 63719431 63719664 -154317494 + L2 LINE L2 3049 3301 -12 1938 129 3 0 chr3 63720357 63720667 -154316491 - AluSx SINE Alu 0 311 1 1360 188 4 4 chr3 63720718 63720968 -154316190 - AluJb SINE Alu -16 296 47 1486 199 7 7 chr3 63720996 63721293 -154315865 + AluJo SINE Alu 2 298 -14 332 249 196 40 chr3 63721435 63721608 -154315550 - L2 LINE L2 -1 3312 3113 378 236 0 0 chr3 63722575 63722647 -154314511 + MLT1J LTR MaLR 239 310 -201 441 282 0 24 chr3 63722719 63722843 -154314315 - MIR SINE MIR -31 231 111 2335 100 0 10 chr3 63722922 63723231 -154313927 + AluSx SINE Alu 1 306 -6 431 299 146 0 chr3 63723236 63723400 -154313758 + MIR SINE MIR 63 250 -12 2433 63 0 3 chr3 63724360 63724659 -154312499 - AluY SINE Alu -13 298 1 1708 209 79 38 chr3 63725654 63726099 -154311059 + MLT1C LTR MaLR 3 465 -2 426 109 0 0 chr3 63726302 63726366 -154310792 + Alu SINE Alu 245 308 -4 564 310 141 62 chr3 63726391 63726936 -154310222 - L2 LINE L2 -737 2577 1990 182 281 181 25 chr3 63727481 63727641 -154309517 + L2 LINE L2 2555 2739 -575 400 281 117 101 chr3 63727646 63728023 -154309135 + L2 LINE L2 2922 3304 -9 231 149 0 64 chr3 63728023 63728070 -154309088 + (GAAA)n Simple_repeat Simple_repeat 3 46 0 721 176 11 22 chr3 63728072 63728344 -154308814 + GA-rich Low_complexity Low_complexity 1 269 0 536 333 40 20 chr3 63728344 63728545 -154308613 + MIR SINE MIR 28 232 -30 2352 105 0 0 chr3 63729446 63729750 -154307408 - AluY SINE Alu -7 304 1 655 116 0 0 chr3 63730248 63730334 -154306824 + AluS SINE Alu 2 87 -225 580 275 85 44 chr3 63730863 63731482 -154305676 + L1MEd LINE L1 694 1397 -4862 7297 71 0 0 chr3 63731551 63732872 -154304286 - L1PA7 LINE L1 -3 6151 4830 324 324 56 0 chr3 63734066 63734174 -154302984 + L2 LINE L2 3155 3268 -4 182 315 134 8 chr3 63734156 63734283 -154302875 - MIR3 SINE MIR -31 177 35 * 2300 75 0 78 chr3 63735224 63735555 -154301603 - AluSg1 SINE Alu -4 305 1 1811 123 0 86 chr3 63735763 63736087 -154301071 - AluSx SINE Alu -16 296 1 218 215 28 37 chr3 63736287 63736394 -154300764 + G-rich Low_complexity Low_complexity 6 111 0 32 43 0 0 chr3 63736471 63736517 -154300641 + GC_rich Low_complexity Low_complexity 1 46 0 954 281 46 36 chr3 63737312 63738145 -154299013 - L1MC/D LINE L1 -864 5282 4735 2303 151 26 48 chr3 63738614 63739031 -154298127 - MLT2D LTR ERVL -2 412 5 315 265 121 0 chr3 63739296 63739379 -154297779 - MER5A DNA MER1_type -88 101 9 235 81 0 54 chr3 63739740 63739777 -154297381 + MIR SINE MIR 63 97 -165 2418 97 0 0 chr3 63740150 63740461 -154296697 - AluY SINE Alu 0 311 1 303 347 33 0 chr3 63740686 63740807 -154296351 + MIR SINE MIR 40 164 -98 322 309 111 0 chr3 63741345 63741471 -154295687 - MIR SINE MIR 0 262 123 195 338 81 0 chr3 63743812 63743886 -154293272 - L2 LINE L2 -24 3248 3169 318 278 35 81 chr3 63744021 63744219 -154292939 - L2 LINE L2 -245 3027 2839 2138 126 0 3 chr3 63744384 63744677 -154292481 + AluSx SINE Alu 1 292 -20 226 309 131 0 chr3 63745081 63745165 -154291993 - L2 LINE L2 -31 3282 3188 968 181 128 13 chr3 63745478 63745730 -154291428 + MSTA LTR MaLR 32 316 -116 288 337 21 21 chr3 63746596 63746765 -154290393 + CT-rich Low_complexity Low_complexity 6 286 0 1482 191 27 30 chr3 63747803 63748101 -154289057 - AluJo SINE Alu -5 297 1 2314 105 0 3 chr3 63749399 63749703 -154287455 + AluSg SINE Alu 1 303 -7 2222 131 113 35 chr3 63749743 63750140 -154287018 + MSTA LTR MaLR 1 428 0 465 232 350 0 chr3 63752467 63752661 -154284497 + MLT1E1 LTR MaLR 1 262 -392 26046 49 4 1 chr3 63752831 63756067 -154281091 - L1PA15-16 LINE L1 -750 6099 2852 2273 98 6 55 chr3 63756448 63756809 -154280349 + AluSx SINE Alu 1 345 0 386 143 0 16 chr3 63757778 63757841 -154279317 - MER116 DNA Mariner -7 73 12 1864 161 0 13 chr3 63759644 63759948 -154277210 - AluJo SINE Alu -8 304 5 314 246 55 36 chr3 63759957 63760067 -154277091 + MER5A DNA MER1_type 56 167 -22 935 164 5 119 chr3 63760563 63760660 -154276498 - MER45A DNA AcHobo -1403 178 114 2483 82 0 9 chr3 63760660 63760975 -154276183 + AluSx SINE Alu 1 312 0 935 164 5 119 chr3 63760975 63761078 -154276080 - MER45A DNA AcHobo -1467 114 1 386 53 18 0 chr3 63762277 63762334 -154274824 + (CA)n Simple_repeat Simple_repeat 1 58 0 1294 210 0 0 chr3 63763247 63763466 -154273692 + MER58A DNA MER1_type 1 219 -5 22 35 0 0 chr3 63763651 63763680 -154273478 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 63763913 63763935 -154273223 + AT_rich Low_complexity Low_complexity 1 22 0 222 192 0 0 chr3 63764090 63764142 -154273016 + CT-rich Low_complexity Low_complexity 5 56 0 194 318 200 0 chr3 63765721 63765831 -154271327 + L3b LINE CR1 1271 1402 -181 180 0 0 0 chr3 63765945 63765965 -154271193 + (A)n Simple_repeat Simple_repeat 1 20 0 9055 212 58 55 chr3 63766718 63766786 -154270372 - L1MD1 LINE L1 0 6636 6570 811 154 0 0 chr3 63766786 63766903 -154270255 + FLAM_C SINE Alu 1 117 -16 239 0 32 0 chr3 63766907 63766938 -154270220 + (TAA)n Simple_repeat Simple_repeat 2 33 0 9055 212 58 55 chr3 63766938 63769946 -154267212 - L1MD1 LINE L1 -68 6568 3572 2216 108 3 16 chr3 63769946 63770262 -154266896 - AluSx SINE Alu 0 312 1 9055 212 58 55 chr3 63770262 63771250 -154265908 - L1MD1 LINE L1 -3064 3572 2589 2323 95 3 7 chr3 63771250 63771554 -154265604 - AluSc SINE Alu -6 303 1 9055 212 58 55 chr3 63771554 63771679 -154265479 - L1MD1 LINE L1 -4047 2589 2466 2731 106 17 3 chr3 63771679 63772038 -154265120 + THE1B LTR MaLR 1 364 0 9055 212 58 55 chr3 63772038 63773464 -154263694 - L1MD1 LINE L1 -4170 2466 954 567 243 141 73 chr3 63773524 63773784 -154263374 - L1MD1 LINE L1 -6144 396 102 1453 102 37 81 chr3 63773784 63774030 -154263128 + MER46A DNA MER2_type 1 235 -1 567 243 141 73 chr3 63774030 63774139 -154263019 - L1MD1 LINE L1 -6438 102 2 227 182 73 18 chr3 63774768 63774823 -154262335 - MER4D LTR ERV1 -509 394 337 230 206 103 29 chr3 63775179 63775247 -154261911 - L2 LINE L2 -43 3229 3157 400 231 56 27 chr3 63777358 63777486 -154259672 - MIR SINE MIR -53 155 34 413 289 94 82 chr3 63777968 63778286 -154258872 + MLT1L LTR MaLR 104 524 -86 332 285 0 0 chr3 63778482 63778573 -154258585 + MIR SINE MIR 30 120 -88 348 248 114 22 chr3 63779674 63779835 -154257323 + MIR SINE MIR 16 200 -62 1811 161 3 22 chr3 63780468 63780784 -154256374 - AluJo SINE Alu -2 310 1 218 302 31 10 chr3 63785076 63785172 -154251986 + MIR SINE MIR 165 262 0 * 478 200 43 9 chr3 63785167 63785282 -154251876 - L2 LINE L2 -2 3311 3193 346 291 101 22 chr3 63785616 63785795 -154251363 - MIR SINE MIR -62 200 8 351 0 0 0 chr3 63785877 63785916 -154251242 + (CA)n Simple_repeat Simple_repeat 1 39 0 2693 124 17 67 chr3 63786051 63786682 -154250476 + MER4E LTR ERV1 1 766 0 255 310 21 41 chr3 63786721 63786866 -154250292 + MIR SINE MIR 42 183 -79 225 250 0 19 chr3 63786996 63787048 -154250110 + (CAT)n Simple_repeat Simple_repeat 3 53 0 22 56 0 0 chr3 63788897 63788933 -154248225 + AT_rich Low_complexity Low_complexity 1 36 0 1997 133 14 0 chr3 63789533 63789819 -154247339 + AluSg SINE Alu 1 290 -20 409 248 107 0 chr3 63791351 63791472 -154245686 - L2 LINE L2 0 3313 3180 841 202 25 25 chr3 63791652 63791850 -154245308 - MER3 DNA MER1_type -1 208 11 421 335 105 26 chr3 63792231 63792583 -154244575 + MLT1K LTR MaLR 209 588 0 291 307 59 0 chr3 63792586 63792687 -154244471 + L2 LINE L2 3145 3251 -21 2631 111 3 19 chr3 63795470 63795840 -154241318 + THE1B LTR MaLR 1 364 0 2188 121 0 10 chr3 63796208 63796514 -154240644 - AluSg SINE Alu -7 303 1 1940 131 57 0 chr3 63796517 63796829 -154240329 - AluSq SINE Alu 0 330 3 297 0 0 0 chr3 63796981 63797014 -154240144 + (TG)n Simple_repeat Simple_repeat 1 33 0 1765 159 17 17 chr3 63797192 63797493 -154239665 + AluSx SINE Alu 1 301 -11 1622 144 13 69 chr3 63797600 63797906 -154239252 - AluSx SINE Alu -11 301 13 340 284 39 10 chr3 63798098 63798200 -154238958 + MIR3 SINE MIR 67 171 -37 2211 109 30 0 chr3 63798612 63798915 -154238243 + AluSx SINE Alu 1 312 0 286 200 13 40 chr3 63799027 63799102 -154238056 - MIR SINE MIR -87 175 103 300 292 125 75 chr3 63800072 63800487 -154236671 - L2 LINE L2 -1 3271 2836 274 304 5 72 chr3 63801184 63801378 -154235780 + L2 LINE L2 1713 1893 -1421 1646 147 13 42 chr3 63801390 63801696 -154235462 - AluSx SINE Alu -1 311 15 26 0 0 0 chr3 63801696 63801722 -154235436 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr3 63801791 63801815 -154235343 + AT_rich Low_complexity Low_complexity 1 24 0 224 264 0 0 chr3 63801869 63801922 -154235236 + L2 LINE L2 2715 2767 -547 337 236 162 54 chr3 63802077 63802318 -154234840 + L1M4 LINE L1 3651 3917 -2229 868 202 121 0 chr3 63803040 63803238 -154233920 + MER58A DNA MER1_type 3 224 0 267 213 50 31 chr3 63803269 63803429 -154233729 + MER5C DNA MER1_type 62 314 -10 1404 168 39 90 chr3 63804347 63804721 -154232437 + MLT1E LTR MaLR 294 593 0 880 201 65 5 chr3 63804820 63805019 -154232139 - MIR SINE MIR -1 261 51 2618 163 39 72 chr3 63806016 63806453 -154230705 - MER74A LTR ERVL 0 558 143 1799 106 61 65 chr3 63806453 63806746 -154230412 - AluSx SINE Alu -10 302 11 2618 163 39 72 chr3 63806746 63806880 -154230278 - MER74A LTR ERVL -415 143 6 1044 175 73 18 chr3 63808090 63808363 -154228795 - L1ME3 LINE L1 -329 5833 5524 197 367 101 13 chr3 63808424 63808582 -154228576 + MIR3 SINE MIR 1 172 -36 1509 158 91 10 chr3 63808966 63809264 -154227894 - MLT1H1 LTR MaLR -48 507 186 225 0 0 0 chr3 63810239 63810264 -154226894 + (TC)n Simple_repeat Simple_repeat 2 26 0 326 68 80 0 chr3 63810264 63810352 -154226806 + (TA)n Simple_repeat Simple_repeat 1 95 0 37 23 0 0 chr3 63810449 63810493 -154226665 + AT_rich Low_complexity Low_complexity 1 44 0 615 117 0 32 chr3 63810530 63810624 -154226534 + AluJ/FLAM SINE Alu 1 91 -221 361 269 10 10 chr3 63812472 63812576 -154224582 + MER5A DNA MER1_type 6 109 -80 269 224 115 109 chr3 63814955 63815147 -154222011 - L1ME LINE L1 -318 5803 5611 381 252 46 30 chr3 63815193 63815324 -154221834 - L2 LINE L2 -3 3269 3137 852 298 28 54 chr3 63815399 63815862 -154221296 + L2 LINE L2 2291 2741 -573 1806 192 103 23 chr3 63815885 63816313 -154220845 - MLT1C LTR MaLR -5 462 1 238 248 47 98 chr3 63816476 63816710 -154220448 + L2 LINE L2 3011 3232 -81 21 0 0 0 chr3 63817145 63817166 -154219992 + AT_rich Low_complexity Low_complexity 1 21 0 614 319 61 0 chr3 63817325 63817620 -154219538 - L2 LINE L2 -615 2699 2387 825 114 0 16 chr3 63818316 63818439 -154218719 - AluSg/x SINE Alu -6 304 184 1984 212 165 45 chr3 63818516 63819345 -154217813 + L1MD1 LINE L1 5432 6320 -24 287 303 183 17 chr3 63819395 63819570 -154217588 - MIR SINE MIR -45 217 14 1561 230 45 16 chr3 63820014 63820393 -154216765 + MLT1B LTR MaLR 1 390 0 406 235 17 34 chr3 63820634 63820753 -154216405 + MER103 DNA DNA 2 118 -48 2026 174 86 19 chr3 63820854 63821284 -154215874 - MLT1C LTR MaLR -8 459 1 2245 114 3 19 chr3 63821613 63821929 -154215229 - AluSq SINE Alu -2 311 1 257 283 117 17 chr3 63825002 63825122 -154212036 + L2 LINE L2 3141 3272 0 567 225 17 52 chr3 63825672 63825845 -154211313 + L1MC5 LINE L1 6739 6905 -1056 1447 258 65 22 chr3 63826004 63826297 -154210861 + L1MC5 LINE L1 6998 7277 -684 209 83 28 0 chr3 63826297 63826333 -154210825 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1447 258 65 22 chr3 63826333 63826590 -154210568 + L1MC5 LINE L1 7277 7572 -389 339 158 0 0 chr3 63826627 63826684 -154210474 + L1MC5 LINE L1 7727 7783 -178 1880 224 36 75 chr3 63826689 63826744 -154210414 - MLT1F LTR MaLR 0 542 486 1777 154 3 102 chr3 63826744 63827115 -154210043 + MER1B DNA MER1_type 1 334 -3 1880 224 36 75 chr3 63827115 63827621 -154209537 - MLT1F LTR MaLR -56 486 3 433 260 87 40 chr3 63827727 63827877 -154209281 + MIR SINE MIR 32 188 -74 359 304 29 14 chr3 63828396 63828534 -154208624 + MLT1K LTR MaLR 125 264 -324 280 163 51 82 chr3 63828570 63828668 -154208490 + MER53 DNA DNA 3 97 -92 * 289 154 218 39 chr3 63828630 63828708 -154208450 - MER53 DNA DNA -96 93 2 297 359 0 0 chr3 63829062 63829165 -154207993 - MIR SINE MIR 0 262 160 263 303 40 0 chr3 63829231 63829330 -154207828 + L1ME LINE L1 5669 5771 -350 297 75 0 0 chr3 63829346 63829386 -154207772 + (TA)n Simple_repeat Simple_repeat 2 41 0 360 0 0 0 chr3 63829387 63829427 -154207731 + (CA)n Simple_repeat Simple_repeat 1 40 0 1139 229 84 4 chr3 63831418 63831667 -154205491 - MER45B DNA AcHobo -771 269 1 353 250 81 16 chr3 63831814 63831938 -154205220 + MIR SINE MIR 103 234 -28 483 333 40 20 chr3 63833439 63833640 -154203518 - MIR SINE MIR -30 232 28 2921 13 0 0 chr3 63833643 63834096 -154203062 - AluYb8 SINE Alu 0 453 1 274 232 0 30 chr3 63834136 63834235 -154202923 + CT-rich Low_complexity Low_complexity 4 99 0 231 149 0 64 chr3 63834237 63834284 -154202874 + (TTTC)n Simple_repeat Simple_repeat 3 46 0 312 284 117 101 chr3 63834284 63834661 -154202497 - L2 LINE L2 -9 3304 2922 473 312 139 61 chr3 63835371 63835916 -154201242 + L2 LINE L2 1990 2577 -737 2407 98 0 9 chr3 63835944 63836279 -154200879 - AluSx SINE Alu 0 332 1 393 273 0 25 chr3 63836358 63836479 -154200679 + MIR SINE MIR 111 228 -34 372 236 0 0 chr3 63836554 63836626 -154200532 - MLT1J LTR MaLR -201 310 239 335 345 21 31 chr3 63837264 63837455 -154199703 + MIR SINE MIR 71 259 -3 2091 136 0 13 chr3 63838339 63838647 -154198511 - AluJb SINE Alu -8 304 1 397 339 0 0 chr3 63838649 63838770 -154198388 - MER117 DNA MER1_type -73 124 4 378 201 145 25 chr3 63840163 63840322 -154196836 + MIR SINE MIR 78 255 -7 780 161 6 78 chr3 63840773 63840953 -154196205 - MER20 DNA MER1_type 0 219 53 1902 122 52 0 chr3 63842666 63842953 -154194205 - AluSx SINE Alu -10 302 1 206 89 22 44 chr3 63843687 63843732 -154193426 + MIR SINE MIR 84 127 -135 187 175 50 0 chr3 63843800 63843840 -154193318 + L2 LINE L2 3255 3296 -17 2235 105 0 0 chr3 63844041 63844326 -154192832 + AluSc SINE Alu 1 285 -24 737 121 8 0 chr3 63846110 63846234 -154190924 + (TTTC)n Simple_repeat Simple_repeat 2 126 0 291 120 0 53 chr3 63847219 63847294 -154189864 + (TTCC)n Simple_repeat Simple_repeat 1 71 0 2245 105 0 0 chr3 63847303 63847589 -154189569 - AluSq SINE Alu -27 286 1 22 70 0 0 chr3 63847790 63847833 -154189325 + AT_rich Low_complexity Low_complexity 1 43 0 309 300 91 51 chr3 63847971 63848324 -154188834 + L1ME4a LINE L1 5704 6070 -51 6074 74 0 1 chr3 63851487 63852286 -154184872 - L1P LINE L1 -3938 2208 1411 22 79 0 0 chr3 63852470 63852508 -154184650 + GC_rich Low_complexity Low_complexity 1 38 0 1800 155 7 3 chr3 63853696 63853980 -154183178 - AluSx SINE Alu -23 289 5 262 331 24 30 chr3 63856156 63856322 -154180836 - L2 LINE L2 -17 3296 3132 361 255 47 42 chr3 63856710 63856902 -154180256 - MER4D LTR ERV1 -47 856 664 876 163 174 11 chr3 63857530 63857720 -154179438 + MER58A DNA MER1_type 4 224 0 270 303 55 0 chr3 63857729 63857838 -154179320 - MIR3 SINE MIR -79 129 15 989 321 97 33 chr3 63857876 63858912 -154178246 - L2 LINE L2 0 3313 2212 300 343 7 7 chr3 63859279 63859416 -154177742 + MIR3 SINE MIR 61 197 -11 519 275 107 34 chr3 63859721 63860052 -154177106 - MLT1J2 LTR MaLR -65 381 17 510 324 5 34 chr3 63860135 63860342 -154176816 - MIR SINE MIR -14 248 48 1182 221 87 16 chr3 63861813 63862125 -154175033 + MLT1C LTR MaLR 132 465 -2 2436 97 0 0 chr3 63863126 63863437 -154173721 + AluY SINE Alu 1 311 0 221 81 0 54 chr3 63863810 63863847 -154173311 - MIR SINE MIR -165 97 63 285 265 121 0 chr3 63864208 63864291 -154172867 + MER5A DNA MER1_type 9 101 -88 2086 149 31 50 chr3 63864556 63864972 -154172186 + MLT2D LTR ERVL 5 412 -2 1761 160 14 0 chr3 63865524 63865806 -154171352 - AluSg SINE Alu -24 286 1 341 300 91 51 chr3 63867266 63867619 -154169539 - L1ME4a LINE L1 -51 6070 5704 22 70 0 0 chr3 63867757 63867800 -154169358 + AT_rich Low_complexity Low_complexity 1 43 0 2245 105 0 0 chr3 63868001 63868287 -154168871 + AluSq SINE Alu 1 286 -27 1081 48 0 14 chr3 63868292 63868437 -154168721 + (GAAA)n Simple_repeat Simple_repeat 2 144 0 228 207 135 27 chr3 63870126 63870237 -154166921 - L1MB8 LINE L1 0 6178 6056 1211 172 19 0 chr3 63870638 63870847 -154166311 + MER20 DNA MER1_type 1 213 -6 240 125 194 42 chr3 63870945 63871017 -154166141 - L2 LINE L2 0 3313 3231 541 301 25 6 chr3 63871845 63872008 -154165150 + MLT1I LTR MaLR 13 178 -231 1259 150 0 0 chr3 63872014 63872207 -154164951 + MER2 DNA MER2_type 1 193 -152 183 42 0 0 chr3 63872208 63872232 -154164926 + (TTATA)n Simple_repeat Simple_repeat 2 25 0 2325 102 0 0 chr3 63872235 63872528 -154164630 - AluSx SINE Alu -19 293 1 375 192 82 0 chr3 63872569 63872642 -154164516 + MER2 DNA MER2_type 267 345 0 313 338 81 0 chr3 63872642 63872788 -154164370 + MLT1I LTR MaLR 183 340 -69 1597 181 143 37 chr3 63872800 63873226 -154163932 - L1MD2 LINE L1 -13 6346 5862 305 96 41 137 chr3 63873203 63873254 -154163904 - L1MB4 LINE L1 0 6180 6137 * 2072 124 7 3 chr3 63873254 63873545 -154163613 - AluSq SINE Alu -21 292 1 305 96 41 137 chr3 63873545 63873566 -154163592 - L1MB4 LINE L1 -43 6137 6116 361 301 60 27 chr3 63873646 63873829 -154163329 + MER5A DNA MER1_type 1 189 0 490 208 0 0 chr3 63875369 63875470 -154161688 - MER103 DNA DNA -47 119 19 216 0 0 0 chr3 63875643 63875667 -154161491 + (TA)n Simple_repeat Simple_repeat 1 24 0 268 229 29 0 chr3 63876198 63876268 -154160890 - L1MC5 LINE L1 -57 7904 7833 2073 278 87 46 chr3 63876315 63876699 -154160459 - L1MC4a LINE L1 -915 6893 6526 1419 232 27 22 chr3 63876699 63877069 -154160089 - MLT1A2 LTR MaLR 0 374 3 2073 278 87 46 chr3 63877069 63877296 -154159862 - L1MC4a LINE L1 -1282 6526 6310 992 189 0 0 chr3 63877296 63877455 -154159703 + FRAM SINE Alu 1 159 -7 2073 278 87 46 chr3 63877455 63878306 -154158852 - L1MC4a LINE L1 -1498 6310 5370 2353 239 52 20 chr3 63878351 63879345 -154157813 - L1MC4a LINE L1 -2920 3226 2201 5817 237 63 51 chr3 63879432 63881811 -154155347 - L1ME1 LINE L1 -58 6108 3673 2255 105 0 3 chr3 63881811 63882106 -154155052 - AluSq SINE Alu -19 294 1 5817 237 63 51 chr3 63882106 63882841 -154154317 - L1ME1 LINE L1 -2493 3673 2948 40373 36 23 2 chr3 63882861 63888880 -154148278 - L1PA2 LINE L1 -4 6151 1 1301 266 78 16 chr3 63888884 63889564 -154147594 - L1M4 LINE L1 -2290 3856 3135 1916 214 132 32 chr3 63889594 63889906 -154147252 + MLT1E2 LTR MaLR 1 280 -346 1869 170 3 13 chr3 63889906 63890212 -154146946 + AluJo SINE Alu 1 303 -9 1916 214 132 32 chr3 63890212 63890461 -154146697 + MLT1E2 LTR MaLR 280 618 -8 299 269 100 70 chr3 63891488 63891881 -154145277 - L1MC4 LINE L1 -17 8025 7645 306 0 0 0 chr3 63891881 63891915 -154145243 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2152 102 0 24 chr3 63891918 63892211 -154144947 - AluSx SINE Alu -24 288 3 299 269 100 70 chr3 63892211 63892277 -154144881 - L1MC4 LINE L1 -398 7644 7581 2023 119 5 92 chr3 63892277 63892646 -154144512 - MER1B DNA MER1_type 0 337 1 299 269 100 70 chr3 63892646 63892773 -154144385 - L1MC4 LINE L1 -461 7581 7316 189 74 0 0 chr3 63893001 63893028 -154144130 + (TTTTTA)n Simple_repeat Simple_repeat 4 30 0 225 0 0 0 chr3 63893814 63893839 -154143319 + (T)n Simple_repeat Simple_repeat 1 25 0 278 247 161 11 chr3 63895204 63895297 -154141861 - L2 LINE L2 -6 3307 3201 2261 114 0 9 chr3 63895856 63896171 -154140987 - AluSx SINE Alu 0 312 1 415 282 72 39 chr3 63897155 63897339 -154139819 - MER5B DNA MER1_type -2 176 4 1269 110 57 114 chr3 63898425 63898616 -154138542 - L1PA16 LINE L1 -8 6158 5989 2260 136 0 0 chr3 63898616 63898924 -154138234 - AluSc SINE Alu -1 308 1 1269 110 57 114 chr3 63898924 63899031 -154138127 - L1PA16 LINE L1 -177 5989 5877 971 238 17 10 chr3 63899061 63899351 -154137807 + MER33 DNA MER1_type 33 324 0 1713 178 7 0 chr3 63899525 63899806 -154137352 + AluJb SINE Alu 1 283 -29 24 0 0 0 chr3 63900741 63900765 -154136393 + AT_rich Low_complexity Low_complexity 1 24 0 249 93 56 0 chr3 63901035 63901089 -154136069 + (TA)n Simple_repeat Simple_repeat 1 57 0 2147 127 0 3 chr3 63903086 63903386 -154133772 - AluSx SINE Alu -13 299 1 381 349 0 9 chr3 63903408 63903514 -154133644 - MIR SINE MIR -80 182 78 609 268 75 39 chr3 63905128 63905382 -154131776 - MER115 DNA AcHobo 0 693 431 306 298 30 36 chr3 63905446 63905614 -154131544 - MER115 DNA AcHobo -494 199 33 461 350 59 43 chr3 63905621 63905993 -154131165 - L1ME LINE L1 -418 5703 5326 417 290 80 50 chr3 63906717 63906967 -154130191 - MIR SINE MIR -3 259 7 230 329 0 0 chr3 63907319 63907389 -154129769 + Charlie4 DNA MER1_type 1892 1961 0 229 343 0 0 chr3 63907462 63907532 -154129626 - L2 LINE L2 -2 3270 3201 1964 119 41 60 chr3 63907785 63908103 -154129055 - AluSx SINE Alu 0 312 1 286 325 117 25 chr3 63908286 63908406 -154128752 - MIR3 SINE MIR -43 165 35 344 280 61 15 chr3 63908547 63908679 -154128479 + Charlie2 DNA MER1_type 8 145 -2637 481 257 15 0 chr3 63908709 63908845 -154128313 - LTR16C LTR ERVL -13 478 341 832 220 91 32 chr3 63909218 63909607 -154127551 + Charlie2 DNA MER1_type 2230 2729 -133 2290 68 0 0 chr3 63909607 63909885 -154127273 - AluY SINE Alu -12 299 22 832 220 91 32 chr3 63909885 63910008 -154127150 + Charlie2 DNA MER1_type 2729 2843 -19 1958 270 72 78 chr3 63910105 63910536 -154126622 - L1ME3A LINE L1 -6 6424 5992 2065 63 46 50 chr3 63910536 63910839 -154126319 + AluY SINE Alu 1 302 -9 1958 270 72 78 chr3 63910839 63912769 -154124389 - L1ME3A LINE L1 -438 5992 4093 1932 135 32 0 chr3 63912769 63913051 -154124107 - AluSx SINE Alu -21 291 1 1958 270 72 78 chr3 63913051 63913296 -154123862 - L1ME3A LINE L1 -2337 4093 3848 324 267 13 97 chr3 63913298 63913496 -154123662 - L1MDb LINE L1 -5112 1294 1110 468 238 20 0 chr3 63913606 63913707 -154123451 - MLT1H LTR MaLR -398 151 49 184 264 57 0 chr3 63913980 63914033 -154123125 + L2 LINE L2 3241 3296 -17 287 326 208 7 chr3 63914066 63914210 -154122948 - MIR SINE MIR -88 174 2 278 277 60 0 chr3 63914802 63914885 -154122273 + MIR SINE MIR 74 161 -101 887 277 157 43 chr3 63914949 63915419 -154121739 + MLT1K LTR MaLR 11 534 -54 2209 133 0 0 chr3 63915542 63915842 -154121316 + AluSx SINE Alu 1 300 -12 658 258 137 33 chr3 63916953 63917442 -154119716 + L1ME4a LINE L1 5577 6116 -5 553 275 27 19 chr3 63918602 63918811 -154118347 + MIR3 SINE MIR 5 212 -50 434 291 108 13 chr3 63919909 63920067 -154117091 - MIR SINE MIR -70 192 20 956 229 120 0 chr3 63920104 63920396 -154116762 + L1MC4 LINE L1 7575 7901 -141 2187 102 48 0 chr3 63920612 63920907 -154116251 + AluSc SINE Alu 1 309 0 299 281 65 36 chr3 63921938 63922077 -154115081 - MIR3 SINE MIR -49 159 17 529 247 29 24 chr3 63922103 63922273 -154114885 - MLT1K LTR MaLR -2 586 416 1561 184 85 3 chr3 63922567 63922898 -154114260 - MLT1A1 LTR MaLR 0 365 8 276 303 21 41 chr3 63922903 63923048 -154114110 - MLT1K LTR MaLR -440 148 7 295 330 11 0 chr3 63923094 63923185 -154113973 + L2 LINE L2 3164 3255 -17 509 284 100 29 chr3 63923189 63923570 -154113588 - L1ME4a LINE L1 -39 6082 5675 14451 25 3 0 chr3 63924149 63926575 -154110583 - L1PA4 LINE L1 -2 6153 3724 395 234 124 87 chr3 63928497 63928584 -154108574 - L2 LINE L2 -218 3054 2972 1612 132 0 0 chr3 63928584 63928811 -154108347 + AluSc SINE Alu 1 227 -82 395 234 124 87 chr3 63928811 63929021 -154108137 - L2 LINE L2 -300 2972 2749 192 125 0 0 chr3 63929546 63929578 -154107580 + (GA)n Simple_repeat Simple_repeat 1 32 0 204 355 0 27 chr3 63930383 63930493 -154106665 + MIR SINE MIR 16 122 -140 25 65 0 0 chr3 63930813 63930859 -154106299 + AT_rich Low_complexity Low_complexity 1 46 0 544 271 120 0 chr3 63930859 63931051 -154106107 - MIR SINE MIR 0 262 48 4327 161 27 26 chr3 63931550 63932402 -154104756 + L1MB7 LINE L1 5188 6042 -142 598 86 11 32 chr3 63932402 63932489 -154104669 + L1MB8 LINE L1 6087 6177 -1 2319 109 0 0 chr3 63932564 63932866 -154104292 + AluSx SINE Alu 1 302 -10 2123 133 7 7 chr3 63933738 63934046 -154103112 - AluSx SINE Alu -2 310 3 477 340 25 20 chr3 63934186 63934383 -154102775 - MIR SINE MIR -15 247 50 2048 156 0 0 chr3 63935094 63935389 -154101769 + AluJb SINE Alu 1 295 -17 395 303 140 11 chr3 63935582 63935760 -154101398 + MIR SINE MIR 50 250 -12 209 316 53 0 chr3 63935810 63935886 -154101272 - MIR SINE MIR -95 167 88 534 268 134 48 chr3 63935940 63935987 -154101171 - L2 LINE L2 -43 3270 3228 222 37 0 0 chr3 63935987 63936014 -154101144 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 534 268 134 48 chr3 63936014 63936431 -154100727 - L2 LINE L2 -85 3228 2751 251 184 40 64 chr3 63936459 63936584 -154100574 - L1MC5 LINE L1 -37 7924 7803 1970 301 93 36 chr3 63936704 63938210 -154098948 - L2 LINE L2 -655 2659 1068 385 296 101 30 chr3 63938960 63939129 -154098029 + MIR SINE MIR 79 259 -3 202 208 0 38 chr3 63939146 63939199 -154097959 + (TTA)n Simple_repeat Simple_repeat 1 51 0 1296 215 40 54 chr3 63939382 63939754 -154097404 + MLT1A2 LTR MaLR 4 370 -4 196 314 74 86 chr3 63940285 63940460 -154096698 + MIR SINE MIR 36 208 -54 2289 110 10 0 chr3 63940942 63941250 -154095908 + AluSq SINE Alu 1 311 -2 438 184 0 0 chr3 63941274 63941350 -154095808 + L1PB4 LINE L1 6077 6152 -4 419 311 26 0 chr3 63941829 63941980 -154095178 - MIR SINE MIR -56 206 52 25 0 0 0 chr3 63942284 63942309 -154094849 + AT_rich Low_complexity Low_complexity 1 25 0 1328 175 44 9 chr3 63943296 63943524 -154093634 - MER46A DNA MER2_type 0 236 1 313 285 49 24 chr3 63943642 63943765 -154093393 + MIR SINE MIR 13 138 -124 944 221 120 67 chr3 63944685 63945001 -154092157 + MER58B DNA MER1_type 9 341 0 296 302 62 10 chr3 63945472 63945568 -154091590 - L2 LINE L2 -1 3312 3212 1041 155 78 19 chr3 63945916 63946122 -154091036 - MER20 DNA MER1_type -1 218 1 683 305 9 5 chr3 63947476 63947689 -154089469 + MIR SINE MIR 15 228 -34 555 298 135 13 chr3 63947754 63948176 -154088982 - L2 LINE L2 -33 3280 2792 371 235 221 27 chr3 63948184 63948266 -154088892 - MER5B DNA MER1_type 0 178 113 2368 85 0 0 chr3 63948266 63948561 -154088597 - AluSx SINE Alu -17 295 1 371 235 221 27 chr3 63948561 63948627 -154088531 - MER5B DNA MER1_type -65 113 1 379 281 139 67 chr3 63948683 63949085 -154088073 - L2 LINE L2 -596 2718 2288 22 35 0 0 chr3 63949381 63949410 -154087748 + AT_rich Low_complexity Low_complexity 1 29 0 207 317 37 12 chr3 63954568 63954650 -154082508 + L2 LINE L2 1466 1549 -1765 723 243 25 67 chr3 63954710 63954994 -154082164 + L2 LINE L2 1636 1907 -1407 315 305 33 46 chr3 63955020 63955171 -154081987 + L2 LINE L2 3122 3270 -2 545 289 80 30 chr3 63955562 63955998 -154081160 + L1MC4a LINE L1 4231 4688 -1458 478 319 98 42 chr3 63956066 63956581 -154080577 + L1MC4a LINE L1 5340 5774 -347 186 43 0 0 chr3 63957172 63957195 -154079963 + (GGGAA)n Simple_repeat Simple_repeat 4 26 0 296 62 0 21 chr3 63957466 63957514 -154079644 + (TATG)n Simple_repeat Simple_repeat 2 48 0 217 232 105 42 chr3 63957645 63957740 -154079418 - MIR SINE MIR -61 201 101 274 256 219 29 chr3 63957740 63957877 -154079281 - MIR SINE MIR -77 185 23 273 269 50 43 chr3 63959245 63959386 -154077772 + L1 LINE L1 3682 3823 -2323 345 169 22 11 chr3 63959439 63959528 -154077630 + CT-rich Low_complexity Low_complexity 1 90 0 882 173 7 0 chr3 63959538 63959688 -154077470 - FRAM SINE Alu -21 155 5 301 341 31 0 chr3 63960120 63960249 -154076909 + L1 LINE L1 4026 4158 -1988 1787 249 72 31 chr3 63960491 63961350 -154075808 + MER45C DNA AcHobo 1 953 0 303 245 36 161 chr3 63961674 63961866 -154075292 + MER5B DNA MER1_type 4 171 -7 478 219 178 14 chr3 63961883 63962029 -154075129 - MER5A DNA MER1_type -2 187 18 1808 138 27 7 chr3 63962799 63963096 -154074062 + AluJo SINE Alu 1 303 -9 331 315 112 30 chr3 63963277 63963474 -154073684 + MLT1K LTR MaLR 33 245 -343 295 214 0 0 chr3 63963668 63963724 -154073434 + MLT1K LTR MaLR 517 572 -16 460 260 147 0 chr3 63964575 63964725 -154072433 - MIR SINE MIR 0 262 91 225 196 0 0 chr3 63964823 63964874 -154072284 + (CACCAT)n Simple_repeat Simple_repeat 5 55 0 188 250 131 24 chr3 63964876 63964960 -154072198 - MIR SINE MIR -8 254 162 4095 185 107 5 chr3 63965067 63965817 -154071341 + LTR1B LTR ERV1 1 826 0 381 241 231 0 chr3 63966321 63966429 -154070729 - MIR SINE MIR -113 149 17 24 53 0 0 chr3 63966570 63966608 -154070550 + AT_rich Low_complexity Low_complexity 1 38 0 344 214 0 0 chr3 63967816 63967905 -154069253 - L1MA7 LINE L1 0 6291 6203 1179 84 17 2 chr3 63967920 63968219 -154068939 - THE1B LTR MaLR 0 364 1 5235 161 14 16 chr3 63968221 63969350 -154067808 - L1MA7 LINE L1 -106 6185 5054 3673 203 29 1 chr3 63969346 63970108 -154067050 + L1 LINE L1 4325 5107 -1039 * 664 265 23 103 chr3 63970302 63971012 -154066146 + L1ME1 LINE L1 658 1259 -4956 817 236 85 7 chr3 63971030 63971323 -154065835 + L1ME1 LINE L1 1957 2272 -4124 1114 263 82 35 chr3 63971325 63971865 -154065293 + L1ME1 LINE L1 4113 4677 -1538 970 215 34 65 chr3 63971872 63972237 -154064921 + L1ME1 LINE L1 5883 6231 0 * 1850 246 31 84 chr3 63972234 63973077 -154064081 + L1ME1 LINE L1 2217 3014 -3201 28363 34 14 1 chr3 63973083 63979108 -154058050 + L1PA2 LINE L1 2 6151 -4 5915 235 63 51 chr3 63979128 63979863 -154057295 + L1ME1 LINE L1 3017 3742 -2493 2255 105 0 3 chr3 63979863 63980158 -154057000 + AluSq SINE Alu 1 294 -19 5915 235 63 51 chr3 63980158 63982538 -154054620 + L1ME1 LINE L1 3742 6177 -58 2338 240 52 20 chr3 63982625 63983619 -154053539 + L1MC4a LINE L1 2201 3226 -2920 2115 279 87 45 chr3 63983664 63984515 -154052643 + L1MC4a LINE L1 5370 6184 -1624 992 189 0 0 chr3 63984515 63984674 -154052484 - FRAM SINE Alu -7 159 1 2115 279 87 45 chr3 63984674 63984901 -154052257 + L1MC4a LINE L1 6184 6400 -1408 1434 240 22 19 chr3 63984901 63985272 -154051886 + MLT1A2 LTR MaLR 3 374 0 2115 279 87 45 chr3 63985272 63985682 -154051476 + L1MC4a LINE L1 6400 6922 -886 268 229 29 0 chr3 63985703 63985773 -154051385 + L1MC5 LINE L1 7833 7904 -57 396 0 0 0 chr3 63986304 63986348 -154050810 + (TA)n Simple_repeat Simple_repeat 1 44 0 473 218 0 0 chr3 63986521 63986622 -154050536 + MER103 DNA DNA 19 119 -47 397 294 60 33 chr3 63988162 63988346 -154048812 - MER5A DNA MER1_type 0 189 1 2457 91 0 0 chr3 63988447 63988755 -154048403 + AluSg SINE Alu 1 308 -2 1840 123 0 0 chr3 63988805 63989048 -154048110 - AluSx SINE Alu -69 243 1 386 310 164 30 chr3 63990300 63990568 -154046590 + L1ME4a LINE L1 5622 5925 -196 256 221 0 29 chr3 63990587 63990655 -154046503 + L1ME4a LINE L1 5972 6037 -84 548 314 56 24 chr3 63990843 63991180 -154045978 + L1ME3A LINE L1 5328 5675 -2133 354 112 93 0 chr3 63991285 63991587 -154045571 + (TA)n Simple_repeat Simple_repeat 1 330 0 210 143 0 0 chr3 63991605 63991640 -154045518 + (TA)n Simple_repeat Simple_repeat 1 35 0 234 303 67 34 chr3 63992315 63992404 -154044754 - L2 LINE L2 -10 3262 3171 558 287 61 35 chr3 63992434 63992664 -154044494 - MIR SINE MIR -16 246 11 242 332 28 9 chr3 63992980 63993101 -154044057 + MIR SINE MIR 27 141 -67 441 327 62 22 chr3 63995779 63996005 -154041153 - MIR SINE MIR -12 250 16 216 158 0 0 chr3 63998196 63998234 -154038924 + (CGTG)n Simple_repeat Simple_repeat 4 41 0 209 294 11 54 chr3 63998337 63998429 -154038729 + L2 LINE L2 2710 2797 -517 493 315 159 30 chr3 63998470 63998873 -154038285 + L2 LINE L2 2809 3263 -9 742 238 8 50 chr3 63999015 63999255 -154037903 + L1ME3A LINE L1 5936 6165 -5 2318 100 3 10 chr3 63999553 63999862 -154037296 - AluSx SINE Alu -5 307 1 1853 218 3 0 chr3 64000477 64000840 -154036318 - MLT1A1 LTR MaLR 0 365 2 385 345 35 40 chr3 64000865 64001091 -154036067 - MIR SINE MIR -14 248 24 261 340 49 36 chr3 64001340 64001705 -154035453 + L1MEd LINE L1 435 804 -5315 341 264 25 8 chr3 64001799 64001920 -154035238 + L1MEd LINE L1 942 1064 -5055 819 135 0 0 chr3 64002559 64002692 -154034466 + (GGAA)n Simple_repeat Simple_repeat 4 136 0 416 307 17 27 chr3 64002803 64003099 -154034059 + L1MEd LINE L1 2183 2475 -3654 321 322 0 0 chr3 64003481 64003571 -154033587 + L1MC4 LINE L1 6614 6703 -1339 * 345 300 0 0 chr3 64003517 64003607 -154033551 - L1MC4 LINE L1 -1339 6703 6614 460 339 80 59 chr3 64003823 64004334 -154032824 + L1MEd LINE L1 3235 3756 -2373 2224 105 3 3 chr3 64004349 64004644 -154032514 - AluSx SINE Alu -17 295 1 209 123 57 38 chr3 64004715 64004821 -154032337 + (TA)n Simple_repeat Simple_repeat 2 109 0 209 125 97 28 chr3 64004843 64004915 -154032243 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 24 77 0 0 chr3 64005006 64005058 -154032100 + AT_rich Low_complexity Low_complexity 1 52 0 673 109 8 17 chr3 64005220 64005339 -154031819 + L1MB4 LINE L1 6063 6180 0 344 301 149 27 chr3 64005352 64006022 -154031136 + L1MEd LINE L1 4015 4766 -1363 294 29 0 0 chr3 64006097 64006132 -154031026 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 888 125 0 0 chr3 64006145 64006265 -154030893 + FLAM_A SINE Alu 16 135 -7 274 186 0 0 chr3 64006427 64006486 -154030672 + L1M LINE L1 5348 5406 -761 563 258 32 0 chr3 64007601 64007756 -154029402 + MIR SINE MIR 92 251 -11 207 286 22 22 chr3 64007758 64007849 -154029309 + (TAA)n Simple_repeat Simple_repeat 2 92 0 332 222 262 16 chr3 64007850 64007976 -154029182 + MIR SINE MIR 1 157 -105 262 224 45 0 chr3 64008542 64008609 -154028549 + MIR SINE MIR 152 221 -41 510 262 218 0 chr3 64008715 64008921 -154028237 + MIR SINE MIR 12 262 0 566 264 82 69 chr3 64009270 64009720 -154027438 - MER113 DNA MER1_type? -49 472 17 578 301 35 62 chr3 64009727 64009986 -154027172 - MIR SINE MIR -1 261 10 2092 106 3 11 chr3 64010454 64010764 -154026394 - AluSx SINE Alu 0 308 1 450 350 59 0 chr3 64010980 64011200 -154025958 - MIR SINE MIR -7 255 23 1038 181 52 9 chr3 64012411 64012621 -154024537 - MER20 DNA MER1_type 0 219 1 337 332 78 24 chr3 64012926 64013131 -154024027 - MIR SINE MIR -19 243 28 336 288 79 36 chr3 64013581 64013859 -154023299 - L1ME4a LINE L1 -213 5908 5619 243 320 86 81 chr3 64014225 64014447 -154022711 - L2 LINE L2 -4 3268 3046 1569 125 19 4 chr3 64014809 64015065 -154022093 - L1PA15 LINE L1 -3 6162 5903 312 252 100 96 chr3 64015066 64015296 -154021862 - MIR SINE MIR -8 254 24 333 0 0 0 chr3 64016286 64016323 -154020835 + (TG)n Simple_repeat Simple_repeat 2 38 0 207 0 0 0 chr3 64018492 64018515 -154018643 + (CAA)n Simple_repeat Simple_repeat 2 24 0 257 0 0 29 chr3 64019898 64019932 -154017226 + (TTTAA)n Simple_repeat Simple_repeat 3 35 0 2225 96 0 0 chr3 64019932 64020218 -154016940 - AluSx SINE Alu -26 286 1 3069 152 72 18 chr3 64021209 64021820 -154015338 + LTR48B LTR ERV1 1 644 0 296 288 54 36 chr3 64022125 64022236 -154014922 + L2 LINE L2 3160 3272 0 2241 116 3 7 chr3 64023032 64023333 -154013825 - AluSg SINE Alu -10 300 1 663 277 104 9 chr3 64023567 64023787 -154013371 + MIR SINE MIR 2 242 -20 422 261 29 45 chr3 64024122 64024314 -154012844 - MIR SINE MIR -62 146 1 1127 136 0 11 chr3 64024625 64024809 -154012349 - L1PA8 LINE L1 0 6172 5991 187 240 93 67 chr3 64025523 64025598 -154011560 - MIR SINE MIR -9 253 177 2408 67 0 0 chr3 64026164 64026496 -154010662 + AluY SINE Alu 1 332 0 2022 127 10 23 chr3 64026776 64027084 -154010074 + AluSx SINE Alu 1 304 -8 277 245 29 59 chr3 64027134 64027236 -154009922 - MIR SINE MIR -66 142 44 555 147 87 136 chr3 64027406 64027461 -154009697 - MER5B DNA MER1_type 0 178 122 1589 165 12 73 chr3 64027461 64027789 -154009369 - AluJo SINE Alu -4 308 1 555 147 87 136 chr3 64027789 64027917 -154009241 - MER5B DNA MER1_type -56 122 4 3532 45 0 0 chr3 64028026 64028448 -154008710 - L1PA7 LINE L1 -2 6152 5731 448 244 130 108 chr3 64029402 64029902 -154007256 + MLT1J LTR MaLR 1 511 0 2367 115 0 0 chr3 64029935 64030248 -154006910 + AluSq SINE Alu 1 313 0 592 311 29 21 chr3 64030350 64030588 -154006570 + MIR SINE MIR 11 250 -12 395 19 19 0 chr3 64031271 64031323 -154005835 + (CA)n Simple_repeat Simple_repeat 1 53 0 2015 127 106 48 chr3 64032031 64032410 -154004748 + MSTA LTR MaLR 1 401 -27 310 98 0 0 chr3 64032436 64032477 -154004681 + MSTA LTR MaLR 388 428 0 388 289 20 26 chr3 64032995 64033147 -154004011 + MER5B DNA MER1_type 8 158 -20 235 287 142 9 chr3 64033356 64033515 -154003643 - MIR SINE MIR -50 212 30 2357 97 3 0 chr3 64033686 64033984 -154003174 + AluSx SINE Alu 1 299 -13 472 136 0 0 chr3 64033993 64034059 -154003099 + MER45 DNA AcHobo 1515 1580 -1 2179 142 0 0 chr3 64034650 64034960 -154002198 - AluSx SINE Alu -2 310 1 555 300 74 13 chr3 64035476 64035706 -154001452 - MIR SINE MIR -17 245 2 195 42 0 0 chr3 64038458 64038482 -153998676 + (TGGG)n Simple_repeat Simple_repeat 2 25 0 236 315 62 27 chr3 64039582 64039728 -153997430 - MIR3 SINE MIR -17 191 41 749 194 105 31 chr3 64041836 64042027 -153995131 - MER3 DNA MER1_type 0 209 5 3619 124 20 13 chr3 64042123 64042673 -153994485 + MER41A LTR ERV1 1 554 0 13101 112 40 29 chr3 64042673 64046919 -153990239 + MER41A-int LTR ERV1 1 5944 -2 4182 96 4 0 chr3 64046919 64047471 -153989687 + MER41A LTR ERV1 1 554 0 21 0 0 0 chr3 64048169 64048190 -153988968 + AT_rich Low_complexity Low_complexity 1 21 0 1448 17 0 17 chr3 64048707 64048880 -153988278 - L1PA3 LINE L1 0 6155 5986 316 53 0 0 chr3 64048880 64048918 -153988240 + L1PA3 LINE L1 5961 5998 -157 333 0 0 0 chr3 64049111 64049148 -153988010 + (TG)n Simple_repeat Simple_repeat 2 38 0 2284 119 0 6 chr3 64049657 64049968 -153987190 - AluSx SINE Alu -3 309 1 465 304 50 17 chr3 64050767 64050948 -153986210 + MIR SINE MIR 56 242 -20 429 326 121 15 chr3 64051991 64052331 -153984827 + L2 LINE L2 2897 3272 0 781 275 40 0 chr3 64053206 64053453 -153983705 - MIR SINE MIR -4 258 2 252 211 0 0 chr3 64053605 64053676 -153983482 + (CCAA)n Simple_repeat Simple_repeat 2 72 0 341 198 10 0 chr3 64054571 64054667 -153982491 + G-rich Low_complexity Low_complexity 4 100 0 934 130 0 33 chr3 64054677 64054861 -153982297 + (GGGGA)n Simple_repeat Simple_repeat 3 180 0 278 262 0 16 chr3 64054865 64055048 -153982110 + G-rich Low_complexity Low_complexity 1 180 0 197 183 46 39 chr3 64055018 64055171 -153981987 + (CGGGA)n Simple_repeat Simple_repeat 4 157 0 * 233 224 20 0 chr3 64055186 64055235 -153981923 + GA-rich Low_complexity Low_complexity 5 54 0 315 323 19 26 chr3 64055287 64055442 -153981716 + MIR SINE MIR 53 206 -56 2171 101 10 3 chr3 64056045 64056342 -153980816 + AluSx SINE Alu 1 299 -13 294 176 23 92 chr3 64058045 64058176 -153978982 + MER113 DNA MER1_type? 5 126 -395 1957 141 0 0 chr3 64058766 64059056 -153978102 - AluSx SINE Alu 0 302 13 234 237 85 0 chr3 64059063 64059122 -153978036 - MER5B DNA MER1_type -108 70 7 812 208 71 0 chr3 64060394 64060562 -153976596 + MER58A DNA MER1_type 45 224 0 205 277 15 15 chr3 64060570 64060635 -153976523 - L2 LINE L2 -563 2751 2687 221 274 0 36 chr3 64061687 64061771 -153975387 + CT-rich Low_complexity Low_complexity 1 81 0 1133 193 0 0 chr3 64062027 64062229 -153974929 - MER3 DNA MER1_type 0 209 8 23 68 0 0 chr3 64062622 64062666 -153974492 + AT_rich Low_complexity Low_complexity 1 44 0 206 139 0 0 chr3 64062961 64062997 -153974161 + MIR SINE MIR 81 116 -92 2603 155 12 12 chr3 64063386 64063806 -153973352 + MSTC LTR MaLR 1 420 -8 2002 146 11 0 chr3 64066494 64066781 -153970377 - AluJb SINE Alu -21 291 2 227 152 0 87 chr3 64066965 64067011 -153970147 + MER110A LTR ERV1 84 125 -343 624 196 78 7 chr3 64067037 64067190 -153969968 + MER110A LTR ERV1 302 465 -3 1017 133 0 0 chr3 64067211 64067354 -153969804 - FRAM SINE Alu -30 146 4 284 212 192 48 chr3 64067405 64067551 -153969607 + L2 LINE L2 3120 3286 -27 1681 171 59 7 chr3 64068156 64068443 -153968715 + AluJo SINE Alu 1 302 -10 1902 171 263 43 chr3 64069962 64070605 -153966553 + LTR48 LTR ERV1 1 784 -3 484 260 39 0 chr3 64072347 64072474 -153964684 + MIR SINE MIR 120 251 -11 1822 150 10 7 chr3 64073459 64073753 -153963405 + AluSg SINE Alu 1 295 -15 196 320 149 21 chr3 64073792 64073986 -153963172 - MIR SINE MIR -15 247 29 244 280 122 37 chr3 64074193 64074300 -153962858 + MER20B DNA MER1_type 260 375 -408 697 261 69 16 chr3 64074395 64074640 -153962518 + MER20B DNA MER1_type 521 778 -5 185 313 62 45 chr3 64076044 64076156 -153961002 - MIR3 SINE MIR -6 202 89 527 303 107 60 chr3 64076205 64076683 -153960475 + MLT1K LTR MaLR 3 521 -67 233 212 47 47 chr3 64076708 64076729 -153960429 + LTR67 LTR ERVL 473 557 0 234 281 16 0 chr3 64076729 64076793 -153960365 + MLT1K LTR MaLR 524 588 0 375 341 8 0 chr3 64077582 64077705 -153959453 + MLT2E LTR ERVL 41 164 -464 237 205 39 51 chr3 64078360 64078438 -153958720 + MIR SINE MIR 50 126 -136 233 182 0 0 chr3 64078467 64078511 -153958647 + L2 LINE L2 3217 3260 -12 21 0 0 0 chr3 64078772 64078793 -153958365 + AT_rich Low_complexity Low_complexity 1 21 0 213 360 50 0 chr3 64079989 64080089 -153957069 - MIR SINE MIR -135 127 23 291 311 123 8 chr3 64080421 64080543 -153956615 + HAL1 LINE L1 509 644 -1863 1496 273 143 34 chr3 64080628 64080762 -153956396 + HAL1 LINE L1 793 911 -1596 252 0 0 0 chr3 64080762 64080790 -153956368 + (CA)n Simple_repeat Simple_repeat 2 29 0 1496 273 143 34 chr3 64080790 64080884 -153956274 + HAL1 LINE L1 911 993 -1514 2355 64 0 3 chr3 64080884 64081208 -153955950 + AluY SINE Alu 1 323 0 1496 273 143 34 chr3 64081208 64082338 -153954820 + HAL1 LINE L1 993 2427 -80 1668 162 10 52 chr3 64082387 64082559 -153954599 - AluJo SINE Alu -16 296 141 2271 109 0 0 chr3 64082559 64082862 -153954296 - AluY SINE Alu -8 303 1 1668 162 10 52 chr3 64082862 64082998 -153954160 - AluJo SINE Alu -171 141 1 269 162 73 44 chr3 64084516 64084584 -153952574 - HERV9 LTR ERV1 -6558 1841 1772 379 307 73 21 chr3 64086211 64086403 -153950755 + MIR SINE MIR 9 210 -52 27 0 0 0 chr3 64086877 64086904 -153950254 + AT_rich Low_complexity Low_complexity 1 27 0 338 365 18 18 chr3 64087751 64087970 -153949188 + L2 LINE L2 2851 3069 -203 895 213 183 0 chr3 64088044 64088246 -153948912 - MER8 DNA MER2_type 0 239 1 488 279 0 16 chr3 64089506 64089628 -153947530 - MIR SINE MIR -126 136 17 1998 109 3 21 chr3 64090570 64090888 -153946270 + AluSx SINE Alu 5 317 0 2104 108 0 39 chr3 64091537 64091843 -153945315 + AluSx SINE Alu 5 298 -14 706 230 55 14 chr3 64091994 64092330 -153944828 + MLT1J2 LTR MaLR 4 428 -22 623 56 0 11 chr3 64092483 64092572 -153944586 + (GGAA)n Simple_repeat Simple_repeat 2 89 0 1923 155 10 3 chr3 64093396 64093705 -153943453 - AluJb SINE Alu -1 311 1 2148 116 7 7 chr3 64094488 64094790 -153942368 - AluSx SINE Alu -10 302 1 265 282 145 0 chr3 64094816 64094947 -153942211 - MIR SINE MIR -34 228 79 290 156 0 91 chr3 64095241 64095318 -153941840 - MIR3 SINE MIR -15 193 124 1022 227 19 5 chr3 64095417 64095633 -153941525 + MER58A DNA MER1_type 4 222 -2 323 343 60 6 chr3 64096335 64096501 -153940657 - MIR SINE MIR -60 202 28 216 0 0 0 chr3 64096910 64096934 -153940224 + (CAAG)n Simple_repeat Simple_repeat 3 26 0 186 143 0 0 chr3 64098447 64098482 -153938676 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 333 242 91 79 chr3 64098769 64099021 -153938137 + L1MD1 LINE L1 5685 5939 -303 432 0 0 0 chr3 64099039 64099087 -153938071 + (TG)n Simple_repeat Simple_repeat 2 49 0 731 235 29 45 chr3 64099146 64099389 -153937769 + MIR SINE MIR 3 241 -21 1088 203 10 0 chr3 64099750 64099957 -153937201 - MER3 DNA MER1_type 0 209 1 296 353 44 5 chr3 64101006 64101210 -153935948 - MIR SINE MIR -43 219 8 240 234 0 62 chr3 64105233 64105297 -153931861 + L2 LINE L2 3167 3226 -87 2077 85 85 0 chr3 64106644 64106925 -153930233 + AluSq SINE Alu 1 305 -8 2255 128 0 0 chr3 64107004 64107349 -153929809 + AluSx SINE Alu 1 345 0 211 360 63 9 chr3 64107367 64107478 -153929680 + L2 LINE L2 3143 3259 -13 315 311 104 12 chr3 64108608 64108772 -153928386 + MIR SINE MIR 74 252 -10 262 288 0 0 chr3 64108778 64108858 -153928300 + (TTA)n Simple_repeat Simple_repeat 1 80 0 2506 73 0 3 chr3 64108883 64109185 -153927973 + AluY SINE Alu 1 301 -10 2310 102 3 0 chr3 64109196 64109500 -153927658 + AluSg SINE Alu 1 305 -5 375 290 145 0 chr3 64109505 64109650 -153927508 + MIR SINE MIR 63 228 -34 2457 63 0 3 chr3 64110629 64110928 -153926230 - AluY SINE Alu -13 298 1 385 186 144 0 chr3 64111929 64112026 -153925132 + MLT1C LTR MaLR 6 116 -351 240 234 0 62 chr3 64116270 64116334 -153920824 + L2 LINE L2 3167 3226 -87 2069 86 86 0 chr3 64117686 64117966 -153919192 + AluSq SINE Alu 1 304 -9 2255 128 0 0 chr3 64118045 64118390 -153918768 + AluSx SINE Alu 1 345 0 211 360 63 9 chr3 64118408 64118519 -153918639 + L2 LINE L2 3143 3259 -13 315 311 104 12 chr3 64119649 64119813 -153917345 + MIR SINE MIR 74 252 -10 262 288 0 0 chr3 64119819 64119899 -153917259 + (TTA)n Simple_repeat Simple_repeat 1 80 0 2506 73 0 3 chr3 64119924 64120226 -153916932 + AluY SINE Alu 1 301 -10 2400 103 0 0 chr3 64120237 64120549 -153916609 + AluSx SINE Alu 1 312 0 183 273 0 91 chr3 64122211 64122288 -153914870 + MIR3 SINE MIR 113 182 -26 22 35 0 0 chr3 64122347 64122376 -153914782 + AT_rich Low_complexity Low_complexity 1 29 0 207 225 0 0 chr3 64123179 64123219 -153913939 + L2 LINE L2 3188 3227 -45 1121 208 121 84 chr3 64124357 64124895 -153912263 - MER34B LTR ERV1 -2 563 6 226 317 134 0 chr3 64125559 64125641 -153911517 + MIR SINE MIR 36 128 -80 182 244 22 0 chr3 64125824 64125869 -153911289 + L2 LINE L2 3263 3308 -5 197 259 0 0 chr3 64125944 64125998 -153911160 - MIR SINE MIR -12 250 197 24 67 0 0 chr3 64126011 64126056 -153911102 + AT_rich Low_complexity Low_complexity 1 45 0 378 239 11 11 chr3 64126078 64126170 -153910988 - MIR SINE MIR -84 178 87 549 292 28 6 chr3 64126991 64127169 -153909989 + MIR SINE MIR 3 184 -78 1741 262 45 39 chr3 64129298 64129870 -153907288 - MLT1K LTR MaLR -6 582 7 1138 247 58 3 chr3 64130612 64130993 -153906165 - L1MEc LINE L1 -2461 3754 3353 1854 285 89 49 chr3 64131058 64132519 -153904639 - L1MEc LINE L1 -4221 2175 656 183 364 50 0 chr3 64133170 64133291 -153903867 + MIR SINE MIR 117 243 -19 2097 121 0 10 chr3 64135161 64135450 -153901708 + AluSg SINE Alu 1 286 -24 287 342 82 19 chr3 64135467 64135904 -153901254 + L2 LINE L2 2727 3201 -112 381 43 0 0 chr3 64135904 64135951 -153901207 + (CA)n Simple_repeat Simple_repeat 2 48 0 287 342 82 19 chr3 64135951 64136008 -153901150 + L2 LINE L2 3201 3253 -60 377 338 25 19 chr3 64136204 64136364 -153900794 - MIR SINE MIR -96 166 6 879 271 96 23 chr3 64136430 64136948 -153900210 + L1ME4a LINE L1 5349 5919 -202 279 54 0 0 chr3 64136948 64136985 -153900173 + (TG)n Simple_repeat Simple_repeat 2 38 0 * 288 77 0 0 chr3 64136984 64137023 -153900135 + (TA)n Simple_repeat Simple_repeat 2 40 0 180 111 0 0 chr3 64140684 64140711 -153896447 + (A)n Simple_repeat Simple_repeat 1 27 0 543 250 61 21 chr3 64141680 64141892 -153895266 + MIR SINE MIR 2 258 -4 228 282 0 0 chr3 64141896 64141967 -153895191 + (CAT)n Simple_repeat Simple_repeat 1 71 0 378 188 281 8 chr3 64142495 64142623 -153894535 - MIR SINE MIR -15 247 85 237 318 28 19 chr3 64143161 64143268 -153893890 + L1ME LINE L1 5712 5819 -302 * 327 254 17 25 chr3 64143266 64143384 -153893774 + L1MC/D LINE L1 5374 5490 -2318 200 178 0 22 chr3 64144356 64144401 -153892757 - L2 LINE L2 -7 3306 3263 657 213 143 5 chr3 64144520 64144736 -153892422 + MIR SINE MIR 17 262 0 384 260 29 124 chr3 64146086 64146328 -153890830 - MIR SINE MIR -37 225 7 378 0 0 0 chr3 64148060 64148102 -153889056 + (TG)n Simple_repeat Simple_repeat 2 43 0 450 0 0 0 chr3 64148191 64148241 -153888917 + (TG)n Simple_repeat Simple_repeat 2 51 0 218 269 128 0 chr3 64149792 64149870 -153887288 - L2 LINE L2 0 3313 3226 317 325 25 19 chr3 64150230 64150390 -153886768 + MIR SINE MIR 76 236 -26 839 288 122 47 chr3 64151247 64151698 -153885460 + MLT1K LTR MaLR 14 498 -90 222 192 0 0 chr3 64153036 64153088 -153884070 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 350 269 112 45 chr3 64153265 64153488 -153883670 + MIR SINE MIR 14 251 -11 1730 147 53 3 chr3 64154731 64155016 -153882142 + AluSg SINE Alu 1 299 -11 21 0 0 0 chr3 64155556 64155577 -153881581 + AT_rich Low_complexity Low_complexity 1 21 0 336 48 0 0 chr3 64156870 64156912 -153880246 + (TG)n Simple_repeat Simple_repeat 2 43 0 633 319 66 42 chr3 64157527 64158291 -153878867 + L2 LINE L2 2498 3271 -1 498 254 14 14 chr3 64158351 64158489 -153878669 - MIR SINE MIR -29 233 96 417 20 0 0 chr3 64159268 64159318 -153877840 + (TG)n Simple_repeat Simple_repeat 1 50 0 942 268 96 18 chr3 64161585 64162002 -153875156 - LTR16C LTR ERVL 0 491 7 409 282 103 78 chr3 64162113 64162214 -153874944 + L2 LINE L2 2916 3013 -300 2066 139 7 3 chr3 64162214 64162524 -153874634 + AluSq SINE Alu 1 311 -2 409 282 103 78 chr3 64162524 64162809 -153874349 + L2 LINE L2 3013 3312 -1 201 300 0 0 chr3 64162814 64162864 -153874294 + GA-rich Low_complexity Low_complexity 2 51 0 200 312 43 54 chr3 64163148 64163241 -153873917 - L2 LINE L2 -40 3232 3141 250 239 0 15 chr3 64163473 64163540 -153873618 - LTR67 LTR ERVL 0 557 492 215 231 8 34 chr3 64163633 64163750 -153873408 + CT-rich Low_complexity Low_complexity 1 114 0 568 269 43 10 chr3 64163801 64164009 -153873149 - LTR33 LTR ERVL -1 520 306 30 27 0 0 chr3 64164519 64164556 -153872602 + AT_rich Low_complexity Low_complexity 1 37 0 191 211 0 0 chr3 64165835 64165873 -153871285 + L2 LINE L2 3232 3269 -3 238 308 89 14 chr3 64166070 64166284 -153870874 - L2 LINE L2 -189 3124 2895 1524 162 31 43 chr3 64167329 64167656 -153869502 + MER33 DNA MER1_type 1 323 -1 375 271 47 16 chr3 64167798 64167927 -153869231 + MIR SINE MIR 39 171 -91 281 260 0 0 chr3 64168092 64168165 -153868993 + MIR SINE MIR 182 254 -8 2094 139 0 3 chr3 64171086 64171387 -153865771 - AluSx SINE Alu -12 300 1 283 323 141 10 chr3 64171506 64171704 -153865454 + L1ME LINE L1 5603 5826 -295 20650 52 6 3 chr3 64172715 64175315 -153861843 + L1P LINE L1 551 3157 -2989 294 73 0 0 chr3 64176427 64176468 -153860690 + (A)n Simple_repeat Simple_repeat 1 41 0 510 242 139 0 chr3 64177775 64177940 -153859218 - MER117 DNA MER1_type -3 194 7 29 0 0 0 chr3 64180044 64180073 -153857085 + AT_rich Low_complexity Low_complexity 1 29 0 482 304 30 18 chr3 64180282 64180450 -153856708 - MER117 DNA MER1_type -27 170 1 191 322 56 11 chr3 64180450 64180540 -153856618 - MIR3 SINE MIR -48 160 67 407 314 93 10 chr3 64180685 64180879 -153856279 - MIR SINE MIR -4 258 49 1194 207 9 0 chr3 64181360 64181577 -153855581 + AluJb SINE Alu 86 304 -8 839 273 46 3 chr3 64181980 64182262 -153854896 - L2 LINE L2 -216 3097 2804 1017 259 110 55 chr3 64182273 64182699 -153854459 + MLT1F1 LTR MaLR 1 461 -106 648 259 99 35 chr3 64182801 64183118 -153854040 - L2 LINE L2 -557 2757 2411 724 176 0 22 chr3 64183118 64183254 -153853904 + FLAM_A SINE Alu 1 133 0 648 259 99 35 chr3 64183254 64183311 -153853847 - L2 LINE L2 -903 2411 2359 194 91 30 0 chr3 64183311 64183344 -153853814 + GA-rich Low_complexity Low_complexity 3 36 0 698 244 79 47 chr3 64183344 64183684 -153853474 + L1MC5 LINE L1 7559 7909 -52 468 258 256 41 chr3 64183719 64184212 -153852946 - L2 LINE L2 -851 2463 1865 489 52 0 0 chr3 64184696 64184754 -153852404 + MER30 DNA MER1_type 1 58 -172 385 235 20 0 chr3 64184795 64184893 -153852265 + L2 LINE L2 2038 2137 -1177 964 106 75 38 chr3 64184906 64185066 -153852092 + MER30 DNA MER1_type 65 230 0 802 222 57 17 chr3 64185679 64185855 -153851303 - MER58A DNA MER1_type -2 222 40 1992 159 0 3 chr3 64185868 64186176 -153850982 - AluJb SINE Alu -5 307 1 3299 163 95 5 chr3 64186187 64186860 -153850298 + L1MB7 LINE L1 5255 5988 -196 232 287 38 76 chr3 64188080 64188237 -153848921 + L2 LINE L2 2948 3098 -215 270 97 16 48 chr3 64188342 64188404 -153848754 + (TTCC)n Simple_repeat Simple_repeat 4 63 0 326 366 35 7 chr3 64189989 64190131 -153847027 - L2 LINE L2 0 3272 3127 260 280 89 120 chr3 64190401 64190805 -153846353 + MLT1K LTR MaLR 19 411 -177 405 0 0 0 chr3 64190805 64190850 -153846308 + (TG)n Simple_repeat Simple_repeat 1 45 0 260 280 89 120 chr3 64190850 64190870 -153846288 + MLT1K LTR MaLR 411 430 -158 25 65 0 0 chr3 64191842 64191888 -153845270 + AT_rich Low_complexity Low_complexity 1 46 0 1853 123 0 86 chr3 64192085 64192411 -153844747 + AluSx SINE Alu 1 298 -14 2172 70 0 143 chr3 64192619 64192976 -153844182 + AluSg1 SINE Alu 1 306 -3 290 324 56 0 chr3 64194938 64195046 -153842112 + L2 LINE L2 3155 3268 -4 206 267 33 0 chr3 64195455 64195515 -153841643 + (TCCA)n Simple_repeat Simple_repeat 4 65 0 227 353 142 25 chr3 64195530 64195734 -153841424 - MIR SINE MIR -22 240 13 280 156 31 16 chr3 64195854 64195918 -153841240 + MIR SINE MIR 167 231 -31 4386 75 5 2 chr3 64196092 64196677 -153840481 + L1PA13 LINE L1 5577 6163 0 344 135 0 0 chr3 64196677 64196729 -153840429 + MSTD LTR MaLR 345 396 0 240 158 18 18 chr3 64196747 64196804 -153840354 + L2 LINE L2 3216 3272 0 250 254 0 0 chr3 64197372 64197439 -153839719 + A-rich Low_complexity Low_complexity 1 67 0 256 192 67 29 chr3 64201216 64201320 -153835838 + AluSq/x SINE Alu 15 122 -181 349 278 0 0 chr3 64201320 64201446 -153835712 + T-rich Low_complexity Low_complexity 1 126 0 557 164 20 14 chr3 64201568 64201714 -153835444 + GA-rich Low_complexity Low_complexity 3 149 0 299 288 158 7 chr3 64201801 64201947 -153835211 - L3 LINE CR1 -1 1576 1409 267 315 36 18 chr3 64205670 64205781 -153831377 + MIR SINE MIR 79 191 -71 2310 111 0 0 chr3 64206498 64206787 -153830371 - AluSx SINE Alu -23 289 1 378 0 0 0 chr3 64208401 64208443 -153828715 + (CA)n Simple_repeat Simple_repeat 2 43 0 2439 87 0 0 chr3 64209099 64209409 -153827749 - AluY SINE Alu -1 310 1 1135 351 74 8 chr3 64209915 64210581 -153826577 + L2 LINE L2 2260 2969 -345 374 312 0 0 chr3 64210707 64210816 -153826342 + L2 LINE L2 3164 3272 0 23 0 0 0 chr3 64212163 64212186 -153824972 + AT_rich Low_complexity Low_complexity 1 23 0 2009 144 0 7 chr3 64212192 64212483 -153824675 - AluSx SINE Alu -23 289 1 32 0 0 0 chr3 64212919 64212951 -153824207 + AT_rich Low_complexity Low_complexity 1 32 0 508 224 48 0 chr3 64213412 64213537 -153823621 - AluSp SINE Alu -181 132 2 216 0 0 0 chr3 64213733 64213757 -153823401 + (A)n Simple_repeat Simple_repeat 1 24 0 32 0 0 0 chr3 64213985 64214017 -153823141 + AT_rich Low_complexity Low_complexity 1 32 0 222 352 48 9 chr3 64214752 64214857 -153822301 + MIR3 SINE MIR 85 193 -15 393 308 30 12 chr3 64215744 64215913 -153821245 + MIR SINE MIR 18 189 -73 265 246 0 0 chr3 64215915 64215972 -153821186 + MER116 DNA Mariner 2 58 -22 180 271 0 17 chr3 64216389 64216448 -153820710 + MIR SINE MIR 61 118 -90 190 114 23 23 chr3 64216597 64216641 -153820517 + CT-rich Low_complexity Low_complexity 1 44 0 887 261 61 45 chr3 64216646 64216877 -153820281 - L2 LINE L2 -20 3293 3052 497 16 16 0 chr3 64216877 64216939 -153820219 + (GA)n Simple_repeat Simple_repeat 2 64 0 887 261 61 45 chr3 64216939 64217082 -153820076 - L2 LINE L2 -261 3052 2913 2100 121 0 10 chr3 64217417 64217715 -153819443 + AluSg SINE Alu 1 295 -15 189 196 0 0 chr3 64218305 64218351 -153818807 + (TATG)n Simple_repeat Simple_repeat 1 46 0 1487 232 12 11 chr3 64220877 64221251 -153815907 + MLT1E3 LTR MaLR 211 619 -5 22 70 0 0 chr3 64221706 64221749 -153815409 + AT_rich Low_complexity Low_complexity 1 43 0 3096 126 28 20 chr3 64221952 64222462 -153814696 - MER75 DNA T2_type 0 514 1 416 294 41 29 chr3 64222900 64223070 -153814088 - MIR SINE MIR -72 190 19 4389 255 98 69 chr3 64224160 64224812 -153812346 - L1MC4a LINE L1 -402 7406 6774 231 114 0 0 chr3 64224812 64224847 -153812311 + (TTA)n Simple_repeat Simple_repeat 2 36 0 4389 255 98 69 chr3 64224847 64226798 -153810360 - L1MC4a LINE L1 -1034 6774 4735 261 232 0 133 chr3 64228502 64228653 -153808505 - L1ME4a LINE L1 -56 6065 5935 251 214 71 0 chr3 64228630 64228714 -153808444 - L1MC4 LINE L1 -1339 6703 6614 * 226 152 0 0 chr3 64228722 64228768 -153808390 - LTR66 LTR ERVL -171 439 394 312 137 0 0 chr3 64228774 64228825 -153808333 + (CA)n Simple_repeat Simple_repeat 2 52 0 226 344 73 16 chr3 64229013 64229205 -153807953 - MIR SINE MIR -13 249 47 2493 75 10 0 chr3 64229336 64229643 -153807515 - AluY SINE Alu -1 310 1 324 355 137 42 chr3 64229852 64230261 -153806897 - L2 LINE L2 -5 3267 2820 1446 269 118 17 chr3 64231486 64232350 -153804808 + L2 LINE L2 2256 3210 -103 231 200 20 40 chr3 64232561 64232611 -153804547 - MIR SINE MIR -201 61 13 22 0 0 0 chr3 64232861 64232883 -153804275 + AT_rich Low_complexity Low_complexity 1 22 0 643 314 31 14 chr3 64234547 64234770 -153802388 + MIR SINE MIR 15 241 -21 27 0 0 0 chr3 64236618 64236645 -153800513 + AT_rich Low_complexity Low_complexity 1 27 0 198 261 43 14 chr3 64236933 64237002 -153800156 - MIR3 SINE MIR -18 190 120 290 311 64 64 chr3 64237977 64238212 -153798946 - MIR SINE MIR -20 242 8 222 331 13 51 chr3 64238367 64238449 -153798709 - MIR SINE MIR -15 247 172 1676 132 4 4 chr3 64238449 64238715 -153798443 + L1MA8 LINE L1 6022 6287 -4 222 331 13 51 chr3 64238715 64238789 -153798369 - MIR SINE MIR -90 172 97 548 247 34 133 chr3 64238806 64239158 -153798000 - MLT1I LTR MaLR -20 389 73 2079 131 10 7 chr3 64239294 64239600 -153797558 + AluSx SINE Alu 3 309 -3 2238 102 0 7 chr3 64241383 64241677 -153795481 + AluSc SINE Alu 1 292 -17 213 306 24 0 chr3 64242455 64242540 -153794618 + (CCA)n Simple_repeat Simple_repeat 2 88 0 266 322 54 7 chr3 64243035 64243184 -153793974 + L1MC/D LINE L1 5656 5811 -1997 965 295 91 35 chr3 64244375 64244955 -153792203 - L2 LINE L2 -25 3288 2666 357 301 0 0 chr3 64245044 64245127 -153792031 - L2 LINE L2 -654 2660 2578 248 249 94 83 chr3 64245127 64245308 -153791850 - MER5A DNA MER1_type 0 189 7 2498 203 27 25 chr3 64246904 64247460 -153789698 + MER74A LTR ERVL 1 557 -1 188 274 67 52 chr3 64247497 64247632 -153789526 + MIR SINE MIR 71 207 -55 213 313 47 0 chr3 64248481 64248545 -153788613 + L2 LINE L2 3199 3265 -7 260 331 49 33 chr3 64248891 64249075 -153788083 + L2 LINE L2 2701 2887 -427 233 313 137 52 chr3 64249080 64249313 -153787845 + L2 LINE L2 3049 3301 -12 1943 128 7 7 chr3 64250006 64250317 -153786841 - AluSx SINE Alu 0 311 1 950 208 65 12 chr3 64250317 64250562 -153786596 + AluJo SINE Alu 31 288 -24 433 320 6 6 chr3 64250677 64250849 -153786309 + L1ME4a LINE L1 4733 4904 -1242 636 165 118 8 chr3 64250858 64250985 -153786173 - FLAM_C SINE Alu -1 142 2 252 268 62 31 chr3 64250985 64251082 -153786076 + MIR SINE MIR 97 196 -66 270 352 19 19 chr3 64252421 64252526 -153784632 - L2 LINE L2 -5 3267 3163 399 119 0 0 chr3 64252585 64252639 -153784519 + (CA)n Simple_repeat Simple_repeat 1 121 0 399 119 0 0 chr3 64252639 64252706 -153784452 + (CA)n Simple_repeat Simple_repeat 2 68 0 1894 131 0 21 chr3 64253004 64253287 -153783871 - AluSx SINE Alu -2 310 34 1448 178 108 0 chr3 64253319 64253588 -153783570 - AluJb SINE Alu -14 298 1 387 333 93 32 chr3 64254347 64254492 -153782666 + L2 LINE L2 2552 2687 -626 2084 125 0 3 chr3 64254492 64254781 -153782377 + AluSx SINE Alu 1 288 -24 387 333 93 32 chr3 64254781 64255236 -153781922 + L2 LINE L2 2687 3201 -112 381 43 0 0 chr3 64255236 64255283 -153781875 + (CA)n Simple_repeat Simple_repeat 2 48 0 387 333 93 32 chr3 64255283 64255340 -153781818 + L2 LINE L2 3201 3253 -60 421 338 25 19 chr3 64255536 64255696 -153781462 - MIR SINE MIR -96 166 6 909 271 96 23 chr3 64255762 64256280 -153780878 + L1ME4a LINE L1 5349 5919 -202 264 30 0 0 chr3 64256284 64256317 -153780841 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 1047 123 0 0 chr3 64256316 64256479 -153780679 + (TA)n Simple_repeat Simple_repeat 1 163 0 241 213 69 88 chr3 64256480 64256640 -153780518 + L1ME4a LINE L1 5961 6117 -4 226 258 121 0 chr3 64256669 64256735 -153780423 - L2 LINE L2 -5 3267 3194 2114 114 0 0 chr3 64261656 64261936 -153775222 + AluSx SINE Alu 1 280 -32 221 0 0 33 chr3 64261938 64261968 -153775190 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 2352 105 0 0 chr3 64262437 64262741 -153774417 - AluY SINE Alu -7 304 1 655 116 0 0 chr3 64263239 64263325 -153773833 + AluS SINE Alu 2 87 -225 580 275 85 44 chr3 64263854 64264473 -153772685 + L1MEd LINE L1 694 1397 -4862 23857 90 7 1 chr3 64264540 64268618 -153768540 - L1PA7 LINE L1 -1 6153 2059 11903 206 63 74 chr3 64268619 64270668 -153766490 + L1P3 LINE L1 9 2079 -4382 2470 90 0 3 chr3 64270668 64270980 -153766178 - AluSq SINE Alu -2 311 1 11903 206 63 74 chr3 64270980 64274453 -153762705 + L1P3 LINE L1 2079 5707 -754 758 128 41 0 chr3 64274560 64274732 -153762426 + (CA)n Simple_repeat Simple_repeat 2 180 0 746 112 5 48 chr3 64274756 64274944 -153762214 + (CA)n Simple_repeat Simple_repeat 1 180 0 1395 247 99 23 chr3 64274956 64275502 -153761656 + L1ME3A LINE L1 5451 6058 -112 21 0 0 0 chr3 64275610 64275631 -153761527 + AT_rich Low_complexity Low_complexity 1 21 0 1288 199 20 69 chr3 64275635 64276233 -153760925 + MER4C LTR ERV1 1 465 0 368 194 65 19 chr3 64276234 64276342 -153760816 + L1MD3 LINE L1 7876 7988 -7 558 169 32 97 chr3 64276344 64276468 -153760690 - L1MA9 LINE L1 0 6292 6176 * 808 140 177 17 chr3 64276437 64276710 -153760448 - L1MA9 LINE L1 -181 6119 5787 3859 158 58 69 chr3 64276717 64277540 -153759618 + MER21B LTR ERV1 1 814 -49 584 176 24 32 chr3 64277573 64277719 -153759439 - L1ME LINE L1 -363 5799 5653 354 247 236 28 chr3 64278771 64278949 -153758209 - MIR SINE MIR -34 228 14 357 222 11 11 chr3 64279416 64279506 -153757652 - MIR SINE MIR -10 252 163 1234 222 80 68 chr3 64279509 64279836 -153757322 + MLT1D LTR MaLR 1 338 -167 2191 126 60 26 chr3 64279836 64280186 -153756972 - THE1B LTR MaLR 0 364 3 1234 222 80 68 chr3 64280186 64280357 -153756801 + MLT1D LTR MaLR 338 505 0 434 221 35 18 chr3 64280373 64280486 -153756672 - MIR SINE MIR -109 153 39 763 312 60 7 chr3 64280757 64281039 -153756119 + MLT1L LTR MaLR 4 300 -315 253 227 0 0 chr3 64281148 64281192 -153755966 + MLT1L LTR MaLR 474 517 -98 289 331 73 15 chr3 64281337 64281473 -153755685 - MIR3 SINE MIR -58 150 7 657 256 65 63 chr3 64281864 64282260 -153754898 + MLT1J1 LTR MaLR 17 409 0 297 262 202 36 chr3 64282282 64282450 -153754708 + L2 LINE L2 3117 3312 -1 1585 199 7 7 chr3 64282592 64282889 -153754269 - AluJo SINE Alu -14 298 2 1505 179 4 4 chr3 64282917 64283168 -153753990 + AluJb SINE Alu 47 297 -15 2132 132 0 16 chr3 64283218 64283521 -153753637 + AluSx SINE Alu 1 298 -14 187 327 0 0 chr3 64288952 64289007 -153748151 - MIR SINE MIR -4 258 204 5703 136 26 26 chr3 64289281 64291014 -153746144 - L1PA15 LINE L1 0 6165 4415 365 362 111 0 chr3 64291597 64291796 -153745362 + MIR SINE MIR 13 233 -29 22 0 0 0 chr3 64291915 64291937 -153745221 + AT_rich Low_complexity Low_complexity 1 22 0 950 194 24 39 chr3 64291985 64292191 -153744967 + MER3 DNA MER1_type 7 209 0 218 300 12 38 chr3 64292348 64292428 -153744730 + MIR SINE MIR 35 112 -150 381 233 44 53 chr3 64292717 64292889 -153744269 - MIR SINE MIR -56 206 30 317 296 38 53 chr3 64295102 64295234 -153741924 + MER5B DNA MER1_type 1 132 -57 359 225 0 56 chr3 64295116 64295205 -153741953 - MER5A DNA MER1_type 0 189 106 1894 157 13 3 chr3 64295238 64295538 -153741620 - AluJb SINE Alu -9 303 1 338 272 98 43 chr3 64296583 64296837 -153740321 + L1ME4a LINE L1 5107 5374 -772 458 337 50 14 chr3 64296840 64297119 -153740039 + L1ME4a LINE L1 5394 5682 -439 254 229 69 76 chr3 64297170 64297215 -153739943 + L1ME4a LINE L1 5797 5841 -280 2245 116 0 0 chr3 64297215 64297508 -153739650 + AluSq SINE Alu 1 293 -20 254 229 69 76 chr3 64297508 64297593 -153739565 + L1ME4a LINE L1 5841 5926 -195 7333 116 51 22 chr3 64298096 64299286 -153737872 - Tigger3b DNA MER2_type -6 1225 1 198 0 0 0 chr3 64299480 64299502 -153737656 + (TGG)n Simple_repeat Simple_repeat 1 22 0 188 61 61 0 chr3 64299980 64300013 -153737145 + A-rich Low_complexity Low_complexity 2 36 0 2161 99 17 13 chr3 64300255 64300557 -153736601 + AluSx SINE Alu 1 303 -9 186 43 0 0 chr3 64302019 64302042 -153735116 + (ATG)n Simple_repeat Simple_repeat 2 24 0 2378 260 82 80 chr3 64302042 64303426 -153733732 - L2 LINE L2 -6 3307 1911 2071 97 73 0 chr3 64303529 64303818 -153733340 - AluSg SINE Alu 0 310 1 319 335 40 20 chr3 64303855 64304007 -153733151 - MIR SINE MIR -18 244 90 217 195 13 13 chr3 64304048 64304125 -153733033 + CT-rich Low_complexity Low_complexity 2 78 0 2080 113 3 38 chr3 64305091 64305410 -153731748 + AluSg SINE Alu 3 310 0 355 281 0 0 chr3 64305532 64305614 -153731544 - MER119 DNA MER1_type -54 529 448 1096 264 87 7 chr3 64305648 64305958 -153731200 - MER119 DNA MER1_type -242 341 7 1188 188 77 0 chr3 64306215 64306423 -153730735 - MER58A DNA MER1_type 0 224 1 238 375 11 0 chr3 64306918 64307006 -153730152 - MIR SINE MIR -170 92 4 1259 208 18 5 chr3 64307064 64307285 -153729873 + MER58A DNA MER1_type 1 224 0 1972 199 46 39 chr3 64308102 64308279 -153728879 + MLT1C LTR MaLR 1 175 -292 2097 101 37 0 chr3 64308279 64308576 -153728582 + AluSq SINE Alu 1 308 -5 1972 199 46 39 chr3 64308576 64308855 -153728303 + MLT1C LTR MaLR 175 460 -7 459 339 96 5 chr3 64308924 64309142 -153728016 - MIR SINE MIR -23 239 2 1908 129 61 0 chr3 64310801 64311081 -153726077 - AluSx SINE Alu -13 299 3 297 0 0 0 chr3 64311233 64311266 -153725892 + (TG)n Simple_repeat Simple_repeat 1 33 0 182 309 103 0 chr3 64311349 64311417 -153725741 + MIR SINE MIR 51 125 -137 1765 156 17 17 chr3 64311444 64311745 -153725413 + AluSx SINE Alu 1 301 -11 2070 112 0 62 chr3 64311852 64312173 -153724985 - AluSx SINE Alu -11 301 1 284 48 24 0 chr3 64312267 64312309 -153724849 + (TC)n Simple_repeat Simple_repeat 1 43 0 199 275 127 63 chr3 64313791 64313933 -153723225 - L2 LINE L2 -245 3027 2877 2464 87 0 0 chr3 64314682 64314991 -153722167 - AluSg SINE Alu -1 309 1 334 326 121 0 chr3 64317227 64317359 -153719799 - MIR SINE MIR -8 254 107 296 267 22 0 chr3 64317477 64317567 -153719591 - L2 LINE L2 -2501 813 722 364 250 114 0 chr3 64317567 64317699 -153719459 + MER103 DNA DNA 17 163 -3 2216 297 143 14 chr3 64317950 64319065 -153718093 + L2 LINE L2 115 1373 -1941 276 30 0 0 chr3 64319106 64319139 -153718019 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 498 200 114 36 chr3 64320000 64320140 -153717018 - MER103 DNA DNA -2 164 14 241 275 66 33 chr3 64320208 64320299 -153716859 - MIR3 SINE MIR -48 160 67 298 286 135 8 chr3 64320335 64320461 -153716697 - MER117 DNA MER1_type -54 143 2 449 350 9 18 chr3 64320556 64320776 -153716382 - MIR SINE MIR -12 250 33 930 132 7 0 chr3 64323487 64323623 -153713535 + AluJo SINE Alu 5 141 -171 37 39 0 0 chr3 64323645 64323696 -153713462 + AT_rich Low_complexity Low_complexity 1 51 0 699 219 179 0 chr3 64324167 64324318 -153712840 - MER45A DNA AcHobo 0 178 1 1649 187 10 20 chr3 64325470 64325769 -153711389 - AluJb SINE Alu -16 296 1 23 54 0 0 chr3 64327093 64327130 -153710028 + AT_rich Low_complexity Low_complexity 1 37 0 1229 122 36 68 chr3 64327422 64327643 -153709515 + AluJb SINE Alu 86 299 -13 232 330 134 21 chr3 64330492 64330589 -153706569 - MIR SINE MIR -67 141 34 204 97 0 0 chr3 64331241 64331272 -153705886 + (CA)n Simple_repeat Simple_repeat 2 32 0 241 341 84 24 chr3 64331284 64331451 -153705707 - L2 LINE L2 -22 3291 3115 456 19 0 0 chr3 64331541 64331594 -153705564 + (CA)n Simple_repeat Simple_repeat 2 54 0 2490 64 0 0 chr3 64332973 64333284 -153703874 + AluY SINE Alu 1 311 0 299 322 11 0 chr3 64333533 64333623 -153703535 - L2 LINE L2 -9 3263 3173 370 307 33 33 chr3 64333958 64334108 -153703050 + MIR SINE MIR 79 228 -34 735 316 106 18 chr3 64334138 64334657 -153702501 - L2 LINE L2 -25 3288 2733 760 166 0 19 chr3 64334682 64334839 -153702319 - L1MA10 LINE L1 -910 5236 5083 * 5063 165 33 38 chr3 64334829 64335394 -153701764 + L1MA10 LINE L1 5219 5785 -549 1910 127 38 14 chr3 64335394 64335686 -153701472 - AluSx SINE Alu -13 299 1 5063 165 33 38 chr3 64335686 64336135 -153701023 + L1MA10 LINE L1 5785 6228 -106 2474 83 133 8 chr3 64336135 64336533 -153700625 + LTR7 LTR ERV1 1 448 -2 5063 165 33 38 chr3 64336533 64336619 -153700539 + L1MA10 LINE L1 6228 6313 -21 451 314 0 21 chr3 64337420 64337560 -153699598 - MIR SINE MIR -86 176 40 339 260 126 24 chr3 64338033 64338160 -153698998 - MIR SINE MIR -4 258 119 1458 259 158 46 chr3 64338342 64339038 -153698120 + LTR50 LTR ERVL 5 778 -17 264 292 62 56 chr3 64339281 64339459 -153697699 + MIR SINE MIR 18 196 -66 245 259 19 0 chr3 64340047 64340101 -153697057 + polypurine Low_complexity Low_complexity 2 56 0 473 255 126 62 chr3 64340276 64340355 -153696803 + L2 LINE L2 2670 2743 -570 2137 116 0 0 chr3 64340355 64340649 -153696509 + AluSx SINE Alu 6 299 -13 473 255 126 62 chr3 64340649 64341162 -153695996 + L2 LINE L2 2743 3313 0 626 305 107 17 chr3 64342342 64342575 -153694583 + MIR SINE MIR 9 262 0 1993 123 0 16 chr3 64342632 64342768 -153694390 + AluSx SINE Alu 1 138 -174 1886 144 0 10 chr3 64342768 64343066 -153694092 + AluSx SINE Alu 1 295 -17 1993 123 0 16 chr3 64343066 64343246 -153693912 + AluSx SINE Alu 138 312 0 1740 180 29 40 chr3 64343607 64343985 -153693173 + MLT1A2 LTR MaLR 1 374 0 2202 185 9 14 chr3 64344389 64344817 -153692341 + MSTB LTR MaLR 1 426 0 1382 209 104 0 chr3 64344975 64345282 -153691876 - MER58B DNA MER1_type -1 340 2 298 236 251 28 chr3 64345819 64346105 -153691053 + MLT1H1 LTR MaLR 171 502 -3 1717 206 31 18 chr3 64346136 64346565 -153690593 - MLT1E LTR MaLR 0 593 218 4237 86 25 20 chr3 64346565 64347169 -153689989 + L1PA11 LINE L1 5547 6153 -21 1062 76 0 0 chr3 64347184 64347329 -153689829 + (GGAA)n Simple_repeat Simple_repeat 4 148 0 495 212 197 5 chr3 64347334 64347525 -153689633 - MLT1E LTR MaLR -425 229 1 395 299 39 48 chr3 64347879 64348052 -153689106 - Charlie8 DNA MER1_type -51 290 106 2196 129 56 6 chr3 64348052 64348408 -153688750 + THE1C LTR MaLR 2 375 0 395 299 39 48 chr3 64348408 64348485 -153688673 - Charlie8 DNA MER1_type -235 106 30 642 204 167 0 chr3 64348593 64348755 -153688403 + MER5A DNA MER1_type 1 189 0 218 300 93 57 chr3 64350450 64350590 -153686568 + MER5A DNA MER1_type 45 189 0 5485 136 22 16 chr3 64351493 64352380 -153684778 + MER4D LTR ERV1 3 895 -8 3505 58 0 9 chr3 64353226 64353678 -153683480 + LTR7 LTR ERV1 1 448 -2 20168 96 32 14 chr3 64353680 64356612 -153680546 + HERVH LTR ERV1 1 2987 -4726 913 130 20 0 chr3 64356606 64356752 -153680406 + HERVH LTR ERV1 3140 3288 -4425 * 3481 108 4 6 chr3 64356755 64357257 -153679901 + HERVH LTR ERV1 3500 4000 -3713 * 4221 151 12 1 chr3 64357251 64357906 -153679252 + HERVH LTR ERV1 4488 5149 -2564 1483 110 18 9 chr3 64357907 64358125 -153679033 + HERVH LTR ERV1 5600 5819 -1894 * 2419 88 64 13 chr3 64358123 64358496 -153678662 + HERVH LTR ERV1 7322 7713 0 3527 62 0 7 chr3 64358496 64358947 -153678211 + LTR7 LTR ERV1 1 448 -2 693 251 122 27 chr3 64358950 64359213 -153677945 - L2 LINE L2 -124 3189 2902 215 194 0 0 chr3 64359395 64359431 -153677727 + (TGGA)n Simple_repeat Simple_repeat 1 36 0 916 222 74 28 chr3 64359628 64359710 -153677448 - MIR SINE MIR -16 246 169 1967 147 61 15 chr3 64359710 64360037 -153677121 + MER61A LTR ERV1 1 342 -1 916 222 74 28 chr3 64360037 64360170 -153676988 - MIR SINE MIR -93 169 21 345 162 88 0 chr3 64360327 64360395 -153676763 + MER96 DNA MER1_type? 102 175 0 1532 210 56 41 chr3 64360529 64360952 -153676206 + MER110A LTR ERV1 62 477 -14 189 107 0 0 chr3 64361873 64361901 -153675257 + (TG)n Simple_repeat Simple_repeat 2 29 0 297 0 0 0 chr3 64362194 64362227 -153674931 + (TG)n Simple_repeat Simple_repeat 2 34 0 2048 96 0 7 chr3 64362229 64362511 -153674647 - AluSx SINE Alu -32 280 1 442 211 0 0 chr3 64362854 64362944 -153674214 + MER103 DNA DNA 34 123 -43 471 310 39 0 chr3 64363301 64363430 -153673728 + MER45A DNA AcHobo 1 134 -44 250 345 176 7 chr3 64364064 64364212 -153672946 + MIR SINE MIR 2 174 -88 676 271 92 27 chr3 64364516 64364778 -153672380 + LTR33A LTR ERVL 228 506 -17 788 287 119 20 chr3 64364778 64365081 -153672077 + L2 LINE L2 2556 2888 -426 2201 87 20 0 chr3 64365180 64365480 -153671678 - AluY SINE Alu -5 306 1 181 271 34 34 chr3 64366259 64366318 -153670840 + L2 LINE L2 3195 3253 -19 288 77 0 0 chr3 64366707 64366746 -153670412 + (T)n Simple_repeat Simple_repeat 1 39 0 184 264 273 9 chr3 64367951 64368061 -153669097 - MIR SINE MIR -77 185 47 2402 49 0 13 chr3 64368786 64369090 -153668068 - AluY SINE Alu -11 300 1 1001 167 9 42 chr3 64369549 64369765 -153667393 - MER3 DNA MER1_type 0 209 1 631 290 126 35 chr3 64369854 64370327 -153666831 + MLT1K LTR MaLR 4 547 -41 2240 92 3 0 chr3 64370856 64371159 -153665999 + AluY SINE Alu 1 304 -7 395 309 26 0 chr3 64371161 64371289 -153665869 + MIR SINE MIR 30 160 -62 853 229 20 20 chr3 64373367 64373616 -153663542 - L1M4 LINE L1 -2058 4088 3840 14317 25 2 0 chr3 64373620 64376045 -153661113 - L1PA2 LINE L1 0 6155 3724 424 285 100 81 chr3 64377812 64378053 -153659105 - L2 LINE L2 -88 3225 2990 1533 132 0 0 chr3 64378053 64378280 -153658878 + AluSc SINE Alu 1 227 -82 424 285 100 81 chr3 64378280 64378503 -153658655 - L2 LINE L2 -323 2990 2733 192 125 0 0 chr3 64379015 64379047 -153658111 + (GA)n Simple_repeat Simple_repeat 1 32 0 25 65 0 0 chr3 64380282 64380328 -153656830 + AT_rich Low_complexity Low_complexity 1 46 0 476 250 95 0 chr3 64380328 64380476 -153656682 - MIR SINE MIR 0 262 101 186 324 14 0 chr3 64380884 64380955 -153656203 - L2 LINE L2 -944 2370 2299 4293 161 27 26 chr3 64381019 64381871 -153655287 + L1MB7 LINE L1 5188 6042 -142 576 86 11 32 chr3 64381871 64381958 -153655200 + L1MB8 LINE L1 6087 6177 -1 2340 109 0 0 chr3 64382033 64382335 -153654823 + AluSx SINE Alu 1 302 -10 2134 133 7 7 chr3 64383207 64383515 -153653643 - AluSx SINE Alu -2 310 3 428 345 25 20 chr3 64383655 64383852 -153653306 - MIR SINE MIR -15 247 50 2062 156 0 0 chr3 64384563 64384858 -153652300 + AluJb SINE Alu 1 295 -17 324 287 152 12 chr3 64385064 64385228 -153651930 + MIR SINE MIR 64 250 -12 189 316 53 0 chr3 64385278 64385354 -153651804 - MIR SINE MIR -95 167 88 222 37 0 0 chr3 64385455 64385482 -153651676 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 483 291 55 16 chr3 64385594 64385899 -153651259 - L2 LINE L2 -204 3068 2751 233 184 40 64 chr3 64385927 64386052 -153651106 - L1MC5 LINE L1 -37 7924 7803 1267 311 92 32 chr3 64386232 64387480 -153649678 - L2 LINE L2 -722 2592 1270 249 287 111 0 chr3 64388243 64388351 -153648807 + MIR SINE MIR 125 244 -18 341 264 101 31 chr3 64389195 64389324 -153647834 + MIR SINE MIR 99 236 -26 23 0 0 0 chr3 64389357 64389380 -153647778 + AT_rich Low_complexity Low_complexity 1 23 0 560 204 15 15 chr3 64389747 64389879 -153647279 + L2 LINE L2 3178 3309 -4 260 268 14 0 chr3 64389930 64390001 -153647157 - MIR SINE MIR -118 144 73 370 262 86 52 chr3 64390204 64390414 -153646744 + MIR SINE MIR 14 230 -32 223 254 25 102 chr3 64391093 64391211 -153645947 - MIR3 SINE MIR -85 123 15 247 316 31 0 chr3 64391908 64392006 -153645152 + MIR3 SINE MIR 61 161 -47 556 251 68 58 chr3 64392006 64392301 -153644857 - MER102a DNA MER1_type -1 329 32 189 0 0 0 chr3 64392739 64392760 -153644398 + (T)n Simple_repeat Simple_repeat 1 21 0 220 261 51 47 chr3 64392819 64392982 -153644176 - MIR SINE MIR -69 139 21 387 56 0 0 chr3 64393193 64393247 -153643911 + (GA)n Simple_repeat Simple_repeat 2 55 0 338 290 160 48 chr3 64393471 64393740 -153643418 + L2 LINE L2 3015 3313 0 240 296 20 20 chr3 64393876 64393974 -153643184 - MIR SINE MIR -77 131 34 2535 77 0 0 chr3 64394006 64394316 -153642842 + AluY SINE Alu 1 310 -1 371 282 180 20 chr3 64394589 64394834 -153642324 + L2 LINE L2 2989 3272 -41 317 235 22 52 chr3 64395919 64396055 -153641103 + L1M4 LINE L1 3086 3217 -2929 608 176 7 59 chr3 64396097 64396233 -153640925 - MER3 DNA MER1_type -82 127 46 407 290 87 22 chr3 64396331 64396562 -153640596 + L1M4 LINE L1 3253 3498 -2648 198 0 0 0 chr3 64396585 64396607 -153640551 + (A)n Simple_repeat Simple_repeat 1 22 0 2383 97 7 0 chr3 64396996 64397306 -153639852 - AluSx SINE Alu 0 312 1 430 343 52 0 chr3 64397489 64397661 -153639497 - MIR SINE MIR -3 259 79 2635 47 0 0 chr3 64398723 64399021 -153638137 - AluY SINE Alu -13 298 1 2255 117 3 0 chr3 64399095 64399404 -153637754 - AluSx SINE Alu -2 310 1 250 274 97 24 chr3 64399791 64399915 -153637243 - MIR SINE MIR -113 149 17 3148 143 21 21 chr3 64400540 64401109 -153636049 - LTR10A LTR ERV1 -21 612 1 479 216 322 0 chr3 64401173 64401344 -153635814 - MIR SINE MIR 0 262 37 210 239 22 0 chr3 64402499 64402545 -153634613 + GA-rich Low_complexity Low_complexity 1 47 0 258 296 22 52 chr3 64402930 64403065 -153634093 + L1MC5 LINE L1 7740 7870 -91 1475 182 107 9 chr3 64403065 64403383 -153633775 + MLT2D LTR ERVL 1 349 -65 2162 124 0 6 chr3 64403388 64403702 -153633456 - AluSx SINE Alu 0 312 1 450 0 0 0 chr3 64403921 64403971 -153633187 + (TTA)n Simple_repeat Simple_repeat 2 51 0 243 309 11 11 chr3 64404142 64404236 -153632922 - L3 LINE CR1 -859 718 625 476 30 194 0 chr3 64407139 64407206 -153629952 - MADE1 DNA Mariner 0 80 1 1905 147 3 3 chr3 64409300 64409593 -153627565 - AluJb SINE Alu -15 297 5 366 303 15 15 chr3 64409604 64409736 -153627422 - MIR SINE MIR -105 157 26 556 219 26 32 chr3 64410054 64410209 -153626949 + MIR SINE MIR 86 239 -23 213 202 146 34 chr3 64411247 64411336 -153625822 + L3b LINE CR1 1282 1380 -203 207 0 0 0 chr3 64412541 64412564 -153624594 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 325 294 117 18 chr3 64413355 64413518 -153623640 - MIR SINE MIR -75 187 9 195 224 143 0 chr3 64413726 64413775 -153623383 + MIR SINE MIR 29 84 -178 272 274 60 0 chr3 64414107 64414191 -153622967 + L2 LINE L2 3225 3313 0 2177 105 3 3 chr3 64414838 64415142 -153622016 - AluSq SINE Alu -9 304 1 302 211 132 13 chr3 64415909 64415985 -153621173 + MIR SINE MIR 14 98 -164 286 289 90 25 chr3 64416435 64416757 -153620401 - L1M4 LINE L1 -1887 4259 3917 228 309 35 39 chr3 64416935 64417165 -153619993 - L1M4 LINE L1 -2242 3904 3676 2243 86 3 64 chr3 64417219 64417532 -153619626 - AluSx SINE Alu -18 294 1 256 269 0 0 chr3 64418531 64418598 -153618560 + (CATATA)n Simple_repeat Simple_repeat 3 69 0 28 0 0 0 chr3 64418631 64418659 -153618499 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 64419639 64419667 -153617491 + AT_rich Low_complexity Low_complexity 1 28 0 246 236 0 18 chr3 64420456 64420511 -153616647 - MER115 DNA AcHobo 0 693 640 216 0 0 0 chr3 64420567 64420591 -153616567 + (CAA)n Simple_repeat Simple_repeat 1 24 0 337 267 0 23 chr3 64421036 64421137 -153616021 + CT-rich Low_complexity Low_complexity 1 100 -28 1642 191 3 20 chr3 64421137 64421482 -153615676 - AluJb SINE Alu 0 312 1 337 267 0 23 chr3 64421482 64421511 -153615647 + CT-rich Low_complexity Low_complexity 100 128 0 305 285 131 8 chr3 64423040 64423170 -153613988 - L2 LINE L2 -4 3309 3164 1383 249 117 25 chr3 64423258 64423965 -153613193 - L2 LINE L2 -157 3156 2383 2525 56 0 7 chr3 64424116 64424422 -153612736 + AluY SINE Alu 1 304 -7 1167 134 0 0 chr3 64424423 64424580 -153612578 + AluSg/x SINE Alu 135 291 -21 209 241 11 46 chr3 64424616 64424703 -153612455 - MIR SINE MIR -16 246 163 415 258 220 22 chr3 64425185 64425367 -153611791 + MIR SINE MIR 13 230 -32 4919 42 3 42 chr3 64425465 64426108 -153611050 + L1PA7 LINE L1 5534 6151 -3 524 307 90 45 chr3 64426201 64426445 -153610713 - Charlie8 DNA MER1_type -2159 258 4 796 279 34 34 chr3 64426492 64426783 -153610375 - MLT1I LTR MaLR -93 316 57 307 211 13 0 chr3 64427064 64427140 -153610018 + MER116 DNA Mariner 1 77 -3 21 0 0 0 chr3 64427140 64427161 -153609997 + AT_rich Low_complexity Low_complexity 1 21 0 359 178 25 0 chr3 64427677 64427768 -153609390 - MIR3 SINE MIR -2 206 112 181 323 46 0 chr3 64427776 64427841 -153609317 + L2 LINE L2 2656 2723 -591 661 291 132 25 chr3 64427937 64428383 -153608775 + L2 LINE L2 2820 3313 0 2345 118 131 8 chr3 64428485 64428866 -153608292 - MSTA LTR MaLR 0 428 1 507 219 0 35 chr3 64429614 64429728 -153607430 + L2 LINE L2 3204 3313 0 777 125 27 0 chr3 64430267 64430379 -153606779 + AluSg/x SINE Alu 190 304 -6 227 234 196 19 chr3 64432216 64432323 -153604835 - L2 LINE L2 -6 3266 3141 279 264 165 16 chr3 64433084 64433205 -153603953 - MIR SINE MIR -13 249 111 329 332 64 30 chr3 64433503 64433705 -153603453 + L2 LINE L2 2850 3058 -214 233 270 111 87 chr3 64433859 64433985 -153603173 - L3 LINE CR1 -254 1323 1195 26 30 0 0 chr3 64434171 64434204 -153602954 + AT_rich Low_complexity Low_complexity 1 33 0 1035 120 20 50 chr3 64434573 64434765 -153602393 - THE1B LTR MaLR 0 364 194 269 143 36 0 chr3 64434765 64434821 -153602337 + GA-rich Low_complexity Low_complexity 3 60 0 1264 65 0 0 chr3 64434837 64434992 -153602166 - AluY SINE Alu -11 300 146 622 110 250 15 chr3 64434992 64435128 -153602030 - THE1B LTR MaLR -207 168 1 776 212 8 0 chr3 64435134 64435266 -153601892 + MER58A DNA MER1_type 40 172 -52 588 199 21 84 chr3 64435268 64435459 -153601699 - MER53 DNA DNA 0 189 11 301 182 36 0 chr3 64435474 64435529 -153601629 + MER58A DNA MER1_type 168 224 0 324 0 0 0 chr3 64437233 64437269 -153599889 + (T)n Simple_repeat Simple_repeat 1 36 0 542 271 21 0 chr3 64439047 64439191 -153597967 - MIR SINE MIR -13 249 103 21 57 0 0 chr3 64439266 64439301 -153597857 + AT_rich Low_complexity Low_complexity 1 35 0 519 227 118 19 chr3 64442702 64442874 -153594284 - MIR SINE MIR -44 218 31 222 294 59 12 chr3 64443338 64443423 -153593735 - MIR SINE MIR -92 170 82 852 261 9 27 chr3 64443959 64444181 -153592977 + MIR SINE MIR 45 262 0 644 174 141 27 chr3 64444284 64444433 -153592725 + MER63A DNA MER1_type 42 207 -3 249 159 29 43 chr3 64444785 64444854 -153592304 + LTR67 LTR ERVL 469 536 -21 339 299 93 47 chr3 64444979 64445193 -153591965 - L3 LINE CR1 -156 1421 1198 311 301 103 15 chr3 64446275 64446478 -153590680 + MIR SINE MIR 40 260 -2 27 73 0 0 chr3 64446513 64446568 -153590590 + AT_rich Low_complexity Low_complexity 1 55 0 1103 173 103 169 chr3 64446794 64447308 -153589850 - LTR12 LTR ERV1 -234 480 1 298 224 0 71 chr3 64447823 64447908 -153589250 + MER116 DNA Mariner 1 79 -1 278 246 100 64 chr3 64448285 64448395 -153588763 + L2 LINE L2 3155 3268 -4 2247 93 0 27 chr3 64450190 64450490 -153586668 + AluSx SINE Alu 1 292 -20 21 0 0 0 chr3 64451296 64451317 -153585841 + AT_rich Low_complexity Low_complexity 1 21 0 424 324 59 36 chr3 64451793 64451872 -153585286 - MIR SINE MIR -8 254 178 3714 109 63 91 chr3 64451872 64452289 -153584869 - MER51A LTR ERV1 -1 633 239 2213 99 0 34 chr3 64452289 64452611 -153584547 - AluSq SINE Alu -2 311 1 3714 109 63 91 chr3 64452611 64452844 -153584314 - MER51A LTR ERV1 -395 239 1 424 324 59 36 chr3 64452844 64452986 -153584172 - MIR SINE MIR -84 178 28 264 100 0 0 chr3 64453098 64453138 -153584020 + (T)n Simple_repeat Simple_repeat 1 40 0 1356 183 30 4 chr3 64455686 64455916 -153581242 - MER46A DNA MER2_type 0 236 1 7575 47 7 3 chr3 64456694 64457969 -153579189 + L1PA7 LINE L1 4873 6150 -4 294 347 11 0 chr3 64458043 64458138 -153579020 - L2 LINE L2 -639 2675 2580 269 252 17 70 chr3 64458356 64458471 -153578687 - L1ME4a LINE L1 -58 6063 5955 2281 244 44 0 chr3 64458514 64459011 -153578147 - LTR40a LTR ERVL 0 519 1 377 309 113 16 chr3 64460061 64460255 -153576903 - L2 LINE L2 -5 3308 3096 485 315 119 48 chr3 64460310 64460875 -153576283 - L2 LINE L2 -342 2972 2368 1399 214 23 123 chr3 64461034 64461473 -153575685 + MSTD LTR MaLR 1 395 -1 259 218 0 0 chr3 64461482 64461537 -153575621 + (TGGA)n Simple_repeat Simple_repeat 4 58 0 554 182 0 6 chr3 64463121 64463145 -153574013 + GA-rich Low_complexity Low_complexity 2 25 -145 396 0 0 0 chr3 64463145 64463189 -153573969 + (TG)n Simple_repeat Simple_repeat 1 44 0 554 182 0 6 chr3 64463189 64463334 -153573824 + GA-rich Low_complexity Low_complexity 25 170 0 448 312 68 18 chr3 64464485 64464706 -153572452 - MIR SINE MIR -3 259 28 467 259 127 6 chr3 64464900 64465066 -153572092 - MIR SINE MIR 0 262 77 627 277 103 5 chr3 64465115 64465328 -153571830 + MIR SINE MIR 29 262 0 207 186 0 0 chr3 64465331 64465374 -153571784 + (CTA)n Simple_repeat Simple_repeat 1 43 0 1394 193 85 4 chr3 64465873 64466143 -153571015 - AluJb SINE Alu -20 292 1 347 82 0 0 chr3 64466216 64466265 -153570893 + L2 LINE L2 3265 3313 0 1114 240 123 54 chr3 64466757 64466866 -153570292 - L2 LINE L2 -4 3309 3209 1730 162 13 16 chr3 64466866 64467175 -153569983 - AluJo SINE Alu -2 310 3 1114 240 123 54 chr3 64467175 64467597 -153569561 - L2 LINE L2 -104 3209 2763 499 265 22 186 chr3 64468207 64468622 -153568536 + L2 LINE L2 2926 3272 0 365 308 39 8 chr3 64468651 64468781 -153568377 - MER117 DNA MER1_type -57 140 7 633 278 73 5 chr3 64472070 64472261 -153564897 - MIR SINE MIR -6 256 53 318 229 126 0 chr3 64473357 64473495 -153563663 - HAL1b LINE L1 -8 1340 1232 * 587 241 118 25 chr3 64473483 64473838 -153563320 - L1ME4a LINE L1 -175 5946 5563 712 291 107 13 chr3 64474032 64474331 -153562827 - L2 LINE L2 -5 3308 2982 21 0 0 0 chr3 64474479 64474500 -153562658 + AT_rich Low_complexity Low_complexity 1 21 0 505 297 62 26 chr3 64475055 64475247 -153561911 + MIR3 SINE MIR 1 199 -9 428 264 75 0 chr3 64475413 64475561 -153561597 - MIR SINE MIR -32 230 73 192 311 0 0 chr3 64475706 64475751 -153561407 + MIR SINE MIR 71 115 -93 2004 145 7 0 chr3 64476147 64476436 -153560722 + AluJb SINE Alu 1 291 -21 1086 51 0 0 chr3 64476440 64476489 -153560669 + (GAA)n Simple_repeat Simple_repeat 1 186 0 1086 51 0 0 chr3 64476489 64476626 -153560532 + (GAA)n Simple_repeat Simple_repeat 3 139 0 233 295 16 41 chr3 64480197 64480314 -153556844 - MIR SINE MIR -94 114 1 229 65 0 0 chr3 64482025 64482071 -153555087 - LTR66 LTR ERVL -171 439 394 198 103 0 0 chr3 64482071 64482100 -153555058 + (CA)n Simple_repeat Simple_repeat 2 30 0 521 288 85 50 chr3 64482105 64482529 -153554629 - L1ME4a LINE L1 -166 5955 5517 700 320 88 48 chr3 64482610 64483178 -153553980 + L3 LINE CR1 199 789 -788 2277 91 0 20 chr3 64483215 64483513 -153553645 + AluSq SINE Alu 1 292 -21 270 0 0 0 chr3 64483570 64483600 -153553558 + (TG)n Simple_repeat Simple_repeat 1 30 0 * 291 28 0 0 chr3 64483599 64483635 -153553523 + (GA)n Simple_repeat Simple_repeat 1 36 0 191 444 9 0 chr3 64484064 64484179 -153552979 + L3 LINE CR1 1426 1541 -36 312 316 134 19 chr3 64484579 64484848 -153552310 + L1MC4a LINE L1 5315 5614 -2194 228 271 47 35 chr3 64484985 64485070 -153552088 + L1MC4a LINE L1 5704 5789 -2019 261 289 0 24 chr3 64485070 64485153 -153552005 - L2 LINE L2 -38 3275 3195 301 244 92 23 chr3 64485159 64485290 -153551868 + L1MC4a LINE L1 5748 5887 -1921 241 211 46 83 chr3 64485357 64485466 -153551692 + HAL1 LINE L1 2398 2502 -5 243 337 30 20 chr3 64485812 64485913 -153551245 + MIR3 SINE MIR 96 197 -11 25 0 0 0 chr3 64487353 64487378 -153549780 + AT_rich Low_complexity Low_complexity 1 25 0 319 157 41 25 chr3 64487788 64487909 -153549249 + CT-rich Low_complexity Low_complexity 4 126 0 216 0 0 0 chr3 64487969 64487993 -153549165 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 310 279 59 13 chr3 64488725 64488857 -153548301 + MIR SINE MIR 13 152 -61 1771 172 0 17 chr3 64489284 64489580 -153547578 - AluJb SINE Alu -21 291 1 1823 149 54 0 chr3 64490020 64490141 -153547017 + AluSx SINE Alu 1 114 -198 206 32 32 0 chr3 64490141 64490172 -153546986 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 1823 149 54 0 chr3 64490172 64490345 -153546813 + AluSx SINE Alu 114 311 -1 1094 294 39 10 chr3 64490367 64490752 -153546406 - LTR16C LTR ERVL -23 468 73 216 0 0 0 chr3 64490850 64490874 -153546284 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 433 228 251 12 chr3 64491690 64491857 -153545301 + MIR SINE MIR 28 234 -28 312 355 44 77 chr3 64493059 64493425 -153543733 - L2 LINE L2 -9 3263 2910 213 306 191 24 chr3 64493482 64493691 -153543467 - L2 LINE L2 -528 2786 2543 21 0 0 0 chr3 64494177 64494198 -153542960 + AT_rich Low_complexity Low_complexity 1 21 0 228 304 214 45 chr3 64495832 64496121 -153541037 - L2 LINE L2 -2 3270 2933 458 310 33 56 chr3 64496187 64496418 -153540740 - MIR SINE MIR -34 228 3 294 95 0 0 chr3 64497262 64497304 -153539854 + (CACCAT)n Simple_repeat Simple_repeat 2 43 0 210 71 0 0 chr3 64498728 64498756 -153538402 + (CCA)n Simple_repeat Simple_repeat 2 29 0 427 306 12 6 chr3 64500727 64500887 -153536271 - MER103 DNA DNA -2 164 4 236 188 21 0 chr3 64502350 64502398 -153534760 + L2 LINE L2 3219 3267 -5 2368 102 0 0 chr3 64502724 64503028 -153534130 + AluSq SINE Alu 2 305 -8 219 213 21 0 chr3 64504873 64504931 -153532227 + (TA)n Simple_repeat Simple_repeat 1 59 0 261 0 0 0 chr3 64505129 64505158 -153532000 + (TA)n Simple_repeat Simple_repeat 1 29 0 261 0 0 0 chr3 64505158 64505187 -153531971 + (T)n Simple_repeat Simple_repeat 1 29 0 1094 43 0 29 chr3 64506906 64507046 -153530112 - AluSp/q SINE Alu -2 311 176 220 338 7 52 chr3 64508260 64508396 -153528762 + MIR SINE MIR 11 140 -122 755 187 20 0 chr3 64511484 64511634 -153525524 - Charlie4 DNA MER1_type 0 1961 1809 472 152 13 0 chr3 64511675 64511754 -153525404 - MER116 DNA Mariner 0 80 1 276 30 0 0 chr3 64512391 64512424 -153524734 + (TG)n Simple_repeat Simple_repeat 2 34 0 815 246 17 0 chr3 64515680 64515855 -153521303 + MER45A DNA AcHobo 1 178 0 818 314 119 36 chr3 64517095 64517985 -153519173 - L2 LINE L2 0 3313 2349 194 330 52 52 chr3 64518739 64518854 -153518304 - L2 LINE L2 -4 3268 3154 247 301 40 46 chr3 64519986 64520159 -153516999 + L3 LINE CR1 625 796 -781 342 0 0 0 chr3 64520252 64520290 -153516868 + (TAA)n Simple_repeat Simple_repeat 2 39 0 211 120 20 20 chr3 64520492 64520509 -153516649 + GA-rich Low_complexity Low_complexity 4 20 -33 2295 118 0 6 chr3 64520509 64520824 -153516334 + AluSp SINE Alu 1 313 0 211 120 20 20 chr3 64520824 64520856 -153516302 + GA-rich Low_complexity Low_complexity 19 53 0 233 267 92 30 chr3 64522231 64522362 -153514796 - L1ME4a LINE L1 -27 6094 5956 218 290 0 43 chr3 64522421 64522490 -153514668 + MIR SINE MIR 9 74 -188 207 0 0 0 chr3 64522904 64522927 -153514231 + (A)n Simple_repeat Simple_repeat 1 23 0 2456 82 0 0 chr3 64523126 64523429 -153513729 - AluSc SINE Alu -6 303 1 1306 199 40 27 chr3 64524375 64524671 -153512487 - AluJo SINE Alu -12 300 1 488 174 12 0 chr3 64524704 64524790 -153512368 + MER103 DNA DNA 8 94 -72 1654 144 64 28 chr3 64525308 64525635 -153511523 - Cheshire DNA MER1_type -30 2390 2052 1524 245 35 16 chr3 64525632 64525999 -153511159 - Cheshire DNA MER1_type -2044 376 3 * 663 254 16 11 chr3 64526000 64526185 -153510973 - MIR SINE MIR -46 216 31 666 225 33 70 chr3 64526485 64526729 -153510429 + MIR SINE MIR 28 262 0 236 118 0 0 chr3 64527801 64527835 -153509323 - L2 LINE L2 -9 3304 3271 206 317 155 19 chr3 64528288 64528449 -153508709 - MIR SINE MIR -60 202 20 24 0 0 0 chr3 64528595 64528619 -153508539 + AT_rich Low_complexity Low_complexity 1 24 0 899 151 38 75 chr3 64528670 64528856 -153508302 + MER20 DNA MER1_type 41 219 0 599 344 5 9 chr3 64528860 64529084 -153508074 + MIR SINE MIR 21 243 -19 261 286 0 0 chr3 64529409 64529479 -153507679 - MIR SINE MIR -41 221 152 405 345 0 7 chr3 64529806 64529951 -153507207 - MIR SINE MIR -98 164 21 1193 143 30 78 chr3 64529955 64530185 -153506973 - MER20 DNA MER1_type 0 219 1 494 227 80 18 chr3 64530500 64530663 -153506495 + MIR SINE MIR 9 181 -81 385 297 9 0 chr3 64530758 64530869 -153506289 + MIR SINE MIR 26 137 -125 2105 146 42 17 chr3 64531041 64531397 -153505761 - MLT1C LTR MaLR -102 365 1 309 172 16 16 chr3 64532487 64532551 -153504607 - MER5A DNA MER1_type -80 109 46 246 200 0 0 chr3 64532640 64532685 -153504473 - MER5A DNA MER1_type -136 53 9 206 270 48 0 chr3 64533304 64533367 -153503791 - MIR3 SINE MIR -15 193 128 191 158 26 0 chr3 64533734 64533772 -153503386 - L2 LINE L2 -14 3299 3261 749 286 28 21 chr3 64534229 64534519 -153502639 - L1MC4a LINE L1 -1884 5924 5633 1540 232 86 70 chr3 64535025 64535641 -153501517 + MLT1E2 LTR MaLR 1 626 0 533 277 9 61 chr3 64535766 64535979 -153501179 - MIR SINE MIR -12 250 49 200 373 55 0 chr3 64536600 64536710 -153500448 - L2 LINE L2 -1 3312 3197 209 277 30 50 chr3 64536846 64536947 -153500211 - L2 LINE L2 -233 3039 2941 1336 256 48 94 chr3 64538106 64538672 -153498486 + MLT1K LTR MaLR 5 544 -44 290 306 109 7 chr3 64538827 64538974 -153498184 - MIR SINE MIR -12 250 89 1945 164 0 13 chr3 64538976 64539280 -153497878 + AluJb SINE Alu 5 304 -8 1609 149 7 68 chr3 64540276 64540584 -153496574 + AluJo SINE Alu 3 291 -21 243 0 0 0 chr3 64540606 64540633 -153496525 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 359 280 85 26 chr3 64540717 64540906 -153496252 + MIR SINE MIR 56 255 -7 437 205 186 32 chr3 64541147 64541303 -153495855 - Charlie8 DNA MER1_type -2196 221 42 1222 255 91 50 chr3 64541387 64541850 -153495308 - LTR16C LTR ERVL -2 489 8 450 0 0 0 chr3 64543117 64543167 -153493991 + (CA)n Simple_repeat Simple_repeat 2 51 0 318 270 57 63 chr3 64543789 64543848 -153493310 + MIR SINE MIR 103 161 -101 2034 116 48 7 chr3 64543848 64544140 -153493018 - AluSg SINE Alu -6 304 1 318 270 57 63 chr3 64544140 64544239 -153492919 + MIR SINE MIR 161 260 -2 203 281 148 47 chr3 64545106 64545234 -153491924 - MIR3 SINE MIR -20 188 48 2053 113 0 50 chr3 64545571 64545890 -153491268 + AluSx SINE Alu 1 303 -9 378 275 103 55 chr3 64546030 64546303 -153490855 - L2 LINE L2 -1 3312 3027 188 359 28 28 chr3 64546999 64547144 -153490014 + MIR3 SINE MIR 14 158 -50 2357 96 0 3 chr3 64547172 64547473 -153489685 + AluSg SINE Alu 1 300 -10 393 128 51 26 chr3 64547501 64547579 -153489579 + MER103 DNA DNA 43 122 -44 484 351 29 8 chr3 64548256 64548498 -153488660 - MIR SINE MIR -14 248 2 180 179 0 0 chr3 64548574 64548613 -153488545 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 210 245 0 0 chr3 64549715 64549768 -153487390 + (TG)n Simple_repeat Simple_repeat 2 54 0 359 218 10 59 chr3 64549825 64549926 -153487232 + MIR SINE MIR 52 147 -115 557 244 15 8 chr3 64549928 64550059 -153487099 - L2 LINE L2 0 3313 3182 191 267 0 33 chr3 64550084 64550144 -153487014 + MIR SINE MIR 180 237 -25 25 0 0 0 chr3 64551546 64551571 -153485587 + AT_rich Low_complexity Low_complexity 1 25 0 313 298 113 13 chr3 64552104 64552255 -153484903 - MIR SINE MIR -11 251 86 298 282 43 17 chr3 64552515 64552632 -153484526 - MIR SINE MIR -105 157 38 23 54 0 0 chr3 64552895 64552932 -153484226 + AT_rich Low_complexity Low_complexity 1 37 0 772 247 0 0 chr3 64553056 64553222 -153483936 - MIR SINE MIR -24 238 73 2037 137 23 3 chr3 64554103 64554409 -153482749 + AluSx SINE Alu 1 312 0 212 211 96 0 chr3 64554615 64554667 -153482491 - L2 LINE L2 -1 3312 3256 241 222 0 0 chr3 64554735 64554780 -153482378 + MLT1J2 LTR MaLR 102 146 -304 2161 141 0 0 chr3 64555152 64555464 -153481694 - AluSx SINE Alu 0 312 1 795 304 66 47 chr3 64555466 64555831 -153481327 - MLT1K LTR MaLR -74 514 143 204 184 61 0 chr3 64557174 64557223 -153479935 - L2 LINE L2 -1 3312 3261 450 280 47 31 chr3 64558690 64558883 -153478275 + MIR SINE MIR 19 214 -48 1168 179 37 9 chr3 64559916 64560134 -153477024 + MER58A DNA MER1_type 1 224 0 426 286 43 12 chr3 64560277 64560438 -153476720 - MIR SINE MIR -81 181 16 2137 90 17 14 chr3 64560556 64560889 -153476269 + AluSx SINE Alu 1 312 0 2105 135 26 0 chr3 64561041 64561345 -153475813 + AluSx SINE Alu 1 312 0 2148 103 13 13 chr3 64561549 64561851 -153475307 + AluSc SINE Alu 1 302 -7 514 252 8 0 chr3 64562993 64563112 -153474046 + L2 LINE L2 3193 3312 -1 202 209 0 23 chr3 64563201 64563244 -153473914 - L2 LINE L2 -99 3173 3132 237 294 15 0 chr3 64563430 64563498 -153473660 - L2 LINE L2 0 3313 3245 229 262 16 0 chr3 64563551 64563612 -153473546 - L2 LINE L2 -3 3310 3249 211 158 18 18 chr3 64563880 64563937 -153473221 + CT-rich Low_complexity Low_complexity 1 57 0 510 333 0 5 chr3 64564665 64564854 -153472304 + MIR SINE MIR 23 210 -52 2323 81 3 0 chr3 64566263 64566572 -153470586 + AluSp SINE Alu 1 310 0 371 282 180 20 chr3 64566846 64567091 -153470067 + L2 LINE L2 2989 3272 -41 317 235 22 52 chr3 64568160 64568296 -153468862 + L1M4 LINE L1 3086 3217 -2929 608 176 7 59 chr3 64568338 64568474 -153468684 - MER3 DNA MER1_type -82 127 46 227 268 100 35 chr3 64568572 64568803 -153468355 + L1M4 LINE L1 3253 3498 -2648 198 0 0 0 chr3 64568826 64568848 -153468310 + (A)n Simple_repeat Simple_repeat 1 22 0 2426 90 7 0 chr3 64569236 64569546 -153467612 - AluSx SINE Alu 0 312 1 442 337 52 0 chr3 64569729 64569901 -153467257 - MIR SINE MIR -3 259 79 2635 47 0 0 chr3 64570964 64571262 -153465896 - AluY SINE Alu -13 298 1 2263 116 3 0 chr3 64571336 64571646 -153465512 - AluSx SINE Alu -1 311 1 250 274 97 24 chr3 64572033 64572157 -153465001 - MIR SINE MIR -113 149 17 3117 146 21 21 chr3 64572782 64573351 -153463807 - LTR10A LTR ERV1 -21 612 1 479 216 322 0 chr3 64573415 64573586 -153463572 - MIR SINE MIR 0 262 37 388 249 176 24 chr3 64578010 64578215 -153458943 - L1ME4a LINE L1 -72 6049 5814 589 220 115 26 chr3 64579900 64580122 -153457036 + MIR SINE MIR 28 260 -2 233 175 38 12 chr3 64580152 64580232 -153456926 + (TA)n Simple_repeat Simple_repeat 2 83 0 381 291 119 33 chr3 64581860 64582011 -153455147 + MIR SINE MIR 8 171 -91 2126 98 3 16 chr3 64582719 64583035 -153454123 - AluSx SINE Alu 0 312 1 232 182 0 136 chr3 64583280 64583346 -153453812 + Charlie4 DNA MER1_type 1899 1955 -6 420 115 77 26 chr3 64583706 64583784 -153453374 + MER53 DNA DNA 1 82 -107 527 274 17 17 chr3 64583873 64584048 -153453110 + L1MB8 LINE L1 6004 6178 0 1025 164 24 38 chr3 64586020 64586182 -153450976 - AluJb SINE Alu -25 287 127 387 0 0 0 chr3 64586182 64586225 -153450933 + (TG)n Simple_repeat Simple_repeat 2 44 0 1025 164 24 38 chr3 64586225 64586275 -153450883 - AluJb SINE Alu -185 127 78 763 187 107 27 chr3 64586442 64586629 -153450529 + MER20 DNA MER1_type 17 218 -1 204 122 0 0 chr3 64586647 64586688 -153450470 + (T)n Simple_repeat Simple_repeat 1 41 0 430 265 54 49 chr3 64587323 64587527 -153449631 - MLT1K LTR MaLR -324 264 60 197 344 33 22 chr3 64587597 64587687 -153449471 + MIR SINE MIR 60 150 -112 666 237 97 68 chr3 64589364 64589643 -153447515 + L2 LINE L2 2986 3272 0 1428 161 76 14 chr3 64591338 64591629 -153445529 + AluJo SINE Alu 3 311 -1 756 238 11 32 chr3 64591678 64591867 -153445291 + MER5A DNA MER1_type 5 189 0 649 274 31 26 chr3 64591991 64592217 -153444941 + L2 LINE L2 2687 2913 -401 2242 74 0 39 chr3 64593069 64593381 -153443777 - AluY SINE Alu -11 300 1 183 289 0 0 chr3 64594759 64594804 -153442354 + MIR SINE MIR 216 260 -2 788 201 30 24 chr3 64594883 64595047 -153442111 - AluJb SINE Alu -12 300 136 301 275 117 68 chr3 64595489 64595711 -153441447 + MER102b DNA MER1_type 106 338 -3 182 266 202 21 chr3 64595840 64595934 -153441224 - MER5B DNA MER1_type 0 178 68 393 293 57 0 chr3 64596783 64596889 -153440269 - MIR SINE MIR -67 141 30 486 329 24 0 chr3 64598211 64598378 -153438780 - MIR SINE MIR -11 251 81 308 337 167 16 chr3 64598962 64599208 -153437950 - L2 LINE L2 -5 3308 3026 2319 77 0 0 chr3 64599296 64599593 -153437565 - AluY SINE Alu -14 297 1 472 313 139 36 chr3 64599643 64599975 -153437183 - L1M4 LINE L1 -3378 2768 2403 295 251 104 47 chr3 64599977 64600139 -153437019 - L1M4 LINE L1 -3783 2363 2185 1696 175 14 0 chr3 64600139 64600431 -153436727 - AluJo SINE Alu -15 297 2 295 251 104 47 chr3 64600431 64600479 -153436679 - L1M4 LINE L1 -3961 2185 2141 498 335 24 0 chr3 64601564 64601731 -153435427 + MIR SINE MIR 80 250 -12 205 248 8 24 chr3 64601736 64601861 -153435297 + (ATGGTG)n Simple_repeat Simple_repeat 6 128 0 1627 179 0 7 chr3 64601948 64602259 -153434899 + AluSx SINE Alu 1 309 0 342 247 34 11 chr3 64603667 64603756 -153433402 + L2 LINE L2 3182 3272 0 428 198 74 41 chr3 64604817 64604938 -153432220 + MIR SINE MIR 48 172 -90 309 109 0 0 chr3 64605114 64605160 -153431998 + (CA)n Simple_repeat Simple_repeat 1 46 0 2136 106 0 0 chr3 64605601 64605894 -153431264 + AluSg SINE Alu 1 293 -17 646 289 74 32 chr3 64606182 64606559 -153430599 - L1ME LINE L1 -323 5798 5406 22 80 0 0 chr3 64606667 64606717 -153430441 + AT_rich Low_complexity Low_complexity 1 50 0 210 238 0 0 chr3 64607180 64607216 -153429942 - MIR SINE MIR 0 262 227 559 296 69 0 chr3 64607216 64607375 -153429783 + MER91B DNA MER1_type 1 170 -20 871 127 8 15 chr3 64607497 64607631 -153429527 - FLAM_C SINE Alu 0 133 1 391 218 164 9 chr3 64607631 64607741 -153429417 - MIR SINE MIR -113 149 23 455 298 36 28 chr3 64608781 64608975 -153428183 + MIR SINE MIR 49 246 -16 580 285 117 54 chr3 64609024 64609375 -153427783 + L1ME4a LINE L1 5514 5886 -284 1157 125 49 0 chr3 64609392 64609576 -153427582 + AluSp SINE Alu 118 310 -3 364 328 30 0 chr3 64609818 64609952 -153427206 + L1ME4a LINE L1 5957 6094 -27 686 271 94 25 chr3 64612322 64612566 -153424592 - MIR SINE MIR -1 261 1 538 267 167 14 chr3 64612611 64612821 -153424337 - MIR SINE MIR -12 250 9 708 74 0 0 chr3 64613132 64613227 -153423931 + (GGAA)n Simple_repeat Simple_repeat 4 98 0 212 139 0 23 chr3 64613240 64613283 -153423875 + (TTTTC)n Simple_repeat Simple_repeat 4 45 0 183 80 0 0 chr3 64613792 64613817 -153423341 + (GGAA)n Simple_repeat Simple_repeat 4 28 0 634 147 0 15 chr3 64613866 64614002 -153423156 + (GGAA)n Simple_repeat Simple_repeat 1 134 0 464 280 165 28 chr3 64614272 64614490 -153422668 - MIR SINE MIR -11 251 4 270 313 25 0 chr3 64614511 64614591 -153422567 - MIR SINE MIR -135 127 46 471 356 57 48 chr3 64615073 64615388 -153421770 - L2 LINE L2 -99 3173 2856 638 197 16 0 chr3 64616270 64616397 -153420761 + L2 LINE L2 2897 3025 -288 595 296 30 22 chr3 64616751 64617018 -153420140 + L1MC4a LINE L1 5656 5924 -1884 192 167 83 0 chr3 64617477 64617525 -153419633 + L2 LINE L2 3261 3312 -1 1065 244 176 11 chr3 64618231 64618588 -153418570 + L2 LINE L2 2897 3312 -1 472 30 194 0 chr3 64619169 64619236 -153417922 + MADE1 DNA Mariner 1 80 0 1921 187 55 119 chr3 64620112 64620699 -153416459 + MLT1H LTR MaLR 1 549 0 302 319 125 20 chr3 64620814 64621207 -153415951 - L2 LINE L2 -240 3073 2575 207 211 0 0 chr3 64621352 64621390 -153415768 + L2 LINE L2 3262 3299 -14 569 294 98 5 chr3 64622753 64622967 -153414191 + MIR SINE MIR 17 250 -12 2046 121 10 13 chr3 64622967 64623280 -153413878 - AluSq SINE Alu -1 312 1 503 216 48 71 chr3 64623308 64623484 -153413674 + MIR SINE MIR 64 234 -28 477 298 77 34 chr3 64623720 64623928 -153413230 - MIR SINE MIR -44 218 2 2016 128 0 13 chr3 64623991 64624304 -153412854 + AluSx SINE Alu 1 309 -3 353 256 80 73 chr3 64624630 64624767 -153412391 - MIR SINE MIR -68 194 57 256 281 67 61 chr3 64624735 64624899 -153412259 - L3 LINE CR1 -7 1570 1406 * 421 248 58 16 chr3 64625036 64625157 -153412001 + MIR SINE MIR 20 145 -63 573 245 73 13 chr3 64625930 64626081 -153411077 - MIR SINE MIR -8 254 95 319 114 0 0 chr3 64626283 64626327 -153410831 - MIR SINE MIR -139 123 80 439 325 125 10 chr3 64626586 64626786 -153410372 + MIR SINE MIR 37 259 -3 269 182 0 0 chr3 64627454 64627498 -153409660 - L2 LINE L2 -14 3299 3256 2361 174 51 79 chr3 64627498 64628044 -153409114 - MER74A LTR ERVL 0 558 28 301 326 12 12 chr3 64628063 64628149 -153409009 - L2 LINE L2 -53 3219 3134 2297 78 7 7 chr3 64628157 64628463 -153408695 - AluSc SINE Alu -3 306 1 183 80 0 0 chr3 64628535 64628560 -153408598 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1955 138 20 7 chr3 64629149 64629453 -153407705 + AluSx SINE Alu 1 308 -4 1875 279 80 14 chr3 64630243 64630941 -153406217 - L2 LINE L2 -261 3052 2316 24 32 0 0 chr3 64631220 64631251 -153405907 + AT_rich Low_complexity Low_complexity 1 31 0 476 288 293 12 chr3 64631630 64632280 -153404878 + L2 LINE L2 2445 3277 -36 1731 174 0 7 chr3 64632308 64632589 -153404569 + AluSx SINE Alu 1 279 -33 1607 145 25 33 chr3 64632590 64632866 -153404292 + AluSx SINE Alu 7 280 -32 315 0 0 0 chr3 64632866 64632901 -153404257 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 272 250 12 62 chr3 64632978 64633058 -153404100 + L2 LINE L2 3238 3313 0 322 284 68 0 chr3 64633108 64633196 -153403962 - MIR SINE MIR -164 98 5 1343 269 62 44 chr3 64634077 64634252 -153402906 - MLT1J LTR MaLR -4 507 337 1088 209 57 0 chr3 64634252 64634463 -153402695 + MER58A DNA MER1_type 2 224 0 1343 269 62 44 chr3 64634463 64634785 -153402373 - MLT1J LTR MaLR -174 337 1 434 238 87 58 chr3 64635363 64635535 -153401623 - MLT1K LTR MaLR 0 588 412 186 71 0 0 chr3 64635702 64635730 -153401428 + (TCTCTG)n Simple_repeat Simple_repeat 2 29 0 308 305 38 0 chr3 64635766 64635871 -153401287 - MLT1K LTR MaLR -358 230 122 1363 275 91 56 chr3 64636782 64636855 -153400303 - MLT1K LTR MaLR -2 586 517 2150 100 0 3 chr3 64636855 64637154 -153400004 + AluSq SINE Alu 1 298 -15 1363 275 91 56 chr3 64637154 64637632 -153399526 - MLT1K LTR MaLR -71 517 16 239 365 35 26 chr3 64638013 64638128 -153399030 - MIR SINE MIR -77 131 16 22 0 0 0 chr3 64638133 64638155 -153399003 + AT_rich Low_complexity Low_complexity 1 22 0 1246 233 80 11 chr3 64638538 64638890 -153398268 - MLT1H1 LTR MaLR -3 552 177 414 171 57 0 chr3 64638888 64638958 -153398200 + MER20 DNA MER1_type 146 219 0 * 686 239 51 0 chr3 64639015 64639153 -153398005 + MER58A DNA MER1_type 1 145 0 256 314 83 58 chr3 64640998 64641119 -153396039 - L2 LINE L2 -15 3257 3134 429 271 161 0 chr3 64641270 64641388 -153395770 - MIR SINE MIR -118 144 8 425 236 146 28 chr3 64641402 64641614 -153395544 - L2 LINE L2 -210 3062 2826 256 270 157 43 chr3 64642268 64642383 -153394775 + L2 LINE L2 3133 3260 -12 940 254 160 28 chr3 64642442 64642879 -153394279 - MLT1K LTR MaLR -13 575 81 273 313 107 0 chr3 64643650 64643762 -153393396 - MIR SINE MIR -131 131 8 269 302 66 19 chr3 64645009 64645115 -153392043 - MIR3 SINE MIR -3 205 95 260 220 40 60 chr3 64645322 64645422 -153391736 - L1ME4a LINE L1 -30 6091 5994 2347 68 0 0 chr3 64645514 64645809 -153391349 - AluY SINE Alu -16 295 1 241 247 13 78 chr3 64645856 64645933 -153391225 + MIR SINE MIR 152 223 -39 2065 173 0 0 chr3 64645988 64646295 -153390863 + AluSg SINE Alu 1 307 -3 24 32 0 0 chr3 64646459 64646490 -153390668 + AT_rich Low_complexity Low_complexity 1 31 0 257 309 15 52 chr3 64647294 64647430 -153389728 + L1MC5 LINE L1 7740 7870 -91 1479 182 107 9 chr3 64647430 64647748 -153389410 + MLT2D LTR ERVL 1 349 -65 2075 125 0 0 chr3 64647755 64648066 -153389092 - AluSx SINE Alu 0 312 2 303 224 15 15 chr3 64648100 64648167 -153388991 + L1MCa LINE L1 2002 2068 -4358 320 159 0 0 chr3 64648191 64648248 -153388910 + MLT2C1 LTR ERVL 350 397 0 2523 62 0 0 chr3 64648264 64648573 -153388585 - AluY SINE Alu -2 309 1 316 276 20 20 chr3 64648605 64648703 -153388455 + MIR SINE MIR 34 131 -77 447 295 153 39 chr3 64648838 64649119 -153388039 - L2 LINE L2 0 3313 3001 381 22 0 0 chr3 64649331 64649377 -153387781 + (TC)n Simple_repeat Simple_repeat 2 47 0 269 252 49 77 chr3 64649587 64649792 -153387366 + MIR SINE MIR 18 216 -46 180 0 0 0 chr3 64649810 64649830 -153387328 + (A)n Simple_repeat Simple_repeat 1 20 0 570 251 68 58 chr3 64650268 64650563 -153386595 + MER102b DNA MER1_type 43 340 -1 287 311 39 0 chr3 64650563 64650666 -153386492 - MIR3 SINE MIR -47 161 55 261 254 17 93 chr3 64651358 64651476 -153385682 + MIR3 SINE MIR 15 123 -85 457 262 86 52 chr3 64652155 64652365 -153384793 - MIR SINE MIR -32 230 14 225 325 72 0 chr3 64652559 64652642 -153384516 + MIR SINE MIR 60 148 -60 1055 239 117 33 chr3 64652690 64653084 -153384074 - L2 LINE L2 -4 3309 2883 491 275 100 33 chr3 64653972 64654212 -153382946 - L2 LINE L2 -582 2732 2477 354 356 100 0 chr3 64657177 64657357 -153379801 + MIR SINE MIR 59 256 -6 494 323 19 6 chr3 64658643 64658801 -153378357 - MIR3 SINE MIR -15 193 34 223 285 37 4 chr3 64659239 64659300 -153377858 + MIR SINE MIR 84 139 -69 29 0 0 0 chr3 64659423 64659452 -153377706 + AT_rich Low_complexity Low_complexity 1 29 0 319 255 32 11 chr3 64659482 64659576 -153377582 + MER103 DNA DNA 4 99 -67 2262 81 7 16 chr3 64659586 64659948 -153377210 + AluY SINE Alu 5 363 0 572 302 59 62 chr3 64662788 64663093 -153374065 - L2 LINE L2 -2 3270 2967 2151 99 19 16 chr3 64663279 64663591 -153373567 - AluSq SINE Alu 0 313 1 521 271 47 85 chr3 64664548 64664607 -153372551 - MIR SINE MIR 0 262 202 1662 162 21 7 chr3 64664607 64664897 -153372261 - AluJb SINE Alu -18 294 1 1311 170 122 37 chr3 64664897 64665168 -153371990 - AluJo SINE Alu -4 298 5 521 271 47 85 chr3 64665168 64665365 -153371793 - MIR SINE MIR -58 204 15 207 341 44 0 chr3 64665810 64665901 -153371257 + MIR SINE MIR 162 256 -6 374 294 49 14 chr3 64666349 64666492 -153370666 + L2 LINE L2 3163 3310 -3 638 263 28 37 chr3 64666600 64666817 -153370341 + MIR SINE MIR 48 262 0 196 338 0 26 chr3 64667032 64667109 -153370049 - MIR SINE MIR -94 114 40 985 216 77 0 chr3 64668868 64669076 -153368082 + MER58A DNA MER1_type 1 224 0 466 261 54 0 chr3 64669325 64669454 -153367704 - MIR3 SINE MIR -47 161 25 797 127 72 99 chr3 64670378 64670559 -153366599 + MER20 DNA MER1_type 1 176 -43 212 395 12 0 chr3 64670621 64670702 -153366456 + L2 LINE L2 3231 3312 -1 248 269 0 0 chr3 64670790 64670842 -153366316 + L2 LINE L2 3203 3254 -18 300 236 113 38 chr3 64671252 64671358 -153365800 - MIR SINE MIR -50 212 99 350 291 46 40 chr3 64671646 64671797 -153365361 + MIR SINE MIR 41 192 -70 660 307 21 17 chr3 64671947 64672188 -153364970 - MIR SINE MIR -1 261 20 340 159 16 16 chr3 64672186 64672249 -153364909 - L2 LINE L2 -1 3312 3250 * 2279 171 28 24 chr3 64672968 64673425 -153363733 - MLT1C LTR MaLR 0 467 9 422 344 65 46 chr3 64673598 64674058 -153363100 + L2 LINE L2 2804 3272 0 180 0 0 0 chr3 64674788 64674808 -153362350 + (A)n Simple_repeat Simple_repeat 1 20 0 527 299 28 28 chr3 64675141 64675318 -153361840 - MIR SINE MIR 0 262 86 264 214 0 18 chr3 64675410 64675466 -153361692 + MER20 DNA MER1_type 165 219 0 226 256 88 64 chr3 64675512 64675637 -153361521 + LTR27 LTR ERV1 395 522 -114 393 291 54 7 chr3 64675787 64675935 -153361223 - L2 LINE L2 -213 3059 2905 180 111 0 0 chr3 64676821 64676848 -153360310 + (GGAA)n Simple_repeat Simple_repeat 1 27 0 477 278 15 0 chr3 64678570 64678703 -153358455 + MER69 DNA AcHobo 12 146 -2380 386 208 0 13 chr3 64678699 64678776 -153358382 + MER69 DNA AcHobo 2449 2524 -2 * 1848 106 67 0 chr3 64678857 64679139 -153358019 - AluSx SINE Alu -11 301 1 1587 166 6 72 chr3 64679227 64679559 -153357599 - AluJb SINE Alu -2 310 1 1139 181 19 5 chr3 64681123 64681339 -153355819 + MER20 DNA MER1_type 1 219 0 2180 99 0 19 chr3 64681839 64682151 -153355007 - AluSx SINE Alu -6 306 1 231 336 93 31 chr3 64682284 64682510 -153354648 + MIR SINE MIR 21 260 -2 1080 137 0 0 chr3 64683778 64683946 -153353212 + AluSg/x SINE Alu 135 302 -8 504 275 34 28 chr3 64684200 64684378 -153352780 + L2 LINE L2 3107 3285 -28 1629 215 17 14 chr3 64684378 64684722 -153352436 - MLT1E2 LTR MaLR 0 626 282 26 36 0 0 chr3 64684840 64684868 -153352290 + AT_rich Low_complexity Low_complexity 1 28 0 1267 182 24 4 chr3 64684940 64685187 -153351971 - AluJb SINE Alu -54 258 7 318 127 109 0 chr3 64685193 64685248 -153351910 - MLT1E2 LTR MaLR -435 219 159 1771 164 0 3 chr3 64685373 64685665 -153351493 + AluJb SINE Alu 1 291 -21 284 333 33 17 chr3 64685790 64685910 -153351248 - L2 LINE L2 -218 3054 2933 21 0 0 0 chr3 64686318 64686339 -153350819 + AT_rich Low_complexity Low_complexity 1 21 0 326 298 18 9 chr3 64687673 64687787 -153349371 - L1ME4a LINE L1 -72 6049 5935 291 269 11 32 chr3 64691086 64691179 -153345979 - MLT1K LTR MaLR -52 536 446 239 271 13 13 chr3 64691250 64691405 -153345753 + CT-rich Low_complexity Low_complexity 1 155 0 285 258 32 32 chr3 64691415 64691508 -153345650 - MLT1K LTR MaLR -162 426 334 561 287 30 6 chr3 64691933 64692097 -153345061 - MIR3 SINE MIR -1 207 40 508 247 19 26 chr3 64692662 64692816 -153344342 - MIR SINE MIR -3 259 107 736 264 69 0 chr3 64692854 64693055 -153344103 - MIR SINE MIR -34 228 13 2311 105 32 32 chr3 64693854 64694227 -153342931 + THE1C LTR MaLR 1 373 -2 506 280 31 8 chr3 64694275 64694535 -153342623 + L1ME3A LINE L1 5820 6163 -7 2041 96 24 3 chr3 64694545 64694837 -153342321 + AluSp SINE Alu 1 298 -15 2015 134 10 0 chr3 64695010 64695315 -153341843 - AluSx SINE Alu 0 312 5 1718 179 7 0 chr3 64695338 64695640 -153341518 - AluJo SINE Alu -8 304 1 275 279 0 0 chr3 64695747 64695815 -153341343 + Charlie8 DNA MER1_type 1349 1416 -1001 325 256 156 78 chr3 64695818 64695998 -153341160 + MIR SINE MIR 57 250 -12 412 322 12 47 chr3 64698167 64698338 -153338820 + MIR SINE MIR 52 216 -46 298 340 11 11 chr3 64698656 64698750 -153338408 + MIR SINE MIR 25 118 -144 255 260 156 52 chr3 64699173 64699269 -153337889 + L2 LINE L2 3204 3309 -4 198 0 0 0 chr3 64699294 64699316 -153337842 + (TTTAA)n Simple_repeat Simple_repeat 3 24 0 2013 113 0 20 chr3 64699316 64699617 -153337541 - AluSx SINE Alu -17 295 1 592 333 106 53 chr3 64700303 64700738 -153336420 - MLT1K LTR MaLR -109 479 22 324 331 81 8 chr3 64700862 64700986 -153336172 + L2 LINE L2 3104 3236 -36 242 279 15 36 chr3 64701412 64701534 -153335624 + CT-rich Low_complexity Low_complexity 1 119 0 420 271 45 0 chr3 64701586 64701719 -153335439 + MIR SINE MIR 81 219 -43 215 256 0 0 chr3 64702173 64702216 -153334942 + L2 LINE L2 3225 3267 -5 4293 142 12 24 chr3 64703500 64704259 -153332899 + L1MA8 LINE L1 5541 6290 -1 26 30 0 0 chr3 64704261 64704294 -153332864 + AT_rich Low_complexity Low_complexity 1 33 0 350 32 0 145 chr3 64704451 64704473 -153332685 - MADE1 DNA Mariner -27 53 29 2042 112 14 0 chr3 64704473 64704768 -153332390 + AluSq SINE Alu 1 299 -14 350 32 0 145 chr3 64704768 64704807 -153332351 - MADE1 DNA Mariner -51 29 1 23 0 0 0 chr3 64705114 64705137 -153332021 + AT_rich Low_complexity Low_complexity 1 23 0 539 258 183 45 chr3 64705653 64705987 -153331171 - L2 LINE L2 0 3313 2934 296 188 29 29 chr3 64706028 64706097 -153331061 - L2 LINE L2 -534 2780 2712 461 201 84 78 chr3 64706454 64706608 -153330550 + MIR SINE MIR 107 261 -1 477 313 71 27 chr3 64706811 64707035 -153330123 - MIR SINE MIR -1 261 28 287 155 0 35 chr3 64707149 64707207 -153329951 + L1P LINE L1 4884 4939 -1207 384 283 80 7 chr3 64708229 64708367 -153328791 - L2 LINE L2 -25 3288 3141 266 240 93 0 chr3 64708845 64708920 -153328238 - MIR SINE MIR -169 93 12 351 65 0 0 chr3 64709985 64710031 -153327127 + (TG)n Simple_repeat Simple_repeat 2 47 0 251 111 0 22 chr3 64710860 64710905 -153326253 + (TTTC)n Simple_repeat Simple_repeat 4 47 0 211 174 65 22 chr3 64712690 64712736 -153324422 - L2 LINE L2 -4 3309 3262 204 97 0 0 chr3 64713792 64713823 -153323335 + (TG)n Simple_repeat Simple_repeat 2 32 0 252 302 35 35 chr3 64714333 64714449 -153322709 + MIR3 SINE MIR 42 157 -51 440 18 18 0 chr3 64714567 64714624 -153322534 + (TG)n Simple_repeat Simple_repeat 2 59 0 249 265 0 15 chr3 64716359 64716427 -153320731 + (TG)n Simple_repeat Simple_repeat 1 67 0 21 0 0 0 chr3 64720006 64720027 -153317131 + AT_rich Low_complexity Low_complexity 1 21 0 195 320 0 27 chr3 64723284 64723359 -153313799 - MIR3 SINE MIR -16 192 120 376 297 18 25 chr3 64724356 64724589 -153312569 + CT-rich Low_complexity Low_complexity 1 231 0 * 444 281 12 12 chr3 64724459 64724619 -153312539 + C-rich Low_complexity Low_complexity 2 161 0 413 216 128 16 chr3 64725239 64725364 -153311794 + MIR SINE MIR 64 202 -60 1305 181 4 40 chr3 64725439 64725716 -153311442 - AluJo SINE Alu -45 267 1 1764 218 60 107 chr3 64726685 64727303 -153309855 - MLT1E LTR MaLR -4 589 1 1525 182 0 29 chr3 64727331 64727639 -153309519 - AluJo SINE Alu 0 312 14 579 273 31 61 chr3 64728197 64728430 -153308728 + MIR SINE MIR 2 228 -34 531 324 67 45 chr3 64728647 64729051 -153308107 + L2 LINE L2 2881 3293 -20 21 36 0 0 chr3 64729448 64729476 -153307682 + AT_rich Low_complexity Low_complexity 1 28 0 753 279 101 16 chr3 64729850 64730276 -153306882 + L1ME4a LINE L1 5634 6095 -26 892 242 106 75 chr3 64730300 64730697 -153306461 - HAL1 LINE L1 0 2507 2087 1972 135 3 22 chr3 64730697 64731015 -153306143 - AluSx SINE Alu 0 312 1 892 242 106 75 chr3 64731015 64731163 -153305995 - HAL1 LINE L1 -420 2087 1945 675 244 38 45 chr3 64731172 64731287 -153305871 - HAL1 LINE L1 -959 1548 1434 240 59 0 0 chr3 64731287 64731321 -153305837 + (TG)n Simple_repeat Simple_repeat 2 35 0 675 244 38 45 chr3 64731321 64731496 -153305662 - HAL1 LINE L1 -1073 1434 1260 346 236 181 31 chr3 64731901 64732028 -153305130 + MIR SINE MIR 52 197 -65 250 300 0 14 chr3 64732130 64732200 -153304958 + CT-rich Low_complexity Low_complexity 4 72 0 208 256 23 0 chr3 64732227 64732270 -153304888 + C-rich Low_complexity Low_complexity 2 45 0 182 206 16 0 chr3 64732745 64732808 -153304350 + CT-rich Low_complexity Low_complexity 1 64 0 253 292 10 21 chr3 64732824 64732920 -153304238 + CT-rich Low_complexity Low_complexity 5 99 0 250 217 76 22 chr3 64733680 64733772 -153303386 - MIR3 SINE MIR -1 207 111 205 263 30 81 chr3 64733916 64734015 -153303143 + MIR SINE MIR 99 192 -70 325 194 28 0 chr3 64734024 64734096 -153303062 + MER116 DNA Mariner 2 75 -5 350 343 99 0 chr3 64735398 64735599 -153301559 - MIR SINE MIR -26 236 16 306 303 160 6 chr3 64735639 64735814 -153301344 + MIR SINE MIR 35 236 -26 206 258 62 41 chr3 64735816 64735913 -153301245 + MIR SINE MIR 6 104 -158 452 256 71 6 chr3 64735914 64736082 -153301076 + MIR SINE MIR 23 201 -61 28 0 0 0 chr3 64737030 64737058 -153300100 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr3 64737355 64737378 -153299780 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 276 91 0 0 chr3 64738299 64738343 -153298815 + (TA)n Simple_repeat Simple_repeat 2 45 0 23 0 0 0 chr3 64738808 64738831 -153298327 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr3 64740298 64740323 -153296835 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr3 64740762 64740787 -153296371 + AT_rich Low_complexity Low_complexity 1 25 0 1162 175 65 0 chr3 64741685 64741885 -153295273 - MER20 DNA MER1_type -3 216 4 713 258 62 21 chr3 64742043 64742283 -153294875 + MIR SINE MIR 7 256 -6 1010 221 135 33 chr3 64742416 64742719 -153294439 + MER102b DNA MER1_type 2 335 -6 1237 160 33 5 chr3 64742745 64742957 -153294201 - MER20 DNA MER1_type -1 218 1 237 245 0 0 chr3 64743047 64743100 -153294058 + L2 LINE L2 3219 3271 -1 193 344 22 11 chr3 64743119 64743209 -153293949 + MIR SINE MIR 59 149 -113 2174 107 13 0 chr3 64743396 64743694 -153293464 + AluSp SINE Alu 1 302 -11 255 211 47 94 chr3 64743791 64743919 -153293239 - MER103 DNA DNA -1 165 44 295 274 57 38 chr3 64744425 64744582 -153292576 - MIR SINE MIR -13 249 90 865 269 99 36 chr3 64744649 64745013 -153292145 + MLT1J2 LTR MaLR 64 450 0 212 246 33 0 chr3 64745306 64745367 -153291791 + MIR SINE MIR 60 122 -86 2065 116 43 32 chr3 64745451 64745822 -153291336 + THE1C LTR MaLR 1 375 0 728 313 61 46 chr3 64745827 64746239 -153290919 - L2 LINE L2 -19 3253 2836 1735 175 7 3 chr3 64746369 64746660 -153290498 + AluJb SINE Alu 1 292 -20 229 250 0 0 chr3 64747130 64747186 -153289972 - MIR SINE MIR -112 150 95 848 265 194 42 chr3 64747193 64747687 -153289471 - MLT1G1 LTR MaLR -7 588 20 1756 180 7 16 chr3 64747768 64748074 -153289084 + AluJo SINE Alu 3 305 -7 268 314 173 5 chr3 64748132 64748323 -153288835 + MIR SINE MIR 20 242 -20 314 203 14 14 chr3 64748781 64748855 -153288303 + MIR SINE MIR 79 152 -110 356 326 72 17 chr3 64748896 64749077 -153288081 - MIR SINE MIR -12 250 60 299 226 36 19 chr3 64749371 64749473 -153287685 + MIR SINE MIR 43 130 -78 228 263 26 26 chr3 64749785 64749861 -153287297 - MER39B LTR ERV1 -287 366 291 211 214 18 0 chr3 64749873 64749929 -153287229 + MIR SINE MIR 205 261 -1 220 226 151 0 chr3 64750228 64750334 -153286824 - L2 LINE L2 -1 3271 3150 324 256 89 0 chr3 64751098 64751188 -153285970 + MIR SINE MIR 46 143 -65 851 178 130 0 chr3 64751231 64751416 -153285742 - MER3 DNA MER1_type 0 209 1 277 335 40 7 chr3 64751916 64752068 -153285090 - MER5B DNA MER1_type -5 173 17 2985 149 42 16 chr3 64752252 64752801 -153284357 + L1MB1 LINE L1 5606 6168 0 324 289 130 21 chr3 64754083 64754367 -153282791 - L1M4 LINE L1 -3697 2449 2135 2167 105 3 43 chr3 64754370 64754849 -153282309 - AluSx SINE Alu 0 466 1 33 25 0 0 chr3 64755039 64755079 -153282079 + AT_rich Low_complexity Low_complexity 1 40 0 2578 102 16 8 chr3 64755417 64755789 -153281369 + THE1C LTR MaLR 1 375 0 241 266 98 139 chr3 64755845 64756089 -153281069 - L2 LINE L2 -194 3078 2845 29 28 0 0 chr3 64756805 64756841 -153280317 + AT_rich Low_complexity Low_complexity 1 36 0 257 277 207 11 chr3 64757082 64757270 -153279888 + MIR SINE MIR 31 255 -7 580 259 185 42 chr3 64757636 64758015 -153279143 + L1ME4a LINE L1 5623 6055 -66 1542 217 10 42 chr3 64758382 64758532 -153278626 - MLT1A2 LTR MaLR 0 374 221 1721 134 119 0 chr3 64758532 64758809 -153278349 - AluSx SINE Alu -2 310 1 1542 217 10 42 chr3 64758809 64759041 -153278117 - MLT1A2 LTR MaLR -153 221 4 456 247 139 24 chr3 64759238 64759404 -153277754 - MIR SINE MIR -38 224 40 377 234 207 28 chr3 64759423 64759568 -153277590 + MIR SINE MIR 20 190 -72 1162 185 114 24 chr3 64760413 64760502 -153276656 - MER33 DNA MER1_type -2261 324 244 2078 119 0 10 chr3 64760502 64760795 -153276363 + AluSx SINE Alu 7 296 -16 1162 185 114 24 chr3 64760795 64761002 -153276156 - MER33 DNA MER1_type -2341 244 1 266 345 136 14 chr3 64761624 64761844 -153275314 + MIR SINE MIR 4 250 -12 373 218 103 11 chr3 64762527 64762614 -153274544 - Charlie1 DNA MER1_type -2665 96 2 2063 125 3 10 chr3 64762711 64763007 -153274151 + AluSx SINE Alu 1 294 -18 191 306 35 24 chr3 64763020 64763105 -153274053 - L2 LINE L2 -303 2969 2884 770 202 77 0 chr3 64763718 64763901 -153273257 + MIR SINE MIR 18 214 -48 182 307 57 23 chr3 64763983 64764071 -153273087 - L3 LINE CR1 -4 1573 1483 242 208 21 0 chr3 64765156 64765204 -153271954 + MIR SINE MIR 204 252 -10 262 320 0 32 chr3 64765217 64765342 -153271816 - MIR SINE MIR -12 250 130 202 316 13 0 chr3 64765450 64765529 -153271629 + MIR SINE MIR 51 130 -132 265 359 0 15 chr3 64765611 64765742 -153271416 + MIR3 SINE MIR 65 193 -15 466 260 44 59 chr3 64765918 64766122 -153271036 + MIR SINE MIR 14 214 -48 183 222 127 16 chr3 64766197 64766260 -153270898 + L2 LINE L2 3204 3273 -40 265 266 96 11 chr3 64766292 64766386 -153270772 - MIR SINE MIR -57 151 50 548 299 119 18 chr3 64767220 64767548 -153269610 + L2 LINE L2 2235 2595 -719 1103 212 62 17 chr3 64767582 64767874 -153269284 - L1MA4 LINE L1 -14 6286 5982 188 163 143 0 chr3 64767907 64767956 -153269202 + L2 LINE L2 2922 2977 -337 1114 226 104 29 chr3 64768106 64768415 -153268743 - MER58B DNA MER1_type -7 334 3 380 195 0 122 chr3 64768418 64768503 -153268655 + L2 LINE L2 3191 3258 -55 1474 181 92 0 chr3 64768503 64768774 -153268384 + AluJb SINE Alu 1 296 -16 380 195 0 122 chr3 64768774 64768811 -153268347 + L2 LINE L2 3258 3298 -15 2313 107 7 0 chr3 64769054 64769363 -153267795 - AluSx SINE Alu -1 311 1 255 281 173 0 chr3 64770272 64770411 -153266747 + L1P4 LINE L1 5319 5481 -693 186 103 0 0 chr3 64770624 64770653 -153266505 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 853 274 9 9 chr3 64771878 64772104 -153265054 - MIR SINE MIR -16 246 21 233 209 0 90 chr3 64772280 64772347 -153264811 + L1ME4a LINE L1 5506 5566 -555 222 314 58 0 chr3 64772427 64772513 -153264645 + L2 LINE L2 3182 3272 0 361 249 110 74 chr3 64772529 64772919 -153264239 + L1ME4a LINE L1 5716 6119 -2 6316 72 11 2 chr3 64773369 64774655 -153262503 - L1PA11 LINE L1 -1 6173 4840 271 259 19 56 chr3 64775274 64775382 -153261776 + MER94 DNA DNA 1 104 -30 250 220 88 55 chr3 64775405 64775496 -153261662 - MIR SINE MIR -55 207 114 2297 92 7 0 chr3 64776096 64776390 -153260768 - AluY SINE Alu -15 296 1 2011 142 3 0 chr3 64776955 64777251 -153259907 - AluSx SINE Alu -7 305 9 354 41 0 0 chr3 64778885 64778934 -153258224 - AluSc SINE Alu -2 297 249 330 319 105 26 chr3 64779416 64779645 -153257513 - MIR SINE MIR -3 259 13 287 320 0 0 chr3 64780069 64780166 -153256992 + (TA)n Simple_repeat Simple_repeat 1 97 0 1110 221 147 60 chr3 64780970 64781085 -153256073 + MLT1H LTR MaLR 67 171 -378 2315 131 22 6 chr3 64781085 64781443 -153255715 - THE1B LTR MaLR 0 364 1 1110 221 147 60 chr3 64781443 64781729 -153255429 + MLT1H LTR MaLR 171 503 -46 495 287 51 37 chr3 64781984 64782200 -153254958 + MIR SINE MIR 25 243 -19 2121 115 0 10 chr3 64782263 64782559 -153254599 - AluSg SINE Alu -17 293 1 330 322 74 0 chr3 64782902 64783023 -153254135 + L2 LINE L2 3138 3267 -5 1236 278 104 15 chr3 64783412 64784034 -153253124 - L2 LINE L2 -157 3156 2479 567 248 98 4 chr3 64784338 64784584 -153252574 - MER113 DNA MER1_type? -48 473 205 1062 283 67 16 chr3 64784732 64785226 -153251932 - L1ME3A LINE L1 -5 6165 5647 572 246 19 31 chr3 64785233 64785510 -153251648 - L1ME3A LINE L1 -690 5472 5197 3229 203 110 3 chr3 64785610 64786593 -153250565 - L1ME LINE L1 -722 5513 4427 502 208 0 0 chr3 64786600 64786701 -153250457 + MLT1E2 LTR MaLR 526 626 0 827 272 45 33 chr3 64786701 64787186 -153249972 - L1ME LINE L1 -3363 2852 2362 2139 132 7 3 chr3 64787188 64787492 -153249666 - AluSx SINE Alu -7 305 1 1004 292 127 27 chr3 64787598 64788851 -153248307 - L1ME LINE L1 -4212 2184 807 318 212 20 10 chr3 64789436 64789535 -153247623 - MER113 DNA MER1_type? -301 220 121 362 343 60 8 chr3 64789709 64789843 -153247315 - MIR3 SINE MIR -53 155 15 22 0 0 0 chr3 64789994 64790016 -153247142 + AT_rich Low_complexity Low_complexity 1 22 0 354 23 0 0 chr3 64790034 64790077 -153247081 + (TG)n Simple_repeat Simple_repeat 1 43 0 508 304 63 30 chr3 64790865 64791135 -153246023 - L2 LINE L2 -7 3306 3028 202 227 118 109 chr3 64791177 64791287 -153245871 + MER5A DNA MER1_type 17 127 -62 * 220 311 22 0 chr3 64791234 64791324 -153245834 - MER5A DNA MER1_type -56 133 42 191 237 0 0 chr3 64791870 64791908 -153245250 - L3b LINE CR1 -12 1571 1534 259 335 19 25 chr3 64791950 64792111 -153245047 - MER117 DNA MER1_type -34 163 4 282 303 73 0 chr3 64792111 64792220 -153244938 - MIR3 SINE MIR -45 163 47 225 0 0 0 chr3 64792227 64792252 -153244906 + (T)n Simple_repeat Simple_repeat 1 25 0 369 217 70 5 chr3 64793380 64793563 -153243595 + MER58 DNA MER1_type 9 2415 -5 214 320 143 5 chr3 64794664 64794845 -153242313 - MIR SINE MIR -56 206 2 524 342 76 17 chr3 64795559 64795796 -153241362 + MIR SINE MIR 8 258 -4 539 102 11 0 chr3 64796159 64796247 -153240911 + (TA)n Simple_repeat Simple_repeat 2 90 0 2290 95 13 19 chr3 64797786 64798101 -153239057 + AluSq SINE Alu 1 313 0 411 319 132 6 chr3 64798379 64798561 -153238597 + MIR SINE MIR 3 207 -55 286 300 56 47 chr3 64799193 64799426 -153237732 - MLT1K LTR MaLR -200 388 154 1878 165 24 3 chr3 64800210 64800549 -153236609 - MLT1A1 LTR MaLR -2 363 18 439 307 97 11 chr3 64800565 64800741 -153236417 - MIR SINE MIR -31 231 41 2299 103 3 0 chr3 64800950 64801251 -153235907 - AluSx SINE Alu -10 302 1 373 278 32 24 chr3 64801736 64801862 -153235296 + MIR SINE MIR 13 139 -123 284 256 105 12 chr3 64804280 64804366 -153232792 + MER91B DNA MER1_type 90 183 -7 202 217 65 0 chr3 64804436 64804482 -153232676 + L2 LINE L2 3263 3311 -2 222 283 0 17 chr3 64804749 64804809 -153232349 + L2 LINE L2 3173 3231 -82 2076 95 20 0 chr3 64804914 64805210 -153231948 - L1PA8 LINE L1 0 6172 5871 239 316 51 31 chr3 64805210 64805308 -153231850 + L2 LINE L2 3213 3312 -1 191 324 93 29 chr3 64806423 64806562 -153230596 - L3 LINE CR1 -1132 445 298 5999 105 39 54 chr3 64806563 64807903 -153229255 - L1PA14 LINE L1 0 6161 4815 2674 167 16 9 chr3 64807909 64808453 -153228705 + L1PA14 LINE L1 4261 4808 -1338 1525 306 116 31 chr3 64808760 64809919 -153227239 + L2 LINE L2 2034 3313 0 26 50 0 0 chr3 64810736 64810776 -153226382 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr3 64811089 64811117 -153226041 + AT_rich Low_complexity Low_complexity 1 28 0 347 275 123 48 chr3 64811179 64811387 -153225771 - L1ME LINE L1 -502 5660 5469 1706 169 23 29 chr3 64811387 64811695 -153225463 - AluJo SINE Alu -6 306 1 347 275 123 48 chr3 64811695 64811861 -153225297 - L1ME LINE L1 -693 5469 5258 40711 46 12 2 chr3 64812178 64818268 -153218890 - L1PA4 LINE L1 -2 6153 3 21 89 0 0 chr3 64818305 64818361 -153218797 + AT_rich Low_complexity Low_complexity 1 56 0 23 0 0 0 chr3 64818731 64818754 -153218404 + AT_rich Low_complexity Low_complexity 1 23 0 321 208 0 0 chr3 64820651 64820728 -153216430 + CT-rich Low_complexity Low_complexity 2 78 0 2091 109 0 7 chr3 64820733 64821017 -153216141 - AluSx SINE Alu -8 304 23 629 81 0 20 chr3 64821121 64821220 -153215938 - L1P LINE L1 -6047 99 3 315 316 78 62 chr3 64821221 64821358 -153215800 - L1M4 LINE L1 -3150 2996 2863 2009 97 6 78 chr3 64821358 64821679 -153215479 + AluSq SINE Alu 1 298 -15 315 316 78 62 chr3 64821679 64821848 -153215310 - L1M4 LINE L1 -3283 2863 2685 376 312 81 29 chr3 64821936 64822008 -153215150 - L1M4 LINE L1 -3558 2588 2521 2001 124 11 0 chr3 64822008 64822275 -153214883 - AluSx SINE Alu -16 296 27 376 312 81 29 chr3 64822275 64822622 -153214536 - L1M4 LINE L1 -3625 2521 2147 2408 220 98 26 chr3 64822669 64823345 -153213813 - L1ME2 LINE L1 -1 6163 5414 2452 88 0 0 chr3 64823345 64823652 -153213506 - AluY SINE Alu -4 307 1 2408 220 98 26 chr3 64823652 64823810 -153213348 - L1ME2 LINE L1 -750 5414 5269 918 186 0 13 chr3 64823820 64823976 -153213182 - FRAM SINE Alu -23 153 1 1943 245 87 22 chr3 64823983 64824812 -153212346 - L1ME2 LINE L1 -895 5251 4369 * 2261 186 26 2 chr3 64824808 64825277 -153211881 - L1MC3 LINE L1 0 7785 7306 316 335 20 20 chr3 64826206 64826409 -153210749 - HAL1 LINE L1 -811 1696 1494 2021 157 0 0 chr3 64826636 64826935 -153210223 + AluSx SINE Alu 5 303 -9 21 57 0 0 chr3 64827159 64827194 -153209964 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr3 64827315 64827347 -153209811 + AT_rich Low_complexity Low_complexity 1 32 0 30 27 0 0 chr3 64827382 64827419 -153209739 + AT_rich Low_complexity Low_complexity 1 37 0 670 282 68 60 chr3 64828007 64828551 -153208607 - L1ME3 LINE L1 -234 5919 5358 923 267 126 59 chr3 64828920 64830109 -153207049 - L1ME3 LINE L1 -2214 3915 2626 1563 170 53 0 chr3 64830109 64830392 -153206766 - AluJb SINE Alu -14 298 1 923 267 126 59 chr3 64830392 64830538 -153206620 - L1ME3 LINE L1 -3503 2626 2491 303 332 87 31 chr3 64830556 64830878 -153206280 - L1ME3 LINE L1 -4048 2262 1923 324 279 83 16 chr3 64831228 64831482 -153205676 - L1ME3 LINE L1 -4713 1597 1327 421 246 68 26 chr3 64831520 64831711 -153205447 - L1ME3 LINE L1 -4936 1183 985 238 139 0 47 chr3 64832775 64832818 -153204340 + MLT1L LTR MaLR 171 211 -404 636 224 41 14 chr3 64832904 64833051 -153204107 + MLT1K LTR MaLR 357 507 -81 2209 135 3 35 chr3 64833074 64833422 -153203736 - MER1B DNA MER1_type 0 337 1 935 206 80 5 chr3 64834051 64834111 -153203047 - MER20 DNA MER1_type 0 219 165 1595 197 3 23 chr3 64834111 64834415 -153202743 - AluJo SINE Alu -14 298 1 935 206 80 5 chr3 64834415 64834553 -153202605 - MER20 DNA MER1_type -54 165 6 374 251 110 36 chr3 64834709 64834928 -153202230 + MIR SINE MIR 20 254 -8 2313 128 0 0 chr3 64835106 64835418 -153201740 + AluSx SINE Alu 1 312 0 344 340 62 31 chr3 64835506 64835765 -153201393 - Charlie8 DNA MER1_type -2150 267 1 31 68 0 0 chr3 64836794 64836853 -153200305 + AT_rich Low_complexity Low_complexity 1 59 0 193 358 37 0 chr3 64837246 64837327 -153199831 - L2 LINE L2 0 3313 3230 4361 229 102 36 chr3 64837394 64838637 -153198521 + L1MDa LINE L1 11 1464 -5079 201 311 66 0 chr3 64839008 64839069 -153198089 + L2 LINE L2 3206 3270 -2 373 18 0 36 chr3 64839229 64839285 -153197873 + (TG)n Simple_repeat Simple_repeat 2 55 0 260 139 111 14 chr3 64839820 64839892 -153197266 - MIR SINE MIR -106 156 78 546 312 57 36 chr3 64840907 64841208 -153195950 + L2 LINE L2 3005 3311 -2 459 0 0 0 chr3 64841599 64841650 -153195508 + (TG)n Simple_repeat Simple_repeat 1 51 0 854 292 127 42 chr3 64841737 64842265 -153194893 - MLT1K LTR MaLR -13 575 3 326 314 57 16 chr3 64842317 64842441 -153194717 + MER117 DNA MER1_type 21 149 -48 327 325 40 0 chr3 64842805 64842931 -153194227 - L2 LINE L2 -10 3262 3132 401 335 57 16 chr3 64843183 64843377 -153193781 - MIR SINE MIR -52 210 9 4122 100 69 45 chr3 64843513 64844241 -153192917 - Tigger3(Golem) DNA MER2_type -1 3028 2284 563 156 125 0 chr3 64844241 64844337 -153192821 - Tigger3(Golem) DNA MER2_type -2921 108 1 216 86 0 0 chr3 64844813 64844848 -153192310 + (TG)n Simple_repeat Simple_repeat 1 35 0 1114 284 39 32 chr3 64845646 64846101 -153191057 - MLT1K LTR MaLR -26 562 35 239 316 106 82 chr3 64846228 64846604 -153190554 - L2 LINE L2 0 3272 2888 307 318 102 46 chr3 64849086 64849369 -153187789 + L2 LINE L2 2398 2696 -618 225 275 101 0 chr3 64849372 64849441 -153187717 - LTR33 LTR ERVL -183 338 263 233 57 29 0 chr3 64849478 64849513 -153187645 + (TGAA)n Simple_repeat Simple_repeat 2 37 0 618 259 31 12 chr3 64849530 64849692 -153187466 - LTR33 LTR ERVL -343 178 14 4401 73 0 0 chr3 64850350 64850896 -153186262 - MER41A LTR ERV1 -8 546 1 221 149 27 40 chr3 64850915 64850989 -153186169 + CT-rich Low_complexity Low_complexity 4 76 0 22 0 0 0 chr3 64851055 64851077 -153186081 + AT_rich Low_complexity Low_complexity 1 22 0 2204 134 40 12 chr3 64852309 64852638 -153184520 - MER1B DNA MER1_type 0 339 2 530 267 20 0 chr3 64852960 64853110 -153184048 + MIR SINE MIR 12 164 -98 4681 184 30 13 chr3 64853111 64854844 -153182314 + L1MB3 LINE L1 4284 6087 -96 1109 125 6 6 chr3 64854845 64855013 -153182145 - THE1B LTR MaLR 0 364 197 * 1186 98 0 201 chr3 64855010 64855087 -153182071 - THE1B LTR MaLR -119 245 154 2486 65 9 0 chr3 64855087 64855411 -153181747 + L1PA3 LINE L1 5813 6139 -16 1186 98 0 201 chr3 64855411 64855446 -153181712 - THE1B LTR MaLR -210 154 114 2259 101 0 0 chr3 64855446 64855734 -153181424 - AluY SINE Alu -23 288 1 1186 98 0 201 chr3 64855734 64855884 -153181274 - THE1B LTR MaLR -250 114 35 636 122 0 0 chr3 64855901 64855999 -153181159 + L1MB3 LINE L1 6084 6181 -2 787 311 23 5 chr3 64856064 64856283 -153180875 - MER58A DNA MER1_type 0 224 2 212 184 0 0 chr3 64858009 64858047 -153179111 - L2 LINE L2 -15 3298 3261 685 286 24 40 chr3 64858158 64858410 -153178748 - MIR SINE MIR -3 259 12 4737 88 0 0 chr3 64859046 64859669 -153177489 + L1PA13 LINE L1 5522 6144 -19 7171 60 28 0 chr3 64859702 64860575 -153176583 + MER11D LTR ERVK 1 897 0 468 70 0 0 chr3 64860587 64860644 -153176514 + MER11D LTR ERVK 841 897 0 2450 94 0 0 chr3 64860838 64861145 -153176013 - AluSx SINE Alu -5 307 1 306 0 0 0 chr3 64862415 64862449 -153174709 + (CA)n Simple_repeat Simple_repeat 2 35 0 21 36 0 0 chr3 64866431 64866459 -153170699 + AT_rich Low_complexity Low_complexity 1 28 0 339 25 0 0 chr3 64867313 64867353 -153169805 + (TCCA)n Simple_repeat Simple_repeat 2 41 0 2259 206 72 25 chr3 64867418 64867948 -153169210 + MER74A LTR ERVL 1 555 -3 499 268 27 7 chr3 64868349 64868390 -153168768 + MIR SINE MIR 6 45 -209 2806 10 0 0 chr3 64868390 64868690 -153168468 - AluYa5 SINE Alu -11 300 1 499 268 27 7 chr3 64868690 64868834 -153168324 + MIR SINE MIR 45 192 -62 7015 64 13 31 chr3 64868992 64870147 -153167011 - L1PA12 LINE L1 0 6168 5021 574 151 151 25 chr3 64870549 64870668 -153166490 + FLAM_C SINE Alu 2 135 -8 2194 121 0 3 chr3 64870668 64870966 -153166192 + AluSc SINE Alu 1 297 -12 455 288 200 9 chr3 64871222 64871437 -153165721 - MIR SINE MIR -1 261 6 291 252 59 8 chr3 64871936 64872072 -153165086 + MIR SINE MIR 17 163 -63 331 252 58 0 chr3 64872668 64872771 -153164387 + MIR SINE MIR 40 148 -114 5811 161 12 11 chr3 64872830 64874722 -153162436 + L1PB3 LINE L1 4265 6154 0 427 241 162 11 chr3 64874790 64874981 -153162177 - LTR16C LTR ERVL -10 481 262 217 192 0 39 chr3 64875475 64875527 -153161631 + CT-rich Low_complexity Low_complexity 2 51 0 284 313 134 21 chr3 64875598 64875985 -153161173 - L2 LINE L2 -647 2667 2237 2229 192 62 51 chr3 64876548 64877096 -153160062 - MLT2B3 LTR ERVL 0 554 1 339 274 106 88 chr3 64877353 64878063 -153159095 - L2 LINE L2 -195 3077 2369 751 250 22 35 chr3 64878362 64878590 -153158568 + LTR16C LTR ERVL 169 393 -98 197 297 33 22 chr3 64879131 64879222 -153157936 + L2 LINE L2 2920 3011 -261 346 214 22 45 chr3 64879359 64879448 -153157710 + L2 LINE L2 3225 3311 -2 530 127 0 0 chr3 64879555 64879634 -153157524 - MADE1 DNA Mariner 0 80 2 597 209 82 32 chr3 64880837 64880995 -153156163 + MIR SINE MIR 14 179 -83 607 309 83 26 chr3 64881036 64881647 -153155511 - L1M4 LINE L1 -986 5160 4515 2045 127 7 23 chr3 64881769 64882077 -153155081 - AluSx SINE Alu -9 303 1 1929 161 0 13 chr3 64882193 64882503 -153154655 - AluSx SINE Alu 0 312 7 254 239 35 26 chr3 64882599 64882712 -153154446 - L1M4 LINE L1 -2104 4042 3929 23 0 0 0 chr3 64882721 64882744 -153154414 + AT_rich Low_complexity Low_complexity 1 23 0 2072 99 0 17 chr3 64882744 64883037 -153154121 - L1MA2 LINE L1 0 6304 6017 2054 138 3 3 chr3 64883293 64883597 -153153561 + AluSx SINE Alu 1 304 -8 626 257 85 64 chr3 64883923 64884673 -153152485 - L1M4 LINE L1 -2907 3239 2474 295 277 20 62 chr3 64884772 64884967 -153152191 - L1M4 LINE L1 -3826 2320 2134 21 0 0 0 chr3 64885018 64885039 -153152119 + AT_rich Low_complexity Low_complexity 1 21 0 225 296 0 14 chr3 64885390 64885461 -153151697 + MIR SINE MIR 156 225 -37 228 380 16 0 chr3 64885848 64885969 -153151189 + L2 LINE L2 3150 3272 0 16177 189 63 23 chr3 64886274 64887156 -153150002 + L1MA7 LINE L1 1 846 -5839 327 25 0 0 chr3 64887156 64887196 -153149962 + (CA)n Simple_repeat Simple_repeat 1 40 0 16177 189 63 23 chr3 64887196 64892577 -153144581 + L1MA7 LINE L1 846 6566 -119 2306 98 3 0 chr3 64892577 64892873 -153144285 + AluSp SINE Alu 1 297 -16 16177 189 63 23 chr3 64892873 64892998 -153144160 + L1MA7 LINE L1 6566 6685 0 2978 236 41 44 chr3 64892992 64893962 -153143196 + L1M4 LINE L1 2200 3166 -2980 * 415 277 15 0 chr3 64893950 64894080 -153143078 + L1M4 LINE L1 4459 4590 -1556 * 13853 35 2 1 chr3 64894119 64896451 -153140707 - L1PA4 LINE L1 -3 6152 3819 734 184 53 63 chr3 64896969 64897159 -153139999 + MER5A DNA MER1_type 2 189 0 223 343 36 18 chr3 64899358 64899524 -153137634 - L2 LINE L2 -263 3009 2841 187 167 0 83 chr3 64900250 64900298 -153136860 - MIR SINE MIR -113 149 106 468 218 224 6 chr3 64900367 64900415 -153136743 - HAL1 LINE L1 -1009 1498 1462 198 0 0 0 chr3 64900415 64900437 -153136721 + (TC)n Simple_repeat Simple_repeat 2 23 0 468 218 224 6 chr3 64900437 64900544 -153136614 - HAL1 LINE L1 -1045 1462 1309 390 21 0 0 chr3 64900921 64900968 -153136190 + (TG)n Simple_repeat Simple_repeat 2 48 0 284 318 119 34 chr3 64900978 64901153 -153136005 + MIR3 SINE MIR 13 198 -63 439 280 48 37 chr3 64901219 64901408 -153135750 - MIR SINE MIR -70 192 2 593 211 74 51 chr3 64901668 64901843 -153135315 - MLT1K LTR MaLR -34 554 376 1813 226 28 24 chr3 64902996 64903310 -153133848 + MER63B DNA MER1_type 11 329 -733 2426 50 7 3 chr3 64903310 64903611 -153133547 - AluY SINE Alu -9 302 1 1813 226 28 24 chr3 64903611 64903720 -153133438 + MER63B DNA MER1_type 329 436 0 377 207 149 0 chr3 64904088 64904175 -153132983 + L2 LINE L2 3163 3262 -10 1181 208 55 2 chr3 64904431 64904850 -153132308 - L1MD2 LINE L1 -14 6345 5854 264 91 0 0 chr3 64905422 64905466 -153131692 + (CA)n Simple_repeat Simple_repeat 1 44 0 822 237 34 29 chr3 64906765 64906972 -153130186 + MER63A DNA MER1_type 3 210 0 292 261 130 0 chr3 64907130 64907222 -153129936 + L2 LINE L2 3136 3239 -33 219 125 0 100 chr3 64907259 64907299 -153129859 - L2 LINE L2 -17 3255 3220 260 261 151 17 chr3 64907346 64907465 -153129693 - MER5A DNA MER1_type -6 183 49 * 272 293 113 23 chr3 64907368 64907501 -153129657 + MER5A DNA MER1_type 44 188 -1 409 206 51 18 chr3 64907503 64907639 -153129519 - MIR SINE MIR -67 141 32 207 318 109 75 chr3 64907828 64908067 -153129091 - MIR SINE MIR -4 258 12 227 229 0 0 chr3 64908931 64908979 -153128179 + L1ME LINE L1 5539 5586 -535 279 194 65 16 chr3 64909016 64909078 -153128080 + MLT1I LTR MaLR 345 409 0 2248 151 182 40 chr3 64909186 64909637 -153127521 - MLT2B2 LTR ERVL 0 515 1 529 274 87 43 chr3 64910451 64910681 -153126477 - MIR SINE MIR 0 262 23 192 282 97 113 chr3 64911372 64911620 -153125538 + L2 LINE L2 2811 3054 -218 203 125 0 50 chr3 64912959 64912999 -153124159 + (TCTCTG)n Simple_repeat Simple_repeat 3 40 0 259 340 32 0 chr3 64914729 64914823 -153122335 - MER5A DNA MER1_type -3 186 90 186 195 59 148 chr3 64916164 64916333 -153120825 + L2 LINE L2 3080 3233 -80 198 0 0 0 chr3 64916360 64916382 -153120776 + (TGAA)n Simple_repeat Simple_repeat 3 24 0 205 245 105 0 chr3 64918347 64918420 -153118738 + MIR SINE MIR 45 137 -71 319 239 18 0 chr3 64918420 64918529 -153118629 + (TCCA)n Simple_repeat Simple_repeat 1 111 0 679 175 6 6 chr3 64918543 64918703 -153118455 + (TCCA)n Simple_repeat Simple_repeat 4 163 0 339 287 65 9 chr3 64918709 64918817 -153118341 - L2 LINE L2 -4 3309 3196 242 239 45 0 chr3 64918829 64918896 -153118262 + MIR SINE MIR 143 212 -50 263 256 26 0 chr3 64918897 64918975 -153118183 - MER116 DNA Mariner 0 80 1 714 290 27 35 chr3 64919671 64919930 -153117228 + MIR SINE MIR 5 261 -1 2413 121 22 22 chr3 64921010 64921374 -153115784 + THE1B LTR MaLR 1 364 0 196 407 0 0 chr3 64921608 64921662 -153115496 - L2 LINE L2 -61 3211 3158 1021 236 10 5 chr3 64921672 64921880 -153115278 - MER3 DNA MER1_type 0 209 1 492 200 11 11 chr3 64922048 64922143 -153115015 - MLT1H LTR MaLR -12 537 443 760 198 0 0 chr3 64922148 64922264 -153114894 + FLAM_C SINE Alu 3 118 -25 746 260 74 65 chr3 64922282 64922621 -153114537 - MLT1H LTR MaLR -166 383 42 703 277 94 14 chr3 64922649 64923095 -153114063 - MLT1K LTR MaLR -45 543 31 287 252 0 49 chr3 64923282 64923405 -153113753 + GA-rich Low_complexity Low_complexity 2 118 0 219 167 0 0 chr3 64924269 64924311 -153112847 + (TCCA)n Simple_repeat Simple_repeat 2 43 0 218 111 222 48 chr3 64924819 64924882 -153112276 + L2 LINE L2 3198 3271 -1 183 290 108 100 chr3 64925027 64925258 -153111900 + L2 LINE L2 3075 3307 -6 579 299 33 37 chr3 64925336 64925550 -153111608 - MIR SINE MIR -16 246 34 1118 103 0 30 chr3 64925743 64925908 -153111250 + AluSg/x SINE Alu 134 293 -19 345 273 55 9 chr3 64925997 64926107 -153111051 + MIR SINE MIR 28 142 -120 506 50 0 0 chr3 64928568 64928628 -153108530 + L1PA6 LINE L1 6089 6148 -6 34 0 0 0 chr3 64928628 64928662 -153108496 + AT_rich Low_complexity Low_complexity 1 34 0 347 292 183 32 chr3 64928800 64928942 -153108216 - L2 LINE L2 -35 3278 3159 1493 174 0 0 chr3 64928942 64929166 -153107992 - MER58A DNA MER1_type 0 224 1 347 292 183 32 chr3 64929166 64929427 -153107731 - L2 LINE L2 -154 3159 2814 729 264 31 73 chr3 64933185 64933446 -153103712 + MIR SINE MIR 13 262 0 1935 105 12 0 chr3 64934230 64934487 -153102671 + AluSx SINE Alu 38 297 -15 25 51 0 0 chr3 64934495 64934534 -153102624 + AT_rich Low_complexity Low_complexity 1 39 0 216 0 0 0 chr3 64936057 64936081 -153101077 + (CA)n Simple_repeat Simple_repeat 2 25 0 319 276 127 79 chr3 64936562 64936917 -153100241 + MLT1K LTR MaLR 189 560 -28 578 236 137 26 chr3 64937013 64937246 -153099912 - MIR SINE MIR 0 262 4 699 240 50 28 chr3 64937632 64937811 -153099347 - MER5A DNA MER1_type -6 183 1 273 239 0 45 chr3 64938605 64938693 -153098465 - L1MC4 LINE L1 -1339 6703 6620 * 2705 209 67 106 chr3 64938678 64939774 -153097384 - L1M4 LINE L1 -2417 3729 2677 1602 261 49 70 chr3 64939963 64941014 -153096144 + L2 LINE L2 2286 3313 0 189 333 96 34 chr3 64941541 64941718 -153095440 - MIR SINE MIR -55 207 20 2061 163 14 22 chr3 64941791 64942159 -153094999 + MLT1A1 LTR MaLR 1 365 0 721 292 100 17 chr3 64942492 64942783 -153094375 + L2 LINE L2 2997 3311 -2 389 235 0 52 chr3 64945371 64945486 -153091672 - MIR SINE MIR -57 205 97 267 364 52 13 chr3 64945512 64945666 -153091492 - L2 LINE L2 -9 3263 3104 180 233 96 41 chr3 64945714 64945787 -153091371 - MIR SINE MIR -26 236 160 2438 91 0 3 chr3 64946263 64946571 -153090587 - AluSc SINE Alu -2 307 1 25 0 0 0 chr3 64946574 64946599 -153090559 + AT_rich Low_complexity Low_complexity 1 25 0 1322 231 57 48 chr3 64946599 64947040 -153090118 - L1MA9 LINE L1 -39 6273 5826 2074 123 0 19 chr3 64947040 64947350 -153089808 - AluSg SINE Alu -6 304 1 6587 178 31 41 chr3 64947350 64948922 -153088236 - L1MA9 LINE L1 -679 5489 3937 335 301 158 6 chr3 64948932 64949115 -153088043 - L2 LINE L2 -616 2698 2488 273 178 41 55 chr3 64949131 64949204 -153087954 - MIR SINE MIR -118 144 73 395 277 50 0 chr3 64949422 64949523 -153087635 + L1ME1 LINE L1 6021 6126 -40 1870 243 68 20 chr3 64949537 64950138 -153087020 + L1MC4 LINE L1 6760 7389 -653 404 311 106 42 chr3 64950207 64950593 -153086565 + L1MC/D LINE L1 5313 5723 -2085 1357 201 83 40 chr3 64950606 64951102 -153086056 - MLT1E LTR MaLR -1 592 10 599 285 6 0 chr3 64952093 64952258 -153084900 + MIR SINE MIR 77 242 -20 558 295 74 29 chr3 64952311 64952555 -153084603 - MIR SINE MIR -6 256 2 2255 118 50 22 chr3 64953033 64953396 -153083762 + THE1C LTR MaLR 3 375 0 3341 180 62 21 chr3 64953774 64954452 -153082706 + L1MB7 LINE L1 5479 6184 0 1058 157 0 0 chr3 64955013 64955172 -153081986 - AluJb SINE Alu -17 295 137 4044 151 102 7 chr3 64956012 64956766 -153080392 - LTR1B LTR ERV1 0 826 1 481 298 146 0 chr3 64958192 64958350 -153078808 + MER5A DNA MER1_type 9 189 0 230 297 195 8 chr3 64958353 64958481 -153078677 - MIR SINE MIR -94 168 17 242 307 53 13 chr3 64958869 64958944 -153078214 - L2 LINE L2 -25 3288 3211 23 0 0 0 chr3 64959828 64959851 -153077307 + AT_rich Low_complexity Low_complexity 1 23 0 2815 116 3 0 chr3 64960614 64960977 -153076181 - THE1B LTR MaLR 0 364 1 571 301 165 41 chr3 64960985 64961595 -153075563 - L2 LINE L2 -219 3053 2368 403 279 58 39 chr3 64962743 64962897 -153074261 - MIR SINE MIR -75 187 31 1217 209 4 9 chr3 64963149 64963374 -153073784 + MER58A DNA MER1_type 1 224 0 1180 249 126 13 chr3 64963665 64964046 -153073112 - MLT1J2 LTR MaLR -26 424 1 274 301 21 0 chr3 64964109 64964202 -153072956 + CT-rich Low_complexity Low_complexity 4 98 0 418 276 16 31 chr3 64965091 64965218 -153071940 + L2 LINE L2 3174 3298 -15 591 314 18 9 chr3 64965885 64966105 -153071053 + MIR SINE MIR 41 262 0 3004 240 50 25 chr3 64966362 64966711 -153070447 + MER21B LTR ERV1 13 352 -511 1763 168 70 24 chr3 64966711 64967039 -153070119 - MER61A LTR ERV1 0 343 1 3004 240 50 25 chr3 64967039 64967452 -153069706 + MER21B LTR ERV1 352 794 -69 231 190 121 0 chr3 64967590 64967648 -153069510 - MER117 DNA MER1_type -48 149 85 272 242 0 16 chr3 64968286 64968348 -153068810 + CT-rich Low_complexity Low_complexity 3 63 0 967 262 73 11 chr3 64968634 64968909 -153068249 + MLT1J LTR MaLR 18 309 -202 2196 110 10 0 chr3 64969494 64969802 -153067356 + AluSq SINE Alu 1 311 -2 261 296 22 37 chr3 64970377 64970512 -153066646 - HAL1b LINE L1 -5 1343 1211 389 227 41 21 chr3 64970552 64970649 -153066509 + L2 LINE L2 3203 3301 -12 588 307 60 24 chr3 64970805 64971185 -153065973 - L1ME LINE L1 -446 5675 5286 234 237 34 8 chr3 64971191 64971309 -153065849 - L1ME LINE L1 -2904 3242 3122 2035 106 0 17 chr3 64971334 64971627 -153065531 - AluSc SINE Alu -1 308 21 302 233 0 70 chr3 64972327 64972413 -153064745 - MIR SINE MIR -124 138 59 310 328 103 20 chr3 64972453 64972648 -153064510 - HAL1b LINE L1 -893 455 245 279 0 0 0 chr3 64972698 64972729 -153064429 + (TG)n Simple_repeat Simple_repeat 2 32 0 180 0 0 0 chr3 64972728 64972748 -153064410 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 2523 110 28 25 chr3 64972813 64973176 -153063982 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr3 64973391 64973412 -153063746 + AT_rich Low_complexity Low_complexity 1 21 0 804 270 106 3 chr3 64974593 64974886 -153062272 - MER5C DNA MER1_type -1 323 1 199 262 58 68 chr3 64974892 64974995 -153062163 + L2 LINE L2 3161 3262 -10 23 0 0 0 chr3 64975857 64975880 -153061278 + AT_rich Low_complexity Low_complexity 1 23 0 1372 87 11 6 chr3 64975880 64976063 -153061095 - L1PB1 LINE L1 -1 6150 5967 224 260 0 0 chr3 64976258 64976308 -153060850 + MIR SINE MIR 201 250 -12 1314 172 0 40 chr3 64976887 64977114 -153060044 + MER20 DNA MER1_type 2 219 0 23 68 0 0 chr3 64978698 64978742 -153058416 + AT_rich Low_complexity Low_complexity 1 44 0 213 262 24 24 chr3 64979106 64979190 -153057968 + MIR SINE MIR 74 157 -105 2261 115 0 0 chr3 64980930 64981225 -153055933 + AluSc SINE Alu 5 299 -10 276 250 125 0 chr3 64981577 64981665 -153055493 + L2 LINE L2 3197 3295 -18 181 356 55 0 chr3 64982057 64982130 -153055028 + L2 LINE L2 3189 3265 -7 21 0 0 0 chr3 64982839 64982860 -153054298 + AT_rich Low_complexity Low_complexity 1 21 0 2145 148 47 33 chr3 64983002 64983361 -153053797 + THE1B LTR MaLR 1 364 0 281 284 21 21 chr3 64983392 64983487 -153053671 + L1ME LINE L1 5526 5620 -501 206 214 36 0 chr3 64983572 64983628 -153053530 + (TA)n Simple_repeat Simple_repeat 2 59 0 424 155 0 21 chr3 64985506 64985603 -153051555 + CT-rich Low_complexity Low_complexity 5 99 0 235 250 62 16 chr3 64985804 64985868 -153051290 - MER5A DNA MER1_type -96 93 27 28281 61 6 1 chr3 64985885 64989317 -153047841 - HERVL-A1 LTR ERVL -2205 3449 1 3047 105 35 7 chr3 64989320 64989355 -153047803 - MLT2A1 LTR ERVL -3 441 408 432 0 0 0 chr3 64989355 64989403 -153047755 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 3047 105 35 7 chr3 64989403 64989796 -153047362 - MLT2A1 LTR ERVL -36 408 1 194 273 10 81 chr3 64989931 64990030 -153047128 - MER5A DNA MER1_type -59 130 39 463 231 108 15 chr3 64990352 64990482 -153046676 + MIR SINE MIR 33 174 -88 1687 176 7 17 chr3 64990560 64990855 -153046303 - AluJo SINE Alu -20 292 1 1258 132 109 16 chr3 64991012 64991269 -153045889 + L1MD1 LINE L1 5954 6234 -8 301 306 45 51 chr3 64993341 64993397 -153043761 - MIR SINE MIR -40 222 167 2337 76 3 0 chr3 64993397 64993686 -153043472 + AluY SINE Alu 1 290 -21 301 306 45 51 chr3 64993686 64993786 -153043372 - MIR SINE MIR -95 167 67 439 83 214 0 chr3 64995317 64995401 -153041757 + ORSL DNA AcHobo 49 150 -125 307 317 0 10 chr3 64995404 64995505 -153041653 + CT-rich Low_complexity Low_complexity 5 104 0 279 231 32 4 chr3 64996554 64996624 -153040534 - MIR SINE MIR -56 152 82 391 249 34 112 chr3 64997864 64998069 -153039089 - MER5A DNA MER1_type 0 189 1 361 296 49 7 chr3 64998151 64998293 -153038865 - MIR SINE MIR -66 196 49 414 217 66 66 chr3 64998540 64998706 -153038452 + MER103 DNA DNA 1 166 0 476 312 54 45 chr3 64998757 64999110 -153038048 - L3 LINE CR1 -71 1506 1151 * 636 291 107 14 chr3 64999054 64999510 -153037648 + L2 LINE L2 2556 3054 -218 188 295 222 34 chr3 64999727 64999961 -153037197 - L3 LINE CR1 -409 1168 891 2104 107 0 17 chr3 65000495 65000785 -153036373 + AluSx SINE Alu 1 285 -27 265 326 22 11 chr3 65000889 65000978 -153036180 + MIR SINE MIR 12 101 -161 1152 241 0 26 chr3 65001154 65001382 -153035776 - MER58A DNA MER1_type -2 222 1 635 280 54 46 chr3 65001883 65002254 -153034904 - MLT1J LTR MaLR -137 374 1 206 272 48 13 chr3 65002279 65002410 -153034748 + MIR SINE MIR 9 210 -52 421 244 8 65 chr3 65002576 65002699 -153034459 - L2 LINE L2 -248 3024 2909 401 302 62 28 chr3 65002905 65003084 -153034074 - MIR SINE MIR -14 248 64 2379 100 3 0 chr3 65003149 65003458 -153033700 - AluSx SINE Alu -2 310 1 574 120 0 193 chr3 65003546 65003696 -153033462 + MER3 DNA MER1_type 48 168 -41 1848 181 21 0 chr3 65003698 65004074 -153033084 + MER3 DNA MER1_type 2233 2616 0 7673 107 12 2 chr3 65004245 65005515 -153031643 + L1MA2 LINE L1 5024 6304 0 1742 87 0 0 chr3 65005649 65005868 -153031290 - AluSg/x SINE Alu 0 310 92 264 200 0 0 chr3 65006034 65006089 -153031069 + (CA)n Simple_repeat Simple_repeat 2 56 0 317 331 81 27 chr3 65006089 65006237 -153030921 - MIR SINE MIR -102 160 5 1599 107 0 39 chr3 65006856 65007090 -153030068 - AluSq SINE Alu -20 293 69 193 260 20 0 chr3 65007171 65007221 -153029937 + MIR SINE MIR 113 163 -99 727 270 6 6 chr3 65007634 65007808 -153029350 - MER5A DNA MER1_type -3 186 13 185 328 94 0 chr3 65009065 65009129 -153028029 + L3 LINE CR1 1503 1572 -5 342 338 99 32 chr3 65009497 65009899 -153027259 + L2 LINE L2 2546 2974 -340 925 213 106 77 chr3 65009978 65010244 -153026914 - MSTD LTR MaLR -3 393 111 2262 112 0 0 chr3 65010244 65010548 -153026610 + AluSc SINE Alu 1 304 -5 925 213 106 77 chr3 65010548 65010657 -153026501 - MSTD LTR MaLR -285 111 7 479 283 104 0 chr3 65010907 65011080 -153026078 - MER117 DNA MER1_type -4 193 3 230 330 22 11 chr3 65012430 65012521 -153024637 + L2 LINE L2 3178 3269 -3 459 0 0 0 chr3 65012643 65012694 -153024464 + (CA)n Simple_repeat Simple_repeat 2 52 0 299 25 25 0 chr3 65012914 65012954 -153024204 + (TC)n Simple_repeat Simple_repeat 2 42 0 240 35 0 0 chr3 65014996 65015025 -153022133 + (TG)n Simple_repeat Simple_repeat 1 29 0 30 0 0 0 chr3 65016753 65016783 -153020375 + AT_rich Low_complexity Low_complexity 1 30 0 1712 55 0 0 chr3 65017102 65017303 -153019855 - AluY SINE Alu -1 310 110 288 324 59 20 chr3 65018126 65018228 -153018930 - L2 LINE L2 -5 3267 3162 225 301 14 0 chr3 65018250 65018323 -153018835 - L2 LINE L2 -261 3052 2979 22 35 0 0 chr3 65021221 65021250 -153015908 + AT_rich Low_complexity Low_complexity 1 29 0 2314 152 61 5 chr3 65021913 65022288 -153014870 + MSTD LTR MaLR 1 396 0 533 246 14 22 chr3 65023119 65023257 -153013901 + MIR SINE MIR 37 173 -89 233 326 98 0 chr3 65023232 65023364 -153013794 - MIR SINE MIR 0 262 118 * 2039 116 3 7 chr3 65023374 65023692 -153013466 - AluSx SINE Alu 0 317 1 314 357 24 0 chr3 65023693 65023819 -153013339 - MIR SINE MIR -128 134 6 553 233 62 47 chr3 65023839 65024032 -153013126 + MIR SINE MIR 33 228 -34 286 205 24 24 chr3 65024603 65024686 -153012472 + (TG)n Simple_repeat Simple_repeat 2 84 0 231 362 39 8 chr3 65025226 65025353 -153011805 + MER5A DNA MER1_type 57 187 -2 2105 233 68 30 chr3 65025985 65026457 -153010701 - MLT1E LTR MaLR -2 591 98 2287 99 0 16 chr3 65026457 65026760 -153010398 + AluSx SINE Alu 1 298 -14 2105 233 68 30 chr3 65026760 65026786 -153010372 - MLT1E LTR MaLR -495 98 74 231 256 0 58 chr3 65027300 65027311 -153009847 + LTR67 LTR ERVL 473 553 -4 277 253 13 13 chr3 65027311 65027386 -153009772 + MLT1K LTR MaLR 510 584 -4 551 334 67 33 chr3 65027458 65027787 -153009371 - L2 LINE L2 0 3272 2933 575 256 17 17 chr3 65028034 65028206 -153008952 - L1ME1 LINE L1 -19 6147 5976 272 200 100 25 chr3 65028225 65028305 -153008853 - MIR SINE MIR -63 199 114 234 240 0 0 chr3 65029119 65029169 -153007989 + L2 LINE L2 3264 3313 0 619 341 128 31 chr3 65030494 65031108 -153006050 + L2 LINE L2 2590 3272 0 658 229 56 78 chr3 65031131 65031362 -153005796 - MIR SINE MIR -24 238 13 844 236 50 5 chr3 65031805 65032004 -153005154 - MER3 DNA MER1_type -1 208 1 390 167 12 60 chr3 65032195 65032279 -153004879 - MIR SINE MIR -96 166 87 438 284 0 52 chr3 65034553 65034669 -153002489 + MIR SINE MIR 1 110 -152 193 250 58 0 chr3 65034695 65034747 -153002411 - MIR3 SINE MIR -6 202 148 408 296 113 26 chr3 65035104 65035334 -153001824 + L2 LINE L2 2805 3054 -218 745 202 27 44 chr3 65035361 65035544 -153001614 - MIR SINE MIR -35 227 48 195 327 0 36 chr3 65035705 65035760 -153001398 + L2 LINE L2 3203 3255 -17 449 83 0 14 chr3 65035813 65035885 -153001273 + (GGAA)n Simple_repeat Simple_repeat 2 72 0 274 297 31 39 chr3 65037170 65037298 -152999860 - MIR SINE MIR -20 242 116 570 258 99 28 chr3 65038449 65038631 -152998527 + MIR SINE MIR 13 207 -55 186 330 73 110 chr3 65038964 65039319 -152997839 - L2 LINE L2 -5 3267 2926 235 371 93 0 chr3 65039448 65039599 -152997559 + MIR SINE MIR 11 175 -87 233 279 144 18 chr3 65042144 65042255 -152994903 + L2 LINE L2 3180 3304 -9 2061 283 123 29 chr3 65042518 65043080 -152994078 + L2 LINE L2 2097 2605 -708 1250 188 114 37 chr3 65043080 65043351 -152993807 - AluSx SINE Alu -10 292 1 2061 283 123 29 chr3 65043351 65043900 -152993258 + L2 LINE L2 2605 3310 -3 1601 213 53 23 chr3 65044922 65045291 -152991867 - MLT1A2 LTR MaLR 0 396 1 270 241 77 128 chr3 65045665 65046018 -152991140 + L2 LINE L2 2636 2970 -344 219 322 22 56 chr3 65046279 65046369 -152990789 + L2 LINE L2 3186 3272 0 394 139 97 0 chr3 65046473 65046545 -152990613 - MLT1I LTR MaLR 0 409 331 3504 177 104 27 chr3 65046545 65046892 -152990266 + L1MD2 LINE L1 5538 5857 -502 587 86 0 129 chr3 65046892 65046956 -152990202 + L1MB4 LINE L1 6080 6124 -56 2062 129 0 7 chr3 65046956 65047250 -152989908 + AluSq SINE Alu 1 292 -21 587 86 0 129 chr3 65047250 65047301 -152989857 + L1MB4 LINE L1 6124 6180 0 3504 177 104 27 chr3 65047301 65047704 -152989454 + L1MD2 LINE L1 5857 6346 -13 308 338 81 0 chr3 65047716 65047862 -152989296 - MLT1I LTR MaLR -69 340 183 377 192 82 0 chr3 65047862 65047935 -152989223 - MER2 DNA MER2_type 0 345 267 2272 102 0 3 chr3 65047976 65048270 -152988888 + AluSx SINE Alu 1 293 -19 183 42 0 0 chr3 65048273 65048297 -152988861 + (TATAA)n Simple_repeat Simple_repeat 2 25 0 1269 150 0 0 chr3 65048298 65048491 -152988667 - MER2 DNA MER2_type -152 193 1 548 301 25 6 chr3 65048497 65048660 -152988498 - MLT1I LTR MaLR -231 178 13 242 297 109 24 chr3 65049717 65049882 -152987276 + L2 LINE L2 2871 3049 -223 180 77 0 0 chr3 65049921 65049947 -152987211 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 261 0 0 0 chr3 65050915 65050944 -152986214 + (CA)n Simple_repeat Simple_repeat 2 30 0 23 33 0 0 chr3 65051031 65051061 -152986097 + AT_rich Low_complexity Low_complexity 1 30 0 212 300 154 18 chr3 65051120 65051230 -152985928 - MER91A DNA MER1_type -1 195 71 208 239 22 0 chr3 65051413 65051459 -152985699 + MIR SINE MIR 104 150 -58 23 0 0 0 chr3 65051696 65051719 -152985439 + AT_rich Low_complexity Low_complexity 1 23 0 413 277 84 32 chr3 65051727 65051882 -152985276 - MIR SINE MIR -1 261 99 330 295 129 0 chr3 65052728 65052867 -152984291 - MIR SINE MIR -18 244 88 884 229 20 20 chr3 65056191 65056440 -152980718 - L1M4 LINE L1 -2058 4088 3840 43734 46 3 2 chr3 65056443 65062590 -152974568 - L1PA2 LINE L1 0 6155 1 3876 203 59 16 chr3 65062609 65064089 -152973069 + L1MD1 LINE L1 4598 6126 -116 735 133 7 7 chr3 65065205 65065340 -152971818 + L1P LINE L1 2974 3108 -3038 283 135 19 0 chr3 65065671 65065723 -152971435 - Charlie5 DNA MER1_type -2 2610 2558 1355 223 14 47 chr3 65065735 65066031 -152971127 + AluJb SINE Alu 3 288 -14 306 298 45 62 chr3 65066221 65066399 -152970759 + MER5B DNA MER1_type 1 175 -3 298 250 0 0 chr3 65066761 65066821 -152970337 + LTR43-int LTR ERV1 3833 3892 -906 * 2803 234 43 18 chr3 65066817 65067475 -152969683 + LTR43-int LTR ERV1 4125 4798 0 1247 217 0 0 chr3 65067475 65067701 -152969457 + LTR43 LTR ERV1 1 226 -376 1605 205 0 0 chr3 65067701 65067998 -152969160 + AluSx SINE Alu 1 297 -15 3000 144 6 4 chr3 65068099 65068577 -152968581 + L1PA8 LINE L1 5694 6172 0 460 277 39 0 chr3 65069260 65069390 -152967768 - MER93a LTR ERV1 -24 378 244 23 0 0 0 chr3 65069586 65069609 -152967549 + AT_rich Low_complexity Low_complexity 1 23 0 238 288 150 0 chr3 65069894 65069974 -152967184 - L2 LINE L2 -498 2816 2725 297 51 0 0 chr3 65069987 65070026 -152967132 + (TG)n Simple_repeat Simple_repeat 2 40 0 506 342 76 17 chr3 65071713 65071950 -152965208 + MIR SINE MIR 8 258 -4 557 100 11 0 chr3 65072313 65072403 -152964755 + (TA)n Simple_repeat Simple_repeat 1 91 0 503 205 0 0 chr3 65072711 65072789 -152964369 - AluS SINE Alu -223 89 12 240 111 0 0 chr3 65072873 65072909 -152964249 + (A)n Simple_repeat Simple_repeat 1 36 0 204 298 83 25 chr3 65073258 65073379 -152963779 - MIR SINE MIR -55 153 26 1938 145 3 13 chr3 65074484 65074794 -152962364 + AluSp SINE Alu 1 307 -6 240 35 0 0 chr3 65076123 65076152 -152961006 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1299 196 37 46 chr3 65076955 65077504 -152959654 + pTR5 LTR ERV1 742 1345 -1093 4501 140 105 21 chr3 65077519 65078278 -152958880 + LTR12 LTR ERV1 4 826 0 26959 31 3 1 chr3 65078779 65082601 -152954557 + L1PA2 LINE L1 2333 6155 0 884 229 20 20 chr3 65082604 65082853 -152954305 + L1M4 LINE L1 3840 4088 -2058 23 0 0 0 chr3 65284214 65284237 -152752921 + AT_rich Low_complexity Low_complexity 1 23 0 508 271 163 20 chr3 65284359 65284562 -152752596 - MIR SINE MIR -14 248 17 2385 67 0 3 chr3 65284890 65285189 -152751969 - AluY SINE Alu -13 298 1 204 135 0 0 chr3 65286697 65286734 -152750424 + (TA)n Simple_repeat Simple_repeat 1 37 0 2185 104 3 0 chr3 65286734 65287031 -152750127 - AluSx SINE Alu -14 298 1 643 270 42 12 chr3 65287047 65287250 -152749908 - MIR SINE MIR -9 253 37 1431 89 5 0 chr3 65288383 65288574 -152748584 + AluSq SINE Alu 102 293 -20 314 202 8 121 chr3 65288600 65288724 -152748434 - L1ME4a LINE L1 -24 6097 5988 1545 154 10 44 chr3 65290011 65290309 -152746849 - AluJo SINE Alu -24 288 1 650 233 7 0 chr3 65290412 65290558 -152746600 + L1ME3 LINE L1 6014 6160 -2 394 309 99 5 chr3 65291462 65291685 -152745473 - L2 LINE L2 -1453 1861 1618 319 293 181 64 chr3 65292173 65292487 -152744671 - L1ME4a LINE L1 -4 6117 5767 386 258 33 0 chr3 65292496 65292616 -152744542 - L1ME4a LINE L1 -420 5701 5578 865 266 35 18 chr3 65294743 65295029 -152742129 + MER46C DNA MER2_type 44 334 -4 2148 88 20 3 chr3 65295265 65295559 -152741599 - AluSx SINE Alu -13 299 1 257 310 50 0 chr3 65298623 65298723 -152738435 - MARNA DNA Mariner -236 350 246 721 256 123 51 chr3 65299102 65299421 -152737737 - Charlie8 DNA MER1_type -2141 276 1 2395 48 3 3 chr3 65299684 65299978 -152737180 - AluY SINE Alu -17 294 1 529 354 204 6 chr3 65300369 65300731 -152736427 - L3b LINE CR1 -11 1572 1139 2196 100 3 0 chr3 65301580 65301879 -152735279 + AluSq SINE Alu 1 300 -13 210 284 137 44 chr3 65302739 65302764 -152734394 + MIR SINE MIR 51 72 -190 823 148 0 15 chr3 65302764 65302899 -152734259 - FLAM_C SINE Alu 0 133 1 210 284 137 44 chr3 65302899 65303056 -152734102 + MIR SINE MIR 72 250 -12 731 258 38 0 chr3 65303475 65303661 -152733497 - MIR SINE MIR -25 237 45 306 308 170 11 chr3 65303826 65304008 -152733150 - MIR SINE MIR -43 219 9 301 219 28 28 chr3 65304162 65304238 -152732920 + AluJb SINE Alu 122 188 -114 1733 150 0 52 chr3 65304258 65304584 -152732574 + AluJo SINE Alu 4 312 0 586 291 52 12 chr3 65305264 65305436 -152731722 + MIR SINE MIR 59 237 -25 329 75 0 0 chr3 65305560 65305600 -152731558 - Alu SINE Alu -261 42 3 433 276 26 46 chr3 65305601 65305656 -152731502 - MIR SINE MIR -102 160 105 2152 102 3 0 chr3 65305656 65305959 -152731199 + AluSc SINE Alu 1 304 -5 433 276 26 46 chr3 65305959 65306055 -152731103 - MIR SINE MIR -157 105 12 2516 173 54 4 chr3 65306070 65306551 -152730607 + MLT1D LTR MaLR 1 505 0 195 114 68 45 chr3 65306568 65306612 -152730546 - L2 LINE L2 -91 3181 3137 1736 156 25 0 chr3 65307222 65307505 -152729653 + AluJo SINE Alu 6 295 -17 600 235 24 18 chr3 65307772 65307938 -152729220 - MIR SINE MIR -66 196 30 209 159 91 23 chr3 65308610 65308654 -152728504 + L2 LINE L2 3263 3309 -4 457 285 44 0 chr3 65309539 65309697 -152727461 + L1ME3A LINE L1 6006 6170 0 1906 132 21 3 chr3 65311015 65311304 -152725854 - AluSx SINE Alu -18 294 1 245 282 39 0 chr3 65311306 65311384 -152725774 + MIR3 SINE MIR 100 180 -28 304 215 7 167 chr3 65311419 65311563 -152725595 + Charlie8 DNA MER1_type 62 182 -2235 24 0 0 0 chr3 65311781 65311805 -152725353 + AT_rich Low_complexity Low_complexity 1 24 0 519 256 15 19 chr3 65312399 65312584 -152724574 - MIR SINE MIR -1 261 16 2480 49 0 7 chr3 65312705 65313009 -152724149 + AluY SINE Alu 1 302 -9 543 122 12 12 chr3 65313016 65313098 -152724060 + FRAM/FAM SINE Alu 1 73 -103 312 27 0 0 chr3 65313156 65313193 -152723965 + (CA)n Simple_repeat Simple_repeat 1 37 0 2083 117 0 7 chr3 65313922 65314222 -152722936 - AluSg1 SINE Alu -11 298 1 315 0 0 0 chr3 65314378 65314413 -152722745 + (CA)n Simple_repeat Simple_repeat 2 36 0 1591 190 7 3 chr3 65314650 65314945 -152722213 - AluJo SINE Alu -16 296 1 3981 160 18 30 chr3 65315520 65315677 -152721481 + L1M4 LINE L1 4538 4695 -1489 1934 139 0 40 chr3 65315677 65316000 -152721158 + AluJo SINE Alu 1 310 -2 3981 160 18 30 chr3 65316000 65316380 -152720778 + L1M4 LINE L1 4695 5078 -1106 2164 118 0 0 chr3 65316380 65316676 -152720482 + AluSg SINE Alu 1 296 -14 3981 160 18 30 chr3 65316676 65317310 -152719848 + L1M4 LINE L1 5078 5691 -493 1802 128 50 3 chr3 65317459 65317756 -152719402 + AluSx SINE Alu 1 311 -1 2155 105 0 3 chr3 65317764 65318069 -152719089 + AluSg SINE Alu 1 304 -6 23 33 0 0 chr3 65318231 65318261 -152718897 + AT_rich Low_complexity Low_complexity 1 30 0 318 279 74 25 chr3 65319047 65319169 -152717989 + MIR SINE MIR 92 219 -43 291 211 94 55 chr3 65319310 65319438 -152717720 + L2 LINE L2 2927 3059 -213 * 326 197 0 15 chr3 65319434 65319500 -152717658 - MIR SINE MIR -116 146 82 207 100 0 0 chr3 65319552 65319582 -152717576 + (CAAT)n Simple_repeat Simple_repeat 3 32 0 842 315 51 14 chr3 65320070 65320422 -152716736 + L2 LINE L2 2948 3312 -1 1932 151 3 0 chr3 65320527 65320832 -152716326 + AluJb SINE Alu 1 306 -6 372 348 58 7 chr3 65321545 65321700 -152715458 + L3 LINE CR1 1405 1567 -10 650 284 142 23 chr3 65321764 65322109 -152715049 - L2 LINE L2 -1 3312 2927 617 241 138 0 chr3 65323060 65323205 -152713953 - MIR SINE MIR -20 242 78 201 39 0 0 chr3 65324270 65324296 -152712862 + (CGG)n Simple_repeat Simple_repeat 3 28 0 219 244 0 24 chr3 65324307 65324389 -152712769 + G-rich Low_complexity Low_complexity 4 83 0 1607 165 7 7 chr3 65327862 65328141 -152709017 + AluJb SINE Alu 1 279 -33 1872 110 53 17 chr3 65328149 65328448 -152708710 + AluSg SINE Alu 1 310 0 210 118 0 0 chr3 65329360 65329394 -152707764 + (CA)n Simple_repeat Simple_repeat 1 34 0 1633 171 30 10 chr3 65330790 65331095 -152706063 + AluJb SINE Alu 1 311 -1 1303 148 68 97 chr3 65332309 65332620 -152704538 + AluJo SINE Alu 1 302 0 219 256 0 0 chr3 65333070 65333113 -152704045 + MIR SINE MIR 217 259 -3 1557 136 24 30 chr3 65333950 65334245 -152702913 + L1MB3 LINE L1 5891 6183 0 189 375 100 18 chr3 65334350 65334579 -152702579 - L2 LINE L2 -645 2669 2422 2049 99 0 11 chr3 65334609 65334893 -152702265 + AluSp SINE Alu 1 281 -32 2087 102 3 13 chr3 65335467 65335771 -152701387 - AluSx SINE Alu -11 301 1 1867 129 3 29 chr3 65336848 65337157 -152700001 - AluJo SINE Alu -11 301 1 233 307 20 40 chr3 65341701 65341802 -152695356 - MIR3 SINE MIR -36 172 74 273 230 0 0 chr3 65341975 65342049 -152695109 + (CA)n Simple_repeat Simple_repeat 1 74 0 21 57 0 0 chr3 65342183 65342218 -152694940 + AT_rich Low_complexity Low_complexity 1 35 0 501 248 50 61 chr3 65342594 65342792 -152694366 - MIR SINE MIR -12 250 55 417 242 62 92 chr3 65342834 65343061 -152694097 + L1ME LINE L1 5547 5766 -355 2120 92 9 38 chr3 65343433 65343748 -152693410 + AluSg SINE Alu 5 310 0 1953 109 57 0 chr3 65344425 65344708 -152692450 + AluSq SINE Alu 1 299 -14 981 209 35 0 chr3 65344939 65345140 -152692018 - MER3 DNA MER1_type -1 208 1 630 247 38 32 chr3 65345297 65345483 -152691675 - L1ME1 LINE L1 -19 6147 5961 364 276 30 37 chr3 65345491 65345625 -152691533 - MER5B DNA MER1_type -45 133 1 210 246 42 93 chr3 65345868 65345986 -152691172 + MIR SINE MIR 109 220 -42 951 199 17 6 chr3 65347009 65347185 -152689973 - MER20 DNA MER1_type 0 219 42 498 156 42 10 chr3 65347187 65347283 -152689875 + AluJb SINE Alu 211 309 -3 612 238 97 15 chr3 65348731 65348937 -152688221 + L1MC4 LINE L1 7436 7658 -384 213 189 54 14 chr3 65349188 65349262 -152687896 + (TA)n Simple_repeat Simple_repeat 2 78 0 1725 166 3 14 chr3 65349357 65349653 -152687505 + AluJo SINE Alu 1 293 -19 279 173 0 0 chr3 65349654 65349706 -152687452 + (TA)n Simple_repeat Simple_repeat 1 52 0 209 242 30 30 chr3 65350850 65350916 -152686242 + L2 LINE L2 3207 3272 0 2189 105 0 0 chr3 65350994 65351288 -152685870 - AluSx SINE Alu -18 294 1 201 284 186 0 chr3 65351312 65351414 -152685744 + L2 LINE L2 3015 3135 -178 * 503 275 119 8 chr3 65351411 65351647 -152685511 - L2 LINE L2 -2 3311 3050 1593 146 75 14 chr3 65351696 65351977 -152685181 + AluJo SINE Alu 1 298 -14 2263 80 3 0 chr3 65355286 65355575 -152681583 + AluSq SINE Alu 1 290 -23 330 279 147 43 chr3 65356160 65356331 -152680827 - MER5A DNA MER1_type 0 178 7 215 261 46 15 chr3 65358298 65358363 -152678795 - L2 LINE L2 -214 3058 2992 1063 133 0 106 chr3 65359306 65359524 -152677634 + MER20 DNA MER1_type 24 218 -1 211 258 41 82 chr3 65359594 65359691 -152677467 + MIR SINE MIR 100 192 -70 517 259 116 37 chr3 65360078 65360139 -152677019 - MIR SINE MIR 0 262 207 1832 135 11 0 chr3 65360139 65360449 -152676709 - AluSx SINE Alu 0 313 1 517 259 116 37 chr3 65360449 65360602 -152676556 - MIR SINE MIR -55 207 30 8479 145 78 34 chr3 65360602 65362226 -152674932 + pTR5 LTR ERV1 744 2438 0 2134 87 0 17 chr3 65362575 65362875 -152674283 - AluY SINE Alu -16 295 1 634 197 58 7 chr3 65362959 65363096 -152674062 + MER58A DNA MER1_type 1 144 0 461 143 25 207 chr3 65363222 65363356 -152673802 + MER69A DNA AcHobo 8 94 -2432 1579 152 0 29 chr3 65363356 65363632 -152673526 - AluJo SINE Alu -44 268 1 461 143 25 207 chr3 65363632 65363700 -152673458 + MER69A DNA AcHobo 94 173 -4 1828 119 0 25 chr3 65364176 65364462 -152672696 + AluSg1 SINE Alu 25 303 -6 288 53 0 0 chr3 65364885 65364923 -152672235 + (TC)n Simple_repeat Simple_repeat 2 39 0 297 0 0 0 chr3 65364923 65364956 -152672202 + (CA)n Simple_repeat Simple_repeat 1 33 0 2065 120 3 0 chr3 65365887 65366188 -152670970 + AluSx SINE Alu 1 302 -10 1027 237 27 27 chr3 65366227 65366484 -152670674 - MIR SINE MIR 0 262 6 717 258 78 9 chr3 65366630 65366847 -152670311 - MIR SINE MIR -30 232 1 295 257 24 12 chr3 65366999 65367093 -152670065 + MIR SINE MIR 59 146 -62 1853 115 4 0 chr3 65367804 65368065 -152669093 - AluSq SINE Alu -30 283 22 877 261 81 41 chr3 65368252 65368738 -152668420 + MLT1K LTR MaLR 3 565 -23 207 232 130 58 chr3 65368802 65368871 -152668287 + L2 LINE L2 3240 3313 0 625 277 65 55 chr3 65369040 65369362 -152667796 + L1M4 LINE L1 3800 4130 -2016 2135 89 14 3 chr3 65369362 65369654 -152667504 + AluSc SINE Alu 1 295 -14 625 277 65 55 chr3 65369654 65369804 -152667354 + L1M4 LINE L1 4130 4277 -1869 1623 167 0 11 chr3 65369875 65370145 -152667013 + AluJo SINE Alu 1 267 -45 935 327 81 10 chr3 65370726 65371136 -152666022 + L2 LINE L2 2875 3313 0 365 371 30 20 chr3 65371259 65371456 -152665702 + L2 LINE L2 2590 2788 -526 185 290 75 21 chr3 65371996 65372089 -152665069 - L3 LINE CR1 -110 1467 1370 2524 43 0 0 chr3 65372372 65372673 -152664485 - AluY SINE Alu -10 301 1 284 339 17 0 chr3 65372971 65373089 -152664069 + L1MC4 LINE L1 7546 7665 -377 255 208 19 0 chr3 65373257 65373310 -152663848 - MIR3 SINE MIR -48 160 107 461 221 87 0 chr3 65373380 65373484 -152663674 - MER63 DNA MER1_type -298 764 26 303 247 74 0 chr3 65373660 65373741 -152663417 + L2 LINE L2 3173 3259 -13 1805 163 0 3 chr3 65374004 65374298 -152662860 + AluJb SINE Alu 1 293 -19 381 231 124 25 chr3 65374747 65374868 -152662290 + L2 LINE L2 3177 3309 -4 378 325 9 0 chr3 65375035 65375149 -152662009 - MIR SINE MIR -60 202 88 2056 98 7 17 chr3 65375459 65375754 -152661404 + AluSx SINE Alu 1 292 -20 236 274 41 86 chr3 65375765 65375829 -152661329 + MIR SINE MIR 52 117 -145 6777 12 0 0 chr3 65375829 65376608 -152660550 + L1PA2 LINE L1 5394 6172 0 236 274 41 86 chr3 65376608 65376702 -152660456 + MIR SINE MIR 117 210 -52 324 0 0 0 chr3 65376866 65376902 -152660256 + (CA)n Simple_repeat Simple_repeat 2 37 0 336 333 28 0 chr3 65376913 65377021 -152660137 + MIR SINE MIR 30 140 -68 2194 88 7 0 chr3 65377034 65377329 -152659829 + AluSp SINE Alu 1 297 -16 301 272 11 0 chr3 65377462 65377554 -152659604 - MER103 DNA DNA -64 102 10 310 289 25 75 chr3 65378997 65379156 -152658002 - L2 LINE L2 -1 3312 3162 314 240 146 0 chr3 65379291 65379387 -152657771 - MIR SINE MIR -14 248 139 260 128 0 0 chr3 65379604 65379643 -152657515 + AluS SINE Alu 32 70 -233 253 272 88 18 chr3 65379741 65379855 -152657303 + MIR3 SINE MIR 84 205 -3 323 248 62 48 chr3 65380446 65380591 -152656567 + MIR SINE MIR 107 253 -9 459 326 47 71 chr3 65381148 65381684 -152655474 + L1MC4a LINE L1 5561 6083 -1725 214 143 0 0 chr3 65381726 65381744 -152655414 + (TTAAA)n Simple_repeat Simple_repeat 2 19 -24 2145 115 3 3 chr3 65381744 65382048 -152655110 + AluSq SINE Alu 1 304 -9 214 143 0 0 chr3 65382048 65382071 -152655087 + (TTAAA)n Simple_repeat Simple_repeat 18 43 0 922 181 0 6 chr3 65382112 65382272 -152654886 - FAM SINE Alu -19 166 8 1870 154 7 13 chr3 65382635 65382941 -152654217 - AluJb SINE Alu -7 305 2 24 0 0 0 chr3 65383025 65383049 -152654109 + AT_rich Low_complexity Low_complexity 1 24 0 1994 135 3 0 chr3 65383327 65383630 -152653528 - AluSx SINE Alu -8 304 1 426 224 41 10 chr3 65383634 65383732 -152653426 + MLT1J2 LTR MaLR 66 166 -284 212 294 0 0 chr3 65384112 65384163 -152652995 + L2 LINE L2 3263 3313 0 215 146 0 24 chr3 65384363 65384404 -152652754 + (CAGAGA)n Simple_repeat Simple_repeat 6 45 0 803 32 0 0 chr3 65385574 65385888 -152651270 + AluY SINE Alu 1 314 0 692 285 26 5 chr3 65385982 65386175 -152650983 - MIR SINE MIR -56 206 10 189 107 0 0 chr3 65386207 65386235 -152650923 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 1870 155 7 7 chr3 65386427 65386718 -152650440 - AluJo SINE Alu -13 299 9 216 325 72 0 chr3 65386849 65386932 -152650226 - MIR SINE MIR -112 150 62 1585 238 148 42 chr3 65387259 65387474 -152649684 + L1ME3A LINE L1 5471 5662 -508 1441 200 92 86 chr3 65387474 65387973 -152649185 - MLT1D LTR MaLR -3 502 1 1585 238 148 42 chr3 65387973 65388173 -152648985 + L1ME3A LINE L1 5662 5839 -331 2170 104 0 4 chr3 65388173 65388452 -152648706 + AluSg SINE Alu 1 278 -32 261 0 0 0 chr3 65388452 65388481 -152648677 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 1585 238 148 42 chr3 65388481 65388690 -152648468 + L1ME3A LINE L1 5838 6161 -9 791 277 41 18 chr3 65389190 65389441 -152647717 - MIR SINE MIR 0 262 4 750 244 58 34 chr3 65390414 65390619 -152646539 - MER63A DNA MER1_type 0 210 1 456 51 0 0 chr3 65390619 65390678 -152646480 + (TA)n Simple_repeat Simple_repeat 1 59 0 2378 81 0 3 chr3 65390678 65390973 -152646185 - AluY SINE Alu -17 294 1 2285 92 0 7 chr3 65391100 65391393 -152645765 - AluSg SINE Alu -19 291 1 350 304 46 51 chr3 65391541 65391758 -152645400 - L2 LINE L2 -189 3083 2868 2277 115 3 0 chr3 65392963 65393267 -152643891 + AluSq SINE Alu 1 305 -8 286 299 185 0 chr3 65393528 65393685 -152643473 - MIR SINE MIR -17 245 60 301 275 81 20 chr3 65394171 65394320 -152642838 - MIR SINE MIR -77 185 28 2160 121 6 13 chr3 65395044 65395358 -152641800 + AluSx SINE Alu 1 312 0 577 337 38 22 chr3 65395393 65395577 -152641581 + MIR SINE MIR 37 223 -39 207 309 155 0 chr3 65396936 65397059 -152640099 + MER5A DNA MER1_type 1 151 -38 2129 143 3 0 chr3 65397063 65397370 -152639788 + AluJo SINE Alu 1 308 -4 229 250 159 11 chr3 65397559 65397647 -152639511 + MER5A DNA MER1_type 31 131 -58 273 214 278 8 chr3 65397845 65397971 -152639187 - MIR SINE MIR -90 172 13 209 176 0 0 chr3 65398451 65398485 -152638673 + GA-rich Low_complexity Low_complexity 1 34 0 937 265 54 25 chr3 65398946 65399227 -152637931 - MER46C DNA MER2_type 0 338 46 1965 96 4 0 chr3 65399227 65399478 -152637680 + AluSp SINE Alu 47 298 -15 937 265 54 25 chr3 65399478 65399513 -152637645 - MER46C DNA MER2_type -292 46 13 242 247 12 74 chr3 65399533 65399614 -152637544 - MIR SINE MIR 0 262 187 2092 117 3 3 chr3 65399663 65399953 -152637205 + AluSx SINE Alu 5 294 -18 414 264 24 24 chr3 65399977 65400102 -152637056 - MIR SINE MIR -7 255 131 187 111 0 0 chr3 65400249 65400276 -152636882 - MIR SINE MIR -207 55 29 2342 98 0 0 chr3 65400280 65400575 -152636583 - AluSx SINE Alu -17 295 1 573 232 29 48 chr3 65401499 65401706 -152635452 - L1ME3 LINE L1 -22 6140 5938 253 250 66 37 chr3 65401970 65402106 -152635052 - L1ME4a LINE L1 -27 6094 5955 2584 76 0 3 chr3 65402285 65402599 -152634559 - AluSp SINE Alu 0 313 1 240 293 36 0 chr3 65402713 65402804 -152634354 - MIR3 SINE MIR -18 190 94 26 0 0 0 chr3 65402897 65402923 -152634235 + AT_rich Low_complexity Low_complexity 1 26 0 2475 97 0 0 chr3 65403128 65403428 -152633730 - AluSx SINE Alu -12 300 1 183 208 13 130 chr3 65403768 65403845 -152633313 + L2 LINE L2 2476 2543 -771 355 318 54 0 chr3 65404809 65404938 -152632220 - MIR SINE MIR -57 205 70 2216 117 0 40 chr3 65404938 65405085 -152632073 + AluSx SINE Alu 1 152 -160 2566 68 0 0 chr3 65405085 65405396 -152631762 + AluY SINE Alu 1 311 0 2216 117 0 40 chr3 65405396 65405572 -152631586 + AluSx SINE Alu 152 311 -1 316 284 73 34 chr3 65405744 65405948 -152631210 + MER102b DNA MER1_type 79 290 -51 250 222 153 28 chr3 65407914 65407986 -152629172 - L2 LINE L2 -29 3284 3204 2247 121 21 27 chr3 65408382 65408720 -152628438 + MER1B DNA MER1_type 2 337 0 189 0 0 0 chr3 65408755 65408776 -152628382 + (T)n Simple_repeat Simple_repeat 1 21 0 2261 99 0 3 chr3 65409776 65410079 -152627079 + AluSq SINE Alu 1 302 0 2368 193 16 39 chr3 65410265 65410779 -152626379 + MLT1D LTR MaLR 4 505 0 375 314 146 31 chr3 65411016 65411139 -152626019 + MIR SINE MIR 7 114 -148 2299 117 0 0 chr3 65411139 65411438 -152625720 + AluSq SINE Alu 1 299 -14 375 314 146 31 chr3 65411438 65411540 -152625618 + MIR SINE MIR 114 258 -4 2259 103 3 0 chr3 65412848 65413140 -152624018 - AluSq SINE Alu -20 293 1 864 104 0 16 chr3 65413197 65413379 -152623779 + (TA)n Simple_repeat Simple_repeat 2 180 0 255 93 0 0 chr3 65413386 65413429 -152623729 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 2170 122 0 7 chr3 65413431 65413726 -152623432 - AluSx SINE Alu -19 293 1 1222 47 7 7 chr3 65415539 65415688 -152621470 + AluSp/q SINE Alu 156 304 -9 1740 163 139 16 chr3 65416383 65416764 -152620394 + MSTA LTR MaLR 1 428 0 468 0 0 0 chr3 65417224 65417276 -152619882 + (GA)n Simple_repeat Simple_repeat 1 52 0 2157 136 70 12 chr3 65417973 65418318 -152618840 + MLT1A1 LTR MaLR 1 365 0 1385 107 65 0 chr3 65418387 65418472 -152618686 - MER30 DNA MER1_type 0 230 152 216 0 0 0 chr3 65418472 65418496 -152618662 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1385 107 65 0 chr3 65418496 65418626 -152618532 - MER30 DNA MER1_type -78 152 1 294 237 42 51 chr3 65419506 65419624 -152617534 + MIR3 SINE MIR 58 174 -34 2043 112 26 30 chr3 65420649 65420952 -152616206 - AluSx SINE Alu -8 304 3 21 36 0 0 chr3 65421099 65421127 -152616031 + AT_rich Low_complexity Low_complexity 1 28 0 1552 198 37 0 chr3 65421142 65421415 -152615743 + AluJo SINE Alu 14 296 -16 923 254 10 5 chr3 65421564 65421773 -152615385 + MIR SINE MIR 52 261 -1 297 0 0 0 chr3 65421915 65421948 -152615210 + (CA)n Simple_repeat Simple_repeat 1 33 0 254 81 0 0 chr3 65421950 65421987 -152615171 + MER69 DNA AcHobo 2490 2526 0 309 51 0 0 chr3 65422102 65422141 -152615017 + (TTA)n Simple_repeat Simple_repeat 2 40 0 2236 92 3 0 chr3 65422155 65422437 -152614721 - AluSx SINE Alu -29 283 1 619 144 19 0 chr3 65422540 65422644 -152614514 - FRAM SINE Alu -9 167 62 553 224 37 60 chr3 65423384 65423518 -152613640 - L2 LINE L2 -4 3268 3138 236 338 12 0 chr3 65423692 65423772 -152613386 - L2 LINE L2 -564 2750 2670 1978 148 17 7 chr3 65424266 65424564 -152612594 + AluJo SINE Alu 1 301 -11 485 252 73 52 chr3 65424870 65425163 -152611995 - L1ME4a LINE L1 -7 6114 5829 1906 156 27 0 chr3 65425163 65425458 -152611700 - AluSx SINE Alu -9 303 1 2104 158 0 3 chr3 65425466 65425777 -152611381 - AluJb SINE Alu -2 310 1 485 252 73 52 chr3 65425777 65425858 -152611300 - L1ME4a LINE L1 -298 5823 5623 2358 88 0 3 chr3 65425995 65426291 -152610867 - AluSg SINE Alu -15 295 1 1755 155 54 3 chr3 65426847 65427144 -152610014 + AluJb SINE Alu 1 312 0 602 259 65 22 chr3 65427194 65427379 -152609779 - MIR SINE MIR -10 252 60 257 297 245 26 chr3 65427564 65427833 -152609325 - L2 LINE L2 -338 2976 2649 2338 114 0 0 chr3 65428038 65428345 -152608813 - AluSx SINE Alu -5 307 1 293 331 55 28 chr3 65428345 65428490 -152608668 - MIR SINE MIR -107 155 7 521 234 15 0 chr3 65429546 65429683 -152607475 - AluJo SINE Alu -170 142 4 2174 85 11 7 chr3 65429747 65430069 -152607089 - AluY SINE Alu 0 323 1 23 0 0 0 chr3 65430105 65430128 -152607030 + AT_rich Low_complexity Low_complexity 1 23 0 2152 142 51 53 chr3 65430209 65430624 -152606534 - MLT2D LTR ERVL 0 414 1 2274 105 20 3 chr3 65430676 65430980 -152606178 + AluSx SINE Alu 3 311 -1 642 183 130 0 chr3 65431183 65431298 -152605860 - FLAM_A SINE Alu -3 130 1 485 210 73 0 chr3 65431606 65431730 -152605428 - L1MB7 LINE L1 -16 6168 6036 2148 117 3 23 chr3 65431753 65432060 -152605098 - AluSx SINE Alu -11 301 1 1209 266 17 44 chr3 65432094 65432279 -152604879 + L2 LINE L2 1645 1833 -1481 2544 124 12 86 chr3 65432279 65432625 -152604533 - L1MB2 LINE L1 -7 6164 5794 1803 155 54 0 chr3 65432625 65432921 -152604237 + AluJb SINE Alu 1 312 0 2544 124 12 86 chr3 65432921 65432943 -152604215 - L1MB2 LINE L1 -377 5794 5772 1735 184 13 7 chr3 65432943 65433247 -152603911 - AluJb SINE Alu -5 307 2 2544 124 12 86 chr3 65433247 65433378 -152603780 - L1MB2 LINE L1 -399 5772 5701 1209 266 17 44 chr3 65433378 65433602 -152603556 + L2 LINE L2 1833 2043 -1271 1321 243 180 17 chr3 65433604 65434379 -152602779 + L2 LINE L2 2395 3304 -9 305 125 18 0 chr3 65434479 65434535 -152602623 + (TG)n Simple_repeat Simple_repeat 2 58 0 300 315 47 8 chr3 65434569 65434696 -152602462 - L1MB7 LINE L1 -1976 5832 5701 414 229 143 57 chr3 65435364 65435504 -152601654 + MIR SINE MIR 107 258 -4 2717 148 56 63 chr3 65435536 65435769 -152601389 + L1MB4 LINE L1 5597 5830 -350 762 230 0 0 chr3 65435769 65435908 -152601250 + FRAM SINE Alu 1 137 -39 838 219 0 0 chr3 65435774 65435925 -152601233 + AluJo/FRAM SINE Alu 140 290 -12 2717 148 56 63 chr3 65435908 65436274 -152600884 + L1MB4 LINE L1 5830 6180 0 1111 178 87 4 chr3 65436915 65437156 -152600002 - AluJb SINE Alu -15 297 37 2141 119 3 0 chr3 65437348 65437659 -152599499 + AluSp SINE Alu 1 312 -1 228 268 98 24 chr3 65437835 65437917 -152599241 + MIR SINE MIR 86 173 -89 854 189 27 16 chr3 65438479 65438664 -152598494 + MIR SINE MIR 8 194 -68 2176 82 40 13 chr3 65438893 65439196 -152597962 - AluY SINE Alu 0 311 1 2088 90 7 0 chr3 65441440 65441719 -152595439 + AluSg SINE Alu 1 281 -29 212 0 36 0 chr3 65441724 65441752 -152595406 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 788 164 178 146 chr3 65441940 65442069 -152595089 + AluJo SINE Alu 3 126 -176 2150 120 0 0 chr3 65442069 65442377 -152594781 + AluSx SINE Alu 1 308 -4 788 164 178 146 chr3 65442377 65442528 -152594630 + AluJo SINE Alu 126 292 -10 2135 106 17 0 chr3 65442533 65442835 -152594323 + AluSg SINE Alu 1 307 -3 1861 98 14 28 chr3 65442986 65443271 -152593887 - AluSc SINE Alu -27 282 2 1153 242 42 14 chr3 65443278 65443473 -152593685 - L1M4 LINE L1 -823 5323 5112 2115 128 0 0 chr3 65443473 65443785 -152593373 - AluSx SINE Alu 0 312 1 1153 242 42 14 chr3 65443785 65443945 -152593213 - L1M4 LINE L1 -1034 5112 4958 214 314 48 19 chr3 65444314 65444419 -152592739 - L2 LINE L2 -34 3279 3172 2176 99 7 3 chr3 65444429 65444732 -152592426 + AluSg SINE Alu 1 304 -6 199 332 111 21 chr3 65444752 65444942 -152592216 - L2 LINE L2 -252 3061 2855 302 123 14 96 chr3 65445013 65445086 -152592072 - FLAM SINE Alu 0 133 67 2029 127 10 0 chr3 65445426 65445734 -152591424 - AluSx SINE Alu -1 311 1 287 322 0 0 chr3 65445841 65445928 -152591230 + L2 LINE L2 3155 3241 -31 347 266 208 17 chr3 65445959 65446132 -152591026 - L1MC5 LINE L1 -36 7925 7720 5811 24 5 1 chr3 65446808 65447481 -152589677 + L1PA4 LINE L1 5481 6155 0 1036 90 136 0 chr3 65447610 65447765 -152589393 + MER30 DNA MER1_type 1 176 -54 257 362 43 0 chr3 65447858 65447952 -152589206 + MIR SINE MIR 8 105 -157 273 287 40 20 chr3 65448350 65448451 -152588707 - MIR SINE MIR -74 188 86 2003 138 0 0 chr3 65448451 65448762 -152588396 + AluJo SINE Alu 1 311 -1 2073 123 0 3 chr3 65448991 65449300 -152587858 + AluSx SINE Alu 1 308 -4 324 83 0 0 chr3 65449702 65449750 -152587408 + (T)n Simple_repeat Simple_repeat 1 48 0 380 196 15 65 chr3 65449868 65449993 -152587165 - LTR37B LTR ERV1 -33 435 270 241 121 0 121 chr3 65449988 65450046 -152587112 - LTR37B LTR ERV1 -76 392 342 * 405 0 0 0 chr3 65450057 65450102 -152587056 + (CA)n Simple_repeat Simple_repeat 2 46 0 614 196 126 123 chr3 65450160 65450212 -152586946 - LTR37B LTR ERV1 -162 306 256 2051 106 0 0 chr3 65450212 65450515 -152586643 + AluSx SINE Alu 1 303 0 614 196 126 123 chr3 65450515 65450762 -152586396 - LTR37B LTR ERV1 -212 256 5 341 240 13 0 chr3 65450772 65450847 -152586311 + L2 LINE L2 3195 3270 -2 377 294 76 55 chr3 65451240 65451280 -152585878 + Charlie8 DNA MER1_type 35 73 -2344 2284 84 0 0 chr3 65451280 65451576 -152585582 + AluSg SINE Alu 1 296 -14 377 294 76 55 chr3 65451576 65451773 -152585385 + Charlie8 DNA MER1_type 73 277 -2140 1248 246 24 3 chr3 65453388 65453677 -152583481 - AluSq SINE Alu -8 295 1 239 330 0 33 chr3 65453677 65453758 -152583400 + MIR3 SINE MIR 102 181 -27 28 0 0 0 chr3 65453781 65453809 -152583349 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr3 65454157 65454181 -152582977 + AT_rich Low_complexity Low_complexity 1 24 0 382 272 89 25 chr3 65454983 65455141 -152582017 + L1ME3 LINE L1 5695 5862 -300 1640 179 0 0 chr3 65455173 65455446 -152581712 + AluJo SINE Alu 1 273 -39 207 0 0 0 chr3 65506465 65506488 -152530670 + (A)n Simple_repeat Simple_repeat 1 23 0 1746 142 41 7 chr3 65506586 65506881 -152530277 - AluY SINE Alu -6 305 1 1698 157 20 30 chr3 65507090 65507390 -152529768 - AluJo SINE Alu -15 297 1 371 208 117 0 chr3 65507436 65507513 -152529645 - AluJ/FRAM SINE Alu -2 300 215 2246 103 0 0 chr3 65507546 65507838 -152529320 - AluSg SINE Alu -18 292 1 872 208 12 6 chr3 65508324 65508492 -152528666 - FAM SINE Alu -2 173 5 2362 102 0 0 chr3 65508496 65508809 -152528349 - AluSq SINE Alu 0 313 1 250 302 28 28 chr3 65508971 65509077 -152528081 + MIR SINE MIR 21 126 -82 273 259 180 21 chr3 65509111 65509350 -152527808 - L1ME4a LINE L1 -8 6113 5837 568 174 41 0 chr3 65509568 65509666 -152527492 - FRAM SINE Alu -13 163 62 185 0 0 39 chr3 65509681 65509707 -152527451 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 891 104 0 0 chr3 65509710 65509825 -152527333 - AluSp/q SINE Alu -30 283 169 1144 95 0 7 chr3 65509853 65510001 -152527157 + AluSg SINE Alu 1 147 -163 276 210 32 16 chr3 65510160 65510222 -152526936 + MER113 DNA MER1_type? 456 518 -3 459 0 0 0 chr3 65510534 65510585 -152526573 + (TG)n Simple_repeat Simple_repeat 2 52 0 1374 175 97 8 chr3 65510967 65511235 -152525923 - AluJo SINE Alu 0 312 21 699 221 44 0 chr3 65511651 65511809 -152525349 - L1MC4a LINE L1 -1196 6612 6448 1884 328 60 11 chr3 65511835 65512694 -152524464 + MERVL LTR ERVL 4426 5327 -158 1260 207 39 94 chr3 65513058 65513516 -152523642 + LTR41 LTR ERVL 3 435 -338 4776 127 4 13 chr3 65513670 65514008 -152523150 - L1PA13 LINE L1 -1 6162 5823 2236 118 7 0 chr3 65514008 65514314 -152522844 - AluSq SINE Alu -5 308 1 4776 127 4 13 chr3 65514314 65514692 -152522466 - L1PA13 LINE L1 -340 5823 5452 768 115 0 16 chr3 65514692 65514808 -152522350 - L1PA13 LINE L1 -197 5966 5853 3613 146 18 32 chr3 65514812 65514941 -152522217 - L1PA13 LINE L1 -718 5450 5321 2524 64 0 0 chr3 65514941 65515238 -152521920 - AluY SINE Alu -14 297 1 3613 146 18 32 chr3 65515238 65515836 -152521322 - L1PA13 LINE L1 -847 5321 4728 1663 148 0 8 chr3 65516000 65516256 -152520902 - AluSx SINE Alu -11 301 48 2283 94 14 3 chr3 65516542 65516839 -152520319 + AluSx SINE Alu 1 300 -12 237 169 0 117 chr3 65517550 65517627 -152519531 - L2 LINE L2 -1273 2041 1974 25 51 0 0 chr3 65517782 65517821 -152519337 + AT_rich Low_complexity Low_complexity 1 39 0 2636 163 140 16 chr3 65518808 65519380 -152517778 - L1MC4 LINE L1 -955 7087 6445 2320 122 9 0 chr3 65520012 65520349 -152516809 - L1PA13 LINE L1 -1 6162 5823 1860 96 8 0 chr3 65520349 65520600 -152516558 - AluSq SINE Alu -5 308 56 1534 148 13 8 chr3 65520773 65521010 -152516148 + AluJo SINE Alu 62 299 -13 2428 205 76 44 chr3 65521453 65521904 -152515254 + HsTC2a DNA Tc2 10 494 -1406 2447 74 0 6 chr3 65521904 65522216 -152514942 + AluY SINE Alu 1 310 -1 2428 205 76 44 chr3 65522216 65522472 -152514686 + HsTC2a DNA Tc2 494 740 -4 230 266 105 73 chr3 65523243 65523367 -152513791 + MIR3 SINE MIR 5 132 -76 537 293 96 36 chr3 65523647 65524085 -152513073 - L2 LINE L2 0 3272 2797 296 234 13 65 chr3 65524168 65524245 -152512913 + L2 LINE L2 3200 3272 0 1585 164 75 3 chr3 65524428 65524746 -152512412 - L1MC3 LINE L1 0 7785 7445 2231 123 0 9 chr3 65524747 65525063 -152512095 - AluSq SINE Alu 0 313 1 2899 58 44 60 chr3 65525066 65525099 -152512059 - L1PB1 LINE L1 -325 5826 5794 405 0 0 0 chr3 65525099 65525144 -152512014 + (TA)n Simple_repeat Simple_repeat 2 46 0 2899 58 44 60 chr3 65525144 65525541 -152511617 - L1PB1 LINE L1 -357 5794 5403 822 149 0 0 chr3 65525576 65525690 -152511468 - AluJb SINE Alu -197 115 2 361 211 157 30 chr3 65525692 65525858 -152511300 - HAL1 LINE L1 -1426 1081 895 430 244 43 17 chr3 65526227 65526342 -152510816 - L2 LINE L2 -5 3267 3150 255 311 66 16 chr3 65526406 65526528 -152510630 - MIR SINE MIR -65 143 16 2182 132 0 0 chr3 65527048 65527351 -152509807 + AluSx SINE Alu 1 303 -9 759 199 22 66 chr3 65528010 65528219 -152508939 - L1MD3 LINE L1 -10 7985 7785 1473 205 3 17 chr3 65528219 65528516 -152508642 - AluJo SINE Alu -19 293 1 759 199 22 66 chr3 65528516 65528532 -152508626 - L1MD3 LINE L1 -210 7785 7770 * 2239 170 36 7 chr3 65528527 65528945 -152508213 - L1MC3 LINE L1 0 7785 7356 2306 97 3 0 chr3 65529054 65529353 -152507805 + AluSx SINE Alu 1 300 -12 1125 171 10 5 chr3 65529454 65529653 -152507505 + MER3 DNA MER1_type 10 209 0 508 269 48 43 chr3 65529492 65529700 -152507458 - MER3 DNA MER1_type 0 209 1 * 1846 113 40 7 chr3 65529739 65530013 -152507145 + AluSx SINE Alu 1 283 -29 219 69 0 0 chr3 65530047 65530076 -152507082 + (A)n Simple_repeat Simple_repeat 1 29 0 255 282 111 34 chr3 65530290 65530407 -152506751 - MIR SINE MIR -120 142 17 316 202 107 36 chr3 65530959 65531043 -152506115 + L2 LINE L2 3224 3313 0 2418 77 7 0 chr3 65531312 65531611 -152505547 + AluSp SINE Alu 1 301 -12 1802 176 10 10 chr3 65531621 65531927 -152505231 + AluJo SINE Alu 1 306 -6 2188 108 0 7 chr3 65531927 65532221 -152504937 + AluSg SINE Alu 1 293 -17 353 308 75 17 chr3 65532330 65532450 -152504708 + L2 LINE L2 3142 3268 -4 2390 91 0 0 chr3 65532653 65532949 -152504209 + AluSc SINE Alu 1 296 -13 1664 52 5 0 chr3 65533171 65533363 -152503795 - L1PA6 LINE L1 -4 6150 5958 180 0 0 0 chr3 65533427 65533447 -152503711 + (CA)n Simple_repeat Simple_repeat 2 21 0 312 261 57 24 chr3 65533457 65533618 -152503540 - L1MC/D LINE L1 -332 5789 5669 2166 108 14 0 chr3 65534019 65534314 -152502844 + AluSg SINE Alu 1 299 -11 194 369 117 10 chr3 65534326 65534429 -152502729 - L2 LINE L2 -12 3260 3147 500 201 123 53 chr3 65534431 65534675 -152502483 + L1MC5 LINE L1 7646 7906 -55 797 261 113 0 chr3 65534821 65535043 -152502115 + MIR SINE MIR 16 262 0 233 330 48 0 chr3 65535187 65535290 -152501868 - L2 LINE L2 -831 2483 2376 2209 99 7 0 chr3 65535861 65536144 -152501014 + AluSx SINE Alu 1 313 0 220 36 0 0 chr3 65536144 65536172 -152500986 + (CAAA)n Simple_repeat Simple_repeat 2 172 0 278 167 0 0 chr3 65536280 65536334 -152500824 - L1MC4 LINE L1 -2 8040 7987 2291 195 74 27 chr3 65536336 65536701 -152500457 - L1MC4 LINE L1 -144 7898 7497 1664 151 27 27 chr3 65536701 65537000 -152500158 + AluJo SINE Alu 1 299 -13 2291 195 74 27 chr3 65537000 65537189 -152499969 - L1MC4 LINE L1 -545 7497 7318 1918 143 11 0 chr3 65537308 65537594 -152499564 - AluJb SINE Alu -23 289 1 24 32 0 0 chr3 65537956 65537987 -152499171 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr3 65538015 65538040 -152499118 + AT_rich Low_complexity Low_complexity 1 25 0 518 276 93 49 chr3 65538062 65538287 -152498871 - MIR SINE MIR -14 248 14 2046 113 30 13 chr3 65539017 65539319 -152497839 - AluSx SINE Alu -5 307 1 25 0 0 0 chr3 65539319 65539344 -152497814 + AT_rich Low_complexity Low_complexity 1 25 0 845 152 56 0 chr3 65539344 65539469 -152497689 - AluJo SINE Alu -176 136 5 21 0 0 0 chr3 65539478 65539499 -152497659 + AT_rich Low_complexity Low_complexity 1 21 0 405 311 25 8 chr3 65539595 65539714 -152497444 + MER5A DNA MER1_type 69 189 0 2234 79 30 10 chr3 65540375 65540678 -152496480 - AluSc SINE Alu 0 309 1 2120 110 10 0 chr3 65540904 65541213 -152495945 - AluSx SINE Alu 0 312 1 23 0 0 0 chr3 65541597 65541620 -152495538 + AT_rich Low_complexity Low_complexity 1 23 0 357 284 125 67 chr3 65542692 65543083 -152494075 - L1M2 LINE L1 -5884 965 552 1698 163 10 24 chr3 65544295 65544584 -152492574 + AluJb SINE Alu 1 285 -27 21 36 0 0 chr3 65544624 65544652 -152492506 + AT_rich Low_complexity Low_complexity 1 28 0 2465 72 0 3 chr3 65544794 65545098 -152492060 - AluY SINE Alu -8 303 1 2179 118 0 14 chr3 65545158 65545455 -152491703 - AluY SINE Alu -18 293 1 341 224 204 0 chr3 65546207 65546305 -152490853 + L2 LINE L2 3155 3272 0 2114 99 4 0 chr3 65546545 65546818 -152490340 - AluSp SINE Alu -13 300 27 2224 108 3 3 chr3 65546831 65547128 -152490030 - AluSx SINE Alu -15 297 1 253 330 191 9 chr3 65548217 65548332 -152488826 - MIR3 SINE MIR -41 167 32 3958 163 63 71 chr3 65549280 65549420 -152487738 - L1MB5 LINE L1 -6 6168 6028 2479 103 42 31 chr3 65549420 65549780 -152487378 - THE1B LTR MaLR 0 364 1 3958 163 63 71 chr3 65549780 65550793 -152486365 - L1MB5 LINE L1 -146 6028 5032 2056 150 67 55 chr3 65550927 65551573 -152485585 - L1M4 LINE L1 -497 5677 5032 280 332 136 47 chr3 65551945 65552430 -152484728 - L2 LINE L2 -1 3271 2728 790 164 19 101 chr3 65552906 65553114 -152484044 + LTR41 LTR ERVL 577 767 -6 268 207 27 104 chr3 65553119 65553212 -152483946 - L1MC4 LINE L1 -1415 6393 6294 2415 84 0 3 chr3 65553212 65553511 -152483647 - AluSc SINE Alu -11 298 1 268 207 27 104 chr3 65553511 65553788 -152483370 - L1MC4 LINE L1 -1514 6294 6106 1755 143 11 0 chr3 65553788 65554053 -152483105 + AluSx SINE Alu 16 283 -29 418 73 36 36 chr3 65554053 65554163 -152482995 + (TA)n Simple_repeat Simple_repeat 1 110 0 514 242 21 63 chr3 65554163 65554353 -152482805 - L1MC4a LINE L1 -1699 6109 5928 838 173 0 0 chr3 65554713 65554846 -152482312 - MLT1A1 LTR MaLR 0 365 233 4996 132 45 69 chr3 65554846 65555871 -152481287 - MER52C LTR ERV1 0 1278 25 1414 171 13 4 chr3 65555878 65556112 -152481046 - MLT1A1 LTR MaLR -129 236 1 336 316 39 68 chr3 65556146 65556380 -152480778 + L1ME4a LINE L1 5724 5950 -212 302 230 130 20 chr3 65557787 65557887 -152479271 + L1ME4a LINE L1 6008 6118 -3 492 304 104 27 chr3 65558035 65558249 -152478909 + L2 LINE L2 2564 2760 -553 2226 96 4 0 chr3 65558249 65558572 -152478586 + AluSp SINE Alu 1 324 0 492 304 104 27 chr3 65558572 65558764 -152478394 + L2 LINE L2 2760 3017 -296 210 309 0 15 chr3 65558763 65558831 -152478327 + MER5A DNA MER1_type 123 189 0 * 25 0 0 0 chr3 65559059 65559084 -152478074 + AT_rich Low_complexity Low_complexity 1 25 0 1905 147 0 11 chr3 65559086 65559371 -152477787 - AluJb SINE Alu -30 282 1 937 75 0 0 chr3 65560127 65560247 -152476911 + AluSg/x SINE Alu 183 302 -7 745 221 78 96 chr3 65560254 65560538 -152476620 - L1MC4a LINE L1 -1426 6382 6104 1709 176 0 7 chr3 65560538 65560865 -152476293 + AluJb SINE Alu 1 325 0 745 221 78 96 chr3 65560865 65560977 -152476181 - L1MC4a LINE L1 -1704 6104 5992 2193 175 123 18 chr3 65561077 65561533 -152475625 + LTR22 LTR ERVK 6 509 0 246 113 0 38 chr3 65561533 65561580 -152475578 + AluSc SINE Alu 255 299 0 1246 174 17 47 chr3 65562406 65562642 -152474516 - MER46A DNA MER2_type -6 230 2 288 296 0 0 chr3 65562879 65562960 -152474198 + L3 LINE CR1 891 971 -606 554 296 127 9 chr3 65563001 65563221 -152473937 - MIR SINE MIR -15 247 2 216 254 70 28 chr3 65563251 65563322 -152473836 + MIR SINE MIR 32 105 -157 270 242 183 25 chr3 65563989 65564109 -152473049 + MIR SINE MIR 118 256 -6 207 114 0 0 chr3 65565226 65565261 -152471897 + (CAAAAA)n Simple_repeat Simple_repeat 1 35 0 342 67 0 0 chr3 65565486 65565531 -152471627 + (TG)n Simple_repeat Simple_repeat 2 46 0 1670 157 4 11 chr3 65565547 65565815 -152471343 - AluJo SINE Alu -35 277 12 428 241 62 0 chr3 65565826 65565938 -152471220 - MER103 DNA DNA -26 140 22 196 269 77 0 chr3 65566104 65566156 -152471002 - MIR SINE MIR -119 143 88 2267 97 0 3 chr3 65566339 65566638 -152470520 - AluSx SINE Alu -14 298 1 2678 240 122 31 chr3 65566649 65567674 -152469484 - HAL1 LINE L1 0 2507 1390 22 35 0 0 chr3 65567687 65567716 -152469442 + AT_rich Low_complexity Low_complexity 1 29 0 2426 216 198 23 chr3 65568101 65569026 -152468132 - HAL1 LINE L1 -1122 1385 299 799 197 46 131 chr3 65570210 65570381 -152466777 - L1ME LINE L1 -645 5521 5337 2020 112 0 11 chr3 65570381 65570658 -152466500 - AluSx SINE Alu -11 301 28 799 197 46 131 chr3 65570658 65570759 -152466399 - L1ME LINE L1 -829 5337 5229 1629 197 3 0 chr3 65570759 65571043 -152466115 - AluJo SINE Alu -27 285 1 799 197 46 131 chr3 65571043 65571211 -152465947 - L1ME LINE L1 -937 5229 5116 * 4490 245 70 20 chr3 65571209 65572815 -152464343 - L1M4 LINE L1 -1395 4751 3034 1937 154 7 10 chr3 65572817 65572989 -152464169 - AluJo SINE Alu -7 305 133 2166 125 0 0 chr3 65572989 65573286 -152463872 - AluSx SINE Alu -15 297 1 1937 154 7 10 chr3 65573286 65573419 -152463739 - AluJo SINE Alu -179 133 1 204 125 0 0 chr3 65573709 65573741 -152463417 + (GGAA)n Simple_repeat Simple_repeat 1 32 0 503 223 36 36 chr3 65573802 65573941 -152463217 + MIR SINE MIR 18 156 -106 2111 130 0 0 chr3 65573950 65574243 -152462915 + AluSx SINE Alu 1 293 -19 216 317 96 19 chr3 65574274 65574378 -152462780 + MIR SINE MIR 123 234 -28 794 161 0 22 chr3 65574383 65574520 -152462638 - MLT1A1 LTR MaLR -3 362 229 27 54 0 40 chr3 65575441 65575515 -152461643 + AT_rich Low_complexity Low_complexity 1 71 0 22 35 0 0 chr3 65575964 65575993 -152461165 + AT_rich Low_complexity Low_complexity 1 29 0 216 0 0 0 chr3 65576973 65576997 -152460161 + (A)n Simple_repeat Simple_repeat 1 24 0 2423 34 41 7 chr3 65577093 65577388 -152459770 - AluY SINE Alu -6 305 1 21 0 0 0 chr3 65578089 65578110 -152459048 + AT_rich Low_complexity Low_complexity 1 21 0 2144 124 3 3 chr3 65579440 65579746 -152457412 + AluSq SINE Alu 1 306 -7 23 0 0 0 chr3 65579746 65579769 -152457389 + AT_rich Low_complexity Low_complexity 1 23 0 239 261 91 75 chr3 65581610 65581809 -152455349 - L2 LINE L2 -77 3236 3035 566 0 29 0 chr3 65581967 65582036 -152455122 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 2442 49 0 3 chr3 65582036 65582324 -152454834 - AluY SINE Alu -24 287 1 2070 106 7 14 chr3 65582434 65582745 -152454413 - AluSx SINE Alu 0 309 1 592 310 182 9 chr3 65582745 65583311 -152453847 - L2 LINE L2 -10 3303 2619 399 236 11 11 chr3 65583306 65583395 -152453763 - L2 LINE L2 -2 3270 3182 * 2120 116 3 0 chr3 65583658 65583942 -152453216 - AluSx SINE Alu -10 302 18 910 89 0 0 chr3 65583945 65584057 -152453101 - AluSq/x SINE Alu -181 131 20 752 199 0 28 chr3 65584278 65584419 -152452739 - FLAM_A SINE Alu 0 142 6 452 234 89 25 chr3 65584481 65584639 -152452519 - L2 LINE L2 -780 2534 2367 242 325 0 0 chr3 65584673 65584756 -152452402 - L2 LINE L2 -1054 2260 2178 930 166 18 18 chr3 65584758 65584921 -152452237 + AluJb SINE Alu 137 299 -13 269 320 131 6 chr3 65584927 65585102 -152452056 - L2 LINE L2 -1139 2175 1979 * 1285 266 74 30 chr3 65585093 65585232 -152451926 + L2 LINE L2 2609 2740 -573 1657 177 21 3 chr3 65585232 65585520 -152451638 + AluJo SINE Alu 1 293 -19 1285 266 74 30 chr3 65585520 65586014 -152451144 + L2 LINE L2 2740 3284 -29 2085 123 0 0 chr3 65586014 65586299 -152450859 + AluSx SINE Alu 1 285 -27 240 0 0 31 chr3 65586299 65586331 -152450827 + (CAAAA)n Simple_repeat Simple_repeat 2 100 0 1285 266 74 30 chr3 65586331 65586363 -152450795 + L2 LINE L2 3284 3313 0 371 298 77 24 chr3 65586353 65586521 -152450637 - L2 LINE L2 -1317 1997 1821 * 353 219 105 9 chr3 65586530 65586644 -152450514 + L1MEd LINE L1 13 137 -5982 495 244 50 31 chr3 65586830 65586990 -152450168 + L1MEd LINE L1 592 754 -5365 774 249 95 57 chr3 65587008 65587065 -152450093 + MLT1J LTR MaLR 6 59 -452 2085 93 21 7 chr3 65587065 65587344 -152449814 - AluSx SINE Alu -18 294 12 774 249 95 57 chr3 65587344 65587736 -152449422 + MLT1J LTR MaLR 59 511 0 350 233 108 78 chr3 65587966 65588198 -152448960 - L1MC/D LINE L1 -2280 5528 5290 583 224 68 1 chr3 65588200 65588377 -152448781 + L1ME2 LINE L1 5976 6162 -4 607 212 161 0 chr3 65589446 65589583 -152447575 - FAM SINE Alu -12 163 5 266 250 78 78 chr3 65590858 65590986 -152446172 - L2 LINE L2 -1 3312 3185 2167 118 0 0 chr3 65591159 65591456 -152445702 - AluSx SINE Alu -15 297 1 399 336 170 21 chr3 65591607 65592166 -152444992 - L2 LINE L2 -446 2868 2227 257 211 0 35 chr3 65592238 65592295 -152444863 + L2 LINE L2 3258 3312 -1 1948 122 14 14 chr3 65592549 65592843 -152444315 - AluSx SINE Alu -16 296 3 1563 184 46 0 chr3 65593725 65594008 -152443150 + AluJo SINE Alu 4 299 -13 2291 99 0 0 chr3 65595588 65595881 -152441277 + AluSx SINE Alu 1 293 -19 704 58 0 0 chr3 65596627 65596713 -152440445 + AluSg/x SINE Alu 213 298 -11 24 0 0 0 chr3 65596939 65596963 -152440195 + AT_rich Low_complexity Low_complexity 1 24 0 255 125 25 0 chr3 65597659 65597699 -152439459 - L3 LINE CR1 -7 1570 1530 22 0 7 0 chr3 65598592 65598646 -152438512 + AT_rich Low_complexity Low_complexity 1 22 0 2189 120 0 0 chr3 65599032 65599332 -152437826 - AluSx SINE Alu -12 300 1 245 276 67 60 chr3 65599404 65599538 -152437620 - L2 LINE L2 0 3313 3179 2151 123 0 0 chr3 65599801 65600094 -152437064 - AluSx SINE Alu -19 293 1 212 301 233 10 chr3 65600122 65600225 -152436933 - MER5A DNA MER1_type -11 178 53 24 32 0 0 chr3 65600967 65600998 -152436160 + AT_rich Low_complexity Low_complexity 1 31 0 746 194 30 0 chr3 65601249 65601383 -152435775 + AluJb SINE Alu 154 291 -21 271 192 96 0 chr3 65601413 65601486 -152435672 - L1MB2 LINE L1 -33 6138 6059 251 321 49 0 chr3 65601715 65601796 -152435362 - L2 LINE L2 0 3313 3229 1865 155 0 7 chr3 65603332 65603629 -152433529 - AluJo SINE Alu -17 295 1 210 37 0 0 chr3 65604622 65604649 -152432509 + (TG)n Simple_repeat Simple_repeat 2 28 0 822 104 9 0 chr3 65604650 65604765 -152432393 - FLAM_C SINE Alu -17 116 1 21 0 0 0 chr3 65605264 65605285 -152431873 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr3 65605685 65605714 -152431444 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr3 65606002 65606037 -152431121 + AT_rich Low_complexity Low_complexity 1 35 0 4928 149 37 11 chr3 65606066 65606676 -152430482 - L1MA4A LINE L1 -24 6279 5686 2416 87 0 0 chr3 65606676 65606985 -152430173 - AluY SINE Alu 0 311 3 4928 149 37 11 chr3 65606985 65607534 -152429624 - L1MA4A LINE L1 -617 5686 5031 2195 117 23 0 chr3 65607555 65607855 -152429303 - AluSx SINE Alu -5 307 1 3284 105 30 9 chr3 65607965 65607983 -152429175 - L1MA2 LINE L1 -6 6298 6282 312 27 0 0 chr3 65607983 65608020 -152429138 + (TG)n Simple_repeat Simple_repeat 1 37 0 2190 104 3 3 chr3 65608022 65608320 -152428838 - AluSx SINE Alu -14 298 1 3284 105 30 9 chr3 65608320 65608824 -152428334 - L1MA2 LINE L1 -22 6282 5762 6722 203 43 40 chr3 65608831 65610309 -152426849 - L1MA2 LINE L1 -443 5861 4371 2195 129 0 3 chr3 65610309 65610619 -152426539 - AluSx SINE Alu -3 309 1 6722 203 43 40 chr3 65610619 65611874 -152425284 - L1MA2 LINE L1 -1933 4371 3121 2142 173 195 4 chr3 65611860 65612368 -152424790 - L1MA4A LINE L1 -1092 5054 4450 * 2181 112 0 3 chr3 65612979 65613274 -152423884 + AluSx SINE Alu 1 294 -18 300 159 186 44 chr3 65613707 65613820 -152423338 - MARNA DNA Mariner -29 557 429 30 69 0 0 chr3 65613837 65613895 -152423263 + AT_rich Low_complexity Low_complexity 1 58 0 2438 56 0 0 chr3 65617631 65617919 -152419239 - AluY SINE Alu -23 288 1 30 45 0 0 chr3 65619090 65619134 -152418024 + AT_rich Low_complexity Low_complexity 1 44 0 1493 125 5 22 chr3 65619421 65619645 -152417513 + AluSx SINE Alu 1 220 -92 2337 93 0 10 chr3 65620098 65620411 -152416747 - AluSx SINE Alu -2 310 1 496 79 0 0 chr3 65621078 65621154 -152416004 - AluY SINE Alu -2 309 234 1438 85 0 16 chr3 65621154 65621342 -152415816 - AluY SINE Alu -126 185 1 1730 186 71 69 chr3 65621471 65621975 -152415183 - MLT1D LTR MaLR 0 505 1 21 36 0 0 chr3 65622252 65622280 -152414878 + AT_rich Low_complexity Low_complexity 1 28 0 1023 199 89 21 chr3 65622311 65622547 -152414611 + MIR SINE MIR 6 257 -5 22 56 0 0 chr3 65623851 65623887 -152413271 + AT_rich Low_complexity Low_complexity 1 36 0 21 82 0 0 chr3 65624846 65624895 -152412263 + AT_rich Low_complexity Low_complexity 1 49 0 2356 97 0 6 chr3 65625572 65625883 -152411275 - AluSg SINE Alu -1 309 1 2110 132 0 0 chr3 65628769 65629064 -152408094 - AluSx SINE Alu -17 295 1 936 270 106 37 chr3 65629538 65629993 -152407165 + MLT1K LTR MaLR 80 565 -23 193 263 68 76 chr3 65630254 65630372 -152406786 + L2 LINE L2 3197 3313 0 805 251 32 36 chr3 65630678 65630897 -152406261 - MIR SINE MIR -5 257 40 1471 196 127 6 chr3 65630948 65631280 -152405878 + MLT1A2 LTR MaLR 1 372 -2 2235 140 18 0 chr3 65631333 65631675 -152405483 + MER83C LTR ERV1 26 373 0 266 259 42 54 chr3 65631902 65632068 -152405090 + L1MC/D LINE L1 5315 5478 -2330 233 289 0 0 chr3 65632066 65632118 -152405040 - L1ME LINE L1 -585 5536 5485 * 1131 188 109 8 chr3 65632436 65632675 -152404483 + AluJo SINE Alu 21 283 -29 369 0 0 0 chr3 65633077 65633118 -152404040 + (CA)n Simple_repeat Simple_repeat 2 42 0 270 227 30 15 chr3 65633430 65633496 -152403662 - MER113 DNA MER1_type? -3 518 452 324 232 74 0 chr3 65633619 65633714 -152403444 - MER113 DNA MER1_type? -419 102 1 450 0 0 0 chr3 65633921 65633971 -152403187 + (TA)n Simple_repeat Simple_repeat 1 50 0 2461 96 0 0 chr3 65633981 65634293 -152402865 - AluSx SINE Alu 0 312 1 2224 97 0 3 chr3 65634606 65634905 -152402253 + AluY SINE Alu 3 300 -11 1643 185 30 0 chr3 65634946 65635249 -152401909 - AluJb SINE Alu 0 312 1 3230 67 2 30 chr3 65635348 65635809 -152401349 + LTR7 LTR ERV1 1 448 -2 14381 108 6 18 chr3 65635811 65638644 -152398514 + HERVH LTR ERV1 1 2995 -4718 5281 104 19 2 chr3 65638625 65639463 -152397695 + HERVH LTR ERV1 3142 3993 -3720 * 2859 134 0 2 chr3 65639465 65640077 -152397081 + HERVH LTR ERV1 4488 5146 -2567 1295 117 33 0 chr3 65640081 65640294 -152396864 + HERVH LTR ERV1 5600 5819 -1894 2327 92 52 0 chr3 65640294 65640662 -152396496 + HERVH LTR ERV1 7324 7710 -3 532 266 38 11 chr3 65640957 65641141 -152396017 - MIR SINE MIR -4 258 70 605 225 66 112 chr3 65641451 65642030 -152395128 + MER34B LTR ERV1 4 542 0 2260 80 10 3 chr3 65642634 65642923 -152394235 - AluSx SINE Alu -21 291 1 968 175 53 19 chr3 65643079 65643285 -152393873 + MER20 DNA MER1_type 1 213 -6 404 294 32 8 chr3 65644663 65644789 -152392369 + LTR67 LTR ERVL 97 225 -332 1384 134 0 102 chr3 65644822 65644917 -152392241 + AluJo SINE Alu 63 166 -146 1722 171 7 7 chr3 65644917 65645203 -152391955 + AluSx SINE Alu 1 286 -26 1384 134 0 102 chr3 65645203 65645361 -152391797 + AluJo SINE Alu 166 290 -22 530 276 51 10 chr3 65645440 65645636 -152391522 + LTR67 LTR ERVL 330 533 -24 517 241 47 26 chr3 65645698 65645889 -152391269 + MLT1L LTR MaLR 410 604 -11 187 182 68 0 chr3 65646218 65646262 -152390896 + MIR3 SINE MIR 121 167 -41 312 271 79 17 chr3 65647144 65647321 -152389837 - LTR16C LTR ERVL -5 486 299 198 264 0 38 chr3 65647988 65648041 -152389117 + L2 LINE L2 3020 3070 -202 * 396 293 2 90 chr3 65648027 65648116 -152389042 + MIR SINE MIR 12 76 -186 1850 109 62 86 chr3 65648116 65648500 -152388658 + THE1C LTR MaLR 1 375 0 396 293 2 90 chr3 65648500 65648612 -152388546 + MIR SINE MIR 76 196 -66 7388 165 48 24 chr3 65648756 65650084 -152387074 - L1MA8 LINE L1 -120 6171 4876 1229 139 98 0 chr3 65650084 65650299 -152386859 + MER46A DNA MER2_type 1 236 0 7388 165 48 24 chr3 65650299 65651116 -152386042 - L1MA8 LINE L1 -1415 4876 3952 1971 140 13 29 chr3 65651116 65651430 -152385728 - AluSx SINE Alu -3 309 1 7388 165 48 24 chr3 65651430 65651601 -152385557 - L1MA8 LINE L1 -2339 3952 3787 374 286 11 11 chr3 65651624 65651715 -152385443 + MER5A DNA MER1_type 65 155 -34 537 245 0 70 chr3 65651749 65651892 -152385266 + L2 LINE L2 3181 3313 0 1012 185 39 0 chr3 65652188 65652366 -152384792 + MER5A DNA MER1_type 1 185 -4 347 196 0 93 chr3 65653464 65653561 -152383597 + L2 LINE L2 3190 3277 -36 285 295 38 48 chr3 65653653 65653758 -152383400 - L2 LINE L2 0 3272 3169 2292 102 0 0 chr3 65654193 65654496 -152382662 + AluSx SINE Alu 1 303 -9 273 231 46 28 chr3 65655355 65655463 -152381695 + L1MC/D LINE L1 5315 5424 -2384 365 290 89 47 chr3 65655504 65655844 -152381314 + MLT1J LTR MaLR 71 425 -21 330 156 0 0 chr3 65655860 65655924 -152381234 + L1MC/D LINE L1 5400 5463 -2345 963 125 11 28 chr3 65655953 65656129 -152381029 + MLT2D LTR ERVL 33 205 -209 42404 36 3 1 chr3 65656129 65662272 -152374886 + L1PA3 LINE L1 4 6155 0 814 188 91 5 chr3 65662275 65662437 -152374721 + MLT2D LTR ERVL 188 371 -43 207 0 0 0 chr3 65662437 65662460 -152374698 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 814 188 91 5 chr3 65662460 65662494 -152374664 + MLT2D LTR ERVL 371 401 -13 512 250 67 17 chr3 65662559 65662739 -152374419 - L2 LINE L2 0 3313 3125 1694 166 124 54 chr3 65663267 65663695 -152373463 + MER31B LTR ERV1 1 458 -8 746 322 70 21 chr3 65663895 65664548 -152372610 + L1MEc LINE L1 38 722 -5674 426 198 25 0 chr3 65664553 65664634 -152372524 - MER58 DNA MER1_type 0 2420 133 927 137 0 0 chr3 65664634 65664773 -152372385 - AluSg SINE Alu -1 309 171 571 114 0 0 chr3 65664773 65664852 -152372306 - AluSg SINE Alu -229 81 3 2150 130 3 0 chr3 65664875 65665175 -152371983 - AluSx SINE Alu -11 301 1 398 194 65 21 chr3 65665184 65665277 -152371881 - MER58 DNA MER1_type -118 97 1 995 286 83 32 chr3 65665283 65665909 -152371249 + L1MEc LINE L1 725 1382 -5014 658 289 30 19 chr3 65666545 65666808 -152370350 + L1ME3 LINE L1 248 513 -6094 1665 139 112 0 chr3 65667004 65667291 -152369867 - MER7A DNA MER2_type -29 317 1 398 272 83 43 chr3 65667368 65667531 -152369627 + L1ME3 LINE L1 717 872 -5735 824 220 0 19 chr3 65667531 65667690 -152369468 - FRAM SINE Alu -9 157 2 398 272 83 43 chr3 65667690 65667994 -152369164 + L1ME3 LINE L1 872 1255 -5352 422 226 113 40 chr3 65668086 65668263 -152368895 + L1ME3 LINE L1 1881 2070 -4537 * 812 186 22 11 chr3 65668261 65668444 -152368714 + L1MCa LINE L1 42 226 -6200 1392 180 15 209 chr3 65668450 65668770 -152368388 + L1MCa LINE L1 2412 2792 -3634 702 117 0 9 chr3 65668770 65668881 -152368277 + FLAM_C SINE Alu 1 110 -33 1392 180 15 209 chr3 65668881 65668923 -152368235 + L1MCa LINE L1 2792 2840 -3586 2257 101 3 0 chr3 65668923 65669211 -152367947 + AluSp SINE Alu 1 289 -24 189 107 0 0 chr3 65669211 65669239 -152367919 + (TA)n Simple_repeat Simple_repeat 2 29 0 1392 180 15 209 chr3 65669239 65669545 -152367613 + L1MCa LINE L1 2839 3036 -3390 8237 97 36 59 chr3 65669545 65670942 -152366216 + SVA Other Other 20 1385 -1 1392 180 15 209 chr3 65670942 65670961 -152366197 + L1MCa LINE L1 3036 3057 -3369 1134 104 99 9 chr3 65670944 65671156 -152366002 + L1MA5 LINE L1 5936 6166 -134 * 11145 146 40 38 chr3 65671184 65671348 -152365810 + L1MCa LINE L1 3046 3208 -3369 1761 188 0 3 chr3 65671348 65671630 -152365528 + AluJb SINE Alu 16 296 -16 11145 146 40 38 chr3 65671630 65673904 -152363254 + L1MCa LINE L1 3208 5476 -1101 2137 96 19 59 chr3 65673904 65674227 -152362931 + AluSg SINE Alu 1 310 0 11145 146 40 38 chr3 65674227 65674342 -152362816 + L1MCa LINE L1 5476 5589 -988 1724 159 21 17 chr3 65674342 65674632 -152362526 + AluJb SINE Alu 7 297 -15 11145 146 40 38 chr3 65674632 65674729 -152362429 + L1MCa LINE L1 5589 5684 -893 3632 199 21 81 chr3 65674729 65675759 -152361399 + LTR5 LTR ERVK 1 969 0 11145 146 40 38 chr3 65675759 65676441 -152360717 + L1MCa LINE L1 5684 6399 -178 1072 165 102 17 chr3 65676442 65676678 -152360480 - Tigger2 DNA MER2_type -12 2706 2451 669 146 9 0 chr3 65676743 65676853 -152360305 - Tigger2 DNA MER2_type -1974 744 634 377 240 0 0 chr3 65676853 65676949 -152360209 + L1ME3 LINE L1 3971 4066 -2360 3459 139 34 5 chr3 65676949 65677561 -152359597 - Tigger2 DNA MER2_type -2088 630 1 1014 136 0 6 chr3 65677561 65677737 -152359421 + L1MA5A LINE L1 6117 6291 -6 1691 190 48 41 chr3 65677749 65678432 -152358726 + L1MC1 LINE L1 2057 2733 -3874 1376 199 43 99 chr3 65678442 65678979 -152358179 + L1MC1 LINE L1 3701 4207 -2219 2038 126 0 19 chr3 65678979 65679289 -152357869 + AluSx SINE Alu 1 304 -8 3888 150 83 10 chr3 65679289 65680209 -152356949 + L1MC1 LINE L1 5612 6613 0 646 229 8 60 chr3 65680227 65680493 -152356665 + L1ME3 LINE L1 4736 4987 -1439 * 5711 98 20 29 chr3 65680490 65681237 -152355921 + L1PB1 LINE L1 5388 6123 -308 1982 132 7 7 chr3 65681237 65681533 -152355625 - AluSx SINE Alu -14 298 3 5711 98 20 29 chr3 65681533 65681840 -152355318 + L1PB1 LINE L1 6123 6431 0 1387 264 128 33 chr3 65681889 65682534 -152354624 + L1ME3 LINE L1 5071 5654 -788 2214 94 7 0 chr3 65682534 65682858 -152354300 + AluSg SINE Alu 1 310 0 1387 264 128 33 chr3 65682858 65683450 -152353708 + L1ME3 LINE L1 5654 6425 -17 21 0 0 0 chr3 65683589 65683610 -152353548 + AT_rich Low_complexity Low_complexity 1 21 0 788 182 71 35 chr3 65683888 65684086 -152353072 + L1MD2 LINE L1 6143 6347 -12 2130 129 10 0 chr3 65684352 65684646 -152352512 + AluSx SINE Alu 1 297 -15 240 179 15 75 chr3 65684791 65684841 -152352317 + L1MD1 LINE L1 5536 5583 -659 1479 143 0 9 chr3 65684841 65685057 -152352101 - AluJb SINE Alu -13 299 86 240 179 15 75 chr3 65685057 65685073 -152352085 + L1MD1 LINE L1 5583 5598 -644 5615 102 45 1 chr3 65685086 65686054 -152351104 + L1PA15 LINE L1 5152 6160 -5 210 71 0 0 chr3 65686086 65686114 -152351044 + (A)n Simple_repeat Simple_repeat 1 28 0 3490 180 14 14 chr3 65686114 65686764 -152350394 + L1MD1 LINE L1 5593 6242 0 909 172 68 40 chr3 65686779 65687029 -152350129 + L1MC4a LINE L1 6061 6317 -1491 1069 154 64 0 chr3 65687053 65687241 -152349917 - L1M4 LINE L1 -498 5686 5487 818 267 5 32 chr3 65687431 65687652 -152349506 - MIR SINE MIR -21 241 27 1927 148 13 3 chr3 65687708 65688056 -152349102 + AluJb SINE Alu 1 312 0 2221 104 7 10 chr3 65688282 65688591 -152348567 - AluSx SINE Alu -4 308 1 284 284 0 39 chr3 65689051 65689153 -152348005 + GA-rich Low_complexity Low_complexity 2 99 0 225 221 118 0 chr3 65689354 65689422 -152347736 + L2 LINE L2 3232 3307 -6 1036 134 19 0 chr3 65690340 65690497 -152346661 - AluSg/x SINE Alu -18 292 133 303 263 0 0 chr3 65690673 65690833 -152346325 + C-rich Low_complexity Low_complexity 1 160 0 204 158 0 0 chr3 65690905 65690943 -152346215 + C-rich Low_complexity Low_complexity 2 39 0 681 120 10 0 chr3 65691079 65691179 -152345979 + AluSp/q SINE Alu 189 289 -24 310 258 0 32 chr3 65691206 65691299 -152345859 - L1MC4 LINE L1 -1339 6703 6614 7023 58 0 2 chr3 65691698 65692907 -152344251 - L1PA6 LINE L1 -6 6148 4947 1309 86 0 0 chr3 65692907 65693082 -152344076 + L1PA6 LINE L1 4789 4963 -1183 24 0 0 0 chr3 65693154 65693178 -152343980 + AT_rich Low_complexity Low_complexity 1 24 0 6655 72 16 0 chr3 65694381 65695453 -152341705 + L1PA10 LINE L1 5071 6159 -9 499 212 53 37 chr3 65695458 65695647 -152341511 - L1ME4a LINE L1 -52 6069 5878 183 129 0 0 chr3 65695689 65695720 -152341438 + (TA)n Simple_repeat Simple_repeat 2 32 0 3782 108 18 0 chr3 65695795 65696339 -152340819 + MER41A LTR ERV1 1 554 0 1740 145 32 21 chr3 65696879 65697162 -152339996 + AluSx SINE Alu 1 286 -26 527 138 0 0 chr3 65697473 65697553 -152339605 + AluJ/FLAM SINE Alu 8 87 -225 23 0 0 0 chr3 65698143 65698166 -152338992 + AT_rich Low_complexity Low_complexity 1 23 0 245 252 83 130 chr3 65698179 65698409 -152338749 - MIR SINE MIR -43 219 1 2068 97 7 45 chr3 65698756 65699064 -152338094 + AluSq SINE Alu 2 297 -16 202 179 36 0 chr3 65699064 65699120 -152338038 + (TA)n Simple_repeat Simple_repeat 1 58 0 204 130 43 0 chr3 65699134 65699203 -152337955 + (TA)n Simple_repeat Simple_repeat 1 72 0 587 243 248 14 chr3 65700147 65700357 -152336801 - MIR SINE MIR -3 259 1 204 150 25 0 chr3 65700522 65700562 -152336596 + (CATA)n Simple_repeat Simple_repeat 2 42 0 585 317 75 46 chr3 65700688 65700994 -152336164 + L1ME2 LINE L1 387 701 -5504 506 103 0 0 chr3 65701267 65701345 -152335813 + L1MB7 LINE L1 6098 6175 -9 595 140 158 18 chr3 65701375 65701489 -152335669 + FRAM SINE Alu 20 149 -27 312 120 0 0 chr3 65701489 65701539 -152335619 + (CA)n Simple_repeat Simple_repeat 2 51 0 1614 229 57 96 chr3 65701548 65701827 -152335331 + L1ME2 LINE L1 1418 1706 -4690 1438 178 4 0 chr3 65701827 65702096 -152335062 + L1MA4 LINE L1 6020 6289 -11 1614 229 57 96 chr3 65702096 65702731 -152334427 + L1ME2 LINE L1 1706 2296 -4100 257 271 83 0 chr3 65702796 65702892 -152334266 + L1ME2 LINE L1 4951 5054 -1161 2145 102 3 36 chr3 65703143 65703446 -152333712 - AluSg SINE Alu -17 293 1 876 249 89 27 chr3 65703963 65704188 -152332970 + MIR SINE MIR 8 246 -16 1480 191 54 76 chr3 65704480 65704926 -152332232 + L1ME2 LINE L1 5788 6223 -10 24 0 0 0 chr3 65705417 65705441 -152331717 + AT_rich Low_complexity Low_complexity 1 24 0 1028 162 0 66 chr3 65709444 65709641 -152327517 - AluJo SINE Alu -128 184 1 25 31 0 0 chr3 65709645 65709677 -152327481 + AT_rich Low_complexity Low_complexity 1 32 0 1566 214 37 33 chr3 65709967 65710396 -152326762 + MER63B DNA MER1_type 6 436 0 650 313 94 46 chr3 65710463 65710939 -152326219 - MLT1K LTR MaLR -88 500 2 2351 93 3 0 chr3 65711644 65711954 -152325204 - AluY SINE Alu 0 311 1 353 254 31 31 chr3 65712113 65712243 -152324915 + MIR SINE MIR 124 253 -9 817 162 71 19 chr3 65712691 65712845 -152324313 - FRAM SINE Alu -6 170 9 409 309 79 0 chr3 65712847 65713025 -152324133 - L1MC/D LINE L1 -1985 5823 5632 245 307 102 24 chr3 65713510 65713637 -152323521 - L2 LINE L2 -4 3309 3173 1277 249 87 45 chr3 65713757 65714226 -152322932 - MLT2B1 LTR ERVL -29 491 3 182 394 10 0 chr3 65714472 65714571 -152322587 - L2 LINE L2 -626 2688 2589 690 75 0 0 chr3 65714850 65714943 -152322215 + (TA)n Simple_repeat Simple_repeat 1 93 0 1299 81 17 12 chr3 65715044 65715216 -152321942 - AluSq SINE Alu -140 173 1 330 315 94 16 chr3 65715246 65715373 -152321785 - MIR3 SINE MIR -3 205 69 207 0 0 0 chr3 65715573 65715596 -152321562 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2180 93 7 0 chr3 65715596 65715874 -152321284 - AluSp SINE Alu -33 280 1 1612 69 5 0 chr3 65716692 65716894 -152320264 - AluSp SINE Alu -1 312 110 303 167 0 0 chr3 65716971 65717037 -152320121 + C-rich Low_complexity Low_complexity 1 66 0 274 202 0 48 chr3 65717341 65717445 -152319713 + CT-rich Low_complexity Low_complexity 2 100 0 591 188 10 0 chr3 65717625 65717721 -152319437 + AluSc SINE Alu 193 289 -20 495 222 0 0 chr3 65717729 65717846 -152319312 + (TA)n Simple_repeat Simple_repeat 1 117 0 1073 278 51 32 chr3 65717851 65718286 -152318872 + MLT1L LTR MaLR 171 613 -2 330 214 11 34 chr3 65718286 65718371 -152318787 + Charlie7 DNA MER1_type 681 763 -1849 3294 38 0 0 chr3 65718548 65718941 -152318217 - L1PA5 LINE L1 -3 6151 5759 389 217 38 19 chr3 65718946 65719052 -152318106 + Charlie7 DNA MER1_type 750 857 -1755 742 290 81 32 chr3 65719248 65719596 -152317562 - L2 LINE L2 -145 3168 2804 861 255 124 75 chr3 65719605 65720072 -152317086 - MLT1J LTR MaLR -20 491 2 257 250 0 0 chr3 65720075 65720131 -152317027 - L2 LINE L2 -969 2345 2290 598 288 5 16 chr3 65721224 65721408 -152315750 - MIR SINE MIR 0 262 81 28 29 0 0 chr3 65721412 65721447 -152315711 + AT_rich Low_complexity Low_complexity 1 35 0 1890 158 3 0 chr3 65721720 65722011 -152315147 - AluSx SINE Alu -20 292 1 1895 164 0 22 chr3 65722944 65723255 -152313903 - AluJo SINE Alu -8 304 1 24 0 0 0 chr3 65723264 65723288 -152313870 + AT_rich Low_complexity Low_complexity 1 24 0 981 163 0 84 chr3 65723815 65724017 -152313141 - FRAM SINE Alu 0 176 1 226 316 65 36 chr3 65724317 65724485 -152312673 - LTR67 LTR ERVL -6 551 379 1552 136 0 0 chr3 65725521 65725742 -152311416 + AluSg/x SINE Alu 77 297 -15 698 270 60 8 chr3 65725887 65726135 -152311023 + MIR SINE MIR 2 262 0 216 0 0 0 chr3 65726351 65726375 -152310783 + (CA)n Simple_repeat Simple_repeat 2 25 0 2071 112 31 0 chr3 65726847 65727134 -152310024 + AluSx SINE Alu 1 296 -16 2346 113 0 0 chr3 65727742 65728053 -152309105 - AluY SINE Alu 0 311 1 202 224 20 0 chr3 65728845 65728894 -152308264 + (GGGTG)n Simple_repeat Simple_repeat 2 51 0 1051 132 7 7 chr3 65729269 65729421 -152307737 + AluSq/x SINE Alu 1 152 -160 412 130 0 0 chr3 65729421 65729490 -152307668 + Alu SINE Alu 234 302 -8 1791 268 91 47 chr3 65729992 65730787 -152306371 - L1MEc LINE L1 -4215 2181 1308 1598 183 60 0 chr3 65730787 65731071 -152306087 - AluJo SINE Alu -11 301 1 1791 268 91 47 chr3 65731071 65731544 -152305614 - L1MEc LINE L1 -5088 1308 857 1913 149 0 7 chr3 65731602 65731890 -152305268 - AluJo SINE Alu -26 286 1 5856 166 40 9 chr3 65731912 65733612 -152303546 - L1PA16 LINE L1 -9 6157 4511 201 74 0 0 chr3 65733612 65733639 -152303519 + (TG)n Simple_repeat Simple_repeat 2 28 0 5856 166 40 9 chr3 65733639 65733663 -152303495 - L1PA16 LINE L1 -1655 4511 4489 1673 111 149 4 chr3 65733663 65733925 -152303233 - AluSx SINE Alu -2 300 1 5856 166 40 9 chr3 65733925 65734188 -152302970 - L1PA16 LINE L1 -1677 4489 4114 2212 91 0 7 chr3 65734236 65734569 -152302589 - AluSq SINE Alu 0 331 1 27 49 0 0 chr3 65735151 65735192 -152301966 + AT_rich Low_complexity Low_complexity 1 41 0 323 138 86 0 chr3 65735776 65735834 -152301324 - MLT1I LTR MaLR -53 356 294 412 260 20 0 chr3 65736207 65736307 -152300851 + MER69A DNA AcHobo 2 103 -74 231 235 25 12 chr3 65736344 65736425 -152300733 + (TATATG)n Simple_repeat Simple_repeat 5 86 0 24 0 0 0 chr3 65736773 65736797 -152300361 + AT_rich Low_complexity Low_complexity 1 24 0 692 168 8 8 chr3 65736800 65736919 -152300239 - FLAM_A SINE Alu -13 120 2 2188 129 0 0 chr3 65737200 65737502 -152299656 - AluSx SINE Alu -6 306 5 22 0 0 0 chr3 65737985 65738007 -152299151 + AT_rich Low_complexity Low_complexity 1 22 0 900 278 81 30 chr3 65738052 65738422 -152298736 - MLT1I LTR MaLR -10 399 11 794 252 87 34 chr3 65739670 65740051 -152297107 - L1ME3 LINE L1 -2 6160 5760 2299 84 3 35 chr3 65740116 65740427 -152296731 + AluSx SINE Alu 1 301 -11 302 346 217 13 chr3 65740617 65741382 -152295776 - L2 LINE L2 -1828 1486 566 1022 164 40 30 chr3 65741522 65741723 -152295435 + MER3 DNA MER1_type 1 203 -6 472 262 47 17 chr3 65742063 65742296 -152294862 + L1MC5 LINE L1 7484 7723 -238 21 0 0 0 chr3 65742443 65742464 -152294694 + AT_rich Low_complexity Low_complexity 1 21 0 421 319 96 0 chr3 65742567 65742702 -152294456 - MIR SINE MIR -80 182 35 227 333 103 0 chr3 65742953 65743031 -152294127 - L2 LINE L2 -1 3271 3186 2408 78 3 0 chr3 65743120 65743416 -152293742 + AluSp SINE Alu 1 297 -16 1039 202 126 99 chr3 65744310 65744368 -152292790 - MLT1D LTR MaLR 0 505 450 2236 105 0 7 chr3 65744368 65744662 -152292496 + AluSx SINE Alu 4 295 -17 1039 202 126 99 chr3 65744662 65744872 -152292286 - MLT1D LTR MaLR -55 450 247 2102 113 0 41 chr3 65744872 65745191 -152291967 - AluSx SINE Alu -6 306 1 1039 202 126 99 chr3 65745191 65745406 -152291752 - MLT1D LTR MaLR -258 247 8 315 0 0 0 chr3 65745422 65745457 -152291701 + (CA)n Simple_repeat Simple_repeat 2 36 0 1634 127 74 63 chr3 65745747 65746046 -152291112 - AluSx SINE Alu -8 304 3 297 284 71 24 chr3 65746445 65746572 -152290586 + L2 LINE L2 2920 3052 -220 1353 167 31 98 chr3 65747027 65747345 -152289813 + AluJo SINE Alu 1 297 -15 22 0 0 0 chr3 65747596 65747618 -152289540 + AT_rich Low_complexity Low_complexity 1 22 0 2114 103 0 45 chr3 65747788 65748099 -152289059 - AluSg SINE Alu -12 298 2 491 223 19 6 chr3 65748108 65748265 -152288893 - FRAM SINE Alu -4 162 4 4957 220 66 27 chr3 65748888 65750762 -152286396 + L1M3c LINE L1 777 2577 -3805 2357 127 41 55 chr3 65750762 65751147 -152286011 + Tigger2a DNA MER2_type 1 381 -2327 1868 152 10 0 chr3 65751147 65751436 -152285722 + AluSx SINE Alu 1 292 -20 2357 127 41 55 chr3 65751436 65751490 -152285668 + Tigger2a DNA MER2_type 381 434 0 4957 220 66 27 chr3 65751490 65751581 -152285577 + L1M3c LINE L1 2577 2663 -3719 1879 131 56 6 chr3 65751581 65751902 -152285256 - MER44D DNA MER2_type 0 609 3 4957 220 66 27 chr3 65751902 65752408 -152284750 + L1M3c LINE L1 2663 3148 -3234 1941 133 6 49 chr3 65752408 65752732 -152284426 + AluSx SINE Alu 1 310 -2 4957 220 66 27 chr3 65752732 65753054 -152284104 + L1M3c LINE L1 3148 3643 -2739 300 361 8 17 chr3 65753055 65753174 -152283984 - MIR SINE MIR -135 127 10 1884 202 62 5 chr3 65753684 65754100 -152283058 + L1MA4A LINE L1 5854 6293 -10 787 305 114 8 chr3 65754999 65755509 -152281649 + L1ME3 LINE L1 5374 5947 -215 2214 116 0 13 chr3 65755574 65755885 -152281273 + AluSx SINE Alu 1 307 -5 24 77 0 0 chr3 65756307 65756359 -152280799 + AT_rich Low_complexity Low_complexity 1 52 0 2197 115 0 19 chr3 65757209 65757522 -152279636 + AluSx SINE Alu 1 307 -5 2320 99 0 0 chr3 65758043 65758337 -152278821 - AluSc SINE Alu -15 294 1 401 294 69 44 chr3 65759129 65759289 -152277869 - MIR SINE MIR -79 183 20 611 226 8 8 chr3 65760024 65760148 -152277010 - MER94 DNA DNA 0 134 11 256 298 77 22 chr3 65760488 65760669 -152276489 + L1MC4a LINE L1 5729 5919 -1889 2350 156 26 10 chr3 65761260 65761677 -152275481 + Tigger1 DNA MER2_type 1 424 -1994 2062 139 10 0 chr3 65761677 65761972 -152275186 + AluSx SINE Alu 1 298 -14 6094 190 29 17 chr3 65761975 65762386 -152274772 + L1MC1 LINE L1 3951 4356 -1977 2378 103 3 0 chr3 65762386 65762696 -152274462 + AluSx SINE Alu 1 311 -1 6094 190 29 17 chr3 65762696 65763239 -152273919 + L1MC1 LINE L1 4356 4891 -1442 623 244 0 8 chr3 65763239 65763370 -152273788 + FLAM_A SINE Alu 1 130 -3 6094 190 29 17 chr3 65763370 65764723 -152272435 + L1MC1 LINE L1 4891 6287 -46 1394 123 23 5 chr3 65765526 65765745 -152271413 - L1PA15 LINE L1 -2 6163 5941 249 57 0 0 chr3 65766262 65766297 -152270861 + (TG)n Simple_repeat Simple_repeat 2 36 0 2244 116 3 0 chr3 65766920 65767222 -152269936 - AluSx SINE Alu -3 309 7 1796 162 0 26 chr3 65767230 65767532 -152269626 - AluJo SINE Alu -18 294 1 2238 101 3 10 chr3 65768109 65768415 -152268743 + AluSp SINE Alu 1 304 -9 23 33 0 0 chr3 65768609 65768639 -152268519 + AT_rich Low_complexity Low_complexity 1 30 0 1183 164 121 123 chr3 65768641 65769009 -152268149 + Charlie4a DNA MER1_type 6 373 -1588 1885 98 11 29 chr3 65769009 65769284 -152267874 + AluSx SINE Alu 1 270 -42 1183 164 121 123 chr3 65769284 65769299 -152267859 + Charlie4a DNA MER1_type 373 387 -1574 207 69 0 0 chr3 65769299 65769328 -152267830 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1183 164 121 123 chr3 65769328 65769389 -152267769 + Charlie4a DNA MER1_type 387 450 -58 1608 146 76 38 chr3 65769410 65769698 -152267460 + AluJb SINE Alu 2 300 -12 26 50 0 0 chr3 65770864 65770904 -152266254 + AT_rich Low_complexity Low_complexity 1 40 0 524 209 103 76 chr3 65771600 65771768 -152265390 - HAL1 LINE L1 0 2507 2328 2541 71 0 0 chr3 65771768 65772079 -152265079 + AluY SINE Alu 1 311 0 524 209 103 76 chr3 65772079 65772173 -152264985 - HAL1 LINE L1 -179 2328 2238 37 76 0 0 chr3 65772424 65772503 -152264655 + AT_rich Low_complexity Low_complexity 1 79 0 1624 184 3 26 chr3 65773043 65773353 -152263805 - AluJb SINE Alu -9 303 1 1786 80 134 0 chr3 65773372 65773634 -152263524 - AluY SINE Alu -4 297 1 835 163 0 0 chr3 65773661 65773784 -152263374 + FLAM_C SINE Alu 1 123 -20 21 36 0 0 chr3 65773784 65773812 -152263346 + AT_rich Low_complexity Low_complexity 1 28 0 705 275 46 4 chr3 65773812 65774052 -152263106 + L1MC4a LINE L1 5600 5849 -1959 1569 100 0 0 chr3 65774978 65775178 -152261980 - AluSq SINE Alu -113 200 1 2200 114 0 3 chr3 65775329 65775626 -152261532 + AluSx SINE Alu 3 298 -14 2142 100 0 45 chr3 65775636 65775947 -152261211 + AluSg SINE Alu 2 298 -12 22 0 0 0 chr3 65776117 65776139 -152261019 + AT_rich Low_complexity Low_complexity 1 22 0 1353 167 31 98 chr3 65776390 65776708 -152260450 - AluJo SINE Alu -15 297 1 297 284 71 24 chr3 65777163 65777290 -152259868 - L2 LINE L2 -220 3052 2920 1634 127 74 63 chr3 65777689 65777988 -152259170 + AluSx SINE Alu 3 304 -8 315 0 0 0 chr3 65778278 65778313 -152258845 + (TG)n Simple_repeat Simple_repeat 2 36 0 1039 202 126 99 chr3 65778329 65778544 -152258614 + MLT1D LTR MaLR 8 216 -289 2102 113 0 41 chr3 65778544 65778863 -152258295 + AluSx SINE Alu 1 306 -6 1039 202 126 99 chr3 65778863 65779073 -152258085 + MLT1D LTR MaLR 216 450 -55 2236 105 0 7 chr3 65779073 65779367 -152257791 - AluSx SINE Alu -17 295 4 1039 202 126 99 chr3 65779367 65779425 -152257733 + MLT1D LTR MaLR 450 505 0 2408 78 3 0 chr3 65780319 65780615 -152256543 - AluSp SINE Alu -16 297 1 227 333 103 0 chr3 65780704 65780782 -152256376 + L2 LINE L2 3186 3271 -1 421 319 96 0 chr3 65781033 65781168 -152255990 + MIR SINE MIR 35 182 -80 21 0 0 0 chr3 65781271 65781292 -152255866 + AT_rich Low_complexity Low_complexity 1 21 0 472 262 47 17 chr3 65781439 65781672 -152255486 - L1MC5 LINE L1 -238 7723 7484 1022 164 40 30 chr3 65782012 65782213 -152254945 - MER3 DNA MER1_type -6 203 1 302 346 217 13 chr3 65782353 65783118 -152254040 + L2 LINE L2 566 1486 -1828 2299 84 3 35 chr3 65783308 65783619 -152253539 - AluSx SINE Alu -11 301 1 794 252 87 34 chr3 65783684 65784065 -152253093 + L1ME3 LINE L1 5760 6160 -2 900 278 81 30 chr3 65785312 65785682 -152251476 + MLT1I LTR MaLR 11 399 -10 22 0 0 0 chr3 65785727 65785749 -152251409 + AT_rich Low_complexity Low_complexity 1 22 0 2204 126 0 0 chr3 65786232 65786534 -152250624 + AluSx SINE Alu 5 306 -6 702 168 8 8 chr3 65786815 65786934 -152250224 + FLAM_A SINE Alu 2 120 -13 24 0 0 0 chr3 65786937 65786961 -152250197 + AT_rich Low_complexity Low_complexity 1 24 0 231 235 25 12 chr3 65787309 65787390 -152249768 + (CATATA)n Simple_repeat Simple_repeat 5 86 0 412 260 20 0 chr3 65787427 65787527 -152249631 - MER69A DNA AcHobo -74 103 2 301 138 86 0 chr3 65787900 65787958 -152249200 + MLT1I LTR MaLR 294 356 -53 27 49 0 0 chr3 65788542 65788583 -152248575 + AT_rich Low_complexity Low_complexity 1 41 0 2579 33 0 3 chr3 65789165 65789464 -152247694 + AluY SINE Alu 1 298 -13 21 0 0 0 chr3 65789846 65789867 -152247291 + AT_rich Low_complexity Low_complexity 1 21 0 3852 74 19 2 chr3 65790297 65790866 -152246292 + L1P LINE L1 3997 4575 -1571 1638 183 60 0 chr3 65790997 65791281 -152245877 + AluJo SINE Alu 1 301 -11 1259 246 139 42 chr3 65791284 65792076 -152245082 + L1MEc LINE L1 1313 2181 -4215 2341 105 0 0 chr3 65792578 65792882 -152244276 - AluSx SINE Alu -8 304 1 560 113 78 0 chr3 65793034 65793149 -152244009 - L1MA9 LINE L1 -22 6290 6167 2116 130 10 0 chr3 65793394 65793702 -152243456 + AluSp SINE Alu 1 311 -2 628 167 13 197 chr3 65793890 65794129 -152243029 - LTR49-int LTR ERV1 -2872 3459 3265 700 161 15 0 chr3 65794182 65794319 -152242839 - LTR49-int LTR ERV1 -3059 3272 3134 2266 89 7 3 chr3 65794321 65794613 -152242545 - AluSx SINE Alu -10 302 10 1443 133 9 4 chr3 65794714 65794940 -152242218 + AluSg/x SINE Alu 80 306 -4 1978 122 7 7 chr3 65794992 65795278 -152241880 + AluSx SINE Alu 1 286 -26 2508 78 0 0 chr3 65795647 65795954 -152241204 - AluY SINE Alu -4 307 1 838 204 192 21 chr3 65796197 65796437 -152240721 - AluSc SINE Alu -18 281 1 710 198 0 0 chr3 65797732 65797848 -152239310 + FLAM_C SINE Alu 1 116 -17 1743 131 50 34 chr3 65798357 65798655 -152238503 + AluSx SINE Alu 1 303 -9 1104 189 11 0 chr3 65799023 65799213 -152237945 - AluJb SINE Alu -8 304 113 2048 118 10 14 chr3 65799219 65799507 -152237651 + AluSp SINE Alu 1 287 -26 903 118 0 22 chr3 65800159 65800294 -152236864 + FLAM_C SINE Alu 6 137 -6 1957 131 32 0 chr3 65800410 65800693 -152236465 - AluJb SINE Alu -20 292 1 2086 75 108 7 chr3 65800781 65801060 -152236098 - AluSx SINE Alu -5 307 1 2258 107 0 7 chr3 65801548 65801847 -152235311 - AluSx SINE Alu -15 297 1 24 0 0 0 chr3 65802032 65802056 -152235102 + AT_rich Low_complexity Low_complexity 1 24 0 3103 155 96 6 chr3 65802068 65802753 -152234405 + L1MB8 LINE L1 5297 6043 -135 2243 69 10 17 chr3 65803042 65803349 -152233809 - AluSc SINE Alu 0 309 2 537 138 268 0 chr3 65803379 65803517 -152233641 + L1MA3 LINE L1 6123 6297 -8 24 32 0 0 chr3 65803554 65803585 -152233573 + AT_rich Low_complexity Low_complexity 1 31 0 1955 143 7 17 chr3 65803586 65803886 -152233272 + AluJo SINE Alu 1 297 -15 1721 159 0 51 chr3 65803894 65804208 -152232950 + AluJb SINE Alu 1 298 -14 24 0 0 0 chr3 65804622 65804646 -152232512 + AT_rich Low_complexity Low_complexity 1 24 0 1083 103 0 0 chr3 65804646 65804782 -152232376 + AluSq/x SINE Alu 1 136 -176 1805 153 14 14 chr3 65804982 65805270 -152231888 - AluJb SINE Alu -24 288 1 1227 45 0 0 chr3 65805369 65805523 -152231635 + L1PA6 LINE L1 6001 6154 0 838 164 15 15 chr3 65805558 65805692 -152231466 + FRAM SINE Alu 20 153 -23 2469 90 0 0 chr3 65808249 65808561 -152228597 + AluSq SINE Alu 1 312 -1 319 57 25 287 chr3 65809724 65809771 -152227387 + L1PB2 LINE L1 6055 6053 -98 1571 129 4 26 chr3 65809771 65810004 -152227154 + AluSx SINE Alu 2 229 -83 319 57 25 287 chr3 65810004 65810078 -152227080 + L1PB2 LINE L1 6052 6144 -7 32 26 0 0 chr3 65810078 65810117 -152227041 + AT_rich Low_complexity Low_complexity 1 39 0 724 190 0 0 chr3 65810122 65810243 -152226915 + AluJb SINE Alu 3 123 -189 336 246 177 31 chr3 65810401 65810531 -152226627 - L2 LINE L2 0 3313 3165 619 194 0 0 chr3 65810561 65810669 -152226489 + FRAM SINE Alu 55 162 -14 542 345 42 26 chr3 65810669 65810933 -152226225 - L2 LINE L2 -183 3130 2863 885 147 0 0 chr3 65810987 65811270 -152225888 + FLAM_C SINE Alu 1 283 0 206 118 0 0 chr3 65811703 65811737 -152225421 + (T)n Simple_repeat Simple_repeat 1 34 0 546 280 35 86 chr3 65811913 65812015 -152225143 - MIR SINE MIR -11 251 145 2345 85 0 3 chr3 65812015 65812322 -152224836 - AluSg SINE Alu -1 309 4 546 280 35 86 chr3 65812322 65812476 -152224682 - MIR SINE MIR -117 145 8 360 203 89 0 chr3 65812491 65812570 -152224588 - MIR SINE MIR -1 261 176 367 291 127 46 chr3 65812653 65812771 -152224387 - Charlie8 DNA MER1_type -79 262 155 258 105 0 0 chr3 65812771 65812809 -152224349 + (TG)n Simple_repeat Simple_repeat 2 39 0 367 291 127 46 chr3 65812809 65812927 -152224231 - Charlie8 DNA MER1_type -186 155 7 270 237 51 0 chr3 65812935 65812994 -152224164 - MIR SINE MIR -82 180 119 22 0 0 0 chr3 65813784 65813806 -152223352 + AT_rich Low_complexity Low_complexity 1 22 0 856 177 7 14 chr3 65814017 65814164 -152222994 + FRAM SINE Alu 1 145 -31 2233 106 23 0 chr3 65814640 65814942 -152222216 + AluSx SINE Alu 1 309 -3 260 243 112 0 chr3 65814980 65815087 -152222071 + L1ME3A LINE L1 5844 5962 -208 404 248 8 0 chr3 65815358 65815483 -152221675 - L1MC5 LINE L1 -100 7861 7736 804 148 0 23 chr3 65815485 65815613 -152221545 + FLAM_C SINE Alu 1 125 -18 23 0 0 0 chr3 65815613 65815636 -152221522 + AT_rich Low_complexity Low_complexity 1 23 0 1375 146 29 0 chr3 65815641 65815846 -152221312 + AluJb SINE Alu 85 295 -17 932 186 26 0 chr3 65815851 65816007 -152221151 + FRAM SINE Alu 3 162 -4 2162 99 3 0 chr3 65816012 65816327 -152220831 + AluSp SINE Alu 1 316 0 1997 125 11 0 chr3 65816560 65816870 -152220288 + AluY SINE Alu 1 313 0 1191 192 119 16 chr3 65817037 65817349 -152219809 - MER2 DNA MER2_type 0 345 2 661 120 9 19 chr3 65817502 65817610 -152219548 + HY1 scRNA scRNA 3 109 -3 974 197 91 23 chr3 65817623 65817794 -152219364 + L1M4 LINE L1 3912 4070 -2076 1738 176 4 0 chr3 65817794 65818090 -152219068 + AluJb SINE Alu 11 307 0 974 197 91 23 chr3 65818090 65818104 -152219054 + L1M4 LINE L1 4070 4082 -2064 1734 172 0 31 chr3 65818104 65818438 -152218720 + AluJb SINE Alu 1 325 0 974 197 91 23 chr3 65818438 65818558 -152218600 + L1M4 LINE L1 4082 4241 -1905 1964 167 0 0 chr3 65818560 65818853 -152218305 + AluJb SINE Alu 1 293 -19 581 203 0 0 chr3 65818855 65818988 -152218170 + L1ME1 LINE L1 2375 2507 -3639 1867 111 0 79 chr3 65819110 65819425 -152217733 + AluSq SINE Alu 1 290 -23 249 145 40 0 chr3 65819425 65819501 -152217657 + (TA)n Simple_repeat Simple_repeat 1 79 0 223 145 29 0 chr3 65819559 65819628 -152217530 + (TA)n Simple_repeat Simple_repeat 1 71 0 283 159 45 6 chr3 65819644 65819801 -152217357 + (TA)n Simple_repeat Simple_repeat 2 164 0 21 0 0 0 chr3 65819812 65819833 -152217325 + AT_rich Low_complexity Low_complexity 1 21 0 263 240 31 21 chr3 65819833 65819929 -152217229 + L1 LINE L1 2373 2469 -3677 863 228 56 9 chr3 65819933 65820166 -152216992 + MLT1F1 LTR MaLR 296 539 -28 986 262 15 9 chr3 65820170 65820494 -152216664 + L1ME1 LINE L1 3805 4130 -2016 2346 102 0 0 chr3 65820522 65820817 -152216341 + AluSp SINE Alu 1 295 -18 2556 218 18 11 chr3 65820819 65821476 -152215682 + L1ME1 LINE L1 4381 5042 -1104 793 251 23 4 chr3 65821507 65821766 -152215392 + L1ME1 LINE L1 5031 5294 -852 619 162 70 95 chr3 65821804 65822145 -152215013 + L1ME1 LINE L1 5281 5487 -679 1005 189 0 12 chr3 65822153 65822317 -152214841 - FRAM SINE Alu -15 161 1 2093 186 45 79 chr3 65822320 65822553 -152214605 + L1ME1 LINE L1 5581 5820 -346 2343 94 0 0 chr3 65822553 65822851 -152214307 + AluY SINE Alu 1 298 -13 2093 186 45 79 chr3 65822851 65823214 -152213944 + L1ME1 LINE L1 5820 6157 -9 1681 178 3 54 chr3 65823347 65823483 -152213675 + AluJo SINE Alu 1 142 -170 261 0 0 0 chr3 65823483 65823512 -152213646 + (TA)n Simple_repeat Simple_repeat 1 29 0 1681 178 3 54 chr3 65823512 65823689 -152213469 + AluJo SINE Alu 142 298 -14 2169 112 3 3 chr3 65823881 65824176 -152212982 - AluSx SINE Alu -17 295 1 1865 115 4 4 chr3 65824680 65824933 -152212225 - AluSq SINE Alu -60 253 1 4848 186 9 2 chr3 65824933 65825968 -152211190 - L1 LINE L1 -2356 5209 4168 477 79 11 22 chr3 65826024 65826113 -152211045 - L1 LINE L1 -4287 3278 3191 18532 130 27 20 chr3 65826812 65827314 -152209844 - L1 LINE L1 -4362 3203 2706 2145 119 3 22 chr3 65827314 65827626 -152209532 + AluSx SINE Alu 1 306 -6 18532 130 27 20 chr3 65827626 65830303 -152206855 - L1 LINE L1 -4859 2706 3 236 221 191 73 chr3 65830310 65830345 -152206813 - L3 LINE CR1 -148 1429 1400 2142 133 3 0 chr3 65830345 65830645 -152206513 - AluSx SINE Alu -11 301 1 236 221 191 73 chr3 65830645 65830745 -152206413 - L3 LINE CR1 -177 1400 1278 655 294 70 5 chr3 65830793 65831007 -152206151 - MIR SINE MIR -14 248 21 1478 171 106 80 chr3 65831050 65831356 -152205802 + MSTD LTR MaLR 1 298 -98 206 31 0 31 chr3 65831356 65831388 -152205770 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 2368 71 3 0 chr3 65831391 65831674 -152205484 - AluSp SINE Alu -25 288 5 2250 105 3 0 chr3 65831677 65831971 -152205187 - AluSg SINE Alu -15 295 1 1478 171 106 80 chr3 65831971 65832042 -152205116 + MSTD LTR MaLR 300 396 0 655 165 0 0 chr3 65832092 65832195 -152204963 - U6 snRNA snRNA -4 103 1 705 243 104 5 chr3 65832195 65832397 -152204761 - L3 LINE CR1 -463 1114 893 1798 127 73 4 chr3 65832767 65833042 -152204116 + AluJb SINE Alu 1 294 -18 21 57 0 0 chr3 65833079 65833114 -152204044 + AT_rich Low_complexity Low_complexity 1 35 0 2460 71 0 0 chr3 65833525 65833819 -152203339 - AluSc SINE Alu -15 294 1 180 77 0 0 chr3 65834276 65834302 -152202856 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 1475 302 107 60 chr3 65834422 65835438 -152201720 + L2 LINE L2 2025 2991 -322 2343 99 0 10 chr3 65835438 65835752 -152201406 - AluY SINE Alu 0 311 1 1475 302 107 60 chr3 65835752 65835886 -152201272 + L2 LINE L2 2991 3117 -196 2091 120 3 0 chr3 65835886 65836178 -152200980 - AluSx SINE Alu -10 302 10 1475 302 107 60 chr3 65836178 65836253 -152200905 + L2 LINE L2 3117 3308 -5 237 366 137 6 chr3 65836281 65836442 -152200716 - L2 LINE L2 -213 3059 2878 1994 151 3 3 chr3 65836484 65836783 -152200375 + AluJb SINE Alu 1 299 -13 2179 109 3 3 chr3 65836882 65837176 -152199982 - AluSx SINE Alu -18 294 1 1396 201 3 24 chr3 65837197 65837485 -152199673 - AluJo SINE Alu -13 299 18 21 0 0 0 chr3 65837679 65837700 -152199458 + AT_rich Low_complexity Low_complexity 1 21 0 755 241 96 6 chr3 65838167 65838333 -152198825 + MIR SINE MIR 6 186 -76 330 336 44 0 chr3 65838903 65839040 -152198118 + MIR3 SINE MIR 51 193 -15 2211 82 10 7 chr3 65839153 65839445 -152197713 - AluSx SINE Alu -6 306 14 5099 120 36 14 chr3 65839545 65839662 -152197496 - L1PB2 LINE L1 -170 5981 5868 2187 102 27 0 chr3 65839662 65839956 -152197202 + AluSg SINE Alu 1 302 -8 5099 120 36 14 chr3 65839956 65840944 -152196214 - L1PB2 LINE L1 -283 5868 4852 205 186 0 0 chr3 65841137 65841180 -152195978 + (TAA)n Simple_repeat Simple_repeat 1 43 0 2139 130 3 19 chr3 65841389 65841697 -152195461 - AluJb SINE Alu -9 303 1 233 316 51 0 chr3 65842102 65842181 -152194977 - L1ME3A LINE L1 -100 6070 5988 44976 40 1 0 chr3 65842276 65848422 -152188736 - L1PA4 LINE L1 0 6155 1 1081 261 117 67 chr3 65848613 65848774 -152188384 - L1ME3A LINE L1 -21 6149 5997 2414 92 0 0 chr3 65848774 65849077 -152188081 - AluSg SINE Alu -7 303 1 1081 261 117 67 chr3 65849077 65849788 -152187370 - L1ME3A LINE L1 -173 5997 5219 437 110 0 61 chr3 65849788 65849870 -152187288 - L1MB2 LINE L1 -11 6160 6084 1081 261 117 67 chr3 65849870 65849977 -152187181 - L1ME3A LINE L1 -951 5219 5119 306 106 0 0 chr3 65849991 65850038 -152187120 + (TTTC)n Simple_repeat Simple_repeat 4 50 0 379 271 73 28 chr3 65850066 65850284 -152186874 - L1ME3A LINE L1 -987 5159 4932 2409 69 0 0 chr3 65850611 65850902 -152186256 + AluSx SINE Alu 1 291 -21 264 51 77 0 chr3 65851787 65851826 -152185332 - L2 LINE L2 -4 3309 3268 23 0 0 0 chr3 65851834 65851857 -152185301 + AT_rich Low_complexity Low_complexity 1 23 0 198 245 20 0 chr3 65851878 65851927 -152185231 + L2 LINE L2 3264 3313 0 1930 99 58 51 chr3 65852008 65852300 -152184858 - AluSp SINE Alu -14 299 6 1567 157 3 82 chr3 65852372 65852437 -152184721 - AluJo SINE Alu -19 293 224 4872 132 42 51 chr3 65852437 65853238 -152183920 + LTR25 LTR ERV1 1 794 0 1567 157 3 82 chr3 65853238 65853490 -152183668 - AluJo SINE Alu -88 224 1 721 189 33 20 chr3 65853554 65853707 -152183451 + MLT1E3 LTR MaLR 51 205 -419 723 173 38 23 chr3 65853713 65853846 -152183312 + AluJb SINE Alu 2 136 -176 248 216 11 116 chr3 65853930 65854044 -152183114 + MLT2C1 LTR ERVL 268 357 -40 297 132 0 19 chr3 65854090 65854143 -152183015 + MLT2F LTR ERVL 612 663 0 2111 47 36 29 chr3 65854352 65854653 -152182505 + AluSc SINE Alu 1 303 0 399 318 76 33 chr3 65854733 65854944 -152182214 + MIR SINE MIR 23 242 -20 275 353 143 0 chr3 65855184 65855303 -152181855 + L2 LINE L2 3136 3271 -1 454 218 194 6 chr3 65857390 65857555 -152179603 - MIR SINE MIR -1 261 66 775 176 40 0 chr3 65857587 65857735 -152179423 - FRAM SINE Alu -13 163 10 298 162 44 0 chr3 65857776 65857844 -152179314 + MER53 DNA DNA 3 73 -116 1282 135 96 5 chr3 65858019 65858227 -152178931 - AluJb SINE Alu -85 227 1 428 148 0 0 chr3 65858468 65858529 -152178629 - AluS SINE Alu -256 62 2 2204 123 0 7 chr3 65858618 65858927 -152178231 - AluSx SINE Alu -5 307 1 23 0 0 0 chr3 65858929 65858952 -152178206 + AT_rich Low_complexity Low_complexity 1 23 0 993 192 0 18 chr3 65858952 65859119 -152178039 - FAM SINE Alu -11 164 1 408 154 0 39 chr3 65859121 65859199 -152177959 + LTR49-int LTR ERV1 4426 4500 -3620 737 148 0 9 chr3 65859215 65859323 -152177835 - U6 snRNA snRNA 0 107 1 3620 184 74 62 chr3 65859323 65859448 -152177710 + LTR49-int LTR ERV1 2864 2986 -3292 1642 182 14 3 chr3 65859448 65859734 -152177424 - AluJb SINE Alu -23 289 1 3620 184 74 62 chr3 65859734 65860687 -152176471 + LTR49-int LTR ERV1 2986 5063 -1215 837 160 0 60 chr3 65860704 65860854 -152176304 + FLAM_C SINE Alu 2 142 -1 405 227 55 9 chr3 65861123 65861233 -152175925 - AluSp SINE Alu -197 116 2 202 224 20 0 chr3 65861609 65861658 -152175500 + (CACCC)n Simple_repeat Simple_repeat 2 51 0 2095 109 11 3 chr3 65862452 65862736 -152174422 + AluY SINE Alu 1 286 -25 270 0 0 0 chr3 65862740 65862770 -152174388 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 272 94 57 38 chr3 65864344 65864397 -152172761 + L1MC1 LINE L1 6280 6333 0 25 51 0 0 chr3 65864415 65864454 -152172704 + AT_rich Low_complexity Low_complexity 1 39 0 1677 191 3 3 chr3 65864505 65864803 -152172355 - AluJo SINE Alu -14 298 1 7158 133 68 122 chr3 65864946 65866739 -152170419 - pTR5 LTR ERV1 0 2438 743 2188 105 7 10 chr3 65866798 65867092 -152170066 + AluSx SINE Alu 5 297 -15 2183 104 3 0 chr3 65867095 65867382 -152169776 + AluSp SINE Alu 1 288 -25 279 263 189 0 chr3 65867493 65867588 -152169570 - L2 LINE L2 0 3272 3160 1240 269 95 21 chr3 65867627 65868047 -152169111 + LTR16A1 LTR ERVL 7 457 0 461 50 17 0 chr3 65868116 65868176 -152168982 + MER53 DNA DNA 1 61 -128 1952 133 0 25 chr3 65868177 65868492 -152168666 + AluJb SINE Alu 1 307 -5 1463 128 8 13 chr3 65868495 65868730 -152168428 + MER50 LTR ERV1 1 234 -500 * 1571 147 90 7 chr3 65868728 65869007 -152168151 + MER50 LTR ERV1 433 734 0 868 79 71 29 chr3 65869049 65869189 -152167969 - MER53 DNA DNA -42 147 2 1368 175 7 62 chr3 65870359 65870414 -152166744 + AluJo SINE Alu 7 63 -249 1946 118 35 3 chr3 65870414 65870701 -152166457 - AluSx SINE Alu -15 297 2 1368 175 7 62 chr3 65870701 65870937 -152166221 + AluJo SINE Alu 63 282 -30 186 43 0 0 chr3 65870940 65870963 -152166195 + (CA)n Simple_repeat Simple_repeat 2 24 0 2177 114 3 0 chr3 65871027 65871324 -152165834 + AluSp SINE Alu 1 298 -15 835 202 0 0 chr3 65871417 65871546 -152165612 + AluJo SINE Alu 2 130 -182 33 43 0 0 chr3 65871875 65871922 -152165236 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr3 65872066 65872088 -152165070 + AT_rich Low_complexity Low_complexity 1 22 0 1932 116 7 21 chr3 65872112 65872424 -152164734 + AluSx SINE Alu 1 308 0 758 270 87 114 chr3 65873519 65874306 -152162852 + L2 LINE L2 2292 3059 -213 1533 195 96 10 chr3 65875400 65875713 -152161445 + MER58B DNA MER1_type 2 341 0 182 128 26 0 chr3 65876070 65876109 -152161049 + CT-rich Low_complexity Low_complexity 1 40 0 254 154 0 99 chr3 65876260 65876351 -152160807 + L1ME4a LINE L1 6039 6120 -1 22 35 0 0 chr3 65876686 65876715 -152160443 + AT_rich Low_complexity Low_complexity 1 29 0 1392 153 9 22 chr3 65876914 65877136 -152160022 + MER20 DNA MER1_type 1 219 0 769 313 15 0 chr3 65877566 65877764 -152159394 + MIR SINE MIR 34 234 -28 21 89 0 0 chr3 65878126 65878182 -152158976 + AT_rich Low_complexity Low_complexity 1 56 0 2184 113 0 0 chr3 65879070 65879380 -152157778 - AluSq SINE Alu 0 310 1 938 212 0 18 chr3 65879956 65880121 -152157037 + AluJo SINE Alu 137 298 -4 453 111 83 28 chr3 65880253 65880325 -152156833 - AluS SINE Alu -232 77 2 24 32 0 0 chr3 65880370 65880401 -152156757 + AT_rich Low_complexity Low_complexity 1 31 0 205 225 0 0 chr3 65880526 65880566 -152156592 + L2 LINE L2 3232 3271 -1 1007 128 0 0 chr3 65880600 65880741 -152156417 - AluSg/x SINE Alu -16 296 156 4396 153 57 12 chr3 65880765 65881537 -152155621 + L1M3f LINE L1 144 950 -4378 722 266 54 4 chr3 65881544 65881785 -152155373 + L1MC4a LINE L1 3231 3483 -2663 306 333 0 81 chr3 65881820 65882066 -152155092 + MLT1I LTR MaLR 107 332 -77 728 255 52 8 chr3 65882105 65882356 -152154802 + L1MC4a LINE L1 3494 3755 -2391 256 274 28 73 chr3 65882549 65882728 -152154430 + L1MC4a LINE L1 5254 5424 -2384 225 0 0 0 chr3 65882897 65882922 -152154236 + (CA)n Simple_repeat Simple_repeat 1 25 0 398 268 78 37 chr3 65882934 65883177 -152153981 + L1MC4a LINE L1 5797 6049 -1759 396 301 49 0 chr3 65883385 65883508 -152153650 - MIR SINE MIR -106 156 28 1577 148 22 47 chr3 65883585 65883862 -152153296 - AluJo SINE Alu -21 291 22 1926 117 10 40 chr3 65883952 65884250 -152152908 - AluSx SINE Alu -23 289 1 248 143 0 0 chr3 65885014 65885049 -152152109 - MLT1K LTR MaLR -13 575 541 506 163 100 0 chr3 65885080 65885160 -152151998 + FRAM SINE Alu 63 150 -26 1679 155 59 0 chr3 65885169 65885440 -152151718 + AluJo SINE Alu 1 287 -25 24 0 0 0 chr3 65885440 65885464 -152151694 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr3 65885530 65885563 -152151595 + AT_rich Low_complexity Low_complexity 1 33 0 340 319 36 14 chr3 65885839 65885977 -152151181 - MIR3 SINE MIR -15 193 53 5382 97 14 24 chr3 65886069 65886834 -152150324 + L1PA16 LINE L1 5409 6166 0 23 0 0 0 chr3 65886948 65886971 -152150187 + AT_rich Low_complexity Low_complexity 1 23 0 556 189 0 19 chr3 65886973 65887079 -152150079 - U13 snRNA snRNA 0 104 1 22 56 0 0 chr3 65887195 65887231 -152149927 + AT_rich Low_complexity Low_complexity 1 36 0 1871 124 0 0 chr3 65887578 65887835 -152149323 - AluSx SINE Alu -55 257 1 730 84 0 28 chr3 65887982 65888089 -152149069 + AluJb SINE Alu 85 188 -124 275 186 31 21 chr3 65888089 65888186 -152148972 + (TA)n Simple_repeat Simple_repeat 1 98 0 264 330 209 14 chr3 65888688 65888903 -152148255 - MIR SINE MIR 0 262 6 336 291 103 0 chr3 65888997 65889114 -152148044 + MIR SINE MIR 84 212 -50 31 26 0 0 chr3 65889844 65889882 -152147276 + AT_rich Low_complexity Low_complexity 1 38 0 2301 99 3 0 chr3 65890033 65890327 -152146831 + AluSx SINE Alu 1 295 -17 271 121 35 0 chr3 65890497 65890555 -152146603 + (TA)n Simple_repeat Simple_repeat 1 60 0 864 266 22 48 chr3 65890646 65891105 -152146053 + L1MC4a LINE L1 3839 4285 -1861 21 36 0 0 chr3 65891105 65891133 -152146025 + AT_rich Low_complexity Low_complexity 1 28 0 2061 123 3 3 chr3 65891133 65891425 -152145733 - AluSq SINE Alu -21 292 1 609 144 0 0 chr3 65891629 65891719 -152145439 - AluS SINE Alu -223 90 1 852 58 17 116 chr3 65891719 65891892 -152145266 - L1MA3 LINE L1 -238 6067 5912 2325 108 0 0 chr3 65891965 65892271 -152144887 - AluSx SINE Alu -6 306 1 1913 139 0 30 chr3 65892273 65892576 -152144582 - AluJo SINE Alu -18 294 1 378 244 24 0 chr3 65892770 65892852 -152144306 - MER63 DNA MER1_type 0 1061 978 401 189 79 102 chr3 65892854 65892932 -152144226 - MER63 DNA MER1_type -312 750 672 1998 146 0 7 chr3 65892932 65893272 -152143886 - AluSx SINE Alu 0 312 1 401 189 79 102 chr3 65893272 65893320 -152143838 - MER63 DNA MER1_type -390 672 1 22 35 0 0 chr3 65893697 65893726 -152143432 + AT_rich Low_complexity Low_complexity 1 29 0 24 77 0 0 chr3 65894033 65894085 -152143073 + AT_rich Low_complexity Low_complexity 1 52 0 24 77 0 0 chr3 65894111 65894163 -152142995 + AT_rich Low_complexity Low_complexity 1 52 0 2279 120 0 3 chr3 65894438 65894747 -152142411 + AluSg SINE Alu 1 308 -2 1279 105 102 77 chr3 65896017 65896112 -152141046 + L1MA8 LINE L1 5969 6060 -231 2456 100 0 0 chr3 65896112 65896423 -152140735 + AluSx SINE Alu 1 311 -1 1279 105 102 77 chr3 65896423 65896640 -152140518 + L1MA8 LINE L1 6060 6289 -2 1755 166 16 3 chr3 65896890 65897198 -152139960 + AluJb SINE Alu 1 312 0 434 198 12 12 chr3 65897843 65897924 -152139234 - L2 LINE L2 -43 3270 3190 656 285 85 35 chr3 65898023 65898708 -152138450 + L1MC4a LINE L1 4533 5251 -895 1431 151 32 0 chr3 65898735 65898986 -152138172 + L1MB2 LINE L1 5847 6105 -66 829 75 9 0 chr3 65898987 65899093 -152138065 + U6 snRNA snRNA 1 107 0 4516 73 0 18 chr3 65899093 65899394 -152137764 + L1PA8A LINE L1 5486 5791 -340 2315 92 3 7 chr3 65899394 65899689 -152137469 + AluSg1 SINE Alu 1 294 -15 4516 73 0 18 chr3 65899689 65900017 -152137141 + L1PA8A LINE L1 5791 6104 -27 447 73 59 0 chr3 65900054 65900122 -152137036 + L1MB2 LINE L1 6093 6164 -7 4578 207 100 55 chr3 65900143 65900649 -152136509 + L1MC4a LINE L1 5298 5780 -2028 2494 87 0 0 chr3 65900649 65900959 -152136199 + AluSx SINE Alu 1 310 -2 4578 207 100 55 chr3 65900959 65902001 -152135157 + L1MC4a LINE L1 5780 6937 -871 992 150 0 0 chr3 65902001 65902154 -152135004 + FRAM SINE Alu 1 153 -13 4578 207 100 55 chr3 65902154 65902359 -152134799 + L1MC4a LINE L1 6937 7131 -677 450 198 18 9 chr3 65902354 65902465 -152134693 + L1MD3 LINE L1 7882 7993 -2 * 2214 117 0 0 chr3 65902591 65902899 -152134259 - AluSg SINE Alu -2 308 1 1209 308 50 47 chr3 65902970 65903943 -152133215 + L2 LINE L2 2344 3313 0 1634 174 3 25 chr3 65904302 65904618 -152132540 + AluJb SINE Alu 1 309 -3 2133 136 0 13 chr3 65904780 65905096 -152132062 + AluSx SINE Alu 1 312 0 199 355 97 7 chr3 65905226 65905381 -152131777 - L2 LINE L2 -823 2491 2323 853 168 10 0 chr3 65905602 65905775 -152131383 - L1MC/D LINE L1 -721 5433 5310 1915 103 78 0 chr3 65906646 65906928 -152130230 - AluSq SINE Alu -9 304 1 2383 66 7 0 chr3 65906970 65907274 -152129884 - AluY SINE Alu -2 309 4 842 230 0 0 chr3 65907276 65907480 -152129678 - L1MC/D LINE L1 -816 5330 5127 1105 72 0 0 chr3 65907493 65907631 -152129527 + AluSg/x SINE Alu 175 312 0 913 207 15 88 chr3 65907645 65907922 -152129236 - L1MC/D LINE L1 -1031 5115 4866 833 138 0 8 chr3 65907922 65908052 -152129106 + FLAM_A SINE Alu 4 132 -1 913 207 15 88 chr3 65908052 65908117 -152129041 - L1MC/D LINE L1 -1280 4866 4798 2187 104 3 0 chr3 65908143 65908431 -152128727 + AluSq SINE Alu 1 289 -24 2182 144 0 0 chr3 65908479 65908791 -152128367 + AluSx SINE Alu 1 312 0 238 314 93 0 chr3 65909365 65909451 -152127707 + L2 LINE L2 3172 3265 -7 1794 183 3 3 chr3 65909638 65909939 -152127219 + AluJb SINE Alu 1 301 -11 40 49 0 0 chr3 65910187 65910248 -152126910 + AT_rich Low_complexity Low_complexity 1 61 0 552 218 318 23 chr3 65910712 65910932 -152126226 + L2 LINE L2 3014 3298 -15 216 67 0 0 chr3 65911688 65911718 -152125440 + (A)n Simple_repeat Simple_repeat 1 30 0 419 274 18 9 chr3 65911762 65911875 -152125283 + L2 LINE L2 3198 3311 -2 205 333 28 37 chr3 65911869 65911977 -152125181 - L3 LINE CR1 -4 1573 1467 * 2980 87 41 71 chr3 65912058 65912291 -152124867 - L1MA2 LINE L1 0 6304 6066 2268 113 3 3 chr3 65912291 65912600 -152124558 - AluSx SINE Alu -3 309 1 2980 87 41 71 chr3 65912600 65912932 -152124226 - L1MA2 LINE L1 -238 6066 5756 411 100 0 0 chr3 65912967 65913027 -152124131 - MER41A LTR ERV1 -96 458 399 249 105 0 0 chr3 65913027 65913065 -152124093 - L1MA2 LINE L1 -541 5764 5727 2178 95 17 0 chr3 65913065 65913359 -152123799 - AluSc SINE Alu -10 299 1 1747 132 0 4 chr3 65913361 65913619 -152123539 - AluSx SINE Alu -2 310 54 542 82 0 31 chr3 65913619 65913716 -152123442 - L1MA2 LINE L1 -927 5378 5285 797 192 0 0 chr3 65913755 65913885 -152123273 + FLAM_C SINE Alu 4 133 0 2409 103 55 3 chr3 65913904 65914283 -152122875 - MSTA LTR MaLR -29 399 1 1121 190 44 4 chr3 65914283 65914557 -152122601 - L1 LINE L1 -857 5289 5005 2312 94 3 7 chr3 65914557 65914864 -152122294 - AluSq SINE Alu -7 306 1 1504 146 0 38 chr3 65914864 65915179 -152121979 - L1 LINE L1 -2356 3790 3488 1415 178 24 56 chr3 65915656 65915943 -152121215 + AluJo SINE Alu 1 278 -34 207 0 0 0 chr3 65915949 65915972 -152121186 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 417 144 56 0 chr3 65915993 65916083 -152121075 - LTR23-int LTR ERV1 -2471 2652 2558 1855 116 4 36 chr3 65916144 65916420 -152120738 - AluSx SINE Alu -12 300 34 2284 60 49 7 chr3 65916511 65916796 -152120362 - AluY SINE Alu -14 297 1 529 197 28 79 chr3 65916812 65916891 -152120267 - LTR23-int LTR ERV1 -2000 3591 3510 2146 56 11 11 chr3 65916891 65917201 -152119957 - AluY SINE Alu 0 310 1 529 197 28 79 chr3 65917201 65917428 -152119730 - LTR23-int LTR ERV1 -2081 3510 1921 1868 157 30 0 chr3 65917594 65917935 -152119223 + AluSc SINE Alu 1 350 0 1421 127 16 0 chr3 65917935 65918179 -152118979 + L1MA2 LINE L1 6057 6304 0 1160 120 6 0 chr3 65918202 65918360 -152118798 + FRAM SINE Alu 1 155 -21 235 148 0 37 chr3 65918361 65918415 -152118743 + L1MC4 LINE L1 6652 6703 -1339 623 143 0 0 chr3 65919093 65919191 -152117967 + AluSg SINE Alu 1 98 -212 2358 78 10 0 chr3 65919534 65919828 -152117330 - AluSg SINE Alu -13 297 1 958 114 8 0 chr3 65919831 65919963 -152117195 - AluSq/x SINE Alu -179 133 1 21 0 0 0 chr3 65920036 65920057 -152117101 + AT_rich Low_complexity Low_complexity 1 21 0 1028 185 0 0 chr3 65920090 65920269 -152116889 + FAM SINE Alu 1 43 0 180 0 0 0 chr3 65920353 65920373 -152116785 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1201 162 66 0 chr3 65920378 65920650 -152116508 - AluSc SINE Alu -7 292 3 280 118 20 0 chr3 65920849 65920900 -152116258 + Alu SINE Alu 249 300 0 299 304 125 27 chr3 65921025 65921209 -152115949 + L2 LINE L2 2735 2936 -378 2350 93 0 3 chr3 65921209 65921509 -152115649 - AluSq SINE Alu -13 300 2 237 244 18 48 chr3 65921646 65921814 -152115344 + CT-rich Low_complexity Low_complexity 3 165 0 519 295 121 31 chr3 66022697 66023019 -152014139 + Charlie7 DNA MER1_type 5 355 -2257 608 216 170 14 chr3 66023025 66023243 -152013915 + Charlie7 DNA MER1_type 1498 1749 -863 603 136 11 0 chr3 66024459 66024547 -152012611 + FRAM SINE Alu 76 164 -12 24 32 0 0 chr3 66024573 66024604 -152012554 + AT_rich Low_complexity Low_complexity 1 31 0 1838 161 3 3 chr3 66024608 66024913 -152012245 - AluJb SINE Alu -7 305 1 773 163 0 0 chr3 66027469 66027592 -152009566 + AluJb SINE Alu 176 298 -14 741 206 8 0 chr3 66027592 66027718 -152009440 - MER82 DNA MER2_type -526 127 1 569 99 0 11 chr3 66027718 66027809 -152009349 + (CATATA)n Simple_repeat Simple_repeat 5 94 0 197 274 48 0 chr3 66027950 66028012 -152009146 - L2 LINE L2 0 3313 3249 616 222 60 49 chr3 66028189 66028374 -152008784 - MIR3 SINE MIR -3 205 19 1722 137 28 11 chr3 66028541 66028825 -152008333 - AluJb SINE Alu -23 289 1 201 39 0 0 chr3 66028828 66028854 -152008304 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 687 263 116 19 chr3 66029536 66029856 -152007302 + MER113 DNA MER1_type? 82 432 -89 940 266 31 40 chr3 66029992 66030099 -152007059 + LTR16C LTR ERVL 164 270 -221 2266 86 3 0 chr3 66030099 66030403 -152006755 - AluSc SINE Alu -4 305 1 940 266 31 40 chr3 66030403 66030622 -152006536 + LTR16C LTR ERVL 270 487 -4 2068 126 0 3 chr3 66031681 66031991 -152005167 - AluSg SINE Alu -1 309 1 2246 89 0 0 chr3 66032270 66032573 -152004585 + AluY SINE Alu 1 303 -8 368 306 105 40 chr3 66032770 66033169 -152003989 - L2 LINE L2 -537 2777 2353 198 280 0 0 chr3 66033633 66033683 -152003475 - MIR SINE MIR -164 98 49 2181 92 17 0 chr3 66033758 66034051 -152003107 + AluSx SINE Alu 1 298 -14 22 0 0 0 chr3 66035353 66035375 -152001783 + AT_rich Low_complexity Low_complexity 1 22 0 502 279 118 10 chr3 66035743 66035947 -152001211 + MLT1L LTR MaLR 363 588 -27 872 194 18 35 chr3 66036042 66036212 -152000946 - FAM SINE Alu -7 168 2 2034 113 3 3 chr3 66036269 66036560 -152000598 + AluJb SINE Alu 15 305 -7 418 300 156 33 chr3 66036745 66037187 -151999971 - L2 LINE L2 -22 3291 2762 418 246 23 54 chr3 66037187 66037317 -151999841 - Charlie4 DNA MER1_type 0 1961 1836 545 212 43 92 chr3 66037366 66037452 -151999706 - MER97c DNA MER1_type? -911 179 105 1991 75 75 7 chr3 66037452 66037732 -151999426 - AluY SINE Alu -12 299 1 545 212 43 92 chr3 66037732 66037829 -151999329 - MER97c DNA MER1_type? -985 105 5 1943 126 3 30 chr3 66037829 66038131 -151999027 - AluSx SINE Alu -18 294 1 329 259 109 71 chr3 66038258 66038497 -151998661 - L1M4 LINE L1 -932 5214 4967 24 0 0 0 chr3 66038496 66038520 -151998638 + AT_rich Low_complexity Low_complexity 1 24 0 * 1288 289 69 56 chr3 66039096 66039663 -151997495 - MLT1K LTR MaLR 0 588 15 759 302 22 4 chr3 66040211 66040443 -151996715 - MIR SINE MIR -10 252 17 459 339 82 5 chr3 66040848 66041043 -151996115 + MIR SINE MIR 13 222 -40 205 279 0 0 chr3 66041434 66041495 -151995663 + T-rich Low_complexity Low_complexity 1 61 0 1301 144 0 10 chr3 66041595 66041803 -151995355 + AluSg/x SINE Alu 106 311 -1 2257 116 3 0 chr3 66042161 66042464 -151994694 - AluSx SINE Alu -8 304 1 746 270 22 0 chr3 66043223 66043401 -151993757 - MIR SINE MIR -80 182 1 208 261 17 17 chr3 66043412 66043531 -151993627 + (ATGGTG)n Simple_repeat Simple_repeat 4 122 0 895 289 63 42 chr3 66043625 66044378 -151992780 + L2 LINE L2 2544 3308 -5 227 272 233 29 chr3 66044421 66044524 -151992634 - MIR SINE MIR -137 125 2 932 245 10 0 chr3 66044660 66044852 -151992306 - MER58A DNA MER1_type -3 221 28 554 169 0 0 chr3 66045569 66045658 -151991500 - LTR23 LTR ERV1 -28 409 321 3943 157 73 45 chr3 66045844 66046641 -151990517 - L1MB5 LINE L1 -8 6166 5348 285 247 123 15 chr3 66046725 66046888 -151990270 - L1ME2 LINE L1 -284 5880 5703 1962 121 0 4 chr3 66047176 66047440 -151989718 - AluSg SINE Alu -47 263 1 380 169 70 0 chr3 66047440 66047511 -151989647 + L1MB5 LINE L1 6092 6167 -7 373 262 151 47 chr3 66047818 66047990 -151989168 + MIR SINE MIR 29 218 -44 383 247 279 5 chr3 66048053 66048243 -151988915 + MIR SINE MIR 7 248 -14 422 284 114 91 chr3 66048784 66049451 -151987707 - L2 LINE L2 -5 3267 2556 632 261 74 36 chr3 66050107 66050403 -151986755 + L1ME4a LINE L1 5600 5912 -209 1820 158 28 3 chr3 66050403 66050694 -151986464 - AluJb SINE Alu -14 298 1 632 261 74 36 chr3 66050694 66050734 -151986424 + L1ME4a LINE L1 5912 5949 -172 2246 99 3 10 chr3 66052545 66052711 -151984447 - AluSx SINE Alu -12 300 135 2061 145 0 0 chr3 66052711 66053007 -151984151 - AluSx SINE Alu -16 296 1 2246 99 3 10 chr3 66053007 66053142 -151984016 - AluSx SINE Alu -177 135 1 392 316 90 7 chr3 66053191 66053346 -151983812 - MIR3 SINE MIR -2 206 39 415 283 166 83 chr3 66053447 66054097 -151983061 + L2 LINE L2 2580 3272 0 713 205 58 7 chr3 66055068 66055328 -151981830 + MLT1A1 LTR MaLR 1 365 0 1096 161 0 6 chr3 66055408 66055597 -151981561 + AluJb SINE Alu 120 307 0 2075 129 3 0 chr3 66056179 66056473 -151980685 + AluSx SINE Alu 1 295 -17 3891 223 71 64 chr3 66056489 66056510 -151980648 + L1MC4 LINE L1 6604 6623 -1419 1938 145 10 3 chr3 66056510 66056820 -151980338 + AluJo SINE Alu 1 312 0 2364 80 0 20 chr3 66056823 66057122 -151980036 + AluSc SINE Alu 1 293 -16 3891 223 71 64 chr3 66057122 66058524 -151978634 + L1MC4 LINE L1 6624 8040 -2 2252 92 0 0 chr3 66058925 66059234 -151977924 + AluY SINE Alu 1 309 0 31 0 0 0 chr3 66060025 66060056 -151977102 + AT_rich Low_complexity Low_complexity 1 31 0 757 181 0 0 chr3 66060063 66060179 -151976979 - FLAM_C SINE Alu -26 117 2 526 290 8 0 chr3 66060329 66060453 -151976705 - L2 LINE L2 -1 3271 3147 510 258 24 0 chr3 66060480 66060604 -151976554 - LTR16C LTR ERVL -213 278 152 197 195 134 49 chr3 66060923 66061005 -151976153 + MIR SINE MIR 22 110 -98 778 258 74 4 chr3 66061029 66061273 -151975885 + MIR SINE MIR 2 262 0 291 137 232 32 chr3 66061312 66061407 -151975751 + MER113 DNA MER1_type? 1 114 -407 317 188 87 65 chr3 66061943 66062070 -151975088 - MLT1G LTR MaLR -1 589 269 255 343 0 0 chr3 66062106 66062176 -151974982 - MLT1G LTR MaLR -320 229 160 212 307 40 0 chr3 66062255 66062330 -151974828 - L2 LINE L2 0 3272 3195 219 286 0 0 chr3 66062366 66062422 -151974736 + L2 LINE L2 3251 3306 -7 893 125 1 1 chr3 66063133 66063275 -151973883 - L1P5 LINE L1 -435 5719 5578 181 396 57 0 chr3 66063281 66063387 -151973771 - MIR3 SINE MIR -54 154 43 4406 80 4 0 chr3 66064048 66064601 -151972557 - L1PA13 LINE L1 -16 6147 5593 2365 216 20 2 chr3 66064714 66065159 -151971999 + MER82 DNA MER2_type 195 647 -6 893 246 17 0 chr3 66065384 66065559 -151971599 - MER45A DNA AcHobo 0 178 1 204 40 0 0 chr3 66065908 66065933 -151971225 + (CA)n Simple_repeat Simple_repeat 2 26 0 391 317 131 14 chr3 66066037 66066350 -151970808 + L1ME LINE L1 5407 5767 -395 1415 197 65 43 chr3 66066587 66066721 -151970437 - Charlie1 DNA MER1_type 0 2761 2631 1644 141 24 54 chr3 66066721 66066884 -151970274 - AluJo SINE Alu -23 289 138 1735 166 7 10 chr3 66066884 66067173 -151969985 - AluJb SINE Alu -24 288 1 1644 141 24 54 chr3 66067173 66067307 -151969851 - AluJo SINE Alu -174 138 1 1415 197 65 43 chr3 66067307 66067542 -151969616 - Charlie1 DNA MER1_type -130 2631 2384 309 196 71 0 chr3 66067582 66067638 -151969520 - Charlie1 DNA MER1_type -2700 61 2 287 311 0 58 chr3 66067880 66067983 -151969175 + L2 LINE L2 2963 3059 -213 519 324 107 16 chr3 66068217 66068526 -151968632 - L1MC4a LINE L1 -1934 5874 5538 12444 107 18 17 chr3 66068626 66068977 -151968181 - Tigger1 DNA MER2_type -601 1817 1468 1863 119 15 0 chr3 66068977 66069246 -151967912 - AluSx SINE Alu -3 309 37 2166 115 3 0 chr3 66069249 66069544 -151967614 - AluSx SINE Alu -16 296 1 12444 107 18 17 chr3 66069544 66071003 -151966155 - Tigger1 DNA MER2_type -951 1467 1 589 288 87 13 chr3 66071019 66071248 -151965910 - MIR SINE MIR 0 262 17 2079 132 0 0 chr3 66071669 66071956 -151965202 + AluSx SINE Alu 1 287 -25 285 150 0 0 chr3 66072893 66072933 -151964225 - MLT1K LTR MaLR -20 568 529 312 263 42 25 chr3 66073114 66073232 -151963926 - MLT1K LTR MaLR -289 299 180 23 0 0 0 chr3 66073735 66073758 -151963400 + AT_rich Low_complexity Low_complexity 1 23 0 623 274 117 37 chr3 66075642 66076044 -151961114 - L1MC4 LINE L1 0 8042 7609 250 254 24 35 chr3 66076041 66076158 -151961000 - L1MC4 LINE L1 -375 7667 7550 * 2005 139 3 0 chr3 66076158 66076446 -151960712 + AluJo SINE Alu 1 289 -23 250 254 24 35 chr3 66076446 66076582 -151960576 - L1MC4 LINE L1 -492 7550 7315 832 149 15 0 chr3 66076827 66076961 -151960197 + FRAM SINE Alu 27 162 -14 324 158 0 0 chr3 66076962 66077019 -151960139 + (TA)n Simple_repeat Simple_repeat 1 57 0 210 150 0 0 chr3 66077102 66077142 -151960016 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 257 218 172 0 chr3 66077214 66077301 -151959857 - MIR3 SINE MIR -18 190 89 644 294 97 21 chr3 66077443 66077681 -151959477 + MIR SINE MIR 6 261 -1 1796 149 3 44 chr3 66077872 66078193 -151958965 + AluJo SINE Alu 5 312 0 3240 144 3 25 chr3 66078203 66078698 -151958460 + L1MB3 LINE L1 5178 5659 -524 4324 112 18 0 chr3 66078698 66079297 -151957861 + L1PB1 LINE L1 5539 6148 -3 3240 144 3 25 chr3 66079297 66079423 -151957735 + L1MB3 LINE L1 5659 5786 -397 2480 123 33 3 chr3 66079658 66080047 -151957111 + L1MB3 LINE L1 5783 6183 0 1798 161 3 40 chr3 66080186 66080508 -151956650 + AluJb SINE Alu 1 310 -2 22 0 0 0 chr3 66082309 66082331 -151954827 + AT_rich Low_complexity Low_complexity 1 22 0 997 147 85 17 chr3 66082769 66082946 -151954212 + AluSc SINE Alu 115 303 -6 198 0 0 0 chr3 66083340 66083362 -151953796 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 2297 82 0 10 chr3 66083364 66083655 -151953503 - AluSx SINE Alu -24 288 1 2084 148 0 3 chr3 66084823 66085121 -151952037 + AluJb SINE Alu 1 297 -15 1962 142 0 30 chr3 66087027 66087330 -151949828 + AluJo SINE Alu 1 294 -18 185 0 0 39 chr3 66087524 66087550 -151949608 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 1147 167 20 0 chr3 66087600 66087798 -151949360 + L1MD3 LINE L1 7793 7994 -1 249 282 71 12 chr3 66088539 66088624 -151948534 - MIR3 SINE MIR -7 201 112 579 236 128 57 chr3 66089441 66089658 -151947500 - L2 LINE L2 -2 3311 3065 1926 154 7 0 chr3 66089658 66089971 -151947187 - AluJb SINE Alu 0 315 1 579 236 128 57 chr3 66089971 66090048 -151947110 - L2 LINE L2 -248 3065 2995 2322 98 0 13 chr3 66090547 66090863 -151946295 - AluSx SINE Alu 0 312 1 29 0 0 0 chr3 66092161 66092190 -151944968 + AT_rich Low_complexity Low_complexity 1 29 0 275 289 8 25 chr3 66092297 66092418 -151944740 + L1ME2 LINE L1 5706 5824 -1984 3430 164 5 14 chr3 66092428 66093006 -151944152 + L1MC1 LINE L1 5753 6325 -8 413 216 93 0 chr3 66093007 66093104 -151944054 + MER41D LTR ERV1 361 466 -91 181 0 0 65 chr3 66093638 66093669 -151943489 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1517 225 54 27 chr3 66093978 66094423 -151942735 + Charlie4a DNA MER1_type 18 474 -34 281 251 37 3 chr3 66094608 66094712 -151942446 - L1ME LINE L1 -344 5777 5668 2095 129 3 0 chr3 66094713 66095008 -151942150 - AluSg SINE Alu -14 296 1 192 227 114 0 chr3 66095141 66095185 -151941973 - MIR SINE MIR -22 240 192 1042 177 0 21 chr3 66095185 66095377 -151941781 - AluJ SINE Alu -2 310 123 2548 67 39 25 chr3 66095426 66095782 -151941376 - L1PA13 LINE L1 0 6163 5803 871 131 0 0 chr3 66095787 66095909 -151941249 - AluJ SINE Alu -189 123 2 354 197 41 16 chr3 66095909 66096002 -151941156 - MIR SINE MIR -61 201 107 901 209 0 6 chr3 66096953 66097116 -151940042 - AluJo SINE Alu -150 162 1 238 24 71 24 chr3 66097117 66097159 -151939999 + T-rich Low_complexity Low_complexity 4 47 0 1228 142 46 14 chr3 66097177 66097395 -151939763 - AluJb SINE Alu -2 310 86 351 243 86 78 chr3 66097605 66097848 -151939310 - L1MC4a LINE L1 -1875 5933 5689 667 238 0 7 chr3 66098029 66098180 -151938978 + L1ME2 LINE L1 6004 6153 -11 193 29 29 29 chr3 66098195 66098230 -151938928 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 302 308 8 0 chr3 66099021 66099151 -151938007 + CT-rich Low_complexity Low_complexity 2 132 0 21 71 0 0 chr3 66101572 66101614 -151935544 + AT_rich Low_complexity Low_complexity 1 42 0 180 0 0 0 chr3 66102081 66102101 -151935057 + (A)n Simple_repeat Simple_repeat 1 20 0 205 358 109 0 chr3 66102600 66102706 -151934452 - MIR SINE MIR -60 148 40 304 306 111 12 chr3 66103005 66103170 -151933988 - MIR SINE MIR -55 207 33 1889 155 3 26 chr3 66104267 66104576 -151932582 - AluJb SINE Alu -10 302 1 275 300 41 77 chr3 66104952 66105122 -151932036 + MIR SINE MIR 68 231 -31 25 31 0 0 chr3 66105511 66105543 -151931615 + AT_rich Low_complexity Low_complexity 1 32 0 2421 214 67 31 chr3 66105803 66106374 -151930784 + MLT1E LTR MaLR 3 593 0 205 352 66 11 chr3 66106876 66106967 -151930191 + L2 LINE L2 3145 3240 -32 385 97 111 14 chr3 66107486 66107558 -151929600 - L1PB4 LINE L1 0 6156 6078 265 241 19 0 chr3 66107994 66108048 -151929110 + L2 LINE L2 3218 3272 0 * 422 203 16 89 chr3 66108045 66108168 -151928990 - MIR SINE MIR -74 134 21 2160 136 0 0 chr3 66108579 66108889 -151928269 - AluSq SINE Alu -3 310 1 211 379 10 0 chr3 66108922 66109025 -151928133 - L2 LINE L2 -30 3242 3139 360 268 74 32 chr3 66109152 66109342 -151927816 + L1MC5 LINE L1 7732 7929 -32 478 291 18 50 chr3 66109350 66109570 -151927588 + MIR SINE MIR 50 262 0 2072 131 0 7 chr3 66109675 66109980 -151927178 - AluSq SINE Alu -10 303 1 21 0 0 0 chr3 66110303 66110324 -151926834 + AT_rich Low_complexity Low_complexity 1 21 0 384 292 0 8 chr3 66110434 66110554 -151926604 + MIR SINE MIR 89 207 -55 2018 128 0 0 chr3 66111262 66111536 -151925622 + AluSx SINE Alu 3 276 -36 207 0 0 0 chr3 66111542 66111565 -151925593 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 247 286 143 0 chr3 66111685 66111790 -151925368 - L2 LINE L2 -4 3309 3190 1024 221 17 25 chr3 66111812 66112047 -151925111 - MIR SINE MIR -14 248 16 881 314 13 0 chr3 66112727 66112956 -151924202 - MIR SINE MIR -2 260 29 788 162 0 0 chr3 66113200 66113317 -151923841 + FLAM_C SINE Alu 2 118 -25 24 32 0 0 chr3 66113317 66113348 -151923810 + AT_rich Low_complexity Low_complexity 1 31 0 210 305 105 11 chr3 66114067 66114162 -151922996 - MIR SINE MIR 0 262 159 437 193 11 23 chr3 66114181 66114269 -151922889 + L2 LINE L2 3226 3312 -1 244 253 80 13 chr3 66114257 66114332 -151922826 - MIR SINE MIR -131 131 52 * 2222 103 0 0 chr3 66114426 66114737 -151922421 - AluSx SINE Alu 0 311 1 475 237 40 49 chr3 66114839 66115068 -151922090 + MIR SINE MIR 17 245 -17 2377 106 0 0 chr3 66115585 66115896 -151921262 - AluSq SINE Alu -2 311 1 241 270 220 0 chr3 66116991 66117091 -151920067 - MIR SINE MIR -12 250 129 341 280 89 25 chr3 66117216 66117373 -151919785 - MER117 DNA MER1_type -26 171 5 935 273 12 24 chr3 66117589 66117838 -151919320 + MIR SINE MIR 1 246 -16 329 229 76 59 chr3 66118236 66118354 -151918804 - L2 LINE L2 -35 3278 3159 234 366 12 0 chr3 66118471 66118553 -151918605 + L2 LINE L2 3170 3252 -20 238 270 220 0 chr3 66119130 66119230 -151917928 - MIR SINE MIR -12 250 129 356 274 89 25 chr3 66119355 66119512 -151917646 - MER117 DNA MER1_type -26 171 5 278 307 109 10 chr3 66119545 66119646 -151917512 + MIR SINE MIR 33 143 -65 339 277 31 15 chr3 66119882 66120012 -151917146 - MER5A DNA MER1_type -28 161 30 261 237 52 52 chr3 66120131 66120228 -151916930 + L2 LINE L2 2968 3064 -208 317 247 58 92 chr3 66120232 66120406 -151916752 - MIR SINE MIR -6 256 89 * 334 374 121 11 chr3 66120389 66120571 -151916587 + L2 LINE L2 3070 3271 -1 2114 133 10 0 chr3 66120920 66121220 -151915938 + AluJb SINE Alu 1 303 -9 198 264 57 0 chr3 66121339 66121392 -151915766 + L3 LINE CR1 1517 1572 -5 2407 87 0 16 chr3 66121700 66122011 -151915147 + AluSg SINE Alu 1 306 -4 437 284 142 18 chr3 66122632 66122850 -151914308 + MIR SINE MIR 8 252 -10 405 309 27 0 chr3 66123251 66123361 -151913797 + MIR SINE MIR 33 145 -63 324 278 9 43 chr3 66123820 66123935 -151913223 - MIR3 SINE MIR -7 201 91 195 292 21 0 chr3 66125049 66125097 -151912061 + L2 LINE L2 3255 3303 -10 1682 93 4 4 chr3 66125227 66125453 -151911705 - Charlie3 DNA MER1_type -4 2706 2481 1808 149 42 3 chr3 66126630 66126918 -151910240 - AluSx SINE Alu -13 299 1 537 263 201 6 chr3 66127172 66127351 -151909807 + MIR SINE MIR 21 234 -28 1983 109 3 18 chr3 66127426 66127442 -151909716 - AluSx SINE Alu -18 294 279 711 54 0 0 chr3 66127442 66127534 -151909624 + (TTCTC)n Simple_repeat Simple_repeat 1 92 0 1983 109 3 18 chr3 66127534 66127802 -151909356 - AluSx SINE Alu -33 279 14 542 243 71 131 chr3 66128127 66128312 -151908846 - L1MC5 LINE L1 -61 7900 7705 1654 121 49 69 chr3 66128312 66128618 -151908540 - AluJb SINE Alu -4 308 9 542 243 71 131 chr3 66128618 66128843 -151908315 - L1MC5 LINE L1 -256 7705 7537 777 206 8 8 chr3 66128843 66128974 -151908184 - FLAM_A SINE Alu -2 131 1 542 243 71 131 chr3 66128974 66129180 -151907978 - L1MC5 LINE L1 -424 7537 7320 1801 168 32 0 chr3 66129387 66129672 -151907486 + AluJb SINE Alu 1 294 -18 1988 134 7 36 chr3 66129678 66129985 -151907173 + AluJo SINE Alu 3 300 -12 182 360 25 62 chr3 66130013 66130174 -151906984 - L2 LINE L2 -162 3110 2956 301 224 30 0 chr3 66130279 66130346 -151906812 - L2 LINE L2 -1 3312 3244 188 280 20 0 chr3 66131264 66131314 -151905844 - L3 LINE CR1 -2 1575 1525 296 298 50 16 chr3 66131492 66131613 -151905545 - MIR3 SINE MIR -81 127 3 713 271 92 9 chr3 66131685 66131903 -151905255 + MIR SINE MIR 4 239 -23 406 213 43 0 chr3 66132258 66132352 -151904806 - MIR SINE MIR -70 192 95 850 240 82 0 chr3 66132701 66132897 -151904261 + MIR SINE MIR 29 240 -22 331 309 111 8 chr3 66132915 66133041 -151904117 - L2 LINE L2 -18 3254 3116 1735 199 0 3 chr3 66133264 66133565 -151903593 - AluJo SINE Alu -12 300 1 290 324 41 48 chr3 66134223 66134324 -151902834 - MIR3 SINE MIR -57 151 50 1839 156 0 52 chr3 66134324 66134650 -151902508 - AluJo SINE Alu -3 309 1 290 324 41 48 chr3 66134650 66134693 -151902465 - MIR3 SINE MIR -158 50 8 383 319 17 0 chr3 66134967 66135083 -151902075 - MIR SINE MIR -114 148 31 1690 86 45 9 chr3 66135083 66135305 -151901853 + MER30 DNA MER1_type 1 230 0 542 257 126 42 chr3 66137391 66137652 -151899506 - L2 LINE L2 -5 3267 2985 240 191 34 79 chr3 66138131 66138220 -151898938 - L3 LINE CR1 -663 914 830 222 232 36 18 chr3 66138397 66138453 -151898705 + L2 LINE L2 3216 3272 0 204 371 11 34 chr3 66138649 66138738 -151898420 - MER5A DNA MER1_type -55 134 48 307 220 98 23 chr3 66138843 66138939 -151898219 + MER104 DNA Tc2 1 88 -1810 216 0 0 0 chr3 66138939 66138963 -151898195 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1539 167 67 4 chr3 66138965 66139235 -151897923 - AluJb SINE Alu -25 287 1 307 220 98 23 chr3 66139235 66139267 -151897891 + MER104 DNA Tc2 88 142 -38 373 217 137 19 chr3 66139267 66139296 -151897862 + MER104 DNA MER2_type 1 180 0 30 36 0 18 chr3 66139446 66139469 -151897689 + AT_rich Low_complexity Low_complexity 1 23 -31 2126 131 16 0 chr3 66139469 66139775 -151897383 + AluSx SINE Alu 1 311 -1 30 36 0 18 chr3 66139775 66139806 -151897352 + AT_rich Low_complexity Low_complexity 23 54 0 1031 232 9 14 chr3 66140546 66140766 -151896392 - MER20 DNA MER1_type 0 219 1 21 57 0 0 chr3 66140821 66140856 -151896302 + AT_rich Low_complexity Low_complexity 1 35 0 1842 145 0 43 chr3 66140873 66141197 -151895961 - AluJo SINE Alu -2 310 1 2443 90 0 0 chr3 66141356 66141655 -151895503 - AluSx SINE Alu -13 299 1 2237 95 3 7 chr3 66142311 66142606 -151894552 + AluSx SINE Alu 1 294 -18 348 26 0 0 chr3 66143405 66143444 -151893714 + HERV9 LTR ERV1 4554 4592 -3807 1352 95 0 0 chr3 66143963 66144131 -151893027 - AluSx SINE Alu -144 168 1 2328 96 3 10 chr3 66144734 66144869 -151892289 + AluSq SINE Alu 1 135 -178 2611 47 0 0 chr3 66144869 66145166 -151891992 + AluY SINE Alu 2 298 -13 2328 96 3 10 chr3 66145166 66145344 -151891814 + AluSq SINE Alu 135 312 -1 848 132 0 23 chr3 66145388 66145517 -151891641 + FLAM_C SINE Alu 5 130 -3 445 276 19 4 chr3 66145722 66145865 -151891293 - MIR SINE MIR -62 146 12 1004 132 14 0 chr3 66146189 66146377 -151890781 - AluSg/x SINE Alu 0 326 137 292 198 0 58 chr3 66146458 66146544 -151890614 + T-rich Low_complexity Low_complexity 1 81 0 1669 127 0 124 chr3 66146894 66147216 -151889942 - AluJb SINE Alu -30 282 1 609 176 99 2 chr3 66148383 66148661 -151888497 - MER113 DNA MER1_type? -109 412 44 416 308 130 5 chr3 66149054 66149239 -151887919 + MIR SINE MIR 5 212 -50 441 0 0 0 chr3 66149267 66149316 -151887842 + (CAG)n Simple_repeat Simple_repeat 2 50 0 382 248 106 14 chr3 66150439 66150580 -151886578 + MIR SINE MIR 81 234 -28 23 0 0 0 chr3 66150595 66150618 -151886540 + AT_rich Low_complexity Low_complexity 1 23 0 291 266 8 81 chr3 66150674 66150798 -151886360 + MIR SINE MIR 38 152 -56 301 243 48 19 chr3 66153397 66153500 -151883658 - MIR SINE MIR -70 192 87 343 143 125 0 chr3 66154008 66154064 -151883094 + L1MC4 LINE L1 7445 7507 -535 2387 167 52 81 chr3 66156630 66156679 -151880479 + L1MD3 LINE L1 7404 7453 -542 1656 205 52 50 chr3 66156679 66156793 -151880365 - MLT1C LTR MaLR 0 467 355 2352 107 7 0 chr3 66156793 66157102 -151880056 + AluSx SINE Alu 1 311 -1 1656 205 52 50 chr3 66157102 66157451 -151879707 - MLT1C LTR MaLR -112 355 3 2387 167 52 81 chr3 66157451 66157995 -151879163 + L1MD3 LINE L1 7453 7980 -15 377 340 58 5 chr3 66158225 66158413 -151878745 + MIR SINE MIR 51 248 -14 257 197 211 0 chr3 66158456 66158532 -151878626 - MIR SINE MIR -110 152 61 934 51 0 0 chr3 66158740 66158858 -151878300 + AluY SINE Alu 194 311 0 368 246 36 18 chr3 66158948 66159058 -151878100 - L1MC5 LINE L1 -107 7854 7743 810 243 104 27 chr3 66159388 66159503 -151877655 + MER58 DNA MER1_type 6 111 -230 1757 155 3 14 chr3 66159503 66159794 -151877364 + AluJb SINE Alu 1 288 -24 810 243 104 27 chr3 66159794 66159937 -151877221 + MER58 DNA MER1_type 111 284 -57 669 282 66 0 chr3 66159968 66160195 -151876963 + MIR SINE MIR 21 262 0 206 239 0 45 chr3 66160991 66161058 -151876100 + CT-rich Low_complexity Low_complexity 3 66 0 639 323 50 0 chr3 66161063 66161385 -151875773 + L1M4 LINE L1 3899 4236 -1910 300 91 0 0 chr3 66162517 66162561 -151874597 + (TG)n Simple_repeat Simple_repeat 2 45 0 1952 104 42 7 chr3 66163402 66163719 -151873439 - AluSg1 SINE Alu 0 309 1 23 0 0 0 chr3 66163930 66163953 -151873205 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr3 66164015 66164044 -151873114 + AT_rich Low_complexity Low_complexity 1 29 0 1725 194 27 0 chr3 66164987 66165316 -151871842 + MER58B DNA MER1_type 4 341 0 195 298 213 11 chr3 66165335 66165429 -151871729 + MIR SINE MIR 28 140 -122 180 333 12 12 chr3 66165513 66165597 -151871561 + MIR SINE MIR 164 247 -15 2085 94 0 4 chr3 66167210 66167476 -151869682 - AluSq SINE Alu -15 298 34 369 86 0 0 chr3 66167869 66167927 -151869231 + (TTTAA)n Simple_repeat Simple_repeat 3 60 0 2058 111 11 0 chr3 66167929 66168208 -151868950 - AluSx SINE Alu -30 282 1 359 326 11 37 chr3 66169439 66169629 -151867529 - L1M4 LINE L1 -3596 2550 2366 2160 111 0 7 chr3 66169980 66170269 -151866889 + AluSx SINE Alu 1 287 -25 2044 124 7 3 chr3 66170291 66170596 -151866562 + AluSx SINE Alu 1 306 0 2428 94 3 0 chr3 66170820 66171129 -151866029 - AluSx SINE Alu -2 310 1 551 167 158 25 chr3 66171129 66171240 -151865918 - FLAM_C SINE Alu -181 131 2 936 259 48 21 chr3 66171242 66171559 -151865599 - L1MEc LINE L1 -3553 2662 2355 261 0 0 0 chr3 66171559 66171588 -151865570 + (TG)n Simple_repeat Simple_repeat 2 30 0 2258 107 0 3 chr3 66171592 66171883 -151865275 - AluSx SINE Alu -20 292 3 936 259 48 21 chr3 66171883 66171935 -151865223 - L1MEc LINE L1 -3862 2353 2278 1278 236 3 0 chr3 66171936 66172220 -151864938 - AluSc SINE Alu -3 306 22 2457 76 0 10 chr3 66172707 66173021 -151864137 - AluSq SINE Alu 0 313 3 692 207 22 73 chr3 66173028 66173074 -151864084 - L1MEc LINE L1 -4033 2363 2316 2304 109 3 0 chr3 66173074 66173378 -151863780 - AluSc SINE Alu -4 305 1 692 207 22 73 chr3 66173378 66173563 -151863595 - L1MEc LINE L1 -4080 2316 2144 2149 91 49 0 chr3 66173565 66173851 -151863307 - AluSx SINE Alu -12 300 1 360 179 75 66 chr3 66173958 66174026 -151863132 + MIR SINE MIR 144 210 -52 2146 79 0 28 chr3 66174026 66174317 -151862841 + AluSc SINE Alu 1 283 -26 387 0 0 0 chr3 66174317 66174360 -151862798 + (CA)n Simple_repeat Simple_repeat 2 44 0 360 179 75 66 chr3 66174360 66174396 -151862762 + MIR SINE MIR 209 250 -12 2434 97 3 0 chr3 66174404 66174715 -151862443 + AluSx SINE Alu 1 312 0 1223 141 35 46 chr3 66174755 66175055 -151862103 - MLT1E3 LTR MaLR 0 624 281 2105 179 95 46 chr3 66175082 66175134 -151862024 - L1MB7 LINE L1 -20 6164 6116 2084 120 0 0 chr3 66175134 66175410 -151861748 + AluSx SINE Alu 1 276 -36 261 0 0 0 chr3 66175415 66175444 -151861714 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2105 179 95 46 chr3 66175444 66175619 -151861539 - L1MB7 LINE L1 -71 6113 5628 543 251 180 37 chr3 66175619 66175946 -151861212 - L1MC4a LINE L1 -1861 5947 5574 1305 125 5 0 chr3 66176049 66176233 -151860925 + AluSg/x SINE Alu 121 305 -5 1638 197 13 13 chr3 66176237 66176546 -151860612 + AluJo SINE Alu 1 309 -3 5601 185 90 48 chr3 66176548 66177815 -151859343 + L1MDb LINE L1 7 1218 -5191 1859 148 7 20 chr3 66177815 66178118 -151859040 + AluJb SINE Alu 5 303 -9 288 0 0 0 chr3 66178127 66178159 -151858999 + (TA)n Simple_repeat Simple_repeat 2 33 0 5601 185 90 48 chr3 66178159 66178186 -151858972 + L1MDb LINE L1 1225 1367 -5042 375 272 0 0 chr3 66178214 66178317 -151858841 + L1MD2 LINE L1 6139 6241 -118 2349 65 31 3 chr3 66178917 66179211 -151857947 - AluY SINE Alu -9 302 1 740 132 0 59 chr3 66179243 66179272 -151857886 - L1MB5 LINE L1 -9 6165 6136 1725 168 3 44 chr3 66179272 66179588 -151857570 - AluJo SINE Alu -9 303 1 740 132 0 59 chr3 66179588 66179694 -151857464 - L1MB5 LINE L1 -38 6136 6038 757 241 86 56 chr3 66179694 66180108 -151857050 - L1M2 LINE L1 -306 5815 5380 326 257 79 0 chr3 66180301 66180402 -151856756 - MIR SINE MIR -51 211 103 699 229 0 0 chr3 66180734 66180874 -151856284 + FLAM_C SINE Alu 3 142 -1 279 267 136 29 chr3 66181159 66181365 -151855793 + L2 LINE L2 3086 3313 0 325 252 189 7 chr3 66181370 66181513 -151855645 - MIR SINE MIR -24 238 70 2245 131 0 6 chr3 66181780 66182094 -151855064 - AluSx SINE Alu 0 312 1 1560 114 59 8 chr3 66182094 66182348 -151854810 + Tigger1 DNA MER2_type 1823 2089 -329 44589 43 1 2 chr3 66182348 66188507 -151848651 + L1PA4 LINE L1 2 6154 -1 1861 109 164 0 chr3 66188523 66188816 -151848342 + Tigger1 DNA MER2_type 2078 2418 0 21 36 0 0 chr3 66188823 66188851 -151848307 + AT_rich Low_complexity Low_complexity 1 28 0 390 318 9 9 chr3 66189069 66189176 -151847982 + MIR SINE MIR 15 121 -141 1436 187 113 50 chr3 66189178 66189558 -151847600 + MLT1E3 LTR MaLR 1 404 -220 806 234 120 41 chr3 66190982 66191298 -151845860 - MER102b DNA MER1_type 0 341 1 485 287 26 46 chr3 66191695 66191890 -151845268 - MIR SINE MIR -49 213 23 188 279 49 16 chr3 66192619 66192680 -151844478 - L3 LINE CR1 -7 1570 1508 2572 62 0 10 chr3 66192743 66193050 -151844108 + AluY SINE Alu 1 304 -7 743 170 7 22 chr3 66193056 66193191 -151843967 + FLAM_C SINE Alu 1 133 0 420 250 19 46 chr3 66194695 66194803 -151842355 + MIR SINE MIR 45 149 -113 1896 126 47 0 chr3 66194877 66194997 -151842161 + AluSx SINE Alu 3 116 -196 459 0 0 0 chr3 66194997 66195048 -151842110 + (TA)n Simple_repeat Simple_repeat 2 52 0 1896 126 47 0 chr3 66195048 66195204 -151841954 + AluSx SINE Alu 116 292 -20 21 0 0 0 chr3 66195278 66195299 -151841859 + AT_rich Low_complexity Low_complexity 1 21 0 4399 71 39 0 chr3 66196365 66196898 -151840260 - MER41A LTR ERV1 0 554 1 868 239 159 58 chr3 66196922 66197357 -151839801 + LTR67 LTR ERVL 33 511 -46 628 267 138 4 chr3 66197520 66197745 -151839413 - MIR SINE MIR 0 262 8 950 259 35 0 chr3 66199012 66199240 -151837918 + MIR SINE MIR 2 237 -25 29 70 0 0 chr3 66199410 66199467 -151837691 + AT_rich Low_complexity Low_complexity 1 57 0 349 336 21 7 chr3 66199650 66199738 -151837420 + MIR SINE MIR 25 117 -145 207 0 0 0 chr3 66199738 66199761 -151837397 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 349 336 21 7 chr3 66199761 66199815 -151837343 + MIR SINE MIR 117 169 -93 435 276 67 25 chr3 66199817 66200031 -151837127 - MIR SINE MIR -32 230 9 415 270 157 19 chr3 66200183 66200342 -151836816 - MIR SINE MIR -15 247 67 484 253 171 6 chr3 66201418 66201576 -151835582 - MER5A DNA MER1_type -1 188 5 2282 129 0 0 chr3 66203265 66203574 -151833584 + AluJb SINE Alu 1 309 -3 286 269 92 8 chr3 66204214 66204344 -151832814 - L1ME4a LINE L1 -13 6108 5968 710 294 82 22 chr3 66204366 66204768 -151832390 - L1ME4a LINE L1 -204 5917 5492 1686 162 6 29 chr3 66205372 66205687 -151831471 - AluJb SINE Alu 0 312 5 2253 144 29 27 chr3 66205748 66206122 -151831036 + THE1C LTR MaLR 1 375 0 4565 122 15 126 chr3 66206253 66207803 -151829355 + pTR5 LTR ERV1 741 2606 0 485 256 165 0 chr3 66207803 66207979 -151829179 - MIR SINE MIR -26 236 32 256 270 117 9 chr3 66208469 66208580 -151828578 + L1MC4 LINE L1 7373 7495 -547 2116 115 3 10 chr3 66208801 66208935 -151828223 + AluSq SINE Alu 1 134 -179 2272 89 17 3 chr3 66208935 66209237 -151827921 + AluSc SINE Alu 1 306 -3 2116 115 3 10 chr3 66209237 66209398 -151827760 + AluSq SINE Alu 134 294 -19 1751 132 77 7 chr3 66210190 66210462 -151826696 - AluSx SINE Alu -21 291 1 182 320 0 20 chr3 66211038 66211088 -151826070 + L2 LINE L2 3206 3254 -18 351 0 0 0 chr3 66211184 66211223 -151825935 + (TG)n Simple_repeat Simple_repeat 2 40 0 1406 90 11 0 chr3 66211961 66212166 -151824992 - AluSg/x SINE Alu 0 312 106 1425 159 8 36 chr3 66212617 66212869 -151824289 - L1PA16 LINE L1 -9 6157 5913 2438 97 0 0 chr3 66213202 66213510 -151823648 - AluSq SINE Alu -5 308 1 1998 106 9 75 chr3 66213720 66213904 -151823254 - AluSx SINE Alu -12 300 144 2397 95 0 0 chr3 66213904 66214210 -151822948 - AluY SINE Alu -5 306 1 1998 106 9 75 chr3 66214210 66214346 -151822812 - AluSx SINE Alu -168 144 1 480 273 160 10 chr3 66215055 66215249 -151821909 + MIR SINE MIR 20 242 -20 379 265 137 52 chr3 66215502 66215655 -151821503 - L2 LINE L2 -66 3247 3070 1945 149 20 0 chr3 66215655 66215957 -151821201 - AluSx SINE Alu -4 308 1 379 265 137 52 chr3 66215957 66216014 -151821144 - L2 LINE L2 -243 3070 3019 780 209 99 0 chr3 66216113 66216304 -151820854 - MIR SINE MIR 0 262 53 2128 106 41 10 chr3 66216532 66216824 -151820334 + AluSx SINE Alu 1 301 -11 183 381 67 9 chr3 66217024 66217129 -151820029 - MER5A DNA MER1_type -7 182 72 * 220 355 21 11 chr3 66217047 66217140 -151820018 + MER5A DNA MER1_type 47 140 -49 334 154 77 0 chr3 66217148 66217213 -151819945 - FLAM SINE Alu -2 131 62 2528 71 0 0 chr3 66220320 66220629 -151816529 - AluY SINE Alu -2 309 1 261 116 0 0 chr3 66220655 66220698 -151816460 - L1MB2 LINE L1 -14 6157 6115 1464 130 183 30 chr3 66220700 66220962 -151816196 - AluSx SINE Alu 0 302 1 2081 143 15 3 chr3 66221014 66221343 -151815815 - L1MB2 LINE L1 -57 6114 5782 460 314 101 70 chr3 66221419 66221995 -151815163 + L1MEc LINE L1 92 690 -5706 2445 101 0 0 chr3 66221995 66222302 -151814856 + AluSx SINE Alu 1 307 -5 460 314 101 70 chr3 66222302 66222350 -151814808 + L1MEc LINE L1 690 735 -5661 677 214 38 8 chr3 66222408 66222539 -151814619 - AluJb SINE Alu -58 254 120 1892 266 52 51 chr3 66222615 66223617 -151813541 + L1MEc LINE L1 788 1793 -4603 2437 85 3 0 chr3 66223617 66223922 -151813236 + AluSp SINE Alu 1 306 -7 1892 266 52 51 chr3 66223922 66224040 -151813118 + L1MEc LINE L1 1793 1909 -4487 732 150 66 75 chr3 66224147 66224185 -151812973 + L1ME LINE L1 1543 1580 -4816 2475 70 0 6 chr3 66224185 66224497 -151812661 + AluY SINE Alu 1 310 -1 732 150 66 75 chr3 66224497 66224639 -151812519 + L1ME LINE L1 1580 1723 -4673 1864 81 24 136 chr3 66224639 66224971 -151812187 + AluSg SINE Alu 1 295 -15 732 150 66 75 chr3 66224971 66225002 -151812156 + L1ME LINE L1 1723 1753 -4643 * 5345 198 62 35 chr3 66225000 66225913 -151811245 + L1ME LINE L1 3892 4779 -1456 2340 96 3 0 chr3 66225913 66226214 -151810944 + AluSp SINE Alu 1 302 -11 2336 93 0 7 chr3 66226224 66226525 -151810633 + AluSx SINE Alu 1 299 -13 5345 198 62 35 chr3 66226525 66227012 -151810146 + L1ME LINE L1 4787 5350 -885 2160 144 0 0 chr3 66227012 66227324 -151809834 + AluSx SINE Alu 1 312 0 5345 198 62 35 chr3 66227324 66227544 -151809614 + L1ME LINE L1 5350 5563 -672 4267 158 46 1 chr3 66227535 66228278 -151808880 + L1MB2 LINE L1 5368 6143 -28 * 951 94 0 0 chr3 66228282 66228409 -151808749 - AluSg/x SINE Alu -12 300 174 207 0 0 0 chr3 66228737 66228760 -151808398 + (A)n Simple_repeat Simple_repeat 1 23 0 1855 135 3 30 chr3 66228764 66229067 -151808091 + AluJo SINE Alu 11 305 -7 217 286 98 62 chr3 66229151 66229263 -151807895 + MIR SINE MIR 28 143 -119 2274 78 3 24 chr3 66229364 66229659 -151807499 - AluY SINE Alu -22 289 1 2345 94 0 7 chr3 66229713 66230012 -151807146 - AluSq SINE Alu -16 297 1 246 255 137 39 chr3 66230664 66230766 -151806392 + L2 LINE L2 3194 3305 -8 431 254 121 46 chr3 66231936 66232109 -151805049 - MIR SINE MIR -42 220 35 2245 109 0 3 chr3 66232713 66233016 -151804142 - AluSg SINE Alu -8 302 1 1960 69 0 8 chr3 66233180 66233427 -151803731 - AluY SINE Alu -66 245 1 688 237 59 82 chr3 66233438 66233564 -151803594 - L1ME4a LINE L1 -188 5933 5806 867 154 0 22 chr3 66233564 66233700 -151803458 - FLAM_C SINE Alu 0 133 1 688 237 59 82 chr3 66233700 66233927 -151803231 - L1ME4a LINE L1 -315 5806 5588 199 308 46 0 chr3 66234110 66234175 -151802983 + L2 LINE L2 3186 3253 -19 1692 52 5 0 chr3 66235343 66235536 -151801622 + MER107 DNA MER1_type 4 197 0 2272 90 7 3 chr3 66235671 66235971 -151801187 + AluSq SINE Alu 1 301 -12 459 305 95 5 chr3 66236012 66236202 -151800956 - MIR SINE MIR 0 262 56 846 172 0 14 chr3 66236853 66236998 -151800160 + FLAM_C SINE Alu 1 143 0 21 0 0 0 chr3 66236998 66237019 -151800139 + AT_rich Low_complexity Low_complexity 1 21 0 409 264 41 26 chr3 66237019 66237278 -151799880 - L1ME4a LINE L1 -70 6051 5705 550 282 141 5 chr3 66237447 66237660 -151799498 - MIR SINE MIR -5 257 16 2010 145 0 22 chr3 66238627 66238805 -151798353 - AluSx SINE Alu -1 311 142 2414 78 0 0 chr3 66238805 66239101 -151798057 - AluSg SINE Alu -14 296 1 2010 145 0 22 chr3 66239101 66239240 -151797918 - AluSx SINE Alu -170 142 1 1879 115 10 47 chr3 66239932 66240109 -151797049 - AluSx SINE Alu -2 310 147 2368 66 28 0 chr3 66240109 66240396 -151796762 - AluY SINE Alu -16 295 1 1879 115 10 47 chr3 66240396 66240514 -151796644 - AluSx SINE Alu -165 147 26 803 150 14 36 chr3 66240514 66240649 -151796509 - AluJb SINE Alu -180 132 1 21 0 0 0 chr3 66240663 66240684 -151796474 + AT_rich Low_complexity Low_complexity 1 21 0 628 169 65 16 chr3 66240892 66241016 -151796142 - FLAM_C SINE Alu -2 131 2 2076 108 25 0 chr3 66241254 66241533 -151795625 - AluSx SINE Alu -26 286 1 439 225 0 45 chr3 66242021 66242132 -151795026 + MIR SINE MIR 153 258 -4 21 0 0 0 chr3 66245270 66245291 -151791867 + AT_rich Low_complexity Low_complexity 1 21 0 779 230 135 0 chr3 66246018 66246240 -151790918 - MIR SINE MIR 0 262 11 1840 151 13 3 chr3 66247351 66247649 -151789509 - AluSx SINE Alu -11 301 1 252 342 108 0 chr3 66248301 66248412 -151788746 - L2 LINE L2 0 3313 3191 21 0 0 0 chr3 66248588 66248609 -151788549 + AT_rich Low_complexity Low_complexity 1 21 0 2186 120 0 3 chr3 66249101 66249410 -151787748 - AluSg SINE Alu -2 308 1 2092 123 3 19 chr3 66249499 66249815 -151787343 - AluSx SINE Alu -1 311 1 838 174 99 12 chr3 66249957 66250118 -151787040 + FRAM SINE Alu 1 168 -8 2408 75 0 13 chr3 66250941 66251247 -151785911 - AluY SINE Alu -9 302 1 2233 94 7 3 chr3 66251480 66251777 -151785381 - AluSx SINE Alu -14 298 1 229 188 130 0 chr3 66252556 66252625 -151784533 - L1MA10 LINE L1 -1 6333 6256 572 131 0 37 chr3 66252668 66252775 -151784383 - FLAM_C SINE Alu 0 143 41 2083 117 0 17 chr3 66252800 66253098 -151784060 - AluSx SINE Alu -18 294 2 235 300 56 22 chr3 66253395 66253485 -151783673 - MARNA DNA Mariner -419 167 75 2127 89 14 3 chr3 66254487 66254778 -151782380 - AluY SINE Alu -17 294 1 2026 120 0 11 chr3 66254809 66255093 -151782065 + AluSx SINE Alu 1 281 -31 482 236 94 16 chr3 66255152 66255279 -151781879 + MER5B DNA MER1_type 38 174 -4 1371 216 55 14 chr3 66255284 66255575 -151781583 - AluJo SINE Alu -9 303 1 330 200 0 0 chr3 66256224 66256284 -151780874 + L2 LINE L2 2896 2955 -358 291 289 48 0 chr3 66256480 66256563 -151780595 + L2 LINE L2 3227 3313 0 2224 97 7 13 chr3 66257271 66257579 -151779579 - AluSx SINE Alu -6 306 1 2136 119 0 16 chr3 66258323 66258633 -151778525 - AluSq SINE Alu -8 305 1 606 151 0 0 chr3 66259021 66259107 -151778051 + AluJ/FLAM SINE Alu 2 87 -225 339 85 0 0 chr3 66260052 66260099 -151777059 + (CA)n Simple_repeat Simple_repeat 2 48 0 186 71 0 0 chr3 66260100 66260128 -151777030 + (TC)n Simple_repeat Simple_repeat 1 28 0 2004 88 57 25 chr3 66260128 66260411 -151776747 - AluSx SINE Alu -20 292 1 2640 203 71 40 chr3 66260961 66261662 -151775496 + LTR68 LTR ERV1 13 735 -5 2190 117 3 0 chr3 66261700 66261998 -151775160 - AluSg SINE Alu -11 299 1 2132 98 17 3 chr3 66262020 66262316 -151774842 - AluSp SINE Alu -13 300 1 307 265 0 0 chr3 66262323 66262425 -151774733 - L1M4 LINE L1 -1664 4482 4381 1794 69 0 0 chr3 66262526 66262744 -151774414 - AluY SINE Alu -93 218 1 2103 136 0 3 chr3 66264127 66264428 -151772730 + AluSx SINE Alu 3 302 -10 662 261 70 74 chr3 66264437 66264881 -151772277 - HAL1 LINE L1 -1094 1413 972 240 236 56 0 chr3 66264920 66264992 -151772166 + MIR SINE MIR 141 216 -46 2271 81 7 42 chr3 66264994 66265304 -151771854 + AluSc SINE Alu 1 299 -10 482 277 79 16 chr3 66265339 66265695 -151771463 + LTR33 LTR ERVL 46 466 -55 905 241 45 8 chr3 66265921 66266166 -151770992 + L1MEc LINE L1 1611 1864 -4532 818 167 90 6 chr3 66266170 66266326 -151770832 + AluSg/x SINE Alu 135 303 -7 2289 105 0 0 chr3 66266328 66266622 -151770536 + AluSx SINE Alu 4 297 -15 875 251 5 9 chr3 66266630 66266845 -151770313 + L1MEc LINE L1 45 258 -6138 2356 152 61 2 chr3 66266847 66267243 -151769915 - MSTB LTR MaLR -7 419 1 3437 223 74 13 chr3 66267243 66268005 -151769153 + L1MEc LINE L1 255 941 -5172 2233 120 0 0 chr3 66268005 66268304 -151768854 + AluSx SINE Alu 1 299 -13 3437 223 74 13 chr3 66268304 66268433 -151768725 + L1MEc LINE L1 941 1061 -5052 5662 108 128 60 chr3 66268441 66270516 -151766642 - pTR5 LTR ERV1 0 8399 504 329 180 0 0 chr3 66270512 66270573 -151766585 - HERV9 LTR ERV1 -835 7564 7504 * 738 134 223 8 chr3 66270574 66270821 -151766337 - HERV9 LTR ERV1 -5757 1139 840 211 238 0 0 chr3 66271178 66271220 -151765938 + MIR SINE MIR 203 244 -18 310 277 32 0 chr3 66271231 66271325 -151765833 - L1MC4 LINE L1 -1331 6711 6615 2112 125 3 10 chr3 66271325 66271614 -151765544 - AluSq SINE Alu -26 287 1 394 322 34 64 chr3 66271879 66271957 -151765201 - L2 LINE L2 -213 3059 2980 2497 73 0 0 chr3 66271957 66272260 -151764898 + AluY SINE Alu 1 303 -8 394 322 34 64 chr3 66272260 66272414 -151764744 - L2 LINE L2 -292 2980 2834 567 242 146 82 chr3 66272772 66273189 -151763969 - MLT1K LTR MaLR 0 588 145 247 293 57 81 chr3 66275902 66276025 -151761133 - L3 LINE CR1 -11 1566 1447 194 318 56 24 chr3 66276147 66276273 -151760885 + L2 LINE L2 2900 3029 -243 1403 166 119 36 chr3 66276449 66276727 -151760431 + AluJb SINE Alu 2 302 0 207 0 0 0 chr3 66277824 66277847 -151759311 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr3 66277886 66277907 -151759251 + AT_rich Low_complexity Low_complexity 1 21 0 292 174 14 14 chr3 66278506 66278575 -151758583 + MER102a DNA MER1_type 225 293 -37 1783 157 21 0 chr3 66280478 66280764 -151756394 + AluJb SINE Alu 3 294 -18 214 379 129 0 chr3 66280779 66280919 -151756239 - MIR SINE MIR 0 262 105 1705 150 62 4 chr3 66280976 66281250 -151755908 - AluSx SINE Alu -22 290 1 297 0 0 0 chr3 66281708 66281741 -151755417 + (TC)n Simple_repeat Simple_repeat 2 34 0 2319 107 0 0 chr3 66282047 66282356 -151754802 - AluSg SINE Alu -1 309 1 234 304 101 0 chr3 66282432 66282511 -151754647 - L2 LINE L2 0 3272 3186 2399 53 0 0 chr3 66282848 66283129 -151754029 + AluY SINE Alu 14 294 -17 513 256 58 31 chr3 66283667 66283858 -151753300 + MIR3 SINE MIR 8 203 -5 2097 117 0 29 chr3 66284100 66284408 -151752750 + AluSx SINE Alu 1 299 -13 274 224 138 0 chr3 66284827 66284885 -151752273 + MIR SINE MIR 33 98 -110 635 211 79 37 chr3 66285229 66285419 -151751739 - MIR SINE MIR -61 201 4 2585 56 7 0 chr3 66287003 66287309 -151749849 + AluY SINE Alu 1 308 -3 2405 76 7 0 chr3 66287322 66287624 -151749534 + AluSp SINE Alu 1 304 -9 2303 95 7 0 chr3 66288608 66288904 -151748254 + AluSq SINE Alu 1 298 -15 1973 149 3 10 chr3 66289106 66289415 -151747743 + AluJo SINE Alu 1 307 -5 180 0 0 0 chr3 66289442 66289462 -151747696 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1124 145 0 18 chr3 66289616 66289782 -151747376 - AluSx SINE Alu -149 163 1 308 288 121 20 chr3 66289783 66289981 -151747177 - L1MEd LINE L1 -1758 4371 4154 635 175 79 0 chr3 66289981 66290107 -151747051 + Tigger7 DNA MER2_type 2 137 -568 * 997 128 32 27 chr3 66290100 66290287 -151746871 + Tigger7 DNA MER2_type 2225 2412 -175 1419 171 7 88 chr3 66290298 66290603 -151746555 - AluJo SINE Alu -32 280 1 988 159 51 0 chr3 66290603 66290779 -151746379 + Tigger7 DNA MER2_type 2302 2486 -1 251 311 33 26 chr3 66290785 66290936 -151746222 - L1MEd LINE L1 -1982 4147 3996 1409 255 26 71 chr3 66291052 66291585 -151745573 - MLT2B1 LTR ERVL -11 509 1 2078 133 0 0 chr3 66291810 66292103 -151745055 - AluSq SINE Alu -20 293 1 326 250 166 40 chr3 66292178 66292474 -151744684 - L1MEd LINE L1 -3151 2978 2646 468 263 99 30 chr3 66292474 66292795 -151744363 - L1MEd LINE L1 -4783 1527 1230 2245 113 7 0 chr3 66292795 66293105 -151744053 - AluSx SINE Alu 0 312 1 468 263 99 30 chr3 66293105 66293340 -151743818 - L1MEd LINE L1 -5080 1230 894 227 263 18 0 chr3 66293377 66293434 -151743724 - L2 LINE L2 -6 3307 3250 1726 165 105 54 chr3 66293473 66293515 -151743643 - L1MB7 LINE L1 -21 6163 6125 1517 167 94 11 chr3 66293515 66293790 -151743368 - AluJb SINE Alu -14 298 1 1726 165 105 54 chr3 66293790 66294231 -151742927 - L1MB7 LINE L1 -59 6125 5655 321 228 79 20 chr3 66294268 66294369 -151742789 - L1MEd LINE L1 -5295 824 718 1353 197 27 47 chr3 66294376 66294675 -151742483 - AluJo SINE Alu -19 293 1 1573 185 93 3 chr3 66295252 66295754 -151741404 + LTR69 LTR ERVL 1 588 0 220 310 78 26 chr3 66296250 66296366 -151740792 + L2 LINE L2 2933 3054 -218 1963 149 0 9 chr3 66297426 66297742 -151739416 - AluSq SINE Alu 0 313 1 1380 179 28 55 chr3 66297881 66298171 -151738987 - AluJo SINE Alu -30 282 1 897 231 57 5 chr3 66299630 66299842 -151737316 + MER58A DNA MER1_type 2 224 0 2384 82 0 0 chr3 66299917 66300221 -151736937 - AluY SINE Alu -7 304 1 205 195 0 0 chr3 66300374 66300415 -151736743 + T-rich Low_complexity Low_complexity 1 41 0 2019 157 0 0 chr3 66300791 66301096 -151736062 - AluSx SINE Alu -7 305 1 377 164 407 0 chr3 66301127 66301267 -151735891 - MER3 DNA MER1_type -6 203 7 472 260 148 20 chr3 66301766 66301962 -151735196 - MIR SINE MIR -11 251 31 2392 57 23 0 chr3 66302308 66302607 -151734551 - AluY SINE Alu -5 306 1 523 222 131 60 chr3 66302721 66302811 -151734347 - L1ME2 LINE L1 -10 6154 6072 2187 110 3 0 chr3 66302811 66303093 -151734065 - AluSx SINE Alu -16 296 14 2179 102 0 7 chr3 66303100 66303395 -151733763 - AluY SINE Alu -18 293 1 523 222 131 60 chr3 66303395 66303548 -151733610 - L1ME2 LINE L1 -97 6067 5885 373 296 0 0 chr3 66305594 66305682 -151731476 + MER58A DNA MER1_type 23 110 0 298 225 28 0 chr3 66305689 66305760 -151731398 + MER58A DNA MER1_type 152 224 0 2196 118 0 3 chr3 66307697 66308003 -151729155 - AluSx SINE Alu -5 307 3 22 0 0 0 chr3 66308011 66308033 -151729125 + AT_rich Low_complexity Low_complexity 1 22 0 1720 131 4 0 chr3 66308549 66308793 -151728365 - AluSx SINE Alu -12 300 56 728 234 129 22 chr3 66308803 66309081 -151728077 - L1ME3 LINE L1 -37 6125 5818 902 82 0 0 chr3 66309086 66309196 -151727962 - AluSc SINE Alu -199 110 1 910 276 25 4 chr3 66309581 66309824 -151727334 + MIR SINE MIR 15 262 0 451 328 67 25 chr3 66309877 66310115 -151727043 - MIR SINE MIR -1 261 14 1894 111 47 4 chr3 66310904 66311183 -151725975 + AluSg SINE Alu 2 292 -18 240 257 297 0 chr3 66311514 66311615 -151725543 - L3 LINE CR1 -6 1571 1441 1192 182 97 55 chr3 66311632 66311701 -151725457 - MER2 DNA MER2_type 0 344 279 1587 169 0 25 chr3 66311701 66311979 -151725179 + AluJo SINE Alu 28 298 -14 1192 182 97 55 chr3 66311979 66312239 -151724919 - MER2 DNA MER2_type -65 279 1 2372 96 0 19 chr3 66312322 66312636 -151724522 - AluSq SINE Alu -2 311 4 507 235 34 8 chr3 66312887 66313006 -151724152 + FLAM_C SINE Alu 2 123 -10 1417 198 54 4 chr3 66315724 66316002 -151721156 + AluJo SINE Alu 1 292 -20 2242 96 0 13 chr3 66316169 66316470 -151720688 - AluSg SINE Alu -13 297 1 27361 87 11 10 chr3 66318425 66320574 -151716584 + L1PA7 LINE L1 1144 3289 -2865 2437 77 0 3 chr3 66320574 66320873 -151716285 + AluY SINE Alu 1 298 -13 27361 87 11 10 chr3 66320873 66323261 -151713897 + L1PA7 LINE L1 3289 5688 -466 2193 115 0 0 chr3 66323261 66323557 -151713601 + AluSc SINE Alu 1 296 -13 27361 87 11 10 chr3 66323557 66323831 -151713327 + L1PA7 LINE L1 5688 5960 -194 10259 154 42 70 chr3 66323800 66325317 -151711841 + L1MA4A LINE L1 2607 4165 -2138 * 249 42 42 21 chr3 66325317 66325365 -151711793 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 921 179 0 0 chr3 66325373 66325518 -151711640 + AluSg/x SINE Alu 125 269 -43 244 0 0 53 chr3 66325525 66325563 -151711595 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 10259 154 42 70 chr3 66325563 66325627 -151711531 + L1MA4A LINE L1 4178 4242 -2061 2158 105 3 20 chr3 66325627 66325933 -151711225 + AluSx SINE Alu 6 306 -6 10259 154 42 70 chr3 66325933 66326643 -151710515 + L1MA4A LINE L1 4242 4970 -1333 1876 145 20 17 chr3 66326643 66326939 -151710219 + AluSx SINE Alu 6 302 -10 10259 154 42 70 chr3 66326939 66327480 -151709678 + L1MA4A LINE L1 4970 5525 -778 1656 186 3 16 chr3 66327480 66327786 -151709372 + AluJo SINE Alu 2 303 -9 10259 154 42 70 chr3 66327786 66328580 -151708578 + L1MA4A LINE L1 5525 6292 -11 290 281 0 0 chr3 66328792 66328856 -151708302 + L2 LINE L2 3207 3270 -2 2337 68 14 3 chr3 66328999 66329293 -151707865 - AluY SINE Alu -14 297 1 1529 102 0 0 chr3 66329627 66329823 -151707335 + AluSc SINE Alu 1 196 -113 260 77 0 0 chr3 66329823 66329862 -151707296 + AluSc SINE Alu 266 304 -4 2007 147 3 0 chr3 66329890 66330183 -151706975 - AluSq SINE Alu -19 294 1 21 0 0 0 chr3 66331649 66331670 -151705488 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr3 66332657 66332694 -151704464 + AT_rich Low_complexity Low_complexity 1 37 0 2183 93 16 50 chr3 66334356 66334678 -151702480 - AluY SINE Alu 0 311 1 1887 83 98 4 chr3 66336346 66336612 -151700546 - AluSx SINE Alu -21 291 1 597 222 106 37 chr3 66337647 66337836 -151699322 - MER58A DNA MER1_type -21 203 2 23 68 0 0 chr3 66338457 66338501 -151698657 + AT_rich Low_complexity Low_complexity 1 44 0 313 185 152 0 chr3 66338552 66338644 -151698514 - L1MB2 LINE L1 -118 6053 5948 2489 181 144 21 chr3 66338652 66339360 -151697798 + L1MB7 LINE L1 5382 6176 -8 702 180 41 0 chr3 66340010 66340132 -151697026 + AluJo/FLAM SINE Alu 1 127 -185 488 181 0 0 chr3 66340133 66340216 -151696942 + AluJ/FRAM SINE Alu 216 298 -14 519 250 37 0 chr3 66340484 66340592 -151696566 - L2 LINE L2 -10 3303 3192 1418 184 107 4 chr3 66341496 66341767 -151695391 + AluJo SINE Alu 1 299 -13 6011 200 184 4 chr3 66342009 66343445 -151693713 + L1M2 LINE L1 1 1695 -5154 12383 203 40 8 chr3 66343455 66348799 -151688359 + L1PBa LINE L1 6 5761 -1101 29408 106 14 70 chr3 66348813 66352414 -151684744 + L1P LINE L1 12 3188 -2958 2447 77 0 3 chr3 66352414 66352714 -151684444 + AluY SINE Alu 1 299 -12 29408 106 14 70 chr3 66352714 66354655 -151682503 + L1P LINE L1 3188 5238 -908 1645 196 56 32 chr3 66354767 66354798 -151682360 + L1M2 LINE L1 3358 3387 -3461 1538 190 9 38 chr3 66354798 66354917 -151682241 - AluJb SINE Alu -5 307 186 2100 125 10 13 chr3 66354917 66355228 -151681930 - AluSx SINE Alu 0 312 3 1538 190 9 38 chr3 66355228 66355424 -151681734 - AluJb SINE Alu -126 186 1 1645 196 56 32 chr3 66355424 66355801 -151681357 + L1M2 LINE L1 3387 3776 -3072 381 291 20 84 chr3 66356057 66356143 -151681015 + L1M2 LINE L1 4701 4791 -2057 1364 197 115 0 chr3 66356143 66356412 -151680746 + AluSg SINE Alu 1 300 0 381 291 20 84 chr3 66356412 66356621 -151680537 + L1M2 LINE L1 4791 4977 -1871 1583 153 10 52 chr3 66356838 66357145 -151680013 - AluJo SINE Alu -18 294 1 2134 131 0 3 chr3 66357503 66357809 -151679349 + AluSq SINE Alu 1 305 -8 2445 125 78 10 chr3 66358006 66358405 -151678753 + MSTB LTR MaLR 1 426 0 694 138 17 35 chr3 66358454 66358570 -151678588 - FLAM_C SINE Alu -18 125 12 312 195 0 98 chr3 66359263 66359345 -151677813 - MER2 DNA MER2_type -270 75 2 1867 128 13 3 chr3 66359351 66359649 -151677509 + LTR49 LTR ERV1 1 301 -294 2177 75 14 4 chr3 66359649 66359951 -151677207 + AluY SINE Alu 1 305 0 2144 84 22 0 chr3 66360051 66360324 -151676834 - AluSx SINE Alu -33 279 1 286 51 0 0 chr3 66360326 66360365 -151676793 - L1P5 LINE L1 -545 5606 5568 1231 175 57 4 chr3 66360366 66360612 -151676546 + MSTA LTR MaLR 168 426 -2 368 304 105 12 chr3 66360665 66360836 -151676322 - L1M4 LINE L1 -1842 4304 4118 1443 177 53 35 chr3 66360865 66361148 -151676010 - AluJo SINE Alu -24 288 1 21 36 0 0 chr3 66361149 66361177 -151675981 + AT_rich Low_complexity Low_complexity 1 28 0 2328 94 0 13 chr3 66361357 66361666 -151675492 - AluSc SINE Alu -4 305 1 260 0 57 0 chr3 66362757 66362792 -151674366 + (TCTCCC)n Simple_repeat Simple_repeat 4 40 0 372 41 0 0 chr3 66362894 66362943 -151674215 - AluY SINE Alu -250 49 1 1708 179 7 21 chr3 66364685 66364976 -151672182 + AluSx SINE Alu 1 287 -25 983 154 44 6 chr3 66365769 66365951 -151671207 - MER30 DNA MER1_type -33 197 9 1634 140 37 11 chr3 66366571 66366842 -151670316 - AluJb SINE Alu -1 311 34 322 227 104 37 chr3 66367453 66367616 -151669542 - L1M4 LINE L1 -757 5389 5216 237 200 13 53 chr3 66367796 66367871 -151669287 - L1M4 LINE L1 -2299 3847 3776 1018 253 176 14 chr3 66367989 66368642 -151668516 - L1M4 LINE L1 -2588 3558 2800 936 129 77 6 chr3 66368642 66368812 -151668346 + MSTA LTR MaLR 3 184 -244 459 58 0 14 chr3 66368813 66368882 -151668276 - MADE1 DNA Mariner 0 80 13 437 62 0 0 chr3 66368890 66368955 -151668203 - L1PB1 LINE L1 -2 6149 6085 1312 108 0 0 chr3 66369067 66369234 -151667924 - AluSc SINE Alu -141 168 2 28 61 0 0 chr3 66369371 66369420 -151667738 + AT_rich Low_complexity Low_complexity 1 49 0 1191 135 65 22 chr3 66369428 66369658 -151667500 + MER72 LTR ERV1 1 240 -482 2245 138 16 5 chr3 66369667 66370038 -151667120 + MER72 LTR ERV1 348 722 0 23 33 0 0 chr3 66370047 66370077 -151667081 + AT_rich Low_complexity Low_complexity 1 30 0 1525 177 17 47 chr3 66371296 66371595 -151665563 + AluJo SINE Alu 1 290 -22 2023 125 17 3 chr3 66371639 66371928 -151665230 + AluSq SINE Alu 1 293 -20 234 356 11 11 chr3 66372462 66372549 -151664609 + MIR SINE MIR 18 104 -158 1998 127 7 3 chr3 66372556 66372847 -151664311 - AluSc SINE Alu -17 292 1 2131 97 4 0 chr3 66373025 66373303 -151663855 - AluSc SINE Alu -30 279 1 222 232 47 163 chr3 66373859 66373988 -151663170 - MIR SINE MIR -11 251 109 1543 175 0 26 chr3 66373988 66374256 -151662902 + AluJb SINE Alu 1 261 -51 222 232 47 163 chr3 66374256 66374272 -151662886 - MIR SINE MIR -153 109 129 297 0 0 0 chr3 66374272 66374305 -151662853 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 222 232 47 163 chr3 66374305 66374348 -151662810 - MIR SINE MIR -132 130 84 2312 47 0 0 chr3 66374447 66374723 -151662435 + AluY SINE Alu 1 276 -35 282 148 0 0 chr3 66374743 66374797 -151662361 + AluJb SINE Alu 247 300 -1 25 0 0 0 chr3 66374797 66374822 -151662336 + AT_rich Low_complexity Low_complexity 1 25 0 2353 83 0 52 chr3 66374822 66375149 -151662009 + AluY SINE Alu 1 310 -1 266 208 0 38 chr3 66376953 66377006 -151660152 + L2 LINE L2 521 571 -2743 2174 98 3 46 chr3 66377007 66377334 -151659824 - AluSq SINE Alu 0 313 1 1062 141 5 32 chr3 66377478 66377663 -151659495 + AluJb SINE Alu 132 311 -1 2109 113 38 0 chr3 66378954 66379245 -151657913 - AluSx SINE Alu -10 302 1 779 198 141 21 chr3 66379271 66379463 -151657695 + AluSg/x SINE Alu 85 299 -13 540 241 97 36 chr3 66379694 66379889 -151657269 - MER3 DNA MER1_type -1 208 2 215 220 20 0 chr3 66381919 66381969 -151655189 - L2 LINE L2 -1 3312 3262 579 15 0 0 chr3 66382783 66382851 -151654307 + (CA)n Simple_repeat Simple_repeat 2 69 0 223 145 43 29 chr3 66382986 66383055 -151654103 + (TA)n Simple_repeat Simple_repeat 2 71 0 480 92 32 65 chr3 66383067 66383252 -151653906 + (TA)n Simple_repeat Simple_repeat 2 180 0 398 20 20 0 chr3 66383253 66383304 -151653854 + (CA)n Simple_repeat Simple_repeat 2 53 0 266 236 29 3 chr3 66383548 66383652 -151653506 - L1MC4 LINE L1 -40 8002 7811 1980 119 51 0 chr3 66383812 66384105 -151653053 + AluSp SINE Alu 1 308 -5 1097 148 74 5 chr3 66384342 66384544 -151652614 - MER20 DNA MER1_type -3 216 1 386 322 38 11 chr3 66384928 66385111 -151652047 + MIR SINE MIR 2 189 -73 856 184 33 0 chr3 66385193 66385345 -151651813 - FRAM SINE Alu -9 157 1 5784 126 17 62 chr3 66385579 66386566 -151650592 - L1MA3 LINE L1 0 6305 5275 2509 62 0 0 chr3 66386566 66386871 -151650287 - AluY SINE Alu -6 305 1 5784 126 17 62 chr3 66386871 66386882 -151650276 - L1MA3 LINE L1 -1030 5275 5265 2143 70 3 11 chr3 66386882 66387196 -151649962 - AluY SINE Alu 0 312 1 2091 130 3 10 chr3 66387206 66387506 -151649652 - AluSg SINE Alu -12 298 1 1799 172 3 3 chr3 66387508 66387799 -151649359 - AluJb SINE Alu -21 291 1 5784 126 17 62 chr3 66387799 66388183 -151648975 - L1MA3 LINE L1 -1050 5255 4947 707 196 21 7 chr3 66388188 66388331 -151648827 - MER20 DNA MER1_type -74 145 1 8215 166 7 18 chr3 66388337 66389733 -151647425 - L1MA3 LINE L1 -1213 4933 3555 2144 118 7 3 chr3 66389733 66390030 -151647128 + AluSx SINE Alu 1 298 -14 8215 166 7 18 chr3 66390030 66390291 -151646867 - L1MA3 LINE L1 -2591 3555 3293 239 207 24 61 chr3 66390527 66390609 -151646549 + MIR SINE MIR 178 256 -6 562 195 186 0 chr3 66390619 66390732 -151646426 - FAM SINE Alu -22 163 30 3506 216 63 46 chr3 66390732 66392209 -151644949 - L1ME1 LINE L1 -284 5882 4396 232 217 14 0 chr3 66392227 66392296 -151644862 - L1 LINE L1 -1703 4443 4374 40698 72 10 6 chr3 66392327 66398456 -151638702 - L1PA5 LINE L1 0 6154 1 378 165 110 11 chr3 66398505 66398596 -151638562 - L1 LINE L1 -1803 4343 4244 405 0 0 0 chr3 66398770 66398815 -151638343 + (TTA)n Simple_repeat Simple_repeat 1 45 0 1444 180 44 15 chr3 66398815 66399087 -151638071 - AluJb SINE Alu -32 280 1 6149 74 12 74 chr3 66399219 66400236 -151636922 - SVA Other Other 0 1386 433 5833 68 29 16 chr3 66400236 66401047 -151636111 - SVA Other Other -551 835 11 774 290 62 18 chr3 66401171 66401557 -151635601 - L1 LINE L1 -2185 3961 3559 1632 149 12 40 chr3 66402832 66403175 -151633983 + MLT1B LTR MaLR 1 390 0 830 193 0 0 chr3 66403638 66403788 -151633370 - L1MB5 LINE L1 -8 6166 6017 297 325 120 8 chr3 66404341 66404458 -151632700 - MIR3 SINE MIR -41 167 38 1676 166 64 7 chr3 66404463 66404758 -151632400 - AluJb SINE Alu 0 312 1 1984 160 41 22 chr3 66405030 66405398 -151631760 + THE1C LTR MaLR 1 375 0 294 193 0 35 chr3 66405762 66405819 -151631339 - L3 LINE CR1 -2 1575 1521 428 338 125 23 chr3 66405877 66406074 -151631084 + L2 LINE L2 1844 2020 -1294 963 211 85 0 chr3 66406074 66406273 -151630885 + MER20 DNA MER1_type 1 216 -3 428 338 125 23 chr3 66406273 66406516 -151630642 + L2 LINE L2 2020 2329 -985 2139 166 100 10 chr3 66406519 66406910 -151630248 - MSTA LTR MaLR 0 428 3 7590 167 53 26 chr3 66406912 66408413 -151628745 - MSTA-int LTR MaLR 0 1580 1 2299 140 76 15 chr3 66408413 66408806 -151628352 - MSTA LTR MaLR 0 428 12 1699 176 48 28 chr3 66410498 66410855 -151626303 - MLT1A1 LTR MaLR -1 364 1 350 333 153 0 chr3 66411356 66411467 -151625691 - L2 LINE L2 0 3272 3145 381 323 0 8 chr3 66412052 66412176 -151624982 + L2 LINE L2 3150 3272 0 6545 41 33 44 chr3 66412253 66413156 -151624002 - L1PA8 LINE L1 -14 6158 5266 2384 88 0 0 chr3 66413166 66413462 -151623696 - AluSg SINE Alu -14 296 1 216 0 0 0 chr3 66413587 66413611 -151623547 + (T)n Simple_repeat Simple_repeat 1 24 0 386 314 46 36 chr3 66413839 66414033 -151623125 + MER117 DNA MER1_type 2 197 0 185 269 64 26 chr3 66414372 66414450 -151622708 + MIR SINE MIR 74 154 -108 195 167 0 0 chr3 66415481 66415523 -151621635 + (CA)n Simple_repeat Simple_repeat 2 43 0 670 193 0 8 chr3 66415650 66415769 -151621389 - FLAM_A SINE Alu -13 120 3 21 0 0 0 chr3 66416046 66416067 -151621091 + AT_rich Low_complexity Low_complexity 1 21 0 1617 114 126 11 chr3 66416249 66416511 -151620647 - AluSg1 SINE Alu -17 292 1 1455 179 4 12 chr3 66416870 66417122 -151620036 + AluJo SINE Alu 19 268 -44 251 0 59 0 chr3 66417127 66417161 -151619997 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 2125 91 7 7 chr3 66417183 66417487 -151619671 + AluSc SINE Alu 6 309 0 187 367 122 10 chr3 66417740 66417838 -151619320 + L2 LINE L2 2584 2692 -622 1570 170 25 3 chr3 66417838 66418121 -151619037 + AluJo SINE Alu 15 303 -9 439 99 50 20 chr3 66418121 66418222 -151618936 + GA-rich Low_complexity Low_complexity 1 104 0 287 313 83 51 chr3 66418237 66418454 -151618704 + L2 LINE L2 2675 2898 -416 2303 88 0 16 chr3 66418878 66419184 -151617974 - AluSg SINE Alu -7 303 3 2050 171 5 42 chr3 66419254 66419633 -151617525 - MLT1A1 LTR MaLR 0 365 1 1722 151 61 0 chr3 66419662 66419941 -151617217 + AluJb SINE Alu 1 296 -16 432 130 0 0 chr3 66419960 66420029 -151617129 + (CA)n Simple_repeat Simple_repeat 2 70 0 2362 95 7 0 chr3 66420214 66420520 -151616638 + AluSq SINE Alu 4 311 -2 225 0 0 0 chr3 66420522 66420547 -151616611 + (GGAA)n Simple_repeat Simple_repeat 3 27 0 26 0 0 0 chr3 66420673 66420699 -151616459 + AT_rich Low_complexity Low_complexity 1 26 0 2488 81 3 0 chr3 66421364 66421671 -151615487 + AluSp SINE Alu 1 308 -5 787 188 62 38 chr3 66422045 66422205 -151614953 + FRAM SINE Alu 1 164 -2 23 0 0 0 chr3 66422205 66422228 -151614930 + AT_rich Low_complexity Low_complexity 1 23 0 1957 189 65 5 chr3 66422285 66422698 -151614460 - L1MB7 LINE L1 -5 6179 5742 290 269 161 28 chr3 66423221 66423380 -151613778 + MIR SINE MIR 37 216 -46 192 235 88 15 chr3 66423387 66423455 -151613703 + L2 LINE L2 3169 3241 -31 459 286 0 54 chr3 66424220 66424233 -151612925 - L2 LINE L2 0 3272 3260 2144 73 0 42 chr3 66424233 66424519 -151612639 - AluY SINE Alu -37 274 1 459 286 0 54 chr3 66424519 66424652 -151612506 - L2 LINE L2 -12 3260 3134 326 259 37 37 chr3 66425100 66425208 -151611950 - L1ME3 LINE L1 0 6162 6055 241 118 0 0 chr3 66425208 66425242 -151611916 - MER3 DNA MER1_type -160 49 16 508 146 32 89 chr3 66425242 66425365 -151611793 - L1ME3 LINE L1 -142 6020 5905 619 176 169 7 chr3 66425374 66425510 -151611648 - L1ME3 LINE L1 -171 5991 5834 1522 132 4 4 chr3 66425770 66426012 -151611146 - pTR5 LTR ERV1 -2025 413 172 366 188 52 21 chr3 66426015 66426111 -151611047 - LTR30 LTR ERV1 -80 642 544 4558 124 58 72 chr3 66426115 66427117 -151610041 - pTR5 LTR ERV1 -417 2021 743 1598 149 91 4 chr3 66427487 66427762 -151609396 + AluJo SINE Alu 1 299 -13 27 0 0 0 chr3 66427762 66427789 -151609369 + AT_rich Low_complexity Low_complexity 1 27 0 279 266 31 0 chr3 66428152 66428216 -151608942 + polypyrimidine Low_complexity Low_complexity 4 69 0 1899 153 60 17 chr3 66428307 66428659 -151608499 - THE1C LTR MaLR -8 367 1 381 113 32 65 chr3 66428861 66429047 -151608111 + (TA)n Simple_repeat Simple_repeat 1 180 0 330 175 52 13 chr3 66429092 66429246 -151607912 + (CTATA)n Simple_repeat Simple_repeat 4 163 0 225 179 85 57 chr3 66429248 66429354 -151607804 + (TATATG)n Simple_repeat Simple_repeat 2 110 0 602 183 11 22 chr3 66429617 66429797 -151607361 + CT-rich Low_complexity Low_complexity 3 180 0 921 112 6 12 chr3 66429817 66429978 -151607180 + (TTTC)n Simple_repeat Simple_repeat 1 160 0 1281 138 0 29 chr3 66429978 66430188 -151606970 - AluJb SINE Alu -34 278 75 485 213 9 9 chr3 66430522 66430630 -151606528 + L1MB7 LINE L1 6066 6173 -11 273 261 88 3 chr3 66430663 66430827 -151606331 + L1MC/D LINE L1 5276 5439 -727 293 307 106 26 chr3 66431097 66431286 -151605872 - L1MC4a LINE L1 -1900 5908 5705 402 271 123 0 chr3 66431458 66431580 -151605578 + L1MC/D LINE L1 5588 5724 -2084 5258 183 23 51 chr3 66431696 66431762 -151605396 + L1MC1 LINE L1 3950 4016 -2317 856 145 0 46 chr3 66431762 66431893 -151605265 + FLAM_C SINE Alu 1 125 -8 5258 183 23 51 chr3 66431893 66432284 -151604874 + L1MC1 LINE L1 4016 4416 -1917 2311 71 0 0 chr3 66432284 66432587 -151604571 + AluY SINE Alu 3 305 0 5258 183 23 51 chr3 66432587 66433816 -151603342 + L1MC1 LINE L1 4416 5565 -768 1895 174 0 3 chr3 66433816 66434127 -151603031 - AluJo SINE Alu -1 311 2 5258 183 23 51 chr3 66434127 66434626 -151602532 + L1MC1 LINE L1 5565 6076 -257 2248 122 14 43 chr3 66434632 66435002 -151602156 + THE1C LTR MaLR 15 373 -2 1160 221 48 0 chr3 66435003 66435252 -151601906 + L1MC1 LINE L1 6071 6331 -2 2509 43 0 20 chr3 66435345 66435650 -151601508 - AluY SINE Alu -12 299 1 428 250 19 9 chr3 66435753 66435861 -151601297 - L2 LINE L2 -2 3311 3203 370 291 134 51 chr3 66435865 66436157 -151601001 + L2 LINE L2 2948 3263 -9 2607 179 23 48 chr3 66436580 66437098 -151600060 + MLT1D LTR MaLR 1 505 0 401 150 0 0 chr3 66437102 66437162 -151599996 + Tigger3(Golem) DNA MER2_type 1 60 -2969 928 168 13 0 chr3 66437163 66437312 -151599846 + Tigger3(Golem) DNA MER2_type 2878 3028 -1 2186 107 21 0 chr3 66437676 66437965 -151599193 - AluSq SINE Alu -16 297 3 2238 123 3 0 chr3 66439737 66440046 -151597112 - AluSx SINE Alu -2 310 1 21 0 0 0 chr3 66440120 66440141 -151597017 + AT_rich Low_complexity Low_complexity 1 21 0 579 305 21 16 chr3 66440251 66440438 -151596720 + MIR SINE MIR 3 190 -72 1712 194 0 0 chr3 66441109 66441413 -151595745 - AluJb SINE Alu 0 304 1 431 290 44 27 chr3 66441540 66441723 -151595435 - MIR SINE MIR -14 248 63 2438 92 0 0 chr3 66441737 66442042 -151595116 + AluSg SINE Alu 1 305 -5 8118 28 11 11 chr3 66442265 66443192 -151593966 - L1PA3 LINE L1 -3 6152 5226 10191 16 2 2 chr3 66443193 66444382 -151592776 + L1P LINE L1 2032 3220 -2926 3423 243 74 13 chr3 66444474 66445364 -151591794 + L1MEc LINE L1 34 993 -5403 1976 143 7 0 chr3 66445364 66445650 -151591508 + AluSx SINE Alu 4 291 -21 3423 243 74 13 chr3 66445650 66445754 -151591404 + L1MEc LINE L1 993 1089 -5307 279 295 87 39 chr3 66446032 66446239 -151590919 - L2 LINE L2 -1173 2141 1925 472 224 9 19 chr3 66446290 66446397 -151590761 + L2 LINE L2 3208 3313 0 520 296 153 0 chr3 66446660 66446863 -151590295 + MIR SINE MIR 8 241 -21 1555 179 11 14 chr3 66446891 66447176 -151589982 + AluJo SINE Alu 29 312 0 3349 176 49 19 chr3 66447177 66447854 -151589304 + L1MB4 LINE L1 5484 6180 0 240 245 0 0 chr3 66447927 66447976 -151589182 + L1MC4 LINE L1 7623 7671 -371 537 53 27 40 chr3 66447978 66448053 -151589105 - Alu SINE Alu -12 298 225 233 229 153 8 chr3 66448073 66448191 -151588967 + L1MC4 LINE L1 7690 7824 -218 732 193 70 99 chr3 66448291 66448347 -151588811 - AluJo SINE Alu -144 168 112 1802 176 0 0 chr3 66448347 66448637 -151588521 + AluJo SINE Alu 1 290 -22 732 193 70 99 chr3 66448637 66448751 -151588407 - AluJo SINE Alu -200 112 3 289 292 283 0 chr3 66448875 66448995 -151588163 - L2 LINE L2 -208 3064 2911 2259 123 3 0 chr3 66449372 66449681 -151587477 + AluSx SINE Alu 1 310 -2 278 207 17 0 chr3 66450053 66450111 -151587047 - L1ME1 LINE L1 -162 6004 5946 193 156 0 0 chr3 66450188 66450220 -151586938 + L2 LINE L2 3222 3253 -19 2150 152 65 11 chr3 66450949 66451318 -151585840 + MLT1B LTR MaLR 2 390 0 608 295 90 17 chr3 66451336 66451520 -151585638 - L1ME3 LINE L1 -222 5940 5771 2324 77 6 10 chr3 66451520 66451831 -151585327 - AluSg SINE Alu 0 310 1 608 295 90 17 chr3 66451831 66451866 -151585292 - L1ME3 LINE L1 -391 5771 5740 2323 60 0 3 chr3 66451866 66452185 -151584973 - AluY SINE Alu 0 319 2 608 295 90 17 chr3 66452185 66452455 -151584703 - L1ME3 LINE L1 -422 5740 5405 1660 124 0 0 chr3 66452471 66452705 -151584453 - AluSg/x SINE Alu -9 303 70 989 186 48 112 chr3 66452805 66452852 -151584306 - L1 LINE L1 -3423 2723 2675 1608 174 9 38 chr3 66452852 66453048 -151584110 + AluJo SINE Alu 1 186 -126 1852 154 10 16 chr3 66453048 66453360 -151583798 + AluSx SINE Alu 3 312 0 1608 174 9 38 chr3 66453360 66453480 -151583678 + AluJo SINE Alu 186 308 -4 989 186 48 112 chr3 66453480 66453744 -151583414 - L1 LINE L1 -3471 2675 2432 445 335 68 48 chr3 66453972 66454062 -151583096 + MIR SINE MIR 6 93 -169 2520 74 0 0 chr3 66454062 66454371 -151582787 - AluY SINE Alu -2 309 1 445 335 68 48 chr3 66454371 66454528 -151582630 + MIR SINE MIR 93 258 -4 225 170 21 0 chr3 66454582 66454629 -151582529 - L2 LINE L2 -72 3241 3194 2049 143 29 72 chr3 66454995 66455372 -151581786 + MLT1A1 LTR MaLR 5 365 0 757 265 146 30 chr3 66455770 66455995 -151581163 + L1ME4a LINE L1 5628 5825 -296 2073 109 34 14 chr3 66455995 66456289 -151580869 + AluSg SINE Alu 2 301 -9 757 265 146 30 chr3 66456289 66456467 -151580691 + L1ME4a LINE L1 5825 6078 -43 733 287 121 60 chr3 66456472 66456493 -151580665 + MLT1L LTR MaLR 2 20 -595 2204 172 57 0 chr3 66456493 66456859 -151580299 + MLT1B LTR MaLR 1 387 -3 733 287 121 60 chr3 66456859 66457416 -151579742 + MLT1L LTR MaLR 20 615 0 1167 138 0 0 chr3 66458001 66458168 -151578990 - AluSg/x SINE Alu -13 299 133 2204 131 0 0 chr3 66458168 66458481 -151578677 - AluSq SINE Alu 0 313 1 227 265 81 44 chr3 66458521 66458657 -151578501 + L2 LINE L2 2996 3136 -177 500 276 25 25 chr3 66458789 66458952 -151578206 + L1MC/D LINE L1 5632 5794 -2014 1406 181 72 57 chr3 66459007 66459356 -151577802 - MLT1A1 LTR MaLR -11 354 1 27 29 0 0 chr3 66459378 66459412 -151577746 + AT_rich Low_complexity Low_complexity 1 34 0 1037 177 54 10 chr3 66459412 66459615 -151577543 + AluJo SINE Alu 83 294 -18 509 277 19 7 chr3 66459628 66459783 -151577375 - MIR SINE MIR -48 214 58 2522 62 0 3 chr3 66460068 66460373 -151576785 - AluY SINE Alu -7 304 1 15470 122 25 31 chr3 66460419 66461804 -151575354 + Tigger1 DNA MER2_type 2 1394 -1024 3301 158 22 39 chr3 66461804 66462391 -151574767 - LTR22 LTR ERVK -3 577 1 15470 122 25 31 chr3 66462391 66463273 -151573885 + Tigger1 DNA MER2_type 1394 2256 -162 1619 191 0 31 chr3 66463273 66463567 -151573591 - AluJo SINE Alu -22 290 6 15470 122 25 31 chr3 66463567 66463730 -151573428 + Tigger1 DNA MER2_type 2256 2418 0 1836 169 0 25 chr3 66464214 66464534 -151572624 - AluJo SINE Alu 0 312 1 479 283 108 40 chr3 66464764 66464843 -151572315 + L1ME4a LINE L1 5528 5600 -521 1914 167 7 0 chr3 66464843 66465142 -151572016 - AluJb SINE Alu -11 301 1 479 283 108 40 chr3 66465142 66465461 -151571697 + L1ME4a LINE L1 5600 5953 -168 2089 124 0 13 chr3 66465799 66466097 -151571061 + AluSp SINE Alu 1 294 -19 2221 148 36 25 chr3 66466375 66466734 -151570424 - THE1B LTR MaLR -1 363 1 256 210 145 94 chr3 66467441 66467579 -151569579 - MIR SINE MIR 0 262 118 1426 139 69 154 chr3 66467901 66467969 -151569189 - MLT1B LTR MaLR 0 390 318 1919 137 18 0 chr3 66467969 66468247 -151568911 + AluSx SINE Alu 3 285 -27 1426 139 69 154 chr3 66468247 66468601 -151568557 - MLT1B LTR MaLR -72 318 4 313 263 35 53 chr3 66468674 66468788 -151568370 + L3 LINE CR1 1459 1570 -7 408 236 35 111 chr3 66469921 66470120 -151567038 + MIR SINE MIR 77 260 -2 485 297 32 0 chr3 66470390 66470545 -151566613 - MIR SINE MIR -28 234 75 519 143 0 76 chr3 66470611 66470716 -151566442 + FLAM_A SINE Alu 41 137 -5 1120 164 128 18 chr3 66470757 66470983 -151566175 + MER96B DNA MER1_type? 1 251 -166 237 349 47 16 chr3 66471026 66471155 -151566003 + L2 LINE L2 2520 2652 -662 1021 236 84 76 chr3 66471155 66471536 -151565622 - LTR16A LTR ERVL -10 440 57 1000 180 6 17 chr3 66471729 66471907 -151565251 - AluJo SINE Alu -123 189 14 241 337 50 10 chr3 66471956 66472057 -151565101 - MIR SINE MIR -107 155 51 507 240 47 7 chr3 66472780 66472930 -151564228 - MIR SINE MIR -1 261 106 356 285 61 30 chr3 66473195 66473360 -151563798 + MIR SINE MIR 87 256 -6 407 223 36 36 chr3 66473608 66473720 -151563438 + MIR SINE MIR 111 222 -40 335 207 122 10 chr3 66474548 66474662 -151562496 + MIR SINE MIR 4 131 -77 1023 118 6 11 chr3 66474665 66474843 -151562315 + (TTCTC)n Simple_repeat Simple_repeat 4 180 0 322 105 18 0 chr3 66475011 66475068 -151562090 + (TTCCC)n Simple_repeat Simple_repeat 3 60 0 * 414 53 0 0 chr3 66475063 66475120 -151562038 + (TTTC)n Simple_repeat Simple_repeat 1 57 0 228 303 22 0 chr3 66475715 66475804 -151561354 + (CA)n Simple_repeat Simple_repeat 2 92 0 492 312 47 18 chr3 66476022 66476192 -151560966 + L3 LINE CR1 347 521 -1056 228 345 60 0 chr3 66476198 66476282 -151560876 + L2 LINE L2 3168 3256 -16 2072 166 0 6 chr3 66476392 66476706 -151560452 - AluJb SINE Alu 0 312 1 436 278 35 6 chr3 66476859 66477028 -151560130 + L1MC4a LINE L1 5582 5755 -366 529 241 78 18 chr3 66477038 66477204 -151559954 + MLT1J LTR MaLR 5 180 -331 278 273 79 29 chr3 66477231 66477370 -151559788 + L1ME4a LINE L1 5970 6115 -6 740 143 0 0 chr3 66477567 66477672 -151559486 - FLAM_A SINE Alu -10 132 28 5252 35 3 3 chr3 66477821 66478482 -151558676 - L1P LINE L1 -727 5428 4768 6388 29 1 18 chr3 66478482 66479212 -151557946 + L1PA4 LINE L1 5431 6155 0 200 233 0 0 chr3 66479233 66479276 -151557882 + L3 LINE CR1 1247 1289 -288 385 230 166 22 chr3 66479301 66479440 -151557718 - MIR SINE MIR -30 232 74 452 304 30 30 chr3 66479498 66479666 -151557492 + L3 LINE CR1 1308 1475 -102 243 309 71 8 chr3 66480334 66480460 -151556698 - L2 LINE L2 -196 3076 2943 447 323 44 39 chr3 66481118 66481347 -151555811 - MIR SINE MIR -5 257 28 339 220 51 51 chr3 66481866 66481984 -151555174 + L1MC4a LINE L1 5782 5899 -1909 240 173 93 53 chr3 66481985 66482060 -151555098 - MLT1K LTR MaLR 0 588 511 294 236 94 114 chr3 66482137 66482298 -151554860 - MLT1K LTR MaLR -111 477 323 1775 161 34 7 chr3 66482298 66482590 -151554568 - AluJo SINE Alu -12 300 1 294 236 94 114 chr3 66482590 66482725 -151554433 - MLT1K LTR MaLR -265 323 187 325 161 179 0 chr3 66483945 66484001 -151553157 - MER58A DNA MER1_type -32 75 10 640 195 8 0 chr3 66484004 66484122 -151553036 - MER96B DNA MER1_type? -295 122 4 295 308 49 21 chr3 66484231 66484374 -151552784 - MIR SINE MIR -44 218 72 396 240 58 137 chr3 66486004 66486333 -151550825 + L2 LINE L2 2225 2527 -787 803 241 30 5 chr3 66486340 66486539 -151550619 + MIR SINE MIR 32 235 -27 457 289 110 13 chr3 66486906 66487134 -151550024 - L2 LINE L2 -787 2527 2278 410 303 149 61 chr3 66487472 66487700 -151549458 + L2 LINE L2 3025 3272 0 222 136 0 0 chr3 66487941 66487985 -151549173 + (TG)n Simple_repeat Simple_repeat 2 45 0 351 259 74 19 chr3 66488016 66488124 -151549034 - MIR3 SINE MIR -6 202 89 2116 119 3 3 chr3 66488859 66489161 -151547997 + AluSx SINE Alu 1 302 -10 36 100 0 0 chr3 66490100 66490220 -151546938 + GC_rich Low_complexity Low_complexity 1 120 0 359 286 0 8 chr3 66490243 66490362 -151546796 + CT-rich Low_complexity Low_complexity 3 120 0 180 176 0 0 chr3 66492494 66492528 -151544630 + (TTA)n Simple_repeat Simple_repeat 2 35 0 487 288 110 11 chr3 66492535 66492726 -151544432 - MIR SINE MIR -37 225 16 31 44 0 0 chr3 66492939 66492984 -151544174 + AT_rich Low_complexity Low_complexity 1 45 0 2273 104 3 0 chr3 66493262 66493569 -151543589 - AluSx SINE Alu -4 308 1 434 335 135 20 chr3 66493717 66494066 -151543092 + Tigger8 DNA MER2_type 7 395 -271 244 204 0 19 chr3 66495043 66495097 -151542061 - MIR SINE MIR -10 252 200 467 281 77 66 chr3 66495113 66495432 -151541726 + MLT1J LTR MaLR 4 331 -180 2034 146 0 7 chr3 66495432 66495741 -151541417 - AluJb SINE Alu -5 307 1 467 281 77 66 chr3 66495741 66495925 -151541233 + MLT1J LTR MaLR 331 511 0 362 291 121 21 chr3 66495929 66496070 -151541088 - MIR SINE MIR -79 183 29 557 284 48 26 chr3 66497152 66497420 -151539738 + MLT1I LTR MaLR 136 409 0 21 0 0 0 chr3 66497665 66497686 -151539472 + AT_rich Low_complexity Low_complexity 1 21 0 1138 53 0 0 chr3 66497715 66497847 -151539311 - AluY SINE Alu -179 132 1 339 245 157 10 chr3 66497949 66498051 -151539107 - L2 LINE L2 -15 3298 3182 522 207 127 7 chr3 66498080 66498230 -151538928 - MIR SINE MIR -9 253 86 277 154 173 0 chr3 66498213 66498265 -151538893 + L2 LINE L2 3199 3259 -54 * 197 194 242 16 chr3 66498290 66498352 -151538806 - MIR SINE MIR -138 124 49 291 28 0 0 chr3 66499122 66499158 -151538000 + (TG)n Simple_repeat Simple_repeat 1 36 0 217 311 0 0 chr3 66500303 66500364 -151536794 + MIR SINE MIR 19 79 -129 239 292 53 87 chr3 66500798 66501062 -151536096 - L2 LINE L2 -212 3060 2806 1220 298 102 13 chr3 66501721 66502242 -151534916 + Tigger8 DNA MER2_type 26 592 -74 529 255 85 0 chr3 66502997 66503138 -151534020 - MIR SINE MIR -16 246 94 792 294 86 7 chr3 66503142 66503411 -151533747 - LTR16C LTR ERVL 0 491 202 30 0 0 0 chr3 66503424 66503454 -151533704 + AT_rich Low_complexity Low_complexity 1 30 0 3039 141 28 10 chr3 66503454 66503801 -151533357 - L1MB3 LINE L1 -1 6182 5822 1654 152 0 33 chr3 66503801 66504077 -151533081 - AluSx SINE Alu -4 308 42 3039 141 28 10 chr3 66504077 66504226 -151532932 - L1MB3 LINE L1 -361 5822 5677 201 272 222 12 chr3 66504399 66504480 -151532678 - MIR SINE MIR -163 99 2 774 259 49 11 chr3 66505223 66505539 -151531619 - MLT1I LTR MaLR -2 407 46 513 265 39 64 chr3 66505791 66505995 -151531163 - MIR SINE MIR -16 246 48 1851 162 0 16 chr3 66507839 66508142 -151529016 - AluJo SINE Alu -14 298 1 570 301 83 5 chr3 66508872 66509088 -151528070 - MIR SINE MIR -10 252 20 1587 270 75 41 chr3 66509252 66509548 -151527610 + MER115 DNA AcHobo 32 317 -376 1265 198 4 39 chr3 66509548 66509593 -151527565 + MER58A DNA MER1_type 1 46 -2374 2511 67 0 0 chr3 66509593 66509892 -151527266 - AluY SINE Alu -12 299 1 1265 198 4 39 chr3 66509892 66510078 -151527080 + MER58A DNA MER1_type 46 224 0 1587 270 75 41 chr3 66510078 66510411 -151526747 + MER115 DNA AcHobo 317 682 -11 391 223 32 102 chr3 66510545 66510642 -151526516 + L1ME3A LINE L1 6015 6098 -72 2184 116 0 0 chr3 66510642 66510935 -151526223 + AluSx SINE Alu 1 293 -19 391 223 32 102 chr3 66510935 66510994 -151526164 + L1ME3A LINE L1 6098 6160 -10 40 73 0 0 chr3 66510995 66511077 -151526081 + AT_rich Low_complexity Low_complexity 1 82 0 592 261 66 78 chr3 66511655 66511758 -151525400 + LTR16C LTR ERVL 238 341 -150 2282 102 0 3 chr3 66511758 66512071 -151525087 + AluSx SINE Alu 1 312 0 592 261 66 78 chr3 66512071 66512224 -151524934 + LTR16C LTR ERVL 341 491 0 681 312 73 42 chr3 66512869 66513351 -151523807 - L2 LINE L2 -289 2983 2474 1070 244 20 62 chr3 66513393 66513745 -151523413 - MER102b DNA MER1_type -1 340 4 2254 77 3 32 chr3 66514414 66514726 -151522432 + AluY SINE Alu 1 303 -8 248 387 45 0 chr3 66515790 66515901 -151521257 + L2 LINE L2 3157 3272 0 303 266 42 63 chr3 66515954 66516097 -151521061 - MER103 DNA DNA -9 157 18 1786 163 3 7 chr3 66516164 66516464 -151520694 + AluJb SINE Alu 1 299 -13 27 61 0 15 chr3 66516643 66516671 -151520487 + AT_rich Low_complexity Low_complexity 1 28 -37 713 198 8 0 chr3 66516671 66516792 -151520366 - FLAM_A SINE Alu -11 122 1 27 61 0 15 chr3 66516792 66516829 -151520329 + AT_rich Low_complexity Low_complexity 28 65 0 708 129 0 2 chr3 66516838 66517079 -151520079 + AluSx SINE Alu 1 299 -13 812 228 75 126 chr3 66517222 66517784 -151519374 - MLT1H LTR MaLR 0 549 17 499 195 11 0 chr3 66518024 66518111 -151519047 - FRAM/FAM SINE Alu -91 85 1 2477 59 0 16 chr3 66518116 66518423 -151518735 - AluY SINE Alu -9 302 1 362 205 57 33 chr3 66518491 66518613 -151518545 + L1ME4a LINE L1 5995 6119 -2 353 276 67 72 chr3 66518919 66519220 -151517938 + L1M4 LINE L1 3087 3388 -2758 1575 183 3 20 chr3 66519220 66519521 -151517637 - AluJo SINE Alu -16 296 1 353 276 67 72 chr3 66519521 66519700 -151517458 + L1M4 LINE L1 3388 3707 -2439 524 259 118 30 chr3 66520112 66520145 -151517013 - L1ME4a LINE L1 -3 6118 6089 3609 116 16 2 chr3 66520145 66520635 -151516523 - LOR1a LTR ERV1 0 497 1 524 259 118 30 chr3 66520635 66520864 -151516294 - L1ME4a LINE L1 -32 6089 5833 584 311 59 49 chr3 66521310 66521615 -151515543 - MLT1H LTR MaLR -118 431 124 885 284 52 95 chr3 66521763 66522246 -151514912 - MLT1K LTR MaLR -124 464 3 383 362 73 14 chr3 66522299 66522517 -151514641 - MIR SINE MIR -13 249 19 812 238 66 6 chr3 66522911 66523092 -151514066 + MER117 DNA MER1_type 4 195 -2 182 348 84 32 chr3 66525078 66525328 -151511830 + L2 LINE L2 2713 2975 -339 220 286 0 20 chr3 66525486 66525535 -151511623 + MIR SINE MIR 31 78 -184 1217 167 13 34 chr3 66525554 66525793 -151511365 - AluJo SINE Alu -15 297 64 367 239 117 32 chr3 66526499 66526687 -151510471 - Charlie7 DNA MER1_type -48 2564 2361 * 776 295 105 0 chr3 66526685 66526970 -151510188 - Charlie7 DNA MER1_type -2210 402 88 434 342 19 27 chr3 66527134 66527394 -151509764 - MLT1I LTR MaLR -7 402 145 747 292 38 29 chr3 66527580 66527820 -151509338 - MIR SINE MIR -11 251 10 1826 122 0 4 chr3 66527956 66528210 -151508948 - AluJo SINE Alu -26 286 34 225 94 0 0 chr3 66530175 66530207 -151506951 + (TCCC)n Simple_repeat Simple_repeat 4 35 0 2157 118 0 0 chr3 66530214 66530510 -151506648 - AluSx SINE Alu -16 296 1 1453 178 55 93 chr3 66530894 66531260 -151505898 - MLT1B LTR MaLR -38 352 1 833 136 16 8 chr3 66531323 66531442 -151505716 + FLAM_C SINE Alu 1 121 -17 375 60 0 0 chr3 66531442 66531492 -151505666 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 1718 143 33 33 chr3 66531568 66531869 -151505289 - AluJb SINE Alu -11 301 1 392 219 26 53 chr3 66531914 66532028 -151505130 - MLT1H LTR MaLR -13 536 426 551 264 162 33 chr3 66532609 66532942 -151504216 + MLT1L LTR MaLR 218 593 -22 213 39 0 0 chr3 66533168 66533194 -151503964 + (A)n Simple_repeat Simple_repeat 1 26 0 1137 192 49 0 chr3 66535230 66535433 -151501725 + MER20 DNA MER1_type 3 215 -4 488 289 173 10 chr3 66535835 66536043 -151501115 - MIR SINE MIR -10 252 11 246 256 24 49 chr3 66537230 66537312 -151499846 - MLT1K LTR MaLR -325 263 184 2318 87 0 37 chr3 66537824 66538146 -151499012 - AluY SINE Alu -1 310 1 1772 175 23 10 chr3 66538272 66538575 -151498583 + AluJb SINE Alu 1 307 -5 665 222 38 54 chr3 66540123 66540308 -151496850 - MIR SINE MIR -59 203 22 390 211 60 111 chr3 66540327 66540438 -151496720 - MER113 DNA MER1_type? -13 508 410 1899 136 10 36 chr3 66540438 66540747 -151496411 - AluJo SINE Alu -11 301 1 390 211 60 111 chr3 66540747 66540834 -151496324 - MER113 DNA MER1_type? -111 410 320 406 262 185 4 chr3 66541024 66541169 -151495989 + MIR SINE MIR 11 177 -31 266 247 104 13 chr3 66541917 66541994 -151495164 - L2 LINE L2 -42 3271 3188 198 0 0 0 chr3 66542071 66542093 -151495065 + (T)n Simple_repeat Simple_repeat 1 22 0 322 269 130 19 chr3 66542581 66542689 -151494469 + MIR SINE MIR 19 138 -70 198 167 0 0 chr3 66543467 66543503 -151493655 + (TCCA)n Simple_repeat Simple_repeat 4 39 0 256 254 15 15 chr3 66543588 66543655 -151493503 + MIR SINE MIR 28 94 -168 343 273 192 12 chr3 66543655 66543827 -151493331 + Charlie8 DNA MER1_type 76 256 -2161 189 74 0 0 chr3 66543952 66543979 -151493179 + (GA)n Simple_repeat Simple_repeat 1 27 0 2160 118 0 16 chr3 66543998 66544312 -151492846 - AluSc SINE Alu 0 309 1 551 252 126 0 chr3 66545933 66546068 -151491090 - MIR SINE MIR 0 262 111 285 261 36 54 chr3 66546219 66546330 -151490828 + MIR3 SINE MIR 48 156 -52 1933 184 40 51 chr3 66546360 66546830 -151490328 - MLT1C LTR MaLR 0 467 1 788 258 67 10 chr3 66546922 66547131 -151490027 + MIR SINE MIR 2 222 -40 266 228 0 18 chr3 66547961 66548018 -151489140 + MIR SINE MIR 13 68 -194 525 132 0 0 chr3 66548019 66548095 -151489063 + AluJ/FRAM SINE Alu 220 295 -17 504 289 58 0 chr3 66548183 66548339 -151488819 + MIR SINE MIR 98 262 0 374 282 119 8 chr3 66548735 66548930 -151488228 + MIR SINE MIR 45 260 -2 23 0 0 0 chr3 66549454 66549477 -151487681 + AT_rich Low_complexity Low_complexity 1 23 0 376 159 0 0 chr3 66549490 66549553 -151487605 - L1MA10 LINE L1 -36 6298 6236 200 291 88 52 chr3 66549810 66550061 -151487097 + L2 LINE L2 2859 3118 -195 690 196 114 33 chr3 66550347 66550531 -151486627 + MIR SINE MIR 39 237 -25 299 269 96 0 chr3 66550786 66550890 -151486268 - L2 LINE L2 -222 3050 2937 611 179 36 0 chr3 66550972 66551084 -151486074 - MER5B DNA MER1_type -62 116 1 289 226 236 19 chr3 66551091 66551197 -151485961 + MER5A DNA MER1_type 55 183 -6 339 329 44 13 chr3 66551207 66551365 -151485793 - MER5A DNA MER1_type -21 168 6 1036 162 29 17 chr3 66552098 66552271 -151484887 - MER45A DNA AcHobo 0 178 4 568 183 144 100 chr3 66552468 66552562 -151484596 + L1ME LINE L1 5524 5612 -509 2140 151 0 0 chr3 66552562 66552874 -151484284 + AluSx SINE Alu 1 312 0 568 183 144 100 chr3 66552874 66553008 -151484150 + L1ME LINE L1 5612 5762 -359 405 109 0 0 chr3 66553066 66553130 -151484028 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 1954 139 59 0 chr3 66553279 66553566 -151483592 - AluSx SINE Alu -8 304 1 22 0 0 0 chr3 66553991 66554013 -151483145 + AT_rich Low_complexity Low_complexity 1 22 0 1656 92 72 0 chr3 66554013 66554262 -151482896 - L1MA2 LINE L1 -4 6300 6034 24 77 0 0 chr3 66554454 66554506 -151482652 + AT_rich Low_complexity Low_complexity 1 52 0 641 255 129 87 chr3 66554671 66555028 -151482130 + L3 LINE CR1 891 1262 -315 630 227 162 0 chr3 66555042 66555196 -151481962 - MER5A DNA MER1_type -2 187 9 1138 185 35 0 chr3 66555213 66555413 -151481745 + MER3 DNA MER1_type 2 208 -1 1325 191 19 0 chr3 66555653 66555868 -151481290 + MER20 DNA MER1_type 1 219 0 496 295 65 60 chr3 66555868 66556221 -151480937 + L1MC4a LINE L1 5261 5615 -2193 2709 154 37 18 chr3 66556221 66556537 -151480621 + MER66B LTR ERV1 1 330 -156 2420 116 30 22 chr3 66556537 66556898 -151480260 + THE1B LTR MaLR 1 364 0 2709 154 37 18 chr3 66556898 66557035 -151480123 + MER66B LTR ERV1 330 463 -23 1576 211 71 40 chr3 66558411 66558961 -151478197 - L1MC5 LINE L1 -95 7866 7300 199 333 0 33 chr3 66559709 66559769 -151477389 + MIR3 SINE MIR 14 71 -137 251 88 0 0 chr3 66559775 66559809 -151477349 + MER53 DNA DNA 3 36 -153 1476 206 31 10 chr3 66559809 66560101 -151477057 + AluJo SINE Alu 1 298 -14 362 160 0 13 chr3 66560102 66560177 -151476981 + (TA)n Simple_repeat Simple_repeat 1 74 0 866 174 12 0 chr3 66560185 66560346 -151476812 + MER53 DNA DNA 27 189 0 341 267 56 0 chr3 66560364 66560454 -151476704 + MIR3 SINE MIR 83 177 -31 1197 237 89 67 chr3 66560571 66561065 -151476093 + MLT1J LTR MaLR 7 511 0 290 259 94 70 chr3 66561086 66561287 -151475871 + L1MC4a LINE L1 5757 5962 -1846 1098 169 0 30 chr3 66561350 66561551 -151475607 - AluJb SINE Alu -1 311 117 217 0 61 0 chr3 66562016 66562049 -151475109 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 595 196 0 0 chr3 66562258 66562360 -151474798 - FLAM_A SINE Alu -4 138 37 866 268 178 9 chr3 66562385 66562806 -151474352 - L1ME LINE L1 -297 5824 5333 2101 141 133 18 chr3 66562928 66563312 -151473846 - MSTA LTR MaLR 0 428 1 3967 171 113 11 chr3 66563414 66564249 -151472909 - L1MB8 LINE L1 0 6178 5259 393 256 71 143 chr3 66565033 66565315 -151471843 - L2 LINE L2 0 3272 3038 2096 138 3 0 chr3 66565315 66565612 -151471546 - AluSx SINE Alu -14 298 1 393 256 71 143 chr3 66565612 66565810 -151471348 - L2 LINE L2 -234 3038 2827 230 257 81 14 chr3 66567228 66567302 -151469856 + MIR SINE MIR 103 181 -81 272 273 36 45 chr3 66567616 66567726 -151469432 - MIR SINE MIR -44 218 110 339 309 111 0 chr3 66568115 66568241 -151468917 - MER117 DNA MER1_type -5 192 53 340 271 25 57 chr3 66570111 66570164 -151466994 + L2 LINE L2 3150 3203 -69 2539 171 31 5 chr3 66570164 66570579 -151466579 - MSTB LTR MaLR 0 426 1 340 271 25 57 chr3 66570579 66570647 -151466511 + L2 LINE L2 3203 3267 -5 372 100 0 0 chr3 66571669 66571719 -151465439 - MADE1 DNA Mariner 0 80 31 227 77 0 26 chr3 66572132 66572171 -151464987 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 255 290 97 0 chr3 66572190 66572283 -151464875 - MER5B DNA MER1_type -70 108 7 232 367 34 34 chr3 66572996 66573143 -151464015 + L3 LINE CR1 1384 1530 -47 1834 199 0 3 chr3 66573317 66573628 -151463530 + MLT1A1 LTR MaLR 56 365 0 958 228 47 9 chr3 66573698 66573930 -151463228 + L1M4 LINE L1 4800 5040 -1106 894 117 36 0 chr3 66574064 66574201 -151462957 + L1PA15 LINE L1 6023 6164 -1 547 296 82 9 chr3 66574957 66575177 -151461981 - MIR SINE MIR -6 256 21 3317 118 31 44 chr3 66575306 66575849 -151461309 + L1MB3 LINE L1 5648 6183 0 3849 264 102 26 chr3 66575935 66577597 -151459561 - L2 LINE L2 0 3313 1246 183 204 23 23 chr3 66577602 66577646 -151459512 - L2 LINE L2 -3009 305 262 265 209 33 0 chr3 66577796 66577887 -151459271 + CT-rich Low_complexity Low_complexity 4 97 0 1354 227 0 12 chr3 66578023 66578265 -151458893 - MER8 DNA MER2_type 0 239 1 406 351 108 5 chr3 66579219 66579404 -151457754 + MIR SINE MIR 12 215 -47 753 232 39 22 chr3 66579409 66579590 -151457568 + MER20 DNA MER1_type 5 188 -31 2330 105 0 0 chr3 66579864 66580159 -151456999 - AluSg SINE Alu -15 295 1 2102 244 76 26 chr3 66580400 66580965 -151456193 - MLT1E LTR MaLR 0 593 1 501 229 46 8 chr3 66581054 66581185 -151455973 + L2 LINE L2 3178 3313 0 753 271 69 14 chr3 66581950 66582168 -151454990 + MIR SINE MIR 11 240 -22 2219 84 0 3 chr3 66582245 66582552 -151454606 + AluY SINE Alu 1 306 0 593 269 28 16 chr3 66582651 66582833 -151454325 + MER58A DNA MER1_type 1 67 -40 897 147 55 12 chr3 66582875 66583038 -151454120 + MER58B DNA MER1_type 172 341 0 265 58 39 39 chr3 66584172 66584224 -151452934 + (GAAA)n Simple_repeat Simple_repeat 1 52 0 555 350 114 29 chr3 66584447 66585201 -151451957 - L2 LINE L2 0 3272 2325 2179 223 102 15 chr3 66585245 66585783 -151451375 - MLT1E LTR MaLR 0 593 9 3702 39 0 0 chr3 66586078 66586492 -151450666 + L1PA5 LINE L1 5732 6145 -9 809 264 70 9 chr3 66586515 66586742 -151450416 - MIR SINE MIR 0 262 22 1356 181 14 0 chr3 66587043 66587258 -151449900 + MER20 DNA MER1_type 1 218 -1 1763 169 33 0 chr3 66587993 66588294 -151448864 - AluJb SINE Alu -1 311 1 516 338 70 14 chr3 66589463 66589676 -151447482 - MIR SINE MIR -14 248 24 557 174 52 35 chr3 66589683 66589798 -151447360 - MER58A DNA MER1_type 0 224 108 333 239 78 49 chr3 66589979 66590121 -151447037 - MIR SINE MIR -80 182 37 932 259 37 4 chr3 66591316 66591559 -151445599 + MIR SINE MIR 12 262 0 363 259 107 46 chr3 66592177 66592276 -151444882 - MIR SINE MIR -74 188 78 2607 157 41 0 chr3 66592276 66592691 -151444467 - MSTB1 LTR MaLR 0 432 1 363 259 107 46 chr3 66592691 66592722 -151444436 - MIR SINE MIR -184 78 50 2014 88 110 0 chr3 66592745 66593017 -151444141 - AluY SINE Alu -9 302 1 282 306 37 127 chr3 66593097 66593309 -151443849 - L2 LINE L2 -93 3179 3004 2107 143 0 6 chr3 66593309 66593623 -151443535 + AluSx SINE Alu 1 312 0 282 306 37 127 chr3 66593623 66593733 -151443425 - L2 LINE L2 -268 3004 2886 224 189 0 0 chr3 66594848 66594885 -151442273 + polypurine Low_complexity Low_complexity 3 39 0 366 318 47 0 chr3 66594921 66595050 -151442108 - MIR3 SINE MIR -8 200 66 561 183 0 28 chr3 66596517 66596659 -151440499 + GA-rich Low_complexity Low_complexity 3 140 0 1120 203 24 61 chr3 66596837 66597167 -151439991 + L1MB4 LINE L1 5863 6180 0 246 248 77 95 chr3 66597138 66597177 -151439981 + L1ME4a LINE L1 5903 5941 -180 * 371 143 104 0 chr3 66597177 66597254 -151439904 + L1MB8 LINE L1 6093 6177 -1 246 248 77 95 chr3 66597254 66597436 -151439722 + L1ME4a LINE L1 5941 6120 -1 481 270 206 0 chr3 66597638 66597827 -151439331 + MIR SINE MIR 8 235 -27 2098 178 18 0 chr3 66597906 66598248 -151438910 + MER7A DNA MER2_type 1 346 0 1421 202 88 0 chr3 66598274 66598571 -151438587 + MER58B DNA MER1_type 1 323 -18 1877 165 57 34 chr3 66598665 66599112 -151438046 + MER89 LTR ERV1 1 557 -2 3487 246 85 66 chr3 66599136 66600553 -151436605 + MER89-int LTR ERV1 28 1472 -5329 244 138 14 10 chr3 66600559 66600660 -151436498 + Alu SINE Alu 38 213 -89 753 100 0 0 chr3 66600771 66600871 -151436287 + L1PA16 LINE L1 6058 6157 -9 25 0 0 0 chr3 66600877 66600902 -151436256 + AT_rich Low_complexity Low_complexity 1 25 0 8823 214 66 34 chr3 66601242 66602381 -151434777 + MER89-int LTR ERV1 4744 5846 -955 2456 75 0 0 chr3 66602381 66602675 -151434483 - AluSc SINE Alu -15 294 1 8823 214 66 34 chr3 66602675 66603247 -151433911 + MER89-int LTR ERV1 5846 6398 -403 207 0 0 0 chr3 66603247 66603270 -151433888 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8823 214 66 34 chr3 66603270 66603288 -151433870 + MER89-int LTR ERV1 6398 6414 -387 2380 98 3 0 chr3 66603288 66603594 -151433564 - AluSx SINE Alu -5 307 1 8823 214 66 34 chr3 66603594 66603857 -151433301 + MER89-int LTR ERV1 6414 6801 0 340 207 12 0 chr3 66603857 66603939 -151433219 + MER89 LTR ERV1 1 83 -476 * 1257 209 124 30 chr3 66603920 66604250 -151432908 + MER89 LTR ERV1 199 559 0 525 282 32 36 chr3 66604977 66605146 -151432012 - MIR SINE MIR 0 262 93 1865 171 3 3 chr3 66605146 66605456 -151431702 + AluJb SINE Alu 1 310 -2 525 282 32 36 chr3 66605456 66605538 -151431620 - MIR SINE MIR -169 93 12 751 221 0 0 chr3 66606053 66606184 -151430974 + FLAM_A SINE Alu 3 133 0 4701 20 0 0 chr3 66606391 66606899 -151430259 + L1PA2 LINE L1 5648 6155 0 1397 189 30 13 chr3 66607204 66607506 -151429652 - MER33 DNA MER1_type -2 322 16 878 269 37 0 chr3 66607705 66607950 -151429208 - MIR SINE MIR -6 256 3 2088 91 3 28 chr3 66608076 66608363 -151428795 - AluSg SINE Alu -30 280 1 572 77 0 0 chr3 66608363 66608441 -151428717 - L1PA15 LINE L1 -125 6040 5963 1011 80 0 0 chr3 66608986 66609124 -151428034 + (TTCC)n Simple_repeat Simple_repeat 3 140 0 277 263 85 25 chr3 66609291 66609409 -151427749 + Charlie8 DNA MER1_type 2 126 -2291 249 182 50 10 chr3 66609417 66609516 -151427642 + (TA)n Simple_repeat Simple_repeat 2 104 0 2407 213 152 25 chr3 66610025 66610731 -151426427 - LTR50 LTR ERVL 0 795 1 1778 185 115 6 chr3 66610936 66611293 -151425865 + MSTD LTR MaLR 1 396 0 434 280 0 20 chr3 66611325 66611425 -151425733 + MER58A DNA MER1_type 1 98 -9 540 113 0 12 chr3 66611488 66611568 -151425590 + MSTB1 LTR MaLR 354 432 0 387 69 0 0 chr3 66611569 66611627 -151425531 - L1 LINE L1 -1125 5021 4964 331 190 0 0 chr3 66611893 66611951 -151425207 + L1ME LINE L1 5586 5643 -478 417 244 118 0 chr3 66612608 66612727 -151424431 + L2 LINE L2 3179 3311 -2 464 129 0 0 chr3 66612825 66612887 -151424271 + MER58A DNA MER1_type 37 98 -9 288 146 0 0 chr3 66612952 66613000 -151424158 + MSTB1 LTR MaLR 356 403 -29 224 179 0 0 chr3 66613203 66613242 -151423916 + L2 LINE L2 3228 3266 -6 181 343 15 67 chr3 66614210 66614344 -151422814 - L2 LINE L2 -30 3242 3116 941 222 17 2 chr3 66614363 66614605 -151422553 - AluJo SINE Alu -21 291 1 374 94 16 0 chr3 66614732 66614796 -151422362 + (TG)n Simple_repeat Simple_repeat 1 65 0 321 26 0 0 chr3 66614795 66614833 -151422325 + (GA)n Simple_repeat Simple_repeat 1 38 0 * 201 263 253 0 chr3 66615334 66615433 -151421725 + L2 LINE L2 3142 3265 -7 351 141 0 0 chr3 66617410 66617488 -151419670 + (CA)n Simple_repeat Simple_repeat 2 79 0 207 284 61 47 chr3 66618030 66618178 -151418980 - MIR3 SINE MIR -36 172 23 183 80 0 0 chr3 66618308 66618333 -151418825 + (GGGAGA)n Simple_repeat Simple_repeat 1 25 0 405 298 45 58 chr3 66619044 66619286 -151417872 - MLT1K LTR MaLR -160 428 190 1453 218 64 121 chr3 66619674 66620344 -151416814 - L1ME3A LINE L1 -7 6163 5532 650 284 82 33 chr3 66620409 66620652 -151416506 - MIR SINE MIR 0 262 8 2218 89 0 11 chr3 66621196 66621478 -151415680 - AluSx SINE Alu -33 279 1 486 125 0 50 chr3 66621753 66621833 -151415325 - MIR SINE MIR -140 122 47 187 294 44 0 chr3 66621880 66621948 -151415210 + L2 LINE L2 2907 2977 -295 2090 128 0 0 chr3 66622885 66623194 -151413964 + AluSx SINE Alu 1 309 0 261 353 42 0 chr3 66623942 66624061 -151413097 - L2 LINE L2 -8 3264 3141 258 317 81 31 chr3 66624034 66624195 -151412963 + L3b LINE CR1 1329 1497 -86 * 773 301 107 27 chr3 66624269 66624823 -151412335 - L1ME4a LINE L1 -2 6119 5522 276 143 0 0 chr3 66625297 66625339 -151411819 - L2 LINE L2 0 3313 3272 371 274 94 17 chr3 66625445 66625562 -151411596 + MIR3 SINE MIR 15 140 -68 204 213 0 12 chr3 66625768 66625861 -151411297 + (TG)n Simple_repeat Simple_repeat 1 91 0 2293 171 53 27 chr3 66626479 66626930 -151410228 - MER31B LTR ERV1 0 466 4 456 277 43 22 chr3 66626996 66627180 -151409978 + MIR SINE MIR 71 258 -4 1213 157 119 0 chr3 66627185 66627395 -151409763 - MER46A DNA MER2_type -1 235 1 1676 155 0 22 chr3 66627665 66627943 -151409215 + AluJb SINE Alu 11 282 -30 212 149 0 64 chr3 66627977 66628071 -151409087 + (TATATG)n Simple_repeat Simple_repeat 2 89 0 311 202 0 54 chr3 66628093 66628222 -151408936 + (TA)n Simple_repeat Simple_repeat 2 123 0 1573 195 104 30 chr3 66628286 66628650 -151408508 - L1MCa LINE L1 -5713 713 323 544 283 58 11 chr3 66629171 66629362 -151407796 + MIR SINE MIR 15 214 -48 319 244 24 0 chr3 66629709 66629791 -151407367 - L2 LINE L2 -194 3078 2995 189 0 0 0 chr3 66630299 66630320 -151406838 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1019 157 0 0 chr3 66630320 66630467 -151406691 - AluSg/x SINE Alu -32 280 134 1971 150 43 40 chr3 66630505 66630879 -151406279 + THE1C LTR MaLR 1 375 0 767 246 136 9 chr3 66632087 66632315 -151404843 + MIR SINE MIR 3 259 -3 1076 286 79 44 chr3 66632450 66632530 -151404628 - L2 LINE L2 0 3313 3237 2403 86 0 7 chr3 66632530 66632831 -151404327 - AluY SINE Alu -12 299 1 1076 286 79 44 chr3 66632831 66633229 -151403929 - L2 LINE L2 -76 3237 2818 267 161 113 0 chr3 66633425 66633487 -151403671 + Tigger5 DNA MER2_type 6 74 -2249 * 1147 109 24 0 chr3 66633485 66633650 -151403508 + Tigger5 DNA MER2_type 2155 2323 0 616 325 31 19 chr3 66634344 66634661 -151402497 - MLT1H LTR MaLR -2 547 227 1228 256 167 5 chr3 66634665 66634778 -151402380 - L1MEc LINE L1 -5877 519 426 1714 177 152 18 chr3 66634778 66635179 -151401979 - MSTB2 LTR MaLR -2 455 1 1228 256 167 5 chr3 66635179 66635479 -151401679 - L1MEc LINE L1 -5970 426 39 735 225 57 35 chr3 66635479 66635706 -151401452 - MLT1H LTR MaLR -311 238 7 420 314 69 0 chr3 66635765 66635924 -151401234 - MIR SINE MIR -4 258 89 1324 240 31 9 chr3 66636258 66636579 -151400579 + MER93a LTR ERV1 75 402 0 388 252 19 10 chr3 66636848 66636951 -151400207 + MLT1I LTR MaLR 29 132 -277 557 228 46 30 chr3 66636984 66637186 -151399972 + MLT1I LTR MaLR 243 407 -2 653 202 32 0 chr3 66637359 66637483 -151399675 + MER63 DNA MER1_type 1 754 -308 243 292 0 0 chr3 66637489 66637554 -151399604 + MER63 DNA MER1_type 987 1051 -11 457 314 48 14 chr3 66637589 66637799 -151399359 - HAL1 LINE L1 -861 1646 1430 708 257 0 7 chr3 66637824 66637972 -151399186 + MER93a LTR ERV1 222 368 -34 708 203 0 0 chr3 66638176 66638304 -151398854 - FLAM_A SINE Alu -5 128 1 4091 156 30 9 chr3 66638344 66639023 -151398135 - L1MB1 LINE L1 0 6168 5476 835 184 7 0 chr3 66639023 66639158 -151398000 - FRAM SINE Alu -21 155 20 1103 143 0 66 chr3 66639199 66639504 -151397654 - L1MB1 LINE L1 -683 5485 5197 1790 158 39 4 chr3 66639517 66639796 -151397362 + AluJb SINE Alu 1 289 -23 405 214 34 0 chr3 66639891 66639980 -151397178 - L2 LINE L2 -2 3311 3220 654 259 119 51 chr3 66640072 66640365 -151396793 + L2 LINE L2 2999 3311 -2 483 305 96 75 chr3 66640710 66641044 -151396114 + L2 LINE L2 2929 3269 -3 239 204 19 19 chr3 66641239 66641293 -151395865 + Charlie8 DNA MER1_type 1375 1428 -989 201 154 0 0 chr3 66641355 66641394 -151395764 + (TG)n Simple_repeat Simple_repeat 2 40 0 209 229 164 0 chr3 66641417 66641478 -151395680 - MIR SINE MIR -111 151 81 267 322 71 44 chr3 66643099 66643282 -151393876 + MIR3 SINE MIR 15 202 -6 265 331 108 7 chr3 66643599 66643747 -151393411 - MIR SINE MIR -20 242 80 200 328 62 0 chr3 66643824 66643888 -151393270 - MIR SINE MIR -177 85 18 411 59 0 0 chr3 66643920 66643971 -151393187 + L1PA12 LINE L1 5864 5914 -254 242 238 10 69 chr3 66644409 66644510 -151392648 + LTR67 LTR ERVL 457 551 -6 * 245 250 15 15 chr3 66644443 66644511 -151392647 + MLT1K LTR MaLR 516 583 -5 1007 124 25 75 chr3 66644614 66644815 -151392343 - L1MB7 LINE L1 -9 6175 5985 201 133 0 0 chr3 66644914 66644944 -151392214 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 357 62 0 0 chr3 66644954 66645002 -151392156 + (TA)n Simple_repeat Simple_repeat 2 49 0 1913 134 40 22 chr3 66645373 66645694 -151391464 - L1MA4A LINE L1 -6 6297 5971 1391 139 10 0 chr3 66645809 66646017 -151391141 + MER2 DNA MER2_type 1 210 -135 351 0 0 0 chr3 66646133 66646172 -151390986 + (CA)n Simple_repeat Simple_repeat 2 40 0 1166 176 26 11 chr3 66646236 66646393 -151390765 + L1MA4 LINE L1 6022 6175 -125 2349 72 3 3 chr3 66646393 66646685 -151390473 + AluY SINE Alu 1 292 -19 387 60 0 0 chr3 66646686 66646736 -151390422 + (TA)n Simple_repeat Simple_repeat 1 50 0 225 0 0 0 chr3 66646735 66646760 -151390398 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 1166 176 26 11 chr3 66646736 66646872 -151390286 + L1MA4 LINE L1 6174 6297 -3 590 215 181 7 chr3 66647124 66647273 -151389885 - MER5A DNA MER1_type -6 183 9 498 243 13 97 chr3 66648187 66648413 -151388745 - MIR SINE MIR -3 259 53 353 296 10 20 chr3 66648438 66648536 -151388622 - MIR SINE MIR -86 122 26 330 67 0 0 chr3 66650129 66650174 -151386984 + (TG)n Simple_repeat Simple_repeat 2 46 0 318 247 32 11 chr3 66650466 66650559 -151386599 - MIR SINE MIR -70 192 98 769 220 31 0 chr3 66651092 66651251 -151385907 - MIR SINE MIR -96 166 3 1158 258 72 59 chr3 66651455 66651720 -151385438 - L1ME3A LINE L1 -235 5918 5658 1149 185 31 57 chr3 66651720 66651843 -151385315 - MER58A DNA MER1_type -2196 224 108 1985 135 7 0 chr3 66651843 66652147 -151385011 + AluSx SINE Alu 1 306 -6 1149 185 31 57 chr3 66652147 66652250 -151384908 - MER58A DNA MER1_type -2312 108 4 1158 258 72 59 chr3 66652250 66652436 -151384722 - L1ME3A LINE L1 -495 5658 5476 387 0 0 0 chr3 66652436 66652479 -151384679 + (TG)n Simple_repeat Simple_repeat 1 43 0 1158 258 72 59 chr3 66652479 66652851 -151384307 - L1ME3A LINE L1 -677 5476 5083 674 290 170 36 chr3 66652870 66653711 -151383447 - L1ME3A LINE L1 -1869 4260 3307 317 292 211 22 chr3 66653792 66654104 -151383054 - L1ME3A LINE L1 -5103 1016 646 452 235 106 8 chr3 66654369 66654501 -151382657 - L1ME3A LINE L1 -5972 147 3 307 329 81 20 chr3 66655777 66655926 -151381232 + MIR3 SINE MIR 30 187 -21 253 79 0 26 chr3 66655987 66656025 -151381133 + MLT1I LTR MaLR 370 406 -3 410 172 13 166 chr3 66656027 66656184 -151380974 - MIR SINE MIR -25 237 105 819 144 38 30 chr3 66656270 66656402 -151380756 - FLAM_A SINE Alu 0 133 1 239 217 29 0 chr3 66656640 66656709 -151380449 + A-rich Low_complexity Low_complexity 3 73 0 849 161 15 7 chr3 66656886 66657023 -151380135 - AluJo SINE Alu -173 139 2 540 282 97 19 chr3 66657163 66657369 -151379789 + MIR SINE MIR 14 235 -27 240 86 0 0 chr3 66657676 66657711 -151379447 + (T)n Simple_repeat Simple_repeat 1 35 0 204 246 0 0 chr3 66657793 66657862 -151379296 + CT-rich Low_complexity Low_complexity 1 69 0 264 312 32 0 chr3 66657899 66657992 -151379166 - MIR SINE MIR -75 187 92 525 296 108 8 chr3 66658021 66658261 -151378897 + MARNA DNA Mariner 122 385 -201 2098 135 3 0 chr3 66658262 66658558 -151378600 + AluJb SINE Alu 1 297 -15 2434 77 0 6 chr3 66658564 66658877 -151378281 + AluY SINE Alu 1 311 0 198 71 0 0 chr3 66658913 66658941 -151378217 + (TA)n Simple_repeat Simple_repeat 1 28 0 2423 159 49 9 chr3 66659114 66659580 -151377578 - L1MB7 LINE L1 -11 6173 5689 744 134 0 0 chr3 66659585 66659697 -151377461 + L1MB8 LINE L1 5752 5863 -311 897 164 152 17 chr3 66659799 66660048 -151377110 + L1MB8 LINE L1 5856 6137 -43 255 289 97 18 chr3 66660343 66660457 -151376701 + L2 LINE L2 3145 3267 -5 180 111 0 0 chr3 66660856 66660883 -151376275 + (T)n Simple_repeat Simple_repeat 1 27 0 2451 209 60 38 chr3 66663307 66663887 -151373271 + MLT1E LTR MaLR 1 593 0 288 273 0 0 chr3 66664564 66664630 -151372528 - MER63 DNA MER1_type -18 1044 979 318 207 0 0 chr3 66664635 66664693 -151372465 - MER63 DNA MER1_type -315 746 689 465 110 0 0 chr3 66664960 66665033 -151372125 + (TTCA)n Simple_repeat Simple_repeat 3 75 0 602 268 160 7 chr3 66665061 66665348 -151371810 - L2 LINE L2 -64 3249 2919 465 259 161 7 chr3 66665332 66665475 -151371683 - MIR SINE MIR -92 170 6 * 1686 144 19 81 chr3 66665480 66665800 -151371358 - AluJb SINE Alu -12 300 1 315 253 24 0 chr3 66665943 66666026 -151371132 + MER103 DNA DNA 73 157 -9 207 172 207 0 chr3 66667742 66667800 -151369358 + L2 LINE L2 3243 3312 -1 417 269 36 54 chr3 66668118 66668285 -151368873 - MIR SINE MIR -92 170 7 306 336 137 18 chr3 66668469 66668811 -151368347 - L2 LINE L2 -384 2930 2548 412 346 43 17 chr3 66670153 66670387 -151366771 - MIR SINE MIR -10 252 13 534 217 101 92 chr3 66671278 66671485 -151365673 + MER58C DNA MER1_type 7 215 0 2471 84 3 3 chr3 66671662 66671970 -151365188 - AluSp SINE Alu -5 308 1 598 198 62 57 chr3 66672614 66672791 -151364367 - MER20 DNA MER1_type 0 219 42 400 61 0 0 chr3 66673031 66673080 -151364078 + (TG)n Simple_repeat Simple_repeat 1 49 0 300 70 0 0 chr3 66673441 66673484 -151363674 + (TG)n Simple_repeat Simple_repeat 1 43 0 255 193 0 0 chr3 66673484 66673567 -151363591 + GA-rich Low_complexity Low_complexity 2 84 0 927 133 15 0 chr3 66675012 66675147 -151362011 - FLAM_C SINE Alu -6 137 1 207 0 0 0 chr3 66675794 66675817 -151361341 + (CAG)n Simple_repeat Simple_repeat 1 23 0 274 235 174 20 chr3 66675868 66675966 -151361192 - MIR SINE MIR -69 193 81 264 253 81 50 chr3 66676730 66676829 -151360329 + MIR SINE MIR 154 255 -7 236 306 59 12 chr3 66676877 66676962 -151360196 + L2 LINE L2 3137 3225 -47 260 171 1 98 chr3 66677057 66677174 -151359984 - AluSp/q SINE Alu -10 293 203 812 42 98 7 chr3 66677431 66677574 -151359584 - AluYa8 SINE Alu -154 156 1 450 197 177 20 chr3 66677747 66677894 -151359264 - MIR SINE MIR -14 248 79 433 328 149 33 chr3 66678089 66678324 -151358834 + L2 LINE L2 2236 2443 -829 2862 180 4 36 chr3 66678324 66678846 -151358312 - MLT1D LTR MaLR 0 505 1 433 328 149 33 chr3 66678846 66679538 -151357620 + L2 LINE L2 2443 3266 -6 1475 263 37 37 chr3 66679582 66679743 -151357415 - L1MD3 LINE L1 -13 7982 7822 2504 138 55 29 chr3 66679743 66680164 -151356994 + MSTB1 LTR MaLR 1 432 0 1475 263 37 37 chr3 66680164 66680458 -151356700 - L1MD3 LINE L1 -172 7823 7527 650 273 33 14 chr3 66680583 66680820 -151356338 - MIR SINE MIR -1 261 17 249 350 118 17 chr3 66681311 66681548 -151355610 - L2 LINE L2 -1019 2295 2035 192 97 0 0 chr3 66681573 66681604 -151355554 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 1322 149 50 9 chr3 66681779 66682000 -151355158 - MER30 DNA MER1_type 0 230 1 1129 186 23 36 chr3 66682756 66682977 -151354181 - MER20 DNA MER1_type -1 218 1 251 283 262 14 chr3 66682993 66683138 -151354020 + MER5A DNA MER1_type 9 189 0 398 242 159 15 chr3 66683158 66683290 -151353868 + MIR SINE MIR 2 152 -110 25 0 0 0 chr3 66684039 66684064 -151353094 + AT_rich Low_complexity Low_complexity 1 25 0 945 185 71 71 chr3 66684152 66684352 -151352806 - MER8 DNA MER2_type -1 238 36 2118 171 0 20 chr3 66684352 66684696 -151352462 - MER1B DNA MER1_type 0 337 1 945 185 71 71 chr3 66684696 66684733 -151352425 - MER8 DNA MER2_type -202 37 1 667 132 4 243 chr3 66684790 66685025 -151352133 + MER91B DNA MER1_type 12 190 0 1462 199 57 3 chr3 66685186 66685482 -151351676 + AluJo SINE Alu 1 312 0 2023 146 13 0 chr3 66685941 66686243 -151350915 - AluSx SINE Alu -6 306 1 3029 89 38 0 chr3 66686733 66687124 -151350034 + L1PA15 LINE L1 5753 6158 -7 402 281 133 0 chr3 66687200 66687328 -151349830 - MIR SINE MIR -73 189 45 663 182 36 0 chr3 66687429 66687539 -151349619 + MER81 DNA DNA 1 114 0 2290 105 0 10 chr3 66687719 66688033 -151349125 - AluY SINE Alu 0 311 1 276 125 0 0 chr3 66689776 66689816 -151347342 - L1MA9 LINE L1 -47 6265 6226 376 145 40 0 chr3 66690287 66690328 -151346830 - L1MA9 LINE L1 -38 6274 6236 2117 161 36 0 chr3 66690328 66690664 -151346494 - MER7A DNA MER2_type 0 346 1 376 145 40 0 chr3 66690664 66690698 -151346460 - L1MA9 LINE L1 -76 6236 6196 183 245 0 20 chr3 66691076 66691125 -151346033 - MIR SINE MIR -114 148 101 2580 90 3 0 chr3 66692078 66692410 -151344748 + L1PA13 LINE L1 5831 6163 0 270 313 0 0 chr3 66692448 66692515 -151344643 - L2 LINE L2 -5 3308 3242 25 0 0 0 chr3 66693028 66693053 -151344105 + AT_rich Low_complexity Low_complexity 1 25 0 961 93 7 7 chr3 66693594 66693733 -151343425 - AluY SINE Alu -171 140 2 764 188 27 16 chr3 66693733 66693919 -151343239 + L1M2 LINE L1 5304 5491 -821 633 232 0 0 chr3 66693919 66694031 -151343127 + FLAM_A SINE Alu 1 112 -30 273 297 41 48 chr3 66694137 66694282 -151342876 + L1M2 LINE L1 5604 5747 -565 9620 183 21 13 chr3 66694730 66694744 -151342414 - L1 LINE L1 -844 5190 5178 1833 161 3 3 chr3 66694744 66695087 -151342071 - AluSx SINE Alu 0 343 1 9620 183 21 13 chr3 66695087 66696223 -151340935 - L1 LINE L1 -856 5178 4015 2188 128 0 0 chr3 66696223 66696519 -151340639 - AluSx SINE Alu -16 296 1 9620 183 21 13 chr3 66696519 66697334 -151339824 - L1 LINE L1 -2019 4015 3208 297 239 18 71 chr3 66697512 66697625 -151339533 - L1 LINE L1 -5847 108 2 234 324 87 81 chr3 66698507 66698670 -151338488 - L2 LINE L2 -17 3255 3094 3830 62 0 2 chr3 66698670 66699134 -151338024 + L1PA12 LINE L1 5706 6168 0 234 324 87 81 chr3 66699134 66699303 -151337855 - L2 LINE L2 -178 3094 2921 281 280 20 90 chr3 66699562 66699762 -151337396 - L2 LINE L2 -191 3081 2896 498 178 59 0 chr3 66699765 66699866 -151337292 + MER3 DNA MER1_type 33 139 -70 249 281 16 0 chr3 66700162 66700226 -151336932 + MIR SINE MIR 8 72 -190 417 20 0 0 chr3 66701140 66701190 -151335968 + (CATAT)n Simple_repeat Simple_repeat 2 51 0 21 0 0 0 chr3 66701208 66701229 -151335929 + AT_rich Low_complexity Low_complexity 1 21 0 2173 108 7 0 chr3 66701562 66701857 -151335301 + AluSp SINE Alu 1 297 -16 1258 191 0 43 chr3 66702088 66702150 -151335008 + MER58A DNA MER1_type 4 67 -2353 2448 62 10 0 chr3 66702150 66702458 -151334700 - AluY SINE Alu 0 311 1 1258 191 0 43 chr3 66702458 66702625 -151334533 + MER58A DNA MER1_type 67 223 -1 436 183 191 0 chr3 66703736 66703851 -151333307 - MIR SINE MIR -54 208 72 2096 128 44 68 chr3 66703867 66704251 -151332907 - THE1C LTR MaLR 0 375 1 449 228 20 30 chr3 66704922 66705023 -151332135 - MER5A DNA MER1_type -80 109 10 492 278 34 81 chr3 66705959 66706168 -151330990 - MIR SINE MIR -5 257 59 208 246 0 72 chr3 66706198 66706267 -151330891 + L2 LINE L2 3209 3272 0 827 199 40 0 chr3 66706930 66707081 -151330077 - FRAM SINE Alu -12 164 8 2351 102 0 7 chr3 66708075 66708379 -151328779 - AluSp SINE Alu -11 302 1 290 348 0 0 chr3 66709059 66709171 -151327987 - MER103 DNA DNA -44 122 11 2461 76 0 0 chr3 66710699 66711001 -151326157 + AluSg SINE Alu 3 304 -6 673 234 19 56 chr3 66711064 66711227 -151325931 - MIR SINE MIR -5 257 102 2521 48 0 3 chr3 66711227 66711519 -151325639 + AluY SINE Alu 1 291 -20 673 234 19 56 chr3 66711519 66711569 -151325589 - MIR SINE MIR -160 102 52 1753 182 0 13 chr3 66712459 66712761 -151324397 + AluJo SINE Alu 1 298 -14 349 313 82 27 chr3 66712903 66713119 -151324039 - MIR3 SINE MIR -16 246 7 482 297 162 5 chr3 66714146 66714368 -151322790 + MIR SINE MIR 6 262 0 1145 162 9 53 chr3 66714403 66714631 -151322527 + MER20 DNA MER1_type 1 218 -1 198 0 0 0 chr3 66714738 66714760 -151322398 + (T)n Simple_repeat Simple_repeat 1 22 0 1999 92 81 0 chr3 66715013 66715284 -151321874 + AluSx SINE Alu 1 293 -19 325 58 39 0 chr3 66715318 66715370 -151321788 + (CA)n Simple_repeat Simple_repeat 2 55 0 42 0 0 0 chr3 66715643 66715685 -151321473 + AT_rich Low_complexity Low_complexity 1 42 0 5894 126 141 22 chr3 66715695 66716783 -151320375 - Tigger3b DNA MER2_type -14 1217 1 26 30 0 0 chr3 66716787 66716820 -151320338 + AT_rich Low_complexity Low_complexity 1 33 0 248 277 0 15 chr3 66717009 66717074 -151320084 + L2 LINE L2 3248 3311 -2 216 196 0 22 chr3 66718100 66718146 -151319012 + CT-rich Low_complexity Low_complexity 2 46 0 25 0 0 0 chr3 66718362 66718387 -151318771 + AT_rich Low_complexity Low_complexity 1 25 0 3261 86 26 0 chr3 66718387 66718816 -151318342 - L1PB2 LINE L1 -3 6148 5709 945 229 33 14 chr3 66718816 66719030 -151318128 - MER58A DNA MER1_type -6 218 1 2518 98 23 10 chr3 66719298 66719694 -151317464 - L1P5 LINE L1 -502 5654 5254 1723 206 6 6 chr3 66719700 66720021 -151317137 + L1PB4 LINE L1 5828 6148 -8 386 224 98 21 chr3 66720164 66720307 -151316851 + MER104 DNA Tc2 27 180 0 1906 132 40 3 chr3 66721324 66721620 -151315538 - AluSx SINE Alu -5 307 1 22 35 0 0 chr3 66721962 66721991 -151315167 + AT_rich Low_complexity Low_complexity 1 29 0 227 286 48 0 chr3 66722134 66722197 -151314961 - MER115 DNA AcHobo -9 684 619 327 196 13 0 chr3 66722756 66722821 -151314337 - MER115 DNA AcHobo -631 62 9 214 349 41 27 chr3 66724733 66724879 -151312279 + L2 LINE L2 2933 3080 -192 1126 142 10 39 chr3 66724976 66725181 -151311977 + MER3 DNA MER1_type 11 209 0 427 250 0 96 chr3 66725183 66725339 -151311819 - Charlie8 DNA MER1_type -2088 329 189 352 285 121 6 chr3 66725502 66725667 -151311491 + L2 LINE L2 3127 3310 -3 1814 199 63 26 chr3 66725900 66726282 -151310876 + MSTD LTR MaLR 1 396 0 2351 196 6 57 chr3 66726793 66727219 -151309939 + MLT1D LTR MaLR 21 418 -87 1749 85 105 78 chr3 66727219 66727514 -151309644 - AluSq SINE Alu -8 305 3 2351 196 6 57 chr3 66727514 66727598 -151309560 + MLT1D LTR MaLR 418 505 0 423 283 236 15 chr3 66727683 66728082 -151309076 - L2 LINE L2 -3 3310 2824 208 176 0 20 chr3 66728503 66728554 -151308604 + T-rich Low_complexity Low_complexity 3 52 0 1728 181 13 7 chr3 66728586 66728885 -151308273 + AluJo SINE Alu 1 301 -11 532 231 231 6 chr3 66729709 66729869 -151307289 + MIR SINE MIR 5 200 -62 811 194 0 15 chr3 66730296 66730430 -151306728 + FLAM_C SINE Alu 2 133 -10 2328 96 20 0 chr3 66730689 66730992 -151306166 + AluSx SINE Alu 1 309 -3 214 314 59 42 chr3 66731378 66731496 -151305662 + MIR3 SINE MIR 51 170 -38 268 250 194 0 chr3 66731520 66731628 -151305530 - L2 LINE L2 -27 3286 3158 450 252 0 57 chr3 66731646 66731769 -151305389 + L2 LINE L2 3187 3302 -11 1495 242 125 44 chr3 66732054 66732136 -151305022 - L1ME2 LINE L1 -2 6162 6088 2811 161 55 19 chr3 66732136 66732664 -151304494 + L1MB3 LINE L1 5635 6181 -2 1495 242 125 44 chr3 66732664 66733213 -151303945 - L1ME2 LINE L1 -76 6088 5480 29 0 0 0 chr3 66733413 66733442 -151303716 + AT_rich Low_complexity Low_complexity 1 29 0 498 329 111 16 chr3 66733680 66734112 -151303046 - L2 LINE L2 -2209 1105 633 710 191 0 0 chr3 66734301 66734416 -151302742 - FRAM SINE Alu -30 146 32 284 226 24 119 chr3 66734474 66734558 -151302600 - L2 LINE L2 -10 3262 3187 1845 248 92 8 chr3 66735075 66735599 -151301559 - MER90 LTR ERV1 0 575 8 379 279 168 44 chr3 66736496 66736764 -151300394 - L1ME LINE L1 -369 5752 5456 198 0 0 0 chr3 66737314 66737336 -151299822 + (T)n Simple_repeat Simple_repeat 1 22 0 292 331 85 82 chr3 66738120 66738425 -151298733 - L2 LINE L2 0 3272 2967 2343 65 24 0 chr3 66738942 66739232 -151297926 - AluY SINE Alu -14 297 1 192 167 135 0 chr3 66739300 66739357 -151297801 + MIR SINE MIR 83 152 -56 358 247 7 58 chr3 66739762 66739916 -151297242 + Charlie7 DNA MER1_type 2467 2612 0 620 248 134 88 chr3 66739940 66740453 -151296705 + LTR67 LTR ERVL 16 552 -5 280 330 162 21 chr3 66740844 66741035 -151296123 - MIR SINE MIR -4 258 41 387 326 83 80 chr3 66741190 66741466 -151295692 + L2 LINE L2 2996 3272 0 24 0 0 0 chr3 66741538 66741562 -151295596 + AT_rich Low_complexity Low_complexity 1 24 0 1063 66 0 15 chr3 66741562 66741698 -151295460 - L1PB1 LINE L1 0 6151 6018 43371 48 6 0 chr3 66741705 66747785 -151289373 - L1PA4 LINE L1 -1 6154 41 5544 149 11 48 chr3 66747779 66749761 -151287397 - L1PB1 LINE L1 -111 6040 4134 * 623 230 7 7 chr3 66749789 66749924 -151287234 - MER106B DNA MER1_type -923 136 2 279 276 41 0 chr3 66749927 66750025 -151287133 + MIR SINE MIR 104 205 -57 448 318 39 0 chr3 66751268 66751397 -151285761 - L2 LINE L2 -1 3271 3138 241 301 172 11 chr3 66753028 66753121 -151284037 - L2 LINE L2 -1 3312 3205 424 230 101 73 chr3 66753291 66753608 -151283550 + L1ME4a LINE L1 5794 6119 -2 209 308 31 0 chr3 66754404 66754469 -151282689 - MIR SINE MIR -8 254 188 376 243 63 18 chr3 66754580 66754622 -151282536 + MIR SINE MIR 28 67 -195 393 58 0 0 chr3 66754622 66754674 -151282484 + (TG)n Simple_repeat Simple_repeat 2 53 0 376 243 63 18 chr3 66754674 66754742 -151282416 + MIR SINE MIR 67 143 -119 312 83 0 0 chr3 66755889 66755937 -151281221 + (CA)n Simple_repeat Simple_repeat 2 49 0 2065 129 4 0 chr3 66756054 66756378 -151280780 + AluSc SINE Alu 1 325 0 416 287 17 17 chr3 66756499 66756614 -151280544 - L2 LINE L2 0 3313 3199 2136 102 0 33 chr3 66756650 66756955 -151280203 - AluSg1 SINE Alu -14 295 1 933 128 187 7 chr3 66757927 66758219 -151278939 - L1MA9 LINE L1 -116 6206 5821 581 141 20 0 chr3 66758219 66758316 -151278842 + L1MA9 LINE L1 6206 6306 -6 291 274 48 0 chr3 66759818 66759902 -151277256 + MIR SINE MIR 169 256 -6 732 238 67 21 chr3 66759924 66760117 -151277041 + MER63A DNA MER1_type 4 205 -5 732 276 168 53 chr3 66760776 66761046 -151276112 + L2 LINE L2 2419 2656 -657 1694 180 3 7 chr3 66761046 66761329 -151275829 + AluJo SINE Alu 1 282 -30 732 276 168 53 chr3 66761329 66761856 -151275302 + L2 LINE L2 2656 3312 -1 372 317 171 24 chr3 66761960 66762544 -151274614 + L2 LINE L2 2118 2787 -527 307 283 0 81 chr3 66763103 66763273 -151273885 - MER112 DNA MER1_type -27 233 78 706 209 39 11 chr3 66763273 66763447 -151273711 + MLT1J2 LTR MaLR 1 179 -268 671 274 38 11 chr3 66763535 66763721 -151273437 - MIR SINE MIR -62 200 10 186 43 0 0 chr3 66765048 66765071 -151272087 + (A)n Simple_repeat Simple_repeat 1 23 0 455 284 35 12 chr3 66765397 66765566 -151271592 + MER97a DNA MER1_type? 2 174 -720 1994 144 10 0 chr3 66765716 66766014 -151271144 - AluJb SINE Alu -11 301 1 312 70 0 0 chr3 66766041 66766084 -151271074 + (CA)n Simple_repeat Simple_repeat 2 44 0 3369 158 28 9 chr3 66766105 66766644 -151270514 + MER44D DNA MER2_type 2 605 0 1923 125 95 10 chr3 66766756 66766977 -151270181 + MER7C DNA MER2_type 3 258 -2770 182 37 37 0 chr3 66766977 66767004 -151270154 + (CTCA)n Simple_repeat Simple_repeat 3 30 0 1923 125 95 10 chr3 66767004 66767086 -151270072 + MER7C DNA MER2_type 258 332 -270 314 153 0 34 chr3 66767092 66767151 -151270007 - Alu SINE Alu -8 294 238 * 484 220 45 50 chr3 66767150 66767318 -151269840 - MLT1D LTR MaLR -312 193 18 414 320 7 33 chr3 66767379 66767532 -151269626 - L2 LINE L2 -1 3312 3164 552 251 70 23 chr3 66767727 66767898 -151269260 + MIR SINE MIR 23 201 -61 302 252 54 68 chr3 66767927 66768041 -151269117 - L1ME4a LINE L1 -12 6109 5996 2013 120 18 0 chr3 66768041 66768324 -151268834 - AluSg SINE Alu -16 294 7 302 252 54 68 chr3 66768324 66768356 -151268802 - L1ME4a LINE L1 -125 5996 5965 475 299 36 6 chr3 66768919 66769086 -151268072 + MIR SINE MIR 14 185 -77 212 289 0 0 chr3 66769173 66769225 -151267933 - L2 LINE L2 -1 3312 3261 248 269 255 47 chr3 66769465 66769614 -151267544 + MIR SINE MIR 79 258 -4 382 193 51 3 chr3 66769991 66770091 -151267067 + MIR3 SINE MIR 90 166 -42 838 176 0 0 chr3 66770689 66770825 -151266333 + AluJb SINE Alu 1 136 -176 1635 177 3 21 chr3 66770826 66771114 -151266044 + AluJo SINE Alu 3 285 -27 576 214 70 75 chr3 66771125 66771326 -151265832 - MIR SINE MIR -4 258 59 614 318 126 35 chr3 66771329 66771851 -151265307 - Tigger8 DNA MER2_type -42 624 55 633 264 72 40 chr3 66772118 66772368 -151264790 + L3 LINE CR1 1045 1302 -275 577 317 21 25 chr3 66772379 66772622 -151264536 + MIR SINE MIR 9 250 -12 348 288 174 38 chr3 66772641 66772877 -151264281 + L3 LINE CR1 1295 1562 -15 252 86 0 0 chr3 66772975 66773010 -151264148 + (CCA)n Simple_repeat Simple_repeat 1 35 0 370 290 8 0 chr3 66773528 66773652 -151263506 + L2 LINE L2 2935 3059 -254 333 273 58 87 chr3 66773778 66774020 -151263138 + L2 LINE L2 3076 3310 -3 1194 262 56 24 chr3 66774233 66774645 -151262513 + LTR16A1 LTR ERVL 33 457 0 2301 104 0 22 chr3 66774724 66775041 -151262117 + AluSq SINE Alu 1 310 -3 253 351 40 27 chr3 66775096 66775244 -151261914 + L3 LINE CR1 1268 1417 -160 2633 211 31 62 chr3 66775250 66775894 -151261264 - MLT1E2 LTR MaLR -2 624 1 1190 213 23 114 chr3 66775895 66776323 -151260835 - MLT1E2-int LTR MaLR -1 1370 982 572 212 0 0 chr3 66776337 66776436 -151260722 - 5S rRNA rRNA 0 121 23 245 333 20 20 chr3 66776516 66776618 -151260540 + L3 LINE CR1 1264 1365 -212 274 342 89 30 chr3 66776887 66777124 -151260034 + MIR SINE MIR 12 262 0 192 321 119 9 chr3 66777163 66777272 -151259886 + L2 LINE L2 3177 3297 -16 22 70 0 0 chr3 66777648 66777691 -151259467 + AT_rich Low_complexity Low_complexity 1 43 0 313 313 0 0 chr3 66777719 66777818 -151259340 + L2 LINE L2 2822 2920 -394 237 139 0 47 chr3 66777843 66777886 -151259272 + L2 LINE L2 3189 3229 -84 337 224 0 13 chr3 66778158 66778234 -151258924 - MIR SINE MIR -130 132 58 454 310 95 29 chr3 66778270 66778618 -151258540 - L1M4 LINE L1 -3279 2867 2497 642 287 31 35 chr3 66778836 66779097 -151258061 + MIR SINE MIR 2 261 -1 365 231 102 37 chr3 66779176 66779284 -151257874 - L2 LINE L2 -1 3312 3198 21 0 0 0 chr3 66779309 66779330 -151257828 + AT_rich Low_complexity Low_complexity 1 21 0 2774 197 76 4 chr3 66779449 66779977 -151257181 - MLT1F1 LTR MaLR 0 567 2 1336 201 5 5 chr3 66780036 66780260 -151256898 - MER58A DNA MER1_type 0 224 1 2941 145 36 0 chr3 66780736 66781205 -151255953 - L1MB2 LINE L1 -3 6168 5683 2649 286 63 39 chr3 66781276 66782379 -151254779 + L2 LINE L2 1812 2996 -317 1409 147 9 17 chr3 66782379 66782610 -151254548 - MER30 DNA MER1_type -1 229 1 2649 286 63 39 chr3 66782610 66782871 -151254287 + L2 LINE L2 2996 3249 -64 454 225 288 1 chr3 66783001 66783151 -151254007 + MLT1G LTR MaLR 2 191 -376 485 145 36 0 chr3 66783159 66783242 -151253916 + MLT1G LTR MaLR 495 580 -10 297 260 240 20 chr3 66783745 66783891 -151253267 - MIR3 SINE MIR -17 191 14 461 315 78 0 chr3 66784425 66784711 -151252447 - MLT1J2 LTR MaLR -37 413 93 1073 181 108 9 chr3 66785678 66785910 -151251248 - MER63 DNA MER1_type -84 977 723 2204 120 0 0 chr3 66786574 66786866 -151250292 - AluSc SINE Alu -14 295 4 210 244 0 0 chr3 66789521 66789566 -151247592 + A-rich Low_complexity Low_complexity 3 47 0 31 0 0 0 chr3 66789889 66789920 -151247238 + AT_rich Low_complexity Low_complexity 1 31 0 2330 80 3 3 chr3 66790503 66790803 -151246355 + AluY SINE Alu 1 300 -11 1228 124 0 0 chr3 66790803 66790981 -151246177 + AluSg/x SINE Alu 132 309 -1 696 228 52 60 chr3 66791834 66792067 -151245091 - MLT1K LTR MaLR -27 561 331 485 256 56 25 chr3 66793330 66793490 -151243668 - MIR SINE MIR -85 177 13 2540 265 75 37 chr3 66794645 66795928 -151241230 + L1ME3A LINE L1 3118 4448 -1698 880 235 59 89 chr3 66795966 66796090 -151241068 + L1ME3A LINE L1 5718 5844 -326 1265 51 0 0 chr3 66796090 66796247 -151240911 + L1PA3 LINE L1 5998 6154 -1 880 235 59 89 chr3 66796247 66796581 -151240577 + L1ME3A LINE L1 5844 6162 -8 4589 160 48 2 chr3 66796591 66797468 -151239690 + L1MB7 LINE L1 5263 6184 0 12423 205 37 21 chr3 66797518 66799065 -151238093 + L1PA16 LINE L1 1965 3486 -2680 240 114 0 68 chr3 66799065 66799109 -151238049 + MER61E LTR ERV1 42 82 -487 12423 205 37 21 chr3 66799109 66800204 -151236954 + L1PA16 LINE L1 3486 4562 -1604 2255 182 29 2 chr3 66800204 66800617 -151236541 - MSTB LTR MaLR 0 426 3 12423 205 37 21 chr3 66800617 66802060 -151235098 + L1PA16 LINE L1 4562 6161 -5 2772 136 2 7 chr3 66802249 66802677 -151234481 - MSTA LTR MaLR -2 426 1 381 226 150 23 chr3 66802908 66803041 -151234117 + MIR SINE MIR 100 249 -13 355 320 0 24 chr3 66803304 66803429 -151233729 + MIR3 SINE MIR 78 199 -9 404 269 174 0 chr3 66804465 66804614 -151232544 + MIR SINE MIR 88 262 0 230 341 45 30 chr3 66804646 66804778 -151232380 + MER5B DNA MER1_type 37 170 -8 285 337 21 0 chr3 66806485 66806580 -151230578 - MIR SINE MIR -8 254 158 466 221 153 0 chr3 66808136 66808274 -151228884 - MER5A DNA MER1_type -24 165 4 243 290 29 0 chr3 66808340 66808409 -151228749 + L2 LINE L2 3243 3313 0 187 276 133 20 chr3 66809008 66809106 -151228052 + L2 LINE L2 3199 3307 -6 347 264 22 0 chr3 66809299 66809390 -151227768 + MER103 DNA DNA 27 119 -47 1447 141 0 0 chr3 66810200 66810406 -151226752 + AluSx SINE Alu 1 206 -106 1794 196 6 25 chr3 66810429 66810786 -151226372 - MLT1A2 LTR MaLR -24 350 1 21 36 0 0 chr3 66812380 66812408 -151224750 + AT_rich Low_complexity Low_complexity 1 28 0 1891 113 0 4 chr3 66813018 66813274 -151223884 + AluSx SINE Alu 39 293 -19 548 304 36 0 chr3 66813341 66813509 -151223649 + MIR SINE MIR 89 262 0 183 80 0 0 chr3 66814074 66814099 -151223059 + (TG)n Simple_repeat Simple_repeat 1 25 0 234 256 101 82 chr3 66814747 66814954 -151222204 + MIR SINE MIR 20 230 -32 2049 132 7 7 chr3 66815259 66815562 -151221596 - AluSx SINE Alu -9 303 1 22 0 0 0 chr3 66816771 66816793 -151220365 + AT_rich Low_complexity Low_complexity 1 22 0 321 336 41 0 chr3 66817422 66817568 -151219590 - MER117 DNA MER1_type -45 152 1 692 295 62 103 chr3 66817725 66817871 -151219287 + L1ME3A LINE L1 58 209 -5910 2853 79 0 14 chr3 66817871 66818240 -151218918 - THE1B LTR MaLR 0 364 1 692 295 62 103 chr3 66818240 66818987 -151218171 + L1ME3A LINE L1 209 914 -5205 1131 301 60 43 chr3 66819026 66820051 -151217107 + L1ME3A LINE L1 3030 4071 -2058 523 257 48 24 chr3 66820086 66820343 -151216815 - MLT1H LTR MaLR -288 267 19 811 319 48 33 chr3 66820414 66820527 -151216631 + L1ME3A LINE L1 5448 5558 -595 2105 108 3 0 chr3 66820527 66820814 -151216344 - AluSg SINE Alu -10 300 13 811 319 48 33 chr3 66820814 66821180 -151215978 + L1ME3A LINE L1 5558 5934 -219 922 221 59 44 chr3 66822136 66822457 -151214701 - MER46C DNA MER2_type -4 334 9 2512 70 0 3 chr3 66823210 66823522 -151213636 + AluY SINE Alu 1 311 0 887 178 6 0 chr3 66823681 66823838 -151213320 - MER3 DNA MER1_type -25 184 27 1320 179 9 9 chr3 66823855 66824078 -151213080 + MER58A DNA MER1_type 2 224 0 582 89 20 10 chr3 66825046 66825147 -151212011 + L1PA15 LINE L1 6063 6164 -1 266 327 50 14 chr3 66825831 66825979 -151211179 + MIR SINE MIR 18 168 -65 213 255 0 0 chr3 66826034 66826081 -151211077 + (TTA)n Simple_repeat Simple_repeat 1 47 0 2121 130 0 19 chr3 66826316 66826632 -151210526 + AluSx SINE Alu 1 310 -2 264 226 0 0 chr3 66827129 66827182 -151209976 - L2 LINE L2 0 3313 3261 415 264 161 21 chr3 66827830 66828023 -151209135 - MIR SINE MIR -28 234 15 2060 148 3 0 chr3 66828103 66828413 -151208745 - AluSx SINE Alu -1 311 1 238 290 0 0 chr3 66828715 66828784 -151208374 + (TA)n Simple_repeat Simple_repeat 1 69 0 * 265 254 0 0 chr3 66828735 66828790 -151208368 + (CATA)n Simple_repeat Simple_repeat 3 57 0 1034 50 0 0 chr3 66828923 66829043 -151208115 - AluYa5/8 SINE Alu -21 290 171 1920 130 25 6 chr3 66829579 66829901 -151207257 - L1MA5 LINE L1 0 6300 5973 329 67 283 0 chr3 66833481 66833571 -151203587 - AluSc SINE Alu 0 309 203 4240 144 14 10 chr3 66833572 66833826 -151203332 - L1 LINE L1 -1127 5019 4767 2044 141 17 0 chr3 66833826 66834123 -151203035 - AluSx SINE Alu -10 302 1 4240 144 14 10 chr3 66834123 66834652 -151202506 - L1 LINE L1 -1379 4767 4233 667 106 24 0 chr3 66834663 66834786 -151202372 + CT-rich Low_complexity Low_complexity 2 127 0 1422 208 28 7 chr3 66834787 66835075 -151202083 - AluJo SINE Alu 0 312 19 958 184 0 0 chr3 66835112 66835297 -151201861 - L1 LINE L1 -2153 3993 3809 789 182 28 57 chr3 66835390 66835637 -151201521 + L1MC5 LINE L1 7690 7929 -32 577 273 70 33 chr3 66837804 66838046 -151199112 - L2 LINE L2 -550 2764 2514 1906 169 8 46 chr3 66838047 66838420 -151198738 - MLT1A1 LTR MaLR -6 359 1 245 283 126 13 chr3 66839327 66839486 -151197672 - L1MC/D LINE L1 -1922 5886 5710 207 125 0 0 chr3 66840329 66840369 -151196789 + (CATA)n Simple_repeat Simple_repeat 3 42 0 394 339 50 14 chr3 66840369 66840564 -151196594 - MIR SINE MIR -56 206 5 754 216 112 50 chr3 66841245 66841504 -151195654 - MER102a DNA MER1_type -24 306 32 233 333 39 29 chr3 66841689 66841791 -151195367 + MIR SINE MIR 23 125 -83 468 331 82 62 chr3 66841833 66842138 -151195020 - L2 LINE L2 -11 3261 2951 1131 211 9 5 chr3 66842393 66842616 -151194542 + MER58A DNA MER1_type 1 224 0 2501 72 0 0 chr3 66842633 66842937 -151194221 + AluY SINE Alu 1 304 -7 256 270 110 0 chr3 66842954 66843054 -151194104 + MIR SINE MIR 125 235 -27 372 273 83 0 chr3 66843179 66843300 -151193858 - MIR SINE MIR 0 262 132 337 236 171 23 chr3 66843386 66843522 -151193636 - MIR SINE MIR -59 149 2 204 316 60 8 chr3 66843881 66843998 -151193160 - MIR SINE MIR -10 252 130 504 338 42 17 chr3 66844446 66844683 -151192475 + MIR SINE MIR 18 260 -2 2564 179 38 39 chr3 66845346 66845905 -151191253 - MER74A LTR ERVL 0 558 1 569 236 114 102 chr3 66845972 66846306 -151190852 + MER21B LTR ERV1 1 338 -525 634 212 0 0 chr3 66846309 66846427 -151190731 - LTR8 LTR ERV1 0 691 574 1758 179 13 89 chr3 66846427 66846886 -151190272 - LTR8 LTR ERV1 -267 424 1 1277 216 48 55 chr3 66846926 66846978 -151190180 + MER21B LTR ERV1 418 469 -394 2512 208 96 31 chr3 66846978 66847656 -151189502 + MER72 LTR ERV1 1 722 0 1277 216 48 55 chr3 66847656 66848001 -151189157 + MER21B LTR ERV1 469 812 -51 363 132 0 0 chr3 66849075 66849143 -151188015 + (TG)n Simple_repeat Simple_repeat 2 69 0 689 157 0 19 chr3 66850137 66850296 -151186862 + GA-rich Low_complexity Low_complexity 1 156 0 247 176 59 78 chr3 66851245 66851347 -151185811 - L1ME LINE L1 -489 5632 5533 228 295 58 29 chr3 66851873 66852012 -151185146 - L1MC/D LINE L1 -1908 5900 5758 591 52 0 0 chr3 66852068 66852145 -151185013 + L1PA14 LINE L1 5678 5754 -407 2636 114 17 24 chr3 66852248 66852668 -151184490 + L1PA14 LINE L1 5744 6160 -1 235 173 19 0 chr3 66852695 66852747 -151184411 + (TTTAA)n Simple_repeat Simple_repeat 5 57 0 350 337 121 11 chr3 66853442 66853706 -151183452 - L1 LINE L1 -2149 3997 3705 325 221 110 62 chr3 66854119 66854264 -151182894 - MIR3 SINE MIR -15 193 42 495 262 67 91 chr3 66854352 66854650 -151182508 - MLT1K LTR MaLR -3 585 295 948 286 97 43 chr3 66855803 66856067 -151181091 + L2 LINE L2 2440 2688 -625 1646 196 3 37 chr3 66856067 66856389 -151180769 + AluJo SINE Alu 1 311 -1 948 286 97 43 chr3 66856389 66856947 -151180211 + L2 LINE L2 2688 3313 0 815 265 40 4 chr3 66857158 66857411 -151179747 - MER110 LTR ERV1 -54 437 176 183 368 18 0 chr3 66857651 66857708 -151179450 - L2 LINE L2 0 3272 3215 411 21 0 0 chr3 66857891 66857939 -151179219 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 752 177 183 11 chr3 66857967 66858153 -151179005 - MER20 DNA MER1_type 0 219 2 208 331 144 46 chr3 66858368 66858758 -151178400 + L2 LINE L2 2806 3233 -39 257 295 48 59 chr3 66859271 66859542 -151177616 + MER102b DNA MER1_type 72 339 -2 236 317 37 11 chr3 66860047 66860181 -151176977 + MIR SINE MIR 27 150 -58 261 100 267 0 chr3 66861553 66861613 -151175545 + MER103 DNA DNA 10 85 -81 1130 221 121 35 chr3 66862327 66862757 -151174401 - MLT1C LTR MaLR 0 467 1 320 222 99 12 chr3 66863936 66864017 -151173141 - MIR3 SINE MIR -2 206 119 384 295 49 74 chr3 66865576 66865771 -151171387 - MIR SINE MIR -50 212 17 1378 181 96 11 chr3 66866435 66866705 -151170453 - AluJo SINE Alu -19 293 1 571 320 39 33 chr3 66866712 66867018 -151170140 - L1M4 LINE L1 -1103 5043 4736 233 293 54 50 chr3 66867051 66867238 -151169920 - MIR3 SINE MIR -12 196 15 308 247 12 0 chr3 66867599 66867684 -151169474 + MER103 DNA DNA 13 98 -68 22 56 0 0 chr3 66868019 66868055 -151169103 + AT_rich Low_complexity Low_complexity 1 36 0 755 335 57 29 chr3 66870150 66870604 -151166554 + L2 LINE L2 2246 2712 -602 717 233 112 39 chr3 66870607 66870865 -151166293 - L1MC5 LINE L1 -1061 6900 6624 465 207 16 41 chr3 66870869 66870990 -151166168 + L1PB4 LINE L1 5991 6108 -48 277 306 77 43 chr3 66871104 66871313 -151165845 + L2 LINE L2 3097 3312 -1 1262 167 63 0 chr3 66871990 66872289 -151164869 + MER33 DNA MER1_type 1 318 -6 604 208 8 0 chr3 66872797 66872922 -151164236 - MIR SINE MIR 0 262 137 255 280 11 65 chr3 66873415 66873508 -151163650 - MLT1J1 LTR MaLR -93 353 266 351 0 0 0 chr3 66874457 66874496 -151162662 + (CA)n Simple_repeat Simple_repeat 2 40 0 303 288 7 103 chr3 66876582 66876728 -151160430 - MIR3 SINE MIR -35 173 42 4545 142 26 11 chr3 66876795 66877648 -151159510 - L1MA4A LINE L1 0 6303 5296 450 318 62 11 chr3 66877658 66877932 -151159226 - HAL1 LINE L1 0 2507 2220 324 297 44 0 chr3 66878011 66878102 -151159056 - HAL1 LINE L1 -1585 922 828 1205 215 70 68 chr3 66878103 66878605 -151158553 - L1ME2 LINE L1 0 6164 5662 1511 164 54 51 chr3 66878618 66878954 -151158204 - MER1B DNA MER1_type 0 337 1 1841 206 19 6 chr3 66879175 66879535 -151157623 - MLT1A1 LTR MaLR 0 365 1 25 51 0 0 chr3 66879977 66880016 -151157142 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr3 66880033 66880056 -151157102 + AT_rich Low_complexity Low_complexity 1 23 0 842 292 67 91 chr3 66881769 66881924 -151155234 + L2 LINE L2 2589 2746 -567 525 252 139 0 chr3 66881924 66882075 -151155083 - MER45A DNA AcHobo -4 174 3 842 292 67 91 chr3 66882075 66882302 -151154856 + L2 LINE L2 2746 2977 -336 1118 196 117 3 chr3 66882302 66882593 -151154565 + MER33 DNA MER1_type 1 324 0 842 292 67 91 chr3 66882593 66882954 -151154204 + L2 LINE L2 2977 3313 0 286 288 12 0 chr3 66882960 66883040 -151154118 - LTR67 LTR ERVL -351 206 126 278 207 69 168 chr3 66883670 66883873 -151153285 - MIR SINE MIR 0 262 80 24 32 0 0 chr3 66883901 66883932 -151153226 + AT_rich Low_complexity Low_complexity 1 31 0 419 235 91 53 chr3 66885935 66886067 -151151091 - L2 LINE L2 -4 3268 3132 282 232 91 10 chr3 66886136 66886235 -151150923 - LTR67 LTR ERVL -22 535 429 207 320 51 39 chr3 66886670 66886748 -151150410 + L2 LINE L2 3194 3272 0 31 26 0 0 chr3 66887249 66887287 -151149871 + AT_rich Low_complexity Low_complexity 1 38 0 380 350 50 17 chr3 66887289 66887469 -151149689 - MIR SINE MIR -13 249 64 592 203 38 51 chr3 66888206 66888364 -151148794 + MER20 DNA MER1_type 27 182 -37 1041 81 4 179 chr3 66889336 66889570 -151147588 - 7SK RNA RNA 0 193 1 462 311 14 7 chr3 66890223 66890371 -151146787 - MIR3 SINE MIR -23 185 37 358 303 119 86 chr3 66890526 66890863 -151146295 - L2 LINE L2 -56 3216 2869 318 161 194 32 chr3 66892008 66892101 -151145057 + MLT1E1 LTR MaLR 1 108 -546 * 786 198 27 86 chr3 66892097 66892319 -151144839 + MLT1E2 LTR MaLR 415 623 -3 17344 110 11 7 chr3 66892505 66895755 -151141403 + L1P4 LINE L1 2521 5783 -385 210 282 28 14 chr3 66898336 66898407 -151138751 - L2 LINE L2 -5 3267 3196 252 323 50 10 chr3 66898704 66898803 -151138355 + MIR SINE MIR 20 122 -140 584 310 5 19 chr3 66898906 66899122 -151138036 + L1MDa LINE L1 57 269 -6271 245 219 14 0 chr3 66899129 66899202 -151137956 + GA-rich Low_complexity Low_complexity 1 74 0 1588 115 4 28 chr3 66899591 66899844 -151137314 + L1PA10 LINE L1 5911 6157 -11 1518 172 8 0 chr3 66899903 66900165 -151136993 + AluJb SINE Alu 42 305 -7 472 311 45 0 chr3 66900316 66900448 -151136710 + L2 LINE L2 3134 3271 -1 595 176 10 0 chr3 66900498 66900600 -151136558 - MER58A DNA MER1_type -4 103 1 262 228 51 89 chr3 66901386 66901544 -151135614 + L1ME4a LINE L1 5758 5909 -212 489 254 56 14 chr3 66901663 66901805 -151135353 + MIR SINE MIR 2 149 -113 218 179 0 0 chr3 66901840 66901879 -151135279 + L2 LINE L2 3274 3312 -1 1210 219 37 21 chr3 66902019 66902344 -151134814 - L1ME1 LINE L1 -20 6146 5817 225 345 88 40 chr3 66902465 66902613 -151134545 - MIR3 SINE MIR -14 194 40 241 336 67 15 chr3 66904415 66904549 -151132609 + L3 LINE CR1 343 483 -1094 521 320 100 13 chr3 66904895 66905126 -151132032 - MIR SINE MIR -1 261 11 1794 169 40 12 chr3 66905265 66905667 -151131491 - LTR37A LTR ERV1 -6 420 8 368 280 6 76 chr3 66905799 66905956 -151131202 - MIR3 SINE MIR -22 186 41 2326 91 3 3 chr3 66905995 66906304 -151130854 + AluSc SINE Alu 1 309 0 1480 158 53 145 chr3 66906458 66906914 -151130244 - MLT2D LTR ERVL 0 414 1 559 268 21 91 chr3 66907479 66907722 -151129436 + L2 LINE L2 3088 3313 0 262 212 35 71 chr3 66907729 66907814 -151129344 - MIR SINE MIR -75 187 106 858 165 16 28 chr3 66908041 66908223 -151128935 + L1MB3 LINE L1 6002 6181 -2 500 326 30 18 chr3 66908322 66908534 -151128624 + MIR SINE MIR 30 241 -21 543 204 79 37 chr3 66909299 66909494 -151127664 + MER69 DNA AcHobo 1 2523 -3 401 328 30 0 chr3 66910680 66910811 -151126347 + MIR SINE MIR 72 206 -56 227 323 44 39 chr3 66911650 66911815 -151125343 - MIR SINE MIR -59 203 32 417 271 23 16 chr3 66912672 66912801 -151124357 - MIR SINE MIR -52 210 81 379 175 12 12 chr3 66912924 66913004 -151124154 - MER58A DNA MER1_type -24 83 4 477 0 0 0 chr3 66913504 66913557 -151123601 + (TG)n Simple_repeat Simple_repeat 2 54 0 1416 96 0 0 chr3 66913557 66913734 -151123424 - AluSc SINE Alu -28 281 105 474 263 68 23 chr3 66914498 66914631 -151122527 - L2 LINE L2 -4 3309 3171 1167 207 62 10 chr3 66915171 66915476 -151121682 - L1ME1 LINE L1 -9 6157 5837 2891 106 30 0 chr3 66915487 66915522 -151121636 - MLT2A2 LTR ERVL -7 446 414 387 0 0 0 chr3 66915522 66915565 -151121593 + (CA)n Simple_repeat Simple_repeat 2 44 0 2891 106 30 0 chr3 66915565 66915962 -151121196 - MLT2A2 LTR ERVL -39 414 1 373 221 12 0 chr3 66915962 66916048 -151121110 - L1MC4 LINE L1 -2206 5836 5750 556 286 103 68 chr3 66916088 66916717 -151120441 + L2 LINE L2 2601 3313 0 219 240 163 50 chr3 66916965 66917121 -151120037 + MIR SINE MIR 16 229 -33 446 321 33 22 chr3 66918203 66918387 -151118771 + MER5A DNA MER1_type 2 187 -2 22 0 0 0 chr3 66918399 66918421 -151118737 + AT_rich Low_complexity Low_complexity 1 22 0 630 112 35 9 chr3 66919307 66919513 -151117645 + L1MDb LINE L1 1028 1326 -5083 369 192 0 0 chr3 66919541 66919661 -151117497 + (TA)n Simple_repeat Simple_repeat 2 121 0 348 247 11 21 chr3 66919688 66919781 -151117377 - L1MC4 LINE L1 -1336 6706 6615 317 284 11 0 chr3 66919740 66919828 -151117330 + L1MC4 LINE L1 6615 6703 -1339 * 448 239 161 15 chr3 66919880 66920010 -151117148 + FRAM SINE Alu 4 152 -14 255 188 152 61 chr3 66920010 66920175 -151116983 + L1MDa LINE L1 1992 2171 -4369 4657 170 14 5 chr3 66920191 66921134 -151116024 - L1M4c LINE L1 -962 6603 5653 845 90 0 0 chr3 66921145 66921256 -151115902 - L1PA10 LINE L1 -5 6163 6053 5879 86 16 3 chr3 66921358 66922488 -151114670 - L1PA10 LINE L1 -87 6081 4933 3126 201 2 24 chr3 66922477 66923455 -151113703 - L1PA13 LINE L1 -4312 2149 1209 * 1326 247 18 52 chr3 66923463 66923905 -151113253 - L1PA13 LINE L1 -5448 427 1 * 8122 202 24 25 chr3 66923901 66924536 -151112622 - L1M4c LINE L1 -1900 5665 5031 1138 218 72 56 chr3 66924536 66924926 -151112232 - MSTD LTR MaLR 0 396 1 8122 202 24 25 chr3 66924926 66926453 -151110705 - L1M4c LINE L1 -2534 5031 3524 749 196 0 0 chr3 66926457 66926590 -151110568 + AluJb SINE Alu 177 309 -3 783 202 5 25 chr3 66926669 66926867 -151110291 + L1M2 LINE L1 2434 2627 -4222 373 227 25 25 chr3 66926859 66926978 -151110180 + L1M2 LINE L1 2554 2672 -4177 * 1014 180 0 34 chr3 66927089 66927267 -151109891 - AluJo SINE Alu -140 172 1 1407 16 0 27 chr3 66927289 66927474 -151109684 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 527 210 7 51 chr3 66927476 66927649 -151109509 - FLAM_A SINE Alu 0 177 11 1969 240 64 28 chr3 66927653 66928093 -151109065 - L1M4c LINE L1 -4519 2977 2554 2247 184 26 5 chr3 66928093 66928516 -151108642 - MSTB1 LTR MaLR 0 432 1 1969 240 64 28 chr3 66928516 66929414 -151107744 - L1M4c LINE L1 -4942 2554 1770 1123 220 35 14 chr3 66929428 66929710 -151107448 - L1M4c LINE L1 -6742 747 460 7759 248 37 29 chr3 66929735 66933739 -151103419 + L1MD2 LINE L1 3020 7047 -14 246 276 0 0 chr3 66933746 66933804 -151103354 + MIR SINE MIR 204 261 -1 2193 105 54 0 chr3 66934007 66934303 -151102855 + AluSx SINE Alu 1 312 0 1464 221 92 43 chr3 66934576 66935087 -151102071 + MLT1E1 LTR MaLR 119 654 0 260 222 0 0 chr3 66935432 66935486 -151101672 - MER5C DNA MER1_type -226 98 45 470 294 109 9 chr3 66936030 66936251 -151100907 + LTR67 LTR ERVL 314 556 -1 209 241 35 0 chr3 66936466 66936524 -151100634 - MIR3 SINE MIR -14 194 135 381 22 0 0 chr3 66936543 66936589 -151100569 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 482 328 110 42 chr3 66936591 66937188 -151099970 - L2 LINE L2 -1 3271 2635 3987 72 2 4 chr3 66938258 66938783 -151098375 + L1PA14 LINE L1 5629 6152 -9 21 0 0 0 chr3 66938791 66938812 -151098346 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 66938868 66938892 -151098266 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr3 66938905 66938934 -151098224 + AT_rich Low_complexity Low_complexity 1 29 0 200 172 17 0 chr3 66940026 66940084 -151097074 + GA-rich Low_complexity Low_complexity 2 60 0 228 288 0 17 chr3 66940902 66940961 -151096197 + L2 LINE L2 3215 3272 0 214 290 66 104 chr3 66941579 66941944 -151095214 + L2 LINE L2 2626 2976 -338 845 236 91 0 chr3 66942015 66942214 -151094944 + MIR SINE MIR 4 220 -42 725 270 107 36 chr3 66942477 66942948 -151094210 - L2 LINE L2 -25 3288 2687 367 232 7 138 chr3 66943505 66943643 -151093515 + MIR3 SINE MIR 42 161 -47 502 297 41 14 chr3 66943696 66943841 -151093317 + MER5A DNA MER1_type 38 186 -3 186 43 0 0 chr3 66943916 66943939 -151093219 + (A)n Simple_repeat Simple_repeat 1 23 0 6512 78 16 0 chr3 66944000 66945147 -151092011 + L1PA10 LINE L1 5004 6164 -4 220 323 99 19 chr3 66945759 66945920 -151091238 + MIR3 SINE MIR 1 174 -34 569 248 25 25 chr3 66946468 66946625 -151090533 - MER5A DNA MER1_type -31 158 2 252 221 65 26 chr3 66946625 66946687 -151090471 - MIR3 SINE MIR -51 157 93 300 53 0 0 chr3 66948710 66948748 -151088410 + (TG)n Simple_repeat Simple_repeat 2 39 0 227 121 0 0 chr3 66949052 66949085 -151088073 + MIR SINE MIR 216 248 -14 184 302 16 16 chr3 66950249 66950312 -151086846 - MIR SINE MIR 0 262 200 203 342 65 45 chr3 66951298 66951342 -151085816 - L2 LINE L2 -15 3257 3215 1330 216 40 55 chr3 66951342 66951745 -151085413 - MLT2C1 LTR ERVL 0 397 1 203 342 65 45 chr3 66951745 66951855 -151085303 - L2 LINE L2 -57 3215 3100 411 260 27 9 chr3 66951909 66952020 -151085138 + MIR SINE MIR 36 147 -63 23 33 0 0 chr3 66952491 66952521 -151084637 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 66954525 66954546 -151082612 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 66955215 66955239 -151081919 + AT_rich Low_complexity Low_complexity 1 24 0 187 267 133 27 chr3 66955897 66955972 -151081186 - L3b LINE CR1 -135 1448 1366 185 243 9 27 chr3 66959155 66959266 -151077892 + CT-rich Low_complexity Low_complexity 3 111 0 357 284 86 0 chr3 66959281 66959397 -151077761 - L1ME4a LINE L1 -207 5914 5789 768 156 0 44 chr3 66959438 66959573 -151077585 - FLAM_A SINE Alu -2 131 3 400 353 65 11 chr3 66959654 66959932 -151077226 - L1ME4a LINE L1 -617 5547 5255 977 292 97 59 chr3 66960073 66960847 -151076311 - L1ME4a LINE L1 -1092 5054 4252 195 42 0 0 chr3 66962094 66962118 -151075040 + (GA)n Simple_repeat Simple_repeat 1 24 0 24 0 0 0 chr3 66962124 66962148 -151075010 + AT_rich Low_complexity Low_complexity 1 24 0 864 127 8 15 chr3 66962282 66962416 -151074742 + FLAM_C SINE Alu 1 133 0 234 0 0 0 chr3 66962439 66962465 -151074693 + (A)n Simple_repeat Simple_repeat 1 26 0 205 125 107 0 chr3 66962799 66962855 -151074303 + (TATAA)n Simple_repeat Simple_repeat 1 62 0 25 51 0 0 chr3 66962861 66962900 -151074258 + AT_rich Low_complexity Low_complexity 1 39 0 288 0 0 0 chr3 66964984 66965016 -151072142 + (ATTG)n Simple_repeat Simple_repeat 4 35 0 2147 108 0 0 chr3 66965016 66965293 -151071865 - AluSc SINE Alu -32 277 1 225 0 0 0 chr3 66965673 66965698 -151071460 + (T)n Simple_repeat Simple_repeat 1 25 0 22 35 0 0 chr3 66965779 66965808 -151071350 + AT_rich Low_complexity Low_complexity 1 29 0 28 95 0 0 chr3 66966766 66966850 -151070308 + AT_rich Low_complexity Low_complexity 1 84 0 237 313 0 15 chr3 66969208 66969275 -151067883 + MIR SINE MIR 20 85 -177 1352 181 0 9 chr3 66969275 66969496 -151067662 - AluJo SINE Alu -54 258 40 1615 170 67 3 chr3 66969630 66969912 -151067246 + AluJo SINE Alu 1 300 -12 342 347 26 4 chr3 66970285 66970425 -151066733 - MIR SINE MIR -63 145 23 21 0 0 0 chr3 66970458 66970479 -151066679 + AT_rich Low_complexity Low_complexity 1 21 0 540 303 51 26 chr3 66970520 66970715 -151066443 - MIR SINE MIR -16 246 47 23 33 0 0 chr3 66972708 66972738 -151064420 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr3 66973975 66974000 -151063158 + AT_rich Low_complexity Low_complexity 1 25 0 225 196 0 0 chr3 66976529 66976575 -151060583 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 247 145 81 81 chr3 66977611 66977673 -151059485 - L2 LINE L2 -3 3310 3249 247 288 72 27 chr3 66977886 66977997 -151059161 - MIR SINE MIR -74 188 73 289 217 0 0 chr3 66978077 66978137 -151059021 - MER103 DNA DNA -74 92 33 210 224 0 0 chr3 66978703 66978752 -151058406 + CT-rich Low_complexity Low_complexity 3 51 0 278 333 38 38 chr3 66978761 66978866 -151058292 - L2 LINE L2 -19 3253 3149 225 94 0 0 chr3 66980369 66980401 -151056757 + (A)n Simple_repeat Simple_repeat 1 32 0 1139 186 14 28 chr3 66980401 66980616 -151056542 - AluJo SINE Alu -30 282 71 274 333 94 29 chr3 66981596 66981767 -151055391 + MIR SINE MIR 80 261 -1 183 306 56 28 chr3 66981897 66981969 -151055189 - L3 LINE CR1 -907 670 597 1226 268 85 12 chr3 66982386 66982879 -151054279 - L1MC4a LINE L1 -1907 5901 5373 358 313 73 33 chr3 66982896 66983171 -151053987 - L1MC4a LINE L1 -837 5309 5024 1534 179 77 9 chr3 66983172 66983497 -151053661 - MLT1A1 LTR MaLR 0 365 19 301 312 9 9 chr3 66983498 66983607 -151053551 - L1MC4a LINE L1 -1101 5045 4937 212 226 0 19 chr3 66983796 66983849 -151053309 + L2 LINE L2 3262 3313 0 188 318 40 73 chr3 66984187 66984338 -151052820 - L2 LINE L2 -911 2403 2258 254 321 79 55 chr3 66986257 66986422 -151050736 - MIR SINE MIR 0 262 94 226 280 274 0 chr3 66986847 66987004 -151050154 + MIR SINE MIR 37 236 -26 793 268 40 31 chr3 66988051 66988376 -151048782 + LTR16C LTR ERVL 153 480 -11 403 186 23 0 chr3 66988381 66988467 -151048691 - MLT1E2 LTR MaLR -4 622 535 210 238 0 0 chr3 66988675 66988717 -151048441 + (CATA)n Simple_repeat Simple_repeat 2 43 0 1983 145 3 10 chr3 66988720 66989067 -151048091 - AluSx SINE Alu 0 345 1 291 295 107 40 chr3 66989997 66990146 -151047012 + MIR SINE MIR 2 160 -102 319 179 0 0 chr3 66990689 66990745 -151046413 + MER20 DNA MER1_type 161 216 -3 194 355 0 0 chr3 66991168 66991230 -151045928 + MIR3 SINE MIR 110 171 -37 214 280 0 0 chr3 66991738 66991788 -151045370 + L2 LINE L2 3264 3313 0 321 355 14 7 chr3 66991833 66991971 -151045187 + CT-rich Low_complexity Low_complexity 6 144 0 315 0 0 0 chr3 66992124 66992159 -151044999 + (TG)n Simple_repeat Simple_repeat 1 35 0 384 345 34 5 chr3 66993148 66993357 -151043801 + MIR SINE MIR 48 262 0 606 252 93 31 chr3 66995085 66995311 -151041847 - MIR SINE MIR -2 260 21 330 293 171 11 chr3 66996893 66997074 -151040084 - MIR SINE MIR -12 250 41 4127 64 2 6 chr3 66997878 66998378 -151038780 + L1PA8 LINE L1 5669 6166 -6 231 125 0 0 chr3 66998528 66998568 -151038590 + (TGGA)n Simple_repeat Simple_repeat 1 40 0 4936 160 28 14 chr3 66999280 67000203 -151036955 - L1MB7 LINE L1 -16 6168 5236 402 21 0 0 chr3 67001204 67001251 -151035907 + (TG)n Simple_repeat Simple_repeat 1 47 0 25 83 0 0 chr3 67002346 67002406 -151034752 + AT_rich Low_complexity Low_complexity 1 60 0 1799 153 67 74 chr3 67002476 67002867 -151034291 - MSTD LTR MaLR -8 388 1 479 309 116 14 chr3 67003828 67004035 -151033123 + MIR SINE MIR 25 252 -10 3476 241 36 14 chr3 67005169 67006859 -151030299 - L1MEc LINE L1 -494 5741 1337 792 230 51 15 chr3 67006906 67008068 -151029090 - L1M4 LINE L1 -2666 3480 2176 * 35066 40 4 1 chr3 67008062 67013076 -151024082 - L1PA4 LINE L1 -2 6153 1126 635 303 67 37 chr3 67013841 67014303 -151022855 + LTR33 LTR ERVL 46 521 0 458 290 83 57 chr3 67015134 67015443 -151021715 - L2 LINE L2 -294 3019 2692 735 202 94 37 chr3 67015468 67015630 -151021528 - MIR SINE MIR -55 207 41 1024 169 92 34 chr3 67015830 67016037 -151021121 - MER20 DNA MER1_type 0 219 1 655 217 72 22 chr3 67016805 67016985 -151020173 - L1MC5 LINE L1 -50 7911 7723 23 0 0 0 chr3 67017112 67017135 -151020023 + AT_rich Low_complexity Low_complexity 1 23 0 235 312 138 0 chr3 67017666 67017775 -151019383 - L2 LINE L2 0 3272 3149 349 263 207 66 chr3 67018293 67018506 -151018652 + MIR SINE MIR 7 249 -13 2284 112 0 0 chr3 67018570 67018864 -151018294 + AluSx SINE Alu 2 295 -17 251 283 101 104 chr3 67019129 67019426 -151017732 - L2 LINE L2 -7 3265 2970 293 204 0 0 chr3 67021578 67021627 -151015531 - L2 LINE L2 -15 3257 3209 259 231 0 16 chr3 67021741 67021862 -151015296 + GA-rich Low_complexity Low_complexity 1 119 0 195 42 0 0 chr3 67021880 67021904 -151015254 + (CAAAA)n Simple_repeat Simple_repeat 4 27 0 27 0 0 0 chr3 67021974 67022001 -151015157 + AT_rich Low_complexity Low_complexity 1 27 0 2013 162 14 29 chr3 67022293 67022869 -151014289 + L1M4 LINE L1 4967 5535 -639 831 219 0 0 chr3 67022969 67023129 -151014029 - MER3 DNA MER1_type -47 162 3 2567 200 23 102 chr3 67023130 67023774 -151013384 + MLT1E LTR MaLR 1 593 0 534 324 22 0 chr3 67024045 67024224 -151012934 + MIR SINE MIR 52 234 -28 693 223 139 51 chr3 67025548 67025763 -151011395 + MIR SINE MIR 4 237 -25 1039 177 0 142 chr3 67025819 67026079 -151011079 + MER58A DNA MER1_type 1 223 -1 297 322 51 90 chr3 67026747 67027201 -151009957 - L2 LINE L2 -11 3261 2826 1830 116 62 7 chr3 67027228 67027503 -151009655 - AluSq SINE Alu -23 290 1 327 331 48 42 chr3 67027875 67028041 -151009117 - L2 LINE L2 -221 3051 2885 588 241 43 37 chr3 67028116 67028303 -151008855 - L2 LINE L2 -540 2774 2587 8578 177 111 19 chr3 67029278 67030886 -151006272 + MER52A LTR ERV1 1 1755 0 339 324 11 8 chr3 67030891 67031079 -151006079 - MIR SINE MIR -13 249 2 814 245 56 0 chr3 67032319 67032515 -151004643 - MIR SINE MIR -43 219 13 1775 206 118 13 chr3 67032601 67033066 -151004092 + L1ME2 LINE L1 5643 6156 -8 399 21 0 0 chr3 67033066 67033114 -151004044 + (CA)n Simple_repeat Simple_repeat 2 49 0 564 290 90 55 chr3 67033264 67033740 -151003418 - L1MC4a LINE L1 -1879 5929 5437 279 0 0 0 chr3 67034243 67034274 -151002884 + (T)n Simple_repeat Simple_repeat 1 31 0 2277 84 0 39 chr3 67035133 67035444 -151001714 - AluY SINE Alu -12 299 1 180 0 0 0 chr3 67036160 67036180 -151000978 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 396 0 0 0 chr3 67036179 67036223 -151000935 + (TG)n Simple_repeat Simple_repeat 2 45 0 815 123 18 0 chr3 67036223 67036337 -151000821 - FLAM_A SINE Alu -14 119 4 518 335 92 35 chr3 67037143 67037668 -150999490 + L2 LINE L2 2761 3313 0 2283 84 0 3 chr3 67038974 67039272 -150997886 - AluY SINE Alu -14 297 1 344 246 29 87 chr3 67039334 67039472 -150997686 + MIR SINE MIR 132 261 -1 248 270 81 14 chr3 67040406 67040480 -150996678 - Charlie8 DNA MER1_type 0 2417 2339 239 257 81 0 chr3 67040564 67040638 -150996520 - MLT1H LTR MaLR -16 579 500 * 321 270 47 88 chr3 67040629 67040903 -150996255 - MLT1H LTR MaLR -166 383 121 2396 88 0 0 chr3 67041562 67041857 -150995301 + AluSc SINE Alu 13 307 -2 859 198 173 42 chr3 67041873 67042232 -150994926 - MLT1I LTR MaLR -3 406 1 207 304 13 38 chr3 67042341 67042420 -150994738 - MIR SINE MIR -78 130 54 1546 111 0 5 chr3 67044376 67044592 -150992566 - L1PB1 LINE L1 -1 6150 5936 232 208 68 90 chr3 67046017 67046146 -150991012 + MIR SINE MIR 30 152 -56 297 179 11 67 chr3 67046964 67047059 -150990099 + MIR SINE MIR 103 189 -61 312 317 149 30 chr3 67047160 67047422 -150989736 - L3 LINE CR1 -17 1560 1268 284 274 57 16 chr3 67047443 67047567 -150989591 - L1ME4a LINE L1 -18 6103 5975 774 243 11 0 chr3 67047786 67047967 -150989191 - L1MD2 LINE L1 -20 6339 6157 2211 89 3 0 chr3 67048002 67048324 -150988834 - AluY SINE Alu 0 323 1 620 219 119 0 chr3 67048330 67048361 -150988797 - L1MD2 LINE L1 -175 6184 6158 294 29 0 0 chr3 67048361 67048396 -150988762 + (TG)n Simple_repeat Simple_repeat 2 36 0 620 219 119 0 chr3 67048396 67048515 -150988643 - L1MD2 LINE L1 -201 6158 6016 204 217 0 0 chr3 67048745 67048791 -150988367 + L2 LINE L2 3268 3313 0 317 200 231 77 chr3 67048809 67048939 -150988219 - L2 LINE L2 -13 3300 3151 2149 150 39 9 chr3 67049135 67049468 -150987690 + MER2 DNA MER2_type 2 344 0 2719 118 43 19 chr3 67049502 67049924 -150987234 - MSTB1 LTR MaLR 0 432 1 183 80 0 0 chr3 67051116 67051141 -150986017 + (T)n Simple_repeat Simple_repeat 1 25 0 603 284 40 15 chr3 67051658 67051859 -150985299 - MLT1J LTR MaLR -109 402 197 320 217 33 158 chr3 67051887 67052039 -150985119 - L2 LINE L2 -5 3308 3176 485 199 158 34 chr3 67052054 67052200 -150984958 - MLT1J LTR MaLR -345 166 3 197 354 118 24 chr3 67052336 67052624 -150984534 + L3 LINE CR1 1074 1388 -189 300 158 0 0 chr3 67052821 67052878 -150984280 + A-rich Low_complexity Low_complexity 1 57 0 237 263 0 0 chr3 67053255 67053312 -150983846 - MIR SINE MIR -92 170 114 2053 129 0 3 chr3 67054142 67054429 -150982729 + AluJb SINE Alu 24 309 -3 685 173 24 8 chr3 67054622 67054749 -150982409 + MER20 DNA MER1_type 9 137 -82 252 333 98 15 chr3 67055072 67055276 -150981882 - Charlie8 DNA MER1_type -2196 221 1 453 291 82 20 chr3 67055542 67055738 -150981420 + MIR SINE MIR 24 231 -31 263 222 12 62 chr3 67058642 67058723 -150978435 - MIR SINE MIR -99 163 87 2651 16 9 28 chr3 67059689 67060006 -150977152 + AluYa5 SINE Alu 1 311 0 582 298 6 6 chr3 67060015 67060186 -150976972 - MIR3 SINE MIR -30 178 8 690 248 122 33 chr3 67060670 67060884 -150976274 - LTR16A LTR ERVL -8 442 210 259 337 0 0 chr3 67061157 67061258 -150975900 - MIR SINE MIR -58 204 104 208 308 64 13 chr3 67061565 67061643 -150975515 - L2 LINE L2 -17 3296 3215 398 224 243 13 chr3 67061895 67062047 -150975111 + MIR3 SINE MIR 7 193 -15 504 179 80 46 chr3 67062720 67062871 -150974287 - MER103 DNA DNA -1 165 10 22 0 0 0 chr3 67063319 67063341 -150973817 + AT_rich Low_complexity Low_complexity 1 22 0 2073 122 6 32 chr3 67064911 67065223 -150971935 - AluSx SINE Alu -8 304 1 218 149 85 0 chr3 67065277 67065324 -150971834 + MIR SINE MIR 48 98 -164 620 295 167 45 chr3 67065564 67065984 -150971174 + L2 LINE L2 2843 3313 0 252 192 141 20 chr3 67066012 67066111 -150971047 + MER117 DNA MER1_type 9 119 -78 614 269 202 19 chr3 67066941 67067302 -150969856 + MARNA DNA Mariner 73 499 -87 536 304 40 5 chr3 67067694 67067903 -150969255 + MIR SINE MIR 37 250 -12 223 279 0 16 chr3 67068156 67068217 -150968941 + (CATATA)n Simple_repeat Simple_repeat 4 63 0 2141 142 0 0 chr3 67069042 67069352 -150967806 - AluSx SINE Alu 0 312 3 461 273 39 32 chr3 67069672 67069826 -150967332 - L2 LINE L2 -236 3036 2882 208 267 144 33 chr3 67069845 67069935 -150967223 + MIR SINE MIR 152 251 -11 7760 75 4 8 chr3 67070465 67071470 -150965688 - L1P LINE L1 -5137 1009 9 258 283 83 14 chr3 67071482 67071627 -150965531 - L1ME LINE L1 -4102 2159 2005 882 125 0 0 chr3 67071629 67071773 -150965385 + (TCCCC)n Simple_repeat Simple_repeat 4 147 0 1380 213 4 22 chr3 67071792 67072064 -150965094 - AluJo SINE Alu -37 275 9 2452 224 142 55 chr3 67072071 67072130 -150965028 - L1ME LINE L1 -4105 1975 1923 1621 203 3 13 chr3 67072130 67072435 -150964723 - AluJo SINE Alu -10 302 1 2452 224 142 55 chr3 67072435 67073091 -150964067 - L1ME LINE L1 -4157 1923 1326 183 42 0 0 chr3 67073091 67073115 -150964043 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2452 224 142 55 chr3 67073115 67073272 -150963886 - L1ME LINE L1 -4754 1326 1184 1434 194 20 40 chr3 67073272 67073571 -150963587 + AluJb SINE Alu 1 293 -19 2452 224 142 55 chr3 67073571 67073958 -150963200 - L1ME LINE L1 -4896 1184 832 1684 181 28 0 chr3 67073958 67074240 -150962918 - AluJb SINE Alu -22 290 1 2452 224 142 55 chr3 67074240 67074521 -150962637 - L1ME LINE L1 -5248 832 327 223 186 0 0 chr3 67074594 67074637 -150962521 + (CTG)n Simple_repeat Simple_repeat 3 45 0 300 261 34 23 chr3 67074826 67074914 -150962244 - L1ME LINE L1 -5980 90 2 630 180 4 38 chr3 67075732 67075989 -150961169 + CT-rich Low_complexity Low_complexity 1 248 0 365 322 126 15 chr3 67076599 67076798 -150960360 - MIR SINE MIR -15 247 27 289 307 100 27 chr3 67076850 67077000 -150960158 + MER117 DNA MER1_type 34 194 -3 535 149 19 0 chr3 67077124 67077231 -150959927 + CT-rich Low_complexity Low_complexity 3 111 0 257 291 0 0 chr3 67077318 67077404 -150959754 + (TAA)n Simple_repeat Simple_repeat 3 88 0 191 291 166 60 chr3 67078391 67078542 -150958616 + MER5A DNA MER1_type 1 167 -22 681 293 60 71 chr3 67078660 67078941 -150958217 - MLT1J1 LTR MaLR 0 446 170 2092 176 5 54 chr3 67078941 67079351 -150957807 + MLT1B LTR MaLR 1 390 0 681 293 60 71 chr3 67079351 67079520 -150957638 - MLT1J1 LTR MaLR -276 170 1 1611 70 0 0 chr3 67080275 67080474 -150956684 + AluY SINE Alu 1 199 -112 1346 43 0 6 chr3 67080474 67080635 -150956523 + AluY SINE Alu 152 311 0 3332 155 28 26 chr3 67081260 67081911 -150955247 + L1MB8 LINE L1 5501 6152 -26 180 306 102 46 chr3 67082284 67082392 -150954766 - L2 LINE L2 -193 3079 2966 426 253 6 16 chr3 67082423 67082605 -150954553 + (ATG)n Simple_repeat Simple_repeat 1 180 0 262 225 42 0 chr3 67082995 67083066 -150954092 - MER116 DNA Mariner -5 75 2 283 272 0 22 chr3 67083099 67083191 -150953967 - L1MC4 LINE L1 -1339 6703 6614 * 304 198 0 62 chr3 67083113 67083209 -150953949 + L1MC4 LINE L1 6614 6703 -1339 239 161 21 108 chr3 67083215 67083308 -150953850 + L1MC4 LINE L1 6640 6724 -1318 1379 156 138 0 chr3 67083433 67083716 -150953442 + MER33 DNA MER1_type 3 324 0 252 272 72 97 chr3 67084895 67085090 -150952068 - MLT1J LTR MaLR -202 309 120 269 294 20 0 chr3 67085163 67085265 -150951893 + L1MC4 LINE L1 6613 6716 -1326 570 280 55 20 chr3 67085455 67085655 -150951503 - MIR SINE MIR -48 214 8 210 216 0 39 chr3 67086920 67086971 -150950187 + A-rich Low_complexity Low_complexity 5 53 0 244 196 39 0 chr3 67089248 67089299 -150947859 + (TATG)n Simple_repeat Simple_repeat 4 56 0 663 199 57 0 chr3 67089833 67089974 -150947184 + L1MB4 LINE L1 6032 6180 0 180 0 0 0 chr3 67089983 67090003 -150947155 + (GGGAGA)n Simple_repeat Simple_repeat 6 25 0 242 342 32 13 chr3 67090034 67090192 -150946966 + L2 LINE L2 2976 3136 -177 2737 167 14 22 chr3 67090201 67090704 -150946454 - L1MB7 LINE L1 -41 6143 5645 226 288 25 0 chr3 67090777 67090857 -150946301 + L1MC4 LINE L1 6614 6695 -1347 305 74 0 19 chr3 67092956 67093010 -150944148 + (CAAAC)n Simple_repeat Simple_repeat 1 53 0 2129 127 0 0 chr3 67093079 67093379 -150943779 - AluSx SINE Alu -12 300 1 1783 173 19 3 chr3 67093432 67093744 -150943414 - L1MB3 LINE L1 -9 6174 5858 1885 173 7 7 chr3 67093820 67094127 -150943031 - AluJb SINE Alu -5 307 1 784 152 24 156 chr3 67094247 67094497 -150942661 + MER20 DNA MER1_type 1 217 -2 211 339 0 16 chr3 67094628 67094690 -150942468 - L2 LINE L2 -50 3263 3203 24 0 0 0 chr3 67094815 67094839 -150942319 + AT_rich Low_complexity Low_complexity 1 24 0 338 330 8 0 chr3 67094907 67095025 -150942133 + MIR3 SINE MIR 42 160 -48 2138 116 10 0 chr3 67095129 67095431 -150941727 - AluSx SINE Alu -7 305 1 24 53 0 0 chr3 67095699 67095737 -150941421 + AT_rich Low_complexity Low_complexity 1 38 0 414 0 0 0 chr3 67096480 67096526 -150940632 + (TG)n Simple_repeat Simple_repeat 2 47 0 228 197 70 42 chr3 67096637 67096708 -150940450 + MER117 DNA MER1_type 119 191 -6 469 337 88 6 chr3 67096845 67097026 -150940132 + MIR SINE MIR 61 256 -6 1481 212 33 65 chr3 67097062 67097491 -150939667 + MLT1C LTR MaLR 53 467 0 335 284 85 23 chr3 67098143 67098344 -150938814 + MIR SINE MIR 29 241 -21 205 220 40 0 chr3 67098310 67098360 -150938798 + L2 LINE L2 3212 3263 -9 * 218 222 40 87 chr3 67098360 67098486 -150938672 - L2 LINE L2 -12 3301 3182 1894 133 14 0 chr3 67099263 67099542 -150937616 + AluJo SINE Alu 5 287 -25 277 208 4 0 chr3 67099555 67099635 -150937523 - L1ME4a LINE L1 -38 6044 1232 201 195 0 0 chr3 67099646 67099687 -150937471 + CT-rich Low_complexity Low_complexity 1 41 0 441 36 0 0 chr3 67100635 67100690 -150936468 + (GA)n Simple_repeat Simple_repeat 2 56 0 3401 151 2 7 chr3 67100718 67101386 -150935772 + L1PA14 LINE L1 5511 6162 -1 2730 16 0 0 chr3 67101854 67102158 -150935000 - AluYa5 SINE Alu -7 304 1 2028 156 30 3 chr3 67102180 67102508 -150934650 + MER1B DNA MER1_type 1 337 0 1652 251 62 11 chr3 67102671 67103217 -150933941 - L1ME3A LINE L1 -2 6168 5595 751 298 77 15 chr3 67104043 67104379 -150932779 - MLT1J LTR MaLR -145 366 10 203 305 0 0 chr3 67104436 67104495 -150932663 + CT-rich Low_complexity Low_complexity 2 60 0 297 289 19 58 chr3 67105154 67105258 -150931900 + MIR SINE MIR 31 130 -132 21 0 0 0 chr3 67105261 67105282 -150931876 + AT_rich Low_complexity Low_complexity 1 21 0 662 297 67 5 chr3 67105608 67105803 -150931355 + MIR SINE MIR 42 248 -14 2089 104 3 7 chr3 67105836 67106143 -150931015 - THE1B LTR MaLR 0 364 59 267 285 250 6 chr3 67106251 67106423 -150930735 + Charlie8 DNA MER1_type 117 1417 -1000 766 267 52 17 chr3 67106585 67106817 -150930341 - MIR SINE MIR 0 262 23 297 275 88 50 chr3 67107007 67107189 -150929969 - MIR SINE MIR -22 240 52 730 169 27 93 chr3 67107823 67108006 -150929152 - MER5A DNA MER1_type 0 189 19 2132 46 4 4 chr3 67108018 67108281 -150928877 - AluY SINE Alu -8 303 41 273 349 61 58 chr3 67108354 67108750 -150928408 - L2 LINE L2 -16 3297 2901 216 67 0 0 chr3 67109025 67109055 -150928103 + (CCA)n Simple_repeat Simple_repeat 3 32 0 2249 108 0 0 chr3 67109097 67109384 -150927774 + AluSx SINE Alu 7 293 -19 1694 186 85 38 chr3 67112781 67113223 -150923935 + MLT1E3 LTR MaLR 139 587 -6 360 294 97 13 chr3 67114670 67114908 -150922250 - L1ME4a LINE L1 -94 6027 5770 219 146 0 0 chr3 67114936 67114977 -150922181 + (CA)n Simple_repeat Simple_repeat 1 41 0 181 128 43 21 chr3 67115014 67115061 -150922097 + (TATG)n Simple_repeat Simple_repeat 3 50 0 588 222 65 16 chr3 67115364 67115549 -150921609 - MER3 DNA MER1_type -5 204 11 621 286 89 5 chr3 67115851 67116075 -150921083 - MIR SINE MIR -18 244 2 293 318 82 18 chr3 67118756 67118866 -150918292 - L2 LINE L2 -7 3265 3149 248 325 41 8 chr3 67118999 67119122 -150918036 - MIR SINE MIR -52 210 84 * 764 183 33 20 chr3 67119115 67119268 -150917890 - MER5B DNA MER1_type -4 174 20 207 326 65 11 chr3 67119306 67119398 -150917760 - MIR SINE MIR -153 109 13 426 294 24 0 chr3 67119599 67119725 -150917433 - MIR SINE MIR -22 240 112 799 143 0 0 chr3 67119733 67119866 -150917292 - L1PA15 LINE L1 -219 5946 5814 583 215 27 7 chr3 67119869 67120018 -150917140 + L1PB4 LINE L1 5991 6142 -14 23 54 0 0 chr3 67120267 67120304 -150916854 + AT_rich Low_complexity Low_complexity 1 37 0 208 295 46 112 chr3 67120688 67121081 -150916077 - L2 LINE L2 -734 2580 2214 1790 191 8 11 chr3 67121232 67121598 -150915560 - MLT1A1 LTR MaLR 0 365 1 1624 174 0 56 chr3 67121926 67122247 -150914911 - AluJb SINE Alu -9 303 1 381 256 62 67 chr3 67122619 67122786 -150914372 - L1ME3A LINE L1 -14 6156 5989 6909 57 6 2 chr3 67122786 67124179 -150912979 - L1PA7 LINE L1 0 6154 4758 381 256 62 67 chr3 67124179 67124206 -150912952 - L1ME3A LINE L1 -181 5989 5963 1911 149 126 45 chr3 67124229 67124277 -150912881 - MSTA LTR MaLR 0 428 385 270 0 0 0 chr3 67124277 67124307 -150912851 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1982 134 3 0 chr3 67124309 67124592 -150912566 - AluSx SINE Alu -28 284 1 1911 149 126 45 chr3 67124592 67124936 -150912222 - MSTA LTR MaLR -43 385 1 6856 117 6 10 chr3 67125540 67127097 -150910061 + L1MA3 LINE L1 4753 6305 0 361 314 25 0 chr3 67127632 67127753 -150909405 - L2 LINE L2 -9 3304 3181 307 353 38 0 chr3 67127829 67127962 -150909196 - MIR3 SINE MIR -26 182 45 545 308 23 53 chr3 67128972 67129238 -150907920 + L2 LINE L2 2423 2680 -634 913 205 76 29 chr3 67130114 67130324 -150906834 + MER58A DNA MER1_type 5 224 0 481 230 34 34 chr3 67130607 67130755 -150906403 + MER117 DNA MER1_type 9 156 -41 3357 172 118 12 chr3 67131016 67131798 -150905360 - L1MB3 LINE L1 0 6183 5318 539 243 157 24 chr3 67133544 67133754 -150903404 + MIR SINE MIR 13 250 -12 330 107 0 0 chr3 67134103 67134159 -150902999 + (TG)n Simple_repeat Simple_repeat 2 57 0 28 29 0 0 chr3 67134311 67134346 -150902812 + AT_rich Low_complexity Low_complexity 1 35 0 957 291 121 17 chr3 67134622 67135035 -150902123 + L2 LINE L2 2858 3313 0 246 238 62 0 chr3 67135064 67135144 -150902014 - L1ME3A LINE L1 -294 5876 5792 1344 195 0 0 chr3 67135247 67135462 -150901696 - AluJo SINE Alu -93 219 5 304 333 20 20 chr3 67135469 67135619 -150901539 - L1ME3A LINE L1 -2028 5780 5631 287 162 50 0 chr3 67135632 67135708 -150901450 - MLT1H LTR MaLR 0 615 491 580 233 161 63 chr3 67135745 67136033 -150901125 - MLT1H LTR MaLR -169 373 41 397 324 98 19 chr3 67136298 67136554 -150900604 + MLT1J2 LTR MaLR 23 298 -152 291 203 76 0 chr3 67136550 67136629 -150900529 + MLT1J1 LTR MaLR 358 442 -4 * 1261 174 58 81 chr3 67136754 67137286 -150899872 - L1MB8 LINE L1 -4 6176 5683 381 306 232 24 chr3 67137637 67138016 -150899142 - L2 LINE L2 0 3313 2856 253 274 162 30 chr3 67139273 67139470 -150897688 + Tigger8 DNA MER2_type 184 406 -260 22 0 0 0 chr3 67141216 67141238 -150895920 + AT_rich Low_complexity Low_complexity 1 22 0 1321 161 22 13 chr3 67141364 67141588 -150895570 + AluJo SINE Alu 83 308 -4 307 227 53 76 chr3 67141833 67141965 -150895193 - L1ME4a LINE L1 -65 6056 5928 530 256 15 41 chr3 67343084 67343279 -150693879 + MIR SINE MIR 73 262 0 26 30 0 0 chr3 67343292 67343325 -150693833 + AT_rich Low_complexity Low_complexity 1 33 0 186 170 191 21 chr3 67343325 67343372 -150693786 - MIR SINE MIR -98 164 110 464 243 171 7 chr3 67343789 67343929 -150693229 + MIR SINE MIR 30 192 -70 195 42 0 0 chr3 67344191 67344215 -150692943 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 317 290 55 41 chr3 67344921 67345066 -150692092 - MIR3 SINE MIR -35 173 27 602 255 22 114 chr3 67345788 67346059 -150691099 - MIR SINE MIR -2 260 15 24 0 0 0 chr3 67346248 67346272 -150690886 + AT_rich Low_complexity Low_complexity 1 24 0 983 200 5 0 chr3 67348927 67349117 -150688041 + MLT1A1 LTR MaLR 171 361 -4 22 0 0 0 chr3 67350094 67350116 -150687042 + AT_rich Low_complexity Low_complexity 1 22 0 234 195 0 0 chr3 67350749 67350790 -150686368 + U2 snRNA snRNA 1 41 -147 1638 186 38 0 chr3 67351185 67351476 -150685682 - AluJb SINE Alu -9 303 2 1400 186 48 33 chr3 67351559 67351893 -150685265 + MER44D DNA MER2_type 1 609 0 935 309 19 24 chr3 67352443 67352822 -150684336 - LTR16C LTR ERVL 0 491 115 250 333 48 0 chr3 67352940 67353024 -150684134 - L2 LINE L2 -1 3271 3184 330 324 0 7 chr3 67353985 67354130 -150683028 - MER117 DNA MER1_type -47 150 7 240 306 14 0 chr3 67354187 67354259 -150682899 + GA-rich Low_complexity Low_complexity 4 76 0 777 154 17 17 chr3 67354745 67355102 -150682056 + (TA)n Simple_repeat Simple_repeat 1 357 0 54 0 0 0 chr3 67355115 67355169 -150681989 + AT_rich Low_complexity Low_complexity 1 54 0 293 161 47 0 chr3 67355169 67355318 -150681840 + (TA)n Simple_repeat Simple_repeat 2 157 0 180 77 0 0 chr3 67355338 67355364 -150681794 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 318 106 0 0 chr3 67356620 67356667 -150680491 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 361 390 99 24 chr3 67356670 67357003 -150680155 - L2 LINE L2 0 3272 2915 197 158 0 26 chr3 67357353 67357391 -150679767 - MIR SINE MIR -60 148 112 22 0 0 0 chr3 67358245 67358267 -150678891 + AT_rich Low_complexity Low_complexity 1 22 0 234 339 31 62 chr3 67359216 67359346 -150677812 + L2 LINE L2 3145 3270 -2 573 177 152 30 chr3 67359984 67360148 -150677010 + MLT1K LTR MaLR 395 578 -10 330 297 9 9 chr3 67361885 67361996 -150675162 + MIR SINE MIR 36 146 -62 840 259 17 17 chr3 67362070 67362302 -150674856 - MIR SINE MIR 0 262 31 284 296 37 19 chr3 67364261 67364369 -150672789 - MIR SINE MIR -30 232 123 220 233 0 0 chr3 67365191 67365234 -150671924 - L2 LINE L2 -9 3304 3262 298 361 101 34 chr3 67365256 67365552 -150671606 + L3 LINE CR1 1062 1377 -200 1894 115 0 11 chr3 67367793 67368054 -150669104 - AluSx SINE Alu -54 258 1 362 311 34 14 chr3 67368072 67368220 -150668938 - MLT1L LTR MaLR -96 519 369 1089 204 9 43 chr3 67368430 67368660 -150668498 + MER58A DNA MER1_type 3 224 0 439 275 157 71 chr3 67368976 67369427 -150667731 + L2 LINE L2 2815 3304 -9 257 333 50 10 chr3 67369509 67369608 -150667550 + L2 LINE L2 3208 3310 -3 238 350 125 12 chr3 67369689 67369849 -150667309 + L3 LINE CR1 1389 1566 -11 239 48 0 48 chr3 67370428 67370470 -150666688 + (TTTG)n Simple_repeat Simple_repeat 3 42 0 22 0 0 0 chr3 67371009 67371031 -150666127 + AT_rich Low_complexity Low_complexity 1 22 0 187 304 87 22 chr3 67371063 67371155 -150666003 + MER5A DNA MER1_type 36 133 -56 1842 158 0 0 chr3 67371640 67371912 -150665246 + AluSx SINE Alu 33 304 -8 22 35 0 0 chr3 67371993 67372022 -150665136 + AT_rich Low_complexity Low_complexity 1 29 0 355 331 121 12 chr3 67372810 67372976 -150664182 + MIR SINE MIR 5 188 -74 951 233 19 42 chr3 67372992 67373254 -150663904 - MIR SINE MIR -2 260 5 292 292 31 10 chr3 67374114 67374210 -150662948 - MER5A DNA MER1_type -11 178 81 * 306 308 45 15 chr3 67374126 67374259 -150662899 + MER5A DNA MER1_type 35 171 -18 346 271 76 31 chr3 67374555 67374692 -150662466 - MIR SINE MIR -37 171 26 246 361 57 16 chr3 67374811 67374933 -150662225 - MIR SINE MIR -128 134 8 1305 232 102 18 chr3 67375684 67376170 -150660988 - MER39 LTR ERV1 -5 702 10 332 335 6 61 chr3 67377074 67377238 -150659920 - MER5A DNA MER1_type -31 158 4 627 14 0 0 chr3 67377313 67377385 -150659773 + (TG)n Simple_repeat Simple_repeat 1 72 0 1042 153 39 0 chr3 67377793 67377996 -150659162 - L1MB7 LINE L1 -23 6161 5951 231 207 24 12 chr3 67378010 67378092 -150659066 - MER20B DNA MER1_type -39 744 662 284 305 17 0 chr3 67378145 67378263 -150658895 - L1MB7 LINE L1 -260 5861 5742 488 203 37 91 chr3 67380311 67380412 -150656746 - MER112 DNA MER1_type -1 259 171 2034 170 0 0 chr3 67380412 67380723 -150656435 - AluJb SINE Alu 0 312 2 488 203 37 91 chr3 67380723 67380808 -150656350 - MER112 DNA MER1_type -89 171 83 230 306 0 14 chr3 67381609 67381681 -150655477 - L3 LINE CR1 -91 1486 1416 22 0 0 0 chr3 67382732 67382754 -150654404 + AT_rich Low_complexity Low_complexity 1 22 0 210 278 19 0 chr3 67383148 67383202 -150653956 + (CATATA)n Simple_repeat Simple_repeat 5 59 0 189 405 0 14 chr3 67384531 67384605 -150652553 - L2 LINE L2 -214 3058 2986 315 281 23 138 chr3 67384663 67384880 -150652278 - L2 LINE L2 -42 3230 3039 326 314 47 78 chr3 67384987 67385242 -150651916 - MIR SINE MIR -15 247 1 302 251 12 19 chr3 67386025 67386138 -150651020 + MLT1G1 LTR MaLR 14 127 -422 2279 175 33 12 chr3 67386138 67386561 -150650597 - MSTB1 LTR MaLR 0 432 1 283 253 95 44 chr3 67386561 67386719 -150650439 + MLT1G1 LTR MaLR 171 336 -259 286 138 0 0 chr3 67386784 67386845 -150650313 - MLT1H1 LTR MaLR 0 567 495 2144 101 0 7 chr3 67386851 67387158 -150650000 + AluSq SINE Alu 1 305 0 353 254 59 8 chr3 67387360 67387478 -150649680 - MLT1H LTR MaLR -385 164 41 2217 123 3 0 chr3 67387571 67387873 -150649285 - AluSp SINE Alu -10 303 1 434 286 52 19 chr3 67387878 67388032 -150649126 - MIR3 SINE MIR -34 174 16 316 313 89 0 chr3 67388037 67388216 -150648942 - MER117 DNA MER1_type -2 195 1 330 225 50 67 chr3 67389778 67389898 -150647260 - MIR SINE MIR -85 177 60 401 284 14 7 chr3 67390061 67390202 -150646956 + MER103 DNA DNA 9 150 -16 550 267 71 24 chr3 67390457 67390712 -150646446 + MLT1I LTR MaLR 1 267 -142 377 333 33 16 chr3 67390772 67390955 -150646203 + MER117 DNA MER1_type 11 196 -1 210 304 29 29 chr3 67391918 67391987 -150645171 + L2 LINE L2 3204 3272 0 323 306 52 60 chr3 67392653 67392787 -150644371 - L2 LINE L2 -4 3268 3136 351 278 170 24 chr3 67393086 67393298 -150643860 - L2 LINE L2 -692 2622 2380 184 224 60 0 chr3 67394336 67394403 -150642755 + MIR SINE MIR 106 176 -86 2004 136 0 0 chr3 67394972 67395244 -150641914 + AluSx SINE Alu 1 272 -40 417 20 0 0 chr3 67395255 67395305 -150641853 + (CA)n Simple_repeat Simple_repeat 1 50 0 526 184 157 14 chr3 67395989 67396136 -150641022 + MER3 DNA MER1_type 1 168 -41 284 319 29 29 chr3 67396329 67396389 -150640769 - Charlie8 DNA MER1_type -2279 138 79 4483 199 27 34 chr3 67396389 67397479 -150639679 + Tigger6a DNA MER2_type 2 1083 0 284 319 29 29 chr3 67397479 67397556 -150639602 - Charlie8 DNA MER1_type -2337 80 1 2179 145 64 7 chr3 67397777 67398035 -150639123 - MER65A LTR ERV1 0 445 152 498 17 0 0 chr3 67398035 67398094 -150639064 + (TG)n Simple_repeat Simple_repeat 2 60 0 2179 145 64 7 chr3 67398094 67398256 -150638902 - MER65A LTR ERV1 -293 152 1 242 288 159 53 chr3 67398623 67398887 -150638271 + L2 LINE L2 3022 3313 0 220 160 20 20 chr3 67398887 67398937 -150638221 + (TGGA)n Simple_repeat Simple_repeat 2 51 0 28 0 0 0 chr3 67399000 67399028 -150638130 + AT_rich Low_complexity Low_complexity 1 28 0 532 312 92 11 chr3 67399208 67399490 -150637668 + L3 LINE CR1 853 1157 -420 355 276 103 26 chr3 67399621 67399737 -150637421 + MIR SINE MIR 21 145 -117 838 254 22 76 chr3 67399931 67400392 -150636766 + Charlie4a DNA MER1_type 1 436 -72 1369 209 31 0 chr3 67400393 67400647 -150636511 + AluJo SINE Alu 51 312 0 236 256 26 0 chr3 67400647 67400725 -150636433 + Charlie4a DNA MER1_type 429 508 0 391 204 293 7 chr3 67400914 67401061 -150636097 + MER3 DNA MER1_type 5 193 -16 406 256 146 23 chr3 67401074 67401382 -150635776 + L1MC5 LINE L1 7333 7678 -283 2268 104 13 0 chr3 67401382 67401691 -150635467 + AluSp SINE Alu 1 313 0 327 158 44 61 chr3 67401833 67401947 -150635211 + L1MC4 LINE L1 7926 8037 -5 228 261 138 0 chr3 67401952 67402017 -150635141 + MIR SINE MIR 184 257 -5 279 341 0 0 chr3 67402039 67402121 -150635037 + L3 LINE CR1 1293 1374 -203 427 291 0 0 chr3 67402209 67402312 -150634846 - MIR SINE MIR -17 245 143 282 287 125 15 chr3 67402290 67402426 -150634732 + L3 LINE CR1 1426 1576 -1 * 1872 94 71 4 chr3 67403431 67403686 -150633472 - AluSq SINE Alu -41 272 1 817 287 97 13 chr3 67404012 67404385 -150632773 - MLT1I LTR MaLR -2 407 4 207 0 0 0 chr3 67404932 67404955 -150632203 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2272 88 24 0 chr3 67405553 67405847 -150631311 - AluSx SINE Alu -11 301 1 2117 126 3 3 chr3 67405886 67406180 -150630978 - AluSx SINE Alu -18 294 1 423 293 47 61 chr3 67407035 67407466 -150629692 - MLT1F LTR MaLR -1 554 120 303 345 9 17 chr3 67407940 67408056 -150629102 + MIR SINE MIR 29 143 -119 239 296 37 0 chr3 67408109 67408190 -150628968 - L2 LINE L2 -1 3312 3229 2375 100 0 3 chr3 67408302 67408612 -150628546 - AluSc SINE Alu 0 309 1 1558 169 12 99 chr3 67410507 67410932 -150626226 - MLT1B LTR MaLR -2 388 1 264 295 63 0 chr3 67411108 67411203 -150625955 - L2 LINE L2 -20 3293 3193 294 341 154 24 chr3 67411551 67411759 -150625399 - MIR SINE MIR -27 235 1 258 32 0 0 chr3 67411832 67411863 -150625295 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 778 131 8 0 chr3 67413241 67413371 -150623787 + L1MB2 LINE L1 6002 6132 -39 2047 96 114 24 chr3 67413405 67413739 -150623419 - THE1B LTR MaLR 0 364 1 236 245 0 0 chr3 67413798 67413847 -150623311 + CT-rich Low_complexity Low_complexity 1 49 0 217 323 268 4 chr3 67413868 67414122 -150623036 - L2 LINE L2 -750 2564 2244 321 316 146 12 chr3 67415872 67416043 -150621115 - MIR SINE MIR -65 197 4 1615 189 58 21 chr3 67416075 67416340 -150620818 - MLT1B LTR MaLR 0 390 105 2082 146 0 0 chr3 67416340 67416648 -150620510 - AluY SINE Alu -3 308 1 1615 189 58 21 chr3 67416648 67416758 -150620400 - MLT1B LTR MaLR -285 105 1 541 214 26 0 chr3 67417458 67417575 -150619583 + Charlie5 DNA MER1_type 5 124 -2488 934 188 74 80 chr3 67417582 67417959 -150619199 + Charlie5 DNA MER1_type 2245 2619 0 257 323 54 116 chr3 67419088 67419382 -150617776 - L2 LINE L2 0 3272 2997 344 259 68 23 chr3 67419382 67419600 -150617558 + MER57A LTR ERV1 1 203 -200 504 231 15 30 chr3 67419601 67419735 -150617423 + MER66B LTR ERV1 1 132 -354 4693 165 3 33 chr3 67419735 67420595 -150616563 + MER66-int LTR ERV1 5286 6120 -556 336 200 50 0 chr3 67420599 67420679 -150616479 + MER57A LTR ERV1 320 403 0 212 250 29 15 chr3 67420822 67420890 -150616268 + L2 LINE L2 2692 2760 -554 244 96 41 27 chr3 67420919 67420992 -150616166 + (TA)n Simple_repeat Simple_repeat 2 75 0 375 160 0 43 chr3 67420999 67421093 -150616065 - MER53 DNA DNA -58 131 42 601 353 64 42 chr3 67421249 67421606 -150615552 + L2 LINE L2 2907 3271 -1 189 0 0 0 chr3 67422554 67422575 -150614583 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 409 318 24 33 chr3 67423772 67423983 -150613175 - MIR SINE MIR -6 256 48 362 288 75 71 chr3 67425315 67425527 -150611631 - MIR SINE MIR -19 243 31 1752 141 32 84 chr3 67425596 67425736 -150611422 + L1MB4 LINE L1 5763 5909 -271 1887 166 113 51 chr3 67425736 67426170 -150610988 + LOR1b LTR ERV1 1 461 0 1752 141 32 84 chr3 67426170 67426306 -150610852 + L1MB4 LINE L1 5909 6010 -170 2216 68 48 17 chr3 67426306 67426598 -150610560 - AluSc SINE Alu -2 307 7 1752 141 32 84 chr3 67426598 67426761 -150610397 + L1MB4 LINE L1 6010 6180 0 3024 178 66 12 chr3 67427197 67427878 -150609280 + MER50 LTR ERV1 1 718 -16 182 103 0 26 chr3 67428154 67428193 -150608965 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 320 355 143 10 chr3 67430562 67430765 -150606393 - MIR SINE MIR -13 249 20 487 277 51 43 chr3 67431840 67432096 -150605062 + L1MC4a LINE L1 5575 5832 -1976 23 68 0 0 chr3 67432369 67432413 -150604745 + AT_rich Low_complexity Low_complexity 1 44 0 369 304 49 62 chr3 67432994 67433218 -150603940 - MIR SINE MIR -34 228 8 487 269 53 62 chr3 67433435 67433643 -150603515 + MIR SINE MIR 12 217 -45 243 178 37 84 chr3 67434158 67434265 -150602893 + MLT1J LTR MaLR 399 500 -11 24 0 0 0 chr3 67434382 67434406 -150602752 + AT_rich Low_complexity Low_complexity 1 24 0 2442 60 40 0 chr3 67434814 67435112 -150602046 - AluY SINE Alu 0 311 2 261 0 0 0 chr3 67435492 67435521 -150601637 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2053 125 4 0 chr3 67436119 67436428 -150600730 + AluSx SINE Alu 1 310 0 240 250 105 0 chr3 67436631 67436707 -150600451 - MER91C DNA MER1_type -3 137 54 236 243 47 26 chr3 67437109 67437277 -150599881 + L1MC/D LINE L1 5754 5925 -297 324 339 31 31 chr3 67437599 67437729 -150599429 - L2 LINE L2 -3 3310 3181 306 325 89 8 chr3 67438080 67438203 -150598955 + L2 LINE L2 2948 3080 -192 197 265 92 61 chr3 67438324 67438422 -150598736 - MER5B DNA MER1_type -62 116 16 220 287 23 58 chr3 67438439 67438526 -150598632 + L2 LINE L2 3168 3251 -21 193 214 24 0 chr3 67438549 67438591 -150598567 - L2 LINE L2 -5 3267 3225 1091 186 69 29 chr3 67439290 67439596 -150597562 + MER33 DNA MER1_type 5 322 -2 2380 114 0 6 chr3 67439893 67440243 -150596915 + THE1B LTR MaLR 17 364 0 214 115 39 0 chr3 67440596 67440648 -150596510 + (CAA)n Simple_repeat Simple_repeat 1 54 0 833 271 41 9 chr3 67440671 67440892 -150596266 - MIR SINE MIR -19 243 16 226 309 60 77 chr3 67441693 67441978 -150595180 + L2 LINE L2 1745 2024 -1290 225 0 0 0 chr3 67442664 67442689 -150594469 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 421 234 14 28 chr3 67443693 67443834 -150593324 + MER103 DNA DNA 7 145 -21 24 0 0 0 chr3 67444887 67444911 -150592247 + AT_rich Low_complexity Low_complexity 1 24 0 1347 196 51 71 chr3 67445360 67445808 -150591350 + L1MC4 LINE L1 6579 7017 -1025 378 0 0 0 chr3 67445850 67445892 -150591266 + (CA)n Simple_repeat Simple_repeat 1 42 0 420 223 110 15 chr3 67445914 67446164 -150590994 + L1MA9 LINE L1 6021 6288 -3 2829 193 79 61 chr3 67446171 67447108 -150590050 + L1MC4 LINE L1 7089 8042 0 236 380 72 0 chr3 67447161 67447327 -150589831 + MIR SINE MIR 85 262 0 221 274 71 24 chr3 67448697 67448781 -150588377 - L2 LINE L2 0 3272 3185 205 301 0 14 chr3 67449191 67449264 -150587894 + GA-rich Low_complexity Low_complexity 1 72 0 311 293 47 63 chr3 67449281 67449472 -150587686 + MER5A DNA MER1_type 1 188 -1 5214 138 36 1 chr3 67450140 67451752 -150585406 - L1PA16 LINE L1 -9 6157 4518 1025 232 5 0 chr3 67451814 67452025 -150585133 - MER58A DNA MER1_type -10 214 3 262 194 32 16 chr3 67452093 67452155 -150585003 + LTR50 LTR ERVL 8 70 -725 203 343 29 0 chr3 67452567 67452637 -150584521 - L2 LINE L2 0 3272 3201 230 301 158 0 chr3 67453913 67454046 -150583112 + MIR SINE MIR 86 239 -23 2337 148 28 35 chr3 67454096 67454530 -150582628 - MSTB1 LTR MaLR -1 431 1 6152 218 56 15 chr3 67454530 67456050 -150581108 - MSTB1-int LTR MaLR 0 1651 70 1770 193 42 20 chr3 67456073 67456482 -150580676 - MSTB1 LTR MaLR 0 432 15 280 300 69 39 chr3 67456511 67456641 -150580517 + MIR3 SINE MIR 10 143 -65 420 225 0 0 chr3 67456999 67457079 -150580079 + L2 LINE L2 3234 3313 0 320 345 120 0 chr3 67457485 67457627 -150579531 + L2 LINE L2 3110 3268 -4 207 176 0 0 chr3 67457640 67457674 -150579484 + (TGGA)n Simple_repeat Simple_repeat 3 36 0 521 204 69 3 chr3 67457792 67457937 -150579221 - MLT1A1 LTR MaLR 0 365 228 455 213 11 0 chr3 67457978 67458072 -150579086 - MLT1A1 LTR MaLR -268 97 3 374 247 22 0 chr3 67458136 67458225 -150578933 - MIR SINE MIR 0 262 172 2498 140 39 2 chr3 67459722 67460135 -150577023 + MSTA LTR MaLR 1 428 0 1279 191 60 97 chr3 67461225 67461728 -150575430 - MLT1D LTR MaLR -1 504 21 1725 154 0 7 chr3 67461760 67462045 -150575113 + MER1B DNA MER1_type 57 339 0 312 172 0 0 chr3 67462971 67463029 -150574129 + GA-rich Low_complexity Low_complexity 1 58 0 278 367 20 7 chr3 67463960 67464110 -150573048 - MIR3 SINE MIR -48 160 9 1557 214 136 52 chr3 67464194 67464777 -150572381 - LTR27 LTR ERV1 -2 634 3 712 182 0 63 chr3 67465067 67465210 -150571948 + FLAM_C SINE Alu 1 134 -9 1829 127 47 133 chr3 67465630 67465885 -150571273 + Tigger2a DNA MER2_type 9 208 -2500 7715 21 0 0 chr3 67465885 67466886 -150570272 - L1PA4 LINE L1 -3 6152 5153 1829 127 47 133 chr3 67466886 67467096 -150570062 + Tigger2a DNA MER2_type 208 434 0 469 236 230 0 chr3 67467502 67467676 -150569482 - MIR SINE MIR -33 229 16 258 214 243 0 chr3 67467918 67467988 -150569170 + Tigger5 DNA MER2_type 2234 2320 -3 192 293 0 0 chr3 67467997 67468038 -150569120 + L2 LINE L2 3198 3238 -75 1792 91 4 25 chr3 67468322 67468563 -150568595 + AluSx SINE Alu 58 293 -19 523 332 128 32 chr3 67469147 67469905 -150567253 + L2 LINE L2 2508 3313 0 551 344 171 30 chr3 67469910 67470348 -150566810 + L2 LINE L2 2772 3272 0 555 295 40 87 chr3 67471450 67471982 -150565176 - MER34 LTR ERV1 -35 507 1 3975 189 18 7 chr3 67474058 67474783 -150562375 + MER44D DNA MER2_type 1 605 0 204 40 0 0 chr3 67475316 67475341 -150561817 + (T)n Simple_repeat Simple_repeat 1 25 0 925 291 19 12 chr3 67475552 67475872 -150561286 - MER93a LTR ERV1 0 402 81 2144 129 3 0 chr3 67476829 67477131 -150560027 - AluSp SINE Alu -10 303 1 488 298 48 24 chr3 67478667 67478835 -150558323 + MIR SINE MIR 5 176 -86 262 333 35 0 chr3 67479944 67480058 -150557100 + L2 LINE L2 2233 2350 -964 261 232 12 12 chr3 67480134 67480216 -150556942 - MLT1L LTR MaLR -13 602 521 305 219 12 24 chr3 67480274 67480356 -150556802 - LTR33A LTR ERVL 0 523 443 683 303 33 43 chr3 67481187 67481487 -150555671 + L2 LINE L2 3017 3313 0 589 103 22 110 chr3 67481791 67481889 -150555269 + L1MB2 LINE L1 6047 6152 -19 2541 55 0 3 chr3 67481889 67482201 -150554957 + AluY SINE Alu 1 311 0 333 0 0 0 chr3 67482206 67482243 -150554915 + (TA)n Simple_repeat Simple_repeat 1 37 0 589 103 22 110 chr3 67482243 67482274 -150554884 + L1MB2 LINE L1 6156 6170 -1 23 33 0 0 chr3 67482275 67482305 -150554853 + AT_rich Low_complexity Low_complexity 1 30 0 390 335 74 11 chr3 67482312 67482488 -150554670 - MIR SINE MIR -51 211 25 1493 187 8 0 chr3 67482659 67482921 -150554237 - AluJb SINE Alu -6 306 43 253 217 58 0 chr3 67483522 67483591 -150553567 + L1P LINE L1 5334 5406 -759 296 234 107 91 chr3 67483744 67484193 -150552965 + L1ME4a LINE L1 5636 6091 -30 24 0 0 0 chr3 67485561 67485585 -150551573 + AT_rich Low_complexity Low_complexity 1 24 0 225 0 0 0 chr3 67485664 67485689 -150551469 + (A)n Simple_repeat Simple_repeat 1 25 0 271 262 34 81 chr3 67486091 67486263 -150550895 + MER5A DNA MER1_type 1 168 -12 1632 172 28 31 chr3 67486287 67486577 -150550581 - AluJo SINE Alu -23 289 1 25 51 0 0 chr3 67486580 67486619 -150550539 + AT_rich Low_complexity Low_complexity 1 39 0 277 128 0 0 chr3 67486756 67486795 -150550363 - MIR SINE MIR -95 113 75 1743 114 0 84 chr3 67486902 67487210 -150549948 + AluSx SINE Alu 21 302 -10 2196 125 3 7 chr3 67487238 67487542 -150549616 - AluSx SINE Alu -9 303 1 252 253 111 19 chr3 67487544 67487706 -150549452 + MER104 DNA Tc2 4 180 0 239 380 21 26 chr3 67487982 67488174 -150548984 + L2 LINE L2 2677 2867 -447 341 359 34 38 chr3 67488239 67488476 -150548682 + L2 LINE L2 3005 3240 -32 452 192 0 0 chr3 67489495 67489573 -150547585 + Tigger7 DNA MER2_type 7 84 -255 2045 142 7 0 chr3 67489573 67489875 -150547283 + AluSx SINE Alu 1 304 -8 336 24 0 0 chr3 67489875 67489916 -150547242 + (CA)n Simple_repeat Simple_repeat 2 42 0 387 0 0 0 chr3 67492137 67492180 -150544978 + (TA)n Simple_repeat Simple_repeat 1 43 0 * 534 16 0 0 chr3 67492179 67492242 -150544916 + (GA)n Simple_repeat Simple_repeat 2 64 0 889 196 0 13 chr3 67492243 67492396 -150544762 - FRAM SINE Alu -33 143 1 180 250 50 33 chr3 67493114 67493174 -150543984 - MER5A DNA MER1_type -94 95 35 * 186 268 18 36 chr3 67493121 67493177 -150543981 + MER5A DNA MER1_type 115 169 -20 488 262 45 17 chr3 67493335 67493500 -150543658 + MIR SINE MIR 24 187 -61 2101 103 50 0 chr3 67493519 67493801 -150543357 + AluSx SINE Alu 1 296 -16 265 250 29 0 chr3 67493801 67493899 -150543259 + (TATATG)n Simple_repeat Simple_repeat 5 105 0 182 235 39 20 chr3 67494048 67494099 -150543059 - L2 LINE L2 -2 3270 3219 342 333 16 0 chr3 67494103 67494232 -150542926 + LTR33 LTR ERVL 15 145 -376 1512 160 6 94 chr3 67495759 67496090 -150541068 - AluJb SINE Alu 0 312 11 2497 125 30 14 chr3 67496342 67496711 -150540447 + THE1C LTR MaLR 1 375 0 212 351 21 11 chr3 67496979 67497073 -150540085 + L2 LINE L2 3153 3247 -25 2088 124 30 3 chr3 67497212 67497511 -150539647 - AluSc SINE Alu -2 307 1 288 351 70 0 chr3 67498355 67498469 -150538689 + MIR3 SINE MIR 69 190 -18 439 345 69 13 chr3 67498486 67498718 -150538440 - MIR SINE MIR -10 252 8 332 22 22 0 chr3 67498915 67498960 -150538198 + (TG)n Simple_repeat Simple_repeat 2 47 0 249 236 0 0 chr3 67498962 67499017 -150538141 + L1MC4 LINE L1 6648 6702 -1340 238 276 0 0 chr3 67499044 67499120 -150538038 - L1MC4 LINE L1 -1339 6703 6628 231 244 0 24 chr3 67499140 67499222 -150537936 - L1MC4 LINE L1 -1349 6693 6614 195 222 0 0 chr3 67499224 67499269 -150537889 + (TA)n Simple_repeat Simple_repeat 1 45 0 959 157 99 0 chr3 67499281 67499472 -150537686 + MER2 DNA MER2_type 1 210 -135 358 326 72 64 chr3 67499863 67500558 -150536600 + L2 LINE L2 2556 3312 -1 244 250 25 25 chr3 67503111 67503191 -150533967 + GA-rich Low_complexity Low_complexity 4 83 0 469 280 78 32 chr3 67504089 67504307 -150532851 + L2 LINE L2 3073 3300 -13 475 329 108 6 chr3 67504867 67505034 -150532124 + MER91A DNA MER1_type 10 193 -3 194 236 164 0 chr3 67505893 67505948 -150531210 + MIR SINE MIR 84 147 -61 203 290 93 28 chr3 67506723 67506830 -150530328 - MIR SINE MIR -47 215 102 259 296 88 48 chr3 67507781 67507906 -150529252 + L2 LINE L2 3138 3267 -5 2073 133 0 0 chr3 67508019 67508304 -150528854 + AluSg1 SINE Alu 8 292 -17 315 299 60 54 chr3 67508383 67508567 -150528591 + MLT1K LTR MaLR 2 186 -402 2397 96 3 0 chr3 67508746 67509048 -150528110 - AluSp SINE Alu -10 303 1 523 351 70 0 chr3 67510298 67510540 -150526618 + MIR SINE MIR 2 260 -2 22 0 0 0 chr3 67510600 67510622 -150526536 + AT_rich Low_complexity Low_complexity 1 22 0 1450 169 3 86 chr3 67510655 67510992 -150526166 - AluJo SINE Alu -2 310 2 500 230 57 73 chr3 67511366 67511805 -150525353 + MLT1H LTR MaLR 4 542 0 286 251 0 168 chr3 67512470 67512649 -150524509 - MIR SINE MIR -33 229 81 1338 174 36 12 chr3 67512774 67513021 -150524137 - L1MA6 LINE L1 -5 6295 6043 376 235 6 6 chr3 67514461 67514558 -150522600 + MER63 DNA MER1_type 732 1052 -8 354 331 73 76 chr3 67517779 67518123 -150519035 + MLT1K LTR MaLR 18 360 -228 2228 97 3 10 chr3 67518157 67518467 -150518691 - AluSp SINE Alu -5 308 1 518 266 0 9 chr3 67518666 67518779 -150518379 - FLAM_A SINE Alu -18 124 13 2178 115 0 3 chr3 67518806 67519102 -150518056 + AluSx SINE Alu 1 295 -17 1043 298 79 16 chr3 67519485 67520222 -150516936 + L2 LINE L2 2523 3313 0 271 296 45 38 chr3 67520917 67521049 -150516109 - L1MC/D LINE L1 -2266 5542 5410 198 0 0 0 chr3 67521535 67521557 -150515601 + (A)n Simple_repeat Simple_repeat 1 22 0 490 292 127 35 chr3 67522005 67522265 -150514893 - L2 LINE L2 -2 3311 3028 1123 86 0 0 chr3 67522289 67522428 -150514730 - MER85 DNA T2_type 0 139 1 1604 148 93 14 chr3 67523084 67523362 -150513796 + AluJb SINE Alu 1 300 -12 306 291 66 56 chr3 67523634 67523847 -150513311 + MLT1K LTR MaLR 19 233 -355 2274 89 7 0 chr3 67524242 67524535 -150512623 + AluSg SINE Alu 1 295 -15 1662 198 3 10 chr3 67524637 67524930 -150512228 + AluJb SINE Alu 1 291 -21 25 0 0 0 chr3 67525105 67525130 -150512028 + AT_rich Low_complexity Low_complexity 1 25 0 30 45 0 0 chr3 67525252 67525296 -150511862 + AT_rich Low_complexity Low_complexity 1 44 0 401 288 36 0 chr3 67525512 67525651 -150511507 + MIR3 SINE MIR 62 205 -3 2275 235 47 22 chr3 67526286 67526485 -150510673 + MER90 LTR ERV1 6 198 -416 2199 108 27 0 chr3 67526485 67526782 -150510376 - AluSq SINE Alu -8 305 1 2275 235 47 22 chr3 67526782 67527174 -150509984 + MER90 LTR ERV1 198 612 -2 587 189 101 0 chr3 67527189 67527306 -150509852 - MER106B DNA MER1_type -1 1058 922 1845 172 0 0 chr3 67527306 67527591 -150509567 - AluJb SINE Alu -27 285 1 587 189 101 0 chr3 67527591 67527621 -150509537 - MER106B DNA MER1_type -137 922 896 579 298 28 55 chr3 67527765 67528020 -150509138 - MIR SINE MIR 0 262 15 321 82 0 0 chr3 67528295 67528344 -150508814 + (TG)n Simple_repeat Simple_repeat 2 50 0 198 0 0 0 chr3 67528999 67529021 -150508137 + (GA)n Simple_repeat Simple_repeat 2 23 0 204 361 174 14 chr3 67530725 67530938 -150506220 - MIR SINE MIR -13 249 3 344 246 18 27 chr3 67531332 67531442 -150505716 - MIR SINE MIR -134 128 20 304 294 81 96 chr3 67531620 67531827 -150505331 + L2 LINE L2 2854 3054 -218 1038 198 84 0 chr3 67531827 67532029 -150505129 - MER20 DNA MER1_type 0 219 1 304 294 81 96 chr3 67532029 67532215 -150504943 + L2 LINE L2 3054 3241 -31 222 191 0 0 chr3 67533399 67533441 -150503717 + L2 LINE L2 3272 3313 0 554 317 114 9 chr3 67534615 67534842 -150502316 - MIR SINE MIR -8 254 4 208 293 102 48 chr3 67535128 67535275 -150501883 + L2 LINE L2 2871 3025 -288 214 304 0 0 chr3 67535548 67535604 -150501554 + (TA)n Simple_repeat Simple_repeat 2 57 0 1464 191 44 4 chr3 67535923 67536196 -150500962 + AluJb SINE Alu 1 284 -28 587 338 60 25 chr3 67538301 67538615 -150498543 + MLT1K LTR MaLR 242 566 -22 22 0 0 0 chr3 67539807 67539829 -150497329 + AT_rich Low_complexity Low_complexity 1 22 0 216 111 0 0 chr3 67539848 67539884 -150497274 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 1063 203 35 18 chr3 67539884 67540111 -150497047 - AluJo SINE Alu -24 288 58 301 351 45 72 chr3 67540127 67540425 -150496733 - L2 LINE L2 -10 3303 3020 2025 110 3 38 chr3 67540425 67540744 -150496414 - AluSp SINE Alu 0 311 3 301 351 45 72 chr3 67540744 67540931 -150496227 - L2 LINE L2 -293 3020 2830 288 0 0 0 chr3 67542055 67542087 -150495071 + (TA)n Simple_repeat Simple_repeat 2 33 0 2337 79 7 0 chr3 67542088 67542380 -150494778 - AluSc SINE Alu -15 294 1 280 386 53 8 chr3 67542683 67542816 -150494342 - MIR SINE MIR -81 127 20 1293 199 19 19 chr3 67542816 67543083 -150494075 - L1MB5 LINE L1 0 6174 5908 232 290 16 0 chr3 67543095 67543157 -150494001 + L2 LINE L2 3250 3312 -1 857 196 14 79 chr3 67544059 67544241 -150492917 + MER3 DNA MER1_type 2 171 -38 2165 106 3 0 chr3 67544241 67544544 -150492614 + AluSx SINE Alu 1 304 0 857 196 14 79 chr3 67544544 67544574 -150492584 + MER3 DNA MER1_type 171 201 -8 1988 124 4 0 chr3 67546478 67546753 -150490405 + AluSx SINE Alu 4 279 -33 354 245 19 0 chr3 67546938 67547044 -150490114 - MER103 DNA DNA -8 158 51 412 323 85 5 chr3 67547296 67547485 -150489673 - MIR SINE MIR -13 249 46 2301 107 3 7 chr3 67549307 67549616 -150487542 - AluSx SINE Alu -4 308 1 323 250 14 0 chr3 67549627 67549699 -150487459 - MIR SINE MIR -112 150 78 641 202 271 9 chr3 67550173 67550391 -150486767 - MER41B LTR ERV1 -190 445 171 1659 156 7 28 chr3 67550669 67550952 -150486206 + AluJo SINE Alu 5 281 -31 198 0 0 0 chr3 67550954 67550976 -150486182 + (CAAT)n Simple_repeat Simple_repeat 3 24 0 219 69 0 0 chr3 67551084 67551113 -150486045 + (A)n Simple_repeat Simple_repeat 1 29 0 2057 135 0 0 chr3 67551286 67551607 -150485551 + AluSx SINE Alu 1 321 0 654 169 39 7 chr3 67551996 67552150 -150485008 - L1MC3 LINE L1 -13 7772 7614 1185 194 35 4 chr3 67552158 67552385 -150484773 - AluJo SINE Alu -8 304 71 3742 201 42 16 chr3 67552408 67553319 -150483839 - L1MC3 LINE L1 -157 7628 6695 3279 191 48 43 chr3 67553353 67554608 -150482550 - L1MC3 LINE L1 -743 5403 4832 210 71 0 0 chr3 67556370 67556398 -150480760 + (T)n Simple_repeat Simple_repeat 1 28 0 213 245 0 0 chr3 67558525 67558574 -150478584 + A-rich Low_complexity Low_complexity 1 49 0 2073 118 0 49 chr3 67558637 67558765 -150478393 + AluSx SINE Alu 1 134 -178 1469 33 28 0 chr3 67558765 67558945 -150478213 + L1PA3 LINE L1 5968 6152 -3 2073 118 0 49 chr3 67558945 67559122 -150478036 + AluSx SINE Alu 134 291 -21 29 0 0 0 chr3 67559267 67559296 -150477862 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr3 67559910 67559934 -150477224 + AT_rich Low_complexity Low_complexity 1 24 0 2075 122 7 16 chr3 67560135 67560439 -150476719 + AluSq SINE Alu 1 301 -12 206 356 96 0 chr3 67561872 67561945 -150475213 - L2 LINE L2 -89 3183 3104 3836 155 16 18 chr3 67562113 67563054 -150474104 + L1PB3 LINE L1 4488 5431 -723 2007 147 0 0 chr3 67563054 67563367 -150473791 + AluSq SINE Alu 1 313 0 3836 155 16 18 chr3 67563367 67563728 -150473430 + L1PB3 LINE L1 5431 5791 -363 359 178 0 9 chr3 67563728 67563835 -150473323 + (TA)n Simple_repeat Simple_repeat 1 106 0 2289 126 11 8 chr3 67563835 67564200 -150472958 + L1PB3 LINE L1 5782 6147 -7 2507 163 17 56 chr3 67564264 67564785 -150472373 - MLT1D LTR MaLR -2 503 3 414 145 16 32 chr3 67564851 67564975 -150472183 + (CATA)n Simple_repeat Simple_repeat 4 125 0 903 172 180 4 chr3 67565374 67565635 -150471523 + MER33 DNA MER1_type 18 324 0 429 293 62 44 chr3 67565771 67565996 -150471162 - L3 LINE CR1 -82 1495 1267 265 306 16 0 chr3 67567461 67567585 -150469573 + MER112 DNA MER1_type 122 247 -13 209 297 172 47 chr3 67569083 67569211 -150467947 - L2 LINE L2 0 3272 3129 646 133 0 0 chr3 67569527 67569617 -150467541 - FLAM_A SINE Alu -19 123 34 417 322 20 13 chr3 67570288 67570437 -150466721 + MIR3 SINE MIR 16 165 -43 578 223 65 44 chr3 67571188 67571417 -150465741 + L1MD2 LINE L1 6125 6358 -1 2211 123 58 8 chr3 67572000 67572397 -150464761 + L1MA2 LINE L1 5883 6299 -5 466 303 70 45 chr3 67572401 67572433 -150464725 + L1ME LINE L1 5313 5343 -778 1869 146 0 64 chr3 67572433 67572761 -150464397 - AluJb SINE Alu -5 307 1 466 303 70 45 chr3 67572761 67573064 -150464094 + L1ME LINE L1 5343 5653 -468 1101 174 10 20 chr3 67573079 67573280 -150463878 + AluJb SINE Alu 100 298 -14 2317 50 0 78 chr3 67573997 67574349 -150462809 + AluY SINE Alu 1 327 0 183 100 0 0 chr3 67575326 67575356 -150461802 + (TG)n Simple_repeat Simple_repeat 2 31 0 219 336 86 35 chr3 67577050 67577166 -150459992 - L2 LINE L2 0 3313 3192 184 362 14 65 chr3 67577458 67577596 -150459562 - L2 LINE L2 -9 3263 3133 3004 66 2 5 chr3 67577836 67578232 -150458926 + L1PA8A LINE L1 5724 6118 -13 368 270 31 21 chr3 67578364 67578566 -150458592 + L1P LINE L1 4881 5084 -1062 1311 269 27 66 chr3 67578689 67579420 -150457738 + L1MC4a LINE L1 5259 5961 -1847 222 288 0 0 chr3 67579420 67579479 -150457679 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 280 323 8 15 chr3 67581249 67581382 -150455776 - MLT1K LTR MaLR -3 585 454 3976 158 0 6 chr3 67582666 67583345 -150453813 + L1PA16 LINE L1 5476 6150 -16 1576 127 48 0 chr3 67583380 67583609 -150453549 + AluSg SINE Alu 1 240 -70 978 95 0 0 chr3 67583609 67583760 -150453398 + AluSg/x SINE Alu 157 307 0 665 316 98 35 chr3 67585581 67586006 -150451152 + L2 LINE L2 2595 3042 -271 978 167 115 0 chr3 67586110 67586380 -150450778 + Charlie1 DNA MER1_type 2461 2761 0 289 284 23 23 chr3 67586937 67587025 -150450133 - MIR SINE MIR -152 110 23 336 48 0 0 chr3 67587028 67587070 -150450088 + (CATA)n Simple_repeat Simple_repeat 3 44 0 21 0 0 0 chr3 67587734 67587755 -150449403 + AT_rich Low_complexity Low_complexity 1 21 0 525 240 47 13 chr3 67587923 67588073 -150449085 + MER69A DNA AcHobo 19 173 -4 25 0 0 0 chr3 67588600 67588625 -150448533 + AT_rich Low_complexity Low_complexity 1 25 0 529 323 77 24 chr3 67589540 67590044 -150447114 + L2 LINE L2 2593 3124 -189 253 351 11 11 chr3 67590146 67590240 -150446918 + L2 LINE L2 3204 3297 -16 321 68 0 0 chr3 67590370 67590414 -150446744 + (TTCA)n Simple_repeat Simple_repeat 2 45 0 378 58 0 0 chr3 67590627 67590679 -150446479 - MADE1 DNA Mariner 0 80 29 1184 64 0 0 chr3 67590679 67590819 -150446339 + AluSg SINE Alu 1 140 -170 21 0 0 0 chr3 67590819 67590840 -150446318 + AT_rich Low_complexity Low_complexity 1 21 0 1175 105 0 0 chr3 67590929 67591082 -150446076 + AluSg SINE Alu 139 291 -19 294 51 0 0 chr3 67591082 67591121 -150446037 - MADE1 DNA Mariner -41 39 1 512 262 149 14 chr3 67591356 67591577 -150445581 - MIR SINE MIR -8 254 4 184 191 0 64 chr3 67592401 67592448 -150444710 - MIR SINE MIR -207 55 12 387 0 0 0 chr3 67592873 67592916 -150444242 + (TTTTA)n Simple_repeat Simple_repeat 3 45 0 1952 131 18 0 chr3 67592916 67593191 -150443967 - AluSx SINE Alu -32 280 1 2427 82 3 0 chr3 67594361 67594665 -150442493 + AluSp SINE Alu 1 305 -8 1086 188 4 58 chr3 67596383 67596682 -150440476 + L1MB7 LINE L1 5902 6184 0 21 0 0 0 chr3 67596667 67596688 -150440470 + AT_rich Low_complexity Low_complexity 1 21 0 * 355 289 237 0 chr3 67596696 67596831 -150440327 + MIR SINE MIR 25 191 -71 212 403 0 0 chr3 67596916 67596993 -150440165 + MIR SINE MIR 73 149 -59 316 246 156 16 chr3 67597032 67597154 -150440004 - MIR SINE MIR -70 192 54 2014 137 7 10 chr3 67597313 67597619 -150439539 + AluSq SINE Alu 9 313 0 1390 197 24 31 chr3 67597870 67598159 -150438999 + AluJo SINE Alu 3 289 -23 856 203 25 10 chr3 67598233 67598435 -150438723 - MER3 DNA MER1_type -3 206 2 1813 164 17 3 chr3 67598877 67599176 -150437982 - AluSx SINE Alu -9 303 1 248 191 0 0 chr3 67599375 67599422 -150437736 + L1MC4 LINE L1 6656 6702 -1340 586 268 111 13 chr3 67599494 67599729 -150437429 - L1ME3A LINE L1 -43 6127 5870 467 231 99 8 chr3 67599795 67599916 -150437242 - MIR SINE MIR -3 259 128 872 207 57 5 chr3 67599920 67600113 -150437045 + MLT2C1 LTR ERVL 14 216 -181 277 322 177 38 chr3 67600695 67601040 -150436118 + L2 LINE L2 2350 2742 -572 586 203 97 90 chr3 67601047 67601347 -150435811 + L1MC5 LINE L1 7624 7925 -36 420 226 34 160 chr3 67601518 67601816 -150435342 + L2 LINE L2 2911 3138 -175 2528 96 16 33 chr3 67601816 67602182 -150434976 + THE1B LTR MaLR 1 360 -4 420 226 34 160 chr3 67602182 67602320 -150434838 + L2 LINE L2 3138 3292 -21 2162 114 3 3 chr3 67603393 67603699 -150433459 - AluSg SINE Alu -4 306 1 180 125 0 0 chr3 67605420 67605452 -150431706 + (T)n Simple_repeat Simple_repeat 1 32 0 254 318 37 9 chr3 67605664 67605771 -150431387 - MIR SINE MIR -37 225 116 2036 122 6 32 chr3 67606024 67606335 -150430823 + AluSx SINE Alu 1 303 -9 21 36 0 0 chr3 67606506 67606534 -150430624 + AT_rich Low_complexity Low_complexity 1 28 0 1321 208 24 20 chr3 67607448 67607746 -150429412 + AluJo SINE Alu 1 299 -13 280 317 19 61 chr3 67608044 67608209 -150428949 + MIR3 SINE MIR 44 200 -46 191 211 39 19 chr3 67609819 67609871 -150427287 - MER5B DNA MER1_type -28 150 98 370 292 64 41 chr3 67610579 67610750 -150426408 + L2 LINE L2 3112 3286 -27 283 309 16 32 chr3 67610750 67610873 -150426285 + MLT1J LTR MaLR 1 121 -390 243 304 0 0 chr3 67610890 67610946 -150426212 + MLT1J LTR MaLR 226 281 -230 233 283 0 0 chr3 67610985 67611045 -150426113 + (CATATA)n Simple_repeat Simple_repeat 4 63 0 299 198 86 12 chr3 67611449 67611530 -150425628 - L2 LINE L2 -67 3246 3160 361 325 191 29 chr3 67613634 67614052 -150423106 + L1MC1 LINE L1 5355 5840 -1968 298 204 139 9 chr3 67614227 67614335 -150422823 - L2 LINE L2 -603 2711 2590 1519 181 59 3 chr3 67615096 67615399 -150421759 + L1MC1 LINE L1 6008 6327 -6 627 254 0 8 chr3 67615413 67615636 -150421522 + FLAM_A SINE Alu 1 222 0 610 311 29 5 chr3 67615860 67616069 -150421089 + MIR SINE MIR 49 262 0 1946 241 75 4 chr3 67616870 67617376 -150419782 + MER34 LTR ERV1 1 542 0 306 352 25 25 chr3 67617537 67617699 -150419459 + MLT1K LTR MaLR 84 245 -343 288 0 0 0 chr3 67617860 67617892 -150419266 + (CA)n Simple_repeat Simple_repeat 2 33 0 303 309 21 0 chr3 67617892 67617922 -150419236 + GA-rich Low_complexity Low_complexity 1 29 -70 2133 148 37 3 chr3 67617922 67618274 -150418884 - THE1B LTR MaLR 0 364 1 303 309 21 0 chr3 67618274 67618340 -150418818 + GA-rich Low_complexity Low_complexity 29 99 0 1421 163 13 73 chr3 67620453 67620753 -150416405 + AluJo SINE Alu 22 303 -9 2307 78 0 25 chr3 67620879 67621198 -150415960 + AluY SINE Alu 1 311 0 228 250 150 8 chr3 67622128 67622248 -150414910 - L1MC4 LINE L1 -1 8041 7905 363 288 24 96 chr3 67623547 67623797 -150413361 - MER102a DNA MER1_type 0 330 99 802 93 0 0 chr3 67623943 67624051 -150413107 + AluSg/x SINE Alu 201 308 -4 488 216 4 18 chr3 67624510 67624648 -150412510 + MLT1A1 LTR MaLR 267 365 0 380 291 70 26 chr3 67624672 67624824 -150412334 - MIR SINE MIR -65 143 8 1224 190 60 37 chr3 67625079 67625427 -150411731 + LTR37A LTR ERV1 71 426 0 2284 114 31 0 chr3 67625872 67626230 -150410928 + L1PA11 LINE L1 5798 6166 -8 324 0 0 0 chr3 67626236 67626272 -150410886 + (CA)n Simple_repeat Simple_repeat 2 37 0 364 130 72 14 chr3 67626416 67626485 -150410673 + MER92B LTR ERV1 1 73 -563 383 167 0 0 chr3 67626588 67626654 -150410504 + MER92C LTR ERV1 487 552 -2 1077 231 59 62 chr3 67626743 67627116 -150410042 - MER39 LTR ERV1 0 707 336 304 231 39 58 chr3 67627113 67627217 -150409941 - LTR48B LTR ERV1 -539 105 4 * 621 294 4 32 chr3 67627694 67627922 -150409236 - MIR SINE MIR 0 262 44 24 32 0 0 chr3 67628516 67628547 -150408611 + AT_rich Low_complexity Low_complexity 1 31 0 3364 135 19 76 chr3 67628789 67629462 -150407696 + MER41B LTR ERV1 1 635 0 1203 222 71 81 chr3 67629894 67630360 -150406798 + MER39 LTR ERV1 109 707 0 450 241 69 0 chr3 67630382 67630527 -150406631 - LTR37B LTR ERV1 0 468 314 1065 189 104 131 chr3 67630529 67630941 -150406217 + MER92C LTR ERV1 1 401 -153 2253 256 77 13 chr3 67631001 67631903 -150405255 + L1ME1 LINE L1 5101 6054 -112 622 212 137 24 chr3 67633006 67633218 -150403940 - MER106A DNA MER1_type 0 236 1 3634 207 42 23 chr3 67633486 67634749 -150402409 + L1MB8 LINE L1 4883 6172 -6 541 264 19 19 chr3 67634770 67634929 -150402229 + HAL1 LINE L1 360 518 -1989 * 1182 290 72 23 chr3 67634919 67635478 -150401680 + HAL1 LINE L1 1880 2465 -42 1855 198 79 31 chr3 67636867 67637347 -150399811 + MLT1D LTR MaLR 1 503 -2 426 342 34 20 chr3 67637800 67637949 -150399209 - L2 LINE L2 0 3272 3122 1832 161 0 10 chr3 67639288 67639598 -150397560 + AluSq SINE Alu 1 307 -6 203 333 93 0 chr3 67639929 67640004 -150397154 + L2 LINE L2 3190 3271 -1 482 285 215 0 chr3 67640047 67640261 -150396897 - MIR SINE MIR -1 261 2 2083 110 3 20 chr3 67641498 67641798 -150395360 + AluSg SINE Alu 1 295 -15 27 29 0 0 chr3 67642113 67642147 -150395011 + AT_rich Low_complexity Low_complexity 1 34 0 352 337 70 84 chr3 67642217 67642576 -150394582 + L2 LINE L2 2914 3267 -5 1363 239 89 34 chr3 67643292 67643739 -150393419 + MER110 LTR ERV1 20 491 0 186 43 0 0 chr3 67643797 67643820 -150393338 + (CA)n Simple_repeat Simple_repeat 1 23 0 224 233 0 0 chr3 67643822 67643865 -150393293 + L2 LINE L2 3252 3294 -19 2289 88 3 0 chr3 67644163 67644457 -150392701 - AluY SINE Alu -16 295 1 2382 171 9 14 chr3 67644779 67645205 -150391953 - MSTB LTR MaLR 0 426 3 2808 156 22 67 chr3 67645418 67646058 -150391100 + LTR9 LTR ERV1 2 612 0 2756 256 71 15 chr3 67646095 67646970 -150390188 + L1MD3 LINE L1 46 969 -5076 2391 233 26 71 chr3 67646951 67647949 -150389209 + L1MD3 LINE L1 3298 4237 -2327 * 2144 99 0 3 chr3 67647949 67648233 -150388925 + AluY SINE Alu 29 311 0 2391 233 26 71 chr3 67648233 67648479 -150388679 + L1MD3 LINE L1 4237 4493 -2071 1046 273 131 36 chr3 67648484 67648928 -150388230 + MLT1D LTR MaLR 1 486 -19 1656 220 77 46 chr3 67648935 67650968 -150386190 + L1MD3 LINE L1 4492 6762 0 219 69 0 0 chr3 67651402 67651431 -150385727 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 57 0 0 chr3 67651519 67651554 -150385604 + AT_rich Low_complexity Low_complexity 1 35 0 448 220 0 0 chr3 67651585 67651685 -150385473 - L1MB7 LINE L1 -31 6153 6054 1004 241 61 51 chr3 67652994 67653405 -150383753 + LTR37B LTR ERV1 50 464 -4 461 253 71 40 chr3 67653664 67653724 -150383434 + MLT2C2 LTR ERVL 1 204 -260 594 217 0 22 chr3 67653724 67653862 -150383296 + MLT1E3 LTR MaLR 78 212 -412 271 259 0 0 chr3 67653865 67653923 -150383235 - MLT1G3 LTR MaLR -239 291 234 425 213 113 13 chr3 67653936 67654086 -150383072 - L1MA4 LINE L1 0 6300 6136 334 264 0 0 chr3 67654115 67654187 -150382971 - MLT1G3 LTR MaLR -306 224 153 2261 100 0 0 chr3 67655349 67655640 -150381518 - AluSx SINE Alu -21 291 1 202 224 0 41 chr3 67655713 67655762 -150381396 + MIR SINE MIR 206 252 -10 220 254 36 0 chr3 67655870 67655925 -150381233 + GA-rich Low_complexity Low_complexity 2 58 0 553 230 15 66 chr3 67655946 67656058 -150381100 + MIR SINE MIR 1 101 -161 1711 259 79 14 chr3 67656058 67656564 -150380594 - MLT1F LTR MaLR 0 542 4 553 230 15 66 chr3 67656564 67656668 -150380490 + MIR SINE MIR 101 209 -53 351 0 0 0 chr3 67656738 67656777 -150380381 + (TG)n Simple_repeat Simple_repeat 1 39 0 1373 261 54 0 chr3 67656807 67657252 -150379906 - Charlie4a DNA MER1_type -22 486 18 566 228 164 87 chr3 67658406 67658718 -150378440 + MLT1F1 LTR MaLR 1 361 -206 797 243 67 75 chr3 67659154 67659209 -150377949 + MLT1C LTR MaLR 75 129 -338 1625 186 43 138 chr3 67659209 67659885 -150377273 - LTR9 LTR ERV1 0 612 1 797 243 67 75 chr3 67659885 67660216 -150376942 + MLT1C LTR MaLR 129 458 -9 379 279 78 13 chr3 67662486 67662640 -150374518 - MIR3 SINE MIR 0 208 45 2171 180 34 14 chr3 67662789 67663234 -150373924 - L1MD1 LINE L1 -168 6468 6015 229 125 25 0 chr3 67663234 67663274 -150373884 - MSTB1 LTR MaLR 0 432 392 929 159 31 18 chr3 67663276 67663439 -150373719 + FAM SINE Alu 1 165 -10 2055 144 39 39 chr3 67663443 67663852 -150373306 - MSTB1 LTR MaLR -23 409 1 478 157 11 11 chr3 67663852 67663941 -150373217 - L1MD1 LINE L1 -619 6017 5929 341 250 0 0 chr3 67663938 67664014 -150373144 + L1M4 LINE L1 4863 4938 -1208 * 2135 112 50 34 chr3 67664024 67664382 -150372776 + THE1B LTR MaLR 1 364 0 240 254 30 0 chr3 67664382 67664439 -150372719 + GA-rich Low_complexity Low_complexity 8 69 0 2926 243 70 21 chr3 67664488 67665829 -150371329 - L1MD1 LINE L1 -743 5797 4525 2818 238 58 28 chr3 67665930 67666658 -150370500 - MER21B LTR ERV1 -113 750 1 712 277 66 0 chr3 67666667 67666941 -150370217 - L1MD1 LINE L1 -2014 4526 4235 2443 156 48 0 chr3 67666948 67667385 -150369773 + LTR24 LTR ERV1 10 467 0 540 224 0 9 chr3 67667412 67667528 -150369630 - L1MD1 LINE L1 -2336 4204 4090 630 179 16 0 chr3 67667588 67667711 -150369447 - L1MD1 LINE L1 -4585 1955 1831 2382 249 73 34 chr3 67667730 67668430 -150368728 - L1MD1 LINE L1 -5811 729 3 332 314 76 50 chr3 67668868 67669145 -150368013 + L2 LINE L2 2376 2659 -655 233 269 32 11 chr3 67671689 67671782 -150365376 + MLT1J LTR MaLR 101 195 -316 264 255 37 33 chr3 67671828 67672017 -150365141 + MLT1I LTR MaLR 266 409 0 432 274 8 0 chr3 67672591 67672708 -150364450 - MIR SINE MIR -24 238 121 496 193 102 28 chr3 67672759 67672935 -150364223 - MER53 DNA DNA 0 189 1 421 322 13 13 chr3 67676092 67676241 -150360917 - MIR SINE MIR -1 261 113 465 244 98 0 chr3 67676321 67676444 -150360714 + MIR SINE MIR 35 169 -93 309 51 0 0 chr3 67676663 67676702 -150360456 + (TA)n Simple_repeat Simple_repeat 1 39 0 390 211 32 57 chr3 67676705 67676828 -150360330 + LTR37B LTR ERV1 332 451 -17 180 328 69 0 chr3 67676841 67676899 -150360259 + MIR SINE MIR 165 226 -36 180 195 24 24 chr3 67678125 67678166 -150358992 + L2 LINE L2 3180 3220 -93 651 255 85 83 chr3 67678927 67679423 -150357735 - L1MC4 LINE L1 -3 8039 7539 180 0 0 0 chr3 67679423 67679443 -150357715 + (TG)n Simple_repeat Simple_repeat 2 21 0 651 255 85 83 chr3 67679443 67679672 -150357486 - L1MC4 LINE L1 -503 7539 7312 378 230 0 91 chr3 67680004 67680139 -150357019 - MIR3 SINE MIR -11 197 75 466 225 84 0 chr3 67680152 67680294 -150356864 - MER112 DNA MER1_type -41 219 66 1621 177 31 24 chr3 67680327 67680615 -150356543 - AluJo SINE Alu -22 290 1 365 252 19 56 chr3 67680754 67680861 -150356297 - MER5A DNA MER1_type -80 109 7 317 327 50 27 chr3 67681172 67681318 -150355840 - MIR SINE MIR -61 147 7 538 270 110 57 chr3 67682850 67682975 -150354183 + MLT1G LTR MaLR 1 118 -472 722 145 17 8 chr3 67682975 67683092 -150354066 + FLAM_C SINE Alu 1 118 -15 538 270 110 57 chr3 67683092 67683477 -150353681 + MLT1G LTR MaLR 118 590 0 1828 209 41 56 chr3 67683477 67684012 -150353146 - L1ME3 LINE L1 -25 6137 5611 321 341 60 24 chr3 67685039 67685206 -150351952 + MER5A DNA MER1_type 14 186 -3 286 170 28 19 chr3 67685720 67685826 -150351332 + (TA)n Simple_repeat Simple_repeat 2 108 0 2104 151 0 3 chr3 67685952 67686264 -150350894 - AluSx SINE Alu -1 311 1 195 42 0 0 chr3 67686639 67686663 -150350495 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2330 191 36 20 chr3 67686888 67687385 -150349773 - MLT1D LTR MaLR 0 505 1 289 332 43 11 chr3 67689285 67689370 -150347788 - MIR SINE MIR -5 257 176 1766 181 17 0 chr3 67689370 67689663 -150347495 + AluJb SINE Alu 1 298 -14 289 332 43 11 chr3 67689663 67689764 -150347394 - MIR SINE MIR -86 176 65 1854 214 6 3 chr3 67689839 67690203 -150346955 - MLT1A1 LTR MaLR 0 365 1 236 371 21 10 chr3 67690648 67690745 -150346413 - MIR SINE MIR -57 151 54 903 223 124 6 chr3 67691784 67692130 -150345028 + MER113 DNA MER1_type? 34 420 -101 278 296 120 0 chr3 67692345 67692453 -150344705 - MIR SINE MIR -140 122 2 2097 84 42 3 chr3 67692476 67692763 -150344395 + AluY SINE Alu 1 298 -13 3521 112 11 40 chr3 67694245 67694788 -150342370 - MER1A DNA MER1_type 0 527 1 318 282 30 64 chr3 67695202 67695436 -150341722 + L2 LINE L2 3027 3252 -61 256 282 36 109 chr3 67695441 67695492 -150341666 + L2 LINE L2 3168 3208 -64 957 230 9 26 chr3 67695492 67695718 -150341440 - MER58A DNA MER1_type 0 224 3 256 282 36 109 chr3 67695718 67695776 -150341382 + L2 LINE L2 3208 3269 -3 274 297 64 15 chr3 67695960 67696162 -150340996 - LTR33 LTR ERVL -8 513 302 2256 140 22 0 chr3 67696465 67696821 -150340337 - THE1B LTR MaLR 0 364 1 423 235 147 15 chr3 67698764 67698900 -150338258 + L1ME LINE L1 5583 5736 -385 263 302 134 49 chr3 67699126 67699439 -150337719 + L2 LINE L2 2682 3019 -294 2339 110 3 0 chr3 67699739 67700048 -150337110 + AluSp SINE Alu 3 312 -1 767 306 18 9 chr3 67700251 67700470 -150336688 - MIR SINE MIR -17 245 25 23 68 0 0 chr3 67701727 67701771 -150335387 + AT_rich Low_complexity Low_complexity 1 44 0 3405 129 0 2 chr3 67701836 67702333 -150334825 + LOR1a LTR ERV1 1 496 -1 1759 147 0 42 chr3 67702684 67702997 -150334161 + AluSg SINE Alu 7 306 -4 604 202 205 48 chr3 67703730 67704011 -150333147 + MER33 DNA MER1_type 5 363 0 659 171 182 28 chr3 67704745 67704926 -150332232 - MER3 DNA MER1_type 0 209 1 268 286 203 0 chr3 67705469 67705602 -150331556 + MIR SINE MIR 1 160 -102 308 257 86 29 chr3 67706532 67706662 -150330496 - FLAM_C SINE Alu 0 141 6 266 272 19 10 chr3 67707229 67707332 -150329826 + (TA)n Simple_repeat Simple_repeat 1 104 0 819 210 62 78 chr3 67708826 67708885 -150328273 - MER8 DNA MER2_type 0 239 181 1908 119 61 0 chr3 67708885 67709162 -150327996 - AluSg SINE Alu -16 294 1 819 210 62 78 chr3 67709162 67709345 -150327813 - MER8 DNA MER2_type -58 181 1 1679 154 22 25 chr3 67710051 67710390 -150326768 - MER61B LTR ERV1 -2 423 1 390 151 47 0 chr3 67710614 67710700 -150326458 - L1MB3 LINE L1 -10 6173 6084 458 267 30 0 chr3 67713900 67714035 -150323123 - MER104 DNA Tc2 -6 174 36 1623 180 28 16 chr3 67714569 67714891 -150322267 + MER61C LTR ERV1 109 434 0 24 53 0 0 chr3 67715052 67715090 -150322068 + AT_rich Low_complexity Low_complexity 1 38 0 189 0 0 0 chr3 67715869 67715890 -150321268 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 2288 101 0 0 chr3 67715934 67716232 -150320926 - AluSq SINE Alu -15 298 1 423 279 117 40 chr3 67716880 67717102 -150320056 + MLT1H LTR MaLR 115 353 -196 21 82 0 0 chr3 67717306 67717355 -150319803 + AT_rich Low_complexity Low_complexity 1 49 0 266 326 86 26 chr3 67718465 67718698 -150318460 - MER102b DNA MER1_type -49 292 46 232 253 13 67 chr3 67718821 67718896 -150318262 + MER5C DNA MER1_type 1 71 -253 1165 234 30 24 chr3 67718906 67719383 -150317775 + MLT1E LTR MaLR 19 593 0 311 297 51 34 chr3 67720200 67720318 -150316840 + L2 LINE L2 3178 3297 -16 1207 232 0 56 chr3 67720669 67720988 -150316170 - AluJo SINE Alu -11 301 1 304 292 178 11 chr3 67722062 67722343 -150314815 + L1ME4a LINE L1 5556 5883 -238 21 36 0 0 chr3 67722357 67722385 -150314773 + AT_rich Low_complexity Low_complexity 1 28 0 243 0 0 0 chr3 67724928 67724955 -150312203 + (A)n Simple_repeat Simple_repeat 1 27 0 1575 138 0 119 chr3 67725373 67725719 -150311439 - AluY SINE Alu 0 308 1 635 235 20 13 chr3 67726127 67726280 -150310878 + MER5A DNA MER1_type 30 183 -6 542 332 31 0 chr3 67726900 67727093 -150310065 + MIR SINE MIR 5 203 -59 2427 90 0 0 chr3 67727452 67727753 -150309405 - AluSc SINE Alu -8 301 1 240 35 0 0 chr3 67728156 67728185 -150308973 + (T)n Simple_repeat Simple_repeat 1 29 0 272 290 190 10 chr3 67728637 67728780 -150308378 + MIR SINE MIR 10 167 -61 341 331 191 7 chr3 67729268 67729404 -150307754 - L2 LINE L2 0 3272 3112 690 255 52 13 chr3 67730265 67730496 -150306662 - L1MA9 LINE L1 -38 6274 6035 213 296 171 0 chr3 67730675 67730763 -150306395 + L2 LINE L2 3151 3253 -19 287 278 33 0 chr3 67730881 67730971 -150306187 + MIR SINE MIR 96 188 -74 626 258 51 65 chr3 67731582 67731799 -150305359 - MIR SINE MIR 0 262 49 1009 239 88 58 chr3 67731830 67732328 -150304830 + LTR33 LTR ERVL 1 513 -8 243 356 56 31 chr3 67732374 67732534 -150304624 + L2 LINE L2 2895 3058 -214 1943 216 100 32 chr3 67732797 67733259 -150303899 + MLT2B2 LTR ERVL 3 495 -20 218 144 82 21 chr3 67733260 67733357 -150303801 + (TA)n Simple_repeat Simple_repeat 1 103 0 1417 106 216 13 chr3 67734364 67734600 -150302558 - AluSg1 SINE Alu -25 284 1 1445 169 142 42 chr3 67734637 67734997 -150302161 + MSTD LTR MaLR 1 396 0 1792 256 84 36 chr3 67735890 67736602 -150300556 - L1ME2 LINE L1 -54 6179 5434 22 0 0 0 chr3 67736609 67736631 -150300527 + AT_rich Low_complexity Low_complexity 1 22 0 952 234 21 17 chr3 67736727 67737018 -150300140 - L1ME2 LINE L1 -875 5340 5049 371 237 118 76 chr3 67737013 67737141 -150300017 - L1ME2 LINE L1 -5217 1179 1058 * 1677 180 20 7 chr3 67737141 67737447 -150299711 - AluJb SINE Alu -2 310 1 371 237 118 76 chr3 67737447 67737647 -150299511 - L1ME2 LINE L1 -5338 1058 837 305 245 65 36 chr3 67737659 67737798 -150299360 - L1ME2 LINE L1 -5602 794 652 276 188 25 88 chr3 67739461 67739541 -150297617 - L1MA4 LINE L1 -94 6206 6132 877 173 83 0 chr3 67739541 67739697 -150297461 - FAM SINE Alu -6 169 1 390 292 164 44 chr3 67741210 67741826 -150295332 - L2 LINE L2 0 3313 2632 193 367 100 0 chr3 67741978 67742098 -150295060 - L2 LINE L2 -598 2716 2585 207 88 0 0 chr3 67743280 67743314 -150293844 + (A)n Simple_repeat Simple_repeat 1 34 0 1866 138 0 34 chr3 67743464 67743760 -150293398 + AluSx SINE Alu 3 288 -24 951 200 5 54 chr3 67744000 67744205 -150292953 + MER3 DNA MER1_type 1 195 -14 242 313 39 86 chr3 67744299 67744427 -150292731 + L2 LINE L2 3116 3237 -35 1617 87 171 0 chr3 67745380 67745632 -150291526 - AluSc SINE Alu -4 295 1 2917 6 0 0 chr3 67745640 67745956 -150291202 - AluYb8 SINE Alu -2 316 1 1890 75 12 0 chr3 67746194 67746458 -150290700 - AluY SINE Alu 0 307 41 543 246 67 45 chr3 67748153 67748261 -150288897 - MIR SINE MIR 0 262 147 2172 183 42 2 chr3 67748261 67748671 -150288487 + MSTB LTR MaLR 1 426 0 543 246 67 45 chr3 67748671 67748741 -150288417 - MIR SINE MIR -115 147 80 2217 118 0 19 chr3 67749371 67749714 -150287444 + AluSq SINE Alu 1 307 -6 580 172 192 7 chr3 67750091 67750242 -150286916 - MER3 DNA MER1_type 0 209 31 1025 196 4 52 chr3 67751536 67751765 -150285393 + MER20 DNA MER1_type 2 219 0 2139 111 3 7 chr3 67752162 67752459 -150284699 + AluSc SINE Alu 1 296 -13 183 42 0 0 chr3 67752884 67752908 -150284250 + (CAA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr3 67753011 67753032 -150284126 + AT_rich Low_complexity Low_complexity 1 21 0 1535 217 11 4 chr3 67753772 67754053 -150283105 - AluJb SINE Alu -29 283 1 1844 83 12 0 chr3 67755229 67755493 -150281665 + AluY SINE Alu 41 307 0 1946 128 0 27 chr3 67755731 67756027 -150281131 + AluSx SINE Alu 1 288 -24 636 230 30 0 chr3 67756267 67756432 -150280726 + MER3 DNA MER1_type 1 123 -86 202 213 0 21 chr3 67756717 67756764 -150280394 + (TATG)n Simple_repeat Simple_repeat 3 48 0 1798 119 8 4 chr3 67757120 67757380 -150279778 - AluSc SINE Alu -48 261 1 1025 196 4 52 chr3 67757777 67758006 -150279152 - MER20 DNA MER1_type 0 219 2 213 129 57 29 chr3 67759594 67759664 -150277494 + (TA)n Simple_repeat Simple_repeat 1 72 0 269 194 16 124 chr3 67759692 67759821 -150277337 - MLT2B1 LTR ERVL -20 500 386 1593 138 0 119 chr3 67760367 67760713 -150276445 + AluY SINE Alu 1 308 0 345 282 0 68 chr3 67761370 67761487 -150275671 - MIR SINE MIR -132 130 22 213 285 105 78 chr3 67762110 67762319 -150274839 - MIR SINE MIR -30 232 3 198 71 0 0 chr3 67762332 67762360 -150274798 + (T)n Simple_repeat Simple_repeat 1 28 0 1868 117 0 12 chr3 67762360 67762616 -150274542 - AluSq SINE Alu -60 253 1 197 250 62 0 chr3 67762630 67762694 -150274464 + L2 LINE L2 3139 3206 -66 1849 190 68 17 chr3 67763098 67763508 -150273650 + MSTB1 LTR MaLR 2 432 0 1577 177 21 10 chr3 67763643 67763931 -150273227 + AluJb SINE Alu 1 291 -21 330 324 142 6 chr3 67764099 67764275 -150272883 - MIR SINE MIR -44 218 19 769 259 75 0 chr3 67764454 67764628 -150272530 + MER5A DNA MER1_type 2 188 -1 377 219 49 0 chr3 67765647 67765729 -150271429 + Tigger3b DNA MER2_type 2 87 -1144 2486 127 37 31 chr3 67765762 67766219 -150270939 + Tigger3b DNA MER2_type 274 736 -2292 1840 149 7 26 chr3 67766219 67766561 -150270597 + AluSx SINE Alu 1 312 0 2486 127 37 31 chr3 67766561 67766614 -150270544 + Tigger3b DNA MER2_type 736 787 -444 409 219 0 10 chr3 67766614 67766710 -150270448 - FLAM_A SINE Alu -1 141 47 2205 153 100 2 chr3 67766716 67767135 -150270023 + Tigger3b DNA MER2_type 772 1231 0 7359 142 29 23 chr3 67767373 67768665 -150268493 + HSMAR2 DNA Mariner 3 1302 0 275 237 44 0 chr3 67768699 67768813 -150268345 + (TA)n Simple_repeat Simple_repeat 1 119 0 388 263 167 26 chr3 67768942 67769226 -150267932 + MER102b DNA MER1_type 1 338 -3 722 259 85 22 chr3 67769868 67770092 -150267066 + MIR SINE MIR 15 252 -10 438 294 199 0 chr3 67770594 67770795 -150266363 - MIR SINE MIR -19 243 3 1449 179 31 10 chr3 67771845 67772135 -150265023 + L1MB5 LINE L1 5871 6166 -8 694 284 158 12 chr3 67772552 67772957 -150264201 - LTR16B LTR ERVL 0 464 1 2222 186 23 6 chr3 67772966 67773488 -150263670 + LTR27 LTR ERV1 3 501 0 488 254 41 6 chr3 67776891 67777060 -150260098 + LTR33 LTR ERVL 341 515 -6 305 308 84 0 chr3 67778079 67778186 -150258972 + L2 LINE L2 3189 3304 -9 2329 141 62 24 chr3 67778727 67779264 -150257894 + MER39B LTR ERV1 1 630 -23 1075 150 0 0 chr3 67779296 67779469 -150257689 + MER51A LTR ERV1 128 300 -334 774 99 33 0 chr3 67779465 67779586 -150257572 + MER51A LTR ERV1 510 634 0 * 286 315 99 95 chr3 67779790 67780063 -150257095 + L2 LINE L2 2992 3265 -7 3706 163 2 11 chr3 67780376 67781016 -150256142 + LTR27 LTR ERV1 3 636 0 587 200 40 0 chr3 67781025 67781150 -150256008 + MER20B DNA MER1_type 40 169 -50 332 288 62 20 chr3 67781222 67781368 -150255790 + MIR SINE MIR 108 259 -3 192 40 0 0 chr3 67782005 67782030 -150255128 + (GGGTG)n Simple_repeat Simple_repeat 2 26 0 261 0 0 0 chr3 67782397 67782426 -150254732 + (T)n Simple_repeat Simple_repeat 1 29 0 33 0 0 0 chr3 67782848 67782881 -150254277 + AT_rich Low_complexity Low_complexity 1 33 0 1840 154 0 8 chr3 67782881 67783148 -150254010 - AluSx SINE Alu -47 265 1 183 246 49 16 chr3 67783390 67783451 -150253707 + L2 LINE L2 2660 2722 -592 472 309 58 16 chr3 67784277 67784468 -150252690 + MIR SINE MIR 5 203 -59 672 205 0 8 chr3 67787422 67787539 -150249619 + FLAM_A SINE Alu 4 119 -14 180 243 286 36 chr3 67787921 67788026 -150249132 - MIR SINE MIR -70 192 114 1812 146 42 65 chr3 67788026 67788410 -150248748 + THE1C LTR MaLR 1 375 0 180 243 286 36 chr3 67788410 67788444 -150248714 - MIR SINE MIR -147 115 18 180 125 0 0 chr3 67788650 67788682 -150248476 + (GGGAGA)n Simple_repeat Simple_repeat 6 37 0 210 71 0 0 chr3 67788975 67789003 -150248155 + (TG)n Simple_repeat Simple_repeat 1 28 0 579 277 27 88 chr3 67789148 67789444 -150247714 - L2 LINE L2 0 3313 3036 940 200 17 11 chr3 67789470 67789650 -150247508 - MER5A DNA MER1_type -8 181 1 586 280 39 22 chr3 67790258 67790440 -150246718 - MER5A DNA MER1_type -2 187 3 259 323 153 32 chr3 67790512 67790701 -150246457 - MIR SINE MIR -17 245 34 401 283 46 40 chr3 67791001 67791153 -150246005 + MIR SINE MIR 1 153 -109 266 211 53 18 chr3 67791168 67791282 -150245876 + (TATAA)n Simple_repeat Simple_repeat 5 122 0 320 264 108 85 chr3 67791403 67791678 -150245480 + L1ME LINE L1 5354 5636 -587 1273 203 31 22 chr3 67791710 67792030 -150245128 - MER58B DNA MER1_type -6 335 13 253 260 51 36 chr3 67792039 67792119 -150245039 + L1ME LINE L1 5644 5721 -400 2414 59 0 10 chr3 67792119 67792426 -150244732 + AluY SINE Alu 1 304 -7 253 260 51 36 chr3 67792426 67792503 -150244655 + L1ME LINE L1 5721 5806 -315 248 164 16 0 chr3 67793688 67793749 -150243409 - LTR66 LTR ERVL -171 439 378 207 0 0 0 chr3 67793852 67793875 -150243283 + (T)n Simple_repeat Simple_repeat 1 23 0 265 167 74 0 chr3 67794007 67794061 -150243097 + Alu SINE Alu 234 291 -9 467 291 112 41 chr3 67794367 67794563 -150242595 + MIR SINE MIR 1 210 -52 241 280 97 0 chr3 67795043 67795136 -150242022 + MIR SINE MIR 50 151 -111 500 264 132 7 chr3 67795471 67795766 -150241392 - L1MC4a LINE L1 -1877 5931 5600 224 333 89 15 chr3 67797175 67797310 -150239848 - L2 LINE L2 -666 2648 2504 306 350 32 6 chr3 67798001 67798158 -150239000 + L2 LINE L2 2647 2807 -507 447 248 38 6 chr3 67798164 67798321 -150238837 - MER20B DNA MER1_type -4 779 618 230 289 111 11 chr3 67798507 67798597 -150238561 + MLT1L LTR MaLR 426 524 -91 597 228 112 80 chr3 67799343 67799567 -150237591 - MIR SINE MIR -30 232 2 634 147 46 0 chr3 67800737 67800846 -150236312 + L1PA15 LINE L1 6051 6164 -1 705 267 134 5 chr3 67801363 67801565 -150235593 + MIR SINE MIR 13 240 -22 2130 192 24 117 chr3 67802134 67802846 -150234312 + MLT1E1 LTR MaLR 3 648 -6 228 333 112 53 chr3 67802856 67803286 -150233872 + L2 LINE L2 2063 2517 -797 353 284 87 0 chr3 67803464 67803591 -150233567 + MIR SINE MIR 53 190 -72 276 330 70 0 chr3 67805042 67805142 -150232016 - MIR SINE MIR -56 206 100 2044 156 3 0 chr3 67806228 67806529 -150230629 + AluSx SINE Alu 1 302 -10 24 32 0 0 chr3 67806841 67806872 -150230286 + AT_rich Low_complexity Low_complexity 1 31 0 182 264 111 14 chr3 67806885 67806957 -150230201 - MIR SINE MIR -121 141 63 225 352 88 62 chr3 67807004 67807259 -150229899 + L2 LINE L2 2920 3188 -84 2026 157 3 10 chr3 67807259 67807571 -150229587 - AluJb SINE Alu -2 310 1 225 352 88 62 chr3 67807571 67807656 -150229502 + L2 LINE L2 3188 3269 -3 3376 201 44 26 chr3 67808222 67809387 -150227771 - L1MB1 LINE L1 0 6168 4975 2915 78 2 37 chr3 67810957 67811339 -150225819 - L1PA13 LINE L1 -10 6153 5786 2165 137 0 22 chr3 67811339 67811652 -150225506 - AluSx SINE Alu -6 306 1 2915 78 2 37 chr3 67811652 67811702 -150225456 - L1PA13 LINE L1 -377 5786 5736 372 232 24 0 chr3 67811722 67811804 -150225354 - L2 LINE L2 -9 3304 3221 202 179 0 26 chr3 67811980 67812019 -150225139 - L2 LINE L2 -84 3229 3192 375 320 39 17 chr3 67812815 67812993 -150224165 - MIR SINE MIR -15 247 66 3800 110 32 5 chr3 67813347 67813931 -150223227 + LTR43 LTR ERV1 1 600 -2 358 171 190 57 chr3 67815757 67815915 -150221243 - MIR SINE MIR 0 262 84 195 114 0 0 chr3 67817014 67817049 -150220109 + (TA)n Simple_repeat Simple_repeat 2 36 0 365 278 0 0 chr3 67817049 67817139 -150220019 - L1MC4 LINE L1 -1339 6703 6614 1810 159 0 31 chr3 67817169 67817490 -150219668 - AluJo SINE Alu -1 311 1 11386 38 1 1 chr3 67817675 67819119 -150218039 - L1PA4 LINE L1 -1065 5081 3638 7331 41 1 2 chr3 67819119 67820186 -150216972 + L1PA4 LINE L1 5087 6152 -3 728 289 28 0 chr3 67820448 67820628 -150216530 - MER5A DNA MER1_type -3 186 2 1578 201 11 4 chr3 67821916 67822190 -150214968 + AluJo SINE Alu 8 283 -29 315 0 0 0 chr3 67822194 67822229 -150214929 + (TAA)n Simple_repeat Simple_repeat 2 36 0 595 286 79 18 chr3 67823760 67823987 -150213171 - MIR SINE MIR -20 242 2 209 307 88 20 chr3 67824593 67824713 -150212445 + MIR SINE MIR 55 181 -62 198 0 0 0 chr3 67824759 67824781 -150212377 + (CA)n Simple_repeat Simple_repeat 1 22 0 3103 136 25 58 chr3 67824785 67825061 -150212097 - MER7C DNA MER2_type -2426 602 318 2230 99 7 0 chr3 67825061 67825353 -150211805 + AluSc SINE Alu 6 299 -10 3103 136 25 58 chr3 67825353 67825685 -150211473 - MER7C DNA MER2_type -2710 318 14 248 196 18 0 chr3 67825686 67825742 -150211416 + (TA)n Simple_repeat Simple_repeat 2 58 0 22 35 0 0 chr3 67826473 67826502 -150210656 + AT_rich Low_complexity Low_complexity 1 29 0 233 274 27 27 chr3 67826525 67826598 -150210560 + MER92B LTR ERV1 22 94 -542 277 210 0 0 chr3 67826719 67826781 -150210377 + MER92C LTR ERV1 491 552 -2 367 269 65 54 chr3 67827575 67827761 -150209397 - MIR SINE MIR -7 255 68 316 299 163 14 chr3 67828951 67829098 -150208060 + MIR SINE MIR 86 254 -8 2310 107 0 0 chr3 67829714 67830013 -150207145 - AluY SINE Alu -12 299 1 377 253 68 20 chr3 67830082 67830228 -150206930 - MIR SINE MIR -20 242 90 22 56 0 0 chr3 67830372 67830408 -150206750 + AT_rich Low_complexity Low_complexity 1 36 0 7112 35 3 11 chr3 67832132 67833754 -150203404 + L1PA4 LINE L1 4547 6162 0 1602 194 0 17 chr3 67833934 67834227 -150202931 - AluJo SINE Alu -24 288 1 292 295 39 51 chr3 67834297 67834453 -150202705 + MER5A DNA MER1_type 36 189 0 249 296 104 9 chr3 67834550 67834665 -150202493 + MIR SINE MIR 41 166 -96 225 184 20 0 chr3 67834968 67835017 -150202141 - HsTC2 DNA Tc2 -1813 85 36 231 370 17 34 chr3 67837205 67837324 -150199834 - L2 LINE L2 -12 3260 3144 419 295 179 0 chr3 67837352 67837559 -150199599 - MIR SINE MIR -6 256 13 187 273 7 108 chr3 67838314 67838453 -150198705 - L3 LINE CR1 -614 963 839 416 250 144 44 chr3 67838911 67839071 -150198087 + MIR SINE MIR 86 261 -1 19555 151 39 22 chr3 67839389 67846963 -150190195 - L1MA3 LINE L1 -5 7719 13 769 164 3 0 chr3 67847176 67847329 -150189829 + L1PB4 LINE L1 6011 6165 -1 2304 77 0 3 chr3 67847529 67847816 -150189342 - AluY SINE Alu -13 298 13 2083 126 3 16 chr3 67848797 67849107 -150188051 + AluSx SINE Alu 1 306 -6 2244 101 3 0 chr3 67849788 67850084 -150187074 - AluSp SINE Alu -16 297 1 398 254 43 36 chr3 67850311 67850449 -150186709 - MIR SINE MIR -26 236 98 1349 165 36 0 chr3 67850857 67851105 -150186053 + Tigger4(Zombi) DNA MER2_type 1 257 -2474 241 344 14 8 chr3 67851242 67851385 -150185773 + MIR SINE MIR 16 159 -66 1365 257 115 21 chr3 67851543 67852118 -150185040 - MER92B LTR ERV1 -7 629 1 202 213 0 21 chr3 67852132 67852179 -150184979 + (TATG)n Simple_repeat Simple_repeat 3 48 0 218 222 0 0 chr3 67853186 67853231 -150183927 + (TAA)n Simple_repeat Simple_repeat 2 46 0 380 260 151 41 chr3 67853240 67853459 -150183699 - MIR SINE MIR 0 262 20 219 114 0 0 chr3 67853727 67853762 -150183396 + (ATG)n Simple_repeat Simple_repeat 3 37 0 1301 178 37 19 chr3 67854539 67854754 -150182404 + Tigger3(Golem) DNA MER2_type 1 223 -2806 2050 140 33 30 chr3 67854754 67855090 -150182068 + MER1B DNA MER1_type 1 337 0 1301 178 37 19 chr3 67855090 67855144 -150182014 + Tigger3(Golem) DNA MER2_type 223 275 -2754 1560 166 68 46 chr3 67855144 67855511 -150181647 - THE1C LTR MaLR 0 375 1 4298 112 5 48 chr3 67855519 67856267 -150180891 - THE1C-int LTR MaLR -8 1572 857 22898 117 12 9 chr3 67856276 67860959 -150176199 + L1PA8A LINE L1 1426 6152 -13 206 330 0 11 chr3 67862209 67862297 -150174861 - MIR SINE MIR -1 261 175 183 250 23 0 chr3 67863438 67863482 -150173676 - L2 LINE L2 -17 3255 3211 551 244 234 0 chr3 67865939 67866136 -150171022 - MIR SINE MIR -13 249 7 1945 100 8 4 chr3 67867700 67867959 -150169199 - AluSx SINE Alu -14 298 39 1191 192 31 25 chr3 67869246 67869532 -150167626 - L1MB5 LINE L1 -4 6170 5883 5922 105 14 14 chr3 67869535 67870487 -150166671 - L1MA2 LINE L1 0 6304 5353 452 348 121 14 chr3 67870784 67871386 -150165772 + L1MC/D LINE L1 4487 5179 -967 316 313 65 27 chr3 67871499 67872091 -150165067 + L1MC/D LINE L1 5259 5886 -276 864 185 49 10 chr3 67872265 67872470 -150164688 + MER20 DNA MER1_type 2 214 -5 1235 188 5 9 chr3 67873161 67873384 -150163774 - MER58A DNA MER1_type 0 224 3 22 0 0 0 chr3 67873614 67873636 -150163522 + AT_rich Low_complexity Low_complexity 1 22 0 463 275 118 90 chr3 67874554 67874639 -150162519 + L2 LINE L2 2794 2875 -438 2051 70 44 0 chr3 67874639 67874911 -150162247 - AluY SINE Alu -27 284 1 463 275 118 90 chr3 67874911 67875293 -150161865 + L2 LINE L2 2875 3294 -19 786 207 131 10 chr3 67875346 67875544 -150161614 + MER58A DNA MER1_type 3 224 0 2375 100 0 10 chr3 67875722 67876033 -150161125 + AluSx SINE Alu 1 308 -4 221 213 40 93 chr3 67876148 67876188 -150160970 + L2 LINE L2 3198 3234 -38 454 103 13 26 chr3 67876188 67876266 -150160892 - MADE1 DNA Mariner -3 77 1 221 213 40 93 chr3 67876266 67876300 -150160858 + L2 LINE L2 3234 3268 -4 186 287 20 129 chr3 67876817 67876918 -150160240 + MER5A DNA MER1_type 72 161 -28 250 290 0 0 chr3 67877843 67877905 -150159253 - L2 LINE L2 -1 3312 3251 397 177 31 3 chr3 67877958 67878070 -150159088 + L1MB8 LINE L1 6068 6178 0 426 294 40 8 chr3 67878281 67878407 -150158751 + MIR SINE MIR 12 141 -121 532 268 116 52 chr3 67878787 67879116 -150158042 + L1ME4a LINE L1 5695 6044 -77 2303 69 7 3 chr3 67879391 67879682 -150157476 + AluSc SINE Alu 1 292 -17 22 0 0 0 chr3 67880086 67880108 -150157050 + AT_rich Low_complexity Low_complexity 1 22 0 233 403 14 7 chr3 67880490 67880629 -150156529 + MIR SINE MIR 5 144 -118 190 178 89 22 chr3 67880841 67880886 -150156272 + MIR3 SINE MIR 151 198 -10 523 280 42 63 chr3 67881762 67882048 -150155110 + MLT1I LTR MaLR 21 300 -109 252 286 71 29 chr3 67882022 67882162 -150154996 + MLT1I LTR MaLR 404 549 0 * 568 318 77 66 chr3 67882381 67882720 -150154438 - L2 LINE L2 -189 3083 2749 219 69 0 0 chr3 67882720 67882749 -150154409 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 183 80 0 0 chr3 67882752 67882777 -150154381 + (CAA)n Simple_repeat Simple_repeat 3 27 0 3470 100 2 6 chr3 67882777 67883267 -150153891 - L1PA13 LINE L1 -11 6152 5665 568 318 77 66 chr3 67883267 67883529 -150153629 - L2 LINE L2 -523 2749 2469 298 343 37 8 chr3 67884632 67884766 -150152392 - MIR SINE MIR -124 138 1 220 321 95 0 chr3 67885887 67885971 -150151187 + MIR SINE MIR 44 135 -73 22 0 0 0 chr3 67886021 67886043 -150151115 + AT_rich Low_complexity Low_complexity 1 22 0 235 294 117 25 chr3 67886088 67886251 -150150907 - L2 LINE L2 -15 3298 3121 570 330 112 0 chr3 67886309 67886542 -150150616 + MIR SINE MIR 4 262 0 1013 243 115 51 chr3 67886794 67887425 -150149733 + L1MC4 LINE L1 6499 7149 -659 487 284 70 51 chr3 67887801 67888542 -150148616 + L1MC4a LINE L1 7200 8027 -15 757 70 43 0 chr3 67888841 67888956 -150148202 + L1PA10 LINE L1 5863 5982 -186 1759 177 138 81 chr3 67888956 67889538 -150147620 + LTR1B LTR ERV1 1 615 -211 1094 122 37 16 chr3 67889735 67889923 -150147235 + L1PA10 LINE L1 5977 6168 0 25 0 0 0 chr3 67890827 67890852 -150146306 + AT_rich Low_complexity Low_complexity 1 25 0 619 308 47 8 chr3 67890962 67891196 -150145962 - MIR SINE MIR -18 244 2 617 198 111 1 chr3 67891358 67891708 -150145450 - Charlie1 DNA MER1_type -10 2751 2346 769 264 51 5 chr3 67891762 67891959 -150145199 + MIR SINE MIR 15 220 -42 1919 113 28 11 chr3 67893988 67894270 -150142888 + AluSx SINE Alu 1 287 -25 232 286 24 0 chr3 67894376 67894460 -150142698 + L1ME4a LINE L1 5960 6045 -76 974 158 81 36 chr3 67894648 67894895 -150142263 - Tigger2 DNA MER2_type -10 2708 2451 3173 146 93 1 chr3 67894971 67895617 -150141541 - Tigger2 DNA MER2_type -2013 705 1 2423 66 0 0 chr3 67896519 67896808 -150140350 - AluY SINE Alu -22 289 1 1937 147 3 13 chr3 67897372 67897679 -150139479 - AluSx SINE Alu -8 304 1 2044 127 44 41 chr3 67898129 67898492 -150138666 - THE1B LTR MaLR 0 364 1 1018 268 146 41 chr3 67899343 67899472 -150137686 - L2 LINE L2 -4 3309 3195 423 0 0 0 chr3 67899472 67899519 -150137639 + (CA)n Simple_repeat Simple_repeat 2 48 0 1018 268 146 41 chr3 67899519 67899800 -150137358 - L2 LINE L2 -118 3195 2856 877 236 195 26 chr3 67899809 67900236 -150136922 - MLT1D LTR MaLR -6 620 1 507 232 26 103 chr3 67900236 67900430 -150136728 - L2 LINE L2 -456 2858 2680 1945 166 14 0 chr3 67901095 67901391 -150135767 + AluJb SINE Alu 1 300 -12 320 43 22 0 chr3 67901395 67901441 -150135717 + (CA)n Simple_repeat Simple_repeat 2 48 0 1567 196 21 11 chr3 67903255 67903540 -150133618 - AluJo SINE Alu -21 291 4 33 73 0 0 chr3 67903580 67903648 -150133510 + AT_rich Low_complexity Low_complexity 1 68 0 315 71 0 0 chr3 67903691 67903733 -150133425 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 2773 10 0 0 chr3 67906548 67906850 -150130308 - AluY SINE Alu -9 302 1 2857 6 0 16 chr3 67909414 67909736 -150127422 + AluYb8 SINE Alu 1 317 -1 22 0 0 0 chr3 67909982 67910004 -150127154 + AT_rich Low_complexity Low_complexity 1 22 0 1334 177 0 0 chr3 67910306 67910521 -150126637 + AluSg/x SINE Alu 91 305 -7 27 73 0 0 chr3 67911607 67911662 -150125496 + AT_rich Low_complexity Low_complexity 1 55 0 3670 197 56 55 chr3 67913238 67913409 -150123749 + MER21B LTR ERV1 1 170 -693 8329 47 3 5 chr3 67913409 67915232 -150121926 + L1PA5 LINE L1 4324 6146 -8 3670 197 56 55 chr3 67915232 67915243 -150121915 + MER21B LTR ERV1 170 179 -684 231 61 0 0 chr3 67915243 67915276 -150121882 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 3670 197 56 55 chr3 67915276 67915951 -150121207 + MER21B LTR ERV1 179 860 -3 815 211 12 0 chr3 67916175 67916341 -150120817 + MER5A DNA MER1_type 1 168 -21 459 342 158 22 chr3 67916350 67916672 -150120486 - L3 LINE CR1 -51 1526 1161 577 304 101 27 chr3 67916772 67917108 -150120050 + MLT1K LTR MaLR 116 476 -112 298 251 0 30 chr3 67917658 67917758 -150119400 - L1M4 LINE L1 -609 5575 5479 304 290 55 35 chr3 67918021 67918276 -150118882 - L1M4 LINE L1 -975 5171 4912 678 227 188 0 chr3 67918396 67918572 -150118586 - MER58A DNA MER1_type -15 209 1 239 318 67 59 chr3 67918845 67919025 -150118133 - L1M4 LINE L1 -1717 4429 4252 2016 104 6 68 chr3 67919025 67919351 -150117807 - AluY SINE Alu -3 308 3 239 318 67 59 chr3 67919351 67919853 -150117305 - L1M4 LINE L1 -1894 4252 3741 2226 123 3 0 chr3 67919892 67920194 -150116964 - AluSx SINE Alu -9 303 1 272 321 73 16 chr3 67920575 67921126 -150116032 - L1M4 LINE L1 -2915 3231 2650 246 258 72 10 chr3 67922012 67922109 -150115049 + MIR SINE MIR 56 158 -104 700 95 69 9 chr3 67923302 67923418 -150113740 + MLT2A2 LTR ERVL 76 198 -255 216 0 0 0 chr3 67923427 67923451 -150113707 + (GA)n Simple_repeat Simple_repeat 1 24 0 533 233 170 13 chr3 67923898 67924057 -150113101 + MER5A DNA MER1_type 4 187 -2 199 311 189 0 chr3 67924238 67924312 -150112846 + MIR SINE MIR 84 171 -91 255 235 98 29 chr3 67924597 67924699 -150112459 - MIR SINE MIR 0 262 154 376 320 35 40 chr3 67924720 67924920 -150112238 - L1ME LINE L1 -442 5679 5481 208 195 65 154 chr3 67925375 67925498 -150111660 + L3 LINE CR1 553 664 -913 557 311 130 62 chr3 67926027 67926497 -150110661 - L2 LINE L2 -4 3309 2808 850 214 35 117 chr3 67926630 67926725 -150110433 + AluJb SINE Alu 2 103 -199 240 35 0 0 chr3 67926725 67926754 -150110404 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 850 214 35 117 chr3 67926754 67926975 -150110183 + AluJb SINE Alu 103 292 -10 3045 179 31 8 chr3 67927043 67927696 -150109462 - L1MB7 LINE L1 -21 6163 5496 337 219 8 164 chr3 67927696 67927824 -150109334 - MER5B DNA MER1_type -69 109 2 2527 175 39 4 chr3 67928045 67928558 -150108600 + MER6A DNA MER2_type 71 601 -4 255 113 42 0 chr3 67928648 67928719 -150108439 + (TA)n Simple_repeat Simple_repeat 2 75 0 357 24 0 0 chr3 67928719 67928761 -150108397 + (GA)n Simple_repeat Simple_repeat 2 43 0 2170 109 3 20 chr3 67929004 67929308 -150107850 + AluSq SINE Alu 1 299 -14 21 0 0 0 chr3 67929869 67929890 -150107268 + AT_rich Low_complexity Low_complexity 1 21 0 282 318 188 0 chr3 67931663 67931817 -150105341 - MIR SINE MIR -6 256 74 646 263 73 10 chr3 67932251 67932456 -150104702 - MIR SINE MIR 0 262 45 231 327 146 18 chr3 67933871 67934036 -150103122 - MER117 DNA MER1_type 0 197 12 405 0 0 0 chr3 67936004 67936049 -150101109 + (CA)n Simple_repeat Simple_repeat 2 46 0 213 341 0 34 chr3 67936171 67936259 -150100899 + L2 LINE L2 3229 3313 0 367 137 27 0 chr3 67937098 67937171 -150099987 + GA-rich Low_complexity Low_complexity 2 76 0 331 326 21 0 chr3 67937273 67937368 -150099790 - L2 LINE L2 -18 3254 3158 355 302 148 54 chr3 67937401 67937679 -150099479 - L2 LINE L2 -20 3293 2990 489 220 30 0 chr3 67937818 67937918 -150099240 + MER5A DNA MER1_type 10 112 -77 523 334 81 42 chr3 67938209 67938517 -150098641 - L2 LINE L2 -534 2780 2461 311 203 0 0 chr3 67938528 67938587 -150098571 + Tigger1 DNA MER2_type 1 59 -2359 * 11545 124 48 2 chr3 67938585 67940512 -150096646 + Tigger1 DNA MER2_type 402 2418 0 4246 39 7 0 chr3 67940901 67941465 -150095693 - L1P LINE L1 -2930 3216 2649 13284 32 2 6 chr3 67941465 67943827 -150093331 + L1PA4 LINE L1 3791 6154 -1 357 325 106 0 chr3 67944746 67944869 -150092289 + MIR SINE MIR 2 137 -125 366 23 0 0 chr3 67944930 67944973 -150092185 + (TA)n Simple_repeat Simple_repeat 2 44 0 846 112 0 9 chr3 67944973 67945089 -150092069 - AluSc SINE Alu -14 295 181 606 132 0 97 chr3 67945098 67945242 -150091916 - L1MB8 LINE L1 -10 6168 6039 624 239 7 7 chr3 67945242 67945380 -150091778 + MER5B DNA MER1_type 38 175 -3 186 71 0 0 chr3 67945949 67945977 -150091181 + (A)n Simple_repeat Simple_repeat 1 28 0 2299 101 0 25 chr3 67946267 67946585 -150090573 + AluSx SINE Alu 1 310 -2 213 132 0 0 chr3 67947471 67947509 -150089649 + (CA)n Simple_repeat Simple_repeat 1 38 0 213 178 0 0 chr3 67947745 67947790 -150089368 + (CA)n Simple_repeat Simple_repeat 1 45 0 496 307 57 16 chr3 67948141 67948333 -150088825 - MIR SINE MIR -48 214 15 2190 131 0 0 chr3 67949039 67949337 -150087821 - AluSx SINE Alu -12 300 3 199 262 43 140 chr3 67950055 67950219 -150086939 + L2 LINE L2 3042 3189 -83 309 338 118 17 chr3 67951024 67951311 -150085847 - LTR33 LTR ERVL -84 437 122 355 276 68 57 chr3 67951386 67951578 -150085580 + HAL1 LINE L1 1022 1215 -1292 321 26 0 0 chr3 67952175 67952213 -150084945 + (CA)n Simple_repeat Simple_repeat 1 38 0 2099 113 0 7 chr3 67953390 67953673 -150083485 + AluSc SINE Alu 2 282 -27 288 0 0 0 chr3 67953673 67953705 -150083453 + (CA)n Simple_repeat Simple_repeat 2 33 0 1633 160 58 47 chr3 67954329 67954673 -150082485 - MER7A DNA MER2_type 0 346 1 246 229 0 0 chr3 67954799 67954869 -150082289 + (TA)n Simple_repeat Simple_repeat 2 71 0 191 370 12 12 chr3 67955873 67955954 -150081204 + MIR SINE MIR 27 107 -101 279 279 0 0 chr3 67956049 67956135 -150081023 + MER117 DNA MER1_type 106 191 -6 370 225 261 14 chr3 67956157 67956295 -150080863 - MER5A DNA MER1_type -14 175 4 458 327 115 9 chr3 67956397 67956614 -150080544 - MIR SINE MIR -22 240 1 352 248 116 8 chr3 67956627 67956748 -150080410 - MIR SINE MIR -9 253 120 23 33 0 0 chr3 67956886 67956916 -150080242 + AT_rich Low_complexity Low_complexity 1 30 0 759 186 33 66 chr3 67957290 67957473 -150079685 - MER5B DNA MER1_type 0 178 2 541 335 129 9 chr3 67958001 67958225 -150078933 - MIR SINE MIR 0 262 12 1505 209 3 63 chr3 67958582 67958945 -150078213 - MER58B DNA MER1_type 0 341 1 584 221 46 83 chr3 67959353 67959570 -150077588 - MER63A DNA MER1_type 0 210 2 320 256 0 0 chr3 67961131 67961209 -150075949 + MER103 DNA DNA 68 145 -21 3515 133 0 5 chr3 67961669 67962240 -150074918 + L1PA14 LINE L1 5591 6158 -3 21 0 0 0 chr3 67962264 67962285 -150074873 + AT_rich Low_complexity Low_complexity 1 21 0 2925 105 7 11 chr3 67962320 67962759 -150074399 + L1PA8 LINE L1 5731 6167 -5 536 298 71 13 chr3 67962948 67963173 -150073985 - MIR SINE MIR -1 261 24 189 250 19 19 chr3 67963641 67963745 -150073413 + GA-rich Low_complexity Low_complexity 3 106 0 268 311 76 0 chr3 67963755 67963874 -150073284 + MER5A DNA MER1_type 36 163 -26 962 186 0 18 chr3 67963874 67964041 -150073117 - AluJb SINE Alu -10 302 139 804 304 90 22 chr3 67964583 67965027 -150072131 - L1MC4a LINE L1 -1873 5935 5462 21 71 0 0 chr3 67965349 67965391 -150071767 + AT_rich Low_complexity Low_complexity 1 42 0 227 322 182 45 chr3 67965930 67966194 -150070964 - L2 LINE L2 0 3272 2973 244 109 59 20 chr3 67967386 67967487 -150069671 + (TA)n Simple_repeat Simple_repeat 2 106 0 651 311 99 11 chr3 67967625 67967998 -150069160 - MLT1J LTR MaLR -44 467 62 1095 200 54 57 chr3 67969537 67969974 -150067184 + MER89 LTR ERV1 1 536 -23 213 278 19 0 chr3 67970105 67970159 -150066999 + L2 LINE L2 1502 1556 -1758 255 219 0 0 chr3 67970697 67970761 -150066397 + L1MC4 LINE L1 6640 6703 -1339 247 281 0 0 chr3 67970715 67970804 -150066354 - L1MC4 LINE L1 -1339 6703 6615 * 260 222 14 0 chr3 67970818 67970890 -150066268 + (TATG)n Simple_repeat Simple_repeat 2 74 0 1333 184 106 4 chr3 67970895 67971151 -150066007 - AluJo SINE Alu -30 282 1 269 312 54 21 chr3 67971868 67971961 -150065197 + L2 LINE L2 3146 3241 -31 220 328 0 31 chr3 67974505 67974569 -150062589 - MIR SINE MIR -80 128 67 913 184 60 60 chr3 67975068 67975285 -150061873 - MER20 DNA MER1_type 0 219 3 416 290 24 65 chr3 67976100 67976269 -150060889 - MER91A DNA MER1_type -34 162 1 571 266 112 12 chr3 67976498 67976667 -150060491 - MER5A DNA MER1_type 0 189 4 3356 228 55 37 chr3 67977279 67977928 -150059230 + HAL1b LINE L1 117 800 -548 1703 205 51 11 chr3 67977928 67978279 -150058879 + MLT1A1 LTR MaLR 1 365 0 3356 228 55 37 chr3 67978279 67978837 -150058321 + HAL1b LINE L1 800 1346 -2 321 293 20 10 chr3 67979101 67979200 -150057958 - MIR SINE MIR -3 259 160 296 282 0 0 chr3 67979226 67979297 -150057861 - MIR SINE MIR 0 262 192 349 193 0 118 chr3 67980059 67980178 -150056980 - MIR SINE MIR -71 191 87 186 329 39 106 chr3 67980837 67981044 -150056114 - L2 LINE L2 -50 3222 3030 2135 125 3 3 chr3 67981478 67981774 -150055384 - AluSx SINE Alu -16 296 1 265 248 30 75 chr3 67982059 67982192 -150054966 + LTR67 LTR ERVL 425 551 -6 465 298 111 17 chr3 67982192 67982373 -150054785 - L3 LINE CR1 -114 1463 1266 335 143 0 29 chr3 67982995 67983065 -150054093 + (CATATA)n Simple_repeat Simple_repeat 4 71 0 268 236 28 0 chr3 67983386 67983458 -150053700 + CT-rich Low_complexity Low_complexity 2 75 0 305 253 67 28 chr3 67984084 67984262 -150052896 - MER113 DNA MER1_type? -293 228 44 2227 119 0 3 chr3 67984545 67984856 -150052302 - AluSg SINE Alu 0 310 1 449 276 83 26 chr3 67986090 67986282 -150050876 + MIR SINE MIR 9 211 -51 281 300 12 12 chr3 67986381 67986461 -150050697 - L2 LINE L2 0 3313 3234 1056 65 0 0 chr3 67986597 67986735 -150050423 - MER85 DNA T2_type -1 138 1 194 339 143 9 chr3 67987437 67987549 -150049609 + MIR3 SINE MIR 70 196 -12 463 310 16 11 chr3 67987998 67988185 -150048973 - MER117 DNA MER1_type -9 188 1 231 295 19 45 chr3 67988784 67988940 -150048218 + CT-rich Low_complexity Low_complexity 2 153 0 1756 138 46 14 chr3 67989561 67989843 -150047315 + AluSq SINE Alu 1 291 -22 2279 88 0 0 chr3 67990050 67990335 -150046823 - AluSc SINE Alu -2 307 23 332 391 14 7 chr3 67990843 67990981 -150046177 - L2 LINE L2 0 3272 3134 303 205 51 0 chr3 67991065 67991143 -150046015 + MLT2E LTR ERVL 39 120 -508 24 0 0 0 chr3 67991654 67991678 -150045480 + AT_rich Low_complexity Low_complexity 1 24 0 1042 233 42 9 chr3 67991692 67992027 -150045131 + L1MC2 LINE L1 4264 4609 -1537 369 121 212 0 chr3 67993034 67993100 -150044058 + MADE1 DNA Mariner 1 80 0 1405 112 18 0 chr3 67993574 67993797 -150043361 - L1PA11 LINE L1 -77 6097 5871 1453 207 62 57 chr3 67993830 67994318 -150042840 + MLT1D LTR MaLR 1 490 -15 4578 195 43 21 chr3 67994553 67996204 -150040954 + L1MC2 LINE L1 4596 6343 -1 1934 155 0 7 chr3 67996363 67996666 -150040492 - AluSg SINE Alu -9 301 1 185 328 0 0 chr3 67996859 67996923 -150040235 + L2 LINE L2 3236 3299 -14 695 147 16 16 chr3 67996973 67997102 -150040056 + FRAM SINE Alu 32 160 -16 378 301 37 37 chr3 67997254 67997390 -150039768 - MIR SINE MIR -109 153 18 286 299 0 26 chr3 67998284 67998361 -150038797 + L2 LINE L2 3221 3295 -18 341 365 22 7 chr3 67998565 67998703 -150038455 - MIR SINE MIR -46 162 22 5560 209 75 26 chr3 67999929 68000110 -150037048 - L1MB8 LINE L1 -263 6726 6555 1914 160 7 0 chr3 68000110 68000424 -150036734 - AluJb SINE Alu 0 316 1 5560 209 75 26 chr3 68000424 68002726 -150034432 - L1MB8 LINE L1 -434 6555 4046 2022 103 0 64 chr3 68002726 68003037 -150034121 - AluSg SINE Alu -19 291 1 5560 209 75 26 chr3 68003037 68003624 -150033534 - L1MB8 LINE L1 -2943 4046 3489 4098 225 70 21 chr3 68003632 68004713 -150032445 - L1MB8 LINE L1 -5723 1136 3 282 220 0 0 chr3 68004725 68004784 -150032374 + MLT1I LTR MaLR 343 401 -8 357 239 0 97 chr3 68005071 68005184 -150031974 + L2 LINE L2 3206 3307 -6 189 0 0 0 chr3 68006150 68006171 -150030987 + (A)n Simple_repeat Simple_repeat 1 21 0 582 329 84 9 chr3 68008417 68008642 -150028516 + MIR SINE MIR 13 254 -8 305 210 29 45 chr3 68009217 68009369 -150027789 + MIR SINE MIR 1 145 -63 780 170 33 7 chr3 68010096 68010249 -150026909 - FAM SINE Alu -18 157 1 261 247 84 36 chr3 68010569 68010735 -150026423 + L2 LINE L2 1908 2081 -1233 214 291 73 10 chr3 68010703 68010847 -150026311 + L2 LINE L2 3094 3302 -11 * 326 281 115 0 chr3 68010855 68010951 -150026207 - MIR SINE MIR -106 156 50 350 214 225 60 chr3 68011015 68011197 -150025961 - MER58C DNA MER1_type -3 212 1 2260 94 0 24 chr3 68011288 68011586 -150025572 - AluSc SINE Alu -18 291 1 302 392 69 0 chr3 68012567 68012669 -150024489 + L2 LINE L2 3162 3270 -2 255 258 0 0 chr3 68012848 68012906 -150024252 - MIR SINE MIR -43 165 107 979 263 41 56 chr3 68013021 68013616 -150023542 + L1MC4 LINE L1 6719 7225 -736 544 249 40 35 chr3 68013691 68013864 -150023294 + MER5B DNA MER1_type 1 174 -4 325 294 15 122 chr3 68014118 68014461 -150022697 + L1MEc LINE L1 15 320 -6076 1422 246 72 14 chr3 68015011 68015514 -150021644 + L1ME1 LINE L1 5629 6160 -6 389 257 80 43 chr3 68015550 68015826 -150021332 + L1ME3A LINE L1 5883 6168 -2 276 293 129 8 chr3 68015946 68016118 -150021040 + L1MC5 LINE L1 7610 7826 -135 2292 129 0 0 chr3 68016118 68016427 -150020731 + AluSq SINE Alu 1 309 -4 276 293 129 8 chr3 68016427 68016517 -150020641 + L1MC5 LINE L1 7826 7904 -57 601 280 101 59 chr3 68016996 68017453 -150019705 - LTR33 LTR ERVL -1 520 45 627 296 56 72 chr3 68017936 68018368 -150018790 + L2 LINE L2 2848 3272 0 1133 178 12 4 chr3 68018480 68018733 -150018425 + L1 LINE L1 4497 4751 -1395 189 197 239 42 chr3 68022174 68022245 -150014913 - L3 LINE CR1 -450 1127 1043 283 285 122 24 chr3 68022628 68022751 -150014407 - MIR3 SINE MIR -64 144 10 408 262 110 68 chr3 68024242 68024343 -150012815 + L1MC4a LINE L1 5605 5700 -421 2316 74 0 16 chr3 68024343 68024652 -150012506 + AluY SINE Alu 1 304 -7 408 262 110 68 chr3 68024652 68024859 -150012299 + L1MC4a LINE L1 5700 5926 -195 331 286 65 24 chr3 68024864 68025032 -150012126 + L1ME4a LINE L1 5947 6121 0 188 236 109 0 chr3 68025562 68025617 -150011541 - MIR3 SINE MIR -35 173 113 456 231 110 18 chr3 68026216 68026489 -150010669 - L1ME4a LINE L1 -222 6159 5862 26 0 0 0 chr3 68026610 68026636 -150010522 + AT_rich Low_complexity Low_complexity 1 26 0 32 67 0 0 chr3 68026768 68026828 -150010330 + AT_rich Low_complexity Low_complexity 1 60 0 1896 119 7 48 chr3 68027542 68027679 -150009479 + AluSq SINE Alu 1 142 -185 2338 74 30 0 chr3 68027679 68027976 -150009182 + AluY SINE Alu 1 306 -5 1896 119 7 48 chr3 68027976 68028177 -150008981 + AluSq SINE Alu 142 327 0 546 286 75 48 chr3 68028251 68028834 -150008324 + HAL1 LINE L1 770 1368 -1139 623 240 196 46 chr3 68028849 68029077 -150008081 + HAL1 LINE L1 1427 1619 -888 2490 138 36 24 chr3 68029077 68029498 -150007660 + MSTB LTR MaLR 1 426 0 623 240 196 46 chr3 68029498 68029682 -150007476 + HAL1 LINE L1 1619 1901 -606 331 230 61 85 chr3 68030038 68030203 -150006955 + HAL1b LINE L1 751 911 -437 297 241 85 65 chr3 68030343 68030542 -150006616 + HAL1 LINE L1 2300 2502 -5 777 206 17 84 chr3 68032818 68033056 -150004102 + MER31B LTR ERV1 1 222 -244 305 154 0 0 chr3 68033087 68033139 -150004019 - L1ME4a LINE L1 -716 5786 5735 2044 130 35 3 chr3 68033144 68033514 -150003644 - L1MB3 LINE L1 -2 6181 5800 11640 144 39 30 chr3 68033514 68035858 -150001300 - L1M4c LINE L1 -4017 2367 3 1029 153 11 80 chr3 68035844 68036271 -150000887 - L1ME4a LINE L1 -753 5749 5351 * 5818 162 10 6 chr3 68036299 68038036 -149999122 - L1PB1 LINE L1 -1 6150 4405 3552 235 111 64 chr3 68038033 68038395 -149998763 - L1ME4a LINE L1 -1048 5358 5015 * 468 0 0 0 chr3 68038395 68038447 -149998711 + (TA)n Simple_repeat Simple_repeat 2 53 0 3552 235 111 64 chr3 68038447 68038709 -149998449 - L1ME4a LINE L1 -1391 5015 4767 1951 97 67 4 chr3 68038709 68039004 -149998154 - AluSq SINE Alu 0 312 1 3552 235 111 64 chr3 68039004 68040344 -149996814 - L1ME4a LINE L1 -1639 4767 3298 3472 219 89 8 chr3 68040347 68041953 -149995205 - L1MDa LINE L1 -3239 3167 1428 993 190 0 22 chr3 68041957 68042136 -149995022 - AluJb SINE Alu -15 297 123 1777 172 22 47 chr3 68042136 68042456 -149994702 - AluJb SINE Alu 0 312 1 3857 241 20 48 chr3 68042490 68043666 -149993492 - L1MDa LINE L1 -4987 1422 280 180 0 0 0 chr3 68043666 68043686 -149993472 + (A)n Simple_repeat Simple_repeat 1 20 0 1022 222 21 33 chr3 68043739 68043840 -149993318 - L1MDa LINE L1 -6168 241 140 2359 64 0 14 chr3 68043840 68044136 -149993022 - AluY SINE Alu -5 306 15 1022 222 21 33 chr3 68044136 68044277 -149992881 - L1MDa LINE L1 -6269 140 2 183 186 0 0 chr3 68044775 68044818 -149992340 + (CA)n Simple_repeat Simple_repeat 2 44 0 186 43 0 0 chr3 68046636 68046659 -149990499 + (CA)n Simple_repeat Simple_repeat 2 24 0 2047 125 0 36 chr3 68046943 68047247 -149989911 + AluSq SINE Alu 1 293 -20 2080 267 99 45 chr3 68047276 68047489 -149989669 - L1MEc LINE L1 -3873 2523 2323 3502 60 0 7 chr3 68047489 68047940 -149989218 - LTR7 LTR ERV1 -2 448 1 2080 267 99 45 chr3 68047940 68048162 -149988996 - L1MEc LINE L1 -4073 2323 2115 393 22 0 0 chr3 68048162 68048208 -149988950 + (TG)n Simple_repeat Simple_repeat 1 46 0 2080 267 99 45 chr3 68048208 68048622 -149988536 - L1MEc LINE L1 -4281 2115 1725 2464 94 0 22 chr3 68048622 68048985 -149988173 + L1PA10 LINE L1 5803 6157 -11 2080 267 99 45 chr3 68048985 68049771 -149987387 - L1MEc LINE L1 -4671 1725 796 408 363 16 12 chr3 68050210 68050532 -149986626 - L1MEc LINE L1 -6029 367 45 253 300 0 0 chr3 68051776 68051846 -149985312 - L2 LINE L2 -65 3248 3179 1730 174 0 7 chr3 68052152 68052474 -149984684 - AluJb SINE Alu 0 312 1 1871 162 68 3 chr3 68052476 68052827 -149984331 - L1PB4 LINE L1 -1 6155 5782 314 275 0 33 chr3 68052873 68052964 -149984194 + L1MC4 LINE L1 6615 6702 -1340 1720 224 37 11 chr3 68053003 68053467 -149983691 - L1ME LINE L1 -2532 3850 3375 257 235 35 12 chr3 68054339 68054424 -149982734 - MIR SINE MIR 0 262 176 551 276 229 31 chr3 68054620 68055044 -149982114 - L1ME4a LINE L1 -6 6115 5608 397 322 54 34 chr3 68055384 68055738 -149981420 - L1ME4a LINE L1 -537 5625 5265 14676 126 31 8 chr3 68056342 68057276 -149979882 + Tigger1 DNA MER2_type 1 912 -1506 2144 117 0 3 chr3 68057276 68057574 -149979584 - AluSg SINE Alu -13 297 1 14676 126 31 8 chr3 68057574 68059002 -149978156 + Tigger1 DNA MER2_type 912 2418 0 189 74 0 0 chr3 68059239 68059266 -149977892 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 354 190 130 10 chr3 68059271 68059371 -149977787 - MIR SINE MIR -56 206 95 678 252 94 29 chr3 68059383 68059716 -149977442 - MLT1D LTR MaLR -8 459 1 2965 144 48 10 chr3 68060142 68060664 -149976494 + MER34 LTR ERV1 1 542 0 823 263 137 63 chr3 68060983 68061662 -149975496 - L1ME LINE L1 -4220 2162 1295 483 127 13 0 chr3 68061662 68061741 -149975417 - MADE1 DNA Mariner 0 80 1 823 263 137 63 chr3 68061741 68061934 -149975224 - L1ME LINE L1 -5087 1295 1118 * 1059 259 52 45 chr3 68061915 68062297 -149974861 - L1ME LINE L1 -5620 752 368 848 320 72 54 chr3 68062566 68063403 -149973755 - L1 LINE L1 -3092 3054 2203 336 282 90 32 chr3 68063477 68063633 -149973525 - MIR SINE MIR -51 211 47 2132 138 0 0 chr3 68063724 68064036 -149973122 - AluSq SINE Alu -1 312 1 1732 130 124 16 chr3 68064183 68064249 -149972909 - MER2 DNA MER2_type -3 342 284 2153 112 21 53 chr3 68064249 68064625 -149972533 + THE1B LTR MaLR 1 364 0 1732 130 124 16 chr3 68064625 68064865 -149972293 - MER2 DNA MER2_type -61 284 3 310 264 28 75 chr3 68066116 68066222 -149970936 - MER5A DNA MER1_type 0 189 89 347 281 109 92 chr3 68066267 68066616 -149970542 - HAL1b LINE L1 -941 407 53 1682 177 26 3 chr3 68066666 68066971 -149970187 - AluJb SINE Alu 0 312 1 1813 210 56 50 chr3 68067580 68068080 -149969078 + MLT1D LTR MaLR 3 505 0 200 83 0 28 chr3 68069598 68069634 -149967524 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 6162 40 3 0 chr3 68069637 68070380 -149966778 + L1PA5 LINE L1 5410 6154 0 2090 134 0 3 chr3 68070418 68070723 -149966435 + AluSx SINE Alu 1 304 -8 598 266 94 26 chr3 68070753 68070986 -149966172 + MIR SINE MIR 5 253 -9 832 224 102 10 chr3 68071009 68071214 -149965944 + MIR SINE MIR 8 231 -31 351 65 0 0 chr3 68071412 68071458 -149965700 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 25 31 0 0 chr3 68072445 68072477 -149964681 + AT_rich Low_complexity Low_complexity 1 32 0 336 301 50 60 chr3 68072546 68072745 -149964413 + L1ME3A LINE L1 5959 6155 -15 499 121 0 40 chr3 68072785 68072884 -149964274 + MER53 DNA DNA 92 186 -3 22 0 0 0 chr3 68072918 68072940 -149964218 + AT_rich Low_complexity Low_complexity 1 22 0 236 225 155 16 chr3 68074122 68074251 -149962907 - L1ME4a LINE L1 -3 6118 5972 505 250 82 24 chr3 68074443 68074651 -149962507 - L1ME4a LINE L1 -344 5777 5558 906 26 0 11 chr3 68074902 68075019 -149962139 + L1HS LINE L1 6050 6173 -1 327 49 0 0 chr3 68075061 68075102 -149962056 + (CA)n Simple_repeat Simple_repeat 2 42 0 1944 105 56 11 chr3 68075171 68075456 -149961702 + AluSx SINE Alu 2 299 -13 330 296 99 45 chr3 68075706 68076212 -149960946 - L1MC/D LINE L1 -625 5539 5315 1827 146 0 26 chr3 68076433 68076587 -149960571 - AluJb SINE Alu -12 300 156 4062 123 9 68 chr3 68076587 68077320 -149959838 - LTR8 LTR ERV1 0 691 2 1827 146 0 26 chr3 68077320 68077473 -149959685 - AluJb SINE Alu -156 156 1 239 279 144 28 chr3 68077785 68078215 -149958943 - L1MC/D LINE L1 -1712 4434 3955 1293 245 24 63 chr3 68078314 68078727 -149958431 + MLT1C LTR MaLR 69 465 -2 25 0 0 0 chr3 68079290 68079315 -149957843 + AT_rich Low_complexity Low_complexity 1 25 0 223 233 156 0 chr3 68080569 68080659 -149956499 - MIR3 SINE MIR -4 204 101 2434 53 22 3 chr3 68081405 68081724 -149955434 + L1PA8 LINE L1 5845 6169 -3 484 296 33 20 chr3 68083010 68083162 -149953996 + L1MC/D LINE L1 5439 5592 -2216 418 321 37 11 chr3 68083204 68083457 -149953701 - L1ME4a LINE L1 -272 5849 5592 5151 204 70 22 chr3 68084342 68085595 -149951563 - Charlie1a DNA MER1_type 0 1455 143 40779 44 1 3 chr3 68085595 68090635 -149946523 + L1PA3 LINE L1 5 5031 -1115 3699 44 0 2 chr3 68090640 68091093 -149946065 + L1PA3 LINE L1 5703 6154 -1 700 243 7 0 chr3 68091103 68091247 -149945911 - Charlie1a DNA MER1_type -1302 153 9 1937 114 39 11 chr3 68091278 68091559 -149945599 + AluSx SINE Alu 1 289 -23 210 37 0 0 chr3 68091562 68091589 -149945569 + (CA)n Simple_repeat Simple_repeat 2 28 0 3770 137 40 6 chr3 68091596 68092248 -149944910 - Tigger3b DNA MER2_type -557 674 1 2671 119 47 62 chr3 68092248 68092778 -149944380 + L1MA9 LINE L1 5786 6307 -5 203 333 0 0 chr3 68092783 68092843 -149944315 + MER5A DNA MER1_type 63 122 -67 290 293 147 17 chr3 68092989 68093105 -149944053 - MER5A DNA MER1_type 0 189 59 212 348 121 28 chr3 68093011 68093152 -149944006 + MER5A DNA MER1_type 35 188 -1 * 533 262 28 7 chr3 68094060 68094205 -149942953 + MER103 DNA DNA 3 150 -16 454 269 10 0 chr3 68094876 68094980 -149942178 + MER5A DNA MER1_type 5 109 -80 498 340 52 27 chr3 68095168 68095632 -149941526 + L2 LINE L2 2573 3060 -212 275 242 0 15 chr3 68095632 68095698 -149941460 + L2 LINE L2 3207 3271 -1 * 371 292 9 9 chr3 68095691 68095804 -149941354 + MIR SINE MIR 138 250 -12 685 218 24 24 chr3 68095858 68096023 -149941135 + MER5B DNA MER1_type 2 166 -12 1226 180 14 0 chr3 68097792 68098003 -149939155 - MER20 DNA MER1_type 0 219 6 2011 121 10 35 chr3 68098017 68098330 -149938828 - AluSx SINE Alu -7 305 1 2607 172 41 32 chr3 68098557 68099114 -149938044 + MER68 LTR ERV1 1 562 0 4676 163 26 22 chr3 68099280 68099957 -149937201 - L1MB8 LINE L1 0 6178 5493 2078 119 27 0 chr3 68099957 68100252 -149936906 - AluSx SINE Alu -5 307 5 4676 163 26 22 chr3 68100252 68100841 -149936317 - L1MB8 LINE L1 -685 5493 4908 538 268 26 105 chr3 68101062 68101290 -149935868 - MIR SINE MIR 0 262 53 408 244 98 43 chr3 68101961 68102125 -149935033 - MIR SINE MIR 0 262 90 2351 79 0 3 chr3 68103029 68103334 -149933824 + AluY SINE Alu 1 304 -7 335 306 129 6 chr3 68103442 68103612 -149933546 - L3 LINE CR1 -1031 546 356 180 158 0 0 chr3 68103862 68103900 -149933258 + T-rich Low_complexity Low_complexity 2 39 0 339 25 0 0 chr3 68104001 68104041 -149933117 + (CA)n Simple_repeat Simple_repeat 1 40 0 28 0 0 0 chr3 68105059 68105087 -149932071 + AT_rich Low_complexity Low_complexity 1 28 0 2040 127 0 40 chr3 68106144 68106467 -149930691 + AluSg SINE Alu 1 310 0 4076 154 34 19 chr3 68106529 68107229 -149929929 - MER50 LTR ERV1 -23 711 1 2302 91 19 10 chr3 68107991 68108299 -149928859 - AluSx SINE Alu -1 311 1 461 271 94 6 chr3 68108477 68108647 -149928511 - MER102b DNA MER1_type -50 291 107 261 0 0 0 chr3 68108746 68108775 -149928383 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 469 345 0 7 chr3 68109422 68109561 -149927597 - MER117 DNA MER1_type 0 197 60 1120 197 144 19 chr3 68109715 68109979 -149927179 - AluJo SINE Alu -5 297 1 1268 291 67 47 chr3 68110561 68111132 -149926026 + MLT1K LTR MaLR 3 584 -4 4042 176 40 16 chr3 68111293 68112122 -149925036 + L1MB7 LINE L1 5319 6167 -17 206 286 18 0 chr3 68113922 68113978 -149923180 + MIR SINE MIR 44 100 -108 1078 195 37 23 chr3 68114058 68114076 -149923082 - MER20 DNA MER1_type 0 219 203 4943 145 64 4 chr3 68114076 68114855 -149922303 + LTR1B LTR ERV1 1 826 0 1078 195 37 23 chr3 68114855 68115051 -149922107 - MER20 DNA MER1_type -16 203 2 738 291 45 5 chr3 68115553 68115773 -149921385 + MIR SINE MIR 8 236 -26 893 169 25 6 chr3 68115841 68116001 -149921157 - L1MB3 LINE L1 -2 6181 6019 334 308 101 40 chr3 68116886 68117084 -149920074 + L2 LINE L2 2863 3072 -200 369 279 45 45 chr3 68117184 68117338 -149919820 + MER5B DNA MER1_type 1 154 -24 328 255 189 33 chr3 68117365 68117518 -149919640 + MIR SINE MIR 63 239 -23 250 350 128 13 chr3 68118392 68118618 -149918540 + MIR SINE MIR 2 253 -9 354 350 0 10 chr3 68118689 68118789 -149918369 - L2 LINE L2 -25 3247 3149 450 214 32 24 chr3 68118802 68118928 -149918230 + Charlie8 DNA MER1_type 33 159 -2258 324 133 0 0 chr3 68119561 68119621 -149917537 + (A)n Simple_repeat Simple_repeat 1 60 0 377 348 9 9 chr3 68120163 68120278 -149916880 - L2 LINE L2 -3 3269 3155 935 118 15 0 chr3 68120279 68120415 -149916743 + BC200 scRNA scRNA 1 138 -62 406 316 122 63 chr3 68120531 68121034 -149916124 - L2 LINE L2 -245 3068 2522 529 301 92 86 chr3 68122345 68122810 -149914348 + L2 LINE L2 2804 3271 -1 21 0 0 0 chr3 68122908 68122929 -149914229 + AT_rich Low_complexity Low_complexity 1 21 0 364 266 116 1 chr3 68123057 68123182 -149913976 - MIR SINE MIR -62 146 48 347 239 168 36 chr3 68123533 68123698 -149913460 - MER34 LTR ERV1 0 542 356 1433 147 72 69 chr3 68123698 68123843 -149913315 + MER2 DNA MER2_type 1 144 -201 2155 117 3 0 chr3 68123843 68124143 -149913015 + AluSx SINE Alu 1 301 -11 1433 147 72 69 chr3 68124143 68124316 -149912842 + MER2 DNA MER2_type 144 320 -25 308 365 85 30 chr3 68124760 68125196 -149911962 - L2 LINE L2 -748 2566 2107 246 318 147 8 chr3 68125288 68125417 -149911741 - MIR SINE MIR -90 172 26 2463 180 40 30 chr3 68125573 68125675 -149911483 + LTR53 LTR ERVL 1 100 -419 2476 141 5 19 chr3 68125675 68126044 -149911114 + THE1B LTR MaLR 1 364 0 2463 180 40 30 chr3 68126044 68126436 -149910722 + LTR53 LTR ERVL 100 500 -19 214 288 36 58 chr3 68126468 68126607 -149910551 - MIR SINE MIR -20 242 107 1098 293 82 16 chr3 68126723 68127330 -149909828 + L1ME4a LINE L1 5256 5902 -219 1239 110 0 0 chr3 68129794 68129957 -149907201 + AluSp SINE Alu 133 295 -18 664 266 23 0 chr3 68130587 68130764 -149906394 - Charlie8 DNA MER1_type -2141 276 96 207 257 40 54 chr3 68131100 68131174 -149905984 + L2 LINE L2 3150 3222 -50 390 307 40 13 chr3 68131993 68132143 -149905015 - MIR SINE MIR -62 200 47 181 87 22 43 chr3 68132315 68132361 -149904797 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 348 319 126 44 chr3 68132553 68133191 -149903967 - L2 LINE L2 -1 3312 2625 857 268 105 60 chr3 68133216 68133713 -149903445 + LTR33 LTR ERVL 3 521 0 1142 283 117 9 chr3 68133998 68134587 -149902571 - L2 LINE L2 -1 3312 2649 1617 224 137 36 chr3 68134588 68135200 -149901958 - L2 LINE L2 -907 2407 1734 554 162 11 49 chr3 68135215 68135400 -149901758 + CT-rich Low_complexity Low_complexity 2 179 0 647 295 184 5 chr3 68135444 68135813 -149901345 - L2 LINE L2 -1625 1689 1255 258 267 99 46 chr3 68137717 68137848 -149899310 + MLT1J LTR MaLR 238 375 -136 2051 165 67 44 chr3 68137899 68138304 -149898854 + MLT2D LTR ERVL 1 414 0 248 253 121 30 chr3 68138376 68138475 -149898683 + MIR SINE MIR 70 177 -85 536 215 231 26 chr3 68138735 68138930 -149898228 - MIR SINE MIR -3 259 25 571 253 10 56 chr3 68139239 68139437 -149897721 - MIR SINE MIR -44 218 30 183 80 0 0 chr3 68139561 68139586 -149897572 + (CA)n Simple_repeat Simple_repeat 1 25 0 283 222 43 8 chr3 68140035 68140152 -149897006 + (TA)n Simple_repeat Simple_repeat 2 122 0 2173 179 60 86 chr3 68140935 68141504 -149895654 + MLT2B3 LTR ERVL 1 554 0 351 306 47 0 chr3 68142100 68142185 -149894973 - L2 LINE L2 -36 3236 3148 410 346 43 28 chr3 68142625 68142879 -149894279 - MIR SINE MIR 0 262 5 661 322 25 21 chr3 68143058 68143558 -149893600 + ERVL LTR ERVL 3323 3848 -1806 255 269 103 64 chr3 68143726 68143882 -149893276 + ERVL LTR ERVL 4073 4234 -1420 1493 311 77 45 chr3 68144200 68144786 -149892372 + ERVL LTR ERVL 4323 4946 -818 3111 104 28 2 chr3 68144786 68145209 -149891949 - MER57B LTR ERV1 0 434 1 1493 311 77 45 chr3 68145209 68145465 -149891693 + ERVL LTR ERVL 4946 5192 -572 323 336 99 57 chr3 68145654 68145865 -149891293 + LTR67 LTR ERVL 23 242 -315 565 245 54 38 chr3 68146047 68146231 -149890927 + LTR67 LTR ERVL 364 550 -7 369 0 0 0 chr3 68147628 68147669 -149889489 + (TA)n Simple_repeat Simple_repeat 2 42 0 3576 176 73 16 chr3 68147773 68148461 -149888697 + LTR8A LTR ERV1 1 727 0 2741 188 62 28 chr3 68149488 68149619 -149887539 - MER44D DNA MER2_type -1883 604 479 2199 116 3 0 chr3 68149619 68149913 -149887245 - AluSq SINE Alu -18 295 1 2741 188 62 28 chr3 68149913 68150312 -149886846 - MER44D DNA MER2_type -2008 479 1 1794 148 80 22 chr3 68150612 68150936 -149886222 + MER61A LTR ERV1 1 343 0 1721 163 11 36 chr3 68150936 68151501 -149885657 + MER61A-int LTR ERV1 1 700 -4517 18761 79 14 9 chr3 68151538 68152442 -149884716 + MER61A-int LTR ERV1 1320 2218 -2999 6119 58 24 5 chr3 68152442 68153194 -149883964 - MER4E LTR ERV1 0 766 1 18761 79 14 9 chr3 68153194 68156065 -149881093 + MER61A-int LTR ERV1 2218 5217 0 1738 144 74 21 chr3 68156065 68156391 -149880767 + MER61A LTR ERV1 1 343 0 197 250 0 0 chr3 68156895 68156939 -149880219 + MIR SINE MIR 99 142 -66 1474 121 12 88 chr3 68157124 68157141 -149880017 - L1MA9 LINE L1 -250 6062 6045 566 158 65 0 chr3 68157141 68157280 -149879878 - L1MA9 LINE L1 0 6312 6165 1474 121 12 88 chr3 68157280 68157592 -149879566 - L1MA9 LINE L1 -267 6045 5758 623 149 35 0 chr3 68157587 68157701 -149879457 + L1M2 LINE L1 5445 5562 -750 * 1446 166 12 72 chr3 68157962 68158293 -149878865 - MLT1A1 LTR MaLR 0 365 55 1123 156 47 28 chr3 68158296 68158508 -149878650 - AluJb SINE Alu -10 302 87 276 114 0 129 chr3 68158510 68158580 -149878578 - MLT1A1 LTR MaLR -304 61 1 216 304 54 33 chr3 68159131 68159223 -149877935 + MIR3 SINE MIR 13 106 -102 448 287 33 13 chr3 68159382 68159532 -149877626 + LTR33 LTR ERVL 6 158 -363 1985 161 3 0 chr3 68159650 68159949 -149877209 - AluSx SINE Alu -12 300 1 1837 150 75 23 chr3 68160004 68160350 -149876808 + MLT1A1 LTR MaLR 2 365 0 351 0 0 0 chr3 68161210 68161249 -149875909 + (CA)n Simple_repeat Simple_repeat 2 40 0 341 318 0 9 chr3 68161450 68161557 -149875601 + MIR SINE MIR 41 146 -116 559 297 76 5 chr3 68161764 68161949 -149875209 + MIR SINE MIR 51 248 -14 22 0 0 0 chr3 68161950 68161972 -149875186 + AT_rich Low_complexity Low_complexity 1 22 0 276 238 12 38 chr3 68162029 68162109 -149875049 + L2 LINE L2 3181 3258 -14 185 0 40 0 chr3 68162109 68162134 -149875024 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 316 294 10 10 chr3 68162239 68162341 -149874817 + GA-rich Low_complexity Low_complexity 2 103 0 22 56 0 0 chr3 68162490 68162526 -149874632 + AT_rich Low_complexity Low_complexity 1 36 0 338 304 81 62 chr3 68162638 68162911 -149874247 + L2 LINE L2 3005 3282 -31 1780 249 31 18 chr3 68162944 68163458 -149873700 - MER82 DNA MER2_type -11 642 122 988 157 7 13 chr3 68163467 68163620 -149873538 + FRAM SINE Alu 9 160 -16 617 213 8 0 chr3 68163620 68163747 -149873411 - MER82 DNA MER2_type -524 129 2 208 231 26 0 chr3 68163747 68163825 -149873333 + (TA)n Simple_repeat Simple_repeat 2 81 0 23 0 0 0 chr3 68164154 68164177 -149872981 + AT_rich Low_complexity Low_complexity 1 23 0 279 203 0 0 chr3 68164415 68164489 -149872669 + (TA)n Simple_repeat Simple_repeat 2 75 0 296 24 24 0 chr3 68164489 68164530 -149872628 + (GA)n Simple_repeat Simple_repeat 2 43 0 2041 115 4 4 chr3 68164551 68164849 -149872309 + AluSc SINE Alu 1 298 0 1279 187 48 24 chr3 68165975 68166307 -149870851 + L1MC2 LINE L1 6004 6343 -1 202 223 181 53 chr3 68168273 68168367 -149868791 + L3 LINE CR1 1403 1508 -69 2112 140 0 3 chr3 68168606 68168914 -149868244 - AluSx SINE Alu -3 309 3 239 304 0 11 chr3 68168927 68169019 -149868139 - LTR16A1 LTR ERVL -56 401 311 414 0 0 0 chr3 68169687 68169733 -149867425 + (TGGA)n Simple_repeat Simple_repeat 4 49 0 298 237 32 11 chr3 68169734 68169827 -149867331 + HsTC2 DNA Tc2 1 95 -1803 326 311 48 12 chr3 68170378 68170545 -149866613 - L1MC4a LINE L1 -1880 5928 5756 1996 137 0 35 chr3 68170805 68171119 -149866039 - AluJb SINE Alu 0 312 10 2738 79 3 0 chr3 68171203 68171557 -149865601 - THE1A LTR MaLR 0 355 1 310 272 63 56 chr3 68171619 68171898 -149865260 - L1M4 LINE L1 -2995 3151 2867 1787 141 4 0 chr3 68171898 68172160 -149864998 - AluSx SINE Alu -14 298 36 310 272 63 56 chr3 68172160 68172274 -149864884 - L1M4 LINE L1 -3279 2867 2755 2106 219 89 52 chr3 68172438 68172769 -149864389 + Zaphod DNA AcHobo 95 412 -3619 270 0 0 0 chr3 68172769 68172799 -149864359 + (TAG)n Simple_repeat Simple_repeat 2 31 0 2106 219 89 52 chr3 68172799 68173329 -149863829 + Zaphod DNA AcHobo 412 988 -3043 362 132 0 0 chr3 68173329 68173382 -149863776 - MER58 DNA MER1_type 0 2420 2368 287 256 0 39 chr3 68173380 68173458 -149863700 - MER58 DNA MER1_type -2150 270 196 * 1273 217 67 24 chr3 68173502 68173921 -149863237 + Zaphod DNA AcHobo 3595 4031 0 226 214 71 0 chr3 68173922 68173978 -149863180 - L2 LINE L2 -67 3246 3187 187 328 0 0 chr3 68173986 68174050 -149863108 + L2 LINE L2 2561 2624 -690 1437 124 0 0 chr3 68174050 68174251 -149862907 - AluSg/x SINE Alu -11 301 101 255 170 0 75 chr3 68174251 68174304 -149862854 - Alu SINE Alu -259 49 1 589 334 89 47 chr3 68174304 68174480 -149862678 + L2 LINE L2 2616 2783 -530 2269 91 3 0 chr3 68174480 68174767 -149862391 - AluSp SINE Alu -25 288 1 589 334 89 47 chr3 68174767 68175265 -149861893 + L2 LINE L2 2783 3313 0 368 302 27 83 chr3 68175762 68175866 -149861292 - LTR16C LTR ERVL -23 468 360 1192 230 83 62 chr3 68175866 68176314 -149860844 - LTR16A1 LTR ERVL 0 457 1 368 302 27 83 chr3 68176314 68176547 -149860611 - LTR16C LTR ERVL -131 360 150 225 0 0 0 chr3 68178297 68178322 -149858836 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 775 261 92 0 chr3 68179695 68179890 -149857268 + MIR SINE MIR 19 231 -31 219 340 63 44 chr3 68179949 68180155 -149857003 + L2 LINE L2 2852 3061 -211 222 274 0 0 chr3 68180277 68180328 -149856830 + L2 LINE L2 3263 3313 0 1603 137 41 115 chr3 68180528 68180831 -149856327 - MLT1B LTR MaLR -4 386 121 2386 83 0 13 chr3 68180831 68181144 -149856014 - AluY SINE Alu -2 309 1 1603 137 41 115 chr3 68181144 68181257 -149855901 - MLT1B LTR MaLR -269 121 1 228 352 55 47 chr3 68181949 68182077 -149855081 + L2 LINE L2 3133 3261 -11 1365 183 4 58 chr3 68182619 68182893 -149854265 + AluJb SINE Alu 44 302 -10 279 298 58 44 chr3 68183017 68183222 -149853936 - L2 LINE L2 -75 3238 3031 1405 165 70 13 chr3 68183785 68184224 -149852934 - LTR54 LTR ERV1 -1 509 1 526 246 33 0 chr3 68184880 68185002 -149852156 - MER5A DNA MER1_type -6 183 58 311 183 269 0 chr3 68185134 68185238 -149851920 - MER5B DNA MER1_type -7 171 40 395 321 38 8 chr3 68186224 68186355 -149850803 + MIR SINE MIR 20 154 -108 193 256 0 0 chr3 68186621 68186660 -149850498 - L3 LINE CR1 -7 1570 1532 183 313 90 0 chr3 68186868 68186935 -149850223 - MIR SINE MIR -100 108 36 232 339 80 9 chr3 68187081 68187193 -149849965 + MIR SINE MIR 117 236 -26 1612 164 68 4 chr3 68187461 68187742 -149849416 - AluSq SINE Alu -14 299 1 349 315 21 52 chr3 68188071 68188248 -149848910 + MIR SINE MIR 12 185 -77 1657 201 27 54 chr3 68188248 68188655 -149848503 + MSTD LTR MaLR 1 396 0 349 315 21 52 chr3 68188655 68188676 -149848482 + MIR SINE MIR 185 205 -57 796 253 36 0 chr3 68189057 68189358 -149847800 - L1ME LINE L1 -3681 2399 2088 7345 212 22 11 chr3 68189484 68192128 -149845030 - L1PA16 LINE L1 -2 6164 3536 2235 250 76 43 chr3 68192138 68193779 -149843379 - L1ME LINE L1 -3967 2113 431 409 246 32 0 chr3 68193839 68193965 -149843193 - L1ME LINE L1 -3681 2399 2270 1125 233 20 88 chr3 68193967 68194410 -149842748 - L1ME LINE L1 -5652 418 6 474 296 68 6 chr3 68194891 68195067 -149842091 - MIR SINE MIR -12 250 64 2041 138 7 0 chr3 68195298 68195588 -149841570 + AluSx SINE Alu 1 292 -20 189 0 0 0 chr3 68196239 68196260 -149840898 + (TTA)n Simple_repeat Simple_repeat 3 23 0 2087 108 8 0 chr3 68196263 68196531 -149840627 - AluSx SINE Alu -22 290 21 264 330 78 26 chr3 68197464 68197579 -149839579 - MIR3 SINE MIR -79 129 9 324 271 104 83 chr3 68197825 68198017 -149839141 + MIR SINE MIR 46 241 -21 1515 254 85 16 chr3 68198339 68198553 -149838605 - L2 LINE L2 -2 3311 3113 1921 158 50 76 chr3 68198553 68199029 -149838129 + MLT1C LTR MaLR 4 467 0 1515 254 85 16 chr3 68199029 68199594 -149837564 - L2 LINE L2 -200 3113 2487 351 260 95 37 chr3 68199735 68199865 -149837293 + L1MC4a LINE L1 5257 5378 -786 2399 125 5 19 chr3 68199865 68200233 -149836925 + THE1B LTR MaLR 1 363 -1 351 260 95 37 chr3 68200233 68200344 -149836814 + L1MC4a LINE L1 5378 5512 -652 300 352 50 17 chr3 68200529 68200708 -149836450 + L1MC4a LINE L1 5717 5901 -1907 2246 121 3 18 chr3 68200746 68201086 -149836072 + MER1B DNA MER1_type 3 337 0 653 96 0 10 chr3 68201392 68201496 -149835662 + (GGAA)n Simple_repeat Simple_repeat 3 105 0 1625 80 5 0 chr3 68201561 68201795 -149835363 - AluSp SINE Alu 0 317 83 486 267 75 32 chr3 68203258 68203445 -149833713 + MIR SINE MIR 49 243 -19 246 297 20 14 chr3 68203448 68203596 -149833562 + (TTA)n Simple_repeat Simple_repeat 2 150 0 255 221 39 26 chr3 68203657 68203734 -149833424 - L2 LINE L2 -1 3312 3235 2027 127 3 0 chr3 68203838 68204144 -149833014 + AluSq SINE Alu 1 307 0 275 352 33 0 chr3 68204349 68204440 -149832718 - L2 LINE L2 -8 3264 3171 201 351 45 27 chr3 68204835 68204946 -149832212 + L2 LINE L2 3200 3312 -1 3350 126 38 6 chr3 68205010 68205536 -149831622 + MER34C LTR ERV1 43 585 0 425 286 223 15 chr3 68206865 68207071 -149830087 - MIR SINE MIR -1 261 13 185 236 246 27 chr3 68207193 68207303 -149829855 + MIR SINE MIR 81 214 -48 329 290 48 24 chr3 68207320 68207444 -149829714 - MIR SINE MIR 0 262 136 492 228 24 24 chr3 68207488 68207611 -149829547 - MIR SINE MIR -104 158 36 806 168 87 27 chr3 68208020 68208235 -149828923 - MER33 DNA MER1_type -97 227 1 844 252 107 60 chr3 68208238 68208670 -149828488 - HAL1 LINE L1 -1778 729 278 4886 166 58 25 chr3 68208805 68209818 -149827340 - L1MD1 LINE L1 0 6636 5593 1809 145 16 35 chr3 68209818 68210136 -149827022 + AluSx SINE Alu 1 312 0 4886 166 58 25 chr3 68210136 68210307 -149826851 - L1MD1 LINE L1 -1043 5593 5429 2179 222 38 48 chr3 68210309 68210848 -149826310 - L1MD1 LINE L1 -1323 5217 4685 1251 206 13 48 chr3 68210848 68211159 -149825999 - AluJo SINE Alu -12 300 1 2179 222 38 48 chr3 68211159 68211350 -149825808 - L1MD1 LINE L1 -1855 4685 4494 1746 267 32 2 chr3 68211347 68211883 -149825275 - L1MD1 LINE L1 -2312 4228 3677 * 1501 138 79 0 chr3 68211896 68212150 -149825008 - LTR38B LTR ERV1 -13 597 324 308 194 10 61 chr3 68212156 68212254 -149824904 - L1MD1 LINE L1 -4596 1944 1852 2024 114 13 3 chr3 68212275 68212583 -149824575 - LTR38B LTR ERV1 -299 311 1 362 149 64 32 chr3 68212583 68212677 -149824481 - L1MEc LINE L1 -2859 3681 3585 * 2399 181 74 20 chr3 68212662 68213347 -149823811 - L1MEc LINE L1 -3812 2728 2003 336 209 0 30 chr3 68213348 68213415 -149823743 - AluJ/FRAM SINE Alu -6 296 232 2102 78 7 3 chr3 68213435 68213758 -149823400 + AluSx SINE Alu 1 324 0 495 177 10 13 chr3 68213758 68213882 -149823276 - L1MEc LINE L1 -4575 2004 1869 315 0 0 0 chr3 68217846 68217881 -149819277 + (TA)n Simple_repeat Simple_repeat 2 36 0 243 0 0 0 chr3 68217881 68217908 -149819250 + (T)n Simple_repeat Simple_repeat 1 27 0 203 265 20 0 chr3 68218377 68218426 -149818732 - MER5B DNA MER1_type -126 52 3 21 0 0 0 chr3 68219755 68219776 -149817382 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 68220492 68220513 -149816645 + AT_rich Low_complexity Low_complexity 1 21 0 192 111 0 0 chr3 68220573 68220609 -149816549 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 28 29 0 0 chr3 68220794 68220829 -149816329 + AT_rich Low_complexity Low_complexity 1 35 0 2296 113 0 0 chr3 68222075 68222376 -149814782 - AluSx SINE Alu -11 301 1 200 184 20 0 chr3 68222936 68222985 -149814173 + CT-rich Low_complexity Low_complexity 3 52 0 755 275 52 22 chr3 68223804 68224033 -149813125 + MIR SINE MIR 27 262 0 219 192 39 0 chr3 68224448 68224500 -149812658 + GA-rich Low_complexity Low_complexity 2 55 0 207 0 0 0 chr3 68224694 68224717 -149812441 + (TA)n Simple_repeat Simple_repeat 2 24 0 272 283 133 18 chr3 68224895 68225008 -149812150 + MIR SINE MIR 30 155 -107 298 204 0 0 chr3 68225410 68225464 -149811694 + L2 LINE L2 3017 3070 -243 396 0 0 0 chr3 68225576 68225620 -149811538 + (TC)n Simple_repeat Simple_repeat 1 44 0 538 276 65 48 chr3 68225622 68225916 -149811242 + L2 LINE L2 2990 3288 -25 1726 209 75 48 chr3 68227195 68227698 -149809460 + MLT2B1 LTR ERVL 4 520 0 21 0 0 0 chr3 68227888 68227909 -149809249 + AT_rich Low_complexity Low_complexity 1 21 0 580 198 0 10 chr3 68227998 68228099 -149809059 + FLAM_C SINE Alu 23 122 -21 454 284 32 96 chr3 68229721 68230066 -149807092 - MLT1J LTR MaLR -78 433 111 259 281 67 11 chr3 68230083 68230172 -149806986 - MLT1L LTR MaLR -521 94 1 1134 242 161 46 chr3 68230395 68230915 -149806243 + MLT1L LTR MaLR 36 615 0 969 230 14 14 chr3 68231645 68231862 -149805296 - U3 snRNA snRNA 0 217 1 273 365 41 19 chr3 68231862 68232133 -149805025 + L2 LINE L2 2687 2963 -351 798 272 30 13 chr3 68232613 68232845 -149804313 + MIR SINE MIR 17 252 -10 1642 164 12 0 chr3 68232907 68233163 -149803995 + AluJo SINE Alu 3 261 -51 328 293 12 0 chr3 68233334 68233416 -149803742 + L2 LINE L2 3223 3305 -8 319 287 49 41 chr3 68234424 68234546 -149802612 + MIR SINE MIR 3 125 -137 628 244 134 34 chr3 68234685 68234947 -149802211 + MLT1J2 LTR MaLR 43 330 -120 198 0 0 0 chr3 68234980 68235002 -149802156 + (T)n Simple_repeat Simple_repeat 1 22 0 2153 119 3 0 chr3 68235019 68235312 -149801846 + AluSx SINE Alu 2 295 -17 313 74 0 91 chr3 68235313 68235434 -149801724 + (TA)n Simple_repeat Simple_repeat 2 111 0 226 200 22 0 chr3 68235589 68235634 -149801524 + MER75 DNA T2_type 469 514 0 306 350 41 0 chr3 68235664 68235761 -149801397 + MIR SINE MIR 34 134 -74 2228 83 0 21 chr3 68236423 68236711 -149800447 + AluSx SINE Alu 1 282 -30 401 69 0 0 chr3 68236711 68236769 -149800389 + AluJo SINE Alu 244 301 -8 435 79 158 0 chr3 68237090 68237166 -149799992 - Tigger3(Golem) DNA MER2_type -170 2859 2772 * 864 189 0 44 chr3 68237145 68237304 -149799854 - Tigger3(Golem) DNA MER2_type -451 2578 1 430 255 20 20 chr3 68237304 68237453 -149799705 - L1ME LINE L1 -320 5801 5653 397 285 288 13 chr3 68240188 68240217 -149796941 + L2 LINE L2 324 344 -2970 806 206 35 5 chr3 68240217 68240416 -149796742 - MER3 DNA MER1_type 0 209 5 397 285 288 13 chr3 68240416 68240768 -149796390 + L2 LINE L2 344 810 -2504 389 292 8 0 chr3 68240822 68240932 -149796226 + MER20B DNA MER1_type 88 202 -17 1606 268 128 25 chr3 68240968 68241577 -149795581 + L2 LINE L2 850 1521 -1793 1649 144 8 4 chr3 68241592 68241849 -149795309 + AluSx SINE Alu 41 298 -14 1007 317 106 28 chr3 68241849 68242387 -149794771 + L2 LINE L2 2741 3310 -3 571 256 60 67 chr3 68243717 68244181 -149792977 + L1M4 LINE L1 2225 2685 -3461 289 247 60 87 chr3 68244337 68244774 -149792384 + L1M4 LINE L1 2938 3362 -2784 195 364 34 0 chr3 68244928 68245016 -149792142 - L2 LINE L2 0 3272 3182 1306 126 25 5 chr3 68245047 68245245 -149791913 + AluSg/x SINE Alu 86 287 -25 271 305 32 78 chr3 68245313 68245467 -149791691 - L2 LINE L2 -194 3078 2932 223 187 28 140 chr3 68245934 68246012 -149791146 + MER5C DNA MER1_type 30 94 -230 1472 160 45 13 chr3 68246012 68246324 -149790834 + MER33 DNA MER1_type 3 324 0 223 187 28 140 chr3 68246324 68246352 -149790806 + MER5C DNA MER1_type 94 124 -200 338 250 20 30 chr3 68246373 68246473 -149790685 + MER5C DNA MER1_type 226 324 0 535 228 81 7 chr3 68247802 68247938 -149789220 - MER58B DNA MER1_type -3 338 193 255 301 0 0 chr3 68247938 68248021 -149789137 + L1ME LINE L1 5610 5692 -429 2340 110 0 0 chr3 68249384 68249694 -149787464 + AluSg SINE Alu 1 310 0 297 270 226 9 chr3 68251269 68251384 -149785774 - L2 LINE L2 0 3272 3133 295 302 252 31 chr3 68251557 68251779 -149785379 - L3 LINE CR1 0 1577 1307 229 337 33 11 chr3 68251862 68251954 -149785204 + L2 LINE L2 3137 3230 -42 221 298 0 79 chr3 68252213 68252327 -149784831 - L2 LINE L2 -211 3061 2957 437 284 99 43 chr3 68252498 68252709 -149784449 + MIR SINE MIR 14 236 -26 189 107 0 0 chr3 68252940 68252968 -149784190 + (T)n Simple_repeat Simple_repeat 1 28 0 1249 188 43 3 chr3 68253692 68253996 -149783162 + MER33 DNA MER1_type 1 316 -8 377 286 55 28 chr3 68254023 68254205 -149782953 - L1ME4a LINE L1 -178 5943 5757 771 274 116 59 chr3 68254443 68254900 -149782258 - LTR33 LTR ERVL -16 505 23 410 264 157 0 chr3 68254947 68255087 -149782071 + MIR SINE MIR 60 221 -41 16459 34 3 1 chr3 68255873 68258642 -149778516 - L1PA4 LINE L1 -3 6152 3378 968 183 0 6 chr3 68258669 68258862 -149778296 - AluJb SINE Alu 0 311 120 9647 81 30 22 chr3 68258913 68260288 -149776870 - SVA Other Other 0 1386 1 25267 59 2 1 chr3 68260292 68263673 -149773485 - L1P LINE L1 -2758 3388 2 629 311 20 32 chr3 68263762 68264010 -149773148 - MIR SINE MIR -12 250 6 256 329 38 0 chr3 68265924 68266003 -149771155 + L2 LINE L2 3188 3269 -3 209 270 79 34 chr3 68266147 68266236 -149770922 + L2 LINE L2 3221 3313 0 293 325 114 47 chr3 68266432 68266749 -149770409 + L2 LINE L2 2715 3059 -213 540 272 110 6 chr3 68267016 68267189 -149769969 - MIR SINE MIR -26 236 46 2334 92 0 3 chr3 68267200 68267495 -149769663 - AluSc SINE Alu -15 294 1 254 286 34 8 chr3 68268384 68268503 -149768655 + MER113 DNA MER1_type? 312 433 -88 2189 128 46 8 chr3 68268959 68269310 -149767848 - THE1B LTR MaLR 0 364 1 648 298 109 33 chr3 68269378 68270009 -149767149 - L2 LINE L2 -94 3219 2519 720 262 32 24 chr3 68270875 68271127 -149766031 + L1ME LINE L1 5539 5792 -329 505 10 0 127 chr3 68273259 68273574 -149763584 + (TA)n Simple_repeat Simple_repeat 1 274 0 1278 128 43 19 chr3 68273668 68273879 -149763279 - MER20 DNA MER1_type 0 219 4 1029 60 52 0 chr3 68274154 68274288 -149762870 + AluY SINE Alu 158 298 -13 326 272 98 22 chr3 68274377 68274469 -149762689 - L2 LINE L2 -12 3301 3203 1768 156 46 13 chr3 68274495 68274797 -149762361 - AluJo SINE Alu 0 312 1 1241 227 82 93 chr3 68274848 68274896 -149762262 + MLT1E2 LTR MaLR 1 48 -578 2277 106 0 7 chr3 68274896 68275197 -149761961 + AluSx SINE Alu 1 299 -13 1241 227 82 93 chr3 68275197 68275795 -149761363 + MLT1E2 LTR MaLR 48 624 -2 286 344 50 31 chr3 68275943 68276103 -149761055 - L2 LINE L2 -1 3271 3109 632 294 16 26 chr3 68276206 68276237 -149760921 - MIR SINE MIR -70 192 162 2468 113 19 14 chr3 68276237 68276599 -149760559 - THE1B LTR MaLR 0 364 1 632 294 16 26 chr3 68276599 68276761 -149760397 - MIR SINE MIR -100 162 1 207 91 0 68 chr3 68277337 68277381 -149759777 + (TAAAA)n Simple_repeat Simple_repeat 4 44 0 864 223 36 0 chr3 68277560 68277753 -149759405 - MER3 DNA MER1_type 0 209 10 1288 203 146 38 chr3 68278548 68279020 -149758138 + MLT1F LTR MaLR 24 563 -4 641 281 51 58 chr3 68279955 68280268 -149756890 + MLT1I LTR MaLR 99 409 0 1716 211 0 16 chr3 68283964 68284145 -149753013 - AluJb SINE Alu -13 299 123 225 0 0 0 chr3 68284145 68284170 -149752988 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1716 211 0 16 chr3 68284170 68284292 -149752866 - AluJb SINE Alu -189 123 1 225 160 20 40 chr3 68284765 68284815 -149752343 + CT-rich Low_complexity Low_complexity 5 53 0 327 85 0 0 chr3 68285451 68285498 -149751660 + (GA)n Simple_repeat Simple_repeat 2 48 0 503 264 101 22 chr3 68286410 68286588 -149750570 + MIR SINE MIR 70 261 -1 408 323 87 36 chr3 68287149 68287390 -149749768 + MIR SINE MIR 3 252 -10 774 269 5 11 chr3 68287984 68288188 -149748970 - MIR SINE MIR -13 249 49 369 0 0 0 chr3 68288253 68288294 -149748864 + (TG)n Simple_repeat Simple_repeat 2 42 0 7885 207 28 43 chr3 68289046 68290820 -149746338 + L1MA4 LINE L1 1 1747 -5421 6142 29 5 0 chr3 68290824 68291583 -149745575 - L1PA4 LINE L1 -1 6154 5392 14070 191 32 25 chr3 68291599 68292781 -149744377 + L1MA4 LINE L1 1758 2930 -4391 2103 126 7 0 chr3 68292781 68293095 -149744063 + AluSp SINE Alu 1 316 0 14070 191 32 25 chr3 68293095 68296982 -149740176 + L1MA4 LINE L1 2930 6916 -405 1382 198 101 21 chr3 68296982 68297270 -149739888 + AluJb SINE Alu 1 311 -1 14070 191 32 25 chr3 68297270 68297678 -149739480 + L1MA4 LINE L1 6916 7319 -2 610 349 111 23 chr3 68297817 68298393 -149738765 + L2 LINE L2 2684 3313 0 2344 92 0 3 chr3 68299693 68299998 -149737160 + AluSq SINE Alu 1 304 -9 424 379 16 11 chr3 68300254 68300436 -149736722 - MIR3 SINE MIR -7 201 19 641 109 55 0 chr3 68301108 68301253 -149735905 - L1MD2 LINE L1 -9 6350 6168 1564 212 97 39 chr3 68301253 68301771 -149735387 + LTR10A LTR ERV1 1 548 -61 182 208 21 42 chr3 68301820 68301868 -149735290 - MIR SINE MIR -2 260 214 315 261 34 8 chr3 68302402 68302521 -149734637 + MLT1H1 LTR MaLR 62 183 -372 243 0 0 0 chr3 68302552 68302579 -149734579 + (A)n Simple_repeat Simple_repeat 1 27 0 712 247 35 22 chr3 68302638 68302869 -149734289 + MLT1H1 LTR MaLR 322 555 0 452 312 28 32 chr3 68303533 68304011 -149733147 + MLT1K LTR MaLR 11 568 -20 240 249 109 24 chr3 68305016 68305181 -149731977 + L1ME LINE L1 5721 5899 -222 445 238 0 0 chr3 68305326 68305431 -149731727 + MER34 LTR ERV1 1 105 -437 * 694 231 78 56 chr3 68305426 68305789 -149731369 + MER34 LTR ERV1 321 534 -8 205 27 81 0 chr3 68306997 68307034 -149730124 + A-rich Low_complexity Low_complexity 1 40 0 277 248 28 18 chr3 68307050 68307159 -149729999 - L1MC4 LINE L1 -8 8034 7925 1848 244 56 31 chr3 68307276 68307952 -149729206 - L1MC4 LINE L1 -246 7796 7104 760 92 8 8 chr3 68307955 68308075 -149729083 + (TTTC)n Simple_repeat Simple_repeat 2 121 0 2496 227 86 57 chr3 68308113 68308250 -149728908 - L1MC4a LINE L1 -934 6874 6742 1896 113 74 40 chr3 68308250 68308576 -149728582 + MER1B DNA MER1_type 1 337 0 2496 227 86 57 chr3 68308576 68309526 -149727632 - L1MC4a LINE L1 -1066 6742 5755 362 199 58 51 chr3 68309559 68309715 -149727443 - L1MC4a LINE L1 -2398 5410 5254 335 320 98 19 chr3 68310458 68310774 -149726384 - L1ME4a LINE L1 -210 5911 5571 291 230 97 67 chr3 68312543 68312610 -149724548 + MER96B DNA MER1_type? 1 65 -352 1005 179 17 6 chr3 68312610 68312783 -149724375 + FAM SINE Alu 1 175 0 291 230 97 67 chr3 68312783 68312880 -149724278 + MER96B DNA MER1_type? 65 170 -247 * 359 145 194 16 chr3 68312788 68312912 -149724246 - MER96B DNA MER1_type? -66 351 206 32 0 0 0 chr3 68312931 68312963 -149724195 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr3 68313011 68313054 -149724104 + AT_rich Low_complexity Low_complexity 1 43 0 1543 135 0 0 chr3 68313109 68313324 -149723834 - AluSg/x SINE Alu -13 297 83 23 68 0 0 chr3 68313437 68313481 -149723677 + AT_rich Low_complexity Low_complexity 1 44 0 610 180 70 12 chr3 68313482 68313654 -149723504 + MER96B DNA MER1_type? 191 372 -45 37036 70 3 4 chr3 68313935 68319870 -149717288 + L1PA5 LINE L1 228 6151 -3 305 96 19 0 chr3 68319877 68319929 -149717229 - L1P5 LINE L1 -681 5475 5423 310 302 23 23 chr3 68320347 68320476 -149716682 - L1ME4a LINE L1 0 6121 5993 186 43 0 0 chr3 68320476 68320499 -149716659 + (A)n Simple_repeat Simple_repeat 1 23 0 339 299 174 48 chr3 68320502 68320853 -149716305 + L2 LINE L2 2841 3235 -37 299 245 102 31 chr3 68321014 68321112 -149716046 - MIR SINE MIR -121 141 37 291 213 64 11 chr3 68321167 68321261 -149715897 - MER103 DNA DNA -25 141 43 24 0 0 0 chr3 68322322 68322346 -149714812 + AT_rich Low_complexity Low_complexity 1 24 0 2406 90 0 3 chr3 68322758 68323069 -149714089 + AluSg SINE Alu 1 310 0 255 254 15 0 chr3 68323575 68323642 -149713516 + Charlie8 DNA MER1_type 1360 1427 -990 444 118 0 0 chr3 68324641 68324709 -149712449 + (TA)n Simple_repeat Simple_repeat 2 69 0 314 259 61 14 chr3 68324977 68325124 -149712034 - L1ME4a LINE L1 -262 5904 5751 319 309 25 12 chr3 68325357 68325519 -149711639 + MER117 DNA MER1_type 33 196 -1 268 368 13 0 chr3 68326986 68327062 -149710096 - L2 LINE L2 -93 3179 3103 1925 208 68 37 chr3 68327233 68327748 -149709410 - MER34 LTR ERV1 0 542 12 2167 100 7 0 chr3 68328134 68328413 -149708745 - AluSq SINE Alu -32 281 1 385 265 66 48 chr3 68328739 68329011 -149708147 - L1MC4 LINE L1 -566 7476 7200 326 216 0 0 chr3 68329227 68329301 -149707857 - L1ME3A LINE L1 -12 6158 6085 2844 237 88 74 chr3 68329317 68330808 -149706350 - L1MC4a LINE L1 -881 6927 5416 469 231 16 0 chr3 68330797 68330918 -149706240 - L1MC3 LINE L1 0 7785 7663 * 446 219 8 0 chr3 68330935 68331054 -149706104 - L1MC4a LINE L1 -2369 5439 5320 2301 94 0 3 chr3 68331074 68331372 -149705786 - AluSg1 SINE Alu -12 297 1 493 280 33 62 chr3 68331385 68331654 -149705504 - L1MC4a LINE L1 -874 5272 5011 224 315 147 0 chr3 68332561 68332745 -149704413 + MIR SINE MIR 39 249 -13 731 305 127 17 chr3 68333196 68333613 -149703545 - MLT1K LTR MaLR -47 541 79 1632 189 63 8 chr3 68333642 68334023 -149703135 + L1ME1 LINE L1 5760 6161 -5 733 307 66 0 chr3 68334886 68335127 -149702031 - MIR SINE MIR -4 258 2 278 333 56 9 chr3 68335937 68336045 -149701113 - L2 LINE L2 -2 3270 3158 2313 101 0 0 chr3 68336191 68336489 -149700669 + AluSg SINE Alu 1 298 -12 330 237 167 32 chr3 68337458 68337505 -149699653 + MER69A DNA AcHobo 1 40 -2486 2445 74 0 3 chr3 68337505 68337814 -149699344 - AluY SINE Alu -3 308 1 330 237 167 32 chr3 68337814 68337922 -149699236 + MER69A DNA AcHobo 40 177 0 243 0 0 0 chr3 68338476 68338503 -149698655 + (CA)n Simple_repeat Simple_repeat 1 27 0 201 222 0 0 chr3 68338507 68338543 -149698615 + (CCA)n Simple_repeat Simple_repeat 1 36 0 342 67 0 0 chr3 68339143 68339188 -149697970 + (CA)n Simple_repeat Simple_repeat 2 46 0 434 293 127 17 chr3 68339385 68339566 -149697592 + MIR SINE MIR 7 207 -55 1896 176 68 59 chr3 68339577 68340106 -149697052 + MER34B LTR ERV1 11 544 -21 519 255 183 0 chr3 68340476 68340629 -149696529 + MER5A DNA MER1_type 9 189 0 604 259 143 57 chr3 68340674 68341148 -149696010 - MLT1G1 LTR MaLR 0 595 81 22 70 0 0 chr3 68341394 68341437 -149695721 + AT_rich Low_complexity Low_complexity 1 43 0 3469 169 12 3 chr3 68391705 68392369 -149644789 - L1P LINE L1 -2298 3848 3179 576 173 163 2 chr3 68392390 68392558 -149644600 - L1ME LINE L1 -600 5562 5374 * 27018 110 5 5 chr3 68392542 68397876 -149639282 - L1PA6 LINE L1 0 6805 1460 269 280 60 30 chr3 68397895 68398095 -149639063 - MER113 DNA MER1_type? -282 239 34 1510 136 36 26 chr3 68398701 68399009 -149638149 - L1MA9 LINE L1 -67 6245 5935 4331 134 27 17 chr3 68399018 68399135 -149638023 - L1MA8 LINE L1 -4 6287 6173 207 0 0 0 chr3 68399135 68399158 -149638000 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2117 117 3 0 chr3 68399158 68399440 -149637718 - AluSg SINE Alu -27 283 1 4331 134 27 17 chr3 68399440 68400135 -149637023 - L1MA8 LINE L1 -117 6174 5466 2409 137 13 0 chr3 68400139 68400532 -149636626 - MER57A LTR ERV1 -5 398 1 657 165 24 8 chr3 68400532 68400659 -149636499 - L1MA8 LINE L1 -822 5469 5341 636 212 72 52 chr3 68400822 68401015 -149636143 - L2 LINE L2 -2 3311 3115 372 273 68 23 chr3 68401285 68401461 -149635697 - MER117 DNA MER1_type -9 188 5 2721 145 13 7 chr3 68401692 68402147 -149635011 + LTR32 LTR ERVL 14 471 0 1046 296 75 56 chr3 68402288 68403136 -149634022 + L2 LINE L2 2412 3283 -30 259 347 24 16 chr3 68403625 68403749 -149633409 + MIR3 SINE MIR 68 192 -16 189 261 46 15 chr3 68403961 68404026 -149633132 + L2 LINE L2 3205 3271 -1 734 288 61 0 chr3 68404402 68404631 -149632527 - MIR SINE MIR -9 253 11 1669 189 0 21 chr3 68405475 68405791 -149631367 - AluJb SINE Alu 0 311 2 201 220 140 0 chr3 68405977 68406027 -149631131 - MIR SINE MIR -2 260 204 494 353 37 16 chr3 68406094 68406281 -149630877 + L2 LINE L2 3081 3271 -1 185 315 102 28 chr3 68406266 68406374 -149630784 - MIR SINE MIR -131 131 16 * 296 287 64 0 chr3 68406920 68407014 -149630144 + MIR SINE MIR 69 168 -94 190 313 23 75 chr3 68407942 68408156 -149629002 - L2 LINE L2 -706 2608 2406 231 88 0 0 chr3 68410718 68410752 -149626406 + (CA)n Simple_repeat Simple_repeat 2 35 0 211 246 16 16 chr3 68410884 68410945 -149626213 - MIR3 SINE MIR -1 207 147 470 296 71 64 chr3 68411214 68411364 -149625794 - MLT1J LTR MaLR -44 467 320 1763 224 15 8 chr3 68411364 68411757 -149625401 - MSTD LTR MaLR 0 396 1 470 296 71 64 chr3 68411757 68411782 -149625376 - MLT1J LTR MaLR -191 320 297 2054 154 0 3 chr3 68411782 68412094 -149625064 + AluSq SINE Alu 1 311 -2 470 296 71 64 chr3 68412094 68412181 -149624977 - MLT1J LTR MaLR -214 297 202 309 229 59 85 chr3 68412181 68412334 -149624824 - LTR16C LTR ERVL -2 489 341 512 284 6 37 chr3 68412626 68412672 -149624486 - MLT1J LTR MaLR -302 209 163 3061 206 8 32 chr3 68412672 68413292 -149623866 - MER77 LTR ERV1 0 605 1 512 284 6 37 chr3 68413292 68413407 -149623751 - MLT1J LTR MaLR -348 163 53 736 199 37 0 chr3 68413415 68413551 -149623607 - MER5A DNA MER1_type -2 187 47 2077 235 75 15 chr3 68413551 68414138 -149623020 - MLT1E2 LTR MaLR 0 601 1 212 174 43 0 chr3 68414143 68414189 -149622969 - MER5A DNA MER1_type -139 50 3 226 318 0 0 chr3 68414544 68414610 -149622548 + MER103 DNA DNA 55 120 -46 773 213 11 29 chr3 68414752 68414926 -149622232 - MER5B DNA MER1_type -2 176 6 262 288 0 15 chr3 68415162 68415228 -149621930 + L2 LINE L2 3202 3266 -6 1578 134 107 8 chr3 68415382 68415643 -149621515 - AluSx SINE Alu -25 287 1 584 292 54 66 chr3 68416709 68417151 -149620007 + L1ME4a LINE L1 5508 5944 -177 425 244 52 7 chr3 68417231 68417366 -149619792 + L1ME4a LINE L1 5969 6109 -12 823 239 91 85 chr3 68417852 68418346 -149618812 + MLT1L LTR MaLR 14 510 -105 28 29 0 0 chr3 68418346 68418381 -149618777 + AT_rich Low_complexity Low_complexity 1 35 0 586 274 119 65 chr3 68420064 68420517 -149616641 + Charlie8 DNA MER1_type 1 231 -2186 27 62 0 0 chr3 68421366 68421414 -149615744 + AT_rich Low_complexity Low_complexity 1 48 0 220 361 118 28 chr3 68421418 68421562 -149615596 - L2 LINE L2 0 3272 3116 639 292 50 5 chr3 68421598 68421800 -149615358 - MIR SINE MIR 0 262 52 444 329 106 14 chr3 68422281 68422488 -149614670 - MIR SINE MIR -13 249 24 213 65 0 0 chr3 68423135 68423166 -149613992 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 254 296 122 9 chr3 68423426 68423541 -149613617 + L2 LINE L2 3169 3296 -17 257 301 231 17 chr3 68424718 68424891 -149612267 - MIR SINE MIR -16 246 37 221 315 0 0 chr3 68425316 68425370 -149611788 + (CA)n Simple_repeat Simple_repeat 1 54 0 34 0 0 0 chr3 68425645 68425679 -149611479 + AT_rich Low_complexity Low_complexity 1 34 0 185 352 76 29 chr3 68426997 68427102 -149610056 + L3b LINE CR1 1419 1528 -55 1117 171 21 34 chr3 68427308 68427547 -149609611 - MLT1C LTR MaLR -227 240 5 276 302 113 28 chr3 68427574 68427786 -149609372 + L2 LINE L2 2481 2710 -604 1323 283 123 29 chr3 68427798 68428547 -149608611 - L1ME1 LINE L1 -47 6119 5301 673 122 0 0 chr3 68428548 68428638 -149608520 - 5S rRNA rRNA -31 90 1 1359 248 42 50 chr3 68428642 68428834 -149608324 - L1ME1 LINE L1 -844 5302 5110 2298 134 10 72 chr3 68428834 68428982 -149608176 - L1MB8 LINE L1 -6 6172 6016 2524 37 7 0 chr3 68428982 68429282 -149607876 + AluY SINE Alu 1 302 -9 2298 134 10 72 chr3 68429282 68429631 -149607527 - L1MB8 LINE L1 -162 6016 5706 1359 248 42 50 chr3 68429631 68430014 -149607144 - L1ME1 LINE L1 -1036 5110 4732 751 244 22 0 chr3 68430260 68430485 -149606673 - L1ME1 LINE L1 -1538 4608 4379 2769 219 57 39 chr3 68430499 68431709 -149605449 - L1ME1 LINE L1 -5 6161 4889 1373 227 188 14 chr3 68431744 68432312 -149604846 - L1ME1 LINE L1 -1755 4391 3725 631 313 45 20 chr3 68432636 68433009 -149604149 + L2 LINE L2 2705 3096 -217 525 311 71 44 chr3 68433192 68433417 -149603741 + MIR SINE MIR 18 248 -14 200 194 0 0 chr3 68433516 68433552 -149603606 + (CA)n Simple_repeat Simple_repeat 1 36 0 1487 209 18 6 chr3 68435053 68435393 -149601765 - L1MB4 LINE L1 -5 6175 5832 618 347 44 50 chr3 68435441 68435804 -149601354 + L3 LINE CR1 1173 1533 -44 26 0 0 0 chr3 68435905 68435931 -149601227 + AT_rich Low_complexity Low_complexity 1 26 0 483 302 117 6 chr3 68437119 68437298 -149599860 + MIR SINE MIR 13 211 -51 1692 162 37 0 chr3 68437502 68437773 -149599385 + AluJb SINE Alu 1 281 -31 372 287 122 39 chr3 68438645 68438875 -149598283 + MLT1J2 LTR MaLR 199 447 -3 463 221 16 16 chr3 68439011 68439133 -149598025 + L1MC5 LINE L1 7790 7911 -50 2089 128 0 3 chr3 68439153 68439450 -149597708 + AluSx SINE Alu 1 296 -16 35025 82 8 9 chr3 68439578 68444424 -149592734 + L1P LINE L1 1 4842 -1304 228 263 59 25 chr3 68446525 68446643 -149590515 + L1ME4a LINE L1 5992 6113 -8 355 297 147 15 chr3 68446784 68446982 -149590176 + MIR SINE MIR 25 243 -19 1366 107 84 14 chr3 68447056 68447271 -149589887 - MER30 DNA MER1_type 0 230 1 1410 188 142 61 chr3 68447407 68447599 -149589559 - MER63 DNA MER1_type 0 1060 885 2201 111 0 0 chr3 68447599 68447896 -149589262 - AluSx SINE Alu -15 297 1 1410 188 142 61 chr3 68447896 68448209 -149588949 - MER63 DNA MER1_type -175 885 514 1173 207 0 68 chr3 68448194 68448503 -149588655 - MER63 DNA MER1_type -772 289 2 * 726 283 63 17 chr3 68449029 68449266 -149587892 + MIR SINE MIR 3 250 -12 186 43 0 0 chr3 68449399 68449422 -149587736 + (A)n Simple_repeat Simple_repeat 1 23 0 391 203 173 45 chr3 68450520 68450593 -149586565 + MER5A DNA MER1_type 40 102 -87 1836 153 0 0 chr3 68450593 68450898 -149586260 - AluJb SINE Alu 0 305 1 391 203 173 45 chr3 68450898 68450956 -149586202 + MER5A DNA MER1_type 102 189 0 234 253 58 71 chr3 68450998 68451152 -149586006 + MER3 DNA MER1_type 46 197 -12 * 742 170 127 0 chr3 68451021 68451186 -149585972 - MER3 DNA MER1_type -17 192 7 489 267 104 62 chr3 68451186 68451729 -149585429 - L2 LINE L2 -70 3243 2684 266 322 51 8 chr3 68452762 68452880 -149584278 - L2 LINE L2 -1 3312 3190 472 189 19 66 chr3 68453331 68453350 -149583808 + MER58A DNA MER1_type 20 38 -303 2868 155 46 0 chr3 68453350 68453846 -149583312 - MLT2B1 LTR ERVL 0 520 2 472 189 19 66 chr3 68453846 68453932 -149583226 + MER58A DNA MER1_type 38 120 -104 1405 142 68 48 chr3 68453944 68454253 -149582905 + MER33 DNA MER1_type 6 320 -4 4198 180 30 41 chr3 68454602 68455929 -149581229 + L1MB5 LINE L1 4838 6166 -8 344 238 0 48 chr3 68456064 68456169 -149580989 + LTR67 LTR ERVL 456 555 -2 508 306 8 8 chr3 68456186 68456320 -149580838 + MIR3 SINE MIR 38 171 -37 2133 148 55 8 chr3 68456630 68457029 -149580129 - MSTA LTR MaLR -3 425 8 718 288 66 9 chr3 68457405 68457631 -149579527 - MIR SINE MIR 0 262 24 180 278 0 0 chr3 68459177 68459213 -149577945 - L2 LINE L2 -2852 462 427 1344 59 12 0 chr3 68459249 68459419 -149577739 - L1PA7 LINE L1 -1 6153 5982 2849 74 9 0 chr3 68459419 68459891 -149577267 - L1PA7 LINE L1 -500 5654 5175 * 19364 98 5 20 chr3 68459886 68460698 -149576460 + L1P LINE L1 1975 2798 -3348 2800 7 0 0 chr3 68460698 68461002 -149576156 + AluYa5 SINE Alu 1 304 -7 19364 98 5 20 chr3 68461002 68463343 -149573815 + L1P LINE L1 2798 5080 -1066 23 0 0 0 chr3 68463858 68463881 -149573277 + AT_rich Low_complexity Low_complexity 1 23 0 348 289 81 64 chr3 68464361 68464596 -149572562 + MIR SINE MIR 21 259 -3 264 250 0 14 chr3 68464605 68464652 -149572506 + GA-rich Low_complexity Low_complexity 1 48 -23 1152 144 14 45 chr3 68464652 68464874 -149572284 + MER20 DNA MER1_type 1 215 -4 264 250 0 14 chr3 68464874 68464898 -149572260 + GA-rich Low_complexity Low_complexity 48 71 0 242 279 201 26 chr3 68464955 68465109 -149572049 + MIR SINE MIR 2 182 -80 198 0 0 0 chr3 68465484 68465506 -149571652 + (TG)n Simple_repeat Simple_repeat 2 23 0 417 313 66 45 chr3 68465652 68465850 -149571308 + MIR SINE MIR 34 235 -27 2889 174 50 2 chr3 68465851 68466375 -149570783 - MER44D DNA MER2_type -1 604 1 1689 118 118 0 chr3 68468189 68468460 -149568698 + AluSx SINE Alu 1 303 -9 1413 109 0 0 chr3 68468463 68468674 -149568484 + L1P LINE L1 1 211 -5935 7678 141 22 6 chr3 68468676 68470612 -149566546 - L1P4 LINE L1 -382 5786 3819 275 202 36 71 chr3 68470766 68470850 -149566308 + L2 LINE L2 3232 3312 -1 639 316 84 0 chr3 68471531 68471756 -149565402 + MIR SINE MIR 16 259 -3 2079 107 28 10 chr3 68472169 68472459 -149564699 - AluSx SINE Alu -17 295 1 2439 183 46 53 chr3 68472459 68472983 -149564175 + MLT2B1 LTR ERVL 1 520 0 348 314 58 74 chr3 68473008 68473266 -149563892 + MIR SINE MIR 8 261 -1 7823 133 14 9 chr3 68473599 68474979 -149562179 + L1P LINE L1 1055 2441 -3705 5132 55 10 2 chr3 68474987 68476054 -149561104 + L1P3 LINE L1 4679 5751 -403 230 255 226 10 chr3 68476580 68476682 -149560476 + L2 LINE L2 2933 3056 -216 207 0 0 0 chr3 68476765 68476788 -149560370 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1418 114 53 11 chr3 68477518 68477780 -149559378 - L1MA2 LINE L1 0 6304 6032 962 84 15 0 chr3 68477820 68477951 -149559207 + BC200 scRNA scRNA 5 137 -63 672 279 106 15 chr3 68478070 68478335 -149558823 - L2 LINE L2 -82 3231 2943 525 289 115 14 chr3 68479629 68479847 -149557311 + MIR SINE MIR 12 251 -11 329 290 30 30 chr3 68480627 68480727 -149556431 + MIR SINE MIR 1 100 -162 229 139 69 10 chr3 68480745 68480846 -149556312 + (TTAAA)n Simple_repeat Simple_repeat 4 110 0 22 35 0 0 chr3 68480909 68480938 -149556220 + AT_rich Low_complexity Low_complexity 1 29 0 3080 162 26 24 chr3 68481957 68482537 -149554621 - MER6A DNA MER2_type 0 605 25 261 119 0 0 chr3 68482933 68482975 -149554183 + (A)n Simple_repeat Simple_repeat 1 42 0 644 298 31 0 chr3 68483369 68483530 -149553628 + MIR SINE MIR 12 177 -85 1333 173 225 9 chr3 68483556 68483880 -149553278 - MSTB LTR MaLR 0 426 33 235 244 67 0 chr3 68484074 68484164 -149552994 + L1MC5 LINE L1 7260 7355 -606 1220 203 68 66 chr3 68484172 68484685 -149552473 + MER39 LTR ERV1 6 687 -20 708 241 55 78 chr3 68484769 68485242 -149551916 + L1MC5 LINE L1 7452 7913 -48 389 216 69 35 chr3 68485341 68485457 -149551701 - HsTC2 DNA Tc2 -322 1576 1281 449 217 42 17 chr3 68485470 68485590 -149551568 - HsTC2 DNA Tc2 -1752 146 24 1498 160 84 0 chr3 68485714 68486013 -149551145 - AluJb SINE Alu 0 321 1 325 352 45 11 chr3 68486720 68486896 -149550262 - MIR SINE MIR -58 204 23 662 219 246 0 chr3 68486988 68487203 -149549955 - MER5C DNA MER1_type -56 268 1 2288 94 3 10 chr3 68487840 68488138 -149549020 + AluSp SINE Alu 1 296 -17 21 36 0 0 chr3 68489253 68489281 -149547877 + AT_rich Low_complexity Low_complexity 1 28 0 2081 68 12 0 chr3 68490001 68490253 -149546905 + AluY SINE Alu 39 293 -18 333 263 230 20 chr3 68490278 68490430 -149546728 - MIR SINE MIR -76 186 3 345 238 126 92 chr3 68490609 68490870 -149546288 - MER102a DNA MER1_type -7 323 54 1004 308 39 49 chr3 68490924 68491537 -149545621 + MLT1L LTR MaLR 1 607 -8 225 0 0 0 chr3 68492252 68492277 -149544881 + (CA)n Simple_repeat Simple_repeat 1 25 0 563 252 15 0 chr3 68492839 68492970 -149544188 - MIR SINE MIR -50 212 80 331 221 115 19 chr3 68494007 68494111 -149543047 + Charlie2b DNA MER1_type 43 156 -2706 666 206 30 18 chr3 68494129 68494294 -149542864 + Charlie2b DNA MER1_type 502 668 -2114 1291 215 62 25 chr3 68494376 68494776 -149542382 + Charlie2a DNA MER1_type 1482 1896 -966 195 256 0 0 chr3 68494917 68494960 -149542198 - L3 LINE CR1 -3 1574 1532 301 257 14 27 chr3 68495174 68495248 -149541910 - MIR3 SINE MIR -49 159 87 1360 221 121 29 chr3 68496045 68496747 -149540411 - Charlie2 DNA MER1_type -96 2766 2000 441 227 11 32 chr3 68496986 68497259 -149539899 + GA-rich Low_complexity Low_complexity 1 267 0 6613 68 8 3 chr3 68497262 68498393 -149538765 + L1PA6 LINE L1 5019 6153 -1 2218 85 0 0 chr3 68499765 68500047 -149537111 - AluY SINE Alu -29 282 1 212 297 212 17 chr3 68500102 68500220 -149536938 + MIR SINE MIR 13 153 -109 349 200 0 0 chr3 68500220 68500285 -149536873 - MER113 DNA MER1_type? -1 520 456 21 0 0 0 chr3 68500330 68500351 -149536807 + AT_rich Low_complexity Low_complexity 1 21 0 1836 192 39 10 chr3 68500361 68500746 -149536412 + MSTD LTR MaLR 1 396 0 307 205 39 47 chr3 68500811 68500938 -149536220 + L1MC5 LINE L1 7094 7219 -742 257 323 16 16 chr3 68501350 68501539 -149535619 + L1MC4 LINE L1 7693 7881 -161 2025 145 3 10 chr3 68501701 68502012 -149535146 - AluSq SINE Alu -4 309 1 788 142 0 7 chr3 68504516 68504657 -149532501 + (TAGA)n Simple_repeat Simple_repeat 4 143 0 630 231 65 24 chr3 68506670 68506839 -149530319 + MER63A DNA MER1_type 4 179 -31 538 280 20 50 chr3 68507359 68507559 -149529599 + MER63A DNA MER1_type 6 199 -11 220 296 62 74 chr3 68508808 68508970 -149528188 - MIR SINE MIR -16 246 87 705 295 91 72 chr3 68509112 68509272 -149527886 - L2 LINE L2 -1 3312 3157 2046 149 32 16 chr3 68509272 68509641 -149527517 - THE1C LTR MaLR 0 375 1 705 295 91 72 chr3 68509641 68510244 -149526914 - L2 LINE L2 -156 3157 2534 1993 117 29 45 chr3 68510541 68510849 -149526309 + AluSx SINE Alu 1 303 -9 214 329 12 24 chr3 68511013 68511095 -149526063 - L2 LINE L2 -14 3299 3219 188 313 62 0 chr3 68511251 68511331 -149525827 + MIR SINE MIR 76 160 -102 247 343 64 14 chr3 68512971 68513111 -149524047 - L2 LINE L2 -18 3295 3149 264 308 85 32 chr3 68513752 68513941 -149523217 + MIR SINE MIR 24 220 -42 248 297 16 0 chr3 68514138 68514202 -149522956 + L2 LINE L2 3186 3250 -22 227 334 107 54 chr3 68515318 68515909 -149521249 - L2 LINE L2 -4 3268 2638 274 368 98 14 chr3 68516041 68516318 -149520840 + L2 LINE L2 3005 3304 -9 329 339 92 56 chr3 68516324 68516760 -149520398 - L2 LINE L2 -837 2477 2058 2120 94 0 18 chr3 68516760 68517046 -149520112 + AluSx SINE Alu 1 281 -31 375 23 0 0 chr3 68517046 68517090 -149520068 + (CA)n Simple_repeat Simple_repeat 1 44 0 329 339 92 56 chr3 68517090 68517150 -149520008 - L2 LINE L2 -1255 2059 1962 344 318 56 0 chr3 68517317 68517424 -149519734 - L2 LINE L2 -2 3311 3199 528 272 81 46 chr3 68517579 68517925 -149519233 - LTR16C LTR ERVL -9 482 125 461 240 89 20 chr3 68518311 68518457 -149518701 - MIR SINE MIR -1 261 106 327 49 0 0 chr3 68518541 68518582 -149518576 + (CA)n Simple_repeat Simple_repeat 2 42 0 27 0 0 0 chr3 68518698 68518725 -149518433 + AT_rich Low_complexity Low_complexity 1 27 0 331 331 25 16 chr3 68519632 68519753 -149517405 + L2 LINE L2 3149 3270 -2 286 333 33 66 chr3 68520131 68520374 -149516784 + L2 LINE L2 2830 3064 -208 398 135 14 14 chr3 68520596 68520670 -149516488 - MLT1K LTR MaLR -4 584 511 239 228 0 69 chr3 68520670 68520697 -149516461 - LTR67 LTR ERVL -4 553 460 812 220 65 5 chr3 68520909 68521095 -149516063 + MIR SINE MIR 1 197 -65 21 0 0 0 chr3 68521901 68521922 -149515236 + AT_rich Low_complexity Low_complexity 1 21 0 2150 76 0 0 chr3 68521989 68522251 -149514907 - AluY SINE Alu -13 298 37 592 126 0 0 chr3 68522320 68522407 -149514751 + MLT1A2 LTR MaLR 1 87 -287 514 281 35 29 chr3 68523014 68523185 -149513973 + MIR SINE MIR 2 173 -89 180 309 202 0 chr3 68523462 68523556 -149513602 + L2 LINE L2 3157 3269 -3 189 242 97 16 chr3 68524594 68524656 -149512502 - L2 LINE L2 -808 2506 2440 22 0 0 0 chr3 68525071 68525093 -149512065 + AT_rich Low_complexity Low_complexity 1 22 0 30 27 0 0 chr3 68525610 68525647 -149511511 + AT_rich Low_complexity Low_complexity 1 37 0 212 189 67 22 chr3 68526264 68526354 -149510804 + (TATATG)n Simple_repeat Simple_repeat 6 99 0 2124 117 0 0 chr3 68526542 68526847 -149510311 + AluSx SINE Alu 1 305 0 4490 179 39 17 chr3 68526992 68528782 -149508376 - L1MB7 LINE L1 -11 6173 4339 437 234 9 9 chr3 68528884 68528995 -149508163 - L1MB7 LINE L1 -1789 4357 4247 1577 247 41 6 chr3 68531306 68531791 -149505367 - L1ME3 LINE L1 -10 6152 5651 278 186 0 34 chr3 68532403 68532462 -149504696 + MER94 DNA DNA 1 57 -77 78 30 0 0 chr3 68532462 68532561 -149504597 + AT_rich Low_complexity Low_complexity 1 99 0 26 0 0 0 chr3 68532642 68532668 -149504490 + AT_rich Low_complexity Low_complexity 1 26 0 1807 140 43 7 chr3 68532677 68532956 -149504202 + AluJo SINE Alu 1 289 -23 360 372 55 0 chr3 68533130 68533294 -149503864 - L2 LINE L2 -1 3312 3140 783 126 0 59 chr3 68533417 68533552 -149503606 - FLAM_C SINE Alu -6 127 1 1215 249 77 8 chr3 68533571 68533933 -149503225 + MER20B DNA MER1_type 113 499 -284 1899 140 19 50 chr3 68534644 68534965 -149502193 - AluSx SINE Alu -1 311 1 567 225 67 0 chr3 68535004 68535182 -149501976 + MER20B DNA MER1_type 515 704 -79 540 332 29 57 chr3 68535677 68535944 -149501214 - L2 LINE L2 -455 2859 2601 2290 110 0 0 chr3 68535944 68536244 -149500914 + AluY SINE Alu 1 300 -11 540 332 29 57 chr3 68536244 68536292 -149500866 - L2 LINE L2 -713 2601 2553 353 209 74 49 chr3 68538556 68538719 -149498439 - L1MC5 LINE L1 -44 7917 7751 319 122 0 0 chr3 68538753 68538802 -149498356 + MER68 LTR ERV1 1 49 -513 2906 170 18 2 chr3 68538878 68539383 -149497775 + MER68 LTR ERV1 50 562 0 332 252 52 37 chr3 68539501 68539636 -149497522 + L2 LINE L2 3117 3253 -60 206 231 0 58 chr3 68539992 68540044 -149497114 + MER5A DNA MER1_type 141 189 0 406 274 33 20 chr3 68540489 68540642 -149496516 - MER90 LTR ERV1 0 614 460 230 269 48 19 chr3 68540816 68540920 -149496238 + L1ME LINE L1 5665 5771 -391 25 31 0 0 chr3 68541052 68541084 -149496074 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr3 68542204 68542229 -149494929 + AT_rich Low_complexity Low_complexity 1 25 0 349 281 185 0 chr3 68542410 68542545 -149494613 - MER91A DNA MER1_type -33 163 4 281 301 10 113 chr3 68543178 68543381 -149493777 - MER5A DNA MER1_type -1 188 7 2170 106 3 3 chr3 68544287 68544580 -149492578 - AluY SINE Alu -18 293 1 1449 161 51 58 chr3 68545671 68546100 -149491058 + LTR37A LTR ERV1 1 426 0 538 265 131 62 chr3 68546162 68546520 -149490638 + L2 LINE L2 2920 3302 -11 1364 235 71 49 chr3 68546520 68547033 -149490125 + MER39 LTR ERV1 1 585 0 607 195 161 27 chr3 68547388 68547537 -149489621 + MER5A DNA MER1_type 7 175 -14 403 272 16 41 chr3 68547549 68547712 -149489446 + MIR SINE MIR 23 185 -62 5255 127 15 2 chr3 68547714 68548580 -149488578 - L1PA16 LINE L1 0 6166 5290 2147 125 13 3 chr3 68548629 68548933 -149488225 + AluSx SINE Alu 1 307 -5 311 228 9 114 chr3 68549326 68549440 -149487718 - MIR3 SINE MIR -92 116 15 310 248 62 106 chr3 68549815 68549976 -149487182 - L2 LINE L2 -1 3312 3159 29 28 0 0 chr3 68550305 68550341 -149486817 + AT_rich Low_complexity Low_complexity 1 36 0 2192 122 26 0 chr3 68550431 68550735 -149486423 + AluSx SINE Alu 1 312 0 283 156 0 39 chr3 68550738 68550815 -149486343 + A-rich Low_complexity Low_complexity 5 78 0 1096 241 59 0 chr3 68551109 68551412 -149485746 + MER58B DNA MER1_type 21 341 0 1177 183 108 48 chr3 68552165 68552565 -149484593 + LTR37A LTR ERV1 1 424 -2 1631 169 91 48 chr3 68552798 68553236 -149483922 - MER31B LTR ERV1 -9 457 1 3766 83 8 0 chr3 68553459 68553977 -149483181 - L1PA13 LINE L1 -3 6160 5639 2480 110 15 2 chr3 68554063 68554534 -149482624 - L1PA13 LINE L1 -532 5631 5157 440 232 261 7 chr3 68554819 68554961 -149482197 + MER5A DNA MER1_type 9 186 -3 452 320 87 50 chr3 68555272 68555594 -149481564 + L1MC4a LINE L1 5740 6073 -1735 207 333 14 0 chr3 68555713 68555782 -149481376 - L3 LINE CR1 -65 1512 1443 220 271 146 0 chr3 68555883 68555979 -149481179 - L3 LINE CR1 -243 1334 1225 424 283 100 43 chr3 68555992 68556271 -149480887 - MER102b DNA MER1_type -20 321 27 212 288 99 63 chr3 68557993 68558104 -149479054 + MIR SINE MIR 34 148 -60 1176 174 14 157 chr3 68558573 68558999 -149478159 + MLT1A1 LTR MaLR 1 365 0 281 190 30 100 chr3 68559811 68559911 -149477247 + MER69 DNA AcHobo 1 93 -1133 2484 70 0 6 chr3 68559981 68560293 -149476865 + AluY SINE Alu 1 310 -1 616 174 0 8 chr3 68560311 68560432 -149476726 + MER69 DNA AcHobo 2403 2522 -4 377 247 59 53 chr3 68561250 68561420 -149475738 - MIR SINE MIR 0 262 92 2230 123 3 3 chr3 68562086 68562395 -149474763 - AluSc SINE Alu 0 309 1 509 201 78 141 chr3 68562433 68562517 -149474641 + L1ME3A LINE L1 5853 5941 -229 1700 186 17 10 chr3 68562517 68562818 -149474340 + AluJo SINE Alu 3 305 -7 509 201 78 141 chr3 68562818 68563067 -149474091 + L1ME3A LINE L1 5941 6165 -5 29 28 0 0 chr3 68564013 68564049 -149473109 + AT_rich Low_complexity Low_complexity 1 36 0 380 221 13 130 chr3 68565387 68565618 -149471540 + MER113 DNA MER1_type? 7 210 -311 447 276 26 0 chr3 68566619 68566735 -149470423 + MIR SINE MIR 74 192 -70 400 248 57 32 chr3 68568807 68568964 -149468194 + L1ME4a LINE L1 5950 6110 -11 184 192 0 77 chr3 68570234 68570286 -149466872 - L2 LINE L2 0 3313 3266 24249 39 5 0 chr3 68570414 68574180 -149462978 + L1PA4 LINE L1 2383 6152 -3 1792 151 210 23 chr3 68574227 68574665 -149462493 + MLT2B1 LTR ERVL 1 520 0 712 254 79 51 chr3 68574971 68575365 -149461793 + MLT1L LTR MaLR 149 553 -62 263 258 0 0 chr3 68575655 68575717 -149461441 + MLT1L LTR MaLR 544 605 -10 2798 141 133 50 chr3 68576864 68577517 -149459641 - MER39 LTR ERV1 0 707 1 321 207 0 0 chr3 68578515 68578597 -149458561 + (ATG)n Simple_repeat Simple_repeat 2 83 0 357 304 108 7 chr3 68578608 68578756 -149458402 + MER5A DNA MER1_type 1 163 -26 652 287 24 0 chr3 68578774 68578938 -149458220 + MIR SINE MIR 7 174 -88 439 264 46 30 chr3 68578975 68579172 -149457986 + HAL1 LINE L1 2015 2214 -293 383 282 52 28 chr3 68579202 68579415 -149457743 + HAL1 LINE L1 2290 2507 0 816 304 87 5 chr3 68579728 68580130 -149457028 - LTR33 LTR ERVL -86 435 1 228 67 0 0 chr3 68580146 68580176 -149456982 + (TTG)n Simple_repeat Simple_repeat 2 31 0 589 258 0 38 chr3 68580294 68580499 -149456659 - MIR SINE MIR -48 214 19 312 204 109 58 chr3 68581219 68581356 -149455802 - LTR67 LTR ERVL -2 555 412 378 0 0 0 chr3 68581987 68582029 -149455129 + (ATG)n Simple_repeat Simple_repeat 2 43 0 698 269 52 5 chr3 68582052 68582264 -149454894 - MIR SINE MIR -11 251 30 429 256 0 0 chr3 68585021 68585146 -149452012 + (TA)n Simple_repeat Simple_repeat 1 125 0 381 155 0 0 chr3 68585146 68585204 -149451954 + (CA)n Simple_repeat Simple_repeat 1 58 0 1139 167 26 26 chr3 68585230 68585499 -149451659 + SVA Other Other 452 720 -666 386 299 92 24 chr3 68585600 68585807 -149451351 + L1MEc LINE L1 1256 1476 -4920 2167 107 3 7 chr3 68585864 68586163 -149450995 + AluY SINE Alu 4 301 -10 1327 101 0 0 chr3 68586163 68586332 -149450826 + AluSq SINE Alu 134 302 -11 24 0 0 0 chr3 68587170 68587194 -149449964 + AT_rich Low_complexity Low_complexity 1 24 0 465 246 176 20 chr3 68587206 68587372 -149449786 + L1MC5 LINE L1 6766 6905 -1056 1873 117 14 24 chr3 68587372 68587662 -149449496 + AluSq SINE Alu 1 287 -26 465 246 176 20 chr3 68587662 68587915 -149449243 + L1MC5 LINE L1 6905 7182 -779 440 269 64 38 chr3 68588076 68588369 -149448789 + L1ME3A LINE L1 5662 5962 -208 250 255 104 0 chr3 68588855 68588961 -149448197 + L1MEc LINE L1 2279 2395 -3820 40023 62 7 1 chr3 68589037 68595155 -149442003 - L1PA4 LINE L1 -3 6152 1 420 200 21 0 chr3 68595349 68595444 -149441714 - MER34 LTR ERV1 -443 99 3 218 260 302 10 chr3 68596754 68596850 -149440308 - MER5B DNA MER1_type -54 124 1 247 311 28 9 chr3 68597087 68597193 -149439965 - MLT1K LTR MaLR -352 236 129 328 228 51 0 chr3 68597238 68597317 -149439841 - MER91C DNA MER1_type -46 94 12 356 227 0 13 chr3 68597689 68597764 -149439394 - MER5A DNA MER1_type -103 86 13 207 0 0 0 chr3 68597850 68597873 -149439285 + (TA)n Simple_repeat Simple_repeat 1 23 0 297 235 118 10 chr3 68597873 68597975 -149439183 + MIR SINE MIR 94 206 -56 556 301 105 51 chr3 68597984 68598411 -149438747 - L2 LINE L2 -97 3216 2767 253 273 41 58 chr3 68598919 68599040 -149438118 - MIR3 SINE MIR -23 185 67 248 318 12 12 chr3 68599138 68599223 -149437935 + L2 LINE L2 3134 3218 -54 383 228 24 71 chr3 68599473 68599600 -149437558 + L2 LINE L2 3163 3283 -30 722 273 29 11 chr3 68599776 68599974 -149437184 + MIR SINE MIR 48 246 -16 185 222 0 0 chr3 68599943 68599979 -149437179 + L2 LINE L2 3261 3296 -17 * 487 226 131 0 chr3 68600946 68601083 -149436075 + MIR3 SINE MIR 43 197 -11 256 317 218 15 chr3 68601136 68601338 -149435820 + MIR SINE MIR 20 262 0 375 134 61 37 chr3 68601357 68601521 -149435637 + (TA)n Simple_repeat Simple_repeat 2 169 0 239 183 84 14 chr3 68601541 68601612 -149435546 + MIR SINE MIR 109 184 -78 1270 102 6 0 chr3 68601979 68602145 -149435013 - AluSg/x SINE Alu -17 293 127 831 285 9 0 chr3 68602274 68602488 -149434670 - MIR SINE MIR -26 236 21 251 216 67 118 chr3 68603011 68603266 -149433892 - L1ME4a LINE L1 -41 6080 5839 233 204 19 0 chr3 68603381 68603435 -149433723 - L1ME4a LINE L1 -448 5673 5619 244 203 211 39 chr3 68603685 68603813 -149433345 - MLT1L LTR MaLR 0 615 466 272 227 27 0 chr3 68604023 68604098 -149433060 - L1ME4a LINE L1 -74 6047 5971 212 288 0 30 chr3 68604171 68604237 -149432921 + L2 LINE L2 3209 3272 0 604 271 29 58 chr3 68604248 68604558 -149432600 - L1ME4a LINE L1 -253 5868 5568 265 206 16 0 chr3 68604745 68604808 -149432350 - L1MC4a LINE L1 -1865 5943 5880 2066 139 0 10 chr3 68605289 68605592 -149431566 - AluSx SINE Alu -12 300 1 445 190 111 90 chr3 68605993 68606100 -149431058 + MER34 LTR ERV1 226 329 -213 3226 143 76 49 chr3 68606100 68606773 -149430385 - LTR8 LTR ERV1 0 691 1 445 190 111 90 chr3 68606773 68606954 -149430204 + MER34 LTR ERV1 329 520 -22 222 288 0 0 chr3 68607620 68607679 -149429479 + MER5B DNA MER1_type 1 59 -119 293 182 18 0 chr3 68607691 68607746 -149429412 - MER5B DNA MER1_type 0 178 123 249 146 0 0 chr3 68607824 68607865 -149429293 - MER5B DNA MER1_type -136 42 2 1006 224 82 72 chr3 68608050 68608588 -149428570 + MER39 LTR ERV1 1 707 0 737 266 23 14 chr3 68608784 68608998 -149428160 - MIR SINE MIR -33 229 14 317 227 201 35 chr3 68609039 68609186 -149427972 + MER5A DNA MER1_type 4 187 -2 996 115 26 26 chr3 68609268 68609403 -149427755 - L1MA8 LINE L1 -7 6284 6147 4183 90 0 0 chr3 68609403 68609957 -149427201 + MER41A LTR ERV1 1 554 0 996 115 26 26 chr3 68609957 68610012 -149427146 - L1MA8 LINE L1 -143 6148 6094 2313 54 3 22 chr3 68610144 68610458 -149426700 + L1PA8 LINE L1 5865 6172 0 185 211 84 28 chr3 68610675 68610746 -149426412 + L2 LINE L2 3234 3308 -5 320 291 133 19 chr3 68611370 68611528 -149425630 - MIR SINE MIR -13 249 74 290 177 65 0 chr3 68612472 68612534 -149424624 + MIR3 SINE MIR 122 187 -21 526 281 29 7 chr3 68612754 68612893 -149424265 + MIR3 SINE MIR 10 151 -57 507 287 58 11 chr3 68613107 68613281 -149423877 + MIR SINE MIR 23 204 -58 531 0 0 0 chr3 68613505 68613564 -149423594 + (CA)n Simple_repeat Simple_repeat 2 60 0 568 299 37 45 chr3 68615515 68615759 -149421399 + L2 LINE L2 3044 3285 -28 183 321 142 9 chr3 68615876 68615982 -149421176 - L2 LINE L2 -5 3267 3148 1385 308 51 8 chr3 68617062 68617530 -149419628 - LTR16C LTR ERVL -3 488 1 350 240 154 57 chr3 68617988 68618105 -149419053 + L2 LINE L2 3120 3261 -52 2277 107 3 0 chr3 68618105 68618404 -149418754 + AluSg SINE Alu 1 300 -10 350 240 154 57 chr3 68618404 68618461 -149418697 + L2 LINE L2 3261 3311 -2 184 283 50 0 chr3 68618710 68618770 -149418388 - MIR3 SINE MIR -2 206 144 33 73 0 0 chr3 68618828 68618896 -149418262 + AT_rich Low_complexity Low_complexity 1 68 0 202 257 108 0 chr3 68619551 68619625 -149417533 - L2 LINE L2 -18 3295 3214 1272 230 51 111 chr3 68619977 68620511 -149416647 - L2 LINE L2 -6 3307 2780 609 222 262 8 chr3 68620636 68620884 -149416274 - MER46C DNA MER2_type -26 312 2 23 0 0 0 chr3 68621350 68621373 -149415785 + AT_rich Low_complexity Low_complexity 1 23 0 3846 59 16 6 chr3 68621910 68622422 -149414736 - L1PA7 LINE L1 0 6154 5638 25632 134 29 81 chr3 68622425 68622812 -149414346 - L1P LINE L1 -1062 5084 4678 283 103 0 0 chr3 68622812 68622851 -149414307 + U2 snRNA snRNA 1 39 -149 25632 134 29 81 chr3 68622851 68627790 -149409368 - L1P LINE L1 -1468 4678 3 576 275 110 25 chr3 68628986 68629383 -149407775 + MLT1K LTR MaLR 141 588 0 491 299 302 3 chr3 68629545 68629843 -149407315 + L3 LINE CR1 1191 1577 0 1879 182 12 6 chr3 68629872 68630218 -149406940 - MER7A DNA MER2_type 0 346 1 270 374 74 26 chr3 68631228 68631578 -149405580 - L2 LINE L2 -338 2976 2610 669 223 147 68 chr3 68631638 68632167 -149404991 + L1ME4a LINE L1 5535 6105 -16 254 192 82 0 chr3 68632178 68632203 -149404955 + MER116 DNA Mariner 1 23 -57 1500 185 84 34 chr3 68632203 68632559 -149404599 + MLT1A2 LTR MaLR 1 374 0 254 192 82 0 chr3 68632559 68632606 -149404552 + MER116 DNA Mariner 23 79 -1 1287 167 43 1 chr3 68632885 68633364 -149403794 + MLT1F1 LTR MaLR 3 562 -5 1326 190 68 48 chr3 68633364 68633623 -149403535 + MER2 DNA MER2_type 1 270 -74 1981 156 13 0 chr3 68633623 68633925 -149403233 - AluJb SINE Alu -6 306 1 1326 190 68 48 chr3 68633925 68634002 -149403156 + MER2 DNA MER2_type 270 344 0 2165 102 0 0 chr3 68634433 68634708 -149402450 - AluSx SINE Alu -15 297 23 348 222 78 0 chr3 68635909 68635999 -149401159 + MIR SINE MIR 77 173 -89 3562 111 20 10 chr3 68636238 68636850 -149400308 - L1MA1 LINE L1 0 6302 5685 5814 143 6 2 chr3 68636956 68638626 -149398532 - L1MA1 LINE L1 -378 5924 4247 446 197 183 14 chr3 68639120 68639262 -149397896 + MIR SINE MIR 88 253 -9 1126 185 86 72 chr3 68639268 68639560 -149397598 - AluJo SINE Alu -5 297 2 809 162 0 0 chr3 68639586 68639703 -149397455 - FLAM_C SINE Alu -16 117 1 359 301 89 7 chr3 68639818 68639964 -149397194 - MLT1J LTR MaLR -114 397 240 1751 245 77 27 chr3 68639993 68640553 -149396605 - MLT1G1 LTR MaLR -2 593 6 1056 292 109 52 chr3 68640619 68641043 -149396115 - L2 LINE L2 -12 3301 2903 2019 146 7 0 chr3 68641043 68641344 -149395814 + AluSx SINE Alu 1 303 -9 1056 292 109 52 chr3 68641344 68641721 -149395437 - L2 LINE L2 -410 2903 2430 207 0 0 0 chr3 68642507 68642530 -149394628 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 294 29 0 0 chr3 68642529 68642564 -149394594 + (CA)n Simple_repeat Simple_repeat 2 36 0 218 238 0 0 chr3 68642595 68642637 -149394521 + (TA)n Simple_repeat Simple_repeat 1 42 0 1916 188 28 42 chr3 68642637 68643067 -149394091 + MSTA LTR MaLR 1 424 -4 195 42 0 0 chr3 68643070 68643094 -149394064 + (CA)n Simple_repeat Simple_repeat 1 24 0 522 242 147 11 chr3 68644158 68644348 -149392810 + MLT1F LTR MaLR 1 216 -351 975 183 75 5 chr3 68644348 68644561 -149392597 + MER34B LTR ERV1 1 228 -337 1644 149 67 3 chr3 68644638 68644967 -149392191 + MER34B LTR ERV1 216 565 0 1692 165 67 13 chr3 68644975 68645260 -149391898 + MLT1F LTR MaLR 211 516 -26 1655 129 0 0 chr3 68645260 68645492 -149391666 + AluSg SINE Alu 60 291 -19 1692 165 67 13 chr3 68645492 68645521 -149391637 + MLT1F LTR MaLR 516 542 0 1907 168 0 0 chr3 68645694 68645986 -149391172 + AluJo SINE Alu 2 293 -19 364 285 151 0 chr3 68646149 68646305 -149390853 - MIR SINE MIR -66 142 18 328 204 11 43 chr3 68648050 68648143 -149389015 + MLT1G1 LTR MaLR 490 579 -16 470 260 63 37 chr3 68648635 68648904 -149388254 + L1ME4a LINE L1 5670 5945 -176 * 852 247 38 67 chr3 68648900 68649233 -149387925 + L1MC/D LINE L1 5372 5692 -2116 1619 198 37 18 chr3 68649233 68649616 -149387542 + MLT1B LTR MaLR 1 390 0 852 247 38 67 chr3 68649616 68649699 -149387459 + L1MC/D LINE L1 5692 5776 -2032 279 54 0 0 chr3 68649720 68649757 -149387401 + (TG)n Simple_repeat Simple_repeat 2 38 0 1266 138 124 5 chr3 68649889 68650107 -149387051 + AluSq SINE Alu 11 254 -59 1009 246 129 29 chr3 68651730 68652217 -149384941 + MLT1H1 LTR MaLR 12 547 -8 265 303 0 20 chr3 68653420 68653519 -149383639 + MLT1K LTR MaLR 3 99 -489 426 355 107 8 chr3 68653535 68653797 -149383361 - L2 LINE L2 -570 2744 2457 1052 274 8 4 chr3 68653910 68654158 -149383000 + MIR SINE MIR 7 255 -7 4007 110 3 2 chr3 68654899 68655491 -149381667 + L1PA13 LINE L1 5571 6163 0 23 0 0 0 chr3 68656099 68656122 -149381036 + AT_rich Low_complexity Low_complexity 1 23 0 213 313 132 28 chr3 68656138 68656282 -149380876 - L2 LINE L2 -562 2752 2594 26 0 0 0 chr3 68656813 68656839 -149380319 + AT_rich Low_complexity Low_complexity 1 26 0 198 0 0 0 chr3 68656961 68656983 -149380175 + (A)n Simple_repeat Simple_repeat 1 22 0 1019 155 82 0 chr3 68657003 68657210 -149379948 - Tigger2 DNA MER2_type 0 2718 2495 270 179 119 12 chr3 68658210 68658294 -149378864 - L1M4 LINE L1 -1426 4720 4628 * 5651 88 6 1 chr3 68658293 68659107 -149378051 + L1PA13 LINE L1 5343 6160 -3 828 69 0 0 chr3 68659149 68659251 -149377907 - AluSg/x SINE Alu -12 298 197 603 201 28 0 chr3 68659253 68659397 -149377761 - L1M4 LINE L1 -2439 3707 3560 256 248 171 9 chr3 68659580 68659685 -149377473 + L2 LINE L2 3190 3311 -2 333 283 132 0 chr3 68659831 68659937 -149377221 - L2 LINE L2 -4 3268 3149 282 29 0 0 chr3 68660028 68660063 -149377095 + (TG)n Simple_repeat Simple_repeat 2 36 0 189 74 0 0 chr3 68660062 68660089 -149377069 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 * 296 148 16 0 chr3 68660585 68660646 -149376512 + CT-rich Low_complexity Low_complexity 3 64 0 395 227 22 124 chr3 68660653 68660704 -149376454 - L1MA10 LINE L1 -5 6267 6212 1882 135 0 0 chr3 68660704 68660963 -149376195 + AluSx SINE Alu 24 282 -30 217 0 0 0 chr3 68660963 68660987 -149376171 + (TAAA)n Simple_repeat Simple_repeat 1 76 0 395 227 22 124 chr3 68660987 68661207 -149375951 - L1MA10 LINE L1 -60 6212 5917 499 95 0 0 chr3 68661336 68661410 -149375748 - L1P LINE L1 -841 5305 5232 2485 76 0 19 chr3 68661443 68661760 -149375398 - AluY SINE Alu 0 311 1 854 262 12 35 chr3 68662308 68662564 -149374594 + MIR SINE MIR 13 262 0 317 280 101 58 chr3 68663234 68663441 -149373717 - LTR16C LTR ERVL -91 400 185 195 250 58 125 chr3 68663980 68664100 -149373058 + MIR SINE MIR 30 141 -67 37 0 0 0 chr3 68664105 68664142 -149373016 + AT_rich Low_complexity Low_complexity 1 37 0 190 340 0 0 chr3 68664145 68664195 -149372963 + MIR3 SINE MIR 148 197 -11 516 217 8 58 chr3 68664565 68664685 -149372473 + MER94 DNA DNA 8 121 -13 5317 131 1 0 chr3 68664936 68665710 -149371448 + L1P LINE L1 235 1009 -5137 * 17669 46 108 4 chr3 68665691 68668321 -149368837 + L1P2 LINE L1 2696 5617 -537 1849 112 0 4 chr3 68668295 68668564 -149368594 + L1PA5 LINE L1 5887 6154 0 * 922 149 4 124 chr3 68669172 68669414 -149367744 - AluSc SINE Alu -7 302 90 379 276 30 0 chr3 68669517 68669651 -149367507 - L1M4 LINE L1 -860 5286 5149 395 342 1 13 chr3 68670047 68670215 -149366943 + MIR3 SINE MIR 29 155 -53 188 355 24 42 chr3 68670354 68670520 -149366638 - L2 LINE L2 -1405 1909 1747 323 107 18 0 chr3 68670614 68670670 -149366488 - L1MB7 LINE L1 0 6184 6128 420 256 51 156 chr3 68670846 68671190 -149365968 + MLT1K LTR MaLR 141 519 -69 2692 80 5 54 chr3 68671190 68671563 -149365595 + THE1A LTR MaLR 1 355 0 420 256 51 156 chr3 68671563 68671586 -149365572 + MLT1K LTR MaLR 519 452 -136 1534 247 15 9 chr3 68671586 68671918 -149365240 + MER58B DNA MER1_type 4 337 -4 420 256 51 156 chr3 68671918 68672017 -149365141 + MLT1K LTR MaLR 451 559 -29 960 209 6 0 chr3 68672143 68672315 -149364843 + MER45A DNA AcHobo 6 178 0 234 239 0 0 chr3 68673032 68673103 -149364055 + CT-rich Low_complexity Low_complexity 3 73 0 403 242 189 72 chr3 68673132 68673549 -149363609 - L1ME4a LINE L1 -3 6118 5653 22 35 0 0 chr3 68674269 68674298 -149362860 + AT_rich Low_complexity Low_complexity 1 29 0 30 0 0 0 chr3 68674574 68674604 -149362554 + AT_rich Low_complexity Low_complexity 1 30 0 374 256 36 107 chr3 68674687 68674855 -149362303 + MIR SINE MIR 105 260 -2 519 132 0 0 chr3 68674868 68674959 -149362199 + (CAT)n Simple_repeat Simple_repeat 1 91 0 223 318 6 84 chr3 68676598 68676700 -149360458 + L2 LINE L2 2631 2739 -575 228 35 0 0 chr3 68676700 68676729 -149360429 + (TG)n Simple_repeat Simple_repeat 2 30 0 2345 71 44 0 chr3 68676729 68677023 -149360135 - AluSc SINE Alu -2 307 1 223 318 6 84 chr3 68677023 68677098 -149360060 + L2 LINE L2 2737 2795 -519 28 29 0 0 chr3 68677148 68677183 -149359975 + AT_rich Low_complexity Low_complexity 1 35 0 1164 194 153 8 chr3 68677296 68677544 -149359614 + MLT1D LTR MaLR 214 497 -8 1790 185 3 3 chr3 68677671 68677979 -149359179 + AluJo SINE Alu 1 308 -4 21 0 0 0 chr3 68678007 68678028 -149359130 + AT_rich Low_complexity Low_complexity 1 21 0 269 146 0 0 chr3 68678610 68678658 -149358500 + MER20 DNA MER1_type 114 161 -58 1757 121 21 94 chr3 68678802 68679133 -149358025 + AluYb8 SINE Alu 1 307 -11 3016 150 14 6 chr3 68679725 68680212 -149356946 - L1MB3 LINE L1 -2 6181 5691 349 327 9 0 chr3 68680492 68680602 -149356556 - MIR SINE MIR -13 249 139 590 279 144 0 chr3 68680607 68680829 -149356329 + MIR SINE MIR 7 260 -2 245 413 8 0 chr3 68681085 68681211 -149355947 + MIR3 SINE MIR 30 156 -52 1943 128 3 51 chr3 68681324 68681637 -149355521 - AluSx SINE Alu -14 298 1 283 339 73 8 chr3 68681752 68681876 -149355282 + L2 LINE L2 2917 3048 -224 1201 43 0 0 chr3 68682700 68682838 -149354320 + L1PA4 LINE L1 6010 6147 -8 572 260 8 8 chr3 68682855 68682982 -149354176 + MER5A DNA MER1_type 61 187 -2 759 145 7 103 chr3 68683042 68683187 -149353971 + FLAM_C SINE Alu 2 132 -1 1564 171 17 30 chr3 68683210 68683508 -149353650 + AluJo SINE Alu 5 298 -14 182 319 31 88 chr3 68684152 68684312 -149352846 - L2 LINE L2 -252 3061 2911 2380 91 0 28 chr3 68684430 68684750 -149352408 + AluY SINE Alu 1 311 0 1817 160 27 7 chr3 68684763 68685063 -149352095 + AluJb SINE Alu 2 307 -5 802 87 31 0 chr3 68685063 68685190 -149351968 + (GGGAA)n Simple_repeat Simple_repeat 2 132 0 519 164 23 8 chr3 68685199 68685327 -149351831 + GA-rich Low_complexity Low_complexity 2 131 0 2448 102 54 25 chr3 68685389 68685743 -149351415 - THE1B LTR MaLR 0 364 1 1506 180 99 13 chr3 68685794 68686136 -149351022 + L1MB8 LINE L1 5802 6178 0 632 273 187 55 chr3 68686862 68687375 -149349783 - MLT1K LTR MaLR -7 581 1 468 279 76 13 chr3 68687529 68687687 -149349471 + LTR33 LTR ERVL 9 176 -345 766 195 31 13 chr3 68687763 68687922 -149349236 + LTR33 LTR ERVL 358 519 -2 387 221 58 0 chr3 68687966 68688052 -149349106 - MIR SINE MIR -58 204 114 218 243 14 54 chr3 68688058 68688132 -149349026 + L2 LINE L2 2632 2702 -612 2750 100 19 5 chr3 68688219 68688589 -149348569 - THE1C LTR MaLR 0 375 1 204 349 60 0 chr3 68688696 68688779 -149348379 + L2 LINE L2 3003 3090 -182 409 345 115 6 chr3 68688836 68689001 -149348157 + L2 LINE L2 3088 3270 -2 308 264 55 27 chr3 68689203 68689313 -149347845 + L1MD3 LINE L1 6397 6509 -1486 891 216 10 5 chr3 68689327 68689535 -149347623 + L1MD3 LINE L1 7773 7981 -14 394 293 242 42 chr3 68689645 68689980 -149347178 - L3 LINE CR1 -6 1571 1170 491 206 211 29 chr3 68690477 68690652 -149346506 - MIR SINE MIR -55 207 1 2267 112 0 0 chr3 68690653 68690948 -149346210 - AluSx SINE Alu -17 295 1 1097 179 0 0 chr3 68691162 68691341 -149345817 + FRAM SINE Alu 1 176 0 903 287 129 52 chr3 68691593 68692098 -149345060 + MLT1K LTR MaLR 4 547 -41 246 215 54 62 chr3 68692123 68692253 -149344905 + L2 LINE L2 3040 3168 -145 2935 233 51 5 chr3 68692359 68693507 -149343651 - L1ME LINE L1 -563 5603 4360 1588 158 23 0 chr3 68694235 68694495 -149342663 + L1PA16 LINE L1 5897 6162 -4 2409 53 0 0 chr3 68694782 68695114 -149342044 - AluY SINE Alu 0 333 2 828 267 131 29 chr3 68695339 68695827 -149341331 + MLT1G LTR MaLR 8 567 0 1568 171 3 55 chr3 68696690 68696999 -149340159 - AluJb SINE Alu -16 296 4 224 241 60 36 chr3 68697069 68697152 -149340006 + L2 LINE L2 3188 3272 0 1535 86 0 5 chr3 68697449 68697675 -149339483 + AluSq SINE Alu 88 312 0 2251 98 0 3 chr3 68698711 68699008 -149338150 + AluSx SINE Alu 1 296 -16 239 279 74 49 chr3 68700299 68700421 -149336737 + L2 LINE L2 3146 3270 -2 189 0 0 0 chr3 68700664 68700685 -149336473 + (CA)n Simple_repeat Simple_repeat 2 22 0 1634 151 4 0 chr3 68700685 68700944 -149336214 - AluSx SINE Alu -38 274 15 3123 217 39 7 chr3 68701694 68702419 -149334739 + L1MB7 LINE L1 5437 6184 0 2043 128 0 16 chr3 68702430 68702736 -149334422 + AluSx SINE Alu 1 301 -11 6662 73 26 52 chr3 68704288 68706258 -149330900 - SVA Other Other -520 1386 13 5689 93 52 1 chr3 68707325 68708118 -149329040 - L1PA13 LINE L1 -24 6139 5307 887 279 125 51 chr3 68708161 68708706 -149328452 + MLT1K LTR MaLR 2 586 -2 427 328 45 11 chr3 68708713 68708890 -149328268 - MIR SINE MIR -74 188 6 549 293 52 26 chr3 68710029 68710258 -149326900 - MIR SINE MIR -24 238 4 523 194 19 0 chr3 68710334 68710442 -149326716 - L1MB4 LINE L1 0 6180 6071 258 91 0 0 chr3 68710563 68710596 -149326562 - Tigger2 DNA MER2_type -2685 33 1 201 315 0 0 chr3 68711204 68711258 -149325900 + L2 LINE L2 2714 2767 -547 251 355 11 0 chr3 68711613 68711706 -149325452 - L2 LINE L2 0 3272 3179 307 225 109 70 chr3 68711915 68712043 -149325115 - MLT1K LTR MaLR -182 433 312 2189 42 0 45 chr3 68712043 68712331 -149324827 - AluY SINE Alu -36 275 1 307 225 109 70 chr3 68712331 68712454 -149324704 - MLT1K LTR MaLR -303 312 174 779 301 68 62 chr3 68712674 68712933 -149324225 - L2 LINE L2 -728 2586 2330 441 0 0 0 chr3 68712933 68712982 -149324176 + (TG)n Simple_repeat Simple_repeat 2 50 0 779 301 68 62 chr3 68712982 68713267 -149323891 - L2 LINE L2 -984 2330 2039 2980 142 65 74 chr3 68715230 68715787 -149321371 + MLT2B3 LTR ERVL 3 554 0 213 351 0 0 chr3 68715882 68715956 -149321202 + MIR SINE MIR 81 154 -108 1121 197 76 51 chr3 68715960 68716315 -149320843 - MER96B DNA MER1_type? 0 417 54 257 280 27 0 chr3 68716500 68716575 -149320583 + LTR16C LTR ERVL 157 233 -258 515 225 18 0 chr3 68716628 68716739 -149320419 + MER96B DNA MER1_type? 6 118 -299 274 193 12 84 chr3 68716801 68716884 -149320274 + MER34B LTR ERV1 38 114 -451 261 207 78 112 chr3 68717224 68717340 -149319818 + LTR49 LTR ERV1 480 591 -4 2502 147 35 10 chr3 68719548 68719950 -149317208 - MLT2D LTR ERVL -2 412 1 576 318 33 9 chr3 68720286 68720497 -149316661 - MIR SINE MIR -45 217 2 298 324 88 0 chr3 68721414 68721516 -149315642 + L2 LINE L2 3202 3312 -1 457 248 116 8 chr3 68722712 68722833 -149314325 - MIR SINE MIR -111 151 18 4545 153 45 17 chr3 68722854 68723675 -149313483 - L1MB1 LINE L1 -44 6124 5281 239 186 0 17 chr3 68724110 68724169 -149312989 + (TA)n Simple_repeat Simple_repeat 1 58 0 526 167 167 86 chr3 68724453 68724651 -149312507 - LTR16C LTR ERVL 0 491 278 1039 157 17 11 chr3 68724652 68724830 -149312328 + MER5A DNA MER1_type 1 179 -10 452 278 29 16 chr3 68725004 68725145 -149312013 - MIR SINE MIR -54 154 2 21 36 0 0 chr3 68725811 68725839 -149311319 + AT_rich Low_complexity Low_complexity 1 28 0 442 256 34 8 chr3 68726037 68726154 -149311004 + MER5A DNA MER1_type 9 128 -61 * 519 304 94 36 chr3 68726138 68726362 -149310796 + MIR SINE MIR 24 260 -2 1033 231 72 68 chr3 68727451 68727879 -149309279 + L1MC4 LINE L1 7573 8002 -40 315 298 158 18 chr3 68728552 68728723 -149308435 + MIR SINE MIR 1 195 -67 252 320 48 0 chr3 68728949 68729052 -149308106 + MIR SINE MIR 47 154 -108 857 193 66 110 chr3 68729316 68729355 -149307803 - L1ME3 LINE L1 -1 6161 6122 1835 111 28 4 chr3 68729355 68729608 -149307550 - AluSx SINE Alu -15 297 39 857 193 66 110 chr3 68729608 68729869 -149307289 - L1ME3 LINE L1 -40 6122 5874 219 36 0 0 chr3 68729872 68729900 -149307258 + (TG)n Simple_repeat Simple_repeat 2 29 0 812 143 0 8 chr3 68729950 68730076 -149307082 + FLAM_C SINE Alu 1 125 -18 369 312 110 78 chr3 68731597 68732141 -149305017 + L2 LINE L2 2697 3259 -13 228 296 37 12 chr3 68732744 68732825 -149304333 - MIR SINE MIR -105 103 21 409 304 64 8 chr3 68732831 68732956 -149304202 - L2 LINE L2 -1 3271 3140 682 315 36 23 chr3 68733177 68733485 -149303673 + LTR16C LTR ERVL 180 491 0 198 338 15 0 chr3 68734251 68734319 -149302839 + L2 LINE L2 3240 3308 -5 294 349 81 27 chr3 68735774 68736184 -149300974 + L2 LINE L2 2538 2969 -345 405 310 54 8 chr3 68736721 68736850 -149300308 - MIR SINE MIR -75 187 53 369 0 0 0 chr3 68737249 68737290 -149299868 + (TG)n Simple_repeat Simple_repeat 2 42 0 259 248 19 76 chr3 68737317 68737418 -149299740 + L1ME4a LINE L1 5974 6064 -57 2425 100 0 0 chr3 68737418 68737728 -149299430 - AluSx SINE Alu -2 310 1 259 248 19 76 chr3 68737728 68737783 -149299375 + L1ME4a LINE L1 6064 6121 0 1245 264 82 52 chr3 68737810 68738784 -149298374 + L1ME LINE L1 4736 5739 -423 1217 136 42 33 chr3 68738986 68739200 -149297958 + MER20 DNA MER1_type 1 216 -3 278 269 202 0 chr3 68740824 68740928 -149296230 - MIR SINE MIR -130 132 8 195 360 107 7 chr3 68740960 68741110 -149296048 + L2 LINE L2 2808 2972 -300 556 190 10 0 chr3 68741784 68741830 -149295328 + MER3 DNA MER1_type 1 47 -162 270 143 0 117 chr3 68741830 68741907 -149295251 - MER3 DNA MER1_type 0 209 142 260 345 93 43 chr3 68742150 68742213 -149294945 + L2 LINE L2 3022 3080 -233 414 0 0 0 chr3 68742213 68742259 -149294899 + (TG)n Simple_repeat Simple_repeat 1 46 0 1811 137 3 32 chr3 68742259 68742543 -149294615 - AluSx SINE Alu -33 279 4 260 345 93 43 chr3 68742543 68742756 -149294402 + L2 LINE L2 3079 3313 0 722 314 57 59 chr3 68743212 68743726 -149293432 + L2 LINE L2 2776 3271 -1 295 214 107 36 chr3 68744019 68744103 -149293055 - MIR SINE MIR -145 117 28 372 243 111 48 chr3 68745178 68745367 -149291791 - MIR SINE MIR -6 256 56 273 314 42 8 chr3 68745771 68745889 -149291269 - MIR3 SINE MIR -3 205 84 1941 150 0 0 chr3 68745961 68746248 -149290910 + AluJo SINE Alu 21 307 -5 2910 221 40 1 chr3 68746263 68746913 -149290245 - L1ME1 LINE L1 -5 6161 5487 2423 61 3 35 chr3 68747033 68747345 -149289813 - AluY SINE Alu -9 302 1 906 263 28 12 chr3 68747819 68748074 -149289084 - MIR SINE MIR -1 261 3 1862 149 61 15 chr3 68748376 68748704 -149288454 + MER2 DNA MER2_type 2 344 0 373 260 7 96 chr3 68748755 68748820 -149288338 - MER5A DNA MER1_type 0 189 120 2105 107 7 0 chr3 68748820 68749100 -149288058 + AluSx SINE Alu 2 283 -29 440 18 18 0 chr3 68749100 68749157 -149288001 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 373 260 7 96 chr3 68749157 68749236 -149287922 - MER5A DNA MER1_type -67 122 57 240 299 84 9 chr3 68749373 68749480 -149287678 + LTR67 LTR ERVL 81 195 -362 252 211 28 14 chr3 68749636 68749707 -149287451 + LTR67 LTR ERVL 471 542 -15 1361 248 104 23 chr3 68750625 68751065 -149286093 + MLT1K LTR MaLR 1 476 0 991 235 51 45 chr3 68752383 68752715 -149284443 - L1ME4a LINE L1 -266 5855 5522 201 259 19 0 chr3 68752808 68752862 -149284296 - L2 LINE L2 -31 3241 3187 363 206 0 0 chr3 68752973 68753036 -149284122 + MIR SINE MIR 88 150 -112 667 244 0 0 chr3 68753086 68753221 -149283937 + AluJo SINE Alu 2 136 -176 2353 75 0 23 chr3 68753358 68753666 -149283492 + AluY SINE Alu 1 301 -10 236 173 39 0 chr3 68754063 68754139 -149283019 + (TA)n Simple_repeat Simple_repeat 1 78 0 449 248 92 9 chr3 68754152 68754261 -149282897 - L2 LINE L2 -15 3298 3181 1477 167 0 16 chr3 68754381 68754633 -149282525 + AluJb SINE Alu 43 290 -22 1381 198 99 13 chr3 68754658 68754972 -149282186 - MER58B DNA MER1_type 0 341 1 454 289 9 0 chr3 68754973 68755113 -149282045 - L1ME LINE L1 -303 5818 5676 281 361 31 31 chr3 68755174 68755365 -149281793 - L3 LINE CR1 -1086 491 301 216 0 0 0 chr3 68756095 68756119 -149281039 + (TA)n Simple_repeat Simple_repeat 2 25 0 772 158 158 0 chr3 68756435 68756593 -149280565 + MER20 DNA MER1_type 37 219 0 761 307 162 33 chr3 68756710 68757493 -149279665 - L2 LINE L2 -1 3271 2345 2155 130 0 0 chr3 68757493 68757793 -149279365 - AluSx SINE Alu -12 300 1 761 307 162 33 chr3 68757793 68757977 -149279181 - L2 LINE L2 -927 2345 2186 1365 147 101 82 chr3 68757980 68758286 -149278872 - MLT1B LTR MaLR -10 380 69 1311 197 7 45 chr3 68758286 68758575 -149278583 + MLT1A1 LTR MaLR 1 278 -87 2182 129 7 3 chr3 68758807 68759116 -149278042 + AluSx SINE Alu 1 310 -2 1647 170 0 27 chr3 68759167 68759461 -149277697 + AluJo SINE Alu 9 294 -18 2329 181 12 63 chr3 68759472 68759964 -149277194 + MLT1C LTR MaLR 1 467 0 2503 110 8 33 chr3 68760004 68760368 -149276790 - THE1A LTR MaLR 0 355 1 2081 128 45 43 chr3 68761038 68761412 -149275746 + THE1C LTR MaLR 1 375 0 597 276 84 38 chr3 68761421 68761660 -149275498 - MIR SINE MIR -8 254 5 232 224 0 24 chr3 68762154 68762239 -149274919 + (TA)n Simple_repeat Simple_repeat 2 84 0 24 53 0 0 chr3 68762564 68762602 -149274556 + AT_rich Low_complexity Low_complexity 1 38 0 210 191 0 0 chr3 68763105 68763147 -149274011 + MIR SINE MIR 156 197 -65 282 325 35 0 chr3 68764287 68764401 -149272757 - MER117 DNA MER1_type -61 136 19 201 370 35 71 chr3 68764490 68764744 -149272414 - L2 LINE L2 -50 3222 2978 259 222 19 0 chr3 68764790 68764844 -149272314 - Charlie1a DNA MER1_type -15 1440 1386 2236 139 3 0 chr3 68764853 68765163 -149271995 + AluSx SINE Alu 2 312 0 2703 132 41 83 chr3 68765168 68765773 -149271385 + L1MB4 LINE L1 5593 6172 -8 1776 181 54 11 chr3 68765773 68766216 -149270942 - Charlie1a DNA MER1_type -39 1416 955 1670 144 62 25 chr3 68766225 68766579 -149270579 - L1MA9 LINE L1 0 6312 5946 786 200 0 0 chr3 68766582 68766742 -149270416 + MER58 DNA MER1_type 2258 2417 -3 364 78 47 0 chr3 68766744 68766808 -149270350 + T-rich Low_complexity Low_complexity 2 68 0 221 56 0 28 chr3 68766831 68766867 -149270291 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 39467 39 2 59 chr3 68766867 68771421 -149265737 - L1PA4 LINE L1 -24 6131 1321 1845 143 7 0 chr3 68771421 68771701 -149265457 - AluSx SINE Alu -7 305 24 39467 39 2 59 chr3 68771701 68771825 -149265333 - L1PA4 LINE L1 -4834 1321 1192 9718 75 7 80 chr3 68771825 68773321 -149263837 + SVA Other Other 1 1386 0 39467 39 2 59 chr3 68773321 68775155 -149262003 - L1PA4 LINE L1 -4963 1192 2 2945 213 63 65 chr3 68775155 68776085 -149261073 - Charlie1a DNA MER1_type -482 973 45 312 272 25 12 chr3 68776186 68776267 -149260891 - L2 LINE L2 -4 3309 3228 373 132 13 26 chr3 68776297 68776373 -149260785 - L1MB4 LINE L1 0 6180 6106 868 172 0 14 chr3 68776390 68776535 -149260623 - FLAM_C SINE Alu 0 143 1 3682 229 136 47 chr3 68776536 68777085 -149260073 - L1M4 LINE L1 -871 5275 4776 1742 146 32 7 chr3 68777085 68777366 -149259792 - AluSx SINE Alu -23 289 2 3682 229 136 47 chr3 68777366 68777694 -149259464 - L1M4 LINE L1 -1370 4776 4479 2342 141 55 38 chr3 68777694 68777747 -149259411 - MSTB LTR MaLR 0 426 375 1704 121 136 0 chr3 68777747 68778019 -149259139 - AluSx SINE Alu -3 309 1 2342 141 55 38 chr3 68778019 68778384 -149258774 - MSTB LTR MaLR -51 375 1 3682 229 136 47 chr3 68778384 68779714 -149257444 - L1M4 LINE L1 -1667 4479 2857 677 276 14 14 chr3 68779724 68779934 -149257224 - L2 LINE L2 -769 2545 2336 311 261 36 36 chr3 68780676 68780814 -149256344 - L1MC4a LINE L1 -1815 5993 5856 770 234 80 25 chr3 68780815 68781054 -149256104 - L1MC4a LINE L1 -1991 5817 5566 241 329 130 0 chr3 68781243 68781389 -149255769 - MIR SINE MIR -10 252 88 4865 49 0 3 chr3 68781423 68781435 -149255723 - L1PA6 LINE L1 0 6154 6143 2485 81 3 0 chr3 68781435 68781745 -149255413 - AluSp SINE Alu 0 313 3 632 35 23 0 chr3 68781745 68781831 -149255327 + (TTTC)n Simple_repeat Simple_repeat 2 89 0 4865 49 0 3 chr3 68781831 68782413 -149254745 - L1PA6 LINE L1 -9 6145 5561 242 189 66 66 chr3 68783128 68783234 -149253924 + L1ME LINE L1 533 638 -5432 347 310 50 25 chr3 68783366 68783763 -149253395 + L1ME LINE L1 699 1105 -4873 437 324 109 14 chr3 68783817 68784166 -149252992 + L1ME LINE L1 1253 1675 -4446 414 249 123 30 chr3 68784167 68784500 -149252658 + L1ME LINE L1 1712 2075 -4186 * 444 216 6 72 chr3 68784474 68784655 -149252503 + L1MD3 LINE L1 7649 7817 -112 1627 164 22 0 chr3 68784885 68785153 -149252005 - AluJb SINE Alu -38 274 1 432 221 0 0 chr3 68785153 68785230 -149251928 + MER2 DNA MER2_type 269 345 0 1712 238 60 33 chr3 68785650 68785661 -149251497 + L1ME3 LINE L1 5405 5414 -748 2338 101 0 0 chr3 68785661 68785958 -149251200 - AluSx SINE Alu -15 297 1 1712 238 60 33 chr3 68785958 68786213 -149250945 + L1ME3 LINE L1 5414 5661 -501 1840 119 45 7 chr3 68786213 68786499 -149250659 + AluSx SINE Alu 1 297 -15 1712 238 60 33 chr3 68786499 68786971 -149250187 + L1ME3 LINE L1 5661 6161 -1 1839 148 3 11 chr3 68787072 68787356 -149249802 - AluSx SINE Alu -30 282 1 216 0 0 0 chr3 68787439 68787463 -149249695 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 1744 139 51 7 chr3 68787468 68787742 -149249416 - AluSx SINE Alu -25 287 2 225 94 0 0 chr3 68788201 68788233 -149248925 + (TC)n Simple_repeat Simple_repeat 1 32 0 405 0 0 0 chr3 68788233 68788278 -149248880 + (CA)n Simple_repeat Simple_repeat 1 45 0 379 352 31 25 chr3 68788282 68788444 -149248714 - MIR SINE MIR -87 175 13 508 279 81 37 chr3 68789319 68789562 -149247596 + MIR SINE MIR 16 262 0 217 184 20 0 chr3 68790206 68790255 -149246903 + (TA)n Simple_repeat Simple_repeat 2 51 0 389 278 70 0 chr3 68790494 68790609 -149246549 + L2 LINE L2 3148 3270 -2 249 119 0 0 chr3 68790856 68790898 -149246260 + (TG)n Simple_repeat Simple_repeat 1 42 0 1558 175 3 24 chr3 68790929 68791267 -149245891 + AluJb SINE Alu 1 332 0 384 278 99 5 chr3 68791965 68792156 -149245002 - HAL1 LINE L1 -5 2502 2294 1519 215 83 5 chr3 68792160 68792556 -149244602 - MER110 LTR ERV1 0 491 65 1022 173 6 0 chr3 68792639 68792801 -149244357 - FRAM SINE Alu -19 157 1 707 179 36 0 chr3 68793145 68793285 -149243873 + L1PA13 LINE L1 6016 6160 -3 27 29 0 0 chr3 68793285 68793319 -149243839 + AT_rich Low_complexity Low_complexity 1 34 0 477 277 106 38 chr3 68793669 68793904 -149243254 + MIR SINE MIR 12 262 0 274 116 0 0 chr3 68793936 68793979 -149243179 - AluJo SINE Alu -7 293 251 1330 136 174 0 chr3 68793979 68794215 -149242943 - AluSx SINE Alu -35 277 1 2789 185 24 26 chr3 68794378 68795037 -149242121 - L1MB8 LINE L1 -282 5896 5232 1433 178 36 57 chr3 68795037 68795562 -149241596 - MER34B LTR ERV1 0 565 3 3541 202 46 16 chr3 68795562 68796499 -149240659 - L1MB8 LINE L1 -926 5220 4256 216 0 0 0 chr3 68797551 68797575 -149239583 + (T)n Simple_repeat Simple_repeat 1 24 0 458 259 37 43 chr3 68797603 68797765 -149239393 - MIR SINE MIR -95 167 7 1408 214 18 27 chr3 68797775 68798107 -149239051 + MER58B DNA MER1_type 13 341 0 182 226 57 57 chr3 68798165 68798218 -149238940 - MER5A DNA MER1_type -89 100 48 1554 203 96 84 chr3 68799227 68799715 -149237443 - MLT1F1 LTR MaLR 0 567 74 417 227 149 7 chr3 68799817 68799958 -149237200 - L2 LINE L2 -5 3308 3148 233 348 17 43 chr3 68800342 68800457 -149236701 - L3 LINE CR1 -411 1166 1055 1238 182 21 70 chr3 68801279 68801565 -149235593 - AluJo SINE Alu -40 272 1 737 301 49 51 chr3 68802080 68802552 -149234606 + LTR33A LTR ERVL 1 471 -52 1881 225 31 15 chr3 68802569 68803026 -149234132 + L1MDa LINE L1 17 480 -6060 * 1923 239 42 5 chr3 68803014 68803604 -149233554 + L1MDa LINE L1 2840 3451 -3089 1829 153 16 26 chr3 68803623 68803762 -149233396 + AluJo SINE Alu 1 140 -172 2201 115 0 0 chr3 68803762 68804050 -149233108 + AluSc SINE Alu 1 288 -21 1829 153 16 26 chr3 68804050 68804218 -149232940 + AluJo SINE Alu 140 305 -7 1145 296 64 11 chr3 68804251 68804691 -149232467 - LTR33 LTR ERVL -58 463 1 615 278 71 5 chr3 68804982 68805180 -149231978 + MIR SINE MIR 46 256 -6 296 321 0 0 chr3 68806135 68806216 -149230942 + L2 LINE L2 3201 3281 -32 1627 147 60 12 chr3 68806217 68806536 -149230622 + Tigger3(Golem) DNA MER2_type 2684 3017 -12 207 301 38 15 chr3 68806841 68806974 -149230184 + (TATATG)n Simple_repeat Simple_repeat 3 138 0 542 292 44 83 chr3 68807095 68807734 -149229424 + L2 LINE L2 2650 3277 -36 746 167 0 14 chr3 68807772 68807910 -149229248 - MER45A DNA AcHobo -3 175 40 436 244 30 8 chr3 68807916 68808047 -149229111 + MIR SINE MIR 94 227 -35 541 199 81 22 chr3 68808975 68809032 -149228126 + MIR SINE MIR 87 139 -123 829 278 113 31 chr3 68809032 68809510 -149227648 + LTR33 LTR ERVL 1 517 -4 541 199 81 22 chr3 68809510 68809588 -149227570 + MIR SINE MIR 139 230 -32 265 328 31 31 chr3 68809747 68809875 -149227283 + MLT1K LTR MaLR 152 279 -309 682 246 41 0 chr3 68809916 68810087 -149227071 - MER97c DNA MER1_type? -911 179 2 273 229 177 21 chr3 68810532 68810628 -149226530 + MIR3 SINE MIR 87 197 -11 613 197 90 0 chr3 68810879 68811001 -149226157 + FLAM_C SINE Alu 1 133 -10 22 0 0 0 chr3 68811006 68811028 -149226130 + AT_rich Low_complexity Low_complexity 1 22 0 1176 161 0 16 chr3 68811080 68811272 -149225886 + AluJo SINE Alu 107 295 -17 1711 201 49 29 chr3 68811560 68812012 -149225146 - MLT1C LTR MaLR -1 466 6 1833 161 4 0 chr3 68812452 68812726 -149224432 + AluSx SINE Alu 1 275 -37 33 25 0 0 chr3 68812726 68812766 -149224392 + AT_rich Low_complexity Low_complexity 1 40 0 334 258 96 75 chr3 68812831 68813071 -149224087 + MLT1J LTR MaLR 238 482 -29 332 345 86 52 chr3 68813096 68813493 -149223665 + L2 LINE L2 2809 3270 -2 811 111 0 8 chr3 68813958 68814075 -149223083 + AluSg/x SINE Alu 176 291 -21 1208 249 134 37 chr3 68814189 68814651 -149222507 + MLT1J LTR MaLR 5 511 0 1400 199 29 146 chr3 68814980 68815499 -149221659 - MLT1F1 LTR MaLR 0 567 110 837 195 18 0 chr3 68815514 68815678 -149221480 - FRAM SINE Alu -6 170 4 502 246 16 8 chr3 68815684 68815806 -149221352 - MLT1F1 LTR MaLR -470 123 1 246 326 20 0 chr3 68815922 68816020 -149221138 - L2 LINE L2 -2 3311 3212 605 274 123 0 chr3 68816248 68816427 -149220731 + MIR SINE MIR 31 231 -31 214 125 0 50 chr3 68817327 68817367 -149219791 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 189 308 43 77 chr3 68817597 68817714 -149219444 + MIR SINE MIR 31 143 -65 529 278 49 0 chr3 68817751 68817895 -149219263 - L2 LINE L2 -1 3312 3162 2122 141 0 0 chr3 68817926 68818230 -149218928 + AluSx SINE Alu 1 304 -8 460 257 121 26 chr3 68818230 68818576 -149218582 - L1ME LINE L1 -510 5656 5270 602 201 0 0 chr3 68818577 68818687 -149218471 + MER33 DNA MER1_type 1 100 -86 2212 105 0 0 chr3 68818693 68819009 -149218149 - AluSg SINE Alu 0 319 4 275 250 110 0 chr3 68819033 68819133 -149218025 + MER33 DNA MER1_type 69 179 -145 2649 150 12 14 chr3 68819166 68819593 -149217565 - MSTB LTR MaLR 0 426 1 * 3347 151 39 19 chr3 68819593 68820153 -149217005 + LTR39 LTR ERV1 213 783 0 276 246 0 0 chr3 68820153 68820212 -149216946 + Charlie8 DNA MER1_type 100 158 -2259 1558 93 5 5 chr3 68820220 68820425 -149216733 + AluSp SINE Alu 1 205 -108 861 178 64 13 chr3 68820732 68820889 -149216269 - AluJo SINE Alu -26 286 122 3797 205 23 17 chr3 68820965 68821712 -149215446 + MER45B DNA AcHobo 3 753 -287 380 243 118 13 chr3 68822088 68822240 -149214918 + MIR SINE MIR 81 248 -14 463 267 41 54 chr3 68822470 68822563 -149214595 - L1ME LINE L1 -303 5818 5725 1731 157 3 14 chr3 68822563 68822967 -149214191 - AluJo SINE Alu 0 401 1 463 267 41 54 chr3 68822967 68823093 -149214065 - L1ME LINE L1 -396 5725 5601 980 297 74 25 chr3 68823118 68823482 -149213676 + MLT1I LTR MaLR 28 409 0 1633 111 18 0 chr3 68825785 68826010 -149211148 - L1MC1 LINE L1 0 6333 6105 2229 147 12 0 chr3 68826010 68826351 -149210807 - L1MC1 LINE L1 -104 6229 5885 240 256 136 40 chr3 68826907 68827032 -149210126 + L2 LINE L2 3132 3268 -4 539 155 175 0 chr3 68827137 68827234 -149209924 - Tigger1 DNA MER2_type -5 2413 2300 770 171 0 24 chr3 68827237 68827360 -149209798 + FLAM_C SINE Alu 5 124 -19 1808 147 116 0 chr3 68827374 68827701 -149209457 - Tigger1 DNA MER2_type -583 1835 1471 1383 126 10 0 chr3 68827702 68827900 -149209258 - AluSg/x SINE Alu -4 306 107 298 93 0 0 chr3 68827925 68827968 -149209190 - Tigger1 DNA MER2_type -939 1479 1437 1074 103 0 0 chr3 68827969 68828105 -149209053 + AluSq/x SINE Alu 1 136 -177 906 212 11 0 chr3 68828216 68828395 -149208763 + AluSg/x SINE Alu 100 280 -32 8868 132 36 14 chr3 68828411 68829808 -149207350 - Tigger1 DNA MER2_type -968 1450 24 207 281 0 0 chr3 68830068 68830125 -149207033 - MIR SINE MIR -26 236 180 959 151 0 31 chr3 68830125 68830317 -149206841 + MER96B DNA MER1_type? 191 376 -41 241 322 39 21 chr3 68830327 68830473 -149206685 - MIR SINE MIR -63 145 30 289 310 30 0 chr3 68830490 68830590 -149206568 - MIR SINE MIR -67 141 39 222 286 16 0 chr3 68830670 68830733 -149206425 - L2 LINE L2 -1 3312 3249 261 57 0 0 chr3 68831148 68831183 -149205975 + HSMAR1 DNA Mariner 1 35 -1252 204 375 0 0 chr3 68831183 68831255 -149205903 + L2 LINE L2 3217 3288 -25 28 0 0 0 chr3 68831620 68831648 -149205510 + AT_rich Low_complexity Low_complexity 1 28 0 205 29 29 29 chr3 68831709 68831744 -149205414 + (TA)n Simple_repeat Simple_repeat 1 35 0 297 0 0 0 chr3 68831759 68831792 -149205366 + (TG)n Simple_repeat Simple_repeat 2 34 0 405 280 0 0 chr3 68831807 68831907 -149205251 + MIR SINE MIR 90 189 -73 798 286 94 10 chr3 68831932 68832324 -149204834 + LTR16A LTR ERVL 26 450 0 300 53 0 0 chr3 68832381 68832419 -149204739 + (TTA)n Simple_repeat Simple_repeat 1 38 0 259 226 97 0 chr3 68832570 68832632 -149204526 - L2 LINE L2 -1 3271 3204 234 275 109 65 chr3 68833028 68833166 -149203992 - L2 LINE L2 -5 3267 3124 1599 173 70 7 chr3 68833192 68833464 -149203694 + AluJo SINE Alu 1 289 -23 255 254 82 55 chr3 68834227 68834337 -149202821 + L1MEd LINE L1 458 570 -5549 1701 145 33 43 chr3 68834898 68835202 -149201956 + AluJo SINE Alu 3 303 -9 465 299 0 21 chr3 68836319 68836463 -149200695 + MLT1L LTR MaLR 447 587 -28 1587 149 22 22 chr3 68837029 68837297 -149199861 + AluJo SINE Alu 41 308 -4 483 267 73 13 chr3 68837313 68837463 -149199695 - MIR SINE MIR -92 170 12 1396 155 89 29 chr3 68838077 68838393 -149198765 + L1MA4 LINE L1 5965 6299 -1 2359 93 0 3 chr3 68838407 68838708 -149198450 + AluSc SINE Alu 1 300 -9 1323 191 60 40 chr3 68838763 68839061 -149198097 + AluJo SINE Alu 5 308 -4 614 211 67 70 chr3 68839210 68839494 -149197664 - HAL1b LINE L1 -29 1319 1037 3462 157 43 20 chr3 68839647 68840164 -149196994 - L1MB5 LINE L1 -13 6161 5658 15391 124 38 21 chr3 68840164 68840357 -149196801 - Tigger1 DNA MER2_type -1 2417 2229 1577 161 95 0 chr3 68840357 68840630 -149196528 + AluJb SINE Alu 1 299 -13 2215 124 7 0 chr3 68840630 68840936 -149196222 + AluSq SINE Alu 1 308 -5 15391 124 38 21 chr3 68840936 68842367 -149194791 - Tigger1 DNA MER2_type -189 2229 824 1948 143 0 19 chr3 68842367 68842682 -149194476 + AluSx SINE Alu 1 309 -3 15391 124 38 21 chr3 68842682 68842888 -149194270 - Tigger1 DNA MER2_type -1594 824 623 269 26 26 0 chr3 68842888 68842926 -149194232 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1625 206 7 0 chr3 68842930 68843212 -149193946 - AluJo SINE Alu -28 284 1 15391 124 38 21 chr3 68843212 68843750 -149193408 - Tigger1 DNA MER2_type -1797 621 1 3462 157 43 20 chr3 68843750 68843832 -149193326 - L1MB5 LINE L1 -516 5658 5548 2090 98 10 14 chr3 68844148 68844444 -149192714 + AluSq SINE Alu 4 298 -15 191 242 125 102 chr3 68844758 68844886 -149192272 + MIR SINE MIR 17 147 -61 532 243 131 14 chr3 68845375 68845597 -149191561 - MIR SINE MIR -12 250 3 228 246 18 0 chr3 68845914 68845971 -149191187 - L2 LINE L2 -1 3312 3255 1038 211 10 19 chr3 68846242 68846550 -149190608 - AluYa5 SINE Alu 0 311 7 684 183 23 40 chr3 68846810 68846985 -149190173 + MER45B DNA AcHobo 780 951 -89 232 276 11 23 chr3 68846993 68847080 -149190078 - MER34 LTR ERV1 -8 534 449 511 269 19 88 chr3 68847224 68847484 -149189674 - MER34 LTR ERV1 -278 264 23 449 188 12 0 chr3 68847499 68847579 -149189579 + MER45B DNA AcHobo 960 1040 0 561 271 89 25 chr3 68848549 68848988 -149188170 - L1ME4a LINE L1 -1 6120 5654 2059 138 10 0 chr3 68849790 68850086 -149187072 - AluSx SINE Alu -13 299 1 2656 218 94 19 chr3 68850603 68851272 -149185886 + MER72 LTR ERV1 4 722 0 423 308 26 46 chr3 68851412 68851607 -149185551 + L2 LINE L2 2869 3059 -254 204 254 114 61 chr3 68851749 68851863 -149185295 + L2 LINE L2 3123 3242 -71 335 222 75 60 chr3 68851863 68852068 -149185090 - MER34 LTR ERV1 -5 537 438 5185 100 34 0 chr3 68852240 68852953 -149184205 - L1PA13 LINE L1 -2 6161 5425 270 254 0 45 chr3 68853155 68853222 -149183936 + L2 LINE L2 3250 3313 0 401 208 58 25 chr3 68853805 68853925 -149183233 - L1MC5 LINE L1 -30 7931 7808 43 35 0 0 chr3 68853977 68854034 -149183124 + AT_rich Low_complexity Low_complexity 1 57 0 251 258 11 11 chr3 68854059 68854152 -149183006 - L1MC5 LINE L1 -181 7780 7688 2970 138 33 8 chr3 68854195 68854674 -149182484 - L1MB3 LINE L1 -1 6182 5692 2583 152 60 37 chr3 68854674 68855290 -149181868 + LTR1B LTR ERV1 16 826 0 740 142 89 0 chr3 68855290 68855430 -149181728 - L1MB3 LINE L1 -455 5707 5551 256 276 2 0 chr3 68855541 68855604 -149181554 + MIR SINE MIR 92 156 -52 2259 187 88 52 chr3 68855607 68856104 -149181054 + MLT2B2 LTR ERVL 1 515 0 249 57 0 0 chr3 68856311 68856346 -149180812 + (CA)n Simple_repeat Simple_repeat 2 36 0 476 196 0 20 chr3 68856511 68856613 -149180545 + MIR SINE MIR 162 261 -1 189 0 0 0 chr3 68858646 68858667 -149178491 + (A)n Simple_repeat Simple_repeat 1 21 0 333 0 0 0 chr3 68859195 68859232 -149177926 + (CA)n Simple_repeat Simple_repeat 1 37 0 2057 96 7 14 chr3 68859388 68859670 -149177488 - L1PB2 LINE L1 -2 6149 5870 384 325 45 0 chr3 68859675 68859829 -149177329 + MIR SINE MIR 12 172 -90 211 305 195 8 chr3 68860017 68860135 -149177023 - MIR SINE MIR -10 252 113 854 153 134 0 chr3 68860156 68860313 -149176845 - MSTC LTR MaLR -2 426 249 409 298 154 29 chr3 68860563 68860771 -149176387 + L2 LINE L2 3077 3310 -3 1497 186 30 30 chr3 68860891 68861187 -149175971 - AluJo SINE Alu -16 296 1 662 213 193 5 chr3 68861196 68861403 -149175755 - L1MD2 LINE L1 -1 6358 6113 30 0 0 0 chr3 68861665 68861695 -149175463 + AT_rich Low_complexity Low_complexity 1 30 0 2826 140 17 7 chr3 68861825 68862247 -149174911 - MSTA LTR MaLR -2 426 1 321 333 24 24 chr3 68862472 68862598 -149174560 - L3 LINE CR1 -24 1553 1428 400 291 78 17 chr3 68862675 68862854 -149174304 - MIR SINE MIR 0 262 73 1504 231 134 14 chr3 68862883 68863316 -149173842 - MLT1D LTR MaLR 0 505 21 263 259 26 95 chr3 68863434 68863550 -149173608 + L2 LINE L2 3163 3270 -2 486 297 151 10 chr3 68863550 68863742 -149173416 - L3 LINE CR1 -310 1267 1049 3320 144 2 42 chr3 68863745 68864299 -149172859 - MER34 LTR ERV1 0 542 11 29 0 0 0 chr3 68865083 68865112 -149172046 + AT_rich Low_complexity Low_complexity 1 29 0 213 154 0 0 chr3 68865409 68865448 -149171710 + CT-rich Low_complexity Low_complexity 2 40 0 346 215 117 117 chr3 68867020 68867234 -149169924 + MIR SINE MIR 21 234 -28 185 220 0 17 chr3 68867239 68867298 -149169860 + (TATATG)n Simple_repeat Simple_repeat 1 58 0 1874 138 25 4 chr3 68867411 68867716 -149169442 + AluSx SINE Alu 1 311 0 344 333 56 0 chr3 68871396 68871522 -149165636 - L2 LINE L2 0 3272 3140 390 21 0 0 chr3 68872748 68872795 -149164363 + (CA)n Simple_repeat Simple_repeat 2 48 0 196 264 54 126 chr3 68872844 68872866 -149164292 - L2 LINE L2 0 3313 3291 1972 183 6 0 chr3 68872866 68873210 -149163948 + MER7A DNA MER2_type 3 346 0 196 264 54 126 chr3 68873210 68873354 -149163804 - L2 LINE L2 -22 3291 3159 867 312 190 17 chr3 68873426 68874138 -149163020 + L2 LINE L2 1533 2367 -947 375 291 99 0 chr3 68874226 68874398 -149162760 - L1M4 LINE L1 -3275 2871 2683 1278 265 78 19 chr3 68874398 68874942 -149162216 + MLT1G1 LTR MaLR 1 487 -43 36355 43 5 2 chr3 68874968 68880500 -149156658 - L1PA3 LINE L1 -3 6152 607 1834 204 28 41 chr3 68930500 68930937 -149106221 - L1ME LINE L1 -458 5708 5278 1540 206 3 20 chr3 68930937 68931243 -149105915 - AluJo SINE Alu -11 301 1 243 88 0 0 chr3 68931245 68931279 -149105879 + (T)n Simple_repeat Simple_repeat 1 34 0 301 130 19 0 chr3 68931296 68931350 -149105808 - L1PB2 LINE L1 -1 6150 6096 2082 95 4 11 chr3 68931351 68931625 -149105533 - AluSg1 SINE Alu -9 300 29 674 143 0 0 chr3 68931725 68931816 -149105342 - AluJ/FLAM SINE Alu -217 95 5 2253 112 0 3 chr3 68931862 68932158 -149105000 + AluSx SINE Alu 1 295 -17 2082 158 58 60 chr3 68932454 68932922 -149104236 - MLT1C LTR MaLR 0 467 1 2767 234 95 20 chr3 68933079 68933178 -149103980 - L1ME LINE L1 -1066 5080 4990 2473 57 0 3 chr3 68933178 68933476 -149103682 + AluY SINE Alu 1 297 -14 2767 234 95 20 chr3 68933476 68934293 -149102865 - L1ME LINE L1 -1156 4990 4095 199 286 0 0 chr3 68934798 68934847 -149102311 - L2 LINE L2 -2 3311 3263 337 328 46 23 chr3 68936779 68936910 -149100248 - MIR3 SINE MIR -46 162 29 198 0 0 0 chr3 68936994 68937016 -149100142 + (TTA)n Simple_repeat Simple_repeat 3 24 0 2086 180 45 5 chr3 68937112 68937490 -149099668 - MSTD LTR MaLR 0 396 4 435 224 0 35 chr3 68937502 68937587 -149099571 + MER2 DNA MER2_type 8 89 -150 1806 170 64 37 chr3 68938848 68939224 -149097934 - MLT1C LTR MaLR 0 467 82 1835 137 11 18 chr3 68939384 68939661 -149097497 - AluSx SINE Alu -37 275 1 1675 198 0 3 chr3 68939699 68940007 -149097151 - AluJb SINE Alu -5 307 1 2126 196 23 34 chr3 68940240 68940289 -149096869 + MLT1F LTR MaLR 109 157 -385 2346 113 0 0 chr3 68940289 68940591 -149096567 - AluSx SINE Alu -10 302 1 2126 196 23 34 chr3 68940591 68940980 -149096178 + MLT1F LTR MaLR 157 542 0 198 102 20 41 chr3 68942054 68942103 -149095055 + (TCTCC)n Simple_repeat Simple_repeat 4 51 0 1825 164 50 130 chr3 68944066 68944452 -149092706 - L1MC4 LINE L1 -5 8037 7714 1746 166 7 14 chr3 68944452 68944764 -149092394 - AluJo SINE Alu 0 318 9 1825 164 50 130 chr3 68944764 68944990 -149092168 - L1MC4 LINE L1 -328 7714 7472 708 143 89 0 chr3 68945195 68945307 -149091851 - AluSg/x SINE Alu -12 298 177 1573 147 12 4 chr3 68945307 68945559 -149091599 - AluSx SINE Alu -58 254 1 798 180 65 30 chr3 68945803 68946003 -149091155 + MER58 DNA MER1_type 1 207 -2213 33 0 0 0 chr3 68946195 68946228 -149090930 + AT_rich Low_complexity Low_complexity 1 33 0 10623 191 21 17 chr3 68946230 68946577 -149090581 - L1P5 LINE L1 -676 5475 5131 2367 107 0 0 chr3 68946577 68946886 -149090272 - AluSg SINE Alu -1 309 1 10623 191 21 17 chr3 68946886 68948703 -149088455 - L1P5 LINE L1 -1020 5131 3301 2084 109 18 0 chr3 68948703 68948988 -149088170 - AluSq SINE Alu -23 290 1 10623 191 21 17 chr3 68948988 68949254 -149087904 - L1P5 LINE L1 -2850 3301 3037 832 164 0 0 chr3 68949258 68949386 -149087772 - AluSg/x SINE Alu -2 308 181 3019 193 71 158 chr3 68949487 68949976 -149087182 - L1MCa LINE L1 -2598 3828 3298 2087 139 3 3 chr3 68949976 68950285 -149086873 - AluSq SINE Alu -4 309 1 3019 193 71 158 chr3 68950285 68951237 -149085921 - L1MCa LINE L1 -3128 3298 2535 718 215 0 0 chr3 68951237 68951358 -149085800 - FLAM_C SINE Alu -10 123 3 3019 193 71 158 chr3 68951358 68951512 -149085646 - L1MCa LINE L1 -3891 2535 2369 359 171 13 0 chr3 68951821 68951897 -149085261 + (TGGA)n Simple_repeat Simple_repeat 2 78 0 24 53 0 0 chr3 68952272 68952310 -149084848 + AT_rich Low_complexity Low_complexity 1 38 0 2195 98 3 14 chr3 68952310 68952606 -149084552 + AluSx SINE Alu 1 293 -19 252 232 152 101 chr3 68952859 68952909 -149084249 - L1ME LINE L1 -343 5819 5773 1457 174 131 0 chr3 68952909 68953168 -149083990 + AluSq SINE Alu 2 294 -9 252 232 152 101 chr3 68953168 68953315 -149083843 - L1ME LINE L1 -389 5773 5612 2149 83 31 3 chr3 68954049 68954337 -149082821 - AluSp SINE Alu -16 297 2 306 164 0 0 chr3 68954681 68954736 -149082422 + CT-rich Low_complexity Low_complexity 2 56 0 311 320 39 39 chr3 68954829 68954982 -149082176 - MLT1K LTR MaLR -249 339 187 381 234 18 81 chr3 68955083 68955194 -149081964 + MER5A DNA MER1_type 9 112 -77 2130 102 0 43 chr3 68956383 68956687 -149080471 + AluSx SINE Alu 1 291 -21 882 188 101 72 chr3 68956752 68956801 -149080357 + AluJo SINE Alu 85 131 -181 2262 91 0 7 chr3 68956801 68957098 -149080060 + AluY SINE Alu 1 295 -16 882 188 101 72 chr3 68957098 68957256 -149079902 + AluJo SINE Alu 131 298 -14 252 268 147 19 chr3 68957419 68957576 -149079582 + MIR SINE MIR 86 262 0 342 67 0 0 chr3 68958134 68958179 -149078979 + (CA)n Simple_repeat Simple_repeat 2 46 0 1685 139 84 0 chr3 68958529 68958802 -149078356 + AluJb SINE Alu 6 301 -11 351 194 28 0 chr3 68959737 68959809 -149077349 - MER5A DNA MER1_type -106 83 10 1008 160 78 75 chr3 68959829 68960148 -149077010 - MER33 DNA MER1_type -4 320 1 180 340 0 0 chr3 68960311 68960364 -149076794 + MER5A DNA MER1_type 36 88 -101 2041 95 0 15 chr3 68960394 68960668 -149076490 - AluSg1 SINE Alu -39 270 1 1776 140 36 7 chr3 68960672 68960987 -149076171 - AluSq SINE Alu 0 323 1 382 260 10 0 chr3 68961125 68961229 -149075929 - L1MC5 LINE L1 -543 7418 7314 232 203 34 0 chr3 68961253 68961312 -149075846 - MER5B DNA MER1_type -1 177 117 1257 204 22 7 chr3 68961312 68961582 -149075576 + AluJo SINE Alu 1 274 -38 665 179 8 15 chr3 68961599 68961733 -149075425 - MER5B DNA MER1_type -45 133 1 595 294 40 50 chr3 68962024 68962498 -149074660 - MLT1K LTR MaLR -77 511 2 599 300 85 32 chr3 68962530 68962777 -149074381 - MIR SINE MIR 0 262 3 1525 254 141 24 chr3 68962796 68963307 -149073851 + MLT1E LTR MaLR 1 571 -22 228 354 41 49 chr3 68963316 68963562 -149073596 + L2 LINE L2 3028 3271 -1 370 233 92 17 chr3 68963849 68963969 -149073189 + MIR SINE MIR 25 153 -109 323 214 126 19 chr3 68964024 68964127 -149073031 + L2 LINE L2 3194 3307 -6 1992 75 0 119 chr3 68964734 68965069 -149072089 + AluSg SINE Alu 3 297 -3 31 68 0 0 chr3 68966101 68966160 -149070998 + GC_rich Low_complexity Low_complexity 1 59 0 23 54 0 0 chr3 68966497 68966534 -149070624 + GC_rich Low_complexity Low_complexity 1 37 0 1010 98 0 0 chr3 68968578 68968711 -149068447 - AluSc SINE Alu -176 133 1 349 63 2 109 chr3 68968979 68969057 -149068101 + Alu SINE Alu 247 302 0 1294 217 11 81 chr3 68969057 68969273 -149067885 + L1ME1 LINE L1 5815 5998 -168 1599 174 52 14 chr3 68969273 68969444 -149067714 - AluJo SINE Alu -10 302 114 214 29 57 0 chr3 68969444 68969479 -149067679 + (TG)n Simple_repeat Simple_repeat 2 38 0 1599 174 52 14 chr3 68969479 68969595 -149067563 - AluJo SINE Alu -198 114 4 1294 217 11 81 chr3 68969595 68969737 -149067421 + L1ME1 LINE L1 5998 6148 -18 793 267 13 49 chr3 68969764 68970153 -149067005 - MLT1K LTR MaLR -108 480 5 202 355 24 35 chr3 68970960 68971129 -149066029 + L2 LINE L2 2793 2959 -355 1134 122 17 6 chr3 68971130 68971311 -149065847 - MER20 DNA MER1_type 0 219 37 182 176 0 0 chr3 68971387 68971421 -149065737 + L2 LINE L2 3034 3067 -246 1840 131 35 3 chr3 68971447 68971730 -149065428 - AluSx SINE Alu -20 292 1 * 2037 122 16 10 chr3 68971730 68972032 -149065126 - AluSx SINE Alu -8 304 1 2261 102 0 34 chr3 68972044 68972367 -149064791 - AluSx SINE Alu 0 312 1 204 359 31 16 chr3 68972448 68972576 -149064582 + L2 LINE L2 3166 3295 -18 759 173 7 7 chr3 68972920 68973059 -149064099 - FLAM_C SINE Alu 0 143 5 1716 152 56 0 chr3 68973338 68973647 -149063511 - AluJo SINE Alu 0 324 1 2276 107 3 0 chr3 68974757 68975057 -149062101 + AluSq SINE Alu 1 301 -12 2230 103 0 13 chr3 68975381 68975683 -149061475 + AluSx SINE Alu 1 298 -14 318 215 13 13 chr3 68975865 68975944 -149061214 + MIR SINE MIR 86 164 -98 1429 186 0 4 chr3 68976085 68976322 -149060836 - AluJb SINE Alu -68 244 9 2085 92 0 62 chr3 68976476 68976609 -149060549 + AluSc SINE Alu 1 141 -173 2309 109 0 3 chr3 68976609 68976920 -149060238 + AluSg SINE Alu 1 310 0 2085 92 0 62 chr3 68976920 68977119 -149060039 + AluSc SINE Alu 141 314 0 271 336 77 7 chr3 68978060 68978203 -149058955 + MIR SINE MIR 110 262 0 583 283 23 6 chr3 68978213 68978386 -149058772 + MER104 DNA MER2_type 5 180 0 493 274 24 62 chr3 68979148 68979249 -149057909 + MIR SINE MIR 47 137 -125 1826 164 7 3 chr3 68979249 68979553 -149057605 + AluJo SINE Alu 1 305 -7 493 274 24 62 chr3 68979553 68979659 -149057499 + MIR SINE MIR 137 246 -16 201 268 70 0 chr3 68979674 68979745 -149057413 + L2 LINE L2 3232 3307 -6 252 308 120 14 chr3 68980006 68980214 -149056944 - L2 LINE L2 -1347 1967 1738 559 288 55 55 chr3 68980361 68980464 -149056694 + L1MC/D LINE L1 5346 5447 -681 1810 177 0 10 chr3 68980464 68980769 -149056389 - AluJo SINE Alu -10 302 1 559 288 55 55 chr3 68980769 68980990 -149056168 + L1MC/D LINE L1 5447 5660 -468 423 116 58 17 chr3 68981027 68981200 -149055958 + (TA)n Simple_repeat Simple_repeat 1 180 0 351 0 0 0 chr3 68981245 68981284 -149055874 + (TG)n Simple_repeat Simple_repeat 1 39 0 243 61 0 0 chr3 68981286 68981319 -149055839 + (GA)n Simple_repeat Simple_repeat 2 34 0 382 247 82 10 chr3 68983665 68983762 -149053396 + MER81 DNA DNA 11 114 0 2048 131 7 7 chr3 68984949 68985247 -149051911 + AluSg SINE Alu 1 298 -12 918 138 0 0 chr3 68985396 68985529 -149051629 + AluSg/x SINE Alu 164 296 -16 180 0 0 0 chr3 68985529 68985549 -149051609 + (TA)n Simple_repeat Simple_repeat 2 21 0 * 225 0 0 0 chr3 68985548 68985573 -149051585 + (TG)n Simple_repeat Simple_repeat 2 26 0 918 138 0 0 chr3 68985549 68985577 -149051581 + AluSg/x SINE Alu 295 301 -11 1779 192 0 10 chr3 68985886 68986198 -149050960 - AluJb SINE Alu -3 309 1 1889 151 0 3 chr3 68986330 68986644 -149050514 + AluSx SINE Alu 1 313 0 438 271 162 53 chr3 68986965 68987249 -149049909 - L2 LINE L2 -1 3312 2998 24 0 0 0 chr3 68987509 68987533 -149049625 + AT_rich Low_complexity Low_complexity 1 24 0 1532 213 78 23 chr3 68988132 68988527 -149048631 - MER63B DNA MER1_type -19 417 1 2089 173 16 71 chr3 68988544 68988560 -149048598 - MLT1C LTR MaLR -6 461 446 1696 169 172 5 chr3 68988560 68988927 -149048231 + MSTA LTR MaLR 1 428 0 2089 173 16 71 chr3 68988927 68989361 -149047797 - MLT1C LTR MaLR -21 446 36 2062 126 3 0 chr3 68989414 68989700 -149047458 + AluSx SINE Alu 15 301 -11 346 303 109 11 chr3 68989869 68990044 -149047114 - MIR SINE MIR -24 238 47 2174 138 0 3 chr3 68990609 68990914 -149046244 - AluSx SINE Alu -8 304 1 1754 187 3 16 chr3 68990916 68991231 -149045927 - AluJo SINE Alu -1 311 1 2138 207 81 8 chr3 68991376 68991845 -149045313 - MLT1E1 LTR MaLR 0 654 152 1105 203 77 34 chr3 68991907 68992262 -149044896 - MLT1A1 LTR MaLR 0 428 1 353 302 50 59 chr3 68993125 68993466 -149043692 - MER102b DNA MER1_type -3 338 1 528 247 102 46 chr3 68993836 68994076 -149043082 + MLT1L LTR MaLR 292 563 -40 238 211 179 21 chr3 68994268 68994363 -149042795 + MER117 DNA MER1_type 84 193 -4 280 289 66 8 chr3 68994507 68994628 -149042530 + MIR SINE MIR 97 224 -38 1609 178 56 11 chr3 68994933 68995219 -149041939 + AluJb SINE Alu 1 299 -13 765 209 87 43 chr3 68995397 68995627 -149041531 + MIR SINE MIR 2 241 -21 1789 113 0 4 chr3 68995840 68996078 -149041080 - AluSx SINE Alu -75 237 1 2288 104 33 36 chr3 68996239 68996604 -149040554 + THE1B LTR MaLR 1 364 0 235 282 42 0 chr3 68996884 68996955 -149040203 + LTR37B LTR ERV1 1 74 -394 264 261 14 0 chr3 68997052 68997121 -149040037 + LTR37B LTR ERV1 199 268 -200 29 78 0 0 chr3 68997135 68997199 -149039959 + AT_rich Low_complexity Low_complexity 1 64 0 1387 161 51 72 chr3 68997199 68997358 -149039800 - AluJo SINE Alu -26 286 134 2052 114 3 3 chr3 68997358 68997647 -149039511 + AluY SINE Alu 1 289 -22 1387 161 51 72 chr3 68997647 68997779 -149039379 - AluJo SINE Alu -178 134 1 486 209 0 0 chr3 68997785 68997876 -149039282 - L1MB5 LINE L1 -39 6135 6045 264 163 0 0 chr3 68997887 68997930 -149039228 - L1MB5 LINE L1 -87 6087 6045 4527 173 38 31 chr3 68997932 68999445 -149037713 - L1MB5 LINE L1 -77 6097 4575 609 239 78 37 chr3 68999446 68999508 -149037650 + LTR37B LTR ERV1 242 300 -168 207 100 0 0 chr3 68999508 68999538 -149037620 + (TA)n Simple_repeat Simple_repeat 2 31 0 2309 81 3 0 chr3 68999538 68999821 -149037337 - AluY SINE Alu -27 284 1 609 239 78 37 chr3 68999821 68999975 -149037183 + LTR37B LTR ERV1 299 468 0 709 222 53 18 chr3 68999999 69000170 -149036988 - MER5B DNA MER1_type -1 177 1 2650 119 49 5 chr3 69000587 69000997 -149036161 - MSTA LTR MaLR 0 428 1 722 281 84 4 chr3 69001254 69001492 -149035666 + MIR SINE MIR 3 259 -3 2403 87 0 0 chr3 69001556 69001854 -149035304 - AluY SINE Alu -13 298 1 2094 132 3 0 chr3 69002197 69002513 -149034645 - AluSx SINE Alu 0 317 1 726 181 8 8 chr3 69003055 69003182 -149033976 + FLAM_A SINE Alu 1 127 -6 236 219 0 0 chr3 69003188 69003229 -149033929 - MLT1L LTR MaLR -574 41 1 24 91 0 0 chr3 69003785 69003851 -149033307 + AT_rich Low_complexity Low_complexity 1 66 0 3309 260 64 15 chr3 69004801 69006038 -149031120 + L1M4 LINE L1 2469 3766 -2380 1988 85 0 0 chr3 69006075 69006321 -149030837 + AluSq SINE Alu 49 294 -19 219 36 0 0 chr3 69006325 69006353 -149030805 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2782 184 96 108 chr3 69006362 69007139 -149030019 + L1MDb LINE L1 640 1406 -5137 711 212 0 0 chr3 69007139 69007271 -149029887 + FLAM_C SINE Alu 1 132 -1 2782 184 96 108 chr3 69007271 69007421 -149029737 + L1MDb LINE L1 1406 1556 -4987 913 227 162 8 chr3 69007547 69007831 -149029327 + L1MDb LINE L1 1972 2322 -4218 2570 70 0 3 chr3 69007831 69008145 -149029013 + AluSq SINE Alu 1 313 0 913 227 162 8 chr3 69008145 69008212 -149028946 + L1MDb LINE L1 2322 2377 -4163 2612 138 17 17 chr3 69008213 69008580 -149028578 - Tigger2a DNA MER2_type -2285 423 54 2311 155 41 9 chr3 69008580 69008999 -149028159 - MSTB1 LTR MaLR 0 432 1 2612 138 17 17 chr3 69008999 69009038 -149028120 - Tigger2a DNA MER2_type -2653 55 17 368 179 57 0 chr3 69009064 69009170 -149027988 + L1MDb LINE L1 2384 2495 -4045 17846 184 93 16 chr3 69009174 69010939 -149026219 + L1P4 LINE L1 7 1636 -5965 2254 123 0 0 chr3 69010939 69011241 -149025917 + AluSx SINE Alu 1 302 -10 17846 184 93 16 chr3 69011241 69012060 -149025098 + L1P4 LINE L1 1636 2391 -5210 1920 130 4 4 chr3 69012060 69012337 -149024821 + AluSx SINE Alu 1 277 -35 279 0 0 0 chr3 69012338 69012369 -149024789 + (CA)n Simple_repeat Simple_repeat 2 32 0 17846 184 93 16 chr3 69012369 69015292 -149021866 + L1P4 LINE L1 2390 7008 -593 300 190 254 49 chr3 69016678 69016820 -149020338 - L1MC5 LINE L1 -63 7898 7728 1884 139 4 0 chr3 69017816 69018089 -149019069 - AluSx SINE Alu -15 297 24 1599 164 52 11 chr3 69018703 69018990 -149018168 + AluJo SINE Alu 3 301 -11 1802 143 63 3 chr3 69019007 69019293 -149017865 + AluJo SINE Alu 1 303 -9 2294 101 0 3 chr3 69019936 69020232 -149016926 + AluSc SINE Alu 1 295 -14 851 211 97 31 chr3 69020542 69020769 -149016389 + MIR SINE MIR 6 247 -15 830 156 0 50 chr3 69020786 69020927 -149016231 - AluJo SINE Alu -177 135 2 206 212 222 50 chr3 69022317 69022416 -149014742 + MIR SINE MIR 47 162 -100 * 281 290 183 18 chr3 69022404 69022573 -149014585 - MIR SINE MIR -1 261 65 196 276 216 17 chr3 69023200 69023316 -149013842 + MIR3 SINE MIR 70 208 0 23 33 0 0 chr3 69023826 69023856 -149013302 + AT_rich Low_complexity Low_complexity 1 30 0 421 228 26 26 chr3 69023883 69023997 -149013161 - L2 LINE L2 0 3313 3200 281 305 19 29 chr3 69024010 69024115 -149013043 + Charlie8 DNA MER1_type 132 235 -2182 2641 158 21 9 chr3 69025948 69026385 -149010773 - MSTB2 LTR MaLR -1 456 15 495 296 118 0 chr3 69026736 69026905 -149010253 + MIR SINE MIR 45 233 -29 1964 116 9 56 chr3 69026908 69027227 -149009931 - AluSx SINE Alu -8 304 1 209 255 63 33 chr3 69027347 69027448 -149009710 - MIR SINE MIR -93 115 13 183 42 0 0 chr3 69027497 69027521 -149009637 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 292 323 0 21 chr3 69027814 69027907 -149009251 - MER117 DNA MER1_type -36 161 71 1469 158 51 44 chr3 69028681 69029016 -149008142 + MER33 DNA MER1_type 1 324 0 503 241 43 31 chr3 69029224 69029386 -149007772 + MIR SINE MIR 99 262 0 315 283 100 17 chr3 69030836 69030956 -149006202 - MIR SINE MIR -113 149 20 1197 153 39 10 chr3 69031178 69031381 -149005777 + Tigger2 DNA MER2_type 1 209 -2509 701 164 23 129 chr3 69031382 69031475 -149005683 + Tigger2 DNA MER2_type 2565 2633 -85 743 168 30 15 chr3 69031475 69031606 -149005552 + FLAM_A SINE Alu 1 133 0 701 164 23 129 chr3 69031606 69031683 -149005475 + Tigger2 DNA MER2_type 2633 2717 -1 1590 99 178 4 chr3 69031692 69031945 -149005213 - AluSg1 SINE Alu -12 297 1 2211 112 7 0 chr3 69032909 69033204 -149003954 - AluSx SINE Alu -2 310 14 1841 154 0 3 chr3 69033251 69033576 -149003582 - AluJb SINE Alu 0 324 1 274 264 109 36 chr3 69034686 69034796 -149002362 + MIR SINE MIR 111 228 -34 21 0 0 0 chr3 69035551 69035572 -149001586 + AT_rich Low_complexity Low_complexity 1 21 0 384 261 219 0 chr3 69036083 69036202 -149000956 + MER5A DNA MER1_type 44 188 -1 2180 135 0 0 chr3 69036305 69036617 -149000541 + AluSx SINE Alu 1 312 0 1367 154 4 9 chr3 69036773 69037000 -149000158 + AluJo SINE Alu 6 231 -81 402 167 0 0 chr3 69037376 69037460 -148999698 + CT-rich Low_complexity Low_complexity 3 86 0 1512 168 30 11 chr3 69037480 69037742 -148999416 - AluSq SINE Alu -44 269 3 372 325 63 24 chr3 69037806 69038012 -148999146 + MIR SINE MIR 11 224 -38 1308 216 54 3 chr3 69038270 69038567 -148998591 - MER58B DNA MER1_type 0 341 30 2157 113 0 10 chr3 69038586 69038888 -148998270 - AluSx SINE Alu -13 299 1 270 0 0 0 chr3 69039502 69039532 -148997626 + (TG)n Simple_repeat Simple_repeat 1 30 0 391 331 14 28 chr3 69040560 69040705 -148996453 + L2 LINE L2 2507 2649 -665 686 235 20 7 chr3 69040895 69041044 -148996114 + MIR SINE MIR 6 156 -106 1859 143 31 10 chr3 69041061 69041354 -148995804 - AluJb SINE Alu -13 299 1 181 288 9 63 chr3 69041359 69041470 -148995688 + MIR SINE MIR 150 254 -8 190 322 68 25 chr3 69041513 69041631 -148995527 + L2 LINE L2 2972 3094 -219 1482 202 199 54 chr3 69041687 69042593 -148994565 - L1MC4 LINE L1 -104 7704 6667 2112 120 3 3 chr3 69042593 69042894 -148994264 - AluSx SINE Alu -11 301 1 1482 202 199 54 chr3 69042894 69043161 -148993997 - L1MC4 LINE L1 -1141 6667 6440 443 321 123 19 chr3 69043285 69043447 -148993711 - MER91A DNA MER1_type -17 179 1 267 264 91 18 chr3 69043763 69043873 -148993285 - MLT1H LTR MaLR -392 157 40 28 0 0 0 chr3 69044895 69044923 -148992235 + AT_rich Low_complexity Low_complexity 1 28 0 1845 146 0 54 chr3 69045502 69045818 -148991340 + AluJb SINE Alu 1 299 -13 1050 195 13 53 chr3 69045983 69046209 -148990949 + MER20 DNA MER1_type 1 217 -2 2183 116 0 3 chr3 69047270 69047571 -148989587 - AluSq SINE Alu -13 300 1 315 161 0 0 chr3 69047665 69047721 -148989437 + (TG)n Simple_repeat Simple_repeat 2 57 0 210 260 0 52 chr3 69048182 69048259 -148988899 + CT-rich Low_complexity Low_complexity 3 75 0 191 324 66 33 chr3 69048420 69048602 -148988556 + MIR SINE MIR 75 262 0 327 278 24 71 chr3 69051119 69051245 -148985913 + MIR SINE MIR 2 121 -141 412 278 135 45 chr3 69051262 69051528 -148985630 + MLT1J LTR MaLR 28 317 -194 247 140 35 35 chr3 69051578 69051635 -148985523 + MLT1L LTR MaLR 509 565 -50 416 255 47 0 chr3 69051670 69051776 -148985382 + MIR SINE MIR 118 228 -34 2018 170 2 82 chr3 69051827 69052251 -148984907 - MLT1B LTR MaLR 0 390 1 984 230 97 50 chr3 69053812 69054378 -148982780 + L1MC5 LINE L1 7274 7866 -95 180 348 22 33 chr3 69055108 69055200 -148981958 - L2 LINE L2 -2 3270 3180 2149 109 3 55 chr3 69055302 69055631 -148981527 - AluSx SINE Alu 0 312 1 237 333 125 6 chr3 69055784 69055952 -148981206 - MIR SINE MIR -70 192 5 2162 125 0 3 chr3 69056155 69056451 -148980707 - AluSg SINE Alu -15 295 1 2355 95 0 0 chr3 69057772 69058077 -148979081 + AluSg SINE Alu 1 305 -5 1858 176 21 18 chr3 69058274 69058603 -148978555 + MER44D DNA MER2_type 1 600 -9 251 376 43 0 chr3 69058812 69058905 -148978253 - L2 LINE L2 -55 3217 3121 1888 145 0 14 chr3 69059019 69059302 -148977856 + AluJb SINE Alu 1 279 -33 237 65 0 0 chr3 69059303 69059334 -148977824 + (CA)n Simple_repeat Simple_repeat 2 32 0 312 119 0 0 chr3 69059528 69059570 -148977588 - 5S rRNA rRNA -79 42 1 807 292 116 34 chr3 69059939 69060326 -148976832 + L2 LINE L2 2894 3312 -1 1970 193 2 37 chr3 69060461 69060891 -148976267 - L1M4 LINE L1 -1774 4372 3958 1532 161 0 19 chr3 69060895 69061162 -148975996 - AluSx SINE Alu 0 312 51 252 91 0 0 chr3 69061203 69061236 -148975922 - AluSx SINE Alu -259 43 11 2016 100 7 17 chr3 69061246 69061535 -148975623 - AluSg SINE Alu -24 286 1 227 128 0 43 chr3 69061551 69061598 -148975560 - L1M4 LINE L1 -2191 3955 3911 47 0 0 17 chr3 69062324 69062370 -148974788 + AT_rich Low_complexity Low_complexity 1 47 -10 1756 161 40 7 chr3 69062370 69062643 -148974515 - AluJb SINE Alu -30 282 1 47 0 0 17 chr3 69062643 69062654 -148974504 + AT_rich Low_complexity Low_complexity 47 57 0 225 276 142 60 chr3 69062654 69062788 -148974370 - MIR SINE MIR -105 157 13 303 330 0 21 chr3 69062958 69063052 -148974106 - L3 LINE CR1 -89 1488 1397 1335 177 154 10 chr3 69063177 69063482 -148973676 - L1MB8 LINE L1 -5 6173 5825 1070 77 0 0 chr3 69063488 69063618 -148973540 - AluSp SINE Alu -183 130 1 722 171 18 41 chr3 69063622 69063792 -148973366 - L1MB8 LINE L1 -347 5837 5672 394 312 74 14 chr3 69063808 69064023 -148973135 - L3 LINE CR1 -710 867 640 464 282 44 48 chr3 69064258 69064464 -148972694 + MIR SINE MIR 37 241 -21 1063 134 16 82 chr3 69065540 69065734 -148971424 - AluJb SINE Alu -131 181 1 5550 202 26 8 chr3 69065740 69066972 -148970186 - L1MB8 LINE L1 -818 5328 4075 216 97 0 0 chr3 69067401 69067432 -148969726 + (TCC)n Simple_repeat Simple_repeat 3 33 0 313 302 69 38 chr3 69067466 69067625 -148969533 - MIR SINE MIR -37 225 62 211 310 0 0 chr3 69068174 69068232 -148968926 + C-rich Low_complexity Low_complexity 6 63 0 431 239 64 9 chr3 69068234 69068343 -148968815 - L2 LINE L2 -15 3298 3184 685 199 128 57 chr3 69069801 69070152 -148967006 + L1MC5 LINE L1 7154 7529 -432 502 221 0 0 chr3 69070159 69070254 -148966904 + FLAM_A SINE Alu 20 114 -28 312 83 0 0 chr3 69070257 69070305 -148966853 + (GA)n Simple_repeat Simple_repeat 1 48 0 368 251 89 28 chr3 69070306 69070485 -148966673 + L1MC5 LINE L1 7510 7699 -262 1982 106 63 7 chr3 69070494 69070778 -148966380 + AluSx SINE Alu 1 300 -12 444 235 0 0 chr3 69072404 69072485 -148964673 + LTR67 LTR ERVL 115 195 -362 997 244 42 0 chr3 69072625 69072838 -148964320 - MER58A DNA MER1_type 0 224 3 324 218 40 50 chr3 69072841 69072942 -148964216 + LTR67 LTR ERVL 442 541 -16 1840 152 0 20 chr3 69073105 69073408 -148963750 - AluJb SINE Alu -15 297 1 3132 176 96 44 chr3 69073503 69074189 -148962969 - L1MD2 LINE L1 -67 6292 5571 301 300 42 17 chr3 69074309 69074429 -148962729 - MIR SINE MIR -26 236 114 2583 53 0 7 chr3 69074503 69074806 -148962352 + AluY SINE Alu 1 301 -10 274 181 14 14 chr3 69076107 69076179 -148960979 + CT-rich Low_complexity Low_complexity 2 73 0 792 197 0 0 chr3 69076181 69076313 -148960845 - FLAM_C SINE Alu 0 133 2 928 191 75 121 chr3 69076316 69076662 -148960496 - MLT1A2 LTR MaLR -44 330 1 2149 120 0 0 chr3 69078722 69079006 -148958152 + AluSx SINE Alu 1 284 -28 2158 123 7 0 chr3 69079022 69079323 -148957835 + AluSg1 SINE Alu 1 303 -6 738 209 92 34 chr3 69079658 69079864 -148957294 - MER20 DNA MER1_type 0 219 2 317 230 58 35 chr3 69080516 69080603 -148956555 - L2 LINE L2 -34 3279 3191 193 227 23 0 chr3 69081058 69081102 -148956056 + MIR SINE MIR 86 130 -132 369 154 0 0 chr3 69081303 69081368 -148955790 - L1M4 LINE L1 -3642 2504 2440 2036 153 0 3 chr3 69081372 69081680 -148955478 - AluSx SINE Alu -5 307 1 2446 81 0 16 chr3 69081771 69082081 -148955077 - AluSx SINE Alu -7 305 1 228 354 10 10 chr3 69082376 69082472 -148954686 + L2 LINE L2 3173 3268 -4 1283 193 7 44 chr3 69082590 69082864 -148954294 - AluJo SINE Alu -10 302 39 1497 177 3 66 chr3 69082925 69083258 -148953900 + AluJo SINE Alu 1 312 0 280 270 126 27 chr3 69083814 69083925 -148953233 - L2 LINE L2 -1 3312 3191 1253 202 114 60 chr3 69083931 69084407 -148952751 - MER39 LTR ERV1 0 707 90 832 143 7 45 chr3 69084409 69084563 -148952595 + AluJo SINE Alu 65 212 -100 258 282 45 36 chr3 69085403 69085513 -148951645 + MIR SINE MIR 37 147 -115 272 307 161 5 chr3 69085550 69085755 -148951403 + L2 LINE L2 3077 3313 0 365 279 16 33 chr3 69086619 69086741 -148950417 + MER117 DNA MER1_type 12 131 -66 2359 99 0 0 chr3 69086939 69087242 -148949916 + AluSc SINE Alu 1 303 -6 433 263 112 34 chr3 69087446 69087651 -148949507 + MIR SINE MIR 6 226 -36 1290 109 6 6 chr3 69087714 69087889 -148949269 + AluSx SINE Alu 1 175 -137 188 344 0 43 chr3 69088390 69088483 -148948675 - MIR SINE MIR -115 147 59 830 315 26 12 chr3 69088658 69089004 -148948154 + L1MC4a LINE L1 5495 5845 -1963 951 174 0 143 chr3 69090332 69090590 -148946568 - MER58A DNA MER1_type -3 221 1 669 148 7 78 chr3 69090652 69090794 -148946364 - FLAM_A SINE Alu -1 141 10 428 270 35 63 chr3 69090802 69090976 -148946182 + MIR SINE MIR 67 235 -27 571 167 78 150 chr3 69091643 69091823 -148945335 + MER20 DNA MER1_type 53 219 0 247 301 29 44 chr3 69091879 69092015 -148945143 - MIR SINE MIR -64 198 65 1429 201 3 21 chr3 69092623 69092906 -148944252 - AluJo SINE Alu -21 291 14 315 0 0 0 chr3 69092957 69092992 -148944166 + (TG)n Simple_repeat Simple_repeat 2 36 0 25 0 0 0 chr3 69093255 69093280 -148943878 + AT_rich Low_complexity Low_complexity 1 25 0 1889 219 158 2 chr3 69093488 69093977 -148943181 + MLT1F1 LTR MaLR 3 567 0 912 147 15 0 chr3 69094360 69094496 -148942662 + AluJb SINE Alu 1 138 -174 182 62 31 0 chr3 69094516 69094548 -148942610 + (TAAAAA)n Simple_repeat Simple_repeat 3 35 0 326 273 102 39 chr3 69094589 69094717 -148942441 + L2 LINE L2 3137 3272 0 328 336 75 0 chr3 69094726 69094847 -148942311 + MIR SINE MIR 82 217 -45 3213 129 82 4 chr3 69094847 69095336 -148941822 - MER1A DNA MER1_type 0 527 1 328 336 75 0 chr3 69095336 69095360 -148941798 + MIR SINE MIR 217 238 -24 1899 151 10 6 chr3 69095908 69096219 -148940939 + AluJb SINE Alu 1 312 0 283 259 109 54 chr3 69096971 69097118 -148940040 + MIR SINE MIR 14 168 -94 5927 20 0 3 chr3 69098165 69098798 -148938360 - SVA Other Other 0 1386 756 1889 147 21 0 chr3 69103007 69103293 -148933865 + AluJo SINE Alu 5 296 -16 6011 73 23 20 chr3 69103839 69104828 -148932330 - SVA Other Other -520 866 1 423 98 0 0 chr3 69104831 69104892 -148932266 + (GGGAGA)n Simple_repeat Simple_repeat 3 63 0 1599 155 16 35 chr3 69104931 69105248 -148931910 + AluJb SINE Alu 1 311 -1 648 231 0 14 chr3 69105657 69105804 -148931354 - L1PB4 LINE L1 -6 6150 6006 2457 60 36 3 chr3 69105911 69106245 -148930913 + L1PA7 LINE L1 5810 6154 0 1099 109 0 0 chr3 69106418 69106565 -148930593 + AluSg/x SINE Alu 160 306 -6 285 253 82 82 chr3 69107703 69107873 -148929285 + L1MC5 LINE L1 7744 7913 -48 2540 66 0 0 chr3 69108233 69108534 -148928624 + AluY SINE Alu 4 304 -7 183 42 0 0 chr3 69108603 69108627 -148928531 + (CA)n Simple_repeat Simple_repeat 1 24 0 2462 86 0 0 chr3 69109020 69109323 -148927835 + AluSg SINE Alu 1 303 -7 312 302 18 59 chr3 69109344 69109513 -148927645 - MIR SINE MIR -24 238 77 1952 146 19 10 chr3 69111558 69111866 -148925292 + AluSx SINE Alu 1 311 -1 398 237 0 11 chr3 69112231 69112324 -148924834 - MER94 DNA DNA -41 93 2 234 91 0 0 chr3 69113110 69113143 -148924015 + (A)n Simple_repeat Simple_repeat 1 33 0 350 313 46 0 chr3 69113664 69113795 -148923363 + MIR SINE MIR 125 261 -1 2131 123 3 3 chr3 69113923 69114223 -148922935 + AluSx SINE Alu 1 300 -12 857 236 62 11 chr3 69114248 69114524 -148922634 + L1MC4 LINE L1 7705 7994 -48 216 235 108 49 chr3 69116916 69117018 -148920140 + MIR SINE MIR 2 109 -153 335 319 0 0 chr3 69117048 69117142 -148920016 + CT-rich Low_complexity Low_complexity 3 96 0 275 253 25 13 chr3 69117159 69117238 -148919920 + MIR SINE MIR 156 235 -27 2120 125 0 7 chr3 69117542 69117845 -148919313 + AluSx SINE Alu 1 301 -11 180 229 115 0 chr3 69118060 69118121 -148919037 - L2 LINE L2 -469 2845 2778 858 311 47 36 chr3 69118152 69118622 -148918536 + L1MC4a LINE L1 5421 5895 -1913 186 118 0 0 chr3 69118679 69118713 -148918445 + (TC)n Simple_repeat Simple_repeat 1 34 0 2391 101 0 0 chr3 69118821 69119128 -148918030 - AluSq SINE Alu -5 308 2 194 247 49 37 chr3 69119287 69119368 -148917790 + MIR3 SINE MIR 111 192 -16 2130 135 0 0 chr3 69120038 69120342 -148916816 + AluSq SINE Alu 1 304 -9 338 314 44 44 chr3 69120653 69120812 -148916346 + MIR SINE MIR 29 187 -75 326 252 202 25 chr3 69120815 69120934 -148916224 + MER34 LTR ERV1 1 140 -402 * 1462 194 118 65 chr3 69120905 69121064 -148916094 + MER39 LTR ERV1 218 367 -340 2926 160 181 24 chr3 69121064 69121744 -148915414 + LTR48 LTR ERV1 1 787 0 1462 194 118 65 chr3 69121744 69122049 -148915109 + MER39 LTR ERV1 367 707 0 1097 187 30 0 chr3 69122116 69122319 -148914839 - MER58A DNA MER1_type -15 209 1 342 267 69 20 chr3 69122299 69122400 -148914758 - MER58A DNA MER1_type 0 107 2 * 1385 134 23 145 chr3 69122406 69122621 -148914537 - Charlie1 DNA MER1_type 0 2761 2521 3344 34 0 3 chr3 69122621 69122999 -148914159 + L1PA4 LINE L1 5776 6152 -3 1385 134 23 145 chr3 69122999 69123289 -148913869 - Charlie1 DNA MER1_type -240 2521 5 1491 176 40 7 chr3 69125434 69125712 -148911446 + AluJb SINE Alu 1 287 -25 235 120 20 20 chr3 69125734 69125784 -148911374 + GA-rich Low_complexity Low_complexity 4 53 0 2173 123 0 0 chr3 69125796 69126097 -148911061 - AluSx SINE Alu -11 301 1 259 259 50 72 chr3 69126109 69126248 -148910910 - MIR SINE MIR -29 233 98 985 239 150 40 chr3 69126363 69126810 -148910348 - L1ME3 LINE L1 -26 6136 5641 231 246 101 14 chr3 69127384 69127453 -148909705 + MIR SINE MIR 74 148 -60 186 363 88 0 chr3 69127794 69127885 -148909273 - L2 LINE L2 -20 3252 3154 396 214 41 0 chr3 69128026 69128124 -148909034 + MIR SINE MIR 92 193 -69 320 137 260 14 chr3 69128129 69128202 -148908956 - MER20 DNA MER1_type 0 219 129 455 133 189 11 chr3 69128309 69128399 -148908759 - MER20 DNA MER1_type -98 121 16 2372 77 13 3 chr3 69130311 69130609 -148906549 - AluSx SINE Alu -11 301 1 24 0 0 0 chr3 69130611 69130635 -148906523 + AT_rich Low_complexity Low_complexity 1 24 0 338 283 101 64 chr3 69130833 69131079 -148906079 - L1MC4a LINE L1 -1925 5883 5648 1925 211 72 28 chr3 69131079 69131577 -148905581 - MLT2B1 LTR ERVL 0 520 1 338 283 101 64 chr3 69131577 69131590 -148905568 - L1MC4a LINE L1 -2160 5648 5637 1936 155 0 25 chr3 69131590 69131906 -148905252 - AluJb SINE Alu -2 310 3 338 283 101 64 chr3 69131906 69132020 -148905138 - L1MC4a LINE L1 -2171 5637 5495 2273 70 22 35 chr3 69132263 69132576 -148904582 - AluY SINE Alu -2 309 1 278 250 129 26 chr3 69132911 69133027 -148904131 - MIR SINE MIR -74 188 61 2089 148 0 0 chr3 69133124 69133434 -148903724 - AluSx SINE Alu -2 310 1 332 198 161 0 chr3 69133456 69133537 -148903621 + MER58 DNA MER1_type 2318 2411 -9 202 194 0 0 chr3 69133617 69133653 -148903505 - MER5A DNA MER1_type 0 189 154 696 204 167 0 chr3 69133658 69133820 -148903338 - MER5A DNA MER1_type 0 189 1 468 299 21 26 chr3 69134120 69134314 -148902844 - MIR SINE MIR -1 261 69 1679 93 26 9 chr3 69134326 69134552 -148902606 - MER30 DNA MER1_type 0 230 1 6715 63 4 0 chr3 69134591 69135435 -148901723 - L1PA7 LINE L1 0 6154 5308 987 80 22 0 chr3 69135425 69135562 -148901596 + L1PA7 LINE L1 5156 5295 -851 * 2485 80 0 0 chr3 69135713 69136013 -148901145 - AluSq SINE Alu -13 300 1 24 77 0 0 chr3 69136055 69136107 -148901051 + AT_rich Low_complexity Low_complexity 1 52 0 2154 113 66 30 chr3 69136223 69136585 -148900573 + THE1C LTR MaLR 1 375 0 2216 86 3 40 chr3 69136984 69137288 -148899870 - AluSg SINE Alu -15 295 3 238 259 35 95 chr3 69137295 69137411 -148899747 - L2 LINE L2 -11 3302 3194 221 262 0 0 chr3 69137844 69137886 -148899272 + MIR3 SINE MIR 139 180 -28 845 249 199 10 chr3 69138042 69138339 -148898819 + MLT1J LTR MaLR 7 359 -152 226 330 44 33 chr3 69138353 69138444 -148898714 + MER91A DNA MER1_type 16 107 -89 235 341 98 0 chr3 69138491 69138573 -148898585 + MER91A DNA MER1_type 93 182 -14 305 260 13 93 chr3 69138581 69138731 -148898427 + MLT1J LTR MaLR 374 511 0 186 103 0 0 chr3 69138989 69139018 -148898140 + (T)n Simple_repeat Simple_repeat 1 29 0 1833 141 10 20 chr3 69139032 69139338 -148897820 - AluJb SINE Alu -9 303 1 2171 119 0 3 chr3 69140510 69140813 -148896345 + AluSg SINE Alu 1 302 -8 408 164 14 0 chr3 69141102 69141175 -148895983 - MIR SINE MIR -78 184 111 2169 118 0 10 chr3 69141325 69141629 -148895529 + AluSc SINE Alu 1 301 -8 2019 138 10 6 chr3 69141718 69142029 -148895129 + AluSx SINE Alu 1 312 0 646 251 83 54 chr3 69143588 69143938 -148893220 + L2 LINE L2 2859 3218 -95 2043 129 0 20 chr3 69143941 69144243 -148892915 - AluSx SINE Alu -16 296 1 714 226 90 14 chr3 69144251 69144463 -148892695 - L1ME3A LINE L1 0 6170 5943 189 154 0 26 chr3 69144463 69144502 -148892656 + L2 LINE L2 3209 3246 -67 371 319 28 21 chr3 69145204 69145348 -148891810 + MER91B DNA MER1_type 41 185 -5 344 257 101 39 chr3 69145555 69145734 -148891424 - MLT1L LTR MaLR 0 615 426 1815 199 90 11 chr3 69145849 69146042 -148891116 - MSTD LTR MaLR 0 396 220 219 69 0 0 chr3 69146042 69146071 -148891087 + (CA)n Simple_repeat Simple_repeat 2 30 0 1815 199 90 11 chr3 69146071 69146244 -148890914 - MSTD LTR MaLR -176 220 1 3216 224 67 67 chr3 69147395 69147769 -148889389 - L1MC3 LINE L1 0 7785 7413 1903 124 60 7 chr3 69147769 69148052 -148889106 + AluSx SINE Alu 1 298 -14 3216 224 67 67 chr3 69148052 69148982 -148888176 - L1MC3 LINE L1 -372 7413 4964 1051 151 245 5 chr3 69148998 69149210 -148887948 - AluJb SINE Alu -22 290 28 1275 190 8 11 chr3 69149234 69149497 -148887661 - L1MC3 LINE L1 -1199 4947 4686 2470 64 0 0 chr3 69150586 69150883 -148886275 + AluY SINE Alu 1 297 -14 1145 149 257 25 chr3 69151031 69151272 -148885886 - AluSx SINE Alu -5 297 1 1096 235 86 29 chr3 69151276 69151650 -148885508 - LTR37B LTR ERV1 -16 452 58 180 236 9 136 chr3 69152063 69152126 -148885032 + MIR SINE MIR 153 198 -64 1851 158 3 16 chr3 69152126 69152429 -148884729 + AluJo SINE Alu 7 305 -7 180 236 9 136 chr3 69152429 69152475 -148884683 + MIR SINE MIR 198 248 -14 1310 205 0 82 chr3 69152578 69152909 -148884249 + AluJb SINE Alu 4 309 0 241 326 89 11 chr3 69153018 69153208 -148883950 - Charlie8 DNA MER1_type -2153 264 60 242 116 139 233 chr3 69153534 69153706 -148883452 + L1ME4a LINE L1 5963 6118 -3 254 376 53 0 chr3 69154318 69154451 -148882707 + MER5A DNA MER1_type 2 141 -48 2365 91 3 3 chr3 69155158 69155467 -148881691 - AluSc SINE Alu 0 309 1 853 162 66 61 chr3 69155577 69155616 -148881542 - Charlie5 DNA MER1_type -3 2621 2584 2032 143 7 7 chr3 69155616 69155924 -148881234 - AluSx SINE Alu -4 308 1 853 162 66 61 chr3 69155924 69156112 -148881046 - Charlie5 DNA MER1_type -40 2584 2393 1920 54 0 0 chr3 69156116 69156339 -148880819 + AluY SINE Alu 1 223 -88 1616 63 0 0 chr3 69156339 69156578 -148880580 + AluY SINE Alu 92 330 0 620 296 23 23 chr3 69157166 69157386 -148879772 + MIR SINE MIR 41 260 -2 1570 174 64 0 chr3 69157609 69157898 -148879260 - AluJb SINE Alu 0 306 1 2292 94 3 3 chr3 69159725 69160024 -148877134 - AluSx SINE Alu -13 299 1 26 0 0 0 chr3 69160024 69160050 -148877108 + AT_rich Low_complexity Low_complexity 1 26 0 306 186 0 43 chr3 69160629 69160699 -148876459 + L1MB8 LINE L1 6044 6110 -68 229 200 22 0 chr3 69161127 69161172 -148875986 + L2 LINE L2 3139 3184 -88 2381 44 41 7 chr3 69161723 69162016 -148875142 - AluY SINE Alu -8 303 1 951 96 0 0 chr3 69162075 69162211 -148874947 + (TA)n Simple_repeat Simple_repeat 1 136 0 649 64 0 0 chr3 69162410 69162488 -148874670 - AluY SINE Alu -18 293 216 815 215 68 16 chr3 69162628 69162819 -148874339 - AluJb SINE Alu -7 305 105 711 128 0 17 chr3 69162833 69162950 -148874208 - FLAM_C SINE Alu 0 143 29 525 58 0 0 chr3 69162982 69163051 -148874107 - HY3 scRNA scRNA -1 100 32 380 304 81 57 chr3 69163605 69163937 -148873221 - MER102b DNA MER1_type 0 341 2 198 0 0 0 chr3 69166257 69166279 -148870879 + (T)n Simple_repeat Simple_repeat 1 22 0 1815 155 13 16 chr3 69168181 69168485 -148868673 - MER7A DNA MER2_type -44 302 2 2455 57 10 0 chr3 69168905 69169202 -148867956 - AluSc SINE Alu -9 300 1 25 31 0 0 chr3 69169855 69169887 -148867271 + AT_rich Low_complexity Low_complexity 1 32 0 1288 129 26 52 chr3 69169892 69170062 -148867096 - AluJb SINE Alu -2 310 146 1462 76 62 19 chr3 69170062 69170273 -148866885 - AluY SINE Alu -9 302 83 1288 129 26 52 chr3 69170273 69170334 -148866824 - AluJb SINE Alu -166 146 85 262 209 124 67 chr3 69170485 69170590 -148866568 - MLT1K LTR MaLR -366 222 121 1371 188 113 0 chr3 69170717 69170983 -148866175 + AluJo SINE Alu 1 296 -16 251 388 26 0 chr3 69170993 69171109 -148866049 - MIR SINE MIR -30 232 114 349 338 95 0 chr3 69172116 69172264 -148864894 + MIR SINE MIR 29 190 -72 356 271 19 109 chr3 69172308 69172518 -148864640 + MIR SINE MIR 52 242 -20 21 0 0 0 chr3 69172533 69172554 -148864604 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 69174068 69174090 -148863068 + AT_rich Low_complexity Low_complexity 1 22 0 1453 232 62 6 chr3 69175254 69175577 -148861581 - MER58B DNA MER1_type 0 341 1 272 259 0 137 chr3 69176284 69176376 -148860782 + MIR SINE MIR 134 204 -58 2344 73 0 13 chr3 69176376 69176679 -148860479 + AluY SINE Alu 1 299 -12 272 259 0 137 chr3 69176679 69176717 -148860441 + MIR SINE MIR 204 246 -16 599 229 136 7 chr3 69176921 69177061 -148860097 + MER58A DNA MER1_type 1 158 0 287 85 21 43 chr3 69177130 69177177 -148859981 + MER58A DNA MER1_type 170 215 -9 2205 102 23 7 chr3 69177178 69177481 -148859677 + AluSg SINE Alu 1 308 -2 2044 126 0 35 chr3 69178254 69178564 -148858594 - AluSx SINE Alu -13 299 1 1892 129 3 52 chr3 69179650 69179976 -148857182 - AluSx SINE Alu -2 310 1 22 0 0 0 chr3 69180120 69180142 -148857016 + AT_rich Low_complexity Low_complexity 1 22 0 229 354 31 0 chr3 69180198 69180263 -148856895 - L2 LINE L2 0 3272 3206 316 239 259 30 chr3 69181567 69181764 -148855394 + L1MC/D LINE L1 5560 5801 -2007 26 50 0 0 chr3 69181918 69181958 -148855200 + AT_rich Low_complexity Low_complexity 1 40 0 309 150 0 50 chr3 69182730 69182790 -148854368 - AluJb SINE Alu 0 302 246 831 196 65 13 chr3 69182797 69182950 -148854208 - AluJb SINE Alu -147 165 5 1935 114 0 4 chr3 69183132 69183387 -148853771 - AluSx SINE Alu -25 287 34 1736 143 18 14 chr3 69184046 69184326 -148852832 + AluJb SINE Alu 7 287 -25 872 232 130 9 chr3 69184438 69184783 -148852375 - MER113 DNA MER1_type? -90 431 45 4945 100 28 35 chr3 69185267 69185962 -148851196 - L1PA10 LINE L1 -1 6167 5475 2099 116 3 7 chr3 69185962 69186278 -148850880 + AluSx SINE Alu 1 315 0 4945 100 28 35 chr3 69186278 69186360 -148850798 - L1PA10 LINE L1 -693 5475 5394 1784 111 58 0 chr3 69187010 69187271 -148849887 + AluSq SINE Alu 1 276 -37 508 339 47 33 chr3 69187539 69187840 -148849318 - MLT1L LTR MaLR -179 436 132 1626 147 42 18 chr3 69187912 69188198 -148848960 - AluSx SINE Alu -19 293 1 889 110 0 0 chr3 69188220 69188338 -148848820 - AluSq/x SINE Alu -194 118 1 1076 194 0 0 chr3 69188525 69188716 -148848442 - MER3 DNA MER1_type -18 191 1 597 269 121 41 chr3 69188999 69189337 -148847821 - L2 LINE L2 0 3313 2949 1061 206 14 23 chr3 69189471 69189690 -148847468 + MER20 DNA MER1_type 2 218 -1 1933 156 7 10 chr3 69191276 69191578 -148845580 - AluSx SINE Alu -11 301 1 293 80 120 7 chr3 69192119 69192269 -148844889 + (TA)n Simple_repeat Simple_repeat 1 167 0 820 233 0 17 chr3 69193550 69193730 -148843428 + AluJb SINE Alu 134 310 -2 530 300 37 47 chr3 69193995 69194295 -148842863 + HAL1b LINE L1 339 635 -713 1076 248 41 64 chr3 69194452 69194871 -148842287 + L1MC5 LINE L1 7168 7576 -385 1188 188 217 96 chr3 69195084 69195541 -148841617 - MLT2B1 LTR ERVL -6 514 3 216 0 0 0 chr3 69195587 69195611 -148841547 + (T)n Simple_repeat Simple_repeat 1 24 0 2278 82 0 0 chr3 69196147 69196450 -148840708 - AluY SINE Alu -8 303 1 2230 111 3 0 chr3 69197595 69197892 -148839266 - AluSc SINE Alu -11 298 1 727 177 80 0 chr3 69197897 69198010 -148839148 - FLAM_A SINE Alu -11 122 1 2287 87 3 3 chr3 69198560 69198858 -148838300 + AluSx SINE Alu 1 298 -14 1571 174 64 0 chr3 69200686 69200975 -148836183 + AluJb SINE Alu 1 306 0 620 296 23 23 chr3 69201198 69201418 -148835740 - MIR SINE MIR -2 260 41 1615 63 0 0 chr3 69202268 69202511 -148834647 - AluY SINE Alu 0 334 92 1920 54 0 0 chr3 69202511 69202734 -148834424 - AluY SINE Alu -88 223 1 820 164 65 74 chr3 69202738 69202929 -148834229 + Charlie5 DNA MER1_type 2393 2583 -41 1982 141 7 10 chr3 69202929 69203235 -148833923 + AluSx SINE Alu 4 308 -4 820 164 65 74 chr3 69203235 69203274 -148833884 + Charlie5 DNA MER1_type 2583 2621 -3 2191 109 3 7 chr3 69203384 69203686 -148833472 + AluSc SINE Alu 1 301 -8 180 297 27 27 chr3 69204783 69204857 -148832301 + MIR SINE MIR 60 133 -129 380 294 8 0 chr3 69204957 69205076 -148832082 + MIR SINE MIR 95 214 -48 2060 128 7 3 chr3 69206311 69206608 -148830550 - AluSc SINE Alu -8 301 4 23 0 0 0 chr3 69206764 69206787 -148830371 + AT_rich Low_complexity Low_complexity 1 23 0 2320 61 7 14 chr3 69206969 69207264 -148829894 + AluY SINE Alu 1 293 -18 286 330 22 0 chr3 69207677 69207768 -148829390 + AluJ/FLAM SINE Alu 4 96 -206 249 33 0 0 chr3 69207895 69207925 -148829233 + (A)n Simple_repeat Simple_repeat 1 30 0 1967 159 0 10 chr3 69208351 69208659 -148828499 + AluJb SINE Alu 1 305 -7 21 71 0 0 chr3 69208723 69208765 -148828393 + AT_rich Low_complexity Low_complexity 1 42 0 385 250 0 0 chr3 69209256 69209344 -148827814 + MER103 DNA DNA 2 89 -77 1551 191 10 23 chr3 69209930 69210233 -148826925 - AluJo SINE Alu -7 305 7 276 258 52 72 chr3 69210501 69210598 -148826560 - MER20 DNA MER1_type -120 99 5 2244 117 3 0 chr3 69212445 69212753 -148824405 + AluSx SINE Alu 1 309 -3 36 53 0 0 chr3 69213084 69213141 -148824017 + AT_rich Low_complexity Low_complexity 1 57 0 370 324 111 15 chr3 69213276 69213538 -148823620 - L1MC4a LINE L1 -1930 5878 5592 270 289 160 19 chr3 69214185 69214341 -148822817 - MIR SINE MIR 0 262 85 2126 131 0 0 chr3 69214445 69214735 -148822423 - AluSx SINE Alu -17 295 6 1912 151 0 0 chr3 69215752 69216036 -148821122 - AluSx SINE Alu -28 284 1 3693 36 0 0 chr3 69216337 69216753 -148820405 + L1PA4 LINE L1 5737 6152 -3 184 368 71 19 chr3 69217586 69217741 -148819417 + L2 LINE L2 3096 3258 -14 1228 135 62 5 chr3 69217849 69218042 -148819116 + MER3 DNA MER1_type 2 205 -4 264 203 29 29 chr3 69218080 69218149 -148819009 - L2 LINE L2 -2 3311 3243 186 43 0 0 chr3 69218659 69218682 -148818476 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 1769 128 105 25 chr3 69218773 69219280 -148817878 - MER51A LTR ERV1 -9 625 1 316 316 20 62 chr3 69219436 69219675 -148817483 - L2 LINE L2 -307 3006 2781 183 42 0 0 chr3 69219721 69219745 -148817413 + (CA)n Simple_repeat Simple_repeat 2 25 0 515 217 42 8 chr3 69220604 69220724 -148816434 + LTR16C LTR ERVL 368 491 0 298 247 75 21 chr3 69221100 69221193 -148815965 + Charlie8 DNA MER1_type 26 123 -2294 29 0 0 0 chr3 69222074 69222103 -148815055 + AT_rich Low_complexity Low_complexity 1 29 0 1468 185 0 11 chr3 69222400 69222660 -148814498 - AluJo SINE Alu -16 296 40 234 0 0 0 chr3 69223456 69223482 -148813676 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1707 165 18 28 chr3 69223489 69223774 -148813384 - AluJo SINE Alu -30 282 1 1178 174 15 0 chr3 69223822 69224018 -148813140 + AluJo SINE Alu 95 293 -19 1215 207 103 41 chr3 69228955 69229322 -148807836 - Charlie4a DNA MER1_type -97 411 22 749 234 91 24 chr3 69229334 69229543 -148807615 - MER58A DNA MER1_type 0 224 2 1454 199 22 22 chr3 69229755 69230067 -148807091 - AluJb SINE Alu 0 312 1 189 298 85 32 chr3 69230081 69230175 -148806983 - L2 LINE L2 -67 3246 3148 256 256 35 0 chr3 69230720 69230806 -148806352 + MER117 DNA MER1_type 68 156 -41 2251 104 0 0 chr3 69232158 69232447 -148804711 - AluSx SINE Alu -23 289 1 1152 163 4 98 chr3 69232888 69233152 -148804006 - AluJo SINE Alu -39 273 35 1962 109 4 4 chr3 69233331 69233644 -148803514 - AluSc SINE Alu 0 326 14 735 324 80 0 chr3 69235649 69235887 -148801271 - MIR SINE MIR -3 259 3 285 218 150 75 chr3 69235941 69235991 -148801167 + MIR SINE MIR 105 150 -112 2296 96 10 26 chr3 69235991 69236303 -148800855 + AluSx SINE Alu 1 307 -5 285 218 150 75 chr3 69236303 69236399 -148800759 + MIR SINE MIR 150 262 0 266 291 47 27 chr3 69237879 69238027 -148799131 + MER104 DNA Tc2 30 180 0 214 324 14 0 chr3 69238489 69238563 -148798595 + GA-rich Low_complexity Low_complexity 4 78 0 22 0 0 0 chr3 69239255 69239277 -148797881 + AT_rich Low_complexity Low_complexity 1 22 0 2033 169 52 3 chr3 69239607 69239974 -148797184 - L1MC3 LINE L1 -189 7596 7212 247 293 0 12 chr3 69239983 69240065 -148797093 - MLT1F1 LTR MaLR -439 128 48 718 243 96 9 chr3 69240162 69240380 -148796778 + MIR SINE MIR 17 253 -9 2205 84 32 3 chr3 69240897 69241181 -148795977 - AluSq SINE Alu -21 292 1 999 109 22 0 chr3 69241548 69241686 -148795472 - AluJb SINE Alu -13 299 159 207 204 0 23 chr3 69241715 69241759 -148795399 + GA-rich Low_complexity Low_complexity 5 47 0 1744 97 23 31 chr3 69242020 69242277 -148794881 + AluSg SINE Alu 42 296 -14 257 268 0 28 chr3 69242828 69242899 -148794259 - MER94 DNA DNA -46 88 20 502 229 127 0 chr3 69243216 69243334 -148793824 + MER58A DNA MER1_type 4 136 0 242 130 65 0 chr3 69243335 69243381 -148793777 + MER58A DNA MER1_type 169 217 -7 1316 180 7 33 chr3 69243404 69243710 -148793448 - MER33 DNA MER1_type -22 302 5 22 0 0 0 chr3 69244916 69244938 -148792220 + AT_rich Low_complexity Low_complexity 1 22 0 1169 190 33 0 chr3 69245384 69245595 -148791563 + MER20 DNA MER1_type 1 218 -1 189 0 0 0 chr3 69245767 69245788 -148791370 + (A)n Simple_repeat Simple_repeat 1 21 0 199 250 0 0 chr3 69248565 69248613 -148788545 + MER5B DNA MER1_type 1 48 -130 24 0 0 0 chr3 69249156 69249180 -148787978 + AT_rich Low_complexity Low_complexity 1 24 0 518 283 96 15 chr3 69249193 69249391 -148787767 + MIR SINE MIR 49 262 0 227 250 100 30 chr3 69249807 69249907 -148787251 + MIR SINE MIR 132 238 -24 215 292 54 46 chr3 69249944 69250074 -148787084 - L2 LINE L2 -454 2860 2730 262 152 101 51 chr3 69250149 69250228 -148786930 - MLT1L LTR MaLR -332 283 201 180 0 0 0 chr3 69252440 69252460 -148784698 + (TG)n Simple_repeat Simple_repeat 1 20 0 288 0 0 0 chr3 69252515 69252547 -148784611 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 1863 125 18 79 chr3 69253450 69253778 -148783380 + AluSx SINE Alu 1 308 -4 441 0 0 0 chr3 69253780 69253829 -148783329 + (TG)n Simple_repeat Simple_repeat 2 50 0 230 292 158 8 chr3 69253903 69254023 -148783135 - MIR SINE MIR -1 261 124 331 290 108 45 chr3 69254063 69254127 -148783031 - MIR SINE MIR -40 222 163 2163 93 0 42 chr3 69254127 69254437 -148782721 - AluSx SINE Alu -15 297 1 331 290 108 45 chr3 69254437 69254548 -148782610 - MIR SINE MIR -99 163 36 338 318 8 16 chr3 69255051 69255180 -148781978 - MIR SINE MIR -27 235 108 1629 151 28 53 chr3 69255351 69255670 -148781488 + AluSx SINE Alu 1 311 -1 393 313 0 0 chr3 69255987 69256083 -148781075 - L2 LINE L2 -3 3310 3215 284 235 44 0 chr3 69256319 69256387 -148780771 - MIR3 SINE MIR -35 173 103 2030 128 3 10 chr3 69256484 69256781 -148780377 + AluSx SINE Alu 1 295 -17 462 48 111 8 chr3 69257211 69257471 -148779687 + (TA)n Simple_repeat Simple_repeat 1 286 0 889 239 0 17 chr3 69258751 69258931 -148778227 + AluJb SINE Alu 134 310 -2 530 300 37 47 chr3 69259249 69259549 -148777609 + HAL1b LINE L1 339 635 -713 1131 243 41 64 chr3 69259706 69260125 -148777033 + L1MC5 LINE L1 7168 7576 -385 1243 186 217 94 chr3 69260338 69260794 -148776364 - MLT2B1 LTR ERVL -6 514 3 225 0 0 0 chr3 69260841 69260866 -148776292 + (T)n Simple_repeat Simple_repeat 1 25 0 2319 79 0 0 chr3 69261402 69261705 -148775453 - AluY SINE Alu -8 303 1 185 351 63 9 chr3 69261767 69261878 -148775280 - MIR SINE MIR -101 161 45 398 286 8 0 chr3 69262033 69262152 -148775006 - MIR SINE MIR -48 214 95 180 297 27 27 chr3 69262252 69262326 -148774832 - MIR SINE MIR -129 133 60 2145 117 7 3 chr3 69263423 69263723 -148773435 - AluSc SINE Alu -8 301 1 23 0 0 0 chr3 69263876 69263899 -148773259 + AT_rich Low_complexity Low_complexity 1 23 0 2310 61 7 14 chr3 69264081 69264375 -148772783 + AluY SINE Alu 1 292 -19 766 159 230 0 chr3 69264793 69264919 -148772239 + AluJo SINE Alu 11 165 -147 1172 198 161 4 chr3 69265080 69265322 -148771836 + AluJo SINE Alu 11 290 -22 1509 188 0 33 chr3 69266175 69266478 -148770680 - AluJo SINE Alu -19 293 1 193 318 0 0 chr3 69266516 69266582 -148770576 + MIR SINE MIR 179 244 -18 266 319 18 0 chr3 69267297 69267410 -148769748 + MER46C DNA MER2_type 2 116 -222 516 309 79 56 chr3 69267425 69267816 -148769342 + MLT1I LTR MaLR 2 401 -8 192 324 36 36 chr3 69268856 69268967 -148768191 - L2 LINE L2 0 3313 3203 2405 87 3 0 chr3 69271080 69271392 -148765766 - AluSp SINE Alu 0 313 1 207 0 0 0 chr3 69271985 69272008 -148765150 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 608 304 92 12 chr3 69272816 69273056 -148764102 - MIR SINE MIR 0 262 4 272 246 53 0 chr3 69273112 69273169 -148763989 - MIR SINE MIR -90 172 113 23 0 0 0 chr3 69273202 69273225 -148763933 + AT_rich Low_complexity Low_complexity 1 23 0 2457 121 33 8 chr3 69273229 69273586 -148763572 - L1PB1 LINE L1 -2 6149 5780 369 0 0 0 chr3 69273586 69273627 -148763531 + (TG)n Simple_repeat Simple_repeat 2 42 0 2457 121 33 8 chr3 69273627 69273665 -148763493 - L1PB1 LINE L1 -371 5780 5744 2053 130 3 7 chr3 69274083 69274391 -148762767 - AluSx SINE Alu -1 311 5 1566 158 14 27 chr3 69275147 69275300 -148761858 - AluSx SINE Alu -24 288 139 1913 151 7 13 chr3 69275300 69275599 -148761559 - AluSx SINE Alu -13 299 3 1566 158 14 27 chr3 69275599 69275737 -148761421 - AluSx SINE Alu -173 139 1 1403 184 119 14 chr3 69276132 69276485 -148760673 - MLT1B LTR MaLR 0 390 1 300 296 98 0 chr3 69278050 69278182 -148758976 - L1ME4a LINE L1 -4 6117 5973 354 321 107 16 chr3 69278424 69278667 -148758491 - L1ME4a LINE L1 -166 5955 5691 2145 117 6 19 chr3 69279157 69279473 -148757685 - AluSx SINE Alu 0 312 1 249 102 0 0 chr3 69280174 69280223 -148756935 + Alu SINE Alu 252 300 0 246 62 0 0 chr3 69281071 69281103 -148756055 + (A)n Simple_repeat Simple_repeat 1 32 0 542 234 43 16 chr3 69281103 69281341 -148755817 + MLT1J2 LTR MaLR 120 436 -14 206 254 0 30 chr3 69281734 69281801 -148755357 + (CATA)n Simple_repeat Simple_repeat 2 66 0 2242 94 3 3 chr3 69282352 69282650 -148754508 - AluSx SINE Alu -14 298 1 771 102 4 181 chr3 69282715 69282905 -148754253 - MER53 DNA DNA -3 186 41 1532 195 0 34 chr3 69282905 69283202 -148753956 - AluJo SINE Alu -25 287 1 771 102 4 181 chr3 69283202 69283237 -148753921 - MER53 DNA DNA -148 41 1 234 262 78 78 chr3 69283353 69283456 -148753702 + L2 LINE L2 3169 3271 -1 204 400 0 0 chr3 69283722 69283822 -148753336 + L3b LINE CR1 1356 1455 -128 527 323 58 17 chr3 69284351 69284583 -148752575 + MIR SINE MIR 8 256 -6 199 299 77 111 chr3 69284814 69284931 -148752227 + MIR SINE MIR 18 130 -132 200 254 0 79 chr3 69284947 69285010 -148752148 + L2 LINE L2 3195 3252 -20 1918 156 3 0 chr3 69285041 69285324 -148751834 + AluJb SINE Alu 5 288 -24 477 176 33 0 chr3 69285347 69285437 -148751721 - MER3 DNA MER1_type 0 209 117 1854 208 21 19 chr3 69285437 69285903 -148751255 + MLT1C LTR MaLR 1 467 0 367 245 75 0 chr3 69285903 69286009 -148751149 - MER3 DNA MER1_type -88 121 8 420 268 49 35 chr3 69287189 69287331 -148749827 - MIR SINE MIR -16 246 103 2070 114 13 7 chr3 69288547 69288853 -148748305 - AluSx SINE Alu 0 312 5 479 191 0 0 chr3 69290340 69290434 -148746724 + MLT1F1 LTR MaLR 474 567 0 516 275 110 30 chr3 69291382 69291618 -148745540 - L2 LINE L2 -3 3310 3056 1644 244 72 22 chr3 69291627 69292126 -148745032 + MLT1F LTR MaLR 15 538 -4 312 370 82 14 chr3 69292200 69292481 -148744677 + MLT1K LTR MaLR 95 394 -194 231 255 61 31 chr3 69292714 69292812 -148744346 + MIR SINE MIR 114 214 -48 180 0 0 0 chr3 69294047 69294067 -148743091 + (T)n Simple_repeat Simple_repeat 1 20 0 1078 168 19 19 chr3 69294530 69294744 -148742414 - L1MB5 LINE L1 -2 6172 5959 331 333 39 43 chr3 69294926 69295160 -148741998 - L1MC4a LINE L1 -1810 5998 5766 288 324 38 0 chr3 69295607 69295712 -148741446 - MIR SINE MIR -64 144 36 453 206 67 72 chr3 69296240 69296420 -148740738 - MER20 DNA MER1_type -7 212 34 233 341 12 0 chr3 69297708 69297793 -148739365 - MIR SINE MIR -130 132 47 192 273 55 36 chr3 69298272 69298327 -148738831 + L2 LINE L2 3238 3293 -20 2260 107 0 10 chr3 69298830 69299139 -148738019 - AluSx SINE Alu -6 306 1 1317 208 80 7 chr3 69299143 69299547 -148737611 - L1MD2 LINE L1 0 6242 5809 1091 155 103 5 chr3 69300398 69300662 -148736496 + MER1B DNA MER1_type 1 329 0 2192 89 3 45 chr3 69300776 69301090 -148736068 - AluSp SINE Alu -12 301 1 356 300 0 46 chr3 69301285 69301415 -148735743 + MIR3 SINE MIR 82 205 -3 392 297 41 57 chr3 69302354 69302600 -148734558 + MIR SINE MIR 10 251 -11 405 327 143 5 chr3 69303688 69303911 -148733247 - MIR SINE MIR 0 262 9 2323 101 3 0 chr3 69304984 69305292 -148731866 - AluSc SINE Alu 0 309 1 339 314 0 42 chr3 69305940 69306058 -148731100 - MIR SINE MIR -73 135 23 182 294 29 39 chr3 69306526 69306628 -148730530 - MIR SINE MIR -12 250 150 268 297 80 67 chr3 69306681 69306920 -148730238 + L2 LINE L2 2720 2961 -353 261 57 0 0 chr3 69307952 69307987 -148729171 + (TCCCC)n Simple_repeat Simple_repeat 4 38 0 1469 194 45 0 chr3 69307994 69308143 -148729015 - AluJb SINE Alu -32 280 112 315 0 0 0 chr3 69308143 69308178 -148728980 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1469 194 45 0 chr3 69308178 69308296 -148728862 - AluJb SINE Alu -200 112 1 516 190 6 2 chr3 69308409 69308531 -148728627 - MLT1A1 LTR MaLR -248 126 3 1278 130 11 193 chr3 69308710 69309072 -148728086 - AluY SINE Alu -11 300 5 257 229 18 31 chr3 69309404 69309481 -148727677 + MIR3 SINE MIR 104 181 -27 998 59 0 7 chr3 69309504 69309639 -148727519 + (TTATG)n Simple_repeat Simple_repeat 4 137 0 1338 165 123 31 chr3 69309639 69309899 -148727259 - AluJo SINE Alu -28 284 1 615 228 148 0 chr3 69310622 69310771 -148726387 + FAM SINE Alu 1 171 -4 517 303 78 26 chr3 69310776 69311007 -148726151 + MIR SINE MIR 20 262 0 363 332 77 4 chr3 69311443 69311717 -148725441 + L1ME3A LINE L1 5533 5826 -344 370 290 127 41 chr3 69312176 69312397 -148724761 + MIR SINE MIR 2 241 -21 784 241 32 32 chr3 69312986 69313202 -148723956 + MER20 DNA MER1_type 4 219 0 262 111 0 37 chr3 69314022 69314076 -148723082 + (CA)n Simple_repeat Simple_repeat 2 53 0 180 0 0 0 chr3 69314393 69314413 -148722745 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1356 238 38 42 chr3 69314498 69314973 -148722185 + L1MD3 LINE L1 7523 7995 0 999 71 47 0 chr3 69315022 69315149 -148722009 + AluSq/x SINE Alu 1 133 -180 1726 155 0 53 chr3 69316877 69317200 -148719958 - AluJo SINE Alu -6 306 1 1791 155 0 43 chr3 69319401 69319723 -148717435 - AluJo SINE Alu -4 308 1 247 367 41 20 chr3 69319932 69320030 -148717128 + L3 LINE CR1 287 386 -1191 1254 211 75 89 chr3 69320238 69320467 -148716691 - L1M4 LINE L1 -1598 4548 4317 250 189 0 0 chr3 69320467 69320504 -148716654 - Tigger3(Golem) DNA MER2_type 0 3038 3002 1254 211 75 89 chr3 69320504 69320730 -148716428 - L1M4 LINE L1 -1829 4317 4064 274 337 11 0 chr3 69321042 69321137 -148716021 - L2 LINE L2 0 3313 3218 1788 155 3 44 chr3 69321247 69321564 -148715594 + AluJb SINE Alu 1 304 -8 29 0 0 0 chr3 69321867 69321896 -148715262 + AT_rich Low_complexity Low_complexity 1 29 0 255 114 0 0 chr3 69322789 69322824 -148714334 - MER20 DNA MER1_type -1 218 184 1504 183 0 23 chr3 69324655 69324918 -148712240 - AluJb SINE Alu -37 275 19 2180 112 3 6 chr3 69326533 69326845 -148710313 + AluSx SINE Alu 1 311 -1 2659 121 33 8 chr3 69327263 69327301 -148709857 + L1PB1 LINE L1 5744 5780 -371 261 0 0 0 chr3 69327301 69327330 -148709828 + (CA)n Simple_repeat Simple_repeat 2 30 0 2659 121 33 8 chr3 69327330 69327687 -148709471 + L1PB1 LINE L1 5780 6149 -2 23 0 0 0 chr3 69327691 69327714 -148709444 + AT_rich Low_complexity Low_complexity 1 23 0 278 241 52 0 chr3 69327746 69327804 -148709354 + MIR SINE MIR 112 172 -90 598 304 92 12 chr3 69327860 69328100 -148709058 + MIR SINE MIR 4 262 0 207 0 0 0 chr3 69328908 69328931 -148708227 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2337 88 3 7 chr3 69329524 69329831 -148707327 + AluSp SINE Alu 1 306 -7 192 324 36 36 chr3 69331956 69332067 -148705091 + L2 LINE L2 3203 3313 0 516 309 79 56 chr3 69333107 69333498 -148703660 - MLT1I LTR MaLR -8 401 2 1984 152 0 10 chr3 69333947 69334250 -148702908 + AluSg SINE Alu 1 300 -10 1332 175 7 56 chr3 69334267 69334553 -148702605 + AluJb SINE Alu 6 277 -35 468 0 0 0 chr3 69334553 69334605 -148702553 + (TAGG)n Simple_repeat Simple_repeat 4 55 0 384 288 18 18 chr3 69335107 69335270 -148701888 - MER117 DNA MER1_type -34 163 1 1806 151 30 13 chr3 69335620 69335924 -148701234 + AluJo SINE Alu 3 311 -1 2106 90 50 0 chr3 69335931 69336208 -148700950 + AluSx SINE Alu 14 304 -8 1283 222 7 18 chr3 69337113 69337392 -148699766 - AluJo SINE Alu -4 308 33 353 254 0 0 chr3 69337392 69337459 -148699699 - AluJ/FLAM SINE Alu -235 67 1 352 242 42 0 chr3 69338181 69338324 -148698834 - L1ME LINE L1 -688 5476 5328 253 318 27 55 chr3 69339010 69339120 -148698038 + L2 LINE L2 3156 3262 -10 318 333 86 36 chr3 69339541 69339844 -148697314 - L1ME LINE L1 -524 5597 5280 767 177 27 14 chr3 69340830 69340977 -148696181 - L1PA16 LINE L1 -3 6163 6015 2515 69 0 0 chr3 69340988 69341291 -148695867 - AluY SINE Alu -8 303 1 201 293 0 0 chr3 69341292 69341333 -148695825 + MER91 DNA MER1_type 141 181 -15 2260 94 3 3 chr3 69342721 69343020 -148694138 + AluSx SINE Alu 1 299 -13 322 341 143 5 chr3 69344137 69344360 -148692798 - MIR SINE MIR 0 262 9 2320 101 3 0 chr3 69345433 69345741 -148691417 - AluSc SINE Alu 0 309 1 337 254 42 85 chr3 69346389 69346507 -148690651 - MIR SINE MIR -73 135 23 182 294 29 39 chr3 69346975 69347077 -148690081 - MIR SINE MIR -12 250 150 277 297 80 67 chr3 69347130 69347369 -148689789 + L2 LINE L2 2720 2961 -353 261 57 0 0 chr3 69348401 69348436 -148688722 + (TCCCC)n Simple_repeat Simple_repeat 4 38 0 1460 194 45 0 chr3 69348443 69348592 -148688566 - AluJb SINE Alu -32 280 112 315 0 0 0 chr3 69348592 69348627 -148688531 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1460 194 45 0 chr3 69348627 69348745 -148688413 - AluJb SINE Alu -200 112 1 562 190 6 2 chr3 69348858 69348980 -148688178 - MLT1A1 LTR MaLR -248 126 3 1412 167 23 27 chr3 69349159 69349422 -148687736 - AluJo SINE Alu -11 301 40 234 0 0 0 chr3 69350218 69350244 -148686914 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1707 165 18 28 chr3 69350251 69350536 -148686622 - AluJo SINE Alu -30 282 1 1165 179 15 0 chr3 69350584 69350780 -148686378 + AluJo SINE Alu 95 293 -19 384 292 70 38 chr3 69352157 69352342 -148684816 - MIR SINE MIR -5 257 67 2089 115 3 10 chr3 69353161 69353492 -148683666 + AluSq SINE Alu 1 313 0 222 274 14 14 chr3 69353871 69353944 -148683214 + (TA)n Simple_repeat Simple_repeat 1 73 0 565 97 0 65 chr3 69355997 69356009 -148681149 - L1MC1 LINE L1 0 6333 6322 2255 100 0 16 chr3 69356009 69356320 -148680838 - AluSc SINE Alu -3 306 1 565 97 0 65 chr3 69356320 69356400 -148680758 - L1MC1 LINE L1 -11 6322 6247 232 219 81 81 chr3 69356400 69356560 -148680598 + MER104 DNA Tc2 20 179 -1 414 0 0 0 chr3 69356744 69356790 -148680368 + (TTCC)n Simple_repeat Simple_repeat 2 47 0 24 32 0 0 chr3 69356851 69356882 -148680276 + AT_rich Low_complexity Low_complexity 1 31 0 1628 174 32 67 chr3 69357047 69357420 -148679738 + MER46B DNA MER2_type 1 235 -1 214 254 0 0 chr3 69358085 69358140 -148679018 + (TG)n Simple_repeat Simple_repeat 2 56 0 2023 125 0 7 chr3 69359243 69359540 -148677618 + AluSc SINE Alu 14 308 -1 2659 121 33 8 chr3 69359958 69359996 -148677162 + L1PB1 LINE L1 5744 5780 -371 261 0 0 0 chr3 69359996 69360025 -148677133 + (CA)n Simple_repeat Simple_repeat 2 30 0 2659 121 33 8 chr3 69360025 69360382 -148676776 + L1PB1 LINE L1 5780 6149 -2 23 0 0 0 chr3 69360386 69360409 -148676749 + AT_rich Low_complexity Low_complexity 1 23 0 278 241 52 0 chr3 69360441 69360499 -148676659 + MIR SINE MIR 112 172 -90 598 304 92 12 chr3 69360555 69360795 -148676363 + MIR SINE MIR 4 262 0 1412 244 76 43 chr3 69361906 69362702 -148674456 + L1MC4 LINE L1 6941 7830 -212 2182 101 10 3 chr3 69362702 69363010 -148674148 + AluY SINE Alu 1 310 -1 1412 244 76 43 chr3 69363010 69363228 -148673930 + L1MC4 LINE L1 7830 8039 -3 246 62 0 0 chr3 69364074 69364106 -148673052 + (TCTCC)n Simple_repeat Simple_repeat 2 33 0 761 219 22 0 chr3 69364108 69364245 -148672913 - FRAM SINE Alu -32 144 5 889 239 0 17 chr3 69366754 69366934 -148670224 + AluJb SINE Alu 134 310 -2 530 300 37 47 chr3 69367252 69367552 -148669606 + HAL1b LINE L1 339 635 -713 1131 243 41 64 chr3 69367709 69368128 -148669030 + L1MC5 LINE L1 7168 7576 -385 429 269 142 0 chr3 69368364 69368505 -148668653 - MER5A DNA MER1_type -11 178 18 2156 116 3 0 chr3 69368703 69368997 -148668161 - AluSg SINE Alu -15 295 1 304 281 58 14 chr3 69369187 69369326 -148667832 - MIR SINE MIR -65 197 53 2140 48 0 4 chr3 69369407 69369656 -148667502 + AluY SINE Alu 32 279 -32 233 29 29 0 chr3 69369656 69369690 -148667468 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 452 351 69 0 chr3 69370968 69371170 -148665988 + MIR SINE MIR 31 246 -16 3002 211 47 45 chr3 69372139 69373605 -148663553 + L1MC/D LINE L1 4337 5816 -543 2176 119 0 0 chr3 69374230 69374533 -148662625 - AluSx SINE Alu -7 305 3 24 0 0 0 chr3 69374706 69374730 -148662428 + AT_rich Low_complexity Low_complexity 1 24 0 1127 182 0 38 chr3 69376411 69376620 -148660538 - AluJo SINE Alu -26 286 86 185 308 0 13 chr3 69376661 69376739 -148660419 + MIR SINE MIR 181 257 -5 344 330 33 33 chr3 69377419 69377641 -148659517 + MIR SINE MIR 41 261 -1 25 0 0 0 chr3 69378056 69378081 -148659077 + AT_rich Low_complexity Low_complexity 1 25 0 2100 110 7 0 chr3 69378102 69378384 -148658774 - AluSq SINE Alu -29 284 1 727 177 80 0 chr3 69378389 69378502 -148658656 - FLAM_A SINE Alu -11 122 1 1321 178 42 63 chr3 69379038 69379370 -148657788 + L1MD2 LINE L1 6033 6357 -2 558 254 132 25 chr3 69380132 69380329 -148656829 + MER20 DNA MER1_type 2 219 0 1456 189 44 0 chr3 69380669 69380939 -148656219 + AluJo SINE Alu 19 300 -12 524 292 27 50 chr3 69380949 69381168 -148655990 + MIR SINE MIR 49 262 0 25 31 0 0 chr3 69381182 69381214 -148655944 + AT_rich Low_complexity Low_complexity 1 32 0 1794 130 81 14 chr3 69381843 69382128 -148655030 - AluSg SINE Alu -6 304 1 205 241 253 0 chr3 69383022 69383101 -148654057 + L2 LINE L2 3169 3267 -5 2091 133 7 0 chr3 69383378 69383672 -148653486 + AluSx SINE Alu 17 312 0 205 333 21 11 chr3 69384294 69384387 -148652771 + MIR SINE MIR 165 258 -4 332 311 11 28 chr3 69384892 69385072 -148652086 + CT-rich Low_complexity Low_complexity 2 178 0 207 259 17 0 chr3 69385977 69386035 -148651123 - MIR SINE MIR -68 194 136 202 330 0 21 chr3 69386206 69386300 -148650858 + C-rich Low_complexity Low_complexity 4 95 0 1404 55 6 0 chr3 69386515 69386696 -148650462 - L1PA4 LINE L1 -62 6093 5912 844 153 7 44 chr3 69386744 69386881 -148650277 - FLAM_C SINE Alu 0 133 2 239 286 71 0 chr3 69387570 69387640 -148649518 - L2 LINE L2 -13 3259 3185 1117 207 22 27 chr3 69387734 69387849 -148649309 - MER58A DNA MER1_type -2196 224 109 1363 219 92 12 chr3 69387849 69388187 -148648971 + MLT1A1 LTR MaLR 1 365 0 1117 207 22 27 chr3 69388187 69388293 -148648865 - MER58A DNA MER1_type -2311 109 4 321 303 116 72 chr3 69388296 69388507 -148648651 - MLT1L LTR MaLR -156 459 228 2165 122 3 0 chr3 69388507 69388803 -148648355 + AluSx SINE Alu 1 297 -15 321 303 116 72 chr3 69388803 69388911 -148648247 - MLT1L LTR MaLR -387 228 126 457 274 130 0 chr3 69389001 69389147 -148648011 + MER5A DNA MER1_type 18 182 -7 2365 134 45 0 chr3 69389236 69389610 -148647548 + MSTA LTR MaLR 1 391 -37 326 122 0 0 chr3 69390283 69390332 -148646826 + (TTCC)n Simple_repeat Simple_repeat 1 49 0 951 161 15 55 chr3 69392564 69392763 -148644395 + MER20 DNA MER1_type 1 191 -28 22 56 0 0 chr3 69393935 69393971 -148643187 + AT_rich Low_complexity Low_complexity 1 36 0 1887 85 30 41 chr3 69394468 69394739 -148642419 + AluSg SINE Alu 1 268 -42 216 0 0 0 chr3 69395426 69395450 -148641708 + (CAAAAA)n Simple_repeat Simple_repeat 3 26 0 476 269 128 36 chr3 69396219 69396438 -148640720 - MIR SINE MIR -12 250 12 218 286 95 40 chr3 69396965 69397091 -148640067 + L2 LINE L2 3179 3311 -2 * 256 316 41 0 chr3 69397062 69397160 -148639998 + MIR SINE MIR 71 172 -90 731 297 123 16 chr3 69398126 69398500 -148638658 - MLT1J LTR MaLR -45 466 53 195 371 21 10 chr3 69398539 69398636 -148638522 + L2 LINE L2 3175 3272 0 274 330 23 46 chr3 69398752 69398970 -148638188 - L3 LINE CR1 -291 1286 1074 392 286 194 20 chr3 69399511 69399562 -148637596 - MIR SINE MIR -32 230 189 1414 203 18 103 chr3 69399562 69399961 -148637197 + MLT1A1 LTR MaLR 1 365 0 392 286 194 20 chr3 69399961 69400105 -148637053 - MIR SINE MIR -73 189 1 189 107 0 0 chr3 69401913 69401941 -148635217 + (T)n Simple_repeat Simple_repeat 1 28 0 2176 109 6 16 chr3 69403625 69403938 -148633220 - AluSx SINE Alu 0 312 3 233 29 29 0 chr3 69404340 69404374 -148632784 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2140 48 0 4 chr3 69404374 69404623 -148632535 - AluY SINE Alu -32 279 32 304 281 58 14 chr3 69404704 69404843 -148632315 + MIR SINE MIR 53 197 -65 2087 98 14 7 chr3 69405033 69405330 -148631828 + AluSc SINE Alu 1 299 -10 1995 135 7 3 chr3 69405566 69405863 -148631295 + AluSx SINE Alu 1 298 -14 333 313 51 47 chr3 69405894 69406108 -148631050 + Charlie8 DNA MER1_type 192 406 -2011 375 293 74 60 chr3 69406183 69406398 -148630760 - MIR SINE MIR -6 256 39 1972 94 51 11 chr3 69406996 69407271 -148629887 + AluSx SINE Alu 1 286 -26 875 167 74 60 chr3 69407752 69407968 -148629190 - MER20 DNA MER1_type 0 219 1 259 244 17 0 chr3 69407976 69408041 -148629117 + HsTC2 DNA Tc2 21 86 -1812 2343 103 3 0 chr3 69408967 69409279 -148627879 + AluSq SINE Alu 1 313 0 278 253 73 101 chr3 69409435 69409613 -148627545 - MIR SINE MIR 0 262 90 344 275 51 46 chr3 69411215 69411486 -148625672 - MLT1K LTR MaLR 0 588 255 2307 109 0 0 chr3 69411732 69412035 -148625123 + AluSp SINE Alu 1 303 -10 503 240 8 25 chr3 69412070 69412191 -148624967 - L2 LINE L2 -2 3311 3193 247 350 94 11 chr3 69413171 69413351 -148623807 - MIR SINE MIR -21 241 47 2311 89 0 29 chr3 69413415 69413731 -148623427 - AluSc SINE Alu -2 307 1 2347 95 0 0 chr3 69415523 69415827 -148621331 + AluSc SINE Alu 1 304 -5 466 332 137 32 chr3 69416102 69416663 -148620495 + L2 LINE L2 2113 2732 -582 325 283 40 57 chr3 69416796 69416973 -148620185 + L2 LINE L2 2937 3110 -162 25 31 0 0 chr3 69419076 69419108 -148618050 + AT_rich Low_complexity Low_complexity 1 32 0 26 30 0 0 chr3 69419768 69419801 -148617357 + AT_rich Low_complexity Low_complexity 1 33 0 180 0 0 0 chr3 69419961 69419981 -148617177 + (TC)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr3 69421001 69421029 -148616129 + AT_rich Low_complexity Low_complexity 1 28 0 1851 164 0 25 chr3 69421805 69422123 -148615035 - AluSx SINE Alu -2 310 1 196 375 0 14 chr3 69422206 69422278 -148614880 + L2 LINE L2 3023 3093 -179 1474 93 187 0 chr3 69423020 69423266 -148613892 - MER1B DNA MER1_type 0 339 48 377 294 153 63 chr3 69423596 69423963 -148613195 + L2 LINE L2 2866 3265 -7 465 298 61 15 chr3 69424586 69424784 -148612374 + MIR SINE MIR 48 254 -8 646 212 49 38 chr3 69425419 69425603 -148611555 + MER5A DNA MER1_type 3 188 -1 254 347 40 13 chr3 69426030 69426180 -148610978 + MIR SINE MIR 37 190 -72 343 344 7 32 chr3 69426396 69426550 -148610608 - L2 LINE L2 -2 3311 3162 523 226 137 22 chr3 69426629 69426855 -148610303 - L1MC4a LINE L1 -1672 6136 5885 22 0 0 0 chr3 69427551 69427573 -148609585 + AT_rich Low_complexity Low_complexity 1 22 0 2278 106 0 3 chr3 69428649 69428950 -148608208 + AluSq SINE Alu 1 300 -13 1671 81 0 0 chr3 69428989 69429198 -148607960 + AluSg/x SINE Alu 94 302 -10 189 235 20 0 chr3 69429313 69429364 -148607794 - L2 LINE L2 0 3313 3262 632 278 163 22 chr3 69429370 69429597 -148607561 - MIR SINE MIR 0 262 4 267 337 0 12 chr3 69430337 69430423 -148606735 - L2 LINE L2 -6 3266 3182 22 35 0 0 chr3 69431605 69431634 -148605524 + AT_rich Low_complexity Low_complexity 1 29 0 233 271 77 44 chr3 69432131 69432312 -148604846 - L1MC4a LINE L1 -461 5660 5474 210 311 14 0 chr3 69432360 69432434 -148604724 + MIR SINE MIR 69 143 -65 1340 143 18 14 chr3 69434754 69434971 -148602187 - AluSq SINE Alu -21 292 75 594 217 0 0 chr3 69435385 69435523 -148601635 + L1MB7 LINE L1 6037 6174 -10 1227 248 81 43 chr3 69435632 69436303 -148600855 - L2 LINE L2 -62 3251 2531 1806 184 0 16 chr3 69436334 69436649 -148600509 - AluJb SINE Alu -2 310 1 2034 124 0 3 chr3 69437242 69437551 -148599607 + AluSx SINE Alu 3 310 0 1824 122 8 0 chr3 69437998 69438253 -148598905 + AluSq SINE Alu 37 293 -20 398 308 27 20 chr3 69438652 69438798 -148598360 + MIR SINE MIR 5 151 -111 502 291 23 11 chr3 69438896 69439071 -148598087 + MIR SINE MIR 70 246 -16 440 324 250 4 chr3 69439808 69440064 -148597094 + L3 LINE CR1 433 751 -826 1854 130 3 7 chr3 69440374 69440666 -148596492 - AluSx SINE Alu -21 291 1 691 203 12 18 chr3 69440702 69440865 -148596293 - MER106B DNA MER1_type 0 1059 898 1363 147 0 0 chr3 69441652 69441842 -148595316 - AluSq SINE Alu -123 190 1 305 304 139 17 chr3 69441896 69442133 -148595025 - L1MC4a LINE L1 -894 5252 4987 662 228 172 0 chr3 69442383 69442563 -148594595 - MER58A DNA MER1_type -4 220 10 345 241 72 84 chr3 69442576 69442786 -148594372 + MIR SINE MIR 43 250 -12 396 231 83 0 chr3 69442888 69443044 -148594114 + MER96B DNA MER1_type? 183 351 -66 286 238 89 0 chr3 69443145 69443246 -148593912 - L2 LINE L2 -181 3132 3023 2102 136 47 8 chr3 69444662 69445023 -148592135 - THE1C LTR MaLR 0 375 1 214 340 11 11 chr3 69445221 69445315 -148591843 - MIR SINE MIR -4 258 165 197 315 27 0 chr3 69445418 69445491 -148591667 - MIR3 SINE MIR -13 195 121 1564 218 27 45 chr3 69448346 69448795 -148588363 - L1MD3 LINE L1 -139 7856 7416 361 255 159 21 chr3 69449142 69449287 -148587871 - MIR SINE MIR -9 253 89 384 339 68 26 chr3 69449896 69450088 -148587070 - L2 LINE L2 0 3272 3073 267 273 33 93 chr3 69453632 69453782 -148583376 + MIR SINE MIR 76 216 -46 951 204 10 15 chr3 69453795 69454001 -148583157 - MER3 DNA MER1_type -4 205 1 23 0 0 0 chr3 69454589 69454612 -148582546 + AT_rich Low_complexity Low_complexity 1 23 0 2173 115 0 10 chr3 69454899 69455195 -148581963 - AluSx SINE Alu -19 293 1 1754 142 16 56 chr3 69456059 69456216 -148580942 - AluSx SINE Alu -21 291 150 2142 98 0 10 chr3 69456216 69456511 -148580647 - AluSx SINE Alu -20 292 1 1754 142 16 56 chr3 69456511 69456656 -148580502 - AluSx SINE Alu -162 150 1 2389 82 0 3 chr3 69456905 69457208 -148579950 - AluSp SINE Alu -11 302 1 505 156 47 23 chr3 69457211 69457339 -148579819 + L1MD1 LINE L1 6112 6242 0 32 0 0 0 chr3 69457992 69458024 -148579134 + AT_rich Low_complexity Low_complexity 1 32 0 2139 147 0 3 chr3 69458736 69459079 -148578079 - AluSx SINE Alu 0 342 1 205 176 27 0 chr3 69459250 69459324 -148577834 + (TG)n Simple_repeat Simple_repeat 2 77 0 681 76 0 0 chr3 69459372 69459464 -148577694 + (TTCC)n Simple_repeat Simple_repeat 3 94 0 532 129 24 0 chr3 69459464 69459549 -148577609 - AluSc SINE Alu -14 295 209 216 250 211 47 chr3 69461332 69461460 -148575698 + L2 LINE L2 3164 3312 -1 203 262 33 16 chr3 69461472 69461533 -148575625 - MIR SINE MIR -114 94 33 519 325 58 0 chr3 69462089 69462280 -148574878 - MIR SINE MIR -43 219 18 1666 166 47 36 chr3 69462535 69462738 -148574420 - MLT1A1 LTR MaLR 0 365 155 1997 138 7 3 chr3 69462738 69463036 -148574122 - AluSx SINE Alu -13 299 1 1666 166 47 36 chr3 69463036 69463193 -148573965 - MLT1A1 LTR MaLR -210 155 1 229 254 117 84 chr3 69463303 69463646 -148573512 + MER113 DNA MER1_type? 68 421 -100 1842 138 78 7 chr3 69463708 69463990 -148573168 + AluSx SINE Alu 1 302 -10 467 272 54 39 chr3 69464514 69464762 -148572396 - MIR SINE MIR -3 259 12 227 184 10 51 chr3 69465252 69465350 -148571808 + (TTATA)n Simple_repeat Simple_repeat 1 94 0 1231 171 35 16 chr3 69465376 69465634 -148571524 + MER58B DNA MER1_type 79 341 0 189 0 0 0 chr3 69466107 69466128 -148571030 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 1988 166 134 12 chr3 69467998 69468409 -148568749 + LOR1b LTR ERV1 1 461 0 2311 122 0 6 chr3 69469380 69469692 -148567466 - AluSx SINE Alu -2 310 1 702 244 14 36 chr3 69470352 69470573 -148566585 + MER20 DNA MER1_type 4 219 0 274 306 135 9 chr3 69471239 69471350 -148565808 - L2 LINE L2 -11 3261 3137 256 263 100 0 chr3 69471482 69471562 -148565596 - L2 LINE L2 -344 2970 2883 310 198 123 10 chr3 69471570 69471672 -148565486 + MLT1D LTR MaLR 3 122 -397 457 114 89 0 chr3 69472228 69472307 -148564851 - MER46C DNA MER2_type 0 338 253 1936 113 32 22 chr3 69472309 69472620 -148564538 - MER1B DNA MER1_type 0 339 26 435 289 37 21 chr3 69472630 69472817 -148564341 - MER46C DNA MER2_type -88 250 61 1752 161 4 4 chr3 69473627 69473907 -148563251 - AluJo SINE Alu -32 280 1 441 225 18 9 chr3 69473933 69474044 -148563114 - MER103 DNA DNA -46 120 9 243 0 0 0 chr3 69474060 69474087 -148563071 + (TG)n Simple_repeat Simple_repeat 2 28 0 351 192 0 14 chr3 69474275 69474369 -148562789 + FLAM_A SINE Alu 52 133 0 3108 145 14 6 chr3 69474560 69475057 -148562101 - MER61D LTR ERV1 0 501 1 279 277 0 0 chr3 69475844 69475909 -148561249 - MIR SINE MIR -79 183 119 1900 159 14 14 chr3 69476109 69476467 -148560691 - MER46B DNA MER2_type -3 233 1 292 229 17 42 chr3 69476652 69476770 -148560388 - Charlie5 DNA MER1_type -27 2585 2471 444 168 34 17 chr3 69476848 69476967 -148560191 - Charlie5 DNA MER1_type -148 2464 2344 511 247 62 50 chr3 69477125 69477384 -148559774 + L1MA9 LINE L1 6015 6276 -36 216 191 0 63 chr3 69478375 69478438 -148558720 + (TCTCTG)n Simple_repeat Simple_repeat 5 63 0 689 262 41 113 chr3 69478924 69479204 -148557954 - L2 LINE L2 -365 2949 2713 646 205 0 8 chr3 69479204 69479326 -148557832 - FLAM_A SINE Alu -8 125 5 689 262 41 113 chr3 69479326 69479507 -148557651 - L2 LINE L2 -601 2713 2521 186 234 143 78 chr3 69479761 69479838 -148557320 + MIR SINE MIR 147 228 -34 2138 105 3 3 chr3 69479870 69480155 -148557003 - AluSg SINE Alu -25 285 1 560 351 94 13 chr3 69480203 69480596 -148556562 + L2 LINE L2 2532 2956 -358 189 121 0 0 chr3 69480671 69480704 -148556454 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2488 26 0 30 chr3 69481108 69481413 -148555745 - AluY SINE Alu -15 296 1 264 288 14 27 chr3 69481791 69481864 -148555294 - L2 LINE L2 -42 3271 3200 200 336 26 26 chr3 69482643 69482759 -148554399 + L3 LINE CR1 1248 1363 -214 2012 152 3 3 chr3 69482930 69483232 -148553926 + AluJb SINE Alu 1 302 -10 1122 149 46 29 chr3 69483238 69483479 -148553679 + L1MA8 LINE L1 6045 6289 -2 180 0 0 0 chr3 69484390 69484410 -148552748 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1233 163 171 8 chr3 69484418 69484664 -148552494 - AluJo SINE Alu -16 286 1 377 303 114 19 chr3 69484695 69484906 -148552252 + MIR SINE MIR 29 259 -3 216 97 0 0 chr3 69485535 69485566 -148551592 + (T)n Simple_repeat Simple_repeat 1 31 0 216 333 70 31 chr3 69485812 69485941 -148551217 + L2 LINE L2 3180 3313 0 192 262 143 12 chr3 69487442 69487526 -148549632 + MIR SINE MIR 157 251 -11 25 0 0 0 chr3 69487776 69487801 -148549357 + AT_rich Low_complexity Low_complexity 1 25 0 480 121 24 0 chr3 69487811 69487894 -148549264 - L1MA8 LINE L1 -31 6260 6176 404 271 29 43 chr3 69490142 69490282 -148546876 + MIR SINE MIR 3 140 -122 2069 129 20 0 chr3 69490294 69490596 -148546562 + AluY SINE Alu 1 308 -3 240 228 11 43 chr3 69492629 69492721 -148544437 - MLT1K LTR MaLR -322 266 178 993 315 137 36 chr3 69494948 69496042 -148541116 - L2 LINE L2 -201 3071 1877 278 286 148 30 chr3 69496817 69497020 -148540138 + L2 LINE L2 2851 3077 -195 1534 165 50 53 chr3 69497051 69497354 -148539804 - AluJo SINE Alu -10 302 1 1983 123 10 3 chr3 69497463 69497755 -148539403 - AluSx SINE Alu -18 294 1 1053 204 63 0 chr3 69497797 69498003 -148539155 + MER8 DNA MER2_type 21 239 0 407 274 35 0 chr3 69498006 69498119 -148539039 - MIR SINE MIR -74 188 72 181 264 33 55 chr3 69498653 69498744 -148538414 - L3 LINE CR1 -906 671 583 579 272 37 37 chr3 69499660 69499877 -148537281 - L2 LINE L2 -4 3309 3093 249 33 0 0 chr3 69500669 69500699 -148536459 + (CA)n Simple_repeat Simple_repeat 1 30 0 411 253 55 27 chr3 69500751 69500897 -148536261 - MIR SINE MIR -55 207 58 712 186 6 37 chr3 69501078 69501239 -148535919 - MER20 DNA MER1_type -63 156 1 1114 217 109 40 chr3 69501345 69501695 -148535463 - MLT1A2 LTR MaLR 0 374 1 336 231 109 0 chr3 69501750 69501877 -148535281 + MIR SINE MIR 45 197 -50 1900 164 7 0 chr3 69502075 69502385 -148534773 - AluJb SINE Alu 0 312 1 823 98 53 0 chr3 69502490 69502623 -148534535 - L1PA13 LINE L1 -5 6158 6019 2069 154 0 0 chr3 69502632 69502924 -148534234 - AluSx SINE Alu -20 292 1 225 83 0 0 chr3 69502934 69502970 -148534188 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 1951 125 39 4 chr3 69504151 69504431 -148532727 - AluSc SINE Alu -19 290 1 500 226 54 21 chr3 69504654 69504823 -148532335 + MIR SINE MIR 33 201 -61 409 287 0 23 chr3 69505418 69505547 -148531611 + (ATGGTG)n Simple_repeat Simple_repeat 1 126 0 280 327 115 29 chr3 69505567 69505775 -148531383 - MIR SINE MIR -28 234 9 195 42 0 0 chr3 69507383 69507407 -148529751 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 511 290 72 36 chr3 69507857 69507946 -148529212 + MIR SINE MIR 59 143 -119 2393 99 0 0 chr3 69507946 69508248 -148528910 + AluSx SINE Alu 1 302 -10 511 290 72 36 chr3 69508248 69508351 -148528807 + MIR SINE MIR 143 258 -4 22 0 0 0 chr3 69508354 69508376 -148528782 + AT_rich Low_complexity Low_complexity 1 22 0 358 290 32 0 chr3 69510142 69510266 -148526892 - MER117 DNA MER1_type -40 157 30 343 276 98 44 chr3 69510558 69510761 -148526397 - MIR SINE MIR 0 262 49 234 0 0 0 chr3 69510936 69510962 -148526196 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2094 119 0 7 chr3 69510965 69511251 -148525907 - AluSx SINE Alu -28 284 1 183 42 0 0 chr3 69512795 69512819 -148524339 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2056 154 14 6 chr3 69513869 69514214 -148522944 + MER7A DNA MER2_type 1 346 0 449 281 146 25 chr3 69514323 69514604 -148522554 - MLT1K LTR MaLR -17 571 257 199 200 0 0 chr3 69514856 69514896 -148522262 - L2 LINE L2 -3 3310 3271 261 269 39 29 chr3 69515003 69515107 -148522051 + MER5B DNA MER1_type 74 178 0 199 315 54 54 chr3 69515186 69515335 -148521823 - MER5A DNA MER1_type -6 183 35 * 223 333 54 18 chr3 69515235 69515346 -148521812 + MER5A DNA MER1_type 63 177 -12 596 278 121 8 chr3 69515435 69515683 -148521475 + Charlie7 DNA MER1_type 125 400 -2212 231 254 30 101 chr3 69515692 69515861 -148521297 + Charlie7 DNA MER1_type 507 663 -1949 270 231 41 16 chr3 69515892 69516013 -148521145 + Charlie7 DNA MER1_type 2414 2537 -75 1729 171 13 13 chr3 69516102 69516407 -148520751 + AluJo SINE Alu 1 305 -7 2274 103 0 0 chr3 69516956 69517256 -148519902 - AluSx SINE Alu -12 300 1 558 273 18 0 chr3 69517595 69517760 -148519398 - L1ME3 LINE L1 -7 6155 5988 233 309 0 37 chr3 69518659 69518740 -148518418 - L2 LINE L2 -215 3057 2980 528 294 73 37 chr3 69519066 69519218 -148517940 - MIR SINE MIR -3 259 93 1972 177 57 37 chr3 69519218 69519676 -148517482 - MLT1C LTR MaLR 0 467 1 528 294 73 37 chr3 69519676 69519768 -148517390 - MIR SINE MIR -169 93 6 1313 98 128 0 chr3 69520008 69520212 -148516946 - MER30 DNA MER1_type 0 230 1 778 188 91 58 chr3 69520230 69520438 -148516720 - MER20 DNA MER1_type -4 215 1 219 220 99 44 chr3 69520970 69521061 -148516097 - L3b LINE CR1 -192 1391 1296 637 208 33 0 chr3 69522035 69522155 -148515003 - FLAM_C SINE Alu -8 125 2 419 329 118 0 chr3 69522741 69522893 -148514265 + MIR SINE MIR 20 189 -73 1833 145 20 20 chr3 69523245 69523356 -148513802 + AluJb SINE Alu 1 111 -201 2949 91 11 11 chr3 69523356 69523731 -148513427 + THE1C LTR MaLR 1 375 0 1833 145 20 20 chr3 69523731 69523922 -148513236 + AluJb SINE Alu 110 303 -9 488 190 60 80 chr3 69524077 69524277 -148512881 + L1ME3A LINE L1 5965 6160 -10 394 211 176 57 chr3 69524546 69524773 -148512385 - L1ME3 LINE L1 -205 5916 5663 2244 115 0 3 chr3 69525306 69525619 -148511539 - AluSx SINE Alu 0 312 1 2382 70 3 0 chr3 69525707 69525994 -148511164 + AluSp SINE Alu 1 288 -25 1448 192 65 11 chr3 69526367 69526643 -148510515 - AluJb SINE Alu -21 291 1 246 358 20 11 chr3 69526762 69526875 -148510283 - MIR SINE MIR -58 150 38 825 185 0 0 chr3 69527361 69527491 -148509667 - FLAM_C SINE Alu -12 131 2 373 148 0 0 chr3 69528115 69528169 -148508989 - AluJ/FLAM SINE Alu -211 91 38 1911 145 3 10 chr3 69528411 69528721 -148508437 - AluSg SINE Alu -2 308 1 22 0 0 0 chr3 69529272 69529294 -148507864 + AT_rich Low_complexity Low_complexity 1 22 0 241 245 0 0 chr3 69529341 69529394 -148507764 - L2 LINE L2 0 3272 3220 2242 109 0 7 chr3 69530447 69530751 -148506407 + AluSc SINE Alu 1 302 -7 300 140 20 0 chr3 69530894 69530944 -148506214 - MER20 DNA MER1_type 0 219 169 366 179 51 0 chr3 69531004 69531071 -148506087 - MER20 DNA MER1_type -50 169 99 3004 115 2 16 chr3 69531071 69531506 -148505652 - MER1A DNA MER1_type 0 529 101 455 178 69 0 chr3 69531524 69531625 -148505533 - MER20 DNA MER1_type -111 108 1 428 304 124 5 chr3 69531710 69531911 -148505247 + MIR SINE MIR 7 231 -31 1276 173 39 9 chr3 69532162 69532336 -148504822 - AluJo SINE Alu -11 301 117 186 71 0 0 chr3 69532336 69532364 -148504794 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1276 173 39 9 chr3 69532364 69532420 -148504738 - AluJo SINE Alu -195 117 64 232 284 60 0 chr3 69532914 69532981 -148504177 - MIR SINE MIR -82 180 110 1021 168 171 23 chr3 69533281 69533327 -148503831 - MLT2C2 LTR ERVL 0 414 376 432 0 0 0 chr3 69533327 69533375 -148503783 + (TC)n Simple_repeat Simple_repeat 1 48 0 261 119 0 0 chr3 69533374 69533416 -148503742 + (CA)n Simple_repeat Simple_repeat 1 42 0 * 1021 168 171 23 chr3 69533375 69533670 -148503488 - MLT2C2 LTR ERVL -38 376 80 207 286 110 11 chr3 69534151 69534242 -148502916 - L2 LINE L2 -1 3271 3172 461 33 0 0 chr3 69534577 69534637 -148502521 + L1PA2 LINE L1 6095 6154 -1 289 318 137 86 chr3 69535377 69535610 -148501548 + MIR SINE MIR 8 252 -10 312 27 0 0 chr3 69536299 69536336 -148500822 + (TG)n Simple_repeat Simple_repeat 2 38 0 2807 221 152 55 chr3 69536572 69537174 -148499984 + L1MC4 LINE L1 6811 7353 -689 2094 101 20 27 chr3 69537174 69537470 -148499688 - AluSx SINE Alu -18 294 1 2807 221 152 55 chr3 69537470 69537870 -148499288 + L1MC4 LINE L1 7353 7926 -116 288 0 0 0 chr3 69537870 69537902 -148499256 + (TG)n Simple_repeat Simple_repeat 2 33 0 2807 221 152 55 chr3 69537902 69537969 -148499189 + L1MC4 LINE L1 7926 7985 -57 1595 157 57 13 chr3 69538033 69538332 -148498826 - AluJo SINE Alu 0 312 1 1571 202 0 36 chr3 69539683 69539985 -148497173 + AluJo SINE Alu 1 291 -21 187 347 10 31 chr3 69540016 69540114 -148497044 - MIR SINE MIR -13 249 154 282 29 0 0 chr3 69540180 69540215 -148496943 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2295 92 3 0 chr3 69540273 69540566 -148496592 - AluSp SINE Alu -15 298 5 1582 189 0 42 chr3 69540673 69540985 -148496173 + AluJb SINE Alu 1 299 -13 369 238 131 65 chr3 69541244 69541411 -148495747 + L1MC5 LINE L1 7609 7804 -157 2106 119 20 0 chr3 69541411 69541706 -148495452 + AluSx SINE Alu 1 301 -11 369 238 131 65 chr3 69541706 69541828 -148495330 + L1MC5 LINE L1 7804 7917 -44 612 274 24 51 chr3 69543045 69543300 -148493858 - MER112 DNA MER1_type -6 254 7 358 302 93 29 chr3 69543381 69543586 -148493572 + MIR SINE MIR 1 218 -44 2258 93 0 32 chr3 69543752 69544065 -148493093 - AluSp SINE Alu -10 303 1 2455 43 0 0 chr3 69544665 69544986 -148492172 + AluY SINE Alu 1 321 0 1696 154 0 7 chr3 69545061 69545334 -148491824 - AluJo SINE Alu -41 271 1 364 300 69 0 chr3 69546515 69546645 -148490513 + MER91B DNA MER1_type 39 177 -13 24 32 0 0 chr3 69546700 69546731 -148490427 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr3 69546811 69546832 -148490326 + AT_rich Low_complexity Low_complexity 1 21 0 265 79 0 0 chr3 69546909 69546947 -148490211 + MADE1 DNA Mariner 1 38 -42 1043 84 21 0 chr3 69546947 69547089 -148490069 - BC200 scRNA scRNA -54 146 2 417 39 0 0 chr3 69547089 69547141 -148490017 + MADE1 DNA Mariner 29 80 0 183 260 0 20 chr3 69547770 69547820 -148489338 - L3 LINE CR1 -388 1189 1141 231 320 56 67 chr3 69550787 69550965 -148486193 - MIR3 SINE MIR -3 205 30 562 280 67 46 chr3 69551151 69551390 -148485768 - MIR SINE MIR 0 262 19 690 216 74 11 chr3 69551802 69551992 -148485166 + MER20 DNA MER1_type 16 217 -2 205 289 0 0 chr3 69554410 69554462 -148482696 - MIR SINE MIR -48 214 163 347 296 151 31 chr3 69554536 69554695 -148482463 + MIR SINE MIR 34 211 -51 603 0 0 0 chr3 69555753 69555820 -148481338 + (CA)n Simple_repeat Simple_repeat 2 68 0 2188 123 0 0 chr3 69555847 69556155 -148481003 + AluSx SINE Alu 1 308 -4 859 262 37 20 chr3 69556242 69556486 -148480672 + MIR SINE MIR 15 262 0 767 219 18 18 chr3 69556689 69556858 -148480300 - MER5B DNA MER1_type -6 172 4 426 261 122 28 chr3 69557705 69557885 -148479273 - MIR SINE MIR -46 216 20 386 297 57 106 chr3 69559201 69559625 -148477533 - L2 LINE L2 -4 3268 2866 200 271 0 0 chr3 69561922 69561992 -148475166 + A-rich Low_complexity Low_complexity 3 72 0 1070 177 11 0 chr3 69561998 69562184 -148474974 - MER2 DNA MER2_type -157 188 1 293 181 128 17 chr3 69562259 69562358 -148474800 - MIR SINE MIR -71 137 21 289 310 48 27 chr3 69563049 69563236 -148473922 + L1ME LINE L1 5638 5828 -293 2166 86 0 0 chr3 69563483 69563752 -148473406 - AluSg SINE Alu -7 303 35 253 213 227 0 chr3 69563773 69563848 -148473310 - MIR SINE MIR -121 141 50 228 67 0 0 chr3 69564529 69564559 -148472599 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 513 214 170 22 chr3 69564709 69564891 -148472267 + L1MC5 LINE L1 7698 7906 -55 444 303 35 26 chr3 69565448 69565676 -148471482 - L1ME LINE L1 -477 5644 5415 249 336 93 9 chr3 69565798 69565905 -148471253 + L2 LINE L2 3174 3289 -24 2218 98 16 3 chr3 69565956 69566261 -148470897 - AluSg SINE Alu -1 309 1 209 309 226 12 chr3 69569548 69569632 -148467526 - L2 LINE L2 -2 3270 3169 1171 160 10 10 chr3 69570194 69570394 -148466764 - AluJb SINE Alu -13 299 100 265 196 18 0 chr3 69571444 69571500 -148465658 - L2 LINE L2 0 3313 3257 297 265 9 153 chr3 69571635 69571739 -148465419 + LTR41 LTR ERVL 1 60 -713 7198 67 9 8 chr3 69571739 69573260 -148463898 - L1PA7 LINE L1 0 6154 4629 297 265 9 153 chr3 69573260 69573370 -148463788 + LTR41 LTR ERVL 60 184 -589 437 195 15 91 chr3 69573752 69573951 -148463207 + LTR50 LTR ERVL 598 791 -4 267 219 0 41 chr3 69575067 69575140 -148462018 - MER103 DNA DNA -47 119 50 1731 173 7 3 chr3 69575142 69575431 -148461727 - AluJo SINE Alu -14 298 9 2258 110 3 13 chr3 69575784 69576094 -148461064 - AluSx SINE Alu -5 307 1 377 326 37 5 chr3 69576099 69576289 -148460869 + MIR SINE MIR 67 262 0 27 49 0 0 chr3 69577092 69577133 -148460025 + AT_rich Low_complexity Low_complexity 1 41 0 245 273 13 0 chr3 69577488 69577565 -148459593 - L1MC/D LINE L1 -1962 5846 5769 2208 127 3 0 chr3 69577707 69578015 -148459143 + AluSx SINE Alu 1 309 -3 1646 191 17 3 chr3 69578335 69578628 -148458530 - AluJo SINE Alu -15 297 1 426 117 0 0 chr3 69579326 69579386 -148457772 - Alu SINE Alu -12 300 241 955 144 0 0 chr3 69579386 69579525 -148457633 - AluJb SINE Alu -173 139 1 288 250 56 46 chr3 69579770 69579878 -148457280 - MIR SINE MIR -134 128 20 770 214 245 12 chr3 69580132 69580455 -148456703 + L1ME3 LINE L1 5764 6161 -1 23 0 0 0 chr3 69580635 69580658 -148456500 + AT_rich Low_complexity Low_complexity 1 23 0 263 220 0 0 chr3 69581522 69581581 -148455577 + L2 LINE L2 3214 3272 0 490 281 8 103 chr3 69581669 69581848 -148455310 - MIR SINE MIR -19 243 91 954 236 4 35 chr3 69581848 69582077 -148455081 - MER58A DNA MER1_type -2 222 1 490 281 8 103 chr3 69582077 69582139 -148455019 - MIR SINE MIR -171 91 25 350 146 0 0 chr3 69582142 69582197 -148454961 - U2 snRNA snRNA -131 57 3 355 258 5 48 chr3 69582390 69582576 -148454582 + (GGGTG)n Simple_repeat Simple_repeat 1 178 0 266 145 32 32 chr3 69582823 69582885 -148454273 - MER58A DNA MER1_type -9 98 37 288 249 147 52 chr3 69582975 69583149 -148454009 - MIR SINE MIR -60 148 4 1976 126 46 0 chr3 69583195 69583480 -148453678 + AluSg SINE Alu 1 298 -12 365 277 0 65 chr3 69584170 69584325 -148452833 + MER112 DNA MER1_type 110 254 -6 186 175 0 25 chr3 69584832 69584872 -148452286 - MIR SINE MIR -89 119 81 335 360 18 12 chr3 69585020 69585184 -148451974 - L2 LINE L2 -12 3260 3096 25 0 0 0 chr3 69585717 69585742 -148451416 + AT_rich Low_complexity Low_complexity 1 25 0 212 327 40 13 chr3 69586246 69586396 -148450762 + MIR SINE MIR 20 173 -89 443 250 62 21 chr3 69587196 69587340 -148449818 + L1ME3 LINE L1 5997 6146 -16 881 258 91 62 chr3 69587422 69587627 -148449531 + L1ME3A LINE L1 5463 5661 -509 1606 153 38 14 chr3 69587627 69587914 -148449244 + AluJb SINE Alu 1 294 -18 1812 137 34 31 chr3 69587921 69588214 -148448944 + AluSx SINE Alu 1 294 -18 881 258 91 62 chr3 69588214 69588384 -148448774 + L1ME3A LINE L1 5666 5857 -313 1738 144 68 0 chr3 69588708 69589000 -148448158 + AluJb SINE Alu 1 312 0 1038 233 9 9 chr3 69589161 69589376 -148447782 - MER58A DNA MER1_type -9 215 1 639 231 151 103 chr3 69589846 69590157 -148447001 - MER102b DNA MER1_type -1 340 15 393 208 0 0 chr3 69590614 69590691 -148446467 + MER58 DNA MER1_type 1 77 -138 195 240 135 31 chr3 69590967 69591063 -148446095 - MIR SINE MIR -129 133 28 997 197 28 23 chr3 69591201 69591419 -148445739 + MER20 DNA MER1_type 1 219 0 423 253 51 13 chr3 69591419 69591577 -148445581 - MER113 DNA MER1_type? -357 164 1 4248 126 28 25 chr3 69592431 69592632 -148444526 + L1MB2 LINE L1 5443 5642 -529 2281 161 30 21 chr3 69592632 69593062 -148444096 + Tigger2a DNA MER2_type 1 434 0 4248 126 28 25 chr3 69593062 69593580 -148443578 + L1MB2 LINE L1 5642 6164 -7 198 118 0 0 chr3 69594004 69594038 -148443120 + (T)n Simple_repeat Simple_repeat 1 34 0 509 277 56 10 chr3 69594727 69594922 -148442236 - Charlie8 DNA MER1_type -2142 275 72 235 240 0 0 chr3 69595278 69595328 -148441830 - L2 LINE L2 -12 3260 3211 636 233 34 62 chr3 69595338 69595514 -148441644 + MER45A DNA AcHobo 1 171 -7 314 319 71 6 chr3 69595533 69595702 -148441456 - MIR SINE MIR -56 206 27 724 110 0 28 chr3 69595970 69596079 -148441079 + FLAM_C SINE Alu 2 107 -36 781 233 31 0 chr3 69596227 69596420 -148440738 - MIR SINE MIR 0 262 64 532 269 55 6 chr3 69596558 69596740 -148440418 - MIR SINE MIR -23 239 49 217 313 108 15 chr3 69596785 69596980 -148440178 - L2 LINE L2 -222 3050 2838 2139 118 20 0 chr3 69597809 69598105 -148439053 + AluSx SINE Alu 2 303 -9 1271 245 97 34 chr3 69601616 69602389 -148434769 - L2 LINE L2 -1 3312 2490 333 316 29 6 chr3 69602662 69602860 -148434298 - MLT1K LTR MaLR -169 419 187 272 278 65 9 chr3 69603033 69603141 -148434017 + MIR SINE MIR 106 219 -43 1130 224 14 5 chr3 69603176 69603395 -148433763 + MER58A DNA MER1_type 1 221 -3 575 296 70 0 chr3 69604343 69604529 -148432629 + MIR SINE MIR 49 247 -15 309 68 0 0 chr3 69604720 69604764 -148432394 + (ATG)n Simple_repeat Simple_repeat 2 45 0 242 305 108 23 chr3 69604895 69605086 -148432072 - MIR SINE MIR -48 214 12 21 0 0 0 chr3 69605816 69605837 -148431321 + AT_rich Low_complexity Low_complexity 1 21 0 1152 215 23 0 chr3 69605858 69606077 -148431081 - MER58A DNA MER1_type 0 224 1 639 247 24 0 chr3 69606650 69606816 -148430342 + MER104 DNA Tc2 4 173 -7 250 333 83 8 chr3 69606883 69607015 -148430143 - L2 LINE L2 -1 3312 3171 2118 111 34 7 chr3 69607062 69607359 -148429799 + AluSg SINE Alu 1 305 -5 456 274 61 18 chr3 69607376 69607658 -148429500 - L2 LINE L2 -274 3039 2697 1904 116 11 18 chr3 69607666 69607950 -148429208 + AluSx SINE Alu 1 282 -30 225 0 0 0 chr3 69607954 69607979 -148429179 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1913 134 23 10 chr3 69608458 69608757 -148428401 - AluSx SINE Alu -9 303 1 356 291 169 5 chr3 69609082 69609271 -148427887 + L2 LINE L2 2833 3052 -261 337 184 126 11 chr3 69609395 69609482 -148427676 - L2 LINE L2 -341 2972 2876 452 219 247 14 chr3 69609558 69609704 -148427454 + MER5A DNA MER1_type 2 181 -8 24 0 0 0 chr3 69610718 69610742 -148426416 + AT_rich Low_complexity Low_complexity 1 24 0 546 256 60 25 chr3 69611030 69611229 -148425929 - MIR SINE MIR -24 238 33 1198 186 89 58 chr3 69611275 69611566 -148425592 + AluJo SINE Alu 2 301 -1 407 253 11 0 chr3 69612059 69612146 -148425012 + MER58 DNA MER1_type 2 89 -2331 * 912 209 73 8 chr3 69612143 69612377 -148424781 + MER58 DNA MER1_type 2163 2411 -9 599 250 36 12 chr3 69612463 69612631 -148424527 - MIR SINE MIR -24 238 67 440 193 0 70 chr3 69613557 69613671 -148423487 - MIR SINE MIR -32 230 125 273 252 217 0 chr3 69613682 69613797 -148423361 - MIR SINE MIR -114 148 9 476 354 86 12 chr3 69613845 69614088 -148423070 - MIR SINE MIR 0 262 2 223 336 128 40 chr3 69614182 69614408 -148422750 + L3 LINE CR1 1117 1362 -215 354 286 51 0 chr3 69615412 69615510 -148421648 - MIR SINE MIR -138 124 22 189 301 32 65 chr3 69615676 69615769 -148421389 + MIR3 SINE MIR 87 176 -32 374 199 15 29 chr3 69616933 69617046 -148420112 + MIR SINE MIR 68 175 -63 473 219 5 56 chr3 69617056 69617244 -148419914 + MIR SINE MIR 8 252 -10 212 241 19 0 chr3 69617248 69617302 -148419856 + MIR SINE MIR 198 252 -10 211 250 0 0 chr3 69617794 69617846 -148419312 + L2 LINE L2 2921 2972 -341 339 286 16 32 chr3 69617903 69618029 -148419129 + MIR SINE MIR 10 133 -75 493 254 0 16 chr3 69618335 69618461 -148418697 + MER103 DNA DNA 1 124 -42 1726 158 10 24 chr3 69619038 69619335 -148417823 + AluJo SINE Alu 6 298 -14 216 0 0 0 chr3 69620855 69620879 -148416279 + (T)n Simple_repeat Simple_repeat 1 24 0 478 269 94 61 chr3 69620951 69621163 -148415995 + MIR SINE MIR 1 219 -43 213 65 0 0 chr3 69621211 69621242 -148415916 + (TTG)n Simple_repeat Simple_repeat 1 31 0 258 152 43 0 chr3 69621372 69621418 -148415740 - Charlie5 DNA MER1_type -2545 67 20 444 268 14 113 chr3 69622740 69622827 -148414331 + MIR SINE MIR 5 99 -163 2046 111 194 8 chr3 69622827 69623188 -148413970 - MSTA LTR MaLR 0 428 1 444 268 14 113 chr3 69623188 69623384 -148413774 + MIR SINE MIR 99 260 -2 758 280 0 24 chr3 69623645 69623856 -148413302 - MIR SINE MIR -13 249 44 243 321 0 25 chr3 69623922 69624003 -148413155 - L2 LINE L2 -555 2759 2681 671 297 62 24 chr3 69624927 69625217 -148411941 - L3b LINE CR1 -163 1420 1120 312 27 0 0 chr3 69625735 69625772 -148411386 + (T)n Simple_repeat Simple_repeat 1 37 0 2261 114 3 16 chr3 69625858 69626174 -148410984 - AluSx SINE Alu 0 312 1 1710 179 24 0 chr3 69626224 69626521 -148410637 - AluJo SINE Alu -8 304 1 409 298 187 10 chr3 69626643 69626841 -148410317 - MIR SINE MIR -1 261 29 610 266 26 57 chr3 69626913 69627142 -148410016 - MIR SINE MIR -8 254 33 3539 148 130 45 chr3 69628053 69628814 -148408344 - LTR1B LTR ERV1 0 826 1 1643 240 91 20 chr3 69630318 69630856 -148406302 - L1ME3A LINE L1 -2 6168 5593 436 309 6 6 chr3 69631317 69631498 -148405660 + L1MC4 LINE L1 7692 7872 -170 477 247 0 82 chr3 69631528 69631710 -148405448 + (TG)n Simple_repeat Simple_repeat 2 168 0 2665 54 0 10 chr3 69632872 69633186 -148403972 - AluY SINE Alu 0 311 1 210 271 82 0 chr3 69634079 69634164 -148402994 - MIR SINE MIR -78 184 93 255 133 0 22 chr3 69634516 69634561 -148402597 - MER58B DNA MER1_type -1 340 297 3600 196 30 46 chr3 69634692 69635490 -148401668 - L1MB7 LINE L1 0 6184 5400 422 182 0 0 chr3 69635912 69635989 -148401169 - MER58B DNA MER1_type 0 341 265 1410 169 83 46 chr3 69635992 69636317 -148400841 + MER2 DNA MER2_type 9 345 0 266 279 47 35 chr3 69636317 69636403 -148400755 - MER58B DNA MER1_type -81 260 174 268 264 0 0 chr3 69636404 69636457 -148400701 - MER58B DNA MER1_type -286 55 3 751 188 0 0 chr3 69638320 69638453 -148398705 + FLAM_A SINE Alu 1 133 0 399 208 128 0 chr3 69638556 69638681 -148398477 - L2 LINE L2 -5 3308 3168 197 328 99 55 chr3 69638872 69639274 -148397884 - L2 LINE L2 -436 2878 2459 * 331 334 0 0 chr3 69639265 69639399 -148397759 - MIR SINE MIR -67 141 34 315 271 0 0 chr3 69639730 69639815 -148397343 + L2 LINE L2 3188 3272 0 282 331 78 7 chr3 69639825 69639967 -148397191 + MIR SINE MIR 1 152 -110 1668 136 7 81 chr3 69639967 69640276 -148396882 + AluJb SINE Alu 1 286 -26 297 164 9 109 chr3 69640695 69640805 -148396353 + MER5A DNA MER1_type 47 145 -44 424 309 25 34 chr3 69640844 69641048 -148396110 + MIR SINE MIR 28 229 -33 24 0 0 0 chr3 69641076 69641100 -148396058 + AT_rich Low_complexity Low_complexity 1 24 0 1352 246 64 5 chr3 69642290 69642681 -148394477 - Charlie4a DNA MER1_type -14 494 81 533 264 116 25 chr3 69643109 69643345 -148393813 - MER102b DNA MER1_type -1091 337 71 240 35 0 0 chr3 69643345 69643374 -148393784 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 533 264 116 25 chr3 69643374 69643413 -148393745 - MER102b DNA MER1_type -1357 71 37 2607 149 33 4 chr3 69643587 69644037 -148393121 + L1MB3 LINE L1 5706 6168 -15 2103 137 3 3 chr3 69644037 69644343 -148392815 - AluSc SINE Alu -3 306 1 323 271 135 19 chr3 69644536 69644743 -148392415 + L1MEc LINE L1 1896 2126 -4270 762 221 47 59 chr3 69644748 69645001 -148392157 + L1ME3 LINE L1 5910 6159 -3 847 208 55 0 chr3 69645050 69645233 -148391925 + MER58B DNA MER1_type 1 193 -148 448 263 108 3 chr3 69645783 69645965 -148391193 - MIR SINE MIR 0 262 55 405 250 105 26 chr3 69646037 69646189 -148390969 + MIR SINE MIR 2 165 -97 259 333 0 0 chr3 69647301 69647394 -148389764 + GA-rich Low_complexity Low_complexity 2 94 0 203 310 14 0 chr3 69648233 69648304 -148388854 + (CTAG)n Simple_repeat Simple_repeat 3 74 0 876 170 0 0 chr3 69649259 69649535 -148387623 + (TGGA)n Simple_repeat Simple_repeat 1 276 0 238 296 123 56 chr3 69652549 69652728 -148384430 + L2 LINE L2 2834 3024 -248 1448 228 89 16 chr3 69652855 69653104 -148384054 - Charlie4a DNA MER1_type -1456 505 276 1947 169 102 22 chr3 69653104 69653506 -148383652 - Tigger2a DNA MER2_type 0 434 1 1448 228 89 16 chr3 69653506 69653704 -148383454 - Charlie4a DNA MER1_type -1685 276 25 281 314 33 8 chr3 69653754 69653875 -148383283 + L2 LINE L2 3134 3257 -15 2279 69 11 4 chr3 69653890 69654186 -148382972 - AluSc SINE Alu 0 298 1 2230 115 7 7 chr3 69654515 69654820 -148382338 + AluSx SINE Alu 1 305 -7 202 180 20 20 chr3 69655034 69655084 -148382074 + GA-rich Low_complexity Low_complexity 2 51 0 259 311 17 84 chr3 69656793 69656912 -148380246 - Charlie8 DNA MER1_type -2137 280 170 212 155 28 127 chr3 69657044 69657115 -148380043 - MIR SINE MIR -76 186 123 1952 164 3 3 chr3 69657786 69658098 -148379060 - AluJb SINE Alu 0 312 1 205 377 9 0 chr3 69658134 69658248 -148378910 - L2 LINE L2 -433 2881 2767 501 242 37 42 chr3 69658268 69658458 -148378700 - L2 LINE L2 -5 3308 3120 1387 176 71 25 chr3 69658584 69658907 -148378251 + MER58B DNA MER1_type 3 340 -1 1820 171 3 7 chr3 69659323 69659615 -148377543 + AluJb SINE Alu 1 291 -21 297 189 40 117 chr3 69659682 69659859 -148377299 + HAL1b LINE L1 1194 6118 -3 2130 90 3 72 chr3 69660538 69660870 -148376288 - AluSc SINE Alu 0 309 1 455 167 0 11 chr3 69660899 69660989 -148376169 + MER5B DNA MER1_type 1 89 -89 186 233 0 50 chr3 69661037 69661097 -148376061 + MER5B DNA MER1_type 122 178 0 244 341 15 54 chr3 69661109 69661370 -148375788 - L2 LINE L2 -639 2675 2425 2286 101 10 0 chr3 69661405 69661703 -148375455 + AluSx SINE Alu 1 301 -11 2134 74 20 34 chr3 69661891 69662187 -148374971 - AluY SINE Alu -19 292 1 601 239 92 60 chr3 69662252 69662470 -148374688 - MIR SINE MIR -31 231 7 182 250 54 0 chr3 69663874 69663930 -148373228 + L2 LINE L2 3190 3248 -65 1256 238 108 11 chr3 69663958 69664235 -148372923 - MLT1E LTR MaLR -7 586 283 628 200 0 16 chr3 69664237 69664362 -148372796 - AluJ SINE Alu -69 243 121 24 32 0 0 chr3 69664670 69664701 -148372457 + AT_rich Low_complexity Low_complexity 1 31 0 849 118 59 15 chr3 69665657 69665792 -148371366 - AluJ SINE Alu -171 141 1 523 279 0 22 chr3 69665798 69665944 -148371214 - MLT1E LTR MaLR -415 140 1 23 0 0 0 chr3 69666615 69666638 -148370520 + AT_rich Low_complexity Low_complexity 1 23 0 263 188 156 0 chr3 69669540 69669604 -148367554 - MIR SINE MIR -72 190 117 1905 153 68 44 chr3 69670301 69670686 -148366472 - MSTD LTR MaLR 0 396 3 351 254 36 22 chr3 69671295 69671433 -148365725 - MLT1H LTR MaLR -391 158 19 926 167 32 77 chr3 69672042 69672263 -148364895 - MER20 DNA MER1_type -8 211 1 716 212 63 45 chr3 69672602 69672824 -148364334 - L1MC5 LINE L1 -30 7931 7706 2192 127 7 0 chr3 69674637 69674928 -148362230 + AluSx SINE Alu 1 293 -19 535 168 152 24 chr3 69674970 69675095 -148362063 - MLT1A1 LTR MaLR -224 141 1 213 296 153 0 chr3 69675231 69675329 -148361829 - L2 LINE L2 0 3313 3201 655 321 109 28 chr3 69675345 69675741 -148361417 + L2 LINE L2 2886 3313 0 2015 136 10 3 chr3 69675925 69676235 -148360923 + AluJb SINE Alu 1 312 0 537 299 68 51 chr3 69676566 69676977 -148360181 - LTR16B LTR ERVL -12 452 35 430 60 0 0 chr3 69677422 69677472 -148359686 + HSMAR1 DNA Mariner 672 721 -566 2401 93 76 15 chr3 69677499 69677842 -148359316 + THE1B LTR MaLR 1 364 0 6948 118 27 4 chr3 69678332 69679325 -148357833 - HSMAR1 DNA Mariner -270 1017 2 1947 145 16 0 chr3 69679374 69679678 -148357480 + AluSq SINE Alu 1 309 -4 227 121 0 0 chr3 69679702 69679735 -148357423 + U2 snRNA snRNA 2 34 -154 1900 113 22 0 chr3 69680120 69680394 -148356764 + AluSx SINE Alu 1 280 -32 823 233 167 35 chr3 69681126 69681502 -148355656 + L1ME3 LINE L1 5555 5990 -172 2114 107 3 16 chr3 69681502 69681810 -148355348 + AluSx SINE Alu 1 304 -8 823 233 167 35 chr3 69681810 69681905 -148355253 + L1ME3 LINE L1 5990 6071 -91 1224 157 43 0 chr3 69732518 69732728 -148304430 - MER20 DNA MER1_type 0 219 1 244 342 92 0 chr3 69733604 69733703 -148303455 - MIR SINE MIR -74 134 41 593 259 112 28 chr3 69734002 69734288 -148302870 - L1ME LINE L1 -533 5637 5328 448 269 93 100 chr3 69734421 69735907 -148301251 - L1ME LINE L1 -989 5157 3682 494 244 87 30 chr3 69736031 69736231 -148300927 - MIR SINE MIR 0 262 65 236 207 0 110 chr3 69736239 69736321 -148300837 + MIR SINE MIR 184 256 -6 332 241 200 20 chr3 69736456 69736651 -148300507 - L1MC5 LINE L1 -78 7883 7654 2333 91 0 0 chr3 69736659 69736956 -148300202 - AluSg SINE Alu -13 297 1 608 305 48 79 chr3 69737044 69737612 -148299546 - L1ME LINE L1 -2990 3156 2607 546 206 84 0 chr3 69739186 69739317 -148297841 - Charlie1 DNA MER1_type 0 2761 2620 494 190 35 43 chr3 69739319 69739435 -148297723 - Charlie1 DNA MER1_type -2564 197 83 216 373 148 7 chr3 69740141 69740283 -148296875 - L2 LINE L2 -14 3258 3097 193 317 24 0 chr3 69741898 69741980 -148295178 + MIR SINE MIR 48 131 -131 1258 195 79 32 chr3 69742819 69743096 -148294062 + AluJo SINE Alu 1 290 -22 664 218 73 50 chr3 69744244 69744505 -148292653 - L1MA9 LINE L1 -59 6253 5987 * 2652 165 43 4 chr3 69744500 69745008 -148292150 - L1MA9 LINE L1 -531 5781 5254 209 288 62 38 chr3 69745035 69745115 -148292043 - MIR SINE MIR -123 139 58 642 225 96 38 chr3 69747108 69747317 -148289841 + MIR SINE MIR 5 225 -37 21 36 0 0 chr3 69749009 69749037 -148288121 + AT_rich Low_complexity Low_complexity 1 28 0 817 193 112 16 chr3 69749599 69749786 -148287372 - AluJo SINE Alu -26 286 82 1927 123 25 0 chr3 69752510 69752786 -148284372 - AluSx SINE Alu -29 283 1 25 83 0 0 chr3 69753038 69753098 -148284060 + AT_rich Low_complexity Low_complexity 1 60 0 1822 149 3 29 chr3 69753232 69753540 -148283618 - AluJb SINE Alu -12 300 1 1380 169 159 3 chr3 69755247 69755537 -148281621 + MER44D DNA MER2_type 1 605 -4 419 176 11 0 chr3 69758384 69758475 -148278683 + (TG)n Simple_repeat Simple_repeat 2 93 0 794 192 103 0 chr3 69758747 69758971 -148278187 + L1MB7 LINE L1 4188 4434 -1712 312 96 39 0 chr3 69759007 69759059 -148278099 + L1MB7 LINE L1 4672 4725 -1421 * 4569 152 37 24 chr3 69759054 69759984 -148277174 + L1MB7 LINE L1 5184 6124 -60 1695 153 20 36 chr3 69759984 69760149 -148277009 - AluSx SINE Alu -16 296 137 2467 64 3 0 chr3 69760149 69760445 -148276713 - AluY SINE Alu -14 297 1 1695 153 20 36 chr3 69760445 69760580 -148276578 - AluSx SINE Alu -175 137 1 4569 152 37 24 chr3 69760580 69760629 -148276529 + L1MB7 LINE L1 6124 6171 -13 234 270 79 11 chr3 69763113 69763202 -148273956 - MARNA DNA Mariner -160 426 332 1351 101 78 18 chr3 69764937 69765154 -148272004 - MER30 DNA MER1_type 0 230 1 1814 137 13 43 chr3 69766485 69766785 -148270373 - AluJo SINE Alu -21 291 1 250 331 65 16 chr3 69766841 69766965 -148270193 + MIR SINE MIR 37 166 -96 211 263 150 0 chr3 69768323 69768403 -148268755 - MIR SINE MIR -109 153 62 246 323 99 31 chr3 69768697 69768889 -148268269 - MIR SINE MIR -52 210 6 180 0 0 0 chr3 69769702 69769722 -148267436 + (TTG)n Simple_repeat Simple_repeat 2 21 0 240 250 180 0 chr3 69771968 69772068 -148265090 - MIR SINE MIR -21 241 124 623 292 133 0 chr3 69772473 69772699 -148264459 - MIR SINE MIR -6 256 1 1426 201 46 14 chr3 69772807 69773091 -148264067 - AluJo SINE Alu -19 293 1 1312 179 144 12 chr3 69773095 69773352 -148263806 - AluJo SINE Alu -11 291 1 539 254 56 7 chr3 69774193 69774335 -148262823 + MIR SINE MIR 99 247 -15 294 290 65 0 chr3 69774336 69774429 -148262729 + MIR SINE MIR 164 262 0 * 370 292 102 69 chr3 69774385 69774601 -148262557 - MIR SINE MIR -33 229 7 447 291 22 15 chr3 69777449 69777583 -148259575 + MIR SINE MIR 53 187 -75 244 265 142 29 chr3 69779001 69779170 -148257988 - MIR SINE MIR -50 212 27 496 261 192 20 chr3 69779855 69780058 -148257100 - L2 LINE L2 -3 3310 3073 22 0 0 0 chr3 69782404 69782426 -148254732 + AT_rich Low_complexity Low_complexity 1 22 0 724 289 157 25 chr3 69783715 69784295 -148252863 - L2 LINE L2 -56 3257 2610 979 88 0 68 chr3 69784359 69784506 -148252652 - AluSg/x SINE Alu -16 293 157 213 226 0 19 chr3 69784644 69784697 -148252461 - L2 LINE L2 0 3313 3262 2059 108 29 26 chr3 69785050 69785357 -148251801 + AluSg SINE Alu 3 310 0 23 33 0 0 chr3 69786244 69786274 -148250884 + AT_rich Low_complexity Low_complexity 1 30 0 243 0 0 0 chr3 69787707 69787734 -148249424 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 329 303 172 22 chr3 69789768 69790035 -148247123 + L1MC4a LINE L1 4950 5256 -890 1368 273 118 34 chr3 69790047 69790761 -148246397 + L1MC4a LINE L1 5293 6066 -1742 212 297 47 40 chr3 69791482 69791630 -148245528 + MIR SINE MIR 3 151 -111 * 612 264 93 23 chr3 69791624 69791840 -148245318 - MIR SINE MIR -26 236 6 22 35 0 0 chr3 69792679 69792708 -148244450 + AT_rich Low_complexity Low_complexity 1 29 0 185 233 68 68 chr3 69793833 69793906 -148243252 - MIR3 SINE MIR -5 203 131 423 310 126 0 chr3 69795146 69795320 -148241838 - MIR SINE MIR -66 196 1 425 200 264 32 chr3 69795431 69795556 -148241602 - FRAM SINE Alu -12 154 1 1210 170 29 15 chr3 69795604 69795810 -148241348 - AluJo SINE Alu -92 220 12 22 0 0 0 chr3 69796880 69796902 -148240256 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 69799880 69799901 -148237257 + AT_rich Low_complexity Low_complexity 1 21 0 797 304 35 64 chr3 69800783 69801129 -148236029 + MER102b DNA MER1_type 1 336 -5 602 266 100 25 chr3 69802263 69802504 -148234654 + MIR SINE MIR 1 259 -3 2232 121 7 0 chr3 69802647 69802954 -148234204 + AluSx SINE Alu 1 309 -3 1099 290 85 10 chr3 69804031 69804441 -148232717 + L2 LINE L2 2041 2481 -833 535 222 78 17 chr3 69804456 69804636 -148232522 + L1ME LINE L1 5298 5488 -678 * 1185 223 110 40 chr3 69804606 69805104 -148232054 + L1MCa LINE L1 1122 1654 -4772 2488 29 0 0 chr3 69805593 69805874 -148231284 - AluYb8 SINE Alu 0 318 38 249 33 0 0 chr3 69806852 69806882 -148230276 + (CA)n Simple_repeat Simple_repeat 2 31 0 2018 154 0 0 chr3 69806902 69807201 -148229957 + AluSx SINE Alu 3 301 -11 187 424 0 11 chr3 69807329 69807421 -148229737 - L2 LINE L2 -221 3051 2961 7509 83 25 1 chr3 69807617 69809480 -148227678 + L1PA8 LINE L1 4273 6172 0 187 273 0 18 chr3 69810344 69810399 -148226759 - MIR SINE MIR -50 212 159 1969 171 12 3 chr3 69811232 69811577 -148225581 - MER7A DNA MER2_type 0 346 1 843 293 147 21 chr3 69812019 69812610 -148224548 - L2 LINE L2 -41 3272 2616 336 314 78 44 chr3 69812946 69813093 -148224065 + Charlie8 DNA MER1_type 2 159 -171 2363 66 7 3 chr3 69813093 69813395 -148223763 + AluY SINE Alu 1 303 -8 336 314 78 44 chr3 69813395 69813451 -148223707 + Charlie8 DNA MER1_type 159 212 -118 2313 92 3 9 chr3 69815276 69815591 -148221567 + AluSp SINE Alu 1 313 0 344 200 0 0 chr3 69816511 69816566 -148220592 + Tigger5 DNA MER2_type 1 55 -2268 516 198 11 0 chr3 69816571 69816662 -148220496 + Tigger5 DNA MER2_type 2232 2323 0 493 204 39 19 chr3 69816684 69816787 -148220371 + MER39 LTR ERV1 1 105 -602 843 154 0 0 chr3 69816789 69816925 -148220233 - FLAM_C SINE Alu -1 142 7 1079 204 100 62 chr3 69816941 69817373 -148219785 + LTR48 LTR ERV1 64 700 -87 2040 110 76 17 chr3 69817373 69817727 -148219431 - THE1C LTR MaLR 0 375 1 1079 204 100 62 chr3 69817727 69817819 -148219339 + LTR48 LTR ERV1 700 787 0 537 215 135 43 chr3 69819005 69819168 -148217990 + MIR SINE MIR 71 248 -14 806 289 107 22 chr3 69820202 69820566 -148216592 - L2 LINE L2 0 3313 2919 285 199 372 8 chr3 69823236 69823360 -148213798 + MER45A DNA AcHobo 1 178 0 22 0 0 0 chr3 69824648 69824670 -148212488 + AT_rich Low_complexity Low_complexity 1 22 0 293 300 0 0 chr3 69826309 69826382 -148210776 - L2 LINE L2 -1 3294 3202 1586 157 3 60 chr3 69826523 69826822 -148210336 + AluJo SINE Alu 1 282 -30 331 315 123 15 chr3 69827190 69827644 -148209514 + L1M4 LINE L1 4046 4548 -1598 2306 66 31 3 chr3 69828174 69828463 -148208695 + AluSc SINE Alu 1 297 -12 1474 203 91 67 chr3 69829058 69829640 -148207518 - L1MC5 LINE L1 -36 7925 7330 1234 172 77 14 chr3 69829642 69829927 -148207231 - MER33 DNA MER1_type -2 322 20 1785 230 32 48 chr3 69829989 69830589 -148206569 - L1MC5 LINE L1 -723 7238 6649 278 225 152 73 chr3 69830787 69830938 -148206220 - L1MC4a LINE L1 -1451 6357 6195 222 301 78 58 chr3 69831137 69831240 -148205918 - L2 LINE L2 0 3272 3168 185 262 0 0 chr3 69831503 69831545 -148205613 + L2 LINE L2 3272 3313 0 21 0 0 0 chr3 69833235 69833256 -148203902 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr3 69835557 69835578 -148201580 + (TG)n Simple_repeat Simple_repeat 2 22 0 186 43 0 0 chr3 69836662 69836685 -148200473 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr3 69837884 69837905 -148199253 + AT_rich Low_complexity Low_complexity 1 21 0 255 31 0 0 chr3 69838691 69838723 -148198435 + (GA)n Simple_repeat Simple_repeat 1 32 0 586 193 9 132 chr3 69840186 69840399 -148196759 - L2 LINE L2 0 3313 3127 2909 165 47 4 chr3 69840613 69841103 -148196055 + L1MB3 LINE L1 5671 6181 -2 181 129 32 0 chr3 69841343 69841374 -148195784 + MIR SINE MIR 54 85 -123 885 148 49 0 chr3 69841408 69841550 -148195608 + MER3 DNA MER1_type 7 155 -54 * 1049 154 87 17 chr3 69841542 69841716 -148195442 + MER3 DNA MER1_type 2244 2404 -181 2682 111 22 8 chr3 69841716 69842086 -148195072 + THE1C LTR MaLR 1 375 0 1049 154 87 17 chr3 69842086 69842193 -148194965 + MER3 DNA MER1_type 2404 2584 -1 2035 127 19 10 chr3 69842240 69842568 -148194590 - AluSx SINE Alu 0 312 1 21 0 0 0 chr3 69842657 69842678 -148194480 + AT_rich Low_complexity Low_complexity 1 21 0 837 138 0 0 chr3 69842743 69842859 -148194299 + FLAM_C SINE Alu 3 118 -25 2546 52 0 3 chr3 69842995 69843301 -148193857 + AluY SINE Alu 1 305 -6 188 308 51 0 chr3 69843573 69843651 -148193507 - MIR SINE MIR -98 164 83 215 31 31 0 chr3 69843929 69843961 -148193197 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 2256 270 156 21 chr3 69844523 69844668 -148192490 + L2 LINE L2 1848 1972 -1341 1788 155 27 10 chr3 69844668 69844965 -148192193 - AluJo SINE Alu -9 303 2 2256 270 156 21 chr3 69844965 69845942 -148191216 + L2 LINE L2 1972 3164 -149 2561 122 120 5 chr3 69845942 69846326 -148190832 + MSTA LTR MaLR 1 428 0 2256 270 156 21 chr3 69846326 69846498 -148190660 + L2 LINE L2 3164 3312 -1 577 317 61 36 chr3 69846633 69847024 -148190134 + L1MC4a LINE L1 5337 5737 -2071 395 148 0 0 chr3 69847116 69847177 -148189981 + U3 snRNA snRNA 15 75 -142 267 254 40 119 chr3 69847200 69847377 -148189781 + L1MC4a LINE L1 5768 5930 -1878 324 358 97 6 chr3 69847587 69847763 -148189395 - L2 LINE L2 -356 2958 2767 2019 133 7 3 chr3 69847861 69848161 -148188997 - AluSx SINE Alu -11 301 1 2022 125 3 19 chr3 69848401 69848712 -148188446 + AluSx SINE Alu 2 307 -5 2035 131 3 19 chr3 69848722 69849036 -148188122 + AluSx SINE Alu 1 309 -3 348 296 143 48 chr3 69849100 69849458 -148187700 - L2 LINE L2 -1 3312 2921 2023 118 38 3 chr3 69849506 69849795 -148187363 + AluSx SINE Alu 1 299 -13 274 231 28 93 chr3 69850270 69850378 -148186780 + MER112 DNA MER1_type 1 101 -159 1851 117 62 52 chr3 69850400 69850708 -148186450 + AluSx SINE Alu 1 311 -1 606 231 42 71 chr3 69850746 69850805 -148186353 + L1MC5 LINE L1 7604 7663 -298 1547 166 54 18 chr3 69850805 69851083 -148186075 - AluJo SINE Alu -24 288 1 606 231 42 71 chr3 69851083 69851360 -148185798 + L1MC5 LINE L1 7663 7930 -31 2038 142 0 7 chr3 69851363 69851666 -148185492 + AluSx SINE Alu 1 301 -11 2268 110 7 0 chr3 69851676 69851985 -148185173 + AluSq SINE Alu 1 311 -2 717 211 0 0 chr3 69853076 69853204 -148183954 + MLT1L LTR MaLR 149 276 -339 374 200 158 0 chr3 69853353 69853448 -148183710 + MLT1L LTR MaLR 506 615 0 2060 124 0 0 chr3 69853574 69853865 -148183293 + AluSx SINE Alu 1 291 -21 249 160 60 0 chr3 69854737 69854787 -148182371 + L2 LINE L2 3257 3309 -4 22 0 0 0 chr3 69856256 69856278 -148180880 + AT_rich Low_complexity Low_complexity 1 22 0 1949 134 30 17 chr3 69856926 69857224 -148179934 + AluSx SINE Alu 1 302 -10 886 247 106 48 chr3 69857340 69857942 -148179216 - L2 LINE L2 -3 3310 2682 273 255 0 133 chr3 69857924 69858022 -148179136 - L2 LINE L2 -10 3262 3178 * 227 135 77 39 chr3 69858022 69858074 -148179084 - MER4E LTR ERV1 -436 330 277 425 301 37 89 chr3 69858106 69858432 -148178726 - L2 LINE L2 -174 3139 2831 413 259 159 5 chr3 69858995 69859184 -148177974 - L2 LINE L2 -19 3294 3077 2448 84 0 0 chr3 69860652 69860961 -148176197 - AluY SINE Alu -2 309 1 225 313 0 12 chr3 69861452 69861535 -148175623 - LTR67 LTR ERVL -17 540 459 291 268 0 24 chr3 69861815 69861897 -148175261 - MLT1K LTR MaLR -496 92 13 552 251 117 29 chr3 69862592 69862831 -148174327 + L2 LINE L2 3053 3312 -1 238 230 58 81 chr3 69862933 69863020 -148174138 - L2 LINE L2 -37 3276 3192 788 232 0 27 chr3 69863190 69863375 -148173783 + L1PB4 LINE L1 5974 6153 -3 219 343 93 9 chr3 69863421 69863529 -148173629 - MIR SINE MIR -121 141 25 530 324 18 13 chr3 69863693 69863917 -148173241 - MIR SINE MIR -9 253 30 204 391 22 0 chr3 69864008 69864100 -148173058 + L2 LINE L2 2966 3059 -213 1041 240 138 42 chr3 69864169 69864619 -148172539 - MLT1K LTR MaLR -94 494 2 256 284 90 0 chr3 69864683 69864750 -148172408 + L2 LINE L2 3113 3185 -87 180 0 0 0 chr3 69864750 69864770 -148172388 + (TC)n Simple_repeat Simple_repeat 2 21 0 516 167 0 0 chr3 69864771 69864867 -148172291 + (TA)n Simple_repeat Simple_repeat 1 96 0 2484 63 3 0 chr3 69864867 69865168 -148171990 - AluY SINE Alu -9 302 1 283 290 0 0 chr3 69865183 69865252 -148171906 + L2 LINE L2 3242 3310 -3 211 291 37 122 chr3 69865351 69865540 -148171618 - MER5A DNA MER1_type 0 189 17 319 320 39 46 chr3 69865554 69865680 -148171478 + MIR SINE MIR 48 174 -88 1342 118 72 118 chr3 69865680 69866001 -148171157 + AluJo SINE Alu 1 306 -6 319 320 39 46 chr3 69866001 69866027 -148171131 + MIR SINE MIR 174 199 -63 706 242 117 35 chr3 69866080 69866311 -148170847 - MIR SINE MIR 0 262 13 189 0 0 0 chr3 69868752 69868773 -148168385 + (T)n Simple_repeat Simple_repeat 1 21 0 384 297 135 0 chr3 69870704 69870889 -148166269 + MIR SINE MIR 41 250 -12 23 0 0 0 chr3 69871283 69871306 -148165852 + GC_rich Low_complexity Low_complexity 1 23 0 250 143 0 0 chr3 69874276 69874318 -148162840 - MIR SINE MIR -115 147 106 342 45 0 0 chr3 69874949 69874993 -148162165 + (CCG)n Simple_repeat Simple_repeat 2 45 0 237 132 0 0 chr3 69878946 69878984 -148158174 + (T)n Simple_repeat Simple_repeat 1 38 0 343 182 11 11 chr3 69880553 69880641 -148156517 + CT-rich Low_complexity Low_complexity 1 88 0 220 208 13 13 chr3 69881389 69881466 -148155692 + (TA)n Simple_repeat Simple_repeat 2 78 0 284 324 64 35 chr3 69882387 69882560 -148154598 - MIR SINE MIR -15 247 70 1708 216 29 8 chr3 69882622 69883002 -148154156 + L1ME3A LINE L1 5536 5923 -247 268 151 19 0 chr3 69883029 69883082 -148154076 + L1ME3A LINE L1 6019 6072 -98 298 274 42 11 chr3 69884126 69884221 -148152937 - L2 LINE L2 -24 3289 3192 253 268 119 24 chr3 69884683 69884851 -148152307 + MIR SINE MIR 56 239 -23 1270 267 148 12 chr3 69884999 69885565 -148151593 - L1ME4a LINE L1 -1 6120 5478 568 185 9 0 chr3 69885579 69885687 -148151471 + AluSg/x SINE Alu 192 300 -9 2264 88 0 61 chr3 69885687 69886016 -148151142 + AluSx SINE Alu 1 309 -3 351 0 0 0 chr3 69886379 69886418 -148150740 + (TTCC)n Simple_repeat Simple_repeat 4 42 0 2239 126 0 0 chr3 69886419 69886728 -148150430 - AluSx SINE Alu -3 309 1 2607 59 0 3 chr3 69886742 69887048 -148150110 - AluY SINE Alu -6 305 1 614 205 38 22 chr3 69887536 69887721 -148149437 - L1MC5 LINE L1 -45 7916 7729 668 169 72 100 chr3 69887730 69888020 -148149138 - L1MC5 LINE L1 -292 7669 7388 183 191 85 0 chr3 69888113 69888160 -148148998 + L2 LINE L2 3146 3196 -76 419 155 0 0 chr3 69888556 69888627 -148148531 - AluSq SINE Alu -3 308 238 1327 83 41 0 chr3 69888627 69888796 -148148362 - AluSq SINE Alu -137 176 1 269 295 36 78 chr3 69889428 69889594 -148147564 - MIR SINE MIR -92 170 12 889 169 13 0 chr3 69889756 69889910 -148147248 + FRAM SINE Alu 19 174 -2 412 141 16 0 chr3 69890084 69890148 -148147010 - Charlie4a DNA MER1_type -20 488 424 1583 184 32 11 chr3 69890172 69890455 -148146703 - AluJo SINE Alu -23 289 1 524 162 7 52 chr3 69890455 69890580 -148146578 - Charlie4a DNA MER1_type -1522 439 319 2282 94 13 35 chr3 69890580 69890898 -148146260 - AluSp SINE Alu -2 311 1 2325 175 13 0 chr3 69890912 69891307 -148145851 - L1MA9 LINE L1 -239 6073 5674 762 197 90 7 chr3 69891308 69891553 -148145605 - Charlie4a DNA MER1_type -185 323 2 2358 65 14 14 chr3 69891677 69891970 -148145188 - AluSg SINE Alu -12 298 6 419 269 32 69 chr3 69892608 69892824 -148144334 - L1MC4a LINE L1 -1839 5969 5762 1418 263 101 24 chr3 69892950 69893406 -148143752 + LTR16C LTR ERVL 1 491 0 2148 130 10 0 chr3 69893789 69894096 -148143062 + AluSx SINE Alu 1 310 -2 515 285 0 109 chr3 69894106 69894373 -148142785 - MIR SINE MIR 0 262 25 24 0 0 0 chr3 69895791 69895815 -148141343 + AT_rich Low_complexity Low_complexity 1 24 0 382 305 96 30 chr3 69896092 69896259 -148140899 - L2 LINE L2 -3 3269 3092 24 77 0 0 chr3 69896752 69896804 -148140354 + AT_rich Low_complexity Low_complexity 1 52 0 467 303 33 14 chr3 69897601 69897812 -148139346 - L2 LINE L2 -420 2894 2680 213 39 0 0 chr3 69898020 69898046 -148139112 + (A)n Simple_repeat Simple_repeat 1 26 0 1884 244 156 25 chr3 69898187 69898933 -148138225 + L1ME3A LINE L1 5328 6170 0 2267 109 10 0 chr3 69899379 69899682 -148137476 + AluSg SINE Alu 1 306 -4 23 33 0 0 chr3 69899722 69899752 -148137406 + AT_rich Low_complexity Low_complexity 1 30 0 509 221 103 7 chr3 69899892 69900037 -148137121 + MIR SINE MIR 91 249 -13 2345 110 0 0 chr3 69903019 69903327 -148133831 - AluSg SINE Alu -2 308 1 181 167 37 0 chr3 69903895 69903949 -148133209 + (TGAA)n Simple_repeat Simple_repeat 1 56 0 203 209 0 23 chr3 69906714 69906757 -148130401 + (CA)n Simple_repeat Simple_repeat 2 43 0 216 0 0 0 chr3 69907205 69907229 -148129929 + (T)n Simple_repeat Simple_repeat 1 24 0 24 0 0 0 chr3 69907878 69907902 -148129256 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr3 69907970 69907993 -148129165 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 396 220 156 0 chr3 69908352 69908461 -148128697 - MIR3 SINE MIR -6 202 77 883 199 28 6 chr3 69908554 69908730 -148128428 - MER63A DNA MER1_type -24 186 7 600 222 203 9 chr3 69909328 69909540 -148127618 + MIR SINE MIR 5 257 -5 291 28 0 0 chr3 69909560 69909596 -148127562 + (CAT)n Simple_repeat Simple_repeat 2 37 0 610 253 59 0 chr3 69909940 69910110 -148127048 + MIR SINE MIR 69 248 -14 2158 120 7 7 chr3 69910155 69910464 -148126694 - AluSx SINE Alu -3 309 1 829 190 11 11 chr3 69910699 69910878 -148126280 - MER96B DNA MER1_type? -238 179 1 410 317 22 11 chr3 69911446 69911626 -148125532 - MIR SINE MIR -17 245 64 201 147 0 0 chr3 69912463 69912497 -148124661 + (CA)n Simple_repeat Simple_repeat 2 35 0 231 181 103 37 chr3 69912846 69912930 -148124228 - MIR SINE MIR -64 144 64 468 217 118 26 chr3 69912990 69913142 -148124016 + MIR SINE MIR 76 241 -21 1842 159 7 11 chr3 69913248 69913531 -148123627 + AluJo SINE Alu 1 282 -30 216 0 0 0 chr3 69913536 69913560 -148123598 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr3 69914574 69914595 -148122563 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr3 69914851 69914883 -148122275 + AT_rich Low_complexity Low_complexity 1 32 0 3129 139 40 2 chr3 69915692 69916210 -148120948 + L1MB2 LINE L1 5634 6171 0 21 0 0 0 chr3 69916315 69916336 -148120822 + AT_rich Low_complexity Low_complexity 1 21 0 197 65 32 0 chr3 69918309 69918340 -148118818 + (TTTC)n Simple_repeat Simple_repeat 3 34 0 1131 87 0 104 chr3 69919298 69919481 -148117677 - AluJb SINE Alu -15 297 134 451 161 111 0 chr3 69919600 69919681 -148117477 - MER103 DNA DNA -67 99 10 2240 114 7 0 chr3 69919706 69920013 -148117145 - AluSx SINE Alu -3 309 1 827 166 13 7 chr3 69920135 69920286 -148116872 + FRAM SINE Alu 22 173 -3 595 186 10 0 chr3 69920323 69920420 -148116738 + FLAM_A SINE Alu 12 109 -33 222 37 0 0 chr3 69920429 69920456 -148116702 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 403 241 17 17 chr3 69920457 69920573 -148116585 - MIR SINE MIR -13 249 134 1869 147 6 49 chr3 69920743 69921069 -148116089 - AluJb SINE Alu 0 312 1 468 35 0 0 chr3 69923290 69923348 -148113810 + (CA)n Simple_repeat Simple_repeat 2 59 0 212 184 20 0 chr3 69924887 69924936 -148112222 + CT-rich Low_complexity Low_complexity 4 53 0 1411 110 87 28 chr3 69925073 69925291 -148111867 - AluSq SINE Alu -82 231 1 2046 73 29 11 chr3 69926476 69926750 -148110408 + AluY SINE Alu 26 304 -7 1208 97 0 12 chr3 69926750 69926915 -148110243 + AluSq SINE Alu 137 299 -14 2104 120 24 3 chr3 69926984 69927276 -148109882 + AluSx SINE Alu 1 298 -14 369 283 10 0 chr3 69928320 69928419 -148108739 + L1ME LINE L1 5535 5634 -487 1831 133 15 0 chr3 69928450 69928714 -148108444 + AluSx SINE Alu 1 268 -44 22 56 0 0 chr3 69930012 69930048 -148107110 + AT_rich Low_complexity Low_complexity 1 36 0 456 269 145 0 chr3 69930866 69931011 -148106147 + MIR SINE MIR 97 262 0 260 237 75 32 chr3 69931003 69931096 -148106062 + MIR SINE MIR 109 205 -57 * 2254 99 0 0 chr3 69931428 69931720 -148105438 - AluY SINE Alu -19 292 1 180 261 22 22 chr3 69932143 69932189 -148104969 - L2 LINE L2 -8 3264 3219 192 248 99 69 chr3 69932270 69932371 -148104787 + MIR SINE MIR 92 195 -67 1042 162 111 5 chr3 69932449 69932647 -148104511 - MER20 DNA MER1_type 0 219 1 263 298 101 65 chr3 69932656 69932824 -148104334 + MER5B DNA MER1_type 2 175 -3 2325 107 0 0 chr3 69933386 69933686 -148103472 - AluSc SINE Alu -9 300 1 860 267 12 16 chr3 69933730 69933977 -148103181 - MIR SINE MIR 0 262 17 2307 87 0 26 chr3 69934023 69934333 -148102825 + AluY SINE Alu 1 302 -9 1060 176 42 32 chr3 69934685 69934901 -148102257 - MER20 DNA MER1_type 0 219 2 297 0 0 0 chr3 69935534 69935567 -148101591 + (T)n Simple_repeat Simple_repeat 1 33 0 1178 200 28 9 chr3 69936002 69936217 -148100941 + MER20 DNA MER1_type 1 219 0 563 271 120 4 chr3 69936220 69936445 -148100713 - MER112 DNA MER1_type -1 259 9 515 233 185 20 chr3 69936470 69936616 -148100542 - MER5A DNA MER1_type -10 179 10 219 36 0 0 chr3 69936843 69936871 -148100287 + (TG)n Simple_repeat Simple_repeat 1 28 0 226 239 15 15 chr3 69937896 69937963 -148099195 + (CATA)n Simple_repeat Simple_repeat 3 69 0 242 296 171 23 chr3 69938826 69939002 -148098156 + L1MC4 LINE L1 7529 7730 -312 28 48 0 0 chr3 69939096 69939138 -148098020 + AT_rich Low_complexity Low_complexity 1 42 0 502 307 90 5 chr3 69939463 69939652 -148097506 - MIR SINE MIR -56 206 2 258 105 0 0 chr3 69939834 69939872 -148097286 + (ATG)n Simple_repeat Simple_repeat 1 38 0 454 281 82 15 chr3 69939923 69940058 -148097100 - MIR SINE MIR -72 190 47 230 56 28 0 chr3 69943189 69943225 -148093933 + (TTAA)n Simple_repeat Simple_repeat 1 37 0 221 154 0 0 chr3 69943536 69943575 -148093583 + (CA)n Simple_repeat Simple_repeat 1 39 0 201 74 0 0 chr3 69944094 69944121 -148093037 + (GAAAA)n Simple_repeat Simple_repeat 1 27 0 204 40 0 0 chr3 69944235 69944260 -148092898 + (CA)n Simple_repeat Simple_repeat 2 26 0 204 40 0 0 chr3 69944578 69944603 -148092555 + (T)n Simple_repeat Simple_repeat 1 25 0 387 0 0 0 chr3 69945954 69945997 -148091161 + (TG)n Simple_repeat Simple_repeat 2 44 0 736 249 47 26 chr3 69947240 69947433 -148089725 + L2 LINE L2 3117 3313 0 300 305 0 59 chr3 69947577 69947695 -148089463 + MIR SINE MIR 106 216 -46 816 220 23 12 chr3 69948960 69949133 -148088025 - MER5B DNA MER1_type -3 175 1 431 284 24 31 chr3 69949141 69949268 -148087890 + MER5B DNA MER1_type 1 126 -52 24 67 0 0 chr3 69949294 69949339 -148087819 + AT_rich Low_complexity Low_complexity 1 45 0 532 298 39 11 chr3 69949416 69949429 -148087729 + MIR SINE MIR 6 17 -245 867 230 9 68 chr3 69949429 69949453 -148087705 + MER63A DNA MER1_type 2 26 -1662 2193 96 0 23 chr3 69949453 69949755 -148087403 - AluSq SINE Alu -17 296 2 867 230 9 68 chr3 69949755 69949952 -148087206 + MER63A DNA MER1_type 26 210 0 532 298 39 11 chr3 69949952 69950119 -148087039 + MIR SINE MIR 17 191 -71 428 242 44 0 chr3 69950411 69950502 -148086656 + MIR SINE MIR 52 146 -62 2719 108 16 8 chr3 69950700 69951070 -148086088 + THE1C LTR MaLR 3 375 0 435 163 12 12 chr3 69951210 69951290 -148085868 + MER116 DNA Mariner 1 80 0 484 315 14 0 chr3 69951588 69951731 -148085427 - MIR SINE MIR -25 237 93 21 0 0 0 chr3 69952168 69952189 -148084969 + AT_rich Low_complexity Low_complexity 1 21 0 302 147 80 13 chr3 69952542 69952617 -148084541 + MADE1 DNA Mariner 1 80 0 195 146 0 0 chr3 69952931 69952972 -148084186 + (A)n Simple_repeat Simple_repeat 1 41 0 801 217 27 33 chr3 69953669 69953853 -148083305 + MIR SINE MIR 5 187 -75 214 321 143 38 chr3 69954324 69954510 -148082648 + MIR3 SINE MIR 11 212 -50 227 263 75 12 chr3 69954684 69954764 -148082394 + L2 LINE L2 3167 3251 -62 2124 90 11 4 chr3 69955880 69956157 -148081001 - AluSx SINE Alu -33 279 1 322 330 186 21 chr3 69956158 69956491 -148080667 + L3 LINE CR1 1085 1472 -105 207 0 0 0 chr3 69956509 69956532 -148080626 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 216 0 0 0 chr3 69957042 69957066 -148080092 + (TG)n Simple_repeat Simple_repeat 2 25 0 333 248 175 0 chr3 69957101 69957238 -148079920 + MIR SINE MIR 13 173 -89 516 293 11 42 chr3 69957994 69958186 -148078972 - MIR SINE MIR -20 242 58 311 203 47 0 chr3 69959238 69959302 -148077856 + L2 LINE L2 3246 3312 -1 831 215 23 6 chr3 69959554 69959731 -148077427 - MER3 DNA MER1_type -29 180 1 272 274 130 75 chr3 69959952 69960073 -148077085 + HAL1 LINE L1 2180 2293 -214 1809 159 27 3 chr3 69960073 69960195 -148076963 + AluJo SINE Alu 1 119 -193 243 0 0 0 chr3 69960195 69960222 -148076936 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1809 159 27 3 chr3 69960222 69960394 -148076764 + AluJo SINE Alu 119 302 -10 272 274 130 75 chr3 69960394 69960579 -148076579 + HAL1 LINE L1 2293 2503 -4 476 235 8 66 chr3 69961620 69961776 -148075382 - MIR SINE MIR -60 148 3 379 228 13 0 chr3 69962925 69963004 -148074154 + MER116 DNA Mariner 1 80 0 883 255 17 4 chr3 69963024 69963255 -148073903 - MIR SINE MIR -1 261 28 278 315 0 22 chr3 69963505 69963597 -148073561 - L2 LINE L2 -10 3262 3173 381 22 0 0 chr3 69963800 69963846 -148073312 + (TG)n Simple_repeat Simple_repeat 2 47 0 1181 183 61 47 chr3 69964809 69965088 -148072070 + AluJo SINE Alu 6 288 -24 299 273 83 68 chr3 69965225 69965357 -148071801 - MIR SINE MIR -73 189 56 2386 84 0 0 chr3 69965786 69966085 -148071073 + AluSx SINE Alu 1 299 -13 320 269 67 25 chr3 69966089 69966208 -148070950 + MER5A DNA MER1_type 56 179 -10 766 226 41 20 chr3 69967315 69967510 -148069648 + MIR SINE MIR 2 200 -62 2243 12 0 4 chr3 69968450 69968694 -148068464 - L1PA4 LINE L1 -4 6151 5909 3108 258 98 41 chr3 69968753 69970153 -148067005 - L2 LINE L2 0 3313 1815 502 276 151 0 chr3 69970165 69970317 -148066841 + MER5A DNA MER1_type 9 183 -6 329 214 24 103 chr3 69970336 69970462 -148066696 - L2 LINE L2 -1539 1775 1660 387 312 164 22 chr3 69971844 69972113 -148065045 - L2 LINE L2 -74 3239 2933 371 268 125 9 chr3 69973469 69973581 -148063577 + MER91C DNA MER1_type 16 140 0 2115 164 27 3 chr3 69973933 69974269 -148062889 + MER2 DNA MER2_type 1 344 0 583 231 0 9 chr3 69974424 69974532 -148062626 - MER81 DNA DNA -4 110 4 231 36 0 0 chr3 69976387 69976415 -148060743 + (TTG)n Simple_repeat Simple_repeat 2 29 0 251 270 0 14 chr3 69977152 69977226 -148059932 + CT-rich Low_complexity Low_complexity 2 74 0 653 269 60 36 chr3 69980769 69981018 -148056140 - MIR SINE MIR -5 257 3 428 240 29 10 chr3 69981142 69981246 -148055912 - L2 LINE L2 -9 3304 3199 316 352 105 0 chr3 69981546 69981708 -148055450 - MIR3 SINE MIR 0 208 30 225 94 0 0 chr3 69985590 69985622 -148051536 + (A)n Simple_repeat Simple_repeat 1 32 0 277 303 74 25 chr3 69986703 69986825 -148050333 + MIR SINE MIR 26 153 -109 271 323 93 30 chr3 69987170 69987362 -148049796 + MIR3 SINE MIR 15 211 -51 452 311 172 5 chr3 69987469 69987678 -148049480 + MIR SINE MIR 13 256 -6 318 50 0 0 chr3 69988082 69988122 -148049036 + (CA)n Simple_repeat Simple_repeat 1 40 0 666 273 99 8 chr3 69988163 69988393 -148048765 + MIR SINE MIR 8 252 -10 411 287 138 18 chr3 69988610 69988777 -148048381 - L2 LINE L2 -220 3052 2866 244 196 18 54 chr3 69988805 69988861 -148048297 - MIR3 SINE MIR -23 185 132 189 0 0 0 chr3 69989596 69989617 -148047541 + (GA)n Simple_repeat Simple_repeat 2 22 0 2274 102 0 7 chr3 69991658 69991963 -148045195 - AluSq SINE Alu -10 303 1 316 320 25 16 chr3 69992153 69992275 -148044883 + MIR3 SINE MIR 82 204 -4 23 54 0 0 chr3 69992340 69992377 -148044781 + AT_rich Low_complexity Low_complexity 1 37 0 645 357 12 8 chr3 69992379 69992631 -148044527 - MIR SINE MIR -1 261 9 851 208 58 6 chr3 69993400 69993573 -148043585 + MER20 DNA MER1_type 38 219 0 451 312 29 14 chr3 69993698 69993836 -148043322 - MER5A DNA MER1_type 0 189 50 589 262 67 0 chr3 69993891 69994055 -148043103 - MER5B DNA MER1_type -3 175 1 486 353 54 4 chr3 69994710 69994968 -148042190 + L2 LINE L2 2379 2649 -665 378 74 0 0 chr3 69995106 69995160 -148041998 + (CA)n Simple_repeat Simple_repeat 1 54 0 230 247 14 14 chr3 69998213 69998286 -148038872 - LTR67 LTR ERVL -25 532 460 196 268 143 0 chr3 69998344 69998400 -148038758 + MER5B DNA MER1_type 1 64 -114 1472 195 18 14 chr3 69998401 69998683 -148038475 + AluJb SINE Alu 1 283 -29 516 16 0 0 chr3 69998683 69998744 -148038414 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 783 201 67 11 chr3 69999625 69999804 -148037354 + MER5A DNA MER1_type 1 189 0 923 174 0 13 chr3 70001061 70001210 -148035948 + FRAM SINE Alu 6 152 -24 254 263 26 13 chr3 70002078 70002154 -148035004 - MER102a DNA MER1_type 0 330 254 405 273 43 25 chr3 70002192 70002353 -148034805 - MER102a DNA MER1_type -157 173 10 628 291 50 18 chr3 70003317 70003537 -148033621 - MIR SINE MIR -13 249 23 358 385 67 34 chr3 70008936 70009263 -148027895 - L2 LINE L2 0 3272 2935 596 247 157 22 chr3 70009286 70009509 -148027649 - MIR SINE MIR 0 262 10 345 131 36 24 chr3 70010563 70010647 -148026511 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 248 50 75 0 chr3 70010665 70010705 -148026453 + GA-rich Low_complexity Low_complexity 4 46 0 182 208 21 0 chr3 70010704 70010752 -148026406 + (TGGG)n Simple_repeat Simple_repeat 1 49 0 * 314 308 108 0 chr3 70010787 70010917 -148026241 - MIR SINE MIR -29 233 90 1901 171 40 3 chr3 70011519 70011818 -148025340 - AluSx SINE Alu -2 310 1 295 224 200 0 chr3 70012077 70012162 -148024996 - MIR SINE MIR -14 248 147 308 181 0 3 chr3 70012162 70012277 -148024881 - MER104 DNA Tc2 0 180 35 401 323 0 24 chr3 70012318 70012445 -148024713 - MIR SINE MIR -134 128 5 510 250 12 25 chr3 70012836 70012996 -148024162 + MIR SINE MIR 105 262 0 364 229 129 35 chr3 70013083 70013253 -148023905 - MER5A DNA MER1_type 0 189 4 318 369 10 50 chr3 70013315 70013513 -148023645 - L2 LINE L2 -10 3262 3073 544 297 126 40 chr3 70013782 70014226 -148022932 - MLT1K LTR MaLR -42 546 65 231 214 0 0 chr3 70014384 70014440 -148022718 + (TTAAA)n Simple_repeat Simple_repeat 1 56 0 2325 91 0 0 chr3 70014442 70014740 -148022418 - AluSg SINE Alu -12 298 1 195 279 49 0 chr3 70014968 70015029 -148022129 - L2 LINE L2 -9 3304 3241 392 309 57 34 chr3 70015181 70015356 -148021802 - L2 LINE L2 -555 2759 2581 390 307 0 43 chr3 70017488 70017628 -148019530 - MIR3 SINE MIR -61 147 14 210 150 0 25 chr3 70019304 70019344 -148017814 + (TG)n Simple_repeat Simple_repeat 2 40 0 2227 114 0 9 chr3 70020392 70020708 -148016450 + AluSq SINE Alu 1 313 0 302 278 239 15 chr3 70024080 70024285 -148012873 + MIR SINE MIR 9 259 -3 626 277 12 12 chr3 70024445 70024611 -148012547 + MER5B DNA MER1_type 6 171 -7 221 81 0 27 chr3 70024751 70024788 -148012370 + (GAAAA)n Simple_repeat Simple_repeat 2 37 0 215 254 16 16 chr3 70025125 70025188 -148011970 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 1799 89 92 72 chr3 70025876 70026169 -148010989 + AluSq SINE Alu 1 299 -14 183 42 0 0 chr3 70026237 70026261 -148010897 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 408 20 0 0 chr3 70029253 70029302 -148007856 + (TG)n Simple_repeat Simple_repeat 2 50 0 1003 180 29 0 chr3 70029872 70030044 -148007114 - MER58A DNA MER1_type -2 222 46 238 220 0 0 chr3 70030148 70030198 -148006960 - MER103 DNA DNA -107 59 10 258 32 0 0 chr3 70030505 70030536 -148006622 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2464 67 0 0 chr3 70031379 70031679 -148005479 + AluY SINE Alu 1 300 -11 1768 158 18 3 chr3 70032049 70032333 -148004825 + AluJo SINE Alu 1 288 -24 261 0 0 0 chr3 70032340 70032369 -148004789 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 337 303 11 90 chr3 70033548 70033719 -148003439 - L3 LINE CR1 -24 1553 1397 2425 182 28 47 chr3 70033719 70034214 -148002944 + MER66B LTR ERV1 1 486 0 337 303 11 90 chr3 70034214 70034230 -148002928 - L3 LINE CR1 -180 1397 1381 2407 76 3 0 chr3 70034372 70034674 -148002484 - AluY SINE Alu -8 303 1 236 323 21 0 chr3 70034702 70034795 -148002363 - L1MA9 LINE L1 -38 6274 6180 281 229 54 169 chr3 70034853 70035019 -148002139 + MIR3 SINE MIR 47 193 -15 415 225 0 0 chr3 70035058 70035138 -148002020 + L2 LINE L2 3190 3269 -3 484 233 18 33 chr3 70035616 70035790 -148001368 + MER106B DNA MER1_type 2 992 -67 288 312 0 0 chr3 70037451 70037544 -147999614 + C-rich Low_complexity Low_complexity 1 93 0 515 211 139 39 chr3 70037978 70038158 -147999000 - L1ME3A LINE L1 0 6170 5973 21 0 0 0 chr3 70039531 70039552 -147997606 + AT_rich Low_complexity Low_complexity 1 21 0 314 336 64 0 chr3 70042805 70042915 -147994243 + L2 LINE L2 3197 3313 0 442 297 0 0 chr3 70043271 70043382 -147993776 - L2 LINE L2 0 3272 3162 256 342 0 45 chr3 70044250 70044361 -147992797 + L2 LINE L2 3157 3262 -10 210 248 168 71 chr3 70044694 70044807 -147992351 - L2 LINE L2 0 3272 3149 249 33 0 0 chr3 70045228 70045258 -147991900 + (T)n Simple_repeat Simple_repeat 1 30 0 186 43 0 0 chr3 70047133 70047156 -147990002 + (A)n Simple_repeat Simple_repeat 1 23 0 872 225 32 21 chr3 70047750 70047937 -147989221 - MER5A DNA MER1_type 0 189 1 372 302 69 0 chr3 70048005 70048121 -147989037 + MIR SINE MIR 20 143 -65 1880 166 55 11 chr3 70048476 70048837 -147988321 - L1MB7 LINE L1 -19 6165 5789 1045 175 8 37 chr3 70048837 70049083 -147988075 - L1MB7 LINE L1 -785 5361 5123 2203 87 14 7 chr3 70051035 70051322 -147985836 + AluSc SINE Alu 1 289 -20 376 226 129 0 chr3 70051735 70051828 -147985330 - L1ME2 LINE L1 -4 6160 6056 190 246 16 66 chr3 70053198 70053259 -147983899 - MIR SINE MIR -67 141 84 24 0 0 0 chr3 70053427 70053451 -147983707 + AT_rich Low_complexity Low_complexity 1 24 0 644 283 127 21 chr3 70055851 70056134 -147981024 + MER102b DNA MER1_type 29 341 0 518 276 70 55 chr3 70056519 70056776 -147980382 + MIR SINE MIR 2 262 0 436 224 164 8 chr3 70057083 70057217 -147979941 - MIR3 SINE MIR -13 195 41 760 295 96 22 chr3 70058873 70059239 -147977919 - L2 LINE L2 0 3313 2921 386 286 59 42 chr3 70059416 70059646 -147977512 + MIR3 SINE MIR 19 251 -11 337 278 106 13 chr3 70059594 70059745 -147977413 - MIR SINE MIR -13 249 85 * 575 266 104 6 chr3 70060559 70060732 -147976426 - MIR SINE MIR 0 262 73 463 336 127 66 chr3 70061013 70061453 -147975705 - L2 LINE L2 -2 3270 2804 2103 116 0 0 chr3 70062078 70062355 -147974803 + AluSx SINE Alu 29 305 -7 371 252 86 40 chr3 70062521 70062672 -147974486 + MIR SINE MIR 92 249 -13 3537 53 12 0 chr3 70062747 70063165 -147973993 - L1PA7 LINE L1 -1 6153 5731 488 230 63 0 chr3 70063504 70063630 -147973528 + MIR SINE MIR 59 192 -70 544 253 34 34 chr3 70063879 70064025 -147973133 - MER63A DNA MER1_type 0 210 65 1592 251 43 24 chr3 70064143 70064653 -147972505 - MER113 DNA MER1_type? -1 520 1 308 237 269 0 chr3 70064659 70064752 -147972406 - MIR3 SINE MIR -54 154 37 499 288 91 49 chr3 70065306 70065549 -147971609 + MIR SINE MIR 8 260 -2 201 288 30 0 chr3 70067456 70067522 -147969636 + L2 LINE L2 2933 3000 -313 205 324 5 54 chr3 70067915 70068100 -147969058 + GA-rich Low_complexity Low_complexity 5 180 0 351 0 0 0 chr3 70068334 70068373 -147968785 + (CA)n Simple_repeat Simple_repeat 1 39 0 278 315 0 22 chr3 70068576 70068668 -147968490 + L2 LINE L2 3173 3262 -10 870 260 17 4 chr3 70068918 70069149 -147968009 + MIR SINE MIR 28 261 -1 379 228 13 0 chr3 70069169 70069248 -147967910 - MER116 DNA Mariner 0 80 1 191 261 144 72 chr3 70070927 70071038 -147966120 + L2 LINE L2 3146 3264 -8 2284 105 3 0 chr3 70071227 70071522 -147965636 - AluSp SINE Alu -17 296 1 22 0 0 0 chr3 70071697 70071719 -147965439 + AT_rich Low_complexity Low_complexity 1 22 0 2241 117 0 0 chr3 70072527 70072827 -147964331 + AluSg SINE Alu 1 300 -10 200 217 58 72 chr3 70072916 70072985 -147964173 + MER5B DNA MER1_type 77 144 -34 1620 158 10 59 chr3 70072995 70073298 -147963860 - AluJb SINE Alu -24 288 1 218 296 211 39 chr3 70073655 70073915 -147963243 - L2 LINE L2 0 3313 3009 287 365 36 7 chr3 70074062 70074199 -147962959 + MIR SINE MIR 20 160 -102 799 206 0 0 chr3 70074236 70074362 -147962796 - FLAM_C SINE Alu -16 127 2 1250 251 105 58 chr3 70074368 70074890 -147962268 + MLT1K LTR MaLR 1 547 -41 2782 107 11 3 chr3 70075275 70075657 -147961501 - L1PB1 LINE L1 -3 6148 5764 309 248 9 92 chr3 70075708 70075735 -147961423 + MIR SINE MIR 32 60 -148 2292 102 0 0 chr3 70075735 70076029 -147961129 - AluY SINE Alu -17 294 1 309 248 9 92 chr3 70076029 70076110 -147961048 + MIR SINE MIR 60 131 -77 2210 129 0 0 chr3 70076336 70076631 -147960527 - AluSg SINE Alu -13 297 3 25 0 0 0 chr3 70076655 70076680 -147960478 + AT_rich Low_complexity Low_complexity 1 25 0 512 260 13 20 chr3 70077163 70077313 -147959845 + MER5A DNA MER1_type 1 149 -40 383 256 58 22 chr3 70077196 70077333 -147959825 - MER5A DNA MER1_type -22 167 26 * 254 292 73 10 chr3 70078404 70078500 -147958658 + MIR SINE MIR 23 124 -84 2062 121 13 0 chr3 70079296 70079602 -147957556 - AluSx SINE Alu 0 312 3 255 292 46 0 chr3 70079658 70079723 -147957435 + MLT1K LTR MaLR 2 69 -519 2322 198 34 81 chr3 70079924 70080505 -147956653 + MLT2B3 LTR ERVL 1 554 0 2245 108 0 3 chr3 70080834 70081130 -147956028 - AluSq SINE Alu -17 296 2 181 277 21 0 chr3 70081315 70081362 -147955796 - L3 LINE CR1 -5 1572 1525 23 68 0 0 chr3 70082339 70082383 -147954775 + AT_rich Low_complexity Low_complexity 1 44 0 601 209 127 0 chr3 70082404 70082538 -147954620 + L1ME3 LINE L1 6011 6161 -1 21 57 0 0 chr3 70083198 70083233 -147953925 + AT_rich Low_complexity Low_complexity 1 35 0 1805 160 3 3 chr3 70083299 70083593 -147953565 - AluSp SINE Alu -18 295 2 277 332 56 47 chr3 70083936 70084150 -147953008 + L2 LINE L2 2424 2639 -675 418 215 92 8 chr3 70084286 70084416 -147952742 + MER113 DNA MER1_type? 9 149 -372 1109 204 74 97 chr3 70084476 70084613 -147952545 + MER2 DNA MER2_type 1 140 -204 2207 124 0 0 chr3 70084613 70084912 -147952246 - AluSx SINE Alu -13 299 1 1109 204 74 97 chr3 70084912 70085126 -147952032 + MER2 DNA MER2_type 140 344 0 225 284 75 0 chr3 70085136 70085203 -147951955 + MER113 DNA MER1_type? 446 517 -4 256 365 157 6 chr3 70085264 70085582 -147951576 + L2 LINE L2 2829 3194 -78 468 305 84 14 chr3 70085760 70085973 -147951185 + L2 LINE L2 2491 2718 -596 568 264 19 60 chr3 70085985 70086201 -147950957 - L2 LINE L2 -544 2770 2564 552 279 93 30 chr3 70086364 70086600 -147950558 + MIR SINE MIR 11 262 0 605 196 57 44 chr3 70087114 70087272 -147949886 + MIR SINE MIR 82 241 -21 489 285 16 8 chr3 70087294 70087417 -147949741 - MIR SINE MIR -108 154 31 653 254 90 20 chr3 70087959 70088203 -147948955 + MIR SINE MIR 2 262 0 1996 156 3 0 chr3 70088245 70088547 -147948611 + AluSx SINE Alu 8 310 -2 629 94 31 10 chr3 70089011 70089107 -147948051 - L1MA8 LINE L1 -150 6141 6044 765 273 48 5 chr3 70089380 70089567 -147947591 - MIR SINE MIR -28 234 40 1447 229 41 71 chr3 70089587 70090058 -147947100 + L1MEc LINE L1 2099 2517 -3698 2504 73 0 0 chr3 70090058 70090361 -147946797 + AluY SINE Alu 1 303 -8 1447 229 41 71 chr3 70090361 70090563 -147946595 + L1MEc LINE L1 2517 2724 -3491 236 288 100 0 chr3 70090962 70091042 -147946116 + MIR SINE MIR 60 147 -115 1073 269 177 16 chr3 70091056 70091740 -147945418 - L2 LINE L2 0 3313 2501 533 181 0 0 chr3 70091740 70091823 -147945335 + AluJo SINE Alu 2 84 -228 4368 41 2 8 chr3 70091823 70092332 -147944826 + L1PA3 LINE L1 5650 6155 0 416 276 0 0 chr3 70092336 70092459 -147944699 + L1M4c LINE L1 1471 1593 -4791 299 365 16 8 chr3 70092571 70092697 -147944461 - MER5A DNA MER1_type 0 189 63 180 227 114 0 chr3 70092897 70092941 -147944217 + MIR SINE MIR 160 208 -54 23 0 0 0 chr3 70093173 70093196 -147943962 + AT_rich Low_complexity Low_complexity 1 23 0 1380 147 13 30 chr3 70093196 70093427 -147943731 + AluJo SINE Alu 73 299 -13 282 264 23 0 chr3 70093432 70093519 -147943639 - L2 LINE L2 -826 2488 2400 193 267 12 47 chr3 70093503 70093589 -147943569 + MIR SINE MIR 130 212 -50 * 1805 166 0 0 chr3 70093893 70094182 -147942976 + AluJb SINE Alu 1 289 -23 223 260 117 0 chr3 70094672 70094749 -147942409 + MIR SINE MIR 139 224 -38 321 68 0 0 chr3 70094878 70094922 -147942236 + (TC)n Simple_repeat Simple_repeat 2 45 0 2310 106 0 7 chr3 70095735 70096036 -147941122 - AluSx SINE Alu -13 299 1 196 322 34 42 chr3 70097090 70097208 -147939950 - MIR SINE MIR -57 151 35 216 328 0 0 chr3 70097513 70097577 -147939581 - MIR SINE MIR -62 146 83 267 246 71 44 chr3 70098447 70098630 -147938528 - Charlie7 DNA MER1_type -15 2597 2410 * 1567 263 35 13 chr3 70098611 70099068 -147938090 - Charlie7 DNA MER1_type -1885 727 261 872 260 116 36 chr3 70100209 70100647 -147936511 + L1MC4a LINE L1 5495 5967 -1841 284 324 7 15 chr3 70101289 70101425 -147935733 + MIR SINE MIR 97 231 -31 2058 134 3 3 chr3 70101639 70101938 -147935220 + AluSx SINE Alu 1 299 -13 2378 89 0 10 chr3 70102576 70102889 -147934269 - AluSq SINE Alu -3 310 1 435 321 68 68 chr3 70102913 70103327 -147933831 - L2 LINE L2 -50 3222 2809 834 273 33 33 chr3 70103451 70103755 -147933403 + MER20B DNA MER1_type 3 306 -477 737 238 145 30 chr3 70103825 70104128 -147933030 + MER20B DNA MER1_type 446 783 0 362 304 26 9 chr3 70104136 70104251 -147932907 - MIR SINE MIR -92 170 54 624 301 194 11 chr3 70105348 70105730 -147931428 + L2 LINE L2 2861 3312 -1 32 0 0 0 chr3 70105852 70105884 -147931274 + AT_rich Low_complexity Low_complexity 1 32 0 2790 19 0 0 chr3 70105884 70106192 -147930966 - AluYa5 SINE Alu -3 308 1 328 224 0 0 chr3 70106198 70106274 -147930884 - L1ME LINE L1 -298 5823 5748 652 173 0 9 chr3 70106291 70106401 -147930757 - FLAM_A SINE Alu -6 136 28 380 258 129 57 chr3 70106526 70106774 -147930384 - L1ME LINE L1 -509 5612 5347 380 319 53 0 chr3 70107100 70107228 -147929930 + MIR SINE MIR 10 145 -63 1596 96 10 86 chr3 70107372 70107419 -147929739 - L1MA5 LINE L1 -1 6299 6250 3296 79 27 20 chr3 70107419 70107820 -147929338 + MLT2A1 LTR ERVL 1 407 -37 315 0 0 0 chr3 70107820 70107855 -147929303 + (CA)n Simple_repeat Simple_repeat 2 36 0 3296 79 27 20 chr3 70107855 70107894 -147929264 + MLT2A1 LTR ERVL 407 444 0 1596 96 10 86 chr3 70107894 70107912 -147929246 - L1MA5 LINE L1 -50 6250 6232 2283 88 10 7 chr3 70107912 70108208 -147928950 - AluSq SINE Alu -16 297 1 1596 96 10 86 chr3 70108208 70108432 -147928726 - L1MA5 LINE L1 -68 6232 6031 258 329 77 27 chr3 70108453 70108675 -147928483 - MIR SINE MIR -11 251 19 1383 174 79 56 chr3 70108782 70109087 -147928071 + AluJo SINE Alu 1 312 0 483 140 0 207 chr3 70109625 70109775 -147927383 - MER45 DNA AcHobo 0 1581 1463 869 243 33 0 chr3 70109777 70109958 -147927200 - MER45 DNA AcHobo -1394 187 1 393 248 49 112 chr3 70110237 70110498 -147926660 - MIR SINE MIR -3 259 14 304 244 0 22 chr3 70111022 70111112 -147926046 - MIR SINE MIR 0 262 175 214 362 0 0 chr3 70111116 70111185 -147925973 - MIR SINE MIR -193 69 1 468 54 96 18 chr3 70111197 70111364 -147925794 + (TA)n Simple_repeat Simple_repeat 1 180 0 22 0 0 0 chr3 70111364 70111386 -147925772 + AT_rich Low_complexity Low_complexity 1 22 0 425 8 109 31 chr3 70111536 70111664 -147925494 + (TA)n Simple_repeat Simple_repeat 1 138 0 366 331 32 39 chr3 70112330 70112484 -147924674 - L2 LINE L2 -5 3267 3115 230 175 0 0 chr3 70112492 70112532 -147924626 + MIR SINE MIR 115 154 -108 797 174 0 0 chr3 70112560 70112681 -147924477 + FLAM_A SINE Alu 4 124 -9 180 338 14 0 chr3 70112729 70112803 -147924355 + MIR SINE MIR 188 262 0 1377 208 47 0 chr3 70112817 70113134 -147924024 + MER58B DNA MER1_type 1 341 0 397 236 35 49 chr3 70114449 70114593 -147922565 + L2 LINE L2 2292 2433 -881 312 291 177 13 chr3 70114781 70114939 -147922219 + L2 LINE L2 3128 3311 -2 362 384 0 0 chr3 70115077 70115189 -147921969 + L2 LINE L2 3197 3308 -5 242 283 141 11 chr3 70115229 70115321 -147921837 + MIR SINE MIR 42 145 -63 1219 159 61 43 chr3 70115355 70115554 -147921604 - L1MCa LINE L1 -5368 1058 851 2403 65 0 10 chr3 70115554 70115848 -147921310 - AluY SINE Alu -20 291 1 1219 159 61 43 chr3 70115848 70115925 -147921233 - L1MCa LINE L1 -5575 851 777 * 1346 165 13 4 chr3 70115924 70116161 -147920997 - L1MCa LINE L1 -6167 259 21 180 346 49 0 chr3 70117007 70117088 -147920070 - MIR3 SINE MIR -21 187 103 367 318 9 0 chr3 70117110 70117217 -147919941 + MIR SINE MIR 66 173 -89 479 292 65 16 chr3 70117290 70117475 -147919683 + MIR SINE MIR 8 201 -61 3084 132 5 0 chr3 70117928 70118354 -147918804 + MSTC LTR MaLR 1 428 0 318 346 77 43 chr3 70118366 70118600 -147918558 + MLT1I LTR MaLR 65 306 -103 503 199 6 127 chr3 70118606 70118772 -147918386 + MLT1H LTR MaLR 404 549 0 1608 180 21 0 chr3 70120008 70120297 -147916861 - AluJb SINE Alu -17 295 1 757 238 51 38 chr3 70121221 70121456 -147915702 + MIR SINE MIR 14 251 -11 1790 159 10 19 chr3 70121526 70121840 -147915318 + AluJb SINE Alu 1 311 -1 2008 150 16 0 chr3 70121890 70122269 -147914889 - AluSx SINE Alu 0 384 1 344 220 114 8 chr3 70122449 70122581 -147914577 + L2 LINE L2 2025 2170 -1144 1000 133 48 76 chr3 70122610 70122820 -147914338 + MER20 DNA MER1_type 16 219 0 2075 286 56 19 chr3 70122840 70123791 -147913367 + L2 LINE L2 2317 3309 -4 368 238 101 85 chr3 70123872 70124061 -147913097 + MIR SINE MIR 56 247 -15 466 282 124 55 chr3 70124544 70124835 -147912323 - L2 LINE L2 0 3313 3003 659 229 49 0 chr3 70125147 70125291 -147911867 + MER103 DNA DNA 15 165 -1 715 269 17 0 chr3 70125845 70126020 -147911138 - MIR SINE MIR -13 249 72 566 262 33 27 chr3 70126544 70126727 -147910431 + MIR SINE MIR 71 254 -8 221 250 0 17 chr3 70127147 70127207 -147909951 - MIR SINE MIR -21 241 183 292 324 45 56 chr3 70128355 70128534 -147908624 - MIR SINE MIR -2 260 84 1271 291 44 8 chr3 70129742 70130106 -147907052 + MLT1K LTR MaLR 179 555 -33 722 180 47 0 chr3 70130107 70130235 -147906923 + L1PA16 LINE L1 6031 6164 -2 265 312 129 0 chr3 70130552 70130645 -147906513 - L2 LINE L2 -18 3254 3150 924 263 14 0 chr3 70130710 70130923 -147906235 + MER58A DNA MER1_type 9 224 0 500 316 23 6 chr3 70131977 70132148 -147905010 - MIR SINE MIR -11 251 78 703 330 30 9 chr3 70132169 70132399 -147904759 - MIR SINE MIR 0 262 28 404 265 206 6 chr3 70132630 70132800 -147904358 + MIR3 SINE MIR 4 207 -1 21 36 0 0 chr3 70133196 70133224 -147903934 + AT_rich Low_complexity Low_complexity 1 28 0 1839 123 7 0 chr3 70133318 70133603 -147903555 - L1PA13 LINE L1 -14 6149 5863 279 230 95 0 chr3 70134004 70134078 -147903080 - L2 LINE L2 -13 3300 3220 386 145 17 128 chr3 70135592 70135709 -147901449 + MER20 DNA MER1_type 4 107 -112 484 213 0 9 chr3 70135780 70135888 -147901270 + MER20 DNA MER1_type 113 219 0 22 0 0 0 chr3 70136207 70136229 -147900929 + AT_rich Low_complexity Low_complexity 1 22 0 199 163 116 0 chr3 70136303 70136346 -147900812 + L2 LINE L2 1361 1408 -1906 344 273 34 11 chr3 70136416 70136504 -147900654 + MIR SINE MIR 93 182 -80 251 193 0 18 chr3 70136600 70136657 -147900501 + MLT1K LTR MaLR 187 242 -346 854 114 8 0 chr3 70136704 70136836 -147900322 - L1PA12 LINE L1 -5687 1894 1762 450 61 30 0 chr3 70136836 70136902 -147900256 + L1PA13 LINE L1 6087 6154 -9 333 68 0 0 chr3 70137102 70137146 -147900012 + (CA)n Simple_repeat Simple_repeat 1 44 0 181 354 30 37 chr3 70137378 70137542 -147899616 + L2 LINE L2 2896 3058 -214 691 241 208 23 chr3 70138213 70138612 -147898546 - MER113 DNA MER1_type? -43 478 6 279 0 0 0 chr3 70138851 70138882 -147898276 + (TG)n Simple_repeat Simple_repeat 2 32 0 2225 124 0 0 chr3 70140346 70140645 -147896513 - AluSc SINE Alu -10 299 1 313 276 35 0 chr3 70140688 70140775 -147896383 + L2 LINE L2 2564 2653 -661 1310 217 54 11 chr3 70140825 70141194 -147895964 - L1MB7 LINE L1 0 6184 5800 809 329 61 60 chr3 70141325 70141915 -147895243 + L2 LINE L2 2716 3311 -2 1626 166 10 55 chr3 70142061 70142369 -147894789 - AluSx SINE Alu -12 300 7 24 32 0 0 chr3 70142719 70142750 -147894408 + AT_rich Low_complexity Low_complexity 1 31 0 285 75 0 0 chr3 70142830 70142870 -147894288 + (CA)n Simple_repeat Simple_repeat 2 41 0 307 161 310 11 chr3 70143680 70143767 -147893391 + MER81 DNA DNA 2 114 0 314 254 119 0 chr3 70143928 70144062 -147893096 + L1ME4a LINE L1 5969 6118 -3 21 0 0 0 chr3 70144063 70144084 -147893074 + AT_rich Low_complexity Low_complexity 1 21 0 470 307 163 20 chr3 70144916 70145407 -147891751 + L2 LINE L2 2518 3086 -227 349 244 31 63 chr3 70146488 70146615 -147890543 + L2 LINE L2 3172 3294 -19 395 315 64 25 chr3 70147840 70148043 -147889115 - MIR SINE MIR -44 218 8 185 333 28 28 chr3 70148118 70148226 -147888932 + MER5A DNA MER1_type 79 186 -3 559 303 91 5 chr3 70148814 70149035 -147888123 - MIR SINE MIR -13 249 10 641 335 50 6 chr3 70149435 70149679 -147887479 + MIR SINE MIR 3 262 0 249 33 0 0 chr3 70149798 70149828 -147887330 + (TA)n Simple_repeat Simple_repeat 1 30 0 299 234 196 9 chr3 70149851 70149958 -147887200 - MIR SINE MIR -134 128 2 229 305 53 11 chr3 70151236 70151331 -147885827 + L2 LINE L2 3203 3301 -12 456 327 54 18 chr3 70151380 70151685 -147885473 + L2 LINE L2 2698 3012 -301 357 243 92 46 chr3 70151713 70151865 -147885293 + L2 LINE L2 3152 3310 -3 946 260 28 29 chr3 70152696 70153164 -147883994 + MER113 DNA MER1_type? 7 511 -10 243 302 104 45 chr3 70154772 70154974 -147882184 - L2 LINE L2 -610 2704 2491 278 365 155 6 chr3 70155152 70155475 -147881683 - L2 LINE L2 -78 3194 2824 994 230 54 74 chr3 70155608 70155822 -147881336 - MER2 DNA MER2_type 0 345 139 2211 124 0 0 chr3 70155822 70156121 -147881037 + AluSx SINE Alu 1 299 -13 994 230 54 74 chr3 70156121 70156258 -147880900 - MER2 DNA MER2_type -206 139 1 358 215 92 8 chr3 70156318 70156448 -147880710 - MER113 DNA MER1_type? -372 149 9 273 332 56 47 chr3 70156584 70156798 -147880360 - L2 LINE L2 -675 2639 2424 2322 95 3 0 chr3 70157141 70157436 -147879722 + AluSp SINE Alu 2 297 -16 21 57 0 0 chr3 70157500 70157535 -147879623 + AT_rich Low_complexity Low_complexity 1 35 0 536 209 127 0 chr3 70158195 70158329 -147878829 - L1ME3 LINE L1 -1 6161 6011 23 68 0 0 chr3 70158350 70158394 -147878764 + AT_rich Low_complexity Low_complexity 1 44 0 181 277 21 0 chr3 70159372 70159419 -147877739 + L3 LINE CR1 1525 1572 -5 1975 137 0 7 chr3 70159604 70159958 -147877200 + AluJb SINE Alu 2 353 0 460 298 64 0 chr3 70160161 70160332 -147876826 - MER117 DNA MER1_type -1 196 15 447 303 166 41 chr3 70161391 70161964 -147875194 + L2 LINE L2 2593 3222 -50 1513 135 12 4 chr3 70162069 70162321 -147874837 + L1PB1 LINE L1 5896 6149 -2 2155 107 0 32 chr3 70163128 70163438 -147873720 - AluSx SINE Alu -12 300 1 420 223 58 53 chr3 70163608 70163796 -147873362 - Charlie8 DNA MER1_type -2156 261 73 337 199 34 209 chr3 70164225 70164282 -147872876 + MIR SINE MIR 21 86 -176 926 209 11 16 chr3 70164282 70164469 -147872689 - MER5A DNA MER1_type -3 186 1 337 199 34 209 chr3 70164469 70164623 -147872535 + MIR SINE MIR 86 205 -57 479 275 170 32 chr3 70164673 70164891 -147872267 + MIR SINE MIR 9 256 -6 1724 189 0 31 chr3 70165366 70165684 -147871474 + AluJb SINE Alu 1 308 -4 284 273 11 34 chr3 70166164 70166252 -147870906 - MER5A DNA MER1_type -1 188 103 2242 222 69 3 chr3 70166258 70166511 -147870647 - L1MB7 LINE L1 -11 6173 5938 1728 147 59 42 chr3 70166511 70166818 -147870340 - AluJb SINE Alu 0 312 1 2242 222 69 3 chr3 70166818 70167159 -147869999 - L1MB7 LINE L1 -246 5938 5540 269 269 13 13 chr3 70167159 70167237 -147869921 - MER5A DNA MER1_type -74 115 38 197 330 82 10 chr3 70167161 70167258 -147869900 + MER5A DNA MER1_type 85 188 -1 * 476 200 153 47 chr3 70168867 70169057 -147868101 - MLT1K LTR MaLR -13 575 366 216 0 0 0 chr3 70169366 70169390 -147867768 + (A)n Simple_repeat Simple_repeat 1 24 0 279 296 0 0 chr3 70169603 70169674 -147867484 + GA-rich Low_complexity Low_complexity 4 74 0 237 132 0 0 chr3 70169675 70169713 -147867445 + (GAAAA)n Simple_repeat Simple_repeat 2 39 0 1894 165 40 11 chr3 70170123 70170474 -147866684 + MLT1A1 LTR MaLR 5 365 0 337 339 94 24 chr3 70170521 70170648 -147866510 + L2 LINE L2 3137 3272 0 391 331 109 34 chr3 70171152 70171418 -147865740 - L2 LINE L2 -6 3266 2981 501 269 113 6 chr3 70172971 70173131 -147864027 + MIR SINE MIR 56 232 -30 446 258 40 40 chr3 70173249 70173400 -147863758 - MIR SINE MIR -12 250 100 698 226 38 17 chr3 70175412 70175621 -147861537 + MIR SINE MIR 1 262 0 277 193 46 73 chr3 70176645 70176754 -147860404 - MLT1K LTR MaLR -344 244 139 360 173 118 16 chr3 70177714 70177841 -147859317 + MER96B DNA MER1_type? 239 378 -39 420 313 23 0 chr3 70177927 70178058 -147859100 + MIR SINE MIR 118 251 -11 656 351 78 56 chr3 70178130 70179087 -147858071 - L2 LINE L2 -71 3201 2220 188 321 101 9 chr3 70179974 70180083 -147857075 + MIR3 SINE MIR 87 205 -3 446 232 9 0 chr3 70180098 70180210 -147856948 - MER58A DNA MER1_type -17 207 95 225 288 45 0 chr3 70180242 70180308 -147856850 - MER58A DNA MER1_type -9 98 30 180 0 0 0 chr3 70180577 70180597 -147856561 + (A)n Simple_repeat Simple_repeat 1 20 0 2050 135 3 3 chr3 70180974 70181271 -147855887 - AluSg SINE Alu -13 297 1 219 271 250 0 chr3 70181901 70181997 -147855161 - L2 LINE L2 0 3313 3194 365 253 76 24 chr3 70182320 70182482 -147854676 - MIR SINE MIR -62 146 12 758 228 58 5 chr3 70182718 70182907 -147854251 + MIR SINE MIR 58 256 -6 308 287 79 10 chr3 70183849 70183950 -147853208 + MIR SINE MIR 84 191 -71 481 263 38 86 chr3 70183974 70184183 -147852975 + MIR SINE MIR 35 233 -29 293 296 63 28 chr3 70184292 70184434 -147852724 + MIR3 SINE MIR 5 151 -57 449 346 55 68 chr3 70185302 70185741 -147851417 + L2 LINE L2 2808 3240 -32 334 306 48 32 chr3 70185824 70185948 -147851210 - MIR3 SINE MIR -82 126 1 587 254 18 88 chr3 70186570 70186798 -147850360 + MIR SINE MIR 43 254 -8 296 314 10 10 chr3 70186990 70187092 -147850066 + MIR SINE MIR 20 121 -141 535 314 13 44 chr3 70187923 70188152 -147849006 + MIR SINE MIR 2 223 -39 652 250 17 39 chr3 70188602 70188725 -147848433 + MER5B DNA MER1_type 2 121 -57 2125 100 0 62 chr3 70188725 70189045 -147848113 - AluSc SINE Alu -9 300 1 652 250 17 39 chr3 70189045 70189101 -147848057 + MER5B DNA MER1_type 121 177 -1 692 256 54 12 chr3 70189110 70189278 -147847880 - MER5A DNA MER1_type 0 189 15 431 303 72 81 chr3 70189324 70189606 -147847552 + L2 LINE L2 2694 2968 -304 1597 179 33 0 chr3 70189606 70189880 -147847278 - AluJo SINE Alu -29 283 1 431 303 72 81 chr3 70189880 70190111 -147847047 + L2 LINE L2 2968 3199 -73 229 309 27 36 chr3 70190165 70190275 -147846883 + MIR SINE MIR 136 244 -18 187 274 0 0 chr3 70190419 70190470 -147846688 + MIR SINE MIR 104 154 -108 221 343 27 0 chr3 70190480 70190553 -147846605 - L2 LINE L2 -7 3265 3191 21 0 0 0 chr3 70190626 70190647 -147846511 + AT_rich Low_complexity Low_complexity 1 21 0 209 278 19 0 chr3 70191078 70191132 -147846026 + (TG)n Simple_repeat Simple_repeat 2 56 0 23 33 0 0 chr3 70191893 70191923 -147845235 + AT_rich Low_complexity Low_complexity 1 30 0 489 226 84 111 chr3 70191928 70192138 -147845020 - MLT1I LTR MaLR -3 418 232 22 35 0 0 chr3 70192234 70192263 -147844895 + AT_rich Low_complexity Low_complexity 1 29 0 233 254 18 0 chr3 70193245 70193300 -147843858 + L2 LINE L2 3214 3269 -3 200 167 19 19 chr3 70194243 70194297 -147842861 + A-rich Low_complexity Low_complexity 1 54 0 1117 194 15 0 chr3 70194401 70194602 -147842556 + MER20 DNA MER1_type 16 219 0 1133 99 0 0 chr3 70196437 70196589 -147840569 + AluSc SINE Alu 155 306 -3 3000 117 67 0 chr3 70196773 70197209 -147839949 + MER4C LTR ERV1 1 465 0 245 309 165 10 chr3 70197210 70197307 -147839851 - L2 LINE L2 0 3272 3161 972 213 41 5 chr3 70197602 70197799 -147839359 + MER3 DNA MER1_type 6 209 0 876 238 49 6 chr3 70197808 70198016 -147839142 - MIR SINE MIR -49 213 1 1240 133 0 0 chr3 70199054 70199234 -147837924 - AluJo SINE Alu -4 308 129 1700 77 9 14 chr3 70199291 70199513 -147837645 - L1PB1 LINE L1 -2 6149 5929 891 139 0 35 chr3 70199513 70199657 -147837501 - AluJo SINE Alu -171 141 3 551 278 23 45 chr3 70199669 70199845 -147837313 - MER5B DNA MER1_type -6 172 1 1183 171 0 60 chr3 70199856 70199900 -147837258 + MER58A DNA MER1_type 20 65 -2355 1847 143 43 0 chr3 70199900 70200180 -147836978 - AluSq SINE Alu -21 292 1 1183 171 0 60 chr3 70200180 70200352 -147836806 + MER58A DNA MER1_type 65 223 -1 329 185 0 0 chr3 70200453 70200507 -147836651 + MER112 DNA MER1_type 2 55 -205 872 207 29 34 chr3 70200508 70200716 -147836442 + MLT1F1 LTR MaLR 1 207 -360 402 311 36 21 chr3 70200942 70201135 -147836023 - MIR SINE MIR -8 254 59 1148 166 28 47 chr3 70201137 70201390 -147835768 - MLT1A1 LTR MaLR 0 365 118 579 171 0 0 chr3 70201490 70201619 -147835539 + G-rich Low_complexity Low_complexity 1 129 0 465 303 38 32 chr3 70201780 70201965 -147835193 - L2 LINE L2 -22 3291 3106 3791 75 2 2 chr3 70203150 70203603 -147833555 + MLT2A2 LTR ERVL 1 453 0 254 333 104 30 chr3 70203611 70203908 -147833250 + L2 LINE L2 2658 2976 -338 1982 182 55 50 chr3 70204202 70204566 -147832592 - MLT1C LTR MaLR 0 467 106 1178 138 61 0 chr3 70204566 70204747 -147832411 + L1PB4 LINE L1 5961 6152 -4 1982 182 55 50 chr3 70204747 70204816 -147832342 - MLT1C LTR MaLR -361 106 29 2032 137 52 24 chr3 70204816 70205144 -147832014 + MER1B DNA MER1_type 1 337 0 1982 182 55 50 chr3 70205144 70205164 -147831994 - MLT1C LTR MaLR -438 29 11 336 304 0 0 chr3 70205174 70205253 -147831905 + L2 LINE L2 3194 3272 0 1035 192 106 36 chr3 70205329 70205631 -147831527 + MER33 DNA MER1_type 2 324 0 1619 205 7 3 chr3 70205666 70205969 -147831189 - AluJb SINE Alu -8 304 1 294 167 44 56 chr3 70206026 70206116 -147831042 + (TATATG)n Simple_repeat Simple_repeat 2 90 0 514 270 146 16 chr3 70206117 70206302 -147830856 - MIR SINE MIR -26 236 28 25 0 0 0 chr3 70207764 70207789 -147829369 + AT_rich Low_complexity Low_complexity 1 25 0 251 275 119 62 chr3 70207862 70208055 -147829103 - L2 LINE L2 -556 2758 2555 * 330 340 21 0 chr3 70208032 70208173 -147828985 + MIR SINE MIR 66 209 -53 244 363 0 26 chr3 70209183 70209296 -147827862 + L2 LINE L2 3203 3312 -1 251 345 100 18 chr3 70209317 70209427 -147827731 + L2 LINE L2 3073 3191 -81 438 313 139 31 chr3 70210538 70210976 -147826182 - L2 LINE L2 -14 3258 2783 4867 205 34 16 chr3 70211263 70212341 -147824817 - L1MD2 LINE L1 -1 7766 6197 259 259 176 0 chr3 70212349 70212434 -147824724 - MIR SINE MIR -109 153 54 269 301 52 74 chr3 70212517 70212746 -147824412 + MLT1L LTR MaLR 97 320 -295 282 313 61 9 chr3 70213262 70213377 -147823781 - MIR3 SINE MIR -17 191 71 296 285 7 76 chr3 70214856 70215000 -147822158 - MIR SINE MIR -50 212 79 219 213 43 0 chr3 70215016 70215063 -147822095 - L2 LINE L2 -2 3311 3263 878 236 23 41 chr3 70215136 70215356 -147821802 - MER20 DNA MER1_type 0 219 4 181 200 0 0 chr3 70215502 70215537 -147821621 - L2 LINE L2 -10 3303 3269 187 302 35 23 chr3 70215540 70215626 -147821532 - MIR3 SINE MIR -120 88 2 343 153 24 71 chr3 70217190 70217275 -147819883 + Charlie8 DNA MER1_type 185 265 -2152 4226 158 22 10 chr3 70217855 70218546 -147818612 + L1MC1 LINE L1 5635 6333 0 2699 101 22 0 chr3 70218621 70218988 -147818170 + L1PA11 LINE L1 5799 6173 -1 247 310 58 47 chr3 70219159 70219208 -147817950 + MER5B DNA MER1_type 6 53 -125 210 91 0 0 chr3 70219208 70219241 -147817917 + (TA)n Simple_repeat Simple_repeat 2 34 0 247 310 58 47 chr3 70219241 70219362 -147817796 + MER5B DNA MER1_type 53 178 0 260 168 317 0 chr3 70219438 70219539 -147817619 - MER117 DNA MER1_type -55 142 10 403 278 104 7 chr3 70219660 70219804 -147817354 + L2 LINE L2 2550 2707 -607 560 333 37 54 chr3 70220009 70220490 -147816668 + L2 LINE L2 2837 3309 -4 1281 130 20 87 chr3 70220520 70220774 -147816384 + AluSx SINE Alu 2 238 -74 330 304 0 0 chr3 70220809 70220911 -147816247 + G-rich Low_complexity Low_complexity 1 102 0 445 237 86 26 chr3 70221045 70221197 -147815961 + ERVL LTR ERVL 4744 4904 -860 2177 121 66 16 chr3 70221445 70221808 -147815350 + LTR49 LTR ERV1 1 381 -214 973 161 19 0 chr3 70221812 70221967 -147815191 - AluJb SINE Alu -8 304 147 1198 132 52 14 chr3 70221999 70222212 -147814946 + LTR29 LTR ERV1 402 622 0 1578 230 220 15 chr3 70222255 70222915 -147814243 + LTR50 LTR ERVL 1 795 0 233 363 29 20 chr3 70223142 70223244 -147813914 + MIR SINE MIR 5 107 -155 6041 111 26 2 chr3 70223258 70224218 -147812940 - L1PB1 LINE L1 -1 6150 5172 234 276 32 103 chr3 70224231 70224387 -147812771 + MIR SINE MIR 118 262 0 371 191 0 0 chr3 70224750 70224834 -147812324 + CT-rich Low_complexity Low_complexity 1 84 0 218 156 22 0 chr3 70224848 70224893 -147812265 + C-rich Low_complexity Low_complexity 1 46 0 303 266 154 48 chr3 70224997 70225185 -147811973 + L1M2 LINE L1 1200 1407 -5442 334 227 126 19 chr3 70225980 70226123 -147811035 + MIR3 SINE MIR 50 199 -42 1934 148 3 3 chr3 70226737 70227040 -147810118 + AluSg SINE Alu 1 303 -7 1537 136 3 75 chr3 70227085 70227379 -147809779 + AluJb SINE Alu 40 312 0 734 344 126 19 chr3 70227437 70227973 -147809185 + L2 LINE L2 2709 3310 -3 2147 100 0 21 chr3 70228327 70228637 -147808521 + AluSq SINE Alu 7 313 0 1656 244 129 40 chr3 70228849 70229353 -147807805 + MLT1H LTR MaLR 1 549 0 269 258 0 15 chr3 70230708 70230774 -147806384 - MIR SINE MIR -146 116 52 9814 146 14 8 chr3 70231069 70233079 -147804079 + L1M3 LINE L1 3552 5573 -610 870 222 16 5 chr3 70233134 70233323 -147803835 + MER58A DNA MER1_type 2 192 -32 607 318 55 17 chr3 70233879 70234115 -147803043 + MIR SINE MIR 18 262 0 1712 144 55 21 chr3 70234964 70235255 -147801903 - AluJb SINE Alu -11 301 1 598 324 90 36 chr3 70235663 70235996 -147801162 - L2 LINE L2 0 3313 2963 507 238 55 69 chr3 70236018 70236220 -147800938 + MLT1E LTR MaLR 54 252 -402 1579 186 0 21 chr3 70236230 70236520 -147800638 - AluJo SINE Alu -28 284 1 1204 214 24 0 chr3 70236604 70236856 -147800302 + MLT1E LTR MaLR 336 593 0 317 217 72 29 chr3 70236968 70237037 -147800121 + L2 LINE L2 3240 3311 -2 2394 51 3 70 chr3 70237919 70238250 -147798908 + AluY SINE Alu 1 309 -2 1536 184 52 0 chr3 70238594 70238844 -147798314 - AluJb SINE Alu -22 290 28 2191 126 3 10 chr3 70239947 70240256 -147796902 + AluSx SINE Alu 1 307 -5 361 250 40 0 chr3 70240267 70240367 -147796791 - MER113 DNA MER1_type? -414 107 4 819 274 78 39 chr3 70240456 70241044 -147796114 - L1ME4a LINE L1 -28 6093 5483 1903 108 97 0 chr3 70241329 70241598 -147795560 - AluSx SINE Alu -17 295 1 204 200 0 0 chr3 70242013 70242053 -147795105 + (TGG)n Simple_repeat Simple_repeat 3 42 0 35 24 0 0 chr3 70242104 70242146 -147795012 + AT_rich Low_complexity Low_complexity 1 42 0 316 309 64 11 chr3 70242393 70242487 -147794671 - L2 LINE L2 0 3272 3174 282 292 8 62 chr3 70242511 70242641 -147794517 - MER5A DNA MER1_type -23 166 44 221 150 0 0 chr3 70242664 70242704 -147794454 + L2 LINE L2 3274 3313 0 568 157 0 43 chr3 70243048 70243163 -147793995 - ORSL DNA AcHobo -1 274 165 486 270 86 0 chr3 70243756 70243908 -147793250 + MIR SINE MIR 35 199 -63 516 193 132 0 chr3 70243933 70244047 -147793111 + MIR SINE MIR 26 154 -108 1010 173 79 14 chr3 70244063 70244211 -147792947 - AluJb SINE Alu -21 291 123 216 0 0 0 chr3 70244211 70244235 -147792923 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 1010 173 79 14 chr3 70244235 70244300 -147792858 - AluJb SINE Alu -189 123 64 523 200 24 40 chr3 70244666 70244791 -147792367 + MER5A DNA MER1_type 67 189 0 2067 115 19 26 chr3 70244798 70245111 -147792047 - AluSx SINE Alu -1 311 1 393 211 14 122 chr3 70245283 70245430 -147791728 + MER5B DNA MER1_type 3 133 -45 243 178 0 0 chr3 70245467 70245512 -147791646 + MIR SINE MIR 88 132 -130 541 259 9 7 chr3 70245514 70245672 -147791486 - L1ME3 LINE L1 -36 6126 5976 295 232 0 0 chr3 70245673 70245729 -147791429 - MER5B DNA MER1_type -120 58 3 710 243 50 14 chr3 70246090 70246531 -147790627 - Charlie4a DNA MER1_type -2 506 17 576 265 119 45 chr3 70246997 70247600 -147789558 - L1ME3 LINE L1 -189 5932 5285 256 255 92 64 chr3 70247888 70248029 -147789129 - MIR SINE MIR -88 174 30 329 281 73 0 chr3 70248131 70248227 -147788931 - MIR SINE MIR 0 262 160 2213 184 44 2 chr3 70248358 70248792 -147788366 + MER66A LTR ERV1 27 478 0 257 246 0 0 chr3 70249052 70249113 -147788045 - MIR SINE MIR -88 174 114 192 77 0 0 chr3 70249222 70249248 -147787910 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 664 239 38 75 chr3 70249883 70250309 -147786849 + L1MC5 LINE L1 7496 7905 -56 460 195 12 0 chr3 70250315 70250397 -147786761 - AluSq SINE Alu -141 172 90 429 20 0 0 chr3 70250399 70250449 -147786709 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 34 0 0 0 chr3 70250450 70250484 -147786674 + AT_rich Low_complexity Low_complexity 1 34 0 2368 69 38 0 chr3 70250803 70251094 -147786064 - AluY SINE Alu -9 302 1 1916 158 21 0 chr3 70251118 70251403 -147785755 - AluSx SINE Alu -21 291 1 958 292 180 23 chr3 70252423 70253317 -147783841 + L2 LINE L2 2265 3294 -19 189 0 0 0 chr3 70253327 70253348 -147783810 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 647 337 28 68 chr3 70254146 70254655 -147782503 + L2 LINE L2 2740 3227 -45 744 316 67 14 chr3 70254829 70255190 -147781968 + MLT1I LTR MaLR 27 406 -3 254 283 71 145 chr3 70255248 70255370 -147781788 - MIR SINE MIR 0 262 133 1619 186 7 28 chr3 70255370 70255687 -147781471 - AluJo SINE Alu 0 311 1 254 283 71 145 chr3 70255687 70255846 -147781312 - MIR SINE MIR -129 133 1 2422 92 0 0 chr3 70255861 70256164 -147780994 - AluY SINE Alu -7 304 2 189 147 0 0 chr3 70256183 70256217 -147780941 + (A)n Simple_repeat Simple_repeat 1 34 0 812 191 59 50 chr3 70256752 70256972 -147780186 - MIR SINE MIR -9 253 32 535 323 75 0 chr3 70257046 70257232 -147779926 - MIR SINE MIR -33 229 30 414 184 37 159 chr3 70257808 70258053 -147779105 - MER20 DNA MER1_type -4 215 1 271 250 0 14 chr3 70259850 70259922 -147777236 + L2 LINE L2 2702 2772 -542 259 324 9 19 chr3 70259932 70260037 -147777121 - MIR SINE MIR -138 124 21 653 281 25 0 chr3 70260220 70260416 -147776742 + MER3 DNA MER1_type 9 209 0 713 281 60 14 chr3 70260510 70260727 -147776431 + MIR SINE MIR 36 262 0 375 288 8 17 chr3 70260916 70261034 -147776124 - MIR SINE MIR -100 162 46 826 272 113 48 chr3 70262035 70262451 -147774707 + L1ME3A LINE L1 5512 5954 -216 405 302 8 40 chr3 70263108 70263175 -147773983 - MIR SINE MIR -121 141 78 494 67 67 0 chr3 70263175 70263250 -147773908 - MADE1 DNA Mariner 0 80 1 405 302 8 40 chr3 70263250 70263308 -147773850 - MIR SINE MIR -184 78 20 219 227 133 0 chr3 70263979 70264054 -147773104 + MIR SINE MIR 80 164 -98 639 309 15 15 chr3 70264522 70264726 -147772432 + MIR SINE MIR 5 208 -54 412 283 128 68 chr3 70264864 70265246 -147771912 + MLT1I LTR MaLR 1 405 -4 831 171 26 52 chr3 70265267 70265460 -147771698 + MER20 DNA MER1_type 1 188 -31 181 338 59 0 chr3 70266022 70266090 -147771068 - MIR SINE MIR -102 106 35 247 270 67 22 chr3 70266243 70266332 -147770826 + MIR SINE MIR 168 260 -2 319 299 99 55 chr3 70266735 70267079 -147770079 - L2 LINE L2 -11 3302 2944 1027 251 120 54 chr3 70267147 70267648 -147769510 + MLT1F1 LTR MaLR 1 559 -8 223 173 19 0 chr3 70267902 70267954 -147769204 - MIR SINE MIR -131 131 79 1635 122 14 5 chr3 70268746 70269182 -147767976 - L1PB2 LINE L1 -2 6149 5660 237 257 29 0 chr3 70269195 70269265 -147767893 - L1ME3 LINE L1 -45 6117 6046 694 208 7 0 chr3 70269266 70269410 -147767748 + MER3 DNA MER1_type 1 145 -64 318 148 0 0 chr3 70269416 70269470 -147767688 - MER3 DNA MER1_type -135 74 21 1234 243 43 25 chr3 70269480 70269884 -147767274 - L1ME3 LINE L1 -147 6027 5622 358 274 201 9 chr3 70270005 70270334 -147766824 + L1ME3A LINE L1 5557 5948 -222 21 0 0 0 chr3 70270542 70270563 -147766595 + AT_rich Low_complexity Low_complexity 1 21 0 511 313 36 47 chr3 70270575 70270853 -147766305 + MLT1J LTR MaLR 2 276 -235 338 240 138 18 chr3 70271133 70271291 -147765867 + MIR3 SINE MIR 34 166 -42 2014 132 7 10 chr3 70271905 70272209 -147764949 + AluSg SINE Alu 1 303 -7 1552 123 3 92 chr3 70272256 70272549 -147764609 + AluJb SINE Alu 42 308 -4 800 338 127 20 chr3 70272607 70273143 -147764015 + L2 LINE L2 2709 3310 -3 2122 107 0 21 chr3 70273496 70273806 -147763352 + AluSq SINE Alu 7 313 0 1456 244 129 40 chr3 70274018 70274522 -147762636 + MLT1H LTR MaLR 1 549 0 286 277 0 0 chr3 70275876 70275941 -147761217 - MIR SINE MIR -146 116 52 9802 145 13 7 chr3 70276235 70278244 -147758914 + L1M3 LINE L1 3552 5573 -610 886 217 16 5 chr3 70278299 70278488 -147758670 + MER58A DNA MER1_type 2 192 -32 627 309 55 17 chr3 70279044 70279280 -147757878 + MIR SINE MIR 18 262 0 1722 144 55 20 chr3 70280129 70280421 -147756737 - AluJb SINE Alu -10 302 1 585 327 90 36 chr3 70280829 70281162 -147755996 - L2 LINE L2 0 3313 2963 505 238 55 69 chr3 70281184 70281386 -147755772 + MLT1E LTR MaLR 54 252 -402 1559 186 0 21 chr3 70281396 70281686 -147755472 - AluJo SINE Alu -28 284 1 1191 214 24 0 chr3 70281770 70282022 -147755136 + MLT1E LTR MaLR 336 593 0 292 232 72 29 chr3 70282134 70282203 -147754955 + L2 LINE L2 3240 3311 -2 2398 48 3 78 chr3 70283087 70283422 -147753736 + AluY SINE Alu 1 310 -1 1536 184 52 0 chr3 70283766 70284016 -147753142 - AluJb SINE Alu -22 290 28 2216 123 3 10 chr3 70285118 70285427 -147751731 + AluSx SINE Alu 1 307 -5 361 250 40 0 chr3 70285438 70285538 -147751620 - MER113 DNA MER1_type? -414 107 4 819 274 78 39 chr3 70285627 70286215 -147750943 - L1ME4a LINE L1 -28 6093 5483 1888 112 97 0 chr3 70286500 70286769 -147750389 - AluSx SINE Alu -17 295 1 204 200 0 0 chr3 70287184 70287224 -147749934 + (TGG)n Simple_repeat Simple_repeat 3 42 0 35 24 0 0 chr3 70287275 70287317 -147749841 + AT_rich Low_complexity Low_complexity 1 42 0 316 309 64 11 chr3 70287564 70287658 -147749500 - L2 LINE L2 0 3272 3174 281 292 8 62 chr3 70287682 70287812 -147749346 - MER5A DNA MER1_type -23 166 44 221 150 0 0 chr3 70287835 70287875 -147749283 + L2 LINE L2 3274 3313 0 568 157 0 43 chr3 70288219 70288334 -147748824 - ORSL DNA AcHobo -1 274 165 486 270 86 0 chr3 70288927 70289079 -147748079 + MIR SINE MIR 35 199 -63 516 193 132 0 chr3 70289104 70289218 -147747940 + MIR SINE MIR 26 154 -108 1640 159 47 0 chr3 70289234 70289382 -147747776 - AluJb SINE Alu -21 291 151 225 0 0 0 chr3 70289382 70289407 -147747751 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1640 159 47 0 chr3 70289407 70289534 -147747624 - AluJb SINE Alu -161 151 3 993 224 9 28 chr3 70289541 70289755 -147747403 - AluJo SINE Alu -19 293 84 274 205 115 26 chr3 70289768 70289846 -147747312 + MIR SINE MIR 178 262 0 310 301 0 58 chr3 70289981 70290084 -147747074 + L2 LINE L2 3137 3233 -39 212 170 21 21 chr3 70290126 70290173 -147746985 - MIR SINE MIR -64 144 98 327 197 0 0 chr3 70291026 70291087 -147746071 + MIR SINE MIR 62 122 -86 2081 111 6 43 chr3 70291090 70291415 -147745743 - AluSq SINE Alu 0 313 1 471 339 108 54 chr3 70291537 70292171 -147744987 - L2 LINE L2 -35 3237 2583 575 262 34 29 chr3 70292321 70292527 -147744631 + L2 LINE L2 3107 3313 0 2797 73 3 14 chr3 70292742 70293110 -147744048 - THE1B LTR MaLR 0 364 1 719 260 18 6 chr3 70294143 70294312 -147742846 + MIR SINE MIR 10 180 -82 197 289 182 0 chr3 70295298 70295430 -147741728 - MIR SINE MIR -58 204 45 645 165 95 51 chr3 70295441 70295599 -147741559 - FRAM SINE Alu -11 165 1 243 203 0 17 chr3 70296305 70296364 -147740794 + LTR67 LTR ERVL 500 557 0 182 146 0 36 chr3 70296407 70296462 -147740696 + (CAAAAA)n Simple_repeat Simple_repeat 2 54 0 1167 180 112 56 chr3 70297229 70297423 -147739735 - MER2 DNA MER2_type 0 344 123 1894 162 3 3 chr3 70297423 70297725 -147739433 + AluJb SINE Alu 1 302 -10 1167 180 112 56 chr3 70297725 70297853 -147739305 - MER2 DNA MER2_type -221 123 4 967 247 82 31 chr3 70298140 70298590 -147738568 + MLT1K LTR MaLR 3 475 -1 522 246 109 0 chr3 70300570 70300708 -147736450 + MIR SINE MIR 78 230 -32 1820 188 42 30 chr3 70301116 70301547 -147735611 - MER63B DNA MER1_type 0 436 1 255 318 11 11 chr3 70301974 70302062 -147735096 + L2 LINE L2 3185 3272 0 201 316 0 26 chr3 70302420 70302496 -147734662 + MIR SINE MIR 118 191 -71 23 33 0 0 chr3 70302508 70302538 -147734620 + AT_rich Low_complexity Low_complexity 1 30 0 1203 173 67 14 chr3 70302800 70303098 -147734060 - MER33 DNA MER1_type -22 302 1 248 330 50 0 chr3 70303583 70303683 -147733475 - L2 LINE L2 -2 3270 3166 219 227 50 67 chr3 70303694 70303813 -147733345 - L2 LINE L2 -55 3258 3142 685 241 92 0 chr3 70304084 70304258 -147732900 + MIR SINE MIR 72 261 -1 2073 113 7 40 chr3 70304275 70304576 -147732582 - AluSx SINE Alu -17 295 5 185 244 89 0 chr3 70304583 70304628 -147732530 + L2 LINE L2 2919 2967 -305 489 271 46 60 chr3 70304794 70305029 -147732129 + MIR SINE MIR 3 230 -32 500 303 82 12 chr3 70305049 70305302 -147731856 + L2 LINE L2 2788 3066 -247 2167 135 0 0 chr3 70305467 70305770 -147731388 - AluSx SINE Alu -5 307 5 524 283 27 0 chr3 70305784 70305971 -147731187 - L1ME3A LINE L1 -71 6099 5908 457 224 43 0 chr3 70305974 70306090 -147731068 - L1ME3A LINE L1 -304 5860 5740 341 288 7 118 chr3 70306126 70306279 -147730879 + L2 LINE L2 3137 3272 0 309 330 52 0 chr3 70306284 70306381 -147730777 - L2 LINE L2 -22 3250 3149 336 252 110 124 chr3 70306978 70307196 -147729962 + MIR SINE MIR 33 247 -15 269 220 64 64 chr3 70307635 70307744 -147729414 + MLT1J LTR MaLR 403 511 0 23 0 0 0 chr3 70308218 70308241 -147728917 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 70308926 70308949 -147728209 + AT_rich Low_complexity Low_complexity 1 23 0 4750 209 88 21 chr3 70309507 70310070 -147727088 - Charlie1a DNA MER1_type -1312 1449 925 2020 130 0 57 chr3 70310070 70310401 -147726757 - AluSx SINE Alu 0 312 1 4750 209 88 21 chr3 70310401 70311161 -147725997 - Charlie1a DNA MER1_type -1836 925 38 267 312 54 48 chr3 70311221 70311407 -147725751 - L2 LINE L2 -416 2898 2712 2329 67 0 0 chr3 70311421 70311727 -147725431 + AluY SINE Alu 1 306 0 1215 153 9 13 chr3 70312551 70312780 -147724378 + L1MC2 LINE L1 6108 6335 -9 400 340 6 19 chr3 70313653 70313809 -147723349 + MER5B DNA MER1_type 25 178 0 1817 113 62 0 chr3 70313956 70314212 -147722946 - AluSx SINE Alu -17 295 24 389 354 61 6 chr3 70314843 70315024 -147722134 + L3 LINE CR1 1266 1456 -121 661 129 0 0 chr3 70315128 70315221 -147721937 - AluJ/FLAM SINE Alu -219 93 1 1076 186 29 14 chr3 70315267 70315477 -147721681 + AluJo SINE Alu 86 298 -14 1049 204 40 89 chr3 70315486 70315957 -147721201 + LTR37B LTR ERV1 21 468 0 198 234 47 47 chr3 70315957 70316021 -147721137 + MIR SINE MIR 198 261 -1 189 0 0 0 chr3 70316888 70316909 -147720249 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 203 254 0 0 chr3 70317329 70317384 -147719774 + (TCCA)n Simple_repeat Simple_repeat 3 57 0 475 231 60 26 chr3 70317386 70317503 -147719655 - L2 LINE L2 -9 3304 3184 2357 108 0 0 chr3 70317802 70318108 -147719050 - AluSx SINE Alu -6 306 1 354 209 12 47 chr3 70318567 70318653 -147718505 + MIR SINE MIR 28 110 -152 362 321 98 12 chr3 70318689 70318935 -147718223 + L1MC5 LINE L1 5673 5939 -1869 2585 216 59 69 chr3 70319025 70320263 -147716895 + L1MC5 LINE L1 6694 7919 -42 641 225 156 31 chr3 70320666 70320955 -147716203 + Charlie7 DNA MER1_type 430 754 -1858 2150 136 3 0 chr3 70320979 70321289 -147715869 + AluSx SINE Alu 1 311 -1 1536 184 4 15 chr3 70321432 70321693 -147715465 + AluJo SINE Alu 25 282 -30 192 179 0 0 chr3 70321699 70321738 -147715420 + (CA)n Simple_repeat Simple_repeat 2 40 0 904 242 92 60 chr3 70321802 70322060 -147715098 + Charlie7 DNA MER1_type 1971 2219 -393 1872 158 0 3 chr3 70322060 70322344 -147714814 + AluJb SINE Alu 1 283 -29 904 242 92 60 chr3 70322344 70322704 -147714454 + Charlie7 DNA MER1_type 2219 2609 -3 593 305 119 4 chr3 70322709 70322935 -147714223 + MIR SINE MIR 11 262 0 233 213 0 0 chr3 70322938 70322985 -147714173 + (CAT)n Simple_repeat Simple_repeat 2 48 0 22 0 0 0 chr3 70323020 70323042 -147714116 + AT_rich Low_complexity Low_complexity 1 22 0 345 371 69 6 chr3 70324247 70324406 -147712752 - MIR SINE MIR -45 217 49 203 292 10 21 chr3 70324851 70324947 -147712211 - MIR SINE MIR 0 262 168 * 479 248 9 9 chr3 70324935 70325048 -147712110 - L2 LINE L2 -9 3304 3192 269 201 115 50 chr3 70325255 70325394 -147711764 + L1ME4a LINE L1 5955 6102 -19 309 289 125 10 chr3 70325643 70325747 -147711411 + MIR3 SINE MIR 56 171 -37 827 196 98 0 chr3 70326247 70326431 -147710727 + MER3 DNA MER1_type 8 209 0 521 199 140 99 chr3 70326449 70326620 -147710538 + MER5A DNA MER1_type 12 189 0 455 247 207 17 chr3 70326799 70326973 -147710185 + MIR SINE MIR 43 249 -13 1925 155 3 23 chr3 70327249 70327552 -147709606 - AluJb SINE Alu -15 297 1 1771 195 3 10 chr3 70327648 70327946 -147709212 - AluJo SINE Alu -16 296 1 446 224 152 16 chr3 70327981 70328106 -147709052 + MIR SINE MIR 16 157 -105 181 146 0 73 chr3 70328796 70328851 -147708307 + (CGTG)n Simple_repeat Simple_repeat 4 54 0 486 320 55 17 chr3 70329162 70329343 -147707815 + MIR SINE MIR 6 193 -69 472 333 18 27 chr3 70329371 70329596 -147707562 - MIR SINE MIR -31 231 9 225 0 0 0 chr3 70329827 70329852 -147707306 + (A)n Simple_repeat Simple_repeat 1 25 0 217 316 176 21 chr3 70330333 70330520 -147706638 + L2 LINE L2 3080 3295 -18 678 346 70 12 chr3 70330653 70330980 -147706178 - L2 LINE L2 0 3272 2927 1660 207 13 0 chr3 70331162 70331462 -147705696 - 7SLRNA srpRNA srpRNA -11 309 6 210 320 100 10 chr3 70332356 70332456 -147704702 + L2 LINE L2 3163 3271 -1 2388 87 15 0 chr3 70332546 70332879 -147704279 + L1PA13 LINE L1 5826 6163 0 417 244 44 0 chr3 70333015 70333105 -147704053 - L2 LINE L2 0 3272 3179 1637 169 119 46 chr3 70333179 70333677 -147703481 + MLT2A2 LTR ERVL 1 554 0 286 340 31 10 chr3 70333693 70333790 -147703368 + L2 LINE L2 2995 3093 -179 303 219 68 0 chr3 70334369 70334442 -147702716 + MIR SINE MIR 5 82 -180 619 281 59 21 chr3 70334604 70334842 -147702316 + MIR SINE MIR 16 262 0 1335 280 86 0 chr3 70334901 70335319 -147701839 + LTR40a LTR ERVL 62 515 -4 291 54 0 0 chr3 70335330 70335367 -147701791 + (CAT)n Simple_repeat Simple_repeat 3 39 0 298 260 171 44 chr3 70336042 70336223 -147700935 + MIR SINE MIR 15 218 -44 479 315 119 9 chr3 70336692 70336911 -147700247 - MIR SINE MIR 0 262 20 209 371 11 51 chr3 70337369 70337547 -147699611 + L2 LINE L2 2921 3091 -181 662 198 94 61 chr3 70338407 70338619 -147698539 + MER20 DNA MER1_type 1 219 0 452 253 127 19 chr3 70338624 70338782 -147698376 + MIR SINE MIR 78 252 -10 324 324 109 52 chr3 70338858 70339244 -147697914 + L2 LINE L2 2830 3237 -76 204 97 0 0 chr3 70339822 70339853 -147697305 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1061 158 31 54 chr3 70340054 70340276 -147696882 - MER20 DNA MER1_type -1 218 2 382 274 23 89 chr3 70340281 70340540 -147696618 - MIR SINE MIR -15 247 6 196 239 15 75 chr3 70340621 70340688 -147696470 - L2 LINE L2 -5 3267 3205 1237 277 92 2 chr3 70340709 70341156 -147696002 + LTR33 LTR ERVL 19 505 -16 1222 162 9 40 chr3 70341374 70341596 -147695562 + AluJo SINE Alu 86 300 -12 510 246 49 0 chr3 70341616 70341738 -147695420 - MIR SINE MIR -70 192 65 2136 139 0 0 chr3 70342307 70342610 -147694548 - AluSq SINE Alu -10 303 1 2284 122 0 3 chr3 70342910 70343221 -147693937 - AluSg SINE Alu 0 310 1 1863 327 54 31 chr3 70343588 70344854 -147692304 + L2 LINE L2 2009 3309 -4 294 271 212 0 chr3 70345094 70345212 -147691946 + MIR3 SINE MIR 45 187 -21 24 0 0 0 chr3 70345436 70345460 -147691698 + AT_rich Low_complexity Low_complexity 1 24 0 285 229 39 39 chr3 70347190 70347343 -147689815 + L1ME4a LINE L1 5966 6118 -3 3634 213 19 5 chr3 70348024 70348894 -147688264 + L1P LINE L1 4499 5381 -765 276 344 52 0 chr3 70348894 70348990 -147688168 + L2 LINE L2 3172 3272 0 509 168 101 88 chr3 70349289 70349436 -147687722 - Charlie5 DNA MER1_type -10 2575 2422 634 110 20 10 chr3 70349436 70349536 -147687622 + U6 snRNA snRNA 3 103 -4 509 168 101 88 chr3 70349536 70349626 -147687532 - Charlie5 DNA MER1_type -163 2422 2335 1196 235 69 12 chr3 70350167 70350575 -147686583 + L1ME3A LINE L1 5657 6087 -83 3183 199 47 35 chr3 70353377 70354242 -147682916 + L1ME2 LINE L1 5280 6155 -9 384 22 0 0 chr3 70354449 70354494 -147682664 + (TG)n Simple_repeat Simple_repeat 2 46 0 2982 175 72 14 chr3 70354496 70355066 -147682092 + MER77 LTR ERV1 3 605 0 183 80 0 0 chr3 70355078 70355103 -147682055 + (CA)n Simple_repeat Simple_repeat 1 25 0 262 333 42 21 chr3 70355582 70355678 -147681480 + L2 LINE L2 3142 3239 -33 351 342 0 9 chr3 70355712 70355826 -147681332 + L2 LINE L2 2896 3008 -264 2222 122 0 6 chr3 70355836 70356147 -147681011 - AluSc SINE Alu 0 309 1 1802 231 79 27 chr3 70356224 70356355 -147680803 - MLT1E2 LTR MaLR 0 626 503 1543 164 51 128 chr3 70356355 70356861 -147680297 - MLT1C LTR MaLR 0 467 1 1802 231 79 27 chr3 70356861 70357332 -147679826 - MLT1E2 LTR MaLR -123 503 1 278 286 60 38 chr3 70357383 70357516 -147679642 + L2 LINE L2 3178 3313 0 2278 113 0 0 chr3 70357608 70357909 -147679249 + AluSx SINE Alu 1 301 -11 25 0 0 0 chr3 70357909 70357934 -147679224 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr3 70358536 70358567 -147678591 + AT_rich Low_complexity Low_complexity 1 31 0 270 136 0 0 chr3 70359215 70359259 -147677899 + (A)n Simple_repeat Simple_repeat 1 44 0 734 202 87 17 chr3 70360390 70360563 -147676595 + MER5A DNA MER1_type 5 189 0 399 287 60 47 chr3 70360575 70360725 -147676433 - MIR SINE MIR -76 186 35 987 183 20 0 chr3 70361373 70361570 -147675588 + L1MD2 LINE L1 6156 6356 -3 536 289 61 28 chr3 70362445 70362625 -147674533 - MIR SINE MIR -71 191 6 302 271 140 9 chr3 70362936 70363043 -147674115 - MIR SINE MIR -50 212 92 259 257 40 30 chr3 70363084 70363185 -147673973 - MER20B DNA MER1_type -607 176 75 21 36 0 0 chr3 70363646 70363674 -147673484 + AT_rich Low_complexity Low_complexity 1 28 0 1331 204 99 6 chr3 70364219 70364532 -147672626 - MER2 DNA MER2_type -1 343 2 183 186 0 0 chr3 70365051 70365094 -147672064 + (TGGG)n Simple_repeat Simple_repeat 3 45 0 822 249 107 0 chr3 70366210 70366435 -147670723 - MIR SINE MIR -1 261 13 188 335 102 45 chr3 70366509 70366685 -147670473 + MIR SINE MIR 31 216 -46 * 197 232 316 32 chr3 70366680 70366775 -147670383 + L2 LINE L2 3192 3313 0 327 313 0 20 chr3 70366929 70367028 -147670130 - MIR SINE MIR -118 144 48 196 176 0 0 chr3 70367227 70367261 -147669897 - MER5B DNA MER1_type -2 176 143 * 327 263 88 0 chr3 70367251 70367331 -147669827 + MER5B DNA MER1_type 90 176 -2 216 263 38 25 chr3 70367401 70367481 -147669677 - MIR SINE MIR -141 121 41 1469 164 44 44 chr3 70368218 70368492 -147668666 - AluJo SINE Alu -27 285 12 371 301 112 34 chr3 70368908 70369114 -147668044 + L1ME4a LINE L1 5868 6089 -32 393 319 83 6 chr3 70369515 70369684 -147667474 + MIR SINE MIR 8 189 -73 275 266 53 43 chr3 70371114 70371208 -147665950 - MER5B DNA MER1_type 0 178 84 263 216 20 0 chr3 70371187 70371238 -147665920 + MER5B DNA MER1_type 127 178 0 * 601 260 40 12 chr3 70372195 70372368 -147664790 - MIR SINE MIR -65 197 20 308 303 83 14 chr3 70372752 70372897 -147664261 + MIR SINE MIR 7 161 -101 444 272 288 0 chr3 70373619 70373810 -147663348 + MIR SINE MIR 16 261 -1 312 327 78 87 chr3 70373953 70374243 -147662915 - L2 LINE L2 -17 3255 2969 1537 117 22 0 chr3 70374243 70374465 -147662693 - AluSg/x SINE Alu -12 298 72 312 327 78 87 chr3 70374465 70374620 -147662538 - L2 LINE L2 -303 2969 2814 235 247 22 56 chr3 70375184 70375273 -147661885 + MIR SINE MIR 68 153 -109 246 333 20 10 chr3 70376116 70376215 -147660943 - L3b LINE CR1 -131 1452 1353 1819 132 59 4 chr3 70376482 70376754 -147660404 + AluJb SINE Alu 1 287 -25 1007 246 15 0 chr3 70377254 70377453 -147659705 - MIR SINE MIR -51 211 10 284 283 86 73 chr3 70377608 70377841 -147659317 - MIR SINE MIR -14 248 13 717 259 98 33 chr3 70378494 70378541 -147658617 - MLT1J LTR MaLR -33 478 436 270 56 0 0 chr3 70378541 70378577 -147658581 + (TG)n Simple_repeat Simple_repeat 2 37 0 717 259 98 33 chr3 70378577 70378865 -147658293 - MLT1J LTR MaLR -75 436 121 481 209 75 15 chr3 70379887 70380021 -147657137 - LTR67 LTR ERVL -6 551 410 559 228 138 6 chr3 70380403 70380570 -147656588 + MIR SINE MIR 66 254 -8 1298 184 39 160 chr3 70380683 70380921 -147656237 - L1MC5 LINE L1 -421 7540 7275 1633 173 171 11 chr3 70380921 70381103 -147656055 + MSTA LTR MaLR 1 153 -275 261 0 0 0 chr3 70381103 70381132 -147656026 + (TC)n Simple_repeat Simple_repeat 1 29 0 1633 173 171 11 chr3 70381132 70381318 -147655840 + MSTA LTR MaLR 153 428 0 1298 184 39 160 chr3 70381318 70381708 -147655450 - L1MC5 LINE L1 -686 7275 7029 1968 137 16 13 chr3 70381708 70382015 -147655143 - AluSx SINE Alu -4 308 1 1298 184 39 160 chr3 70382015 70382190 -147654968 - L1MC5 LINE L1 -932 7029 6834 28217 27 2 0 chr3 70382330 70387380 -147649778 - L1PA2 LINE L1 -4 6151 1094 812 61 18 0 chr3 70387362 70387476 -147649682 - L1PA2 LINE L1 -6030 116 1 * 180 114 0 29 chr3 70387778 70387813 -147649345 + L2 LINE L2 3008 3041 -231 2213 115 6 3 chr3 70388391 70388703 -147648455 + AluSq SINE Alu 1 313 0 1742 149 18 0 chr3 70388727 70389002 -147648156 + AluJb SINE Alu 1 280 -32 198 0 0 0 chr3 70389008 70389030 -147648128 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1870 126 7 65 chr3 70389983 70390293 -147646865 - AluSx SINE Alu -20 292 1 22 0 0 0 chr3 70390638 70390660 -147646498 + AT_rich Low_complexity Low_complexity 1 22 0 374 279 59 38 chr3 70391314 70391551 -147645607 + L1ME4a LINE L1 4411 4652 -1494 337 302 118 73 chr3 70391565 70392262 -147644896 + L1ME4a LINE L1 4663 5390 -756 23 33 0 0 chr3 70392409 70392439 -147644719 + AT_rich Low_complexity Low_complexity 1 30 0 380 254 114 37 chr3 70392440 70392834 -147644324 + L1ME4a LINE L1 5650 6074 -47 462 308 56 54 chr3 70393135 70393580 -147643578 - MLT1L LTR MaLR -17 598 125 260 248 171 19 chr3 70395174 70395279 -147641879 + L2 LINE L2 2924 3044 -228 762 196 151 73 chr3 70395439 70395658 -147641500 + MER8 DNA MER2_type 4 239 0 210 341 24 24 chr3 70396695 70396777 -147640381 + L2 LINE L2 2692 2773 -541 2118 117 21 0 chr3 70397266 70397557 -147639601 - AluSc SINE Alu -12 297 1 193 319 0 29 chr3 70398109 70398178 -147638980 - L2 LINE L2 -4 3309 3243 810 274 72 0 chr3 70398261 70398498 -147638660 + MIR SINE MIR 6 259 -3 239 324 14 0 chr3 70399015 70399089 -147638069 + MER5C DNA MER1_type 1 75 -249 293 326 28 28 chr3 70399282 70399426 -147637732 - L2 LINE L2 -1023 2291 2148 1961 132 146 7 chr3 70399432 70399835 -147637323 - MLT1C LTR MaLR -8 459 1 216 0 0 0 chr3 70400434 70400458 -147636700 + (A)n Simple_repeat Simple_repeat 1 24 0 320 339 163 70 chr3 70401434 70401735 -147635423 - L2 LINE L2 -10 3262 2934 400 294 13 46 chr3 70401883 70402036 -147635122 - MIR SINE MIR -113 149 2 879 278 31 4 chr3 70402802 70403057 -147634101 - MIR SINE MIR 0 262 1 695 203 62 23 chr3 70403504 70403681 -147633477 - Charlie8 DNA MER1_type -2232 185 2 287 299 84 58 chr3 70403881 70404035 -147633123 - MIR3 SINE MIR -7 201 44 1057 184 78 0 chr3 70404042 70404260 -147632898 - MER46A DNA MER2_type -1 235 1 431 194 38 94 chr3 70404294 70404454 -147632704 + MLT1K LTR MaLR 432 582 -6 952 158 44 22 chr3 70406746 70406974 -147630184 + L1MC3 LINE L1 7553 7785 0 418 293 94 73 chr3 70409117 70409598 -147627560 + L1M2 LINE L1 595 1085 -5764 241 233 17 0 chr3 70409724 70409784 -147627374 + CT-rich Low_complexity Low_complexity 2 62 0 196 176 14 14 chr3 70409857 70409931 -147627227 + (CCG)n Simple_repeat Simple_repeat 2 75 0 180 262 16 33 chr3 70411912 70411973 -147625185 - L2 LINE L2 -10 3303 3244 348 287 155 0 chr3 70413699 70413828 -147623330 + MIR SINE MIR 17 165 -97 1182 226 44 73 chr3 70415965 70416113 -147621045 - MER39 LTR ERV1 -6 682 531 2012 131 7 10 chr3 70416113 70416445 -147620713 + AluSx SINE Alu 1 312 0 1182 226 44 73 chr3 70416445 70416835 -147620323 - MER39 LTR ERV1 -157 531 6 887 120 135 0 chr3 70416847 70416980 -147620178 + AluJb SINE Alu 145 295 -17 254 309 15 0 chr3 70417124 70417192 -147619966 + MIR SINE MIR 187 255 -7 550 267 61 11 chr3 70418622 70418802 -147618356 + MIR SINE MIR 33 221 -41 21 0 0 0 chr3 70420002 70420023 -147617135 + AT_rich Low_complexity Low_complexity 1 21 0 395 305 70 8 chr3 70420668 70420796 -147616362 - L2 LINE L2 -1 3271 3136 217 284 49 37 chr3 70421137 70421218 -147615940 + MIR SINE MIR 1 82 -180 205 214 0 18 chr3 70421366 70421422 -147615736 + (TAA)n Simple_repeat Simple_repeat 2 56 0 1175 197 87 46 chr3 70421476 70421941 -147615217 + MLT2B1 LTR ERVL 1 514 -1 768 177 16 0 chr3 70421995 70422119 -147615039 - FLAM_A SINE Alu -7 126 1 430 305 8 16 chr3 70422737 70422865 -147614293 - MER5A DNA MER1_type -3 186 60 645 354 96 6 chr3 70424148 70424648 -147612510 - MLT1K LTR MaLR -18 570 26 200 315 72 54 chr3 70425100 70425211 -147611947 + L2 LINE L2 3160 3272 0 675 295 95 5 chr3 70425214 70425414 -147611744 - MIR SINE MIR -5 257 40 235 200 80 0 chr3 70425524 70425535 -147611623 + MER3 DNA MER1_type 37 51 -158 331 159 58 0 chr3 70425535 70425604 -147611554 - MER3 DNA MER1_type 0 209 137 1930 121 43 20 chr3 70425608 70425721 -147611437 + AluSx SINE Alu 1 110 -202 2156 121 5 54 chr3 70425721 70426094 -147611064 - THE1A LTR MaLR 0 355 1 1930 121 43 20 chr3 70426094 70426285 -147610873 + AluSx SINE Alu 110 312 0 418 141 14 0 chr3 70426285 70426356 -147610802 - MER3 DNA MER1_type -72 137 66 1905 135 0 14 chr3 70426661 70426976 -147610182 - AluSq SINE Alu 0 311 1 258 324 29 9 chr3 70428458 70428563 -147608595 - MIR SINE MIR 0 262 156 795 167 7 0 chr3 70428564 70428702 -147608456 - MER44D DNA MER2_type -1 604 466 1046 200 67 9 chr3 70428702 70428912 -147608246 + AluJb SINE Alu 1 222 -90 23 0 0 0 chr3 70428936 70428959 -147608199 + AT_rich Low_complexity Low_complexity 1 23 0 2089 189 10 15 chr3 70428959 70429306 -147607852 - MER44D DNA MER2_type -2014 473 72 2207 152 72 40 chr3 70429306 70429679 -147607479 - LOR1b LTR ERV1 0 461 70 2053 135 13 3 chr3 70429679 70429982 -147607176 - AluSx SINE Alu -4 308 3 2207 152 72 40 chr3 70429982 70430055 -147607103 - LOR1b LTR ERV1 -391 70 1 2089 189 10 15 chr3 70430055 70430119 -147607039 - MER44D DNA MER2_type -2415 72 9 343 309 110 7 chr3 70430134 70430270 -147606888 - MIR SINE MIR -105 157 8 263 314 34 0 chr3 70430312 70430410 -147606748 - MIR SINE MIR -17 191 81 24 0 0 0 chr3 70430824 70430848 -147606310 + AT_rich Low_complexity Low_complexity 1 24 0 2610 186 4 30 chr3 70430935 70431434 -147605724 - MER66B LTR ERV1 0 486 1 322 272 46 59 chr3 70431845 70432084 -147605074 + L1MC4a LINE L1 5666 5901 -1907 240 240 0 0 chr3 70432767 70432871 -147604287 + CT-rich Low_complexity Low_complexity 1 104 0 1710 181 3 0 chr3 70433607 70433911 -147603247 - MER72 LTR ERV1 -2 720 416 1156 224 52 28 chr3 70433919 70434209 -147602949 + AluJo SINE Alu 9 305 -7 696 216 0 46 chr3 70434209 70434362 -147602796 - MER72 LTR ERV1 -298 424 279 905 241 10 0 chr3 70434480 70434675 -147602483 - MER72 LTR ERV1 -525 197 1 1229 161 27 76 chr3 70435085 70435415 -147601743 - L1MD3 LINE L1 -11 7984 7671 278 304 54 11 chr3 70436066 70436158 -147601000 + MIR SINE MIR 36 131 -77 1578 169 58 62 chr3 70436884 70437422 -147599736 + MLT2A2 LTR ERVL 3 554 0 3906 118 22 0 chr3 70437501 70438122 -147599036 + LTR24C LTR ERV1 1 635 0 543 221 67 40 chr3 70438440 70438693 -147598465 + MIR SINE MIR 2 261 -1 408 283 50 17 chr3 70439455 70439575 -147597583 - L2 LINE L2 0 3272 3149 550 283 44 62 chr3 70440146 70440403 -147596755 - MIR SINE MIR -5 257 1 215 263 92 53 chr3 70440528 70440680 -147596478 - L2 LINE L2 -204 3068 2911 1240 249 71 49 chr3 70440842 70441336 -147595822 + MLT1H LTR MaLR 41 545 -4 896 81 0 0 chr3 70441431 70441542 -147595616 - AluY SINE Alu -8 303 193 262 338 62 21 chr3 70441570 70441627 -147595531 - MIR SINE MIR -81 181 128 183 100 0 0 chr3 70441627 70441657 -147595501 + (CAA)n Simple_repeat Simple_repeat 1 30 0 262 338 62 21 chr3 70441657 70441744 -147595414 - MIR SINE MIR -134 128 31 261 379 89 16 chr3 70441765 70441955 -147595203 + L3 LINE CR1 398 601 -976 198 273 0 0 chr3 70442248 70442292 -147594866 + L2 LINE L2 3209 3252 -20 365 322 41 30 chr3 70442567 70442834 -147594324 + LTR16A1 LTR ERVL 147 416 -41 188 352 65 9 chr3 70442861 70442969 -147594189 + L2 LINE L2 3158 3271 -1 1280 133 28 76 chr3 70443123 70443372 -147593786 + AluJb SINE Alu 1 237 -75 192 125 0 0 chr3 70443377 70443409 -147593749 + (A)n Simple_repeat Simple_repeat 1 32 0 4561 61 0 8 chr3 70443409 70443995 -147593163 + L1PA6 LINE L1 5570 6150 -4 360 0 0 0 chr3 70443998 70444038 -147593120 + (GAAA)n Simple_repeat Simple_repeat 2 41 0 2307 107 6 0 chr3 70444133 70444471 -147592687 + L1PA13 LINE L1 5805 6144 -19 520 337 58 0 chr3 70444593 70444840 -147592318 - L2 LINE L2 -277 3036 2776 634 287 30 6 chr3 70444866 70445030 -147592128 + MIR SINE MIR 18 185 -77 200 238 12 83 chr3 70445616 70445700 -147591458 - L2 LINE L2 -3092 222 145 448 346 83 8 chr3 70445797 70446037 -147591121 - MIR SINE MIR -4 258 1 328 276 43 17 chr3 70446804 70446920 -147590238 - L2 LINE L2 -1 3312 3194 659 297 68 14 chr3 70446920 70447216 -147589942 + MLT1G1 LTR MaLR 1 312 -283 347 248 111 8 chr3 70447640 70447757 -147589401 - MIR SINE MIR -128 134 6 426 309 16 8 chr3 70448287 70448413 -147588745 + MIR SINE MIR 19 145 -63 320 198 12 37 chr3 70448439 70448472 -147588686 + MER117 DNA MER1_type 11 43 -154 2306 193 92 10 chr3 70448472 70448980 -147588178 - MER44D DNA MER2_type 0 605 1 320 198 12 37 chr3 70448980 70449027 -147588131 + MER117 DNA MER1_type 43 89 -108 235 337 54 0 chr3 70449230 70449322 -147587836 + L2 LINE L2 3099 3195 -77 385 338 13 19 chr3 70449356 70449513 -147587645 + MIR SINE MIR 107 262 0 193 100 0 40 chr3 70449965 70450001 -147587157 + (TTTG)n Simple_repeat Simple_repeat 2 37 -12 8560 57 3 13 chr3 70450001 70451918 -147585240 - L1PA6 LINE L1 -1 6153 4248 193 100 0 40 chr3 70451918 70451931 -147585227 + (TTTG)n Simple_repeat Simple_repeat 37 49 0 298 322 43 9 chr3 70452182 70452297 -147584861 + MIR SINE MIR 6 124 -138 315 274 66 62 chr3 70452983 70453242 -147583916 + MER112 DNA MER1_type 1 260 0 667 168 150 18 chr3 70453740 70453907 -147583251 + MER53 DNA DNA 1 189 0 257 0 30 0 chr3 70454223 70454256 -147582902 + (CA)n Simple_repeat Simple_repeat 2 35 0 243 0 0 0 chr3 70454255 70454282 -147582876 + (TC)n Simple_repeat Simple_repeat 1 27 0 * 263 264 73 88 chr3 70454670 70454830 -147582328 + MIR SINE MIR 2 156 -79 243 0 0 0 chr3 70454840 70454867 -147582291 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 735 218 56 0 chr3 70454938 70455117 -147582041 + MER5A DNA MER1_type 1 189 0 231 264 56 163 chr3 70455344 70455791 -147581367 - L2 LINE L2 -2 3270 2872 658 149 24 192 chr3 70455961 70456108 -147581050 + MER20 DNA MER1_type 8 178 -41 1567 172 71 4 chr3 70456108 70456375 -147580783 + AluJo SINE Alu 1 285 -27 658 149 24 192 chr3 70456375 70456440 -147580718 + MER20 DNA MER1_type 178 174 -45 1834 142 61 28 chr3 70456440 70456800 -147580358 + THE1C LTR MaLR 1 372 -3 658 149 24 192 chr3 70456800 70456841 -147580317 + MER20 DNA MER1_type 173 219 0 189 74 0 0 chr3 70457019 70457046 -147580112 + (CA)n Simple_repeat Simple_repeat 2 28 0 2067 139 12 16 chr3 70457127 70457506 -147579652 + MLT2A2 LTR ERVL 1 309 -144 1067 147 6 0 chr3 70457601 70457778 -147579380 + MLT2A2 LTR ERVL 276 453 0 614 98 24 24 chr3 70458544 70458667 -147578491 + (TTCC)n Simple_repeat Simple_repeat 3 125 0 251 240 41 91 chr3 70459189 70459310 -147577848 + MIR SINE MIR 57 171 -91 193 338 0 15 chr3 70459365 70459433 -147577725 + MIR SINE MIR 196 262 0 1577 191 0 8 chr3 70460857 70461201 -147575957 + AluJb SINE Alu 48 389 0 549 301 56 19 chr3 70462703 70462919 -147574239 + MIR SINE MIR 9 232 -30 195 229 0 0 chr3 70463708 70463769 -147573389 + (TGGA)n Simple_repeat Simple_repeat 1 61 0 468 0 0 0 chr3 70464143 70464195 -147572963 + (TA)n Simple_repeat Simple_repeat 2 53 0 2668 42 0 0 chr3 70464195 70464505 -147572653 - AluY SINE Alu -1 310 1 243 200 93 0 chr3 70464513 70464588 -147572570 + LTR67 LTR ERVL 476 557 0 635 290 65 5 chr3 70464590 70464807 -147572351 - MIR SINE MIR -16 246 17 513 267 94 23 chr3 70464914 70465242 -147571916 + MLT1J2 LTR MaLR 38 421 -29 759 168 0 24 chr3 70465347 70465472 -147571686 - FLAM_C SINE Alu -7 126 5 494 221 36 24 chr3 70466879 70467037 -147570121 - MLT1J2 LTR MaLR -244 165 9 347 285 32 49 chr3 70467043 70467125 -147570033 - MIR3 SINE MIR -1 207 126 2377 142 46 28 chr3 70467125 70467562 -147569596 + MER65A LTR ERV1 1 445 0 347 285 32 49 chr3 70467562 70467602 -147569556 - MIR3 SINE MIR -82 126 87 626 196 31 43 chr3 70467608 70467771 -147569387 - MLT1K LTR MaLR -70 518 358 1963 123 3 11 chr3 70469124 70469434 -147567724 + AluSg SINE Alu 1 308 0 2118 118 3 13 chr3 70469789 70470103 -147567055 + AluSx SINE Alu 1 311 -1 227 311 19 29 chr3 70470195 70470298 -147566860 + MIR SINE MIR 94 195 -67 513 264 132 0 chr3 70470319 70470493 -147566665 + LTR33 LTR ERVL 23 219 -302 335 256 57 68 chr3 70470850 70471026 -147566132 - MIR SINE MIR -13 249 76 232 300 31 8 chr3 70471336 70471466 -147565692 + L1ME LINE L1 5654 5786 -335 4259 151 4 6 chr3 70471621 70472341 -147564817 - MER50 LTR ERV1 -15 719 1 22 35 0 0 chr3 70472527 70472556 -147564602 + AT_rich Low_complexity Low_complexity 1 29 0 297 299 38 43 chr3 70472565 70472749 -147564409 + L3 LINE CR1 1151 1333 -244 * 649 324 62 53 chr3 70472729 70472898 -147564260 - L2 LINE L2 -458 2856 2690 743 168 157 144 chr3 70472898 70473267 -147563891 - MLT1A2 LTR MaLR 0 374 1 649 324 62 53 chr3 70473267 70473551 -147563607 - L2 LINE L2 -624 2690 2399 1620 233 52 9 chr3 70473759 70474206 -147562952 - MLT1C LTR MaLR 0 467 2 442 299 67 10 chr3 70474218 70474516 -147562642 - L1M4 LINE L1 -1318 4828 4514 3786 169 23 16 chr3 70474517 70475223 -147561935 + MER50 LTR ERV1 1 711 -23 436 298 92 5 chr3 70475421 70475639 -147561519 - L1M4 LINE L1 -1944 4202 3966 406 276 101 55 chr3 70476871 70477088 -147560070 - MIR SINE MIR -2 260 34 1540 239 31 5 chr3 70477107 70477522 -147559636 - MER63B DNA MER1_type -10 426 1 296 294 176 0 chr3 70478239 70478324 -147558834 + MIR3 SINE MIR 55 154 -54 191 350 119 35 chr3 70478333 70478476 -147558682 + MER5A DNA MER1_type 7 161 -28 299 321 60 30 chr3 70479349 70479517 -147557641 + MLT1K LTR MaLR 184 356 -232 710 189 0 15 chr3 70479977 70480109 -147557049 - FLAM_C SINE Alu -3 130 1 651 298 46 23 chr3 70480991 70481209 -147555949 - MIR SINE MIR -27 235 13 263 380 0 20 chr3 70481289 70481389 -147555769 - L2 LINE L2 -176 3096 2999 429 284 27 27 chr3 70481652 70481800 -147555358 + MLT1H LTR MaLR 21 168 -381 359 277 29 15 chr3 70483234 70483371 -147553787 - L1MC5 LINE L1 -36 7925 7787 296 273 93 31 chr3 70484682 70484843 -147552315 - HsTC2 DNA Tc2 -9 1889 1 971 133 100 0 chr3 70484868 70485018 -147552140 - FRAM SINE Alu -7 169 5 275 194 151 0 chr3 70485114 70485207 -147551951 - L1MC/D LINE L1 -2025 5783 5677 2178 127 33 25 chr3 70485286 70485647 -147551511 + THE1B LTR MaLR 1 364 0 11439 96 10 4 chr3 70485648 70487218 -147549940 + THE1B-int LTR MaLR 2 1580 0 2328 115 30 30 chr3 70487218 70487582 -147549576 + THE1B LTR MaLR 1 364 0 1881 139 0 7 chr3 70487627 70487907 -147549251 - AluSq SINE Alu -7 306 29 277 325 56 8 chr3 70487923 70488049 -147549109 - MIR SINE MIR -115 147 16 345 262 74 10 chr3 70488672 70488798 -147548360 - MER5A DNA MER1_type -52 126 9 1028 216 9 14 chr3 70488814 70489032 -147548126 + MER58A DNA MER1_type 1 217 -7 2005 138 7 20 chr3 70489122 70489427 -147547731 + AluSx SINE Alu 1 301 -11 326 297 99 0 chr3 70489428 70489519 -147547639 - L2 LINE L2 -19 3294 3195 238 223 68 0 chr3 70489538 70489612 -147547546 + MIR SINE MIR 93 172 -90 1508 141 122 74 chr3 70489613 70489990 -147547168 - MER57A LTR ERV1 0 403 9 304 265 82 0 chr3 70490647 70490745 -147546413 - LTR16C LTR ERVL 0 491 386 474 253 100 64 chr3 70490901 70491182 -147545976 - LTR16C LTR ERVL -4 487 197 1008 262 46 69 chr3 70491785 70492027 -147545131 - LTR16A LTR ERVL -8 442 210 1547 191 3 14 chr3 70492027 70492339 -147544819 - AluJb SINE Alu 0 314 6 1008 262 46 69 chr3 70492339 70492488 -147544670 - LTR16A LTR ERVL -240 210 59 309 51 0 0 chr3 70493095 70493134 -147544024 + (TG)n Simple_repeat Simple_repeat 2 40 0 1910 278 42 53 chr3 70493305 70494076 -147543082 - L1M4 LINE L1 -1042 5104 4343 1507 203 48 23 chr3 70494076 70494437 -147542721 - MLT1A2 LTR MaLR -5 462 1 2934 233 36 45 chr3 70494437 70495083 -147542075 - L1M4 LINE L1 -1803 4343 3708 624 179 0 8 chr3 70495083 70495206 -147541952 + L1PA16 LINE L1 6036 6157 -9 2934 233 36 45 chr3 70495206 70495660 -147541498 - L1M4 LINE L1 -2438 3708 3252 1270 139 158 55 chr3 70496166 70496476 -147540682 - MER2 DNA MER2_type -2 342 1 455 205 60 17 chr3 70496596 70496713 -147540445 - L2 LINE L2 0 3313 3192 21 0 0 0 chr3 70497788 70497809 -147539349 + AT_rich Low_complexity Low_complexity 1 21 0 316 308 49 49 chr3 70498201 70498317 -147538841 + L2 LINE L2 3129 3247 -25 2237 143 6 8 chr3 70498317 70498681 -147538477 + MER47A DNA MER2_type 4 366 0 316 308 49 49 chr3 70498681 70498707 -147538451 + L2 LINE L2 3246 3271 -1 194 333 39 10 chr3 70498701 70498803 -147538355 - MIR SINE MIR 0 262 158 * 678 189 101 7 chr3 70499199 70499347 -147537811 - FRAM SINE Alu 0 166 5 416 215 44 75 chr3 70499368 70499506 -147537652 + MIR SINE MIR 31 164 -63 501 300 131 11 chr3 70499938 70500198 -147536960 - LTR16C LTR ERVL -12 479 189 639 274 126 31 chr3 70500829 70501194 -147535964 - L2 LINE L2 0 3313 2880 511 288 57 1 chr3 70501227 70501421 -147535737 + MIR SINE MIR 50 252 -10 627 109 0 0 chr3 70501752 70501844 -147535314 - MSTA LTR MaLR 0 428 337 * 1042 132 132 24 chr3 70501840 70502045 -147535113 - MSTA LTR MaLR -201 227 1 273 342 50 0 chr3 70502068 70502188 -147534970 - MLT1K LTR MaLR -342 246 121 193 278 93 56 chr3 70502319 70502427 -147534731 + MIR SINE MIR 23 134 -74 249 246 191 18 chr3 70502431 70502541 -147534617 - L2 LINE L2 0 3313 3185 345 347 105 34 chr3 70503662 70504100 -147533058 + MLT1K LTR MaLR 86 554 -34 271 309 122 29 chr3 70504132 70504271 -147532887 + L2 LINE L2 2701 2852 -462 312 294 119 8 chr3 70504432 70504558 -147532600 + MIR SINE MIR 117 256 -6 495 229 0 8 chr3 70505142 70505264 -147531894 + MER3 DNA MER1_type 48 168 -41 1300 197 111 0 chr3 70505270 70505620 -147531538 + MER3 DNA MER1_type 2236 2624 0 264 346 93 39 chr3 70505620 70505825 -147531333 + MIR SINE MIR 31 246 -16 1901 102 88 18 chr3 70506076 70506361 -147530797 - AluSg SINE Alu -5 305 1 199 350 33 17 chr3 70506408 70506528 -147530630 + MIR3 SINE MIR 60 181 -27 390 299 147 10 chr3 70506914 70507118 -147530040 - MIR SINE MIR -25 237 6 188 289 79 40 chr3 70507122 70507198 -147529960 - L2 LINE L2 -30 3283 3205 207 100 0 0 chr3 70507522 70507552 -147529606 + (TG)n Simple_repeat Simple_repeat 1 30 0 249 306 124 43 chr3 70507700 70507886 -147529272 + L2 LINE L2 3020 3220 -93 931 223 24 0 chr3 70508424 70508671 -147528487 + L1ME3A LINE L1 5879 6131 -39 477 0 0 0 chr3 70508801 70508854 -147528304 + (TG)n Simple_repeat Simple_repeat 2 54 0 300 300 138 0 chr3 70509551 70509681 -147527477 - MIR SINE MIR -88 174 27 235 255 0 98 chr3 70510105 70510207 -147526951 - L2 LINE L2 -3 3310 3219 575 185 48 14 chr3 70510679 70510825 -147526333 + L1ME2 LINE L1 5782 5932 -232 210 71 0 0 chr3 70510923 70510951 -147526207 + (T)n Simple_repeat Simple_repeat 1 28 0 464 271 96 21 chr3 70510956 70511288 -147525870 + L1MC/D LINE L1 5373 5729 -2079 24 0 0 0 chr3 70511784 70511808 -147525350 + AT_rich Low_complexity Low_complexity 1 24 0 406 275 36 57 chr3 70512048 70512241 -147524917 + L2 LINE L2 3119 3307 -6 486 258 7 60 chr3 70512606 70512757 -147524401 - MER5B DNA MER1_type -35 143 1 416 266 109 0 chr3 70512791 70512947 -147524211 + MIR SINE MIR 39 210 -52 785 296 13 30 chr3 70513250 70513480 -147523678 - MIR SINE MIR 0 262 37 195 204 0 0 chr3 70513505 70513554 -147523604 + C-rich Low_complexity Low_complexity 4 52 0 1571 156 4 11 chr3 70513560 70513829 -147523329 - AluJb SINE Alu -34 278 12 470 301 94 5 chr3 70514466 70514679 -147522479 + MIR SINE MIR 21 252 -10 241 301 68 0 chr3 70515951 70516024 -147521134 + L2 LINE L2 2976 3053 -219 1850 213 28 20 chr3 70516440 70516983 -147520175 - MER74A LTR ERVL 0 622 23 1354 167 99 8 chr3 70517245 70517508 -147519650 + AluJo SINE Alu 1 287 -25 222 91 0 0 chr3 70517508 70517541 -147519617 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 591 275 100 54 chr3 70518536 70518907 -147518251 + MLT1H LTR MaLR 138 525 -24 549 240 20 60 chr3 70519320 70519520 -147517638 - MIR SINE MIR -6 256 65 264 77 0 0 chr3 70519520 70519559 -147517599 + (CA)n Simple_repeat Simple_repeat 1 39 0 1116 267 122 28 chr3 70520177 70520971 -147516187 + L2 LINE L2 2443 3313 0 648 318 124 0 chr3 70520995 70521228 -147515930 + MIR SINE MIR 1 262 0 499 237 104 0 chr3 70521336 70521471 -147515687 - MIR SINE MIR -66 196 48 186 308 0 0 chr3 70522266 70522305 -147514853 + L2 LINE L2 3267 3305 -8 865 307 74 20 chr3 70522985 70523444 -147513714 + LTR33 LTR ERVL 3 486 -35 419 292 46 36 chr3 70523564 70523759 -147513399 + L2 LINE L2 3046 3242 -71 1272 223 7 0 chr3 70526016 70526321 -147510837 + L1ME2 LINE L1 5668 5974 -190 1133 252 23 23 chr3 70526552 70526941 -147510217 - L1MDa LINE L1 -6148 392 4 253 111 0 0 chr3 70526976 70527012 -147510146 + L2 LINE L2 3227 3262 -10 980 247 5 0 chr3 70528107 70528330 -147508828 + MER58A DNA MER1_type 1 224 0 1843 255 99 28 chr3 70528332 70528447 -147508711 + L2 LINE L2 2066 2171 -1143 630 257 11 22 chr3 70528447 70528626 -147508532 - MER5B DNA MER1_type 0 178 2 1843 255 99 28 chr3 70528626 70529126 -147508032 + L2 LINE L2 2171 2725 -589 367 279 151 17 chr3 70529128 70529300 -147507858 + L2 LINE L2 3024 3218 -95 343 242 78 55 chr3 70529279 70529407 -147507751 - MER91C DNA MER1_type -9 131 1 * 247 338 12 0 chr3 70529421 70529501 -147507657 + L2 LINE L2 3224 3304 -9 32 0 0 0 chr3 70530004 70530036 -147507122 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr3 70530112 70530133 -147507025 + AT_rich Low_complexity Low_complexity 1 21 0 214 28 28 28 chr3 70530200 70530236 -147506922 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 210 273 0 0 chr3 70530271 70530326 -147506832 + T-rich Low_complexity Low_complexity 1 55 0 435 264 40 103 chr3 70532029 70532302 -147504856 - Charlie8 DNA MER1_type -990 1427 74 192 281 66 15 chr3 70532409 70532483 -147504675 + MIR SINE MIR 32 111 -97 470 274 27 20 chr3 70532533 70532679 -147504479 - MIR3 SINE MIR -32 176 30 260 263 42 21 chr3 70534325 70534420 -147502738 - MIR SINE MIR -3 259 163 322 344 20 20 chr3 70534745 70534896 -147502262 - L3 LINE CR1 -604 973 823 11553 134 39 6 chr3 70535424 70537775 -147499383 - Tigger1 DNA MER2_type 0 2418 1 264 105 0 0 chr3 70537818 70537856 -147499302 + LTR67 LTR ERVL 509 546 -11 317 320 101 52 chr3 70537858 70538245 -147498913 + L2 LINE L2 2540 2945 -369 388 169 0 0 chr3 70538290 70538361 -147498797 - MER53 DNA DNA -112 77 7 225 196 0 0 chr3 70539218 70539274 -147497884 + GA-rich Low_complexity Low_complexity 2 57 0 906 310 49 47 chr3 70539274 70539767 -147497391 - MLT1K LTR MaLR -58 530 37 208 214 0 0 chr3 70540311 70540353 -147496805 - MIR SINE MIR -76 186 145 1244 119 0 0 chr3 70540365 70540533 -147496625 - AluSg/x SINE Alu 0 310 143 286 279 234 60 chr3 70540805 70541006 -147496152 + MIR SINE MIR 9 244 -18 457 263 38 15 chr3 70541313 70541446 -147495712 + MIR SINE MIR 49 184 -78 204 200 94 106 chr3 70541808 70541893 -147495265 - MIR SINE MIR -93 169 86 403 303 8 15 chr3 70541944 70542076 -147495082 + CT-rich Low_complexity Low_complexity 3 133 0 200 316 53 44 chr3 70542077 70542191 -147494967 - L2 LINE L2 -5 3267 3153 23247 135 42 17 chr3 70543379 70549576 -147487582 - L1PA8A LINE L1 -6 6440 19 11888 27 1 29 chr3 70549844 70552102 -147485056 - L1PA4 LINE L1 0 6155 3935 1595 86 36 0 chr3 70552621 70552843 -147484315 + MER30 DNA MER1_type 1 230 0 898 236 87 4 chr3 70553489 70553730 -147483428 + AluJo SINE Alu 52 312 0 584 193 24 19 chr3 70553730 70553985 -147483173 + GA-rich Low_complexity Low_complexity 1 256 0 1962 109 0 7 chr3 70554457 70554731 -147482427 - AluY SINE Alu -2 309 38 706 129 0 40 chr3 70556619 70556743 -147480415 - FRAM SINE Alu -9 167 49 1721 173 3 31 chr3 70556871 70557189 -147479969 + AluJo SINE Alu 1 309 -3 28 29 0 0 chr3 70557207 70557242 -147479916 + AT_rich Low_complexity Low_complexity 1 35 0 202 267 0 120 chr3 70557625 70557700 -147479458 + L2 LINE L2 3248 3313 0 615 253 11 44 chr3 70558129 70558311 -147478847 - FRAM SINE Alu 0 176 1 1710 154 75 28 chr3 70558501 70558859 -147478299 - THE1C LTR MaLR 0 375 1 3029 165 13 28 chr3 70558859 70559465 -147477693 - THE1C-int LTR MaLR 0 1580 984 6022 211 28 7 chr3 70559572 70560901 -147476257 - MST-int LTR MaLR -294 1357 1 2066 116 0 0 chr3 70560938 70561215 -147475943 + AluSq SINE Alu 1 277 -36 4285 202 16 8 chr3 70561215 70562230 -147474928 - L1 LINE L1 -1480 4666 3644 774 167 83 13 chr3 70562245 70562401 -147474757 - THE1C LTR MaLR -208 167 1 194 384 12 12 chr3 70562487 70562573 -147474585 - MIR3 SINE MIR -109 99 14 1472 187 90 57 chr3 70562574 70562962 -147474196 + MLT1C LTR MaLR 1 406 -61 2551 104 0 0 chr3 70562962 70563319 -147473839 - L1PA14 LINE L1 -1 6160 5804 1472 187 90 57 chr3 70563319 70563352 -147473806 + MLT1C LTR MaLR 406 436 -31 714 207 0 21 chr3 70563522 70563667 -147473491 + AluJo SINE Alu 1 142 -170 1238 290 95 44 chr3 70564600 70565031 -147472127 - L2 LINE L2 0 3313 2905 1995 150 0 29 chr3 70565031 70565345 -147471813 + AluJb SINE Alu 1 305 -7 1238 290 95 44 chr3 70565345 70565770 -147471388 - L2 LINE L2 -408 2905 2398 502 265 90 43 chr3 70565843 70566054 -147471104 + MIR SINE MIR 35 255 -7 421 192 0 0 chr3 70566061 70566134 -147471024 + Tigger3(Golem) DNA MER2_type 2 74 -2955 * 2438 158 36 2 chr3 70566130 70566568 -147470590 + Tigger3(Golem) DNA MER2_type 2577 3029 0 2242 114 7 0 chr3 70569168 70569466 -147467692 - AluSp SINE Alu -13 300 1 303 270 0 90 chr3 70569934 70570012 -147467146 + MIR SINE MIR 40 107 -155 1744 137 66 49 chr3 70570012 70570377 -147466781 + THE1C LTR MaLR 1 371 -4 303 270 0 90 chr3 70570377 70570409 -147466749 + MIR SINE MIR 107 140 -122 291 54 0 0 chr3 70570409 70570446 -147466712 + (A)n Simple_repeat Simple_repeat 1 37 0 804 258 57 0 chr3 70570603 70570812 -147466346 - MIR SINE MIR 0 262 42 425 274 95 34 chr3 70570829 70571008 -147466150 + MIR SINE MIR 3 192 -70 5343 124 11 12 chr3 70571236 70572199 -147464959 - L1PB4 LINE L1 0 6156 5193 230 338 150 23 chr3 70572410 70572676 -147464482 + L2 LINE L2 2678 2977 -337 222 118 0 0 chr3 70573337 70573371 -147463787 + (T)n Simple_repeat Simple_repeat 1 34 0 886 287 20 8 chr3 70573486 70573740 -147463418 + MIR SINE MIR 5 261 -1 365 343 54 18 chr3 70574194 70574360 -147462798 + MER5B DNA MER1_type 6 177 -1 299 262 56 16 chr3 70574373 70574499 -147462659 + MER117 DNA MER1_type 7 137 -60 200 235 44 59 chr3 70574558 70574626 -147462532 - MIR3 SINE MIR -48 160 94 243 287 35 0 chr3 70574628 70574715 -147462443 - MLT1H LTR MaLR -4 545 456 290 258 167 54 chr3 70574855 70575095 -147462063 - MLT1H LTR MaLR -264 285 19 238 310 28 14 chr3 70575107 70575178 -147461980 - MIR SINE MIR -107 101 30 274 315 174 38 chr3 70575850 70576063 -147461095 - MIR SINE MIR -1 261 20 1917 255 77 58 chr3 70577788 70577986 -147459172 + L2 LINE L2 2085 2278 -1035 2777 94 3 0 chr3 70577986 70578349 -147458809 - THE1B LTR MaLR 0 364 1 1917 255 77 58 chr3 70578349 70579262 -147457896 + L2 LINE L2 2278 3309 -4 22 56 0 0 chr3 70579262 70579298 -147457860 + AT_rich Low_complexity Low_complexity 1 36 0 308 337 0 0 chr3 70579653 70579745 -147457413 - MIR SINE MIR -70 138 47 293 288 25 12 chr3 70579821 70579901 -147457257 + MIR SINE MIR 70 150 -58 2661 174 26 16 chr3 70580591 70581096 -147456062 + LTR53 LTR ERVL 7 516 -3 1650 182 10 13 chr3 70581585 70581898 -147455260 + AluJb SINE Alu 1 312 0 1360 252 60 67 chr3 70582013 70582549 -147454609 - MLT1F1 LTR MaLR 0 567 11 438 288 34 20 chr3 70582600 70582943 -147454215 + LTR16C LTR ERVL 88 478 -13 222 291 64 36 chr3 70583038 70583148 -147454010 - L2 LINE L2 -1 3312 3200 334 326 23 23 chr3 70583685 70583814 -147453344 + MIR SINE MIR 20 148 -114 952 124 14 0 chr3 70583824 70583969 -147453189 + MER46A DNA MER2_type 90 236 0 282 342 71 26 chr3 70584350 70584505 -147452653 + MLT1K LTR MaLR 18 179 -409 22 0 0 0 chr3 70584728 70584750 -147452408 + AT_rich Low_complexity Low_complexity 1 22 0 841 256 43 31 chr3 70584825 70585079 -147452079 - MIR SINE MIR -1 261 5 410 279 153 5 chr3 70586002 70586192 -147450966 + MIR SINE MIR 31 248 -14 448 217 95 8 chr3 70586220 70586351 -147450807 + MIR SINE MIR 44 185 -63 193 328 30 0 chr3 70586426 70586493 -147450665 + MIR SINE MIR 194 262 0 550 305 125 30 chr3 70587064 70587425 -147449733 - L2 LINE L2 -676 2638 2244 1787 144 0 7 chr3 70587484 70587761 -147449397 + AluSx SINE Alu 1 275 -37 26 50 0 0 chr3 70587761 70587801 -147449357 + AT_rich Low_complexity Low_complexity 1 40 0 235 304 88 20 chr3 70588039 70588141 -147449017 - MIR SINE MIR -132 130 22 392 286 62 115 chr3 70588620 70589088 -147448070 - MLT1K LTR MaLR -70 518 76 459 248 85 39 chr3 70589667 70589820 -147447338 + Charlie8 DNA MER1_type 37 196 -2221 858 191 12 6 chr3 70590151 70590313 -147446845 + AluJb SINE Alu 148 310 -2 464 259 199 25 chr3 70590354 70590590 -147446568 - MLT1L LTR MaLR -338 277 1 182 210 48 48 chr3 70590776 70590838 -147446320 + MIR SINE MIR 37 98 -110 180 250 23 0 chr3 70591487 70591531 -147445627 + L2 LINE L2 3262 3306 -7 389 364 143 10 chr3 70591610 70591819 -147445339 + MIR SINE MIR 8 244 -18 301 234 45 36 chr3 70591886 70592027 -147445131 - MLT1F LTR MaLR -17 525 428 559 258 147 36 chr3 70593706 70593931 -147443227 - MIR SINE MIR 0 262 13 312 91 0 0 chr3 70595577 70595621 -147441537 + (CA)n Simple_repeat Simple_repeat 2 45 0 968 281 133 9 chr3 70596461 70596888 -147440270 - LTR16C LTR ERVL -8 483 4 415 271 94 50 chr3 70597098 70597279 -147439879 + MER5A DNA MER1_type 1 189 0 1441 156 35 0 chr3 70597408 70597690 -147439468 - L1MA4 LINE L1 -6 6294 6003 242 257 14 54 chr3 70597690 70597764 -147439394 + L2 LINE L2 3243 3313 0 738 262 155 56 chr3 70598088 70598481 -147438677 + MLT1K LTR MaLR 155 586 -2 235 333 0 21 chr3 70598550 70598643 -147438515 + MIR SINE MIR 49 139 -123 999 301 88 40 chr3 70599006 70599574 -147437584 + MLT1G LTR MaLR 1 590 0 442 288 95 29 chr3 70599909 70600152 -147437006 + MIR SINE MIR 3 261 -1 555 285 132 9 chr3 70600268 70600496 -147436662 - MIR SINE MIR -6 256 1 617 226 124 5 chr3 70601016 70601178 -147435980 + MER5A DNA MER1_type 6 189 0 331 297 330 8 chr3 70601184 70601538 -147435620 - L2 LINE L2 -13 3300 2833 * 371 319 71 52 chr3 70601535 70601747 -147435411 - L2 LINE L2 -2 3311 3105 1177 202 0 22 chr3 70601747 70601975 -147435183 + MER58A DNA MER1_type 2 224 0 371 319 71 52 chr3 70601975 70602188 -147434970 - L2 LINE L2 -208 3105 2690 363 217 0 0 chr3 70602547 70602616 -147434542 - L2 LINE L2 0 3313 3245 21 0 0 0 chr3 70602749 70602770 -147434388 + AT_rich Low_complexity Low_complexity 1 21 0 413 319 128 5 chr3 70602901 70603089 -147434069 - MIR SINE MIR -21 241 31 198 0 0 0 chr3 70603145 70603167 -147433991 + (A)n Simple_repeat Simple_repeat 1 22 0 298 329 86 33 chr3 70603525 70603677 -147433481 - MIR SINE MIR -5 257 98 849 207 61 0 chr3 70604341 70604505 -147432653 + MER5A DNA MER1_type 1 174 -15 313 308 31 15 chr3 70604556 70604686 -147432472 + L2 LINE L2 3182 3313 0 245 338 7 55 chr3 70604981 70605126 -147432032 + L3b LINE CR1 1257 1394 -189 437 220 22 0 chr3 70605176 70605267 -147431891 - L2 LINE L2 0 3272 3180 202 265 73 15 chr3 70605355 70605423 -147431735 - L2 LINE L2 -211 3061 2990 215 318 45 11 chr3 70606349 70606437 -147430721 + L2 LINE L2 3193 3283 -30 219 186 0 0 chr3 70606491 70606534 -147430624 + GA-rich Low_complexity Low_complexity 2 44 0 332 167 0 0 chr3 70606554 70606602 -147430556 + MER5B DNA MER1_type 1 48 -130 2449 260 41 19 chr3 70606679 70608320 -147428838 - L1ME3A LINE L1 -113 6057 4379 279 0 0 0 chr3 70609357 70609388 -147427770 + (TG)n Simple_repeat Simple_repeat 2 32 0 222 128 0 64 chr3 70609898 70609945 -147427213 - L2 LINE L2 -4 3309 3266 838 232 17 46 chr3 70610198 70610435 -147426723 + MIR SINE MIR 14 243 -19 580 233 37 25 chr3 70610489 70610652 -147426506 - MER97a DNA MER1_type? -715 179 15 642 248 7 7 chr3 70610772 70610921 -147426237 - MIR SINE MIR -3 259 111 1025 184 11 5 chr3 70610921 70611106 -147426052 - MER20 DNA MER1_type 0 219 34 208 352 14 0 chr3 70611167 70611238 -147425920 - MIR SINE MIR -150 112 41 636 244 158 6 chr3 70611271 70611435 -147425723 + MER5A DNA MER1_type 1 189 0 615 202 10 133 chr3 70611443 70611646 -147425512 + MER5B DNA MER1_type 1 178 0 295 283 61 10 chr3 70611705 70611804 -147425354 + MIR3 SINE MIR 89 192 -16 237 314 29 0 chr3 70611855 70611925 -147425233 + MIR SINE MIR 85 156 -106 222 322 100 0 chr3 70612627 70612717 -147424441 - MER5A DNA MER1_type 0 189 91 303 282 0 13 chr3 70612837 70612915 -147424243 + MIR SINE MIR 81 157 -105 208 259 17 17 chr3 70613003 70613061 -147424097 + L2 LINE L2 3215 3272 0 2397 190 45 24 chr3 70613551 70614089 -147423069 + L1MD2 LINE L1 5794 6342 -17 232 246 31 0 chr3 70614090 70614155 -147423003 + (TA)n Simple_repeat Simple_repeat 2 68 0 486 300 45 4 chr3 70614325 70614568 -147422590 + L1ME3A LINE L1 5685 5937 -233 389 187 388 22 chr3 70615189 70615323 -147421835 - MIR SINE MIR -44 218 36 7107 120 13 5 chr3 70615505 70617414 -147419744 - L1MA2 LINE L1 0 6304 4377 187 358 12 12 chr3 70617677 70617758 -147419400 + MER5A DNA MER1_type 3 83 -106 515 253 50 45 chr3 70618036 70618234 -147418924 - L2 LINE L2 0 3313 3115 207 108 27 0 chr3 70618344 70618381 -147418777 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 1714 136 6 65 chr3 70618863 70619186 -147417972 - AluJo SINE Alu -1 311 8 193 317 114 54 chr3 70619335 70619502 -147417656 + MIR SINE MIR 12 188 -74 186 338 153 28 chr3 70620354 70620570 -147416588 - L3 LINE CR1 -12 1565 1323 309 294 73 7 chr3 70620585 70620721 -147416437 + MIR SINE MIR 73 217 -45 432 279 25 35 chr3 70621408 70621609 -147415549 - L1ME LINE L1 -363 5758 5560 186 318 0 45 chr3 70622143 70622209 -147414949 + L2 LINE L2 3234 3296 -17 234 62 0 0 chr3 70622818 70622850 -147414308 + (A)n Simple_repeat Simple_repeat 1 32 0 709 280 59 8 chr3 70624414 70624650 -147412508 - MIR SINE MIR -14 248 1 408 322 129 43 chr3 70625325 70625698 -147411460 - MLT1K LTR MaLR -24 564 160 311 256 44 11 chr3 70626347 70626437 -147410721 + L2 LINE L2 3189 3281 -32 5340 102 9 12 chr3 70627781 70628585 -147408573 - L1PA13 LINE L1 -4 6159 5359 545 314 71 21 chr3 70628902 70629141 -147408017 - MIR SINE MIR 0 262 12 5309 128 16 6 chr3 70631130 70632226 -147404932 - L1PB2 LINE L1 -117 6034 4929 30 69 0 0 chr3 70632268 70632326 -147404832 + AT_rich Low_complexity Low_complexity 1 58 0 290 354 50 88 chr3 70632360 70632781 -147404377 - MLT1K LTR MaLR -123 465 61 261 361 56 42 chr3 70633294 70633438 -147403720 + MIR3 SINE MIR 11 156 -52 467 265 95 55 chr3 70633447 70633772 -147403386 - L1MCc LINE L1 -4890 1533 1196 408 339 36 51 chr3 70634207 70634540 -147402618 - L1MCc LINE L1 -5969 454 127 247 312 218 10 chr3 70635707 70635909 -147401249 + MIR SINE MIR 18 261 -1 265 256 56 11 chr3 70636573 70636663 -147400495 + MIR SINE MIR 113 206 -56 271 339 8 51 chr3 70637459 70637577 -147399581 - MIR3 SINE MIR -41 167 55 284 305 113 57 chr3 70638450 70638591 -147398567 + MIR3 SINE MIR 20 168 -40 351 329 36 7 chr3 70640452 70640589 -147396569 - MIR SINE MIR -40 222 82 1902 146 0 39 chr3 70640594 70640902 -147396256 - AluJo SINE Alu -16 296 1 726 279 6 6 chr3 70640953 70641125 -147396033 - MER5A DNA MER1_type 0 189 18 705 226 89 65 chr3 70641604 70641940 -147395218 + L1ME3A LINE L1 5807 6150 -20 330 248 128 0 chr3 70642179 70642304 -147394854 + L1ME4a LINE L1 5967 6107 -14 537 292 23 12 chr3 70643064 70643235 -147393923 + MIR SINE MIR 30 202 -60 661 218 36 6 chr3 70643235 70643400 -147393758 + LTR41 LTR ERVL 1 170 -603 267 266 53 11 chr3 70643915 70644009 -147393149 + MER58B DNA MER1_type 12 109 -232 216 97 0 0 chr3 70644010 70644041 -147393117 + (GGA)n Simple_repeat Simple_repeat 2 32 0 255 220 17 0 chr3 70644079 70644138 -147393020 + MER58B DNA MER1_type 267 326 -15 401 198 176 0 chr3 70644140 70644231 -147392927 + MER5A DNA MER1_type 83 189 0 903 239 24 5 chr3 70644577 70644786 -147392372 - MER20 DNA MER1_type -4 215 3 227 69 0 0 chr3 70645248 70645277 -147391881 - U2 snRNA snRNA -154 34 6 1691 201 3 16 chr3 70645500 70645845 -147391313 - AluJb SINE Alu 0 343 3 440 316 52 37 chr3 70646564 70646833 -147390325 + LTR16A LTR ERVL 33 305 -145 416 248 14 62 chr3 70646926 70647071 -147390087 - L2 LINE L2 -17 3296 3159 603 344 6 0 chr3 70647900 70648083 -147389075 - MIR SINE MIR 0 262 79 300 210 145 0 chr3 70649204 70649266 -147387892 - MER91 DNA MER1_type 0 140 70 354 302 44 103 chr3 70649338 70649590 -147387568 - L2 LINE L2 -5 3267 3031 1847 122 0 23 chr3 70649648 70649911 -147387247 + AluSx SINE Alu 40 296 -16 2823 199 25 66 chr3 70650086 70650215 -147386943 + MER72 LTR ERV1 1 134 -588 1898 117 85 51 chr3 70650215 70650567 -147386591 - THE1B LTR MaLR 0 364 1 2823 199 25 66 chr3 70650567 70651190 -147385968 + MER72 LTR ERV1 134 722 0 382 218 15 53 chr3 70651229 70651334 -147385824 - MER5A DNA MER1_type -83 106 4 219 340 64 0 chr3 70651421 70651515 -147385643 - L2 LINE L2 -635 2679 2580 193 250 66 88 chr3 70651930 70652066 -147385092 + MER5A DNA MER1_type 35 167 -22 517 216 230 0 chr3 70652559 70652698 -147384460 + MER5B DNA MER1_type 4 174 -4 426 270 0 8 chr3 70652723 70652849 -147384309 + MER69A DNA AcHobo 6 130 -47 696 299 36 25 chr3 70652850 70653128 -147384030 - LTR16B LTR ERVL 0 464 184 1893 156 0 13 chr3 70653154 70653456 -147383702 + AluJb SINE Alu 13 310 -2 388 308 118 72 chr3 70654020 70654367 -147382791 - L2 LINE L2 -2 3311 2949 557 300 61 77 chr3 70654420 70654733 -147382425 - L2 LINE L2 -427 2887 2580 28 48 0 0 chr3 70654921 70654963 -147382195 + AT_rich Low_complexity Low_complexity 1 42 0 218 318 0 0 chr3 70655040 70655106 -147382052 - MIR SINE MIR -13 249 184 181 312 119 28 chr3 70655091 70655200 -147381958 + L2 LINE L2 3006 3124 -189 * 206 396 14 22 chr3 70655292 70655431 -147381727 - MIR SINE MIR -123 139 2 262 237 132 53 chr3 70655881 70655995 -147381163 - MIR SINE MIR -50 212 90 426 340 111 16 chr3 70656677 70656921 -147380237 - L2 LINE L2 -202 3070 2804 204 317 89 77 chr3 70656901 70657160 -147379998 + L3 LINE CR1 1315 1576 -1 * 386 176 165 0 chr3 70657446 70657537 -147379621 + L2 LINE L2 3208 3313 0 700 258 46 4 chr3 70658427 70658803 -147378355 + LTR16A LTR ERVL 17 450 0 2309 44 0 0 chr3 70659112 70659383 -147377775 - AluY SINE Alu -1 310 40 321 163 0 0 chr3 70659508 70659557 -147377601 - MIR SINE MIR -108 154 106 190 283 75 0 chr3 70659645 70659698 -147377460 + L3b LINE CR1 1524 1580 -3 217 380 21 31 chr3 70659832 70660001 -147377157 - MIR3 SINE MIR -62 146 7 1884 244 81 15 chr3 70660024 70660556 -147376602 - MLT1F1 LTR MaLR 0 567 1 595 314 193 14 chr3 70660773 70661130 -147376028 + MLT1K LTR MaLR 5 425 -163 210 222 0 0 chr3 70661131 70661176 -147375982 + GA-rich Low_complexity Low_complexity 1 45 0 258 310 143 20 chr3 70661346 70661549 -147375609 - MIR SINE MIR -26 236 9 314 308 25 25 chr3 70661633 70661753 -147375405 - MIR SINE MIR -37 225 106 294 246 0 0 chr3 70661889 70661946 -147375212 - MER81 DNA DNA 0 114 58 297 221 215 47 chr3 70662324 70662502 -147374656 + MIR3 SINE MIR 6 204 -55 1727 200 119 24 chr3 70662681 70663142 -147374016 + MLT1D LTR MaLR 1 505 0 2204 109 3 0 chr3 70663376 70663670 -147373488 + AluSx SINE Alu 1 295 -17 2288 98 0 7 chr3 70663673 70663980 -147373178 + AluSc SINE Alu 1 305 -4 475 370 28 4 chr3 70664163 70664414 -147372744 + MIR SINE MIR 3 259 -3 213 289 67 0 chr3 70664879 70664983 -147372175 + MIR SINE MIR 116 226 -36 294 282 77 42 chr3 70665028 70665202 -147371956 + MIR SINE MIR 34 213 -49 513 292 129 14 chr3 70665554 70665763 -147371395 - MIR SINE MIR -29 233 1 364 324 35 0 chr3 70666085 70666230 -147370928 - MIR SINE MIR -8 254 105 1996 302 87 13 chr3 70666311 70667217 -147369941 + L1M3a LINE L1 18 990 -4965 1689 161 37 3 chr3 70667334 70667714 -147369444 + L1MA9 LINE L1 4244 4636 -1510 1922 174 45 19 chr3 70667714 70667977 -147369181 + L1MA9 LINE L1 5873 6161 -151 306 0 0 0 chr3 70667977 70668011 -147369147 + (CA)n Simple_repeat Simple_repeat 1 34 0 1922 174 45 19 chr3 70668011 70668162 -147368996 + L1MA9 LINE L1 6161 6307 -5 368 208 31 0 chr3 70668185 70668281 -147368877 + MER103 DNA DNA 64 162 -4 21 36 0 0 chr3 70668913 70668941 -147368217 + AT_rich Low_complexity Low_complexity 1 28 0 564 314 98 41 chr3 70669228 70669964 -147367194 + HAL1 LINE L1 267 1044 -1463 36421 35 28 2 chr3 70669966 70674666 -147362492 + L1P LINE L1 1 4822 -1324 645 269 71 52 chr3 70674926 70675234 -147361924 - LTR16C LTR ERVL -3 488 175 1860 194 40 33 chr3 70675336 70675789 -147361369 - MLT1C LTR MaLR -6 461 6 305 297 119 25 chr3 70675858 70675976 -147361182 + HAL1 LINE L1 1273 1401 -1106 1980 133 49 62 chr3 70675977 70676382 -147360776 + MER65A LTR ERV1 2 401 -44 281 106 96 0 chr3 70676405 70676509 -147360649 + (TA)n Simple_repeat Simple_repeat 1 114 0 27 0 0 0 chr3 70676591 70676618 -147360540 + AT_rich Low_complexity Low_complexity 1 27 0 226 126 92 23 chr3 70676647 70676734 -147360424 + (TTAAA)n Simple_repeat Simple_repeat 5 97 0 1576 264 103 31 chr3 70676787 70676863 -147360295 + HAL1 LINE L1 1396 1465 -1042 414 0 0 0 chr3 70676863 70676909 -147360249 + (CA)n Simple_repeat Simple_repeat 1 46 0 1576 264 103 31 chr3 70676909 70677765 -147359393 + HAL1 LINE L1 1465 2395 -112 195 348 109 7 chr3 70678088 70678226 -147358932 + L2 LINE L2 2776 2927 -387 774 268 111 54 chr3 70678591 70678649 -147358509 - MLT1G1 LTR MaLR 0 595 542 2729 189 21 37 chr3 70678649 70679211 -147357947 + MLT2B3 LTR ERVL 1 553 -1 774 268 111 54 chr3 70679211 70679709 -147357449 - MLT1G1 LTR MaLR -53 542 7 2102 121 3 0 chr3 70680253 70680556 -147356602 + AluSq SINE Alu 1 304 0 309 271 28 46 chr3 70680933 70681073 -147356085 + MIR SINE MIR 40 181 -27 349 315 46 46 chr3 70681207 70681423 -147355735 - L2 LINE L2 0 3313 3098 601 255 138 5 chr3 70681597 70681793 -147355365 - L2 LINE L2 -515 2799 2578 572 315 180 7 chr3 70682022 70682327 -147354831 - L2 LINE L2 -742 2572 2215 200 182 114 0 chr3 70683053 70683097 -147354061 + MIR SINE MIR 112 160 -102 1815 130 3 0 chr3 70683653 70683946 -147353212 - L1MA6 LINE L1 0 6300 6007 186 231 26 0 chr3 70684116 70684155 -147353003 - MIR SINE MIR -76 132 93 204 40 0 0 chr3 70684314 70684339 -147352819 + (TG)n Simple_repeat Simple_repeat 2 26 0 231 220 17 17 chr3 70684400 70684459 -147352699 + MLT1K LTR MaLR 1 59 -529 929 243 10 0 chr3 70684716 70684918 -147352240 - MER58A DNA MER1_type -10 214 11 312 271 31 31 chr3 70684959 70685088 -147352070 + LTR67 LTR ERVL 429 557 0 16914 26 6 0 chr3 70685472 70688231 -147348927 + L1PA2 LINE L1 3392 6155 0 934 240 16 0 chr3 70688262 70688504 -147348654 + L1ME3A LINE L1 5812 6057 -113 332 167 0 0 chr3 70688581 70688629 -147348529 - MER5B DNA MER1_type -130 48 1 219 186 0 0 chr3 70688649 70688692 -147348466 + CT-rich Low_complexity Low_complexity 2 44 0 219 318 45 11 chr3 70688746 70688834 -147348324 - L2 LINE L2 -30 3283 3193 412 57 0 0 chr3 70689111 70689164 -147347994 - Alu SINE Alu -15 295 243 523 292 41 12 chr3 70689275 70689446 -147347712 - MIR SINE MIR -73 189 14 508 319 19 38 chr3 70689839 70690105 -147347053 + L2 LINE L2 2147 2407 -907 933 234 133 13 chr3 70690129 70690724 -147346434 - LTR50 LTR ERVL 0 795 42 338 344 33 33 chr3 70690757 70691001 -147346157 + L2 LINE L2 2422 2665 -649 533 227 36 0 chr3 70691004 70691114 -147346044 - L2 LINE L2 0 3313 3200 390 188 0 0 chr3 70691177 70691246 -147345912 + Tigger2 DNA MER2_type 1 69 -2649 * 2366 143 39 9 chr3 70691230 70691669 -147345489 + Tigger2 DNA MER2_type 2267 2718 0 521 288 118 60 chr3 70691687 70692237 -147344921 + L2 LINE L2 2731 3312 -1 422 94 0 16 chr3 70692447 70692511 -147344647 + Alu SINE Alu 14 76 -234 273 344 25 0 chr3 70692646 70692768 -147344390 + MIR SINE MIR 128 252 -10 25 0 0 0 chr3 70692981 70693006 -147344152 + AT_rich Low_complexity Low_complexity 1 25 0 506 185 0 0 chr3 70693009 70693090 -147344068 - AluSg/x SINE Alu -25 287 207 41016 29 22 1 chr3 70693432 70699438 -147337720 + L1PA2 LINE L1 22 6155 0 210 37 0 0 chr3 70699457 70699484 -147337674 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 339 320 69 40 chr3 70699986 70700161 -147336997 - MIR3 SINE MIR -7 201 22 3355 99 4 6 chr3 70700309 70700803 -147336355 + L1PA8 LINE L1 5680 6172 0 554 213 118 41 chr3 70700915 70701136 -147336022 - MER113 DNA MER1_type? -211 310 73 302 239 130 0 chr3 70701173 70701265 -147335893 - MIR SINE MIR -61 201 98 350 367 106 5 chr3 70701495 70701694 -147335464 - MIR SINE MIR -24 238 20 181 279 73 44 chr3 70702320 70702388 -147334770 - L2 LINE L2 -19 3294 3225 228 286 152 55 chr3 70702430 70702502 -147334656 + L2 LINE L2 3075 3139 -174 252 0 0 0 chr3 70702502 70702530 -147334628 + (TG)n Simple_repeat Simple_repeat 2 29 0 228 286 152 55 chr3 70702530 70702674 -147334484 + L2 LINE L2 3139 3312 -1 250 345 17 6 chr3 70703565 70703739 -147333419 + CT-rich Low_complexity Low_complexity 1 176 0 1715 178 7 10 chr3 70703956 70704254 -147332904 + AluJb SINE Alu 1 297 -15 265 316 51 0 chr3 70704713 70704830 -147332328 + MIR3 SINE MIR 78 200 -8 304 279 81 0 chr3 70705451 70705537 -147331621 - L2 LINE L2 -1 3312 3220 6249 46 16 1 chr3 70705784 70706590 -147330568 - L1PA8 LINE L1 -25 6147 5330 473 312 87 68 chr3 70707051 70707174 -147329984 - LTR67 LTR ERVL 0 557 438 5580 120 5 27 chr3 70707174 70708094 -147329064 + L1PA15 LINE L1 5254 6161 -4 473 312 87 68 chr3 70708094 70708502 -147328656 - LTR67 LTR ERVL -119 438 16 378 171 0 14 chr3 70708617 70708687 -147328471 + Tigger2 DNA MER2_type 1 69 -2649 * 2563 139 33 0 chr3 70708685 70709110 -147328048 + Tigger2 DNA MER2_type 2280 2718 0 239 264 157 84 chr3 70709195 70709373 -147327785 + Charlie8 DNA MER1_type 29 219 -2198 489 346 6 0 chr3 70709594 70709753 -147327405 + MIR3 SINE MIR 30 189 -19 1435 169 73 0 chr3 70709938 70710132 -147327026 - L1MD2 LINE L1 -10 6349 6128 333 0 0 0 chr3 70710132 70710169 -147326989 + (TG)n Simple_repeat Simple_repeat 2 38 0 1435 169 73 0 chr3 70710169 70710247 -147326911 - L1MD2 LINE L1 -231 6128 6057 195 278 135 32 chr3 70711089 70711215 -147325943 + MIR3 SINE MIR 15 153 -55 199 305 191 43 chr3 70711251 70711392 -147325766 + MIR SINE MIR 22 183 -79 425 304 54 22 chr3 70711839 70712023 -147325135 - MIR SINE MIR -1 261 72 411 325 4 68 chr3 70712177 70712411 -147324747 - L2 LINE L2 -212 3060 2842 591 292 46 43 chr3 70712480 70712809 -147324349 + MER102b DNA MER1_type 1 330 -11 1873 95 63 4 chr3 70712955 70713232 -147323926 + AluSc SINE Alu 11 302 0 677 204 83 0 chr3 70713248 70713405 -147323753 - MER3 DNA MER1_type 0 209 40 828 65 0 0 chr3 70713414 70713521 -147323637 + L1PA5 LINE L1 6046 6152 -2 21 0 0 0 chr3 70713521 70713542 -147323616 + AT_rich Low_complexity Low_complexity 1 21 0 396 292 26 19 chr3 70713542 70713696 -147323462 + L1ME LINE L1 4906 5060 -1086 1742 215 50 34 chr3 70714047 70714544 -147322614 - MLT1D LTR MaLR 0 505 1 316 279 112 0 chr3 70714574 70714735 -147322423 + L1ME LINE L1 5621 5799 -322 2050 281 41 53 chr3 70715747 70716524 -147320634 + L1M3b LINE L1 660 1427 -4854 901 135 0 0 chr3 70716532 70716665 -147320493 + AluSc SINE Alu 171 303 -6 545 137 20 42 chr3 70716665 70716693 -147320465 + L1M3b LINE L1 1440 1467 -4814 2151 125 7 0 chr3 70716693 70716989 -147320169 + AluSq SINE Alu 2 299 -14 545 137 20 42 chr3 70716989 70717134 -147320024 + L1M3b LINE L1 1467 1598 -4683 * 621 101 221 0 chr3 70717133 70717282 -147319876 + L1MA4 LINE L1 6097 6278 -22 1729 273 60 16 chr3 70717300 70718263 -147318895 + L1M1 LINE L1 1199 2308 -4074 527 233 64 20 chr3 70718277 70718526 -147318632 + L1M1 LINE L1 3272 3531 -2851 1038 167 0 32 chr3 70718526 70718712 -147318446 + AluSg/x SINE Alu 114 293 -19 7143 182 14 5 chr3 70718712 70720229 -147316929 + L1M1 LINE L1 3523 5053 -1329 835 243 42 11 chr3 70720227 70720511 -147316647 + L1MA7 LINE L1 5999 6291 0 * 198 0 0 0 chr3 70720653 70720675 -147316483 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 289 286 82 54 chr3 70721086 70721233 -147315925 + MER5A DNA MER1_type 17 167 -22 21 0 0 0 chr3 70721384 70721405 -147315753 + AT_rich Low_complexity Low_complexity 1 21 0 526 306 45 24 chr3 70721547 70721877 -147315281 + L1ME4a LINE L1 5546 5882 -239 185 216 0 0 chr3 70722130 70722167 -147314991 - MER5B DNA MER1_type -1 177 141 303 93 0 0 chr3 70722176 70722219 -147314939 - L1PA5 LINE L1 -214 5940 5898 1728 52 0 0 chr3 70722219 70722430 -147314728 + L1PA5 LINE L1 5934 6146 -8 518 237 23 38 chr3 70722455 70722586 -147314572 + MER5B DNA MER1_type 46 174 -4 791 176 14 0 chr3 70723502 70723644 -147313514 - BC200 scRNA scRNA -56 144 1 196 301 14 27 chr3 70724234 70724307 -147312851 + L2 LINE L2 3242 3313 0 2154 162 3 0 chr3 70724900 70725252 -147311906 - MLT1A1 LTR MaLR 0 365 13 470 104 39 0 chr3 70725567 70725644 -147311514 - MADE1 DNA Mariner 0 80 1 264 30 0 0 chr3 70725669 70725702 -147311456 + (TG)n Simple_repeat Simple_repeat 1 33 0 281 220 170 50 chr3 70726279 70726438 -147310720 - L2 LINE L2 -529 2785 2608 3180 83 0 0 chr3 70726857 70727305 -147309853 - L1PA7 LINE L1 -1521 4625 4178 6904 65 0 2 chr3 70727308 70728824 -147308334 + L1PA7 LINE L1 4629 6143 -11 327 25 0 0 chr3 70729092 70729132 -147308026 + (CA)n Simple_repeat Simple_repeat 1 40 0 2180 109 26 3 chr3 70729406 70729708 -147307450 - AluSp SINE Alu -2 311 3 12615 182 31 23 chr3 70729876 70733008 -147304150 - L1MA5 LINE L1 -1 6299 3159 285 51 0 0 chr3 70733008 70733047 -147304111 + (TG)n Simple_repeat Simple_repeat 2 40 0 12615 182 31 23 chr3 70733047 70734091 -147303067 - L1MA5 LINE L1 -3141 3159 2125 497 240 142 33 chr3 70734109 70734292 -147302866 - MLT1F1 LTR MaLR -188 379 177 396 138 0 0 chr3 70734292 70734357 -147302801 + (GA)n Simple_repeat Simple_repeat 2 66 0 291 261 46 69 chr3 70734395 70734525 -147302633 - MLT1F1 LTR MaLR -522 132 6 342 45 0 0 chr3 70734536 70734580 -147302578 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 484 317 31 6 chr3 70734834 70734995 -147302163 - MIR SINE MIR -90 172 8 319 352 0 23 chr3 70735235 70735411 -147301747 + (TCCA)n Simple_repeat Simple_repeat 4 175 0 189 94 0 0 chr3 70736295 70736327 -147300831 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 232 323 0 20 chr3 70736390 70736414 -147300744 + CT-rich Low_complexity Low_complexity 3 26 -73 2218 147 25 0 chr3 70736414 70736769 -147300389 - THE1B LTR MaLR 0 364 1 232 323 0 20 chr3 70736769 70736843 -147300315 + CT-rich Low_complexity Low_complexity 26 99 0 234 205 134 45 chr3 70736985 70737097 -147300061 + MIR SINE MIR 141 262 0 1549 203 0 38 chr3 70738993 70739309 -147297849 - AluJo SINE Alu -8 304 1 237 220 0 0 chr3 70740022 70740072 -147297086 - MER33 DNA MER1_type -2 361 312 1629 175 11 11 chr3 70740082 70740362 -147296796 - AluJb SINE Alu -26 286 7 2418 96 3 3 chr3 70740381 70740694 -147296464 - AluSp SINE Alu 0 313 1 754 105 134 43 chr3 70740694 70740903 -147296255 - MER33 DNA MER1_type -40 284 57 1303 237 142 2 chr3 70741698 70742120 -147295038 - L1ME1 LINE L1 -3 6163 5683 1179 117 0 0 chr3 70742215 70742395 -147294763 + (TA)n Simple_repeat Simple_repeat 1 180 0 225 93 93 0 chr3 70742423 70742477 -147294681 + L1MCa LINE L1 2006 2064 -4362 308 189 14 0 chr3 70742607 70742681 -147294477 + (TA)n Simple_repeat Simple_repeat 1 75 0 545 289 47 52 chr3 70743574 70743785 -147293373 - MIR SINE MIR 0 262 53 286 362 81 11 chr3 70744195 70744369 -147292789 - MIR SINE MIR -19 243 58 435 333 23 17 chr3 70745763 70745940 -147291218 + MIR3 SINE MIR 19 196 -12 229 284 181 19 chr3 70746103 70746258 -147290900 + L3b LINE CR1 1208 1387 -196 327 256 0 60 chr3 70746429 70746546 -147290612 + MER103 DNA DNA 55 164 -2 435 92 0 0 chr3 70746729 70746794 -147290364 + (TA)n Simple_repeat Simple_repeat 1 65 0 199 363 25 0 chr3 70747282 70747362 -147289796 + L2 LINE L2 2644 2725 -589 2112 124 0 10 chr3 70747407 70747713 -147289445 + AluSq SINE Alu 1 303 -10 1183 215 106 17 chr3 70747833 70748269 -147288889 - MLT1C LTR MaLR -4 501 1 2222 109 7 13 chr3 70748377 70748680 -147288478 - AluSx SINE Alu -11 301 1 235 295 98 36 chr3 70748839 70748951 -147288207 + L2 LINE L2 3112 3230 -42 236 326 95 0 chr3 70749831 70749926 -147287232 + MER5A DNA MER1_type 85 188 -1 670 140 0 0 chr3 70750023 70750123 -147287035 + AluS SINE Alu 1 100 -213 958 100 0 0 chr3 70750123 70750277 -147286881 + AluYa5 SINE Alu 152 305 0 24 32 0 0 chr3 70751686 70751717 -147285441 + AT_rich Low_complexity Low_complexity 1 31 0 267 54 0 0 chr3 70751727 70751764 -147285394 + (CA)n Simple_repeat Simple_repeat 2 38 0 299 275 88 0 chr3 70752426 70752517 -147284641 + L2 LINE L2 3153 3251 -21 290 170 0 0 chr3 70752532 70752585 -147284573 - MER103 DNA DNA -72 94 42 1661 83 9 0 chr3 70752808 70753026 -147284132 + AluY SINE Alu 80 299 -12 275 250 170 9 chr3 70753541 70753653 -147283505 + L2 LINE L2 3180 3309 -4 319 179 0 24 chr3 70754445 70754529 -147282629 + CT-rich Low_complexity Low_complexity 3 84 0 2195 106 7 0 chr3 70754767 70755059 -147282099 - AluSx SINE Alu -18 294 1 41022 29 22 1 chr3 70755401 70761407 -147275751 - L1PA2 LINE L1 0 6155 22 506 185 0 0 chr3 70761749 70761830 -147275328 + AluSg/x SINE Alu 205 285 -25 25 0 0 0 chr3 70761833 70761858 -147275300 + AT_rich Low_complexity Low_complexity 1 25 0 273 344 25 0 chr3 70762071 70762193 -147274965 - MIR SINE MIR -10 252 128 422 94 0 16 chr3 70762328 70762392 -147274766 - Alu SINE Alu -235 76 14 521 288 118 60 chr3 70762602 70763152 -147274006 - L2 LINE L2 -1 3312 2731 2366 143 39 9 chr3 70763170 70763609 -147273549 - Tigger2 DNA MER2_type 0 2718 2267 390 188 0 0 chr3 70763593 70763662 -147273496 - Tigger2 DNA MER2_type -2649 69 1 * 533 227 36 0 chr3 70763725 70763835 -147273323 + L2 LINE L2 3200 3313 0 338 344 33 33 chr3 70763838 70764082 -147273076 - L2 LINE L2 -649 2665 2422 933 234 133 13 chr3 70764115 70764710 -147272448 + LTR50 LTR ERVL 42 795 0 508 319 19 38 chr3 70764734 70765000 -147272158 - L2 LINE L2 -907 2407 2147 634 315 43 8 chr3 70765393 70765628 -147271530 + MIR SINE MIR 14 256 -6 225 0 0 0 chr3 70765704 70765729 -147271429 + (T)n Simple_repeat Simple_repeat 1 25 0 23 33 0 0 chr3 70766068 70766098 -147271060 + AT_rich Low_complexity Low_complexity 1 30 0 2068 146 7 0 chr3 70766204 70766505 -147270653 - AluSx SINE Alu -5 307 5 229 146 21 0 chr3 70766610 70766658 -147270500 - MLT1J2 LTR MaLR -34 416 368 239 234 99 27 chr3 70766771 70766882 -147270276 - MLT1J2 LTR MaLR -232 218 100 359 188 10 31 chr3 70767272 70767368 -147269790 + LTR67 LTR ERVL 458 551 -6 285 305 14 85 chr3 70767520 70767661 -147269497 + L2 LINE L2 3141 3271 -1 261 371 79 0 chr3 70767679 70767768 -147269390 - L2 LINE L2 -75 3197 3102 1984 138 3 19 chr3 70767804 70768123 -147269035 + MER1B DNA MER1_type 26 339 0 221 320 40 10 chr3 70768339 70768439 -147268719 - L2 LINE L2 -487 2827 2725 290 367 25 35 chr3 70768582 70768868 -147268290 - HERV16 LTR ERVL -655 5109 4827 341 314 42 0 chr3 70769045 70769163 -147267995 - HERV16 LTR ERVL -4873 123 1 397 281 16 0 chr3 70769178 70769306 -147267852 - LTR16A LTR ERVL -15 435 306 5532 131 21 42 chr3 70769308 70770709 -147266449 + L1MA4A LINE L1 4955 6303 0 883 311 12 16 chr3 70770732 70771054 -147266104 - LTR16A LTR ERVL -105 345 25 638 256 54 98 chr3 70771161 70771661 -147265497 - MLT1J LTR MaLR -33 478 1 302 304 176 7 chr3 70771677 70771825 -147265333 - L2 LINE L2 -521 2793 2621 225 0 0 0 chr3 70772625 70772650 -147264508 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 352 337 107 12 chr3 70772793 70772962 -147264196 + MIR SINE MIR 48 232 -30 486 92 40 0 chr3 70773487 70773563 -147263595 + MADE1 DNA Mariner 1 79 -1 248 167 0 0 chr3 70773661 70773703 -147263455 + MER113 DNA MER1_type? 454 495 -26 738 287 49 4 chr3 70774303 70774547 -147262611 + MIR SINE MIR 8 262 0 3333 87 49 4 chr3 70774681 70775175 -147261983 + L1PB2 LINE L1 5633 6148 -3 2185 116 0 10 chr3 70775886 70776197 -147260961 - AluSx SINE Alu -4 308 1 273 289 99 0 chr3 70776321 70776442 -147260716 + MIR3 SINE MIR 42 174 -34 318 331 69 29 chr3 70776775 70776950 -147260208 + MER5A DNA MER1_type 8 189 0 210 398 41 0 chr3 70777053 70777151 -147260007 + L2 LINE L2 2737 2838 -476 2311 99 54 25 chr3 70777719 70778073 -147259085 - THE1B LTR MaLR 0 364 1 799 229 38 68 chr3 70778576 70778916 -147258242 - L1MD2 LINE L1 -3 6356 6027 337 331 51 11 chr3 70779140 70779315 -147257843 - MER5A DNA MER1_type 0 189 8 4034 246 27 18 chr3 70779423 70780770 -147256388 - L1M4 LINE L1 -860 5286 3928 3066 185 37 11 chr3 70780883 70781580 -147255578 - L1MDb LINE L1 -5026 1383 669 1472 279 23 5 chr3 70781558 70781988 -147255170 - L1MDb LINE L1 -5963 446 9 * 990 289 47 34 chr3 70784629 70785016 -147252142 + MLT1L LTR MaLR 3 394 -221 491 254 15 0 chr3 70785057 70785187 -147251971 + MLT1L LTR MaLR 476 607 -8 449 355 133 46 chr3 70785509 70786211 -147250947 + L1MEd LINE L1 134 896 -5223 342 322 41 34 chr3 70786233 70786629 -147250529 + L1MEd LINE L1 896 1193 -4834 399 263 119 0 chr3 70786724 70786842 -147250316 - MIR SINE MIR 0 262 131 212 0 36 0 chr3 70787212 70787240 -147249918 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 501 290 61 28 chr3 70787306 70787760 -147249398 - LTR33A LTR ERVL -18 505 9 279 0 0 0 chr3 70789022 70789053 -147248105 + (GA)n Simple_repeat Simple_repeat 1 31 0 * 492 18 0 0 chr3 70789052 70789109 -147248049 + (TG)n Simple_repeat Simple_repeat 1 57 0 1011 252 170 29 chr3 70789716 70790057 -147247101 - L2 LINE L2 -3 3310 2922 229 327 13 50 chr3 70790193 70790283 -147246875 + MIR SINE MIR 110 193 -69 763 132 23 0 chr3 70790283 70790412 -147246746 + L1PA10 LINE L1 6021 6152 -16 229 327 13 50 chr3 70790412 70790480 -147246678 + MIR SINE MIR 193 262 0 354 283 53 9 chr3 70791542 70791655 -147245503 + MIR SINE MIR 57 174 -88 21 57 0 0 chr3 70792405 70792440 -147244718 + AT_rich Low_complexity Low_complexity 1 35 0 548 283 72 20 chr3 70792523 70792774 -147244384 + L1MC4a LINE L1 5381 5644 -2164 1363 123 9 0 chr3 70792828 70793040 -147244118 + L1PB1 LINE L1 5930 6143 -8 1471 175 43 7 chr3 70793360 70793663 -147243495 + L1MA5 LINE L1 5984 6297 -3 226 0 29 29 chr3 70793668 70793703 -147243455 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 317 286 130 36 chr3 70793755 70793947 -147243211 - MIR SINE MIR 0 262 53 458 266 147 0 chr3 70793989 70794132 -147243026 - MIR SINE MIR -89 173 10 285 265 20 10 chr3 70794555 70794653 -147242505 + L1MC4a LINE L1 5784 5882 -1926 255 276 16 8 chr3 70795377 70795500 -147241658 + L1MC4a LINE L1 5788 5911 -1897 697 264 114 42 chr3 70796061 70796100 -147241058 - MARNA DNA Mariner -57 529 494 2122 133 7 0 chr3 70796100 70796402 -147240756 + AluSx SINE Alu 1 304 -8 697 264 114 42 chr3 70796402 70796835 -147240323 - MARNA DNA Mariner -92 494 23 6633 28 0 1 chr3 70796890 70797671 -147239487 + L1PA4 LINE L1 5374 6153 -2 363 203 170 20 chr3 70797694 70797847 -147239311 - MER112 DNA MER1_type -1 259 84 289 133 0 0 chr3 70797990 70798035 -147239123 - MER20 DNA MER1_type -56 163 119 1745 128 55 83 chr3 70798038 70798422 -147238736 + MLT1B LTR MaLR 4 376 -14 449 205 16 49 chr3 70798425 70798547 -147238611 - MER20 DNA MER1_type -98 121 4 40884 47 8 1 chr3 70798954 70805084 -147232074 + L1PA3 LINE L1 2 6168 0 2383 44 0 0 chr3 70805087 70805380 -147231778 + L1PA4 LINE L1 5861 6153 -2 230 253 22 121 chr3 70806252 70806303 -147230855 + MIR3 SINE MIR 111 151 -57 585 250 82 82 chr3 70806303 70806631 -147230527 - MER102a DNA MER1_type -1 329 2 230 253 22 121 chr3 70806631 70806670 -147230488 + MIR3 SINE MIR 151 192 -16 271 267 27 0 chr3 70806716 70806791 -147230367 - MIR SINE MIR -14 248 172 808 280 122 24 chr3 70806796 70807287 -147229871 - MLT1G1 LTR MaLR -14 581 1 365 307 15 36 chr3 70807310 70807447 -147229711 - MIR SINE MIR -107 155 22 1727 124 49 78 chr3 70807986 70808372 -147228786 - THE1C LTR MaLR 0 375 1 2316 123 0 0 chr3 70808584 70808893 -147228265 - AluSx SINE Alu -3 309 1 262 328 129 26 chr3 70809080 70809196 -147227962 + L2 LINE L2 3143 3270 -2 200 217 0 22 chr3 70809705 70809751 -147227407 + L2 LINE L2 3264 3308 -5 2364 85 0 13 chr3 70809762 70810069 -147227089 + AluSq SINE Alu 1 303 -10 315 172 280 11 chr3 70810278 70810371 -147226787 - ORSL DNA AcHobo -157 118 1 2246 139 39 35 chr3 70811692 70812124 -147225034 - Tigger2a DNA MER2_type 0 434 1 2086 133 36 0 chr3 70812549 70812850 -147224308 + AluSx SINE Alu 1 312 0 239 323 42 31 chr3 70813112 70813208 -147223950 - L2 LINE L2 -17 3255 3159 299 257 14 0 chr3 70813208 70813278 -147223880 - L2 LINE L2 0 3272 3202 509 235 208 0 chr3 70813994 70814143 -147223015 + MIR SINE MIR 78 257 -5 1294 50 11 11 chr3 70814203 70814382 -147222776 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 746 285 18 18 chr3 70815516 70815744 -147221414 - MIR SINE MIR -34 228 1 2212 172 64 5 chr3 70815825 70816260 -147220898 + LOR1b LTR ERV1 1 461 0 180 359 43 53 chr3 70816298 70816507 -147220651 + L3b LINE CR1 1109 1315 -268 485 327 30 20 chr3 70816623 70816825 -147220333 + MIR SINE MIR 57 260 -2 252 360 126 0 chr3 70817931 70818042 -147219116 + L2 LINE L2 3180 3304 -9 947 157 17 96 chr3 70818042 70818272 -147218886 - MER20 DNA MER1_type -4 215 4 298 303 207 0 chr3 70819001 70819146 -147218012 + MIR SINE MIR 86 260 -2 207 338 0 25 chr3 70819213 70819293 -147217865 + MIR SINE MIR 9 86 -176 1075 243 33 33 chr3 70819293 70819627 -147217531 - MLT1I LTR MaLR -2 407 74 398 273 38 77 chr3 70819737 70819920 -147217238 - MIR SINE MIR -5 257 82 251 157 20 0 chr3 70820420 70820471 -147216687 + CT-rich Low_complexity Low_complexity 2 53 0 766 253 30 10 chr3 70820496 70820698 -147216460 + MIR SINE MIR 57 262 0 276 271 89 76 chr3 70821044 70821269 -147215889 + L2 LINE L2 3044 3271 -1 27 49 0 0 chr3 70821284 70821325 -147215833 + AT_rich Low_complexity Low_complexity 1 41 0 339 274 111 44 chr3 70823617 70823752 -147213406 + MER5A DNA MER1_type 44 187 -2 183 349 59 40 chr3 70823771 70823923 -147213235 + L2 LINE L2 2897 3051 -221 212 119 0 24 chr3 70824068 70824110 -147213048 + (TG)n Simple_repeat Simple_repeat 1 41 0 277 258 57 50 chr3 70824718 70824740 -147212418 + L1MC/D LINE L1 5664 5684 -2124 1995 168 22 19 chr3 70824740 70825104 -147212054 - MLT1A1 LTR MaLR 0 365 1 277 258 57 50 chr3 70825104 70825240 -147211918 + L1MC/D LINE L1 5684 5823 -1985 721 143 0 0 chr3 70825243 70825348 -147211810 + FLAM_C SINE Alu 1 105 -38 1050 179 23 0 chr3 70825875 70826048 -147211110 + AluJb SINE Alu 129 305 -7 418 83 0 0 chr3 70826967 70827027 -147210131 - Alu SINE Alu -11 301 242 2371 67 30 0 chr3 70827154 70827451 -147209707 - AluY SINE Alu -5 306 1 266 280 131 19 chr3 70828269 70828376 -147208782 - MIR SINE MIR -141 121 3 699 272 31 5 chr3 70829066 70829261 -147207897 + MIR SINE MIR 49 248 -14 242 253 77 11 chr3 70830104 70830195 -147206963 + MIR SINE MIR 118 214 -48 351 374 108 47 chr3 70830512 70830918 -147206240 + L2 LINE L2 2811 3241 -31 274 321 54 0 chr3 70832340 70832452 -147204706 + MIR SINE MIR 120 237 -25 2754 148 5 7 chr3 70832627 70833060 -147204098 - MSTB1 LTR MaLR 0 432 1 2430 68 0 0 chr3 70833192 70833487 -147203671 + AluY SINE Alu 1 295 -16 557 250 7 53 chr3 70833487 70833639 -147203519 - MIR SINE MIR -117 145 1 344 282 81 8 chr3 70834589 70834713 -147202445 + MIR SINE MIR 74 206 -56 228 67 0 0 chr3 70835163 70835193 -147201965 + (TC)n Simple_repeat Simple_repeat 1 30 0 1851 154 46 6 chr3 70835213 70835538 -147201620 - MER7A DNA MER2_type -9 337 2 1292 134 14 0 chr3 70835562 70835778 -147201380 - L1MA5 LINE L1 -4 6296 6078 461 271 144 17 chr3 70835829 70836010 -147201148 + MIR SINE MIR 41 244 -18 246 341 0 13 chr3 70836527 70836628 -147200530 - MIR SINE MIR -100 108 9 2047 170 124 7 chr3 70836881 70837126 -147200032 - MLT1C LTR MaLR 0 467 252 180 0 0 0 chr3 70837126 70837146 -147200012 + (TG)n Simple_repeat Simple_repeat 1 20 0 2047 170 124 7 chr3 70837146 70837318 -147199840 - MLT1C LTR MaLR -215 252 1 293 282 106 36 chr3 70837338 70837668 -147199490 - L1ME4a LINE L1 -220 5901 5549 21 0 0 0 chr3 70838110 70838131 -147199027 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 70838381 70838402 -147198756 + AT_rich Low_complexity Low_complexity 1 21 0 506 341 37 18 chr3 70838566 70838783 -147198375 - MIR SINE MIR -10 252 32 262 262 48 29 chr3 70839490 70839593 -147197565 - Charlie8 DNA MER1_type -2185 232 128 22 35 0 0 chr3 70840126 70840155 -147197003 + AT_rich Low_complexity Low_complexity 1 29 0 649 172 60 112 chr3 70840192 70840407 -147196751 + MER3 DNA MER1_type 2 205 -4 1758 161 107 125 chr3 70841030 70841639 -147195519 - LTR8A LTR ERV1 -129 598 1 262 291 120 64 chr3 70841701 70841935 -147195223 - LTR16C LTR ERVL -3 488 242 966 193 89 0 chr3 70842004 70842206 -147194952 - LTR16C LTR ERVL 0 491 272 251 267 13 27 chr3 70842201 70842276 -147194882 - MLT1J1 LTR MaLR -315 131 58 * 261 70 53 18 chr3 70842724 70842781 -147194377 + T-rich Low_complexity Low_complexity 2 60 0 216 0 0 0 chr3 70843674 70843698 -147193460 + (TCTA)n Simple_repeat Simple_repeat 1 24 0 1581 232 60 37 chr3 70843825 70844260 -147192898 + LTR16A1 LTR ERVL 13 457 0 212 220 0 85 chr3 70844430 70844489 -147192669 + MIR SINE MIR 92 145 -63 190 326 0 0 chr3 70844616 70844662 -147192496 + L2 LINE L2 3211 3256 -16 337 330 29 0 chr3 70845272 70845375 -147191783 + L2 LINE L2 3207 3312 -1 252 279 163 39 chr3 70845731 70845860 -147191298 - MIR SINE MIR -90 172 28 23 33 0 0 chr3 70845946 70845976 -147191182 + AT_rich Low_complexity Low_complexity 1 30 0 1113 209 4 0 chr3 70846118 70846367 -147190791 + L1MA4 LINE L1 6016 6265 -35 367 268 28 35 chr3 70846625 70846767 -147190391 + MIR3 SINE MIR 4 144 -64 21 0 0 0 chr3 70847096 70847117 -147190041 + AT_rich Low_complexity Low_complexity 1 21 0 345 24 0 0 chr3 70847684 70847726 -147189432 + (TG)n Simple_repeat Simple_repeat 2 43 0 28 29 0 0 chr3 70848114 70848149 -147189009 + AT_rich Low_complexity Low_complexity 1 35 0 250 345 44 18 chr3 70848230 70848343 -147188815 + MIR SINE MIR 28 143 -65 399 173 93 0 chr3 70848363 70848438 -147188720 + MLT1F1 LTR MaLR 1 82 -460 1260 258 29 3 chr3 70848455 70848761 -147188397 + MLT1F1 LTR MaLR 252 565 -2 489 266 27 30 chr3 70848894 70849048 -147188110 - MER5A DNA MER1_type -5 184 20 368 294 11 0 chr3 70849144 70849236 -147187922 - MER81 DNA DNA 0 114 22 182 330 71 92 chr3 70849280 70849562 -147187596 + L2 LINE L2 2941 3216 -56 227 291 0 0 chr3 70850316 70850371 -147186787 - MIR SINE MIR 0 262 208 594 270 35 11 chr3 70850469 70850643 -147186515 - MIR SINE MIR -75 187 10 3826 268 34 32 chr3 70851734 70853195 -147183963 - L1MEc LINE L1 -4595 1801 338 263 218 0 36 chr3 70853660 70853715 -147183443 - MLT1K LTR MaLR -66 522 470 510 327 65 21 chr3 70853831 70854167 -147182991 - MLT1K LTR MaLR -162 426 76 1414 123 81 30 chr3 70854768 70855003 -147182155 + MER1B DNA MER1_type 133 339 0 378 361 28 0 chr3 70855220 70855364 -147181794 + MIR3 SINE MIR 20 167 -41 274 263 76 118 chr3 70855682 70856063 -147181095 + L2 LINE L2 1214 1578 -1736 329 335 187 18 chr3 70856100 70856431 -147180727 + L2 LINE L2 2853 3239 -74 2187 124 17 8 chr3 70856562 70856917 -147180241 - L1PB1 LINE L1 0 6867 6510 14788 190 17 8 chr3 70857056 70862069 -147175089 - L1PB1 LINE L1 -424 6443 1372 1458 139 8 0 chr3 70862066 70862317 -147174841 - L1 LINE L1 -1229 4917 4665 * 1966 145 8 21 chr3 70862315 70862688 -147174470 + L1 LINE L1 4282 4649 -1497 264 327 37 32 chr3 70862701 70862855 -147174303 - L1ME LINE L1 -290 5831 5674 1728 196 0 3 chr3 70862855 70863156 -147174002 - AluJo SINE Alu -12 300 1 264 327 37 32 chr3 70863156 70863218 -147173940 - L1ME LINE L1 -447 5674 5614 258 287 33 49 chr3 70863434 70863556 -147173602 + L2 LINE L2 3150 3269 -3 204 368 51 43 chr3 70864444 70864561 -147172597 + L2 LINE L2 3133 3250 -22 537 297 68 31 chr3 70865213 70865435 -147171723 - MIR SINE MIR -31 231 2 314 313 40 0 chr3 70865505 70865604 -147171554 - MIR SINE MIR -74 188 86 205 195 0 0 chr3 70866605 70866646 -147170512 + A-rich Low_complexity Low_complexity 3 43 0 733 265 91 4 chr3 70866703 70866933 -147170225 - MIR SINE MIR -11 251 2 257 272 183 39 chr3 70867046 70867226 -147169932 - MIR SINE MIR -45 217 12 498 356 28 5 chr3 70867248 70867464 -147169694 - L2 LINE L2 -493 2821 2601 368 360 62 0 chr3 70869033 70869211 -147167947 - MIR SINE MIR -59 203 15 1209 222 102 125 chr3 70870105 70870827 -147166331 + L1ME3A LINE L1 5455 6160 -10 182 244 74 104 chr3 70871731 70871866 -147165292 + L2 LINE L2 3175 3305 -8 26 30 0 0 chr3 70872076 70872109 -147165049 + AT_rich Low_complexity Low_complexity 1 33 0 787 268 69 9 chr3 70872115 70872346 -147164812 - MIR SINE MIR -14 248 4 468 289 58 15 chr3 70873520 70873619 -147163539 - MIR SINE MIR -4 258 165 201 74 0 0 chr3 70873619 70873646 -147163512 + (TTA)n Simple_repeat Simple_repeat 2 28 0 468 289 58 15 chr3 70873646 70873744 -147163414 - MIR SINE MIR -97 165 48 516 271 15 45 chr3 70873970 70874169 -147162989 - MER117 DNA MER1_type -1 196 4 296 256 2 0 chr3 70874625 70874700 -147162458 - MIR SINE MIR -51 157 81 254 204 56 0 chr3 70874735 70874789 -147162369 - L2 LINE L2 -10 3262 3206 223 376 81 34 chr3 70875064 70875447 -147161711 + L2 LINE L2 2912 3312 -1 579 298 132 4 chr3 70875501 70875729 -147161429 - MIR SINE MIR 0 262 6 720 194 54 68 chr3 70875736 70875958 -147161200 - MER20 DNA MER1_type 0 219 1 1663 192 3 7 chr3 70876325 70876622 -147160536 - AluJo SINE Alu -16 296 1 387 0 0 0 chr3 70877420 70877463 -147159695 + (TG)n Simple_repeat Simple_repeat 1 43 0 554 113 0 0 chr3 70877694 70877774 -147159384 + MADE1 DNA Mariner 1 80 0 480 75 0 75 chr3 70877928 70877977 -147159181 - MADE1 DNA Mariner -1 79 37 2563 43 3 0 chr3 70877977 70878279 -147158879 + AluY SINE Alu 1 303 -8 480 75 0 75 chr3 70878279 70878309 -147158849 - MADE1 DNA Mariner -43 37 6 2041 89 4 11 chr3 70878671 70878941 -147158217 - AluSp SINE Alu -6 307 40 5238 169 49 32 chr3 70879350 70879853 -147157305 + L1MC2 LINE L1 4868 5361 -983 2210 134 0 0 chr3 70879853 70880160 -147156998 + AluSx SINE Alu 1 307 -5 5238 169 49 32 chr3 70880160 70881109 -147156049 + L1MC2 LINE L1 5361 6342 -2 273 299 76 51 chr3 70881534 70881691 -147155467 - MIR SINE MIR -101 161 1 446 255 138 14 chr3 70882101 70882246 -147154912 - L2 LINE L2 -5 3308 3146 2824 212 60 10 chr3 70882251 70882563 -147154595 - L1MD2 LINE L1 -3 6356 6061 2116 121 3 0 chr3 70882563 70882860 -147154298 - AluSx SINE Alu -14 298 1 2824 212 60 10 chr3 70882860 70883217 -147153941 - L1MD2 LINE L1 -298 6061 5654 2767 10 0 0 chr3 70883323 70883622 -147153536 - AluYa5 SINE Alu -12 299 1 5440 180 50 17 chr3 70883622 70885166 -147151992 - L1MC2 LINE L1 -13 6331 4751 2423 242 15 3 chr3 70885157 70885835 -147151323 - L1MC2 LINE L1 -2130 4016 3331 * 650 287 78 50 chr3 70885882 70886402 -147150756 - L2 LINE L2 -213 3059 2524 189 0 0 0 chr3 70887456 70887477 -147149681 + (T)n Simple_repeat Simple_repeat 1 21 0 1593 209 42 136 chr3 70887544 70888310 -147148848 - LTR8A LTR ERV1 0 727 34 277 286 162 46 chr3 70888405 70888646 -147148512 - LTR33 LTR ERVL -234 287 19 2150 136 0 0 chr3 70888726 70889020 -147148138 - AluSx SINE Alu -18 294 1 22 35 0 0 chr3 70889278 70889307 -147147851 + AT_rich Low_complexity Low_complexity 1 29 0 2216 125 0 0 chr3 70889371 70889676 -147147482 - AluY SINE Alu -6 305 1 412 300 85 0 chr3 70889904 70890034 -147147124 + MIR SINE MIR 101 241 -21 4767 150 47 38 chr3 70890395 70890781 -147146377 - L1PB4 LINE L1 -7 6149 5768 402 21 0 0 chr3 70890781 70890828 -147146330 + (TG)n Simple_repeat Simple_repeat 2 48 0 4767 150 47 38 chr3 70890828 70892014 -147145144 - L1PB4 LINE L1 -388 5768 4549 2354 79 3 0 chr3 70892014 70892305 -147144853 - AluSg SINE Alu -18 292 1 4767 150 47 38 chr3 70892305 70892626 -147144532 - L1PB4 LINE L1 -1607 4549 4233 297 51 0 0 chr3 70893119 70893158 -147144000 + (CA)n Simple_repeat Simple_repeat 2 40 0 239 111 0 22 chr3 70893399 70893444 -147143714 + (TG)n Simple_repeat Simple_repeat 1 44 0 632 260 110 82 chr3 70894613 70895130 -147142028 - L2 LINE L2 -1 3312 2782 261 297 145 22 chr3 70895220 70895358 -147141800 - MER5A DNA MER1_type -28 161 7 236 303 0 20 chr3 70895368 70895467 -147141691 - LTR67 LTR ERVL -2 555 459 2596 116 3 0 chr3 70895543 70895906 -147141252 - THE1B LTR MaLR 0 364 1 383 224 12 0 chr3 70896047 70896132 -147141026 - L2 LINE L2 -2 3270 3185 633 242 0 45 chr3 70896875 70897032 -147140126 + MIR SINE MIR 23 172 -90 255 293 27 0 chr3 70897540 70897615 -147139543 + MIR SINE MIR 165 241 -21 369 285 70 48 chr3 70897769 70897900 -147139258 - MIR SINE MIR -49 213 75 2125 132 7 0 chr3 70897900 70898196 -147138962 + AluSx SINE Alu 1 298 -14 369 285 70 48 chr3 70898196 70898250 -147138908 - MIR SINE MIR -187 75 24 226 344 70 27 chr3 70898348 70898679 -147138479 + L2 LINE L2 2617 2961 -353 224 185 44 148 chr3 70898841 70898976 -147138182 + L2 LINE L2 2922 3042 -230 644 265 24 18 chr3 70899285 70899455 -147137703 - MIR SINE MIR -12 250 80 280 304 159 20 chr3 70899461 70899662 -147137496 + L2 LINE L2 3043 3271 -1 357 333 21 21 chr3 70899783 70899924 -147137234 + MIR SINE MIR 2 142 -120 410 277 40 0 chr3 70900582 70900712 -147136446 - MER5A DNA MER1_type -15 174 31 2287 154 102 2 chr3 70901059 70901508 -147135650 - MLT1D LTR MaLR 0 505 12 741 281 45 0 chr3 70901587 70901808 -147135350 - MIR SINE MIR 0 262 32 300 337 0 10 chr3 70901982 70902080 -147135078 - L2 LINE L2 0 3272 3176 452 280 0 0 chr3 70902619 70902726 -147134432 + MIR SINE MIR 48 154 -108 1546 324 71 20 chr3 70902905 70903941 -147133217 + L2 LINE L2 2228 3313 0 243 246 0 15 chr3 70904140 70904205 -147132953 - MLT1K LTR MaLR -492 96 33 2292 80 0 35 chr3 70904209 70904520 -147132638 + AluY SINE Alu 1 300 -11 195 224 17 69 chr3 70904561 70904619 -147132539 + MIR SINE MIR 152 206 -56 192 158 0 0 chr3 70904693 70904731 -147132427 + (TA)n Simple_repeat Simple_repeat 2 39 0 607 258 73 35 chr3 70904909 70905196 -147131962 + MLT1I LTR MaLR 81 378 -31 213 39 0 0 chr3 70905203 70905229 -147131929 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 344 302 112 43 chr3 70905409 70905667 -147131491 - L2 LINE L2 -30 3283 3008 484 286 52 7 chr3 70906432 70906586 -147130572 + MIR SINE MIR 32 192 -70 213 273 91 0 chr3 70906622 70906688 -147130470 - L2 LINE L2 -2 3311 3240 253 310 252 47 chr3 70907204 70907585 -147129573 + L3 LINE CR1 184 642 -935 191 380 26 0 chr3 70907621 70907734 -147129424 - MER5A DNA MER1_type -1 188 73 386 358 28 31 chr3 70907756 70908077 -147129081 + L3 LINE CR1 674 993 -584 315 224 239 18 chr3 70909626 70909785 -147127373 - MIR SINE MIR -12 250 55 198 219 49 0 chr3 70909800 70909841 -147127317 + L2 LINE L2 3261 3303 -10 1459 195 14 21 chr3 70910246 70910565 -147126593 - AluJb SINE Alu 0 317 1 257 336 54 23 chr3 70910580 70910724 -147126434 - MIR SINE MIR -63 145 30 229 289 48 108 chr3 70910733 70911065 -147126093 - L2 LINE L2 -530 2784 2473 254 389 19 9 chr3 70911073 70911181 -147125977 + L2 LINE L2 3150 3258 -14 1676 204 45 16 chr3 70911884 70912261 -147124897 + MLT1B LTR MaLR 1 388 -2 6481 261 24 26 chr3 70913840 70917026 -147120132 + L1PA12 LINE L1 8 3466 -4118 1296 143 4 4 chr3 70917023 70917253 -147119905 - L1P LINE L1 -2071 4075 3846 * 1718 114 12 0 chr3 70917256 70917510 -147119648 + L1PA15 LINE L1 5906 6162 -3 1259 79 0 0 chr3 70917711 70917889 -147119269 - L1P LINE L1 -1214 4932 4755 6029 49 4 0 chr3 70917889 70918643 -147118515 + L1PA6 LINE L1 5398 6159 0 1196 316 42 112 chr3 70918648 70919856 -147117302 + L2 LINE L2 2180 3289 -24 259 193 18 0 chr3 70921102 70921159 -147115999 - MER113 DNA MER1_type? -72 449 392 1051 233 23 7 chr3 70921260 70921560 -147115598 - L1M4 LINE L1 -1194 5346 5042 1339 246 41 69 chr3 70921669 70922594 -147114564 - L1MDa LINE L1 -2977 3563 2665 7469 39 0 0 chr3 70922594 70923515 -147113643 - L1PA5 LINE L1 -2 6152 5232 7670 30 0 0 chr3 70923515 70924465 -147112693 + L1P LINE L1 3698 4647 -1499 2025 174 67 46 chr3 70924465 70925049 -147112109 - L1MDa LINE L1 -3862 2678 2086 2617 210 57 37 chr3 70925051 70925704 -147111454 - L1MDa LINE L1 -5844 696 31 343 259 61 57 chr3 70925737 70925949 -147111209 - L1MC5 LINE L1 -481 7480 7268 962 163 7 7 chr3 70926340 70926493 -147110665 + AluSq SINE Alu 1 153 -160 426 163 0 0 chr3 70926493 70926573 -147110585 + AluS SINE Alu 223 302 -7 562 124 8 70 chr3 70926720 70926849 -147110309 + L1MA9 LINE L1 6079 6199 -113 245 284 198 0 chr3 70927133 70927214 -147109944 + L2 LINE L2 3201 3297 -16 562 282 35 25 chr3 70927590 70927792 -147109366 - MIR SINE MIR -5 257 54 272 192 26 0 chr3 70927969 70928047 -147109111 + MER113 DNA MER1_type? 11 90 -431 758 239 55 5 chr3 70928199 70928400 -147108758 + MER113 DNA MER1_type? 311 521 0 202 196 22 22 chr3 70929085 70929131 -147108027 - MIR SINE MIR -107 155 110 258 32 0 0 chr3 70929509 70929540 -147107618 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 1014 292 16 42 chr3 70930767 70931198 -147105960 - LTR16A LTR ERVL -5 445 26 2226 100 13 26 chr3 70931285 70931462 -147105696 - AluSg SINE Alu -4 306 133 351 0 0 0 chr3 70931462 70931501 -147105657 + (TG)n Simple_repeat Simple_repeat 2 40 0 2226 100 13 26 chr3 70931501 70931633 -147105525 - AluSg SINE Alu -177 133 1 318 190 51 0 chr3 70932046 70932125 -147105033 + L1PA8 LINE L1 6087 6169 -3 625 267 92 55 chr3 70932280 70932628 -147104530 - MLT1K LTR MaLR -197 391 31 266 309 160 11 chr3 70932661 70932836 -147104322 + MIR SINE MIR 47 247 -15 262 217 87 0 chr3 70933850 70933919 -147103239 + L2 LINE L2 3232 3306 -7 447 298 68 19 chr3 70934553 70934714 -147102444 - MIR SINE MIR -87 175 7 275 353 17 17 chr3 70934712 70934828 -147102330 - MIR SINE MIR -114 148 33 * 203 256 0 105 chr3 70935410 70935496 -147101662 + MIR SINE MIR 162 238 -24 21 0 0 0 chr3 70935663 70935684 -147101474 + AT_rich Low_complexity Low_complexity 1 21 0 287 343 10 20 chr3 70936046 70936247 -147100911 - L1ME LINE L1 -352 5810 5612 289 105 0 35 chr3 70936327 70936384 -147100774 + (TTCC)n Simple_repeat Simple_repeat 2 56 0 1612 164 6 42 chr3 70936384 70936696 -147100462 - AluJo SINE Alu 0 312 12 258 341 73 32 chr3 70936916 70937039 -147100119 + L2 LINE L2 3133 3260 -12 370 330 0 17 chr3 70937049 70937164 -147099994 + MIR SINE MIR 26 138 -124 655 249 6 45 chr3 70938333 70938510 -147098648 - MIR SINE MIR -14 248 79 308 263 53 11 chr3 70938829 70938924 -147098234 + MIR SINE MIR 162 260 -2 2591 50 0 0 chr3 70939719 70940022 -147097136 + AluY SINE Alu 1 303 -8 412 316 30 38 chr3 70940558 70940691 -147096467 + MIR SINE MIR 20 151 -111 447 294 74 70 chr3 70941199 70941335 -147095823 + L3 LINE CR1 968 1102 -475 1576 134 58 31 chr3 70941335 70941627 -147095531 + AluY SINE Alu 1 300 -11 447 294 74 70 chr3 70941627 70941789 -147095369 + L3 LINE CR1 1102 1267 -310 248 270 35 26 chr3 70941804 70941919 -147095239 - LTR67 LTR ERVL -10 547 432 346 139 5 16 chr3 70942124 70942198 -147094960 - MLT1A1 LTR MaLR 0 365 300 1119 154 171 12 chr3 70942325 70942571 -147094587 - MLT1A1 LTR MaLR -80 285 1 396 291 87 87 chr3 70942641 70942998 -147094160 + MLT1H LTR MaLR 50 406 -143 2244 216 50 16 chr3 70943107 70943652 -147093506 - MLT1F1 LTR MaLR -4 563 1 315 289 45 58 chr3 70944614 70944770 -147092388 - MER117 DNA MER1_type -43 154 1 750 139 51 121 chr3 70945051 70945266 -147091892 - MER20 DNA MER1_type -19 200 1 234 193 88 0 chr3 70945574 70945631 -147091527 + L2 LINE L2 2911 2972 -341 * 279 219 164 0 chr3 70945627 70945700 -147091458 + L2 LINE L2 3229 3313 0 22 0 0 0 chr3 70946255 70946277 -147090881 + AT_rich Low_complexity Low_complexity 1 22 0 369 198 0 0 chr3 70946279 70946360 -147090798 + (CA)n Simple_repeat Simple_repeat 2 82 0 490 293 17 50 chr3 70946387 70946568 -147090590 - MIR SINE MIR -73 189 15 182 297 76 35 chr3 70946584 70946729 -147090429 - L2 LINE L2 -313 2959 2809 23 33 0 0 chr3 70947552 70947582 -147089576 + AT_rich Low_complexity Low_complexity 1 30 0 251 209 0 0 chr3 70947876 70947919 -147089239 - L2 LINE L2 -2 3311 3269 461 358 70 19 chr3 70948284 70948658 -147088500 - L2 LINE L2 -353 2961 2569 705 260 74 30 chr3 70948786 70949017 -147088141 - MIR SINE MIR -3 259 19 216 278 113 40 chr3 70949289 70949440 -147087718 - MIR SINE MIR -41 221 60 249 283 142 9 chr3 70950116 70950222 -147086936 + L2 LINE L2 3152 3271 -1 259 348 279 0 chr3 70950267 70950471 -147086687 + MIR SINE MIR 2 262 0 3166 165 0 18 chr3 70950985 70951024 -147086134 - MLT2B3 LTR ERVL 0 554 516 1214 71 4 4 chr3 70951024 70951273 -147085885 + (GAAA)n Simple_repeat Simple_repeat 1 249 0 3166 165 0 18 chr3 70951273 70951780 -147085378 - MLT2B3 LTR ERVL -38 516 8 468 216 69 9 chr3 70952530 70952646 -147084512 - MIR SINE MIR -37 225 103 966 279 117 3 chr3 70952650 70953008 -147084150 + MLT1I LTR MaLR 9 407 -2 254 235 148 25 chr3 70953040 70953121 -147084037 - L2 LINE L2 0 3272 3182 191 400 0 42 chr3 70953140 70953235 -147083923 - MIR SINE MIR -159 103 13 734 314 57 33 chr3 70953493 70954003 -147083155 + LTR67 LTR ERVL 36 557 0 933 326 78 44 chr3 70954224 70955215 -147081943 - L2 LINE L2 -3 3269 2242 354 306 84 53 chr3 70955504 70955788 -147081370 - L2 LINE L2 -339 2975 2683 243 61 0 0 chr3 70956869 70956882 -147080276 + (TA)n Simple_repeat Simple_repeat 1 46 0 243 61 0 0 chr3 70956882 70956915 -147080243 + (TA)n Simple_repeat Simple_repeat 2 34 0 1585 249 17 0 chr3 70957831 70958237 -147078921 - MER63 DNA MER1_type 0 1061 649 915 224 20 0 chr3 70958380 70958581 -147078577 - MER58A DNA MER1_type -15 209 5 21 36 0 0 chr3 70958641 70958669 -147078489 + AT_rich Low_complexity Low_complexity 1 28 0 2045 132 0 10 chr3 70959147 70959450 -147077708 + AluSx SINE Alu 13 312 0 2235 107 58 14 chr3 70959477 70959822 -147077336 - THE1B LTR MaLR 0 364 5 11561 92 10 4 chr3 70959826 70961396 -147075762 - THE1B-int LTR MaLR 0 1580 1 1980 119 79 18 chr3 70961396 70961739 -147075419 - THE1B LTR MaLR 0 364 1 307 335 36 24 chr3 70962079 70962246 -147074912 + MIR3 SINE MIR 30 198 -10 581 255 38 51 chr3 70962345 70962580 -147074578 + Charlie8 DNA MER1_type 1 232 -2185 643 281 103 44 chr3 70962873 70963745 -147073413 + L1MC4a LINE L1 4411 5334 -812 23 0 0 0 chr3 70963755 70963778 -147073380 + AT_rich Low_complexity Low_complexity 1 23 0 1752 170 7 7 chr3 70963778 70964066 -147073092 - AluJb SINE Alu -24 288 1 243 280 11 0 chr3 70964069 70964162 -147072996 + L1MC4a LINE L1 5338 5431 -739 680 220 119 30 chr3 70964163 70964465 -147072693 + L1ME1 LINE L1 5649 5945 -221 2513 199 98 13 chr3 70964465 70965068 -147072090 - MLT1E1 LTR MaLR 0 654 1 680 220 119 30 chr3 70965068 70965104 -147072054 + L1ME1 LINE L1 5945 5976 -190 703 205 13 0 chr3 70965330 70965481 -147071677 + L1MA10 LINE L1 6169 6321 -13 348 268 90 12 chr3 70965664 70965918 -147071240 + L1MC4a LINE L1 5622 5826 -336 3034 145 9 32 chr3 70966185 70966722 -147070436 - LTR45 LTR ERV1 0 525 1 1918 175 60 2 chr3 70966763 70967162 -147069996 + L1MC3 LINE L1 7358 7779 -6 363 322 176 5 chr3 70967228 70967427 -147069731 + MIR SINE MIR 30 262 0 336 268 24 8 chr3 70967958 70968081 -147069077 + L1ME4a LINE L1 5785 5909 -212 829 277 4 38 chr3 70968486 70968664 -147068494 + MIR SINE MIR 29 199 -63 2258 112 0 13 chr3 70968664 70968968 -147068190 - AluSg SINE Alu -10 300 1 829 277 4 38 chr3 70968968 70969027 -147068131 + MIR SINE MIR 199 258 -4 307 343 82 0 chr3 70969021 70969155 -147068003 - MIR SINE MIR -105 157 13 * 29 0 0 0 chr3 70969807 70969836 -147067322 + AT_rich Low_complexity Low_complexity 1 29 0 375 281 19 75 chr3 70970553 70970713 -147066445 + MER5A DNA MER1_type 17 167 -22 205 360 60 20 chr3 70971089 70971189 -147065969 - MIR SINE MIR -110 152 49 1076 263 88 56 chr3 70971388 70971910 -147065248 - MLT1H LTR MaLR -10 539 1 315 0 0 0 chr3 70973249 70973284 -147063874 + (CA)n Simple_repeat Simple_repeat 2 36 0 302 373 135 0 chr3 70973599 70973784 -147063374 + MIR SINE MIR 47 256 -6 256 238 9 105 chr3 70973800 70973905 -147063253 - L2 LINE L2 -229 3043 2949 249 287 92 52 chr3 70974430 70974604 -147062554 - L2 LINE L2 -234 3038 2858 810 249 70 0 chr3 70974936 70975177 -147061981 + LTR16C LTR ERVL 200 457 -34 271 204 0 0 chr3 70975393 70975447 -147061711 + MIR SINE MIR 179 232 -30 357 284 7 61 chr3 70975796 70975944 -147061214 - MER5A DNA MER1_type -36 153 14 229 290 11 5 chr3 70977268 70977353 -147059805 - MIR SINE MIR -63 145 69 519 372 5 0 chr3 70978033 70978240 -147058918 + MIR SINE MIR 7 214 -48 251 209 0 0 chr3 70978917 70978960 -147058198 + L2 LINE L2 3269 3311 -2 23 33 0 0 chr3 70979254 70979284 -147057874 + AT_rich Low_complexity Low_complexity 1 30 0 278 264 0 94 chr3 70980715 70980821 -147056337 + L2 LINE L2 3172 3267 -5 2377 47 10 0 chr3 70980927 70981224 -147055934 - L1PA4 LINE L1 -1 6154 5855 2253 110 10 0 chr3 70981608 70981916 -147055242 - AluSx SINE Alu -1 311 1 361 266 0 8 chr3 70982166 70982290 -147054868 - LTR33 LTR ERVL 0 521 399 337 197 31 24 chr3 70982306 70982433 -147054725 + GA-rich Low_complexity Low_complexity 4 131 0 832 252 90 17 chr3 70982436 70982726 -147054432 - LTR33 LTR ERVL -210 311 1 277 333 86 0 chr3 70982792 70982897 -147054261 - L2 LINE L2 -6 3266 3153 21 36 0 0 chr3 70983085 70983113 -147054045 + AT_rich Low_complexity Low_complexity 1 28 0 278 176 0 0 chr3 70983117 70983168 -147053990 - FLAM_A SINE Alu -16 117 67 244 289 40 26 chr3 70984393 70984469 -147052689 - MIR SINE MIR -63 145 69 400 299 14 12 chr3 70984999 70985138 -147052020 + MIR SINE MIR 23 159 -65 218 280 0 0 chr3 70986160 70986210 -147050948 + (TTCA)n Simple_repeat Simple_repeat 2 51 0 258 343 128 0 chr3 70986217 70986319 -147050839 - L2 LINE L2 -22 3250 3136 388 262 19 19 chr3 70986371 70986478 -147050680 - MIR SINE MIR 0 262 156 582 321 62 17 chr3 70986595 70986835 -147050323 - MIR SINE MIR -11 251 1 620 227 160 0 chr3 70987033 70987183 -147049975 + MER5A DNA MER1_type 10 183 -6 215 234 26 78 chr3 70987391 70987468 -147049690 + MER5A DNA MER1_type 1 73 -116 342 231 56 37 chr3 70987690 70987807 -147049351 + MIR SINE MIR 30 148 -60 354 282 0 0 chr3 70988074 70988152 -147049006 - L2 LINE L2 0 3313 3236 279 0 0 0 chr3 70988783 70988814 -147048344 + (ATGTG)n Simple_repeat Simple_repeat 4 34 0 279 0 0 0 chr3 70989787 70989818 -147047340 + (TG)n Simple_repeat Simple_repeat 1 31 0 2102 131 47 33 chr3 70989920 70990279 -147046879 - THE1B LTR MaLR 0 364 1 253 246 46 31 chr3 70990281 70990346 -147046812 + L2 LINE L2 3246 3311 -2 770 302 87 40 chr3 70990632 70991304 -147045854 - L2 LINE L2 0 3313 2564 268 397 0 7 chr3 70991416 70991567 -147045591 - MIR3 SINE MIR -24 184 35 615 329 53 16 chr3 70991783 70992029 -147045129 + MIR SINE MIR 8 262 0 186 271 0 21 chr3 70992262 70992310 -147044848 - L2 LINE L2 0 3313 3267 325 218 209 0 chr3 70992656 70992775 -147044383 - MIR SINE MIR -65 143 32 207 0 0 0 chr3 70992904 70992927 -147044231 + (TG)n Simple_repeat Simple_repeat 1 23 0 308 181 12 0 chr3 70992934 70993017 -147044141 + GA-rich Low_complexity Low_complexity 1 84 0 188 33 0 33 chr3 70995693 70995723 -147041435 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 32 0 0 0 chr3 70995826 70995858 -147041300 + AT_rich Low_complexity Low_complexity 1 32 0 815 264 53 6 chr3 70996310 70996549 -147040609 - MIR SINE MIR -12 250 2 21 0 0 0 chr3 70997020 70997041 -147040117 + AT_rich Low_complexity Low_complexity 1 21 0 1989 144 0 0 chr3 70998736 70999041 -147038117 - AluSx SINE Alu 0 305 1 494 274 19 0 chr3 70999410 70999516 -147037642 - L2 LINE L2 -5 3267 3160 346 303 57 16 chr3 70999992 71000114 -147037044 - L2 LINE L2 0 3313 3187 971 158 0 46 chr3 71000115 71000311 -147036847 - MER20 DNA MER1_type 0 219 33 340 323 48 32 chr3 71000551 71000740 -147036418 - MIR SINE MIR -65 197 6 376 374 32 16 chr3 71001039 71001229 -147035929 - MIR SINE MIR -57 205 13 24 0 0 0 chr3 71001883 71001907 -147035251 + AT_rich Low_complexity Low_complexity 1 24 0 1505 261 65 11 chr3 71002768 71003232 -147033926 - MLT1H LTR MaLR 0 549 61 711 305 116 42 chr3 71004405 71004939 -147032219 + L2 LINE L2 2456 3025 -247 198 0 0 0 chr3 71005103 71005125 -147032033 + (A)n Simple_repeat Simple_repeat 1 22 0 529 347 54 28 chr3 71005183 71005572 -147031586 - L2 LINE L2 -469 2845 2447 529 281 95 22 chr3 71006226 71006457 -147030701 + MIR SINE MIR 15 262 0 21 36 0 0 chr3 71006460 71006488 -147030670 + AT_rich Low_complexity Low_complexity 1 28 0 215 329 160 25 chr3 71006544 71006863 -147030295 + L2 LINE L2 2820 3181 -132 190 260 20 0 chr3 71006890 71006940 -147030218 + L2 LINE L2 3248 3298 -15 22 35 0 0 chr3 71010051 71010080 -147027078 + AT_rich Low_complexity Low_complexity 1 29 0 840 189 86 127 chr3 71010309 71010503 -147026655 - L1MC5 LINE L1 -236 7725 7525 2154 103 3 6 chr3 71010503 71010815 -147026343 - L1PA13 LINE L1 0 6163 5853 840 189 86 127 chr3 71010815 71011194 -147025964 - L1MC5 LINE L1 -436 7525 7178 1214 205 112 35 chr3 71011194 71011541 -147025617 - MLT1A2 LTR MaLR 0 374 1 840 189 86 127 chr3 71011541 71011594 -147025564 - L1MC5 LINE L1 -783 7178 7124 237 65 0 0 chr3 71011594 71011625 -147025533 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 996 183 0 82 chr3 71011628 71011847 -147025311 - AluJb SINE Alu -26 286 86 450 274 42 0 chr3 71011847 71012015 -147025143 - L1MC5 LINE L1 -826 7135 6961 621 292 24 0 chr3 71012068 71012236 -147024922 + MIR SINE MIR 78 249 -13 2234 100 20 0 chr3 71012521 71012821 -147024337 + AluSp SINE Alu 1 306 -7 216 0 0 0 chr3 71013095 71013119 -147024039 + (CA)n Simple_repeat Simple_repeat 1 24 0 1689 170 22 0 chr3 71013134 71013433 -147023725 + AluSx SINE Alu 8 312 0 24 0 0 0 chr3 71013669 71013693 -147023465 + AT_rich Low_complexity Low_complexity 1 24 0 342 320 109 40 chr3 71014623 71014998 -147022160 - L1ME4a LINE L1 -5 6116 5716 232 278 22 22 chr3 71015468 71015558 -147021600 + MLT1J LTR MaLR 403 492 -19 398 225 108 39 chr3 71016893 71017022 -147020136 + MIR SINE MIR 60 197 -65 202 200 40 0 chr3 71017064 71017114 -147020044 + (TTA)n Simple_repeat Simple_repeat 2 53 0 497 266 29 0 chr3 71017434 71017573 -147019585 - MER58B DNA MER1_type -6 335 193 334 345 46 67 chr3 71017695 71017979 -147019179 + L2 LINE L2 2900 3177 -95 252 0 0 0 chr3 71017986 71018014 -147019144 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 368 307 86 7 chr3 71018027 71018167 -147018991 - L2 LINE L2 -9 3304 3154 614 301 107 37 chr3 71018445 71018904 -147018254 - LTR16C LTR ERVL 0 491 1 189 195 0 0 chr3 71018919 71018960 -147018198 + (TGAG)n Simple_repeat Simple_repeat 3 43 0 458 278 9 0 chr3 71019051 71019166 -147017992 - MER63A DNA MER1_type -44 166 51 302 224 12 0 chr3 71020518 71020603 -147016555 + GA-rich Low_complexity Low_complexity 1 86 0 904 124 0 40 chr3 71020604 71020930 -147016228 + (GGAA)n Simple_repeat Simple_repeat 1 312 0 233 242 73 107 chr3 71021291 71021469 -147015689 + L2 LINE L2 3137 3308 -5 411 222 103 17 chr3 71021479 71021596 -147015562 - MIR SINE MIR -62 146 20 2439 160 104 58 chr3 71021929 71022516 -147014642 - LTR18B LTR ERVL 0 614 1 213 366 11 0 chr3 71022964 71023057 -147014101 + MIR SINE MIR 157 250 -12 267 321 49 0 chr3 71023198 71023279 -147013879 - MIR SINE MIR -70 192 108 365 263 0 0 chr3 71023776 71023871 -147013287 - MIR SINE MIR 0 262 168 252 86 0 0 chr3 71023939 71023974 -147013184 + (CA)n Simple_repeat Simple_repeat 1 35 0 284 254 17 0 chr3 71024266 71024325 -147012833 - MIR SINE MIR -119 143 84 243 272 26 18 chr3 71024917 71025031 -147012127 - L1ME4a LINE L1 -46 6075 5961 222 208 0 0 chr3 71025936 71025984 -147011174 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 557 301 25 60 chr3 71027446 71027765 -147009393 + L1ME4a LINE L1 5466 5773 -2035 319 290 50 85 chr3 71027861 71028120 -147009038 + L1ME4a LINE L1 5869 6118 -3 348 299 88 15 chr3 71029100 71029237 -147007921 - MIR SINE MIR -10 252 106 258 361 79 8 chr3 71029442 71029683 -147007475 - L2 LINE L2 -883 2431 2174 309 65 0 0 chr3 71029823 71029869 -147007289 + L1PA8 LINE L1 6123 6168 -4 22 0 0 0 chr3 71029872 71029894 -147007264 + AT_rich Low_complexity Low_complexity 1 22 0 1435 148 0 0 chr3 71030515 71030711 -147006447 - AluSx SINE Alu -116 196 1 1198 282 49 5 chr3 71030732 71031101 -147006057 + LTR16C LTR ERVL 107 491 0 205 254 0 0 chr3 71031136 71031191 -147005967 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 671 281 66 15 chr3 71031735 71031931 -147005227 + MIR SINE MIR 23 228 -34 457 307 7 0 chr3 71033036 71033173 -147003985 + MIR SINE MIR 105 242 -20 970 289 84 14 chr3 71033528 71033895 -147003263 - LTR16C LTR ERVL 0 491 99 279 352 0 64 chr3 71034065 71034190 -147002968 - L2 LINE L2 -20 3252 3136 216 214 0 0 chr3 71034203 71034245 -147002913 + (TA)n Simple_repeat Simple_repeat 2 43 0 740 316 66 15 chr3 71034491 71035059 -147002099 - L2 LINE L2 -161 3152 2549 2034 129 3 13 chr3 71035251 71035554 -147001604 - AluSx SINE Alu -1 311 12 225 271 35 24 chr3 71035749 71035834 -147001324 - LTR33A LTR ERVL -3 520 435 311 239 0 0 chr3 71035947 71036014 -147001144 + MER58 DNA MER1_type 35 101 -114 2107 121 7 0 chr3 71036034 71036323 -147000835 - AluSx SINE Alu -21 291 1 394 169 0 36 chr3 71036342 71036425 -147000733 + MER58 DNA MER1_type 2317 2396 -24 514 281 99 32 chr3 71036449 71036762 -147000396 - LTR33A LTR ERVL -168 355 22 216 298 88 0 chr3 71036794 71036851 -147000307 + MIR3 SINE MIR 109 170 -38 293 239 49 103 chr3 71038007 71038035 -146999123 + MER5A DNA MER1_type 38 66 -123 2215 105 10 13 chr3 71038035 71038340 -146998818 + AluSx SINE Alu 1 304 -8 293 239 49 103 chr3 71038340 71038461 -146998697 + MER5A DNA MER1_type 66 189 0 954 106 0 0 chr3 71038896 71039037 -146998121 + (TA)n Simple_repeat Simple_repeat 1 141 0 207 186 0 0 chr3 71039044 71039087 -146998071 + (CAT)n Simple_repeat Simple_repeat 2 44 0 704 269 29 29 chr3 71039098 71039340 -146997818 - MIR SINE MIR -16 246 5 1895 179 20 31 chr3 71040242 71040634 -146996524 + L1MC1 LINE L1 5942 6329 -4 31 82 0 0 chr3 71040762 71040835 -146996323 + AT_rich Low_complexity Low_complexity 1 73 0 349 227 25 50 chr3 71040896 71041015 -146996143 - L1MC/D LINE L1 -2016 5792 5677 446 259 92 0 chr3 71041024 71041155 -146996003 - L1MC/D LINE L1 -495 5626 5484 188 300 62 38 chr3 71041386 71041466 -146995692 - L2 LINE L2 -39 3274 3193 842 285 114 49 chr3 71042786 71043334 -146993824 - L2 LINE L2 -1 3312 2681 884 144 0 0 chr3 71043334 71043466 -146993692 + FLAM_C SINE Alu 1 132 -1 842 285 114 49 chr3 71043466 71043855 -146993303 - L2 LINE L2 -632 2681 2319 208 339 16 0 chr3 71044354 71044416 -146992742 - L2 LINE L2 -87 3185 3123 25 31 0 0 chr3 71044490 71044522 -146992636 + AT_rich Low_complexity Low_complexity 1 32 0 311 151 35 47 chr3 71044623 71044709 -146992449 + MER113 DNA MER1_type? 39 123 -398 188 389 102 25 chr3 71044872 71045029 -146992129 + MIR SINE MIR 48 216 -46 461 287 53 16 chr3 71045401 71045589 -146991569 + MIR SINE MIR 68 262 0 234 167 0 0 chr3 71045663 71045699 -146991459 + MIR SINE MIR 156 191 -71 1633 190 0 43 chr3 71045699 71046069 -146991089 + AluJb SINE Alu 1 356 0 201 222 0 0 chr3 71046079 71046115 -146991043 + L2 LINE L2 3261 3296 -17 1298 139 46 50 chr3 71046413 71046716 -146990442 + MER33 DNA MER1_type 23 324 0 3174 168 29 47 chr3 71046730 71047939 -146989219 - L1MC1 LINE L1 -8 6325 5169 27 62 0 0 chr3 71048358 71048406 -146988752 + AT_rich Low_complexity Low_complexity 1 48 0 22 56 0 0 chr3 71048601 71048637 -146988521 + AT_rich Low_complexity Low_complexity 1 36 0 25 0 0 0 chr3 71049154 71049179 -146987979 + AT_rich Low_complexity Low_complexity 1 25 0 271 217 296 0 chr3 71049600 71049715 -146987443 - MIR SINE MIR -12 250 102 297 232 0 0 chr3 71049716 71049785 -146987373 - MER116 DNA Mariner 0 80 12 200 329 14 43 chr3 71049805 71049875 -146987283 - MIR SINE MIR -163 99 32 339 206 9 19 chr3 71050578 71050685 -146986473 + CT-rich Low_complexity Low_complexity 2 107 0 474 229 9 0 chr3 71051049 71051154 -146986004 - MER103 DNA DNA -58 108 3 918 120 0 0 chr3 71051546 71051679 -146985479 + AluSg/x SINE Alu 180 312 0 265 229 95 9 chr3 71051692 71051797 -146985361 + L1MC4a LINE L1 7131 7244 -564 810 165 15 198 chr3 71051803 71052203 -146984955 + L1MC4a LINE L1 7339 7665 -143 236 226 107 0 chr3 71052212 71052296 -146984862 + L1MD3 LINE L1 7893 7985 -10 878 180 146 48 chr3 71052358 71052653 -146984505 - MER33 DNA MER1_type 0 324 1 308 193 198 99 chr3 71052743 71052935 -146984223 - L2 LINE L2 -1 3312 3102 219 218 0 0 chr3 71053606 71053661 -146983497 + (TA)n Simple_repeat Simple_repeat 1 55 0 257 286 0 6 chr3 71053694 71053865 -146983293 + (TA)n Simple_repeat Simple_repeat 1 170 0 237 169 14 28 chr3 71054426 71054497 -146982661 + CT-rich Low_complexity Low_complexity 4 73 0 233 119 24 0 chr3 71055418 71055460 -146981698 + (TG)n Simple_repeat Simple_repeat 2 44 0 422 302 62 22 chr3 71055462 71055641 -146981517 + MER5A DNA MER1_type 1 186 -3 * 425 304 12 48 chr3 71055487 71055655 -146981503 - MER5A DNA MER1_type -22 167 6 342 222 75 104 chr3 71056561 71056773 -146980385 - MLT1K LTR MaLR -5 583 378 1589 177 57 91 chr3 71056875 71057371 -146979787 + MLT1D LTR MaLR 26 504 -1 21 36 0 0 chr3 71058604 71058632 -146978526 + AT_rich Low_complexity Low_complexity 1 28 0 367 234 52 94 chr3 71058672 71058864 -146978294 - L1MC/D LINE L1 -2030 5778 5595 375 254 87 14 chr3 71059983 71060121 -146977037 + MIR SINE MIR 103 250 -12 191 415 37 0 chr3 71060596 71060678 -146976480 - L2 LINE L2 -87 3185 3101 186 290 130 14 chr3 71061328 71061397 -146975761 + MIR SINE MIR 47 123 -139 417 273 45 23 chr3 71061399 71061531 -146975627 - MIR SINE MIR -10 252 118 768 127 8 8 chr3 71061546 71061680 -146975478 + L1P4 LINE L1 5622 5755 -410 * 1741 141 10 0 chr3 71061669 71061967 -146975191 - L1P LINE L1 -2161 3985 3685 399 314 64 0 chr3 71061990 71062146 -146975012 + MIR SINE MIR 31 196 -66 348 215 66 106 chr3 71062562 71062864 -146974294 - L1ME4a LINE L1 -16 6105 5816 2485 71 0 0 chr3 71063133 71063427 -146973731 + AluSg SINE Alu 1 294 -16 215 284 15 30 chr3 71063479 71063546 -146973612 - MIR SINE MIR -176 86 21 255 285 117 62 chr3 71063835 71064014 -146973144 + MER5A DNA MER1_type 1 189 0 579 268 0 7 chr3 71064092 71064234 -146972924 - MIR SINE MIR -10 252 112 455 174 28 18 chr3 71064414 71064523 -146972635 - LTR33 LTR ERVL -1 520 411 615 172 32 25 chr3 71064559 71064716 -146972442 - LTR33 LTR ERVL -345 176 19 257 341 16 8 chr3 71064716 71064842 -146972316 + MIR SINE MIR 93 219 -43 191 323 31 31 chr3 71064930 71065026 -146972132 + MIR SINE MIR 59 154 -108 627 292 141 20 chr3 71065377 71065768 -146971390 - L2 LINE L2 -353 2961 2524 290 208 28 0 chr3 71065914 71065986 -146971172 + LTR33 LTR ERVL 2 75 -446 381 43 0 0 chr3 71067074 71067121 -146970037 + (TG)n Simple_repeat Simple_repeat 1 47 0 252 0 0 0 chr3 71067120 71067148 -146970010 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 580 253 28 28 chr3 71067530 71067708 -146969450 + MER5B DNA MER1_type 1 178 0 1584 155 116 69 chr3 71068058 71068465 -146968693 - MSTB1 LTR MaLR -2 430 5 485 316 6 19 chr3 71068605 71068763 -146968395 + L2 LINE L2 3154 3309 -4 690 266 30 0 chr3 71068763 71069000 -146968158 - MER113 DNA MER1_type? -276 245 2 378 326 128 28 chr3 71069096 71069415 -146967743 - L2 LINE L2 -8 3264 2914 475 228 19 25 chr3 71070503 71070661 -146966497 + MER103 DNA DNA 9 165 -1 1162 182 127 65 chr3 71071389 71071713 -146965445 + MER2 DNA MER2_type 1 344 0 673 276 102 51 chr3 71072082 71072375 -146964783 + MER45C DNA AcHobo 496 803 -150 399 182 0 13 chr3 71072429 71072506 -146964652 + MER45C DNA AcHobo 878 953 0 227 297 14 97 chr3 71072688 71072833 -146964325 + MIR SINE MIR 126 258 -4 225 188 282 0 chr3 71072905 71072990 -146964168 - MER5A DNA MER1_type -77 112 4 1669 241 41 26 chr3 71073440 71073900 -146963258 - MLT1C LTR MaLR 0 467 1 686 272 68 5 chr3 71074485 71074676 -146962482 + MIR SINE MIR 60 262 0 191 152 22 0 chr3 71075261 71075307 -146961851 + (TA)n Simple_repeat Simple_repeat 1 47 0 240 244 0 26 chr3 71075379 71075457 -146961701 + L1MC4 LINE L1 6621 6696 -1346 22 0 0 0 chr3 71075624 71075646 -146961512 + AT_rich Low_complexity Low_complexity 1 22 0 224 306 51 66 chr3 71075852 71076048 -146961110 + L2 LINE L2 2763 2955 -359 3090 149 14 22 chr3 71076049 71076695 -146960463 - L1MB8 LINE L1 0 6178 5429 197 367 33 11 chr3 71076695 71076785 -146960373 + L2 LINE L2 2968 3059 -213 199 313 0 60 chr3 71076826 71076909 -146960249 + L2 LINE L2 3142 3219 -53 2184 102 0 0 chr3 71076909 71077237 -146959921 - AluSq SINE Alu 0 328 1 491 292 17 8 chr3 71077629 71077749 -146959409 - MER5A DNA MER1_type -62 127 7 350 294 78 0 chr3 71077806 71077908 -146959250 + MIR SINE MIR 18 127 -135 5128 170 51 12 chr3 71078008 71078751 -146958407 - L1PA16 LINE L1 0 6166 5454 2467 71 3 3 chr3 71078751 71079061 -146958097 - AluSp SINE Alu -3 310 1 5128 170 51 12 chr3 71079061 71080277 -146956881 - L1PA16 LINE L1 -712 5454 4124 813 305 78 55 chr3 71080738 71081312 -146955846 - L2 LINE L2 0 3313 2707 526 292 66 17 chr3 71082285 71082573 -146954585 + Charlie2 DNA MER1_type 24 325 -2537 2206 229 77 30 chr3 71082575 71082918 -146954240 + Charlie2 DNA MER1_type 1856 2181 -681 1502 199 124 31 chr3 71082918 71083336 -146953822 + MSTB2 LTR MaLR 1 457 0 2206 229 77 30 chr3 71083336 71083372 -146953786 + Charlie2 DNA MER1_type 2181 2214 -648 1645 190 23 16 chr3 71083372 71083677 -146953481 - AluJb SINE Alu -5 307 1 2206 229 77 30 chr3 71083677 71084106 -146953052 + Charlie2 DNA MER1_type 2214 2719 -143 1753 160 6 35 chr3 71084106 71084418 -146952740 - AluJb SINE Alu -9 303 1 2206 229 77 30 chr3 71084418 71084552 -146952606 + Charlie2 DNA MER1_type 2719 2845 -17 259 332 130 34 chr3 71085940 71086202 -146950956 + L2 LINE L2 3026 3312 -1 223 257 54 0 chr3 71087487 71087561 -146949597 - MIR SINE MIR -15 247 170 1682 177 40 54 chr3 71087561 71087990 -146949168 - MSTB1 LTR MaLR 0 432 10 351 223 160 11 chr3 71087999 71088093 -146949065 - MIR SINE MIR -89 173 66 1834 192 11 25 chr3 71088529 71088967 -146948191 + L1MB7 LINE L1 4756 5187 -959 831 158 0 29 chr3 71088967 71089106 -146948052 + AluJb SINE Alu 1 135 -177 3831 164 57 45 chr3 71089125 71090139 -146947019 + L1MB7 LINE L1 5158 6184 0 416 287 75 120 chr3 71090188 71090589 -146946569 + L2 LINE L2 2890 3272 0 224 258 0 32 chr3 71091211 71091273 -146945885 - L2 LINE L2 -74 3239 3180 502 253 47 61 chr3 71091423 71091837 -146945321 + MLT1I LTR MaLR 23 549 0 1049 314 26 8 chr3 71092606 71092994 -146944164 - LTR16C LTR ERVL 0 491 97 391 229 27 179 chr3 71093082 71093383 -146943775 - MIR SINE MIR -1 261 7 404 105 13 0 chr3 71093875 71093951 -146943207 + (CA)n Simple_repeat Simple_repeat 2 78 0 362 322 169 12 chr3 71093953 71094195 -146942963 + MLT1K LTR MaLR 150 429 -159 329 211 56 0 chr3 71095066 71095137 -146942021 - L2 LINE L2 -10 3262 3188 223 367 0 0 chr3 71095738 71095798 -146941360 + L2 LINE L2 3208 3267 -5 558 199 14 7 chr3 71095916 71096057 -146941101 - Charlie1 DNA MER1_type 0 2761 2620 * 786 254 10 5 chr3 71096046 71096243 -146940915 - Charlie1 DNA MER1_type -2529 232 35 186 43 0 0 chr3 71096512 71096535 -146940623 + (TTTTTG)n Simple_repeat Simple_repeat 1 23 0 417 333 29 25 chr3 71096928 71097132 -146940026 - L2 LINE L2 -445 2869 2665 411 231 21 91 chr3 71097840 71097983 -146939175 - MIR SINE MIR -65 197 65 567 62 111 0 chr3 71098423 71098504 -146938654 + 5S rRNA rRNA 1 90 -31 229 316 50 58 chr3 71100799 71100938 -146936220 + MIR SINE MIR 122 259 -3 249 217 101 14 chr3 71101097 71101166 -146935992 + L2 LINE L2 3198 3272 0 690 159 0 66 chr3 71102017 71102154 -146935004 - L1M3 LINE L1 -749 5431 5307 2322 101 0 0 chr3 71102154 71102460 -146934698 - AluSc SINE Alu -3 306 1 690 159 0 66 chr3 71102460 71102504 -146934654 - L1M3 LINE L1 -873 5307 5262 238 269 51 0 chr3 71102523 71102601 -146934557 - MIR SINE MIR -67 195 114 998 265 21 49 chr3 71102623 71103012 -146934146 - L2 LINE L2 0 3313 2936 3999 196 73 26 chr3 71103109 71103277 -146933881 - L1MD1 LINE L1 -4 6632 6473 2171 100 0 35 chr3 71103277 71103587 -146933571 + AluSq SINE Alu 2 300 -13 3999 196 73 26 chr3 71103587 71104611 -146932547 - L1MD1 LINE L1 -163 6473 5346 1960 118 64 10 chr3 71104611 71104907 -146932251 + AluSx SINE Alu 1 312 0 3999 196 73 26 chr3 71104907 71105266 -146931892 - L1MD1 LINE L1 -1290 5346 5005 1224 188 4 0 chr3 71105273 71105512 -146931646 - L1P LINE L1 -1052 5094 4855 2850 94 12 0 chr3 71105512 71105910 -146931248 + L1PA13 LINE L1 5752 6162 -1 4873 207 100 27 chr3 71105957 71106101 -146931057 - L1MD1 LINE L1 -4427 2113 1981 2059 128 56 17 chr3 71106101 71106459 -146930699 - THE1C LTR MaLR -3 372 1 4873 207 100 27 chr3 71106459 71108207 -146928951 - L1MD1 LINE L1 -4559 1981 3 488 16 16 0 chr3 71108427 71108488 -146928670 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 1596 116 0 33 chr3 71108613 71108888 -146928270 + L1PA16 LINE L1 5901 6166 0 905 138 0 6 chr3 71111261 71111421 -146925737 + (TTCC)n Simple_repeat Simple_repeat 2 160 0 375 121 0 0 chr3 71111524 71111582 -146925576 + (TCCC)n Simple_repeat Simple_repeat 4 61 0 1171 93 0 11 chr3 71111593 71111775 -146925383 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 830 277 175 25 chr3 71111799 71112193 -146924965 - L2 LINE L2 -2 3311 2859 201 324 68 0 chr3 71112446 71112520 -146924638 - L2 LINE L2 -822 2492 2414 182 296 0 0 chr3 71112759 71112803 -146924355 - L2 LINE L2 -43 3229 3186 254 244 0 115 chr3 71112959 71113037 -146924121 - L2 LINE L2 -299 2973 2906 386 278 98 72 chr3 71113108 71113414 -146923744 - MER102b DNA MER1_type 0 341 28 923 224 20 0 chr3 71113680 71113881 -146923277 - MER3 DNA MER1_type -4 205 1 223 373 34 25 chr3 71113881 71113999 -146923159 + L2 LINE L2 3189 3307 -6 766 278 5 11 chr3 71114518 71114705 -146922453 - MIR SINE MIR -70 192 7 370 243 28 19 chr3 71114703 71114810 -146922348 + MIR SINE MIR 75 182 -80 * 551 284 62 53 chr3 71114865 71115057 -146922101 + L1MC/D LINE L1 5373 5571 -2237 1445 214 43 51 chr3 71115057 71115450 -146921708 - MLT1B LTR MaLR 0 390 1 551 284 62 53 chr3 71115450 71115612 -146921546 + L1MC/D LINE L1 5571 5730 -2078 922 227 103 0 chr3 71115654 71115857 -146921301 - MER58A DNA MER1_type 0 224 1 180 111 0 0 chr3 71115874 71115901 -146921257 + (TATATG)n Simple_repeat Simple_repeat 2 28 0 276 30 0 0 chr3 71115901 71115934 -146921224 + (CA)n Simple_repeat Simple_repeat 2 34 0 279 0 0 0 chr3 71116051 71116082 -146921076 + (CA)n Simple_repeat Simple_repeat 2 32 0 716 289 61 0 chr3 71116148 71116365 -146920793 - MIR SINE MIR -10 252 22 613 198 120 42 chr3 71116448 71116665 -146920493 - MER106A DNA MER1_type 0 236 3 1953 142 0 7 chr3 71117513 71117808 -146919350 + AluSx SINE Alu 5 297 -15 634 229 29 35 chr3 71118510 71118680 -146918478 - L2 LINE L2 -4 3309 3141 205 308 108 0 chr3 71118690 71118755 -146918403 + L2 LINE L2 3141 3212 -60 22 99 0 0 chr3 71119034 71119105 -146918053 + AT_rich Low_complexity Low_complexity 1 71 0 1048 232 75 55 chr3 71119123 71119507 -146917651 + MLT1D LTR MaLR 1 392 -113 215 290 108 21 chr3 71119515 71119608 -146917550 - MIR SINE MIR -75 133 33 508 301 35 43 chr3 71120900 71121156 -146916002 + MIR SINE MIR 7 260 -2 541 246 127 0 chr3 71121199 71121341 -146915817 + MIR SINE MIR 100 259 -3 189 0 0 0 chr3 71121451 71121472 -146915686 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 751 323 70 13 chr3 71121532 71121919 -146915239 + LTR16C LTR ERVL 1 409 -82 219 264 44 33 chr3 71121978 71122069 -146915089 + MIR SINE MIR 138 229 -33 364 194 0 0 chr3 71122331 71122393 -146914765 + L2 LINE L2 3248 3309 -4 424 232 36 0 chr3 71122427 71122539 -146914619 - L1MD2 LINE L1 -40 6319 6204 539 331 104 29 chr3 71122539 71123051 -146914107 + L2 LINE L2 2689 3241 -72 2607 188 67 91 chr3 71123088 71123178 -146913980 + L1PA8 LINE L1 5428 5519 -653 1879 160 3 6 chr3 71123178 71123491 -146913667 + AluSx SINE Alu 1 312 0 2607 188 67 91 chr3 71123491 71124159 -146912999 + L1PA8 LINE L1 5519 6168 -4 420 312 82 47 chr3 71124621 71124986 -146912172 + LTR16C LTR ERVL 112 489 -2 432 311 40 0 chr3 71124986 71125134 -146912024 - MIR SINE MIR -20 242 89 182 283 50 0 chr3 71125287 71125347 -146911811 - MIR SINE MIR -184 78 16 2324 73 0 0 chr3 71125479 71125766 -146911392 + AluY SINE Alu 13 299 -12 336 344 127 27 chr3 71126202 71126770 -146910388 + L2 LINE L2 2645 3271 -1 460 323 147 5 chr3 71128753 71128951 -146908207 - MIR SINE MIR -3 259 34 342 178 267 44 chr3 71129063 71129198 -146907960 - MER113 DNA MER1_type? -304 217 53 317 288 43 71 chr3 71129940 71130124 -146907034 + MIR SINE MIR 72 250 -12 261 0 0 0 chr3 71130181 71130210 -146906948 + (T)n Simple_repeat Simple_repeat 1 29 0 201 318 12 47 chr3 71130374 71130459 -146906699 - L2 LINE L2 -17 3255 3174 1271 145 8 60 chr3 71130624 71130859 -146906299 + AluJo SINE Alu 88 310 -2 423 163 0 0 chr3 71130871 71130951 -146906207 + GA-rich Low_complexity Low_complexity 5 84 0 422 313 14 14 chr3 71131542 71131689 -146905469 - MIR SINE MIR -11 251 105 272 206 0 16 chr3 71132772 71132835 -146904323 + MLT1K LTR MaLR 525 586 -2 2160 115 0 10 chr3 71133892 71134196 -146902962 - AluSx SINE Alu -11 301 1 730 271 64 40 chr3 71134889 71135140 -146902018 - MIR SINE MIR 0 262 6 240 111 0 0 chr3 71135198 71135234 -146901924 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 473 224 214 20 chr3 71135314 71135510 -146901648 - MIR SINE MIR 0 262 29 873 265 24 0 chr3 71136837 71137048 -146900110 - MIR SINE MIR -10 252 37 1590 190 3 30 chr3 71137112 71137407 -146899751 + AluJo SINE Alu 23 309 -3 21 0 0 0 chr3 71137423 71137444 -146899714 + AT_rich Low_complexity Low_complexity 1 21 0 753 298 13 13 chr3 71137601 71137836 -146899322 + MIR SINE MIR 17 251 -11 627 325 162 8 chr3 71137944 71138326 -146898832 + L2 LINE L2 2870 3310 -3 265 165 3 0 chr3 71138394 71138447 -146898711 + L2 LINE L2 2930 2981 -291 623 311 192 9 chr3 71138465 71138803 -146898355 + L2 LINE L2 2914 3313 0 12109 195 27 17 chr3 71139124 71142476 -146894682 + L1PA15 LINE L1 2795 6163 -2 2376 88 3 3 chr3 71142524 71142830 -146894328 - AluSp SINE Alu -7 306 1 1981 133 21 44 chr3 71142936 71143320 -146893838 - THE1C LTR MaLR 0 375 1 516 290 27 0 chr3 71143348 71143534 -146893624 - LTR33 LTR ERVL -305 216 26 512 179 172 8 chr3 71143586 71143720 -146893438 - MIR SINE MIR -13 249 94 616 232 139 55 chr3 71143827 71144163 -146892995 + MER113 DNA MER1_type? 4 372 -149 3250 147 71 33 chr3 71144163 71144741 -146892417 - MER7C DNA MER2_type -2 600 1 616 232 139 55 chr3 71144741 71144826 -146892332 + MER113 DNA MER1_type? 372 448 -73 210 203 27 81 chr3 71145161 71145235 -146891923 - MIR SINE MIR -62 146 84 850 256 51 54 chr3 71146231 71146602 -146890556 - MER113 DNA MER1_type? -65 456 87 1099 164 57 79 chr3 71146644 71146961 -146890197 - MER33 DNA MER1_type -14 310 1 323 252 9 30 chr3 71147402 71147644 -146889514 + GA-rich Low_complexity Low_complexity 1 236 0 1068 57 0 0 chr3 71147695 71147819 -146889339 + L1PA3 LINE L1 6023 6146 -9 905 74 0 69 chr3 71147819 71148105 -146889053 + (TA)n Simple_repeat Simple_repeat 1 266 0 301 372 25 8 chr3 71148131 71148252 -146888906 - MIR SINE MIR -17 245 123 1132 163 6 0 chr3 71148680 71148858 -146888300 + AluSc SINE Alu 120 298 -11 2170 177 51 63 chr3 71148891 71149416 -146887742 + L1MB3 LINE L1 5320 5838 -345 1105 230 39 0 chr3 71149403 71149660 -146887498 + L1ME LINE L1 5523 5789 -375 * 404 254 138 39 chr3 71150002 71150183 -146886975 + MIR SINE MIR 28 226 -36 189 0 0 0 chr3 71150204 71150225 -146886933 + (TTA)n Simple_repeat Simple_repeat 1 21 0 293 388 73 0 chr3 71150512 71150677 -146886481 + MIR SINE MIR 47 223 -39 39 38 0 0 chr3 71150720 71150773 -146886385 + AT_rich Low_complexity Low_complexity 1 53 0 183 129 0 0 chr3 71151711 71151742 -146885416 + (CAT)n Simple_repeat Simple_repeat 3 33 0 787 269 117 27 chr3 71151757 71152158 -146885000 + LTR33 LTR ERVL 15 451 -70 446 306 111 6 chr3 71152215 71152417 -146884741 - MIR SINE MIR -41 221 4 45318 36 3 4 chr3 71152469 71158635 -146878523 + L1PA4 LINE L1 1 6155 0 694 343 52 30 chr3 71159214 71159844 -146877314 + L2 LINE L2 2619 3266 -6 190 316 137 34 chr3 71160758 71160875 -146876283 - MIR3 SINE MIR -30 178 50 411 313 163 29 chr3 71161014 71161522 -146875636 + L2 LINE L2 2637 3230 -42 461 249 189 47 chr3 71161526 71161875 -146875283 - MLT1J1 LTR MaLR -4 442 76 552 295 5 50 chr3 71162164 71162364 -146874794 - MIR3 SINE MIR -1 207 17 236 302 142 0 chr3 71163269 71163375 -146873783 + MIR3 SINE MIR 1 121 -87 1290 144 95 39 chr3 71163680 71163986 -146873172 + MER33 DNA MER1_type 2 324 0 350 271 0 51 chr3 71164180 71164298 -146872860 + MIR SINE MIR 92 203 -59 360 214 92 69 chr3 71164347 71164478 -146872680 + L2 LINE L2 3176 3309 -4 247 281 71 103 chr3 71165285 71165621 -146871537 + L2 LINE L2 2731 3067 -246 248 53 26 0 chr3 71165700 71165738 -146871420 + (TA)n Simple_repeat Simple_repeat 2 40 0 215 321 0 0 chr3 71165806 71165859 -146871299 + L2 LINE L2 3176 3228 -85 762 161 0 8 chr3 71165882 71166000 -146871158 - FLAM_C SINE Alu -25 118 2 473 253 98 23 chr3 71166165 71166339 -146870819 - L2 LINE L2 0 3313 3127 381 290 81 0 chr3 71166601 71166725 -146870433 + L2 LINE L2 3180 3313 0 341 253 13 0 chr3 71166729 71166804 -146870354 - MIR SINE MIR -69 139 64 426 306 125 61 chr3 71167259 71167556 -146869602 - L2 LINE L2 -6 3266 2951 671 320 62 58 chr3 71167702 71168183 -146868975 - L2 LINE L2 -614 2700 2218 236 254 114 9 chr3 71168228 71168342 -146868816 + MER113 DNA MER1_type? 4 129 -392 274 222 13 18 chr3 71168710 71168776 -146868382 + L1MD2 LINE L1 6227 7933 -62 256 256 116 23 chr3 71168820 71168949 -146868209 + L1ME4a LINE L1 5959 6099 -22 490 298 63 39 chr3 71170464 71170719 -146866439 + MIR SINE MIR 2 262 0 2619 150 26 12 chr3 71170740 71171166 -146865992 + MSTB1 LTR MaLR 1 432 0 348 297 117 31 chr3 71171691 71171819 -146865339 - L2 LINE L2 0 3272 3134 861 199 46 54 chr3 71171932 71172029 -146865129 + L1ME1 LINE L1 5923 6019 -147 2098 99 11 11 chr3 71172029 71172351 -146864807 - AluSq SINE Alu 0 322 1 861 199 46 54 chr3 71172351 71172493 -146864665 + L1ME1 LINE L1 6019 6161 -5 184 398 10 0 chr3 71172866 71172969 -146864189 - MIR SINE MIR -103 159 56 850 307 41 0 chr3 71173234 71173504 -146863654 + MLT1I LTR MaLR 57 337 -72 2183 104 4 0 chr3 71173624 71173932 -146863226 + AluSp SINE Alu 2 310 0 204 67 0 0 chr3 71174255 71174285 -146862873 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 191 167 95 0 chr3 71174288 71174330 -146862828 - L2 LINE L2 -13 3259 3214 * 685 222 76 0 chr3 71174297 71174468 -146862690 - MIR SINE MIR -20 242 59 417 270 101 7 chr3 71176418 71176566 -146860592 + MER46C DNA MER2_type 1 162 -176 216 289 24 60 chr3 71176629 71176712 -146860446 + MIR SINE MIR 42 121 -87 324 0 0 0 chr3 71176714 71176750 -146860408 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 386 253 155 46 chr3 71176919 71177113 -146860045 - MIR SINE MIR -2 260 46 248 282 203 25 chr3 71177540 71177703 -146859455 + MIR3 SINE MIR 2 193 -15 349 346 58 0 chr3 71177978 71178082 -146859076 + L2 LINE L2 3147 3256 -16 1867 109 19 4 chr3 71178095 71178360 -146858798 + AluSc SINE Alu 36 304 -5 556 192 177 38 chr3 71178748 71179010 -146858148 - MER31B LTR ERV1 -81 385 8 307 256 13 26 chr3 71179088 71179166 -146857992 - L2 LINE L2 -36 3236 3160 1859 92 4 0 chr3 71179593 71179842 -146857316 - MER47A DNA MER2_type -6 360 111 1022 116 0 3 chr3 71179842 71180084 -146857074 + AluSq SINE Alu 1 305 -8 678 131 8 74 chr3 71180084 71180206 -146856952 - MER47A DNA MER2_type -252 114 1 1348 254 73 3 chr3 71180246 71180573 -146856585 - LTR16C LTR ERVL 0 491 142 238 241 63 0 chr3 71180702 71180781 -146856377 + MER103 DNA DNA 81 164 -2 800 213 66 0 chr3 71180879 71181062 -146856096 - MER58A DNA MER1_type -8 216 22 1194 171 21 70 chr3 71181236 71181321 -146855837 + L1MA9 LINE L1 6041 6129 -183 2227 123 0 3 chr3 71181321 71181629 -146855529 + AluSx SINE Alu 1 307 -5 1194 171 21 70 chr3 71181629 71181829 -146855329 + L1MA9 LINE L1 6129 6312 0 232 270 124 22 chr3 71181970 71182059 -146855099 + L2 LINE L2 3182 3279 -34 1038 209 39 5 chr3 71182065 71182271 -146854887 - MER8 DNA MER2_type -1 238 26 283 291 7 106 chr3 71182579 71182638 -146854520 - L2 LINE L2 0 3272 3209 828 200 44 56 chr3 71182638 71182818 -146854340 - MER45A DNA AcHobo 0 178 1 283 291 7 106 chr3 71182818 71182909 -146854249 - L2 LINE L2 -63 3209 3137 497 212 26 18 chr3 71183214 71183327 -146853831 + LTR16C LTR ERVL 369 482 -9 1230 205 130 39 chr3 71183363 71183410 -146853748 + MLT1A1 LTR MaLR 5 46 -319 2289 87 0 7 chr3 71183410 71183708 -146853450 + AluSc SINE Alu 1 296 -13 1230 205 130 39 chr3 71183708 71183991 -146853167 + MLT1A1 LTR MaLR 46 365 0 567 276 61 0 chr3 71184190 71184353 -146852805 + LTR33 LTR ERVL 3 175 -346 1928 151 0 3 chr3 71184504 71184811 -146852347 - AluSx SINE Alu 0 306 1 457 307 14 0 chr3 71185284 71185424 -146851734 - LTR33 LTR ERVL -2 519 378 * 533 249 9 94 chr3 71185411 71185624 -146851534 + MLT1K LTR MaLR 371 565 -23 492 296 94 14 chr3 71185950 71186163 -146850995 - MIR SINE MIR -23 239 10 255 303 71 20 chr3 71186526 71186625 -146850533 + MIR SINE MIR 5 108 -154 886 191 0 6 chr3 71186953 71187126 -146850032 + MER53 DNA DNA 1 172 -17 955 221 33 15 chr3 71187263 71187534 -146849624 + L1MC5 LINE L1 7638 7913 -48 473 373 6 23 chr3 71187603 71187780 -146849378 + MIR3 SINE MIR 3 176 -32 180 0 0 0 chr3 71188341 71188361 -146848797 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 371 202 55 46 chr3 71188403 71188512 -146848646 - HAL1b LINE L1 -13 1335 1226 758 197 24 56 chr3 71188528 71188741 -146848417 + L1MC4 LINE L1 6803 7008 -1034 798 81 10 0 chr3 71188766 71188865 -146848293 + AluS SINE Alu 2 101 -212 21 36 0 0 chr3 71189006 71189034 -146848124 + AT_rich Low_complexity Low_complexity 1 28 0 899 261 35 21 chr3 71189192 71189522 -146847636 + L1ME LINE L1 5128 5467 -703 231 257 40 40 chr3 71189752 71189826 -146847332 - MIR3 SINE MIR -134 74 1 687 291 84 0 chr3 71190211 71190414 -146846744 - MIR SINE MIR -8 254 35 2389 87 0 3 chr3 71190628 71190937 -146846221 + AluSq SINE Alu 3 310 -3 616 266 75 48 chr3 71191168 71191408 -146845750 + MIR SINE MIR 3 251 -11 183 287 230 0 chr3 71192449 71192536 -146844622 + MIR SINE MIR 78 184 -78 204 40 0 0 chr3 71192577 71192602 -146844556 + (TTTTC)n Simple_repeat Simple_repeat 4 28 0 2042 91 0 28 chr3 71192602 71192889 -146844269 - AluY SINE Alu -32 279 1 229 237 158 0 chr3 71193197 71193273 -146843885 - L2 LINE L2 -4 3309 3222 191 226 19 0 chr3 71193348 71193401 -146843757 + L3 LINE CR1 1523 1576 -1 980 241 9 5 chr3 71193871 71194095 -146843063 - MER58B DNA MER1_type 0 341 117 3361 157 2 37 chr3 71194202 71194360 -146842798 - L1MA9 LINE L1 -462 5850 5688 1584 170 64 7 chr3 71194360 71194643 -146842515 + AluJb SINE Alu 2 300 -12 3361 157 2 37 chr3 71194643 71194870 -146842288 - L1MA9 LINE L1 -624 5688 5455 1819 165 42 0 chr3 71194870 71195155 -146842003 - AluJb SINE Alu -15 297 1 3361 157 2 37 chr3 71195155 71195623 -146841535 - L1MA9 LINE L1 -857 5455 5026 654 284 64 5 chr3 71195899 71196103 -146841055 - MIR SINE MIR -31 231 16 576 325 71 24 chr3 71196187 71196526 -146840632 + L2 LINE L2 2383 2737 -577 235 167 182 0 chr3 71196554 71196620 -146840538 - MIR SINE MIR -21 241 164 25 0 0 0 chr3 71196705 71196730 -146840428 + AT_rich Low_complexity Low_complexity 1 25 0 180 152 0 0 chr3 71197041 71197074 -146840084 + CT-rich Low_complexity Low_complexity 2 34 0 533 314 74 18 chr3 71197712 71197950 -146839208 + MIR SINE MIR 9 260 -2 225 330 11 23 chr3 71197982 71198070 -146839088 + L2 LINE L2 3227 3313 0 708 263 59 34 chr3 71198128 71198364 -146838794 - MIR SINE MIR 0 262 21 2084 105 31 3 chr3 71198426 71198712 -146838446 - AluSx SINE Alu -18 294 1 225 139 116 0 chr3 71199059 71199102 -146838056 - L2 LINE L2 -5 3267 3220 563 314 106 8 chr3 71199171 71199426 -146837732 + LTR16A1 LTR ERVL 178 457 0 2088 174 73 29 chr3 71200191 71200669 -146836489 + MLT1D LTR MaLR 7 505 0 202 320 140 13 chr3 71200671 71200821 -146836337 + L2 LINE L2 2145 2313 -1001 375 89 0 0 chr3 71201471 71201527 -146835631 + MADE1 DNA Mariner 1 56 -24 198 395 16 21 chr3 71201552 71201742 -146835416 + L2 LINE L2 2837 3025 -247 285 333 8 8 chr3 71201986 71202109 -146835049 - LTR16B LTR ERVL -280 184 62 1302 251 87 43 chr3 71202777 71203247 -146833911 + LTR16C LTR ERVL 1 491 0 186 265 220 8 chr3 71203312 71203444 -146833714 - MIR SINE MIR -96 166 7 203 279 192 10 chr3 71203488 71203592 -146833566 + MIR SINE MIR 84 206 -56 2201 112 0 0 chr3 71203605 71203926 -146833232 + AluSx SINE Alu 1 321 0 1966 236 62 36 chr3 71204494 71205344 -146831814 - L1ME LINE L1 -2786 3294 2423 311 280 100 82 chr3 71205352 71205741 -146831417 - MLT1H LTR MaLR -55 494 99 863 226 46 31 chr3 71205780 71206103 -146831055 - L1ME LINE L1 -3643 2437 2110 3560 132 9 0 chr3 71206123 71206682 -146830476 - L1PA16 LINE L1 -11 6155 5592 196 264 19 0 chr3 71206732 71206785 -146830373 + MIR SINE MIR 196 249 -13 37023 78 7 8 chr3 71206972 71211857 -146825301 - L1PA6 LINE L1 -4 6150 1273 2394 73 0 3 chr3 71211857 71212159 -146824999 - AluY SINE Alu -10 301 1 37023 78 7 8 chr3 71212159 71213421 -146823737 - L1PA6 LINE L1 -4881 1273 11 3258 161 55 50 chr3 71213461 71214373 -146822785 - L1MB3 LINE L1 -2 6181 5171 2655 248 68 63 chr3 71214386 71216494 -146820664 - L1ME LINE L1 -3984 2096 3 21 0 0 0 chr3 71217074 71217095 -146820063 + AT_rich Low_complexity Low_complexity 1 21 0 290 65 0 22 chr3 71217279 71217325 -146819833 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 1177 54 0 0 chr3 71217325 71217474 -146819684 - L1PA3 LINE L1 -24 6131 5983 330 302 10 26 chr3 71217501 71217632 -146819526 + MIR SINE MIR 15 141 -67 2178 172 8 4 chr3 71217767 71218225 -146818933 + MER89 LTR ERV1 1 559 0 1003 130 86 19 chr3 71218309 71218471 -146818687 - AluSg/x SINE Alu -27 285 113 455 339 89 0 chr3 71219402 71219570 -146817588 + MER91A DNA MER1_type 1 183 -13 1149 108 0 0 chr3 71220337 71220592 -146816566 + (TTC)n Simple_repeat Simple_repeat 1 431 0 1149 108 0 0 chr3 71220592 71220768 -146816390 + (TTC)n Simple_repeat Simple_repeat 3 178 0 1695 196 0 0 chr3 71220884 71221155 -146816003 - AluJb SINE Alu -39 273 3 2220 139 19 3 chr3 71221756 71222129 -146815029 - L1MC1 LINE L1 -17 6316 5938 374 299 66 29 chr3 71222361 71222498 -146814660 - MIR3 SINE MIR -54 154 13 360 340 49 19 chr3 71222680 71222842 -146814316 + MIR SINE MIR 20 186 -76 197 143 0 0 chr3 71222858 71222893 -146814265 - MIR SINE MIR 0 262 228 180 0 0 0 chr3 71222940 71222960 -146814198 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 22 35 0 0 chr3 71223340 71223369 -146813789 + AT_rich Low_complexity Low_complexity 1 29 0 939 128 0 0 chr3 71223928 71224053 -146813105 + AluSx SINE Alu 1 125 -187 319 225 282 26 chr3 71224368 71224595 -146812563 - MLT1H LTR MaLR -16 533 249 1264 113 0 41 chr3 71224604 71224615 -146812543 + AluSx SINE Alu 121 131 -179 2197 121 0 0 chr3 71224615 71224920 -146812238 + AluSx SINE Alu 1 305 -7 1264 113 0 41 chr3 71224920 71225102 -146812056 + AluSx SINE Alu 131 306 -4 1631 158 39 42 chr3 71225284 71225602 -146811556 + AluJo SINE Alu 1 317 0 583 295 26 21 chr3 71225690 71225883 -146811275 + MIR SINE MIR 13 206 -56 * 847 291 52 16 chr3 71225881 71226132 -146811026 - MIR SINE MIR 0 262 3 417 305 67 49 chr3 71226909 71227132 -146810026 - MIR SINE MIR 0 262 36 294 165 24 12 chr3 71228053 71228138 -146809020 + (TA)n Simple_repeat Simple_repeat 1 86 0 331 258 11 21 chr3 71228138 71228231 -146808927 + L1MC4 LINE L1 6612 6703 -1339 393 75 0 0 chr3 71228294 71228347 -146808811 + (CAT)n Simple_repeat Simple_repeat 1 53 0 215 350 77 33 chr3 71228355 71228538 -146808620 - MIR SINE MIR -15 247 57 1131 316 49 19 chr3 71228581 71229109 -146808049 + L2 LINE L2 2494 3048 -265 370 253 77 48 chr3 71229132 71229363 -146807795 + L1ME1 LINE L1 5726 5963 -201 549 232 36 72 chr3 71229479 71229673 -146807485 + L2 LINE L2 3126 3312 -1 268 261 170 18 chr3 71231302 71231467 -146805691 - L2 LINE L2 -19 3294 3105 271 385 81 0 chr3 71231562 71231710 -146805448 + L2 LINE L2 3100 3259 -13 2355 84 0 0 chr3 71232669 71232965 -146804193 + AluY SINE Alu 1 296 -15 309 238 24 36 chr3 71232999 71233083 -146804075 - MIR SINE MIR -19 243 161 423 267 10 0 chr3 71233357 71233458 -146803700 - MIR3 SINE MIR -25 183 82 2079 108 11 3 chr3 71234165 71234451 -146802707 - AluSx SINE Alu -24 288 1 1860 175 13 7 chr3 71235463 71235772 -146801386 + AluSx SINE Alu 1 311 -1 2037 142 71 8 chr3 71236149 71236516 -146800642 - MLT1B LTR MaLR 0 390 1 641 213 97 43 chr3 71236908 71237166 -146799992 - MER102a DNA MER1_type -28 302 31 1217 260 75 43 chr3 71237174 71237456 -146799702 - MLT1H1 LTR MaLR -4 551 279 2412 118 22 3 chr3 71237456 71237813 -146799345 + THE1B LTR MaLR 1 364 0 1217 260 75 43 chr3 71237813 71238064 -146799094 - MLT1H1 LTR MaLR -276 279 1 323 320 20 70 chr3 71238255 71238455 -146798703 + MIR SINE MIR 34 223 -39 270 281 21 115 chr3 71238728 71238920 -146798238 - MIR SINE MIR -10 252 79 273 222 0 0 chr3 71239232 71239295 -146797863 + (TA)n Simple_repeat Simple_repeat 2 64 0 5786 57 1 0 chr3 71239300 71240054 -146797104 - L1PA7 LINE L1 -3 6151 5397 278 264 14 0 chr3 71240076 71240148 -146797010 - MIR SINE MIR -10 252 180 2869 135 13 8 chr3 71240150 71240624 -146796534 - L1MB3 LINE L1 -8 6175 5700 637 295 45 20 chr3 71240725 71240969 -146796189 - MIR SINE MIR -2 260 11 21 0 0 0 chr3 71241435 71241456 -146795702 + AT_rich Low_complexity Low_complexity 1 21 0 679 269 93 9 chr3 71241603 71241819 -146795339 + MIR SINE MIR 29 262 0 798 237 15 85 chr3 71242023 71242365 -146794793 - L1MD2 LINE L1 -4 6355 6038 421 229 114 38 chr3 71242956 71243087 -146794071 + L2 LINE L2 3173 3313 0 21 0 0 0 chr3 71243506 71243527 -146793631 + AT_rich Low_complexity Low_complexity 1 21 0 267 238 0 105 chr3 71243792 71243897 -146793261 + MIR SINE MIR 90 183 -79 1237 235 132 27 chr3 71244602 71245041 -146792117 - MLT1D LTR MaLR 0 505 21 21 0 0 0 chr3 71245063 71245084 -146792074 + AT_rich Low_complexity Low_complexity 1 21 0 441 266 44 44 chr3 71245189 71245418 -146791740 + L1MC4a LINE L1 5597 5825 -1983 31 0 0 0 chr3 71245504 71245535 -146791623 + AT_rich Low_complexity Low_complexity 1 31 0 242 29 29 0 chr3 71245559 71245594 -146791564 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 40559 36 21 1 chr3 71245595 71251611 -146785547 - L1PA3 LINE L1 -12 6143 3 338 272 54 43 chr3 71252008 71252242 -146784916 - L1MEd LINE L1 -1233 1257 924 5064 177 4 2 chr3 71252486 71254130 -146783028 - L1P5 LINE L1 -337 5814 4167 200 189 0 0 chr3 71254156 71254193 -146782965 + (TG)n Simple_repeat Simple_repeat 1 37 0 269 237 103 96 chr3 71254799 71254955 -146782203 + MLT1H LTR MaLR 392 548 -1 3804 122 21 13 chr3 71255249 71255881 -146781277 - L1MA4A LINE L1 -32 6271 5635 294 294 71 0 chr3 71255943 71256028 -146781130 - L3 LINE CR1 -72 1505 1415 23 0 0 0 chr3 71256774 71256797 -146780361 + AT_rich Low_complexity Low_complexity 1 23 0 560 276 124 47 chr3 71257519 71257921 -146779237 + LTR16A LTR ERVL 12 444 -6 1116 161 54 5 chr3 71258172 71258377 -146778781 - MER20 DNA MER1_type -4 215 1 2388 86 3 0 chr3 71258437 71258741 -146778417 - AluSp SINE Alu -7 306 2 237 294 68 25 chr3 71259285 71259520 -146777638 - L1ME4a LINE L1 -4 6117 5873 304 293 104 9 chr3 71260112 71260218 -146776940 + MIR SINE MIR 27 142 -66 1216 193 34 28 chr3 71260364 71260686 -146776472 + MER33 DNA MER1_type 1 324 0 26 0 0 0 chr3 71260999 71261025 -146776133 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr3 71261365 71261388 -146775770 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 10517 136 5 7 chr3 71261418 71263940 -146773218 - L1PA11 LINE L1 -5 6169 3644 231 248 38 76 chr3 71263953 71264058 -146773100 - MIR SINE MIR -139 123 23 1008 204 120 23 chr3 71264565 71264874 -146772284 - MER58B DNA MER1_type -1 340 2 198 281 193 0 chr3 71264883 71264940 -146772218 - L2 LINE L2 -49 3223 3156 533 152 89 76 chr3 71265011 71265169 -146771989 + MER103 DNA DNA 4 163 -3 220 299 52 41 chr3 71265246 71265343 -146771815 - MIR SINE MIR -92 116 19 286 206 16 32 chr3 71266598 71266661 -146770497 - MIR SINE MIR -200 62 1 1780 200 33 59 chr3 71267140 71267651 -146769507 + MLT1D LTR MaLR 1 498 -7 759 216 55 35 chr3 71267764 71267963 -146769195 + MER3 DNA MER1_type 7 209 0 261 277 84 0 chr3 71267970 71268053 -146769105 + MIR SINE MIR 117 206 -56 213 254 51 0 chr3 71268841 71268900 -146768258 + MIR SINE MIR 104 165 -97 429 245 9 0 chr3 71269089 71269195 -146767963 - LTR16A1 LTR ERVL 0 457 351 2222 131 8 3 chr3 71269201 71269552 -146767606 - THE1B LTR MaLR 0 364 12 369 274 92 75 chr3 71269597 71269878 -146767280 - LTR16A1 LTR ERVL -165 292 7 371 290 31 62 chr3 71270347 71270509 -146766649 - MIR SINE MIR -12 250 94 1137 54 0 32 chr3 71270628 71270814 -146766344 + (TA)n Simple_repeat Simple_repeat 1 180 0 374 380 16 0 chr3 71270840 71270961 -146766197 - MIR SINE MIR -17 245 123 270 194 0 0 chr3 71271756 71271818 -146765340 + (ATG)n Simple_repeat Simple_repeat 3 64 0 483 245 190 6 chr3 71271850 71272013 -146765145 - MIR SINE MIR -54 208 16 632 311 70 9 chr3 71272087 71272315 -146764843 - MIR SINE MIR -4 258 17 459 290 161 19 chr3 71272333 71272545 -146764613 - MIR SINE MIR -11 251 8 257 322 42 7 chr3 71273357 71273500 -146763658 - MIR SINE MIR -13 249 102 * 393 273 136 20 chr3 71273481 71273679 -146763479 + MIR SINE MIR 5 225 -37 208 98 0 59 chr3 71273804 71273855 -146763303 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 1355 235 61 28 chr3 71274175 71274571 -146762587 - MLT1C LTR MaLR 0 467 59 14655 24 1 0 chr3 71274596 71277054 -146760104 - L1PA2 LINE L1 0 6155 3661 374 247 172 40 chr3 71277059 71277233 -146759925 - L2 LINE L2 0 3313 3117 22 70 0 0 chr3 71278468 71278511 -146758647 + AT_rich Low_complexity Low_complexity 1 43 0 710 185 0 0 chr3 71278624 71278743 -146758415 + FAM SINE Alu 4 122 -63 331 232 61 20 chr3 71279158 71279257 -146757901 + MIR SINE MIR 106 208 -54 198 239 149 15 chr3 71279728 71279795 -146757363 + L2 LINE L2 3154 3229 -43 185 65 32 0 chr3 71279813 71279844 -146757314 + (TA)n Simple_repeat Simple_repeat 1 32 0 261 0 0 0 chr3 71279847 71279876 -146757282 + (CA)n Simple_repeat Simple_repeat 2 30 0 403 344 85 9 chr3 71280617 71280829 -146756329 + MIR SINE MIR 35 262 0 509 257 204 7 chr3 71281516 71281668 -146755490 - MER5A DNA MER1_type -4 185 4 189 262 0 0 chr3 71281841 71281883 -146755275 - MIR SINE MIR -10 252 211 431 241 51 51 chr3 71281900 71282095 -146755063 + HERVH LTR ERV1 3797 3991 -3722 * 1192 271 10 44 chr3 71282084 71282619 -146754539 + HERVH LTR ERV1 3919 4432 -2299 1241 193 54 88 chr3 71283153 71283619 -146753539 + LTR7 LTR ERV1 1 450 0 735 255 60 5 chr3 71283620 71283804 -146753354 - MIR SINE MIR -57 205 12 656 288 92 9 chr3 71285459 71285688 -146751470 + MIR SINE MIR 4 251 -11 420 20 0 0 chr3 71286693 71286742 -146750416 + (TG)n Simple_repeat Simple_repeat 2 50 0 1113 304 10 55 chr3 71286869 71287287 -146749871 - L2 LINE L2 -10 3303 2905 213 256 201 35 chr3 71287421 71287620 -146749538 - L2 LINE L2 -666 2648 2417 190 323 20 50 chr3 71288256 71288355 -146748803 - MIR SINE MIR -166 96 1 325 302 52 0 chr3 71288416 71288532 -146748626 + MIR SINE MIR 127 248 -14 224 194 32 81 chr3 71289204 71289266 -146747892 + L2 LINE L2 3206 3264 -8 283 265 24 36 chr3 71289614 71289697 -146747461 + L3 LINE CR1 605 686 -891 2269 110 0 7 chr3 71289712 71290021 -146747137 - AluSc SINE Alu -2 307 1 8545 46 0 1 chr3 71290123 71291242 -146745916 - L1P LINE L1 -774 5372 4255 594 143 8 24 chr3 71291342 71291468 -146745690 + GA-rich Low_complexity Low_complexity 1 124 0 2731 204 49 75 chr3 71291595 71292077 -146745081 + MER63C DNA MER1_type 1 447 -613 3228 33 10 3 chr3 71292077 71292468 -146744690 - L1PA3 LINE L1 -1 6154 5761 2731 204 49 75 chr3 71292468 71292940 -146744218 + MER63C DNA MER1_type 447 930 0 271 279 110 66 chr3 71292940 71293076 -146744082 + L3 LINE CR1 1435 1576 -1 234 298 35 74 chr3 71294044 71294104 -146743054 + MIR SINE MIR 19 80 -182 1197 224 13 4 chr3 71294104 71294341 -146742817 + MER8 DNA MER2_type 1 239 0 234 298 35 74 chr3 71294341 71294463 -146742695 + MIR SINE MIR 80 192 -70 316 311 28 0 chr3 71294739 71294845 -146742313 - MIR SINE MIR -108 154 46 323 235 130 9 chr3 71294913 71295028 -146742130 + MER103 DNA DNA 38 166 0 357 248 43 0 chr3 71295982 71296099 -146741059 - MER117 DNA MER1_type -74 123 2 797 172 8 22 chr3 71297346 71297480 -146739678 - FLAM_A SINE Alu -1 132 1 10036 36 0 0 chr3 71297740 71299644 -146737514 - L1PA3 LINE L1 0 6155 4252 280 346 0 0 chr3 71299784 71299865 -146737293 - L2 LINE L2 -7 3306 3226 186 313 223 0 chr3 71300014 71300126 -146737032 - L2 LINE L2 -1 3312 3176 2461 76 0 22 chr3 71300967 71301284 -146735874 + AluY SINE Alu 1 310 -1 1491 169 4 4 chr3 71301343 71301580 -146735578 + AluJo SINE Alu 54 290 -22 249 238 111 40 chr3 71302312 71302438 -146734720 + L2 LINE L2 2949 3083 -189 234 176 0 0 chr3 71302649 71302700 -146734458 + GA-rich Low_complexity Low_complexity 1 51 0 388 314 66 7 chr3 71302705 71302842 -146734316 - MIR SINE MIR -10 252 108 751 223 115 90 chr3 71303037 71303360 -146733798 + MER46C DNA MER2_type 1 331 -7 731 298 33 8 chr3 71303367 71303609 -146733549 - MIR SINE MIR -2 260 13 2385 184 29 12 chr3 71303650 71304069 -146733089 + MSTB LTR MaLR 1 426 0 1183 190 148 11 chr3 71304538 71304827 -146732331 + AluJo SINE Alu 1 302 0 396 316 74 26 chr3 71305094 71305284 -146731874 - L2 LINE L2 -4 3309 3111 605 291 138 21 chr3 71305330 71305656 -146731502 - L2 LINE L2 -363 2951 2588 376 182 0 0 chr3 71305667 71305733 -146731425 - LTR16C LTR ERVL -11 480 415 1297 268 80 16 chr3 71305751 71306176 -146730982 - LTR16C LTR ERVL -39 452 1 215 313 188 0 chr3 71306505 71306617 -146730541 - L2 LINE L2 -6 3307 3175 7811 32 0 1 chr3 71306849 71308445 -146728713 - L1PA4 LINE L1 0 6155 4557 763 289 20 20 chr3 71308633 71308886 -146728272 - MIR SINE MIR -2 260 8 467 233 9 60 chr3 71309937 71310053 -146727105 - MER81 DNA DNA -2 112 3 2083 119 14 0 chr3 71310258 71310383 -146726775 + AluY SINE Alu 1 123 -188 369 0 0 0 chr3 71310383 71310424 -146726734 + (CA)n Simple_repeat Simple_repeat 2 42 0 2083 119 14 0 chr3 71310424 71310584 -146726574 + AluY SINE Alu 123 290 -21 255 31 0 0 chr3 71310587 71310619 -146726539 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 2128 120 3 7 chr3 71311432 71311724 -146725434 + AluSx SINE Alu 1 291 -21 2418 78 3 3 chr3 71311920 71312229 -146724929 - AluY SINE Alu -2 309 1 184 179 0 0 chr3 71313075 71313103 -146724055 + L2 LINE L2 3232 3259 -13 450 302 29 0 chr3 71313526 71313665 -146723493 - MIR SINE MIR -27 235 93 22 35 0 0 chr3 71314233 71314262 -146722896 + AT_rich Low_complexity Low_complexity 1 29 0 527 252 146 7 chr3 71315054 71315205 -146721953 - MIR SINE MIR -89 173 2 227 300 0 0 chr3 71315362 71315422 -146721736 + GA-rich Low_complexity Low_complexity 2 61 0 688 222 35 69 chr3 71315522 71315725 -146721433 - MIR SINE MIR -66 196 1 2306 147 6 18 chr3 71315874 71316215 -146720943 + MER1B DNA MER1_type 1 337 0 2376 98 0 0 chr3 71316386 71316692 -146720466 + AluSx SINE Alu 1 306 -6 402 225 54 18 chr3 71316959 71317070 -146720088 - MER117 DNA MER1_type -82 115 1 221 232 24 85 chr3 71317163 71317245 -146719913 - MER5A DNA MER1_type -77 112 36 605 255 38 6 chr3 71317269 71317426 -146719732 + MER5B DNA MER1_type 3 164 -14 548 294 163 14 chr3 71317643 71317925 -146719233 - LTR16C LTR ERVL -8 483 160 280 250 292 8 chr3 71318238 71318358 -146718800 + MER117 DNA MER1_type 7 160 -37 773 169 13 26 chr3 71318396 71318550 -146718608 - MER5B DNA MER1_type -24 154 3 289 277 60 54 chr3 71320120 71320304 -146716854 + L2 LINE L2 160 344 -2970 556 253 24 53 chr3 71320306 71320476 -146716682 + L2 LINE L2 1273 1437 -1877 670 279 75 17 chr3 71320491 71320731 -146716427 + L2 LINE L2 3048 3301 -12 1624 201 3 0 chr3 71320731 71321015 -146716143 + AluJo SINE Alu 1 285 -27 312 27 0 0 chr3 71321020 71321057 -146716101 + (CA)n Simple_repeat Simple_repeat 2 38 0 1065 279 109 10 chr3 71321092 71321505 -146715653 + L2 LINE L2 1455 1908 -1406 193 290 129 0 chr3 71321506 71321568 -146715590 - L2 LINE L2 -5 3308 3239 * 201 244 151 23 chr3 71321566 71321652 -146715506 + L2 LINE L2 1908 2004 -1310 2569 152 50 39 chr3 71321659 71322350 -146714808 + MER51A LTR ERV1 1 625 -9 778 279 289 7 chr3 71322381 71322797 -146714361 + L2 LINE L2 2018 2550 -764 897 281 84 36 chr3 71323023 71323415 -146713743 + L2 LINE L2 2530 2940 -374 1776 175 208 63 chr3 71323441 71324128 -146713030 - L1MCa LINE L1 -4219 2345 1559 1506 281 59 11 chr3 71324180 71324653 -146712505 - L1MCa LINE L1 -5549 496 1 277 229 76 51 chr3 71324964 71325082 -146712076 + MER103 DNA DNA 39 159 -7 283 265 91 91 chr3 71325160 71325416 -146711742 + MIR SINE MIR 21 262 0 246 311 220 8 chr3 71326579 71326701 -146710457 - MIR SINE MIR -62 146 19 189 0 0 0 chr3 71327328 71327349 -146709809 + (TAA)n Simple_repeat Simple_repeat 3 23 0 296 239 169 0 chr3 71327477 71327548 -146709610 - MIR SINE MIR -108 154 72 242 278 286 0 chr3 71327963 71328089 -146709069 - MIR SINE MIR -11 251 90 203 298 0 21 chr3 71328168 71328262 -146708896 + GA-rich Low_complexity Low_complexity 4 95 0 186 368 0 18 chr3 71328264 71328321 -146708837 - L2 LINE L2 -78 3194 3139 519 230 126 0 chr3 71328402 71328537 -146708621 + MIR SINE MIR 92 243 -19 234 374 114 0 chr3 71328702 71328825 -146708333 + L2 LINE L2 3133 3269 -3 249 390 8 8 chr3 71329601 71329719 -146707439 - MIR SINE MIR -137 125 8 360 88 0 0 chr3 71329728 71329785 -146707373 + (CA)n Simple_repeat Simple_repeat 1 57 0 242 302 207 0 chr3 71329941 71330057 -146707101 + L2 LINE L2 2618 2757 -557 912 256 13 42 chr3 71330401 71330576 -146706582 - LTR40a LTR ERVL -112 407 239 4033 116 4 6 chr3 71330576 71331103 -146706055 - MER1A DNA MER1_type 0 527 2 912 256 13 42 chr3 71331103 71331165 -146705993 - LTR40a LTR ERVL -280 239 177 471 311 93 26 chr3 71331194 71331528 -146705630 + L2 LINE L2 2769 3124 -148 496 84 127 0 chr3 71331544 71331615 -146705543 - MADE1 DNA Mariner 0 80 1 26 64 0 0 chr3 71332199 71332246 -146704912 + AT_rich Low_complexity Low_complexity 1 47 0 2214 232 61 16 chr3 71332282 71332777 -146704381 - LTR40a LTR ERVL -2 517 1 1255 270 18 29 chr3 71332907 71333288 -146703870 + LTR16C LTR ERVL 115 491 0 202 369 131 51 chr3 71333437 71333789 -146703369 + L2 LINE L2 2811 3190 -82 2493 71 0 0 chr3 71333812 71334109 -146703049 - AluY SINE Alu -12 299 3 639 209 52 39 chr3 71334188 71334341 -146702817 - MIR SINE MIR -71 191 37 2242 119 3 3 chr3 71334435 71334747 -146702411 + AluSq SINE Alu 1 312 -1 207 0 0 0 chr3 71334758 71334781 -146702377 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 195 162 0 0 chr3 71334774 71334811 -146702347 + A-rich Low_complexity Low_complexity 3 39 0 * 181 387 0 32 chr3 71334900 71334993 -146702165 + MIR SINE MIR 26 115 -147 918 191 21 26 chr3 71336084 71336278 -146700880 + MLT1D LTR MaLR 313 505 0 1083 306 70 14 chr3 71336360 71336676 -146700482 + L2 LINE L2 2703 3000 -313 538 78 0 111 chr3 71336676 71336726 -146700432 - MADE1 DNA Mariner 0 80 43 2058 120 14 7 chr3 71336726 71337018 -146700140 + AluSx SINE Alu 1 294 -18 538 78 0 111 chr3 71337018 71337057 -146700101 - MADE1 DNA Mariner -37 43 1 1083 306 70 14 chr3 71337057 71337303 -146699855 + L2 LINE L2 3000 3307 -6 1911 162 3 7 chr3 71337712 71338008 -146699150 - AluSx SINE Alu -17 295 1 2271 110 0 0 chr3 71338137 71338447 -146698711 + AluY SINE Alu 1 310 -1 602 242 61 0 chr3 71338461 71338593 -146698565 + FLAM_A SINE Alu 1 140 -2 46 0 0 0 chr3 71338760 71338806 -146698352 + AT_rich Low_complexity Low_complexity 1 46 0 419 213 148 26 chr3 71338872 71339027 -146698131 - Charlie8 DNA MER1_type -2152 265 92 1568 117 30 30 chr3 71339040 71339270 -146697888 + MER30 DNA MER1_type 1 230 0 547 273 160 0 chr3 71339974 71340230 -146696928 - L1ME LINE L1 -303 5818 5522 298 312 86 57 chr3 71340814 71341128 -146696030 + L3 LINE CR1 628 950 -627 465 308 166 8 chr3 71341298 71341545 -146695613 + L3 LINE CR1 906 1191 -386 2568 154 31 2 chr3 71341681 71342097 -146695061 - MSTA LTR MaLR 0 428 1 443 340 25 15 chr3 71342345 71342545 -146694613 + L2 LINE L2 2853 3054 -259 2127 89 9 61 chr3 71342587 71342944 -146694214 - AluSc SINE Alu 0 340 1 275 230 74 59 chr3 71343006 71343141 -146694017 + L2 LINE L2 3113 3249 -64 1737 120 38 15 chr3 71343191 71343476 -146693682 + AluSx SINE Alu 23 312 0 897 306 74 51 chr3 71343476 71343621 -146693537 + L2 LINE L2 2742 2882 -431 2422 83 0 6 chr3 71343621 71343934 -146693224 - AluY SINE Alu 0 311 1 897 306 74 51 chr3 71343934 71344347 -146692811 + L2 LINE L2 2882 3313 0 385 325 25 20 chr3 71344326 71344513 -146692645 - MIR SINE MIR -59 203 15 * 256 273 0 0 chr3 71344628 71344694 -146692464 + (CATA)n Simple_repeat Simple_repeat 3 68 0 379 324 91 23 chr3 71345044 71345220 -146691938 - MIR SINE MIR -71 191 4 463 269 207 0 chr3 71345283 71345428 -146691730 + MER5A DNA MER1_type 9 183 -6 180 0 0 0 chr3 71345957 71345977 -146691181 + (TTG)n Simple_repeat Simple_repeat 2 21 0 22 0 0 0 chr3 71346979 71347001 -146690157 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 71347527 71347550 -146689608 + AT_rich Low_complexity Low_complexity 1 23 0 657 231 39 26 chr3 71347585 71347741 -146689417 - MER91B DNA MER1_type -15 175 18 457 276 171 18 chr3 71347880 71348097 -146689061 - MIR SINE MIR 0 262 13 273 265 15 15 chr3 71348148 71348216 -146688942 - MER113 DNA MER1_type? 0 521 454 3304 153 37 19 chr3 71348304 71348828 -146688330 + L1MD1 LINE L1 5637 6175 -67 2578 62 0 0 chr3 71348828 71349135 -146688023 - AluY SINE Alu -4 307 1 3304 153 37 19 chr3 71349135 71349205 -146687953 + L1MD1 LINE L1 6175 6242 0 432 245 159 26 chr3 71349352 71349503 -146687655 + MIR SINE MIR 92 262 0 280 245 51 20 chr3 71349804 71349902 -146687256 + MIR SINE MIR 89 189 -73 322 205 26 13 chr3 71350505 71350583 -146686575 + MER5A DNA MER1_type 30 108 -81 459 0 0 0 chr3 71350627 71350678 -146686480 + (TG)n Simple_repeat Simple_repeat 2 52 0 2006 119 0 0 chr3 71350680 71350948 -146686210 - AluSx SINE Alu -31 281 14 225 159 0 0 chr3 71351050 71351094 -146686064 + (TA)n Simple_repeat Simple_repeat 2 45 0 1281 156 35 80 chr3 71351393 71351417 -146685741 - L1MC2 LINE L1 0 6344 6320 1945 145 16 10 chr3 71351417 71351727 -146685431 + AluJb SINE Alu 1 312 0 1281 156 35 80 chr3 71351727 71352041 -146685117 - L1MC2 LINE L1 -24 6320 6021 850 336 91 34 chr3 71352561 71353511 -146683647 - L2 LINE L2 -1 3271 2261 333 190 116 50 chr3 71353535 71353656 -146683502 - MER113 DNA MER1_type? -42 479 351 1177 87 0 0 chr3 71353678 71353828 -146683330 + AluY SINE Alu 151 300 -11 443 266 90 18 chr3 71353862 71354084 -146683074 - MER113 DNA MER1_type? -282 239 2 835 174 84 12 chr3 71354909 71355076 -146682082 + MER3 DNA MER1_type 1 179 -30 2054 156 0 0 chr3 71355153 71355460 -146681698 - AluSx SINE Alu -5 307 1 767 229 144 5 chr3 71355559 71355760 -146681398 - MIR SINE MIR -29 233 5 1026 215 45 0 chr3 71355766 71355966 -146681192 - MER3 DNA MER1_type 0 209 1 342 328 35 0 chr3 71356036 71356152 -146681006 - L2 LINE L2 -19 3253 3134 874 270 46 7 chr3 71356172 71356457 -146680701 + L1MC4a LINE L1 4882 5177 -969 576 201 119 119 chr3 71356468 71356539 -146680619 + Charlie8 DNA MER1_type 1 71 -259 1650 192 0 17 chr3 71356539 71356830 -146680328 + AluJb SINE Alu 1 286 -26 576 201 119 119 chr3 71356830 71357036 -146680122 + Charlie8 DNA MER1_type 70 278 -52 204 190 172 0 chr3 71357168 71357226 -146679932 - L2 LINE L2 -231 3082 3015 2289 99 3 0 chr3 71358773 71359076 -146678082 + AluSx SINE Alu 1 304 -8 1833 178 0 10 chr3 71359241 71359544 -146677614 + AluJb SINE Alu 5 304 -8 26 64 0 0 chr3 71359729 71359776 -146677382 + AT_rich Low_complexity Low_complexity 1 47 0 2367 86 3 10 chr3 71359958 71360259 -146676899 - AluSp SINE Alu -14 299 1 2234 124 7 0 chr3 71361238 71361544 -146675614 + AluSx SINE Alu 1 308 -4 208 147 0 0 chr3 71362122 71362156 -146675002 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 21 36 0 0 chr3 71362797 71362825 -146674333 + AT_rich Low_complexity Low_complexity 1 28 0 183 42 0 0 chr3 71364063 71364087 -146673071 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 183 129 0 0 chr3 71364588 71364619 -146672539 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 1887 171 3 0 chr3 71365774 71366061 -146671097 + AluSx SINE Alu 6 293 -19 447 126 0 103 chr3 71366090 71366177 -146670981 - MADE1 DNA Mariner -2 78 1 558 72 0 48 chr3 71366736 71366819 -146670339 + L1MB3 LINE L1 6090 6168 -15 24 0 0 0 chr3 71366827 71366851 -146670307 + AT_rich Low_complexity Low_complexity 1 24 0 294 246 15 0 chr3 71366868 71366933 -146670225 - L2 LINE L2 -21 3292 3227 1537 147 8 19 chr3 71367223 71367482 -146669676 + AluJb SINE Alu 54 309 -3 1217 258 106 20 chr3 71367575 71368067 -146669091 + L1MC4a LINE L1 5402 5935 -1873 27 0 0 0 chr3 71368260 71368287 -146668871 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr3 71368526 71368550 -146668608 + AT_rich Low_complexity Low_complexity 1 24 0 343 74 69 9 chr3 71368951 71369016 -146668142 + MSTC LTR MaLR 1 66 -299 1851 100 15 0 chr3 71369016 71369287 -146667871 + L1MA8 LINE L1 5333 5607 -693 2286 108 0 66 chr3 71369303 71369683 -146667475 + L1PB2 LINE L1 5737 6091 -60 1537 165 4 23 chr3 71369686 71369947 -146667211 - AluJb SINE Alu -56 256 1 2047 135 4 0 chr3 71369973 71370278 -146666880 - AluSx SINE Alu 0 306 1 1285 123 0 5 chr3 71370292 71370479 -146666679 + L1MA8 LINE L1 5595 5780 -520 2478 67 0 3 chr3 71370479 71370779 -146666379 + AluY SINE Alu 1 299 -12 210 216 0 0 chr3 71370780 71370817 -146666341 + (TG)n Simple_repeat Simple_repeat 2 38 0 2644 163 16 25 chr3 71370848 71371362 -146665796 + L1MA8 LINE L1 5782 6290 -1 1367 252 5 48 chr3 71371376 71371749 -146665409 + MSTD LTR MaLR 39 395 -1 259 107 89 18 chr3 71371750 71371806 -146665352 + MSTD-int LTR MaLR 1 60 -1591 484 79 79 0 chr3 71371806 71371882 -146665276 + LTR54 LTR ERV1 429 510 0 645 239 83 48 chr3 71371886 71372116 -146665042 + MER57-int LTR ERV1 1909 2146 -4185 397 243 19 19 chr3 71372107 71372210 -146664948 + MER57-int LTR ERV1 2092 2194 -4137 * 2213 104 0 10 chr3 71373272 71373571 -146663587 - AluSq SINE Alu -17 296 1 615 185 176 89 chr3 71374076 71374316 -146662842 + MER57-int LTR ERV1 3059 3332 -1604 2258 105 3 0 chr3 71374316 71374620 -146662538 + AluSx SINE Alu 1 305 -7 615 185 176 89 chr3 71374620 71374681 -146662477 + MER57-int LTR ERV1 3332 3386 -1550 4501 118 66 54 chr3 71374681 71375526 -146661632 + MER4D LTR ERV1 1 610 0 2226 209 65 40 chr3 71375530 71375968 -146661190 + MER57-int LTR ERV1 3387 3341 -1530 2107 119 3 3 chr3 71375968 71376261 -146660897 + AluSx SINE Alu 3 295 -17 2226 209 65 40 chr3 71376261 71377045 -146660113 + MER57-int LTR ERV1 3340 4103 -768 2046 151 0 0 chr3 71377057 71377361 -146659797 - AluSq SINE Alu -9 304 1 2129 123 10 7 chr3 71377437 71377747 -146659411 - AluSx SINE Alu -1 311 1 1724 216 45 13 chr3 71377860 71378235 -146658923 + MER57-int LTR ERV1 6752 7138 -399 2434 166 19 74 chr3 71378240 71378753 -146658405 + LTR54 LTR ERV1 1 485 -25 911 238 54 102 chr3 71378757 71379148 -146658010 + MST-int LTR MaLR 664 1035 -616 2259 129 0 0 chr3 71379729 71380040 -146657118 + AluSx SINE Alu 1 311 -1 236 273 83 8 chr3 71380339 71380460 -146656698 + MIR SINE MIR 129 258 -4 2496 63 0 0 chr3 71380488 71380787 -146656371 + AluY SINE Alu 1 299 -12 2787 13 0 0 chr3 71381588 71381892 -146655266 + AluYa5 SINE Alu 1 304 -7 321 280 145 45 chr3 71382810 71383010 -146654148 + L1MC/D LINE L1 5580 5799 -2009 2113 135 44 33 chr3 71383043 71383406 -146653752 + L1MA3 LINE L1 5932 6298 -7 472 294 114 48 chr3 71383487 71383585 -146653573 - MIR SINE MIR -1 261 171 2281 75 3 3 chr3 71383585 71383879 -146653279 - AluY SINE Alu -17 294 1 472 294 114 48 chr3 71383879 71384008 -146653150 - MIR SINE MIR -91 171 19 24 0 0 0 chr3 71384625 71384649 -146652509 + AT_rich Low_complexity Low_complexity 1 24 0 340 154 0 0 chr3 71385022 71385074 -146652084 - MER94 DNA DNA -80 54 3 358 233 35 0 chr3 71385077 71385163 -146651995 - MIR SINE MIR -46 216 128 246 293 67 0 chr3 71385630 71385705 -146651453 + MIR SINE MIR 65 144 -64 780 301 143 30 chr3 71385961 71386633 -146650525 + L2 LINE L2 2535 3303 -10 1058 158 5 31 chr3 71386832 71387028 -146650130 - AluJo SINE Alu -13 299 109 881 182 11 66 chr3 71387028 71387209 -146649949 - AluJo SINE Alu -140 172 2 357 312 36 22 chr3 71387911 71388049 -146649109 - MIR SINE MIR -7 255 116 238 316 71 52 chr3 71388121 71388390 -146648768 + L2 LINE L2 2346 2619 -695 470 179 136 43 chr3 71388409 71388549 -146648609 + MIR SINE MIR 9 161 -101 207 94 0 0 chr3 71388636 71388655 -146648503 + (TG)n Simple_repeat Simple_repeat 2 23 -10 1817 145 14 14 chr3 71388655 71388951 -146648207 - AluJb SINE Alu -15 297 2 207 94 0 0 chr3 71388951 71388963 -146648195 + (TG)n Simple_repeat Simple_repeat 22 33 0 357 312 36 22 chr3 71390709 71390847 -146646311 + MIR SINE MIR 116 255 -7 185 143 0 20 chr3 71391438 71391487 -146645671 + (CGG)n Simple_repeat Simple_repeat 1 48 0 22 0 0 0 chr3 71391534 71391556 -146645602 + GC_rich Low_complexity Low_complexity 1 22 0 253 0 54 0 chr3 71391575 71391612 -146645546 + (CCG)n Simple_repeat Simple_repeat 3 41 0 26 0 0 0 chr3 71391642 71391668 -146645490 + GC_rich Low_complexity Low_complexity 1 26 0 27 62 0 0 chr3 71391684 71391732 -146645426 + GC_rich Low_complexity Low_complexity 1 48 0 2779 16 0 13 chr3 71393243 71393558 -146643600 + AluYa5 SINE Alu 1 311 0 1893 145 0 26 chr3 71393886 71394190 -146642968 - AluJo SINE Alu -16 296 1 902 183 6 6 chr3 71394961 71395130 -146642028 - AluJb SINE Alu 0 312 144 1791 94 20 104 chr3 71395212 71395511 -146641647 + AluSx SINE Alu 1 274 -38 260 53 26 0 chr3 71395515 71395553 -146641605 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2124 125 6 3 chr3 71397048 71397359 -146639799 - AluSx SINE Alu 0 312 1 1339 199 117 10 chr3 71397664 71397971 -146639187 - MER58B DNA MER1_type 0 341 2 452 270 93 23 chr3 71399092 71399307 -146637851 + L1ME4a LINE L1 5626 5855 -266 34 96 0 0 chr3 71399421 71399525 -146637633 + AT_rich Low_complexity Low_complexity 1 104 0 347 181 170 19 chr3 71399893 71400030 -146637128 - MLT1H LTR MaLR -2 590 414 906 258 60 15 chr3 71400062 71400329 -146636829 - MLT1H LTR MaLR -228 321 43 419 272 76 6 chr3 71400409 71400567 -146636591 - MIR SINE MIR -28 234 66 1392 211 33 23 chr3 71401336 71401635 -146635523 - AluJo SINE Alu -10 302 1 1663 176 60 3 chr3 71402438 71402739 -146634419 - MLT1A1 LTR MaLR 0 365 48 181 0 33 33 chr3 71402739 71402769 -146634389 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 233 167 0 0 chr3 71402769 71402805 -146634353 - Alu SINE Alu -181 121 86 1436 162 0 9 chr3 71402805 71403027 -146634131 - AluJo SINE Alu -92 220 1 307 118 20 20 chr3 71403027 71403078 -146634080 - MLT1A1 LTR MaLR -314 51 1 486 196 120 8 chr3 71404862 71404995 -146632163 - L1ME4a LINE L1 0 6121 5974 1286 284 57 23 chr3 71406208 71406679 -146630479 - LTR33 LTR ERVL -16 505 19 1943 81 0 16 chr3 71407123 71407369 -146629789 - AluSx SINE Alu -12 300 59 2212 103 0 13 chr3 71407437 71407738 -146629420 + AluSg SINE Alu 1 297 -13 350 298 169 30 chr3 71408208 71408574 -146628584 + L2 LINE L2 2883 3299 -14 298 313 71 0 chr3 71408581 71408695 -146628463 + MIR SINE MIR 35 157 -63 277 265 61 42 chr3 71408692 71408874 -146628284 - MIR SINE MIR -1 261 15 * 2243 112 0 3 chr3 71409120 71409423 -146627735 - AluSg SINE Alu -8 302 1 343 253 44 0 chr3 71409836 71409927 -146627231 + MIR SINE MIR 85 179 -83 1854 150 7 7 chr3 71410018 71410311 -146626847 - AluSx SINE Alu -9 303 11 243 170 43 0 chr3 71410829 71410876 -146626282 + L2 LINE L2 3224 3272 0 1706 140 52 197 chr3 71411711 71411839 -146625319 + L1MC3 LINE L1 6707 6852 -933 444 51 0 0 chr3 71411839 71411898 -146625260 + (CA)n Simple_repeat Simple_repeat 1 59 0 1706 140 52 197 chr3 71411898 71412272 -146624886 + L1MC3 LINE L1 6852 7117 -668 1875 140 3 47 chr3 71412272 71412594 -146624564 - AluJo SINE Alu -4 308 1 1706 140 52 197 chr3 71412594 71412670 -146624488 + L1MC3 LINE L1 7117 7202 -583 * 5553 119 89 35 chr3 71412654 71413370 -146623788 + L1MA9 LINE L1 5044 5839 -473 1782 158 45 3 chr3 71413370 71413662 -146623496 + AluSx SINE Alu 1 304 -8 5553 119 89 35 chr3 71413662 71414164 -146622994 + L1MA9 LINE L1 5839 6312 0 878 227 0 0 chr3 71414168 71414340 -146622818 + L1MC3 LINE L1 7614 7785 0 1721 152 51 4 chr3 71415215 71415491 -146621667 - AluJb SINE Alu -6 306 18 663 213 35 0 chr3 71415888 71416029 -146621129 - L1MD2 LINE L1 -13 6346 6201 990 189 112 54 chr3 71416036 71416132 -146621026 - L1MD2 LINE L1 -217 6142 6053 2295 90 3 7 chr3 71416132 71416431 -146620727 + AluSc SINE Alu 1 298 -11 990 189 112 54 chr3 71416431 71416593 -146620565 - L1MD2 LINE L1 -306 6053 5869 31 76 0 0 chr3 71416593 71416659 -146620499 + AT_rich Low_complexity Low_complexity 1 66 0 256 235 0 0 chr3 71417654 71417705 -146619453 - L2 LINE L2 -12 3260 3210 180 329 0 0 chr3 71418228 71418298 -146618860 + MIR SINE MIR 180 249 -13 535 248 136 105 chr3 71418352 71418615 -146618543 - MLT1J2 LTR MaLR -10 440 186 2135 100 3 7 chr3 71418615 71418933 -146618225 - AluSx SINE Alu 0 312 12 535 248 136 105 chr3 71418933 71418958 -146618200 - MLT1J2 LTR MaLR -264 186 163 1961 133 0 20 chr3 71418958 71419258 -146617900 - AluJo SINE Alu -18 294 1 535 248 136 105 chr3 71419258 71419395 -146617763 - MLT1J2 LTR MaLR -287 163 1 363 356 107 0 chr3 71419584 71419761 -146617397 + MIR SINE MIR 67 262 0 333 0 0 0 chr3 71420010 71420047 -146617111 + (CA)n Simple_repeat Simple_repeat 1 37 0 390 21 0 0 chr3 71420103 71420150 -146617008 + (CA)n Simple_repeat Simple_repeat 1 47 0 324 319 72 14 chr3 71420701 71420839 -146616319 + MIR SINE MIR 117 262 0 586 306 45 8 chr3 71421726 71421971 -146615187 - MER102b DNA MER1_type -2 339 86 1644 184 10 10 chr3 71422162 71422455 -146614703 - AluJb SINE Alu -15 297 5 577 173 8 8 chr3 71423323 71423456 -146613702 + CT-rich Low_complexity Low_complexity 2 134 0 21 0 0 0 chr3 71423923 71423944 -146613214 + AT_rich Low_complexity Low_complexity 1 21 0 460 304 31 37 chr3 71424123 71424284 -146612874 + MIR SINE MIR 46 205 -57 2098 140 3 3 chr3 71426697 71426997 -146610161 - AluSx SINE Alu -11 301 2 1396 219 6 28 chr3 71427125 71427248 -146609910 + AluJo SINE Alu 1 125 -187 2253 76 0 13 chr3 71427248 71427552 -146609606 - AluY SINE Alu -11 300 1 1396 219 6 28 chr3 71427552 71427747 -146609411 + AluJo SINE Alu 125 312 0 259 356 37 0 chr3 71428488 71428623 -146608535 - MER102a DNA MER1_type -1 329 190 414 264 0 41 chr3 71428632 71428753 -146608405 - L2 LINE L2 0 3313 3198 2704 138 22 75 chr3 71428754 71429242 -146607916 - L1MA8 LINE L1 0 6291 5833 581 171 0 93 chr3 71429242 71429371 -146607787 - FLAM_C SINE Alu -15 118 2 2704 138 22 75 chr3 71429371 71429426 -146607732 - L1MA8 LINE L1 -458 5833 5777 1974 160 39 9 chr3 71429426 71429762 -146607396 + L1MB5 LINE L1 5792 6125 -59 1781 159 7 26 chr3 71429762 71430070 -146607088 + AluJb SINE Alu 1 302 -10 1974 160 39 9 chr3 71430070 71430115 -146607043 + L1MB5 LINE L1 6125 6167 -17 238 247 25 25 chr3 71430303 71430384 -146606774 - L2 LINE L2 -1252 2062 1982 258 32 0 0 chr3 71430691 71430722 -146606436 + (CAT)n Simple_repeat Simple_repeat 2 32 0 2364 68 27 3 chr3 71430748 71431044 -146606114 + AluY SINE Alu 1 303 -8 670 246 106 14 chr3 71431227 71431434 -146605724 - MIR SINE MIR -3 259 34 307 214 0 0 chr3 71431959 71432015 -146605143 - AluSq/x SINE Alu -196 107 52 608 246 0 37 chr3 71432348 71432535 -146604623 + G-rich Low_complexity Low_complexity 1 180 0 230 365 113 26 chr3 71433631 71433861 -146603297 + L2 LINE L2 2398 2647 -667 180 0 0 0 chr3 71435296 71435316 -146601842 + (CAAAG)n Simple_repeat Simple_repeat 1 20 0 2242 135 0 0 chr3 71435747 71436051 -146601107 - AluSx SINE Alu -8 304 1 29 0 0 0 chr3 71436702 71436731 -146600427 + AT_rich Low_complexity Low_complexity 1 29 0 2397 93 0 6 chr3 71436731 71437044 -146600114 - AluY SINE Alu 0 311 1 1076 65 58 0 chr3 71437407 71437545 -146599613 - L1PB2 LINE L1 -7 6144 5999 29 0 0 0 chr3 71437693 71437722 -146599436 + AT_rich Low_complexity Low_complexity 1 29 0 4874 106 32 0 chr3 71437722 71438460 -146598698 - L1PB2 LINE L1 -165 5986 5226 21 0 0 0 chr3 71438511 71438532 -146598626 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr3 71439482 71439504 -146597654 + (TG)n Simple_repeat Simple_repeat 1 22 0 1991 169 63 39 chr3 71439787 71439967 -146597191 + MSTB LTR MaLR 3 177 -249 2399 28 41 14 chr3 71439967 71440258 -146596900 + AluY SINE Alu 1 299 -12 1991 169 63 39 chr3 71440258 71440491 -146596667 + MSTB LTR MaLR 177 426 0 201 267 23 81 chr3 71440532 71440618 -146596540 - L2 LINE L2 -262 3010 2930 326 289 94 19 chr3 71440634 71440793 -146596365 + L3 LINE CR1 1214 1384 -193 231 232 0 14 chr3 71440884 71440953 -146596205 + (TA)n Simple_repeat Simple_repeat 1 68 0 541 287 120 0 chr3 71440953 71441120 -146596038 - MIR SINE MIR -72 190 4 569 285 15 0 chr3 71441141 71441271 -146595887 + L3 LINE CR1 1439 1570 -7 557 251 19 47 chr3 71443887 71444102 -146593056 + MER74B LTR ERVL 414 622 0 683 261 82 0 chr3 71444276 71444471 -146592687 - MIR SINE MIR -49 213 3 768 153 0 69 chr3 71445750 71445881 -146591277 + FLAM_A SINE Alu 1 122 -11 234 156 0 0 chr3 71445886 71445931 -146591227 + (CATA)n Simple_repeat Simple_repeat 2 46 0 328 241 35 35 chr3 71446256 71446372 -146590786 + MLT1F1 LTR MaLR 2 117 -450 3107 162 18 31 chr3 71446379 71446984 -146590174 + L1MC3 LINE L1 7189 7785 0 795 249 97 21 chr3 71447656 71447893 -146589265 - MIR SINE MIR -3 259 5 245 313 0 0 chr3 71447914 71447981 -146589177 + (TATG)n Simple_repeat Simple_repeat 2 68 0 28 29 0 0 chr3 71448537 71448572 -146588586 + AT_rich Low_complexity Low_complexity 1 35 0 213 154 0 0 chr3 71448994 71449033 -146588125 + (CA)n Simple_repeat Simple_repeat 2 40 0 281 370 58 11 chr3 71449545 71449734 -146587424 + L2 LINE L2 2545 2742 -572 522 311 123 5 chr3 71450010 71450222 -146586936 - MIR SINE MIR -24 238 2 291 362 48 64 chr3 71450905 71451056 -146586102 + MIR SINE MIR 4 153 -109 1593 203 57 14 chr3 71451056 71451406 -146585752 + MLT1A1 LTR MaLR 1 365 0 291 362 48 64 chr3 71451406 71451442 -146585716 + MIR SINE MIR 153 188 -74 249 57 0 0 chr3 71451470 71451505 -146585653 + (CA)n Simple_repeat Simple_repeat 2 36 0 515 257 35 35 chr3 71452494 71452665 -146584493 - MLT1F1 LTR MaLR -8 534 364 1773 212 48 0 chr3 71453013 71453371 -146583787 - MLT1F1 LTR MaLR -188 379 5 370 256 86 8 chr3 71455108 71455225 -146581933 - L1ME4a LINE L1 -29 6092 5967 436 216 39 33 chr3 71455310 71455463 -146581695 - L1ME4a LINE L1 -1 6120 5967 215 327 131 13 chr3 71456142 71456295 -146580863 + MIR SINE MIR 62 232 -30 221 287 59 59 chr3 71456872 71457008 -146580150 + MIR SINE MIR 51 186 -76 219 321 47 78 chr3 71458966 71459159 -146577999 + MIR SINE MIR 37 223 -39 240 287 7 91 chr3 71459477 71459620 -146577538 + MER5B DNA MER1_type 2 132 -46 318 247 72 93 chr3 71459862 71460060 -146577098 - L1MC4a LINE L1 -109 6012 5807 1918 207 21 40 chr3 71460060 71460481 -146576677 - MLT2D LTR ERVL -1 413 1 318 247 72 93 chr3 71460481 71460588 -146576570 - L1MC4a LINE L1 -314 5807 5699 2326 108 0 0 chr3 71460772 71461077 -146576081 - AluSq SINE Alu -8 305 1 2306 128 0 0 chr3 71461696 71462008 -146575150 - AluSx SINE Alu 0 312 1 1378 138 43 0 chr3 71462176 71462386 -146574772 - MER20 DNA MER1_type 0 219 1 208 319 43 32 chr3 71463183 71463277 -146573881 + L3b LINE CR1 1357 1451 -132 6764 211 38 20 chr3 71463851 71465384 -146571774 - L1 LINE L1 -2538 4250 2652 216 0 0 0 chr3 71465384 71465408 -146571750 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6764 211 38 20 chr3 71465408 71465831 -146571327 - L1 LINE L1 -4136 2652 2238 2077 145 0 3 chr3 71466030 71466340 -146570818 - AluSg1 SINE Alu 0 309 1 319 208 31 62 chr3 71466506 71466602 -146570556 - MLT1J LTR MaLR -205 306 214 1221 202 19 0 chr3 71466831 71467044 -146570114 - U3 snRNA snRNA 0 217 1 335 342 104 29 chr3 71467044 71467360 -146569798 + L2 LINE L2 2638 2977 -337 268 336 77 21 chr3 71468685 71468828 -146568330 - L2 LINE L2 -10 3262 3112 325 350 64 14 chr3 71469056 71469196 -146567962 + L3 LINE CR1 1385 1531 -46 3487 164 54 43 chr3 71469282 71470044 -146567114 + L1MB4 LINE L1 5405 6174 -6 6358 105 40 2 chr3 71470123 71471056 -146566102 - L1MA2 LINE L1 0 6304 5337 378 252 16 8 chr3 71471621 71471744 -146565414 - LTR16C LTR ERVL 0 491 368 909 201 38 11 chr3 71472558 71472742 -146564416 + MER5A DNA MER1_type 1 189 0 1284 204 93 56 chr3 71472865 71473315 -146563843 - MLT1C LTR MaLR 0 467 1 192 125 0 0 chr3 71473818 71473850 -146563308 + (TGGGGG)n Simple_repeat Simple_repeat 6 37 0 272 185 309 0 chr3 71473974 71474055 -146563103 + MER91C DNA MER1_type 35 140 0 184 291 36 0 chr3 71475722 71475777 -146561381 + L2 LINE L2 3254 3310 -3 255 257 0 43 chr3 71475778 71475848 -146561310 - L2 LINE L2 -20 3293 3227 1599 184 9 19 chr3 71476032 71476347 -146560811 + AluJb SINE Alu 1 312 0 201 39 0 0 chr3 71476350 71476376 -146560782 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 290 326 102 0 chr3 71478609 71478707 -146558451 + L2 LINE L2 3200 3307 -6 227 314 12 23 chr3 71478878 71478964 -146558194 - L2 LINE L2 -5 3308 3224 621 251 83 80 chr3 71479206 71479544 -146557614 - MLT1I LTR MaLR 0 409 71 394 316 114 90 chr3 71480869 71481245 -146555913 - L2 LINE L2 -16 3256 2872 2541 70 3 0 chr3 71482170 71482482 -146554676 + AluSp SINE Alu 1 313 0 241 211 26 79 chr3 71482518 71482594 -146554564 + MLT1K LTR MaLR 177 248 -340 189 0 0 0 chr3 71482857 71482878 -146554280 + (TTA)n Simple_repeat Simple_repeat 2 22 0 273 268 103 31 chr3 71483552 71483649 -146553509 + MER5A DNA MER1_type 86 189 0 1712 154 93 43 chr3 71483947 71484090 -146553068 + LTR28 LTR ERV1 2 136 -884 2114 125 16 19 chr3 71484090 71484403 -146552755 - AluSx SINE Alu 0 312 1 1712 154 93 43 chr3 71484403 71484583 -146552575 + LTR28 LTR ERV1 136 341 -679 559 210 52 14 chr3 71484738 71484931 -146552227 + LTR27 LTR ERV1 328 501 0 342 279 8 66 chr3 71484985 71485107 -146552051 + MER5A DNA MER1_type 7 121 -68 2775 26 0 0 chr3 71485330 71485641 -146551517 - AluY SINE Alu 0 311 1 530 272 38 0 chr3 71485641 71485825 -146551333 - MIR SINE MIR -19 243 53 1296 157 50 110 chr3 71486308 71486608 -146550550 - AluJo SINE Alu -30 282 1 526 220 8 17 chr3 71486946 71487064 -146550094 + L2 LINE L2 3197 3313 0 934 155 144 16 chr3 71487370 71487412 -146549746 + MER20 DNA MER1_type 1 36 -183 4584 116 36 19 chr3 71487412 71488130 -146549028 - L1MB2 LINE L1 -2 6169 5440 934 155 144 16 chr3 71488130 71488281 -146548877 + MER20 DNA MER1_type 36 219 0 23 0 0 0 chr3 71488745 71488768 -146548390 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr3 71489618 71489642 -146547516 + AT_rich Low_complexity Low_complexity 1 24 0 292 287 100 20 chr3 71489981 71490131 -146547027 + MER117 DNA MER1_type 32 193 -4 198 0 0 0 chr3 71493028 71493050 -146544108 + (A)n Simple_repeat Simple_repeat 1 22 0 282 226 65 0 chr3 71494563 71494625 -146542533 + MER91A DNA MER1_type 2 67 -129 310 233 0 0 chr3 71495578 71495638 -146541520 + L1ME3 LINE L1 5555 5614 -556 338 214 83 0 chr3 71495646 71495730 -146541428 - L1ME LINE L1 -442 5720 5630 * 544 264 46 2 chr3 71495720 71495906 -146541252 + L1ME3 LINE L1 5601 5795 -367 * 2453 237 62 51 chr3 71495900 71496770 -146540388 + L1MC4 LINE L1 6792 7671 -371 3303 134 45 8 chr3 71496799 71497306 -146539852 + MER1A DNA MER1_type 2 527 -2 804 238 44 69 chr3 71497308 71497670 -146539488 + L1MC4 LINE L1 7690 8042 0 817 201 39 22 chr3 71497723 71497902 -146539256 + MER20 DNA MER1_type 38 219 0 1081 231 140 12 chr3 71497902 71498231 -146538927 + L1ME3 LINE L1 5789 6159 -3 1987 136 0 0 chr3 71498255 71498571 -146538587 + AluJb SINE Alu 1 316 0 387 340 108 21 chr3 71499514 71499995 -146537163 + L2 LINE L2 2769 3310 -3 208 282 89 0 chr3 71500374 71500498 -146536660 + MIR SINE MIR 69 203 -59 821 169 82 60 chr3 71500830 71501013 -146536145 + MER58A DNA MER1_type 1 187 -37 1254 163 75 21 chr3 71502119 71502358 -146534800 + AluJo SINE Alu 3 254 -58 991 217 66 9 chr3 71502561 71502773 -146534385 + MER58A DNA MER1_type 1 224 0 268 303 214 0 chr3 71503129 71503274 -146533884 + MER5A DNA MER1_type 12 187 -2 1298 149 23 5 chr3 71503369 71503584 -146533574 - MER20 DNA MER1_type 0 219 1 316 272 97 38 chr3 71505144 71505393 -146531765 - L2 LINE L2 -262 3051 2789 1053 53 15 0 chr3 71505409 71505541 -146531617 + AluY SINE Alu 173 306 -5 483 256 98 18 chr3 71505573 71505778 -146531380 + MIR SINE MIR 6 222 -40 911 234 108 20 chr3 71506167 71506462 -146530696 + L1ME3A LINE L1 5831 6151 -19 222 323 38 15 chr3 71507019 71507152 -146530006 + (TGGA)n Simple_repeat Simple_repeat 3 138 0 911 185 54 0 chr3 71507194 71507399 -146529759 + L1P LINE L1 5117 5332 -814 4000 211 72 15 chr3 71507408 71508231 -146528927 + L1PA13 LINE L1 1 870 -5917 901 280 42 14 chr3 71508255 71508544 -146528614 + L1PA13 LINE L1 962 1258 -5529 22161 167 15 15 chr3 71508547 71513944 -146523214 + L1PA13 LINE L1 1396 6811 -3 5586 122 9 6 chr3 71513938 71514784 -146522374 + L1PA16 LINE L1 5317 6165 -1 * 210 256 25 74 chr3 71514955 71515076 -146522082 - MIR SINE MIR -61 147 33 210 274 145 0 chr3 71515151 71515213 -146521945 - MER5A DNA MER1_type -109 80 10 810 191 73 55 chr3 71516063 71516283 -146520875 - MER96B DNA MER1_type? -186 231 8 408 279 88 20 chr3 71516911 71517058 -146520100 + MER5A DNA MER1_type 10 166 -23 350 275 58 14 chr3 71517635 71517773 -146519385 + L1ME LINE L1 5524 5667 -454 705 200 87 7 chr3 71517881 71518031 -146519127 + MER46A DNA MER2_type 1 162 -74 15160 135 30 4 chr3 71518033 71520380 -146516778 + Tigger1 DNA MER2_type 6 2414 -4 505 178 30 20 chr3 71520362 71520463 -146516695 + MER46A DNA MER2_type 135 236 0 * 275 187 0 132 chr3 71521097 71521130 -146516028 + MIR SINE MIR 67 103 -159 2284 113 0 0 chr3 71521130 71521432 -146515726 - AluSg SINE Alu -8 302 1 275 187 0 132 chr3 71521432 71521489 -146515669 + MIR SINE MIR 103 145 -117 742 241 13 46 chr3 71521521 71521758 -146515400 - L2 LINE L2 -3 3310 3082 349 304 51 19 chr3 71521979 71522137 -146515021 - MIR SINE MIR -19 243 81 2065 128 10 3 chr3 71523022 71523320 -146513838 + AluSg SINE Alu 1 300 -10 219 36 0 0 chr3 71523410 71523438 -146513720 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1187 129 18 76 chr3 71523479 71523703 -146513455 - MER20 DNA MER1_type -5 214 4 355 310 11 69 chr3 71523768 71523942 -146513216 + MIR SINE MIR 60 223 -39 311 217 209 0 chr3 71524579 71524694 -146512464 + MIR SINE MIR 12 150 -112 314 253 25 0 chr3 71524887 71524966 -146512192 - MIR SINE MIR -122 140 60 764 208 23 12 chr3 71525261 71525434 -146511724 + MER5B DNA MER1_type 4 178 0 386 295 102 8 chr3 71526554 71526798 -146510360 + L2 LINE L2 2879 3145 -168 614 166 230 0 chr3 71526867 71527006 -146510152 + LTR33 LTR ERVL 101 271 -250 318 191 48 0 chr3 71527011 71527074 -146510084 + LTR33 LTR ERVL 449 514 -7 435 245 10 0 chr3 71527080 71527178 -146509980 + L2 LINE L2 3174 3272 0 224 191 16 32 chr3 71528707 71528770 -146508388 - MIR SINE MIR -133 129 68 919 193 9 73 chr3 71528993 71529211 -146507947 - MER20 DNA MER1_type 0 219 16 345 125 0 0 chr3 71530251 71530307 -146506851 + (CA)n Simple_repeat Simple_repeat 1 56 0 386 272 20 27 chr3 71530879 71531026 -146506132 - MER5A DNA MER1_type 0 189 44 461 204 181 59 chr3 71531422 71531726 -146505432 + L1ME4a LINE L1 5734 6074 -47 1421 296 69 18 chr3 71532695 71533245 -146503913 + MLT1K LTR MaLR 10 587 -1 661 288 152 52 chr3 71534037 71534624 -146502534 + L2 LINE L2 2592 3233 -39 717 285 40 4 chr3 71534624 71534873 -146502285 - MIR SINE MIR 0 262 5 661 288 152 52 chr3 71534873 71534917 -146502241 + L2 LINE L2 3233 3271 -1 234 319 128 14 chr3 71535510 71535651 -146501507 + MIR SINE MIR 17 173 -89 982 256 32 4 chr3 71535776 71536026 -146501132 + MIR SINE MIR 6 262 0 2063 155 3 0 chr3 71536855 71537164 -146499994 - AluSx SINE Alu -2 310 1 492 293 8 84 chr3 71537323 71537562 -146499596 - MIR SINE MIR -30 232 12 417 200 0 0 chr3 71537658 71537743 -146499415 - MER3 DNA MER1_type 0 209 125 580 198 60 0 chr3 71537749 71537865 -146499293 + MER3 DNA MER1_type 85 207 -2 364 307 66 12 chr3 71538167 71538333 -146498825 - MER5A DNA MER1_type -8 181 7 329 231 0 51 chr3 71538674 71538752 -146498406 + Charlie8 DNA MER1_type 105 178 -2239 781 277 16 21 chr3 71538768 71539010 -146498148 + MIR SINE MIR 14 254 -8 287 222 0 0 chr3 71539031 71539085 -146498073 + Charlie8 DNA MER1_type 192 245 -2172 279 125 0 0 chr3 71539219 71539267 -146497891 - MER5C DNA MER1_type -5 319 272 39 38 0 0 chr3 71539597 71539650 -146497508 + AT_rich Low_complexity Low_complexity 1 53 0 1027 191 0 0 chr3 71539650 71539828 -146497330 - AluJo SINE Alu -10 302 125 363 134 47 24 chr3 71539828 71539955 -146497203 + (TA)n Simple_repeat Simple_repeat 2 131 0 876 113 0 16 chr3 71539956 71540080 -146497078 - AluJo SINE Alu -190 122 1 1061 173 53 14 chr3 71540357 71540565 -146496593 - MLT1A1 LTR MaLR -149 216 1 1004 247 66 11 chr3 71540641 71540928 -146496230 + LTR16A1 LTR ERVL 155 457 0 2322 75 3 3 chr3 71541016 71541311 -146495847 + AluY SINE Alu 1 295 -16 539 257 71 14 chr3 71542563 71542773 -146494385 - MIR SINE MIR -30 232 11 511 284 100 19 chr3 71542773 71543044 -146494114 + L2 LINE L2 2995 3287 -26 1706 224 20 6 chr3 71543125 71543482 -146493676 + MLT1A1 LTR MaLR 1 362 -3 492 293 114 51 chr3 71543713 71544064 -146493094 + MLT1K LTR MaLR 17 389 -199 189 0 0 0 chr3 71544524 71544545 -146492613 + (T)n Simple_repeat Simple_repeat 1 21 0 561 239 0 0 chr3 71544806 71544923 -146492235 + MIR SINE MIR 44 160 -102 209 333 0 0 chr3 71545065 71545128 -146492030 + CT-rich Low_complexity Low_complexity 1 63 0 659 297 46 17 chr3 71547422 71547661 -146489497 + MLT1K LTR MaLR 325 570 -18 407 285 47 35 chr3 71548278 71548450 -146488708 + Charlie8 DNA MER1_type 103 276 -2141 4635 169 35 35 chr3 71548557 71548812 -146488346 + L1MB7 LINE L1 4729 4983 -1201 2284 100 0 23 chr3 71548812 71549113 -146488045 + AluY SINE Alu 1 294 -17 4635 169 35 35 chr3 71549113 71549421 -146487737 + L1MB7 LINE L1 4983 5290 -894 2076 167 0 0 chr3 71549421 71549733 -146487425 + AluSx SINE Alu 1 312 0 4635 169 35 35 chr3 71549733 71550590 -146486568 + L1MB7 LINE L1 5290 6168 -16 184 253 53 13 chr3 71550649 71550724 -146486434 - MIR SINE MIR -108 154 77 790 269 128 37 chr3 71553937 71554441 -146482717 + L2 LINE L2 2695 3313 0 1152 243 126 38 chr3 71555335 71555498 -146481660 + MER113 DNA MER1_type? 1 148 -373 300 83 0 0 chr3 71555498 71555546 -146481612 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 1152 243 126 38 chr3 71555546 71555859 -146481299 + MER113 DNA MER1_type? 148 519 -2 180 0 0 0 chr3 71556270 71556290 -146480868 + (A)n Simple_repeat Simple_repeat 1 20 0 1596 114 147 40 chr3 71558645 71558918 -146478240 + AluSx SINE Alu 1 302 0 1670 164 25 4 chr3 71560089 71560363 -146476795 - AluJo SINE Alu -32 280 1 468 0 0 0 chr3 71560518 71560570 -146476588 + (TG)n Simple_repeat Simple_repeat 2 53 0 661 174 221 0 chr3 71562319 71562468 -146474690 - MER5A DNA MER1_type 0 189 8 1651 94 40 14 chr3 71562826 71563049 -146474109 + MER30 DNA MER1_type 2 230 0 861 238 78 124 chr3 71563513 71563997 -146473161 + MLT1J LTR MaLR 1 462 -49 256 296 183 26 chr3 71564031 71564146 -146473012 - MER5A DNA MER1_type 0 189 57 970 262 141 51 chr3 71564859 71565134 -146472024 + L2 LINE L2 2466 2715 -598 1429 184 0 53 chr3 71565134 71565462 -146471696 + AluJb SINE Alu 3 314 0 970 262 141 51 chr3 71565462 71565808 -146471350 + L2 LINE L2 2715 3159 -154 1047 205 33 19 chr3 71565808 71566023 -146471135 + MER20 DNA MER1_type 1 218 -1 970 262 141 51 chr3 71566023 71566194 -146470964 + L2 LINE L2 3159 3313 0 548 276 25 18 chr3 71566981 71567144 -146470014 + MIR SINE MIR 28 191 -71 1712 177 105 3 chr3 71567235 71567568 -146469590 + MLT1B LTR MaLR 1 367 -23 1928 211 15 10 chr3 71567757 71568150 -146469008 + MER63 DNA MER1_type 658 1052 -8 363 321 21 21 chr3 71568786 71568926 -146468232 + MIR SINE MIR 52 191 -71 26 50 0 0 chr3 71570296 71570336 -146466822 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr3 71570395 71570416 -146466742 + AT_rich Low_complexity Low_complexity 1 21 0 267 300 118 0 chr3 71570505 71570615 -146466543 - MLT1L LTR MaLR -146 469 347 308 248 74 41 chr3 71570722 71570843 -146466315 - MLT1J LTR MaLR -378 133 9 4537 175 40 17 chr3 71571637 71571681 -146465477 - L1MB4 LINE L1 0 6180 6139 2481 78 13 3 chr3 71571681 71571988 -146465170 - AluSq SINE Alu -3 310 1 4537 175 40 17 chr3 71571988 71572848 -146464310 - L1MB4 LINE L1 -41 6139 5245 648 245 61 58 chr3 71572899 71573160 -146463998 - MLT1I LTR MaLR -147 262 1 3012 158 26 133 chr3 71573221 71573519 -146463639 + MER82 DNA MER2_type 5 183 -470 2148 107 4 0 chr3 71573519 71573931 -146463227 - AluSp SINE Alu 0 413 1 3012 158 26 133 chr3 71573931 71574355 -146462803 + MER82 DNA MER2_type 183 651 -2 254 329 59 0 chr3 71574372 71574457 -146462701 - MIR SINE MIR -172 90 1 1197 163 59 5 chr3 71574863 71575084 -146462074 - L1MB3 LINE L1 -9 6174 5942 2131 114 14 0 chr3 71575097 71575386 -146461772 - AluSx SINE Alu -19 293 1 180 0 0 0 chr3 71577058 71577078 -146460080 + (A)n Simple_repeat Simple_repeat 1 20 0 1978 129 10 13 chr3 71579434 71579737 -146457421 + AluSx SINE Alu 1 302 -10 219 36 0 0 chr3 71579827 71579855 -146457303 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1182 129 18 76 chr3 71579896 71580120 -146457038 - MER20 DNA MER1_type -5 214 4 412 315 30 59 chr3 71580185 71580388 -146456770 + MIR SINE MIR 60 256 -6 357 242 194 0 chr3 71580987 71581111 -146456047 + MIR SINE MIR 3 150 -112 338 266 28 5 chr3 71581304 71581410 -146455748 - MIR SINE MIR -67 141 34 822 208 23 12 chr3 71581678 71581851 -146455307 + MER5B DNA MER1_type 4 178 0 434 305 130 9 chr3 71582941 71583256 -146453902 + L2 LINE L2 2851 3203 -110 607 166 230 0 chr3 71583283 71583422 -146453736 + LTR33 LTR ERVL 101 271 -250 316 191 48 0 chr3 71583427 71583490 -146453668 + LTR33 LTR ERVL 449 514 -7 468 245 10 0 chr3 71583496 71583594 -146453564 + L2 LINE L2 3174 3272 0 249 285 151 22 chr3 71585033 71585212 -146451946 - MIR SINE MIR -26 236 35 908 193 9 73 chr3 71585409 71585627 -146451531 - MER20 DNA MER1_type 0 219 16 571 322 110 44 chr3 71586571 71587193 -146449965 - L2 LINE L2 -11 3302 2638 1182 211 19 0 chr3 71587193 71587406 -146449752 + U3 snRNA snRNA 1 217 0 2435 124 0 29 chr3 71588099 71588446 -146448712 - MER1B DNA MER1_type 0 337 1 488 287 36 49 chr3 71589131 71589533 -146447625 + L1MC4a LINE L1 5525 5920 -246 2224 110 0 7 chr3 71589655 71589955 -146447203 + AluSq SINE Alu 1 298 -15 327 291 61 47 chr3 71591984 71592132 -146445026 - MIR SINE MIR -93 169 20 1782 161 25 3 chr3 71592303 71592589 -146444569 - AluJo SINE Alu -20 292 1 468 0 0 0 chr3 71592744 71592796 -146444362 + (TG)n Simple_repeat Simple_repeat 2 53 0 661 174 221 0 chr3 71594545 71594694 -146442464 - MER5A DNA MER1_type 0 189 8 1651 94 40 14 chr3 71595052 71595275 -146441883 + MER30 DNA MER1_type 2 230 0 861 238 78 124 chr3 71595739 71596223 -146440935 + MLT1J LTR MaLR 1 462 -49 256 296 183 26 chr3 71596257 71596372 -146440786 - MER5A DNA MER1_type 0 189 57 970 262 141 51 chr3 71597085 71597360 -146439798 + L2 LINE L2 2466 2715 -598 1462 185 0 50 chr3 71597360 71597687 -146439471 + AluJb SINE Alu 3 314 0 970 262 141 51 chr3 71597687 71598033 -146439125 + L2 LINE L2 2715 3159 -154 1047 205 33 19 chr3 71598033 71598248 -146438910 + MER20 DNA MER1_type 1 218 -1 970 262 141 51 chr3 71598248 71598419 -146438739 + L2 LINE L2 3159 3313 0 548 276 25 18 chr3 71599206 71599369 -146437789 + MIR SINE MIR 28 191 -71 1712 177 105 3 chr3 71599460 71599793 -146437365 + MLT1B LTR MaLR 1 367 -23 1928 211 15 10 chr3 71599982 71600375 -146436783 + MER63 DNA MER1_type 659 1053 -8 363 321 21 21 chr3 71601024 71601164 -146435994 + MIR SINE MIR 52 191 -71 26 50 0 0 chr3 71602534 71602574 -146434584 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr3 71602633 71602654 -146434504 + AT_rich Low_complexity Low_complexity 1 21 0 267 300 118 0 chr3 71602743 71602853 -146434305 - MLT1L LTR MaLR -146 469 347 308 248 74 41 chr3 71602960 71603081 -146434077 - MLT1J LTR MaLR -378 133 9 4537 175 40 17 chr3 71603875 71603919 -146433239 - L1MB4 LINE L1 0 6180 6139 2472 81 13 3 chr3 71603919 71604226 -146432932 - AluSq SINE Alu -3 310 1 4537 175 40 17 chr3 71604226 71605086 -146432072 - L1MB4 LINE L1 -41 6139 5245 648 245 61 58 chr3 71605137 71605398 -146431760 - MLT1I LTR MaLR -147 262 1 1553 152 3 73 chr3 71605459 71605762 -146431396 + MER82 DNA MER2_type 5 286 -367 614 81 0 10 chr3 71605762 71605861 -146431297 + (TTTC)n Simple_repeat Simple_repeat 2 99 0 2131 129 3 3 chr3 71605863 71606174 -146430984 - AluSp SINE Alu -2 311 1 1538 218 55 6 chr3 71606174 71606486 -146430672 + MER82 DNA MER2_type 270 596 -57 671 152 9 27 chr3 71606486 71606598 -146430560 + MER82 DNA MER2_type 542 651 -2 193 360 47 12 chr3 71606615 71606701 -146430457 - MIR3 SINE MIR -117 91 3 1217 158 59 5 chr3 71607106 71607327 -146429831 - L1MB3 LINE L1 -9 6174 5942 2159 113 14 0 chr3 71607340 71607632 -146429526 - AluSx SINE Alu -16 296 1 188 220 143 22 chr3 71608808 71608874 -146428284 - L2 LINE L2 -314 2958 2877 1529 212 107 22 chr3 71608874 71609001 -146428157 + MSTD LTR MaLR 3 118 -278 1649 172 3 45 chr3 71609001 71609315 -146427843 + AluJb SINE Alu 1 301 -11 1529 212 107 22 chr3 71609315 71609550 -146427608 + MSTD LTR MaLR 118 396 0 188 220 143 22 chr3 71609550 71609574 -146427584 - L2 LINE L2 -395 2877 2857 200 292 0 0 chr3 71609687 71609752 -146427406 + A-rich Low_complexity Low_complexity 1 65 0 508 263 60 30 chr3 71609764 71610030 -146427128 + L1M4 LINE L1 2128 2401 -3745 269 268 78 7 chr3 71610280 71610422 -146426736 + L1M4 LINE L1 2455 2606 -3540 204 336 48 32 chr3 71610755 71610880 -146426278 + MIR3 SINE MIR 82 208 0 475 239 36 54 chr3 71611032 71611199 -146425959 - MIR SINE MIR -91 171 8 1286 174 40 69 chr3 71611278 71611582 -146425576 - AluJo SINE Alu -17 295 1 308 91 0 0 chr3 71612195 71612239 -146424919 - MADE1 DNA Mariner -36 44 1 218 216 0 39 chr3 71612272 71612323 -146424835 - L2 LINE L2 -20 3252 3204 1600 249 40 18 chr3 71612578 71613027 -146424131 - L1ME1 LINE L1 -5 6161 5703 361 333 75 11 chr3 71613064 71613238 -146423920 - MIR SINE MIR -65 197 13 203 222 22 0 chr3 71613454 71613499 -146423659 + L2 LINE L2 3268 3313 0 198 237 0 0 chr3 71613969 71614007 -146423151 + MIR SINE MIR 36 73 -135 286 340 112 5 chr3 71614956 71615144 -146422014 - MIR SINE MIR -6 256 49 940 232 28 0 chr3 71615183 71615364 -146421794 - MER5A DNA MER1_type -1 188 3 315 307 0 23 chr3 71615396 71615484 -146421674 + L2 LINE L2 2997 3082 -231 962 236 15 5 chr3 71615492 71615695 -146421463 + MER58A DNA MER1_type 19 223 -1 583 198 24 16 chr3 71615786 71615912 -146421246 + L2 LINE L2 3184 3310 -3 261 281 30 38 chr3 71616281 71616404 -146420754 + MIR SINE MIR 8 125 -83 325 293 79 29 chr3 71616454 71616594 -146420564 - L2 LINE L2 -5 3308 3162 181 349 101 0 chr3 71616929 71617038 -146420120 + L2 LINE L2 2977 3096 -217 216 0 0 0 chr3 71617064 71617088 -146420070 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 190 261 43 29 chr3 71617098 71617167 -146419991 + MIR SINE MIR 183 252 -10 457 279 64 20 chr3 71617177 71617381 -146419777 + L2 LINE L2 3101 3313 0 827 302 13 4 chr3 71618239 71618474 -146418684 + MIR SINE MIR 16 252 -10 220 311 167 8 chr3 71618493 71618625 -146418533 - MIR SINE MIR -109 153 1 522 301 57 47 chr3 71619035 71619331 -146417827 - L2 LINE L2 -10 3303 3005 355 272 71 65 chr3 71620058 71620242 -146416916 - MER20B DNA MER1_type -594 189 5 341 270 98 60 chr3 71620245 71620428 -146416730 + L1ME4a LINE L1 5792 5994 -127 2336 106 60 20 chr3 71620428 71620778 -146416380 + THE1B LTR MaLR 1 364 0 341 270 98 60 chr3 71620778 71620912 -146416246 + L1ME4a LINE L1 5994 6121 0 212 211 0 0 chr3 71621105 71621143 -146416015 + L2 LINE L2 3268 3305 -8 1028 154 44 11 chr3 71621234 71621416 -146415742 + MER20 DNA MER1_type 31 218 -1 1742 138 60 13 chr3 71621576 71621874 -146415284 + AluJo SINE Alu 1 312 0 556 301 89 51 chr3 71623522 71623838 -146413320 - MER102a DNA MER1_type 0 330 3 1967 121 11 2 chr3 71623901 71624293 -146412865 - L1PA13 LINE L1 -378 5777 5254 2678 107 16 0 chr3 71624296 71624670 -146412488 + L1PA13 LINE L1 5784 6163 0 2391 58 0 14 chr3 71624731 71625070 -146412088 + AluY SINE Alu 1 311 0 2488 171 58 10 chr3 71626767 71627251 -146409907 - L1MB7 LINE L1 -8 6176 5670 207 0 0 0 chr3 71627251 71627274 -146409884 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 946 135 14 14 chr3 71627274 71627422 -146409736 - AluJb SINE Alu -28 284 137 2278 99 0 3 chr3 71627422 71627716 -146409442 - AluSg SINE Alu -17 293 1 2486 75 0 7 chr3 71627725 71628030 -146409128 - AluY SINE Alu -8 303 1 6297 196 34 25 chr3 71628030 71629440 -146407718 - L1MB7 LINE L1 -517 5667 4234 294 29 0 0 chr3 71629440 71629475 -146407683 + (TG)n Simple_repeat Simple_repeat 2 36 0 6297 196 34 25 chr3 71629475 71629855 -146407303 - L1MB7 LINE L1 -1950 4234 3859 1563 126 4 41 chr3 71630535 71630781 -146406377 + AluSx SINE Alu 48 284 -28 209 57 29 0 chr3 71630807 71630842 -146406316 + (CAA)n Simple_repeat Simple_repeat 2 37 0 482 252 69 55 chr3 71630843 71631061 -146406097 - L2 LINE L2 -14 3299 3079 252 309 44 29 chr3 71631073 71631209 -146405949 - MIR SINE MIR -29 233 96 207 0 0 0 chr3 71631365 71631388 -146405770 + (CAA)n Simple_repeat Simple_repeat 2 24 0 269 333 18 0 chr3 71632975 71633086 -146404072 - MER5A DNA MER1_type -75 114 2 2125 122 3 0 chr3 71633714 71634002 -146403156 - AluJb SINE Alu -23 289 1 222 298 96 29 chr3 71635505 71635609 -146401549 - MIR SINE MIR -66 196 86 583 168 46 6 chr3 71635701 71635874 -146401284 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 508 164 50 6 chr3 71635893 71636052 -146401106 + (TCCA)n Simple_repeat Simple_repeat 4 169 0 554 169 39 13 chr3 71636070 71636224 -146400934 + (TCCA)n Simple_repeat Simple_repeat 4 161 0 264 148 74 0 chr3 71636235 71636316 -146400842 + (TCCA)n Simple_repeat Simple_repeat 4 90 0 267 103 0 0 chr3 71636333 71636372 -146400786 + (TCCA)n Simple_repeat Simple_repeat 4 42 0 210 91 0 0 chr3 71636396 71636429 -146400729 + (CCAA)n Simple_repeat Simple_repeat 4 36 0 747 303 106 25 chr3 71636437 71636797 -146400361 - L2 LINE L2 -3 3310 2922 928 290 48 3 chr3 71637643 71637936 -146399222 - LTR16C LTR ERVL 0 491 186 193 339 0 0 chr3 71638076 71638135 -146399023 - L2 LINE L2 -5 3267 3209 651 200 38 117 chr3 71638237 71638502 -146398656 + L1MC4 LINE L1 7799 8042 0 199 328 0 30 chr3 71639428 71639495 -146397663 + MIR SINE MIR 2 66 -196 180 0 0 0 chr3 71639609 71639629 -146397529 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2189 116 3 10 chr3 71639875 71640186 -146396972 - AluSq SINE Alu -4 309 1 181 237 0 0 chr3 71640351 71640389 -146396769 - MIR SINE MIR -68 140 103 488 264 63 19 chr3 71640516 71640675 -146396483 - MIR SINE MIR -10 252 87 813 311 68 37 chr3 71641731 71642206 -146394952 + L2 LINE L2 2549 3037 -235 23 33 0 0 chr3 71642391 71642421 -146394737 + AT_rich Low_complexity Low_complexity 1 30 0 948 108 0 0 chr3 71644140 71644269 -146392889 - L1PB4 LINE L1 -1 6155 6027 448 291 12 17 chr3 71644459 71644631 -146392527 + MER117 DNA MER1_type 22 192 -5 646 261 78 48 chr3 71645238 71645468 -146391690 + MIR SINE MIR 26 262 0 227 363 65 16 chr3 71645471 71645595 -146391563 - MIR3 SINE MIR -64 144 15 249 178 0 0 chr3 71645624 71645669 -146391489 + MER5A DNA MER1_type 31 75 -114 296 275 69 101 chr3 71646045 71646234 -146390924 - MIR3 SINE MIR -17 191 9 528 310 61 31 chr3 71646596 71646825 -146390333 + MIR SINE MIR 26 261 -1 426 39 0 0 chr3 71648225 71648277 -146388881 + (CA)n Simple_repeat Simple_repeat 1 52 0 282 148 37 0 chr3 71648757 71648811 -146388347 - L1M4 LINE L1 -3292 2854 2799 319 300 40 20 chr3 71648939 71649039 -146388119 - MIR SINE MIR -78 184 83 238 271 17 0 chr3 71649968 71650027 -146387131 + (CAA)n Simple_repeat Simple_repeat 2 61 0 321 293 65 24 chr3 71650027 71650150 -146387008 - MIR SINE MIR 0 262 135 370 265 76 23 chr3 71652934 71653066 -146384092 - MIR3 SINE MIR -37 171 33 373 264 0 0 chr3 71653174 71653265 -146383893 + MIR SINE MIR 47 137 -125 361 296 157 0 chr3 71653267 71653375 -146383783 - L2 LINE L2 0 3272 3148 242 235 98 0 chr3 71654168 71654232 -146382926 + MIR SINE MIR 74 144 -78 649 272 122 9 chr3 71654396 71654609 -146382549 + MIR SINE MIR 23 259 -3 449 262 71 8 chr3 71654947 71655073 -146382085 - L2 LINE L2 0 3272 3139 448 239 30 14 chr3 71656682 71656850 -146380308 - MLT1J2 LTR MaLR -19 426 266 352 218 179 26 chr3 71656898 71657054 -146380104 - MLT1J2 LTR MaLR -270 180 1 513 298 71 30 chr3 71657472 71657670 -146379488 + MIR SINE MIR 47 252 -10 359 306 21 27 chr3 71658540 71658707 -146378451 - MIR SINE MIR -48 214 50 249 33 0 0 chr3 71658746 71658776 -146378382 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 1990 255 173 22 chr3 71659285 71659707 -146377451 + L2 LINE L2 1997 2354 -959 1045 256 14 0 chr3 71659707 71659926 -146377232 + MER58A DNA MER1_type 3 224 0 1990 255 173 22 chr3 71659926 71660484 -146376674 + L2 LINE L2 2354 3129 -184 4138 198 57 5 chr3 71660488 71661509 -146375649 - L1MB7 LINE L1 -1 6183 5108 2743 197 115 30 chr3 71661531 71662622 -146374536 - L1M4 LINE L1 -4831 2024 942 1340 195 32 111 chr3 71662620 71662989 -146374169 - L1M4 LINE L1 -6509 350 11 * 460 209 0 0 chr3 71663049 71663140 -146374018 + L2 LINE L2 3223 3313 0 357 245 9 28 chr3 71663512 71663618 -146373540 + MIR SINE MIR 46 149 -113 2649 187 105 87 chr3 71663767 71664579 -146372579 - LTR1B LTR ERV1 0 826 1 2236 106 3 10 chr3 71665012 71665323 -146371835 + AluSc SINE Alu 1 309 0 342 255 248 19 chr3 71665476 71665637 -146371521 + MIR SINE MIR 55 252 -10 192 293 0 0 chr3 71665604 71665645 -146371513 + L2 LINE L2 3224 3264 -8 * 274 261 54 22 chr3 71666466 71666558 -146370600 - MIR SINE MIR -70 192 98 1623 143 40 53 chr3 71666639 71666940 -146370218 + AluJb SINE Alu 1 297 -15 834 207 37 32 chr3 71667473 71667661 -146369497 + MER5A DNA MER1_type 1 189 0 882 248 116 0 chr3 71667814 71668012 -146369146 - MER58A DNA MER1_type 0 224 4 290 291 63 16 chr3 71668025 71668152 -146369006 + Charlie8 DNA MER1_type 131 263 -2154 240 256 39 26 chr3 71668236 71668314 -146368844 + (CATG)n Simple_repeat Simple_repeat 2 80 0 309 336 34 13 chr3 71669753 71669902 -146367256 - MIR SINE MIR -109 153 2 956 230 33 5 chr3 71670046 71670259 -146366899 - MER20 DNA MER1_type 0 219 1 797 194 167 31 chr3 71670311 71670538 -146366620 + MIR SINE MIR 5 262 0 224 274 0 0 chr3 71670569 71670620 -146366538 - MIR3 SINE MIR -54 154 104 288 0 0 0 chr3 71671410 71671442 -146365716 + (TG)n Simple_repeat Simple_repeat 2 33 0 219 229 0 0 chr3 71671444 71671492 -146365666 + GA-rich Low_complexity Low_complexity 1 48 0 2127 133 10 0 chr3 71672771 71673073 -146364085 + AluSx SINE Alu 3 307 -5 840 189 15 80 chr3 71673332 71673533 -146363625 - MER5A DNA MER1_type 0 189 2 402 301 15 30 chr3 71673821 71673954 -146363204 - MIR3 SINE MIR -40 168 38 236 51 0 26 chr3 71675443 71675482 -146361676 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2300 132 119 10 chr3 71675857 71676243 -146360915 - MSTA LTR MaLR 0 428 1 226 261 125 23 chr3 71676577 71676665 -146360493 + L2 LINE L2 3184 3280 -33 1066 168 32 16 chr3 71677012 71677197 -146359961 - MER20 DNA MER1_type -2 217 30 249 273 73 45 chr3 71677261 71677371 -146359787 + MLT1K LTR MaLR 133 245 -343 434 211 291 13 chr3 71677651 71677888 -146359270 + L2 LINE L2 2944 3246 -67 183 42 0 0 chr3 71677923 71677947 -146359211 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 356 264 11 0 chr3 71678662 71678753 -146358405 - L2 LINE L2 -8 3305 3214 224 118 0 0 chr3 71678954 71678988 -146358170 + MIR SINE MIR 158 191 -71 346 256 29 73 chr3 71679497 71679578 -146357580 + MIR3 SINE MIR 77 151 -57 1026 222 42 5 chr3 71679578 71679790 -146357368 - MER58A DNA MER1_type 0 224 5 346 256 29 73 chr3 71679790 71679845 -146357313 + MIR3 SINE MIR 151 207 -1 705 343 20 8 chr3 71679927 71680181 -146356977 - MIR SINE MIR 0 262 6 230 275 44 55 chr3 71681425 71681516 -146355642 + L2 LINE L2 2977 3066 -206 428 259 152 7 chr3 71681606 71681790 -146355368 + MIR SINE MIR 18 228 -34 1264 278 65 34 chr3 71682458 71682954 -146354204 + MLT1J LTR MaLR 1 511 0 1768 187 71 8 chr3 71682980 71683333 -146353825 + MER58D DNA MER1_type 12 386 0 2258 156 19 19 chr3 71684574 71684939 -146352219 + MLT1A1 LTR MaLR 1 365 0 1540 237 42 78 chr3 71685043 71685345 -146351813 + L1ME3A LINE L1 5655 5931 -239 2327 96 0 13 chr3 71685345 71685659 -146351499 + AluY SINE Alu 1 310 -1 1540 237 42 78 chr3 71685659 71685884 -146351274 + L1ME3A LINE L1 5931 6163 -7 289 264 55 9 chr3 71686088 71686198 -146350960 - MIR SINE MIR -41 221 107 1134 223 168 57 chr3 71686317 71686770 -146350388 + MLT1D LTR MaLR 2 504 -1 369 261 42 17 chr3 71686865 71686984 -146350174 + MER103 DNA DNA 38 159 -7 275 218 0 0 chr3 71687169 71687224 -146349934 + MIR3 SINE MIR 147 201 -7 368 206 33 11 chr3 71687244 71687336 -146349822 - MER117 DNA MER1_type -47 150 57 23 33 0 0 chr3 71688069 71688099 -146349059 + AT_rich Low_complexity Low_complexity 1 30 0 548 300 167 31 chr3 71688147 71688811 -146348347 - L2 LINE L2 -2 3311 2551 767 202 29 12 chr3 71688827 71689000 -146348158 - L1ME2 LINE L1 0 6164 5989 953 290 100 27 chr3 71689020 71689571 -146347587 - L2 LINE L2 -769 2545 1955 567 290 68 6 chr3 71689582 71689758 -146347400 - MIR SINE MIR -55 207 21 241 219 85 37 chr3 71689789 71689871 -146347287 + MER103 DNA DNA 2 87 -79 245 220 20 0 chr3 71690113 71690163 -146346995 - MIR SINE MIR -119 143 93 419 312 7 19 chr3 71690950 71691104 -146346054 + MIR SINE MIR 34 185 -77 257 275 43 0 chr3 71691159 71691228 -146345930 + MER5A DNA MER1_type 45 116 -73 197 56 37 56 chr3 71691944 71691998 -146345160 + (CAAAA)n Simple_repeat Simple_repeat 4 56 0 230 303 121 61 chr3 71695266 71695563 -146341595 + L2 LINE L2 2958 3272 0 319 260 45 71 chr3 71695711 71695865 -146341293 + MIR SINE MIR 113 262 0 242 312 51 51 chr3 71695935 71696092 -146341066 - L2 LINE L2 -2 3311 3155 630 259 34 15 chr3 71696100 71696305 -146340853 + L1MC4a LINE L1 5667 5875 -1933 970 292 81 64 chr3 71696549 71696678 -146340480 + L1MEd LINE L1 521 646 -5988 1378 229 23 0 chr3 71696678 71696983 -146340175 + AluJo SINE Alu 1 312 0 970 292 81 64 chr3 71696983 71697558 -146339600 + L1MEd LINE L1 646 1237 -5397 823 277 71 20 chr3 71697736 71698073 -146339085 + L1MEd LINE L1 1447 1700 -4842 329 263 43 113 chr3 71698392 71698578 -146338580 - L2 LINE L2 -78 3194 3022 478 292 130 5 chr3 71698613 71698805 -146338353 + MIR SINE MIR 34 249 -13 335 265 34 43 chr3 71699493 71699610 -146337548 - L2 LINE L2 -8 3264 3149 589 239 68 0 chr3 71699736 71699912 -146337246 + MER117 DNA MER1_type 6 193 -4 250 122 0 0 chr3 71699915 71699956 -146337202 - MIR3 SINE MIR -47 161 121 219 203 0 0 chr3 71700818 71700877 -146336281 + GA-rich Low_complexity Low_complexity 2 60 0 2076 129 0 3 chr3 71700937 71701248 -146335910 + AluSg SINE Alu 1 310 0 240 216 0 0 chr3 71701397 71701448 -146335710 + MER113 DNA MER1_type? 9 59 -462 935 209 0 125 chr3 71701508 71701577 -146335581 + L1ME1 LINE L1 5759 5835 -331 2228 105 0 16 chr3 71701577 71701883 -146335275 + AluSq SINE Alu 1 301 -12 935 209 0 125 chr3 71701883 71702225 -146334933 + L1ME1 LINE L1 5835 6087 -79 566 275 157 8 chr3 71702473 71702709 -146334449 + MER113 DNA MER1_type? 251 521 0 284 333 151 0 chr3 71702721 71702814 -146334344 + L2 LINE L2 3160 3266 -6 240 269 269 15 chr3 71702905 71703039 -146334119 - L3 LINE CR1 -272 1305 1138 305 287 73 27 chr3 71703067 71703217 -146333941 + L1MC5 LINE L1 7645 7801 -160 1682 185 3 10 chr3 71703328 71703626 -146333532 - AluJo SINE Alu -16 296 1 2360 76 0 19 chr3 71703812 71704128 -146333030 - AluY SINE Alu -1 310 1 268 366 15 30 chr3 71704401 71704532 -146332626 - MER5A DNA MER1_type -12 166 38 201 121 0 0 chr3 71704956 71704989 -146332169 + (TC)n Simple_repeat Simple_repeat 2 34 0 380 247 0 0 chr3 71706344 71706429 -146330729 - MER117 DNA MER1_type -50 147 63 1556 192 0 17 chr3 71706451 71706758 -146330400 + AluJo SINE Alu 1 302 0 420 280 101 24 chr3 71707253 71707460 -146329698 - L2 LINE L2 -21 3292 3070 * 442 314 122 56 chr3 71707452 71708093 -146329065 + L2 LINE L2 2222 2904 -410 271 297 0 0 chr3 71708247 71708311 -146328847 + L2 LINE L2 3250 3313 0 504 282 55 12 chr3 71708471 71708634 -146328524 + MIR SINE MIR 93 262 0 288 77 0 0 chr3 71709158 71709197 -146327961 + (TAA)n Simple_repeat Simple_repeat 3 41 0 229 197 15 45 chr3 71709274 71709340 -146327818 + MLT1E LTR MaLR 57 120 -473 423 180 114 23 chr3 71709451 71709580 -146327578 + MLT1H LTR MaLR 403 547 -2 745 237 38 16 chr3 71709599 71709785 -146327373 - MIR SINE MIR -38 224 35 2323 117 45 34 chr3 71710965 71711323 -146325835 - THE1B LTR MaLR -2 362 1 288 272 0 65 chr3 71711804 71711896 -146325262 - L2 LINE L2 -1 3271 3186 287 324 267 14 chr3 71712058 71712268 -146324890 - L2 LINE L2 -4 3268 3006 548 235 215 0 chr3 71712389 71712538 -146324620 - MER5A DNA MER1_type 0 189 9 593 276 25 6 chr3 71712565 71712728 -146324430 + Charlie8 DNA MER1_type 34 199 -2218 30 0 0 0 chr3 71713803 71713833 -146323325 + AT_rich Low_complexity Low_complexity 1 30 0 351 322 68 7 chr3 71714281 71714427 -146322731 + L2 LINE L2 3118 3272 0 421 274 17 26 chr3 71714477 71714594 -146322564 + MER34 LTR ERV1 1 116 -426 * 564 233 143 67 chr3 71714563 71714998 -146322160 + LTR48B LTR ERV1 162 787 0 185 360 170 0 chr3 71717925 71718025 -146319133 - MIR SINE MIR -58 150 34 354 152 120 16 chr3 71718081 71718182 -146318976 + MER5A DNA MER1_type 4 118 -71 1003 209 60 19 chr3 71718223 71718438 -146318720 - MER58A DNA MER1_type 0 224 1 321 243 146 60 chr3 71719307 71719492 -146317666 - MIR SINE MIR -12 250 50 859 141 4 157 chr3 71719726 71719975 -146317183 - MER20 DNA MER1_type -8 211 1 440 294 181 22 chr3 71720099 71720459 -146316699 + L2 LINE L2 2561 2977 -337 273 262 143 12 chr3 71720598 71720682 -146316476 + L2 LINE L2 3209 3303 -10 744 283 45 20 chr3 71720764 71721008 -146316150 + MIR SINE MIR 13 262 0 2231 109 0 0 chr3 71722181 71722485 -146314673 - AluY SINE Alu -7 304 1 3992 227 51 61 chr3 71723566 71724385 -146312773 + L1MB7 LINE L1 14 803 -5739 240 35 0 0 chr3 71724385 71724414 -146312744 + (CA)n Simple_repeat Simple_repeat 2 30 0 3992 227 51 61 chr3 71724414 71724802 -146312356 + L1MB7 LINE L1 803 1193 -5349 * 5637 104 8 5 chr3 71724793 71725588 -146311570 - L1PA13 LINE L1 -4 6159 5363 2444 227 39 68 chr3 71725573 71726436 -146310722 + L1MB7 LINE L1 1156 1993 -4653 * 4737 174 39 14 chr3 71726430 71726822 -146310336 + L1MB7 LINE L1 5423 5804 -878 2096 114 3 13 chr3 71726822 71727121 -146310037 + AluY SINE Alu 1 296 -15 4737 174 39 14 chr3 71727121 71727937 -146309221 + L1MB7 LINE L1 5804 6672 -10 660 162 31 131 chr3 71727992 71728183 -146308975 + MIR SINE MIR 24 195 -67 512 215 115 0 chr3 71729117 71729247 -146307911 - MER103 DNA DNA -19 147 3 2113 136 0 0 chr3 71730008 71730302 -146306856 + AluSx SINE Alu 1 294 -18 653 211 64 29 chr3 71731812 71731983 -146305175 + MER5B DNA MER1_type 1 177 -1 1557 233 50 19 chr3 71733104 71733482 -146303676 + MLT1B LTR MaLR 1 390 0 2210 121 0 10 chr3 71734887 71735193 -146301965 + AluSq SINE Alu 1 303 -10 870 278 97 83 chr3 71735351 71735667 -146301491 + MLT1K LTR MaLR 1 330 -258 1327 189 55 99 chr3 71735667 71736049 -146301109 + MLT1A1 LTR MaLR 1 365 0 870 278 97 83 chr3 71736049 71736312 -146300846 + MLT1K LTR MaLR 330 588 0 364 269 126 8 chr3 71736380 71736499 -146300659 + MIR SINE MIR 22 154 -108 1083 216 25 49 chr3 71736671 71736791 -146300367 + Charlie1b DNA MER1_type 1 113 -2648 2225 99 3 7 chr3 71736791 71737094 -146300064 - AluSc SINE Alu -7 302 1 1083 216 25 49 chr3 71737094 71737218 -146299940 + Charlie1b DNA MER1_type 113 239 -284 1670 106 125 8 chr3 71737230 71737553 -146299605 + AluSg1 SINE Alu 21 373 0 30 21 0 21 chr3 71737630 71737655 -146299503 + AT_rich Low_complexity Low_complexity 1 26 -21 2129 116 3 3 chr3 71737655 71737940 -146299218 - AluSg SINE Alu -25 285 1 30 21 0 21 chr3 71737940 71737962 -146299196 + AT_rich Low_complexity Low_complexity 26 47 0 3177 160 15 42 chr3 71738986 71739581 -146297577 + L1MB3 LINE L1 5548 6126 -57 312 139 0 13 chr3 71739581 71739639 -146297519 + AluJb SINE Alu 1 47 -252 1811 143 152 12 chr3 71739639 71739968 -146297190 - THE1C LTR MaLR 0 375 1 1560 167 0 4 chr3 71739975 71740232 -146296926 + AluJb SINE Alu 50 305 -7 978 253 68 55 chr3 71740336 71740823 -146296335 + MLT1H LTR MaLR 57 549 0 334 249 96 67 chr3 71740903 71741112 -146296046 - L2 LINE L2 -8 3305 3091 513 237 160 13 chr3 71741537 71741693 -146295465 + MIR SINE MIR 14 192 -70 37 52 0 0 chr3 71741747 71741805 -146295353 + AT_rich Low_complexity Low_complexity 1 58 0 573 82 93 0 chr3 71741806 71742122 -146295036 + (TA)n Simple_repeat Simple_repeat 1 345 0 44 0 0 0 chr3 71742122 71742166 -146294992 + AT_rich Low_complexity Low_complexity 1 44 0 41 0 0 19 chr3 71742228 71742250 -146294908 + AT_rich Low_complexity Low_complexity 1 22 -29 2084 126 3 3 chr3 71742250 71742535 -146294623 + AluSg SINE Alu 1 285 -25 41 0 0 19 chr3 71742535 71742564 -146294594 + AT_rich Low_complexity Low_complexity 22 51 0 430 0 71 0 chr3 71742613 71742683 -146294475 + (TA)n Simple_repeat Simple_repeat 1 75 0 5004 166 49 22 chr3 71742692 71743586 -146293572 + MER21A LTR ERV1 14 931 0 1332 165 119 8 chr3 71743622 71743883 -146293275 - AluSg1 SINE Alu -1 308 19 250 214 56 143 chr3 71744373 71744499 -146292659 + LTR67 LTR ERVL 33 147 -410 668 154 7 44 chr3 71744761 71744897 -146292261 + LTR67 LTR ERVL 427 557 0 361 289 52 22 chr3 71744907 71745042 -146292116 - MIR SINE MIR -3 259 121 427 226 0 21 chr3 71745175 71745268 -146291890 - L2 LINE L2 -28 3285 3195 360 276 19 0 chr3 71745438 71745543 -146291615 - MER117 DNA MER1_type -89 108 2 * 1853 220 57 13 chr3 71745542 71746018 -146291140 - MLT1E2 LTR MaLR -2 624 155 1189 286 59 39 chr3 71746203 71746735 -146290423 - L2 LINE L2 -261 3052 2511 329 361 23 19 chr3 71746735 71746933 -146290225 + MIR SINE MIR 2 198 -64 2588 119 30 5 chr3 71747151 71747522 -146289636 - L1PA11 LINE L1 -2 6172 5793 1649 187 0 34 chr3 71747645 71747939 -146289219 + AluJb SINE Alu 6 289 -23 261 299 62 21 chr3 71748275 71748372 -146288786 + MIR SINE MIR 162 262 0 182 333 0 32 chr3 71750701 71750764 -146286394 - L3 LINE CR1 -1 1576 1516 199 308 0 0 chr3 71750767 71750819 -146286339 + L2 LINE L2 3219 3270 -2 2565 260 44 29 chr3 71750952 71751875 -146285283 + L1MC4 LINE L1 7106 8042 0 3923 178 57 22 chr3 71752061 71752624 -146284534 + L1MB7 LINE L1 5255 5857 -327 2200 145 47 33 chr3 71752624 71752983 -146284175 + THE1B LTR MaLR 1 364 0 3923 178 57 22 chr3 71752983 71753309 -146283849 + L1MB7 LINE L1 5857 6170 -14 2477 151 25 21 chr3 71753326 71753758 -146283400 - Tigger2a DNA MER2_type 0 434 1 841 303 107 11 chr3 71754315 71754671 -146282487 + MLT1K LTR MaLR 11 400 -188 2341 155 21 52 chr3 71754908 71755334 -146281824 + MLT2D LTR ERVL 1 413 -1 335 223 159 3 chr3 71755506 71755611 -146281547 - MIR SINE MIR -47 161 43 642 251 97 35 chr3 71756122 71756441 -146280717 + MER113 DNA MER1_type? 1 339 -182 236 287 125 15 chr3 71756823 71756959 -146280199 + MER113 DNA MER1_type? 338 488 -33 749 253 28 34 chr3 71757030 71757273 -146279885 + MIR SINE MIR 11 255 -7 232 305 16 39 chr3 71757343 71757471 -146279687 - MER102b DNA MER1_type -9 332 208 788 243 15 24 chr3 71757516 71757722 -146279436 - MIR SINE MIR -47 215 12 215 219 0 0 chr3 71757731 71757772 -146279386 - MER5A DNA MER1_type -1 188 148 290 241 284 0 chr3 71757810 71757926 -146279232 - MER5A DNA MER1_type -38 151 3 583 214 14 21 chr3 71757951 71758091 -146279067 - MER102b DNA MER1_type -163 178 40 423 244 23 46 chr3 71758203 71758334 -146278824 - L2 LINE L2 -3 3310 3183 198 208 0 0 chr3 71759068 71759121 -146278037 + (ATG)n Simple_repeat Simple_repeat 1 53 0 210 292 0 0 chr3 71759728 71759776 -146277382 + MIR SINE MIR 106 153 -109 572 279 15 23 chr3 71760167 71760340 -146276818 - MIR SINE MIR -48 214 43 765 227 0 0 chr3 71760497 71760629 -146276529 + FLAM_A SINE Alu 1 132 -1 323 333 34 45 chr3 71760823 71761000 -146276158 - MER5A DNA MER1_type -3 186 12 570 244 54 30 chr3 71761603 71761771 -146275387 - MER5B DNA MER1_type -2 176 5 1229 269 86 37 chr3 71761885 71762475 -146274683 + Charlie7 DNA MER1_type 55 673 -1939 4144 191 31 87 chr3 71762476 71762662 -146274496 + Tigger6a DNA MER2_type 2 197 -1400 2246 112 7 0 chr3 71762662 71762965 -146274193 + AluSg SINE Alu 2 306 -4 4144 191 31 87 chr3 71762965 71763923 -146273235 + Tigger6a DNA MER2_type 197 1082 -1 377 204 0 74 chr3 71763941 71764049 -146273109 + Charlie7 DNA MER1_type 2509 2608 -4 267 252 379 0 chr3 71764272 71764375 -146272783 + MER5A DNA MER1_type 41 182 -7 229 322 52 17 chr3 71764546 71764661 -146272497 - MIR SINE MIR -3 259 141 4438 188 34 14 chr3 71764936 71766330 -146270828 + L1MB8 LINE L1 4600 6026 -152 2141 119 7 0 chr3 71766330 71766625 -146270533 - AluSx SINE Alu -15 297 1 4438 188 34 14 chr3 71766625 71766776 -146270382 + L1MB8 LINE L1 6026 6172 -6 380 246 107 42 chr3 71768509 71768675 -146268483 - MER5A DNA MER1_type -14 164 1 250 315 122 12 chr3 71768876 71768999 -146268159 + MIR3 SINE MIR 31 163 -45 193 255 0 0 chr3 71769004 71769055 -146268103 - MIR SINE MIR -1 261 211 916 229 6 0 chr3 71769727 71769906 -146267252 - MER58A DNA MER1_type 0 224 45 1977 252 169 17 chr3 71772748 71773729 -146263429 - L2 LINE L2 0 3313 2177 739 303 118 52 chr3 71774708 71775268 -146261890 - L2 LINE L2 0 3313 2669 2384 91 0 3 chr3 71775268 71775576 -146261582 + AluSg SINE Alu 1 307 -3 739 303 118 52 chr3 71775576 71775820 -146261338 - L2 LINE L2 -644 2669 2443 326 283 50 0 chr3 71775881 71775980 -146261178 - MIR SINE MIR -35 227 124 345 47 0 0 chr3 71776027 71776070 -146261088 + (TG)n Simple_repeat Simple_repeat 2 44 0 269 252 36 54 chr3 71776085 71776196 -146260962 + MER5A DNA MER1_type 78 186 -3 464 332 78 4 chr3 71776509 71776753 -146260405 - L3b LINE CR1 -63 1520 1259 231 114 0 0 chr3 71776818 71776853 -146260305 + (A)n Simple_repeat Simple_repeat 1 35 0 302 259 42 63 chr3 71777048 71777191 -146259967 - MIR SINE MIR -70 192 53 1176 181 19 14 chr3 71777217 71777433 -146259725 + MER20 DNA MER1_type 3 219 0 336 102 0 0 chr3 71777631 71777680 -146259478 + (A)n Simple_repeat Simple_repeat 1 49 0 2423 92 3 0 chr3 71777680 71777983 -146259175 + AluSp SINE Alu 1 304 -9 750 269 65 0 chr3 71778140 71778341 -146258817 + MIR SINE MIR 12 225 -37 348 331 51 31 chr3 71778592 71778846 -146258312 - MIR SINE MIR -2 260 2 258 263 22 36 chr3 71779844 71779981 -146257177 - L1ME4a LINE L1 -24 6097 5963 265 283 54 11 chr3 71780129 71780221 -146256937 - MIR SINE MIR -70 138 43 325 203 0 29 chr3 71780265 71780333 -146256825 - MER58B DNA MER1_type -17 324 259 634 173 135 8 chr3 71780333 71780466 -146256692 + MER7A DNA MER2_type 1 148 -198 625 206 38 82 chr3 71780502 71780686 -146256472 - MIR SINE MIR -65 197 22 788 236 104 9 chr3 71781366 71781578 -146255580 - MIR SINE MIR -12 250 19 627 274 139 32 chr3 71781734 71782165 -146254993 - MLT1J LTR MaLR -34 477 1 317 298 0 0 chr3 71782996 71783080 -146254078 - MIR SINE MIR -133 129 46 283 255 85 10 chr3 71783570 71783731 -146253427 - Charlie8 DNA MER1_type -2153 264 29 395 298 99 18 chr3 71783839 71784010 -146253148 + MIR SINE MIR 3 187 -75 329 247 67 0 chr3 71784293 71784382 -146252776 - MIR3 SINE MIR -27 181 87 180 291 0 0 chr3 71784617 71784696 -146252462 + CT-rich Low_complexity Low_complexity 2 80 0 342 0 0 0 chr3 71784797 71784835 -146252323 + (TG)n Simple_repeat Simple_repeat 2 39 0 1788 181 58 47 chr3 71785379 71785809 -146251349 - MER54B LTR ERVL 0 793 359 299 227 0 0 chr3 71786221 71786287 -146250871 - L1ME4a LINE L1 -96 6025 5960 675 254 59 74 chr3 71786315 71786721 -146250437 - L1ME4a LINE L1 -239 5882 5483 2617 193 108 29 chr3 71787731 71788032 -146249126 + L1MC4a LINE L1 7090 7366 -442 2159 133 0 0 chr3 71788032 71788332 -146248826 + AluSx SINE Alu 1 300 -12 2617 193 108 29 chr3 71788332 71788695 -146248463 + L1MC4a LINE L1 7366 7807 -1 216 0 0 0 chr3 71789618 71789642 -146247516 + (A)n Simple_repeat Simple_repeat 1 24 0 882 264 98 87 chr3 71789830 71790403 -146246755 + MLT1K LTR MaLR 4 582 -6 1537 188 30 20 chr3 71791867 71792170 -146244988 + AluJo SINE Alu 1 306 -6 200 229 21 0 chr3 71792262 71792310 -146244848 + L2 LINE L2 3245 3293 -20 322 138 0 17 chr3 71793090 71793148 -146244010 - MLT2C1 LTR ERVL 0 515 459 43 20 0 0 chr3 71793150 71793200 -146243958 + AT_rich Low_complexity Low_complexity 1 50 0 186 43 0 0 chr3 71793216 71793239 -146243919 + (GA)n Simple_repeat Simple_repeat 2 24 0 1855 152 40 15 chr3 71793242 71793571 -146243587 - MLT2C1 LTR ERVL -60 337 1 428 269 33 33 chr3 71793628 71793751 -146243407 - L1MB7 LINE L1 -42 6138 6020 227 342 89 31 chr3 71793954 71794179 -146242979 + L2 LINE L2 2544 2781 -533 412 292 101 42 chr3 71795134 71795379 -146241779 + MIR SINE MIR 8 249 -13 689 305 162 24 chr3 71796654 71797031 -146240127 - L2 LINE L2 -8 3305 2877 503 310 70 27 chr3 71797844 71798031 -146239127 - MIR SINE MIR -2 260 66 264 259 58 58 chr3 71798212 71798305 -146238853 + MER113 DNA MER1_type? 31 126 -395 1994 136 10 0 chr3 71798305 71798599 -146238559 - AluSg SINE Alu -12 298 2 264 259 58 58 chr3 71798599 71798679 -146238479 + MER113 DNA MER1_type? 125 204 -317 1163 208 32 4 chr3 71798689 71798939 -146238219 + L1MB8 LINE L1 5922 6178 0 3443 176 40 44 chr3 71799080 71799293 -146237865 + L1MB7 LINE L1 5413 5625 -559 1973 150 13 0 chr3 71799293 71799593 -146237565 - AluSx SINE Alu -8 304 1 3443 176 40 44 chr3 71799593 71800145 -146237013 + L1MB7 LINE L1 5625 6175 -9 573 165 220 0 chr3 71800233 71800342 -146236816 + AluJb SINE Alu 2 134 -178 1537 200 83 55 chr3 71800355 71800740 -146236418 + MSTD LTR MaLR 1 396 0 264 199 99 0 chr3 71800942 71801015 -146236143 + MIR SINE MIR 90 144 -64 628 296 103 55 chr3 71801040 71801874 -146235284 - L2 LINE L2 -1 3312 2425 392 336 15 0 chr3 71801938 71802072 -146235086 + (CCA)n Simple_repeat Simple_repeat 1 136 0 7183 145 31 16 chr3 71802084 71804225 -146232933 + L1MA7 LINE L1 4113 6291 0 230 135 54 0 chr3 71804247 71804284 -146232874 + Alu SINE Alu 81 119 -14 234 307 11 0 chr3 71804309 71804397 -146232761 - L1MC4 LINE L1 -1340 6702 6614 * 270 207 58 46 chr3 71804329 71804416 -146232742 + L1MC4 LINE L1 6615 6702 -1340 296 281 0 0 chr3 71804446 71804535 -146232623 + L1MC4 LINE L1 6615 6703 -1339 222 171 0 0 chr3 71804535 71804576 -146232582 + (TATATG)n Simple_repeat Simple_repeat 3 43 0 230 159 0 0 chr3 71804577 71804621 -146232537 - LTR66 LTR ERVL -169 441 398 233 232 51 10 chr3 71804621 71804730 -146232428 + L1MC4 LINE L1 2006 6983 -1339 1605 196 14 0 chr3 71804763 71805038 -146232120 + AluJo SINE Alu 1 279 -33 296 181 12 0 chr3 71805056 71805139 -146232019 + G-rich Low_complexity Low_complexity 4 87 0 351 234 190 7 chr3 71806598 71806735 -146230423 - MIR SINE MIR -15 247 86 319 332 103 31 chr3 71807118 71807341 -146229817 - L2 LINE L2 -166 3106 2868 227 399 94 0 chr3 71807570 71807708 -146229450 + L2 LINE L2 3121 3271 -1 27 0 0 0 chr3 71807734 71807761 -146229397 + AT_rich Low_complexity Low_complexity 1 27 0 721 281 22 18 chr3 71807773 71807997 -146229161 - MIR SINE MIR -21 241 17 332 370 22 27 chr3 71808331 71808515 -146228643 + MLT1K LTR MaLR 17 199 -389 267 275 163 19 chr3 71808657 71808817 -146228341 + MLT1K LTR MaLR 406 588 0 318 242 0 15 chr3 71809095 71809161 -146227997 - L2 LINE L2 0 3272 3208 250 268 0 72 chr3 71809552 71809649 -146227509 + MER5A DNA MER1_type 95 184 -5 1746 227 22 11 chr3 71809649 71810006 -146227152 + MLT1A1 LTR MaLR 1 361 -4 2050 128 3 7 chr3 71810313 71810635 -146226523 - AluSc SINE Alu 0 309 1 1359 215 42 3 chr3 71810743 71811055 -146226103 - MER33 DNA MER1_type 0 324 1 357 284 100 53 chr3 71811523 71811713 -146225445 + MIR SINE MIR 32 230 -32 23 0 0 0 chr3 71811746 71811769 -146225389 + AT_rich Low_complexity Low_complexity 1 23 0 1094 186 40 16 chr3 71811796 71812043 -146225115 + MER96B DNA MER1_type? 1 253 -164 276 317 58 0 chr3 71813823 71813927 -146223231 - MER103 DNA DNA -1 165 56 303 291 69 44 chr3 71814135 71814338 -146222820 + MIR SINE MIR 55 262 0 204 40 0 0 chr3 71814343 71814368 -146222790 + (CTA)n Simple_repeat Simple_repeat 2 26 0 1990 151 0 16 chr3 71814855 71815172 -146221986 + AluSx SINE Alu 1 312 0 2195 104 13 3 chr3 71815995 71816293 -146220865 + AluSc SINE Alu 1 301 -8 203 281 73 31 chr3 71817057 71817153 -146220005 + L2 LINE L2 3169 3268 -45 22 0 0 0 chr3 71817283 71817305 -146219853 + AT_rich Low_complexity Low_complexity 1 22 0 382 344 31 19 chr3 71818186 71818346 -146218812 - MIR SINE MIR -61 201 40 219 173 58 19 chr3 71818364 71818416 -146218742 + GA-rich Low_complexity Low_complexity 2 55 0 425 302 47 13 chr3 71818954 71819103 -146218055 - MIR SINE MIR -27 235 82 222 233 0 0 chr3 71819170 71819213 -146217945 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 207 279 133 73 chr3 71819222 71819387 -146217771 - L2 LINE L2 -69 3203 3029 27 29 0 0 chr3 71819836 71819870 -146217288 + AT_rich Low_complexity Low_complexity 1 34 0 1416 189 65 53 chr3 71820536 71820623 -146216535 - MER2 DNA MER2_type 0 344 260 1997 137 23 0 chr3 71820623 71820922 -146216236 + AluSq SINE Alu 1 306 -7 1416 189 65 53 chr3 71820922 71821173 -146215985 - MER2 DNA MER2_type -84 260 2 712 255 41 71 chr3 71821327 71821594 -146215564 - MIR SINE MIR 0 262 4 25 31 0 0 chr3 71821984 71822016 -146215142 + AT_rich Low_complexity Low_complexity 1 32 0 747 179 0 0 chr3 71822834 71822951 -146214207 + FLAM_A SINE Alu 5 121 -12 1459 173 35 133 chr3 71823290 71823747 -146213411 - MLT2D LTR ERVL -2 412 1 393 123 0 0 chr3 71824084 71824149 -146213009 + (TG)n Simple_repeat Simple_repeat 2 66 0 534 280 75 5 chr3 71824189 71824375 -146212783 + L2 LINE L2 2066 2264 -1050 388 307 0 10 chr3 71825248 71825349 -146211809 - MIR3 SINE MIR -33 175 76 282 305 91 13 chr3 71825342 71825496 -146211662 + MIR SINE MIR 95 260 -2 * 2385 83 0 13 chr3 71825554 71825854 -146211304 + AluSx SINE Alu 1 296 -16 260 301 175 30 chr3 71826667 71826833 -146210325 + L3 LINE CR1 1344 1533 -44 2102 128 6 10 chr3 71826984 71827297 -146209861 + AluSx SINE Alu 1 312 0 613 265 69 70 chr3 71827861 71828271 -146208887 + MLT1H LTR MaLR 1 549 0 383 316 70 6 chr3 71828680 71828838 -146208320 + MIR SINE MIR 34 201 -61 400 287 82 0 chr3 71828934 71829056 -146208102 + MIR SINE MIR 16 147 -115 22 35 0 0 chr3 71829102 71829131 -146208027 + AT_rich Low_complexity Low_complexity 1 29 0 1709 185 4 0 chr3 71829247 71829528 -146207630 - AluJb SINE Alu -30 282 1 222 118 0 0 chr3 71830497 71830531 -146206627 + (A)n Simple_repeat Simple_repeat 1 34 0 431 243 110 23 chr3 71830656 71830829 -146206329 - MIR SINE MIR -29 233 46 49 60 0 0 chr3 71831102 71831186 -146205972 + AT_rich Low_complexity Low_complexity 1 84 0 254 277 48 12 chr3 71831222 71831305 -146205853 + MIR SINE MIR 45 130 -78 599 306 110 32 chr3 71833560 71834099 -146203059 + L2 LINE L2 2693 3270 -2 936 176 123 0 chr3 71834291 71834478 -146202680 + MER20 DNA MER1_type 10 219 0 622 219 73 6 chr3 71835299 71835463 -146201695 + MIR SINE MIR 74 248 -14 299 243 148 74 chr3 71835636 71835825 -146201333 + MLT1J LTR MaLR 49 251 -260 1696 160 35 21 chr3 71836005 71836287 -146200871 + AluJb SINE Alu 1 286 -26 216 86 0 0 chr3 71836287 71836322 -146200836 + (CA)n Simple_repeat Simple_repeat 2 36 0 1001 171 117 44 chr3 71836469 71836803 -146200355 - MSTD LTR MaLR 0 365 1 1862 123 0 0 chr3 71837552 71837803 -146199355 - AluSx SINE Alu -61 251 1 28 88 0 0 chr3 71839590 71839624 -146197534 + AT_rich Low_complexity Low_complexity 1 34 0 1680 86 0 18 chr3 71840022 71840243 -146196915 - AluSx SINE Alu -37 275 59 2221 99 0 17 chr3 71840311 71840613 -146196545 + AluSg SINE Alu 1 297 -13 350 298 169 30 chr3 71841083 71841449 -146195709 + L2 LINE L2 2883 3299 -14 298 313 71 0 chr3 71841456 71841570 -146195588 + MIR SINE MIR 35 157 -63 277 265 61 42 chr3 71841567 71841749 -146195409 - MIR SINE MIR -1 261 15 * 2271 106 0 3 chr3 71841998 71842301 -146194857 - AluSg SINE Alu -8 302 1 343 253 44 0 chr3 71842714 71842805 -146194353 + MIR SINE MIR 85 179 -83 1836 154 7 7 chr3 71842896 71843189 -146193969 - AluSx SINE Alu -9 303 11 243 170 43 0 chr3 71843707 71843754 -146193404 + L2 LINE L2 3224 3272 0 1706 140 52 197 chr3 71844589 71844717 -146192441 + L1MC3 LINE L1 6707 6852 -933 408 55 0 0 chr3 71844717 71844772 -146192386 + (CA)n Simple_repeat Simple_repeat 1 55 0 1706 140 52 197 chr3 71844772 71845146 -146192012 + L1MC3 LINE L1 6852 7117 -668 1903 137 3 47 chr3 71845146 71845468 -146191690 - AluJo SINE Alu -4 308 1 1706 140 52 197 chr3 71845468 71845544 -146191614 + L1MC3 LINE L1 7117 7202 -583 * 5553 119 89 35 chr3 71845528 71846244 -146190914 + L1MA9 LINE L1 5044 5839 -473 1798 154 45 3 chr3 71846244 71846536 -146190622 + AluSx SINE Alu 1 304 -8 5553 119 89 35 chr3 71846536 71847038 -146190120 + L1MA9 LINE L1 5839 6312 0 878 227 0 0 chr3 71847042 71847214 -146189944 + L1MC3 LINE L1 7614 7785 0 1721 152 51 4 chr3 71848089 71848365 -146188793 - AluJb SINE Alu -6 306 18 663 213 35 0 chr3 71848762 71848903 -146188255 - L1MD2 LINE L1 -13 6346 6201 990 189 112 54 chr3 71848910 71849006 -146188152 - L1MD2 LINE L1 -217 6142 6053 2295 90 3 7 chr3 71849006 71849305 -146187853 + AluSc SINE Alu 1 298 -11 990 189 112 54 chr3 71849305 71849467 -146187691 - L1MD2 LINE L1 -306 6053 5869 31 76 0 0 chr3 71849467 71849533 -146187625 + AT_rich Low_complexity Low_complexity 1 66 0 256 235 0 0 chr3 71850528 71850579 -146186579 - L2 LINE L2 -12 3260 3210 180 329 0 0 chr3 71851102 71851172 -146185986 + MIR SINE MIR 180 249 -13 535 248 136 105 chr3 71851226 71851489 -146185669 - MLT1J2 LTR MaLR -10 440 186 2135 100 3 7 chr3 71851489 71851807 -146185351 - AluSx SINE Alu 0 312 12 535 248 136 105 chr3 71851807 71851832 -146185326 - MLT1J2 LTR MaLR -264 186 163 1961 133 0 20 chr3 71851832 71852132 -146185026 - AluJo SINE Alu -18 294 1 535 248 136 105 chr3 71852132 71852269 -146184889 - MLT1J2 LTR MaLR -287 163 1 363 356 107 0 chr3 71852458 71852635 -146184523 + MIR SINE MIR 67 262 0 351 0 0 0 chr3 71852884 71852923 -146184235 + (CA)n Simple_repeat Simple_repeat 1 39 0 357 43 0 0 chr3 71852979 71853026 -146184132 + (CA)n Simple_repeat Simple_repeat 1 47 0 324 319 72 14 chr3 71853577 71853715 -146183443 + MIR SINE MIR 117 262 0 586 306 45 8 chr3 71854607 71854852 -146182306 - MER102a DNA MER1_type -2 328 75 1644 184 10 10 chr3 71855043 71855336 -146181822 - AluJb SINE Alu -15 297 5 577 173 8 8 chr3 71856204 71856337 -146180821 + CT-rich Low_complexity Low_complexity 2 134 0 21 0 0 0 chr3 71856804 71856825 -146180333 + AT_rich Low_complexity Low_complexity 1 21 0 460 304 31 37 chr3 71857004 71857165 -146179993 + MIR SINE MIR 46 205 -57 2120 136 3 3 chr3 71859577 71859878 -146177280 - AluSx SINE Alu -10 302 2 1434 213 6 28 chr3 71860006 71860129 -146177029 + AluJo SINE Alu 1 125 -187 2253 76 0 13 chr3 71860129 71860433 -146176725 - AluY SINE Alu -11 300 1 1434 213 6 28 chr3 71860433 71860628 -146176530 + AluJo SINE Alu 125 312 0 259 356 37 0 chr3 71861369 71861504 -146175654 - MER102b DNA MER1_type -1 340 201 414 264 0 41 chr3 71861513 71861634 -146175524 - L2 LINE L2 0 3313 3198 2704 138 22 75 chr3 71861635 71862123 -146175035 - L1MA8 LINE L1 0 6291 5833 581 171 0 93 chr3 71862123 71862252 -146174906 - FLAM_C SINE Alu -15 118 2 2704 138 22 75 chr3 71862252 71862307 -146174851 - L1MA8 LINE L1 -458 5833 5777 1974 160 39 9 chr3 71862307 71862643 -146174515 + L1MB5 LINE L1 5792 6125 -59 1781 159 7 26 chr3 71862643 71862951 -146174207 + AluJb SINE Alu 1 302 -10 1974 160 39 9 chr3 71862951 71862996 -146174162 + L1MB5 LINE L1 6125 6167 -17 238 247 25 25 chr3 71863184 71863265 -146173893 - L2 LINE L2 -1252 2062 1982 258 32 0 0 chr3 71863572 71863603 -146173555 + (CAT)n Simple_repeat Simple_repeat 2 32 0 2373 67 27 3 chr3 71863629 71863926 -146173232 + AluY SINE Alu 1 304 -7 652 276 82 0 chr3 71864106 71864302 -146172856 - MIR SINE MIR -3 259 48 381 182 91 45 chr3 71864304 71864436 -146172722 - MER102b DNA MER1_type -134 207 70 3780 184 46 39 chr3 71864436 71864800 -146172358 - L1MB7 LINE L1 -13 6171 5811 1988 118 3 33 chr3 71864800 71865105 -146172053 - AluSg SINE Alu -13 297 2 3780 184 46 39 chr3 71865105 71865703 -146171455 - L1MB7 LINE L1 -373 5811 5118 2248 107 0 0 chr3 71865703 71865715 -146171443 - AluSc SINE Alu -11 298 287 207 0 0 0 chr3 71865715 71865738 -146171420 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 2248 107 0 0 chr3 71865738 71866023 -146171135 - AluSc SINE Alu -21 288 1 3780 184 46 39 chr3 71866023 71866037 -146171121 - L1MB7 LINE L1 -1066 5118 5106 660 267 17 52 chr3 71867560 71867792 -146169366 - MIR SINE MIR -21 241 18 1489 175 62 21 chr3 71867971 71868262 -146168896 - AluJb SINE Alu -9 303 1 23 0 0 0 chr3 71868407 71868430 -146168728 + AT_rich Low_complexity Low_complexity 1 23 0 266 234 62 16 chr3 71869566 71869630 -146167528 + L2 LINE L2 3206 3272 0 800 149 0 0 chr3 71869798 71869912 -146167246 + FLAM_C SINE Alu 1 114 -29 282 95 0 0 chr3 71871341 71871383 -146165775 + (TG)n Simple_repeat Simple_repeat 1 42 0 355 274 102 95 chr3 71872608 71873009 -146164149 - L1M2 LINE L1 -5884 965 562 30 0 0 0 chr3 71873148 71873178 -146163980 + GC_rich Low_complexity Low_complexity 1 30 0 359 240 167 42 chr3 71873181 71873373 -146163785 + L1M2 LINE L1 751 966 -5883 195 162 0 0 chr3 71873480 71873517 -146163641 + C-rich Low_complexity Low_complexity 3 39 0 1966 86 10 70 chr3 71875433 71875747 -146161411 - AluSc SINE Alu -14 295 1 1951 131 7 16 chr3 71876193 71876498 -146160660 - AluSx SINE Alu -7 305 4 272 276 90 45 chr3 71876603 71876737 -146160421 + MIR SINE MIR 79 218 -44 2072 102 0 21 chr3 71877420 71877732 -146159426 - AluSx SINE Alu 0 308 3 243 0 0 0 chr3 71878691 71878718 -146158440 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 488 230 47 20 chr3 71878957 71879105 -146158053 - L1MC5 LINE L1 -48 7913 7762 1149 180 66 23 chr3 71879614 71879870 -146157288 + MER58B DNA MER1_type 75 341 0 1646 33 0 0 chr3 71880114 71880298 -146156860 - L1PA4 LINE L1 0 6155 5972 526 268 61 24 chr3 71880831 71880995 -146156163 - MIR SINE MIR -87 175 6 370 310 105 20 chr3 71882207 71882407 -146154751 + MIR SINE MIR 32 248 -14 1935 155 0 25 chr3 71882536 71882852 -146154306 - AluJb SINE Alu 0 312 5 455 271 209 16 chr3 71883794 71884038 -146153120 - L2 LINE L2 -36 3277 2987 1942 128 45 3 chr3 71884039 71884329 -146152829 + AluJb SINE Alu 1 302 -10 2023 302 85 32 chr3 71884549 71885651 -146151507 - L2 LINE L2 -704 2610 1450 1949 168 53 9 chr3 71885816 71886138 -146151020 + MER1B DNA MER1_type 2 337 0 747 271 131 34 chr3 71886671 71887129 -146150029 - L2 LINE L2 -1 3312 2785 200 329 7 84 chr3 71887138 71887293 -146149865 + L2 LINE L2 2889 3031 -241 3292 81 7 3 chr3 71887296 71887770 -146149388 - L1PA8 LINE L1 -138 6031 5564 1033 184 0 0 chr3 71888669 71888832 -146148326 + FRAM SINE Alu 1 163 -3 675 252 91 9 chr3 71889018 71889228 -146147930 - MIR SINE MIR 0 262 36 2372 80 0 0 chr3 71889784 71890085 -146147073 - AluSc SINE Alu -8 301 1 2352 61 10 10 chr3 71891047 71891343 -146145815 - AluY SINE Alu -14 297 2 806 130 17 0 chr3 71891614 71891753 -146145405 - FLAM_C SINE Alu 0 141 1 22 0 0 0 chr3 71892702 71892724 -146144434 + AT_rich Low_complexity Low_complexity 1 22 0 215 287 83 37 chr3 71892995 71893103 -146144055 + L2 LINE L2 2682 2794 -520 311 349 26 5 chr3 71893341 71893533 -146143625 - L1MC4a LINE L1 -1914 5894 5699 554 213 79 74 chr3 71895174 71895322 -146141836 + MIR SINE MIR 40 191 -71 908 162 102 102 chr3 71895322 71895538 -146141620 - MER20 DNA MER1_type -1 218 3 554 213 79 74 chr3 71895538 71895591 -146141567 + MIR SINE MIR 191 242 -20 252 0 0 0 chr3 71895629 71895657 -146141501 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 217 359 66 9 chr3 71896023 71896129 -146141029 + L2 LINE L2 3125 3236 -36 455 317 91 23 chr3 71896138 71896403 -146140755 + Tigger8 DNA MER2_type 29 311 -355 315 255 174 0 chr3 71896575 71896673 -146140485 + L2 LINE L2 3192 3306 -7 300 234 0 0 chr3 71897077 71897141 -146140017 + Tigger8 DNA MER2_type 476 539 -127 870 266 29 16 chr3 71898240 71898484 -146138674 + MIR SINE MIR 6 252 -10 28 0 0 0 chr3 71899497 71899525 -146137633 + AT_rich Low_complexity Low_complexity 1 28 0 293 330 147 26 chr3 71899617 71899923 -146137235 + L2 LINE L2 2311 2653 -661 3408 217 44 30 chr3 71900033 71900798 -146136360 + L1M4 LINE L1 16 794 -5748 378 0 0 0 chr3 71900798 71900840 -146136318 + (CA)n Simple_repeat Simple_repeat 1 42 0 3408 217 44 30 chr3 71900840 71900866 -146136292 + L1M4 LINE L1 794 818 -5724 204 167 24 0 chr3 71901048 71901090 -146136068 + (TAA)n Simple_repeat Simple_repeat 3 45 0 388 268 101 67 chr3 71901126 71901335 -146135823 - MIR SINE MIR -24 238 23 1951 172 11 46 chr3 71901749 71902098 -146135060 + MER1B DNA MER1_type 1 337 0 452 241 236 20 chr3 71902747 71902942 -146134216 + MIR SINE MIR 15 251 -11 304 270 40 30 chr3 71902999 71903099 -146134059 + L2 LINE L2 3213 3313 0 680 277 94 5 chr3 71903263 71903465 -146133693 - MIR SINE MIR -21 241 22 434 309 206 28 chr3 71903472 71904048 -146133110 - L2 LINE L2 -20 3252 2560 * 471 232 199 14 chr3 71904028 71904206 -146132952 - MIR SINE MIR -21 241 26 3121 156 60 6 chr3 71904664 71905185 -146131973 - MER44D DNA MER2_type -1 604 1 2118 144 0 13 chr3 71905266 71905604 -146131554 - AluSx SINE Alu 0 312 1 733 272 82 9 chr3 71905622 71905854 -146131304 - MIR SINE MIR -6 256 8 495 273 34 34 chr3 71906304 71906480 -146130678 - L2 LINE L2 -271 3042 2867 2425 66 0 13 chr3 71906870 71907172 -146129986 + AluY SINE Alu 1 298 -13 231 292 204 7 chr3 71907553 71907690 -146129468 + MIR SINE MIR 29 192 -70 * 459 298 61 61 chr3 71907677 71907816 -146129342 - MIR SINE MIR -10 252 111 1927 125 17 24 chr3 71907816 71908111 -146129047 + AluJb SINE Alu 1 293 -19 459 298 61 61 chr3 71908111 71908216 -146128942 - MIR SINE MIR -150 112 8 1362 270 103 38 chr3 71908246 71909019 -146128139 - L2 LINE L2 -252 3061 2216 29 60 0 0 chr3 71909499 71909549 -146127609 + AT_rich Low_complexity Low_complexity 1 50 0 2238 107 3 0 chr3 71909912 71910210 -146126948 - AluSx SINE Alu -13 299 1 463 232 177 33 chr3 71910359 71910540 -146126618 + MIR SINE MIR 56 262 0 489 206 48 16 chr3 71911504 71911630 -146125528 + MIR SINE MIR 77 206 -56 24 32 0 0 chr3 71912396 71912427 -146124731 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr3 71913157 71913179 -146123979 + AT_rich Low_complexity Low_complexity 1 22 0 279 0 0 0 chr3 71913348 71913379 -146123779 + (T)n Simple_repeat Simple_repeat 1 31 0 537 284 18 24 chr3 71913742 71913911 -146123247 - L2 LINE L2 -247 3066 2899 2164 99 27 0 chr3 71914167 71914460 -146122698 - AluSx SINE Alu -11 301 1 201 274 19 85 chr3 71914574 71914680 -146122478 - L2 LINE L2 -2 3270 3172 229 229 48 60 chr3 71914765 71914848 -146122310 - MER91C DNA MER1_type 0 140 59 2362 104 0 0 chr3 71915213 71915522 -146121636 - AluSx SINE Alu -3 309 1 1391 81 50 0 chr3 71916762 71916960 -146120198 + AluY SINE Alu 100 307 -4 409 348 0 19 chr3 71917013 71917168 -146119990 + MER5A DNA MER1_type 17 168 -21 789 190 77 20 chr3 71917959 71918284 -146118874 + MER113 DNA MER1_type? 81 443 -78 911 280 135 50 chr3 71920374 71921192 -146115966 - L2 LINE L2 0 3313 2424 23 0 0 0 chr3 71921525 71921548 -146115610 + AT_rich Low_complexity Low_complexity 1 23 0 350 335 40 0 chr3 71921733 71921909 -146115249 - L1MC4a LINE L1 -1922 5886 5704 392 191 21 21 chr3 71922112 71922206 -146114952 + L1MA9 LINE L1 6219 6312 0 28 48 0 0 chr3 71922233 71922275 -146114883 + AT_rich Low_complexity Low_complexity 1 42 0 2088 143 0 0 chr3 71922924 71923218 -146113940 - AluSx SINE Alu -18 294 1 2066 154 0 0 chr3 71923418 71923729 -146113429 - AluJb SINE Alu -1 311 1 625 324 44 24 chr3 71924104 71924508 -146112650 - L1MC4a LINE L1 -592 5586 5519 342 45 0 0 chr3 71924579 71924623 -146112535 + (CA)n Simple_repeat Simple_repeat 2 45 0 23 33 0 0 chr3 71924718 71924748 -146112410 + AT_rich Low_complexity Low_complexity 1 30 0 286 255 85 28 chr3 71925712 71925818 -146111340 - MIR SINE MIR -1 261 150 752 196 135 0 chr3 71927465 71927613 -146109545 - FRAM SINE Alu -5 171 4 22 35 0 0 chr3 71932175 71932204 -146104954 + AT_rich Low_complexity Low_complexity 1 29 0 253 224 0 65 chr3 71932286 71932393 -146104765 - MER113 DNA MER1_type? -420 101 2 252 0 0 0 chr3 71932436 71932464 -146104694 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 402 273 128 32 chr3 71933519 71933706 -146103452 - MIR SINE MIR -38 224 20 2543 206 50 23 chr3 71934030 71934636 -146102522 - LTR27 LTR ERV1 0 636 15 756 263 5 19 chr3 71935009 71935214 -146101944 + MIR SINE MIR 33 234 -28 946 171 17 17 chr3 71938611 71938787 -146098371 + MER5B DNA MER1_type 3 178 0 23 0 0 0 chr3 71939509 71939532 -146097626 + AT_rich Low_complexity Low_complexity 1 23 0 529 270 31 18 chr3 71940884 71941047 -146096111 - MIR SINE MIR -7 255 91 366 277 213 6 chr3 71941057 71941235 -146095923 + MIR SINE MIR 38 250 -12 324 0 0 0 chr3 71943137 71943173 -146093985 + (TG)n Simple_repeat Simple_repeat 2 37 0 698 143 8 34 chr3 71944023 71944142 -146093016 + FLAM_A SINE Alu 16 131 -11 25 0 0 0 chr3 71944146 71944171 -146092987 + AT_rich Low_complexity Low_complexity 1 25 0 2737 167 12 12 chr3 71945183 71945370 -146091788 - L1MB1 LINE L1 -51 6117 5931 728 298 26 30 chr3 71945370 71945709 -146091449 - L1PA8A LINE L1 -206 5925 5588 306 355 57 55 chr3 71946299 71946850 -146090308 - L2 LINE L2 0 3272 2737 237 239 155 0 chr3 71947102 71947173 -146089985 - L2 LINE L2 -39 3274 3193 1902 127 62 53 chr3 71949969 71950309 -146086849 - MER2 DNA MER2_type 0 344 2 219 239 310 0 chr3 71951833 71951904 -146085254 - MIR SINE MIR -122 140 48 346 291 36 30 chr3 71951954 71952119 -146085039 - L2 LINE L2 -259 3054 2889 371 219 39 112 chr3 71952296 71952474 -146084684 + MER103 DNA DNA 1 165 -1 207 69 0 0 chr3 71953787 71953816 -146083342 + (T)n Simple_repeat Simple_repeat 1 29 0 1016 32 0 16 chr3 71953857 71953982 -146083176 + AluY SINE Alu 178 300 -11 261 268 195 24 chr3 71954373 71954496 -146082662 - MER5A DNA MER1_type -14 175 32 562 205 128 39 chr3 71954541 71954697 -146082461 - MER5B DNA MER1_type -7 171 2 2272 123 0 0 chr3 71954737 71955046 -146082112 - AluSx SINE Alu -3 309 1 262 328 0 0 chr3 71955555 71955622 -146081536 - L2 LINE L2 -17 3255 3189 240 111 0 0 chr3 71956481 71956517 -146080641 + (TCC)n Simple_repeat Simple_repeat 2 37 0 216 0 0 0 chr3 71957129 71957153 -146080005 + (A)n Simple_repeat Simple_repeat 1 24 0 1987 115 25 3 chr3 71957486 71957772 -146079386 + AluSx SINE Alu 1 292 -20 263 174 0 0 chr3 71958851 71958897 -146078261 + L1MC4 LINE L1 6657 6702 -1340 23 0 0 0 chr3 71962730 71962753 -146074405 + AT_rich Low_complexity Low_complexity 1 23 0 192 184 0 0 chr3 71962987 71963036 -146074122 + (TG)n Simple_repeat Simple_repeat 2 50 0 24 0 0 0 chr3 71963386 71963410 -146073748 + AT_rich Low_complexity Low_complexity 1 24 0 216 0 0 0 chr3 71963715 71963739 -146073419 + (T)n Simple_repeat Simple_repeat 1 24 0 21 36 0 0 chr3 71963939 71963967 -146073191 + AT_rich Low_complexity Low_complexity 1 28 0 369 312 155 44 chr3 71965703 71966116 -146071042 - L2 LINE L2 -681 2633 2175 412 260 177 10 chr3 71966174 71966366 -146070792 - MIR SINE MIR -21 241 18 293 347 149 19 chr3 71967190 71967565 -146069593 - L2 LINE L2 -2517 797 374 207 0 0 0 chr3 71967859 71967882 -146069276 + (A)n Simple_repeat Simple_repeat 1 23 0 988 110 264 0 chr3 71968947 71969129 -146068029 - MER30 DNA MER1_type 0 230 1 267 231 77 44 chr3 71969194 71969285 -146067873 - MER102a DNA MER1_type 0 330 237 253 185 37 37 chr3 71969825 71969906 -146067252 - L1M4 LINE L1 -2171 3975 3895 227 235 216 7 chr3 71970309 71970420 -146066738 + L2 LINE L2 2968 3054 -259 210 71 0 0 chr3 71970420 71970448 -146066710 + (TCTA)n Simple_repeat Simple_repeat 2 29 0 227 235 216 7 chr3 71970448 71970489 -146066669 + L2 LINE L2 3054 3152 -161 199 222 136 25 chr3 71972288 71972369 -146064789 - MIR SINE MIR -113 149 60 491 273 148 30 chr3 71972877 71973321 -146063837 + L2 LINE L2 2553 3046 -267 195 299 30 0 chr3 71973699 71973766 -146063392 + MIR3 SINE MIR 87 155 -53 292 303 222 26 chr3 71974769 71975003 -146062155 - L2 LINE L2 -20 3293 3014 296 302 252 17 chr3 71975107 71975587 -146061571 - L2 LINE L2 -820 2494 1902 396 240 166 44 chr3 71975587 71976016 -146061142 + L1ME LINE L1 5364 5840 -302 2225 89 4 0 chr3 71976416 71976723 -146060435 + AluY SINE Alu 1 308 0 3904 158 88 8 chr3 71977070 71977827 -146059331 + L1MB7 LINE L1 5365 6182 -2 592 192 152 13 chr3 71978779 71978930 -146058228 - MER58C DNA MER1_type 0 215 44 517 236 69 7 chr3 71980013 71980157 -146057001 + L1MC5 LINE L1 7755 7907 -54 978 243 94 50 chr3 71980515 71980951 -146056207 + L1MC4 LINE L1 6752 7206 -836 330 148 16 0 chr3 71981086 71981147 -146056011 + L1ME4a LINE L1 6060 6121 0 382 285 274 0 chr3 71981176 71981362 -146055796 - MIR SINE MIR -6 256 20 488 287 36 49 chr3 71981511 71981913 -146055245 + L1MC4a LINE L1 5525 5920 -246 2207 113 0 7 chr3 71982035 71982336 -146054822 + AluSq SINE Alu 1 299 -14 327 291 61 47 chr3 71984365 71984513 -146052645 - MIR SINE MIR -93 169 20 2221 110 0 0 chr3 71984684 71984976 -146052182 - AluSx SINE Alu -20 292 1 385 252 50 54 chr3 71984979 71985237 -146051921 - L1ME LINE L1 -321 5800 5544 455 242 67 0 chr3 71985446 71985566 -146051592 - L2 LINE L2 0 3313 3186 2234 98 3 29 chr3 71985706 71986022 -146051136 - AluSx SINE Alu -4 308 1 279 276 39 82 chr3 71986022 71986301 -146050857 - L1ME LINE L1 -325 5796 5530 1565 241 35 52 chr3 71986312 71986396 -146050762 - MER39 LTR ERV1 0 707 623 1928 125 75 0 chr3 71986396 71986677 -146050481 + AluSg SINE Alu 1 302 -8 1565 241 35 52 chr3 71986677 71987125 -146050033 - MER39 LTR ERV1 -84 623 1 277 281 41 0 chr3 71987176 71987297 -146049861 - L1P4 LINE L1 -740 5434 5309 1214 224 3 45 chr3 71990134 71990424 -146046734 + L1MC4a LINE L1 5585 5862 -1946 32 44 0 29 chr3 71990841 71990868 -146046290 + AT_rich Low_complexity Low_complexity 1 27 -39 1733 146 14 7 chr3 71990868 71991155 -146046003 - AluJo SINE Alu -23 289 1 32 44 0 29 chr3 71991155 71991195 -146045963 + AT_rich Low_complexity Low_complexity 27 66 0 902 218 95 25 chr3 71992088 71992331 -146044827 - MIR SINE MIR 0 262 3 705 186 96 48 chr3 71993066 71993254 -146043904 + L1MB4 LINE L1 5938 6134 -46 1010 182 17 0 chr3 71993254 71993435 -146043723 + AluJb SINE Alu 121 304 -8 21 36 0 0 chr3 71993459 71993487 -146043671 + AT_rich Low_complexity Low_complexity 1 28 0 2003 125 31 0 chr3 71994055 71994344 -146042814 - AluSx SINE Alu -12 300 3 208 91 30 0 chr3 71994789 71994822 -146042336 - MER91B DNA MER1_type -124 66 33 378 250 114 28 chr3 71994869 71995155 -146042003 + HAL1b LINE L1 364 1651 -673 324 289 70 89 chr3 71995387 71996266 -146040892 + L1M4 LINE L1 2597 3459 -2687 261 274 121 6 chr3 71996338 71996495 -146040663 + L1MC4 LINE L1 7705 7879 -163 693 232 46 10 chr3 71996544 71996738 -146040420 + L1M4 LINE L1 4740 4940 -1206 287 276 16 47 chr3 71996853 71996980 -146040178 - LTR67 LTR ERVL 0 557 435 1586 187 24 0 chr3 71997838 71998127 -146039031 - MLT1B LTR MaLR 0 390 95 1949 120 57 0 chr3 71998144 71998427 -146038731 - AluSx SINE Alu -13 299 1 578 299 34 19 chr3 71998432 71998639 -146038519 + MIR SINE MIR 53 262 0 237 349 118 26 chr3 71999801 72000030 -146037128 + L2 LINE L2 2398 2647 -667 180 0 0 0 chr3 72001464 72001484 -146035674 + (CAAAG)n Simple_repeat Simple_repeat 1 20 0 2242 135 0 0 chr3 72001915 72002219 -146034939 - AluSx SINE Alu -8 304 1 29 0 0 0 chr3 72002869 72002898 -146034260 + AT_rich Low_complexity Low_complexity 1 29 0 2484 83 0 6 chr3 72002898 72003211 -146033947 - AluY SINE Alu 0 311 1 1076 65 58 0 chr3 72003574 72003712 -146033446 - L1PB2 LINE L1 -7 6144 5999 29 0 0 0 chr3 72003860 72003889 -146033269 + AT_rich Low_complexity Low_complexity 1 29 0 4874 106 32 0 chr3 72003889 72004627 -146032531 - L1PB2 LINE L1 -165 5986 5226 21 0 0 0 chr3 72004678 72004699 -146032459 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr3 72005649 72005669 -146031489 + (TG)n Simple_repeat Simple_repeat 1 20 0 641 188 91 19 chr3 72005978 72006132 -146031026 + MSTA LTR MaLR 31 195 -233 2828 26 0 0 chr3 72006132 72006443 -146030715 + AluY SINE Alu 1 311 0 305 279 8 66 chr3 72006668 72006790 -146030368 - MER5A DNA MER1_type -68 121 7 596 203 52 14 chr3 72006844 72007037 -146030121 - LTR27 LTR ERV1 0 501 328 1190 133 0 0 chr3 72007192 72007372 -146029786 - LTR27 LTR ERV1 -303 333 154 1725 128 44 11 chr3 72007372 72007645 -146029513 + AluSx SINE Alu 1 282 -30 502 224 30 12 chr3 72007746 72007911 -146029247 - L1M4 LINE L1 -871 5275 5108 2723 197 115 30 chr3 72007933 72009024 -146028134 - L1M4 LINE L1 -4831 2024 942 1338 192 32 111 chr3 72009022 72009391 -146027767 - L1M4 LINE L1 -6509 350 11 * 433 209 0 0 chr3 72009451 72009542 -146027616 + L2 LINE L2 3223 3313 0 315 255 9 28 chr3 72009914 72010020 -146027138 + MIR SINE MIR 46 149 -113 2404 188 105 87 chr3 72010169 72010981 -146026177 - LTR1B LTR ERV1 0 826 1 2254 106 3 10 chr3 72011414 72011725 -146025433 + AluSc SINE Alu 1 309 0 213 279 44 0 chr3 72011882 72011950 -146025208 + MIR SINE MIR 53 123 -85 180 293 0 0 chr3 72012006 72012047 -146025111 + L2 LINE L2 3224 3264 -8 249 261 54 22 chr3 72012868 72012960 -146024198 - MIR SINE MIR -70 192 98 1644 143 40 50 chr3 72013041 72013341 -146023817 + AluJb SINE Alu 1 297 -15 783 245 11 5 chr3 72013874 72014062 -146023096 + MER5A DNA MER1_type 1 189 0 854 227 47 0 chr3 72014215 72014387 -146022771 - MER58A DNA MER1_type 0 224 45 294 284 63 16 chr3 72014426 72014553 -146022605 + Charlie8 DNA MER1_type 142 274 -2143 240 256 39 26 chr3 72014637 72014715 -146022443 + (CATG)n Simple_repeat Simple_repeat 1 79 0 267 336 34 13 chr3 72016154 72016303 -146020855 - MIR SINE MIR -109 153 2 879 230 33 5 chr3 72016447 72016660 -146020498 - MER20 DNA MER1_type 0 219 1 729 194 167 31 chr3 72016712 72016939 -146020219 + MIR SINE MIR 5 262 0 208 274 0 0 chr3 72016970 72017021 -146020137 - MIR3 SINE MIR -54 154 104 288 0 0 0 chr3 72017811 72017843 -146019315 + (TG)n Simple_repeat Simple_repeat 2 33 0 219 229 0 0 chr3 72017845 72017893 -146019265 + GA-rich Low_complexity Low_complexity 1 48 0 2148 133 10 0 chr3 72019172 72019474 -146017684 + AluSx SINE Alu 3 307 -5 771 189 15 80 chr3 72019732 72019933 -146017225 - MER5A DNA MER1_type 0 189 2 362 301 15 30 chr3 72020221 72020354 -146016804 - MIR3 SINE MIR -40 168 38 203 77 0 26 chr3 72021843 72021882 -146015276 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2161 132 119 10 chr3 72022263 72022649 -146014509 - MSTA LTR MaLR 0 428 1 196 261 125 23 chr3 72022984 72023072 -146014086 + L2 LINE L2 3184 3280 -33 1067 168 32 16 chr3 72023419 72023604 -146013554 - MER20 DNA MER1_type -2 217 30 254 273 73 45 chr3 72023668 72023778 -146013380 + MLT1K LTR MaLR 133 245 -343 357 211 291 13 chr3 72024058 72024295 -146012863 + L2 LINE L2 2944 3246 -67 183 42 0 0 chr3 72024330 72024354 -146012804 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 329 264 11 0 chr3 72025069 72025160 -146011998 - L2 LINE L2 -8 3305 3214 213 118 0 0 chr3 72025361 72025395 -146011763 + MIR SINE MIR 158 191 -71 213 260 0 0 chr3 72025919 72025969 -146011189 + MIR SINE MIR 92 141 -67 986 217 43 5 chr3 72025985 72026192 -146010966 - MER58A DNA MER1_type 0 224 10 210 204 74 0 chr3 72026198 72026252 -146010906 + MIR3 SINE MIR 150 207 -1 638 343 20 8 chr3 72026334 72026588 -146010570 - MIR SINE MIR 0 262 6 207 275 43 0 chr3 72027832 72027901 -146009257 + L2 LINE L2 2977 3048 -224 383 275 84 8 chr3 72028013 72028179 -146008979 + MIR SINE MIR 18 196 -66 1122 278 65 34 chr3 72028865 72029361 -146007797 + MLT1J LTR MaLR 1 511 0 1724 190 71 8 chr3 72029387 72029740 -146007418 + MER58D DNA MER1_type 12 386 0 2131 156 19 19 chr3 72030981 72031346 -146005812 + MLT1A1 LTR MaLR 1 365 0 1744 237 70 21 chr3 72031450 72031752 -146005406 + L1ME3A LINE L1 5655 5992 -178 2148 98 0 14 chr3 72031752 72032114 -146005044 + AluY SINE Alu 1 358 0 1744 237 70 21 chr3 72032114 72032295 -146004863 + L1ME3A LINE L1 5992 6163 -7 256 274 57 0 chr3 72032503 72032609 -146004549 - MIR SINE MIR -44 218 107 1175 225 173 43 chr3 72032728 72033173 -146003985 + MLT1D LTR MaLR 2 504 -1 365 261 42 17 chr3 72033268 72033387 -146003771 + MER103 DNA DNA 38 159 -7 258 218 0 0 chr3 72033572 72033627 -146003531 + MIR3 SINE MIR 147 201 -7 371 206 33 11 chr3 72033647 72033739 -146003419 - MER117 DNA MER1_type -47 150 57 23 33 0 0 chr3 72034472 72034502 -146002656 + AT_rich Low_complexity Low_complexity 1 30 0 484 291 62 32 chr3 72034680 72035210 -146001948 - L2 LINE L2 -157 3156 2555 759 202 29 12 chr3 72035230 72035403 -146001755 - L1ME2 LINE L1 0 6164 5989 396 296 11 51 chr3 72035423 72035599 -146001559 - L2 LINE L2 -769 2545 2377 25 31 0 0 chr3 72036060 72036092 -146001066 + AT_rich Low_complexity Low_complexity 1 32 0 574 224 59 26 chr3 72036163 72036315 -146000843 - MIR SINE MIR 0 262 106 1169 108 20 5 chr3 72036709 72036904 -146000254 - L1MA4 LINE L1 -6 6294 6097 404 176 11 70 chr3 72036914 72037101 -146000057 + (TTATA)n Simple_repeat Simple_repeat 4 179 0 818 229 146 60 chr3 72037591 72037927 -145999231 - MLT1J2 LTR MaLR 0 450 86 324 0 0 0 chr3 72037927 72037963 -145999195 + (A)n Simple_repeat Simple_repeat 1 36 0 194 225 0 0 chr3 72039106 72039146 -145998012 - MIR SINE MIR -115 147 108 329 294 0 28 chr3 72039213 72039322 -145997836 - MIR3 SINE MIR -22 186 81 1807 142 26 43 chr3 72039405 72039707 -145997451 - AluJo SINE Alu -15 297 1 511 259 29 0 chr3 72039854 72039993 -145997165 + MIR SINE MIR 84 226 -36 342 0 0 0 chr3 72040578 72040616 -145996542 + (T)n Simple_repeat Simple_repeat 1 38 0 357 236 14 0 chr3 72040628 72040700 -145996458 + MLT1J2 LTR MaLR 99 171 -279 710 263 31 16 chr3 72041243 72041437 -145995721 + MLT1J LTR MaLR 310 506 -5 268 214 10 10 chr3 72042477 72042575 -145994583 + (TA)n Simple_repeat Simple_repeat 2 99 0 597 307 33 52 chr3 72042581 72042679 -145994479 - L1MC4a LINE L1 -1876 5932 5834 1991 146 7 0 chr3 72042679 72042974 -145994184 - AluSx SINE Alu -15 297 1 597 307 33 52 chr3 72042974 72043240 -145993918 - L1MC4a LINE L1 -1974 5834 5575 1303 241 22 22 chr3 72043911 72044226 -145992932 + Charlie4a DNA MER1_type 1 315 -193 5886 117 12 3 chr3 72044438 72045746 -145991412 - L1PA16 LINE L1 -9 6157 4828 473 289 52 21 chr3 72045987 72046181 -145990977 - L1ME LINE L1 -479 5683 5484 296 254 18 45 chr3 72046211 72046321 -145990837 + L2 LINE L2 2948 3054 -218 474 230 0 30 chr3 72046328 72046463 -145990695 + L2 LINE L2 3183 3313 0 585 243 58 23 chr3 72047267 72047440 -145989718 + MIR SINE MIR 66 244 -18 2052 80 0 0 chr3 72047811 72048075 -145989083 + L1PA5 LINE L1 5888 6151 -3 867 148 0 0 chr3 72048075 72048203 -145988955 - AluSg SINE Alu -182 128 1 660 189 171 23 chr3 72048474 72048493 -145988665 - MIR SINE MIR -48 214 199 1102 194 21 30 chr3 72048493 72048730 -145988428 - MER46A DNA MER2_type -1 235 1 660 189 171 23 chr3 72048730 72048885 -145988273 - MIR SINE MIR -63 199 14 1191 133 0 0 chr3 72049820 72049986 -145987172 - AluSg/x SINE Alu -12 300 135 22 56 0 0 chr3 72050165 72050201 -145986957 + AT_rich Low_complexity Low_complexity 1 36 0 230 248 128 45 chr3 72051228 72051361 -145985797 - MIR SINE MIR -72 190 47 * 342 291 109 33 chr3 72051331 72051541 -145985617 + MIR SINE MIR 36 261 -1 352 210 121 40 chr3 72051813 72051937 -145985221 + L1ME3A LINE L1 6036 6169 -1 790 288 4 28 chr3 72052534 72052784 -145984374 - MIR SINE MIR -2 260 17 1630 131 82 19 chr3 72053380 72053648 -145983510 + AluJb SINE Alu 21 305 -7 21 57 0 0 chr3 72053944 72053979 -145983179 + AT_rich Low_complexity Low_complexity 1 35 0 1372 204 54 40 chr3 72053982 72054237 -145982921 + L1 LINE L1 4120 4370 -1776 1523 97 0 80 chr3 72054237 72054474 -145982684 + AluSq SINE Alu 85 302 -11 1372 204 54 40 chr3 72054474 72054494 -145982664 + L1 LINE L1 4370 4388 -1758 405 95 0 0 chr3 72054494 72054557 -145982601 + (CA)n Simple_repeat Simple_repeat 2 64 0 1372 204 54 40 chr3 72054557 72054707 -145982451 + L1 LINE L1 4388 4552 -1594 311 299 8 22 chr3 72054915 72055049 -145982109 + MIR SINE MIR 35 166 -96 1463 285 164 13 chr3 72055269 72055977 -145981181 - MER45C DNA AcHobo -85 868 54 328 252 219 0 chr3 72056013 72056136 -145981022 + MIR3 SINE MIR 49 198 -10 360 231 67 0 chr3 72056141 72056245 -145980913 + MIR3 SINE MIR 71 181 -27 1523 246 36 6 chr3 72056759 72057116 -145980042 + MER87 LTR ERV1 174 541 0 201 74 0 0 chr3 72057116 72057143 -145980015 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 500 311 117 19 chr3 72057144 72057281 -145979877 + L2 LINE L2 2605 2727 -586 1642 279 49 14 chr3 72057281 72057772 -145979386 - MLT1J LTR MaLR -2 509 2 500 311 117 19 chr3 72057772 72058110 -145979048 + L2 LINE L2 2727 3131 -182 232 270 68 0 chr3 72058199 72058273 -145978885 + L2 LINE L2 3179 3257 -56 246 281 79 29 chr3 72058722 72058861 -145978297 + L2 LINE L2 2253 2398 -916 1041 131 25 0 chr3 72058934 72059094 -145978064 - MER20 DNA MER1_type 0 219 56 509 245 51 56 chr3 72059106 72059322 -145977836 + MIR SINE MIR 15 229 -33 229 295 214 44 chr3 72059353 72059784 -145977374 + L2 LINE L2 2467 2970 -344 504 290 9 134 chr3 72059884 72060108 -145977050 + MER91A DNA MER1_type 1 196 0 708 218 0 0 chr3 72060262 72060386 -145976772 + FLAM_A SINE Alu 1 124 -9 389 325 45 6 chr3 72060701 72060858 -145976300 - MIR3 SINE MIR -21 187 25 457 305 55 12 chr3 72061405 72061569 -145975589 + MIR SINE MIR 21 191 -71 267 385 33 8 chr3 72061665 72061787 -145975371 + L2 LINE L2 3143 3267 -5 1298 203 104 50 chr3 72061867 72062290 -145974868 + MLT1C LTR MaLR 22 467 0 251 228 43 0 chr3 72062742 72062834 -145974324 - AluS SINE Alu -206 96 1 516 203 55 77 chr3 72062837 72063019 -145974139 - L1ME4a LINE L1 -10 6111 5934 653 263 55 28 chr3 72063345 72063562 -145973596 + MLT1K LTR MaLR 310 532 -56 524 253 175 0 chr3 72063793 72063947 -145973211 - MER5A DNA MER1_type 0 189 9 456 280 65 54 chr3 72063960 72064043 -145973115 + MIR SINE MIR 4 85 -177 2149 132 0 16 chr3 72064043 72064354 -145972804 - AluSx SINE Alu -6 306 1 456 280 65 54 chr3 72064354 72064456 -145972702 + MIR SINE MIR 85 191 -71 342 361 49 7 chr3 72064506 72064650 -145972508 + MER5A DNA MER1_type 3 152 -37 8495 184 15 5 chr3 72064650 72067222 -145969936 + L1PA16 LINE L1 3566 6165 -1 11538 181 56 29 chr3 72067683 72070038 -145967120 + Cheshire DNA MER1_type 1 2419 -1 333 271 141 76 chr3 72070159 72070436 -145966722 + L2 LINE L2 2931 3225 -47 554 269 70 86 chr3 72071894 72072151 -145965007 - MIR SINE MIR -2 260 8 434 214 22 0 chr3 72072887 72072976 -145964182 + MER5A DNA MER1_type 2 92 -97 189 0 0 0 chr3 72072990 72073011 -145964147 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 1420 185 25 43 chr3 72073015 72073296 -145963862 - AluJo SINE Alu -36 276 1 335 155 0 0 chr3 72073303 72073361 -145963797 + MER5A DNA MER1_type 132 189 0 333 232 78 56 chr3 72073362 72073504 -145963654 + MER103 DNA DNA 20 164 -2 18831 48 4 0 chr3 72073716 72076046 -145961112 - L1P LINE L1 -828 5318 2981 1338 122 0 0 chr3 72076047 72076235 -145960923 + AluSp SINE Alu 122 309 -4 506 233 156 4 chr3 72076238 72076404 -145960754 + MIR SINE MIR 6 191 -67 189 0 0 0 chr3 72076412 72076433 -145960725 + (TG)n Simple_repeat Simple_repeat 2 22 0 233 256 0 39 chr3 72076475 72076553 -145960605 + MIR SINE MIR 185 259 -3 356 158 13 26 chr3 72077733 72077809 -145959349 + L2 LINE L2 3213 3287 -26 257 0 0 29 chr3 72077822 72077856 -145959302 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 291 268 6 134 chr3 72077893 72078057 -145959101 - L2 LINE L2 -212 3060 2918 248 288 42 17 chr3 72079233 72079351 -145957807 + CT-rich Low_complexity Low_complexity 1 121 0 385 301 120 43 chr3 72079503 72079779 -145957379 + L1ME LINE L1 5516 5812 -309 227 273 0 0 chr3 72080036 72080091 -145957067 + L1ME LINE L1 5872 5926 -236 21 0 0 0 chr3 72080164 72080185 -145956973 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 72080231 72080254 -145956904 + AT_rich Low_complexity Low_complexity 1 23 0 183 298 0 0 chr3 72080352 72080399 -145956759 - MIR SINE MIR -3 259 213 367 318 109 36 chr3 72081871 72082091 -145955067 - MIR SINE MIR -2 260 25 2005 128 39 0 chr3 72082814 72083096 -145954062 + AluSx SINE Alu 4 296 -16 2105 101 35 0 chr3 72083197 72083485 -145953673 - AluSx SINE Alu -14 298 1 660 240 111 90 chr3 72083528 72083843 -145953315 + L2 LINE L2 2607 2942 -371 1802 186 0 0 chr3 72083843 72084134 -145953024 + AluSx SINE Alu 6 296 -16 660 240 111 90 chr3 72084134 72084322 -145952836 + L2 LINE L2 2942 3125 -188 2073 179 36 31 chr3 72084490 72085040 -145952118 - MLT2A2 LTR ERVL 0 554 1 2300 71 0 0 chr3 72085828 72086135 -145951023 + AluY SINE Alu 1 307 0 434 355 28 0 chr3 72086210 72086351 -145950807 + L2 LINE L2 3164 3308 -5 209 350 0 0 chr3 72086764 72086824 -145950334 + MIR SINE MIR 10 69 -193 677 184 135 5 chr3 72087257 72087419 -145949739 - MER5A DNA MER1_type 0 189 4 462 321 97 8 chr3 72087597 72087731 -145949427 - L2 LINE L2 0 3272 3127 254 281 294 26 chr3 72087841 72088069 -145949089 - L2 LINE L2 -337 2977 2689 365 262 129 29 chr3 72088069 72088276 -145948882 + L1MC5 LINE L1 7249 7472 -534 * 390 260 149 55 chr3 72088275 72088583 -145948575 + L1MC4 LINE L1 7540 7876 -166 1482 194 112 66 chr3 72088583 72088636 -145948522 + MLT1F1 LTR MaLR 93 142 -425 2463 138 22 0 chr3 72088636 72088992 -145948166 + THE1B LTR MaLR 1 364 0 1482 194 112 66 chr3 72088992 72089392 -145947766 + MLT1F1 LTR MaLR 142 567 0 330 231 28 0 chr3 72089392 72089485 -145947673 - L1PA8A LINE L1 -334 5797 5697 2015 132 18 0 chr3 72089589 72089870 -145947288 - AluSx SINE Alu -15 297 12 231 300 0 0 chr3 72090064 72090134 -145947024 + T-rich Low_complexity Low_complexity 13 82 0 29 28 0 0 chr3 72090264 72090300 -145946858 + AT_rich Low_complexity Low_complexity 1 36 0 513 257 59 0 chr3 72090456 72090592 -145946566 - MIR SINE MIR -27 235 92 2389 58 0 10 chr3 72091344 72091637 -145945521 + L1PA5 LINE L1 5865 6154 0 388 283 17 17 chr3 72092087 72092207 -145944951 + MIR SINE MIR 109 228 -34 213 71 0 0 chr3 72092221 72092249 -145944909 - MER91B DNA MER1_type -128 62 35 312 113 0 19 chr3 72092288 72092354 -145944804 - MLT2D LTR ERVL -7 508 396 359 41 20 0 chr3 72092357 72092406 -145944752 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 2169 164 11 0 chr3 72092541 72092889 -145944269 - MLT2D LTR ERVL -62 352 1 1839 183 44 55 chr3 72092905 72093212 -145943946 + MLT1A1 LTR MaLR 3 307 -58 2103 104 45 3 chr3 72093212 72093500 -145943658 - AluSg SINE Alu -10 300 1 1839 183 44 55 chr3 72093500 72093559 -145943599 + MLT1A1 LTR MaLR 307 365 0 453 326 43 30 chr3 72093752 72093982 -145943176 - MIR SINE MIR -16 246 14 378 281 56 56 chr3 72094089 72094249 -145942909 - MER5A DNA MER1_type -14 175 16 2482 179 52 58 chr3 72094793 72095297 -145941861 + MLT1D LTR MaLR 5 505 0 207 0 0 0 chr3 72095729 72095752 -145941406 + (CA)n Simple_repeat Simple_repeat 2 24 0 1692 78 0 0 chr3 72095759 72095965 -145941193 - AluSq SINE Alu -107 206 1 1366 179 0 4 chr3 72096636 72096865 -145940293 - AluJo SINE Alu -31 281 54 738 139 0 0 chr3 72097022 72097123 -145940035 + U6 snRNA snRNA 4 104 -3 25 0 0 0 chr3 72097123 72097148 -145940010 + AT_rich Low_complexity Low_complexity 1 25 0 221 259 0 80 chr3 72097306 72097418 -145939740 + L2 LINE L2 3051 3153 -160 224 189 22 100 chr3 72097633 72097723 -145939435 + L2 LINE L2 3160 3242 -71 752 225 149 83 chr3 72097723 72098146 -145939012 + MLT1J LTR MaLR 1 451 -60 1666 168 44 97 chr3 72098169 72098580 -145938578 + MLT1B LTR MaLR 1 389 -1 201 320 27 0 chr3 72098607 72098682 -145938476 + L2 LINE L2 3237 3313 0 632 278 102 86 chr3 72099036 72099468 -145937690 + MLT1J LTR MaLR 5 443 -68 2545 50 0 3 chr3 72099486 72099787 -145937371 - AluY SINE Alu -11 300 1 255 263 193 53 chr3 72099969 72100083 -145937075 - MIR SINE MIR -87 175 46 288 0 0 0 chr3 72100170 72100202 -145936956 + (CA)n Simple_repeat Simple_repeat 1 32 0 243 286 112 0 chr3 72100299 72100397 -145936761 + MLT1K LTR MaLR 151 259 -329 274 313 104 12 chr3 72100402 72100565 -145936593 + MIR SINE MIR 70 247 -15 237 273 0 0 chr3 72102203 72102269 -145934889 + L1MC4 LINE L1 6640 6705 -1337 209 132 0 57 chr3 72102269 72102322 -145934836 + (CA)n Simple_repeat Simple_repeat 2 51 0 1483 153 10 69 chr3 72102509 72102797 -145934361 - AluJb SINE Alu -11 301 31 649 312 119 33 chr3 72103034 72103463 -145933695 - L2 LINE L2 -5 3308 2843 716 235 59 0 chr3 72103603 72103773 -145933385 + MER5A DNA MER1_type 1 180 -9 409 224 31 115 chr3 72103783 72103822 -145933336 - MER5B DNA MER1_type 0 178 137 1833 131 8 4 chr3 72103822 72104089 -145933069 + AluSx SINE Alu 36 303 -9 409 224 31 115 chr3 72104089 72104241 -145932917 - MER5B DNA MER1_type -41 137 3 573 224 130 21 chr3 72104243 72104435 -145932723 - L2 LINE L2 -623 2691 2479 362 283 157 21 chr3 72104910 72105101 -145932057 - MIR SINE MIR -12 250 34 404 223 126 10 chr3 72105223 72105326 -145931832 + MIR SINE MIR 31 145 -117 823 173 0 0 chr3 72105329 72105462 -145931696 + FLAM_C SINE Alu 1 133 0 1201 200 5 0 chr3 72105631 72105836 -145931322 + MER3 DNA MER1_type 3 208 -1 207 107 0 0 chr3 72105924 72105952 -145931206 + L2 LINE L2 3226 3253 -19 189 0 0 0 chr3 72106334 72106355 -145930803 + (TC)n Simple_repeat Simple_repeat 2 22 0 1612 190 7 10 chr3 72106355 72106655 -145930503 - AluJb SINE Alu -7 305 7 45196 40 1 3 chr3 72107434 72113600 -145923558 - L1PA4 LINE L1 -3 6152 1 353 250 205 6 chr3 72114112 72114268 -145922890 + LTR33 LTR ERVL 1 187 -334 183 222 0 0 chr3 72114727 72114772 -145922386 + CT-rich Low_complexity Low_complexity 4 48 0 255 290 333 22 chr3 72114782 72114920 -145922238 + MIR SINE MIR 12 192 -70 2124 136 0 0 chr3 72114938 72115248 -145921910 + AluSx SINE Alu 1 310 -2 300 27 0 0 chr3 72115948 72115985 -145921173 + (TG)n Simple_repeat Simple_repeat 1 37 0 182 233 219 0 chr3 72116893 72116966 -145920192 - MIR3 SINE MIR -11 197 109 528 282 64 32 chr3 72117242 72117462 -145919696 - MIR SINE MIR -34 228 2 263 247 13 39 chr3 72118365 72118442 -145918716 + L2 LINE L2 3235 3309 -4 944 187 15 20 chr3 72119369 72119567 -145917591 - MER20 DNA MER1_type 0 219 23 739 265 91 13 chr3 72120041 72120271 -145916887 + Charlie8 DNA MER1_type 30 277 -2140 406 293 63 21 chr3 72120397 72120588 -145916570 - MIR3 SINE MIR -8 200 2 2539 71 0 0 chr3 72120944 72121255 -145915903 - AluY SINE Alu 0 311 1 428 289 145 31 chr3 72121350 72121668 -145915490 - L3 LINE CR1 -13 1564 1211 435 273 0 49 chr3 72121688 72121831 -145915327 - L2 LINE L2 -6 3307 3172 325 224 47 3 chr3 72121858 72121953 -145915205 - MIR SINE MIR -65 143 59 1620 176 61 7 chr3 72122307 72122603 -145914555 - AluJb SINE Alu 0 312 1 3331 145 28 18 chr3 72122791 72123336 -145913822 - L1MB5 LINE L1 -13 6161 5612 223 303 76 0 chr3 72125639 72125705 -145911453 + L2 LINE L2 3202 3272 0 1938 152 3 10 chr3 72126058 72126367 -145910791 - AluJo SINE Alu -5 307 1 800 114 8 0 chr3 72126461 72126592 -145910566 + (TTCC)n Simple_repeat Simple_repeat 1 132 0 416 311 47 97 chr3 72126614 72126935 -145910223 - L2 LINE L2 -1 3271 2967 230 336 74 20 chr3 72127390 72127539 -145909619 - MIR SINE MIR -24 238 82 503 340 45 24 chr3 72127949 72128196 -145908962 + MIR SINE MIR 11 262 0 465 257 89 0 chr3 72128222 72128323 -145908835 + MER91C DNA MER1_type 31 140 0 237 296 194 0 chr3 72128806 72128914 -145908244 + MER94 DNA DNA 5 133 -1 411 301 61 18 chr3 72129810 72129973 -145907185 - MIR SINE MIR -64 198 29 514 300 39 43 chr3 72130232 72130465 -145906693 + MIR SINE MIR 3 234 -28 181 163 0 47 chr3 72134255 72134298 -145902860 - MIR SINE MIR 0 262 222 * 188 255 0 43 chr3 72134264 72134311 -145902847 - L2 LINE L2 -13 3259 3215 827 133 44 83 chr3 72134350 72134530 -145902628 - MER20 DNA MER1_type -41 178 6 220 229 0 29 chr3 72134608 72134678 -145902480 + A-rich Low_complexity Low_complexity 4 71 0 653 259 0 17 chr3 72135099 72135273 -145901885 - MER104 DNA Tc2 -3 177 7 220 250 77 0 chr3 72137584 72137636 -145899522 - MIR SINE MIR -142 120 65 2272 74 49 0 chr3 72138013 72138298 -145898860 - AluSc SINE Alu -10 299 1 239 333 20 10 chr3 72138649 72138751 -145898407 - MIR SINE MIR -2 260 158 287 205 51 26 chr3 72138756 72138834 -145898324 + MER116 DNA Mariner 1 80 0 1913 117 13 17 chr3 72139184 72139483 -145897675 + AluSg SINE Alu 5 302 -8 263 299 19 19 chr3 72139495 72139602 -145897556 - MLT1K LTR MaLR -60 528 422 415 226 47 124 chr3 72139807 72140041 -145897117 - MLT1K LTR MaLR -369 219 4 437 288 176 5 chr3 72140225 72140430 -145896728 + MIR SINE MIR 7 246 -16 1368 182 45 28 chr3 72140546 72140837 -145896321 - AluJo SINE Alu -12 300 5 1799 162 0 26 chr3 72140845 72141148 -145896010 - AluSx SINE Alu -17 295 1 545 247 62 20 chr3 72141643 72141789 -145895369 - MLT1K LTR MaLR -114 474 323 610 272 30 30 chr3 72141816 72142018 -145895140 + MLT1H LTR MaLR 29 230 -319 289 319 11 0 chr3 72142344 72142438 -145894720 - MLT1K LTR MaLR -484 104 10 390 284 137 0 chr3 72143739 72143922 -145893236 + LTR50 LTR ERVL 2 209 -586 1767 190 3 0 chr3 72144044 72144344 -145892814 + AluJo SINE Alu 1 301 -11 336 24 0 0 chr3 72144363 72144404 -145892754 + (TG)n Simple_repeat Simple_repeat 2 42 0 254 179 18 0 chr3 72144783 72144839 -145892319 + GA-rich Low_complexity Low_complexity 2 58 0 270 297 59 0 chr3 72144914 72145015 -145892143 + MIR SINE MIR 14 120 -142 307 356 12 12 chr3 72145188 72145348 -145891810 + L3 LINE CR1 1309 1468 -109 2072 113 0 45 chr3 72145377 72145687 -145891471 - AluSc SINE Alu -13 296 1 217 361 46 0 chr3 72145720 72145828 -145891330 + MIR SINE MIR 53 165 -97 443 354 75 62 chr3 72145889 72146556 -145890602 - L2 LINE L2 -37 3235 2554 24 0 0 0 chr3 72147060 72147084 -145890074 + AT_rich Low_complexity Low_complexity 1 24 0 206 32 32 0 chr3 72147428 72147459 -145889699 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 187 293 0 0 chr3 72147535 72147576 -145889582 + L3b LINE CR1 1532 1572 -11 216 97 0 0 chr3 72147795 72147826 -145889332 + (CA)n Simple_repeat Simple_repeat 2 32 0 632 227 20 13 chr3 72147967 72148117 -145889041 - Charlie8 DNA MER1_type -2225 192 42 217 225 78 127 chr3 72148242 72148314 -145888844 - MIR SINE MIR -24 238 175 2297 147 8 3 chr3 72148314 72148667 -145888491 + THE1A LTR MaLR 1 355 0 217 225 78 127 chr3 72148667 72148736 -145888422 - MIR SINE MIR -87 175 104 1997 144 89 15 chr3 72148950 72149132 -145888026 - MLT1B LTR MaLR 0 390 223 228 86 0 0 chr3 72149132 72149167 -145887991 + (TG)n Simple_repeat Simple_repeat 2 36 0 1997 144 89 15 chr3 72149167 72149358 -145887800 - MLT1B LTR MaLR -167 223 1 795 233 95 55 chr3 72149696 72150095 -145887063 + L1ME4a LINE L1 5706 6120 -1 225 352 22 0 chr3 72150868 72150959 -145886199 - L3 LINE CR1 -115 1462 1370 414 178 93 9 chr3 72151941 72152048 -145885110 + MIR SINE MIR 102 217 -45 910 246 82 0 chr3 72152178 72152385 -145884773 + MER58A DNA MER1_type 1 224 0 277 321 36 15 chr3 72152645 72152782 -145884376 + MLT1J2 LTR MaLR 1 140 -310 816 213 75 0 chr3 72152881 72153069 -145884089 + MER3 DNA MER1_type 8 209 0 450 338 97 14 chr3 72154011 72154218 -145882940 + MIR SINE MIR 17 240 -22 462 207 82 67 chr3 72154439 72154574 -145882584 - MER5B DNA MER1_type -41 137 1 664 228 19 13 chr3 72155697 72155855 -145881303 - MER5B DNA MER1_type -19 159 1 23 54 0 0 chr3 72156432 72156469 -145880689 + AT_rich Low_complexity Low_complexity 1 37 0 240 287 15 59 chr3 72156700 72156836 -145880322 - L1MC/D LINE L1 -1982 5826 5697 207 69 0 0 chr3 72157538 72157567 -145879591 + (A)n Simple_repeat Simple_repeat 1 29 0 306 279 0 0 chr3 72158492 72158578 -145878580 - MER91B DNA MER1_type -11 179 94 273 261 15 0 chr3 72158837 72158902 -145878256 - L2 LINE L2 0 3272 3207 838 191 17 28 chr3 72159099 72159277 -145877881 - MER96B DNA MER1_type? -239 178 3 204 378 11 0 chr3 72159393 72159483 -145877675 + MIR3 SINE MIR 65 155 -53 362 275 51 0 chr3 72159514 72159652 -145877506 - L2 LINE L2 -5 3308 3164 1615 191 17 0 chr3 72159831 72160129 -145877029 - AluJo SINE Alu -9 303 1 319 265 95 58 chr3 72160129 72160318 -145876840 - MIR SINE MIR -1 261 66 204 209 0 0 chr3 72160378 72160421 -145876737 - L2 LINE L2 -10 3303 3261 200 182 0 0 chr3 72160442 72160475 -145876683 + CT-rich Low_complexity Low_complexity 1 33 0 611 214 8 0 chr3 72160528 72160659 -145876499 + L1ME1 LINE L1 6026 6157 -9 234 211 13 26 chr3 72160900 72160976 -145876182 + GA-rich Low_complexity Low_complexity 1 75 0 23 0 0 0 chr3 72161279 72161302 -145875856 + GC_rich Low_complexity Low_complexity 1 23 0 236 111 22 0 chr3 72162061 72162106 -145875052 + (TA)n Simple_repeat Simple_repeat 2 47 0 281 316 41 60 chr3 72163435 72163653 -145873505 + MIR SINE MIR 49 262 0 264 270 0 0 chr3 72164497 72164560 -145872598 + MIR SINE MIR 79 141 -121 275 179 218 0 chr3 72164576 72164654 -145872504 - L2 LINE L2 -12 3301 3207 426 187 0 0 chr3 72164666 72164741 -145872417 - L2 LINE L2 -243 3070 2996 433 245 166 0 chr3 72164774 72164913 -145872245 + MER5A DNA MER1_type 28 189 0 504 270 82 25 chr3 72165600 72165796 -145871362 - MIR SINE MIR -20 242 36 606 279 118 62 chr3 72165837 72166160 -145870998 + MER102b DNA MER1_type 1 341 0 483 250 87 43 chr3 72166238 72166422 -145870736 - MIR SINE MIR -50 212 21 481 230 6 37 chr3 72166445 72166583 -145870575 - MER5A DNA MER1_type -53 136 4 942 228 70 9 chr3 72166595 72166810 -145870348 + MER58B DNA MER1_type 3 230 -111 654 207 0 0 chr3 72166874 72166985 -145870173 + MER58B DNA MER1_type 231 341 0 1622 192 43 6 chr3 72168020 72168348 -145868810 + MER58B DNA MER1_type 1 340 -1 270 167 0 0 chr3 72168594 72168664 -145868494 - Alu SINE Alu 0 307 238 371 110 0 41 chr3 72168701 72168774 -145868384 + L1MA8 LINE L1 6221 6290 -1 547 231 14 7 chr3 72169159 72169306 -145867852 + MER53 DNA DNA 1 148 -41 1284 190 4 0 chr3 72169317 72169543 -145867615 - AluJb SINE Alu -30 282 56 336 118 0 0 chr3 72169543 72169594 -145867564 + MER53 DNA DNA 134 184 -5 637 227 28 34 chr3 72169791 72169967 -145867191 - MER5B DNA MER1_type 0 178 4 2246 156 11 3 chr3 72169980 72170340 -145866818 - MER47A DNA MER2_type -3 363 1 311 165 143 11 chr3 72170406 72170497 -145866661 - MER5A DNA MER1_type -84 105 3 216 248 198 23 chr3 72171293 72171424 -145865734 - MIR SINE MIR -68 140 24 240 224 0 35 chr3 72172070 72172128 -145865030 + MIR SINE MIR 88 143 -65 1027 114 95 57 chr3 72172527 72172738 -145864420 + MER20 DNA MER1_type 1 219 0 22 0 0 0 chr3 72172905 72172927 -145864231 + AT_rich Low_complexity Low_complexity 1 22 0 232 344 31 0 chr3 72173268 72173364 -145863794 - L1ME LINE L1 -481 5640 5542 486 326 68 4 chr3 72173925 72174161 -145862997 + MIR SINE MIR 5 255 -7 1955 139 79 48 chr3 72174269 72174503 -145862655 - THE1B LTR MaLR 0 364 113 2104 120 0 0 chr3 72174503 72174800 -145862358 + AluSg SINE Alu 11 307 0 1955 139 79 48 chr3 72174800 72174917 -145862241 - THE1B LTR MaLR -251 113 1 11547 94 15 3 chr3 72174918 72176478 -145860680 - THE1B-int LTR MaLR -1 1579 1 1906 141 72 69 chr3 72176478 72176530 -145860628 - THE1B LTR MaLR 0 364 314 1957 150 10 0 chr3 72176530 72176823 -145860335 - AluSx SINE Alu -10 302 7 1906 141 72 69 chr3 72176823 72177133 -145860025 - THE1B LTR MaLR -50 314 1 485 309 129 18 chr3 72177731 72178009 -145859149 + MER102b DNA MER1_type 33 341 0 351 285 112 28 chr3 72178169 72178383 -145858775 - MIR SINE MIR -15 247 16 376 96 0 0 chr3 72179081 72179133 -145858025 - MADE1 DNA Mariner -28 52 1 194 287 148 77 chr3 72179640 72179761 -145857397 - MIR SINE MIR -17 245 134 16277 117 18 4 chr3 72179761 72179960 -145857198 - Tigger1 DNA MER2_type 0 2418 2223 1788 150 13 42 chr3 72179960 72180273 -145856885 + AluJb SINE Alu 1 304 -8 16277 117 18 4 chr3 72180273 72182457 -145854701 - Tigger1 DNA MER2_type -195 2223 1 194 287 148 77 chr3 72182457 72182544 -145854614 - MIR SINE MIR -128 134 22 603 198 173 6 chr3 72182587 72182749 -145854409 - MER5A DNA MER1_type 0 189 1 772 230 51 0 chr3 72183279 72183457 -145853701 + L1PB4 LINE L1 5968 6154 -2 308 269 184 92 chr3 72183611 72184034 -145853124 + L2 LINE L2 2852 3313 0 285 231 64 39 chr3 72285596 72285674 -145751484 - L2 LINE L2 -17 3255 3176 668 98 10 0 chr3 72285962 72286064 -145751094 + (TC)n Simple_repeat Simple_repeat 1 103 0 247 158 0 0 chr3 72286064 72286102 -145751056 + polypyrimidine Low_complexity Low_complexity 3 40 0 26 0 0 0 chr3 72287423 72287449 -145749709 + GC_rich Low_complexity Low_complexity 1 26 0 1136 102 19 48 chr3 72287915 72288121 -145749037 - AluSg/x SINE Alu -21 291 92 463 211 41 16 chr3 72288122 72288245 -145748913 + L1MB5 LINE L1 6049 6174 0 1988 130 20 7 chr3 72288277 72288578 -145748580 + AluSx SINE Alu 1 305 -7 1224 273 46 39 chr3 72288676 72289425 -145747733 + L1MEc LINE L1 1736 2452 -3763 200 324 63 9 chr3 72289425 72289536 -145747622 - L2 LINE L2 -1122 2192 2076 249 57 0 0 chr3 72292452 72292487 -145744671 + (T)n Simple_repeat Simple_repeat 1 35 0 442 260 112 14 chr3 72293498 72293775 -145743383 - L1ME4a LINE L1 -16 6105 5802 1233 264 131 69 chr3 72293929 72296084 -145741074 - L1ME3A LINE L1 -1 6169 3875 847 227 67 121 chr3 72296087 72296606 -145740552 - MLT1H1 LTR MaLR 0 555 65 303 260 59 83 chr3 72296656 72296825 -145740333 - L1ME3A LINE L1 -2275 3871 3707 2131 174 19 16 chr3 72296865 72297239 -145739919 + THE1C LTR MaLR 1 375 0 952 256 95 37 chr3 72297843 72298339 -145738819 + MLT1G LTR MaLR 1 531 -24 2322 84 0 0 chr3 72298410 72298706 -145738452 - AluY SINE Alu -15 296 1 397 140 0 0 chr3 72298706 72298763 -145738395 - LTR8 LTR ERV1 -114 577 521 2483 74 0 3 chr3 72298774 72299083 -145738075 - AluY SINE Alu -3 308 1 425 305 99 7 chr3 72299121 72299272 -145737886 - MIR SINE MIR -71 191 27 902 199 11 6 chr3 72299785 72299961 -145737197 + MER5B DNA MER1_type 2 178 0 217 297 76 65 chr3 72300146 72300331 -145736827 - L2 LINE L2 -916 2398 2212 483 345 16 67 chr3 72300690 72300945 -145736213 + L2 LINE L2 2804 3045 -268 426 127 0 0 chr3 72301127 72301198 -145735960 + (TGAG)n Simple_repeat Simple_repeat 1 71 0 439 217 17 23 chr3 72301309 72301406 -145735752 - MER5B DNA MER1_type 0 178 89 306 240 13 0 chr3 72302357 72302432 -145734726 - MER5A DNA MER1_type -80 109 34 405 288 33 39 chr3 72302442 72302595 -145734563 - MER5A DNA MER1_type -4 185 34 * 451 280 27 13 chr3 72302463 72302613 -145734545 + MER5A DNA MER1_type 35 186 -3 286 322 69 40 chr3 72302665 72302839 -145734319 - MIR3 SINE MIR 0 208 30 367 192 142 33 chr3 72302869 72302989 -145734169 + L2 LINE L2 3170 3302 -11 325 167 111 44 chr3 72303146 72303236 -145733922 + L2 LINE L2 3207 3302 -11 53 30 0 0 chr3 72303339 72303406 -145733752 + AT_rich Low_complexity Low_complexity 1 67 0 27020 30 1 0 chr3 72303406 72307237 -145729921 - L1PA3 LINE L1 0 6155 2326 523 301 59 42 chr3 72307305 72307544 -145729614 + MIR SINE MIR 3 245 -17 2056 125 4 0 chr3 72307581 72307862 -145729296 + AluSx SINE Alu 1 282 -30 444 37 0 0 chr3 72307865 72307919 -145729239 + (TAA)n Simple_repeat Simple_repeat 2 55 0 888 274 100 9 chr3 72308606 72308927 -145728231 - MLT1K LTR MaLR -27 561 212 349 250 212 8 chr3 72309924 72310056 -145727102 - MIR SINE MIR -94 168 10 33 0 0 0 chr3 72310107 72310140 -145727018 + AT_rich Low_complexity Low_complexity 1 33 0 769 256 58 37 chr3 72310230 72310472 -145726686 - MIR SINE MIR -3 259 13 210 71 0 0 chr3 72310592 72310620 -145726538 + (T)n Simple_repeat Simple_repeat 1 28 0 291 214 107 0 chr3 72310755 72310839 -145726319 - L2 LINE L2 -5 3267 3175 347 248 138 62 chr3 72311110 72311400 -145725758 - MLT1L LTR MaLR -136 479 168 551 259 0 0 chr3 72311864 72311980 -145725178 - MER45A DNA AcHobo -5 173 58 1626 178 3 17 chr3 72312231 72312523 -145724635 + AluJo SINE Alu 1 288 -24 997 198 35 5 chr3 72314222 72314424 -145722734 - MER3 DNA MER1_type -1 208 1 228 293 0 0 chr3 72314465 72314523 -145722635 - L2 LINE L2 -1 3271 3214 671 226 110 6 chr3 72314533 72314697 -145722461 + MIR SINE MIR 13 193 -69 276 253 0 0 chr3 72314728 72314819 -145722339 + (TA)n Simple_repeat Simple_repeat 1 91 0 315 294 47 111 chr3 72314899 72315178 -145721980 - L2 LINE L2 -78 3194 2934 757 346 141 5 chr3 72315313 72315746 -145721412 - L2 LINE L2 -618 2696 2205 709 237 61 15 chr3 72315764 72315962 -145721196 + L1M4b LINE L1 11 217 -6642 1327 328 77 12 chr3 72315983 72316553 -145720605 + L1M4b LINE L1 326 932 -5927 2037 243 57 48 chr3 72317096 72318298 -145718860 + L1M4b LINE L1 1187 2394 -4565 328 249 110 94 chr3 72318313 72318622 -145718536 + L1MB5 LINE L1 289 602 -6044 1238 251 31 22 chr3 72318787 72319202 -145717956 + L1MB5 LINE L1 817 1235 -5307 3572 215 35 28 chr3 72319219 72320250 -145716908 + L1MB5 LINE L1 4777 5834 -838 1562 198 7 24 chr3 72320250 72320548 -145716610 + AluJb SINE Alu 1 293 -19 3572 215 35 28 chr3 72320548 72321234 -145715924 + L1MB5 LINE L1 5834 6513 -159 633 197 16 8 chr3 72321278 72321400 -145715758 - FLAM_C SINE Alu -17 126 4 2230 92 0 10 chr3 72321409 72321712 -145715446 - AluY SINE Alu -1 310 11 195 244 90 39 chr3 72321750 72321828 -145715330 - MIR SINE MIR -93 115 34 2199 109 10 0 chr3 72323474 72323777 -145713381 - AluSg1 SINE Alu -3 306 1 31 0 0 0 chr3 72323963 72323994 -145713164 + AT_rich Low_complexity Low_complexity 1 31 0 292 264 11 33 chr3 72324990 72325081 -145712077 - MIR3 SINE MIR -39 169 81 237 137 118 0 chr3 72325197 72325248 -145711910 - L2 LINE L2 0 3313 3257 276 109 0 0 chr3 72328295 72328341 -145708817 + MADE1 DNA Mariner 1 46 -34 259 237 0 0 chr3 72328546 72328605 -145708553 - L1ME3A LINE L1 -58 6112 6054 537 187 143 53 chr3 72328609 72328818 -145708340 + MER5C DNA MER1_type 97 324 0 313 255 21 43 chr3 72329722 72329816 -145707342 - MIR3 SINE MIR -28 180 89 1198 270 58 6 chr3 72329886 72330352 -145706806 - L1ME3A LINE L1 -17 6153 5664 28 48 0 0 chr3 72330642 72330684 -145706474 + AT_rich Low_complexity Low_complexity 1 42 0 256 223 165 10 chr3 72330722 72330825 -145706333 + L2 LINE L2 3189 3307 -6 252 0 0 0 chr3 72330929 72330957 -145706201 + (TG)n Simple_repeat Simple_repeat 2 29 0 485 291 167 8 chr3 72330983 72331413 -145705745 - L1MC4a LINE L1 -373 5748 5375 535 333 21 25 chr3 72331872 72332115 -145705043 + MIR SINE MIR 18 259 -3 250 301 23 45 chr3 72333028 72333161 -145703997 - L2 LINE L2 -25 3288 3159 407 312 34 34 chr3 72333626 72333831 -145703327 + MIR SINE MIR 20 224 -38 360 95 0 108 chr3 72334674 72334748 -145702410 + L1PB4 LINE L1 5728 5782 -374 180 0 0 0 chr3 72334787 72334807 -145702351 + (TA)n Simple_repeat Simple_repeat 1 20 0 435 19 0 0 chr3 72335002 72335054 -145702104 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 1553 213 35 11 chr3 72335055 72335421 -145701737 + L1PB4 LINE L1 5782 6156 0 550 280 101 11 chr3 72335628 72335817 -145701341 - MIR SINE MIR -1 261 56 678 256 62 101 chr3 72336447 72336884 -145700274 + LTR16A LTR ERVL 19 438 -12 783 290 103 3 chr3 72336984 72337284 -145699874 + MLT1J2 LTR MaLR 1 330 -120 388 301 52 36 chr3 72337376 72337604 -145699554 - L1ME LINE L1 -419 5745 5510 240 293 93 13 chr3 72337743 72337818 -145699340 - MIR SINE MIR -164 98 18 5502 61 0 0 chr3 72338218 72338907 -145698251 + L1PA5 LINE L1 5465 6153 -1 701 307 6 0 chr3 72339686 72339849 -145697309 + AluSx SINE Alu 4 167 -145 1895 147 27 7 chr3 72340905 72341204 -145695954 - AluJb SINE Alu -7 305 1 728 205 163 32 chr3 72341281 72341471 -145695687 - MER20 DNA MER1_type -2 217 3 265 272 87 19 chr3 72342021 72342124 -145695034 - MIR SINE MIR 0 262 153 710 341 83 37 chr3 72342821 72343132 -145694026 + L2 LINE L2 2498 2793 -479 835 235 27 16 chr3 72343132 72343319 -145693839 + MER5A DNA MER1_type 1 189 0 710 341 83 37 chr3 72343319 72343738 -145693420 + L2 LINE L2 2793 3259 -13 180 0 0 0 chr3 72343738 72343758 -145693400 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 357 252 110 24 chr3 72343823 72343950 -145693208 + MIR SINE MIR 119 256 -6 1965 117 34 99 chr3 72344664 72345049 -145692109 - THE1B LTR MaLR -2 362 3 1775 149 29 18 chr3 72345050 72345331 -145691827 + AluJb SINE Alu 19 302 -10 252 0 0 0 chr3 72346148 72346176 -145690982 + (T)n Simple_repeat Simple_repeat 1 28 0 519 273 7 14 chr3 72346367 72346510 -145690648 + MIR SINE MIR 13 154 -108 324 265 8 8 chr3 72346575 72346692 -145690466 - MER103 DNA DNA -6 160 44 229 257 68 40 chr3 72346750 72346824 -145690334 + MIR SINE MIR 161 236 -26 386 340 43 27 chr3 72346996 72347184 -145689974 - MIR SINE MIR -13 249 59 407 329 120 54 chr3 72347423 72347739 -145689419 + L2 LINE L2 2936 3272 0 234 0 0 0 chr3 72348400 72348426 -145688732 + (T)n Simple_repeat Simple_repeat 1 26 0 317 226 0 43 chr3 72348525 72348618 -145688540 - MIR3 SINE MIR -8 200 112 278 320 145 64 chr3 72348953 72349359 -145687799 + L2 LINE L2 2831 3269 -3 303 240 256 8 chr3 72349757 72349878 -145687280 - L2 LINE L2 0 3313 3163 282 237 0 53 chr3 72349924 72350000 -145687158 + MIR SINE MIR 181 252 -10 399 330 104 6 chr3 72350081 72350263 -145686895 - MIR SINE MIR 0 262 63 194 269 35 92 chr3 72350671 72350812 -145686346 + MIR SINE MIR 64 196 -66 839 187 33 50 chr3 72350845 72351027 -145686131 + MER20 DNA MER1_type 41 219 0 183 80 0 0 chr3 72351813 72351838 -145685320 + (A)n Simple_repeat Simple_repeat 1 25 0 234 286 106 35 chr3 72353258 72353381 -145683777 + MIR SINE MIR 7 141 -67 526 306 66 6 chr3 72353887 72354070 -145683088 + MIR SINE MIR 52 245 -17 1854 187 14 0 chr3 72354090 72354459 -145682699 - L1PB4 LINE L1 0 6156 5783 810 295 13 16 chr3 72356334 72356649 -145680509 - L1ME2 LINE L1 -9 6224 5911 1569 221 70 11 chr3 72356683 72357254 -145679904 - L1ME2 LINE L1 -485 5750 5155 481 258 20 7 chr3 72357271 72357422 -145679736 - L1ME2 LINE L1 -1108 5107 4955 881 242 54 39 chr3 72357431 72357873 -145679285 - L1ME2 LINE L1 -5269 1127 679 3347 189 55 6 chr3 72357920 72358612 -145678546 - MER44D DNA MER2_type -7 598 1 682 321 40 55 chr3 72358613 72358872 -145678286 - L1ME2 LINE L1 -5749 647 386 1920 144 3 44 chr3 72358872 72359046 -145678112 - AluSx SINE Alu -5 307 150 2374 105 0 0 chr3 72359046 72359350 -145677808 - AluSg SINE Alu -6 304 1 1920 144 3 44 chr3 72359350 72359495 -145677663 - AluSx SINE Alu -162 150 1 682 321 40 55 chr3 72359495 72359784 -145677374 - L1ME2 LINE L1 -6010 386 107 335 296 44 6 chr3 72360019 72360178 -145676980 + MER113 DNA MER1_type? 4 168 -353 352 308 39 15 chr3 72360398 72360528 -145676630 - MIR3 SINE MIR -3 205 73 * 495 296 8 15 chr3 72360523 72360655 -145676503 - L2 LINE L2 -1 3312 3182 330 368 54 25 chr3 72361536 72361740 -145675418 - MIR SINE MIR -4 258 49 24 0 0 0 chr3 72361794 72361818 -145675340 + AT_rich Low_complexity Low_complexity 1 24 0 449 264 75 118 chr3 72363090 72363186 -145673972 + MIR SINE MIR 20 119 -143 1589 206 0 0 chr3 72363186 72363472 -145673686 - AluJo SINE Alu -22 290 5 449 264 75 118 chr3 72363472 72363629 -145673529 + MIR SINE MIR 119 262 0 217 244 49 172 chr3 72363698 72363874 -145673284 + L2 LINE L2 3002 3116 -197 2521 75 3 0 chr3 72363874 72364179 -145672979 - AluSp SINE Alu -7 306 1 217 244 49 172 chr3 72364179 72364350 -145672808 + L2 LINE L2 3116 3306 -7 349 332 67 27 chr3 72364360 72364583 -145672575 + MIR SINE MIR 29 260 -2 192 298 193 0 chr3 72365205 72365262 -145671896 + MIR SINE MIR 48 115 -147 1652 163 3 24 chr3 72365281 72365569 -145671589 - AluJo SINE Alu -30 282 1 213 238 206 0 chr3 72365580 72365643 -145671515 - MIR SINE MIR -1 261 186 407 266 153 0 chr3 72365650 72365774 -145671384 - L2 LINE L2 -3 3310 3168 263 309 25 25 chr3 72366014 72366151 -145671007 - MIR SINE MIR -63 145 13 1520 168 35 49 chr3 72366229 72366514 -145670644 + AluJo SINE Alu 1 281 -31 194 233 27 68 chr3 72366526 72366599 -145670559 - MER5B DNA MER1_type -78 100 31 247 282 39 13 chr3 72366693 72366776 -145670382 + MIR SINE MIR 48 132 -76 421 276 13 64 chr3 72366793 72366949 -145670209 + MER5B DNA MER1_type 1 148 -30 236 224 129 35 chr3 72366917 72367002 -145670156 + L3 LINE CR1 1483 1575 -2 * 344 236 0 0 chr3 72367607 72367679 -145669479 + MER103 DNA DNA 47 118 -48 514 305 33 0 chr3 72367803 72367954 -145669204 - MIR SINE MIR -42 220 65 532 278 72 33 chr3 72367961 72368141 -145669017 + MIR SINE MIR 28 214 -48 204 175 18 70 chr3 72368451 72368508 -145668650 + MER5B DNA MER1_type 17 70 -108 * 377 298 99 7 chr3 72368459 72368610 -145668548 - MER5A DNA MER1_type -24 165 1 249 241 17 17 chr3 72368826 72368884 -145668274 + MIR SINE MIR 12 69 -193 513 333 5 14 chr3 72369421 72369628 -145667530 + MIR SINE MIR 57 261 -1 595 283 27 22 chr3 72369649 72369833 -145667325 + MIR SINE MIR 72 256 -6 266 328 16 0 chr3 72370166 72370230 -145666928 - L2 LINE L2 -46 3226 3162 520 307 135 8 chr3 72370298 72370542 -145666616 - L2 LINE L2 -373 2941 2667 1344 220 100 81 chr3 72370764 72371288 -145665870 + MLT1F1 LTR MaLR 34 567 0 483 272 25 19 chr3 72372013 72372175 -145664983 + MIR SINE MIR 68 230 -32 301 302 70 42 chr3 72372947 72373162 -145663996 + L2 LINE L2 3031 3251 -62 * 613 236 51 34 chr3 72373143 72373301 -145663857 - MIR SINE MIR -69 193 30 1401 154 41 99 chr3 72373301 72373645 -145663513 + MER33 DNA MER1_type 1 324 0 613 236 51 34 chr3 72373645 72373664 -145663494 - MIR SINE MIR -232 30 13 508 312 96 38 chr3 72373899 72374297 -145662861 - MLT1K LTR MaLR -27 561 141 1451 165 9 92 chr3 72374659 72374974 -145662184 + AluJo SINE Alu 1 289 -23 250 232 62 27 chr3 72377085 72377197 -145659961 + L2 LINE L2 2919 3034 -238 272 215 0 15 chr3 72377491 72377556 -145659602 + L2 LINE L2 3250 3313 0 1131 242 84 16 chr3 72377827 72378149 -145659009 + MLT1F LTR MaLR 7 350 -192 2395 83 0 3 chr3 72378668 72378969 -145658189 + AluY SINE Alu 1 300 -11 3173 117 39 35 chr3 72379417 72379962 -145657196 - LTR10A LTR ERV1 -62 547 1 443 319 59 12 chr3 72380168 72380337 -145656821 - MIR SINE MIR -77 185 9 421 332 11 32 chr3 72381421 72381611 -145655547 + MER117 DNA MER1_type 7 192 -5 252 301 97 10 chr3 72382001 72382104 -145655054 + MIR SINE MIR 78 189 -73 386 172 336 45 chr3 72382347 72382481 -145654677 + MER53 DNA DNA 1 173 -16 2329 76 0 48 chr3 72382536 72382851 -145654307 - AluY SINE Alu -11 300 1 239 265 24 24 chr3 72382854 72382937 -145654221 + MIR SINE MIR 175 257 -5 885 277 12 0 chr3 72382964 72383206 -145653952 + MIR SINE MIR 16 260 -2 383 259 107 11 chr3 72383323 72383463 -145653695 - MIR SINE MIR -62 146 15 22 88 0 0 chr3 72383554 72383611 -145653547 + AT_rich Low_complexity Low_complexity 1 57 0 214 336 60 15 chr3 72383660 72383794 -145653364 - MIR SINE MIR -100 162 23 2013 110 65 0 chr3 72384169 72384459 -145652699 + AluSp SINE Alu 1 309 -4 231 311 0 0 chr3 72385094 72385155 -145652003 - MLT1K LTR MaLR -5 583 523 251 209 93 124 chr3 72385312 72385441 -145651717 - MLT1K LTR MaLR -243 345 221 27 87 0 0 chr3 72385571 72385640 -145651518 + AT_rich Low_complexity Low_complexity 1 69 0 569 256 68 11 chr3 72385842 72386022 -145651136 - MIR SINE MIR -40 222 38 573 321 113 16 chr3 72387317 72387681 -145649477 + L2 LINE L2 2827 3225 -88 1009 299 86 12 chr3 72388137 72388545 -145648613 + LTR16C LTR ERVL 35 472 -19 315 203 196 128 chr3 72388580 72388728 -145648430 + MER103 DNA DNA 6 163 -3 610 200 47 40 chr3 72389551 72389701 -145647457 + MIR SINE MIR 110 260 -2 218 304 29 14 chr3 72389726 72389795 -145647363 - MIR SINE MIR -188 74 5 23 0 0 0 chr3 72389966 72389989 -145647169 + AT_rich Low_complexity Low_complexity 1 23 0 183 333 42 0 chr3 72391688 72391760 -145645398 + L2 LINE L2 2938 3012 -260 423 273 75 43 chr3 72392391 72392578 -145644580 + MER117 DNA MER1_type 1 193 -4 1217 259 18 26 chr3 72392678 72393021 -145644137 - MER93a LTR ERV1 0 402 63 228 318 246 0 chr3 72393123 72393302 -145643856 + MIR SINE MIR 40 262 0 249 378 15 7 chr3 72393921 72394056 -145643102 - MIR SINE MIR -16 246 111 267 362 42 9 chr3 72395183 72395387 -145641771 + L1ME LINE L1 34 589 -5941 365 297 139 25 chr3 72395669 72395871 -145641287 - MIR SINE MIR -13 249 25 261 229 43 14 chr3 72396777 72396847 -145640311 - MER112 DNA MER1_type -181 79 8 288 301 105 35 chr3 72397118 72397261 -145639897 - MIR SINE MIR -74 188 36 545 305 151 55 chr3 72397455 72398114 -145639044 + L2 LINE L2 2535 3237 -35 352 284 114 35 chr3 72398779 72398980 -145638178 - MIR SINE MIR -44 218 2 184 361 36 0 chr3 72399038 72399121 -145638037 - L2 LINE L2 -50 3222 3137 613 282 29 37 chr3 72399151 72399392 -145637766 - MIR SINE MIR -17 245 7 182 255 0 59 chr3 72399450 72399501 -145637657 - L2 LINE L2 -188 3084 3037 417 357 56 5 chr3 72399591 72399787 -145637371 + L3 LINE CR1 1328 1533 -44 430 294 7 15 chr3 72399800 72399936 -145637222 - MER5A DNA MER1_type -15 174 40 2238 141 33 28 chr3 72399945 72400307 -145636851 - THE1B LTR MaLR 0 364 1 229 238 0 0 chr3 72400340 72400382 -145636776 + L3b LINE CR1 1531 1572 -11 2185 101 37 0 chr3 72400444 72400740 -145636418 - AluSx SINE Alu -5 307 1 1015 228 38 28 chr3 72400740 72400951 -145636207 - MER58A DNA MER1_type -11 213 1 509 250 69 0 chr3 72400959 72401103 -145636055 - MER103 DNA DNA -12 154 1 810 254 18 45 chr3 72401532 72401752 -145635406 + MER20 DNA MER1_type 6 219 0 218 323 50 10 chr3 72402108 72402207 -145634951 + MIR SINE MIR 61 163 -99 277 336 86 0 chr3 72403483 72403623 -145633535 + MIR SINE MIR 92 243 -19 181 306 32 32 chr3 72405384 72405446 -145631712 - L2 LINE L2 -328 2985 2924 201 39 0 0 chr3 72405705 72405731 -145631427 + (CA)n Simple_repeat Simple_repeat 2 27 0 * 243 0 0 0 chr3 72405730 72405757 -145631401 + (TC)n Simple_repeat Simple_repeat 1 27 0 420 278 52 23 chr3 72406823 72406996 -145630162 - L1MC5 LINE L1 -61 7900 7723 228 86 0 0 chr3 72407714 72407749 -145629409 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 2200 65 0 14 chr3 72407751 72408028 -145629130 - AluY SINE Alu -38 273 1 943 159 5 91 chr3 72408084 72408292 -145628866 - MER20 DNA MER1_type -1 218 29 377 286 5 92 chr3 72408624 72408830 -145628328 - MIR SINE MIR 0 262 75 700 341 114 33 chr3 72409396 72409850 -145627308 + L3 LINE CR1 57 547 -1030 328 359 130 5 chr3 72409849 72410033 -145627125 - MIR SINE MIR 0 262 56 * 308 316 129 7 chr3 72410066 72410205 -145626953 + L3 LINE CR1 562 717 -860 190 161 18 36 chr3 72410651 72410707 -145626451 + GA-rich Low_complexity Low_complexity 2 56 0 316 233 47 23 chr3 72411340 72411426 -145625732 + L1ME4a LINE L1 5996 6083 -38 526 335 59 5 chr3 72411436 72411639 -145625519 - MIR SINE MIR 0 262 49 436 240 42 0 chr3 72412557 72412653 -145624505 - L2 LINE L2 0 3313 3214 211 362 48 87 chr3 72412671 72412815 -145624343 + L2 LINE L2 2965 3100 -172 864 114 0 0 chr3 72412815 72412946 -145624212 + (TA)n Simple_repeat Simple_repeat 2 132 0 211 362 48 87 chr3 72412946 72413008 -145624150 + L2 LINE L2 3100 3163 -109 * 470 295 34 7 chr3 72412997 72413146 -145624012 + MIR SINE MIR 29 181 -81 1026 229 154 28 chr3 72413146 72413574 -145623584 + L1ME1 LINE L1 5641 6122 -44 338 264 51 46 chr3 72414143 72414340 -145622818 + MLT1J LTR MaLR 314 511 0 474 174 74 0 chr3 72414412 72414533 -145622625 + L1MA4 LINE L1 6165 6294 -6 562 275 64 0 chr3 72416142 72416313 -145620845 - MIR SINE MIR -11 251 70 372 268 83 32 chr3 72418001 72418158 -145619000 + LTR33 LTR ERVL 50 214 -307 234 204 0 20 chr3 72418458 72418507 -145618651 - L2 LINE L2 -16 3256 3209 2266 155 62 17 chr3 72418878 72419349 -145617809 - L1MB7 LINE L1 -14 6170 5679 434 322 7 7 chr3 72419425 72419577 -145617581 + MLT1K LTR MaLR 98 249 -339 207 167 0 0 chr3 72420268 72420304 -145616854 + (TGG)n Simple_repeat Simple_repeat 2 37 0 637 291 153 5 chr3 72420659 72420882 -145616276 - MIR SINE MIR 0 262 7 2423 84 3 0 chr3 72420982 72421293 -145615865 + AluSp SINE Alu 2 313 0 768 197 31 79 chr3 72421560 72421850 -145615308 - LTR37B LTR ERV1 0 468 193 286 247 55 60 chr3 72421887 72421970 -145615188 - LTR37B LTR ERV1 -270 198 116 1103 183 15 0 chr3 72421970 72422172 -145614986 + MER3 DNA MER1_type 5 209 0 286 247 55 60 chr3 72422172 72422270 -145614888 - LTR37B LTR ERV1 -352 116 18 1926 146 0 55 chr3 72422874 72423203 -145613955 + AluJo SINE Alu 1 311 -1 568 271 16 16 chr3 72424097 72424285 -145612873 - MIR SINE MIR -4 258 71 279 291 129 2 chr3 72424342 72424462 -145612696 + MIR SINE MIR 41 174 -61 346 179 0 0 chr3 72425062 72425129 -145612029 - LTR37B LTR ERV1 -396 72 6 2421 57 0 7 chr3 72425259 72425555 -145611603 - AluY SINE Alu -17 294 1 4556 66 17 0 chr3 72426529 72427122 -145610036 + L1PA5 LINE L1 5545 6147 -7 30 27 0 0 chr3 72427167 72427204 -145609954 + AT_rich Low_complexity Low_complexity 1 37 0 225 0 0 0 chr3 72427211 72427236 -145609922 + (A)n Simple_repeat Simple_repeat 1 25 0 288 272 9 44 chr3 72428861 72428975 -145608183 + CT-rich Low_complexity Low_complexity 6 115 0 215 211 0 13 chr3 72428991 72429067 -145608091 + CT-rich Low_complexity Low_complexity 4 78 0 218 366 0 0 chr3 72429981 72430063 -145607095 - MIR3 SINE MIR -3 205 124 1292 207 108 71 chr3 72431104 72431243 -145605915 + MLT1F1 LTR MaLR 2 135 -432 1603 138 64 115 chr3 72431243 72431694 -145605464 + MSTA LTR MaLR 1 428 0 1292 207 108 71 chr3 72431694 72432104 -145605054 + MLT1F1 LTR MaLR 135 567 0 2366 79 17 94 chr3 72432165 72432569 -145604589 + THE1C LTR MaLR 1 373 -2 1885 104 36 0 chr3 72432803 72433083 -145604075 - L1PB1 LINE L1 -5 6146 5857 681 162 0 0 chr3 72433083 72433188 -145603970 + AluSg/x SINE Alu 193 297 -13 633 131 4 91 chr3 72433191 72433416 -145603742 - L1MA6 LINE L1 -363 5788 5684 28 0 0 0 chr3 72433786 72433814 -145603344 + AT_rich Low_complexity Low_complexity 1 28 0 334 297 148 44 chr3 72434245 72434474 -145602684 + MIR SINE MIR 9 261 -1 853 191 71 48 chr3 72435528 72435738 -145601420 + MER20 DNA MER1_type 1 215 -4 546 164 329 0 chr3 72435756 72435908 -145601250 + MER3 DNA MER1_type 2 203 -6 2272 97 7 3 chr3 72436440 72436739 -145600419 - AluSc SINE Alu -9 300 1 600 300 108 37 chr3 72437169 72437466 -145599692 + L2 LINE L2 2996 3313 0 447 279 64 29 chr3 72438012 72438216 -145598942 + MIR SINE MIR 48 258 -4 1106 251 132 25 chr3 72438217 72438739 -145598419 + MLT1G LTR MaLR 1 578 -12 278 298 94 79 chr3 72438929 72439194 -145597964 + L2 LINE L2 2948 3216 -56 499 274 114 32 chr3 72439230 72439449 -145597709 + MIR SINE MIR 13 249 -13 189 139 0 0 chr3 72440912 72440955 -145596203 + (TA)n Simple_repeat Simple_repeat 2 44 0 251 260 117 0 chr3 72441032 72441109 -145596049 + L2 LINE L2 3228 3313 0 613 250 37 6 chr3 72441131 72441295 -145595863 + MER117 DNA MER1_type 22 190 -7 246 62 0 0 chr3 72443326 72443358 -145593800 + (T)n Simple_repeat Simple_repeat 1 32 0 265 196 18 0 chr3 72443372 72443428 -145593730 + MLT1J LTR MaLR 446 502 -9 848 188 47 6 chr3 72443611 72443781 -145593377 - MER5A DNA MER1_type -8 181 5 1126 211 48 3 chr3 72443796 72444085 -145593073 - MER5C DNA MER1_type -6 318 17 462 276 48 92 chr3 72444427 72444699 -145592459 - MIR SINE MIR 0 262 3 252 276 52 43 chr3 72444763 72444879 -145592279 + MIR SINE MIR 23 139 -69 309 212 59 0 chr3 72444934 72445019 -145592139 - MER103 DNA DNA 0 166 77 978 221 270 21 chr3 72445024 72445509 -145591649 + MER39 LTR ERV1 6 611 -96 329 194 69 3 chr3 72445534 72445652 -145591506 + MER39 LTR ERV1 434 673 -7 226 289 26 0 chr3 72445664 72445740 -145591418 - MER103 DNA DNA -86 80 3 425 202 79 35 chr3 72445968 72446082 -145591076 - MIR SINE MIR -36 226 108 25 65 0 0 chr3 72446861 72446907 -145590251 + AT_rich Low_complexity Low_complexity 1 46 0 1724 178 0 23 chr3 72447012 72447321 -145589837 + AluJb SINE Alu 1 302 -10 423 304 107 26 chr3 72448002 72448272 -145588886 + L2 LINE L2 2959 3250 -63 233 213 32 53 chr3 72449072 72449166 -145587992 - MER103 DNA DNA -70 96 5 686 241 112 0 chr3 72449166 72449336 -145587822 + MER5A DNA MER1_type 1 189 0 479 194 0 0 chr3 72449409 72449502 -145587656 - MER5A DNA MER1_type -88 101 9 430 240 101 45 chr3 72449794 72449973 -145587185 + MIR SINE MIR 74 262 0 1809 168 17 0 chr3 72450031 72450323 -145586835 + AluJb SINE Alu 1 297 -15 934 214 43 5 chr3 72451178 72451388 -145585770 + MER20 DNA MER1_type 2 219 0 535 264 42 14 chr3 72451862 72452006 -145585152 + MIR3 SINE MIR 55 202 -6 281 285 65 85 chr3 72453900 72454039 -145583119 + L2 LINE L2 3118 3253 -60 923 261 0 5 chr3 72454039 72454261 -145582897 + MER58A DNA MER1_type 4 224 0 281 285 65 85 chr3 72454261 72454321 -145582837 + L2 LINE L2 3253 3313 0 1243 173 0 0 chr3 72454450 72454658 -145582500 + MER46A DNA MER2_type 2 209 -27 468 290 45 45 chr3 72454649 72454873 -145582285 - LTR16A LTR ERVL -28 422 199 * 1055 166 142 0 chr3 72457062 72457267 -145579891 - MER46A DNA MER2_type -1 235 2 308 292 25 68 chr3 72457396 72457456 -145579702 - L2 LINE L2 0 3313 3252 934 262 0 4 chr3 72457456 72457681 -145579477 - MER58A DNA MER1_type 0 224 1 308 292 25 68 chr3 72457681 72457781 -145579377 - L2 LINE L2 -61 3252 3160 672 286 100 0 chr3 72458779 72459010 -145578148 - MIR SINE MIR -1 261 8 270 248 191 9 chr3 72459402 72459507 -145577651 - MIR SINE MIR -37 225 102 678 312 140 28 chr3 72459773 72460472 -145576686 + L2 LINE L2 2544 3306 -7 323 304 43 17 chr3 72460472 72460587 -145576571 - MER91C DNA MER1_type -1 139 22 219 188 0 0 chr3 72460588 72460636 -145576522 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 1543 262 47 10 chr3 72461721 72462130 -145575028 + LTR16A LTR ERVL 26 449 -1 887 205 0 0 chr3 72462722 72462873 -145574285 + MER58B DNA MER1_type 190 340 -1 297 279 116 7 chr3 72462957 72463104 -145574054 + L1ME4a LINE L1 5955 6117 -4 1362 196 7 45 chr3 72463141 72463432 -145573726 + AluJb SINE Alu 1 280 -32 32 57 0 0 chr3 72463893 72463946 -145573212 + AT_rich Low_complexity Low_complexity 1 53 0 721 219 0 0 chr3 72463946 72464069 -145573089 - FLAM_C SINE Alu -16 127 5 238 341 30 15 chr3 72464127 72464259 -145572899 - MIR SINE MIR -78 184 51 272 331 136 42 chr3 72465639 72466156 -145571002 - L2 LINE L2 0 3313 2676 296 307 0 13 chr3 72466978 72467053 -145570105 - L2 LINE L2 -2042 1272 1199 186 218 0 55 chr3 72467147 72467202 -145569956 - L2 LINE L2 -1 3312 3261 234 91 0 0 chr3 72467693 72467726 -145569432 + (GA)n Simple_repeat Simple_repeat 2 34 0 212 162 0 0 chr3 72467728 72467765 -145569393 + (TG)n Simple_repeat Simple_repeat 1 37 0 911 209 99 30 chr3 72468132 72468333 -145568825 + MER20 DNA MER1_type 3 217 -2 1621 148 68 4 chr3 72468410 72468673 -145568485 + AluJb SINE Alu 1 280 -32 490 288 11 63 chr3 72469511 72469665 -145567493 - MIR SINE MIR -80 182 38 1170 147 17 69 chr3 72469665 72469896 -145567262 - MER20 DNA MER1_type 0 219 1 490 288 11 63 chr3 72469896 72469932 -145567226 - MIR SINE MIR -224 38 2 23 0 0 0 chr3 72470969 72470992 -145566166 + AT_rich Low_complexity Low_complexity 1 23 0 1771 166 0 27 chr3 72470998 72471299 -145565859 + AluJo SINE Alu 1 293 -19 447 279 67 40 chr3 72471468 72471786 -145565372 - L2 LINE L2 -222 3050 2715 557 299 136 33 chr3 72472101 72472298 -145564860 - L2 LINE L2 -1 3312 3137 1698 138 4 34 chr3 72472298 72472566 -145564592 + AluJb SINE Alu 1 260 -52 557 299 136 33 chr3 72472566 72472810 -145564348 - L2 LINE L2 -176 3137 2763 272 224 205 29 chr3 72473367 72473488 -145563670 + MIR SINE MIR 17 157 -62 2249 112 0 10 chr3 72474149 72474461 -145562697 + AluSg SINE Alu 1 309 -1 389 306 28 14 chr3 72474589 72474733 -145562425 + MIR SINE MIR 9 154 -108 2056 135 0 3 chr3 72474823 72475120 -145562038 + AluSx SINE Alu 6 301 -11 193 211 0 0 chr3 72475131 72475169 -145561989 + MIR SINE MIR 211 248 -14 383 309 0 21 chr3 72475186 72475283 -145561875 + MIR3 SINE MIR 72 166 -42 1075 210 8 29 chr3 72475656 72475899 -145561259 + MIR SINE MIR 1 238 -24 248 253 40 0 chr3 72477673 72477748 -145559410 - MIR SINE MIR -10 252 175 399 239 198 36 chr3 72477804 72477971 -145559187 + L2 LINE L2 3120 3313 0 1656 200 82 14 chr3 72478859 72479284 -145557874 - Charlie4a DNA MER1_type -54 454 1 448 257 19 0 chr3 72479562 72479667 -145557491 - MER81 DNA DNA 0 114 8 587 266 34 6 chr3 72479687 72479864 -145557294 + MIR SINE MIR 78 259 -3 322 230 40 0 chr3 72480043 72480117 -145557041 - MER116 DNA Mariner 0 80 4 1644 167 10 35 chr3 72480513 72480825 -145556333 + AluJo SINE Alu 4 307 -5 858 152 54 179 chr3 72480850 72481154 -145556004 + MER33 DNA MER1_type 3 255 -2330 2208 163 42 12 chr3 72481154 72481583 -145555575 + L1MB4 LINE L1 5733 6174 -6 858 152 54 179 chr3 72481583 72481646 -145555512 + MER33 DNA MER1_type 255 324 0 425 234 99 82 chr3 72481700 72481871 -145555287 + MIR SINE MIR 12 185 -77 191 259 37 12 chr3 72482872 72482953 -145554205 - MIR SINE MIR -51 211 129 298 250 54 54 chr3 72484958 72485050 -145552108 - L2 LINE L2 -17 3255 3164 231 301 91 0 chr3 72485055 72485198 -145551960 + MER117 DNA MER1_type 14 169 -28 230 299 46 23 chr3 72485538 72485625 -145551533 + MIR3 SINE MIR 98 186 -22 1556 203 40 0 chr3 72486832 72487132 -145550026 + AluJo SINE Alu 1 312 0 264 122 0 0 chr3 72487134 72487175 -145549983 + (GGGA)n Simple_repeat Simple_repeat 3 43 0 180 0 0 0 chr3 72487276 72487296 -145549862 + (A)n Simple_repeat Simple_repeat 1 20 0 501 191 183 2 chr3 72487502 72487712 -145549446 - MLT1H LTR MaLR 0 549 298 214 384 161 0 chr3 72488400 72488512 -145548646 - L3b LINE CR1 -2 1581 1452 222 128 0 0 chr3 72488686 72488725 -145548433 + (GA)n Simple_repeat Simple_repeat 2 40 0 301 331 51 19 chr3 72489283 72489433 -145547725 - MIR SINE MIR -63 145 31 498 237 37 15 chr3 72489520 72489655 -145547503 + L1ME4a LINE L1 5729 5866 -255 1755 129 18 141 chr3 72489704 72490100 -145547058 - MER7A DNA MER2_type 0 346 2 330 115 0 0 chr3 72490121 72490173 -145546985 + (CA)n Simple_repeat Simple_repeat 2 53 0 21 57 0 0 chr3 72491508 72491543 -145545615 + AT_rich Low_complexity Low_complexity 1 35 0 223 293 66 19 chr3 72492439 72492545 -145544613 + MIR SINE MIR 4 114 -148 216 0 0 0 chr3 72492887 72492911 -145544247 + (TTA)n Simple_repeat Simple_repeat 2 25 0 293 258 145 32 chr3 72493397 72493521 -145543637 - MIR SINE MIR -55 153 16 1543 242 42 42 chr3 72493542 72494047 -145543111 + MLT1D LTR MaLR 1 505 0 1470 176 47 39 chr3 72494093 72494372 -145542786 + AluJo SINE Alu 2 282 -30 348 173 13 27 chr3 72495470 72495545 -145541613 - MER116 DNA Mariner -5 75 2 8797 28 0 0 chr3 72496124 72497866 -145539292 - L1PA3 LINE L1 0 6155 4414 3486 28 0 0 chr3 72497866 72498263 -145538895 + L1PA3 LINE L1 4002 4398 -1748 701 324 84 20 chr3 72498328 72498770 -145538388 - LTR33 LTR ERVL -5 516 47 662 345 35 0 chr3 72498907 72499136 -145538022 - MIR SINE MIR -3 259 23 245 362 111 30 chr3 72499303 72499502 -145537656 + L2 LINE L2 2878 3092 -180 945 273 46 102 chr3 72499584 72500083 -145537075 + MLT1K LTR MaLR 2 472 -116 187 407 0 0 chr3 72502031 72502117 -145535041 + L3 LINE CR1 631 716 -861 25 0 0 0 chr3 72502240 72502265 -145534893 + AT_rich Low_complexity Low_complexity 1 25 0 252 312 72 40 chr3 72502367 72502492 -145534666 + L3 LINE CR1 969 1097 -480 1007 231 52 41 chr3 72502645 72502935 -145534223 + L2 LINE L2 2312 2604 -710 739 290 179 27 chr3 72502936 72503447 -145533711 + L2 LINE L2 2715 3310 -3 2015 128 42 0 chr3 72503747 72504036 -145533122 + AluSx SINE Alu 1 301 -11 334 250 98 67 chr3 72504143 72504243 -145532915 - MIR SINE MIR -82 180 72 2994 110 2 19 chr3 72504243 72504672 -145532486 + L1PA14 LINE L1 5740 6161 0 334 250 98 67 chr3 72504672 72504735 -145532423 - MIR SINE MIR -190 72 12 3637 202 57 1 chr3 72504740 72505547 -145531611 - Charlie1a DNA MER1_type -4 1451 600 1891 144 6 28 chr3 72505678 72505997 -145531161 + AluJb SINE Alu 1 312 0 672 219 138 12 chr3 72506075 72506235 -145530923 - Charlie1a DNA MER1_type -1275 180 1 196 285 200 6 chr3 72506254 72506419 -145530739 + MIR SINE MIR 54 250 -12 196 358 0 0 chr3 72506450 72506517 -145530641 - MIR SINE MIR -126 82 16 572 253 104 22 chr3 72506651 72506833 -145530325 + MIR SINE MIR 48 244 -18 508 333 20 0 chr3 72507009 72507162 -145529996 + L2 LINE L2 3117 3272 0 281 306 250 0 chr3 72507243 72507387 -145529771 + MER5A DNA MER1_type 9 188 -1 382 275 103 39 chr3 72508679 72508912 -145528246 + MIR SINE MIR 8 255 -7 637 198 76 58 chr3 72509989 72510161 -145526997 + MER5B DNA MER1_type 1 175 -3 180 0 0 0 chr3 72510473 72510493 -145526665 + (ATG)n Simple_repeat Simple_repeat 3 22 0 318 288 81 9 chr3 72510499 72510610 -145526548 - MIR SINE MIR -97 165 47 233 337 39 90 chr3 72510775 72511054 -145526104 - L2 LINE L2 -111 3161 2897 732 211 53 6 chr3 72511068 72511239 -145525919 - MER5A DNA MER1_type 0 189 11 243 0 0 0 chr3 72512725 72512752 -145524406 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 2091 167 142 2 chr3 72512968 72513418 -145523740 - LTR64 LTR ERVK 0 513 1 494 301 68 36 chr3 72513842 72514091 -145523067 - MIR SINE MIR -1 261 5 261 391 18 18 chr3 72515068 72515288 -145521870 - MIR SINE MIR -32 230 11 228 135 0 0 chr3 72515383 72515420 -145521738 + (A)n Simple_repeat Simple_repeat 1 37 0 2095 145 3 3 chr3 72515828 72516138 -145521020 - AluJb SINE Alu 0 312 3 471 200 0 0 chr3 72516185 72516285 -145520873 + L1MC2 LINE L1 5803 5902 -442 336 233 116 0 chr3 72516285 72516371 -145520787 + L1MC4 LINE L1 6608 6703 -1339 319 296 23 0 chr3 72516295 72516383 -145520775 - L1MC4 LINE L1 -1339 6703 6614 * 1800 149 121 5 chr3 72516389 72516778 -145520380 + L1MC2 LINE L1 5902 6335 -9 184 273 104 0 chr3 72517383 72517460 -145519698 + L2 LINE L2 3187 3271 -1 389 305 107 6 chr3 72517795 72517972 -145519186 + MLT1K LTR MaLR 143 337 -251 234 340 30 0 chr3 72518618 72518718 -145518440 - MIR SINE MIR 0 262 160 318 259 209 25 chr3 72518880 72519038 -145518120 - MIR3 SINE MIR -17 191 5 1872 157 131 18 chr3 72520002 72520384 -145516774 - MSTA LTR MaLR 0 428 4 2087 133 0 14 chr3 72520729 72521075 -145516083 - L1MA4A LINE L1 -11 6292 5952 2208 128 0 0 chr3 72521108 72521412 -145515746 + AluSx SINE Alu 1 304 -8 1505 149 142 3 chr3 72521955 72522271 -145514887 + MER46B DNA MER2_type 1 235 -1 361 283 147 30 chr3 72522271 72522469 -145514689 - MIR SINE MIR -1 261 41 792 224 146 73 chr3 72522534 72522945 -145514213 - HsTC2 DNA Tc2 0 1900 1284 482 301 160 5 chr3 72523184 72523397 -145513761 - MIR SINE MIR -14 248 3 410 306 124 64 chr3 72524339 72524825 -145512333 + L2 LINE L2 2384 2908 -406 2309 69 16 10 chr3 72524825 72525129 -145512029 - AluY SINE Alu -5 306 1 410 306 124 64 chr3 72525129 72525191 -145511967 + L2 LINE L2 2908 2965 -349 1003 281 73 51 chr3 72525864 72526534 -145510624 - L1ME3A LINE L1 -224 5946 5262 317 244 98 30 chr3 72526720 72526884 -145510274 - MER113 DNA MER1_type? -345 176 2 243 61 0 0 chr3 72527061 72527094 -145510064 + (TG)n Simple_repeat Simple_repeat 1 33 0 26 30 0 0 chr3 72528349 72528382 -145508776 + AT_rich Low_complexity Low_complexity 1 33 0 1656 156 24 14 chr3 72528382 72528671 -145508487 + AluJb SINE Alu 1 292 -20 402 237 17 59 chr3 72528824 72528942 -145508216 - L2 LINE L2 0 3313 3201 369 235 166 0 chr3 72529051 72529238 -145507920 - L1ME2 LINE L1 -249 5915 5698 700 197 7 20 chr3 72529259 72529411 -145507747 - Tigger2 DNA MER2_type 0 2718 2569 1243 128 29 0 chr3 72529415 72529619 -145507539 - Tigger2 DNA MER2_type -2508 210 1 3008 214 52 24 chr3 72529619 72530978 -145506180 - L1ME LINE L1 -379 5785 4388 1599 148 3 44 chr3 72530985 72531303 -145505855 - L1MC3 LINE L1 -3 7782 7478 4205 192 38 15 chr3 72531346 72532577 -145504581 + L1MB5 LINE L1 4909 6174 0 423 235 20 10 chr3 72532593 72532691 -145504467 + L2 LINE L2 3212 3310 -3 1709 187 24 37 chr3 72533074 72533449 -145503709 - MLT1A2 LTR MaLR 0 374 5 28360 118 14 66 chr3 72533652 72534789 -145502369 - L1PA7 LINE L1 -1 6153 4958 2427 63 0 3 chr3 72534789 72535088 -145502070 - AluY SINE Alu -13 298 1 28360 118 14 66 chr3 72535088 72540443 -145496715 - L1PA7 LINE L1 -1196 4958 12 365 278 52 0 chr3 72540500 72540597 -145496561 - MIR SINE MIR -114 148 47 329 43 21 0 chr3 72541044 72541091 -145496067 + (TC)n Simple_repeat Simple_repeat 1 48 0 2449 57 40 0 chr3 72541693 72541992 -145495166 + AluY SINE Alu 1 311 0 316 318 76 8 chr3 72542193 72542325 -145494833 + MIR SINE MIR 110 250 -12 318 264 110 0 chr3 72542340 72542431 -145494727 + MER91C DNA MER1_type 1 101 -39 804 243 11 11 chr3 72542488 72542665 -145494493 + MER8 DNA MER2_type 1 177 -62 396 151 0 27 chr3 72542700 72542773 -145494385 - Tigger2 DNA MER2_type -2647 71 1 1358 167 115 13 chr3 72542794 72543099 -145494059 + MER44D DNA MER2_type 4 609 0 219 127 84 14 chr3 72543108 72543179 -145493979 + (TATAA)n Simple_repeat Simple_repeat 4 79 0 225 330 87 26 chr3 72544003 72544118 -145493040 - L2 LINE L2 0 3272 3151 273 302 81 24 chr3 72545027 72545101 -145492057 - MIR SINE MIR 0 262 194 2085 156 0 0 chr3 72545101 72545403 -145491755 + AluSx SINE Alu 1 302 -10 273 302 81 24 chr3 72545403 72545540 -145491618 - MIR SINE MIR -68 194 36 1706 172 3 38 chr3 72545572 72545886 -145491272 + AluJo SINE Alu 4 306 -6 288 0 0 0 chr3 72546226 72546258 -145490900 + (CA)n Simple_repeat Simple_repeat 2 33 0 277 261 46 69 chr3 72546302 72546432 -145490726 + MIR SINE MIR 89 215 -47 497 282 88 28 chr3 72546723 72546904 -145490254 + MIR SINE MIR 20 211 -51 657 236 65 37 chr3 72547561 72547777 -145489381 - MER58 DNA MER1_type -2195 225 4 294 280 33 67 chr3 72548967 72549117 -145488041 - MIR SINE MIR -45 217 73 405 282 129 29 chr3 72549301 72549471 -145487687 - MIR3 SINE MIR -6 202 16 274 242 0 0 chr3 72549559 72549621 -145487537 - MER117 DNA MER1_type -135 62 1 546 290 148 0 chr3 72549660 72549836 -145487322 - MIR SINE MIR -14 248 47 264 226 0 0 chr3 72549848 72549910 -145487248 + (CATATA)n Simple_repeat Simple_repeat 6 67 0 270 333 39 25 chr3 72552244 72552448 -145484710 - MIR SINE MIR -36 226 20 1753 190 25 19 chr3 72552588 72552951 -145484207 - MLT1A1 LTR MaLR 0 365 1 2063 162 60 36 chr3 72553280 72553694 -145483464 + MSTA LTR MaLR 5 428 0 265 358 34 34 chr3 72555049 72555228 -145481930 + L2 LINE L2 2882 3060 -212 626 253 174 0 chr3 72555269 72555459 -145481699 - MER58A DNA MER1_type 0 224 2 551 309 14 53 chr3 72556307 72556592 -145480566 + MLT1K LTR MaLR 11 284 -304 664 265 20 15 chr3 72556644 72556844 -145480314 + MLT1K LTR MaLR 386 586 -2 800 196 0 0 chr3 72557083 72557216 -145479942 + FLAM_A SINE Alu 1 133 0 519 273 56 25 chr3 72557265 72557426 -145479732 - MIR3 SINE MIR -6 202 37 314 301 23 45 chr3 72557517 72557650 -145479508 + MIR SINE MIR 82 211 -51 434 267 199 27 chr3 72557676 72557968 -145479190 - L2 LINE L2 -3 3310 2969 257 243 159 9 chr3 72558150 72558257 -145478901 + L1MC/D LINE L1 5540 5662 -459 235 305 15 30 chr3 72558326 72558457 -145478701 + L1MC/D LINE L1 5659 5787 -2021 292 281 42 20 chr3 72558762 72558942 -145478216 - L1ME LINE L1 -343 5778 5593 444 321 30 25 chr3 72559425 72559786 -145477372 - L1MC4a LINE L1 -1874 5934 5572 947 195 72 0 chr3 72560902 72561097 -145476061 - MER3 DNA MER1_type 0 209 1 253 299 165 0 chr3 72561258 72561355 -145475803 + L2 LINE L2 3154 3266 -6 353 306 161 32 chr3 72561899 72562120 -145475038 + MIR SINE MIR 9 256 -6 1872 223 57 40 chr3 72562316 72562926 -145474232 + MLT1E2 LTR MaLR 1 626 0 1826 155 13 28 chr3 72563052 72563369 -145473789 + AluJo SINE Alu 1 312 0 7166 84 27 3 chr3 72563422 72564000 -145473158 + L1PA13 LINE L1 4308 4871 -1292 2269 95 10 0 chr3 72564000 72564296 -145472862 + AluY SINE Alu 1 299 -12 7166 84 27 3 chr3 72564296 72565465 -145471693 + L1PA13 LINE L1 4871 6160 -3 22 0 0 0 chr3 72565537 72565559 -145471599 + AT_rich Low_complexity Low_complexity 1 22 0 826 134 4 207 chr3 72565624 72565870 -145471288 + MLT1C LTR MaLR 193 465 -2 1678 152 29 89 chr3 72565878 72566260 -145470898 - MLT1B LTR MaLR 0 390 32 345 165 76 25 chr3 72566369 72566448 -145470710 + MIR SINE MIR 61 143 -65 294 342 34 8 chr3 72566554 72566671 -145470487 - L2 LINE L2 -3 3269 3150 854 178 0 0 chr3 72566674 72566809 -145470349 + AluJo SINE Alu 5 139 -173 201 152 0 0 chr3 72566828 72566861 -145470297 + A-rich Low_complexity Low_complexity 3 35 0 2723 148 38 82 chr3 72567032 72567581 -145469577 - LTR45 LTR ERV1 0 525 1 21 0 0 0 chr3 72567805 72567826 -145469332 + AT_rich Low_complexity Low_complexity 1 21 0 406 265 158 10 chr3 72569325 72569521 -145467637 + MIR SINE MIR 1 225 -37 2507 115 25 3 chr3 72569707 72570063 -145467095 + THE1B LTR MaLR 1 364 0 2195 142 27 32 chr3 72570121 72570555 -145466603 - LTR23 LTR ERV1 0 467 1 692 250 58 0 chr3 72570655 72570811 -145466347 + MER5A DNA MER1_type 1 165 -24 209 289 180 52 chr3 72571822 72572016 -145465142 - L2 LINE L2 -249 3064 2846 207 304 120 43 chr3 72572083 72572175 -145464983 - L2 LINE L2 -477 2837 2739 301 226 73 131 chr3 72572847 72572984 -145464174 + L2 LINE L2 3141 3269 -3 306 338 75 21 chr3 72573095 72573335 -145463823 - MIR SINE MIR -2 260 8 24 0 0 0 chr3 72573370 72573394 -145463764 + AT_rich Low_complexity Low_complexity 1 24 0 341 291 117 0 chr3 72573835 72573938 -145463220 + MLT1J LTR MaLR 3 117 -394 2358 61 0 58 chr3 72574014 72574341 -145462817 - AluY SINE Alu -3 308 1 1045 76 8 0 chr3 72574352 72574483 -145462675 - AluY SINE Alu -179 132 1 830 242 55 48 chr3 72574542 72574815 -145462343 + MLT1J LTR MaLR 237 511 0 1641 200 0 16 chr3 72575179 72575484 -145461674 + AluJo SINE Alu 1 300 -12 189 229 260 21 chr3 72575648 72575744 -145461414 + MER5A DNA MER1_type 48 166 -23 * 345 255 10 41 chr3 72575675 72575773 -145461385 - MER5A DNA MER1_type -85 104 10 663 274 42 31 chr3 72575784 72576043 -145461115 + L2 LINE L2 2677 2938 -376 247 314 205 13 chr3 72576038 72576194 -145460964 + L2 LINE L2 3106 3291 -22 * 203 161 0 0 chr3 72576315 72576346 -145460812 + (CA)n Simple_repeat Simple_repeat 2 32 0 254 347 11 63 chr3 72577522 72577712 -145459446 - MIR SINE MIR -66 196 17 533 303 113 0 chr3 72578158 72578353 -145458805 + MIR SINE MIR 46 262 0 934 246 34 0 chr3 72578414 72578650 -145458508 - MIR SINE MIR -12 250 7 387 344 21 101 chr3 72578999 72579386 -145457772 + L2 LINE L2 2910 3265 -7 420 309 82 45 chr3 72580255 72580498 -145456660 - MIR SINE MIR -3 259 8 342 0 0 0 chr3 72580639 72580677 -145456481 + (TA)n Simple_repeat Simple_repeat 1 38 0 * 405 0 0 0 chr3 72580676 72580721 -145456437 + (GA)n Simple_repeat Simple_repeat 2 46 0 765 122 0 0 chr3 72580726 72580824 -145456334 - AluJb SINE Alu -207 105 8 410 299 10 103 chr3 72581152 72581346 -145455812 + MLT1L LTR MaLR 231 484 -105 424 253 28 70 chr3 72581405 72581556 -145455602 + L1ME1 LINE L1 5680 5824 -297 2049 139 0 7 chr3 72581556 72581859 -145455299 + AluSx SINE Alu 1 301 -11 424 253 28 70 chr3 72581859 72581948 -145455210 + L1ME1 LINE L1 5824 5915 -206 1814 168 66 47 chr3 72582454 72582709 -145454449 + MLT1B LTR MaLR 1 267 -123 2373 74 3 0 chr3 72582709 72583018 -145454140 + AluY SINE Alu 1 310 -1 1814 168 66 47 chr3 72583018 72583142 -145454016 + MLT1B LTR MaLR 267 387 -3 1203 251 37 58 chr3 72583430 72583630 -145453528 + MER20B DNA MER1_type 304 507 -276 1171 186 93 0 chr3 72583630 72583834 -145453324 + MER58A DNA MER1_type 2 224 0 1203 251 37 58 chr3 72583834 72584063 -145453095 + MER20B DNA MER1_type 507 724 -59 324 276 143 0 chr3 72584204 72584309 -145452849 + L2 LINE L2 3194 3313 0 188 333 30 44 chr3 72584357 72584492 -145452666 + L3 LINE CR1 1425 1557 -20 4396 60 6 0 chr3 72584503 72585024 -145452134 - L1PA7 LINE L1 0 6154 5631 1406 245 108 36 chr3 72585278 72585532 -145451626 + MLT1H LTR MaLR 4 238 -311 1032 235 52 0 chr3 72585532 72585745 -145451413 + MER58A DNA MER1_type 1 224 0 1406 245 108 36 chr3 72585745 72585988 -145451170 + MLT1H LTR MaLR 238 537 -12 1077 264 102 39 chr3 72586077 72586490 -145450668 + LTR16C LTR ERVL 53 491 0 487 259 0 23 chr3 72586490 72586621 -145450537 + MIR SINE MIR 81 208 -54 2324 148 8 0 chr3 72586652 72587010 -145450148 + MER46B DNA MER2_type 1 236 0 358 287 8 31 chr3 72587021 72587150 -145450008 - MIR SINE MIR -34 228 103 1982 150 64 0 chr3 72587229 72587556 -145449602 + MER7A DNA MER2_type 1 346 0 181 222 89 0 chr3 72588750 72588795 -145448363 + MIR SINE MIR 89 137 -71 492 343 44 6 chr3 72589051 72589232 -145447926 + MIR SINE MIR 6 193 -69 23 0 0 0 chr3 72589297 72589320 -145447838 + AT_rich Low_complexity Low_complexity 1 23 0 456 250 101 14 chr3 72589821 72589969 -145447189 - MIR SINE MIR -54 208 48 241 328 30 38 chr3 72591057 72591188 -145445970 - L2 LINE L2 -508 2806 2677 2020 170 56 6 chr3 72591862 72592220 -145444938 - MLT2B1 LTR ERVL -144 376 1 1327 293 64 13 chr3 72592556 72593053 -145444105 + L2 LINE L2 2791 3312 -1 2858 133 4 13 chr3 72593213 72593664 -145443494 - L1MB3 LINE L1 -2 6181 5735 697 300 161 5 chr3 72594066 72594506 -145442652 - L2 LINE L2 -965 2349 1841 253 397 11 17 chr3 72595122 72595296 -145441862 + MIR SINE MIR 18 190 -72 27 49 0 0 chr3 72595597 72595638 -145441520 + AT_rich Low_complexity Low_complexity 1 41 0 207 271 0 0 chr3 72596257 72596305 -145440853 + (ATG)n Simple_repeat Simple_repeat 1 48 0 502 227 36 21 chr3 72596346 72596498 -145440660 - MIR SINE MIR -50 158 54 297 215 125 69 chr3 72597340 72597484 -145439674 - MIR SINE MIR -20 242 91 319 217 12 24 chr3 72597486 72597569 -145439589 + L1MC5 LINE L1 7831 7912 -49 217 314 49 29 chr3 72597603 72597705 -145439453 - MIR SINE MIR -158 104 1 28 29 0 0 chr3 72598837 72598872 -145438286 + AT_rich Low_complexity Low_complexity 1 35 0 456 222 124 0 chr3 72599131 72599284 -145437874 - MER20B DNA MER1_type -113 670 499 1052 288 81 35 chr3 72599379 72599872 -145437286 - MER20B DNA MER1_type -267 516 1 405 0 0 0 chr3 72600975 72601020 -145436138 + (TG)n Simple_repeat Simple_repeat 2 46 0 194 349 45 0 chr3 72601101 72601167 -145435991 + L2 LINE L2 3139 3207 -65 362 140 0 0 chr3 72651168 72651225 -145385933 + L1PB1 LINE L1 6093 6149 -2 280 64 43 0 chr3 72651360 72651407 -145385751 + (CA)n Simple_repeat Simple_repeat 1 49 0 336 247 234 25 chr3 72651920 72652078 -145385080 + MIR SINE MIR 1 191 -71 * 390 337 122 0 chr3 72652076 72652248 -145384910 - MIR SINE MIR 0 262 70 301 340 22 38 chr3 72654416 72654601 -145382557 + L2 LINE L2 2827 3008 -264 1775 159 0 0 chr3 72655056 72655326 -145381832 + AluSx SINE Alu 13 282 -30 5105 80 10 1 chr3 72655426 72656125 -145381033 - L1P LINE L1 -1887 4259 3555 2814 198 49 5 chr3 72656104 72656695 -145380463 - L1P LINE L1 -5503 643 27 * 581 318 60 4 chr3 72656922 72657155 -145380003 - MIR SINE MIR 0 262 17 295 277 192 25 chr3 72657375 72657552 -145379606 - MIR SINE MIR -46 216 16 272 298 119 66 chr3 72657918 72658220 -145378938 + L2 LINE L2 2579 2896 -418 * 288 267 12 35 chr3 72658210 72658296 -145378862 - L3 LINE CR1 -54 1523 1440 383 230 235 9 chr3 72658378 72658563 -145378595 + MIR SINE MIR 30 261 -1 2312 112 0 3 chr3 72659018 72659330 -145377828 + AluY SINE Alu 1 311 0 612 262 103 99 chr3 72660151 72660625 -145376533 - MLT1K LTR MaLR 0 476 1 278 299 97 19 chr3 72661469 72661623 -145375535 - MER103 DNA DNA 0 166 1 212 315 43 22 chr3 72662525 72662617 -145374541 + L2 LINE L2 3220 3313 0 22 35 0 0 chr3 72662675 72662704 -145374454 + AT_rich Low_complexity Low_complexity 1 29 0 2047 154 46 35 chr3 72662735 72663106 -145374052 - THE1C LTR MaLR 0 375 1 746 190 5 97 chr3 72663144 72663360 -145373798 + MER20 DNA MER1_type 24 219 0 1659 245 110 41 chr3 72664162 72664717 -145372441 + MLT1E LTR MaLR 1 593 0 470 227 123 19 chr3 72665432 72665586 -145371572 - LTR16A LTR ERVL 0 450 281 1595 207 49 28 chr3 72665607 72666033 -145371125 + L1ME3 LINE L1 5717 6151 -11 286 42 42 0 chr3 72666150 72666198 -145370960 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 1614 210 0 0 chr3 72666201 72666492 -145370666 - AluJo SINE Alu -21 291 1 292 294 82 22 chr3 72666761 72666992 -145370166 - L1M4 LINE L1 -1890 4256 4012 7007 57 7 0 chr3 72667018 72668176 -145368982 + L1PA5 LINE L1 4985 6150 -4 287 222 0 111 chr3 72669431 72669488 -145367670 - MIR SINE MIR -14 248 203 2331 96 0 10 chr3 72669488 72669801 -145367357 - AluSq SINE Alu -3 310 1 287 222 0 111 chr3 72669801 72669833 -145367325 - MIR SINE MIR -59 203 169 1691 201 27 12 chr3 72669877 72670284 -145366874 - L1MC3 LINE L1 0 7785 7373 800 303 98 23 chr3 72670536 72670922 -145366236 - LTR16A LTR ERVL -13 437 23 483 302 121 42 chr3 72671225 72671629 -145365529 - L1M4 LINE L1 -2751 3395 2960 300 217 30 40 chr3 72671632 72671763 -145365395 + MLT1J LTR MaLR 26 113 -333 344 296 14 35 chr3 72671933 72672075 -145365083 - MLT1J LTR MaLR -372 139 1 395 339 27 11 chr3 72672126 72672312 -145364846 + MLT1J LTR MaLR 164 352 -159 292 304 29 0 chr3 72672803 72672905 -145364253 + MIR SINE MIR 158 262 0 569 282 178 64 chr3 72674113 72674563 -145362595 - MLT1K LTR MaLR -71 517 17 397 280 8 8 chr3 72674704 72674829 -145362329 + MLT1J LTR MaLR 25 149 -362 1431 209 150 37 chr3 72674831 72674855 -145362303 + MLT1D LTR MaLR 1 21 -484 2680 94 8 26 chr3 72674855 72675237 -145361921 - THE1C LTR MaLR 0 375 1 1431 209 150 37 chr3 72675237 72675666 -145361492 + MLT1D LTR MaLR 21 505 0 393 276 79 25 chr3 72675676 72675955 -145361203 + MLT1J LTR MaLR 151 476 -35 953 316 38 7 chr3 72675999 72676426 -145360732 + LTR16B LTR ERVL 8 447 -17 423 0 0 0 chr3 72677052 72677099 -145360059 + (TA)n Simple_repeat Simple_repeat 1 47 0 769 72 0 0 chr3 72677100 72677197 -145359961 - L1PA7 LINE L1 -19 6135 6039 23 78 0 0 chr3 72677326 72677377 -145359781 + AT_rich Low_complexity Low_complexity 1 51 0 622 237 52 29 chr3 72678355 72678528 -145358630 + MIR SINE MIR 71 247 -15 394 256 63 118 chr3 72679165 72679247 -145357911 + MIR SINE MIR 28 113 -149 2282 102 0 0 chr3 72679247 72679542 -145357616 - AluSc SINE Alu -14 295 1 394 256 63 118 chr3 72679542 72679697 -145357461 + MIR SINE MIR 113 252 -10 28 48 0 0 chr3 72679710 72679752 -145357406 + AT_rich Low_complexity Low_complexity 1 42 0 577 242 94 29 chr3 72679959 72680236 -145356922 - L1ME4a LINE L1 -238 5883 5589 2059 140 0 0 chr3 72680379 72680665 -145356493 + AluSc SINE Alu 1 286 -23 339 294 236 49 chr3 72681111 72681539 -145355619 + L2 LINE L2 2806 3313 0 208 206 0 27 chr3 72681807 72681880 -145355278 + GA-rich Low_complexity Low_complexity 1 71 0 3584 179 44 20 chr3 72682333 72683125 -145354033 - L1MB8 LINE L1 -1 6177 5367 283 315 41 14 chr3 72683135 72683281 -145353877 + L2 LINE L2 2664 2813 -501 333 292 16 53 chr3 72684647 72684790 -145352368 - MIR SINE MIR -65 143 21 288 91 0 0 chr3 72684824 72684868 -145352290 + (CA)n Simple_repeat Simple_repeat 1 44 0 25 31 0 0 chr3 72685378 72685410 -145351748 + AT_rich Low_complexity Low_complexity 1 32 0 439 348 55 62 chr3 72686031 72686433 -145350725 + L2 LINE L2 2862 3260 -12 659 322 68 60 chr3 72686617 72687466 -145349692 + L2 LINE L2 2422 3262 -10 273 98 0 0 chr3 72687467 72687508 -145349650 + (TGGA)n Simple_repeat Simple_repeat 2 42 0 2147 129 3 3 chr3 72688964 72689274 -145347884 + AluSx SINE Alu 1 310 -2 21 82 0 0 chr3 72689487 72689536 -145347622 + AT_rich Low_complexity Low_complexity 1 49 0 657 0 0 0 chr3 72690219 72690292 -145346866 + (TA)n Simple_repeat Simple_repeat 1 73 0 449 190 135 43 chr3 72692844 72693007 -145344151 + MER5B DNA MER1_type 1 178 0 311 219 55 0 chr3 72695290 72695363 -145341795 + MIR SINE MIR 40 116 -146 838 196 0 24 chr3 72695527 72695695 -145341463 + FRAM SINE Alu 1 159 -17 2279 100 0 3 chr3 72695733 72696032 -145341126 - AluSg SINE Alu -12 298 1 313 278 150 23 chr3 72696886 72697059 -145340099 - MIR3 SINE MIR -11 197 3 482 196 39 10 chr3 72697223 72697325 -145339833 - MIR SINE MIR -120 142 38 258 32 0 0 chr3 72697892 72697923 -145339235 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 348 302 55 30 chr3 72698044 72698246 -145338912 + MLT1K LTR MaLR 375 581 -7 387 308 170 6 chr3 72698745 72698927 -145338231 - MLT1K LTR MaLR -367 221 10 329 227 85 64 chr3 72700583 72700724 -145336434 + L1MC/D LINE L1 5676 5819 -1989 297 342 26 8 chr3 72701013 72701130 -145336028 - MIR3 SINE MIR -54 154 36 429 301 74 12 chr3 72702004 72702167 -145334991 - MIR SINE MIR -12 250 78 351 0 0 0 chr3 72703899 72703938 -145333220 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 267 109 0 125 chr3 72703960 72704024 -145333134 + L1MB7 LINE L1 23 78 -6464 2295 214 19 41 chr3 72704039 72704628 -145332530 + L1MB7 LINE L1 53 628 -5914 4524 196 44 8 chr3 72704633 72706514 -145330644 + L1MB7 LINE L1 4723 6675 -7 2155 123 0 0 chr3 72706613 72706941 -145330217 - AluSx SINE Alu 0 312 1 1389 111 0 0 chr3 72707750 72707931 -145329227 - AluSc SINE Alu -9 300 120 2419 209 64 10 chr3 72708911 72709424 -145327734 + MLT1F LTR MaLR 1 541 -1 515 310 90 35 chr3 72709424 72709769 -145327389 - LTR16C LTR ERVL -55 436 73 217 320 206 57 chr3 72710024 72710271 -145326887 + L2 LINE L2 2978 3261 -11 2365 94 25 0 chr3 72710275 72710636 -145326522 + L1MA5A LINE L1 5921 6290 -7 2205 46 0 11 chr3 72711943 72712205 -145324953 - AluY SINE Alu -15 296 38 617 303 29 63 chr3 72712553 72712936 -145324222 + MLT1K LTR MaLR 57 426 -162 226 247 90 45 chr3 72713237 72713326 -145323832 + MIR3 SINE MIR 15 107 -101 21 0 0 0 chr3 72713904 72713925 -145323233 + AT_rich Low_complexity Low_complexity 1 21 0 181 356 58 0 chr3 72714191 72714278 -145322880 + L2 LINE L2 2969 3060 -212 304 293 42 50 chr3 72714679 72714897 -145322261 - MIR SINE MIR -13 249 40 1292 186 17 0 chr3 72714933 72715164 -145321994 - MLT1A1 LTR MaLR -12 353 119 389 113 0 0 chr3 72716146 72716208 -145320950 - MLT2B1 LTR ERVL 0 520 459 330 238 24 24 chr3 72716209 72716293 -145320865 - L1MC4 LINE L1 -1344 6698 6615 462 210 0 0 chr3 72716323 72716447 -145320711 + (TAGG)n Simple_repeat Simple_repeat 1 124 0 1751 184 25 25 chr3 72716460 72716824 -145320334 - MLT2B3 LTR ERVL -40 514 151 531 296 46 31 chr3 72717524 72717784 -145319374 - Charlie8 DNA MER1_type -2153 264 1 630 258 142 40 chr3 72718076 72718301 -145318857 + MIR SINE MIR 12 259 -3 631 169 193 0 chr3 72720669 72720835 -145316323 + MER3 DNA MER1_type 5 202 -7 450 274 56 24 chr3 72720950 72721142 -145316016 - MIR SINE MIR -10 252 50 1172 177 28 16 chr3 72721168 72721417 -145315741 - MLT1A1 LTR MaLR 0 365 114 254 245 0 0 chr3 72721624 72721673 -145315485 + MIR SINE MIR 104 152 -110 1215 81 0 12 chr3 72722969 72723142 -145314016 - L1P4 LINE L1 -442 5726 5556 1758 96 4 4 chr3 72723142 72723388 -145313770 + L1PA10 LINE L1 5919 6167 -1 726 270 51 51 chr3 72723551 72723844 -145313314 - MLT1J LTR MaLR -29 482 190 2167 100 0 0 chr3 72723848 72724128 -145313030 + AluSg SINE Alu 1 280 -30 412 320 31 0 chr3 72724171 72724299 -145312859 + L2 LINE L2 3182 3313 0 1189 199 81 15 chr3 72724413 72724684 -145312474 - MSTD LTR MaLR 0 396 108 256 228 76 0 chr3 72724801 72724880 -145312278 - MLT1I LTR MaLR -1 408 324 267 290 0 10 chr3 72725061 72725161 -145311997 - MLT1I LTR MaLR -235 174 76 370 271 16 25 chr3 72727387 72727509 -145309649 - MIR SINE MIR -73 189 69 344 297 136 8 chr3 72727874 72727992 -145309166 + MIR SINE MIR 2 134 -128 727 221 67 157 chr3 72727995 72728062 -145309096 - MLT1H LTR MaLR -4 545 474 2150 109 0 33 chr3 72728062 72728364 -145308794 + AluY SINE Alu 1 292 -19 727 221 67 157 chr3 72728364 72728890 -145308268 - MLT1H LTR MaLR -75 474 5 1715 185 10 25 chr3 72730127 72730441 -145306717 - AluJo SINE Alu -3 309 1 627 283 36 46 chr3 72730454 72730898 -145306260 - MLT1J LTR MaLR -11 500 9 190 268 0 0 chr3 72730945 72730986 -145306172 + L2 LINE L2 3224 3264 -8 469 272 23 176 chr3 72731127 72731825 -145305333 - L2 LINE L2 0 3272 2686 231 279 105 0 chr3 72731804 72731890 -145305268 - L2 LINE L2 -5 3308 3214 * 590 211 56 7 chr3 72731908 72732050 -145305108 + MLT1J LTR MaLR 30 178 -333 526 241 80 12 chr3 72732165 72732327 -145304831 + MLT1J LTR MaLR 339 511 0 2295 123 0 0 chr3 72732618 72732926 -145304232 - AluSx SINE Alu -2 310 3 376 324 22 38 chr3 72733371 72733556 -145303602 - L2 LINE L2 -264 3008 2827 1854 157 3 7 chr3 72734002 72734296 -145302862 - AluJb SINE Alu -15 297 5 802 246 24 44 chr3 72734665 72734913 -145302245 + MIR SINE MIR 6 248 -14 534 16 0 0 chr3 72735399 72735462 -145301696 + (TG)n Simple_repeat Simple_repeat 2 64 0 2146 133 0 0 chr3 72735464 72735766 -145301392 - AluSg SINE Alu -8 302 1 328 262 115 77 chr3 72735830 72736143 -145301015 + MLT1L LTR MaLR 111 435 -180 335 319 37 11 chr3 72736487 72736642 -145300516 + MIR SINE MIR 1 154 -64 1654 214 3 0 chr3 72737385 72737684 -145299474 + AluJo SINE Alu 1 300 -12 504 246 82 0 chr3 72737938 72738145 -145299013 + MER20B DNA MER1_type 513 736 -47 17893 40 1 0 chr3 72739342 72742317 -145294841 - L1PA4 LINE L1 0 6155 3179 1324 45 0 17 chr3 72742317 72742486 -145294672 + L1P LINE L1 2694 2861 -3285 606 71 0 0 chr3 72742495 72742594 -145294564 - L1PA4 LINE L1 -2962 3184 3086 2068 84 0 3 chr3 72742695 72743006 -145294152 - L1P LINE L1 -844 5302 4993 3952 196 37 37 chr3 72743058 72744411 -145292747 + L1MB7 LINE L1 4803 6164 -20 23 0 0 0 chr3 72744638 72744661 -145292497 + AT_rich Low_complexity Low_complexity 1 23 0 1316 251 42 39 chr3 72745495 72745977 -145291181 + MER74B LTR ERVL 66 548 -74 239 179 119 0 chr3 72745922 72745989 -145291169 - MER88 LTR ERVL -311 153 79 * 589 291 127 15 chr3 72746150 72746490 -145290668 + LTR33 LTR ERVL 25 402 -119 2188 184 82 11 chr3 72747308 72747770 -145289388 + MLT1A1-int LTR MaLR 1241 1735 0 1445 199 28 19 chr3 72747770 72748132 -145289026 + MLT1A1 LTR MaLR 1 365 0 378 0 0 0 chr3 72749519 72749561 -145287597 + (TG)n Simple_repeat Simple_repeat 2 43 0 481 255 51 38 chr3 72750858 72751015 -145286143 - MIR SINE MIR -88 174 16 358 323 39 8 chr3 72751118 72751245 -145285913 - L2 LINE L2 -1 3271 3141 759 211 0 138 chr3 72751296 72751514 -145285644 - MER5A DNA MER1_type -1 188 1 3463 148 63 0 chr3 72751767 72752388 -145284770 - L1MC1 LINE L1 -2 6331 5672 22 35 0 0 chr3 72752466 72752495 -145284663 + AT_rich Low_complexity Low_complexity 1 29 0 1058 169 62 4 chr3 72752509 72752751 -145284407 - L1MA8 LINE L1 -3 6288 6033 242 179 143 0 chr3 72752762 72752818 -145284340 + MIR SINE MIR 184 247 -15 231 239 0 0 chr3 72755021 72755067 -145282091 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 613 266 49 35 chr3 72755674 72755877 -145281281 + L2 LINE L2 3108 3313 0 483 338 44 4 chr3 72755929 72756157 -145281001 + MIR SINE MIR 26 262 0 215 257 0 57 chr3 72756937 72757007 -145280151 - MIR SINE MIR -70 192 127 192 283 0 0 chr3 72757584 72757630 -145279528 + L2 LINE L2 3268 3313 0 5362 73 7 1 chr3 72758989 72759673 -145277485 + LTR12 LTR ERV1 1 688 0 825 261 5 20 chr3 72759787 72759982 -145277176 - MIR SINE MIR -51 211 20 22 35 0 0 chr3 72760317 72760346 -145276812 + AT_rich Low_complexity Low_complexity 1 29 0 203 179 26 0 chr3 72760775 72760814 -145276344 + MIR SINE MIR 72 111 -97 438 209 70 39 chr3 72762082 72762211 -145274947 + MER94 DNA DNA 2 134 0 396 299 19 0 chr3 72762266 72762373 -145274785 + MIR SINE MIR 20 128 -134 274 187 53 53 chr3 72762378 72762453 -145274705 - MIR SINE MIR -114 148 74 260 217 121 0 chr3 72763817 72763900 -145273258 - L1MCa LINE L1 -4198 2743 2651 447 156 0 0 chr3 72764040 72764117 -145273041 + L1ME3 LINE L1 6026 6102 -60 759 308 96 6 chr3 72765129 72765463 -145271695 + L2 LINE L2 2445 2808 -506 552 185 92 0 chr3 72765471 72765590 -145271568 - Charlie1 DNA MER1_type -7 2754 2625 228 274 0 0 chr3 72765655 72765728 -145271430 + L1MC4 LINE L1 6648 6720 -1322 * 1974 238 149 33 chr3 72765716 72766869 -145270289 - L1MCa LINE L1 -4238 2703 1417 582 297 26 19 chr3 72766878 72767144 -145270014 - L1MCa LINE L1 -5904 519 252 537 247 20 20 chr3 72767246 72767396 -145269762 - Charlie1 DNA MER1_type -2598 163 14 483 350 39 8 chr3 72767399 72767656 -145269502 + L2 LINE L2 2804 3068 -245 399 41 0 0 chr3 72769037 72769086 -145268072 + (TG)n Simple_repeat Simple_repeat 2 50 0 346 274 65 81 chr3 72769086 72769108 -145268050 - L2 LINE L2 0 3272 3251 1825 124 59 59 chr3 72769108 72769264 -145267894 + THE1C LTR MaLR 1 156 -219 2482 38 0 3 chr3 72769264 72769553 -145267605 - AluY SINE Alu -22 289 2 1825 124 59 59 chr3 72769553 72769767 -145267391 + THE1C LTR MaLR 155 371 -4 346 274 65 81 chr3 72769767 72769868 -145267290 - L2 LINE L2 -21 3251 3151 369 83 67 0 chr3 72770088 72770148 -145267010 + MLT2A1 LTR ERVL 339 402 -42 330 276 0 20 chr3 72770178 72770276 -145266882 + L1MC4 LINE L1 6607 6702 -1340 275 130 0 0 chr3 72770331 72770377 -145266781 + MLT2A2 LTR ERVL 400 445 -8 487 266 89 19 chr3 72770384 72770598 -145266560 + HAL1 LINE L1 666 894 -1613 281 237 145 0 chr3 72770606 72770682 -145266476 - MER7C DNA MER2_type 0 603 517 237 307 92 46 chr3 72770738 72770891 -145266267 - L2 LINE L2 -1015 2299 2140 2872 141 20 41 chr3 72770896 72771435 -145265723 - MER7C DNA MER2_type -74 528 1 216 67 0 0 chr3 72772223 72772253 -145264905 + (TC)n Simple_repeat Simple_repeat 2 31 0 186 103 0 0 chr3 72772253 72772282 -145264876 + (CA)n Simple_repeat Simple_repeat 1 29 0 671 260 101 14 chr3 72772282 72772490 -145264668 - MIR SINE MIR -26 236 11 228 91 0 0 chr3 72772495 72772528 -145264630 + MLT1D LTR MaLR 408 440 -65 2184 115 0 0 chr3 72772687 72772974 -145264184 + AluSx SINE Alu 16 302 -10 350 369 19 6 chr3 72773109 72773266 -145263892 + MIR3 SINE MIR 23 181 -27 206 293 0 27 chr3 72774447 72774522 -145262636 + GA-rich Low_complexity Low_complexity 1 73 0 256 235 62 0 chr3 72775610 72775691 -145261467 + L1MC4a LINE L1 5834 5919 -1889 226 244 0 0 chr3 72775840 72775885 -145261273 - MLT1J1 LTR MaLR -116 330 286 1860 174 0 7 chr3 72776009 72776302 -145260856 - AluJo SINE Alu -21 291 1 276 149 0 0 chr3 72776413 72776460 -145260698 + (CA)n Simple_repeat Simple_repeat 2 48 0 195 69 0 0 chr3 72776459 72776488 -145260670 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 180 364 97 14 chr3 72776686 72776903 -145260255 + L3 LINE CR1 529 763 -814 237 248 148 50 chr3 72777168 72777269 -145259889 - L2 LINE L2 -12 3260 3150 456 255 166 7 chr3 72777319 72777464 -145259694 + MER5A DNA MER1_type 20 187 -2 2145 128 7 0 chr3 72778690 72778994 -145258164 - AluSg SINE Alu -4 306 1 375 23 0 0 chr3 72779207 72779251 -145257907 + (CA)n Simple_repeat Simple_repeat 2 45 0 198 111 83 0 chr3 72780196 72780232 -145256926 + L2 LINE L2 3265 3303 -10 267 31 0 0 chr3 72780233 72780265 -145256893 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 287 269 0 21 chr3 72780451 72780544 -145256614 + GA-rich Low_complexity Low_complexity 1 91 0 275 336 29 0 chr3 72781740 72781844 -145255314 + L2 LINE L2 2606 2712 -602 888 177 78 0 chr3 72781844 72782076 -145255082 + L1MA9 LINE L1 6048 6297 -15 269 314 139 0 chr3 72782131 72782268 -145254890 + L2 LINE L2 2702 2857 -457 601 254 109 25 chr3 72782458 72782816 -145254342 + Charlie7 DNA MER1_type 348 735 -1877 279 277 170 11 chr3 72782997 72783091 -145254067 - MER5A DNA MER1_type -22 167 59 210 330 148 26 chr3 72782998 72783113 -145254045 + MER5A DNA MER1_type 35 163 -26 * 606 334 129 3 chr3 72783125 72783327 -145253831 - L2 LINE L2 0 3313 3138 1792 175 7 7 chr3 72783327 72783630 -145253528 + AluJo SINE Alu 1 303 -9 606 334 129 3 chr3 72783630 72784024 -145253134 - L2 LINE L2 -175 3138 2634 1995 125 0 17 chr3 72784052 72784362 -145252796 + AluY SINE Alu 1 305 0 2764 106 25 0 chr3 72786176 72786583 -145250575 + L1PA11 LINE L1 5757 6173 -1 22765 69 3 1 chr3 72786600 72789693 -145247465 + L1P LINE L1 3 3102 -3044 2512 83 0 14 chr3 72790435 72790797 -145246361 - L1PB1 LINE L1 0 6151 5795 270 176 0 0 chr3 72790812 72790863 -145246295 + (TA)n Simple_repeat Simple_repeat 2 52 0 2737 105 9 5 chr3 72790871 72791301 -145245857 - L1PB1 LINE L1 -359 5792 5361 569 209 35 100 chr3 72791329 72791559 -145245599 - MER20 DNA MER1_type -4 215 1 571 330 125 0 chr3 72793406 72793670 -145243488 + L2 LINE L2 2632 2928 -386 494 232 67 30 chr3 72793859 72794023 -145243135 - L2 LINE L2 -254 3059 2890 1827 155 47 0 chr3 72795058 72795354 -145241804 + AluSg SINE Alu 1 310 0 624 254 47 17 chr3 72795391 72795623 -145241535 + LTR33A LTR ERVL 285 523 0 192 266 114 38 chr3 72795638 72795717 -145241441 - MIR SINE MIR -107 101 17 249 229 0 0 chr3 72795737 72795785 -145241373 - L2 LINE L2 -4 3309 3262 245 262 0 0 chr3 72796360 72796421 -145240737 - MIR SINE MIR -81 127 67 21 0 0 0 chr3 72796860 72796881 -145240277 + AT_rich Low_complexity Low_complexity 1 21 0 675 266 101 40 chr3 72797049 72797560 -145239598 + MLT1G LTR MaLR 10 560 -7 486 264 73 93 chr3 72797719 72798158 -145239000 + MLT1K LTR MaLR 149 578 -10 1446 268 51 20 chr3 72798427 72798938 -145238220 - MLT1E LTR MaLR -37 556 30 471 276 203 16 chr3 72801080 72801272 -145235886 + MIR SINE MIR 16 243 -19 299 331 136 30 chr3 72801583 72801752 -145235406 - MIR3 SINE MIR -13 195 9 257 263 42 42 chr3 72802165 72802260 -145234898 + MIR SINE MIR 98 192 -70 356 307 13 53 chr3 72802900 72803050 -145234108 + L1M4c LINE L1 1698 1841 -4543 315 326 0 0 chr3 72803210 72803302 -145233856 + L1M4c LINE L1 1898 1989 -4574 1167 179 0 58 chr3 72803362 72803602 -145233556 - AluJo SINE Alu 0 312 87 3541 213 41 32 chr3 72803655 72804250 -145232908 + L1M4c LINE L1 2066 2654 -3728 2247 105 0 26 chr3 72804250 72804556 -145232602 + AluSx SINE Alu 1 298 -14 3541 213 41 32 chr3 72804556 72805366 -145231792 + L1M4c LINE L1 2654 3434 -2948 421 229 31 10 chr3 72805405 72805501 -145231657 + MLT1H LTR MaLR 75 172 -377 243 0 0 0 chr3 72806063 72806090 -145231068 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4502 42 2 13 chr3 72806092 72806645 -145230513 - L1PA7 LINE L1 -17 6137 5591 235 325 106 0 chr3 72806657 72806780 -145230378 - MIR3 SINE MIR -61 147 12 5775 175 45 10 chr3 72806919 72808059 -145229099 + ERVL-D LTR ERVL 4261 5440 -324 341 162 15 0 chr3 72808061 72808129 -145229029 + (TG)n Simple_repeat Simple_repeat 2 70 0 1612 166 25 19 chr3 72808221 72808546 -145228612 + ERVL-D LTR ERVL 5430 5756 -8 2026 134 115 5 chr3 72808546 72808878 -145228280 + MLT2D LTR ERVL 1 380 -34 483 18 0 0 chr3 72808878 72808934 -145228224 + (CA)n Simple_repeat Simple_repeat 2 57 0 2026 134 115 5 chr3 72808934 72808974 -145228184 + MLT2D LTR ERVL 380 414 0 458 218 64 9 chr3 72808975 72809085 -145228073 + MIR SINE MIR 101 216 -46 346 328 57 0 chr3 72809242 72809364 -145227794 + L2 LINE L2 3185 3313 0 3016 53 8 3 chr3 72809424 72809804 -145227354 - L1PA6 LINE L1 -4 6150 5769 10471 46 1 1 chr3 72809807 72811870 -145225288 - L1PA5 LINE L1 -8 6146 4085 10455 47 2 1 chr3 72811970 72813330 -145223828 - L1PA6 LINE L1 -1230 4916 3555 3070 173 42 3 chr3 72813317 72813918 -145223240 - L1P LINE L1 -5512 634 11 * 25 31 0 0 chr3 72814500 72814532 -145222626 + AT_rich Low_complexity Low_complexity 1 32 0 1174 249 136 57 chr3 72815018 72815524 -145221634 + MLT1H LTR MaLR 2 547 -2 21 0 0 0 chr3 72815605 72815626 -145221532 + AT_rich Low_complexity Low_complexity 1 21 0 497 305 47 21 chr3 72815679 72815915 -145221243 - MLT1K LTR MaLR -3 585 344 1959 152 14 75 chr3 72815917 72816345 -145220813 + MSTB LTR MaLR 1 402 -24 263 281 61 0 chr3 72816381 72816463 -145220695 - MLT1K LTR MaLR -308 280 194 303 278 51 41 chr3 72816590 72816688 -145220470 - MIR SINE MIR -110 98 32 2606 107 3 8 chr3 72817983 72818348 -145218810 + THE1B LTR MaLR 1 363 -1 335 227 31 49 chr3 72818391 72818554 -145218604 - L1ME4a LINE L1 0 6121 5962 22 0 0 0 chr3 72818723 72818745 -145218413 + AT_rich Low_complexity Low_complexity 1 22 0 526 224 17 69 chr3 72819418 72819584 -145217574 + MER5A DNA MER1_type 16 177 -1 23 33 0 0 chr3 72820695 72820725 -145216433 + AT_rich Low_complexity Low_complexity 1 30 0 31 76 0 0 chr3 72820884 72820950 -145216208 + AT_rich Low_complexity Low_complexity 1 66 0 394 266 56 19 chr3 72820953 72821167 -145215991 - L1ME4a LINE L1 -206 5915 5694 370 118 0 29 chr3 72821345 72821413 -145215745 + L1PA8 LINE L1 6100 6165 -7 415 311 114 71 chr3 72821562 72821958 -145215200 - L2 LINE L2 0 3272 2860 193 323 0 30 chr3 72822147 72822246 -145214912 + MIR SINE MIR 164 259 -3 248 314 119 37 chr3 72822263 72822431 -145214727 - MIR3 SINE MIR -68 194 15 1190 180 140 27 chr3 72822455 72822783 -145214375 - MLT1A1 LTR MaLR 0 365 1 481 284 206 5 chr3 72822969 72823173 -145213985 - MIR SINE MIR -7 255 11 461 297 110 0 chr3 72824117 72824272 -145212886 - MIR SINE MIR -9 253 82 459 318 5 30 chr3 72824415 72824613 -145212545 + L2 LINE L2 3118 3310 -3 307 261 0 57 chr3 72824806 72824894 -145212264 + MIR SINE MIR 65 147 -115 462 246 0 28 chr3 72824914 72825046 -145212112 + MLT1C LTR MaLR 263 466 -1 1151 251 78 44 chr3 72825419 72825485 -145211673 - L1ME3A LINE L1 -5 6165 6103 2188 100 3 20 chr3 72825485 72825786 -145211372 - AluSc SINE Alu -13 296 1 1151 251 78 44 chr3 72825786 72825956 -145211202 - L1ME3A LINE L1 -67 6103 5940 576 89 0 0 chr3 72825956 72826035 -145211123 - MADE1 DNA Mariner -1 79 1 1151 251 78 44 chr3 72826035 72826348 -145210810 - L1ME3A LINE L1 -230 5940 5596 536 227 13 0 chr3 72826362 72826516 -145210642 - L1ME3A LINE L1 -687 5475 5320 451 33 0 0 chr3 72827349 72827409 -145209749 + L1PA2 LINE L1 6092 6151 -4 213 39 0 0 chr3 72827414 72827440 -145209718 + (A)n Simple_repeat Simple_repeat 1 26 0 304 331 7 7 chr3 72827780 72827916 -145209242 + L1ME LINE L1 5631 5766 -355 27 49 0 0 chr3 72827971 72828012 -145209146 + AT_rich Low_complexity Low_complexity 1 41 0 2380 89 0 0 chr3 72828478 72828781 -145208377 + AluSq SINE Alu 1 303 -10 226 297 16 0 chr3 72828944 72829008 -145208150 - MIR SINE MIR -195 67 3 571 280 14 37 chr3 72829051 72829265 -145207893 + MIR SINE MIR 49 257 -5 528 238 150 0 chr3 72829654 72829814 -145207344 - MER5A DNA MER1_type -3 186 3 282 267 38 76 chr3 72829827 72829958 -145207200 - MER5B DNA MER1_type -3 175 50 433 289 114 14 chr3 72830124 72830335 -145206823 - MIR SINE MIR -4 258 27 234 0 0 0 chr3 72830342 72830368 -145206790 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5725 95 7 4 chr3 72830377 72830757 -145206401 - L1PA10 LINE L1 -2 6166 5789 1862 132 11 0 chr3 72830757 72831029 -145206129 - AluSp SINE Alu -38 275 1 5725 95 7 4 chr3 72831029 72831490 -145205668 - L1PA10 LINE L1 -379 5789 5322 2940 208 44 26 chr3 72831500 72832278 -145204880 - L1ME1 LINE L1 -4 6162 5371 25 31 0 0 chr3 72832384 72832416 -145204742 + AT_rich Low_complexity Low_complexity 1 32 0 25 31 0 0 chr3 72832447 72832479 -145204679 + AT_rich Low_complexity Low_complexity 1 32 0 227 283 83 67 chr3 72833041 72833221 -145203937 - MIR SINE MIR -33 229 47 616 263 89 13 chr3 72833722 72833946 -145203212 - MIR SINE MIR -12 250 10 192 327 0 0 chr3 72834142 72834194 -145202964 + L2 LINE L2 3209 3260 -12 262 278 95 81 chr3 72834927 72835191 -145201967 - MLT1L LTR MaLR -60 550 260 213 121 0 0 chr3 72835302 72835335 -145201823 + (CA)n Simple_repeat Simple_repeat 2 34 0 1067 269 54 23 chr3 72835491 72835881 -145201277 + MLT1I LTR MaLR 8 409 0 456 269 144 6 chr3 72836846 72837013 -145200145 + MIR SINE MIR 72 261 -1 255 301 86 43 chr3 72837143 72837352 -145199806 - L2 LINE L2 -35 3237 3020 583 236 0 0 chr3 72837713 72837836 -145199322 - MER94 DNA DNA 0 134 12 802 87 0 0 chr3 72837910 72838014 -145199144 - AluY SINE Alu -10 301 198 21 36 0 0 chr3 72838971 72838999 -145198159 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr3 72840188 72840212 -145196946 + (T)n Simple_repeat Simple_repeat 1 24 0 682 268 11 38 chr3 72840663 72840846 -145196312 - MER5B DNA MER1_type 0 178 1 30 0 0 0 chr3 72842223 72842253 -145194905 + AT_rich Low_complexity Low_complexity 1 30 0 685 199 129 0 chr3 72842374 72842535 -145194623 - MER5A DNA MER1_type -1 188 4 288 316 13 17 chr3 72842622 72842819 -145194339 + MER5A DNA MER1_type 28 189 0 204 40 0 0 chr3 72843181 72843206 -145193952 + (CAGA)n Simple_repeat Simple_repeat 4 28 0 293 100 20 0 chr3 72843206 72843256 -145193902 + (ATAAG)n Simple_repeat Simple_repeat 3 53 0 402 301 122 18 chr3 72843633 72843862 -145193296 - MIR SINE MIR 0 262 10 788 254 91 41 chr3 72844723 72845062 -145192096 + MLT1L LTR MaLR 39 394 -221 824 289 79 50 chr3 72845125 72845541 -145191617 + MLT1J2 LTR MaLR 23 450 0 9891 80 9 1 chr3 72845839 72847957 -145189201 - L1PA7 LINE L1 -1 6153 4021 2017 116 12 114 chr3 72848269 72848674 -145188484 + THE1B LTR MaLR 1 364 0 858 250 37 20 chr3 72849125 72849369 -145187789 + MIR SINE MIR 2 249 -13 197 302 206 40 chr3 72849379 72849505 -145187653 + L2 LINE L2 3126 3272 0 497 241 143 15 chr3 72849955 72850088 -145187070 + MER5B DNA MER1_type 3 152 -26 374 186 85 0 chr3 72850102 72850220 -145186938 + L1ME4a LINE L1 5994 6121 0 372 136 25 12 chr3 72850395 72850477 -145186681 - MSTA LTR MaLR 0 428 287 40 21 0 0 chr3 72850481 72850528 -145186630 + AT_rich Low_complexity Low_complexity 1 47 0 1849 158 0 17 chr3 72850560 72850878 -145186280 - AluSx SINE Alu 0 313 1 1674 169 77 15 chr3 72850895 72851233 -145185925 - MSTA LTR MaLR -69 359 1 1699 212 30 28 chr3 72851587 72852021 -145185137 - Zaphod DNA AcHobo -1 4030 3596 282 211 0 11 chr3 72852020 72852115 -145185043 - Zaphod DNA AcHobo -3041 990 897 * 27 92 0 0 chr3 72852127 72852203 -145184955 + AT_rich Low_complexity Low_complexity 1 76 0 1182 221 62 48 chr3 72852223 72852959 -145184199 - Zaphod DNA AcHobo -3158 873 72 640 75 0 28 chr3 72853007 72853113 -145184045 + (GGGAA)n Simple_repeat Simple_repeat 3 105 0 1154 206 151 29 chr3 72853240 72853624 -145183534 + L1MC4 LINE L1 7238 7668 -374 4763 159 30 41 chr3 72853691 72854646 -145182512 + L1PA16 LINE L1 4392 5326 -840 7338 29 5 0 chr3 72854646 72855521 -145181637 + L1PA4 LINE L1 5273 6151 -4 4763 159 30 41 chr3 72855521 72856353 -145180805 + L1PA16 LINE L1 5326 6166 0 540 282 28 6 chr3 72856376 72856557 -145180601 + L1MC4 LINE L1 7694 7878 -164 381 349 38 34 chr3 72856795 72857030 -145180128 - L2 LINE L2 0 3313 3078 674 346 35 9 chr3 72858874 72859302 -145177856 - MLT1K LTR MaLR -5 583 145 423 327 116 34 chr3 72860086 72860499 -145176659 - L1MEd LINE L1 -5104 1015 569 2786 102 0 0 chr3 72861132 72861496 -145175662 + THE1B LTR MaLR 1 364 0 11654 34 3 0 chr3 72862471 72864667 -145172491 + L1PA4 LINE L1 3916 6116 -39 236 196 39 20 chr3 72864784 72864835 -145172323 + MIR SINE MIR 94 145 -117 5262 84 3 0 chr3 72864838 72865554 -145171604 + L1PA14 LINE L1 5431 6148 -13 1427 231 19 0 chr3 72865562 72865990 -145171168 + L1MC2 LINE L1 2955 3390 -2756 5553 160 19 3 chr3 72866005 72867048 -145170110 + L1MC2 LINE L1 5276 6335 -9 772 311 128 35 chr3 72867749 72868234 -145168924 - MLT1K LTR MaLR -51 537 8 529 325 50 69 chr3 72868332 72868609 -145168549 + L2 LINE L2 2971 3242 -30 959 291 8 90 chr3 72869985 72870716 -145166442 + L2 LINE L2 2412 3090 -182 198 0 0 0 chr3 72871623 72871645 -145165513 + (TA)n Simple_repeat Simple_repeat 1 22 0 235 333 73 30 chr3 72872006 72872171 -145164987 - LTR67 LTR ERVL -265 292 121 1248 286 27 27 chr3 72872212 72872388 -145164770 + LTR16A LTR ERVL 16 191 -259 3462 146 41 4 chr3 72872388 72872607 -145164551 - MER41C LTR ERV1 0 554 345 180 0 0 0 chr3 72872607 72872627 -145164531 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3462 146 41 4 chr3 72872627 72872941 -145164217 - MER41C LTR ERV1 -209 345 1 1248 286 27 27 chr3 72872941 72873176 -145163982 + LTR16A LTR ERVL 190 427 -23 577 316 65 14 chr3 72874086 72874301 -145162857 + MIR SINE MIR 21 246 -16 2384 161 40 0 chr3 72874675 72875053 -145162105 + MSTD LTR MaLR 4 396 0 250 363 30 0 chr3 72875061 72875177 -145161981 - MIR SINE MIR -61 147 28 2506 181 12 32 chr3 72876057 72876560 -145160598 + L1MB2 LINE L1 5671 6163 -8 396 0 0 0 chr3 72876560 72876604 -145160554 + (GA)n Simple_repeat Simple_repeat 1 44 0 566 230 123 5 chr3 72876757 72876944 -145160214 + LTR16B LTR ERVL 256 464 0 201 346 46 74 chr3 72877053 72877270 -145159888 + L2 LINE L2 3057 3267 -5 232 179 0 0 chr3 72877414 72877453 -145159705 - L2 LINE L2 -7 3306 3268 330 229 72 12 chr3 72878506 72878589 -145158569 + MIR3 SINE MIR 113 200 -8 249 386 44 12 chr3 72880046 72880207 -145156951 - MIR3 SINE MIR -54 154 19 2295 97 3 0 chr3 72880263 72880561 -145156597 + AluSp SINE Alu 1 299 -14 1172 305 40 41 chr3 72881733 72882290 -145154868 + MLT1K LTR MaLR 2 557 -31 420 269 11 0 chr3 72882327 72882420 -145154738 - L2 LINE L2 0 3272 3179 353 308 53 75 chr3 72883235 72883462 -145153696 + MIR SINE MIR 17 238 -24 484 339 56 0 chr3 72883579 72883774 -145153384 - MIR SINE MIR 0 262 57 303 317 18 39 chr3 72883807 72883991 -145153167 - MER5A DNA MER1_type -6 172 4 306 364 93 0 chr3 72886991 72887109 -145150049 + L2 LINE L2 3134 3262 -10 723 161 87 0 chr3 72888149 72888298 -145148860 + MER5B DNA MER1_type 17 178 0 263 229 267 9 chr3 72888506 72888611 -145148547 + L1ME3 LINE L1 5685 5816 -1992 842 241 70 111 chr3 72888627 72888745 -145148413 - L2 LINE L2 -18 3295 3174 956 236 6 0 chr3 72888745 72888919 -145148239 - MER45A DNA AcHobo -3 175 1 842 241 70 111 chr3 72888919 72888950 -145148208 - L2 LINE L2 -139 3174 3143 2180 68 4 0 chr3 72888950 72889214 -145147944 + AluSp SINE Alu 35 299 -14 842 241 70 111 chr3 72889214 72889461 -145147697 - L2 LINE L2 -170 3143 2914 251 319 8 17 chr3 72889526 72889645 -145147513 - L2 LINE L2 -598 2716 2599 279 0 0 0 chr3 72889846 72889877 -145147281 + (CA)n Simple_repeat Simple_repeat 2 32 0 1974 151 3 3 chr3 72892381 72892685 -145144473 + AluJb SINE Alu 4 307 -5 306 203 112 77 chr3 72892854 72892997 -145144161 - MIR SINE MIR -114 148 1 618 123 8 8 chr3 72893047 72893149 -145144009 - MER5A DNA MER1_type -83 106 4 237 132 0 0 chr3 72894653 72894691 -145142467 + (T)n Simple_repeat Simple_repeat 1 38 0 593 227 11 40 chr3 72897367 72897543 -145139615 + L1ME3 LINE L1 5992 6162 0 953 238 44 0 chr3 72898260 72898466 -145138692 - MER58A DNA MER1_type 0 224 10 202 188 0 0 chr3 72898961 72898993 -145138165 + polypurine Low_complexity Low_complexity 2 33 0 216 0 0 0 chr3 72899191 72899215 -145137943 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 26 0 0 0 chr3 72900126 72900152 -145137006 + AT_rich Low_complexity Low_complexity 1 26 0 427 216 111 33 chr3 72901159 72901312 -145135846 - L2 LINE L2 -8 3305 3141 682 267 91 62 chr3 72901358 72901744 -145135414 + MLT1F1 LTR MaLR 1 422 -145 332 296 10 20 chr3 72901748 72901846 -145135312 - L2 LINE L2 -34 3279 3183 221 351 107 18 chr3 72901851 72902019 -145135139 + MIR SINE MIR 24 206 -56 21 89 0 0 chr3 72902091 72902147 -145135011 + AT_rich Low_complexity Low_complexity 1 56 0 227 275 99 30 chr3 72903710 72903841 -145133317 - MER20B DNA MER1_type -594 189 50 803 130 0 8 chr3 72903915 72904038 -145133120 + FLAM_A SINE Alu 21 142 0 457 226 276 30 chr3 72905869 72906068 -145131090 + MIR SINE MIR 10 257 -5 201 259 17 17 chr3 72906064 72906122 -145131036 + MIR SINE MIR 58 115 -147 * 579 279 82 39 chr3 72906388 72906621 -145130537 + MIR SINE MIR 1 243 -19 648 272 42 19 chr3 72907382 72907595 -145129563 - MIR SINE MIR -7 255 38 1862 151 10 3 chr3 72909357 72909656 -145127502 - AluSx SINE Alu -11 301 1 800 93 0 9 chr3 72910020 72910127 -145127031 + AluY SINE Alu 188 293 -18 1501 160 3 60 chr3 72910486 72910804 -145126354 - AluJo SINE Alu -12 300 1 16229 119 25 18 chr3 72911073 72913473 -145123685 - Tigger1 DNA MER2_type -1 2417 1 2203 91 3 53 chr3 72914161 72914480 -145122678 - AluSg SINE Alu -7 303 1 413 216 28 150 chr3 72914763 72914789 -145122369 + MER53 DNA DNA 1 29 -160 219 69 0 0 chr3 72914789 72914818 -145122340 + (CAAG)n Simple_repeat Simple_repeat 1 29 0 413 216 28 150 chr3 72914818 72915004 -145122154 + MER53 DNA DNA 29 187 -2 2571 43 3 0 chr3 72915391 72915690 -145121468 - AluY SINE Alu -11 300 1 341 136 15 0 chr3 72915865 72915931 -145121227 + GA-rich Low_complexity Low_complexity 2 68 0 30 0 0 0 chr3 72918582 72918612 -145118546 + AT_rich Low_complexity Low_complexity 1 30 0 2368 107 0 0 chr3 72918878 72919186 -145117972 - AluSx SINE Alu -4 308 1 201 211 0 0 chr3 72919579 72919631 -145117527 + (CCG)n Simple_repeat Simple_repeat 2 53 0 1744 143 66 0 chr3 72920542 72920843 -145116315 - L1MB3 LINE L1 0 6183 5863 308 246 0 0 chr3 72922379 72922436 -145114722 - L2 LINE L2 -7 3265 3209 24 32 0 0 chr3 72922616 72922647 -145114511 + AT_rich Low_complexity Low_complexity 1 31 0 655 230 171 9 chr3 72922913 72923130 -145114028 + MIR SINE MIR 11 262 0 1672 182 22 62 chr3 72924642 72924864 -145112294 - MER2 DNA MER2_type 0 344 115 1740 173 23 0 chr3 72924864 72925165 -145111993 + AluJb SINE Alu 5 312 0 1672 182 22 62 chr3 72925165 72925183 -145111975 - MER2 DNA MER2_type -229 115 98 252 0 0 0 chr3 72925183 72925211 -145111947 + (TG)n Simple_repeat Simple_repeat 2 29 0 1672 182 22 62 chr3 72925211 72925327 -145111831 - MER2 DNA MER2_type -246 98 1 2305 75 7 10 chr3 72929237 72929545 -145107613 - AluSg SINE Alu -3 307 1 220 248 128 73 chr3 72935504 72935613 -145101545 - L2 LINE L2 0 3313 3199 2147 124 17 0 chr3 72935762 72936060 -145101098 + AluSx SINE Alu 1 303 -9 487 324 85 39 chr3 72936084 72936494 -145100664 - L2 LINE L2 -413 2901 2473 239 321 100 32 chr3 72938273 72938463 -145098695 + L2 LINE L2 3109 3311 -2 220 431 9 0 chr3 72938538 72938654 -145098504 + L2 LINE L2 3156 3272 0 1640 163 58 4 chr3 72938715 72938991 -145098167 + AluJo SINE Alu 1 291 -21 25 0 0 0 chr3 72939278 72939303 -145097855 + AT_rich Low_complexity Low_complexity 1 25 0 650 259 47 31 chr3 72941214 72941407 -145095751 - MLT1J LTR MaLR -313 198 3 296 351 61 22 chr3 72941512 72941740 -145095418 + MLT1K LTR MaLR 344 580 -8 217 288 0 0 chr3 72941747 72941806 -145095352 + GA-rich Low_complexity Low_complexity 2 60 0 274 274 109 22 chr3 72942662 72942876 -145094282 - L2 LINE L2 0 3313 3026 210 305 200 21 chr3 72943939 72944129 -145093029 - MIR SINE MIR -3 259 36 1037 172 0 0 chr3 72944169 72944332 -145092826 + FRAM SINE Alu 3 165 -11 288 141 16 31 chr3 72945602 72945666 -145091492 + MER5B DNA MER1_type 1 63 -115 512 162 71 0 chr3 72945667 72945766 -145091392 - MER53 DNA DNA -82 107 2 281 285 211 43 chr3 72945772 72945903 -145091255 - L2 LINE L2 -963 2351 2243 539 171 140 73 chr3 72945903 72946067 -145091091 - MER5B DNA MER1_type -3 175 1 281 285 211 43 chr3 72946067 72946395 -145090763 - L2 LINE L2 -1071 2243 1815 338 212 186 18 chr3 72946643 72946756 -145090402 + MIR SINE MIR 110 241 -21 255 235 29 0 chr3 72947355 72947423 -145089735 - MIR SINE MIR -46 216 147 468 162 0 81 chr3 72947780 72947821 -145089337 - MER20 DNA MER1_type 0 219 176 1726 154 128 21 chr3 72947821 72948158 -145089000 + THE1C LTR MaLR 3 375 0 468 162 0 81 chr3 72948158 72948215 -145088943 - MER20 DNA MER1_type -43 176 129 22 0 0 0 chr3 72948373 72948395 -145088763 + AT_rich Low_complexity Low_complexity 1 22 0 1541 185 31 21 chr3 72948799 72949086 -145088072 - AluJb SINE Alu -22 290 1 1598 146 0 0 chr3 72949097 72949343 -145087815 - L1MA5 LINE L1 -35 6265 6020 1059 296 91 58 chr3 72949416 72950142 -145087016 - HAL1 LINE L1 -407 2100 1351 1640 194 53 72 chr3 72950142 72950556 -145086602 - MLT1C LTR MaLR 0 467 62 4644 165 71 15 chr3 72950556 72951373 -145085785 - MER21B LTR ERV1 0 863 1 1640 194 53 72 chr3 72951373 72951427 -145085731 - MLT1C LTR MaLR -405 62 8 2345 118 31 33 chr3 72951506 72951895 -145085263 + MER41E LTR ERV1 1 388 -124 256 114 23 0 chr3 72952028 72952072 -145085086 - AluJ/FRAM SINE Alu -30 272 228 * 933 134 0 0 chr3 72952070 72952204 -145084954 + MER41E LTR ERV1 354 487 -25 1011 237 91 64 chr3 72952237 72952785 -145084373 - HAL1 LINE L1 -1165 1342 780 1438 188 65 24 chr3 72952862 72953154 -145084004 + AluJb SINE Alu 1 304 -8 1868 143 0 77 chr3 72954073 72954409 -145082749 - AluSx SINE Alu -2 310 1 266 172 11 32 chr3 72954601 72954694 -145082464 + (TA)n Simple_repeat Simple_repeat 2 92 0 7420 122 46 26 chr3 72954702 72955335 -145081823 - Tigger3b DNA MER2_type -1797 1231 561 2535 45 0 3 chr3 72955335 72955644 -145081514 + AluY SINE Alu 1 308 -3 7420 122 46 26 chr3 72955644 72956217 -145080941 - Tigger3b DNA MER2_type -2467 561 1 328 300 117 72 chr3 72957175 72957535 -145079623 + L1MEd LINE L1 22 397 -5722 345 260 98 70 chr3 72957818 72958206 -145078952 + L1MEd LINE L1 707 1105 -5014 1773 160 0 11 chr3 72958287 72958556 -145078602 + AluJb SINE Alu 9 274 -38 1234 66 8 4 chr3 72958558 72958803 -145078355 + (GAAA)n Simple_repeat Simple_repeat 1 246 0 572 288 128 35 chr3 72958840 72959323 -145077835 + L1MEd LINE L1 1171 1698 -4612 739 294 87 46 chr3 72959789 72960327 -145076831 + L2 LINE L2 2748 3305 -8 349 326 35 21 chr3 72960595 72960736 -145076422 + MIR3 SINE MIR 39 181 -27 495 316 61 20 chr3 72961672 72961919 -145075239 + MLT1J LTR MaLR 225 481 -30 1821 217 9 102 chr3 72961938 72962505 -145074653 - MLT2B1 LTR ERVL -6 514 1 412 294 65 0 chr3 72963403 72963556 -145073602 + MIR SINE MIR 77 239 -23 4605 88 7 0 chr3 72963642 72964241 -145072917 - L1PA14 LINE L1 0 6161 5559 249 299 26 51 chr3 72964577 72964694 -145072464 - L2 LINE L2 -1 3312 3199 2200 180 14 6 chr3 72965907 72966269 -145070889 - MLT1A1 LTR MaLR 0 365 1 229 282 55 18 chr3 72966282 72966392 -145070766 + (TCTCTG)n Simple_repeat Simple_repeat 1 114 0 650 211 127 0 chr3 72967836 72967978 -145069180 + MLT1E LTR MaLR 1 160 -433 968 239 83 0 chr3 72968073 72968278 -145068880 + MLT1E LTR MaLR 337 558 -35 272 237 17 0 chr3 72969083 72969142 -145068016 + L1MD1 LINE L1 5537 5596 -2212 1224 214 8 19 chr3 72969173 72969430 -145067728 + L1MDa LINE L1 1 254 -6286 2512 183 25 30 chr3 72969430 72969989 -145067169 + L1MD1 LINE L1 5682 6237 -5 1058 244 20 0 chr3 72970094 72970340 -145066818 - MIR SINE MIR 0 262 12 321 241 114 13 chr3 72970468 72970547 -145066611 + MER63 DNA MER1_type 689 775 -287 1360 206 91 115 chr3 72971154 72971581 -145065577 - MLT1E LTR MaLR 0 593 151 560 195 51 0 chr3 72971583 72971701 -145065457 - FRAM SINE Alu -15 161 38 587 266 7 13 chr3 72971703 72971857 -145065301 - MLT1E LTR MaLR -433 160 8 1442 159 3 118 chr3 72971987 72972327 -145064831 - AluSx SINE Alu -11 301 1 1089 227 185 18 chr3 72972333 72972819 -145064339 - L2 LINE L2 0 3313 2739 2109 140 0 0 chr3 72973114 72973429 -145063729 - AluSx SINE Alu 0 315 1 1143 185 34 0 chr3 72973748 72973953 -145063205 - MER20 DNA MER1_type -2 217 6 182 234 0 0 chr3 72973970 72974017 -145063141 + MIR SINE MIR 79 125 -137 180 189 0 0 chr3 72974205 72974242 -145062916 + L2 LINE L2 3269 3305 -8 186 219 0 0 chr3 72974402 72974443 -145062715 - MIR SINE MIR -5 257 217 286 277 252 0 chr3 72974760 72974879 -145062279 + MER117 DNA MER1_type 16 164 -33 439 287 138 0 chr3 72974958 72975132 -145062026 + L2 LINE L2 2402 2599 -715 902 274 97 32 chr3 72975138 72975572 -145061586 + L2 LINE L2 2852 3313 0 1120 142 86 25 chr3 72975716 72975913 -145061245 - MER3 DNA MER1_type 0 209 1 2418 125 0 22 chr3 72976763 72977131 -145060027 + THE1B LTR MaLR 5 364 0 781 222 65 61 chr3 72978422 72978652 -145058506 + MIR SINE MIR 20 250 -12 386 311 43 12 chr3 72978923 72979084 -145058074 + MIR SINE MIR 36 201 -61 424 295 40 35 chr3 72979201 72979374 -145057784 - MIR3 SINE MIR 0 208 35 893 248 25 17 chr3 72979540 72979778 -145057380 + LTR16C LTR ERVL 252 491 0 180 125 0 0 chr3 72979821 72979853 -145057305 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 204 40 0 0 chr3 72980039 72980064 -145057094 + (CACAA)n Simple_repeat Simple_repeat 5 29 0 549 277 162 27 chr3 72981745 72982073 -145055085 - MLT1J1 LTR MaLR -7 439 68 2211 117 3 0 chr3 72982402 72982692 -145054466 - AluSx SINE Alu -21 291 1 197 184 0 0 chr3 72982703 72982741 -145054417 + MIR3 SINE MIR 161 198 -10 287 259 0 47 chr3 72982882 72982967 -145054191 + MLT1K LTR MaLR 401 481 -107 207 305 0 0 chr3 72983183 72983242 -145053916 + L2 LINE L2 3207 3265 -7 1917 135 17 7 chr3 72983270 72983559 -145053599 + AluSx SINE Alu 1 292 -20 312 283 42 101 chr3 72983574 72983811 -145053347 + MIR SINE MIR 2 224 -38 330 277 50 28 chr3 72984086 72984227 -145052931 + MIR SINE MIR 49 192 -70 1525 141 72 29 chr3 72984668 72984944 -145052214 + AluJb SINE Alu 23 310 -2 241 163 0 41 chr3 72986794 72986843 -145050315 + MIR SINE MIR 77 123 -139 1103 336 48 16 chr3 72986855 72987126 -145050032 - L2 LINE L2 -17 3296 3035 1093 168 53 5 chr3 72987126 72987335 -145049823 - MER20 DNA MER1_type 0 219 1 1103 336 48 16 chr3 72987335 72988014 -145049144 - L2 LINE L2 -278 3035 2306 2171 129 0 0 chr3 72988201 72988511 -145048647 - AluSx SINE Alu -2 310 1 1062 243 9 0 chr3 72989121 72989335 -145047823 - MER58A DNA MER1_type 0 224 9 1999 138 0 0 chr3 72989449 72989767 -145047391 + AluSx SINE Alu 1 312 0 1077 258 99 90 chr3 72989900 72990323 -145046835 - MLT1H LTR MaLR 0 549 123 240 232 36 0 chr3 72990927 72990983 -145046175 - MLT1K LTR MaLR -2 586 529 975 223 259 20 chr3 72991642 72991997 -145045161 - LTR16C LTR ERVL 0 491 52 208 328 120 21 chr3 72992106 72992298 -145044860 - L2 LINE L2 -655 2659 2449 252 301 120 18 chr3 72992494 72992770 -145044388 - L2 LINE L2 -563 2751 2448 355 191 12 12 chr3 72992867 72992951 -145044207 - MER53 DNA DNA 0 189 106 209 259 0 17 chr3 72993430 72993488 -145043670 + C-rich Low_complexity Low_complexity 4 60 0 1786 191 42 16 chr3 72993628 72994006 -145043152 + MLT1B LTR MaLR 1 388 -2 1999 126 63 0 chr3 72994028 72994329 -145042829 - MER2 DNA MER2_type -25 320 1 204 40 0 0 chr3 72994454 72994479 -145042679 + (CA)n Simple_repeat Simple_repeat 2 26 0 4731 217 92 8 chr3 73045165 73046347 -144990811 - L1MDa LINE L1 -5179 1361 81 326 286 12 89 chr3 73047131 73047299 -144989859 - MIR SINE MIR -42 220 66 445 269 9 9 chr3 73047725 73047833 -144989325 + L2 LINE L2 3206 3313 0 361 356 95 19 chr3 73047866 73048130 -144989028 + L2 LINE L2 3002 3285 -28 1058 278 72 46 chr3 73048418 73048863 -144988295 - L2 LINE L2 -9 3304 2872 322 82 311 0 chr3 73048863 73048924 -144988234 + MADE1 DNA Mariner 1 80 0 1058 278 72 46 chr3 73048924 73049048 -144988110 - L2 LINE L2 -441 2872 2753 459 0 0 0 chr3 73049048 73049099 -144988059 + (CA)n Simple_repeat Simple_repeat 2 52 0 2113 118 3 0 chr3 73049108 73049396 -144987762 - AluSg SINE Alu -21 289 1 1058 278 72 46 chr3 73049396 73049523 -144987635 - L2 LINE L2 -567 2746 2590 1420 271 133 4 chr3 73049523 73049981 -144987177 + MLT1G1 LTR MaLR 77 593 -2 678 293 29 29 chr3 73050062 73050308 -144986850 + MIR SINE MIR 15 260 -2 2130 133 10 7 chr3 73050670 73050978 -144986180 - AluSx SINE Alu -1 311 3 819 211 0 0 chr3 73051099 73051241 -144985917 + AluJb SINE Alu 142 283 -29 387 0 0 0 chr3 73051252 73051295 -144985863 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 252 143 71 57 chr3 73051624 73051694 -144985464 + HsTC2 DNA Tc2 1807 1877 -21 834 240 181 0 chr3 73051877 73052181 -144984977 + L1M4 LINE L1 4964 5322 -824 324 218 10 0 chr3 73052189 73052290 -144984868 + (TA)n Simple_repeat Simple_repeat 2 103 0 24 53 0 0 chr3 73053252 73053290 -144983868 + AT_rich Low_complexity Low_complexity 1 38 0 613 323 73 13 chr3 73053886 73054199 -144982959 + MLT1K LTR MaLR 22 353 -235 247 196 71 0 chr3 73054690 73054746 -144982412 + MLT1K LTR MaLR 527 586 -2 512 319 72 0 chr3 73054919 73055085 -144982073 - MER5A DNA MER1_type -6 183 6 577 252 40 0 chr3 73055355 73055506 -144981652 - Charlie8 DNA MER1_type -2190 227 71 937 221 98 0 chr3 73055543 73055747 -144981411 + MIR SINE MIR 15 238 -24 201 277 21 0 chr3 73055715 73055762 -144981396 + L2 LINE L2 3252 3299 -14 * 224 232 355 14 chr3 73055905 73056043 -144981115 + MIR SINE MIR 70 254 -8 198 0 0 0 chr3 73056263 73056285 -144980873 + (A)n Simple_repeat Simple_repeat 1 22 0 2005 113 38 9 chr3 73056908 73057228 -144979930 - L1PB2 LINE L1 -64 6087 5759 424 330 0 38 chr3 73057231 73057440 -144979718 + L2 LINE L2 2852 3052 -220 302 256 111 0 chr3 73057476 73057566 -144979592 + L2 LINE L2 3214 3313 0 1005 184 0 0 chr3 73057744 73057923 -144979235 - L1MB3 LINE L1 -2 6181 6003 381 299 12 31 chr3 73058730 73058956 -144978202 + L1ME LINE L1 5258 5485 -2300 2013 220 121 4 chr3 73058957 73059452 -144977706 + MER68 LTR ERV1 1 553 -9 311 286 140 39 chr3 73059452 73059839 -144977319 + L1ME LINE L1 5474 5886 -284 2234 99 3 0 chr3 73059905 73060199 -144976959 + AluY SINE Alu 1 295 -16 344 279 9 18 chr3 73060448 73060559 -144976599 + CT-rich Low_complexity Low_complexity 4 113 0 435 269 71 28 chr3 73061374 73061556 -144975602 - MIR SINE MIR -72 190 1 1614 181 17 20 chr3 73061867 73062159 -144974999 + AluJo SINE Alu 1 291 -21 1974 120 70 67 chr3 73062171 73062479 -144974679 + THE1C LTR MaLR 1 312 -63 2012 122 7 3 chr3 73062479 73062782 -144974376 - AluSg SINE Alu -6 304 1 1974 120 70 67 chr3 73062782 73062847 -144974311 + THE1C LTR MaLR 312 375 0 270 0 0 0 chr3 73063442 73063472 -144973686 + (TG)n Simple_repeat Simple_repeat 2 31 0 23 0 0 0 chr3 73064595 73064618 -144972540 + AT_rich Low_complexity Low_complexity 1 23 0 319 263 38 0 chr3 73064630 73064710 -144972448 - L2 LINE L2 -1 3312 3230 261 308 81 50 chr3 73064950 73065148 -144972010 + MIR SINE MIR 17 220 -42 872 171 50 67 chr3 73065148 73065387 -144971771 - MER106A DNA MER1_type -1 235 1 1738 184 3 0 chr3 73066008 73066301 -144970857 + AluJb SINE Alu 5 298 -14 202 246 45 91 chr3 73066466 73066576 -144970582 + MIR SINE MIR 115 219 -43 216 111 0 0 chr3 73066633 73066669 -144970489 + (CA)n Simple_repeat Simple_repeat 2 37 0 319 339 0 27 chr3 73066839 73067021 -144970137 + MIR SINE MIR 6 261 -1 2103 132 0 0 chr3 73067228 73067517 -144969641 - AluSx SINE Alu -6 306 18 644 172 8 25 chr3 73069713 73069856 -144967302 - AluY SINE Alu 0 326 186 238 307 80 0 chr3 73069841 73069916 -144967242 + MER91C DNA MER1_type 60 140 0 * 31 68 0 0 chr3 73071523 73071582 -144965576 + AT_rich Low_complexity Low_complexity 1 59 0 23 68 0 0 chr3 73071789 73071833 -144965325 + AT_rich Low_complexity Low_complexity 1 44 0 1706 182 0 7 chr3 73072271 73072568 -144964590 + AluJb SINE Alu 1 295 -17 316 281 193 21 chr3 73073050 73073377 -144963781 - L1ME4a LINE L1 -205 5916 5534 2111 105 0 36 chr3 73073452 73073758 -144963400 + AluSx SINE Alu 1 295 -17 253 266 0 32 chr3 73073845 73073939 -144963219 - L1ME LINE L1 -487 5634 5544 639 245 97 10 chr3 73074317 73074513 -144962645 - MER58A DNA MER1_type 0 224 12 873 216 0 26 chr3 73074646 73074840 -144962318 + MER5A DNA MER1_type 1 189 0 462 255 186 20 chr3 73075726 73075930 -144961228 - MIR SINE MIR -10 252 15 659 280 64 4 chr3 73076161 73076397 -144960761 + MIR SINE MIR 7 256 -6 254 302 85 28 chr3 73076546 73076794 -144960364 + L1MC4 LINE L1 7781 8042 0 25 0 0 0 chr3 73076796 73076821 -144960337 + AT_rich Low_complexity Low_complexity 1 25 0 1751 156 0 0 chr3 73076827 73077083 -144960075 - AluSg SINE Alu -54 256 1 345 47 0 0 chr3 73078417 73078460 -144958698 + (CA)n Simple_repeat Simple_repeat 2 44 0 1720 181 7 4 chr3 73078990 73079339 -144957819 + AluJb SINE Alu 1 350 0 341 250 88 15 chr3 73079477 73079613 -144957545 + L2 LINE L2 3039 3184 -129 789 201 62 11 chr3 73079772 73079951 -144957207 + MIR SINE MIR 13 200 -62 1105 138 5 51 chr3 73080257 73080318 -144956840 - AluJo SINE Alu -117 195 133 2312 107 10 0 chr3 73080318 73080627 -144956531 - AluSx SINE Alu 0 312 1 1105 138 5 51 chr3 73080627 73080761 -144956397 - AluJo SINE Alu -179 133 9 632 244 58 9 chr3 73080774 73081064 -144956094 - L1ME LINE L1 -731 5431 5127 199 333 75 11 chr3 73081112 73081205 -144955953 + MIR3 SINE MIR 5 103 -105 859 222 5 0 chr3 73081207 73081405 -144955753 + MLT2B1 LTR ERVL 1 199 -321 1117 61 0 0 chr3 73081441 73081573 -144955585 + AluSp SINE Alu 1 132 -181 297 326 111 12 chr3 73082380 73082552 -144954606 + MIR SINE MIR 25 213 -49 598 240 116 60 chr3 73082697 73082964 -144954194 + L2 LINE L2 3032 3313 0 14535 83 4 6 chr3 73083558 73086377 -144950781 + L1PA7 LINE L1 3312 6151 -3 307 274 48 55 chr3 73086522 73086668 -144950490 + L1ME4a LINE L1 5960 6104 -17 1896 196 14 23 chr3 73086759 73087187 -144949971 - MER90 LTR ERV1 -19 595 172 348 24 0 0 chr3 73088439 73088480 -144948678 + (CA)n Simple_repeat Simple_repeat 1 41 0 252 333 29 9 chr3 73088683 73088788 -144948370 - L2 LINE L2 -43 3270 3164 262 244 26 26 chr3 73089384 73089462 -144947696 + (TATG)n Simple_repeat Simple_repeat 3 80 0 229 138 0 138 chr3 73089586 73089651 -144947507 - MIR SINE MIR 0 262 207 370 294 159 10 chr3 73090055 73090256 -144946902 + MIR SINE MIR 16 246 -16 2194 111 10 0 chr3 73090974 73091281 -144945877 - AluSx SINE Alu -1 311 2 417 103 5 88 chr3 73091975 73092169 -144944989 + (TA)n Simple_repeat Simple_repeat 1 178 0 214 175 18 18 chr3 73092207 73092264 -144944894 + (CATA)n Simple_repeat Simple_repeat 2 58 0 320 83 10 104 chr3 73092317 73092509 -144944649 + (TA)n Simple_repeat Simple_repeat 1 174 0 397 330 113 28 chr3 73092527 73092739 -144944419 + MIR SINE MIR 12 241 -21 349 217 8 145 chr3 73092972 73093221 -144943937 - L1MC4 LINE L1 -15 8027 7813 23 0 0 0 chr3 73093486 73093509 -144943649 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr3 73093772 73093806 -144943352 + AT_rich Low_complexity Low_complexity 1 34 0 493 276 39 83 chr3 73093841 73094095 -144943063 + MIR SINE MIR 20 262 0 337 214 0 0 chr3 73094776 73094846 -144942312 - MIR SINE MIR -130 132 63 428 345 114 0 chr3 73095071 73095291 -144941867 + MIR SINE MIR 4 248 -14 229 318 100 0 chr3 73095349 73095459 -144941699 + MIR SINE MIR 94 214 -48 1163 155 11 0 chr3 73095607 73095794 -144941364 + AluJo SINE Alu 123 311 -1 669 271 30 23 chr3 73096239 73096505 -144940653 + MER20B DNA MER1_type 26 293 -490 335 340 121 58 chr3 73098561 73098976 -144938182 - L2 LINE L2 -1 3271 2831 364 240 194 10 chr3 73099385 73099521 -144937637 + MIR SINE MIR 34 192 -70 345 232 48 27 chr3 73099532 73099677 -144937481 - MIR SINE MIR -65 143 16 355 139 13 51 chr3 73099828 73099907 -144937251 + L1MB7 LINE L1 6109 6184 0 275 267 11 22 chr3 73101081 73101171 -144935987 + MIR SINE MIR 95 183 -79 194 233 0 0 chr3 73101259 73101302 -144935856 + MIR SINE MIR 111 153 -109 357 358 95 0 chr3 73102356 73102546 -144934612 - MIR SINE MIR -10 252 45 216 0 0 0 chr3 73102661 73102685 -144934473 + (CA)n Simple_repeat Simple_repeat 1 24 0 255 364 56 0 chr3 73103122 73103265 -144933893 + L1ME2 LINE L1 5515 5665 -2143 2116 137 0 16 chr3 73103296 73103610 -144933548 - AluSx SINE Alu -3 309 1 195 42 0 0 chr3 73103996 73104020 -144933138 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2170 232 35 43 chr3 73104696 73105415 -144931743 + L1ME1 LINE L1 5314 6026 -140 1904 151 10 0 chr3 73105622 73105913 -144931245 - AluSx SINE Alu -18 294 1 328 268 21 0 chr3 73105925 73106022 -144931136 + L1ME2 LINE L1 6052 6150 -14 678 247 67 40 chr3 73106141 73106383 -144930775 + MIR SINE MIR 19 261 -1 234 262 33 0 chr3 73106622 73106683 -144930475 - L2 LINE L2 -4 3268 3206 1868 181 3 0 chr3 73107061 73107360 -144929798 - AluJo SINE Alu -8 304 5 1774 167 42 6 chr3 73107769 73108104 -144929054 + MER7A DNA MER2_type 1 345 -1 360 0 0 0 chr3 73108226 73108266 -144928892 + (T)n Simple_repeat Simple_repeat 1 40 0 2140 128 3 7 chr3 73108407 73108711 -144928447 - AluSx SINE Alu -9 303 1 22 56 0 0 chr3 73108722 73108758 -144928400 + AT_rich Low_complexity Low_complexity 1 36 0 271 203 25 13 chr3 73109817 73109896 -144927262 - MER116 DNA Mariner 0 80 1 194 267 122 11 chr3 73109931 73110021 -144927137 + MIR SINE MIR 1 100 -162 191 284 15 15 chr3 73110208 73110275 -144926883 + MIR SINE MIR 172 238 -24 277 257 20 69 chr3 73110298 73110399 -144926759 + MIR SINE MIR 96 191 -71 272 220 18 92 chr3 73111089 73111198 -144925960 + MER102a DNA MER1_type 227 327 -3 299 101 14 101 chr3 73112240 73112309 -144924849 + MER106A DNA MER1_type 1 63 -173 379 323 15 8 chr3 73112735 73112868 -144924290 + L2 LINE L2 3180 3313 0 390 298 44 32 chr3 73113221 73113379 -144923779 + MIR SINE MIR 79 238 -24 195 291 45 45 chr3 73113480 73113614 -144923544 - MIR SINE MIR -9 253 120 332 312 39 74 chr3 73114663 73114894 -144922264 + L2 LINE L2 2370 2592 -722 230 196 78 0 chr3 73114915 73114966 -144922192 - MER53 DNA DNA -133 56 2 205 267 8 108 chr3 73115081 73115201 -144921957 + L2 LINE L2 3147 3254 -59 195 293 93 13 chr3 73115301 73115376 -144921782 + MIR SINE MIR 61 141 -67 404 227 186 41 chr3 73115706 73115878 -144921280 - MER3 DNA MER1_type -8 201 5 2051 142 7 13 chr3 73116152 73116461 -144920697 - AluSx SINE Alu -5 307 1 1819 142 0 11 chr3 73116511 73116792 -144920366 - AluJb SINE Alu -33 279 2 822 271 15 5 chr3 73116835 73117038 -144920120 + MIR SINE MIR 20 224 -38 191 339 26 52 chr3 73117078 73117193 -144919965 + L2 LINE L2 3193 3304 -9 306 216 18 144 chr3 73117348 73117397 -144919761 + L1MC4a LINE L1 5741 5795 -2013 198 71 0 0 chr3 73117397 73117425 -144919733 + (TAGA)n Simple_repeat Simple_repeat 2 29 0 306 216 18 144 chr3 73117425 73117542 -144919616 + L1MC4a LINE L1 5795 5886 -1922 742 237 66 24 chr3 73117972 73118183 -144918975 - MIR SINE MIR -20 242 23 2244 100 3 7 chr3 73118384 73118694 -144918464 + AluSc SINE Alu 1 309 0 377 287 52 58 chr3 73118984 73119158 -144918000 + MIR SINE MIR 20 192 -70 602 271 62 50 chr3 73120132 73120471 -144916687 + L1MC4a LINE L1 5613 5955 -1853 21 0 0 0 chr3 73120612 73120633 -144916525 + AT_rich Low_complexity Low_complexity 1 21 0 2424 43 0 0 chr3 73120638 73120916 -144916242 + AluY SINE Alu 22 299 -12 640 256 70 5 chr3 73122948 73123147 -144914011 + MIR SINE MIR 1 212 -50 215 222 0 0 chr3 73123243 73123288 -144913870 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 670 308 109 47 chr3 73123307 73123857 -144913301 - L2 LINE L2 -4 3309 2708 1780 177 7 7 chr3 73123857 73124162 -144912996 - AluJo SINE Alu -7 305 1 670 308 109 47 chr3 73124162 73124339 -144912819 - L2 LINE L2 -605 2708 2543 260 153 0 42 chr3 73124413 73124485 -144912673 - L1PA10 LINE L1 -99 6069 6001 695 171 64 32 chr3 73124488 73124664 -144912494 + L1PA10 LINE L1 5991 6167 -1 1330 266 50 50 chr3 73124694 73125232 -144911926 - L2 LINE L2 -777 2537 2000 722 239 49 53 chr3 73126294 73126541 -144910617 - MIR SINE MIR 0 262 17 877 201 55 5 chr3 73126541 73126740 -144910418 + MER3 DNA MER1_type 1 209 0 2016 93 96 0 chr3 73127195 73127465 -144909693 + AluY SINE Alu 1 296 -15 1906 119 87 0 chr3 73129026 73129303 -144907855 + AluSg1 SINE Alu 1 301 -8 2001 228 98 19 chr3 73129337 73129987 -144907171 + L1ME1 LINE L1 5442 6143 -23 593 249 102 12 chr3 73129987 73130232 -144906926 + MER113 DNA MER1_type? 125 391 -130 345 183 0 0 chr3 73130232 73130292 -144906866 - MLT1A1 LTR MaLR 0 374 315 561 200 0 0 chr3 73130314 73130409 -144906749 + FLAM_A SINE Alu 12 106 -36 560 254 65 22 chr3 73130411 73130596 -144906562 - MLT1A1 LTR MaLR -125 240 48 260 283 61 77 chr3 73131950 73132140 -144905018 + MIR3 SINE MIR 14 197 -59 754 201 45 0 chr3 73132226 73132380 -144904778 - MIR SINE MIR -55 207 47 21 0 0 0 chr3 73133264 73133285 -144903873 + AT_rich Low_complexity Low_complexity 1 21 0 1123 172 10 20 chr3 73133302 73133505 -144903653 + AluJb SINE Alu 68 268 -44 279 0 0 0 chr3 73133510 73133541 -144903617 + (TAA)n Simple_repeat Simple_repeat 2 32 0 640 251 0 0 chr3 73133541 73133712 -144903446 + L1MB7 LINE L1 6005 6175 -9 806 254 66 0 chr3 73133990 73134187 -144902971 + MIR SINE MIR 32 241 -21 181 233 23 0 chr3 73135277 73135320 -144901838 + MIR SINE MIR 160 203 -59 2491 67 0 3 chr3 73135994 73136306 -144900852 + AluY SINE Alu 1 311 0 40755 34 22 1 chr3 73137165 73143187 -144893971 + L1PA2 LINE L1 2 6149 -6 635 216 0 9 chr3 73143929 73144045 -144893113 + FLAM_A SINE Alu 1 115 -18 2119 112 3 0 chr3 73144061 73144347 -144892811 - AluSc SINE Alu -22 287 1 326 302 91 52 chr3 73144443 73144589 -144892569 - MIR SINE MIR -15 247 87 2789 7 0 3 chr3 73144589 73144898 -144892260 - AluYa5 SINE Alu -3 308 1 326 302 91 52 chr3 73144898 73144983 -144892175 - MIR SINE MIR -175 87 7 619 298 38 72 chr3 73144996 73145288 -144891870 + L2 LINE L2 2863 3144 -169 417 238 260 17 chr3 73145289 73145520 -144891638 + LTR50 LTR ERVL 3 289 -506 486 278 39 0 chr3 73145561 73145741 -144891417 + LTR50 LTR ERVL 496 682 -113 297 221 15 0 chr3 73145742 73145810 -144891348 + LTR33A LTR ERVL 443 511 -12 394 257 22 15 chr3 73147213 73147349 -144889809 + MER103 DNA DNA 10 146 -20 195 293 12 24 chr3 73147588 73147670 -144889488 + L2 LINE L2 2703 2783 -531 235 312 20 111 chr3 73147969 73148168 -144888990 + L2 LINE L2 3006 3186 -86 216 216 0 39 chr3 73148461 73148512 -144888646 + GA-rich Low_complexity Low_complexity 4 52 0 240 213 11 21 chr3 73149076 73149170 -144887988 + GA-rich Low_complexity Low_complexity 1 93 0 2020 117 26 58 chr3 73152350 73152496 -144884662 + AluSx SINE Alu 1 133 -179 2260 98 3 25 chr3 73152496 73152814 -144884344 + AluY SINE Alu 1 311 0 2020 117 26 58 chr3 73152814 73152976 -144884182 + AluSx SINE Alu 133 299 -13 348 308 25 31 chr3 73153574 73153733 -144883425 + MIR SINE MIR 94 251 -11 1592 210 3 3 chr3 73153815 73154101 -144883057 + AluJo SINE Alu 1 286 -26 25 31 0 0 chr3 73154162 73154194 -144882964 + AT_rich Low_complexity Low_complexity 1 32 0 2226 169 57 53 chr3 73154245 73154788 -144882370 - L1MB5 LINE L1 -1 6173 5629 203 226 39 0 chr3 73154798 73154900 -144882258 + (TA)n Simple_repeat Simple_repeat 1 106 0 1337 164 13 17 chr3 73155418 73155656 -144881502 + AluJo SINE Alu 38 274 -38 398 20 20 0 chr3 73155662 73155713 -144881445 + (TG)n Simple_repeat Simple_repeat 2 53 0 302 307 23 0 chr3 73155715 73155803 -144881355 - L1MC4 LINE L1 -1339 6703 6614 * 305 299 23 0 chr3 73155783 73155870 -144881288 + L1MC4 LINE L1 6614 6702 -1340 * 321 298 0 0 chr3 73155808 73155892 -144881266 - L1MC4 LINE L1 -1344 6698 6615 348 284 164 38 chr3 73155942 73156125 -144881033 + MIR SINE MIR 28 233 -29 426 281 35 53 chr3 73156234 73156405 -144880753 + L2 LINE L2 2176 2343 -971 364 204 71 0 chr3 73156416 73156514 -144880644 + L1MD3 LINE L1 7881 7985 -10 22 0 0 0 chr3 73156514 73156536 -144880622 + AT_rich Low_complexity Low_complexity 1 22 0 847 275 20 25 chr3 73156719 73156963 -144880195 + MIR SINE MIR 6 248 -14 488 313 144 61 chr3 73157005 73157401 -144879757 + L2 LINE L2 2523 2951 -363 616 325 52 37 chr3 73157401 73157804 -144879354 + MLT1J LTR MaLR 1 409 -102 200 281 37 24 chr3 73157869 73157951 -144879207 + L2 LINE L2 2949 3031 -282 252 354 40 0 chr3 73158281 73158380 -144878778 - L2 LINE L2 -16 3256 3154 506 196 40 98 chr3 73159013 73159186 -144877972 + MLT1F1 LTR MaLR 350 512 -55 1711 164 3 31 chr3 73159263 73159555 -144877603 + AluJo SINE Alu 14 297 -15 180 173 0 115 chr3 73159699 73159751 -144877407 + MIR SINE MIR 216 261 -1 246 250 28 28 chr3 73160370 73160442 -144876716 + MIR3 SINE MIR 119 190 -18 838 281 66 41 chr3 73161657 73162049 -144875109 + MLT1K LTR MaLR 133 534 -54 2022 112 3 56 chr3 73162892 73163214 -144873944 + AluSq SINE Alu 8 312 -1 1408 163 40 99 chr3 73164473 73164896 -144872262 + L1MD3 LINE L1 7596 7993 -2 326 220 46 46 chr3 73164909 73165018 -144872140 - L2 LINE L2 0 3313 3205 1763 140 30 10 chr3 73165310 73165610 -144871548 + AluJb SINE Alu 1 306 -6 594 344 136 32 chr3 73166196 73166805 -144870353 + L2 LINE L2 2376 3063 -209 1325 226 154 60 chr3 73166820 73167322 -144869836 + MLT1F LTR MaLR 13 565 -2 509 150 0 50 chr3 73168146 73168246 -144868912 + FLAM_A SINE Alu 45 139 -3 315 250 26 13 chr3 73168439 73168515 -144868643 + MER5A DNA MER1_type 66 142 -47 22 70 0 0 chr3 73169191 73169234 -144867924 + AT_rich Low_complexity Low_complexity 1 43 0 592 313 30 35 chr3 73169283 73169488 -144867670 - MIR SINE MIR -8 254 49 1731 176 7 3 chr3 73169488 73169789 -144867369 + AluJb SINE Alu 1 302 -10 592 313 30 35 chr3 73169789 73169813 -144867345 - MIR SINE MIR -213 49 26 812 109 117 0 chr3 73170041 73170178 -144866980 + L1MA2 LINE L1 6152 6304 0 278 316 21 11 chr3 73171333 73171428 -144865730 - MIR3 SINE MIR -7 201 106 1513 135 33 99 chr3 73171597 73171960 -144865198 + MER44D DNA MER2_type 1 609 0 455 264 104 0 chr3 73171991 73172026 -144865132 - MER104 DNA MER2_type -1718 180 150 422 270 0 0 chr3 73172026 73172141 -144865017 - MER104 DNA Tc2 -51 129 15 455 264 104 0 chr3 73172141 73172154 -144865004 - MER104 DNA MER2_type -1748 150 1 839 213 0 0 chr3 73172220 73172375 -144864783 - FRAM SINE Alu -10 166 12 28 0 0 0 chr3 73172941 73172969 -144864189 + AT_rich Low_complexity Low_complexity 1 28 0 1049 244 94 23 chr3 73173065 73173373 -144863785 + MLT1F LTR MaLR 9 338 -204 428 301 20 14 chr3 73173382 73173528 -144863630 + MIR SINE MIR 37 183 -79 214 238 0 0 chr3 73173677 73173719 -144863439 + MIR SINE MIR 215 256 -6 186 43 0 0 chr3 73174311 73174334 -144862824 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2382 102 0 0 chr3 73175308 73175612 -144861546 + AluSx SINE Alu 1 304 -8 2233 100 10 0 chr3 73175715 73176006 -144861152 + AluSg SINE Alu 9 302 -8 243 0 0 0 chr3 73176349 73176376 -144860782 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 508 118 0 0 chr3 73176551 73176627 -144860531 - AluS SINE Alu -235 76 1 21 0 0 0 chr3 73177173 73177194 -144859964 + AT_rich Low_complexity Low_complexity 1 21 0 2061 148 3 0 chr3 73177285 73177590 -144859568 + AluSx SINE Alu 1 306 -6 21 0 0 0 chr3 73178008 73178029 -144859129 + AT_rich Low_complexity Low_complexity 1 21 0 194 267 67 0 chr3 73178334 73178394 -144858764 - L2 LINE L2 0 3272 3209 298 259 12 25 chr3 73178673 73178754 -144858404 + Charlie8 DNA MER1_type 10 89 -2328 2382 144 44 0 chr3 73178765 73179194 -144857964 + L1MB3 LINE L1 5734 6181 -2 1782 158 21 14 chr3 73179328 73179619 -144857539 + AluJo SINE Alu 4 296 -16 1934 169 3 0 chr3 73179784 73180132 -144857026 - AluSx SINE Alu 0 312 1 567 228 5 69 chr3 73180300 73180489 -144856669 + L1MC5 LINE L1 7721 7897 -64 260 327 160 0 chr3 73181423 73181573 -144855585 + L3 LINE CR1 519 692 -885 371 325 80 11 chr3 73181874 73182062 -144855096 - MIR SINE MIR -16 246 46 252 319 53 0 chr3 73182254 73182348 -144854810 + L3 LINE CR1 1440 1538 -39 182 299 86 26 chr3 73182420 73182537 -144854621 - MIR SINE MIR -56 206 83 1525 237 12 68 chr3 73182967 73183553 -144853605 + L1ME1 LINE L1 3672 4224 -1922 600 143 91 97 chr3 73183584 73183759 -144853399 + MER58B DNA MER1_type 168 341 0 577 124 0 172 chr3 73183906 73184075 -144853083 - L1PA15 LINE L1 0 6165 6026 2592 230 81 37 chr3 73184098 73185811 -144851347 + L1ME1 LINE L1 4382 6161 -5 194 356 0 78 chr3 73186395 73186510 -144850648 + L2 LINE L2 3004 3109 -163 193 295 192 0 chr3 73186546 73186624 -144850534 + MIR SINE MIR 110 202 -60 421 283 80 0 chr3 73186628 73186741 -144850417 + L2 LINE L2 3188 3309 -4 1276 201 121 21 chr3 73186914 73187293 -144849865 - MER96B DNA MER1_type 0 417 1 203 158 0 0 chr3 73187654 73187692 -144849466 + CT-rich Low_complexity Low_complexity 1 38 0 1873 152 0 3 chr3 73188368 73188651 -144848507 + AluSx SINE Alu 1 282 -30 336 24 0 0 chr3 73188654 73188695 -144848463 + (GA)n Simple_repeat Simple_repeat 2 42 0 227 287 140 28 chr3 73188881 73189024 -144848134 - MIR3 SINE MIR -9 199 41 2205 104 0 3 chr3 73189294 73189593 -144847565 + AluSq SINE Alu 1 298 -15 265 211 0 0 chr3 73189729 73189781 -144847377 + L2 LINE L2 3201 3252 -61 940 281 36 116 chr3 73190571 73191693 -144845465 + L2 LINE L2 2285 3304 -9 195 274 20 0 chr3 73191778 73191829 -144845329 + MIR3 SINE MIR 133 184 -24 432 233 67 17 chr3 73191870 73191990 -144845168 + L2 LINE L2 3186 3311 -2 1032 194 102 10 chr3 73192643 73192937 -144844221 - MER33 DNA MER1_type 0 324 4 180 0 0 0 chr3 73193818 73193838 -144843320 + (A)n Simple_repeat Simple_repeat 1 20 0 345 315 35 28 chr3 73194558 73194701 -144842457 - L2 LINE L2 0 3272 3129 562 276 128 5 chr3 73194738 73194941 -144842217 - MIR SINE MIR 0 262 35 1633 232 35 108 chr3 73195056 73195656 -144841502 + L1MC4 LINE L1 5302 5817 -2225 1680 181 3 7 chr3 73195656 73195949 -144841209 + AluJb SINE Alu 1 292 -20 1633 232 35 108 chr3 73195949 73196240 -144840918 + L1MC4 LINE L1 5817 6128 -1914 1663 113 88 3 chr3 73196894 73197178 -144839980 - MER47A DNA MER2_type 0 366 59 2017 149 10 3 chr3 73197202 73197511 -144839647 - AluJb SINE Alu -1 311 1 291 289 35 26 chr3 73198288 73198402 -144838756 + MIR3 SINE MIR 93 207 -1 430 312 88 8 chr3 73198428 73198553 -144838605 + L2 LINE L2 3136 3270 -2 767 259 27 27 chr3 73199319 73199543 -144837615 - MER58A DNA MER1_type 0 224 1 473 324 83 74 chr3 73199734 73200070 -144837088 + L2 LINE L2 2898 3236 -36 381 295 51 15 chr3 73200621 73200834 -144836324 + L1MC/D LINE L1 5514 5731 -421 1404 274 60 62 chr3 73200919 73201902 -144835256 + L2 LINE L2 2332 3313 0 418 204 39 39 chr3 73202751 73202854 -144834304 + L2 LINE L2 3195 3297 -16 242 231 58 0 chr3 73203530 73203582 -144833576 - L2 LINE L2 -1 3312 3258 441 308 173 9 chr3 73209316 73209530 -144827628 + MIR SINE MIR 14 262 0 669 282 49 25 chr3 73210701 73210946 -144826212 + MIR SINE MIR 2 252 -10 332 331 44 6 chr3 73211236 73211396 -144825762 + L1M4 LINE L1 2957 3122 -3024 3468 186 94 13 chr3 73211397 73212564 -144824594 + L1MB8 LINE L1 4903 6172 -6 587 270 80 96 chr3 73212566 73213069 -144824089 + L1M4 LINE L1 3110 3601 -2545 1143 190 62 86 chr3 73213525 73213899 -144823259 - MLT1A1 LTR MaLR 0 365 1 21 57 0 0 chr3 73214190 73214225 -144822933 + AT_rich Low_complexity Low_complexity 1 35 0 526 303 84 0 chr3 73215903 73216081 -144821077 - MIR SINE MIR -18 244 52 531 191 0 26 chr3 73216414 73216529 -144820629 - AluSg/x SINE Alu -44 268 157 1932 139 3 7 chr3 73216586 73216874 -144820284 - AluSx SINE Alu -25 287 1 925 151 7 0 chr3 73216874 73217013 -144820145 - AluJb SINE Alu -172 140 1 206 222 0 19 chr3 73217454 73217508 -144819650 + (CACCAT)n Simple_repeat Simple_repeat 5 57 0 280 219 272 35 chr3 73217517 73217631 -144819527 - MIR SINE MIR -12 250 110 314 295 132 8 chr3 73218033 73218162 -144818996 - MIR SINE MIR -70 192 48 2675 216 75 38 chr3 73218179 73218215 -144818943 + L1ME3 LINE L1 5299 5332 -830 2166 107 24 0 chr3 73218215 73218513 -144818645 + AluSq SINE Alu 1 305 -8 2675 216 75 38 chr3 73218513 73219307 -144817851 + L1ME3 LINE L1 5332 6141 -21 2042 143 0 3 chr3 73219332 73219625 -144817533 - AluSx SINE Alu -11 301 10 1672 187 33 0 chr3 73219628 73219927 -144817231 - AluJo SINE Alu 0 312 4 2296 67 3 3 chr3 73269958 73270242 -144766916 - AluY SINE Alu -25 286 3 1534 134 50 103 chr3 73270472 73270793 -144766365 + AluSx SINE Alu 1 304 -8 539 327 110 39 chr3 73270968 73271378 -144765780 - MLT1K LTR MaLR -146 442 4 193 255 21 0 chr3 73272120 73272167 -144764991 - MIR SINE MIR -136 126 79 2065 118 13 0 chr3 73272440 73272719 -144764439 + AluSx SINE Alu 1 282 -30 191 70 0 47 chr3 73272719 73272762 -144764396 + (CAAAA)n Simple_repeat Simple_repeat 1 180 0 218 368 26 0 chr3 73273063 73273139 -144764019 + MIR SINE MIR 50 127 -135 509 82 14 0 chr3 73273139 73273212 -144763946 - MSTC LTR MaLR 0 428 355 1556 170 3 48 chr3 73273216 73273510 -144763648 + AluJo SINE Alu 1 281 -31 731 178 37 0 chr3 73273531 73273666 -144763492 - MSTC LTR MaLR -58 370 231 401 245 82 34 chr3 73274034 73274181 -144762977 - MER5C DNA MER1_type -170 154 1 283 298 97 0 chr3 73274344 73274458 -144762700 - L2 LINE L2 -5 3267 3143 904 234 19 23 chr3 73274459 73274673 -144762485 - MER20 DNA MER1_type -6 213 1 448 256 75 0 chr3 73275142 73275275 -144761883 - MIR SINE MIR -30 232 90 1834 228 6 3 chr3 73275344 73275695 -144761463 - MER82 DNA MER2_type -1 652 301 590 141 10 10 chr3 73275943 73276042 -144761116 - MER82 DNA MER2_type -359 294 196 241 254 53 26 chr3 73276047 73276161 -144760997 + Tigger7 DNA MER2_type 499 615 -1872 592 284 23 28 chr3 73276672 73276848 -144760310 - MLT1K LTR MaLR -313 275 101 333 250 10 10 chr3 73278181 73278277 -144758881 + L1MC4 LINE L1 6617 6712 -1330 326 255 82 36 chr3 73278300 73278496 -144758662 - L1ME4a LINE L1 -158 5963 5759 2096 138 0 3 chr3 73278496 73278794 -144758364 - AluJb SINE Alu -15 297 1 539 278 0 8 chr3 73279011 73279137 -144758021 + L2 LINE L2 3189 3313 0 326 316 101 10 chr3 73279977 73280198 -144756960 - MIR SINE MIR -15 247 7 3193 133 0 87 chr3 73280489 73281053 -144756105 - MLT2B2 LTR ERVL 0 515 1 2503 53 7 7 chr3 73281153 73281453 -144755705 - AluY SINE Alu -10 301 2 369 145 0 0 chr3 73281470 73281532 -144755626 + (TGGA)n Simple_repeat Simple_repeat 4 65 0 228 288 88 0 chr3 73281601 73281681 -144755477 - L2 LINE L2 0 3313 3227 234 393 28 0 chr3 73281876 73281983 -144755175 - L2 LINE L2 -562 2752 2643 792 160 0 0 chr3 73282296 73282415 -144754743 - Tigger1 DNA MER2_type 0 2418 2300 284 98 0 0 chr3 73282422 73282463 -144754695 - AluYa5 SINE Alu -103 198 158 331 330 0 10 chr3 73282617 73282717 -144754441 - L2 LINE L2 0 3272 3174 370 300 33 25 chr3 73282717 73282837 -144754321 - L2 LINE L2 -15 3257 3137 396 281 118 20 chr3 73282951 73283104 -144754054 + MIR SINE MIR 94 261 -1 1587 233 75 25 chr3 73283138 73283581 -144753577 + LTR40c LTR ERVL 1 465 0 192 371 0 0 chr3 73285645 73285707 -144751451 - L2 LINE L2 -7 3306 3245 1077 204 30 17 chr3 73285847 73286077 -144751081 + MLT1D LTR MaLR 1 233 -272 6721 125 23 13 chr3 73286315 73287364 -144749794 - Tigger1 DNA MER2_type -1359 1059 1 467 332 17 38 chr3 73287564 73287802 -144749356 - MIR SINE MIR -27 235 3 2344 81 0 0 chr3 73288482 73288777 -144748381 - AluY SINE Alu -16 295 1 209 385 39 17 chr3 73289717 73289896 -144747262 + MIR SINE MIR 23 205 -57 2316 90 0 19 chr3 73290729 73291039 -144746119 + AluSx SINE Alu 1 304 -8 21 0 0 0 chr3 73291154 73291175 -144745983 + AT_rich Low_complexity Low_complexity 1 21 0 330 111 0 0 chr3 73291696 73291741 -144745417 + L2 LINE L2 3227 3271 -1 263 271 14 0 chr3 73292023 73292093 -144745065 + L1ME4a LINE L1 5982 6052 -69 1440 220 26 10 chr3 73292105 73292418 -144744740 - L1MB4 LINE L1 -16 6164 5847 1759 171 3 23 chr3 73293028 73293333 -144743825 - AluJb SINE Alu -13 299 1 2209 119 0 0 chr3 73293343 73293637 -144743521 - AluSg SINE Alu -16 294 1 852 179 79 104 chr3 73294013 73294272 -144742886 + Charlie1 DNA MER1_type 2452 2703 -58 971 176 53 5 chr3 73294272 73294459 -144742699 + L1MC2 LINE L1 6136 6331 -13 852 179 79 104 chr3 73294459 73294517 -144742641 + Charlie1 DNA MER1_type 2703 2761 0 207 221 29 44 chr3 73295228 73295296 -144741862 - L2 LINE L2 -1 3312 3246 2366 94 0 7 chr3 73296014 73296323 -144740835 + L1PB1 LINE L1 5842 6148 -3 181 158 53 88 chr3 73297343 73297400 -144739758 + MER5B DNA MER1_type 122 176 -2 418 275 75 19 chr3 73297587 73297747 -144739411 + MIR SINE MIR 94 262 0 1674 172 0 20 chr3 73298553 73298856 -144738302 - AluJb SINE Alu -7 305 9 436 271 93 20 chr3 73298885 73299036 -144738122 + MIR SINE MIR 51 212 -50 1941 155 116 42 chr3 73299256 73299688 -144737470 + MER31B LTR ERV1 3 466 0 630 311 5 41 chr3 73299955 73300070 -144737088 - MIR SINE MIR -50 212 107 1841 84 92 4 chr3 73300070 73300331 -144736827 + AluSx SINE Alu 17 300 -12 630 311 5 41 chr3 73300331 73300434 -144736724 - MIR SINE MIR -155 107 2 1266 132 29 19 chr3 73301554 73301759 -144735399 - AluSg/x SINE Alu -1 311 105 195 302 72 36 chr3 73302629 73302768 -144734390 + L2 LINE L2 2898 3041 -231 241 294 22 0 chr3 73302981 73303073 -144734085 + MER117 DNA MER1_type 60 153 -44 751 294 152 42 chr3 73303139 73303720 -144733438 + L2 LINE L2 2668 3313 0 22 0 0 0 chr3 73303735 73303757 -144733401 + AT_rich Low_complexity Low_complexity 1 22 0 183 42 0 0 chr3 73303878 73303902 -144733256 + (TAAAA)n Simple_repeat Simple_repeat 4 27 0 727 162 64 147 chr3 73304008 73304072 -144733086 + MER5A DNA MER1_type 2 70 -119 19975 32 0 0 chr3 73304072 73307096 -144730062 + L1PA2 LINE L1 3134 6155 0 727 162 64 147 chr3 73307096 73307235 -144729923 + MER5A DNA MER1_type 70 188 -1 2043 111 0 28 chr3 73307367 73307678 -144729480 + AluSg SINE Alu 1 303 0 289 281 99 16 chr3 73308299 73308420 -144728738 - MIR SINE MIR -27 235 105 2270 103 0 3 chr3 73308466 73308758 -144728400 - AluSx SINE Alu -21 291 1 24 0 0 0 chr3 73309269 73309293 -144727865 + AT_rich Low_complexity Low_complexity 1 24 0 383 349 103 35 chr3 73309789 73310130 -144727028 + L2 LINE L2 2873 3236 -36 459 289 82 16 chr3 73310718 73310912 -144726246 + L2 LINE L2 2148 2354 -960 184 200 0 0 chr3 73310908 73310943 -144726215 - MIR SINE MIR -161 101 67 * 385 136 0 0 chr3 73312720 73312779 -144724379 + L1MB5 LINE L1 6110 6168 -6 207 280 93 37 chr3 73313713 73313820 -144723338 - L2 LINE L2 0 3313 3201 213 371 78 39 chr3 73313941 73314173 -144722985 - L2 LINE L2 -338 2976 2736 297 105 0 0 chr3 73314616 73314654 -144722504 + Alu SINE Alu 5 42 -266 1526 174 34 27 chr3 73314699 73314993 -144722165 + AluJb SINE Alu 8 303 -9 202 269 9 9 chr3 73315888 73315996 -144721162 + GA-rich Low_complexity Low_complexity 1 108 0 232 314 105 0 chr3 73317591 73317677 -144719481 - MIR3 SINE MIR -111 97 3 381 318 0 39 chr3 73317958 73318112 -144719046 - L2 LINE L2 -5 3308 3161 2120 177 13 25 chr3 73318370 73318765 -144718393 + MLT1B LTR MaLR 1 390 0 855 202 192 69 chr3 73318935 73319360 -144717798 + MLT1G3 LTR MaLR 1 488 -54 1651 160 4 0 chr3 73319360 73319637 -144717521 - AluSx SINE Alu 0 314 37 855 202 192 69 chr3 73319637 73319692 -144717466 + MLT1G3 LTR MaLR 488 535 -7 1663 165 7 21 chr3 73321124 73321409 -144715749 - AluJo SINE Alu -31 281 1 341 42 0 21 chr3 73321438 73321486 -144715672 + (ATATG)n Simple_repeat Simple_repeat 2 48 0 664 220 0 57 chr3 73322547 73322688 -144714470 - FLAM_A SINE Alu 0 133 1 1850 195 41 52 chr3 73322942 73323491 -144713667 + L1MC1 LINE L1 4673 5227 -1106 1850 165 3 32 chr3 73323491 73323541 -144713617 + L1MC1 LINE L1 6005 6055 -278 2469 123 3 15 chr3 73323541 73323882 -144713276 - MER1B DNA MER1_type 0 337 1 1850 165 3 32 chr3 73323882 73324170 -144712988 + L1MC1 LINE L1 6055 6333 0 1850 195 41 52 chr3 73324170 73324346 -144712812 + L1MC1 LINE L1 5227 5403 -930 195 42 0 0 chr3 73324346 73324370 -144712788 + (TA)n Simple_repeat Simple_repeat 2 25 0 1850 195 41 52 chr3 73324370 73324584 -144712574 + L1MC1 LINE L1 5403 5618 -715 1578 159 23 40 chr3 73324584 73324885 -144712273 + AluJo SINE Alu 16 311 -1 1850 195 41 52 chr3 73324885 73325116 -144712042 + L1MC1 LINE L1 5618 6333 0 1521 224 49 31 chr3 73325115 73325388 -144711770 + L1MD2 LINE L1 5906 6191 -168 * 1658 189 0 50 chr3 73325388 73325706 -144711452 - AluJb SINE Alu -10 302 1 1521 224 49 31 chr3 73325706 73325857 -144711301 + L1MD2 LINE L1 6191 6338 -21 401 261 63 63 chr3 73325916 73326154 -144711004 + L1ME4a LINE L1 5874 6111 -10 204 67 0 0 chr3 73326974 73327004 -144710154 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 2019 99 0 4 chr3 73327016 73327279 -144709879 - AluSc SINE Alu -47 262 1 956 240 97 14 chr3 73327370 73327720 -144709438 + MER20B DNA MER1_type 168 546 -237 281 258 15 0 chr3 73327736 73327802 -144709356 + MER5A DNA MER1_type 9 75 -114 673 191 0 9 chr3 73327802 73327917 -144709241 + FLAM_A SINE Alu 2 115 -18 6228 214 87 70 chr3 73329467 73329889 -144707269 + L1MD1 LINE L1 850 1263 -5373 634 229 15 0 chr3 73329889 73330020 -144707138 + AluJb SINE Alu 175 307 -5 6228 214 87 70 chr3 73330020 73330152 -144707006 + L1MD1 LINE L1 1263 1391 -5245 2173 145 3 0 chr3 73330152 73330463 -144706695 + AluSx SINE Alu 1 312 0 6228 214 87 70 chr3 73330463 73333590 -144703568 + L1MD1 LINE L1 1391 4464 -2172 1201 163 228 4 chr3 73333590 73333727 -144703431 - AluJb SINE Alu -1 301 196 267 103 0 0 chr3 73333727 73333766 -144703392 + (TG)n Simple_repeat Simple_repeat 1 39 0 1201 163 228 4 chr3 73333766 73333874 -144703284 - AluJb SINE Alu -106 196 1 6228 214 87 70 chr3 73333874 73334546 -144702612 + L1MD1 LINE L1 4464 5123 -1513 1468 169 24 37 chr3 73334546 73334842 -144702316 + AluJo SINE Alu 19 310 -2 6228 214 87 70 chr3 73334842 73335420 -144701738 + L1MD1 LINE L1 5123 6020 -616 526 164 9 9 chr3 73335420 73335525 -144701633 + MSTD LTR MaLR 1 109 -265 632 210 16 0 chr3 73335627 73335751 -144701407 + MSTD LTR MaLR 271 396 0 945 158 246 0 chr3 73335751 73335966 -144701192 + L1MD1 LINE L1 6016 6283 -353 568 215 57 25 chr3 73335983 73336141 -144701017 + MLT1C LTR MaLR 305 467 0 380 259 200 7 chr3 73336141 73336276 -144700882 + MER5A DNA MER1_type 29 189 0 916 191 17 69 chr3 73337794 73338025 -144699133 - MER20B DNA MER1_type 0 219 1 212 377 184 6 chr3 73338603 73338919 -144698239 + L2 LINE L2 2449 2820 -494 273 203 16 0 chr3 73339423 73339487 -144697671 + L1ME4a LINE L1 5973 6037 -84 550 302 36 16 chr3 73341049 73341241 -144695917 - MIR SINE MIR -34 228 33 1938 126 66 0 chr3 73342162 73342448 -144694710 + AluSx SINE Alu 1 305 -7 794 248 23 33 chr3 73342500 73342714 -144694444 - MIR SINE MIR -8 254 43 865 110 0 22 chr3 73342758 73342894 -144694264 + FLAM_C SINE Alu 1 133 0 422 345 63 6 chr3 73343264 73343438 -144693720 + MIR SINE MIR 47 230 -32 579 238 140 6 chr3 73343962 73344126 -144693032 - MER5A DNA MER1_type 0 189 4 552 244 154 0 chr3 73344460 73344616 -144692542 - MIR SINE MIR -77 185 6 3099 145 10 0 chr3 73344762 73345260 -144691898 + MER41E LTR ERV1 1 503 -9 423 379 20 0 chr3 73345645 73345798 -144691360 - L2 LINE L2 0 3272 3117 386 326 23 0 chr3 73346939 73347071 -144690087 + MIR SINE MIR 15 149 -113 2540 77 0 0 chr3 73347181 73347492 -144689666 - AluY SINE Alu 0 311 1 818 203 18 0 chr3 73347773 73347936 -144689222 - MER58B DNA MER1_type -1 340 175 496 181 43 9 chr3 73348041 73348157 -144689001 - L1MA9 LINE L1 -38 6274 6155 1763 153 29 0 chr3 73348268 73348543 -144688615 - AluJb SINE Alu -13 299 17 539 246 8 0 chr3 73348865 73348987 -144688171 + MER94 DNA DNA 12 134 0 213 139 0 23 chr3 73349324 73349367 -144687791 + (TTTTTG)n Simple_repeat Simple_repeat 3 44 0 1733 177 3 20 chr3 73349863 73350163 -144686995 + AluJb SINE Alu 1 295 -17 428 306 41 0 chr3 73352005 73352126 -144685032 + L2 LINE L2 3188 3313 0 2536 117 3 8 chr3 73352132 73352509 -144684649 - THE1C LTR MaLR 0 375 1 546 314 51 0 chr3 73352711 73352867 -144684291 + MIR SINE MIR 3 166 -96 385 105 0 0 chr3 73354421 73354478 -144682680 + Tigger4(Zombi) DNA MER2_type 1 57 -2674 426 125 0 0 chr3 73354486 73354550 -144682608 + Tigger4(Zombi) DNA MER2_type 2668 2731 0 736 197 0 0 chr3 73354914 73355046 -144682112 - FLAM_A SINE Alu -1 132 1 447 332 93 26 chr3 73355640 73356036 -144681122 - L2 LINE L2 -263 3050 2631 21 0 0 0 chr3 73356237 73356258 -144680900 + AT_rich Low_complexity Low_complexity 1 21 0 675 267 100 40 chr3 73357679 73358226 -144678932 - MLT1L LTR MaLR -2 613 19 2097 148 0 16 chr3 73358888 73359205 -144677953 + AluJb SINE Alu 1 312 0 2300 74 22 32 chr3 73360566 73360877 -144676281 - AluSq SINE Alu -5 308 1 1736 166 13 22 chr3 73361690 73362004 -144675154 + AluJo SINE Alu 1 311 -1 714 125 0 0 chr3 73362004 73362116 -144675042 + (GA)n Simple_repeat Simple_repeat 1 112 0 791 188 56 0 chr3 73362502 73362662 -144674496 - MER82 DNA MER2_type -462 191 23 183 294 167 29 chr3 73362715 73362817 -144674341 - MER5B DNA MER1_type -62 116 1 432 222 24 60 chr3 73363443 73363610 -144673548 - MER103 DNA DNA 0 166 6 1789 164 27 0 chr3 73364544 73364837 -144672321 - AluJb SINE Alu -11 301 1 1040 247 16 24 chr3 73365009 73365260 -144671898 + MIR SINE MIR 1 249 -13 309 313 0 0 chr3 73365260 73365343 -144671815 - MER63A DNA MER1_type -1 209 127 247 88 0 0 chr3 73365356 73365390 -144671768 - MER63A DNA MER1_type -174 36 3 7915 107 24 38 chr3 73365404 73365528 -144671630 - HSMAR2 DNA Mariner -9 1293 1169 2157 104 44 0 chr3 73365528 73365825 -144671333 - AluSg SINE Alu 0 310 1 7915 107 24 38 chr3 73365825 73365901 -144671257 - HSMAR2 DNA Mariner -133 1169 1093 1763 108 0 20 chr3 73365901 73366151 -144671007 - AluSg1 SINE Alu -7 302 58 7915 107 24 38 chr3 73366151 73367259 -144669899 - HSMAR2 DNA Mariner -209 1093 2 280 217 12 12 chr3 73367259 73367342 -144669816 + (TA)n Simple_repeat Simple_repeat 2 84 0 733 256 104 13 chr3 73367998 73368228 -144668930 - MIR SINE MIR -1 261 11 726 199 48 100 chr3 73368232 73368463 -144668695 - MER20 DNA MER1_type 0 219 1 220 303 9 92 chr3 73368492 73368601 -144668557 + MER5B DNA MER1_type 7 106 -72 * 382 262 7 61 chr3 73368569 73368747 -144668411 + MIR SINE MIR 25 194 -14 414 184 202 0 chr3 73370534 73370648 -144666510 + MIR3 SINE MIR 61 197 -11 699 167 8 0 chr3 73370932 73371052 -144666106 + FLAM_A SINE Alu 1 121 -12 322 254 73 61 chr3 73373062 73373229 -144663929 + L1ME LINE L1 5685 5854 -308 315 322 37 23 chr3 73373557 73373771 -144663387 - L3b LINE CR1 -90 1493 1277 3746 63 2 0 chr3 73374861 73375307 -144661851 + L1PA7 LINE L1 5708 6154 0 22 56 0 0 chr3 73375311 73375347 -144661811 + AT_rich Low_complexity Low_complexity 1 36 0 857 73 9 0 chr3 73376441 73376550 -144660608 - AluSq/x SINE Alu -203 110 1 2044 125 25 0 chr3 73378665 73378946 -144658212 + AluSx SINE Alu 1 288 -24 1244 134 75 5 chr3 73379859 73380060 -144657098 + MER20 DNA MER1_type 1 215 -4 216 0 0 0 chr3 73380368 73380392 -144656766 + (A)n Simple_repeat Simple_repeat 1 24 0 184 380 22 22 chr3 73380393 73380485 -144656673 - MIR SINE MIR -79 129 38 293 202 298 18 chr3 73380596 73380710 -144656448 + MIR SINE MIR 99 244 -18 450 366 35 31 chr3 73381157 73381414 -144655744 + MIR SINE MIR 5 262 0 279 54 0 0 chr3 73381445 73381482 -144655676 + (TCC)n Simple_repeat Simple_repeat 3 39 0 190 340 0 0 chr3 73381486 73381539 -144655619 + L2 LINE L2 3210 3262 -10 603 249 11 72 chr3 73381570 73381682 -144655476 - MIR SINE MIR -91 171 73 1247 167 41 101 chr3 73381682 73381999 -144655159 - AluJo SINE Alu -14 298 1 603 249 11 72 chr3 73381999 73382067 -144655091 - MIR SINE MIR -189 73 2 772 261 15 5 chr3 73383954 73384149 -144653009 - MIR SINE MIR -19 243 47 1686 230 88 2 chr3 73384354 73384775 -144652383 + MER34 LTR ERV1 86 542 0 401 265 235 0 chr3 73384808 73384978 -144652180 - MIR SINE MIR -50 212 3 22 35 0 0 chr3 73385043 73385072 -144652086 + AT_rich Low_complexity Low_complexity 1 29 0 2032 144 0 3 chr3 73385083 73385395 -144651763 + AluJb SINE Alu 1 311 -1 344 338 51 25 chr3 73386720 73386877 -144650281 - MIR SINE MIR -70 192 32 292 314 29 0 chr3 73386909 73387014 -144650144 + L3 LINE CR1 1412 1519 -58 389 263 89 68 chr3 73387540 73387730 -144649428 + L3 LINE CR1 980 1173 -404 785 124 0 0 chr3 73387750 73387855 -144649303 - AluSp SINE Alu -207 106 2 2202 109 3 0 chr3 73387900 73388184 -144648974 + AluSx SINE Alu 1 285 -27 302 300 33 58 chr3 73388206 73388326 -144648832 + MIR SINE MIR 19 135 -73 883 152 8 0 chr3 73388616 73388748 -144648410 + AluSq/x SINE Alu 1 133 -179 21 0 0 0 chr3 73388757 73388778 -144648380 + AT_rich Low_complexity Low_complexity 1 21 0 1734 197 120 16 chr3 73388908 73389359 -144647799 + LTR54B LTR ERV1 1 498 0 2121 141 0 0 chr3 73389430 73389727 -144647431 + AluSx SINE Alu 1 297 -15 968 182 29 0 chr3 73390633 73390803 -144646355 + FRAM SINE Alu 1 173 -3 2007 117 3 14 chr3 73391973 73392281 -144644877 - AluSc SINE Alu 0 306 2 2076 114 0 38 chr3 73392311 73392626 -144644532 + AluSx SINE Alu 1 303 -9 2212 104 17 0 chr3 73393213 73393511 -144643647 + AluSg SINE Alu 1 303 -7 406 250 8 39 chr3 73394323 73394451 -144642707 + MIR SINE MIR 121 244 -18 1899 174 0 0 chr3 73394543 73394842 -144642316 + AluJb SINE Alu 1 299 -13 24 0 0 0 chr3 73395397 73395421 -144641737 + AT_rich Low_complexity Low_complexity 1 24 0 416 311 148 0 chr3 73396148 73396331 -144640827 + MIR SINE MIR 53 262 0 1664 183 3 13 chr3 73396457 73396757 -144640401 + AluJo SINE Alu 1 297 -15 225 0 0 0 chr3 73396797 73396822 -144640336 + (A)n Simple_repeat Simple_repeat 1 25 0 1656 200 3 7 chr3 73396952 73397252 -144639906 + AluJb SINE Alu 1 299 -13 21 0 0 0 chr3 73397771 73397792 -144639366 + AT_rich Low_complexity Low_complexity 1 21 0 205 171 0 0 chr3 73398304 73398339 -144638819 + L2 LINE L2 3213 3247 -25 708 253 11 0 chr3 73398505 73398679 -144638479 + MIR SINE MIR 73 248 -14 975 177 0 23 chr3 73398792 73398967 -144638191 + AluJb SINE Alu 142 312 0 237 321 45 15 chr3 73399073 73399207 -144637951 + MIR SINE MIR 110 247 -15 2370 102 0 0 chr3 73399444 73399749 -144637409 + AluSq SINE Alu 1 305 -8 289 360 125 5 chr3 73399790 73399990 -144637168 - MIR SINE MIR -10 252 29 1035 187 27 53 chr3 73400149 73400374 -144636784 + MER20 DNA MER1_type 1 219 0 1648 175 0 4 chr3 73401346 73401620 -144635538 - AluJb SINE Alu -39 273 1 1773 148 79 0 chr3 73402234 73402511 -144634647 + AluSg SINE Alu 1 299 -11 547 88 50 0 chr3 73402725 73402805 -144634353 - L1PA10 LINE L1 -9 6159 6076 22 35 0 0 chr3 73402862 73402891 -144634267 + AT_rich Low_complexity Low_complexity 1 29 0 1317 172 242 24 chr3 73403409 73403822 -144633336 + MLT1D LTR MaLR 3 505 0 198 0 0 0 chr3 73403909 73403931 -144633227 + (A)n Simple_repeat Simple_repeat 1 22 0 200 266 223 0 chr3 73404034 73404128 -144633030 - MIR SINE MIR -1 261 147 3707 183 46 90 chr3 73404157 73404657 -144632501 + L1MB8 LINE L1 4998 5518 -660 771 189 8 0 chr3 73404657 73404789 -144632369 + AluJo/FLAM SINE Alu 1 133 -169 1811 145 0 24 chr3 73404790 73405087 -144632071 - AluJo SINE Alu -22 290 1 3707 183 46 90 chr3 73405087 73405128 -144632030 + L1MB8 LINE L1 5518 5559 -619 2226 113 0 0 chr3 73405128 73405419 -144631739 + AluSx SINE Alu 1 291 -21 3707 183 46 90 chr3 73405419 73405722 -144631436 + L1MB8 LINE L1 5559 5764 -414 2253 69 40 13 chr3 73405722 73406025 -144631133 + AluY SINE Alu 1 311 0 3707 183 46 90 chr3 73406025 73406422 -144630736 + L1MB8 LINE L1 5764 6177 -1 298 254 30 0 chr3 73406908 73406975 -144630183 + L2 LINE L2 3233 3301 -12 188 65 0 32 chr3 73406976 73407007 -144630151 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 1920 105 0 64 chr3 73407215 73407510 -144629648 - AluSx SINE Alu -12 300 25 1575 169 19 4 chr3 73407618 73407879 -144629279 - AluJb SINE Alu -47 265 1 2443 66 0 13 chr3 73407885 73408188 -144628970 - AluY SINE Alu -12 299 1 369 350 113 60 chr3 73408833 73409213 -144627945 - L2 LINE L2 -49 3223 2824 21 0 0 0 chr3 73409571 73409592 -144627566 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 73410146 73410167 -144626991 + AT_rich Low_complexity Low_complexity 1 21 0 1598 199 7 10 chr3 73410169 73410471 -144626687 + AluJo SINE Alu 1 301 -11 247 331 137 0 chr3 73410783 73410922 -144626236 - MIR3 SINE MIR -45 163 6 191 36 36 0 chr3 73411058 73411086 -144626072 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2134 122 10 13 chr3 73412071 73412375 -144624783 + AluSx SINE Alu 6 308 -4 382 212 15 0 chr3 73412591 73412657 -144624501 - MER2 DNA MER2_type 0 345 279 326 221 11 32 chr3 73412974 73413069 -144624089 + L1ME4a LINE L1 6026 6118 -3 706 196 108 21 chr3 73413210 73413305 -144623853 - Tigger7 DNA MER2_type 0 2487 2402 180 0 0 0 chr3 73413305 73413325 -144623833 + (CATA)n Simple_repeat Simple_repeat 2 21 0 706 196 108 21 chr3 73413325 73413423 -144623735 - Tigger7 DNA MER2_type -85 2402 2281 2004 116 29 0 chr3 73413456 73413733 -144623425 + AluSx SINE Alu 1 285 -27 1542 218 30 10 chr3 73413858 73414161 -144622997 - Tigger7 DNA MER2_type -2172 315 7 199 292 42 42 chr3 73414164 73414260 -144622898 + MER5A DNA MER1_type 88 183 -6 209 296 49 12 chr3 73414685 73414766 -144622392 - MIR3 SINE MIR 0 208 125 565 216 74 6 chr3 73415446 73415608 -144621550 + L1MD1 LINE L1 5121 5293 -853 1837 203 57 56 chr3 73416100 73416915 -144620243 + L1MD1 LINE L1 5281 6241 -1 396 0 0 0 chr3 73416969 73417013 -144620145 + (CA)n Simple_repeat Simple_repeat 2 45 0 2231 127 0 0 chr3 73417059 73417367 -144619791 + AluSx SINE Alu 5 312 0 1459 149 50 122 chr3 73417371 73417747 -144619411 - MLT2D LTR ERVL -65 349 1 21 82 0 0 chr3 73417895 73417944 -144619214 + AT_rich Low_complexity Low_complexity 1 49 0 891 240 18 14 chr3 73417991 73418212 -144618946 - MER58A DNA MER1_type -1 223 2 1577 191 27 3 chr3 73418728 73419022 -144618136 + AluJo SINE Alu 1 301 -11 2114 107 0 4 chr3 73419311 73419625 -144617533 + AluSc SINE Alu 1 313 0 4749 184 25 4 chr3 73419975 73420819 -144616339 + Tigger7 DNA MER2_type 1 862 -1625 999 147 0 18 chr3 73420815 73420978 -144616180 + Tigger7 DNA MER2_type 2326 2485 -2 * 21 0 0 0 chr3 73421055 73421076 -144616082 + AT_rich Low_complexity Low_complexity 1 21 0 783 252 44 31 chr3 73421289 73421515 -144615643 + MIR SINE MIR 27 255 -7 27 0 0 0 chr3 73421998 73422025 -144615133 + AT_rich Low_complexity Low_complexity 1 27 0 576 125 0 0 chr3 73422152 73422232 -144614926 - MADE1 DNA Mariner 0 80 1 1944 154 20 38 chr3 73423096 73423439 -144613719 + MER1B DNA MER1_type 1 337 0 254 250 44 0 chr3 73423451 73423519 -144613639 - L2 LINE L2 -1 3312 3242 232 318 9 56 chr3 73423917 73424024 -144613134 + L2 LINE L2 3171 3272 0 495 0 0 0 chr3 73424137 73424192 -144612966 + (TG)n Simple_repeat Simple_repeat 2 56 0 257 197 0 66 chr3 73424266 73424327 -144612831 - L1ME3A LINE L1 -83 6087 6031 350 169 17 0 chr3 73424820 73424843 -144612315 + L1PA13 LINE L1 5826 5847 -284 1901 114 4 0 chr3 73424843 73425105 -144612053 - L1PA13 LINE L1 -2 6161 5899 350 169 17 0 chr3 73425105 73425159 -144611999 + L1PA13 LINE L1 5847 5909 -222 263 279 29 0 chr3 73425660 73425832 -144611326 + (TA)n Simple_repeat Simple_repeat 2 178 0 813 184 12 12 chr3 73425835 73425998 -144611160 + MER57A LTR ERV1 1 163 -240 6698 81 4 0 chr3 73425998 73427411 -144609747 + L1PA10 LINE L1 4752 6167 -1 28 29 0 0 chr3 73427411 73427446 -144609712 + AT_rich Low_complexity Low_complexity 1 35 0 2200 120 0 0 chr3 73427449 73427740 -144609418 + AluSc SINE Alu 1 291 -18 1168 194 21 0 chr3 73427741 73427978 -144609180 + MER57A LTR ERV1 153 394 -9 371 138 69 11 chr3 73428070 73428157 -144609001 - MER20 DNA MER1_type -92 127 36 588 311 79 18 chr3 73428294 73428455 -144608703 - MIR SINE MIR -16 246 66 1500 219 11 35 chr3 73428455 73428829 -144608329 - MLT1A1 LTR MaLR 0 365 1 588 311 79 18 chr3 73428829 73428895 -144608263 - MIR SINE MIR -196 66 5 482 280 30 15 chr3 73429094 73429226 -144607932 - MIR SINE MIR -76 186 53 496 133 13 0 chr3 73429235 73429310 -144607848 + AluSx SINE Alu 1 76 -237 1939 91 84 0 chr3 73429311 73429585 -144607573 - AluSp SINE Alu -16 297 1 1584 133 4 4 chr3 73429585 73429826 -144607332 + AluSx SINE Alu 65 305 -5 222 37 0 0 chr3 73431255 73431278 -144605880 + (TC)n Simple_repeat Simple_repeat 1 50 0 222 37 0 0 chr3 73431278 73431305 -144605853 + (TC)n Simple_repeat Simple_repeat 1 27 0 258 288 17 0 chr3 73432210 73432269 -144604889 + L2 LINE L2 3202 3261 -11 180 158 0 0 chr3 73432973 73433011 -144604147 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 192 125 0 0 chr3 73433220 73433252 -144603906 + (TG)n Simple_repeat Simple_repeat 1 32 0 321 26 0 0 chr3 73433731 73433769 -144603389 + (TC)n Simple_repeat Simple_repeat 1 38 0 207 0 0 0 chr3 73433768 73433791 -144603367 + (CA)n Simple_repeat Simple_repeat 1 23 0 * 2451 78 3 3 chr3 73433999 73434305 -144602853 - AluSp SINE Alu -7 306 1 673 234 52 76 chr3 73434742 73435109 -144602049 + L1ME LINE L1 5411 5768 -353 236 299 28 28 chr3 73435533 73435640 -144601518 + MIR SINE MIR 129 235 -27 195 42 0 0 chr3 73435863 73435887 -144601271 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 30 83 0 0 chr3 73436939 73437011 -144600147 + AT_rich Low_complexity Low_complexity 1 72 0 557 299 57 0 chr3 73437011 73437188 -144599970 - MIR SINE MIR -14 248 62 367 208 170 75 chr3 73437327 73437486 -144599672 - MER5B DNA MER1_type -2 176 3 649 186 144 32 chr3 73437567 73437755 -144599403 + MER3 DNA MER1_type 1 209 0 22 0 0 0 chr3 73438662 73438684 -144598474 + AT_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chr3 73439339 73439365 -144597793 + (TG)n Simple_repeat Simple_repeat 2 27 0 329 310 70 0 chr3 73439570 73439670 -144597488 - L2 LINE L2 -5 3308 3202 1933 131 13 20 chr3 73440301 73440599 -144596559 + AluSg SINE Alu 3 298 -12 2394 100 0 0 chr3 73440892 73441193 -144595965 + AluSc SINE Alu 1 301 -8 532 312 56 20 chr3 73442077 73442327 -144594831 - MLT1K LTR MaLR -199 389 131 462 191 54 30 chr3 73443302 73443470 -144593688 + L1MC5 LINE L1 7323 7494 -467 1895 124 0 0 chr3 73443587 73443852 -144593306 + AluSx SINE Alu 47 311 -1 2227 128 15 25 chr3 73443855 73444260 -144592898 - MSTA LTR MaLR -27 401 1 396 228 99 61 chr3 73444261 73444524 -144592634 + L1MC5 LINE L1 7529 7801 -160 542 246 18 0 chr3 73444640 73444750 -144592408 + L2 LINE L2 3200 3311 -2 236 217 17 33 chr3 73445033 73445093 -144592065 - L2 LINE L2 -12 3301 3243 458 303 25 31 chr3 73445175 73445337 -144591821 + MIR SINE MIR 13 173 -89 878 230 58 5 chr3 73446648 73446839 -144590319 - MER63A DNA MER1_type 0 210 10 235 200 18 0 chr3 73446853 73446908 -144590250 + L1ME4a LINE L1 5743 5798 -323 2255 104 3 0 chr3 73447003 73447302 -144589856 + AluSg SINE Alu 1 300 -10 221 178 14 68 chr3 73447313 73447386 -144589772 + (TATATG)n Simple_repeat Simple_repeat 6 74 0 329 216 90 48 chr3 73447388 73447555 -144589603 + L1ME4a LINE L1 5936 6109 -12 1849 250 67 17 chr3 73449925 73450510 -144586648 + MLT1E2 LTR MaLR 13 626 0 1756 179 46 6 chr3 73450592 73450943 -144586215 + MLT1A1 LTR MaLR 1 365 0 233 222 0 0 chr3 73451609 73451654 -144585504 + GA-rich Low_complexity Low_complexity 4 48 0 247 223 39 155 chr3 73452264 73452367 -144584791 + MIR3 SINE MIR 66 156 -52 242 282 27 94 chr3 73454259 73454408 -144582750 - MIR SINE MIR -77 185 47 2165 118 0 3 chr3 73454418 73454714 -144582444 - AluSx SINE Alu -17 295 1 535 272 155 92 chr3 73455279 73455691 -144581467 - L2 LINE L2 -5 3308 2871 2476 225 16 8 chr3 73455691 73456537 -144580621 - L1MDa LINE L1 -3311 3229 2380 272 140 0 18 chr3 73457821 73457834 -144579324 + (GA)n Simple_repeat Simple_repeat 2 14 -43 1851 88 110 0 chr3 73457834 73458097 -144579061 + AluSg1 SINE Alu 1 292 -17 272 140 0 18 chr3 73458097 73458140 -144579018 + (GA)n Simple_repeat Simple_repeat 14 57 0 23 0 0 0 chr3 73458409 73458432 -144578726 + AT_rich Low_complexity Low_complexity 1 23 0 618 195 39 7 chr3 73459196 73459350 -144577808 - L1MD3 LINE L1 -8 7987 7829 349 155 42 0 chr3 73459350 73459421 -144577737 - L1MD2 LINE L1 -218 6141 6068 1141 117 0 12 chr3 73459437 73459600 -144577558 + AluSg/x SINE Alu 115 275 -37 230 0 0 32 chr3 73459600 73459631 -144577527 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 3387 181 91 4 chr3 73459631 73460386 -144576772 - L1MD2 LINE L1 -280 6079 5259 2030 150 85 15 chr3 73460399 73460799 -144576359 + Tigger3b DNA MER2_type 2 429 -802 908 229 110 6 chr3 73460799 73461144 -144576014 + L1M4 LINE L1 4862 5242 -904 4220 238 32 35 chr3 73461159 73462688 -144574470 - L1MD2 LINE L1 -1592 4554 3030 203 32 65 0 chr3 73462697 73462728 -144574430 + T-rich Low_complexity Low_complexity 2 34 0 2069 110 62 0 chr3 73462731 73463021 -144574137 - AluSg SINE Alu -2 308 1 2378 77 3 3 chr3 73463658 73463956 -144573202 - AluSp SINE Alu -15 298 1 998 240 87 89 chr3 73464310 73464840 -144572318 + MLT1F LTR MaLR 11 539 -3 2127 126 3 3 chr3 73466267 73466577 -144570581 + AluSg SINE Alu 1 310 0 377 302 83 24 chr3 73466654 73466823 -144570335 + MIR SINE MIR 72 250 -12 253 206 155 21 chr3 73467710 73467807 -144569351 + MIR SINE MIR 82 191 -71 653 272 58 12 chr3 73467943 73468116 -144569042 - MIR SINE MIR -80 182 2 180 0 0 0 chr3 73468272 73468292 -144568866 + (A)n Simple_repeat Simple_repeat 1 20 0 204 235 20 0 chr3 73468959 73469010 -144568148 + (TTCA)n Simple_repeat Simple_repeat 4 55 0 341 318 65 0 chr3 73469070 73469177 -144567981 - MIR SINE MIR -101 161 48 534 257 0 0 chr3 73469185 73469294 -144567864 + FLAM_A SINE Alu 2 110 -32 402 291 67 8 chr3 73469963 73470097 -144567061 + MIR SINE MIR 5 146 -116 248 271 123 33 chr3 73470129 73470251 -144566907 + MLT1I LTR MaLR 22 154 -255 2273 121 0 3 chr3 73470306 73470620 -144566538 - AluSq SINE Alu 0 313 1 348 85 0 64 chr3 73470764 73470858 -144566300 + (TA)n Simple_repeat Simple_repeat 2 89 0 205 263 150 0 chr3 73470919 73470999 -144566159 + MIR SINE MIR 159 250 -12 465 255 0 0 chr3 73471641 73471739 -144565419 - MER81 DNA DNA -16 98 1 2217 97 3 0 chr3 73472125 73472415 -144564743 + AluSq SINE Alu 6 296 -17 314 191 59 29 chr3 73472416 73472484 -144564674 + L2 LINE L2 3202 3271 -42 2210 113 0 0 chr3 73472763 73473054 -144564104 + AluSx SINE Alu 2 292 -20 700 202 6 55 chr3 73473491 73473587 -144563571 + MER5A DNA MER1_type 13 97 -92 183 42 0 0 chr3 73473587 73473611 -144563547 + (CA)n Simple_repeat Simple_repeat 2 25 0 700 202 6 55 chr3 73473611 73473697 -144563461 + MER5A DNA MER1_type 97 186 -3 490 250 96 6 chr3 73474187 73474343 -144562815 + L2 LINE L2 2478 2647 -667 777 275 154 46 chr3 73474380 73474751 -144562407 + L2 LINE L2 2823 3233 -80 313 137 0 0 chr3 73476418 73476469 -144560689 + L1P LINE L1 4743 4793 -1353 324 309 0 0 chr3 73476509 73476593 -144560565 - L2 LINE L2 -5 3308 3225 2324 103 3 0 chr3 73477415 73477715 -144559443 - AluSp SINE Alu -12 301 1 2059 82 0 97 chr3 73477766 73478095 -144559063 + AluY SINE Alu 1 297 -14 2146 125 0 10 chr3 73478735 73479030 -144558128 + AluSx SINE Alu 1 292 -20 474 205 0 27 chr3 73479109 73479221 -144557937 + FLAM_A SINE Alu 31 139 -3 266 211 0 0 chr3 73479836 73479888 -144557270 - Charlie8 DNA MER1_type -989 1428 1377 1220 173 17 90 chr3 73480210 73480510 -144556648 + AluJo SINE Alu 1 278 -34 274 325 0 0 chr3 73480510 73480593 -144556565 + G-rich Low_complexity Low_complexity 6 88 0 219 360 0 0 chr3 73481256 73481392 -144555766 + G-rich Low_complexity Low_complexity 1 136 0 208 271 0 0 chr3 73481433 73481492 -144555666 + G-rich Low_complexity Low_complexity 1 59 0 266 206 15 0 chr3 73481638 73481706 -144555452 + GA-rich Low_complexity Low_complexity 5 73 0 * 285 98 0 0 chr3 73481704 73481745 -144555413 + (GAAAA)n Simple_repeat Simple_repeat 5 45 0 796 199 38 71 chr3 73482038 73482249 -144554909 + MER3 DNA MER1_type 1 204 -5 279 243 29 14 chr3 73482190 73482260 -144554898 - MER3 DNA MER1_type -97 112 42 * 1020 171 6 0 chr3 73484013 73484183 -144552975 + AluJb SINE Alu 135 305 -7 184 182 0 0 chr3 73485052 73485085 -144552073 - L2 LINE L2 -30 3242 3210 1615 134 153 4 chr3 73485102 73485356 -144551802 + AluSx SINE Alu 1 292 -20 1171 171 130 87 chr3 73485360 73485498 -144551660 + LTR54B LTR ERV1 8 139 -359 1943 119 58 31 chr3 73485498 73485792 -144551366 + AluSx SINE Alu 1 302 -10 1171 171 130 87 chr3 73485792 73485942 -144551216 + LTR54B LTR ERV1 139 281 -217 2240 95 26 3 chr3 73485942 73486247 -144550911 - AluSp SINE Alu -1 312 1 1171 171 130 87 chr3 73486247 73486426 -144550732 + LTR54B LTR ERV1 281 496 -2 381 239 254 20 chr3 73488220 73488417 -144548741 + MIR SINE MIR 12 254 -8 838 298 56 38 chr3 73488563 73488959 -144548199 + MLT1J2 LTR MaLR 38 440 -10 307 204 68 39 chr3 73489765 73489868 -144547290 + L1ME LINE L1 5715 5820 -301 1770 162 20 3 chr3 73491370 73491666 -144545492 + AluJb SINE Alu 1 301 -11 207 0 0 0 chr3 73491686 73491709 -144545449 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2195 96 4 0 chr3 73491711 73491991 -144545167 - AluSq SINE Alu -32 281 1 37 52 0 0 chr3 73492150 73492208 -144544950 + AT_rich Low_complexity Low_complexity 1 58 0 779 176 0 15 chr3 73492263 73492394 -144544764 - AluJb SINE Alu -12 300 172 231 206 32 32 chr3 73493026 73493089 -144544069 - Charlie8 DNA MER1_type -2263 154 92 404 298 0 8 chr3 73493120 73493244 -144543914 + MIR SINE MIR 119 241 -21 1553 170 3 62 chr3 73493504 73493810 -144543348 + AluJo SINE Alu 1 288 -24 248 303 136 0 chr3 73494367 73494499 -144542659 - MIR SINE MIR -77 185 36 421 198 22 169 chr3 73494897 73495038 -144542120 + L2 LINE L2 3032 3192 -121 2437 28 42 3 chr3 73495038 73495323 -144541835 + AluY SINE Alu 2 297 -14 421 198 22 169 chr3 73495323 73495416 -144541742 + L2 LINE L2 3192 3212 -101 2354 78 0 0 chr3 73495416 73495751 -144541407 - AluY SINE Alu 0 335 1 421 198 22 169 chr3 73495751 73495827 -144541331 + L2 LINE L2 3212 3298 -15 229 336 78 0 chr3 73495859 73495987 -144541171 + MIR SINE MIR 108 245 -17 472 300 12 18 chr3 73496561 73496731 -144540427 + GA-rich Low_complexity Low_complexity 4 172 0 211 182 45 0 chr3 73496769 73496813 -144540345 + GA-rich Low_complexity Low_complexity 1 46 0 746 123 0 0 chr3 73496856 73496962 -144540196 + FLAM_C SINE Alu 2 107 -36 405 304 6 48 chr3 73497197 73497422 -144539736 + G-rich Low_complexity Low_complexity 1 215 0 286 205 26 0 chr3 73497470 73497548 -144539610 + GA-rich Low_complexity Low_complexity 1 80 0 203 386 0 0 chr3 73497549 73497650 -144539508 + G-rich Low_complexity Low_complexity 2 102 0 729 116 0 70 chr3 73497725 73497854 -144539304 + AluJb SINE Alu 11 130 -182 1704 187 7 0 chr3 73497862 73498151 -144539007 - AluJb SINE Alu -21 291 1 24 32 0 0 chr3 73498157 73498188 -144538970 + AT_rich Low_complexity Low_complexity 1 31 0 437 287 124 10 chr3 73498907 73499116 -144538042 + MIR SINE MIR 30 262 0 224 304 0 0 chr3 73499169 73499233 -144537925 - MIR SINE MIR -95 113 49 1227 260 61 26 chr3 73499494 73499987 -144537171 + L1ME3 LINE L1 5653 6162 0 3949 178 52 40 chr3 73500606 73500919 -144536239 + L1MB8 LINE L1 4857 5165 -1013 1535 216 21 0 chr3 73500919 73501202 -144535956 + AluJo SINE Alu 1 289 -23 3949 178 52 40 chr3 73501202 73501852 -144535306 + L1MB8 LINE L1 5165 5837 -341 785 189 0 0 chr3 73501852 73501984 -144535174 + FLAM_C SINE Alu 2 133 0 3949 178 52 40 chr3 73501984 73502326 -144534832 + L1MB8 LINE L1 5837 6173 -5 192 262 103 63 chr3 73502476 73502602 -144534556 + MIR3 SINE MIR 55 185 -23 301 288 152 0 chr3 73502682 73502814 -144534344 - MIR SINE MIR 0 262 111 840 250 81 110 chr3 73502815 73503091 -144534067 + HAL1 LINE L1 1828 2111 -396 987 199 0 0 chr3 73503091 73503252 -144533906 + FAM SINE Alu 1 161 -14 840 250 81 110 chr3 73503252 73503658 -144533500 + HAL1 LINE L1 2111 2490 -17 2555 64 0 0 chr3 73503661 73503958 -144533200 - AluY SINE Alu -14 297 1 727 111 10 0 chr3 73504560 73504659 -144532499 - AluSq SINE Alu -102 211 112 1734 193 3 13 chr3 73504741 73505046 -144532112 + AluJo SINE Alu 1 302 -10 2294 109 3 0 chr3 73505150 73505452 -144531706 + AluSx SINE Alu 1 303 -9 507 223 109 50 chr3 73506437 73506657 -144530501 + MIR SINE MIR 30 262 0 366 279 10 10 chr3 73506661 73506765 -144530393 - MIR SINE MIR -99 163 60 1903 130 69 0 chr3 73506898 73507175 -144529983 + AluJb SINE Alu 5 300 -12 249 33 0 0 chr3 73507824 73507854 -144529304 + (TG)n Simple_repeat Simple_repeat 2 31 0 1481 119 140 0 chr3 73507855 73508090 -144529068 - AluJb SINE Alu -33 279 12 185 296 11 68 chr3 73508149 73508237 -144528921 + L2 LINE L2 3231 3313 0 1714 182 0 3 chr3 73508260 73508556 -144528602 + AluJo SINE Alu 1 295 -17 279 131 49 33 chr3 73509139 73509200 -144527958 - LTR67 LTR ERVL -4 553 492 237 254 0 16 chr3 73509478 73509541 -144527617 + A-rich Low_complexity Low_complexity 4 65 0 2112 147 0 6 chr3 73509566 73509879 -144527279 + AluJb SINE Alu 1 311 -1 1195 167 122 0 chr3 73511505 73511750 -144525408 - L1PA16 LINE L1 -1 6165 5891 338 299 71 19 chr3 73511797 73512008 -144525150 + L1ME LINE L1 5577 5798 -323 2139 132 7 0 chr3 73512032 73512327 -144524831 + AluSq SINE Alu 1 297 -16 2637 113 3 0 chr3 73512400 73512763 -144524395 + THE1B LTR MaLR 1 364 0 547 308 75 9 chr3 73513382 73513764 -144523394 + MLT1J LTR MaLR 65 511 0 231 204 0 0 chr3 73515848 73515902 -144521256 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 224 267 0 0 chr3 73516700 73516760 -144520398 - L2 LINE L2 -218 3054 2995 2520 52 3 3 chr3 73516999 73517307 -144519851 + AluY SINE Alu 1 308 -3 1732 157 40 10 chr3 73517844 73518144 -144519014 + AluJb SINE Alu 1 309 -3 201 289 0 0 chr3 73518255 73518300 -144518858 - L2 LINE L2 -18 3254 3210 1321 44 6 0 chr3 73518641 73518801 -144518357 + L1PA5 LINE L1 5979 6139 -15 387 0 0 0 chr3 73518801 73518844 -144518314 + (TA)n Simple_repeat Simple_repeat 2 44 0 202 232 232 0 chr3 73519580 73519649 -144517509 - MER5A DNA MER1_type -28 161 77 243 241 136 0 chr3 73519726 73519824 -144517334 - MIR SINE MIR -63 145 67 359 293 66 12 chr3 73520399 73520566 -144516592 - MIR SINE MIR -34 228 53 899 248 107 26 chr3 73520604 73521085 -144516073 - MLT1G LTR MaLR 0 590 53 312 290 54 8 chr3 73521094 73521243 -144515915 - MIR SINE MIR -70 138 24 251 271 47 39 chr3 73523291 73523420 -144513738 + L1ME4a LINE L1 5592 5721 -400 860 196 26 0 chr3 73523422 73523575 -144513583 + FRAM SINE Alu 1 149 -27 243 226 116 48 chr3 73523585 73523803 -144513355 + L1ME4a LINE L1 5721 5942 -179 1294 142 9 9 chr3 73523820 73524031 -144513127 + MER2 DNA MER2_type 1 211 -134 550 206 0 0 chr3 73524175 73524277 -144512881 + AluJo SINE Alu 23 124 -188 1813 63 5 0 chr3 73524277 73524500 -144512658 + L1PA6 LINE L1 5900 6123 -31 485 60 0 15 chr3 73524500 73524586 -144512572 + L1PA6 LINE L1 6088 6154 0 1052 169 6 6 chr3 73524610 73524793 -144512365 + AluJo SINE Alu 130 312 0 1322 86 5 5 chr3 73525598 73525796 -144511362 + L1MA5A LINE L1 6098 6295 -2 28 29 0 0 chr3 73525796 73525831 -144511327 + AT_rich Low_complexity Low_complexity 1 35 0 1771 143 28 14 chr3 73525831 73526118 -144511040 - AluJb SINE Alu -21 291 1 225 233 0 0 chr3 73527345 73527388 -144509770 + MIR SINE MIR 210 252 -10 1460 166 8 26 chr3 73529922 73530187 -144506971 - AluJb SINE Alu -44 268 9 482 279 101 23 chr3 73530209 73530428 -144506730 + MIR SINE MIR 1 236 -26 221 250 0 0 chr3 73530432 73530476 -144506682 + (CA)n Simple_repeat Simple_repeat 2 45 0 2327 114 0 0 chr3 73530627 73530934 -144506224 + AluSx SINE Alu 1 307 -5 257 354 20 0 chr3 73531310 73531457 -144505701 + L2 LINE L2 2730 2879 -435 184 214 87 87 chr3 73531660 73531763 -144505395 + L2 LINE L2 3182 3284 -29 * 203 265 0 0 chr3 73531755 73531804 -144505354 - L3 LINE CR1 -134 1443 1395 306 274 189 0 chr3 73531987 73532093 -144505065 - MER5B DNA MER1_type -52 126 1 344 240 240 6 chr3 73532101 73532272 -144504886 - MER5C DNA MER1_type 0 324 114 269 247 0 78 chr3 73532285 73532362 -144504796 + AluJo SINE Alu 87 157 -145 720 186 0 0 chr3 73532407 73532520 -144504638 - FLAM_A SINE Alu -7 135 23 342 233 23 39 chr3 73532521 73532650 -144504508 - MER5C DNA MER1_type -196 128 2 2262 117 0 0 chr3 73533505 73533803 -144503355 + AluSx SINE Alu 1 298 -14 373 328 104 0 chr3 73534184 73534309 -144502849 - MIR SINE MIR -78 184 47 248 327 80 49 chr3 73534654 73534816 -144502342 + L2 LINE L2 2867 3033 -280 1989 97 65 11 chr3 73535206 73535485 -144501673 - AluSg1 SINE Alu -15 294 1 1787 155 0 34 chr3 73536146 73536442 -144500716 + AluJb SINE Alu 3 288 -24 974 174 0 43 chr3 73536446 73536630 -144500528 + AluJb SINE Alu 132 307 -5 2447 127 3 12 chr3 73536710 73537049 -144500109 - MER1B DNA MER1_type 0 337 2 2332 99 0 0 chr3 73537757 73538059 -144499099 - AluSx SINE Alu -10 302 1 411 279 128 29 chr3 73538744 73538948 -144498210 - MIR SINE MIR -32 230 7 195 194 32 81 chr3 73539531 73539593 -144497565 + MIR SINE MIR 88 146 -62 1830 127 47 10 chr3 73539892 73540191 -144496967 + AluSx SINE Alu 1 310 -2 297 279 93 23 chr3 73540474 73540603 -144496555 + MER103 DNA DNA 18 155 -11 280 253 13 0 chr3 73541296 73541371 -144495787 - Charlie8 DNA MER1_type -6 2411 2336 228 274 32 0 chr3 73541469 73541531 -144495627 - Charlie8 DNA MER1_type -2353 64 1 515 252 126 13 chr3 73541741 73541900 -144495258 + MIR SINE MIR 80 256 -6 262 143 54 18 chr3 73542846 73542958 -144494200 + (TA)n Simple_repeat Simple_repeat 2 117 0 1605 172 0 8 chr3 73542965 73543226 -144493932 - AluSx SINE Alu -9 303 45 2251 114 36 36 chr3 73543228 73543589 -144493569 - THE1B LTR MaLR 0 364 4 312 170 0 0 chr3 73543592 73543639 -144493519 - AluSx SINE Alu -255 47 1 297 89 0 0 chr3 73543673 73543718 -144493440 + (CA)n Simple_repeat Simple_repeat 1 45 0 5769 126 42 10 chr3 73544121 73545005 -144492153 + L1MC1 LINE L1 5416 6327 -6 2405 87 0 0 chr3 73545281 73545580 -144491578 - AluSc SINE Alu -10 299 1 1899 160 6 6 chr3 73546181 73546493 -144490665 + AluJo SINE Alu 1 312 0 336 83 0 0 chr3 73546563 73546611 -144490547 + (TC)n Simple_repeat Simple_repeat 1 48 0 234 311 184 40 chr3 73546841 73547188 -144489970 - L3 LINE CR1 -3 1574 1178 2339 88 0 0 chr3 73547650 73547947 -144489211 + AluSg SINE Alu 1 297 -13 2098 133 0 7 chr3 73548212 73548512 -144488646 - AluSx SINE Alu -14 298 1 665 176 0 17 chr3 73548714 73548812 -144488346 + AluJb SINE Alu 189 286 -26 370 0 0 39 chr3 73548812 73548864 -144488294 + (CA)n Simple_repeat Simple_repeat 1 50 0 665 176 0 17 chr3 73548864 73548884 -144488274 + AluJb SINE Alu 286 305 -7 457 328 57 5 chr3 73548932 73549124 -144488034 - MIR SINE MIR -16 246 45 1645 201 76 30 chr3 73549161 73549594 -144487564 + MLT1C LTR MaLR 7 459 -8 2489 67 0 7 chr3 73550129 73550427 -144486731 - AluSc SINE Alu -13 296 1 266 329 12 12 chr3 73550636 73550718 -144486440 + MER91A DNA MER1_type 4 85 -111 645 229 20 26 chr3 73551632 73551785 -144485373 + MIR SINE MIR 111 262 0 1936 146 7 0 chr3 73552592 73552880 -144484278 - AluJb SINE Alu -22 290 1 567 164 52 17 chr3 73552886 73553002 -144484156 - MIR SINE MIR -69 193 74 664 240 82 14 chr3 73553031 73553239 -144483919 + MER113 DNA MER1_type? 79 300 -221 348 83 0 0 chr3 73553239 73553287 -144483871 + (TC)n Simple_repeat Simple_repeat 2 49 0 4270 109 72 8 chr3 73553298 73553615 -144483543 + MER41B LTR ERV1 1 296 -339 2146 117 3 3 chr3 73553615 73553915 -144483243 + AluSq SINE Alu 1 300 -13 4270 109 72 8 chr3 73553915 73554194 -144482964 + MER41B LTR ERV1 296 635 0 434 320 59 5 chr3 73554197 73554419 -144482739 + MER113 DNA MER1_type? 288 521 0 599 288 104 35 chr3 73554521 73554868 -144482290 + L3 LINE CR1 814 1184 -393 316 299 91 32 chr3 73554870 73555057 -144482101 + L2 LINE L2 3052 3249 -64 575 265 51 31 chr3 73555057 73555253 -144481905 - MER63A DNA MER1_type -3 207 8 183 91 30 61 chr3 73555342 73555375 -144481783 + L3 LINE CR1 1455 1486 -91 765 203 19 19 chr3 73555922 73556080 -144481078 + AluJb SINE Alu 149 306 -6 2304 73 21 0 chr3 73556249 73556535 -144480623 - AluSc SINE Alu -17 292 1 261 272 80 40 chr3 73556750 73556875 -144480283 + MIR SINE MIR 22 151 -111 2183 75 0 4 chr3 73556937 73557218 -144479940 + AluY SINE Alu 1 280 -31 1905 153 0 7 chr3 73558778 73559073 -144478085 - AluJb SINE Alu -19 293 1 4607 56 0 2 chr3 73559107 73559645 -144477513 + L1PA5 LINE L1 5612 6148 -6 1993 149 0 28 chr3 73560130 73560451 -144476707 - AluSx SINE Alu 0 312 1 269 330 21 0 chr3 73560534 73560631 -144476527 - MIR SINE MIR -14 248 150 2094 111 21 0 chr3 73560713 73561002 -144476156 - AluSq SINE Alu -18 295 1 271 304 82 116 chr3 73561480 73561809 -144475349 + L2 LINE L2 2930 3247 -25 330 185 198 12 chr3 73561934 73562015 -144475143 - MER5A DNA MER1_type -80 109 14 2176 134 0 0 chr3 73562039 73562344 -144474814 + AluSx SINE Alu 1 305 -7 1504 186 62 0 chr3 73563095 73563214 -144473944 + AluJo SINE Alu 1 111 -201 243 0 0 0 chr3 73563214 73563241 -144473917 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 1504 186 62 0 chr3 73563241 73563379 -144473779 + AluJo SINE Alu 111 274 -38 351 0 0 0 chr3 73563391 73563430 -144473728 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 318 203 0 0 chr3 73563749 73563818 -144473340 - L1MC4 LINE L1 -1339 6703 6635 1931 227 102 41 chr3 73565523 73566079 -144471079 + MLT1G1 LTR MaLR 3 592 -3 703 134 0 0 chr3 73566296 73566393 -144470765 + HY3 scRNA scRNA 2 98 -3 1231 115 5 62 chr3 73566467 73566659 -144470499 + AluSx SINE Alu 1 181 -131 2065 121 7 3 chr3 73567205 73567512 -144469646 + AluSx SINE Alu 1 308 -4 431 288 41 7 chr3 73568373 73568519 -144468639 + MIR SINE MIR 63 213 -49 25 83 0 0 chr3 73568666 73568726 -144468432 + AT_rich Low_complexity Low_complexity 1 60 0 385 376 48 20 chr3 73568779 73569029 -144468129 + L2 LINE L2 2966 3222 -50 247 341 11 0 chr3 73569094 73569185 -144467973 + MIR SINE MIR 164 255 -7 224 308 0 8 chr3 73570471 73570567 -144466591 + MIR SINE MIR 15 107 -103 805 284 26 0 chr3 73570676 73570908 -144466250 + LTR16A LTR ERVL 105 342 -108 1933 138 0 0 chr3 73571688 73571956 -144465202 + AluSx SINE Alu 38 305 -7 207 220 17 51 chr3 73571976 73572035 -144465123 + L2 LINE L2 3212 3268 -4 2303 116 3 0 chr3 73572289 73572600 -144464558 + AluSx SINE Alu 1 312 0 2394 97 0 0 chr3 73572647 73572956 -144464202 + AluY SINE Alu 1 309 -2 633 221 15 0 chr3 73573295 73573426 -144463732 + MER94 DNA DNA 1 133 -1 434 286 107 29 chr3 73573527 73573835 -144463323 - L1ME4a LINE L1 -191 5930 5599 204 349 0 0 chr3 73573994 73574072 -144463086 + L2 LINE L2 2908 2985 -328 1005 128 0 0 chr3 73574228 73574361 -144462797 + FLAM_C SINE Alu 1 133 0 528 276 64 15 chr3 73574587 73574790 -144462368 + MIR SINE MIR 47 259 -3 426 358 112 4 chr3 73575356 73575588 -144461570 - MIR SINE MIR -2 260 4 2384 140 78 12 chr3 73575899 73576321 -144460837 + L1MB3 LINE L1 5727 6176 -7 367 215 21 0 chr3 73577636 73577729 -144459429 - MIR SINE MIR -122 140 46 186 43 0 0 chr3 73578169 73578192 -144458966 + (TTCA)n Simple_repeat Simple_repeat 2 24 0 323 267 167 22 chr3 73578193 73578373 -144458785 - L2 LINE L2 -13 3300 3095 1039 193 47 14 chr3 73578411 73578623 -144458535 - MER20 DNA MER1_type 0 219 1 476 299 89 18 chr3 73578630 73578854 -144458304 + MIR SINE MIR 11 250 -12 253 274 45 76 chr3 73579012 73579169 -144457989 + MLT1K LTR MaLR 2 153 -435 1950 136 36 0 chr3 73579324 73579604 -144457554 + AluSx SINE Alu 1 290 -22 354 275 38 38 chr3 73579763 73579894 -144457264 + MLT1K LTR MaLR 458 588 0 824 215 94 0 chr3 73580278 73580469 -144456689 - MER3 DNA MER1_type 0 209 1 218 298 68 43 chr3 73580763 73580924 -144456234 + MER5A DNA MER1_type 24 188 -1 * 416 255 7 48 chr3 73580784 73580929 -144456229 - MER5A DNA MER1_type -40 149 11 24 32 0 0 chr3 73581623 73581654 -144455504 + AT_rich Low_complexity Low_complexity 1 31 0 3324 120 24 26 chr3 73582470 73582896 -144454262 + MER41B LTR ERV1 97 523 -112 2080 132 0 3 chr3 73582896 73583192 -144453966 - AluY SINE Alu -16 295 1 3324 120 24 26 chr3 73583192 73583305 -144453853 + MER41B LTR ERV1 523 635 0 1348 169 9 0 chr3 73583306 73583525 -144453633 + AluJb SINE Alu 64 284 -28 749 161 0 0 chr3 73584132 73584244 -144452914 + AluSg/x SINE Alu 192 303 -7 1887 216 83 36 chr3 73585064 73585536 -144451622 - MLT1F LTR MaLR -44 498 5 2296 85 20 10 chr3 73585703 73586008 -144451150 + AluSx SINE Alu 1 308 -4 21 0 0 0 chr3 73586097 73586118 -144451040 + AT_rich Low_complexity Low_complexity 1 21 0 715 160 0 34 chr3 73586121 73586240 -144450918 - FLAM_C SINE Alu -12 131 17 349 350 96 26 chr3 73586734 73587162 -144449996 - L2 LINE L2 -7 3306 2849 1261 171 73 24 chr3 73587245 73587491 -144449667 + AluJo SINE Alu 35 292 -20 1053 248 64 61 chr3 73587491 73587931 -144449227 + MLT1H LTR MaLR 93 533 -16 246 276 13 53 chr3 73587965 73588041 -144449117 - L2 LINE L2 -527 2787 2715 1616 104 192 12 chr3 73588216 73588466 -144448692 + AluSg SINE Alu 1 295 -5 941 181 0 0 chr3 73588611 73588755 -144448403 - FRAM SINE Alu -31 145 2 687 57 0 0 chr3 73588779 73588867 -144448291 + (TGG)n Simple_repeat Simple_repeat 1 88 0 269 187 32 24 chr3 73590130 73590253 -144446905 + (TTAAA)n Simple_repeat Simple_repeat 1 124 0 21 0 0 0 chr3 73590474 73590495 -144446663 + AT_rich Low_complexity Low_complexity 1 21 0 2045 179 13 37 chr3 73592138 73592512 -144444646 - MLT1A1 LTR MaLR 0 365 1 2425 77 0 3 chr3 73592925 73593223 -144443935 + AluSx SINE Alu 2 298 -14 826 167 123 54 chr3 73593290 73593494 -144443664 - MER20 DNA MER1_type -1 218 1 1718 151 22 4 chr3 73593644 73593947 -144443211 - AluJb SINE Alu 0 308 1 317 178 55 27 chr3 73594492 73594565 -144442593 + MIR SINE MIR 115 189 -73 1980 141 0 10 chr3 73594596 73594894 -144442264 + AluSx SINE Alu 1 295 -17 2288 82 7 3 chr3 73595154 73595447 -144441711 + AluSg SINE Alu 1 294 -16 234 156 0 0 chr3 73595488 73595533 -144441625 + (TG)n Simple_repeat Simple_repeat 2 46 0 1687 169 13 20 chr3 73596094 73596396 -144440762 + AluJo SINE Alu 1 300 -12 271 286 22 11 chr3 73596436 73596527 -144440631 + GA-rich Low_complexity Low_complexity 2 93 0 383 256 31 99 chr3 73596935 73597074 -144440084 - MER5A DNA MER1_type 0 189 65 994 109 0 0 chr3 73597074 73597211 -144439947 - L1PA13 LINE L1 0 6163 6027 383 256 31 99 chr3 73597211 73597262 -144439896 - MER5A DNA MER1_type -124 65 12 244 291 0 58 chr3 73597258 73597298 -144439860 - L2 LINE L2 -3 3310 3276 * 2984 134 19 0 chr3 73597298 73597724 -144439434 + MER57B LTR ERV1 1 434 0 244 291 0 58 chr3 73597724 73597769 -144439389 - L2 LINE L2 -37 3276 3230 23 68 0 0 chr3 73597808 73597852 -144439306 + AT_rich Low_complexity Low_complexity 1 44 0 1726 171 3 16 chr3 73599476 73599780 -144437378 - AluJo SINE Alu -11 301 2 2390 100 0 6 chr3 73599793 73600104 -144437054 - AluSx SINE Alu -3 309 1 225 323 15 0 chr3 73601101 73601166 -144435992 + L2 LINE L2 3242 3307 -6 1473 149 17 0 chr3 73601694 73601967 -144435191 + AluJb SINE Alu 68 344 0 906 152 43 49 chr3 73602718 73602812 -144434346 + MER30 DNA MER1_type 1 95 -135 845 81 0 8 chr3 73602812 73602936 -144434222 + (GGAA)n Simple_repeat Simple_repeat 2 124 0 906 152 43 49 chr3 73602936 73603025 -144434133 + MER30 DNA MER1_type 95 183 -47 361 294 74 6 chr3 73603056 73603219 -144433939 + MER3 DNA MER1_type 15 188 -21 * 1551 171 66 6 chr3 73603199 73603561 -144433597 + MER3 DNA MER1_type 2236 2619 0 1445 205 156 19 chr3 73603607 73604017 -144433141 - Charlie4a DNA MER1_type -6 502 37 2405 88 0 0 chr3 73604395 73604701 -144432457 + AluY SINE Alu 1 306 -5 789 202 28 11 chr3 73604765 73604943 -144432215 - MIR SINE MIR -5 257 77 466 256 126 16 chr3 73606528 73606719 -144430439 + MIR SINE MIR 29 240 -22 321 312 83 0 chr3 73606775 73606884 -144430274 - MIR SINE MIR -76 186 69 189 222 0 0 chr3 73606958 73607021 -144430137 + GA-rich Low_complexity Low_complexity 1 63 0 718 180 78 0 chr3 73607087 73607215 -144429943 + FLAM_C SINE Alu 2 139 -4 353 264 138 12 chr3 73608093 73608260 -144428898 - MIR SINE MIR -28 234 47 1051 255 90 54 chr3 73608453 73608578 -144428580 + L1ME3A LINE L1 5465 5584 -586 1912 139 0 14 chr3 73608578 73608872 -144428286 + AluSx SINE Alu 1 290 -22 1051 255 90 54 chr3 73608872 73609095 -144428063 + L1ME3A LINE L1 5584 5839 -331 1677 191 3 25 chr3 73609095 73609414 -144427744 + AluJb SINE Alu 1 312 0 1051 255 90 54 chr3 73609414 73609566 -144427592 + L1ME3A LINE L1 5839 5984 -186 1952 127 36 0 chr3 73609617 73609922 -144427236 - AluSq SINE Alu 0 315 1 1983 154 0 0 chr3 73610570 73610875 -144426283 + AluSx SINE Alu 1 305 -7 1438 154 150 0 chr3 73611309 73611462 -144425696 - AluJo SINE Alu -2 310 181 426 20 0 0 chr3 73611462 73611513 -144425645 + (TTA)n Simple_repeat Simple_repeat 2 52 0 1438 154 150 0 chr3 73611513 73611625 -144425533 - AluJo SINE Alu -131 181 5 2478 71 0 7 chr3 73611663 73611971 -144425187 - AluY SINE Alu -5 306 1 22 0 0 0 chr3 73612472 73612494 -144424664 + AT_rich Low_complexity Low_complexity 1 22 0 2350 57 20 10 chr3 73613987 73614285 -144422873 - AluY SINE Alu -10 301 1 1849 145 32 26 chr3 73614417 73614727 -144422431 + AluSx SINE Alu 1 312 0 1692 125 79 18 chr3 73614913 73615193 -144421965 + AluSx SINE Alu 1 297 -15 2169 100 0 4 chr3 73615200 73615500 -144421658 + AluSc SINE Alu 1 299 0 269 336 28 9 chr3 73615641 73615748 -144421410 + L2 LINE L2 3200 3308 -5 240 350 0 43 chr3 73615759 73615876 -144421282 - MIR SINE MIR -122 140 29 919 261 163 0 chr3 73617106 73617443 -144419715 + MER113 DNA MER1_type? 13 404 -117 1605 134 95 11 chr3 73617529 73617813 -144419345 - AluSx SINE Alu 0 312 5 25 0 0 0 chr3 73618239 73618264 -144418894 + AT_rich Low_complexity Low_complexity 1 25 0 558 200 11 0 chr3 73618367 73618462 -144418696 + FRAM SINE Alu 31 126 -50 360 274 113 0 chr3 73618572 73618678 -144418480 + MIR SINE MIR 117 234 -28 957 252 14 5 chr3 73618794 73619008 -144418150 - MIR SINE MIR -41 221 6 289 292 44 0 chr3 73619088 73619201 -144417957 + L1MC4 LINE L1 7924 8041 -1 719 283 28 61 chr3 73620005 73620397 -144416761 + L1MC4a LINE L1 5517 5895 -1913 32 0 0 0 chr3 73620456 73620488 -144416670 + AT_rich Low_complexity Low_complexity 1 32 0 850 163 111 58 chr3 73621164 73621354 -144415804 - MER20 DNA MER1_type -5 214 15 814 215 65 20 chr3 73621553 73621753 -144415405 + MER3 DNA MER1_type 1 209 0 230 277 0 31 chr3 73621775 73621840 -144415318 + L2 LINE L2 3251 3313 0 2317 178 16 13 chr3 73621945 73622395 -144414763 + L1MB3 LINE L1 5733 6183 0 2284 84 0 0 chr3 73622788 73623072 -144414086 + AluSc SINE Alu 1 284 -25 31 0 0 0 chr3 73624308 73624339 -144412819 + AT_rich Low_complexity Low_complexity 1 31 0 185 319 60 9 chr3 73624622 73624738 -144412420 - MIR SINE MIR -59 203 82 1066 127 7 0 chr3 73624870 73625059 -144412099 + FRAM SINE Alu 2 191 0 363 344 104 0 chr3 73625476 73625668 -144411490 + MIR SINE MIR 48 259 -3 246 324 88 0 chr3 73626047 73626149 -144411009 + L2 LINE L2 3161 3271 -1 294 148 0 0 chr3 73626161 73626215 -144410943 + (GGGA)n Simple_repeat Simple_repeat 1 54 0 561 129 0 0 chr3 73626217 73626310 -144410848 + (TGGA)n Simple_repeat Simple_repeat 1 93 0 1832 189 157 40 chr3 73626333 73626810 -144410348 - MLT1F LTR MaLR 0 542 10 981 131 0 0 chr3 73627339 73627476 -144409682 + AluJo SINE Alu 1 137 -175 38 22 0 0 chr3 73627497 73627542 -144409616 + AT_rich Low_complexity Low_complexity 1 45 0 2059 133 0 7 chr3 73628212 73628512 -144408646 + AluSx SINE Alu 1 298 -14 199 204 0 56 chr3 73629023 73629077 -144408081 - L3b LINE CR1 -14 1569 1519 2082 124 0 38 chr3 73629294 73629608 -144407550 + AluSx SINE Alu 1 302 -10 346 304 75 28 chr3 73629664 73629917 -144407241 + L2 LINE L2 2872 3136 -177 771 230 108 10 chr3 73630008 73630212 -144406946 - MIR SINE MIR -16 246 23 263 215 46 15 chr3 73630238 73630303 -144406855 + L2 LINE L2 3205 3271 -42 2334 104 7 0 chr3 73630483 73630792 -144406366 - AluSq SINE Alu -2 311 1 346 237 10 41 chr3 73631997 73632094 -144405064 + MIR SINE MIR 33 126 -136 2178 124 0 7 chr3 73632146 73632445 -144404713 + AluSx SINE Alu 1 297 -15 646 205 0 105 chr3 73632691 73632743 -144404415 - MER3 DNA MER1_type -39 123 67 2168 112 30 7 chr3 73632743 73633048 -144404110 + AluSx SINE Alu 1 312 0 646 205 0 105 chr3 73633048 73633185 -144403973 - MER3 DNA MER1_type -95 67 1 290 267 153 20 chr3 73633256 73633406 -144403752 + MIR SINE MIR 23 192 -70 2169 125 39 36 chr3 73633438 73633799 -144403359 + THE1B LTR MaLR 3 364 0 1200 188 14 0 chr3 73634781 73634999 -144402159 - AluJo SINE Alu -7 305 85 22 35 0 0 chr3 73635437 73635466 -144401692 + AT_rich Low_complexity Low_complexity 1 29 0 549 235 5 130 chr3 73635620 73635820 -144401338 + MIR SINE MIR 69 243 -19 2119 122 0 3 chr3 73635877 73636164 -144400994 + AluSx SINE Alu 1 286 -26 342 0 0 0 chr3 73636379 73636417 -144400741 + (TG)n Simple_repeat Simple_repeat 1 38 0 1545 168 0 64 chr3 73636417 73636714 -144400444 - AluJb SINE Alu -33 279 2 2202 121 14 3 chr3 73638739 73639036 -144398122 - AluSx SINE Alu -12 300 1 366 281 29 53 chr3 73639124 73639295 -144397863 + MIR SINE MIR 65 231 -31 489 180 110 0 chr3 73639336 73639436 -144397722 + MER96B DNA MER1_type? 1 111 -306 1458 196 94 0 chr3 73639461 73639737 -144397421 - AluJb SINE Alu -10 302 1 259 288 44 75 chr3 73640779 73640939 -144396219 - MIR SINE MIR -61 201 47 318 305 84 18 chr3 73641153 73641320 -144395838 - MER5B DNA MER1_type 0 178 1 2170 128 0 3 chr3 73641402 73641707 -144395451 - AluSx SINE Alu -8 304 1 313 250 29 0 chr3 73641818 73641922 -144395236 - MER113 DNA MER1_type? -405 116 10 195 42 0 0 chr3 73641927 73641951 -144395207 + (ATG)n Simple_repeat Simple_repeat 3 26 0 346 231 0 48 chr3 73642588 73642692 -144394466 - MER113 DNA MER1_type? -44 477 379 1055 170 0 0 chr3 73642708 73642867 -144394291 + FRAM SINE Alu 1 158 -18 2278 108 3 16 chr3 73642875 73643191 -144393967 + AluSx SINE Alu 1 312 0 247 240 107 0 chr3 73643194 73643269 -144393889 - MER113 DNA MER1_type? -437 84 2 2337 111 0 0 chr3 73643745 73644052 -144393106 + AluSq SINE Alu 1 307 -6 227 362 11 0 chr3 73644170 73644264 -144392894 + MIR SINE MIR 162 256 -6 281 295 21 42 chr3 73644617 73644712 -144392446 - MER5A DNA MER1_type -88 101 9 1667 151 14 21 chr3 73644832 73645123 -144392035 - AluJo SINE Alu -3 309 21 256 232 0 0 chr3 73645503 73645559 -144391599 - L2 LINE L2 -2 3311 3256 2289 114 0 0 chr3 73646004 73646303 -144390855 + AluSx SINE Alu 1 299 -13 464 219 35 123 chr3 73646520 73646748 -144390410 - MLT1G LTR MaLR 0 590 383 1156 159 0 0 chr3 73647856 73648032 -144389126 + FRAM SINE Alu 1 168 -8 440 231 46 58 chr3 73648159 73648332 -144388826 + MIR SINE MIR 92 262 0 2466 65 0 0 chr3 73649386 73649677 -144387481 + AluY SINE Alu 1 291 -20 1360 121 225 12 chr3 73649888 73650137 -144387021 + AluSg1 SINE Alu 1 302 -7 1358 86 5 5 chr3 73651087 73651274 -144385884 - L1PA10 LINE L1 -12 6156 5970 2400 69 0 13 chr3 73651983 73652286 -144384872 - AluY SINE Alu -12 299 1 230 338 0 0 chr3 73752632 73752706 -144284452 + MIR SINE MIR 84 157 -105 27 29 0 0 chr3 73752806 73752840 -144284318 + AT_rich Low_complexity Low_complexity 1 34 0 1351 237 68 3 chr3 73753005 73753326 -144283832 + MLT2C1 LTR ERVL 1 342 -55 274 107 36 0 chr3 73753336 73753392 -144283766 + CT-rich Low_complexity Low_complexity 1 58 0 201 337 31 31 chr3 73753734 73753832 -144283326 + MIR3 SINE MIR 77 174 -34 23 0 0 0 chr3 73754129 73754152 -144283006 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr3 73754660 73754687 -144282471 + AT_rich Low_complexity Low_complexity 1 27 0 3476 162 71 124 chr3 73755159 73755199 -144281959 - L1MA8 LINE L1 -10 6281 6240 2023 181 26 21 chr3 73755199 73755393 -144281765 + MSTB1 LTR MaLR 1 193 -239 2091 113 3 0 chr3 73755393 73755685 -144281473 + AluSx SINE Alu 1 293 -19 2023 181 26 21 chr3 73755685 73755920 -144281238 + MSTB1 LTR MaLR 193 432 0 3476 162 71 124 chr3 73755920 73756430 -144280728 - L1MA8 LINE L1 -51 6240 5820 180 0 0 0 chr3 73756430 73756450 -144280708 + (CA)n Simple_repeat Simple_repeat 2 21 0 3476 162 71 124 chr3 73756450 73757015 -144280143 - L1MA8 LINE L1 -471 5820 5226 34 79 0 0 chr3 73757179 73757255 -144279903 + AT_rich Low_complexity Low_complexity 1 76 0 544 239 63 58 chr3 73757299 73757504 -144279654 + MLT1J2 LTR MaLR 75 280 -170 1801 115 0 15 chr3 73757840 73758110 -144279048 - AluSc SINE Alu -41 268 3 22 0 0 0 chr3 73758703 73758725 -144278433 + AT_rich Low_complexity Low_complexity 1 22 0 254 330 117 32 chr3 73758730 73758918 -144278240 + MIR SINE MIR 53 256 -6 281 273 23 45 chr3 73759232 73759320 -144277838 - MIR SINE MIR -21 241 156 7173 216 20 23 chr3 73759488 73761850 -144275308 - L1P4 LINE L1 -345 5821 3471 7395 95 4 20 chr3 73761892 73762966 -144274192 - MER11C LTR ERVK -14 1057 1 531 245 0 26 chr3 73762967 73763122 -144274036 - L1 LINE L1 -2673 4892 4742 352 248 78 35 chr3 73763218 73763359 -144273799 - L1M LINE L1 -2408 5400 5254 185 62 0 31 chr3 73763413 73763445 -144273713 + (TTA)n Simple_repeat Simple_repeat 2 32 0 336 331 7 28 chr3 73764160 73764305 -144272853 + MER69 DNA AcHobo 410 551 -675 450 256 43 14 chr3 73764337 73764544 -144272614 + MER69 DNA AcHobo 2314 2526 0 271 303 22 0 chr3 73764731 73764820 -144272338 - MIR SINE MIR -96 166 76 600 213 0 7 chr3 73764993 73765134 -144272024 - L1MC3 LINE L1 -1470 6315 6176 423 153 176 0 chr3 73765138 73765223 -144271935 + L1MC3 LINE L1 6034 6133 -1652 2249 134 17 3 chr3 73766804 73767161 -144269997 + THE1B LTR MaLR 1 362 -2 6910 127 14 83 chr3 73767208 73768499 -144268659 + THE1B-int LTR MaLR 17 1218 -362 3692 220 63 22 chr3 73768668 73769705 -144267453 - Tigger6a DNA MER2_type -4 1079 1 480 350 34 19 chr3 73770429 73770635 -144266523 - MIR SINE MIR -31 231 23 25 51 0 0 chr3 73771680 73771719 -144265439 + AT_rich Low_complexity Low_complexity 1 39 0 4166 206 33 33 chr3 73772573 73773805 -144263353 - L1 LINE L1 -2883 4682 3438 * 5583 52 6 0 chr3 73773802 73774516 -144262642 - L1P LINE L1 -1096 5050 4333 945 92 0 0 chr3 73774516 73774647 -144262511 - L1P LINE L1 -4145 2001 1871 7153 50 1 0 chr3 73774647 73775667 -144261491 + L1PA5 LINE L1 5121 6141 -13 233 185 8 138 chr3 73775693 73775823 -144261335 - L1 LINE L1 -4110 3455 3343 6171 180 43 32 chr3 73775831 73775872 -144261286 + L1M2 LINE L1 4062 4101 -2199 2282 74 0 7 chr3 73775872 73776168 -144260990 - AluY SINE Alu -17 294 1 6171 180 43 32 chr3 73776168 73777837 -144259321 + L1M2 LINE L1 4101 5808 -492 180 111 0 0 chr3 73777837 73777864 -144259294 + (TA)n Simple_repeat Simple_repeat 2 28 0 6171 180 43 32 chr3 73777864 73777875 -144259283 + L1M2 LINE L1 5808 5817 -483 207 0 0 0 chr3 73777899 73777922 -144259236 + (TG)n Simple_repeat Simple_repeat 2 24 0 228 163 0 0 chr3 73777995 73778038 -144259120 + (CATA)n Simple_repeat Simple_repeat 2 44 0 492 328 93 34 chr3 73778184 73778562 -144258596 - L1 LINE L1 -5552 2014 1615 26 50 0 0 chr3 73778674 73778714 -144258444 + GC_rich Low_complexity Low_complexity 1 40 0 28 29 0 0 chr3 73780175 73780210 -144256948 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr3 73780520 73780545 -144256613 + AT_rich Low_complexity Low_complexity 1 25 0 2405 107 55 5 chr3 73780655 73781039 -144256119 - L1MA1 LINE L1 -2 6300 5898 1742 156 10 0 chr3 73781436 73781725 -144255433 + AluSx SINE Alu 13 304 -8 1827 127 7 7 chr3 73782156 73782440 -144254718 + AluSx SINE Alu 1 284 -28 585 64 0 0 chr3 73782440 73782518 -144254640 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 281 290 19 9 chr3 73783628 73783735 -144253423 + (TA)n Simple_repeat Simple_repeat 2 109 0 6720 144 46 6 chr3 73783735 73784917 -144252241 + Tigger3b DNA MER2_type 2 1230 -1 25 51 0 0 chr3 73785321 73785360 -144251798 + AT_rich Low_complexity Low_complexity 1 39 0 230 269 57 50 chr3 73785861 73786002 -144251156 - MER69 DNA AcHobo -442 2084 1943 1098 332 72 7 chr3 73786021 73786476 -144250682 - MER69 DNA AcHobo -718 508 24 209 184 0 0 chr3 73786683 73786721 -144250437 - L2 LINE L2 -14 3299 3262 251 376 79 41 chr3 73787109 73787476 -144249682 + L2 LINE L2 2891 3271 -1 217 244 0 0 chr3 73787641 73787686 -144249472 + (CATATA)n Simple_repeat Simple_repeat 4 48 0 309 104 0 0 chr3 73788296 73788344 -144248814 + MADE1 DNA Mariner 1 48 -32 321 65 22 0 chr3 73788372 73788418 -144248740 - MADE1 DNA Mariner -33 47 1 211 271 0 0 chr3 73789099 73789158 -144248000 + (CA)n Simple_repeat Simple_repeat 2 60 0 26 0 0 0 chr3 73789176 73789202 -144247956 + AT_rich Low_complexity Low_complexity 1 26 0 274 262 29 29 chr3 73789525 73789628 -144247530 + MIR SINE MIR 146 248 -14 332 273 61 0 chr3 73790015 73790114 -144247044 - L1ME LINE L1 -554 5608 5504 33 0 0 0 chr3 73791891 73791924 -144245234 + AT_rich Low_complexity Low_complexity 1 33 0 1741 147 77 34 chr3 73792384 73792737 -144244421 - LTR29 LTR ERV1 -254 368 1 237 208 21 0 chr3 73792737 73792785 -144244373 - MLT1G3 LTR MaLR -332 198 150 1880 157 7 3 chr3 73792792 73793097 -144244061 + AluSx SINE Alu 1 306 -6 238 260 128 73 chr3 73793151 73793439 -144243719 - L1ME LINE L1 -5760 310 7 458 319 128 32 chr3 73793451 73793733 -144243425 - L1MEd LINE L1 -5411 708 400 21 0 0 0 chr3 73793735 73793756 -144243402 + AT_rich Low_complexity Low_complexity 1 21 0 1993 230 34 4 chr3 73794074 73794547 -144242611 + L1MA7 LINE L1 5793 6279 -12 880 291 50 11 chr3 73794673 73794951 -144242207 + LTR16A1 LTR ERVL 169 457 0 2209 115 3 3 chr3 73795837 73796149 -144241009 - AluSq SINE Alu 0 313 2 21 36 0 0 chr3 73797509 73797537 -144239621 + AT_rich Low_complexity Low_complexity 1 28 0 2900 248 46 76 chr3 73797550 73798754 -144238404 + L1M4 LINE L1 3 1242 -5404 1855 198 28 3 chr3 73798754 73799108 -144238050 + MLT1A1 LTR MaLR 3 365 0 2900 248 46 76 chr3 73799108 73799928 -144237230 + L1M4 LINE L1 1242 1981 -4665 2511 157 19 2 chr3 73799928 73800355 -144236803 - MER57B LTR ERV1 0 434 1 2900 248 46 76 chr3 73800355 73800482 -144236676 + L1M4 LINE L1 1981 2110 -4536 536 232 61 10 chr3 73800508 73800600 -144236558 - L1M4c LINE L1 -4213 2171 2085 2172 116 48 22 chr3 73800600 73800955 -144236203 - THE1B LTR MaLR 0 364 1 536 232 61 10 chr3 73800955 73801060 -144236098 - L1M4c LINE L1 -4299 2085 1964 3505 265 66 20 chr3 73801073 73801822 -144235336 + L1M4 LINE L1 3359 4072 -2572 3770 133 46 50 chr3 73801822 73802516 -144234642 + LTR8 LTR ERV1 1 691 0 3505 265 66 20 chr3 73802516 73803308 -144233850 + L1M4 LINE L1 4072 4971 -1673 697 304 61 15 chr3 73803362 73803835 -144233323 + L1MD1 LINE L1 4266 4760 -1386 1240 238 67 9 chr3 73803838 73804217 -144232941 + L1MD1 LINE L1 5678 6077 -165 180 0 0 0 chr3 73804224 73804244 -144232914 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2092 141 0 0 chr3 73804250 73804547 -144232611 - AluSg SINE Alu -13 297 1 1999 147 0 0 chr3 73804565 73804864 -144232294 - AluSc SINE Alu -10 299 1 755 223 13 0 chr3 73804867 73805024 -144232134 - FRAM SINE Alu -16 160 2 666 176 21 28 chr3 73805026 73805168 -144231990 + L1MD1 LINE L1 6065 6205 -37 2361 194 63 8 chr3 73805168 73805647 -144231511 + MLT2B1 LTR ERVL 1 505 -15 242 120 0 40 chr3 73805652 73805702 -144231456 + L1MD1 LINE L1 6195 6242 0 1788 155 32 45 chr3 73805878 73806218 -144230940 + THE1C LTR MaLR 1 337 -38 2360 70 3 3 chr3 73806218 73806519 -144230639 - AluSp SINE Alu -12 301 1 1788 155 32 45 chr3 73806519 73806558 -144230600 + THE1C LTR MaLR 337 375 0 1321 342 82 40 chr3 73806580 73807970 -144229188 + ERVL LTR ERVL 1843 3291 -2473 651 259 99 44 chr3 73808586 73809219 -144227939 + L1M4 LINE L1 4117 4784 -1362 226 217 0 33 chr3 73809246 73809306 -144227852 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 1441 100 0 5 chr3 73809493 73809683 -144227475 + AluSg/x SINE Alu 114 302 -10 1874 172 72 5 chr3 73809816 73810217 -144226941 - MSTB1 LTR MaLR -4 428 1 253 144 19 144 chr3 73810336 73810440 -144226718 - L1MC4 LINE L1 -1338 6704 6614 1594 160 0 19 chr3 73810638 73810900 -144226258 + AluSx SINE Alu 45 301 -11 273 316 63 50 chr3 73811023 73811641 -144225517 + L1MEc LINE L1 1246 1816 -861 2074 122 0 3 chr3 73811713 73812008 -144225150 - AluSx SINE Alu -16 296 3 488 271 76 50 chr3 73812182 73812606 -144224552 + L1MEc LINE L1 2151 2547 -3668 276 375 36 0 chr3 73812719 73812970 -144224188 + L1P5 LINE L1 5294 5553 -598 25 65 0 0 chr3 73812974 73813020 -144224138 + AT_rich Low_complexity Low_complexity 1 46 0 845 275 15 8 chr3 73813132 73813411 -144223747 + L1ME3A LINE L1 5587 5865 -320 780 238 7 0 chr3 73813691 73813842 -144223316 + FAM SINE Alu 7 158 -27 309 51 0 0 chr3 73813843 73813882 -144223276 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 660 292 38 30 chr3 73814155 73814419 -144222739 + L1ME3A LINE L1 5838 6103 -67 349 249 205 32 chr3 73814527 73814834 -144222324 + MLT1I LTR MaLR 1 360 -49 394 131 41 0 chr3 73815878 73816000 -144221158 + (TA)n Simple_repeat Simple_repeat 2 128 0 1749 190 54 3 chr3 73816774 73817105 -144220053 - MER7A DNA MER2_type 0 346 1 338 298 57 48 chr3 73817128 73817356 -144219802 - LTR16C LTR ERVL -23 468 239 26 0 0 0 chr3 73817651 73817677 -144219481 + AT_rich Low_complexity Low_complexity 1 26 0 2002 144 0 3 chr3 73818049 73818354 -144218804 - AluSq SINE Alu -9 304 1 237 169 77 0 chr3 73818855 73818920 -144218238 + T-rich Low_complexity Low_complexity 2 71 0 2742 85 44 10 chr3 73818925 73819336 -144217822 - L1MA1 LINE L1 -4 6298 5874 193 333 91 45 chr3 73819858 73820101 -144217057 + L3 LINE CR1 1317 1570 -7 1129 220 4 8 chr3 73820193 73820429 -144216729 - MLT1A1 LTR MaLR -130 235 1 181 321 0 0 chr3 73821119 73821175 -144215983 - MER5A DNA MER1_type -2 187 132 22 35 0 0 chr3 73821820 73821849 -144215309 + AT_rich Low_complexity Low_complexity 1 29 0 221 167 0 0 chr3 73824063 73824105 -144213053 + (TTA)n Simple_repeat Simple_repeat 2 43 0 200 335 190 6 chr3 73824277 73824435 -144212723 - MER5A DNA MER1_type 0 189 3 231 324 14 0 chr3 73824474 73824545 -144212613 - L2 LINE L2 -556 2758 2687 2052 219 35 10 chr3 73824545 73825029 -144212129 + L1MC2 LINE L1 5838 6333 -11 401 359 55 55 chr3 73825868 73826250 -144210908 - L2 LINE L2 -2541 773 392 2142 111 7 0 chr3 73827970 73828277 -144208881 - AluY SINE Alu -2 309 1 539 299 65 37 chr3 73828443 73828660 -144208498 + MIR SINE MIR 28 250 -12 299 305 29 0 chr3 73828919 73829024 -144208134 + MIR SINE MIR 149 256 -6 1105 232 96 46 chr3 73830411 73830734 -144206424 - MSTD LTR MaLR -53 343 5 1479 110 9 0 chr3 73830787 73831006 -144206152 + THE1-int LTR MaLR 1360 1580 0 3225 157 19 7 chr3 73831044 73831939 -144205219 - L1P5 LINE L1 -376 5775 4871 419 241 0 0 chr3 73831961 73832048 -144205110 + L1PA15-16 LINE L1 1472 1558 -5291 * 1061 252 31 44 chr3 73832039 73832534 -144204624 + L1PB4 LINE L1 1336 1921 -4928 1456 236 18 27 chr3 73832540 73832980 -144204178 + L1PB4 LINE L1 1811 2246 -4603 4321 247 27 12 chr3 73832995 73834268 -144202890 + L1PB4 LINE L1 2824 4115 -2734 * 4413 178 126 14 chr3 73834242 73835767 -144201391 + L1PB4 LINE L1 5132 6856 -3 559 200 0 0 chr3 73835797 73835907 -144201251 + L1 LINE L1 4563 4672 -1474 277 158 18 0 chr3 73835909 73835966 -144201192 + L1P LINE L1 5297 5354 -807 228 222 25 12 chr3 73836242 73836323 -144200835 + (TA)n Simple_repeat Simple_repeat 2 83 0 22 56 0 0 chr3 73836895 73836931 -144200227 + AT_rich Low_complexity Low_complexity 1 36 0 2025 118 0 7 chr3 73837465 73837762 -144199396 + AluSx SINE Alu 9 303 -9 1243 248 12 34 chr3 73838034 73838361 -144198797 + MLT1A1 LTR MaLR 34 353 -12 219 369 14 21 chr3 73839051 73839192 -144197966 + L2 LINE L2 163 302 -3012 224 122 24 0 chr3 73839661 73839702 -144197456 + (TA)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr3 73840279 73840300 -144196858 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 73840689 73840710 -144196448 + AT_rich Low_complexity Low_complexity 1 21 0 214 232 183 37 chr3 73841975 73842057 -144195101 - MIR3 SINE MIR -9 199 106 777 317 90 66 chr3 73842173 73842237 -144194921 - L2 LINE L2 -38 3275 3214 2450 37 0 14 chr3 73842237 73842532 -144194626 + AluY SINE Alu 4 294 -17 777 317 90 66 chr3 73842532 73842543 -144194615 - L2 LINE L2 -99 3214 3205 1877 112 92 42 chr3 73842543 73842900 -144194258 + THE1C LTR MaLR 1 375 0 777 317 90 66 chr3 73842900 73843469 -144193689 - L2 LINE L2 -108 3205 2618 1296 337 65 22 chr3 73843471 73844183 -144192975 - L2 LINE L2 -1008 2306 1565 203 179 0 0 chr3 73844355 73844394 -144192764 + (TTA)n Simple_repeat Simple_repeat 2 40 0 218 344 0 22 chr3 73845149 73845239 -144191919 - L2 LINE L2 -1 3312 3225 759 188 6 6 chr3 73845410 73845575 -144191583 - L1 LINE L1 -2338 3808 3644 * 5778 215 30 20 chr3 73845572 73847019 -144190139 + L1 LINE L1 3800 5260 -886 185 65 32 0 chr3 73848014 73848045 -144189113 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 240 214 0 0 chr3 73848077 73848133 -144189025 + GA-rich Low_complexity Low_complexity 2 57 0 21 0 0 0 chr3 73848286 73848307 -144188851 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 73849677 73849699 -144187459 + AT_rich Low_complexity Low_complexity 1 22 0 249 83 0 0 chr3 73849759 73849795 -144187363 + (CCAA)n Simple_repeat Simple_repeat 1 36 0 444 332 5 15 chr3 73850568 73850764 -144186394 - L1MEc LINE L1 -6174 222 29 1055 320 49 37 chr3 73850862 73851855 -144185303 - L1MCc LINE L1 -4887 1536 972 229 327 36 18 chr3 73851975 73852085 -144185073 - L1MCc LINE L1 -5317 1106 995 * 1140 303 67 7 chr3 73852053 73852485 -144184673 - L1MCc LINE L1 -5949 474 17 303 377 83 23 chr3 73852780 73853130 -144184028 - L1MEc LINE L1 -5832 564 194 4735 133 17 25 chr3 73853169 73853937 -144183221 - MER4E LTR ERV1 0 779 18 3229 88 9 2 chr3 73854012 73854453 -144182705 - MLT2A1 LTR ERVL 0 444 1 183 355 169 16 chr3 73856630 73856754 -144180404 - MIR SINE MIR -119 143 1 471 317 27 58 chr3 73859340 73859599 -144177559 + MIR SINE MIR 2 252 -10 23 0 0 0 chr3 73859719 73859742 -144177416 + AT_rich Low_complexity Low_complexity 1 23 0 537 274 137 66 chr3 73859989 73860331 -144176827 - HAL1 LINE L1 -1333 1174 795 7341 33 7 0 chr3 73860331 73861996 -144175162 - L1PA4 LINE L1 -4 6151 4481 537 274 137 66 chr3 73861996 73862076 -144175082 - HAL1 LINE L1 -1712 795 722 328 292 21 10 chr3 73862236 73862332 -144174826 - HAL1 LINE L1 -1993 514 418 824 291 64 24 chr3 73862417 73862963 -144174195 + L1M4 LINE L1 2658 3225 -2921 301 304 137 12 chr3 73862971 73863139 -144174019 + L1M4 LINE L1 3341 3529 -2617 562 268 93 39 chr3 73863150 73863767 -144173391 + L1M4 LINE L1 3665 4350 -1796 537 175 24 63 chr3 73863779 73863905 -144173253 + AluSg/x SINE Alu 120 240 -72 26 50 0 0 chr3 73864398 73864438 -144172720 + AT_rich Low_complexity Low_complexity 1 40 0 24 85 0 0 chr3 73864798 73864857 -144172301 + AT_rich Low_complexity Low_complexity 1 59 0 485 271 52 58 chr3 73865916 73866263 -144170895 + Zaphod DNA AcHobo 3497 3841 -190 2201 89 0 0 chr3 73866324 73866605 -144170553 + AluY SINE Alu 1 281 -30 195 69 0 0 chr3 73866608 73866637 -144170521 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1262 125 0 0 chr3 73866643 73866827 -144170331 + AluSg/x SINE Alu 129 312 0 379 256 64 8 chr3 73866847 73866972 -144170186 + L1MD2 LINE L1 1581 1712 -4828 426 230 50 7 chr3 73866985 73867124 -144170034 + L1MD2 LINE L1 1857 2001 -4539 4088 259 72 68 chr3 73867127 73868130 -144169028 + L1MD2 LINE L1 2768 3766 -2774 20368 92 2 6 chr3 73868130 73871807 -144165351 + L1PA7 LINE L1 2460 6140 -14 4088 259 72 68 chr3 73871807 73873586 -144163572 + L1MD2 LINE L1 3766 5561 -979 2008 267 59 17 chr3 73873635 73874347 -144162811 + L1MD2 LINE L1 5792 6533 -220 554 133 0 19 chr3 73874528 73874633 -144162525 + (GGGA)n Simple_repeat Simple_repeat 3 105 0 202 206 0 0 chr3 73875557 73875591 -144161567 + polypurine Low_complexity Low_complexity 1 34 0 1112 47 0 0 chr3 73875596 73875723 -144161435 + AluY SINE Alu 6 132 -179 2206 65 7 0 chr3 73875726 73876019 -144161139 + AluSx SINE Alu 1 295 -17 248 0 31 0 chr3 73876032 73876064 -144161094 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 283 414 54 0 chr3 73876122 73876308 -144160850 + L2 LINE L2 2873 3068 -245 23 54 0 0 chr3 73876666 73876703 -144160455 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr3 73877047 73877071 -144160087 + AT_rich Low_complexity Low_complexity 1 24 0 430 230 14 20 chr3 73879581 73879729 -144157429 + (TATATG)n Simple_repeat Simple_repeat 2 148 0 420 325 26 7 chr3 73879740 73879894 -144157264 - MIR SINE MIR -85 177 21 286 228 0 26 chr3 73880038 73880152 -144157006 + GA-rich Low_complexity Low_complexity 3 113 0 864 178 0 0 chr3 73880188 73880368 -144156790 + GA-rich Low_complexity Low_complexity 1 180 0 1065 126 0 0 chr3 73880379 73880554 -144156604 + (GGAA)n Simple_repeat Simple_repeat 4 178 0 1927 119 4 4 chr3 73880902 73881180 -144155978 - AluSc SINE Alu -31 278 1 31 0 0 0 chr3 73881430 73881461 -144155697 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr3 73881719 73881748 -144155410 + AT_rich Low_complexity Low_complexity 1 29 0 1157 86 0 0 chr3 73881812 73881963 -144155195 + AluSc SINE Alu 157 307 -2 24 0 0 0 chr3 73882399 73882423 -144154735 + AT_rich Low_complexity Low_complexity 1 24 0 292 357 16 8 chr3 73882882 73883011 -144154147 + MIR SINE MIR 65 194 -68 1793 213 19 8 chr3 73883520 73883881 -144153277 - MLT1A1 LTR MaLR 0 365 1 763 312 116 48 chr3 73884175 73884794 -144152364 + L2 LINE L2 2665 3313 0 22 70 0 0 chr3 73886067 73886110 -144151048 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr3 73886262 73886291 -144150867 + AT_rich Low_complexity Low_complexity 1 29 0 1648 161 60 0 chr3 73886490 73886809 -144150349 + AluSx SINE Alu 1 335 0 1797 86 43 0 chr3 73887415 73887672 -144149486 - L1PA7 LINE L1 -789 5357 5090 5809 68 0 43 chr3 73887672 73888497 -144148661 + L1PA7 LINE L1 5359 6149 -5 1644 203 49 6 chr3 73889062 73889407 -144147751 - MLT-int LTR MaLR -1316 419 60 180 345 127 9 chr3 73890018 73890128 -144147030 + L2 LINE L2 3187 3309 -4 300 53 0 0 chr3 73890261 73890299 -144146859 + (CA)n Simple_repeat Simple_repeat 1 38 0 1796 120 11 14 chr3 73892971 73893276 -144143882 - AluSq SINE Alu 0 304 1 1304 61 6 0 chr3 73893481 73893688 -144143470 - AluY SINE Alu 0 327 120 197 293 24 24 chr3 73893848 73893930 -144143228 + MIR SINE MIR 175 256 -6 265 145 0 58 chr3 73894446 73894515 -144142643 - MLT2B1 LTR ERVL 0 520 456 253 60 80 0 chr3 73894517 73894567 -144142591 + GA-rich Low_complexity Low_complexity 3 56 0 1837 204 13 11 chr3 73894567 73894949 -144142209 - MLT2D LTR ERVL -21 533 1 24 0 0 0 chr3 73896202 73896226 -144140932 + AT_rich Low_complexity Low_complexity 1 24 0 257 376 10 10 chr3 73896391 73896492 -144140666 + MIR SINE MIR 2 102 -160 192 77 0 0 chr3 73896714 73896740 -144140418 + (TA)n Simple_repeat Simple_repeat 2 27 0 204 158 0 0 chr3 73897414 73897452 -144139706 + (TATG)n Simple_repeat Simple_repeat 3 40 0 21 0 0 0 chr3 73897482 73897503 -144139655 + AT_rich Low_complexity Low_complexity 1 21 0 2298 79 0 20 chr3 73897746 73898051 -144139107 - AluY SINE Alu -12 299 1 25 31 0 0 chr3 73898327 73898359 -144138799 + AT_rich Low_complexity Low_complexity 1 32 0 1201 126 23 42 chr3 73898572 73898787 -144138371 - LTR8 LTR ERV1 -108 583 373 7612 26 0 0 chr3 73898830 73899754 -144137404 - L1PA2 LINE L1 -1 6154 5230 433 220 10 10 chr3 73899763 73899863 -144137295 - U3 snRNA snRNA -42 175 76 21 82 0 0 chr3 73900851 73900900 -144136258 + AT_rich Low_complexity Low_complexity 1 49 0 31 26 0 0 chr3 73901043 73901081 -144136077 + AT_rich Low_complexity Low_complexity 1 38 0 348 296 53 42 chr3 73901683 73901872 -144135286 + MLT1J2 LTR MaLR 26 216 -234 288 0 0 0 chr3 73902630 73902662 -144134496 + (CA)n Simple_repeat Simple_repeat 2 33 0 269 387 34 10 chr3 73903636 73903840 -144133318 - HAL1 LINE L1 -1791 716 508 2553 30 0 3 chr3 73903917 73904217 -144132941 - AluY SINE Alu -12 299 1 792 115 23 23 chr3 73904583 73904713 -144132445 - L1PA11 LINE L1 -11 6163 6034 24 32 0 0 chr3 73904739 73904770 -144132388 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr3 73905165 73905194 -144131964 + AT_rich Low_complexity Low_complexity 1 29 0 13085 156 29 15 chr3 73905403 73907782 -144129376 - Tigger1 DNA MER2_type -4 2414 2 8156 66 6 16 chr3 73907782 73908864 -144128294 - MER11C LTR ERVK 0 1071 1 3268 252 76 50 chr3 73909792 73911531 -144125627 + L1M4b LINE L1 47 1893 -4962 2131 128 0 3 chr3 73911531 73911843 -144125315 + AluY SINE Alu 1 311 0 3268 252 76 50 chr3 73911843 73911979 -144125179 + L1M4b LINE L1 1893 2024 -4831 1105 190 63 121 chr3 73912180 73912632 -144124526 - MLT2D LTR ERVL -2 518 39 2162 160 3 21 chr3 73913847 73914234 -144122924 - MLT1B LTR MaLR 0 390 11 277 289 52 69 chr3 73914641 73914814 -144122344 - L2 LINE L2 -424 2890 2721 1533 200 74 67 chr3 73915185 73915598 -144121560 + MLT1C LTR MaLR 34 467 0 189 0 0 0 chr3 73915776 73915797 -144121361 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 23 0 0 0 chr3 73916009 73916032 -144121126 + AT_rich Low_complexity Low_complexity 1 23 0 1648 225 58 48 chr3 73916163 73916678 -144120480 + MLT2B1 LTR ERVL 1 520 0 225 196 0 0 chr3 73916722 73916768 -144120390 + (TATG)n Simple_repeat Simple_repeat 3 48 0 26 30 0 0 chr3 73916952 73916985 -144120173 + AT_rich Low_complexity Low_complexity 1 33 0 2346 94 3 0 chr3 73917001 73917310 -144119848 + AluSx SINE Alu 1 310 -2 249 159 0 0 chr3 73918466 73918510 -144118648 + (CATATA)n Simple_repeat Simple_repeat 5 48 0 246 180 33 0 chr3 73918515 73918576 -144118582 - L1MC4 LINE L1 -1339 6703 6641 377 335 94 17 chr3 73918693 73919108 -144118050 + L1MC4a LINE L1 5383 5829 -1979 252 299 37 37 chr3 73919162 73919296 -144117862 + L1MC4a LINE L1 5825 5958 -1850 252 246 0 0 chr3 73919300 73919369 -144117789 + (TA)n Simple_repeat Simple_repeat 2 70 0 1883 126 43 40 chr3 73919944 73920318 -144116840 + THE1C LTR MaLR 1 375 0 528 292 62 27 chr3 73920436 73920714 -144116444 + MLT1G LTR MaLR 7 297 -293 254 281 50 33 chr3 73921265 73921386 -144115772 + MLT1-int LTR MaLR 419 541 -830 461 173 0 0 chr3 73921753 73921828 -144115330 - Tigger1 DNA MER2_type -2114 304 230 245 207 35 0 chr3 73921869 73921927 -144115231 + GA-rich Low_complexity Low_complexity 1 60 0 245 262 62 157 chr3 73922072 73922396 -144114762 + MLT1-int LTR MaLR 1038 1330 -41 407 181 0 0 chr3 73922562 73922642 -144114516 + AluJ/FLAM SINE Alu 5 70 -232 237 180 0 0 chr3 73922619 73922669 -144114489 + Alu SINE Alu 253 302 0 * 1751 221 81 12 chr3 73922860 73923290 -144113868 - MLT1D LTR MaLR -3 502 43 337 277 114 50 chr3 73923351 73923571 -144113587 + MLT1G LTR MaLR 304 537 -5 974 292 62 43 chr3 73924700 73925231 -144111927 - MLT1F LTR MaLR 0 542 2 2526 89 20 0 chr3 73925920 73926268 -144110890 + THE1A LTR MaLR 1 355 0 11200 104 11 1 chr3 73926268 73927832 -144109326 + THE1A-int LTR MaLR 1 1580 0 2488 110 3 3 chr3 73927832 73928187 -144108971 + THE1A LTR MaLR 1 355 0 311 296 79 15 chr3 73929139 73929356 -144107802 - MLT1E3 LTR MaLR -4 589 334 899 53 0 9 chr3 73929358 73929471 -144107687 - THE1A LTR MaLR -243 112 1 584 74 95 0 chr3 73929471 73929548 -144107610 - THE1A-int LTR MaLR 0 1580 1491 216 0 0 0 chr3 73929548 73929572 -144107586 + (CTAA)n Simple_repeat Simple_repeat 1 24 0 584 74 95 0 chr3 73929572 73929589 -144107569 - THE1A-int LTR MaLR -89 1491 1477 373 313 64 52 chr3 73929589 73929822 -144107336 - MLT1E3 LTR MaLR -249 375 140 214 321 48 12 chr3 73930845 73930929 -144106229 + L2 LINE L2 1707 1793 -1521 1645 212 120 58 chr3 73931319 73931942 -144105216 + L1MDb LINE L1 831 1492 -5051 213 39 0 0 chr3 73931942 73931968 -144105190 + (GAAAA)n Simple_repeat Simple_repeat 2 27 0 350 256 47 110 chr3 73931968 73932091 -144105067 + L1MDb LINE L1 1450 1551 -4989 2383 30 0 0 chr3 73932091 73932404 -144104754 + AluY SINE Alu 1 280 -31 350 256 47 110 chr3 73932404 73932533 -144104625 + L1MDb LINE L1 1551 1687 -4853 1933 153 123 8 chr3 73932533 73932899 -144104259 + MSTA LTR MaLR 21 428 0 1681 232 111 20 chr3 73932899 73933538 -144103620 + L1MDb LINE L1 1678 2374 -4166 2221 222 29 0 chr3 73933590 73934068 -144103090 + L1MD1 LINE L1 5705 6196 -46 2854 113 2 5 chr3 73934721 73935154 -144102004 + L1PB1 LINE L1 5360 5791 -360 291 215 0 0 chr3 73935154 73935219 -144101939 + (CATA)n Simple_repeat Simple_repeat 3 67 0 2375 101 14 0 chr3 73935236 73935581 -144101577 + L1PB1 LINE L1 5785 6134 -17 227 130 0 22 chr3 73937645 73937691 -144099467 + (TA)n Simple_repeat Simple_repeat 2 46 0 307 267 11 11 chr3 73937700 73937790 -144099368 + L1MC4 LINE L1 6614 6703 -1339 302 196 33 65 chr3 73937810 73937902 -144099256 - L1MC4 LINE L1 -1339 6703 6615 1115 200 5 0 chr3 73938204 73938414 -144098744 + MER2 DNA MER2_type 1 211 -134 21 36 0 0 chr3 73938531 73938559 -144098599 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr3 73939214 73939257 -144097901 + AT_rich Low_complexity Low_complexity 1 43 0 454 282 130 46 chr3 73939707 73939991 -144097167 + MLT1I LTR MaLR 102 409 0 227 261 15 0 chr3 73940650 73940715 -144096443 + MER103 DNA DNA 49 114 -52 2284 149 16 3 chr3 73940732 73941102 -144096056 + THE1C LTR MaLR 1 375 0 9005 141 49 3 chr3 73941102 73942609 -144094549 + THE1C-int LTR MaLR 1 1576 -4 2328 120 25 5 chr3 73942613 73942981 -144094177 + THE1C LTR MaLR 1 375 0 25 0 0 0 chr3 73943178 73943203 -144093955 + AT_rich Low_complexity Low_complexity 1 25 0 278 336 28 49 chr3 73943237 73943380 -144093778 + MIR SINE MIR 14 153 -109 2361 92 7 0 chr3 73943382 73943686 -144093472 + AluSx SINE Alu 1 306 -6 217 234 16 0 chr3 73943717 73943781 -144093377 + (TG)n Simple_repeat Simple_repeat 1 65 0 29 47 0 0 chr3 73945004 73945047 -144092111 + AT_rich Low_complexity Low_complexity 1 43 0 229 242 32 0 chr3 73945975 73946070 -144091088 + GA-rich Low_complexity Low_complexity 3 100 0 417 302 84 23 chr3 73946388 73946603 -144090555 - MIR SINE MIR -15 247 20 337 323 21 48 chr3 73948737 73948926 -144088232 + MIR SINE MIR 61 244 -18 288 349 37 18 chr3 73948932 73949041 -144088117 - MIR3 SINE MIR -44 164 54 181 296 122 35 chr3 73949130 73949245 -144087913 - L2 LINE L2 -14 3299 3175 2155 98 10 3 chr3 73952328 73952623 -144084535 + AluSq SINE Alu 1 297 -16 2443 65 0 0 chr3 73952660 73952966 -144084192 + AluY SINE Alu 1 306 -5 207 194 48 0 chr3 73953059 73953121 -144084037 + (TA)n Simple_repeat Simple_repeat 2 66 0 1192 255 43 9 chr3 73953356 73953705 -144083453 - MLT1A1 LTR MaLR -2 363 3 1336 192 133 16 chr3 73953718 73954041 -144083117 + MER46B DNA MER2_type 1 236 0 243 190 0 0 chr3 73954404 73954462 -144082696 + (TG)n Simple_repeat Simple_repeat 1 58 0 188 341 12 12 chr3 73954940 73955022 -144082136 + MER5A DNA MER1_type 36 117 -72 30 0 0 0 chr3 73955156 73955186 -144081972 + AT_rich Low_complexity Low_complexity 1 30 0 297 277 92 28 chr3 73955337 73955478 -144081680 - L2 LINE L2 0 3313 3164 1882 188 84 27 chr3 73955799 73956277 -144080881 - MLT1D LTR MaLR 0 505 1 778 280 47 0 chr3 73956411 73956625 -144080533 - MER58A DNA MER1_type 0 224 1 2517 39 0 7 chr3 73957228 73957538 -144079620 - L1PA4 LINE L1 -3 6152 5845 26 30 0 0 chr3 73957560 73957593 -144079565 + AT_rich Low_complexity Low_complexity 1 33 0 2381 92 0 0 chr3 73957609 73957915 -144079243 + AluSx SINE Alu 1 306 -6 34 55 0 0 chr3 73960665 73960720 -144076438 + AT_rich Low_complexity Low_complexity 1 55 0 21 36 0 0 chr3 73960884 73960912 -144076246 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr3 73961523 73961548 -144075610 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr3 73961678 73961701 -144075457 + AT_rich Low_complexity Low_complexity 1 23 0 240 122 0 0 chr3 73961914 73961955 -144075203 + (TC)n Simple_repeat Simple_repeat 1 41 0 251 219 10 31 chr3 73962525 73962621 -144074537 + (TTATA)n Simple_repeat Simple_repeat 4 97 0 24 0 0 0 chr3 73962805 73962829 -144074329 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr3 73963088 73963116 -144074042 + AT_rich Low_complexity Low_complexity 1 28 0 246 266 0 0 chr3 73963553 73963617 -144073541 + GA-rich Low_complexity Low_complexity 1 64 0 23 0 0 0 chr3 73964234 73964257 -144072901 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 73964355 73964376 -144072782 + AT_rich Low_complexity Low_complexity 1 21 0 520 92 13 0 chr3 73964390 73964466 -144072692 - L1MA1 LINE L1 -22 6280 6204 * 7950 155 32 29 chr3 73964459 73964972 -144072186 - L1MA1 LINE L1 -382 5920 5410 2253 98 0 13 chr3 73964972 73965288 -144071870 - AluSx SINE Alu 0 312 1 7950 155 32 29 chr3 73965288 73966910 -144070248 - L1MA1 LINE L1 -892 5410 3764 1593 207 10 3 chr3 73966914 73967219 -144069939 - AluJb SINE Alu -5 307 1 194 233 0 0 chr3 73968271 73968314 -144068844 + MIR SINE MIR 104 146 -116 188 227 23 0 chr3 73968348 73968392 -144068766 + MIR SINE MIR 218 262 0 464 123 47 29 chr3 73968618 73968788 -144068370 + (TA)n Simple_repeat Simple_repeat 1 173 0 344 117 56 50 chr3 73968802 73968981 -144068177 + (TA)n Simple_repeat Simple_repeat 1 180 0 388 253 136 30 chr3 73969395 73969593 -144067565 - L2 LINE L2 0 3313 3095 300 335 58 40 chr3 73970955 73971189 -144065969 - HAL1 LINE L1 -2083 424 183 2233 216 43 53 chr3 73971189 73971772 -144065386 - MER70B LTR ERVL 0 578 2 300 335 58 40 chr3 73971772 73971815 -144065343 - HAL1 LINE L1 -2324 183 142 23 54 0 0 chr3 73972383 73972420 -144064738 + AT_rich Low_complexity Low_complexity 1 37 0 26 50 0 0 chr3 73972505 73972545 -144064613 + AT_rich Low_complexity Low_complexity 1 40 0 415 309 26 26 chr3 73973786 73973980 -144063178 + LTR16B LTR ERVL 106 299 -165 297 278 66 13 chr3 73974825 73974976 -144062182 - L1M4 LINE L1 -3484 2662 2504 599 263 114 4 chr3 73975215 73975443 -144061715 - LTR33 LTR ERVL -8 513 261 2592 193 25 16 chr3 73975640 73975965 -144061193 - L1 LINE L1 -2027 4119 3784 2082 99 0 14 chr3 73975965 73976288 -144060870 - AluSc SINE Alu 0 319 1 2592 193 25 16 chr3 73976288 73976510 -144060648 - L1 LINE L1 -2362 3784 3566 4175 205 24 33 chr3 73976520 73977649 -144059509 + L1PB4 LINE L1 4558 5696 -460 2238 135 25 8 chr3 73977649 73978005 -144059153 - THE1B LTR MaLR -2 362 1 9846 126 28 27 chr3 73978005 73979583 -144057575 - THE1B-int LTR MaLR 0 1580 1 2311 139 19 6 chr3 73979583 73979942 -144057216 - THE1B LTR MaLR 0 364 1 4175 205 24 33 chr3 73979942 73980430 -144056728 + L1PB4 LINE L1 5693 6156 0 277 380 20 27 chr3 73980865 73981015 -144056143 - MER5A DNA MER1_type -23 166 18 27 29 0 0 chr3 73981171 73981205 -144055953 + AT_rich Low_complexity Low_complexity 1 34 0 1831 135 44 50 chr3 73981223 73981564 -144055594 - Tigger3b DNA MER2_type 0 1231 893 2294 138 50 9 chr3 73981566 73982009 -144055149 - Tigger3b DNA MER2_type -497 734 274 570 208 0 0 chr3 73982007 73982103 -144055055 - Tigger3b DNA MER2_type -1129 102 7 * 30332 118 11 58 chr3 73982552 73987095 -144050063 + L1PA7 LINE L1 14 4154 -2000 2027 143 7 0 chr3 73987095 73987402 -144049756 + AluSp SINE Alu 3 311 -2 30332 118 11 58 chr3 73987402 73989311 -144047847 + L1PA7 LINE L1 4154 6151 -3 25 51 0 0 chr3 73989399 73989438 -144047720 + AT_rich Low_complexity Low_complexity 1 39 0 1888 153 10 3 chr3 73990315 73990616 -144046542 - AluSx SINE Alu -7 305 3 21 0 0 0 chr3 73992016 73992037 -144045121 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr3 73992358 73992391 -144044767 + (TG)n Simple_repeat Simple_repeat 2 34 0 444 320 79 32 chr3 73993835 73994113 -144043045 - L2 LINE L2 0 3313 3023 23 0 0 0 chr3 73994292 73994315 -144042843 + AT_rich Low_complexity Low_complexity 1 23 0 975 72 0 7 chr3 73994933 73995072 -144042086 + L1MA3 LINE L1 6166 6303 -2 222 246 0 31 chr3 73995220 73995285 -144041873 + (TATATG)n Simple_repeat Simple_repeat 6 68 0 2240 126 42 6 chr3 73995695 73996053 -144041105 + THE1C LTR MaLR 1 371 -4 27 29 0 0 chr3 73996907 73996941 -144040217 + AT_rich Low_complexity Low_complexity 1 34 0 22 56 0 0 chr3 73997315 73997351 -144039807 + AT_rich Low_complexity Low_complexity 1 36 0 207 0 0 0 chr3 73997682 73997705 -144039453 + (TA)n Simple_repeat Simple_repeat 2 24 0 1658 50 5 27 chr3 73997705 73997927 -144039231 - L1PA7 LINE L1 -25 6129 5913 192 40 0 0 chr3 73998378 73998403 -144038755 + (CA)n Simple_repeat Simple_repeat 2 26 0 2046 145 0 0 chr3 73998520 73998830 -144038328 - AluSg SINE Alu 0 310 1 8971 191 19 8 chr3 73998884 74000605 -144036553 - L1PB1 LINE L1 0 6151 4384 380 71 18 0 chr3 74000605 74000661 -144036497 + (TA)n Simple_repeat Simple_repeat 2 58 0 8971 191 19 8 chr3 74000661 74001829 -144035329 - L1PB1 LINE L1 -1767 4384 3230 269 146 0 0 chr3 74001829 74001870 -144035288 - LTR3b LTR ERVK 0 500 460 2156 148 9 6 chr3 74001871 74002209 -144034949 - LTR3b LTR ERVK -4 496 158 735 180 31 5 chr3 74002220 74002414 -144034744 - L1PB1 LINE L1 -2911 3235 3037 21 0 0 0 chr3 74002466 74002487 -144034671 + AT_rich Low_complexity Low_complexity 1 21 0 2216 76 7 33 chr3 74003423 74003726 -144033432 + AluY SINE Alu 1 295 -16 21 0 0 0 chr3 74003729 74003750 -144033408 + AT_rich Low_complexity Low_complexity 1 21 0 3655 204 24 28 chr3 74004976 74006413 -144030745 + L1MC1 LINE L1 4500 5923 -410 588 202 0 21 chr3 74006413 74006590 -144030568 - MER8 DNA MER2_type 0 239 1 1856 192 45 5 chr3 74006590 74006986 -144030172 + L1MC1 LINE L1 5922 6333 0 29 28 0 0 chr3 74007010 74007046 -144030112 + AT_rich Low_complexity Low_complexity 1 36 0 1346 134 9 5 chr3 74008377 74008593 -144028565 + L1PA7 LINE L1 5937 6153 -1 465 123 0 14 chr3 74008696 74008769 -144028389 - L1PB4 LINE L1 -12 6144 6073 1629 202 70 6 chr3 74009228 74009365 -144027793 + MLT1A1 LTR MaLR 1 128 -237 2079 122 0 3 chr3 74009365 74009675 -144027483 + AluSx SINE Alu 1 312 0 1629 202 70 6 chr3 74009675 74009878 -144027280 + MLT1A1 LTR MaLR 128 363 -2 213 376 9 18 chr3 74010614 74010723 -144026435 - L3b LINE CR1 -206 1377 1270 245 311 147 38 chr3 74011321 74011559 -144025599 - L2 LINE L2 -34 3279 3016 192 40 0 0 chr3 74011605 74011630 -144025528 + (CA)n Simple_repeat Simple_repeat 2 26 0 462 18 0 0 chr3 74012324 74012379 -144024779 + (TG)n Simple_repeat Simple_repeat 2 56 0 5860 225 146 32 chr3 74012885 74014460 -144022698 + MER52A LTR ERV1 1 1755 0 261 250 139 65 chr3 74015387 74015495 -144021663 - L2 LINE L2 -2 3311 3196 1536 223 29 21 chr3 74015668 74016045 -144021113 + MLT1B LTR MaLR 11 390 0 1003 242 162 52 chr3 74016067 74016357 -144020801 + MLT1D LTR MaLR 27 380 -125 1811 137 52 24 chr3 74016357 74016685 -144020473 - MER1B DNA MER1_type 0 337 1 1003 242 162 52 chr3 74016685 74016820 -144020338 + MLT1D LTR MaLR 380 499 -6 180 405 44 6 chr3 74017418 74017576 -144019582 - MIR3 SINE MIR -12 196 33 232 365 59 0 chr3 74017780 74017865 -144019293 + MIR3 SINE MIR 2 91 -117 182 333 0 0 chr3 74017885 74017945 -144019213 + MIR SINE MIR 64 123 -85 303 28 0 0 chr3 74018834 74018870 -144018288 + (TA)n Simple_repeat Simple_repeat 1 36 0 279 0 0 0 chr3 74018869 74018900 -144018258 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 22 35 0 0 chr3 74019660 74019689 -144017469 + AT_rich Low_complexity Low_complexity 1 29 0 28 61 0 0 chr3 74019744 74019793 -144017365 + AT_rich Low_complexity Low_complexity 1 49 0 524 168 0 20 chr3 74019935 74020036 -144017122 + L1PA16 LINE L1 6068 6166 0 1911 135 14 0 chr3 74021341 74021630 -144015528 - AluSc SINE Alu -6 303 11 236 200 15 0 chr3 74021701 74021766 -144015392 + (TA)n Simple_repeat Simple_repeat 1 66 0 210 171 0 0 chr3 74022158 74022199 -144014959 + (TA)n Simple_repeat Simple_repeat 1 41 0 * 288 143 0 0 chr3 74022198 74022254 -144014904 + (CA)n Simple_repeat Simple_repeat 2 57 0 2070 116 14 0 chr3 74022822 74023114 -144014044 - AluSx SINE Alu -16 296 1 21 0 0 0 chr3 74024180 74024201 -144012957 + AT_rich Low_complexity Low_complexity 1 21 0 1902 197 33 7 chr3 74026855 74027277 -144009881 - L1MA6 LINE L1 -9 6291 5859 235 225 0 45 chr3 74027315 74027404 -144009754 + C-rich Low_complexity Low_complexity 1 85 0 189 273 0 26 chr3 74027458 74027612 -144009546 + CT-rich Low_complexity Low_complexity 1 150 0 * 279 114 0 0 chr3 74027577 74027621 -144009537 + (C)n Simple_repeat Simple_repeat 1 44 0 344 364 0 14 chr3 74027629 74027769 -144009389 + C-rich Low_complexity Low_complexity 1 138 0 29 28 0 0 chr3 74027907 74027943 -144009215 + AT_rich Low_complexity Low_complexity 1 36 0 291 263 31 34 chr3 74028219 74028382 -144008776 - L1ME LINE L1 -677 5485 5324 314 180 27 15 chr3 74028803 74028890 -144008268 - L1MC/D LINE L1 -370 5796 5713 327 301 42 48 chr3 74028977 74029143 -144008015 - L2 LINE L2 -9 3304 3140 433 262 106 42 chr3 74029177 74029367 -144007791 + L1ME2 LINE L1 5782 5987 -177 37 23 0 0 chr3 74029391 74029435 -144007723 + AT_rich Low_complexity Low_complexity 1 44 0 28 86 0 0 chr3 74029555 74029625 -144007533 + AT_rich Low_complexity Low_complexity 1 70 0 2026 104 4 0 chr3 74029642 74029957 -144007201 - AluSc SINE Alu 0 316 1 315 0 0 0 chr3 74031267 74031302 -144005856 + (CA)n Simple_repeat Simple_repeat 2 36 0 293 214 0 0 chr3 74031644 74031700 -144005458 + MER3 DNA MER1_type 47 102 -107 1225 206 48 6 chr3 74031751 74032086 -144005072 + MER3 DNA MER1_type 2234 2582 0 182 298 0 18 chr3 74032407 74032464 -144004694 - MIR SINE MIR -75 187 132 249 339 18 18 chr3 74032496 74032608 -144004550 - L2 LINE L2 -3 3310 3199 232 243 29 0 chr3 74034947 74035017 -144002141 + (TTAA)n Simple_repeat Simple_repeat 3 74 0 1845 193 30 0 chr3 74035480 74035842 -144001316 + L1PB4 LINE L1 5783 6155 -1 242 250 0 0 chr3 74037783 74037843 -143999315 + CT-rich Low_complexity Low_complexity 1 60 0 21 36 0 0 chr3 74038284 74038312 -143998846 + AT_rich Low_complexity Low_complexity 1 28 0 21 43 0 0 chr3 74038570 74038593 -143998565 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 74038774 74038796 -143998362 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 74038847 74038868 -143998290 + AT_rich Low_complexity Low_complexity 1 21 0 279 379 0 16 chr3 74039972 74040154 -143997004 + C-rich Low_complexity Low_complexity 1 179 0 235 247 0 31 chr3 74040209 74040306 -143996852 + C-rich Low_complexity Low_complexity 4 97 0 257 253 33 11 chr3 74040945 74041036 -143996122 + (TA)n Simple_repeat Simple_repeat 2 94 0 24 0 0 0 chr3 74041670 74041694 -143995464 + AT_rich Low_complexity Low_complexity 1 24 0 1930 146 116 30 chr3 74042019 74042424 -143994734 - LTR4 LTR ERV1 -156 440 1 8534 141 22 114 chr3 74042430 74042790 -143994368 + Tigger1 DNA MER2_type 573 965 -1453 3703 106 87 2 chr3 74042790 74043375 -143993783 + MER41B LTR ERV1 1 635 0 8534 141 22 114 chr3 74043375 74045043 -143992115 + Tigger1 DNA MER2_type 965 2414 -4 542 292 78 0 chr3 74045076 74045295 -143991863 - LTR50 LTR ERVL -559 236 1 2328 132 14 14 chr3 74045692 74046055 -143991103 - THE1B LTR MaLR -1 363 1 1102 137 31 3 chr3 74046836 74047109 -143990049 - THE1C LTR MaLR 0 375 1 8970 127 45 45 chr3 74047109 74048690 -143988468 - THE1C-int LTR MaLR 0 1580 1 2188 161 0 29 chr3 74048690 74049076 -143988082 - THE1C LTR MaLR 0 375 1 200 200 0 0 chr3 74049655 74049690 -143987468 + GA-rich Low_complexity Low_complexity 4 38 0 25 51 0 0 chr3 74049943 74049982 -143987176 + AT_rich Low_complexity Low_complexity 1 39 0 2133 184 5 5 chr3 74050762 74051131 -143986027 - THE1C LTR MaLR 0 375 7 372 77 0 0 chr3 74051131 74051183 -143985975 + (TG)n Simple_repeat Simple_repeat 2 53 0 709 325 132 12 chr3 74052201 74052687 -143984471 + MLT1H1 LTR MaLR 12 555 0 26 0 0 0 chr3 74053997 74054023 -143983135 + AT_rich Low_complexity Low_complexity 1 26 0 181 333 81 18 chr3 74054692 74054803 -143982355 + L2 LINE L2 3155 3272 0 1287 147 34 0 chr3 74055971 74056209 -143980949 - L1MA8 LINE L1 -6 6285 6040 5174 171 37 4 chr3 74056220 74057447 -143979711 - L1PA16 LINE L1 -9 6157 4883 376 273 119 40 chr3 74057513 74057689 -143979469 - L2 LINE L2 -4 3309 3120 1075 58 0 45 chr3 74057892 74058047 -143979111 + L1PA5 LINE L1 6007 6154 0 787 357 129 26 chr3 74058320 74059093 -143978065 - L2 LINE L2 -337 2977 2125 1407 191 250 15 chr3 74059130 74059522 -143977636 - MLT1D LTR MaLR -21 484 1 285 317 94 50 chr3 74059667 74059847 -143977311 - MIR3 SINE MIR -6 202 15 353 259 134 0 chr3 74059900 74060012 -143977146 + MIR SINE MIR 38 164 -98 230 246 15 0 chr3 74060456 74060521 -143976637 - MER116 DNA Mariner -12 68 3 295 364 49 84 chr3 74060970 74061278 -143975880 - L3 LINE CR1 -3 1574 1278 25 0 0 0 chr3 74061552 74061577 -143975581 + AT_rich Low_complexity Low_complexity 1 25 0 292 289 67 47 chr3 74062779 74062928 -143974230 + L2 LINE L2 3162 3313 0 366 255 138 21 chr3 74063153 74063298 -143973860 + MLT1F1 LTR MaLR 1 162 -431 189 0 0 0 chr3 74063303 74063324 -143973834 + (TC)n Simple_repeat Simple_repeat 2 22 0 843 251 125 20 chr3 74063480 74063783 -143973375 + MLT1F1 LTR MaLR 211 545 -22 438 140 73 153 chr3 74064123 74064273 -143972885 + FRAM SINE Alu 13 150 -26 24 0 0 0 chr3 74064285 74064309 -143972849 + AT_rich Low_complexity Low_complexity 1 24 0 478 358 22 44 chr3 74064309 74064703 -143972455 - L2 LINE L2 -219 3094 2708 290 188 0 43 chr3 74065493 74065562 -143971596 - MLT1H LTR MaLR -352 197 132 2065 115 4 0 chr3 74065998 74066277 -143970881 + AluSq SINE Alu 1 280 -33 285 51 0 0 chr3 74066278 74066317 -143970841 + (CA)n Simple_repeat Simple_repeat 2 40 0 24 0 0 0 chr3 74067098 74067122 -143970036 + AT_rich Low_complexity Low_complexity 1 24 0 973 219 74 33 chr3 74067340 74067610 -143969548 - LTR9 LTR ERV1 0 612 332 348 43 0 0 chr3 74067915 74067961 -143969197 + (CA)n Simple_repeat Simple_repeat 2 47 0 906 263 65 3 chr3 74069047 74069340 -143967818 - L1MB8 LINE L1 0 6178 5868 1722 160 19 3 chr3 74069807 74070114 -143967044 + AluJb SINE Alu 1 312 0 21 36 0 0 chr3 74071855 74071883 -143965275 + AT_rich Low_complexity Low_complexity 1 28 0 32 75 0 0 chr3 74071996 74072063 -143965095 + AT_rich Low_complexity Low_complexity 1 67 0 221 222 0 0 chr3 74072161 74072206 -143964952 + (CA)n Simple_repeat Simple_repeat 2 46 0 25 0 0 0 chr3 74072312 74072337 -143964821 + AT_rich Low_complexity Low_complexity 1 25 0 4781 78 14 2 chr3 74072392 74073259 -143963899 - L1PA7 LINE L1 -239 5915 5042 888 218 33 74 chr3 74073269 74073512 -143963646 - MER52A LTR ERV1 -860 895 663 26 64 0 0 chr3 74073730 74073777 -143963381 + AT_rich Low_complexity Low_complexity 1 47 0 195 42 0 0 chr3 74074451 74074475 -143962683 + (TAG)n Simple_repeat Simple_repeat 2 25 0 33 0 0 0 chr3 74074835 74074868 -143962290 + AT_rich Low_complexity Low_complexity 1 33 0 40 37 0 0 chr3 74074988 74075042 -143962116 + AT_rich Low_complexity Low_complexity 1 54 0 21 36 0 0 chr3 74077092 74077120 -143960038 + AT_rich Low_complexity Low_complexity 1 28 0 251 397 60 26 chr3 74077426 74077693 -143959465 - L2 LINE L2 -3 3269 2994 2605 192 51 30 chr3 74078343 74078912 -143958246 - LTR1 LTR ERV1 0 785 205 1285 173 24 4 chr3 74079297 74079546 -143957612 - LTR1 LTR ERV1 -521 264 11 373 372 14 0 chr3 74079895 74080043 -143957115 - MLT1I LTR MaLR -213 196 47 208 269 86 81 chr3 74080336 74080533 -143956625 + MIR SINE MIR 26 223 -39 2276 90 0 0 chr3 74081068 74081358 -143955800 + AluSg1 SINE Alu 1 290 -19 7426 32 0 5 chr3 74081821 74082785 -143954373 - L1PA4 LINE L1 0 6155 5193 262 156 0 0 chr3 74082829 74082874 -143954284 + MLT2B2 LTR ERVL 471 515 0 22 35 0 0 chr3 74082909 74082938 -143954220 + AT_rich Low_complexity Low_complexity 1 29 0 192 313 104 0 chr3 74083070 74083137 -143954021 - MIR3 SINE MIR -50 158 85 2012 93 0 0 chr3 74083296 74083553 -143953605 + AluSx SINE Alu 1 257 -55 212 0 36 0 chr3 74083555 74083583 -143953575 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2266 90 17 0 chr3 74083984 74084285 -143952873 + AluSc SINE Alu 3 308 -1 22 35 0 0 chr3 74085344 74085373 -143951785 + AT_rich Low_complexity Low_complexity 1 29 0 2250 103 0 0 chr3 74085625 74085916 -143951242 - AluSx SINE Alu -19 293 3 315 284 55 23 chr3 74085995 74086211 -143950947 - L1MC/D LINE L1 -476 5645 5506 186 222 36 0 chr3 74087471 74087638 -143949520 + (TA)n Simple_repeat Simple_repeat 1 173 0 239 169 28 28 chr3 74087639 74087710 -143949448 + MER116 DNA Mariner 9 79 -1 281 258 11 0 chr3 74087864 74087953 -143949205 + (TA)n Simple_repeat Simple_repeat 2 91 0 435 332 10 58 chr3 74088101 74088306 -143948852 + MIR SINE MIR 9 203 -59 4162 152 13 7 chr3 74088313 74089026 -143948132 + L1PA15 LINE L1 5449 6165 0 7536 33 0 0 chr3 74089326 74090225 -143946933 - L1PA4 LINE L1 -3 6152 5254 2650 225 77 12 chr3 74090249 74091113 -143946045 - L1MB8 LINE L1 -95 6083 5159 2761 156 13 13 chr3 74091195 74091649 -143945509 - MLT1C LTR MaLR -13 454 1 2206 105 3 0 chr3 74091814 74092110 -143945048 - AluSq SINE Alu -16 297 1 44 91 0 0 chr3 74092792 74092913 -143944245 + AT_rich Low_complexity Low_complexity 1 121 0 21 0 0 0 chr3 74094517 74094538 -143942620 + AT_rich Low_complexity Low_complexity 1 21 0 809 214 27 98 chr3 74094947 74095283 -143941875 - L1MD3 LINE L1 -17 7978 7667 350 337 99 6 chr3 74095480 74095661 -143941497 - MIR SINE MIR -18 244 47 22 0 0 0 chr3 74095661 74095683 -143941475 + AT_rich Low_complexity Low_complexity 1 22 0 260 220 0 0 chr3 74096061 74096111 -143941047 - ERVL LTR ERVL -1771 3993 3944 * 1340 194 58 4 chr3 74096103 74096345 -143940813 + ERVL-B1 LTR ERVL 3391 3645 -2119 * 2278 236 31 33 chr3 74096322 74096808 -143940350 + ERVL-B1 LTR ERVL 4878 5342 -312 279 79 0 0 chr3 74096808 74096846 -143940312 + (CA)n Simple_repeat Simple_repeat 1 38 0 2278 236 31 33 chr3 74096846 74097159 -143939999 + ERVL-B1 LTR ERVL 5342 5654 0 1445 268 59 21 chr3 74097159 74097585 -143939573 + MLT2B1 LTR ERVL 1 442 -78 58 43 0 72 chr3 74097602 74097811 -143939347 + AT_rich Low_complexity Low_complexity 1 194 0 734 231 52 6 chr3 74097868 74098041 -143939117 + MLT1B LTR MaLR 210 390 0 1309 267 75 71 chr3 74098340 74098442 -143938716 - MLT1E3 LTR MaLR 0 624 524 2311 98 0 0 chr3 74098442 74098748 -143938410 + AluSg SINE Alu 1 306 -4 1309 267 75 71 chr3 74098748 74099262 -143937896 - MLT1E3 LTR MaLR -100 524 6 424 349 20 0 chr3 74099312 74099461 -143937697 + MIR SINE MIR 17 168 -94 206 32 32 0 chr3 74099577 74099608 -143937550 + (GA)n Simple_repeat Simple_repeat 2 33 0 3185 40 5 5 chr3 74099698 74100098 -143937060 - L1PA4 LINE L1 -2 6153 5754 34 24 0 0 chr3 74100474 74100515 -143936643 + AT_rich Low_complexity Low_complexity 1 41 0 24 53 0 0 chr3 74100638 74100676 -143936482 + AT_rich Low_complexity Low_complexity 1 38 0 311 339 0 32 chr3 74101049 74101173 -143935985 - MIR SINE MIR -71 191 72 914 201 11 0 chr3 74101326 74101500 -143935658 - 7SLRNA srpRNA srpRNA -118 202 27 1533 166 11 60 chr3 74101500 74101691 -143935467 + L1P5 LINE L1 5341 5505 -651 1840 145 48 0 chr3 74101691 74101981 -143935177 + AluSg SINE Alu 1 304 -6 1533 166 11 60 chr3 74101981 74102169 -143934989 + L1P5 LINE L1 5505 5701 -455 314 277 11 43 chr3 74102364 74102548 -143934610 + (CGGGG)n Simple_repeat Simple_repeat 2 179 0 248 181 8 60 chr3 74102568 74102701 -143934457 + GA-rich Low_complexity Low_complexity 2 127 0 22 0 0 0 chr3 74103397 74103419 -143933739 + AT_rich Low_complexity Low_complexity 1 22 0 35 0 0 0 chr3 74103858 74103893 -143933265 + AT_rich Low_complexity Low_complexity 1 35 0 47 33 0 0 chr3 74104050 74104111 -143933047 + AT_rich Low_complexity Low_complexity 1 61 0 520 271 15 8 chr3 74104564 74104697 -143932461 + L1MA4A LINE L1 819 952 -5897 10455 217 80 12 chr3 74104743 74109182 -143927976 + L1MA4A LINE L1 2259 6994 -11 423 232 40 25 chr3 74109557 74109680 -143927478 + MLT1E LTR MaLR 1 128 -465 24 32 0 0 chr3 74110049 74110080 -143927078 + AT_rich Low_complexity Low_complexity 1 31 0 256 254 15 0 chr3 74111397 74111464 -143925694 + L1MCc LINE L1 21 88 -6335 464 314 38 31 chr3 74111471 74111764 -143925394 + L1MCc LINE L1 161 455 -5968 428 289 12 83 chr3 74112058 74112311 -143924847 + L1MCc LINE L1 868 1102 -5321 630 214 89 6 chr3 74112417 74112705 -143924453 + L1MC/D LINE L1 5162 5471 -827 1303 160 3 72 chr3 74113087 74113380 -143923778 - L1PA16 LINE L1 -1 6165 5893 1888 134 0 31 chr3 74115069 74115390 -143921768 + AluSx SINE Alu 1 311 -1 192 77 0 0 chr3 74115495 74115521 -143921637 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 1026 78 0 0 chr3 74116028 74116156 -143921002 + AluSx SINE Alu 1 128 -184 1268 110 0 16 chr3 74116209 74116391 -143920767 + AluSx SINE Alu 121 299 -13 617 231 0 0 chr3 74116588 74116722 -143920436 + L1PB4 LINE L1 6020 6153 -3 21 0 0 0 chr3 74116722 74116743 -143920415 + AT_rich Low_complexity Low_complexity 1 21 0 218 234 156 39 chr3 74116743 74116820 -143920338 + MIR SINE MIR 66 151 -111 1354 133 180 34 chr3 74117346 74117640 -143919518 + MER1B DNA MER1_type 1 337 0 21 0 0 0 chr3 74118149 74118170 -143918988 + AT_rich Low_complexity Low_complexity 1 21 0 23 78 0 0 chr3 74118657 74118708 -143918450 + AT_rich Low_complexity Low_complexity 1 51 0 29 70 0 0 chr3 74118837 74118894 -143918264 + AT_rich Low_complexity Low_complexity 1 57 0 1419 234 0 0 chr3 74119325 74119714 -143917444 - L1HS LINE L1 0 6155 5767 429 233 54 16 chr3 74119849 74119978 -143917180 - L1M4 LINE L1 -3558 2588 2455 541 186 0 26 chr3 74120006 74120119 -143917039 - MLT1A1 LTR MaLR 0 365 256 384 278 48 11 chr3 74120119 74120306 -143916852 - L1M4 LINE L1 -3279 2867 2674 583 314 0 6 chr3 74120319 74120478 -143916680 - MLT1A2 LTR MaLR -31 343 186 237 241 0 0 chr3 74120496 74120550 -143916608 - MLT1A2 LTR MaLR -308 57 4 2136 205 12 2 chr3 74120553 74120968 -143916190 - MLT1A2-int LTR MaLR 0 1735 1317 604 160 9 9 chr3 74121064 74121170 -143915988 - MLT1A1 LTR MaLR -256 109 4 6537 70 15 1 chr3 74121363 74122436 -143914722 + L1PA7 LINE L1 5061 6154 0 198 91 0 0 chr3 74123087 74123120 -143914038 + (TG)n Simple_repeat Simple_repeat 2 34 0 415 299 13 7 chr3 74123528 74123682 -143913476 + L1MB7 LINE L1 6013 6167 -17 310 286 90 8 chr3 74123703 74123981 -143913177 + L1ME1 LINE L1 1538 1710 -4832 1696 179 0 0 chr3 74123987 74124266 -143912892 + AluJb SINE Alu 10 288 -24 526 263 118 9 chr3 74124270 74124498 -143912660 + L1ME1 LINE L1 2091 2343 -4482 759 301 58 14 chr3 74124515 74124768 -143912390 + L1ME1 LINE L1 2467 2746 -4079 894 28 0 126 chr3 74124768 74124911 -143912247 + L1PA13 LINE L1 6020 6144 -19 759 301 58 14 chr3 74124911 74125073 -143912085 + L1ME1 LINE L1 2746 2900 -3925 34 79 0 0 chr3 74125073 74125149 -143912009 + AT_rich Low_complexity Low_complexity 1 76 0 26797 46 39 2 chr3 74125658 74129090 -143908068 - L1P LINE L1 -2582 3564 8 569 367 84 23 chr3 74129736 74130510 -143906648 - MERVL LTR ERVL -1279 4375 3555 443 351 101 37 chr3 74130612 74131293 -143905865 - MERVL LTR ERVL -2334 3151 2427 24 77 0 0 chr3 74132835 74132887 -143904271 + AT_rich Low_complexity Low_complexity 1 52 0 286 310 17 26 chr3 74133331 74133447 -143903711 + MER90 LTR ERV1 67 181 -394 200 208 73 0 chr3 74133817 74133913 -143903245 + (TA)n Simple_repeat Simple_repeat 1 103 0 29 47 0 0 chr3 74133916 74133959 -143903199 + AT_rich Low_complexity Low_complexity 1 43 0 553 284 75 21 chr3 74133961 74134200 -143902958 + L1ME1 LINE L1 5143 5394 -1250 1731 222 143 13 chr3 74134202 74134671 -143902487 + MER34 LTR ERV1 1 530 -12 383 232 0 0 chr3 74134697 74134779 -143902379 + L1ME1 LINE L1 5399 5480 -1164 846 232 38 42 chr3 74134780 74135043 -143902115 + L1ME1 LINE L1 6076 6337 -327 610 229 39 7 chr3 74135097 74135250 -143901908 + L1ME1 LINE L1 6497 6654 -10 1703 264 112 25 chr3 74135363 74136274 -143900884 + L1M4 LINE L1 2742 3731 -2415 735 299 55 44 chr3 74136551 74137010 -143900148 - LTR16B LTR ERVL 0 464 1 2455 69 3 0 chr3 74137319 74137625 -143899533 - AluY SINE Alu -2 309 3 601 328 55 29 chr3 74137845 74138603 -143898555 - MERVL LTR ERVL -597 4888 4114 747 216 79 32 chr3 74138792 74138982 -143898176 + MLT2B3 LTR ERVL 1 199 -355 324 222 248 17 chr3 74139030 74139101 -143898057 + MLT2B3 LTR ERVL 411 464 -90 342 67 0 0 chr3 74139101 74139146 -143898012 + (CA)n Simple_repeat Simple_repeat 2 46 0 324 222 248 17 chr3 74139146 74139191 -143897967 + MLT2B3 LTR ERVL 464 554 0 406 321 31 52 chr3 74139211 74139501 -143897657 - MERVL LTR ERVL -1378 3618 3335 381 244 41 8 chr3 74139502 74139625 -143897533 - MLT1C LTR MaLR -340 127 1 1427 204 51 12 chr3 74139715 74140048 -143897110 - L1MB8 LINE L1 0 6178 5833 * 2102 261 35 20 chr3 74140046 74140140 -143897018 - L1MB8 LINE L1 -745 5401 5310 2411 65 0 7 chr3 74140140 74140448 -143896710 - AluY SINE Alu -5 306 1 2102 261 35 20 chr3 74140448 74141107 -143896051 - L1MB8 LINE L1 -836 5310 4637 206 352 9 19 chr3 74141686 74141794 -143895364 - MIR SINE MIR -32 230 124 6059 191 49 75 chr3 74141807 74143691 -143893467 + L1P LINE L1 12 1846 -4300 6427 50 1 1 chr3 74143691 74144486 -143892672 + L1PA5 LINE L1 5352 6146 -8 12342 105 20 3 chr3 74144510 74146403 -143890755 + L1P LINE L1 2750 4675 -1471 27 49 0 0 chr3 74147512 74147553 -143889605 + AT_rich Low_complexity Low_complexity 1 41 0 25 75 0 0 chr3 74147975 74148028 -143889130 + AT_rich Low_complexity Low_complexity 1 53 0 284 329 47 35 chr3 74149215 74149385 -143887773 + MIR3 SINE MIR 37 208 0 232 299 231 0 chr3 74150461 74150595 -143886563 - MIR3 SINE MIR -28 180 16 506 246 66 33 chr3 74151144 74151327 -143885831 - MER5A DNA MER1_type 0 189 1 1377 241 53 43 chr3 74151637 74152235 -143884923 - L1MB8 LINE L1 -1585 4561 3958 2053 124 13 10 chr3 74152239 74152537 -143884621 - AluSq SINE Alu -12 301 3 335 310 71 18 chr3 74152750 74152863 -143884295 - MERVL LTR ERVL -1908 3088 2970 1165 224 28 4 chr3 74153210 74153465 -143883693 + LTR43 LTR ERV1 176 436 -166 277 222 65 93 chr3 74153472 74153580 -143883578 + MER41E LTR ERV1 356 460 -52 5194 102 29 79 chr3 74153679 74153891 -143883267 + MER4D LTR ERV1 5 226 -646 410 63 63 32 chr3 74153891 74153948 -143883210 + AluY SINE Alu 74 133 -173 2543 40 0 13 chr3 74153948 74154249 -143882909 + AluY SINE Alu 1 297 -14 5194 102 29 79 chr3 74154254 74154888 -143882270 + MER4D LTR ERV1 226 867 -5 942 297 70 69 chr3 74154924 74155862 -143881296 - MERVL LTR ERVL -2252 2744 1732 1008 306 42 24 chr3 74155862 74156316 -143880842 + LTR40b LTR ERVL 1 462 0 942 297 70 69 chr3 74156316 74156429 -143880729 - MERVL LTR ERVL -3264 1732 1621 198 383 14 7 chr3 74156499 74156640 -143880518 + MIR SINE MIR 121 262 0 22 35 0 0 chr3 74157629 74157658 -143879500 + AT_rich Low_complexity Low_complexity 1 29 0 7748 23 0 0 chr3 74157769 74158839 -143878319 + L1PA3 LINE L1 5086 6155 0 186 208 0 0 chr3 74158903 74158951 -143878207 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 340 301 59 7 chr3 74158961 74159097 -143878061 - MIR SINE MIR -79 183 41 24 0 0 0 chr3 74159544 74159568 -143877590 + AT_rich Low_complexity Low_complexity 1 24 0 1950 159 3 0 chr3 74159796 74160097 -143877061 + AluSx SINE Alu 3 304 -8 635 360 80 22 chr3 74160391 74160982 -143876176 + L2 LINE L2 2689 3312 -1 704 147 0 0 chr3 74161248 74161357 -143875801 + L1PA15 LINE L1 5956 6064 -101 24 32 0 0 chr3 74162071 74162102 -143875056 + AT_rich Low_complexity Low_complexity 1 31 0 189 304 70 26 chr3 74162250 74162365 -143874793 + MIR SINE MIR 47 166 -96 1794 184 7 0 chr3 74162454 74162759 -143874399 + AluSx SINE Alu 2 308 -4 2421 279 54 26 chr3 74162776 74163773 -143873385 + L1MEc LINE L1 136 1160 -5236 515 229 18 18 chr3 74163807 74163973 -143873185 + L1M4 LINE L1 3629 3794 -2352 1255 243 74 89 chr3 74163980 74164384 -143872774 + L1M4 LINE L1 4263 4671 -1475 1841 139 36 20 chr3 74164384 74164685 -143872473 - AluSx SINE Alu -6 306 1 1255 243 74 89 chr3 74164685 74165398 -143871760 + L1M4 LINE L1 4671 5364 -782 275 182 0 0 chr3 74165404 74165448 -143871710 - MER2 DNA MER2_type -17 328 285 2832 234 17 7 chr3 74165489 74166066 -143871092 + L1P4 LINE L1 1 583 -6204 * 3008 217 11 30 chr3 74166050 74166713 -143870445 + L1P4 LINE L1 1264 1913 -4874 8485 188 15 5 chr3 74166717 74168912 -143868246 + L1P4 LINE L1 4217 6430 -386 9185 191 34 59 chr3 74169012 74170733 -143866425 + L1MA3 LINE L1 3158 4920 -2804 1161 105 0 23 chr3 74170733 74170904 -143866254 - L1PA3 LINE L1 0 6155 5989 9185 191 34 59 chr3 74170904 74172211 -143864947 + L1MA3 LINE L1 4920 6258 -1466 180 0 0 0 chr3 74172211 74172231 -143864927 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 9185 191 34 59 chr3 74172231 74174091 -143863067 + L1MA3 LINE L1 6258 7724 0 23 68 0 0 chr3 74174091 74174135 -143863023 + AT_rich Low_complexity Low_complexity 1 44 0 207 0 0 0 chr3 74174674 74174697 -143862461 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 13764 40 1 9 chr3 74175184 74175559 -143861599 - L1P LINE L1 -927 5219 4842 2784 19 0 0 chr3 74175559 74175869 -143861289 + AluYb8 SINE Alu 1 310 -8 13764 40 1 9 chr3 74175869 74177201 -143859957 - L1P LINE L1 -1304 4842 3526 6944 33 0 0 chr3 74177201 74178018 -143859140 + L1PA5 LINE L1 5337 6154 0 210 353 133 40 chr3 74178518 74178923 -143858235 + L2 LINE L2 2364 2806 -508 284 230 14 14 chr3 74178930 74179004 -143858154 - L1PA12 LINE L1 -7475 106 33 6102 195 37 30 chr3 74179007 74179448 -143857710 + L1PA15 LINE L1 4060 4497 -1668 2130 117 7 0 chr3 74179448 74179747 -143857411 + AluSq SINE Alu 1 301 -12 6102 195 37 30 chr3 74179747 74179821 -143857337 + L1PA15 LINE L1 4497 4569 -1596 7486 191 115 23 chr3 74179821 74181428 -143855730 + MER52A LTR ERV1 1 1755 0 6102 195 37 30 chr3 74181428 74183021 -143854137 + L1PA15 LINE L1 4569 6160 -5 22 0 0 0 chr3 74183454 74183476 -143853682 + AT_rich Low_complexity Low_complexity 1 22 0 588 342 113 34 chr3 74183482 74184128 -143853030 + HAL1 LINE L1 1116 1812 -695 21 0 0 0 chr3 74184227 74184248 -143852910 + AT_rich Low_complexity Low_complexity 1 21 0 203 114 0 45 chr3 74184254 74184298 -143852860 + (CTAAA)n Simple_repeat Simple_repeat 2 43 0 27 29 0 0 chr3 74184430 74184464 -143852694 + AT_rich Low_complexity Low_complexity 1 34 0 8083 8 0 0 chr3 74184698 74185975 -143851183 - L1HS LINE L1 0 6155 4879 23 0 0 0 chr3 74186594 74186617 -143850541 + AT_rich Low_complexity Low_complexity 1 23 0 219 310 14 56 chr3 74186793 74186864 -143850294 - MIR SINE MIR -107 101 34 1612 175 41 10 chr3 74186873 74187164 -143849994 - AluSx SINE Alu -12 300 1 21 57 0 0 chr3 74187460 74187495 -143849663 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr3 74187550 74187575 -143849583 + AT_rich Low_complexity Low_complexity 1 25 0 1886 146 80 15 chr3 74187668 74188058 -143849100 + L1MA8 LINE L1 5869 6283 -8 410 160 67 0 chr3 74189754 74189829 -143847329 + MSTB LTR MaLR 1 80 -346 1774 175 72 57 chr3 74189830 74189858 -143847300 - MSTA LTR MaLR -4 424 398 2137 100 14 0 chr3 74189858 74190149 -143847009 + AluSc SINE Alu 1 295 -14 1774 175 72 57 chr3 74190149 74190538 -143846620 - MSTA LTR MaLR -30 398 1 1465 194 97 9 chr3 74190539 74190858 -143846300 + MSTB LTR MaLR 80 426 0 1777 195 77 8 chr3 74191002 74191381 -143845777 + MLT2C2 LTR ERVL 1 405 -59 1920 111 0 8 chr3 74191381 74191670 -143845488 + AluSq SINE Alu 27 313 0 24 0 0 0 chr3 74191684 74191708 -143845450 + AT_rich Low_complexity Low_complexity 1 24 0 661 149 9 0 chr3 74192497 74192611 -143844547 + L1MA3 LINE L1 6189 6303 -2 1166 276 20 8 chr3 74192682 74193033 -143844125 - L1MC4a LINE L1 -360 7448 7094 769 323 57 43 chr3 74193216 74193776 -143843382 - ERVL LTR ERVL -739 5025 4458 425 350 37 25 chr3 74193815 74194058 -143843100 - ERVL LTR ERVL -1409 4355 4110 356 328 29 25 chr3 74194093 74194297 -143842861 - ERVL LTR ERVL -1658 3996 3792 2596 109 3 5 chr3 74194348 74194724 -143842434 - THE1C LTR MaLR 0 375 1 518 336 127 11 chr3 74194846 74195215 -143841943 - ERVL LTR ERVL -2126 3638 3227 1607 219 18 86 chr3 74196065 74196636 -143840522 + LTR55 LTR ERV 1 532 -16 1691 141 4 0 chr3 74196886 74197141 -143840017 + AluSq SINE Alu 40 295 -18 225 0 0 0 chr3 74197368 74197393 -143839765 + (T)n Simple_repeat Simple_repeat 1 25 0 1100 239 53 113 chr3 74198572 74199078 -143838080 + MLT1F1 LTR MaLR 92 567 0 12713 21 0 0 chr3 74199257 74201508 -143835650 - L1PA2 LINE L1 -3 6152 3901 546 270 31 13 chr3 74201610 74201769 -143835389 - MLT1E3 LTR MaLR -238 386 225 426 288 26 39 chr3 74201829 74201982 -143835176 - MLT1E3 LTR MaLR -503 151 1 29 47 0 0 chr3 74201998 74202041 -143835117 + AT_rich Low_complexity Low_complexity 1 43 0 25 51 0 0 chr3 74202342 74202381 -143834777 + AT_rich Low_complexity Low_complexity 1 39 0 191 286 36 0 chr3 74202578 74202634 -143834524 + MIR SINE MIR 43 100 -108 814 354 117 17 chr3 74202702 74203292 -143833866 + L2 LINE L2 35 683 -2631 957 152 318 25 chr3 74203437 74203714 -143833444 + L1MCa LINE L1 1487 1844 -4582 559 244 122 13 chr3 74203715 74203871 -143833287 + MLT1D LTR MaLR 284 456 -49 457 288 9 52 chr3 74203930 74204142 -143833016 + L1MC5 LINE L1 6632 6834 -1127 701 140 96 25 chr3 74204154 74204311 -143832847 - L1MA8 LINE L1 -69 6222 6055 270 202 21 11 chr3 74204329 74204423 -143832735 + (TA)n Simple_repeat Simple_repeat 1 95 0 486 256 29 103 chr3 74204436 74204787 -143832371 + L1MC5 LINE L1 6852 7176 -785 362 275 141 7 chr3 74204847 74204996 -143832162 + L1M4 LINE L1 4024 4192 -1954 459 294 41 5 chr3 74205045 74205263 -143831895 + L1M4 LINE L1 4349 4574 -1572 235 193 53 0 chr3 74205270 74205327 -143831831 - L1MA8 LINE L1 -6 7245 7186 4467 149 61 10 chr3 74205379 74206204 -143830954 + Tigger3(Golem) DNA MER2_type 2163 3029 0 4695 187 38 26 chr3 74206206 74208264 -143828894 - L1MA8 LINE L1 -65 7186 5108 332 70 0 0 chr3 74208281 74208324 -143828834 + L1 LINE L1 4113 4155 -1991 354 150 80 5 chr3 74208382 74208491 -143828667 - L1MA8 LINE L1 -31 6260 6140 * 991 220 84 60 chr3 74208487 74209072 -143828086 - L1MA8 LINE L1 -3871 3235 2629 276 233 17 0 chr3 74209080 74209140 -143828018 - L1MA8 LINE L1 -6648 382 322 1647 194 12 24 chr3 74209158 74209488 -143827670 - L1MA8 LINE L1 -6696 334 9 301 279 68 32 chr3 74209770 74209989 -143827169 + L1MC5 LINE L1 7327 7553 -408 28 61 0 0 chr3 74210074 74210123 -143827035 + AT_rich Low_complexity Low_complexity 1 49 0 1767 157 24 47 chr3 74210672 74211054 -143826104 + THE1C LTR MaLR 1 373 -2 1785 127 4 0 chr3 74211522 74211782 -143825376 + AluSg SINE Alu 38 298 -12 200 250 0 0 chr3 74211845 74211885 -143825273 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 23 0 0 0 chr3 74212835 74212858 -143824300 + AT_rich Low_complexity Low_complexity 1 23 0 2034 169 13 97 chr3 74215555 74216112 -143821046 - L1MC2 LINE L1 -10 6334 5825 1717 170 47 8 chr3 74216123 74216487 -143820671 - L1MB1 LINE L1 -4 6164 5787 316 273 34 0 chr3 74216495 74216583 -143820575 - L1MC4 LINE L1 -1339 6703 6613 309 297 97 29 chr3 74216603 74216778 -143820380 + MIR SINE MIR 74 260 -2 318 26 0 0 chr3 74216802 74216841 -143820317 + (TG)n Simple_repeat Simple_repeat 2 40 0 196 340 68 19 chr3 74217447 74217550 -143819608 - MER5A DNA MER1_type -25 164 57 24 0 0 0 chr3 74217785 74217809 -143819349 + AT_rich Low_complexity Low_complexity 1 24 0 3358 195 124 6 chr3 74218753 74219679 -143817479 + L1M1 LINE L1 12 1770 -5795 2310 110 0 31 chr3 74219681 74220063 -143817095 + L1M1 LINE L1 2671 3040 -4525 426 234 131 41 chr3 74221529 74221790 -143815368 - MLT1H LTR MaLR 0 542 254 283 120 40 0 chr3 74221848 74221898 -143815260 + MLT1C LTR MaLR 1 52 -415 354 302 173 2 chr3 74222066 74222252 -143814906 - MIR SINE MIR -22 240 20 21 71 0 0 chr3 74222625 74222667 -143814491 + AT_rich Low_complexity Low_complexity 1 42 0 938 106 35 14 chr3 74223486 74223759 -143813399 + THE1C LTR MaLR 3 375 0 7307 149 36 8 chr3 74223759 74224948 -143812210 + THE1C-int LTR MaLR 1 1223 -357 24 0 0 0 chr3 74225015 74225039 -143812119 + AT_rich Low_complexity Low_complexity 1 24 0 242 89 44 0 chr3 74225465 74225510 -143811648 + (TCTA)n Simple_repeat Simple_repeat 1 47 0 213 240 20 0 chr3 74225691 74225741 -143811417 + (TATATG)n Simple_repeat Simple_repeat 1 51 0 22 70 0 0 chr3 74227193 74227236 -143809922 + AT_rich Low_complexity Low_complexity 1 43 0 1199 130 6 0 chr3 74228966 74229143 -143808015 - AluSg/x SINE Alu 0 312 135 1663 114 4 4 chr3 74229144 74229380 -143807778 - AluSx SINE Alu -13 299 64 1289 207 40 65 chr3 74229604 74229643 -143807515 - MLT1A1 LTR MaLR 0 365 327 1733 123 8 19 chr3 74229643 74229903 -143807255 + AluSp SINE Alu 39 295 -18 1289 207 40 65 chr3 74229903 74230235 -143806923 - MLT1A1 LTR MaLR -38 327 3 604 261 115 18 chr3 74230296 74230514 -143806644 - MIR SINE MIR -15 247 9 27 0 0 0 chr3 74230791 74230818 -143806340 + AT_rich Low_complexity Low_complexity 1 27 0 3899 80 0 4 chr3 74231758 74232271 -143804887 + MER9 LTR ERVK 1 511 0 6741 72 6 1 chr3 74233738 74235151 -143802007 - L1PA7 LINE L1 -6 6148 4733 7133 87 0 10 chr3 74235151 74235899 -143801259 + L1P LINE L1 3499 4233 -1913 2089 116 0 26 chr3 74235899 74236210 -143800948 + AluY SINE Alu 1 303 -8 7133 87 0 10 chr3 74236210 74236722 -143800436 + L1P LINE L1 4233 4749 -1397 2044 71 0 14 chr3 74237177 74237485 -143799673 - AluSc SINE Alu 0 304 1 23 0 0 0 chr3 74237611 74237634 -143799524 + AT_rich Low_complexity Low_complexity 1 23 0 388 333 122 0 chr3 74238301 74238481 -143798677 + MIR SINE MIR 30 231 -31 182 229 0 71 chr3 74238890 74238960 -143798198 - L2 LINE L2 -96 3217 3153 610 327 27 12 chr3 74240231 74240488 -143796670 - ERVL LTR ERVL -1633 4131 3871 245 270 87 32 chr3 74240544 74240670 -143796488 + MLT1H LTR MaLR 23 155 -394 888 343 121 32 chr3 74240999 74241894 -143795264 - ERVL LTR ERVL -1867 3787 2814 420 319 91 25 chr3 74242227 74242671 -143794487 - ERVL LTR ERVL -2941 2055 1638 432 64 26 13 chr3 74242954 74243032 -143794126 + (TA)n Simple_repeat Simple_repeat 2 80 0 45 19 0 0 chr3 74243321 74243373 -143793785 + AT_rich Low_complexity Low_complexity 1 52 0 255 228 0 51 chr3 74243383 74243462 -143793696 + CT-rich Low_complexity Low_complexity 2 76 0 28 50 0 17 chr3 74244422 74244444 -143792714 + AT_rich Low_complexity Low_complexity 1 22 -37 370 22 0 0 chr3 74244444 74244490 -143792668 + L1PA3 LINE L1 6107 6152 -3 28 50 0 17 chr3 74244490 74244527 -143792631 + AT_rich Low_complexity Low_complexity 22 59 0 444 122 0 176 chr3 74246205 74246336 -143790822 + L1MA3 LINE L1 6198 6305 0 189 308 0 0 chr3 74247327 74247379 -143789779 + MIR SINE MIR 54 105 -157 6188 195 24 26 chr3 74247388 74247905 -143789253 - L1MA4A LINE L1 -474 5829 5312 201 74 0 0 chr3 74247905 74247932 -143789226 + (TTG)n Simple_repeat Simple_repeat 3 29 0 6188 195 24 26 chr3 74247932 74248435 -143788723 - L1MA4A LINE L1 -991 5312 4809 1943 147 13 3 chr3 74248435 74248734 -143788424 - AluSx SINE Alu -10 302 1 6188 195 24 26 chr3 74248734 74249603 -143787555 - L1MA4A LINE L1 -1494 4809 3938 912 222 4 0 chr3 74249604 74252334 -143784824 - ALR/Alpha Satellite centromeric 0 2741 1 941 225 8 4 chr3 74252436 74256117 -143781041 - ALR/Alpha Satellite centromeric 0 10166 6500 1936 105 10 36 chr3 74256117 74256422 -143780736 - AluY SINE Alu -14 297 1 941 225 8 4 chr3 74256422 74262565 -143774593 - ALR/Alpha Satellite centromeric -3666 6500 1 935 214 10 8 chr3 74262577 74263214 -143773944 - ALR/Alpha Satellite centromeric -1 1383 749 207 0 0 0 chr3 74263214 74263237 -143773921 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 935 214 10 8 chr3 74263237 74263958 -143773200 - ALR/Alpha Satellite centromeric -635 749 1 610 239 6 0 chr3 74263973 74264136 -143773022 - ALR/Alpha Satellite centromeric 0 172 9 904 230 5 0 chr3 74264151 74265294 -143771864 - ALR/Alpha Satellite centromeric -4 1148 1 534 261 95 36 chr3 74315294 74315516 -143721642 + L2 LINE L2 3078 3312 -1 206 164 14 41 chr3 74315830 74315903 -143721255 + (TA)n Simple_repeat Simple_repeat 2 72 0 22 0 0 0 chr3 74316021 74316043 -143721115 + AT_rich Low_complexity Low_complexity 1 22 0 351 0 0 0 chr3 74316372 74316411 -143720747 + (TG)n Simple_repeat Simple_repeat 2 40 0 4902 180 9 9 chr3 74316529 74317422 -143719736 - Tigger1 DNA MER2_type -1525 893 1 1723 156 156 11 chr3 74318021 74318392 -143718766 + MSTA LTR MaLR 4 428 0 1939 138 7 3 chr3 74318486 74318797 -143718361 + AluSx SINE Alu 1 312 0 715 338 50 43 chr3 74319516 74319936 -143717222 + L3 LINE CR1 881 1303 -274 1067 142 34 39 chr3 74319972 74320205 -143716953 + L1MA8 LINE L1 6055 6286 -5 234 233 39 39 chr3 74320768 74320871 -143716287 - MLT1K LTR MaLR -158 430 328 2059 121 3 0 chr3 74320976 74321294 -143715864 - AluSp SINE Alu 0 319 1 1171 123 84 20 chr3 74321648 74321851 -143715307 - THE1C LTR MaLR -159 216 1 1038 244 57 92 chr3 74321920 74321965 -143715193 - LTR68 LTR ERV1 -169 571 526 1602 130 0 0 chr3 74321965 74322188 -143714970 - AluSg/x SINE Alu -24 288 66 1038 244 57 92 chr3 74322188 74322597 -143714561 - LTR68 LTR ERV1 -214 526 133 4002 212 31 4 chr3 74322597 74323499 -143713659 - L1 LINE L1 -1664 4482 3557 1379 70 0 11 chr3 74323679 74323864 -143713294 - L1PA7 LINE L1 -8 6146 5964 1435 36 0 0 chr3 74323877 74324045 -143713113 - AluY SINE Alu -13 298 131 399 257 28 9 chr3 74324231 74324340 -143712818 - MER81 DNA DNA -2 112 2 1279 231 32 62 chr3 74324678 74325080 -143712078 - MLT1B LTR MaLR 0 390 1 32 43 0 0 chr3 74325431 74325477 -143711681 + AT_rich Low_complexity Low_complexity 1 46 0 308 299 17 60 chr3 74327142 74327259 -143709899 - L1MC4 LINE L1 -1166 6876 6765 1273 117 76 31 chr3 74327655 74327878 -143709280 + THE1B LTR MaLR 1 233 -131 874 113 0 0 chr3 74327878 74328002 -143709156 + L1PA8 LINE L1 6023 6146 -26 24 32 0 0 chr3 74328535 74328566 -143708592 + AT_rich Low_complexity Low_complexity 1 31 0 27 49 0 0 chr3 74330074 74330115 -143707043 + AT_rich Low_complexity Low_complexity 1 41 0 262 296 28 19 chr3 74330532 74330640 -143706518 + MLT1I LTR MaLR 98 206 -203 1769 175 19 78 chr3 74330777 74331107 -143706051 + MER89 LTR ERV1 1 392 -167 2509 33 0 29 chr3 74331107 74331413 -143705745 - AluY SINE Alu -14 297 1 1769 175 19 78 chr3 74331413 74331572 -143705586 + MER89 LTR ERV1 392 559 0 979 233 67 54 chr3 74332099 74332413 -143704745 - MLT2B1 LTR ERVL -202 318 1 2839 222 25 5 chr3 74332697 74333336 -143703822 - MER82 DNA MER2_type 0 653 2 27 62 0 0 chr3 74333468 74333516 -143703642 + AT_rich Low_complexity Low_complexity 1 48 0 31 0 0 0 chr3 74333865 74333896 -143703262 + AT_rich Low_complexity Low_complexity 1 31 0 255 210 48 16 chr3 74333905 74333967 -143703191 - MER69 DNA AcHobo -94 83 20 1882 183 69 34 chr3 74334081 74334452 -143702706 - MLT1C LTR MaLR 0 467 76 2477 119 8 3 chr3 74334452 74334814 -143702344 + THE1B LTR MaLR 1 364 0 1882 183 69 34 chr3 74334814 74334889 -143702269 - MLT1C LTR MaLR -391 76 5 4776 23 0 7 chr3 74335472 74336035 -143701123 + L1HS LINE L1 5597 6155 0 186 71 0 0 chr3 74336038 74336066 -143701092 + (A)n Simple_repeat Simple_repeat 1 28 0 4384 198 53 21 chr3 74336066 74337672 -143699486 + L1MA9 LINE L1 4621 6277 -35 222 91 0 0 chr3 74337801 74337834 -143699324 + (TAAAAA)n Simple_repeat Simple_repeat 4 36 0 462 322 14 28 chr3 74338042 74338325 -143698833 + L1MC/D LINE L1 5255 5533 -2275 1887 257 71 23 chr3 74338822 74339892 -143697266 + L1M1 LINE L1 3048 4169 -3396 4079 224 35 12 chr3 74339925 74341074 -143696084 + L1M1 LINE L1 4285 5459 -2106 578 148 6 124 chr3 74341087 74341164 -143695994 + L1M1 LINE L1 5753 5801 -1764 1740 100 0 159 chr3 74341164 74341515 -143695643 + AluSg1 SINE Alu 1 295 -14 578 148 6 124 chr3 74341515 74341606 -143695552 + L1M1 LINE L1 5801 5901 -1664 58 54 0 0 chr3 74341756 74341849 -143695309 + AT_rich Low_complexity Low_complexity 1 93 0 23 33 0 0 chr3 74342018 74342048 -143695110 + AT_rich Low_complexity Low_complexity 1 30 0 1001 355 19 14 chr3 74342814 74343177 -143693981 + L1MB8 LINE L1 276 640 -6219 310 305 91 39 chr3 74343213 74343695 -143693463 + L1MB8 LINE L1 2550 3056 -4082 * 3696 248 59 56 chr3 74343674 74343985 -143693173 + L1MB8 LINE L1 3366 3674 -3283 2258 106 21 0 chr3 74343985 74344324 -143692834 + L1PA13 LINE L1 5813 6158 -5 3696 248 59 56 chr3 74344324 74345836 -143691322 + L1MB8 LINE L1 3674 5195 -1762 733 266 60 4 chr3 74345837 74346104 -143691054 - L1M4 LINE L1 -2921 3225 2944 442 208 94 20 chr3 74346107 74346256 -143690902 + L1MB8 LINE L1 6446 6605 -390 406 231 19 10 chr3 74346255 74346359 -143690799 + L1M4 LINE L1 2995 3099 -3047 * 1345 204 21 57 chr3 74346387 74346770 -143690388 + L1MB8 LINE L1 6610 6978 -11 291 295 39 39 chr3 74346785 74346863 -143690295 + MIR SINE MIR 20 97 -165 623 361 56 19 chr3 74346903 74347280 -143689878 - MLT1K LTR MaLR -49 539 149 1652 168 114 57 chr3 74349927 74350332 -143686826 + MSTA LTR MaLR 1 428 0 2885 167 12 6 chr3 74350332 74350848 -143686310 + MSTA-int LTR MaLR 1 519 -1132 4346 144 30 23 chr3 74350965 74351708 -143685450 + MSTA-int LTR MaLR 833 1580 0 1760 189 131 11 chr3 74351708 74352090 -143685068 + MSTA LTR MaLR 1 428 0 253 355 11 11 chr3 74352120 74352213 -143684945 + L2 LINE L2 3004 3096 -176 422 344 120 44 chr3 74352620 74353071 -143684087 + L2 LINE L2 2458 2942 -372 325 100 0 40 chr3 74353103 74353153 -143684005 - MLT2B1 LTR ERVL 0 464 417 180 125 0 0 chr3 74353157 74353189 -143683969 + (TG)n Simple_repeat Simple_repeat 2 33 0 327 193 0 0 chr3 74353190 74353273 -143683885 + (TA)n Simple_repeat Simple_repeat 2 84 0 1493 275 101 12 chr3 74353288 74353713 -143683445 - MLT2B1 LTR ERVL -57 463 1 221 328 95 0 chr3 74353855 74353971 -143683187 + MIR SINE MIR 92 218 -44 46 74 0 0 chr3 74354233 74354328 -143682830 + AT_rich Low_complexity Low_complexity 1 95 0 22 0 0 0 chr3 74354371 74354393 -143682765 + AT_rich Low_complexity Low_complexity 1 22 0 1981 161 3 0 chr3 74354403 74354714 -143682444 - AluJb SINE Alu 0 312 1 3712 122 4 0 chr3 74354728 74355277 -143681881 - L1PA14 LINE L1 0 6161 5611 8432 195 16 11 chr3 74355277 74356992 -143680166 + L1P LINE L1 3154 4876 -1270 3297 89 14 8 chr3 74358740 74359223 -143677935 - LTR19A LTR ERV1 0 486 1 1949 109 3 14 chr3 74359223 74359506 -143677652 - LTR19A-int LTR ERV1 0 5586 5307 * 2416 99 15 0 chr3 74359489 74359823 -143677335 - LTR19A-int LTR ERV1 -1428 4158 3820 * 7800 171 101 101 chr3 74359805 74361513 -143675645 - LTR19A-int LTR ERV1 -2579 3007 1301 460 108 0 0 chr3 74361513 74361578 -143675580 - AluSp/q SINE Alu -19 294 230 417 111 0 0 chr3 74361579 74361642 -143675516 + AluS SINE Alu 12 74 -229 7800 171 101 101 chr3 74361642 74362811 -143674347 - LTR19A-int LTR ERV1 -4284 1302 1 1243 87 11 22 chr3 74362811 74362996 -143674162 - LTR19A LTR ERV1 0 486 304 352 282 105 87 chr3 74364304 74364800 -143672358 - HAL1b LINE L1 -785 563 59 22 0 0 0 chr3 74366482 74366504 -143670654 + AT_rich Low_complexity Low_complexity 1 22 0 591 226 156 66 chr3 74366694 74367118 -143670040 - LTR37B LTR ERV1 0 468 7 1039 204 105 118 chr3 74369189 74369402 -143667756 + MLT2B3 LTR ERVL 103 317 -237 1760 158 55 38 chr3 74369402 74369769 -143667389 - THE1C LTR MaLR -2 373 1 1039 204 105 118 chr3 74369769 74370011 -143667147 + MLT2B3 LTR ERVL 317 552 -2 512 294 6 0 chr3 74370062 74370232 -143666926 - Charlie2a DNA MER1_type -1225 1637 1467 915 205 61 41 chr3 74370535 74370733 -143666425 - MSTD LTR MaLR 0 396 203 2045 117 10 13 chr3 74370733 74371042 -143666116 - AluSp SINE Alu -5 308 1 915 205 61 41 chr3 74371042 74371194 -143665964 - MSTD LTR MaLR -193 203 1 300 376 48 0 chr3 74371392 74371517 -143665641 + L3 LINE CR1 182 312 -1265 1631 170 183 3 chr3 74372009 74372392 -143664766 + LTR47A LTR ERVL 1 452 0 335 375 59 22 chr3 74372991 74373346 -143663812 + ERVL LTR ERVL 3936 4303 -1461 751 341 57 22 chr3 74373357 74373880 -143663278 - L2 LINE L2 -142 3171 2619 2185 88 0 0 chr3 74373880 74374192 -143662966 - AluY SINE Alu 0 312 1 751 341 57 22 chr3 74374192 74374287 -143662871 - L2 LINE L2 -694 2619 2529 186 43 0 0 chr3 74374287 74374310 -143662848 + (CA)n Simple_repeat Simple_repeat 1 23 0 186 324 14 28 chr3 74374329 74374400 -143662758 + L3 LINE CR1 1497 1566 -11 362 289 10 10 chr3 74375766 74375870 -143661288 - MIR SINE MIR -64 144 41 613 89 22 0 chr3 74376563 74376653 -143660505 - L1MA1 LINE L1 -4 6298 6207 1136 296 72 5 chr3 74376653 74377628 -143659530 - L1MEc LINE L1 -3334 2881 1877 22 0 0 0 chr3 74377922 74377944 -143659214 + AT_rich Low_complexity Low_complexity 1 22 0 288 0 0 0 chr3 74379858 74379890 -143657268 + (A)n Simple_repeat Simple_repeat 1 32 0 304 304 82 7 chr3 74380514 74380649 -143656509 - L3 LINE CR1 -189 1388 1244 786 315 96 17 chr3 74380657 74381063 -143656095 - L3 LINE CR1 -710 867 430 191 336 93 9 chr3 74381290 74381397 -143655761 - L3 LINE CR1 -1192 385 270 329 284 122 34 chr3 74381535 74381683 -143655475 + MER5B DNA MER1_type 13 173 -5 369 298 219 7 chr3 74382235 74382386 -143654772 + MER5A DNA MER1_type 7 189 0 393 318 56 31 chr3 74382537 74382732 -143654426 + MIR SINE MIR 57 256 -6 210 379 24 16 chr3 74382813 74382937 -143654221 + MIR3 SINE MIR 30 154 -54 1818 84 19 0 chr3 74383820 74384083 -143653075 + LTR19A LTR ERV1 1 268 -218 1743 128 126 92 chr3 74385054 74385468 -143651690 + MSTA LTR MaLR 1 428 0 532 368 40 9 chr3 74385852 74386200 -143650958 - MER66-int LTR ERV1 -233 6443 6085 657 337 40 47 chr3 74387498 74388300 -143648858 - MER66-int LTR ERV1 -1621 6135 5340 37052 35 28 1 chr3 74388696 74393284 -143643874 - L1P LINE L1 -1423 4723 13 1017 162 54 84 chr3 74393279 74393576 -143643582 - L1 LINE L1 -1498 4648 4361 * 21 0 0 0 chr3 74393890 74393911 -143643247 + AT_rich Low_complexity Low_complexity 1 21 0 1310 165 50 43 chr3 74394247 74394526 -143642632 - AluSg SINE Alu -19 281 1 22 0 0 0 chr3 74394535 74394557 -143642601 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr3 74395030 74395055 -143642103 + AT_rich Low_complexity Low_complexity 1 25 0 28 71 0 0 chr3 74395858 74395914 -143641244 + AT_rich Low_complexity Low_complexity 1 56 0 238 151 27 0 chr3 74395917 74395990 -143641168 + (TA)n Simple_repeat Simple_repeat 1 75 0 240 322 96 0 chr3 74396391 74396506 -143640652 - MIR3 SINE MIR -45 163 38 2325 60 7 3 chr3 74397235 74397535 -143639623 + AluY SINE Alu 1 301 -10 290 332 189 15 chr3 74397825 74398021 -143639137 - MIR SINE MIR -18 244 15 402 221 67 0 chr3 74399681 74399785 -143637373 + L1ME3A LINE L1 5949 6059 -111 238 257 18 18 chr3 74400817 74400926 -143636232 + (TATAA)n Simple_repeat Simple_repeat 2 110 0 28 48 0 0 chr3 74401201 74401243 -143635915 + AT_rich Low_complexity Low_complexity 1 42 0 1140 259 113 7 chr3 74401300 74401752 -143635406 - L1ME1 LINE L1 -3 6163 5664 5707 151 20 14 chr3 74402350 74403350 -143633808 - Tigger1 DNA MER2_type -293 2125 1120 683 233 78 11 chr3 74403626 74403806 -143633352 + LTR47A LTR ERVL 261 452 0 27 81 0 0 chr3 74404365 74404427 -143632731 + AT_rich Low_complexity Low_complexity 1 62 0 21 0 0 0 chr3 74404645 74404666 -143632492 + AT_rich Low_complexity Low_complexity 1 21 0 207 293 13 13 chr3 74405337 74405412 -143631746 - MIR SINE MIR -2 260 186 993 331 14 11 chr3 74405417 74405773 -143631385 - LTR16B LTR ERVL -74 390 34 352 245 41 20 chr3 74405817 74405915 -143631243 - MIR SINE MIR -79 183 84 192 295 151 43 chr3 74406630 74406769 -143630389 + MER5B DNA MER1_type 25 178 0 24 0 0 0 chr3 74406967 74406991 -143630167 + AT_rich Low_complexity Low_complexity 1 24 0 35 54 0 0 chr3 74408312 74408368 -143628790 + AT_rich Low_complexity Low_complexity 1 56 0 274 255 77 106 chr3 74408459 74408667 -143628491 - L2 LINE L2 0 3313 3112 327 275 64 0 chr3 74408681 74408790 -143628368 - HAL1 LINE L1 -136 2371 2256 234 0 0 0 chr3 74408825 74408851 -143628307 + (CA)n Simple_repeat Simple_repeat 2 27 0 204 40 0 0 chr3 74408851 74408876 -143628282 + (TG)n Simple_repeat Simple_repeat 1 25 0 23 54 0 0 chr3 74409195 74409232 -143627926 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr3 74409470 74409500 -143627658 + AT_rich Low_complexity Low_complexity 1 30 0 330 67 0 0 chr3 74410098 74410143 -143627015 + (CA)n Simple_repeat Simple_repeat 2 46 0 2385 168 7 18 chr3 74410337 74410777 -143626381 + MER65A LTR ERV1 3 437 -8 297 0 0 0 chr3 74411082 74411115 -143626043 + (A)n Simple_repeat Simple_repeat 1 33 0 2055 129 3 3 chr3 74411373 74411682 -143625476 + AluSx SINE Alu 2 310 -2 699 149 0 0 chr3 74411697 74411818 -143625340 + (TTCC)n Simple_repeat Simple_repeat 2 122 0 239 272 19 95 chr3 74412337 74412495 -143624663 - HAL1 LINE L1 -1063 1444 1299 1364 212 44 9 chr3 74412495 74412881 -143624277 + MER44D DNA MER2_type 13 460 -245 1335 212 44 7 chr3 74412950 74413224 -143623934 + MER44D DNA MER2_type 449 604 -1 330 311 144 20 chr3 74413231 74413688 -143623470 - HAL1 LINE L1 -1218 1289 776 189 102 0 61 chr3 74415007 74415056 -143622102 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 3145 115 88 8 chr3 74415628 74416116 -143621042 - MER1A DNA MER1_type 0 527 1 351 211 60 17 chr3 74416157 74416272 -143620886 + LTR37B LTR ERV1 302 467 -1 1895 153 6 10 chr3 74417921 74418234 -143618924 + AluJb SINE Alu 1 312 0 927 275 60 18 chr3 74421622 74421953 -143615205 - LTR16C LTR ERVL 0 491 147 242 289 33 11 chr3 74422209 74422299 -143614859 - MER69 DNA AcHobo -2307 219 128 339 187 22 88 chr3 74422622 74422713 -143614445 - MER20 DNA MER1_type -3 216 132 299 316 44 15 chr3 74422728 74422864 -143614294 - LTR16C LTR ERVL 0 491 352 624 127 0 27 chr3 74423640 74423750 -143613408 + AluY SINE Alu 200 306 -5 312 233 89 20 chr3 74423971 74424117 -143613041 - MER103 DNA DNA -9 157 2 1278 248 37 0 chr3 74424378 74424676 -143612482 + AluJo SINE Alu 1 309 -3 233 344 136 0 chr3 74424747 74424872 -143612286 + MIR SINE MIR 107 248 -14 230 296 59 40 chr3 74425534 74425686 -143611472 - L2 LINE L2 0 3313 3159 7346 51 0 5 chr3 74425808 74426750 -143610408 - L1P LINE L1 -3965 2181 1245 6010 84 23 1 chr3 74426752 74427572 -143609586 + L1P LINE L1 7 844 -5302 1286 206 10 75 chr3 74427558 74427754 -143609404 - L1M4 LINE L1 -3046 3100 2944 * 2120 103 10 7 chr3 74427754 74428055 -143609103 - AluSc SINE Alu -6 303 2 1286 206 10 75 chr3 74428055 74428271 -143608887 - L1M4 LINE L1 -3202 2944 2715 643 352 63 25 chr3 74431816 74432259 -143604899 - L3 LINE CR1 -67 1510 1051 1714 164 17 14 chr3 74432389 74432682 -143604476 + AluJb SINE Alu 1 294 -18 960 305 203 18 chr3 74432818 74433295 -143603863 + L2 LINE L2 332 720 -2594 2230 141 8 19 chr3 74433295 74433663 -143603495 - THE1B LTR MaLR 0 364 1 960 305 203 18 chr3 74433663 74433841 -143603317 + L2 LINE L2 720 1108 -2206 443 297 90 92 chr3 74433877 74434342 -143602816 + L2 LINE L2 2850 3313 0 609 281 74 22 chr3 74434627 74434897 -143602261 + MARNA DNA Mariner 178 461 -125 27 0 0 0 chr3 74435418 74435445 -143601713 + AT_rich Low_complexity Low_complexity 1 27 0 1386 174 45 11 chr3 74436556 74436862 -143600296 - L1MC2 LINE L1 -26 6318 6024 302 67 22 0 chr3 74436862 74436907 -143600251 + (TA)n Simple_repeat Simple_repeat 1 46 0 1386 174 45 11 chr3 74436907 74437384 -143599774 - L1MC2 LINE L1 -320 6024 5328 843 290 80 52 chr3 74437577 74437977 -143599181 + MLT1J1 LTR MaLR 36 446 0 22 0 0 0 chr3 74438668 74438690 -143598468 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 74438912 74438933 -143598225 + AT_rich Low_complexity Low_complexity 1 21 0 2338 47 0 50 chr3 74438944 74439265 -143597893 + AluY SINE Alu 1 305 -6 2645 143 24 62 chr3 74440543 74441088 -143596070 + L1MA8 LINE L1 5617 6140 -151 757 53 0 0 chr3 74441085 74441180 -143595978 - L1PA3 LINE L1 -55 6100 6006 * 343 0 68 0 chr3 74441180 74441223 -143595935 + L1PA4 LINE L1 6102 6148 -7 240 59 0 0 chr3 74441223 74441257 -143595901 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 2023 102 0 32 chr3 74441302 74441615 -143595543 + AluY SINE Alu 1 303 -8 655 181 31 25 chr3 74441616 74441776 -143595382 + L1MA8 LINE L1 6131 6291 0 431 268 41 0 chr3 74441814 74441937 -143595221 - L1M4 LINE L1 -1944 4202 4075 205 200 0 0 chr3 74442168 74442203 -143594955 + (TG)n Simple_repeat Simple_repeat 2 36 0 3566 279 106 29 chr3 74442654 74442890 -143594268 + MLT1J1-int LTR MaLR 282 498 -1237 1609 139 124 64 chr3 74442890 74443294 -143593864 - MSTA LTR MaLR 0 428 1 3566 279 106 29 chr3 74443294 74444388 -143592770 + MLT1J1-int LTR MaLR 498 1714 -21 22 0 0 0 chr3 74444415 74444437 -143592721 + AT_rich Low_complexity Low_complexity 1 22 0 4692 225 20 17 chr3 74444613 74445201 -143591957 + L1MA9 LINE L1 4038 4623 -1523 938 57 0 0 chr3 74445201 74445324 -143591834 + L1PA5 LINE L1 6032 6154 0 4692 225 20 17 chr3 74445324 74445950 -143591208 + L1MA9 LINE L1 4623 5255 -891 2212 143 3 14 chr3 74445950 74446307 -143590851 - THE1C LTR MaLR 0 375 23 2427 123 13 85 chr3 74446409 74446525 -143590633 + L1PB2 LINE L1 5713 5836 -315 369 0 0 0 chr3 74446525 74446566 -143590592 + (TA)n Simple_repeat Simple_repeat 1 41 0 2427 123 13 85 chr3 74446566 74446920 -143590238 + L1PB2 LINE L1 5836 6149 -2 346 191 0 0 chr3 74446996 74447059 -143590099 + L1MA9 LINE L1 5717 5779 -533 1012 234 56 36 chr3 74447060 74447364 -143589794 + L1MA9 LINE L1 5968 6277 -35 32 43 0 0 chr3 74447419 74447465 -143589693 + AT_rich Low_complexity Low_complexity 1 46 0 31 76 0 0 chr3 74447609 74447675 -143589483 + AT_rich Low_complexity Low_complexity 1 66 0 25 0 0 0 chr3 74448003 74448028 -143589130 + AT_rich Low_complexity Low_complexity 1 25 0 555 315 20 15 chr3 74448492 74448689 -143588469 + LTR40a LTR ERVL 313 510 -9 1059 258 132 57 chr3 74449003 74449527 -143587631 + HERVL40 LTR ERVL 935 1497 -4033 194 250 68 0 chr3 74449710 74449754 -143587404 + L2 LINE L2 3263 3309 -4 21 82 0 0 chr3 74451331 74451380 -143585778 + AT_rich Low_complexity Low_complexity 1 49 0 2115 116 0 0 chr3 74451472 74451764 -143585394 + AluY SINE Alu 1 292 -19 7568 257 125 34 chr3 74451860 74455112 -143582046 + L1M2b LINE L1 1 3869 -3339 7307 46 0 4 chr3 74455112 74456112 -143581046 + L1PA5 LINE L1 5159 6154 0 7568 257 125 34 chr3 74456112 74456290 -143580868 + L1M2b LINE L1 3869 4029 -3179 207 204 0 182 chr3 74456396 74456484 -143580674 + L2 LINE L2 3242 3313 0 258 132 29 15 chr3 74457367 74457435 -143579723 + (TA)n Simple_repeat Simple_repeat 2 70 0 292 327 62 0 chr3 74457938 74458051 -143579107 + L2 LINE L2 3145 3264 -8 1899 157 28 0 chr3 74458052 74458339 -143578819 + AluJb SINE Alu 2 296 -16 6348 217 43 11 chr3 74458554 74459496 -143577662 + L1 LINE L1 2714 3624 -2522 456 35 0 0 chr3 74459496 74459554 -143577604 + (CA)n Simple_repeat Simple_repeat 2 59 0 6348 217 43 11 chr3 74459554 74459579 -143577579 + L1 LINE L1 3624 3647 -2499 1850 149 149 11 chr3 74459579 74459955 -143577203 - MSTA LTR MaLR 0 428 1 6348 217 43 11 chr3 74459955 74460629 -143576529 + L1 LINE L1 3647 4409 -1737 797 266 115 57 chr3 74460840 74460973 -143576185 + MLT1D LTR MaLR 1 125 -380 2562 45 0 3 chr3 74460973 74461284 -143575874 - AluY SINE Alu -1 310 1 797 266 115 57 chr3 74461284 74461627 -143575531 + MLT1D LTR MaLR 125 505 0 235 271 43 71 chr3 74461632 74461772 -143575386 + L2 LINE L2 3066 3201 -112 21 0 0 0 chr3 74462284 74462305 -143574853 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr3 74462712 74462739 -143574419 + AT_rich Low_complexity Low_complexity 1 27 0 260 222 14 0 chr3 74462741 74462813 -143574345 + (CA)n Simple_repeat Simple_repeat 1 73 0 458 289 0 9 chr3 74463660 74463774 -143573384 - L2 LINE L2 -10 3303 3191 1122 256 62 20 chr3 74463834 74464139 -143573019 - MLT1A1 LTR MaLR 0 365 48 1256 190 6 52 chr3 74464240 74464566 -143572592 + L1 LINE L1 4490 4800 -1346 1949 159 141 5 chr3 74464566 74464943 -143572215 + MSTA LTR MaLR 1 428 0 3547 167 30 24 chr3 74464943 74465609 -143571549 + MSTA-int LTR MaLR 1 670 -981 359 374 0 23 chr3 74465740 74465871 -143571287 + L2 LINE L2 3137 3264 -8 399 141 26 0 chr3 74466201 74466279 -143570879 + MADE1 DNA Mariner 1 80 0 222 37 0 0 chr3 74466656 74466683 -143570475 + (TG)n Simple_repeat Simple_repeat 2 28 0 427 298 0 0 chr3 74467189 74467303 -143569855 - L2 LINE L2 0 3313 3200 797 226 53 5 chr3 74467319 74467509 -143569649 + MER3 DNA MER1_type 7 205 -4 2139 131 0 0 chr3 74468500 74468798 -143568360 - AluSx SINE Alu -14 298 1 234 193 0 0 chr3 74469272 74469329 -143567829 + (TA)n Simple_repeat Simple_repeat 2 58 0 264 30 0 0 chr3 74469364 74469397 -143567761 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1881 144 4 0 chr3 74469397 74469675 -143567483 - AluSx SINE Alu -33 279 1 234 219 109 77 chr3 74470069 74470252 -143566906 + L1MC5 LINE L1 7501 7689 -272 1749 108 61 0 chr3 74470521 74470799 -143566359 - L1PA11 LINE L1 -3 6171 5877 236 178 0 0 chr3 74471502 74471547 -143565611 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 327 325 47 18 chr3 74472482 74472651 -143564507 - L2 LINE L2 -457 2857 2684 23 33 0 0 chr3 74473828 74473858 -143563300 + AT_rich Low_complexity Low_complexity 1 30 0 731 162 19 10 chr3 74474270 74474482 -143562676 + GA-rich Low_complexity Low_complexity 1 214 0 1225 73 11 6 chr3 74474934 74474949 -143562209 + (GAAA)n Simple_repeat Simple_repeat 1 194 0 1225 73 11 6 chr3 74474949 74475127 -143562031 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 24 0 0 0 chr3 74475537 74475561 -143561597 + AT_rich Low_complexity Low_complexity 1 24 0 270 0 0 0 chr3 74476496 74476526 -143560632 + (A)n Simple_repeat Simple_repeat 1 30 0 4656 175 37 8 chr3 74477051 74477987 -143559171 + L1MA9 LINE L1 5339 6302 -10 26 55 0 41 chr3 74477987 74478060 -143559098 + AT_rich Low_complexity Low_complexity 1 70 0 196 319 28 60 chr3 74479498 74479680 -143557478 - L2 LINE L2 -660 2654 2479 225 200 22 0 chr3 74482390 74482408 -143554750 + MER3 DNA MER1_type 29 47 -162 695 215 38 43 chr3 74482408 74482617 -143554541 - MER3 DNA MER1_type 0 209 2 2488 65 0 3 chr3 74482643 74482953 -143554205 - AluY SINE Alu -2 309 1 27 0 0 0 chr3 74483593 74483620 -143553538 + AT_rich Low_complexity Low_complexity 1 27 0 2444 70 0 6 chr3 74484025 74484337 -143552821 - AluY SINE Alu -1 310 1 1807 156 3 7 chr3 74484422 74484723 -143552435 - AluSx SINE Alu -12 300 1 279 0 0 0 chr3 74485602 74485633 -143551525 + (TC)n Simple_repeat Simple_repeat 2 32 0 295 325 98 12 chr3 74485686 74485849 -143551309 - MIR SINE MIR -58 204 28 313 277 0 12 chr3 74486335 74486418 -143550740 + GA-rich Low_complexity Low_complexity 3 84 0 313 60 20 0 chr3 74486443 74486493 -143550665 - L1PB1 LINE L1 0 6151 6101 1869 158 0 7 chr3 74486907 74487211 -143549947 - AluSx SINE Alu -10 302 1 678 200 93 0 chr3 74487664 74487814 -143549344 - MER5A DNA MER1_type -22 167 4 22 0 0 0 chr3 74488949 74488971 -143548187 + AT_rich Low_complexity Low_complexity 1 22 0 335 226 20 29 chr3 74488988 74489090 -143548068 - MLT1J1 LTR MaLR -6 440 340 872 232 85 20 chr3 74489216 74489639 -143547519 + Charlie1b DNA MER1_type 43 522 -1 316 400 21 0 chr3 74490133 74490278 -143546880 + MER91A DNA MER1_type 9 156 -40 221 345 0 0 chr3 74490305 74490360 -143546798 + MER91A DNA MER1_type 142 196 0 264 288 0 0 chr3 74490390 74490449 -143546709 + L2 LINE L2 3251 3309 -4 * 456 327 14 41 chr3 74490438 74490584 -143546574 + L3 LINE CR1 536 676 -901 2410 69 0 7 chr3 74490584 74490887 -143546271 + AluY SINE Alu 1 301 -10 456 327 14 41 chr3 74490887 74490960 -143546198 + L3 LINE CR1 676 749 -828 467 210 32 48 chr3 74491688 74491812 -143545346 + FLAM_A SINE Alu 1 122 -11 904 191 6 0 chr3 74492219 74492403 -143544755 - AluJo SINE Alu 0 304 120 198 167 0 0 chr3 74492404 74492440 -143544718 + CT-rich Low_complexity Low_complexity 1 36 0 844 154 0 0 chr3 74492440 74492576 -143544582 - FLAM_C SINE Alu -1 142 7 435 282 77 62 chr3 74493977 74494172 -143542986 - MLT1J1 LTR MaLR -248 198 1 289 339 78 60 chr3 74494693 74495106 -143542052 - L2 LINE L2 -673 2641 2222 9700 233 39 38 chr3 74495641 74498202 -143538956 + L1M2a LINE L1 1 2202 -4965 2288 100 0 0 chr3 74498202 74498501 -143538657 + AluSc SINE Alu 1 299 -10 9700 233 39 38 chr3 74498501 74500169 -143536989 + L1M2a LINE L1 2202 3868 -3299 533 295 35 0 chr3 74500299 74500324 -143536834 - MLT2C1 LTR ERVL -196 201 178 566 187 8 32 chr3 74500324 74500447 -143536711 - MLT1E3 LTR MaLR -436 188 69 533 295 35 0 chr3 74500447 74500472 -143536686 - MLT2C1 LTR ERVL -219 178 23 249 350 40 0 chr3 74500507 74500607 -143536551 - L2 LINE L2 -1047 2267 2164 342 0 0 0 chr3 74500672 74500710 -143536448 + (CA)n Simple_repeat Simple_repeat 2 39 0 232 241 17 0 chr3 74502001 74502059 -143535099 + GA-rich Low_complexity Low_complexity 3 61 0 523 237 0 8 chr3 74502134 74502252 -143534906 - MLT1C LTR MaLR 0 467 351 358 247 39 110 chr3 74502353 74502507 -143534651 + MIR SINE MIR 109 251 -11 294 73 0 0 chr3 74503675 74503716 -143533442 + (CATA)n Simple_repeat Simple_repeat 4 44 0 370 271 61 77 chr3 74503788 74503969 -143533189 + MER5B DNA MER1_type 1 178 0 355 267 15 15 chr3 74506370 74506501 -143530657 + L1ME2 LINE L1 6034 6164 0 1030 313 48 7 chr3 74506502 74506921 -143530237 - L2 LINE L2 -588 2726 2291 349 392 15 0 chr3 74506927 74507057 -143530101 - L2 LINE L2 -1166 2148 2017 581 342 113 19 chr3 74507089 74507557 -143529601 + L2 LINE L2 1630 2141 -1173 379 350 60 20 chr3 74507614 74507814 -143529344 + MIR SINE MIR 4 211 -51 557 316 90 48 chr3 74507830 74508308 -143528850 + L2 LINE L2 2203 2700 -614 2253 85 3 25 chr3 74508350 74508667 -143528491 + AluY SINE Alu 1 310 -1 21 36 0 0 chr3 74508667 74508695 -143528463 + AT_rich Low_complexity Low_complexity 1 28 0 350 343 48 80 chr3 74508877 74509189 -143527969 + L2 LINE L2 2969 3270 -2 992 231 73 70 chr3 74509516 74509627 -143527531 - MER39 LTR ERV1 -25 682 573 2449 195 20 102 chr3 74509627 74510380 -143526778 - LTR8 LTR ERV1 0 691 1 992 231 73 70 chr3 74510380 74510415 -143526743 - MER39 LTR ERV1 -134 573 540 2389 61 0 3 chr3 74510415 74510708 -143526450 - AluY SINE Alu -19 292 1 992 231 73 70 chr3 74510708 74511012 -143526146 - MER39 LTR ERV1 -167 540 67 234 0 0 0 chr3 74511686 74511712 -143525446 + (A)n Simple_repeat Simple_repeat 1 26 0 275 286 0 39 chr3 74513966 74514043 -143523115 - L2 LINE L2 -6 3266 3193 413 255 189 46 chr3 74514371 74514524 -143522634 + MER5B DNA MER1_type 2 176 -2 406 360 67 26 chr3 74514864 74515294 -143521864 + L2 LINE L2 789 1236 -2078 1643 295 134 63 chr3 74515470 74516885 -143520273 + L2 LINE L2 1606 3205 -108 3034 103 19 0 chr3 74516887 74517366 -143519792 - MLT2A1 LTR ERVL 0 444 1 293 360 103 26 chr3 74517485 74517949 -143519209 + L2 LINE L2 1410 1909 -1405 287 378 32 27 chr3 74518070 74518258 -143518900 - MIR SINE MIR -69 193 5 426 352 176 31 chr3 74518300 74519038 -143518120 + L2 LINE L2 2070 2914 -400 21 82 0 0 chr3 74519358 74519407 -143517751 + AT_rich Low_complexity Low_complexity 1 49 0 1788 193 22 14 chr3 74519958 74520320 -143516838 + MLT1A1 LTR MaLR 1 365 0 2359 82 0 0 chr3 74520377 74520671 -143516487 + AluY SINE Alu 1 294 -17 24 0 0 0 chr3 74521395 74521419 -143515739 + AT_rich Low_complexity Low_complexity 1 24 0 4946 86 11 37 chr3 74521515 74522221 -143514937 + LTR12 LTR ERV1 1 688 0 1511 79 116 14 chr3 74522416 74522631 -143514527 + LTR12 LTR ERV1 65 301 -413 425 191 32 0 chr3 74522693 74522787 -143514371 - MLT1F1 LTR MaLR 0 567 471 5678 85 60 1 chr3 74522990 74523770 -143513388 - LTR12 LTR ERV1 0 826 1 861 287 64 42 chr3 74524005 74524756 -143512402 - MLT1F1-int LTR MaLR -489 882 1 1066 274 62 79 chr3 74524756 74525227 -143511931 - MLT1F1 LTR MaLR 0 567 105 1439 131 5 0 chr3 74525247 74525445 -143511713 - AluSg SINE Alu -111 199 1 1802 199 9 107 chr3 74525579 74526138 -143511020 + MLT1D LTR MaLR 1 504 -1 2053 209 24 5 chr3 74526381 74526798 -143510360 + MSTB LTR MaLR 2 426 0 2940 192 31 7 chr3 74526838 74527421 -143509737 + MSTB-int LTR MaLR 26 622 -1029 * 4373 200 5 3 chr3 74527407 74528181 -143508977 + MSTB-int LTR MaLR 876 1651 0 2107 199 27 5 chr3 74528182 74528583 -143508575 + MSTB LTR MaLR 2 411 -15 389 213 0 43 chr3 74528593 74528687 -143508471 + L1MC4 LINE L1 6614 6703 -1339 196 148 0 56 chr3 74528719 74528773 -143508385 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 2179 111 10 7 chr3 74529729 74530026 -143507132 + AluSc SINE Alu 1 298 -11 22 35 0 0 chr3 74530347 74530376 -143506782 + AT_rich Low_complexity Low_complexity 1 29 0 282 137 20 0 chr3 74530626 74530677 -143506481 + MADE1 DNA Mariner 1 52 -28 641 211 0 23 chr3 74531377 74531510 -143505648 - MLT1F1-int LTR MaLR -67 1668 1539 * 1034 183 40 0 chr3 74531509 74531711 -143505447 - MLT1A1-int LTR MaLR -1525 210 1 1002 285 51 31 chr3 74531715 74532069 -143505089 - MLT1A1 LTR MaLR -4 361 1 191 170 21 0 chr3 74532185 74532232 -143504926 + (TA)n Simple_repeat Simple_repeat 1 48 0 3302 163 54 0 chr3 74532499 74533071 -143504087 - LTR26 LTR ERV1 0 603 1 333 224 40 26 chr3 74533341 74533417 -143503741 + MER91 DNA MER1_type 2 63 -77 322 287 84 56 chr3 74533512 74533833 -143503325 + L1ME3A LINE L1 4211 4540 -1606 908 321 76 15 chr3 74534112 74534900 -143502258 + L1ME3A LINE L1 5016 5851 -319 255 31 0 0 chr3 74534985 74535017 -143502141 + (CA)n Simple_repeat Simple_repeat 1 32 0 216 232 30 0 chr3 74535116 74535215 -143501943 + (TA)n Simple_repeat Simple_repeat 1 102 0 236 308 26 17 chr3 74537029 74537146 -143500012 - MER70B LTR ERVL -2 576 459 195 41 61 61 chr3 74537619 74537668 -143499490 + T-rich Low_complexity Low_complexity 3 51 0 281 333 42 0 chr3 74537684 74537804 -143499354 + L3 LINE CR1 1292 1416 -161 1091 295 51 30 chr3 74538823 74539352 -143497806 + L1MC5 LINE L1 5417 5956 -1852 1413 242 105 70 chr3 74539977 74540970 -143496188 + L1MC5 LINE L1 6725 7752 -209 244 208 19 0 chr3 74541015 74541068 -143496090 - LTR16C LTR ERVL 0 491 438 262 226 75 66 chr3 74541380 74541486 -143495672 + L1MC5 LINE L1 7803 7909 -52 192 77 0 0 chr3 74541865 74541891 -143495267 + (GAAAA)n Simple_repeat Simple_repeat 1 26 0 358 309 64 19 chr3 74542197 74542247 -143494911 + MIR SINE MIR 25 71 -185 2408 72 0 0 chr3 74542247 74542540 -143494618 - AluSc SINE Alu -16 293 1 358 309 64 19 chr3 74542540 74542668 -143494490 + MIR SINE MIR 71 198 -58 210 135 0 0 chr3 74543020 74543047 -143494111 + (TTTC)n Simple_repeat Simple_repeat 3 32 -7 609 105 114 18 chr3 74543047 74543161 -143493997 - L1PA13 LINE L1 0 6163 6039 210 135 0 0 chr3 74543161 74543170 -143493988 + (TTTC)n Simple_repeat Simple_repeat 31 39 0 678 140 0 1 chr3 74543369 74543487 -143493671 - MLT1D LTR MaLR 0 505 351 943 207 17 0 chr3 74543493 74543672 -143493486 - MSTD LTR MaLR 0 396 215 296 242 0 33 chr3 74548253 74548344 -143488814 + CT-rich Low_complexity Low_complexity 3 90 0 232 331 71 19 chr3 74548757 74548911 -143488247 + MER5A DNA MER1_type 27 188 -1 30 45 0 0 chr3 74549047 74549091 -143488067 + AT_rich Low_complexity Low_complexity 1 44 0 347 239 7 17 chr3 74549733 74549873 -143487285 + MLT1J2 LTR MaLR 37 135 -315 25 51 0 0 chr3 74550459 74550498 -143486660 + AT_rich Low_complexity Low_complexity 1 39 0 240 35 0 0 chr3 74551449 74551478 -143485680 + (TG)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr3 74551745 74551768 -143485390 + AT_rich Low_complexity Low_complexity 1 23 0 227 350 0 0 chr3 74555452 74555512 -143481646 + L2 LINE L2 3211 3270 -2 25 0 0 0 chr3 74555639 74555664 -143481494 + AT_rich Low_complexity Low_complexity 1 25 0 189 107 0 0 chr3 74555979 74556007 -143481151 + L2 LINE L2 3278 3305 -8 197 65 32 0 chr3 74556092 74556123 -143481035 + (GA)n Simple_repeat Simple_repeat 2 33 0 306 0 0 0 chr3 74557421 74557455 -143479703 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 226 298 0 0 chr3 74557864 74557948 -143479210 - L1MC4 LINE L1 -1346 6696 6613 309 135 0 0 chr3 74557948 74558000 -143479158 + (TA)n Simple_repeat Simple_repeat 1 52 0 210 287 74 25 chr3 74558848 74558970 -143478188 + L2 LINE L2 3145 3272 0 2162 109 0 3 chr3 74559038 74559332 -143477826 - AluSg SINE Alu -17 293 1 337 20 20 20 chr3 74559382 74559433 -143477725 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2209 71 0 4 chr3 74559435 74559715 -143477443 - AluY SINE Alu -32 279 1 408 283 38 9 chr3 74559715 74559821 -143477337 - L2 LINE L2 -7 3306 3198 466 343 68 13 chr3 74560144 74560509 -143476649 - LTR16A LTR ERVL -5 445 1 576 356 54 29 chr3 74560653 74561231 -143475927 - HERVL LTR ERVL -324 5330 4739 289 280 14 0 chr3 74561286 74561377 -143475781 - HERVL LTR ERVL -880 4605 4536 355 167 17 0 chr3 74561495 74561555 -143475603 - MER45 DNA AcHobo -1 1580 1520 810 327 91 29 chr3 74561625 74562414 -143474744 - HERVL LTR ERVL -1213 4272 3574 2017 192 137 24 chr3 74562464 74562496 -143474662 - MLT2B1 LTR ERVL -9 511 484 516 32 0 0 chr3 74562496 74562558 -143474600 + (GA)n Simple_repeat Simple_repeat 1 62 0 2017 192 137 24 chr3 74562558 74562771 -143474387 - MLT2B1 LTR ERVL -36 484 297 2181 148 11 14 chr3 74562771 74563136 -143474022 + THE1B LTR MaLR 1 364 0 2017 192 137 24 chr3 74563136 74563348 -143473810 - MLT2B1 LTR ERVL -223 297 1 1799 341 85 16 chr3 74563390 74564692 -143472466 - HERVL LTR ERVL -2310 3454 2013 2488 57 0 0 chr3 74564867 74565163 -143471995 - AluY SINE Alu -15 296 1 192 356 39 113 chr3 74565704 74566041 -143471117 - L2 LINE L2 -45 3227 2916 239 334 36 27 chr3 74568146 74568292 -143468866 + MIR SINE MIR 48 192 -16 766 182 68 6 chr3 74568897 74569073 -143468085 + MER53 DNA DNA 1 187 -2 21 36 0 0 chr3 74569611 74569639 -143467519 + AT_rich Low_complexity Low_complexity 1 28 0 800 225 10 3 chr3 74569652 74569951 -143467207 + GA-rich Low_complexity Low_complexity 1 301 0 21 0 0 0 chr3 74571234 74571255 -143465903 + AT_rich Low_complexity Low_complexity 1 21 0 504 207 80 59 chr3 74574123 74574313 -143462845 - MER20 DNA MER1_type -28 191 1 196 253 11 110 chr3 74575271 74575362 -143461796 - MIR3 SINE MIR -45 163 82 5289 164 99 11 chr3 74576727 74577522 -143459636 + Tigger3b DNA MER2_type 2 928 -2100 203 61 30 0 chr3 74577522 74577555 -143459603 + (CTCA)n Simple_repeat Simple_repeat 1 34 0 5289 164 99 11 chr3 74577555 74577888 -143459270 + Tigger3b DNA MER2_type 928 1230 -1 1869 152 29 45 chr3 74577944 74578325 -143458833 + THE1C LTR MaLR 1 375 0 504 347 55 22 chr3 74578726 74579000 -143458158 + LTR16C LTR ERVL 74 356 -135 1683 173 42 3 chr3 74579010 74579316 -143457842 + MLT2D LTR ERVL 1 318 -96 186 43 0 0 chr3 74579588 74579611 -143457547 + (CA)n Simple_repeat Simple_repeat 1 23 0 184 292 101 45 chr3 74579803 74579892 -143457266 + L2 LINE L2 3199 3292 -21 1988 122 28 3 chr3 74579957 74580245 -143456913 + AluSg SINE Alu 1 295 -15 269 233 14 0 chr3 74580797 74580870 -143456288 + (TA)n Simple_repeat Simple_repeat 1 74 0 196 213 33 33 chr3 74580954 74581015 -143456143 + MIR SINE MIR 137 197 -65 22 88 0 0 chr3 74582661 74582718 -143454440 + AT_rich Low_complexity Low_complexity 1 57 0 1294 260 17 39 chr3 74584989 74585500 -143451658 + L1ME2 LINE L1 5667 6312 0 197 297 88 11 chr3 74585507 74585598 -143451560 - MIR SINE MIR -70 192 95 2565 52 0 3 chr3 74586188 74586517 -143450641 - L1PA4 LINE L1 0 6155 5828 42 36 0 0 chr3 74588979 74589035 -143448123 + AT_rich Low_complexity Low_complexity 1 56 0 253 198 135 42 chr3 74590840 74590936 -143446222 + LTR68 LTR ERV1 189 293 -447 723 187 90 18 chr3 74591176 74591324 -143445834 - L1MA9 LINE L1 0 6312 6149 435 38 0 0 chr3 74591324 74591377 -143445781 + (TG)n Simple_repeat Simple_repeat 1 53 0 723 187 90 18 chr3 74591377 74591394 -143445764 - L1MA9 LINE L1 -163 6149 6135 2090 118 3 3 chr3 74591768 74592064 -143445094 + AluSc SINE Alu 1 296 -13 1666 216 102 100 chr3 74592085 74592783 -143444375 + L1ME2 LINE L1 5456 6154 -10 685 283 45 0 chr3 74593438 74593636 -143443522 + MER58A DNA MER1_type 2 208 -16 219 36 0 0 chr3 74593645 74593673 -143443485 + (CAA)n Simple_repeat Simple_repeat 2 29 0 32 0 0 0 chr3 74593721 74593753 -143443405 + AT_rich Low_complexity Low_complexity 1 32 0 237 363 57 36 chr3 74594414 74594607 -143442551 + MIR3 SINE MIR 3 199 -9 833 255 181 52 chr3 74594867 74595469 -143441689 + L2 LINE L2 2646 3309 -4 185 304 88 49 chr3 74595702 74595804 -143441354 - L2 LINE L2 -35 3278 3173 29 0 0 0 chr3 74597246 74597275 -143439883 + AT_rich Low_complexity Low_complexity 1 29 0 243 297 31 0 chr3 74597458 74597522 -143439636 + L2 LINE L2 3206 3271 -1 359 287 32 0 chr3 74598380 74598474 -143438684 - MER91A DNA MER1_type -87 109 13 1653 124 4 0 chr3 74598670 74598920 -143438238 - LTR24B LTR ERV1 -5 571 321 2497 126 18 15 chr3 74598936 74599334 -143437824 - LTR24B LTR ERV1 -177 399 1 393 282 24 16 chr3 74599339 74599463 -143437695 - MIR SINE MIR -89 173 49 267 215 125 21 chr3 74599530 74599674 -143437484 - L1ME4a LINE L1 -1 6120 5962 365 62 0 0 chr3 74599773 74599821 -143437337 + U5 snRNA snRNA 1 48 -68 315 281 51 75 chr3 74599984 74600198 -143436960 - L1ME4a LINE L1 -515 5606 5388 369 86 0 0 chr3 74600198 74600256 -143436902 + (TA)n Simple_repeat Simple_repeat 2 59 0 2288 106 0 0 chr3 74600256 74600557 -143436601 - AluSc SINE Alu -8 301 1 315 281 51 75 chr3 74600557 74600594 -143436564 - L1ME4a LINE L1 -731 5390 5360 1972 151 0 0 chr3 74601720 74602019 -143435139 + AluSx SINE Alu 5 303 -9 2181 125 0 10 chr3 74603107 74603419 -143433739 + AluSx SINE Alu 1 309 -3 526 260 68 0 chr3 74603507 74603653 -143433505 - MIR SINE MIR -26 236 81 687 244 28 96 chr3 74603834 74604139 -143433019 + L1MB7 LINE L1 5896 6182 -2 603 265 8 107 chr3 74605397 74605556 -143431602 + MIR SINE MIR 3 129 -133 2008 104 42 7 chr3 74605556 74605844 -143431314 + AluSx SINE Alu 1 298 -14 603 265 8 107 chr3 74605844 74605937 -143431221 + MIR SINE MIR 129 230 -32 221 292 231 0 chr3 74606063 74606193 -143430965 - L2 LINE L2 -552 2762 2603 245 307 80 23 chr3 74608499 74608587 -143428571 - L2 LINE L2 -6 3266 3174 2994 266 70 72 chr3 74608675 74608761 -143428397 + L1ME1 LINE L1 35 120 -6276 1291 224 110 20 chr3 74608761 74609216 -143427942 + LTR54B LTR ERV1 1 496 -2 2994 266 70 72 chr3 74609216 74610554 -143426604 + L1ME1 LINE L1 120 1459 -4937 2270 92 20 0 chr3 74610554 74610857 -143426301 + AluSc SINE Alu 1 309 0 2994 266 70 72 chr3 74610857 74611138 -143426020 + L1ME1 LINE L1 1459 1739 -4657 36 23 0 0 chr3 74611140 74611183 -143425975 + AT_rich Low_complexity Low_complexity 1 43 0 1996 138 3 0 chr3 74611209 74611499 -143425659 + AluSx SINE Alu 1 291 -21 346 230 88 18 chr3 74611532 74611645 -143425513 + L1M4 LINE L1 5082 5202 -944 260 255 87 27 chr3 74611630 74611779 -143425379 + L1ME1 LINE L1 1770 1927 -4469 * 2012 256 86 19 chr3 74611769 74612658 -143424500 + L1ME1 LINE L1 4804 5792 -443 611 180 58 7 chr3 74612658 74612797 -143424361 + L1MB1 LINE L1 6023 6168 0 2012 256 86 19 chr3 74612797 74613192 -143423966 + L1ME1 LINE L1 5792 6159 -76 186 167 0 0 chr3 74613192 74613228 -143423930 + (TA)n Simple_repeat Simple_repeat 2 37 0 836 118 8 0 chr3 74613294 74613421 -143423737 - L1MA1 LINE L1 -8 6294 6167 3874 91 8 7 chr3 74614256 74614812 -143422346 + MER41A LTR ERV1 1 554 0 3958 144 3 2 chr3 74615881 74616499 -143420659 - Tigger1 DNA MER2_type 0 2418 1800 294 29 0 0 chr3 74616502 74616537 -143420621 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 8015 139 33 15 chr3 74616538 74616685 -143420473 - Tigger1 DNA MER2_type -813 1605 1462 2198 62 3 28 chr3 74616685 74617011 -143420147 + AluY SINE Alu 1 319 0 8015 139 33 15 chr3 74617011 74618228 -143418930 - Tigger1 DNA MER2_type -956 1462 215 1237 141 8 50 chr3 74618340 74618581 -143418577 - Tigger1 DNA MER2_type -2187 231 1 1173 238 0 4 chr3 74618766 74619006 -143418152 + MER8 DNA MER2_type 1 239 0 225 83 0 0 chr3 74619791 74619827 -143417331 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 1543 183 42 0 chr3 74620254 74620389 -143416769 - AluSx SINE Alu -39 273 145 185 0 40 0 chr3 74620389 74620414 -143416744 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 1543 183 42 0 chr3 74620414 74620540 -143416618 - AluSx SINE Alu -167 145 1 22 35 0 0 chr3 74621187 74621216 -143415942 + AT_rich Low_complexity Low_complexity 1 29 0 247 273 0 0 chr3 74621743 74621798 -143415360 + (CATA)n Simple_repeat Simple_repeat 2 56 0 460 307 147 33 chr3 74623131 74623437 -143413721 - L2 LINE L2 -49 3264 2924 29 47 0 0 chr3 74623532 74623575 -143413583 + AT_rich Low_complexity Low_complexity 1 43 0 829 293 24 24 chr3 74623856 74624109 -143413049 + MLT2E LTR ERVL 19 271 -357 685 281 50 5 chr3 74624145 74624366 -143412792 + MLT2E LTR ERVL 359 589 -39 506 66 0 13 chr3 74624412 74624488 -143412670 + (TC)n Simple_repeat Simple_repeat 1 75 0 2744 13 0 0 chr3 74624909 74625213 -143411945 + AluYa5 SINE Alu 1 304 -7 21 0 0 0 chr3 74625479 74625500 -143411658 + AT_rich Low_complexity Low_complexity 1 21 0 307 371 141 36 chr3 74626073 74627312 -143409846 - L2 LINE L2 -193 3079 1706 1961 122 14 14 chr3 74627372 74627659 -143409499 - AluSx SINE Alu -13 299 13 381 331 38 8 chr3 74629106 74629239 -143407919 - MIR SINE MIR -56 152 16 599 280 0 42 chr3 74629254 74629468 -143407690 + MER3 DNA MER1_type 5 209 0 2347 106 0 0 chr3 74629741 74630095 -143407063 + AluSx SINE Alu 1 354 0 438 246 18 66 chr3 74631943 74632110 -143405048 - L3 LINE CR1 -284 1293 1135 245 316 53 32 chr3 74632115 74632305 -143404853 - L3 LINE CR1 -581 996 803 24 0 0 0 chr3 74632782 74632806 -143404352 + AT_rich Low_complexity Low_complexity 1 24 0 2454 47 0 28 chr3 74632956 74633274 -143403884 + AluY SINE Alu 1 309 -2 333 47 0 0 chr3 74634883 74634926 -143402232 + (TG)n Simple_repeat Simple_repeat 2 44 0 23 0 0 0 chr3 74635821 74635844 -143401314 + AT_rich Low_complexity Low_complexity 1 23 0 1073 116 26 7 chr3 74635845 74636000 -143401158 - AluSq SINE Alu -30 283 126 1378 254 26 11 chr3 74636321 74636672 -143400486 + MLT1A1 LTR MaLR 10 365 0 3581 294 138 50 chr3 74637053 74639195 -143397963 - L2 LINE L2 -380 2934 605 409 55 0 102 chr3 74639196 74639323 -143397835 + (GGAA)n Simple_repeat Simple_repeat 4 117 0 872 219 24 3 chr3 74639339 74639632 -143397526 + GA-rich Low_complexity Low_complexity 1 299 0 1174 211 38 13 chr3 74639760 74640070 -143397088 - MER33 DNA MER1_type -9 315 1 848 317 52 16 chr3 74640120 74640483 -143396675 - L2 LINE L2 -2902 412 37 2222 123 0 0 chr3 74640780 74641090 -143396068 + AluSg SINE Alu 1 310 0 2628 111 5 0 chr3 74641811 74642180 -143394978 - THE1C LTR MaLR -4 371 1 2683 35 0 10 chr3 74643768 74644082 -143393076 - AluY SINE Alu 0 311 1 206 61 0 30 chr3 74644583 74644616 -143392542 + (GA)n Simple_repeat Simple_repeat 1 32 0 351 0 0 0 chr3 74644747 74644786 -143392372 + (CA)n Simple_repeat Simple_repeat 2 40 0 304 221 116 23 chr3 74644975 74645061 -143392097 - MIR3 SINE MIR -30 178 85 216 320 13 13 chr3 74645110 74645185 -143391973 + L3 LINE CR1 922 996 -581 2927 171 8 6 chr3 74645464 74645991 -143391167 - L1P LINE L1 -2157 3989 3462 229 130 87 0 chr3 74645989 74646035 -143391123 + L1PA13 LINE L1 6110 6159 -4 * 21 36 0 0 chr3 74646035 74646063 -143391095 + AT_rich Low_complexity Low_complexity 1 28 0 238 209 78 43 chr3 74646064 74646179 -143390979 + HAL1b LINE L1 691 809 -539 195 42 0 0 chr3 74646974 74646998 -143390160 + (TTTTG)n Simple_repeat Simple_repeat 5 28 0 2098 123 0 0 chr3 74647831 74648124 -143389034 - AluSx SINE Alu -19 293 1 279 0 0 0 chr3 74648266 74648297 -143388861 + (CA)n Simple_repeat Simple_repeat 2 32 0 200 316 63 32 chr3 74649375 74649470 -143387688 + MIR SINE MIR 42 139 -69 500 293 25 13 chr3 74650369 74650526 -143386632 - MIR SINE MIR -72 190 32 21 0 0 0 chr3 74650952 74650973 -143386185 + AT_rich Low_complexity Low_complexity 1 21 0 616 159 23 0 chr3 74651410 74651542 -143385616 + GA-rich Low_complexity Low_complexity 3 137 0 1857 158 22 3 chr3 74653636 74653958 -143383200 - L1PB4 LINE L1 -6 6150 5823 2048 120 13 0 chr3 74654648 74654948 -143382210 + AluSx SINE Alu 1 304 -8 213 154 0 0 chr3 74654951 74654990 -143382168 + GA-rich Low_complexity Low_complexity 4 42 0 2821 112 32 13 chr3 74654991 74655456 -143381702 + L1MA1 LINE L1 5817 6290 -12 213 94 0 0 chr3 74655469 74655501 -143381657 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 423 0 0 0 chr3 74655661 74655708 -143381450 + (TG)n Simple_repeat Simple_repeat 1 47 0 264 323 136 83 chr3 74655851 74656538 -143380620 - L2 LINE L2 -557 2757 2007 498 86 0 0 chr3 74656538 74656608 -143380550 + L1MA1 LINE L1 6228 6297 -5 264 323 136 83 chr3 74656608 74656856 -143380302 - L2 LINE L2 -1307 2007 1773 4816 50 2 0 chr3 74658151 74658737 -143378421 - LTR14C LTR ERVK 0 587 1 345 381 68 16 chr3 74658955 74659207 -143377951 - L1MEc LINE L1 -6031 365 101 27 0 0 0 chr3 74659427 74659454 -143377704 + AT_rich Low_complexity Low_complexity 1 27 0 207 0 0 0 chr3 74662091 74662114 -143375044 + (TTG)n Simple_repeat Simple_repeat 2 24 0 29 28 0 0 chr3 74663123 74663159 -143373999 + AT_rich Low_complexity Low_complexity 1 36 0 27 0 0 0 chr3 74663253 74663280 -143373878 + AT_rich Low_complexity Low_complexity 1 27 0 300 143 36 83 chr3 74663429 74663513 -143373645 + L1MC4 LINE L1 6624 6703 -1339 21 0 0 0 chr3 74663826 74663847 -143373311 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 74663977 74663999 -143373159 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr3 74664031 74664059 -143373099 + AT_rich Low_complexity Low_complexity 1 28 0 184 282 39 39 chr3 74664721 74664824 -143372334 - L2 LINE L2 -61 3252 3150 575 284 66 78 chr3 74664873 74665193 -143371965 - L2 LINE L2 -7 3306 2991 181 419 11 0 chr3 74665227 74665320 -143371838 - L2 LINE L2 -396 2917 2824 1142 269 181 15 chr3 74665380 74665456 -143371702 - L2 LINE L2 -498 2816 2754 1789 149 58 28 chr3 74665456 74665818 -143371340 + THE1C LTR MaLR 1 373 -2 1142 269 181 15 chr3 74665818 74666281 -143370877 - L2 LINE L2 -560 2754 2187 305 309 64 55 chr3 74669300 74669520 -143367638 + L1ME4a LINE L1 5837 6058 -63 554 148 37 9 chr3 74669524 74669632 -143367526 + L1ME1 LINE L1 5765 5875 -291 298 221 180 16 chr3 74670119 74670241 -143366917 + L1MC4a LINE L1 7667 7808 0 22 70 0 0 chr3 74670241 74670284 -143366874 + AT_rich Low_complexity Low_complexity 1 43 0 749 286 42 23 chr3 74670284 74670589 -143366569 + L1ME1 LINE L1 5863 6334 0 2300 57 40 7 chr3 74670596 74670897 -143366261 + AluY SINE Alu 1 311 0 426 311 90 64 chr3 74670897 74671254 -143365904 + L1MC4a LINE L1 5637 6002 -1806 551 327 26 34 chr3 74671336 74671602 -143365556 + MLT1J LTR MaLR 8 271 -240 1163 119 0 0 chr3 74671672 74671831 -143365327 - AluSg/x SINE Alu -16 296 138 31 0 0 0 chr3 74671964 74671995 -143365163 + AT_rich Low_complexity Low_complexity 1 31 0 1258 197 78 62 chr3 74672958 74673328 -143363830 + MER39 LTR ERV1 305 680 -27 1533 124 14 0 chr3 74674226 74674444 -143362714 + AluSx SINE Alu 1 221 -91 2223 81 7 3 chr3 74675036 74675364 -143361794 + AluSp SINE Alu 1 329 0 771 230 79 18 chr3 74676604 74676882 -143360276 - LTR37A LTR ERV1 -3 423 129 234 0 0 0 chr3 74679178 74679204 -143357954 + (T)n Simple_repeat Simple_repeat 1 26 0 660 304 58 5 chr3 74679631 74679855 -143357303 + MLT1H LTR MaLR 313 548 -1 658 227 8 0 chr3 74680012 74680131 -143357027 + FLAM_C SINE Alu 2 121 -12 2898 87 37 16 chr3 74680594 74680976 -143356182 + MLT2A1 LTR ERVL 1 395 -49 276 30 0 0 chr3 74680976 74681009 -143356149 + (TG)n Simple_repeat Simple_repeat 2 34 0 2898 87 37 16 chr3 74681009 74681061 -143356097 + MLT2A1 LTR ERVL 395 444 0 584 209 16 82 chr3 74681156 74681338 -143355820 + LTR41 LTR ERVL 9 178 -595 2077 110 7 7 chr3 74681351 74681651 -143355507 + AluSx SINE Alu 1 300 -12 284 292 0 0 chr3 74682322 74682394 -143354764 - LTR16A1 LTR ERVL -12 445 374 237 65 0 0 chr3 74683875 74683906 -143353252 + (CA)n Simple_repeat Simple_repeat 2 32 0 1589 259 52 38 chr3 74683928 74684547 -143352611 - L1ME3 LINE L1 -155 6007 5375 1833 166 3 10 chr3 74684547 74684837 -143352321 - AluSx SINE Alu -18 294 7 1589 259 52 38 chr3 74684837 74684925 -143352233 - L1ME3 LINE L1 -787 5375 5290 1592 237 19 31 chr3 74684932 74685354 -143351804 + MLT2B1 LTR ERVL 26 442 -78 8505 147 20 43 chr3 74685556 74687170 -143349988 + MSTA-int LTR MaLR 3 1580 0 1009 130 75 0 chr3 74687170 74687331 -143349827 + MSTA LTR MaLR 1 173 -255 534 176 0 0 chr3 74687336 74687427 -143349731 + AluJ/FLAM SINE Alu 11 101 -211 467 195 12 0 chr3 74687527 74687609 -143349549 - AluJ/FLAM SINE Alu -226 86 4 31 0 0 0 chr3 74687945 74687976 -143349182 + AT_rich Low_complexity Low_complexity 1 31 0 260 239 14 0 chr3 74688185 74688256 -143348902 + (TAA)n Simple_repeat Simple_repeat 3 74 0 819 124 7 41 chr3 74688298 74688378 -143348780 - MER2 DNA MER2_type -85 260 186 1708 164 158 11 chr3 74688378 74688751 -143348407 - MSTA LTR MaLR 0 428 1 819 124 7 41 chr3 74688751 74688815 -143348343 - MER2 DNA MER2_type -159 186 121 1063 258 75 0 chr3 74688815 74689082 -143348076 + AluJo SINE Alu 1 287 -15 515 261 46 0 chr3 74689112 74689242 -143347916 - MER2 DNA MER2_type -209 136 1 441 309 0 100 chr3 74689253 74689473 -143347685 - MIR SINE MIR -62 200 3 342 0 0 0 chr3 74689588 74689626 -143347532 + (TG)n Simple_repeat Simple_repeat 1 38 0 195 100 0 0 chr3 74691219 74691249 -143345909 + (CA)n Simple_repeat Simple_repeat 2 31 0 762 175 105 65 chr3 74691249 74691449 -143345709 + MER2 DNA MER2_type 4 211 -134 210 128 0 0 chr3 74691591 74691630 -143345528 + (TTA)n Simple_repeat Simple_repeat 2 40 0 277 295 63 0 chr3 74691633 74691728 -143345430 - MIR SINE MIR -109 153 53 3247 218 46 14 chr3 74693056 74693856 -143343302 + L1MD2 LINE L1 5513 6338 -21 828 266 39 11 chr3 74693890 74694176 -143342982 - L1MEc LINE L1 -3121 3094 2801 299 202 138 18 chr3 74694172 74694281 -143342877 - L1MEc LINE L1 -4019 2377 2256 * 761 245 83 0 chr3 74694286 74694502 -143342656 + L1MB4 LINE L1 4631 4864 -1282 2520 148 50 26 chr3 74694758 74695219 -143341939 + MER101 LTR ERV1 3 474 0 921 161 63 5 chr3 74696367 74696572 -143340586 - L1MA4 LINE L1 -5 6295 6079 1148 204 28 11 chr3 74696576 74697245 -143339913 + L1MB4 LINE L1 4855 5658 -522 381 78 0 31 chr3 74697245 74697307 -143339851 + L1MB1 LINE L1 6107 6168 0 1148 204 28 11 chr3 74697307 74697610 -143339548 + L1MB4 LINE L1 5658 5954 -226 283 227 16 87 chr3 74699889 74700074 -143337084 + (CCCA)n Simple_repeat Simple_repeat 2 173 0 215 215 15 85 chr3 74700087 74700217 -143336941 + (CCCA)n Simple_repeat Simple_repeat 2 122 0 21 0 0 0 chr3 74700260 74700281 -143336877 + AT_rich Low_complexity Low_complexity 1 21 0 1394 120 0 0 chr3 74700605 74700796 -143336362 - AluSg1 SINE Alu -113 196 6 233 0 62 0 chr3 74701662 74701694 -143335464 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1542 157 41 76 chr3 74703638 74704035 -143333123 - MER67C LTR ERV1 -230 284 1 260 308 51 26 chr3 74705220 74705337 -143331821 + L2 LINE L2 3193 3312 -1 21 0 0 0 chr3 74705337 74705358 -143331800 + AT_rich Low_complexity Low_complexity 1 21 0 2121 103 14 0 chr3 74706539 74706829 -143330329 + AluSp SINE Alu 1 294 -19 222 176 0 0 chr3 74707512 74707563 -143329595 + CT-rich Low_complexity Low_complexity 1 51 0 180 0 0 0 chr3 74707701 74707721 -143329437 + (TC)n Simple_repeat Simple_repeat 1 20 0 10153 220 30 16 chr3 74708185 74711321 -143325837 + L1M1 LINE L1 484 3663 -3185 1308 170 45 4 chr3 74711299 74711564 -143325594 + L1M1 LINE L1 6178 6453 -552 * 503 358 106 3 chr3 74711766 74712087 -143325071 + LTR16A LTR ERVL 13 366 -84 840 314 140 11 chr3 74712600 74712693 -143324465 - L2 LINE L2 -1106 2208 2128 1896 87 0 8 chr3 74712693 74712935 -143324223 + AluSq SINE Alu 1 240 -73 840 314 140 11 chr3 74712935 74713306 -143323852 - L2 LINE L2 -1186 2128 1684 214 262 49 0 chr3 74713297 74713358 -143323800 + L3 LINE CR1 1512 1575 -2 * 1818 141 10 10 chr3 74713784 74714074 -143323084 + AluJo SINE Alu 23 312 0 2098 127 7 0 chr3 74715721 74716028 -143321130 - AluSx SINE Alu -3 309 1 257 261 35 35 chr3 74716058 74716173 -143320985 + LTR67 LTR ERVL 443 557 0 443 400 25 9 chr3 74716406 74716726 -143320432 + L2 LINE L2 2431 2755 -559 198 321 25 12 chr3 74716916 74716997 -143320161 + L2 LINE L2 2969 3050 -222 1597 186 83 28 chr3 74718695 74718873 -143318285 - MSTD LTR MaLR -8 386 219 354 23 0 0 chr3 74718873 74718916 -143318242 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 1597 186 83 28 chr3 74718916 74719101 -143318057 - MSTD LTR MaLR -175 219 1 1916 157 39 41 chr3 74719810 74720174 -143316984 - THE1B LTR MaLR 0 364 2 734 181 0 0 chr3 74720316 74720432 -143316726 + FLAM_C SINE Alu 2 117 -16 26 30 0 0 chr3 74721477 74721510 -143315648 + AT_rich Low_complexity Low_complexity 1 33 0 249 57 0 0 chr3 74723766 74723801 -143313357 + (CA)n Simple_repeat Simple_repeat 2 36 0 2841 199 23 12 chr3 74724161 74724733 -143312425 - LTR69 LTR ERVL -10 578 1 503 290 210 5 chr3 74725264 74725478 -143311680 + MIR SINE MIR 5 262 0 206 239 0 15 chr3 74725531 74725598 -143311560 + (TATATG)n Simple_repeat Simple_repeat 1 66 0 698 99 99 0 chr3 74725837 74725948 -143311210 - L1PB1 LINE L1 0 6151 6030 2818 171 45 9 chr3 74726065 74726598 -143310560 + MER39 LTR ERV1 156 707 0 223 357 36 76 chr3 74727032 74727281 -143309877 + L3 LINE CR1 1316 1554 -23 434 338 53 13 chr3 74727411 74727639 -143309519 + MIR SINE MIR 25 261 -1 2108 129 0 13 chr3 74727682 74727984 -143309174 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr3 74728809 74728830 -143308328 + AT_rich Low_complexity Low_complexity 1 21 0 3531 26 0 0 chr3 74729100 74729518 -143307640 + L1PA4 LINE L1 5738 6155 0 185 196 20 0 chr3 74730090 74730141 -143307017 + CT-rich Low_complexity Low_complexity 2 53 0 293 96 0 39 chr3 74730179 74730231 -143306927 - L1MA9 LINE L1 -38 6274 6225 250 212 0 106 chr3 74730203 74730316 -143306842 + L1MC4 LINE L1 6603 6703 -1339 * 282 271 0 12 chr3 74730358 74730443 -143306715 - L1MC4 LINE L1 -1345 6697 6614 228 246 0 0 chr3 74730490 74730555 -143306603 - L1MC4 LINE L1 -1342 6700 6636 * 2208 176 61 77 chr3 74730546 74730887 -143306271 - L1MA9 LINE L1 -73 6239 5911 7521 31 0 0 chr3 74730887 74732070 -143305088 - L1PA4 LINE L1 0 6155 4980 2208 176 61 77 chr3 74732070 74732337 -143304821 - L1MA9 LINE L1 -401 5911 5641 24 0 0 0 chr3 74732581 74732605 -143304553 + AT_rich Low_complexity Low_complexity 1 24 0 350 331 125 5 chr3 74733285 74733469 -143303689 - MIR SINE MIR -37 225 20 445 260 161 36 chr3 74737591 74737814 -143299344 + MIR SINE MIR 2 252 -10 286 235 20 71 chr3 74738242 74738340 -143298818 - L2 LINE L2 -2 3311 3219 189 0 0 0 chr3 74738633 74738654 -143298504 + (T)n Simple_repeat Simple_repeat 1 21 0 353 314 68 0 chr3 74740137 74740255 -143296903 - L2 LINE L2 0 3313 3188 2016 103 0 58 chr3 74740571 74740883 -143296275 - AluSx SINE Alu -18 294 1 22 35 0 0 chr3 74740948 74740977 -143296181 + AT_rich Low_complexity Low_complexity 1 29 0 244 304 17 35 chr3 74741972 74742087 -143295071 - MARNA DNA Mariner -409 177 65 2725 32 0 0 chr3 74743566 74743877 -143293281 + AluY SINE Alu 1 311 0 481 206 237 8 chr3 74744055 74744186 -143292972 + MER58 DNA MER1_type 1 161 -2259 2153 96 7 17 chr3 74744350 74744651 -143292507 + AluSx SINE Alu 1 298 -14 288 0 0 0 chr3 74744651 74744683 -143292475 + (TA)n Simple_repeat Simple_repeat 2 33 0 233 214 60 71 chr3 74744982 74745066 -143292092 - MIR SINE MIR -70 192 110 628 264 34 39 chr3 74745447 74745625 -143291533 - MIR SINE MIR -79 183 7 626 281 40 13 chr3 74749723 74749947 -143287211 + MLT1K LTR MaLR 359 588 0 2349 110 36 8 chr3 74750071 74750436 -143286722 - THE1C LTR MaLR 0 375 1 246 264 73 64 chr3 74750950 74751074 -143286084 + MIR3 SINE MIR 36 163 -45 353 358 0 30 chr3 74751618 74751783 -143285375 + L3 LINE CR1 1243 1402 -175 266 274 133 58 chr3 74752429 74752670 -143284488 + MLT1L LTR MaLR 357 615 0 933 211 0 0 chr3 74752705 74752880 -143284278 - FAM SINE Alu 0 175 1 27 0 0 0 chr3 74752989 74753016 -143284142 + AT_rich Low_complexity Low_complexity 1 27 0 26 0 0 0 chr3 74753478 74753504 -143283654 + AT_rich Low_complexity Low_complexity 1 26 0 1027 139 0 0 chr3 74753676 74753820 -143283338 + AluSq/x SINE Alu 1 144 -169 21 36 0 0 chr3 74754243 74754271 -143282887 + AT_rich Low_complexity Low_complexity 1 28 0 694 271 27 16 chr3 74758811 74759069 -143278089 - MIR SINE MIR 0 262 2 5118 64 2 0 chr3 74759246 74759890 -143277268 + L1PA8A LINE L1 5394 6038 -93 346 282 111 51 chr3 74762301 74762535 -143274623 - MLT1K LTR MaLR -9 579 332 5285 165 40 4 chr3 74762864 74764279 -143272879 + L1MA8 LINE L1 4820 6288 -3 22 35 0 0 chr3 74765615 74765644 -143271514 + AT_rich Low_complexity Low_complexity 1 29 0 664 227 117 0 chr3 74765946 74766109 -143271049 - MER5A DNA MER1_type -4 185 4 767 290 76 0 chr3 74766118 74766356 -143270802 + LTR16A LTR ERVL 125 380 -70 227 361 25 54 chr3 74766627 74766907 -143270251 + L2 LINE L2 2364 2635 -679 2096 99 3 64 chr3 74767079 74767391 -143269767 + AluSq SINE Alu 2 294 -19 310 310 78 21 chr3 74767706 74767848 -143269310 - MIR3 SINE MIR -4 204 55 324 278 0 40 chr3 74768253 74768379 -143268779 + MER112 DNA MER1_type 138 258 -2 1266 225 40 43 chr3 74768543 74768916 -143268242 - MLT1A2 LTR MaLR -2 372 1 2309 153 23 5 chr3 74769579 74769965 -143267193 + MSTB LTR MaLR 1 393 -33 2405 75 7 3 chr3 74770112 74770420 -143266738 - AluY SINE Alu -2 309 1 1556 166 42 7 chr3 74770673 74770832 -143266326 - AluSx SINE Alu -19 293 118 420 37 0 0 chr3 74770832 74770886 -143266272 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 1556 166 42 7 chr3 74770886 74771009 -143266149 - AluSx SINE Alu -194 118 1 214 268 73 49 chr3 74771255 74771337 -143265821 - L2 LINE L2 -20 3293 3210 2486 160 42 13 chr3 74771485 74771941 -143265217 + MER70A LTR ERVL 4 472 0 183 74 0 0 chr3 74774423 74774434 -143262724 + (CTAAA)n Simple_repeat Simple_repeat 3 13 -16 2480 57 3 0 chr3 74774434 74774734 -143262424 + AluY SINE Alu 1 301 -10 183 74 0 0 chr3 74774734 74774749 -143262409 + (CTAAA)n Simple_repeat Simple_repeat 12 29 0 189 253 21 84 chr3 74775125 74775208 -143261950 - L2 LINE L2 0 3313 3237 220 364 141 0 chr3 74775208 74775392 -143261766 + MIR SINE MIR 4 213 -49 219 36 0 0 chr3 74778093 74778121 -143259037 + (TG)n Simple_repeat Simple_repeat 2 29 0 201 45 45 23 chr3 74778124 74778168 -143258990 + (GA)n Simple_repeat Simple_repeat 2 46 0 912 201 102 31 chr3 74778233 74778487 -143258671 - MER92B LTR ERV1 -66 570 299 867 279 12 12 chr3 74781369 74781627 -143255531 + MER46C DNA MER2_type 79 336 -2 390 319 22 38 chr3 74781632 74781817 -143255341 - MIR SINE MIR -79 183 2 5232 129 37 17 chr3 74782464 74784427 -143252731 + L1PA15 LINE L1 4198 6165 0 590 230 0 24 chr3 74785864 74785990 -143251168 - FLAM_A SINE Alu -10 123 1 342 184 54 189 chr3 74786072 74786257 -143250901 + MLT1K LTR MaLR 366 525 -63 2082 246 63 33 chr3 74786697 74787863 -143249295 + L1ME2 LINE L1 4740 5942 -222 729 246 42 14 chr3 74788226 74788441 -143248717 + L1ME2 LINE L1 5944 6164 0 560 53 13 0 chr3 74788468 74788544 -143248614 + (TTCC)n Simple_repeat Simple_repeat 2 78 0 818 228 25 0 chr3 74788544 74788706 -143248452 - FRAM SINE Alu 0 166 1 632 297 130 17 chr3 74788956 74789303 -143247855 + HAL1 LINE L1 1529 1914 -593 300 323 24 24 chr3 74789983 74790150 -143247008 - HAL1 LINE L1 -314 2193 2027 226 242 48 0 chr3 74790440 74790502 -143246656 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 185 273 171 0 chr3 74790577 74790665 -143246493 + MIR SINE MIR 160 262 0 432 366 0 21 chr3 74790745 74790931 -143246227 + MIR3 SINE MIR 22 203 -5 185 256 0 0 chr3 74791087 74791126 -143246032 - L2 LINE L2 -7 3306 3268 256 246 24 63 chr3 74794328 74794454 -143242704 - MLT1L LTR MaLR -176 439 319 333 308 75 75 chr3 74795082 74795442 -143241716 + MLT1K LTR MaLR 142 501 -87 181 358 11 53 chr3 74795671 74795766 -143241392 + MIR SINE MIR 20 110 -152 1641 146 61 8 chr3 74796077 74796338 -143240820 + AluJo SINE Alu 16 290 -22 446 279 41 84 chr3 74796548 74797010 -143240148 - MER65A LTR ERV1 -1 444 3 330 67 0 0 chr3 74798124 74798169 -143238989 + (CA)n Simple_repeat Simple_repeat 2 46 0 1760 132 90 34 chr3 74800884 74801239 -143235919 + THE1C LTR MaLR 1 375 0 824 189 18 6 chr3 74803473 74803637 -143233521 + FRAM SINE Alu 1 166 0 210 105 0 0 chr3 74803775 74803813 -143233345 + (A)n Simple_repeat Simple_repeat 1 38 0 2513 47 7 0 chr3 74804333 74804632 -143232526 + AluY SINE Alu 2 302 -9 1149 237 11 0 chr3 74804762 74805040 -143232118 + Tigger6 DNA MER2_type 1317 1597 0 250 261 50 34 chr3 74805367 74805486 -143231672 + MLT2E LTR ERVL 506 626 -2 296 382 32 14 chr3 74805777 74805997 -143231161 + ERVL LTR ERVL 353 576 -5188 367 277 0 9 chr3 74806000 74806112 -143231046 - LTR33A LTR ERVL 0 523 413 375 303 112 40 chr3 74807036 74807383 -143229775 - MLT1J LTR MaLR 0 511 140 223 179 30 0 chr3 74808245 74808312 -143228846 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 2093 129 23 9 chr3 74808597 74808947 -143228211 + L1MA4A LINE L1 5944 6298 -5 565 257 20 0 chr3 74809249 74809397 -143227761 + MER103 DNA DNA 10 160 -6 300 243 99 91 chr3 74809431 74809651 -143227507 + MLT1J2 LTR MaLR 42 278 -168 242 263 0 0 chr3 74809691 74809748 -143227410 + MLT1J2 LTR MaLR 357 413 -37 351 0 0 0 chr3 74810306 74810345 -143226813 + (CA)n Simple_repeat Simple_repeat 1 39 0 735 180 96 22 chr3 74810358 74810536 -143226622 - L1MD3 LINE L1 -188 7807 7617 768 192 16 50 chr3 74810536 74810718 -143226440 + MLT2C1 LTR ERVL 1 176 -221 2165 151 17 22 chr3 74810743 74811148 -143226010 - L1MA7 LINE L1 -8 6283 5881 7248 24 10 2 chr3 74814771 74816374 -143220784 - L1PA3 LINE L1 0 6155 4566 1530 10 0 73 chr3 74816373 74816578 -143220580 + L1PA3 LINE L1 4373 4562 -1584 * 26 0 0 0 chr3 74817016 74817042 -143220116 + AT_rich Low_complexity Low_complexity 1 26 0 493 337 135 14 chr3 74819191 74819629 -143217529 + L2 LINE L2 2750 3235 -78 2044 133 0 0 chr3 74820848 74821272 -143215886 - AluSc SINE Alu 0 432 9 2094 88 27 10 chr3 74821774 74822068 -143215090 - AluSp SINE Alu -10 303 5 2339 94 0 0 chr3 74823351 74823649 -143213509 + AluSx SINE Alu 1 298 -14 282 274 96 70 chr3 74825702 74825859 -143211299 - MIR SINE MIR -93 169 9 381 333 198 22 chr3 74827622 74827895 -143209263 - L3 LINE CR1 -24 1553 1233 542 232 36 0 chr3 74827927 74828039 -143209119 - MER2 DNA MER2_type 0 345 230 692 73 10 0 chr3 74829081 74829177 -143207981 - L1PA15 LINE L1 -191 5974 5878 1121 126 32 5 chr3 74829177 74829366 -143207792 + L1PA15 LINE L1 5970 6164 -1 1152 248 20 72 chr3 74829368 74829772 -143207386 - MER34 LTR ERV1 -158 384 2 1690 154 39 26 chr3 74829931 74830236 -143206922 - AluSx SINE Alu -1 311 3 201 237 0 0 chr3 74830989 74831027 -143206131 + (CA)n Simple_repeat Simple_repeat 1 38 0 223 375 117 17 chr3 74831384 74831504 -143205654 - L2 LINE L2 -18 3254 3123 185 175 0 25 chr3 74831907 74831947 -143205211 - MIR SINE MIR -165 97 59 2005 159 43 19 chr3 74832088 74832459 -143204699 - MSTB LTR MaLR -46 380 1 22 35 0 0 chr3 74832736 74832765 -143204393 + AT_rich Low_complexity Low_complexity 1 29 0 386 222 111 20 chr3 74833265 74833418 -143203740 - MER104 DNA Tc2 -7 173 7 5712 109 13 19 chr3 74834106 74835330 -143201828 + L1PA13 LINE L1 4926 6161 -2 26 30 0 0 chr3 74835464 74835497 -143201661 + AT_rich Low_complexity Low_complexity 1 33 0 2455 70 0 0 chr3 74835529 74835829 -143201329 + AluY SINE Alu 3 302 -9 255 170 0 0 chr3 74835901 74835948 -143201210 + (TA)n Simple_repeat Simple_repeat 2 48 0 525 307 62 43 chr3 74837026 74837283 -143199875 + MIR SINE MIR 1 262 0 25 0 0 0 chr3 74837539 74837564 -143199594 + AT_rich Low_complexity Low_complexity 1 25 0 252 262 123 25 chr3 74837593 74837715 -143199443 + L2 LINE L2 3035 3168 -145 448 81 0 0 chr3 74837721 74837783 -143199375 + U2 snRNA snRNA 2 63 -125 24 53 0 0 chr3 74838113 74838151 -143199007 + AT_rich Low_complexity Low_complexity 1 38 0 885 59 25 0 chr3 74838867 74838985 -143198173 + L1PB1 LINE L1 6030 6150 -1 1489 143 34 4 chr3 74839035 74839301 -143197857 + L1MA9 LINE L1 6025 6298 -14 5238 129 5 52 chr3 74839304 74840627 -143196531 + L1PA16 LINE L1 4873 6156 -10 285 298 64 47 chr3 74840874 74841045 -143196113 + MIR SINE MIR 33 206 -56 23 33 0 0 chr3 74841888 74841918 -143195240 + AT_rich Low_complexity Low_complexity 1 30 0 400 224 179 77 chr3 74841996 74842192 -143194966 - MIR SINE MIR -39 223 8 21 36 0 0 chr3 74842604 74842632 -143194526 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr3 74843232 74843269 -143193889 + AT_rich Low_complexity Low_complexity 1 37 0 13489 133 32 9 chr3 74843347 74845749 -143191409 + Tigger1 DNA MER2_type 4 2418 0 272 284 0 0 chr3 74846092 74846166 -143190992 + (TCCA)n Simple_repeat Simple_repeat 3 76 0 1178 157 10 0 chr3 74848397 74848594 -143188564 + Tigger1 DNA MER2_type 1 199 -2219 772 353 78 9 chr3 74849969 74850419 -143186739 + L3 LINE CR1 764 1244 -333 226 216 20 0 chr3 74850438 74850489 -143186669 + L1PBb LINE L1 372 423 -5781 339 326 44 22 chr3 74850534 74850669 -143186489 + L3 LINE CR1 1402 1539 -38 18046 175 108 7 chr3 74850867 74851368 -143185790 - L1M1 LINE L1 -2699 4866 4417 11293 37 6 9 chr3 74851368 74853515 -143183643 + L1PA4 LINE L1 4007 6152 -3 216 0 0 0 chr3 74853524 74853548 -143183610 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 18046 175 108 7 chr3 74853548 74855049 -143182109 - L1M1 LINE L1 -3155 4410 3062 180 0 0 0 chr3 74855049 74855069 -143182089 + (TC)n Simple_repeat Simple_repeat 1 20 0 18046 175 108 7 chr3 74855069 74857433 -143179725 - L1M1 LINE L1 -4503 3062 25 270 356 121 40 chr3 74857447 74857925 -143179233 + L2 LINE L2 2365 2881 -433 400 333 172 25 chr3 74858671 74859200 -143177958 + MLT1L LTR MaLR 2 608 -7 309 327 35 0 chr3 74859427 74859540 -143177618 + L2 LINE L2 3179 3295 -18 22 56 0 0 chr3 74859886 74859922 -143177236 + AT_rich Low_complexity Low_complexity 1 36 0 217 209 0 0 chr3 74860175 74860218 -143176940 - MIR3 SINE MIR -45 163 121 26 88 0 0 chr3 74862257 74862325 -143174833 + AT_rich Low_complexity Low_complexity 1 68 0 337 265 127 13 chr3 74862613 74862770 -143174388 - MIR SINE MIR -46 216 38 25 0 0 0 chr3 74863357 74863382 -143173776 + AT_rich Low_complexity Low_complexity 1 25 0 722 232 152 5 chr3 74864139 74864337 -143172821 - MIR SINE MIR -24 238 12 281 324 108 64 chr3 74864588 74865230 -143171928 - L2 LINE L2 -575 2739 2070 225 269 82 60 chr3 74865343 74865477 -143171681 - MER5A DNA MER1_type -3 186 50 441 308 38 15 chr3 74865504 74865637 -143171521 + MIR SINE MIR 6 141 -121 201 94 0 0 chr3 74866409 74866441 -143170717 + (CA)n Simple_repeat Simple_repeat 2 33 0 1857 171 18 9 chr3 74866595 74866934 -143170224 + MLT1A1 LTR MaLR 24 365 0 259 304 13 0 chr3 74866962 74867041 -143170117 + MIR SINE MIR 183 262 0 32 0 0 0 chr3 74867047 74867079 -143170079 + AT_rich Low_complexity Low_complexity 1 32 0 221 298 0 0 chr3 74867164 74867248 -143169910 + (TA)n Simple_repeat Simple_repeat 1 84 0 295 199 96 51 chr3 74867352 74867508 -143169650 - L1ME LINE L1 -316 5805 5643 1039 138 29 0 chr3 74867817 74867991 -143169167 + L1PA16 LINE L1 5979 6157 -9 5643 105 36 12 chr3 74869923 74870774 -143166384 + MER41A-int LTR ERV1 5075 5946 0 4019 91 5 0 chr3 74870774 74871325 -143165833 + MER41A LTR ERV1 1 554 0 207 326 22 0 chr3 74871537 74871583 -143165575 - L2 LINE L2 -85 3187 3141 421 137 0 14 chr3 74871696 74871769 -143165389 + MER4A LTR ERV1 1 72 -592 1473 125 197 78 chr3 74871774 74872135 -143165023 + MER4A LTR ERV1 261 664 0 2252 119 3 0 chr3 74872534 74872845 -143164313 + AluSx SINE Alu 1 312 0 389 288 74 42 chr3 74873103 74873318 -143163840 - MIR SINE MIR 0 262 41 34 0 0 0 chr3 74874222 74874256 -143162902 + AT_rich Low_complexity Low_complexity 1 34 0 232 196 216 39 chr3 74875450 74875552 -143161606 - MARNA DNA Mariner -316 270 151 683 336 29 0 chr3 74877242 74877483 -143159675 - MIR SINE MIR -14 248 1 203 151 14 55 chr3 74877760 74877833 -143159325 + GA-rich Low_complexity Low_complexity 3 72 0 214 364 57 30 chr3 74877834 74878238 -143158920 - L2 LINE L2 -912 2402 1988 216 0 0 0 chr3 74878700 74878724 -143158434 + (TCTA)n Simple_repeat Simple_repeat 2 25 0 791 165 27 127 chr3 74879681 74879941 -143157217 - MER106A DNA MER1_type 0 236 3 302 279 123 8 chr3 74882368 74882490 -143154668 + L2 LINE L2 3137 3272 0 511 330 112 4 chr3 74882726 74882959 -143154199 + MIR SINE MIR 5 262 0 256 291 12 35 chr3 74883939 74884025 -143153133 - L2 LINE L2 -1 3312 3229 1265 197 28 14 chr3 74885990 74886269 -143150889 + MLT1D LTR MaLR 239 502 -3 4379 208 32 40 chr3 74886271 74887698 -143149460 + L1MD1 LINE L1 4828 6242 0 184 175 0 25 chr3 74887714 74887754 -143149404 + L2 LINE L2 3275 3313 0 222 339 43 75 chr3 74890375 74890487 -143146671 - MIR3 SINE MIR -14 194 89 1811 142 0 42 chr3 74890487 74890796 -143146362 - AluSq SINE Alu -15 298 3 222 339 43 75 chr3 74890796 74890869 -143146289 - MIR3 SINE MIR -119 89 15 22 56 0 0 chr3 74890885 74890921 -143146237 + AT_rich Low_complexity Low_complexity 1 36 0 383 265 41 71 chr3 74891276 74891446 -143145712 + L2 LINE L2 3149 3313 0 1637 173 205 3 chr3 74892236 74892612 -143144546 + LOR1b LTR ERV1 10 461 0 22 0 0 0 chr3 74893202 74893224 -143143934 + AT_rich Low_complexity Low_complexity 1 22 0 185 377 31 23 chr3 74894337 74894467 -143142691 + L2 LINE L2 235 365 -2949 * 669 205 7 33 chr3 74894455 74894606 -143142552 + MER5B DNA MER1_type 29 175 -3 1920 332 152 32 chr3 74894719 74896374 -143140784 + L2 LINE L2 1180 3103 -210 1898 112 0 0 chr3 74896374 74896632 -143140526 - AluSx SINE Alu -19 293 36 1920 332 152 32 chr3 74896632 74896872 -143140286 + L2 LINE L2 3103 3313 0 252 243 0 0 chr3 74897004 74897078 -143140080 + (TA)n Simple_repeat Simple_repeat 1 74 0 25 31 0 0 chr3 74897332 74897364 -143139794 + AT_rich Low_complexity Low_complexity 1 32 0 535 288 5 52 chr3 74897655 74897867 -143139291 - MLT1J LTR MaLR -246 265 64 1931 122 37 10 chr3 74898033 74898329 -143138829 - AluSq SINE Alu -9 304 1 2239 111 32 24 chr3 74900164 74900534 -143136624 + THE1C LTR MaLR 1 373 -2 22 35 0 0 chr3 74900893 74900922 -143136236 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr3 74901255 74901278 -143135880 + AT_rich Low_complexity Low_complexity 1 23 0 267 31 0 0 chr3 74902439 74902471 -143134687 + (TG)n Simple_repeat Simple_repeat 1 32 0 2655 188 38 4 chr3 74902491 74903019 -143134139 + MER44D DNA MER2_type 5 605 0 339 132 0 0 chr3 74903020 74903088 -143134070 + (CA)n Simple_repeat Simple_repeat 2 69 0 4081 87 2 2 chr3 74903204 74903758 -143133400 + MER41A LTR ERV1 1 554 0 296 143 338 13 chr3 74903758 74903835 -143133323 + MER41A-int LTR ERV1 1 102 -5844 3143 156 36 18 chr3 74903844 74904450 -143132708 + MER41A-int LTR ERV1 1 366 -4851 435 38 0 0 chr3 74904450 74904503 -143132655 + (TC)n Simple_repeat Simple_repeat 2 54 0 3143 156 36 18 chr3 74904503 74904968 -143132190 + MER41A-int LTR ERV1 366 821 -4396 6283 138 28 28 chr3 74905001 74905851 -143131307 + PABL_A-int LTR ERV1 3113 3965 -1050 2134 113 3 0 chr3 74905851 74906151 -143131007 - AluSg SINE Alu -9 301 1 6283 138 28 28 chr3 74906151 74906418 -143130740 + PABL_A-int LTR ERV1 3964 4230 -785 255 366 106 0 chr3 74906791 74906914 -143130244 + L2 LINE L2 3122 3257 -15 25 31 0 0 chr3 74906955 74906987 -143130171 + AT_rich Low_complexity Low_complexity 1 32 0 207 0 0 0 chr3 74907040 74907063 -143130095 + (TC)n Simple_repeat Simple_repeat 2 24 0 207 0 0 0 chr3 74907062 74907085 -143130073 + (TG)n Simple_repeat Simple_repeat 2 24 0 383 266 187 54 chr3 74907618 74907821 -143129337 - MIR SINE MIR -29 233 4 2365 70 0 3 chr3 74908169 74908467 -143128691 + AluY SINE Alu 1 297 -14 1072 229 46 86 chr3 74909751 74910206 -143126952 + MER31-int LTR ERV1 3667 4103 -833 1257 208 34 15 chr3 74910250 74910519 -143126639 - AluJo SINE Alu -30 282 9 21 36 0 0 chr3 74910716 74910744 -143126414 + AT_rich Low_complexity Low_complexity 1 28 0 908 259 80 52 chr3 74912633 74913169 -143123989 - HAL1b LINE L1 -240 1108 558 1058 179 94 66 chr3 74913239 74913558 -143123600 - L1MA9 LINE L1 -22 6290 5963 1692 119 0 8 chr3 74914309 74914545 -143122613 + AluSq SINE Alu 1 234 -79 35 24 0 0 chr3 74914728 74914770 -143122388 + AT_rich Low_complexity Low_complexity 1 42 0 254 337 76 0 chr3 74915534 74915626 -143121532 + L2 LINE L2 3195 3293 -20 393 143 43 0 chr3 74916642 74916712 -143120446 - L1MC2 LINE L1 -9 6335 6263 21 0 0 0 chr3 74917045 74917066 -143120092 + AT_rich Low_complexity Low_complexity 1 21 0 29 94 0 0 chr3 74917813 74917898 -143119260 + AT_rich Low_complexity Low_complexity 1 85 0 21 36 0 0 chr3 74917981 74918009 -143119149 + AT_rich Low_complexity Low_complexity 1 28 0 6697 153 194 5 chr3 74918009 74920303 -143116855 - L1MA3 LINE L1 -5 6300 3537 314 163 0 0 chr3 74920934 74920983 -143116175 + Alu SINE Alu 2 50 -253 1993 104 41 0 chr3 74921154 74921462 -143115696 - AluSc SINE Alu 0 319 1 1446 129 78 19 chr3 74921761 74922017 -143115141 + MER7A DNA MER2_type 1 269 -77 249 83 0 0 chr3 74922114 74922150 -143115008 + (CA)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chr3 74922620 74922648 -143114510 + AT_rich Low_complexity Low_complexity 1 28 0 1137 72 0 0 chr3 74922757 74922909 -143114249 - L1PA4 LINE L1 0 6155 6004 278 125 42 0 chr3 74923027 74923075 -143114083 - MER68 LTR ERV1 -512 50 1 343 110 0 24 chr3 74923895 74923977 -143113181 + (TA)n Simple_repeat Simple_repeat 2 81 0 214 295 152 18 chr3 74925029 74925141 -143112017 + MIR SINE MIR 104 230 -32 25 75 0 0 chr3 74925162 74925215 -143111943 + AT_rich Low_complexity Low_complexity 1 53 0 497 331 7 7 chr3 74925373 74925512 -143111646 - L2 LINE L2 0 3272 3134 1520 201 68 12 chr3 74925898 74926236 -143110922 - MLT1A1 LTR MaLR 0 365 9 248 277 36 0 chr3 74926592 74926675 -143110483 + CT-rich Low_complexity Low_complexity 2 87 0 191 373 119 8 chr3 74926867 74927001 -143110157 + MIR3 SINE MIR 20 168 -40 31 0 0 24 chr3 74927003 74927026 -143110132 + AT_rich Low_complexity Low_complexity 1 24 -17 2158 95 20 3 chr3 74927026 74927321 -143109837 - AluSx SINE Alu -12 300 1 31 0 0 24 chr3 74927321 74927339 -143109819 + AT_rich Low_complexity Low_complexity 24 41 0 1604 182 3 0 chr3 74927801 74928087 -143109071 - AluJb SINE Alu 0 312 26 486 172 0 0 chr3 74929102 74929201 -143107957 + GA-rich Low_complexity Low_complexity 4 102 0 663 251 9 81 chr3 74929203 74929414 -143107744 + MLT1A1 LTR MaLR 1 196 -169 440 261 43 50 chr3 74930065 74930226 -143106932 - MER5B DNA MER1_type 0 178 19 197 298 53 0 chr3 74930222 74930279 -143106879 + L2 LINE L2 3195 3254 -18 * 664 223 76 0 chr3 74930949 74931106 -143106052 + MER58A DNA MER1_type 1 169 -55 25 90 0 0 chr3 74931663 74931730 -143105428 + AT_rich Low_complexity Low_complexity 1 67 0 22 0 0 0 chr3 74931873 74931895 -143105263 + AT_rich Low_complexity Low_complexity 1 22 0 372 229 0 86 chr3 74932635 74932753 -143104405 - MIR SINE MIR 0 262 156 775 237 22 27 chr3 74932753 74932977 -143104181 - MER58A DNA MER1_type -1 223 1 372 229 0 86 chr3 74932977 74932998 -143104160 - MIR SINE MIR -106 156 135 457 339 76 45 chr3 74933552 74934099 -143103059 + L2 LINE L2 2753 3313 0 2233 114 0 0 chr3 74934343 74934650 -143102508 + AluSc SINE Alu 1 307 -2 306 311 53 40 chr3 74935825 74935881 -143101277 - MIR SINE MIR -51 211 157 1609 209 141 25 chr3 74935881 74936364 -143100794 - MER34 LTR ERV1 -3 539 1 306 311 53 40 chr3 74936364 74936458 -143100700 - MIR SINE MIR -105 157 59 233 206 32 0 chr3 74936633 74936696 -143100462 + T-rich Low_complexity Low_complexity 1 65 0 631 324 203 14 chr3 74938356 74938795 -143098363 + L3 LINE CR1 1053 1574 -3 207 0 0 0 chr3 74939295 74939318 -143097840 + (A)n Simple_repeat Simple_repeat 1 23 0 398 288 0 14 chr3 74939986 74940013 -143097145 + GA-rich Low_complexity Low_complexity 1 27 -110 213 39 0 0 chr3 74940013 74940039 -143097119 + (ATG)n Simple_repeat Simple_repeat 3 28 0 398 288 0 14 chr3 74940039 74940150 -143097008 + GA-rich Low_complexity Low_complexity 27 137 0 858 133 91 0 chr3 74941103 74941246 -143095912 - FRAM SINE Alu -13 163 8 1114 160 129 98 chr3 74941529 74941658 -143095500 + AluJo SINE Alu 1 124 -178 2043 118 0 10 chr3 74941658 74941954 -143095204 + AluSg SINE Alu 7 299 -11 1114 160 129 98 chr3 74941954 74942111 -143095047 + AluJo SINE Alu 124 296 -6 4592 238 67 37 chr3 74942287 74945111 -143092047 - L1MD1 LINE L1 -8 6628 3719 600 200 49 4 chr3 74945120 74945316 -143091842 - L1MD1 LINE L1 -4402 2138 1894 42 57 0 0 chr3 74947076 74947146 -143090012 + AT_rich Low_complexity Low_complexity 1 70 0 1882 101 0 4 chr3 74947260 74947518 -143089640 - AluSg SINE Alu -15 295 39 201 274 0 32 chr3 74947960 74948022 -143089136 - L2 LINE L2 -289 2983 2924 921 160 6 0 chr3 74948045 74948201 -143088957 + MSTC LTR MaLR 260 416 -12 184 277 90 45 chr3 74948613 74948768 -143088390 + L2 LINE L2 906 1067 -2247 2205 284 147 58 chr3 74948813 74950697 -143086461 + L2 LINE L2 1264 3313 0 1402 164 3 90 chr3 74950735 74951045 -143086113 - AluJo SINE Alu -29 283 1 2201 119 18 44 chr3 74951069 74951454 -143085704 - THE1C LTR MaLR 0 375 1 237 65 0 0 chr3 74952165 74952196 -143084962 + (AGGGGG)n Simple_repeat Simple_repeat 4 34 0 1594 175 14 17 chr3 74952522 74952814 -143084344 - AluJo SINE Alu -21 291 1 214 176 39 20 chr3 74952903 74952954 -143084204 + GA-rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr3 74953809 74953831 -143083327 + AT_rich Low_complexity Low_complexity 1 22 0 312 323 12 12 chr3 74953853 74954017 -143083141 - MER103 DNA DNA -1 165 2 368 286 86 9 chr3 74954358 74954463 -143082695 - L2 LINE L2 0 3272 3160 203 61 30 0 chr3 74954809 74954842 -143082316 + (TA)n Simple_repeat Simple_repeat 1 34 0 180 77 0 0 chr3 74954856 74954882 -143082276 + (TTG)n Simple_repeat Simple_repeat 2 27 0 607 149 16 58 chr3 74954883 74955004 -143082154 - FRAM SINE Alu -41 135 20 253 318 47 0 chr3 74955037 74955144 -143082014 - MIR SINE MIR -59 203 92 180 367 79 50 chr3 74955167 74955407 -143081751 + L2 LINE L2 3026 3272 0 369 0 0 0 chr3 74955817 74955858 -143081300 + (TA)n Simple_repeat Simple_repeat 2 42 0 3494 12 0 0 chr3 74956102 74956502 -143080656 - L1HS LINE L1 0 6155 5756 299 287 96 0 chr3 74956686 74956780 -143080378 + MER3 DNA MER1_type 42 144 -65 3683 44 0 0 chr3 74956790 74957243 -143079915 - L1PA4 LINE L1 0 6155 5703 2554 56 29 3 chr3 74957243 74957584 -143079574 + L1P LINE L1 4392 4741 -1405 945 188 23 61 chr3 74957609 74957870 -143079288 + Charlie5 DNA MER1_type 2234 2484 -128 1650 199 0 3 chr3 74957995 74958296 -143078862 + AluJb SINE Alu 1 300 -12 2104 113 3 41 chr3 74958531 74958850 -143078308 + AluSc SINE Alu 3 309 0 3199 66 18 1 chr3 74958858 74958878 -143078280 + L1P3 LINE L1 5220 5238 -916 3505 96 0 12 chr3 74958878 74959379 -143077779 - L1PA7 LINE L1 0 6154 5660 3199 66 18 1 chr3 74959379 74959807 -143077351 + L1PA7 LINE L1 5238 5674 -480 370 256 45 68 chr3 74960371 74960504 -143076654 - MIR SINE MIR -87 175 46 520 249 83 69 chr3 74960950 74961227 -143075931 + MER102b DNA MER1_type 33 313 -28 196 342 74 27 chr3 74961291 74961440 -143075718 - MIR SINE MIR -29 233 78 204 125 0 0 chr3 74961678 74961710 -143075448 + (GA)n Simple_repeat Simple_repeat 1 32 0 2215 123 3 0 chr3 74963596 74963904 -143073254 - AluSp SINE Alu -4 309 1 1965 129 73 12 chr3 74964025 74964367 -143072791 - Tigger7 DNA MER2_type 0 2587 2225 610 183 17 26 chr3 74964377 74964492 -143072666 - Tigger7 DNA MER2_type -591 114 1 265 250 0 0 chr3 74964579 74964643 -143072515 - L1ME LINE L1 -542 5620 5557 377 294 12 25 chr3 74964736 74964899 -143072259 - Charlie7 DNA MER1_type -1822 790 630 251 236 69 0 chr3 74964966 74965038 -143072120 + L1M4 LINE L1 3789 3865 -2281 985 283 140 25 chr3 74966700 74967100 -143070058 + MLT1G1 LTR MaLR 148 593 -2 2259 159 44 51 chr3 74967211 74967750 -143069408 + MLT2A2 LTR ERVL 1 515 0 457 62 0 15 chr3 74968417 74968482 -143068676 - MADE1 DNA Mariner -16 64 1 222 160 53 11 chr3 74968967 74969061 -143068097 + (TA)n Simple_repeat Simple_repeat 2 99 0 446 256 26 105 chr3 74969226 74969417 -143067741 + MIR SINE MIR 81 256 -6 269 336 106 9 chr3 74970753 74970866 -143066292 + L2 LINE L2 3127 3250 -22 * 390 317 82 25 chr3 74970855 74971098 -143066060 + L2 LINE L2 2655 2911 -403 216 143 0 0 chr3 74971129 74971171 -143065987 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 3362 290 58 33 chr3 74971191 74972700 -143064458 - L2 LINE L2 -29 3284 1737 2318 86 0 3 chr3 74974031 74974332 -143062826 - AluSx SINE Alu -12 300 1 25 31 0 0 chr3 74974540 74974572 -143062586 + AT_rich Low_complexity Low_complexity 1 32 0 23 97 0 0 chr3 74975065 74975137 -143062021 + AT_rich Low_complexity Low_complexity 1 72 0 233 315 109 11 chr3 74975407 74975499 -143061659 + L2 LINE L2 3168 3268 -4 234 325 145 0 chr3 74977111 74977228 -143059930 + MIR3 SINE MIR 71 204 -4 25 51 0 0 chr3 74977606 74977645 -143059513 + AT_rich Low_complexity Low_complexity 1 39 0 1771 162 3 35 chr3 74977736 74978050 -143059108 - AluJb SINE Alu -8 304 1 1349 243 89 23 chr3 74979031 74979467 -143057691 + LTR40c LTR ERVL 1 465 0 445 275 6 56 chr3 74980153 74980256 -143056902 + L1ME LINE L1 5513 5605 -516 1507 168 0 78 chr3 74980256 74980589 -143056569 + AluJo SINE Alu 1 307 -5 445 275 6 56 chr3 74980589 74980663 -143056495 + L1ME LINE L1 5605 5681 -440 180 0 0 0 chr3 74981397 74981417 -143055741 + (TG)n Simple_repeat Simple_repeat 2 21 0 438 101 76 0 chr3 74981873 74981952 -143055206 - L1MA9 LINE L1 -3 6309 6225 32 26 0 0 chr3 74982131 74982170 -143054988 + AT_rich Low_complexity Low_complexity 1 39 0 956 139 14 0 chr3 74982276 74982420 -143054738 - AluSq/x SINE Alu -167 146 1 252 59 0 0 chr3 74982577 74982611 -143054547 + (TTG)n Simple_repeat Simple_repeat 2 35 0 1940 120 0 11 chr3 74982611 74982894 -143054264 - AluSq SINE Alu -33 280 1 1097 245 148 33 chr3 74983192 74983645 -143053513 + MLT1D LTR MaLR 1 505 0 1739 134 4 0 chr3 74983951 74984204 -143052954 + AluSq SINE Alu 3 256 -57 198 91 0 0 chr3 74984208 74984241 -143052917 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 22 35 0 0 chr3 74986308 74986337 -143050821 + AT_rich Low_complexity Low_complexity 1 29 0 2114 102 6 43 chr3 74986400 74986722 -143050436 - AluSg SINE Alu 0 310 1 23 54 0 0 chr3 74988187 74988224 -143048934 + AT_rich Low_complexity Low_complexity 1 37 0 32 0 0 0 chr3 74988869 74988901 -143048257 + AT_rich Low_complexity Low_complexity 1 32 0 27 62 0 0 chr3 74989016 74989064 -143048094 + AT_rich Low_complexity Low_complexity 1 48 0 2196 97 3 7 chr3 74989098 74989406 -143047752 - AluSp SINE Alu -6 307 1 23 68 0 0 chr3 74989414 74989458 -143047700 + AT_rich Low_complexity Low_complexity 1 44 0 201 74 0 0 chr3 74989737 74989764 -143047394 + (A)n Simple_repeat Simple_repeat 1 27 0 3691 134 55 66 chr3 74990175 74990968 -143046190 + LTR1 LTR ERV1 1 785 0 25 0 0 0 chr3 74991131 74991156 -143046002 + AT_rich Low_complexity Low_complexity 1 25 0 29 47 0 0 chr3 74991649 74991692 -143045466 + AT_rich Low_complexity Low_complexity 1 43 0 2501 40 0 10 chr3 74992326 74992627 -143044531 + AluY SINE Alu 1 298 -13 22 0 0 0 chr3 74994111 74994133 -143043025 + AT_rich Low_complexity Low_complexity 1 22 0 5408 113 0 1 chr3 74994182 74994975 -143042183 - L1P LINE L1 -1656 4490 3699 3312 86 17 4 chr3 74994975 74995428 -143041730 + L1PA8A LINE L1 5662 6131 0 21 36 0 0 chr3 74995440 74995468 -143041690 + AT_rich Low_complexity Low_complexity 1 28 0 238 319 78 17 chr3 74995508 74995624 -143041534 + MIR SINE MIR 134 256 -6 282 319 121 0 chr3 74995999 74996115 -143041043 + L2 LINE L2 3183 3312 -1 389 188 16 141 chr3 74996626 74996754 -143040404 - L2 LINE L2 -7 3306 3195 23 0 0 0 chr3 74996768 74996791 -143040367 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr3 74996949 74996981 -143040177 + AT_rich Low_complexity Low_complexity 1 32 0 218 252 27 135 chr3 74997573 74997684 -143039474 - L3 LINE CR1 -320 1257 1159 727 314 100 14 chr3 74998556 74999619 -143037539 + L1ME3 LINE L1 4804 5948 -214 191 218 91 0 chr3 75000382 75000437 -143036721 - L2 LINE L2 0 3313 3254 29 47 0 0 chr3 75001732 75001775 -143035383 + AT_rich Low_complexity Low_complexity 1 43 0 748 197 30 76 chr3 75002029 75002227 -143034931 - MER5A DNA MER1_type 0 189 1 412 206 10 0 chr3 75002955 75003052 -143034106 + Tigger2 DNA MER2_type 244 341 -2377 * 1881 145 7 0 chr3 75003044 75003340 -143033818 + Tigger2 DNA MER2_type 2421 2718 0 30 0 0 0 chr3 75003532 75003562 -143033596 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr3 75003600 75003629 -143033529 + AT_rich Low_complexity Low_complexity 1 29 0 659 24 12 0 chr3 75003718 75003802 -143033356 - L1PA8 LINE L1 -2 6170 6086 1615 202 45 12 chr3 75005087 75005423 -143031735 - MER7A DNA MER2_type 0 346 2 277 272 0 12 chr3 75006128 75006209 -143030949 + L1MC5 LINE L1 7806 7885 -76 1031 180 6 0 chr3 75006494 75006677 -143030481 + MER105 DNA DNA 3 186 -18 2316 68 7 13 chr3 75007286 75007593 -143029565 + AluY SINE Alu 1 305 -6 1405 220 22 25 chr3 75007718 75008081 -143029077 + MLT1A1 LTR MaLR 4 365 0 3983 179 60 48 chr3 75008687 75009255 -143027903 + L1MB8 LINE L1 4823 5383 -795 1868 158 3 0 chr3 75009255 75009569 -143027589 + AluJo SINE Alu 1 312 0 3983 179 60 48 chr3 75009569 75010342 -143026816 + L1MB8 LINE L1 5383 6178 0 186 129 32 0 chr3 75010724 75010755 -143026403 - L2 LINE L2 -525 2789 2758 411 286 65 60 chr3 75011103 75011320 -143025838 - MIR SINE MIR -35 227 10 1556 188 42 17 chr3 75011385 75011741 -143025417 - MLT1A1 LTR MaLR 0 365 1 238 314 67 0 chr3 75012260 75012365 -143024793 + L2 LINE L2 1391 1502 -1812 233 29 29 0 chr3 75012390 75012424 -143024734 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1782 134 0 0 chr3 75012508 75012755 -143024403 - AluSq SINE Alu -65 248 2 300 272 67 90 chr3 75013478 75013549 -143023609 - L1ME4a LINE L1 0 6121 6050 2069 106 7 0 chr3 75013549 75013856 -143023302 + AluSp SINE Alu 1 309 0 300 272 67 90 chr3 75013856 75014095 -143023063 - L1ME4a LINE L1 -71 6050 5817 285 308 175 50 chr3 75014518 75014856 -143022302 - L2 LINE L2 -1869 1445 1066 357 328 46 17 chr3 75015335 75015509 -143021649 + L2 LINE L2 3130 3308 -5 24 32 0 0 chr3 75015901 75015932 -143021226 + AT_rich Low_complexity Low_complexity 1 31 0 1781 165 45 18 chr3 75016795 75017129 -143020029 + MER61A LTR ERV1 1 343 0 203 234 9 54 chr3 75017821 75017932 -143019226 + T-rich Low_complexity Low_complexity 4 109 0 1249 179 48 62 chr3 75018561 75018852 -143018306 + AluJo SINE Alu 1 287 -25 34 0 0 0 chr3 75018852 75018886 -143018272 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr3 75020367 75020392 -143016766 + AT_rich Low_complexity Low_complexity 1 25 0 268 283 142 47 chr3 75020595 75020701 -143016457 + L2 LINE L2 3182 3297 -16 212 256 0 31 chr3 75021228 75021357 -143015801 + GA-rich Low_complexity Low_complexity 3 127 0 300 281 100 22 chr3 75021505 75021721 -143015437 - LTR33 LTR ERVL -256 265 3 430 264 34 23 chr3 75021899 75022132 -143015026 + MER41B LTR ERV1 50 419 -216 2387 165 41 9 chr3 75022268 75022735 -143014423 + L1MB7 LINE L1 5683 6164 -20 2833 139 73 49 chr3 75023946 75024376 -143012782 - MER21A LTR ERV1 -6 925 478 2210 94 0 3 chr3 75024376 75024674 -143012484 - AluY SINE Alu -14 297 1 2833 139 73 49 chr3 75024674 75024775 -143012383 - MER21A LTR ERV1 -453 478 381 1314 178 42 12 chr3 75024755 75025014 -143012144 - MER21A LTR ERV1 -651 280 14 * 319 113 28 0 chr3 75025087 75025158 -143012000 + (TA)n Simple_repeat Simple_repeat 2 74 0 2905 97 32 5 chr3 75026512 75026944 -143010214 - MLT2A1 LTR ERVL 0 444 1 863 277 58 24 chr3 75026968 75027260 -143009898 + MLT1I LTR MaLR 72 373 -36 886 207 125 34 chr3 75027406 75027701 -143009457 - MER5C DNA MER1_type 0 324 3 199 27 27 54 chr3 75028817 75028854 -143008304 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 513 186 51 59 chr3 75028859 75028977 -143008181 - FLAM_C SINE Alu -15 118 2 189 0 0 0 chr3 75029157 75029178 -143007980 + (GA)n Simple_repeat Simple_repeat 1 21 0 * 522 0 0 0 chr3 75029177 75029235 -143007923 + (TG)n Simple_repeat Simple_repeat 2 59 0 591 173 0 31 chr3 75030515 75030642 -143006516 + Charlie5 DNA MER1_type 1 123 -2489 1303 195 68 11 chr3 75030643 75030753 -143006405 + Charlie5 DNA MER1_type 2234 2336 -288 1809 174 26 15 chr3 75030753 75031093 -143006065 - MER2 DNA MER2_type 0 344 1 1303 195 68 11 chr3 75031093 75031352 -143005806 + Charlie5 DNA MER1_type 2336 2624 0 1240 199 15 8 chr3 75031405 75031671 -143005487 - L1ME1 LINE L1 -9 6157 5890 1130 191 0 5 chr3 75033100 75033304 -143003854 - MER58A DNA MER1_type 0 224 22 556 280 102 49 chr3 75033961 75034883 -143002275 + HAL1b LINE L1 12 1065 -283 303 315 158 0 chr3 75034951 75035097 -143002061 + HAL1b LINE L1 1179 1347 -1 24 32 0 0 chr3 75035415 75035446 -143001712 + AT_rich Low_complexity Low_complexity 1 31 0 537 302 79 40 chr3 75035466 75035944 -143001214 + L1MC4a LINE L1 5354 5851 -297 462 318 77 12 chr3 75036060 75036361 -143000797 - MER102b DNA MER1_type -38 303 2 1398 58 0 0 chr3 75037307 75037480 -142999678 - AluY SINE Alu -10 301 129 38 16 0 47 chr3 75037484 75037548 -142999610 + AT_rich Low_complexity Low_complexity 1 61 0 302 341 85 0 chr3 75037596 75037725 -142999433 + MIR SINE MIR 52 191 -71 181 250 36 36 chr3 75038082 75038138 -142999020 - L2 LINE L2 -54 3259 3204 1298 97 5 0 chr3 75038492 75038678 -142998480 - L1PA5 LINE L1 -1212 4934 4748 7312 34 9 0 chr3 75038678 75039901 -142997257 + L1PA5 LINE L1 4939 6170 0 234 252 15 104 chr3 75040257 75040392 -142996766 - L2 LINE L2 -191 3081 2959 339 359 23 8 chr3 75040944 75041075 -142996083 - L2 LINE L2 0 3272 3140 236 324 39 20 chr3 75041202 75041304 -142995854 + L2 LINE L2 3200 3303 -10 181 244 0 0 chr3 75041281 75041322 -142995836 - L2 LINE L2 -5 3308 3268 * 288 324 67 0 chr3 75041412 75041517 -142995641 + MIR SINE MIR 113 224 -38 1259 233 45 45 chr3 75041762 75042136 -142995022 - MLT1A2 LTR MaLR 0 374 1 180 143 0 0 chr3 75042675 75042703 -142994455 - L2 LINE L2 -29 3284 3257 220 253 66 33 chr3 75042766 75042857 -142994301 + MIR SINE MIR 86 179 -83 21 36 0 0 chr3 75043043 75043071 -142994087 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr3 75043100 75043130 -142994028 + AT_rich Low_complexity Low_complexity 1 30 0 313 347 98 17 chr3 75044656 75044829 -142992329 + MIR3 SINE MIR 22 208 0 1926 128 3 3 chr3 75045030 75045354 -142991804 - AluSx SINE Alu 0 324 1 28 0 0 0 chr3 75045392 75045420 -142991738 + AT_rich Low_complexity Low_complexity 1 28 0 833 266 50 17 chr3 75045433 75045674 -142991484 - MIR SINE MIR -1 261 13 2154 95 7 0 chr3 75045694 75046009 -142991149 - AluSp SINE Alu 0 317 1 1956 155 0 0 chr3 75046305 75046589 -142990569 - AluSx SINE Alu -26 286 3 237 65 0 0 chr3 75047329 75047407 -142989751 + (TG)n Simple_repeat Simple_repeat 1 109 0 237 65 0 0 chr3 75047407 75047438 -142989720 + (TG)n Simple_repeat Simple_repeat 2 32 0 4192 25 2 15 chr3 75047771 75048273 -142988885 + L1HS LINE L1 5645 6136 -19 293 0 27 0 chr3 75048273 75048310 -142988848 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 4192 25 2 15 chr3 75048310 75048330 -142988828 + L1HS LINE L1 6136 6155 0 291 390 66 22 chr3 75048681 75048817 -142988341 + L2 LINE L2 3116 3257 -15 432 352 61 5 chr3 75048885 75049081 -142988077 - MIR SINE MIR -3 259 53 288 236 187 5 chr3 75049324 75049527 -142987631 + L1ME4a LINE L1 5835 6074 -47 36 23 0 0 chr3 75049575 75049618 -142987540 + AT_rich Low_complexity Low_complexity 1 43 0 273 183 0 0 chr3 75049971 75050031 -142987127 + (TA)n Simple_repeat Simple_repeat 1 60 0 1139 53 0 0 chr3 75050343 75050475 -142986683 - AluY SINE Alu -179 132 1 22 56 0 0 chr3 75051292 75051328 -142985830 + AT_rich Low_complexity Low_complexity 1 36 0 2804 130 118 6 chr3 75052171 75052917 -142984241 - Tigger3b DNA MER2_type -397 835 1 22 35 0 0 chr3 75053550 75053579 -142983579 + AT_rich Low_complexity Low_complexity 1 29 0 2119 126 3 0 chr3 75053660 75053954 -142983204 - AluSg SINE Alu -15 295 1 446 139 13 0 chr3 75054551 75054630 -142982528 - L1PB4 LINE L1 -7 6149 6070 23 54 0 0 chr3 75055030 75055067 -142982091 + AT_rich Low_complexity Low_complexity 1 37 0 273 311 14 0 chr3 75055704 75055778 -142981380 + GA-rich Low_complexity Low_complexity 4 78 0 234 330 0 33 chr3 75055948 75056039 -142981119 + LTR33 LTR ERVL 10 97 -424 1935 322 80 36 chr3 75056045 75057658 -142979500 + ERVL LTR ERVL 3298 5005 -759 425 279 152 15 chr3 75058186 75058390 -142978768 + LTR33 LTR ERVL 40 271 -250 2035 149 133 16 chr3 75058607 75058990 -142978168 + MSTA LTR MaLR 1 428 0 415 255 69 0 chr3 75059137 75059239 -142977919 + L2 LINE L2 3205 3313 0 1696 243 37 45 chr3 75059572 75060061 -142977097 + L2 LINE L2 2425 2909 -405 3362 117 11 41 chr3 75060061 75060592 -142976566 + MER1A DNA MER1_type 15 529 0 827 305 62 35 chr3 75060597 75060968 -142976190 + L2 LINE L2 2914 3294 -19 298 335 69 13 chr3 75061580 75061881 -142975277 - MERVL LTR ERVL -2713 2772 2505 1357 204 8 4 chr3 75061897 75062137 -142975021 + Tigger7 DNA MER2_type 27 267 -2220 598 140 0 11 chr3 75062135 75062228 -142974930 + Tigger7 DNA MER2_type 2391 2482 -5 * 993 305 125 11 chr3 75062238 75062869 -142974289 - MERVL LTR ERVL -3245 2519 1776 458 330 82 59 chr3 75062919 75063627 -142973531 - MERVL LTR ERVL -4041 1723 1000 248 334 242 7 chr3 75063937 75064239 -142972919 - L2 LINE L2 -544 2770 2398 716 134 0 32 chr3 75064318 75064504 -142972654 + (TA)n Simple_repeat Simple_repeat 1 180 0 26 50 0 0 chr3 75064516 75064556 -142972602 + AT_rich Low_complexity Low_complexity 1 40 0 1166 140 100 8 chr3 75064557 75064807 -142972351 + MER5C DNA MER1_type 1 273 -51 6615 22 0 0 chr3 75064827 75065590 -142971568 - L1PA3 LINE L1 -1 6154 5392 627 259 103 29 chr3 75065768 75065926 -142971232 - MIR SINE MIR -1 261 77 1753 219 3 16 chr3 75065926 75066295 -142970863 - MLT1A1 LTR MaLR -1 364 1 627 259 103 29 chr3 75066295 75066379 -142970779 - MIR SINE MIR -185 77 1 1943 151 3 0 chr3 75067018 75067302 -142969856 + AluJo SINE Alu 1 285 -27 180 0 0 0 chr3 75067508 75067528 -142969630 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 216 0 0 0 chr3 75067841 75067865 -142969293 + (CA)n Simple_repeat Simple_repeat 1 24 0 323 123 77 41 chr3 75068787 75068957 -142968201 + (TA)n Simple_repeat Simple_repeat 2 177 0 1412 181 87 0 chr3 75071212 75071510 -142965648 + MER33 DNA MER1_type 1 324 0 344 203 27 0 chr3 75072497 75072571 -142964587 + MER5A DNA MER1_type 9 84 -105 366 204 88 48 chr3 75072678 75072825 -142964333 + Charlie5 DNA MER1_type 2358 2510 -102 1691 179 14 3 chr3 75073345 75073635 -142963523 - AluJo SINE Alu -19 293 1 25 31 0 0 chr3 75073643 75073675 -142963483 + AT_rich Low_complexity Low_complexity 1 32 0 1188 234 3 19 chr3 75074105 75074473 -142962685 + L1MD2 LINE L1 4935 5296 -850 1803 149 3 27 chr3 75074473 75074627 -142962531 + AluSx SINE Alu 1 146 -166 2707 83 53 16 chr3 75074627 75075059 -142962099 + LTR7 LTR ERV1 1 448 -2 1803 149 3 27 chr3 75075059 75075205 -142961953 + AluSx SINE Alu 146 294 -18 3659 186 69 65 chr3 75075211 75075404 -142961754 + L1MD2 LINE L1 5293 5484 -875 2372 75 0 10 chr3 75075404 75075712 -142961446 + AluY SINE Alu 1 305 -6 3659 186 69 65 chr3 75075712 75075802 -142961356 + L1MD2 LINE L1 5484 5572 -787 2399 84 3 0 chr3 75075802 75076110 -142961048 + AluSc SINE Alu 1 309 0 3659 186 69 65 chr3 75076110 75076867 -142960291 + L1MD2 LINE L1 5572 6338 -21 1188 103 0 0 chr3 75077599 75077773 -142959385 + (TA)n Simple_repeat Simple_repeat 2 175 0 2064 93 47 0 chr3 75077773 75078051 -142959107 - AluSg SINE Alu -18 292 2 376 255 108 57 chr3 75080035 75080192 -142956966 - MIR SINE MIR -44 218 54 6250 153 16 15 chr3 75081028 75082922 -142954236 + L1MA4 LINE L1 4135 6022 -278 327 163 62 0 chr3 75082929 75083009 -142954149 + L1MB3 LINE L1 6091 6175 -8 450 305 39 107 chr3 75083503 75083867 -142953291 - L2 LINE L2 -6 3266 2928 1094 316 88 43 chr3 75084316 75085063 -142952095 - L2 LINE L2 -463 2851 2071 283 210 30 90 chr3 75085238 75085338 -142951820 + MIR SINE MIR 119 212 -50 555 272 69 37 chr3 75085447 75085693 -142951465 + MLT1I LTR MaLR 116 369 -40 2244 116 73 14 chr3 75085916 75086260 -142950898 + THE1B LTR MaLR 1 364 0 379 368 83 6 chr3 75086947 75087298 -142949860 + MARNA DNA Mariner 148 525 -61 205 288 0 55 chr3 75087314 75087387 -142949771 + L2 LINE L2 3245 3313 0 300 290 165 60 chr3 75088325 75088677 -142948481 - L1M2 LINE L1 -5703 1146 758 21 0 0 0 chr3 75089968 75089989 -142947169 + AT_rich Low_complexity Low_complexity 1 21 0 293 313 20 10 chr3 75090016 75090115 -142947043 + L2 LINE L2 2229 2328 -986 313 318 54 14 chr3 75090124 75090272 -142946886 + L2 LINE L2 2522 2675 -639 218 177 65 65 chr3 75090277 75090339 -142946819 + MER5B DNA MER1_type 1 62 -116 * 326 247 72 0 chr3 75090312 75090409 -142946749 - MER5A DNA MER1_type -75 114 11 454 349 67 36 chr3 75090427 75090765 -142946393 + L2 LINE L2 2708 3057 -256 462 308 170 37 chr3 75090922 75091620 -142945538 - L2 LINE L2 -1 3312 2534 2174 197 30 17 chr3 75091656 75092117 -142945041 - MLT1C LTR MaLR 0 467 1 1676 169 45 6 chr3 75092519 75092851 -142944307 + L1MB8 LINE L1 5828 6172 -6 2074 126 0 3 chr3 75093032 75093326 -142943832 - AluSg SINE Alu -17 293 1 388 276 67 0 chr3 75093454 75093559 -142943599 - MLT1L LTR MaLR -153 462 351 5541 104 158 93 chr3 75093572 75095020 -142942138 - pTR5 LTR ERV1 0 2438 741 586 267 163 4 chr3 75095070 75095310 -142941848 - MLT1L LTR MaLR -337 278 1 258 354 49 14 chr3 75095351 75095495 -142941663 + L2 LINE L2 1053 1201 -2113 2822 25 0 0 chr3 75095728 75096045 -142941113 + AluYb8 SINE Alu 2 318 0 1206 119 11 0 chr3 75096059 75096235 -142940923 + AluSg/x SINE Alu 119 296 -14 246 319 58 0 chr3 75096235 75096304 -142940854 + MER91A DNA MER1_type 124 196 0 396 200 0 0 chr3 75096308 75096393 -142940765 + CT-rich Low_complexity Low_complexity 2 86 0 25 0 0 0 chr3 75296954 75296979 -142740179 + AT_rich Low_complexity Low_complexity 1 25 0 22933 120 28 23 chr3 75297019 75297198 -142739960 + HUERS-P3b LTR ERV1 260 437 -6559 195 42 0 0 chr3 75297198 75297222 -142739936 + (CATTT)n Simple_repeat Simple_repeat 3 26 0 22933 120 28 23 chr3 75297222 75300803 -142736355 + HUERS-P3b LTR ERV1 437 4090 -2906 1936 148 0 3 chr3 75300803 75301101 -142736057 - AluSx SINE Alu -15 297 1 22933 120 28 23 chr3 75301101 75301978 -142735180 + HUERS-P3b LTR ERV1 4090 4961 -2035 35962 104 8 7 chr3 75301986 75308120 -142729038 + L1PA6 LINE L1 11 6152 -2 4416 186 60 32 chr3 75308120 75309111 -142728047 + HUERS-P3b LTR ERV1 4814 5831 -1587 38989 83 5 6 chr3 75309111 75315268 -142721890 - L1PA5 LINE L1 0 6154 5 7022 123 14 23 chr3 75315272 75315336 -142721822 + HUERS-P3b LTR ERV1 5808 5871 -1125 1744 160 34 3 chr3 75315336 75315629 -142721529 - AluSc SINE Alu -7 302 1 7022 123 14 23 chr3 75315629 75316764 -142720394 + HUERS-P3b LTR ERV1 5871 6996 0 569 151 0 0 chr3 75316764 75316857 -142720301 + LTR25 LTR ERV1 1 93 -701 980 161 32 0 chr3 75316864 75317019 -142720139 + AluSg/x SINE Alu 134 293 -17 23 54 0 0 chr3 75317883 75317920 -142719238 + AT_rich Low_complexity Low_complexity 1 37 0 507 244 8 0 chr3 75318330 75318453 -142718705 + L1MA7 LINE L1 5709 5832 -459 378 200 27 0 chr3 75318453 75318528 -142718630 + MER5A DNA MER1_type 113 189 0 389 150 5 64 chr3 75318617 75318711 -142718447 + THE1C LTR MaLR 215 292 -83 527 101 0 0 chr3 75318821 75318890 -142718268 + Tigger2 DNA MER2_type 2396 2464 -254 22 35 0 0 chr3 75319996 75320025 -142717133 + AT_rich Low_complexity Low_complexity 1 29 0 1027 225 40 0 chr3 75320633 75320909 -142716249 + L1MA7 LINE L1 6002 6288 -3 38 61 0 0 chr3 75321215 75321281 -142715877 + AT_rich Low_complexity Low_complexity 1 66 0 24 0 0 0 chr3 75321418 75321442 -142715716 + AT_rich Low_complexity Low_complexity 1 24 0 29 47 0 0 chr3 75321974 75322017 -142715141 + AT_rich Low_complexity Low_complexity 1 43 0 3402 225 48 11 chr3 75322885 75323720 -142713438 - L1PA16 LINE L1 -14 6152 5287 * 4088 271 86 23 chr3 75323699 75324178 -142712980 - L1 LINE L1 -873 5273 4826 1511 153 12 8 chr3 75324178 75324420 -142712738 - AluSx SINE Alu -69 243 1 4088 271 86 23 chr3 75324420 75325644 -142711514 - L1 LINE L1 -1320 4826 3439 2029 110 4 0 chr3 75325644 75325971 -142711187 + AluY SINE Alu 1 328 0 4088 271 86 23 chr3 75325971 75326117 -142711041 - L1 LINE L1 -2707 3439 3304 3294 221 56 38 chr3 75326127 75328374 -142708784 + L1MA8 LINE L1 3897 6287 -4 934 70 39 0 chr3 75330067 75330196 -142706962 - AluSc SINE Alu -175 134 1 846 206 21 0 chr3 75330542 75330736 -142706422 + L1MA2 LINE L1 6105 6302 -2 22 35 0 0 chr3 75331044 75331073 -142706085 + AT_rich Low_complexity Low_complexity 1 29 0 1964 153 7 0 chr3 75331124 75331431 -142705727 + AluSx SINE Alu 1 309 -3 1739 168 14 14 chr3 75331696 75331993 -142705165 - AluSx SINE Alu -14 298 2 243 0 0 0 chr3 75331993 75332020 -142705138 + (A)n Simple_repeat Simple_repeat 1 27 0 5255 185 83 22 chr3 75432953 75433715 -142603443 - LTR27-int LTR ERV1 -1928 4018 3139 1707 139 42 3 chr3 75433715 75434003 -142603155 - AluSq SINE Alu -14 299 1 5255 185 83 22 chr3 75434003 75434563 -142602595 - LTR27-int LTR ERV1 -2807 3139 2615 3001 164 35 100 chr3 75434563 75434850 -142602308 - LTR27-int LTR ERV1 -4133 2643 2339 455 129 0 14 chr3 75434850 75434920 -142602238 + AluS SINE Alu 3 71 -247 3001 164 35 100 chr3 75434920 75435712 -142601446 - LTR27-int LTR ERV1 -4437 2339 609 2590 213 104 47 chr3 75435800 75435817 -142601341 - LTR27-int LTR ERV1 -418 4799 4784 1821 145 7 11 chr3 75435817 75436133 -142601025 - AluSg SINE Alu 0 315 1 2590 213 104 47 chr3 75436133 75437322 -142599836 - LTR27-int LTR ERV1 -433 4784 406 490 255 128 34 chr3 75437309 75437544 -142599614 - LTR27-int LTR ERV1 -6833 258 2 * 745 242 187 64 chr3 75437548 75438110 -142599048 - LTR27 LTR ERV1 -3 633 3 288 247 62 0 chr3 75439128 75439209 -142597949 - MLT1F1 LTR MaLR -5 562 477 453 305 23 0 chr3 75439227 75439355 -142597803 - MLT1F1 LTR MaLR -196 371 241 842 241 53 8 chr3 75439546 75439926 -142597232 - L1 LINE L1 -1549 4833 4261 1365 130 10 10 chr3 75439955 75440155 -142597003 - AluY SINE Alu -20 291 92 5868 94 3 43 chr3 75440157 75441017 -142596141 - LTR12 LTR ERV1 0 826 1 234 35 0 0 chr3 75441017 75441046 -142596112 + AluY SINE Alu 66 94 -207 2883 245 80 40 chr3 75441089 75443004 -142594154 - L1 LINE L1 -2205 4177 2188 197 253 71 91 chr3 75443941 75444000 -142593158 + MIR SINE MIR 40 99 -163 2134 99 7 0 chr3 75444000 75444306 -142592852 - AluSp SINE Alu 0 308 1 197 253 71 91 chr3 75444306 75444399 -142592759 + MIR SINE MIR 99 190 -72 2306 112 0 0 chr3 75444623 75444927 -142592231 - AluY SINE Alu -7 304 1 413 333 60 18 chr3 75444956 75445124 -142592034 - MER5B DNA MER1_type -3 175 1 22 56 0 0 chr3 75445389 75445425 -142591733 + AT_rich Low_complexity Low_complexity 1 36 0 1725 158 24 20 chr3 75445817 75446115 -142591043 - AluSq SINE Alu -12 301 3 1719 187 27 0 chr3 75446560 75446859 -142590299 + AluJb SINE Alu 1 307 -5 225 328 115 8 chr3 75446989 75447111 -142590047 + MIR SINE MIR 15 149 -113 445 291 119 19 chr3 75447424 75447743 -142589415 - L1MCa LINE L1 -2396 4030 3680 1838 188 9 18 chr3 75447791 75448132 -142589026 - MER1B DNA MER1_type 0 339 2 4503 221 167 39 chr3 75448140 75448522 -142588636 - L1MCa LINE L1 -2823 3603 3271 1959 133 14 3 chr3 75448522 75448815 -142588343 - AluSg SINE Alu -14 296 1 4503 221 167 39 chr3 75448815 75449920 -142587238 - L1MCa LINE L1 -3155 3271 2309 1264 220 23 40 chr3 75449920 75450224 -142586934 - AluJo SINE Alu -2 300 2 4503 221 167 39 chr3 75450224 75450778 -142586380 - L1MCa LINE L1 -4117 2309 1828 2243 95 24 0 chr3 75450778 75451073 -142586085 - AluSg SINE Alu -8 302 1 4503 221 167 39 chr3 75451073 75451338 -142585820 - L1MCa LINE L1 -4598 1828 1598 1473 190 0 43 chr3 75451338 75451643 -142585515 - AluJb SINE Alu -20 292 1 4503 221 167 39 chr3 75451643 75452212 -142584946 - L1MCa LINE L1 -4828 1598 1103 1976 132 14 0 chr3 75452212 75452501 -142584657 - AluSg1 SINE Alu -16 293 1 4503 221 167 39 chr3 75452501 75452609 -142584549 - L1MCa LINE L1 -5323 1103 234 504 319 34 12 chr3 75452611 75452937 -142584221 - L1 LINE L1 -2682 3464 3132 1222 184 157 0 chr3 75452943 75453236 -142583922 - MER7A DNA MER2_type -5 341 5 910 236 88 41 chr3 75453240 75453494 -142583664 - L1 LINE L1 -3046 3100 2817 2247 86 0 16 chr3 75453494 75453797 -142583361 - AluY SINE Alu -13 298 1 910 236 88 41 chr3 75453797 75453961 -142583197 - L1 LINE L1 -3329 2817 2662 1543 171 38 38 chr3 75453968 75454261 -142582897 + MER1B DNA MER1_type 1 293 -46 490 77 0 13 chr3 75454256 75454334 -142582824 + Tigger7 DNA MER2_type 2317 2393 -98 * 761 257 167 9 chr3 75454331 75454553 -142582605 - MLT1F1 LTR MaLR -184 383 127 302 291 152 13 chr3 75455376 75455534 -142581624 - L1ME1 LINE L1 -49 6117 5938 706 207 0 21 chr3 75455534 75455674 -142581484 - FLAM_C SINE Alu -1 142 6 533 223 41 44 chr3 75455678 75455851 -142581307 - L1ME1 LINE L1 -280 5886 5736 2172 123 0 0 chr3 75456673 75456975 -142580183 - AluY SINE Alu -9 302 1 2080 93 0 24 chr3 75457005 75457294 -142579864 + AluSx SINE Alu 1 282 -30 268 214 0 22 chr3 75459222 75459311 -142577847 + (CATA)n Simple_repeat Simple_repeat 3 89 0 27 0 0 0 chr3 75459420 75459447 -142577711 + AT_rich Low_complexity Low_complexity 1 27 0 264 139 0 0 chr3 75459491 75459534 -142577624 + tRNA-Cys-TGC tRNA tRNA 1 43 -32 1077 157 6 0 chr3 75459748 75459920 -142577238 - AluSg/x SINE Alu -3 309 137 2209 72 7 0 chr3 75460231 75460575 -142576583 - AluY SINE Alu 0 348 3 182 345 84 17 chr3 75460900 75461019 -142576139 - L2 LINE L2 0 3313 3187 1658 179 4 14 chr3 75461185 75461464 -142575694 + AluSx SINE Alu 1 276 -36 269 203 34 0 chr3 75462350 75462409 -142574749 - HsTC2 DNA Tc2 0 1898 1838 23 0 0 0 chr3 75463707 75463730 -142573428 + AT_rich Low_complexity Low_complexity 1 23 0 515 204 106 0 chr3 75463783 75463896 -142573262 + MER82 DNA MER2_type 144 268 -385 258 284 49 0 chr3 75463936 75464017 -142573141 - MER82 DNA MER2_type -555 98 14 198 0 0 0 chr3 75464603 75464625 -142572533 + (CA)n Simple_repeat Simple_repeat 1 22 0 3454 249 48 39 chr3 75464683 75465795 -142571363 - L1M4c LINE L1 -1932 4712 3611 1785 139 48 3 chr3 75465795 75466090 -142571068 - AluSx SINE Alu -4 308 1 3454 249 48 39 chr3 75466090 75466326 -142570832 - L1M4c LINE L1 -3033 3611 3378 1859 127 0 4 chr3 75466326 75466593 -142570565 - AluSx SINE Alu -8 304 39 3454 249 48 39 chr3 75466593 75466819 -142570339 - L1M4c LINE L1 -3266 3378 3124 1431 170 43 0 chr3 75466838 75467091 -142570067 - AluSq SINE Alu -6 307 44 854 254 54 42 chr3 75467091 75467363 -142569795 - L1M4c LINE L1 -3551 3093 2826 1711 133 7 30 chr3 75467363 75467634 -142569524 - AluSx SINE Alu -8 304 40 854 254 54 42 chr3 75467634 75467999 -142569159 - L1M4c LINE L1 -3818 2826 2435 917 191 44 15 chr3 75468002 75468206 -142568952 - Tigger1 DNA MER2_type -2 2416 2207 310 213 27 0 chr3 75468215 75468290 -142568868 - Tigger1 DNA MER2_type -2341 77 1 286 263 51 8 chr3 75468304 75468422 -142568736 - L1M4c LINE L1 -4224 2422 2300 1088 271 171 29 chr3 75468451 75468784 -142568374 - L1M4c LINE L1 -4485 2161 1877 197 65 32 0 chr3 75468784 75468815 -142568343 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1088 271 171 29 chr3 75468815 75469235 -142567923 - L1M4c LINE L1 -4769 1877 1301 1829 162 0 10 chr3 75469235 75469532 -142567626 - AluSc SINE Alu -15 294 1 899 111 21 35 chr3 75469533 75469677 -142567481 - AluSp SINE Alu -171 142 1 247 211 56 106 chr3 75469679 75469797 -142567361 - L1M4c LINE L1 -5345 1301 1192 1901 113 3 28 chr3 75469797 75470103 -142567055 - AluSx SINE Alu 0 305 7 247 211 56 106 chr3 75470103 75470163 -142566995 - L1M4c LINE L1 -5454 1192 1131 1170 140 0 6 chr3 75470225 75470404 -142566754 - AluSg/x SINE Alu -15 295 118 1907 135 18 0 chr3 75470421 75470703 -142566455 - AluSq SINE Alu -26 287 1 244 372 0 18 chr3 75470720 75470833 -142566325 - L1M4c LINE L1 -5117 1458 1348 286 318 40 8 chr3 75471243 75471369 -142565789 - L1M4c LINE L1 -6310 232 103 2265 122 0 0 chr3 75471678 75471981 -142565177 + AluSx SINE Alu 1 303 -9 26 50 0 0 chr3 75472370 75472410 -142564748 + AT_rich Low_complexity Low_complexity 1 40 0 1843 144 4 0 chr3 75473866 75474137 -142563021 - AluSg1 SINE Alu -12 297 26 248 175 223 39 chr3 75474573 75474676 -142562482 + MER5C DNA MER1_type 203 324 0 1912 136 4 0 chr3 75475416 75475730 -142561428 - AluY SINE Alu 0 315 1 24 67 0 0 chr3 75476336 75476381 -142560777 + AT_rich Low_complexity Low_complexity 1 45 0 469 324 50 28 chr3 75477056 75477377 -142559781 + L1ME3A LINE L1 5531 5858 -312 1612 164 53 4 chr3 75477824 75478105 -142559053 + AluSx SINE Alu 3 297 -15 301 241 47 77 chr3 75478643 75478813 -142558345 - L1MC5 LINE L1 -329 7632 7468 1473 117 212 185 chr3 75479034 75479505 -142557653 - LTR12 LTR ERV1 -230 484 1 1474 220 70 58 chr3 75479581 75480008 -142557150 - L1MD1 LINE L1 -4 6632 6195 871 201 40 92 chr3 75480008 75480148 -142557010 - MER46A DNA MER2_type -2495 236 113 2032 98 0 59 chr3 75480148 75480453 -142556705 - AluY SINE Alu -24 287 1 871 201 40 92 chr3 75480453 75480561 -142556597 - MER46A DNA MER2_type -2618 113 1 1474 220 70 58 chr3 75480561 75480687 -142556471 - L1MD1 LINE L1 -441 6195 6072 941 173 29 3 chr3 75480878 75481092 -142556066 - LTR25 LTR ERV1 0 794 341 257 135 0 0 chr3 75481287 75481324 -142555834 - LTR25 LTR ERV1 -470 324 288 7526 180 48 32 chr3 75481393 75483618 -142553540 - LTR12-int LTR ERV1 -2 6994 2537 2388 90 0 0 chr3 75483623 75483923 -142553235 - AluY SINE Alu -11 300 1 6703 203 47 18 chr3 75483924 75484759 -142552399 - LTR12-int LTR ERV1 -2873 4123 3314 1873 147 19 13 chr3 75484759 75485066 -142552092 + AluSx SINE Alu 1 309 -3 6703 203 47 18 chr3 75485066 75486033 -142551125 - LTR12-int LTR ERV1 -3682 3314 1029 328 164 0 0 chr3 75486034 75486089 -142551069 - HUERS-P3 LTR ERV1 -4870 2221 2167 1193 226 96 32 chr3 75486120 75486476 -142550682 - HUERS-P3 LTR ERV1 -5247 1749 1223 2497 241 81 51 chr3 75486477 75487658 -142549500 - L1M4 LINE L1 -1166 4980 3764 1309 261 91 54 chr3 75487740 75487878 -142549280 - L1MD1 LINE L1 -635 6001 5870 2140 104 0 35 chr3 75487878 75488196 -142548962 - AluY SINE Alu 0 311 5 1309 261 91 54 chr3 75488196 75489585 -142547573 - L1MD1 LINE L1 -766 5870 4431 479 266 0 0 chr3 75489590 75489699 -142547459 + FRAM SINE Alu 1 106 -70 918 281 59 10 chr3 75489736 75489875 -142547283 - L1MD1 LINE L1 -2112 4428 4297 1121 202 87 32 chr3 75489875 75490152 -142547006 - AluJb SINE Alu -10 292 1 918 281 59 10 chr3 75490152 75490421 -142546737 - L1MD1 LINE L1 -2243 4297 4000 532 265 96 31 chr3 75490424 75490903 -142546255 - L1MD1 LINE L1 -2605 3935 3426 313 169 24 0 chr3 75491009 75491092 -142546066 + (TA)n Simple_repeat Simple_repeat 1 85 0 219 69 0 0 chr3 75491094 75491123 -142546035 + (TG)n Simple_repeat Simple_repeat 2 30 0 1175 211 10 67 chr3 75491132 75491430 -142545728 - AluJb SINE Alu -31 281 1 827 245 106 22 chr3 75491500 75492039 -142545119 - L1MD1 LINE L1 -3297 3243 2660 2072 122 6 13 chr3 75492040 75492351 -142544807 - AluSp SINE Alu -4 309 1 305 168 11 53 chr3 75492403 75492498 -142544660 - L1MD1 LINE L1 -4031 2509 2419 2100 270 171 40 chr3 75492535 75493553 -142543605 - L1MD1 LINE L1 -5357 1183 33 2337 93 0 0 chr3 75494361 75494672 -142542486 - AluY SINE Alu 0 311 1 29 70 0 0 chr3 75496129 75496186 -142540972 + AT_rich Low_complexity Low_complexity 1 57 0 2205 113 0 3 chr3 75496304 75496597 -142540561 + AluSq SINE Alu 5 296 -17 1582 191 10 13 chr3 75497847 75498145 -142539013 - AluJb SINE Alu -15 297 1 281 254 158 18 chr3 75499507 75499621 -142537537 + MIR SINE MIR 70 199 -63 1930 176 0 0 chr3 75500549 75500856 -142536302 - AluSx SINE Alu -2 310 4 570 220 74 19 chr3 75500995 75501151 -142536007 + L1MC4 LINE L1 6777 7005 -1033 830 222 104 16 chr3 75501226 75501597 -142535561 + L1MC4a LINE L1 7135 7445 -363 312 131 12 155 chr3 75501771 75501855 -142535303 - Tigger2 DNA MER2_type -3 2715 2644 10680 165 70 19 chr3 75501860 75502315 -142534843 - Tigger2 DNA MER2_type -37 2681 2251 1901 170 24 0 chr3 75502315 75502644 -142534514 + MER1B DNA MER1_type 1 337 0 10680 165 70 19 chr3 75502644 75503820 -142533338 - Tigger2 DNA MER2_type -467 2251 1137 2649 157 60 6 chr3 75503820 75504303 -142532855 - LTR22 LTR ERVK 0 509 1 10680 165 70 19 chr3 75504303 75504482 -142532676 - Tigger2 DNA MER2_type -1581 1137 969 342 45 0 0 chr3 75504482 75504526 -142532632 + (TG)n Simple_repeat Simple_repeat 2 45 0 10680 165 70 19 chr3 75504526 75504742 -142532416 - Tigger2 DNA MER2_type -1749 969 766 2021 127 0 27 chr3 75504742 75505041 -142532117 - AluSg SINE Alu -19 291 1 10680 165 70 19 chr3 75505041 75505158 -142532000 - Tigger2 DNA MER2_type -1952 766 424 745 160 28 113 chr3 75505156 75505198 -142531960 - Tigger2 DNA MER2_type -2523 195 151 * 1908 153 14 0 chr3 75505198 75505493 -142531665 - AluSx SINE Alu -13 299 1 745 160 28 113 chr3 75505493 75505663 -142531495 - Tigger2 DNA MER2_type -2567 151 1 452 271 65 23 chr3 75505665 75505879 -142531279 + L1MC4 LINE L1 7815 8037 -5 285 29 0 0 chr3 75506664 75506698 -142530460 + (TG)n Simple_repeat Simple_repeat 2 35 0 1836 121 40 7 chr3 75506698 75506970 -142530188 - AluSc SINE Alu -28 281 1 2148 123 0 7 chr3 75507018 75507310 -142529848 + AluSc SINE Alu 1 290 -19 21 0 0 0 chr3 75507377 75507398 -142529760 + AT_rich Low_complexity Low_complexity 1 21 0 677 194 23 8 chr3 75508116 75508245 -142528913 - AluJb SINE Alu -14 298 168 269 244 200 37 chr3 75509027 75509162 -142527996 - MIR SINE MIR -62 200 44 197 253 21 84 chr3 75509244 75509339 -142527819 + MIR3 SINE MIR 105 193 -15 2356 101 0 0 chr3 75509373 75509681 -142527477 + AluSx SINE Alu 1 308 -4 217 311 0 0 chr3 75510232 75510293 -142526865 + L2 LINE L2 3250 3310 -3 2259 94 3 16 chr3 75511071 75511380 -142525778 + AluY SINE Alu 1 305 -6 21 71 0 0 chr3 75512265 75512307 -142524851 + AT_rich Low_complexity Low_complexity 1 42 0 1205 183 80 31 chr3 75512734 75513023 -142524135 - AluJo SINE Alu -9 303 1 2125 107 10 3 chr3 75513033 75513331 -142523827 - AluSq SINE Alu -13 300 1 23 0 0 0 chr3 75514801 75514824 -142522334 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr3 75514869 75514906 -142522252 + AT_rich Low_complexity Low_complexity 1 37 0 393 246 215 11 chr3 75517097 75517288 -142519870 - HAL1 LINE L1 -459 2048 1819 348 242 86 111 chr3 75517573 75517771 -142519387 - HAL1 LINE L1 -1023 1484 1292 11607 179 39 24 chr3 75517967 75518929 -142518229 - Tigger1 DNA MER2_type -1 2417 1470 1580 198 7 7 chr3 75518929 75519222 -142517936 - AluSx SINE Alu -19 293 1 11607 179 39 24 chr3 75519222 75520634 -142516524 - Tigger1 DNA MER2_type -948 1470 9 207 0 0 0 chr3 75520636 75520659 -142516499 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 464 283 0 20 chr3 75520661 75520813 -142516345 - L1MC4a LINE L1 -1220 6588 6440 724 204 84 22 chr3 75521550 75521776 -142515382 - L1MC4 LINE L1 -32 8010 7771 282 259 89 9 chr3 75521785 75521897 -142515261 - L1MC4 LINE L1 -461 7581 7461 * 2922 244 34 8 chr3 75521894 75522755 -142514403 - L1MB2 LINE L1 -7 6164 5282 21 0 0 0 chr3 75522986 75523007 -142514151 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr3 75523754 75523786 -142513372 + AT_rich Low_complexity Low_complexity 1 32 0 370 254 35 86 chr3 75524379 75524576 -142512582 + L1MC5 LINE L1 7749 7935 -26 274 339 94 41 chr3 75525424 75525601 -142511557 - MIR SINE MIR -2 260 65 2245 107 3 0 chr3 75525601 75525909 -142511249 - AluSx SINE Alu -3 309 1 274 339 94 41 chr3 75525909 75525976 -142511182 - MIR SINE MIR -197 65 3 2003 144 0 13 chr3 75526239 75526545 -142510613 + AluSx SINE Alu 1 302 -10 536 192 65 75 chr3 75526866 75527080 -142510078 - L1ME1 LINE L1 -318 5848 5637 21 36 0 0 chr3 75527212 75527240 -142509918 + AT_rich Low_complexity Low_complexity 1 28 0 864 232 53 50 chr3 75527766 75528085 -142509073 - L1ME2 LINE L1 -227 5937 5618 1474 159 17 58 chr3 75528877 75529172 -142507986 + AluSx SINE Alu 2 284 -28 2467 225 98 56 chr3 75530312 75532380 -142504778 - L1MB4 LINE L1 0 6416 4262 1807 160 160 74 chr3 75532381 75532843 -142504315 - MER41B LTR ERV1 -16 619 118 655 256 35 41 chr3 75532874 75533051 -142504107 - L1MB4 LINE L1 -2115 4267 4091 3349 109 12 79 chr3 75533051 75533170 -142503988 - MER41A LTR ERV1 0 554 429 1842 133 11 4 chr3 75533170 75533448 -142503710 + AluSx SINE Alu 1 280 -32 3349 109 12 79 chr3 75533448 75533922 -142503236 - MER41A LTR ERV1 -125 429 1 655 256 35 41 chr3 75533922 75534060 -142503098 - L1MB4 LINE L1 -2291 4091 3954 4796 128 26 18 chr3 75534062 75534835 -142502323 - MER4E LTR ERV1 0 779 1 428 227 27 7 chr3 75534869 75535019 -142502139 + CT-rich Low_complexity Low_complexity 2 154 0 770 167 346 4 chr3 75535079 75535348 -142501810 - MER46B DNA MER2_type 0 236 1 247 206 137 0 chr3 75535373 75535446 -142501712 - L1MB4 LINE L1 -2544 3838 3756 3788 135 8 27 chr3 75535446 75535755 -142501403 - LTR9 LTR ERV1 0 612 320 1877 128 35 3 chr3 75535755 75536045 -142501113 - AluSg SINE Alu -9 301 3 3788 135 8 27 chr3 75536045 75536359 -142500799 - LTR9 LTR ERV1 -292 320 1 1016 244 176 15 chr3 75536381 75536509 -142500649 + MER21B LTR ERV1 1 107 -756 4967 127 29 12 chr3 75536509 75537276 -142499882 + LTR17 LTR ERV1 1 780 0 1016 244 176 15 chr3 75537276 75537471 -142499687 + MER21B LTR ERV1 107 376 -487 3225 98 25 18 chr3 75537638 75538128 -142499030 + LTR15 LTR ERV1 1 493 0 2125 118 3 28 chr3 75539616 75539937 -142497221 - AluSp SINE Alu 0 313 1 2782 206 71 18 chr3 75541049 75541605 -142495553 - L1MB4 LINE L1 -4179 2205 1680 1855 111 4 4 chr3 75541605 75541866 -142495292 + AluSg SINE Alu 39 299 -11 2782 206 71 18 chr3 75541866 75542261 -142494897 - L1MB4 LINE L1 -4704 1680 1108 1783 231 59 29 chr3 75542264 75542740 -142494418 - L1MB4 LINE L1 -5874 510 21 375 288 63 16 chr3 75542762 75542953 -142494205 - L1M4c LINE L1 -3886 2760 2561 23 33 0 0 chr3 75543026 75543056 -142494102 + AT_rich Low_complexity Low_complexity 1 30 0 30 0 0 0 chr3 75543075 75543105 -142494053 + AT_rich Low_complexity Low_complexity 1 30 0 1178 238 105 79 chr3 75543383 75544243 -142492915 - L1M4c LINE L1 -4589 2057 1164 2178 116 3 0 chr3 75544243 75544553 -142492605 - AluY SINE Alu 0 311 1 1178 238 105 79 chr3 75544553 75544734 -142492424 - L1M4c LINE L1 -5482 1164 989 440 330 25 11 chr3 75544816 75545029 -142492129 - L1M4c LINE L1 -5724 922 613 491 304 55 61 chr3 75545774 75546076 -142491082 - L2 LINE L2 -244 3069 2763 274 163 38 100 chr3 75546078 75546158 -142491000 + MER20 DNA MER1_type 67 141 -78 209 43 85 0 chr3 75546361 75546408 -142490750 + GA-rich Low_complexity Low_complexity 1 51 0 516 316 15 0 chr3 75546408 75546544 -142490614 - MER5A DNA MER1_type -51 138 1 530 261 25 19 chr3 75548179 75548340 -142488818 - MER20 DNA MER1_type 0 219 58 1669 123 41 95 chr3 75548681 75548998 -142488160 - AluSx SINE Alu -12 300 1 2002 122 4 0 chr3 75550714 75550992 -142486166 - AluSq SINE Alu -19 294 16 2822 13 0 0 chr3 75551138 75551449 -142485709 + AluYa5 SINE Alu 1 311 0 2100 123 3 3 chr3 75552108 75552417 -142484741 - AluSg SINE Alu -1 309 1 1702 141 76 0 chr3 75552499 75552762 -142484396 - AluSx SINE Alu -23 289 7 2080 136 3 0 chr3 75553869 75554164 -142482994 + AluSx SINE Alu 1 296 -16 254 364 59 8 chr3 75554679 75554797 -142482361 + L2 LINE L2 3136 3259 -13 21 36 0 0 chr3 75555580 75555608 -142481550 + AT_rich Low_complexity Low_complexity 1 28 0 2187 100 7 0 chr3 75555789 75556079 -142481079 + AluSp SINE Alu 1 292 -21 391 229 48 12 chr3 75556253 75556336 -142480822 + AluJb SINE Alu 89 174 -128 293 167 36 12 chr3 75556563 75556647 -142480511 + (TA)n Simple_repeat Simple_repeat 2 87 0 267 175 95 0 chr3 75556648 75556711 -142480447 - L1MC5 LINE L1 -929 7032 6964 1402 173 90 4 chr3 75556743 75557020 -142480138 + AluJb SINE Alu 1 301 -11 2983 227 39 39 chr3 75557907 75558518 -142478640 - L1MB5 LINE L1 -9 6165 5556 1594 151 0 110 chr3 75558518 75558863 -142478295 - AluSx SINE Alu -5 307 1 2983 227 39 39 chr3 75558863 75559256 -142477902 - L1MB5 LINE L1 -618 5556 5169 2080 134 13 0 chr3 75559256 75559554 -142477604 - AluSx SINE Alu -8 304 3 2983 227 39 39 chr3 75559554 75559604 -142477554 - L1MB5 LINE L1 -1005 5169 5121 322 244 99 52 chr3 75559638 75559748 -142477410 - L1MB3 LINE L1 -8 6175 6072 219 36 0 0 chr3 75559748 75559776 -142477382 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1988 107 18 7 chr3 75559776 75560056 -142477102 - AluSq SINE Alu -30 283 1 322 244 99 52 chr3 75560056 75560116 -142477042 - L1MB3 LINE L1 -110 6073 5996 494 229 57 7 chr3 75560198 75560338 -142476820 - L1MB5 LINE L1 -1963 4183 4037 1211 113 21 5 chr3 75560352 75560546 -142476612 - MER107 DNA MER1_type 0 197 1 371 248 115 0 chr3 75560546 75560703 -142476455 + L1M4 LINE L1 4965 5139 -1007 230 231 31 0 chr3 75561102 75561167 -142475991 + (TA)n Simple_repeat Simple_repeat 1 67 0 572 187 24 147 chr3 75561168 75561419 -142475739 + L1MD2 LINE L1 6116 6335 -24 542 241 94 122 chr3 75561484 75561804 -142475354 + L1MC4a LINE L1 6280 6406 -1402 1728 137 7 35 chr3 75561804 75562120 -142475038 - AluSx SINE Alu 0 314 7 542 241 94 122 chr3 75562120 75562266 -142474892 + L1MC4a LINE L1 6406 6554 -1254 761 274 222 14 chr3 75562361 75562780 -142474378 + L1MD3 LINE L1 6728 7233 -762 2082 125 0 3 chr3 75562780 75563119 -142474039 - AluSq SINE Alu 0 338 1 1894 181 0 9 chr3 75563182 75563497 -142473661 + AluJb SINE Alu 1 312 0 936 309 115 21 chr3 75563659 75564231 -142472927 + L1MC3 LINE L1 39 664 -5732 861 253 167 18 chr3 75564250 75564560 -142472598 + L1MC3 LINE L1 715 1116 -5280 1836 151 10 10 chr3 75564560 75564858 -142472300 + AluSx SINE Alu 1 298 -14 861 253 167 18 chr3 75564858 75565001 -142472157 + L1MC3 LINE L1 1116 1236 -5160 497 271 134 6 chr3 75565117 75565460 -142471698 + L1MC3 LINE L1 3725 4111 -2104 228 275 66 73 chr3 75565460 75565747 -142471411 + L1ME2 LINE L1 5859 6143 -21 589 275 178 43 chr3 75565923 75567085 -142470073 + L1MC3 LINE L1 4599 5472 -743 2432 243 56 9 chr3 75567160 75567913 -142469245 + L1MB3 LINE L1 3664 4451 -1695 606 158 199 18 chr3 75567914 75568085 -142469073 + MSTA LTR MaLR 225 426 -2 2665 216 69 43 chr3 75568085 75568364 -142468794 + L1MB3 LINE L1 5323 5593 -590 1772 152 54 0 chr3 75568364 75568640 -142468518 + AluSx SINE Alu 1 291 -21 2665 216 69 43 chr3 75568640 75569190 -142467968 + L1MB3 LINE L1 5593 6173 -10 311 244 318 40 chr3 75569221 75569397 -142467761 - L3 LINE CR1 -449 1128 904 396 269 66 66 chr3 75569552 75569809 -142467349 + L1ME1 LINE L1 5892 6148 -18 41 21 0 0 chr3 75569819 75569867 -142467291 + AT_rich Low_complexity Low_complexity 1 48 0 1017 123 7 0 chr3 75571140 75571278 -142465880 + AluSc SINE Alu 35 173 -136 1374 228 101 48 chr3 75571288 75571723 -142465435 + MER44D DNA MER2_type 69 581 -24 1684 209 3 0 chr3 75571929 75572231 -142464927 - AluJb SINE Alu -9 303 1 1626 189 0 7 chr3 75572413 75572688 -142464470 + AluSx SINE Alu 1 273 -39 207 0 0 0 chr3 75572833 75572856 -142464302 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 815 213 0 25 chr3 75572856 75573016 -142464142 - FAM SINE Alu -19 156 1 322 303 31 62 chr3 75573330 75573492 -142463666 + MIR SINE MIR 104 260 -2 1893 139 0 34 chr3 75573592 75573886 -142463272 - AluSx SINE Alu -26 286 3 1257 171 38 79 chr3 75573907 75574124 -142463034 + AluJo SINE Alu 1 203 -109 2826 179 33 19 chr3 75574124 75574644 -142462514 - MER1A DNA MER1_type 0 527 1 1257 171 38 79 chr3 75574644 75574741 -142462417 + AluJo SINE Alu 203 302 -10 2024 128 3 13 chr3 75575358 75575662 -142461496 - AluSg SINE Alu -9 301 1 317 279 71 32 chr3 75575907 75576061 -142461097 + MIR SINE MIR 103 262 0 957 202 30 25 chr3 75576338 75576541 -142460617 - MER2 DNA MER2_type -138 207 4 699 198 25 0 chr3 75578296 75578417 -142458741 + FLAM_C SINE Alu 1 124 -9 982 201 32 115 chr3 75578431 75578745 -142458413 + AluJo SINE Alu 7 294 -18 207 0 0 0 chr3 75579730 75579753 -142457405 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 344 331 23 15 chr3 75580337 75580470 -142456688 + MER5B DNA MER1_type 44 177 -1 23 54 0 0 chr3 75580498 75580535 -142456623 + AT_rich Low_complexity Low_complexity 1 37 0 30 45 0 0 chr3 75580968 75581012 -142456146 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr3 75581444 75581465 -142455693 + AT_rich Low_complexity Low_complexity 1 21 0 499 328 23 0 chr3 75581606 75581777 -142455381 - MER46C DNA MER2_type -18 320 146 1990 150 0 3 chr3 75582560 75582873 -142454285 - AluSx SINE Alu 0 312 1 24 0 0 0 chr3 75583131 75583155 -142454003 + AT_rich Low_complexity Low_complexity 1 24 0 23 92 0 0 chr3 75583704 75583769 -142453389 + AT_rich Low_complexity Low_complexity 1 65 0 35840 97 13 20 chr3 75584362 75590545 -142446613 - L1PA6 LINE L1 -1 6153 15 186 118 0 0 chr3 75590948 75590982 -142446176 + (CA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr3 75591221 75591242 -142445916 + AT_rich Low_complexity Low_complexity 1 21 0 1994 135 0 3 chr3 75591286 75591583 -142445575 - AluSc SINE Alu -13 296 1 212 217 0 22 chr3 75591786 75591832 -142445326 - L2 LINE L2 -8 3305 3261 1621 120 124 12 chr3 75592134 75592393 -142444765 - AluSg SINE Alu -22 288 1 709 239 5 54 chr3 75592682 75592866 -142444292 + FRAM SINE Alu 1 174 -2 288 279 59 69 chr3 75592981 75593185 -142443973 + MIR SINE MIR 61 262 0 1967 132 34 0 chr3 75593991 75594286 -142442872 - AluSx SINE Alu -7 305 1 373 279 95 78 chr3 75595100 75595215 -142441943 - MER5A DNA MER1_type -3 186 65 2054 120 21 0 chr3 75595215 75595506 -142441652 - AluSc SINE Alu -12 297 1 373 279 95 78 chr3 75595506 75595569 -142441589 - MER5A DNA MER1_type -124 65 5 1952 152 0 0 chr3 75595603 75595893 -142441265 - AluSg SINE Alu -20 290 1 314 212 152 0 chr3 75597984 75598050 -142439108 + MER82 DNA MER2_type 2 77 -576 1905 275 74 59 chr3 75598129 75599207 -142437951 - MER4C-int LTR ERV1 -1011 3180 2060 1357 174 68 65 chr3 75599524 75599909 -142437249 - L1MA4 LINE L1 -4 6296 5911 1363 226 19 0 chr3 75600776 75601041 -142436117 + AluJb SINE Alu 5 274 -38 666 284 11 21 chr3 75601275 75601465 -142435693 - MER4C-int LTR ERV1 -2616 1575 1388 467 324 55 40 chr3 75601510 75601772 -142435386 - MER4C-int LTR ERV1 -3038 1153 873 761 252 117 33 chr3 75601786 75602116 -142435042 - MER4C-int LTR ERV1 -1368 6752 3493 233 171 0 0 chr3 75602125 75602160 -142434998 - U2 snRNA snRNA -153 35 1 2183 129 6 10 chr3 75602238 75602549 -142434609 - AluSg SINE Alu 0 310 1 663 235 14 75 chr3 75602550 75602763 -142434395 - MER4C-int LTR ERV1 -3774 417 218 1196 247 10 20 chr3 75602797 75603101 -142434057 + AluJb SINE Alu 6 306 -6 24 0 0 0 chr3 75603101 75603125 -142434033 + AT_rich Low_complexity Low_complexity 1 24 0 213 231 325 0 chr3 75603746 75603863 -142433295 + MIR SINE MIR 108 262 0 739 239 19 28 chr3 75604718 75605081 -142432077 - MER4C LTR ERV1 -4 695 149 261 194 101 58 chr3 75605173 75605312 -142431846 - MER4C LTR ERV1 -310 155 11 581 243 82 6 chr3 75605540 75605780 -142431378 + MLT2B1 LTR ERVL 1 250 -164 226 167 74 0 chr3 75605788 75605842 -142431316 - Alu SINE Alu -5 297 240 226 214 0 0 chr3 75605840 75605882 -142431276 + Alu SINE Alu 196 237 -63 1092 197 9 9 chr3 75605885 75606103 -142431055 - AluSx SINE Alu -86 226 9 576 238 98 19 chr3 75606136 75606350 -142430808 + MLT2B1 LTR ERVL 290 520 0 2205 117 10 0 chr3 75606459 75606750 -142430408 + AluSg SINE Alu 1 294 -16 659 90 10 0 chr3 75606787 75606887 -142430271 + (TTCC)n Simple_repeat Simple_repeat 4 104 0 1368 241 65 0 chr3 75606906 75607197 -142429961 - AluJo SINE Alu -2 310 1 560 292 62 31 chr3 75607639 75607865 -142429293 - MIR SINE MIR 0 262 30 864 227 67 77 chr3 75608214 75608589 -142428569 + MLT1A2 LTR MaLR 4 374 0 1738 153 7 47 chr3 75608688 75608989 -142428169 + AluSg SINE Alu 1 289 -21 443 319 7 0 chr3 75609022 75609160 -142427998 - MLT1D LTR MaLR -366 139 1 2006 136 7 13 chr3 75609321 75609623 -142427535 - AluSg SINE Alu -10 300 1 1965 146 0 10 chr3 75609905 75610224 -142426934 + AluSq SINE Alu 1 313 0 390 159 23 0 chr3 75610314 75610402 -142426756 + L1MB4 LINE L1 6091 6180 0 1351 179 162 14 chr3 75610884 75611117 -142426041 - MSTA LTR MaLR -1 427 230 2272 123 0 0 chr3 75611117 75611427 -142425731 + AluSg SINE Alu 1 310 0 1351 179 162 14 chr3 75611427 75611557 -142425601 - MSTA LTR MaLR -198 230 10 537 110 0 0 chr3 75611557 75611648 -142425510 + (TC)n Simple_repeat Simple_repeat 2 92 0 431 62 0 16 chr3 75611648 75611712 -142425446 + (CA)n Simple_repeat Simple_repeat 1 63 0 479 186 101 62 chr3 75611744 75611873 -142425285 + FLAM_C SINE Alu 10 143 0 489 283 38 19 chr3 75611877 75612089 -142425069 + L1ME3A LINE L1 5925 6140 -30 221 265 0 0 chr3 75612333 75612382 -142424776 + GA-rich Low_complexity Low_complexity 3 51 0 398 272 98 29 chr3 75612715 75612888 -142424270 - MER5A DNA MER1_type -1 188 4 3187 181 27 34 chr3 75613570 75613611 -142423547 + L1MB3 LINE L1 5386 5426 -757 1848 155 33 13 chr3 75613611 75613747 -142423411 + AluSq SINE Alu 1 133 -180 1846 145 35 7 chr3 75613747 75614036 -142423122 + AluSc SINE Alu 1 297 -12 1848 155 33 13 chr3 75614036 75614202 -142422956 + AluSq SINE Alu 133 309 -4 3187 181 27 34 chr3 75614202 75614934 -142422224 + L1MB3 LINE L1 5426 6154 -29 7333 54 8 12 chr3 75614970 75616440 -142420718 + SVA Other Other 1 1386 0 593 159 0 44 chr3 75616975 75617088 -142420070 - AluSc SINE Alu -18 291 184 1691 194 78 39 chr3 75617263 75617605 -142419553 + MSTA LTR MaLR 1 328 -100 1941 119 3 32 chr3 75617605 75617890 -142419268 + AluSg SINE Alu 1 277 -33 198 0 0 0 chr3 75617890 75617912 -142419246 + (CA)n Simple_repeat Simple_repeat 1 22 0 1691 194 78 39 chr3 75617912 75617980 -142419178 + MSTA LTR MaLR 327 428 0 579 164 151 13 chr3 75618002 75618076 -142419082 - MER7A DNA MER2_type -2866 172 110 2044 151 3 0 chr3 75618076 75618375 -142418783 + AluSg SINE Alu 2 301 -9 579 164 151 13 chr3 75618375 75618452 -142418706 - MER7A DNA MER2_type -2928 110 2 2406 168 52 26 chr3 75618490 75619066 -142418092 - L1MB3 LINE L1 -264 6155 5565 1761 179 3 0 chr3 75619091 75619376 -142417782 - AluJo SINE Alu -16 296 11 2329 228 47 6 chr3 75619377 75620058 -142417100 - L1MB3 LINE L1 -1027 5355 4647 606 214 66 25 chr3 75620235 75620478 -142416680 - L1MB3 LINE L1 -1733 4649 4397 509 187 0 35 chr3 75620479 75620749 -142416409 - AluJb SINE Alu 0 312 5 21 0 0 0 chr3 75620752 75620773 -142416385 + AT_rich Low_complexity Low_complexity 1 21 0 2532 260 25 28 chr3 75620791 75621056 -142416102 - L1MB3 LINE L1 -2039 4343 4079 2935 178 4 4 chr3 75621056 75621596 -142415562 - L1PA15 LINE L1 -1 6164 5625 2532 260 25 28 chr3 75621596 75622270 -142414888 - L1MB3 LINE L1 -2303 4079 3406 * 4522 195 82 43 chr3 75622257 75623472 -142413686 - L1MB3 LINE L1 -3467 2915 1631 1465 215 0 0 chr3 75623472 75623733 -142413425 - AluJb SINE Alu -47 265 5 4522 195 82 43 chr3 75623733 75624200 -142412958 - L1MB3 LINE L1 -4751 1631 1184 612 212 6 12 chr3 75624720 75624890 -142412268 + CT-rich Low_complexity Low_complexity 4 172 0 1149 246 42 17 chr3 75624897 75625186 -142411972 - AluJo SINE Alu -4 298 3 1956 126 0 18 chr3 75625282 75625560 -142411598 - AluSx SINE Alu -39 273 1 2139 97 7 7 chr3 75626260 75626569 -142410589 - L1PA7 LINE L1 0 6154 5846 1922 52 52 4 chr3 75627007 75627255 -142409903 - AluY SINE Alu -16 295 36 858 301 53 38 chr3 75627358 75627932 -142409226 + L1MCa LINE L1 4 545 -5500 910 190 0 23 chr3 75627935 75628109 -142409049 - AluJo SINE Alu -25 287 118 263 128 0 21 chr3 75628180 75628227 -142408931 - AluY SINE Alu -247 52 7 574 221 48 0 chr3 75628301 75628446 -142408712 + L1MCa LINE L1 736 887 -5158 1500 158 11 54 chr3 75628464 75628742 -142408416 + AluSx SINE Alu 30 295 -17 268 257 14 0 chr3 75628775 75628845 -142408313 - MLT1D LTR MaLR -366 139 69 769 188 7 0 chr3 75628852 75628990 -142408168 + AluSg/x SINE Alu 164 302 -10 633 263 24 14 chr3 75628990 75629199 -142407959 + L1MCa LINE L1 881 1091 -4954 1677 229 36 13 chr3 75629201 75629764 -142407394 + LTR25-int LTR ERV1 1159 1865 -5131 * 20158 228 64 45 chr3 75629759 75631894 -142405264 + LTR25-int LTR ERV1 3264 5358 -3561 1410 62 6 17 chr3 75631894 75632072 -142405086 + AluY SINE Alu 117 292 -19 20158 228 64 45 chr3 75632072 75635312 -142401846 + LTR25-int LTR ERV1 5358 8919 0 321 309 9 9 chr3 75635447 75635557 -142401601 + LTR25 LTR ERV1 248 357 -437 835 180 13 1 chr3 75635734 75635917 -142401241 + MER61E LTR ERV1 341 772 -22 1814 160 0 0 chr3 75635996 75636303 -142400855 + AluSx SINE Alu 23 329 0 1020 216 39 52 chr3 75636316 75636668 -142400490 + L1M4 LINE L1 4698 5046 -1100 1676 199 3 6 chr3 75636668 75636979 -142400179 + AluJb SINE Alu 1 310 -2 1020 216 39 52 chr3 75636979 75637011 -142400147 + L1M4 LINE L1 5046 5077 -1069 27 62 0 0 chr3 75637126 75637174 -142399984 + AT_rich Low_complexity Low_complexity 1 48 0 900 234 22 54 chr3 75637205 75637253 -142399905 - L1MB4 LINE L1 -3 6180 6132 2025 92 6 54 chr3 75637253 75637419 -142399739 - AluSx SINE Alu -13 299 153 2475 58 0 0 chr3 75637419 75637714 -142399444 - AluY SINE Alu -16 295 1 2025 92 6 54 chr3 75637714 75637861 -142399297 - AluSx SINE Alu -159 153 1 900 234 22 54 chr3 75637861 75638090 -142399068 - L1MB4 LINE L1 -51 6132 5911 331 226 151 0 chr3 75638104 75638197 -142398961 - AluJb SINE Alu -195 107 1 407 228 35 9 chr3 75638969 75639083 -142398075 + MER20B DNA MER1_type 39 155 -628 1403 193 32 25 chr3 75639155 75639440 -142397718 + AluJb SINE Alu 1 287 -25 180 0 0 0 chr3 75639443 75639463 -142397695 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 33 25 0 0 chr3 75639695 75639735 -142397423 + AT_rich Low_complexity Low_complexity 1 40 0 227 224 30 0 chr3 75639846 75639913 -142397245 + MER20B DNA MER1_type 684 752 -31 216 0 0 0 chr3 75640212 75640236 -142396922 + (T)n Simple_repeat Simple_repeat 1 24 0 929 194 21 16 chr3 75644621 75644812 -142392346 + AluSg/x SINE Alu 107 298 -12 2369 63 0 13 chr3 75645552 75645853 -142391305 - AluY SINE Alu -14 297 1 2297 79 0 10 chr3 75647781 75648071 -142389087 - AluY SINE Alu -14 297 11 27 29 0 0 chr3 75649368 75649402 -142387756 + AT_rich Low_complexity Low_complexity 1 34 0 1867 170 10 0 chr3 75650057 75650357 -142386801 - AluSx SINE Alu -9 303 1 291 291 107 0 chr3 75650976 75651079 -142386079 + MER58A DNA MER1_type 1 114 0 22 0 0 0 chr3 75653316 75653338 -142383820 + AT_rich Low_complexity Low_complexity 1 22 0 1832 131 69 7 chr3 75654440 75654730 -142382428 - AluSg SINE Alu -2 308 1 3393 164 64 39 chr3 75659217 75659983 -142377175 - LTR1 LTR ERV1 0 785 1 7896 154 65 12 chr3 75659983 75662820 -142374338 - HUERS-P2 LTR ERV1 0 3088 1 3653 169 55 29 chr3 75662820 75663585 -142373573 - LTR1 LTR ERV1 0 785 1 346 182 46 0 chr3 75663620 75663712 -142373446 + L1ME3A LINE L1 5870 5969 -193 218 260 52 13 chr3 75664009 75664086 -142373072 - MIR SINE MIR -89 173 94 301 179 0 0 chr3 75665196 75665252 -142371906 - MER41B LTR ERV1 -579 56 1 497 234 0 36 chr3 75665662 75665773 -142371385 + AluJo SINE Alu 122 228 -84 1594 103 5 0 chr3 75665858 75666071 -142371087 + AluSx SINE Alu 6 219 -93 678 152 0 0 chr3 75666071 75666176 -142370982 + AluSg/x SINE Alu 186 290 -20 22 70 0 0 chr3 75666789 75666832 -142370326 + AT_rich Low_complexity Low_complexity 1 43 0 5728 116 5 5 chr3 75668952 75669501 -142367657 - L1PA12 LINE L1 0 6168 5620 2235 98 0 3 chr3 75669501 75669796 -142367362 - AluSc SINE Alu -15 294 1 5728 116 5 5 chr3 75669796 75670627 -142366531 - L1PA12 LINE L1 -547 5621 4796 30 77 0 0 chr3 75670682 75670747 -142366411 + AT_rich Low_complexity Low_complexity 1 65 0 786 128 5 48 chr3 75672306 75672493 -142364665 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 907 147 0 22 chr3 75672525 75672709 -142364449 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1899 100 7 62 chr3 75672731 75673020 -142364138 - AluSg SINE Alu -37 273 1 22 0 0 0 chr3 75673446 75673468 -142363690 + AT_rich Low_complexity Low_complexity 1 22 0 478 185 76 42 chr3 75673863 75674143 -142363015 + LTR54 LTR ERV1 49 397 -113 328 187 56 93 chr3 75674205 75674268 -142362890 - Tigger2 DNA MER2_type -1 2717 2658 1450 171 84 14 chr3 75674268 75674555 -142362603 - AluSx SINE Alu -5 307 1 328 187 56 93 chr3 75674555 75674598 -142362560 - Tigger2 DNA MER2_type -60 2658 2615 21 36 0 0 chr3 75674598 75674626 -142362532 + AT_rich Low_complexity Low_complexity 1 28 0 1994 116 4 0 chr3 75674626 75674893 -142362265 + AluSq SINE Alu 34 301 -12 2068 148 0 3 chr3 75674915 75675225 -142361933 + AluSx SINE Alu 1 309 -3 1531 235 84 21 chr3 75675389 75675865 -142361293 - L1MD1 LINE L1 -5 6237 5732 1216 191 110 61 chr3 75675892 75676101 -142361057 - L1MDa LINE L1 -4411 2129 1932 1861 172 0 0 chr3 75676101 75676386 -142360772 - AluSx SINE Alu -23 289 5 1216 191 110 61 chr3 75676386 75676532 -142360626 - L1MDa LINE L1 -4608 1932 1744 1875 145 3 11 chr3 75676532 75676839 -142360319 - AluSq SINE Alu 0 308 4 1216 191 110 61 chr3 75676839 75676925 -142360233 - L1MDa LINE L1 -4796 1744 1664 333 244 0 0 chr3 75676966 75677052 -142360106 + (CATATA)n Simple_repeat Simple_repeat 3 88 0 325 200 56 0 chr3 75677052 75677142 -142360016 - L1MDa LINE L1 -4879 1661 1567 337 211 11 21 chr3 75677276 75677371 -142359787 - L1ME3A LINE L1 -8 6162 6069 251 250 111 9 chr3 75677508 75677616 -142359542 - L1MC5 LINE L1 -60 7901 7783 25 0 0 0 chr3 75678028 75678053 -142359105 + AT_rich Low_complexity Low_complexity 1 25 0 1252 280 91 64 chr3 75679610 75679840 -142357318 - L1MDa LINE L1 -5064 1476 1254 2019 119 0 0 chr3 75679840 75680109 -142357049 + AluSx SINE Alu 29 297 -15 1252 280 91 64 chr3 75680109 75680153 -142357005 - L1MDa LINE L1 -5286 1254 1213 2093 157 30 50 chr3 75680153 75680594 -142356564 + MSTB1 LTR MaLR 1 432 0 1252 280 91 64 chr3 75680594 75681443 -142355715 - L1MDa LINE L1 -5327 1213 9 35 41 0 0 chr3 75681902 75681951 -142355207 + AT_rich Low_complexity Low_complexity 1 49 0 181 250 103 0 chr3 75681987 75682055 -142355103 - L2 LINE L2 -1091 2223 2149 1819 177 3 0 chr3 75682083 75682377 -142354781 - AluSx SINE Alu -17 295 1 924 185 37 46 chr3 75682530 75682746 -142354412 - AluJo SINE Alu -12 300 87 360 316 67 14 chr3 75683003 75683360 -142353798 - L1M3c LINE L1 -4605 2432 2057 617 319 93 0 chr3 75683361 75683609 -142353549 - L1M3c LINE L1 -6050 980 710 1664 176 44 0 chr3 75683781 75684054 -142353104 - AluSx SINE Alu -23 289 5 1176 198 17 13 chr3 75684262 75684494 -142352664 + AluJo SINE Alu 72 304 -8 2251 103 3 0 chr3 75684650 75684950 -142352208 - AluSp SINE Alu -12 301 1 1679 173 59 0 chr3 75685257 75685573 -142351585 + AluSx SINE Alu 1 333 0 3264 103 10 25 chr3 75685574 75686086 -142351072 + L1PA8A LINE L1 5628 6131 0 593 200 36 30 chr3 75686482 75686647 -142350511 - L1MA5 LINE L1 -4 6296 6131 1867 171 0 3 chr3 75686647 75686945 -142350213 - AluSq SINE Alu -12 301 5 943 131 7 7 chr3 75686947 75687084 -142350074 - AluSq/x SINE Alu -176 137 1 1160 244 55 6 chr3 75687084 75687429 -142349729 - L1MA5 LINE L1 -157 6143 5782 513 210 30 0 chr3 75687451 75687551 -142349607 - FRAM SINE Alu -34 142 40 276 196 18 0 chr3 75687557 75687613 -142349545 + MER66A LTR ERV1 422 478 0 2854 207 63 30 chr3 75687837 75688562 -142348596 + PRIMA41-int LTR ERV1 342 1090 -5586 604 276 6 29 chr3 75688637 75688807 -142348351 + PRIMA41-int LTR ERV1 2938 3103 -3573 6238 173 24 47 chr3 75688982 75689800 -142347358 + PRIMA41-int LTR ERV1 1349 2129 -4547 1769 142 6 85 chr3 75689800 75690130 -142347028 - AluSx SINE Alu -8 304 1 6238 173 24 47 chr3 75690130 75690621 -142346537 + PRIMA41-int LTR ERV1 2129 2629 -4047 4048 151 34 41 chr3 75690621 75691612 -142345546 - MER11C LTR ERVK 0 1071 1 2344 331 60 46 chr3 75691612 75693626 -142343532 + PRIMA41-int LTR ERV1 2372 4433 -3323 2100 148 98 25 chr3 75693626 75694025 -142343133 - MSTA LTR MaLR 0 428 1 2344 331 60 46 chr3 75694025 75695102 -142342056 + PRIMA41-int LTR ERV1 4433 5493 -2263 1998 147 7 0 chr3 75695123 75695422 -142341736 + AluSx SINE Alu 1 301 -11 1293 107 0 0 chr3 75695422 75695591 -142341567 + AluSg/x SINE Alu 132 300 -10 669 314 19 28 chr3 75695629 75696053 -142341105 + PRIMA41-int LTR ERV1 5552 5971 -1785 669 203 92 0 chr3 75696201 75696354 -142340804 - MSTA LTR MaLR -1 427 261 8579 173 34 6 chr3 75696355 75697959 -142339199 + PRIMA41-int LTR ERV1 4658 6306 -370 2903 47 42 0 chr3 75697975 75698358 -142338800 - LTR13 LTR ERVK 0 1007 609 1276 54 0 0 chr3 75698367 75698533 -142338625 - LTR13 LTR ERVK -841 166 1 * 1648 212 24 33 chr3 75698533 75698950 -142338208 + MER66B LTR ERV1 74 486 0 3124 210 29 8 chr3 75698970 75699769 -142337389 - L1 LINE L1 -922 5926 5111 194 61 0 30 chr3 75699769 75699802 -142337356 + (TTA)n Simple_repeat Simple_repeat 2 33 0 990 265 77 0 chr3 75699809 75700069 -142337089 - AluJb SINE Alu -30 282 3 1667 198 21 28 chr3 75700071 75700500 -142336658 - L1 LINE L1 -1732 5116 4691 3767 271 83 21 chr3 75700622 75702261 -142334897 - L1 LINE L1 -4230 2619 880 32 43 0 0 chr3 75702835 75702881 -142334277 + AT_rich Low_complexity Low_complexity 1 46 0 1344 247 68 61 chr3 75703069 75703656 -142333502 - MER50 LTR ERV1 -130 604 14 1160 115 49 0 chr3 75703659 75703842 -142333316 - MER50-int LTR ERV1 -1 7204 7013 1126 187 262 6 chr3 75703842 75704205 -142332953 - LTR46 LTR ERV1 0 460 5 8908 142 20 19 chr3 75704205 75704910 -142332248 - MER50-int LTR ERV1 -197 7008 6305 1982 143 22 36 chr3 75704910 75705275 -142331883 - THE1B LTR MaLR 0 364 5 8908 142 20 19 chr3 75705275 75705735 -142331423 - MER50-int LTR ERV1 -900 6305 5839 2010 116 3 14 chr3 75705735 75706028 -142331130 + AluY SINE Alu 1 290 -21 8908 142 20 19 chr3 75706028 75706416 -142330742 - MER50-int LTR ERV1 -1366 5839 5453 422 128 0 70 chr3 75706432 75706518 -142330640 - MADE1 DNA Mariner 0 80 1 21 57 0 0 chr3 75706541 75706576 -142330582 + AT_rich Low_complexity Low_complexity 1 35 0 2062 142 3 0 chr3 75706612 75706908 -142330250 - AluSx SINE Alu -15 297 1 22 35 0 0 chr3 75706965 75706994 -142330164 + AT_rich Low_complexity Low_complexity 1 29 0 401 192 20 0 chr3 75707303 75707402 -142329756 + L1MB3 LINE L1 6082 6182 -1 203 152 0 0 chr3 75707893 75707926 -142329232 + A-rich Low_complexity Low_complexity 5 37 0 360 235 6 0 chr3 75707976 75708074 -142329084 - L1MA7 LINE L1 -7 6284 6183 * 1258 153 160 3 chr3 75708068 75708350 -142328808 - L1MA6 LINE L1 -461 5839 5514 4734 105 35 1 chr3 75708352 75709093 -142328065 - L1PA5 LINE L1 0 6154 5389 2037 113 28 3 chr3 75709115 75709399 -142327759 + AluSx SINE Alu 5 295 -17 1161 193 37 30 chr3 75709429 75709699 -142327459 - L1PB4 LINE L1 0 6156 5885 339 233 174 32 chr3 75709754 75709973 -142327185 + L1ME1 LINE L1 5795 6044 -122 189 304 62 36 chr3 75711618 75711730 -142325428 + MIR SINE MIR 123 237 -25 2308 83 20 3 chr3 75712201 75712502 -142324656 + AluY SINE Alu 2 307 -4 1595 271 57 11 chr3 75712789 75713246 -142323912 - MER70B LTR ERVL -9 569 92 371 239 11 0 chr3 75713241 75713329 -142323829 - MER70B LTR ERVL -413 165 77 * 1074 244 67 35 chr3 75714038 75714624 -142322534 + L1MEc LINE L1 2373 2999 -3427 541 195 122 18 chr3 75714637 75714801 -142322357 + L1MA9 LINE L1 6092 6272 -40 4106 209 53 11 chr3 75714815 75716712 -142320446 + L1MA7 LINE L1 4336 6291 0 1734 142 37 71 chr3 75716717 75717126 -142320032 + L1MB1 LINE L1 5769 6163 -5 2184 123 3 0 chr3 75717135 75717437 -142319721 - AluSp SINE Alu -10 303 1 2224 59 0 0 chr3 75717468 75717741 -142319417 + AluY SINE Alu 37 309 -2 33 0 0 0 chr3 75717741 75717774 -142319384 + AT_rich Low_complexity Low_complexity 1 33 0 38 22 0 0 chr3 75717833 75717878 -142319280 + AT_rich Low_complexity Low_complexity 1 45 0 1663 63 10 5 chr3 75718328 75718535 -142318623 + AluY SINE Alu 89 296 -15 247 154 26 77 chr3 75718619 75718736 -142318422 + (TTAA)n Simple_repeat Simple_repeat 4 114 0 250 185 32 85 chr3 75718799 75718988 -142318170 + (TTAA)n Simple_repeat Simple_repeat 2 180 0 28 29 0 0 chr3 75718998 75719033 -142318125 + AT_rich Low_complexity Low_complexity 1 35 0 387 359 56 37 chr3 75719771 75720094 -142317064 - L1PA13 LINE L1 -6457 330 2 1859 264 128 27 chr3 75720101 75721322 -142315836 - L1M2 LINE L1 -3972 3237 1850 496 336 100 59 chr3 75722032 75722745 -142314413 - L1M2 LINE L1 -6313 896 30 40272 51 8 1 chr3 75722780 75728890 -142308268 - L1PA4 LINE L1 -8 6147 1 5670 221 23 15 chr3 75728890 75729610 -142307548 - L1 LINE L1 -786 5542 4829 1924 121 4 7 chr3 75729610 75729882 -142307276 + AluSq SINE Alu 30 300 -13 5670 221 23 15 chr3 75729882 75730738 -142306420 - L1 LINE L1 -1499 4829 3953 3721 111 4 21 chr3 75730740 75731298 -142305860 - LTR14 LTR ERVK 0 548 1 353 214 48 0 chr3 75731321 75731405 -142305753 - HERVKC4 LTR ERVK -25 5237 5150 3753 40 21 2 chr3 75731405 75731881 -142305277 - LTR2B LTR ERV1 0 490 6 30770 109 18 31 chr3 75731881 75736161 -142300997 - HERVKC4 LTR ERVK -108 5154 953 2272 86 3 13 chr3 75736161 75736464 -142300694 - AluY SINE Alu -10 301 2 30770 109 18 31 chr3 75736464 75737405 -142299753 - HERVKC4 LTR ERVK -4309 953 1 3768 104 4 21 chr3 75737405 75737963 -142299195 - LTR14 LTR ERVK 0 548 1 976 196 75 0 chr3 75737970 75738210 -142298948 - L1 LINE L1 -2379 3949 3692 275 153 59 82 chr3 75738257 75738342 -142298816 - L1PA16 LINE L1 -18 6148 6066 1830 167 11 19 chr3 75738346 75738420 -142298738 - L1PA16 LINE L1 -329 5837 5764 1692 199 117 8 chr3 75738420 75738806 -142298352 + MSTA LTR MaLR 1 428 0 1830 167 11 19 chr3 75738806 75739103 -142298055 - L1PA16 LINE L1 -402 5764 5469 3206 235 59 4 chr3 75739103 75740230 -142296928 - L1 LINE L1 -2623 3705 2517 1232 218 10 34 chr3 75740238 75740536 -142296622 - AluJo SINE Alu -21 291 1 2042 137 0 16 chr3 75740543 75740856 -142296302 - AluSx SINE Alu 0 312 5 429 344 5 41 chr3 75740858 75741076 -142296082 - L1 LINE L1 -4634 694 485 38738 69 5 6 chr3 75741112 75747271 -142289887 + L1PA5 LINE L1 2 6154 0 747 335 49 10 chr3 75747563 75747972 -142289186 - L1 LINE L1 -4890 438 14 1918 224 30 45 chr3 75747984 75748561 -142288597 - L1MA9 LINE L1 -420 5892 5325 1313 222 68 4 chr3 75748919 75749185 -142287973 - AluJb SINE Alu -25 287 5 679 150 100 12 chr3 75749199 75749359 -142287799 - L1MA8 LINE L1 -3 6288 6115 3104 198 19 18 chr3 75749441 75750164 -142286994 - L1MA5 LINE L1 -10 6290 5567 2446 207 68 6 chr3 75750177 75750881 -142286277 - L1MA5 LINE L1 -1635 4511 3764 2350 148 111 23 chr3 75750881 75751448 -142285710 + MER4B LTR ERV1 1 779 0 665 266 27 27 chr3 75751497 75751798 -142285360 - L1MA5 LINE L1 -2458 3688 3388 4213 189 22 46 chr3 75751799 75752483 -142284675 - L1PA15 LINE L1 -2 6163 5464 1868 143 25 4 chr3 75752483 75752762 -142284396 - AluSx SINE Alu -22 290 6 4213 189 22 46 chr3 75752762 75752776 -142284382 - L1PA15 LINE L1 -701 5464 5451 1949 152 3 3 chr3 75752776 75753078 -142284080 - AluSx SINE Alu -10 302 1 4213 189 22 46 chr3 75753078 75753957 -142283201 - L1PA15 LINE L1 -714 5451 4622 1862 235 33 29 chr3 75753955 75754538 -142282620 - L1MA9 LINE L1 -1676 4470 3886 * 1332 204 0 0 chr3 75754539 75754770 -142282388 - AluJb SINE Alu -18 294 64 2125 212 50 43 chr3 75754772 75755428 -142281730 - L1MA9 LINE L1 -2245 3901 3241 419 245 27 62 chr3 75755421 75755611 -142281547 - L1PA15 LINE L1 -3128 3018 2835 * 564 207 101 52 chr3 75755619 75755842 -142281316 - MER31-int LTR ERV1 -1347 3589 2893 6435 212 33 50 chr3 75755857 75756867 -142280291 - L1PA16 LINE L1 -9 7595 6569 1533 157 58 41 chr3 75756867 75757161 -142279997 - AluSq SINE Alu -14 299 1 6435 212 33 50 chr3 75757161 75758990 -142278168 - L1PA16 LINE L1 -1035 6569 4809 2477 252 33 48 chr3 75758986 75760139 -142277019 - L1PA16 LINE L1 -4249 3335 2185 * 638 344 26 70 chr3 75760652 75760917 -142276241 - L1PA16 LINE L1 -6170 1404 1129 1895 146 3 3 chr3 75760917 75761204 -142275954 + AluSx SINE Alu 9 295 -17 638 344 26 70 chr3 75761204 75761583 -142275575 - L1PA16 LINE L1 -6445 1129 788 6459 211 123 55 chr3 75761597 75762959 -142274199 - L1M4c LINE L1 -3884 2500 910 2084 136 3 3 chr3 75762959 75763269 -142273889 - AluSq SINE Alu -3 310 1 6459 211 123 55 chr3 75763269 75764230 -142272928 - L1M4c LINE L1 -5474 910 17 8295 73 2 17 chr3 75765655 75765844 -142271314 - L1P LINE L1 -3368 2778 2588 2772 10 0 13 chr3 75765844 75766156 -142271002 - AluYa5 SINE Alu -3 308 1 8295 73 2 17 chr3 75766156 75767119 -142270039 - L1P LINE L1 -3558 2588 1644 7158 59 0 1 chr3 75767119 75768750 -142268408 + L1PA5 LINE L1 4525 6154 0 472 284 108 45 chr3 75768812 75769569 -142267589 + L1MDa LINE L1 1557 2361 -4179 1716 267 59 12 chr3 75769583 75770000 -142267158 + L1MB4 LINE L1 3768 4164 -1982 1265 237 0 42 chr3 75770000 75770308 -142266850 + AluJo SINE Alu 3 297 -5 1716 267 59 12 chr3 75770308 75770356 -142266802 + L1MB4 LINE L1 4164 4208 -1938 330 26 0 0 chr3 75770356 75770395 -142266763 + (CA)n Simple_repeat Simple_repeat 2 40 0 1716 267 59 12 chr3 75770395 75770605 -142266553 + L1MB4 LINE L1 4208 4476 -1670 1842 158 0 3 chr3 75770608 75770927 -142266231 + AluSx SINE Alu 1 318 0 455 276 54 5 chr3 75770956 75771141 -142266017 + L1MB4 LINE L1 4677 4870 -1276 29932 74 11 4 chr3 75771187 75776056 -142261102 + L1PA6 LINE L1 1256 6154 0 929 221 104 71 chr3 75776068 75776192 -142260966 + L1MB4 LINE L1 4937 5055 -1128 2019 136 10 3 chr3 75776192 75776487 -142260671 + AluSg SINE Alu 12 308 -2 929 221 104 71 chr3 75776487 75777066 -142260092 + L1MB4 LINE L1 5055 5651 -532 1898 181 58 34 chr3 75777100 75777525 -142259633 - MSTB1 LTR MaLR -5 427 1 1613 203 36 49 chr3 75777525 75777994 -142259164 + L1MB4 LINE L1 5678 6140 -40 1655 248 36 32 chr3 75778041 75778508 -142258650 + L1MCa LINE L1 19 487 -5939 927 297 104 15 chr3 75778517 75778844 -142258314 + L1PB4 LINE L1 10 365 -6484 9983 227 45 25 chr3 75779642 75782548 -142254610 + L1PB4 LINE L1 2267 5307 -1551 2367 41 0 24 chr3 75782548 75782838 -142254320 + AluY SINE Alu 20 302 -9 9983 227 45 25 chr3 75782838 75784421 -142252737 + L1PB4 LINE L1 5307 6858 0 2827 200 90 103 chr3 75784440 75785086 -142252072 + L1MCa LINE L1 505 1158 -5268 1019 159 15 5 chr3 75785086 75785281 -142251877 + L1MA3 LINE L1 6098 6294 -11 2827 200 90 103 chr3 75785281 75785961 -142251197 + L1MCa LINE L1 1158 1910 -4516 198 0 0 0 chr3 75786249 75786271 -142250887 + (A)n Simple_repeat Simple_repeat 1 22 0 297 171 37 49 chr3 75786450 75786532 -142250626 + L1MCa LINE L1 1813 1893 -4533 1600 290 69 16 chr3 75786564 75786630 -142250528 + ERVL LTR ERVL 753 814 -4950 1781 185 66 43 chr3 75786630 75787052 -142250106 + MSTB1 LTR MaLR 1 432 0 1600 290 69 16 chr3 75787052 75787537 -142249621 + ERVL LTR ERVL 814 1333 -4431 2901 209 35 66 chr3 75787537 75788257 -142248901 + L1MB3 LINE L1 5336 6026 -157 2521 47 0 3 chr3 75788257 75788554 -142248604 - AluY SINE Alu -15 296 1 2901 209 35 66 chr3 75788554 75788708 -142248450 + L1MB3 LINE L1 6026 6183 0 6601 231 50 46 chr3 75788731 75789565 -142247593 + ERVL LTR ERVL 1331 2160 -3604 216 0 0 0 chr3 75789565 75789589 -142247569 + (TA)n Simple_repeat Simple_repeat 2 25 0 6601 231 50 46 chr3 75789589 75790584 -142246574 + ERVL LTR ERVL 2160 3167 -2597 6624 236 35 14 chr3 75790595 75792112 -142245046 + ERVL LTR ERVL 3374 4921 -843 859 305 51 83 chr3 75792115 75792717 -142244441 + L1M3a LINE L1 11 789 -5166 18807 156 18 15 chr3 75792722 75793919 -142243239 - L1PA11 LINE L1 0 6174 4982 1815 128 15 7 chr3 75793919 75794193 -142242965 + AluSq SINE Alu 3 278 -35 441 81 0 0 chr3 75794197 75794259 -142242899 + (CA)n Simple_repeat Simple_repeat 1 62 0 18807 156 18 15 chr3 75794259 75796173 -142240985 - L1PA11 LINE L1 -1194 4980 3036 2267 116 3 0 chr3 75796173 75796484 -142240674 - AluSq SINE Alu -1 312 1 18807 156 18 15 chr3 75796484 75797797 -142239361 - L1PA11 LINE L1 -3138 3036 1729 3070 200 53 51 chr3 75797806 75798484 -142238674 + L1PB4 LINE L1 5149 5833 -323 1685 164 15 0 chr3 75798484 75798752 -142238406 + AluSq SINE Alu 25 296 -17 3070 200 53 51 chr3 75798752 75799044 -142238114 + L1PB4 LINE L1 5833 6123 -33 365 271 136 0 chr3 75799130 75799248 -142237910 + L1M3a LINE L1 2429 2562 -3472 4656 245 93 13 chr3 75799252 75800966 -142236192 + L1M3a LINE L1 2514 4365 -1669 1485 148 129 11 chr3 75800988 75801252 -142235906 + AluSg1 SINE Alu 1 295 -14 6562 202 40 16 chr3 75801263 75803688 -142233470 + L1PB1 LINE L1 3514 5977 -174 1972 145 0 3 chr3 75803696 75803992 -142233166 + AluSx SINE Alu 13 307 -5 267 240 10 100 chr3 75804002 75804102 -142233056 - MLT1C LTR MaLR -314 153 63 3262 72 7 2 chr3 75804102 75804558 -142232600 + LTR19A-int LTR ERV1 3002 3459 -2127 26 0 0 0 chr3 75804557 75804583 -142232575 + AT_rich Low_complexity Low_complexity 1 26 0 * 2311 91 0 0 chr3 75804662 75804958 -142232200 + AluY SINE Alu 1 296 -15 738 94 39 8 chr3 75805062 75805190 -142231968 + LTR19A-int LTR ERV1 3364 3495 -2091 1963 86 17 7 chr3 75805249 75805541 -142231617 + LTR19A-int LTR ERV1 4087 4381 -1205 * 3172 103 7 0 chr3 75805536 75805994 -142231164 + LTR19A-int LTR ERV1 5126 5586 0 3245 110 4 0 chr3 75805994 75806476 -142230682 + LTR19A LTR ERV1 1 484 -2 2186 106 0 27 chr3 75806484 75806785 -142230373 + AluY SINE Alu 1 293 -18 555 270 70 90 chr3 75806944 75807571 -142229587 - L1MC4a LINE L1 -1826 5965 2400 309 200 75 0 chr3 75807610 75807690 -142229468 - L2 LINE L2 -8 3305 3220 1885 139 58 10 chr3 75807697 75807992 -142229166 + AluSc SINE Alu 1 309 0 34089 94 7 27 chr3 75808504 75814780 -142222378 + L1PA6 LINE L1 11 6154 0 2059 145 3 0 chr3 75815004 75815301 -142221857 - AluSq SINE Alu -15 298 1 2984 195 86 29 chr3 75815312 75816454 -142220704 - L1MB4 LINE L1 0 6180 4982 388 274 84 60 chr3 75816893 75817108 -142220050 - L1MC4a LINE L1 -4886 1233 1014 261 125 16 16 chr3 75817110 75817174 -142219984 - L1MD3 LINE L1 0 7995 7932 32 43 0 0 chr3 75817421 75817467 -142219691 + AT_rich Low_complexity Low_complexity 1 46 0 2260 270 55 116 chr3 75818011 75818247 -142218911 + L1M2 LINE L1 14 263 -6586 1780 84 84 22 chr3 75818247 75818387 -142218771 - AluSq SINE Alu -16 297 167 1998 76 6 89 chr3 75818387 75818703 -142218455 - AluY SINE Alu -16 295 6 1780 84 84 22 chr3 75818703 75818835 -142218323 - AluSq SINE Alu -146 167 8 2260 270 55 116 chr3 75818835 75820385 -142216773 + L1M2 LINE L1 263 1690 -5159 455 212 35 0 chr3 75820387 75820472 -142216686 + AluJ/FLAM SINE Alu 3 90 -222 234 289 0 0 chr3 75820472 75820548 -142216610 + L1M2 LINE L1 2968 3043 -3805 2026 146 0 81 chr3 75821217 75821627 -142215531 - MER51B LTR ERV1 0 377 1 10290 140 61 23 chr3 75821628 75823451 -142213707 - MER51B-int LTR ERV1 0 7816 5725 1876 164 0 17 chr3 75823451 75823749 -142213409 + AluSx SINE Alu 1 293 -19 10290 140 61 23 chr3 75823749 75824235 -142212923 - MER51B-int LTR ERV1 -2091 5725 5259 1187 127 11 2 chr3 75824236 75824520 -142212638 - MER51B-int LTR ERV1 -2533 5004 4655 * 1332 181 36 4 chr3 75824512 75824789 -142212369 - MER51B-int LTR ERV1 -3221 1996 1711 13048 126 49 23 chr3 75824792 75824915 -142212243 - MER51B-int LTR ERV1 -4000 3816 3698 2177 141 52 74 chr3 75824915 75825412 -142211746 + LTR19A LTR ERV1 1 486 0 13048 126 49 23 chr3 75825412 75826535 -142210623 - MER51B-int LTR ERV1 -4118 3698 2606 1793 188 0 0 chr3 75826535 75826828 -142210330 + AluSx SINE Alu 1 293 -19 13048 126 49 23 chr3 75826828 75827288 -142209870 - MER51B-int LTR ERV1 -5210 2606 2160 2267 117 7 0 chr3 75827288 75827595 -142209563 - AluSq SINE Alu -4 309 1 13048 126 49 23 chr3 75827595 75828451 -142208707 - MER51B-int LTR ERV1 -5656 2160 1184 2643 138 20 37 chr3 75828457 75828818 -142208340 + LTR10B LTR ERV1 7 358 -147 324 0 0 0 chr3 75828818 75828854 -142208304 + (CAA)n Simple_repeat Simple_repeat 2 37 0 2643 138 20 37 chr3 75828854 75829000 -142208158 + LTR10B LTR ERV1 358 505 0 3538 173 12 59 chr3 75829000 75829543 -142207615 - MER51B-int LTR ERV1 -6628 1188 694 2452 193 26 93 chr3 75829543 75830283 -142206875 - LTR8 LTR ERV1 -1 690 1 3538 173 12 59 chr3 75830283 75830549 -142206609 - MER51B-int LTR ERV1 -7122 694 417 795 132 58 46 chr3 75830562 75830736 -142206422 - MER51B-int LTR ERV1 -7640 176 1 2103 132 12 93 chr3 75830736 75830855 -142206303 - MER51B LTR ERV1 0 377 250 2104 138 0 3 chr3 75830855 75831153 -142206005 + AluSq SINE Alu 1 297 -16 2103 132 12 93 chr3 75831153 75831443 -142205715 - MER51B LTR ERV1 -127 250 1 1856 169 0 19 chr3 75832967 75833281 -142203877 - AluSx SINE Alu -4 308 1 2102 92 9 51 chr3 75833509 75833825 -142203333 + AluSg SINE Alu 1 303 -7 2301 117 119 5 chr3 75834013 75834415 -142202743 + LTR7 LTR ERV1 1 448 -2 26 0 0 0 chr3 75834477 75834503 -142202655 + AT_rich Low_complexity Low_complexity 1 26 0 793 217 14 14 chr3 75834644 75834865 -142202293 + L1PB4 LINE L1 2375 2595 -3551 620 131 0 10 chr3 75834865 75834964 -142202194 + MER4A LTR ERV1 1 98 -566 1387 152 64 17 chr3 75834964 75835294 -142201864 + MER4A LTR ERV1 261 664 0 317 259 12 0 chr3 75835294 75835379 -142201779 + L1PB4 LINE L1 2592 2677 -3469 2721 134 37 4 chr3 75835390 75835838 -142201320 - LTR9B LTR ERV1 0 644 179 2357 143 34 58 chr3 75835838 75836336 -142200822 - LTR19A LTR ERV1 0 486 1 3603 120 20 0 chr3 75836342 75836891 -142200267 - LTR19A-int LTR ERV1 -6 5580 5021 2396 220 90 39 chr3 75836891 75837644 -142199514 + L1PB4 LINE L1 3929 4642 -1504 17755 37 5 0 chr3 75837644 75840584 -142196574 + L1PA3 LINE L1 3213 6155 0 2396 220 90 39 chr3 75840584 75840696 -142196462 + L1PB4 LINE L1 4642 4747 -1399 8278 55 2 0 chr3 75840696 75841660 -142195498 - LTR5 LTR ERVK -3 966 1 2396 220 90 39 chr3 75841660 75841701 -142195457 + L1PB4 LINE L1 4747 4883 -1263 2661 104 42 34 chr3 75841701 75842172 -142194986 - LTR21A LTR ERV1 -13 492 18 278 114 45 0 chr3 75842175 75842219 -142194939 - LTR21A LTR ERV1 -459 46 1 2646 218 42 53 chr3 75842219 75843411 -142193747 + L1PB4 LINE L1 4887 6063 -93 2761 93 56 30 chr3 75843411 75843739 -142193419 + L1PA8 LINE L1 5724 6067 -105 2151 115 0 7 chr3 75843739 75844043 -142193115 + AluSg SINE Alu 1 302 -8 2761 93 56 30 chr3 75844043 75844142 -142193016 + L1PA8 LINE L1 6067 6162 -10 2646 218 42 53 chr3 75844142 75844235 -142192923 + L1PB4 LINE L1 6063 6156 0 1167 207 36 4 chr3 75845070 75845345 -142191813 - L1MA4A LINE L1 -11 6994 6711 3947 191 25 53 chr3 75845420 75845887 -142191271 - L1MA4A LINE L1 -521 6484 6005 1549 215 10 10 chr3 75845887 75846040 -142191118 - AluSx SINE Alu -23 289 134 2189 120 0 3 chr3 75846040 75846340 -142190818 - AluY SINE Alu -12 299 1 1549 215 10 10 chr3 75846340 75846474 -142190684 - AluSx SINE Alu -177 135 2 3947 191 25 53 chr3 75846474 75846501 -142190657 - L1MA4A LINE L1 -1000 6005 5979 1903 149 0 20 chr3 75846501 75846796 -142190362 - AluSg SINE Alu -21 289 1 3947 191 25 53 chr3 75846796 75847902 -142189256 - L1MA4A LINE L1 -1026 5979 4911 3072 108 15 2 chr3 75847924 75848404 -142188754 + LTR15 LTR ERV1 1 486 -7 58953 40 4 6 chr3 75848411 75855793 -142181365 + HERV15 LTR ERV1 1 7373 -1362 7241 39 3 0 chr3 75855802 75856930 -142180228 - L1PA4 LINE L1 0 6155 5033 3190 44 30 2 chr3 75856930 75857332 -142179826 + L1PA4 LINE L1 4618 5030 -1116 11954 23 0 0 chr3 75857332 75858697 -142178461 + HERV15 LTR ERV1 7371 8735 0 3261 105 21 2 chr3 75858697 75859174 -142177984 + LTR15 LTR ERV1 1 486 -7 3843 225 27 98 chr3 75859182 75860126 -142177032 - L1MA4A LINE L1 -1958 4890 3880 811 157 0 0 chr3 75860126 75860247 -142176911 - AluSq/x SINE Alu -190 123 3 2120 125 0 31 chr3 75860251 75860571 -142176587 - AluSx SINE Alu -2 310 1 3843 225 27 98 chr3 75860571 75861043 -142176115 - L1MA4A LINE L1 -2971 3877 3476 2152 104 4 0 chr3 75861043 75861321 -142175837 - AluSc SINE Alu -18 291 13 3843 225 27 98 chr3 75861321 75861457 -142175701 - L1MA4A LINE L1 -3372 3476 3332 852 137 23 0 chr3 75861472 75861603 -142175555 - AluSg/x SINE Alu -18 294 161 1080 205 30 128 chr3 75861612 75862149 -142175009 - L1MA4A LINE L1 -3522 3326 2843 1605 203 84 22 chr3 75862151 75862556 -142174602 - MER9 LTR ERVK 0 511 82 451 55 0 0 chr3 75862556 75862611 -142174547 + AluSx SINE Alu 196 250 -59 366 171 45 68 chr3 75862620 75862708 -142174450 - MER9 LTR ERVK -425 86 1 2936 190 49 8 chr3 75862709 75863361 -142173797 - L1MA4A LINE L1 -4007 2842 2164 4403 192 49 54 chr3 75863363 75864582 -142172576 - L1P3 LINE L1 -5005 1456 317 1310 147 29 17 chr3 75864583 75864907 -142172251 - L1P4 LINE L1 -734 5440 5118 1090 187 32 152 chr3 75865478 75865879 -142171279 - MLT1A1 LTR MaLR -12 353 1 210 122 49 0 chr3 75866625 75866666 -142170492 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 262 282 26 13 chr3 75866719 75866797 -142170361 + L1M4 LINE L1 195 273 -6269 345 280 111 21 chr3 75867068 75867257 -142169901 + L1M4 LINE L1 581 786 -5756 42327 38 22 1 chr3 75867369 75873392 -142163766 - L1PA3 LINE L1 0 6155 3 1759 244 75 42 chr3 75873393 75873737 -142163421 + L1M4 LINE L1 1042 1373 -5273 1958 149 3 3 chr3 75873737 75874039 -142163119 + AluSc SINE Alu 3 304 -5 1759 244 75 42 chr3 75874039 75874568 -142162590 + L1M4 LINE L1 1373 1944 -4702 311 340 0 11 chr3 75874586 75874680 -142162478 + L1M4 LINE L1 1998 2090 -4556 1139 224 60 46 chr3 75874681 75875182 -142161976 + L1M4 LINE L1 2186 2693 -3953 431 192 13 0 chr3 75875415 75875493 -142161665 - LTR47A LTR ERVL 0 452 374 1604 161 0 0 chr3 75875504 75875740 -142161418 + AluSx SINE Alu 11 246 -66 350 100 33 0 chr3 75875770 75875830 -142161328 + AluSx SINE Alu 241 302 0 360 171 189 27 chr3 75875832 75875943 -142161215 - LTR47A LTR ERVL -63 389 261 1376 264 89 56 chr3 75876421 75876776 -142160382 + L1M4c LINE L1 1087 1429 -4932 2148 137 0 0 chr3 75876776 75877089 -142160069 + AluSq SINE Alu 1 313 0 1376 264 89 56 chr3 75877089 75877476 -142159682 + L1M4c LINE L1 1429 1488 -4873 2191 116 3 7 chr3 75877476 75877779 -142159379 + AluSp SINE Alu 1 302 -11 1376 264 89 56 chr3 75877779 75878150 -142159008 + L1M4c LINE L1 1488 1845 -4516 248 230 65 29 chr3 75878279 75878418 -142158740 + L1M4c LINE L1 2145 2288 -4096 1222 197 25 70 chr3 75878455 75878739 -142158419 + AluJb SINE Alu 22 292 -20 2035 262 71 46 chr3 75878739 75880442 -142156716 + L1M4c LINE L1 2388 4254 -2128 238 140 0 53 chr3 75880474 75880531 -142156627 + L1M4c LINE L1 4215 4268 -2114 * 328 290 38 8 chr3 75880522 75880653 -142156505 + L1M4c LINE L1 174 308 -6005 334 313 83 62 chr3 75880665 75880715 -142156443 + L1M4c LINE L1 241 288 -6025 474 33 0 0 chr3 75880715 75880775 -142156383 + (TG)n Simple_repeat Simple_repeat 1 60 0 334 313 83 62 chr3 75880775 75880964 -142156194 + L1M4c LINE L1 288 602 -5711 1879 261 87 43 chr3 75881282 75882563 -142154595 + L1M4c LINE L1 972 1974 -4408 1939 132 11 52 chr3 75882580 75882945 -142154213 - L1MA2 LINE L1 0 6304 5955 350 241 86 46 chr3 75883124 75883300 -142153858 + L1M4c LINE L1 2380 2562 -3820 481 182 159 79 chr3 75883307 75883360 -142153798 + L1M4c LINE L1 3220 3267 -3115 1775 193 3 0 chr3 75883360 75883660 -142153498 + AluSx SINE Alu 1 301 -11 481 182 159 79 chr3 75883660 75883946 -142153212 + L1M4c LINE L1 3267 3586 -2796 867 83 38 0 chr3 75883951 75884083 -142153075 + L1PA13 LINE L1 6025 6161 -2 1513 193 20 33 chr3 75884113 75884418 -142152740 + AluJb SINE Alu 7 307 -5 1435 239 44 18 chr3 75884418 75884869 -142152289 + L1 LINE L1 4622 5084 -1062 1118 270 114 68 chr3 75884890 75884912 -142152246 + LTR9 LTR ERV1 1 21 -591 2083 114 3 7 chr3 75884912 75885201 -142151957 - AluSg SINE Alu -22 288 1 1118 270 114 68 chr3 75885201 75885641 -142151517 + LTR9 LTR ERV1 21 498 -114 1830 180 7 0 chr3 75885641 75885946 -142151212 - AluSx SINE Alu -5 307 1 1118 270 114 68 chr3 75885946 75886067 -142151091 + LTR9 LTR ERV1 498 612 0 362 140 35 0 chr3 75886118 75886175 -142150983 + HUERS-P3b LTR ERV1 38 96 -7322 * 990 211 11 82 chr3 75886168 75886438 -142150720 + HUERS-P3b LTR ERV1 244 494 -6924 1301 260 120 12 chr3 75886487 75887063 -142150095 - L1M4 LINE L1 -1712 4434 3797 1031 177 21 30 chr3 75887061 75887298 -142149860 + L1MC2 LINE L1 6090 6324 -20 * 584 192 100 0 chr3 75887309 75887439 -142149719 + FLAM_C SINE Alu 1 143 0 272 157 20 20 chr3 75887447 75887498 -142149660 + AluSp/q SINE Alu 240 290 -13 23 0 0 0 chr3 75887744 75887767 -142149391 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 75887783 75887804 -142149354 + AT_rich Low_complexity Low_complexity 1 21 0 1625 148 42 0 chr3 75889009 75889272 -142147886 + AluSc SINE Alu 1 274 -35 231 36 0 0 chr3 75889273 75889301 -142147857 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 283 127 55 55 chr3 75889901 75889956 -142147202 - LTR30 LTR ERV1 -667 55 1 266 250 118 0 chr3 75889956 75889990 -142147168 - AluS SINE Alu -260 43 1 1939 124 18 0 chr3 75890210 75890484 -142146674 - AluSg SINE Alu -16 294 16 542 288 68 0 chr3 75891306 75891469 -142145689 - MIR SINE MIR -32 230 57 262 336 92 32 chr3 75893058 75893275 -142143883 - MIR SINE MIR -5 257 28 284 194 73 40 chr3 75893396 75893520 -142143638 + L1MC5 LINE L1 7826 7953 -8 832 282 59 26 chr3 75893642 75893915 -142143243 + AluJo SINE Alu 1 282 -30 207 151 0 38 chr3 75893921 75893974 -142143184 + A-rich Low_complexity Low_complexity 6 56 0 1757 180 7 0 chr3 75894329 75894629 -142142529 + AluSx SINE Alu 1 302 -10 2264 88 3 26 chr3 75895716 75896023 -142141135 + AluY SINE Alu 1 300 -11 1723 176 10 3 chr3 75896225 75896514 -142140644 + AluSx SINE Alu 1 291 -21 22 56 0 0 chr3 75896605 75896641 -142140517 + AT_rich Low_complexity Low_complexity 1 36 0 198 0 0 0 chr3 75896985 75897007 -142140151 + (TA)n Simple_repeat Simple_repeat 1 22 0 21 57 0 0 chr3 75899482 75899517 -142137641 + AT_rich Low_complexity Low_complexity 1 35 0 1040 264 80 50 chr3 75899910 75900448 -142136710 - LTR10B LTR ERV1 -3 544 1 708 201 22 0 chr3 75900512 75900651 -142136507 - FRAM SINE Alu -35 141 1 1994 134 0 50 chr3 75901142 75901360 -142135798 + AluSc SINE Alu 1 200 -109 1635 163 148 20 chr3 75901360 75901759 -142135399 - LTR7 LTR ERV1 0 450 1 1994 134 0 50 chr3 75901759 75901860 -142135298 + AluSc SINE Alu 199 304 -5 24 53 0 0 chr3 75902496 75902534 -142134624 + AT_rich Low_complexity Low_complexity 1 38 0 288 67 22 22 chr3 75903429 75903474 -142133684 + MER4A LTR ERV1 54 98 -566 299 181 8 44 chr3 75903474 75903601 -142133557 + MER4A LTR ERV1 261 441 -223 996 188 109 5 chr3 75903655 75903693 -142133465 + MER4B LTR ERV1 388 421 -189 996 17 0 0 chr3 75903693 75903811 -142133347 + (TTATA)n Simple_repeat Simple_repeat 3 120 0 996 188 109 5 chr3 75903811 75903974 -142133184 + MER4B LTR ERV1 421 610 0 2151 105 107 69 chr3 75903987 75904406 -142132752 + MER4B-int LTR ERV1 13 447 -6151 2912 111 32 14 chr3 75904458 75904899 -142132259 - LTR2 LTR ERV1 0 449 1 1246 183 0 0 chr3 75904899 75905107 -142132051 - Harlequin LTR ERV1 0 6896 6689 1764 175 57 21 chr3 75905312 75905688 -142131470 + LTR10A LTR ERV1 172 609 0 341 183 14 0 chr3 75905692 75905763 -142131395 + MER4B-int LTR ERV1 509 580 -6018 * 1399 116 28 88 chr3 75905762 75905808 -142131350 + MER4B-int LTR ERV1 517 564 -4451 216 67 0 0 chr3 75905808 75905838 -142131320 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1399 116 28 88 chr3 75905838 75906156 -142131002 + MER4B-int LTR ERV1 564 805 -4210 * 2167 128 96 21 chr3 75906154 75906591 -142130567 + MER4B-int LTR ERV1 1804 2273 -4325 3202 127 22 6 chr3 75906591 75907094 -142130064 - MER9 LTR ERVK 0 511 1 29063 106 16 23 chr3 75907094 75911621 -142125537 - HERVK9 LTR ERVK 0 5916 1424 3452 125 11 21 chr3 75911619 75912193 -142124965 - HERVK9 LTR ERVK -5348 568 1 * 3382 120 12 6 chr3 75912193 75912701 -142124457 - MER9 LTR ERVK 0 511 1 1272 62 8 131 chr3 75912701 75912883 -142124275 + MER4-int LTR ERV1 2268 2410 -4188 2121 134 0 3 chr3 75912883 75913175 -142123983 - AluSx SINE Alu -21 291 1 1272 62 8 131 chr3 75913175 75913252 -142123906 + MER4-int LTR ERV1 2410 2495 -4103 973 186 167 5 chr3 75913252 75913473 -142123685 - LTR8 LTR ERV1 -434 257 1 1664 126 101 61 chr3 75913473 75913812 -142123346 + MER4B-int LTR ERV1 2737 3061 -1819 1790 159 17 20 chr3 75913812 75914113 -142123045 + AluSq SINE Alu 14 313 0 1664 126 101 61 chr3 75914113 75914291 -142122867 + MER4B-int LTR ERV1 3061 4321 -559 7649 136 65 20 chr3 75914305 75915915 -142121243 + MER4-int LTR ERV1 3882 5563 -1035 40420 37 21 2 chr3 75915943 75921973 -142115185 - L1PA2 LINE L1 0 6155 4 1684 150 52 0 chr3 75921973 75922240 -142114918 - AluSg SINE Alu -29 281 1 1986 142 3 0 chr3 75922241 75922529 -142114629 - AluSp SINE Alu -1 312 24 2016 107 11 34 chr3 75922530 75922885 -142114273 + MER4-int LTR ERV1 4055 4401 -614 20845 134 12 13 chr3 75922905 75926533 -142110625 + L1P LINE L1 11 3633 -2513 6801 70 2 2 chr3 75926533 75927688 -142109470 - L1PA6 LINE L1 -1 6153 4997 858 103 87 16 chr3 75927710 75927895 -142109263 + MER4-int LTR ERV1 6075 6272 -326 184 281 157 34 chr3 75927901 75927990 -142109168 + L2 LINE L2 2631 2730 -584 278 221 58 29 chr3 75928118 75928222 -142108936 + L1MB2 LINE L1 3533 3639 -2507 1829 177 3 0 chr3 75928493 75928793 -142108365 + AluSx SINE Alu 1 301 -11 280 273 23 0 chr3 75928796 75928884 -142108274 + L1M4c LINE L1 1444 1533 -4851 2828 248 116 41 chr3 75928886 75930522 -142106636 - L1M4c LINE L1 -1706 4676 2919 1291 217 62 0 chr3 75930530 75930788 -142106370 + AluJo SINE Alu 9 282 -30 414 0 0 0 chr3 75930800 75930846 -142106312 + (TAA)n Simple_repeat Simple_repeat 2 47 0 198 0 0 0 chr3 75930845 75930867 -142106291 + (GA)n Simple_repeat Simple_repeat 2 23 0 * 980 252 65 9 chr3 75930976 75931679 -142105479 - L1M4c LINE L1 -3542 2840 2098 484 249 81 1 chr3 75931796 75932017 -142105141 - L1M4c LINE L1 -4456 1926 1612 434 295 57 34 chr3 75932043 75932408 -142104750 - L1M4c LINE L1 -4517 1786 1128 247 81 0 27 chr3 75932420 75932457 -142104701 + (TTCC)n Simple_repeat Simple_repeat 3 38 0 353 147 0 15 chr3 75932458 75932526 -142104632 + (TCCCC)n Simple_repeat Simple_repeat 5 71 0 851 228 103 23 chr3 75932530 75932793 -142104365 - AluJo SINE Alu -3 309 26 332 276 24 24 chr3 75932795 75932922 -142104236 - L1M4c LINE L1 -5265 1119 993 663 266 15 0 chr3 75932933 75933136 -142104022 + L1MB2 LINE L1 3734 3939 -2207 1281 221 4 30 chr3 75933140 75933402 -142103756 + AluJo SINE Alu 1 255 -57 204 40 0 0 chr3 75933431 75933456 -142103702 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 2158 254 87 44 chr3 75933483 75933783 -142103375 + L1MB2 LINE L1 3967 4253 -1893 369 0 0 0 chr3 75933783 75933824 -142103334 + (CA)n Simple_repeat Simple_repeat 2 42 0 2158 254 87 44 chr3 75933824 75934711 -142102447 + L1MB2 LINE L1 4253 5205 -941 234 0 0 0 chr3 75934711 75934737 -142102421 + (A)n Simple_repeat Simple_repeat 1 26 0 1734 208 89 109 chr3 75934741 75935290 -142101868 + L1MB2 LINE L1 5299 5857 -314 1475 113 5 0 chr3 75935290 75935485 -142101673 + AluSc SINE Alu 1 196 -113 337 115 16 0 chr3 75935486 75935547 -142101611 + AluSc SINE Alu 238 299 0 1734 208 89 109 chr3 75935547 75935786 -142101372 + L1MB2 LINE L1 5856 6132 -39 1952 160 7 0 chr3 75935807 75936113 -142101045 + AluSx SINE Alu 5 312 0 651 244 76 23 chr3 75936144 75936447 -142100711 + Charlie2 DNA MER1_type 2004 2322 -540 638 329 71 53 chr3 75936582 75937220 -142099938 - L2 LINE L2 -255 3058 2415 1339 188 22 43 chr3 75937282 75937559 -142099599 - AluJo SINE Alu -21 291 21 749 226 84 8 chr3 75937635 75938002 -142099156 + Charlie2 DNA MER1_type 2393 2787 -75 430 320 74 7 chr3 75938048 75938332 -142098826 - L1ME LINE L1 -482 5688 5386 424 258 27 86 chr3 75938470 75938553 -142098605 - L1ME LINE L1 -888 5258 5172 1646 197 17 14 chr3 75938553 75938843 -142098315 + AluJb SINE Alu 1 291 -21 424 258 27 86 chr3 75938843 75938980 -142098178 - L1ME LINE L1 -974 5172 5051 335 263 103 67 chr3 75938992 75939216 -142097942 + L1ME3A LINE L1 5793 6024 -146 314 331 83 6 chr3 75939313 75939482 -142097676 + MIR SINE MIR 9 190 -72 807 269 47 25 chr3 75939624 75939903 -142097255 - MLT1E LTR MaLR -1 592 308 250 267 13 13 chr3 75939913 75939988 -142097170 - MLT1F LTR MaLR -467 75 1 2090 128 3 0 chr3 75940140 75940436 -142096722 + AluSg1 SINE Alu 1 297 -12 236 190 0 89 chr3 75941576 75941655 -142095503 + CT-rich Low_complexity Low_complexity 4 75 0 2736 93 30 5 chr3 75942275 75942703 -142094455 - LTR7 LTR ERV1 -11 439 1 500 228 80 25 chr3 75942833 75942926 -142094232 + MER45A DNA AcHobo 1 108 -1473 1865 163 30 3 chr3 75942926 75943227 -142093931 - AluSx SINE Alu -3 309 1 500 228 80 25 chr3 75943227 75943295 -142093863 + MER45A DNA AcHobo 108 171 -7 336 323 74 9 chr3 75943537 75943754 -142093404 - LTR50 LTR ERVL -112 683 453 863 273 92 44 chr3 75944106 75944561 -142092597 + L1M4 LINE L1 8 484 -6058 877 267 31 16 chr3 75944579 75945044 -142092114 - MER74A LTR ERVL 0 622 89 373 314 80 29 chr3 75945089 75945328 -142091830 + L1M4 LINE L1 523 773 -5769 1029 174 107 101 chr3 75945347 75945483 -142091675 + AluY SINE Alu 1 135 -166 1179 117 0 0 chr3 75945483 75945663 -142091495 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1029 174 107 101 chr3 75945663 75945824 -142091334 + AluY SINE Alu 135 300 -1 213 296 0 0 chr3 75945833 75945904 -142091254 + A-rich Low_complexity Low_complexity 1 71 0 467 257 71 11 chr3 75945928 75946111 -142091047 + L1M4 LINE L1 984 1177 -5365 264 230 40 20 chr3 75946157 75946257 -142090901 - L1MA8 LINE L1 -3 6288 6187 654 200 75 0 chr3 75946293 75946413 -142090745 - FLAM_A SINE Alu 0 133 5 599 201 20 106 chr3 75946413 75946667 -142090491 - L1M3e LINE L1 -3280 3048 2817 497 129 43 0 chr3 75946716 75946809 -142090349 + L1 LINE L1 3479 3575 -2571 902 227 33 115 chr3 75946861 75947345 -142089813 - L1M3e LINE L1 -3514 2814 2379 2198 96 0 20 chr3 75947345 75947638 -142089520 - AluSc SINE Alu -22 287 1 902 227 33 115 chr3 75947638 75947700 -142089458 - L1M3e LINE L1 -3949 2379 2313 376 156 0 0 chr3 75947705 75947769 -142089389 - AluSx SINE Alu -9 292 229 666 229 28 1 chr3 75947796 75947982 -142089176 - MER61E LTR ERV1 -6 773 340 361 174 65 11 chr3 75948160 75948252 -142088906 - LTR25 LTR ERV1 -428 366 270 1251 155 0 21 chr3 75948425 75948619 -142088539 - AluSq SINE Alu -24 289 100 294 95 0 0 chr3 75948619 75948661 -142088497 + (A)n Simple_repeat Simple_repeat 1 42 0 839 129 9 0 chr3 75948661 75948777 -142088381 - AluSq SINE Alu -196 117 1 267 233 56 33 chr3 75948780 75948870 -142088288 - LTR9 LTR ERV1 -512 100 9 1259 173 4 76 chr3 75948878 75948976 -142088182 - AluSx SINE Alu -79 233 129 2154 113 3 10 chr3 75948976 75949277 -142087881 - AluSg SINE Alu -11 299 1 1259 173 4 76 chr3 75949277 75949427 -142087731 - AluSx SINE Alu -183 129 3 1299 240 182 42 chr3 75949428 75949684 -142087474 - L1M3e LINE L1 -3996 2332 2113 1951 133 4 7 chr3 75949684 75949991 -142087167 + AluSp SINE Alu 5 310 0 1299 240 182 42 chr3 75949991 75950080 -142087078 - L1M3e LINE L1 -4215 2113 2038 1149 210 100 15 chr3 75950080 75950351 -142086807 - AluJb SINE Alu -8 294 1 1299 240 182 42 chr3 75950351 75950962 -142086196 - L1M3e LINE L1 -4290 2038 1260 21 36 0 0 chr3 75950977 75951005 -142086153 + AT_rich Low_complexity Low_complexity 1 28 0 222 134 45 0 chr3 75951014 75951081 -142086077 + (TA)n Simple_repeat Simple_repeat 1 70 0 550 219 65 14 chr3 75951105 75951320 -142085838 - L1 LINE L1 -4141 1187 962 471 149 0 0 chr3 75951330 75951404 -142085754 + AluS SINE Alu 227 300 -10 381 242 63 77 chr3 75951425 75951506 -142085652 - L1M3e LINE L1 -4984 1268 1187 2097 138 0 7 chr3 75951506 75951802 -142085356 - AluSx SINE Alu -18 294 1 381 242 63 77 chr3 75951802 75951970 -142085188 - L1M3e LINE L1 -5065 1187 1018 2201 173 68 15 chr3 75951970 75952437 -142084721 + LTR22B LTR ERVK 1 492 0 381 242 63 77 chr3 75952437 75952482 -142084676 - L1M3e LINE L1 -5234 1018 661 228 371 9 0 chr3 75952583 75952699 -142084459 - L1M3e LINE L1 -4754 574 458 1097 153 67 40 chr3 75952708 75952931 -142084227 + MER30 DNA MER1_type 2 230 0 4200 216 79 61 chr3 75952949 75954398 -142082760 + L1PB4 LINE L1 27 1448 -4880 1820 187 0 3 chr3 75954398 75954692 -142082466 + AluSx SINE Alu 1 293 -19 4200 216 79 61 chr3 75954692 75955553 -142081605 + L1PB4 LINE L1 1448 2383 -3945 1550 217 3 6 chr3 75955553 75955866 -142081292 + AluJb SINE Alu 1 312 0 4200 216 79 61 chr3 75955866 75956515 -142080643 + L1PB4 LINE L1 2383 3018 -3310 1186 238 13 16 chr3 75956537 75956825 -142080333 + L1PB4 LINE L1 4558 4846 -1482 198 0 0 0 chr3 75956825 75956847 -142080311 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1186 238 13 16 chr3 75956847 75956936 -142080222 + L1PB4 LINE L1 4846 4934 -1394 1710 176 3 14 chr3 75956937 75957226 -142079932 + AluJb SINE Alu 3 288 -24 198 50 75 0 chr3 75957226 75957266 -142079892 + (TA)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr3 75957304 75957325 -142079833 + AT_rich Low_complexity Low_complexity 1 21 0 243 241 101 0 chr3 75957350 75957429 -142079729 + L1MC4 LINE L1 6612 6698 -1344 1016 230 22 4 chr3 75957438 75957712 -142079446 + L1PB4 LINE L1 4920 5198 -1130 3873 163 7 4 chr3 75957712 75958450 -142078708 - L1P LINE L1 -1195 4951 4212 4285 131 10 0 chr3 75958454 75959127 -142078031 + L1PA10 LINE L1 5486 6165 -3 1852 148 0 0 chr3 75959155 75959426 -142077732 - AluSx SINE Alu -41 271 1 4303 185 39 1 chr3 75959430 75960486 -142076672 + L1PB4 LINE L1 5227 6330 -8 461 306 48 77 chr3 75960577 75960697 -142076461 + L1MC4a LINE L1 4910 5032 -1114 2158 136 10 0 chr3 75960697 75961006 -142076152 + AluSx SINE Alu 1 312 0 461 306 48 77 chr3 75961006 75961382 -142075776 + L1MC4a LINE L1 5032 5392 -754 2232 120 3 0 chr3 75961385 75961684 -142075474 + AluSg SINE Alu 1 300 -10 1046 233 39 16 chr3 75961729 75961987 -142075171 + AluJo SINE Alu 19 282 -30 1102 293 75 22 chr3 75962025 75962653 -142074505 + L1MC4a LINE L1 5440 6100 -1708 3902 237 76 96 chr3 75962662 75963814 -142073344 - L1PA15-16 LINE L1 -3733 3116 1942 996 177 0 0 chr3 75963814 75963987 -142073171 - AluSg/x SINE Alu 0 306 134 3902 237 76 96 chr3 75963987 75965019 -142072139 - L1PA15-16 LINE L1 -4907 1942 600 1719 209 24 40 chr3 75965022 75965329 -142071829 - L1PA15-16 LINE L1 -6433 416 116 2165 137 0 10 chr3 75965329 75965643 -142071515 - AluSx SINE Alu -1 311 1 1719 209 24 40 chr3 75965643 75965756 -142071402 - L1PA15-16 LINE L1 -6733 116 3 471 214 24 8 chr3 75965761 75965887 -142071271 - L1M4c LINE L1 -2535 3847 3720 574 183 161 0 chr3 75965989 75966126 -142071032 + AluJb SINE Alu 1 159 -153 384 249 138 37 chr3 75966154 75966479 -142070679 - L1M4c LINE L1 -2694 3688 3331 360 285 48 30 chr3 75966494 75966764 -142070394 - L1M4c LINE L1 -3270 3112 2702 185 269 0 8 chr3 75966787 75966921 -142070237 + (TA)n Simple_repeat Simple_repeat 2 134 0 1063 200 10 10 chr3 75966970 75967170 -142069988 - AluJb SINE Alu -112 200 1 2095 125 23 0 chr3 75967336 75967639 -142069519 + AluSg SINE Alu 1 310 0 1217 153 13 47 chr3 75968277 75968513 -142068645 + MER57A LTR ERV1 135 362 -41 482 191 91 100 chr3 75968526 75968756 -142068402 - L1M4c LINE L1 -4014 2370 2143 1329 291 79 16 chr3 75968847 75969889 -142067269 - L1M4c LINE L1 -4244 2139 1041 366 327 75 31 chr3 75970315 75970541 -142066617 - L1M4c LINE L1 -5896 417 182 418 237 109 11 chr3 75970541 75970824 -142066334 + L1MDb LINE L1 1053 1363 -5046 5868 211 153 11 chr3 75970824 75972304 -142064854 - MER52A LTR ERV1 0 1755 67 1181 274 140 41 chr3 75972333 75972632 -142064526 + L1M4 LINE L1 2737 3005 -3141 1374 227 52 0 chr3 75972632 75972901 -142064257 - AluJo SINE Alu -27 285 3 1181 274 140 41 chr3 75972901 75974105 -142063053 + L1M4 LINE L1 3005 4389 -1757 8076 238 61 50 chr3 75974129 75977555 -142059603 + L1MA4A LINE L1 9 3399 -3449 1474 200 54 0 chr3 75977555 75977835 -142059323 + AluJo SINE Alu 5 299 -13 8076 238 61 50 chr3 75977835 75977856 -142059302 + L1MA4A LINE L1 3399 3418 -3430 575 178 44 59 chr3 75977856 75977991 -142059167 + FLAM_C SINE Alu 1 133 0 8076 238 61 50 chr3 75977991 75978635 -142058523 + L1MA4A LINE L1 3418 4148 -2700 1864 142 44 3 chr3 75978635 75978931 -142058227 + AluSg1 SINE Alu 1 308 -1 8076 238 61 50 chr3 75978931 75979177 -142057981 + L1MA4A LINE L1 4148 4390 -2458 2603 203 57 37 chr3 75979328 75979815 -142057343 + L1MA4A LINE L1 5215 5691 -1199 1648 174 8 0 chr3 75979815 75980079 -142057079 + AluSq SINE Alu 24 289 -24 378 57 43 14 chr3 75980082 75980152 -142057006 + (TAAAA)n Simple_repeat Simple_repeat 2 73 0 2603 203 57 37 chr3 75980152 75980587 -142056571 + L1MA4A LINE L1 5692 6145 -745 1722 198 24 54 chr3 75980601 75980658 -142056500 + L1MA4A LINE L1 6520 6577 -428 1645 195 7 0 chr3 75980658 75980945 -142056213 - AluJb SINE Alu -23 289 1 1722 198 24 54 chr3 75980945 75981388 -142055770 + L1MA4A LINE L1 6577 7005 0 360 309 73 0 chr3 75981400 75981536 -142055622 + L1M2 LINE L1 5131 5276 -1572 611 268 130 13 chr3 75981623 75982008 -142055150 + L1M2 LINE L1 5299 5728 -1120 1985 133 7 7 chr3 75982798 75983091 -142054067 - AluSx SINE Alu -17 295 3 2052 115 33 10 chr3 75983440 75983744 -142053414 + AluSq SINE Alu 2 312 -1 1966 139 0 44 chr3 75984244 75984560 -142052598 + AluSg SINE Alu 1 302 -8 201 220 40 0 chr3 75985754 75985804 -142051354 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 25 0 0 0 chr3 75986159 75986184 -142050974 + AT_rich Low_complexity Low_complexity 1 25 0 2158 124 7 0 chr3 75986855 75987153 -142050005 - AluSp SINE Alu -11 302 3 22 35 0 0 chr3 75987295 75987324 -142049834 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 75988025 75988046 -142049112 + AT_rich Low_complexity Low_complexity 1 21 0 2797 3 0 0 chr3 75988735 75989037 -142048121 + AluYa5 SINE Alu 1 302 -9 3348 122 8 6 chr3 75989363 75989873 -142047285 + MER9 LTR ERVK 1 511 0 24579 76 9 7 chr3 75989873 75993274 -142043884 + HERVK9 LTR ERVK 1 3409 -2507 15054 73 6 0 chr3 75993296 75995315 -142041843 + HERVK9 LTR ERVK 3603 5634 -282 926 61 23 0 chr3 75995411 75995542 -142041616 + HERVK9 LTR ERVK 5635 5768 -148 236 315 0 0 chr3 76096886 76096940 -141940218 - L2 LINE L2 -9 3263 3210 231 354 112 46 chr3 76096951 76097236 -141939922 + L3 LINE CR1 1062 1365 -212 22 0 0 0 chr3 76098876 76098898 -141938260 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 76101789 76101810 -141935348 + AT_rich Low_complexity Low_complexity 1 21 0 436 297 54 59 chr3 76103551 76103773 -141933385 - MIR SINE MIR -34 228 8 926 172 45 0 chr3 76104159 76104357 -141932801 + MER65A LTR ERV1 239 445 0 1339 289 29 51 chr3 76104663 76105541 -141931617 - Tigger6a DNA MER2_type -8 1075 218 258 293 0 13 chr3 76105722 76105797 -141931361 + L2 LINE L2 3196 3269 -3 195 313 159 43 chr3 76106002 76106235 -141930923 + L2 LINE L2 2481 2740 -574 454 318 127 48 chr3 76106282 76106700 -141930458 + L2 LINE L2 2859 3309 -4 22 0 0 0 chr3 76107303 76107325 -141929833 + AT_rich Low_complexity Low_complexity 1 22 0 185 297 16 0 chr3 76107357 76107421 -141929737 - MER5A DNA MER1_type -24 165 101 773 178 0 0 chr3 76107936 76108065 -141929093 + AluSx SINE Alu 33 161 -151 785 261 16 77 chr3 76108461 76108901 -141928257 + Charlie4a DNA MER1_type 24 436 -72 990 244 37 0 chr3 76108902 76109119 -141928039 + AluJo SINE Alu 51 275 -37 27 0 0 0 chr3 76109129 76109156 -141928002 + AT_rich Low_complexity Low_complexity 1 27 0 1087 253 37 13 chr3 76109545 76109955 -141927203 - L1 LINE L1 -1203 4943 4518 647 291 9 9 chr3 76110011 76110231 -141926927 - MER58A DNA MER1_type -2 222 3 1209 228 13 17 chr3 76111466 76111764 -141925394 - AluJo SINE Alu -15 297 1 1510 153 71 4 chr3 76112751 76113006 -141924152 - AluSq SINE Alu -41 272 1 384 317 34 14 chr3 76113332 76113540 -141923618 - MLT1I LTR MaLR -2 407 196 250 325 33 17 chr3 76115467 76115587 -141921571 - MIR SINE MIR -30 232 111 987 179 40 4 chr3 76116882 76117134 -141920024 - MER33 DNA MER1_type -8 316 56 24 0 0 0 chr3 76117591 76117615 -141919543 + AT_rich Low_complexity Low_complexity 1 24 0 954 228 58 86 chr3 76118072 76118524 -141918634 + L1MC4 LINE L1 6579 7017 -1025 387 0 0 0 chr3 76118567 76118610 -141918548 + (CA)n Simple_repeat Simple_repeat 2 44 0 361 251 89 10 chr3 76118643 76118857 -141918301 + L1MA9 LINE L1 6040 6265 -26 22 0 0 0 chr3 76118857 76118879 -141918279 + AT_rich Low_complexity Low_complexity 1 22 0 244 266 88 37 chr3 76118885 76119182 -141917976 + L1MC4 LINE L1 7089 7400 -642 323 345 26 42 chr3 76120983 76121174 -141915984 - MER5A DNA MER1_type -1 188 1 1174 289 24 27 chr3 76122782 76123156 -141914002 - LTR16C LTR ERVL -2 489 117 186 203 0 62 chr3 76124091 76124155 -141913003 - L2 LINE L2 0 3313 3254 899 178 7 122 chr3 76125459 76125607 -141911551 - L1MB4 LINE L1 -15 6165 6064 2078 79 48 20 chr3 76125607 76125899 -141911259 + AluSc SINE Alu 7 306 -3 899 178 7 122 chr3 76125899 76126036 -141911122 - L1MB4 LINE L1 -116 6064 5913 1040 252 91 54 chr3 76126036 76126441 -141910717 - LOR1b LTR ERV1 0 461 42 25 0 0 28 chr3 76126764 76126782 -141910376 + AT_rich Low_complexity Low_complexity 1 18 -17 1405 193 44 3 chr3 76126782 76127078 -141910080 + AluY SINE Alu 4 311 0 25 0 0 28 chr3 76127078 76127095 -141910063 + AT_rich Low_complexity Low_complexity 18 35 0 24 0 0 0 chr3 76127498 76127522 -141909636 + AT_rich Low_complexity Low_complexity 1 24 0 243 178 37 84 chr3 76127639 76127746 -141909412 - MLT1J LTR MaLR -11 500 399 1357 157 168 80 chr3 76128509 76128860 -141908298 - MER4A LTR ERV1 -26 638 257 491 129 54 11 chr3 76128857 76128950 -141908208 - MER4A LTR ERV1 -567 97 1 * 3585 129 55 9 chr3 76128957 76129643 -141907515 - MER4A-int LTR ERV1 -2 6596 5189 271 333 48 16 chr3 76130462 76130588 -141906570 + MIR SINE MIR 20 149 -113 1228 214 51 71 chr3 76131305 76131753 -141905405 + L1MC4 LINE L1 6579 7017 -1025 387 0 0 0 chr3 76131796 76131839 -141905319 + (CA)n Simple_repeat Simple_repeat 2 44 0 420 223 110 15 chr3 76131857 76132107 -141905051 + L1MA9 LINE L1 6021 6288 -3 2634 207 78 61 chr3 76132114 76133052 -141904106 + L1MC4 LINE L1 7089 8042 0 204 385 72 0 chr3 76133105 76133271 -141903887 + MIR SINE MIR 85 262 0 2240 61 47 0 chr3 76134128 76134407 -141902751 - AluY SINE Alu -18 293 2 297 0 0 0 chr3 76134787 76134820 -141902338 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 2064 121 4 0 chr3 76135418 76135727 -141901431 + AluSx SINE Alu 1 310 0 240 250 105 0 chr3 76135930 76136006 -141901152 - MER91C DNA MER1_type -3 137 54 263 241 35 15 chr3 76136408 76136576 -141900582 + L1MB8 LINE L1 5754 5925 -253 310 346 31 31 chr3 76136899 76137029 -141900129 - L2 LINE L2 -3 3310 3181 312 325 89 8 chr3 76137376 76137499 -141899659 + L2 LINE L2 2948 3080 -192 180 248 208 64 chr3 76137601 76137726 -141899432 - MER5A DNA MER1_type -26 163 21 220 287 23 58 chr3 76137735 76137822 -141899336 + L2 LINE L2 3168 3251 -21 193 214 24 0 chr3 76137845 76137887 -141899271 - L2 LINE L2 -5 3267 3225 236 303 22 67 chr3 76138506 76138595 -141898563 + L2 LINE L2 3168 3252 -20 1104 186 69 29 chr3 76139358 76139664 -141897494 + MER33 DNA MER1_type 5 322 -2 2368 117 0 6 chr3 76139961 76140311 -141896847 + THE1B LTR MaLR 17 364 0 214 115 39 0 chr3 76140664 76140716 -141896442 + (CAA)n Simple_repeat Simple_repeat 1 54 0 833 271 41 9 chr3 76140739 76140960 -141896198 - MIR SINE MIR -19 243 16 226 309 60 77 chr3 76141761 76142046 -141895112 + L2 LINE L2 1745 2024 -1290 225 0 0 0 chr3 76142732 76142757 -141894401 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 203 343 29 0 chr3 76143899 76143969 -141893189 + L2 LINE L2 3201 3272 0 247 210 32 16 chr3 76144380 76144442 -141892716 - LTR50 LTR ERVL -725 70 8 1025 232 5 0 chr3 76144510 76144721 -141892437 + MER58A DNA MER1_type 3 214 -10 4049 208 29 13 chr3 76144783 76146398 -141890760 + L1PA16 LINE L1 4518 6157 -9 315 293 42 58 chr3 76147065 76147256 -141889902 - MER5A DNA MER1_type -1 188 1 221 274 71 24 chr3 76147756 76147840 -141889318 + L2 LINE L2 3185 3272 0 236 380 72 0 chr3 76149210 76149376 -141887782 - MIR SINE MIR 0 262 85 2605 211 53 163 chr3 76149429 76150582 -141886576 - L1MC4 LINE L1 0 8042 7121 396 0 0 0 chr3 76150582 76150626 -141886532 + (TG)n Simple_repeat Simple_repeat 1 44 0 2605 211 53 163 chr3 76150626 76151116 -141886042 - L1MC4 LINE L1 -921 7121 6579 24 0 0 0 chr3 76151571 76151595 -141885563 + AT_rich Low_complexity Low_complexity 1 24 0 432 234 14 28 chr3 76152648 76152789 -141884369 - MER103 DNA DNA -21 145 7 225 0 0 0 chr3 76153792 76153817 -141883341 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 182 284 30 104 chr3 76154728 76154862 -141882296 + MIR3 SINE MIR 76 199 -9 460 284 52 62 chr3 76154932 76155143 -141882015 - MIR SINE MIR -45 217 9 420 302 54 59 chr3 76155357 76155579 -141881579 + MIR SINE MIR 8 228 -34 510 273 51 43 chr3 76156474 76156730 -141880428 - L1MC4 LINE L1 -1976 5832 5575 346 350 143 10 chr3 76157805 76158008 -141879150 + MIR SINE MIR 20 249 -13 182 103 0 26 chr3 76160376 76160415 -141876743 + (CAAAA)n Simple_repeat Simple_repeat 1 38 0 3014 179 66 12 chr3 76160691 76161372 -141875786 - MER50 LTR ERV1 -16 718 1 1163 150 7 113 chr3 76161808 76161971 -141875187 - L1MB4 LINE L1 0 6180 6062 2141 82 48 17 chr3 76161971 76162263 -141874895 + AluSc SINE Alu 7 307 -2 1163 150 7 113 chr3 76162263 76162399 -141874759 - L1MB4 LINE L1 -118 6062 5913 932 141 150 52 chr3 76162399 76162612 -141874546 - LOR1a LTR ERV1 0 497 264 495 126 95 0 chr3 76162713 76162808 -141874350 - L1MB4 LINE L1 -317 5867 5764 362 288 75 71 chr3 76162877 76163089 -141874069 + MIR SINE MIR 31 243 -19 409 318 24 33 chr3 76164420 76164631 -141872527 + MIR SINE MIR 48 256 -6 189 0 0 0 chr3 76165827 76165848 -141871310 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 590 356 64 42 chr3 76166796 76167153 -141870005 - L2 LINE L2 -1 3271 2907 377 160 0 43 chr3 76167309 76167403 -141869755 + MER53 DNA DNA 42 131 -58 244 96 41 27 chr3 76167410 76167483 -141869675 + (TA)n Simple_repeat Simple_repeat 2 75 0 212 250 29 15 chr3 76167512 76167580 -141869578 - L2 LINE L2 -554 2760 2692 336 200 50 0 chr3 76167723 76167803 -141869355 - MER57A LTR ERV1 0 403 320 4706 163 3 34 chr3 76167807 76168668 -141868490 - MER66-int LTR ERV1 -556 6120 5286 499 231 15 30 chr3 76168668 76168802 -141868356 - MER66B LTR ERV1 -354 132 1 362 197 101 144 chr3 76168803 76169011 -141868147 - MER57A LTR ERV1 -200 203 5 272 320 54 116 chr3 76169019 76169313 -141867845 + L2 LINE L2 2997 3272 0 934 188 74 80 chr3 76170442 76170819 -141866339 - Charlie5 DNA MER1_type 0 2619 2245 521 222 26 0 chr3 76170826 76170943 -141866215 - Charlie5 DNA MER1_type -2488 124 5 1615 189 58 21 chr3 76171643 76171753 -141865405 + MLT1B LTR MaLR 1 105 -285 2075 143 0 0 chr3 76171753 76172061 -141865097 + AluY SINE Alu 1 308 -3 1615 189 58 21 chr3 76172061 76172326 -141864832 + MLT1B LTR MaLR 105 390 0 321 316 146 12 chr3 76172358 76172529 -141864629 + MIR SINE MIR 4 197 -65 217 323 268 4 chr3 76174279 76174533 -141862625 + L2 LINE L2 2244 2564 -750 236 245 0 0 chr3 76174554 76174603 -141862555 + GA-rich Low_complexity Low_complexity 1 49 0 2047 96 114 24 chr3 76174662 76174996 -141862162 + THE1B LTR MaLR 1 364 0 778 131 8 0 chr3 76175030 76175160 -141861998 - L1MB2 LINE L1 -39 6132 6002 222 37 0 0 chr3 76176538 76176565 -141860593 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 294 341 154 24 chr3 76176638 76176846 -141860312 + MIR SINE MIR 1 235 -27 264 295 63 0 chr3 76177194 76177289 -141859869 + L2 LINE L2 3193 3293 -20 1558 169 12 99 chr3 76177465 76177890 -141859268 + MLT1B LTR MaLR 1 388 -2 2401 101 0 0 chr3 76179785 76180093 -141857065 + AluSc SINE Alu 1 308 -1 239 296 37 0 chr3 76180205 76180286 -141856872 + L2 LINE L2 3229 3312 -1 303 345 9 17 chr3 76180339 76180455 -141856703 - MIR SINE MIR -119 143 29 423 295 47 61 chr3 76180929 76181360 -141855798 + MLT1F LTR MaLR 120 554 -1 2108 126 3 3 chr3 76182215 76182508 -141854650 + AluSx SINE Alu 1 293 -19 2281 88 24 0 chr3 76182547 76182842 -141854316 + AluSx SINE Alu 1 302 -10 207 0 0 0 chr3 76183440 76183463 -141853695 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 805 289 97 13 chr3 76184010 76184383 -141852775 + MLT1I LTR MaLR 4 407 -2 1872 94 71 4 chr3 76184709 76184964 -141852194 + AluSq SINE Alu 1 272 -41 290 279 125 15 chr3 76185969 76186105 -141851053 - L3 LINE CR1 -1 1576 1426 * 316 301 0 0 chr3 76186083 76186166 -141850992 + MIR SINE MIR 143 225 -37 241 246 138 0 chr3 76186307 76186372 -141850786 - MIR SINE MIR -5 257 184 326 255 114 54 chr3 76186377 76186633 -141850525 - L1MC4 LINE L1 -5 8037 7798 2268 104 13 0 chr3 76186633 76186942 -141850216 - AluSp SINE Alu 0 313 1 326 255 114 54 chr3 76186942 76187250 -141849908 - L1MC4 LINE L1 -244 7798 7333 391 204 293 7 chr3 76187263 76187410 -141849748 - MER3 DNA MER1_type -16 193 5 230 260 26 0 chr3 76187599 76187676 -141849482 - Charlie4a DNA MER1_type 0 508 430 1348 213 31 0 chr3 76187676 76187930 -141849228 - AluJo SINE Alu 0 312 51 863 252 22 76 chr3 76187931 76188392 -141848766 - Charlie4a DNA MER1_type -72 436 1 355 276 103 26 chr3 76188586 76188702 -141848456 - MIR SINE MIR -117 145 21 483 319 92 11 chr3 76188833 76189115 -141848043 - L3 LINE CR1 -420 1157 853 28 0 0 0 chr3 76189295 76189323 -141847835 + AT_rich Low_complexity Low_complexity 1 28 0 220 160 20 20 chr3 76189386 76189436 -141847722 + (TCCA)n Simple_repeat Simple_repeat 2 51 0 242 288 159 53 chr3 76189436 76189700 -141847458 - L2 LINE L2 0 3313 3022 2173 145 64 7 chr3 76190067 76190229 -141846929 + MER65A LTR ERV1 1 152 -293 408 20 0 0 chr3 76190229 76190278 -141846880 + (CA)n Simple_repeat Simple_repeat 2 50 0 2173 145 64 7 chr3 76190278 76190536 -141846622 + MER65A LTR ERV1 152 445 0 284 319 29 29 chr3 76190757 76190834 -141846324 + Charlie8 DNA MER1_type 1 80 -2337 4483 199 27 34 chr3 76190834 76191924 -141845234 - Tigger6a DNA MER2_type 0 1083 2 284 319 29 29 chr3 76191924 76191984 -141845174 + Charlie8 DNA MER1_type 79 138 -2279 526 184 157 14 chr3 76192177 76192324 -141844834 - MER3 DNA MER1_type -41 168 1 847 232 19 0 chr3 76193113 76193320 -141843838 - Tigger6a DNA MER2_type -859 224 14 526 184 157 14 chr3 76193582 76193729 -141843429 - MER3 DNA MER1_type -41 168 1 417 20 0 0 chr3 76194413 76194463 -141842695 + (TG)n Simple_repeat Simple_repeat 1 50 0 2004 136 0 0 chr3 76194474 76194746 -141842412 - AluSx SINE Alu -40 272 1 351 278 170 24 chr3 76196420 76196632 -141840526 + L2 LINE L2 2380 2622 -692 329 276 52 60 chr3 76196931 76197065 -141840093 + L2 LINE L2 3136 3268 -4 210 304 29 29 chr3 76197731 76197800 -141839358 - L2 LINE L2 0 3272 3204 377 333 33 16 chr3 76198763 76198946 -141838212 - MER117 DNA MER1_type -1 196 11 550 267 71 24 chr3 76199006 76199261 -141837897 - MLT1I LTR MaLR -142 267 1 401 284 14 7 chr3 76199516 76199657 -141837501 - MER103 DNA DNA -16 150 9 330 225 50 67 chr3 76199820 76199940 -141837218 + MIR SINE MIR 60 177 -85 316 313 89 0 chr3 76201502 76201681 -141835477 + MER117 DNA MER1_type 1 195 -2 434 286 52 19 chr3 76201686 76201840 -141835318 + MIR3 SINE MIR 16 174 -34 2217 123 3 0 chr3 76201845 76202147 -141835011 + AluSp SINE Alu 1 303 -10 353 254 59 8 chr3 76202240 76202358 -141834800 + MLT1H LTR MaLR 41 164 -385 2143 101 0 7 chr3 76202560 76202867 -141834291 - AluSq SINE Alu 0 305 1 286 138 0 0 chr3 76202873 76202934 -141834224 + MLT1H1 LTR MaLR 495 567 0 293 253 93 43 chr3 76202999 76203157 -141834001 - MLT1G1 LTR MaLR -259 336 171 2179 177 33 12 chr3 76203157 76203580 -141833578 + MSTB1 LTR MaLR 1 432 0 302 250 9 19 chr3 76203585 76203693 -141833465 - MLT1G1 LTR MaLR -473 122 16 326 314 47 78 chr3 76204476 76204731 -141832427 + MIR SINE MIR 1 247 -15 315 281 23 138 chr3 76204838 76205055 -141832103 + L2 LINE L2 3039 3230 -42 189 405 0 14 chr3 76205113 76205187 -141831971 + L2 LINE L2 2986 3058 -214 210 278 19 0 chr3 76206516 76206570 -141830588 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 22 0 0 0 chr3 76206964 76206986 -141830172 + AT_rich Low_complexity Low_complexity 1 22 0 230 306 0 14 chr3 76208037 76208109 -141829049 + L3 LINE CR1 1416 1486 -91 216 319 0 14 chr3 76209258 76209330 -141827828 + L3 LINE CR1 1416 1486 -91 507 218 34 92 chr3 76210112 76210215 -141826943 + MER112 DNA MER1_type 66 153 -107 2043 170 0 0 chr3 76210215 76210527 -141826631 + AluJb SINE Alu 1 312 0 507 218 34 92 chr3 76210527 76210629 -141826529 + MER112 DNA MER1_type 153 259 -1 284 305 17 0 chr3 76212672 76212790 -141824368 + L1MB7 LINE L1 5742 5861 -260 231 207 24 12 chr3 76212843 76212925 -141824233 + MER20B DNA MER1_type 662 744 -39 1042 153 39 0 chr3 76212939 76213142 -141824016 + L1MB7 LINE L1 5951 6161 -23 591 15 0 0 chr3 76213550 76213618 -141823540 + (CA)n Simple_repeat Simple_repeat 1 68 0 332 335 6 61 chr3 76213693 76213857 -141823301 + MER5A DNA MER1_type 4 158 -31 1305 232 102 18 chr3 76214761 76215247 -141821911 + MER39 LTR ERV1 10 702 -5 246 361 57 16 chr3 76215998 76216120 -141821038 + MIR SINE MIR 8 134 -128 346 271 76 31 chr3 76216239 76216376 -141820782 + MIR SINE MIR 26 171 -37 306 308 45 15 chr3 76216672 76216805 -141820353 - MER5A DNA MER1_type -18 171 35 292 292 31 10 chr3 76216721 76216817 -141820341 + MER5A DNA MER1_type 81 178 -11 * 951 233 19 42 chr3 76217675 76217937 -141819221 + MIR SINE MIR 5 260 -2 355 331 121 12 chr3 76217953 76218119 -141819039 - MIR SINE MIR -74 188 5 22 35 0 0 chr3 76218907 76218936 -141818222 + AT_rich Low_complexity Low_complexity 1 29 0 1816 162 0 0 chr3 76219017 76219289 -141817869 - AluSx SINE Alu -8 304 33 187 304 87 22 chr3 76219774 76219866 -141817292 - MER5A DNA MER1_type -56 133 36 22 0 0 0 chr3 76219898 76219920 -141817238 + AT_rich Low_complexity Low_complexity 1 22 0 239 48 0 48 chr3 76220459 76220501 -141816657 + (CAAA)n Simple_repeat Simple_repeat 3 42 0 238 350 125 12 chr3 76221080 76221240 -141815918 - L3 LINE CR1 -11 1566 1389 257 333 50 10 chr3 76221321 76221420 -141815738 - L2 LINE L2 -3 3310 3208 437 282 138 84 chr3 76221502 76221967 -141815191 - L2 LINE L2 -9 3304 2815 1089 204 9 43 chr3 76222284 76222514 -141814644 - MER58A DNA MER1_type 0 224 3 362 311 34 14 chr3 76222724 76222872 -141814286 + MLT1L LTR MaLR 369 519 -96 1894 115 0 11 chr3 76222890 76223151 -141814007 + AluSx SINE Alu 1 258 -54 298 361 101 34 chr3 76225392 76225688 -141811470 - L3 LINE CR1 -200 1377 1062 220 233 0 0 chr3 76225710 76225753 -141811405 + L2 LINE L2 3262 3304 -9 284 296 37 19 chr3 76226575 76226683 -141810475 + MIR SINE MIR 123 232 -30 840 259 17 17 chr3 76228640 76228872 -141808286 + MIR SINE MIR 31 262 0 330 297 9 9 chr3 76228946 76229057 -141808101 - MIR SINE MIR -62 146 36 573 177 152 30 chr3 76230797 76230961 -141806197 - MLT1K LTR MaLR -10 578 395 234 339 31 62 chr3 76231599 76231729 -141805429 - L2 LINE L2 -2 3270 3145 22 0 0 0 chr3 76232676 76232698 -141804460 + AT_rich Low_complexity Low_complexity 1 22 0 190 162 0 27 chr3 76233550 76233587 -141803571 + MIR SINE MIR 112 147 -61 390 384 99 24 chr3 76233937 76234270 -141802888 + L2 LINE L2 2915 3272 0 318 106 0 0 chr3 76234273 76234320 -141802838 + (TGAA)n Simple_repeat Simple_repeat 1 47 0 24 0 0 0 chr3 76235576 76235600 -141801558 + AT_rich Low_complexity Low_complexity 1 24 0 293 161 47 0 chr3 76235618 76235767 -141801391 + (TA)n Simple_repeat Simple_repeat 2 157 0 53 0 0 0 chr3 76235767 76235820 -141801338 + AT_rich Low_complexity Low_complexity 1 53 0 221 167 36 12 chr3 76235833 76235917 -141801241 + (TA)n Simple_repeat Simple_repeat 1 86 0 706 129 22 11 chr3 76235949 76236127 -141801031 + (TA)n Simple_repeat Simple_repeat 1 180 0 35 54 0 0 chr3 76236131 76236187 -141800971 + AT_rich Low_complexity Low_complexity 1 56 0 333 68 0 0 chr3 76236226 76236270 -141800888 + (TG)n Simple_repeat Simple_repeat 1 44 0 387 0 0 0 chr3 76236282 76236325 -141800833 + (TA)n Simple_repeat Simple_repeat 1 43 0 647 175 9 8 chr3 76236573 76236814 -141800344 + (TA)n Simple_repeat Simple_repeat 1 241 0 474 237 0 0 chr3 76236851 76236969 -141800189 + (TA)n Simple_repeat Simple_repeat 2 119 0 240 306 14 0 chr3 76237448 76237520 -141799638 + CT-rich Low_complexity Low_complexity 4 76 0 330 324 0 7 chr3 76237577 76237722 -141799436 + MER117 DNA MER1_type 7 150 -47 250 333 48 0 chr3 76238683 76238767 -141798391 + L2 LINE L2 3184 3271 -1 928 312 19 21 chr3 76238885 76239263 -141797895 + LTR16C LTR ERVL 115 491 0 1400 186 48 33 chr3 76239813 76240147 -141797011 - MER44D DNA MER2_type 0 609 1 1625 189 38 0 chr3 76240230 76240521 -141796637 + AluJb SINE Alu 2 303 -9 234 195 0 0 chr3 76240916 76240957 -141796201 - U2 snRNA snRNA -147 41 1 481 179 0 86 chr3 76242661 76242812 -141794346 - MLT1A1 LTR MaLR -66 299 162 24 0 0 0 chr3 76245129 76245153 -141792005 + AT_rich Low_complexity Low_complexity 1 24 0 602 255 22 114 chr3 76245342 76245613 -141791545 + MIR SINE MIR 15 260 -2 317 290 55 41 chr3 76246335 76246480 -141790678 + MIR3 SINE MIR 27 173 -35 195 42 0 0 chr3 76247186 76247210 -141789948 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 464 243 171 7 chr3 76247472 76247612 -141789546 - MIR SINE MIR -70 192 30 27 29 0 0 chr3 76248075 76248109 -141789049 + AT_rich Low_complexity Low_complexity 1 34 0 553 296 62 33 chr3 76248122 76248365 -141788793 - MIR SINE MIR 0 262 13 504 223 27 87 chr3 76248473 76248657 -141788501 - L2 LINE L2 -50 3263 3091 431 323 103 70 chr3 76249854 76250468 -141786690 - L2 LINE L2 -5 3267 2621 355 306 140 6 chr3 76251764 76251921 -141785237 - MIR SINE MIR -62 200 23 346 294 7 7 chr3 76254673 76254809 -141782349 - MER103 DNA DNA -21 145 10 294 115 0 0 chr3 76255133 76255185 -141781973 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 192 289 0 0 chr3 76255619 76255671 -141781487 - L3 LINE CR1 -1096 481 430 272 254 9 36 chr3 76255707 76255817 -141781341 + T-rich Low_complexity Low_complexity 1 107 0 5995 155 64 5 chr3 76256040 76257201 -141779957 + Tigger3b DNA MER2_type 2 1230 -1 286 330 23 11 chr3 76257257 76257345 -141779813 + MER91A DNA MER1_type 1 89 -107 246 330 58 44 chr3 76259835 76260041 -141777117 + MIR SINE MIR 3 211 -51 237 159 0 0 chr3 76260108 76260152 -141777006 + CT-rich Low_complexity Low_complexity 1 44 0 2145 100 0 39 chr3 76260303 76260636 -141776522 - AluY SINE Alu 0 311 1 218 171 29 0 chr3 76261618 76261653 -141775505 - L2 LINE L2 -33 3239 3204 3058 109 5 2 chr3 76261733 76262163 -141774995 + L1P3 LINE L1 1 431 -6030 703 306 137 55 chr3 76262989 76263990 -141773168 + L2 LINE L2 2186 3262 -10 192 158 0 0 chr3 76264018 76264056 -141773102 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 210 289 174 0 chr3 76264197 76264318 -141772840 + MIR SINE MIR 102 243 -19 196 260 20 0 chr3 76264835 76264885 -141772273 - MIR3 SINE MIR -7 201 151 323 279 13 0 chr3 76264979 76265058 -141772100 - MER117 DNA MER1_type -117 80 1 1591 225 2 65 chr3 76266111 76266525 -141770633 - MLT1B LTR MaLR 0 390 3 481 293 79 26 chr3 76266772 76266930 -141770228 - MIR SINE MIR -10 252 104 2215 106 7 0 chr3 76266930 76267222 -141769936 - AluSc SINE Alu -15 294 1 631 213 47 0 chr3 76267225 76267352 -141769806 - AluJo/FLAM SINE Alu -169 133 1 481 293 79 26 chr3 76267352 76267418 -141769740 - MIR SINE MIR -159 103 12 1552 340 96 21 chr3 76267424 76268453 -141768705 - L2 LINE L2 -337 2977 1872 375 280 132 22 chr3 76268434 76268616 -141768542 - MIR SINE MIR -34 228 27 * 201 316 0 40 chr3 76268766 76268842 -141768316 + MIR3 SINE MIR 115 187 -21 230 172 31 47 chr3 76268936 76269000 -141768158 - L2 LINE L2 0 3313 3251 195 254 18 0 chr3 76268990 76269045 -141768113 + L2 LINE L2 2927 2982 -290 * 359 226 44 15 chr3 76270303 76270440 -141766718 + (CAGAGA)n Simple_repeat Simple_repeat 3 143 0 422 309 33 20 chr3 76272453 76272605 -141764553 + MIR SINE MIR 89 242 -20 233 219 125 0 chr3 76272631 76272695 -141764463 - MER116 DNA Mariner -8 72 1 189 0 0 0 chr3 76273030 76273051 -141764107 + (GAAAA)n Simple_repeat Simple_repeat 5 25 0 266 321 38 15 chr3 76273186 76273317 -141763841 - L2 LINE L2 -381 2933 2800 186 268 24 0 chr3 76273510 76273551 -141763607 - MIR SINE MIR -58 150 109 246 213 0 0 chr3 76274421 76274468 -141762690 + L1MD2 LINE L1 5243 5289 -857 1463 143 23 39 chr3 76274479 76274738 -141762420 + L1PA16 LINE L1 5912 6166 0 2576 200 51 47 chr3 76274773 76275069 -141762089 + L1MD2 LINE L1 5283 5576 -783 2070 125 0 47 chr3 76275069 76275390 -141761768 - AluSc SINE Alu -3 306 1 2576 200 51 47 chr3 76275390 76275757 -141761401 + L1MD2 LINE L1 5576 5949 -410 1463 212 13 13 chr3 76275774 76276081 -141761077 + L1PA15 LINE L1 1286 1592 -5195 10822 198 10 0 chr3 76276081 76279096 -141758062 + L1PA15 LINE L1 3780 6816 0 872 232 149 72 chr3 76279146 76279521 -141757637 + L1MD2 LINE L1 5937 6340 -19 406 326 39 43 chr3 76279553 76279811 -141757347 - MIR SINE MIR 0 262 6 185 267 0 17 chr3 76280359 76280419 -141756739 + L2 LINE L2 2055 2113 -1201 1853 150 13 13 chr3 76280664 76280964 -141756194 + AluJo SINE Alu 1 300 -12 333 291 0 0 chr3 76282539 76282618 -141754540 - L2 LINE L2 0 3313 3235 258 191 0 0 chr3 76282705 76282747 -141754411 - L2 LINE L2 -262 3051 3010 698 292 20 24 chr3 76282773 76283023 -141754135 - MIR SINE MIR -11 251 3 21 57 0 0 chr3 76283260 76283295 -141753863 + AT_rich Low_complexity Low_complexity 1 35 0 731 262 119 0 chr3 76283396 76283598 -141753560 - MIR SINE MIR -11 251 26 2385 209 25 46 chr3 76284910 76285546 -141751612 - L1MA9 LINE L1 -30 6282 5660 620 180 18 18 chr3 76287827 76287994 -141749164 + (TCCA)n Simple_repeat Simple_repeat 1 167 0 2833 93 11 16 chr3 76288674 76289051 -141748107 + THE1C LTR MaLR 1 375 0 357 187 16 119 chr3 76289337 76289507 -141747651 + MIR SINE MIR 101 249 -13 488 230 14 65 chr3 76289838 76289977 -141747181 + MER94 DNA DNA 1 132 -2 372 318 67 11 chr3 76290042 76290221 -141746937 + MIR SINE MIR 47 235 -27 23 0 0 0 chr3 76291327 76291350 -141745808 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr3 76291916 76291962 -141745196 + AT_rich Low_complexity Low_complexity 1 46 0 382 324 116 19 chr3 76292468 76292684 -141744474 - MIR SINE MIR -13 249 13 210 257 19 105 chr3 76292744 76292849 -141744309 + MIR SINE MIR 21 116 -92 1480 265 24 27 chr3 76293368 76293742 -141743416 + LTR16C LTR ERVL 117 489 -2 1882 97 0 30 chr3 76293991 76294258 -141742900 + AluSx SINE Alu 54 312 0 1447 188 77 32 chr3 76294397 76294593 -141742565 - L1ME LINE L1 -439 5682 5496 2518 82 0 0 chr3 76294593 76294899 -141742259 - AluSg SINE Alu -4 306 1 1447 188 77 32 chr3 76294899 76295221 -141741937 - L1ME LINE L1 -625 5496 5142 532 165 50 110 chr3 76295221 76295421 -141741737 - MLT1E2 LTR MaLR -438 188 1 212 313 48 0 chr3 76295734 76295817 -141741341 + L2 LINE L2 1770 1856 -1458 2310 67 0 11 chr3 76295819 76296128 -141741030 - AluSg SINE Alu 0 306 1 3877 173 66 0 chr3 76296144 76296897 -141740261 - L1MB7 LINE L1 0 6184 5382 567 287 102 33 chr3 76296934 76297305 -141739853 + L2 LINE L2 1949 3313 0 496 214 19 0 chr3 76297362 76297465 -141739693 + MER103 DNA DNA 4 108 -58 314 341 44 48 chr3 76297542 76297791 -141739367 + L3 LINE CR1 231 478 -1099 1559 179 14 21 chr3 76298210 76298489 -141738669 + AluJo SINE Alu 3 279 -33 313 252 17 0 chr3 76298500 76298619 -141738539 + GA-rich Low_complexity Low_complexity 2 122 0 396 118 132 13 chr3 76298715 76298791 -141738367 + MER5A DNA MER1_type 1 85 -104 21 36 0 0 chr3 76298982 76299010 -141738148 + AT_rich Low_complexity Low_complexity 1 28 0 548 246 110 11 chr3 76299032 76299223 -141737935 - MIR SINE MIR -16 246 37 360 283 0 10 chr3 76299269 76299368 -141737790 + GA-rich Low_complexity Low_complexity 2 99 0 215 363 141 0 chr3 76300231 76300366 -141736792 + MIR SINE MIR 23 176 -86 1956 68 140 0 chr3 76300372 76300636 -141736522 - AluY SINE Alu 0 301 1 416 252 37 7 chr3 76302039 76302174 -141734984 + MER117 DNA MER1_type 59 197 0 212 311 22 33 chr3 76302602 76302692 -141734466 - MER5A DNA MER1_type -66 123 35 880 244 118 59 chr3 76303994 76304383 -141732775 + L3 LINE CR1 1067 1478 -99 254 284 0 14 chr3 76304868 76304942 -141732216 + Charlie8 DNA MER1_type 2345 2417 0 312 87 0 0 chr3 76305092 76305138 -141732020 - L1PA8 LINE L1 -2 6170 6125 2070 162 46 34 chr3 76307086 76307628 -141729530 - MLT2A1 LTR ERVL 0 554 1 1842 139 27 20 chr3 76307661 76307955 -141729203 - AluJo SINE Alu -16 296 1 1130 186 115 4 chr3 76309307 76309586 -141727572 + MER33 DNA MER1_type 7 316 -8 22 35 0 0 chr3 76309951 76309980 -141727178 + AT_rich Low_complexity Low_complexity 1 29 0 202 28 28 28 chr3 76310390 76310426 -141726732 + (CA)n Simple_repeat Simple_repeat 2 37 0 479 283 49 2 chr3 76311501 76311648 -141725510 - MIR SINE MIR -76 132 9 4180 126 55 6 chr3 76312446 76313137 -141724021 + MER4A-int LTR ERV1 5872 6596 -2 558 118 54 11 chr3 76313144 76313237 -141723921 + MER4A LTR ERV1 1 97 -567 * 1622 143 168 80 chr3 76313234 76313585 -141723573 + MER4A LTR ERV1 257 638 -26 1781 122 0 0 chr3 76314031 76314277 -141722881 + AluSx SINE Alu 49 294 -18 1944 141 6 13 chr3 76314281 76314593 -141722565 + AluSg SINE Alu 1 310 0 1863 208 89 40 chr3 76315442 76315923 -141721235 + MLT1D LTR MaLR 1 505 0 311 310 103 7 chr3 76316454 76316599 -141720559 + MIR3 SINE MIR 47 205 -3 21 0 0 0 chr3 76317945 76317966 -141719192 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 76318049 76318070 -141719088 + AT_rich Low_complexity Low_complexity 1 21 0 2862 199 43 35 chr3 76318458 76319087 -141718071 + LTR27 LTR ERV1 3 636 0 2010 160 22 6 chr3 76320152 76320508 -141716650 - L1MB7 LINE L1 -9 6175 5814 5365 171 29 22 chr3 76320508 76321652 -141715506 - L1MA9 LINE L1 -3 6309 5157 2461 185 27 47 chr3 76321645 76322202 -141714956 - L1MB7 LINE L1 -355 5823 5278 * 321 304 64 41 chr3 76322206 76322377 -141714781 - MIR SINE MIR -56 206 32 2003 129 3 3 chr3 76322699 76322994 -141714164 + AluSq SINE Alu 1 295 -18 381 194 129 32 chr3 76323557 76323650 -141713508 + MER58A DNA MER1_type 1 102 -5 * 475 108 0 0 chr3 76323647 76323712 -141713446 + MER58A DNA MER1_type 160 224 0 2014 123 3 41 chr3 76323744 76324062 -141713096 - AluSx SINE Alu -6 306 1 196 246 82 75 chr3 76324357 76324491 -141712667 - MIR SINE MIR -45 217 83 241 360 75 20 chr3 76324635 76324782 -141712376 + MIR SINE MIR 108 262 0 325 319 12 38 chr3 76324884 76325112 -141712046 - Charlie8 DNA MER1_type -1002 1415 115 393 102 0 0 chr3 76325138 76325197 -141711961 + (CA)n Simple_repeat Simple_repeat 2 60 0 2170 143 5 46 chr3 76325236 76325547 -141711611 - MER46B DNA MER2_type -2499 232 62 2517 59 0 3 chr3 76325547 76325851 -141711307 + AluY SINE Alu 1 303 -8 2170 143 5 46 chr3 76325851 76325910 -141711248 - MER46B DNA MER2_type -2669 62 2 448 383 72 11 chr3 76326028 76326305 -141710853 - L2 LINE L2 -7 3265 2972 327 171 109 4 chr3 76326314 76326456 -141710702 - MER3 DNA MER1_type 0 209 8 800 283 129 45 chr3 76327339 76327759 -141709399 - L2 LINE L2 0 3313 2859 308 305 155 40 chr3 76327806 76328032 -141709126 - L2 LINE L2 -574 2740 2489 381 292 159 0 chr3 76328244 76328357 -141708801 - L2 LINE L2 -3 3269 3139 1216 191 19 0 chr3 76328398 76328613 -141708545 - MER20 DNA MER1_type 0 219 1 236 283 51 71 chr3 76329196 76329350 -141707808 - MIR SINE MIR -8 254 34 1550 160 82 11 chr3 76329350 76329631 -141707527 - AluJb SINE Alu -11 301 1 236 283 51 71 chr3 76329631 76329664 -141707494 - MIR SINE MIR -228 34 2 350 213 160 0 chr3 76329680 76329774 -141707384 - MER117 DNA MER1_type -81 116 8 360 264 95 7 chr3 76332740 76332888 -141704270 + MER103 DNA DNA 1 161 -5 1903 179 92 16 chr3 76334485 76334853 -141702305 + MSTD LTR MaLR 1 396 0 351 305 59 0 chr3 76336623 76336741 -141700417 + L2 LINE L2 3188 3312 -1 2631 160 21 5 chr3 76336818 76337243 -141699915 + MSTB1 LTR MaLR 1 432 0 183 80 0 0 chr3 76338574 76338599 -141698559 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3044 184 60 93 chr3 76339191 76339972 -141697186 + MER63C DNA MER1_type 1 703 -357 2230 152 33 28 chr3 76339972 76340334 -141696824 + THE1B LTR MaLR 1 364 0 3044 184 60 93 chr3 76340334 76340555 -141696603 + MER63C DNA MER1_type 703 930 0 545 318 23 18 chr3 76342889 76343106 -141694052 - MIR SINE MIR -17 245 28 210 293 155 26 chr3 76343210 76343442 -141693716 - L2 LINE L2 -170 3102 2841 310 299 84 84 chr3 76346386 76346721 -141690437 - MLT1L LTR MaLR -86 529 195 266 246 0 14 chr3 76346804 76346873 -141690285 - MLT1L LTR MaLR -542 73 6 206 178 22 0 chr3 76347366 76347411 -141689747 + (TA)n Simple_repeat Simple_repeat 2 47 0 597 107 0 0 chr3 76347411 76347495 -141689663 - L1MB3 LINE L1 -9 6174 6091 219 69 0 0 chr3 76347638 76347667 -141689491 + (T)n Simple_repeat Simple_repeat 1 29 0 257 216 20 0 chr3 76348828 76348879 -141688279 + L2 LINE L2 3224 3275 -38 849 194 30 6 chr3 76349069 76349234 -141687924 + MER5A DNA MER1_type 19 187 -2 387 235 10 20 chr3 76349735 76349833 -141687325 + MER94 DNA DNA 2 98 -36 1072 192 9 36 chr3 76349846 76350070 -141687088 + MER20 DNA MER1_type 1 218 -1 275 250 37 102 chr3 76350180 76350288 -141686870 + L2 LINE L2 3200 3300 -13 209 345 148 15 chr3 76350590 76350793 -141686365 - L2 LINE L2 -825 2489 2260 373 254 90 22 chr3 76351901 76352035 -141685123 - MER117 DNA MER1_type -54 143 1 255 311 0 0 chr3 76352046 76352120 -141685038 + MIR SINE MIR 76 149 -59 193 299 10 41 chr3 76352457 76352554 -141684604 + MER5C DNA MER1_type 5 98 -226 303 28 0 0 chr3 76352713 76352749 -141684409 + (CA)n Simple_repeat Simple_repeat 2 37 0 240 309 65 41 chr3 76353271 76353394 -141683764 + MIR SINE MIR 99 224 -38 493 267 176 5 chr3 76353430 76353640 -141683518 + MIR SINE MIR 4 249 -13 2299 70 10 27 chr3 76353821 76354121 -141683037 + AluY SINE Alu 2 296 -15 609 299 47 60 chr3 76354462 76354760 -141682398 + MLT1K LTR MaLR 2 295 -293 32 0 0 0 chr3 76355539 76355571 -141681587 + AT_rich Low_complexity Low_complexity 1 32 0 303 323 73 11 chr3 76355605 76355741 -141681417 + MIR SINE MIR 21 164 -69 610 343 101 20 chr3 76356940 76357554 -141679604 + L2 LINE L2 2497 3184 -129 942 310 68 10 chr3 76359013 76359092 -141678066 - MLT1I LTR MaLR -3 406 333 2639 102 11 6 chr3 76359092 76359445 -141677713 - THE1A LTR MaLR 0 355 1 942 310 68 10 chr3 76359445 76359749 -141677409 - MLT1I LTR MaLR -76 333 1 439 286 36 18 chr3 76359749 76359861 -141677297 + MER91A DNA MER1_type 44 157 -39 223 341 106 8 chr3 76359958 76360081 -141677077 - L2 LINE L2 -1 3271 3137 928 283 63 76 chr3 76360540 76360985 -141676173 + LTR16C LTR ERVL 51 489 -2 2599 121 28 3 chr3 76361174 76361529 -141675629 + THE1B LTR MaLR 1 364 0 202 201 2 94 chr3 76362653 76362722 -141674436 + MIR SINE MIR 42 104 -113 860 256 98 81 chr3 76363600 76363860 -141673298 - L1MC4 LINE L1 -169 7873 7619 198 0 0 0 chr3 76363860 76363882 -141673276 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2121 88 0 11 chr3 76363884 76364169 -141672989 - AluSx SINE Alu -30 282 1 860 256 98 81 chr3 76364169 76364436 -141672722 - L1MC4 LINE L1 -423 7619 7334 * 1673 202 101 9 chr3 76364427 76364863 -141672295 - L1MC4 LINE L1 -1111 6931 6456 2158 83 59 3 chr3 76365079 76365368 -141671790 + AluSg SINE Alu 1 305 -5 303 272 132 18 chr3 76366600 76366714 -141670444 + MIR SINE MIR 66 192 -70 430 276 69 23 chr3 76366774 76366948 -141670210 - MIR SINE MIR -13 249 68 679 304 89 38 chr3 76367055 76367523 -141669635 - L1M4 LINE L1 -2417 3729 3221 2434 73 0 3 chr3 76367523 76367825 -141669333 + AluY SINE Alu 1 301 -10 679 304 89 38 chr3 76367825 76367964 -141669194 - L1M4 LINE L1 -2925 3221 3091 191 266 228 0 chr3 76368411 76368490 -141668668 - MIR SINE MIR -4 258 162 329 296 230 0 chr3 76368560 76368712 -141668446 + L3 LINE CR1 1305 1491 -86 388 293 21 58 chr3 76368832 76369019 -141668139 + MIR3 SINE MIR 8 186 -22 182 62 31 0 chr3 76369542 76369574 -141667584 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 313 300 61 74 chr3 76370193 76370359 -141666799 + MIR SINE MIR 13 177 -85 5238 140 20 2 chr3 76370359 76371235 -141665923 + L1MC1 LINE L1 5433 6324 -9 313 300 61 74 chr3 76371235 76371298 -141665860 + MIR SINE MIR 177 239 -23 619 306 47 17 chr3 76372028 76372260 -141664898 + MIR SINE MIR 4 242 -20 2095 135 0 7 chr3 76374219 76374515 -141662643 - AluSx SINE Alu -18 294 1 11629 197 36 17 chr3 76375216 76379083 -141658075 + L1MB3 LINE L1 28 3820 -2599 240 59 0 0 chr3 76379083 76379117 -141658041 + (CA)n Simple_repeat Simple_repeat 2 35 0 11629 197 36 17 chr3 76379117 76379369 -141657789 + L1MB3 LINE L1 3820 4066 -2353 2144 181 56 7 chr3 76379369 76379777 -141657381 - MSTA LTR MaLR 0 428 1 11629 197 36 17 chr3 76379777 76381722 -141655436 + L1MB3 LINE L1 4066 6419 0 509 338 75 26 chr3 76381910 76382339 -141654819 - LTR16A LTR ERVL 0 450 1 561 248 152 30 chr3 76382656 76382854 -141654304 - MIR SINE MIR -11 251 30 245 250 0 0 chr3 76383125 76383193 -141653965 + Charlie8 DNA MER1_type 84 151 -2266 232 345 103 0 chr3 76384066 76384182 -141652976 - L2 LINE L2 -5 3267 3140 2207 127 0 6 chr3 76384255 76384569 -141652589 - AluSx SINE Alu 0 312 1 338 331 77 8 chr3 76384817 76385019 -141652139 - MIR SINE MIR -41 167 4 673 274 22 91 chr3 76385626 76385900 -141651258 - MIR SINE MIR -6 256 2 1744 159 68 12 chr3 76386066 76386392 -141650766 - MER2 DNA MER2_type 0 344 1 315 320 27 14 chr3 76387780 76387941 -141649217 + MIR SINE MIR 4 171 -72 1800 171 0 9 chr3 76388230 76388545 -141648613 + AluSx SINE Alu 1 312 0 405 228 24 24 chr3 76389535 76389658 -141647500 + AluJb SINE Alu 177 299 -13 1574 208 17 11 chr3 76391256 76391607 -141645551 + MLT1A1 LTR MaLR 1 353 -12 263 167 31 21 chr3 76391610 76391706 -141645452 + (TCTA)n Simple_repeat Simple_repeat 4 100 0 192 297 16 0 chr3 76391724 76391788 -141645370 - MIR SINE MIR -34 228 164 185 291 0 36 chr3 76391847 76391902 -141645256 - MIR SINE MIR -129 79 27 1669 158 67 25 chr3 76391984 76392344 -141644814 - THE1C LTR MaLR 0 375 1 1942 190 40 55 chr3 76392424 76392898 -141644260 - MLT1C LTR MaLR 0 467 1 505 300 58 22 chr3 76393047 76393270 -141643888 - MLT1K LTR MaLR -34 554 324 456 271 110 66 chr3 76393330 76393603 -141643555 - MLT1I LTR MaLR -27 382 98 696 294 121 0 chr3 76394521 76394752 -141642406 + MIR SINE MIR 4 262 0 248 53 26 0 chr3 76394753 76394791 -141642367 + (CAT)n Simple_repeat Simple_repeat 3 41 0 439 205 78 18 chr3 76394874 76395011 -141642147 - MIR SINE MIR -11 251 106 1175 134 84 10 chr3 76395962 76396164 -141640994 - AluJo SINE Alu -10 302 86 234 296 84 42 chr3 76396284 76396426 -141640732 - MLT1I LTR MaLR -191 218 71 315 0 0 0 chr3 76397179 76397214 -141639944 + (CA)n Simple_repeat Simple_repeat 2 36 0 454 300 130 10 chr3 76398418 76398618 -141638540 + MIR SINE MIR 5 228 -34 233 269 39 51 chr3 76398692 76398770 -141638388 + L2 LINE L2 3186 3262 -10 382 261 9 18 chr3 76399354 76399465 -141637693 + MER20B DNA MER1_type 43 152 -631 297 218 24 118 chr3 76399664 76399834 -141637324 - L2 LINE L2 -107 3206 3053 1173 155 36 0 chr3 76399834 76400027 -141637131 + AluJb SINE Alu 95 294 -18 189 154 0 0 chr3 76400213 76400252 -141636906 + (TGGA)n Simple_repeat Simple_repeat 3 41 0 233 358 0 11 chr3 76401672 76401767 -141635391 - MIR SINE MIR -1 261 168 3712 175 10 0 chr3 76401968 76402739 -141634419 - L1 LINE L1 -1664 4482 3704 * 6094 140 9 4 chr3 76402726 76404349 -141632809 + L1PB1 LINE L1 4521 6151 0 26 0 0 0 chr3 76404380 76404406 -141632752 + AT_rich Low_complexity Low_complexity 1 26 0 409 305 161 50 chr3 76404877 76405313 -141631845 + L2 LINE L2 2044 2527 -787 1019 235 14 0 chr3 76405431 76405644 -141631514 - MER58A DNA MER1_type 0 224 9 283 295 82 8 chr3 76405816 76405938 -141631220 - MIR SINE MIR -59 149 19 1389 179 36 102 chr3 76406013 76406404 -141630754 - MLT1A1 LTR MaLR 0 365 1 22 35 0 0 chr3 76406657 76406686 -141630472 + AT_rich Low_complexity Low_complexity 1 29 0 291 297 0 0 chr3 76408171 76408245 -141628913 + CT-rich Low_complexity Low_complexity 3 76 0 721 133 30 15 chr3 76408563 76408698 -141628460 - AluJb SINE Alu 0 312 176 400 270 145 0 chr3 76409862 76410014 -141627144 - MIR SINE MIR -17 245 72 1468 85 0 5 chr3 76410214 76410425 -141626733 - L1P5 LINE L1 -404 5747 5538 303 28 0 0 chr3 76411624 76411660 -141625498 + (TG)n Simple_repeat Simple_repeat 2 37 0 226 317 164 19 chr3 76411887 76411991 -141625167 - L2 LINE L2 -20 3252 3134 1013 195 14 23 chr3 76413459 76413680 -141623478 - MER20 DNA MER1_type 0 219 1 1381 223 156 12 chr3 76416179 76416583 -141620575 - MLT1C LTR MaLR 0 467 6 195 352 28 9 chr3 76417301 76417409 -141619749 - L3 LINE CR1 -14 1563 1454 1766 120 0 33 chr3 76417497 76417773 -141619385 + L1MB5 LINE L1 5886 6152 -22 267 240 141 66 chr3 76418144 76418265 -141618893 + MIR3 SINE MIR 65 194 -14 233 382 92 34 chr3 76418279 76418690 -141618468 - L3 LINE CR1 -561 1016 582 232 220 0 17 chr3 76418942 76419001 -141618157 + LTR66 LTR ERVL 382 439 -171 235 371 78 37 chr3 76419560 76419854 -141617304 - L3 LINE CR1 -690 887 582 227 160 140 0 chr3 76420106 76420156 -141617002 + LTR66 LTR ERVL 382 438 -172 * 228 220 0 0 chr3 76420117 76420167 -141616991 - LTR66 LTR ERVL -163 447 398 314 253 23 11 chr3 76420167 76420254 -141616904 - L1MC4 LINE L1 -1339 6703 6616 273 325 77 0 chr3 76420429 76420546 -141616612 + MIR SINE MIR 20 145 -63 2437 58 7 0 chr3 76420670 76420964 -141616194 - AluY SINE Alu -15 296 1 279 308 86 0 chr3 76421082 76421199 -141615959 - MIR SINE MIR -62 146 20 526 247 98 61 chr3 76421269 76421548 -141615610 - MER34 LTR ERV1 -225 482 1 2820 79 27 0 chr3 76422106 76422473 -141614685 + MER51B LTR ERV1 1 377 0 602 100 0 0 chr3 76422876 76422956 -141614202 - MADE1 DNA Mariner 0 80 1 183 244 111 67 chr3 76423768 76423858 -141613300 - L2 LINE L2 -6 3266 3173 194 364 0 13 chr3 76424000 76424077 -141613081 + L2 LINE L2 2564 2639 -675 2099 86 39 15 chr3 76424122 76424515 -141612643 - LTR7 LTR ERV1 0 450 1 245 282 24 35 chr3 76424562 76424647 -141612511 - Charlie8 DNA MER1_type -2155 262 179 217 326 31 20 chr3 76425075 76425173 -141611985 + MIR SINE MIR 85 183 -79 390 192 58 70 chr3 76425313 76425469 -141611689 - L1ME4a LINE L1 0 6121 5968 342 204 51 51 chr3 76425647 76425745 -141611413 + MIR SINE MIR 164 261 -1 242 309 0 0 chr3 76425978 76426033 -141611125 + C-rich Low_complexity Low_complexity 3 57 0 194 218 55 0 chr3 76428094 76428149 -141609009 - MIR SINE MIR -119 143 86 186 250 36 0 chr3 76428997 76429053 -141608105 - MIR SINE MIR -119 143 86 2155 138 0 0 chr3 76430284 76430581 -141606577 + AluSx SINE Alu 1 297 -15 318 333 36 31 chr3 76430919 76431111 -141606047 - MER117 DNA MER1_type -4 193 1 244 312 106 42 chr3 76431230 76431467 -141605691 - L2 LINE L2 -190 3123 2872 1380 145 0 19 chr3 76432031 76432245 -141604913 - AluJo SINE Alu -17 295 86 2134 113 7 0 chr3 76432374 76432658 -141604500 - AluSx SINE Alu -17 295 10 519 238 148 57 chr3 76432692 76432902 -141604256 - MIR SINE MIR -19 243 15 396 268 24 0 chr3 76432981 76433104 -141604054 + MIR SINE MIR 116 241 -21 248 308 34 8 chr3 76433122 76433239 -141603919 + MIR SINE MIR 111 230 -32 201 250 231 9 chr3 76434232 76434340 -141602818 + MIR3 SINE MIR 24 155 -53 293 333 37 0 chr3 76434638 76434746 -141602412 - L2 LINE L2 0 3272 3161 384 290 65 69 chr3 76435077 76435294 -141601864 - MIR SINE MIR 0 262 47 775 211 135 55 chr3 76436175 76436412 -141600746 - MLT1K LTR MaLR -23 565 310 904 241 122 82 chr3 76437153 76437605 -141599553 - MLT1K LTR MaLR -3 473 4 262 254 15 0 chr3 76437722 76437789 -141599369 - L2 LINE L2 -213 3059 2992 398 284 30 30 chr3 76437872 76438006 -141599152 - L2 LINE L2 0 3272 3139 312 27 0 0 chr3 76438217 76438254 -141598904 + (GA)n Simple_repeat Simple_repeat 2 38 0 243 0 0 0 chr3 76439851 76439878 -141597280 + (A)n Simple_repeat Simple_repeat 1 27 0 183 274 27 0 chr3 76440031 76440104 -141597054 - L2 LINE L2 -4 3268 3194 182 259 99 15 chr3 76440251 76440382 -141596776 - L2 LINE L2 -290 2982 2841 239 337 0 0 chr3 76440612 76440707 -141596451 - MIR3 SINE MIR -5 203 109 577 273 91 12 chr3 76440878 76441120 -141596038 + MIR SINE MIR 1 261 -1 381 22 0 0 chr3 76441231 76441277 -141595881 + (TG)n Simple_repeat Simple_repeat 2 47 0 440 309 106 5 chr3 76441500 76441707 -141595451 + MIR SINE MIR 32 259 -3 201 317 89 30 chr3 76442684 76442785 -141594373 - L2 LINE L2 -11 3261 3155 873 228 96 92 chr3 76443011 76443141 -141594017 + MER113 DNA MER1_type? 4 132 -389 2108 118 0 29 chr3 76443141 76443447 -141593711 + AluSx SINE Alu 2 298 -14 873 228 96 92 chr3 76443447 76443515 -141593643 + MER113 DNA MER1_type? 132 198 -323 2649 98 83 2 chr3 76443515 76443911 -141593247 + MSTA LTR MaLR 1 428 0 873 228 96 92 chr3 76443911 76444220 -141592938 + MER113 DNA MER1_type? 198 514 -7 326 318 58 50 chr3 76444272 76444549 -141592609 - L2 LINE L2 -483 2831 2553 919 177 61 11 chr3 76444991 76445172 -141591986 + MER20 DNA MER1_type 30 219 0 2256 109 0 0 chr3 76445268 76445570 -141591588 - AluSc SINE Alu -7 302 1 592 107 0 12 chr3 76446506 76446590 -141590568 + AluS SINE Alu 2 84 -229 25 90 0 0 chr3 76447722 76447789 -141589369 + AT_rich Low_complexity Low_complexity 1 67 0 1111 214 95 52 chr3 76447898 76448244 -141588914 - MLT1A2 LTR MaLR -13 361 1 971 222 61 5 chr3 76450073 76450285 -141586873 + MER58A DNA MER1_type 1 224 0 268 261 130 0 chr3 76450323 76450415 -141586743 + L2 LINE L2 3191 3294 -19 1008 290 157 20 chr3 76450578 76451633 -141585525 - L2 LINE L2 -5 3308 2091 342 211 118 66 chr3 76451618 76451770 -141585388 - L2 LINE L2 -327 2986 2827 * 611 215 136 53 chr3 76451832 76452060 -141585098 + MIR SINE MIR 16 262 0 263 253 212 0 chr3 76452058 76452157 -141585001 - L2 LINE L2 -577 2737 2618 * 593 253 149 0 chr3 76453703 76453857 -141583301 - MER5A DNA MER1_type 0 189 13 186 302 79 0 chr3 76453909 76453972 -141583186 + MIR SINE MIR 53 120 -142 181 307 80 23 chr3 76453970 76454146 -141583012 - L2 LINE L2 -1 3312 3127 * 813 302 16 0 chr3 76454157 76454399 -141582759 - MIR SINE MIR 0 262 17 1064 225 18 0 chr3 76454400 76454618 -141582540 - MER58A DNA MER1_type -2 222 1 1208 214 76 7 chr3 76454660 76454963 -141582195 - MER33 DNA MER1_type 0 324 1 240 219 31 0 chr3 76454984 76455048 -141582110 - MER5A DNA MER1_type -98 91 26 734 241 100 0 chr3 76456130 76456350 -141580808 + MIR SINE MIR 2 243 -19 445 250 36 93 chr3 76457918 76458046 -141579112 + MIR SINE MIR 34 142 -120 2254 189 33 24 chr3 76458046 76458506 -141578652 - MLT1C LTR MaLR 0 467 4 445 250 36 93 chr3 76458506 76458609 -141578549 + MIR SINE MIR 142 249 -13 180 77 0 0 chr3 76458694 76458720 -141578438 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 206 250 36 60 chr3 76460295 76460379 -141576779 - L2 LINE L2 -298 2974 2893 323 200 0 67 chr3 76460707 76460797 -141576361 + MIR SINE MIR 90 173 -89 334 239 217 33 chr3 76460890 76461102 -141576056 + MIR SINE MIR 14 248 -14 2275 109 0 0 chr3 76461250 76461543 -141575615 - AluSx SINE Alu -19 293 1 682 292 98 30 chr3 76462695 76463154 -141574004 - L1ME3A LINE L1 -176 5990 5501 513 0 0 0 chr3 76463839 76463896 -141573262 + (TG)n Simple_repeat Simple_repeat 2 58 0 198 286 58 58 chr3 76464892 76465046 -141572112 + L2 LINE L2 2826 2979 -334 204 321 196 0 chr3 76465132 76465244 -141571914 + L2 LINE L2 3180 3313 0 335 125 181 0 chr3 76465319 76465391 -141571767 + MER117 DNA MER1_type 10 94 -103 2688 185 62 43 chr3 76466428 76466868 -141570290 + Tigger7 DNA MER2_type 1 431 -2156 2028 121 31 0 chr3 76466868 76467157 -141570001 + AluSg SINE Alu 5 302 -8 2688 185 62 43 chr3 76467157 76467374 -141569784 + Tigger7 DNA MER2_type 431 2546 -41 780 206 103 0 chr3 76467784 76467930 -141569228 + AluJb SINE Alu 137 297 -15 259 297 226 11 chr3 76469393 76469735 -141567423 + L2 LINE L2 2642 3051 -221 409 205 253 18 chr3 76469975 76470141 -141567017 + MER113 DNA MER1_type? 48 252 -269 423 234 37 0 chr3 76470185 76470292 -141566866 + MER113 DNA MER1_type? 334 444 -77 289 195 236 32 chr3 76470389 76470512 -141566646 + MER117 DNA MER1_type 7 154 -43 356 343 27 41 chr3 76470749 76470895 -141566263 + L2 LINE L2 3121 3264 -8 802 236 23 0 chr3 76471746 76471920 -141565238 - MER104 DNA MER2_type -2 178 1 635 190 172 18 chr3 76472145 76472308 -141564850 - MER53 DNA DNA 0 189 2 272 189 0 19 chr3 76472780 76472833 -141564325 - MIR SINE MIR -114 148 97 681 215 70 35 chr3 76473716 76473888 -141563270 + MER5B DNA MER1_type 1 178 0 398 290 59 41 chr3 76474947 76475116 -141562042 + MIR SINE MIR 70 241 -21 271 239 28 0 chr3 76475698 76475769 -141561389 - Charlie8 DNA MER1_type -4 2413 2341 1994 170 141 5 chr3 76475845 76476222 -141560936 - MSTA LTR MaLR 0 428 1 1075 157 0 0 chr3 76477372 76477525 -141559633 + AluSg/x SINE Alu 137 289 -23 459 158 50 33 chr3 76477563 76477683 -141559475 - MER53 DNA DNA -60 129 8 3048 133 38 68 chr3 76478979 76479526 -141557632 + LTR26B LTR ERV1 1 531 0 542 253 39 45 chr3 76479910 76480064 -141557094 - MIR SINE MIR -94 168 16 948 246 125 14 chr3 76480446 76480807 -141556351 + MER113 DNA MER1_type? 1 401 -120 2120 113 135 0 chr3 76481230 76481549 -141555609 + THE1B LTR MaLR 3 364 0 235 275 50 67 chr3 76485135 76485255 -141551903 + MIR SINE MIR 66 183 -79 252 0 0 0 chr3 76485431 76485459 -141551699 + (A)n Simple_repeat Simple_repeat 1 28 0 332 316 35 35 chr3 76485845 76485959 -141551199 - L2 LINE L2 -20 3252 3139 330 26 0 0 chr3 76486172 76486211 -141550947 + (GA)n Simple_repeat Simple_repeat 2 40 0 332 319 50 65 chr3 76487276 76487496 -141549662 + L1ME3A LINE L1 551 773 -5346 1653 218 18 37 chr3 76487496 76487876 -141549282 + MLT1A2 LTR MaLR 1 373 -1 332 319 50 65 chr3 76487876 76488316 -141548842 + L1ME3A LINE L1 773 1201 -4918 236 222 111 30 chr3 76488599 76488685 -141548473 + L1PBa LINE L1 2546 2642 -4221 1625 168 0 0 chr3 76488685 76488935 -141548223 + AluJb SINE Alu 1 250 -62 2799 269 106 49 chr3 76488935 76489087 -141548071 + L1ME3A LINE L1 2879 3021 -3124 820 67 0 0 chr3 76489087 76489191 -141547967 + L1MA1 LINE L1 6197 6300 -2 2799 269 106 49 chr3 76489191 76490338 -141546820 + L1ME3A LINE L1 3021 4102 -2043 372 43 0 0 chr3 76490338 76490384 -141546774 + (TG)n Simple_repeat Simple_repeat 2 47 0 2799 269 106 49 chr3 76490384 76491536 -141545622 + L1ME3A LINE L1 4102 5513 -632 435 198 31 10 chr3 76491512 76491608 -141545550 + L1ME3A LINE L1 5851 5948 -205 * 303 218 41 136 chr3 76491664 76491884 -141545274 + L1ME3A LINE L1 5948 6146 -7 204 125 0 0 chr3 76491923 76491955 -141545203 + (A)n Simple_repeat Simple_repeat 1 32 0 586 254 94 31 chr3 76492195 76492419 -141544739 - MIR SINE MIR -2 260 23 514 311 101 9 chr3 76494522 76494750 -141542408 + L2 LINE L2 2837 3085 -228 303 299 120 0 chr3 76495044 76495161 -141541997 - MIR3 SINE MIR -24 184 54 504 198 16 40 chr3 76497561 76497687 -141539471 + MER5B DNA MER1_type 55 177 -1 258 269 36 69 chr3 76498954 76499160 -141537998 - MIR SINE MIR -1 261 9 5051 119 43 26 chr3 76500200 76500966 -141536192 - MER4E LTR ERV1 0 779 1 396 272 37 37 chr3 76501462 76501598 -141535560 + MER5A DNA MER1_type 50 185 -4 907 234 128 53 chr3 76503052 76503467 -141533691 - MLT1C LTR MaLR 0 467 22 4228 78 20 24 chr3 76504238 76504792 -141532366 + MER41A LTR ERV1 3 554 0 379 321 28 0 chr3 76505599 76505705 -141531453 - MIR SINE MIR -134 128 20 1935 136 83 12 chr3 76506238 76506577 -141530581 + MLT1A1 LTR MaLR 1 363 -2 335 280 131 30 chr3 76506828 76506996 -141530162 - MIR SINE MIR -5 257 73 772 195 63 68 chr3 76507638 76507828 -141529330 - MER5A DNA MER1_type 0 189 1 191 299 45 15 chr3 76508531 76508598 -141528560 - MIR SINE MIR -85 177 109 285 29 0 0 chr3 76508608 76508642 -141528516 + (TGG)n Simple_repeat Simple_repeat 3 36 0 828 219 25 54 chr3 76508656 76508898 -141528260 - MIR SINE MIR 0 262 28 1551 207 82 36 chr3 76509212 76509690 -141527468 + MER113 DNA MER1_type? 6 505 -16 224 117 50 17 chr3 76510136 76510196 -141526962 + GA-rich Low_complexity Low_complexity 4 65 0 591 278 40 11 chr3 76510574 76510750 -141526408 - MIR SINE MIR -80 182 2 651 241 96 50 chr3 76510964 76511184 -141525974 - MIR SINE MIR -1 261 32 290 299 55 49 chr3 76511684 76511848 -141525310 - MER5A DNA MER1_type -5 184 20 560 233 27 48 chr3 76512027 76512173 -141524985 + MLT1K LTR MaLR 391 533 -55 523 303 48 19 chr3 76513077 76513285 -141523873 - MIR SINE MIR -34 228 15 652 273 41 27 chr3 76513323 76513400 -141523758 + MER58A DNA MER1_type 1 75 -2345 5722 143 47 48 chr3 76513400 76514470 -141522688 + MER11C LTR ERVK 1 1069 -2 652 273 41 27 chr3 76514470 76514612 -141522546 + MER58A DNA MER1_type 75 223 -1 405 238 38 69 chr3 76514639 76514799 -141522359 + MIR SINE MIR 83 237 -25 2527 113 34 3 chr3 76514799 76515152 -141522006 + THE1B LTR MaLR 1 364 0 1461 191 143 31 chr3 76516584 76516940 -141520218 + MSTD LTR MaLR 1 396 0 613 365 48 31 chr3 76517188 76517726 -141519432 + L2 LINE L2 2545 3096 -176 458 188 10 0 chr3 76518828 76518929 -141518229 + GA-rich Low_complexity Low_complexity 3 104 0 369 303 25 8 chr3 76519676 76519798 -141517360 + MIR3 SINE MIR 70 193 -15 295 241 157 0 chr3 76519853 76519936 -141517222 - MIR SINE MIR -159 103 8 180 176 0 0 chr3 76520250 76520284 -141516874 + (CA)n Simple_repeat Simple_repeat 1 34 0 2729 191 26 2 chr3 76520887 76521380 -141515778 - MLT1D LTR MaLR 0 505 1 905 259 93 16 chr3 76521429 76521811 -141515347 - L1ME3 LINE L1 0 6162 5752 2356 144 17 6 chr3 76521830 76522190 -141514968 + THE1B LTR MaLR 1 364 0 604 235 70 98 chr3 76522742 76523129 -141514029 + LTR52 LTR ERVL 8 383 -38 2170 123 3 7 chr3 76523194 76523503 -141513655 + AluSg SINE Alu 1 308 -2 1270 305 37 39 chr3 76523585 76524130 -141513028 + MLT1K LTR MaLR 30 573 -15 1606 200 45 91 chr3 76524642 76525014 -141512144 + MLT1D LTR MaLR 1 343 -162 1594 204 58 45 chr3 76525014 76525396 -141511762 - MLT1B LTR MaLR -3 387 1 1606 200 45 91 chr3 76525396 76525552 -141511606 + MLT1D LTR MaLR 343 505 0 231 215 37 103 chr3 76525556 76525663 -141511495 - MIR SINE MIR -46 216 117 328 261 98 72 chr3 76525820 76525973 -141511185 - MIR3 SINE MIR -50 158 2 186 319 0 0 chr3 76526048 76526095 -141511063 - MIR SINE MIR -167 95 49 27 0 0 0 chr3 76527374 76527401 -141509757 + AT_rich Low_complexity Low_complexity 1 27 0 228 143 0 0 chr3 76527706 76527748 -141509410 + (CATA)n Simple_repeat Simple_repeat 4 45 0 320 318 24 0 chr3 76528681 76528766 -141508392 + L2 LINE L2 3186 3272 0 2276 103 6 0 chr3 76529338 76529649 -141507509 + AluSq SINE Alu 1 313 0 229 248 60 90 chr3 76530088 76530221 -141506937 + LTR67 LTR ERVL 426 554 -3 350 311 9 0 chr3 76531011 76531117 -141506041 - MIR SINE MIR -1 261 155 297 75 0 0 chr3 76531154 76531194 -141505964 + (CA)n Simple_repeat Simple_repeat 2 41 0 298 204 148 9 chr3 76532831 76532939 -141504219 - MIR SINE MIR -70 138 16 515 291 44 14 chr3 76533261 76533476 -141503682 - MIR SINE MIR -17 245 24 2768 150 12 7 chr3 76533637 76534063 -141503095 + MSTA LTR MaLR 1 428 0 261 171 197 13 chr3 76534506 76534582 -141502576 + L2 LINE L2 3174 3263 -9 816 297 165 8 chr3 76534583 76534953 -141502205 - L2 LINE L2 -7 3306 2879 243 146 0 0 chr3 76535163 76535204 -141501954 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 516 350 42 4 chr3 76535290 76535530 -141501628 - MIR SINE MIR -1 261 13 256 344 48 16 chr3 76535551 76535676 -141501482 + L3 LINE CR1 1344 1472 -105 2069 138 0 0 chr3 76535985 76536276 -141500882 + AluSg SINE Alu 1 291 -19 38 0 0 0 chr3 76536520 76536558 -141500600 + AT_rich Low_complexity Low_complexity 1 38 0 970 213 0 0 chr3 76536558 76536718 -141500440 - AluJo/FRAM SINE Alu -16 296 137 2128 131 10 10 chr3 76536718 76537023 -141500135 - AluSx SINE Alu -7 305 1 425 262 32 8 chr3 76537043 76537169 -141499989 - L1MC/D LINE L1 -1987 5821 5693 * 1401 153 38 11 chr3 76537167 76537429 -141499729 - L1MB7 LINE L1 -146 6038 5770 189 0 0 0 chr3 76538207 76538228 -141498930 + (TCTCC)n Simple_repeat Simple_repeat 1 21 0 686 304 42 4 chr3 76538520 76538760 -141498398 - MIR SINE MIR -13 249 1 539 231 181 0 chr3 76538878 76539038 -141498120 - MIR SINE MIR -31 231 43 323 276 151 13 chr3 76539782 76539934 -141497224 - MIR SINE MIR -11 251 79 672 279 61 24 chr3 76540033 76540280 -141496878 - MIR SINE MIR -1 261 6 21 36 0 0 chr3 76540323 76540351 -141496807 + AT_rich Low_complexity Low_complexity 1 28 0 1132 62 0 0 chr3 76540511 76540641 -141496517 + AluSq/x SINE Alu 1 130 -182 310 309 142 19 chr3 76541392 76541554 -141495604 - L2 LINE L2 -533 2781 2600 1467 168 4 22 chr3 76541583 76541809 -141495349 + MER58A DNA MER1_type 3 224 0 326 368 149 5 chr3 76541809 76542192 -141494966 + L2 LINE L2 2872 3309 -4 21 0 0 0 chr3 76542236 76542257 -141494901 + AT_rich Low_complexity Low_complexity 1 21 0 559 215 7 62 chr3 76542319 76542341 -141494817 + L1ME3A LINE L1 5283 5305 -859 2118 134 3 3 chr3 76542341 76542640 -141494518 + AluSx SINE Alu 1 299 -13 559 215 7 62 chr3 76542640 76542858 -141494300 + L1ME3A LINE L1 5305 5511 -653 180 176 0 0 chr3 76543348 76543382 -141493776 + (CA)n Simple_repeat Simple_repeat 1 34 0 378 291 79 42 chr3 76543741 76543930 -141493228 + MIR SINE MIR 45 240 -22 1860 191 23 25 chr3 76543930 76544329 -141492829 - MLT1D LTR MaLR 0 505 108 1267 219 101 61 chr3 76544464 76544867 -141492291 + L1ME3A LINE L1 5656 6084 -86 2315 103 0 0 chr3 76544867 76545167 -141491991 - AluSg SINE Alu -10 300 1 1267 219 101 61 chr3 76545167 76545256 -141491902 + L1ME3A LINE L1 6084 6168 -2 25 65 0 0 chr3 76545519 76545565 -141491593 + AT_rich Low_complexity Low_complexity 1 46 0 240 254 184 18 chr3 76545598 76545712 -141491446 - MIR SINE MIR -80 182 50 1435 276 103 16 chr3 76546250 76546747 -141490411 + MLT1K LTR MaLR 44 583 -5 318 311 67 17 chr3 76546749 76546868 -141490290 + MIR SINE MIR 90 214 -48 459 0 0 0 chr3 76548066 76548117 -141489041 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 1869 146 3 10 chr3 76548117 76548405 -141488753 - AluJb SINE Alu -26 286 1 418 282 46 46 chr3 76548464 76548659 -141488499 - L1MC/D LINE L1 -2156 5652 5458 206 346 91 60 chr3 76549313 76549611 -141487547 + L2 LINE L2 2928 3234 -38 187 244 0 0 chr3 76549771 76549812 -141487346 - MIR SINE MIR -98 164 124 1040 136 7 0 chr3 76549978 76550125 -141487033 - L1PB4 LINE L1 -19 6137 5990 181 393 0 0 chr3 76550146 76550202 -141486956 - MIR SINE MIR -205 57 2 336 331 73 8 chr3 76551343 76551467 -141485691 + L2 LINE L2 3141 3272 0 23 0 0 0 chr3 76551556 76551579 -141485579 + AT_rich Low_complexity Low_complexity 1 23 0 379 346 37 15 chr3 76553145 76553281 -141483877 + MER91A DNA MER1_type 35 173 -23 225 0 0 0 chr3 76553310 76553335 -141483823 + (T)n Simple_repeat Simple_repeat 1 25 0 214 261 210 17 chr3 76554385 76554504 -141482654 - L3 LINE CR1 -25 1552 1411 652 221 23 8 chr3 76554583 76554714 -141482444 + MIR SINE MIR 51 183 -79 255 241 46 0 chr3 76554783 76554891 -141482267 + (TATAA)n Simple_repeat Simple_repeat 5 117 0 313 269 0 74 chr3 76554955 76555063 -141482095 + L2 LINE L2 3173 3272 0 1650 91 55 9 chr3 76555262 76555482 -141481676 - MER30 DNA MER1_type 0 230 1 263 277 31 0 chr3 76555559 76555624 -141481534 - L3 LINE CR1 -464 1113 1047 281 281 12 0 chr3 76556182 76556264 -141480894 - MER113 DNA MER1_type? -397 124 42 259 226 128 90 chr3 76556353 76556486 -141480672 + MIR SINE MIR 117 254 -8 * 557 333 43 17 chr3 76556456 76556687 -141480471 - MIR SINE MIR -12 250 14 326 321 9 19 chr3 76556746 76556852 -141480306 + L2 LINE L2 3192 3296 -17 303 234 0 53 chr3 76556861 76556955 -141480203 + GA-rich Low_complexity Low_complexity 4 92 0 838 299 68 33 chr3 76557367 76558215 -141478943 + L1ME4a LINE L1 5123 6017 -104 362 353 59 6 chr3 76558514 76558684 -141478474 - MIR3 SINE MIR -10 198 20 1850 175 0 22 chr3 76559056 76559370 -141477788 - AluJb SINE Alu -5 307 1 804 221 23 12 chr3 76559604 76559776 -141477382 - FRAM SINE Alu -1 175 2 25 0 0 0 chr3 76559787 76559812 -141477346 + AT_rich Low_complexity Low_complexity 1 25 0 2212 120 0 0 chr3 76559812 76560111 -141477047 - AluSx SINE Alu -13 299 1 1043 212 141 0 chr3 76560236 76560519 -141476639 + MER33 DNA MER1_type 2 324 0 429 20 0 0 chr3 76561255 76561305 -141475853 + (CA)n Simple_repeat Simple_repeat 2 51 0 377 276 41 35 chr3 76561358 76561386 -141475772 - L1PA16 LINE L1 -300 5866 5839 714 285 89 21 chr3 76561386 76561677 -141475481 - L1MC4a LINE L1 -1976 5832 5522 1263 264 110 56 chr3 76562106 76562624 -141474534 + MLT1H LTR MaLR 1 546 -3 932 310 105 8 chr3 76562676 76563047 -141474111 - L2 LINE L2 -5 3267 2861 1797 194 0 6 chr3 76563564 76563878 -141473280 + AluJo SINE Alu 1 312 0 316 323 69 15 chr3 76563969 76564099 -141473059 + MIR SINE MIR 62 198 -64 277 326 0 10 chr3 76565364 76565462 -141471696 + (TGAA)n Simple_repeat Simple_repeat 1 97 0 390 299 11 64 chr3 76565708 76565836 -141471322 + L2 LINE L2 1869 1985 -1329 1939 161 3 7 chr3 76565836 76566141 -141471017 - AluJb SINE Alu -8 304 1 390 299 11 64 chr3 76566141 76566199 -141470959 + L2 LINE L2 1985 2045 -1269 299 332 32 21 chr3 76566251 76566438 -141470720 + L2 LINE L2 2871 3059 -213 434 301 113 25 chr3 76566578 76566781 -141470377 - MIR SINE MIR -13 249 29 290 167 87 0 chr3 76566826 76566881 -141470277 - Alu SINE Alu -9 293 241 1156 30 0 0 chr3 76567680 76567815 -141469343 - AluY SINE Alu -4 307 173 352 254 131 25 chr3 76568386 76568508 -141468650 - L2 LINE L2 -16 3297 3163 327 323 132 45 chr3 76568580 76568936 -141468222 + L2 LINE L2 572 958 -2356 189 176 0 0 chr3 76569058 76569092 -141468066 - L2 LINE L2 -20 3252 3219 620 274 204 32 chr3 76569698 76570228 -141466930 + L2 LINE L2 2679 3311 -2 506 265 194 18 chr3 76571216 76571386 -141465772 - MIR SINE MIR -50 212 13 508 290 53 39 chr3 76572074 76572281 -141464877 - MIR SINE MIR -51 211 2 198 0 0 0 chr3 76572980 76573002 -141464156 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 285 29 0 0 chr3 76573175 76573209 -141463949 + (T)n Simple_repeat Simple_repeat 1 34 0 4721 173 20 31 chr3 76574517 76575490 -141461668 + L1MB4 LINE L1 5188 6136 -44 2154 133 0 0 chr3 76575490 76575784 -141461374 + AluSc SINE Alu 1 294 -15 4721 173 20 31 chr3 76575784 76575829 -141461329 + L1MB4 LINE L1 6136 6180 0 415 287 60 31 chr3 76576131 76576351 -141460807 - MIR SINE MIR -32 230 6 237 325 0 12 chr3 76578031 76578111 -141459047 + GA-rich Low_complexity Low_complexity 1 79 0 243 268 28 42 chr3 76578111 76578182 -141458976 + MIR3 SINE MIR 2 71 -137 1742 148 46 33 chr3 76578426 76578540 -141458618 + AluJo SINE Alu 6 117 -195 249 33 0 0 chr3 76578540 76578570 -141458588 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1742 148 46 33 chr3 76578570 76578758 -141458400 + AluJo SINE Alu 117 312 0 233 303 101 34 chr3 76579466 76579585 -141457573 - MIR SINE MIR -107 155 29 420 261 15 8 chr3 76579866 76580000 -141457158 - MER117 DNA MER1_type -56 141 7 1583 318 114 31 chr3 76580062 76580721 -141456437 + L2 LINE L2 1968 2743 -570 2356 101 0 0 chr3 76580721 76581018 -141456140 + AluSg SINE Alu 1 297 -13 1583 318 114 31 chr3 76581018 76581380 -141455778 + L2 LINE L2 2743 3073 -240 514 179 48 31 chr3 76581384 76581515 -141455643 - MLT1D LTR MaLR 0 390 274 4188 222 41 6 chr3 76581515 76582663 -141454495 - L1M2 LINE L1 -4393 2396 1232 1982 299 34 25 chr3 76582753 76583396 -141453762 - L1M2 LINE L1 -6132 657 9 614 230 109 17 chr3 76583408 76583582 -141453576 - MLT1D LTR MaLR -313 192 3 269 250 47 62 chr3 76583596 76583724 -141453434 + L2 LINE L2 3108 3233 -80 2471 74 3 3 chr3 76583770 76584081 -141453077 - AluY SINE Alu 0 311 1 714 265 39 21 chr3 76584680 76584914 -141452244 + MIR SINE MIR 12 249 -13 255 114 0 0 chr3 76585336 76585380 -141451778 + (ATG)n Simple_repeat Simple_repeat 2 45 0 2510 77 0 3 chr3 76585422 76585734 -141451424 - AluY SINE Alu 0 311 1 387 287 99 22 chr3 76585779 76585960 -141451198 - MIR SINE MIR -65 197 3 575 266 83 0 chr3 76586254 76586423 -141450735 + MIR SINE MIR 75 257 -5 214 158 0 26 chr3 76586426 76586464 -141450694 + GA-rich Low_complexity Low_complexity 4 40 0 241 308 50 8 chr3 76587642 76587762 -141449396 + L1ME4a LINE L1 5543 5667 -454 244 284 74 58 chr3 76587845 76588102 -141449056 + L1ME4a LINE L1 5796 6056 -65 1850 175 65 40 chr3 76588112 76588155 -141449003 - L1MB2 LINE L1 -2 6169 6129 2149 132 0 7 chr3 76588155 76588459 -141448699 - AluSx SINE Alu -10 302 1 1850 175 65 40 chr3 76588459 76588505 -141448653 - L1MB2 LINE L1 -42 6129 6086 1979 168 55 0 chr3 76588505 76588833 -141448325 - MER7A DNA MER2_type 0 346 3 1850 175 65 40 chr3 76588833 76589187 -141447971 - L1MB2 LINE L1 -85 6086 5714 255 345 28 55 chr3 76589319 76589464 -141447694 + MIR SINE MIR 1 141 -121 942 235 59 5 chr3 76590532 76590753 -141446405 + MIR SINE MIR 19 251 -11 279 261 180 0 chr3 76591218 76591329 -141445829 + L2 LINE L2 3183 3313 0 442 265 134 40 chr3 76591397 76591695 -141445463 + L2 LINE L2 2936 3261 -52 273 267 50 30 chr3 76591912 76592013 -141445145 + MER21B LTR ERV1 1 103 -760 347 222 0 42 chr3 76592015 76592087 -141445071 + MER21B LTR ERV1 20 88 -775 3565 226 35 35 chr3 76592092 76592902 -141444256 + MER21B LTR ERV1 43 852 -11 2437 61 6 29 chr3 76593226 76593539 -141443619 - AluY SINE Alu -5 306 1 1412 180 18 151 chr3 76593596 76594040 -141443118 + MSTD LTR MaLR 1 385 -11 249 280 54 32 chr3 76594505 76594598 -141442560 - MIR3 SINE MIR -47 161 67 349 260 49 32 chr3 76595394 76595517 -141441641 + Charlie8 DNA MER1_type 34 158 -2259 338 280 254 0 chr3 76596463 76596581 -141440577 - MER5A DNA MER1_type -29 160 13 834 202 94 25 chr3 76597360 76597563 -141439595 - MER20 DNA MER1_type 0 219 3 591 255 13 89 chr3 76597565 76597800 -141439358 + MIR SINE MIR 32 248 -14 423 0 0 0 chr3 76598206 76598253 -141438905 + (CA)n Simple_repeat Simple_repeat 2 48 0 248 281 85 98 chr3 76599622 76599650 -141437508 - MIR SINE MIR -15 247 220 2173 122 0 0 chr3 76599650 76599946 -141437212 - AluSg SINE Alu -14 296 1 248 281 85 98 chr3 76599946 76600152 -141437006 - MIR SINE MIR -42 220 16 367 355 46 9 chr3 76600155 76600372 -141436786 + MIR SINE MIR 9 233 -29 446 246 239 12 chr3 76601736 76601903 -141435255 + MIR SINE MIR 53 257 -5 15924 35 3 0 chr3 76602094 76604663 -141432495 - L1PA5 LINE L1 0 6154 3579 796 163 148 15 chr3 76604711 76604914 -141432244 + MER63 DNA MER1_type 1 230 -831 2072 187 109 0 chr3 76604941 76605380 -141431778 + MER63 DNA MER1_type 574 1060 -1 630 178 89 14 chr3 76605733 76605879 -141431279 + L1MB3 LINE L1 6026 6182 -1 2078 200 6 6 chr3 76605971 76606336 -141430822 + MLT1A1 LTR MaLR 1 365 0 365 291 173 0 chr3 76606349 76606476 -141430682 - MIR SINE MIR -32 230 82 822 138 100 12 chr3 76606557 76606717 -141430441 + MER96B DNA MER1_type? 1 174 -243 1159 164 50 0 chr3 76606782 76606983 -141430175 - MER2 DNA MER2_type -134 211 1 335 308 70 0 chr3 76607113 76607162 -141429996 + MER96B DNA MER1_type? 248 292 -125 603 137 0 10 chr3 76607162 76607264 -141429894 - L1MA7 LINE L1 -7 6284 6184 335 308 70 0 chr3 76607264 76607370 -141429788 + MER96B DNA MER1_type? 292 414 -3 398 290 96 70 chr3 76608734 76608952 -141428206 + L1MEd LINE L1 714 946 -5173 1297 211 13 4 chr3 76608952 76609189 -141427969 - MER8 DNA MER2_type 0 239 1 398 290 96 70 chr3 76609189 76609325 -141427833 + L1MEd LINE L1 946 1077 -5042 225 0 0 0 chr3 76609521 76609546 -141427612 + (T)n Simple_repeat Simple_repeat 1 25 0 1366 205 153 11 chr3 76609584 76609931 -141427227 - MSTD LTR MaLR 0 396 1 269 259 83 93 chr3 76610228 76610421 -141426737 - MIR SINE MIR -35 227 37 308 56 0 56 chr3 76610636 76610690 -141426468 + L1MB4 LINE L1 6126 6176 -4 314 317 48 48 chr3 76610979 76611228 -141425930 - L2 LINE L2 -639 2675 2427 29 0 0 0 chr3 76611450 76611479 -141425679 + AT_rich Low_complexity Low_complexity 1 29 0 316 268 24 49 chr3 76612044 76612167 -141424991 - MIR SINE MIR -17 245 126 296 397 26 13 chr3 76612445 76612601 -141424557 - MIR3 SINE MIR -48 160 3 498 256 15 8 chr3 76612678 76612811 -141424347 + MER117 DNA MER1_type 55 188 -9 1035 182 6 0 chr3 76612927 76613092 -141424066 + FAM SINE Alu 1 166 -9 27840 54 6 1 chr3 76613278 76619376 -141417782 + L1PA5 LINE L1 11 6141 -13 398 290 96 70 chr3 76620412 76620630 -141416528 + L1MEd LINE L1 714 946 -5173 1297 211 13 4 chr3 76620630 76620867 -141416291 - MER8 DNA MER2_type 0 239 1 398 290 96 70 chr3 76620867 76621003 -141416155 + L1MEd LINE L1 946 1077 -5042 216 0 0 0 chr3 76621199 76621223 -141415935 + (T)n Simple_repeat Simple_repeat 1 24 0 1366 205 153 11 chr3 76621262 76621609 -141415549 - MSTD LTR MaLR 0 396 1 269 259 83 93 chr3 76621906 76622099 -141415059 - MIR SINE MIR -35 227 37 183 42 0 0 chr3 76622661 76622685 -141414473 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chr3 76622953 76622976 -141414182 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr3 76623646 76623670 -141413488 + AT_rich Low_complexity Low_complexity 1 24 0 42704 57 7 2 chr3 76623670 76629768 -141407390 - L1PA5 LINE L1 -13 6141 11 1035 182 6 0 chr3 76629954 76630119 -141407039 - FAM SINE Alu -9 166 1 498 256 15 8 chr3 76630235 76630368 -141406790 - MER117 DNA MER1_type -9 188 55 296 397 26 13 chr3 76630445 76630601 -141406557 + MIR3 SINE MIR 3 160 -48 316 268 24 49 chr3 76630879 76631002 -141406156 + MIR SINE MIR 126 245 -17 29 0 0 0 chr3 76631568 76631597 -141405561 + AT_rich Low_complexity Low_complexity 1 29 0 725 319 102 38 chr3 76631819 76632642 -141404516 + L2 LINE L2 2427 3305 -8 1130 65 7 0 chr3 76632675 76632814 -141404344 - AluY SINE Alu -27 284 145 247 200 0 0 chr3 76632905 76632945 -141404213 - MER3 DNA MER1_type 0 209 170 263 119 24 0 chr3 76632953 76632995 -141404163 - MER3 DNA MER1_type -164 45 3 1503 202 32 76 chr3 76634035 76634470 -141402688 - L1MB7 LINE L1 -9 6175 5760 525 267 105 11 chr3 76636156 76636347 -141400811 - MIR SINE MIR -34 228 20 195 239 65 0 chr3 76636451 76636497 -141400661 + MIR SINE MIR 65 113 -95 23 0 0 0 chr3 76638148 76638171 -141398987 + AT_rich Low_complexity Low_complexity 1 23 0 1944 89 4 41 chr3 76639820 76640091 -141397067 - AluSx SINE Alu -10 302 42 417 314 8 0 chr3 76640559 76640683 -141396475 + MIR SINE MIR 72 196 -66 2477 99 12 6 chr3 76641554 76641897 -141395261 + L1PA12 LINE L1 5814 6158 -10 514 296 8 0 chr3 76643831 76643956 -141393202 + MIR SINE MIR 24 149 -113 1017 184 86 41 chr3 76646291 76646391 -141390767 + MLT1A1 LTR MaLR 1 95 -270 2074 97 23 20 chr3 76646391 76646690 -141390468 + AluSx SINE Alu 1 300 -12 1017 184 86 41 chr3 76646690 76646834 -141390324 + MLT1A1 LTR MaLR 95 256 -109 2443 117 19 32 chr3 76648325 76648694 -141388464 - THE1B LTR MaLR 0 364 1 420 268 168 23 chr3 76649013 76649233 -141387925 - MIR SINE MIR 0 262 11 257 282 36 27 chr3 76651015 76651125 -141386033 + HAL1b LINE L1 973 1083 -265 527 278 6 6 chr3 76651190 76651370 -141385788 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 209 310 70 0 chr3 76651422 76651493 -141385665 - MIR SINE MIR -134 128 53 1139 149 15 46 chr3 76651794 76651989 -141385169 + AluSg/x SINE Alu 112 300 -12 607 275 57 49 chr3 76653851 76654095 -141383063 + MIR SINE MIR 14 259 -3 733 233 98 50 chr3 76654272 76654590 -141382568 - L1MC5 LINE L1 -479 7482 7150 236 75 75 0 chr3 76654996 76655036 -141382122 - L1MB2 LINE L1 0 6171 6129 738 190 76 19 chr3 76655044 76655202 -141381956 - FRAM SINE Alu -9 167 1 871 135 0 8 chr3 76655223 76655356 -141381802 + AluSg/x SINE Alu 167 298 -14 267 185 0 46 chr3 76655382 76655447 -141381711 + LTR66 LTR ERVL 394 455 -155 515 279 15 34 chr3 76655570 76655995 -141381163 + C-rich Low_complexity Low_complexity 1 417 0 245 181 42 97 chr3 76656129 76656201 -141380957 - Alu SINE Alu -249 50 1 871 135 0 8 chr3 76656221 76656354 -141380804 + AluSg/x SINE Alu 167 298 -14 245 235 0 0 chr3 76656356 76656407 -141380751 + L1MC4 LINE L1 6652 6702 -1340 225 271 0 0 chr3 76656375 76656434 -141380724 - L1MC4 LINE L1 -1340 6702 6644 * 5899 175 42 6 chr3 76656420 76657880 -141379278 - L1M1 LINE L1 -627 5673 4169 356 311 85 24 chr3 76657953 76658329 -141378829 - HAL1b LINE L1 -891 457 59 21 57 0 0 chr3 76658413 76658448 -141378710 + AT_rich Low_complexity Low_complexity 1 35 0 617 111 0 65 chr3 76660294 76660402 -141376756 - AluSg/x SINE Alu -2 310 210 2099 126 0 26 chr3 76660524 76660833 -141376325 - AluSq SINE Alu -12 301 1 2360 92 0 0 chr3 76660835 76661127 -141376031 - AluSg SINE Alu -18 292 1 333 0 0 0 chr3 76661249 76661286 -141375872 + (TG)n Simple_repeat Simple_repeat 2 38 0 2454 111 36 28 chr3 76662183 76662543 -141374615 + THE1B LTR MaLR 2 364 0 566 304 92 18 chr3 76664083 76664300 -141372858 + MIR SINE MIR 11 243 -19 836 267 78 18 chr3 76665476 76665862 -141371296 - L1MC4 LINE L1 -7 8035 7627 306 0 0 0 chr3 76667157 76667191 -141369967 + (TG)n Simple_repeat Simple_repeat 1 34 0 288 154 0 0 chr3 76667193 76667245 -141369913 + GA-rich Low_complexity Low_complexity 2 53 0 1204 159 33 0 chr3 76668003 76668217 -141368941 - L1MA5 LINE L1 0 6300 6080 624 235 106 11 chr3 76668639 76668818 -141368340 + MIR SINE MIR 67 262 0 271 272 141 0 chr3 76669060 76669152 -141368006 + MIR SINE MIR 158 262 0 2593 36 13 7 chr3 76670127 76670434 -141366724 - AluY SINE Alu -2 309 1 1083 269 4 0 chr3 76670576 76670814 -141366344 - MIR SINE MIR -16 246 8 2833 178 43 20 chr3 76670852 76671390 -141365768 + MER44D DNA MER2_type 1 605 0 22 0 0 0 chr3 76671651 76671673 -141365485 + AT_rich Low_complexity Low_complexity 1 22 0 282 218 48 109 chr3 76671928 76672093 -141365065 - L2 LINE L2 -41 3272 3118 2090 125 0 0 chr3 76673358 76673663 -141363495 - AluSg SINE Alu 0 305 1 1086 98 0 0 chr3 76673663 76673796 -141363362 - AluSg SINE Alu -177 133 1 319 333 114 48 chr3 76674087 76674220 -141362938 - L2 LINE L2 0 3313 3190 857 242 14 14 chr3 76674220 76674435 -141362723 - MER58C DNA MER1_type 0 215 1 319 333 114 48 chr3 76674435 76674900 -141362258 - L2 LINE L2 -123 3190 2581 2060 176 52 35 chr3 76674900 76675359 -141361799 + MLT1C LTR MaLR 1 467 0 319 333 114 48 chr3 76675359 76675498 -141361660 - L2 LINE L2 -732 2581 2453 309 125 0 0 chr3 76676993 76677041 -141360117 + MLT2A2 LTR ERVL 398 445 -8 31 0 0 0 chr3 76677439 76677470 -141359688 + AT_rich Low_complexity Low_complexity 1 31 0 6367 77 7 5 chr3 76677493 76678309 -141358849 + L1PA8 LINE L1 5353 6170 -2 2316 147 42 34 chr3 76678758 76679299 -141357859 - MLT2A2 LTR ERVL -8 546 1 1766 171 99 38 chr3 76680314 76680707 -141356451 + MSTB1 LTR MaLR 16 432 0 306 347 102 32 chr3 76681650 76681935 -141355223 - L2 LINE L2 -3 3269 2965 582 208 260 52 chr3 76682494 76682712 -141354446 - MLT1I LTR MaLR -4 405 127 2562 161 26 2 chr3 76682712 76683128 -141354030 + MSTA LTR MaLR 3 428 0 582 208 260 52 chr3 76683128 76683159 -141353999 - MLT1I LTR MaLR -282 127 104 329 322 8 17 chr3 76683412 76683530 -141353628 + MIR3 SINE MIR 85 201 -7 1645 262 91 14 chr3 76684546 76684974 -141352184 + MLT1E LTR MaLR 1 461 -132 189 275 66 44 chr3 76685099 76685190 -141351968 + MIR SINE MIR 27 119 -143 564 270 55 46 chr3 76685567 76685804 -141351354 + MIR SINE MIR 18 256 -6 226 318 167 1 chr3 76685877 76685998 -141351160 + MIR SINE MIR 1 130 -78 193 291 45 27 chr3 76688138 76688248 -141348910 - MIR SINE MIR -59 203 92 347 252 126 8 chr3 76688251 76688378 -141348780 - L2 LINE L2 0 3313 3172 276 343 10 10 chr3 76688369 76688471 -141348687 - MIR SINE MIR -158 104 3 * 201 243 0 0 chr3 76688605 76688642 -141348516 + polypyrimidine Low_complexity Low_complexity 2 38 0 595 316 102 33 chr3 76688689 76689148 -141348010 + MLT1J LTR MaLR 1 491 -20 560 323 82 5 chr3 76689230 76689450 -141347708 - MIR SINE MIR -12 250 14 186 71 0 0 chr3 76690023 76690051 -141347107 + (TTG)n Simple_repeat Simple_repeat 2 29 0 396 59 0 0 chr3 76690155 76690206 -141346952 + (CA)n Simple_repeat Simple_repeat 1 51 0 216 0 0 0 chr3 76690531 76690555 -141346603 + (TG)n Simple_repeat Simple_repeat 1 24 0 1122 296 109 36 chr3 76691574 76693036 -141344122 + L1P4 LINE L1 3880 5450 -716 451 260 101 38 chr3 76693107 76693468 -141343690 + LTR33A LTR ERVL 89 515 -8 700 294 65 47 chr3 76693471 76693944 -141343214 + L1ME2 LINE L1 5444 5925 -239 21 0 0 0 chr3 76694235 76694256 -141342902 + AT_rich Low_complexity Low_complexity 1 21 0 459 324 122 45 chr3 76694871 76695207 -141341951 + L2 LINE L2 2910 3271 -1 551 283 56 30 chr3 76697073 76697306 -141339852 + MIR SINE MIR 16 254 -8 371 166 7 159 chr3 76697533 76697678 -141339480 - LTR67 LTR ERVL -3 554 432 22 35 0 0 chr3 76698102 76698131 -141339027 + AT_rich Low_complexity Low_complexity 1 29 0 29 28 0 0 chr3 76698791 76698827 -141338331 + AT_rich Low_complexity Low_complexity 1 36 0 1396 162 19 98 chr3 76699813 76700172 -141336986 - MLT1B LTR MaLR 0 390 60 270 0 0 0 chr3 76700885 76700915 -141336243 + (CA)n Simple_repeat Simple_repeat 1 30 0 574 284 92 81 chr3 76702546 76702905 -141334253 + L2 LINE L2 2909 3271 -1 1044 218 0 32 chr3 76702917 76703133 -141334025 + MER3 DNA MER1_type 1 209 0 227 270 87 43 chr3 76703564 76703679 -141333479 + L2 LINE L2 3153 3272 0 863 44 0 9 chr3 76703969 76704082 -141333076 + (GAAA)n Simple_repeat Simple_repeat 1 112 0 267 242 0 30 chr3 76704475 76704541 -141332617 + CT-rich Low_complexity Low_complexity 1 64 0 290 252 0 18 chr3 76705046 76705157 -141332001 + GA-rich Low_complexity Low_complexity 3 111 0 854 240 113 49 chr3 76706605 76706808 -141330350 + Charlie1 DNA MER1_type 7 196 -2565 351 65 0 0 chr3 76706808 76706854 -141330304 + (CA)n Simple_repeat Simple_repeat 1 46 0 299 24 0 24 chr3 76706854 76706895 -141330263 + (GGGA)n Simple_repeat Simple_repeat 3 42 0 854 240 113 49 chr3 76706895 76707115 -141330043 + Charlie1 DNA MER1_type 195 1778 -983 504 153 0 0 chr3 76707132 76707204 -141329954 - FLAM SINE Alu -26 117 46 1010 140 0 6 chr3 76710081 76710245 -141326913 - L1MB4 LINE L1 -4 6176 6014 557 335 92 0 chr3 76710325 76710552 -141326606 + MIR SINE MIR 11 258 -4 806 282 84 0 chr3 76710571 76710798 -141326360 - MIR SINE MIR -15 247 2 571 218 112 21 chr3 76713759 76713934 -141323224 + MIR3 SINE MIR 21 208 0 2241 145 10 39 chr3 76714348 76714734 -141322424 + THE1C LTR MaLR 1 375 0 194 266 0 133 chr3 76715703 76715816 -141321342 + MIR SINE MIR 97 194 -68 859 201 0 24 chr3 76715827 76715991 -141321167 - MLT1B LTR MaLR 0 390 231 234 219 73 7 chr3 76716952 76717103 -141320055 + (CACAA)n Simple_repeat Simple_repeat 5 165 0 1010 140 0 6 chr3 76719844 76720008 -141317150 - L1MB4 LINE L1 -4 6176 6014 557 335 92 0 chr3 76720088 76720315 -141316843 + MIR SINE MIR 11 258 -4 806 282 84 0 chr3 76720334 76720561 -141316597 - MIR SINE MIR -15 247 2 571 218 112 21 chr3 76723522 76723697 -141313461 + MIR3 SINE MIR 21 208 0 2221 148 10 39 chr3 76724110 76724496 -141312662 + THE1C LTR MaLR 1 375 0 200 268 0 125 chr3 76725466 76725578 -141311580 + MIR SINE MIR 97 194 -68 244 217 0 72 chr3 76725589 76725658 -141311500 - MLT1B LTR MaLR 0 390 327 236 236 136 36 chr3 76725768 76725878 -141311280 - LTR48 LTR ERV1 -616 171 51 * 759 204 68 6 chr3 76725839 76726001 -141311157 - MLT1B LTR MaLR -217 173 2 4533 163 57 27 chr3 76727538 76728819 -141308339 - L1MB4 LINE L1 -1 6179 4860 1146 145 88 0 chr3 76728828 76729021 -141308137 - MER46A DNA MER2_type -1 235 26 1415 176 48 21 chr3 76729068 76729404 -141307754 - L1MB4 LINE L1 -1347 4799 4455 564 324 82 24 chr3 76729404 76729767 -141307391 + L2 LINE L2 2661 3053 -219 730 162 56 7 chr3 76729853 76729995 -141307163 - Tigger7 DNA MER2_type 0 2491 2343 * 1876 212 3 0 chr3 76729990 76730329 -141306829 - Tigger7 DNA MER2_type -389 344 5 1002 231 0 13 chr3 76731284 76731509 -141305649 + L1MA4 LINE L1 6078 6299 -1 401 331 37 12 chr3 76732749 76732912 -141304246 + MIR SINE MIR 2 168 -94 2286 108 7 0 chr3 76732955 76733261 -141303897 + AluSc SINE Alu 1 308 -1 288 219 16 154 chr3 76733269 76733392 -141303766 + MIR SINE MIR 52 157 -105 202 311 85 19 chr3 76733501 76733607 -141303551 - L2 LINE L2 -1 3271 3159 1845 127 4 4 chr3 76733899 76734166 -141302992 + AluSx SINE Alu 35 301 -11 513 361 64 48 chr3 76734603 76735041 -141302117 - L2 LINE L2 0 3272 2828 4516 106 27 2 chr3 76735297 76735921 -141301237 + MER51C LTR ERV1 1 640 0 455 232 0 30 chr3 76737868 76737967 -141299191 - MER5A DNA MER1_type -84 105 10 23 0 0 0 chr3 76738344 76738367 -141298791 + AT_rich Low_complexity Low_complexity 1 23 0 633 284 47 35 chr3 76739070 76739302 -141297856 - MIR SINE MIR -10 252 18 884 271 37 0 chr3 76739305 76739519 -141297639 + MER58A DNA MER1_type 3 224 0 585 265 66 40 chr3 76741175 76741508 -141295650 + L1ME4a LINE L1 5615 5918 -203 186 246 15 92 chr3 76742374 76742439 -141294719 + L2 LINE L2 3208 3267 -5 6438 82 38 0 chr3 76742736 76743532 -141293626 - LTR12 LTR ERV1 0 826 1 273 273 0 13 chr3 76743913 76743990 -141293168 - MER5A DNA MER1_type -71 118 43 213 339 0 0 chr3 76744061 76744123 -141293035 + L2 LINE L2 3244 3305 -8 307 250 69 0 chr3 76744491 76744563 -141292595 + MIR SINE MIR 70 146 -116 503 310 7 0 chr3 76745658 76745803 -141291355 - LTR16B LTR ERVL -317 147 2 237 368 60 15 chr3 76746661 76746794 -141290364 - L2 LINE L2 -22 3250 3112 454 320 119 5 chr3 76746825 76747044 -141290114 + MIR SINE MIR 6 249 -13 1781 195 58 0 chr3 76747080 76747408 -141289750 - MER7A DNA MER2_type 0 346 2 228 371 63 24 chr3 76747483 76747688 -141289470 - L2 LINE L2 -191 3081 2869 407 233 34 18 chr3 76748134 76748280 -141288878 - MIR SINE MIR -63 145 21 288 262 136 19 chr3 76749444 76749547 -141287611 + MER117 DNA MER1_type 22 136 -61 688 289 128 30 chr3 76750581 76750879 -141286279 - L2 LINE L2 0 3313 2987 1123 279 104 37 chr3 76750908 76751144 -141286014 - L2 LINE L2 -902 2412 2193 3476 98 2 21 chr3 76751144 76751626 -141285532 + L1PA13 LINE L1 5691 6163 0 1123 279 104 37 chr3 76751626 76751877 -141285281 - L2 LINE L2 -1121 2193 1892 305 258 98 61 chr3 76752044 76752207 -141284951 + Charlie8 DNA MER1_type 51 219 -2198 266 244 8 142 chr3 76752602 76752674 -141284484 + MER103 DNA DNA 55 104 -62 2069 125 6 16 chr3 76752674 76752986 -141284172 + AluSc SINE Alu 1 309 0 266 244 8 142 chr3 76752986 76753040 -141284118 + MER103 DNA DNA 104 164 -2 285 256 105 23 chr3 76753778 76753864 -141283294 - MIR SINE MIR -64 198 106 219 257 0 81 chr3 76753999 76754073 -141283085 - MIR SINE MIR -183 79 12 708 206 7 14 chr3 76754471 76754617 -141282541 + L1MB5 LINE L1 6021 6165 -9 1288 143 56 0 chr3 76755111 76755342 -141281816 - L1MA2 LINE L1 0 6304 6061 417 276 46 61 chr3 76756356 76756617 -141280541 - LTR16C LTR ERVL 0 491 235 890 282 63 30 chr3 76758595 76758989 -141278169 - MLT1I LTR MaLR -2 407 1 9986 152 11 4 chr3 76759052 76760714 -141276444 + L1PA13 LINE L1 3518 5191 -955 9679 36 6 1 chr3 76760712 76761844 -141275314 - L1PA4 LINE L1 -1598 4548 3423 * 8186 23 2 0 chr3 76761844 76763460 -141273698 + L1PA4 LINE L1 4538 6155 0 6285 110 19 6 chr3 76763458 76763859 -141273299 + L1PA13 LINE L1 5175 5569 -594 * 9679 36 6 1 chr3 76763460 76763859 -141273299 - L1P LINE L1 -2723 3423 3976 2405 88 0 3 chr3 76763859 76764167 -141272991 + AluY SINE Alu 1 307 -4 9679 36 6 1 chr3 76764167 76764755 -141272403 - L1P LINE L1 -2169 3977 3394 6285 110 19 6 chr3 76764167 76764738 -141272420 + L1PA13 LINE L1 5569 6159 -4 190 127 0 73 chr3 76765402 76765457 -141271701 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 453 235 82 0 chr3 76765517 76765615 -141271543 + MER58 DNA MER1_type 1 106 -2314 * 670 167 56 7 chr3 76765596 76765740 -141271418 + MER58 DNA MER1_type 2270 2420 0 195 196 87 0 chr3 76766021 76766067 -141271091 + MIR SINE MIR 111 160 -102 210 71 0 0 chr3 76766428 76766456 -141270702 + (GA)n Simple_repeat Simple_repeat 1 28 0 410 268 196 36 chr3 76766592 76766868 -141270290 - L2 LINE L2 -74 3239 2920 1560 152 105 50 chr3 76769347 76769690 -141267468 - MLT1A1 LTR MaLR 0 365 4 313 319 17 8 chr3 76769885 76770004 -141267154 + MER5A DNA MER1_type 27 146 -43 184 212 12 165 chr3 76770457 76770542 -141266616 - L2 LINE L2 -1 3312 3241 272 237 62 62 chr3 76771345 76771472 -141265686 - MLT1H LTR MaLR 0 549 441 2158 236 56 11 chr3 76772260 76772782 -141264376 - L1MD3 LINE L1 -1 7994 7450 1650 64 0 5 chr3 76773432 76773636 -141263522 + AluY SINE Alu 102 304 -7 586 311 86 24 chr3 76773678 76774086 -141263072 + LTR16B LTR ERVL 1 464 0 631 289 58 9 chr3 76774086 76774311 -141262847 + HERV16 LTR ERVL 1 236 -4760 2255 53 0 0 chr3 76774335 76774598 -141262560 + AluY SINE Alu 1 263 -48 3948 138 28 49 chr3 76774792 76775482 -141261676 + LTR8 LTR ERV1 17 691 0 456 248 32 24 chr3 76775485 76775610 -141261548 - MER21B LTR ERV1 -640 223 98 461 205 12 0 chr3 76775649 76775732 -141261426 - MER21B LTR ERV1 -767 96 13 252 0 0 0 chr3 76775757 76775785 -141261373 + (T)n Simple_repeat Simple_repeat 1 28 0 2010 130 34 0 chr3 76776875 76777168 -141259990 - AluSq SINE Alu -8 305 3 4398 179 52 16 chr3 76777178 76778190 -141258968 - L1MB8 LINE L1 0 6178 5131 705 196 37 0 chr3 76778190 76778353 -141258805 + L1M4c LINE L1 1251 1419 -4965 993 202 71 38 chr3 76778378 76778571 -141258587 + MLT1C LTR MaLR 184 390 -77 2786 101 8 11 chr3 76778571 76778947 -141258211 - THE1C LTR MaLR 0 375 1 993 202 71 38 chr3 76778947 76779020 -141258138 + MLT1C LTR MaLR 390 459 -8 546 217 26 0 chr3 76779026 76779141 -141258017 - L1M4b LINE L1 -6069 790 673 1986 151 0 3 chr3 76780368 76780659 -141256499 - AluSx SINE Alu -22 290 1 204 337 20 0 chr3 76780988 76781086 -141256072 + (CATATA)n Simple_repeat Simple_repeat 2 101 0 903 47 34 0 chr3 76781144 76781268 -141255890 + MER30B DNA MER1_type 1 112 -78 3531 125 50 2 chr3 76781268 76781838 -141255320 - MER51C LTR ERV1 0 640 1 594 177 0 0 chr3 76781838 76781934 -141255224 + MER30B DNA MER1_type 135 230 0 187 53 26 26 chr3 76782050 76782088 -141255070 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 4147 114 45 22 chr3 76782930 76783568 -141253590 - MER39B LTR ERV1 0 653 1 1163 246 13 39 chr3 76784707 76785131 -141252027 - L1M4b LINE L1 -6299 560 11 257 292 0 62 chr3 76785207 76785320 -141251838 + L2 LINE L2 2911 3016 -297 829 169 60 38 chr3 76785420 76785604 -141251554 + MER58 DNA MER1_type 82 269 -72 1390 139 36 156 chr3 76785606 76785742 -141251416 + Cheshire DNA MER1_type 2051 2202 -218 1968 148 0 40 chr3 76785742 76786066 -141251092 + AluSx SINE Alu 1 311 -1 1390 139 36 156 chr3 76786066 76786345 -141250813 + Cheshire DNA MER1_type 2202 2416 -4 775 247 193 39 chr3 76786338 76786727 -141250431 + MLT1L LTR MaLR 154 602 -13 * 400 277 188 22 chr3 76786750 76787021 -141250137 + L2 LINE L2 2992 3307 -6 28 91 0 0 chr3 76787064 76787141 -141250017 + AT_rich Low_complexity Low_complexity 1 77 0 32 0 0 0 chr3 76788035 76788067 -141249091 + AT_rich Low_complexity Low_complexity 1 32 0 2057 133 11 0 chr3 76788085 76788371 -141248787 - AluSx SINE Alu -23 289 1 776 201 120 5 chr3 76788571 76788755 -141248403 + MER3 DNA MER1_type 5 209 0 193 211 19 19 chr3 76789364 76789416 -141247742 - MIR SINE MIR -102 160 109 249 282 171 41 chr3 76790193 76790363 -141246795 + L2 LINE L2 2986 3177 -95 1085 267 8 4 chr3 76790423 76790678 -141246480 - MIR SINE MIR 0 262 7 1798 196 68 26 chr3 76791491 76791950 -141245208 + MLT1D LTR MaLR 28 505 0 199 295 116 11 chr3 76792778 76792873 -141244285 + MIR SINE MIR 79 183 -79 396 229 8 25 chr3 76793083 76793201 -141243957 - L1ME2 LINE L1 0 6164 6049 600 222 183 11 chr3 76793217 76793397 -141243761 + MER58A DNA MER1_type 1 211 -13 318 300 133 0 chr3 76793436 76793586 -141243572 - L1ME2 LINE L1 -150 6012 5843 366 269 255 0 chr3 76794317 76794458 -141242700 + MER5A DNA MER1_type 4 180 -9 419 265 54 24 chr3 76795314 76795480 -141241678 + MIR SINE MIR 21 191 -71 200 250 95 12 chr3 76795536 76795620 -141241538 + MIR SINE MIR 172 262 0 2424 144 8 5 chr3 76797019 76797407 -141239751 + L1PB1 LINE L1 5760 6148 -3 207 204 0 0 chr3 76797497 76797541 -141239617 + (TA)n Simple_repeat Simple_repeat 2 45 0 490 139 35 0 chr3 76797575 76797661 -141239497 + MER53 DNA DNA 100 188 -1 199 280 0 0 chr3 76799827 76799877 -141237281 + L2 LINE L2 3255 3304 -9 1352 177 0 4 chr3 76800780 76801006 -141236152 + AluJb SINE Alu 1 225 -87 237 178 0 0 chr3 76801015 76801060 -141236098 + A-rich Low_complexity Low_complexity 1 45 0 2062 137 25 23 chr3 76801068 76801580 -141235578 + L1MC2 LINE L1 5762 6342 -2 2234 119 0 6 chr3 76802442 76802753 -141234405 + AluSx SINE Alu 1 309 -3 382 209 95 0 chr3 76802877 76802982 -141234176 + Tigger5 DNA MER2_type 1 115 -2208 235 189 38 0 chr3 76802959 76803012 -141234146 + Tigger5 DNA MER2_type 2247 2301 -22 * 21 36 0 0 chr3 76803432 76803460 -141233698 + AT_rich Low_complexity Low_complexity 1 28 0 1896 160 87 20 chr3 76803695 76804219 -141232939 + MLT2A2 LTR ERVL 1 554 0 3846 170 57 26 chr3 76804268 76804932 -141232226 + LTR39 LTR ERV1 21 712 -71 1659 189 112 145 chr3 76804932 76805684 -141231474 - LTR8A LTR ERV1 0 727 1 3846 170 57 26 chr3 76805684 76805759 -141231399 + LTR39 LTR ERV1 712 783 0 4181 93 29 0 chr3 76805774 76806324 -141230834 + LTR14C LTR ERVK 22 587 0 1267 103 74 25 chr3 76806752 76806928 -141230230 + MSTA LTR MaLR 216 405 -23 7730 48 8 3 chr3 76806928 76808038 -141229120 - L1PA5 LINE L1 -4 6150 5040 1267 103 74 25 chr3 76808038 76808064 -141229094 + MSTA LTR MaLR 405 428 0 306 303 30 0 chr3 76808107 76808206 -141228952 - MLT1K LTR MaLR -346 242 141 410 277 182 7 chr3 76808946 76809094 -141228064 - MER5A DNA MER1_type -6 183 10 21 0 0 0 chr3 76809180 76809201 -141227957 + AT_rich Low_complexity Low_complexity 1 21 0 2399 93 0 9 chr3 76809391 76809712 -141227446 + L1PA13 LINE L1 5846 6163 0 235 148 19 37 chr3 76810413 76810467 -141226691 - MLT2C2 LTR ERVL -8 456 404 1950 197 100 23 chr3 76810500 76810941 -141226217 - MLT2B1 LTR ERVL -45 475 1 350 308 84 15 chr3 76811775 76811974 -141225184 + MIR SINE MIR 24 243 -19 1136 174 26 66 chr3 76813497 76813801 -141223357 + MER33 DNA MER1_type 31 322 -2 1538 205 70 27 chr3 76813847 76814286 -141222872 - MLT2D LTR ERVL -9 455 1 716 305 110 42 chr3 76814286 76815013 -141222145 + L2 LINE L2 2519 3313 0 21 0 0 0 chr3 76815598 76815619 -141221539 + AT_rich Low_complexity Low_complexity 1 21 0 858 200 65 30 chr3 76816097 76816297 -141220861 + L1MB2 LINE L1 5958 6164 -7 247 286 32 0 chr3 76816685 76816748 -141220410 - MIR SINE MIR -79 183 119 281 259 199 30 chr3 76818031 76818162 -141218996 - L2 LINE L2 0 3313 3161 413 299 50 17 chr3 76818433 76818629 -141218529 + MIR SINE MIR 3 204 -58 336 278 194 20 chr3 76819453 76819678 -141217480 - MIR SINE MIR -7 255 2 247 333 61 8 chr3 76819842 76819974 -141217184 + L2 LINE L2 3175 3313 0 2055 116 14 7 chr3 76820099 76820383 -141216775 + AluSc SINE Alu 3 288 -21 309 211 42 0 chr3 76820881 76820952 -141216206 - MER113 DNA MER1_type? -117 404 331 436 268 77 22 chr3 76820965 76821148 -141216010 - LTR33 LTR ERVL 0 521 329 484 294 57 14 chr3 76821197 76821408 -141215750 - LTR33 LTR ERVL -286 235 16 1093 180 92 18 chr3 76821426 76821710 -141215448 - MER113 DNA MER1_type? -211 310 6 246 267 0 0 chr3 76823419 76823479 -141213679 + MIR3 SINE MIR 112 171 -37 611 213 86 23 chr3 76823542 76823716 -141213442 + MER53 DNA DNA 5 189 0 422 259 80 25 chr3 76824133 76824295 -141212863 - MIR SINE MIR -13 249 79 654 320 101 16 chr3 76824326 76824888 -141212270 + L1ME3A LINE L1 4616 5225 -921 826 194 158 16 chr3 76824938 76825191 -141211967 + MER33 DNA MER1_type 32 320 -4 1108 289 96 33 chr3 76825195 76825745 -141211413 + L1ME3A LINE L1 5259 5843 -327 467 38 0 89 chr3 76825941 76826020 -141211138 - L1PA10 LINE L1 0 6168 6097 3025 152 82 25 chr3 76826918 76827517 -141209641 + L1MA9 LINE L1 5680 6312 0 26 0 0 0 chr3 76827551 76827577 -141209581 + AT_rich Low_complexity Low_complexity 1 26 0 2226 238 54 22 chr3 76828706 76829295 -141207863 - MLT1E2 LTR MaLR 0 626 19 376 272 59 7 chr3 76830002 76830138 -141207020 + MIR SINE MIR 80 222 -40 900 225 56 5 chr3 76830437 76830650 -141206508 - MER58A DNA MER1_type 0 224 1 459 0 0 0 chr3 76830769 76830820 -141206338 + (TG)n Simple_repeat Simple_repeat 2 52 0 2096 127 0 10 chr3 76830824 76831124 -141206034 - AluSx SINE Alu -15 297 1 2492 66 3 0 chr3 76831994 76832296 -141204862 + AluY SINE Alu 1 303 -8 1193 225 57 24 chr3 76832423 76832756 -141204402 - MER2 DNA MER2_type 0 344 1 258 32 0 0 chr3 76833525 76833556 -141203602 + (CCCTAA)n Simple_repeat Simple_repeat 6 36 0 452 127 0 13 chr3 76833781 76833860 -141203298 + (TCCA)n Simple_repeat Simple_repeat 4 81 0 356 267 123 43 chr3 76833974 76834161 -141202997 + MIR SINE MIR 18 219 -43 248 252 82 54 chr3 76834674 76834821 -141202337 - MLT1L LTR MaLR -135 480 330 222 37 0 0 chr3 76834967 76834994 -141202164 + (T)n Simple_repeat Simple_repeat 1 27 0 210 281 73 0 chr3 76835593 76835675 -141201483 + MIR SINE MIR 89 176 -86 241 300 60 20 chr3 76835690 76835790 -141201368 - L2 LINE L2 -9 3263 3160 1116 272 213 5 chr3 76837523 76837931 -141199227 + MLT1K LTR MaLR 2 494 -94 4384 174 84 57 chr3 76837938 76838610 -141198548 - L1MC3 LINE L1 -1 7784 7131 1717 172 10 14 chr3 76838610 76838906 -141198252 + AluJo SINE Alu 1 295 -17 4384 174 84 57 chr3 76838906 76839131 -141198027 - L1MC3 LINE L1 -654 7131 6852 5102 58 6 0 chr3 76839131 76839756 -141197402 - L1PA6 LINE L1 0 6154 5526 4384 174 84 57 chr3 76839756 76839909 -141197249 - L1MC3 LINE L1 -933 6852 6705 262 238 19 76 chr3 76839914 76840019 -141197139 + MLT1K LTR MaLR 488 586 -2 345 270 90 53 chr3 76840257 76840446 -141196712 + L2 LINE L2 3111 3306 -7 645 221 87 0 chr3 76841057 76841206 -141195952 - MER63A DNA MER1_type 0 210 49 209 81 0 27 chr3 76841543 76841580 -141195578 + (GA)n Simple_repeat Simple_repeat 1 36 0 228 322 0 0 chr3 76841595 76841654 -141195504 + A-rich Low_complexity Low_complexity 5 63 0 708 100 0 0 chr3 76841660 76841780 -141195378 + (GGAA)n Simple_repeat Simple_repeat 1 120 0 418 272 6 104 chr3 76841924 76842097 -141195061 - MIR SINE MIR -102 160 5 185 206 192 14 chr3 76842264 76842337 -141194821 + L2 LINE L2 3146 3231 -41 278 218 148 10 chr3 76843014 76843115 -141194043 - MIR3 SINE MIR -37 171 57 * 504 200 0 0 chr3 76843111 76843201 -141193957 - MIR SINE MIR -112 150 61 316 305 175 11 chr3 76843309 76843486 -141193672 + MIR SINE MIR 53 258 -4 259 284 86 90 chr3 76844555 76844823 -141192335 + MLT1H LTR MaLR 117 383 -166 570 302 29 5 chr3 76845356 76845561 -141191597 + MIR SINE MIR 3 212 -50 1615 176 85 16 chr3 76845939 76846169 -141190989 - MLT1B LTR MaLR -2 388 122 399 16 0 48 chr3 76846169 76846232 -141190926 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 1615 176 85 16 chr3 76846232 76846364 -141190794 - MLT1B LTR MaLR -268 122 1 246 305 134 18 chr3 76846965 76847129 -141190029 + L3b LINE CR1 1143 1325 -258 407 311 6 30 chr3 76848550 76848717 -141188441 - MER103 DNA DNA -2 164 2 1045 122 0 7 chr3 76848717 76848903 -141188255 - AluSp SINE Alu 0 324 140 1065 165 12 0 chr3 76850677 76850847 -141186311 - MER45A DNA AcHobo -1 177 6 189 0 0 0 chr3 76850881 76850902 -141186256 + (TC)n Simple_repeat Simple_repeat 1 21 0 328 305 43 30 chr3 76851328 76851492 -141185666 - MIR SINE MIR -4 258 93 200 208 21 0 chr3 76851598 76851646 -141185512 + L2 LINE L2 3265 3313 0 234 105 0 0 chr3 76851893 76851931 -141185227 + (AATTG)n Simple_repeat Simple_repeat 3 40 0 44467 44 3 2 chr3 76853725 76854750 -141182408 - L1PA4 LINE L1 -1 6154 5132 2856 19 0 0 chr3 76854750 76855058 -141182100 - AluYb8 SINE Alu -10 308 1 44467 44 3 2 chr3 76855058 76860183 -141176975 - L1PA4 LINE L1 -1023 5132 2 450 299 64 55 chr3 76861785 76862129 -141175029 + L2 LINE L2 2967 3313 0 841 210 42 72 chr3 76862264 76862597 -141174561 + L1MC5 LINE L1 6893 7215 -746 480 260 9 91 chr3 76863328 76863559 -141173599 + L1ME1 LINE L1 783 994 -5415 3464 240 22 30 chr3 76863562 76863752 -141173406 + L1ME1 LINE L1 5069 5259 -1167 3714 66 7 83 chr3 76863752 76863900 -141173258 + L1MA1 LINE L1 5756 5914 -388 1632 176 3 42 chr3 76863900 76864213 -141172945 - AluSx SINE Alu -11 301 1 3714 66 7 83 chr3 76864213 76864656 -141172502 + L1MA1 LINE L1 5914 6302 0 3464 240 22 30 chr3 76864656 76865662 -141171496 + L1ME1 LINE L1 5259 6407 -19 2241 109 7 3 chr3 76865734 76866036 -141171122 + AluSc SINE Alu 1 303 -6 2061 209 107 21 chr3 76866534 76867056 -141170102 + MLT1F1 LTR MaLR 1 567 0 360 363 39 17 chr3 76869192 76869426 -141167732 - L3 LINE CR1 -75 1502 1264 4247 144 40 55 chr3 76869514 76870311 -141166847 - LTR1 LTR ERV1 0 785 1 293 260 24 16 chr3 76872132 76872255 -141164903 + LTR67 LTR ERVL 428 551 -6 434 172 10 0 chr3 76873367 76873466 -141163692 + GA-rich Low_complexity Low_complexity 3 102 0 297 0 0 0 chr3 76873902 76873935 -141163223 + (CA)n Simple_repeat Simple_repeat 2 34 0 738 254 54 5 chr3 76874724 76874909 -141162249 - MIR SINE MIR -33 229 36 842 238 73 137 chr3 76875405 76876035 -141161123 + MLT1G LTR MaLR 1 590 0 260 19 19 58 chr3 76876127 76876179 -141160979 + (TA)n Simple_repeat Simple_repeat 1 50 0 3054 186 26 9 chr3 76877212 76877869 -141159289 + L1MA9 LINE L1 5461 6128 -184 289 301 115 47 chr3 76878136 76878335 -141158823 - MIR SINE MIR -29 233 16 266 330 87 9 chr3 76880964 76881079 -141156079 + MIR SINE MIR 60 183 -79 297 283 192 0 chr3 76882256 76882355 -141154803 - L2 LINE L2 -11 3302 3185 931 297 153 20 chr3 76882869 76883487 -141153671 + L2 LINE L2 2612 3312 -1 891 118 30 209 chr3 76883653 76883732 -141153426 + MER33 DNA MER1_type 47 139 -2446 5056 24 0 0 chr3 76883732 76884317 -141152841 + L1PA3 LINE L1 5571 6155 0 891 118 30 209 chr3 76884317 76884576 -141152582 + MER33 DNA MER1_type 139 324 0 246 343 69 11 chr3 76884625 76884800 -141152358 + MIR SINE MIR 20 204 -58 259 310 70 64 chr3 76885209 76885380 -141151778 - MER5B DNA MER1_type -2 176 5 992 39 77 8 chr3 76885602 76885732 -141151426 + MER85 DNA T2_type 1 139 0 2262 128 64 24 chr3 76885855 76886278 -141150880 - L1MC1 LINE L1 -8 6325 5886 577 231 0 25 chr3 76886400 76886468 -141150690 + L1MA10 LINE L1 6179 6247 -87 1716 179 62 0 chr3 76886468 76886792 -141150366 + MER2 DNA MER2_type 1 344 0 577 231 0 25 chr3 76886792 76886883 -141150275 + L1MA10 LINE L1 6247 6334 0 355 260 167 44 chr3 76886922 76887126 -141150032 + MIR SINE MIR 23 251 -11 2208 122 6 6 chr3 76887463 76887775 -141149383 + AluSx SINE Alu 1 312 0 2399 132 6 3 chr3 76888029 76888392 -141148766 - THE1B LTR MaLR 0 364 1 999 315 112 36 chr3 76890753 76891315 -141145843 - L3 LINE CR1 -11 1566 962 845 270 42 5 chr3 76891341 76891556 -141145602 + MIR SINE MIR 38 260 -2 504 339 62 0 chr3 76891605 76891797 -141145361 - L3 LINE CR1 -768 809 606 289 384 62 0 chr3 76891861 76892007 -141145151 - MIR3 SINE MIR -39 169 15 558 290 29 14 chr3 76892084 76892273 -141144885 + MIR SINE MIR 13 202 -60 204 40 0 0 chr3 76892879 76892904 -141144254 + (TTA)n Simple_repeat Simple_repeat 1 25 0 397 241 128 28 chr3 76894246 76894387 -141142771 + L2 LINE L2 3159 3313 0 513 143 12 0 chr3 76894654 76894738 -141142420 + MER5B DNA MER1_type 94 178 0 268 326 28 108 chr3 76896642 76896967 -141140191 + L2 LINE L2 2882 3180 -92 395 204 0 0 chr3 76899075 76899173 -141137985 - MER117 DNA MER1_type -52 145 48 262 337 103 56 chr3 76899496 76899870 -141137288 - L2 LINE L2 -173 3099 2716 228 280 0 0 chr3 76900278 76900328 -141136830 + polypurine Low_complexity Low_complexity 1 50 0 293 310 132 0 chr3 76900399 76900528 -141136630 - MIR SINE MIR -6 256 111 1535 201 13 48 chr3 76902260 76902638 -141134520 - MLT1A1 LTR MaLR 0 365 1 682 287 178 27 chr3 76903363 76903839 -141133319 - MLT1G1 LTR MaLR 0 595 21 1149 306 81 10 chr3 76905265 76905958 -141131200 + HAL1b LINE L1 216 957 -391 521 361 35 47 chr3 76906218 76906622 -141130536 + L1MEc LINE L1 274 672 -5724 2026 119 51 0 chr3 76906632 76906925 -141130233 - AluSx SINE Alu -4 308 1 909 293 47 16 chr3 76906983 76907582 -141129576 + L1MEc LINE L1 723 1208 -5009 * 1006 272 106 30 chr3 76907575 76908303 -141128855 + L1MEc LINE L1 1541 2323 -4073 40362 52 1 3 chr3 76908326 76914491 -141122667 + L1PA4 LINE L1 3 6155 0 2607 219 150 58 chr3 76914493 76915857 -141121301 + L1MEc LINE L1 2271 3759 -2456 608 265 9 9 chr3 76915888 76916099 -141121059 + L1PB1 LINE L1 6 216 -6647 * 13960 185 21 15 chr3 76916076 76920897 -141116261 + L1PB1 LINE L1 1392 6206 -661 2079 145 0 16 chr3 76920897 76921214 -141115944 + AluSx SINE Alu 1 312 0 13960 185 21 15 chr3 76921214 76921872 -141115286 + L1PB1 LINE L1 6206 6859 -8 1480 256 14 29 chr3 76921871 76922433 -141114725 + L1MEc LINE L1 3738 4291 -1924 * 594 257 0 49 chr3 76922514 76922697 -141114461 + LTR41 LTR ERVL 2 175 -598 881 189 16 11 chr3 76922992 76923183 -141113975 + MLT1A1 LTR MaLR 173 364 -1 378 196 0 142 chr3 76923199 76923403 -141113755 + LTR41 LTR ERVL 585 759 -14 3245 225 47 24 chr3 76923412 76924503 -141112655 + L1MEc LINE L1 4356 5471 -744 264 30 0 0 chr3 76924650 76924683 -141112475 + (CAGAGA)n Simple_repeat Simple_repeat 2 34 0 1239 288 51 14 chr3 76924914 76925554 -141111604 - L1ME3A LINE L1 -223 5947 5281 371 276 8 8 chr3 76925658 76925781 -141111377 - L1MC/D LINE L1 -2002 5806 5684 384 288 99 0 chr3 76926050 76926262 -141110896 - L1MC4 LINE L1 -27 8015 7783 1905 157 18 18 chr3 76926642 76927024 -141110134 + L1MA8 LINE L1 5890 6271 -20 21 36 0 0 chr3 76927024 76927052 -141110106 + AT_rich Low_complexity Low_complexity 1 28 0 224 426 28 0 chr3 76929317 76929425 -141107733 - MIR SINE MIR -62 146 36 1218 204 4 9 chr3 76929494 76929719 -141107439 - MER58A DNA MER1_type 0 224 1 263 274 196 10 chr3 76929940 76930042 -141107116 + MIR SINE MIR 29 149 -113 236 297 40 59 chr3 76930593 76930694 -141106464 + MIR SINE MIR 33 131 -77 284 222 16 0 chr3 76930904 76930967 -141106191 + MER113 DNA MER1_type? 458 521 0 2223 112 0 0 chr3 76931281 76931594 -141105564 + AluSq SINE Alu 1 313 0 476 283 57 25 chr3 76932612 76932771 -141104387 - MIR SINE MIR -65 197 34 194 218 0 18 chr3 76934153 76934208 -141102950 + CT-rich Low_complexity Low_complexity 3 56 0 1322 99 0 0 chr3 76934214 76934385 -141102773 - AluSq SINE Alu -5 308 138 696 309 49 8 chr3 76934501 76934744 -141102414 + MIR SINE MIR 9 261 -1 2162 162 14 43 chr3 76934771 76935215 -141101943 - LTR3 LTR ERVK -1 431 1 1682 145 0 0 chr3 76935541 76935783 -141101375 - AluSx SINE Alu -16 296 55 238 241 135 63 chr3 76936230 76936437 -141100721 - L1 LINE L1 -1131 5015 4794 297 0 0 0 chr3 76936693 76936726 -141100432 + (TG)n Simple_repeat Simple_repeat 2 34 0 616 319 33 9 chr3 76936748 76936961 -141100197 + MIR SINE MIR 14 231 -31 189 230 42 18 chr3 76938277 76938442 -141098716 + CT-rich Low_complexity Low_complexity 2 170 0 230 320 156 0 chr3 76939331 76939453 -141097705 - MIR SINE MIR -10 252 112 394 267 12 0 chr3 76939516 76939602 -141097556 + L2 LINE L2 3225 3311 -2 232 240 20 0 chr3 76939601 76939651 -141097507 - MIR SINE MIR -187 75 25 * 1020 166 16 16 chr3 76939714 76939901 -141097257 - MER5A DNA MER1_type -2 187 1 319 287 79 73 chr3 76940110 76940274 -141096884 + MIR SINE MIR 47 211 -51 480 314 142 39 chr3 76941283 76942146 -141095012 - L2 LINE L2 -2 3311 2362 1783 137 121 48 chr3 76942583 76942956 -141094202 + MSTA LTR MaLR 1 400 -28 1862 144 0 0 chr3 76942963 76943234 -141093924 - AluSx SINE Alu 0 312 42 325 250 0 40 chr3 76943261 76943337 -141093821 - MER5A DNA MER1_type -86 103 31 334 225 101 0 chr3 76943355 76943444 -141093714 - MIR SINE MIR -59 203 106 355 111 0 0 chr3 76943728 76943800 -141093358 - L1ME2 LINE L1 0 6162 6091 293 94 0 0 chr3 76943794 76943847 -141093311 - L1ME3 LINE L1 -1 6161 6109 * 229 108 0 0 chr3 76943863 76943900 -141093258 - MER3 DNA MER1_type -160 49 13 262 185 109 22 chr3 76943944 76944036 -141093122 - L1ME3 LINE L1 -222 5940 5841 369 0 0 0 chr3 76944475 76944516 -141092642 + (CA)n Simple_repeat Simple_repeat 2 42 0 390 162 0 0 chr3 76944795 76944869 -141092289 + (CA)n Simple_repeat Simple_repeat 2 75 0 301 267 133 0 chr3 76945241 76945331 -141091827 + L2 LINE L2 3169 3270 -2 774 290 77 45 chr3 76945914 76946290 -141090868 + L2 LINE L2 2885 3272 0 494 262 70 73 chr3 76946930 76947274 -141089884 + MLT1H LTR MaLR 13 355 -194 490 296 39 17 chr3 76947370 76947549 -141089609 + MIR SINE MIR 77 259 -3 1279 212 25 50 chr3 76947695 76948058 -141089100 + MLT1A1 LTR MaLR 1 354 -11 272 325 142 18 chr3 76949661 76949830 -141087328 + MIR SINE MIR 14 203 -59 951 262 21 8 chr3 76949851 76950088 -141087070 - MIR SINE MIR -20 242 3 285 209 9 17 chr3 76950193 76950308 -141086850 + (TA)n Simple_repeat Simple_repeat 1 114 0 208 202 36 12 chr3 76950331 76950499 -141086659 + (TA)n Simple_repeat Simple_repeat 2 173 0 366 23 0 0 chr3 76950502 76950545 -141086613 + (CA)n Simple_repeat Simple_repeat 2 44 0 246 264 108 78 chr3 76951052 76951219 -141085939 + MER5A DNA MER1_type 4 175 -14 296 194 65 0 chr3 76952142 76952204 -141084954 + L2 LINE L2 3207 3272 0 1676 146 93 0 chr3 76952440 76952708 -141084450 + AluSq SINE Alu 3 295 -18 338 282 0 0 chr3 76953117 76953188 -141083970 - L2 LINE L2 -10 3303 3233 474 258 30 112 chr3 76953318 76953585 -141083573 - L2 LINE L2 -519 2795 2551 702 239 90 5 chr3 76953621 76953822 -141083336 - MIR SINE MIR -32 230 13 234 338 66 29 chr3 76954772 76954908 -141082250 - L2 LINE L2 -36 3236 3096 254 221 35 81 chr3 76955512 76955598 -141081560 + L2 LINE L2 2639 2720 -594 1262 158 0 19 chr3 76955598 76955813 -141081345 + AluJo SINE Alu 102 312 0 210 71 0 0 chr3 76955831 76955859 -141081299 + (CAA)n Simple_repeat Simple_repeat 3 30 0 367 282 225 30 chr3 76955895 76956149 -141081009 + L2 LINE L2 2804 3007 -306 2087 82 0 4 chr3 76956149 76956419 -141080739 - AluY SINE Alu -3 308 40 367 282 225 30 chr3 76956419 76956590 -141080568 + L2 LINE L2 3007 3312 -1 1781 154 26 29 chr3 76956594 76956939 -141080219 - MER2 DNA MER2_type 0 344 1 624 294 12 6 chr3 76958574 76958744 -141078414 - MIR SINE MIR -81 181 11 290 45 23 0 chr3 76959147 76959191 -141077967 + (TA)n Simple_repeat Simple_repeat 2 46 0 239 330 90 30 chr3 76960189 76960289 -141076869 + MIR SINE MIR 16 121 -87 21 0 0 0 chr3 76961311 76961332 -141075826 + AT_rich Low_complexity Low_complexity 1 21 0 546 321 60 60 chr3 76962696 76962998 -141074160 + L2 LINE L2 2953 3254 -18 252 300 22 0 chr3 76963060 76963150 -141074008 - MIR SINE MIR -1 261 170 312 272 267 5 chr3 76963216 76963375 -141073783 - MIR SINE MIR -67 141 4 2784 219 32 19 chr3 76963458 76964511 -141072647 + L1ME2 LINE L1 4940 6012 -152 338 222 0 0 chr3 76964529 76964610 -141072548 + L1ME2 LINE L1 6082 6162 -2 360 326 17 17 chr3 76965388 76965566 -141071592 + MLT1J LTR MaLR 237 414 -97 26 0 0 0 chr3 76965798 76965824 -141071334 + AT_rich Low_complexity Low_complexity 1 26 0 189 0 0 0 chr3 76965856 76965877 -141071281 + (GA)n Simple_repeat Simple_repeat 1 21 0 * 414 0 0 0 chr3 76965876 76965922 -141071236 + (TG)n Simple_repeat Simple_repeat 2 47 0 249 333 26 13 chr3 76966621 76966655 -141070503 + MER5A DNA MER1_type 81 113 -76 630 270 62 77 chr3 76966655 76967173 -141069985 + MLT1J LTR MaLR 2 511 0 249 333 26 13 chr3 76967173 76967216 -141069942 + MER5A DNA MER1_type 113 159 -30 * 1296 253 123 45 chr3 76967214 76967237 -141069921 + L2 LINE L2 2312 2332 -981 1751 182 0 16 chr3 76967237 76967544 -141069614 + AluJb SINE Alu 1 302 -10 1296 253 123 45 chr3 76967544 76968449 -141068709 + L2 LINE L2 2332 3311 -2 207 283 0 17 chr3 76969785 76969845 -141067313 - L2 LINE L2 -5 3267 3209 255 338 181 0 chr3 76969903 76970036 -141067122 + L2 LINE L2 3104 3260 -12 358 354 22 0 chr3 76970041 76970270 -141066888 + L1PA12 LINE L1 7 240 -7341 1271 98 26 0 chr3 76970290 76970484 -141066674 - THE1A-int LTR MaLR -1381 199 1 239 135 0 0 chr3 76970487 76970524 -141066634 - THE1A LTR MaLR -3 352 316 4634 216 14 6 chr3 76970691 76971828 -141065330 - L1PA13 LINE L1 -2317 4480 3335 1229 163 40 4 chr3 76971828 76972055 -141065103 - L1PA13 LINE L1 -4645 2142 1908 11051 92 3 1 chr3 76972656 76974089 -141063069 + THE1B-int LTR MaLR 145 1580 0 2323 138 19 38 chr3 76974089 76974460 -141062698 + THE1B LTR MaLR 1 364 0 5980 134 9 1 chr3 76974460 76975980 -141061178 + L1PA15 LINE L1 4679 6160 -5 189 0 0 0 chr3 76976377 76976398 -141060760 + (TTTAA)n Simple_repeat Simple_repeat 4 24 0 292 278 102 9 chr3 76976512 76976620 -141060538 - MIR SINE MIR -45 217 100 2305 220 122 16 chr3 76977389 76977953 -141059205 + MLT1E2 LTR MaLR 1 624 -2 26 0 0 0 chr3 76979961 76979987 -141057171 + AT_rich Low_complexity Low_complexity 1 26 0 662 322 134 36 chr3 76980023 76980642 -141056516 - L2 LINE L2 -229 3084 2366 520 264 82 25 chr3 76980705 76980864 -141056294 - MIR SINE MIR -65 197 30 385 320 36 26 chr3 76981617 76981811 -141055347 - MIR SINE MIR -65 197 2 915 256 89 11 chr3 76984576 76984857 -141052301 + LTR16A LTR ERVL 139 441 -9 768 268 78 20 chr3 76985659 76985881 -141051277 - MIR SINE MIR -10 252 21 2333 115 0 0 chr3 76986963 76987267 -141049891 + AluSx SINE Alu 1 304 -8 326 61 20 0 chr3 76988645 76988694 -141048464 + (CA)n Simple_repeat Simple_repeat 1 50 0 301 333 0 0 chr3 76988752 76988839 -141048319 - L2 LINE L2 -12 3301 3215 726 144 87 113 chr3 76988866 76988906 -141048252 + ORSL DNA AcHobo 51 91 -184 2385 95 0 3 chr3 76988906 76989210 -141047948 + AluSc SINE Alu 1 303 -6 726 144 87 113 chr3 76989210 76989398 -141047760 + ORSL DNA AcHobo 91 273 -2 558 290 224 16 chr3 76989403 76990054 -141047104 - L2 LINE L2 -92 3221 2432 849 193 0 0 chr3 76990491 76990631 -141046527 + FLAM_C SINE Alu 2 141 -2 629 313 100 8 chr3 76990865 76991105 -141046053 - MIR SINE MIR 0 262 1 493 362 41 22 chr3 76991130 76991497 -141045661 + L2 LINE L2 2266 2639 -675 269 167 21 0 chr3 76991554 76991602 -141045556 + MER117 DNA MER1_type 104 152 -45 207 318 15 15 chr3 76991637 76991703 -141045455 + L2 LINE L2 3206 3271 -1 1164 62 0 0 chr3 76992990 76993134 -141044024 + AluY SINE Alu 157 300 -11 42 48 0 0 chr3 76993809 76993872 -141043286 + AT_rich Low_complexity Low_complexity 1 63 0 1402 257 92 19 chr3 76994066 76994587 -141042571 + L2 LINE L2 2393 2951 -363 887 306 88 20 chr3 76994587 76994995 -141042163 - LTR16B LTR ERVL 0 464 29 1283 254 42 14 chr3 76995007 76995365 -141041793 + L2 LINE L2 2945 3312 -1 286 348 98 0 chr3 76995788 76995992 -141041166 - LTR16C LTR ERVL -12 479 256 306 267 139 22 chr3 77048091 77048271 -140988887 + L1M2 LINE L1 2621 2821 -4028 1743 117 26 15 chr3 77051368 77051641 -140985517 + AluSc SINE Alu 4 279 -30 1292 255 77 61 chr3 77051790 77052825 -140984333 + L1MC4 LINE L1 6991 8042 0 22 0 0 0 chr3 77053216 77053238 -140983920 + AT_rich Low_complexity Low_complexity 1 22 0 2388 176 48 25 chr3 77053928 77054711 -140982447 - L1M3 LINE L1 -344 5824 5016 7028 56 3 3 chr3 77054719 77055763 -140981395 - L1PA6 LINE L1 -10 6144 5104 1493 113 47 27 chr3 77056128 77056384 -140980774 + L1PB3 LINE L1 5893 6153 -1 28 0 0 0 chr3 77056384 77056412 -140980746 + AT_rich Low_complexity Low_complexity 1 28 0 1651 273 47 14 chr3 77056656 77057344 -140979814 + HAL1 LINE L1 1423 2132 -375 527 178 28 0 chr3 77057774 77057881 -140979277 + MER34 LTR ERV1 413 522 -20 1778 132 68 4 chr3 77057881 77058161 -140978997 + AluSx SINE Alu 1 298 -14 2081 154 5 15 chr3 77058210 77058599 -140978559 + L1MB3 LINE L1 5790 6174 -9 442 260 112 18 chr3 77058599 77058822 -140978336 - L1ME3A LINE L1 -183 5987 5744 261 0 0 0 chr3 77058882 77058911 -140978247 + (TA)n Simple_repeat Simple_repeat 1 29 0 916 224 35 47 chr3 77059221 77059538 -140977620 - MLT1A2 LTR MaLR -61 313 1 190 293 0 0 chr3 77059602 77059643 -140977515 + L2 LINE L2 3231 3271 -1 289 194 97 32 chr3 77060017 77060110 -140977048 - MLT1I LTR MaLR -251 158 60 2553 54 0 0 chr3 77060131 77060427 -140976731 + AluY SINE Alu 16 311 0 193 345 0 0 chr3 77061298 77061353 -140975805 + L2 LINE L2 3207 3261 -11 281 346 11 11 chr3 77061515 77061697 -140975461 - L1ME4a LINE L1 -206 5915 5734 21 0 0 0 chr3 77062319 77062340 -140974818 + AT_rich Low_complexity Low_complexity 1 21 0 503 248 132 64 chr3 77062622 77062786 -140974372 - HAL1 LINE L1 -699 1808 1657 1786 180 3 0 chr3 77062786 77063081 -140974077 - AluJo SINE Alu -16 296 1 503 248 132 64 chr3 77063081 77063211 -140973947 - HAL1 LINE L1 -850 1657 1494 396 306 101 11 chr3 77063528 77063910 -140973248 - L1M4 LINE L1 -1312 3307 883 685 160 15 8 chr3 77063924 77064055 -140973103 - AluSg1 SINE Alu -177 132 1 42 57 0 0 chr3 77064055 77064125 -140973033 + AT_rich Low_complexity Low_complexity 1 70 0 1052 140 27 0 chr3 77064143 77064329 -140972829 - L1MA4 LINE L1 -11 6289 6099 582 62 103 0 chr3 77064329 77064426 -140972732 + MER11A LTR ERVK 1 107 -1159 276 29 0 0 chr3 77064427 77064461 -140972697 + MER11A LTR ERVK 1233 1266 0 3362 140 54 5 chr3 77064461 77065076 -140972082 - L1MA4 LINE L1 -196 6104 5460 1722 89 8 0 chr3 77065081 77065329 -140971829 - L1MA3 LINE L1 -10 6295 6046 2917 13 0 0 chr3 77065342 77065660 -140971498 - AluYb8 SINE Alu 0 318 1 274 185 92 0 chr3 77066297 77066362 -140970796 - L1M4c LINE L1 -4983 1401 1331 1298 172 10 82 chr3 77066368 77066659 -140970499 - AluJo SINE Alu -9 303 34 305 233 0 0 chr3 77066677 77066737 -140970421 - AluJ/FLAM SINE Alu -242 60 1 6357 166 23 19 chr3 77066737 77068033 -140969125 - L1M4c LINE L1 -5040 1344 43 587 83 21 90 chr3 77068144 77068288 -140968870 + L1MA10 LINE L1 6199 6332 -2 890 283 42 73 chr3 77068290 77069127 -140968031 + L1MEc LINE L1 1634 2444 -3952 1032 259 78 54 chr3 77069494 77069958 -140967200 - MER21B LTR ERV1 -69 794 320 1223 223 167 35 chr3 77070750 77071181 -140965977 - MLT1D LTR MaLR -17 488 1 225 0 0 0 chr3 77071868 77071893 -140965265 + (A)n Simple_repeat Simple_repeat 1 25 0 2231 82 7 30 chr3 77072076 77072381 -140964777 - AluY SINE Alu -13 298 1 319 265 102 42 chr3 77074370 77074527 -140962631 + L2 LINE L2 3133 3302 -11 180 111 0 0 chr3 77074527 77074554 -140962604 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 2384 111 28 22 chr3 77074779 77075139 -140962019 + THE1B LTR MaLR 3 364 0 2877 85 15 1 chr3 77075139 77075715 -140961443 + THE1B-int LTR MaLR 1 617 -963 578 328 159 10 chr3 77075978 77076280 -140960878 + HAL1 LINE L1 420 766 -1741 2848 3 0 10 chr3 77076376 77076690 -140960468 - AluYa5 SINE Alu 0 311 1 393 102 0 0 chr3 77077011 77077070 -140960088 + (TG)n Simple_repeat Simple_repeat 2 60 0 408 289 1 0 chr3 77077710 77077824 -140959334 - L1M3 LINE L1 -535 5635 5528 21 82 0 0 chr3 77079032 77079081 -140958077 + AT_rich Low_complexity Low_complexity 1 49 0 1005 196 11 78 chr3 77079291 77079562 -140957596 - L1MC2 LINE L1 -160 6184 5932 317 49 0 0 chr3 77080928 77080969 -140956189 - MADE1 DNA Mariner -8 72 32 322 243 126 10 chr3 77081011 77081114 -140956044 + MIR SINE MIR 53 167 -95 397 224 164 50 chr3 77081206 77081425 -140955733 + L1MC4a LINE L1 5923 6166 -1642 264 298 167 9 chr3 77083014 77083128 -140954030 + L2 LINE L2 2921 3052 -261 285 339 111 6 chr3 77084121 77084292 -140952866 + MIR SINE MIR 17 205 -57 203 171 0 0 chr3 77084708 77084743 -140952415 + (CA)n Simple_repeat Simple_repeat 2 36 0 8960 164 69 12 chr3 77085254 77087665 -140949493 + L1PBa LINE L1 474 3178 -3684 1851 150 29 32 chr3 77087807 77088120 -140949038 - AluJb SINE Alu 0 312 1 377 150 0 0 chr3 77088566 77088626 -140948532 - L3 LINE CR1 -1082 495 436 286 341 0 11 chr3 77088690 77088778 -140948380 - L2 LINE L2 0 3272 3186 190 289 105 40 chr3 77089239 77089315 -140947843 - L2 LINE L2 -24 3248 3168 569 237 48 2 chr3 77089346 77089494 -140947664 - MIR SINE MIR -66 142 38 1511 224 0 3 chr3 77089592 77089887 -140947271 + AluJb SINE Alu 11 304 -8 1992 211 42 20 chr3 77090307 77090801 -140946357 - MLT1D LTR MaLR 0 505 1 520 281 110 23 chr3 77091073 77091293 -140945865 + MIR SINE MIR 5 256 -6 205 176 0 98 chr3 77091728 77091779 -140945379 - L2 LINE L2 -95 3218 3173 212 196 0 22 chr3 77092072 77092118 -140945040 + GA-rich Low_complexity Low_complexity 4 48 0 291 20 0 59 chr3 77092121 77092172 -140944986 + (GGAA)n Simple_repeat Simple_repeat 2 49 0 976 245 88 0 chr3 77092436 77092697 -140944461 + MER63B DNA MER1_type 1 284 -152 301 260 116 44 chr3 77093338 77093519 -140943639 + L1ME LINE L1 5559 5752 -369 481 252 60 33 chr3 77093644 77093795 -140943363 - L2 LINE L2 0 3313 3159 24 0 0 0 chr3 77093871 77093895 -140943263 + AT_rich Low_complexity Low_complexity 1 24 0 197 241 43 78 chr3 77094136 77094252 -140942906 - L3 LINE CR1 -1123 454 343 2211 147 57 8 chr3 77094300 77094687 -140942471 + MSTB1 LTR MaLR 1 406 -26 281 207 183 0 chr3 77094692 77094774 -140942384 + L2 LINE L2 2471 2567 -747 2074 205 29 51 chr3 77094777 77095290 -140941868 + LTR40a LTR ERVL 3 504 -15 947 175 17 6 chr3 77095320 77095497 -140941661 - AluJb SINE Alu 0 312 134 1140 284 108 49 chr3 77095518 77096234 -140940924 + L2 LINE L2 2563 3313 0 461 275 94 0 chr3 77096255 77096393 -140940765 + MIR SINE MIR 63 213 -49 207 338 0 0 chr3 77096551 77096619 -140940539 + L2 LINE L2 3193 3260 -12 590 268 140 13 chr3 77096821 77097049 -140940109 - L1MC4 LINE L1 -1056 6986 6730 2713 241 73 87 chr3 77097052 77097670 -140939488 - L1MC5 LINE L1 -304 7657 7032 2171 130 3 0 chr3 77097670 77097977 -140939181 + AluSx SINE Alu 1 308 -4 2713 241 73 87 chr3 77097977 77099076 -140938082 - L1MC5 LINE L1 -929 7032 5919 2228 123 0 3 chr3 77099076 77099386 -140937772 - AluSg SINE Alu -1 309 1 2713 241 73 87 chr3 77099386 77099413 -140937745 - L1MC5 LINE L1 -2042 5919 5893 2103 177 18 18 chr3 77099413 77099808 -140937350 - MSTD LTR MaLR 0 396 2 2713 241 73 87 chr3 77099808 77100040 -140937118 - L1MC5 LINE L1 -2068 5893 5696 564 294 60 11 chr3 77100059 77100243 -140936915 + L2 LINE L2 2306 2498 -816 412 311 45 0 chr3 77100250 77100382 -140936776 + L2 LINE L2 2722 2859 -455 340 106 0 0 chr3 77100384 77100431 -140936727 - MSTB2 LTR MaLR 0 457 411 662 39 0 0 chr3 77100436 77100549 -140936609 - AluSp/q SINE Alu 0 322 210 2227 194 40 0 chr3 77100550 77100952 -140936206 - MSTB2 LTR MaLR -39 418 1 575 289 52 52 chr3 77100952 77101188 -140935970 + L2 LINE L2 2858 3096 -217 2287 77 56 0 chr3 77101188 77101475 -140935683 - AluSc SINE Alu -6 303 1 575 289 52 52 chr3 77101475 77101529 -140935629 + L2 LINE L2 3095 3148 -165 213 94 0 0 chr3 77101534 77101566 -140935592 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 204 40 0 0 chr3 77101641 77101666 -140935492 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 553 354 115 33 chr3 77102431 77103200 -140933958 + L2 LINE L2 2423 3266 -6 227 320 94 16 chr3 77103202 77103330 -140933828 + L3b LINE CR1 1315 1452 -131 1181 201 74 13 chr3 77103365 77103663 -140933495 + MER33 DNA MER1_type 1 316 -8 1205 207 16 115 chr3 77103692 77104074 -140933084 + MLT1A1 LTR MaLR 3 346 -19 180 0 0 0 chr3 77104667 77104687 -140932471 + (T)n Simple_repeat Simple_repeat 1 20 0 3513 74 15 0 chr3 77104688 77105148 -140932010 - MER41A LTR ERV1 -87 467 1 4947 88 8 1 chr3 77105148 77105810 -140931348 - MER41A-int LTR ERV1 -2 5944 5279 1019 50 29 7 chr3 77105804 77105943 -140931215 - MER41-int LTR ERV1 -3461 2802 2661 * 360 257 71 0 chr3 77105942 77106055 -140931103 - MER41-int LTR ERV1 -1720 4226 4106 * 31 26 0 0 chr3 77106618 77106656 -140930502 + AT_rich Low_complexity Low_complexity 1 38 0 646 272 51 12 chr3 77106843 77107097 -140930061 + L1ME LINE L1 5553 5816 -305 24 77 0 0 chr3 77107097 77107149 -140930009 + AT_rich Low_complexity Low_complexity 1 52 0 2427 65 0 7 chr3 77107166 77107474 -140929684 + AluY SINE Alu 1 306 -5 2222 88 10 3 chr3 77107820 77108116 -140929042 - AluSg SINE Alu -12 298 1 232 299 0 0 chr3 77109630 77109707 -140927451 - MER103 DNA DNA -18 148 72 1202 199 39 0 chr3 77109811 77110126 -140927032 - MER33 DNA MER1_type -5 319 1 410 289 0 10 chr3 77110332 77110436 -140926722 + L2 LINE L2 3208 3310 -3 936 257 14 11 chr3 77110574 77110854 -140926304 + L1MB5 LINE L1 33 313 -6550 5085 181 56 29 chr3 77110961 77112434 -140924724 + L1MB5 LINE L1 1990 3517 -3345 1871 201 31 11 chr3 77112438 77112891 -140924267 + L1MB5 LINE L1 5022 5483 -1379 1801 185 11 6 chr3 77112897 77113402 -140923756 + L1MB5 LINE L1 5676 6181 -715 32 57 0 0 chr3 77113463 77113516 -140923642 + AT_rich Low_complexity Low_complexity 1 53 0 587 313 74 27 chr3 77113523 77113929 -140923229 + L1MCc LINE L1 39 463 -5960 1641 191 3 3 chr3 77114052 77114366 -140922792 + L1MB5 LINE L1 6571 6884 -6 596 319 64 23 chr3 77114646 77115038 -140922120 + L1MCc LINE L1 1129 1536 -4887 763 258 43 12 chr3 77115147 77115469 -140921689 + L1MCc LINE L1 2783 3114 -4008 305 188 12 0 chr3 77115777 77115857 -140921301 + (TA)n Simple_repeat Simple_repeat 2 82 0 289 281 154 32 chr3 77118071 77118292 -140918866 - HAL1 LINE L1 -64 2443 2196 2331 102 0 3 chr3 77119945 77120259 -140916899 - AluSq SINE Alu 0 313 1 500 242 46 13 chr3 77120424 77120577 -140916581 + L1ME4a LINE L1 5964 6121 0 2023 118 3 33 chr3 77121351 77121656 -140915502 + AluSx SINE Alu 1 296 -16 1130 145 6 0 chr3 77121656 77121828 -140915330 + AluSg/x SINE Alu 134 306 -6 313 87 96 0 chr3 77121829 77121944 -140915214 + (TA)n Simple_repeat Simple_repeat 1 126 0 * 442 89 76 13 chr3 77121939 77122097 -140915061 + (TATAA)n Simple_repeat Simple_repeat 5 172 0 382 107 107 0 chr3 77122107 77122266 -140914892 + (TA)n Simple_repeat Simple_repeat 1 176 0 26 0 0 0 chr3 77122972 77122998 -140914160 + AT_rich Low_complexity Low_complexity 1 26 0 278 191 0 103 chr3 77123126 77123194 -140913964 + MER21B LTR ERV1 1 61 -802 2251 91 3 7 chr3 77124954 77125251 -140911907 + AluSx SINE Alu 1 296 -16 1882 130 38 14 chr3 77125676 77125969 -140911189 + AluSx SINE Alu 6 305 -7 1321 171 6 111 chr3 77126610 77126925 -140910233 - AluJo SINE Alu -30 282 1 1002 176 30 121 chr3 77126981 77127348 -140909810 + MER33 DNA MER1_type 1 324 0 196 286 82 0 chr3 77127867 77127916 -140909242 + MIR SINE MIR 14 66 -196 255 177 326 14 chr3 77127925 77128066 -140909092 - ORSL DNA AcHobo -2 273 89 218 81 27 0 chr3 77128066 77128103 -140909055 + (TA)n Simple_repeat Simple_repeat 2 39 0 743 118 7 7 chr3 77128103 77128238 -140908920 - L1 LINE L1 -817 5329 5195 205 300 77 46 chr3 77128713 77128843 -140908315 + MIR SINE MIR 33 166 -96 725 265 25 54 chr3 77128856 77129248 -140907910 + MLT1I LTR MaLR 18 391 -18 192 40 0 0 chr3 77129635 77129660 -140907498 + (TC)n Simple_repeat Simple_repeat 2 26 0 926 150 0 0 chr3 77130067 77130200 -140906958 - FLAM_C SINE Alu 0 133 1 2857 192 67 7 chr3 77130331 77130945 -140906213 + L1MB3 LINE L1 5486 6136 -47 1416 102 4 37 chr3 77130934 77131043 -140906115 + L1M1 LINE L1 5155 5266 -952 * 2274 113 0 3 chr3 77131043 77131352 -140905806 + AluSg SINE Alu 1 308 -2 1416 102 4 37 chr3 77131352 77131586 -140905572 + L1M1 LINE L1 5266 5475 -743 11160 176 67 10 chr3 77131602 77134579 -140902579 + L1MA2 LINE L1 2696 5853 -451 882 357 72 30 chr3 77134775 77135018 -140902140 + L2 LINE L2 2334 2565 -748 2087 122 10 0 chr3 77135018 77135313 -140901845 - AluSx SINE Alu -14 298 1 882 357 72 30 chr3 77135313 77135787 -140901371 + L2 LINE L2 2565 3086 -227 1049 232 160 29 chr3 77135835 77136141 -140901017 - MLT1C LTR MaLR 0 467 160 489 104 0 0 chr3 77136141 77136218 -140900940 + L1MA5 LINE L1 6224 6300 0 634 210 62 12 chr3 77136594 77136756 -140900402 - MLT1C LTR MaLR -335 170 1 32 43 0 0 chr3 77136789 77136835 -140900323 + AT_rich Low_complexity Low_complexity 1 46 0 1529 161 32 35 chr3 77136862 77137193 -140899965 - MER33 DNA MER1_type 0 324 1 21 36 0 0 chr3 77137857 77137885 -140899273 + AT_rich Low_complexity Low_complexity 1 28 0 780 167 0 0 chr3 77139036 77139162 -140897996 - FLAM_C SINE Alu -5 128 3 314 224 48 36 chr3 77139610 77139775 -140897383 + (TATAA)n Simple_repeat Simple_repeat 2 168 0 2111 112 0 3 chr3 77140189 77140475 -140896683 - AluSc SINE Alu -24 285 1 449 294 0 0 chr3 77140476 77140578 -140896580 - MLT1H LTR MaLR -447 102 1 444 304 65 24 chr3 77140608 77140776 -140896382 - MIR SINE MIR -78 184 10 1358 244 50 11 chr3 77141656 77142016 -140895142 - MLT1A2 LTR MaLR 0 374 1 462 298 62 43 chr3 77142054 77142262 -140894896 + L2 LINE L2 2727 2938 -376 222 280 4 134 chr3 77142262 77142400 -140894758 + L2 LINE L2 3044 3142 -171 2187 125 0 0 chr3 77142400 77142704 -140894454 - AluSg SINE Alu -6 304 1 222 280 4 134 chr3 77142704 77142797 -140894361 + L2 LINE L2 3142 3245 -68 491 320 115 8 chr3 77145223 77145467 -140891691 + L3 LINE CR1 1230 1499 -78 6653 120 9 14 chr3 77145908 77146913 -140890245 + THE1B-int LTR MaLR 581 1580 0 2432 124 8 6 chr3 77146913 77147276 -140889882 + THE1B LTR MaLR 1 364 0 480 197 7 102 chr3 77147556 77147647 -140889511 + L2 LINE L2 3186 3261 -52 2366 85 0 7 chr3 77147647 77147952 -140889206 + AluY SINE Alu 3 305 -6 480 197 7 102 chr3 77147952 77147997 -140889161 + L2 LINE L2 3261 3309 -4 347 270 97 68 chr3 77148055 77148392 -140888766 + L1M4 LINE L1 2748 3097 -3049 518 300 130 19 chr3 77148447 77149179 -140887979 + L1M4 LINE L1 3514 4324 -1822 450 349 58 15 chr3 77149186 77149513 -140887645 + L1M4 LINE L1 4495 4835 -1311 186 43 0 0 chr3 77149541 77149564 -140887594 + (CA)n Simple_repeat Simple_repeat 2 24 0 29584 96 6 10 chr3 77149805 77154094 -140883064 + L1P LINE L1 228 4502 -1644 308 313 89 45 chr3 77155670 77155780 -140881378 - MIR SINE MIR -21 241 137 2798 6 0 13 chr3 77155780 77156095 -140881063 + AluY SINE Alu 1 311 0 308 313 89 45 chr3 77156095 77156208 -140880950 - MIR SINE MIR -125 137 8 672 289 29 5 chr3 77156218 77156422 -140880736 + MIR SINE MIR 51 259 -3 1126 174 61 15 chr3 77157474 77157670 -140879488 + AluJb SINE Alu 74 278 -34 342 173 0 0 chr3 77157670 77157745 -140879413 + GA-rich Low_complexity Low_complexity 4 78 0 756 260 71 64 chr3 77157746 77158450 -140878708 + L1MDa LINE L1 1266 1974 -4566 2195 106 17 0 chr3 77158803 77159095 -140878063 + AluSq SINE Alu 1 297 -16 6665 139 19 7 chr3 77159111 77160702 -140876456 + L1MA3 LINE L1 4691 6305 0 37 23 0 0 chr3 77160702 77160746 -140876412 + AT_rich Low_complexity Low_complexity 1 44 0 1773 231 7 16 chr3 77160802 77161239 -140875919 - L1M4 LINE L1 -1814 4332 3900 21 36 0 0 chr3 77162146 77162174 -140874984 + AT_rich Low_complexity Low_complexity 1 28 0 728 264 33 33 chr3 77162300 77162647 -140874511 + L1MDa LINE L1 3481 3830 -2710 2174 94 10 10 chr3 77162647 77162944 -140874214 + AluSg SINE Alu 1 297 -13 728 264 33 33 chr3 77162944 77162993 -140874165 + L1MDa LINE L1 3829 3877 -2663 595 270 57 20 chr3 77163044 77163292 -140873866 + L1MDa LINE L1 4050 4306 -2234 882 282 47 54 chr3 77163300 77163893 -140873265 + L1M4 LINE L1 4744 5332 -814 294 281 62 21 chr3 77164371 77164467 -140872691 - L2 LINE L2 -5 3308 3209 244 291 45 4 chr3 77164481 77164620 -140872538 - MIR SINE MIR -6 256 63 2309 105 0 0 chr3 77164721 77165017 -140872141 - AluSx SINE Alu -16 296 1 2387 65 0 3 chr3 77165131 77165424 -140871734 - AluY SINE Alu -19 292 1 24 0 0 0 chr3 77165496 77165520 -140871638 + AT_rich Low_complexity Low_complexity 1 24 0 471 235 0 61 chr3 77167002 77167117 -140870041 + Tigger3(Golem) DNA MER2_type 1 108 -2921 962 98 73 0 chr3 77167117 77167281 -140869877 + Tigger3(Golem) DNA MER2_type 2285 2460 -569 1552 119 32 8 chr3 77167315 77167566 -140869592 - L1PB2 LINE L1 -7 6144 5888 380 291 50 7 chr3 77168820 77168961 -140868197 - MLT1I LTR MaLR 0 409 263 214 49 24 24 chr3 77169004 77169045 -140868113 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 818 59 0 0 chr3 77169542 77169643 -140867515 + THE1A LTR MaLR 225 325 -30 3629 204 79 9 chr3 77169643 77171244 -140865914 + L1MB8 LINE L1 4428 6141 -37 1281 322 121 34 chr3 77171928 77173020 -140864138 - L2 LINE L2 -3 3310 2076 282 289 52 21 chr3 77173021 77173118 -140864040 - MER102b DNA MER1_type -46 295 196 259 196 0 0 chr3 77173120 77173166 -140863992 - MER96B DNA MER1_type? -182 235 190 235 143 104 13 chr3 77173425 77173502 -140863656 - MER96B DNA MER1_type? -246 171 88 922 189 7 0 chr3 77173512 77173665 -140863493 - FRAM SINE Alu -30 146 1 308 302 23 0 chr3 77173677 77173763 -140863395 - MER96B DNA MER1_type? -329 88 1 * 335 246 56 32 chr3 77173763 77173888 -140863270 - MER102b DNA MER1_type -169 172 45 1453 176 54 18 chr3 77174141 77174420 -140862738 - AluJb SINE Alu -23 289 1 246 32 0 0 chr3 77174985 77175016 -140862142 + (CA)n Simple_repeat Simple_repeat 1 31 0 1914 115 56 0 chr3 77175278 77175547 -140861611 + AluSx SINE Alu 1 284 -28 342 0 0 0 chr3 77175547 77175585 -140861573 + (CA)n Simple_repeat Simple_repeat 2 39 0 181 205 0 0 chr3 77175642 77175681 -140861477 + L2 LINE L2 3273 3311 -2 956 280 30 67 chr3 77176173 77176340 -140860818 + MLT1F LTR MaLR 5 176 -366 183 42 0 0 chr3 77176340 77176364 -140860794 + (TC)n Simple_repeat Simple_repeat 1 24 0 956 280 30 67 chr3 77176364 77176557 -140860601 + MLT1F LTR MaLR 176 352 -190 511 180 20 0 chr3 77176564 77176664 -140860494 + MLT1F LTR MaLR 464 565 -2 394 318 152 57 chr3 77176665 77177106 -140860052 + LTR67 LTR ERVL 75 557 0 286 234 117 11 chr3 77177996 77178090 -140859068 + L3 LINE CR1 1467 1570 -7 37 39 0 0 chr3 77178379 77178430 -140858728 + AT_rich Low_complexity Low_complexity 1 51 0 434 314 98 45 chr3 77178432 77178769 -140858389 + L2 LINE L2 2519 2873 -441 3165 144 38 16 chr3 77178792 77179397 -140857761 - L1MB7 LINE L1 -304 5880 5263 789 190 117 6 chr3 77179399 77179562 -140857596 + L1PA16 LINE L1 5962 6142 -24 21 0 0 0 chr3 77179564 77179585 -140857573 + AT_rich Low_complexity Low_complexity 1 21 0 1634 193 50 22 chr3 77179635 77180086 -140857072 - L1MB7 LINE L1 -878 5268 4816 16977 153 52 10 chr3 77181170 77185307 -140851851 + L1PBa LINE L1 106 4424 -2438 192 40 0 0 chr3 77185307 77185332 -140851826 + (CAA)n Simple_repeat Simple_repeat 2 26 0 16977 153 52 10 chr3 77185332 77185511 -140851647 + L1PBa LINE L1 4424 4594 -2268 5675 134 148 2 chr3 77185849 77187282 -140849876 + L1PBa LINE L1 1703 3344 -3518 1020 245 23 8 chr3 77188254 77188511 -140848647 - MIR SINE MIR -1 261 1 228 245 280 21 chr3 77189331 77189474 -140847684 + MIR SINE MIR 83 262 0 1452 135 26 99 chr3 77189488 77189792 -140847366 - AluJo SINE Alu -30 282 1 273 318 33 75 chr3 77190307 77190521 -140846637 + L2 LINE L2 3106 3310 -3 450 287 8 16 chr3 77190926 77191055 -140846103 + L1MC4a LINE L1 243 370 -5749 24 0 0 0 chr3 77191097 77191121 -140846037 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr3 77191738 77191760 -140845398 + AT_rich Low_complexity Low_complexity 1 22 0 383 259 188 25 chr3 77192068 77192307 -140844851 + L1MC4a LINE L1 2984 3261 -2868 582 300 79 18 chr3 77192478 77192982 -140844176 + L1MC4a LINE L1 3422 3956 -2173 461 287 73 7 chr3 77193024 77193174 -140843984 - MLT1I LTR MaLR 0 409 250 226 217 33 17 chr3 77193225 77193285 -140843873 - MLT1I LTR MaLR -239 170 110 448 175 25 0 chr3 77193308 77193388 -140843770 + MLT1A1 LTR MaLR 284 365 0 681 269 156 44 chr3 77195187 77195314 -140841844 + L2 LINE L2 2958 3069 -244 1254 181 35 0 chr3 77195314 77195455 -140841703 + MER46A DNA MER2_type 3 156 -2575 324 0 0 0 chr3 77195455 77195491 -140841667 + (TG)n Simple_repeat Simple_repeat 2 37 0 1254 181 35 0 chr3 77195491 77195575 -140841583 + MER46A DNA MER2_type 156 236 0 681 269 156 44 chr3 77195575 77195767 -140841391 + L2 LINE L2 3069 3313 0 2094 121 14 59 chr3 77196213 77196568 -140840590 - MER1B DNA MER1_type 0 339 1 834 230 28 47 chr3 77196699 77196912 -140840246 - MIR SINE MIR -42 220 12 325 191 56 22 chr3 77196935 77197024 -140840134 + MER5C DNA MER1_type 33 124 -200 23 114 0 0 chr3 77197331 77197445 -140839713 + AT_rich Low_complexity Low_complexity 1 114 0 38 95 0 0 chr3 77197561 77197645 -140839513 + AT_rich Low_complexity Low_complexity 1 84 0 2633 93 31 29 chr3 77198121 77198571 -140838587 - L1PA11 LINE L1 0 6174 5724 2215 231 75 65 chr3 77198803 77199566 -140837592 - L1ME1 LINE L1 -10 6156 5387 1627 157 38 101 chr3 77200006 77200433 -140836725 - MLT2D LTR ERVL -12 402 3 242 286 0 0 chr3 77200446 77200509 -140836649 + L1MC4a LINE L1 4723 4785 -1344 983 264 37 0 chr3 77200543 77200759 -140836399 + MER58A DNA MER1_type 1 224 0 1189 261 63 64 chr3 77200772 77201845 -140835313 + L1MC4a LINE L1 4860 5323 -806 186 235 0 0 chr3 77202063 77202097 -140835061 + MIR SINE MIR 217 250 -12 182 211 0 123 chr3 77202097 77202120 -140835038 + L2 LINE L2 3262 3311 -2 330 26 0 0 chr3 77202412 77202451 -140834707 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 249 264 0 0 chr3 77202474 77202546 -140834612 + GA-rich Low_complexity Low_complexity 4 75 0 14402 134 11 5 chr3 77202909 77204362 -140832796 + Tigger1 DNA MER2_type 168 1640 -778 1690 125 76 60 chr3 77204362 77204534 -140832624 + THE1C LTR MaLR 1 169 -206 2192 121 3 0 chr3 77204534 77204831 -140832327 + AluSx SINE Alu 1 298 -14 1690 125 76 60 chr3 77204831 77205027 -140832131 + THE1C LTR MaLR 169 375 0 14402 134 11 5 chr3 77205027 77205811 -140831347 + Tigger1 DNA MER2_type 1640 2418 0 45 45 0 0 chr3 77206612 77206678 -140830480 + AT_rich Low_complexity Low_complexity 1 66 0 190 154 49 16 chr3 77206678 77206801 -140830357 + (TA)n Simple_repeat Simple_repeat 1 127 0 77 38 0 0 chr3 77206801 77206906 -140830252 + AT_rich Low_complexity Low_complexity 1 105 0 1491 129 5 0 chr3 77206906 77207116 -140830042 - AluSg/x SINE Alu -23 287 77 2075 128 3 0 chr3 77207398 77207686 -140829472 - AluSg SINE Alu -21 289 1 1658 168 153 6 chr3 77207689 77207866 -140829292 - L1M4 LINE L1 -1541 4605 4455 2000 143 10 3 chr3 77207866 77208160 -140828998 - AluSx SINE Alu -16 296 1 1658 168 153 6 chr3 77208160 77208453 -140828705 - L1M4 LINE L1 -1691 4455 4066 457 302 122 31 chr3 77208579 77208834 -140828324 + L2 LINE L2 3036 3313 0 349 291 73 22 chr3 77208859 77209038 -140828120 - MARNA DNA Mariner -17 569 382 451 117 0 39 chr3 77210089 77210166 -140826992 - AluSg/x SINE Alu -22 290 217 1193 113 13 0 chr3 77210166 77210325 -140826833 + AluSq SINE Alu 47 207 -106 319 304 109 0 chr3 77210796 77210888 -140826270 + MER91A DNA MER1_type 90 191 -5 321 305 148 39 chr3 77212047 77212404 -140824754 + MLT1K LTR MaLR 131 526 -62 2157 95 3 17 chr3 77213389 77213683 -140823475 - AluSc SINE Alu -17 292 3 1743 97 139 15 chr3 77214510 77214777 -140822381 + AluSx SINE Alu 1 300 -12 181 283 0 50 chr3 77215155 77215215 -140821943 + L2 LINE L2 1912 1968 -1346 3912 200 62 51 chr3 77215438 77216332 -140820826 - L1MD3 LINE L1 -8 7987 7076 1769 183 0 0 chr3 77216332 77216617 -140820541 - AluJo SINE Alu -21 291 7 3912 200 62 51 chr3 77216617 77216829 -140820329 - L1MD3 LINE L1 -919 7076 6868 326 365 121 8 chr3 77216917 77217166 -140819992 + L2 LINE L2 680 956 -2358 1284 361 92 60 chr3 77217281 77218723 -140818435 + L2 LINE L2 1375 2862 -452 21 0 0 0 chr3 77218750 77218771 -140818387 + AT_rich Low_complexity Low_complexity 1 21 0 218 81 27 0 chr3 77219682 77219719 -140817439 + (CA)n Simple_repeat Simple_repeat 2 39 0 181 292 56 14 chr3 77220545 77220617 -140816541 + L3b LINE CR1 1138 1212 -371 328 282 63 70 chr3 77220735 77220877 -140816281 - L2 LINE L2 -1 3312 3172 1025 105 20 0 chr3 77220890 77221042 -140816116 + MER41B LTR ERV1 481 635 0 1217 105 47 11 chr3 77221117 77221307 -140815851 + MER41B-int LTR ERV1 3 199 -7557 2325 72 19 3 chr3 77221307 77221628 -140815530 - L1PA8 LINE L1 -2 6170 5845 16033 135 9 25 chr3 77221732 77224883 -140812275 - L1P3 LINE L1 -2743 3718 584 9015 95 33 28 chr3 77224983 77226241 -140810917 + MER57-int LTR ERV1 2189 3985 -3552 2092 107 3 25 chr3 77226241 77226559 -140810599 - AluY SINE Alu 0 311 1 9015 95 33 28 chr3 77226559 77227003 -140810155 + MER57-int LTR ERV1 3985 4425 -3112 3521 73 30 0 chr3 77227117 77227610 -140809548 + HERVK14 LTR ERVK 1321 1828 -4117 2094 90 222 174 chr3 77227611 77228292 -140808866 + pTR5 LTR ERV1 2 691 -23 1839 135 26 42 chr3 77228401 77228786 -140808372 - L1PBb LINE L1 -5146 1058 680 15297 31 3 3 chr3 77228810 77231412 -140805746 - L1PA4 LINE L1 -3 6152 3549 371 228 0 0 chr3 77231700 77231779 -140805379 - MER117 DNA MER1_type -115 82 4 698 315 31 14 chr3 77232248 77232505 -140804653 - MIR SINE MIR 0 262 3 2094 117 0 26 chr3 77232942 77233249 -140803909 - AluSx SINE Alu -12 300 2 331 244 61 84 chr3 77234439 77234468 -140802690 - MIR SINE MIR -113 149 121 3204 167 16 25 chr3 77234468 77235074 -140802084 - MER6A DNA MER2_type 0 605 5 331 244 61 84 chr3 77235074 77235175 -140801983 - MIR SINE MIR -141 121 22 409 316 282 3 chr3 77236262 77236578 -140800580 - L2 LINE L2 -3 3310 2907 2047 131 17 161 chr3 77236647 77237180 -140799978 - LTR32 LTR ERVL 0 471 16 2268 132 5 28 chr3 77237180 77237567 -140799591 + L1PA16 LINE L1 5775 6152 -14 369 269 39 62 chr3 77237671 77237801 -140799357 + LTR33A LTR ERVL 69 195 -328 530 275 33 0 chr3 77237849 77238031 -140799127 + LTR33 LTR ERVL 328 515 -6 595 303 248 21 chr3 77238085 77238614 -140798544 - L2 LINE L2 -529 2785 2137 351 65 0 0 chr3 77239782 77239828 -140797330 + (TG)n Simple_repeat Simple_repeat 1 46 0 286 293 70 0 chr3 77239946 77240103 -140797055 - L1MC/D LINE L1 -1976 5832 5665 235 255 0 0 chr3 77240937 77240988 -140796170 - MIR SINE MIR -108 154 104 2021 200 42 9 chr3 77241037 77241487 -140795671 - MLT1C LTR MaLR 0 467 3 3587 160 43 82 chr3 77241628 77242503 -140794655 - L1MB7 LINE L1 -9 6673 5886 6718 69 7 3 chr3 77242503 77243969 -140793189 + L1PA14 LINE L1 4687 6158 -3 3587 160 43 82 chr3 77243969 77244828 -140792330 - L1MB7 LINE L1 -796 5886 4995 22 0 0 0 chr3 77244829 77244851 -140792307 + AT_rich Low_complexity Low_complexity 1 22 0 2117 121 0 3 chr3 77244852 77245142 -140792016 + AluSx SINE Alu 1 289 -23 363 181 0 0 chr3 77245142 77245214 -140791944 + (TA)n Simple_repeat Simple_repeat 1 72 0 269 194 0 0 chr3 77245214 77245286 -140791872 - L1MB7 LINE L1 -1667 4977 4906 807 174 36 0 chr3 77245607 77245774 -140791384 - L1MB7 LINE L1 -6365 177 5 326 308 131 23 chr3 77245991 77246205 -140790953 - MIR SINE MIR -10 252 16 403 353 29 24 chr3 77246383 77246553 -140790605 + MIR SINE MIR 8 178 -84 325 301 29 75 chr3 77246718 77246891 -140790267 + L1ME LINE L1 5539 5703 -418 4512 181 56 5 chr3 77247047 77247925 -140789233 - MER49 LTR ERV1 0 923 1 244 216 11 45 chr3 77247925 77248013 -140789145 + L1ME4a LINE L1 6021 6105 -16 407 266 70 11 chr3 77248303 77248437 -140788721 + L1ME1 LINE L1 19 144 -6711 459 0 0 0 chr3 77248437 77248488 -140788670 + (CA)n Simple_repeat Simple_repeat 2 52 0 407 266 70 11 chr3 77248488 77248573 -140788585 + L1ME1 LINE L1 144 493 -6362 472 297 88 96 chr3 77248710 77249117 -140788041 + L1ME1 LINE L1 798 1201 -5654 1132 218 55 98 chr3 77249188 77250101 -140787057 + L1ME1 LINE L1 3486 4437 -2540 2367 95 7 0 chr3 77250101 77250407 -140786751 - AluSq SINE Alu -5 308 1 1132 218 55 98 chr3 77250407 77251170 -140785988 + L1ME1 LINE L1 4437 5232 -1745 2392 87 3 0 chr3 77251170 77251468 -140785690 - AluSx SINE Alu -13 299 1 1132 218 55 98 chr3 77251468 77252285 -140784873 + L1ME1 LINE L1 5232 5869 -1108 2220 119 3 0 chr3 77252285 77252587 -140784571 + AluSq SINE Alu 1 303 -10 1132 218 55 98 chr3 77252587 77253521 -140783637 + L1ME1 LINE L1 5869 6842 -135 6206 120 20 6 chr3 77253540 77254640 -140782518 - L1MA2 LINE L1 -8 6296 5181 2521 94 19 16 chr3 77254640 77255014 -140782144 + THE1C LTR MaLR 1 375 0 6206 120 20 6 chr3 77255014 77255037 -140782121 - L1MA2 LINE L1 -1123 5181 5160 7286 194 39 6 chr3 77255053 77256530 -140780628 - L1M1 LINE L1 -6017 1548 23 581 206 20 14 chr3 77256537 77256683 -140780475 + L1MB7 LINE L1 6033 6179 -5 391 156 0 0 chr3 77256687 77256764 -140780394 - L1PB3 LINE L1 -2 6152 6076 900 271 84 22 chr3 77258476 77258797 -140778361 + L2 LINE L2 2952 3292 -21 1556 175 44 7 chr3 77259194 77259491 -140777667 - Tigger7 DNA MER2_type -425 308 1 12437 33 10 2 chr3 77259764 77262050 -140775108 - L1PA4 LINE L1 -2 6153 3855 7972 29 8 0 chr3 77262050 77263082 -140774076 + L1PA4 LINE L1 2801 3840 -2306 329 401 28 11 chr3 77263319 77263496 -140773662 - L2 LINE L2 -214 3058 2879 600 303 57 55 chr3 77263602 77263969 -140773189 + LTR16C LTR ERVL 107 474 -17 685 249 54 0 chr3 77264640 77264825 -140772333 + MIR SINE MIR 59 253 -9 2271 99 7 3 chr3 77265266 77265568 -140771590 + AluSx SINE Alu 1 303 -9 2309 103 0 0 chr3 77265687 77265988 -140771170 + AluSc SINE Alu 1 301 -8 632 293 40 40 chr3 77266428 77266681 -140770477 + MIR SINE MIR 8 260 -2 294 328 104 24 chr3 77267022 77267147 -140770011 + L2 LINE L2 3137 3271 -1 298 255 75 31 chr3 77267172 77267325 -140769833 + MIR SINE MIR 3 156 -66 12144 107 8 29 chr3 77267354 77269404 -140767754 - L1P3 LINE L1 -4407 2054 12 1166 258 33 35 chr3 77269460 77269826 -140767332 + L1M4 LINE L1 3796 4162 -1984 2174 80 42 0 chr3 77269826 77270115 -140767043 + AluY SINE Alu 1 301 -10 1166 258 33 35 chr3 77270115 77270268 -140766890 + L1M4 LINE L1 4162 4314 -1832 5791 151 12 12 chr3 77270416 77272282 -140764876 + L1PB1 LINE L1 4289 6150 -1 225 132 0 0 chr3 77273305 77273343 -140763815 + (TG)n Simple_repeat Simple_repeat 1 38 0 2545 165 86 25 chr3 77273753 77274267 -140762891 - MER90 LTR ERV1 0 614 70 2408 64 3 0 chr3 77274566 77274864 -140762294 + AluY SINE Alu 1 299 -12 260 267 78 26 chr3 77275063 77275179 -140761979 + MLT1K LTR MaLR 17 138 -450 230 325 0 13 chr3 77275257 77275334 -140761824 + MLT1K LTR MaLR 191 266 -322 684 217 37 48 chr3 77275509 77275698 -140761460 - L1 LINE L1 -1053 5093 4907 1016 244 154 28 chr3 77277674 77278038 -140759120 + MLT1D LTR MaLR 15 424 -81 965 221 111 0 chr3 77278039 77278247 -140758911 + MLT1D LTR MaLR 275 505 0 272 216 232 48 chr3 77278276 77278401 -140758757 + L2 LINE L2 3123 3270 -43 192 300 125 0 chr3 77278450 77278530 -140758628 + L2 LINE L2 3143 3232 -40 182 267 100 67 chr3 77278857 77278947 -140758211 + MIR SINE MIR 89 181 -81 4202 146 96 18 chr3 77279059 77280361 -140756797 - pTR5 LTR ERV1 0 2606 1524 314 228 140 79 chr3 77280364 77280612 -140756546 + MIR SINE MIR 1 262 0 372 206 37 28 chr3 77281768 77281875 -140755283 + MER5A DNA MER1_type 63 170 -19 386 230 26 94 chr3 77281994 77282185 -140754973 + MER5B DNA MER1_type 1 178 0 265 248 238 2 chr3 77283345 77283457 -140753701 - MIR SINE MIR -52 156 23 522 375 62 19 chr3 77284070 77284484 -140752674 + L2 LINE L2 566 1008 -2306 223 47 0 47 chr3 77284484 77284527 -140752631 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 522 375 62 19 chr3 77284527 77284624 -140752534 + L2 LINE L2 1008 1099 -2215 413 206 22 0 chr3 77285155 77285247 -140751911 - MIR SINE MIR -1 261 168 297 51 0 0 chr3 77286097 77286136 -140751022 + (TG)n Simple_repeat Simple_repeat 2 40 0 295 226 157 49 chr3 77287122 77287224 -140749934 + L2 LINE L2 3152 3264 -8 197 167 28 0 chr3 77287631 77287667 -140749491 + L2 LINE L2 2717 2753 -561 3067 269 83 21 chr3 77287674 77288684 -140748474 + L2 LINE L2 1904 2976 -338 213 282 70 28 chr3 77288653 77288724 -140748434 + L2 LINE L2 3199 3272 0 * 352 287 66 41 chr3 77289101 77289223 -140747935 + L2 LINE L2 3182 3306 -7 269 200 27 82 chr3 77289229 77289339 -140747819 - MIR SINE MIR -70 192 89 300 274 35 9 chr3 77290857 77290970 -140746188 + Charlie7 DNA MER1_type 2491 2606 -6 2497 78 0 0 chr3 77291157 77291463 -140745695 - AluY SINE Alu -5 306 1 2102 127 3 7 chr3 77291465 77291772 -140745386 - AluSx SINE Alu -6 306 1 272 256 179 34 chr3 77291877 77291994 -140745164 - L2 LINE L2 0 3313 3180 4005 232 58 38 chr3 77291998 77292754 -140744404 - L1M4 LINE L1 -989 5157 4418 2472 91 0 0 chr3 77292754 77293062 -140744096 + AluSc SINE Alu 1 308 -1 4005 232 58 38 chr3 77293062 77293272 -140743886 - L1M4 LINE L1 -1728 4418 4214 2298 66 42 0 chr3 77293272 77293561 -140743597 - AluY SINE Alu -10 301 1 4005 232 58 38 chr3 77293561 77293927 -140743231 - L1M4 LINE L1 -1932 4214 3796 12949 107 8 29 chr3 77293983 77296033 -140741125 + L1P3 LINE L1 12 2054 -4407 291 255 75 31 chr3 77296062 77296215 -140740943 - MIR SINE MIR -66 142 3 288 328 104 24 chr3 77296240 77296365 -140740793 - L2 LINE L2 -1 3271 3137 609 293 40 40 chr3 77296706 77296959 -140740199 - MIR SINE MIR -2 260 8 2311 103 0 0 chr3 77297399 77297700 -140739458 - AluSc SINE Alu -8 301 1 2338 89 7 3 chr3 77297819 77298121 -140739037 - AluSx SINE Alu -9 303 1 678 249 54 0 chr3 77298562 77298747 -140738411 - MIR SINE MIR -9 253 59 713 303 57 55 chr3 77299418 77299785 -140737373 - LTR16C LTR ERVL -17 474 107 309 401 28 11 chr3 77299891 77300068 -140737090 + L2 LINE L2 2879 3058 -214 22701 106 14 87 chr3 77300306 77304439 -140732719 - L1P LINE L1 -2306 3840 12 2538 61 3 0 chr3 77305222 77305532 -140731626 + AluY SINE Alu 1 311 0 231 281 62 0 chr3 77306421 77306485 -140730673 - L2 LINE L2 -1 3312 3245 491 252 150 55 chr3 77306488 77306949 -140730209 + L2 LINE L2 2533 3059 -213 7000 22 0 1 chr3 77307098 77307861 -140729297 + L1PA4 LINE L1 5394 6155 0 1116 245 23 8 chr3 77308681 77308938 -140728220 - MIR SINE MIR -1 261 1 391 246 102 18 chr3 77311326 77311474 -140725684 + MIR SINE MIR 20 145 -63 278 211 113 75 chr3 77312123 77312256 -140724902 - MIR SINE MIR -119 143 6 2293 92 3 7 chr3 77312612 77312917 -140724241 + AluSp SINE Alu 3 306 -7 2363 101 0 0 chr3 77312919 77313225 -140723933 + AluY SINE Alu 1 306 -5 416 242 98 7 chr3 77313412 77313565 -140723593 - Charlie7 DNA MER1_type -6 2606 2440 292 169 60 108 chr3 77313564 77313647 -140723511 - Charlie7 DNA MER1_type -2528 84 6 * 302 331 55 18 chr3 77315286 77315449 -140721709 - L2 LINE L2 -189 3083 2915 248 252 46 69 chr3 77315605 77315736 -140721422 + MER113 DNA MER1_type? 7 134 -387 45217 39 1 1 chr3 77315743 77321888 -140715270 - L1PA3 LINE L1 -3 6152 9 848 212 81 4 chr3 77321900 77322250 -140714908 + MER113 DNA MER1_type? 123 521 0 332 325 9 18 chr3 77322586 77322700 -140714458 - L2 LINE L2 -218 3054 2942 21 36 0 0 chr3 77323067 77323095 -140714063 + AT_rich Low_complexity Low_complexity 1 28 0 665 243 71 10 chr3 77324090 77324290 -140712868 + MIR SINE MIR 34 247 -15 317 298 124 68 chr3 77324418 77324579 -140712579 + L2 LINE L2 3099 3268 -4 433 252 43 36 chr3 77325042 77325181 -140711977 + Charlie8 DNA MER1_type 85 224 -2193 2113 134 6 13 chr3 77326279 77326592 -140710566 - AluSx SINE Alu -1 311 1 701 264 66 33 chr3 77326807 77327049 -140710109 + MIR SINE MIR 7 256 -6 381 403 27 0 chr3 77327146 77327295 -140709863 - L2 LINE L2 -5 3267 3115 580 275 56 32 chr3 77327379 77327717 -140709441 + L1ME2 LINE L1 706 1051 -5345 * 5077 151 19 5 chr3 77327704 77328592 -140708566 + L1PB4 LINE L1 5255 6155 -1 1618 266 53 53 chr3 77328601 77329469 -140707689 + L1ME2 LINE L1 1030 1897 -4499 1337 158 0 0 chr3 77329469 77329665 -140707493 + AluSx SINE Alu 1 196 -116 7118 237 74 29 chr3 77329683 77329887 -140707271 + L1ME2 LINE L1 1900 2093 -4122 2084 176 30 41 chr3 77329887 77330324 -140706834 - MSTB1 LTR MaLR 0 432 1 7118 237 74 29 chr3 77330324 77332282 -140704876 + L1ME2 LINE L1 2093 4201 -2014 1701 183 0 40 chr3 77332282 77332605 -140704553 + AluJb SINE Alu 1 310 -2 7118 237 74 29 chr3 77332605 77333288 -140703870 + L1ME2 LINE L1 4201 4852 -1363 1456 207 92 24 chr3 77333299 77333710 -140703448 + L1ME2 LINE L1 5770 6208 -25 1002 222 36 4 chr3 77333734 77333959 -140703199 - MIR SINE MIR -11 251 20 193 346 82 72 chr3 77334428 77334636 -140702522 - L2 LINE L2 -2851 463 254 506 238 137 55 chr3 77336496 77336861 -140700297 + HAL1 LINE L1 1988 2382 -125 192 40 0 0 chr3 77337981 77338006 -140699152 + (TA)n Simple_repeat Simple_repeat 1 25 0 738 301 73 67 chr3 77339214 77339748 -140697410 - LTR67 LTR ERVL -2 555 19 685 307 150 20 chr3 77340471 77340911 -140696247 + HAL1 LINE L1 8 504 -2003 1292 238 50 24 chr3 77341080 77341463 -140695695 - L1ME3A LINE L1 -24 6146 5754 286 232 0 0 chr3 77341555 77341624 -140695534 - L1M4b LINE L1 -5187 1672 1604 2260 244 68 108 chr3 77341878 77342501 -140694657 + HAL1 LINE L1 1138 1784 -723 3180 92 5 9 chr3 77342501 77342949 -140694209 + L1PA10 LINE L1 5718 6163 -5 2260 244 68 108 chr3 77342949 77343336 -140693822 + HAL1 LINE L1 1784 2077 -430 4667 166 15 12 chr3 77343336 77344221 -140692937 - L1MC1 LINE L1 0 6333 5447 2260 244 68 108 chr3 77344221 77344632 -140692526 + HAL1 LINE L1 2077 2503 -4 274 216 0 0 chr3 77344867 77344918 -140692240 + MIR SINE MIR 110 160 -102 321 68 0 0 chr3 77345536 77345580 -140691578 + (CA)n Simple_repeat Simple_repeat 2 45 0 1754 152 20 10 chr3 77345730 77346027 -140691131 - AluJb SINE Alu -12 300 1 216 320 87 39 chr3 77346095 77346198 -140690960 - L2 LINE L2 -300 2972 2865 249 266 16 0 chr3 77346415 77346479 -140690679 + (ATGGTG)n Simple_repeat Simple_repeat 5 69 0 827 306 9 9 chr3 77346496 77346715 -140690443 - MIR SINE MIR -31 231 13 217 290 105 32 chr3 77347424 77347548 -140689610 - MIR3 SINE MIR -71 137 5 189 274 142 9 chr3 77347613 77347719 -140689439 + L2 LINE L2 3153 3272 0 363 316 0 9 chr3 77347858 77347972 -140689186 - MIR3 SINE MIR -13 195 83 38 22 0 0 chr3 77348348 77348393 -140688765 + AT_rich Low_complexity Low_complexity 1 45 0 4679 169 44 53 chr3 77348415 77348851 -140688307 + L1MB5 LINE L1 4368 4806 -1368 2555 113 13 8 chr3 77348851 77349224 -140687934 + THE1C LTR MaLR 1 375 0 4679 169 44 53 chr3 77349224 77349692 -140687466 + L1MB5 LINE L1 4806 5277 -897 1239 211 84 19 chr3 77349692 77350015 -140687143 - MER2 DNA MER2_type 0 344 1 4679 169 44 53 chr3 77350015 77350920 -140686238 + L1MB5 LINE L1 5277 6166 -8 1049 204 4 74 chr3 77351090 77351360 -140685798 - MIR SINE MIR -10 252 2 275 365 44 28 chr3 77352485 77352666 -140684492 + L2 LINE L2 2896 3079 -193 22381 186 23 32 chr3 77352743 77354200 -140682958 + L1P4 LINE L1 2 1471 -6141 1882 174 0 0 chr3 77354200 77354498 -140682660 + AluSx SINE Alu 1 298 -14 22381 186 23 32 chr3 77354498 77356620 -140680538 + L1P4 LINE L1 1471 3612 -4000 2237 113 48 22 chr3 77356620 77356975 -140680183 + THE1B LTR MaLR 1 364 0 11281 87 29 4 chr3 77356975 77358516 -140678642 + THE1B-int LTR MaLR 1 1580 0 2247 111 54 23 chr3 77358516 77358869 -140678289 + THE1B LTR MaLR 1 364 0 22381 186 23 32 chr3 77358869 77359331 -140677827 + L1P4 LINE L1 3610 4075 -3537 2431 73 0 3 chr3 77359331 77359631 -140677527 + AluY SINE Alu 1 299 -12 22381 186 23 32 chr3 77359631 77361202 -140675956 + L1P4 LINE L1 4075 6928 -684 441 0 0 0 chr3 77361203 77361252 -140675906 + (TCTCCC)n Simple_repeat Simple_repeat 1 49 0 5467 66 43 53 chr3 77361257 77362094 -140675064 + SVA Other Other 38 866 -520 6715 63 5 69 chr3 77362111 77363130 -140674028 + SVA Other Other 433 1386 0 971 181 43 34 chr3 77363420 77363664 -140673494 + MER33 DNA MER1_type 1 230 -94 2378 90 29 15 chr3 77363673 77364277 -140672881 + L1PA11 LINE L1 5475 6174 0 585 215 27 34 chr3 77364277 77364426 -140672732 + L2 LINE L2 3160 3307 -6 762 261 114 22 chr3 77365828 77365934 -140671224 - L1ME4a LINE L1 -52 6069 5974 1434 168 71 24 chr3 77365934 77366231 -140670927 - AluJo SINE Alu -1 311 1 762 261 114 22 chr3 77366231 77366615 -140670543 - L1ME4a LINE L1 -147 5974 5534 3593 114 67 0 chr3 77366724 77367320 -140669838 + L1MA5A LINE L1 5657 6292 -5 23 86 0 0 chr3 77367368 77367426 -140669732 + AT_rich Low_complexity Low_complexity 1 58 0 450 127 55 36 chr3 77367427 77367537 -140669621 + L1MD3 LINE L1 7880 7991 -4 422 241 52 26 chr3 77367755 77367871 -140669287 - MIR SINE MIR -66 196 78 230 328 97 30 chr3 77368136 77368270 -140668888 + L2 LINE L2 3100 3242 -30 309 261 0 0 chr3 77368270 77368339 -140668819 - Charlie8 DNA MER1_type -989 1428 1360 783 253 94 16 chr3 77368489 77368734 -140668424 - Charlie8 DNA MER1_type -2153 264 1 317 145 61 191 chr3 77368808 77368939 -140668219 - MER5B DNA MER1_type -1 177 64 31 68 0 0 chr3 77372043 77372102 -140665056 + AT_rich Low_complexity Low_complexity 1 59 0 287 293 121 0 chr3 77372167 77372283 -140664875 + L1MC/D LINE L1 5694 5823 -1985 40 49 0 0 chr3 77372659 77372720 -140664438 + AT_rich Low_complexity Low_complexity 1 61 0 665 272 58 36 chr3 77372933 77373157 -140664001 + L2 LINE L2 3083 3311 -2 410 244 177 62 chr3 77373230 77373339 -140663819 - MIR SINE MIR -6 256 161 1248 126 5 10 chr3 77373339 77373545 -140663613 - L1MA6 LINE L1 -5 6295 6091 410 244 177 62 chr3 77373545 77373644 -140663514 - MIR SINE MIR -101 161 24 2303 83 10 0 chr3 77373645 77373946 -140663212 - AluY SINE Alu -6 305 2 21 36 0 0 chr3 77374359 77374387 -140662771 + AT_rich Low_complexity Low_complexity 1 28 0 251 220 9 92 chr3 77374594 77374703 -140662455 + MER102a DNA MER1_type 223 322 -8 268 316 33 33 chr3 77375300 77375452 -140661706 + L2 LINE L2 3119 3270 -43 474 323 12 6 chr3 77375576 77375743 -140661415 - MIR SINE MIR -16 246 79 27 29 0 0 chr3 77376590 77376624 -140660534 + AT_rich Low_complexity Low_complexity 1 34 0 590 305 219 37 chr3 77377755 77378642 -140658516 - L2 LINE L2 0 3272 2226 371 330 174 22 chr3 77379837 77380061 -140657097 - L3 LINE CR1 -82 1495 1238 663 217 114 76 chr3 77380660 77380849 -140656309 - MLT1J2 LTR MaLR -130 320 115 2047 130 10 3 chr3 77380849 77381150 -140656008 + AluSx SINE Alu 1 303 -9 663 217 114 76 chr3 77381150 77381250 -140655908 - MLT1J2 LTR MaLR -335 115 20 180 353 72 13 chr3 77381372 77381525 -140655633 + L2 LINE L2 2856 3017 -255 22 0 0 0 chr3 77381682 77381704 -140655454 + AT_rich Low_complexity Low_complexity 1 22 0 2936 6 0 0 chr3 77381753 77382070 -140655088 - AluYb8 SINE Alu -1 317 1 294 315 20 55 chr3 77382105 77382251 -140654907 - MER5A DNA MER1_type -2 187 47 261 0 0 0 chr3 77382594 77382623 -140654535 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 272 291 60 32 chr3 77383751 77383901 -140653257 - MIR3 SINE MIR -65 143 15 337 261 23 14 chr3 77384037 77384193 -140652965 + MIR SINE MIR 56 185 -77 29568 43 34 2 chr3 77386116 77390034 -140647124 - L1P LINE L1 -2103 4043 2 21093 33 0 5 chr3 77390034 77393303 -140643855 - L1PA3 LINE L1 -245 5910 2658 186 118 0 0 chr3 77394177 77394211 -140642947 + (T)n Simple_repeat Simple_repeat 1 34 0 24 0 0 0 chr3 77394674 77394698 -140642460 + AT_rich Low_complexity Low_complexity 1 24 0 563 300 130 5 chr3 77395222 77395445 -140641713 + MIR SINE MIR 1 251 -11 1104 232 52 69 chr3 77395640 77396106 -140641052 - MER39 LTR ERV1 0 707 250 40861 31 22 1 chr3 77396308 77402333 -140634825 - L1PA2 LINE L1 -1 6154 4 769 276 25 5 chr3 77403522 77403718 -140633440 + MIR SINE MIR 15 214 -48 185 303 79 56 chr3 77406431 77406520 -140630638 - MER5A DNA MER1_type -59 130 40 867 239 216 3 chr3 77406891 77407242 -140629916 - L1ME3A LINE L1 -34 6136 5711 251 235 0 0 chr3 77408934 77408985 -140628173 + L2 LINE L2 3221 3271 -1 224 303 49 33 chr3 77409024 77409146 -140628012 - L3 LINE CR1 -85 1492 1369 268 293 80 0 chr3 77409282 77409357 -140627801 + L2 LINE L2 3140 3220 -52 229 261 27 9 chr3 77409565 77409676 -140627482 + Charlie7 DNA MER1_type 2458 2570 -42 515 272 90 29 chr3 77409726 77409933 -140627225 - MIR SINE MIR -34 228 19 4129 158 50 5 chr3 77410273 77411120 -140626038 - L1MB7 LINE L1 -19 6165 5290 22 56 0 0 chr3 77411375 77411411 -140625747 + AT_rich Low_complexity Low_complexity 1 36 0 437 309 116 65 chr3 77412039 77412472 -140624686 - L2 LINE L2 0 3272 2818 223 172 172 47 chr3 77413086 77413150 -140624008 + L2 LINE L2 3197 3268 -4 272 302 157 41 chr3 77413336 77413508 -140623650 - MIR SINE MIR -50 212 21 203 246 101 0 chr3 77413986 77414055 -140623103 - MIR SINE MIR -36 226 151 1873 112 59 14 chr3 77415147 77415434 -140621724 - AluSx SINE Alu -12 300 1 220 258 81 48 chr3 77415436 77415560 -140621598 + L2 LINE L2 2387 2514 -800 2269 135 3 0 chr3 77415667 77416023 -140621135 - L1PA16 LINE L1 -2 6164 5808 193 269 39 0 chr3 77416031 77416083 -140621075 + L2 LINE L2 2596 2649 -665 203 360 0 0 chr3 77416090 77416165 -140620993 + MIR SINE MIR 2 76 -186 186 270 48 63 chr3 77416163 77416226 -140620932 + MIR SINE MIR 201 262 0 * 254 296 148 47 chr3 77416250 77416419 -140620739 + L2 LINE L2 2690 2875 -439 420 349 59 47 chr3 77416603 77416924 -140620234 - L2 LINE L2 0 3272 2948 231 105 0 0 chr3 77417262 77417300 -140619858 - L1MC1 LINE L1 -16 6317 6280 1296 125 74 0 chr3 77417305 77417521 -140619637 - L1MC1 LINE L1 -108 6225 5994 211 296 54 114 chr3 77417535 77417815 -140619343 + L2 LINE L2 3010 3272 0 2506 71 0 12 chr3 77417845 77418171 -140618987 + L1PA7 LINE L1 5820 6141 -13 312 298 286 0 chr3 77419009 77419187 -140617971 + MIR SINE MIR 23 251 -11 718 184 24 0 chr3 77419529 77419654 -140617504 + FLAM_A SINE Alu 4 131 -2 563 300 130 5 chr3 77420800 77421023 -140616135 + MIR SINE MIR 1 251 -11 1104 232 52 69 chr3 77421218 77421684 -140615474 - MER39 LTR ERV1 0 707 250 2161 35 0 0 chr3 77421886 77422142 -140615016 - L1PA2 LINE L1 -1 6154 5899 246 32 0 0 chr3 77422142 77422173 -140614985 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 24431 30 2 0 chr3 77422181 77425900 -140611258 - L1PA2 LINE L1 -4 6151 2427 4572 114 18 1 chr3 77425904 77426622 -140610536 + HSMAR2 DNA Mariner 568 1297 -5 2282 104 3 19 chr3 77427555 77427873 -140609285 - AluSp SINE Alu 0 313 1 182 333 0 0 chr3 77429945 77429996 -140607162 - MIR SINE MIR -3 259 209 12243 27 0 1 chr3 77429998 77432214 -140604944 - L1PA2 LINE L1 -1 6154 3941 11176 35 1 0 chr3 77433806 77435918 -140601240 - L1PA3 LINE L1 -3 6152 4039 221 346 23 8 chr3 77436191 77436324 -140600834 + G-rich Low_complexity Low_complexity 5 139 0 2282 104 3 19 chr3 77436888 77437206 -140599952 + AluSp SINE Alu 1 313 0 4572 114 18 1 chr3 77438139 77438857 -140598301 - HSMAR2 DNA Mariner -5 1297 568 24599 28 2 4 chr3 77438861 77442586 -140594572 + L1PA3 LINE L1 2427 6155 0 441 0 0 0 chr3 77442849 77442898 -140594260 + (CA)n Simple_repeat Simple_repeat 2 50 0 271 337 93 17 chr3 77443597 77443769 -140593389 - L2 LINE L2 -3 3310 3126 2389 100 0 0 chr3 77446480 77446789 -140590369 + AluSc SINE Alu 1 309 0 2210 103 6 10 chr3 77450529 77450840 -140586318 - AluSg SINE Alu 0 310 1 4467 87 18 2 chr3 77454206 77454824 -140582334 - L1PA11 LINE L1 0 6174 5547 365 211 15 108 chr3 77455175 77455320 -140581838 - MIR SINE MIR -53 155 45 30 27 0 0 chr3 77456187 77456224 -140580934 + AT_rich Low_complexity Low_complexity 1 37 0 1676 222 77 12 chr3 77456333 77456760 -140580398 + MLT2B1 LTR ERVL 1 523 -31 450 0 0 0 chr3 77456760 77456810 -140580348 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 1676 222 77 12 chr3 77456810 77456845 -140580313 + MLT2B1 LTR ERVL 523 554 0 1807 139 74 12 chr3 77457621 77457944 -140579214 + MER61A LTR ERV1 1 343 0 501 200 307 39 chr3 77457970 77458175 -140578983 - MIR SINE MIR -1 261 2 201 286 48 71 chr3 77458342 77458426 -140578732 - L2 LINE L2 -55 3258 3177 417 338 19 13 chr3 77459035 77459192 -140577966 + MIR SINE MIR 16 173 -89 397 218 30 30 chr3 77459251 77459352 -140577806 - MIR SINE MIR -3 259 159 397 229 12 0 chr3 77459664 77459747 -140577411 - MIR SINE MIR -103 159 76 1843 163 35 62 chr3 77460592 77461047 -140576111 + MER65A LTR ERV1 3 445 0 287 104 21 0 chr3 77462162 77462210 -140574948 + (TC)n Simple_repeat Simple_repeat 2 50 0 2086 89 4 25 chr3 77462212 77462492 -140574666 - AluSp SINE Alu -37 276 3 297 241 95 63 chr3 77462847 77463005 -140574153 + MIR SINE MIR 6 168 -94 395 246 102 18 chr3 77463629 77463777 -140573381 - MIR SINE MIR -63 145 20 507 298 0 8 chr3 77464913 77465034 -140572124 + L2 LINE L2 3193 3312 -1 491 321 72 28 chr3 77465296 77465614 -140571544 + MER102b DNA MER1_type 1 332 -9 621 318 17 9 chr3 77465748 77465981 -140571177 + MLT1H LTR MaLR 22 256 -293 294 209 17 4 chr3 77466128 77466220 -140570938 + MLT1H LTR MaLR 448 549 0 230 227 15 15 chr3 77466842 77466908 -140570250 + (TA)n Simple_repeat Simple_repeat 1 66 0 270 56 0 0 chr3 77466909 77466945 -140570213 + (TGGA)n Simple_repeat Simple_repeat 4 39 0 8234 178 27 6 chr3 77467071 77468681 -140568477 + L1PBa LINE L1 1 1644 -5219 4919 185 18 60 chr3 77468648 77469253 -140567905 + L1PBb LINE L1 8 637 -5566 * 3292 35 0 2 chr3 77469253 77469653 -140567505 + L1PA4 LINE L1 5754 6152 -3 4919 185 18 60 chr3 77469653 77471898 -140565260 + L1PBb LINE L1 637 3005 -3198 2218 128 0 0 chr3 77471898 77472195 -140564963 + AluSx SINE Alu 1 297 -15 4919 185 18 60 chr3 77472195 77472548 -140564610 + L1PBb LINE L1 3005 3371 -2832 281 353 98 67 chr3 77472772 77473129 -140564029 - L2 LINE L2 -25 3247 2880 694 173 12 71 chr3 77475620 77475809 -140561349 - MER63 DNA MER1_type -25 1663 7 246 247 12 25 chr3 77476121 77476283 -140560875 + GA-rich Low_complexity Low_complexity 3 162 0 246 350 12 0 chr3 77476294 77476374 -140560784 + GA-rich Low_complexity Low_complexity 2 82 0 835 126 31 185 chr3 77476815 77476884 -140560274 - MER5A DNA MER1_type -1 188 110 2532 158 45 45 chr3 77476884 77477461 -140559697 + L1MA5 LINE L1 5719 6295 -5 835 126 31 185 chr3 77477461 77477613 -140559545 - MER5A DNA MER1_type -79 110 1 463 266 133 17 chr3 77478479 77478712 -140558446 - MLT1L LTR MaLR -1 614 355 324 346 43 0 chr3 77478737 77478899 -140558259 - MLT1K LTR MaLR -321 267 99 3135 180 91 31 chr3 77479047 77479881 -140557277 + L1MC4 LINE L1 7171 7995 0 682 241 101 33 chr3 77480080 77480439 -140556719 + MLT1J2 LTR MaLR 36 450 0 1491 138 42 85 chr3 77480751 77481185 -140555973 + Charlie1b DNA MER1_type 103 517 -6 213 250 19 0 chr3 77481318 77481370 -140555788 + L2 LINE L2 3261 3313 0 371 305 45 45 chr3 77481465 77481734 -140555424 + MLT1I LTR MaLR 18 286 -123 427 264 120 0 chr3 77481860 77481985 -140555173 + MLT1J2 LTR MaLR 164 303 -147 358 321 36 36 chr3 77483118 77483258 -140553900 + MIR3 SINE MIR 21 160 -48 24 0 0 0 chr3 77483581 77483605 -140553553 + AT_rich Low_complexity Low_complexity 1 24 0 198 319 66 33 chr3 77484125 77484216 -140552942 - L2 LINE L2 -12 3301 3208 24 53 0 0 chr3 77486362 77486400 -140550758 + AT_rich Low_complexity Low_complexity 1 38 0 438 238 67 31 chr3 77486428 77486568 -140550590 - MIR SINE MIR -62 146 45 22 56 0 0 chr3 77489377 77489413 -140547745 + AT_rich Low_complexity Low_complexity 1 36 0 715 290 101 4 chr3 77489472 77489710 -140547448 + MIR SINE MIR 2 262 0 440 276 188 16 chr3 77489685 77489877 -140547281 - MIR SINE MIR -19 243 19 * 653 264 152 54 chr3 77490066 77490734 -140546424 - L2 LINE L2 -24 3289 2533 231 281 62 0 chr3 77490737 77490801 -140546357 + L2 LINE L2 3245 3312 -1 2519 61 3 0 chr3 77491690 77492000 -140545158 - AluY SINE Alu 0 311 1 6750 113 20 58 chr3 77492783 77499166 -140537992 + L1PA7 LINE L1 12 6152 -2 1747 156 38 0 chr3 77499325 77499645 -140537513 + Tigger1 DNA MER2_type 1 332 -2086 26 30 0 0 chr3 77499805 77499838 -140537320 + AT_rich Low_complexity Low_complexity 1 33 0 35 41 0 0 chr3 77500737 77500786 -140536372 + AT_rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chr3 77501067 77501096 -140536062 + AT_rich Low_complexity Low_complexity 1 29 0 9952 58 1 3 chr3 77502185 77504283 -140532875 - L1P LINE L1 -3923 2223 2 11808 22 0 1 chr3 77504283 77506254 -140530904 - L1PA3 LINE L1 -245 5910 3941 41306 45 4 1 chr3 77507842 77513981 -140523177 - L1PA3 LINE L1 -3 6152 1 462 249 260 6 chr3 77514335 77514508 -140522650 + MIR SINE MIR 40 256 -6 2162 139 0 0 chr3 77515896 77516197 -140520961 + AluSx SINE Alu 1 301 -11 399 302 41 76 chr3 77516270 77516442 -140520716 + MIR3 SINE MIR 36 201 -7 22 56 0 0 chr3 77516690 77516726 -140520432 + AT_rich Low_complexity Low_complexity 1 36 0 420 129 29 0 chr3 77517564 77517634 -140519524 - AluJ/FRAM SINE Alu -9 303 232 279 54 0 0 chr3 77519471 77519508 -140517650 + (TC)n Simple_repeat Simple_repeat 1 37 0 185 0 0 39 chr3 77519515 77519541 -140517617 + (CACCC)n Simple_repeat Simple_repeat 3 27 0 1069 314 129 33 chr3 77519915 77520790 -140516368 + L2 LINE L2 2200 3186 -127 474 33 0 0 chr3 77520790 77520850 -140516308 + (CA)n Simple_repeat Simple_repeat 2 61 0 1069 314 129 33 chr3 77520850 77520972 -140516186 + L2 LINE L2 3186 3295 -18 182 143 71 0 chr3 77521459 77521501 -140515657 + (CATATA)n Simple_repeat Simple_repeat 2 46 0 4909 128 46 5 chr3 77521501 77522327 -140514831 - Tigger1 DNA MER2_type 0 2418 1559 3524 117 67 0 chr3 77522933 77523529 -140513629 + L1MA5A LINE L1 5657 6292 -5 30 69 0 0 chr3 77523577 77523635 -140513523 + AT_rich Low_complexity Low_complexity 1 58 0 418 127 55 36 chr3 77523636 77523746 -140513412 + L1MD3 LINE L1 7880 7991 -4 421 241 52 26 chr3 77523964 77524080 -140513078 - MIR SINE MIR -66 196 78 235 328 97 30 chr3 77524345 77524479 -140512679 + L2 LINE L2 3100 3242 -30 285 261 0 0 chr3 77524479 77524548 -140512610 - Charlie8 DNA MER1_type -1000 1417 1349 704 253 94 16 chr3 77524699 77524944 -140512214 - Charlie8 DNA MER1_type -2153 264 1 318 145 61 191 chr3 77525018 77525149 -140512009 - MER5B DNA MER1_type -1 177 64 13824 39 10 1 chr3 77528180 77530449 -140506709 + L1P LINE L1 2511 4802 -1344 359 330 174 22 chr3 77580674 77580898 -140456260 + L3 LINE CR1 1238 1495 -82 420 194 48 29 chr3 77582002 77582105 -140455053 + MER34 LTR ERV1 438 542 0 200 276 105 40 chr3 77582243 77582319 -140454839 - L2 LINE L2 -17 3255 3175 1061 275 99 25 chr3 77582319 77582792 -140454366 + L1MC/D LINE L1 5315 5822 -1986 269 222 14 111 chr3 77582898 77583042 -140454116 + HAL1b LINE L1 1194 1323 -25 1327 207 20 33 chr3 77583296 77583595 -140453563 + AluJb SINE Alu 1 295 -17 200 242 76 91 chr3 77583911 77584043 -140453115 + L2 LINE L2 3143 3272 0 2671 71 0 12 chr3 77584073 77584399 -140452759 + L1PA7 LINE L1 5820 6141 -13 201 321 19 0 chr3 77585237 77585290 -140451868 + MIR SINE MIR 23 76 -186 10801 122 19 9 chr3 77585775 77587418 -140449740 - Tigger1 DNA MER2_type -283 2135 476 2157 109 6 10 chr3 77589329 77589640 -140447518 - AluSg SINE Alu 0 310 1 5629 178 20 10 chr3 77589873 77591418 -140445740 - L1 LINE L1 -3404 3444 1884 9364 26 0 1 chr3 77591518 77593140 -140444018 + L1PA3 LINE L1 4291 5910 -245 3776 71 10 12 chr3 77593140 77594424 -140442734 + L1P LINE L1 2 1410 -4736 1289 232 52 69 chr3 77594766 77595232 -140441926 + MER39 LTR ERV1 250 707 0 555 309 130 5 chr3 77595427 77595650 -140441508 - MIR SINE MIR -11 251 1 769 184 24 0 chr3 77596796 77596921 -140440237 - FLAM_A SINE Alu -2 131 4 3550 225 40 54 chr3 77597432 77598769 -140438389 - L1PA12 LINE L1 -4900 2684 2 278 354 50 33 chr3 77598846 77599027 -140438131 - L2 LINE L2 -193 3079 2896 990 192 8 88 chr3 77600152 77600413 -140436745 + MIR SINE MIR 2 241 -21 522 213 82 21 chr3 77600574 77600763 -140436395 - L1MB5 LINE L1 0 6178 5986 4986 74 50 57 chr3 77601128 77601964 -140435194 - SVA Other Other -519 867 38 441 0 0 0 chr3 77601969 77602018 -140435140 + (GGGAGA)n Simple_repeat Simple_repeat 1 49 0 14657 150 13 19 chr3 77602019 77603587 -140433571 - L1P4 LINE L1 -684 5490 3913 2375 74 10 3 chr3 77603587 77603884 -140433274 - AluY SINE Alu -12 299 1 14657 150 13 19 chr3 77603884 77604344 -140432814 - L1P4 LINE L1 -2261 3913 3451 2425 111 54 23 chr3 77604344 77604697 -140432461 - THE1B LTR MaLR 0 364 1 11363 91 35 10 chr3 77604697 77606238 -140430920 - THE1B-int LTR MaLR 0 1580 1 2417 113 48 22 chr3 77606238 77606593 -140430565 - THE1B LTR MaLR 0 364 1 14657 150 13 19 chr3 77606593 77607327 -140429831 - L1P4 LINE L1 -2720 3454 2746 28567 53 39 4 chr3 77608315 77612003 -140425155 + L1P LINE L1 4 3819 -2327 382 332 120 45 chr3 77612158 77612492 -140424666 + L2 LINE L2 2907 3265 -7 208 243 54 95 chr3 77613306 77613380 -140423778 - L2 LINE L2 -3 3269 3199 959 264 153 16 chr3 77613442 77613892 -140423266 + LTR33 LTR ERVL 5 516 -5 210 241 81 69 chr3 77613917 77614004 -140423154 - L2 LINE L2 -259 3054 2967 553 369 21 0 chr3 77614752 77614985 -140422173 + L3 LINE CR1 1268 1505 -72 830 158 0 0 chr3 77615107 77615227 -140421931 + FLAM_C SINE Alu 5 124 -19 722 327 53 46 chr3 77615672 77616431 -140420727 - L2 LINE L2 -2 3270 2508 1141 197 5 18 chr3 77616480 77616698 -140420460 + MER58A DNA MER1_type 1 215 -9 764 276 25 5 chr3 77618181 77618377 -140418781 + MIR SINE MIR 15 214 -48 180 303 79 56 chr3 77621090 77621179 -140415979 - MER5A DNA MER1_type -59 130 40 1157 232 210 3 chr3 77621550 77621903 -140415255 - L1ME3A LINE L1 -34 6136 5711 246 235 0 0 chr3 77623481 77623532 -140413626 + L2 LINE L2 3221 3271 -1 220 303 49 33 chr3 77623571 77623693 -140413465 - L3 LINE CR1 -85 1492 1369 267 293 80 0 chr3 77623829 77623904 -140413254 + L2 LINE L2 3140 3220 -52 242 286 12 48 chr3 77623997 77624081 -140413077 + Charlie7 DNA MER1_type 1 81 -2531 261 257 73 7 chr3 77624087 77624223 -140412935 + Charlie7 DNA MER1_type 2426 2570 -42 519 268 95 29 chr3 77624273 77624479 -140412679 - MIR SINE MIR -34 228 19 4464 156 64 5 chr3 77624819 77625644 -140411514 - L1MB7 LINE L1 -19 6165 5292 22 56 0 0 chr3 77625921 77625957 -140411201 + AT_rich Low_complexity Low_complexity 1 36 0 434 309 116 65 chr3 77626585 77627018 -140410140 - L2 LINE L2 0 3272 2818 220 172 172 47 chr3 77627583 77627647 -140409511 + L2 LINE L2 3197 3268 -4 274 302 157 41 chr3 77627833 77628005 -140409153 - MIR SINE MIR -50 212 21 205 246 101 0 chr3 77628483 77628552 -140408606 - MIR SINE MIR -36 226 151 1801 118 63 17 chr3 77629645 77629932 -140407226 - AluSx SINE Alu -12 300 1 217 258 81 48 chr3 77629934 77630058 -140407100 + L2 LINE L2 2387 2514 -800 2446 135 3 0 chr3 77630165 77630521 -140406637 - L1PA16 LINE L1 -2 6164 5808 203 277 62 0 chr3 77630516 77630581 -140406577 + L2 LINE L2 2581 2649 -665 201 360 0 0 chr3 77630588 77630663 -140406495 + MIR SINE MIR 2 76 -186 189 270 48 63 chr3 77630661 77630724 -140406434 + MIR SINE MIR 201 262 0 * 258 296 148 47 chr3 77630748 77630917 -140406241 + L2 LINE L2 2690 2875 -439 433 344 62 47 chr3 77631101 77631421 -140405737 - L2 LINE L2 0 3272 2948 245 85 0 43 chr3 77631750 77631797 -140405361 - L1MC1 LINE L1 -9 6324 6280 1299 149 68 7 chr3 77631802 77632047 -140405111 - L1MC1 LINE L1 -108 6225 5971 247 326 0 0 chr3 77632067 77632202 -140404956 + C-rich Low_complexity Low_complexity 1 135 0 3764 172 48 57 chr3 77632701 77633471 -140403687 - L1MB5 LINE L1 -142 6032 5257 1239 211 84 19 chr3 77633471 77633794 -140403364 + MER2 DNA MER2_type 1 344 0 3764 172 48 57 chr3 77633794 77634262 -140402896 - L1MB5 LINE L1 -917 5257 4806 2555 113 13 8 chr3 77634262 77634635 -140402523 - THE1C LTR MaLR 0 375 1 3764 172 48 57 chr3 77634635 77635071 -140402087 - L1MB5 LINE L1 -1368 4806 4368 38 22 0 0 chr3 77635093 77635138 -140402020 + AT_rich Low_complexity Low_complexity 1 45 0 363 316 0 9 chr3 77635514 77635628 -140401530 + MIR3 SINE MIR 83 195 -13 189 274 142 9 chr3 77635767 77635873 -140401285 - L2 LINE L2 0 3272 3153 217 290 105 32 chr3 77635938 77636062 -140401096 + MIR3 SINE MIR 5 137 -71 827 306 9 9 chr3 77636771 77636990 -140400168 + MIR SINE MIR 13 231 -31 249 266 16 0 chr3 77637007 77637071 -140400087 + (CACCAT)n Simple_repeat Simple_repeat 5 69 0 216 320 87 39 chr3 77637288 77637391 -140399767 + L2 LINE L2 2865 2972 -300 1754 152 20 10 chr3 77637459 77637756 -140399402 + AluJb SINE Alu 1 300 -12 274 216 0 0 chr3 77638544 77638595 -140398563 - MIR SINE MIR -102 160 110 2260 244 68 108 chr3 77638830 77639241 -140397917 - HAL1 LINE L1 -4 2503 2077 4684 164 16 12 chr3 77639241 77640125 -140397033 + L1MC1 LINE L1 5447 6333 0 2260 244 68 108 chr3 77640125 77640512 -140396646 - HAL1 LINE L1 -430 2077 1676 3150 91 5 11 chr3 77640512 77640961 -140396197 - L1PA10 LINE L1 -5 6163 5718 2260 244 68 108 chr3 77640961 77641584 -140395574 - HAL1 LINE L1 -831 1676 1138 295 234 0 3 chr3 77641803 77641910 -140395248 + L1M3a LINE L1 1604 2076 -4802 1300 239 60 24 chr3 77641934 77642382 -140394776 + L1ME3A LINE L1 5653 6146 -21 685 307 150 20 chr3 77642551 77642991 -140394167 - HAL1 LINE L1 -2003 504 8 41622 38 4 2 chr3 77643608 77649518 -140387640 + L1PA3 LINE L1 231 6152 -3 5796 77 45 36 chr3 77651668 77652613 -140384545 + SVA Other Other 433 1386 0 971 181 43 34 chr3 77652903 77653147 -140384011 + MER33 DNA MER1_type 1 230 -94 2361 88 32 15 chr3 77653156 77653759 -140383399 + L1PA11 LINE L1 5475 6174 0 585 215 27 34 chr3 77653759 77653908 -140383250 + L2 LINE L2 3160 3307 -6 762 261 114 22 chr3 77655310 77655416 -140381742 - L1ME4a LINE L1 -52 6069 5974 1434 168 71 24 chr3 77655416 77655713 -140381445 - AluJo SINE Alu -1 311 1 762 261 114 22 chr3 77655713 77656097 -140381061 - L1ME4a LINE L1 -147 5974 5534 3549 112 69 2 chr3 77656206 77656802 -140380356 + L1MA5A LINE L1 5657 6292 -5 23 86 0 0 chr3 77656850 77656908 -140380250 + AT_rich Low_complexity Low_complexity 1 58 0 450 127 55 36 chr3 77656909 77657019 -140380139 + L1MD3 LINE L1 7880 7991 -4 422 241 52 26 chr3 77657237 77657353 -140379805 - MIR SINE MIR -66 196 78 230 328 97 30 chr3 77657618 77657752 -140379406 + L2 LINE L2 3100 3242 -30 309 261 0 0 chr3 77657752 77657821 -140379337 - Charlie8 DNA MER1_type -989 1428 1360 585 246 35 23 chr3 77657971 77658142 -140379016 - Charlie8 DNA MER1_type -2153 264 92 23379 48 2 4 chr3 77658264 77661989 -140375169 + L1PA3 LINE L1 2419 6155 0 441 0 0 0 chr3 77662252 77662301 -140374857 + (CA)n Simple_repeat Simple_repeat 2 50 0 274 337 93 17 chr3 77663000 77663172 -140373986 - L2 LINE L2 -3 3310 3126 2361 100 0 0 chr3 77665884 77666193 -140370965 + AluSc SINE Alu 1 309 0 332 261 23 14 chr3 77671220 77671376 -140365782 - MIR SINE MIR -77 185 56 274 291 60 32 chr3 77671512 77671662 -140365496 + MIR3 SINE MIR 15 173 -65 261 0 0 0 chr3 77672791 77672820 -140364338 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 294 315 20 55 chr3 77673163 77673309 -140363849 + MER5A DNA MER1_type 47 187 -2 2878 9 3 0 chr3 77673344 77673661 -140363497 + AluYb8 SINE Alu 1 318 0 22 0 0 0 chr3 77673709 77673731 -140363427 + AT_rich Low_complexity Low_complexity 1 22 0 396 234 28 19 chr3 77674156 77674263 -140362895 + MLT1J2 LTR MaLR 14 121 -329 1258 124 38 5 chr3 77674263 77674473 -140362685 - AluSg/x SINE Alu -9 303 87 59 78 0 0 chr3 77674573 77674702 -140362456 + AT_rich Low_complexity Low_complexity 1 129 0 1132 179 30 8 chr3 77674747 77674981 -140362177 - L1P LINE L1 -5907 239 1 469 249 260 6 chr3 77675331 77675504 -140361654 + MIR SINE MIR 40 256 -6 2080 140 3 0 chr3 77676892 77677192 -140359966 + AluSx SINE Alu 1 301 -11 372 310 47 76 chr3 77677265 77677436 -140359722 + MIR3 SINE MIR 36 201 -7 22 56 0 0 chr3 77677684 77677720 -140359438 + AT_rich Low_complexity Low_complexity 1 36 0 420 129 29 0 chr3 77678558 77678628 -140358530 - AluJ/FRAM SINE Alu -9 303 232 279 54 0 0 chr3 77680463 77680500 -140356658 + (TC)n Simple_repeat Simple_repeat 1 37 0 185 0 0 39 chr3 77680507 77680533 -140356625 + (CACCC)n Simple_repeat Simple_repeat 3 27 0 1020 314 131 33 chr3 77680907 77681781 -140355377 + L2 LINE L2 2200 3186 -127 474 33 0 0 chr3 77681781 77681841 -140355317 + (CA)n Simple_repeat Simple_repeat 2 61 0 1020 314 131 33 chr3 77681841 77681963 -140355195 + L2 LINE L2 3186 3295 -18 182 143 71 0 chr3 77682450 77682492 -140354666 + (CATATA)n Simple_repeat Simple_repeat 2 46 0 1603 125 71 11 chr3 77682492 77682773 -140354385 - Tigger1 DNA MER2_type 0 2418 2121 2597 180 15 17 chr3 77682968 77683497 -140353661 - Tigger1 DNA MER2_type -1890 528 1 1355 193 57 17 chr3 77684513 77684809 -140352349 - AluJb SINE Alu -3 309 2 1059 265 41 48 chr3 77688132 77688544 -140348614 + MLT1I LTR MaLR 1 409 0 414 292 21 21 chr3 77688745 77688889 -140348269 + MIR SINE MIR 89 232 -30 852 163 66 6 chr3 77689386 77689552 -140347606 - MER58 DNA MER1_type -165 176 1 222 208 0 0 chr3 77689554 77689602 -140347556 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 548 170 9 2 chr3 77689603 77689719 -140347439 + L1MC4 LINE L1 7844 8034 -8 269 252 201 37 chr3 77690442 77690656 -140346502 - MIR SINE MIR -13 249 1 463 301 113 33 chr3 77691847 77692060 -140345098 + MIR SINE MIR 3 232 -30 664 286 146 29 chr3 77693426 77693877 -140343281 - L3 LINE CR1 -194 1383 880 270 237 0 0 chr3 77693843 77693902 -140343256 + L2 LINE L2 2592 2650 -664 * 1502 125 4 12 chr3 77693917 77694157 -140343001 - LTR1B LTR ERV1 -588 238 1 406 252 128 30 chr3 77694177 77694411 -140342747 + L1ME3 LINE L1 5899 6155 -7 357 184 89 76 chr3 77695446 77695623 -140341535 - MER8 DNA MER2_type 0 239 2 356 293 85 24 chr3 77695626 77695790 -140341368 - MIR SINE MIR -71 191 18 204 40 0 0 chr3 77696254 77696279 -140340879 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4572 62 11 11 chr3 77696298 77696906 -140340252 - L1PA7 LINE L1 0 6154 5547 2401 31 7 3 chr3 77696950 77697241 -140339917 - L1PA2 LINE L1 0 6155 5864 36 40 0 0 chr3 77697315 77697365 -140339793 + AT_rich Low_complexity Low_complexity 1 50 0 2546 201 71 10 chr3 77697409 77698077 -140339081 - Tigger7 DNA MER2_type 0 2587 1 352 225 36 65 chr3 77698077 77698215 -140338943 + L2 LINE L2 3173 3306 -7 1381 213 140 45 chr3 77698234 77698741 -140338417 - MER34B LTR ERV1 -6 559 5 4849 103 25 22 chr3 77698866 77699651 -140337507 - L1MA4A LINE L1 -1 6302 5515 1612 119 4 0 chr3 77699652 77699904 -140337254 + L1P4 LINE L1 5522 5774 -392 1141 138 17 0 chr3 77699927 77700108 -140337050 - L1PA16 LINE L1 -15 6151 5968 9626 172 35 9 chr3 77700494 77700961 -140336197 - L1MA4A LINE L1 -972 5174 4721 216 0 0 0 chr3 77700961 77700985 -140336173 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9626 172 35 9 chr3 77700985 77702606 -140334552 - L1MA4A LINE L1 -1425 4721 3030 416 118 9 55 chr3 77702735 77702845 -140334313 - L1P LINE L1 -3615 2531 2427 4399 115 20 6 chr3 77702857 77703571 -140333587 + HSMAR2 DNA Mariner 574 1297 -5 2282 104 3 19 chr3 77704504 77704822 -140332336 - AluSp SINE Alu 0 313 1 27477 25 1 2 chr3 77706946 77711176 -140325982 - L1PA2 LINE L1 -1 6154 1928 233 231 138 0 chr3 77711290 77711355 -140325803 - Charlie8 DNA MER1_type -2343 74 1 318 145 61 191 chr3 77711429 77711560 -140325598 - MER5B DNA MER1_type -1 177 64 31 68 0 0 chr3 77714662 77714721 -140322437 + AT_rich Low_complexity Low_complexity 1 59 0 256 293 121 0 chr3 77714786 77714902 -140322256 + L1MC/D LINE L1 5694 5823 -1985 40 49 0 0 chr3 77715278 77715339 -140321819 + AT_rich Low_complexity Low_complexity 1 61 0 667 272 58 36 chr3 77715552 77715776 -140321382 + L2 LINE L2 3083 3311 -2 415 244 177 62 chr3 77715849 77715958 -140321200 - MIR SINE MIR -6 256 161 1225 126 5 10 chr3 77715958 77716164 -140320994 - L1MA6 LINE L1 -5 6295 6091 415 244 177 62 chr3 77716164 77716263 -140320895 - MIR SINE MIR -101 161 24 2096 90 20 3 chr3 77716264 77716563 -140320595 - AluY SINE Alu -6 305 2 21 36 0 0 chr3 77716976 77717004 -140320154 + AT_rich Low_complexity Low_complexity 1 28 0 272 316 33 33 chr3 77717917 77718069 -140319089 + L2 LINE L2 3119 3270 -43 473 323 12 6 chr3 77718193 77718360 -140318798 - MIR SINE MIR -16 246 79 27 29 0 0 chr3 77719207 77719241 -140317917 + AT_rich Low_complexity Low_complexity 1 34 0 339 367 31 59 chr3 77720372 77720658 -140316500 - L2 LINE L2 0 3272 2995 1326 253 41 19 chr3 77720836 77721556 -140315602 - L1M2 LINE L1 -5832 1017 199 1811 136 3 21 chr3 77721758 77722119 -140315039 - MER4A LTR ERV1 0 664 252 752 129 0 52 chr3 77722145 77722300 -140314858 - MER4A LTR ERV1 -517 147 1 269 250 145 0 chr3 77722311 77722435 -140314723 - MLT1K LTR MaLR -91 497 356 3543 103 23 40 chr3 77722449 77723023 -140314135 - MER34B LTR ERV1 -1 564 1 233 197 42 84 chr3 77723079 77723150 -140314008 - MLT1K LTR MaLR -424 164 97 2343 92 13 0 chr3 77723196 77723501 -140313657 + AluSp SINE Alu 1 309 -4 185 188 0 0 chr3 77723579 77723611 -140313547 - L2 LINE L2 -13 3300 3269 410 133 100 11 chr3 77723808 77723898 -140313260 + MER4A LTR ERV1 1 98 -566 1781 139 5 26 chr3 77723898 77724252 -140312906 + MER4A LTR ERV1 261 664 0 1031 234 16 76 chr3 77724376 77724756 -140312402 - MER34 LTR ERV1 -183 359 3 3799 69 2 0 chr3 77724846 77725338 -140311820 - L1PA7 LINE L1 0 6154 5662 308 343 48 29 chr3 77725369 77725576 -140311582 + L2 LINE L2 2591 2801 -513 254 274 162 26 chr3 77726099 77726216 -140310942 + L2 LINE L2 3139 3271 -1 240 184 0 0 chr3 77726252 77726301 -140310857 + (TG)n Simple_repeat Simple_repeat 2 50 0 41263 43 5 1 chr3 77726894 77733025 -140304133 + L1PA4 LINE L1 3 6160 0 22 70 0 0 chr3 77733358 77733401 -140303757 + AT_rich Low_complexity Low_complexity 1 43 0 416 234 102 7 chr3 77733496 77733633 -140303525 - MER103 DNA DNA 0 166 17 339 243 77 81 chr3 77733840 77734099 -140303059 + L1MC4a LINE L1 4966 5223 -923 229 279 15 15 chr3 77734143 77734211 -140302947 + (TA)n Simple_repeat Simple_repeat 2 69 0 3512 260 43 29 chr3 77734211 77735409 -140301749 + L1MC4a LINE L1 5368 6582 -1226 679 215 189 5 chr3 77735831 77735911 -140301247 - MIR SINE MIR -9 253 189 243 0 0 0 chr3 77735911 77735938 -140301220 + (TG)n Simple_repeat Simple_repeat 2 28 0 679 215 189 5 chr3 77735938 77736048 -140301110 - MIR SINE MIR -73 189 28 247 248 256 8 chr3 77736284 77736401 -140300757 - L2 LINE L2 -2455 859 714 249 347 94 20 chr3 77736411 77736656 -140300502 + L2 LINE L2 3028 3290 -23 351 280 56 9 chr3 77737095 77737202 -140299956 - MIR3 SINE MIR -89 119 8 294 303 128 37 chr3 77737280 77737468 -140299690 - MIR SINE MIR 0 262 58 329 282 0 0 chr3 77738542 77738613 -140298545 + L2 LINE L2 3243 3313 0 373 275 140 30 chr3 77738738 77738974 -140298184 - MIR SINE MIR 0 262 1 582 238 169 11 chr3 77741794 77741983 -140295175 - MIR SINE MIR -10 252 34 590 303 66 29 chr3 77742113 77742354 -140294804 - MIR SINE MIR 0 262 13 522 308 111 47 chr3 77742821 77743182 -140293976 - L3 LINE CR1 -3 1574 1191 420 301 44 24 chr3 77743432 77743632 -140293526 + MIR SINE MIR 10 212 -50 276 281 83 10 chr3 77743783 77743879 -140293279 + L2 LINE L2 3163 3265 -7 207 224 26 79 chr3 77743908 77743984 -140293174 - L3 LINE CR1 -400 1177 1106 197 286 0 36 chr3 77744433 77744489 -140292669 + L2 LINE L2 3210 3263 -9 2139 70 0 0 chr3 77746021 77746279 -140290879 + AluY SINE Alu 39 296 -15 264 236 0 0 chr3 77746927 77747037 -140290121 + A-rich Low_complexity Low_complexity 1 110 0 233 309 127 0 chr3 77747776 77747886 -140289272 - MLT1K LTR MaLR -462 126 3 206 139 0 28 chr3 77747940 77747976 -140289182 + (TTCTC)n Simple_repeat Simple_repeat 5 39 0 567 260 40 34 chr3 77748367 77748544 -140288614 + MER5B DNA MER1_type 1 178 0 4273 64 21 2 chr3 77749365 77749897 -140287261 + L1PA10 LINE L1 5627 6168 0 227 273 68 11 chr3 77750069 77750157 -140287001 - MIR3 SINE MIR -27 181 89 292 310 9 0 chr3 77750418 77750531 -140286627 + MER103 DNA DNA 1 114 -52 234 91 0 0 chr3 77750698 77750731 -140286427 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 216 86 0 0 chr3 77750740 77750775 -140286383 + (TG)n Simple_repeat Simple_repeat 1 35 0 778 216 17 11 chr3 77752333 77752509 -140284649 - MER5B DNA MER1_type -1 177 1 219 275 0 0 chr3 77753593 77753633 -140283525 + L2 LINE L2 3222 3261 -11 2010 143 135 21 chr3 77753749 77754133 -140283025 - MSTA LTR MaLR 0 428 1 329 0 0 0 chr3 77754714 77754755 -140282403 - L1PA4 LINE L1 -2 6153 6113 2090 106 0 0 chr3 77754755 77755030 -140282128 - AluSx SINE Alu -37 275 1 340 241 175 22 chr3 77755993 77756130 -140281028 - MIR SINE MIR -12 250 93 922 266 54 61 chr3 77757356 77757698 -140279460 + L2 LINE L2 2330 2670 -644 1382 128 40 20 chr3 77757698 77757947 -140279211 - L1MA7 LINE L1 0 6291 6038 922 266 54 61 chr3 77757947 77758033 -140279125 + L2 LINE L2 2670 2755 -559 2247 107 7 3 chr3 77758036 77758344 -140278814 - AluSp SINE Alu -4 309 1 410 267 30 0 chr3 77758428 77758559 -140278599 + L1 LINE L1 4143 4277 -1869 253 255 45 69 chr3 77758588 77758835 -140278323 + L1 LINE L1 4248 4488 -1658 1435 210 251 38 chr3 77758839 77759286 -140277872 - MLT1F LTR MaLR 0 542 1 401 266 33 5 chr3 77759286 77759420 -140277738 + L1 LINE L1 4490 4623 -1523 722 263 45 30 chr3 77760045 77760243 -140276915 + MLT1I LTR MaLR 77 277 -132 2371 82 0 7 chr3 77760341 77760647 -140276511 + AluSx SINE Alu 1 304 -8 248 239 91 0 chr3 77760946 77761034 -140276124 + MLT1I LTR MaLR 52 147 -262 319 331 48 69 chr3 77761038 77761328 -140275830 - L1MDa LINE L1 -5900 640 357 441 268 78 0 chr3 77761652 77761805 -140275353 + MLT1I LTR MaLR 245 409 0 4348 71 5 27 chr3 77763240 77763800 -140273358 - LTR14 LTR ERVK 0 548 1 330 276 149 17 chr3 77764287 77764461 -140272697 - MIR SINE MIR -54 208 12 1676 215 130 36 chr3 77765678 77766230 -140270928 - MLT1G LTR MaLR -1 589 1 428 334 89 74 chr3 77766446 77766838 -140270320 + L2 LINE L2 2866 3263 -9 485 313 48 44 chr3 77766854 77767081 -140270077 - L2 LINE L2 -23 3249 3022 301 198 123 0 chr3 77767706 77767787 -140269371 - MIR SINE MIR -75 187 97 669 265 119 55 chr3 77767799 77768218 -140268940 - L2 LINE L2 -3 3310 2865 254 275 128 37 chr3 77768614 77768723 -140268435 - L2 LINE L2 0 3272 3154 1936 139 7 7 chr3 77768824 77769119 -140268039 - AluJb SINE Alu -17 295 1 263 267 92 17 chr3 77769923 77770043 -140267115 + L2 LINE L2 3185 3313 0 379 300 58 40 chr3 77770410 77770633 -140266525 + MLT1J LTR MaLR 226 452 -59 499 277 50 0 chr3 77770651 77770792 -140266366 + Charlie4a DNA MER1_type 25 172 -336 19277 144 27 16 chr3 77770798 77771617 -140265541 + ERVL-B2 LTR ERVL 2621 3430 -2334 2757 16 9 9 chr3 77771617 77771935 -140265223 + AluYb8 SINE Alu 1 318 0 19277 144 27 16 chr3 77771935 77771949 -140265209 + ERVL-B2 LTR ERVL 3430 3442 -2322 2238 127 46 32 chr3 77771949 77772319 -140264839 - THE1C LTR MaLR 0 375 1 19277 144 27 16 chr3 77772319 77774596 -140262562 + ERVL-B2 LTR ERVL 3442 5764 0 1144 141 106 18 chr3 77774596 77774683 -140262475 + Ricksha DNA DNA 332 438 -816 1378 218 44 14 chr3 77774683 77774976 -140262182 + MLT2B2 LTR ERVL 129 430 -85 563 0 15 0 chr3 77774984 77775051 -140262107 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 1245 204 32 35 chr3 77775086 77775430 -140261728 + Charlie4a DNA MER1_type 166 508 0 420 182 12 2 chr3 77776527 77776612 -140260546 - MLT1F LTR MaLR 0 542 476 835 216 22 6 chr3 77777509 77777690 -140259468 + MIR SINE MIR 58 241 -21 195 298 48 12 chr3 77777853 77777937 -140259221 + MIR SINE MIR 37 123 -85 5909 101 45 19 chr3 77778395 77779200 -140257958 - LTR12 LTR ERV1 0 826 1 256 286 95 19 chr3 77779491 77779596 -140257562 + L2 LINE L2 3157 3269 -3 1069 171 9 57 chr3 77780843 77780876 -140256282 - MER20 DNA MER1_type -1 218 185 4341 153 9 0 chr3 77780876 77781505 -140255653 - MER41B LTR ERV1 0 635 1 1069 171 9 57 chr3 77781505 77781699 -140255459 - MER20 DNA MER1_type -34 185 2 2289 112 3 0 chr3 77781704 77782008 -140255150 + AluSq SINE Alu 1 305 -8 1919 200 29 31 chr3 77782288 77782703 -140254455 - MLT2D LTR ERVL 0 414 1 2929 44 6 0 chr3 77783397 77783760 -140253398 - LTR10C LTR ERV1 -153 438 74 22 0 0 0 chr3 77783862 77783884 -140253274 + AT_rich Low_complexity Low_complexity 1 22 0 749 332 24 3 chr3 77784166 77784455 -140252703 + LTR16A1 LTR ERVL 161 455 -2 416 290 125 40 chr3 77784939 77785476 -140251682 - L2 LINE L2 -21 3251 2578 688 269 21 21 chr3 77785901 77786094 -140251064 - MIR SINE MIR -36 226 34 190 173 19 19 chr3 77786156 77786208 -140250950 + CT-rich Low_complexity Low_complexity 3 54 0 196 268 158 0 chr3 77786423 77786505 -140250653 - MIR SINE MIR -61 147 53 217 224 15 60 chr3 77787153 77787220 -140249938 - MIR SINE MIR -20 242 179 353 315 100 42 chr3 77787242 77787623 -140249535 - L2 LINE L2 -48 3265 2863 189 191 0 48 chr3 77787746 77787788 -140249370 - L2 LINE L2 -18 3295 3256 185 229 0 62 chr3 77788037 77788085 -140249073 - L2 LINE L2 -587 2727 2683 309 26 0 0 chr3 77788129 77788167 -140248991 + (CA)n Simple_repeat Simple_repeat 1 38 0 189 338 14 14 chr3 77788177 77788248 -140248910 - MIR SINE MIR -112 96 26 637 240 68 0 chr3 77789439 77789585 -140247573 + MIR SINE MIR 74 229 -33 219 295 179 0 chr3 77789966 77790061 -140247097 + MIR SINE MIR 103 214 -48 4179 139 20 27 chr3 77790227 77790926 -140246232 - MER72 LTR ERV1 -28 694 1 199 299 86 26 chr3 77791068 77791185 -140245973 - L2 LINE L2 -28 3244 3121 228 227 40 27 chr3 77791361 77791436 -140245722 - MLT1L LTR MaLR -416 199 124 392 301 119 11 chr3 77792182 77792358 -140244800 - MIR SINE MIR -53 209 15 275 273 23 0 chr3 77792430 77792518 -140244640 + MIR SINE MIR 93 182 -80 1992 131 0 8 chr3 77793590 77793858 -140243300 - AluSx SINE Alu -33 279 14 330 254 94 29 chr3 77794047 77794185 -140242973 - MIR SINE MIR -72 190 44 371 259 149 29 chr3 77794270 77794444 -140242714 + MIR SINE MIR 21 215 -47 249 359 0 0 chr3 77794455 77794533 -140242625 + MIR3 SINE MIR 112 189 -19 1028 147 0 0 chr3 77794559 77794715 -140242443 - MER45A DNA AcHobo -20 158 3 363 276 52 8 chr3 77795247 77795381 -140241777 + MER91A DNA MER1_type 1 140 -56 298 319 192 6 chr3 77796238 77796561 -140240597 - L2 LINE L2 -2 3270 2888 1854 144 10 14 chr3 77796731 77797022 -140240136 + AluJb SINE Alu 6 295 -17 426 290 28 28 chr3 77797949 77798125 -140239033 - MIR SINE MIR -68 194 19 1263 196 131 56 chr3 77798909 77798956 -140238202 - MLT1C LTR MaLR -6 461 419 2435 75 3 0 chr3 77798956 77799249 -140237909 + AluY SINE Alu 1 294 -17 1263 196 131 56 chr3 77799249 77799459 -140237699 - MLT1C LTR MaLR -48 419 226 378 0 0 0 chr3 77799459 77799501 -140237657 + (TG)n Simple_repeat Simple_repeat 2 43 0 1263 196 131 56 chr3 77799501 77799671 -140237487 - MLT1C LTR MaLR -241 226 1 292 284 207 30 chr3 77799949 77800105 -140237053 + L2 LINE L2 2867 2994 -319 2180 130 0 10 chr3 77800105 77800413 -140236745 - AluJb SINE Alu -6 306 2 292 284 207 30 chr3 77800413 77800527 -140236631 + L2 LINE L2 2994 3185 -128 408 289 78 11 chr3 77800573 77800857 -140236301 + L1M4 LINE L1 2923 3225 -2921 2048 117 4 11 chr3 77800922 77801196 -140235962 + AluSx SINE Alu 1 272 -40 441 310 57 50 chr3 77801199 77801224 -140235934 + L1M4 LINE L1 3466 3489 -2657 2354 114 0 0 chr3 77801224 77801532 -140235626 + AluSq SINE Alu 3 310 -3 441 310 57 50 chr3 77801532 77801806 -140235352 + L1M4 LINE L1 3489 3767 -2379 421 258 64 64 chr3 77802319 77802586 -140234572 - L2 LINE L2 -194 3078 2812 442 249 40 17 chr3 77802661 77802864 -140234294 + MIR SINE MIR 7 262 0 22 0 0 0 chr3 77803235 77803257 -140233901 + AT_rich Low_complexity Low_complexity 1 22 0 1845 145 14 20 chr3 77803431 77803727 -140233431 - AluJb SINE Alu -18 294 1 399 266 162 7 chr3 77803733 77803887 -140233271 - L1ME LINE L1 -301 5820 5643 687 277 85 5 chr3 77804145 77804369 -140232789 - MIR SINE MIR 0 262 21 2301 124 21 13 chr3 77804778 77805150 -140232008 - THE1C LTR MaLR 0 375 1 526 220 196 6 chr3 77805366 77805539 -140231619 - MIR SINE MIR -13 249 44 437 151 0 0 chr3 77805711 77805784 -140231374 + MIR SINE MIR 68 140 -122 212 195 49 0 chr3 77806061 77806102 -140231056 - MIR SINE MIR -28 234 192 329 248 2 32 chr3 77806740 77806849 -140230309 - MIR SINE MIR -62 146 57 358 194 290 0 chr3 77807408 77807501 -140229657 + MIR SINE MIR 55 174 -88 244 260 41 55 chr3 77807600 77807673 -140229485 + MIR SINE MIR 42 113 -95 561 262 153 5 chr3 77807775 77807977 -140229181 - MIR SINE MIR -5 257 26 1453 238 43 49 chr3 77807981 77808426 -140228732 - MLT1E LTR MaLR -4 589 148 560 213 65 47 chr3 77808462 77808631 -140228527 - MLT1E LTR MaLR -421 172 1 593 246 133 25 chr3 77808920 77809160 -140227998 - MLT1K LTR MaLR -6 582 317 296 271 93 9 chr3 77809386 77809493 -140227665 + MER103 DNA DNA 31 146 -20 2351 124 0 0 chr3 77809633 77809940 -140227218 + AluSx SINE Alu 1 307 -5 260 232 168 32 chr3 77810138 77810233 -140226925 + MIR SINE MIR 19 126 -82 726 331 47 11 chr3 77810320 77810682 -140226476 + L1MEc LINE L1 -99 275 -5986 603 258 28 38 chr3 77811040 77811294 -140225864 + L1MEc LINE L1 532 754 -5316 198 283 0 22 chr3 77811297 77811343 -140225815 + MIR SINE MIR 217 261 -1 348 290 114 0 chr3 77811503 77811634 -140225524 + MIR3 SINE MIR 58 203 -5 278 188 143 0 chr3 77812106 77812176 -140224982 + MIR SINE MIR 70 149 -59 1262 228 44 80 chr3 77812176 77812627 -140224531 + LTR16A1 LTR ERVL 14 448 -9 317 302 21 0 chr3 77812631 77812727 -140224431 + MIR SINE MIR 149 246 -16 435 284 26 68 chr3 77812920 77813110 -140224048 - L1ME4a LINE L1 -3 6118 5937 280 250 0 26 chr3 77813111 77813187 -140223971 + (CATATA)n Simple_repeat Simple_repeat 4 77 0 955 297 60 39 chr3 77813301 77813870 -140223288 - L1MC4a LINE L1 -1893 5915 5335 391 353 42 20 chr3 77814313 77814619 -140222539 + L1MC4a LINE L1 5581 5893 -1915 206 204 0 23 chr3 77814930 77814974 -140222184 - L2 LINE L2 -10 3303 3261 * 254 248 291 0 chr3 77814943 77815060 -140222098 - MIR SINE MIR -16 246 96 686 203 14 0 chr3 77815294 77815442 -140221716 - MER3 DNA MER1_type -51 158 9 485 288 68 16 chr3 77815455 77815646 -140221512 + MIR SINE MIR 31 231 -31 390 192 136 40 chr3 77815702 77815827 -140221331 + MIR SINE MIR 84 220 -42 1437 131 165 11 chr3 77816047 77816307 -140220851 + AluSg SINE Alu 1 300 0 802 222 16 21 chr3 77816320 77816514 -140220644 - L1ME3A LINE L1 -34 6136 5944 826 337 14 28 chr3 77816528 77816781 -140220377 + L1MC4a LINE L1 5477 5723 -2085 2376 114 0 0 chr3 77816781 77817089 -140220069 + AluSq SINE Alu 1 308 -5 826 337 14 28 chr3 77817089 77817262 -140219896 + L1MC4a LINE L1 5723 5897 -1911 296 87 0 0 chr3 77818044 77818090 -140219068 + MIR SINE MIR 99 144 -118 389 286 16 106 chr3 77818124 77818379 -140218779 + MIR SINE MIR 31 262 0 372 284 94 0 chr3 77818391 77818518 -140218640 - L2 LINE L2 0 3313 3175 1688 243 31 53 chr3 77818727 77819307 -140217851 + L1ME3 LINE L1 5546 6112 -50 2286 101 0 3 chr3 77819330 77819628 -140217530 - AluSx SINE Alu -15 297 1 910 197 62 122 chr3 77820319 77820755 -140216403 - LTR7 LTR ERV1 -40 410 1 3450 109 11 9 chr3 77820755 77821295 -140215863 - HERVH LTR ERV1 0 7713 7173 319 137 0 0 chr3 77821296 77821347 -140215811 - HERVH LTR ERV1 0 7713 7663 * 13826 146 6 23 chr3 77821341 77823695 -140213463 - HERVH LTR ERV1 -765 6948 4636 541 350 92 13 chr3 77824177 77824569 -140212589 - L2 LINE L2 0 3272 2850 534 300 63 58 chr3 77824572 77825019 -140212139 + L2 LINE L2 2818 3266 -47 1150 264 109 39 chr3 77825031 77825228 -140211930 - L2 LINE L2 -470 2844 2662 1728 143 57 46 chr3 77825228 77825599 -140211559 + THE1C LTR MaLR 1 375 0 1150 264 109 39 chr3 77825599 77826072 -140211086 - L2 LINE L2 -652 2662 2127 234 292 79 0 chr3 77826089 77826178 -140210980 - L2 LINE L2 -248 3024 2929 1838 128 11 64 chr3 77826198 77826574 -140210584 + L1MC3 LINE L1 7430 7785 0 231 36 0 0 chr3 77826606 77826634 -140210524 + (CA)n Simple_repeat Simple_repeat 1 28 0 413 267 129 0 chr3 77826993 77827109 -140210049 + MIR SINE MIR 23 153 -109 1640 109 45 0 chr3 77827116 77827337 -140209821 + AluSx SINE Alu 1 231 -81 322 293 61 0 chr3 77827921 77828020 -140209138 + MIR SINE MIR 91 195 -67 448 256 132 31 chr3 77828027 77828211 -140208947 + MIR SINE MIR 3 210 -52 521 274 81 36 chr3 77828497 77828547 -140208611 - MIR SINE MIR -7 255 209 405 0 0 0 chr3 77828547 77828592 -140208566 + (CA)n Simple_repeat Simple_repeat 1 45 0 521 274 81 36 chr3 77828592 77828764 -140208394 - MIR SINE MIR -53 209 23 1639 127 0 41 chr3 77829345 77829612 -140207546 - AluJo SINE Alu -6 306 51 271 261 14 0 chr3 77829629 77829698 -140207460 + CT-rich Low_complexity Low_complexity 3 72 0 22 0 0 0 chr3 77830522 77830544 -140206614 + GC_rich Low_complexity Low_complexity 1 22 0 2493 80 0 89 chr3 77831042 77831456 -140205702 - MER51B LTR ERV1 0 377 1 346 209 0 0 chr3 77831470 77831537 -140205621 - MIR SINE MIR -109 153 87 240 253 179 0 chr3 77831715 77831810 -140205348 - L2 LINE L2 0 3313 3202 372 348 15 0 chr3 77831820 77831955 -140205203 - MIR3 SINE MIR -57 151 15 1470 157 4 28 chr3 77832147 77832402 -140204756 + AluJo SINE Alu 64 312 0 2364 82 10 0 chr3 77832432 77832726 -140204432 - AluSq SINE Alu -16 297 1 329 352 74 6 chr3 77832733 77832895 -140204263 - L1ME4a LINE L1 -5 6116 5944 2127 114 4 0 chr3 77832968 77833269 -140203889 + AluSx SINE Alu 1 302 0 346 308 213 0 chr3 77833295 77833506 -140203652 - MIR SINE MIR 0 262 7 838 209 39 11 chr3 77833763 77833945 -140203213 - MER53 DNA DNA 0 189 3 294 115 0 0 chr3 77834020 77834072 -140203086 + (CA)n Simple_repeat Simple_repeat 1 52 0 1779 160 7 3 chr3 77835362 77835655 -140201503 + AluJb SINE Alu 11 304 -8 625 301 44 5 chr3 77836962 77837165 -140199993 + L2 LINE L2 3103 3313 0 2151 115 6 10 chr3 77837469 77837781 -140199377 - AluSx SINE Alu -1 311 1 186 232 29 101 chr3 77837806 77837875 -140199283 - L2 LINE L2 -1 3312 3249 247 311 121 23 chr3 77837917 77838049 -140199109 - MIR SINE MIR -29 233 89 675 306 18 27 chr3 77839116 77839338 -140197820 + MIR SINE MIR 21 240 -22 192 191 43 21 chr3 77839304 77839351 -140197807 + L2 LINE L2 3211 3258 -14 * 408 271 66 31 chr3 77840469 77840639 -140196519 + MIR SINE MIR 8 189 -37 478 255 132 20 chr3 77840706 77840910 -140196248 - MIR SINE MIR -34 228 2 886 201 11 6 chr3 77841657 77841831 -140195327 + MER5B DNA MER1_type 4 178 0 207 279 115 10 chr3 77841922 77842026 -140195132 + MER91C DNA MER1_type 26 140 0 324 271 42 34 chr3 77842039 77842157 -140195001 - MIR SINE MIR -21 241 123 292 100 183 0 chr3 77842182 77842242 -140194916 - MER58 DNA MER1_type -83 258 188 22 0 0 0 chr3 77843002 77843024 -140194134 + AT_rich Low_complexity Low_complexity 1 22 0 620 219 27 20 chr3 77843076 77843222 -140193936 - MER45A DNA AcHobo 0 178 32 487 323 89 50 chr3 77843402 77843898 -140193260 + L2 LINE L2 2671 3270 -2 196 216 0 0 chr3 77845219 77845256 -140191902 - L2 LINE L2 -11 3302 3266 510 17 0 0 chr3 77845424 77845483 -140191675 + (TC)n Simple_repeat Simple_repeat 2 60 0 388 338 62 0 chr3 77845957 77846102 -140191056 - MIR SINE MIR -44 218 65 496 324 114 16 chr3 77846615 77846930 -140190228 - L2 LINE L2 -7 3265 2920 27 0 0 0 chr3 77847538 77847565 -140189593 + AT_rich Low_complexity Low_complexity 1 27 0 286 120 0 0 chr3 77847608 77847658 -140189500 - Alu SINE Alu 0 302 253 524 220 240 0 chr3 77848593 77848743 -140188415 - MER5A DNA MER1_type 0 189 4 225 0 0 0 chr3 77849033 77849058 -140188100 + (A)n Simple_repeat Simple_repeat 1 25 0 610 341 98 14 chr3 77850063 77850432 -140186726 + MLT1J LTR MaLR 112 511 0 193 378 27 9 chr3 77850453 77850564 -140186594 + MER5A DNA MER1_type 39 151 -38 341 269 43 0 chr3 77850624 77850717 -140186441 - L2 LINE L2 -6 3266 3170 * 1030 294 114 9 chr3 77850715 77851365 -140185793 + L2 LINE L2 2600 3313 0 2477 102 148 8 chr3 77852073 77852466 -140184692 - LTR7 LTR ERV1 -2 448 1 304 356 7 7 chr3 77852524 77852659 -140184499 - MIR SINE MIR -116 146 12 1883 94 8 0 chr3 77852804 77853060 -140184098 + AluSx SINE Alu 1 258 -54 339 277 164 34 chr3 77853996 77854045 -140183113 - L2 LINE L2 -1 3312 3271 2178 64 0 0 chr3 77854045 77854372 -140182786 - AluY SINE Alu 0 343 17 339 277 164 34 chr3 77854372 77854498 -140182660 - L2 LINE L2 -42 3271 3113 1653 238 24 48 chr3 77854510 77855010 -140182148 + MLT1D LTR MaLR 1 488 -17 217 100 0 0 chr3 77855012 77855052 -140182106 + L2 LINE L2 3020 3059 -254 583 274 88 60 chr3 77855127 77855650 -140181508 + LTR48 LTR ERV1 1 787 0 204 288 85 52 chr3 77855653 77855806 -140181352 - L2 LINE L2 -236 3077 2920 637 258 77 6 chr3 77857393 77857575 -140179583 + MER117 DNA MER1_type 1 195 -2 312 352 32 0 chr3 77857806 77857931 -140179227 + MIR3 SINE MIR 78 206 -2 * 467 300 28 11 chr3 77857926 77858139 -140179019 - MIR SINE MIR -1 261 2 442 311 27 64 chr3 77859090 77859309 -140177849 + MIR SINE MIR 36 246 -16 222 291 139 0 chr3 77859331 77859417 -140177741 - L2 LINE L2 -24 3248 3151 699 325 38 0 chr3 77859531 77859768 -140177390 - MIR SINE MIR -9 253 8 1374 282 53 38 chr3 77860281 77860613 -140176545 - MLT1K LTR MaLR 0 588 243 2064 119 7 0 chr3 77860613 77860908 -140176250 + AluSx SINE Alu 1 297 -15 1374 282 53 38 chr3 77860908 77861125 -140176033 - MLT1K LTR MaLR -345 243 31 315 266 124 24 chr3 77861206 77861375 -140175783 + MIR SINE MIR 77 262 0 268 296 296 5 chr3 77862006 77862205 -140174953 - MIR SINE MIR -2 260 4 1103 190 15 0 chr3 77862619 77862819 -140174339 + MER58A DNA MER1_type 1 203 -21 303 277 185 31 chr3 77862836 77863031 -140174127 + MIR SINE MIR 9 233 -29 225 211 63 21 chr3 77863629 77863724 -140173434 + (TCTCTG)n Simple_repeat Simple_repeat 6 104 0 184 226 75 0 chr3 77864091 77864144 -140173014 - L2 LINE L2 -1 3271 3215 294 271 157 29 chr3 77864673 77864813 -140172345 - MIR SINE MIR -85 177 20 672 249 46 30 chr3 77864938 77865135 -140172023 - MLT1K LTR MaLR -227 361 162 357 303 30 42 chr3 77865177 77865342 -140171816 - L2 LINE L2 -184 3088 2926 265 349 46 0 chr3 77865429 77865538 -140171620 + MIR SINE MIR 76 189 -73 211 111 0 28 chr3 77866307 77866343 -140170815 + (TCTCTG)n Simple_repeat Simple_repeat 1 35 0 209 83 28 0 chr3 77866393 77866429 -140170729 + (TC)n Simple_repeat Simple_repeat 2 38 0 264 274 98 0 chr3 77866937 77867039 -140170119 - MIR SINE MIR -60 148 37 290 289 255 0 chr3 77867439 77867588 -140169570 + MIR SINE MIR 32 218 -44 182 36 0 36 chr3 77867714 77867742 -140169416 + (GGAA)n Simple_repeat Simple_repeat 4 30 0 415 240 14 0 chr3 77867760 77867906 -140169252 + (TGGA)n Simple_repeat Simple_repeat 2 149 0 215 99 23 47 chr3 77868626 77868682 -140168476 - MIR SINE MIR -59 149 95 648 292 47 34 chr3 77868707 77868943 -140168215 + MIR SINE MIR 13 251 -11 186 287 56 28 chr3 77869542 77869650 -140167508 - MIR SINE MIR -76 132 22 232 161 0 81 chr3 77869766 77869828 -140167330 + L1PBa LINE L1 397 453 -6410 290 205 13 0 chr3 77870393 77870471 -140166687 + GA-rich Low_complexity Low_complexity 2 80 0 578 285 147 21 chr3 77870494 77870827 -140166331 + L2 LINE L2 2938 3312 -1 688 233 8 2 chr3 77870834 77871443 -140165715 + (TGGA)n Simple_repeat Simple_repeat 1 613 0 206 349 101 9 chr3 77871581 77871690 -140165468 - MIR3 SINE MIR -76 132 14 486 138 108 0 chr3 77872493 77872623 -140164535 + Charlie4 DNA MER1_type 1741 1884 -77 411 188 12 24 chr3 77872668 77872753 -140164405 + Charlie4 DNA MER1_type 1878 1961 0 340 260 77 106 chr3 77872764 77872795 -140164363 - MLT1K LTR MaLR -4 584 554 2464 45 7 3 chr3 77872795 77873103 -140164055 + AluY SINE Alu 1 309 -2 340 260 77 106 chr3 77873103 77873279 -140163879 - MLT1K LTR MaLR -34 554 383 207 139 0 0 chr3 77873375 77873411 -140163747 + (TC)n Simple_repeat Simple_repeat 2 37 0 253 289 13 26 chr3 77873455 77873531 -140163627 - MLT1K LTR MaLR -388 200 126 256 296 56 80 chr3 77873893 77874055 -140163103 - MIR SINE MIR -70 192 35 379 353 7 0 chr3 77874075 77874214 -140162944 + (TG)n Simple_repeat Simple_repeat 2 141 0 422 176 0 11 chr3 77874228 77874319 -140162839 + (TG)n Simple_repeat Simple_repeat 1 90 0 823 236 47 17 chr3 77875161 77875394 -140161764 - MIR SINE MIR -10 252 13 626 243 88 11 chr3 77875683 77875864 -140161294 - MER117 DNA MER1_type -2 195 1 216 192 96 55 chr3 77876715 77876788 -140160370 + MER91A DNA MER1_type 98 173 -23 * 279 295 95 0 chr3 77876786 77876881 -140160277 + MER91A DNA MER1_type 93 196 0 184 300 57 14 chr3 77876960 77877030 -140160128 - L2 LINE L2 -30 3283 3211 303 214 155 39 chr3 77877504 77877607 -140159551 + L2 LINE L2 3158 3272 0 426 243 54 0 chr3 77877647 77877758 -140159400 - MIR SINE MIR -69 193 77 258 32 0 0 chr3 77878320 77878351 -140158807 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 311 256 179 46 chr3 77878434 77878629 -140158529 - MIR SINE MIR -4 258 38 1123 267 96 60 chr3 77878848 77879210 -140157948 - MLT1K LTR MaLR -37 551 163 2396 95 66 23 chr3 77879210 77879558 -140157600 - THE1B LTR MaLR -1 363 1 1123 267 96 60 chr3 77879558 77879727 -140157431 - MLT1K LTR MaLR -425 163 1 396 317 56 58 chr3 77880506 77880938 -140156220 - L2 LINE L2 0 3272 2842 437 200 206 61 chr3 77882006 77882134 -140155024 - MIR SINE MIR 0 262 103 1691 123 37 50 chr3 77882134 77882434 -140154724 + AluJb SINE Alu 1 296 -16 437 200 206 61 chr3 77882434 77882470 -140154688 - MIR SINE MIR -159 103 74 230 299 118 39 chr3 77883305 77883432 -140153726 - MIR SINE MIR -118 144 8 430 183 24 0 chr3 77883857 77883939 -140153219 - LTR16C LTR ERVL -2 489 406 516 296 63 35 chr3 77883945 77884301 -140152857 + MER115 DNA AcHobo 19 457 -236 453 292 35 0 chr3 77884392 77884505 -140152653 + MIR SINE MIR 75 191 -71 216 302 0 0 chr3 77884570 77884623 -140152535 + C-rich Low_complexity Low_complexity 3 55 0 821 234 5 38 chr3 77885090 77885274 -140151884 + MER45A DNA AcHobo 1 178 0 1013 202 134 85 chr3 77885418 77885626 -140151532 + MER113 DNA MER1_type? 7 203 -318 1961 113 4 0 chr3 77885626 77885922 -140151236 + AluSp SINE Alu 10 306 0 1013 202 134 85 chr3 77885922 77886157 -140151001 + MER113 DNA MER1_type? 203 474 -47 244 341 22 0 chr3 77886279 77886370 -140150788 + MER5B DNA MER1_type 1 93 -85 458 283 22 93 chr3 77886750 77887061 -140150097 + L1ME4a LINE L1 5631 5919 -202 1872 128 3 0 chr3 77888620 77888902 -140148256 - AluJb SINE Alu -25 287 5 588 235 112 6 chr3 77888939 77889109 -140148049 + MIR SINE MIR 63 250 -12 366 207 58 0 chr3 77889243 77889330 -140147828 + MIR SINE MIR 63 154 -108 2100 136 0 0 chr3 77890198 77890507 -140146651 - AluSx SINE Alu -3 309 1 497 150 0 0 chr3 77890507 77890587 -140146571 - L1M3 LINE L1 -383 5785 5706 456 73 0 0 chr3 77890587 77890642 -140146516 + LTR9 LTR ERV1 187 241 -371 1081 232 4 0 chr3 77890655 77890892 -140146266 - L1PA15-16 LINE L1 -4042 2807 2570 319 161 247 0 chr3 77890892 77890973 -140146185 + LTR64 LTR ERVK 427 527 -31 3560 208 59 32 chr3 77890983 77891945 -140145213 - L1M3f LINE L1 -4286 1042 15 1835 141 61 25 chr3 77892005 77892367 -140144791 - THE1C LTR MaLR 0 375 1 6957 130 9 14 chr3 77892367 77892682 -140144476 - THE1C-int LTR MaLR 0 1580 1265 2134 65 3 28 chr3 77892682 77893012 -140144146 - AluY SINE Alu 0 323 1 6957 130 9 14 chr3 77893012 77893730 -140143428 - THE1C-int LTR MaLR -315 1265 552 2217 116 0 0 chr3 77893730 77894040 -140143118 - AluSx SINE Alu -2 310 1 626 288 115 9 chr3 77894365 77894695 -140142463 - MLT1J2 LTR MaLR -22 428 64 552 267 80 5 chr3 77895059 77895246 -140141912 - MIR SINE MIR -1 261 61 2155 122 3 0 chr3 77895543 77895854 -140141304 - AluSx SINE Alu 0 312 1 337 204 194 20 chr3 77896118 77896216 -140140942 + MIR SINE MIR 136 250 -12 323 272 104 16 chr3 77896218 77896343 -140140815 - MIR SINE MIR -107 155 20 1378 223 40 47 chr3 77896607 77897098 -140140060 - MER34B LTR ERV1 -9 556 12 462 299 113 10 chr3 77897099 77897293 -140139865 - MIR SINE MIR -2 260 47 2147 95 7 3 chr3 77897318 77897622 -140139536 - AluSc SINE Alu -4 305 1 1926 123 62 0 chr3 77897929 77898221 -140138937 + AluSx SINE Alu 1 310 -2 1824 140 0 35 chr3 77898305 77898620 -140138538 + AluJo SINE Alu 6 309 -3 1825 158 17 92 chr3 77899119 77899440 -140137718 + MLT1A2 LTR MaLR 1 287 -87 2203 110 7 0 chr3 77899440 77899749 -140137409 + AluSx SINE Alu 1 311 -1 1825 158 17 92 chr3 77899749 77899831 -140137327 + MLT1A2 LTR MaLR 287 374 0 1712 138 46 0 chr3 77900039 77900321 -140136837 - AluSx SINE Alu -17 295 1 1921 125 3 0 chr3 77900440 77900728 -140136430 - AluJb SINE Alu -19 293 5 588 235 112 6 chr3 77900765 77900935 -140136223 + MIR SINE MIR 63 250 -12 366 207 58 0 chr3 77901069 77901156 -140136002 + MIR SINE MIR 63 154 -108 1505 248 25 36 chr3 77902051 77902494 -140134664 - LTR16C LTR ERVL -17 474 37 1825 106 95 0 chr3 77902834 77903107 -140134051 + AluSx SINE Alu 1 299 -13 438 280 4 0 chr3 77903879 77904152 -140133006 + (ATG)n Simple_repeat Simple_repeat 1 274 0 185 229 181 36 chr3 77904293 77904376 -140132782 - MIR SINE MIR -2 260 166 1323 228 46 41 chr3 77904385 77904779 -140132379 + LTR52 LTR ERVL 21 416 -5 479 309 68 12 chr3 77904783 77904945 -140132213 - MIR SINE MIR -89 173 3 2233 161 3 6 chr3 77905022 77905388 -140131770 + MLT1A1 LTR MaLR 1 365 0 352 205 12 24 chr3 77905539 77905622 -140131536 - MLT1L LTR MaLR -359 256 175 222 37 0 0 chr3 77906487 77906514 -140130644 + (TTCC)n Simple_repeat Simple_repeat 3 29 0 270 242 83 42 chr3 77906734 77906854 -140130304 + LTR67 LTR ERVL 429 553 -4 241 150 0 0 chr3 77907332 77907372 -140129786 + L2 LINE L2 3269 3308 -5 2432 197 46 48 chr3 77907526 77908069 -140129089 + MLT1F LTR MaLR 1 542 0 245 299 175 0 chr3 77908698 77908835 -140128323 - MER103 DNA DNA -3 163 3 198 0 0 0 chr3 77909039 77909061 -140128097 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 832 257 66 40 chr3 77909085 77909224 -140127934 - L1MD2 LINE L1 -15 6344 6210 1948 148 0 3 chr3 77909224 77909522 -140127636 + AluJb SINE Alu 1 297 -15 832 257 66 40 chr3 77909522 77909885 -140127273 - L1MD2 LINE L1 -149 6210 5802 6172 122 48 26 chr3 77909890 77910814 -140126344 + Tigger1 DNA MER2_type 1 951 -1467 4113 92 18 2 chr3 77910814 77911359 -140125799 - MER41A LTR ERV1 0 554 1 6172 122 48 26 chr3 77911359 77911463 -140125695 + Tigger1 DNA MER2_type 951 1051 -1367 596 82 71 20 chr3 77912015 77912113 -140125045 + MER4A LTR ERV1 1 103 -561 * 1858 131 11 27 chr3 77912110 77912461 -140124697 + MER4A LTR ERV1 261 664 0 2932 81 99 45 chr3 77912463 77912969 -140124189 + MER4A-int LTR ERV1 1 586 -6012 293 129 0 106 chr3 77913012 77913097 -140124061 + MER4A-int LTR ERV1 751 826 -5772 1088 267 47 14 chr3 77913147 77913443 -140123715 + MER4A-int LTR ERV1 1854 2159 -4172 4516 111 51 15 chr3 77913509 77914410 -140122748 + MER4B-int LTR ERV1 198 1149 -757 216 97 0 0 chr3 77914411 77914442 -140122716 + (TG)n Simple_repeat Simple_repeat 2 32 0 4377 69 79 6 chr3 77914460 77915142 -140122016 + MER4B-int LTR ERV1 1764 2495 -4103 1499 152 58 0 chr3 77915142 77915385 -140121773 - LTR8 LTR ERV1 -434 257 1 2692 101 84 28 chr3 77915385 77916157 -140121001 + MER4A-int LTR ERV1 2737 4138 -2460 1750 115 130 0 chr3 77916160 77916430 -140120728 - MER51B LTR ERV1 -72 305 1 1190 167 0 0 chr3 77916431 77916623 -140120535 + AluJo SINE Alu 110 301 -11 404 236 0 0 chr3 77917276 77917348 -140119810 - AluJ/FRAM SINE Alu -13 299 228 199 259 99 49 chr3 77917593 77917674 -140119484 + L2 LINE L2 3148 3232 -40 208 291 50 99 chr3 77918272 77918413 -140118745 - L3 LINE CR1 -9 1568 1435 201 264 75 0 chr3 77919470 77919523 -140117635 - MER5A DNA MER1_type -88 101 45 610 253 109 0 chr3 77919671 77919845 -140117313 + MIR SINE MIR 57 249 -13 499 191 30 89 chr3 77920179 77920347 -140116811 - MER104 DNA Tc2 -21 159 2 394 356 69 9 chr3 77920348 77920564 -140116594 - MIR SINE MIR -30 232 4 479 321 56 26 chr3 77920667 77920935 -140116223 - L2 LINE L2 -3 3269 2994 411 229 123 14 chr3 77920990 77921275 -140115883 + MLT1J2 LTR MaLR 67 409 0 210 312 106 28 chr3 77921278 77921419 -140115739 - L2 LINE L2 -299 2973 2822 415 252 105 35 chr3 77922236 77922379 -140114779 - MER63A DNA MER1_type -8 202 50 227 323 97 0 chr3 77922475 77922599 -140114559 + L2 LINE L2 2404 2539 -775 559 312 155 19 chr3 77922620 77922798 -140114360 + L2 LINE L2 2887 3039 -274 1971 94 4 4 chr3 77922798 77923074 -140114084 - AluSp SINE Alu -11 302 27 559 312 155 19 chr3 77923074 77923270 -140113888 + L2 LINE L2 3039 3312 -1 1603 208 57 130 chr3 77923938 77924639 -140112519 + MLT1E LTR MaLR 5 593 0 343 299 150 0 chr3 77924819 77924946 -140112212 - L2 LINE L2 -6 3266 3121 196 254 34 17 chr3 77924953 77925012 -140112146 - L2 LINE L2 0 3272 3213 4043 170 25 101 chr3 77925075 77925224 -140111934 - MER63C DNA MER1_type -130 930 771 1507 189 39 7 chr3 77925224 77925510 -140111648 + AluJo SINE Alu 1 295 -17 4043 170 25 101 chr3 77925510 77926367 -140110791 - MER63C DNA MER1_type -289 771 1 593 283 34 19 chr3 77926831 77927036 -140110122 - MIR SINE MIR -32 230 23 224 154 19 0 chr3 77927137 77927189 -140109969 + (ATG)n Simple_repeat Simple_repeat 2 54 0 229 326 70 0 chr3 77927283 77927369 -140109789 - L2 LINE L2 -1 3312 3221 186 328 16 0 chr3 77927449 77927513 -140109645 + L2 LINE L2 3244 3308 -5 239 276 0 0 chr3 77928664 77928722 -140108436 + GA-rich Low_complexity Low_complexity 1 58 0 305 283 84 30 chr3 77928725 77928891 -140108267 + L1ME4a LINE L1 5936 6110 -11 245 126 5 157 chr3 77928929 77929012 -140108146 + MLT1E1 LTR MaLR 65 197 -457 16027 132 14 108 chr3 77929014 77932428 -140104730 + L1P LINE L1 3 3095 -3051 14258 99 4 5 chr3 77932528 77934608 -140102550 + L1PA7 LINE L1 1411 3487 -2659 6757 65 23 2 chr3 77934606 77936293 -140100865 + L1PA7 LINE L1 4434 6152 -2 * 1020 187 46 84 chr3 77936293 77936364 -140100794 + MLT1D LTR MaLR 120 192 -401 789 186 8 0 chr3 77936364 77936493 -140100665 + FLAM_A SINE Alu 1 130 -3 1020 187 46 84 chr3 77936493 77936768 -140100390 + MLT1D LTR MaLR 192 511 -82 222 218 0 81 chr3 77937402 77937489 -140099669 + (CA)n Simple_repeat Simple_repeat 1 80 0 505 266 49 17 chr3 77937784 77937969 -140099189 + MIR SINE MIR 61 253 -9 396 0 0 0 chr3 77938028 77938072 -140099086 + (CA)n Simple_repeat Simple_repeat 2 45 0 242 233 12 70 chr3 77938138 77938224 -140098934 - MIR SINE MIR -46 216 136 2609 133 67 0 chr3 77938673 77939093 -140098065 + MER83 LTR ERV1 1 448 0 469 336 106 18 chr3 77939421 77939647 -140097511 - MIR SINE MIR -1 261 16 7213 74 20 48 chr3 77939986 77941942 -140095216 + SVA Other Other 20 1386 0 7928 201 17 43 chr3 77941942 77942769 -140094389 + L1PA15-16 LINE L1 2804 3651 -3198 2222 92 0 3 chr3 77942769 77943076 -140094082 - AluSq SINE Alu 0 306 1 7928 201 17 43 chr3 77943076 77943104 -140094054 + L1PA15-16 LINE L1 3651 3678 -3171 1598 172 11 11 chr3 77943104 77943383 -140093775 + AluJo SINE Alu 1 279 -33 7928 201 17 43 chr3 77943383 77944621 -140092537 + L1PA15-16 LINE L1 3678 4844 -2005 534 222 114 30 chr3 77945082 77945249 -140091909 + MIR SINE MIR 69 249 -13 210 280 0 0 chr3 77945331 77945381 -140091777 + GA-rich Low_complexity Low_complexity 2 51 0 287 297 139 0 chr3 78046140 78046241 -139990917 + L2 LINE L2 3195 3309 -4 310 238 181 9 chr3 78046582 78046687 -139990471 + MIR SINE MIR 125 247 -15 2141 112 3 3 chr3 78046930 78047242 -139989916 + AluSx SINE Alu 1 312 0 1689 165 11 0 chr3 78047279 78047558 -139989600 - AluJb SINE Alu -25 287 6 1393 126 0 18 chr3 78047807 78048029 -139989129 - AluJo SINE Alu -10 302 85 206 284 147 11 chr3 78048495 78048590 -139988568 - MIR SINE MIR -67 195 88 1089 188 34 29 chr3 78048735 78048872 -139988286 - LTR16A1 LTR ERVL -9 448 308 2998 146 16 6 chr3 78048872 78049364 -139987794 + LOR1a LTR ERV1 1 497 0 1089 188 34 29 chr3 78049364 78049465 -139987693 - LTR16A1 LTR ERVL -149 308 209 272 30 0 0 chr3 78049493 78049526 -139987632 + MER53 DNA DNA 1 33 -156 519 165 0 0 chr3 78049529 78049608 -139987550 + AluJ/FLAM SINE Alu 2 80 -232 2077 105 6 32 chr3 78049716 78049894 -139987264 - AluSp SINE Alu -8 305 124 197 0 0 67 chr3 78049894 78049924 -139987234 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2085 89 3 0 chr3 78049924 78050206 -139986952 - AluSp SINE Alu -30 283 1 2077 105 6 32 chr3 78050206 78050339 -139986819 - AluSp SINE Alu -187 126 1 22 0 0 0 chr3 78050380 78050402 -139986756 + AT_rich Low_complexity Low_complexity 1 22 0 588 134 0 2 chr3 78050480 78050618 -139986540 + MER53 DNA DNA 15 187 -2 232 206 73 0 chr3 78050688 78050756 -139986402 - LTR16A1 LTR ERVL -372 85 13 225 186 0 0 chr3 78050978 78051021 -139986137 - MER103 DNA DNA -113 53 11 21 0 0 0 chr3 78051558 78051579 -139985579 + AT_rich Low_complexity Low_complexity 1 21 0 742 271 113 17 chr3 78051710 78052012 -139985146 + MER46C DNA MER2_type 1 331 -7 2125 125 0 3 chr3 78052971 78053282 -139983876 - AluSx SINE Alu -2 310 1 278 248 296 0 chr3 78053821 78053946 -139983212 + MIR SINE MIR 73 234 -28 542 226 66 28 chr3 78054915 78055037 -139982121 - L1M4 LINE L1 -2982 3164 3029 848 173 0 0 chr3 78055037 78055170 -139981988 - FLAM_C SINE Alu 0 133 1 542 226 66 28 chr3 78055170 78055259 -139981899 - L1M4 LINE L1 -3117 3029 2945 1883 150 0 0 chr3 78055532 78055819 -139981339 - AluSq SINE Alu -26 287 1 24 0 0 0 chr3 78056252 78056276 -139980882 + AT_rich Low_complexity Low_complexity 1 24 0 261 323 52 0 chr3 78057352 78057448 -139979710 - L2 LINE L2 -35 3237 3137 2101 100 7 0 chr3 78057814 78058105 -139979053 - AluSq SINE Alu -20 293 1 1080 123 0 12 chr3 78058775 78058937 -139978221 - AluJb SINE Alu -15 297 138 914 127 8 0 chr3 78059181 78059315 -139977843 + AluJo SINE Alu 1 135 -177 5566 70 27 55 chr3 78059316 78060207 -139976951 + SVA Other Other 1 866 -520 6390 73 16 49 chr3 78060221 78061505 -139975653 + SVA Other Other 433 1386 0 1065 156 6 0 chr3 78061505 78061685 -139975473 + AluJo SINE Alu 121 301 -11 789 162 46 12 chr3 78061740 78061913 -139975245 + MER96B DNA MER1_type? 1 179 -238 549 270 0 0 chr3 78061987 78062102 -139975056 + L2 LINE L2 3151 3265 -7 329 250 98 45 chr3 78062344 78062456 -139974702 + MER91C DNA MER1_type 2 119 -21 313 353 138 18 chr3 78062821 78062988 -139974170 - MIR SINE MIR -56 206 20 388 176 42 0 chr3 78063385 78063433 -139973725 + L1MC4 LINE L1 7905 7950 -45 1785 160 0 22 chr3 78063433 78063745 -139973413 - AluJo SINE Alu -7 305 1 388 176 42 0 chr3 78063745 78063801 -139973357 + L1MC4 LINE L1 7950 7995 0 349 253 46 11 chr3 78063870 78063957 -139973201 - L1MC4 LINE L1 -1339 6703 6614 862 193 31 52 chr3 78064078 78064270 -139972888 + MER58A DNA MER1_type 37 224 0 1950 128 0 29 chr3 78064284 78064422 -139972736 + AluSx SINE Alu 1 141 -171 2358 90 0 0 chr3 78064422 78064732 -139972426 + AluY SINE Alu 2 311 0 1950 128 0 29 chr3 78064732 78064905 -139972253 + AluSx SINE Alu 141 303 -9 257 282 32 48 chr3 78064929 78065053 -139972105 + HAL1 LINE L1 2384 2505 -2 25 0 0 0 chr3 78065843 78065868 -139971290 + AT_rich Low_complexity Low_complexity 1 25 0 2091 99 10 3 chr3 78065989 78066283 -139970875 + AluSx SINE Alu 1 296 -16 290 276 48 14 chr3 78066887 78067032 -139970126 + (TCCA)n Simple_repeat Simple_repeat 3 152 0 270 95 0 0 chr3 78067054 78067096 -139970062 + (TCCA)n Simple_repeat Simple_repeat 2 43 0 204 244 39 0 chr3 78067125 78067203 -139969955 + (TCCA)n Simple_repeat Simple_repeat 2 82 0 301 290 260 5 chr3 78067207 78067407 -139969751 - L2 LINE L2 0 3272 3022 757 297 177 9 chr3 78067723 78067979 -139969179 + L2 LINE L2 2131 2343 -971 1807 148 10 22 chr3 78067979 78068290 -139968868 - AluJb SINE Alu -5 307 1 757 297 177 9 chr3 78068290 78068561 -139968597 + L2 LINE L2 2343 2820 -494 615 214 87 6 chr3 78068583 78068756 -139968402 + Charlie1 DNA MER1_type 56 242 -2519 887 132 0 21 chr3 78068762 78068906 -139968252 - FLAM_C SINE Alu -2 141 1 534 153 0 31 chr3 78068908 78069006 -139968152 + Charlie1 DNA MER1_type 2637 2731 -30 38866 81 16 6 chr3 78069013 78075096 -139962062 + L1PA6 LINE L1 11 6154 0 2214 95 3 0 chr3 78075113 78075409 -139961749 + AluSg SINE Alu 1 297 -13 236 306 153 0 chr3 78075455 78075579 -139961579 + L2 LINE L2 2809 2951 -321 386 235 140 29 chr3 78075671 78075807 -139961351 + L2 LINE L2 3119 3269 -3 234 286 143 11 chr3 78076292 78076383 -139960775 + MER5A DNA MER1_type 4 106 -83 3900 59 2 0 chr3 78076836 78077324 -139959834 - L1PA8 LINE L1 -1 6171 5683 725 156 74 0 chr3 78077339 78077461 -139959697 - FLAM_C SINE Alu -11 132 2 1217 175 19 30 chr3 78077659 78077927 -139959231 + L1MD3 LINE L1 7731 7995 0 309 257 200 0 chr3 78078412 78078517 -139958641 + MIR SINE MIR 23 148 -114 341 216 134 0 chr3 78078517 78078614 -139958544 + L1ME3 LINE L1 6049 6158 -4 224 176 20 20 chr3 78078619 78078638 -139958520 + GA-rich Low_complexity Low_complexity 2 20 -32 1491 129 33 117 chr3 78078638 78078972 -139958186 + AluSx SINE Alu 1 306 -6 224 176 20 20 chr3 78078972 78079003 -139958155 + GA-rich Low_complexity Low_complexity 19 52 0 332 203 203 49 chr3 78079195 78079318 -139957840 + MIR SINE MIR 119 260 -2 25 0 0 0 chr3 78079391 78079416 -139957742 + AT_rich Low_complexity Low_complexity 1 25 0 1150 149 58 34 chr3 78080064 78080272 -139956886 - AluJb SINE Alu -16 296 84 921 232 19 33 chr3 78080276 78080487 -139956671 - MER58A DNA MER1_type -16 208 1 447 208 0 0 chr3 78080509 78080629 -139956529 + (TCCA)n Simple_repeat Simple_repeat 1 120 0 388 279 39 54 chr3 78080630 78080759 -139956399 - L2 LINE L2 -7 3306 3180 263 290 11 21 chr3 78082303 78082396 -139954762 + GA-rich Low_complexity Low_complexity 5 96 0 1742 146 24 14 chr3 78082590 78082885 -139954273 - AluJb SINE Alu -14 298 1 1847 170 3 0 chr3 78082989 78083295 -139953863 - AluJb SINE Alu -1 311 5 1554 138 52 38 chr3 78084207 78084497 -139952661 - AluSx SINE Alu 0 312 19 1722 204 98 14 chr3 78084695 78085053 -139952105 + MSTD LTR MaLR 9 396 0 306 295 39 31 chr3 78085064 78085193 -139951965 + MIR SINE MIR 131 260 -2 455 277 63 52 chr3 78085201 78085459 -139951699 + L1ME4a LINE L1 5157 5418 -703 3286 65 34 2 chr3 78085464 78085908 -139951250 + L1MA1 LINE L1 5838 6295 -7 26 30 0 0 chr3 78085908 78085941 -139951217 + AT_rich Low_complexity Low_complexity 1 33 0 1197 189 39 9 chr3 78085982 78086215 -139950943 - AluJb SINE Alu -21 291 52 528 16 0 0 chr3 78086236 78086297 -139950861 + (TG)n Simple_repeat Simple_repeat 2 62 0 726 289 23 38 chr3 78086310 78086705 -139950453 + L1ME4a LINE L1 5545 5933 -188 36 0 0 0 chr3 78086824 78086860 -139950298 + AT_rich Low_complexity Low_complexity 1 36 0 2208 92 0 35 chr3 78087269 78087444 -139949714 - AluSq SINE Alu -8 305 144 2148 123 0 0 chr3 78087444 78087754 -139949404 - AluSg SINE Alu 0 310 1 2208 92 0 35 chr3 78087754 78087894 -139949264 - AluSq SINE Alu -169 144 1 3392 139 83 18 chr3 78088333 78088994 -139948164 - L1MB4 LINE L1 0 6180 5477 1025 167 128 0 chr3 78089034 78089238 -139947920 + AluJb SINE Alu 1 230 -82 572 170 11 0 chr3 78089239 78089333 -139947825 - AluJ/FLAM SINE Alu -217 95 1 342 234 0 51 chr3 78089333 78089470 -139947688 - L1M4 LINE L1 -1860 4286 4157 2346 169 19 19 chr3 78090543 78090986 -139946172 + L1MB7 LINE L1 5704 6110 -73 2113 107 0 7 chr3 78090986 78091284 -139945874 - AluSx SINE Alu -16 296 1 2346 169 19 19 chr3 78091284 78091357 -139945801 + L1MB7 LINE L1 6110 6182 -1 696 252 143 59 chr3 78092105 78092365 -139944793 - MER113 DNA MER1_type? -18 503 266 2201 86 3 0 chr3 78092365 78092655 -139944503 - AluSp SINE Alu -21 292 2 696 252 143 59 chr3 78092655 78092854 -139944304 - MER113 DNA MER1_type? -255 266 5 2064 123 7 10 chr3 78093019 78093329 -139943829 + AluSx SINE Alu 1 309 -3 1753 138 7 17 chr3 78093475 78093784 -139943374 + AluSx SINE Alu 1 306 0 888 261 55 66 chr3 78094256 78094563 -139942595 + L1MC4 LINE L1 7611 7913 -129 357 24 0 0 chr3 78094563 78094605 -139942553 + (TG)n Simple_repeat Simple_repeat 2 43 0 888 261 55 66 chr3 78094605 78094734 -139942424 + L1MC4 LINE L1 7913 8042 0 2168 109 20 0 chr3 78094740 78095043 -139942115 + AluSq SINE Alu 4 312 -1 839 191 25 0 chr3 78095062 78095219 -139941939 + FRAM SINE Alu 4 164 -12 720 186 0 0 chr3 78095664 78095782 -139941376 + FLAM_C SINE Alu 1 118 -15 189 0 0 0 chr3 78095797 78095818 -139941340 + (TG)n Simple_repeat Simple_repeat 2 22 0 233 191 0 0 chr3 78095818 78095865 -139941293 + LTR66 LTR ERVL 394 440 -170 34 0 0 0 chr3 78095871 78095905 -139941253 + AT_rich Low_complexity Low_complexity 1 34 0 974 236 37 0 chr3 78096188 78096404 -139940754 - MER58A DNA MER1_type 0 224 1 469 193 42 49 chr3 78096410 78096584 -139940574 - MIR SINE MIR -67 141 3 194 316 219 26 chr3 78096934 78097048 -139940110 + L2 LINE L2 3136 3271 -1 455 198 44 126 chr3 78097974 78098156 -139939002 - MER113 DNA MER1_type? -4 517 351 1687 139 73 0 chr3 78098168 78098455 -139938703 + AluJb SINE Alu 1 308 -4 208 328 15 0 chr3 78098786 78098853 -139938305 + L2 LINE L2 3246 3313 0 2036 116 13 3 chr3 78099342 78099644 -139937514 - AluSx SINE Alu -7 305 1 743 184 7 14 chr3 78099795 78099936 -139937222 - MER3 DNA MER1_type -22 187 48 21 0 0 0 chr3 78101368 78101389 -139935769 + AT_rich Low_complexity Low_complexity 1 21 0 1206 291 29 39 chr3 78101527 78101970 -139935188 + L1MC/D LINE L1 5194 5627 -924 2367 57 3 3 chr3 78101970 78102266 -139934892 - AluSp SINE Alu -17 296 1 1206 291 29 39 chr3 78102266 78102447 -139934711 + L1MC/D LINE L1 5627 5808 -743 257 103 77 0 chr3 78102718 78102757 -139934401 + L1MC4a LINE L1 6074 6115 -1693 1812 122 18 0 chr3 78102808 78103117 -139934041 + AluSx SINE Alu 1 314 0 1111 174 41 0 chr3 78103157 78103353 -139933805 - MER3 DNA MER1_type 0 209 6 1519 129 129 4 chr3 78103378 78103642 -139933516 + AluJo SINE Alu 1 297 -15 2065 102 10 0 chr3 78105000 78105294 -139931864 + AluSx SINE Alu 4 300 -12 189 121 0 0 chr3 78105298 78105331 -139931827 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 875 258 78 25 chr3 78105991 78106631 -139930527 - L2 LINE L2 0 3313 2636 1448 114 133 15 chr3 78106699 78106962 -139930196 + AluSg SINE Alu 1 294 -16 418 137 295 0 chr3 78107131 78107226 -139929932 - L1MB3 LINE L1 0 6183 6061 1379 161 87 31 chr3 78107539 78107825 -139929333 - AluJb SINE Alu -10 302 1 249 275 0 0 chr3 78107957 78108026 -139929132 + MIR SINE MIR 79 147 -61 250 354 23 15 chr3 78108072 78108202 -139928956 - L2 LINE L2 -195 3077 2947 378 325 53 13 chr3 78108555 78108706 -139928452 + MIR SINE MIR 81 237 -25 2120 99 0 7 chr3 78108867 78109160 -139927998 + AluSg SINE Alu 1 291 -19 1865 152 0 23 chr3 78109175 78109485 -139927673 + AluJb SINE Alu 1 303 -9 2167 83 3 0 chr3 78109908 78110197 -139926961 + AluSc SINE Alu 1 290 -19 25 0 0 0 chr3 78110223 78110248 -139926910 + AT_rich Low_complexity Low_complexity 1 25 0 1875 151 46 78 chr3 78110267 78110394 -139926764 - L1MA4 LINE L1 -189 6000 5870 1875 146 3 0 chr3 78110394 78110710 -139926448 - AluSx SINE Alu 0 318 2 1875 151 46 78 chr3 78110710 78110981 -139926177 - L1MA4 LINE L1 -319 5870 5592 337 167 19 0 chr3 78110981 78111035 -139926123 - Alu SINE Alu -246 56 2 1875 151 46 78 chr3 78111035 78111127 -139926031 - L1MA4 LINE L1 -597 5592 5606 1519 175 67 3 chr3 78111127 78111412 -139925746 - AluJb SINE Alu -9 303 1 1875 151 46 78 chr3 78111412 78111497 -139925661 - L1MA4 LINE L1 -582 5607 5521 1101 128 21 11 chr3 78111508 78111695 -139925463 - AluSg/x SINE Alu 0 312 124 262 167 152 0 chr3 78111828 78111894 -139925264 + MER5C DNA MER1_type 1 76 -248 2117 129 0 0 chr3 78111937 78112239 -139924919 + AluSx SINE Alu 1 302 -10 2075 75 21 0 chr3 78112240 78112522 -139924636 + AluY SINE Alu 1 288 -23 1351 192 33 0 chr3 78112947 78113218 -139923940 + AluJo SINE Alu 1 280 -32 1733 208 140 98 chr3 78113221 78113562 -139923596 + L1MD1 LINE L1 4268 4593 -1553 1744 146 7 14 chr3 78113562 78113849 -139923309 + AluJb SINE Alu 10 294 -18 1733 208 140 98 chr3 78113849 78114383 -139922775 + L1MD1 LINE L1 4593 5180 -966 4871 155 39 12 chr3 78114396 78115249 -139921909 + L1MD1 LINE L1 5305 6180 -62 2337 82 3 0 chr3 78115249 78115554 -139921604 - AluSx SINE Alu -6 306 1 1825 154 14 0 chr3 78115722 78116015 -139921143 - AluJb SINE Alu -15 297 1 267 127 0 0 chr3 78116018 78116060 -139921098 - Alu SINE Alu -267 35 1 1473 194 50 0 chr3 78116425 78116703 -139920455 - AluJo SINE Alu -20 292 1 2286 82 0 3 chr3 78117015 78117319 -139919839 - AluSc SINE Alu -6 303 1 995 170 85 10 chr3 78117787 78117987 -139919171 + MER20 DNA MER1_type 1 215 -4 1135 181 60 30 chr3 78118226 78118492 -139918666 + L1MA7 LINE L1 5953 6226 -65 333 246 14 0 chr3 78118492 78118561 -139918597 + Tigger3b DNA MER2_type 2 71 -1160 1895 118 0 61 chr3 78118576 78118906 -139918252 - AluSx SINE Alu -2 310 1 792 142 8 8 chr3 78118908 78119035 -139918123 + Tigger3b DNA MER2_type 57 183 -1048 * 1694 96 50 0 chr3 78119032 78119272 -139917886 + Tigger3b DNA MER2_type 289 540 -691 2230 84 0 7 chr3 78119272 78119571 -139917587 - AluSc SINE Alu -12 297 1 1621 117 114 0 chr3 78119571 78119844 -139917314 - AluSp SINE Alu -9 304 1 499 170 0 0 chr3 78120226 78120320 -139916838 + AluSg/x SINE Alu 219 312 0 4655 192 60 24 chr3 78120324 78120614 -139916544 + L1MD2 LINE L1 5281 5559 -800 2280 87 0 19 chr3 78120614 78120923 -139916235 - AluSc SINE Alu -6 303 1 4655 192 60 24 chr3 78120923 78121604 -139915554 + L1MD2 LINE L1 5559 6294 -65 2264 97 3 0 chr3 78121604 78121914 -139915244 - AluSp SINE Alu -2 311 1 4655 192 60 24 chr3 78121914 78121983 -139915175 + L1MD2 LINE L1 6294 6359 0 224 330 22 33 chr3 78122225 78122316 -139914842 - L2 LINE L2 -287 3026 2937 1561 166 0 55 chr3 78124314 78124622 -139912536 + AluSx SINE Alu 1 291 -21 2072 101 25 0 chr3 78124659 78124945 -139912213 + AluSx SINE Alu 4 296 -16 2243 159 99 10 chr3 78125750 78126225 -139910933 - L1MB8 LINE L1 0 6178 5658 180 0 0 0 chr3 78126225 78126245 -139910913 + (TA)n Simple_repeat Simple_repeat 2 21 0 2107 114 7 0 chr3 78126631 78126921 -139910237 + AluSg SINE Alu 1 292 -18 238 242 129 25 chr3 78127573 78127637 -139909521 - L1ME4a LINE L1 -50 6071 6015 1799 147 13 13 chr3 78127637 78127936 -139909222 - AluSx SINE Alu -13 299 1 238 242 129 25 chr3 78127936 78128063 -139909095 - L1ME4a LINE L1 -106 6015 5828 845 168 7 13 chr3 78128074 78128259 -139908899 - AluJb SINE Alu 0 312 129 442 226 0 20 chr3 78128338 78128440 -139908718 - L1ME4a LINE L1 -440 5681 5582 286 250 0 0 chr3 78128446 78128506 -139908652 + L2 LINE L2 3251 3310 -3 304 114 0 0 chr3 78128512 78128556 -139908602 - L1ME4a LINE L1 -547 5574 5531 1560 185 30 7 chr3 78129100 78129403 -139907755 - AluJb SINE Alu -2 310 1 2029 117 7 0 chr3 78129418 78129728 -139907430 - AluSx SINE Alu 0 312 1 539 278 123 0 chr3 78129733 78129895 -139907263 - MIR SINE MIR -18 244 63 26 30 0 0 chr3 78130807 78130840 -139906318 + GC_rich Low_complexity Low_complexity 1 33 0 39 74 0 0 chr3 78131042 78131123 -139906035 + GC_rich Low_complexity Low_complexity 1 81 0 462 18 0 0 chr3 78132878 78132933 -139904225 + (TG)n Simple_repeat Simple_repeat 1 55 0 277 108 0 0 chr3 78132933 78132970 -139904188 - AluJb SINE Alu -182 120 84 315 0 0 0 chr3 78132970 78133005 -139904153 + (TG)n Simple_repeat Simple_repeat 1 35 0 661 186 8 0 chr3 78133005 78133123 -139904035 - FLAM_C SINE Alu -23 120 2 21 0 0 0 chr3 78133138 78133159 -139903999 + AT_rich Low_complexity Low_complexity 1 21 0 456 235 13 89 chr3 78133634 78133819 -139903339 + MIR SINE MIR 23 191 -61 306 0 0 0 chr3 78133988 78134022 -139903136 + (TA)n Simple_repeat Simple_repeat 2 35 0 876 125 0 29 chr3 78134023 78134159 -139902999 - FLAM_C SINE Alu 0 133 2 1898 126 7 0 chr3 78134781 78135058 -139902100 - AluSx SINE Alu -32 280 2 522 212 124 0 chr3 78135305 78135418 -139901740 - L2 LINE L2 0 3313 3187 1735 161 24 0 chr3 78135428 78135719 -139901439 - AluJo SINE Alu -14 298 1 1855 112 4 0 chr3 78136009 78136268 -139900890 + AluSx SINE Alu 1 260 -52 2200 95 0 0 chr3 78136454 78136748 -139900410 + AluSx SINE Alu 1 294 -18 3417 211 76 18 chr3 78136760 78137817 -139899341 - L1M4 LINE L1 -2689 3457 2340 460 208 123 0 chr3 78139144 78139250 -139897908 - MER5B DNA MER1_type -7 171 53 1457 138 5 27 chr3 78139263 78139487 -139897671 - AluSg/x SINE Alu 0 310 92 644 252 68 32 chr3 78140360 78140610 -139896548 - MIR SINE MIR 0 262 4 507 258 94 90 chr3 78143578 78143630 -139893528 - MIR SINE MIR 0 262 212 2243 112 20 0 chr3 78143630 78143925 -139893233 - AluSx SINE Alu -11 301 1 507 258 94 90 chr3 78143925 78144116 -139893042 - MIR SINE MIR -50 212 18 385 255 59 0 chr3 78144331 78144433 -139892725 - MIR SINE MIR -107 155 48 264 319 107 56 chr3 78145554 78145964 -139891194 - MLT1L LTR MaLR -14 601 171 336 311 167 0 chr3 78149130 78149262 -139887896 - MIR SINE MIR -93 169 16 2145 107 3 7 chr3 78149456 78149754 -139887404 - AluSx SINE Alu -15 297 1 361 266 0 18 chr3 78149755 78149864 -139887294 - L1M4 LINE L1 -2295 3851 3745 2809 165 60 24 chr3 78149864 78150447 -139886711 + Tigger3b DNA MER2_type 2 605 -626 2016 144 10 0 chr3 78150447 78150746 -139886412 + AluSq SINE Alu 1 302 -11 273 242 23 125 chr3 78150746 78150874 -139886284 + MIR SINE MIR 119 233 -29 183 228 105 0 chr3 78150945 78151002 -139886156 + L3 LINE CR1 1227 1289 -288 588 111 0 11 chr3 78151767 78151857 -139885301 + AluJ/FRAM SINE Alu 221 309 -3 264 257 0 14 chr3 78152353 78152427 -139884731 - L2 LINE L2 -206 3066 2994 1552 144 79 25 chr3 78152505 78152783 -139884375 + AluJb SINE Alu 1 293 -19 3965 120 43 8 chr3 78152783 78153432 -139883726 - Tigger1 DNA MER2_type -109 2309 1638 414 292 9 9 chr3 78153677 78153790 -139883368 - MER81 DNA DNA 0 114 2 242 189 367 0 chr3 78153979 78154069 -139883089 + L2 LINE L2 3149 3271 -1 850 169 0 0 chr3 78154095 78154225 -139882933 + FLAM_C SINE Alu 1 130 -3 1930 135 10 0 chr3 78154294 78154582 -139882576 - AluSq SINE Alu -20 293 3 2465 63 0 10 chr3 78154590 78154892 -139882266 - AluY SINE Alu -12 299 1 23 33 0 0 chr3 78155996 78156026 -139881132 + GC_rich Low_complexity Low_complexity 1 30 0 244 48 48 0 chr3 78156230 78156272 -139880886 + (CCCCCG)n Simple_repeat Simple_repeat 3 46 0 188 233 47 0 chr3 78156369 78156412 -139880746 - L2 LINE L2 -18 3254 3210 202 313 98 9 chr3 78156529 78156641 -139880517 - MIR SINE MIR -81 181 60 1684 149 62 0 chr3 78156797 78157073 -139880085 - AluJo SINE Alu -19 293 1 1941 133 24 10 chr3 78157603 78157896 -139879262 + AluSx SINE Alu 1 297 -15 4968 64 0 3 chr3 78158213 78158836 -139878322 + L1PA6 LINE L1 5532 6152 -2 262 278 93 65 chr3 78158860 78158968 -139878190 + L2 LINE L2 3144 3254 -18 241 241 19 0 chr3 78159179 78159233 -139877925 - MIR SINE MIR -129 133 79 238 297 57 48 chr3 78159302 78159511 -139877647 + L2 LINE L2 2810 3020 -252 372 246 162 52 chr3 78159555 78159746 -139877412 + MIR SINE MIR 32 243 -19 697 167 104 3 chr3 78160360 78160519 -139876639 - MER20 DNA MER1_type -4 215 41 2480 67 3 0 chr3 78160530 78160828 -139876330 + AluSx SINE Alu 1 299 -13 1050 161 0 12 chr3 78160828 78160989 -139876169 + AluJo/FRAM SINE Alu 134 292 -20 822 168 0 30 chr3 78161182 78161313 -139875845 + FLAM_A SINE Alu 1 127 -6 1889 156 0 16 chr3 78161382 78161690 -139875468 - AluJb SINE Alu -4 308 6 22 0 0 0 chr3 78162021 78162043 -139875115 + AT_rich Low_complexity Low_complexity 1 22 0 207 350 165 0 chr3 78162175 78162272 -139874886 - MIR SINE MIR 0 262 150 485 322 22 0 chr3 78162470 78162653 -139874505 + MIR SINE MIR 76 262 0 23 33 0 0 chr3 78163820 78163850 -139873308 + GC_rich Low_complexity Low_complexity 1 30 0 298 0 48 0 chr3 78164055 78164097 -139873061 + (CCCCCG)n Simple_repeat Simple_repeat 3 46 0 188 233 47 0 chr3 78164194 78164237 -139872921 - L2 LINE L2 -18 3254 3210 239 310 88 9 chr3 78164354 78164467 -139872691 - MIR SINE MIR -81 181 60 272 238 16 0 chr3 78164754 78164817 -139872341 + L2 LINE L2 2985 3048 -224 210 214 48 0 chr3 78164872 78164914 -139872244 - L2 LINE L2 0 3272 3229 402 250 122 48 chr3 78166243 78166431 -139870727 - MIR SINE MIR -8 254 53 345 222 232 0 chr3 78166442 78166541 -139870617 - L2 LINE L2 0 3272 3151 211 370 161 5 chr3 78166791 78167002 -139870156 + L2 LINE L2 3017 3260 -12 * 455 241 99 21 chr3 78167001 78167142 -139870016 - MIR SINE MIR -5 257 106 1406 106 10 25 chr3 78167210 78167408 -139869750 - AluSg/x SINE Alu -26 286 92 1609 156 35 100 chr3 78167410 78167781 -139869377 - MSTB LTR MaLR -4 422 76 1099 124 30 25 chr3 78167776 78167977 -139869181 - MSTB1 LTR MaLR -230 202 1 * 251 286 10 61 chr3 78167977 78168079 -139869079 - MIR SINE MIR -113 95 2 2058 148 50 66 chr3 78168633 78168999 -139868159 + MSTB1 LTR MaLR 1 371 -61 1016 71 32 0 chr3 78168999 78169153 -139868005 + (TTTC)n Simple_repeat Simple_repeat 2 160 0 2153 118 0 0 chr3 78169155 78169435 -139867723 - AluSx SINE Alu -32 280 1 2058 148 50 66 chr3 78169435 78169504 -139867654 + MSTB1 LTR MaLR 372 432 0 309 374 134 31 chr3 78169796 78170312 -139866846 + L3 LINE CR1 1 569 -1008 488 122 12 0 chr3 78170342 78170424 -139866734 + (TTCC)n Simple_repeat Simple_repeat 2 84 0 643 170 0 0 chr3 78170425 78170531 -139866627 - FLAM_C SINE Alu -36 107 2 215 311 251 16 chr3 78170531 78170714 -139866444 + L3 LINE CR1 584 809 -768 2283 111 0 3 chr3 78170749 78171047 -139866111 + AluSc SINE Alu 1 297 -12 1054 209 55 11 chr3 78171436 78171709 -139865449 + L1ME3A LINE L1 5878 6162 -8 201 133 0 0 chr3 78171772 78171802 -139865356 + (GA)n Simple_repeat Simple_repeat 1 30 0 30 59 0 0 chr3 78171925 78171976 -139865182 + AT_rich Low_complexity Low_complexity 1 51 0 325 292 117 23 chr3 78171978 78172149 -139865009 + L1MEd LINE L1 1202 1388 -5142 661 273 46 21 chr3 78172194 78172476 -139864682 + L1MEd LINE L1 1362 1650 -4880 6656 53 4 15 chr3 78172484 78173392 -139863766 - L1PB1 LINE L1 0 6151 5254 423 0 0 0 chr3 78173413 78173460 -139863698 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1765 149 25 11 chr3 78173462 78173738 -139863420 - AluJb SINE Alu -32 280 1 321 298 39 77 chr3 78173773 78173954 -139863204 + HAL1 LINE L1 1390 1563 -944 739 167 12 54 chr3 78174021 78174189 -139862969 - FRAM SINE Alu -16 160 1 2059 118 52 3 chr3 78174511 78174799 -139862359 + AluSx SINE Alu 1 302 -10 398 321 66 32 chr3 78174815 78175095 -139862063 + L1MEd LINE L1 2385 2670 -3870 359 244 83 100 chr3 78175346 78175397 -139861761 + MIR SINE MIR 57 107 -155 2198 126 3 0 chr3 78175397 78175698 -139861460 + AluSq SINE Alu 1 302 -11 359 244 83 100 chr3 78175698 78175826 -139861332 + MIR SINE MIR 107 233 -29 185 228 105 0 chr3 78175898 78175955 -139861203 + L3 LINE CR1 1227 1289 -288 383 218 100 0 chr3 78176762 78176872 -139860286 - MIR SINE MIR -75 187 67 2029 152 0 10 chr3 78177063 78177372 -139859786 + AluSx SINE Alu 1 306 -6 379 293 44 20 chr3 78177560 78177727 -139859431 + MIR SINE MIR 17 186 -62 448 298 0 9 chr3 78177812 78177926 -139859232 - MER81 DNA DNA 0 114 2 236 198 352 0 chr3 78178115 78178206 -139858952 + L2 LINE L2 3149 3271 -1 850 169 0 0 chr3 78178232 78178362 -139858796 + FLAM_C SINE Alu 1 130 -3 2336 105 0 0 chr3 78178429 78178724 -139858434 - AluSq SINE Alu -18 295 1 2211 159 9 48 chr3 78178866 78179305 -139857853 - LTR3 LTR ERVK -10 422 1 559 232 60 38 chr3 78179702 78179887 -139857271 + MIR SINE MIR 19 207 -55 15164 121 39 15 chr3 78179934 78180034 -139857124 - Tigger1 DNA MER2_type 0 2418 2322 1732 159 58 0 chr3 78180034 78180311 -139856847 + AluJo SINE Alu 1 293 -19 15164 121 39 15 chr3 78180311 78181435 -139855723 - Tigger1 DNA MER2_type -96 2322 1227 2281 118 0 16 chr3 78181435 78181748 -139855410 + AluSx SINE Alu 1 308 -4 15164 121 39 15 chr3 78181748 78182883 -139854275 - Tigger1 DNA MER2_type -1191 1227 1 202 205 0 0 chr3 78182968 78183007 -139854151 + MIR SINE MIR 224 262 0 2294 127 0 0 chr3 78183022 78183322 -139853836 + AluSx SINE Alu 1 300 -12 1667 97 0 0 chr3 78183359 78183565 -139853593 + AluSg/x SINE Alu 86 291 -21 545 237 22 0 chr3 78183567 78183706 -139853452 + L1MC4 LINE L1 7901 8042 0 867 143 24 6 chr3 78184356 78184524 -139852634 + MER96B DNA MER1_type? 241 411 -6 1687 160 36 52 chr3 78184645 78184951 -139852207 - AluJo SINE Alu -11 301 1 270 226 48 0 chr3 78184995 78185057 -139852101 + MIR SINE MIR 96 160 -102 493 248 64 38 chr3 78185108 78185265 -139851893 - MIR SINE MIR -35 227 67 1010 162 39 0 chr3 78185315 78185494 -139851664 + MER20 DNA MER1_type 31 216 -3 1802 154 7 23 chr3 78186088 78186393 -139850765 + AluJb SINE Alu 11 310 -2 483 253 201 66 chr3 78186429 78186918 -139850240 - L2 LINE L2 -7 3306 2725 453 211 9 9 chr3 78187620 78187729 -139849429 + MER103 DNA DNA 14 122 -44 432 274 167 14 chr3 78188260 78188475 -139848683 + MIR SINE MIR 13 260 -2 304 197 15 0 chr3 78188777 78188843 -139848315 + L1MA3 LINE L1 6239 6305 0 235 189 19 0 chr3 78188982 78189035 -139848123 - MER53 DNA DNA -135 54 1 2253 104 0 0 chr3 78189531 78189838 -139847320 - AluSx SINE Alu -5 307 1 21 0 0 0 chr3 78190173 78190194 -139846964 + AT_rich Low_complexity Low_complexity 1 21 0 492 320 23 17 chr3 78191302 78191477 -139845681 + MIR SINE MIR 86 261 -1 270 213 354 0 chr3 78191490 78191617 -139845541 - MIR SINE MIR -13 249 78 310 311 147 28 chr3 78191655 78191832 -139845326 - HAL1 LINE L1 -1205 1302 1105 310 316 26 0 chr3 78191832 78191949 -139845209 + CT-rich Low_complexity Low_complexity 6 125 0 209 250 146 10 chr3 78192116 78192212 -139844946 + MIR SINE MIR 35 143 -65 1093 58 7 0 chr3 78192858 78192995 -139844163 - AluSq/x SINE Alu -175 138 1 597 263 13 19 chr3 78193024 78193180 -139843978 + MIR SINE MIR 28 182 -80 21 36 0 0 chr3 78193209 78193237 -139843921 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr3 78193282 78193316 -139843842 + AT_rich Low_complexity Low_complexity 1 34 0 511 265 68 76 chr3 78193349 78193598 -139843560 + MIR SINE MIR 16 262 0 322 267 156 11 chr3 78194033 78194123 -139843035 + L1ME4a LINE L1 5724 5826 -295 1004 158 0 0 chr3 78194127 78194285 -139842873 + AluJb SINE Alu 137 294 -18 304 275 62 56 chr3 78194325 78194503 -139842655 + L1ME4a LINE L1 5846 6024 -97 1732 149 0 4 chr3 78194595 78194864 -139842294 - AluSx SINE Alu -44 268 1 795 196 133 0 chr3 78194865 78195023 -139842135 - LTR47A LTR ERVL -88 364 186 231 256 112 80 chr3 78195057 78195182 -139841976 - MIR SINE MIR -69 139 11 2275 87 0 3 chr3 78197512 78197811 -139839347 + AluSx SINE Alu 1 298 -14 427 239 112 15 chr3 78197975 78198109 -139839049 - MIR SINE MIR -70 192 46 1634 188 3 10 chr3 78198129 78198437 -139838721 - AluJo SINE Alu -6 306 1 275 233 0 17 chr3 78198483 78198543 -139838615 - L2 LINE L2 -14 3299 3241 * 340 319 84 11 chr3 78198542 78198733 -139838425 - L2 LINE L2 -276 3037 2833 417 144 0 56 chr3 78199218 78199308 -139837850 + AluSp/q SINE Alu 228 312 -1 4400 68 50 23 chr3 78199462 78200078 -139837080 - LTR10E LTR ERV1 0 633 1 582 226 13 57 chr3 78200668 78200827 -139836331 - MIR SINE MIR 0 262 111 1686 207 157 33 chr3 78200828 78201312 -139835846 - MLT1K LTR MaLR -6 582 39 218 345 24 12 chr3 78201638 78201722 -139835436 - L2 LINE L2 0 3313 3229 2158 99 7 0 chr3 78201758 78202060 -139835098 - AluSq SINE Alu -9 304 1 1920 145 26 0 chr3 78202417 78202721 -139834437 + AluSx SINE Alu 1 312 0 266 210 0 65 chr3 78203784 78203846 -139833312 + L2 LINE L2 3215 3272 0 599 259 49 21 chr3 78204122 78204265 -139832893 + MIR SINE MIR 86 232 -30 2062 101 0 14 chr3 78204598 78204909 -139832249 + AluSq SINE Alu 1 307 0 216 329 25 0 chr3 78205069 78205148 -139832010 - L2 LINE L2 -7 3265 3185 29 0 0 0 chr3 78205400 78205429 -139831729 + AT_rich Low_complexity Low_complexity 1 29 0 326 276 19 19 chr3 78206050 78206155 -139831003 - L2 LINE L2 0 3272 3168 190 239 179 0 chr3 78206635 78206702 -139830456 - MIR SINE MIR -1 261 183 903 198 6 16 chr3 78206704 78206886 -139830272 - AluJ SINE Alu -1 311 132 2072 89 0 7 chr3 78206919 78207200 -139829958 - AluSx SINE Alu -33 279 1 491 119 0 0 chr3 78207206 78207273 -139829885 - AluJ SINE Alu -186 126 60 2260 175 124 23 chr3 78207327 78207858 -139829300 - L1ME1 LINE L1 -18 6148 5564 218 263 0 18 chr3 78207889 78207946 -139829212 - MIR SINE MIR -104 158 103 1731 147 24 7 chr3 78207974 78208267 -139828891 - AluSx SINE Alu -14 298 1 547 149 228 0 chr3 78208402 78208516 -139828642 - MER105 DNA DNA -21 183 44 * 1724 103 24 69 chr3 78208514 78208692 -139828466 - MER33 DNA MER1_type -2261 324 163 1513 170 11 14 chr3 78208692 78208969 -139828189 + AluJo SINE Alu 6 281 -31 1724 103 24 69 chr3 78208969 78209126 -139828032 - MER33 DNA MER1_type -2422 163 1 1090 166 0 0 chr3 78209126 78209313 -139827845 + AluJo SINE Alu 117 303 -9 303 277 46 54 chr3 78209325 78209416 -139827742 + L1ME4a LINE L1 5843 5934 -187 2293 84 0 0 chr3 78209416 78209714 -139827444 - AluSx SINE Alu -14 298 1 303 277 46 54 chr3 78209714 78209752 -139827406 + L1ME4a LINE L1 5934 5971 -150 474 211 0 0 chr3 78209796 78209891 -139827267 - Charlie5 DNA MER1_type -2511 101 7 325 276 148 46 chr3 78210594 78210811 -139826347 + MIR SINE MIR 9 247 -15 1675 134 16 67 chr3 78211267 78211454 -139825704 - AluJb SINE Alu -14 298 132 351 0 0 0 chr3 78211454 78211493 -139825665 + (TG)n Simple_repeat Simple_repeat 2 40 0 1675 134 16 67 chr3 78211493 78211619 -139825539 - AluJb SINE Alu -180 132 1 301 333 195 6 chr3 78212001 78212175 -139824983 - MIR SINE MIR -35 227 21 2431 51 0 3 chr3 78213061 78213355 -139823803 - AluY SINE Alu -18 293 1 2035 93 7 20 chr3 78214507 78214807 -139822351 - AluSg SINE Alu -14 296 1 268 119 24 0 chr3 78214830 78214872 -139822286 + MER5B DNA MER1_type 1 43 -135 2087 90 24 3 chr3 78215340 78215628 -139821530 - AluSx SINE Alu -18 294 1 280 285 140 65 chr3 78215629 78215815 -139821343 + MIR SINE MIR 50 249 -13 2175 143 7 61 chr3 78216517 78216929 -139820229 - MLT1B LTR MaLR 0 390 1 2053 138 0 0 chr3 78217263 78217575 -139819583 + AluJb SINE Alu 1 312 0 518 325 50 17 chr3 78217676 78217916 -139819242 + MIR SINE MIR 2 249 -13 502 296 52 22 chr3 78217921 78218151 -139819007 - L1ME LINE L1 -310 5811 5575 2495 41 0 29 chr3 78218438 78218753 -139818405 - AluY SINE Alu -5 306 1 183 309 15 0 chr3 78218921 78218989 -139818169 + MIR SINE MIR 81 149 -59 2026 98 0 57 chr3 78219213 78219530 -139817628 - AluSx SINE Alu -13 299 1 955 153 13 13 chr3 78219555 78219750 -139817408 + FAM SINE Alu 1 59 0 1991 93 7 33 chr3 78220089 78220390 -139816768 + AluSc SINE Alu 1 293 -16 399 276 196 25 chr3 78220802 78220965 -139816193 - MIR SINE MIR -62 200 10 2912 127 117 26 chr3 78220980 78221318 -139815840 - LTR49 LTR ERV1 0 595 187 2048 118 0 3 chr3 78221318 78221614 -139815544 - AluSq SINE Alu -17 296 2 2912 127 117 26 chr3 78221614 78221820 -139815338 - LTR49 LTR ERV1 -408 187 1 1562 168 48 3 chr3 78222173 78222464 -139814694 - AluJo SINE Alu -8 304 1 677 139 9 9 chr3 78222483 78222591 -139814567 - AluJo SINE Alu -177 135 28 195 184 0 0 chr3 78224125 78224163 -139812995 + (TA)n Simple_repeat Simple_repeat 2 39 0 21 36 0 0 chr3 78224163 78224191 -139812967 + AT_rich Low_complexity Low_complexity 1 28 0 1881 142 3 10 chr3 78224339 78224648 -139812510 - AluJo SINE Alu -5 307 1 1375 172 19 58 chr3 78225092 78225290 -139811868 - AluJo SINE Alu 0 312 130 2375 61 0 0 chr3 78225290 78225583 -139811575 + AluY SINE Alu 1 293 -18 1375 172 19 58 chr3 78225583 78225709 -139811449 - AluJo SINE Alu -181 131 1 288 189 0 0 chr3 78225727 78225780 -139811378 - L2 LINE L2 0 3313 3261 456 333 132 0 chr3 78225873 78226062 -139811096 - MIR SINE MIR -34 228 15 207 315 0 22 chr3 78226132 78226224 -139810934 + CT-rich Low_complexity Low_complexity 4 93 0 1200 133 5 19 chr3 78226227 78226437 -139810721 - AluSg/x SINE Alu 0 312 106 2209 60 10 10 chr3 78226609 78226907 -139810251 + AluY SINE Alu 1 298 -13 2141 106 3 0 chr3 78226915 78227218 -139809940 + AluSx SINE Alu 3 306 -6 1320 276 70 4 chr3 78227391 78227877 -139809281 + MER113 DNA MER1_type? 4 521 0 1356 152 0 9 chr3 78228240 78228457 -139808701 + AluJb SINE Alu 87 301 -11 247 274 0 0 chr3 78228614 78228676 -139808482 + MIR SINE MIR 86 147 -61 236 254 75 0 chr3 78230129 78230196 -139806962 - L1MC/D LINE L1 -1884 5924 5853 310 119 0 0 chr3 78230471 78230513 -139806645 + Alu SINE Alu 1 42 -260 1471 102 14 5 chr3 78230513 78230729 -139806429 + AluSg/x SINE Alu 81 298 -14 1959 154 0 0 chr3 78231223 78231528 -139805630 + AluJb SINE Alu 1 305 -7 359 306 125 19 chr3 78231545 78231705 -139805453 - MER5A DNA MER1_type -11 178 2 687 242 180 14 chr3 78231731 78231942 -139805216 + MIR SINE MIR 4 249 -13 191 175 25 0 chr3 78233030 78233070 -139804088 - L2 LINE L2 -18 3254 3214 26 0 0 0 chr3 78233665 78233691 -139803467 + AT_rich Low_complexity Low_complexity 1 26 0 190 246 43 58 chr3 78234122 78234191 -139802967 - L2 LINE L2 -14 3258 3191 514 278 118 24 chr3 78235853 78236065 -139801093 + MIR SINE MIR 23 254 -8 606 258 26 32 chr3 78236211 78236401 -139800757 + MER3 DNA MER1_type 21 209 0 279 221 378 39 chr3 78236419 78236546 -139800612 + MER5A DNA MER1_type 12 181 -8 673 266 95 45 chr3 78236835 78237079 -139800079 - MIR SINE MIR 0 262 14 308 225 155 56 chr3 78239091 78239233 -139797925 + MIR SINE MIR 64 219 -43 * 821 254 72 8 chr3 78239213 78239449 -139797709 - MIR SINE MIR -4 258 8 312 306 111 28 chr3 78240839 78241019 -139796139 + L1MEd LINE L1 783 977 -5142 619 263 64 36 chr3 78241064 78241345 -139795813 + L1MEd LINE L1 951 1239 -4880 4686 50 8 24 chr3 78241353 78241978 -139795180 - L1PB1 LINE L1 0 6151 5537 442 272 104 12 chr3 78243433 78243606 -139793552 - MIR SINE MIR -27 235 47 914 164 147 21 chr3 78243607 78243845 -139793313 - ORSL DNA AcHobo -7 268 1 193 232 71 36 chr3 78243848 78243904 -139793254 - MIR3 SINE MIR -140 68 11 * 294 195 345 0 chr3 78243902 78243989 -139793169 - MIR3 SINE MIR -49 159 43 396 0 0 0 chr3 78244230 78244274 -139792884 + (CA)n Simple_repeat Simple_repeat 2 45 0 458 135 63 27 chr3 78244340 78244451 -139792707 - Charlie5 DNA MER1_type -34 2578 2464 334 243 19 68 chr3 78244934 78245037 -139792121 + MIR SINE MIR 18 115 -147 270 258 54 11 chr3 78246525 78246572 -139790586 - L1M4 LINE L1 -1934 4212 4168 1955 165 0 10 chr3 78246572 78246875 -139790283 - AluSx SINE Alu -12 300 1 270 258 54 11 chr3 78246875 78246920 -139790238 - L1M4 LINE L1 -1978 4168 4116 415 196 107 36 chr3 78247251 78247363 -139789795 + MER103 DNA DNA 2 121 -45 1999 116 21 3 chr3 78248615 78248900 -139788258 + AluSq SINE Alu 14 303 -10 1312 210 181 29 chr3 78248905 78249291 -139787867 - MLT1F LTR MaLR -60 482 38 2414 94 0 0 chr3 78249423 78249731 -139787427 + AluY SINE Alu 1 308 -3 1092 95 13 25 chr3 78249933 78250091 -139787067 + AluSg/x SINE Alu 154 309 -1 297 276 111 89 chr3 78250370 78250595 -139786563 - MIR SINE MIR -1 261 32 1714 140 107 0 chr3 78251410 78251681 -139785477 + AluSx SINE Alu 1 300 -12 2130 118 14 0 chr3 78251681 78251978 -139785180 + AluSg SINE Alu 1 301 -9 408 258 31 23 chr3 78252090 78252218 -139784940 + MIR SINE MIR 114 242 -20 309 315 144 9 chr3 78252561 78252672 -139784486 - L2 LINE L2 -5 3267 3142 1910 154 13 7 chr3 78252720 78253026 -139784132 + AluJo SINE Alu 1 308 -4 318 305 32 0 chr3 78253830 78253925 -139783233 - MIR SINE MIR -6 256 159 1932 124 8 0 chr3 78253929 78254194 -139782964 - AluSx SINE Alu -12 300 34 184 154 0 39 chr3 78254415 78254441 -139782717 + A-rich Low_complexity Low_complexity 5 30 -24 1917 169 0 10 chr3 78254441 78254755 -139782403 + AluJb SINE Alu 1 311 -1 184 154 0 39 chr3 78254755 78254780 -139782378 + A-rich Low_complexity Low_complexity 30 54 0 2424 95 0 0 chr3 78254863 78255169 -139781989 + AluSc SINE Alu 1 306 -3 476 129 75 161 chr3 78255968 78256154 -139781004 + MER53 DNA DNA 17 186 -3 655 276 42 48 chr3 78256459 78256770 -139780388 + L1MC4 LINE L1 7229 7537 -505 356 241 13 0 chr3 78256776 78256855 -139780303 + MER5A DNA MER1_type 27 106 -83 387 276 29 0 chr3 78257312 78257417 -139779741 - MIR SINE MIR -44 218 111 1965 120 16 36 chr3 78257494 78257803 -139779355 + AluSg SINE Alu 1 303 -7 1669 147 3 91 chr3 78258215 78258391 -139778767 - AluJo SINE Alu -20 292 155 2040 137 3 13 chr3 78258391 78258691 -139778467 + AluSq SINE Alu 1 297 -16 1669 147 3 91 chr3 78258691 78258834 -139778324 - AluJo SINE Alu -157 155 1 21 0 0 0 chr3 78258904 78258925 -139778233 + AT_rich Low_complexity Low_complexity 1 21 0 1296 204 83 47 chr3 78259205 78259627 -139777531 - MER113 DNA MER1_type? -82 439 3 215 268 216 21 chr3 78259629 78259726 -139777432 - MIR3 SINE MIR -48 160 45 1061 121 0 0 chr3 78259727 78259867 -139777291 + AluSq/x SINE Alu 1 140 -173 1616 148 42 11 chr3 78259868 78260152 -139777006 + AluSg SINE Alu 1 293 -17 1029 206 35 57 chr3 78261372 78261688 -139775470 + Tigger3b DNA MER2_type 297 605 -626 1918 138 0 33 chr3 78261688 78261993 -139775165 + AluSq SINE Alu 1 295 -18 1712 176 25 57 chr3 78262003 78262223 -139774935 - L1MDa LINE L1 -5128 1412 1187 2164 104 0 29 chr3 78262223 78262530 -139774628 - AluSq SINE Alu -15 298 1 1712 176 25 57 chr3 78262530 78262781 -139774377 - L1MDa LINE L1 -5353 1187 956 711 220 13 25 chr3 78262901 78263060 -139774098 + MLT1E LTR MaLR 393 549 -44 437 184 184 0 chr3 78263082 78263180 -139773978 - MER45 DNA AcHobo -61 117 2 339 25 0 0 chr3 78263475 78263515 -139773643 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 180 97 0 0 chr3 78264545 78264576 -139772582 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2267 127 0 0 chr3 78265086 78265393 -139771765 + AluSx SINE Alu 1 307 -5 1750 153 3 24 chr3 78265421 78265715 -139771443 + AluJo SINE Alu 11 298 -14 230 54 0 27 chr3 78265715 78265735 -139771423 + (GA)n Simple_repeat Simple_repeat 1 21 -15 2081 93 30 0 chr3 78265735 78266004 -139771154 + AluSg SINE Alu 21 297 -13 230 54 0 27 chr3 78266004 78266020 -139771138 + (GA)n Simple_repeat Simple_repeat 21 36 0 359 289 7 66 chr3 78266217 78266322 -139770836 + MIR SINE MIR 110 205 -57 2277 96 17 0 chr3 78266322 78266624 -139770534 + AluSx SINE Alu 1 307 -5 359 289 7 66 chr3 78266624 78266670 -139770488 + MIR SINE MIR 205 252 -10 2259 119 0 3 chr3 78267125 78267436 -139769722 + AluSx SINE Alu 1 310 -2 1317 167 37 0 chr3 78267511 78267726 -139769432 - AluJb SINE Alu -14 298 76 2188 73 76 3 chr3 78268791 78269080 -139768078 + AluY SINE Alu 1 310 -1 332 257 0 59 chr3 78269422 78269523 -139767635 + MER117 DNA MER1_type 68 162 -35 2245 120 3 16 chr3 78270147 78270463 -139766695 + AluSq SINE Alu 1 312 -1 474 268 63 7 chr3 78271066 78271208 -139765950 - MIR SINE MIR -32 230 81 306 217 29 14 chr3 78271292 78271361 -139765797 - MIR SINE MIR -81 181 112 1685 159 48 38 chr3 78271609 78271774 -139765384 - AluJb SINE Alu -20 292 121 236 53 26 0 chr3 78271774 78271812 -139765346 + (TG)n Simple_repeat Simple_repeat 1 39 0 1685 159 48 38 chr3 78271812 78271935 -139765223 - AluJb SINE Alu -191 121 1 198 143 114 0 chr3 78272257 78272292 -139764866 - L2 LINE L2 -8 3305 3267 219 403 25 25 chr3 78272341 78272460 -139764698 + L2 LINE L2 3129 3247 -25 2466 73 0 7 chr3 78272485 78272786 -139764372 + AluSc SINE Alu 1 299 -10 549 232 65 26 chr3 78273136 78273291 -139763867 - MIR SINE MIR -24 238 78 2282 100 13 0 chr3 78273291 78273590 -139763568 + AluSq SINE Alu 1 303 -10 1007 182 0 0 chr3 78273590 78273760 -139763398 + AluSg/x SINE Alu 132 301 -9 2315 77 3 27 chr3 78274396 78274722 -139762436 - AluY SINE Alu 0 319 1 1058 92 0 0 chr3 78274729 78274860 -139762298 - AluSc SINE Alu -178 131 1 2128 131 0 0 chr3 78275382 78275798 -139761360 - AluJb SINE Alu 0 416 1 1009 291 75 6 chr3 78275808 78276166 -139760992 + LTR16C LTR ERVL 109 491 0 624 228 21 28 chr3 78276177 78276322 -139760836 - MIR SINE MIR -8 254 111 252 200 110 80 chr3 78276430 78276530 -139760628 - MIR SINE MIR -139 123 21 1857 187 25 118 chr3 78276535 78276994 -139760164 + MLT1D LTR MaLR 1 501 -4 1616 169 32 3 chr3 78276994 78277278 -139759880 - AluJb SINE Alu -10 302 11 1857 187 25 118 chr3 78277278 78277302 -139759856 + MLT1D LTR MaLR 501 429 -76 2120 120 30 10 chr3 78277302 78277601 -139759557 - AluSx SINE Alu -7 305 1 1857 187 25 118 chr3 78277601 78277673 -139759485 + MLT1D LTR MaLR 428 505 0 406 249 232 38 chr3 78277791 78277976 -139759182 + MIR SINE MIR 39 259 -3 1130 233 33 21 chr3 78278115 78278450 -139758708 + MLT1K LTR MaLR 248 586 -2 353 246 69 15 chr3 78278815 78278976 -139758182 - MIR SINE MIR -63 145 6 2308 61 18 0 chr3 78279038 78279344 -139757814 - AluSx SINE Alu 0 311 1 462 306 33 13 chr3 78279388 78279588 -139757570 + MIR SINE MIR 18 220 -42 1003 115 0 0 chr3 78279595 78279734 -139757424 - AluSg/x SINE Alu -4 306 168 2129 132 0 10 chr3 78279935 78280238 -139756920 - AluSq SINE Alu -11 302 3 352 182 20 10 chr3 78280454 78280553 -139756605 + L1ME LINE L1 798 897 -5173 228 229 131 82 chr3 78280555 78280677 -139756481 + MIR SINE MIR 13 140 -122 1415 113 0 0 chr3 78280756 78280942 -139756216 + AluSq SINE Alu 117 302 -11 2032 102 0 0 chr3 78280945 78281200 -139755958 + AluSg SINE Alu 1 255 -55 22 0 0 0 chr3 78281200 78281222 -139755936 + AT_rich Low_complexity Low_complexity 1 22 0 1669 140 17 10 chr3 78281222 78281514 -139755644 - L1MB7 LINE L1 -262 5922 5629 806 107 0 0 chr3 78281519 78281622 -139755536 - AluSg/x SINE Alu -11 299 197 299 227 196 0 chr3 78281627 78281724 -139755434 + MIR SINE MIR 99 214 -48 2293 95 0 7 chr3 78281762 78282058 -139755100 + AluSp SINE Alu 1 294 -19 319 353 68 0 chr3 78282078 78282211 -139754947 + L2 LINE L2 3123 3264 -8 249 369 0 25 chr3 78282269 78282391 -139754767 - MIR SINE MIR -95 167 49 241 274 134 131 chr3 78282407 78282679 -139754479 - L2 LINE L2 -1 3312 3042 2397 89 3 3 chr3 78282679 78282982 -139754176 - AluSx SINE Alu -9 303 1 994 177 0 0 chr3 78282988 78283146 -139754012 - FRAM SINE Alu -8 158 1 241 274 134 131 chr3 78283146 78283202 -139753956 - L2 LINE L2 -275 3038 2976 1789 179 36 0 chr3 78283263 78283564 -139753594 - AluJb SINE Alu 0 312 1 2434 105 0 0 chr3 78283576 78283889 -139753269 - AluSq SINE Alu 0 313 1 195 215 13 165 chr3 78284197 78284236 -139752922 + MIR SINE MIR 154 177 -85 2422 72 7 0 chr3 78284236 78284526 -139752632 + AluSg SINE Alu 2 293 -17 195 215 13 165 chr3 78284526 78284565 -139752593 + MIR SINE MIR 177 220 -42 180 0 0 0 chr3 78284881 78284901 -139752257 + (TCCCC)n Simple_repeat Simple_repeat 4 23 0 2263 114 0 0 chr3 78285381 78285680 -139751478 + AluSx SINE Alu 1 299 -13 1790 187 39 124 chr3 78285727 78285842 -139751316 - L1ME1 LINE L1 -2 6164 6041 282 116 0 0 chr3 78285842 78285885 -139751273 + (TG)n Simple_repeat Simple_repeat 2 44 0 1790 187 39 124 chr3 78285885 78285947 -139751211 - L1ME1 LINE L1 -125 6041 5975 1895 178 0 0 chr3 78285947 78286245 -139750913 + AluJb SINE Alu 1 298 -14 1790 187 39 124 chr3 78286245 78286710 -139750448 - L1ME1 LINE L1 -191 5975 5472 1565 176 0 57 chr3 78286710 78286847 -139750311 + AluSx SINE Alu 1 144 -174 2447 85 0 0 chr3 78286847 78287142 -139750016 + AluSc SINE Alu 1 295 -14 2344 113 0 0 chr3 78287152 78287452 -139749706 + AluSq SINE Alu 4 303 -10 1565 176 0 57 chr3 78287452 78287638 -139749520 + AluSx SINE Alu 153 318 0 1790 187 39 124 chr3 78287638 78287691 -139749467 - L1ME1 LINE L1 -693 5473 5526 2143 128 7 0 chr3 78287755 78288053 -139749105 + AluSx SINE Alu 1 300 -12 452 34 0 0 chr3 78288397 78288456 -139748702 - AluSp/q SINE Alu -12 301 243 349 259 88 107 chr3 78288578 78288794 -139748364 + L1MC4 LINE L1 7605 7816 -226 521 242 25 75 chr3 78288808 78288922 -139748236 + L1MC4 LINE L1 7791 7888 -154 2140 118 34 0 chr3 78288922 78289218 -139747940 + AluSx SINE Alu 1 306 -6 521 242 25 75 chr3 78289218 78289343 -139747815 + L1MC4 LINE L1 7888 8018 -24 304 161 0 16 chr3 78289347 78289409 -139747749 + FLAM SINE Alu 73 133 0 1684 154 64 31 chr3 78289805 78290053 -139747105 + L1MB7 LINE L1 5804 6069 -115 2032 117 57 0 chr3 78290053 78290335 -139746823 + AluSg SINE Alu 1 298 -12 1684 154 64 31 chr3 78290335 78290443 -139746715 + L1MB7 LINE L1 6069 6172 -12 360 229 78 96 chr3 78290580 78290746 -139746412 + MIR3 SINE MIR 33 195 -13 2115 115 4 0 chr3 78290763 78291070 -139746088 - AluSx SINE Alu -4 308 27 1550 108 36 0 chr3 78291205 78291427 -139745731 + MER30 DNA MER1_type 1 230 0 1646 165 6 22 chr3 78292132 78292331 -139744827 - AluJo SINE Alu -2 310 116 221 0 35 0 chr3 78292331 78292360 -139744798 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 1646 165 6 22 chr3 78292360 78292475 -139744683 - AluJo SINE Alu -196 116 1 633 259 108 73 chr3 78292976 78293347 -139743811 + MLT1K LTR MaLR 187 570 -18 271 208 19 0 chr3 78293379 78293432 -139743726 + MLT1K LTR MaLR 522 575 -13 1381 119 57 0 chr3 78293440 78293650 -139743508 + AluSg/x SINE Alu 84 305 -7 1393 172 0 15 chr3 78294014 78294276 -139742882 + AluJb SINE Alu 42 299 -13 1009 174 0 6 chr3 78294279 78294446 -139742712 + AluJo/FRAM SINE Alu 137 302 0 322 200 255 65 chr3 78295615 78295815 -139741343 + MIR SINE MIR 20 257 -5 2085 112 0 3 chr3 78296001 78296305 -139740853 + AluSx SINE Alu 1 303 -9 1876 136 25 0 chr3 78296647 78296933 -139740225 - AluSq SINE Alu -20 293 1 445 137 0 0 chr3 78297578 78297651 -139739507 - FLAM_A SINE Alu 0 142 70 663 126 0 54 chr3 78297666 78297777 -139739381 + FRAM SINE Alu 63 167 -9 439 149 0 0 chr3 78297783 78297850 -139739308 - AluJ/FLAM SINE Alu -244 68 2 1398 156 59 24 chr3 78298068 78298356 -139738802 + AluJo SINE Alu 1 298 -14 383 188 106 100 chr3 78298400 78298469 -139738689 - MER113 DNA MER1_type? -156 365 298 2088 96 4 0 chr3 78298469 78298749 -139738409 + AluSq SINE Alu 1 281 -32 270 0 0 0 chr3 78298753 78298783 -139738375 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 383 188 106 100 chr3 78298783 78298868 -139738290 - MER113 DNA MER1_type? -225 296 205 335 235 47 47 chr3 78298913 78299062 -139738096 - MER113 DNA MER1_type? -318 203 55 2168 108 7 0 chr3 78299433 78299739 -139737419 + AluSx SINE Alu 1 308 -4 3433 153 37 61 chr3 78299886 78300594 -139736564 + LTR8 LTR ERV1 1 691 0 409 229 168 34 chr3 78301994 78302173 -139734985 + MLT1K LTR MaLR 386 588 0 397 191 83 0 chr3 78302179 78302263 -139734895 + MIR SINE MIR 53 143 -119 354 86 57 43 chr3 78302327 78302397 -139734761 + AluSp/q SINE Alu 228 298 -5 2201 193 63 69 chr3 78302424 78302638 -139734520 + L1ME1 LINE L1 5497 5711 -455 2152 114 0 0 chr3 78302638 78302944 -139734214 + AluSx SINE Alu 1 306 -6 2201 193 63 69 chr3 78302944 78303108 -139734050 + L1ME1 LINE L1 5711 5874 -292 2009 125 3 7 chr3 78303108 78303404 -139733754 + AluSx SINE Alu 1 295 -17 2201 193 63 69 chr3 78303404 78303691 -139733467 + L1ME1 LINE L1 5874 6159 -7 1495 159 35 52 chr3 78303723 78304012 -139733146 - AluJb SINE Alu -28 284 1 1580 133 42 56 chr3 78304565 78304880 -139732278 + AluJb SINE Alu 1 311 0 1795 149 27 0 chr3 78304958 78305254 -139731904 + AluJb SINE Alu 5 308 -4 2281 75 0 7 chr3 78305254 78305561 -139731597 + AluY SINE Alu 1 305 -6 397 74 0 0 chr3 78305841 78305895 -139731263 - L1MA3 LINE L1 0 6305 6252 1754 151 0 32 chr3 78305895 78306206 -139730952 - AluJb SINE Alu -11 301 1 479 233 188 55 chr3 78306349 78306551 -139730607 + MLT1L LTR MaLR 382 610 -5 1511 116 0 5 chr3 78306909 78307125 -139730033 - AluJb SINE Alu -95 217 3 297 0 0 0 chr3 78307136 78307169 -139729989 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 608 68 0 0 chr3 78307171 78307245 -139729913 - AluSp/q SINE Alu -23 290 217 483 168 15 14 chr3 78307287 78307410 -139729748 - Tigger3(Golem) DNA MER2_type -2818 211 2 771 228 35 35 chr3 78307810 78307825 -139729333 - MER33 DNA MER1_type -2330 255 241 2122 112 16 0 chr3 78307825 78308129 -139729029 + AluSx SINE Alu 2 310 -2 771 228 35 35 chr3 78308129 78308168 -139728990 - MER33 DNA MER1_type -2344 241 203 537 254 0 0 chr3 78308168 78308282 -139728876 + MER81 DNA DNA 1 114 0 771 228 35 35 chr3 78308282 78308481 -139728677 - MER33 DNA MER1_type -2381 204 1 1855 130 30 13 chr3 78308571 78308770 -139728388 - AluSp SINE Alu 0 313 132 2059 114 3 0 chr3 78308770 78309068 -139728090 - AluSx SINE Alu -13 299 1 1855 130 30 13 chr3 78309068 78309202 -139727956 - AluSp SINE Alu -181 132 2 1126 66 7 7 chr3 78309209 78309361 -139727797 - L1PA10 LINE L1 -1 6167 6016 582 185 113 2 chr3 78309566 78309710 -139727448 - MIR SINE MIR -62 146 41 712 171 8 0 chr3 78310434 78310563 -139726595 + FLAM_C SINE Alu 3 132 -1 1678 160 13 13 chr3 78310781 78311087 -139726071 - AluJb SINE Alu -2 310 5 338 300 0 10 chr3 78311131 78311231 -139725927 - Tigger7 DNA MER2_type 0 2487 2389 * 1204 202 89 8 chr3 78311229 78311476 -139725682 - Tigger7 DNA MER2_type -2220 267 1 387 298 46 30 chr3 78311483 78311614 -139725544 - MIR SINE MIR -109 153 21 1386 134 69 79 chr3 78313901 78314026 -139723132 + AluSx SINE Alu 1 126 -186 2176 92 23 7 chr3 78314026 78314332 -139722826 + AluSq SINE Alu 1 311 -2 1386 134 69 79 chr3 78314332 78314496 -139722662 + AluSx SINE Alu 126 287 -25 430 261 35 9 chr3 78316024 78316139 -139721019 - MIR SINE MIR -51 211 94 1439 110 41 23 chr3 78316534 78316752 -139720406 - MER30 DNA MER1_type -8 222 1 269 234 47 0 chr3 78318704 78318768 -139718390 - MER113 DNA MER1_type? -3 518 452 334 113 32 0 chr3 78318789 78318851 -139718307 - MER113 DNA MER1_type? -331 190 127 776 167 0 0 chr3 78318856 78318976 -139718182 + AluJ SINE Alu 17 136 -176 1930 144 6 10 chr3 78318976 78319289 -139717869 + AluSx SINE Alu 1 312 0 846 192 0 13 chr3 78319312 78319468 -139717690 + AluJ SINE Alu 129 282 -30 24 0 0 0 chr3 78319487 78319511 -139717647 + AT_rich Low_complexity Low_complexity 1 24 0 252 59 0 0 chr3 78320306 78320340 -139716818 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 384 281 156 21 chr3 78320407 78320599 -139716559 + MIR SINE MIR 3 220 -42 314 283 64 35 chr3 78320632 78320805 -139716353 + MIR SINE MIR 74 251 -11 1881 130 3 20 chr3 78321248 78321548 -139715610 + AluSx SINE Alu 7 301 -11 1733 174 0 0 chr3 78323066 78323359 -139713799 + AluSx SINE Alu 1 293 -19 327 359 38 0 chr3 78324012 78324118 -139713040 - L2 LINE L2 -1 3271 3162 224 186 6 24 chr3 78324200 78324273 -139712885 - L2 LINE L2 -314 2960 2889 1912 111 0 50 chr3 78324319 78324655 -139712503 + AluSq SINE Alu 1 321 0 212 196 20 20 chr3 78324756 78324807 -139712351 + MIR SINE MIR 90 140 -122 2256 173 94 43 chr3 78325422 78325508 -139711650 - L1MD1 LINE L1 0 6242 6162 1787 92 96 0 chr3 78325508 78325768 -139711390 + AluSx SINE Alu 2 286 -26 2256 173 94 43 chr3 78325768 78326213 -139710945 - L1MD1 LINE L1 -80 6162 5684 243 0 0 0 chr3 78326214 78326241 -139710917 + (TG)n Simple_repeat Simple_repeat 1 27 0 2468 241 66 39 chr3 78326255 78327027 -139710131 + MER21B LTR ERV1 5 797 -66 1813 156 37 94 chr3 78327127 78327198 -139709960 - L1MD1 LINE L1 -573 5669 5596 1846 156 0 19 chr3 78327198 78327513 -139709645 - AluJb SINE Alu -3 309 1 1813 156 37 94 chr3 78327513 78327949 -139709209 - L1MD1 LINE L1 -646 5596 5186 1732 235 106 10 chr3 78328204 78328779 -139708379 - L1MD1 LINE L1 -979 5167 4538 2378 56 0 23 chr3 78328780 78329085 -139708073 - AluY SINE Alu -13 298 1 398 257 0 18 chr3 78329086 78329195 -139707963 - L1MD1 LINE L1 -2295 3851 3745 2973 165 60 24 chr3 78329195 78329778 -139707380 + Tigger3b DNA MER2_type 2 605 -626 1690 139 3 48 chr3 78329778 78330087 -139707071 + AluSx SINE Alu 1 295 -17 591 253 57 16 chr3 78330092 78330286 -139706872 - L1 LINE L1 -2042 4104 3903 562 261 0 6 chr3 78330303 78330464 -139706694 + L1P LINE L1 3310 3469 -2677 202 283 0 19 chr3 78330577 78330630 -139706528 + MER5A DNA MER1_type 131 182 -7 903 159 0 0 chr3 78330690 78330822 -139706336 - FLAM_C SINE Alu 0 133 2 1501 182 36 0 chr3 78330969 78331244 -139705914 + AluJo SINE Alu 5 289 -23 2113 115 28 61 chr3 78331246 78331281 -139705877 - Tigger3(Golem) DNA MER2_type -251 2778 2743 2058 118 0 31 chr3 78331281 78331603 -139705555 + AluSx SINE Alu 1 312 0 2113 115 28 61 chr3 78331603 78331809 -139705349 - Tigger3(Golem) DNA MER2_type -286 2743 2554 2345 91 0 0 chr3 78331809 78332117 -139705041 + AluSc SINE Alu 1 308 -1 2113 115 28 61 chr3 78332117 78332299 -139704859 - Tigger3(Golem) DNA MER2_type -475 2554 2368 2027 114 3 10 chr3 78332299 78332598 -139704560 + AluSx SINE Alu 1 297 -15 234 0 0 0 chr3 78332598 78332624 -139704534 + (TA)n Simple_repeat Simple_repeat 1 26 0 231 161 97 0 chr3 78332639 78332701 -139704457 + Tigger3(Golem) DNA MER2_type 196 263 -2766 903 110 0 8 chr3 78332701 78332828 -139704330 + AluSq/x SINE Alu 1 126 -186 1523 116 0 5 chr3 78332844 78333060 -139704098 - AluJb SINE Alu -95 217 3 261 0 0 0 chr3 78333071 78333100 -139704058 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 608 68 0 0 chr3 78333102 78333176 -139703982 - AluSp/q SINE Alu -23 290 217 483 168 15 14 chr3 78333218 78333341 -139703817 - Tigger3(Golem) DNA MER2_type -2818 211 2 2201 73 13 10 chr3 78333756 78334057 -139703101 + AluSx SINE Alu 2 303 -9 634 274 36 77 chr3 78334113 78334609 -139702549 + L1MC4 LINE L1 7524 7999 -43 2203 100 0 13 chr3 78334626 78334936 -139702222 - AluSx SINE Alu -6 306 1 201 241 24 96 chr3 78335316 78335399 -139701759 + MIR SINE MIR 74 150 -112 1857 132 0 20 chr3 78336330 78336633 -139700525 + AluSq SINE Alu 1 297 -16 2205 101 3 0 chr3 78336633 78336930 -139700228 + AluSg SINE Alu 1 298 -12 2359 78 0 0 chr3 78337874 78338169 -139698989 + AluSg SINE Alu 1 295 -15 285 130 14 72 chr3 78338204 78338273 -139698885 - MER116 DNA Mariner -15 65 1 429 231 98 30 chr3 78340458 78340661 -139696497 + L1MC5 LINE L1 7701 7917 -44 1752 137 0 20 chr3 78340664 78340957 -139696201 + AluJb SINE Alu 1 287 -25 1164 132 0 37 chr3 78340778 78340967 -139696191 + AluJb SINE Alu 113 294 -18 207 235 0 0 chr3 78341054 78341105 -139696053 + (TG)n Simple_repeat Simple_repeat 2 52 0 302 335 32 38 chr3 78341153 78341311 -139695847 - L1MC/D LINE L1 -2204 5604 5448 206 272 108 44 chr3 78341911 78342069 -139695089 + L2 LINE L2 2842 3009 -263 24 0 0 0 chr3 78342447 78342471 -139694687 + AT_rich Low_complexity Low_complexity 1 24 0 397 192 39 0 chr3 78342649 78342727 -139694431 - MER45A DNA AcHobo 0 178 98 857 253 6 0 chr3 78343095 78343261 -139693897 - MER5A DNA MER1_type 0 189 23 1624 268 20 43 chr3 78343316 78343823 -139693335 + MLT1E LTR MaLR 55 549 -44 437 184 184 0 chr3 78343845 78343943 -139693215 - MER45A DNA AcHobo -61 117 2 339 25 0 0 chr3 78344238 78344278 -139692880 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 180 97 0 0 chr3 78345305 78345336 -139691822 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2529 93 0 0 chr3 78345846 78346158 -139691000 + AluSx SINE Alu 1 312 0 207 69 0 0 chr3 78346179 78346208 -139690950 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2312 92 3 0 chr3 78346211 78346553 -139690605 + AluSx SINE Alu 1 343 0 1385 193 45 22 chr3 78346934 78347245 -139689913 - L1MDa LINE L1 -6205 335 18 856 180 80 134 chr3 78347268 78347294 -139689864 - L1MC5 LINE L1 -36 7925 7899 2159 127 7 19 chr3 78347294 78347602 -139689556 + AluSq SINE Alu 1 304 -9 2182 114 7 0 chr3 78347602 78347891 -139689267 + AluSq SINE Alu 1 291 -22 2325 82 7 0 chr3 78347891 78348184 -139688974 + AluSg SINE Alu 1 295 -15 856 180 80 134 chr3 78348184 78348509 -139688649 - L1MC5 LINE L1 -60 7901 7603 2143 94 11 0 chr3 78348509 78348808 -139688350 - AluSc SINE Alu 0 302 1 856 180 80 134 chr3 78348808 78348951 -139688207 - L1MC5 LINE L1 -358 7603 7454 1366 199 10 35 chr3 78349339 78349651 -139687507 + AluJb SINE Alu 1 304 -8 3057 116 20 113 chr3 78350411 78351049 -139686109 + L1MB3 LINE L1 5605 6183 0 26 0 0 0 chr3 78351063 78351089 -139686069 + AT_rich Low_complexity Low_complexity 1 26 0 2390 84 3 3 chr3 78351431 78351728 -139685430 - AluSc SINE Alu -12 297 1 1970 94 0 0 chr3 78352012 78352256 -139684902 + AluSx SINE Alu 39 282 -30 2448 96 0 3 chr3 78352278 78352590 -139684568 + AluY SINE Alu 1 311 0 1805 163 11 0 chr3 78352606 78352882 -139684276 + AluJb SINE Alu 1 279 -33 370 264 27 9 chr3 78352913 78353000 -139684158 + L2 LINE L2 2927 3018 -295 1667 214 93 30 chr3 78353000 78353439 -139683719 - MLT1C LTR MaLR 0 467 1 370 264 27 9 chr3 78353439 78353461 -139683697 + L2 LINE L2 3018 3038 -275 1905 133 0 7 chr3 78353462 78353756 -139683402 - MER50 LTR ERV1 -23 711 420 1056 124 17 53 chr3 78353753 78353975 -139683183 + MER21A LTR ERV1 75 369 -284 * 2320 90 0 10 chr3 78353979 78354278 -139682880 + AluSc SINE Alu 6 301 -8 2503 142 75 42 chr3 78354281 78354801 -139682357 + MER21A LTR ERV1 395 931 0 482 240 45 127 chr3 78354802 78355023 -139682135 + L1MC5 LINE L1 7720 7922 -39 657 152 66 53 chr3 78355040 78355191 -139681967 - L1MB4 LINE L1 0 6180 6028 2352 106 0 0 chr3 78355193 78355496 -139681662 + AluSx SINE Alu 1 303 -9 653 258 71 5 chr3 78356140 78356338 -139680820 + MIR SINE MIR 47 257 -5 2217 94 3 17 chr3 78356379 78356676 -139680482 + AluSx SINE Alu 11 303 -9 1144 138 0 0 chr3 78356676 78356836 -139680322 + AluSg/x SINE Alu 135 294 -18 888 261 43 22 chr3 78356951 78357181 -139679977 + MIR SINE MIR 7 241 -21 2128 128 24 0 chr3 78357321 78357619 -139679539 + AluSx SINE Alu 4 308 -4 364 346 92 0 chr3 78357643 78357773 -139679385 - MIR SINE MIR -115 147 6 2476 143 62 0 chr3 78358261 78358680 -139678478 - MER83 LTR ERV1 0 448 4 346 114 11 148 chr3 78359160 78359214 -139677944 - MER45A DNA AcHobo -1428 153 114 1747 166 3 20 chr3 78359214 78359350 -139677808 + AluJb SINE Alu 1 138 -174 2173 117 0 0 chr3 78359350 78359663 -139677495 + AluSx SINE Alu 1 313 0 1747 166 3 20 chr3 78359663 78359821 -139677337 + AluJb SINE Alu 138 291 -21 346 114 11 148 chr3 78359821 78359854 -139677304 - MER45A DNA AcHobo -1467 114 78 212 293 69 0 chr3 78360113 78360171 -139676987 - MIR SINE MIR -91 171 110 983 171 6 24 chr3 78360174 78360344 -139676814 + FRAM SINE Alu 2 168 -8 2380 82 0 10 chr3 78360349 78360655 -139676503 + AluSg SINE Alu 1 303 -7 1716 107 165 0 chr3 78361246 78361507 -139675651 + AluJo SINE Alu 1 304 -8 300 174 50 220 chr3 78361519 78361630 -139675528 + L1MC3 LINE L1 7367 7495 -500 1530 191 25 4 chr3 78361630 78361907 -139675251 + AluJo SINE Alu 6 288 -24 2162 97 0 47 chr3 78361910 78362093 -139675065 - AluSq SINE Alu 0 316 152 2124 116 35 0 chr3 78362093 78362378 -139674780 - AluSg SINE Alu -15 295 1 2162 97 0 47 chr3 78362378 78362524 -139674634 - AluSq SINE Alu -164 152 1 1794 122 78 11 chr3 78362528 78362798 -139674360 - AluSg SINE Alu -20 290 3 300 174 50 220 chr3 78362798 78362894 -139674264 + L1MC3 LINE L1 7500 7759 -236 1058 182 0 0 chr3 78362895 78363065 -139674093 - FAM SINE Alu -5 170 1 481 281 27 0 chr3 78363066 78363212 -139673946 - L1MD3 LINE L1 -435 7560 7411 448 146 21 62 chr3 78363212 78363308 -139673850 - MLT1F1 LTR MaLR -433 134 43 1958 106 49 0 chr3 78363352 78363616 -139673542 + AluSc SINE Alu 1 277 -32 2029 93 0 0 chr3 78363786 78364043 -139673115 + AluY SINE Alu 53 309 -2 1791 172 40 0 chr3 78364065 78364362 -139672796 + AluSx SINE Alu 1 309 -3 2387 91 10 0 chr3 78364709 78365007 -139672151 + AluSp SINE Alu 1 301 -12 2118 131 7 0 chr3 78365351 78365649 -139671509 - AluSx SINE Alu -12 300 1 1891 193 38 109 chr3 78365713 78365766 -139671392 + L1ME1 LINE L1 5526 5581 -585 1564 176 0 57 chr3 78365766 78365948 -139671210 - AluSx SINE Alu 0 314 123 2344 113 0 0 chr3 78365948 78366248 -139670910 - AluSq SINE Alu -10 303 4 2454 85 0 0 chr3 78366258 78366553 -139670605 - AluSc SINE Alu -14 295 1 1564 176 0 57 chr3 78366553 78366690 -139670468 - AluSx SINE Alu -200 114 1 1891 193 38 109 chr3 78366690 78367155 -139670003 + L1ME1 LINE L1 5581 6078 -88 1895 178 0 0 chr3 78367155 78367453 -139669705 - AluJb SINE Alu -14 298 1 1891 193 38 109 chr3 78367453 78367515 -139669643 + L1ME1 LINE L1 6078 6143 -23 321 118 0 0 chr3 78367515 78367566 -139669592 + (CA)n Simple_repeat Simple_repeat 2 52 0 216 0 0 0 chr3 78367565 78367589 -139669569 + (TA)n Simple_repeat Simple_repeat 2 25 0 * 1891 193 38 109 chr3 78367566 78367693 -139669465 + L1ME1 LINE L1 6143 6164 -2 2201 124 0 0 chr3 78367740 78368039 -139669119 - AluSx SINE Alu -13 299 1 180 0 0 0 chr3 78368519 78368539 -139668619 + (GGGGA)n Simple_repeat Simple_repeat 4 23 0 2410 76 7 0 chr3 78368894 78369184 -139667974 - AluSg SINE Alu -17 293 2 202 167 28 0 chr3 78369188 78369224 -139667934 - MIR SINE MIR -72 190 154 2450 102 0 0 chr3 78369532 78369845 -139667313 + AluSq SINE Alu 1 313 0 1764 183 36 0 chr3 78369857 78370158 -139667000 + AluJb SINE Alu 1 312 0 994 177 0 0 chr3 78370275 78370433 -139666725 + FRAM SINE Alu 1 158 -8 2117 131 0 10 chr3 78370439 78370751 -139666407 + AluSx SINE Alu 1 309 -3 1306 171 37 0 chr3 78370825 78371041 -139666117 - AluJb SINE Alu -13 299 76 2186 72 76 3 chr3 78372106 78372396 -139664762 + AluY SINE Alu 1 311 0 338 260 0 50 chr3 78372736 78372836 -139664322 + MER117 DNA MER1_type 68 162 -35 2221 123 3 16 chr3 78373460 78373776 -139663382 + AluSq SINE Alu 1 312 -1 477 311 97 10 chr3 78374379 78374585 -139662573 - MIR SINE MIR -32 230 7 306 217 29 14 chr3 78374605 78374674 -139662484 - MIR SINE MIR -81 181 112 1710 156 48 38 chr3 78374922 78375087 -139662071 - AluJb SINE Alu -20 292 121 236 53 26 0 chr3 78375087 78375125 -139662033 + (TG)n Simple_repeat Simple_repeat 1 39 0 1710 156 48 38 chr3 78375125 78375248 -139661910 - AluJb SINE Alu -191 121 1 21 0 0 0 chr3 78375318 78375339 -139661819 + AT_rich Low_complexity Low_complexity 1 21 0 1309 201 83 47 chr3 78375619 78376041 -139661117 - MER113 DNA MER1_type? -82 439 3 215 268 216 21 chr3 78376043 78376140 -139661018 - MIR3 SINE MIR -48 160 45 1061 121 0 0 chr3 78376141 78376281 -139660877 + AluSq/x SINE Alu 1 140 -172 1634 153 46 7 chr3 78376282 78376564 -139660594 + AluSg SINE Alu 1 293 -17 318 305 32 0 chr3 78377681 78377776 -139659382 - MIR SINE MIR -6 256 159 1634 167 11 0 chr3 78377780 78378043 -139659115 - AluSx SINE Alu -13 299 34 330 297 7 29 chr3 78378265 78378291 -139658867 + GA-rich Low_complexity Low_complexity 5 30 -109 1868 168 7 0 chr3 78378291 78378600 -139658558 + AluJb SINE Alu 1 311 -1 330 297 7 29 chr3 78378600 78378711 -139658447 + GA-rich Low_complexity Low_complexity 30 139 0 2193 121 10 0 chr3 78378711 78379009 -139658149 + AluSc SINE Alu 1 301 -8 297 276 111 89 chr3 78379288 78379513 -139657645 - MIR SINE MIR -1 261 32 1750 133 107 0 chr3 78380328 78380598 -139656560 + AluSx SINE Alu 1 299 -13 2193 108 14 0 chr3 78380598 78380895 -139656263 + AluSg SINE Alu 1 301 -9 408 258 31 23 chr3 78381007 78381135 -139656023 + MIR SINE MIR 114 242 -20 309 315 144 9 chr3 78381478 78381589 -139655569 - L2 LINE L2 -5 3267 3142 1910 154 13 7 chr3 78381637 78381943 -139655215 + AluJo SINE Alu 1 308 -4 432 0 0 0 chr3 78383612 78383660 -139653498 + (CA)n Simple_repeat Simple_repeat 2 49 0 248 139 0 0 chr3 78384189 78384225 -139652933 + MIR SINE MIR 113 148 -114 1408 197 17 35 chr3 78384227 78384560 -139652598 - LTR56 LTR ERV1 0 444 139 1466 172 30 53 chr3 78384560 78384862 -139652296 - AluJo SINE Alu -17 295 1 1408 197 17 35 chr3 78384862 78384891 -139652267 - LTR56 LTR ERV1 -305 139 111 2188 123 0 7 chr3 78384891 78385199 -139651959 + AluSx SINE Alu 1 306 -6 1262 133 0 0 chr3 78385199 78385380 -139651778 + AluSc SINE Alu 124 304 -5 621 138 26 9 chr3 78385387 78385503 -139651655 - LTR56 LTR ERV1 -327 118 1 2342 109 0 6 chr3 78386153 78386466 -139650692 + AluSp SINE Alu 1 311 -2 421 235 118 0 chr3 78387042 78387178 -139649980 + Charlie7 DNA MER1_type 6 157 -2455 249 98 0 0 chr3 78387197 78387238 -139649920 + (TA)n Simple_repeat Simple_repeat 1 41 0 1985 122 23 16 chr3 78387352 78387656 -139649502 + AluSq SINE Alu 1 306 -7 293 238 19 76 chr3 78387802 78387907 -139649251 + L2 LINE L2 2985 3083 -189 269 200 233 42 chr3 78387957 78388077 -139649081 + MER5A DNA MER1_type 39 181 -8 290 254 123 23 chr3 78388102 78388232 -139648926 + L2 LINE L2 3165 3307 -6 193 294 59 24 chr3 78388291 78388376 -139648782 + L3 LINE CR1 717 804 -773 660 269 53 10 chr3 78388422 78388630 -139648528 - MIR SINE MIR -41 221 5 2409 87 3 0 chr3 78388678 78388977 -139648181 + AluSg SINE Alu 1 300 -10 294 293 57 42 chr3 78389137 78389349 -139647809 + L3 LINE CR1 1348 1562 -15 722 218 185 5 chr3 78389575 78389786 -139647372 - MIR SINE MIR -5 257 9 2123 121 7 0 chr3 78389872 78390161 -139646997 - AluSp SINE Alu -22 291 1 226 282 153 16 chr3 78391248 78391372 -139645786 + MIR SINE MIR 17 157 -105 2347 86 13 10 chr3 78391472 78391774 -139645384 - AluSx SINE Alu -9 303 1 2087 104 7 0 chr3 78392491 78392769 -139644389 + AluSg SINE Alu 1 280 -30 264 137 0 0 chr3 78393562 78393613 -139643545 + (CA)n Simple_repeat Simple_repeat 1 51 0 227 178 178 0 chr3 78393977 78394050 -139643108 + MIR SINE MIR 60 145 -63 213 152 0 91 chr3 78395310 78395376 -139641782 + (CCCCG)n Simple_repeat Simple_repeat 4 63 0 251 342 0 17 chr3 78395637 78395754 -139641404 - L2 LINE L2 -20 3293 3179 1098 198 27 31 chr3 78395819 78396077 -139641081 - MLT1D LTR MaLR 0 505 249 2467 100 0 0 chr3 78396077 78396388 -139640770 + AluSx SINE Alu 1 311 -1 2403 87 7 0 chr3 78396853 78397152 -139640006 - AluSp SINE Alu -8 305 5 2253 96 17 0 chr3 78397181 78397473 -139639685 - AluSx SINE Alu -15 297 1 594 237 58 83 chr3 78397501 78397898 -139639260 + HAL1 LINE L1 1009 1395 -1112 * 1226 181 106 4 chr3 78397892 78398157 -139639001 + L1MB5 LINE L1 5883 6174 0 330 198 70 12 chr3 78398166 78398252 -139638906 + HAL1 LINE L1 1372 1462 -1045 435 243 35 89 chr3 78398264 78398312 -139638846 - MLT1I LTR MaLR -6 403 354 2019 98 87 0 chr3 78398312 78398588 -139638570 - AluSp SINE Alu -13 300 1 435 243 35 89 chr3 78398588 78398708 -139638450 - MLT1I LTR MaLR -55 354 244 871 233 76 0 chr3 78398979 78399189 -139637969 + HAL1 LINE L1 1521 1746 -761 342 263 127 24 chr3 78399205 78399418 -139637740 + HAL1 LINE L1 1924 2158 -349 1050 75 0 15 chr3 78399419 78399552 -139637606 + AluSc SINE Alu 1 131 -178 2304 75 3 27 chr3 78399559 78399853 -139637305 + AluY SINE Alu 1 287 -24 197 0 71 0 chr3 78399857 78399885 -139637273 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 989 182 0 0 chr3 78400521 78400691 -139636467 - AluSg/x SINE Alu -9 301 132 2227 100 13 3 chr3 78400691 78400991 -139636167 - AluSq SINE Alu -10 303 1 472 232 65 26 chr3 78400991 78401146 -139636012 + MIR SINE MIR 78 238 -24 2336 86 0 7 chr3 78401496 78401797 -139635361 - AluSc SINE Alu -10 299 1 460 156 21 62 chr3 78401841 78401937 -139635221 + MLT1F1 LTR MaLR 43 134 -433 491 281 27 0 chr3 78401937 78402083 -139635075 + L1MD3 LINE L1 7411 7560 -435 1023 182 0 0 chr3 78402084 78402254 -139634904 + FAM SINE Alu 1 170 -5 277 185 99 25 chr3 78402255 78402336 -139634822 - L1MD3 LINE L1 -236 7759 7673 341 362 11 21 chr3 78402556 78402744 -139634414 - MIR SINE MIR -31 231 46 2053 119 0 7 chr3 78402747 78403067 -139634091 + AluSx SINE Alu 1 318 0 26 0 0 0 chr3 78403582 78403608 -139633550 + AT_rich Low_complexity Low_complexity 1 26 0 503 117 0 13 chr3 78403623 78403700 -139633458 + AluS SINE Alu 2 77 -236 297 0 0 0 chr3 78403701 78403734 -139633424 + (TA)n Simple_repeat Simple_repeat 1 33 0 270 224 141 28 chr3 78403791 78404003 -139633155 + L1MC/D LINE L1 5558 5665 -456 1145 228 9 0 chr3 78404238 78404457 -139632701 + MER58A DNA MER1_type 4 224 0 230 271 212 0 chr3 78404587 78404672 -139632486 - L2 LINE L2 -6 3307 3205 345 197 0 0 chr3 78406749 78406825 -139630333 + (CA)n Simple_repeat Simple_repeat 2 77 0 275 260 98 16 chr3 78407338 78407461 -139629697 + MIR SINE MIR 12 144 -118 437 206 127 0 chr3 78407569 78407695 -139629463 - MER117 DNA MER1_type -50 147 6 1080 158 9 68 chr3 78408532 78408576 -139628582 + AluJo SINE Alu 83 128 -184 2090 141 3 10 chr3 78408576 78408888 -139628270 - AluSq SINE Alu -3 310 1 1080 158 9 68 chr3 78408888 78409064 -139628094 + AluJo SINE Alu 128 290 -22 1741 131 23 36 chr3 78409475 78409781 -139627377 - AluSg SINE Alu -7 303 2 1311 125 10 2 chr3 78409899 78411624 -139625534 + ALR/Alpha Satellite centromeric 1 1738 -54 1195 141 11 5 chr3 78411748 78413025 -139624133 + ALR/Alpha Satellite centromeric 1 1284 -76 1299 155 4 1 chr3 78413146 78415628 -139621530 + ALR/Alpha Satellite centromeric 1 2488 -18 22 0 0 0 chr3 78415995 78416017 -139621141 + AT_rich Low_complexity Low_complexity 1 22 0 193 353 20 10 chr3 78416494 78416596 -139620562 - L2 LINE L2 -815 2499 2397 996 212 38 0 chr3 78416636 78416820 -139620338 + Tigger3(Golem) DNA MER2_type 1 191 -2838 1160 159 8 1 chr3 78416924 78418183 -139618975 + ALR/Alpha Satellite centromeric 1 1267 -42 1226 143 3 1 chr3 78419567 78420578 -139616580 + ALR/Alpha Satellite centromeric 1 1013 0 343 254 15 8 chr3 78420692 78420822 -139616336 + ALR/Alpha Satellite centromeric 42 172 0 * 1279 137 9 3 chr3 78420709 78421880 -139615278 + ALR/Alpha Satellite centromeric 1 1179 -30 1226 145 3 2 chr3 78421989 78423002 -139614156 + ALR/Alpha Satellite centromeric 1 1014 -1 1566 201 46 12 chr3 78423123 78423447 -139613711 - L1MDa LINE L1 -6188 352 18 2140 126 7 19 chr3 78423496 78423805 -139613353 + AluSq SINE Alu 1 305 -8 2160 114 7 0 chr3 78423805 78424094 -139613064 + AluSq SINE Alu 1 291 -22 2311 82 7 0 chr3 78424094 78424387 -139612771 + AluSg SINE Alu 1 295 -15 863 196 109 117 chr3 78424395 78424711 -139612447 - L1MC5 LINE L1 -64 7897 7584 2176 94 7 0 chr3 78424711 78425011 -139612147 - AluSc SINE Alu 0 302 1 863 196 109 117 chr3 78425011 78425214 -139611944 - L1MC5 LINE L1 -377 7584 7381 1323 197 10 36 chr3 78425542 78425851 -139611307 + AluJb SINE Alu 1 301 -11 3082 116 20 113 chr3 78426614 78427252 -139609906 + L1MB3 LINE L1 5605 6183 0 26 0 0 0 chr3 78427266 78427292 -139609866 + AT_rich Low_complexity Low_complexity 1 26 0 2430 75 17 0 chr3 78427634 78427929 -139609229 - AluSx SINE Alu -12 300 1 338 148 0 33 chr3 78427929 78427990 -139609168 + MLT1F1 LTR MaLR 503 561 -6 23 33 0 0 chr3 78427990 78428020 -139609138 + AT_rich Low_complexity Low_complexity 1 30 0 1297 170 0 14 chr3 78428028 78428246 -139608912 - AluJo SINE Alu -71 241 27 21 36 0 0 chr3 78428275 78428303 -139608855 + AT_rich Low_complexity Low_complexity 1 28 0 1553 105 4 77 chr3 78428303 78428550 -139608608 - AluSx SINE Alu -83 229 1 696 203 0 0 chr3 78428892 78429025 -139608133 + FLAM_C SINE Alu 1 133 0 240 163 0 0 chr3 78429633 78429676 -139607482 + T-rich Low_complexity Low_complexity 5 47 0 2312 93 13 0 chr3 78429689 78429989 -139607169 - AluSp SINE Alu -8 305 2 2181 99 7 3 chr3 78430291 78430594 -139606564 + AluSc SINE Alu 1 304 -5 310 359 147 6 chr3 78430901 78431057 -139606101 + L2 LINE L2 3095 3272 0 2328 86 20 0 chr3 78431109 78431413 -139605745 + AluSp SINE Alu 1 310 -3 1415 168 43 12 chr3 78431762 78432018 -139605140 + AluJb SINE Alu 41 304 -8 306 282 213 24 chr3 78432030 78432410 -139604748 - L1ME4a LINE L1 -72 6049 5598 2369 92 0 0 chr3 78432427 78432720 -139604438 - AluSq SINE Alu -20 293 1 710 268 50 39 chr3 78432767 78433047 -139604111 - MARNA DNA Mariner -219 367 85 282 378 14 20 chr3 78433305 78433453 -139603705 - MIR3 SINE MIR -60 148 2 2097 106 14 3 chr3 78437514 78437806 -139599352 + AluSx SINE Alu 14 308 -4 1930 180 0 0 chr3 78437876 78438187 -139598971 + AluJb SINE Alu 1 311 -1 2422 93 7 0 chr3 78438464 78438774 -139598384 + AluSp SINE Alu 1 312 -1 2323 100 0 0 chr3 78440403 78440693 -139596465 + AluSg SINE Alu 1 290 -20 426 39 0 0 chr3 78441147 78441199 -139595959 + (TGGA)n Simple_repeat Simple_repeat 1 52 0 1261 384 9 44 chr3 78442063 78442383 -139594775 - AluSq SINE Alu -4 309 1 1249 161 14 9 chr3 78442389 78442607 -139594551 + MER20 DNA MER1_type 1 219 0 382 266 31 73 chr3 78442762 78442954 -139594204 + MLT1K LTR MaLR 81 264 -324 615 235 5 85 chr3 78443537 78443737 -139593421 + MIR SINE MIR 48 231 -31 510 96 0 0 chr3 78444529 78444602 -139592556 - AluJ SINE Alu -2 307 235 2011 106 4 0 chr3 78444674 78444948 -139592210 + AluSx SINE Alu 1 275 -37 1432 172 57 14 chr3 78444970 78445267 -139591891 - MLT1A1 LTR MaLR 0 365 56 628 168 0 0 chr3 78445392 78445493 -139591665 - AluJ SINE Alu -79 233 133 28 0 0 0 chr3 78445495 78445523 -139591635 + AT_rich Low_complexity Low_complexity 1 28 0 1357 134 0 19 chr3 78445523 78445732 -139591426 - AluSx SINE Alu -77 235 31 768 167 8 8 chr3 78445746 78445872 -139591286 - AluJ SINE Alu -176 126 1 298 170 75 74 chr3 78446201 78446282 -139590876 + MIR SINE MIR 64 145 -63 249 232 18 0 chr3 78446673 78446729 -139590429 - MIR SINE MIR -124 138 82 2131 151 6 0 chr3 78446864 78447188 -139589970 - MER7A DNA MER2_type 0 346 23 850 115 0 15 chr3 78447188 78447200 -139589958 - AluSq/x SINE Alu -179 134 123 198 0 0 0 chr3 78447200 78447222 -139589936 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 850 115 0 15 chr3 78447222 78447339 -139589819 - AluSq/x SINE Alu -190 123 7 2213 105 3 0 chr3 78447347 78447652 -139589506 - AluSq SINE Alu -7 306 1 1923 130 7 0 chr3 78447669 78447962 -139589196 - AluSx SINE Alu -11 301 7 1842 146 10 3 chr3 78448005 78448300 -139588858 - AluSx SINE Alu -9 303 7 1343 160 0 21 chr3 78448301 78448538 -139588620 - AluJo SINE Alu -76 236 5 595 262 124 13 chr3 78448550 78448775 -139588383 - L1MB8 LINE L1 -2 6176 5927 1904 146 10 0 chr3 78448826 78449135 -139588023 + AluSx SINE Alu 1 312 0 893 71 0 0 chr3 78449173 78449286 -139587872 + AluSq/x SINE Alu 1 113 -200 225 0 0 0 chr3 78449297 78449322 -139587836 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 183 42 0 0 chr3 78449570 78449594 -139587564 + (GCCTG)n Simple_repeat Simple_repeat 3 26 0 530 273 53 7 chr3 78450272 78450422 -139586736 - MIR SINE MIR -104 158 2 2141 173 40 24 chr3 78450613 78451069 -139586089 + MLT1C LTR MaLR 1 463 -4 521 192 96 8 chr3 78451078 78451203 -139585955 + LTR37B LTR ERV1 330 465 -3 219 316 154 8 chr3 78451796 78451913 -139585245 + MIR3 SINE MIR 9 142 -66 1719 93 4 0 chr3 78452182 78452408 -139584750 - AluSq SINE Alu -86 227 1 518 211 135 6 chr3 78452439 78452595 -139584563 + MER104 DNA MER2_type 5 180 0 1466 160 31 35 chr3 78452652 78452939 -139584219 - AluJb SINE Alu -25 287 2 1608 138 64 7 chr3 78453448 78453731 -139583427 - AluJb SINE Alu -13 299 1 21 0 0 0 chr3 78453741 78453762 -139583396 + AT_rich Low_complexity Low_complexity 1 21 0 232 274 0 0 chr3 78453878 78453940 -139583218 + MER117 DNA MER1_type 28 89 -108 362 309 144 0 chr3 78454721 78454922 -139582236 + MIR SINE MIR 31 260 -2 1468 256 45 53 chr3 78455196 78455642 -139581516 + L2 LINE L2 2711 3151 -162 2011 118 11 0 chr3 78455642 78455929 -139581229 - AluSx SINE Alu -22 290 1 1468 256 45 53 chr3 78455929 78456091 -139581067 + L2 LINE L2 3151 3313 0 426 278 83 75 chr3 78456157 78456249 -139580909 - MIR SINE MIR -6 256 166 1941 124 3 0 chr3 78456249 78456532 -139580626 - AluSg SINE Alu -26 284 1 426 278 83 75 chr3 78456532 78456552 -139580606 - MIR SINE MIR -96 166 148 1965 118 0 0 chr3 78456552 78456861 -139580297 - AluSg SINE Alu 0 309 1 1967 122 0 30 chr3 78456863 78457022 -139580136 - AluSx SINE Alu -17 295 148 2201 103 10 10 chr3 78457022 78457333 -139579825 - AluSx SINE Alu -1 311 1 1967 122 0 30 chr3 78457333 78457477 -139579681 - AluSx SINE Alu -164 148 1 426 278 83 75 chr3 78457477 78457610 -139579548 - MIR SINE MIR -114 148 3 307 253 91 40 chr3 78457649 78457748 -139579410 + L1ME4a LINE L1 6018 6121 0 960 211 43 9 chr3 78458363 78458465 -139578693 + L1MC4 LINE L1 6258 6225 -134 243 0 0 0 chr3 78458465 78458492 -139578666 + (TG)n Simple_repeat Simple_repeat 2 28 0 960 211 43 9 chr3 78458492 78458633 -139578525 + L1MC4 LINE L1 6224 6359 0 1876 136 14 0 chr3 78459681 78459968 -139577190 - AluJb SINE Alu -21 291 1 591 193 48 57 chr3 78460422 78460688 -139576470 + MER46C DNA MER2_type 33 334 -4 2462 141 37 48 chr3 78461551 78461944 -139575214 + MSTB2 LTR MaLR 1 390 -67 2332 74 0 10 chr3 78461944 78462255 -139574903 - AluY SINE Alu -2 309 2 2462 141 37 48 chr3 78462255 78462323 -139574835 + MSTB2 LTR MaLR 390 457 0 463 257 142 60 chr3 78462452 78462575 -139574583 + Charlie8 DNA MER1_type 1 112 -229 1894 123 0 43 chr3 78462575 78462903 -139574255 - AluSx SINE Alu 0 312 1 463 257 142 60 chr3 78462903 78462997 -139574161 + Charlie8 DNA MER1_type 112 236 -105 558 157 0 0 chr3 78463303 78463386 -139573772 + AluJ/FLAM SINE Alu 2 84 -228 229 179 0 0 chr3 78463392 78463431 -139573727 - MER46A DNA MER2_type -145 91 53 1410 162 0 84 chr3 78463431 78463728 -139573430 + AluJb SINE Alu 1 272 -40 229 348 18 18 chr3 78463734 78463846 -139573312 - L1M4 LINE L1 -2020 4126 4015 248 208 28 28 chr3 78463871 78463943 -139573215 - L1MC5 LINE L1 -51 7910 7839 1284 182 8 23 chr3 78463984 78464248 -139572910 - AluJo SINE Alu -10 302 43 1603 150 7 26 chr3 78464417 78464690 -139572468 + AluJo SINE Alu 1 268 -44 24 32 0 0 chr3 78464733 78464764 -139572394 + AT_rich Low_complexity Low_complexity 1 31 0 230 204 19 0 chr3 78464868 78464922 -139572236 + T-rich Low_complexity Low_complexity 2 56 0 1579 149 18 4 chr3 78464970 78465245 -139571913 - AluJo SINE Alu -33 279 1 261 323 5 108 chr3 78465581 78465621 -139571537 - L2 LINE L2 -5 3267 3225 1870 127 3 3 chr3 78465621 78465905 -139571253 + AluSq SINE Alu 1 284 -29 357 24 0 0 chr3 78465908 78465950 -139571208 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 261 323 5 108 chr3 78465950 78466091 -139571067 - L2 LINE L2 -49 3223 3101 575 113 0 52 chr3 78466196 78466293 -139570865 + AluSg/x SINE Alu 217 308 -2 2262 76 7 3 chr3 78466519 78466820 -139570338 - AluSc SINE Alu -7 302 1 730 242 6 0 chr3 78466917 78467099 -139570059 + FAM SINE Alu 1 47 0 21 0 0 0 chr3 78467144 78467165 -139569993 + AT_rich Low_complexity Low_complexity 1 21 0 610 260 57 5 chr3 78467232 78467424 -139569734 - L2 LINE L2 0 3313 3112 1080 185 15 10 chr3 78467586 78467786 -139569372 - MER58A DNA MER1_type -23 201 1 222 300 140 10 chr3 78467790 78467890 -139569268 - L2 LINE L2 -499 2815 2703 23 0 0 0 chr3 78468045 78468068 -139569090 + AT_rich Low_complexity Low_complexity 1 23 0 214 316 133 76 chr3 78468235 78468671 -139568487 - L2 LINE L2 -901 2413 1953 778 269 124 106 chr3 78468674 78468990 -139568168 + HAL1 LINE L1 71 380 -2127 1740 171 23 0 chr3 78468990 78469295 -139567863 - AluJb SINE Alu 0 312 1 778 269 124 106 chr3 78469295 78469624 -139567534 + HAL1 LINE L1 380 737 -1770 1755 140 0 4 chr3 78469624 78469902 -139567256 + AluJb SINE Alu 33 309 -3 778 269 124 106 chr3 78469902 78470083 -139567075 + HAL1 LINE L1 737 913 -1594 2288 77 10 0 chr3 78470328 78470626 -139566532 - AluSp SINE Alu -12 301 1 190 0 0 62 chr3 78470632 78470664 -139566494 + (TTTTG)n Simple_repeat Simple_repeat 5 34 0 2073 111 3 3 chr3 78470669 78470976 -139566182 - AluSx SINE Alu -5 307 1 207 69 0 0 chr3 78470979 78471008 -139566150 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2353 88 0 0 chr3 78471029 78471335 -139565823 - AluSg SINE Alu 0 310 5 2126 96 17 0 chr3 78471364 78471656 -139565502 - AluSx SINE Alu -15 297 1 598 233 61 81 chr3 78471684 78472079 -139565079 + HAL1 LINE L1 1009 1395 -1112 * 1217 181 106 4 chr3 78472073 78472338 -139564820 + L1MB5 LINE L1 5883 6174 0 327 198 70 12 chr3 78472347 78472433 -139564725 + HAL1 LINE L1 1372 1462 -1045 422 265 33 83 chr3 78472445 78472493 -139564665 - MLT1I LTR MaLR -6 403 354 1896 98 87 0 chr3 78472493 78472769 -139564389 - AluSp SINE Alu -13 300 1 422 265 33 83 chr3 78472769 78472901 -139564257 - MLT1I LTR MaLR -55 354 232 861 233 76 0 chr3 78473160 78473370 -139563788 + HAL1 LINE L1 1521 1746 -761 319 263 127 24 chr3 78473386 78473599 -139563559 + HAL1 LINE L1 1924 2158 -349 2130 92 28 0 chr3 78473600 78473884 -139563274 + AluSc SINE Alu 1 292 -17 336 196 140 14 chr3 78473964 78474107 -139563051 + HAL1 LINE L1 2276 2436 -71 2156 87 40 0 chr3 78474143 78474441 -139562717 - AluY SINE Alu -1 310 1 214 281 79 62 chr3 78474452 78474630 -139562528 - L2 LINE L2 -1313 2001 1821 451 176 112 0 chr3 78476617 78476742 -139560416 - L1MA4 LINE L1 -1 6299 6161 321 297 46 42 chr3 78476769 78476835 -139560323 + L1ME LINE L1 5584 5648 -473 2117 100 3 10 chr3 78476835 78477136 -139560022 - AluSq SINE Alu -14 299 1 321 297 46 42 chr3 78477136 78477308 -139559850 + L1ME LINE L1 5648 5823 -298 366 269 51 0 chr3 78477710 78477788 -139559370 + MIR SINE MIR 64 145 -63 781 174 0 0 chr3 78477922 78478043 -139559115 + FLAM_C SINE Alu 1 121 -12 312 27 0 0 chr3 78478043 78478080 -139559078 + (CA)n Simple_repeat Simple_repeat 2 38 0 2071 92 0 0 chr3 78478087 78478368 -139558790 - AluY SINE Alu -6 305 25 365 234 0 0 chr3 78478424 78478488 -139558670 - L2 LINE L2 -27 3286 3223 1132 153 49 27 chr3 78478490 78478713 -139558445 + AluJo SINE Alu 85 312 0 396 310 42 52 chr3 78479373 78479660 -139557498 - L1ME4a LINE L1 -3 6118 5835 906 123 23 0 chr3 78480269 78480399 -139556759 + FLAM_C SINE Alu 1 133 0 189 74 0 0 chr3 78480585 78480612 -139556546 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 241 79 53 0 chr3 78480731 78480769 -139556389 - Alu SINE Alu -249 51 12 258 297 54 0 chr3 78480778 78480889 -139556269 - L1MC4 LINE L1 -135 7907 7791 595 224 61 112 chr3 78480903 78481215 -139555943 - L1MC4 LINE L1 -226 7816 7521 346 241 13 0 chr3 78481247 78481326 -139555832 - MER5A DNA MER1_type -83 106 27 667 276 42 51 chr3 78481332 78481644 -139555514 - L1MC4 LINE L1 -505 7537 7229 449 124 75 161 chr3 78481949 78482135 -139555023 - MER53 DNA DNA -3 186 17 2269 95 0 0 chr3 78482934 78483239 -139553919 - AluSc SINE Alu -4 305 1 193 294 76 0 chr3 78483723 78483815 -139553343 + MIR SINE MIR 63 161 -101 273 307 80 29 chr3 78484499 78484636 -139552522 - MER5B DNA MER1_type -27 151 8 1974 130 0 3 chr3 78484797 78485098 -139552060 - AluSq SINE Alu -13 300 1 252 345 36 0 chr3 78485336 78485446 -139551712 - MARNA DNA Mariner -229 357 244 262 313 181 12 chr3 78485868 78486034 -139551124 - MIR SINE MIR -34 228 35 496 185 0 0 chr3 78486187 78486268 -139550890 - AluJb SINE Alu -105 207 127 1990 117 7 7 chr3 78486373 78486672 -139550486 - AluY SINE Alu -12 299 1 690 203 49 0 chr3 78487166 78487309 -139549849 - MER3 DNA MER1_type -55 154 5 2492 94 50 16 chr3 78487312 78487675 -139549483 - THE1C LTR MaLR 0 375 1 1030 179 36 58 chr3 78487711 78487895 -139549263 + MER58A DNA MER1_type 5 185 -2235 1948 146 3 0 chr3 78487895 78488190 -139548968 + AluSx SINE Alu 1 296 -16 1030 179 36 58 chr3 78488190 78488229 -139548929 + MER58A DNA MER1_type 185 223 -1 184 218 13 90 chr3 78488234 78488312 -139548846 - L2 LINE L2 -554 2760 2689 388 58 58 0 chr3 78488452 78488504 -139548654 - THE1C LTR MaLR -320 55 1 1001 194 143 18 chr3 78488616 78488975 -139548183 - Charlie4a DNA MER1_type -3 505 105 1991 113 0 3 chr3 78488984 78489311 -139547847 - AluSg SINE Alu 0 326 1 1932 113 39 0 chr3 78489513 78489795 -139547363 - AluSg SINE Alu -13 297 5 1691 168 14 14 chr3 78489893 78490190 -139546968 - AluJo SINE Alu -15 297 1 203 228 13 38 chr3 78490566 78490645 -139546513 + (TTGG)n Simple_repeat Simple_repeat 2 78 0 2073 93 10 3 chr3 78490709 78490999 -139546159 - AluSp SINE Alu -21 292 1 440 224 86 46 chr3 78491901 78492053 -139545105 - MER103 DNA DNA -7 159 2 500 284 90 0 chr3 78492829 78492984 -139544174 + MIR SINE MIR 28 196 -66 1265 129 29 33 chr3 78493145 78493265 -139543893 + AluJo SINE Alu 1 121 -191 2239 121 3 0 chr3 78493265 78493563 -139543595 - AluSx SINE Alu -13 299 1 1265 129 29 33 chr3 78493563 78493652 -139543506 + AluJo SINE Alu 121 209 -103 330 62 0 0 chr3 78493652 78493700 -139543458 + Alu SINE Alu 255 302 0 207 0 0 0 chr3 78493706 78493729 -139543429 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 1596 142 16 92 chr3 78494345 78494662 -139542496 + AluJb SINE Alu 5 297 -15 25 0 0 0 chr3 78494675 78494700 -139542458 + AT_rich Low_complexity Low_complexity 1 25 0 2259 101 10 0 chr3 78494705 78495003 -139542155 + AluSx SINE Alu 1 301 -11 263 255 62 41 chr3 78495908 78496053 -139541105 - MIR SINE MIR -82 180 33 27 29 0 0 chr3 78496772 78496806 -139540352 + AT_rich Low_complexity Low_complexity 1 34 0 2284 100 0 0 chr3 78497047 78497336 -139539822 - AluSq SINE Alu -24 289 1 595 290 10 21 chr3 78497712 78497905 -139539253 - MIR SINE MIR -48 214 24 181 243 0 0 chr3 78498268 78498305 -139538853 + MIR SINE MIR 214 250 -12 1364 194 11 28 chr3 78498330 78498613 -139538545 + AluJo SINE Alu 1 278 -34 32 26 0 0 chr3 78499049 78499088 -139538070 + GC_rich Low_complexity Low_complexity 1 39 0 2457 65 0 56 chr3 78499372 78499696 -139537462 - AluY SINE Alu -5 306 1 190 307 80 107 chr3 78500105 78500255 -139536903 + L2 LINE L2 2946 3091 -181 2111 140 0 10 chr3 78500285 78500599 -139536559 - AluSx SINE Alu -1 311 1 654 201 104 0 chr3 78501191 78501335 -139535823 - FRAM SINE Alu -21 155 1 855 229 0 0 chr3 78501349 78501519 -139535639 - FAM SINE Alu -5 170 1 692 248 96 0 chr3 78501780 78501990 -139535168 + MIR SINE MIR 25 257 -5 1104 178 0 5 chr3 78502063 78502277 -139534881 - AluSg/x SINE Alu 0 305 93 1882 120 4 4 chr3 78502377 78502635 -139534523 + AluSx SINE Alu 46 303 -9 467 257 102 35 chr3 78502675 78502990 -139534168 - L1MC4a LINE L1 -1666 6142 5807 862 117 193 14 chr3 78503140 78503285 -139533873 - AluJo SINE Alu -22 290 120 233 152 0 0 chr3 78503325 78503371 -139533787 + L1MC4 LINE L1 6658 6703 -1339 1726 186 3 0 chr3 78503424 78503715 -139533443 + AluJo SINE Alu 3 294 -18 499 225 8 0 chr3 78503715 78503844 -139533314 - L1ME3A LINE L1 -11 6159 6030 1902 157 7 0 chr3 78503920 78504214 -139532944 + AluJo SINE Alu 1 296 -16 231 194 0 32 chr3 78504366 78504428 -139532730 + A-rich Low_complexity Low_complexity 5 64 0 571 247 106 38 chr3 78504494 78504729 -139532429 + MIR SINE MIR 12 262 0 603 128 0 20 chr3 78504824 78504926 -139532232 - AluJb SINE Alu 0 312 213 2286 92 10 7 chr3 78505270 78505573 -139531585 - AluSq SINE Alu -9 304 1 1306 39 0 0 chr3 78505852 78506008 -139531150 + L1PA3 LINE L1 5997 6152 -3 230 208 0 0 chr3 78506039 78506087 -139531071 + L1ME3A LINE L1 5031 5078 -1068 873 167 117 6 chr3 78506187 78506349 -139530809 + FAM SINE Alu 1 44 -5 295 256 145 30 chr3 78506436 78506670 -139530488 + L1ME3A LINE L1 5295 5555 -615 * 1168 230 29 14 chr3 78506653 78507305 -139529853 - L1M4 LINE L1 -2275 3871 3074 1356 169 0 17 chr3 78507308 78507539 -139529619 - AluJo SINE Alu 0 312 86 858 294 65 3 chr3 78507603 78507971 -139529187 + L1ME3A LINE L1 5548 5938 -232 726 143 0 0 chr3 78507974 78508079 -139529079 + FLAM_C SINE Alu 1 105 -38 1250 158 4 71 chr3 78508180 78508434 -139528724 - AluJo SINE Alu -75 237 1 2255 45 45 3 chr3 78508484 78508770 -139528388 + AluY SINE Alu 2 299 -12 2078 117 0 4 chr3 78509001 78509315 -139527843 + AluSg SINE Alu 1 313 0 28 29 0 0 chr3 78510016 78510051 -139527107 + AT_rich Low_complexity Low_complexity 1 35 0 696 134 13 101 chr3 78510320 78510535 -139526623 - MER6 DNA MER2_type 0 865 -64 609 329 34 52 chr3 78510655 78510885 -139526273 + LTR67 LTR ERVL 6 239 -318 2466 75 3 7 chr3 78510885 78511193 -139525965 + AluSp SINE Alu 1 307 -6 609 329 34 52 chr3 78511193 78511522 -139525636 + LTR67 LTR ERVL 239 555 -2 233 227 0 0 chr3 78512134 78512178 -139524980 + AluJ/monomer SINE Alu 1 44 -258 883 159 37 86 chr3 78512346 78512591 -139524567 + MER46A DNA MER2_type 1 233 -3 787 270 72 9 chr3 78512637 78512859 -139524299 - MIR SINE MIR -2 260 25 247 382 55 24 chr3 78512962 78513127 -139524031 + L2 LINE L2 2891 3060 -212 813 133 16 8 chr3 78513813 78513941 -139523217 + AluJo/FLAM SINE Alu 1 129 -173 2495 65 0 3 chr3 78513944 78514252 -139522906 + AluY SINE Alu 1 307 -4 823 143 152 9 chr3 78514254 78514392 -139522766 - L1MB8 LINE L1 -11 6167 6050 1795 177 23 60 chr3 78514392 78514822 -139522336 - MLT2D LTR ERVL 0 414 1 823 143 152 9 chr3 78514822 78514900 -139522258 - L1MB8 LINE L1 -128 6050 5920 668 143 0 0 chr3 78514902 78515000 -139522158 - AluJ/FLAM SINE Alu -214 98 1 1753 116 0 45 chr3 78516121 78516389 -139520769 + AluSx SINE Alu 40 295 -17 695 254 111 38 chr3 78518311 78518708 -139518450 + L1M4 LINE L1 2 427 -6115 4278 222 34 6 chr3 78518834 78519962 -139517196 + L1M4 LINE L1 4374 5532 -1112 1104 214 115 83 chr3 78519965 78520332 -139516826 - L1M4 LINE L1 -4948 1594 1205 6772 19 1 1 chr3 78520332 78521119 -139516039 + L1PA4 LINE L1 5366 6152 -3 1104 214 115 83 chr3 78521119 78521256 -139515902 - L1M4 LINE L1 -5337 1205 1074 185 91 0 30 chr3 78521362 78521395 -139515763 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 1835 147 37 3 chr3 78521480 78521821 -139515337 + AluSx SINE Alu 1 351 0 533 305 138 9 chr3 78522001 78522211 -139514947 - MIR SINE MIR -3 259 23 23 0 0 0 chr3 78522640 78522663 -139514495 + AT_rich Low_complexity Low_complexity 1 23 0 243 299 46 11 chr3 78524245 78524332 -139512826 - MIR SINE MIR -56 152 63 432 186 96 11 chr3 78524681 78524819 -139512339 + L1ME1 LINE L1 6034 6184 0 1361 124 19 9 chr3 78524832 78525042 -139512116 + AluSx SINE Alu 1 212 -100 327 107 54 0 chr3 78525042 78525098 -139512060 + AluSg/x SINE Alu 76 134 -166 2224 95 13 13 chr3 78525098 78525231 -139511927 + AluSx SINE Alu 1 133 -179 1437 109 198 12 chr3 78525231 78525479 -139511679 + AluSg1 SINE Alu 1 294 -15 2224 95 13 13 chr3 78525479 78525651 -139511507 + AluSx SINE Alu 132 306 -6 1504 163 87 3 chr3 78525847 78526135 -139511023 + AluJo SINE Alu 1 312 0 215 330 76 30 chr3 78526199 78526396 -139510762 + L2 LINE L2 2813 3018 -254 2131 105 0 7 chr3 78527418 78527727 -139509431 + AluY SINE Alu 1 307 0 368 332 150 21 chr3 78527758 78528040 -139509118 - L2 LINE L2 -19 3253 2853 833 147 16 0 chr3 78528454 78528583 -139508575 + AluJo SINE Alu 5 135 -177 259 213 83 115 chr3 78529391 78529644 -139507514 - L1M4 LINE L1 -2163 3983 3739 1153 141 43 112 chr3 78529654 78529930 -139507228 - AluJo SINE Alu -55 257 1 2170 131 0 0 chr3 78529938 78530243 -139506915 - AluJb SINE Alu -2 310 6 627 306 112 50 chr3 78530253 78530960 -139506198 - L1M4 LINE L1 -2395 3751 3001 289 136 34 0 chr3 78531024 78531083 -139506075 - L1M4 LINE L1 -3227 2919 2859 2233 90 10 0 chr3 78531371 78531659 -139505499 + AluSc SINE Alu 1 291 -18 290 250 11 33 chr3 78531792 78531884 -139505274 - MER103 DNA DNA -12 154 65 216 163 0 0 chr3 78532386 78532429 -139504729 + (CACCAT)n Simple_repeat Simple_repeat 1 43 0 261 288 0 12 chr3 78532724 78532804 -139504354 + MLT1L LTR MaLR 1 79 -536 688 290 40 53 chr3 78532947 78533326 -139503832 + MLT1L LTR MaLR 220 593 -22 2465 162 52 15 chr3 78533911 78534435 -139502723 + L1MB7 LINE L1 5550 6092 -92 1859 111 96 0 chr3 78534780 78535060 -139502098 + AluSx SINE Alu 1 307 -5 220 350 30 10 chr3 78535062 78535162 -139501996 - MIR SINE MIR -108 154 53 22 0 0 0 chr3 78535604 78535626 -139501532 + AT_rich Low_complexity Low_complexity 1 22 0 242 254 16 0 chr3 78535718 78535781 -139501377 - MER112 DNA MER1_type -6 254 191 678 239 30 34 chr3 78535886 78536120 -139501038 - L1M4 LINE L1 -5494 786 554 605 271 88 50 chr3 78536211 78536554 -139500604 - L1M4 LINE L1 -5999 385 30 291 54 0 0 chr3 78537004 78537041 -139500117 + (GGA)n Simple_repeat Simple_repeat 3 39 0 22 0 0 0 chr3 78537387 78537409 -139499749 + AT_rich Low_complexity Low_complexity 1 22 0 2819 97 18 53 chr3 78537948 78538403 -139498755 - MER52-int LTR ERV1 -4888 2203 1765 1900 148 13 0 chr3 78538903 78539201 -139497957 + AluJo SINE Alu 1 302 -10 545 246 46 77 chr3 78540357 78540499 -139496659 - MIR SINE MIR 0 262 126 2387 69 3 0 chr3 78540499 78540813 -139496345 + AluSp SINE Alu 1 313 0 545 246 46 77 chr3 78540813 78540865 -139496293 - MIR SINE MIR -136 126 74 213 356 106 10 chr3 78540974 78541078 -139496080 - MIR SINE MIR -64 144 31 273 305 49 0 chr3 78541209 78541291 -139495867 - MIR SINE MIR -21 241 156 25 0 0 0 chr3 78541453 78541478 -139495680 + AT_rich Low_complexity Low_complexity 1 25 0 208 191 0 21 chr3 78541617 78541664 -139495494 + (TAA)n Simple_repeat Simple_repeat 3 48 0 2097 134 0 0 chr3 78542511 78542827 -139494331 + AluSx SINE Alu 1 316 0 686 267 53 24 chr3 78542832 78543038 -139494120 + MIR SINE MIR 51 262 0 749 146 8 16 chr3 78543188 78543311 -139493847 + FLAM_C SINE Alu 6 127 -16 22 35 0 0 chr3 78543362 78543391 -139493767 + AT_rich Low_complexity Low_complexity 1 29 0 1918 178 34 0 chr3 78543610 78543936 -139493222 + MER1B DNA MER1_type 1 337 0 1532 170 40 4 chr3 78543963 78544120 -139493038 - AluJb SINE Alu -25 287 114 216 0 0 0 chr3 78544120 78544144 -139493014 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1532 170 40 4 chr3 78544144 78544263 -139492895 - AluJb SINE Alu -198 114 1 1776 196 78 63 chr3 78544581 78544917 -139492241 + L1MB7 LINE L1 5603 5953 -231 1900 127 56 14 chr3 78544917 78545201 -139491957 + AluSq SINE Alu 1 296 -17 1776 196 78 63 chr3 78545201 78545437 -139491721 + L1MB7 LINE L1 5953 6184 0 644 237 94 45 chr3 78545662 78545928 -139491230 + L1ME4a LINE L1 5549 5827 -294 2267 103 0 0 chr3 78547023 78547315 -139489843 + AluSx SINE Alu 1 292 -20 823 165 0 0 chr3 78547432 78547559 -139489599 - FRAM SINE Alu -16 160 34 28 0 0 0 chr3 78548469 78548497 -139488661 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 78548657 78548678 -139488480 + AT_rich Low_complexity Low_complexity 1 21 0 788 218 52 39 chr3 78549361 78549590 -139487568 - MIR SINE MIR 0 262 31 329 266 57 40 chr3 78549652 78549776 -139487382 - MIR3 SINE MIR -49 159 34 2452 77 3 0 chr3 78549984 78550281 -139486877 - AluSp SINE Alu -15 298 1 1823 141 33 46 chr3 78550281 78550586 -139486572 - AluJo SINE Alu -11 301 1 344 277 87 31 chr3 78550719 78550914 -139486244 - L1ME LINE L1 -343 5778 5573 683 248 182 5 chr3 78550916 78551114 -139486044 - MIR SINE MIR -29 233 1 3760 169 71 61 chr3 78551381 78551550 -139485608 + L1MB7 LINE L1 5060 5226 -958 1934 98 29 4 chr3 78551550 78551825 -139485333 + L1MB4 LINE L1 5896 6177 -3 3760 169 71 61 chr3 78551825 78551919 -139485239 + L1MB7 LINE L1 5226 5318 -866 2263 108 0 3 chr3 78551919 78552226 -139484932 - AluSg SINE Alu -4 306 1 3760 169 71 61 chr3 78552226 78553022 -139484136 + L1MB7 LINE L1 5318 6131 -53 1406 209 0 36 chr3 78553400 78553701 -139483457 - AluJb SINE Alu -17 295 6 219 171 0 0 chr3 78554001 78554036 -139483122 + L2 LINE L2 3189 3223 -90 491 170 7 183 chr3 78554261 78554335 -139482823 + FLAM_A SINE Alu 4 39 -263 1670 160 34 17 chr3 78554335 78554628 -139482530 - AluJb SINE Alu -14 298 1 491 170 7 183 chr3 78554628 78554706 -139482452 + FLAM_A SINE Alu 39 129 -173 23 0 0 0 chr3 78554774 78554797 -139482361 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 78555739 78555762 -139481396 + AT_rich Low_complexity Low_complexity 1 23 0 2092 115 14 14 chr3 78556111 78556406 -139480752 - AluSx SINE Alu -13 299 5 2363 99 0 6 chr3 78557346 78557660 -139479498 + AluSx SINE Alu 1 312 0 3339 99 6 28 chr3 78557819 78558315 -139478843 + MER31A LTR ERV1 1 485 0 251 338 110 32 chr3 78558593 78559067 -139478091 + L2 LINE L2 1785 2295 -1019 228 323 147 56 chr3 78559248 78559697 -139477461 + L2 LINE L2 2804 3293 -20 2338 89 3 0 chr3 78559706 78559997 -139477161 + AluSx SINE Alu 1 292 -20 2538 53 0 10 chr3 78560446 78560750 -139476408 + AluY SINE Alu 1 301 -10 1225 145 0 0 chr3 78560750 78560929 -139476229 + AluSg/x SINE Alu 126 304 -8 814 264 70 38 chr3 78560999 78561349 -139475809 + MLT1I LTR MaLR 66 401 -8 1762 154 102 54 chr3 78562388 78562759 -139474399 - MSTD LTR MaLR -7 389 1 2912 242 119 65 chr3 78562765 78563754 -139473404 - MSTD-int LTR MaLR -7 1728 686 545 170 5 2 chr3 78563925 78564144 -139473014 + AluJ SINE Alu 1 268 -44 455 266 32 45 chr3 78564502 78564571 -139472587 + L1ME LINE L1 5465 5533 -588 1638 168 81 19 chr3 78564571 78564892 -139472266 + MER2 DNA MER2_type 4 344 0 455 266 32 45 chr3 78564892 78564976 -139472182 + L1ME LINE L1 5533 5616 -505 2069 126 20 0 chr3 78564976 78565270 -139471888 + AluSx SINE Alu 1 300 -12 5225 169 33 39 chr3 78565270 78567300 -139469858 + L1MB3 LINE L1 4169 6180 -3 2097 248 51 9 chr3 78567309 78567877 -139469281 - L2 LINE L2 -1018 2296 1705 6405 184 186 13 chr3 78567893 78569309 -139467849 - MER52A LTR ERV1 0 1755 94 11027 111 30 5 chr3 78569342 78571038 -139466120 + L1PA8 LINE L1 2383 4120 -2026 7110 75 10 12 chr3 78571040 78571629 -139465529 + L1PA8 LINE L1 5191 5780 -392 2039 125 0 7 chr3 78571629 78571934 -139465224 + AluSx SINE Alu 4 306 0 7110 75 10 12 chr3 78571934 78572326 -139464832 + L1PA8 LINE L1 5780 6171 -1 341 306 136 30 chr3 78572373 78572608 -139464550 - L2 LINE L2 -189 3083 2824 1986 156 3 3 chr3 78573602 78573903 -139463255 - AluJb SINE Alu -11 301 1 2261 98 7 0 chr3 78575417 78575713 -139461445 + AluSq SINE Alu 1 298 -15 320 278 119 0 chr3 78579555 78579681 -139457477 + MIR SINE MIR 63 203 -59 2589 51 3 3 chr3 78579704 78580016 -139457142 + AluSp SINE Alu 1 312 -1 300 343 110 24 chr3 78580037 78580291 -139456867 - L2 LINE L2 -2 3270 2995 216 167 21 0 chr3 78580390 78580438 -139456720 + L2 LINE L2 3264 3312 -1 218 265 44 29 chr3 78580547 78580615 -139456543 - L2 LINE L2 -1 3312 3244 225 298 64 11 chr3 78580760 78580854 -139456304 - L2 LINE L2 0 3313 3215 203 337 46 71 chr3 78580938 78581134 -139456024 - L2 LINE L2 -288 3025 2835 186 340 0 0 chr3 78581270 78581317 -139455841 + MIR SINE MIR 95 141 -67 21 0 0 0 chr3 78581351 78581372 -139455786 + AT_rich Low_complexity Low_complexity 1 21 0 223 321 9 38 chr3 78581406 78581512 -139455646 + MIR SINE MIR 160 262 0 22 0 0 0 chr3 78581902 78581924 -139455234 + AT_rich Low_complexity Low_complexity 1 22 0 305 258 56 22 chr3 78582617 78582706 -139454452 - MIR3 SINE MIR -8 200 109 211 211 111 67 chr3 78582725 78582815 -139454343 - MIR SINE MIR -56 206 113 1299 177 19 68 chr3 78582929 78583251 -139453907 - AluJb SINE Alu -6 306 1 245 203 112 98 chr3 78583259 78583402 -139453756 - L1ME4a LINE L1 -3 6118 5974 2138 140 0 6 chr3 78583911 78584225 -139452933 + AluSx SINE Alu 1 312 0 1833 144 3 38 chr3 78584547 78584860 -139452298 - AluSx SINE Alu -10 302 1 598 233 147 0 chr3 78584892 78585042 -139452116 + MER45A DNA AcHobo 1 172 -6 1368 180 152 0 chr3 78585044 78585300 -139451858 + AluSq SINE Alu 2 296 -7 317 231 224 7 chr3 78585668 78585815 -139451343 - L1MC4 LINE L1 0 8042 7864 1974 112 10 41 chr3 78585882 78586176 -139450982 - AluJb SINE Alu -23 289 5 273 39 39 19 chr3 78586189 78586241 -139450917 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 6269 67 7 58 chr3 78586244 78587233 -139449925 - SVA Other Other -9 1377 439 1179 85 0 57 chr3 78587258 78587504 -139449654 - SVA Other Other -520 866 635 2044 145 3 0 chr3 78587689 78588000 -139449158 - AluSx SINE Alu 0 312 1 2141 115 0 7 chr3 78588317 78588612 -139448546 - AluSx SINE Alu -19 293 1 2369 87 3 3 chr3 78589533 78589832 -139447326 - AluSp SINE Alu -14 299 1 2338 94 0 0 chr3 78589949 78590246 -139446912 - AluSp SINE Alu -16 297 1 354 240 31 31 chr3 78592905 78593001 -139444157 + MIR3 SINE MIR 14 109 -99 199 388 0 24 chr3 78593089 78593174 -139443984 + MIR3 SINE MIR 116 198 -10 2252 97 3 0 chr3 78593177 78593465 -139443693 - AluSp SINE Alu -16 297 9 2024 110 57 0 chr3 78594181 78594462 -139442696 + AluSg SINE Alu 1 297 -13 21 0 0 0 chr3 78594445 78594466 -139442692 + AT_rich Low_complexity Low_complexity 1 21 0 2123 129 3 0 chr3 78594467 78594761 -139442397 + AluSp SINE Alu 1 295 -18 270 136 0 62 chr3 78594763 78594844 -139442314 + (TA)n Simple_repeat Simple_repeat 1 76 0 1052 168 69 10 chr3 78594925 78595128 -139442030 - AluJb SINE Alu -1 311 97 1915 181 0 3 chr3 78595371 78595674 -139441484 - AluJb SINE Alu -10 302 1 33 73 0 0 chr3 78595979 78596047 -139441111 + AT_rich Low_complexity Low_complexity 1 68 0 28 19 0 56 chr3 78596425 78596479 -139440679 + AT_rich Low_complexity Low_complexity 1 51 0 234 0 0 0 chr3 78597400 78597426 -139439732 + (T)n Simple_repeat Simple_repeat 1 26 0 676 319 82 7 chr3 78597506 78597785 -139439373 + L2 LINE L2 3014 3313 0 2083 124 28 0 chr3 78598868 78599159 -139437999 + AluSg SINE Alu 1 299 -11 21 0 0 0 chr3 78599417 78599438 -139437720 + AT_rich Low_complexity Low_complexity 1 21 0 2361 99 3 0 chr3 78599438 78599741 -139437417 + AluSp SINE Alu 1 304 -9 2202 114 3 0 chr3 78599831 78600129 -139437029 - AluSx SINE Alu -13 299 1 336 315 28 56 chr3 78601070 78601283 -139435875 - MIR SINE MIR -22 240 34 26 30 0 0 chr3 78601676 78601709 -139435449 + AT_rich Low_complexity Low_complexity 1 33 0 232 163 41 0 chr3 78601710 78601759 -139435399 + L1MC4 LINE L1 6985 7035 -1007 2323 91 0 0 chr3 78602023 78602321 -139434837 + AluY SINE Alu 1 298 -13 243 0 0 0 chr3 78602648 78602675 -139434483 + (TA)n Simple_repeat Simple_repeat 1 27 0 2244 97 0 25 chr3 78602732 78603052 -139434106 + AluSx SINE Alu 1 312 0 189 0 0 0 chr3 78603277 78603298 -139433860 + (T)n Simple_repeat Simple_repeat 1 21 0 531 175 19 11 chr3 78603407 78603561 -139433597 - MER20 DNA MER1_type -2 217 1 871 253 114 19 chr3 78603603 78603767 -139433391 + L1MC4 LINE L1 6390 6537 -1505 2125 139 3 0 chr3 78603767 78604069 -139433089 + AluSx SINE Alu 1 303 -9 871 253 114 19 chr3 78604069 78604264 -139432894 + L1MC4 LINE L1 6537 6783 -1259 1349 127 0 24 chr3 78604264 78604476 -139432682 - AluJo SINE Alu -17 295 89 646 166 24 83 chr3 78604476 78604645 -139432513 - MER20 DNA MER1_type -36 183 25 512 105 92 0 chr3 78604645 78604721 -139432437 - AluJo SINE Alu -229 83 1 596 224 81 0 chr3 78604722 78604896 -139432262 + L1MC4 LINE L1 7688 7875 -167 1174 200 4 8 chr3 78604898 78605133 -139432025 - AluJb SINE Alu -4 308 75 368 195 204 26 chr3 78606423 78606536 -139430622 + MER94 DNA DNA 1 133 -1 304 322 196 30 chr3 78606617 78606887 -139430271 + L2 LINE L2 2428 2742 -572 276 289 40 0 chr3 78607129 78607278 -139429880 - L1MC5 LINE L1 -270 7691 7537 466 142 13 134 chr3 78607299 78607531 -139429627 - AluSg/x SINE Alu -15 295 92 933 121 0 0 chr3 78607717 78607841 -139429317 - AluSq/x SINE Alu -188 124 1 233 109 109 0 chr3 78607841 78607896 -139429262 - Tigger3(Golem) DNA MER2_type -2766 263 203 255 170 0 0 chr3 78607896 78607943 -139429215 + (TATG)n Simple_repeat Simple_repeat 2 48 0 2131 114 3 10 chr3 78607944 78608243 -139428915 - AluSx SINE Alu -15 297 1 2025 91 28 63 chr3 78608246 78608425 -139428733 + Tigger3(Golem) DNA MER2_type 2371 2555 -474 2445 91 0 0 chr3 78608425 78608733 -139428425 - AluSc SINE Alu -1 308 1 2025 91 28 63 chr3 78608733 78608951 -139428207 + Tigger3(Golem) DNA MER2_type 2555 2754 -275 2208 111 0 3 chr3 78608974 78609262 -139427896 - AluSx SINE Alu -25 287 1 829 183 21 62 chr3 78609262 78609502 -139427656 - L1MC5 LINE L1 -432 7529 7300 183 42 0 0 chr3 78609605 78609629 -139427529 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2375 162 43 9 chr3 78609701 78610139 -139427019 + MER88 LTR ERVL 1 453 -11 1793 166 31 0 chr3 78610188 78610478 -139426680 - AluJb SINE Alu -13 299 1 195 167 0 0 chr3 78611251 78611293 -139425865 + GA-rich Low_complexity Low_complexity 2 43 0 721 145 0 97 chr3 78611300 78611445 -139425713 + FLAM_A SINE Alu 1 131 -2 473 314 52 21 chr3 78612042 78612233 -139424925 - MIR SINE MIR -30 232 36 486 84 0 0 chr3 78612487 78612558 -139424600 + L1MA2 LINE L1 6228 6298 -6 2319 108 13 0 chr3 78613290 78613597 -139423561 - AluSp SINE Alu -2 311 1 1651 158 4 8 chr3 78615053 78615319 -139421839 - AluJo SINE Alu -15 297 33 494 112 22 11 chr3 78615425 78615514 -139421644 - AluSg1 SINE Alu -219 90 1 1987 119 0 31 chr3 78615534 78615827 -139421331 - AluSg SINE Alu -26 284 1 462 227 89 19 chr3 78615916 78616126 -139421032 - L1ME3A LINE L1 -233 5937 5627 511 224 0 0 chr3 78616330 78616415 -139420743 + AluJ/FLAM SINE Alu 1 85 -227 411 344 50 33 chr3 78616805 78616985 -139420173 - MIR SINE MIR -32 230 48 2361 103 0 25 chr3 78617345 78617665 -139419493 + AluSx SINE Alu 1 312 0 1716 168 37 3 chr3 78619946 78620244 -139416914 - AluJo SINE Alu -2 310 3 2333 87 3 0 chr3 78620613 78620900 -139416258 - AluSq SINE Alu -15 298 11 481 126 175 58 chr3 78620908 78621011 -139416147 - FLAM_A SINE Alu -8 134 20 1498 192 6 48 chr3 78621179 78621345 -139415813 - AluJo SINE Alu -13 299 151 2096 125 7 7 chr3 78621345 78621649 -139415509 - AluSx SINE Alu -8 304 1 1498 192 6 48 chr3 78621649 78621794 -139415364 - AluJo SINE Alu -161 151 1 2400 97 0 6 chr3 78621956 78622267 -139414891 - AluSx SINE Alu -3 309 1 2209 124 0 3 chr3 78622845 78623152 -139414006 - AluSq SINE Alu -7 306 1 1105 118 0 0 chr3 78623180 78623332 -139413826 - AluSg/x SINE Alu -24 288 137 22 0 0 0 chr3 78624178 78624200 -139412958 + AT_rich Low_complexity Low_complexity 1 22 0 498 207 80 57 chr3 78625576 78625818 -139411340 + MER33 DNA MER1_type 1 228 -2357 311 0 26 0 chr3 78625818 78625857 -139411301 + (TA)n Simple_repeat Simple_repeat 1 40 0 991 196 0 0 chr3 78625859 78626017 -139411141 - FAM SINE Alu -17 158 1 498 207 80 57 chr3 78626017 78626036 -139411122 + MER33 DNA MER1_type 228 263 -61 3154 55 2 0 chr3 78626036 78626434 -139410724 + MLT2A1 LTR ERVL 1 399 -45 533 90 87 0 chr3 78626434 78626677 -139410481 + (TA)n Simple_repeat Simple_repeat 1 264 0 435 18 0 0 chr3 78626677 78626732 -139410426 + MLT2A1 LTR ERVL 390 444 0 1710 187 0 4 chr3 78626761 78627039 -139410119 - AluJo SINE Alu -30 282 6 675 147 138 0 chr3 78627059 78627175 -139409983 - FLAM_C SINE Alu 0 133 2 258 115 0 98 chr3 78627175 78627211 -139409947 + MER33 DNA MER1_type 309 338 -2286 1928 164 7 0 chr3 78627211 78627509 -139409649 - AluJo SINE Alu -12 300 1 258 115 0 98 chr3 78627509 78627533 -139409625 + MER33 DNA MER1_type 338 363 0 21 0 0 0 chr3 78627624 78627645 -139409513 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr3 78627732 78627768 -139409390 + AT_rich Low_complexity Low_complexity 1 36 0 1961 108 3 24 chr3 78628285 78628594 -139408564 - AluSx SINE Alu 0 305 3 1525 131 44 9 chr3 78628600 78628829 -139408329 - AluJb SINE Alu -17 295 59 234 0 0 0 chr3 78629188 78629214 -139407944 + (TTTTC)n Simple_repeat Simple_repeat 2 27 0 903 163 7 0 chr3 78629218 78629365 -139407793 - AluJb SINE Alu -31 281 134 337 232 14 0 chr3 78629470 78629539 -139407619 + L2 LINE L2 3228 3297 -16 268 106 0 0 chr3 78631093 78631140 -139406018 - AluSp SINE Alu -1 302 256 1782 77 5 0 chr3 78631140 78631362 -139405796 - AluSp SINE Alu -90 223 1 1987 127 165 3 chr3 78631674 78632044 -139405114 + MSTB1 LTR MaLR 3 432 0 2476 82 0 0 chr3 78632827 78633130 -139404028 - AluSc SINE Alu -6 303 1 212 0 36 0 chr3 78633135 78633163 -139403995 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1147 91 0 13 chr3 78633167 78633321 -139403837 - AluSg/x SINE Alu -27 283 132 459 222 161 6 chr3 78635161 78635323 -139401835 + L1MC5 LINE L1 6727 6913 -1048 724 93 0 0 chr3 78635339 78635436 -139401722 + FLAM_C SINE Alu 34 130 -13 444 220 52 40 chr3 78635437 78635610 -139401548 + L1MC5 LINE L1 6912 7086 -875 1879 124 0 0 chr3 78635618 78635892 -139401266 - L1PB3 LINE L1 0 6154 5881 1252 200 4 4 chr3 78635910 78636140 -139401018 - AluJo SINE Alu -7 305 76 2023 116 17 10 chr3 78636148 78636440 -139400718 - AluSx SINE Alu -11 301 8 724 192 92 97 chr3 78636444 78636522 -139400636 + L1MC5 LINE L1 7102 7179 -782 2068 126 3 0 chr3 78636522 78636828 -139400330 - AluSp SINE Alu 0 313 1 724 192 92 97 chr3 78636828 78637139 -139400019 + L1MC5 LINE L1 7179 7489 -472 1580 118 127 51 chr3 78637909 78638223 -139398935 + MER44D DNA MER2_type 1 608 -1 274 269 15 0 chr3 78638421 78638488 -139398670 + (CATA)n Simple_repeat Simple_repeat 3 70 0 4111 130 34 21 chr3 78638488 78639248 -139397910 + Tigger3b DNA MER2_type 1 770 -461 784 176 17 80 chr3 78639249 78639425 -139397733 - AluJo SINE Alu -14 298 134 2209 113 3 0 chr3 78639425 78639727 -139397431 - AluSx SINE Alu -9 303 1 22 35 0 0 chr3 78639733 78639762 -139397396 + AT_rich Low_complexity Low_complexity 1 29 0 737 183 8 0 chr3 78639763 78639894 -139397264 - AluJo SINE Alu -170 132 1 2513 113 40 55 chr3 78639895 78640084 -139397074 + Tigger3b DNA MER2_type 767 957 -2072 2051 133 0 0 chr3 78640084 78640370 -139396788 - AluSx SINE Alu -3 309 24 2513 113 40 55 chr3 78640370 78640650 -139396508 + Tigger3b DNA MER2_type 957 1229 -3 280 250 0 14 chr3 78640653 78640725 -139396433 + (TA)n Simple_repeat Simple_repeat 1 71 0 1992 147 0 3 chr3 78640875 78641174 -139395984 - AluSx SINE Alu -14 298 1 730 104 49 0 chr3 78641370 78641533 -139395625 + (TA)n Simple_repeat Simple_repeat 2 172 0 2225 92 7 3 chr3 78641534 78641829 -139395329 - AluSp SINE Alu -17 296 1 339 265 20 10 chr3 78642742 78642840 -139394318 + MIR3 SINE MIR 91 189 -19 835 261 73 8 chr3 78642883 78643117 -139394041 - MIR SINE MIR -7 255 7 2175 100 0 3 chr3 78643280 78643569 -139393589 + AluY SINE Alu 3 290 -21 321 333 38 19 chr3 78643572 78643705 -139393453 - MIR3 SINE MIR -32 176 38 2115 122 0 38 chr3 78643705 78644024 -139393134 + AluSx SINE Alu 2 308 -4 321 333 38 19 chr3 78644024 78644049 -139393109 - MIR3 SINE MIR -170 38 15 745 281 40 16 chr3 78644244 78644497 -139392661 + MIR SINE MIR 2 260 -2 1891 141 3 7 chr3 78644554 78644877 -139392281 + AluSx SINE Alu 1 322 0 948 173 0 0 chr3 78644910 78645060 -139392098 + FRAM SINE Alu 5 154 -22 1669 194 0 7 chr3 78645303 78645597 -139391561 - AluJo SINE Alu -20 292 1 896 68 0 17 chr3 78646300 78646418 -139390740 + AluSq/x SINE Alu 1 116 -196 440 117 0 0 chr3 78646419 78646479 -139390679 + Alu SINE Alu 237 296 -14 2155 117 10 0 chr3 78646480 78646779 -139390379 + AluSp SINE Alu 1 302 -11 584 186 11 33 chr3 78646797 78646980 -139390178 + GA-rich Low_complexity Low_complexity 2 180 0 252 110 7 90 chr3 78646980 78647135 -139390023 + (GAA)n Simple_repeat Simple_repeat 3 144 0 693 183 0 32 chr3 78647152 78647338 -139389820 + GA-rich Low_complexity Low_complexity 1 180 0 2286 112 0 7 chr3 78648630 78648934 -139388224 + AluSx SINE Alu 1 302 -10 404 270 60 103 chr3 78649255 78649349 -139387809 + MIR SINE MIR 48 132 -130 2145 127 0 0 chr3 78649349 78649641 -139387517 + AluSg SINE Alu 1 292 -18 404 270 60 103 chr3 78649641 78649731 -139387427 + MIR SINE MIR 132 224 -38 203 302 70 12 chr3 78650219 78650305 -139386853 + L2 LINE L2 3173 3263 -9 268 260 221 0 chr3 78650374 78650501 -139386657 - L1ME4a LINE L1 -21 6100 5946 1767 118 4 0 chr3 78650531 78650777 -139386381 + AluSx SINE Alu 57 303 -9 275 136 0 0 chr3 78651179 78651223 -139385935 - L1M3 LINE L1 -637 5531 5488 417 153 0 0 chr3 78651223 78651295 -139385863 + CT-rich Low_complexity Low_complexity 4 75 0 2231 154 1 0 chr3 78651302 78651781 -139385377 - L1M3 LINE L1 -712 5468 4989 895 179 0 0 chr3 78651804 78651944 -139385214 - FRAM SINE Alu -37 139 1 1221 203 60 11 chr3 78651944 78652225 -139384933 - L1M3 LINE L1 -1153 4993 4699 1499 150 36 11 chr3 78652353 78652627 -139384531 + L1MB7 LINE L1 5878 6158 -26 850 217 54 5 chr3 78652657 78652860 -139384298 + L1MC4 LINE L1 6866 7078 -964 616 189 90 8 chr3 78652884 78653006 -139384152 + FLAM_C SINE Alu 1 132 -1 24 0 0 0 chr3 78653006 78653030 -139384128 + AT_rich Low_complexity Low_complexity 1 24 0 2239 237 50 2 chr3 78653030 78653554 -139383604 + MLT1F1 LTR MaLR 12 560 -7 1311 226 219 12 chr3 78653555 78654047 -139383111 + L1MC4 LINE L1 7265 7858 -184 232 125 0 0 chr3 78654147 78654179 -139382979 + Alu SINE Alu 221 252 -48 591 204 0 0 chr3 78654218 78654316 -139382842 - AluJ/FLAM SINE Alu -213 99 2 1366 150 73 83 chr3 78654361 78654661 -139382497 - AluJb SINE Alu -15 297 1 2152 114 0 10 chr3 78654669 78654959 -139382199 - AluSg SINE Alu -23 287 1 1801 116 0 0 chr3 78654968 78655210 -139381948 - AluSg1 SINE Alu -10 299 58 2396 86 0 3 chr3 78655410 78655714 -139381444 + AluSq SINE Alu 1 303 -10 232 282 123 61 chr3 78655787 78656064 -139381094 - L2 LINE L2 -708 2606 2313 222 255 92 31 chr3 78656123 78656221 -139380937 - L2 LINE L2 -1025 2289 2186 2354 101 3 0 chr3 78656233 78656530 -139380628 + AluSx SINE Alu 1 298 -14 2151 124 0 7 chr3 78656555 78656854 -139380304 + AluSg SINE Alu 1 297 -13 786 158 8 30 chr3 78656954 78657087 -139380071 + FRAM SINE Alu 34 163 -13 24 0 0 0 chr3 78657117 78657141 -139380017 + AT_rich Low_complexity Low_complexity 1 24 0 281 302 12 23 chr3 78657155 78657241 -139379917 - MER5A DNA MER1_type -93 96 12 311 268 55 39 chr3 78657671 78657798 -139379360 - MLT1J LTR MaLR -4 507 379 238 265 60 24 chr3 78657824 78657907 -139379251 - MLT1J LTR MaLR -202 309 224 1306 205 28 21 chr3 78657915 78658226 -139378932 + AluJb SINE Alu 5 312 0 376 196 0 28 chr3 78658409 78658516 -139378642 + (TATATG)n Simple_repeat Simple_repeat 4 107 0 975 136 0 0 chr3 78658523 78658655 -139378503 - FLAM_C SINE Alu -1 132 1 1800 181 16 47 chr3 78658696 78659082 -139378076 - MLT1A2 LTR MaLR 0 374 1 1206 178 37 37 chr3 78659082 78659138 -139378020 - MLT1A2-int LTR MaLR 0 1735 1680 2501 63 0 0 chr3 78659138 78659438 -139377720 + AluSg SINE Alu 3 302 -8 1206 178 37 37 chr3 78659438 78659651 -139377507 - MLT1A2-int LTR MaLR -54 1681 1466 531 226 9 9 chr3 78659651 78659757 -139377401 - Tigger7 DNA MER2_type 0 2491 2386 2254 81 0 17 chr3 78659949 78660246 -139376912 - AluSc SINE Alu -17 292 1 2355 75 14 0 chr3 78660575 78660867 -139376291 - AluSp SINE Alu -12 301 6 1796 148 44 3 chr3 78661256 78661553 -139375605 + AluJo SINE Alu 1 309 -3 805 142 8 8 chr3 78661625 78661752 -139375406 + FLAM_C SINE Alu 1 127 -16 360 258 67 0 chr3 78662352 78662441 -139374717 + L2 LINE L2 2553 2647 -667 1394 184 4 0 chr3 78662461 78662689 -139374469 - MER68 LTR ERV1 0 562 334 2067 115 35 0 chr3 78662689 78662975 -139374183 + AluSq SINE Alu 1 296 -17 351 165 32 6 chr3 78663342 78663500 -139373658 + (TA)n Simple_repeat Simple_repeat 2 163 0 43 20 0 0 chr3 78663502 78663552 -139373606 + AT_rich Low_complexity Low_complexity 1 50 0 216 0 0 0 chr3 78663937 78663961 -139373197 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2215 106 0 3 chr3 78664216 78664508 -139372650 + AluSg SINE Alu 1 291 -19 1856 132 3 58 chr3 78664823 78665134 -139372024 - AluSx SINE Alu -18 294 1 444 227 116 52 chr3 78665545 78665717 -139371441 + MIR SINE MIR 29 211 -51 286 396 30 52 chr3 78665729 78665959 -139371199 - L2 LINE L2 -34 3238 3014 246 214 71 71 chr3 78666051 78666121 -139371037 - L2 LINE L2 -4 3268 3199 * 556 280 16 6 chr3 78666117 78666299 -139370859 + MIR SINE MIR 75 258 -4 758 164 139 67 chr3 78666315 78666396 -139370762 - MER45A DNA AcHobo -1403 178 104 2104 119 10 0 chr3 78666396 78666689 -139370469 + AluSg SINE Alu 1 296 -14 2409 80 3 3 chr3 78666693 78666993 -139370165 + AluSp SINE Alu 1 300 -13 758 164 139 67 chr3 78666993 78667071 -139370087 - MER45A DNA AcHobo -1479 102 2 319 287 123 0 chr3 78667248 78667370 -139369788 - L1MC4 LINE L1 -3 8039 7903 820 144 8 0 chr3 78667370 78667495 -139369663 - FLAM_C SINE Alu -14 129 4 1748 143 21 35 chr3 78667672 78668001 -139369157 + AluSx SINE Alu 1 325 0 1058 79 30 12 chr3 78668174 78668338 -139368820 - AluSx SINE Alu -109 203 37 2533 241 17 11 chr3 78668381 78668920 -139368238 - MLT1F LTR MaLR 0 542 1 1885 136 70 0 chr3 78668983 78669269 -139367889 - AluJb SINE Alu -6 306 1 5607 114 36 88 chr3 78669284 78670373 -139366785 - L1MA7 LINE L1 -6 6285 5254 2474 79 3 0 chr3 78670381 78670685 -139366473 - AluSp SINE Alu -8 305 1 846 116 0 0 chr3 78671568 78671680 -139365478 + AluSg/x SINE Alu 182 293 -19 823 107 0 9 chr3 78671701 78671813 -139365345 - L1MA2 LINE L1 -4 6300 6190 2199 74 19 7 chr3 78671819 78672128 -139365030 - L1MA3 LINE L1 -259 6046 5734 2005 142 0 22 chr3 78672230 78672400 -139364758 - AluSx SINE Alu -8 304 132 219 22 44 44 chr3 78672400 78672445 -139364713 + (TTTTA)n Simple_repeat Simple_repeat 2 46 0 2279 88 0 0 chr3 78672445 78672728 -139364430 - AluY SINE Alu -28 283 1 2005 142 0 22 chr3 78672728 78672867 -139364291 - AluSx SINE Alu -178 134 1 812 289 156 21 chr3 78672991 78673409 -139363749 - MLT1K LTR MaLR -2 474 1 1989 120 4 0 chr3 78673461 78673759 -139363399 - AluSx SINE Alu 0 304 6 180 0 0 0 chr3 78673843 78673863 -139363295 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1800 149 0 14 chr3 78673899 78674188 -139362970 - AluJb SINE Alu -27 285 1 402 240 72 16 chr3 78674356 78674481 -139362677 - Charlie1b DNA MER1_type -295 228 97 1127 147 6 0 chr3 78674481 78674644 -139362514 - AluSg/x SINE Alu -23 287 124 817 173 0 43 chr3 78674679 78674818 -139362340 - FLAM_C SINE Alu 0 133 1 1705 138 10 41 chr3 78675045 78675133 -139362025 - Tigger7 DNA MER2_type -237 496 407 1649 164 52 7 chr3 78675133 78675420 -139361738 + AluJb SINE Alu 1 300 -12 1705 138 10 41 chr3 78675420 78675622 -139361536 - Tigger7 DNA MER2_type -326 407 215 3452 99 8 14 chr3 78675623 78676106 -139361052 + MER1A DNA MER1_type 1 480 -49 626 199 110 0 chr3 78676114 78676250 -139360908 - Tigger7 DNA MER2_type -331 220 69 2141 110 4 0 chr3 78676294 78676604 -139360554 - AluSp SINE Alu 0 311 1 2240 90 17 0 chr3 78676997 78677286 -139359872 + AluSc SINE Alu 1 294 -15 2081 125 6 16 chr3 78677954 78678267 -139358891 + AluSx SINE Alu 1 310 -2 1719 191 10 0 chr3 78678300 78678603 -139358555 - AluJo SINE Alu -6 306 1 7184 118 19 19 chr3 78678603 78679095 -139358063 - Tigger1 DNA MER2_type -1335 1083 592 819 172 0 8 chr3 78679095 78679229 -139357929 + FLAM_C SINE Alu 1 133 0 7184 118 19 19 chr3 78679229 78679819 -139357339 - Tigger1 DNA MER2_type -1826 592 2 260 206 59 15 chr3 78680168 78680236 -139356922 + MER5A DNA MER1_type 36 106 -83 349 213 0 0 chr3 78680326 78680387 -139356771 + Charlie1 DNA MER1_type 1 61 -2700 338 178 164 0 chr3 78680397 78680470 -139356688 + Charlie1 DNA MER1_type 2350 2434 -327 984 168 71 30 chr3 78680520 78680642 -139356516 + Charlie1 DNA MER1_type 2417 2533 -228 1522 161 0 29 chr3 78680642 78680885 -139356273 + MER46A DNA MER2_type 1 236 0 984 168 71 30 chr3 78680885 78681030 -139356128 + Charlie1 DNA MER1_type 2533 2695 -66 548 143 0 22 chr3 78681031 78681122 -139356036 + AluS SINE Alu 1 89 -223 2755 88 33 84 chr3 78681224 78681858 -139355300 - SVA Other Other -518 868 393 21 36 0 0 chr3 78681909 78681937 -139355221 + GC_rich Low_complexity Low_complexity 1 28 0 253 293 146 0 chr3 78682842 78682924 -139354234 - MLT1K LTR MaLR -492 96 3 2217 99 34 0 chr3 78682933 78683225 -139353933 - AluSx SINE Alu -10 302 1 632 215 129 5 chr3 78683225 78683411 -139353747 + L1MC4 LINE L1 7832 8040 -2 1866 130 10 3 chr3 78683777 78684070 -139353088 - L1MA7 LINE L1 0 6291 5997 2172 131 7 3 chr3 78684098 78684404 -139352754 - AluJb SINE Alu -5 307 1 2398 92 0 0 chr3 78684408 78684711 -139352447 - AluSg SINE Alu -7 303 1 398 241 138 35 chr3 78684822 78684996 -139352162 + L1MC4a LINE L1 5670 5861 -1947 235 255 142 9 chr3 78684996 78685102 -139352056 + L1MC4a LINE L1 5811 5930 -1878 285 51 0 0 chr3 78685331 78685370 -139351788 + (T)n Simple_repeat Simple_repeat 1 39 0 1097 153 17 11 chr3 78685391 78685568 -139351590 - AluJo SINE Alu -134 178 1 228 353 52 26 chr3 78685692 78685808 -139351350 + L2 LINE L2 3146 3264 -8 519 262 77 88 chr3 78686011 78686221 -139350937 + L1ME4a LINE L1 5562 5773 -348 2163 119 3 0 chr3 78686221 78686516 -139350642 - AluSq SINE Alu -17 296 1 519 262 77 88 chr3 78686516 78686747 -139350411 + L1ME4a LINE L1 5773 5998 -123 1028 92 0 0 chr3 78686767 78686897 -139350261 - AluSq/x SINE Alu -179 134 5 1757 152 14 24 chr3 78686918 78687208 -139349950 - AluJo SINE Alu -25 287 1 458 188 43 87 chr3 78687528 78687666 -139349492 + L1ME2 LINE L1 5963 6094 -70 1250 111 4 115 chr3 78687766 78688009 -139349149 + AluSq SINE Alu 98 313 0 3056 112 34 77 chr3 78688014 78688498 -139348660 - L1MA4 LINE L1 -9 6291 5833 1997 136 51 0 chr3 78688498 78688793 -139348365 - AluSg SINE Alu 0 310 1 3056 112 34 77 chr3 78688793 78688869 -139348289 - L1MA4 LINE L1 -467 5833 5755 2145 131 0 0 chr3 78688935 78689241 -139347917 - AluSx SINE Alu -6 306 1 191 250 19 0 chr3 78689916 78689968 -139347190 + MIR SINE MIR 184 236 -26 2414 63 0 20 chr3 78690199 78690499 -139346659 - AluY SINE Alu -17 294 1 1170 206 109 96 chr3 78691016 78691549 -139345609 + MER34B LTR ERV1 5 544 -21 2194 119 7 0 chr3 78691692 78692002 -139345156 - AluSx SINE Alu 0 312 1 2437 86 0 0 chr3 78692004 78692308 -139344850 - AluY SINE Alu -7 304 1 2142 116 3 0 chr3 78692570 78692862 -139344296 + AluSx SINE Alu 1 293 -19 1528 95 0 45 chr3 78693626 78693848 -139343310 - AluSg SINE Alu -98 212 1 922 128 0 0 chr3 78693848 78693981 -139343177 - AluSg SINE Alu -177 133 1 190 264 68 135 chr3 78693991 78694025 -139343133 - L2 LINE L2 -540 2774 2739 2026 120 0 3 chr3 78694025 78694384 -139342774 - AluSx SINE Alu 0 358 1 190 264 68 135 chr3 78694384 78694511 -139342647 - L2 LINE L2 -575 2739 2623 2304 89 3 0 chr3 78694516 78694807 -139342351 - AluSp SINE Alu -21 292 1 180 313 0 31 chr3 78694859 78694923 -139342235 - L2 LINE L2 -799 2515 2454 2232 86 21 3 chr3 78694938 78695228 -139341930 - AluSx SINE Alu -16 296 2 27 0 0 0 chr3 78695271 78695298 -139341860 + AT_rich Low_complexity Low_complexity 1 27 0 437 281 70 34 chr3 78696220 78696541 -139340617 - L1ME4a LINE L1 -1 6120 5787 1983 130 0 7 chr3 78696918 78697226 -139339932 + AluSx SINE Alu 1 306 0 2278 106 0 3 chr3 78697231 78697532 -139339626 + AluSg SINE Alu 1 300 -10 186 291 89 13 chr3 78697722 78697801 -139339357 + MIR SINE MIR 76 160 -102 * 811 245 281 36 chr3 78697791 78698232 -139338926 + L2 LINE L2 2412 2960 -354 560 219 206 40 chr3 78698266 78698379 -139338779 + L2 LINE L2 3048 3141 -172 2285 96 0 46 chr3 78698379 78698702 -139338456 - AluSx SINE Alu -4 308 1 560 219 206 40 chr3 78698702 78698816 -139338342 + L2 LINE L2 3141 3313 0 254 257 178 0 chr3 78698816 78698917 -139338241 + MIR SINE MIR 144 262 0 187 305 17 0 chr3 78698969 78699028 -139338130 - L2 LINE L2 -302 2970 2911 457 89 0 0 chr3 78699221 78699277 -139337881 + Alu SINE Alu 234 289 -21 2234 110 0 0 chr3 78699286 78699577 -139337581 - AluSx SINE Alu -16 296 6 1050 171 0 6 chr3 78699709 78699885 -139337273 - AluJb SINE Alu -2 310 136 183 194 0 0 chr3 78700235 78700266 -139336892 + MER5A DNA MER1_type 10 40 -149 2099 130 0 17 chr3 78700268 78700568 -139336590 - AluSx SINE Alu -17 295 1 300 157 0 20 chr3 78700569 78700620 -139336538 + MER5A DNA MER1_type 26 75 -114 1089 73 0 0 chr3 78701102 78701239 -139335919 - AluSp/q SINE Alu -2 311 175 867 175 184 2 chr3 78701406 78701630 -139335528 - L1ME2 LINE L1 0 6164 5908 686 156 31 0 chr3 78701631 78701759 -139335399 - L1ME2 LINE L1 -318 5856 5725 1360 158 4 17 chr3 78701759 78701937 -139335221 - AluJo SINE Alu 0 312 136 2295 82 3 3 chr3 78701937 78702229 -139334929 - AluY SINE Alu -19 292 1 1360 158 4 17 chr3 78702229 78702284 -139334874 - AluJo SINE Alu -176 136 82 2105 189 46 9 chr3 78702286 78702747 -139334411 - L1ME2 LINE L1 -447 5731 5254 1614 188 32 10 chr3 78702770 78703078 -139334080 - MLT1A1 LTR MaLR 0 365 51 1018 178 44 0 chr3 78703087 78703312 -139333846 - L1ME2 LINE L1 -970 5176 4942 184 291 0 78 chr3 78703601 78703704 -139333454 + L2 LINE L2 2759 2853 -461 261 288 90 9 chr3 78703731 78703842 -139333316 - MIR SINE MIR -95 167 48 1492 208 71 49 chr3 78704232 78704284 -139332874 - MLT1A2 LTR MaLR 0 374 325 1708 177 14 0 chr3 78704284 78704587 -139332571 - AluSx SINE Alu 0 307 1 1492 208 71 49 chr3 78704587 78704899 -139332259 - MLT1A2 LTR MaLR -49 325 1 432 267 52 73 chr3 78705652 78705682 -139331476 - MLT1K LTR MaLR -9 579 550 1746 167 19 32 chr3 78705682 78705993 -139331165 + AluJb SINE Alu 1 307 -5 432 267 52 73 chr3 78705993 78706153 -139331005 - MLT1K LTR MaLR -38 550 393 2310 125 0 0 chr3 78706289 78706601 -139330557 + AluSx SINE Alu 1 312 0 1967 145 13 7 chr3 78707014 78707317 -139329841 - AluSq SINE Alu -8 305 1 469 138 0 50 chr3 78707326 78707406 -139329752 - AluJ/FRAM SINE Alu -20 292 217 1212 88 0 44 chr3 78708243 78708259 -139328899 - AluY SINE Alu 0 311 296 3368 88 4 31 chr3 78708259 78708737 -139328421 - L1PA14 LINE L1 0 6161 5697 1711 114 0 35 chr3 78708740 78709026 -139328132 - AluSg SINE Alu 0 315 39 1212 88 0 44 chr3 78709026 78709185 -139327973 - AluY SINE Alu -17 294 139 1466 188 75 3 chr3 78709571 78709853 -139327305 + AluJo SINE Alu 1 302 -10 2057 107 0 88 chr3 78709853 78710013 -139327145 + AluSx SINE Alu 2 120 -192 2161 77 3 55 chr3 78710013 78710324 -139326834 + AluY SINE Alu 1 295 -16 2057 107 0 88 chr3 78710324 78710491 -139326667 + AluSx SINE Alu 120 300 -12 234 194 16 48 chr3 78711117 78711179 -139325979 - L2 LINE L2 0 3313 3254 207 0 0 0 chr3 78711459 78711482 -139325676 + (A)n Simple_repeat Simple_repeat 1 23 0 2322 75 13 3 chr3 78711739 78712045 -139325113 + AluSp SINE Alu 1 309 -4 2208 81 20 20 chr3 78713155 78713453 -139323705 + AluSg SINE Alu 1 298 -12 443 266 55 76 chr3 78713485 78713722 -139323436 - MIR SINE MIR -17 245 14 889 114 11 86 chr3 78714057 78714232 -139322926 + FAM SINE Alu 1 42 -7 249 250 182 61 chr3 78714581 78714713 -139322445 + MIR3 SINE MIR 19 166 -42 1742 174 3 7 chr3 78714808 78715096 -139322062 + AluJo SINE Alu 1 287 -25 523 165 0 0 chr3 78715201 78715280 -139321878 + AluJb SINE Alu 209 287 -25 1612 292 62 40 chr3 78715710 78715833 -139321325 - L3 LINE CR1 -11 1566 1447 1910 136 0 0 chr3 78715833 78716113 -139321045 + AluSx SINE Alu 21 300 -12 2031 132 0 7 chr3 78716114 78716446 -139320712 + AluSx SINE Alu 1 330 0 1612 292 62 40 chr3 78716446 78716992 -139320166 - L3 LINE CR1 -129 1448 878 1658 135 0 4 chr3 78717507 78717744 -139319414 + AluSx SINE Alu 1 236 -76 298 286 0 0 chr3 78718002 78718086 -139319072 - MIR3 SINE MIR -6 202 119 419 224 7 32 chr3 78718173 78718305 -139318853 - L1ME3A LINE L1 -206 5964 5833 391 366 12 12 chr3 78718359 78718520 -139318638 + MIR3 SINE MIR 31 191 -17 23 33 0 0 chr3 78719084 78719114 -139318044 + AT_rich Low_complexity Low_complexity 1 30 0 365 268 140 13 chr3 78719337 78719494 -139317664 - MIR SINE MIR 0 262 86 276 335 86 5 chr3 78719907 78719967 -139317191 + L2 LINE L2 3099 3153 -160 2313 107 0 0 chr3 78719967 78720266 -139316892 - AluSc SINE Alu -10 299 1 276 335 86 5 chr3 78720266 78720402 -139316756 + L2 LINE L2 3153 3311 -2 203 179 0 0 chr3 78721026 78721065 -139316093 + (TA)n Simple_repeat Simple_repeat 1 39 0 2199 112 3 3 chr3 78721331 78721636 -139315522 - AluSg1 SINE Alu -4 305 1 1995 107 0 95 chr3 78721646 78721984 -139315174 - AluSq SINE Alu -7 306 1 31 26 0 0 chr3 78721989 78722027 -139315131 + AT_rich Low_complexity Low_complexity 1 38 0 1836 169 0 38 chr3 78722322 78722642 -139314516 + AluJb SINE Alu 5 312 0 21 0 0 0 chr3 78723957 78723978 -139313180 + AT_rich Low_complexity Low_complexity 1 21 0 1326 183 9 0 chr3 78724088 78724307 -139312851 - AluJb SINE Alu -5 307 87 1697 147 48 27 chr3 78724333 78724626 -139312532 + AluJb SINE Alu 1 299 -13 1674 150 11 21 chr3 78726277 78726557 -139310601 - AluJo SINE Alu -21 291 15 2358 91 0 0 chr3 78726567 78726864 -139310294 - AluY SINE Alu -14 297 1 23 33 0 0 chr3 78727193 78727223 -139309935 + AT_rich Low_complexity Low_complexity 1 30 0 318 267 108 36 chr3 78727309 78727616 -139309542 + L1MC5 LINE L1 7603 7931 -30 242 244 221 12 chr3 78727688 78727774 -139309384 + MER5B DNA MER1_type 75 178 0 2154 123 0 3 chr3 78727844 78728144 -139309014 - AluSx SINE Alu -13 299 1 2071 193 35 19 chr3 78728259 78728690 -139308468 + L1ME1 LINE L1 5621 6058 -108 2082 165 11 3 chr3 78729009 78729361 -139307797 - MER46B DNA MER2_type -4 232 3 2420 78 0 3 chr3 78729487 78729782 -139307376 + AluSg SINE Alu 2 295 -15 2561 58 0 26 chr3 78730564 78730877 -139306281 + AluY SINE Alu 1 305 -6 782 132 18 66 chr3 78731081 78731101 -139306057 - L1M4 LINE L1 -378 5806 5787 2331 100 3 0 chr3 78731101 78731400 -139305758 + AluSp SINE Alu 1 300 -13 782 132 18 66 chr3 78731400 78731546 -139305612 - L1M4 LINE L1 -397 5787 5648 * 1177 174 14 14 chr3 78731544 78731721 -139305437 - L1MC4 LINE L1 -1161 6881 6702 342 67 0 0 chr3 78731721 78731766 -139305392 + (TG)n Simple_repeat Simple_repeat 2 46 0 1177 174 14 14 chr3 78731766 78731795 -139305363 - L1MC4 LINE L1 -1339 6703 6675 2768 79 14 11 chr3 78731884 78732241 -139304917 - L1PB1 LINE L1 0 6151 5791 180 0 0 0 chr3 78732241 78732261 -139304897 + (TG)n Simple_repeat Simple_repeat 2 21 0 5598 157 23 14 chr3 78732529 78734182 -139302976 - L1PB1 LINE L1 -360 5791 4128 256 200 14 43 chr3 78735983 78736053 -139301105 - MIR SINE MIR -75 187 120 213 306 59 24 chr3 78736171 78736256 -139300902 - MIR SINE MIR -169 93 6 2279 109 0 0 chr3 78736699 78737002 -139300156 - AluSg SINE Alu -7 303 1 809 124 73 154 chr3 78737006 78737129 -139300029 - MER68 LTR ERV1 -291 271 174 1917 164 57 23 chr3 78737129 78737482 -139299676 + MLT1A1 LTR MaLR 1 365 0 809 124 73 154 chr3 78737482 78737592 -139299566 - MER68 LTR ERV1 -388 174 57 1958 168 0 3 chr3 78737598 78737774 -139299384 - AluJo SINE Alu -3 309 133 2271 124 0 0 chr3 78737774 78738072 -139299086 - AluSx SINE Alu -14 298 1 1958 168 0 3 chr3 78738072 78738205 -139298953 - AluJo SINE Alu -179 133 1 1621 136 20 125 chr3 78738228 78738581 -139298577 - AluYb8 SINE Alu -2 316 1 1157 74 0 0 chr3 78738581 78738716 -139298442 - AluSq/x SINE Alu -178 135 1 296 295 232 19 chr3 78738772 78738979 -139298179 + L2 LINE L2 2659 2909 -405 915 81 0 0 chr3 78739007 78739118 -139298040 + AluY SINE Alu 20 130 -181 855 194 16 43 chr3 78739118 78739304 -139297854 + MER3 DNA MER1_type 19 199 -10 2123 134 0 16 chr3 78739491 78739804 -139297354 + AluSx SINE Alu 3 310 -2 284 301 71 26 chr3 78740502 78740615 -139296543 + L2 LINE L2 2933 3050 -222 1191 204 136 41 chr3 78740627 78740801 -139296357 + MLT1C LTR MaLR 1 157 -310 2390 90 0 13 chr3 78740801 78741113 -139296045 + AluSq SINE Alu 1 308 -5 1191 204 136 41 chr3 78741113 78741130 -139296028 + MLT1C LTR MaLR 157 171 -296 1563 176 20 26 chr3 78741130 78741436 -139295722 + AluJb SINE Alu 1 304 -8 1191 204 136 41 chr3 78741436 78741469 -139295689 + MLT1C LTR MaLR 171 199 -268 392 0 21 0 chr3 78741469 78741517 -139295641 + (TG)n Simple_repeat Simple_repeat 2 50 0 1191 204 136 41 chr3 78741517 78741702 -139295456 + MLT1C LTR MaLR 199 451 -16 3638 214 33 33 chr3 78741716 78742039 -139295119 - MER21B LTR ERV1 -51 812 490 2265 99 0 0 chr3 78742039 78742346 -139294812 - AluSx SINE Alu 0 307 1 3638 214 33 33 chr3 78742346 78742832 -139294326 - MER21B LTR ERV1 -372 491 2 288 287 51 56 chr3 78742866 78742963 -139294195 + L2 LINE L2 3060 3156 -157 2223 128 0 3 chr3 78742963 78743269 -139293889 - AluSx SINE Alu -7 305 1 288 287 51 56 chr3 78743269 78743366 -139293792 + L2 LINE L2 3156 3253 -60 1598 177 21 0 chr3 78743534 78743816 -139293342 - AluJb SINE Alu -24 288 1 1434 139 84 26 chr3 78743827 78744100 -139293058 - L1MB3 LINE L1 0 6183 5895 2140 113 160 168 chr3 78744105 78744249 -139292909 + MER50 LTR ERV1 1 145 -589 1799 89 71 60 chr3 78744249 78744575 -139292583 + AluSq SINE Alu 1 329 0 2140 113 160 168 chr3 78744575 78744914 -139292244 + MER50 LTR ERV1 145 481 -253 841 152 0 36 chr3 78744914 78745052 -139292106 + FLAM_C SINE Alu 1 133 0 2140 113 160 168 chr3 78745052 78745179 -139291979 + MER50 LTR ERV1 481 608 -126 349 134 60 15 chr3 78745175 78745242 -139291916 + FLAM SINE Alu 64 133 0 * 1042 133 40 6 chr3 78745242 78745415 -139291743 - L1MB3 LINE L1 -409 5771 5593 22 35 0 0 chr3 78745415 78745444 -139291714 + AT_rich Low_complexity Low_complexity 1 29 0 2173 104 37 0 chr3 78745543 78745841 -139291317 + AluSx SINE Alu 1 309 -3 2143 143 0 0 chr3 78745883 78746190 -139290968 + AluJb SINE Alu 5 311 -1 1954 93 0 55 chr3 78746305 78746595 -139290563 + AluSx SINE Alu 2 275 -37 467 328 25 0 chr3 78947178 78947376 -139089782 + L2 LINE L2 2562 2764 -550 2362 103 0 9 chr3 78947436 78947784 -139089374 - L1MA4A LINE L1 -2 6301 5957 518 145 0 0 chr3 78947784 78947860 -139089298 - AluJ/FLAM SINE Alu -236 76 1 4390 94 25 3 chr3 78947860 78948489 -139088669 - L1MA4A LINE L1 -332 5971 5329 664 312 79 40 chr3 78948598 78949027 -139088131 + L2 LINE L2 2863 3308 -5 184 240 20 20 chr3 78949579 78949629 -139087529 - L3b LINE CR1 -110 1473 1424 2167 123 0 16 chr3 78950696 78951006 -139086152 - AluSx SINE Alu -7 305 1 45 0 0 0 chr3 78951757 78951802 -139085356 + AT_rich Low_complexity Low_complexity 1 45 0 891 136 0 0 chr3 78951802 78951920 -139085238 - FLAM_C SINE Alu -25 118 1 227 185 74 37 chr3 78951967 78952021 -139085137 + L1ME2 LINE L1 5616 5671 -2137 1013 219 111 86 chr3 78952038 78952445 -139084713 + L1ME2 LINE L1 5714 6130 -34 2173 135 3 3 chr3 78952795 78953107 -139084051 - AluSx SINE Alu 0 312 1 297 211 14 0 chr3 78953143 78953214 -139083944 + L1MC4a LINE L1 5812 5883 -1925 1127 103 7 0 chr3 78953219 78953365 -139083793 + AluSg SINE Alu 1 147 -163 2328 86 3 3 chr3 78953487 78953788 -139083370 + AluY SINE Alu 4 304 -7 290 318 31 31 chr3 78954164 78954293 -139082865 - L2 LINE L2 0 3272 3144 519 236 64 43 chr3 78954764 78954893 -139082265 + LTR16C LTR ERVL 74 205 -286 1501 201 24 102 chr3 78954893 78955346 -139081812 + LTR9 LTR ERV1 1 418 -194 327 178 31 163 chr3 78955335 78955464 -139081694 + LTR19C LTR ERV1 668 779 0 * 262 128 0 0 chr3 78955464 78955503 -139081655 + LTR16C LTR ERVL 201 239 -252 1521 251 112 44 chr3 78956720 78957293 -139079865 + MLT1E3 LTR MaLR 3 614 -10 2451 60 3 7 chr3 78957376 78957676 -139079482 - AluSc SINE Alu -10 299 1 408 301 39 7 chr3 78957711 78957864 -139079294 + MIR SINE MIR 57 214 -48 538 282 52 11 chr3 78957990 78958164 -139078994 - MIR SINE MIR -75 187 7 1616 183 0 0 chr3 78958278 78958546 -139078612 + AluJo SINE Alu 28 295 -17 792 225 95 0 chr3 78958735 78958935 -139078223 + MER20 DNA MER1_type 1 219 0 408 253 199 0 chr3 78959259 78959445 -139077713 - L1ME4a LINE L1 0 6121 5899 272 135 0 19 chr3 78959575 78959627 -139077531 + (TTTCC)n Simple_repeat Simple_repeat 5 55 0 201 167 0 0 chr3 78959623 78959660 -139077498 + C-rich Low_complexity Low_complexity 5 42 0 * 1907 134 11 3 chr3 78959660 78959943 -139077215 - AluJo SINE Alu -7 305 21 351 274 0 10 chr3 78959958 78960060 -139077098 - L1ME4a LINE L1 -289 5832 5732 360 221 8 15 chr3 78960088 78960219 -139076939 + CT-rich Low_complexity Low_complexity 2 131 0 562 264 80 38 chr3 78961750 78961989 -139075169 + L2 LINE L2 3064 3312 -1 835 196 136 9 chr3 78962108 78962475 -139074683 - L1ME1 LINE L1 -6 6158 5705 342 317 25 8 chr3 78962481 78962601 -139074557 + MIR SINE MIR 10 131 -131 778 229 16 0 chr3 78963008 78963191 -139073967 + MIR SINE MIR 29 214 -48 437 299 99 63 chr3 78964093 78964488 -139072670 + MLT1K LTR MaLR 178 586 -2 328 175 62 12 chr3 78964494 78964574 -139072584 + MIR SINE MIR 70 153 -109 21 0 0 0 chr3 78964574 78964595 -139072563 + AT_rich Low_complexity Low_complexity 1 21 0 253 276 86 9 chr3 78964720 78964836 -139072322 + L2 LINE L2 3021 3145 -168 816 242 103 75 chr3 78964922 78965346 -139071812 + MLT1H LTR MaLR 123 408 -1 527 231 12 59 chr3 78965347 78965516 -139071642 + L2 LINE L2 3153 3313 0 396 310 75 21 chr3 78965955 78966142 -139071016 + L2 LINE L2 3116 3312 -1 364 200 169 39 chr3 78966270 78966400 -139070758 - MIR SINE MIR -3 259 113 235 269 45 0 chr3 78966427 78966494 -139070664 + MIR3 SINE MIR 89 158 -50 595 313 88 35 chr3 78966683 78966739 -139070419 + LTR16C LTR ERVL 92 144 -347 1840 203 61 5 chr3 78966739 78967114 -139070044 - MSTD LTR MaLR 0 396 1 595 313 88 35 chr3 78967114 78967434 -139069724 + LTR16C LTR ERVL 144 488 -3 487 257 13 26 chr3 78967432 78967584 -139069574 - MER103 DNA DNA 0 166 17 * 1038 224 0 9 chr3 78968517 78968736 -139068422 - MER20 DNA MER1_type -2 217 1 831 216 25 99 chr3 78968751 78968793 -139068365 + MIR SINE MIR 2 46 -216 1737 122 35 42 chr3 78968793 78969109 -139068049 - AluSx SINE Alu 0 314 1 831 216 25 99 chr3 78969109 78969347 -139067811 + MIR SINE MIR 46 262 0 183 322 99 0 chr3 78969363 78969450 -139067708 + L2 LINE L2 3165 3270 -43 2130 118 4 0 chr3 78969450 78969753 -139067405 + AluSx SINE Alu 1 304 0 183 322 99 0 chr3 78969753 78969784 -139067374 + L2 LINE L2 3270 3297 -16 213 194 0 0 chr3 78969790 78969826 -139067332 + polypurine Low_complexity Low_complexity 4 39 0 2149 88 41 3 chr3 78971231 78971525 -139065633 - AluY SINE Alu 0 311 7 330 327 73 13 chr3 78971832 78971982 -139065176 + L3 LINE CR1 1417 1575 -2 736 184 0 0 chr3 78972070 78972184 -139064974 + FLAM_C SINE Alu 2 115 -28 1525 138 5 0 chr3 78972221 78972445 -139064713 + AluJb SINE Alu 88 312 0 600 297 28 19 chr3 78972485 78972697 -139064461 + LTR33 LTR ERVL 1 214 -307 327 25 0 0 chr3 78972725 78972765 -139064393 + (TC)n Simple_repeat Simple_repeat 1 40 0 260 206 48 16 chr3 78972833 78972896 -139064262 + LTR33 LTR ERVL 457 521 0 321 271 42 10 chr3 78973694 78973790 -139063368 + L2 LINE L2 3169 3267 -5 2229 85 0 7 chr3 78974166 78974497 -139062661 + AluSc SINE Alu 1 329 0 465 271 155 10 chr3 78974561 78974768 -139062390 + L2 LINE L2 3077 3313 0 404 245 43 29 chr3 78975121 78975260 -139061898 + MLT1J1 LTR MaLR 6 146 -300 236 245 112 20 chr3 78975372 78975470 -139061688 + MLT1J1 LTR MaLR 340 446 0 214 294 18 73 chr3 78975791 78975900 -139061258 + MIR SINE MIR 21 123 -85 1112 151 0 2 chr3 78976040 78976302 -139060856 + AluSx SINE Alu 3 321 0 228 315 155 17 chr3 78976614 78976795 -139060363 + L2 LINE L2 2866 3071 -201 434 295 80 50 chr3 78976861 78977177 -139059981 - MLT1L LTR MaLR -84 531 102 613 261 261 31 chr3 78977696 78978182 -139058976 - MLT1L LTR MaLR -17 598 1 1056 187 50 10 chr3 78978902 78979100 -139058058 + MER58A DNA MER1_type 19 224 0 29 0 0 0 chr3 78979682 78979711 -139057447 + AT_rich Low_complexity Low_complexity 1 29 0 1926 166 0 10 chr3 78979723 78980037 -139057121 + AluJo SINE Alu 1 311 -1 453 259 22 30 chr3 78980065 78980200 -139056958 - MIR SINE MIR -16 246 113 513 228 29 0 chr3 78980217 78980353 -139056805 - MER5A DNA MER1_type -36 153 14 321 262 248 5 chr3 78980969 78981175 -139055983 + MIR SINE MIR 2 257 -5 48 91 0 0 chr3 78981279 78981411 -139055747 + AT_rich Low_complexity Low_complexity 1 132 0 2062 149 0 0 chr3 78981457 78981759 -139055399 - AluSx SINE Alu -10 302 1 22 0 0 0 chr3 78982188 78982210 -139054948 + AT_rich Low_complexity Low_complexity 1 22 0 527 288 170 0 chr3 78982891 78983044 -139054114 - MER5A DNA MER1_type -2 187 9 1921 143 24 43 chr3 78983145 78983516 -139053642 - THE1B LTR MaLR 0 364 1 424 292 88 28 chr3 78983716 78983932 -139053226 + MIR SINE MIR 21 249 -13 180 0 0 0 chr3 78984638 78984658 -139052500 + (A)n Simple_repeat Simple_repeat 1 20 0 2416 86 3 0 chr3 78984667 78984970 -139052188 + AluSg SINE Alu 1 304 -6 504 323 3 0 chr3 78985113 78985286 -139051872 - MIR SINE MIR -65 143 16 751 216 49 25 chr3 78985869 78986073 -139051085 + MER3 DNA MER1_type 1 209 0 1086 163 71 5 chr3 78986329 78986525 -139050633 + MER3 DNA MER1_type 1 209 0 701 171 22 21 chr3 78986706 78986972 -139050186 + CT-rich Low_complexity Low_complexity 1 266 0 1745 163 61 0 chr3 78986972 78987266 -139049892 - AluJo SINE Alu 0 312 1 194 345 179 0 chr3 78987373 78987518 -139049640 - MIR SINE MIR -1 261 91 315 0 0 0 chr3 78987731 78987766 -139049392 + (A)n Simple_repeat Simple_repeat 1 35 0 585 221 0 0 chr3 78988052 78988156 -139049002 + MER81 DNA DNA 2 105 -9 876 173 76 83 chr3 78988368 78988532 -139048626 + ORSL DNA AcHobo 1 164 -111 2044 158 0 3 chr3 78988532 78988836 -139048322 - AluJb SINE Alu -9 303 1 876 173 76 83 chr3 78988836 78988948 -139048210 + ORSL DNA AcHobo 164 275 0 1402 213 59 27 chr3 78989022 78989431 -139047727 + Charlie4a DNA MER1_type 47 468 -40 602 276 15 25 chr3 78989872 78990068 -139047090 - MIR SINE MIR -17 245 52 1451 157 3 72 chr3 78990153 78990319 -139046839 - L1MA5 LINE L1 0 6300 6163 2121 121 3 3 chr3 78990319 78990608 -139046550 + AluJb SINE Alu 1 289 -23 1451 157 3 72 chr3 78990608 78990747 -139046411 - L1MA5 LINE L1 -137 6163 6016 246 250 71 0 chr3 78991629 78991685 -139045473 - L2 LINE L2 -2 3311 3252 198 0 0 0 chr3 78992760 78992782 -139044376 + (CA)n Simple_repeat Simple_repeat 2 23 0 288 0 0 0 chr3 78992784 78992816 -139044342 + (TG)n Simple_repeat Simple_repeat 2 33 0 258 32 0 0 chr3 78992815 78992846 -139044312 + (TA)n Simple_repeat Simple_repeat 2 32 0 * 1767 192 39 9 chr3 78992849 78993183 -139043975 + MER7A DNA MER2_type 1 342 -4 590 268 12 6 chr3 78993274 78993438 -139043720 - MIR SINE MIR -67 195 31 1750 137 3 44 chr3 78993667 78993996 -139043162 + AluSx SINE Alu 1 317 0 2447 57 0 13 chr3 78994982 78995297 -139041861 + AluY SINE Alu 1 311 0 25 0 0 0 chr3 78996189 78996214 -139040944 + AT_rich Low_complexity Low_complexity 1 25 0 181 271 108 48 chr3 78996287 78996453 -139040705 + L2 LINE L2 2788 2963 -351 186 189 0 0 chr3 78997151 78997188 -139039970 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 1376 189 126 54 chr3 78997206 78997555 -139039603 - MLT1A2 LTR MaLR 0 374 1 2155 102 3 3 chr3 78997724 78998036 -139039122 - AluSx SINE Alu 0 313 2 1440 204 16 29 chr3 78998037 78998350 -139038808 - L1MD2 LINE L1 -12 6347 6039 2074 134 7 0 chr3 78998355 78998646 -139038512 - AluSx SINE Alu -19 293 1 756 136 0 10 chr3 78998646 78998782 -139038376 - L1P4 LINE L1 -396 5769 5641 1647 169 6 45 chr3 78998857 78999171 -139037987 + AluJo SINE Alu 1 302 -10 315 252 84 9 chr3 78999193 78999300 -139037858 + L2 LINE L2 3199 3313 0 543 279 33 78 chr3 78999856 79000100 -139037058 + L2 LINE L2 3039 3271 -1 852 227 5 56 chr3 79000236 79000359 -139036799 - MER5A DNA MER1_type 0 189 78 2409 97 3 0 chr3 79000359 79000667 -139036491 - AluSq SINE Alu -4 309 1 852 227 5 56 chr3 79000667 79000741 -139036417 - MER5A DNA MER1_type -111 78 2 2132 124 7 0 chr3 79000973 79001271 -139035887 + AluSx SINE Alu 10 309 -3 454 301 7 7 chr3 79001289 79001425 -139035733 + MIR SINE MIR 20 155 -107 1215 208 9 0 chr3 79002440 79002656 -139034502 + MER58A DNA MER1_type 2 219 -5 443 294 55 41 chr3 79002947 79003165 -139033993 + MIR SINE MIR 20 240 -22 2209 219 86 29 chr3 79003745 79004293 -139032865 + MLT1E LTR MaLR 15 593 0 1881 172 16 3 chr3 79004713 79005021 -139032137 - AluJo SINE Alu 0 312 1 240 306 32 40 chr3 79005478 79005678 -139031480 + L2 LINE L2 3027 3267 -5 276 282 65 16 chr3 79005739 79005863 -139031295 + L2 LINE L2 2919 3048 -224 2145 104 0 20 chr3 79005899 79006197 -139030961 - AluSq SINE Alu -21 292 1 845 245 65 32 chr3 79006229 79006297 -139030861 + MER58A DNA MER1_type 2 66 -2354 276 30 0 0 chr3 79006297 79006330 -139030828 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 1673 176 11 4 chr3 79006334 79006613 -139030545 - AluJb SINE Alu -31 281 1 845 245 65 32 chr3 79006613 79006755 -139030403 + MER58A DNA MER1_type 68 224 0 444 319 124 23 chr3 79006891 79007239 -139029919 + L2 LINE L2 2874 3256 -57 586 101 0 0 chr3 79007239 79007318 -139029840 - AluJ/FRAM SINE Alu -7 305 227 230 200 146 0 chr3 79007429 79007484 -139029674 + L2 LINE L2 3210 3272 0 237 83 0 0 chr3 79007667 79007703 -139029455 + (TG)n Simple_repeat Simple_repeat 1 36 0 417 90 0 0 chr3 79007703 79007770 -139029388 + (GA)n Simple_repeat Simple_repeat 2 68 0 310 217 65 0 chr3 79007949 79008041 -139029117 - L1ME4a LINE L1 -5 6116 6019 249 224 0 0 chr3 79008077 79008135 -139029023 + CT-rich Low_complexity Low_complexity 4 61 0 352 266 112 49 chr3 79008174 79008460 -139028698 - L1ME4a LINE L1 -244 5877 5574 215 392 0 10 chr3 79008889 79008986 -139028172 + MER5A DNA MER1_type 49 144 -45 2833 71 3 0 chr3 79008986 79009337 -139027821 - L1PB1 LINE L1 0 6151 5800 2188 110 0 0 chr3 79009815 79010105 -139027053 + AluSx SINE Alu 2 291 -21 2573 181 74 43 chr3 79010675 79011193 -139025965 - Charlie2 DNA MER1_type 0 2862 2362 875 118 0 29 chr3 79011193 79011329 -139025829 - FLAM_C SINE Alu 0 133 2 2573 181 74 43 chr3 79011329 79011717 -139025441 - Charlie2 DNA MER1_type -500 2362 1856 542 242 6 61 chr3 79011723 79011888 -139025270 - Charlie2 DNA MER1_type -2459 323 168 352 243 63 18 chr3 79011998 79012109 -139025049 - Charlie2 DNA MER1_type -2702 160 45 482 187 76 111 chr3 79012113 79012284 -139024874 + L1MC4 LINE L1 7176 7340 -702 479 254 75 8 chr3 79012754 79012888 -139024270 + MER117 DNA MER1_type 2 144 -53 1164 223 140 55 chr3 79012925 79013431 -139023727 + MLT1F1 LTR MaLR 1 566 -1 494 294 7 14 chr3 79013738 79013881 -139023277 + L2 LINE L2 3168 3309 -4 29 90 0 0 chr3 79014435 79014513 -139022645 + AT_rich Low_complexity Low_complexity 1 78 0 228 175 228 0 chr3 79014827 79014884 -139022274 + MER117 DNA MER1_type 68 137 -60 183 254 134 15 chr3 79015856 79015923 -139021235 - L2 LINE L2 -5 3267 3193 297 191 0 0 chr3 79016250 79016297 -139020861 + MER63 DNA MER1_type 705 751 -310 292 296 62 0 chr3 79016293 79016374 -139020784 + MER63 DNA MER1_type 969 1054 -7 * 1398 267 75 101 chr3 79016438 79016570 -139020588 + L1M4 LINE L1 2853 2987 -3159 2212 124 0 7 chr3 79016570 79016869 -139020289 - AluSx SINE Alu -15 297 1 1398 267 75 101 chr3 79016869 79017329 -139019829 + L1M4 LINE L1 2987 3457 -2689 1095 235 163 86 chr3 79017329 79017839 -139019319 - MLT1H LTR MaLR 0 549 1 1398 267 75 101 chr3 79017839 79018334 -139018824 + L1M4 LINE L1 3457 3959 -2187 360 211 28 0 chr3 79018334 79018405 -139018753 + AluJo SINE Alu 63 135 -167 1398 267 75 101 chr3 79018405 79018902 -139018256 + L1M4 LINE L1 3959 4467 -1679 1494 155 48 17 chr3 79018931 79019222 -139017936 + L1MA9 LINE L1 5989 6288 -24 977 265 103 61 chr3 79019244 79019524 -139017634 + L1M4 LINE L1 4488 4755 -1391 2020 137 31 0 chr3 79019524 79019817 -139017341 + AluSx SINE Alu 1 302 -10 977 265 103 61 chr3 79019817 79020290 -139016868 + L1M4 LINE L1 4755 5273 -873 332 280 192 19 chr3 79020314 79020528 -139016630 - L2 LINE L2 -249 3064 2814 198 215 62 31 chr3 79020569 79020634 -139016524 - L2 LINE L2 -614 2700 2634 592 233 83 13 chr3 79020676 79020833 -139016325 + MIR SINE MIR 5 162 -85 562 165 90 23 chr3 79020838 79020971 -139016187 - Charlie4 DNA MER1_type -5 1956 1815 677 159 56 56 chr3 79020971 79021097 -139016061 + FLAM_C SINE Alu 1 126 -17 1163 175 10 82 chr3 79021097 79021388 -139015770 - Charlie4 DNA MER1_type -1691 270 1 180 254 45 0 chr3 79021521 79021588 -139015570 + MIR SINE MIR 63 132 -130 391 188 50 20 chr3 79022163 79022264 -139014894 + MER103 DNA DNA 55 158 -8 830 173 29 58 chr3 79023047 79023255 -139013903 + MER20 DNA MER1_type 1 202 -17 737 164 62 0 chr3 79023463 79023591 -139013567 + MER3 DNA MER1_type 3 138 -71 1815 191 64 3 chr3 79023595 79023956 -139013202 - L1PB4 LINE L1 -15 6141 5759 426 163 12 0 chr3 79023959 79024039 -139013119 + MER3 DNA MER1_type 129 209 0 245 186 0 0 chr3 79024004 79024047 -139013111 - MER3 DNA MER1_type -127 82 40 * 3957 109 127 140 chr3 79024389 79025768 -139011390 + pTR5 LTR ERV1 743 2438 0 1919 110 4 0 chr3 79025804 79026068 -139011090 + AluSg1 SINE Alu 39 303 -6 294 95 0 0 chr3 79028560 79028602 -139008556 + (TG)n Simple_repeat Simple_repeat 1 42 0 221 322 161 0 chr3 79030431 79030518 -139006640 - L2 LINE L2 0 3272 3172 743 165 0 16 chr3 79030659 79030786 -139006372 - FLAM_C SINE Alu -13 130 6 949 204 43 0 chr3 79030788 79030974 -139006184 - MLT1D LTR MaLR -309 196 3 2069 130 7 10 chr3 79031027 79031334 -139005824 + AluSx SINE Alu 1 306 -6 191 316 18 0 chr3 79031522 79031579 -139005579 + L2 LINE L2 3205 3262 -10 485 211 0 29 chr3 79031687 79031791 -139005367 - MER103 DNA DNA 0 166 66 230 286 102 51 chr3 79031923 79032021 -139005137 + L2 LINE L2 3170 3272 0 326 299 169 0 chr3 79032820 79032997 -139004161 + MIR SINE MIR 49 255 -7 23 68 0 0 chr3 79033030 79033074 -139004084 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr3 79033087 79033109 -139004049 + AT_rich Low_complexity Low_complexity 1 22 0 1135 185 92 67 chr3 79033331 79033486 -139003672 + MER33 DNA MER1_type 1 140 -2445 1666 200 100 3 chr3 79033486 79033816 -139003342 + MLT1A1 LTR MaLR 4 365 0 1135 185 92 67 chr3 79033816 79033987 -139003171 + MER33 DNA MER1_type 140 324 0 2424 82 3 0 chr3 79034438 79034741 -139002417 + AluSp SINE Alu 1 304 -9 1314 260 72 47 chr3 79034834 79035280 -139001878 - LTR16A1 LTR ERVL 0 457 1 1971 150 0 22 chr3 79035618 79035932 -139001226 + AluJo SINE Alu 3 309 -3 2198 95 0 7 chr3 79036466 79036772 -139000386 + AluSg SINE Alu 1 304 0 411 357 0 0 chr3 79036957 79037069 -139000089 - L2 LINE L2 -5 3308 3197 183 42 0 0 chr3 79037137 79037161 -138999997 + (TG)n Simple_repeat Simple_repeat 1 24 0 1504 183 42 25 chr3 79037162 79037447 -138999711 - AluJb SINE Alu -22 290 1 210 37 0 0 chr3 79037650 79037677 -138999481 + (T)n Simple_repeat Simple_repeat 1 27 0 1435 258 94 7 chr3 79037977 79038411 -138998747 + MLT1J LTR MaLR 40 511 0 210 322 0 34 chr3 79038855 79038973 -138998185 - L2 LINE L2 -640 2674 2561 501 296 74 42 chr3 79039044 79039328 -138997830 - L2 LINE L2 -1201 2113 1821 359 356 7 7 chr3 79040444 79040593 -138996565 + MIR SINE MIR 108 256 -6 682 240 58 0 chr3 79040956 79041127 -138996031 + MIR SINE MIR 65 245 -17 914 276 56 31 chr3 79041546 79041601 -138995557 + MLT1I LTR MaLR 1 53 -356 2955 135 97 5 chr3 79041601 79042046 -138995112 + MER66B LTR ERV1 1 486 0 914 276 56 31 chr3 79042046 79042382 -138994776 + MLT1I LTR MaLR 53 402 -7 563 288 25 6 chr3 79042385 79042548 -138994610 - MIR SINE MIR -94 168 3 2159 103 52 0 chr3 79042610 79042901 -138994257 - AluSg SINE Alu -4 306 1 358 283 40 20 chr3 79043409 79043561 -138993597 + L1MEc LINE L1 974 1128 -5268 2136 127 3 16 chr3 79043669 79043984 -138993174 + AluSx SINE Alu 1 311 -1 27 0 0 0 chr3 79044044 79044071 -138993087 + AT_rich Low_complexity Low_complexity 1 27 0 200 294 79 57 chr3 79044294 79044471 -138992687 - MER5A DNA MER1_type -5 184 4 263 309 99 0 chr3 79044886 79044967 -138992191 + MIR SINE MIR 4 92 -170 827 226 67 38 chr3 79045335 79045574 -138991584 - MIR SINE MIR -2 260 15 23 0 0 0 chr3 79046153 79046176 -138990982 + AT_rich Low_complexity Low_complexity 1 23 0 650 228 28 73 chr3 79046496 79046732 -138990426 + L2 LINE L2 2713 2937 -335 2055 93 9 37 chr3 79046780 79047101 -138990057 + MER1A DNA MER1_type 216 527 -2 1621 198 3 0 chr3 79049160 79049478 -138987680 - L1MD1 LINE L1 -16 6226 5908 422 108 0 0 chr3 79049479 79049546 -138987612 - L1MD1 LINE L1 -582 5596 5530 4270 226 101 33 chr3 79049549 79049980 -138987178 - L1MDa LINE L1 -803 5737 5337 1886 166 3 26 chr3 79049980 79050293 -138986865 - AluJb SINE Alu -6 306 1 4270 226 101 33 chr3 79050293 79050582 -138986576 - L1MDa LINE L1 -1203 5337 5069 1593 192 3 42 chr3 79050582 79050889 -138986269 - AluJb SINE Alu -17 295 1 4270 226 101 33 chr3 79050889 79051246 -138985912 - L1MDa LINE L1 -1471 5069 4738 2091 154 0 0 chr3 79051246 79051557 -138985601 - AluSx SINE Alu -1 311 1 4270 226 101 33 chr3 79051557 79054426 -138982732 - L1MDa LINE L1 -1802 4738 1443 3561 225 40 56 chr3 79054432 79055843 -138981315 - L1MDa LINE L1 -2391 4149 2761 2788 221 71 22 chr3 79055837 79056775 -138980383 - L1MDa LINE L1 -4548 1992 1009 * 749 176 4 31 chr3 79056891 79057132 -138980026 + CT-rich Low_complexity Low_complexity 1 234 0 371 183 0 0 chr3 79057134 79057194 -138979964 + polypyrimidine Low_complexity Low_complexity 3 62 0 759 136 171 0 chr3 79057196 79057336 -138979822 - MER21B LTR ERV1 -371 492 329 394 340 71 52 chr3 79057917 79058226 -138978932 - L1MDa LINE L1 -6204 336 22 232 45 0 45 chr3 79059039 79059083 -138978075 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 298 195 23 0 chr3 79059995 79060082 -138977076 + (TA)n Simple_repeat Simple_repeat 2 90 0 21 57 0 0 chr3 79060133 79060168 -138976990 + AT_rich Low_complexity Low_complexity 1 35 0 272 200 13 0 chr3 79060217 79060292 -138976866 + (TA)n Simple_repeat Simple_repeat 2 77 0 432 257 7 0 chr3 79060305 79060441 -138976717 + L1MDb LINE L1 1045 1181 -5228 219 103 0 0 chr3 79060441 79060480 -138976678 + (CA)n Simple_repeat Simple_repeat 2 40 0 305 281 62 23 chr3 79060480 79060608 -138976550 + L1MB4 LINE L1 5694 5826 -295 959 169 25 15 chr3 79060616 79060817 -138976341 + L1MB4 LINE L1 5978 6180 0 2366 89 7 0 chr3 79060939 79061241 -138975917 + AluY SINE Alu 1 304 -7 267 370 0 19 chr3 79061246 79061354 -138975804 + MER5B DNA MER1_type 4 109 -69 27 73 0 0 chr3 79061361 79061416 -138975742 + AT_rich Low_complexity Low_complexity 1 55 0 312 27 0 0 chr3 79061608 79061645 -138975513 + (TG)n Simple_repeat Simple_repeat 1 37 0 1126 251 118 30 chr3 79062386 79062852 -138974306 + LTR33 LTR ERVL 2 508 -13 406 315 55 34 chr3 79063223 79063458 -138973700 - MIR SINE MIR -5 257 18 2206 131 3 0 chr3 79063562 79063868 -138973290 - AluSx SINE Alu -5 307 1 679 279 108 0 chr3 79064191 79064413 -138972745 - MIR SINE MIR -3 259 14 645 194 102 5 chr3 79064466 79064672 -138972486 + Charlie5 DNA MER1_type 2360 2585 -27 2312 113 0 0 chr3 79064771 79065072 -138972086 - AluSg SINE Alu -9 301 1 342 45 0 0 chr3 79065550 79065594 -138971564 + (TG)n Simple_repeat Simple_repeat 2 45 0 382 296 42 21 chr3 79065849 79065991 -138971167 + MIR SINE MIR 7 151 -111 232 224 86 7 chr3 79065991 79066094 -138971064 + L1MD3 LINE L1 5887 6005 -339 708 289 39 10 chr3 79066371 79066579 -138970579 + MIR SINE MIR 35 248 -14 2341 70 3 0 chr3 79067565 79067852 -138969306 + AluY SINE Alu 1 288 -23 279 0 0 0 chr3 79067852 79067874 -138969284 + (TG)n Simple_repeat Simple_repeat 1 53 0 279 0 0 0 chr3 79067874 79067905 -138969253 + (TG)n Simple_repeat Simple_repeat 2 32 0 336 321 117 22 chr3 79067919 79068056 -138969102 + L2 LINE L2 3122 3271 -1 188 159 0 23 chr3 79068197 79068241 -138968917 + CT-rich Low_complexity Low_complexity 2 44 0 194 239 0 0 chr3 79068254 79068300 -138968858 - L2 LINE L2 -5 3308 3263 1133 219 14 0 chr3 79068723 79068938 -138968220 + MER58A DNA MER1_type 1 218 -6 1921 102 25 70 chr3 79068997 79069337 -138967821 + AluSx SINE Alu 3 312 0 343 266 220 2 chr3 79070079 79070249 -138966909 - MIR SINE MIR -51 211 3 603 152 0 0 chr3 79070582 79070674 -138966484 + FLAM_C SINE Alu 34 125 -18 1415 208 3 24 chr3 79070684 79070972 -138966186 + AluJo SINE Alu 1 282 -30 312 27 0 0 chr3 79070975 79071012 -138966146 + (CA)n Simple_repeat Simple_repeat 2 38 0 231 290 43 14 chr3 79071123 79071192 -138965966 - L2 LINE L2 -2 3270 3200 1366 122 31 26 chr3 79071752 79071981 -138965177 + L1MC1 LINE L1 6099 6328 -5 366 293 135 58 chr3 79072001 79072121 -138965037 - L1ME4a LINE L1 -25 6096 5987 2330 80 0 7 chr3 79072121 79072447 -138964711 + AluY SINE Alu 1 324 0 366 293 135 58 chr3 79072447 79072724 -138964434 - L1ME4a LINE L1 -134 5987 5666 228 246 18 0 chr3 79072923 79072980 -138964178 + MIR SINE MIR 201 258 -4 267 299 0 0 chr3 79074078 79074145 -138963013 - MIR SINE MIR 0 262 196 705 243 221 21 chr3 79074148 79074428 -138962730 - L2 LINE L2 -10 3303 2968 270 259 210 0 chr3 79074428 79074509 -138962649 - MIR SINE MIR -73 189 92 221 308 0 0 chr3 79075602 79075680 -138961478 + (TG)n Simple_repeat Simple_repeat 1 78 0 440 290 0 29 chr3 79075685 79075823 -138961335 + MER5A DNA MER1_type 52 185 -4 752 267 6 6 chr3 79075834 79076006 -138961152 + MER5B DNA MER1_type 2 173 -5 216 355 21 0 chr3 79076296 79076389 -138960769 - MER5A DNA MER1_type -91 98 4 1020 176 0 45 chr3 79076406 79076628 -138960530 + MER20 DNA MER1_type 7 218 -1 25 31 0 0 chr3 79078853 79078885 -138958273 + AT_rich Low_complexity Low_complexity 1 32 0 398 255 0 32 chr3 79079357 79079465 -138957693 - MIR SINE MIR -37 171 66 395 174 29 29 chr3 79079486 79079624 -138957534 + CT-rich Low_complexity Low_complexity 4 141 0 880 139 0 0 chr3 79079624 79079753 -138957405 - FLAM_C SINE Alu -4 129 1 403 226 26 174 chr3 79080424 79080619 -138956539 + MER5A DNA MER1_type 18 183 -6 24 32 0 0 chr3 79081100 79081131 -138956027 + AT_rich Low_complexity Low_complexity 1 31 0 608 315 83 13 chr3 79081151 79081681 -138955477 + L1ME LINE L1 5257 5823 -347 372 152 47 24 chr3 79081691 79081996 -138955162 + (TA)n Simple_repeat Simple_repeat 1 312 0 344 149 43 0 chr3 79082068 79082162 -138954996 + (TA)n Simple_repeat Simple_repeat 2 99 0 376 162 84 12 chr3 79082193 79082360 -138954798 + (TA)n Simple_repeat Simple_repeat 2 180 0 211 198 47 23 chr3 79082372 79082458 -138954700 + (TA)n Simple_repeat Simple_repeat 2 89 0 545 99 16 66 chr3 79082461 79082643 -138954515 + (TATAA)n Simple_repeat Simple_repeat 2 174 0 1561 159 4 4 chr3 79082653 79082910 -138954248 + AluJo SINE Alu 32 288 -24 22 0 0 0 chr3 79082910 79082932 -138954226 + AT_rich Low_complexity Low_complexity 1 22 0 2098 148 20 0 chr3 79082955 79083258 -138953900 + AluSx SINE Alu 1 309 -3 371 142 34 45 chr3 79083333 79083509 -138953649 + (TTATA)n Simple_repeat Simple_repeat 1 174 0 602 43 32 70 chr3 79083552 79083739 -138953419 + (TA)n Simple_repeat Simple_repeat 1 180 0 29 28 0 0 chr3 79083743 79083779 -138953379 + AT_rich Low_complexity Low_complexity 1 36 0 2325 112 3 0 chr3 79083805 79084110 -138953048 + AluSp SINE Alu 1 306 -7 2113 145 20 0 chr3 79084672 79084975 -138952183 - AluSx SINE Alu -3 309 1 22 0 0 0 chr3 79084998 79085020 -138952138 + AT_rich Low_complexity Low_complexity 1 22 0 1694 163 7 10 chr3 79085020 79085309 -138951849 - AluJo SINE Alu -24 288 1 210 344 84 15 chr3 79085929 79086060 -138951098 + L2 LINE L2 2721 2860 -454 237 292 125 0 chr3 79086291 79086363 -138950795 + L2 LINE L2 3119 3199 -73 676 293 52 9 chr3 79087608 79087820 -138949338 - MIR SINE MIR -36 226 6 2932 71 0 3 chr3 79088407 79088772 -138948386 + THE1B LTR MaLR 1 364 0 225 191 0 43 chr3 79088819 79088866 -138948292 + MER5C DNA MER1_type 4 48 -276 235 328 0 0 chr3 79088893 79088951 -138948207 + MER5A DNA MER1_type 132 189 0 284 343 0 0 chr3 79088979 79089052 -138948106 + L2 LINE L2 2982 3054 -218 362 373 18 18 chr3 79089267 79089436 -138947722 - MER5A DNA MER1_type 0 189 21 646 169 32 71 chr3 79089645 79089799 -138947359 + AluSg/x SINE Alu 150 297 -12 231 409 0 0 chr3 79090637 79090708 -138946450 - L2 LINE L2 -65 3207 3137 239 125 0 54 chr3 79090967 79091023 -138946135 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 546 262 81 40 chr3 79091029 79091277 -138945881 + MLT1J LTR MaLR 107 364 -147 901 206 25 20 chr3 79091303 79091507 -138945651 - MER3 DNA MER1_type -4 205 1 327 65 0 0 chr3 79092576 79092622 -138944536 + (TG)n Simple_repeat Simple_repeat 1 46 0 276 77 0 0 chr3 79092622 79092661 -138944497 + (GA)n Simple_repeat Simple_repeat 2 40 0 2375 107 0 3 chr3 79094334 79094644 -138942514 - AluSx SINE Alu 0 312 4 194 281 16 16 chr3 79095073 79095137 -138942021 - MIR SINE MIR -71 191 128 2795 143 26 24 chr3 79095439 79095895 -138941263 + LTR32 LTR ERVL 15 471 0 459 331 50 15 chr3 79096830 79097070 -138940088 - MIR SINE MIR -3 259 14 2398 68 0 3 chr3 79097173 79097465 -138939693 - AluY SINE Alu -20 291 1 1147 251 115 53 chr3 79098415 79098928 -138938230 - MLT1H LTR MaLR -4 545 1 1198 173 34 0 chr3 79099650 79099858 -138937300 - MER20 DNA MER1_type -3 216 2 21 36 0 0 chr3 79099947 79099975 -138937183 + AT_rich Low_complexity Low_complexity 1 28 0 2355 78 0 10 chr3 79100327 79100623 -138936535 + AluY SINE Alu 1 293 -18 384 298 50 0 chr3 79100677 79100798 -138936360 + MIR3 SINE MIR 34 160 -48 343 203 93 25 chr3 79101008 79101126 -138936032 - MIR SINE MIR -108 154 29 202 226 32 32 chr3 79104030 79104092 -138933066 + MIR SINE MIR 201 262 0 254 264 57 57 chr3 79104434 79104540 -138932618 + L2 LINE L2 3200 3305 -8 181 323 16 0 chr3 79105480 79105542 -138931616 - L2 LINE L2 -98 3174 3112 1945 154 10 0 chr3 79106476 79106768 -138930390 + AluSx SINE Alu 1 295 -17 186 224 0 0 chr3 79106845 79106894 -138930264 + GA-rich Low_complexity Low_complexity 18 66 0 2068 87 0 0 chr3 79106981 79107235 -138929923 - AluSq SINE Alu -10 303 50 1084 109 27 16 chr3 79107697 79107881 -138929277 + L1PB2 LINE L1 5966 6151 0 429 20 0 0 chr3 79108593 79108643 -138928515 + (TG)n Simple_repeat Simple_repeat 1 50 0 503 235 141 77 chr3 79109112 79109283 -138927875 - L1ME3A LINE L1 -21 6141 5982 799 226 47 19 chr3 79109283 79109495 -138927663 + MER20 DNA MER1_type 2 219 0 503 235 141 77 chr3 79109495 79109532 -138927626 - L1ME3A LINE L1 -180 5982 5949 2307 78 0 0 chr3 79109532 79109815 -138927343 - AluY SINE Alu 0 311 29 503 235 141 77 chr3 79109815 79109932 -138927226 - L1ME3A LINE L1 -213 5949 5796 1011 171 13 86 chr3 79110658 79110892 -138926266 - MER20 DNA MER1_type -1 218 2 565 289 74 5 chr3 79111398 79111588 -138925570 - MIR SINE MIR -13 249 47 944 252 109 41 chr3 79111589 79111818 -138925340 + MLT1H1 LTR MaLR 2 214 -379 2762 145 145 35 chr3 79111818 79112369 -138924789 + LTR9 LTR ERV1 1 612 0 944 252 109 41 chr3 79112369 79112650 -138924508 + MLT1H1 LTR MaLR 214 593 0 819 173 91 5 chr3 79113109 79113306 -138923852 - MER113 DNA MER1_type? -306 215 2 1087 148 10 25 chr3 79113527 79113729 -138923429 + L1PA7 LINE L1 5954 6152 -2 626 337 16 12 chr3 79114256 79114502 -138922656 + MIR SINE MIR 16 262 0 2517 138 48 5 chr3 79114681 79115095 -138922063 - Tigger2a DNA MER2_type -1 433 2 1891 186 28 73 chr3 79115108 79115485 -138921673 + MLT2D LTR ERVL 1 358 -56 270 0 0 0 chr3 79115485 79115515 -138921643 + (CA)n Simple_repeat Simple_repeat 2 31 0 1891 186 28 73 chr3 79115515 79115562 -138921596 + MLT2D LTR ERVL 358 406 -8 259 346 8 31 chr3 79115642 79115769 -138921389 - MIR SINE MIR -106 156 33 2488 50 7 13 chr3 79116047 79116346 -138920812 + AluY SINE Alu 12 308 -3 314 167 33 0 chr3 79117148 79117208 -138919950 - L2 LINE L2 -66 3247 3186 2032 147 6 6 chr3 79117240 79117552 -138919606 - AluJo SINE Alu 0 312 1 1228 186 14 0 chr3 79117552 79117767 -138919391 + MER20 DNA MER1_type 2 219 0 1142 156 48 11 chr3 79118162 79118348 -138918810 - AluSg/x SINE Alu -21 291 99 23 0 0 0 chr3 79118408 79118431 -138918727 + AT_rich Low_complexity Low_complexity 1 23 0 383 214 95 0 chr3 79118797 79118881 -138918277 + MIR3 SINE MIR 83 174 -34 2180 125 0 0 chr3 79118998 79119294 -138917864 - AluSx SINE Alu -16 296 1 41524 71 4 2 chr3 79120952 79127086 -138910072 - L1PA7 LINE L1 -10 6144 1 12761 105 16 43 chr3 79127087 79128124 -138909034 - L1P3 LINE L1 -4287 2174 1111 2365 87 0 29 chr3 79128124 79128436 -138908722 + AluY SINE Alu 1 303 -8 12761 105 16 43 chr3 79128436 79129563 -138907595 - L1P3 LINE L1 -5350 1111 4 926 231 120 71 chr3 79130429 79130980 -138906178 + L2 LINE L2 2720 3299 -14 2802 158 108 23 chr3 79130980 79131536 -138905622 - MER6A DNA MER2_type -2 603 1 372 273 0 0 chr3 79131541 79131717 -138905441 + (TA)n Simple_repeat Simple_repeat 2 177 0 2020 216 55 26 chr3 79132064 79132542 -138904616 + L1ME2 LINE L1 5600 6100 -64 1639 147 36 62 chr3 79132542 79132686 -138904472 + AluJo SINE Alu 1 147 -165 2519 73 0 0 chr3 79132686 79132988 -138904170 + AluY SINE Alu 1 302 -9 1639 147 36 62 chr3 79132988 79133150 -138904008 + AluJo SINE Alu 147 299 -13 2020 216 55 26 chr3 79133150 79133207 -138903951 + L1ME2 LINE L1 6100 6154 -10 21 0 0 0 chr3 79133210 79133231 -138903927 + AT_rich Low_complexity Low_complexity 1 21 0 404 155 95 0 chr3 79133328 79133412 -138903746 - L1ME1 LINE L1 -295 5871 5780 907 244 218 16 chr3 79133713 79134163 -138902995 + L2 LINE L2 19 559 -2755 371 318 71 6 chr3 79134183 79134438 -138902720 + L2 LINE L2 1305 1618 -1696 33 25 0 0 chr3 79134683 79134723 -138902435 + AT_rich Low_complexity Low_complexity 1 40 0 202 160 85 21 chr3 79134820 79134914 -138902244 + (TA)n Simple_repeat Simple_repeat 1 100 0 21 57 0 0 chr3 79136367 79136402 -138900756 + AT_rich Low_complexity Low_complexity 1 35 0 202 349 38 61 chr3 79136536 79136627 -138900531 - MER91A DNA MER1_type -67 129 40 2277 114 0 0 chr3 79136627 79136925 -138900233 - AluSx SINE Alu -8 304 7 202 349 38 61 chr3 79136925 79136965 -138900193 - MER91A DNA MER1_type -156 40 1 320 194 0 15 chr3 79137000 79137067 -138900091 - MIR SINE MIR -79 129 64 1851 181 26 18 chr3 79137471 79137836 -138899322 - L1ME LINE L1 -527 5639 5267 7007 117 90 7 chr3 79137836 79138972 -138898186 + Tigger3b DNA MER2_type 2 1231 0 1851 181 26 18 chr3 79138972 79139008 -138898150 - L1ME LINE L1 -899 5267 5233 1327 124 78 47 chr3 79139131 79139388 -138897770 + L1PA16 LINE L1 5893 6157 -9 256 244 37 0 chr3 79139430 79139512 -138897646 + L1MC2 LINE L1 6259 6343 -1 2512 63 0 25 chr3 79139584 79139899 -138897259 + AluY SINE Alu 1 307 -4 294 336 32 0 chr3 79140077 79140202 -138896956 - MIR SINE MIR -8 254 126 730 184 199 15 chr3 79140237 79140433 -138896725 + LTR50 LTR ERVL 24 255 -540 626 253 194 30 chr3 79140481 79140809 -138896349 + LTR50 LTR ERVL 330 464 -59 244 273 13 26 chr3 79141276 79141353 -138895805 + MLT1L LTR MaLR 202 277 -338 1635 160 86 151 chr3 79141511 79141555 -138895603 - MLT2B1 LTR ERVL 0 520 475 351 0 0 0 chr3 79141555 79141594 -138895564 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 1850 152 3 24 chr3 79141595 79141892 -138895266 - AluJo SINE Alu -21 291 1 1635 160 86 151 chr3 79141892 79142401 -138894757 - MLT2B1 LTR ERVL -44 476 1 334 328 17 17 chr3 79142860 79142976 -138894182 + MIR SINE MIR 15 130 -132 457 295 110 26 chr3 79143100 79143446 -138893712 - L1MC4a LINE L1 -1878 5930 5556 2352 106 0 0 chr3 79143633 79143945 -138893213 + AluSx SINE Alu 1 312 0 216 306 148 9 chr3 79143959 79144067 -138893091 + MIR SINE MIR 19 141 -121 2259 104 0 22 chr3 79144571 79144889 -138892269 + AluY SINE Alu 1 311 0 395 230 43 29 chr3 79146679 79146818 -138890340 + MLT1J LTR MaLR 105 245 -266 243 274 88 20 chr3 79146973 79147075 -138890083 - Charlie8 DNA MER1_type -1890 527 419 449 158 49 0 chr3 79147126 79147208 -138889950 - MIR SINE MIR -110 152 67 461 159 11 0 chr3 79147236 79147324 -138889834 + MER53 DNA DNA 101 189 0 180 359 19 0 chr3 79147342 79147395 -138889763 - MIR SINE MIR -202 60 7 25 31 0 0 chr3 79147412 79147444 -138889714 + AT_rich Low_complexity Low_complexity 1 32 0 684 226 128 0 chr3 79147560 79147724 -138889434 - Charlie8 DNA MER1_type -2141 276 92 504 0 0 0 chr3 79147744 79147800 -138889358 + (TA)n Simple_repeat Simple_repeat 2 57 0 2393 82 0 0 chr3 79148590 79148884 -138888274 - AluY SINE Alu -17 294 1 230 289 91 25 chr3 79148902 79149023 -138888135 - MIR SINE MIR -44 218 90 1159 227 19 0 chr3 79149078 79149294 -138887864 - MER58A DNA MER1_type -4 220 1 275 311 47 19 chr3 79149310 79149416 -138887742 + L2 LINE L2 3195 3303 -10 422 316 153 44 chr3 79149576 79149896 -138887262 + L2 LINE L2 2589 2943 -371 308 256 13 13 chr3 79150095 79150173 -138886985 + L2 LINE L2 3231 3308 -5 251 359 0 0 chr3 79150176 79150254 -138886904 - L3 LINE CR1 -1 1576 1499 2113 132 0 16 chr3 79150596 79150900 -138886258 + AluSq SINE Alu 1 299 -14 2535 63 0 0 chr3 79150902 79151203 -138885955 + AluY SINE Alu 1 301 -10 4101 175 71 48 chr3 79151272 79152113 -138885045 - MER21B LTR ERV1 -2 861 1 2032 128 0 0 chr3 79152201 79152508 -138884650 + AluSg SINE Alu 1 307 0 236 280 65 19 chr3 79152510 79152617 -138884541 - MIR SINE MIR -102 160 49 27 0 0 0 chr3 79153292 79153319 -138883839 + AT_rich Low_complexity Low_complexity 1 27 0 1642 165 55 7 chr3 79153710 79153983 -138883175 - AluJo SINE Alu -17 295 10 229 113 0 57 chr3 79154245 79154298 -138882860 + (GGA)n Simple_repeat Simple_repeat 3 52 0 654 261 26 43 chr3 79154521 79154751 -138882407 + L1ME3A LINE L1 5940 6165 -5 196 267 53 40 chr3 79155944 79156019 -138881139 - MIR SINE MIR -1 261 186 266 295 135 51 chr3 79157793 79157949 -138879209 + MIR SINE MIR 20 188 -74 2312 101 0 0 chr3 79158457 79158753 -138878405 + AluSp SINE Alu 1 296 -17 243 0 0 0 chr3 79160427 79160454 -138876704 + (T)n Simple_repeat Simple_repeat 1 27 0 654 229 7 7 chr3 79161174 79161314 -138875844 + Charlie4 DNA MER1_type 1819 1958 -3 2177 105 17 10 chr3 79162233 79162528 -138874630 - AluSx SINE Alu -15 297 1 243 331 152 7 chr3 79162705 79162856 -138874302 - MIR SINE MIR -6 256 84 1541 270 23 15 chr3 79162901 79163375 -138873783 + MER113 DNA MER1_type? 41 518 -3 807 313 56 21 chr3 79163497 79163871 -138873287 + LTR16C LTR ERVL 103 489 -2 1157 298 50 17 chr3 79164803 79165346 -138871812 - L1ME3 LINE L1 -203 5959 5399 1347 296 93 15 chr3 79165354 79166088 -138871070 - L1ME3 LINE L1 -869 5277 4487 429 263 70 0 chr3 79166149 79166263 -138870895 - MLT1G1 LTR MaLR -471 124 3 2060 95 0 67 chr3 79166486 79166801 -138870357 + AluSq SINE Alu 1 294 -19 494 320 35 31 chr3 79167536 79167792 -138869366 - MLT1G1-int LTR MaLR -830 541 285 226 337 51 0 chr3 79167812 79167910 -138869248 - MLT1G1-int LTR MaLR -1221 150 48 1569 269 118 19 chr3 79167974 79168491 -138868667 - MLT1G1 LTR MaLR -12 583 16 614 297 130 16 chr3 79168506 79168847 -138868311 - L2 LINE L2 -239 3074 2690 541 292 64 5 chr3 79169137 79169339 -138867819 + LTR33 LTR ERVL 1 214 -307 455 233 104 36 chr3 79169386 79169579 -138867579 + LTR33 LTR ERVL 308 513 -8 1811 257 57 50 chr3 79170713 79171278 -138865880 - MLT1G1 LTR MaLR -17 578 10 492 243 198 59 chr3 79171297 79171499 -138865659 + MIR SINE MIR 33 262 0 2128 89 7 4 chr3 79171907 79172242 -138864916 + AluSx SINE Alu 1 336 0 306 222 101 10 chr3 79172406 79172505 -138864653 + L1ME4a LINE L1 5977 6084 -37 335 302 66 0 chr3 79173409 79173532 -138863626 + MIR SINE MIR 35 164 -58 1694 202 91 0 chr3 79173592 79173988 -138863170 - Charlie4a DNA MER1_type -60 448 17 225 271 71 129 chr3 79174370 79174510 -138862648 + MER5A DNA MER1_type 57 188 -1 1122 241 5 5 chr3 79175863 79176087 -138861071 + MER58A DNA MER1_type 1 224 0 789 283 68 4 chr3 79176252 79176489 -138860669 - MIR SINE MIR -10 252 1 1984 152 0 0 chr3 79177597 79177893 -138859265 - AluJb SINE Alu -16 296 1 692 195 113 82 chr3 79177951 79178208 -138858950 - Charlie8 DNA MER1_type -2151 266 2 298 307 24 8 chr3 79178230 79178357 -138858801 - MER103 DNA DNA -2 164 36 392 277 0 50 chr3 79178447 79178588 -138858570 - MIR SINE MIR -62 200 67 523 234 109 5 chr3 79179504 79179649 -138857509 + MIR SINE MIR 1 146 -62 1792 198 21 0 chr3 79179660 79179988 -138857170 + L1MB7 LINE L1 5646 5980 -204 243 0 0 0 chr3 79180579 79180606 -138856552 + (T)n Simple_repeat Simple_repeat 1 27 0 474 292 21 14 chr3 79181146 79181290 -138855868 - MIR3 SINE MIR -50 158 14 536 316 43 81 chr3 79181339 79181709 -138855449 + L2 LINE L2 2917 3272 0 886 204 0 6 chr3 79181798 79181960 -138855198 + FRAM SINE Alu 1 160 -16 2186 120 20 0 chr3 79182196 79182495 -138854663 - AluSx SINE Alu -7 305 1 249 252 110 24 chr3 79183091 79183218 -138853940 + MIR3 SINE MIR 68 205 -3 2131 134 28 92 chr3 79183747 79184136 -138853022 + THE1B LTR MaLR 1 364 0 2151 134 3 32 chr3 79184850 79185193 -138851965 - MER1B DNA MER1_type 0 339 7 316 200 21 126 chr3 79185243 79185338 -138851820 - L2 LINE L2 0 3272 3188 323 250 0 0 chr3 79186007 79186079 -138851079 + MER103 DNA DNA 9 80 -86 420 255 0 37 chr3 79186798 79186920 -138850238 + MIR SINE MIR 52 163 -45 47 44 0 0 chr3 79187004 79187072 -138850086 + AT_rich Low_complexity Low_complexity 1 68 0 338 186 206 10 chr3 79187102 79187204 -138849954 - MER5A DNA MER1_type -60 129 8 671 217 29 7 chr3 79188235 79188373 -138848785 - MIR SINE MIR -119 143 3 435 244 142 86 chr3 79188654 79188851 -138848307 - MIR SINE MIR -8 254 47 712 234 66 0 chr3 79189271 79189468 -138847690 - L1MD3 LINE L1 -14 7981 7772 5057 195 33 27 chr3 79190368 79190949 -138846209 - L1MD2 LINE L1 -4 6355 5779 2909 132 16 12 chr3 79190949 79191375 -138845783 - MSTA LTR MaLR 0 428 1 5057 195 33 27 chr3 79191375 79191940 -138845218 - L1MD2 LINE L1 -580 5779 5198 2449 80 0 3 chr3 79192022 79192324 -138844834 - AluSp SINE Alu -12 301 1 1953 170 0 10 chr3 79192326 79192637 -138844521 - AluJo SINE Alu -4 308 1 2459 82 3 0 chr3 79193196 79193499 -138843659 + AluSc SINE Alu 1 304 -5 2742 113 17 97 chr3 79194107 79194457 -138842701 - Tigger3(Golem) DNA MER2_type -4 3024 2730 1450 61 0 6 chr3 79194457 79194638 -138842520 + L1PA7 LINE L1 5962 6141 -13 2742 113 17 97 chr3 79194638 79194825 -138842333 - Tigger3(Golem) DNA MER2_type -298 2730 2530 272 283 0 0 chr3 79194829 79194889 -138842269 - Tigger3(Golem) DNA MER2_type -2969 60 1 409 283 58 7 chr3 79195361 79195499 -138841659 + L2 LINE L2 2652 2796 -518 * 494 265 161 14 chr3 79195496 79195660 -138841498 + L2 LINE L2 2900 3103 -210 2142 96 0 14 chr3 79195660 79195982 -138841176 - AluY SINE Alu 0 311 1 494 265 161 14 chr3 79195982 79196028 -138841130 + L2 LINE L2 3103 3141 -172 198 0 0 0 chr3 79196613 79196635 -138840523 + (A)n Simple_repeat Simple_repeat 1 22 0 361 252 97 0 chr3 79197364 79197467 -138839691 + MER81 DNA DNA 2 114 0 485 292 111 18 chr3 79197691 79197917 -138839241 - MIR SINE MIR -14 248 2 327 305 107 0 chr3 79198605 79198736 -138838422 + Charlie8 DNA MER1_type 95 239 -2178 1217 133 19 29 chr3 79198850 79199060 -138838098 - MER3 DNA MER1_type -1 208 1 204 135 0 0 chr3 79199179 79199216 -138837942 + (GGA)n Simple_repeat Simple_repeat 1 37 0 333 241 8 90 chr3 79199220 79199353 -138837805 - MIR SINE MIR -12 250 129 663 180 0 70 chr3 79199380 79199508 -138837650 + FRAM SINE Alu 35 153 -23 269 311 108 0 chr3 79199527 79199601 -138837557 - MIR SINE MIR -164 98 17 42067 39 1 1 chr3 79200024 79206203 -138830955 + L1PA3 LINE L1 5 6189 0 24 53 0 0 chr3 79207332 79207370 -138829788 + AT_rich Low_complexity Low_complexity 1 38 0 2276 116 0 0 chr3 79207422 79207723 -138829435 - AluSx SINE Alu -11 301 1 1085 280 94 29 chr3 79207850 79208465 -138828693 + L1MB8 LINE L1 5523 6177 -1 591 203 176 14 chr3 79208557 79208705 -138828453 - MER5A DNA MER1_type -2 187 16 1301 267 22 71 chr3 79208861 79209441 -138827717 + L1ME LINE L1 42 593 -5477 1907 174 32 29 chr3 79209443 79209998 -138827160 - MLT2A2 LTR ERVL 0 554 1 621 223 109 55 chr3 79210035 79210237 -138826921 - MER58C DNA MER1_type 0 215 3 1614 210 67 38 chr3 79210535 79211065 -138826093 - MLT1H1 LTR MaLR -5 538 3 490 55 55 0 chr3 79212167 79212240 -138824918 - MADE1 DNA Mariner 0 80 4 2026 112 0 7 chr3 79212430 79212717 -138824441 - AluSg SINE Alu -25 285 1 485 261 106 37 chr3 79213512 79213673 -138823485 - MIR3 SINE MIR -7 201 30 372 315 34 14 chr3 79213922 79214068 -138823090 - MLT1I LTR MaLR -190 219 71 282 56 0 0 chr3 79214884 79214920 -138822238 + (CA)n Simple_repeat Simple_repeat 2 37 0 267 264 69 58 chr3 79214987 79215047 -138822111 - MER5A DNA MER1_type -76 113 50 3669 164 23 67 chr3 79215047 79215239 -138821919 + LTR1 LTR ERV1 1 200 -585 2319 106 0 0 chr3 79215239 79215541 -138821617 + AluSc SINE Alu 1 302 -7 3669 164 23 67 chr3 79215541 79216169 -138820989 + LTR1 LTR ERV1 200 785 0 267 264 69 58 chr3 79216169 79216195 -138820963 - MER5A DNA MER1_type -139 50 26 792 218 139 69 chr3 79216213 79216631 -138820527 + LTR16A1 LTR ERVL 11 457 0 521 247 74 54 chr3 79216745 79216966 -138820192 - MIR SINE MIR -35 227 8 331 265 116 14 chr3 79216961 79217108 -138820050 + MIR SINE MIR 70 231 -31 * 1445 166 52 31 chr3 79217729 79218018 -138819140 - AluJb SINE Alu -17 295 1 186 341 0 0 chr3 79218413 79218457 -138818701 - L2 LINE L2 -19 3253 3210 1067 175 50 0 chr3 79218463 79218663 -138818495 - MER20 DNA MER1_type 0 219 10 2319 82 3 0 chr3 79218667 79218958 -138818200 - AluY SINE Alu -16 295 4 393 320 39 7 chr3 79218977 79219130 -138818028 - MIR SINE MIR -97 165 8 252 313 0 24 chr3 79220214 79220297 -138816861 + MLT1K LTR MaLR 184 264 -324 3500 160 56 44 chr3 79220302 79221103 -138816055 - L1MB8 LINE L1 -62 6116 5306 294 178 68 8 chr3 79221107 79221225 -138815933 + (TA)n Simple_repeat Simple_repeat 2 126 0 2854 195 50 44 chr3 79221279 79221378 -138815780 - L1MB8 LINE L1 -872 5274 5177 1582 201 14 21 chr3 79221378 79221667 -138815491 - AluJo SINE Alu -25 287 1 2854 195 50 44 chr3 79221667 79222454 -138814704 - L1MB8 LINE L1 -969 5177 4383 251 328 53 6 chr3 79223562 79223733 -138813425 + L1ME LINE L1 5676 5854 -267 216 0 0 0 chr3 79223753 79223777 -138813381 + (A)n Simple_repeat Simple_repeat 1 24 0 26 50 0 0 chr3 79224533 79224573 -138812585 + AT_rich Low_complexity Low_complexity 1 40 0 1982 121 0 35 chr3 79224877 79225166 -138811992 - AluSg SINE Alu -31 279 1 2086 181 55 78 chr3 79225343 79225908 -138811250 + MLT2B3 LTR ERVL 1 552 -2 379 222 81 30 chr3 79226003 79226102 -138811056 - MIR SINE MIR -106 156 53 1597 234 90 78 chr3 79226562 79226871 -138810287 + L1ME LINE L1 217 521 -5694 1893 78 44 0 chr3 79226871 79227141 -138810017 + L1PA13 LINE L1 5882 6163 0 1597 234 90 78 chr3 79227141 79227581 -138809577 + L1ME LINE L1 521 954 -5261 1511 153 62 28 chr3 79227581 79227869 -138809289 + AluJb SINE Alu 1 298 -14 1597 234 90 78 chr3 79227869 79227893 -138809265 + L1ME LINE L1 954 976 -5239 2126 156 89 3 chr3 79227893 79228285 -138808873 - MSTB LTR MaLR 0 426 1 1597 234 90 78 chr3 79228285 79228808 -138808350 + L1ME LINE L1 976 1491 -4724 1424 199 10 67 chr3 79228808 79229120 -138808038 + AluJo SINE Alu 1 294 -18 1597 234 90 78 chr3 79229120 79229165 -138807993 + L1ME LINE L1 1491 1534 -4681 2508 65 0 0 chr3 79229165 79229471 -138807687 + AluY SINE Alu 1 306 -5 1597 234 90 78 chr3 79229471 79229511 -138807647 + L1ME LINE L1 1534 1627 -4588 367 143 0 0 chr3 79229619 79229689 -138807469 - AluS SINE Alu -1 299 230 1754 121 4 0 chr3 79229692 79229931 -138807227 + AluSq SINE Alu 17 256 -57 546 174 0 33 chr3 79229950 79230134 -138807024 + (TA)n Simple_repeat Simple_repeat 2 179 0 429 203 0 34 chr3 79230173 79231015 -138806143 + (TA)n Simple_repeat Simple_repeat 1 812 0 3866 254 60 31 chr3 79231076 79233021 -138804137 + L1ME LINE L1 1986 3948 -2267 2691 138 19 2 chr3 79233170 79233591 -138803567 + MSTA LTR MaLR 1 428 0 23 0 0 0 chr3 79233790 79233813 -138803345 + AT_rich Low_complexity Low_complexity 1 23 0 737 215 8 98 chr3 79233996 79234242 -138802916 - MIR SINE MIR -13 249 26 2203 106 0 3 chr3 79234400 79234702 -138802456 - AluSx SINE Alu -11 301 1 314 241 121 92 chr3 79235460 79235601 -138801557 + L2 LINE L2 3169 3313 0 204 275 29 58 chr3 79235840 79235909 -138801249 + MER5B DNA MER1_type 12 78 -100 209 356 144 23 chr3 79235930 79236062 -138801096 + MIR3 SINE MIR 31 178 -30 1253 166 33 15 chr3 79236152 79236423 -138800735 - L1MA7 LINE L1 -15 6276 6001 275 225 0 38 chr3 79236486 79236566 -138800592 + HsTC2 DNA Tc2 1 77 -1821 424 326 54 51 chr3 79236803 79237097 -138800061 + HsTC2 DNA Tc2 488 782 -1116 349 220 30 70 chr3 79237108 79237173 -138799985 + L1MB8 LINE L1 5958 6019 -159 617 215 14 0 chr3 79237173 79237317 -138799841 + L1MA10 LINE L1 6175 6320 -14 349 220 30 70 chr3 79237317 79237351 -138799807 + L1MB8 LINE L1 6019 6053 -125 624 267 102 22 chr3 79237474 79237699 -138799459 - MIR SINE MIR -7 255 13 700 71 0 103 chr3 79237839 79237965 -138799193 + L1PB1 LINE L1 5702 5814 -337 209 109 78 16 chr3 79237965 79238029 -138799129 + (TA)n Simple_repeat Simple_repeat 1 68 0 2680 78 8 11 chr3 79238032 79238403 -138798755 + L1PB1 LINE L1 5782 6151 0 2576 64 3 0 chr3 79238596 79238908 -138798250 - AluSp SINE Alu 0 313 1 291 212 0 0 chr3 79239030 79239096 -138798062 - L1MB3 LINE L1 -22 6161 6096 577 313 17 17 chr3 79239144 79239377 -138797781 + MIR SINE MIR 14 246 -16 299 132 19 0 chr3 79240066 79240119 -138797039 - MER5A DNA MER1_type -93 96 43 627 181 13 28 chr3 79240288 79240352 -138796806 + GA-rich Low_complexity Low_complexity 1 64 -473 1575 194 17 7 chr3 79240352 79240651 -138796507 + AluJb SINE Alu 3 304 -8 627 181 13 28 chr3 79240651 79240834 -138796324 + GA-rich Low_complexity Low_complexity 64 537 0 596 318 42 10 chr3 79242118 79242310 -138794848 - MIR SINE MIR -47 215 18 1069 217 120 11 chr3 79242977 79243253 -138793905 + MER2 DNA MER2_type 40 345 0 285 240 62 10 chr3 79243357 79243453 -138793705 + LTR67 LTR ERVL 457 557 0 408 302 94 19 chr3 79243661 79243820 -138793338 + MIR3 SINE MIR 10 180 -28 2380 90 0 6 chr3 79244357 79244668 -138792490 - AluSq SINE Alu -4 309 1 650 328 34 4 chr3 79245182 79245417 -138791741 - MIR SINE MIR -18 244 3 199 170 94 57 chr3 79245696 79245749 -138791409 + L2 LINE L2 2748 2802 -512 713 198 116 6 chr3 79246803 79246975 -138790183 + MER3 DNA MER1_type 10 200 -9 3482 185 19 68 chr3 79247038 79248390 -138788768 - L1MB8 LINE L1 0 6178 4901 1065 144 0 0 chr3 79248501 79248682 -138788476 - L1MA5 LINE L1 -5 6295 6115 24264 130 17 71 chr3 79248702 79253690 -138783468 + L1PA8 LINE L1 12 4728 -1418 4262 70 20 33 chr3 79253690 79254840 -138782318 + MER11A LTR ERVK 1 1266 0 6540 89 4 0 chr3 79254840 79256273 -138780885 + L1PA8 LINE L1 4723 6169 -3 952 160 0 5 chr3 79256310 79256497 -138780661 - L1MA5 LINE L1 -175 6125 5940 1758 194 8 25 chr3 79256502 79256904 -138780254 - L1MB8 LINE L1 -1235 4911 4517 1575 190 32 2 chr3 79257119 79257525 -138779633 - L1MB8 LINE L1 -2851 3295 2878 4419 132 4 33 chr3 79257593 79257686 -138779472 + L1PA13 LINE L1 5420 5514 -649 2275 135 5 27 chr3 79257686 79258056 -138779102 + THE1B LTR MaLR 3 364 0 4419 132 4 33 chr3 79258056 79258338 -138778820 + L1PA13 LINE L1 5514 5803 -360 2161 126 7 0 chr3 79258338 79258631 -138778527 + AluSx SINE Alu 1 295 -17 4419 132 4 33 chr3 79258631 79259020 -138778138 + L1PA13 LINE L1 5803 6163 0 311 284 194 45 chr3 79259134 79259289 -138777869 - MER5A DNA MER1_type -3 186 9 980 119 11 40 chr3 79259632 79259809 -138777349 - THE1B LTR MaLR -54 310 139 491 276 8 0 chr3 79259810 79259937 -138777221 - MIR SINE MIR -1 261 134 214 342 38 43 chr3 79260401 79260585 -138776573 + L2 LINE L2 2839 3021 -251 182 322 52 61 chr3 79260981 79261096 -138776062 + L2 LINE L2 3154 3267 -5 234 305 17 0 chr3 79261532 79261591 -138775567 - L2 LINE L2 -2 3270 3211 554 279 128 78 chr3 79261872 79261956 -138775202 + L2 LINE L2 2809 2887 -426 825 123 0 74 chr3 79261956 79262119 -138775039 - L1PA6 LINE L1 0 6154 6004 554 279 128 78 chr3 79262119 79262511 -138774647 + L2 LINE L2 2887 3309 -4 1504 152 4 8 chr3 79262513 79262750 -138774408 - AluSx SINE Alu -76 236 1 345 292 72 30 chr3 79264144 79264380 -138772778 + L1ME LINE L1 5543 5788 -333 22 56 0 0 chr3 79264489 79264525 -138772633 + AT_rich Low_complexity Low_complexity 1 36 0 3062 192 29 3 chr3 79264645 79265291 -138771867 - L1MB7 LINE L1 0 6184 5522 1924 144 3 6 chr3 79265336 79265677 -138771481 + L1MA4 LINE L1 5959 6298 -2 530 253 90 84 chr3 79265819 79266151 -138771007 + L1MEd LINE L1 550 883 -5236 5478 239 54 51 chr3 79267701 79268928 -138768230 + L1M4 LINE L1 23 1245 -5401 2306 80 10 13 chr3 79268928 79269240 -138767918 + AluY SINE Alu 1 311 0 5478 239 54 51 chr3 79269240 79269833 -138767325 + L1M4 LINE L1 1245 1835 -4811 2401 90 0 0 chr3 79269833 79270133 -138767025 + AluY SINE Alu 1 300 -11 5478 239 54 51 chr3 79270133 79270266 -138766892 + L1M4 LINE L1 1835 1966 -4680 2153 142 7 0 chr3 79270266 79270575 -138766583 + AluSx SINE Alu 1 311 -1 5478 239 54 51 chr3 79270575 79270830 -138766328 + L1M4 LINE L1 1966 2219 -4427 1582 162 89 0 chr3 79270830 79271089 -138766069 + AluSg SINE Alu 1 282 -28 5478 239 54 51 chr3 79271089 79271568 -138765590 + L1M4 LINE L1 2219 2718 -3928 1066 97 13 0 chr3 79271630 79271785 -138765373 + L1PA4 LINE L1 7 163 -5983 * 7743 66 5 0 chr3 79271765 79272811 -138764347 + L1PA4 LINE L1 495 1545 -4601 18670 36 3 1 chr3 79272811 79275895 -138761263 + L1PA4 LINE L1 3085 6152 -3 21 0 0 0 chr3 79275895 79275916 -138761242 + AT_rich Low_complexity Low_complexity 1 21 0 2289 217 25 62 chr3 79275931 79276520 -138760638 + L1M4 LINE L1 2813 3423 -3221 2041 118 47 10 chr3 79276520 79276816 -138760342 - AluSq SINE Alu -6 307 1 585 101 10 20 chr3 79276823 79276922 -138760236 - L1PA13 LINE L1 -4 6159 6062 2289 217 25 62 chr3 79276922 79277227 -138759931 + L1M4 LINE L1 3429 3935 -2709 2520 60 0 0 chr3 79277227 79277527 -138759631 + AluY SINE Alu 1 300 -11 2289 217 25 62 chr3 79277527 79277612 -138759546 + L1M4 LINE L1 3935 4022 -2622 * 15421 162 80 39 chr3 79277611 79277643 -138759515 + L1MA2 LINE L1 15 44 -7521 1833 144 146 39 chr3 79277643 79278026 -138759132 - MSTA LTR MaLR 0 428 5 15421 162 80 39 chr3 79278026 79278938 -138758220 + L1MA2 LINE L1 44 917 -6648 2131 130 0 10 chr3 79278938 79279245 -138757913 + AluSx SINE Alu 1 304 -8 15421 162 80 39 chr3 79279245 79282498 -138754660 + L1MA2 LINE L1 917 4072 -3493 6329 144 12 5 chr3 79282495 79283915 -138753243 + L1MA2 LINE L1 6296 7723 0 * 3840 244 34 4 chr3 79283931 79285079 -138752079 + L1M4 LINE L1 4013 5194 -1450 744 145 41 7 chr3 79285087 79285232 -138751926 + L1MB7 LINE L1 6035 6184 0 319 355 45 7 chr3 79286427 79286582 -138750576 - MIR SINE MIR -99 163 3 181 265 20 0 chr3 79286695 79286744 -138750414 - L2 LINE L2 -1 3312 3263 432 295 74 0 chr3 79288396 79288518 -138748640 + MIR SINE MIR 30 160 -102 31 0 0 0 chr3 79290005 79290036 -138747122 + AT_rich Low_complexity Low_complexity 1 31 0 1156 164 0 43 chr3 79290489 79290721 -138746437 - L1MB8 LINE L1 -5 6173 5952 758 259 74 0 chr3 79290863 79291079 -138746079 + MIR SINE MIR 31 262 0 493 269 66 11 chr3 79291530 79291712 -138745446 - LTR16C LTR ERVL 0 491 300 536 285 171 5 chr3 79292077 79292270 -138744888 - MIR SINE MIR -3 259 35 2285 100 0 3 chr3 79292549 79292849 -138744309 - AluSg SINE Alu -11 299 1 2872 111 26 0 chr3 79292954 79293377 -138743781 - MER57B LTR ERV1 0 434 1 1282 194 31 3 chr3 79293455 79293748 -138743410 + MER33 DNA MER1_type 18 318 -6 388 289 260 4 chr3 79293757 79294003 -138743155 + L2 LINE L2 2827 3135 -178 422 169 133 0 chr3 79294012 79294095 -138743063 + FRAM SINE Alu 3 96 -80 235 324 15 0 chr3 79296338 79296406 -138740752 - L2 LINE L2 -4 3268 3200 1339 198 102 18 chr3 79296409 79296831 -138740327 + MER39 LTR ERV1 6 627 -80 204 243 0 57 chr3 79296893 79296963 -138740195 - L2 LINE L2 -67 3205 3140 22 56 0 0 chr3 79296966 79297002 -138740156 + AT_rich Low_complexity Low_complexity 1 36 0 298 161 17 28 chr3 79297608 79297788 -138739370 + (TA)n Simple_repeat Simple_repeat 2 179 0 207 0 0 0 chr3 79297892 79297915 -138739243 + (CA)n Simple_repeat Simple_repeat 2 24 0 6139 152 34 9 chr3 79298371 79300009 -138737149 + L1MA8 LINE L1 4104 5787 -504 2978 114 9 0 chr3 79300009 79300446 -138736712 + L1PB1 LINE L1 5709 6150 -1 2589 148 22 18 chr3 79300462 79300969 -138736189 + L1MA8 LINE L1 5771 6279 -12 193 29 59 0 chr3 79301317 79301351 -138735807 + (CAA)n Simple_repeat Simple_repeat 1 36 0 322 233 12 23 chr3 79301543 79301629 -138735529 + L2 LINE L2 3227 3311 -2 259 152 15 15 chr3 79302611 79302677 -138734481 + (TA)n Simple_repeat Simple_repeat 2 67 0 21 0 0 0 chr3 79302937 79302958 -138734200 + AT_rich Low_complexity Low_complexity 1 21 0 274 243 14 0 chr3 79303044 79303114 -138734044 + L2 LINE L2 3227 3297 -16 863 202 10 24 chr3 79303216 79303424 -138733734 - MER20 DNA MER1_type 0 219 15 1037 251 125 22 chr3 79303425 79304035 -138733123 + L2 LINE L2 2451 3313 0 2287 137 29 10 chr3 79304067 79304476 -138732682 - L1MB2 LINE L1 -7 6164 5748 1550 144 0 4 chr3 79304478 79304741 -138732417 - L1MB2 LINE L1 -545 5638 5377 1731 198 40 8 chr3 79306489 79306843 -138730315 - MLT1A1 LTR MaLR 0 365 1 204 347 40 0 chr3 79307535 79307610 -138729548 - MIR SINE MIR -67 141 64 506 229 48 0 chr3 79307837 79307942 -138729216 - FLAM_A SINE Alu -32 110 1 339 216 62 0 chr3 79309163 79309260 -138727898 - MER117 DNA MER1_type -77 120 18 430 265 71 41 chr3 79310261 79310431 -138726727 + MLT2E LTR ERVL 34 208 -420 279 229 57 33 chr3 79310989 79311100 -138726058 + MLT1I LTR MaLR 266 387 -59 944 169 76 0 chr3 79311897 79312069 -138725089 - MER5A DNA MER1_type -4 185 1 315 0 0 0 chr3 79312533 79312568 -138724590 + (TG)n Simple_repeat Simple_repeat 1 35 0 2279 69 7 10 chr3 79312946 79313249 -138723909 + L1PA7 LINE L1 5853 6154 0 283 123 38 123 chr3 79313276 79313382 -138723776 + MER53 DNA DNA 93 189 0 328 274 83 39 chr3 79313409 79313639 -138723519 + L2 LINE L2 2822 3061 -211 1224 126 102 10 chr3 79313685 79313891 -138723267 + MER30 DNA MER1_type 4 228 -2 202 266 25 76 chr3 79313951 79314030 -138723128 + L2 LINE L2 3232 3306 -7 2714 229 207 14 chr3 79316377 79317485 -138719673 - L1MC4 LINE L1 -136 7906 6586 487 237 26 97 chr3 79317489 79317717 -138719441 - L1MC4a LINE L1 -1201 6607 6453 341 326 117 28 chr3 79318290 79318581 -138718577 - L1MC4a LINE L1 -1828 5980 5664 380 284 14 21 chr3 79319850 79319991 -138717167 + LTR33 LTR ERVL 382 521 0 290 353 136 14 chr3 79320625 79320846 -138716312 + L2 LINE L2 2654 2901 -413 321 372 35 0 chr3 79323292 79323405 -138713753 - L2 LINE L2 -17 3255 3139 2256 111 3 3 chr3 79323449 79323755 -138713403 - AluSx SINE Alu 0 312 7 222 296 0 49 chr3 79324849 79324930 -138712228 - MIR3 SINE MIR -7 201 125 374 227 169 17 chr3 79325405 79325577 -138711581 - MER102b DNA MER1_type 0 341 144 453 321 51 5 chr3 79325720 79325935 -138711223 + MIR SINE MIR 14 238 -24 207 0 0 0 chr3 79325940 79325963 -138711195 + (CAT)n Simple_repeat Simple_repeat 2 24 0 2379 63 0 7 chr3 79326099 79326398 -138710760 - AluY SINE Alu -14 297 1 21 0 0 0 chr3 79327172 79327193 -138709965 + AT_rich Low_complexity Low_complexity 1 21 0 317 266 86 36 chr3 79328547 79328686 -138708472 + MIR SINE MIR 117 262 0 463 301 14 21 chr3 79328887 79329030 -138708128 + MIR SINE MIR 49 190 -72 2367 86 3 7 chr3 79329378 79329680 -138707478 + AluSx SINE Alu 1 301 -11 2279 74 0 13 chr3 79329829 79330128 -138707030 - AluY SINE Alu -15 296 2 766 62 0 0 chr3 79330130 79330226 -138706932 - AluSc SINE Alu -213 96 1 318 242 144 26 chr3 79330226 79330379 -138706779 + MIR SINE MIR 92 262 0 379 299 0 26 chr3 79330603 79330720 -138706438 + MER81 DNA DNA 1 114 0 2192 161 53 24 chr3 79330722 79331138 -138706020 - MSTA LTR MaLR 0 428 1 194 298 29 10 chr3 79331169 79331273 -138705885 - L2 LINE L2 -508 2806 2701 2556 123 41 5 chr3 79331943 79332356 -138704802 + MSTA LTR MaLR 1 428 0 2008 162 14 3 chr3 79332394 79332753 -138704405 + MER47A DNA MER2_type 1 363 -3 1763 205 0 0 chr3 79332852 79333159 -138703999 - AluJo SINE Alu -5 307 1 773 249 46 9 chr3 79333159 79333376 -138703782 + MIR SINE MIR 7 231 -31 2190 115 3 3 chr3 79333647 79333951 -138703207 + AluSx SINE Alu 1 304 -8 601 311 66 22 chr3 79333996 79334269 -138702889 - LTR16A LTR ERVL -144 306 22 195 391 0 17 chr3 79334440 79334555 -138702603 + MIR SINE MIR 150 262 0 2376 92 0 0 chr3 79335024 79335317 -138701841 - AluSx SINE Alu -19 293 1 372 22 0 0 chr3 79335412 79335457 -138701701 + (CA)n Simple_repeat Simple_repeat 2 46 0 352 247 32 21 chr3 79335585 79335678 -138701480 + L2 LINE L2 3218 3311 -2 217 276 216 15 chr3 79335682 79335816 -138701342 - MIR3 SINE MIR -13 195 35 24 32 0 0 chr3 79336223 79336254 -138700904 + AT_rich Low_complexity Low_complexity 1 31 0 1996 129 41 14 chr3 79336446 79336741 -138700417 - AluSx SINE Alu -9 303 1 401 335 45 22 chr3 79337690 79337869 -138699289 - MIR SINE MIR -75 187 5 285 235 66 8 chr3 79338353 79338477 -138698681 - MIR SINE MIR -64 144 10 1153 164 31 0 chr3 79339078 79339273 -138697885 - MER20 DNA MER1_type -18 201 1 584 286 64 6 chr3 79339530 79339701 -138697457 + MLT1J2 LTR MaLR 1 181 -269 257 211 39 0 chr3 79339758 79339810 -138697348 - MER58 DNA MER1_type 0 2420 2367 879 241 0 5 chr3 79340294 79340485 -138696673 - L1PB4 LINE L1 -8 6148 5959 195 42 0 0 chr3 79340797 79340821 -138696337 + (A)n Simple_repeat Simple_repeat 1 24 0 572 232 2 28 chr3 79340881 79341160 -138695998 - MLT1A2 LTR MaLR 0 488 174 3930 147 40 77 chr3 79341217 79342115 -138695043 - L1MA9 LINE L1 0 6312 5448 752 205 43 6 chr3 79342333 79342494 -138694664 - MLT1A2 LTR MaLR -207 167 1 2075 103 0 81 chr3 79342684 79343004 -138694154 + AluSg SINE Alu 2 295 -15 1615 167 49 71 chr3 79343173 79343256 -138693902 + MER46B DNA MER2_type 4 87 -2644 1327 55 12 0 chr3 79343256 79343421 -138693737 + L1PA7 LINE L1 5986 6152 -2 1615 167 49 71 chr3 79343421 79343703 -138693455 + MER46B DNA MER2_type 87 236 0 1806 175 0 0 chr3 79343736 79344033 -138693125 + AluJo SINE Alu 1 297 -15 428 264 41 59 chr3 79344174 79344348 -138692810 - L1MC4 LINE L1 -32 8010 7839 2816 13 0 0 chr3 79344348 79344654 -138692504 - AluYb8 SINE Alu -12 306 1 428 264 41 59 chr3 79344654 79344699 -138692459 - L1MC4 LINE L1 -203 7839 7795 660 174 174 17 chr3 79345914 79346086 -138691072 - MER20 DNA MER1_type -20 199 1 1161 283 30 8 chr3 79346266 79346627 -138690531 + MLT1I LTR MaLR 8 376 -33 775 282 20 44 chr3 79346955 79347207 -138689951 - MIR SINE MIR 0 262 17 265 301 0 12 chr3 79347663 79347746 -138689412 + MLT1F LTR MaLR 4 85 -457 1964 185 166 0 chr3 79348118 79348551 -138688607 - MLT1D LTR MaLR 0 505 1 1029 198 35 0 chr3 79349152 79349354 -138687804 + MER20 DNA MER1_type 6 214 -5 414 0 0 0 chr3 79350753 79350799 -138686359 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 25 0 0 0 chr3 79351746 79351771 -138685387 + AT_rich Low_complexity Low_complexity 1 25 0 478 147 105 0 chr3 79352497 79352592 -138684566 + MER53 DNA DNA 2 106 -83 193 349 0 45 chr3 79353164 79353230 -138683928 - L2 LINE L2 -22 3291 3229 221 322 48 20 chr3 79353282 79353428 -138683730 - MIR SINE MIR -89 173 24 885 233 30 0 chr3 79355418 79355620 -138681538 - MER3 DNA MER1_type -1 208 1 522 266 40 71 chr3 79356393 79356619 -138680539 - MIR SINE MIR -26 236 18 221 0 0 33 chr3 79356681 79356711 -138680447 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2001 110 55 0 chr3 79358477 79358768 -138678390 - AluSx SINE Alu -5 307 1 1738 147 103 12 chr3 79361250 79361569 -138675589 + MER7A DNA MER2_type 1 346 0 204 216 39 20 chr3 79361583 79361634 -138675524 + CT-rich Low_complexity Low_complexity 4 55 0 1435 164 72 0 chr3 79361636 79361886 -138675272 - AluSx SINE Alu -5 307 40 195 276 81 35 chr3 79362274 79362361 -138674797 - MIR3 SINE MIR -8 200 110 2316 104 3 0 chr3 79363287 79363586 -138673572 - AluSq SINE Alu -13 300 1 1304 176 107 13 chr3 79367431 79367734 -138669424 - MSTB LTR MaLR 0 432 3 1321 262 161 19 chr3 79367736 79368455 -138668703 + L2 LINE L2 2478 3313 0 523 187 194 42 chr3 79368464 79368636 -138668522 - L1MEc LINE L1 -2898 3317 3172 1732 140 19 68 chr3 79368636 79368957 -138668201 - AluJb SINE Alu -7 305 1 523 187 194 42 chr3 79368957 79369068 -138668090 - L1MEc LINE L1 -3043 3172 2991 1718 275 60 24 chr3 79369093 79369912 -138667246 - L1MEc LINE L1 -3873 2523 1676 2682 180 104 7 chr3 79469924 79470503 -138566655 + L1MD2 LINE L1 5713 6347 -12 22 0 0 73 chr3 79470708 79470730 -138566428 + AT_rich Low_complexity Low_complexity 1 20 -18 2622 45 0 0 chr3 79470730 79471038 -138566120 + AluY SINE Alu 1 308 -3 22 0 0 73 chr3 79471038 79471056 -138566102 + AT_rich Low_complexity Low_complexity 20 38 0 6697 211 19 8 chr3 79471230 79472249 -138564909 - L1PA16 LINE L1 -2 6164 5158 306 0 0 0 chr3 79472249 79472283 -138564875 + (TTG)n Simple_repeat Simple_repeat 3 36 0 6697 211 19 8 chr3 79472283 79473664 -138563494 - L1PA16 LINE L1 -1008 5158 3784 531 194 88 38 chr3 79473774 79473934 -138563224 + L1ME1 LINE L1 5738 5905 -261 4402 239 38 29 chr3 79473935 79473962 -138563196 + L1ME LINE L1 2714 2739 -3407 2289 178 21 23 chr3 79473962 79474389 -138562769 + MSTB LTR MaLR 1 426 0 4402 239 38 29 chr3 79474389 79475798 -138561360 + L1ME LINE L1 2739 4162 -1984 401 104 30 0 chr3 79475806 79475873 -138561285 + GA-rich Low_complexity Low_complexity 2 70 0 3940 200 38 60 chr3 79475873 79477114 -138560044 + L1ME LINE L1 4146 5359 -787 1706 166 66 3 chr3 79477868 79478187 -138558971 + MER44D DNA MER2_type 1 609 0 27 62 0 0 chr3 79478680 79478728 -138558430 + AT_rich Low_complexity Low_complexity 1 48 0 270 261 0 0 chr3 79478787 79478852 -138558306 + L1ME LINE L1 5549 5613 -508 461 169 11 34 chr3 79479651 79479740 -138557418 + MER20 DNA MER1_type 131 217 -2 2167 138 0 0 chr3 79479808 79480120 -138557038 + AluSq SINE Alu 1 312 -1 967 223 105 56 chr3 79480187 79480614 -138556544 + HAL1b LINE L1 71 518 -830 231 260 42 21 chr3 79480629 79480725 -138556433 + L1ME LINE L1 5725 5822 -299 1013 204 43 9 chr3 79480953 79481164 -138555994 + MER20 DNA MER1_type 2 219 0 22 0 0 0 chr3 79481283 79481305 -138555853 + AT_rich Low_complexity Low_complexity 1 22 0 346 115 0 0 chr3 79482350 79482411 -138554747 - Alu SINE Alu 0 302 242 984 83 0 0 chr3 79482413 79482534 -138554624 - AluY SINE Alu -190 121 1 5883 221 71 14 chr3 79483400 79484877 -138552281 - L1MDa LINE L1 -4890 1650 89 307 177 139 0 chr3 79485606 79485685 -138551473 + MSTA LTR MaLR 114 203 -225 2133 124 0 3 chr3 79485686 79486032 -138551126 - L1P LINE L1 -3014 3132 2788 17474 40 6 2 chr3 79486032 79488975 -138548183 + L1PA5 LINE L1 3206 6153 -1 424 120 110 30 chr3 79488975 79489075 -138548083 + MSTA LTR MaLR 189 296 -132 1891 161 39 49 chr3 79489087 79489646 -138547512 - MLT2A2 LTR ERVL 0 554 1 732 127 0 0 chr3 79489646 79489749 -138547409 + MSTA LTR MaLR 324 426 -2 1690 285 67 30 chr3 79489767 79490057 -138547101 - L2 LINE L2 -606 2708 2430 1791 161 68 39 chr3 79490057 79490442 -138546716 - MSTD LTR MaLR 0 396 1 1690 285 67 30 chr3 79490442 79490720 -138546438 - L2 LINE L2 -884 2430 2119 294 250 50 50 chr3 79490746 79490866 -138546292 + MIR SINE MIR 130 249 -13 237 341 15 45 chr3 79490913 79491045 -138546113 - MIR3 SINE MIR -72 136 9 203 241 93 19 chr3 79491057 79491111 -138546047 - L2 LINE L2 -73 3199 3142 408 302 6 76 chr3 79491716 79491902 -138545256 - MIR SINE MIR -62 146 22 2200 127 7 0 chr3 79492062 79492370 -138544788 + AluSx SINE Alu 1 310 -2 6268 171 28 28 chr3 79494147 79494532 -138542626 - L1MC3 LINE L1 0 7785 7401 1634 144 93 37 chr3 79494532 79494887 -138542271 + THE1C LTR MaLR 1 375 0 6268 171 28 28 chr3 79494887 79495433 -138541725 - L1MC3 LINE L1 -384 7401 6851 264 59 0 0 chr3 79495433 79495467 -138541691 + (TG)n Simple_repeat Simple_repeat 2 35 0 6268 171 28 28 chr3 79495467 79495863 -138541295 - L1MC3 LINE L1 -933 6852 6457 376 296 23 0 chr3 79495872 79495960 -138541198 + MER5B DNA MER1_type 89 178 0 331 297 91 6 chr3 79496175 79496350 -138540808 + L3b LINE CR1 1214 1403 -180 1413 380 54 0 chr3 79496537 79496905 -138540253 + MSTD LTR MaLR 6 393 -3 405 305 97 78 chr3 79497120 79497441 -138539717 + L2 LINE L2 2839 3165 -107 667 207 0 33 chr3 79497462 79497612 -138539546 - MLT1G1 LTR MaLR 0 595 451 619 214 48 48 chr3 79497709 79497915 -138539243 - MLT1G LTR MaLR -377 213 8 427 232 9 27 chr3 79498519 79498631 -138538527 - MIR SINE MIR -10 252 143 542 184 10 0 chr3 79498635 79498733 -138538425 + MLT1E LTR MaLR 2 100 -493 1071 186 81 9 chr3 79498814 79499071 -138538087 + MLT1E LTR MaLR 317 555 0 721 307 40 24 chr3 79499153 79499404 -138537754 - MIR SINE MIR 0 262 8 182 250 0 50 chr3 79500102 79500162 -138536996 - L2 LINE L2 -87 3226 3170 408 263 0 0 chr3 79500721 79500820 -138536338 - MER103 DNA DNA -50 116 18 231 284 9 46 chr3 79503971 79504047 -138533111 + (TA)n Simple_repeat Simple_repeat 2 74 -32 1684 170 28 21 chr3 79504047 79504335 -138532823 + AluJo SINE Alu 1 290 -22 231 284 9 46 chr3 79504335 79504367 -138532791 + (TA)n Simple_repeat Simple_repeat 74 106 0 309 26 0 0 chr3 79504367 79504405 -138532753 + (CA)n Simple_repeat Simple_repeat 2 39 0 657 302 14 36 chr3 79504465 79504740 -138532418 - LTR16C LTR ERVL -222 269 1 911 166 5 5 chr3 79504930 79505117 -138532041 + L1MA4 LINE L1 6108 6294 -6 2238 90 27 0 chr3 79505815 79506115 -138531043 + AluY SINE Alu 1 308 -3 356 354 86 6 chr3 79507265 79507440 -138529718 + MIR3 SINE MIR 16 204 -4 450 338 59 5 chr3 79508185 79508407 -138528751 - L2 LINE L2 -862 2452 2219 245 218 18 52 chr3 79508507 79508604 -138528554 - MIR SINE MIR -62 146 83 467 261 6 57 chr3 79509693 79509869 -138527289 - MER69A DNA AcHobo -10 167 1 340 229 185 57 chr3 79509949 79510106 -138527052 - MIR SINE MIR -33 229 53 1103 129 23 51 chr3 79510260 79510477 -138526681 - MER20 DNA MER1_type -5 214 4 1565 171 31 21 chr3 79510896 79511183 -138525975 - AluJo SINE Alu 0 312 23 317 249 71 30 chr3 79511559 79511728 -138525430 + MLT1J LTR MaLR 1 176 -335 22 35 0 0 chr3 79513160 79513189 -138523969 + AT_rich Low_complexity Low_complexity 1 29 0 1730 203 0 13 chr3 79514311 79514616 -138522542 - AluJo SINE Alu -11 301 1 346 310 57 23 chr3 79514928 79515216 -138521942 - L1ME LINE L1 -462 5659 5353 419 287 107 66 chr3 79515829 79516195 -138520963 + L2 LINE L2 2853 3233 -80 263 283 30 12 chr3 79516746 79516912 -138520246 + (TA)n Simple_repeat Simple_repeat 1 169 0 2132 141 0 0 chr3 79517208 79517514 -138519644 - AluSx SINE Alu -6 306 1 2272 111 48 11 chr3 79518491 79518842 -138518316 - THE1B LTR MaLR 0 364 1 215 242 32 0 chr3 79519018 79519080 -138518078 + CT-rich Low_complexity Low_complexity 2 65 0 561 193 0 9 chr3 79524758 79524867 -138512291 + Charlie1 DNA MER1_type 1422 1529 -1232 900 208 0 0 chr3 79524868 79525022 -138512136 - FRAM SINE Alu -20 156 3 29835 44 1 2 chr3 79525075 79528933 -138508225 + L1P LINE L1 1 3854 -2292 519 303 109 9 chr3 79529883 79530094 -138507064 + MIR SINE MIR 20 251 -11 520 231 201 0 chr3 79530152 79530321 -138506837 - MER3 DNA MER1_type 0 209 7 221 345 136 0 chr3 79530372 79530482 -138506676 + MIR SINE MIR 65 189 -73 939 172 146 0 chr3 79530943 79531135 -138506023 - MER58A DNA MER1_type -2 222 3 364 35 88 18 chr3 79531550 79531607 -138505551 - THE1C LTR MaLR -326 49 1 215 286 29 0 chr3 79531789 79531859 -138505299 + CT-rich Low_complexity Low_complexity 2 73 0 246 329 72 0 chr3 79531870 79532022 -138505136 + MLT1K LTR MaLR 290 452 -136 22 0 0 0 chr3 79533413 79533435 -138503723 + AT_rich Low_complexity Low_complexity 1 22 0 302 349 18 28 chr3 79534980 79535089 -138502069 + MIR SINE MIR 19 126 -136 788 230 61 0 chr3 79535129 79535325 -138501833 - MIR SINE MIR -3 259 52 558 239 93 74 chr3 79535540 79535748 -138501410 + MLT1J1 LTR MaLR 58 261 -185 1822 188 0 0 chr3 79535748 79536052 -138501106 - AluJb SINE Alu -8 304 1 558 239 93 74 chr3 79536052 79536242 -138500916 + MLT1J1 LTR MaLR 261 446 0 1754 268 43 32 chr3 79536257 79536844 -138500314 + MLT1E LTR MaLR 1 593 0 1973 126 7 3 chr3 79537055 79537340 -138499818 - AluSx SINE Alu -22 290 5 245 153 0 17 chr3 79538786 79538845 -138498313 + GA-rich Low_complexity Low_complexity 2 59 0 947 129 43 0 chr3 79539129 79539269 -138497889 + AluJb SINE Alu 131 276 -36 257 0 0 29 chr3 79539298 79539332 -138497826 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 25 51 0 0 chr3 79539886 79539925 -138497233 + AT_rich Low_complexity Low_complexity 1 39 0 1952 157 3 3 chr3 79540826 79541132 -138496026 - AluSx SINE Alu -1 311 6 264 333 20 0 chr3 79541322 79541421 -138495737 - MER5A DNA MER1_type -63 126 26 264 258 0 0 chr3 79541433 79541495 -138495663 - MIR SINE MIR -97 165 104 183 42 0 0 chr3 79542427 79542451 -138494707 + (CAAAAA)n Simple_repeat Simple_repeat 3 26 0 236 293 86 60 chr3 79544196 79544368 -138492790 + MIR SINE MIR 17 189 -63 814 261 66 0 chr3 79544496 79544707 -138492451 - MIR SINE MIR -33 229 5 398 212 0 0 chr3 79544776 79544861 -138492297 + MER103 DNA DNA 3 87 -79 312 296 74 26 chr3 79546625 79546944 -138490214 - LTR16B LTR ERVL -13 451 44 3423 124 21 0 chr3 79547429 79547963 -138489195 - L1PA13 LINE L1 -5 6158 5614 23 0 0 0 chr3 79548007 79548030 -138489128 + AT_rich Low_complexity Low_complexity 1 23 0 377 258 39 0 chr3 79548980 79549108 -138488050 - LTR33 LTR ERVL -53 468 336 890 294 42 7 chr3 79552352 79552641 -138484517 + MER58B DNA MER1_type 4 302 -39 355 261 176 0 chr3 79553055 79553174 -138483984 - MIR SINE MIR -4 258 119 273 343 139 0 chr3 79553163 79553300 -138483858 + MIR3 SINE MIR 42 197 -11 * 903 254 47 0 chr3 79554190 79554403 -138482755 + MER58A DNA MER1_type 2 224 0 490 205 16 25 chr3 79554634 79554756 -138482402 - MER117 DNA MER1_type -72 125 5 1943 41 4 37 chr3 79555938 79556184 -138480974 - AluY SINE Alu -11 300 63 1588 149 49 87 chr3 79557336 79557488 -138479670 + THE1C LTR MaLR 1 157 -218 2220 94 3 16 chr3 79557488 79557795 -138479363 - AluY SINE Alu -8 303 1 1588 149 49 87 chr3 79557795 79558032 -138479126 + THE1C LTR MaLR 157 375 0 9351 130 30 24 chr3 79558034 79559600 -138477558 + THE1C-int LTR MaLR 3 1578 -2 1079 136 177 153 chr3 79559602 79559762 -138477396 + MSTA LTR MaLR 1 156 -272 7811 93 24 12 chr3 79559762 79561677 -138475481 + L1PA8 LINE L1 4243 6172 0 1079 136 177 153 chr3 79561677 79561934 -138475224 + MSTA LTR MaLR 156 428 0 544 248 81 10 chr3 79562187 79562385 -138474773 - L1MDa LINE L1 -6240 300 89 991 249 39 68 chr3 79563108 79563521 -138473637 - LTR16A1 LTR ERVL 0 457 57 430 297 28 124 chr3 79563576 79564077 -138473081 - L2 LINE L2 -38 3275 2823 1092 284 97 8 chr3 79564085 79564570 -138472588 - MLT1H LTR MaLR -16 533 6 484 228 37 0 chr3 79566143 79566279 -138470879 - MLT1L LTR MaLR 0 615 475 492 239 74 58 chr3 79566318 79566561 -138470597 - MLT1L LTR MaLR -223 392 146 430 279 92 30 chr3 79566574 79567170 -138469988 - L1M4 LINE L1 -2828 3318 2686 207 0 0 0 chr3 79567299 79567322 -138469836 + (TG)n Simple_repeat Simple_repeat 2 24 0 550 325 73 26 chr3 79567336 79567678 -138469480 - L1M4 LINE L1 -3679 2467 2110 290 297 27 0 chr3 79567768 79567879 -138469279 + MLT1E1-int LTR MaLR 1258 1371 0 2228 185 76 86 chr3 79567879 79568540 -138468618 + MLT1E1 LTR MaLR 1 654 0 569 311 47 5 chr3 79569620 79569810 -138467348 - MIR SINE MIR -34 228 31 2226 100 0 29 chr3 79569900 79570209 -138466949 + AluSx SINE Alu 1 300 -12 1308 145 5 5 chr3 79570242 79570442 -138466716 + AluJb SINE Alu 85 284 -28 348 64 0 0 chr3 79570442 79570489 -138466669 + (CATA)n Simple_repeat Simple_repeat 2 48 0 485 285 15 0 chr3 79571015 79571145 -138466013 - MER94 DNA DNA -2 132 1 219 290 0 0 chr3 79571179 79571248 -138465910 - MIR SINE MIR -55 207 139 396 311 82 0 chr3 79571262 79571397 -138465761 - L2 LINE L2 -1 3312 3167 1547 138 0 0 chr3 79574323 79574541 -138462617 - AluSg/x SINE Alu -17 293 76 1414 222 33 28 chr3 79574566 79574927 -138462231 + MLT1A1 LTR MaLR 3 365 0 258 195 39 26 chr3 79574939 79575016 -138462142 + MER112 DNA MER1_type 2 79 -181 250 225 62 0 chr3 79575032 79575112 -138462046 - MLT1I LTR MaLR -16 393 309 369 243 149 0 chr3 79575550 79575698 -138461460 + MER112 DNA MER1_type 90 259 -1 1054 147 98 9 chr3 79575821 79576045 -138461113 - MSTA LTR MaLR 0 428 185 914 98 0 166 chr3 79576063 79576268 -138460890 - L1PA8A LINE L1 -4 6127 5957 1224 108 26 5 chr3 79576268 79576463 -138460695 - MSTA LTR MaLR -229 199 1 299 251 181 36 chr3 79576469 79576638 -138460520 + MIR SINE MIR 9 190 -58 819 254 98 10 chr3 79576639 79576844 -138460314 - MIR SINE MIR -34 228 6 399 302 41 6 chr3 79577901 79578073 -138459085 - L1ME1 LINE L1 -9 6157 5980 1621 145 7 4 chr3 79578082 79578351 -138458807 + THE1B LTR MaLR 95 364 0 347 158 0 49 chr3 79578367 79578449 -138458709 - L1ME1 LINE L1 -198 5968 5891 3571 194 37 14 chr3 79578456 79579288 -138457870 - L1MB8 LINE L1 -2 6176 5326 2017 119 6 10 chr3 79579390 79579702 -138457456 + THE1B LTR MaLR 54 364 0 529 333 91 4 chr3 79579715 79579979 -138457179 - MLT1I LTR MaLR -117 292 6 361 370 23 51 chr3 79580205 79580462 -138456696 - L2 LINE L2 -558 2756 2507 24 0 0 0 chr3 79580932 79580956 -138456202 + AT_rich Low_complexity Low_complexity 1 24 0 578 325 57 0 chr3 79581393 79581602 -138455556 + LTR33A LTR ERVL 55 275 -248 426 320 60 0 chr3 79581708 79581908 -138455250 + LTR33A LTR ERVL 254 465 -58 22 0 0 0 chr3 79582316 79582338 -138454820 + AT_rich Low_complexity Low_complexity 1 22 0 665 264 32 41 chr3 79582548 79582768 -138454390 + MIR SINE MIR 1 218 -44 322 293 31 52 chr3 79582833 79583024 -138454134 - MER5A DNA MER1_type -1 188 2 296 372 78 9 chr3 79583144 79583362 -138453796 + MIR SINE MIR 30 262 0 1413 231 59 77 chr3 79584136 79584759 -138452399 + LTR9 LTR ERV1 1 612 0 234 0 0 0 chr3 79584926 79584952 -138452206 + (TTTTC)n Simple_repeat Simple_repeat 4 29 0 10799 31 0 0 chr3 79584952 79586998 -138450160 - L1PA3 LINE L1 -7 6148 4104 529 258 91 36 chr3 79587335 79587587 -138449571 + MLT1I LTR MaLR 1 266 -143 2031 97 8 0 chr3 79588145 79588442 -138448716 - AluSx SINE Alu 0 322 24 2623 157 119 5 chr3 79588452 79589091 -138448067 + L1MC2 LINE L1 5169 5876 -468 1820 147 16 10 chr3 79589091 79589397 -138447761 + MLT2D LTR ERVL 1 308 -106 1288 174 41 11 chr3 79589398 79589668 -138447490 + L1MC2 LINE L1 5905 6182 -162 218 333 49 0 chr3 79589671 79589773 -138447385 + MIR SINE MIR 124 230 -32 264 322 77 9 chr3 79590618 79590727 -138446431 - MIR SINE MIR -83 125 14 1161 249 148 38 chr3 79591477 79592004 -138445154 + MLT1G1 LTR MaLR 1 585 -10 397 232 35 70 chr3 79593509 79593651 -138443507 + MER97a DNA MER1_type? 16 152 -742 903 160 27 0 chr3 79593786 79593936 -138443222 - AluJb SINE Alu -7 305 152 301 207 0 0 chr3 79594612 79594670 -138442488 + MER5A DNA MER1_type 3 60 -129 254 250 24 0 chr3 79594670 79594754 -138442404 + MLT1I LTR MaLR 324 409 0 327 304 84 10 chr3 79594754 79594797 -138442361 + L1M4 LINE L1 2953 2991 -3155 6723 35 0 0 chr3 79594797 79595595 -138441563 + L1PA3 LINE L1 5358 6155 0 327 304 84 10 chr3 79595595 79595847 -138441311 + L1M4 LINE L1 2991 3270 -2876 1979 149 21 24 chr3 79596208 79596584 -138440574 + THE1C LTR MaLR 1 375 0 209 250 0 92 chr3 79596961 79597037 -138440121 + MIR SINE MIR 103 171 -91 1253 167 87 37 chr3 79597053 79597376 -138439782 + MER44D DNA MER2_type 1 609 0 700 295 77 42 chr3 79598793 79599367 -138437791 - L2 LINE L2 0 3313 2727 936 191 93 4 chr3 79599373 79599609 -138437549 + MSTA LTR MaLR 2 258 -170 2232 51 0 0 chr3 79599609 79599905 -138437253 - L1P LINE L1 -3063 3083 2788 1597 33 0 0 chr3 79599905 79600119 -138437039 + L1PA3 LINE L1 3206 3419 -2727 12810 34 0 0 chr3 79600228 79602549 -138434609 + L1PA3 LINE L1 3829 6152 -3 2898 196 91 47 chr3 79602563 79603266 -138433892 + Charlie1 DNA MER1_type 1600 2369 -392 724 167 18 0 chr3 79603266 79603416 -138433742 + FLAM_C SINE Alu 1 152 0 2898 196 91 47 chr3 79603416 79603771 -138433387 + Charlie1 DNA MER1_type 2369 2707 -54 532 245 34 7 chr3 79605471 79605618 -138431540 + MIR SINE MIR 74 224 -38 2248 124 0 0 chr3 79606440 79606746 -138430412 - AluSx SINE Alu -6 306 1 519 317 136 41 chr3 79609776 79610268 -138426890 + L2 LINE L2 2392 2930 -384 2308 102 0 0 chr3 79610765 79611060 -138426098 + AluSq SINE Alu 1 295 -18 257 0 30 0 chr3 79612291 79612324 -138424834 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 280 301 0 0 chr3 79612647 79612720 -138424438 + (CA)n Simple_repeat Simple_repeat 1 73 0 1143 210 29 12 chr3 79612720 79612963 -138424195 - MLT1A1 LTR MaLR 0 365 119 1051 279 81 10 chr3 79613025 79613409 -138423749 - LTR16A1 LTR ERVL -23 434 24 6194 249 31 21 chr3 79613743 79615390 -138421768 - L1PBb LINE L1 -2333 3870 2109 2206 124 0 0 chr3 79615390 79615689 -138421469 - AluSc SINE Alu -10 299 1 6194 249 31 21 chr3 79615689 79617036 -138420122 - L1PBb LINE L1 -4094 2109 777 620 138 26 0 chr3 79619166 79619282 -138417876 + L1MA8 LINE L1 6166 6284 -7 1368 252 96 17 chr3 79619503 79620148 -138417010 - L1ME1 LINE L1 -58 6108 5366 225 65 0 0 chr3 79620180 79620211 -138416947 + (TAAAA)n Simple_repeat Simple_repeat 1 31 0 203 347 74 41 chr3 79620746 79620867 -138416291 + L2 LINE L2 3148 3272 0 1213 149 0 0 chr3 79621752 79621926 -138415232 - AluJb SINE Alu -8 304 131 384 310 9 0 chr3 79622360 79622476 -138414682 + MIR SINE MIR 141 257 -5 1669 121 0 8 chr3 79622766 79623015 -138414143 + AluSc SINE Alu 63 309 0 378 269 58 19 chr3 79623118 79623274 -138413884 - LTR16A LTR ERVL -12 438 277 1328 278 101 9 chr3 79623684 79624141 -138413017 - LTR33 LTR ERVL -10 511 13 183 364 76 29 chr3 79624252 79624568 -138412590 + L2 LINE L2 2641 2971 -343 313 203 0 47 chr3 79624784 79624848 -138412310 + L2 LINE L2 3209 3269 -3 394 285 96 33 chr3 79624853 79625123 -138412035 - MER102b DNA MER1_type -44 297 11 527 165 39 19 chr3 79626565 79626668 -138410490 - FLAM_A SINE Alu -8 134 30 21 0 0 0 chr3 79626847 79626868 -138410290 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr3 79626901 79626929 -138410229 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr3 79627106 79627129 -138410029 + AT_rich Low_complexity Low_complexity 1 23 0 1738 149 197 3 chr3 79627668 79628018 -138409140 + MER47B DNA MER2_type 1 418 0 1899 191 3 0 chr3 79628030 79628375 -138408783 - MER7A DNA MER2_type 0 346 3 259 307 36 44 chr3 79629524 79629661 -138407497 + LTR33A LTR ERVL 73 208 -315 24 0 0 0 chr3 79629768 79629792 -138407366 + AT_rich Low_complexity Low_complexity 1 24 0 1483 201 77 46 chr3 79630369 79630758 -138406400 + L1MDa LINE L1 16 416 -6124 529 237 104 6 chr3 79630800 79630973 -138406185 + L1MDa LINE L1 867 1056 -5484 904 125 0 0 chr3 79630973 79631128 -138406030 - AluSc SINE Alu 0 323 169 1188 179 141 8 chr3 79631128 79631497 -138405661 + L1MDa LINE L1 1044 1461 -5079 183 42 0 0 chr3 79631497 79631521 -138405637 + (TC)n Simple_repeat Simple_repeat 2 25 0 22 103 0 0 chr3 79631531 79631609 -138405549 + AT_rich Low_complexity Low_complexity 1 78 0 208 75 25 25 chr3 79631628 79631668 -138405490 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 4202 187 66 21 chr3 79631745 79632895 -138404263 + L1MDa LINE L1 1512 2707 -3833 4243 193 41 8 chr3 79632896 79634078 -138403080 + L1MB7 LINE L1 4969 6182 -2 1665 247 59 5 chr3 79634086 79634627 -138402531 + L1MDa LINE L1 2698 3275 -3265 377 270 88 0 chr3 79634639 79634798 -138402360 + L1MDa LINE L1 3419 3591 -2949 391 247 144 0 chr3 79685215 79685312 -138351846 + L2 LINE L2 3191 3301 -12 1627 179 16 9 chr3 79685623 79685941 -138351217 + MER33 DNA MER1_type 2 321 -3 2503 128 34 0 chr3 79686084 79686436 -138350722 + THE1B LTR MaLR 1 364 0 238 351 86 13 chr3 79686446 79686597 -138350561 - MIR SINE MIR -81 181 20 1867 151 3 14 chr3 79687107 79687398 -138349760 - AluJo SINE Alu -14 298 11 777 230 35 83 chr3 79688220 79688450 -138348708 + L1MD3 LINE L1 6139 7995 0 244 286 50 79 chr3 79689327 79689467 -138347691 + L2 LINE L2 3137 3272 0 1774 188 0 0 chr3 79690508 79690806 -138346352 + AluJo SINE Alu 1 298 -14 3308 221 26 17 chr3 79691153 79691841 -138345317 - MER21B LTR ERV1 -169 694 1 571 286 81 40 chr3 79691854 79692127 -138345031 + MLT1I LTR MaLR 106 389 -20 181 333 0 0 chr3 79692569 79692626 -138344532 - MIR3 SINE MIR -8 200 144 367 242 17 67 chr3 79693189 79693309 -138343849 - MIR3 SINE MIR -53 155 42 527 291 73 43 chr3 79693956 79694035 -138343123 + L1ME LINE L1 5397 5472 -649 333 62 0 0 chr3 79694035 79694083 -138343075 + (CA)n Simple_repeat Simple_repeat 2 49 0 527 291 73 43 chr3 79694083 79694383 -138342775 + L1ME LINE L1 5472 5788 -333 296 215 21 65 chr3 79694627 79694720 -138342438 + MLT1I LTR MaLR 308 396 -13 43 35 0 0 chr3 79694969 79695026 -138342132 + AT_rich Low_complexity Low_complexity 1 57 0 539 252 49 7 chr3 79696145 79696288 -138340870 + MIR SINE MIR 114 262 0 2138 117 3 0 chr3 79696571 79696861 -138340297 + AluSc SINE Alu 1 291 -18 390 202 39 48 chr3 79696910 79697014 -138340144 - MIR SINE MIR -113 149 47 22 0 0 0 chr3 79697466 79697488 -138339670 + AT_rich Low_complexity Low_complexity 1 22 0 481 332 52 8 chr3 79697622 79697872 -138339286 - MIR SINE MIR 0 262 2 603 339 139 25 chr3 79698520 79698733 -138338425 - L2 LINE L2 -1 3312 3125 2142 131 0 3 chr3 79698733 79699046 -138338112 + AluSx SINE Alu 1 312 0 603 339 139 25 chr3 79699046 79699419 -138337739 - L2 LINE L2 -188 3125 2667 998 161 12 0 chr3 79699454 79699616 -138337542 - MER58B DNA MER1_type -4 337 174 208 303 42 17 chr3 79699660 79699779 -138337379 - L2 LINE L2 -733 2581 2460 2696 154 26 2 chr3 79699905 79700320 -138336838 + MSTC LTR MaLR 4 428 0 25 51 0 0 chr3 79701113 79701152 -138336006 + AT_rich Low_complexity Low_complexity 1 39 0 219 167 0 0 chr3 79701506 79701548 -138335610 + (TA)n Simple_repeat Simple_repeat 2 43 0 2335 103 0 3 chr3 79701650 79701962 -138335196 + AluY SINE Alu 1 311 0 2094 52 105 0 chr3 79704457 79704724 -138332434 - AluY SINE Alu -16 295 1 2567 59 0 0 chr3 79705066 79705369 -138331789 + AluY SINE Alu 2 304 -7 275 240 72 48 chr3 79705534 79705659 -138331499 - MER103 DNA DNA -2 164 37 686 251 196 34 chr3 79705938 79706548 -138330610 + LTR50 LTR ERVL 2 793 -2 376 231 58 19 chr3 79706655 79706759 -138330399 + L2 LINE L2 3201 3308 -5 2466 104 77 0 chr3 79706960 79707298 -138329860 + THE1B LTR MaLR 1 364 0 1587 215 157 82 chr3 79707595 79708340 -138328818 - MER21B LTR ERV1 -62 801 1 290 270 102 36 chr3 79709102 79709239 -138327919 - MER117 DNA MER1_type -44 153 8 450 211 242 0 chr3 79709301 79709429 -138327729 + MER58B DNA MER1_type 179 337 -4 340 232 9 107 chr3 79709711 79709778 -138327380 + MER58B DNA MER1_type 240 293 -2127 2151 130 3 0 chr3 79709778 79710079 -138327079 + AluSx SINE Alu 1 302 -10 340 232 9 107 chr3 79710079 79710123 -138327035 + MER58B DNA MER1_type 293 340 -1 278 287 154 15 chr3 79710164 79710300 -138326858 + L2 LINE L2 3112 3266 -6 1904 166 0 0 chr3 79710625 79710915 -138326243 - AluSx SINE Alu -22 290 1 188 308 0 19 chr3 79710927 79710979 -138326179 - L2 LINE L2 -20 3252 3202 185 254 91 18 chr3 79710995 79711050 -138326108 + MIR SINE MIR 14 72 -190 308 250 250 0 chr3 79711131 79711259 -138325899 - MIR SINE MIR -95 167 8 424 292 39 8 chr3 79712188 79712318 -138324840 - L1ME LINE L1 -5856 214 81 22 35 0 0 chr3 79712318 79712347 -138324811 + AT_rich Low_complexity Low_complexity 1 29 0 208 365 64 6 chr3 79712417 79712573 -138324585 - L3 LINE CR1 -465 1112 948 566 100 0 0 chr3 79712733 79712803 -138324355 + AluJ/FLAM SINE Alu 1 70 -242 36 0 0 0 chr3 79712822 79712858 -138324300 + AT_rich Low_complexity Low_complexity 1 36 0 430 245 277 13 chr3 79713337 79713496 -138323662 + MIR SINE MIR 59 259 -3 1386 234 43 87 chr3 79713895 79714411 -138322747 - L1ME LINE L1 -5550 520 28 2542 60 0 0 chr3 79714786 79715084 -138322074 - AluY SINE Alu -13 298 1 1096 91 0 14 chr3 79715085 79715228 -138321930 - AluY SINE Alu -170 141 1 509 269 75 92 chr3 79716519 79716746 -138320412 + MIR SINE MIR 20 242 -20 351 277 74 20 chr3 79717258 79717406 -138319752 + MLT1L LTR MaLR 150 305 -310 288 333 26 0 chr3 79717434 79717548 -138319610 - MLT1J1 LTR MaLR -327 119 3 244 208 19 0 chr3 79717792 79717845 -138319313 - MIR SINE MIR -140 122 69 636 286 69 0 chr3 79718030 79718261 -138318897 + LTR16C LTR ERVL 219 465 -26 630 277 38 0 chr3 79718521 79718705 -138318453 + MER113 DNA MER1_type? 331 521 0 188 352 37 0 chr3 79718734 79718788 -138318370 + L2 LINE L2 3201 3256 -16 420 349 75 10 chr3 79719511 79719803 -138317355 - MARNA DNA Mariner -112 474 164 260 64 21 21 chr3 79719885 79719932 -138317226 - HSMAR1 DNA Mariner -1239 48 2 513 110 98 0 chr3 79719994 79720076 -138317082 + Charlie1 DNA MER1_type 52 141 -2620 285 114 23 0 chr3 79720099 79720143 -138317015 - MLT1C LTR MaLR 0 467 423 2193 137 42 95 chr3 79720143 79720625 -138316533 - MLT1C LTR MaLR -7 460 5 323 295 0 105 chr3 79720688 79720755 -138316403 + MIR SINE MIR 84 156 -106 1601 189 0 31 chr3 79720755 79721073 -138316085 + AluJo SINE Alu 1 308 -4 323 295 0 105 chr3 79721073 79721205 -138315953 + MIR SINE MIR 156 262 0 306 0 0 0 chr3 79721351 79721385 -138315773 + (TG)n Simple_repeat Simple_repeat 1 34 0 2669 154 94 17 chr3 79721394 79721915 -138315243 + MER6 DNA MER2_type 240 800 -65 1685 106 0 0 chr3 79722184 79722401 -138314757 - AluSx SINE Alu -87 225 9 2585 166 4 42 chr3 79722609 79723115 -138314043 + L1MB3 LINE L1 5689 6175 -8 31 0 0 0 chr3 79723115 79723146 -138314012 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr3 79723635 79723665 -138313493 + AT_rich Low_complexity Low_complexity 1 30 0 465 76 0 0 chr3 79724495 79724561 -138312597 + (GGGGA)n Simple_repeat Simple_repeat 1 66 0 2099 131 7 0 chr3 79724747 79725053 -138312105 + AluSx SINE Alu 1 308 -4 313 262 12 24 chr3 79725104 79725188 -138311970 - MIR SINE MIR -146 116 34 327 328 73 26 chr3 79725232 79725464 -138311694 + L2 LINE L2 2608 2850 -464 23 0 0 0 chr3 79725695 79725718 -138311440 + AT_rich Low_complexity Low_complexity 1 23 0 336 271 35 88 chr3 79726227 79726397 -138310761 + MIR SINE MIR 94 254 -8 384 325 77 34 chr3 79726502 79726711 -138310447 - MIR SINE MIR -44 218 1 188 316 26 40 chr3 79726964 79727040 -138310118 + MIR SINE MIR 78 152 -56 293 343 61 36 chr3 79727358 79727638 -138309520 - L2 LINE L2 -95 3218 2932 1973 153 7 0 chr3 79728907 79729207 -138307951 + AluSx SINE Alu 1 302 -10 491 248 225 13 chr3 79729686 79729922 -138307236 + L2 LINE L2 2782 3058 -255 705 234 73 36 chr3 79729965 79730213 -138306945 + L1ME3A LINE L1 5910 6166 -4 427 308 33 62 chr3 79730228 79730501 -138306657 + L2 LINE L2 3029 3293 -20 452 286 0 24 chr3 79731187 79731313 -138305845 + MIR3 SINE MIR 69 191 -17 221 215 0 13 chr3 79733063 79733142 -138304016 + GA-rich Low_complexity Low_complexity 3 80 0 194 269 39 0 chr3 79733445 79733497 -138303661 - L2 LINE L2 -255 3058 3005 5047 116 56 65 chr3 79733630 79734463 -138302695 + LTR12 LTR ERV1 1 826 0 735 100 133 25 chr3 79734463 79734583 -138302575 + LTR12 LTR ERV1 582 714 0 1859 121 23 28 chr3 79734644 79734991 -138302167 - MER4A LTR ERV1 0 664 261 620 122 10 10 chr3 79734991 79735089 -138302069 - MER4A LTR ERV1 -566 98 1 493 268 55 24 chr3 79735149 79735313 -138301845 - MIR SINE MIR -44 218 50 21 0 0 0 chr3 79735477 79735498 -138301660 + AT_rich Low_complexity Low_complexity 1 21 0 540 186 56 134 chr3 79735519 79735680 -138301478 - L1MC4 LINE L1 -800 7242 7103 2885 127 26 2 chr3 79735680 79736104 -138301054 - MER57B LTR ERV1 0 434 1 540 186 56 134 chr3 79736104 79736173 -138300985 - L1MC4 LINE L1 -939 7103 7030 360 170 14 184 chr3 79736214 79736361 -138300797 - MIR SINE MIR -62 200 79 377 263 53 41 chr3 79736551 79736722 -138300436 - MER89 LTR ERV1 -13 546 374 194 366 0 0 chr3 79737040 79737111 -138300047 + L2 LINE L2 3239 3309 -4 226 247 146 34 chr3 79737325 79737414 -138299744 + MIR SINE MIR 154 252 -10 297 297 102 17 chr3 79737654 79737772 -138299386 + MER5A DNA MER1_type 59 186 -3 367 301 68 0 chr3 79738147 79738250 -138298908 + MIR SINE MIR 55 164 -98 213 256 0 0 chr3 79738356 79738399 -138298759 + MIR SINE MIR 105 147 -61 1631 191 86 9 chr3 79739177 79739492 -138297666 - MER2 DNA MER2_type -4 340 2 1843 165 9 19 chr3 79740053 79740368 -138296790 - AluJo SINE Alu 0 312 1 323 209 0 15 chr3 79740410 79740477 -138296681 - MER5A DNA MER1_type -64 125 60 1757 97 0 0 chr3 79740549 79740776 -138296382 + AluSq SINE Alu 1 227 -86 450 340 148 10 chr3 79740964 79741255 -138295903 + L2 LINE L2 2942 3272 0 184 167 250 0 chr3 79741477 79741537 -138295621 - MIR SINE MIR -14 248 174 1042 174 50 30 chr3 79741645 79741846 -138295312 + MER3 DNA MER1_type 1 205 -4 691 314 78 51 chr3 79741901 79742060 -138295098 - LTR16C LTR ERVL -10 481 328 201 39 0 0 chr3 79742060 79742086 -138295072 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 691 314 78 51 chr3 79742086 79742321 -138294837 - LTR16C LTR ERVL -163 328 76 359 281 104 55 chr3 79743399 79743745 -138293413 + L1ME LINE L1 5276 5631 -490 220 200 43 0 chr3 79743748 79743818 -138293340 + (TA)n Simple_repeat Simple_repeat 2 74 0 855 223 49 5 chr3 79743818 79744002 -138293156 + MER58A DNA MER1_type 33 224 0 626 191 0 0 chr3 79744025 79744130 -138293028 + L2 LINE L2 3196 3300 -13 283 125 34 114 chr3 79744421 79744472 -138292686 + L1ME4a LINE L1 6013 6056 -65 2327 113 0 0 chr3 79744472 79744782 -138292376 - AluSg SINE Alu 0 310 1 283 125 34 114 chr3 79744782 79744818 -138292340 + L1ME4a LINE L1 6056 6093 -28 22 56 0 0 chr3 79744830 79744866 -138292292 + AT_rich Low_complexity Low_complexity 1 36 0 3121 112 23 30 chr3 79745549 79746022 -138291136 + L1PA16 LINE L1 5697 6166 0 1965 145 0 0 chr3 79746248 79746552 -138290606 - AluSx SINE Alu 0 304 1 440 276 70 50 chr3 79746636 79746835 -138290323 - MIR SINE MIR -30 232 30 914 114 15 190 chr3 79746908 79747124 -138290034 - MER20 DNA MER1_type -1 218 54 2308 118 77 3 chr3 79747124 79747463 -138289695 + THE1B LTR MaLR 1 364 0 914 114 15 190 chr3 79747463 79747509 -138289649 - MER20 DNA MER1_type -165 54 2 21 0 0 0 chr3 79747685 79747706 -138289452 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 79748189 79748210 -138288948 + AT_rich Low_complexity Low_complexity 1 21 0 282 313 129 21 chr3 79748314 79748547 -138288611 - MLT1K LTR MaLR -148 440 183 584 301 53 48 chr3 79748568 79748963 -138288195 - LTR16A1 LTR ERVL -41 416 20 1618 200 78 25 chr3 79749262 79749657 -138287501 - L1ME1 LINE L1 -5 6161 5746 269 304 37 56 chr3 79749659 79749820 -138287338 - MIR SINE MIR -47 215 58 1390 276 46 5 chr3 79750694 79751067 -138286091 + LTR16C LTR ERVL 96 483 -8 384 307 87 0 chr3 79751100 79751250 -138285908 - MIR SINE MIR -40 222 60 2313 104 7 0 chr3 79751288 79751597 -138285561 - AluSx SINE Alu -1 311 1 24 0 0 0 chr3 79752024 79752048 -138285110 + AT_rich Low_complexity Low_complexity 1 24 0 2260 137 82 51 chr3 79752587 79753002 -138284156 + MSTA LTR MaLR 1 428 0 357 268 171 6 chr3 79753021 79753185 -138283973 - MIR SINE MIR -1 261 71 26 0 0 0 chr3 79753619 79753645 -138283513 + AT_rich Low_complexity Low_complexity 1 26 0 2006 144 3 14 chr3 79753653 79753945 -138283213 - AluSx SINE Alu -23 289 1 187 304 127 25 chr3 79754133 79754291 -138282867 - MIR SINE MIR -32 230 57 28 48 0 0 chr3 79754299 79754341 -138282817 + AT_rich Low_complexity Low_complexity 1 42 0 844 152 32 0 chr3 79754346 79754471 -138282687 - FLAM_C SINE Alu -14 129 1 441 227 0 0 chr3 79754613 79754701 -138282457 + MER103 DNA DNA 9 96 -70 1628 209 258 8 chr3 79754727 79755230 -138281928 + MLT1E1 LTR MaLR 24 652 -2 1508 226 49 44 chr3 79755584 79755995 -138281163 + MLT2D LTR ERVL 2 414 0 271 333 104 11 chr3 79756294 79756477 -138280681 - L2 LINE L2 -803 2511 2312 1159 202 26 0 chr3 79756492 79756720 -138280438 + AluJo SINE Alu 79 312 0 276 100 0 0 chr3 79756768 79756808 -138280350 + (CATA)n Simple_repeat Simple_repeat 1 40 0 306 0 0 0 chr3 79756808 79756842 -138280316 + (TG)n Simple_repeat Simple_repeat 1 34 0 264 315 96 0 chr3 79756849 79756995 -138280163 - L2 LINE L2 -1085 2229 2070 241 288 0 14 chr3 79757513 79757591 -138279567 - Charlie8 DNA MER1_type -1000 1417 1349 233 315 0 0 chr3 79757674 79757747 -138279411 - Charlie8 DNA MER1_type -2343 74 2 216 0 0 0 chr3 79758226 79758250 -138278908 + (A)n Simple_repeat Simple_repeat 1 24 0 268 356 77 0 chr3 79758409 79758513 -138278645 + MER81 DNA DNA 3 114 0 233 353 78 0 chr3 79758558 79758711 -138278447 - L2 LINE L2 -571 2743 2579 890 197 135 5 chr3 79758873 79759066 -138278092 + MER20 DNA MER1_type 1 218 -1 356 233 140 20 chr3 79759264 79759414 -138277744 - MIR SINE MIR 0 262 95 360 23 0 0 chr3 79759416 79759459 -138277699 + MADE1 DNA Mariner 1 43 -37 292 284 176 0 chr3 79760503 79760605 -138276553 - L2 LINE L2 0 3272 3153 194 288 41 27 chr3 79760739 79760812 -138276346 + L2 LINE L2 3186 3259 -13 1708 179 7 16 chr3 79760894 79761201 -138275957 - AluJb SINE Alu -8 304 1 1102 211 80 28 chr3 79761357 79761646 -138275512 + MER33 DNA MER1_type 21 324 0 207 0 0 0 chr3 79761843 79761866 -138275292 + (T)n Simple_repeat Simple_repeat 1 23 0 295 303 136 13 chr3 79763181 79763336 -138273822 + MIR SINE MIR 74 247 -15 25 51 0 0 chr3 79763422 79763461 -138273697 + AT_rich Low_complexity Low_complexity 1 39 0 674 177 0 24 chr3 79763462 79763586 -138273572 - L1PB4 LINE L1 -1 6155 6035 2597 99 8 51 chr3 79764600 79764992 -138272166 + THE1C LTR MaLR 1 375 0 568 168 0 0 chr3 79765212 79765307 -138271851 + L1PB1 LINE L1 6054 6148 -3 234 154 0 0 chr3 79765307 79765346 -138271812 - MADE1 DNA Mariner -41 39 1 1941 265 56 21 chr3 79765513 79766167 -138270991 + L1ME3A LINE L1 5193 5873 -297 3815 233 50 17 chr3 79766186 79767389 -138269769 + L1MCb LINE L1 174 1440 -4851 1181 129 41 21 chr3 79767389 79767583 -138269575 - Tigger7 DNA MER2_type 0 2487 2290 236 226 0 0 chr3 79767572 79767625 -138269533 - Tigger7 DNA MER2_type -2342 145 93 * 1078 192 0 6 chr3 79767625 79767802 -138269356 + AluJb SINE Alu 3 178 -134 724 179 8 0 chr3 79767843 79767960 -138269198 + AluJb SINE Alu 176 293 -19 250 180 33 0 chr3 79767975 79768036 -138269122 + L1MCb LINE L1 2798 2860 -3704 623 161 0 0 chr3 79768153 79768240 -138268918 - AluS SINE Alu -223 89 3 3167 246 28 111 chr3 79768242 79769677 -138267481 - L1M2 LINE L1 -4338 2870 1127 1712 283 110 20 chr3 79770607 79771296 -138265862 - L1M2 LINE L1 -6437 772 22 305 301 18 26 chr3 79771422 79771535 -138265623 - L2 LINE L2 0 3313 3202 21 0 0 0 chr3 79772106 79772127 -138265031 + AT_rich Low_complexity Low_complexity 1 21 0 190 289 37 74 chr3 79772805 79772940 -138264218 - MER5A DNA MER1_type -31 158 29 634 153 39 197 chr3 79773845 79774099 -138263059 + MER20 DNA MER1_type 1 214 -5 283 286 77 0 chr3 79774247 79774338 -138262820 + MIR SINE MIR 57 154 -108 279 315 19 37 chr3 79774813 79774921 -138262237 - MLT2E LTR ERVL -484 144 39 187 323 97 0 chr3 79775023 79775085 -138262073 - MIR SINE MIR -88 174 107 267 375 48 6 chr3 79775470 79775638 -138261520 + MIR SINE MIR 50 224 -38 402 232 165 85 chr3 79775660 79775932 -138261226 - L2 LINE L2 -12 3301 3008 2627 257 176 17 chr3 79775943 79776567 -138260591 - L2 LINE L2 -4 3309 2786 1568 151 115 7 chr3 79776567 79776846 -138260312 - AluSx SINE Alu -3 309 1 2627 257 176 17 chr3 79776846 79777506 -138259652 - L2 LINE L2 -527 2786 1807 2229 92 0 19 chr3 79777642 79777957 -138259201 + AluSc SINE Alu 1 309 0 718 227 219 14 chr3 79777970 79778238 -138258920 + MLT1F1 LTR MaLR 168 492 -75 604 145 189 87 chr3 79778238 79778510 -138258648 - MER4C LTR ERV1 0 465 157 610 95 102 95 chr3 79778516 79778653 -138258505 - MER4A LTR ERV1 -318 346 209 1237 137 9 35 chr3 79778682 79778909 -138258249 - MER4A LTR ERV1 -442 222 2 293 233 14 0 chr3 79778912 79778985 -138258173 + MLT1F1 LTR MaLR 494 567 0 579 229 53 6 chr3 79780842 79781012 -138256146 - MER5B DNA MER1_type 0 178 1 783 256 84 5 chr3 79781015 79781230 -138255928 + MIR SINE MIR 12 243 -19 369 0 0 0 chr3 79781402 79781443 -138255715 + (TG)n Simple_repeat Simple_repeat 2 42 0 1337 123 123 64 chr3 79781908 79782265 -138254893 - L1MD1 LINE L1 0 6242 5865 * 2986 245 14 30 chr3 79782263 79783332 -138253826 - L1M4 LINE L1 -2481 3665 2614 225 0 0 0 chr3 79783809 79783834 -138253324 + (T)n Simple_repeat Simple_repeat 1 25 0 201 74 0 0 chr3 79783919 79783946 -138253212 + (A)n Simple_repeat Simple_repeat 1 27 0 2387 87 0 3 chr3 79784549 79784860 -138252298 - AluY SINE Alu -1 310 1 32 26 0 0 chr3 79784919 79784958 -138252200 + AT_rich Low_complexity Low_complexity 1 39 0 4096 186 59 31 chr3 79785715 79786431 -138250727 - L1MC3 LINE L1 -6 7779 7022 681 237 0 0 chr3 79786431 79786549 -138250609 - FLAM_A SINE Alu -15 118 1 4096 186 59 31 chr3 79786549 79786875 -138250283 - L1MC3 LINE L1 -763 7022 6707 220 254 48 0 chr3 79786964 79787027 -138250131 + MIR SINE MIR 129 194 -68 1955 123 0 7 chr3 79788454 79788723 -138248435 - AluSx SINE Alu -12 300 34 342 58 0 19 chr3 79789444 79789496 -138247662 - MADE1 DNA Mariner 0 80 30 382 165 0 13 chr3 79789497 79789576 -138247582 - L1P LINE L1 -1097 5049 4972 1119 157 29 2 chr3 79789578 79789886 -138247272 + L1P LINE L1 5067 5379 -772 1975 145 6 26 chr3 79789986 79790330 -138246828 + MSTC LTR MaLR 92 428 0 773 236 34 0 chr3 79790444 79790622 -138246536 - MER5A DNA MER1_type 0 189 6 332 294 8 40 chr3 79790648 79790774 -138246384 + L2 LINE L2 3192 3313 0 464 258 8 17 chr3 79790931 79791051 -138246107 - MER58B DNA MER1_type -36 305 187 268 268 52 0 chr3 79791167 79791264 -138245894 - L1ME3A LINE L1 -9 6161 6060 1604 213 83 35 chr3 79791381 79791861 -138245297 - MLT1D LTR MaLR 0 505 3 188 354 0 15 chr3 79792112 79792177 -138244981 - L3 LINE CR1 -960 617 554 183 304 72 113 chr3 79792536 79792730 -138244428 + L3 LINE CR1 1103 1288 -289 301 315 91 28 chr3 79792757 79792900 -138244258 - MER5A DNA MER1_type -1 188 37 992 275 68 45 chr3 79792930 79793197 -138243961 - L2 LINE L2 -8 3305 3046 1661 192 21 0 chr3 79793197 79793484 -138243674 - AluJo SINE Alu -19 293 1 1837 204 3 0 chr3 79793486 79793785 -138243373 - AluJo SINE Alu -12 300 1 992 275 68 45 chr3 79793785 79793957 -138243201 - L2 LINE L2 -267 3046 2853 206 227 0 0 chr3 79794169 79794213 -138242945 + MER5B DNA MER1_type 1 44 -134 240 402 9 9 chr3 79794666 79794773 -138242385 + MER5A DNA MER1_type 61 167 -22 196 340 43 57 chr3 79794667 79794808 -138242350 - MER5A DNA MER1_type -50 139 1 * 859 177 58 13 chr3 79795270 79795578 -138241580 - MSTD LTR MaLR 0 396 1 339 304 0 0 chr3 79795578 79795680 -138241478 + L2 LINE L2 3212 3313 0 217 214 0 0 chr3 79795963 79796005 -138241153 + MIR3 SINE MIR 153 194 -14 317 350 20 0 chr3 79796303 79796403 -138240755 - L2 LINE L2 -50 3222 3121 270 322 0 64 chr3 79796434 79796670 -138240488 + L1MC5 LINE L1 7000 7220 -741 738 220 207 52 chr3 79796750 79797132 -138240026 - MLT1D LTR MaLR -64 441 1 445 224 131 0 chr3 79797279 79797386 -138239772 + FLAM_C SINE Alu 3 123 -10 21 0 0 0 chr3 79797386 79797407 -138239751 + AT_rich Low_complexity Low_complexity 1 21 0 749 260 61 51 chr3 79798408 79798720 -138238438 - MER102a DNA MER1_type -12 318 4 189 297 16 0 chr3 79798873 79798937 -138238221 - MIR3 SINE MIR -41 167 103 347 265 74 47 chr3 79799186 79799380 -138237778 - MIR SINE MIR -36 226 20 560 248 12 25 chr3 79799638 79799799 -138237359 - LTR33 LTR ERVL -7 514 356 565 122 9 9 chr3 79799900 79800007 -138237151 + (GGAA)n Simple_repeat Simple_repeat 3 109 0 554 235 94 13 chr3 79801195 79801429 -138235729 - L1MDa LINE L1 -3493 3715 3463 362 272 150 12 chr3 79801496 79801669 -138235489 - L1MDa LINE L1 -3663 3545 3349 261 264 23 0 chr3 79801670 79801757 -138235401 - L1MDa LINE L1 -4232 2976 2888 1292 167 24 16 chr3 79801758 79802009 -138235149 + Tigger3(Golem) DNA MER2_type 2 254 -2775 2259 158 38 7 chr3 79802010 79802203 -138234955 + Tigger3(Golem) DNA MER2_type 2597 2783 -245 1465 101 19 10 chr3 79802203 79802412 -138234746 - AluSp SINE Alu -12 301 91 2259 158 38 7 chr3 79802412 79802637 -138234521 + Tigger3(Golem) DNA MER2_type 2783 3028 0 4796 226 104 26 chr3 79802637 79804483 -138232675 - L1MDa LINE L1 -4319 2889 809 813 213 15 5 chr3 79804491 79804688 -138232470 - L1M4 LINE L1 -5297 1912 1714 622 246 55 5 chr3 79804788 79804987 -138232171 - MER3 DNA MER1_type 0 209 1 419 312 98 8 chr3 79804992 79805424 -138231734 - L1M4 LINE L1 -513 5651 5164 315 239 185 8 chr3 79805526 79805656 -138231502 - MLT1J2 LTR MaLR -231 219 67 257 336 76 0 chr3 79805959 79806236 -138230922 - L1M4 LINE L1 -1221 4925 4628 209 222 0 22 chr3 79806374 79806419 -138230739 + (CATA)n Simple_repeat Simple_repeat 1 44 0 328 215 25 0 chr3 79807533 79807626 -138229532 - L1MC4 LINE L1 0 8041 7909 225 250 23 11 chr3 79807627 79807715 -138229443 + (TTTA)n Simple_repeat Simple_repeat 2 90 0 197 156 0 22 chr3 79807715 79807760 -138229398 + (TA)n Simple_repeat Simple_repeat 1 44 0 1184 249 65 13 chr3 79807797 79808194 -138228964 - L1MC4 LINE L1 -130 7912 7495 708 309 36 5 chr3 79808198 79808421 -138228737 + L2 LINE L2 1772 2001 -1313 2092 140 13 53 chr3 79808539 79808918 -138228240 + THE1B LTR MaLR 1 364 0 11691 95 9 0 chr3 79808918 79810484 -138226674 + THE1B-int LTR MaLR 1 1580 0 2203 135 19 19 chr3 79810484 79810848 -138226310 + THE1B LTR MaLR 1 364 0 287 274 14 0 chr3 79811140 79811213 -138225945 + MER58B DNA MER1_type 187 260 -81 2130 115 36 0 chr3 79811213 79811544 -138225614 - Tigger3(Golem) DNA MER2_type -1 3028 2686 454 140 97 21 chr3 79811566 79811659 -138225499 - Tigger3(Golem) DNA MER2_type -2928 101 2 379 232 12 0 chr3 79811660 79811742 -138225416 + MER58B DNA MER1_type 259 341 0 3122 77 35 5 chr3 79812073 79812504 -138224654 + MLT2A1 LTR ERVL 1 444 0 17660 70 3 4 chr3 79812650 79815004 -138222154 + HERVL LTR ERVL 2191 4542 -1112 5162 236 74 20 chr3 79815104 79818559 -138218599 + L1MC3 LINE L1 3077 5402 -744 1854 123 0 0 chr3 79818559 79818812 -138218346 - AluSg SINE Alu -57 253 1 25477 92 3 18 chr3 79818826 79823594 -138213564 - L1PA7 LINE L1 0 6469 1771 4743 127 35 0 chr3 79823582 79824321 -138212837 - L1PA7 LINE L1 -5681 780 16 * 2215 129 0 0 chr3 79824321 79824616 -138212542 - AluSq SINE Alu -18 295 1 3119 204 46 24 chr3 79824627 79825459 -138211699 + L1MC3 LINE L1 6727 7576 -209 558 192 0 0 chr3 79825561 79825660 -138211498 - MER5A DNA MER1_type -90 99 1 219 69 0 0 chr3 79827009 79827038 -138210120 + (T)n Simple_repeat Simple_repeat 1 29 0 6602 11 0 2 chr3 79827039 79827827 -138209331 - L1PA2 LINE L1 0 6155 5370 4516 33 0 2 chr3 79827825 79828398 -138208760 + L1P LINE L1 1584 2155 -3991 * 2266 70 0 17 chr3 79829252 79829551 -138207607 - AluY SINE Alu -17 294 1 624 202 22 101 chr3 79829983 79830211 -138206947 - L1MC5 LINE L1 -62 7899 7690 491 226 151 0 chr3 79830208 79830354 -138206804 + L1MCa LINE L1 12 179 -6247 * 425 56 0 0 chr3 79830355 79830409 -138206749 - THE1B LTR MaLR -310 54 1 921 220 19 12 chr3 79830409 79830668 -138206490 + L1MCa LINE L1 2578 2838 -3588 2037 263 36 16 chr3 79830738 79831511 -138205647 + L1MCa LINE L1 3298 4086 -2340 253 311 93 25 chr3 79832037 79832198 -138204960 + MIR SINE MIR 91 262 0 276 284 0 45 chr3 79832373 79832461 -138204697 - MIR SINE MIR -68 194 111 * 334 322 76 13 chr3 79832447 79832650 -138204508 + MIR SINE MIR 32 252 -10 193 328 16 0 chr3 79832666 79832727 -138204431 - L2 LINE L2 -2119 1195 1134 189 333 0 0 chr3 79833016 79833079 -138204079 - L2 LINE L2 -221 3051 2989 639 312 135 20 chr3 79833797 79834351 -138202807 + MER115 DNA AcHobo 10 693 0 1967 172 60 14 chr3 79834377 79834876 -138202282 - L1 LINE L1 -1494 4652 4131 * 2016 190 9 16 chr3 79834874 79835306 -138201852 + L1MB1 LINE L1 5359 5787 -525 4213 99 23 86 chr3 79835306 79835873 -138201285 - LTR8 LTR ERV1 0 691 90 2317 100 0 6 chr3 79835873 79836184 -138200974 - AluSx SINE Alu -2 310 2 4213 99 23 86 chr3 79836184 79836287 -138200871 - LTR8 LTR ERV1 -601 90 68 2305 75 3 0 chr3 79836287 79836579 -138200579 - AluY SINE Alu -18 293 1 4213 99 23 86 chr3 79836579 79836641 -138200517 - LTR8 LTR ERV1 -623 68 4 1687 146 16 16 chr3 79836641 79836971 -138200187 + L1MB1 LINE L1 5861 6168 0 319 299 28 49 chr3 79837153 79837297 -138199861 + MIR3 SINE MIR 64 204 -4 1400 269 165 33 chr3 79838361 79838775 -138198383 - L2 LINE L2 -26 3287 2929 2291 72 0 44 chr3 79838775 79839095 -138198063 - AluY SINE Alu -1 310 5 1400 269 165 33 chr3 79839095 79839423 -138197735 - L2 LINE L2 -384 2929 2439 1152 177 0 18 chr3 79839717 79839943 -138197215 - L1MD1 LINE L1 -2 6240 6019 1360 198 40 52 chr3 79839946 79840568 -138196590 - LTR28 LTR ERV1 -1 1019 354 343 237 92 30 chr3 79840565 79840846 -138196312 - LTR1 LTR ERV1 -286 139 1 * 29076 114 13 61 chr3 79840913 79847359 -138189799 - L1PA7 LINE L1 -8 6146 12 320 313 62 57 chr3 79847406 79847617 -138189541 + L3 LINE CR1 1095 1306 -271 2348 101 0 0 chr3 79847798 79848096 -138189062 - AluSp SINE Alu -15 298 1 357 210 60 78 chr3 79848102 79848269 -138188889 + L1MC5 LINE L1 7706 7869 -92 350 218 21 31 chr3 79849269 79849470 -138187688 + CT-rich Low_complexity Low_complexity 1 198 0 481 290 115 10 chr3 79849510 79849710 -138187448 + MIR SINE MIR 42 262 0 234 337 35 23 chr3 79849808 79849894 -138187264 - MIR SINE MIR -168 94 8 402 313 193 5 chr3 79850554 79850746 -138186412 + MIR SINE MIR 5 232 -30 205 378 49 0 chr3 79850762 79850844 -138186314 - L2 LINE L2 0 3272 3187 1340 156 83 47 chr3 79851751 79852052 -138185106 - AluJo SINE Alu 0 312 1 486 324 126 20 chr3 79852513 79852760 -138184398 + L2 LINE L2 2992 3264 -8 286 247 95 95 chr3 79852763 79852921 -138184237 + MER91A DNA MER1_type 3 160 -36 201 121 0 0 chr3 79853622 79853655 -138183503 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 213 279 66 16 chr3 79853676 79853737 -138183421 + L2 LINE L2 3246 3309 -4 383 226 0 0 chr3 79853825 79853909 -138183249 - MLT1C LTR MaLR -201 266 183 192 340 0 0 chr3 79853924 79853974 -138183184 + L2 LINE L2 3220 3269 -44 748 242 0 6 chr3 79854039 79854217 -138182941 + MER5B DNA MER1_type 2 178 0 1023 193 110 11 chr3 79854266 79854634 -138182524 + MLT1C LTR MaLR 6 416 -51 731 139 0 0 chr3 79854634 79854742 -138182416 - AluJb SINE Alu -181 131 24 228 132 26 0 chr3 79854790 79854828 -138182330 + MLT1B LTR MaLR 352 390 0 597 281 113 69 chr3 79855837 79856299 -138180859 + L2 LINE L2 2830 3311 -2 522 240 100 57 chr3 79856392 79856532 -138180626 - MLT1H LTR MaLR -168 381 249 2062 90 4 0 chr3 79856532 79856800 -138180358 + AluSp SINE Alu 1 269 -44 522 240 100 57 chr3 79856800 79856966 -138180192 - MLT1H LTR MaLR -300 249 20 734 204 0 0 chr3 79859134 79859281 -138177877 - FRAM SINE Alu -10 166 20 267 258 145 16 chr3 79859360 79859546 -138177612 - L1ME4a LINE L1 -182 5939 5730 521 144 0 11 chr3 79859568 79859658 -138177500 + AluSg/x SINE Alu 214 302 -8 258 179 0 0 chr3 79859869 79859925 -138177233 - L1ME4a LINE L1 -682 5439 5384 231 301 21 0 chr3 79860047 79860140 -138177018 + L1MC/D LINE L1 5749 5843 -1965 25 0 0 0 chr3 79860256 79860281 -138176877 + AT_rich Low_complexity Low_complexity 1 25 0 316 276 88 37 chr3 79860419 79860636 -138176522 - L1MC4a LINE L1 -1878 5930 5703 189 171 0 0 chr3 79860644 79860679 -138176479 + (TA)n Simple_repeat Simple_repeat 2 36 0 2150 137 0 0 chr3 79860857 79861150 -138176008 - AluSx SINE Alu -19 293 1 3122 115 27 4 chr3 79861163 79861678 -138175480 + L1MA8 LINE L1 5548 6074 -217 943 114 32 0 chr3 79861681 79861839 -138175319 + L1MA8 LINE L1 6123 6285 -6 1029 175 0 0 chr3 79862898 79863064 -138174094 - FRAM SINE Alu -7 169 4 22 35 0 0 chr3 79864028 79864057 -138173101 + AT_rich Low_complexity Low_complexity 1 29 0 719 233 17 0 chr3 79864170 79864346 -138172812 - MER110 LTR ERV1 -17 474 296 1422 154 43 68 chr3 79864481 79864851 -138172307 - L1MD2 LINE L1 -456 5903 5543 357 278 75 15 chr3 79865473 79865606 -138171552 - MIR SINE MIR -4 258 118 24 53 0 0 chr3 79865803 79865841 -138171317 + AT_rich Low_complexity Low_complexity 1 38 0 293 306 132 50 chr3 79865842 79866065 -138171093 - MIR SINE MIR -8 254 16 180 135 0 0 chr3 79866097 79866134 -138171024 + (CA)n Simple_repeat Simple_repeat 2 38 0 2116 116 51 31 chr3 79866165 79866520 -138170638 + THE1B LTR MaLR 1 362 -2 449 35 0 0 chr3 79866522 79866579 -138170579 + THE1B-int LTR MaLR 1 57 -1523 * 3784 99 7 4 chr3 79866543 79867099 -138170059 - THE1-int LTR MaLR -956 624 67 230 361 0 0 chr3 79867767 79867828 -138169330 - L2 LINE L2 -220 3052 2992 304 255 39 10 chr3 79868347 79868449 -138168709 + MER117 DNA MER1_type 26 130 -67 325 320 34 41 chr3 79869554 79869587 -138167571 - MIR SINE MIR -70 192 160 1765 159 29 37 chr3 79869587 79869965 -138167193 + THE1C LTR MaLR 1 375 0 325 320 34 41 chr3 79869965 79870078 -138167080 - MIR SINE MIR -102 160 47 484 227 42 0 chr3 79870751 79870870 -138166288 + MIR SINE MIR 79 202 -60 681 256 123 40 chr3 79871269 79871691 -138165467 + LTR16A1 LTR ERVL 1 457 0 185 250 0 67 chr3 79872575 79872635 -138164523 + MIR SINE MIR 19 74 -134 446 0 19 0 chr3 79873522 79873576 -138163582 + (GA)n Simple_repeat Simple_repeat 2 56 0 1968 159 0 10 chr3 79873603 79873905 -138163253 - AluJb SINE Alu -13 299 1 285 152 25 38 chr3 79874079 79874158 -138163000 - L1MC5 LINE L1 -44 7917 7840 24 32 0 0 chr3 79874190 79874221 -138162937 + AT_rich Low_complexity Low_complexity 1 31 0 296 229 24 0 chr3 79874372 79874455 -138162703 - L1MC4 LINE L1 -39 8003 7919 2346 84 30 0 chr3 79874596 79874895 -138162263 - AluSq SINE Alu -1 312 5 782 157 0 20 chr3 79874911 79875058 -138162100 - L1PA8 LINE L1 -9 6163 6020 7198 113 22 25 chr3 79875058 79876479 -138160679 - L1PA8A LINE L1 -570 5561 4151 3323 243 77 45 chr3 79876494 79877945 -138159213 - L1MC4 LINE L1 -197 7845 6350 326 221 0 30 chr3 79877995 79878126 -138159032 + CT-rich Low_complexity Low_complexity 2 128 0 369 284 30 52 chr3 79878149 79878381 -138158777 - L1MC4a LINE L1 -1524 6284 6058 13488 194 25 34 chr3 79878784 79878967 -138158191 - L1PB4 LINE L1 -1 6857 6674 212 0 36 0 chr3 79878967 79878995 -138158163 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 279 0 0 0 chr3 79878994 79879025 -138158133 + (TA)n Simple_repeat Simple_repeat 2 32 0 13488 194 25 34 chr3 79878995 79879027 -138158131 - L1PB4 LINE L1 -184 6674 6643 1847 157 3 0 chr3 79879027 79879314 -138157844 - AluSx SINE Alu -24 288 1 13488 194 25 34 chr3 79879314 79881592 -138155566 - L1PB4 LINE L1 -215 6643 4346 186 43 0 0 chr3 79881592 79881615 -138155543 + (TG)n Simple_repeat Simple_repeat 2 24 0 13488 194 25 34 chr3 79881615 79883365 -138153793 - L1PB4 LINE L1 -2512 4346 2582 2185 115 14 0 chr3 79883365 79883491 -138153667 + AluSq SINE Alu 1 124 -189 315 0 0 0 chr3 79883491 79883526 -138153632 + (CA)n Simple_repeat Simple_repeat 2 36 0 2185 115 14 0 chr3 79883526 79883695 -138153463 + AluSq SINE Alu 124 300 -13 13488 194 25 34 chr3 79883695 79883964 -138153194 - L1PB4 LINE L1 -4276 2582 2422 1908 156 3 22 chr3 79883964 79884278 -138152880 - AluSx SINE Alu -2 310 3 13488 194 25 34 chr3 79884278 79884548 -138152610 - L1PB4 LINE L1 -4436 2422 2151 299 235 68 53 chr3 79884686 79884818 -138152340 - L1MDa LINE L1 -3697 2843 2710 3491 191 81 15 chr3 79884824 79885385 -138151773 - L1MB7 LINE L1 -20 6164 5641 2113 92 3 40 chr3 79885385 79885689 -138151469 - AluSg SINE Alu -15 295 3 3491 191 81 15 chr3 79885689 79886286 -138150872 - L1MB7 LINE L1 -543 5641 4937 1269 146 118 92 chr3 79886288 79886614 -138150544 - L1MDa LINE L1 -3824 2716 2386 2119 129 0 7 chr3 79886614 79886909 -138150249 - AluSx SINE Alu -19 293 1 1269 146 118 92 chr3 79886909 79887049 -138150109 - L1MDa LINE L1 -4154 2386 2251 192 40 0 0 chr3 79887070 79887095 -138150063 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 585 153 10 10 chr3 79887095 79887193 -138149965 - AluJ/FLAM SINE Alu -214 98 1 2558 181 55 2 chr3 79887195 79887742 -138149416 - L1MDa LINE L1 -4290 2250 1675 976 208 45 86 chr3 79887775 79888066 -138149092 + MLT1B LTR MaLR 20 297 -93 1683 143 159 75 chr3 79888066 79888438 -138148720 - MER4A LTR ERV1 0 664 262 663 94 0 10 chr3 79888439 79888535 -138148623 - MER4A LTR ERV1 -566 98 4 475 223 11 0 chr3 79888535 79888628 -138148530 + MLT1B LTR MaLR 297 390 0 2729 186 35 25 chr3 79888628 79889322 -138147836 - L1MDa LINE L1 -4858 1682 982 1904 221 45 52 chr3 79889375 79889936 -138147222 - L1MDa LINE L1 -5971 569 13 507 356 75 0 chr3 79891325 79891617 -138145541 - MLT1K LTR MaLR -17 571 258 2832 85 0 0 chr3 79892253 79892618 -138144540 - L1P LINE L1 -5781 365 1 253 240 135 42 chr3 79892722 79892818 -138144340 - MER5A DNA MER1_type -82 107 3 1977 142 10 10 chr3 79893048 79893359 -138143799 + AluSx SINE Alu 1 311 -1 736 227 43 0 chr3 79895201 79895364 -138141794 - MER45A DNA AcHobo -7 171 2 285 236 142 8 chr3 79895482 79895609 -138141549 - LTR16A1 LTR ERVL 0 457 314 464 149 0 0 chr3 79895680 79895754 -138141404 - FLAM_A SINE Alu -36 106 33 257 282 48 40 chr3 79895800 79895924 -138141234 - LTR16A LTR ERVL -158 292 168 185 323 258 0 chr3 79896084 79896177 -138140981 + L2 LINE L2 3196 3312 -1 203 349 66 6 chr3 79897197 79897363 -138139795 + L3b LINE CR1 1226 1401 -182 254 237 0 108 chr3 79897944 79898037 -138139121 - MIR3 SINE MIR -6 202 120 222 260 0 0 chr3 79899795 79899845 -138137313 + (TG)n Simple_repeat Simple_repeat 1 50 0 203 342 13 0 chr3 79899858 79899934 -138137224 + L2 LINE L2 3235 3311 -2 287 247 101 32 chr3 79899964 79900122 -138137036 - L1ME4a LINE L1 -12 6109 5941 1770 155 60 41 chr3 79900178 79900546 -138136612 - THE1C LTR MaLR 0 375 1 406 274 114 50 chr3 79900739 79900958 -138136200 - MIR SINE MIR -14 248 16 1208 172 19 0 chr3 79901112 79901321 -138135837 + MER20 DNA MER1_type 1 213 -6 189 375 132 14 chr3 79901323 79901467 -138135691 + L2 LINE L2 2575 2735 -579 232 333 42 0 chr3 79901481 79901553 -138135605 + MIR SINE MIR 30 104 -158 267 175 0 0 chr3 79902009 79902066 -138135092 + (TCCA)n Simple_repeat Simple_repeat 4 60 0 561 325 68 13 chr3 79902077 79902311 -138134847 + MIR SINE MIR 10 256 -6 2116 134 36 12 chr3 79903573 79903902 -138133256 - MER1B DNA MER1_type 0 337 1 351 308 0 0 chr3 79903924 79904013 -138133145 + MLT1K LTR MaLR 71 159 -408 629 243 30 35 chr3 79904013 79904182 -138132976 - MER58B DNA MER1_type 0 341 174 781 303 73 31 chr3 79904439 79904795 -138132363 + MLT1K LTR MaLR 143 513 -75 749 248 105 15 chr3 79904797 79905063 -138132095 - L1ME3A LINE L1 -1 6169 5880 3558 124 31 20 chr3 79905073 79905686 -138131472 - L1MA5 LINE L1 0 7002 6383 11574 200 43 10 chr3 79905691 79908527 -138128631 - L1MA5 LINE L1 -743 6105 3115 1366 24 12 0 chr3 79908527 79908694 -138128464 - L1PA4 LINE L1 0 6155 5987 11574 200 43 10 chr3 79908694 79909113 -138128045 - L1MA5 LINE L1 -3733 3115 2711 503 224 19 25 chr3 79909112 79909274 -138127884 - L1MCb LINE L1 -5907 138 30 * 1668 189 0 4 chr3 79909444 79909719 -138127439 - AluJo SINE Alu -26 286 13 290 271 7 113 chr3 79960580 79960731 -138076427 + MIR SINE MIR 13 147 -115 586 324 48 34 chr3 79962116 79962663 -138074495 + MLT1K LTR MaLR 2 588 0 207 303 0 0 chr3 79963111 79963177 -138073981 - MIR SINE MIR -48 214 149 315 265 7 113 chr3 79964016 79964167 -138072991 - MIR SINE MIR -115 147 13 416 354 50 29 chr3 79965914 79966154 -138071004 - MIR SINE MIR -16 246 2 201 74 0 0 chr3 79966323 79966350 -138070808 + (CA)n Simple_repeat Simple_repeat 2 28 0 974 148 77 55 chr3 79967080 79967263 -138069895 - AluJo SINE Alu -125 187 1 205 286 233 24 chr3 79967697 79967903 -138069255 + L3 LINE CR1 1110 1358 -219 2125 247 32 19 chr3 79968268 79968319 -138068839 - MLT1F LTR MaLR 0 542 493 1807 195 115 0 chr3 79968319 79968703 -138068455 + MSTA LTR MaLR 1 428 0 2125 247 32 19 chr3 79968703 79969186 -138067972 - MLT1F LTR MaLR -49 493 1 254 328 43 111 chr3 79970202 79970437 -138066721 + L2 LINE L2 3032 3250 -22 391 311 72 10 chr3 79970460 79970669 -138066489 - MLT1K LTR MaLR -35 553 332 424 197 0 117 chr3 79970674 79970811 -138066347 - L1M4 LINE L1 -6173 369 249 214 280 0 27 chr3 79971919 79971994 -138065164 - MIR SINE MIR -7 255 183 4767 87 21 39 chr3 79974015 79974715 -138062443 + LTR12 LTR ERV1 1 688 0 5905 219 53 28 chr3 79974715 79974954 -138062204 + L1M4 LINE L1 26 258 -6388 2001 127 27 20 chr3 79974954 79975254 -138061904 + AluSg SINE Alu 1 302 -8 5905 219 53 28 chr3 79975254 79976885 -138060273 + L1M4 LINE L1 258 1956 -4690 381 153 0 51 chr3 79976883 79976981 -138060177 + L1M4 LINE L1 4969 5061 -1085 * 268 180 0 0 chr3 79976984 79977045 -138060113 + L1M4 LINE L1 5173 5233 -913 288 0 0 0 chr3 79977053 79977085 -138060073 + (CA)n Simple_repeat Simple_repeat 2 33 0 431 196 22 0 chr3 79977116 79977208 -138059950 - L1M4 LINE L1 -1154 4992 4899 2261 181 9 23 chr3 79977274 79977706 -138059452 + MSTB LTR MaLR 1 426 0 1660 216 63 11 chr3 79978351 79978795 -138058363 + MLT1C LTR MaLR 1 467 0 499 244 8 17 chr3 79978812 79978931 -138058227 + L2 LINE L2 3196 3313 0 186 310 100 10 chr3 79979050 79979150 -138058008 + MIR3 SINE MIR 98 206 -2 630 298 44 15 chr3 79979273 79979478 -138057680 - MIR SINE MIR -6 256 46 291 293 10 61 chr3 79979860 79979959 -138057199 + MER5A DNA MER1_type 35 128 -61 267 287 119 20 chr3 79980209 79980310 -138056848 + L2 LINE L2 3140 3250 -22 1953 149 3 0 chr3 79980802 79981111 -138056047 + AluSx SINE Alu 1 310 -2 228 408 0 10 chr3 79981367 79981470 -138055688 + MIR SINE MIR 49 150 -112 216 0 0 0 chr3 79981991 79982015 -138055143 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 288 0 0 0 chr3 79982014 79982046 -138055112 + (TG)n Simple_repeat Simple_repeat 2 33 0 364 283 126 26 chr3 79982077 79982268 -138054890 + MER63A DNA MER1_type 1 210 0 1328 215 110 54 chr3 79982314 79982577 -138054581 - L1MC5 LINE L1 -66 7895 7648 182 61 0 30 chr3 79982577 79982610 -138054548 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 1328 215 110 54 chr3 79982610 79982900 -138054258 - L1MC5 LINE L1 -313 7648 7311 252 0 0 0 chr3 79982922 79982950 -138054208 + (TG)n Simple_repeat Simple_repeat 1 28 0 1763 140 3 39 chr3 79985557 79985865 -138051293 - AluSq SINE Alu -16 297 1 186 229 262 19 chr3 79986452 79986563 -138050595 - MIR SINE MIR -64 144 8 360 266 58 80 chr3 79988839 79989027 -138048131 - MIR SINE MIR -4 258 75 15662 31 1 1 chr3 79989065 79991709 -138045449 - L1PA3 LINE L1 0 6155 3513 1020 261 59 43 chr3 79993352 79993932 -138043226 + MER76 LTR ERV 3 655 -33 500 289 122 11 chr3 79993992 79994172 -138042986 - MIR SINE MIR -10 252 53 219 368 136 0 chr3 79994299 79994424 -138042734 + L2 LINE L2 2918 3059 -213 345 314 43 7 chr3 79994618 79994758 -138042400 + MIR SINE MIR 115 259 -3 519 268 6 65 chr3 79994826 79994994 -138042164 + MLT1I LTR MaLR 57 214 -195 33 0 0 0 chr3 79995260 79995293 -138041865 + AT_rich Low_complexity Low_complexity 1 33 0 2254 82 0 3 chr3 79995293 79995584 -138041574 - AluY SINE Alu -21 290 1 777 274 36 8 chr3 79995717 79995965 -138041193 - MIR SINE MIR 0 262 8 4478 141 27 8 chr3 79996073 79996813 -138040345 + Tigger2 DNA MER2_type 1 754 -1964 1432 155 49 0 chr3 79996895 79997140 -138040018 + Tigger2 DNA MER2_type 2462 2718 0 181 273 127 0 chr3 79997164 79997219 -138039939 + MIR3 SINE MIR 138 199 -9 1267 13 7 0 chr3 79997359 79997508 -138039650 + L1PA4 LINE L1 5711 5860 -295 399 308 131 19 chr3 79997768 79997982 -138039176 + MIR SINE MIR 12 249 -13 180 0 114 0 chr3 79998003 79998038 -138039120 + (TTAA)n Simple_repeat Simple_repeat 2 40 0 478 250 86 33 chr3 79999160 79999312 -138037846 + MLT1I LTR MaLR 346 505 0 243 146 0 0 chr3 79999318 79999359 -138037799 + MER53 DNA DNA 73 113 -76 422 140 40 0 chr3 79999723 79999823 -138037335 + CT-rich Low_complexity Low_complexity 1 104 0 1411 221 50 0 chr3 79999823 80000103 -138037055 - AluJo SINE Alu -7 295 2 1737 160 126 0 chr3 80000105 80000430 -138036728 - MER47A DNA MER2_type 0 366 1 2094 172 37 32 chr3 80000782 80001325 -138035833 - MLT2A2 LTR ERVL 0 554 1 988 252 170 44 chr3 80001785 80002356 -138034802 + HAL1b LINE L1 79 721 -627 907 197 84 15 chr3 80002826 80003029 -138034129 - MER20 DNA MER1_type -2 217 1 1582 174 71 19 chr3 80003449 80003771 -138033387 - MER44D DNA MER2_type 0 609 1 298 291 92 14 chr3 80003917 80004058 -138033100 - L1ME4a LINE L1 -24 6097 5946 343 354 55 0 chr3 80004262 80004389 -138032769 - L2 LINE L2 0 3272 3139 227 211 0 0 chr3 80005132 80005184 -138031974 + L1MC4 LINE L1 6652 6703 -1339 254 284 23 0 chr3 80005218 80005306 -138031852 - L1MC4 LINE L1 -1339 6703 6614 1968 129 16 0 chr3 80005310 80005613 -138031545 - L1PB4 LINE L1 -12 6144 5837 1335 197 26 67 chr3 80006330 80006720 -138030438 - MLT1A2 LTR MaLR 0 374 1 408 198 108 0 chr3 80009313 80009424 -138027734 - L1M LINE L1 -983 5376 5254 3804 203 60 17 chr3 80009425 80010328 -138026830 + L1MD2 LINE L1 5408 6349 -10 1460 275 80 72 chr3 80010480 80011065 -138026093 + L1ME1 LINE L1 337 916 -5345 1674 201 3 0 chr3 80011065 80011359 -138025799 + AluJo SINE Alu 7 301 -11 1460 275 80 72 chr3 80011359 80011619 -138025539 + L1ME1 LINE L1 916 1173 -5088 216 0 0 0 chr3 80011619 80011643 -138025515 + (CA)n Simple_repeat Simple_repeat 2 25 0 1460 275 80 72 chr3 80011643 80012272 -138024886 + L1ME1 LINE L1 1173 1905 -4356 1534 199 4 0 chr3 80012272 80012591 -138024567 + AluJo SINE Alu 11 330 0 1460 275 80 72 chr3 80012591 80012989 -138024169 + L1ME1 LINE L1 1905 2299 -3962 189 0 0 0 chr3 80013983 80014004 -138023154 + (TA)n Simple_repeat Simple_repeat 1 21 0 440 224 182 0 chr3 80014009 80014152 -138023006 + MER112 DNA MER1_type 80 248 -12 634 293 73 51 chr3 80014703 80014715 -138022443 - L1MC4 LINE L1 -1850 5958 5948 378 0 0 0 chr3 80014715 80014757 -138022401 + (CA)n Simple_repeat Simple_repeat 1 42 0 634 293 73 51 chr3 80014757 80015390 -138021768 - L1MC4 LINE L1 -1860 5948 5299 621 246 0 49 chr3 80015515 80015739 -138021419 + L1MA9 LINE L1 6062 6274 -38 1302 213 35 83 chr3 80015792 80016056 -138021102 + L1ME1 LINE L1 2304 2579 -3501 4168 173 65 57 chr3 80016056 80017118 -138020040 - MER11C LTR ERVK 0 1071 1 2418 99 0 0 chr3 80017123 80017435 -138019723 + AluSx SINE Alu 1 312 0 1302 213 35 83 chr3 80017435 80017733 -138019425 + L1ME1 LINE L1 2583 2845 -3235 * 2942 164 13 6 chr3 80017732 80018256 -138018902 + L1MB3 LINE L1 5628 6155 -28 3735 255 90 7 chr3 80018284 80019839 -138017319 + L1ME1 LINE L1 2849 4712 -1368 2152 143 89 2 chr3 80019846 80020294 -138016864 - MER1A DNA MER1_type 0 529 1 514 242 64 0 chr3 80020299 80020456 -138016702 + L1ME1 LINE L1 4717 4883 -1197 1547 224 122 29 chr3 80020469 80020911 -138016247 + MLT1D LTR MaLR 23 505 0 2938 210 39 56 chr3 80020973 80022186 -138014972 + L1ME1 LINE L1 4916 6095 -5 1795 149 23 23 chr3 80022377 80022679 -138014479 + AluJo SINE Alu 1 302 -10 301 285 51 29 chr3 80022798 80022935 -138014223 + MIR SINE MIR 121 260 -2 256 243 62 38 chr3 80023153 80023383 -138013775 - L1MEd LINE L1 -5293 826 561 438 245 128 87 chr3 80023792 80023988 -138013170 + MLT1K LTR MaLR 374 577 -11 231 54 0 0 chr3 80024342 80024379 -138012779 + L1MCa LINE L1 1912 1948 -4478 601 175 32 8 chr3 80024387 80024513 -138012645 - L1PB4 LINE L1 -3 6153 6025 560 275 25 76 chr3 80024613 80024849 -138012309 + MIR SINE MIR 39 262 0 21 36 0 0 chr3 80025519 80025547 -138011611 + AT_rich Low_complexity Low_complexity 1 28 0 180 279 0 0 chr3 80027266 80027327 -138009831 + CT-rich Low_complexity Low_complexity 1 61 0 2202 111 0 7 chr3 80028619 80028917 -138008241 - AluSg SINE Alu -14 296 1 904 305 63 31 chr3 80029408 80029897 -138007261 - MLT1H LTR MaLR -2 547 43 26 0 0 0 chr3 80029958 80029984 -138007174 + AT_rich Low_complexity Low_complexity 1 26 0 275 293 128 53 chr3 80030083 80030216 -138006942 - MIR SINE MIR 0 262 120 1162 243 97 27 chr3 80031055 80031466 -138005692 - L1ME3A LINE L1 -9 6161 5722 2381 149 10 33 chr3 80031466 80031862 -138005296 - MSTB LTR MaLR 0 426 40 429 272 77 6 chr3 80031862 80032031 -138005127 - L1ME3A LINE L1 -469 5701 5521 2027 124 0 14 chr3 80033048 80033360 -138003798 - AluSc SINE Alu 0 308 1 193 194 0 0 chr3 80033543 80033574 -138003584 + MIR SINE MIR 220 250 -12 312 308 45 45 chr3 80033587 80033720 -138003438 - MIR SINE MIR -86 176 44 35231 107 13 11 chr3 80033756 80039883 -137997275 + L1PA6 LINE L1 11 6149 -5 4967 183 27 47 chr3 80039943 80040767 -137996391 + Tigger6a DNA MER2_type 6 845 -752 1539 186 0 52 chr3 80040767 80041057 -137996101 - AluJo SINE Alu -37 275 1 4967 183 27 47 chr3 80041057 80041092 -137996066 + Tigger6a DNA MER2_type 845 879 -718 1185 202 52 85 chr3 80041092 80041479 -137995679 - MLT1A2 LTR MaLR 0 374 1 4967 183 27 47 chr3 80041479 80041718 -137995440 + Tigger6a DNA MER2_type 879 1083 0 234 0 0 0 chr3 80042093 80042119 -137995039 + (TA)n Simple_repeat Simple_repeat 2 27 0 2115 114 7 0 chr3 80042119 80042416 -137994742 - AluSq SINE Alu -5 308 10 220 373 31 67 chr3 80042502 80042727 -137994431 + L2 LINE L2 2707 2923 -391 257 299 41 34 chr3 80042863 80043010 -137994148 - LTR16C LTR ERVL 0 491 344 404 245 59 0 chr3 80043241 80043343 -137993815 + Tigger6 DNA MER2_type 1117 1224 -373 309 207 75 35 chr3 80043740 80043914 -137993244 + L1ME LINE L1 728 908 -5211 28 0 0 0 chr3 80044020 80044048 -137993110 + AT_rich Low_complexity Low_complexity 1 28 0 4326 188 12 18 chr3 80044050 80044778 -137992380 + L1 LINE L1 3454 4177 -1969 984 54 78 0 chr3 80044778 80044907 -137992251 - MER85 DNA T2_type 0 139 1 4326 188 12 18 chr3 80044907 80045091 -137992067 + L1 LINE L1 4177 4361 -1785 628 130 0 0 chr3 80045078 80045178 -137991980 + L1MA3 LINE L1 5724 5823 -481 * 6499 81 18 0 chr3 80045181 80046658 -137990500 + L1PA8 LINE L1 4675 6168 -4 2662 124 41 19 chr3 80046663 80047129 -137990029 + L1MA3 LINE L1 5815 6290 -15 358 302 47 0 chr3 80047146 80047315 -137989843 + L1ME LINE L1 2353 2529 -3600 745 275 69 103 chr3 80047849 80048333 -137988825 + L1ME LINE L1 3732 4231 -1898 225 0 0 0 chr3 80048333 80048358 -137988800 + (TC)n Simple_repeat Simple_repeat 2 26 0 745 275 69 103 chr3 80048358 80048863 -137988295 + L1ME LINE L1 4231 4661 -1468 207 0 0 0 chr3 80048863 80048886 -137988272 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 745 275 69 103 chr3 80048886 80049304 -137987854 + L1ME LINE L1 4661 5092 -1037 1556 189 108 28 chr3 80049315 80049743 -137987415 - MLT1C LTR MaLR 0 467 6 2276 130 8 8 chr3 80049753 80050108 -137987050 - THE1A LTR MaLR 0 355 1 456 292 44 34 chr3 80050146 80050662 -137986496 + L1ME LINE L1 5165 5837 -308 26 0 0 0 chr3 80050909 80050935 -137986223 + AT_rich Low_complexity Low_complexity 1 26 0 696 323 30 13 chr3 80051016 80051251 -137985907 + MIR SINE MIR 13 251 -11 27 29 0 0 chr3 80051581 80051615 -137985543 + AT_rich Low_complexity Low_complexity 1 34 0 739 297 40 5 chr3 80052810 80053032 -137984126 + MIR SINE MIR 1 230 -32 197 257 0 69 chr3 80053277 80053378 -137983780 + MIR SINE MIR 137 230 -32 192 370 116 29 chr3 80054028 80054201 -137982957 + L2 LINE L2 2807 2994 -319 285 29 0 0 chr3 80054240 80054274 -137982884 + (CAA)n Simple_repeat Simple_repeat 2 35 0 328 207 0 73 chr3 80054303 80054385 -137982773 + MER20 DNA MER1_type 5 80 -139 1581 192 30 27 chr3 80054385 80054754 -137982404 + L1MA8 LINE L1 4107 4476 -1670 2116 113 11 0 chr3 80055341 80055648 -137981510 - AluSx SINE Alu 0 310 1 844 169 0 1 chr3 80056200 80056343 -137980815 + MER33 DNA MER1_type 1 137 -88 6189 128 32 3 chr3 80056344 80057443 -137979715 + L1MA8 LINE L1 5156 6286 -5 2037 138 0 26 chr3 80057451 80057756 -137979402 - AluSx SINE Alu -15 297 1 626 177 34 77 chr3 80057771 80057980 -137979178 + MER33 DNA MER1_type 125 324 0 269 319 55 0 chr3 80058399 80058490 -137978668 + MIR SINE MIR 167 262 0 565 105 39 137 chr3 80058606 80058759 -137978399 + L1MA4A LINE L1 6166 6303 0 562 278 72 18 chr3 80058761 80058984 -137978174 + L2 LINE L2 3074 3308 -5 288 271 0 35 chr3 80059137 80059222 -137977936 - MIR3 SINE MIR -27 181 100 368 386 43 9 chr3 80059273 80059506 -137977652 - MIR SINE MIR -14 248 8 22 35 0 0 chr3 80059988 80060017 -137977141 + AT_rich Low_complexity Low_complexity 1 29 0 1236 211 111 17 chr3 80060382 80060680 -137976478 - MLT1D LTR MaLR 0 505 180 195 254 0 0 chr3 80061182 80061245 -137975913 + (TA)n Simple_repeat Simple_repeat 1 63 0 557 263 16 101 chr3 80062587 80062834 -137974324 - L2 LINE L2 -5 3308 3083 283 351 39 0 chr3 80064541 80064695 -137972463 + MIR SINE MIR 102 261 -1 401 331 45 11 chr3 80065016 80065194 -137971964 + LTR16C LTR ERVL 195 378 -113 627 50 0 0 chr3 80065871 80065951 -137971207 - MADE1 DNA Mariner 0 80 1 2219 105 0 3 chr3 80066194 80066489 -137970669 + AluSg SINE Alu 1 294 -16 260 221 15 29 chr3 80066676 80066744 -137970414 + Charlie8 DNA MER1_type 2341 2407 -10 248 195 0 134 chr3 80066896 80066948 -137970210 - MIR3 SINE MIR -53 155 116 2094 140 17 0 chr3 80066948 80067306 -137969852 - L1MA4A LINE L1 0 6303 5940 248 195 0 134 chr3 80067306 80067335 -137969823 - MIR3 SINE MIR -92 116 85 602 272 189 23 chr3 80068301 80068480 -137968678 + L2 LINE L2 2612 2760 -553 854 222 0 26 chr3 80068480 80068674 -137968484 + MER5A DNA MER1_type 1 189 0 602 272 189 23 chr3 80068674 80068832 -137968326 + L2 LINE L2 2760 2989 -324 184 262 115 16 chr3 80068888 80068949 -137968209 - L2 LINE L2 0 3313 3247 773 262 21 69 chr3 80069076 80069138 -137968020 + L2 LINE L2 2997 3060 -253 1402 226 65 25 chr3 80069138 80069585 -137967573 - MLT1C LTR MaLR 0 467 3 773 262 21 69 chr3 80069585 80069854 -137967304 + L2 LINE L2 3060 3312 -1 25 0 0 0 chr3 80069926 80069951 -137967207 + AT_rich Low_complexity Low_complexity 1 25 0 2416 63 0 3 chr3 80070067 80070368 -137966790 - AluY SINE Alu -5 306 7 204 277 108 15 chr3 80070563 80070628 -137966530 - L2 LINE L2 -1 3312 3242 505 289 116 5 chr3 80070951 80071141 -137966017 + MIR SINE MIR 45 255 -7 555 53 0 0 chr3 80073696 80073771 -137963387 + (CA)n Simple_repeat Simple_repeat 1 75 0 405 0 0 0 chr3 80074042 80074087 -137963071 + (TG)n Simple_repeat Simple_repeat 2 46 0 473 336 0 7 chr3 80074151 80074291 -137962867 - MIR3 SINE MIR -26 182 44 385 173 53 0 chr3 80074379 80074454 -137962704 + MADE1 DNA Mariner 1 79 -1 433 315 69 25 chr3 80074515 80074791 -137962367 + L2 LINE L2 3008 3295 -18 23 33 0 0 chr3 80074806 80074836 -137962322 + AT_rich Low_complexity Low_complexity 1 30 0 345 326 45 8 chr3 80075840 80075972 -137961186 + MIR SINE MIR 28 164 -98 2967 157 19 42 chr3 80075989 80076607 -137960551 + MLT2B3 LTR ERVL 1 519 -1 685 283 54 37 chr3 80076614 80076911 -137960247 + MLT1I LTR MaLR 21 322 -87 471 264 41 0 chr3 80077239 80077360 -137959798 - MER58A DNA MER1_type 0 162 37 294 273 11 0 chr3 80077554 80077642 -137959516 - MLT1K LTR MaLR -356 232 144 322 287 28 0 chr3 80077911 80078019 -137959139 - L2 LINE L2 -803 2511 2401 440 306 12 69 chr3 80078913 80079086 -137958072 + MIR3 SINE MIR 10 172 -36 271 183 0 50 chr3 80079134 80079194 -137957964 - MLT1L LTR MaLR -3 612 556 181 167 0 0 chr3 80079752 80079782 -137957376 + MIR SINE MIR 219 248 -14 884 230 0 0 chr3 80079925 80080103 -137957055 - MER5B DNA MER1_type 0 178 1 357 307 0 0 chr3 80080616 80080704 -137956454 - L2 LINE L2 0 3313 3226 183 321 60 71 chr3 80080865 80081049 -137956109 - L2 LINE L2 -421 2893 2712 210 284 0 116 chr3 80081108 80081173 -137955985 - L2 LINE L2 -300 2974 2920 2042 154 16 0 chr3 80081173 80081478 -137955680 + AluSx SINE Alu 1 310 -2 210 284 0 116 chr3 80081478 80081507 -137955651 - L2 LINE L2 -354 2920 2889 341 264 19 57 chr3 80081977 80082083 -137955075 - MIR SINE MIR -142 120 19 237 209 29 29 chr3 80082639 80082744 -137954414 + A-rich Low_complexity Low_complexity 2 106 0 399 285 75 61 chr3 80082998 80083588 -137953570 + MLT1L LTR MaLR 17 606 -9 744 200 161 6 chr3 80083720 80083900 -137953258 - MER3 DNA MER1_type 0 209 2 239 140 20 0 chr3 80083900 80083950 -137953208 + CT-rich Low_complexity Low_complexity 1 51 0 204 40 0 0 chr3 80083950 80083975 -137953183 + (TG)n Simple_repeat Simple_repeat 2 26 0 384 359 25 19 chr3 80084021 80084180 -137952978 + MIR3 SINE MIR 43 202 -6 2035 141 20 0 chr3 80084445 80084749 -137952409 - AluSq SINE Alu -3 310 1 420 245 82 34 chr3 80084835 80084982 -137952176 - L2 LINE L2 0 3313 3160 840 333 76 25 chr3 80085088 80085616 -137951542 - L2 LINE L2 -376 2938 2384 214 182 0 0 chr3 80086229 80086273 -137950885 + T-rich Low_complexity Low_complexity 4 47 0 533 275 166 54 chr3 80086415 80086746 -137950412 - MLT1I LTR MaLR -3 406 39 660 295 42 30 chr3 80087369 80087606 -137949552 + MIR SINE MIR 13 252 -10 276 326 112 10 chr3 80088079 80088177 -137948981 + L2 LINE L2 3204 3311 -2 27 29 0 0 chr3 80089548 80089582 -137947576 + AT_rich Low_complexity Low_complexity 1 34 0 216 0 0 0 chr3 80091979 80092003 -137945155 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 213 307 13 0 chr3 80092218 80092293 -137944865 + C-rich Low_complexity Low_complexity 2 77 0 312 318 148 28 chr3 80093069 80093286 -137943872 - MIR SINE MIR -1 261 19 215 258 201 35 chr3 80093451 80093583 -137943575 + MIR SINE MIR 2 153 -55 183 80 0 0 chr3 80094563 80094588 -137942570 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 628 294 59 24 chr3 80096813 80097153 -137940005 + L1ME4a LINE L1 5546 5897 -224 273 253 71 10 chr3 80097582 80097681 -137939477 - MER103 DNA DNA -43 123 19 186 300 57 0 chr3 80097764 80097834 -137939324 + L2 LINE L2 3191 3264 -8 261 226 0 0 chr3 80097898 80097951 -137939207 + (TG)n Simple_repeat Simple_repeat 2 54 0 2339 106 0 3 chr3 80099935 80100247 -137936911 - AluSq SINE Alu -2 311 1 1794 142 53 30 chr3 80100923 80101021 -137936137 + MER7A DNA MER2_type 2 96 -2942 725 111 0 0 chr3 80101021 80101129 -137936029 - L1PA13 LINE L1 -5 6158 6051 1794 142 53 30 chr3 80101129 80101369 -137935789 + MER7A DNA MER2_type 96 346 0 308 352 16 0 chr3 80102076 80102204 -137934954 - MER117 DNA MER1_type -66 131 2 238 194 0 83 chr3 80102300 80102372 -137934786 + MER3 DNA MER1_type 144 209 0 300 313 55 43 chr3 80102535 80102698 -137934460 - L2 LINE L2 -191 3081 2917 239 267 33 0 chr3 80103293 80103353 -137933805 + L2 LINE L2 3251 3312 -1 * 320 327 107 6 chr3 80103330 80103498 -137933660 - MIR SINE MIR -19 243 59 218 283 71 35 chr3 80103527 80103640 -137933518 - MIR SINE MIR -14 248 132 225 65 0 0 chr3 80104425 80104456 -137932702 + (CAA)n Simple_repeat Simple_repeat 2 32 0 298 306 14 35 chr3 80104485 80104629 -137932529 - MER117 DNA MER1_type 0 197 57 207 291 18 0 chr3 80104701 80104756 -137932402 - MIR SINE MIR -21 241 186 2321 122 0 0 chr3 80105563 80105875 -137931283 + AluSx SINE Alu 1 312 0 203 156 0 0 chr3 80106349 80106381 -137930777 + GA-rich Low_complexity Low_complexity 4 35 0 321 0 61 0 chr3 80107472 80107521 -137929637 + (TA)n Simple_repeat Simple_repeat 1 52 0 798 256 24 57 chr3 80107522 80107768 -137929390 - MIR SINE MIR -6 256 19 809 298 110 6 chr3 80107845 80108208 -137928950 - MLT1I LTR MaLR 0 409 9 306 0 0 0 chr3 80109468 80109502 -137927656 + (CA)n Simple_repeat Simple_repeat 1 34 0 1389 259 60 77 chr3 80109736 80110707 -137926451 + L2 LINE L2 2363 3313 0 780 236 30 78 chr3 80111146 80111417 -137925741 - MIR SINE MIR 0 262 5 2059 137 76 8 chr3 80111473 80111853 -137925305 - MSTA LTR MaLR 0 428 23 618 354 23 11 chr3 80112214 80112474 -137924684 - L3 LINE CR1 -612 965 703 1862 121 0 0 chr3 80112721 80112998 -137924160 + AluSx SINE Alu 36 312 0 1333 186 49 11 chr3 80113012 80113112 -137924046 - Charlie5 DNA MER1_type -28 2596 2501 1211 206 76 68 chr3 80113112 80113407 -137923751 - MLT1D LTR MaLR -2 503 201 1715 192 3 13 chr3 80113407 80113720 -137923438 - AluJo SINE Alu -2 310 1 1211 206 76 68 chr3 80113720 80113923 -137923235 - MLT1D LTR MaLR -304 201 1 1333 186 49 11 chr3 80113923 80114172 -137922986 - Charlie5 DNA MER1_type -123 2501 2234 346 163 12 0 chr3 80114169 80114249 -137922909 - Charlie5 DNA MER1_type -2485 127 47 * 3865 65 13 11 chr3 80114934 80115458 -137921700 - L1PA7 LINE L1 -2 6152 5628 847 246 42 17 chr3 80118955 80119191 -137917967 - MIR SINE MIR -1 261 20 2085 206 81 39 chr3 80120179 80120825 -137916333 + L1ME1 LINE L1 5452 6128 -38 2231 111 7 0 chr3 80120825 80121123 -137916035 + AluSg SINE Alu 1 300 -10 2085 206 81 39 chr3 80121123 80121145 -137916013 + L1ME1 LINE L1 6128 6148 -18 553 304 60 29 chr3 80121628 80122041 -137915117 - L2 LINE L2 -85 3187 2763 188 397 0 16 chr3 80122301 80122422 -137914736 - L2 LINE L2 -524 2790 2672 24 0 0 0 chr3 80122675 80122699 -137914459 + AT_rich Low_complexity Low_complexity 1 24 0 247 202 11 38 chr3 80323062 80323250 -137713908 + A-rich Low_complexity Low_complexity 1 182 0 1783 164 0 14 chr3 80323319 80323450 -137713708 + AluSg SINE Alu 3 134 -176 2044 95 7 0 chr3 80323450 80323723 -137713435 + AluY SINE Alu 37 311 0 1783 164 0 14 chr3 80323723 80323884 -137713274 + AluSg SINE Alu 134 291 -19 219 146 0 0 chr3 80324231 80324272 -137712886 + (A)n Simple_repeat Simple_repeat 1 41 0 25 31 0 0 chr3 80324372 80324404 -137712754 + AT_rich Low_complexity Low_complexity 1 32 0 1061 117 5 51 chr3 80324567 80324764 -137712394 + L1PA13 LINE L1 5976 6163 0 769 112 0 0 chr3 80324916 80325023 -137712135 + U6 snRNA snRNA 1 107 0 2109 123 89 9 chr3 80325023 80325518 -137711640 + L1P3 LINE L1 1647 2308 -4153 31 26 0 0 chr3 80326297 80326335 -137710823 + AT_rich Low_complexity Low_complexity 1 38 0 1067 242 94 9 chr3 80326526 80327091 -137710067 + MLT2F LTR ERVL 1 655 -8 481 293 88 4 chr3 80327218 80327481 -137709677 + L1M4 LINE L1 2454 2738 -3408 2422 74 0 16 chr3 80327611 80327922 -137709236 + AluY SINE Alu 1 306 -5 718 197 0 7 chr3 80327986 80328128 -137709030 - FLAM_C SINE Alu -2 141 1 1886 148 20 20 chr3 80328723 80329080 -137708078 - L1MB8 LINE L1 -9 6169 5813 340 242 140 0 chr3 80329652 80329766 -137707392 - FLAM_A SINE Alu -18 115 1 2338 76 0 10 chr3 80329781 80330083 -137707075 - AluY SINE Alu -12 299 1 263 266 0 0 chr3 80330168 80330232 -137706926 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 1430 214 11 14 chr3 80330248 80330529 -137706629 - AluJo SINE Alu -32 280 1 880 200 109 3 chr3 80333322 80333652 -137703506 + Tigger5 DNA MER2_type 2 2323 0 451 212 53 48 chr3 80333786 80333975 -137703183 - L1MA9 LINE L1 -34 6278 6089 193 208 21 21 chr3 80334164 80334212 -137702946 - L2 LINE L2 -595 2719 2672 304 362 71 31 chr3 80335387 80335611 -137701547 + MIR SINE MIR 22 254 -8 202 350 0 0 chr3 80335691 80335751 -137701407 - MIR SINE MIR -128 134 75 1278 234 116 32 chr3 80335956 80336076 -137701082 + MLT1D LTR MaLR 1 110 -395 2135 86 31 14 chr3 80336076 80336368 -137700790 + AluY SINE Alu 1 297 -14 1278 234 116 32 chr3 80336368 80336713 -137700445 + MLT1D LTR MaLR 110 505 0 225 248 129 40 chr3 80337611 80337712 -137699446 + MIR SINE MIR 34 143 -65 406 258 8 25 chr3 80338096 80338216 -137698942 - FLAM_A SINE Alu -11 131 14 1528 197 14 4 chr3 80339564 80339843 -137697315 + AluJo SINE Alu 1 282 -30 180 279 0 0 chr3 80339998 80340041 -137697117 - L2 LINE L2 -94 3219 3177 892 176 22 146 chr3 80341489 80341669 -137695489 - MER33 DNA MER1_type -2261 324 212 515 190 130 0 chr3 80341669 80341769 -137695389 + FLAM_A SINE Alu 4 116 -17 892 176 22 146 chr3 80341769 80341958 -137695200 - MER33 DNA MER1_type -2373 212 1 300 336 104 46 chr3 80342186 80342859 -137694299 + L2 LINE L2 2128 2839 -475 729 239 6 17 chr3 80343677 80343857 -137693301 + MER58A DNA MER1_type 40 217 -7 347 143 0 0 chr3 80344023 80344079 -137693079 - FLAM_A SINE Alu -42 91 36 206 299 78 0 chr3 80344636 80344713 -137692445 - L2 LINE L2 -1 3312 3230 1169 103 0 0 chr3 80346607 80346772 -137690386 - AluY SINE Alu -12 299 135 189 0 0 0 chr3 80347419 80347440 -137689718 + (T)n Simple_repeat Simple_repeat 1 21 0 182 154 26 0 chr3 80348103 80348142 -137689016 - L2 LINE L2 -348 2966 2927 732 251 198 20 chr3 80348925 80349364 -137687794 - L1MC4a LINE L1 -1949 5859 5343 324 306 31 0 chr3 80349374 80349472 -137687686 + MIR SINE MIR 157 257 -5 1711 111 103 40 chr3 80349522 80349873 -137687285 + THE1C LTR MaLR 1 373 -2 199 268 70 14 chr3 80349893 80349964 -137687194 + MIR SINE MIR 62 136 -126 269 375 22 15 chr3 80350697 80350833 -137686325 + L2 LINE L2 3166 3302 -11 329 295 54 62 chr3 80352068 80352326 -137684832 - MLT1J LTR MaLR -19 492 237 506 295 195 0 chr3 80352944 80353154 -137684004 - MIR SINE MIR -11 251 1 21 0 0 0 chr3 80353299 80353320 -137683838 + AT_rich Low_complexity Low_complexity 1 21 0 5737 44 8 0 chr3 80353574 80354321 -137682837 - L1PA3 LINE L1 -1933 4213 3461 9896 25 1 0 chr3 80354321 80356256 -137680902 + L1PA3 LINE L1 4216 6155 0 450 258 47 16 chr3 80356271 80356399 -137680759 + L2 LINE L2 3180 3311 -2 276 281 248 14 chr3 80356984 80357194 -137679964 - MIR SINE MIR -3 259 1 436 210 35 28 chr3 80358006 80358149 -137679009 - L1MC5 LINE L1 -112 7849 7706 821 156 66 0 chr3 80358187 80358472 -137678686 + L1MA9 LINE L1 5892 6291 -21 2046 211 104 9 chr3 80358474 80359039 -137678119 + L1MC4a LINE L1 7169 7787 -21 21 36 0 0 chr3 80359124 80359152 -137678006 + AT_rich Low_complexity Low_complexity 1 28 0 255 287 29 85 chr3 80359158 80359430 -137677728 - HAL1 LINE L1 -6 2501 2245 220 214 57 43 chr3 80360178 80360248 -137676910 + MIR SINE MIR 4 74 -188 192 282 90 39 chr3 80361107 80361185 -137675973 - MIR SINE MIR -13 249 168 1439 226 126 116 chr3 80361535 80362665 -137674493 - L1MC4 LINE L1 -6 8036 6890 2193 116 0 32 chr3 80362665 80362839 -137674319 - AluSx SINE Alu -12 300 139 2875 13 0 0 chr3 80362839 80363153 -137674005 - AluYb8 SINE Alu -4 314 1 2193 116 0 32 chr3 80363153 80363288 -137673870 - AluSx SINE Alu -173 139 1 1439 226 126 116 chr3 80363288 80363469 -137673689 - L1MC4 LINE L1 -1152 6890 6712 2082 223 92 39 chr3 80363576 80364120 -137673038 - L1MD2 LINE L1 -221 6138 5550 1774 167 27 7 chr3 80364120 80364419 -137672739 - AluJb SINE Alu -7 305 1 2082 223 92 39 chr3 80364419 80364550 -137672608 - L1MD2 LINE L1 -809 5550 5427 369 224 112 41 chr3 80364680 80364850 -137672308 - L1MD2 LINE L1 -1601 4545 4364 1634 183 4 11 chr3 80364907 80365180 -137671978 + AluJo SINE Alu 1 271 -41 521 282 81 12 chr3 80365180 80365522 -137671636 + L1ME3 LINE L1 5494 5860 -302 414 236 46 29 chr3 80365586 80365760 -137671398 + L1MC4 LINE L1 7865 8041 -1 24 0 0 0 chr3 80366103 80366127 -137671031 + AT_rich Low_complexity Low_complexity 1 24 0 1811 138 0 0 chr3 80366342 80366602 -137670556 - AluSq SINE Alu -53 260 1 1728 205 51 10 chr3 80366748 80367370 -137669788 - L1M3 LINE L1 -716 5464 4822 1635 154 61 4 chr3 80367526 80367805 -137669353 - AluSx SINE Alu -17 295 1 2462 77 0 0 chr3 80367857 80368156 -137669002 + AluY SINE Alu 1 299 -12 25587 94 11 2 chr3 80369179 80373956 -137663202 - L1PA7 LINE L1 -13 6141 1323 769 112 0 0 chr3 80373956 80374063 -137663095 - U6 snRNA snRNA 0 107 1 3263 125 6 18 chr3 80374215 80374759 -137662399 - L1PA13 LINE L1 0 6163 5627 2643 167 15 15 chr3 80374759 80375303 -137661855 - L1PA13 LINE L1 -1393 4753 4210 450 150 0 0 chr3 80375304 80375384 -137661774 - L1PA13 LINE L1 -2188 3958 3879 1164 114 0 0 chr3 80376076 80376234 -137660924 - AluSg/x SINE Alu -22 290 133 1842 94 20 0 chr3 80376234 80376489 -137660669 - AluY SINE Alu 0 311 52 1925 107 35 28 chr3 80376627 80376916 -137660242 + AluSq SINE Alu 7 297 -16 2139 100 11 98 chr3 80377000 80377369 -137659789 + MER1B DNA MER1_type 1 337 0 230 294 39 69 chr3 80377431 80377533 -137659625 + MIR SINE MIR 23 121 -87 1967 145 26 0 chr3 80377654 80377958 -137659200 + AluJb SINE Alu 1 312 0 2231 102 7 0 chr3 80379193 80379486 -137657672 + AluSg SINE Alu 3 297 -13 26 30 0 0 chr3 80380009 80380042 -137657116 + AT_rich Low_complexity Low_complexity 1 33 0 2283 101 0 10 chr3 80380395 80380701 -137656457 + AluSq SINE Alu 1 303 -10 306 320 30 0 chr3 80380860 80380960 -137656198 + MIR SINE MIR 40 142 -66 1153 195 14 0 chr3 80380961 80381176 -137655982 + MER58A DNA MER1_type 6 223 -1 809 219 33 0 chr3 80381346 80381529 -137655629 + MER5A DNA MER1_type 1 189 0 300 299 29 15 chr3 80382393 80382530 -137654628 + (TATG)n Simple_repeat Simple_repeat 3 141 0 1887 156 10 3 chr3 80382550 80382838 -137654320 - AluSx SINE Alu -21 291 2 24 32 0 0 chr3 80383278 80383309 -137653849 + AT_rich Low_complexity Low_complexity 1 31 0 204 67 0 0 chr3 80383593 80383623 -137653535 + (T)n Simple_repeat Simple_repeat 1 30 0 964 261 58 0 chr3 80385144 80385370 -137651788 + MIR SINE MIR 14 252 -10 517 309 17 0 chr3 80385635 80385813 -137651345 + Charlie8 DNA MER1_type 85 265 -2152 426 194 39 0 chr3 80386323 80386426 -137650732 - MER20 DNA MER1_type -57 162 56 274 349 83 0 chr3 80386701 80386833 -137650325 + MIR3 SINE MIR 39 181 -27 1759 228 43 77 chr3 80387008 80387657 -137649501 - MLT1E1 LTR MaLR -4 650 24 1720 97 15 12 chr3 80388799 80389321 -137647837 - L1PA10 LINE L1 -1 6482 5802 2095 147 10 0 chr3 80389321 80389628 -137647530 - AluSg SINE Alu 0 310 1 1720 97 15 12 chr3 80389628 80389826 -137647332 - L1PA10 LINE L1 -681 5802 5606 27728 115 16 62 chr3 80389834 80396313 -137640845 - L1PA8 LINE L1 0 6172 1 189 0 0 0 chr3 80396313 80396334 -137640824 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 21650 180 21 32 chr3 80396334 80401982 -137635176 - L1PA10 LINE L1 -849 5612 10 21 0 0 0 chr3 80401994 80402015 -137635143 + AT_rich Low_complexity Low_complexity 1 21 0 1503 166 55 17 chr3 80402015 80402304 -137634854 - AluJo SINE Alu -12 300 1 2164 88 29 0 chr3 80403100 80403373 -137633785 - AluSp SINE Alu -4 309 29 3100 170 65 20 chr3 80403443 80404149 -137633009 - L1MB4 LINE L1 -1 6179 5442 823 165 6 24 chr3 80404274 80404438 -137632720 + MLT1A1 LTR MaLR 1 161 -204 653 210 87 0 chr3 80404503 80404641 -137632517 + MER5A DNA MER1_type 31 180 -9 665 165 17 0 chr3 80405176 80405291 -137631867 - MSTD LTR MaLR 0 396 280 769 209 0 0 chr3 80405311 80405464 -137631694 - MSTD LTR MaLR -243 153 1 2229 168 24 162 chr3 80406723 80406899 -137630259 - LTR8 LTR ERV1 0 691 492 1526 167 4 29 chr3 80406899 80407174 -137629984 + AluJb SINE Alu 21 288 -24 2229 168 24 162 chr3 80407174 80407211 -137629947 - LTR8 LTR ERV1 -199 492 452 1819 155 4 0 chr3 80407211 80407488 -137629670 + 7SLRNA srpRNA srpRNA 2 279 -41 2229 168 24 162 chr3 80407488 80407533 -137629625 - LTR8 LTR ERV1 -239 452 402 468 0 0 0 chr3 80407533 80407585 -137629573 + (TG)n Simple_repeat Simple_repeat 2 53 0 2229 168 24 162 chr3 80407585 80408126 -137629032 - LTR8 LTR ERV1 -289 402 1 301 243 122 33 chr3 80408197 80408378 -137628780 - MER34C LTR ERV1 -4 581 385 715 323 99 51 chr3 80408699 80409602 -137627556 - L2 LINE L2 -4 3268 2296 258 128 21 0 chr3 80411065 80411112 -137626046 - L1MA10 LINE L1 -24 6310 6263 237 271 78 39 chr3 80411289 80411418 -137625740 + L1MC4 LINE L1 7143 7276 -766 216 254 68 0 chr3 80412374 80412433 -137624725 + MIR SINE MIR 200 262 0 409 147 0 0 chr3 80413135 80413203 -137623955 - AluJ/FLAM SINE Alu -229 83 16 241 264 0 0 chr3 80413323 80413376 -137623782 - L2 LINE L2 -10 3303 3251 790 252 33 14 chr3 80413477 80413687 -137623471 - L2 LINE L2 -808 2506 2293 254 205 51 26 chr3 80413687 80413765 -137623393 + Charlie7 DNA MER1_type 527 606 -2006 25 31 0 0 chr3 80414349 80414381 -137622777 + AT_rich Low_complexity Low_complexity 1 32 0 2163 114 0 19 chr3 80415278 80415593 -137621565 - AluSx SINE Alu -3 309 1 313 208 39 13 chr3 80415808 80415885 -137621273 + HsTC2 DNA Tc2 1 79 -1819 842 159 0 0 chr3 80415935 80416067 -137621091 - FLAM_C SINE Alu -1 132 1 251 199 107 46 chr3 80416346 80416477 -137620681 - HAL1b LINE L1 -864 484 346 334 261 49 141 chr3 80417611 80417658 -137619500 + MLT1I LTR MaLR 115 165 -244 1977 160 0 3 chr3 80417658 80417971 -137619187 - AluSx SINE Alu 0 312 1 334 261 49 141 chr3 80417971 80418229 -137618929 + MLT1I LTR MaLR 165 392 -17 194 324 148 37 chr3 80418984 80419092 -137618066 - L2 LINE L2 0 3272 3153 222 311 0 0 chr3 80419255 80419316 -137617842 + GA-rich Low_complexity Low_complexity 1 61 0 366 189 24 55 chr3 80421081 80421208 -137615950 - L1MC5 LINE L1 -33 7928 7806 1357 231 177 9 chr3 80421259 80421853 -137615305 - L1ME3 LINE L1 -8 6154 5435 2360 188 33 73 chr3 80421871 80422505 -137614653 - L1MB4 LINE L1 0 6180 5572 567 206 105 10 chr3 80422509 80422732 -137614426 - L1MB4 LINE L1 -735 5435 5193 * 2433 202 45 130 chr3 80422730 80424670 -137612488 - L1M3 LINE L1 -530 5653 3914 192 316 0 0 chr3 80425804 80425861 -137611297 - MIR3 SINE MIR -13 195 139 2024 92 0 0 chr3 80427580 80427831 -137609327 + AluSx SINE Alu 44 294 -18 581 257 110 28 chr3 80428211 80428429 -137608729 + MIR SINE MIR 6 241 -21 452 253 11 49 chr3 80428720 80428974 -137608184 + CT-rich Low_complexity Low_complexity 1 244 0 1550 163 72 7 chr3 80429269 80429546 -137607612 + AluJb SINE Alu 3 297 -15 22 0 0 0 chr3 80429688 80429710 -137607448 + AT_rich Low_complexity Low_complexity 1 22 0 456 19 0 0 chr3 80430065 80430118 -137607040 + (TG)n Simple_repeat Simple_repeat 2 54 0 6610 88 7 5 chr3 80430397 80431508 -137605650 + L1PA10 LINE L1 5059 6172 0 642 258 47 33 chr3 80431592 80431805 -137605353 - MER112 DNA MER1_type -40 220 5 2709 212 86 28 chr3 80432599 80433340 -137603818 - L1ME1 LINE L1 -5 6161 5378 252 354 71 22 chr3 80433619 80433845 -137603313 + L2 LINE L2 2329 2565 -749 198 0 0 0 chr3 80434049 80434071 -137603087 + (TG)n Simple_repeat Simple_repeat 1 22 0 970 298 156 35 chr3 80434856 80435323 -137601835 + L2 LINE L2 2178 2746 -568 1257 165 180 23 chr3 80435323 80435584 -137601574 + AluJb SINE Alu 1 302 0 970 298 156 35 chr3 80435584 80435764 -137601394 + L2 LINE L2 2746 2903 -411 189 94 0 0 chr3 80435778 80435810 -137601348 + (T)n Simple_repeat Simple_repeat 1 32 0 188 354 0 0 chr3 80435819 80435867 -137601291 + L2 LINE L2 2930 2977 -337 282 175 82 21 chr3 80435919 80436016 -137601142 - L1MA8 LINE L1 0 6312 6210 386 247 43 0 chr3 80436016 80436109 -137601049 - L2 LINE L2 -26 3246 3150 289 295 36 43 chr3 80436368 80436507 -137600651 - MIR SINE MIR -19 243 106 696 304 41 16 chr3 80436614 80436857 -137600301 - MIR SINE MIR 0 262 14 1794 150 10 29 chr3 80438075 80438381 -137598777 + THE1B LTR MaLR 65 364 0 608 158 147 90 chr3 80439875 80439996 -137597162 + L1MD3 LINE L1 7793 7929 -66 1811 153 3 7 chr3 80439996 80440283 -137596875 - AluJb SINE Alu -24 288 3 608 158 147 90 chr3 80440283 80440338 -137596820 + L1MD3 LINE L1 7929 7979 -16 1521 173 8 8 chr3 80440509 80440769 -137596389 + AluJo SINE Alu 23 282 -30 415 253 155 46 chr3 80441190 80441384 -137595774 + MIR SINE MIR 35 249 -13 239 263 105 0 chr3 80441933 80442009 -137595149 + MIR SINE MIR 39 122 -140 767 164 0 0 chr3 80442020 80442136 -137595022 - FLAM_C SINE Alu -16 127 12 240 308 42 42 chr3 80442136 80442256 -137594902 + MIR SINE MIR 122 241 -21 3997 232 53 37 chr3 80443698 80445042 -137592116 + L1ME1 LINE L1 4099 5483 -683 2124 99 6 35 chr3 80445042 80445356 -137591802 + AluSx SINE Alu 6 310 -2 3997 232 53 37 chr3 80445356 80445957 -137591201 + L1ME1 LINE L1 5483 6073 -93 219 309 127 36 chr3 80447827 80447992 -137589166 + MIR SINE MIR 23 202 -60 267 241 196 27 chr3 80450525 80450637 -137586521 - MIR SINE MIR -15 247 117 464 280 67 0 chr3 80450649 80450799 -137586359 + MIR SINE MIR 13 172 -90 214 308 132 11 chr3 80450792 80450883 -137586275 - MIR SINE MIR -130 132 31 * 315 157 0 0 chr3 80451025 80451095 -137586063 + (CAGA)n Simple_repeat Simple_repeat 2 71 0 1913 150 0 25 chr3 80452091 80452411 -137584747 + AluJo SINE Alu 1 312 0 181 280 129 11 chr3 80453158 80453251 -137583907 - MIR SINE MIR -122 140 37 230 313 148 9 chr3 80453340 80453455 -137583703 + L3 LINE CR1 394 524 -1053 1863 152 24 7 chr3 80455171 80455468 -137581690 + AluJo SINE Alu 1 302 -10 13257 139 65 16 chr3 80457510 80457958 -137579200 + Tigger1 DNA MER2_type 1 426 -1992 1830 153 21 0 chr3 80457958 80458245 -137578913 + AluJo SINE Alu 1 293 -19 13257 139 65 16 chr3 80458245 80460102 -137577056 + Tigger1 DNA MER2_type 426 2418 0 216 0 0 0 chr3 80467304 80467328 -137569830 + (CA)n Simple_repeat Simple_repeat 1 24 0 2158 122 10 0 chr3 80468812 80469107 -137568051 - AluSx SINE Alu -14 298 1 5063 233 120 24 chr3 80470062 80471171 -137565987 + L1MB7 LINE L1 14 1015 -5631 2419 79 0 32 chr3 80471171 80471487 -137565671 + AluY SINE Alu 1 306 -5 5063 233 120 24 chr3 80471487 80472850 -137564308 + L1MB7 LINE L1 1015 2762 -3884 969 224 66 7 chr3 80472851 80473154 -137564004 + L1MB7 LINE L1 2802 3122 -3522 1787 113 100 3 chr3 80473154 80473464 -137563694 - HSMAR2 DNA Mariner -1 1301 962 1895 192 62 42 chr3 80473465 80474042 -137563116 + L1MB7 LINE L1 4628 5216 -1428 3810 176 72 19 chr3 80474043 80475136 -137562022 + L1MB7 LINE L1 5511 6660 -22 3373 193 36 11 chr3 80475136 80475850 -137561308 - L1MB8 LINE L1 -1 6177 5446 368 277 50 0 chr3 80477761 80477862 -137559296 - MER5A DNA MER1_type -80 109 4 22 0 0 0 chr3 80478850 80478872 -137558286 + AT_rich Low_complexity Low_complexity 1 22 0 698 286 58 0 chr3 80481188 80481377 -137555781 + MER58A DNA MER1_type 2 201 -23 1974 148 17 0 chr3 80482842 80483139 -137554019 + AluJb SINE Alu 1 302 -10 185 296 113 26 chr3 80483424 80483539 -137553619 - L3 LINE CR1 -111 1466 1342 264 245 39 59 chr3 80483769 80483871 -137553287 - MER5A DNA MER1_type -2 187 88 209 244 0 0 chr3 80486283 80486328 -137550830 - L2 LINE L2 -5 3267 3223 268 214 112 0 chr3 80486741 80486830 -137550328 - MER5A DNA MER1_type -44 145 47 339 244 112 122 chr3 80487817 80487988 -137549170 + MIR SINE MIR 17 176 -56 207 268 0 18 chr3 80492560 80492616 -137544542 + MIR SINE MIR 21 75 -133 316 314 79 41 chr3 80493022 80493340 -137543818 - MLT1I LTR MaLR -8 401 72 640 208 11 78 chr3 80493352 80493621 -137543537 + LTR1 LTR ERV1 1 251 -534 737 168 30 15 chr3 80495124 80495255 -137541903 + AluJ SINE Alu 1 133 -169 424 276 12 59 chr3 80495333 80495503 -137541655 - MIR SINE MIR -94 168 7 287 328 0 0 chr3 80495518 80495585 -137541573 + MIR SINE MIR 31 97 -165 842 216 0 6 chr3 80499326 80499675 -137537483 + AluJ SINE Alu 136 483 0 210 191 48 0 chr3 80499675 80499717 -137537441 + G-rich Low_complexity Low_complexity 3 46 0 216 0 0 0 chr3 80503383 80503407 -137533751 + (A)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr3 80504238 80504260 -137532898 + AT_rich Low_complexity Low_complexity 1 22 0 2101 98 10 0 chr3 80506617 80506922 -137530236 + AluY SINE Alu 1 308 -3 256 224 26 13 chr3 80508221 80508297 -137528861 + L1ME2 LINE L1 6088 6164 0 2184 99 3 13 chr3 80510579 80510891 -137526267 - AluSc SINE Alu 0 309 1 393 185 43 11 chr3 80512414 80512506 -137524652 + L2 LINE L2 2620 2714 -600 4224 170 50 37 chr3 80512517 80513315 -137523843 + L1MB2 LINE L1 5207 5993 -178 2452 120 14 25 chr3 80513315 80513683 -137523475 - THE1B LTR MaLR 0 364 1 11728 75 27 22 chr3 80513683 80515255 -137521903 - THE1B-int LTR MaLR 0 1580 1 2256 127 14 32 chr3 80515255 80515626 -137521532 - THE1B LTR MaLR 0 364 1 4224 170 50 37 chr3 80515626 80515778 -137521380 + L1MB2 LINE L1 5992 6169 -2 2222 95 3 3 chr3 80515787 80516093 -137521065 + AluSp SINE Alu 1 306 -7 212 250 135 58 chr3 80516093 80516187 -137520971 + L2 LINE L2 2707 2811 -503 206 206 159 0 chr3 80516250 80516313 -137520845 + MIR SINE MIR 44 116 -146 480 236 25 68 chr3 80517169 80517206 -137519952 - MIR SINE MIR -83 179 142 2264 145 19 6 chr3 80517206 80517565 -137519593 + MER47A DNA MER2_type 2 365 -1 480 236 25 68 chr3 80517565 80517688 -137519470 - MIR SINE MIR -120 142 26 1262 183 14 5 chr3 80518662 80518881 -137518277 - MER58A DNA MER1_type 0 224 4 241 61 0 0 chr3 80519054 80519087 -137518071 - MER117 DNA MER1_type -39 158 126 708 160 8 16 chr3 80520016 80520141 -137517017 + FLAM_C SINE Alu 2 125 -18 1133 298 30 36 chr3 80520253 80520720 -137516438 - L1ME3A LINE L1 -123 6047 5584 2318 153 88 18 chr3 80521934 80522281 -137514877 + L1MC2 LINE L1 5860 6246 -98 210 37 0 0 chr3 80522281 80522308 -137514850 + (TG)n Simple_repeat Simple_repeat 1 27 0 2318 153 88 18 chr3 80522308 80522405 -137514753 + L1MC2 LINE L1 6246 6335 -9 180 0 0 0 chr3 80522406 80522426 -137514732 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 452 298 0 24 chr3 80522464 80522588 -137514570 + L2 LINE L2 3192 3312 -1 190 0 67 0 chr3 80522660 80522690 -137514468 + (CAA)n Simple_repeat Simple_repeat 2 33 0 840 264 45 16 chr3 80524964 80525210 -137511948 - MIR SINE MIR -8 254 2 182 288 175 25 chr3 80525708 80525788 -137511370 - MIR SINE MIR -147 115 24 4532 176 28 56 chr3 80526446 80526961 -137510197 + L1MD1 LINE L1 4999 5527 -715 2218 113 0 0 chr3 80526961 80527271 -137509887 + AluSx SINE Alu 1 310 -2 4532 176 28 56 chr3 80527271 80527773 -137509385 + L1MD1 LINE L1 5527 5983 -259 1806 139 0 63 chr3 80527773 80528090 -137509068 + AluSx SINE Alu 1 297 -15 4532 176 28 56 chr3 80528090 80528326 -137508832 + L1MD1 LINE L1 5983 6224 -18 313 266 64 9 chr3 80529395 80529504 -137507654 - MER103 DNA DNA -50 116 2 334 308 25 33 chr3 80530947 80531067 -137506091 - MIR SINE MIR -60 148 30 440 158 71 185 chr3 80532645 80532829 -137504329 - MER5B DNA MER1_type -15 163 1 564 290 149 0 chr3 80533208 80533422 -137503736 - MIR SINE MIR -8 254 9 445 332 20 20 chr3 80534340 80534542 -137502616 + MIR SINE MIR 61 262 0 294 29 0 0 chr3 80534944 80534979 -137502179 + (GGA)n Simple_repeat Simple_repeat 2 36 0 210 233 0 17 chr3 80535814 80535874 -137501284 + G-rich Low_complexity Low_complexity 2 60 0 323 294 92 68 chr3 80536046 80536209 -137500949 + L2 LINE L2 3014 3180 -92 621 214 49 55 chr3 80537061 80537238 -137499920 + MER5A DNA MER1_type 2 168 -10 365 219 94 109 chr3 80537306 80537498 -137499660 + L1MC4 LINE L1 6534 6722 -1320 2041 119 3 0 chr3 80538907 80539209 -137497949 - AluSq SINE Alu -10 303 1 520 180 24 108 chr3 80539377 80539564 -137497594 + L1MB7 LINE L1 5966 6148 -30 1835 80 47 18 chr3 80539587 80539861 -137497297 - L1MA2 LINE L1 -6 6298 6017 330 317 10 0 chr3 80542392 80542493 -137494665 - MER5A DNA MER1_type -79 110 9 205 227 0 0 chr3 80542857 80542901 -137494257 + MIR SINE MIR 102 145 -63 194 250 73 15 chr3 80542910 80542978 -137494180 - MIR SINE MIR -120 142 71 645 248 108 5 chr3 80545800 80546014 -137491144 - MIR SINE MIR -15 247 12 182 307 51 58 chr3 80546060 80546197 -137490961 - MIR SINE MIR -74 188 53 2211 97 0 10 chr3 80547451 80547741 -137489417 - AluSx SINE Alu -22 290 4 266 261 10 68 chr3 80548000 80548138 -137489020 - L1ME LINE L1 -297 5824 5696 377 264 31 16 chr3 80548401 80548530 -137488628 - MIR SINE MIR -19 243 113 342 367 25 29 chr3 80548548 80548793 -137488365 + MIR SINE MIR 7 250 -12 1950 147 34 0 chr3 80548800 80549092 -137488066 + AluJo SINE Alu 1 302 -10 264 374 7 19 chr3 80550129 80550284 -137486874 - MIR SINE MIR -108 154 2 271 284 114 0 chr3 80550522 80550610 -137486548 + MIR SINE MIR 49 146 -116 1262 183 58 0 chr3 80550616 80550857 -137486301 - AluJb SINE Alu -6 306 52 2017 149 3 0 chr3 80550921 80551223 -137485935 + AluSx SINE Alu 1 303 -9 2107 135 10 0 chr3 80551235 80551531 -137485627 + AluSq SINE Alu 1 299 -14 184 291 86 17 chr3 80552097 80552214 -137484944 + L2 LINE L2 3104 3228 -85 1807 186 8 26 chr3 80552237 80552619 -137484539 - MER96B DNA MER1_type? -41 376 2 303 225 11 56 chr3 80552624 80552713 -137484445 + L2 LINE L2 3227 3311 -2 1745 161 111 17 chr3 80552894 80553247 -137483911 + MLT1B LTR MaLR 5 390 0 1862 154 22 0 chr3 80553531 80553834 -137483324 + AluSx SINE Alu 3 311 0 266 191 180 11 chr3 80554107 80554196 -137482962 + L1ME4a LINE L1 5995 6098 -23 969 107 8 0 chr3 80554484 80554615 -137482543 + AluSx SINE Alu 22 153 -159 1294 135 4 52 chr3 80555450 80555680 -137481478 + MER20 DNA MER1_type 1 219 0 2376 94 3 7 chr3 80557858 80558166 -137478992 - AluSx SINE Alu -5 307 1 2854 116 14 38 chr3 80558175 80558541 -137478617 - L1MB3 LINE L1 0 6183 5831 1859 146 0 36 chr3 80558541 80558842 -137478316 - AluJo SINE Alu -21 291 2 2854 116 14 38 chr3 80558842 80558976 -137478182 - L1MB3 LINE L1 -352 5831 5695 818 193 32 73 chr3 80559756 80559858 -137477300 - MER3 DNA MER1_type 0 209 119 2445 66 3 7 chr3 80559858 80560161 -137476997 - AluY SINE Alu -9 302 1 818 193 32 73 chr3 80560161 80560276 -137476882 - MER3 DNA MER1_type -90 119 1 802 162 0 22 chr3 80562287 80562423 -137474735 + FLAM_C SINE Alu 1 133 0 2551 77 0 0 chr3 80564522 80564833 -137472325 + AluY SINE Alu 1 311 0 2280 116 0 0 chr3 80566844 80567145 -137470013 - AluSq SINE Alu -12 301 1 4580 176 26 19 chr3 80572079 80572978 -137464180 + L1MB7 LINE L1 5280 6184 0 237 178 0 0 chr3 80574020 80574065 -137463093 + (CA)n Simple_repeat Simple_repeat 2 46 0 329 289 178 52 chr3 80574881 80575341 -137461817 + L1ME4a LINE L1 5350 5867 -254 329 384 68 20 chr3 80576792 80577086 -137460072 - L2 LINE L2 -26 3246 2939 1918 160 10 13 chr3 80577372 80577678 -137459480 + AluJb SINE Alu 1 305 -7 394 268 134 17 chr3 80578681 80578860 -137458298 - MIR SINE MIR -1 261 62 201 74 0 0 chr3 80580084 80580111 -137457047 + (CA)n Simple_repeat Simple_repeat 2 28 0 180 77 0 0 chr3 80580496 80580522 -137456636 + (TAAAAA)n Simple_repeat Simple_repeat 3 28 0 1973 123 0 45 chr3 80580839 80581147 -137456011 + AluSx SINE Alu 1 294 -18 1856 164 7 0 chr3 80581739 80582014 -137455144 + AluJb SINE Alu 1 277 -35 294 29 0 0 chr3 80582015 80582050 -137455108 + (TG)n Simple_repeat Simple_repeat 2 36 0 406 186 228 7 chr3 80582160 80582305 -137454853 - MIR3 SINE MIR -5 203 27 286 135 0 0 chr3 80584129 80584181 -137452977 + L1MB7 LINE L1 6133 6184 0 367 232 76 91 chr3 80584189 80584387 -137452771 + L1MC5 LINE L1 7731 7925 -36 2280 163 132 2 chr3 80784957 80785459 -137251699 - L1MD3 LINE L1 -19 7976 7410 244 222 0 56 chr3 80785460 80785532 -137251626 - MLT1E LTR MaLR -457 136 69 435 261 35 0 chr3 80785592 80785707 -137251451 + MIR SINE MIR 124 242 -20 523 348 127 41 chr3 80785721 80786429 -137250729 - L2 LINE L2 -2 3311 2550 456 190 0 0 chr3 80786764 80786843 -137250315 - MIR SINE MIR -97 165 87 5650 127 24 18 chr3 80787651 80788341 -137248817 - L1MA5 LINE L1 0 6300 5598 1542 221 35 0 chr3 80788341 80788631 -137248527 - AluJo SINE Alu -12 300 1 5650 127 24 18 chr3 80788631 80789087 -137248071 - L1MA5 LINE L1 -702 5598 5146 1888 147 38 0 chr3 80789088 80789429 -137247729 - L1MA5 LINE L1 -1222 4924 4571 224 328 64 48 chr3 80791090 80791215 -137245943 + MIR SINE MIR 62 188 -74 603 306 52 32 chr3 80791419 80791762 -137245396 + MLT1K LTR MaLR 223 572 -16 2035 164 3 52 chr3 80792788 80793172 -137243986 - MLT1A1 LTR MaLR 0 365 1 300 211 12 143 chr3 80793480 80793641 -137243517 - LTR41 LTR ERVL -6 767 628 1618 163 21 0 chr3 80793688 80793977 -137243181 + LTR31 LTR ERV1 3 297 -322 307 221 0 13 chr3 80793973 80794050 -137243108 - LTR41 LTR ERVL -149 624 549 * 426 237 123 18 chr3 80795733 80795847 -137241311 - MIR SINE MIR -67 141 16 3876 218 75 9 chr3 80798861 80800255 -137236903 - L1MD2 LINE L1 -13 6346 4879 762 168 0 0 chr3 80800273 80800392 -137236766 - FLAM_C SINE Alu -13 130 12 522 301 46 32 chr3 80800474 80800690 -137236468 - MIR SINE MIR -18 244 26 180 313 149 0 chr3 80801396 80801463 -137235695 + MIR SINE MIR 21 97 -165 364 233 35 0 chr3 80801710 80801796 -137235362 + L2 LINE L2 3186 3274 -39 2487 29 16 10 chr3 80802036 80802345 -137234813 + AluY SINE Alu 1 311 0 358 268 89 25 chr3 80802660 80802817 -137234341 + MIR SINE MIR 96 262 0 1397 170 44 47 chr3 80804284 80804625 -137232533 + LTR32 LTR ERVL 13 352 -119 834 163 0 7 chr3 80804683 80804836 -137232322 + LTR32 LTR ERVL 320 471 0 413 345 78 14 chr3 80804864 80805209 -137231949 - MLT1K LTR MaLR -33 555 189 282 299 131 0 chr3 80805887 80805994 -137231164 + MIR SINE MIR 51 171 -91 237 159 0 0 chr3 80807280 80807324 -137229834 + GA-rich Low_complexity Low_complexity 4 47 0 459 256 159 17 chr3 80807330 80807612 -137229546 - L2 LINE L2 -278 3035 2706 238 349 8 31 chr3 80807602 80807731 -137229427 - MIR SINE MIR -123 139 14 * 502 232 99 0 chr3 80808142 80808284 -137228874 + Charlie8 DNA MER1_type 110 265 -2152 740 239 70 33 chr3 80808359 80808493 -137228665 + MIR SINE MIR 1 149 -113 2677 99 3 3 chr3 80808493 80808857 -137228301 + THE1B LTR MaLR 1 364 0 740 239 70 33 chr3 80808857 80808965 -137228193 + MIR SINE MIR 149 252 -10 743 130 0 7 chr3 80809788 80809926 -137227232 + (TCTA)n Simple_repeat Simple_repeat 4 140 0 314 245 71 10 chr3 80812291 80812389 -137224769 - MER5A DNA MER1_type -76 113 10 9202 22 0 0 chr3 80812611 80813739 -137223419 - L1PA4 LINE L1 -1439 4707 3580 7233 37 8 1 chr3 80813740 80815144 -137222014 + L1PA4 LINE L1 4733 6142 -13 297 0 0 0 chr3 80815588 80815621 -137221537 + (TA)n Simple_repeat Simple_repeat 2 34 0 2773 126 11 4 chr3 80815640 80816094 -137221064 - L1PA16 LINE L1 -104 6062 5606 327 186 0 0 chr3 80816371 80816430 -137220728 - FLAM_A SINE Alu -11 122 64 465 19 0 0 chr3 80816698 80816752 -137220406 + (CA)n Simple_repeat Simple_repeat 1 54 0 315 304 33 61 chr3 80816816 80816997 -137220161 - MIR3 SINE MIR -27 181 6 316 246 93 38 chr3 80817180 80817280 -137219878 - MER113 DNA MER1_type? -322 199 106 1752 137 86 4 chr3 80817280 80817558 -137219600 + AluSq SINE Alu 1 301 -12 316 246 93 38 chr3 80817558 80817640 -137219518 - MER113 DNA MER1_type? -415 106 7 22 94 0 0 chr3 80817987 80818051 -137219107 + AT_rich Low_complexity Low_complexity 1 64 0 504 110 44 0 chr3 80820463 80820554 -137216604 + L1MA7 LINE L1 6187 6281 -10 190 325 61 49 chr3 80820592 80820755 -137216403 - MIR SINE MIR -44 218 54 219 188 0 0 chr3 80822281 80822329 -137214829 + CT-rich Low_complexity Low_complexity 4 51 0 269 200 18 0 chr3 80822329 80822384 -137214774 - MER5A DNA MER1_type -122 67 12 642 249 79 12 chr3 80822408 80822466 -137214692 - MER5A DNA MER1_type -7 182 129 1450 194 13 58 chr3 80822466 80822775 -137214383 + AluJo SINE Alu 1 295 -17 642 249 79 12 chr3 80822775 80822881 -137214277 - MER5A DNA MER1_type -60 129 7 644 217 0 0 chr3 80822934 80823049 -137214109 + FLAM_C SINE Alu 1 115 -18 908 283 78 65 chr3 80824256 80824822 -137212336 - MLT1K LTR MaLR -4 584 12 215 154 0 19 chr3 80825078 80825130 -137212028 + CT-rich Low_complexity Low_complexity 2 52 0 234 0 0 0 chr3 80825130 80825156 -137212002 + (CA)n Simple_repeat Simple_repeat 1 26 0 229 350 86 26 chr3 80825538 80825772 -137211386 + MIR SINE MIR 8 255 -7 224 230 108 14 chr3 80825918 80825992 -137211166 + MIR3 SINE MIR 85 165 -43 465 311 99 19 chr3 80826467 80826680 -137210478 - L2 LINE L2 -268 3004 2779 200 312 69 48 chr3 80826726 80826915 -137210243 - MIR SINE MIR -61 201 9 341 323 83 8 chr3 80826935 80827068 -137210090 - L2 LINE L2 -604 2710 2568 258 301 32 21 chr3 80827102 80827195 -137209963 + MIR3 SINE MIR 78 171 -37 25 0 0 0 chr3 80828335 80828360 -137208798 + AT_rich Low_complexity Low_complexity 1 25 0 223 337 55 25 chr3 80828402 80828604 -137208554 - L2 LINE L2 -10 3303 3096 265 349 88 26 chr3 80828649 80828841 -137208317 - L2 LINE L2 -371 2943 2740 502 293 61 38 chr3 80828898 80829110 -137208048 - L2 LINE L2 -224 3089 2873 342 346 24 0 chr3 80829208 80829335 -137207823 + L2 LINE L2 3179 3308 -5 709 212 85 0 chr3 80829547 80829712 -137207446 - MER20 DNA MER1_type -4 215 37 22 70 0 0 chr3 80830197 80830240 -137206918 + AT_rich Low_complexity Low_complexity 1 43 0 286 241 63 25 chr3 80830350 80830429 -137206729 - L2 LINE L2 -34 3279 3198 611 291 35 4 chr3 80831258 80831512 -137205646 - L1ME LINE L1 -378 5743 5482 325 193 9 46 chr3 80831595 80831704 -137205454 - L1MC5 LINE L1 -49 7912 7808 792 224 0 38 chr3 80832001 80832184 -137204974 - MER5A DNA MER1_type -3 186 11 346 268 216 0 chr3 80832201 80832354 -137204804 - MER5A DNA MER1_type 0 189 4 292 300 59 41 chr3 80834142 80834312 -137202846 + MIR SINE MIR 49 221 -41 199 333 9 56 chr3 80834424 80834532 -137202626 - MIR SINE MIR -56 206 104 2039 124 45 3 chr3 80834763 80835053 -137202105 - AluSx SINE Alu -10 302 1 2808 90 0 11 chr3 80835183 80835562 -137201596 - THE1C LTR MaLR 0 375 1 229 385 22 0 chr3 80835605 80835696 -137201462 - MIR SINE MIR -9 253 161 381 275 105 55 chr3 80836809 80837009 -137200149 + MIR SINE MIR 47 256 -6 1234 250 92 5 chr3 80837571 80837939 -137199219 + L1ME3 LINE L1 5424 5823 -341 734 193 7 7 chr3 80837940 80838075 -137199083 + AluJb SINE Alu 1 135 -177 1178 211 10 61 chr3 80838107 80838401 -137198757 + AluJo SINE Alu 23 301 -11 1179 196 44 40 chr3 80838407 80838728 -137198430 + L1ME3 LINE L1 5833 6154 -8 271 231 0 13 chr3 80838740 80838818 -137198340 + (TA)n Simple_repeat Simple_repeat 1 77 0 309 219 42 59 chr3 80838902 80839021 -137198137 + L1MC5 LINE L1 7452 7568 -393 2277 95 0 0 chr3 80839225 80839509 -137197649 + AluSc SINE Alu 1 284 -25 50 31 0 0 chr3 80839509 80839573 -137197585 + AT_rich Low_complexity Low_complexity 1 64 0 240 159 68 0 chr3 80839924 80839968 -137197190 - L2 LINE L2 -5 3267 3221 329 203 143 0 chr3 80842323 80842408 -137194750 - L1ME3A LINE L1 -28 6134 6040 354 300 46 33 chr3 80842414 80842721 -137194437 - L1M4 LINE L1 -801 5345 5035 694 318 135 21 chr3 80842764 80843195 -137193963 - L2 LINE L2 -532 2782 2303 361 222 98 39 chr3 80843374 80843527 -137193631 - MER103 DNA DNA -2 164 3 210 250 19 0 chr3 80844408 80844460 -137192698 + MIR SINE MIR 204 256 -6 457 307 127 5 chr3 80844715 80844920 -137192238 - MIR SINE MIR -30 232 3 650 144 18 0 chr3 80845672 80845783 -137191375 + AluJb SINE Alu 195 307 -5 1734 157 33 23 chr3 80845870 80846042 -137191116 - AluJo SINE Alu -10 302 124 198 0 0 0 chr3 80846042 80846064 -137191094 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1734 157 33 23 chr3 80846064 80846190 -137190968 - AluJo SINE Alu -188 124 1 207 0 0 0 chr3 80846224 80846247 -137190911 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 806 71 26 0 chr3 80846641 80846754 -137190404 + L1PA8 LINE L1 6057 6172 0 370 307 158 40 chr3 80846804 80847032 -137190126 + MIR SINE MIR 8 262 0 1038 211 30 4 chr3 80847566 80847836 -137189322 - Charlie5 DNA MER1_type 0 2624 2348 661 209 65 65 chr3 80847827 80847951 -137189207 - Charlie5 DNA MER1_type -2421 203 77 * 1882 144 27 7 chr3 80847951 80848243 -137188915 + AluJb SINE Alu 1 298 -14 661 209 65 65 chr3 80848243 80848319 -137188839 - Charlie5 DNA MER1_type -2546 78 3 228 367 55 9 chr3 80848326 80848435 -137188723 + MIR SINE MIR 18 131 -77 1732 178 0 10 chr3 80848964 80849257 -137187901 - AluJo SINE Alu -9 303 14 610 330 55 78 chr3 80850077 80850588 -137186570 - L2 LINE L2 -16 3256 2758 338 336 0 9 chr3 80850824 80850934 -137186224 - MER5B DNA MER1_type -69 109 1 1957 141 38 30 chr3 80851872 80852242 -137184916 + THE1C LTR MaLR 3 375 0 8575 121 12 112 chr3 80852242 80853934 -137183224 + THE1C-int LTR MaLR 1 1523 -57 634 75 11 0 chr3 80854034 80854128 -137183030 + THE1C-int LTR MaLR 1486 1580 0 2134 138 36 16 chr3 80854133 80854496 -137182662 + THE1C LTR MaLR 6 375 0 256 196 0 0 chr3 80854497 80854543 -137182615 - L1MD2 LINE L1 -226 6133 6088 269 288 167 28 chr3 80854571 80854894 -137182264 - L1MC4a LINE L1 -1654 6154 5787 340 317 67 0 chr3 80856082 80856186 -137180972 + L2 LINE L2 3200 3310 -3 267 353 45 3 chr3 80856225 80856349 -137180809 + MIR SINE MIR 31 154 -62 * 821 232 75 50 chr3 80856345 80856586 -137180572 + MIR SINE MIR 5 251 -11 2262 84 0 29 chr3 80856936 80857244 -137179914 - AluY SINE Alu -12 299 1 1039 278 110 6 chr3 80858484 80858847 -137178311 - MLT1C LTR MaLR 0 467 67 348 161 0 0 chr3 80858859 80858940 -137178218 + (TA)n Simple_repeat Simple_repeat 2 82 0 340 138 35 0 chr3 80858940 80858998 -137178160 - MLT1C LTR MaLR -405 62 3 602 287 108 0 chr3 80859246 80859441 -137177717 + MIR SINE MIR 13 228 -34 255 293 189 59 chr3 80860439 80860661 -137176497 + MIR SINE MIR 12 262 0 201 143 0 0 chr3 80862273 80862308 -137174850 + (CA)n Simple_repeat Simple_repeat 1 35 0 307 375 145 0 chr3 80862371 80862611 -137174547 + L2 LINE L2 2791 3056 -257 332 330 25 34 chr3 80862636 80862754 -137174404 + L2 LINE L2 3197 3313 0 337 296 44 64 chr3 80863127 80863330 -137173828 - MLT1K LTR MaLR 0 588 390 2218 110 21 46 chr3 80864393 80864766 -137172392 - THE1B LTR MaLR 0 364 1 11078 103 19 1 chr3 80864766 80866316 -137170842 - THE1B-int LTR MaLR 0 1580 2 2004 146 25 30 chr3 80866317 80866681 -137170477 - THE1B LTR MaLR 0 364 3 33 25 0 0 chr3 80868399 80868439 -137168719 + AT_rich Low_complexity Low_complexity 1 40 0 256 279 70 23 chr3 80870150 80870236 -137166922 - L2 LINE L2 -12 3260 3171 * 289 186 34 0 chr3 80870213 80870272 -137166886 + L2 LINE L2 3249 3309 -4 790 291 59 33 chr3 80870773 80871044 -137166114 - MLT1I LTR MaLR -24 385 108 243 400 0 0 chr3 80871052 80871157 -137166001 + L2 LINE L2 3197 3301 -12 720 248 16 87 chr3 80871158 80871412 -137165746 - MER45C DNA AcHobo 0 953 718 242 281 18 0 chr3 80871491 80871548 -137165610 - MER45C DNA AcHobo -478 475 418 244 353 85 7 chr3 80871916 80872069 -137165089 - MIR3 SINE MIR -5 203 39 776 135 57 163 chr3 80872796 80873041 -137164117 + MER20 DNA MER1_type 1 219 0 513 257 172 60 chr3 80873811 80874212 -137162946 + LTR33A LTR ERVL 9 454 -69 600 313 43 13 chr3 80874518 80874751 -137162407 + MIR SINE MIR 23 262 0 265 171 286 29 chr3 80874768 80874873 -137162285 + MIR SINE MIR 129 260 -2 192 330 110 0 chr3 80875916 80876007 -137161151 - MIR SINE MIR -71 191 91 532 152 0 0 chr3 80876042 80876121 -137161037 + AluJ/FLAM SINE Alu 1 79 -233 2164 108 21 0 chr3 80876159 80876447 -137160711 + AluSx SINE Alu 1 294 -18 226 278 19 0 chr3 80877269 80877323 -137159835 + MER69 DNA AcHobo 5 59 -2467 542 247 91 11 chr3 80877884 80878070 -137159088 - MER90 LTR ERV1 -16 598 398 263 103 0 0 chr3 80878078 80878117 -137159041 + MADE1 DNA Mariner 1 39 -41 253 49 122 0 chr3 80878185 80878226 -137158932 - MADE1 DNA Mariner -32 48 3 955 233 70 55 chr3 80878226 80878570 -137158588 - MER90 LTR ERV1 -225 350 2 261 342 12 10 chr3 80878626 80878734 -137158424 + MIR SINE MIR 46 155 -53 688 306 77 4 chr3 80878748 80878983 -137158175 + MIR SINE MIR 4 255 -7 414 321 62 17 chr3 80879375 80879570 -137157588 - MIR3 SINE MIR -32 176 23 2468 111 14 0 chr3 80880540 80880899 -137156259 + THE1B LTR MaLR 1 364 0 749 301 42 8 chr3 80881062 80881298 -137155860 + MIR SINE MIR 5 248 -14 30 59 0 0 chr3 80882338 80882389 -137154769 + AT_rich Low_complexity Low_complexity 1 51 0 1619 106 127 67 chr3 80882702 80882985 -137154173 - AluSg SINE Alu -10 300 1 24 32 0 0 chr3 80883466 80883497 -137153661 + AT_rich Low_complexity Low_complexity 1 31 0 557 335 56 54 chr3 80883519 80884002 -137153156 - MLT1K LTR MaLR 0 588 105 627 264 25 19 chr3 80884161 80884320 -137152838 - MIR SINE MIR -52 210 51 2477 180 22 12 chr3 80884558 80885059 -137152099 + L1MB5 LINE L1 5646 6151 -23 197 227 0 0 chr3 80885065 80885109 -137152049 + L2 LINE L2 3270 3313 0 2629 165 67 53 chr3 80885242 80885471 -137151687 + L1MA9 LINE L1 4647 4871 -1441 2594 51 0 0 chr3 80885471 80885782 -137151376 - AluY SINE Alu 0 311 1 2629 165 67 53 chr3 80885782 80886494 -137150664 + L1MA9 LINE L1 4871 5611 -701 * 4524 139 50 3 chr3 80886481 80887248 -137149910 + L1PA15 LINE L1 5350 6152 -13 3019 171 71 3 chr3 80887253 80887855 -137149303 + L1MA9 LINE L1 5601 6243 -69 180 0 0 0 chr3 80887974 80887994 -137149164 + (TTG)n Simple_repeat Simple_repeat 2 21 0 414 277 57 39 chr3 80888761 80889030 -137148128 - MLT1H LTR MaLR -123 286 51 730 89 0 10 chr3 80889391 80889492 -137147666 + MLT1B LTR MaLR 291 390 0 407 292 78 7 chr3 80889493 80889647 -137147511 + MIR SINE MIR 78 242 -20 694 246 52 14 chr3 80890248 80890459 -137146699 + MER20 DNA MER1_type 1 219 0 186 150 0 0 chr3 80891141 80891181 -137145977 + (CAAT)n Simple_repeat Simple_repeat 1 40 0 335 300 9 27 chr3 80891541 80891651 -137145507 - MLT1K LTR MaLR -309 279 172 438 252 104 9 chr3 80892690 80892805 -137144353 + L2 LINE L2 3188 3313 0 11322 207 27 22 chr3 80892842 80896459 -137140699 - L1MC1 LINE L1 -377 6236 2507 2308 155 19 63 chr3 80896459 80896937 -137140221 - MSTB2 LTR MaLR 0 457 1 11322 207 27 22 chr3 80896937 80898137 -137139021 - L1MC1 LINE L1 -4106 2507 1314 4139 177 46 51 chr3 80898134 80899040 -137138118 - L1MC1 LINE L1 -5502 924 23 * 387 332 37 84 chr3 80899040 80899395 -137137763 - MLT1K LTR MaLR -161 427 90 345 311 60 40 chr3 80899512 80899663 -137137495 - MIR3 SINE MIR -54 154 1 212 288 30 0 chr3 80900208 80900274 -137136884 + MIR SINE MIR 81 148 -114 956 328 73 23 chr3 80901240 80901762 -137135396 - MLT1K LTR MaLR -2 586 39 511 254 9 0 chr3 80902282 80902392 -137134766 + MER5A DNA MER1_type 77 187 -2 444 288 159 0 chr3 80902495 80902658 -137134500 - MIR SINE MIR 0 262 74 1426 269 103 36 chr3 80903561 80904116 -137133042 + MLT1E LTR MaLR 2 593 0 211 184 0 0 chr3 80905435 80905473 -137131685 + (CTG)n Simple_repeat Simple_repeat 2 39 0 2129 227 52 21 chr3 80905521 80906037 -137131121 - MLT1F LTR MaLR 0 542 11 567 302 128 42 chr3 80906211 80906332 -137130826 - L2 LINE L2 -15 3298 3189 2314 166 34 5 chr3 80906332 80906749 -137130409 - MSTB1 LTR MaLR 0 432 4 567 302 128 42 chr3 80906749 80907205 -137129953 - L2 LINE L2 -124 3189 2667 184 322 107 33 chr3 80907626 80907747 -137129411 - L3b LINE CR1 -41 1542 1413 254 200 0 33 chr3 80907911 80907971 -137129187 - LTR67 LTR ERVL -16 541 484 449 329 107 21 chr3 80909269 80909503 -137127655 + MIR SINE MIR 8 261 -1 209 284 198 52 chr3 80910030 80910146 -137127012 + MIR SINE MIR 8 140 -122 785 233 5 29 chr3 80910180 80910386 -137126772 + L1MC3 LINE L1 5054 5254 -892 4742 186 18 3 chr3 80910392 80911307 -137125851 + L1MC3 LINE L1 5456 6383 -1402 4183 154 55 111 chr3 80911352 80911916 -137125242 + L1MC3 LINE L1 6694 7261 -524 356 54 0 250 chr3 80911916 80912008 -137125150 + MADE1 DNA Mariner 12 80 0 4183 154 55 111 chr3 80912008 80912488 -137124670 + L1MC3 LINE L1 7261 7766 -19 226 286 26 0 chr3 80912533 80912610 -137124548 - MIR SINE MIR -46 216 138 244 390 8 8 chr3 80913363 80913486 -137123672 + L3 LINE CR1 1245 1367 -210 574 216 156 25 chr3 80914290 80914617 -137122541 - MLT1E1 LTR MaLR -230 424 7 1803 135 62 21 chr3 80917431 80917742 -137119416 - AluSx SINE Alu 0 312 1 372 192 42 33 chr3 80917815 80917935 -137119223 - MARNA DNA Mariner -234 352 232 194 361 0 0 chr3 80918090 80918151 -137119007 - MIR SINE MIR -19 243 183 222 174 0 0 chr3 80918232 80918278 -137118880 + (TATG)n Simple_repeat Simple_repeat 3 48 0 326 303 11 0 chr3 80919439 80919528 -137117630 + MIR3 SINE MIR 95 184 -24 2371 90 3 3 chr3 80919660 80919970 -137117188 - AluSg SINE Alu 0 310 1 227 328 0 0 chr3 80920332 80920393 -137116765 - L2 LINE L2 -12 3301 3241 * 405 318 11 2 chr3 80920389 80920513 -137116645 + MIR SINE MIR 17 140 -68 357 252 20 66 chr3 80920531 80920682 -137116476 + MIR SINE MIR 73 216 -46 238 294 71 54 chr3 80921385 80921569 -137115589 - MIR SINE MIR -16 246 60 504 239 15 8 chr3 80922850 80922980 -137114178 + MIR SINE MIR 123 253 -9 885 196 18 0 chr3 80923015 80923178 -137113980 - FAM SINE Alu -9 166 1 232 358 93 31 chr3 80923316 80923478 -137113680 + L2 LINE L2 3096 3267 -5 495 306 111 10 chr3 80924517 80924716 -137112442 + MIR SINE MIR 31 249 -13 5997 133 12 9 chr3 80924736 80925725 -137111433 - L1MA4 LINE L1 0 6300 5309 2644 32 10 0 chr3 80926107 80926418 -137110740 - AluYb8 SINE Alu -4 314 1 711 252 40 18 chr3 80926429 80926655 -137110503 - L1MB8 LINE L1 0 6178 5948 269 261 80 0 chr3 80926801 80926889 -137110269 - MER5A DNA MER1_type -85 104 10 483 326 53 30 chr3 80926944 80927248 -137109910 - MLT1I LTR MaLR -79 330 20 205 341 45 0 chr3 80927422 80927510 -137109648 - MIR3 SINE MIR -6 202 111 566 305 39 26 chr3 80928208 80928471 -137108687 + MIR SINE MIR 2 262 0 256 180 0 0 chr3 80928650 80928700 -137108458 - Charlie8 DNA MER1_type -2265 152 103 316 224 47 12 chr3 80928862 80928947 -137108211 + MER5A DNA MER1_type 93 180 -9 2039 129 7 0 chr3 80928950 80929244 -137107914 - AluSx SINE Alu -16 296 1 1788 120 128 58 chr3 80929311 80929711 -137107447 - MSTA LTR MaLR 0 428 1 861 133 38 100 chr3 80929733 80929943 -137107215 - L1MA10 LINE L1 -29 6305 6109 325 233 73 107 chr3 80930702 80930852 -137106306 - MIR SINE MIR -12 250 106 327 312 20 14 chr3 80931149 80931326 -137105832 - MLT1H LTR MaLR -144 265 86 321 280 102 34 chr3 80932007 80932125 -137105033 + MER63 DNA MER1_type 1 752 -310 180 262 0 0 chr3 80933161 80933203 -137103955 - L2 LINE L2 -208 3064 3023 2915 169 16 88 chr3 80933271 80934013 -137103145 - LTR8 LTR ERV1 -2 689 1 375 238 74 74 chr3 80935441 80935630 -137101528 + MER5A DNA MER1_type 1 189 0 1137 268 57 52 chr3 80935746 80936077 -137101081 + MER119 DNA MER1_type 5 342 -241 2127 98 4 0 chr3 80936077 80936353 -137100805 - AluSp SINE Alu -25 288 12 1137 268 57 52 chr3 80936353 80936596 -137100562 + MER119 DNA MER1_type 342 582 -1 297 299 92 0 chr3 80936812 80936899 -137100259 + MIR SINE MIR 30 124 -84 181 255 64 0 chr3 80936951 80936998 -137100160 - L2 LINE L2 -13 3259 3210 * 339 208 67 67 chr3 80936975 80937095 -137100063 - MIR SINE MIR -34 228 109 269 200 0 0 chr3 80937220 80937270 -137099888 + Alu SINE Alu 249 298 -4 22 0 0 0 chr3 80937913 80937935 -137099223 + AT_rich Low_complexity Low_complexity 1 22 0 1833 160 3 7 chr3 80938372 80938660 -137098498 - AluJb SINE Alu -5 307 21 786 277 0 5 chr3 80939723 80939907 -137097251 - MER58A DNA MER1_type -23 201 19 183 242 187 55 chr3 80940203 80940294 -137096864 + MIR SINE MIR 38 140 -68 472 288 134 6 chr3 80940340 80940512 -137096646 + MIR SINE MIR 41 237 -25 880 261 5 9 chr3 80941809 80942027 -137095131 - MER58A DNA MER1_type -7 217 1 253 280 84 0 chr3 80942070 80942177 -137094981 + Charlie8 DNA MER1_type 160 275 -2142 283 263 88 119 chr3 80942619 80942813 -137094345 + MER5A DNA MER1_type 1 188 -1 272 290 87 36 chr3 80942981 80943119 -137094039 + MIR3 SINE MIR 39 183 -25 783 237 12 17 chr3 80943245 80943418 -137093740 + MER5B DNA MER1_type 2 173 -5 2712 144 30 12 chr3 80943658 80944159 -137092999 - MER34B LTR ERV1 -20 545 36 498 237 71 6 chr3 80944238 80944407 -137092751 - MLT2E LTR ERVL -33 595 416 1105 223 63 55 chr3 80944412 80944914 -137092244 - MER34B LTR ERV1 -5 560 6 503 253 90 39 chr3 80945002 80945180 -137091978 - MLT2E LTR ERVL -332 296 110 272 359 39 0 chr3 80946119 80946222 -137090936 + MIR3 SINE MIR 54 160 -48 279 274 21 0 chr3 80946337 80946432 -137090726 - L1MD3 LINE L1 -170 7825 7729 360 222 14 156 chr3 80946454 80946666 -137090492 + Charlie8 DNA MER1_type 92 273 -2144 1275 207 31 96 chr3 80946825 80947211 -137089947 - MLT1A1 LTR MaLR 0 365 5 825 324 8 4 chr3 80947525 80947769 -137089389 + MIR SINE MIR 18 262 0 601 338 19 0 chr3 80947900 80948107 -137089051 + L3 LINE CR1 1285 1495 -82 250 162 88 0 chr3 80948116 80948184 -137088974 - MER3 DNA MER1_type -16 193 120 671 196 0 39 chr3 80948207 80948360 -137088798 - MER3 DNA MER1_type -59 150 4 220 302 104 0 chr3 80948481 80948577 -137088581 + MIR SINE MIR 82 187 -75 301 340 119 6 chr3 80948750 80948909 -137088249 - MIR SINE MIR -5 257 81 252 86 0 0 chr3 80948996 80949031 -137088127 + (CATA)n Simple_repeat Simple_repeat 1 35 0 199 329 269 6 chr3 80949031 80949198 -137087960 - MIR SINE MIR -44 218 8 464 249 98 46 chr3 80950559 80950732 -137086426 - MIR SINE MIR -15 247 66 1797 215 57 39 chr3 80951508 80952000 -137085158 + MLT1D LTR MaLR 1 501 -4 2435 153 45 11 chr3 80953395 80953867 -137083291 + L1MA4A LINE L1 5812 6299 -4 363 301 63 21 chr3 80953957 80954159 -137082999 - MIR SINE MIR -6 256 46 209 375 48 10 chr3 80954592 80954696 -137082462 - L2 LINE L2 -239 3033 2926 207 0 0 0 chr3 80955215 80955238 -137081920 + (T)n Simple_repeat Simple_repeat 1 23 0 200 143 114 0 chr3 80955417 80955452 -137081706 + L2 LINE L2 3265 3303 -10 540 324 52 6 chr3 80955591 80955764 -137081394 - MIR SINE MIR -29 233 53 318 357 29 21 chr3 80956457 80956597 -137080561 + MER5A DNA MER1_type 47 187 -2 980 229 4 46 chr3 80956960 80957200 -137079958 - MIR SINE MIR -4 258 29 276 336 8 47 chr3 80957424 80957552 -137079606 - MIR SINE MIR -119 143 21 2118 118 35 59 chr3 80957835 80958044 -137079114 - THE1B LTR MaLR 0 364 166 2333 95 3 3 chr3 80958044 80958349 -137078809 + AluSg SINE Alu 1 305 -5 2118 118 35 59 chr3 80958349 80958512 -137078646 - THE1B LTR MaLR -198 166 1 369 327 68 6 chr3 80958903 80959065 -137078093 + MIR SINE MIR 77 248 -14 233 257 29 14 chr3 80959320 80959390 -137077768 + MIR SINE MIR 162 232 -30 511 168 52 152 chr3 80959861 80960052 -137077106 + MER5B DNA MER1_type 1 172 -6 2391 76 3 0 chr3 80962245 80962549 -137074609 + AluY SINE Alu 1 305 -6 23 0 0 0 chr3 80962944 80962967 -137074191 + AT_rich Low_complexity Low_complexity 1 23 0 207 282 71 0 chr3 80963319 80963374 -137073784 + MIR SINE MIR 106 170 -92 3746 61 2 0 chr3 80963374 80963848 -137073310 - L1PA8 LINE L1 0 6172 5698 207 282 71 0 chr3 80963848 80963877 -137073281 + MIR SINE MIR 170 196 -66 481 213 33 135 chr3 80963893 80964137 -137073021 - MER102b DNA MER1_type -5 336 118 502 280 16 0 chr3 80965205 80965330 -137071828 + L2 LINE L2 3146 3272 0 446 351 23 12 chr3 80965447 80965618 -137071540 - MIR SINE MIR -89 173 1 210 333 0 0 chr3 80967851 80967914 -137069244 - MIR SINE MIR 0 262 200 215 158 26 0 chr3 80967917 80967955 -137069203 + MER5B DNA MER1_type 140 178 0 6014 94 41 3 chr3 80968412 80968937 -137068221 - L1PA13 LINE L1 0 6163 5660 1794 143 69 39 chr3 80968937 80969301 -137067857 + THE1C LTR MaLR 1 375 0 8598 128 75 34 chr3 80969301 80970817 -137066341 + THE1C-int LTR MaLR 1 1578 -2 1570 136 82 62 chr3 80970819 80971187 -137065971 + THE1C LTR MaLR 1 375 0 6014 94 41 3 chr3 80971187 80971813 -137065345 - L1PA13 LINE L1 -503 5660 4999 345 151 0 0 chr3 80971821 80971894 -137065264 - L1 LINE L1 -1094 5052 4980 15392 27 1 5 chr3 80971933 80974542 -137062616 - L1PA4 LINE L1 -3 6152 3553 12585 184 24 3 chr3 80974543 80977229 -137059929 - L1PA13 LINE L1 -1153 4993 2252 530 219 0 31 chr3 80977237 80977365 -137059793 + MIR SINE MIR 74 197 -65 534 326 50 21 chr3 80977565 80977804 -137059354 + MIR SINE MIR 13 258 -4 597 219 81 86 chr3 80977853 80977961 -137059197 + MER58A DNA MER1_type 11 119 -2301 1173 160 14 0 chr3 80977961 80978173 -137058985 - L1MA5A LINE L1 -3 6294 6080 597 219 81 86 chr3 80978173 80978274 -137058884 + MER58A DNA MER1_type 119 219 -5 400 324 0 0 chr3 80978343 80978454 -137058704 - MIR SINE MIR -99 163 53 243 269 15 15 chr3 80979704 80979771 -137057387 - L2 LINE L2 -9 3263 3197 211 357 78 20 chr3 80980479 80980773 -137056385 - L3 LINE CR1 -557 1020 710 372 242 53 20 chr3 80981544 80981713 -137055445 - L1ME LINE L1 -387 5734 5561 19395 128 10 51 chr3 80981733 80986324 -137050834 + L1PA7 LINE L1 8 4479 -1982 7580 102 24 18 chr3 80986327 80988224 -137048934 + L1PA7 LINE L1 4544 6451 -18 2778 64 32 0 chr3 80987848 80988224 -137048934 + L1PA7 LINE L1 5749 6158 0 199 0 0 0 chr3 80988224 80988246 -137048912 + (TAA)n Simple_repeat Simple_repeat 3 180 0 279 259 99 0 chr3 80988257 80988388 -137048770 - L1ME LINE L1 -2261 5547 5404 1036 279 90 46 chr3 80988512 80989013 -137048145 - L1ME3A LINE L1 -13 6157 5635 5187 76 1 7 chr3 80989427 80990122 -137047036 - L1PA8 LINE L1 0 6172 5482 765 114 8 0 chr3 80990122 80990253 -137046905 - L1PA8 LINE L1 -958 5188 5057 * 3305 102 2 2 chr3 80990251 80990759 -137046399 + L1PA8 LINE L1 4537 5044 -1102 279 324 221 0 chr3 80991443 80991588 -137045570 - MIR SINE MIR -36 226 50 22 35 0 0 chr3 80991921 80991950 -137045208 + AT_rich Low_complexity Low_complexity 1 29 0 336 244 11 22 chr3 80991962 80992052 -137045106 - MIR SINE MIR -18 244 156 725 259 160 42 chr3 80992064 80992546 -137044612 - MLT1K LTR MaLR -36 552 14 235 299 39 65 chr3 80992575 80992729 -137044429 - MIR SINE MIR -109 153 4 308 283 104 46 chr3 80993303 80993543 -137043615 - L2 LINE L2 -41 3272 3019 755 316 74 34 chr3 80993655 80994209 -137042949 - MLT1K LTR MaLR -8 580 5 1837 151 57 6 chr3 80995239 80995570 -137041588 + MER7A DNA MER2_type 1 346 0 455 308 74 44 chr3 80995595 80995751 -137041407 - MLT1I LTR MaLR -22 387 237 1137 253 112 0 chr3 80995751 80996055 -137041103 + MER58B DNA MER1_type 4 341 0 455 308 74 44 chr3 80996055 80996236 -137040922 - MLT1I LTR MaLR -172 237 40 721 259 38 28 chr3 80996325 80996537 -137040621 - MIR SINE MIR -41 221 8 2200 123 3 0 chr3 80996803 80997103 -137040055 + AluSg SINE Alu 1 301 -9 1541 143 0 143 chr3 80997651 80998015 -137039143 + AluJb SINE Alu 1 312 0 21 0 0 0 chr3 80998202 80998223 -137038935 + AT_rich Low_complexity Low_complexity 1 21 0 6275 77 1 0 chr3 80998386 80999215 -137037943 + HERVL LTR ERVL 3025 3854 -1800 419 178 10 20 chr3 80999255 80999356 -137037802 - MSTC-int LTR MaLR -1550 101 2 1996 124 121 26 chr3 80999361 80999748 -137037410 - MSTC LTR MaLR -4 424 1 340 281 78 23 chr3 81000126 81000254 -137036904 - MLT1J2 LTR MaLR -49 401 267 1968 147 32 74 chr3 81000629 81001009 -137036149 - THE1B LTR MaLR 0 364 1 774 180 0 8 chr3 81001862 81001984 -137035174 + FLAM_C SINE Alu 1 122 -16 369 0 0 0 chr3 81001984 81002025 -137035133 + (TA)n Simple_repeat Simple_repeat 1 41 0 279 349 40 16 chr3 81002054 81002180 -137034978 + MIR SINE MIR 48 176 -86 730 217 74 6 chr3 81002858 81003033 -137034125 - MER5A DNA MER1_type 0 189 3 1628 206 3 22 chr3 81003104 81003419 -137033739 - AluJo SINE Alu -3 309 1 762 238 23 0 chr3 81003419 81003591 -137033567 + MER58A DNA MER1_type 48 223 -1 433 359 30 20 chr3 81004342 81004540 -137032618 - MIR SINE MIR -6 256 57 339 233 11 0 chr3 81004920 81005010 -137032148 + MER117 DNA MER1_type 1 91 -106 454 255 189 31 chr3 81005072 81005268 -137031890 - MIR SINE MIR -3 259 33 1744 234 6 22 chr3 81005375 81005867 -137031291 - Charlie4a DNA MER1_type 0 508 25 306 309 93 0 chr3 81005964 81006061 -137031097 + MIR SINE MIR 78 183 -79 288 289 84 60 chr3 81006376 81006706 -137030452 - L2 LINE L2 -220 3052 2695 312 227 136 136 chr3 81006802 81007119 -137030039 + Charlie8 DNA MER1_type 134 450 -1967 567 368 91 27 chr3 81007236 81007864 -137029294 - L2 LINE L2 -655 2659 1992 718 270 36 5 chr3 81008095 81008291 -137028867 - MIR SINE MIR -55 207 6 206 315 0 0 chr3 81008479 81008533 -137028625 + L2 LINE L2 3219 3272 0 2208 111 3 16 chr3 81009453 81009769 -137027389 + AluSq SINE Alu 1 312 -1 399 300 8 17 chr3 81011950 81012070 -137025088 - MER5A DNA MER1_type -22 167 49 1814 135 65 6 chr3 81012070 81012097 -137025061 - L1MA8 LINE L1 -3 6288 6264 15550 144 29 9 chr3 81012097 81014761 -137022397 - Tigger2 DNA MER2_type 0 2718 1 1814 135 65 6 chr3 81014761 81015088 -137022070 - L1MA8 LINE L1 -27 6264 5913 1906 163 134 8 chr3 81015226 81015606 -137021552 + MSTA LTR MaLR 1 428 0 191 325 145 12 chr3 81015729 81015812 -137021346 - MIR SINE MIR -143 119 26 742 275 67 34 chr3 81016089 81016416 -137020742 - LTR16A LTR ERVL -12 438 101 203 210 49 99 chr3 81017442 81017523 -137019635 - L3 LINE CR1 -5 1572 1496 796 179 0 32 chr3 81017904 81018060 -137019098 - MER5A DNA MER1_type -34 155 5 23 68 0 0 chr3 81018084 81018128 -137019030 + AT_rich Low_complexity Low_complexity 1 44 0 1919 161 0 0 chr3 81018212 81018492 -137018666 + AluSx SINE Alu 1 280 -32 324 0 0 0 chr3 81018495 81018531 -137018627 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 261 83 0 0 chr3 81018573 81018609 -137018549 + (TA)n Simple_repeat Simple_repeat 2 37 0 27 49 0 0 chr3 81019379 81019420 -137017738 + AT_rich Low_complexity Low_complexity 1 41 0 2397 127 25 0 chr3 81019439 81019794 -137017364 + THE1B LTR MaLR 1 364 0 674 296 93 45 chr3 81021365 81022007 -137015151 - L2 LINE L2 -25 3288 2620 482 258 67 22 chr3 81022132 81022310 -137014848 + MLT1L LTR MaLR 37 222 -393 266 302 229 5 chr3 81022469 81022674 -137014484 + MLT1L LTR MaLR 365 615 0 225 316 25 0 chr3 81022881 81022960 -137014198 - MLT1J LTR MaLR -212 299 219 730 287 114 42 chr3 81023279 81023638 -137013520 + MLT1I LTR MaLR 25 409 0 1378 89 13 18 chr3 81023970 81024194 -137012964 - MER11B LTR ERVK 0 1236 1014 * 2315 101 38 33 chr3 81024190 81024645 -137012513 - MER11B LTR ERVK -688 548 1 1830 172 83 51 chr3 81024663 81025133 -137012025 - MER31A LTR ERV1 0 485 1 57 47 0 0 chr3 81026349 81026434 -137010724 + AT_rich Low_complexity Low_complexity 1 85 0 482 324 72 31 chr3 81026699 81026921 -137010237 + MIR SINE MIR 16 246 -16 2284 144 25 0 chr3 81026936 81027291 -137009867 + THE1B LTR MaLR 1 364 0 8019 107 25 2 chr3 81027291 81028497 -137008661 + THE1B-int LTR MaLR 1 1233 -347 1794 153 3 0 chr3 81028497 81028785 -137008373 - MLT2A2 LTR ERVL -164 289 1 1522 81 0 0 chr3 81028847 81029057 -137008101 + THE1B-int LTR MaLR 1371 1580 0 2323 135 22 0 chr3 81029057 81029413 -137007745 + THE1B LTR MaLR 1 364 0 599 196 132 92 chr3 81029413 81029465 -137007693 + L1MD2 LINE L1 6086 6134 -225 297 51 0 0 chr3 81029465 81029504 -137007654 + (CA)n Simple_repeat Simple_repeat 2 40 0 599 196 132 92 chr3 81029504 81029701 -137007457 + L1MD2 LINE L1 6134 6345 -14 228 349 28 9 chr3 81030142 81030251 -137006907 - MLT2E LTR ERVL -477 151 41 452 270 17 0 chr3 81030810 81030925 -137006233 + L2 LINE L2 3196 3312 -1 7481 35 0 0 chr3 81032128 81033054 -137004104 - L1PA4 LINE L1 -8 6147 5222 1286 42 0 0 chr3 81033054 81033221 -137003937 + L1PA4 LINE L1 5065 5231 -915 1334 191 52 131 chr3 81033896 81034344 -137002814 - L1ME3A LINE L1 -69 6101 5710 1917 141 0 21 chr3 81034344 81034628 -137002530 - AluSq SINE Alu -21 292 15 1334 191 52 131 chr3 81034628 81034775 -137002383 - L1ME3A LINE L1 -460 5710 5553 219 146 0 0 chr3 81035868 81035909 -137001249 + (TA)n Simple_repeat Simple_repeat 1 41 0 2358 87 7 0 chr3 81035914 81036203 -137000955 + AluSc SINE Alu 1 291 -18 198 0 0 0 chr3 81036203 81036225 -137000933 + (TA)n Simple_repeat Simple_repeat 2 23 0 298 271 112 28 chr3 81036446 81036660 -137000498 - L1MC/D LINE L1 -2000 5808 5577 342 195 0 0 chr3 81036791 81036868 -137000290 + (CA)n Simple_repeat Simple_repeat 2 78 0 329 307 73 66 chr3 81036894 81036991 -137000167 + MIR3 SINE MIR 60 160 -48 526 252 10 92 chr3 81036991 81037072 -137000086 + MER5A DNA MER1_type 1 87 -102 2200 110 0 38 chr3 81037072 81037391 -136999767 + AluSg SINE Alu 1 307 -3 526 252 10 92 chr3 81037391 81037515 -136999643 + MER5A DNA MER1_type 87 189 0 329 307 73 66 chr3 81037515 81037554 -136999604 + MIR3 SINE MIR 160 197 -11 2366 111 14 32 chr3 81037727 81038098 -136999060 + THE1B LTR MaLR 1 364 0 374 322 70 10 chr3 81038470 81038669 -136998489 + MIR SINE MIR 23 233 -29 2263 73 11 0 chr3 81038966 81039252 -136997906 - AluY SINE Alu -6 305 17 230 309 75 32 chr3 81039262 81039356 -136997802 - L2 LINE L2 -3 3310 3213 711 257 12 39 chr3 81039592 81039849 -136997309 + MLT1K LTR MaLR 320 569 -19 432 260 65 16 chr3 81040073 81040196 -136996962 - MER58B DNA MER1_type 0 341 213 1115 293 127 45 chr3 81040248 81040816 -136996342 - L2 LINE L2 0 3313 2626 1382 193 29 6 chr3 81040816 81041132 -136996026 - MER33 DNA MER1_type -1 323 1 1115 293 127 45 chr3 81041132 81041517 -136995641 - L2 LINE L2 -687 2626 2274 1075 162 208 0 chr3 81042766 81042897 -136994261 - AluJo SINE Alu -8 294 191 650 12 0 12 chr3 81042897 81042977 -136994181 + (TTTTA)n Simple_repeat Simple_repeat 2 80 0 1075 162 208 0 chr3 81042977 81043086 -136994072 - AluJo SINE Alu -111 191 4 411 316 54 12 chr3 81043296 81043464 -136993694 + MIR SINE MIR 20 194 -68 2461 66 0 16 chr3 81044296 81044600 -136992558 + AluY SINE Alu 1 299 -12 3271 84 32 0 chr3 81044897 81045336 -136991822 - MLT2A2 LTR ERVL 0 453 1 627 315 94 0 chr3 81045366 81045579 -136991579 + MIR SINE MIR 18 250 -12 483 208 111 1 chr3 81045615 81045732 -136991426 + MIR SINE MIR 64 191 -65 653 275 71 21 chr3 81045767 81046007 -136991151 - MIR SINE MIR -6 256 5 542 296 95 21 chr3 81046011 81046295 -136990863 - MER102b DNA MER1_type 0 341 37 3773 190 103 60 chr3 81046349 81047655 -136989503 + Charlie1 DNA MER1_type 2 1251 -1510 1817 185 3 16 chr3 81047655 81047969 -136989189 - AluJb SINE Alu -2 310 1 3773 190 103 60 chr3 81047969 81047997 -136989161 + Charlie1 DNA MER1_type 1251 1276 -1485 4504 30 4 2 chr3 81047997 81048532 -136988626 + L1PA3 LINE L1 5620 6155 0 3773 190 103 60 chr3 81048532 81048584 -136988574 + Charlie1 DNA MER1_type 1276 2760 -1 643 319 0 0 chr3 81048594 81048782 -136988376 + MER5A DNA MER1_type 2 189 0 227 330 30 10 chr3 81049708 81049808 -136987350 + MER5B DNA MER1_type 29 130 -48 3758 157 30 4 chr3 81049812 81050515 -136986643 - L1MB2 LINE L1 -2 6169 5449 262 257 149 54 chr3 81050762 81050910 -136986248 + MIR SINE MIR 27 188 -74 1249 111 0 12 chr3 81050929 81051101 -136986057 - AluSg/x SINE Alu -11 301 132 220 333 86 0 chr3 81051101 81051206 -136985952 + MIR SINE MIR 51 164 -98 253 326 58 0 chr3 81051217 81051355 -136985803 + MLT1J LTR MaLR 13 158 -353 197 128 0 26 chr3 81052306 81052345 -136984813 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 245 365 80 15 chr3 81052350 81052487 -136984671 - L2 LINE L2 0 3272 3127 1876 158 58 25 chr3 81053004 81053366 -136983792 + THE1C LTR MaLR 2 375 0 252 0 0 0 chr3 81054406 81054434 -136982724 + (A)n Simple_repeat Simple_repeat 1 28 0 530 167 37 0 chr3 81055139 81055247 -136981911 + L1MC3 LINE L1 7519 7630 -155 7398 41 10 5 chr3 81056077 81057028 -136980130 - L1PA5 LINE L1 0 6154 5203 214 286 0 0 chr3 81057033 81057089 -136980069 + MIR SINE MIR 92 147 -115 209 291 39 48 chr3 81057191 81057294 -136979864 + MIR SINE MIR 109 210 -52 459 346 63 51 chr3 81057336 81057723 -136979435 - L2 LINE L2 -79 3234 2840 2249 110 0 7 chr3 81057723 81058033 -136979125 + AluSp SINE Alu 1 308 -5 459 346 63 51 chr3 81058033 81058058 -136979100 - L2 LINE L2 -473 2840 2817 438 227 110 19 chr3 81058174 81058334 -136978824 + MIR SINE MIR 44 222 -40 643 256 183 0 chr3 81059389 81059580 -136977578 - MIR SINE MIR -27 235 10 610 252 14 43 chr3 81059640 81059850 -136977308 - MER20 DNA MER1_type 0 219 16 417 226 29 0 chr3 81061289 81061391 -136975767 + MSTC LTR MaLR 1 105 -323 1729 155 129 6 chr3 81061395 81061744 -136975414 - MSTA LTR MaLR 0 428 37 3041 57 2 117 chr3 81061844 81062350 -136974808 - LTR7 LTR ERV1 -2 448 1 346 287 20 10 chr3 81062367 81062468 -136974690 - L2 LINE L2 -3 3269 3168 * 470 282 7 47 chr3 81062459 81062544 -136974614 - MIR SINE MIR -19 243 165 1562 226 157 4 chr3 81062544 81063014 -136974144 - MLT1F LTR MaLR 0 542 1 470 282 7 47 chr3 81063014 81063077 -136974081 - MIR SINE MIR -97 165 101 191 300 71 14 chr3 81063282 81063352 -136973806 - MIR3 SINE MIR -54 154 81 1186 185 170 12 chr3 81063963 81064222 -136972936 - AluJo SINE Alu -2 300 1 973 142 49 111 chr3 81064279 81064505 -136972653 + MER20 DNA MER1_type 4 215 -4 201 341 23 38 chr3 81065176 81065308 -136971850 + MIR SINE MIR 8 137 -125 271 281 47 37 chr3 81065329 81065478 -136971680 + MIR SINE MIR 110 250 -12 433 245 87 54 chr3 81065651 81065986 -136971172 - L1ME4a LINE L1 -19 6102 5757 631 298 31 22 chr3 81066897 81067122 -136970036 - MIR SINE MIR 0 262 36 298 219 55 0 chr3 81068464 81068537 -136968621 - MER103 DNA DNA -73 93 17 268 136 197 0 chr3 81069839 81069905 -136967253 + L1MA7 LINE L1 6209 6287 -4 21 57 0 0 chr3 81070090 81070125 -136967033 + AT_rich Low_complexity Low_complexity 1 35 0 403 243 56 0 chr3 81070164 81070308 -136966850 + L1MC/D LINE L1 5337 5488 -2320 22 35 0 0 chr3 81071283 81071312 -136965846 + AT_rich Low_complexity Low_complexity 1 29 0 2387 133 8 0 chr3 81071400 81071761 -136965397 + THE1B LTR MaLR 1 364 0 521 270 72 7 chr3 81073090 81073242 -136963916 - MIR SINE MIR -15 247 86 479 307 65 94 chr3 81073763 81074115 -136963043 - L2 LINE L2 0 3272 2931 683 274 24 24 chr3 81075195 81075403 -136961755 - MIR SINE MIR -15 247 40 1643 207 39 42 chr3 81075548 81075958 -136961200 - LTR2 LTR ERV1 0 449 41 25 31 0 0 chr3 81076235 81076267 -136960891 + AT_rich Low_complexity Low_complexity 1 32 0 657 358 55 24 chr3 81076721 81077176 -136959982 + L2 LINE L2 2149 2617 -697 296 273 61 40 chr3 81077343 81077442 -136959716 + L2 LINE L2 3161 3261 -11 257 269 143 8 chr3 81077519 81077638 -136959520 + MIR SINE MIR 122 256 -6 414 342 40 41 chr3 81078936 81079272 -136957886 - L2 LINE L2 -224 3048 2703 613 306 0 12 chr3 81079702 81079862 -136957296 - MER5B DNA MER1_type -17 161 4 219 281 0 0 chr3 81079868 81079925 -136957233 + MIR SINE MIR 12 68 -194 404 301 66 0 chr3 81080071 81080207 -136956951 + MIR SINE MIR 118 262 0 26 0 0 0 chr3 81080765 81080791 -136956367 + AT_rich Low_complexity Low_complexity 1 26 0 2361 170 16 12 chr3 81081178 81081602 -136955556 - MSTC LTR MaLR -2 426 1 3617 245 113 49 chr3 81081602 81081884 -136955274 - MSTC-int LTR MaLR 0 1735 1473 1574 211 7 0 chr3 81081884 81082173 -136954985 + AluJo SINE Alu 1 291 -21 3617 245 113 49 chr3 81082173 81083166 -136953992 - MSTC-int LTR MaLR -262 1473 378 3033 96 58 0 chr3 81083166 81083206 -136953952 - MLT2A2 LTR ERVL 0 453 417 372 43 0 0 chr3 81083206 81083252 -136953906 + (TA)n Simple_repeat Simple_repeat 2 47 0 3033 96 58 0 chr3 81083252 81083639 -136953519 - MLT2A2 LTR ERVL -36 417 1 3431 84 14 12 chr3 81083639 81083829 -136953329 - HERVL-A2 LTR ERVL 0 5654 5466 2094 171 28 22 chr3 81083829 81084191 -136952967 + THE1B LTR MaLR 1 364 0 3431 84 14 12 chr3 81084191 81084502 -136952656 - HERVL-A2 LTR ERVL -188 5466 5152 25 0 0 0 chr3 81084625 81084650 -136952508 + AT_rich Low_complexity Low_complexity 1 25 0 243 0 0 0 chr3 81085368 81085395 -136951763 + (A)n Simple_repeat Simple_repeat 1 27 0 636 237 65 109 chr3 81085579 81085963 -136951195 + MLT1G3 LTR MaLR 1 413 -175 500 289 35 25 chr3 81086039 81086236 -136950922 + MIR SINE MIR 8 206 -56 183 156 0 0 chr3 81086270 81086302 -136950856 + (CACCAT)n Simple_repeat Simple_repeat 1 32 0 193 344 0 0 chr3 81086412 81086473 -136950685 + MIR SINE MIR 202 262 0 204 287 9 111 chr3 81086840 81087056 -136950102 - L2 LINE L2 -252 3020 2827 188 293 40 27 chr3 81087199 81087274 -136949884 - L2 LINE L2 -693 2621 2546 525 239 219 0 chr3 81087451 81087656 -136949502 + MIR SINE MIR 13 262 0 218 274 137 0 chr3 81087681 81087754 -136949404 - L2 LINE L2 -46 3267 3185 315 0 0 0 chr3 81088090 81088125 -136949033 + (T)n Simple_repeat Simple_repeat 1 35 0 209 160 0 20 chr3 81088782 81088832 -136948326 + CT-rich Low_complexity Low_complexity 3 51 0 270 149 0 21 chr3 81089164 81089211 -136947947 - MLT1K LTR MaLR -7 581 536 234 91 0 0 chr3 81089213 81089246 -136947912 + (T)n Simple_repeat Simple_repeat 1 33 0 227 273 182 0 chr3 81089408 81089496 -136947662 - MLT1K LTR MaLR -169 419 316 862 176 163 29 chr3 81089599 81089844 -136947314 - MER5C DNA MER1_type 0 324 47 841 266 22 22 chr3 81089877 81090099 -136947059 + MER58A DNA MER1_type 2 223 -1 1848 157 40 10 chr3 81090251 81090550 -136946608 + AluSg SINE Alu 1 308 -2 196 351 0 39 chr3 81090916 81090993 -136946165 - L2 LINE L2 -5 3308 3235 279 336 153 25 chr3 81091264 81091499 -136945659 - L2 LINE L2 -352 2962 2698 323 275 142 8 chr3 81091527 81091647 -136945511 - MIR SINE MIR 0 262 127 933 175 0 0 chr3 81092206 81092383 -136944775 + L1MB5 LINE L1 5653 5829 -345 1444 189 48 51 chr3 81092390 81092745 -136944413 + MER46B DNA MER2_type 8 236 0 1272 190 42 32 chr3 81092753 81093064 -136944094 + L1MB5 LINE L1 5848 6161 -13 1654 230 49 32 chr3 81094777 81095250 -136941908 - MLT1E LTR MaLR 0 593 113 3411 70 2 2 chr3 81095256 81095700 -136941458 - L1PA7 LINE L1 0 6154 5711 368 217 158 17 chr3 81095701 81095821 -136941337 - MLT1E LTR MaLR -448 145 9 231 61 0 0 chr3 81095824 81095857 -136941301 + (CA)n Simple_repeat Simple_repeat 2 34 0 453 284 49 6 chr3 81096378 81096561 -136940597 - MER117 DNA MER1_type -5 192 2 35 83 0 0 chr3 81096716 81096800 -136940358 + AT_rich Low_complexity Low_complexity 1 84 0 1149 210 32 75 chr3 81097337 81097709 -136939449 - MLT1A2 LTR MaLR -17 357 2 325 299 191 13 chr3 81097767 81097924 -136939234 - MIR SINE MIR -9 253 69 677 338 30 41 chr3 81097925 81098360 -136938798 - L2 LINE L2 0 3313 2884 296 270 0 0 chr3 81098475 81098538 -136938620 - MIR SINE MIR -6 256 194 230 405 27 18 chr3 81100027 81100138 -136937020 - MIR SINE MIR -81 127 16 25 31 0 0 chr3 81100991 81101023 -136936135 + AT_rich Low_complexity Low_complexity 1 32 0 520 219 25 56 chr3 81101297 81101457 -136935701 - MIR SINE MIR -21 241 87 392 37 19 0 chr3 81102037 81102091 -136935067 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 266 345 17 17 chr3 81102387 81102503 -136934655 - MIR SINE MIR -63 145 30 1131 159 20 0 chr3 81102674 81102875 -136934283 + MER3 DNA MER1_type 1 205 -4 287 257 18 46 chr3 81103041 81103150 -136934008 - MIR SINE MIR -65 197 92 1597 177 86 9 chr3 81103255 81103594 -136933564 - MLT1A1 LTR MaLR 0 365 1 259 370 14 14 chr3 81103957 81104095 -136933063 - MLT1K LTR MaLR -162 426 289 485 229 66 66 chr3 81104324 81104551 -136932607 - MLT1H1 LTR MaLR -291 239 13 243 0 0 0 chr3 81104784 81104811 -136932347 + (T)n Simple_repeat Simple_repeat 1 27 0 1037 286 55 14 chr3 81105429 81105796 -136931362 - MLT1H1 LTR MaLR -141 414 33 524 302 16 21 chr3 81105822 81106011 -136931147 - MLT1K LTR MaLR -393 195 8 353 248 156 0 chr3 81106122 81106231 -136930927 + MIR SINE MIR 65 190 -72 645 248 86 43 chr3 81107123 81107209 -136929949 - MER113 DNA MER1_type? -24 497 416 2234 106 3 0 chr3 81107209 81107502 -136929656 - AluSx SINE Alu -18 294 1 645 248 86 43 chr3 81107502 81107786 -136929372 - MER113 DNA MER1_type? -105 416 111 258 384 69 5 chr3 81108330 81108356 -136928802 + L2 LINE L2 2836 2859 -413 255 79 0 0 chr3 81108356 81108394 -136928764 + (CA)n Simple_repeat Simple_repeat 2 39 0 258 384 69 5 chr3 81108394 81108570 -136928588 + L2 LINE L2 2859 3051 -221 534 265 39 28 chr3 81108587 81108768 -136928390 + MIR SINE MIR 67 249 -13 182 184 0 82 chr3 81109017 81109066 -136928092 - MIR SINE MIR 0 262 218 1814 186 48 20 chr3 81109525 81109880 -136927278 + MLT1A1 LTR MaLR 1 365 0 1709 182 22 22 chr3 81109973 81110335 -136926823 - MLT1A1 LTR MaLR -3 362 1 211 222 0 0 chr3 81111342 81111387 -136925771 - L2 LINE L2 0 3313 3269 250 227 41 31 chr3 81111387 81111484 -136925674 - MLT1L LTR MaLR -9 606 509 282 228 22 33 chr3 81111623 81111715 -136925443 - MLT1L LTR MaLR -324 291 201 330 371 39 28 chr3 81111842 81112020 -136925138 - L2 LINE L2 -35 3237 3058 1637 152 62 17 chr3 81112291 81112580 -136924578 - AluJo SINE Alu 0 312 11 1970 129 0 0 chr3 81113010 81113274 -136923884 + AluSx SINE Alu 1 264 -48 2001 115 0 0 chr3 81113274 81113542 -136923616 + AluSq SINE Alu 36 305 -8 510 340 78 0 chr3 81113608 81113864 -136923294 - Charlie8 DNA MER1_type -2141 276 1 274 261 100 8 chr3 81114312 81114442 -136922716 + MER113 DNA MER1_type? 6 147 -374 382 220 112 64 chr3 81114447 81114686 -136922472 - MLT1H LTR MaLR -5 537 284 308 293 48 14 chr3 81114766 81114913 -136922245 - MLT1H LTR MaLR -387 162 11 2483 58 0 3 chr3 81115105 81115414 -136921744 - AluY SINE Alu -3 308 1 281 344 114 0 chr3 81118689 81118820 -136918338 - MIR SINE MIR -70 192 47 444 268 24 0 chr3 81119369 81119492 -136917666 - MIR SINE MIR 0 262 137 270 0 0 0 chr3 81119899 81119929 -136917229 + (A)n Simple_repeat Simple_repeat 1 30 0 2277 149 61 2 chr3 81119978 81120386 -136916772 - MSTB1 LTR MaLR 0 432 1 220 250 97 14 chr3 81120992 81121064 -136916094 - MIR3 SINE MIR -9 199 122 356 0 0 22 chr3 81121473 81121518 -136915640 + (CAAAA)n Simple_repeat Simple_repeat 4 47 0 551 267 30 0 chr3 81121530 81121665 -136915493 + MIR SINE MIR 35 173 -89 3899 132 67 5 chr3 81121665 81122334 -136914824 - MER50 LTR ERV1 -23 711 1 251 259 111 0 chr3 81122334 81122415 -136914743 + MIR SINE MIR 169 258 -4 963 221 64 92 chr3 81122536 81123098 -136914060 - LTR49 LTR ERV1 -49 546 1 288 0 0 0 chr3 81123343 81123375 -136913783 + (TAA)n Simple_repeat Simple_repeat 2 33 0 777 183 39 11 chr3 81123375 81123544 -136913614 - MER4C LTR ERV1 -8 457 281 1991 137 48 31 chr3 81123606 81123964 -136913194 - THE1B LTR MaLR 0 364 1 690 167 173 69 chr3 81123980 81124360 -136912798 - MER4A LTR ERV1 -200 347 1 1573 167 178 50 chr3 81124460 81124944 -136912214 + LTR49 LTR ERV1 1 739 -48 1562 205 61 14 chr3 81126273 81126698 -136910460 - LTR56 LTR ERV1 0 445 1 3473 138 49 0 chr3 81127773 81128340 -136908818 - LTR49 LTR ERV1 0 595 1 2723 179 56 59 chr3 81128390 81129084 -136908074 - LTR8A LTR ERV1 -2 725 34 22 35 0 0 chr3 81129161 81129190 -136907968 + AT_rich Low_complexity Low_complexity 1 29 0 243 221 35 0 chr3 81130240 81130326 -136906832 + (TG)n Simple_repeat Simple_repeat 2 90 0 868 185 0 19 chr3 81130341 81130498 -136906660 - FRAM SINE Alu -22 154 1 2041 142 129 101 chr3 81133149 81133784 -136903374 - MER4A LTR ERV1 -9 655 3 905 232 6 0 chr3 81134619 81134796 -136902362 - MER45A DNA AcHobo 0 178 1 186 43 0 0 chr3 81135379 81135402 -136901756 + (TA)n Simple_repeat Simple_repeat 1 23 0 2269 121 0 0 chr3 81137900 81138198 -136898960 - AluSc SINE Alu -11 298 1 4611 160 34 36 chr3 81138521 81139383 -136897775 - MER21B LTR ERV1 -3 860 1 639 305 119 67 chr3 81140824 81141405 -136895753 - L2 LINE L2 0 3313 2703 879 270 75 32 chr3 81141455 81141575 -136895583 + LTR16C LTR ERVL 143 256 -235 860 181 14 68 chr3 81141575 81141796 -136895362 + MER3 DNA MER1_type 1 209 0 879 270 75 32 chr3 81141796 81141953 -136895205 + LTR16C LTR ERVL 256 432 -59 230 319 33 11 chr3 81141966 81142057 -136895101 - L2 LINE L2 -609 2705 2613 706 242 98 0 chr3 81142970 81143123 -136894035 + MER63A DNA MER1_type 42 209 -1 699 326 124 33 chr3 81143204 81143509 -136893649 + L3 LINE CR1 120 396 -1181 817 226 66 9 chr3 81143509 81143721 -136893437 + MER58A DNA MER1_type 1 224 0 699 326 124 33 chr3 81143721 81144013 -136893145 + L3 LINE CR1 396 771 -806 569 257 248 5 chr3 81144099 81144313 -136892845 + L3 LINE CR1 1244 1509 -68 216 228 109 43 chr3 81144346 81144438 -136892720 + MIR3 SINE MIR 111 208 0 327 104 0 0 chr3 81144538 81144586 -136892572 + (T)n Simple_repeat Simple_repeat 1 48 0 623 246 91 4 chr3 81145444 81145676 -136891482 - MER20B DNA MER1_type 0 783 532 633 233 34 23 chr3 81145849 81146025 -136891133 - MER20B DNA MER1_type -314 469 292 1937 183 59 15 chr3 81146027 81146432 -136890726 + L1MB7 LINE L1 5742 6164 -20 745 268 67 42 chr3 81146437 81146721 -136890437 - MER20B DNA MER1_type -489 294 4 24 32 0 0 chr3 81147136 81147167 -136889991 + AT_rich Low_complexity Low_complexity 1 31 0 2213 106 3 0 chr3 81147178 81147471 -136889687 + AluSq SINE Alu 1 294 -19 267 31 0 0 chr3 81148423 81148455 -136888703 + (GA)n Simple_repeat Simple_repeat 1 32 0 834 144 14 95 chr3 81148740 81148962 -136888196 + L1MC5 LINE L1 7238 7441 -520 2701 201 63 68 chr3 81148972 81150013 -136887145 - L1MC5 LINE L1 -50 7911 6876 189 346 20 20 chr3 81150224 81150325 -136886833 - MIR SINE MIR -62 146 46 759 230 84 52 chr3 81151375 81151588 -136885570 - MER58A DNA MER1_type -4 220 1 411 270 215 0 chr3 81151774 81151974 -136885184 - Charlie8 DNA MER1_type -2142 275 33 213 345 0 12 chr3 81152026 81152110 -136885048 + GA-rich Low_complexity Low_complexity 1 83 0 546 248 34 27 chr3 81152416 81152565 -136884593 - MER5B DNA MER1_type -27 151 2 1317 221 7 20 chr3 81152775 81153078 -136884080 + MER58B DNA MER1_type 43 341 0 1860 202 31 23 chr3 81153200 81153680 -136883478 - Charlie4a DNA MER1_type -6 502 19 594 292 27 55 chr3 81153731 81153988 -136883170 - MLT1J2 LTR MaLR -190 260 11 801 233 31 16 chr3 81154047 81154240 -136882918 - MLT1A2 LTR MaLR -6 368 173 323 195 2 7 chr3 81154251 81154319 -136882839 - MLT1C LTR MaLR -330 66 1 15464 163 27 26 chr3 81154897 81156877 -136880281 - L1MA8 LINE L1 0 7251 5274 1726 182 7 10 chr3 81156877 81157174 -136879984 - AluJo SINE Alu -11 301 6 15464 163 27 26 chr3 81157174 81159597 -136877561 - L1MA8 LINE L1 -1977 5274 2840 18808 181 23 14 chr3 81159609 81162168 -136874990 + L1PA13 LINE L1 1 2535 -4279 2369 87 0 13 chr3 81162168 81162480 -136874678 - AluY SINE Alu -3 308 1 18808 181 23 14 chr3 81162480 81163592 -136873566 + L1PA13 LINE L1 2535 3635 -3179 1803 105 8 23 chr3 81163592 81163849 -136873309 + AluSg SINE Alu 54 306 -4 18808 181 23 14 chr3 81163849 81166904 -136870254 + L1PA13 LINE L1 3635 6803 -11 3741 245 52 53 chr3 81166957 81168906 -136868252 - L1MA8 LINE L1 -4314 2792 7 21 57 0 0 chr3 81169285 81169320 -136867838 + AT_rich Low_complexity Low_complexity 1 35 0 224 217 0 50 chr3 81169866 81169926 -136867232 + (TTCA)n Simple_repeat Simple_repeat 4 60 0 388 113 0 0 chr3 81169926 81169979 -136867179 + AluSg SINE Alu 1 53 -250 1052 61 0 0 chr3 81169980 81170112 -136867046 - L1P2 LINE L1 -356 5798 5667 1455 113 74 13 chr3 81170115 81170345 -136866813 + AluSg SINE Alu 55 298 -12 215 222 0 0 chr3 81170345 81170390 -136866768 - L2 LINE L2 -1 3312 3268 36741 96 8 14 chr3 81170420 81176591 -136860567 - L1PA6 LINE L1 0 6154 11 25 83 0 0 chr3 81176674 81176734 -136860424 + AT_rich Low_complexity Low_complexity 1 60 0 493 142 118 39 chr3 81176880 81177007 -136860151 + MER58C DNA MER1_type 79 215 0 2134 127 3 0 chr3 81177196 81177488 -136859670 - AluSg SINE Alu -17 293 1 1301 262 64 56 chr3 81177680 81178433 -136858725 - L2 LINE L2 0 3313 2550 629 329 80 36 chr3 81179596 81179985 -136857173 - MLT1K LTR MaLR -117 471 66 268 173 12 99 chr3 81180126 81180207 -136856951 - L1ME3A LINE L1 0 6170 6097 4107 140 13 2 chr3 81180659 81181294 -136855864 + MER44D DNA MER2_type 63 704 -1 683 298 77 0 chr3 81181396 81181604 -136855554 + LTR33 LTR ERVL 1 224 -297 1398 98 5 0 chr3 81181834 81182028 -136855130 - L1PA10 LINE L1 0 6168 5974 598 312 26 13 chr3 81182727 81182961 -136854197 + MIR SINE MIR 13 249 -13 312 148 12 99 chr3 81183118 81183199 -136853959 - L1ME3A LINE L1 0 6170 6097 785 229 0 6 chr3 81183328 81183485 -136853673 - FRAM SINE Alu -20 156 1 238 343 106 31 chr3 81183582 81183874 -136853284 + L2 LINE L2 2659 2972 -342 1398 229 33 11 chr3 81184100 81184647 -136852511 - MLT1D LTR MaLR 0 505 19 212 259 0 19 chr3 81185349 81185403 -136851755 + GA-rich Low_complexity Low_complexity 2 54 0 298 398 87 0 chr3 81185440 81185671 -136851487 + MIR SINE MIR 12 262 0 1041 218 27 9 chr3 81187158 81187378 -136849780 - MER58A DNA MER1_type 0 224 1 322 264 35 11 chr3 81187605 81187692 -136849466 + MLT1K LTR MaLR 154 242 -346 1404 267 97 20 chr3 81187728 81188170 -136848988 - LTR16C LTR ERVL -15 476 1 382 269 39 0 chr3 81188231 81188335 -136848823 + MLT1K LTR MaLR 447 554 -34 1013 292 119 28 chr3 81189274 81189671 -136847487 - L2 LINE L2 -3 3310 2868 988 194 66 5 chr3 81189671 81189882 -136847276 - MER58A DNA MER1_type 0 224 1 1013 292 119 28 chr3 81189882 81189919 -136847239 - L2 LINE L2 -445 2868 2836 1534 185 13 34 chr3 81189954 81190252 -136846906 - AluJb SINE Alu -16 296 5 1408 246 99 52 chr3 81190262 81190302 -136846856 - MLT2B1 LTR ERVL 0 520 483 243 0 0 0 chr3 81190302 81190329 -136846829 + (TG)n Simple_repeat Simple_repeat 1 27 0 1408 246 99 52 chr3 81190329 81190771 -136846387 - MLT2B1 LTR ERVL -37 483 15 3194 132 27 39 chr3 81190774 81191347 -136845811 - L1MA8 LINE L1 -4 6287 5731 2290 183 42 2 chr3 81191347 81191757 -136845401 - MSTB LTR MaLR 0 426 1 3194 132 27 39 chr3 81191757 81192227 -136844931 - L1MA8 LINE L1 -560 5731 5257 1707 252 22 15 chr3 81192402 81193284 -136843874 + L1PA10 LINE L1 4 1009 -4866 * 12543 144 51 17 chr3 81193273 81195232 -136841926 + L1PA10 LINE L1 2108 3999 -2484 1965 129 4 4 chr3 81195232 81195511 -136841647 - AluSg SINE Alu -9 301 23 12543 144 51 17 chr3 81195511 81196988 -136840170 + L1PA10 LINE L1 3999 5425 -1058 2552 110 3 11 chr3 81196988 81197353 -136839805 - THE1B LTR MaLR -2 362 1 11795 96 2 3 chr3 81197353 81198934 -136838224 - THE1B-int LTR MaLR 0 1580 1 2563 101 6 11 chr3 81198934 81199300 -136837858 - THE1B LTR MaLR 0 364 1 12543 144 51 17 chr3 81199300 81199847 -136837311 + L1PA10 LINE L1 5424 6474 -9 650 156 35 7 chr3 81199858 81199999 -136837159 - L1 LINE L1 -874 5272 5128 1344 316 79 6 chr3 81200021 81200502 -136836656 - L2 LINE L2 -544 2770 2255 286 308 33 50 chr3 81200985 81201105 -136836053 - MIR3 SINE MIR 0 208 91 566 269 23 54 chr3 81201192 81201426 -136835732 - MIR SINE MIR -13 249 19 984 132 25 0 chr3 81202412 81202571 -136834587 - MER20 DNA MER1_type -3 216 54 3174 141 127 114 chr3 81202572 81202624 -136834534 + L1MC3 LINE L1 6771 6821 -964 2865 7 0 0 chr3 81202624 81202934 -136834224 - AluYa5 SINE Alu -1 310 1 3174 141 127 114 chr3 81202934 81202976 -136834182 + L1MC3 LINE L1 6821 6861 -924 534 31 0 0 chr3 81202976 81203040 -136834118 + (CA)n Simple_repeat Simple_repeat 2 65 0 3174 141 127 114 chr3 81203040 81203264 -136833894 + L1MC3 LINE L1 6861 7081 -704 229 293 0 12 chr3 81203264 81203346 -136833812 + MLT1F1 LTR MaLR 45 125 -442 3174 141 127 114 chr3 81203346 81203637 -136833521 + L1MC3 LINE L1 7081 7367 -418 2188 129 7 0 chr3 81203637 81203947 -136833211 + AluSx SINE Alu 1 312 0 3174 141 127 114 chr3 81203947 81204248 -136832910 + L1MC3 LINE L1 7367 7778 -7 320 212 15 0 chr3 81204249 81204315 -136832843 - MER20 DNA MER1_type -152 67 1 629 274 127 5 chr3 81204319 81204516 -136832642 + MIR SINE MIR 41 261 -1 21 36 0 0 chr3 81205143 81205171 -136831987 + AT_rich Low_complexity Low_complexity 1 28 0 1045 137 0 66 chr3 81205306 81205503 -136831655 + MER1B DNA MER1_type 156 339 0 595 325 121 19 chr3 81205827 81206199 -136830959 - L2 LINE L2 0 3313 2904 199 235 113 122 chr3 81206293 81206408 -136830750 - L2 LINE L2 -1 3312 3199 445 222 0 90 chr3 81206535 81206679 -136830479 + MIR3 SINE MIR 13 143 -65 185 233 0 0 chr3 81206708 81206751 -136830407 + L2 LINE L2 3215 3257 -15 706 292 173 32 chr3 81208444 81208993 -136828165 - L2 LINE L2 -1 3312 2667 282 284 95 10 chr3 81209040 81209164 -136827994 + MIR SINE MIR 34 165 -95 2058 203 90 41 chr3 81209401 81210011 -136827147 - LTR9B LTR ERV1 -2 642 3 2065 124 20 0 chr3 81210024 81210322 -136826836 - AluSx SINE Alu -4 308 5 253 246 0 15 chr3 81211049 81211114 -136826044 - U4 snRNA snRNA -78 67 4 632 160 57 5 chr3 81211774 81211968 -136825190 - Tigger3(Golem) DNA MER2_type -452 2577 2374 2568 69 5 45 chr3 81211969 81212028 -136825130 - L1PB1 LINE L1 0 6151 6091 2104 130 10 3 chr3 81212028 81212329 -136824829 - AluSx SINE Alu -9 303 1 2568 69 5 45 chr3 81212329 81212645 -136824513 - L1PB1 LINE L1 -60 6091 5791 345 125 0 0 chr3 81212660 81212716 -136824442 + (TA)n Simple_repeat Simple_repeat 1 56 0 13236 213 19 14 chr3 81212723 81216942 -136820216 - L1PB1 LINE L1 -372 5779 1550 315 291 9 0 chr3 81216942 81217043 -136820115 - MIR SINE MIR -68 140 60 327 224 56 47 chr3 81217622 81217744 -136819414 + MLT1F1 LTR MaLR 406 551 -16 2058 129 50 17 chr3 81218419 81218776 -136818382 - L1PB3 LINE L1 -4 6150 5782 329 150 64 23 chr3 81218798 81218971 -136818187 + (TA)n Simple_repeat Simple_repeat 1 180 0 344 176 61 0 chr3 81219035 81219341 -136817817 + (TA)n Simple_repeat Simple_repeat 1 324 0 249 155 56 14 chr3 81219341 81219412 -136817746 + (TATATG)n Simple_repeat Simple_repeat 4 77 0 364 219 0 0 chr3 81219412 81219485 -136817673 - L1PB3 LINE L1 -363 5791 5719 25 0 0 0 chr3 81219724 81219749 -136817409 + AT_rich Low_complexity Low_complexity 1 25 0 353 309 16 24 chr3 81221030 81221153 -136816005 + MIR SINE MIR 15 136 -126 189 200 182 18 chr3 81222404 81222459 -136814699 - L2 LINE L2 0 3313 3250 326 239 53 62 chr3 81222471 81222584 -136814574 - MIR SINE MIR -101 161 50 632 303 161 18 chr3 81223782 81224279 -136812879 + L2 LINE L2 2747 3313 0 238 318 108 62 chr3 81224314 81224443 -136812715 + L2 LINE L2 3129 3263 -9 213 65 0 0 chr3 81226556 81226587 -136810571 + (A)n Simple_repeat Simple_repeat 1 31 0 502 210 217 14 chr3 81226738 81226881 -136810277 + MER5A DNA MER1_type 15 186 -3 2271 98 0 0 chr3 81227975 81228289 -136808869 - AluSc SINE Alu 0 314 1 225 0 0 0 chr3 81228358 81228383 -136808775 + (CA)n Simple_repeat Simple_repeat 2 26 0 399 220 176 0 chr3 81228901 81228992 -136808166 - MIR SINE MIR -68 140 34 230 245 0 0 chr3 81229082 81229135 -136808023 - MLT-int LTR MaLR -1038 697 645 2122 212 19 12 chr3 81229136 81229621 -136807537 - MSTD-int LTR MaLR -1246 489 2 1082 207 109 58 chr3 81229623 81229947 -136807211 - MSTD LTR MaLR 0 396 49 1860 116 106 3 chr3 81229947 81230231 -136806927 - AluSq SINE Alu 0 313 1 1082 207 109 58 chr3 81230231 81230283 -136806875 - MSTD LTR MaLR -347 49 1 6680 233 22 7 chr3 81231207 81232977 -136804181 - L1PA13 LINE L1 -1887 4910 3115 5046 220 241 11 chr3 81232980 81234591 -136802567 - L1PA13 LINE L1 -4805 1982 1 315 207 0 0 chr3 81234854 81234912 -136802246 - L2 LINE L2 -1 3312 3255 301 301 29 0 chr3 81234913 81235016 -136802142 - L1MC4 LINE L1 -1323 6719 6614 807 286 33 39 chr3 81235205 81235613 -136801545 - L2 LINE L2 -226 3087 2676 256 363 0 0 chr3 81235611 81235691 -136801467 - L2 LINE L2 -5 3267 3188 * 1259 210 71 18 chr3 81236700 81237136 -136800022 + LTR38B LTR ERV1 97 545 -11 241 294 35 56 chr3 81237196 81237339 -136799819 + Charlie8 DNA MER1_type 145 284 -2133 1207 189 37 0 chr3 81237553 81237797 -136799361 + MER2 DNA MER2_type 77 329 -16 198 91 0 0 chr3 81238213 81238246 -136798912 + (CA)n Simple_repeat Simple_repeat 2 34 0 477 177 23 46 chr3 81238479 81238609 -136798549 - LTR38B LTR ERV1 -483 127 1 7298 40 2 17 chr3 81238840 81240045 -136797113 - L1PA5 LINE L1 -6 6148 4951 1126 44 0 0 chr3 81240575 81240711 -136796447 + L1PA3 LINE L1 6016 6151 -4 319 300 144 44 chr3 81240964 81241082 -136796076 - MER5A DNA MER1_type 0 189 49 2102 150 11 35 chr3 81241082 81241221 -136795937 - THE1B LTR MaLR 0 364 223 2247 92 0 10 chr3 81241221 81241516 -136795642 - AluY SINE Alu -19 292 1 2102 150 11 35 chr3 81241516 81241749 -136795409 - THE1B LTR MaLR -141 223 1 319 300 144 44 chr3 81241749 81241790 -136795368 - MER5A DNA MER1_type -139 50 14 477 260 39 10 chr3 81242374 81242524 -136794634 - MLT1C LTR MaLR 0 467 238 264 224 35 112 chr3 81242590 81242693 -136794465 - MLT1C LTR MaLR -322 183 92 1573 213 59 17 chr3 81242693 81242883 -136794275 - MLT1A2 LTR MaLR 0 374 193 180 0 0 0 chr3 81242883 81242903 -136794255 + (GA)n Simple_repeat Simple_repeat 2 21 0 1573 213 59 17 chr3 81242903 81243069 -136794089 - MLT1A2 LTR MaLR -181 193 3 264 224 35 112 chr3 81243069 81243108 -136794050 - MLT1C LTR MaLR -413 92 52 965 148 33 6 chr3 81243114 81243296 -136793862 - THE1B LTR MaLR 0 364 178 3078 26 3 0 chr3 81243397 81243774 -136793384 - L1PA3 LINE L1 -153 6002 5625 2130 23 4 0 chr3 81243774 81244040 -136793118 + L1P LINE L1 3863 4129 -2017 613 284 11 6 chr3 81244348 81244524 -136792634 - MIR SINE MIR 0 262 86 2318 126 59 35 chr3 81244940 81245137 -136792021 + MSTB1 LTR MaLR 1 192 -240 3369 109 14 2 chr3 81245137 81245642 -136791516 + MER75 DNA T2_type 4 514 0 2318 126 59 35 chr3 81245642 81245866 -136791292 + MSTB1 LTR MaLR 192 432 0 437 259 173 34 chr3 81245868 81246186 -136790972 - L2 LINE L2 -261 3052 2690 294 29 0 0 chr3 81246489 81246524 -136790634 + (TG)n Simple_repeat Simple_repeat 1 35 0 497 224 69 9 chr3 81247764 81247880 -136789278 + MER5A DNA MER1_type 1 123 -66 1685 158 20 68 chr3 81247880 81248235 -136788923 + LTR32 LTR ERVL 15 352 -119 812 162 47 0 chr3 81248284 81248432 -136788726 + LTR32 LTR ERVL 317 471 0 425 171 14 0 chr3 81248432 81248502 -136788656 + MER5A DNA MER1_type 119 189 0 594 266 49 30 chr3 81248896 81249136 -136788022 + MIR SINE MIR 3 249 -13 5246 58 14 3 chr3 81249800 81250453 -136786705 + PABL_A LTR ERV1 1 660 0 337 221 51 0 chr3 81250484 81250580 -136786578 + MIR SINE MIR 47 154 -54 241 172 52 0 chr3 81250685 81250743 -136786415 + (CTCA)n Simple_repeat Simple_repeat 3 63 0 284 314 49 0 chr3 81250780 81250882 -136786276 + MIR SINE MIR 109 215 -47 332 313 0 9 chr3 81250896 81251008 -136786150 - MIR SINE MIR 0 262 152 621 199 123 39 chr3 81251015 81251257 -136785901 - MIR SINE MIR 0 262 7 2338 96 3 0 chr3 81251405 81251708 -136785450 - AluY SINE Alu -7 304 1 380 288 44 50 chr3 81252562 81252722 -136784436 - MIR SINE MIR -98 164 6 1534 184 141 64 chr3 81253676 81253863 -136783295 + MLT1D LTR MaLR 3 174 -331 3538 152 0 0 chr3 81253863 81254390 -136782768 - MER1A DNA MER1_type 0 527 1 1534 184 141 64 chr3 81254390 81254669 -136782489 + MLT1D LTR MaLR 174 505 0 1193 137 9 73 chr3 81254791 81255024 -136782134 - MER20 DNA MER1_type -1 218 1 533 139 50 0 chr3 81255843 81255944 -136781214 + MLT1A1 LTR MaLR 256 361 -4 260 270 67 34 chr3 81256123 81256212 -136780946 + MIR SINE MIR 73 164 -98 683 256 98 29 chr3 81256729 81257006 -136780152 + MLT1K LTR MaLR 265 560 -28 3759 174 113 19 chr3 81258088 81258874 -136778284 + MER21B LTR ERV1 1 860 -3 536 311 73 35 chr3 81260392 81260736 -136776422 - MLT1K LTR MaLR -9 579 223 1368 206 62 21 chr3 81260926 81261299 -136775859 - MLT1B LTR MaLR 0 390 3 946 155 36 64 chr3 81261537 81261756 -136775402 - MER20 DNA MER1_type -6 213 1 212 338 14 0 chr3 81261866 81261937 -136775221 - MER5A DNA MER1_type -57 132 61 885 305 114 12 chr3 81261991 81262599 -136774559 - L2 LINE L2 -1 3312 2627 1613 277 97 24 chr3 81262599 81263231 -136773927 - L2 LINE L2 -1384 1930 1253 927 119 30 8 chr3 81263726 81263860 -136773298 + AluSq/x SINE Alu 1 137 -175 726 165 63 0 chr3 81263960 81264087 -136773071 + AluJb SINE Alu 159 293 -19 234 279 12 47 chr3 81264526 81264612 -136772546 + MARNA DNA Mariner 55 137 -449 351 281 0 0 chr3 81265147 81265261 -136771897 - L1ME LINE L1 -298 5823 5710 331 270 17 78 chr3 81265669 81265784 -136771374 - MIR3 SINE MIR -20 188 81 195 289 0 0 chr3 81267047 81267092 -136770066 - L2 LINE L2 -14 3258 3214 654 211 8 0 chr3 81267137 81267265 -136769893 + MER20 DNA MER1_type 86 214 -5 297 370 8 8 chr3 81267418 81267537 -136769621 + MER5A DNA MER1_type 7 125 -64 239 296 31 31 chr3 81267453 81267551 -136769607 - MER5A DNA MER1_type -30 159 62 * 268 225 0 200 chr3 81267724 81267924 -136769234 - MIR SINE MIR -54 208 49 260 267 219 0 chr3 81271086 81271191 -136765967 + MIR SINE MIR 91 218 -44 256 339 40 16 chr3 81271362 81271486 -136765672 - MIR SINE MIR -134 128 2 228 315 93 28 chr3 81271530 81271638 -136765520 - MIR SINE MIR -76 132 18 550 311 85 43 chr3 81271978 81272377 -136764781 + L2 LINE L2 2804 3219 -94 311 317 112 27 chr3 81272770 81273029 -136764129 - L1 LINE L1 -1810 4336 4056 561 244 68 17 chr3 81273202 81273378 -136763780 + MER58A DNA MER1_type 39 223 -1 1459 235 29 9 chr3 81273637 81273986 -136763172 - MLT1A2 LTR MaLR -4 370 15 7237 97 15 4 chr3 81274611 81276460 -136760698 - L1PA7 LINE L1 -4 6465 4602 11658 121 8 38 chr3 81276460 81278962 -136758196 - L1PA7 LINE L1 -3977 2484 4 3932 177 55 33 chr3 81279144 81280395 -136756763 - L1MB4 LINE L1 -1 6179 4898 762 143 20 18 chr3 81280403 81280645 -136756513 + AluSx SINE Alu 1 297 -13 4110 214 48 90 chr3 81280647 81281701 -136755457 - L1MB4 LINE L1 -1288 4858 3890 2356 72 7 16 chr3 81281701 81282005 -136755153 - AluY SINE Alu -10 301 1 4110 214 48 90 chr3 81282005 81282522 -136754636 - L1MB4 LINE L1 -2256 3890 3353 867 206 63 63 chr3 81282526 81282749 -136754409 - AluJo SINE Alu -8 304 82 1044 258 51 4 chr3 81282750 81283203 -136753955 - L1MB4 LINE L1 -2808 3338 2865 406 306 48 15 chr3 81283209 81283415 -136753743 - L1M4 LINE L1 -2139 4007 3795 845 198 120 0 chr3 81283429 81283687 -136753471 + MER33 DNA MER1_type 9 297 -27 924 283 131 10 chr3 81283721 81284349 -136752809 - L1M4 LINE L1 -2368 3778 3075 401 291 129 29 chr3 81284473 81284683 -136752475 - L1MEd LINE L1 -5887 232 2 1991 123 3 48 chr3 81284959 81285268 -136751890 + AluSx SINE Alu 6 300 -12 922 199 100 0 chr3 81285389 81285668 -136751490 + MER33 DNA MER1_type 1 293 -31 2296 95 7 0 chr3 81285668 81285964 -136751194 + AluY SINE Alu 1 298 -13 237 159 0 0 chr3 81286165 81286209 -136750949 + (TG)n Simple_repeat Simple_repeat 1 44 0 201 74 0 0 chr3 81286226 81286253 -136750905 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1084 141 4 106 chr3 81286276 81286503 -136750655 - AluSx SINE Alu -108 204 1 487 281 27 7 chr3 81286677 81286823 -136750335 + MIR SINE MIR 3 151 -111 469 133 0 0 chr3 81286823 81286898 -136750260 - MADE1 DNA Mariner 0 80 6 2083 137 0 0 chr3 81288018 81288310 -136748848 + AluSx SINE Alu 1 292 -20 1018 191 57 14 chr3 81289070 81289280 -136747878 + MER20 DNA MER1_type 1 219 0 439 259 259 5 chr3 81290952 81291153 -136746005 - MIR SINE MIR -4 258 7 2222 123 125 8 chr3 81293439 81293822 -136743336 + MSTA LTR MaLR 1 428 0 586 329 37 15 chr3 81294077 81294223 -136742935 - MLT1I LTR MaLR -21 388 247 924 225 5 5 chr3 81294223 81294432 -136742726 + MER3 DNA MER1_type 1 209 0 586 329 37 15 chr3 81294432 81294610 -136742548 - MLT1I LTR MaLR -162 247 57 368 317 105 64 chr3 81294694 81295243 -136741915 - L2 LINE L2 -71 3201 2635 1924 211 88 57 chr3 81295266 81295715 -136741443 - MLT1E1 LTR MaLR -10 644 169 1529 195 69 0 chr3 81295715 81295992 -136741166 + AluJo SINE Alu 1 296 -16 1924 211 88 57 chr3 81295992 81296158 -136741000 - MLT1E1 LTR MaLR -485 169 10 5881 112 26 8 chr3 81296158 81296459 -136740699 + L1PA11 LINE L1 5049 5343 -831 1991 107 0 26 chr3 81296459 81296731 -136740427 + AluSg SINE Alu 1 265 -45 5881 112 26 8 chr3 81296731 81297530 -136739628 + L1PA11 LINE L1 5343 6174 0 656 150 0 0 chr3 81297541 81297641 -136739517 + AluSg/x SINE Alu 196 295 -17 503 273 17 23 chr3 81298014 81298186 -136738972 + MIR SINE MIR 92 262 0 665 277 87 0 chr3 81299245 81299451 -136737707 + MER58A DNA MER1_type 1 224 0 1364 209 29 4 chr3 81299522 81299795 -136737363 + AluJo SINE Alu 3 282 -30 1033 220 63 23 chr3 81299818 81300246 -136736912 + L1MB7 LINE L1 2823 3267 -2879 7597 164 29 4 chr3 81300312 81301844 -136735314 - L1 LINE L1 -981 5165 3595 498 160 85 0 chr3 81301843 81301949 -136735209 - L1MA6 LINE L1 -614 5686 5572 * 2878 154 43 27 chr3 81301959 81302045 -136735113 + L1MA6 LINE L1 5693 5776 -524 210 37 0 0 chr3 81302045 81302072 -136735086 + (TG)n Simple_repeat Simple_repeat 2 28 0 2878 154 43 27 chr3 81302072 81302583 -136734575 + L1MA6 LINE L1 5776 6300 0 3971 175 36 14 chr3 81302585 81303686 -136733472 + L1MB7 LINE L1 5045 6166 -18 930 227 64 78 chr3 81303841 81304123 -136733035 + L1MD1 LINE L1 12 289 -6251 * 1361 233 76 29 chr3 81304108 81304385 -136732773 + L1MD1 LINE L1 3902 4165 -2588 2018 124 0 20 chr3 81304385 81304684 -136732474 + AluSx SINE Alu 17 309 -3 1361 233 76 29 chr3 81304684 81306500 -136730658 + L1MD1 LINE L1 4165 6271 -482 573 229 61 78 chr3 81306503 81306796 -136730362 + L1MD1 LINE L1 6342 6629 -7 217 280 47 51 chr3 81307441 81307562 -136729596 + MIR SINE MIR 20 142 -66 685 213 69 40 chr3 81308077 81308279 -136728879 - MER74B LTR ERVL -67 555 348 180 0 0 0 chr3 81308295 81308315 -136728843 + (A)n Simple_repeat Simple_repeat 1 20 0 1080 213 16 8 chr3 81308320 81308569 -136728589 - MER82 DNA MER2_type -377 276 26 807 193 11 17 chr3 81308584 81308760 -136728398 + L1MC/D LINE L1 5495 5669 -690 1796 225 68 20 chr3 81308781 81309452 -136727706 - L1MDb LINE L1 -4920 1620 940 645 316 33 35 chr3 81309842 81310209 -136726949 - L1MDb LINE L1 -6116 424 59 235 303 97 13 chr3 81310260 81310415 -136726743 - L1ME LINE L1 -370 5751 5584 22217 175 32 18 chr3 81310589 81316967 -136720191 - L1PA11 LINE L1 -3 6486 10 226 314 75 0 chr3 81316977 81317165 -136719993 - L1ME LINE L1 -818 5328 5127 192 143 0 0 chr3 81318904 81318946 -136718212 + (TA)n Simple_repeat Simple_repeat 2 43 0 209 263 0 18 chr3 81320900 81320957 -136716201 + L2 LINE L2 3183 3238 -75 330 250 102 46 chr3 81321484 81321546 -136715612 - L2 LINE L2 -58 3255 3198 1492 214 27 18 chr3 81321546 81321883 -136715275 - MER58B DNA MER1_type 0 341 2 330 250 102 46 chr3 81321883 81322036 -136715122 - L2 LINE L2 -115 3198 3028 446 216 40 32 chr3 81322114 81322239 -136714919 - L2 LINE L2 -794 2520 2395 394 277 106 21 chr3 81322245 81322386 -136714772 + MIR SINE MIR 109 261 -1 329 295 25 57 chr3 81322988 81323137 -136714021 + MER5A DNA MER1_type 2 147 -31 1085 168 59 5 chr3 81323380 81323583 -136713575 - MER20 DNA MER1_type -4 215 2 23 54 0 0 chr3 81324672 81324709 -136712449 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr3 81325199 81325228 -136711930 + AT_rich Low_complexity Low_complexity 1 29 0 180 305 8 78 chr3 81325798 81325926 -136711232 - L2 LINE L2 -279 2993 2875 3164 138 68 7 chr3 81327010 81327603 -136709555 + L1PB4 LINE L1 5471 6099 -57 326 303 143 30 chr3 81327658 81327889 -136709269 + MIR SINE MIR 4 260 -2 4220 179 95 12 chr3 81328094 81329126 -136708032 - L1 LINE L1 -753 5393 4276 2078 187 81 21 chr3 81329113 81329152 -136708006 + L1 LINE L1 3540 3575 -2571 * 2204 108 10 3 chr3 81329152 81329458 -136707700 + AluY SINE Alu 1 308 -3 2078 187 81 21 chr3 81329458 81330033 -136707125 + L1 LINE L1 3575 4241 -1905 371 295 13 110 chr3 81330129 81330219 -136706939 - MIR SINE MIR -26 236 139 738 122 54 34 chr3 81330219 81330367 -136706791 + L1PB1 LINE L1 6000 6150 -1 371 295 13 110 chr3 81330367 81330513 -136706645 - MIR SINE MIR -123 139 23 2229 129 0 0 chr3 81330932 81331234 -136705924 + AluSx SINE Alu 1 302 -10 23 0 0 0 chr3 81332394 81332417 -136704741 + AT_rich Low_complexity Low_complexity 1 23 0 1621 211 105 69 chr3 81333490 81334025 -136703133 + MLT2B3 LTR ERVL 1 554 0 876 216 101 0 chr3 81334490 81334689 -136702469 - MER20 DNA MER1_type 0 219 1 2449 107 16 14 chr3 81334912 81335275 -136701883 + THE1B LTR MaLR 1 364 0 203 304 96 48 chr3 81335731 81335856 -136701302 + L2 LINE L2 3137 3267 -5 2237 80 0 13 chr3 81336099 81336399 -136700759 + AluSc SINE Alu 1 296 -13 323 321 85 0 chr3 81337275 81337381 -136699777 - L2 LINE L2 -5 3267 3153 360 160 0 53 chr3 81337474 81337549 -136699609 - MER33 DNA MER1_type -247 77 7 865 201 0 0 chr3 81337789 81337933 -136699225 + FRAM SINE Alu 1 144 -32 245 175 35 0 chr3 81337954 81338011 -136699147 + L1ME LINE L1 5761 5819 -302 410 276 169 35 chr3 81338820 81339081 -136698077 - L2 LINE L2 -481 2833 2538 974 256 67 16 chr3 81339235 81339551 -136697607 + MER46C DNA MER2_type 2 333 -5 813 218 113 116 chr3 81340856 81340973 -136696185 + MLT1E2 LTR MaLR 1 117 -509 2261 133 0 0 chr3 81340973 81341274 -136695884 - AluSx SINE Alu -11 301 1 813 218 113 116 chr3 81341274 81341626 -136695532 + MLT1E2 LTR MaLR 117 574 -52 3206 185 61 14 chr3 81341657 81342423 -136694735 - L1MC4 LINE L1 -69 7973 7172 749 271 86 43 chr3 81342430 81342842 -136694316 - L1MC4 LINE L1 -889 7004 6470 585 278 127 4 chr3 81343140 81343399 -136693759 + MLT1F LTR MaLR 1 291 -251 1151 216 188 36 chr3 81343424 81343845 -136693313 + MLT1F LTR MaLR 58 542 0 1506 196 42 50 chr3 81344706 81345083 -136692075 - MLT1A2 LTR MaLR 0 374 1 406 301 50 50 chr3 81345354 81345375 -136691783 - MIR SINE MIR -13 249 229 518 235 71 24 chr3 81345375 81345545 -136691613 + MER104 DNA MER2_type 3 180 0 406 301 50 50 chr3 81345545 81345722 -136691436 - MIR SINE MIR -32 230 51 2561 94 5 32 chr3 81345921 81346295 -136690863 + THE1B LTR MaLR 1 364 0 2276 186 11 60 chr3 81346476 81347023 -136690135 - MLT2B1 LTR ERVL 0 520 1 205 288 0 0 chr3 81347553 81347612 -136689546 - L2 LINE L2 -4 3268 3210 275 207 98 37 chr3 81348523 81348605 -136688553 - L2 LINE L2 -13 3259 3173 184 299 71 63 chr3 81348903 81349030 -136688128 - L2 LINE L2 -4 3309 3182 1445 262 178 30 chr3 81349151 81349796 -136687362 - L2 LINE L2 -426 2888 2148 430 331 77 28 chr3 81349819 81350157 -136687001 - L2 LINE L2 -1406 1908 1506 1810 152 4 0 chr3 81350395 81350671 -136686487 + AluSx SINE Alu 1 277 -35 225 0 0 0 chr3 81351508 81351533 -136685625 + (CA)n Simple_repeat Simple_repeat 2 26 0 1122 193 46 95 chr3 81351681 81352091 -136685067 + MLT1B LTR MaLR 1 390 0 405 268 40 81 chr3 81353255 81353453 -136683705 + HAL1 LINE L1 4 193 -2314 310 224 48 109 chr3 81353645 81353792 -136683366 + HAL1 LINE L1 860 997 -1510 180 208 125 0 chr3 81353810 81353858 -136683300 - MIR SINE MIR -21 241 188 618 279 95 63 chr3 81354218 81354702 -136682456 + HAL1 LINE L1 1154 1664 -843 784 92 0 0 chr3 81354702 81354811 -136682347 - L1PB3 LINE L1 0 6154 6046 618 279 95 63 chr3 81354811 81354957 -136682201 + HAL1 LINE L1 1664 1804 -703 21 0 0 0 chr3 81355215 81355236 -136681922 + AT_rich Low_complexity Low_complexity 1 21 0 213 181 0 60 chr3 81355405 81355488 -136681670 + (CATATA)n Simple_repeat Simple_repeat 3 80 0 4222 132 40 6 chr3 81355707 81356660 -136680498 + L1MA6 LINE L1 5095 6080 -220 2048 124 119 8 chr3 81356660 81357136 -136680022 + MER1A DNA MER1_type 1 529 0 919 171 0 6 chr3 81357240 81357410 -136679748 + L1MA6 LINE L1 6132 6300 0 195 349 0 0 chr3 81357493 81357556 -136679602 + L2 LINE L2 3187 3249 -64 201 171 0 0 chr3 81358157 81358192 -136678966 + A-rich Low_complexity Low_complexity 6 40 0 389 265 39 0 chr3 81358227 81358329 -136678829 + Charlie2 DNA MER1_type 6 111 -2751 3572 162 48 50 chr3 81358441 81359227 -136677931 + LTR1 LTR ERV1 1 785 0 1932 173 62 16 chr3 81359946 81360316 -136676842 + MLT2B3 LTR ERVL 1 387 -167 337 173 12 37 chr3 81360305 81360386 -136676772 + MER21B LTR ERV1 126 204 -659 * 840 114 87 0 chr3 81360410 81360521 -136676637 + MLT2B3 LTR ERVL 392 521 -33 360 94 0 0 chr3 81360521 81360574 -136676584 + (TCCA)n Simple_repeat Simple_repeat 2 54 0 840 114 87 0 chr3 81360574 81360611 -136676547 + MLT2B3 LTR ERVL 521 553 -1 514 232 128 18 chr3 81360829 81360993 -136676165 - MER21B LTR ERV1 -216 647 466 1383 272 126 37 chr3 81361979 81362897 -136674261 + L2 LINE L2 2258 3312 -1 487 273 16 0 chr3 81364032 81364153 -136673005 - L2 LINE L2 -3 3310 3188 1132 215 5 14 chr3 81364437 81364660 -136672498 + MER58A DNA MER1_type 1 221 -3 360 228 33 11 chr3 81364683 81364775 -136672383 + MER5A DNA MER1_type 13 106 -83 420 261 7 78 chr3 81364953 81365106 -136672052 - MER5A DNA MER1_type -5 184 43 21 0 0 0 chr3 81365136 81365157 -136672001 + AT_rich Low_complexity Low_complexity 1 21 0 2420 54 0 0 chr3 81365288 81365605 -136671553 - L1PA4 LINE L1 -65 6090 5774 24428 115 16 14 chr3 81365907 81369895 -136667263 + L1PA7 LINE L1 11 4005 -2141 2140 81 0 3 chr3 81369896 81370206 -136666952 - L1P LINE L1 -1221 4925 4617 9965 74 5 0 chr3 81370222 81372340 -136664818 + L1PA7 LINE L1 4021 6149 -5 256 284 93 71 chr3 81372591 81372640 -136664518 - MIR SINE MIR -57 205 159 2310 80 3 3 chr3 81372640 81372939 -136664219 - AluY SINE Alu -12 299 1 256 284 93 71 chr3 81372939 81373072 -136664086 - MIR SINE MIR -103 159 19 751 56 28 0 chr3 81373733 81373840 -136663318 - L1PA10 LINE L1 -441 5727 5618 2897 103 21 2 chr3 81373840 81374259 -136662899 + L1PA10 LINE L1 5731 6166 -2 247 316 58 58 chr3 81374369 81374508 -136662650 + MIR SINE MIR 10 148 -114 2106 194 47 23 chr3 81374563 81375048 -136662110 + MLT1D LTR MaLR 1 497 -8 1398 165 59 108 chr3 81375183 81375424 -136661734 - Charlie4a DNA MER1_type -1455 506 300 2767 83 3 3 chr3 81375424 81375791 -136661367 + L1PA10 LINE L1 5796 6167 -1 1398 165 59 108 chr3 81375791 81376041 -136661117 - Charlie4a DNA MER1_type -1661 300 39 1598 203 7 10 chr3 81376459 81376764 -136660394 + AluJb SINE Alu 1 304 -8 1563 27 0 6 chr3 81377618 81377801 -136659357 + AluY SINE Alu 35 216 -95 1013 171 28 28 chr3 81377911 81378092 -136659066 - AluJb SINE Alu -131 181 1 4275 148 63 11 chr3 81378092 81378973 -136658185 - L1MA8 LINE L1 -166 6125 5196 2460 173 52 6 chr3 81378973 81379140 -136658018 + L1 LINE L1 3987 4145 -2001 13972 130 40 11 chr3 81379140 81379189 -136657969 + Tigger1 DNA MER2_type 1 47 -2371 1757 174 10 13 chr3 81379189 81379500 -136657658 - AluSx SINE Alu -2 310 1 13972 130 40 11 chr3 81379500 81381799 -136655359 + Tigger1 DNA MER2_type 47 2418 0 2460 173 52 6 chr3 81381799 81382168 -136654990 + L1 LINE L1 4145 4548 -1598 * 25540 38 4 0 chr3 81382163 81386231 -136650927 - L1PA4 LINE L1 -1 6154 2071 2034 121 24 0 chr3 81386906 81387195 -136649963 + AluSx SINE Alu 1 296 -16 291 273 87 50 chr3 81387241 81387402 -136649756 - MIR SINE MIR -50 212 46 727 167 81 14 chr3 81387649 81387870 -136649288 + Charlie5 DNA MER1_type 2295 2530 -82 1530 152 50 57 chr3 81388493 81388848 -136648310 + AluSx SINE Alu 1 353 0 609 337 87 40 chr3 81388940 81389287 -136647871 + L2 LINE L2 2910 3272 0 367 257 69 20 chr3 81389920 81390021 -136647137 - MIR SINE MIR -63 145 40 723 244 34 19 chr3 81390038 81390243 -136646915 - MER3 DNA MER1_type 0 209 2 261 286 92 0 chr3 81390402 81390495 -136646663 + MIR3 SINE MIR 92 174 -34 714 263 91 13 chr3 81390575 81390807 -136646351 - MIR SINE MIR -12 250 1 1862 181 0 0 chr3 81390911 81391204 -136645954 - AluJb SINE Alu -19 293 1 1550 211 50 40 chr3 81391783 81392184 -136644974 + Charlie4a DNA MER1_type 3 411 -1550 662 137 0 0 chr3 81392184 81392286 -136644872 - L1PA15 LINE L1 -6 6159 6058 1550 211 50 40 chr3 81392286 81392382 -136644776 + Charlie4a DNA MER1_type 411 505 -3 590 290 161 24 chr3 81393586 81393687 -136643471 - L2 LINE L2 0 3313 3227 2124 88 9 50 chr3 81393687 81394004 -136643154 - AluSc SINE Alu -5 304 1 590 290 161 24 chr3 81394004 81394243 -136642915 - L2 LINE L2 -86 3227 2926 561 291 157 14 chr3 81394937 81395147 -136642011 - MIR SINE MIR -9 253 14 1994 149 0 7 chr3 81395284 81395593 -136641565 + AluJb SINE Alu 1 307 -5 651 353 66 28 chr3 81396321 81396743 -136640415 + L3 LINE CR1 151 588 -989 407 266 18 9 chr3 81396763 81396872 -136640286 - MIR SINE MIR -139 123 14 973 337 64 52 chr3 81396901 81397458 -136639700 + L3 LINE CR1 594 1164 -413 720 264 40 0 chr3 81397458 81397659 -136639499 + MER3 DNA MER1_type 1 209 0 973 337 64 52 chr3 81397659 81397849 -136639309 + L3 LINE CR1 1164 1350 -227 422 241 71 27 chr3 81397896 81398008 -136639150 + L2 LINE L2 3156 3272 0 343 284 53 71 chr3 81398033 81398202 -136638956 + L3 LINE CR1 1394 1559 -18 285 235 108 20 chr3 81398235 81398269 -136638889 + MIR SINE MIR 48 78 -184 2054 254 47 21 chr3 81398269 81398847 -136638311 - MLT1E LTR MaLR 0 593 1 285 235 108 20 chr3 81398847 81398914 -136638244 + MIR SINE MIR 78 158 -104 1103 218 5 14 chr3 81399234 81399454 -136637704 + MER58A DNA MER1_type 4 221 -3 360 228 33 11 chr3 81399477 81399569 -136637589 + MER5A DNA MER1_type 13 106 -83 459 282 11 64 chr3 81399747 81399935 -136637223 - MER5A DNA MER1_type -5 184 7 1299 80 38 115 chr3 81400139 81400377 -136636781 - L1MA8 LINE L1 -1 6290 6076 502 101 13 0 chr3 81400377 81400456 -136636702 - MADE1 DNA Mariner 0 80 1 1299 80 38 115 chr3 81400456 81400505 -136636653 - L1MA8 LINE L1 -215 6076 6025 673 205 125 93 chr3 81400749 81400808 -136636350 - L2 LINE L2 -2 3311 3255 867 265 14 0 chr3 81400808 81401019 -136636139 - MER58C DNA MER1_type 0 215 2 673 205 125 93 chr3 81401019 81401072 -136636086 - L2 LINE L2 -58 3255 3205 2107 131 0 3 chr3 81401072 81401378 -136635780 + AluJb SINE Alu 2 306 -6 673 205 125 93 chr3 81401378 81401576 -136635582 - L2 LINE L2 -108 3205 2990 192 158 0 0 chr3 81402443 81402481 -136634677 + (ATTG)n Simple_repeat Simple_repeat 2 39 0 1473 197 0 31 chr3 81402484 81402773 -136634385 - AluJb SINE Alu -32 280 1 2621 11 0 0 chr3 81403321 81403608 -136633550 + AluYa5 SINE Alu 24 310 -1 29285 103 14 21 chr3 81403817 81409971 -136627187 - L1PA7 LINE L1 -1 6468 253 502 272 219 0 chr3 81410288 81410457 -136626701 - MIR SINE MIR -53 209 4 1224 251 91 46 chr3 81411473 81411991 -136625167 + MLT1H1 LTR MaLR 1 541 -14 557 124 18 26 chr3 81412164 81412277 -136624881 - L1MA9 LINE L1 0 6312 6201 436 269 69 7 chr3 81412519 81412664 -136624494 - L2 LINE L2 -1 3312 3159 2089 125 37 7 chr3 81412681 81413243 -136623915 - L1PA10 LINE L1 -547 5621 5050 3756 78 40 0 chr3 81413243 81413746 -136623412 + L1PA10 LINE L1 5637 6159 -9 576 264 29 6 chr3 81414159 81414333 -136622825 - MER5A DNA MER1_type -10 179 2 296 281 97 26 chr3 81415972 81416086 -136621072 + MIR SINE MIR 4 125 -137 571 308 186 21 chr3 81416175 81416688 -136620470 - L2 LINE L2 0 3313 2715 349 279 34 43 chr3 81417688 81417896 -136619262 + L1MC4a LINE L1 5704 5909 -1899 214 310 88 35 chr3 81419130 81419301 -136617857 + MIR SINE MIR 56 235 -27 695 239 45 73 chr3 81420091 81420130 -136617028 - MIR SINE MIR -18 244 205 306 0 0 0 chr3 81420130 81420164 -136616994 + (TG)n Simple_repeat Simple_repeat 2 35 0 695 239 45 73 chr3 81420164 81420371 -136616787 - MIR SINE MIR -57 205 5 334 243 50 57 chr3 81420636 81420776 -136616382 - Charlie8 DNA MER1_type -2278 139 1 342 327 15 59 chr3 81422495 81422697 -136614461 + L1ME LINE L1 5522 5714 -450 374 221 11 11 chr3 81423802 81423897 -136613261 - Charlie4 DNA MER1_type -45 1916 1822 234 0 0 0 chr3 81424408 81424434 -136612724 + (CA)n Simple_repeat Simple_repeat 1 26 0 1629 171 0 37 chr3 81424504 81424825 -136612333 + AluJo SINE Alu 1 309 -3 2787 209 42 40 chr3 81425491 81426681 -136610477 + L1ME1 LINE L1 4974 6159 -7 447 133 89 0 chr3 81426719 81426809 -136610349 + L1M3f LINE L1 18 115 -5213 762 207 6 45 chr3 81426809 81426862 -136610296 - FAM SINE Alu -139 46 128 2373 137 6 6 chr3 81426862 81427226 -136609932 + THE1B LTR MaLR 1 364 0 762 207 6 45 chr3 81427226 81427351 -136609807 - FAM SINE Alu -56 129 1 4132 249 35 21 chr3 81427356 81428843 -136608315 + L1M3f LINE L1 110 1611 -4067 10041 211 45 15 chr3 81428968 81433368 -136603790 + L1MA4 LINE L1 473 5035 -1293 3488 50 7 7 chr3 81433370 81433812 -136603346 - L1PA8 LINE L1 -1 6171 5730 2173 50 0 0 chr3 81433813 81434092 -136603066 + L1PA8 LINE L1 5447 5725 -447 * 5783 156 22 6 chr3 81434078 81435503 -136601655 + L1MA4 LINE L1 5022 6477 -5 577 297 36 5 chr3 81435514 81435709 -136601449 - MIR SINE MIR -28 234 34 500 84 12 0 chr3 81436097 81436180 -136600978 + (CA)n Simple_repeat Simple_repeat 2 85 0 225 0 0 0 chr3 81437586 81437611 -136599547 + (CA)n Simple_repeat Simple_repeat 2 26 0 255 301 41 62 chr3 81438057 81438203 -136598955 - MER5B DNA MER1_type 0 178 36 203 263 0 26 chr3 81438721 81438797 -136598361 + GA-rich Low_complexity Low_complexity 2 75 0 324 106 0 0 chr3 81438905 81438952 -136598206 + Charlie5 DNA MER1_type 18 64 -2548 619 169 23 0 chr3 81438952 81439082 -136598076 + Charlie5 DNA MER1_type 2426 2558 -54 488 267 61 36 chr3 81439640 81439805 -136597353 - MIR SINE MIR -4 258 90 370 149 45 0 chr3 81439812 81439879 -136597279 + LTR40c LTR ERVL 302 371 -94 2134 111 0 0 chr3 81439880 81440168 -136596990 + AluSx SINE Alu 1 288 -24 783 122 0 8 chr3 81440191 81440314 -136596844 + LTR40b LTR ERVL 341 462 0 573 295 79 11 chr3 81440657 81440847 -136596311 - MIR SINE MIR -3 259 57 246 32 0 0 chr3 81442860 81442891 -136594267 + (CA)n Simple_repeat Simple_repeat 2 32 0 236 157 39 0 chr3 81444963 81445014 -136592144 + MLT1E3 LTR MaLR 569 621 -3 466 211 111 86 chr3 81445067 81445347 -136591811 + MER102b DNA MER1_type 10 296 -45 413 154 128 0 chr3 81445771 81445849 -136591309 + 5S rRNA rRNA 2 89 -32 * 1452 215 108 56 chr3 81445847 81446368 -136590790 - MLT1E1 LTR MaLR -43 611 64 827 199 12 6 chr3 81446590 81446744 -136590414 + FRAM SINE Alu 1 158 -154 249 57 0 0 chr3 81446744 81446779 -136590379 + (CAGG)n Simple_repeat Simple_repeat 2 36 0 827 199 12 6 chr3 81446779 81446795 -136590363 + FRAM SINE Alu 158 172 -4 271 299 11 0 chr3 81446800 81446887 -136590271 + L1ME LINE L1 5739 5826 -295 440 263 87 53 chr3 81446963 81447320 -136589838 + LTR33A LTR ERVL 2 370 -153 492 137 105 0 chr3 81449575 81449670 -136587488 - MSTD LTR MaLR 0 396 292 292 143 71 0 chr3 81449673 81449729 -136587429 - MSTC LTR MaLR -368 60 1 5449 236 98 34 chr3 81449729 81451358 -136585800 - MSTD-int LTR MaLR 0 1735 2 1552 213 47 21 chr3 81451360 81451741 -136585417 - MSTD LTR MaLR 0 396 6 992 190 22 183 chr3 81452480 81453147 -136584011 + L1MC4 LINE L1 7480 8039 -3 198 281 18 0 chr3 81453309 81453366 -136583792 - L2 LINE L2 -5 3267 3210 393 269 32 0 chr3 81453415 81453508 -136583650 - MIR SINE MIR -143 119 24 687 224 6 0 chr3 81455232 81455393 -136581765 + L1PB4 LINE L1 5995 6156 0 274 296 78 0 chr3 81456158 81456273 -136580885 + L2 LINE L2 3190 3313 0 336 300 0 0 chr3 81456308 81456398 -136580760 + MIR3 SINE MIR 100 189 -19 1807 154 31 3 chr3 81456962 81457254 -136579904 - AluJb SINE Alu -12 300 1 1961 128 3 17 chr3 81457644 81457824 -136579334 - AluSq SINE Alu 0 314 138 2085 87 72 0 chr3 81457824 81458101 -136579057 - AluSx SINE Alu -15 297 1 1961 128 3 17 chr3 81458101 81458238 -136578920 - AluSq SINE Alu -176 138 1 981 280 75 48 chr3 81458487 81459207 -136577951 - L2 LINE L2 -4 3309 2570 228 254 56 14 chr3 81459223 81459294 -136577864 + L2 LINE L2 3199 3272 0 268 307 26 20 chr3 81460121 81460274 -136576884 + L1 LINE L1 4904 5057 -1089 25 0 0 0 chr3 81460389 81460414 -136576744 + AT_rich Low_complexity Low_complexity 1 25 0 288 250 97 21 chr3 81460438 81460582 -136576576 + L1MCc LINE L1 22 176 -6247 409 162 76 86 chr3 81460693 81460798 -136576360 + L1MCc LINE L1 335 438 -5985 1212 261 94 22 chr3 81460931 81461483 -136575675 + L1MCc LINE L1 785 1384 -5038 1739 293 44 6 chr3 81461567 81462480 -136574678 + L1MCc LINE L1 2800 3741 -3200 568 265 177 19 chr3 81462486 81462859 -136574299 + L1MC/D LINE L1 1633 2064 -4332 748 225 10 38 chr3 81462860 81463069 -136574089 + MER3 DNA MER1_type 2 204 -5 3649 249 65 18 chr3 81463071 81463231 -136573927 + L1MC/D LINE L1 2054 2205 -4010 1597 187 84 0 chr3 81463231 81463552 -136573606 + MER7A DNA MER2_type 1 346 0 3649 249 65 18 chr3 81463552 81463983 -136573175 + L1MC/D LINE L1 2205 2615 -3600 2227 110 47 49 chr3 81463983 81464348 -136572810 + THE1B LTR MaLR 1 364 0 11476 94 15 1 chr3 81464349 81465906 -136571252 + THE1B-int LTR MaLR 2 1580 0 1985 133 53 44 chr3 81465906 81466267 -136570891 + THE1B LTR MaLR 1 364 0 3649 249 65 18 chr3 81466267 81467397 -136569761 + L1MC/D LINE L1 2614 3824 -2391 2316 169 31 18 chr3 81467400 81468412 -136568746 + L1MB5 LINE L1 5014 6136 -38 1489 227 112 9 chr3 81468430 81468893 -136568265 + L1MC/D LINE L1 3807 4317 -1898 583 122 35 0 chr3 81469199 81469314 -136567844 + GA-rich Low_complexity Low_complexity 4 122 0 292 244 0 0 chr3 81469603 81469689 -136567469 + L1MC/D LINE L1 5421 5506 -2371 4922 98 119 128 chr3 81469804 81471366 -136565792 - pTR5 LTR ERV1 0 2438 743 674 255 37 0 chr3 81471400 81471588 -136565570 + L1MC/D LINE L1 5669 5863 -2014 565 96 0 0 chr3 81471720 81471803 -136565355 + L1PA10 LINE L1 6086 6168 0 834 200 0 76 chr3 81471845 81472030 -136565128 + FAM SINE Alu 1 171 -4 288 318 0 0 chr3 81472142 81472230 -136564928 + MIR SINE MIR 113 200 -62 271 339 88 0 chr3 81473376 81473547 -136563611 + Charlie8 DNA MER1_type 11 196 -2221 779 266 79 4 chr3 81473737 81473966 -136563192 + L2 LINE L2 2831 3076 -237 783 157 10 71 chr3 81473969 81474143 -136563015 - L1 LINE L1 -968 5178 5016 1598 171 38 21 chr3 81474143 81474306 -136562852 - AluJo SINE Alu -20 292 120 216 0 0 0 chr3 81474306 81474330 -136562828 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1598 171 38 21 chr3 81474330 81474453 -136562705 - AluJo SINE Alu -192 120 1 783 157 10 71 chr3 81474453 81474476 -136562682 - L1 LINE L1 -1130 5016 4993 2370 81 7 0 chr3 81474477 81474773 -136562385 + AluY SINE Alu 1 298 -13 313 276 55 16 chr3 81474781 81474908 -136562250 - L1 LINE L1 -1259 4887 4756 1207 123 0 15 chr3 81474909 81475104 -136562054 + L1MA9 LINE L1 6116 6307 -5 500 261 108 25 chr3 81475108 81475311 -136561847 + L2 LINE L2 3093 3312 -1 1233 251 64 24 chr3 81475399 81476024 -136561134 + L1MCa LINE L1 1776 2483 -3943 1341 211 144 22 chr3 81476686 81477102 -136560056 + MLT1C LTR MaLR 1 467 0 310 302 23 0 chr3 81477937 81478023 -136559135 - MER5B DNA MER1_type -86 92 5 354 23 0 0 chr3 81480527 81480570 -136556588 + (CA)n Simple_repeat Simple_repeat 2 44 0 543 294 72 74 chr3 81480792 81481224 -136555934 + MLT1K LTR MaLR 5 435 -153 2689 112 47 2 chr3 81481245 81481672 -136555486 - L1M1 LINE L1 -5440 2125 1680 4244 170 35 30 chr3 81482015 81482857 -136554301 + L1MB3 LINE L1 4986 5839 -344 2283 109 0 0 chr3 81482857 81483159 -136553999 + AluY SINE Alu 1 302 -9 4244 170 35 30 chr3 81483159 81483499 -136553659 + L1MB3 LINE L1 5839 6176 -7 2793 179 20 51 chr3 81483523 81484170 -136552988 + Looper DNA T2_type 768 1394 -164 405 128 116 0 chr3 81484170 81484256 -136552902 - L1MB7 LINE L1 -7 6177 6082 2793 179 20 51 chr3 81484256 81484300 -136552858 + Looper DNA T2_type 1394 1438 -120 188 180 40 60 chr3 81484550 81484600 -136552558 - L2 LINE L2 -541 2773 2725 1122 219 63 42 chr3 81484611 81484696 -136552462 + MLT1D LTR MaLR 1 83 -422 1803 171 67 6 chr3 81484696 81485040 -136552118 - MLT1A1 LTR MaLR 0 365 1 1122 219 63 42 chr3 81485040 81485287 -136551871 + MLT1D LTR MaLR 83 340 -165 * 3430 136 16 0 chr3 81485281 81485797 -136551361 + MER1A DNA MER1_type 6 529 0 517 174 52 2 chr3 81485797 81485921 -136551237 + MLT1D LTR MaLR 324 505 0 231 336 18 9 chr3 81486010 81486123 -136551035 - MIR3 SINE MIR -3 205 92 471 271 101 20 chr3 81487164 81487363 -136549795 - MER58C DNA MER1_type 0 215 1 2140 113 58 0 chr3 81489320 81489613 -136547545 - AluSx SINE Alu -2 310 1 7654 34 0 1 chr3 81489797 81491491 -136545667 + L1PA4 LINE L1 4463 6152 -3 29 0 0 0 chr3 81491521 81491550 -136545608 + AT_rich Low_complexity Low_complexity 1 29 0 273 233 58 97 chr3 81492085 81492111 -136545047 - L2 LINE L2 -3 3310 3285 1208 210 88 37 chr3 81492111 81492463 -136544695 + MLT1A2 LTR MaLR 5 374 0 273 233 58 97 chr3 81492463 81492539 -136544619 - L2 LINE L2 -28 3285 3212 1483 268 99 23 chr3 81492924 81493652 -136543506 + MER20B DNA MER1_type 1 783 -1 1053 293 34 6 chr3 81494261 81494585 -136542573 - MLT1I LTR MaLR -5 404 72 2981 151 28 55 chr3 81495028 81495718 -136541440 - L1 LINE L1 -942 5204 4534 258 30 0 0 chr3 81495716 81495749 -136541409 - L1P LINE L1 -6107 39 7 * 12553 75 1 1 chr3 81495744 81497431 -136539727 + L1P LINE L1 33 1718 -4428 2646 46 3 0 chr3 81549671 81549978 -136487180 + AluY SINE Alu 1 308 -3 374 233 4 42 chr3 81550092 81550188 -136486970 - MIR SINE MIR -42 166 72 300 239 303 9 chr3 81550228 81550337 -136486821 + MER5A DNA MER1_type 44 184 -5 192 77 0 0 chr3 81550785 81550811 -136486347 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 857 293 22 29 chr3 81550816 81551127 -136486031 - L2 LINE L2 -23 3290 2982 2822 132 56 9 chr3 81551349 81551795 -136485363 + MLT1C LTR MaLR 1 467 0 784 246 148 45 chr3 81552007 81552337 -136484821 - L2 LINE L2 -6 3307 2944 324 287 56 74 chr3 81552810 81553060 -136484098 - MIR SINE MIR 0 262 24 1308 180 0 0 chr3 81553120 81553331 -136483827 + L1PB4 LINE L1 5942 6152 -4 2463 152 41 55 chr3 81554436 81554725 -136482433 + L1MB3 LINE L1 5676 5967 -216 1799 162 7 14 chr3 81554725 81555015 -136482143 + AluJo SINE Alu 12 299 -13 2463 152 41 55 chr3 81555015 81555043 -136482115 + L1MB3 LINE L1 5967 5994 -189 1635 99 49 18 chr3 81555043 81555266 -136481892 + MER30 DNA MER1_type 1 230 0 2463 152 41 55 chr3 81555266 81555460 -136481698 + L1MB3 LINE L1 5994 6181 -2 22 0 0 0 chr3 81555585 81555607 -136481551 + AT_rich Low_complexity Low_complexity 1 22 0 256 361 12 0 chr3 81555607 81555690 -136481468 - L2 LINE L2 -33 3239 3156 430 360 14 0 chr3 81555742 81555889 -136481269 - L2 LINE L2 -6 3266 3118 2251 118 0 9 chr3 81555899 81556214 -136480944 + AluSx SINE Alu 1 312 0 525 216 101 65 chr3 81557447 81557646 -136479512 - MLT1K LTR MaLR -5 583 378 250 295 32 11 chr3 81558379 81558474 -136478684 - MIR SINE MIR -56 206 110 239 258 47 78 chr3 81558561 81558689 -136478469 - L2 LINE L2 -1034 2280 2157 2190 202 52 30 chr3 81558752 81559218 -136477940 + MLT2B1 LTR ERVL 2 477 -43 404 147 53 14 chr3 81559218 81559434 -136477724 + (TA)n Simple_repeat Simple_repeat 1 224 0 389 91 0 0 chr3 81559435 81559490 -136477668 + MLT2B1 LTR ERVL 466 520 0 1729 176 0 17 chr3 81559778 81560080 -136477078 + AluJo SINE Alu 1 297 -15 1193 161 36 54 chr3 81560792 81561015 -136476143 - MER20 DNA MER1_type 0 219 1 237 211 206 57 chr3 81561049 81561258 -136475900 - L1ME4a LINE L1 -3 6118 5879 275 348 90 0 chr3 81561288 81561443 -136475715 - L1ME4a LINE L1 -314 5807 5639 341 299 53 2 chr3 81561558 81561698 -136475460 - MIR SINE MIR -55 153 33 386 194 0 117 chr3 81561712 81561815 -136475343 + U6 snRNA snRNA 1 91 -16 357 75 0 0 chr3 81562919 81562972 -136474186 + (TG)n Simple_repeat Simple_repeat 2 54 0 1837 141 0 37 chr3 81563295 81563594 -136473564 + AluSx SINE Alu 4 291 -21 1748 183 19 42 chr3 81563594 81563955 -136473203 + L1MB7 LINE L1 5832 6184 0 1318 165 173 0 chr3 81564258 81564513 -136472645 + AluJb SINE Alu 1 299 -13 512 300 13 13 chr3 81565410 81565560 -136471598 + MIR SINE MIR 23 172 -90 2209 107 0 0 chr3 81565659 81565939 -136471219 - AluSc SINE Alu -29 280 1 308 204 11 0 chr3 81566042 81566105 -136471053 + (TA)n Simple_repeat Simple_repeat 2 68 -22 1853 144 129 67 chr3 81566105 81566508 -136470650 - MSTA LTR MaLR 0 428 1 308 204 11 0 chr3 81566508 81566532 -136470626 + (TA)n Simple_repeat Simple_repeat 68 90 0 537 260 20 73 chr3 81566541 81566745 -136470413 - MLT1K LTR MaLR -4 584 392 350 247 0 0 chr3 81566749 81566826 -136470332 + MIR SINE MIR 186 262 0 * 381 229 38 19 chr3 81566798 81566903 -136470255 - MIR SINE MIR -38 224 118 2228 107 20 3 chr3 81567246 81567546 -136469612 + AluSx SINE Alu 1 305 -7 289 203 122 0 chr3 81567662 81567736 -136469422 + LTR33 LTR ERVL 59 141 -380 461 293 18 12 chr3 81567742 81567909 -136469249 + LTR33 LTR ERVL 331 498 -23 604 197 154 100 chr3 81567909 81568168 -136468990 + ORSL DNA AcHobo 1 273 -2 386 127 16 0 chr3 81570351 81570414 -136466744 - L1ME2 LINE L1 -62 6102 6039 591 295 75 21 chr3 81571221 81571374 -136465784 + MIR SINE MIR 6 178 -84 1564 223 24 12 chr3 81571374 81571711 -136465447 - MER58B DNA MER1_type 0 341 1 591 295 75 21 chr3 81571711 81571798 -136465360 + MIR SINE MIR 178 259 -3 1224 165 63 5 chr3 81572471 81572677 -136464481 + MER20 DNA MER1_type 1 218 -1 25 83 0 0 chr3 81573368 81573428 -136463730 + AT_rich Low_complexity Low_complexity 1 60 0 274 253 21 74 chr3 81573490 81573585 -136463573 - MIR SINE MIR -50 212 123 2004 206 55 71 chr3 81573690 81574253 -136462905 - MLT1H1 LTR MaLR 0 555 2 207 69 0 0 chr3 81574342 81574371 -136462787 + (A)n Simple_repeat Simple_repeat 1 29 0 439 329 225 25 chr3 81574415 81574975 -136462183 + L2 LINE L2 2130 2801 -513 2624 107 3 0 chr3 81576044 81576391 -136460767 - L1PB1 LINE L1 0 6151 5804 321 302 78 0 chr3 81576526 81576642 -136460516 - MIR SINE MIR -62 200 76 755 217 39 11 chr3 81576720 81576900 -136460258 + L1MC5 LINE L1 7723 7907 -54 1597 175 14 11 chr3 81576929 81577229 -136459929 - AluJb SINE Alu 0 301 1 2092 155 0 0 chr3 81577931 81578234 -136458924 + AluSx SINE Alu 1 303 -9 766 244 22 35 chr3 81578234 81578463 -136458695 + L1ME LINE L1 5554 5779 -342 211 233 14 82 chr3 81579230 81579303 -136457855 - MIR SINE MIR -81 127 60 1686 160 37 17 chr3 81581862 81582156 -136455002 + AluSx SINE Alu 3 302 -10 7781 47 0 3 chr3 81582690 81583798 -136453360 + L1PA6 LINE L1 5050 6154 0 186 235 0 118 chr3 81584254 81584356 -136452802 - MIR3 SINE MIR -10 198 109 1778 164 3 10 chr3 81584849 81585142 -136452016 + AluJb SINE Alu 1 291 -21 2335 151 26 3 chr3 81585142 81585525 -136451633 + MER57A LTR ERV1 12 403 0 481 278 80 2 chr3 81585669 81585843 -136451315 - MIR SINE MIR -57 151 7 260 259 0 0 chr3 81586208 81586262 -136450896 + GA-rich Low_complexity Low_complexity 6 59 0 185 295 16 33 chr3 81586598 81586659 -136450499 + L2 LINE L2 1384 1443 -1871 568 204 66 7 chr3 81587955 81588092 -136449066 - MER103 DNA DNA -2 164 20 2205 102 0 0 chr3 81588106 81588389 -136448769 - AluSc SINE Alu -26 283 1 553 229 50 21 chr3 81588505 81588645 -136448513 - MER5B DNA MER1_type 0 178 35 206 288 120 16 chr3 81588681 81588806 -136448352 - MIR SINE MIR -1 261 124 1705 181 10 0 chr3 81589557 81589860 -136447298 + AluJo SINE Alu 1 306 -6 267 157 0 0 chr3 81589949 81590000 -136447158 + CT-rich Low_complexity Low_complexity 4 54 0 278 96 135 0 chr3 81590058 81590110 -136447048 + MIR SINE MIR 54 112 -150 455 208 79 0 chr3 81590120 81590221 -136446937 + MER58C DNA MER1_type 69 177 -38 255 333 32 0 chr3 81590227 81590353 -136446805 + L1MC5 LINE L1 7263 7392 -569 574 284 90 23 chr3 81590379 81590766 -136446392 + LTR16A LTR ERVL 18 430 -20 1284 238 83 68 chr3 81590774 81591407 -136445751 + L2 LINE L2 2657 3313 0 246 146 93 0 chr3 81592487 81592562 -136444596 - MER58 DNA MER1_type -2 2418 125 25 0 0 0 chr3 81592567 81592592 -136444566 + AT_rich Low_complexity Low_complexity 1 25 0 381 43 0 0 chr3 81593303 81593350 -136443808 + (TG)n Simple_repeat Simple_repeat 2 48 0 1981 148 7 0 chr3 81593554 81593851 -136443307 + AluSx SINE Alu 1 299 -13 1015 139 23 12 chr3 81593852 81594024 -136443134 + AluSg/x SINE Alu 132 305 -4 877 258 67 5 chr3 81594548 81594757 -136442401 - MER58A DNA MER1_type 0 224 3 218 306 40 40 chr3 81595361 81595485 -136441673 - MIR SINE MIR -92 170 47 1082 232 87 24 chr3 81596640 81597054 -136440104 + MER113 DNA MER1_type? 75 514 -7 1825 175 0 7 chr3 81598587 81598884 -136438274 - AluSx SINE Alu -17 295 1 2123 120 0 0 chr3 81598913 81599220 -136437938 + AluSx SINE Alu 1 307 0 2335 91 3 0 chr3 81600357 81600653 -136436505 + AluSq SINE Alu 1 297 -16 565 318 12 0 chr3 81600663 81600833 -136436325 - MIR SINE MIR -90 172 1 198 71 0 0 chr3 81600897 81600925 -136436233 + (CA)n Simple_repeat Simple_repeat 1 28 0 539 266 27 33 chr3 81601574 81601758 -136435400 + MIR SINE MIR 3 185 -77 284 285 111 80 chr3 81602112 81602400 -136434758 + L2 LINE L2 2348 2644 -670 1274 225 68 41 chr3 81602441 81603017 -136434141 - MLT1D LTR MaLR 0 505 18 684 278 152 29 chr3 81603048 81603571 -136433587 + L2 LINE L2 2728 3309 -4 1677 137 8 0 chr3 81604602 81604851 -136432307 - AluSx SINE Alu -21 291 41 2502 82 0 0 chr3 81606143 81606446 -136430712 + AluSq SINE Alu 1 303 -10 804 215 14 0 chr3 81606467 81606611 -136430547 + FRAM SINE Alu 1 146 -30 198 0 0 0 chr3 81606612 81606634 -136430524 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 590 264 51 19 chr3 81606740 81606956 -136430202 - MIR SINE MIR 0 262 40 2099 121 24 3 chr3 81607020 81607318 -136429840 - AluSx SINE Alu -8 304 1 255 271 0 0 chr3 81607972 81608042 -136429116 + L1MD2 LINE L1 5591 5660 -2148 758 153 0 83 chr3 81608343 81608415 -136428743 + AluJo SINE Alu 14 90 -222 2773 68 6 3 chr3 81608415 81608769 -136428389 - THE1A LTR MaLR 0 355 1 11851 92 2 1 chr3 81608769 81610347 -136426811 - THE1A-int LTR MaLR 0 1580 1 2721 71 8 0 chr3 81610347 81610699 -136426459 - THE1A LTR MaLR 0 355 1 758 153 0 83 chr3 81610699 81610768 -136426390 + AluJo SINE Alu 87 145 -167 785 204 0 0 chr3 81610860 81610997 -136426161 + AluJo SINE Alu 129 265 -47 2083 130 7 0 chr3 81611180 81611479 -136425679 + AluSx SINE Alu 1 301 -11 322 362 49 5 chr3 81612448 81612633 -136424525 + MIR SINE MIR 8 200 -62 233 209 142 104 chr3 81613593 81613727 -136423431 - MIR SINE MIR -10 252 114 2141 135 0 0 chr3 81614042 81614339 -136422819 - AluSx SINE Alu -15 297 1 221 313 0 0 chr3 81614478 81614545 -136422613 + (CATATA)n Simple_repeat Simple_repeat 3 69 0 1989 121 61 10 chr3 81615242 81615539 -136421619 + AluSx SINE Alu 1 312 0 318 290 108 37 chr3 81615713 81615927 -136421231 + MIR SINE MIR 20 248 -14 1853 149 13 23 chr3 81616615 81616917 -136420241 + AluJb SINE Alu 3 301 -11 22 35 0 0 chr3 81617469 81617498 -136419660 + AT_rich Low_complexity Low_complexity 1 29 0 2343 80 0 10 chr3 81617631 81617931 -136419227 - AluSc SINE Alu -12 297 1 1791 107 0 8 chr3 81618583 81618826 -136418332 + AluSc SINE Alu 1 241 -68 725 182 263 14 chr3 81618827 81619036 -136418122 + MLT1F1 LTR MaLR 307 567 0 1914 148 0 42 chr3 81619331 81619641 -136417517 - AluJb SINE Alu -15 297 1 480 204 97 156 chr3 81619689 81619958 -136417200 + L1MD2 LINE L1 6021 6273 -86 1877 98 114 3 chr3 81619988 81620285 -136416873 + THE1B LTR MaLR 1 330 -34 407 281 125 5 chr3 81620352 81620544 -136416614 + L1ME3A LINE L1 5944 6158 -12 773 202 0 0 chr3 81620582 81620711 -136416447 - FLAM_C SINE Alu -4 129 1 328 292 20 64 chr3 81621285 81621455 -136415703 - L1MC5 LINE L1 -50 7911 7750 1822 176 7 0 chr3 81621455 81621751 -136415407 + AluJb SINE Alu 1 298 -14 328 292 20 64 chr3 81621751 81621782 -136415376 - L1MC5 LINE L1 -211 7750 7719 431 167 0 0 chr3 81622638 81622710 -136414448 + MLT1A2 LTR MaLR 1 72 -302 * 435 66 16 0 chr3 81622706 81622767 -136414391 + MLT1A1 LTR MaLR 304 365 0 203 336 89 34 chr3 81623222 81623368 -136413790 - MIR SINE MIR -19 243 90 311 307 93 58 chr3 81623459 81623664 -136413494 + MIR SINE MIR 1 212 -50 27 49 0 0 chr3 81623998 81624039 -136413119 + AT_rich Low_complexity Low_complexity 1 41 0 1940 120 3 33 chr3 81624047 81624348 -136412810 + AluSx SINE Alu 5 296 -16 180 0 0 0 chr3 81626595 81626615 -136410543 + (CAA)n Simple_repeat Simple_repeat 2 21 0 458 275 40 13 chr3 81626685 81626834 -136410324 - L2 LINE L2 -2 3311 3159 717 195 17 17 chr3 81626874 81627048 -136410110 - MER58B DNA MER1_type -1 340 167 977 254 62 8 chr3 81627112 81627356 -136409802 + MIR SINE MIR 1 257 -5 303 257 19 57 chr3 81627523 81627628 -136409530 - L2 LINE L2 -25 3288 3188 216 67 0 0 chr3 81627864 81627894 -136409264 + (T)n Simple_repeat Simple_repeat 1 30 0 1383 160 122 8 chr3 81628048 81628311 -136408847 + AluJb SINE Alu 18 310 -2 204 214 45 67 chr3 81629408 81629497 -136407661 + L2 LINE L2 2986 3072 -200 23 105 0 0 chr3 81629896 81629982 -136407176 + GC_rich Low_complexity Low_complexity 1 86 0 25 83 0 0 chr3 81630005 81630065 -136407093 + GC_rich Low_complexity Low_complexity 1 60 0 254 169 65 78 chr3 81631341 81631418 -136405740 - MIR SINE MIR 0 262 187 3965 66 29 41 chr3 81631452 81632013 -136405145 + MER41A LTR ERV1 1 554 0 882 127 100 7 chr3 81632094 81632244 -136404914 + AluJb SINE Alu 136 299 -13 729 160 8 8 chr3 81632330 81632461 -136404697 - FLAM_C SINE Alu -1 132 2 522 189 0 41 chr3 81632637 81632759 -136404399 + L1MC5 LINE L1 5736 5852 -1956 1941 148 3 0 chr3 81632931 81632942 -136404216 - AluSx SINE Alu -20 292 283 402 21 0 0 chr3 81632942 81632989 -136404169 + (TG)n Simple_repeat Simple_repeat 1 47 0 1941 148 3 0 chr3 81632989 81633267 -136403891 - AluSx SINE Alu -29 283 2 1529 222 95 77 chr3 81633618 81634529 -136402629 + L1MC5 LINE L1 6531 7467 -494 665 284 107 5 chr3 81634785 81634958 -136402200 + MIR SINE MIR 1 202 -60 737 256 88 31 chr3 81634958 81635275 -136401883 - MER46C DNA MER2_type -2 336 2 665 284 107 5 chr3 81635275 81635316 -136401842 + MIR SINE MIR 202 237 -25 2110 111 38 0 chr3 81636059 81636347 -136400811 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr3 81637230 81637252 -136399906 + AT_rich Low_complexity Low_complexity 1 22 0 1895 146 30 24 chr3 81637687 81638022 -136399136 + MER44D DNA MER2_type 2 608 -1 2297 99 0 10 chr3 81638364 81638667 -136398491 - AluSx SINE Alu -12 300 1 889 145 79 75 chr3 81641439 81641666 -136395492 - MER46A DNA MER2_type -8 228 1 1997 92 18 85 chr3 81642998 81643326 -136393832 + AluSp SINE Alu 1 306 -7 2268 131 0 0 chr3 81643666 81643978 -136393180 - AluSx SINE Alu 0 312 1 1417 112 36 9 chr3 81644266 81644490 -136392668 + MER30 DNA MER1_type 1 230 0 2221 101 20 0 chr3 81645716 81646014 -136391144 - AluSx SINE Alu -8 304 1 2099 99 14 0 chr3 81646127 81646421 -136390737 - AluSx SINE Alu -14 298 1 3632 195 82 41 chr3 81646940 81648097 -136389061 + L1MD2 LINE L1 4905 6161 -198 204 40 0 0 chr3 81648097 81648122 -136389036 + (CA)n Simple_repeat Simple_repeat 2 26 0 3632 195 82 41 chr3 81648122 81648330 -136388828 + L1MD2 LINE L1 6161 6359 0 2156 114 3 3 chr3 81649291 81649589 -136387569 - AluSx SINE Alu -14 298 1 1527 84 0 0 chr3 81649783 81649973 -136387185 + AluY SINE Alu 113 302 -9 1676 156 71 4 chr3 81650521 81650790 -136386368 - AluJb SINE Alu -25 287 1 797 186 0 14 chr3 81651023 81651168 -136385990 + AluSg/x SINE Alu 141 283 -29 303 291 79 0 chr3 81651545 81651710 -136385448 - L1ME LINE L1 -264 5857 5680 386 311 156 0 chr3 81651801 81651936 -136385222 - L2 LINE L2 -1 3271 3116 2208 109 17 0 chr3 81652284 81652577 -136384581 - AluSx SINE Alu -14 298 1 1183 291 85 40 chr3 81652616 81653427 -136383731 - L1MC4 LINE L1 -32 8010 7163 1690 139 37 54 chr3 81653820 81654114 -136383044 + AluSx SINE Alu 1 289 -23 2316 168 30 27 chr3 81655045 81655389 -136381769 - L1M4 LINE L1 -409 5775 5433 2087 106 6 56 chr3 81655389 81655565 -136381593 - AluSc SINE Alu -3 306 152 2292 90 0 7 chr3 81655565 81655864 -136381294 - AluSq SINE Alu -16 297 1 2087 106 6 56 chr3 81655864 81656009 -136381149 - AluSc SINE Alu -157 152 1 2316 168 30 27 chr3 81656009 81656485 -136380673 - L1M4 LINE L1 -751 5433 4891 295 234 13 164 chr3 81656596 81656900 -136380258 - L1MC4a LINE L1 -1760 6048 5791 445 303 55 9 chr3 81656961 81657179 -136379979 - L1MC4 LINE L1 -1876 5932 5705 259 291 142 40 chr3 81657420 81657695 -136379463 - L1ME LINE L1 -237 5884 5582 1918 101 4 0 chr3 81658719 81658998 -136378160 - AluSx SINE Alu 0 314 35 304 207 23 46 chr3 81659510 81659597 -136377561 - L1MC5 LINE L1 -60 7901 7817 22 0 0 0 chr3 81659671 81659693 -136377465 + AT_rich Low_complexity Low_complexity 1 22 0 1205 127 0 6 chr3 81659693 81659859 -136377299 + AluSx SINE Alu 1 165 -147 1161 148 11 0 chr3 81659862 81660044 -136377114 + AluSg/x SINE Alu 120 303 -9 180 0 0 0 chr3 81660838 81660858 -136376300 + (A)n Simple_repeat Simple_repeat 1 20 0 1801 135 4 15 chr3 81660931 81661205 -136375953 + AluJb SINE Alu 16 286 -26 233 103 0 0 chr3 81661210 81661249 -136375909 - L1MC4 LINE L1 -1339 6703 6665 1797 157 0 10 chr3 81661304 81661598 -136375560 - AluSx SINE Alu -21 291 1 344 160 67 27 chr3 81661771 81661846 -136375312 + L2 LINE L2 3190 3267 -5 272 300 110 10 chr3 81662089 81662189 -136374969 + L2 LINE L2 3163 3272 0 814 181 0 0 chr3 81662857 81662990 -136374168 - FLAM_C SINE Alu 0 133 1 520 290 161 0 chr3 81663371 81663526 -136373632 - MER5A DNA MER1_type 0 189 10 199 349 45 23 chr3 81664142 81664274 -136372884 - L3 LINE CR1 -1071 506 372 419 293 134 0 chr3 81664390 81664554 -136372604 + MIR SINE MIR 77 262 0 21 0 0 0 chr3 81665019 81665040 -136372118 + AT_rich Low_complexity Low_complexity 1 21 0 1739 170 34 0 chr3 81665202 81665496 -136371662 + AluJo SINE Alu 1 304 -8 2044 100 82 0 chr3 81665515 81665794 -136371364 + AluSg SINE Alu 1 302 -8 421 292 73 8 chr3 81668868 81669038 -136368120 + MIR SINE MIR 36 214 -48 210 71 0 0 chr3 81669299 81669327 -136367831 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr3 81669888 81669910 -136367248 + AT_rich Low_complexity Low_complexity 1 22 0 814 168 0 0 chr3 81670038 81670169 -136366989 - FLAM_A SINE Alu -2 131 1 315 206 0 16 chr3 81670504 81670567 -136366591 + MIR3 SINE MIR 111 172 -36 249 293 133 0 chr3 81671093 81671168 -136365990 - MER5A DNA MER1_type -103 86 2 208 200 27 0 chr3 81672054 81672129 -136365029 + (CCCCG)n Simple_repeat Simple_repeat 5 81 0 21 57 0 0 chr3 81672542 81672577 -136364581 + GC_rich Low_complexity Low_complexity 1 35 0 271 317 201 15 chr3 81673258 81673457 -136363701 - MIR SINE MIR -24 238 3 2079 144 3 0 chr3 81673741 81674047 -136363111 + AluJb SINE Alu 2 308 -4 186 103 0 0 chr3 81675385 81675414 -136361744 + (A)n Simple_repeat Simple_repeat 1 29 0 1726 145 0 77 chr3 81675620 81675944 -136361214 + AluJo SINE Alu 1 299 -13 2090 111 14 4 chr3 81675977 81676256 -136360902 - AluSq SINE Alu -31 282 1 24 32 0 0 chr3 81676320 81676351 -136360807 + AT_rich Low_complexity Low_complexity 1 31 0 2125 117 7 7 chr3 81676481 81676788 -136360370 + AluSx SINE Alu 1 307 -5 180 77 0 0 chr3 81677086 81677112 -136360046 + (TA)n Simple_repeat Simple_repeat 2 27 0 244 346 45 28 chr3 81677433 81677612 -136359546 - MIR SINE MIR -61 201 20 24 67 0 0 chr3 81677705 81677750 -136359408 + AT_rich Low_complexity Low_complexity 1 45 0 2424 62 0 26 chr3 81678570 81678876 -136358282 + AluY SINE Alu 1 298 -13 2038 271 176 30 chr3 81678886 81680177 -136356981 - L2 LINE L2 -2 3311 1745 1820 141 36 16 chr3 81681569 81681875 -136355283 + AluJo SINE Alu 1 312 0 2179 133 3 0 chr3 81682886 81683195 -136353963 + AluSx SINE Alu 1 310 -2 180 164 29 157 chr3 81683208 81683348 -136353810 + MER5C DNA MER1_type 190 311 -13 2065 102 41 14 chr3 81683643 81683936 -136353222 + AluSx SINE Alu 2 302 -10 192 77 0 0 chr3 81683992 81684018 -136353140 + (T)n Simple_repeat Simple_repeat 1 26 0 26 30 0 0 chr3 81684464 81684497 -136352661 + AT_rich Low_complexity Low_complexity 1 33 0 285 244 16 57 chr3 81684655 81684778 -136352380 - L1ME4a LINE L1 -54 6067 5950 1692 229 73 12 chr3 81685148 81685781 -136351377 + L1MD2 LINE L1 4354 5028 -1118 2223 95 40 0 chr3 81685781 81686077 -136351081 + AluSx SINE Alu 1 308 -4 784 203 7 0 chr3 81686207 81686345 -136350813 + FAM SINE Alu 26 164 -21 959 183 125 7 chr3 81686362 81686698 -136350460 + L1MD2 LINE L1 5106 5480 -743 475 185 0 0 chr3 81686679 81686771 -136350387 + L1MD2 LINE L1 5866 5957 -402 * 1361 180 4 0 chr3 81686771 81686999 -136350159 + AluJb SINE Alu 1 229 -83 381 196 173 0 chr3 81687090 81687223 -136349935 + L1MD3 LINE L1 7832 7987 -8 707 196 16 58 chr3 81688772 81688961 -136348197 - L1MC1 LINE L1 0 6333 6153 866 311 163 66 chr3 81690928 81691017 -136346141 - L3 LINE CR1 -139 1438 1359 2096 123 3 3 chr3 81691017 81691310 -136345848 + AluSq SINE Alu 1 293 -20 866 311 163 66 chr3 81691310 81691461 -136345697 - L3 LINE CR1 -218 1359 1224 2212 148 78 10 chr3 81691461 81691859 -136345299 - MSTB LTR MaLR 0 426 2 866 311 163 66 chr3 81691859 81692760 -136344398 - L3 LINE CR1 -353 1224 185 387 335 117 10 chr3 81692838 81693035 -136344123 + L2 LINE L2 2853 3070 -243 765 282 138 26 chr3 81693159 81693499 -136343659 + L2 LINE L2 2929 3306 -7 2333 46 0 18 chr3 81694311 81694596 -136342562 + AluY SINE Alu 29 308 -3 411 309 141 5 chr3 81694764 81694955 -136342203 + MIR SINE MIR 45 261 -1 2258 89 0 35 chr3 81697967 81698281 -136338877 - AluSq SINE Alu -10 303 1 309 234 202 0 chr3 81699127 81699251 -136337907 - Charlie8 DNA MER1_type -2258 159 11 1749 160 118 15 chr3 81699363 81699694 -136337464 - MLT1A1 LTR MaLR 0 365 1 2081 92 7 0 chr3 81701025 81701307 -136335851 - AluSx SINE Alu -15 297 14 389 260 10 0 chr3 81701334 81701438 -136335720 - MIR SINE MIR -78 184 80 2206 127 0 0 chr3 81702229 81702537 -136334621 - AluSx SINE Alu -4 308 1 1457 174 69 28 chr3 81703119 81703407 -136333751 - AluJb SINE Alu -8 304 5 372 140 0 0 chr3 81706408 81706465 -136330693 - AluJ/FRAM SINE Alu -19 283 227 1592 165 22 0 chr3 81706465 81706738 -136330420 - AluJo SINE Alu -33 279 1 289 157 0 0 chr3 81706752 81706803 -136330355 - AluSx SINE Alu -1 300 250 1650 120 0 0 chr3 81706803 81707020 -136330138 - AluSx SINE Alu -95 217 1 2206 117 0 16 chr3 81707025 81707342 -136329816 - AluSq SINE Alu -1 312 1 542 284 48 26 chr3 81707497 81707726 -136329432 - L1ME LINE L1 -403 5767 5534 848 149 0 8 chr3 81708911 81709045 -136328113 + AluJb SINE Alu 1 133 -179 1733 194 7 0 chr3 81709048 81709357 -136327801 + AluJb SINE Alu 1 311 -1 21 0 0 0 chr3 81710120 81710141 -136327017 + AT_rich Low_complexity Low_complexity 1 21 0 2194 123 0 3 chr3 81710180 81710488 -136326670 + AluSx SINE Alu 1 307 -5 369 291 79 0 chr3 81710841 81711006 -136326152 - L1ME4a LINE L1 -264 5857 5680 370 311 156 0 chr3 81711097 81711232 -136325926 - L2 LINE L2 -1 3271 3116 592 273 41 5 chr3 81711574 81711768 -136325390 - AluY SINE Alu -16 295 95 2393 103 0 0 chr3 81713207 81713519 -136323639 + AluSx SINE Alu 1 312 0 1930 105 26 70 chr3 81713977 81714290 -136322868 + AluSq SINE Alu 1 299 -14 477 262 42 52 chr3 81717197 81717388 -136319770 - MER5A DNA MER1_type 0 189 1 206 350 0 39 chr3 81717405 81717508 -136319650 + MER5B DNA MER1_type 5 103 -75 394 312 56 0 chr3 81717557 81717682 -136319476 - MIR3 SINE MIR -39 169 38 363 198 9 94 chr3 81718370 81718426 -136318732 + L2 LINE L2 3216 3260 -53 1140 184 196 8 chr3 81718426 81718676 -136318482 + AluSx SINE Alu 2 298 -4 363 198 9 94 chr3 81718676 81718725 -136318433 + L2 LINE L2 3260 3312 -1 386 267 227 6 chr3 81719221 81719364 -136317794 - MIR SINE MIR -10 252 64 1886 161 7 7 chr3 81719364 81719668 -136317490 + AluJb SINE Alu 1 304 -8 386 267 227 6 chr3 81719668 81719696 -136317462 - MIR SINE MIR -198 64 43 532 287 116 23 chr3 81719872 81720130 -136317028 + Charlie8 DNA MER1_type 4 285 -2132 2220 122 0 10 chr3 81720178 81720489 -136316669 - AluSx SINE Alu -4 308 1 332 221 0 13 chr3 81720499 81720576 -136316582 + Charlie8 DNA MER1_type 2341 2416 -1 2170 112 0 35 chr3 81720760 81720905 -136316253 + AluSx SINE Alu 2 151 -161 2398 86 3 3 chr3 81720905 81721209 -136315949 + AluSq SINE Alu 1 304 -9 2170 112 0 35 chr3 81721209 81721376 -136315782 + AluSx SINE Alu 151 303 -9 1634 162 3 62 chr3 81721979 81722287 -136314871 + AluJb SINE Alu 7 296 -16 2393 96 0 0 chr3 81722549 81722852 -136314306 + AluSg SINE Alu 2 304 -6 234 81 0 0 chr3 81723393 81723430 -136313728 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 2070 129 17 0 chr3 81723655 81723949 -136313209 + AluSx SINE Alu 1 299 -13 38 51 0 0 chr3 81724027 81724086 -136313072 + AT_rich Low_complexity Low_complexity 1 59 0 223 267 50 0 chr3 81724212 81724272 -136312886 - MIR3 SINE MIR -37 171 109 282 317 171 0 chr3 81724564 81724687 -136312471 - MIR3 SINE MIR -11 197 54 204 383 12 0 chr3 81724996 81725077 -136312081 + L2 LINE L2 2751 2832 -482 406 268 128 50 chr3 81725082 81725261 -136311897 + MER91A DNA MER1_type 1 193 -3 800 228 28 39 chr3 81725476 81725656 -136311502 - AluJb SINE Alu -13 299 122 1974 120 7 0 chr3 81725656 81725932 -136311226 - AluSx SINE Alu 0 312 35 345 207 23 46 chr3 81726444 81726531 -136310627 - L1MC5 LINE L1 -60 7901 7817 22 0 0 0 chr3 81726605 81726627 -136310531 + AT_rich Low_complexity Low_complexity 1 22 0 1199 127 0 6 chr3 81726627 81726793 -136310365 + AluSx SINE Alu 1 165 -147 1150 148 11 0 chr3 81726796 81726978 -136310180 + AluSg/x SINE Alu 118 301 -9 180 0 0 0 chr3 81727772 81727792 -136309366 + (A)n Simple_repeat Simple_repeat 1 20 0 1795 135 4 15 chr3 81727865 81728139 -136309019 + AluJb SINE Alu 16 286 -26 253 103 0 0 chr3 81728144 81728183 -136308975 - L1MC4 LINE L1 -1339 6703 6665 1793 157 0 10 chr3 81728238 81728532 -136308626 - AluSx SINE Alu -21 291 1 345 160 67 27 chr3 81728705 81728780 -136308378 + L2 LINE L2 3190 3267 -5 269 300 110 10 chr3 81729023 81729123 -136308035 + L2 LINE L2 3163 3272 0 817 148 16 0 chr3 81729790 81729912 -136307246 - FLAM_C SINE Alu -6 137 14 517 290 161 0 chr3 81730308 81730463 -136306695 - MER5A DNA MER1_type 0 189 10 195 349 45 23 chr3 81731079 81731211 -136305947 - L3 LINE CR1 -1071 506 372 401 293 134 0 chr3 81731327 81731491 -136305667 + MIR SINE MIR 77 262 0 21 0 0 0 chr3 81731956 81731977 -136305181 + AT_rich Low_complexity Low_complexity 1 21 0 1723 170 34 0 chr3 81732139 81732433 -136304725 + AluJo SINE Alu 1 304 -8 2039 100 82 0 chr3 81732452 81732731 -136304427 + AluSg SINE Alu 1 302 -8 421 292 73 8 chr3 81735805 81735975 -136301183 + MIR SINE MIR 36 214 -48 210 71 0 0 chr3 81736236 81736264 -136300894 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr3 81736825 81736847 -136300311 + AT_rich Low_complexity Low_complexity 1 22 0 866 168 0 0 chr3 81736975 81737106 -136300052 - FLAM_A SINE Alu -2 131 1 321 206 0 16 chr3 81737441 81737504 -136299654 + MIR3 SINE MIR 111 172 -36 243 293 133 0 chr3 81738030 81738105 -136299053 - MER5A DNA MER1_type -103 86 2 208 200 27 0 chr3 81738991 81739066 -136298092 + (CCCCG)n Simple_repeat Simple_repeat 5 81 0 21 57 0 0 chr3 81739475 81739510 -136297648 + GC_rich Low_complexity Low_complexity 1 35 0 260 317 201 15 chr3 81740191 81740390 -136296768 - MIR SINE MIR -24 238 3 2068 144 3 0 chr3 81740674 81740980 -136296178 + AluJb SINE Alu 2 308 -4 186 103 0 0 chr3 81742318 81742347 -136294811 + (A)n Simple_repeat Simple_repeat 1 29 0 1711 145 0 77 chr3 81742553 81742877 -136294281 + AluJo SINE Alu 1 299 -13 2088 111 14 4 chr3 81742910 81743189 -136293969 - AluSq SINE Alu -31 282 1 24 32 0 0 chr3 81743253 81743284 -136293874 + AT_rich Low_complexity Low_complexity 1 31 0 408 147 15 0 chr3 81743415 81743483 -136293675 + AluS SINE Alu 2 70 -243 266 222 19 0 chr3 81743621 81743675 -136293483 - MIR SINE MIR -4 258 204 363 264 216 18 chr3 81743690 81743857 -136293301 + MIR SINE MIR 7 206 -56 2172 116 20 3 chr3 81743860 81744162 -136292996 - AluSx SINE Alu -5 307 1 426 239 22 0 chr3 81744224 81744316 -136292842 - MIR SINE MIR -143 119 26 1004 139 24 6 chr3 81744435 81744601 -136292557 + AluSg/x SINE Alu 127 295 -15 216 0 0 0 chr3 81744601 81744625 -136292533 + (TA)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr3 81745301 81745325 -136291833 + AT_rich Low_complexity Low_complexity 1 24 0 783 185 19 37 chr3 81745325 81745487 -136291671 - FRAM SINE Alu -17 159 1 996 201 39 0 chr3 81746450 81746629 -136290529 + MER5A DNA MER1_type 3 188 -1 430 263 56 80 chr3 81747782 81747995 -136289163 - MER102a DNA MER1_type -16 314 107 2005 109 40 0 chr3 81748268 81748544 -136288614 - AluSx SINE Alu -25 287 1 1714 174 0 23 chr3 81748621 81748920 -136288238 - AluJo SINE Alu -20 292 1 1673 156 25 25 chr3 81748948 81749231 -136287927 + AluJb SINE Alu 2 284 -28 315 0 0 0 chr3 81749231 81749266 -136287892 + (CA)n Simple_repeat Simple_repeat 2 36 0 656 228 166 19 chr3 81749537 81749748 -136287410 + HsTC2 DNA Tc2 11 252 -1646 360 157 270 0 chr3 81749752 81749841 -136287317 + L1MC4 LINE L1 7929 8041 -1 1240 206 146 6 chr3 81749849 81750165 -136286993 + HsTC2 DNA Tc2 232 591 -1307 254 289 60 12 chr3 81750431 81750514 -136286644 + L2 LINE L2 3150 3236 -36 2309 101 0 0 chr3 81751581 81751877 -136285281 - AluSc SINE Alu -13 296 1 773 243 84 0 chr3 81752007 81752221 -136284937 + MIR SINE MIR 29 260 -2 210 180 0 0 chr3 81753620 81753681 -136283477 + CT-rich Low_complexity Low_complexity 2 62 0 195 42 0 0 chr3 81754384 81754408 -136282750 + (TA)n Simple_repeat Simple_repeat 2 25 0 581 253 34 7 chr3 81757029 81757175 -136279983 + L1MC/D LINE L1 5558 5707 -2101 22 56 0 0 chr3 81757226 81757262 -136279896 + AT_rich Low_complexity Low_complexity 1 36 0 1506 150 127 0 chr3 81757262 81757515 -136279643 - AluJb SINE Alu -27 285 1 251 271 113 23 chr3 81757537 81757670 -136279488 - L1ME4a LINE L1 -22 6099 5955 571 271 12 56 chr3 81757755 81758006 -136279152 - L1ME4a LINE L1 -298 5823 5584 288 98 0 0 chr3 81758010 81758051 -136279107 - MADE1 DNA Mariner -38 42 2 2102 131 7 0 chr3 81758106 81758412 -136278746 + AluSx SINE Alu 1 308 -4 2188 129 3 0 chr3 81758779 81759090 -136278068 - AluSx SINE Alu 0 312 1 217 0 0 57 chr3 81759232 81759267 -136277891 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 362 268 73 8 chr3 81759291 81759414 -136277744 - MER103 DNA DNA -20 146 16 281 279 272 14 chr3 81759452 81759599 -136277559 + MIR SINE MIR 20 204 -58 201 240 20 0 chr3 81759639 81759689 -136277469 + MIR SINE MIR 212 262 0 185 255 0 21 chr3 81760332 81760379 -136276779 - MIR3 SINE MIR -9 199 154 266 223 149 58 chr3 81760381 81760502 -136276656 - MER5A DNA MER1_type -22 167 36 * 370 262 111 16 chr3 81760398 81760524 -136276634 + MER5A DNA MER1_type 50 187 -2 759 288 131 36 chr3 81760587 81761194 -136275964 - L2 LINE L2 0 3313 2626 405 0 0 0 chr3 81761593 81761638 -136275520 + (CA)n Simple_repeat Simple_repeat 2 46 0 1591 204 0 3 chr3 81761783 81762091 -136275067 - AluJb SINE Alu 0 307 1 22 70 0 0 chr3 81762758 81762801 -136274357 + AT_rich Low_complexity Low_complexity 1 43 0 6016 36 0 0 chr3 81762801 81763467 -136273691 - L1PA3 LINE L1 -3 6152 5487 318 316 7 15 chr3 81763530 81763666 -136273492 + (CTA)n Simple_repeat Simple_repeat 3 137 0 186 133 0 0 chr3 81763667 81763697 -136273461 + (CTG)n Simple_repeat Simple_repeat 2 31 0 354 278 13 73 chr3 81763771 81763866 -136273292 - MIR SINE MIR -8 254 170 2236 114 3 0 chr3 81763866 81764165 -136272993 - AluSx SINE Alu -12 300 1 354 278 13 73 chr3 81764165 81764220 -136272938 - MIR SINE MIR -92 170 113 1412 196 30 4 chr3 81764514 81764785 -136272373 + AluJb SINE Alu 1 278 -34 252 0 0 0 chr3 81764785 81764813 -136272345 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 273 29 0 0 chr3 81764812 81764846 -136272312 + (CA)n Simple_repeat Simple_repeat 1 34 0 338 208 158 10 chr3 81765034 81765135 -136272023 + L1ME4a LINE L1 5930 6045 -76 1759 148 188 3 chr3 81765370 81765722 -136271436 + MSTA LTR MaLR 1 417 -11 453 132 22 44 chr3 81765989 81766080 -136271078 + L1MB3 LINE L1 6076 6164 -19 333 197 0 0 chr3 81766081 81766152 -136271006 + (TATATG)n Simple_repeat Simple_repeat 2 72 0 1984 130 21 0 chr3 81766157 81766441 -136270717 - AluSg SINE Alu -20 290 1 362 234 53 80 chr3 81767414 81767602 -136269556 + L1MEd LINE L1 1075 1257 -4862 2094 150 0 0 chr3 81767961 81768267 -136268891 + AluSx SINE Alu 1 306 -6 3724 154 32 10 chr3 81768267 81768890 -136268268 + L1MB2 LINE L1 5528 6164 -7 22 56 0 0 chr3 81769007 81769043 -136268115 + AT_rich Low_complexity Low_complexity 1 36 0 476 202 146 22 chr3 81769054 81769232 -136267926 + L1ME2 LINE L1 5747 5946 -218 1374 167 17 4 chr3 81769236 81769470 -136267688 + AluJo SINE Alu 1 237 -75 789 230 47 9 chr3 81769479 81769692 -136267466 + L1ME2 LINE L1 5935 6155 -9 276 217 171 16 chr3 81770082 81770211 -136266947 - L1ME4a LINE L1 -23 6098 5950 1793 168 7 17 chr3 81770400 81770692 -136266466 - AluJo SINE Alu -23 289 1 291 308 50 39 chr3 81770859 81771041 -136266117 - MARNA DNA Mariner -4 582 399 1558 204 17 28 chr3 81822805 81823163 -136213995 + MLT2C1 LTR ERVL 1 354 -43 228 163 0 0 chr3 81823163 81823206 -136213952 + (TG)n Simple_repeat Simple_repeat 2 44 0 1949 147 0 29 chr3 81823309 81823615 -136213543 - AluJo SINE Alu -15 297 1 235 184 0 0 chr3 81823615 81823664 -136213494 + L1ME3A LINE L1 6122 6170 0 1995 107 11 4 chr3 81823721 81823992 -136213166 - AluSx SINE Alu -5 307 35 228 239 0 0 chr3 81824047 81824093 -136213065 + MER91 DNA MER1_type 95 140 0 362 251 22 98 chr3 81824097 81824280 -136212878 + L2 LINE L2 3137 3305 -8 509 75 0 0 chr3 81824878 81824945 -136212213 + Alu SINE Alu 2 68 -243 403 263 0 44 chr3 81825069 81825183 -136211975 - L2 LINE L2 -13 3300 3192 225 374 8 32 chr3 81825235 81825358 -136211800 - MIR3 SINE MIR -79 129 10 2433 86 0 0 chr3 81825442 81825733 -136211425 - AluSg SINE Alu -15 295 5 2314 103 0 13 chr3 81826046 81826358 -136210800 + AluSp SINE Alu 1 308 -5 1459 164 9 0 chr3 81826362 81826587 -136210571 + AluJo SINE Alu 1 227 -85 863 43 50 0 chr3 81827467 81827608 -136209550 + (GGA)n Simple_repeat Simple_repeat 3 150 0 1724 144 10 67 chr3 81827709 81828021 -136209137 - AluSx SINE Alu -18 294 1 205 315 0 0 chr3 81828122 81828176 -136208982 + (CA)n Simple_repeat Simple_repeat 2 55 0 239 317 0 24 chr3 81829248 81829330 -136207828 - L2 LINE L2 -1 3271 3192 222 254 177 15 chr3 81829795 81829925 -136207233 - MIR SINE MIR -34 228 78 200 254 15 30 chr3 81830050 81830071 -136207087 + (TTCA)n Simple_repeat Simple_repeat 1 21 -45 2221 133 0 0 chr3 81830071 81830380 -136206778 - AluSx SINE Alu -3 309 1 200 254 15 30 chr3 81830380 81830425 -136206733 + (TTCA)n Simple_repeat Simple_repeat 21 66 0 305 226 98 15 chr3 81830713 81830846 -136206312 + L1ME4a LINE L1 5978 6121 0 1603 191 35 3 chr3 81831004 81831292 -136205866 - AluJo SINE Alu -15 297 1 442 286 104 33 chr3 81831354 81831805 -136205353 - L1ME4a LINE L1 0 6121 5639 286 83 0 83 chr3 81831837 81831885 -136205273 - Alu SINE Alu -9 293 250 709 112 0 0 chr3 81832053 81832151 -136205007 + AluSg/x SINE Alu 176 273 -39 2282 89 6 29 chr3 81832712 81833025 -136204133 - AluSc SINE Alu -3 306 1 2357 101 0 0 chr3 81833041 81833349 -136203809 - AluSg SINE Alu -2 308 1 362 239 0 0 chr3 81833419 81833490 -136203668 + MER103 DNA DNA 12 82 -84 1515 199 10 0 chr3 81833490 81833782 -136203376 - AluJo SINE Alu -7 305 11 1770 148 46 7 chr3 81833800 81834084 -136203074 - AluJb SINE Alu -17 295 1 180 281 16 31 chr3 81834383 81834447 -136202711 + L2 LINE L2 3209 3271 -1 387 323 79 6 chr3 81834455 81834619 -136202539 + MIR SINE MIR 23 198 -64 1071 184 0 0 chr3 81834654 81834822 -136202336 - FRAM SINE Alu -11 165 1 2059 118 11 0 chr3 81835058 81835338 -136201820 - AluSx SINE Alu -29 283 1 841 259 138 9 chr3 81835355 81835703 -136201455 + L1MC4 LINE L1 7078 7470 -572 223 333 60 47 chr3 81835721 81835871 -136201287 - MER5A DNA MER1_type -1 188 37 571 268 57 40 chr3 81835927 81836155 -136201003 + L1MC4 LINE L1 7517 7748 -294 244 143 0 86 chr3 81836258 81836328 -136200830 + L1MC4 LINE L1 6640 6703 -1339 180 0 0 0 chr3 81836328 81836348 -136200810 + (TA)n Simple_repeat Simple_repeat 2 21 0 486 0 0 0 chr3 81836348 81836402 -136200756 + (GA)n Simple_repeat Simple_repeat 2 55 0 1542 150 0 0 chr3 81836424 81836644 -136200514 - AluSx SINE Alu -92 220 1 2309 114 0 0 chr3 81837640 81837939 -136199219 - AluSp SINE Alu -13 300 2 491 290 116 34 chr3 81838000 81838207 -136198951 - MIR SINE MIR 0 262 39 1977 111 90 0 chr3 81838352 81838631 -136198527 - AluSx SINE Alu -8 304 1 1040 159 17 11 chr3 81838716 81838892 -136198266 - FRAM SINE Alu 0 176 1 248 213 33 0 chr3 81839105 81839166 -136197992 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 2526 74 0 0 chr3 81839266 81839575 -136197583 - AluSc SINE Alu 0 309 1 23 68 0 0 chr3 81839608 81839652 -136197506 + AT_rich Low_complexity Low_complexity 1 44 0 182 224 138 0 chr3 81840075 81840133 -136197025 + MIR3 SINE MIR 100 165 -43 2270 100 0 7 chr3 81840402 81840693 -136196465 + AluSx SINE Alu 1 289 -23 185 0 40 0 chr3 81840696 81840721 -136196437 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 189 0 0 0 chr3 81842441 81842462 -136194696 + (T)n Simple_repeat Simple_repeat 1 21 0 237 111 185 86 chr3 81842637 81842718 -136194440 + L1PA8A LINE L1 5475 5563 -568 329 200 47 0 chr3 81842946 81843031 -136194127 + L1MC4 LINE L1 7118 7206 -836 1468 173 39 32 chr3 81843171 81843455 -136193703 - AluJo SINE Alu -26 286 1 21 0 0 0 chr3 81843561 81843582 -136193576 + AT_rich Low_complexity Low_complexity 1 21 0 217 210 32 16 chr3 81843741 81843803 -136193355 - MIR SINE MIR -65 197 135 338 231 13 0 chr3 81844117 81844195 -136192963 + L2 LINE L2 3164 3242 -30 259 302 35 0 chr3 81844273 81844359 -136192799 - MLT1K LTR MaLR -1 587 499 1630 162 19 51 chr3 81845987 81846301 -136190857 - AluJo SINE Alu -8 304 1 676 206 85 0 chr3 81846897 81847038 -136190120 + MER117 DNA MER1_type 1 153 -44 610 191 26 0 chr3 81847266 81847381 -136189777 - MER58A DNA MER1_type 0 162 45 475 291 77 48 chr3 81848132 81848366 -136188792 + MIR SINE MIR 6 248 -14 1394 216 42 20 chr3 81848686 81848859 -136188299 - L1ME3A LINE L1 -239 5931 5763 2218 76 33 7 chr3 81848859 81849160 -136187998 + AluSp SINE Alu 1 309 -4 1394 216 42 20 chr3 81849160 81849343 -136187815 - L1ME3A LINE L1 -407 5763 5567 2080 142 0 0 chr3 81849353 81849648 -136187510 + AluSx SINE Alu 1 295 -17 2215 113 3 0 chr3 81849650 81849951 -136187207 + AluSg SINE Alu 1 302 -8 3696 172 77 46 chr3 81850233 81851528 -136185630 - pTR5 LTR ERV1 -120 2069 35 677 227 0 0 chr3 81851660 81851792 -136185366 + FRAM SINE Alu 1 128 -48 247 259 75 68 chr3 81852129 81852184 -136184974 - MIR SINE MIR -34 228 175 3676 121 17 8 chr3 81852184 81852706 -136184452 + MER1A DNA MER1_type 1 527 0 247 259 75 68 chr3 81852706 81852797 -136184361 - MIR SINE MIR -87 175 81 519 168 64 56 chr3 81853210 81853335 -136183823 + L1ME3 LINE L1 6037 6162 0 2051 140 0 17 chr3 81853354 81853491 -136183667 + AluJb SINE Alu 1 139 -173 2183 117 3 10 chr3 81853491 81853791 -136183367 + AluSx SINE Alu 1 298 -14 2051 140 0 17 chr3 81853791 81853953 -136183205 + AluJb SINE Alu 139 295 -17 972 223 58 0 chr3 81854490 81854696 -136182462 + MER20 DNA MER1_type 2 219 0 2085 149 0 0 chr3 81855000 81855301 -136181857 + AluSx SINE Alu 1 301 -11 938 176 0 0 chr3 81855510 81855669 -136181489 - FRAM SINE Alu -7 159 1 1017 134 0 49 chr3 81856047 81856211 -136180947 - FRAM SINE Alu -10 166 11 1105 226 121 18 chr3 81856232 81856613 -136180545 - L1MC4 LINE L1 -1 8041 7622 2305 101 3 16 chr3 81856757 81857074 -136180084 + AluSq SINE Alu 1 313 0 5683 241 77 34 chr3 81857561 81857611 -136179547 + L1MEc LINE L1 44 90 -6306 257 0 30 0 chr3 81857611 81857644 -136179514 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5683 241 77 34 chr3 81857644 81858534 -136178624 + L1MEc LINE L1 90 941 -5455 2234 121 0 6 chr3 81858534 81858849 -136178309 + AluSq SINE Alu 1 313 0 5683 241 77 34 chr3 81858849 81859216 -136177942 + L1MEc LINE L1 941 1291 -5105 2150 127 0 3 chr3 81859216 81859515 -136177643 + AluSx SINE Alu 1 298 -14 5683 241 77 34 chr3 81859515 81860237 -136176921 + L1MEc LINE L1 1291 2161 -4235 247 359 78 18 chr3 81860237 81860404 -136176754 - MER115 DNA AcHobo -466 227 51 2282 118 0 0 chr3 81860454 81860758 -136176400 - AluSg SINE Alu -6 304 1 328 160 17 92 chr3 81860808 81860927 -136176231 + MER5C DNA MER1_type 208 317 -7 262 267 0 0 chr3 81862847 81862910 -136174248 + MIR SINE MIR 59 121 -87 1617 182 42 64 chr3 81862944 81863169 -136173989 + LTR56 LTR ERV1 1 213 -232 2109 107 6 28 chr3 81863169 81863488 -136173670 + AluSx SINE Alu 1 312 0 1617 182 42 64 chr3 81863488 81863717 -136173441 + LTR56 LTR ERV1 213 445 0 323 294 20 14 chr3 81864306 81864452 -136172706 - MIR SINE MIR -6 256 110 207 0 0 0 chr3 81865566 81865589 -136171569 + (T)n Simple_repeat Simple_repeat 1 23 0 494 313 6 17 chr3 81865600 81865776 -136171382 - MIR SINE MIR -87 175 2 206 288 50 0 chr3 81865915 81865995 -136171163 - L2 LINE L2 -236 3036 2953 2238 124 10 0 chr3 81867257 81867564 -136169594 + AluSx SINE Alu 1 310 -2 367 287 108 24 chr3 81868751 81868918 -136168240 - MIR SINE MIR -64 198 18 626 246 21 58 chr3 81868927 81868987 -136168171 + MER20 DNA MER1_type 36 97 -122 1873 146 11 0 chr3 81868987 81869274 -136167884 - AluJb SINE Alu -22 290 1 626 246 21 58 chr3 81869274 81869404 -136167754 + MER20 DNA MER1_type 97 219 0 186 43 0 0 chr3 81869465 81869488 -136167670 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2036 132 0 0 chr3 81869490 81869762 -136167396 - AluSg SINE Alu -30 280 9 378 170 94 28 chr3 81870498 81870604 -136166554 - L1ME4a LINE L1 -18 6103 5991 916 264 142 35 chr3 81872009 81872677 -136164481 + L2 LINE L2 2576 3312 -1 209 301 71 44 chr3 81872713 81872826 -136164332 + L2 LINE L2 3197 3312 -1 2169 117 10 0 chr3 81874384 81874691 -136162467 - AluSx SINE Alu -2 310 1 1891 144 11 18 chr3 81874974 81875285 -136161873 - AluSx SINE Alu 0 309 1 954 265 19 109 chr3 81876123 81876446 -136160712 + L1MC4a LINE L1 5465 5816 -1992 2265 90 0 32 chr3 81876446 81876757 -136160401 + AluSq SINE Alu 1 301 -12 954 265 19 109 chr3 81876757 81876829 -136160329 + L1MC4a LINE L1 5816 5811 -1997 1010 178 12 0 chr3 81876829 81876998 -136160160 + FAM SINE Alu 3 173 -2 954 265 19 109 chr3 81876998 81877088 -136160070 + L1MC4a LINE L1 5810 5907 -1901 22 56 0 0 chr3 81877213 81877249 -136159909 + AT_rich Low_complexity Low_complexity 1 36 0 1943 146 3 37 chr3 81877297 81877619 -136159539 + AluJb SINE Alu 1 311 -1 895 165 0 99 chr3 81877667 81877849 -136159309 + FRAM SINE Alu 1 164 -2 2245 112 0 26 chr3 81877849 81878161 -136158997 + AluSx SINE Alu 1 304 -8 253 226 39 0 chr3 81879126 81879201 -136157957 - HsTC2 DNA Tc2 -1811 87 3 1023 172 0 0 chr3 81879256 81879419 -136157739 + FRAM SINE Alu 1 156 -20 1964 124 28 0 chr3 81881004 81881294 -136155864 - AluSx SINE Alu -14 298 1 392 188 0 12 chr3 81881915 81882000 -136155158 - MIR SINE MIR -102 160 77 687 296 103 52 chr3 81882033 81882094 -136155064 + L2 LINE L2 2827 2883 -430 1980 149 0 7 chr3 81882094 81882395 -136154763 - AluJb SINE Alu -13 299 1 687 296 103 52 chr3 81882395 81882779 -136154379 + L2 LINE L2 2883 3295 -18 1533 166 3 62 chr3 81882779 81883086 -136154072 - AluJo SINE Alu -12 300 12 1554 179 7 31 chr3 81883111 81883402 -136153756 - AluJo SINE Alu -28 284 1 306 98 0 0 chr3 81884187 81884238 -136152920 + (CA)n Simple_repeat Simple_repeat 2 52 0 279 0 0 0 chr3 81884237 81884268 -136152890 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 192 40 0 0 chr3 81885469 81885494 -136151664 + (TAA)n Simple_repeat Simple_repeat 2 26 0 551 259 62 0 chr3 81885529 81885691 -136151467 - MIR SINE MIR -71 191 20 2044 99 46 11 chr3 81886272 81886555 -136150603 + AluSx SINE Alu 1 293 -19 397 248 163 0 chr3 81886741 81886894 -136150264 - MIR SINE MIR -80 182 5 2919 10 0 0 chr3 81887513 81887824 -136149334 + AluY SINE Alu 1 311 0 23 33 0 0 chr3 81887868 81887898 -136149260 + AT_rich Low_complexity Low_complexity 1 30 0 1981 149 3 3 chr3 81887901 81888197 -136148961 + AluSx SINE Alu 1 296 -16 1872 166 0 3 chr3 81888207 81888508 -136148650 + AluJb SINE Alu 1 300 -12 981 169 23 12 chr3 81888539 81888711 -136148447 + FAM SINE Alu 2 175 0 24 53 0 0 chr3 81889012 81889050 -136148108 + AT_rich Low_complexity Low_complexity 1 38 0 205 244 0 0 chr3 81889137 81889178 -136147980 + (TG)n Simple_repeat Simple_repeat 2 42 0 463 280 107 22 chr3 81889178 81889449 -136147709 - L1MC4a LINE L1 -1849 5959 5666 309 318 71 7 chr3 81889565 81889719 -136147439 - MIR SINE MIR -3 259 96 455 287 69 11 chr3 81889969 81890143 -136147015 - MIR SINE MIR -26 236 53 1454 119 171 16 chr3 81890495 81890746 -136146412 + AluSg SINE Alu 1 290 -10 338 209 47 35 chr3 81890918 81891004 -136146154 + MLT1K LTR MaLR 187 273 -315 2248 106 0 26 chr3 81891122 81891434 -136145724 + AluSx SINE Alu 3 306 -6 1585 207 7 10 chr3 81891630 81891930 -136145228 - AluJo SINE Alu -13 299 1 489 286 45 45 chr3 81892357 81892577 -136144581 + Charlie8 DNA MER1_type 45 264 -2153 201 300 54 26 chr3 81892694 81892837 -136144321 - MIR SINE MIR -25 237 90 271 302 35 0 chr3 81892845 81892931 -136144227 + MIR SINE MIR 34 122 -140 270 258 313 11 chr3 81893289 81893471 -136143687 - MIR SINE MIR -22 240 4 430 269 103 13 chr3 81893637 81893793 -136143365 - MIR3 SINE MIR -6 202 33 29 0 0 0 chr3 81893874 81893903 -136143255 + AT_rich Low_complexity Low_complexity 1 29 0 1552 160 110 11 chr3 81893966 81894248 -136142910 + AluJo SINE Alu 1 310 -2 370 226 10 39 chr3 81895218 81895320 -136141838 + L2 LINE L2 3215 3313 0 1681 188 28 3 chr3 81895375 81895663 -136141495 - AluJb SINE Alu -17 295 1 285 234 84 90 chr3 81896138 81896250 -136140908 - MIR SINE MIR -21 241 141 1882 148 0 14 chr3 81896250 81896541 -136140617 - AluJo SINE Alu -10 302 16 285 234 84 90 chr3 81896541 81896639 -136140519 - MIR SINE MIR -121 141 44 259 301 26 18 chr3 81896693 81896806 -136140352 + GA-rich Low_complexity Low_complexity 1 114 0 2255 94 13 7 chr3 81896940 81897238 -136139920 + AluSx SINE Alu 1 300 -12 405 0 0 0 chr3 81897264 81897309 -136139849 + (TA)n Simple_repeat Simple_repeat 2 46 0 650 281 5 38 chr3 81897321 81897506 -136139652 - MIR SINE MIR -77 185 7 287 284 46 0 chr3 81897989 81898098 -136139060 - L2 LINE L2 0 3313 3200 884 187 139 0 chr3 81898107 81898294 -136138864 - MER20 DNA MER1_type -6 213 1 1415 177 72 11 chr3 81898466 81898784 -136138374 + AluJo SINE Alu 1 334 0 266 322 99 25 chr3 81899189 81899310 -136137848 + MIR SINE MIR 20 149 -59 298 243 93 9 chr3 81899407 81899514 -136137644 - MIR SINE MIR 0 262 147 1729 147 31 35 chr3 81899626 81899912 -136137246 - AluJo SINE Alu -27 285 1 1180 167 181 18 chr3 81901838 81902090 -136135068 - MER63B DNA MER1_type -734 328 24 4458 121 8 20 chr3 81902090 81902733 -136134425 + MER41B LTR ERV1 1 635 0 1180 167 181 18 chr3 81902733 81902762 -136134396 - MER63B DNA MER1_type -1038 24 1 1208 145 0 0 chr3 81902993 81903172 -136133986 - AluSg/x SINE Alu 0 312 134 2193 90 0 14 chr3 81903172 81903460 -136133698 - AluSx SINE Alu -2 310 27 530 239 46 23 chr3 81903606 81903736 -136133422 + L2 LINE L2 3181 3313 0 28 0 0 0 chr3 81903835 81903863 -136133295 + AT_rich Low_complexity Low_complexity 1 28 0 2352 105 0 0 chr3 81903898 81904202 -136132956 - AluSg SINE Alu -6 304 1 986 100 0 8 chr3 81904224 81904354 -136132804 - FLAM_C SINE Alu -14 129 1 350 219 102 31 chr3 81904905 81905033 -136132125 + MIR SINE MIR 14 150 -112 626 249 100 29 chr3 81905076 81905317 -136131841 + MIR SINE MIR 3 260 -2 21 0 0 0 chr3 81905317 81905338 -136131820 + AT_rich Low_complexity Low_complexity 1 21 0 2193 118 0 0 chr3 81905365 81905669 -136131489 + AluSg1 SINE Alu 1 304 -5 296 273 18 27 chr3 81905861 81905971 -136131187 - MIR SINE MIR -46 216 108 183 258 121 30 chr3 81906031 81906097 -136131061 - L3 LINE CR1 -1391 186 115 1802 151 29 35 chr3 81906125 81906436 -136130722 - AluJo SINE Alu -3 309 1 247 206 175 0 chr3 81907324 81907387 -136129771 - L2 LINE L2 -5 3308 3235 335 264 57 9 chr3 81907698 81907804 -136129354 + MIR SINE MIR 35 145 -117 860 172 0 8 chr3 81907908 81908042 -136129116 + AluJo SINE Alu 1 133 -169 191 373 0 17 chr3 81908245 81908304 -136128854 + MIR SINE MIR 32 89 -173 499 261 92 52 chr3 81908312 81908561 -136128597 - L2 LINE L2 0 3313 3055 817 138 6 149 chr3 81908561 81908735 -136128423 + AluJo SINE Alu 137 285 -27 503 295 47 0 chr3 81908740 81908889 -136128269 - L2 LINE L2 -247 3066 2911 1361 82 5 41 chr3 81908910 81909105 -136128053 - AluSg SINE Alu 0 312 125 441 179 0 0 chr3 81909105 81909172 -136127986 - AluSg SINE Alu -241 68 2 840 165 26 100 chr3 81909174 81909290 -136127868 - MER106A DNA MER1_type -21 215 123 2010 134 45 0 chr3 81909290 81909580 -136127578 - AluSx SINE Alu -9 303 1 840 165 26 100 chr3 81909580 81909693 -136127465 - MER106A DNA MER1_type -113 123 3 429 209 360 0 chr3 81909787 81909926 -136127232 + MER5A DNA MER1_type 1 189 0 * 445 289 39 53 chr3 81909926 81910133 -136127025 - L2 LINE L2 -495 2819 2616 347 194 0 0 chr3 81910139 81910211 -136126947 + MIR SINE MIR 128 199 -63 2165 111 17 3 chr3 81910223 81910521 -136126637 + AluSx SINE Alu 1 302 -10 430 138 0 0 chr3 81910521 81910586 -136126572 + L1PA15 LINE L1 5715 5779 -386 7645 50 1 0 chr3 81910586 81912026 -136125132 + L1PA4 LINE L1 4714 6154 -1 2726 123 5 8 chr3 81912026 81912416 -136124742 + L1PA15 LINE L1 5769 6165 0 294 239 0 0 chr3 81912428 81912495 -136124663 + MIR SINE MIR 180 246 -16 669 278 56 10 chr3 81912882 81913080 -136124078 + MIR SINE MIR 23 229 -33 240 77 0 0 chr3 81913160 81913199 -136123959 + L1PA8 LINE L1 6134 6172 0 186 43 0 0 chr3 81913707 81913730 -136123428 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1954 151 38 16 chr3 81913734 81914053 -136123105 - L1PA13 LINE L1 -19 6144 5819 452 315 71 20 chr3 81914084 81914281 -136122877 + MIR SINE MIR 13 219 -43 185 269 45 15 chr3 81914411 81914478 -136122680 + L2 LINE L2 3184 3252 -20 977 226 151 51 chr3 81915187 81915519 -136121639 + MLT1A1 LTR MaLR 1 365 0 1520 84 56 0 chr3 81916230 81916445 -136120713 - L1MA5A LINE L1 -47 6250 6024 310 102 34 0 chr3 81916444 81916503 -136120655 + L1MA5A LINE L1 5977 6037 -260 * 1737 167 3 14 chr3 81916514 81916802 -136120356 - AluJo SINE Alu -19 293 9 2387 107 0 0 chr3 81917128 81917437 -136119721 - AluSx SINE Alu -3 309 1 282 319 0 0 chr3 81917880 81917949 -136119209 + polypurine Low_complexity Low_complexity 1 69 0 363 287 72 51 chr3 81918016 81918211 -136118947 - MIR3 SINE MIR -1 207 9 42859 60 3 1 chr3 81918418 81924551 -136112607 + L1PA5 LINE L1 11 6154 0 518 393 0 6 chr3 81925254 81925437 -136111721 + MIR3 SINE MIR 15 196 -12 23 0 0 0 chr3 81926638 81926661 -136110497 + AT_rich Low_complexity Low_complexity 1 23 0 201 195 0 0 chr3 81927186 81927227 -136109931 + (TG)n Simple_repeat Simple_repeat 1 41 0 24 32 0 0 chr3 81927882 81927913 -136109245 + AT_rich Low_complexity Low_complexity 1 31 0 477 259 25 19 chr3 81928069 81928227 -136108931 + MIR SINE MIR 74 232 -30 2146 116 0 13 chr3 81929300 81929601 -136107557 + AluSx SINE Alu 1 297 -15 3243 62 0 5 chr3 81929734 81930140 -136107018 + MLT2A1 LTR ERVL 1 404 -40 269 180 0 16 chr3 81930140 81930201 -136106957 + (CATATA)n Simple_repeat Simple_repeat 2 61 0 326 109 0 18 chr3 81930201 81930256 -136106902 + MLT2A1 LTR ERVL 400 453 0 404 230 86 75 chr3 81930374 81930548 -136106610 + MLT1K LTR MaLR 411 586 -2 741 203 45 0 chr3 81931803 81931933 -136105225 + MER45A DNA AcHobo 15 150 -28 1315 205 92 54 chr3 81931933 81932021 -136105137 + MSTD LTR MaLR 1 84 -312 1735 183 0 0 chr3 81932021 81932322 -136104836 + AluJb SINE Alu 11 311 0 1315 205 92 54 chr3 81932322 81932602 -136104556 + MSTD LTR MaLR 84 384 -12 307 285 76 0 chr3 81933435 81933563 -136103595 - MIR SINE MIR -65 143 8 3239 205 53 97 chr3 81933711 81934915 -136102243 - L1MC5 LINE L1 -48 7913 6763 2397 210 73 40 chr3 81934996 81935616 -136101542 - L1ME2 LINE L1 -82 6082 5443 932 237 68 20 chr3 81935681 81935930 -136101228 - MIR SINE MIR 0 262 2 1743 113 4 0 chr3 81936014 81936253 -136100905 + AluSg SINE Alu 60 299 -11 575 263 123 33 chr3 81936531 81936774 -136100384 - MLT1L LTR MaLR -8 607 343 878 148 7 22 chr3 81936807 81936942 -136100216 - FLAM_C SINE Alu 0 133 1 2547 64 0 0 chr3 81936950 81937246 -136099912 - AluY SINE Alu -15 296 1 318 277 24 0 chr3 81937293 81937376 -136099782 - MLT1L LTR MaLR -385 230 146 22 0 0 0 chr3 81938424 81938446 -136098712 + AT_rich Low_complexity Low_complexity 1 22 0 464 245 161 62 chr3 81938903 81939059 -136098099 + L1ME LINE L1 5381 5520 -601 1953 135 24 0 chr3 81939059 81939355 -136097803 - AluSx SINE Alu -9 303 1 464 245 161 62 chr3 81939355 81939494 -136097664 + L1ME LINE L1 5520 5644 -477 1855 169 23 7 chr3 81939494 81939618 -136097540 + AluSx SINE Alu 1 121 -191 423 0 0 0 chr3 81939618 81939665 -136097493 + (CA)n Simple_repeat Simple_repeat 2 48 0 1855 169 23 7 chr3 81939665 81939847 -136097311 + AluSx SINE Alu 121 312 0 464 245 161 62 chr3 81939847 81939954 -136097204 + L1ME LINE L1 5644 5824 -297 329 0 26 0 chr3 81940018 81940057 -136097101 - U1 snRNA snRNA -125 40 1 1974 153 10 0 chr3 81940319 81940619 -136096539 - AluJb SINE Alu -4 308 6 23 0 0 0 chr3 81940895 81940918 -136096240 + AT_rich Low_complexity Low_complexity 1 23 0 273 184 11 23 chr3 81940946 81941033 -136096125 + (CATA)n Simple_repeat Simple_repeat 1 86 0 330 273 160 30 chr3 81941235 81941466 -136095692 - L1ME LINE L1 -315 5806 5546 679 266 58 18 chr3 81941648 81941874 -136095284 - MIR SINE MIR -6 256 22 1867 124 0 12 chr3 81942261 81942518 -136094640 - AluJb SINE Alu -58 254 1 205 200 0 0 chr3 81943646 81943686 -136093472 + T-rich Low_complexity Low_complexity 2 41 0 331 355 101 6 chr3 81944295 81944464 -136092694 + L2 LINE L2 2553 2737 -577 * 1476 225 97 83 chr3 81944451 81945332 -136091826 - L2 LINE L2 -1 3312 2406 441 231 43 8 chr3 81945342 81945459 -136091699 + L2 LINE L2 3190 3310 -3 499 343 177 20 chr3 81945461 81945918 -136091240 + L2 LINE L2 2718 3252 -20 2146 113 0 0 chr3 81945939 81946253 -136090905 + AluSx SINE Alu 1 314 0 742 231 56 26 chr3 81946368 81946563 -136090595 - MIR SINE MIR -58 204 4 253 347 60 7 chr3 81946987 81947137 -136090021 + MIR SINE MIR 92 249 -13 1606 171 18 18 chr3 81947147 81947427 -136089731 + AluJo SINE Alu 1 280 -32 186 103 0 0 chr3 81947427 81947456 -136089702 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 607 286 19 19 chr3 81947456 81947662 -136089496 - MIR SINE MIR -24 238 33 363 291 87 23 chr3 81947750 81947922 -136089236 - MIR SINE MIR -74 188 6 957 165 6 19 chr3 81948517 81948884 -136088274 + (TCCA)n Simple_repeat Simple_repeat 1 362 0 394 286 87 87 chr3 81948894 81949146 -136088012 - MIR SINE MIR -5 257 6 23 33 0 0 chr3 81950677 81950707 -136086451 + AT_rich Low_complexity Low_complexity 1 30 0 1439 237 51 48 chr3 81951084 81951361 -136085797 + LTR16A LTR ERVL 52 332 -118 2046 118 3 33 chr3 81951361 81951666 -136085492 - AluSx SINE Alu -6 306 11 1439 237 51 48 chr3 81951666 81951781 -136085377 + LTR16A LTR ERVL 332 445 -5 601 306 101 21 chr3 81951806 81952133 -136085025 + MLT1I LTR MaLR 57 409 0 262 224 184 20 chr3 81952410 81952508 -136084650 + L2 LINE L2 2946 3059 -213 1884 160 3 0 chr3 81952847 81953134 -136084024 - AluJb SINE Alu -24 288 1 1104 171 8 114 chr3 81953248 81953494 -136083664 - MER58A DNA MER1_type -2 222 3 461 289 36 6 chr3 81954012 81954178 -136082980 - MIR SINE MIR -6 256 86 325 205 0 26 chr3 81955507 81955585 -136081573 - MER106A DNA MER1_type 0 236 161 2130 149 0 0 chr3 81955587 81955896 -136081262 - AluSx SINE Alu -3 309 1 1018 113 0 0 chr3 81955898 81956031 -136081127 - AluSq/x SINE Alu -180 133 1 390 222 25 32 chr3 81956042 81956193 -136080965 - MER106B DNA MER1_type -86 973 2 455 262 153 77 chr3 81956200 81956578 -136080580 + MLT1K LTR MaLR 179 585 -3 497 268 139 1 chr3 81956587 81956797 -136080361 - MIR SINE MIR -10 252 19 767 172 49 74 chr3 81957005 81957129 -136080029 - L1MA4 LINE L1 -2 6298 6179 1719 202 0 0 chr3 81957129 81957416 -136079742 - AluJo SINE Alu -25 287 1 767 172 49 74 chr3 81957416 81957494 -136079664 - L1MA4 LINE L1 -121 6179 6101 820 185 8 0 chr3 81957525 81957655 -136079503 - FLAM_A SINE Alu -2 131 1 183 42 0 0 chr3 81959990 81960014 -136077144 + (CA)n Simple_repeat Simple_repeat 2 25 0 23 33 0 0 chr3 81960580 81960610 -136076548 + AT_rich Low_complexity Low_complexity 1 30 0 1316 186 87 14 chr3 81960698 81960973 -136076185 - AluJo SINE Alu -17 295 1 708 237 62 11 chr3 81961901 81962078 -136075080 + MER5A DNA MER1_type 2 187 -2 358 373 51 17 chr3 81962079 81962315 -136074843 + MIR SINE MIR 1 244 -18 1209 138 5 60 chr3 81962410 81962589 -136074569 - L1PB4 LINE L1 -13 6143 5977 2290 91 3 0 chr3 81962589 81962887 -136074271 - AluSg SINE Alu -11 299 1 1209 138 5 60 chr3 81962887 81962925 -136074233 - L1PB4 LINE L1 -179 5977 5938 1170 158 32 41 chr3 81963924 81964145 -136073013 + MER20 DNA MER1_type 1 219 0 2022 157 3 3 chr3 81964167 81964479 -136072679 + AluSx SINE Alu 1 312 0 26 0 0 0 chr3 81964779 81964805 -136072353 + AT_rich Low_complexity Low_complexity 1 26 0 2362 71 0 3 chr3 81964805 81965100 -136072058 - L1PA5 LINE L1 -1 6153 5860 532 254 39 55 chr3 81965336 81965517 -136071641 - MER20B DNA MER1_type -605 178 1 311 169 185 0 chr3 81965534 81965599 -136071559 + L2 LINE L2 3187 3263 -9 379 355 54 27 chr3 81965673 81966042 -136071116 - L2 LINE L2 -5 3267 2889 310 248 16 93 chr3 81967335 81967464 -136069694 - MIR SINE MIR -54 208 90 1554 192 88 34 chr3 81967597 81967951 -136069207 - MLT1A2 LTR MaLR 0 374 2 5693 67 7 10 chr3 81968043 81968755 -136068403 + L1PA8 LINE L1 5460 6169 -3 1986 152 7 0 chr3 81969781 81970078 -136067080 + AluSx SINE Alu 1 299 -13 2335 177 48 9 chr3 81970131 81970566 -136066592 + L1MB8 LINE L1 5378 5829 -345 * 2618 152 90 17 chr3 81970561 81971041 -136066117 + L1MB7 LINE L1 5640 6154 -30 2067 148 25 22 chr3 81971097 81971461 -136065697 + L1MB8 LINE L1 5814 6178 0 240 232 0 0 chr3 81971499 81971555 -136065603 + L1ME4a LINE L1 6064 6119 -2 282 211 124 92 chr3 81971608 81971793 -136065365 + L1ME4a LINE L1 5880 6070 -51 1747 103 28 0 chr3 81971821 81972074 -136065084 - L1MA5A LINE L1 0 6297 6038 467 257 9 0 chr3 81972186 81972291 -136064867 + MER91A DNA MER1_type 1 106 -90 547 358 105 38 chr3 81973147 81973463 -136063695 + L2 LINE L2 2875 3221 -51 419 198 0 12 chr3 81973463 81973544 -136063614 - MADE1 DNA Mariner 0 80 1 547 358 105 38 chr3 81973544 81973599 -136063559 + L2 LINE L2 3221 3271 -1 1521 174 51 37 chr3 81973660 81973954 -136063204 + AluJo SINE Alu 1 298 -14 26 0 0 0 chr3 81974611 81974637 -136062521 + AT_rich Low_complexity Low_complexity 1 26 0 1720 188 3 3 chr3 81975102 81975406 -136061752 - AluJb SINE Alu -8 304 1 575 215 8 8 chr3 81975698 81975819 -136061339 + MLT1L LTR MaLR 147 267 -348 333 317 77 0 chr3 81976080 81976184 -136060974 + L2 LINE L2 3148 3259 -13 240 286 71 18 chr3 81976815 81976927 -136060231 - MIR SINE MIR -29 233 116 286 268 229 11 chr3 82028165 82028354 -136008804 + MIR SINE MIR 29 255 -7 981 221 0 19 chr3 82029785 82029993 -136007165 + MER58A DNA MER1_type 20 223 -1 268 232 0 0 chr3 82030001 82030070 -136007088 + MER103 DNA DNA 17 85 -81 3579 151 21 60 chr3 82030726 82031441 -136005717 + L1MB4 LINE L1 5429 6114 -66 1771 154 11 7 chr3 82031441 82031721 -136005437 - AluJo SINE Alu -31 281 1 3579 151 21 60 chr3 82031721 82031768 -136005390 + L1MB4 LINE L1 6114 6161 -19 290 211 54 24 chr3 82031769 82031935 -136005223 + (TA)n Simple_repeat Simple_repeat 1 171 0 555 89 7 71 chr3 82031954 82032235 -136004923 + (TA)n Simple_repeat Simple_repeat 1 262 0 375 168 21 78 chr3 82032258 82032449 -136004709 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 1639 177 3 11 chr3 82032472 82032755 -136004403 - AluJo SINE Alu -31 281 1 1072 185 5 22 chr3 82033516 82033738 -136003420 - L1ME LINE L1 -597 5569 5352 470 311 40 7 chr3 82034614 82034774 -136002384 - MIR3 SINE MIR -27 181 16 253 203 0 14 chr3 82034805 82034879 -136002279 - L1ME4a LINE L1 -1 6120 6048 435 304 27 7 chr3 82034955 82035103 -136002055 + MIR SINE MIR 2 152 -110 311 347 33 0 chr3 82035112 82035233 -136001925 + MIR SINE MIR 117 241 -21 1076 167 298 0 chr3 82035308 82035536 -136001622 + AluJb SINE Alu 1 296 -6 2056 127 0 3 chr3 82035538 82035877 -136001281 + AluSp SINE Alu 1 313 0 314 289 74 0 chr3 82036415 82036536 -136000622 + MER117 DNA MER1_type 39 168 -29 213 336 8 84 chr3 82036571 82036690 -136000468 - MIR3 SINE MIR -49 159 50 339 296 35 26 chr3 82037182 82037297 -135999861 - L2 LINE L2 0 3313 3198 538 277 133 23 chr3 82037400 82037640 -135999518 + MIR SINE MIR 2 257 -5 1142 212 34 43 chr3 82037837 82038163 -135998995 - MER33 DNA MER1_type 0 324 2 555 166 59 71 chr3 82039330 82039499 -135997659 + pTR5 LTR ERV1 742 908 -1530 3389 162 71 57 chr3 82039599 82040506 -135996652 + LTR12 LTR ERV1 31 2438 0 203 309 0 24 chr3 82040800 82040884 -135996274 + MIR SINE MIR 172 253 -9 550 274 45 29 chr3 82041091 82041336 -135995822 + L1ME4a LINE L1 5537 5785 -336 397 216 112 26 chr3 82041393 82041509 -135995649 + L2 LINE L2 3173 3298 -15 919 189 0 0 chr3 82041635 82041804 -135995354 + MER58B DNA MER1_type 173 341 0 254 29 0 0 chr3 82041883 82041918 -135995240 + L1ME4a LINE L1 6084 6118 -3 219 255 0 0 chr3 82041936 82041987 -135995171 + GA-rich Low_complexity Low_complexity 2 52 0 459 200 96 22 chr3 82042090 82042225 -135994933 + L1ME4a LINE L1 5972 6116 -5 23 0 0 0 chr3 82042474 82042497 -135994661 + AT_rich Low_complexity Low_complexity 1 23 0 353 219 29 36 chr3 82042813 82042950 -135994208 + LTR16C LTR ERVL 354 489 -2 332 338 162 14 chr3 82043102 82043318 -135993840 - L2 LINE L2 -60 3212 2965 216 0 0 0 chr3 82043668 82043692 -135993466 + (A)n Simple_repeat Simple_repeat 1 24 0 793 273 18 35 chr3 82044505 82044732 -135992426 + MIR SINE MIR 30 252 -10 372 259 183 15 chr3 82044829 82044960 -135992198 + L2 LINE L2 3160 3312 -1 223 179 18 54 chr3 82045354 82045410 -135991748 + MIR SINE MIR 93 146 -62 246 313 16 0 chr3 82045424 82045488 -135991670 - MER5A DNA MER1_type 0 189 125 560 210 51 43 chr3 82045502 82045640 -135991518 - MER58B DNA MER1_type -8 333 195 190 229 0 0 chr3 82045785 82045820 -135991338 + MIR3 SINE MIR 153 187 -21 712 167 0 42 chr3 82046196 82046340 -135990818 + FLAM_C SINE Alu 6 143 0 259 106 0 21 chr3 82046342 82046389 -135990769 + FLAM SINE Alu 84 129 -4 321 381 28 0 chr3 82046722 82046903 -135990255 + MER5A DNA MER1_type 4 189 0 431 274 22 0 chr3 82047564 82047699 -135989459 - L1ME2 LINE L1 -9 6155 6018 618 210 132 12 chr3 82047770 82047797 -135989361 + MER5A DNA MER1_type 3 25 -164 180 0 0 0 chr3 82047797 82047817 -135989341 + (CAG)n Simple_repeat Simple_repeat 1 20 0 618 210 132 12 chr3 82047817 82047956 -135989202 + MER5A DNA MER1_type 25 189 0 374 265 74 26 chr3 82048893 82049082 -135988076 + LTR37B LTR ERV1 1 198 -270 1747 221 75 18 chr3 82049120 82049573 -135987585 - MLT1D LTR MaLR 0 505 27 1539 191 36 0 chr3 82049586 82049863 -135987295 - AluJo SINE Alu -25 287 1 526 241 58 19 chr3 82049916 82050177 -135986981 + LTR37B LTR ERV1 197 467 -1 1424 169 25 0 chr3 82050177 82050455 -135986703 + L1MC3 LINE L1 6865 7149 -636 1352 138 24 20 chr3 82050455 82050708 -135986450 + MSTA LTR MaLR 1 254 -174 7556 216 22 11 chr3 82050725 82051088 -135986070 - L1 LINE L1 -1279 4867 4509 1868 165 7 0 chr3 82051088 82051408 -135985750 - AluSx SINE Alu 0 322 1 7556 216 22 11 chr3 82051408 82053011 -135984147 - L1 LINE L1 -1637 4509 2879 363 284 64 64 chr3 82053011 82053407 -135983751 + MLT1J1 LTR MaLR 41 495 -16 299 346 116 15 chr3 82053669 82053912 -135983246 + L2 LINE L2 2811 3083 -189 913 223 80 32 chr3 82053919 82054308 -135982850 - LTR16B LTR ERVL 0 464 1 402 226 54 0 chr3 82054378 82054471 -135982687 + L2 LINE L2 3138 3235 -37 21 82 0 0 chr3 82054493 82054542 -135982616 + AT_rich Low_complexity Low_complexity 1 49 0 511 266 97 0 chr3 82055962 82056086 -135981072 + MIR SINE MIR 49 184 -78 298 120 0 0 chr3 82056212 82056262 -135980896 - L1M4 LINE L1 -3218 2928 2879 352 284 8 52 chr3 82056262 82056396 -135980762 + MLT1J LTR MaLR 42 169 -342 22 35 0 0 chr3 82056660 82056689 -135980469 + AT_rich Low_complexity Low_complexity 1 29 0 817 272 38 10 chr3 82057259 82057551 -135979607 + L1MC4a LINE L1 5663 5964 -157 1621 156 23 45 chr3 82058077 82058385 -135978773 + AluJo SINE Alu 2 302 -10 266 313 42 0 chr3 82058511 82058607 -135978551 + MIR SINE MIR 113 212 -50 1950 146 0 26 chr3 82059512 82059820 -135977338 - AluJo SINE Alu -1 311 12 556 260 24 57 chr3 82060065 82060186 -135976972 + L1MB8 LINE L1 5582 5693 -428 2509 148 39 5 chr3 82060186 82060619 -135976539 + L1MB8 LINE L1 5731 6178 0 556 260 24 57 chr3 82060619 82060743 -135976415 + L1MB8 LINE L1 5693 5819 -302 350 217 160 25 chr3 82060949 82061109 -135976049 - MIR SINE MIR -10 252 73 7891 43 0 0 chr3 82061226 82062159 -135974999 - L1PA5 LINE L1 -4 6150 5218 563 248 157 56 chr3 82062272 82062628 -135974530 - L1M4 LINE L1 -1104 5042 4619 1962 135 7 17 chr3 82062628 82062924 -135974234 + AluSx SINE Alu 1 293 -19 563 248 157 56 chr3 82062924 82063071 -135974087 - L1M4 LINE L1 -1527 4619 4488 289 371 58 39 chr3 82063157 82063362 -135973796 + L2 LINE L2 2686 2894 -420 914 317 71 20 chr3 82063407 82063814 -135973344 + L2 LINE L2 2884 3311 -2 1812 170 38 0 chr3 82064198 82064487 -135972671 - AluJo SINE Alu -12 300 1 406 309 72 14 chr3 82064532 82064671 -135972487 - MER5A DNA MER1_type -41 148 2 196 204 68 0 chr3 82064952 82064996 -135972162 + MIR3 SINE MIR 112 158 -50 2380 213 38 98 chr3 82064996 82065711 -135971447 + MER21B LTR ERV1 1 672 -191 3054 135 64 75 chr3 82065728 82066430 -135970728 + LTR8A LTR ERV1 34 727 0 481 168 67 107 chr3 82066432 82066581 -135970577 + MER21B LTR ERV1 673 815 -48 940 325 112 10 chr3 82067601 82068122 -135969036 + L2 LINE L2 2727 3313 0 180 0 0 0 chr3 82068128 82068148 -135969010 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1757 171 4 4 chr3 82068150 82068431 -135968727 - AluSg SINE Alu -29 281 1 1978 144 10 3 chr3 82068437 82068736 -135968422 - AluSx SINE Alu -11 301 1 538 187 17 29 chr3 82069523 82069658 -135967500 - L1ME1 LINE L1 -4 6330 6042 * 1742 239 17 59 chr3 82069654 82070131 -135967027 - L1ME1 LINE L1 0 6156 5693 2287 109 0 0 chr3 82070131 82070435 -135966723 - AluSx SINE Alu -8 304 1 1742 239 17 59 chr3 82070435 82070536 -135966622 - L1ME1 LINE L1 -463 5693 5589 530 213 39 16 chr3 82070771 82070898 -135966260 - MER94 DNA DNA -3 131 2 231 299 13 0 chr3 82070930 82071007 -135966151 - MIR SINE MIR -12 250 173 959 295 31 31 chr3 82071027 82071417 -135965741 - LTR16C LTR ERVL -3 488 99 461 261 50 17 chr3 82071500 82071619 -135965539 - MIR SINE MIR -125 137 15 695 201 36 52 chr3 82072080 82072274 -135964884 - L1ME2 LINE L1 -64 6100 5910 440 284 96 37 chr3 82072469 82072687 -135964471 - MIR SINE MIR -12 250 20 189 306 24 47 chr3 82073062 82073147 -135964011 - L2 LINE L2 -7 3306 3224 1927 241 57 41 chr3 82073579 82074035 -135963123 + L1MC5 LINE L1 7117 7564 -397 2343 91 0 0 chr3 82074035 82074331 -135962827 + AluY SINE Alu 3 298 -13 1927 241 57 41 chr3 82074331 82074402 -135962756 + L1MC5 LINE L1 7564 7632 -329 7270 63 0 0 chr3 82074402 82075395 -135961763 - L1PA6 LINE L1 -11 6143 5145 1927 241 57 41 chr3 82075395 82075672 -135961486 + L1MC5 LINE L1 7632 7935 -26 1757 161 13 23 chr3 82075691 82075996 -135961162 - AluJb SINE Alu -10 302 1 189 292 0 79 chr3 82076300 82076389 -135960769 - MIR SINE MIR -180 82 1 473 293 32 6 chr3 82076507 82076664 -135960494 + MIR SINE MIR 37 197 -65 227 307 53 0 chr3 82076947 82077022 -135960136 + MLT1K LTR MaLR 469 547 -41 280 245 101 36 chr3 82077155 82077294 -135959864 - L1MC5 LINE L1 -32 7929 7782 531 267 151 56 chr3 82077340 82077885 -135959273 + MLT1L LTR MaLR 1 563 -25 282 175 12 62 chr3 82077977 82078057 -135959101 - MLT1J LTR MaLR -30 481 406 506 234 125 8 chr3 82078111 82078239 -135958919 - MLT1J LTR MaLR -358 153 11 1831 201 58 41 chr3 82079419 82079836 -135957322 - MER65C LTR ERV1 -37 424 1 375 381 35 12 chr3 82080194 82080367 -135956791 + MIR SINE MIR 31 207 -55 1208 116 5 30 chr3 82081560 82081758 -135955400 - MER61E LTR ERV1 0 569 377 246 62 0 0 chr3 82081916 82081948 -135955210 + (T)n Simple_repeat Simple_repeat 1 32 0 403 338 77 70 chr3 82083707 82083979 -135953179 - L2 LINE L2 0 3272 2999 328 287 19 9 chr3 82084030 82084138 -135953020 + MIR SINE MIR 78 186 -76 45127 38 2 2 chr3 82084200 82090359 -135946799 - L1PA3 LINE L1 0 6155 2 258 280 78 111 chr3 82090434 82090820 -135946338 - MLT1K LTR MaLR -8 580 208 285 174 0 81 chr3 82091448 82091534 -135945624 + GA-rich Low_complexity Low_complexity 3 81 0 650 285 120 19 chr3 82091731 82092156 -135945002 - MER113 DNA MER1_type? -11 510 43 303 185 138 0 chr3 82093372 82093437 -135943721 - MER52A LTR ERV1 0 1755 1682 * 4126 202 21 88 chr3 82093427 82094649 -135942509 - MER52A LTR ERV1 -559 1196 56 273 269 0 0 chr3 82094846 82094913 -135942245 - MER52A LTR ERV1 -1688 67 1 319 201 14 181 chr3 82095164 82095219 -135941939 - Charlie8 DNA MER1_type -2297 120 102 1329 158 14 5 chr3 82095219 82095441 -135941717 - L1PB1 LINE L1 0 6151 5928 319 201 14 181 chr3 82095441 82095529 -135941629 - Charlie8 DNA MER1_type -2315 102 1 3151 117 91 36 chr3 82095779 82096308 -135940850 + LTR64 LTR ERVK 1 558 0 514 143 19 9 chr3 82097022 82097127 -135940031 + GA-rich Low_complexity Low_complexity 1 106 0 2414 189 33 31 chr3 82097405 82097615 -135939543 + L1M4 LINE L1 4817 5025 -1121 2188 112 27 0 chr3 82097615 82097911 -135939247 + AluSg SINE Alu 1 304 -6 2414 189 33 31 chr3 82097911 82098271 -135938887 + L1M4 LINE L1 5025 5388 -758 279 162 26 26 chr3 82098273 82098390 -135938768 + (TA)n Simple_repeat Simple_repeat 2 118 0 4289 175 32 25 chr3 82098390 82099260 -135937898 + L1MB8 LINE L1 5302 6177 -1 380 277 105 96 chr3 82099431 82099763 -135937395 + L2 LINE L2 2892 3226 -87 182 146 0 24 chr3 82100342 82100383 -135936775 + (GAAA)n Simple_repeat Simple_repeat 1 40 0 337 309 49 0 chr3 82100591 82100714 -135936444 + L2 LINE L2 3184 3312 -1 1327 191 8 38 chr3 82100805 82101067 -135936091 - AluJo SINE Alu -58 254 1 2330 104 3 0 chr3 82101497 82101805 -135935353 + AluSq SINE Alu 1 309 -4 474 188 0 0 chr3 82101805 82101901 -135935257 + G-rich Low_complexity Low_complexity 3 98 0 474 214 220 35 chr3 82102428 82102601 -135934557 + MIR SINE MIR 2 206 -56 995 298 151 16 chr3 82103203 82103486 -135933672 + MLT1K LTR MaLR 94 337 -251 663 57 0 0 chr3 82103486 82103574 -135933584 + (GA)n Simple_repeat Simple_repeat 1 88 0 995 298 151 16 chr3 82103574 82103726 -135933432 + MLT1K LTR MaLR 337 588 0 874 290 75 30 chr3 82103877 82104212 -135932946 + MLT1I LTR MaLR 60 409 0 234 62 0 0 chr3 82104454 82104486 -135932672 + (TAA)n Simple_repeat Simple_repeat 3 34 0 1171 169 0 0 chr3 82104606 82104772 -135932386 - FAM SINE Alu -9 166 1 180 77 0 0 chr3 82105327 82105353 -135931805 + (GA)n Simple_repeat Simple_repeat 1 26 0 207 325 34 43 chr3 82105588 82105705 -135931453 - MIR SINE MIR -100 162 47 789 333 184 16 chr3 82105705 82106446 -135930712 - L2 LINE L2 0 3313 2429 218 79 0 26 chr3 82106564 82106602 -135930556 + (GA)n Simple_repeat Simple_repeat 2 38 0 582 263 55 55 chr3 82107389 82107697 -135929461 - LTR33 LTR ERVL -53 468 161 1246 93 134 69 chr3 82108017 82108233 -135928925 - MER30 DNA MER1_type 0 230 1 201 209 0 23 chr3 82108273 82108316 -135928842 + MIR SINE MIR 1 42 -220 310 263 53 0 chr3 82108316 82108392 -135928766 + MIR SINE MIR 159 238 -24 9232 41 0 0 chr3 82108451 82109546 -135927612 + L1P LINE L1 4023 5117 -1029 825 324 46 21 chr3 82109821 82110400 -135926758 + L2 LINE L2 2579 3272 0 650 294 72 48 chr3 82110564 82110979 -135926179 - MLT1J2 LTR MaLR -13 437 13 416 262 77 38 chr3 82111130 82111313 -135925845 - LTR50 LTR ERVL -603 192 3 307 260 93 40 chr3 82112039 82112189 -135924969 - MLT1J LTR MaLR -353 158 1 241 277 10 70 chr3 82112616 82112832 -135924326 - MIR SINE MIR 0 262 16 887 223 137 56 chr3 82112974 82113347 -135923811 - MLT1J LTR MaLR -108 403 1 1889 159 0 23 chr3 82114061 82114370 -135922788 - AluJb SINE Alu -10 302 1 1642 271 41 37 chr3 82114394 82114881 -135922277 + LTR16C LTR ERVL 3 491 0 556 339 31 4 chr3 82114940 82115167 -135921991 + MIR SINE MIR 24 256 -6 457 264 0 33 chr3 82115178 82115299 -135921859 - MIR SINE MIR -114 148 32 407 266 0 0 chr3 82116119 82116198 -135920960 - MER81 DNA DNA -33 81 3 484 103 0 23 chr3 82116637 82116724 -135920434 + (TTCC)n Simple_repeat Simple_repeat 4 88 0 210 171 0 0 chr3 82116718 82116759 -135920399 + CT-rich Low_complexity Low_complexity 1 41 0 * 1782 190 0 3 chr3 82116766 82117077 -135920081 - AluJb SINE Alu -2 310 1 1301 277 95 37 chr3 82117085 82117547 -135919611 - LTR16C LTR ERVL -2 489 1 807 294 19 0 chr3 82117579 82117793 -135919365 - Charlie8 DNA MER1_type -2198 219 2 395 322 33 7 chr3 82117795 82117947 -135919211 - MIR3 SINE MIR -49 159 4 713 294 57 4 chr3 82118123 82118351 -135918807 - MIR SINE MIR -21 241 2 819 260 9 39 chr3 82118415 82118602 -135918556 + MER58A DNA MER1_type 1 181 -2239 2369 159 35 42 chr3 82118602 82119036 -135918122 + MSTB1 LTR MaLR 1 431 -1 819 260 9 39 chr3 82119036 82119079 -135918079 + MER58A DNA MER1_type 181 224 0 221 326 160 33 chr3 82119422 82119603 -135917555 + MIR SINE MIR 23 226 -36 702 265 111 26 chr3 82121721 82121955 -135915203 + MIR SINE MIR 8 261 -1 560 134 52 0 chr3 82122409 82122506 -135914652 + MER5A DNA MER1_type 11 112 -77 318 259 27 9 chr3 82122555 82122667 -135914491 + MER113 DNA MER1_type? 1 114 -407 275 231 15 0 chr3 82122806 82122871 -135914287 + MER113 DNA MER1_type? 454 519 -2 227 284 226 7 chr3 82122982 82123137 -135914021 + MIR3 SINE MIR 19 207 -1 * 306 304 146 62 chr3 82123120 82123360 -135913798 + MIR SINE MIR 3 262 0 721 309 16 16 chr3 82123387 82123633 -135913525 - MIR SINE MIR 0 262 17 334 283 54 42 chr3 82123676 82123842 -135913316 + MIR SINE MIR 63 230 -32 1821 173 0 10 chr3 82125154 82125455 -135911703 - AluJb SINE Alu -10 302 5 234 125 0 0 chr3 82125536 82125568 -135911590 + MER94 DNA DNA 1 32 -102 412 277 99 60 chr3 82126426 82126708 -135910450 + MLT1K LTR MaLR 222 514 -74 378 282 165 11 chr3 82126823 82127011 -135910147 + MER112 DNA MER1_type 1 217 -43 195 42 0 0 chr3 82128252 82128276 -135908882 + (TG)n Simple_repeat Simple_repeat 2 25 0 1842 122 0 11 chr3 82128319 82128590 -135908568 + AluSx SINE Alu 1 268 -44 25 0 0 0 chr3 82128719 82128744 -135908414 + AT_rich Low_complexity Low_complexity 1 25 0 2302 86 3 3 chr3 82128744 82129048 -135908110 + AluSg SINE Alu 1 304 -6 225 0 0 0 chr3 82129048 82129073 -135908085 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 288 0 0 0 chr3 82129072 82129104 -135908054 + (CA)n Simple_repeat Simple_repeat 2 33 0 213 289 181 0 chr3 82129186 82129269 -135907889 + MIR SINE MIR 17 114 -148 181 231 0 0 chr3 82129313 82129352 -135907806 + MIR SINE MIR 204 242 -20 21 57 0 0 chr3 82130525 82130560 -135906598 + GC_rich Low_complexity Low_complexity 1 35 0 212 98 0 49 chr3 82131118 82131159 -135905999 + (GGGA)n Simple_repeat Simple_repeat 1 39 0 241 209 209 35 chr3 82131573 82131659 -135905499 - MIR SINE MIR -110 152 52 230 293 0 0 chr3 82132056 82132114 -135905044 + CT-rich Low_complexity Low_complexity 3 60 0 187 256 0 0 chr3 82132349 82132388 -135904770 - MIR SINE MIR -3 259 221 197 265 0 0 chr3 82132471 82132520 -135904638 + L2 LINE L2 3151 3199 -73 318 306 3 3 chr3 82132566 82132685 -135904473 - MIR SINE MIR -62 146 28 699 281 0 0 chr3 82133125 82133292 -135903866 + MIR SINE MIR 96 262 0 40 49 0 0 chr3 82133335 82133396 -135903762 + AT_rich Low_complexity Low_complexity 1 61 0 404 273 52 52 chr3 82133485 82133657 -135903501 + MER5B DNA MER1_type 7 178 0 203 51 26 51 chr3 82133827 82133866 -135903292 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 42 36 0 0 chr3 82134160 82134216 -135902942 + AT_rich Low_complexity Low_complexity 1 56 0 2177 129 0 0 chr3 82134254 82134556 -135902602 - AluSx SINE Alu -10 302 1 501 251 54 18 chr3 82134972 82135152 -135902006 - MIR SINE MIR -44 218 33 354 206 55 0 chr3 82135794 82135867 -135901291 - MER116 DNA Mariner -3 77 1 247 204 347 10 chr3 82136332 82136430 -135900728 + Charlie8 DNA MER1_type 2 132 -2285 420 259 63 78 chr3 82136805 82136860 -135900298 - MIR3 SINE MIR -3 205 151 764 227 82 122 chr3 82136860 82137212 -135899946 - MER102b DNA MER1_type -3 338 1 420 259 63 78 chr3 82137212 82137361 -135899797 - MIR3 SINE MIR -57 151 4 308 300 52 62 chr3 82138078 82138288 -135898870 - L1MC4a LINE L1 -1756 6052 5845 204 97 0 0 chr3 82138305 82138336 -135898822 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 910 215 33 19 chr3 82139003 82139217 -135897941 - MER20 DNA MER1_type -1 218 2 235 287 53 53 chr3 82139323 82139417 -135897741 + MIR SINE MIR 20 113 -95 442 295 235 20 chr3 82140119 82140421 -135896737 + L2 LINE L2 2944 3310 -3 277 336 45 18 chr3 82140423 82140533 -135896625 + L2 LINE L2 2965 3077 -195 1049 210 5 45 chr3 82140583 82140807 -135896351 + MER20 DNA MER1_type 4 218 -1 1072 210 5 27 chr3 82142410 82142634 -135894524 + MER20 DNA MER1_type 1 219 0 631 251 179 29 chr3 82143205 82143512 -135893646 - LTR16A1 LTR ERVL -2 455 103 333 309 244 13 chr3 82143683 82143913 -135893245 - L2 LINE L2 -2 3270 2988 2144 144 17 23 chr3 82144508 82144854 -135892304 + MER2 DNA MER2_type 1 344 0 1243 239 10 46 chr3 82145118 82145424 -135891734 - MER102b DNA MER1_type -40 301 7 789 253 20 63 chr3 82146381 82146634 -135890524 - MIR SINE MIR -1 261 20 2000 125 39 0 chr3 82146970 82147249 -135889909 + AluSq SINE Alu 1 290 -23 438 101 0 0 chr3 82147250 82147319 -135889839 + (TA)n Simple_repeat Simple_repeat 2 70 0 2101 161 26 11 chr3 82147775 82148123 -135889035 + MLT1A1 LTR MaLR 1 353 -12 215 250 53 0 chr3 82148463 82148539 -135888619 - MIR SINE MIR -1 261 182 811 189 92 101 chr3 82148593 82148831 -135888327 + MER106B DNA MER1_type 1 1059 0 2287 80 13 25 chr3 82148887 82149201 -135887957 - AluY SINE Alu -1 310 1 351 287 44 72 chr3 82149458 82149639 -135887519 - MIR SINE MIR -76 186 11 606 266 80 31 chr3 82149711 82149937 -135887221 + Charlie8 DNA MER1_type 38 274 -2143 392 308 0 8 chr3 82151127 82151247 -135885911 - MER5B DNA MER1_type -36 142 24 274 333 128 21 chr3 82151395 82151629 -135885529 - MIR SINE MIR -1 261 3 265 254 0 16 chr3 82151956 82152019 -135885139 + MLT1K LTR MaLR 189 250 -338 1378 286 83 21 chr3 82152533 82153061 -135884097 - MLT1K LTR MaLR -11 577 17 813 172 6 94 chr3 82153188 82153368 -135883790 - AluJo SINE Alu -31 281 118 1562 180 40 0 chr3 82154138 82154416 -135882742 + AluJo SINE Alu 1 289 -23 351 281 42 93 chr3 82154483 82154563 -135882595 + L2 LINE L2 2038 2121 -1193 2232 125 3 0 chr3 82154563 82154874 -135882284 - AluSq SINE Alu -1 312 1 351 281 42 93 chr3 82154874 82155146 -135882012 + L2 LINE L2 2121 2372 -942 2052 134 7 3 chr3 82155408 82155699 -135881459 + AluSx SINE Alu 7 298 -14 437 230 58 0 chr3 82155707 82155794 -135881364 - MER58 DNA MER1_type -122 93 2 626 328 59 53 chr3 82155812 82156267 -135880891 + L2 LINE L2 2804 3261 -11 238 290 112 28 chr3 82157144 82157251 -135879907 - MIR3 SINE MIR -7 201 86 699 312 24 16 chr3 82158482 82158729 -135878429 - MIR SINE MIR -13 249 1 426 284 216 10 chr3 82159199 82159393 -135877765 + MIR SINE MIR 29 262 0 362 389 39 27 chr3 82159397 82159654 -135877504 + L2 LINE L2 3000 3259 -13 506 235 26 13 chr3 82160011 82160164 -135876994 - L1MC5 LINE L1 -44 7917 7763 325 223 160 11 chr3 82160264 82160358 -135876800 - L2 LINE L2 0 3272 3165 932 188 71 27 chr3 82160495 82160838 -135876320 + MSTD LTR MaLR 1 396 0 645 341 47 11 chr3 82160839 82161019 -135876139 - L2 LINE L2 -255 3058 2886 1077 210 62 45 chr3 82161019 82161438 -135875720 - LTR37A LTR ERV1 0 426 1 645 341 47 11 chr3 82161438 82161669 -135875489 - L2 LINE L2 -427 2886 2638 450 159 0 28 chr3 82161680 82161787 -135875371 - LTR37A LTR ERV1 0 426 323 207 279 106 10 chr3 82161789 82161893 -135875265 - L2 LINE L2 -696 2618 2505 265 259 84 70 chr3 82162453 82162596 -135874562 - MIR3 SINE MIR -62 146 2 756 187 102 21 chr3 82162638 82162825 -135874333 + MER3 DNA MER1_type 1 202 -7 433 214 12 0 chr3 82162918 82163002 -135874156 - FLAM_A SINE Alu -57 85 1 297 0 0 0 chr3 82163017 82163050 -135874108 + (TTA)n Simple_repeat Simple_repeat 3 35 0 19776 41 2 2 chr3 82163050 82166283 -135870875 - L1PA5 LINE L1 -18 6136 2901 1149 115 0 0 chr3 82166283 82166465 -135870693 - L1P LINE L1 -5964 182 1 417 412 40 4 chr3 82166490 82166718 -135870440 - MIR SINE MIR -3 259 24 2062 134 3 0 chr3 82167030 82167329 -135869829 - AluSx SINE Alu -12 300 1 414 0 0 0 chr3 82168926 82168972 -135868186 + (CA)n Simple_repeat Simple_repeat 2 47 0 34 55 0 0 chr3 82169287 82169342 -135867816 + AT_rich Low_complexity Low_complexity 1 55 0 183 188 31 0 chr3 82169631 82169663 -135867495 - MER5B DNA MER1_type 0 178 146 263 250 9 0 chr3 82169864 82169980 -135867178 + (TA)n Simple_repeat Simple_repeat 1 117 0 923 294 78 13 chr3 82170062 82170436 -135866722 - MLT1J2 LTR MaLR -14 436 39 211 194 0 0 chr3 82170613 82170649 -135866509 + CT-rich Low_complexity Low_complexity 2 37 0 207 224 8 136 chr3 82170788 82170913 -135866245 - L2 LINE L2 -222 3050 2942 711 278 0 33 chr3 82171946 82172158 -135865000 + MIR SINE MIR 57 261 -1 1465 154 48 33 chr3 82173819 82174149 -135863009 + L1MA9 LINE L1 5977 6311 -1 342 274 36 55 chr3 82174507 82174726 -135862432 + L1M4 LINE L1 16 230 -6629 251 329 39 7 chr3 82175029 82175184 -135861974 + L1M4 LINE L1 1029 1188 -5667 1286 244 38 24 chr3 82175221 82175798 -135861360 + L1M4 LINE L1 1206 1785 -5070 * 1307 111 19 0 chr3 82175793 82176000 -135861158 + L1MA8 LINE L1 5593 5803 -488 1134 133 17 43 chr3 82176022 82176256 -135860902 + L1MA8 LINE L1 5909 6136 -155 426 177 0 0 chr3 82176266 82176345 -135860813 + L1M4 LINE L1 4570 4648 -2309 264 247 75 11 chr3 82176399 82176492 -135860666 - LTR67 LTR ERVL -1 556 458 2196 123 3 3 chr3 82176539 82176848 -135860310 + AluSc SINE Alu 1 309 0 749 255 89 4 chr3 82180668 82180927 -135856231 - L1ME3 LINE L1 0 6162 5882 777 314 95 26 chr3 82181117 82181582 -135855576 - L2 LINE L2 0 3313 2817 1613 171 25 18 chr3 82181785 82182060 -135855098 - AluJo SINE Alu -30 282 6 414 191 13 132 chr3 82182247 82182399 -135854759 - MER97a DNA MER1_type? -721 173 40 24 53 0 0 chr3 82182546 82182584 -135854574 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr3 82182654 82182677 -135854481 + AT_rich Low_complexity Low_complexity 1 23 0 431 56 69 56 chr3 82182741 82182813 -135854345 - Charlie1 DNA MER1_type 0 2761 2689 1679 169 38 0 chr3 82182835 82183125 -135854033 + AluSx SINE Alu 1 301 -11 640 255 102 0 chr3 82183157 82183353 -135853805 - Charlie1 DNA MER1_type -2545 216 1 2156 113 0 41 chr3 82185148 82185467 -135851691 - AluSx SINE Alu -6 306 1 424 213 48 53 chr3 82185678 82185885 -135851273 + L1MC5 LINE L1 6986 7191 -770 319 287 65 0 chr3 82185942 82186050 -135851108 + L1MC4 LINE L1 7353 7467 -575 1510 145 125 8 chr3 82186072 82186342 -135850816 + AluSg1 SINE Alu 3 301 0 1479 216 77 32 chr3 82186349 82186812 -135850346 + L1ME1 LINE L1 5448 5932 -230 2249 136 0 0 chr3 82186812 82187122 -135850036 + AluSx SINE Alu 1 310 -2 1259 170 19 46 chr3 82187650 82187815 -135849343 - AluJo SINE Alu -39 273 116 2269 109 0 0 chr3 82187815 82188118 -135849040 + AluSx SINE Alu 1 303 -9 1259 170 19 46 chr3 82188118 82188211 -135848947 - AluJo SINE Alu -196 116 22 248 319 11 11 chr3 82188280 82188371 -135848787 - L2 LINE L2 0 3272 3182 841 239 54 58 chr3 82188427 82188634 -135848524 - MIR SINE MIR -3 259 52 3139 189 23 15 chr3 82188634 82189290 -135847868 + L1MB5 LINE L1 5514 6174 0 841 239 54 58 chr3 82189290 82189341 -135847817 - MIR SINE MIR -210 52 2 274 311 101 32 chr3 82189381 82189465 -135847693 - L2 LINE L2 -210 3062 2985 270 0 0 0 chr3 82189465 82189495 -135847663 + (TG)n Simple_repeat Simple_repeat 1 30 0 207 0 0 0 chr3 82189494 82189517 -135847641 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 274 311 101 32 chr3 82189495 82189651 -135847507 - L2 LINE L2 -287 2985 2829 1201 286 21 26 chr3 82189965 82190391 -135846767 + LTR16C LTR ERVL 33 491 0 407 183 32 0 chr3 82190427 82190520 -135846638 - LTR33A LTR ERVL -3 520 425 916 260 25 5 chr3 82190813 82191017 -135846141 - MER63A DNA MER1_type -1 209 2 2843 219 51 42 chr3 82191717 82192575 -135844583 + Charlie1a DNA MER1_type 110 975 -480 315 209 0 35 chr3 82192693 82192779 -135844379 - MLT1H LTR MaLR -459 90 8 469 217 57 108 chr3 82192892 82193206 -135843952 - MLT1K LTR MaLR -19 569 272 253 270 22 56 chr3 82193261 82193350 -135843808 + L3b LINE CR1 1488 1573 -10 268 271 14 14 chr3 82194040 82194110 -135843048 - L2 LINE L2 -1 3271 3202 401 309 88 11 chr3 82195105 82195286 -135841872 + MIR SINE MIR 20 214 -48 2547 71 0 0 chr3 82195472 82195782 -135841376 - AluY SINE Alu -1 310 1 340 270 12 117 chr3 82196848 82197011 -135840147 + MIR SINE MIR 9 154 -108 417 261 82 110 chr3 82197149 82197275 -135839883 + MLT1K LTR MaLR 184 312 -276 347 284 88 10 chr3 82197275 82197377 -135839781 - MER81 DNA DNA 0 114 5 2210 127 33 30 chr3 82197377 82197740 -135839418 + THE1B LTR MaLR 1 364 0 11488 92 11 11 chr3 82197740 82199320 -135837838 + THE1B-int LTR MaLR 1 1580 0 1472 361 22 33 chr3 82199320 82199688 -135837470 + THE1B LTR MaLR 1 364 0 417 261 82 110 chr3 82199688 82199975 -135837183 + MLT1K LTR MaLR 308 588 0 693 162 158 9 chr3 82200321 82200549 -135836609 - LTR54B LTR ERV1 -2 496 235 264 220 17 0 chr3 82200549 82200608 -135836550 - MER112 DNA MER1_type -199 61 2 422 267 143 0 chr3 82202551 82202712 -135834446 + MER63A DNA MER1_type 1 184 -26 1723 92 4 0 chr3 82202822 82203051 -135834107 - MER30 DNA MER1_type 0 230 1 189 292 92 0 chr3 82203613 82203678 -135833480 - L2 LINE L2 0 3272 3202 972 25 0 0 chr3 82203685 82203803 -135833355 + L1PA2 LINE L1 6036 6153 -2 29 0 0 0 chr3 82203821 82203850 -135833308 + AT_rich Low_complexity Low_complexity 1 29 0 4109 127 54 15 chr3 82204286 82205021 -135832137 - L1MA5 LINE L1 -2 6298 5535 699 319 87 6 chr3 82205112 82205444 -135831714 + LTR16A LTR ERVL 86 444 -6 201 189 27 0 chr3 82205473 82205510 -135831648 - MIR SINE MIR -109 153 116 738 210 33 6 chr3 82205598 82205779 -135831379 - L1MC3 LINE L1 -674 7111 6926 2293 15 48 4 chr3 82205964 82206235 -135830923 - AluYa5 SINE Alu -28 283 1 232 320 177 35 chr3 82206235 82206438 -135830720 - L3 LINE CR1 -138 1439 1208 795 231 6 0 chr3 82206441 82206610 -135830548 + MER5A DNA MER1_type 1 170 -19 424 311 206 0 chr3 82207088 82207297 -135829861 - MIR SINE MIR -6 256 5 1214 242 56 16 chr3 82207316 82207843 -135829315 - MLT1E LTR MaLR 0 593 11 458 266 22 54 chr3 82207844 82208028 -135829130 - MER5A DNA MER1_type -8 181 4 364 295 18 9 chr3 82208365 82208477 -135828681 + MER81 DNA DNA 1 113 -1 1473 240 86 27 chr3 82208636 82209111 -135828047 + MLT1D LTR MaLR 3 505 0 279 239 28 0 chr3 82209145 82209216 -135827942 - LTR67 LTR ERVL -4 553 481 837 196 10 62 chr3 82209709 82209903 -135827255 + MER5A DNA MER1_type 6 189 0 253 367 85 45 chr3 82209957 82210156 -135827002 + L2 LINE L2 2550 2756 -558 18171 154 34 10 chr3 82210188 82217123 -135820035 + L1MA2 LINE L1 461 7588 -135 2816 16 0 6 chr3 82217123 82217443 -135819715 + AluYb8 SINE Alu 1 318 0 18171 154 34 10 chr3 82217443 82217583 -135819575 + L1MA2 LINE L1 7588 7723 0 243 0 0 0 chr3 82218338 82218365 -135818793 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 388 271 13 110 chr3 82218705 82218941 -135818217 + L1MC5 LINE L1 7696 7908 -53 277 30 0 0 chr3 82218941 82218974 -135818184 - U2 snRNA snRNA -155 33 1 536 265 171 6 chr3 82219014 82219195 -135817963 + MIR SINE MIR 21 231 -31 1206 148 0 0 chr3 82219370 82219552 -135817606 + AluSq SINE Alu 131 312 -1 3072 128 4 22 chr3 82219810 82220308 -135816850 - L1PA15 LINE L1 0 6165 5677 35196 91 11 7 chr3 82220311 82226425 -135810733 - L1PA6 LINE L1 -1 6153 11 5313 178 23 13 chr3 82226427 82227979 -135809179 - L1PA15 LINE L1 -473 5692 4125 1822 217 126 0 chr3 82228111 82228150 -135809008 - MLT2B1 LTR ERVL 0 520 487 320 43 22 0 chr3 82228150 82228196 -135808962 + (TG)n Simple_repeat Simple_repeat 2 48 0 1822 217 126 0 chr3 82228196 82228616 -135808542 - MLT2B1 LTR ERVL -33 487 3 5595 183 25 2 chr3 82228813 82229369 -135807789 + L1PA13 LINE L1 4106 4648 -1515 2287 102 0 0 chr3 82229369 82229663 -135807495 + AluSc SINE Alu 1 294 -15 5595 183 25 2 chr3 82229663 82230206 -135806952 + L1PA13 LINE L1 4648 5177 -986 1972 136 0 7 chr3 82230206 82230527 -135806631 + AluSx SINE Alu 1 319 0 5595 183 25 2 chr3 82230527 82231481 -135805677 + L1PA13 LINE L1 5177 6163 0 234 251 193 64 chr3 82231608 82231779 -135805379 + MIR SINE MIR 58 250 -12 755 178 166 0 chr3 82233195 82233410 -135803748 + AluJb SINE Alu 88 330 0 278 267 57 28 chr3 82233415 82233591 -135803567 + L1ME4a LINE L1 5602 5782 -339 25 65 0 0 chr3 82233619 82233665 -135803493 + AT_rich Low_complexity Low_complexity 1 46 0 260 262 66 8 chr3 82233769 82233891 -135803267 + L1ME4a LINE L1 5987 6115 -6 3422 92 17 0 chr3 82234064 82234545 -135802613 + L1PB3 LINE L1 5666 6154 0 1345 204 74 14 chr3 82234802 82235087 -135802071 - AluJo SINE Alu -10 302 1 436 343 102 9 chr3 82235219 82235435 -135801723 - MIR SINE MIR -13 249 14 204 226 0 0 chr3 82236479 82236532 -135800626 + (TA)n Simple_repeat Simple_repeat 2 54 0 494 353 78 64 chr3 82237084 82237660 -135799498 + L2 LINE L2 2678 3271 -1 264 91 0 0 chr3 82237951 82237995 -135799163 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 525 327 56 9 chr3 82238988 82239202 -135797956 - MIR SINE MIR -10 252 29 264 305 116 0 chr3 82239269 82239364 -135797794 - L2 LINE L2 0 3313 3208 2607 126 13 46 chr3 82239491 82239951 -135797207 + MER65A LTR ERV1 1 445 0 583 276 114 14 chr3 82239951 82240161 -135796997 - MIR SINE MIR -21 241 11 481 286 98 25 chr3 82240275 82240478 -135796680 - MIR SINE MIR -17 245 28 225 0 0 0 chr3 82240714 82240739 -135796419 + (TG)n Simple_repeat Simple_repeat 1 25 0 292 286 35 137 chr3 82241102 82241162 -135795996 - MIR SINE MIR -12 250 186 1427 202 50 41 chr3 82241162 82241524 -135795634 + MLT1A1 LTR MaLR 1 365 0 292 286 35 137 chr3 82241524 82241690 -135795468 - MIR SINE MIR -76 186 47 916 169 19 6 chr3 82242054 82242214 -135794944 + FRAM SINE Alu 1 162 -4 2241 123 0 0 chr3 82242214 82242516 -135794642 + AluSx SINE Alu 1 302 -10 223 299 118 24 chr3 82243133 82243260 -135793898 - L3 LINE CR1 -9 1568 1430 726 203 81 83 chr3 82243453 82243813 -135793345 - L1MC5 LINE L1 -22 7939 7581 2220 85 3 0 chr3 82244007 82244326 -135792832 - AluY SINE Alu 0 320 1 23 33 0 0 chr3 82244601 82244631 -135792527 + AT_rich Low_complexity Low_complexity 1 30 0 235 266 84 13 chr3 82244822 82244976 -135792182 + L1ME4a LINE L1 5742 5906 -215 255 217 0 0 chr3 82245037 82245097 -135792061 + (CATATA)n Simple_repeat Simple_repeat 5 64 0 371 285 114 13 chr3 82245140 82245298 -135791860 + L1ME4a LINE L1 5944 6117 -4 364 291 7 99 chr3 82245624 82245765 -135791393 - MER91C DNA MER1_type 0 140 13 2012 148 3 0 chr3 82245896 82246194 -135790964 - AluSx SINE Alu -13 299 1 211 204 37 19 chr3 82246662 82246716 -135790442 + CT-rich Low_complexity Low_complexity 3 57 0 2584 264 132 68 chr3 82246749 82248216 -135788942 + L1MC4 LINE L1 6470 8030 -12 569 309 97 0 chr3 82248317 82248534 -135788624 - MIR SINE MIR -23 239 2 311 302 126 39 chr3 82248581 82248763 -135788395 - MIR SINE MIR -17 245 48 893 204 130 0 chr3 82248924 82249155 -135788003 - ORSL DNA AcHobo -14 261 1 1343 204 34 34 chr3 82249515 82250051 -135787107 + pTR5 LTR ERV1 741 1344 -1094 4023 128 53 37 chr3 82250067 82250740 -135786418 + LTR12 LTR ERV1 5 688 0 474 272 183 32 chr3 82250888 82251226 -135785932 - MLT1K LTR MaLR -42 546 158 1675 169 36 0 chr3 82251402 82251681 -135785477 + AluSx SINE Alu 1 289 -23 1646 142 75 18 chr3 82251697 82251978 -135785180 + AluJo SINE Alu 1 297 -15 195 333 46 11 chr3 82253170 82253257 -135783901 + L2 LINE L2 3106 3195 -77 964 125 31 175 chr3 82255058 82255441 -135781717 - MER33 DNA MER1_type -3 321 1 21 0 0 0 chr3 82255511 82255532 -135781626 + AT_rich Low_complexity Low_complexity 1 21 0 363 267 53 27 chr3 82255584 82255734 -135781424 + L1ME4a LINE L1 5957 6110 -11 1990 120 18 3 chr3 82256001 82256328 -135780830 - AluSx SINE Alu 0 312 1 25 0 0 0 chr3 82256329 82256354 -135780804 + AT_rich Low_complexity Low_complexity 1 25 0 481 245 96 87 chr3 82256519 82256727 -135780431 + MIR SINE MIR 43 252 -10 21 0 0 0 chr3 82256864 82256885 -135780273 + AT_rich Low_complexity Low_complexity 1 21 0 225 248 133 18 chr3 82257064 82257177 -135779981 + MER103 DNA DNA 20 145 -21 632 236 98 81 chr3 82257552 82257616 -135779542 - MLT1E LTR MaLR 0 593 532 1756 124 12 0 chr3 82257616 82257865 -135779293 + AluSq SINE Alu 3 254 -59 632 236 98 81 chr3 82257865 82258236 -135778922 - MLT1E LTR MaLR -61 532 57 329 294 0 0 chr3 82258574 82258659 -135778499 + MIR SINE MIR 70 154 -108 835 279 62 50 chr3 82258673 82258976 -135778182 + L2 LINE L2 2697 3010 -303 1547 148 82 0 chr3 82258976 82259232 -135777926 - AluJb SINE Alu -12 300 24 835 279 62 50 chr3 82259232 82259503 -135777655 + L2 LINE L2 3010 3276 -37 779 188 16 0 chr3 82259882 82260010 -135777148 - FLAM_C SINE Alu -3 130 1 188 250 132 15 chr3 82261559 82261627 -135775531 + MIR SINE MIR 109 184 -78 2037 150 0 6 chr3 82262100 82262413 -135774745 - AluJb SINE Alu -1 311 1 189 250 0 23 chr3 82262747 82262791 -135774367 - L2 LINE L2 -92 3180 3138 710 190 0 25 chr3 82263129 82263274 -135773884 - FLAM_A SINE Alu 0 142 10 200 131 0 131 chr3 82263326 82263387 -135773771 - L2 LINE L2 -342 2971 2919 1081 217 147 41 chr3 82263593 82264008 -135773150 + MLT1C LTR MaLR 8 466 -1 287 231 39 48 chr3 82264018 82264122 -135773036 + L2 LINE L2 3150 3252 -61 537 277 112 74 chr3 82264281 82264375 -135772783 - LTR33A LTR ERVL -21 502 413 2278 109 3 0 chr3 82264375 82264679 -135772479 + AluSx SINE Alu 1 305 -7 537 277 112 74 chr3 82264679 82265092 -135772066 - LTR33A LTR ERVL -110 413 1 341 328 35 0 chr3 82265196 82265312 -135771846 + L2 LINE L2 3167 3286 -27 1069 199 40 0 chr3 82265713 82265914 -135771244 + MER20 DNA MER1_type 4 212 -7 25 0 0 0 chr3 82265921 82265946 -135771212 + AT_rich Low_complexity Low_complexity 1 25 0 270 326 89 55 chr3 82265963 82266199 -135770959 + MIR SINE MIR 8 251 -11 6542 122 140 115 chr3 82266291 82267951 -135769207 + pTR5 LTR ERV1 738 2438 0 2241 101 3 0 chr3 82268202 82268499 -135768659 - AluSp SINE Alu 0 313 16 3317 143 46 2 chr3 82269385 82269930 -135767228 + L1MB5 LINE L1 5531 6099 -75 419 294 28 57 chr3 82269998 82270175 -135766983 - MLT1K LTR MaLR -4 584 413 674 244 56 6 chr3 82270404 82270564 -135766594 + MIR SINE MIR 59 226 -36 1481 178 14 41 chr3 82270893 82271092 -135766066 - AluJo SINE Alu 0 313 124 2072 144 0 13 chr3 82271092 82271405 -135765753 + AluSx SINE Alu 1 309 -3 1481 178 14 41 chr3 82271405 82271526 -135765632 - AluJo SINE Alu -189 124 1 757 201 15 15 chr3 82271536 82271670 -135765488 - AluJo SINE Alu -177 135 2 533 294 119 0 chr3 82271670 82271871 -135765287 - MIR SINE MIR -36 226 2 431 291 148 9 chr3 82272844 82273054 -135764104 - MIR SINE MIR -19 243 5 2065 138 0 0 chr3 82273222 82273553 -135763605 + AluSx SINE Alu 1 331 0 195 129 0 0 chr3 82273702 82273733 -135763425 + (CA)n Simple_repeat Simple_repeat 2 32 0 250 265 160 30 chr3 82274082 82274196 -135762962 + MIR SINE MIR 27 152 -63 302 343 17 56 chr3 82274379 82274557 -135762601 + MER5A DNA MER1_type 16 186 -3 729 117 0 0 chr3 82274803 82274906 -135762252 - L1MB5 LINE L1 -13 6161 6059 287 307 65 33 chr3 82274907 82275060 -135762098 - MIR SINE MIR -59 203 46 292 229 16 0 chr3 82275542 82275603 -135761555 + MER94 DNA DNA 73 134 0 405 0 0 0 chr3 82276215 82276260 -135760898 + (TG)n Simple_repeat Simple_repeat 2 46 0 186 43 0 0 chr3 82276489 82276512 -135760646 + (GGAA)n Simple_repeat Simple_repeat 4 26 0 297 313 113 15 chr3 82276668 82276863 -135760295 + MIR SINE MIR 46 259 -3 187 303 67 59 chr3 82276895 82277014 -135760144 - MIR SINE MIR -142 120 1 653 253 61 25 chr3 82277233 82277431 -135759727 + LTR16C LTR ERVL 287 491 0 282 143 0 0 chr3 82277611 82277660 -135759498 + (TCC)n Simple_repeat Simple_repeat 1 49 0 1661 190 13 3 chr3 82277660 82277965 -135759193 - AluSx SINE Alu -4 308 1 2832 136 7 27 chr3 82278397 82278838 -135758320 - MSTB1 LTR MaLR 0 432 1 195 222 213 65 chr3 82279190 82279298 -135757860 - MIR SINE MIR -110 152 29 243 125 0 0 chr3 82279553 82279593 -135757565 + (CA)n Simple_repeat Simple_repeat 1 40 0 574 300 49 31 chr3 82279866 82280153 -135757005 - L2 LINE L2 0 3313 3022 2695 6 3 29 chr3 82280541 82280855 -135756303 - AluYa5 SINE Alu -5 306 1 251 289 118 0 chr3 82281120 82281196 -135755962 - MIR SINE MIR 0 262 178 310 319 101 14 chr3 82281543 82281681 -135755477 - HAL1 LINE L1 -91 2416 2267 425 338 126 0 chr3 82282419 82282641 -135754517 - MIR SINE MIR -1 261 12 872 254 107 84 chr3 82282723 82283220 -135753938 + MLT1J LTR MaLR 1 508 -3 600 245 122 21 chr3 82283302 82283588 -135753570 - HAL1 LINE L1 -137 2370 2056 200 222 191 0 chr3 82283622 82283685 -135753473 - MIR SINE MIR -71 191 117 402 222 135 32 chr3 82283783 82283909 -135753249 - MIR SINE MIR -108 154 16 239 316 35 9 chr3 82284215 82284329 -135752829 - MIR SINE MIR -119 143 27 762 249 77 29 chr3 82285097 82285306 -135751852 - MIR SINE MIR -23 239 21 1998 169 30 6 chr3 82285498 82285835 -135751323 + MER66B LTR ERV1 1 345 -141 511 179 12 0 chr3 82286291 82286375 -135750783 - AluJ/FLAM SINE Alu -225 87 3 394 311 68 0 chr3 82286376 82286508 -135750650 - MIR SINE MIR -99 163 23 183 229 95 76 chr3 82286567 82286672 -135750486 + MIR SINE MIR 44 150 -58 224 98 0 24 chr3 82286970 82287011 -135750147 + (CA)n Simple_repeat Simple_repeat 2 41 0 210 157 34 56 chr3 82287551 82287640 -135749518 + (TATAA)n Simple_repeat Simple_repeat 1 87 0 336 292 105 58 chr3 82287783 82287954 -135749204 - MLT1K LTR MaLR -223 365 187 26 0 0 0 chr3 82288142 82288168 -135748990 + AT_rich Low_complexity Low_complexity 1 26 0 878 221 53 0 chr3 82288601 82288791 -135748367 + MER3 DNA MER1_type 7 206 -3 235 211 0 39 chr3 82288751 82288803 -135748355 - MER3 DNA MER1_type -119 90 41 * 247 286 76 20 chr3 82289759 82289946 -135747212 + MLT1H1 LTR MaLR 107 306 -243 864 172 0 8 chr3 82289966 82290100 -135747058 - FLAM_C SINE Alu -10 133 1 466 196 174 54 chr3 82290109 82290293 -135746865 + MLT1H1 LTR MaLR 350 555 0 249 350 0 0 chr3 82290293 82290373 -135746785 - L2 LINE L2 -995 2319 2240 251 250 0 0 chr3 82290430 82290478 -135746680 + L2 LINE L2 3139 3186 -86 331 374 9 0 chr3 82290564 82290679 -135746479 + MIR SINE MIR 1 116 -146 575 319 9 71 chr3 82291634 82291860 -135745298 + MLT1K LTR MaLR 42 253 -335 1804 173 0 26 chr3 82291987 82292300 -135744858 + AluJb SINE Alu 1 305 -7 864 220 12 6 chr3 82292301 82292469 -135744689 + AluJb SINE Alu 135 303 -9 381 286 36 0 chr3 82292500 82292612 -135744546 + MLT1K LTR MaLR 471 586 -2 185 250 21 0 chr3 82292711 82292759 -135744399 - MIR SINE MIR -62 146 98 1019 263 75 57 chr3 82292810 82292901 -135744257 + MER58B DNA MER1_type 1 89 -2331 2114 125 3 0 chr3 82292901 82293223 -135743935 + AluSg SINE Alu 1 310 0 1019 263 75 57 chr3 82293223 82293416 -135743742 + MER58B DNA MER1_type 89 294 -2126 792 175 0 29 chr3 82293416 82293553 -135743605 + FLAM_C SINE Alu 1 133 0 1019 263 75 57 chr3 82293553 82293602 -135743556 + MER58B DNA MER1_type 294 341 0 288 275 37 95 chr3 82294064 82294253 -135742905 + MER5B DNA MER1_type 1 178 0 251 368 44 0 chr3 82295080 82295194 -135741964 - MIR SINE MIR -91 171 53 30 0 0 0 chr3 82295828 82295858 -135741300 + AT_rich Low_complexity Low_complexity 1 30 0 680 316 11 30 chr3 82296023 82296286 -135740872 - MIR SINE MIR 0 262 5 211 28 56 0 chr3 82296570 82296606 -135740552 + (TG)n Simple_repeat Simple_repeat 2 39 0 298 254 86 12 chr3 82297475 82297715 -135739443 + HAL1 LINE L1 1112 1387 -1120 1064 262 26 32 chr3 82297816 82298129 -135739029 + LTR16A LTR ERVL 106 416 -34 750 203 111 156 chr3 82298146 82298420 -135738738 + HAL1 LINE L1 1384 1622 -885 2184 136 0 0 chr3 82298420 82298721 -135738437 + AluSx SINE Alu 1 301 -11 750 203 111 156 chr3 82298721 82299003 -135738155 + HAL1 LINE L1 1622 1915 -592 209 85 0 64 chr3 82299008 82299055 -135738103 + (TAA)n Simple_repeat Simple_repeat 2 45 0 368 305 24 24 chr3 82299218 82299382 -135737776 + HAL1 LINE L1 2245 2408 -99 24 67 0 0 chr3 82299463 82299508 -135737650 + AT_rich Low_complexity Low_complexity 1 45 0 240 116 47 0 chr3 82299907 82299950 -135737208 - MER117 DNA MER1_type -106 91 47 326 204 19 78 chr3 82300041 82300144 -135737014 - LTR16B LTR ERVL 0 464 368 758 274 75 17 chr3 82300215 82300456 -135736702 - LTR16B LTR ERVL -202 262 8 3321 158 0 6 chr3 82300531 82301020 -135736138 + MER66B LTR ERV1 1 486 0 243 88 0 0 chr3 82301519 82301553 -135735605 + (CA)n Simple_repeat Simple_repeat 2 35 0 186 297 206 12 chr3 82302029 82302194 -135734964 - MIR SINE MIR -46 216 20 260 114 0 0 chr3 82302427 82302462 -135734696 + U6 snRNA snRNA 1 35 -72 255 31 0 0 chr3 82303024 82303056 -135734102 + (TTG)n Simple_repeat Simple_repeat 2 33 0 348 24 0 0 chr3 82303466 82303507 -135733651 + (CA)n Simple_repeat Simple_repeat 1 41 0 835 209 33 6 chr3 82303689 82303871 -135733287 - L1MC3 LINE L1 -673 7112 6926 231 302 139 29 chr3 82304119 82304493 -135732665 + L1ME LINE L1 5484 5898 -223 352 91 18 0 chr3 82304585 82304640 -135732518 - L1MD3 LINE L1 -1035 6960 6905 2038 141 3 3 chr3 82304814 82305126 -135732032 - AluSx SINE Alu 0 312 1 2196 132 0 0 chr3 82305943 82306253 -135730905 - AluSx SINE Alu -2 310 1 368 250 67 8 chr3 82307279 82307399 -135729759 + MIR SINE MIR 81 207 -55 717 254 69 60 chr3 82307869 82308203 -135728955 - LTR33A LTR ERVL -160 363 27 1214 184 210 8 chr3 82309860 82310158 -135727000 - MLT1F LTR MaLR 0 542 197 4812 158 55 41 chr3 82310176 82311023 -135726135 + MER21B LTR ERV1 3 861 -2 1650 198 8 36 chr3 82311043 82311366 -135725792 + L1MD3 LINE L1 7337 7651 -344 2205 112 0 3 chr3 82311366 82311661 -135725497 - AluSc SINE Alu -15 294 1 1650 198 8 36 chr3 82311661 82311695 -135725463 + L1MD3 LINE L1 7651 7684 -311 1013 171 7 0 chr3 82311714 82311988 -135725170 + GA-rich Low_complexity Low_complexity 1 277 0 1119 209 33 0 chr3 82311991 82312235 -135724923 + L1MD3 LINE L1 7670 7921 -74 1099 201 82 66 chr3 82312247 82312611 -135724547 - MLT1I LTR MaLR -27 419 10 288 306 0 12 chr3 82312669 82312754 -135724404 + T-rich Low_complexity Low_complexity 4 87 0 2483 65 7 0 chr3 82312865 82313171 -135723987 - AluY SINE Alu -3 308 1 359 287 49 25 chr3 82313411 82313533 -135723625 - L2 LINE L2 -7 3306 3182 244 241 63 13 chr3 82314501 82314580 -135722578 + L1ME3A LINE L1 5695 5777 -2031 3794 135 24 18 chr3 82314788 82315410 -135721748 - HSMAR2 DNA Mariner -2 1300 675 3802 122 14 2 chr3 82315410 82315974 -135721184 - HSMAR2 DNA Mariner -730 572 2 24 0 0 0 chr3 82316014 82316038 -135721120 + AT_rich Low_complexity Low_complexity 1 24 0 270 219 0 0 chr3 82316121 82316185 -135720973 + (TG)n Simple_repeat Simple_repeat 2 65 0 429 237 0 0 chr3 82316398 82316495 -135720663 - L1MA10 LINE L1 -2 6332 6236 1879 174 0 16 chr3 82316852 82317163 -135719995 - AluJb SINE Alu -6 306 1 369 271 69 41 chr3 82317166 82317462 -135719696 - L1MC4a LINE L1 -387 5734 5625 372 313 15 0 chr3 82318068 82318202 -135718956 + L1ME3A LINE L1 5783 5918 -252 1756 208 51 15 chr3 82318205 82318595 -135718563 - MLT1F LTR MaLR -4 538 135 482 236 143 12 chr3 82319004 82319165 -135717993 - MIR SINE MIR -21 241 60 2090 99 3 3 chr3 82319238 82319565 -135717593 - AluSx SINE Alu 0 327 1 322 186 17 0 chr3 82319729 82319788 -135717370 - MIR SINE MIR -24 238 179 226 299 44 111 chr3 82320529 82320800 -135716358 - L2 LINE L2 0 3272 3020 1899 136 3 3 chr3 82320822 82321108 -135716050 - AluSx SINE Alu -26 286 1 445 267 101 29 chr3 82321397 82321742 -135715416 + L1ME4a LINE L1 5591 5960 -161 30 77 0 0 chr3 82321832 82321897 -135715261 + AT_rich Low_complexity Low_complexity 1 65 0 470 344 6 16 chr3 82322516 82322699 -135714459 - MER5A DNA MER1_type -1 188 8 492 271 5 78 chr3 82323649 82323867 -135713291 + LTR67 LTR ERVL 328 529 -28 774 240 57 77 chr3 82324054 82324458 -135712700 - L1MC5 LINE L1 -48 7913 7518 811 183 0 8 chr3 82324478 82324609 -135712549 - FLAM_C SINE Alu -12 131 2 434 227 57 89 chr3 82324647 82324894 -135712264 - L1MC5 LINE L1 -431 7530 7292 296 234 31 78 chr3 82325013 82325141 -135712017 + L2 LINE L2 3182 3303 -10 255 321 58 44 chr3 82325208 82325345 -135711813 + L2 LINE L2 3112 3250 -22 596 259 136 74 chr3 82325727 82326079 -135711079 - MLT1K LTR MaLR -14 574 201 245 310 28 0 chr3 82326627 82326698 -135710460 - MER20B DNA MER1_type -643 140 68 295 351 32 3 chr3 82327346 82327490 -135709668 - MIR SINE MIR -55 153 41 1157 231 129 50 chr3 82331254 82331419 -135705739 + L2 LINE L2 2527 2678 -635 1243 171 38 9 chr3 82331419 82331629 -135705529 + MER20 DNA MER1_type 4 219 0 1157 231 129 50 chr3 82331629 82331893 -135705265 + L2 LINE L2 2678 3004 -309 280 228 50 59 chr3 82331902 82332003 -135705155 + MIR SINE MIR 155 254 -8 525 272 51 51 chr3 82332075 82332296 -135704862 + L2 LINE L2 3045 3268 -45 1198 201 28 5 chr3 82332296 82332510 -135704648 - MER20 DNA MER1_type 0 219 1 525 272 51 51 chr3 82332510 82332545 -135704613 + L2 LINE L2 3267 3301 -12 389 246 126 48 chr3 82333656 82333823 -135703335 + MIR SINE MIR 66 245 -17 234 158 26 0 chr3 82333816 82333854 -135703304 + L2 LINE L2 3218 3256 -16 * 197 91 30 0 chr3 82334133 82334166 -135702992 - L2 LINE L2 -9 3304 3271 289 283 11 22 chr3 82334191 82334283 -135702875 - MIR SINE MIR -11 251 161 25 51 0 0 chr3 82334287 82334326 -135702832 + AT_rich Low_complexity Low_complexity 1 39 0 374 241 85 43 chr3 82334326 82334467 -135702691 - MIR SINE MIR 0 262 116 413 265 53 67 chr3 82334919 82335166 -135701992 + MIR SINE MIR 2 239 -23 180 77 0 0 chr3 82335750 82335776 -135701382 + (TG)n Simple_repeat Simple_repeat 1 26 0 340 313 78 35 chr3 82336361 82336617 -135700541 - L2 LINE L2 -39 3274 3008 598 291 62 6 chr3 82336634 82336813 -135700345 + MIR SINE MIR 55 243 -19 1995 151 3 3 chr3 82337473 82337778 -135699380 - AluSx SINE Alu -7 305 1 195 129 0 0 chr3 82339616 82339647 -135697511 + (T)n Simple_repeat Simple_repeat 1 31 0 949 203 34 0 chr3 82339824 82340001 -135697157 - MER5A DNA MER1_type 0 189 7 234 189 67 56 chr3 82340114 82340204 -135696954 - MLT1K LTR MaLR -29 559 469 260 268 72 62 chr3 82340896 82340993 -135696165 + MIR SINE MIR 30 127 -135 2751 122 22 59 chr3 82341002 82341446 -135695712 + MSTA LTR MaLR 1 428 0 3651 128 2 0 chr3 82341446 82341978 -135695180 + MSTA-int LTR MaLR 1 533 -1118 1095 169 0 6 chr3 82341978 82342161 -135694997 + MSTA LTR MaLR 122 303 -125 6788 151 29 8 chr3 82342163 82343256 -135693902 + MSTA-int LTR MaLR 536 1651 0 2417 135 18 54 chr3 82343256 82343459 -135693699 + MSTA LTR MaLR 1 210 -218 1484 125 225 4 chr3 82343459 82343699 -135693459 - AluSg SINE Alu -7 293 1 2417 135 18 54 chr3 82343699 82343939 -135693219 + MSTA LTR MaLR 210 428 0 261 250 34 23 chr3 82343960 82344048 -135693110 + MIR SINE MIR 146 234 -28 251 111 0 0 chr3 82344785 82344821 -135692337 + (T)n Simple_repeat Simple_repeat 1 36 0 184 256 0 0 chr3 82345113 82345156 -135692002 + MIR SINE MIR 155 197 -65 7543 59 15 0 chr3 82345480 82346433 -135690725 - L1PA8 LINE L1 -14 6158 5203 405 0 0 0 chr3 82347348 82347393 -135689765 + (TG)n Simple_repeat Simple_repeat 2 46 0 222 62 0 0 chr3 82347429 82347461 -135689697 + (TA)n Simple_repeat Simple_repeat 1 32 0 225 0 0 0 chr3 82347468 82347493 -135689665 + (CA)n Simple_repeat Simple_repeat 1 25 0 1616 199 10 13 chr3 82347520 82347821 -135689337 - AluJo SINE Alu -12 300 1 201 247 206 10 chr3 82347971 82348068 -135689090 + L2 LINE L2 3198 3313 0 319 282 173 6 chr3 82348177 82348333 -135688825 + MIR SINE MIR 74 255 -7 1636 208 28 13 chr3 82348387 82348971 -135688187 + MER82 DNA MER2_type 1 652 -1 2394 65 3 3 chr3 82349136 82349427 -135687731 - AluY SINE Alu -20 291 1 1479 185 115 29 chr3 82349644 82350048 -135687110 - MER66A LTR ERV1 0 520 98 465 282 143 29 chr3 82350618 82350827 -135686331 - MIR SINE MIR -22 240 8 186 310 35 69 chr3 82355014 82355159 -135681999 + L3b LINE CR1 1320 1459 -124 1902 109 51 55 chr3 82355566 82355877 -135681281 - AluSx SINE Alu -2 310 1 261 337 83 6 chr3 82356066 82356247 -135680911 - MER117 DNA MER1_type 0 197 3 214 301 97 0 chr3 82356523 82356616 -135680542 - L2 LINE L2 -17 3255 3154 1982 121 0 4 chr3 82356672 82356977 -135680181 + AluSx SINE Alu 21 312 0 221 269 0 15 chr3 82357119 82357186 -135679972 - L2 LINE L2 -623 2691 2626 218 309 162 15 chr3 82357381 82357449 -135679709 - L2 LINE L2 -25 3247 3170 393 282 105 16 chr3 82358310 82358434 -135678724 + MIR SINE MIR 11 145 -117 398 236 54 158 chr3 82358434 82358693 -135678465 + MIR SINE MIR 12 243 -19 1818 171 26 0 chr3 82358818 82359123 -135678035 - 7SLRNA srpRNA srpRNA 0 320 8 694 151 99 17 chr3 82359176 82359348 -135677810 - MER53 DNA DNA 0 189 4 200 153 41 71 chr3 82460607 82460705 -135576453 + (CGGGG)n Simple_repeat Simple_repeat 5 99 0 35 0 0 0 chr3 82460758 82460793 -135576365 + GC_rich Low_complexity Low_complexity 1 35 0 28 132 0 0 chr3 82462445 82462483 -135574675 + GC_rich Low_complexity Low_complexity 1 38 0 278 266 11 11 chr3 82464502 82464596 -135572562 + LSAU Satellite Satellite 31 124 -374 830 144 0 6 chr3 82465970 82466151 -135571007 + (CATTC)n Satellite Satellite 1 180 0 675 176 0 0 chr3 82466175 82466445 -135570713 + (CATTC)n Satellite Satellite 1 270 0 632 173 6 0 chr3 82466480 82466659 -135570499 + (CATTC)n Satellite Satellite 1 180 0 1032 162 0 0 chr3 82466709 82467074 -135570084 + (CATTC)n Satellite Satellite 1 365 0 885 162 2 7 chr3 82467099 82467523 -135569635 + (CATTC)n Satellite Satellite 1 422 0 729 186 0 0 chr3 82467534 82467967 -135569191 + (CATTC)n Satellite Satellite 1 433 0 414 161 0 0 chr3 82467998 82468091 -135569067 + (CATTC)n Satellite Satellite 2 94 0 870 161 5 7 chr3 82468105 82468723 -135568435 + (CATTC)n Satellite Satellite 1 617 0 501 204 3 3 chr3 82468735 82469075 -135568083 + (CATTC)n Satellite Satellite 1 340 0 626 180 6 0 chr3 82469088 82469266 -135567892 + (CATTC)n Satellite Satellite 1 179 0 822 150 4 2 chr3 82469302 82469815 -135567343 + (CATTC)n Satellite Satellite 1 514 0 608 159 0 28 chr3 82469865 82470047 -135567111 + (CATTC)n Satellite Satellite 2 178 0 855 147 0 0 chr3 82470072 82470249 -135566909 + (CATTC)n Satellite Satellite 4 180 0 683 174 0 17 chr3 82470270 82470556 -135566602 + (CATTC)n Satellite Satellite 1 281 0 844 171 0 15 chr3 82470576 82470919 -135566239 + (CATTC)n Satellite Satellite 1 337 0 864 132 0 35 chr3 82470969 82471340 -135565818 + (CATTC)n Satellite Satellite 1 358 0 981 118 0 0 chr3 82471354 82471532 -135565626 + (CATTC)n Satellite Satellite 3 180 0 306 204 0 0 chr3 82471544 82471637 -135565521 + (CATTC)n Satellite Satellite 3 95 0 665 154 0 28 chr3 82471674 82471856 -135565302 + (CATTC)n Satellite Satellite 4 180 0 801 169 4 2 chr3 82471872 82472344 -135564814 + (CATTC)n Satellite Satellite 1 473 0 836 155 0 10 chr3 82472362 82472839 -135564319 + (CATTC)n Satellite Satellite 1 472 0 703 156 6 6 chr3 82472894 82473074 -135564084 + (CATTC)n Satellite Satellite 1 180 0 638 123 0 61 chr3 82473109 82473338 -135563820 + (CATTC)n Satellite Satellite 1 215 0 852 141 0 0 chr3 82473375 82473552 -135563606 + (CATTC)n Satellite Satellite 4 180 0 830 174 0 9 chr3 82473569 82474142 -135563016 + (CATTC)n Satellite Satellite 1 568 0 1089 158 0 4 chr3 82474160 82475457 -135561701 + (CATTC)n Satellite Satellite 1 1291 0 805 166 2 8 chr3 82475516 82476355 -135560803 + (CATTC)n Satellite Satellite 1 833 0 882 159 0 4 chr3 82476381 82476665 -135560493 + (CATTC)n Satellite Satellite 1 282 0 897 149 0 0 chr3 82476684 82477330 -135559828 + (CATTC)n Satellite Satellite 1 646 0 969 123 0 0 chr3 82477357 82477536 -135559622 + (CATTC)n Satellite Satellite 2 180 0 229 113 65 0 chr3 82477548 82477610 -135559548 + HSATII Satellite Satellite 22 87 -83 * 828 151 0 11 chr3 82477598 82478045 -135559113 + (CATTC)n Satellite Satellite 1 442 0 788 127 6 0 chr3 82478099 82478264 -135558894 + (CATTC)n Satellite Satellite 5 170 0 942 170 1 2 chr3 82478297 82479229 -135557929 + (CATTC)n Satellite Satellite 1 930 0 226 202 11 11 chr3 82479244 82479338 -135557820 + (CATTC)n Satellite Satellite 1 94 0 789 153 0 0 chr3 82479350 82479526 -135557632 + (CATTC)n Satellite Satellite 2 177 0 979 101 6 6 chr3 82479551 82479729 -135557429 + (CATTC)n Satellite Satellite 3 180 0 505 202 6 6 chr3 82479761 82479939 -135557219 + (CATTC)n Satellite Satellite 3 180 0 945 159 0 23 chr3 82479977 82480439 -135556719 + (CATTC)n Satellite Satellite 1 451 0 300 164 0 0 chr3 82480455 82480522 -135556636 + (CATTC)n Satellite Satellite 3 69 0 591 197 0 0 chr3 82480535 82480713 -135556445 + (CATTC)n Satellite Satellite 3 180 0 904 158 3 3 chr3 82480736 82481058 -135556100 + (CATTC)n Satellite Satellite 1 322 0 722 180 0 12 chr3 82481104 82481347 -135555811 + (CATTC)n Satellite Satellite 1 239 0 519 206 0 0 chr3 82481371 82481551 -135555607 + (CATTC)n Satellite Satellite 1 180 0 1254 67 0 0 chr3 82481573 82481751 -135555407 + (CATTC)n Satellite Satellite 3 180 0 192 224 0 0 chr3 82481769 82481836 -135555322 + (CATTC)n Satellite Satellite 4 70 0 588 186 0 0 chr3 82481854 82482021 -135555137 + (CATTC)n Satellite Satellite 4 170 0 804 176 1 1 chr3 82482057 82482810 -135554348 + (CATTC)n Satellite Satellite 1 753 0 1029 147 1 5 chr3 82482827 82483610 -135553548 + (CATTC)n Satellite Satellite 1 780 0 780 151 0 0 chr3 82483672 82483851 -135553307 + (CATTC)n Satellite Satellite 2 180 0 1056 169 0 2 chr3 82483906 82484439 -135552719 + (CATTC)n Satellite Satellite 1 531 0 742 158 3 3 chr3 82484451 82484795 -135552363 + (CATTC)n Satellite Satellite 1 344 0 789 152 0 0 chr3 82484828 82484999 -135552159 + (CATTC)n Satellite Satellite 4 174 0 906 176 2 8 chr3 82485033 82485514 -135551644 + (CATTC)n Satellite Satellite 1 478 0 945 155 0 7 chr3 82485533 82485996 -135551162 + (CATTC)n Satellite Satellite 1 459 0 747 169 0 10 chr3 82486047 82486568 -135550590 + (CATTC)n Satellite Satellite 1 516 0 527 167 0 30 chr3 82486597 82486765 -135550393 + (CATTC)n Satellite Satellite 2 164 0 183 152 0 0 chr3 82486791 82486837 -135550321 + (CATTC)n Satellite Satellite 1 46 0 825 172 0 0 chr3 82486861 82487187 -135549971 + (CATTC)n Satellite Satellite 1 326 0 1131 143 1 3 chr3 82487201 82488111 -135549047 + (CATTC)n Satellite Satellite 1 908 0 738 182 0 0 chr3 82488167 82488486 -135548672 + (CATTC)n Satellite Satellite 1 319 0 674 189 6 0 chr3 82488504 82488837 -135548321 + (CATTC)n Satellite Satellite 1 335 0 897 164 3 8 chr3 82488887 82489502 -135547656 + (CATTC)n Satellite Satellite 1 612 0 626 179 6 0 chr3 82489553 82489726 -135547432 + (CATTC)n Satellite Satellite 2 175 0 771 178 0 0 chr3 82489761 82490126 -135547032 + (CATTC)n Satellite Satellite 1 365 0 627 174 0 0 chr3 82490143 82490321 -135546837 + (CATTC)n Satellite Satellite 3 180 0 999 142 2 4 chr3 82490341 82490793 -135546365 + (CATTC)n Satellite Satellite 1 451 0 793 195 6 0 chr3 82490804 82491118 -135546040 + (CATTC)n Satellite Satellite 1 316 0 831 176 1 1 chr3 82491149 82491989 -135545169 + (CATTC)n Satellite Satellite 1 840 0 866 131 0 16 chr3 82492014 82492197 -135544961 + (CATTC)n Satellite Satellite 1 180 0 816 173 2 0 chr3 82492220 82492821 -135544337 + (CATTC)n Satellite Satellite 1 602 0 1188 121 0 6 chr3 82492845 82493365 -135543793 + (CATTC)n Satellite Satellite 1 517 0 972 139 0 2 chr3 82493383 82493932 -135543226 + (CATTC)n Satellite Satellite 1 547 0 407 263 0 0 chr3 82493936 82494035 -135543123 + (CACTC)n Simple_repeat Simple_repeat 5 103 0 561 239 0 0 chr3 82494042 82494222 -135542936 + (CATTC)n Simple_repeat Simple_repeat 1 180 0 309 253 27 0 chr3 82494237 82494312 -135542846 - AluS SINE Alu -1 300 224 855 164 0 0 chr3 82494324 82494495 -135542663 + (CACTC)n Simple_repeat Simple_repeat 1 171 0 309 239 30 0 chr3 82494506 82494573 -135542585 - Alu SINE Alu -8 293 225 528 179 0 0 chr3 82494585 82494702 -135542456 + (CATTC)n Simple_repeat Simple_repeat 5 121 0 259 257 31 0 chr3 82494702 82494792 -135542366 - AluJ/FRAM SINE Alu -14 288 225 792 171 0 0 chr3 82494792 82494956 -135542202 + (CATTC)n Simple_repeat Simple_repeat 1 164 0 1016 136 3 3 chr3 82495056 82495415 -135541743 + (CATTC)n Satellite Satellite 1 360 0 882 170 4 0 chr3 82495436 82495908 -135541250 + (CATTC)n Satellite Satellite 1 474 0 422 220 0 6 chr3 82495926 82496099 -135541059 + (CATTC)n Satellite Satellite 4 175 0 1038 160 0 0 chr3 82496144 82496508 -135540650 + (CATTC)n Satellite Satellite 1 364 0 387 224 0 0 chr3 82496567 82496741 -135540417 + (CATTC)n Satellite Satellite 1 174 0 741 182 0 0 chr3 82496791 82497072 -135540086 + (CATTC)n Satellite Satellite 1 281 0 456 189 0 0 chr3 82497097 82497240 -135539918 + (CATTC)n Satellite Satellite 1 143 0 869 134 6 0 chr3 82497288 82497460 -135539698 + (CATTC)n Satellite Satellite 3 175 0 939 144 0 21 chr3 82497495 82497860 -135539298 + (CATTC)n Satellite Satellite 1 358 0 924 133 0 0 chr3 82497890 82498070 -135539088 + (CATTC)n Satellite Satellite 1 180 0 762 162 0 0 chr3 82498100 82498279 -135538879 + (CATTC)n Satellite Satellite 1 179 0 879 146 0 0 chr3 82498290 82498609 -135538549 + (CATTC)n Satellite Satellite 1 319 0 921 182 4 9 chr3 82498627 82498694 -135538464 + (CATTC)n Satellite Satellite 1 67 -228 186 118 0 0 chr3 82498694 82498728 -135538430 + (CATTG)n Simple_repeat Simple_repeat 2 35 0 921 182 4 9 chr3 82498728 82498744 -135538414 + (CATTC)n Satellite Satellite 67 295 0 921 128 0 0 chr3 82498744 82498924 -135538234 + (CATTC)n Satellite Satellite 1 180 0 396 206 0 0 chr3 82499216 82499362 -135537796 + (CATTC)n Satellite Satellite 4 149 0 729 160 2 12 chr3 82499409 82499917 -135537241 + (CATTC)n Satellite Satellite 1 503 0 769 164 3 3 chr3 82499934 82500283 -135536875 + (CATTC)n Satellite Satellite 1 349 0 642 171 0 0 chr3 82500321 82500603 -135536555 + (CATTC)n Satellite Satellite 1 282 0 963 149 0 0 chr3 82500644 82500916 -135536242 + (CATTC)n Satellite Satellite 1 272 0 798 144 0 0 chr3 82500987 82501167 -135535991 + (CATTC)n Satellite Satellite 1 180 0 606 189 0 0 chr3 82501191 82501366 -135535792 + (CATTC)n Satellite Satellite 5 179 0 990 162 1 1 chr3 82501417 82502526 -135534632 + (CATTC)n Satellite Satellite 1 1109 0 639 173 0 0 chr3 82502569 82502737 -135534421 + (CATTC)n Satellite Satellite 4 171 0 786 184 0 0 chr3 82502753 82503055 -135534103 + (CATTC)n Satellite Satellite 1 302 0 1096 116 6 22 chr3 82503075 82503434 -135533724 + (CATTC)n Satellite Satellite 5 354 0 270 204 0 0 chr3 82503449 82503547 -135533611 + (CATTC)n Satellite Satellite 5 102 0 753 172 0 0 chr3 82503570 82503750 -135533408 + (CATTC)n Satellite Satellite 1 180 0 912 156 2 7 chr3 82503802 82504763 -135532395 + (CATTC)n Satellite Satellite 1 955 0 660 191 0 0 chr3 82504774 82504947 -135532211 + (CATTC)n Satellite Satellite 2 174 0 786 157 0 0 chr3 82505009 82505187 -135531971 + (CATTC)n Satellite Satellite 2 179 0 599 165 0 22 chr3 82505200 82505382 -135531776 + (CATTC)n Satellite Satellite 3 180 0 516 204 0 0 chr3 82505395 82505571 -135531587 + (CATTC)n Satellite Satellite 4 179 0 960 162 6 0 chr3 82505630 82505981 -135531177 + (CATTC)n Satellite Satellite 4 354 0 927 163 0 17 chr3 82506001 82506356 -135530802 + (CATTC)n Satellite Satellite 5 350 0 915 139 0 0 chr3 82506367 82506547 -135530611 + (CATTC)n Satellite Satellite 1 180 0 653 162 0 0 chr3 82506568 82506704 -135530454 + (CATTC)n Satellite Satellite 2 137 0 356 206 29 0 chr3 82506704 82506772 -135530386 - Alu SINE Alu -8 293 224 810 172 9 0 chr3 82506772 82506994 -135530164 + (CATTC)n Satellite Satellite 1 224 0 341 238 42 0 chr3 82507000 82507098 -135530060 - AluS SINE Alu -12 290 226 420 153 0 0 chr3 82507098 82507183 -135529975 + (CACTC)n Simple_repeat Simple_repeat 2 86 0 1085 131 2 6 chr3 82507220 82511088 -135526070 - BSR/Beta Satellite Satellite 0 3851 1 * 2473 151 10 8 chr3 82511083 82511580 -135525578 + LSAU Satellite Satellite 1 498 0 409 228 16 8 chr3 82513054 82513177 -135523981 + LSAU Satellite Satellite 16 139 -359 929 141 4 7 chr3 82513843 82516939 -135520219 - BSR/Beta Satellite Satellite 0 3085 1 * 2438 161 6 6 chr3 82516934 82517432 -135519726 + LSAU Satellite Satellite 1 498 0 962 124 3 6 chr3 82519696 82525357 -135511801 - BSR/Beta Satellite Satellite 0 5643 1 * 2309 142 75 6 chr3 82525352 82525684 -135511474 + LSAU Satellite Satellite 1 376 -122 192 97 0 0 chr3 82525684 82525715 -135511443 + (TTGGGG)n Simple_repeat Simple_repeat 4 34 0 2309 142 75 6 chr3 82525715 82525848 -135511310 + LSAU Satellite Satellite 376 498 0 366 243 9 0 chr3 82527334 82527441 -135509717 + LSAU Satellite Satellite 20 127 -371 946 130 3 6 chr3 82528108 82537459 -135499699 - BSR/Beta Satellite Satellite 0 9319 1 * 2414 168 10 4 chr3 82537446 82537941 -135499217 + LSAU Satellite Satellite 1 498 0 401 213 7 87 chr3 82539350 82539500 -135497658 + LSAU Satellite Satellite 2 139 -359 922 149 1 5 chr3 82540168 82541803 -135495355 - BSR/Beta Satellite Satellite -2 1628 1 * 2577 131 12 6 chr3 82541798 82542293 -135494865 + LSAU Satellite Satellite 1 498 0 334 271 16 8 chr3 82543774 82543896 -135493262 + LSAU Satellite Satellite 17 139 -359 905 126 3 7 chr3 82544561 82547281 -135489877 - BSR/Beta Satellite Satellite 0 2709 1 966 115 3 5 chr3 82547711 82551582 -135485576 + BSR/Beta Satellite Satellite 1 3862 -47 419 204 9 0 chr3 82552266 82552374 -135484784 - LSAU Satellite Satellite -374 124 16 2498 157 6 6 chr3 82553848 82554346 -135482812 - LSAU Satellite Satellite 0 498 1 969 120 4 6 chr3 82554333 82560005 -135477153 + BSR/Beta Satellite Satellite 1 5656 -47 * 366 260 8 0 chr3 82560672 82560795 -135476363 - LSAU Satellite Satellite -359 139 16 2250 177 8 6 chr3 82562270 82562767 -135474391 - LSAU Satellite Satellite 0 498 1 948 120 3 5 chr3 82562769 82570532 -135466626 + BSR/Beta Satellite Satellite 1 7747 -47 387 268 8 0 chr3 82571202 82571325 -135465833 - LSAU Satellite Satellite -359 139 16 2297 173 6 6 chr3 82572808 82573305 -135463853 - LSAU Satellite Satellite 0 498 2 971 119 3 6 chr3 82573308 82579782 -135457376 + BSR/Beta Satellite Satellite 1 6455 -47 282 227 0 0 chr3 82580523 82580598 -135456560 - LSAU Satellite Satellite -408 90 16 2418 147 14 6 chr3 82582078 82582567 -135454591 - LSAU Satellite Satellite -5 493 1 982 112 4 6 chr3 82582567 82589511 -135447647 + BSR/Beta Satellite Satellite 1 6929 -47 387 213 7 87 chr3 82590182 82590332 -135446826 - LSAU Satellite Satellite -360 138 1 2163 185 8 6 chr3 82591777 82592274 -135444884 - LSAU Satellite Satellite 0 498 1 1034 116 4 6 chr3 82592280 82602322 -135434836 + BSR/Beta Satellite Satellite 1 10020 -42 396 197 7 88 chr3 82602982 82603129 -135434029 - LSAU Satellite Satellite -363 135 1 2499 132 12 8 chr3 82604570 82605064 -135432094 - LSAU Satellite Satellite 0 498 3 914 148 2 7 chr3 82605066 82607312 -135429846 - BSR/Beta Satellite Satellite 0 2234 1 * 2218 177 12 8 chr3 82607299 82607795 -135429363 + LSAU Satellite Satellite 1 498 0 376 241 9 0 chr3 82609267 82609375 -135427783 + LSAU Satellite Satellite 16 124 -374 232 330 0 0 chr3 82609518 82609606 -135427552 + G-rich Low_complexity Low_complexity 1 88 0 952 132 6 8 chr3 82610050 82612439 -135424719 - BSR/Beta Satellite Satellite 0 2385 1 * 2274 161 8 6 chr3 82612434 82612931 -135424227 + LSAU Satellite Satellite 1 498 0 999 118 4 6 chr3 82613325 82615041 -135422117 - BSR/Beta Satellite Satellite 0 1713 1 965 122 8 9 chr3 82615044 82617056 -135420102 - HSATII Satellite Satellite -1 2009 1 258 107 36 0 chr3 82617096 82617184 -135419974 - HSATII Satellite Satellite -91 91 1 921 119 13 17 chr3 82617203 82618934 -135418224 - HSATII Satellite Satellite 0 1723 1 947 125 7 15 chr3 82618959 82619967 -135417191 - HSATII Satellite Satellite -27 1000 1 1010 114 7 16 chr3 82619991 82622230 -135414928 - HSATII Satellite Satellite 0 2217 1 686 111 11 66 chr3 82622253 82622531 -135414627 - HSATII Satellite Satellite -49 262 1 1007 117 12 12 chr3 82622543 82626009 -135411149 - HSATII Satellite Satellite 0 3466 1 1001 127 5 15 chr3 82626034 82626838 -135410320 - HSATII Satellite Satellite -53 796 1 1040 112 10 11 chr3 82626851 82630375 -135406783 - HSATII Satellite Satellite 0 3522 1 715 141 18 18 chr3 82630400 82630570 -135406588 - HSATII Satellite Satellite 0 170 1 965 121 6 19 chr3 82630601 82632882 -135404276 - HSATII Satellite Satellite -23 2251 1 881 126 10 19 chr3 82632904 82633614 -135403544 - HSATII Satellite Satellite -4 703 1 1019 114 12 8 chr3 82633625 82635048 -135402110 - HSATII Satellite Satellite -3 1428 1 1019 116 8 14 chr3 82635079 82638732 -135398426 - HSATII Satellite Satellite -72 3629 1 1031 109 13 11 chr3 82638770 82639318 -135397840 - HSATII Satellite Satellite 0 549 1 972 116 0 13 chr3 82639349 82639581 -135397577 - HSATII Satellite Satellite -53 229 1 989 122 4 12 chr3 82639594 82641783 -135395375 - HSATII Satellite Satellite -9 2171 1 1031 113 9 14 chr3 82641806 82645910 -135391248 - HSATII Satellite Satellite -1 4086 1 835 283 29 4 chr3 82745981 82746221 -135290937 + MIR SINE MIR 6 251 -11 280 326 31 23 chr3 82746306 82746435 -135290723 + MIR SINE MIR 117 246 -16 21 0 0 0 chr3 82746804 82746825 -135290333 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr3 82747186 82747211 -135289947 + (A)n Simple_repeat Simple_repeat 1 25 0 257 336 252 4 chr3 82747866 82748104 -135289054 - L2 LINE L2 0 3313 3017 10861 113 9 8 chr3 82750189 82751766 -135285392 + THE1A-int LTR MaLR 1 1580 0 909 138 6 6 chr3 82751766 82751926 -135285232 + THE1A LTR MaLR 1 160 -195 497 275 107 49 chr3 82752295 82752539 -135284619 - MIR SINE MIR 0 262 5 553 290 14 46 chr3 82753115 82753332 -135283826 + MIR SINE MIR 21 230 -32 2828 10 0 0 chr3 82753531 82753840 -135283318 + AluYa5 SINE Alu 1 309 -2 220 209 43 0 chr3 82755018 82755077 -135282081 - MIR SINE MIR -62 146 81 216 97 0 0 chr3 82757005 82757036 -135280122 + (T)n Simple_repeat Simple_repeat 1 31 0 225 0 0 0 chr3 82757630 82757655 -135279503 + (T)n Simple_repeat Simple_repeat 1 25 0 346 279 27 0 chr3 82757896 82758007 -135279151 + MIR SINE MIR 78 191 -71 832 211 46 55 chr3 82758022 82758349 -135278809 - Charlie5 DNA MER1_type 0 2624 2301 21 0 0 0 chr3 82758612 82758633 -135278525 + AT_rich Low_complexity Low_complexity 1 21 0 522 188 101 72 chr3 82759173 82759381 -135277777 + MIR SINE MIR 49 262 0 492 320 34 60 chr3 82759412 82759646 -135277512 + MIR SINE MIR 35 262 0 268 330 22 0 chr3 82759696 82759787 -135277371 + L2 LINE L2 2550 2642 -672 333 284 62 58 chr3 82759793 82760006 -135277152 + L2 LINE L2 2795 3006 -266 3141 152 57 45 chr3 82761087 82761812 -135275346 - L1MB7 LINE L1 -19 6165 5433 26 0 0 0 chr3 82762687 82762713 -135274445 + AT_rich Low_complexity Low_complexity 1 26 0 488 312 131 32 chr3 82763257 82763693 -135273465 - L1ME4a LINE L1 -74 6047 5569 295 298 19 10 chr3 82764342 82764446 -135272712 - MIR SINE MIR 0 262 158 284 230 135 0 chr3 82764522 82764596 -135272562 - MIR SINE MIR -106 156 73 28 29 0 0 chr3 82765179 82765214 -135271944 + AT_rich Low_complexity Low_complexity 1 35 0 279 325 81 0 chr3 82768327 82768450 -135268708 + MIR SINE MIR 81 213 -49 669 246 77 6 chr3 82768715 82768898 -135268260 + MIR SINE MIR 34 229 -33 906 198 12 61 chr3 82769042 82769289 -135267869 - MER106A DNA MER1_type -1 235 1 1901 201 48 11 chr3 82773786 82774220 -135262938 + L1ME1 LINE L1 5698 6147 -19 22 35 0 0 chr3 82774312 82774341 -135262817 + AT_rich Low_complexity Low_complexity 1 29 0 2319 209 92 25 chr3 82774614 82775245 -135261913 - L1ME3A LINE L1 -5 6165 5493 23 0 0 0 chr3 82775875 82775898 -135261260 + AT_rich Low_complexity Low_complexity 1 23 0 251 253 101 19 chr3 82776120 82776278 -135260880 - L1ME3A LINE L1 -234 5936 5766 2205 81 46 0 chr3 82776287 82776571 -135260587 - AluSg SINE Alu -13 297 1 1173 217 80 28 chr3 82776717 82777044 -135260114 + MER2 DNA MER2_type 1 344 0 1054 208 24 0 chr3 82777084 82777296 -135259862 - MER20 DNA MER1_type -1 218 2 208 139 0 0 chr3 82777684 82777720 -135259438 + (A)n Simple_repeat Simple_repeat 1 36 0 659 214 249 22 chr3 82778718 82779031 -135258127 + MER113 DNA MER1_type? 132 515 -6 211 139 23 0 chr3 82779349 82779392 -135257766 + T-rich Low_complexity Low_complexity 5 48 0 421 358 8 0 chr3 82779465 82779599 -135257559 - L2 LINE L2 -16 3256 3122 374 208 0 0 chr3 82780184 82780256 -135256902 + L2 LINE L2 3242 3313 0 412 333 43 0 chr3 82781350 82781512 -135255646 - MIR SINE MIR -11 251 83 2192 60 40 17 chr3 82782751 82783049 -135254109 + AluY SINE Alu 2 306 -5 2335 37 40 13 chr3 82784202 82784500 -135252658 + AluY SINE Alu 1 306 -5 297 283 240 30 chr3 82785155 82785459 -135251699 - L2 LINE L2 0 3313 2946 26 64 0 0 chr3 82785915 82785962 -135251196 + AT_rich Low_complexity Low_complexity 1 47 0 206 319 22 74 chr3 82785962 82786097 -135251061 - MER5A DNA MER1_type -1 188 61 252 355 65 0 chr3 82786976 82787069 -135250089 - L2 LINE L2 -1 3312 3214 668 197 33 0 chr3 82787616 82787738 -135249420 - FLAM_A SINE Alu -7 126 1 711 320 61 0 chr3 82787939 82788170 -135248988 - MIR SINE MIR -17 245 1 291 247 52 13 chr3 82788224 82788301 -135248857 + L2 LINE L2 3188 3267 -5 501 312 240 15 chr3 82788344 82788968 -135248190 + L2 LINE L2 2543 3312 -1 348 188 30 30 chr3 82789113 82789214 -135247944 - MIR SINE MIR -96 166 66 189 0 0 0 chr3 82790420 82790441 -135246717 + (TGGGGG)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr3 82791203 82791225 -135245933 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 82791579 82791600 -135245558 + AT_rich Low_complexity Low_complexity 1 21 0 788 288 5 9 chr3 82792068 82792283 -135244875 - MIR SINE MIR -39 223 10 2246 98 0 3 chr3 82792496 82792793 -135244365 + AluSg SINE Alu 1 296 -14 314 204 215 21 chr3 82793049 82793142 -135244016 - L2 LINE L2 -1 3312 3202 249 325 60 8 chr3 82793195 82793312 -135243846 - MLT1J LTR MaLR -193 318 196 198 0 0 0 chr3 82794140 82794162 -135242996 + (CA)n Simple_repeat Simple_repeat 2 23 0 261 250 0 62 chr3 82794180 82794276 -135242882 - L1MC4 LINE L1 -1339 6703 6614 285 161 0 0 chr3 82794278 82794321 -135242837 + (TA)n Simple_repeat Simple_repeat 2 47 -10 1893 99 0 0 chr3 82794321 82794564 -135242594 - AluSc SINE Alu -17 292 50 285 161 0 0 chr3 82794564 82794576 -135242582 + (TA)n Simple_repeat Simple_repeat 46 57 0 1130 268 69 60 chr3 82794858 82795395 -135241763 - MLT1K LTR MaLR -45 543 2 240 152 0 0 chr3 82796422 82796468 -135240690 - Charlie7 DNA MER1_type -2509 103 58 211 345 11 35 chr3 82797598 82797685 -135239473 + MIR SINE MIR 21 105 -103 221 341 59 44 chr3 82797703 82797838 -135239320 + MER5A DNA MER1_type 26 162 -27 243 299 13 0 chr3 82798338 82798415 -135238743 - MIR SINE MIR -28 234 157 244 325 3 0 chr3 82798982 82799065 -135238093 - MIR SINE MIR -87 121 36 22 35 0 0 chr3 82799862 82799891 -135237267 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr3 82800256 82800282 -135236876 + AT_rich Low_complexity Low_complexity 1 26 0 225 0 0 0 chr3 82801615 82801640 -135235518 + (T)n Simple_repeat Simple_repeat 1 25 0 518 254 32 0 chr3 82801880 82802006 -135235152 + MIR SINE MIR 78 207 -55 1599 171 36 46 chr3 82802006 82802399 -135234759 - Charlie5 DNA MER1_type 0 2624 2236 364 199 68 29 chr3 82802407 82802521 -135234637 - Charlie5 DNA MER1_type -2506 106 1 879 218 11 5 chr3 82804002 82804190 -135232968 + MER5A DNA MER1_type 1 189 0 376 259 36 9 chr3 82804233 82804345 -135232813 + MER103 DNA DNA 21 135 -31 1540 167 60 0 chr3 82804875 82805175 -135231983 - L1MC1 LINE L1 -8 6325 6008 442 298 0 0 chr3 82805998 82806119 -135231039 + MIR SINE MIR 110 230 -32 2067 108 31 0 chr3 82806992 82807278 -135229880 + AluSq SINE Alu 1 295 -18 420 71 0 0 chr3 82808393 82808449 -135228709 + (TG)n Simple_repeat Simple_repeat 2 57 0 250 254 32 0 chr3 82808545 82808608 -135228550 + CT-rich Low_complexity Low_complexity 3 67 0 268 232 134 0 chr3 82808608 82808690 -135228468 + MIR SINE MIR 44 136 -126 195 233 150 0 chr3 82809316 82809376 -135227782 + MIR SINE MIR 157 225 -37 203 225 67 108 chr3 82809974 82810052 -135227106 - MIR SINE MIR -97 165 92 838 252 37 0 chr3 82810052 82810266 -135226892 + MER58A DNA MER1_type 3 224 0 203 225 67 108 chr3 82810266 82810307 -135226851 - MIR SINE MIR -170 92 51 374 291 0 29 chr3 82810310 82810413 -135226745 + L2 LINE L2 3209 3308 -5 561 288 72 101 chr3 82810537 82810992 -135226166 - L2 LINE L2 -12 3260 2819 191 290 157 40 chr3 82811016 82811443 -135225715 - L2 LINE L2 -1035 2279 1803 275 331 110 67 chr3 82811454 82811934 -135225224 - L2 LINE L2 0 3313 2813 23 33 0 0 chr3 82813804 82813834 -135223324 + AT_rich Low_complexity Low_complexity 1 30 0 276 333 78 0 chr3 82814940 82815042 -135222116 + L2 LINE L2 3199 3308 -5 22 70 0 0 chr3 82815493 82815536 -135221622 + AT_rich Low_complexity Low_complexity 1 43 0 562 251 60 54 chr3 82816376 82816612 -135220546 + MIR SINE MIR 7 255 -7 21 0 0 0 chr3 82816706 82816727 -135220431 + AT_rich Low_complexity Low_complexity 1 21 0 491 178 33 0 chr3 82816755 82816845 -135220313 - L2 LINE L2 0 3313 3221 235 234 104 0 chr3 82817412 82817489 -135219669 + MIR SINE MIR 119 203 -59 2747 216 60 27 chr3 82817560 82818989 -135218169 - L1ME1 LINE L1 -4 6162 4699 1238 285 54 41 chr3 82820713 82821303 -135215855 - L2 LINE L2 -3 3310 2707 190 200 25 0 chr3 82821785 82821825 -135215333 - L2 LINE L2 -46 3226 3186 267 406 43 31 chr3 82822860 82823185 -135213973 + L2 LINE L2 2914 3242 -30 606 269 72 0 chr3 82824063 82824230 -135212928 + MIR SINE MIR 68 246 -16 928 269 29 4 chr3 82824250 82824495 -135212663 + MIR SINE MIR 6 256 -6 298 318 30 23 chr3 82824572 82824704 -135212454 + MIR SINE MIR 114 246 -16 21 0 0 0 chr3 82825073 82825094 -135212064 + AT_rich Low_complexity Low_complexity 1 21 0 368 329 86 50 chr3 82825682 82826263 -135210895 - L2 LINE L2 -453 2861 2260 319 203 14 0 chr3 82826432 82826501 -135210657 - MLT1L LTR MaLR -196 419 350 24 0 0 0 chr3 82827587 82827611 -135209547 + AT_rich Low_complexity Low_complexity 1 24 0 488 197 121 0 chr3 82827611 82827743 -135209415 - L1MD2 LINE L1 -7 6352 6205 218 291 40 75 chr3 82827743 82827942 -135209216 - L2 LINE L2 -568 2746 2555 200 271 24 35 chr3 82827966 82828051 -135209107 - L2 LINE L2 -10 3262 3179 595 291 63 16 chr3 82828069 82828323 -135208835 - Charlie8 DNA MER1_type -2131 286 21 358 277 141 6 chr3 82828361 82828538 -135208620 - MLT1H1 LTR MaLR -6 536 336 407 260 45 45 chr3 82828579 82828849 -135208309 - MLT1H1 LTR MaLR -287 268 2 648 174 195 0 chr3 82829308 82829457 -135207701 - MER45A DNA AcHobo 0 178 1 330 250 71 27 chr3 82829946 82830058 -135207100 - MER91C DNA MER1_type -23 117 1 762 256 85 14 chr3 82830269 82830492 -135206666 - MIR SINE MIR 0 262 24 183 82 20 41 chr3 82831365 82831414 -135205744 + (TA)n Simple_repeat Simple_repeat 2 49 0 344 330 85 40 chr3 82831635 82831811 -135205347 + MER5A DNA MER1_type 3 186 -3 266 0 29 0 chr3 82832059 82832093 -135205065 + (TTG)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr3 82832934 82832956 -135204202 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr3 82833171 82833194 -135203964 + (CAG)n Simple_repeat Simple_repeat 2 24 0 470 314 146 9 chr3 82833213 82833433 -135203725 - MIR SINE MIR -10 252 3 802 306 41 21 chr3 82835781 82836023 -135201135 - MIR SINE MIR -5 257 11 2278 36 0 0 chr3 82836035 82836309 -135200849 - L1PA4 LINE L1 0 6155 5882 3412 184 9 45 chr3 82836527 82837498 -135199660 + L1MB2 LINE L1 4670 5577 -594 1684 169 0 0 chr3 82837498 82837771 -135199387 + AluSx SINE Alu 25 297 -15 3412 184 9 45 chr3 82837771 82838109 -135199049 + L1MB2 LINE L1 5577 5925 -246 1657 126 0 47 chr3 82838109 82838422 -135198736 + L1MB2 LINE L1 5867 6169 -2 1672 209 10 45 chr3 82838642 82839267 -135197891 + L1MB2 LINE L1 5020 5607 -564 1369 200 0 7 chr3 82839267 82839542 -135197616 + AluSx SINE Alu 25 297 -15 1693 118 9 67 chr3 82839551 82839881 -135197277 + L1MB2 LINE L1 5615 5925 -246 1673 123 3 38 chr3 82839876 82840192 -135196966 + L1MB2 LINE L1 5867 6171 0 * 446 241 35 35 chr3 82840301 82840471 -135196687 + Charlie8 DNA MER1_type 56 225 -2192 180 0 0 0 chr3 82841026 82841046 -135196112 + (TGG)n Simple_repeat Simple_repeat 3 22 0 405 314 44 65 chr3 82842187 82842480 -135194678 - L1ME4a LINE L1 -85 6036 5750 2032 149 3 13 chr3 82842672 82842987 -135194171 - AluJb SINE Alu 0 312 1 752 194 16 141 chr3 82843054 82843302 -135193856 - MER20 DNA MER1_type -1 218 2 1356 264 35 15 chr3 82844341 82844841 -135192317 - L1ME3 LINE L1 -66 6096 5591 1876 189 0 0 chr3 82845115 82845421 -135191737 + AluJb SINE Alu 1 306 -6 2168 124 3 0 chr3 82845653 82845952 -135191206 - AluSx SINE Alu -12 300 1 2538 18 0 0 chr3 82846162 82846444 -135190714 - AluYb8 SINE Alu -3 315 34 21 0 0 0 chr3 82847149 82847170 -135189988 + AT_rich Low_complexity Low_complexity 1 21 0 438 207 101 72 chr3 82847710 82847918 -135189240 + MIR SINE MIR 49 262 0 226 283 50 25 chr3 82848972 82849092 -135188066 + MIR SINE MIR 140 262 0 23 33 0 0 chr3 82849104 82849134 -135188024 + AT_rich Low_complexity Low_complexity 1 30 0 1025 204 23 9 chr3 82849217 82849433 -135187725 + MER20 DNA MER1_type 1 219 0 207 250 0 0 chr3 82849729 82849773 -135187385 - L2 LINE L2 -2 3270 3227 1492 114 5 0 chr3 82849786 82849996 -135187162 - AluSp SINE Alu -2 311 101 1479 75 5 0 chr3 82849996 82850182 -135186976 - AluSp SINE Alu -126 187 1 22 0 0 0 chr3 82850927 82850949 -135186209 + AT_rich Low_complexity Low_complexity 1 22 0 199 232 18 27 chr3 82851352 82851464 -135185694 + CT-rich Low_complexity Low_complexity 1 111 0 22 0 0 0 chr3 82852200 82852222 -135184936 + AT_rich Low_complexity Low_complexity 1 22 0 213 259 9 18 chr3 82852624 82852736 -135184422 + CT-rich Low_complexity Low_complexity 1 111 0 384 274 139 56 chr3 82853785 82854037 -135183121 + L2 LINE L2 3041 3313 0 1713 192 3 17 chr3 82854042 82854339 -135182819 - AluJo SINE Alu -19 293 1 2339 94 3 7 chr3 82854466 82854764 -135182394 - AluSx SINE Alu -15 297 1 221 133 44 0 chr3 82856328 82856373 -135180785 + (TA)n Simple_repeat Simple_repeat 1 47 0 230 134 37 12 chr3 82856448 82856530 -135180628 + (TA)n Simple_repeat Simple_repeat 1 84 0 348 256 33 0 chr3 82856678 82856768 -135180390 + MER94 DNA DNA 38 130 -4 506 313 39 106 chr3 82856769 82857452 -135179706 - L2 LINE L2 -75 3197 2509 220 303 40 0 chr3 82859036 82859112 -135178046 + MIR SINE MIR 126 204 -58 382 274 53 18 chr3 82859116 82859229 -135177929 - L2 LINE L2 -5 3308 3192 525 236 45 45 chr3 82859431 82859609 -135177549 - MER5B DNA MER1_type 0 178 1 222 296 114 45 chr3 82860554 82860738 -135176420 + MIR SINE MIR 43 237 -25 228 136 0 45 chr3 82862614 82862658 -135174500 - MER75 DNA T2_type -4 500 459 1579 179 57 0 chr3 82862843 82863122 -135174036 - AluJo SINE Alu -17 295 1 192 40 0 0 chr3 82863161 82863186 -135173972 + (TG)n Simple_repeat Simple_repeat 2 26 0 615 249 135 11 chr3 82863259 82863444 -135173714 - MER77 LTR ERV1 -166 439 232 697 238 18 62 chr3 82863565 82863792 -135173366 - MER77 LTR ERV1 -388 217 1 809 306 42 70 chr3 82863795 82863809 -135173349 - L1MEc LINE L1 -5572 824 811 2319 152 7 53 chr3 82863809 82864262 -135172896 + Tigger2a DNA MER2_type 3 434 0 809 306 42 70 chr3 82864262 82865048 -135172110 - L1MEc LINE L1 -5585 811 46 630 281 43 8 chr3 82865075 82865310 -135171848 + MIR SINE MIR 19 261 -1 185 0 40 0 chr3 82866008 82866033 -135171125 + (TG)n Simple_repeat Simple_repeat 1 26 0 230 344 115 19 chr3 82866666 82866823 -135170335 + L2 LINE L2 2733 2904 -410 242 230 180 40 chr3 82867060 82867160 -135169998 + L2 LINE L2 3195 3308 -5 29 0 0 0 chr3 82867398 82867427 -135169731 + AT_rich Low_complexity Low_complexity 1 29 0 234 0 0 0 chr3 82868118 82868144 -135169014 + (CAAAA)n Simple_repeat Simple_repeat 4 29 0 2014 124 6 35 chr3 82868175 82868490 -135168668 + AluSx SINE Alu 1 306 -6 1064 183 77 15 chr3 82868527 82868800 -135168358 + MER33 DNA MER1_type 35 324 0 660 165 9 0 chr3 82868950 82869059 -135168099 + AluSg/x SINE Alu 177 286 -26 965 201 77 15 chr3 82869116 82869389 -135167769 + MER33 DNA MER1_type 35 324 0 270 56 0 0 chr3 82870004 82870040 -135167118 + (TG)n Simple_repeat Simple_repeat 2 37 0 207 114 0 0 chr3 82870763 82870798 -135166360 + (A)n Simple_repeat Simple_repeat 1 35 0 1891 138 30 13 chr3 82870836 82871134 -135166024 - AluSx SINE Alu -9 303 1 415 250 0 0 chr3 82871328 82871432 -135165726 + MER58C DNA MER1_type 112 215 0 252 261 12 124 chr3 82871507 82871668 -135165490 - L2 LINE L2 -1 3312 3170 309 246 30 116 chr3 82871873 82871991 -135165167 - L1M4 LINE L1 -3756 2390 2294 1746 143 82 0 chr3 82871991 82872270 -135164888 - AluSx SINE Alu -10 302 1 309 246 30 116 chr3 82872270 82872350 -135164808 - L1M4 LINE L1 -3852 2294 2209 1355 197 48 15 chr3 82872362 82872692 -135164466 - MLT1A2 LTR MaLR 0 374 34 542 345 84 4 chr3 82873252 82873478 -135163680 - MIR SINE MIR -14 248 5 465 217 43 87 chr3 82873679 82873817 -135163341 - L2 LINE L2 0 3313 3182 23 0 0 0 chr3 82874274 82874297 -135162861 + AT_rich Low_complexity Low_complexity 1 23 0 312 270 26 35 chr3 82874970 82875085 -135162073 + L1ME LINE L1 5530 5643 -478 794 165 6 71 chr3 82875328 82875360 -135161798 - FRAM SINE Alu -143 169 136 2567 88 11 14 chr3 82875360 82875714 -135161444 + THE1A LTR MaLR 1 353 -2 11420 98 9 6 chr3 82875716 82877291 -135159867 + THE1A-int LTR MaLR 1 1580 0 2813 68 3 3 chr3 82877291 82877646 -135159512 + THE1A LTR MaLR 1 355 0 794 165 6 71 chr3 82877646 82877779 -135159379 - FRAM SINE Alu -175 137 11 565 257 166 32 chr3 82877904 82878368 -135158790 + L1MC/D LINE L1 5255 5785 -1008 376 315 62 47 chr3 82879017 82879423 -135157735 + L1MC4a LINE L1 5494 5905 -1903 25 0 0 0 chr3 82879461 82879486 -135157672 + AT_rich Low_complexity Low_complexity 1 25 0 2331 112 0 0 chr3 82880442 82880745 -135156413 - AluSx SINE Alu -9 303 1 206 194 14 0 chr3 82881796 82881868 -135155290 + (TA)n Simple_repeat Simple_repeat 1 73 0 434 304 60 6 chr3 82881912 82882080 -135155078 - LTR67 LTR ERVL -7 550 374 337 210 0 0 chr3 82882207 82882269 -135154889 - LTR67 LTR ERVL -383 174 113 189 0 0 0 chr3 82883700 82883721 -135153437 + (T)n Simple_repeat Simple_repeat 1 21 0 270 0 0 0 chr3 82884160 82884190 -135152968 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 1819 141 60 0 chr3 82884387 82884671 -135152487 - AluSx SINE Alu -11 301 1 508 305 61 24 chr3 82884900 82885113 -135152045 + MIR SINE MIR 32 252 -10 220 111 44 0 chr3 82886148 82886193 -135150965 + (TTG)n Simple_repeat Simple_repeat 2 48 0 7892 64 4 6 chr3 82886202 82887211 -135149947 + LTR13 LTR ERVK 1 1007 0 2069 102 0 14 chr3 82887211 82887496 -135149662 - AluSx SINE Alu -31 281 1 879 219 9 36 chr3 82888144 82888363 -135148795 - MER20 DNA MER1_type -1 218 6 2243 108 0 0 chr3 82888556 82888844 -135148314 - AluSc SINE Alu -21 288 1 528 214 38 15 chr3 82889537 82889668 -135147490 + MIR SINE MIR 117 250 -12 1856 134 76 0 chr3 82889669 82889946 -135147212 - AluSg SINE Alu -12 298 1 252 261 12 124 chr3 82890520 82890681 -135146477 - L2 LINE L2 -1 3312 3170 1891 125 82 0 chr3 82891004 82891283 -135145875 - AluSx SINE Alu -10 302 1 229 188 38 62 chr3 82891283 82891363 -135145795 - L1MEc LINE L1 -4001 2395 2318 1591 179 42 9 chr3 82891375 82891705 -135145453 - MLT1A2 LTR MaLR 0 374 34 1684 209 124 74 chr3 82892518 82893204 -135143954 + LTR41 LTR ERVL 9 728 -45 346 264 19 38 chr3 82893818 82893924 -135143234 - MIR3 SINE MIR -31 177 74 1528 215 27 46 chr3 82894156 82894631 -135142527 - L1ME3A LINE L1 -12 6158 5693 242 342 112 0 chr3 82894711 82894872 -135142286 + MIR SINE MIR 72 250 -12 492 301 40 20 chr3 82895403 82895732 -135141426 - MLT1I LTR MaLR 0 409 40 224 213 40 0 chr3 82896658 82896733 -135140425 + (TA)n Simple_repeat Simple_repeat 1 78 0 237 33 0 0 chr3 82897045 82897075 -135140083 + (TG)n Simple_repeat Simple_repeat 2 31 0 1040 222 88 7 chr3 82897089 82897386 -135139772 + MER5C DNA MER1_type 4 324 0 321 299 11 0 chr3 82897615 82897702 -135139456 - L2 LINE L2 0 3313 3226 225 0 0 0 chr3 82897778 82897803 -135139355 + (CA)n Simple_repeat Simple_repeat 1 25 0 730 291 73 83 chr3 82898366 82898833 -135138325 + L2 LINE L2 2851 3312 -1 608 228 15 7 chr3 82899096 82899232 -135137926 + MIR SINE MIR 87 223 -39 193 327 19 0 chr3 82899273 82899325 -135137833 + L2 LINE L2 3202 3254 -18 291 273 23 39 chr3 82900012 82900140 -135137018 - L1ME3A LINE L1 -532 5638 5513 509 223 18 36 chr3 82900157 82900323 -135136835 - MLT1F LTR MaLR -4 538 376 241 253 21 53 chr3 82900393 82900488 -135136670 - MER96 DNA MER1_type? -1 174 83 220 346 79 39 chr3 82901956 82902083 -135135075 + L2 LINE L2 3121 3252 -20 5479 146 14 28 chr3 82902127 82903121 -135134037 - L1MA6 LINE L1 -1 6299 5293 1694 186 11 0 chr3 82903121 82903406 -135133752 - AluJo SINE Alu -7 305 18 5479 146 14 28 chr3 82903406 82904448 -135132710 - L1MA6 LINE L1 -1007 5293 4283 452 242 39 0 chr3 82904450 82904578 -135132580 - MER53 DNA DNA -56 133 1 222 259 52 0 chr3 82904583 82904641 -135132517 + L2 LINE L2 3248 3308 -5 726 269 108 91 chr3 82904863 82905410 -135131748 - LTR67 LTR ERVL 0 557 2 1071 231 57 0 chr3 82905718 82906016 -135131142 + MER46C DNA MER2_type 2 316 -22 2085 153 0 7 chr3 82908853 82909161 -135127997 - AluSx SINE Alu -6 306 1 189 0 0 0 chr3 82910978 82910999 -135126159 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 198 0 0 0 chr3 82911843 82911865 -135125293 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 3673 70 0 0 chr3 82911866 82912336 -135124822 - L1PA7 LINE L1 -17 6137 5668 3791 80 0 2 chr3 82912336 82912877 -135124281 + L1P LINE L1 4751 5290 -856 284 296 161 32 chr3 82912929 82913115 -135124043 + MER102b DNA MER1_type 118 327 -14 26 0 0 0 chr3 82913353 82913379 -135123779 + AT_rich Low_complexity Low_complexity 1 26 0 306 148 0 0 chr3 82913508 82913562 -135123596 + (T)n Simple_repeat Simple_repeat 1 54 0 650 195 8 8 chr3 82914029 82914157 -135123001 - L2 LINE L2 -1 3312 3185 263 304 80 27 chr3 82914475 82914587 -135122571 + L2 LINE L2 3183 3300 -13 2253 118 0 7 chr3 82914638 82914942 -135122216 + AluSx SINE Alu 1 302 -10 285 263 21 42 chr3 82915283 82915378 -135121780 + L2 LINE L2 3180 3272 0 248 200 250 0 chr3 82915595 82915655 -135121503 - MIR SINE MIR -171 91 17 26 339 0 0 chr3 82967190 82967302 -135069856 + GC_rich Low_complexity Low_complexity 1 112 0 40612 74 9 2 chr3 82967438 82972903 -135064255 + HERVL-A1 LTR ERVL 154 5654 0 2840 76 3 3 chr3 82972907 82973290 -135063868 + MLT2A1 LTR ERVL 5 387 -57 369 0 0 0 chr3 82973290 82973331 -135063827 + (TG)n Simple_repeat Simple_repeat 2 42 0 260 254 0 0 chr3 82973403 82973458 -135063700 + CT-rich Low_complexity Low_complexity 6 60 0 234 302 65 29 chr3 82974256 82974395 -135062763 - MER117 DNA MER1_type -51 146 3 321 308 37 0 chr3 82975063 82975170 -135061988 - MIR SINE MIR -60 148 38 1688 217 71 5 chr3 82975209 82975615 -135061543 - MER74A LTR ERVL 0 558 126 730 201 17 6 chr3 82975849 82976038 -135061120 + L1MB7 LINE L1 5981 6164 -2 433 301 102 0 chr3 82977295 82977461 -135059697 + MIR SINE MIR 71 253 -9 676 232 125 18 chr3 82977785 82978009 -135059149 + MIR SINE MIR 5 252 -10 1906 242 52 13 chr3 82978116 82978654 -135058504 - MLT1G LTR MaLR -1 589 31 180 0 0 0 chr3 82978712 82978732 -135058426 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2169 102 0 3 chr3 82978734 82979018 -135058140 - AluSp SINE Alu -30 283 1 2413 28 42 0 chr3 82979189 82979477 -135057681 - AluY SINE Alu -11 300 1 440 250 132 29 chr3 82980626 82980762 -135056396 - L2 LINE L2 0 3272 3123 21 36 0 0 chr3 82981533 82981561 -135055597 + AT_rich Low_complexity Low_complexity 1 28 0 333 298 89 0 chr3 82981807 82981931 -135055227 + L2 LINE L2 2949 3083 -230 248 280 10 40 chr3 82981984 82982084 -135055074 + MLT1J LTR MaLR 33 129 -382 595 273 120 28 chr3 82982126 82982342 -135054816 + MLT1J LTR MaLR 206 441 -70 284 167 19 0 chr3 82982498 82982552 -135054606 + MLT1J LTR MaLR 448 502 -9 256 274 48 32 chr3 82982566 82982690 -135054468 + L2 LINE L2 3118 3243 -70 337 270 0 0 chr3 82984151 82984251 -135052907 - LTR58 LTR ERV1 -230 449 350 209 354 46 0 chr3 82984426 82984491 -135052667 - L2 LINE L2 -67 3205 3138 601 237 130 12 chr3 82984638 82984807 -135052351 + MIR SINE MIR 40 228 -34 391 282 38 38 chr3 82984816 82984947 -135052211 - MIR SINE MIR -121 141 11 251 301 40 51 chr3 82984949 82985125 -135052033 + MIR SINE MIR 79 252 -10 21 0 0 0 chr3 82985125 82985146 -135052012 + AT_rich Low_complexity Low_complexity 1 21 0 2188 106 0 42 chr3 82985639 82985951 -135051207 + AluSp SINE Alu 1 299 -14 977 48 0 0 chr3 82987230 82987354 -135049804 - L1PA5 LINE L1 -3 6151 6028 235 0 28 28 chr3 82988876 82988912 -135048246 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 201 94 0 0 chr3 82988911 82988943 -135048215 + (GA)n Simple_repeat Simple_repeat 1 32 0 * 371 227 0 0 chr3 82989446 82989512 -135047646 - L2 LINE L2 0 3313 3248 3732 113 56 94 chr3 82989747 82990563 -135046595 + LTR1 LTR ERV1 1 785 0 523 338 0 0 chr3 82991503 82991636 -135045522 - L2 LINE L2 -1 3271 3139 413 252 38 76 chr3 82992221 82992483 -135044675 - L1MC4a LINE L1 -1962 5915 5664 801 261 89 27 chr3 82992557 82993215 -135043943 - L1MEc LINE L1 -3525 2690 2023 278 290 41 18 chr3 82993383 82993552 -135043606 - L1MEc LINE L1 -4594 1802 1630 308 267 75 33 chr3 82994604 82994724 -135042434 - MIR SINE MIR -64 144 20 644 294 92 28 chr3 82994901 82995337 -135041821 - MLT1H LTR MaLR 0 549 86 332 228 39 79 chr3 82996119 82996246 -135040912 - MIR SINE MIR -79 129 7 24630 38 5 1 chr3 82996338 83000160 -135036998 - L1PA4 LINE L1 -2 6153 2308 1412 136 67 105 chr3 83000339 83000729 -135036429 - THE1C LTR MaLR 0 375 1 1824 175 120 31 chr3 83001885 83002343 -135034815 + MLT1D LTR MaLR 1 499 -6 293 267 311 0 chr3 83002666 83002827 -135034331 + MIR SINE MIR 29 239 -23 258 81 0 0 chr3 83002827 83002864 -135034294 + (ATG)n Simple_repeat Simple_repeat 2 38 0 397 291 116 40 chr3 83002879 83003078 -135034080 + MIR SINE MIR 45 258 -4 376 306 29 35 chr3 83003693 83003866 -135033292 - MLT1K LTR MaLR -134 454 283 2279 66 7 3 chr3 83004676 83004993 -135032165 + AluY SINE Alu 1 318 0 26418 40 2 10 chr3 83005243 83009464 -135027694 - L1PA5 LINE L1 -2 6152 1945 425 226 20 0 chr3 83009476 83009578 -135027580 - MER103 DNA DNA -49 117 14 239 111 0 22 chr3 83010365 83010410 -135026748 + (TAA)n Simple_repeat Simple_repeat 1 44 0 311 380 5 54 chr3 83010412 83010633 -135026525 - MIR SINE MIR 0 262 53 1331 59 0 0 chr3 83011944 83012113 -135025045 + L1PA4 LINE L1 5987 6155 0 2298 87 0 17 chr3 83012850 83013148 -135024010 + AluY SINE Alu 1 293 -18 449 162 14 0 chr3 83013460 83013534 -135023624 - MER58A DNA MER1_type -28 79 5 2212 129 6 0 chr3 83014906 83015217 -135021941 - AluSq SINE Alu 0 313 1 2056 138 83 23 chr3 83015305 83015702 -135021456 - Tigger2a DNA MER2_type -5 429 9 282 200 24 35 chr3 83016027 83016112 -135021046 + CT-rich Low_complexity Low_complexity 1 84 0 1003 123 0 11 chr3 83017725 83017904 -135019254 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 418 289 195 0 chr3 83018545 83018735 -135018423 - MIR SINE MIR -34 228 2 1950 131 17 13 chr3 83019142 83019440 -135017718 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr3 83019874 83019896 -135017262 + AT_rich Low_complexity Low_complexity 1 22 0 420 228 106 33 chr3 83020134 83020314 -135016844 - MIR SINE MIR -4 258 66 4697 154 26 15 chr3 83020352 83021221 -135015937 + L1MB4 LINE L1 5284 6162 -18 219 288 0 0 chr3 83021522 83021581 -135015577 + L2 LINE L2 3250 3308 -5 471 301 36 12 chr3 83022843 83023009 -135014149 + LTR16C LTR ERVL 320 489 -2 469 311 67 69 chr3 83023295 83023829 -135013329 - L2 LINE L2 -649 2665 2133 2318 106 0 0 chr3 83024234 83024536 -135012622 + AluSx SINE Alu 2 303 -9 1755 260 78 55 chr3 83024599 83025200 -135011958 - MLT1E3 LTR MaLR -2 622 8 656 311 107 57 chr3 83025974 83026479 -135010679 + MLT1K LTR MaLR 2 531 -57 277 244 78 102 chr3 83027148 83027353 -135009805 + MLT1K LTR MaLR 378 577 -11 519 276 45 32 chr3 83027355 83027511 -135009647 - MER117 DNA MER1_type -29 168 11 1686 184 46 64 chr3 83027784 83028223 -135008935 + MSTB1 LTR MaLR 1 431 -1 374 233 116 98 chr3 83028634 83028849 -135008309 - LTR16A1 LTR ERVL -7 450 232 1245 193 55 39 chr3 83028992 83029267 -135007891 + MLT2D LTR ERVL 91 373 -41 459 0 0 0 chr3 83029267 83029318 -135007840 + (CA)n Simple_repeat Simple_repeat 1 51 0 1245 193 55 39 chr3 83029318 83029353 -135007805 + MLT2D LTR ERVL 373 406 -8 411 286 58 13 chr3 83029721 83029875 -135007283 + MIR SINE MIR 28 188 -74 336 321 69 19 chr3 83029936 83030095 -135007063 - MIR SINE MIR -32 230 64 218 213 106 0 chr3 83031135 83031182 -135005976 + MIR SINE MIR 110 162 -46 711 122 12 2 chr3 83031348 83031517 -135005641 - MER2 DNA MER2_type -134 211 1 40 37 0 0 chr3 83034487 83034541 -135002617 + AT_rich Low_complexity Low_complexity 1 54 0 279 134 62 38 chr3 83034547 83034843 -135002315 + (TATAA)n Simple_repeat Simple_repeat 1 303 0 56 39 0 0 chr3 83034855 83034932 -135002226 + AT_rich Low_complexity Low_complexity 1 77 0 184 111 52 59 chr3 83035243 83035378 -135001780 + (TTATA)n Simple_repeat Simple_repeat 2 135 0 21 57 0 0 chr3 83036620 83036655 -135000503 + AT_rich Low_complexity Low_complexity 1 35 0 1626 222 97 17 chr3 83036771 83037235 -134999923 - MLT1D LTR MaLR 0 505 5 2029 128 3 26 chr3 83037459 83037763 -134999395 - AluSg SINE Alu -1 309 13 1359 207 131 52 chr3 83037803 83038170 -134998988 - MSTD LTR MaLR 0 396 1 367 298 24 40 chr3 83038283 83038407 -134998751 - L2 LINE L2 -33 3280 3159 629 283 26 26 chr3 83038407 83038598 -134998560 + MIR SINE MIR 51 241 -21 245 235 0 0 chr3 83038776 83038827 -134998331 + (CTA)n Simple_repeat Simple_repeat 3 53 0 536 311 50 27 chr3 83038830 83039052 -134998106 - MIR SINE MIR -7 255 29 210 302 0 0 chr3 83039241 83039294 -134997864 - L2 LINE L2 0 3272 3220 265 348 11 11 chr3 83039563 83039652 -134997506 + MIR SINE MIR 4 92 -170 294 194 0 0 chr3 83039765 83039827 -134997331 + (CAT)n Simple_repeat Simple_repeat 2 63 0 2246 119 3 0 chr3 83040995 83041306 -134995852 + AluSx SINE Alu 1 312 0 401 235 113 44 chr3 83041386 83041548 -134995610 + L1MC4a LINE L1 5562 5678 -443 525 39 51 26 chr3 83041548 83041626 -134995532 - MADE1 DNA Mariner 0 80 1 401 235 113 44 chr3 83041626 83041762 -134995396 + L1MC4a LINE L1 5678 5803 -318 1743 197 0 0 chr3 83041962 83042266 -134994892 + AluJo SINE Alu 6 309 -3 650 134 253 124 chr3 83042795 83042989 -134994169 - MER20 DNA MER1_type 0 219 1 670 260 27 97 chr3 83044815 83045115 -134992043 - MER102a DNA MER1_type -6 324 46 691 195 88 66 chr3 83045120 83045438 -134991720 + L1MC5 LINE L1 7610 7934 -27 352 264 11 33 chr3 83046385 83046476 -134990682 - L2 LINE L2 -2 3270 3182 219 69 0 0 chr3 83046691 83046720 -134990438 + (TC)n Simple_repeat Simple_repeat 2 30 0 180 111 0 0 chr3 83047765 83047792 -134989366 + (CATATA)n Simple_repeat Simple_repeat 3 29 0 216 0 0 0 chr3 83047798 83047822 -134989336 + (TG)n Simple_repeat Simple_repeat 2 25 0 318 323 79 0 chr3 83048937 83049064 -134988094 - MIR SINE MIR -98 164 28 245 256 106 11 chr3 83049105 83049207 -134987951 - MIR SINE MIR -63 145 44 2698 176 68 2 chr3 83049432 83049914 -134987244 - MLT2B1 LTR ERVL 0 520 7 408 350 78 23 chr3 83050316 83050533 -134986625 - L2 LINE L2 -22 3250 3022 924 98 23 0 chr3 83050761 83050894 -134986264 + MER20 DNA MER1_type 66 201 -18 249 322 101 10 chr3 83051234 83051433 -134985725 - L2 LINE L2 -834 2480 2264 1119 241 53 7 chr3 83051477 83051776 -134985382 + MER102b DNA MER1_type 1 313 -28 1047 280 61 21 chr3 83052233 83052469 -134984689 + L2 LINE L2 2911 3169 -144 325 213 12 12 chr3 83052469 83052549 -134984609 - MER116 DNA Mariner 0 80 1 1047 280 61 21 chr3 83052549 83052687 -134984471 + L2 LINE L2 3169 3300 -13 249 286 0 25 chr3 83053855 83054021 -134983137 + MIR SINE MIR 1 237 -25 225 315 102 0 chr3 83054186 83054294 -134982864 + L2 LINE L2 3190 3308 -5 1054 138 41 60 chr3 83055743 83055961 -134981197 + MER20 DNA MER1_type 6 219 0 185 56 0 56 chr3 83057271 83057307 -134979851 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 26 50 0 0 chr3 83057474 83057514 -134979644 + AT_rich Low_complexity Low_complexity 1 40 0 185 233 23 0 chr3 83059448 83059491 -134977667 - L2 LINE L2 -8 3305 3262 208 215 231 31 chr3 83059651 83059716 -134977442 - MIR SINE MIR -112 150 73 734 254 37 0 chr3 83059767 83059956 -134977202 - MIR SINE MIR -21 241 46 848 204 56 52 chr3 83060268 83060537 -134976621 - L1MD2 LINE L1 -2 6357 6088 206 254 45 0 chr3 83062217 83062284 -134974874 + CT-rich Low_complexity Low_complexity 2 71 0 219 114 0 0 chr3 83062782 83062817 -134974341 + (A)n Simple_repeat Simple_repeat 1 35 0 489 183 19 19 chr3 83063510 83063614 -134973544 - L2 LINE L2 -18 3295 3192 203 249 9 9 chr3 83063714 83063827 -134973331 + CT-rich Low_complexity Low_complexity 1 113 0 251 257 122 47 chr3 83063903 83064051 -134973107 + MIR SINE MIR 2 160 -102 246 116 0 0 chr3 83064150 83064193 -134972965 + (TTA)n Simple_repeat Simple_repeat 2 44 0 188 404 0 0 chr3 83065240 83065292 -134971866 - L2 LINE L2 -94 3178 3127 195 42 0 0 chr3 83065492 83065516 -134971642 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chr3 83066022 83066044 -134971114 + AT_rich Low_complexity Low_complexity 1 22 0 418 246 254 0 chr3 83068858 83068996 -134968162 + MER96 DNA MER1_type? 1 173 -2 24 0 0 0 chr3 83069020 83069044 -134968114 + AT_rich Low_complexity Low_complexity 1 24 0 1125 193 52 0 chr3 83069055 83069268 -134967890 + MER58A DNA MER1_type 1 224 0 212 284 164 0 chr3 83069301 83069368 -134967790 + MIR SINE MIR 34 111 -151 599 191 184 0 chr3 83069372 83069524 -134967634 - MER63A DNA MER1_type -1 209 30 2294 151 0 3 chr3 83069556 83069921 -134967237 + MER47A DNA MER2_type 3 366 0 571 245 67 51 chr3 83069993 83070262 -134966896 + LTR16A1 LTR ERVL 48 387 -70 431 236 86 86 chr3 83070262 83070436 -134966722 - MER96 DNA MER1_type 0 175 2 571 245 67 51 chr3 83070436 83070509 -134966649 + LTR16A1 LTR ERVL 387 457 0 387 251 130 67 chr3 83071201 83071250 -134965908 + L2 LINE L2 3075 3119 -194 2327 86 0 0 chr3 83071250 83071553 -134965605 - AluY SINE Alu -8 303 1 387 251 130 67 chr3 83071553 83071726 -134965432 + L2 LINE L2 3119 3311 -2 184 241 0 35 chr3 83071755 83071813 -134965345 + L2 LINE L2 3258 3313 0 241 302 111 11 chr3 83072762 83072879 -134964279 + MIR SINE MIR 16 144 -67 871 258 16 6 chr3 83072965 83073147 -134964011 - MIR SINE MIR -67 195 12 183 80 0 0 chr3 83074065 83074090 -134963068 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 431 269 113 7 chr3 83074892 83075033 -134962125 - MIR SINE MIR -9 253 98 505 281 63 54 chr3 83076934 83077155 -134960003 - MIR SINE MIR -10 252 30 28 0 0 0 chr3 83077974 83078002 -134959156 + AT_rich Low_complexity Low_complexity 1 28 0 999 309 101 19 chr3 83078103 83078579 -134958579 - MLT1K LTR MaLR -72 516 2 205 241 72 12 chr3 83078794 83078877 -134958281 + MIR SINE MIR 113 200 -62 672 303 37 18 chr3 83079406 83079624 -134957534 - MIR SINE MIR -1 261 40 233 326 11 0 chr3 83079758 83079847 -134957311 + MIR SINE MIR 123 212 -50 21 36 0 0 chr3 83080905 83080933 -134956225 + AT_rich Low_complexity Low_complexity 1 28 0 200 35 35 0 chr3 83082106 83082135 -134955023 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 203 277 80 80 chr3 83082182 83082294 -134954864 + MIR SINE MIR 33 144 -64 256 109 18 36 chr3 83082394 83082449 -134954709 - L1MA3 LINE L1 0 6305 6252 204 67 0 0 chr3 83083035 83083065 -134954093 + (T)n Simple_repeat Simple_repeat 1 30 0 181 260 13 39 chr3 83083227 83083304 -134953854 + L2 LINE L2 3168 3242 -71 318 346 75 0 chr3 83083346 83083479 -134953679 - MIR SINE MIR -3 259 117 452 312 97 59 chr3 83084231 83084823 -134952335 + L2 LINE L2 2429 3037 -235 4509 155 23 13 chr3 83084836 83085611 -134951547 - LTR39 LTR ERV1 0 783 1 581 312 59 5 chr3 83085718 83085920 -134951238 + MIR SINE MIR 49 261 -1 1589 269 80 28 chr3 83086053 83086405 -134950753 - MLT1E LTR MaLR -26 567 176 1904 154 0 0 chr3 83086405 83086685 -134950473 + AluJo SINE Alu 6 285 -27 1589 269 80 28 chr3 83086685 83086867 -134950291 - MLT1E LTR MaLR -417 176 5 2264 111 0 3 chr3 83088498 83088805 -134948353 - AluSg SINE Alu -4 306 1 660 298 58 33 chr3 83089066 83089817 -134947341 - L1ME3A LINE L1 -227 5943 5185 1964 162 0 10 chr3 83090289 83090586 -134946572 - AluJb SINE Alu -18 294 1 240 349 85 9 chr3 83091888 83091994 -134945164 - MIR SINE MIR -62 146 33 596 288 162 18 chr3 83092118 83092563 -134944595 - Tigger8 DNA MER2_type -133 533 25 764 237 84 63 chr3 83093131 83093418 -134943740 - MER102a DNA MER1_type 0 330 38 290 211 0 0 chr3 83093696 83093748 -134943410 - L3 LINE CR1 -72 1505 1454 231 219 0 0 chr3 83093871 83093935 -134943223 - L1MC4 LINE L1 -1339 6703 6640 * 233 227 45 23 chr3 83093919 83094007 -134943151 + L1MC4 LINE L1 6614 6703 -1339 211 91 23 23 chr3 83094014 83094058 -134943100 + (TA)n Simple_repeat Simple_repeat 2 45 0 254 49 0 49 chr3 83094197 83094238 -134942920 + (TTTTG)n Simple_repeat Simple_repeat 4 42 0 1689 161 70 7 chr3 83094503 83094789 -134942369 - AluJb SINE Alu -8 304 1 286 306 63 24 chr3 83096175 83096427 -134940731 - L1MC4 LINE L1 -1879 5929 5668 272 287 46 0 chr3 83096871 83096958 -134940200 + L1MC/D LINE L1 5611 5701 -2107 339 236 47 38 chr3 83096990 83097120 -134940038 + L1MC4 LINE L1 1995 6983 -1339 594 269 192 29 chr3 83097642 83098017 -134939141 - L2 LINE L2 -6 3307 2872 1127 218 48 13 chr3 83098548 83098860 -134938298 + MER33 DNA MER1_type 1 323 -1 342 125 0 0 chr3 83098876 83098932 -134938226 + MER58 DNA MER1_type 50 105 -2315 2103 123 3 16 chr3 83098932 83099242 -134937916 + AluSx SINE Alu 1 306 -6 671 216 78 10 chr3 83099288 83099492 -134937666 + MER58 DNA MER1_type 2203 2420 0 233 285 95 44 chr3 83099503 83099640 -134937518 + MIR SINE MIR 49 192 -70 197 224 41 0 chr3 83101913 83101962 -134935196 - MIR SINE MIR -124 138 88 351 308 169 6 chr3 83102104 83102276 -134934882 + MIR SINE MIR 7 206 -56 22 56 0 0 chr3 83102323 83102359 -134934799 + AT_rich Low_complexity Low_complexity 1 36 0 1292 73 5 54 chr3 83102368 83102572 -134934586 + L1PB1 LINE L1 5958 6151 0 2621 203 74 20 chr3 83102926 83103521 -134933637 - MER82 DNA MER2_type 0 653 27 2416 81 3 0 chr3 83104503 83104810 -134932348 + AluSg1 SINE Alu 1 308 -1 2053 118 35 0 chr3 83104824 83104952 -134932206 + AluSg SINE Alu 1 123 -187 240 35 0 0 chr3 83104952 83104981 -134932177 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2053 118 35 0 chr3 83104981 83105141 -134932017 + AluSg SINE Alu 123 299 -11 2071 150 26 16 chr3 83106215 83106601 -134930557 - MLT1B LTR MaLR 0 390 1 2079 218 67 24 chr3 83106767 83107317 -134929841 - MER119 DNA MER1_type -8 575 2 2140 87 0 4 chr3 83107364 83107641 -134929517 - AluSq SINE Alu 0 313 38 466 173 0 0 chr3 83107724 83107805 -134929353 - L1MC1 LINE L1 -248 6085 6005 210 143 0 0 chr3 83108637 83108672 -134928486 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 26 0 0 0 chr3 83109969 83109995 -134927163 + AT_rich Low_complexity Low_complexity 1 26 0 354 23 0 0 chr3 83112292 83112335 -134924823 + (CA)n Simple_repeat Simple_repeat 2 44 0 518 256 192 20 chr3 83112481 83112684 -134924474 + MIR SINE MIR 25 262 0 391 195 11 0 chr3 83114039 83114126 -134923032 + MER103 DNA DNA 20 107 -59 213 121 0 0 chr3 83114163 83114196 -134922962 + (TG)n Simple_repeat Simple_repeat 2 34 0 297 339 115 15 chr3 83115031 83115477 -134921681 - MLT1K LTR MaLR -66 522 3 5227 121 91 17 chr3 83115745 83116322 -134920836 + Tigger3b DNA MER2_type 1 681 -2347 2008 144 0 3 chr3 83116322 83116634 -134920524 - AluSx SINE Alu -1 311 1 5227 121 91 17 chr3 83116634 83117033 -134920125 + Tigger3b DNA MER2_type 681 1049 -182 838 278 121 14 chr3 83117182 83117553 -134919605 - MLT1K LTR MaLR -58 530 120 298 244 92 46 chr3 83117645 83117776 -134919382 + L2 LINE L2 2994 3130 -183 926 96 6 0 chr3 83117789 83117946 -134919212 + (TTCTCC)n Simple_repeat Simple_repeat 5 162 0 24 0 0 0 chr3 83118060 83118084 -134919074 + AT_rich Low_complexity Low_complexity 1 24 0 1845 189 24 5 chr3 83118890 83119266 -134917892 - MER58D DNA MER1_type -3 383 1 474 246 70 41 chr3 83119269 83119440 -134917718 + MLT1J LTR MaLR 1 176 -335 3179 106 9 9 chr3 83119601 83119993 -134917165 + MLT2A1 LTR ERVL 1 395 -49 342 0 0 0 chr3 83119993 83120031 -134917127 + (TA)n Simple_repeat Simple_repeat 2 39 0 3179 106 9 9 chr3 83120031 83120082 -134917076 + MLT2A1 LTR ERVL 394 444 0 39163 77 11 3 chr3 83120087 83125084 -134912074 + HERVL-A1 LTR ERVL 1 5037 -617 434 306 29 35 chr3 83125236 83125409 -134911749 + MLT1K LTR MaLR 283 454 -134 259 260 58 39 chr3 83125523 83125627 -134911531 + MLT1K LTR MaLR 449 554 -34 380 291 116 40 chr3 83126024 83126223 -134910935 - MIR SINE MIR -4 258 45 258 81 0 0 chr3 83126238 83126275 -134910883 + (CAT)n Simple_repeat Simple_repeat 2 38 0 275 267 311 0 chr3 83126275 83126436 -134910722 - MIR SINE MIR -23 239 29 2012 173 120 31 chr3 83126759 83127217 -134909941 - MLT1D LTR MaLR -6 499 1 230 220 0 0 chr3 83128251 83128301 -134908857 + L1MA1 LINE L1 6253 6302 0 1578 136 67 105 chr3 83128373 83128763 -134908395 + THE1C LTR MaLR 1 375 0 26373 40 1 24 chr3 83128923 83132801 -134904357 + L1PA5 LINE L1 2289 6152 -2 2403 62 0 3 chr3 83133050 83133369 -134903789 - AluY SINE Alu 0 318 1 265 189 87 71 chr3 83134369 83134496 -134902662 + L1ME LINE L1 5754 5882 -239 1714 194 0 7 chr3 83134701 83135005 -134902153 + AluJo SINE Alu 6 307 -5 239 123 0 53 chr3 83185966 83186023 -134851135 + (CAAGG)n Simple_repeat Simple_repeat 5 58 0 2261 65 0 50 chr3 83186219 83186540 -134850618 + AluY SINE Alu 1 305 -6 253 250 37 28 chr3 83187076 83187184 -134849974 + MER113 DNA MER1_type? 35 143 -378 1644 144 0 81 chr3 83187189 83187509 -134849649 + AluJo SINE Alu 1 294 -18 26 0 0 0 chr3 83187509 83187535 -134849623 + AT_rich Low_complexity Low_complexity 1 26 0 1871 143 55 25 chr3 83187908 83188272 -134848886 + THE1C LTR MaLR 1 375 0 2773 70 20 0 chr3 83188749 83189106 -134848052 + THE1B LTR MaLR 1 364 0 262 240 29 106 chr3 83189228 83189332 -134847826 + L2 LINE L2 3175 3270 -2 2419 276 62 43 chr3 83189923 83191235 -134845923 + L1MEc LINE L1 41 1378 -5018 2178 233 23 10 chr3 83191778 83192294 -134844864 - LTR45 LTR ERV1 0 525 3 269 262 131 0 chr3 83192931 83193015 -134844143 + MIR SINE MIR 40 134 -74 905 283 54 64 chr3 83193024 83193431 -134843727 - LTR33 LTR ERVL 0 521 119 2098 183 50 35 chr3 83193448 83193834 -134843324 + MLT1C LTR MaLR 1 397 -70 2016 126 73 25 chr3 83193834 83194192 -134842966 + THE1C LTR MaLR 1 375 0 2098 183 50 35 chr3 83194192 83194263 -134842895 + MLT1C LTR MaLR 397 465 -2 30 27 0 0 chr3 83195037 83195074 -134842084 + AT_rich Low_complexity Low_complexity 1 37 0 361 299 29 17 chr3 83195165 83195339 -134841819 - L1ME LINE L1 -355 5766 5591 2825 241 55 21 chr3 83195518 83196380 -134840778 - L1ME LINE L1 -872 5274 4384 251 154 0 19 chr3 83196410 83196462 -134840696 + CT-rich Low_complexity Low_complexity 3 53 0 1199 176 40 122 chr3 83198178 83198507 -134838651 + AluJb SINE Alu 1 302 0 275 229 41 17 chr3 83198906 83199019 -134838139 + L1ME LINE L1 5704 5815 -306 411 283 17 34 chr3 83200479 83200708 -134836450 + CT-rich Low_complexity Low_complexity 1 225 0 205 343 49 20 chr3 83201508 83201610 -134835548 - L2 LINE L2 -4 3309 3205 449 259 0 0 chr3 83202029 83202145 -134835013 - MER53 DNA DNA -73 116 1 399 41 0 0 chr3 83202921 83202970 -134834188 + (TA)n Simple_repeat Simple_repeat 1 49 0 852 211 106 5 chr3 83204904 83205103 -134832055 + MER20 DNA MER1_type 1 219 0 542 306 43 14 chr3 83206701 83206910 -134830248 + MIR SINE MIR 1 215 -47 454 311 46 20 chr3 83206956 83207152 -134830006 + MIR SINE MIR 30 230 -32 290 226 71 48 chr3 83208762 83208846 -134828312 - L2 LINE L2 0 3272 3187 359 327 64 26 chr3 83208943 83209099 -134828059 - MIR3 SINE MIR -28 180 19 2273 105 3 0 chr3 83209892 83210188 -134826970 - AluSp SINE Alu -16 297 1 714 302 145 19 chr3 83210258 83210566 -134826592 + L2 LINE L2 2841 3217 -96 2243 101 3 0 chr3 83210566 83210862 -134826296 - AluSq SINE Alu -16 297 1 714 302 145 19 chr3 83210862 83210973 -134826185 + L2 LINE L2 3217 3313 0 369 294 21 77 chr3 83211001 83211144 -134826014 + MER102b DNA MER1_type 203 337 -4 389 39 0 0 chr3 83211940 83211991 -134825167 - MADE1 DNA Mariner 0 80 30 381 22 0 0 chr3 83213202 83213248 -134823910 + (TG)n Simple_repeat Simple_repeat 1 46 0 2121 189 76 20 chr3 83214772 83215232 -134821926 - L1ME2 LINE L1 -96 6068 5583 262 237 0 0 chr3 83216223 83216282 -134820876 - MER117 DNA MER1_type -20 177 119 375 105 0 0 chr3 83216508 83216565 -134820593 + (TG)n Simple_repeat Simple_repeat 1 57 0 1576 86 131 4 chr3 83216980 83217224 -134819934 + L1PA10 LINE L1 5890 6164 -4 22 70 0 0 chr3 83217586 83217629 -134819529 + AT_rich Low_complexity Low_complexity 1 43 0 1765 133 50 29 chr3 83217694 83218008 -134819150 + AluJb SINE Alu 1 320 0 758 236 22 83 chr3 83218014 83218243 -134818915 + MIR SINE MIR 27 241 -21 445 254 36 0 chr3 83218553 83218663 -134818495 + L2 LINE L2 3195 3308 -5 350 317 49 6 chr3 83218751 83218934 -134818224 - L1ME LINE L1 -299 5822 5632 1001 252 18 0 chr3 83219090 83219308 -134817850 + MER58A DNA MER1_type 2 223 -1 1489 271 105 20 chr3 83220401 83221055 -134816103 - L1ME3 LINE L1 -2 6160 5446 481 354 39 13 chr3 83221155 83221384 -134815774 + MIR SINE MIR 15 249 -13 511 348 68 14 chr3 83221641 83221848 -134815310 - MIR SINE MIR -40 222 5 1496 216 118 36 chr3 83222401 83222868 -134814290 - MLT1D LTR MaLR 0 505 1 3780 123 65 11 chr3 83223004 83223624 -134813534 + MER39B LTR ERV1 1 653 0 235 299 58 52 chr3 83223646 83223820 -134813338 + L2 LINE L2 2685 2859 -455 233 396 20 20 chr3 83223824 83223925 -134813233 + MIR SINE MIR 12 112 -150 183 351 20 66 chr3 83224084 83224232 -134812926 + L2 LINE L2 2918 3058 -214 302 360 20 20 chr3 83224232 83224379 -134812779 - MER5A DNA MER1_type 0 189 43 605 179 24 24 chr3 83224458 83224581 -134812577 - LOR1b LTR ERV1 -2 459 337 698 182 23 0 chr3 83224608 83224740 -134812418 + LOR1b LTR ERV1 327 461 0 619 298 240 17 chr3 83224842 83225340 -134811818 + L2 LINE L2 2708 3313 0 240 233 150 0 chr3 83225746 83225806 -134811352 + L2 LINE L2 3241 3309 -4 199 284 53 42 chr3 83226000 83226095 -134811063 + MIR SINE MIR 104 199 -63 201 147 0 0 chr3 83226230 83226264 -134810894 + (A)n Simple_repeat Simple_repeat 1 34 0 186 43 0 0 chr3 83226857 83226880 -134810278 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1973 136 53 11 chr3 83226924 83227359 -134809799 + L1PA13 LINE L1 5711 6163 0 207 313 122 43 chr3 83229601 83229716 -134807442 + L2 LINE L2 3133 3256 -16 348 219 0 0 chr3 83229914 83229978 -134807180 - Charlie3 DNA MER1_type -2607 103 40 21 36 0 0 chr3 83230489 83230517 -134806641 + AT_rich Low_complexity Low_complexity 1 28 0 258 340 0 10 chr3 83230704 83230807 -134806351 + GA-rich Low_complexity Low_complexity 3 104 0 198 357 29 0 chr3 83230852 83230922 -134806236 - L2 LINE L2 -8 3264 3193 442 297 83 42 chr3 83232072 83232385 -134804773 + HAL1 LINE L1 2176 2501 -6 29 60 0 0 chr3 83232410 83232460 -134804698 + AT_rich Low_complexity Low_complexity 1 50 0 1521 196 0 11 chr3 83232475 83232755 -134804403 - AluJo SINE Alu -35 277 1 32 43 0 0 chr3 83232808 83232854 -134804304 + AT_rich Low_complexity Low_complexity 1 46 0 21 36 0 0 chr3 83232941 83232969 -134804189 + AT_rich Low_complexity Low_complexity 1 28 0 232 267 12 12 chr3 83233384 83233470 -134803688 + GA-rich Low_complexity Low_complexity 2 87 0 259 212 0 19 chr3 83233997 83234082 -134803076 + L1ME3 LINE L1 6093 6177 -1 435 304 74 76 chr3 83234145 83234619 -134802539 - L2 LINE L2 0 3313 2841 431 313 133 13 chr3 83235225 83235458 -134801700 + MIR SINE MIR 2 262 0 201 308 46 15 chr3 83235953 83236018 -134801140 + MIR SINE MIR 84 150 -112 21 0 0 0 chr3 83237953 83237974 -134799184 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr3 83238337 83238372 -134798786 + AT_rich Low_complexity Low_complexity 1 35 0 1006 296 80 59 chr3 83238959 83239309 -134797849 - L2 LINE L2 0 3313 2972 2150 132 20 3 chr3 83239309 83239658 -134797500 - THE1A LTR MaLR 0 355 1 11273 94 11 20 chr3 83239659 83241254 -134795904 - THE1A-int LTR MaLR 0 1580 1 2363 112 8 11 chr3 83241254 83241610 -134795548 - THE1A LTR MaLR 0 355 1 1006 296 80 59 chr3 83241610 83241987 -134795171 - L2 LINE L2 -340 2973 2561 207 313 75 12 chr3 83242058 83242138 -134795020 - MIR3 SINE MIR -18 190 106 9099 161 13 34 chr3 83243096 83245252 -134791906 - L1MA3 LINE L1 0 7724 5650 1955 147 42 36 chr3 83245252 83245612 -134791546 + THE1B LTR MaLR 3 364 0 9099 161 13 34 chr3 83245612 83246529 -134790629 - L1MA3 LINE L1 -2074 5650 4715 24342 53 3 2 chr3 83246546 83250442 -134786716 + L1PA5 LINE L1 2255 6154 0 1532 223 34 8 chr3 83250457 83250906 -134786252 + L1ME LINE L1 5219 5678 -488 2627 215 25 19 chr3 83250939 83251661 -134785497 - L1MA3 LINE L1 -2889 4676 3951 34870 39 23 2 chr3 83251663 83257075 -134780083 + L1PA3 LINE L1 663 6192 0 20465 152 27 12 chr3 83257075 83260963 -134776195 - L1MA3 LINE L1 -3604 3961 18 344 222 35 90 chr3 83261068 83261212 -134775946 + L1M4 LINE L1 5093 5228 -918 439 46 0 259 chr3 83261293 83261401 -134775757 - MADE1 DNA Mariner 0 80 1 644 211 27 7 chr3 83261481 83261628 -134775530 + L1MC2 LINE L1 3951 4100 -2046 2583 78 93 12 chr3 83261628 83262038 -134775120 + LTR7 LTR ERV1 1 443 -7 3541 99 19 24 chr3 83262045 83262620 -134774538 + HERVH LTR ERV1 1 572 -7141 * 14099 97 25 19 chr3 83262595 83264856 -134772302 + HERVH LTR ERV1 714 2987 -4726 5918 85 1 2 chr3 83264850 83265705 -134771453 + HERVH LTR ERV1 3140 3993 -3720 * 4059 152 0 1 chr3 83265707 83266370 -134770788 + HERVH LTR ERV1 4488 5149 -2564 1363 120 19 0 chr3 83266371 83266587 -134770571 + HERVH LTR ERV1 5600 5819 -1894 1950 110 52 16 chr3 83266587 83266951 -134770207 + HERVH LTR ERV1 7324 7700 -13 5767 205 34 13 chr3 83266951 83266964 -134770194 + L1MC2 LINE L1 4077 4088 -2256 2740 85 92 5 chr3 83266964 83267376 -134769782 + LTR7 LTR ERV1 1 448 -2 5767 205 34 13 chr3 83267376 83269568 -134767590 + L1MC2 LINE L1 4088 6335 -9 2082 229 152 10 chr3 83269578 83270439 -134766719 + L1ME2 LINE L1 5186 6155 -9 22 0 0 0 chr3 83270548 83270570 -134766588 + AT_rich Low_complexity Low_complexity 1 22 0 210 290 72 14 chr3 83271499 83271568 -134765590 + L2 LINE L2 2991 3063 -250 10000 84 3 6 chr3 83271673 83273069 -134764089 + L1P LINE L1 3745 5136 -1010 257 340 130 0 chr3 83273104 83273204 -134763954 + L2 LINE L2 3160 3272 0 1883 267 41 12 chr3 83273501 83274163 -134762995 - L1M4 LINE L1 -1184 4962 4282 2598 37 3 0 chr3 83274291 83274590 -134762568 - AluY SINE Alu -11 300 1 239 154 0 19 chr3 83275449 83275501 -134761657 + GA-rich Low_complexity Low_complexity 1 51 0 2137 66 22 7 chr3 83276345 83276662 -134760496 + AluY SINE Alu 5 325 0 348 339 47 52 chr3 83276767 83276959 -134760199 - MIR3 SINE MIR -15 193 3 382 213 28 14 chr3 83276971 83277112 -134760046 + CT-rich Low_complexity Low_complexity 5 147 0 1152 131 60 6 chr3 83277123 83277306 -134759852 + MER20 DNA MER1_type 6 198 -21 443 268 115 35 chr3 83277761 83278074 -134759084 - LTR37A LTR ERV1 -6 420 83 315 208 78 58 chr3 83278725 83278879 -134758279 - L1ME4a LINE L1 -2 6119 5963 34 55 0 0 chr3 83279064 83279119 -134758039 + AT_rich Low_complexity Low_complexity 1 55 0 21 0 0 0 chr3 83279637 83279658 -134757500 + AT_rich Low_complexity Low_complexity 1 21 0 2353 85 0 0 chr3 83282111 83282404 -134754754 + AluY SINE Alu 2 294 -17 1675 176 6 28 chr3 83282715 83283034 -134754124 + AluJb SINE Alu 1 312 0 243 88 0 0 chr3 83283034 83283068 -134754090 + (GA)n Simple_repeat Simple_repeat 1 34 0 483 18 0 0 chr3 83283075 83283131 -134754027 + (GGAAA)n Simple_repeat Simple_repeat 4 59 0 581 256 88 52 chr3 83284326 83284576 -134752582 + MLT1K LTR MaLR 322 580 -8 343 301 44 22 chr3 83284964 83285100 -134752058 + MER117 DNA MER1_type 59 197 0 286 224 35 0 chr3 83287323 83287381 -134749777 - MIR SINE MIR -64 144 85 193 282 204 19 chr3 83287454 83287557 -134749601 - MIR SINE MIR -74 188 67 203 56 56 0 chr3 83289036 83289072 -134748086 + A-rich Low_complexity Low_complexity 4 41 0 22 0 0 0 chr3 83289673 83289695 -134747463 + AT_rich Low_complexity Low_complexity 1 22 0 2434 124 6 3 chr3 83290152 83290515 -134746643 - THE1B LTR MaLR 0 364 1 197 300 50 80 chr3 83291013 83291113 -134746045 - L2 LINE L2 -38 3234 3138 342 296 0 9 chr3 83291411 83291519 -134745639 - MER103 DNA DNA -58 108 2 951 126 58 37 chr3 83292026 83292217 -134744941 + L1PA16 LINE L1 5963 6157 -9 344 343 36 0 chr3 83292392 83292529 -134744629 - MIR3 SINE MIR -31 177 36 2201 139 11 3 chr3 83292872 83293224 -134743934 + THE1A LTR MaLR 1 355 0 11393 95 6 8 chr3 83293224 83294808 -134742350 + THE1A-int LTR MaLR 1 1580 0 2287 118 14 3 chr3 83294811 83295159 -134741999 + THE1A LTR MaLR 4 355 0 986 258 106 68 chr3 83295197 83295854 -134741304 - L1MEc LINE L1 -4171 2225 1594 1193 155 26 0 chr3 83295854 83296080 -134741078 - L1MA8 LINE L1 -2 6289 6058 986 258 106 68 chr3 83296080 83297461 -134739697 - L1MEc LINE L1 -4802 1594 38 760 278 33 0 chr3 83298329 83298541 -134738617 - MER58A DNA MER1_type -1 223 5 229 165 10 41 chr3 83299076 83299173 -134737985 + (TA)n Simple_repeat Simple_repeat 2 95 0 2037 153 0 0 chr3 83299180 83299468 -134737690 - AluSx SINE Alu -24 288 1 23 54 0 0 chr3 83299513 83299550 -134737608 + AT_rich Low_complexity Low_complexity 1 37 0 214 316 21 11 chr3 83299598 83299693 -134737465 + MIR SINE MIR 148 243 -19 2115 138 3 3 chr3 83301087 83301398 -134735760 - AluSx SINE Alu -1 311 1 1931 167 76 17 chr3 83301424 83301832 -134735326 - MSTB1 LTR MaLR 0 432 1 1878 116 66 30 chr3 83302163 83302464 -134734694 - AluSx SINE Alu 0 312 1 262 333 0 0 chr3 83302721 83302790 -134734368 - MIR SINE MIR -117 145 77 423 274 92 12 chr3 83304216 83304380 -134732778 + L1ME LINE L1 5484 5660 -461 219 211 0 0 chr3 83304401 83304439 -134732719 + (CA)n Simple_repeat Simple_repeat 1 38 0 947 219 10 5 chr3 83304548 83304744 -134732414 + AluJb SINE Alu 105 301 -11 381 361 27 16 chr3 83305330 83305513 -134731645 + L2 LINE L2 2203 2387 -927 285 316 0 41 chr3 83305489 83305587 -134731571 + L2 LINE L2 3219 3312 -1 * 274 182 104 26 chr3 83305882 83305959 -134731199 - MIR SINE MIR 0 262 180 318 306 57 38 chr3 83306031 83306188 -134730970 - MIR SINE MIR -91 171 12 211 213 43 0 chr3 83306699 83306746 -134730412 + GA-rich Low_complexity Low_complexity 2 50 0 554 194 22 0 chr3 83307017 83307151 -134730007 - MER96B DNA MER1_type? -36 381 245 998 212 10 0 chr3 83307342 83307545 -134729613 - L1MB3 LINE L1 -8 6175 5971 538 313 211 27 chr3 83307897 83308601 -134728557 + L2 LINE L2 2465 3309 -4 281 268 153 30 chr3 83308639 83308792 -134728366 - MIR SINE MIR -3 259 76 378 343 89 19 chr3 83309236 83309449 -134727709 - MIR SINE MIR -33 229 2 524 277 102 21 chr3 83309620 83309855 -134727303 + MIR SINE MIR 9 262 0 2124 140 70 39 chr3 83311281 83311696 -134725462 + MSTA LTR MaLR 1 428 0 216 293 98 0 chr3 83311818 83311900 -134725258 - MIR SINE MIR -85 177 88 1130 284 36 25 chr3 83311997 83312353 -134724805 + L2 LINE L2 1663 2022 -1292 433 244 67 37 chr3 83312353 83312519 -134724639 - MLT1H1 LTR MaLR -325 224 11 2060 146 34 65 chr3 83312783 83313227 -134723931 - MSTB1 LTR MaLR 0 432 3 837 280 23 0 chr3 83313650 83313868 -134723290 - MER58A DNA MER1_type -1 223 1 184 259 62 49 chr3 83316494 83316575 -134720583 + L2 LINE L2 3191 3272 0 186 229 43 43 chr3 83316802 83316872 -134720286 - MIR SINE MIR -75 187 118 949 174 68 0 chr3 83317034 83317224 -134719934 - MER3 DNA MER1_type -5 204 2 25 0 0 0 chr3 83318688 83318713 -134718445 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr3 83318819 83318844 -134718314 + AT_rich Low_complexity Low_complexity 1 25 0 599 175 58 0 chr3 83319556 83319659 -134717499 - MER20 DNA MER1_type -110 109 1 648 283 43 48 chr3 83319964 83320424 -134716734 - L1MC5 LINE L1 -194 7767 7310 450 253 102 34 chr3 83320454 83320869 -134716289 - L1MC4a LINE L1 -456 7352 6997 4413 41 0 4 chr3 83320964 83321506 -134715652 + L1PA5 LINE L1 5615 6154 0 376 341 44 0 chr3 83321523 83321728 -134715430 - L1MC4a LINE L1 -1095 6713 6500 1166 249 107 37 chr3 83322277 83322679 -134714479 + LTR16A LTR ERVL 1 430 -20 359 132 62 132 chr3 83322685 83322770 -134714388 + MER53 DNA DNA 2 78 -111 1927 97 0 0 chr3 83322770 83323017 -134714141 + AluSg SINE Alu 35 328 0 424 0 0 0 chr3 83323017 83323064 -134714094 + (TAAA)n Simple_repeat Simple_repeat 2 96 0 359 132 62 132 chr3 83323064 83323106 -134714052 + MER53 DNA DNA 78 121 -68 521 296 25 0 chr3 83323217 83323376 -134713782 - L1MC4a LINE L1 -2067 5741 5579 536 298 77 44 chr3 83323666 83324661 -134712497 - L1ME4a LINE L1 -206 5915 4881 298 305 55 8 chr3 83325207 83325335 -134711823 + L1ME4a LINE L1 5956 6089 -32 5748 233 93 24 chr3 83326885 83327829 -134709329 + L1MDa LINE L1 2 880 -5660 2058 121 3 0 chr3 83327829 83328131 -134709027 + AluSp SINE Alu 1 303 0 5748 233 93 24 chr3 83328131 83329276 -134707882 + L1MDa LINE L1 880 2411 -4129 452 295 6 0 chr3 83329274 83329440 -134707718 + L1M4 LINE L1 5134 5300 -846 * 1894 136 43 0 chr3 83329447 83329726 -134707432 + AluSx SINE Alu 5 295 -17 200 132 26 0 chr3 83329729 83329767 -134707391 + A-rich Low_complexity Low_complexity 5 43 0 538 179 29 16 chr3 83329767 83329909 -134707249 + L1M4 LINE L1 3846 3994 -2152 7446 146 12 19 chr3 83329925 83332360 -134704798 + L1MA4A LINE L1 3868 6292 -11 752 251 33 29 chr3 83332368 83332611 -134704547 + L1M4 LINE L1 4006 4249 -1897 2679 220 51 39 chr3 83332705 83333529 -134703629 + L1M4 LINE L1 4181 5014 -1132 255 275 160 30 chr3 83333535 83333804 -134703354 - L1ME4a LINE L1 -29 6092 5789 907 208 60 28 chr3 83333819 83334136 -134703022 + L1M4 LINE L1 5042 5368 -778 2968 133 2 2 chr3 83334139 83334612 -134702546 + L1MA4 LINE L1 5478 5950 -350 24 0 0 0 chr3 83334634 83334658 -134702500 + AT_rich Low_complexity Low_complexity 1 24 0 1770 174 20 14 chr3 83334658 83335009 -134702149 + L1MA4 LINE L1 5938 6290 -10 5165 201 58 66 chr3 83335021 83335753 -134701405 + L1MC3 LINE L1 5308 6044 -1741 2932 9 0 0 chr3 83335753 83336071 -134701087 + AluYb8 SINE Alu 1 318 0 5165 201 58 66 chr3 83336071 83336897 -134700261 + L1MC3 LINE L1 6044 6854 -931 961 244 9 4 chr3 83336896 83337125 -134700033 + L1MC3 LINE L1 6031 6260 -1525 * 736 273 70 83 chr3 83337453 83338020 -134699138 + HAL1b LINE L1 303 862 -486 237 33 0 0 chr3 83338214 83338244 -134698914 + (CA)n Simple_repeat Simple_repeat 1 30 0 2068 156 46 19 chr3 83338465 83338881 -134698277 - L1 LINE L1 -1750 4396 3970 224 303 25 57 chr3 83339034 83339156 -134698002 - MER5A DNA MER1_type -22 167 50 216 194 0 0 chr3 83339350 83339386 -134697772 + (CATA)n Simple_repeat Simple_repeat 2 37 0 401 325 100 15 chr3 83340894 83341094 -134696064 + MIR SINE MIR 18 234 -28 1803 243 24 5 chr3 83343605 83344025 -134693133 + MER63B DNA MER1_type 7 434 -2 1221 133 0 15 chr3 83344312 83344507 -134692651 - L1PA8A LINE L1 0 6131 5940 1033 245 54 68 chr3 83344519 83344943 -134692215 + MER113 DNA MER1_type? 87 504 -17 183 308 22 22 chr3 83345047 83345138 -134692020 + MIR SINE MIR 76 166 -96 22 56 0 0 chr3 83345549 83345585 -134691573 + AT_rich Low_complexity Low_complexity 1 36 0 339 272 82 7 chr3 83345686 83345833 -134691325 + L1ME4a LINE L1 5961 6118 -3 864 281 124 44 chr3 83346208 83346956 -134690202 - HAL1 LINE L1 -1092 1415 608 879 251 119 42 chr3 83347062 83347492 -134689666 - LTR16B LTR ERVL 0 464 2 4676 197 71 31 chr3 83347750 83349309 -134687849 - L1MD1 LINE L1 0 6636 5011 2606 202 50 45 chr3 83349328 83350120 -134687038 - L1MD1 LINE L1 -4329 2211 1416 1864 230 39 28 chr3 83350127 83350587 -134686571 - L1MD1 LINE L1 -6055 485 21 607 354 30 32 chr3 83351038 83351377 -134685781 + L2 LINE L2 2885 3222 -91 2190 108 7 0 chr3 83352646 83352942 -134684216 - AluSq SINE Alu -15 298 1 770 275 46 93 chr3 83353165 83353377 -134683781 + L2 LINE L2 2709 2929 -384 1307 227 57 20 chr3 83353377 83353729 -134683429 + MLT1A1 LTR MaLR 1 365 0 770 275 46 93 chr3 83353729 83353972 -134683186 + L2 LINE L2 2929 3125 -188 2010 159 0 0 chr3 83353972 83354274 -134682884 - AluSx SINE Alu -10 302 1 770 275 46 93 chr3 83354274 83354455 -134682703 + L2 LINE L2 3125 3313 0 23 0 0 0 chr3 83355299 83355322 -134681836 + AT_rich Low_complexity Low_complexity 1 23 0 10371 189 47 50 chr3 83355518 83357206 -134679952 + L1MC3 LINE L1 4914 6604 -1181 4125 155 91 7 chr3 83357206 83357968 -134679190 - LTR1B LTR ERV1 0 826 1 10371 189 47 50 chr3 83357968 83358260 -134678898 + L1MC3 LINE L1 6604 6895 -890 284 246 0 14 chr3 83358260 83358329 -134678829 + MLT1F1 LTR MaLR 42 109 -458 10371 189 47 50 chr3 83358329 83358962 -134678196 + L1MC3 LINE L1 6895 7784 -1 180 176 0 29 chr3 83360190 83360224 -134676934 - L2 LINE L2 -20 3293 3261 588 272 119 57 chr3 83360245 83360580 -134676578 - MLT1L LTR MaLR -133 482 127 333 269 29 29 chr3 83360999 83361103 -134676055 - MIR SINE MIR -74 188 85 2680 191 48 17 chr3 83361109 83361628 -134675530 - MER68 LTR ERV1 -7 555 17 9630 59 1 1 chr3 83361628 83363628 -134673530 - L1PA5 LINE L1 -1 6153 4141 2680 191 48 17 chr3 83363628 83363646 -134673512 - MER68 LTR ERV1 -545 17 1 182 286 22 66 chr3 83363801 83363892 -134673266 - MIR SINE MIR -130 132 46 30 59 0 0 chr3 83363937 83363988 -134673170 + AT_rich Low_complexity Low_complexity 1 51 0 30 0 0 0 chr3 83364119 83364149 -134673009 + AT_rich Low_complexity Low_complexity 1 30 0 273 239 9 18 chr3 83364797 83364910 -134672248 + (TTATA)n Simple_repeat Simple_repeat 2 113 0 * 410 135 5 93 chr3 83364845 83365038 -134672120 + (TTA)n Simple_repeat Simple_repeat 1 176 0 396 0 0 0 chr3 83365173 83365217 -134671941 + (CA)n Simple_repeat Simple_repeat 1 44 0 21 0 0 0 chr3 83365651 83365672 -134671486 + AT_rich Low_complexity Low_complexity 1 21 0 369 284 40 120 chr3 83365694 83365908 -134671250 - MLT1K LTR MaLR -14 574 381 1603 179 13 20 chr3 83365908 83366209 -134670949 - AluJb SINE Alu -13 299 1 369 284 40 120 chr3 83366209 83366244 -134670914 - MLT1K LTR MaLR -207 381 345 279 0 0 0 chr3 83366529 83366560 -134670598 + (A)n Simple_repeat Simple_repeat 1 31 0 1715 184 0 3 chr3 83367644 83367937 -134669221 + AluJb SINE Alu 2 293 -19 22 35 0 0 chr3 83367988 83368017 -134669141 + AT_rich Low_complexity Low_complexity 1 29 0 184 312 56 72 chr3 83368513 83368638 -134668520 - L2 LINE L2 -2 3270 3148 351 301 42 36 chr3 83368685 83368851 -134668307 - MIR SINE MIR -72 190 24 228 191 0 0 chr3 83369047 83369089 -134668069 - L2 LINE L2 -3 3310 3269 504 211 0 0 chr3 83369512 83369607 -134667551 + MER5B DNA MER1_type 1 95 -83 342 281 18 44 chr3 83369870 83369884 -134667274 + L2 LINE L2 3199 3212 -101 1926 152 31 0 chr3 83369884 83370173 -134666985 - AluJb SINE Alu -14 298 1 342 281 18 44 chr3 83370173 83370272 -134666886 + L2 LINE L2 3212 3309 -4 1557 261 54 24 chr3 83370510 83371051 -134666107 + L1ME1 LINE L1 5601 6157 -9 1794 157 0 0 chr3 83371365 83371632 -134665526 - AluSx SINE Alu -44 268 2 1957 92 8 0 chr3 83371874 83372135 -134665023 + AluSc SINE Alu 33 295 -14 180 152 0 0 chr3 83372639 83372672 -134664486 + (CA)n Simple_repeat Simple_repeat 2 34 0 300 388 25 12 chr3 83374353 83374595 -134662563 + MIR SINE MIR 17 261 -1 1068 305 41 32 chr3 83374665 83375108 -134662050 - MLT1J2 LTR MaLR -2 448 2 218 386 62 44 chr3 83375430 83375702 -134661456 + L2 LINE L2 2995 3271 -1 270 121 66 55 chr3 83376495 83376586 -134660572 + (TTATA)n Simple_repeat Simple_repeat 2 93 0 807 297 7 37 chr3 83376614 83376883 -134660275 + MIR SINE MIR 2 262 0 304 55 254 0 chr3 83376884 83376939 -134660219 + MADE1 DNA Mariner 1 69 -11 425 368 13 13 chr3 83376939 83377173 -134659985 + L2 LINE L2 1783 2016 -1298 2386 93 0 0 chr3 83377781 83378082 -134659076 - AluSx SINE Alu -11 301 1 340 313 55 31 chr3 83378243 83378371 -134658787 + L2 LINE L2 3141 3271 -1 251 277 63 55 chr3 83381180 83381325 -134655833 + MIR3 SINE MIR 1 152 -61 341 279 0 0 chr3 83381503 83381582 -134655576 + MER5A DNA MER1_type 80 158 -31 363 141 84 0 chr3 83382633 83382704 -134654454 - MADE1 DNA Mariner 0 80 4 187 364 61 20 chr3 83382947 83383046 -134654112 + L2 LINE L2 3123 3225 -47 * 485 300 58 55 chr3 83383034 83383291 -134653867 + MIR SINE MIR 5 262 0 198 344 0 0 chr3 83383345 83383406 -134653752 + L3 LINE CR1 1516 1576 -1 260 302 198 0 chr3 83383751 83383847 -134653311 + L2 LINE L2 3153 3267 -5 739 193 6 60 chr3 83384086 83384252 -134652906 - FRAM SINE Alu -9 157 1 366 293 32 48 chr3 83384332 83384520 -134652638 - HAL1b LINE L1 -834 514 330 527 321 146 20 chr3 83386550 83387295 -134649863 - L2 LINE L2 -194 3119 2278 273 368 37 24 chr3 83387288 83387584 -134649574 - L2 LINE L2 -224 3089 2788 * 1995 160 0 3 chr3 83387696 83388003 -134649155 + AluSx SINE Alu 1 306 -6 26 30 0 0 chr3 83390491 83390524 -134646634 + AT_rich Low_complexity Low_complexity 1 33 0 188 67 33 0 chr3 83391144 83391174 -134645984 + (TA)n Simple_repeat Simple_repeat 2 32 0 188 315 141 11 chr3 83391433 83391525 -134645633 + L2 LINE L2 3210 3313 0 316 308 114 3 chr3 83392245 83392570 -134644588 - L1ME4a LINE L1 -44 6077 5717 448 298 15 22 chr3 83392737 83392889 -134644269 - MIR SINE MIR -67 141 4 336 310 172 53 chr3 83394661 83395074 -134642084 - L2 LINE L2 -430 2884 2423 1433 181 67 22 chr3 83395950 83396249 -134640909 - AluJb SINE Alu 0 313 3 272 319 78 9 chr3 83396303 83396419 -134640739 + MIR SINE MIR 32 155 -107 587 224 50 116 chr3 83396424 83396701 -134640457 + MLT1L LTR MaLR 15 273 -342 659 304 76 18 chr3 83396801 83397077 -134640081 + MLT1L LTR MaLR 321 612 -3 196 309 21 43 chr3 83397215 83397309 -134639849 + L2 LINE L2 3214 3305 -8 21 36 0 0 chr3 83397624 83397652 -134639506 + AT_rich Low_complexity Low_complexity 1 28 0 1640 148 87 16 chr3 83398106 83398472 -134638686 + Charlie4a DNA MER1_type 76 467 -41 180 0 0 0 chr3 83398601 83398621 -134638537 + (T)n Simple_repeat Simple_repeat 1 20 0 183 80 0 0 chr3 83398914 83398939 -134638219 + (TG)n Simple_repeat Simple_repeat 1 25 0 180 222 44 0 chr3 83399238 83399283 -134637875 - MIR SINE MIR 0 262 216 * 266 286 53 53 chr3 83399255 83399388 -134637770 - L2 LINE L2 -23 3290 3158 337 281 83 33 chr3 83399425 83399546 -134637612 - MIR SINE MIR -72 190 64 228 245 0 0 chr3 83399933 83399986 -134637172 + MER117 DNA MER1_type 37 89 -108 721 226 60 20 chr3 83400303 83400502 -134636656 - MIR SINE MIR -41 221 15 42250 38 21 1 chr3 83400583 83406610 -134630548 + L1PA3 LINE L1 4 6155 0 32 26 0 0 chr3 83406615 83406654 -134630504 + AT_rich Low_complexity Low_complexity 1 39 0 1123 103 0 38 chr3 83406751 83406936 -134630222 - L1PA13 LINE L1 -1 6162 5985 2087 262 71 38 chr3 83408265 83409054 -134628104 - L1MEc LINE L1 -4801 1595 756 2396 118 36 14 chr3 83409054 83409410 -134627748 + THE1B LTR MaLR 1 364 0 2087 262 71 38 chr3 83409410 83409768 -134627390 - L1MEc LINE L1 -5640 756 411 927 245 75 30 chr3 83409775 83410106 -134627052 - L1MEc LINE L1 -6014 382 37 1830 171 3 0 chr3 83410161 83410448 -134626710 + AluSx SINE Alu 1 288 -24 189 107 0 0 chr3 83410457 83410485 -134626673 + (CAT)n Simple_repeat Simple_repeat 2 29 0 797 256 20 49 chr3 83410839 83411085 -134626073 - MIR SINE MIR 0 262 24 234 191 0 0 chr3 83411141 83411188 -134625970 + GA-rich Low_complexity Low_complexity 4 50 0 321 245 102 34 chr3 83412729 83412876 -134624282 + MER103 DNA DNA 7 163 -3 521 15 15 0 chr3 83413104 83413170 -134623988 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 2437 241 28 18 chr3 83413173 83413776 -134623382 - MLT2F LTR ERVL -54 609 1 1549 220 63 12 chr3 83415739 83416170 -134620988 + L1ME1 LINE L1 5656 6108 -58 323 187 39 103 chr3 83416087 83416242 -134620916 + L1MA10 LINE L1 6180 6324 -10 * 495 247 23 63 chr3 83416269 83416443 -134620715 - MIR SINE MIR -1 261 95 1376 302 72 40 chr3 83417846 83418823 -134618335 + L1MEc LINE L1 38 1012 -5203 246 32 0 0 chr3 83418823 83418854 -134618304 + (CA)n Simple_repeat Simple_repeat 2 32 0 1376 302 72 40 chr3 83418854 83419724 -134617434 + L1MEc LINE L1 1012 1853 -4362 1121 151 9 36 chr3 83419732 83419951 -134617207 - Tigger1 DNA MER2_type -4 2414 2202 733 187 0 53 chr3 83419948 83420098 -134617060 - Tigger1 DNA MER2_type -2276 142 1 * 433 271 50 17 chr3 83420125 83420306 -134616852 + L1MEc LINE L1 1884 2070 -4326 23 33 0 0 chr3 83420972 83421002 -134616156 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 83422571 83422592 -134614566 + AT_rich Low_complexity Low_complexity 1 21 0 1607 181 6 49 chr3 83423809 83424134 -134613024 - AluJo SINE Alu 0 312 2 593 316 36 0 chr3 83426309 83426477 -134610681 - MIR SINE MIR -77 185 12 2146 121 0 0 chr3 83426652 83426941 -134610217 + AluSx SINE Alu 1 289 -23 37 39 0 0 chr3 83426941 83426992 -134610166 + AT_rich Low_complexity Low_complexity 1 51 0 513 234 16 31 chr3 83427680 83427808 -134609350 + MIR3 SINE MIR 5 130 -78 352 381 28 28 chr3 83427966 83428181 -134608977 - MIR SINE MIR -46 216 2 1348 177 51 65 chr3 83428967 83429261 -134607897 + AluJb SINE Alu 7 296 -16 381 176 0 0 chr3 83430017 83430085 -134607073 - Charlie8 DNA MER1_type -2251 166 99 233 87 0 43 chr3 83430089 83430135 -134607023 + (CAA)n Simple_repeat Simple_repeat 2 45 0 212 143 0 0 chr3 83430291 83430326 -134606832 + (TC)n Simple_repeat Simple_repeat 2 36 0 189 147 0 0 chr3 83430326 83430360 -134606798 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 228 200 0 0 chr3 83430387 83430437 -134606721 + (TA)n Simple_repeat Simple_repeat 2 51 0 1954 132 4 4 chr3 83430908 83431215 -134605943 + AluSx SINE Alu 1 307 0 191 342 61 26 chr3 83431269 83431383 -134605775 + MIR3 SINE MIR 40 157 -51 484 251 71 110 chr3 83431385 83431739 -134605419 + MER102b DNA MER1_type 1 340 -1 460 114 13 13 chr3 83431777 83431856 -134605302 + MADE1 DNA Mariner 1 79 -1 23 42 0 21 chr3 83431906 83431925 -134605233 + AT_rich Low_complexity Low_complexity 1 19 -28 2692 82 6 0 chr3 83431925 83432291 -134604867 - L1PA7 LINE L1 0 6154 5787 23 42 0 21 chr3 83432291 83432319 -134604839 + AT_rich Low_complexity Low_complexity 19 47 0 544 335 98 39 chr3 83432985 83433305 -134603853 - L1M4 LINE L1 -3019 3127 2827 2092 187 20 0 chr3 83433305 83433700 -134603458 - MER57A LTR ERV1 0 403 1 544 335 98 39 chr3 83433700 83433971 -134603187 - L1M4 LINE L1 -3319 2827 2501 1492 109 23 31 chr3 83434338 83434475 -134602683 + L1MC1 LINE L1 6070 6206 -127 2029 116 3 16 chr3 83434475 83434785 -134602373 - AluSx SINE Alu -6 306 1 1492 109 23 31 chr3 83434785 83434903 -134602255 + L1MC1 LINE L1 6206 6323 -10 402 202 16 16 chr3 83434915 83435039 -134602119 + GA-rich Low_complexity Low_complexity 6 129 0 22 35 0 0 chr3 83436872 83436901 -134600257 + AT_rich Low_complexity Low_complexity 1 29 0 354 320 68 7 chr3 83436939 83437217 -134599941 + L1ME LINE L1 5522 5816 -305 425 242 105 83 chr3 83437226 83437438 -134599720 - L2 LINE L2 -22 3291 3070 807 205 22 70 chr3 83437438 83437667 -134599491 - MER20 DNA MER1_type -1 218 1 425 242 105 83 chr3 83437667 83437731 -134599427 - L2 LINE L2 -243 3070 3009 1121 242 4 16 chr3 83437839 83438083 -134599075 + MIR SINE MIR 1 241 -21 27 0 0 0 chr3 83438088 83438115 -134599043 + AT_rich Low_complexity Low_complexity 1 27 0 273 250 16 16 chr3 83438180 83438304 -134598854 + (TA)n Simple_repeat Simple_repeat 2 125 0 215 353 101 0 chr3 83438626 83438745 -134598413 - L2 LINE L2 -1 3271 3141 517 316 46 23 chr3 83439120 83439294 -134597864 + MIR SINE MIR 35 212 -50 585 157 10 0 chr3 83441332 83441434 -134595724 + FLAM_A SINE Alu 34 136 -6 1714 162 0 65 chr3 83441462 83441783 -134595375 + AluJb SINE Alu 1 300 -12 239 350 40 10 chr3 83442325 83442425 -134594733 + L2 LINE L2 3154 3256 -16 665 139 16 53 chr3 83442650 83442837 -134594321 + GA-rich Low_complexity Low_complexity 1 180 0 1235 47 0 42 chr3 83442837 83443205 -134593953 + (GGGAA)n Simple_repeat Simple_repeat 1 352 0 389 113 75 45 chr3 83443206 83443339 -134593819 + GA-rich Low_complexity Low_complexity 3 139 0 315 256 22 109 chr3 83444827 83444964 -134592194 + MIR SINE MIR 23 147 -115 230 351 45 0 chr3 83444977 83445088 -134592070 + MIR SINE MIR 125 240 -22 736 255 71 5 chr3 83445122 83445306 -134591852 + MER20 DNA MER1_type 1 196 -23 474 186 73 102 chr3 83445863 83446040 -134591118 - MER5B DNA MER1_type -2 176 5 230 348 11 11 chr3 83446494 83446583 -134590575 + L2 LINE L2 3161 3249 -23 1299 172 90 54 chr3 83446607 83446939 -134590219 + MER2 DNA MER2_type 1 344 0 209 283 18 115 chr3 83447181 83447294 -134589864 - MIR3 SINE MIR -22 186 85 331 329 107 37 chr3 83448771 83448987 -134588171 + MIR SINE MIR 15 245 -17 734 321 14 53 chr3 83449089 83449444 -134587714 - MER102b DNA MER1_type 0 341 1 569 278 70 37 chr3 83451685 83451872 -134585286 + MIR SINE MIR 56 248 -14 327 193 44 61 chr3 83451984 83452098 -134585060 - Charlie7 DNA MER1_type -29 2583 2472 1223 264 150 14 chr3 83452101 83452593 -134584565 - Charlie7 DNA MER1_type -1939 673 115 52 17 0 0 chr3 83453077 83453136 -134584022 + AT_rich Low_complexity Low_complexity 1 59 0 304 257 27 0 chr3 83453174 83453248 -134583910 - LTR67 LTR ERVL -381 176 101 2262 62 10 7 chr3 83453578 83453868 -134583290 + AluY SINE Alu 1 291 -20 211 191 128 0 chr3 83453881 83453928 -134583230 - MIR SINE MIR -33 229 177 21 57 0 0 chr3 83455726 83455761 -134581397 + AT_rich Low_complexity Low_complexity 1 35 0 837 155 45 26 chr3 83506247 83506402 -134530756 + FRAM SINE Alu 12 169 -7 616 206 68 6 chr3 83506428 83506589 -134530569 - MLT1H1 LTR MaLR -7 548 382 182 271 42 21 chr3 83506882 83506930 -134530228 - MIR SINE MIR -118 90 42 199 336 43 43 chr3 83507290 83507406 -134529752 - MIR SINE MIR -128 134 19 571 252 7 0 chr3 83507554 83507689 -134529469 - Charlie1 DNA MER1_type 0 2761 2626 * 809 250 27 0 chr3 83507688 83507908 -134529250 - Charlie1 DNA MER1_type -2528 233 8 343 314 24 30 chr3 83507916 83508085 -134529073 + L1MEd LINE L1 39 206 -5913 229 354 39 39 chr3 83508202 83508383 -134528775 + L1MEd LINE L1 315 495 -5624 431 325 12 31 chr3 83508398 83508558 -134528600 + L1MEd LINE L1 569 725 -5394 830 235 33 5 chr3 83508756 83508969 -134528189 + L1ME3A LINE L1 5504 5722 -448 255 227 0 0 chr3 83508966 83509032 -134528126 + L1ME3A LINE L1 6068 6133 -37 * 2683 73 0 0 chr3 83509062 83509416 -134527742 + THE1B-int LTR MaLR 1192 1545 -35 1282 93 44 40 chr3 83509421 83509647 -134527511 + THE1B LTR MaLR 1 227 -137 9340 101 20 3 chr3 83509751 83511132 -134526026 + THE1B-int LTR MaLR 177 1580 0 2187 118 60 20 chr3 83511134 83511482 -134525676 + THE1B LTR MaLR 3 364 0 264 30 0 0 chr3 83511507 83511540 -134525618 + (CA)n Simple_repeat Simple_repeat 2 34 0 290 277 71 38 chr3 83511731 83511915 -134525243 + L1MEd LINE L1 1045 1234 -4885 467 321 40 18 chr3 83511926 83512150 -134525008 + L1MEd LINE L1 1285 1513 -4797 240 232 18 0 chr3 83512416 83512472 -134524686 + (TGAA)n Simple_repeat Simple_repeat 3 59 0 237 139 0 0 chr3 83512472 83512515 -134524643 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 306 0 0 0 chr3 83512888 83512922 -134524236 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 218 378 44 0 chr3 83514548 83514683 -134522475 + L2 LINE L2 2344 2484 -830 417 304 185 10 chr3 83514898 83515201 -134521957 + MLT1G LTR MaLR 15 370 -220 250 235 44 0 chr3 83515252 83515320 -134521838 + MLT1G LTR MaLR 459 529 -26 287 262 83 0 chr3 83515702 83515786 -134521372 + L2 LINE L2 2564 2654 -660 3295 187 63 45 chr3 83515829 83517076 -134520082 + L1MB7 LINE L1 4909 6167 -17 183 80 0 0 chr3 83518191 83518216 -134518942 + (A)n Simple_repeat Simple_repeat 1 25 0 558 292 64 27 chr3 83518628 83518926 -134518232 + MER102b DNA MER1_type 17 325 -16 22 0 0 0 chr3 83519368 83519390 -134517768 + AT_rich Low_complexity Low_complexity 1 22 0 343 281 16 25 chr3 83519662 83519783 -134517375 + MIR SINE MIR 34 153 -109 828 237 58 0 chr3 83520394 83520601 -134516557 - MER58A DNA MER1_type 0 224 6 191 125 25 0 chr3 83521229 83521269 -134515889 + (TG)n Simple_repeat Simple_repeat 2 42 0 238 314 22 22 chr3 83521405 83521542 -134515616 + L1MEd LINE L1 2 138 -5981 5676 67 47 3 chr3 83521566 83522313 -134514845 - LTR17 LTR ERV1 0 780 1 503 285 35 43 chr3 83522515 83522891 -134514267 + L1MEd LINE L1 660 1032 -5087 2483 158 42 2 chr3 83522892 83523302 -134513856 + MSTB LTR MaLR 1 426 0 4548 184 41 1 chr3 83523303 83524198 -134512960 + MSTB-int LTR MaLR 2 932 -719 1071 119 36 10 chr3 83524299 83524493 -134512665 + MSTB-int LTR MaLR 1447 1645 -6 2398 173 27 0 chr3 83524501 83524912 -134512246 + MSTB LTR MaLR 5 426 0 430 317 113 24 chr3 83525024 83525356 -134511802 + L1MEd LINE L1 1199 1613 -877 396 246 162 43 chr3 83525366 83525785 -134511373 - L1M4 LINE L1 -2540 3606 3138 3009 107 91 120 chr3 83525818 83526486 -134510672 - pTR5 LTR ERV1 0 2438 114 216 186 47 0 chr3 83526807 83526850 -134510308 + (CATATA)n Simple_repeat Simple_repeat 2 46 0 1470 166 39 91 chr3 83526962 83527347 -134509811 + MLT1A1 LTR MaLR 1 365 0 23 78 0 0 chr3 83527608 83527659 -134509499 + AT_rich Low_complexity Low_complexity 1 51 0 520 247 60 60 chr3 83527781 83527927 -134509231 - MIR SINE MIR -2 260 112 1986 140 90 58 chr3 83527927 83528340 -134508818 + MSTB LTR MaLR 1 426 0 520 247 60 60 chr3 83528340 83528375 -134508783 - MIR SINE MIR -149 113 79 189 0 0 0 chr3 83528583 83528604 -134508554 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 249 256 0 37 chr3 83529181 83529263 -134507895 + CT-rich Low_complexity Low_complexity 4 82 0 658 290 148 38 chr3 83530265 83530658 -134506500 - MLT1J LTR MaLR -3 508 73 244 220 0 0 chr3 83530946 83530996 -134506162 + (TAG)n Simple_repeat Simple_repeat 2 51 0 353 299 28 79 chr3 83531248 83531425 -134505733 + MIR SINE MIR 49 216 -46 1336 200 70 33 chr3 83532068 83532368 -134504790 + AluJo SINE Alu 2 312 0 910 103 40 11 chr3 83532390 83532564 -134504594 + GA-rich Low_complexity Low_complexity 1 179 0 1270 143 121 30 chr3 83533210 83533475 -134503683 - AluSx SINE Alu -2 310 22 180 0 0 0 chr3 83533480 83533500 -134503658 + (T)n Simple_repeat Simple_repeat 1 20 0 2218 208 60 20 chr3 83535293 83536094 -134501064 + L1PB4 LINE L1 5145 5986 -170 * 3610 158 33 32 chr3 83535668 83536397 -134500761 + L1MA8 LINE L1 5562 6291 0 191 190 17 0 chr3 83537191 83537249 -134499909 + (TA)n Simple_repeat Simple_repeat 2 60 0 5611 158 38 6 chr3 83538032 83538173 -134498985 - L1MA9 LINE L1 -4 6308 6173 306 0 0 0 chr3 83538173 83538207 -134498951 + (TG)n Simple_repeat Simple_repeat 1 34 0 5611 158 38 6 chr3 83538207 83539087 -134498071 - L1MA9 LINE L1 -139 6173 5254 2715 156 29 48 chr3 83539092 83539617 -134497541 - MLT2B2 LTR ERVL 0 515 1 13932 147 26 28 chr3 83539617 83540427 -134496731 - ERVL-B2 LTR ERVL -7 5757 4948 1386 172 38 69 chr3 83540427 83540747 -134496411 - AluJo SINE Alu -2 310 1 13932 147 26 28 chr3 83540747 83542296 -134494862 - ERVL-B2 LTR ERVL -816 4948 3401 621 160 83 14 chr3 83542311 83542455 -134494703 - L1MA9 LINE L1 -894 5252 5099 289 281 22 11 chr3 83542662 83542751 -134494407 + MIR SINE MIR 96 185 -77 392 335 36 27 chr3 83542889 83543113 -134494045 - MLT1L LTR MaLR -347 268 43 494 268 81 49 chr3 83543979 83544263 -134492895 - MLT1J1 LTR MaLR -1 445 153 39 22 0 0 chr3 83544368 83544414 -134492744 + AT_rich Low_complexity Low_complexity 1 46 0 334 327 12 43 chr3 83544471 83544633 -134492525 - MIR SINE MIR 0 262 106 2179 124 0 0 chr3 83544641 83544939 -134492219 + AluSx SINE Alu 1 298 -14 207 0 0 0 chr3 83545672 83545695 -134491463 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2329 82 0 0 chr3 83545698 83545980 -134491178 - AluSc SINE Alu -24 285 4 186 43 0 0 chr3 83546104 83546127 -134491031 + (TTTC)n Simple_repeat Simple_repeat 1 23 0 3896 70 23 0 chr3 83546127 83546640 -134490518 - L1PA7 LINE L1 0 6154 5630 294 269 62 76 chr3 83546682 83546827 -134490331 - L3 LINE CR1 -10 1567 1425 303 260 238 26 chr3 83547108 83547339 -134489819 - LTR33 LTR ERVL -234 287 8 555 90 0 0 chr3 83547708 83547727 -134489431 + (CA)n Simple_repeat Simple_repeat 1 97 0 555 90 0 0 chr3 83547727 83547805 -134489353 + (CA)n Simple_repeat Simple_repeat 1 78 0 1143 173 33 9 chr3 83550677 83550891 -134486267 + MER20 DNA MER1_type 1 219 0 25 31 0 0 chr3 83550896 83550928 -134486230 + AT_rich Low_complexity Low_complexity 1 32 0 525 287 137 63 chr3 83550980 83551346 -134485812 - L2 LINE L2 0 3313 2921 6310 111 27 2 chr3 83551637 83552608 -134484550 + L1MA3 LINE L1 5311 6305 0 2184 110 53 37 chr3 83553088 83553443 -134483715 - THE1B LTR MaLR 0 364 4 26 0 0 0 chr3 83554938 83554964 -134482194 + AT_rich Low_complexity Low_complexity 1 26 0 180 224 41 20 chr3 83555631 83555680 -134481478 - MER5A DNA MER1_type -83 106 57 407 196 28 105 chr3 83555739 83555882 -134481276 - MIR SINE MIR -111 151 20 763 192 20 0 chr3 83555953 83556099 -134481059 + MER5A DNA MER1_type 41 189 0 281 353 66 8 chr3 83556682 83556804 -134480354 - L2 LINE L2 0 3313 3185 960 253 29 27 chr3 83557052 83557344 -134479814 + LTR16C LTR ERVL 159 489 -2 270 323 120 24 chr3 83560975 83561142 -134476016 - L2 LINE L2 -830 2484 2302 15239 43 2 0 chr3 83561303 83563956 -134473202 + L1PA5 LINE L1 3484 6146 -8 1496 132 51 7 chr3 83563970 83564265 -134472893 + L1MA9 LINE L1 6003 6310 -2 1117 226 70 21 chr3 83564304 83564632 -134472526 - MER2 DNA MER2_type 0 344 1 255 256 31 54 chr3 83564695 83564824 -134472334 + L2 LINE L2 3119 3244 -69 2001 228 61 15 chr3 83564837 83565381 -134471777 - L1MC4a LINE L1 0 7808 7240 291 282 35 35 chr3 83565387 83565472 -134471686 + L2 LINE L2 3188 3272 0 188 313 0 30 chr3 83567721 83567788 -134469370 - MIR3 SINE MIR -6 202 138 246 310 47 70 chr3 83567996 83568043 -134469115 - MIR SINE MIR -63 145 98 2042 163 40 0 chr3 83568043 83568418 -134468740 + MLT1B LTR MaLR 1 390 0 246 310 47 70 chr3 83568418 83568499 -134468659 - MIR SINE MIR -110 98 20 549 330 10 20 chr3 83568922 83569122 -134468036 + MIR SINE MIR 7 204 -58 288 0 0 0 chr3 83569128 83569160 -134467998 + (TG)n Simple_repeat Simple_repeat 1 32 0 1750 210 44 13 chr3 83569214 83569942 -134467216 + L1ME1 LINE L1 4974 5719 -447 546 302 17 6 chr3 83569947 83570126 -134467032 + L1ME1 LINE L1 5981 6161 -5 605 258 172 29 chr3 83570316 83570525 -134466633 + MIR SINE MIR 23 261 -1 2107 159 51 32 chr3 83570656 83571189 -134465969 - MLT2A2 LTR ERVL 0 554 1 1466 190 17 7 chr3 83571189 83571479 -134465679 - MLT1B LTR MaLR -16 374 82 1359 220 36 0 chr3 83571479 83571756 -134465402 + AluJo SINE Alu 1 287 -25 305 259 47 12 chr3 83571781 83571866 -134465292 - MLT1B LTR MaLR -294 96 9 454 190 25 0 chr3 83571868 83571947 -134465211 + MER81 DNA DNA 30 110 -4 1142 120 0 13 chr3 83573923 83574081 -134463077 + AluSg/x SINE Alu 140 295 -17 1973 134 0 23 chr3 83574909 83575214 -134461944 - AluSx SINE Alu -14 298 1 450 228 55 41 chr3 83575761 83575906 -134461252 + L1ME3A LINE L1 5944 6090 -80 780 267 70 28 chr3 83575941 83576232 -134460926 + L1ME LINE L1 5477 5778 -343 624 153 34 17 chr3 83576232 83576350 -134460808 + FLAM_A SINE Alu 1 120 -13 780 267 70 28 chr3 83576350 83576380 -134460778 + L1ME LINE L1 5778 5805 -316 28 48 0 0 chr3 83576629 83576671 -134460487 + AT_rich Low_complexity Low_complexity 1 42 0 1808 130 0 4 chr3 83576749 83577010 -134460148 - AluSx SINE Alu -14 298 39 273 245 132 47 chr3 83577387 83577493 -134459665 - MIR SINE MIR -77 131 30 364 296 42 7 chr3 83577877 83578019 -134459139 + MER117 DNA MER1_type 7 153 -44 399 265 135 39 chr3 83579520 83579750 -134457408 + MIR SINE MIR 8 259 -3 521 281 39 20 chr3 83579811 83580009 -134457149 + MIR SINE MIR 57 260 -2 332 298 56 34 chr3 83581424 83581602 -134455556 - Charlie8 DNA MER1_type -2142 275 94 284 278 31 10 chr3 83581929 83582026 -134455132 - L2 LINE L2 0 3272 3174 534 277 37 45 chr3 83582312 83582438 -134454720 - MIR SINE MIR -6 256 131 1661 176 163 3 chr3 83582438 83582807 -134454351 - MSTA LTR MaLR 0 428 1 534 277 37 45 chr3 83582807 83582922 -134454236 - MIR SINE MIR -131 131 17 2039 85 0 4 chr3 83583176 83583448 -134453710 + AluY SINE Alu 37 307 -4 617 221 16 0 chr3 83584165 83584292 -134452866 + FLAM_C SINE Alu 1 129 -14 211 204 0 0 chr3 83584402 83584446 -134452712 + GA-rich Low_complexity Low_complexity 3 46 0 26 50 0 0 chr3 83585440 83585480 -134451678 + AT_rich Low_complexity Low_complexity 1 40 0 2442 88 0 0 chr3 83586094 83586402 -134450756 + AluY SINE Alu 1 308 -3 297 299 234 0 chr3 83586556 83586710 -134450448 + MIR SINE MIR 12 201 -61 800 275 171 42 chr3 83586761 83587259 -134449899 - MLT1K LTR MaLR -2 586 25 225 278 112 66 chr3 83589073 83589112 -134448046 - L2 LINE L2 -126 3187 3151 839 116 8 0 chr3 83589112 83589241 -134447917 + FLAM_C SINE Alu 4 133 0 225 278 112 66 chr3 83589241 83589442 -134447716 - L2 LINE L2 -162 3151 2936 2949 253 177 47 chr3 83589461 83591320 -134445838 - L2 LINE L2 0 3313 1227 323 295 136 29 chr3 83592062 83592438 -134444720 + L1ME4a LINE L1 5695 6110 -11 721 250 54 38 chr3 83592822 83593062 -134444096 - MIR SINE MIR -11 251 8 203 265 15 68 chr3 83593054 83593186 -134443972 - L2 LINE L2 -34 3279 3155 * 260 349 0 0 chr3 83593223 83593289 -134443869 + (CGTG)n Simple_repeat Simple_repeat 4 69 0 195 129 0 0 chr3 83596518 83596549 -134440609 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 269 355 121 7 chr3 83596873 83597014 -134440144 + MIR SINE MIR 5 161 -101 1027 157 89 16 chr3 83597281 83597529 -134439629 - L1MA9 LINE L1 0 6312 6047 251 344 89 0 chr3 83598129 83598309 -134438849 - L1MC/D LINE L1 -1987 5821 5626 391 292 65 30 chr3 83598393 83598676 -134438482 - L1MC/D LINE L1 -559 5603 5313 5875 117 10 0 chr3 83598686 83599924 -134437234 - L1PA15 LINE L1 -9 6156 4918 384 308 47 0 chr3 83600382 83600596 -134436562 - L1MC/D LINE L1 -1453 4693 4470 916 275 55 60 chr3 83600627 83601064 -134436094 - MLT1J LTR MaLR -49 462 28 2119 135 39 34 chr3 83601288 83601674 -134435484 + MLT1B LTR MaLR 3 390 0 420 346 191 8 chr3 83601677 83602194 -134434964 - L1MC/D LINE L1 -1926 4220 3609 1046 191 51 16 chr3 83602378 83602635 -134434523 - L1MA9 LINE L1 0 6312 6047 301 240 166 37 chr3 83602686 83602903 -134434255 - L1MC/D LINE L1 -3101 3045 2801 421 220 121 0 chr3 83602962 83603094 -134434064 + L1MC4a LINE L1 7660 7807 -1 414 278 150 5 chr3 83603203 83603390 -134433768 + MIR SINE MIR 2 215 -47 21 0 0 0 chr3 83603951 83603972 -134433186 + AT_rich Low_complexity Low_complexity 1 21 0 180 240 20 0 chr3 83604310 83604360 -134432798 - MIR SINE MIR -11 251 201 338 271 0 52 chr3 83604681 83604777 -134432381 - L2 LINE L2 -24 3289 3199 577 202 173 0 chr3 83604836 83605009 -134432149 - MER3 DNA MER1_type -6 203 1 5359 127 8 1 chr3 83606656 83607480 -134429678 + L1PA15 LINE L1 5334 6163 -2 1718 169 10 7 chr3 83608322 83608612 -134428546 + AluJo SINE Alu 3 293 -19 1447 214 46 3 chr3 83608637 83608960 -134428198 - MER58B DNA MER1_type 0 341 5 405 268 137 35 chr3 83609163 83609555 -134427603 + MLT1J2 LTR MaLR 1 449 -1 247 247 123 0 chr3 83609557 83609630 -134427528 + L2 LINE L2 3225 3306 -7 247 154 115 0 chr3 83609831 83609883 -134427275 - L2 LINE L2 -14 3258 3201 334 87 0 0 chr3 83610088 83610134 -134427024 - MER6 DNA MER2_type -3 862 817 * 2180 191 30 36 chr3 83610130 83610322 -134426836 - MER6 DNA MER2_type -429 436 244 258 32 0 0 chr3 83610322 83610353 -134426805 + (CA)n Simple_repeat Simple_repeat 1 31 0 2180 191 30 36 chr3 83610353 83610599 -134426559 - MER6 DNA MER2_type -621 244 1 235 302 81 70 chr3 83610605 83610863 -134426295 - L2 LINE L2 -78 3194 2934 1786 306 155 25 chr3 83611168 83612603 -134424555 - L2 LINE L2 -217 3096 1458 231 77 26 26 chr3 83612661 83612700 -134424458 + L1PA3 LINE L1 5434 5472 -682 270 0 0 0 chr3 83613189 83613219 -134423939 + (CA)n Simple_repeat Simple_repeat 1 30 0 3733 31 9 0 chr3 83613474 83613919 -134423239 + L1PA3 LINE L1 5706 6154 -1 261 303 58 103 chr3 83614067 83614447 -134422711 - L3 LINE CR1 -541 1036 674 2342 126 80 5 chr3 83614884 83615282 -134421876 + MSTA LTR MaLR 1 428 0 434 315 52 80 chr3 83615596 83615945 -134421213 - MLT1I LTR MaLR 0 409 71 2333 174 14 7 chr3 83615992 83616429 -134420729 - L1MD1 LINE L1 -252 6785 6346 428 162 101 0 chr3 83616456 83616555 -134420603 - L1MA4 LINE L1 -3 6297 6189 * 1794 196 28 17 chr3 83616553 83617242 -134419916 - L1MD1 LINE L1 -696 6341 5644 2997 267 34 25 chr3 83617246 83618345 -134418813 - L1MD1 LINE L1 -2001 4940 3832 274 165 101 38 chr3 83618395 83618474 -134418684 - L1MD1 LINE L1 -3084 3857 3774 2192 186 173 23 chr3 83618475 83619495 -134417663 - L1MD1 LINE L1 -3363 3578 2399 408 20 0 0 chr3 83619495 83619544 -134417614 + (TG)n Simple_repeat Simple_repeat 2 50 0 2192 186 173 23 chr3 83619544 83619623 -134417535 - L1MD1 LINE L1 -4542 2399 2333 1657 200 44 46 chr3 83619621 83619818 -134417340 - L1MD1 LINE L1 -5038 1903 1707 * 1728 169 3 14 chr3 83619818 83620114 -134417044 + AluJb SINE Alu 1 293 -19 1657 200 44 46 chr3 83620114 83620436 -134416722 - L1MD1 LINE L1 -5234 1707 1385 1995 148 42 22 chr3 83621223 83621580 -134415578 + THE1B LTR MaLR 1 364 0 721 209 6 12 chr3 83621632 83621804 -134415354 - L1MD1 LINE L1 -6181 242 72 * 38087 46 3 4 chr3 83621798 83627338 -134409820 - L1PA5 LINE L1 0 6154 623 696 100 0 0 chr3 83627334 83627424 -134409734 - L1PA5 LINE L1 -6046 100 11 * 2276 254 48 23 chr3 83627433 83628068 -134409090 - L1MDa LINE L1 -5541 999 122 317 275 92 75 chr3 83628566 83628871 -134408287 + L2 LINE L2 2187 2496 -818 4056 208 25 1 chr3 83628875 83629764 -134407394 + MER63C DNA MER1_type 12 921 -9 304 401 53 24 chr3 83629771 83629978 -134407180 + L2 LINE L2 2493 2705 -609 716 299 48 44 chr3 83630013 83630578 -134406580 - L2 LINE L2 0 3313 2684 318 344 18 18 chr3 83630563 83630726 -134406432 + L2 LINE L2 2718 2880 -434 * 445 296 59 13 chr3 83630853 83631005 -134406153 + L2 LINE L2 3155 3313 0 237 368 0 11 chr3 83631005 83631092 -134406066 + L2 LINE L2 3187 3272 0 226 155 52 0 chr3 83631097 83631155 -134406003 + (TGAA)n Simple_repeat Simple_repeat 3 63 0 182 256 0 11 chr3 83631243 83631333 -134405825 + (TGAA)n Simple_repeat Simple_repeat 1 89 0 324 0 0 0 chr3 83632022 83632058 -134405100 + (TG)n Simple_repeat Simple_repeat 2 37 0 186 413 0 0 chr3 83634431 83634523 -134402635 + L2 LINE L2 2259 2350 -964 1298 282 62 3 chr3 83634532 83634904 -134402254 - LTR16C LTR ERVL -16 475 82 1174 252 12 38 chr3 83634922 83635263 -134401895 + MLT1A1 LTR MaLR 34 365 0 990 317 57 41 chr3 83635372 83635447 -134401711 + L2 LINE L2 2396 2468 -845 2352 120 20 8 chr3 83635447 83635805 -134401353 - THE1B LTR MaLR 0 364 3 990 317 57 41 chr3 83635805 83636619 -134400539 + L2 LINE L2 2468 3306 -7 1927 157 0 0 chr3 83636619 83636920 -134400238 + AluSx SINE Alu 1 301 0 595 281 36 84 chr3 83637038 83637373 -134399785 + L2 LINE L2 2994 3312 -1 41124 65 4 1 chr3 83637796 83643926 -134393232 - L1PA5 LINE L1 0 6154 4 878 169 175 0 chr3 83644385 83644562 -134392596 + AluJb SINE Alu 87 294 -18 497 287 52 31 chr3 83644563 83644849 -134392309 + L1ME4a LINE L1 5652 5943 -178 719 311 50 76 chr3 83645474 83645973 -134391185 - MLT1K LTR MaLR -2 586 101 232 281 0 0 chr3 83647679 83647736 -134389422 - L2 LINE L2 -8 3264 3208 196 316 92 0 chr3 83647740 83647816 -134389342 - L2 LINE L2 -498 2816 2734 322 313 30 15 chr3 83648354 83648488 -134388670 - L1ME LINE L1 -626 5536 5401 748 291 158 16 chr3 83648919 83649304 -134387854 + L2 LINE L2 2862 3301 -12 1826 172 84 21 chr3 83649543 83649926 -134387232 - MSTA LTR MaLR -21 407 1 1786 166 91 29 chr3 83650013 83650429 -134386729 + L1MB7 LINE L1 5735 6176 -8 912 223 0 49 chr3 83650510 83650734 -134386424 + MER58A DNA MER1_type 12 224 0 639 267 24 19 chr3 83650928 83651134 -134386024 - HsTC2 DNA Tc2 -7 1891 1685 306 253 0 0 chr3 83651446 83651521 -134385637 - HsTC2 DNA Tc2 -1823 75 1 1012 162 50 6 chr3 83651851 83652030 -134385128 + MER5A DNA MER1_type 2 188 -1 1869 115 6 86 chr3 83652855 83653169 -134383989 + AluSx SINE Alu 1 289 -23 201 208 19 19 chr3 83653524 83653577 -134383581 + GA-rich Low_complexity Low_complexity 1 53 0 581 257 146 13 chr3 83653930 83654151 -134383007 + MIR SINE MIR 10 261 -1 1070 145 21 94 chr3 83656020 83656139 -134381019 + MER20 DNA MER1_type 1 96 -123 2256 108 13 0 chr3 83656139 83656444 -134380714 + AluSg SINE Alu 1 309 -1 1070 145 21 94 chr3 83656444 83656559 -134380599 + MER20 DNA MER1_type 96 218 -1 208 320 41 0 chr3 83657520 83657617 -134379541 + MIR SINE MIR 17 117 -91 28 0 0 0 chr3 83658112 83658140 -134379018 + AT_rich Low_complexity Low_complexity 1 28 0 208 302 151 0 chr3 83658331 83658437 -134378721 + L2 LINE L2 2916 3037 -235 832 219 26 30 chr3 83658522 83658755 -134378403 - L1MB8 LINE L1 -2 6176 5945 425 229 179 21 chr3 83658955 83659095 -134378063 - MIR SINE MIR -70 192 31 380 192 6 169 chr3 83659992 83660164 -134376994 - L1ME4a LINE L1 -28 6093 5950 202 231 39 13 chr3 83660180 83660258 -134376900 + (TA)n Simple_repeat Simple_repeat 2 81 0 680 285 157 0 chr3 83660426 83660693 -134376465 - MER102b DNA MER1_type -6 335 27 217 324 81 0 chr3 83661123 83661197 -134375961 - L2 LINE L2 0 3313 3234 189 107 0 0 chr3 83661207 83661235 -134375923 + (TG)n Simple_repeat Simple_repeat 1 28 0 292 345 43 0 chr3 83661875 83661991 -134375167 - MIR3 SINE MIR -6 202 82 186 354 12 12 chr3 83663497 83663579 -134373579 - MIR3 SINE MIR -41 167 86 234 0 0 0 chr3 83665370 83665396 -134371762 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2348 102 3 0 chr3 83667109 83667413 -134369745 + AluSp SINE Alu 1 305 -8 878 251 106 4 chr3 83671792 83672019 -134365139 + MIR SINE MIR 13 262 0 22 0 0 0 chr3 83672181 83672203 -134364955 + AT_rich Low_complexity Low_complexity 1 22 0 353 75 0 0 chr3 83672227 83672280 -134364878 + L1MA1 LINE L1 6220 6272 -30 4281 75 39 31 chr3 83672280 83672922 -134364236 - L1MA1 LINE L1 -51 6251 5605 2924 160 4 6 chr3 83672913 83673721 -134363437 + L1MA1 LINE L1 4796 5602 -702 * 861 233 48 5 chr3 83674486 83674696 -134362462 - MER58A DNA MER1_type -1 223 5 264 30 0 0 chr3 83674701 83674734 -134362424 + (TA)n Simple_repeat Simple_repeat 2 34 0 4059 53 50 0 chr3 83674753 83675338 -134361820 + L1P LINE L1 4002 4615 -1531 239 164 82 27 chr3 83675708 83675781 -134361377 - L1P4 LINE L1 -331 5837 5761 319 306 82 29 chr3 83675950 83676156 -134361002 - L1ME LINE L1 -577 5544 5328 357 281 158 7 chr3 83676499 83676638 -134360520 - MIR SINE MIR -18 244 85 303 381 40 0 chr3 83676973 83677099 -134360059 + MIR SINE MIR 19 149 -113 270 0 0 0 chr3 83680256 83680286 -134356872 + (TG)n Simple_repeat Simple_repeat 1 30 0 815 294 4 29 chr3 83682117 83682362 -134354796 - MIR SINE MIR -5 257 19 325 216 246 22 chr3 83682365 83682499 -134354659 - MER5A DNA MER1_type 0 189 26 662 216 111 6 chr3 83682532 83682703 -134354455 - MER5A DNA MER1_type 0 189 1 288 301 11 0 chr3 83684033 83684126 -134353032 - L1ME LINE L1 -332 5838 5745 493 224 0 0 chr3 83684207 83684290 -134352868 - Tigger7 DNA MER2_type 0 2487 2405 278 222 0 0 chr3 83684290 83684344 -134352814 - MER8 DNA MER2_type 0 239 186 1830 158 129 21 chr3 83684344 83684730 -134352428 + MSTA LTR MaLR 1 428 0 8836 146 21 33 chr3 83684732 83686327 -134350831 + MSTA-int LTR MaLR 3 1578 -2 1165 90 0 24 chr3 83686327 83686493 -134350665 + AluY SINE Alu 13 174 -137 3176 119 93 44 chr3 83686620 83687318 -134349840 - pTR5 LTR ERV1 -964 1474 743 2137 105 0 0 chr3 83687379 83687664 -134349494 - AluSx SINE Alu -19 293 9 482 262 103 0 chr3 83687699 83687825 -134349333 + MER5A DNA MER1_type 1 139 -50 26 0 0 0 chr3 83689427 83689453 -134347705 + AT_rich Low_complexity Low_complexity 1 26 0 262 271 0 0 chr3 83690749 83690808 -134346350 + MIR SINE MIR 91 149 -113 729 200 7 15 chr3 83691171 83691306 -134345852 - MLT1A1 LTR MaLR -52 313 180 340 348 123 7 chr3 83691345 83691483 -134345675 - L2 LINE L2 -4 3268 3115 29 28 0 0 chr3 83693746 83693782 -134343376 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr3 83694031 83694069 -134343089 + AT_rich Low_complexity Low_complexity 1 38 0 288 0 0 0 chr3 83694557 83694589 -134342569 + (TG)n Simple_repeat Simple_repeat 1 32 0 1366 180 106 0 chr3 83694602 83694857 -134342301 - AluJb SINE Alu -30 282 1 284 308 14 70 chr3 83695958 83696101 -134341057 + MLT1K LTR MaLR 273 407 -181 743 0 0 11 chr3 83696306 83696394 -134340764 + (TTTC)n Simple_repeat Simple_repeat 1 87 0 320 279 70 20 chr3 83696458 83696659 -134340499 - HAL1 LINE L1 -19 2488 2278 544 269 23 46 chr3 83696660 83696876 -134340282 - HAL1 LINE L1 -989 1518 1308 1200 276 61 47 chr3 83697076 83697128 -134340030 - HAL1 LINE L1 -1484 1023 973 333 0 0 0 chr3 83697128 83697165 -134339993 + (TA)n Simple_repeat Simple_repeat 1 37 0 1200 276 61 47 chr3 83697165 83697619 -134339539 - HAL1 LINE L1 -1534 973 510 269 255 41 20 chr3 83697962 83698060 -134339098 + LTR67 LTR ERVL 458 557 0 429 250 21 49 chr3 83698910 83699054 -134338104 + MIR SINE MIR 65 204 -58 459 265 149 47 chr3 83699185 83699634 -134337524 + L1ME4a LINE L1 5379 5873 -248 348 228 0 22 chr3 83699723 83699815 -134337343 + L1MC4 LINE L1 6614 6703 -1339 251 204 0 0 chr3 83699797 83699851 -134337307 - L1MC4 LINE L1 -1337 6705 6652 * 227 321 48 0 chr3 83699833 83699917 -134337241 + L1MC4 LINE L1 6614 6701 -1341 * 311 228 167 0 chr3 83700033 83700147 -134337011 + L1ME4a LINE L1 5984 6116 -5 360 314 88 35 chr3 83701678 83701904 -134335254 - MER102a DNA MER1_type -1 329 92 22 35 0 0 chr3 83701962 83701991 -134335167 + AT_rich Low_complexity Low_complexity 1 29 0 296 209 0 0 chr3 83702279 83702346 -134334812 + HsTC2 DNA Tc2 1831 1897 -1 25 0 0 0 chr3 83702457 83702482 -134334676 + AT_rich Low_complexity Low_complexity 1 25 0 259 246 14 43 chr3 83703795 83703864 -134333294 + L2 LINE L2 3247 3313 0 189 0 0 0 chr3 83704014 83704035 -134333123 + (CA)n Simple_repeat Simple_repeat 2 22 0 185 308 26 13 chr3 83704492 83704570 -134332588 + MIR SINE MIR 158 236 -26 1931 128 50 0 chr3 83704811 83705093 -134332065 - AluSx SINE Alu -15 297 2 275 200 0 0 chr3 83705342 83705397 -134331761 - L1MB8 LINE L1 -1 6177 6123 311 191 29 0 chr3 83705450 83705518 -134331640 - L2 LINE L2 0 3313 3244 918 246 19 0 chr3 83705536 83705751 -134331407 - MER20 DNA MER1_type 0 219 1 297 236 34 22 chr3 83707058 83707147 -134330011 - MIR SINE MIR 0 262 173 2337 265 52 24 chr3 83707152 83707918 -134329240 + L1ME3A LINE L1 5375 6162 -8 383 231 142 30 chr3 83707936 83708070 -134329088 - MIR SINE MIR -96 166 18 191 240 144 96 chr3 83708714 83708839 -134328319 + MER5A DNA MER1_type 59 189 0 347 325 37 27 chr3 83710742 83711238 -134325920 + L1MCc LINE L1 1208 1892 -4955 407 341 10 13 chr3 83711890 83712036 -134325122 - MIR SINE MIR -59 149 7 924 104 8 0 chr3 83712127 83712252 -134324906 - AluSx SINE Alu -13 299 174 723 126 0 0 chr3 83712252 83712355 -134324803 - AluSx SINE Alu -210 103 1 1117 253 130 28 chr3 83712916 83713434 -134323724 - L1MC4a LINE L1 -689 5477 5371 475 346 49 28 chr3 83713445 83713835 -134323323 - L1MC4a LINE L1 -813 5333 4936 222 37 0 0 chr3 83713921 83713948 -134323210 + (T)n Simple_repeat Simple_repeat 1 27 0 183 302 0 19 chr3 83713953 83714006 -134323152 + L2 LINE L2 3216 3267 -5 24 0 0 0 chr3 83715785 83715809 -134321349 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr3 83716373 83716395 -134320763 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr3 83716974 83716997 -134320161 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 564 230 84 37 chr3 83717321 83717512 -134319646 + MIR SINE MIR 63 262 0 1753 223 56 22 chr3 83717634 83717975 -134319183 - L1MC4a LINE L1 -3 7805 7444 2364 195 61 2 chr3 83717975 83718452 -134318706 - MLT1D LTR MaLR 0 505 1 1753 223 56 22 chr3 83718452 83718558 -134318600 - L1MC4a LINE L1 -364 7444 7343 1023 232 47 59 chr3 83718594 83718934 -134318224 + MER46C DNA MER2_type 2 337 -1 24 77 0 0 chr3 83719212 83719264 -134317894 + AT_rich Low_complexity Low_complexity 1 52 0 32 26 0 0 chr3 83719318 83719357 -134317801 + AT_rich Low_complexity Low_complexity 1 39 0 1575 181 41 10 chr3 83719541 83719833 -134317325 + AluJb SINE Alu 2 302 -10 297 214 270 16 chr3 83719879 83720005 -134317153 - L1MC4a LINE L1 -1053 6755 6598 219 203 14 14 chr3 83720018 83720087 -134317071 + (TATAA)n Simple_repeat Simple_repeat 5 73 0 32 43 0 0 chr3 83720120 83720166 -134316992 + AT_rich Low_complexity Low_complexity 1 46 0 524 315 37 46 chr3 83720850 83721091 -134316067 - MIR SINE MIR -22 240 2 21 0 0 0 chr3 83722857 83722878 -134314280 + AT_rich Low_complexity Low_complexity 1 21 0 3108 138 13 8 chr3 83726675 83727202 -134309956 + L1MB3 LINE L1 5597 6125 -58 221 56 0 28 chr3 83727202 83727238 -134309920 + (TTAA)n Simple_repeat Simple_repeat 2 36 0 933 174 7 0 chr3 83727238 83727393 -134309765 - AluSg/x SINE Alu -28 284 129 1128 276 57 30 chr3 83727619 83727986 -134309172 + LTR16C LTR ERVL 1 377 -114 2208 167 9 2 chr3 83727986 83728365 -134308793 + MLT2D LTR ERVL 1 480 -40 24 0 0 0 chr3 83728365 83728389 -134308769 + AT_rich Low_complexity Low_complexity 1 24 0 212 143 24 0 chr3 83728394 83728436 -134308722 + (TA)n Simple_repeat Simple_repeat 2 44 0 730 166 105 50 chr3 83728553 83728692 -134308466 + MER20 DNA MER1_type 29 182 -37 2051 119 47 36 chr3 83728692 83729052 -134308106 + THE1B LTR MaLR 1 364 0 730 166 105 50 chr3 83729052 83729093 -134308065 + MER20 DNA MER1_type 182 219 0 2247 95 3 0 chr3 83729152 83729459 -134307699 + AluSp SINE Alu 1 308 0 345 347 68 17 chr3 83730592 83730768 -134306390 + MIR3 SINE MIR 14 198 -10 556 330 37 18 chr3 83731148 83731475 -134305683 - LTR16C LTR ERVL 0 491 159 300 158 132 0 chr3 83732555 83732631 -134304527 - L1MA4 LINE L1 -14 6286 6201 633 185 104 0 chr3 83733082 83733217 -134303941 + MER21B LTR ERV1 348 496 -367 430 385 76 42 chr3 83733217 83733796 -134303362 + L1PBb LINE L1 18 616 -6233 348 343 37 23 chr3 83733909 83734209 -134302949 + L1PBb LINE L1 702 1005 -5844 355 267 0 30 chr3 83734546 83734647 -134302511 + L1PBb LINE L1 1471 1568 -5280 * 2133 213 78 17 chr3 83734627 83735451 -134301707 + L1PB4 LINE L1 1336 2255 -4594 5397 222 35 8 chr3 83735456 83736962 -134300196 + L1PB4 LINE L1 3329 4874 -1975 4023 155 5 44 chr3 83736961 83737761 -134299397 + L1PB4 LINE L1 6091 6859 0 * 23 33 0 0 chr3 83737801 83737831 -134299327 + AT_rich Low_complexity Low_complexity 1 30 0 239 287 81 0 chr3 83737974 83738061 -134299097 + MIR SINE MIR 70 163 -99 722 275 63 0 chr3 83738068 83738275 -134298883 + MER58A DNA MER1_type 1 220 -4 21 0 0 0 chr3 83738347 83738368 -134298790 + AT_rich Low_complexity Low_complexity 1 21 0 296 370 72 16 chr3 83738672 83738921 -134298237 - L3b LINE CR1 -4 1579 1317 252 362 45 6 chr3 83740810 83740987 -134296171 + L2 LINE L2 2383 2566 -748 505 284 43 0 chr3 83741155 83741317 -134295841 + MER46C DNA MER2_type 166 334 -4 184 206 0 0 chr3 83741624 83741658 -134295500 + L2 LINE L2 3279 3312 -1 180 0 0 0 chr3 83742492 83742512 -134294646 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2226 125 0 0 chr3 83743960 83744263 -134292895 + AluSx SINE Alu 1 303 -9 1664 160 115 45 chr3 83744296 83744696 -134292462 + MSTA LTR MaLR 1 428 0 * 15563 139 19 15 chr3 83744696 83747353 -134289805 + Tigger2 DNA MER2_type 50 2717 -1 1397 199 8 0 chr3 83747374 83747636 -134289522 - Tigger7 DNA MER2_type -2223 264 1 1440 168 35 16 chr3 83747671 83747987 -134289171 + MER33 DNA MER1_type 3 324 0 269 290 109 51 chr3 83747991 83748284 -134288874 - L1ME LINE L1 -544 5577 5268 22 35 0 0 chr3 83748331 83748360 -134288798 + AT_rich Low_complexity Low_complexity 1 29 0 419 230 11 0 chr3 83748433 83748520 -134288638 + L2 LINE L2 3221 3308 -5 250 206 116 97 chr3 83748765 83748920 -134288238 + MER103 DNA DNA 6 163 -3 27 29 0 0 chr3 83749189 83749223 -134287935 + AT_rich Low_complexity Low_complexity 1 34 0 2534 57 0 0 chr3 83749264 83749562 -134287596 - AluY SINE Alu -13 298 1 2242 121 27 21 chr3 83749653 83750026 -134287132 + THE1C LTR MaLR 1 375 0 1865 165 25 17 chr3 83750220 83750578 -134286580 + MLT1A1 LTR MaLR 3 363 -2 275 288 74 58 chr3 83750671 83751049 -134286109 + L1MC4a LINE L1 5547 5930 -1878 207 0 0 0 chr3 83752880 83752903 -134284255 + (T)n Simple_repeat Simple_repeat 1 23 0 236 184 20 0 chr3 83754559 83754608 -134282550 + (CA)n Simple_repeat Simple_repeat 2 51 0 706 236 200 22 chr3 83754750 83755025 -134282133 + MER5C DNA MER1_type 1 324 0 642 323 62 57 chr3 83755153 83755555 -134281603 + L2 LINE L2 2832 3235 -37 382 305 47 16 chr3 83755602 83755730 -134281428 + L2 LINE L2 3182 3313 0 357 24 0 0 chr3 83756420 83756462 -134280696 + (CA)n Simple_repeat Simple_repeat 2 43 0 24 32 0 0 chr3 83756810 83756841 -134280317 + AT_rich Low_complexity Low_complexity 1 31 0 258 333 142 12 chr3 83757492 83757654 -134279504 + MIR SINE MIR 80 262 0 643 272 158 22 chr3 83757735 83758191 -134278967 - MER113 DNA MER1_type? -3 518 1 1959 174 66 5 chr3 83758556 83758981 -134278177 - L1MB4 LINE L1 -1 6179 5729 281 253 13 0 chr3 83759311 83759386 -134277772 - MER117 DNA MER1_type -44 153 78 228 143 24 0 chr3 83760650 83760692 -134276466 + L1ME3A LINE L1 6118 6160 -10 643 117 54 0 chr3 83761190 83761301 -134275857 - MER3 DNA MER1_type 0 209 93 1893 72 8 8 chr3 83762009 83762258 -134274900 - AluY SINE Alu -8 303 55 358 336 0 9 chr3 83762739 83762846 -134274312 + MER5B DNA MER1_type 70 175 -3 524 228 0 18 chr3 83762881 83762995 -134274163 + MIR SINE MIR 45 156 -106 4640 188 78 27 chr3 83763007 83763977 -134273181 + LTR28 LTR ERV1 1 1020 0 5699 203 51 51 chr3 83763977 83765718 -134271440 + LTR28-int LTR ERV1 1 1653 -1435 13570 133 26 6 chr3 83765824 83768367 -134268791 + LTR28-int LTR ERV1 2854 4991 -2100 857 154 58 6 chr3 83768367 83768523 -134268635 - LTR28 LTR ERV1 -854 166 3 198 375 115 10 chr3 83769181 83769285 -134267873 + L2 LINE L2 3150 3264 -8 313 174 0 23 chr3 83770351 83770437 -134266721 + GA-rich Low_complexity Low_complexity 4 87 0 2193 110 0 10 chr3 83771390 83771689 -134265469 + AluSx SINE Alu 1 296 -16 499 245 77 21 chr3 83772169 83772312 -134264846 + MIR SINE MIR 21 171 -91 369 243 95 30 chr3 83772972 83773141 -134264017 + MIR SINE MIR 64 243 -19 186 143 0 0 chr3 83774067 83774102 -134263056 + (CA)n Simple_repeat Simple_repeat 1 35 0 23 33 0 0 chr3 83775285 83775315 -134261843 + AT_rich Low_complexity Low_complexity 1 30 0 31 44 0 0 chr3 83776266 83776311 -134260847 + AT_rich Low_complexity Low_complexity 1 45 0 26 0 0 0 chr3 83776342 83776368 -134260790 + AT_rich Low_complexity Low_complexity 1 26 0 498 219 116 32 chr3 83776644 83776799 -134260359 - MIR SINE MIR -15 247 80 187 338 28 0 chr3 83777003 83777074 -134260084 - L2 LINE L2 -5 3308 3236 194 297 110 25 chr3 83777184 83777302 -134259856 + MIR SINE MIR 19 146 -62 304 279 83 41 chr3 83777730 83778052 -134259106 - MLT1K LTR MaLR -8 580 166 2367 137 7 50 chr3 83778065 83778502 -134258656 + MSTB1 LTR MaLR 15 432 0 323 301 108 36 chr3 83779737 83780013 -134257145 - L2 LINE L2 -3 3310 3009 1311 234 88 49 chr3 83780414 83780825 -134256333 + MLT2B1 LTR ERVL 94 520 0 184 154 31 108 chr3 83780825 83780890 -134256268 - L2 LINE L2 -584 2730 2671 22 0 0 0 chr3 83783597 83783619 -134253539 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr3 83783756 83783790 -134253368 + AT_rich Low_complexity Low_complexity 1 34 0 388 208 40 10 chr3 83784149 83784250 -134252908 - MER103 DNA DNA -1 165 62 443 279 102 60 chr3 83784860 83785125 -134252033 + Charlie8 DNA MER1_type 1 276 -2141 192 158 0 0 chr3 83786664 83786702 -134250456 + CT-rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr3 83786923 83786948 -134250210 + AT_rich Low_complexity Low_complexity 1 25 0 413 291 66 20 chr3 83787565 83787716 -134249442 + MIR SINE MIR 39 196 -66 1025 224 75 22 chr3 83787810 83788078 -134249080 - Charlie8 DNA MER1_type -2135 282 1 22 35 0 0 chr3 83788435 83788464 -134248694 + AT_rich Low_complexity Low_complexity 1 29 0 1970 104 36 10 chr3 83788464 83788772 -134248386 - L1MA8 LINE L1 -4 6287 5972 207 69 0 0 chr3 83791226 83791255 -134245903 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 399 269 111 28 chr3 83791941 83792265 -134244893 + L1ME4a LINE L1 5697 6119 -2 201 259 12 62 chr3 83792453 83792534 -134244624 + L2 LINE L2 2588 2664 -650 209 329 130 48 chr3 83792543 83792874 -134244284 - L2 LINE L2 -1 3312 2955 222 118 0 0 chr3 83794300 83794334 -134242824 + (T)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr3 83794665 83794687 -134242471 + AT_rich Low_complexity Low_complexity 1 22 0 388 241 0 11 chr3 83795013 83795100 -134242058 + MIR SINE MIR 76 161 -101 264 341 97 35 chr3 83795140 83795366 -134241792 - L3 LINE CR1 -319 1258 1019 200 376 26 34 chr3 83795726 83795843 -134241315 + L3 LINE CR1 1230 1345 -232 21 36 0 0 chr3 83797828 83797856 -134239302 + AT_rich Low_complexity Low_complexity 1 28 0 391 311 30 15 chr3 83798086 83798221 -134238937 + MIR SINE MIR 17 153 -109 228 338 95 14 chr3 83798406 83798554 -134238604 + MIR SINE MIR 59 218 -44 22 0 0 0 chr3 83800036 83800058 -134237100 + AT_rich Low_complexity Low_complexity 1 22 0 222 377 77 46 chr3 83801469 83801729 -134235429 + L2 LINE L2 2996 3263 -9 331 284 64 0 chr3 83802196 83802305 -134234853 - MIR SINE MIR -1 261 146 5303 136 15 5 chr3 83802460 83803139 -134234019 - L1PA16 LINE L1 0 6166 5495 207 0 0 0 chr3 83803139 83803162 -134233996 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 5303 136 15 5 chr3 83803162 83804423 -134232735 - L1PA16 LINE L1 -671 5495 4213 490 363 39 6 chr3 83804734 83804973 -134232185 + MIR SINE MIR 12 257 -5 180 179 0 0 chr3 83805862 83805901 -134231257 + A-rich Low_complexity Low_complexity 5 43 0 891 232 16 0 chr3 83807192 83807377 -134229781 + MER5A DNA MER1_type 1 188 -1 378 283 92 30 chr3 83807379 83807554 -134229604 + MIR SINE MIR 2 189 -69 310 178 56 93 chr3 83807817 83807924 -134229234 - L1ME4a LINE L1 -51 6070 5968 279 0 0 0 chr3 83808933 83808964 -134228194 + (CA)n Simple_repeat Simple_repeat 2 32 0 372 261 25 37 chr3 83808966 83809127 -134228031 + L1MEc LINE L1 1779 1937 -4459 1562 258 119 40 chr3 83809142 83809696 -134227462 - MLT1E3 LTR MaLR -17 607 10 692 270 63 15 chr3 83809704 83810052 -134227106 + L1MEc LINE L1 1951 2274 -3941 289 272 99 12 chr3 83810096 83810258 -134226900 + L1MEc LINE L1 2265 2440 -3775 * 2391 117 0 0 chr3 83810257 83810616 -134226542 - L1P LINE L1 -962 5184 4826 6998 65 1 1 chr3 83810616 83811548 -134225610 + L1PA7 LINE L1 5223 6154 0 1634 114 4 0 chr3 83811563 83811808 -134225350 + L1PB1 LINE L1 5906 6151 0 250 246 0 0 chr3 83811835 83811900 -134225258 + L1MEc LINE L1 2437 2501 -3714 288 269 39 0 chr3 83811939 83812017 -134225141 + L2 LINE L2 2641 2721 -593 285 346 115 12 chr3 83812055 83812318 -134224840 + L1M4 LINE L1 3805 4108 -2038 2028 133 7 0 chr3 83812318 83812604 -134224554 - AluSx SINE Alu -24 288 1 285 346 115 12 chr3 83812604 83812661 -134224497 + L1M4 LINE L1 4108 4158 -1988 423 151 113 0 chr3 83812732 83812838 -134224320 - Charlie5 DNA MER1_type -27 2585 2468 1229 111 12 0 chr3 83812840 83813011 -134224147 + AluSc SINE Alu 3 175 -134 2555 77 0 0 chr3 83813011 83813351 -134223807 - L1P LINE L1 -2391 3755 3416 12174 42 37 1 chr3 83813351 83815582 -134221576 + L1PA5 LINE L1 3890 6154 0 261 0 0 0 chr3 83819012 83819041 -134218117 + (A)n Simple_repeat Simple_repeat 1 29 0 1897 168 0 13 chr3 83819157 83819467 -134217691 - AluJb SINE Alu -6 306 1 232 361 83 0 chr3 83819915 83820023 -134217135 + L2 LINE L2 3141 3257 -15 660 136 39 0 chr3 83820027 83820130 -134217028 + U6 snRNA snRNA 1 107 0 1729 191 21 18 chr3 83820133 83820520 -134216638 + L1MA4 LINE L1 5907 6294 -6 35 0 0 0 chr3 83820520 83820555 -134216603 + AT_rich Low_complexity Low_complexity 1 35 0 442 219 26 26 chr3 83821073 83821187 -134215971 - MLT1J2 LTR MaLR -286 164 51 183 236 0 55 chr3 83821755 83821810 -134215348 - L2 LINE L2 -2032 1282 1231 1011 217 64 19 chr3 83822322 83822636 -134214522 - HsTC2 DNA Tc2 0 1900 1573 261 184 0 20 chr3 83822675 83822724 -134214434 - HsTC2 DNA Tc2 -558 1340 1293 226 267 0 50 chr3 83822738 83822798 -134214360 - HsTC2 DNA Tc2 -1762 136 80 2021 132 4 0 chr3 83824545 83824826 -134212332 + AluSx SINE Alu 1 282 -30 324 0 0 0 chr3 83824828 83824864 -134212294 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 414 319 58 27 chr3 83824866 83825054 -134212104 - MIR SINE MIR -57 205 12 421 265 76 45 chr3 83827721 83827944 -134209214 - L2 LINE L2 -2 3311 3082 246 289 48 58 chr3 83827960 83828064 -134209094 - L2 LINE L2 -1 3271 3169 605 279 93 68 chr3 83828773 83829372 -134207786 + L1M4 LINE L1 1056 1754 -4873 317 279 64 14 chr3 83829390 83829530 -134207628 + MER103 DNA DNA 7 153 -13 1481 199 69 46 chr3 83829785 83830107 -134207051 + MLT1C LTR MaLR 25 361 -106 1941 150 0 38 chr3 83830107 83830454 -134206704 + MER1B DNA MER1_type 1 334 -3 1481 199 69 46 chr3 83830454 83830564 -134206594 + MLT1C LTR MaLR 361 467 0 437 316 32 0 chr3 83830630 83830774 -134206384 - MIR SINE MIR -46 162 13 2328 87 13 0 chr3 83831900 83832199 -134204959 + AluSx SINE Alu 1 303 -9 283 297 130 38 chr3 83832250 83832435 -134204723 - MLT1K LTR MaLR -286 302 101 198 0 0 0 chr3 83836325 83836347 -134200811 + (CA)n Simple_repeat Simple_repeat 1 22 0 2037 192 3 6 chr3 83837591 83837956 -134199202 + MLT1A1 LTR MaLR 1 364 -1 233 29 29 0 chr3 83838299 83838333 -134198825 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 280 198 22 66 chr3 83838352 83838443 -134198715 - LTR67 LTR ERVL -20 537 451 1753 166 0 27 chr3 83838904 83839199 -134197959 + AluSx SINE Alu 1 287 -25 264 122 0 0 chr3 83839208 83839249 -134197909 + (CA)n Simple_repeat Simple_repeat 2 42 0 911 231 19 12 chr3 83839581 83839837 -134197321 + L1MD3 LINE L1 7729 7986 -9 489 290 23 117 chr3 83840854 83841240 -134195918 + MLT1K LTR MaLR 3 352 -236 915 158 24 12 chr3 83841754 83841944 -134195214 - AluJb SINE Alu 0 312 134 375 278 151 14 chr3 83841944 83842156 -134195002 + MIR SINE MIR 20 260 -2 305 307 8 39 chr3 83842246 83842373 -134194785 + L2 LINE L2 2237 2359 -955 215 314 119 56 chr3 83842378 83842839 -134194319 + L2 LINE L2 2476 2965 -349 1501 162 63 93 chr3 83843113 83843392 -134193766 + Charlie4a DNA MER1_type 27 286 -1675 2209 125 7 0 chr3 83843392 83843696 -134193462 + AluSq SINE Alu 1 306 -7 1501 162 63 93 chr3 83843696 83843911 -134193247 + Charlie4a DNA MER1_type 286 506 -2 333 248 50 25 chr3 83843913 83844034 -134193124 + L2 LINE L2 3189 3312 -1 234 226 381 0 chr3 83845060 83845144 -134192014 + MER5A DNA MER1_type 74 189 0 22 0 0 0 chr3 83846119 83846141 -134191017 + AT_rich Low_complexity Low_complexity 1 22 0 1635 165 68 0 chr3 83846447 83846598 -134190560 - AluJb SINE Alu -22 290 151 207 0 0 0 chr3 83846598 83846621 -134190537 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1635 165 68 0 chr3 83846621 83846735 -134190423 - AluJb SINE Alu -161 151 7 243 328 0 0 chr3 83847051 83847115 -134190043 + MER5A DNA MER1_type 63 126 -63 1851 171 0 22 chr3 83847128 83847443 -134189715 - AluSx SINE Alu 0 312 5 1844 148 58 45 chr3 83847845 83848204 -134188954 + THE1B LTR MaLR 1 364 0 344 236 52 57 chr3 83848364 83848589 -134188569 - MLT1L LTR MaLR -325 290 3 294 278 33 0 chr3 83849839 83849929 -134187229 + L2 LINE L2 2519 2611 -703 608 286 78 81 chr3 83850038 83850510 -134186648 + L2 LINE L2 2842 3312 -1 464 335 36 6 chr3 83853325 83853492 -134183666 - MIR3 SINE MIR -3 205 34 254 200 20 0 chr3 83853621 83853671 -134183487 - L3 LINE CR1 -3 1574 1524 216 271 0 0 chr3 83853675 83853723 -134183435 - MIR3 SINE MIR -38 170 123 735 167 26 39 chr3 83854195 83854351 -134182807 + THE1C LTR MaLR 222 375 0 245 236 42 0 chr3 83854611 83854683 -134182475 + MIR SINE MIR 128 202 -60 313 283 192 0 chr3 83854785 83854884 -134182274 - L2 LINE L2 -3 3310 3193 908 186 10 30 chr3 83907064 83907263 -134129895 - AluSq SINE Alu -114 199 5 713 259 164 88 chr3 83907665 83908565 -134128593 + L1MEc LINE L1 2161 3086 -3129 1038 215 31 11 chr3 83908693 83908954 -134128204 + L1MEc LINE L1 459 724 -5672 2170 83 14 3 chr3 83911023 83911312 -134125846 - AluSx SINE Alu -20 292 1 372 306 0 0 chr3 83911669 83911767 -134125391 + MIR SINE MIR 163 260 -2 1225 141 5 5 chr3 83912833 83913025 -134124133 - AluJo SINE Alu 0 312 121 15154 98 2 0 chr3 83913045 83915980 -134121178 - L1PA8 LINE L1 -14 6158 3200 1192 108 6 0 chr3 83915981 83916148 -134121010 + AluSq SINE Alu 145 312 -1 194 0 39 0 chr3 83916439 83916465 -134120693 + (TA)n Simple_repeat Simple_repeat 2 28 0 1246 157 0 5 chr3 83917614 83917811 -134119347 + AluJb SINE Alu 12 207 -105 189 0 0 0 chr3 83918913 83918934 -134118224 + (GA)n Simple_repeat Simple_repeat 2 22 0 208 338 88 61 chr3 83919675 83919823 -134117335 + MER5A DNA MER1_type 38 189 0 1346 235 60 108 chr3 83921959 83922533 -134114625 + MLT1E LTR MaLR 1 544 -49 1999 141 28 0 chr3 83922533 83922823 -134114335 + AluJb SINE Alu 1 298 -14 1346 235 60 108 chr3 83922823 83922870 -134114288 + MLT1E LTR MaLR 544 592 -1 271 246 123 46 chr3 83923881 83924011 -134113147 - MIR SINE MIR -12 250 111 432 338 0 13 chr3 83924275 83924429 -134112729 + MIR3 SINE MIR 45 196 -12 186 133 0 0 chr3 83924521 83924551 -134112607 + (TA)n Simple_repeat Simple_repeat 2 31 0 541 229 129 12 chr3 83926152 83926322 -134110836 - MER2 DNA MER2_type 0 345 156 1867 171 68 32 chr3 83926344 83926784 -134110374 + LTR2B LTR ERV1 35 490 0 766 174 12 54 chr3 83926784 83926950 -134110208 - MER2 DNA MER2_type -186 159 1 308 125 47 0 chr3 83927574 83927638 -134109520 + MER92C LTR ERV1 488 554 0 374 248 18 18 chr3 83928003 83928116 -134109042 + MER31-int LTR ERV1 4359 4471 -465 382 280 0 10 chr3 83928737 83928837 -134108321 + MER92C LTR ERV1 7 105 -449 335 131 16 0 chr3 83929035 83929096 -134108062 + MER92C LTR ERV1 493 554 0 2082 137 6 13 chr3 83930215 83930553 -134106605 + AluJb SINE Alu 1 336 0 237 239 14 14 chr3 83930759 83930830 -134106328 - MLT1K LTR MaLR -4 584 514 284 273 44 124 chr3 83930930 83931293 -134105865 - L2 LINE L2 -60 3253 2920 1047 179 32 61 chr3 83931293 83931573 -134105585 - Charlie5 DNA MER1_type 0 2624 2353 943 198 0 35 chr3 83931577 83931779 -134105379 - Charlie5 DNA MER1_type -2417 195 1 201 377 85 0 chr3 83931784 83931914 -134105244 - L2 LINE L2 -434 2880 2740 1887 228 96 13 chr3 83931914 83932352 -134104806 - MLT1D LTR MaLR 0 505 31 1502 258 103 22 chr3 83932352 83932860 -134104298 - MER34 LTR ERV1 0 542 1 951 286 49 45 chr3 83933165 83933592 -134103566 + MLT1K LTR MaLR 158 586 -2 255 254 0 0 chr3 83934567 83934626 -134102532 - L2 LINE L2 0 3313 3255 940 94 0 0 chr3 83934636 83934753 -134102405 - AluSq/x SINE Alu -195 117 1 1247 195 66 102 chr3 83934980 83935391 -134101767 + MSTD LTR MaLR 1 396 0 602 273 24 34 chr3 83935779 83935988 -134101170 + L2 LINE L2 3107 3313 0 245 333 167 0 chr3 83936223 83936314 -134100844 + L2 LINE L2 3125 3244 -28 2633 181 58 21 chr3 83936314 83936799 -134100359 + MLT1D LTR MaLR 3 505 0 245 333 167 0 chr3 83936799 83936833 -134100325 + L2 LINE L2 3244 3271 -1 1857 187 78 19 chr3 83937868 83938020 -134099138 + MSTD LTR MaLR 1 143 -253 2180 154 31 11 chr3 83938020 83938377 -134098781 + THE1B LTR MaLR 1 364 0 1857 187 78 19 chr3 83938377 83938598 -134098560 + MSTD LTR MaLR 143 396 0 184 305 172 39 chr3 83939138 83939266 -134097892 + L2 LINE L2 3169 3313 0 305 269 65 9 chr3 83941681 83941789 -134095369 + MIR SINE MIR 2 115 -147 2657 147 23 14 chr3 83941815 83942243 -134094915 + MSTB1 LTR MaLR 1 432 0 2314 107 0 3 chr3 83942457 83942766 -134094392 - AluSq SINE Alu 0 313 6 21 0 0 0 chr3 83942772 83942793 -134094365 + AT_rich Low_complexity Low_complexity 1 21 0 470 314 76 0 chr3 83943143 83943315 -134093843 - MIR SINE MIR -6 256 72 260 271 0 17 chr3 83943445 83943504 -134093654 - MIR SINE MIR -203 59 2 301 231 0 77 chr3 83944376 83944480 -134092678 - LTR67 LTR ERVL -2 555 460 319 246 140 58 chr3 83944624 83944831 -134092327 - MLT1J LTR MaLR -193 318 95 228 167 74 56 chr3 83944788 83944842 -134092316 - LTR67 LTR ERVL -418 139 85 * 1241 161 13 61 chr3 83944884 83945114 -134092044 - MER20 DNA MER1_type 0 219 1 571 89 13 0 chr3 83945493 83945572 -134091586 + MADE1 DNA Mariner 1 80 0 247 339 37 9 chr3 83945687 83945796 -134091362 + MIR3 SINE MIR 82 193 -15 2305 144 30 11 chr3 83945805 83946173 -134090985 + THE1C LTR MaLR 1 375 0 1209 223 27 72 chr3 83948121 83948638 -134088520 - L1MC4 LINE L1 0 7877 7309 2042 92 7 4 chr3 83949289 83949562 -134087596 + AluSq SINE Alu 1 274 -39 534 107 0 0 chr3 83949562 83949637 -134087521 + AluSp/q SINE Alu 229 303 -10 553 212 71 66 chr3 83949638 83949734 -134087424 + MIR SINE MIR 46 140 -122 2099 132 7 0 chr3 83949734 83950037 -134087121 + AluSx SINE Alu 1 305 -7 553 212 71 66 chr3 83950037 83950138 -134087020 + MIR SINE MIR 140 244 -18 3036 167 29 13 chr3 83950206 83950750 -134086408 + L1MC2 LINE L1 5780 6332 -12 368 306 0 0 chr3 83951720 83951818 -134085340 - MIR SINE MIR -2 260 163 2325 87 3 13 chr3 83952176 83952486 -134084672 + AluSx SINE Alu 1 307 -5 955 234 0 0 chr3 83952525 83952713 -134084445 - MER5A DNA MER1_type -1 188 1 419 317 70 25 chr3 83952721 83952964 -134084194 + Charlie8 DNA MER1_type 1 254 -2163 1445 191 106 24 chr3 83953484 83953814 -134083344 + MLT1A1 LTR MaLR 9 365 0 24 0 0 0 chr3 83954605 83954629 -134082529 + AT_rich Low_complexity Low_complexity 1 24 0 860 154 0 0 chr3 83954988 83955124 -134082034 - FRAM SINE Alu -20 156 21 192 261 116 14 chr3 83955209 83955278 -134081880 - MER5A DNA MER1_type 0 189 114 836 125 69 7 chr3 83955278 83955422 -134081736 - LTR32 LTR ERVL 0 471 319 1847 151 24 24 chr3 83955480 83955812 -134081346 - LTR32 LTR ERVL -125 346 15 201 318 45 0 chr3 83955825 83955891 -134081267 - MER5B DNA MER1_type -109 69 1 1868 116 26 11 chr3 83955910 83956178 -134080980 + AluSx SINE Alu 21 292 -20 899 206 21 16 chr3 83956184 83956373 -134080785 - MER20 DNA MER1_type -3 216 27 1253 188 35 138 chr3 83958220 83958646 -134078512 + MLT1C LTR MaLR 7 465 -2 41614 51 3 50 chr3 83959306 83961062 -134076096 - L1PA4 LINE L1 -20 6135 4297 1414 110 25 46 chr3 83961062 83961299 -134075859 - LTR10A LTR ERV1 -61 548 317 41614 51 3 50 chr3 83961299 83965756 -134071402 - L1PA4 LINE L1 -1858 4297 2 22 70 0 0 chr3 83965897 83965940 -134071218 + AT_rich Low_complexity Low_complexity 1 43 0 4899 214 33 52 chr3 83967743 83969874 -134067284 + L1MD2 LINE L1 4257 6341 -18 189 274 0 48 chr3 83970409 83970471 -134066687 - L2 LINE L2 0 3313 3255 526 304 91 12 chr3 83970697 83970940 -134066218 - MIR SINE MIR 0 262 1 186 255 59 0 chr3 83970997 83971048 -134066110 - MER5A DNA MER1_type -98 91 38 1046 304 105 21 chr3 83971349 83972058 -134065100 - L2 LINE L2 -106 3207 2429 1969 128 3 33 chr3 83972118 83972423 -134064735 + AluSx SINE Alu 1 296 -16 200 311 27 40 chr3 83972423 83972497 -134064661 - L2 LINE L2 -242 3030 2958 356 321 134 5 chr3 83972829 83973053 -134064105 - L2 LINE L2 0 3313 3061 733 329 60 11 chr3 83973820 83974167 -134062991 + MLT1I LTR MaLR 41 404 -5 267 262 63 45 chr3 83974305 83974416 -134062742 + MIR SINE MIR 38 151 -57 2221 109 0 19 chr3 83974799 83975111 -134062047 - AluSx SINE Alu -6 306 1 716 291 73 33 chr3 83975330 83975660 -134061498 - MLT1I LTR MaLR -51 358 16 613 248 24 24 chr3 83977087 83977483 -134059675 - L1MC5 LINE L1 -271 7690 7261 861 194 62 47 chr3 83978237 83978448 -134058710 - MER20 DNA MER1_type -5 214 1 267 287 11 43 chr3 83978574 83978668 -134058490 + MIR SINE MIR 13 103 -159 219 306 144 27 chr3 83978725 83978836 -134058322 - MER5A DNA MER1_type -20 169 46 4555 161 26 33 chr3 83978906 83979388 -134057770 - L1MB3 LINE L1 -9 6174 5699 2080 136 3 16 chr3 83979388 83979704 -134057454 + AluSx SINE Alu 1 312 0 4555 161 26 33 chr3 83979704 83980094 -134057064 - L1MB3 LINE L1 -484 5699 5308 419 262 42 93 chr3 83980097 83980259 -134056899 + MIR SINE MIR 10 160 -102 2088 136 0 0 chr3 83980259 83980546 -134056612 - AluSx SINE Alu -25 287 1 419 262 42 93 chr3 83980546 83980597 -134056561 + MIR SINE MIR 160 212 -50 1815 175 3 10 chr3 83980802 83981116 -134056042 + AluJb SINE Alu 1 312 0 508 301 75 0 chr3 83982324 83982497 -134054661 + MIR SINE MIR 28 213 -49 279 283 103 62 chr3 83982503 83982587 -134054571 - MIR SINE MIR -99 163 69 619 159 40 99 chr3 83982587 83982688 -134054470 - MER53 DNA DNA 0 189 104 1261 193 32 54 chr3 83982688 83983004 -134054154 - AluJo SINE Alu -3 309 1 619 159 40 99 chr3 83983004 83983103 -134054055 - MER53 DNA DNA -85 104 1 279 283 103 62 chr3 83983103 83983163 -134053995 - MIR SINE MIR -193 69 13 403 276 78 31 chr3 83983249 83983441 -134053717 - MIR SINE MIR -16 246 46 235 274 27 14 chr3 83984190 83984263 -134052895 - L2 LINE L2 -1 3271 3198 1909 68 0 8 chr3 83984288 83984523 -134052635 - AluY SINE Alu -12 299 67 385 288 38 38 chr3 83984857 83984955 -134052203 - MLT1K LTR MaLR -4 584 484 2048 143 3 13 chr3 83984955 83985255 -134051903 + AluSx SINE Alu 1 297 -15 385 288 38 38 chr3 83985255 83985340 -134051818 - MLT1K LTR MaLR -103 485 401 430 307 95 6 chr3 83985942 83986121 -134051037 + MIR SINE MIR 65 259 -3 697 194 7 0 chr3 83986205 83986344 -134050814 - MER45A DNA AcHobo -8 170 31 27 62 0 0 chr3 83986889 83986937 -134050221 + AT_rich Low_complexity Low_complexity 1 48 0 467 110 96 0 chr3 83987950 83988023 -134049135 + AluJ/FLAM SINE Alu 5 84 -228 1577 154 66 29 chr3 83988035 83988355 -134048803 - AluJo SINE Alu 0 330 1 997 232 0 0 chr3 83988556 83988763 -134048395 + MER58A DNA MER1_type 2 208 -16 236 356 96 17 chr3 83988838 83988953 -134048205 - MIR SINE MIR -137 125 2 348 300 58 8 chr3 83989452 83989572 -134047586 + MIR SINE MIR 63 188 -74 2713 94 6 3 chr3 83989973 83990336 -134046822 + THE1B LTR MaLR 1 364 0 222 364 79 18 chr3 83990532 83990697 -134046461 - MIR SINE MIR -18 244 70 452 248 46 75 chr3 83991712 83991777 -134045381 - MIR SINE MIR -53 209 144 2016 148 7 0 chr3 83991777 83992075 -134045083 - AluSx SINE Alu -4 308 9 452 248 46 75 chr3 83992075 83992206 -134044952 - MIR SINE MIR -118 144 30 265 260 57 65 chr3 83992164 83992287 -134044871 + MIR SINE MIR 50 171 -91 * 2080 148 3 0 chr3 83992819 83993130 -134044028 - AluSx SINE Alu 0 312 1 208 315 8 161 chr3 83993160 83993420 -134043738 + L2 LINE L2 3041 3260 -12 858 156 0 0 chr3 83993438 83993573 -134043585 + FRAM SINE Alu 17 151 -25 1605 170 5 106 chr3 83994681 83995086 -134042072 + MER47A DNA MER2_type 1 364 -2 240 137 84 8 chr3 83995087 83995218 -134041940 + (TA)n Simple_repeat Simple_repeat 1 141 0 310 189 11 78 chr3 83995231 83995411 -134041747 + (TA)n Simple_repeat Simple_repeat 2 169 0 1046 149 0 0 chr3 83995429 83995610 -134041548 - MLT2B2 LTR ERVL -334 181 1 1552 189 21 28 chr3 83995716 83996007 -134041151 + AluJo SINE Alu 5 293 -19 1379 138 118 10 chr3 83996382 83996671 -134040487 + L1MA9 LINE L1 5992 6311 -1 391 198 0 12 chr3 83998167 83998248 -134038910 + L1ME3A LINE L1 5912 5991 -179 1313 173 0 68 chr3 83998308 83998557 -134038601 - AluJo SINE Alu -34 278 47 1294 190 23 13 chr3 83998564 83998864 -134038294 - L1MD3 LINE L1 -935 7060 6758 562 278 64 12 chr3 83999091 83999264 -134037894 + MIR SINE MIR 81 262 0 301 248 44 9 chr3 84000366 84000479 -134036679 + MER117 DNA MER1_type 9 125 -72 1642 200 13 23 chr3 84000795 84001105 -134036053 + AluJo SINE Alu 1 307 -5 1121 290 59 14 chr3 84001300 84001894 -134035264 - L1ME3A LINE L1 -248 5991 5371 484 309 77 8 chr3 84001921 84002284 -134034874 - L1ME3A LINE L1 -1131 5084 4697 1648 201 0 3 chr3 84002551 84002840 -134034318 - AluJb SINE Alu -24 288 1 266 290 55 6 chr3 84002844 84003007 -134034151 - L1ME3A LINE L1 -1958 4257 4084 313 315 49 39 chr3 84003217 84003525 -134033633 - L1ME3A LINE L1 -2317 3898 3588 3324 235 81 40 chr3 84003878 84005871 -134031287 - L1ME1 LINE L1 -4 6660 4596 258 272 43 49 chr3 84005876 84005946 -134031212 - L1ME1 LINE L1 -4902 1786 1717 2263 82 0 3 chr3 84005946 84006237 -134030921 - AluY SINE Alu -21 290 1 258 272 43 49 chr3 84006237 84006350 -134030808 - L1ME1 LINE L1 -4971 1717 1458 2289 209 68 23 chr3 84006380 84007089 -134030069 - L1ME1 LINE L1 -5197 1628 888 21 36 0 0 chr3 84007278 84007306 -134029852 + AT_rich Low_complexity Low_complexity 1 28 0 665 286 86 44 chr3 84007382 84007767 -134029391 - L1ME3A LINE L1 -3379 2836 2436 372 283 165 32 chr3 84007838 84008117 -134029041 - L1ME3A LINE L1 -3920 2476 2161 2248 102 0 10 chr3 84008517 84008812 -134028346 + AluSx SINE Alu 1 292 -20 1132 281 132 24 chr3 84010939 84011853 -134025305 + L2 LINE L2 2249 3309 -4 2157 135 0 0 chr3 84012564 84012861 -134024297 - AluSx SINE Alu -14 298 2 290 269 37 28 chr3 84013382 84013490 -134023668 + L2 LINE L2 2871 2979 -334 545 211 46 26 chr3 84013491 84013643 -134023515 - MLT1K LTR MaLR 0 588 434 291 271 205 27 chr3 84014262 84014467 -134022691 - MIR SINE MIR -12 250 11 1938 106 13 68 chr3 84014925 84015236 -134021922 - AluSx SINE Alu -18 294 1 197 344 33 71 chr3 84015374 84015478 -134021680 + MIR SINE MIR 16 112 -150 2272 106 0 10 chr3 84015478 84015790 -134021368 + AluSx SINE Alu 1 309 -3 197 344 33 71 chr3 84015790 84015868 -134021290 + MIR SINE MIR 112 191 -71 185 333 17 0 chr3 84015916 84015976 -134021182 + MIR SINE MIR 27 87 -175 637 252 85 91 chr3 84015983 84016444 -134020714 - L2 LINE L2 0 3313 2856 262 260 154 0 chr3 84016445 84016549 -134020609 + MIR SINE MIR 92 211 -51 352 345 77 31 chr3 84016674 84016935 -134020223 + L2 LINE L2 2944 3216 -56 229 260 0 0 chr3 84016949 84016999 -134020159 + (TGGA)n Simple_repeat Simple_repeat 1 50 0 415 327 43 6 chr3 84017151 84017313 -134019845 - MIR3 SINE MIR -6 202 35 266 60 4 0 chr3 84017549 84017594 -134019564 - L1PA16 LINE L1 -2 6154 6109 231 36 0 0 chr3 84019043 84019071 -134018087 + (GAAA)n Simple_repeat Simple_repeat 3 30 0 26 50 0 0 chr3 84019584 84019624 -134017534 + AT_rich Low_complexity Low_complexity 1 40 0 192 40 0 0 chr3 84020455 84020480 -134016678 + (CA)n Simple_repeat Simple_repeat 2 26 0 225 0 0 0 chr3 84021548 84021573 -134015585 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 285 98 0 0 chr3 84022490 84022531 -134014627 + (CA)n Simple_repeat Simple_repeat 2 42 0 351 0 0 0 chr3 84023408 84023447 -134013711 + (T)n Simple_repeat Simple_repeat 1 39 0 240 111 0 0 chr3 84024870 84024906 -134012252 + (A)n Simple_repeat Simple_repeat 1 36 0 270 0 0 0 chr3 84025411 84025441 -134011717 + (A)n Simple_repeat Simple_repeat 1 30 0 668 243 30 20 chr3 84026173 84026375 -134010783 - MER3 DNA MER1_type -5 204 1 516 206 233 0 chr3 84026427 84026573 -134010585 - MER5A DNA MER1_type -6 183 4 2331 41 41 10 chr3 84027515 84027805 -134009353 - AluY SINE Alu -12 299 1 1950 142 0 0 chr3 84027900 84028204 -134008954 - AluSx SINE Alu 0 304 1 535 230 36 133 chr3 84028348 84028453 -134008705 - MER45A DNA AcHobo -1404 177 98 766 183 0 8 chr3 84028453 84028579 -134008579 + FLAM_A SINE Alu 1 125 -8 535 230 36 133 chr3 84028579 84028669 -134008489 - MER45A DNA AcHobo -1483 98 1 411 268 35 45 chr3 84028945 84029143 -134008015 - L1ME LINE L1 -394 5727 5532 514 78 6 0 chr3 84029633 84029724 -134007434 + L1MA4 LINE L1 6198 6290 -10 192 125 0 0 chr3 84034297 84034329 -134002829 + (T)n Simple_repeat Simple_repeat 1 32 0 306 67 0 0 chr3 84034357 84034402 -134002756 + (T)n Simple_repeat Simple_repeat 1 45 0 22 0 0 0 chr3 84036050 84036072 -134001086 + AT_rich Low_complexity Low_complexity 1 22 0 373 213 328 11 chr3 84036294 84036468 -134000690 - MER106A DNA MER1_type -7 229 1 185 0 0 39 chr3 84039907 84039933 -133997225 + (CCCCG)n Simple_repeat Simple_repeat 1 25 0 1777 173 24 3 chr3 84040971 84041266 -133995892 - AluJo SINE Alu -11 301 1 1982 135 0 13 chr3 84042723 84043027 -133994131 - AluJo SINE Alu -12 300 1 346 192 25 92 chr3 84045160 84045280 -133991878 + MER3 DNA MER1_type 98 209 0 1936 153 36 0 chr3 84045658 84045779 -133991379 + AluJb SINE Alu 1 116 -196 183 80 0 0 chr3 84045779 84045804 -133991354 + (CA)n Simple_repeat Simple_repeat 2 26 0 1936 153 36 0 chr3 84045804 84045983 -133991175 + AluJb SINE Alu 116 312 0 369 222 71 50 chr3 84047108 84047207 -133989951 - MIR SINE MIR -70 192 92 243 0 0 0 chr3 84047864 84047891 -133989267 + (A)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr3 84049266 84049287 -133987871 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 84049367 84049389 -133987769 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr3 84049813 84049833 -133987325 + (TTTCC)n Simple_repeat Simple_repeat 3 22 0 331 316 133 62 chr3 84051031 84051287 -133985871 + L2 LINE L2 2995 3268 -4 183 246 88 53 chr3 84054446 84054503 -133982655 + L2 LINE L2 3170 3228 -44 182 37 37 0 chr3 84055629 84055656 -133981502 + (GA)n Simple_repeat Simple_repeat 1 28 0 23 0 0 0 chr3 84056248 84056271 -133980887 + AT_rich Low_complexity Low_complexity 1 23 0 394 338 113 24 chr3 84057504 84057717 -133979441 + MIR SINE MIR 16 247 -15 22 0 0 0 chr3 84057722 84057744 -133979414 + AT_rich Low_complexity Low_complexity 1 22 0 220 409 43 0 chr3 84058426 84058541 -133978617 - MIR SINE MIR -67 141 22 307 225 36 66 chr3 84060086 84060212 -133976946 + MIR SINE MIR 3 136 -72 2064 120 3 10 chr3 84060396 84060697 -133976461 + AluSx SINE Alu 14 312 0 205 271 35 47 chr3 84060755 84060840 -133976318 + MIR SINE MIR 163 246 -16 572 195 0 34 chr3 84060929 84061047 -133976111 - MER81 DNA DNA 0 114 1 1944 122 14 7 chr3 84062669 84062957 -133974201 - AluSp SINE Alu -23 290 1 257 310 78 21 chr3 84064386 84064528 -133972630 + L2 LINE L2 3164 3313 0 282 167 0 0 chr3 84064528 84064588 -133972570 + (TGGA)n Simple_repeat Simple_repeat 2 61 0 1129 208 107 31 chr3 84064809 84065126 -133972032 - MER58B DNA MER1_type 0 341 1 2234 89 0 0 chr3 84065755 84066037 -133971121 - AluSg SINE Alu -8 302 21 180 0 0 0 chr3 84066971 84066991 -133970167 + (TA)n Simple_repeat Simple_repeat 1 20 0 477 0 0 0 chr3 84067464 84067517 -133969641 + (TAAAA)n Simple_repeat Simple_repeat 2 54 0 274 294 35 24 chr3 84069406 84069491 -133967667 - MIR3 SINE MIR -51 157 72 21 36 0 0 chr3 84070534 84070562 -133966596 + AT_rich Low_complexity Low_complexity 1 28 0 228 35 0 0 chr3 84071984 84072013 -133965145 + (A)n Simple_repeat Simple_repeat 1 29 0 206 412 0 0 chr3 84072278 84072329 -133964829 + C-rich Low_complexity Low_complexity 1 51 0 193 247 13 13 chr3 84072332 84072409 -133964749 + CT-rich Low_complexity Low_complexity 1 77 0 428 198 81 9 chr3 84073725 84073836 -133963322 + Tigger4(Zombi) DNA MER2_type 2612 2730 -1 217 241 84 48 chr3 84074756 84074839 -133962319 + MIR SINE MIR 90 175 -87 261 0 0 0 chr3 84075376 84075405 -133961753 + (A)n Simple_repeat Simple_repeat 1 29 0 31 0 0 0 chr3 84076315 84076346 -133960812 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr3 84079215 84079237 -133957921 + GC_rich Low_complexity Low_complexity 1 22 0 645 196 0 68 chr3 84079397 84079560 -133957598 + MER58B DNA MER1_type 189 340 -1 1475 214 0 25 chr3 84079826 84080111 -133957047 - AluJo SINE Alu -24 288 11 995 243 14 14 chr3 84080333 84080555 -133956603 + MIR SINE MIR 4 225 -37 786 265 157 61 chr3 84081228 84081737 -133955421 + MLT1K LTR MaLR 15 572 -16 8356 41 11 5 chr3 84083462 84085216 -133951942 + L1PA5 LINE L1 4388 6152 -2 216 0 0 0 chr3 84085230 84085254 -133951904 + (CAA)n Simple_repeat Simple_repeat 1 24 0 360 64 0 0 chr3 84086722 84086769 -133950389 + (CA)n Simple_repeat Simple_repeat 2 48 0 220 234 0 0 chr3 84087068 84087115 -133950043 + A-rich Low_complexity Low_complexity 1 47 0 264 294 50 73 chr3 84087626 84087969 -133949189 - L1ME LINE L1 -225 5896 5562 1940 109 3 25 chr3 84089616 84089900 -133947258 + AluSq SINE Alu 4 281 -32 284 0 28 0 chr3 84089907 84089943 -133947215 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 22 0 0 0 chr3 84090219 84090241 -133946917 + AT_rich Low_complexity Low_complexity 1 22 0 3843 199 46 12 chr3 84091105 84092289 -133944869 - L1MB7 LINE L1 -13 6171 4879 210 350 68 0 chr3 84092724 84092827 -133944331 + MIR SINE MIR 39 148 -60 270 0 0 0 chr3 84095239 84095269 -133941889 + (A)n Simple_repeat Simple_repeat 1 30 0 758 243 30 20 chr3 84096001 84096203 -133940955 - MER3 DNA MER1_type -5 204 1 524 206 233 0 chr3 84096255 84096401 -133940757 - MER5A DNA MER1_type -6 183 4 2353 41 41 10 chr3 84097343 84097633 -133939525 - AluY SINE Alu -12 299 1 2013 132 0 7 chr3 84097727 84098022 -133939136 - AluSx SINE Alu -9 303 11 597 230 36 133 chr3 84098176 84098281 -133938877 - MER45A DNA AcHobo -1404 177 98 813 183 0 8 chr3 84098281 84098407 -133938751 + FLAM_A SINE Alu 1 125 -8 597 230 36 133 chr3 84098407 84098497 -133938661 - MER45A DNA AcHobo -1483 98 1 501 265 73 56 chr3 84098684 84098971 -133938187 - L1ME LINE L1 -298 5823 5532 553 78 6 0 chr3 84099461 84099552 -133937606 + L1MA4 LINE L1 6198 6290 -10 306 67 0 0 chr3 84104185 84104230 -133932928 + (T)n Simple_repeat Simple_repeat 1 45 0 22 0 0 0 chr3 84105878 84105900 -133931258 + AT_rich Low_complexity Low_complexity 1 22 0 426 218 328 11 chr3 84106122 84106296 -133930862 - MER106A DNA MER1_type -7 229 1 183 211 96 0 chr3 84107129 84107181 -133929977 - MIR SINE MIR -88 174 118 1840 144 20 17 chr3 84107360 84107652 -133929506 - AluSx SINE Alu -19 293 1 573 249 146 24 chr3 84108250 84108455 -133928703 + MIR SINE MIR 23 252 -10 1887 148 3 29 chr3 84108832 84109143 -133928015 - AluJo SINE Alu -9 303 1 2349 88 3 0 chr3 84110960 84111256 -133925902 - AluSp SINE Alu -16 297 1 313 321 142 47 chr3 84112232 84112612 -133924546 - L3 LINE CR1 -448 1129 714 260 188 14 58 chr3 84112879 84112948 -133924210 + L2 LINE L2 3207 3272 0 407 309 52 7 chr3 84112953 84113089 -133924069 - MIR SINE MIR -68 194 53 538 261 34 48 chr3 84114471 84114678 -133922480 - MIR3 SINE MIR -4 204 1 760 216 30 0 chr3 84114945 84115112 -133922046 - MER3 DNA MER1_type 0 209 38 2336 108 7 0 chr3 84115123 84115430 -133921728 + AluSx SINE Alu 2 310 -2 2066 55 4 8 chr3 84115510 84115764 -133921394 + L1PA7 LINE L1 5902 6154 0 182 354 0 0 chr3 84115834 84115899 -133921259 - MIR3 SINE MIR -31 177 113 1170 296 31 52 chr3 84116108 84116195 -133920963 + MLT1K LTR MaLR 83 170 -418 2310 161 80 5 chr3 84116195 84116593 -133920565 + MSTA LTR MaLR 1 428 0 1170 296 31 52 chr3 84116593 84117022 -133920136 + MLT1K LTR MaLR 170 588 0 1232 167 0 5 chr3 84117876 84118080 -133919078 + AluJo SINE Alu 1 203 -109 1518 195 10 36 chr3 84118268 84118576 -133918582 - AluJo SINE Alu -12 300 1 1227 212 0 19 chr3 84118869 84119176 -133917982 - AluSc SINE Alu 0 309 9 22 56 0 0 chr3 84119540 84119576 -133917582 + AT_rich Low_complexity Low_complexity 1 36 0 341 222 300 15 chr3 84120357 84120700 -133916458 + LTR33 LTR ERVL 15 455 -66 367 214 29 79 chr3 84121958 84122043 -133915115 - MLT1H LTR MaLR -416 133 56 2063 130 3 3 chr3 84122043 84122344 -133914814 + AluSx SINE Alu 1 301 -11 367 214 29 79 chr3 84122344 84122398 -133914760 - MLT1H LTR MaLR -493 56 1 1508 251 26 2 chr3 84122665 84123087 -133914071 + L1MB3 LINE L1 5739 6170 -13 315 242 0 71 chr3 84124979 84125078 -133912080 + MIR SINE MIR 62 153 -109 807 109 9 0 chr3 84125540 84125650 -133911508 - FRAM SINE Alu -12 164 54 360 64 0 0 chr3 84126516 84126563 -133910595 + (CA)n Simple_repeat Simple_repeat 2 48 0 220 234 0 0 chr3 84126862 84126909 -133910249 + A-rich Low_complexity Low_complexity 1 47 0 264 294 50 73 chr3 84127420 84127763 -133909395 - L1ME LINE L1 -225 5896 5562 1940 109 3 25 chr3 84129410 84129694 -133907464 + AluSq SINE Alu 4 281 -32 284 0 28 0 chr3 84129701 84129737 -133907421 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 22 0 0 0 chr3 84130013 84130035 -133907123 + AT_rich Low_complexity Low_complexity 1 22 0 4016 199 45 7 chr3 84130899 84132078 -133905080 - L1MB7 LINE L1 -13 6171 4879 210 350 68 0 chr3 84132513 84132616 -133904542 + MIR SINE MIR 39 148 -60 268 205 128 17 chr3 84134930 84135047 -133902111 - MER113 DNA MER1_type? -376 145 16 195 258 103 52 chr3 84135166 84135263 -133901895 - MER5A DNA MER1_type -84 105 4 274 216 108 50 chr3 84136065 84136204 -133900954 - MER113 DNA MER1_type? -369 152 6 286 168 176 50 chr3 84137627 84137746 -133899412 + Charlie7 DNA MER1_type 2479 2612 0 260 214 150 43 chr3 84138197 84138337 -133898821 - MER5A DNA MER1_type 0 189 35 * 678 197 8 8 chr3 84138221 84138353 -133898805 + MER5A DNA MER1_type 51 182 -7 3708 139 8 8 chr3 84138437 84138963 -133898195 - MER1A DNA MER1_type -1 526 1 328 290 28 28 chr3 84139082 84139189 -133897969 - L2 LINE L2 -23 3290 3184 2202 130 0 0 chr3 84139248 84139548 -133897610 - AluSx SINE Alu -12 300 1 296 340 71 7 chr3 84139630 84139771 -133897387 + L2 LINE L2 3123 3272 0 522 238 69 31 chr3 84139787 84139947 -133897211 - MIR SINE MIR 0 262 97 430 294 191 18 chr3 84140156 84140496 -133896662 + L2 LINE L2 2911 3309 -4 233 29 29 0 chr3 84141583 84141617 -133895541 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 207 0 0 0 chr3 84143461 84143484 -133893674 + (A)n Simple_repeat Simple_repeat 1 23 0 388 258 87 15 chr3 84144235 84144386 -133892772 + MIR SINE MIR 33 192 -60 187 28 56 28 chr3 84144393 84144429 -133892729 + (TAAAAA)n Simple_repeat Simple_repeat 2 38 0 211 254 0 34 chr3 84144455 84144514 -133892644 + MIR SINE MIR 200 256 -6 425 226 212 7 chr3 84144903 84145040 -133892118 - MER5A DNA MER1_type 0 189 25 246 315 11 34 chr3 84145077 84145166 -133891992 + MER5A DNA MER1_type 63 149 -40 1293 196 23 0 chr3 84145216 84145435 -133891723 - MER58A DNA MER1_type 0 224 1 602 276 23 37 chr3 84146853 84147070 -133890088 + MIR SINE MIR 48 261 -1 1747 148 26 46 chr3 84148519 84148823 -133888335 - AluJo SINE Alu -14 298 1 465 97 0 0 chr3 84149938 84150010 -133887148 + (TG)n Simple_repeat Simple_repeat 2 73 0 199 51 0 51 chr3 84152356 84152395 -133884763 + (CAA)n Simple_repeat Simple_repeat 3 39 0 296 300 0 0 chr3 84155912 84155992 -133881166 + CT-rich Low_complexity Low_complexity 2 81 0 22 0 0 0 chr3 84158401 84158423 -133878735 + AT_rich Low_complexity Low_complexity 1 22 0 215 217 0 0 chr3 84164602 84164648 -133872510 + A-rich Low_complexity Low_complexity 2 47 0 744 227 10 6 chr3 84165884 84166053 -133871105 + L1ME2 LINE L1 6002 6176 -2 306 0 0 0 chr3 84167147 84167181 -133869977 + (T)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr3 84168736 84168758 -133868400 + AT_rich Low_complexity Low_complexity 1 22 0 29 70 0 0 chr3 84174701 84174758 -133862400 + GC_rich Low_complexity Low_complexity 1 57 0 23 33 0 0 chr3 84174816 84174846 -133862312 + GC_rich Low_complexity Low_complexity 1 30 0 243 0 0 0 chr3 84174879 84174906 -133862252 + (CCGCG)n Simple_repeat Simple_repeat 1 27 0 41 21 0 0 chr3 84174920 84174968 -133862190 + GC_rich Low_complexity Low_complexity 1 48 0 22 35 0 0 chr3 84175109 84175138 -133862020 + GC_rich Low_complexity Low_complexity 1 29 0 326 172 0 17 chr3 84177400 84177458 -133859700 - MIR SINE MIR -61 147 91 1595 171 60 17 chr3 84177468 84177585 -133859573 + AluJo SINE Alu 1 111 -201 423 0 0 0 chr3 84177585 84177632 -133859526 + (CA)n Simple_repeat Simple_repeat 2 48 0 1595 171 60 17 chr3 84177632 84177812 -133859346 + AluJo SINE Alu 111 311 -1 337 281 33 16 chr3 84181317 84181438 -133855720 + MIR3 SINE MIR 46 168 -40 2231 99 3 7 chr3 84181441 84181743 -133855415 - AluSq SINE Alu -12 301 1 258 32 0 0 chr3 84181753 84181784 -133855374 + (CAA)n Simple_repeat Simple_repeat 2 32 0 1458 178 24 42 chr3 84181907 84182194 -133854964 + AluJb SINE Alu 1 282 -30 22 0 0 0 chr3 84182852 84182874 -133854284 + AT_rich Low_complexity Low_complexity 1 22 0 257 291 118 18 chr3 84183398 84183508 -133853650 + MIR SINE MIR 49 169 -93 331 225 38 0 chr3 84184013 84184093 -133853065 - MIR SINE MIR -75 187 105 1980 136 3 3 chr3 84184110 84184396 -133852762 - AluSx SINE Alu -26 286 1 573 249 146 24 chr3 84184994 84185199 -133851959 + MIR SINE MIR 23 252 -10 1887 148 3 29 chr3 84185576 84185887 -133851271 - AluJo SINE Alu -9 303 1 2353 85 3 0 chr3 84187704 84187999 -133849159 - AluSp SINE Alu -17 296 1 306 322 143 48 chr3 84188975 84189354 -133847804 - L3 LINE CR1 -448 1129 715 260 188 14 58 chr3 84189621 84189690 -133847468 + L2 LINE L2 3207 3272 0 407 309 52 7 chr3 84189695 84189831 -133847327 - MIR SINE MIR -68 194 53 538 261 34 48 chr3 84191213 84191420 -133845738 - MIR3 SINE MIR -4 204 1 760 216 30 0 chr3 84191687 84191854 -133845304 - MER3 DNA MER1_type 0 209 38 2440 101 0 0 chr3 84191865 84192173 -133844985 + AluSx SINE Alu 2 309 -3 2066 55 4 8 chr3 84192253 84192507 -133844651 + L1PA7 LINE L1 5902 6154 0 182 354 0 0 chr3 84192577 84192642 -133844516 - MIR3 SINE MIR -31 177 113 1158 298 31 52 chr3 84192851 84192938 -133844220 + MLT1K LTR MaLR 83 170 -418 2310 161 80 5 chr3 84192938 84193336 -133843822 + MSTA LTR MaLR 1 428 0 1158 298 31 52 chr3 84193336 84193765 -133843393 + MLT1K LTR MaLR 170 588 0 1232 167 0 5 chr3 84194619 84194823 -133842335 + AluJo SINE Alu 1 203 -109 1518 195 10 36 chr3 84195011 84195319 -133841839 - AluJo SINE Alu -12 300 1 2428 86 0 0 chr3 84195614 84195917 -133841241 - AluSc SINE Alu 0 309 7 190 243 314 0 chr3 84195925 84195995 -133841163 - MIR SINE MIR -119 143 52 533 303 76 51 chr3 84198037 84198430 -133838728 + L2 LINE L2 2904 3306 -7 1812 207 160 11 chr3 84198982 84199427 -133837731 + MLT1F LTR MaLR 2 512 -30 498 193 86 146 chr3 84199812 84200045 -133837113 - Charlie8 DNA MER1_type -2197 220 2 510 17 0 0 chr3 84200992 84201051 -133836107 + (TG)n Simple_repeat Simple_repeat 2 60 0 2097 93 11 11 chr3 84201128 84201455 -133835703 + AluSx SINE Alu 3 329 0 21 71 0 0 chr3 84201655 84201697 -133835461 + AT_rich Low_complexity Low_complexity 1 42 0 2476 87 0 6 chr3 84201824 84202135 -133835023 + AluSx SINE Alu 1 309 -3 1197 95 6 34 chr3 84202136 84202315 -133834843 + AluSg/x SINE Alu 130 303 -9 2239 86 26 10 chr3 84202900 84203204 -133833954 + AluSx SINE Alu 4 312 0 553 191 0 0 chr3 84203233 84203279 -133833879 + MER3 DNA MER1_type 2 47 -162 525 235 0 8 chr3 84203279 84203398 -133833760 - MER3 DNA MER1_type 0 209 92 1319 194 63 44 chr3 84203994 84204186 -133832972 - MER58B DNA MER1_type -2079 341 139 1544 50 0 0 chr3 84204186 84204366 -133832792 - AluY SINE Alu 0 311 132 1319 194 63 44 chr3 84204366 84204488 -133832670 - MER58B DNA MER1_type -2281 139 21 325 286 28 39 chr3 84206184 84206329 -133830829 - MER5A DNA MER1_type -2 187 35 211 357 0 0 chr3 84206569 84206639 -133830519 + MER91B DNA MER1_type 62 131 -59 354 277 40 10 chr3 84206653 84206754 -133830404 + MER91B DNA MER1_type 87 190 0 488 290 43 49 chr3 84206883 84207045 -133830113 - MER91A DNA MER1_type -22 174 14 1783 176 63 3 chr3 84207064 84207382 -133829776 + MER58B DNA MER1_type 5 341 0 188 167 21 0 chr3 84208546 84208594 -133828564 + (TTCA)n Simple_repeat Simple_repeat 4 52 0 427 250 75 0 chr3 84208865 84208985 -133828173 - MIR SINE MIR -14 248 120 2105 101 0 4 chr3 84209151 84209464 -133827694 + AluSx SINE Alu 8 319 0 734 255 44 10 chr3 84209484 84209688 -133827470 - MIR SINE MIR -50 212 2 393 146 82 45 chr3 84210039 84210149 -133827009 - MER117 DNA MER1_type -33 164 51 1000 191 23 0 chr3 84212719 84212892 -133824266 + MIR SINE MIR 2 178 -84 261 75 0 0 chr3 84213097 84213137 -133824021 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 261 135 0 0 chr3 84215665 84215717 -133821441 + (CA)n Simple_repeat Simple_repeat 1 52 0 270 276 82 31 chr3 84215954 84216052 -133821106 + MIR SINE MIR 42 144 -64 2139 88 42 0 chr3 84216254 84216538 -133820620 - AluSg SINE Alu -14 296 1 730 177 16 24 chr3 84216540 84216664 -133820494 - FLAM_A SINE Alu -12 130 8 1743 164 24 7 chr3 84216688 84216981 -133820177 - AluJb SINE Alu -12 300 3 2192 114 3 0 chr3 84218399 84218688 -133818470 + AluSx SINE Alu 2 291 -21 2275 99 0 3 chr3 84221311 84221613 -133815545 - AluSq SINE Alu -12 301 1 799 219 47 6 chr3 84221858 84222027 -133815131 - MER20 DNA MER1_type -14 205 30 1844 135 56 17 chr3 84223363 84223699 -133813459 + AluSg SINE Alu 1 310 0 180 0 0 0 chr3 84225212 84225232 -133811926 + (TTA)n Simple_repeat Simple_repeat 3 22 0 315 0 0 0 chr3 84225232 84225267 -133811891 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2329 85 0 0 chr3 84225269 84225551 -133811607 - AluSx SINE Alu -30 282 1 2080 133 7 0 chr3 84225649 84225950 -133811208 - AluSx SINE Alu -9 303 1 1904 179 3 0 chr3 84227004 84227301 -133809857 - AluJb SINE Alu -14 298 1 250 254 42 0 chr3 84227462 84227533 -133809625 + GA-rich Low_complexity Low_complexity 1 74 0 1480 228 17 40 chr3 84228545 84228892 -133808266 + MER58B DNA MER1_type 1 339 -2 22 0 0 0 chr3 84229807 84229829 -133807329 + AT_rich Low_complexity Low_complexity 1 22 0 198 103 0 0 chr3 84230943 84230972 -133806186 + (T)n Simple_repeat Simple_repeat 1 29 0 356 257 30 72 chr3 84232501 84232707 -133804451 - MIR SINE MIR -10 252 60 933 133 51 6 chr3 84233886 84234044 -133803114 + L1PA16 LINE L1 5992 6156 -10 23 0 0 0 chr3 84234045 84234068 -133803090 + AT_rich Low_complexity Low_complexity 1 23 0 209 347 13 0 chr3 84234607 84234682 -133802476 + MIR SINE MIR 175 250 -12 186 216 0 0 chr3 84235170 84235207 -133801951 - MIR SINE MIR -146 116 80 731 241 150 10 chr3 84235736 84235943 -133801215 + MIR SINE MIR 2 237 -25 2246 97 0 31 chr3 84236117 84236438 -133800720 + AluY SINE Alu 1 311 0 1872 151 0 37 chr3 84236456 84236780 -133800378 + AluJb SINE Alu 1 312 0 521 114 0 0 chr3 84236457 84236838 -133800320 + AluJo SINE Alu 2 382 0 207 161 0 0 chr3 84239255 84239286 -133797872 + (CA)n Simple_repeat Simple_repeat 2 32 0 203 189 0 0 chr3 84241311 84241348 -133795810 + A-rich Low_complexity Low_complexity 1 37 0 186 133 0 0 chr3 84244368 84244398 -133792760 + (TAGA)n Simple_repeat Simple_repeat 2 31 0 2367 80 7 7 chr3 84244890 84245192 -133791966 + AluSc SINE Alu 1 302 -7 180 0 0 0 chr3 84247688 84247708 -133789450 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 22 35 0 0 chr3 84248348 84248377 -133788781 + AT_rich Low_complexity Low_complexity 1 29 0 219 203 109 31 chr3 84249021 84249085 -133788073 - MIR SINE MIR -87 175 107 2113 168 29 3 chr3 84250022 84250373 -133786785 - MER46B DNA MER2_type -1 235 1 445 259 27 0 chr3 84250512 84250624 -133786534 - MIR SINE MIR -78 184 70 700 203 39 0 chr3 84250753 84250881 -133786277 + FLAM_A SINE Alu 1 133 0 2219 115 0 3 chr3 84250902 84251206 -133785952 + AluSc SINE Alu 1 303 -6 365 293 41 0 chr3 84251508 84251631 -133785527 - L2 LINE L2 -8 3264 3137 2169 212 103 36 chr3 84252174 84252759 -133784399 + MLT1E3 LTR MaLR 1 624 0 270 0 0 0 chr3 84252878 84252908 -133784250 + (CAGGG)n Simple_repeat Simple_repeat 2 31 0 300 152 0 42 chr3 84252938 84253014 -133784144 + MIR SINE MIR 85 141 -67 607 247 95 0 chr3 84253366 84253524 -133783634 + MIR SINE MIR 34 206 -56 894 142 0 0 chr3 84253527 84253654 -133783504 + FLAM_C SINE Alu 1 127 -16 2700 234 82 41 chr3 84254647 84255170 -133781988 - L1ME1 LINE L1 -62 6104 5555 2103 103 3 21 chr3 84255170 84255490 -133781668 + AluSx SINE Alu 1 315 0 2700 234 82 41 chr3 84255490 84255864 -133781294 - L1ME1 LINE L1 -611 5555 5198 28 0 0 0 chr3 84256419 84256447 -133780711 + AT_rich Low_complexity Low_complexity 1 28 0 409 285 121 75 chr3 84257092 84257373 -133779785 + L2 LINE L2 2636 2929 -385 306 336 67 28 chr3 84257720 84258003 -133779155 + L1M4 LINE L1 5052 5345 -801 2334 86 0 13 chr3 84258009 84258311 -133778847 + AluSx SINE Alu 1 298 -14 250 232 146 0 chr3 84258570 84258652 -133778506 + MIR SINE MIR 117 210 -52 212 362 64 21 chr3 84258841 84258935 -133778223 - L2 LINE L2 -190 3082 2985 296 326 22 0 chr3 84258990 84259082 -133778076 - L2 LINE L2 -41 3231 3138 357 205 26 100 chr3 84259253 84259433 -133777725 + MER104 DNA Tc2 3 182 0 21 0 0 0 chr3 84259470 84259491 -133777667 + AT_rich Low_complexity Low_complexity 1 21 0 397 278 64 46 chr3 84260953 84261126 -133776032 + MIR SINE MIR 12 187 -75 2430 219 105 3 chr3 84261805 84262384 -133774774 + MLT1E1 LTR MaLR 17 654 0 635 311 23 18 chr3 84262511 84262828 -133774330 + MIR SINE MIR 2 188 -20 198 0 0 0 chr3 84263990 84264012 -133773146 + (TTC)n Simple_repeat Simple_repeat 3 24 0 1219 144 74 51 chr3 84264012 84264269 -133772889 - L1MA7 LINE L1 0 6291 6029 668 262 119 0 chr3 84264500 84264702 -133772456 + MIR SINE MIR 1 226 -36 847 196 230 33 chr3 84265210 84265480 -133771678 - MER33 DNA MER1_type -1 323 1 238 232 0 98 chr3 84267635 84267717 -133769441 - L2 LINE L2 -55 3258 3185 1754 164 0 4 chr3 84267719 84267994 -133769164 + AluSx SINE Alu 1 274 -38 529 191 0 20 chr3 84267994 84268141 -133769017 + GA-rich Low_complexity Low_complexity 2 145 0 1859 155 7 3 chr3 84268738 84269042 -133768116 + AluJo SINE Alu 1 305 -7 1118 276 72 39 chr3 84269152 84269584 -133767574 + L3b LINE CR1 1114 1559 -24 946 146 36 26 chr3 84270472 84270664 -133766494 - MER3 DNA MER1_type -9 200 7 920 247 79 52 chr3 84271081 84271555 -133765603 - MLT1H LTR MaLR -4 545 4 383 237 110 25 chr3 84272425 84272543 -133764615 - L2 LINE L2 -7 3306 3179 252 186 102 0 chr3 84272545 84272604 -133764554 + LTR28 LTR ERV1 1 65 -955 2484 74 0 0 chr3 84274102 84274413 -133762745 - AluY SINE Alu 0 311 1 23 33 0 0 chr3 84275151 84275181 -133761977 + AT_rich Low_complexity Low_complexity 1 30 0 225 283 88 35 chr3 84276057 84276170 -133760988 - L2 LINE L2 -18 3254 3136 5919 118 5 5 chr3 84276713 84277609 -133759549 - L1P LINE L1 -1121 5025 4130 1558 104 16 12 chr3 84277607 84277858 -133759300 + L1P3 LINE L1 5352 5603 -551 * 373 181 5 75 chr3 84277974 84278162 -133758996 + C-rich Low_complexity Low_complexity 6 180 0 207 176 44 71 chr3 84278089 84278271 -133758887 + (CACAC)n Simple_repeat Simple_repeat 4 180 0 * 232 271 0 35 chr3 84278237 84278381 -133758777 + (CACCC)n Simple_repeat Simple_repeat 5 143 0 879 287 89 17 chr3 84278557 84279038 -133758120 + L1M4 LINE L1 2206 2721 -3425 230 306 14 14 chr3 84279281 84279463 -133757695 + T-rich Low_complexity Low_complexity 1 182 0 191 59 0 29 chr3 84280049 84280083 -133757075 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 201 94 0 0 chr3 84284315 84284347 -133752811 + (TCCA)n Simple_repeat Simple_repeat 4 35 0 31 0 0 0 chr3 84284363 84284394 -133752764 + AT_rich Low_complexity Low_complexity 1 31 0 458 245 123 57 chr3 84285716 84285928 -133751230 - MIR SINE MIR -7 255 30 197 299 30 30 chr3 84286239 84286306 -133750852 - MIR SINE MIR -86 122 56 369 0 0 0 chr3 84286648 84286689 -133750469 + (CA)n Simple_repeat Simple_repeat 1 41 0 410 210 250 0 chr3 84287294 84287418 -133749740 + MER58A DNA MER1_type 2 156 0 743 206 100 0 chr3 84287543 84287713 -133749445 + AluJo SINE Alu 122 308 -4 182 226 194 21 chr3 84287910 84288003 -133749155 + MIR3 SINE MIR 94 202 -6 468 51 0 0 chr3 84288043 84288102 -133749056 + (CA)n Simple_repeat Simple_repeat 1 59 0 2292 78 10 3 chr3 84288190 84288486 -133748672 - AluSq SINE Alu -15 298 1 1068 160 0 17 chr3 84289869 84290044 -133747114 + FRAM SINE Alu 1 172 -4 2099 124 3 10 chr3 84290052 84290366 -133746792 + AluSx SINE Alu 1 312 0 338 302 85 26 chr3 84290814 84291003 -133746155 + MIR SINE MIR 15 214 -48 221 234 0 0 chr3 84291039 84291086 -133746072 + (CTA)n Simple_repeat Simple_repeat 2 48 0 1988 144 23 3 chr3 84291105 84291411 -133745747 - AluJo SINE Alu 0 312 1 2238 102 3 7 chr3 84291415 84291710 -133745448 - AluSc SINE Alu -15 294 1 1333 148 5 45 chr3 84291740 84291878 -133745280 + AluSx SINE Alu 1 129 -183 2295 74 0 3 chr3 84291878 84292195 -133744963 + AluY SINE Alu 1 316 0 1333 148 5 45 chr3 84292195 84292278 -133744880 + AluSx SINE Alu 129 214 -98 22 0 0 0 chr3 84292287 84292309 -133744849 + AT_rich Low_complexity Low_complexity 1 22 0 1869 100 108 7 chr3 84292413 84292682 -133744476 - AluSx SINE Alu -10 302 7 271 279 48 48 chr3 84293004 84293151 -133744007 + L1ME4a LINE L1 5957 6103 -18 330 250 8 40 chr3 84294655 84294779 -133742379 - MIR SINE MIR -67 195 76 2471 73 3 10 chr3 84295030 84295343 -133741815 + AluY SINE Alu 1 311 0 234 0 0 0 chr3 84296921 84296947 -133740211 + (TG)n Simple_repeat Simple_repeat 1 26 0 33 0 0 0 chr3 84297196 84297229 -133739929 + GC_rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chr3 84297452 84297477 -133739681 + AT_rich Low_complexity Low_complexity 1 25 0 2480 67 3 13 chr3 84299626 84299941 -133737217 + AluSp SINE Alu 1 312 -1 2352 73 10 3 chr3 84300153 84300456 -133736702 - AluY SINE Alu -6 305 1 688 204 0 29 chr3 84300863 84301000 -133736158 + FLAM_A SINE Alu 1 133 0 532 176 30 53 chr3 84301573 84301704 -133735454 + L1ME4a LINE L1 5739 5866 -255 5902 128 61 41 chr3 84301889 84303004 -133734154 + pTR5 LTR ERV1 57 277 -437 356 190 64 82 chr3 84303004 84303115 -133734043 + LTR30 LTR ERV1 375 642 -80 2185 82 33 0 chr3 84303115 84303419 -133733739 + pTR5 LTR ERV1 79 392 -2046 1924 131 0 14 chr3 84303419 84303694 -133733464 + AluSx SINE Alu 31 301 -11 1783 179 3 6 chr3 84304479 84304792 -133732366 + AluJb SINE Alu 1 312 0 587 275 59 25 chr3 84305226 84305462 -133731696 + MIR SINE MIR 13 256 -6 2041 124 3 0 chr3 84305559 84305841 -133731317 + AluSc SINE Alu 1 283 -26 363 96 0 0 chr3 84306390 84306442 -133730716 + (A)n Simple_repeat Simple_repeat 1 52 0 2228 111 3 3 chr3 84307969 84308267 -133728891 - AluSc SINE Alu -11 298 1 21 0 0 0 chr3 84308972 84308993 -133728165 + AT_rich Low_complexity Low_complexity 1 21 0 183 156 0 0 chr3 84309466 84309498 -133727660 + T-rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr3 84309750 84309779 -133727379 + AT_rich Low_complexity Low_complexity 1 29 0 297 243 296 10 chr3 84310862 84311068 -133726090 + L2 LINE L2 1744 2008 -1306 200 311 52 15 chr3 84311723 84311858 -133725300 + L2 LINE L2 2920 3059 -213 201 74 0 0 chr3 84312433 84312460 -133724698 + (A)n Simple_repeat Simple_repeat 1 27 0 2207 107 10 13 chr3 84312928 84313237 -133723921 - AluSc SINE Alu -1 308 1 211 226 19 0 chr3 84313272 84313325 -133723833 + MIR SINE MIR 99 152 -110 1154 172 10 0 chr3 84313550 84313753 -133723405 - MER3 DNA MER1_type 0 209 5 430 261 44 56 chr3 84314167 84314290 -133722868 + MER5B DNA MER1_type 1 123 -55 2002 103 0 0 chr3 84314290 84314543 -133722615 - AluSg SINE Alu -14 296 44 430 261 44 56 chr3 84314543 84314599 -133722559 + MER5B DNA MER1_type 123 178 0 348 294 17 17 chr3 84315184 84315303 -133721855 + MIR3 SINE MIR 41 159 -49 38 61 0 0 chr3 84315354 84315420 -133721738 + AT_rich Low_complexity Low_complexity 1 66 0 4080 58 0 0 chr3 84315588 84316110 -133721048 + L1PA5 LINE L1 5647 6168 0 503 285 60 60 chr3 84316150 84316371 -133720787 - MER102b DNA MER1_type -1088 340 117 2272 114 0 0 chr3 84316371 84316670 -133720488 - AluSx SINE Alu -13 299 1 503 285 60 60 chr3 84316670 84316746 -133720412 - MER102b DNA MER1_type -1310 118 43 318 50 0 0 chr3 84316967 84317007 -133720151 + (TTA)n Simple_repeat Simple_repeat 2 41 0 698 191 40 0 chr3 84317015 84317141 -133720017 - FAM SINE Alu -34 151 21 497 273 53 7 chr3 84318268 84318418 -133718740 - MIR SINE MIR -105 157 1 410 180 0 52 chr3 84318617 84318705 -133718453 - AluSg/x SINE Alu -101 199 132 2492 70 0 0 chr3 84318705 84319004 -133718154 - AluSg SINE Alu -11 299 1 29 47 0 0 chr3 84319563 84319606 -133717552 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr3 84319650 84319678 -133717480 + AT_rich Low_complexity Low_complexity 1 28 0 2167 116 3 7 chr3 84320148 84320458 -133716700 + AluSg SINE Alu 1 309 -1 431 291 17 46 chr3 84320554 84320729 -133716429 + MIR SINE MIR 83 252 -10 2382 60 7 3 chr3 84321267 84321566 -133715592 - AluY SINE Alu -11 300 1 773 276 43 9 chr3 84322171 84322403 -133714755 + MIR SINE MIR 1 240 -22 228 111 0 0 chr3 84322695 84322731 -133714427 + (T)n Simple_repeat Simple_repeat 1 36 0 230 333 11 0 chr3 84323438 84323531 -133713627 + L2 LINE L2 2989 3082 -231 186 267 40 53 chr3 84323634 84323709 -133713449 + L2 LINE L2 3232 3305 -8 494 333 28 0 chr3 84324004 84324184 -133712974 + MIR SINE MIR 52 236 -26 1580 126 100 11 chr3 84324653 84324923 -133712235 - AluSg SINE Alu -16 294 1 461 298 60 68 chr3 84326251 84326452 -133710706 - MIR SINE MIR -29 233 33 2290 103 3 19 chr3 84326452 84326763 -133710395 - AluSx SINE Alu -6 306 1 461 298 60 68 chr3 84326763 84326796 -133710362 - MIR SINE MIR -229 33 1 507 278 70 98 chr3 84327632 84328114 -133709044 - MLT1K LTR MaLR -49 539 71 315 309 27 20 chr3 84329041 84329190 -133707968 + MIR SINE MIR 112 261 -1 275 282 4 12 chr3 84329365 84329623 -133707535 + C-rich Low_complexity Low_complexity 1 255 0 315 309 27 20 chr3 84330751 84330900 -133706258 + MIR SINE MIR 112 261 -1 208 343 14 0 chr3 84332004 84332101 -133705057 + (CATATA)n Simple_repeat Simple_repeat 1 98 0 381 43 0 0 chr3 84332110 84332157 -133705001 + (CA)n Simple_repeat Simple_repeat 1 47 0 1915 164 27 0 chr3 84332432 84332761 -133704397 + MER44D DNA MER2_type 1 608 -1 2172 108 7 0 chr3 84332764 84333059 -133704099 - AluSp SINE Alu -16 297 1 1690 89 47 13 chr3 84333621 84333857 -133703301 - AluSc SINE Alu -23 286 43 225 0 0 0 chr3 84334766 84334791 -133702367 + (T)n Simple_repeat Simple_repeat 1 25 0 387 60 0 0 chr3 84335209 84335259 -133701899 + (TG)n Simple_repeat Simple_repeat 2 51 0 2060 127 0 3 chr3 84335266 84335549 -133701609 - AluSc SINE Alu -27 282 1 1880 123 20 14 chr3 84335810 84336102 -133701056 - AluSx SINE Alu -18 294 1 1685 130 101 11 chr3 84336827 84337104 -133700054 + AluSx SINE Alu 2 303 -9 393 317 12 37 chr3 84337573 84337737 -133699421 - MIR SINE MIR -29 233 74 683 168 56 21 chr3 84337775 84337918 -133699240 + L1MD2 LINE L1 6196 6343 -16 401 97 65 0 chr3 84337955 84338017 -133699141 - Alu SINE Alu -4 298 233 1919 112 13 74 chr3 84337960 84338272 -133698886 - AluSx SINE Alu -19 293 1 1161 104 0 0 chr3 84338934 84339088 -133698070 - AluSx SINE Alu -3 307 154 621 99 0 0 chr3 84339091 84339172 -133697986 - AluSx SINE Alu -230 82 2 1964 201 93 35 chr3 84339173 84339724 -133697434 - L1M4 LINE L1 -3108 3038 2456 25 31 0 0 chr3 84339911 84339943 -133697215 + AT_rich Low_complexity Low_complexity 1 32 0 1782 98 102 8 chr3 84341944 84342210 -133694948 + AluY SINE Alu 1 291 -20 484 220 159 0 chr3 84343230 84343362 -133693796 + MER3 DNA MER1_type 35 187 -22 228 291 58 10 chr3 84343433 84343536 -133693622 - L1ME2 LINE L1 -98 6066 5959 2035 217 63 107 chr3 84343598 84344175 -133692983 - L1MC5 LINE L1 -405 7556 6955 1772 65 19 0 chr3 84344175 84344391 -133692767 + L1PA8 LINE L1 5945 6164 -8 2035 217 63 107 chr3 84344391 84344621 -133692537 - L1MC5 LINE L1 -1006 6955 6793 2170 116 6 22 chr3 84344621 84344939 -133692219 - AluSq SINE Alu 0 313 1 2035 217 63 107 chr3 84344939 84345057 -133692101 - L1MC5 LINE L1 -1168 6793 6671 306 310 26 26 chr3 84345073 84345186 -133691972 - L1MC4a LINE L1 -1219 6589 6477 1750 157 0 14 chr3 84345365 84345538 -133691620 - AluJo SINE Alu -19 293 124 207 0 0 0 chr3 84345538 84345561 -133691597 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1750 157 0 14 chr3 84345561 84345673 -133691485 - AluJo SINE Alu -188 124 12 463 262 42 21 chr3 84345849 84346040 -133691118 - HAL1b LINE L1 -714 634 440 319 302 28 44 chr3 84346050 84346232 -133690926 - HAL1b LINE L1 -1011 337 159 1925 122 44 7 chr3 84346239 84346535 -133690623 - AluSx SINE Alu -5 307 1 321 291 37 37 chr3 84347273 84347407 -133689751 + MIR SINE MIR 47 180 -82 471 18 0 0 chr3 84348981 84349037 -133688121 + (TG)n Simple_repeat Simple_repeat 1 56 0 229 258 15 30 chr3 84350298 84350364 -133686794 - L2 LINE L2 0 3272 3208 310 193 59 163 chr3 84351241 84351296 -133685862 + L2 LINE L2 3193 3252 -61 1845 149 0 32 chr3 84351296 84351611 -133685547 - AluJo SINE Alu -1 311 7 310 193 59 163 chr3 84351611 84351690 -133685468 + L2 LINE L2 3252 3313 0 801 248 0 0 chr3 84352754 84352915 -133684243 + AluJo SINE Alu 121 281 -31 1865 141 7 23 chr3 84352930 84353235 -133683923 + AluSx SINE Alu 1 300 -12 361 301 29 7 chr3 84353359 84353495 -133683663 + GA-rich Low_complexity Low_complexity 2 140 0 387 297 17 8 chr3 84353698 84353816 -133683342 - L2 LINE L2 -474 2840 2722 2024 96 37 0 chr3 84355168 84355462 -133681696 - AluSc SINE Alu 0 304 1 752 222 83 6 chr3 84356053 84356233 -133680925 + MER58A DNA MER1_type 30 223 -1 236 327 91 0 chr3 84356683 84356793 -133680365 + MIR SINE MIR 84 203 -59 409 80 0 0 chr3 84357041 84357091 -133680067 + FRAM/FAM SINE Alu 1 44 -132 1022 233 91 26 chr3 84357161 84357470 -133679688 - MLT1J2 LTR MaLR -121 329 1 22 0 0 0 chr3 84357633 84357655 -133679503 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr3 84357961 84358003 -133679155 + AT_rich Low_complexity Low_complexity 1 42 0 1811 177 0 0 chr3 84358396 84358684 -133678474 + AluJb SINE Alu 1 288 -24 2129 133 3 0 chr3 84358695 84359004 -133678154 + AluY SINE Alu 1 310 -1 2371 87 0 0 chr3 84361077 84361375 -133675783 + AluSg SINE Alu 1 298 -12 207 0 0 0 chr3 84362818 84362841 -133674317 + (T)n Simple_repeat Simple_repeat 1 23 0 197 219 0 16 chr3 84362887 84362951 -133674207 + (TA)n Simple_repeat Simple_repeat 2 64 0 272 271 0 8 chr3 84365579 84365701 -133671457 + CT-rich Low_complexity Low_complexity 3 123 0 201 171 0 0 chr3 84366922 84366957 -133670201 + T-rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr3 84369282 84369307 -133667851 + AT_rich Low_complexity Low_complexity 1 25 0 2390 91 0 0 chr3 84370366 84370675 -133666483 - AluSg SINE Alu -1 309 1 486 157 11 11 chr3 84370715 84370804 -133666354 - MER58B DNA MER1_type 0 341 253 2202 113 0 3 chr3 84370953 84371254 -133665904 + AluSx SINE Alu 1 300 -12 2275 180 46 10 chr3 84371784 84372201 -133664957 - MSTB1 LTR MaLR 0 432 1 258 247 31 62 chr3 84372885 84372982 -133664176 - MIR SINE MIR -88 174 81 294 184 51 64 chr3 84373801 84373941 -133663217 - MLT1J1 LTR MaLR -7 439 316 186 191 0 0 chr3 84374230 84374277 -133662881 + (CATA)n Simple_repeat Simple_repeat 1 47 0 361 322 0 0 chr3 84374309 84374399 -133662759 - L2 LINE L2 -50 3222 3133 1385 181 53 22 chr3 84374576 84374598 -133662560 - L1MB8 LINE L1 0 6178 6157 334 259 68 80 chr3 84374598 84374950 -133662208 - L1MC3 LINE L1 -1634 6151 5804 996 182 0 0 chr3 84375377 84375542 -133661616 - FAM SINE Alu -12 173 9 1989 156 0 10 chr3 84376237 84376551 -133660607 + AluSx SINE Alu 1 311 -1 293 258 71 100 chr3 84376768 84376867 -133660291 - MER112 DNA MER1_type -1 259 159 2290 92 20 0 chr3 84376867 84377160 -133659998 + AluSc SINE Alu 1 299 -10 293 258 71 100 chr3 84377160 84377300 -133659858 - MER112 DNA MER1_type -101 159 27 1881 243 83 120 chr3 84377313 84377372 -133659786 - L2 LINE L2 0 3313 3253 1334 182 104 14 chr3 84377372 84377669 -133659489 + MER33 DNA MER1_type 1 324 0 1881 243 83 120 chr3 84377669 84377949 -133659209 - L2 LINE L2 -60 3253 2964 1285 187 31 0 chr3 84377949 84378174 -133658984 - MER46A DNA MER2_type 0 236 5 1881 243 83 120 chr3 84378174 84378955 -133658203 - L2 LINE L2 -349 2964 2155 1619 166 0 22 chr3 84378955 84379232 -133657926 + AluJo SINE Alu 36 306 -6 1881 243 83 120 chr3 84379232 84379355 -133657803 - L2 LINE L2 -1158 2155 2029 1017 182 0 34 chr3 84379355 84379531 -133657627 + FAM SINE Alu 1 170 -5 2113 104 0 21 chr3 84379534 84379861 -133657297 + AluSg SINE Alu 1 321 0 1881 243 83 120 chr3 84379861 84379988 -133657170 - L2 LINE L2 -1286 2027 1867 352 117 0 17 chr3 84380701 84380761 -133656397 + AluS SINE Alu 1 59 -243 186 103 0 0 chr3 84381623 84381652 -133655506 + (TCTG)n Simple_repeat Simple_repeat 3 31 0 522 260 145 10 chr3 84384523 84384723 -133652435 + MER102b DNA MER1_type 72 298 -43 189 107 0 0 chr3 84385434 84385462 -133651696 + (T)n Simple_repeat Simple_repeat 1 28 0 2151 114 0 0 chr3 84385983 84386272 -133650886 + AluSx SINE Alu 9 297 -15 2433 62 0 3 chr3 84386276 84386568 -133650590 + AluY SINE Alu 1 291 -20 207 0 0 0 chr3 84386576 84386599 -133650559 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1769 170 0 17 chr3 84386774 84387074 -133650084 + AluJb SINE Alu 1 295 -17 188 224 20 20 chr3 84387668 84387717 -133649441 - L2 LINE L2 -16 3297 3249 1295 159 32 112 chr3 84389056 84389395 -133647763 - AluJb SINE Alu 0 312 1 230 321 29 71 chr3 84389816 84389956 -133647202 + L2 LINE L2 3137 3270 -2 2190 87 17 10 chr3 84391021 84391320 -133645838 + AluSq SINE Alu 11 311 -2 22 0 0 0 chr3 84391683 84391705 -133645453 + AT_rich Low_complexity Low_complexity 1 22 0 2151 116 10 0 chr3 84392126 84392420 -133644738 - AluSq SINE Alu -16 297 1 805 225 91 19 chr3 84392640 84392849 -133644309 + MER58A DNA MER1_type 1 224 0 2306 75 0 0 chr3 84392988 84393290 -133643868 - AluSc SINE Alu 0 302 1 2198 116 0 0 chr3 84394517 84394810 -133642348 - AluSx SINE Alu -19 293 1 336 262 16 48 chr3 84395354 84395480 -133641678 + L1ME4a LINE L1 5515 5636 -485 624 239 45 62 chr3 84395501 84395546 -133641612 - MER5A DNA MER1_type 0 189 145 2274 96 10 0 chr3 84395546 84395849 -133641309 - AluSp SINE Alu -6 307 2 624 239 45 62 chr3 84395849 84395979 -133641179 - MER5A DNA MER1_type -44 145 17 509 254 92 0 chr3 84395979 84396121 -133641037 + MIR SINE MIR 7 161 -101 2175 106 0 16 chr3 84396198 84396509 -133640649 - AluSx SINE Alu -6 306 1 205 194 0 0 chr3 84396523 84396559 -133640599 + (CAT)n Simple_repeat Simple_repeat 3 38 0 429 281 67 22 chr3 84396559 84396783 -133640375 + L1ME4a LINE L1 5638 5871 -250 1392 151 91 67 chr3 84396876 84397174 -133639984 + AluJb SINE Alu 1 305 -7 2183 151 94 40 chr3 84397278 84397828 -133639330 - pTR5 LTR ERV1 -1116 1322 743 575 214 0 23 chr3 84398014 84398145 -133639013 - L1ME4a LINE L1 -255 5866 5739 244 284 7 50 chr3 84398786 84399041 -133638117 + A-rich Low_complexity Low_complexity 1 243 0 387 306 0 40 chr3 84399206 84399330 -133637828 - MIR SINE MIR -143 119 1 336 263 171 66 chr3 84400060 84400364 -133636794 + MLT1J LTR MaLR 16 351 -160 197 191 0 79 chr3 84401064 84401127 -133636031 - MIR SINE MIR -46 216 159 1039 264 18 0 chr3 84401253 84401473 -133635685 + MER58A DNA MER1_type 1 224 0 1193 167 105 19 chr3 84402100 84402358 -133634800 - AluJb SINE Alu -7 305 26 2083 96 0 14 chr3 84402358 84402649 -133634509 - AluY SINE Alu -24 287 1 2384 48 7 3 chr3 84402838 84403129 -133634029 - AluY SINE Alu -16 295 4 22 0 0 0 chr3 84403144 84403166 -133633992 + AT_rich Low_complexity Low_complexity 1 22 0 1933 175 42 0 chr3 84403170 84403501 -133633657 - L1PA16 LINE L1 -16 6150 5806 222 62 0 0 chr3 84403705 84403737 -133633421 + (TG)n Simple_repeat Simple_repeat 2 33 0 2063 124 0 10 chr3 84405619 84405910 -133631248 + AluSx SINE Alu 1 288 -24 1193 167 105 19 chr3 84405910 84406168 -133630990 + AluJb SINE Alu 26 305 -7 1088 254 18 0 chr3 84406796 84407016 -133630142 - MER58A DNA MER1_type 0 224 1 197 191 0 79 chr3 84407142 84407205 -133629953 + MIR SINE MIR 159 216 -46 336 263 171 66 chr3 84407905 84408209 -133628949 - MLT1J LTR MaLR -160 351 16 288 216 27 27 chr3 84409011 84409122 -133628036 + T-rich Low_complexity Low_complexity 6 116 0 484 220 159 0 chr3 84409554 84409686 -133627472 + MER3 DNA MER1_type 35 187 -22 228 291 58 10 chr3 84409757 84409860 -133627298 - L1ME2 LINE L1 -98 6066 5959 2079 217 63 102 chr3 84409922 84410499 -133626659 - L1MC5 LINE L1 -405 7556 6958 1836 59 18 0 chr3 84410499 84410720 -133626438 + L1PA8 LINE L1 5945 6169 -3 2079 217 63 102 chr3 84410720 84410945 -133626213 - L1MC5 LINE L1 -1003 6958 6792 2170 116 6 22 chr3 84410945 84411263 -133625895 - AluSq SINE Alu 0 313 1 2079 217 63 102 chr3 84411263 84411381 -133625777 - L1MC5 LINE L1 -1169 6792 6671 306 310 26 26 chr3 84411397 84411510 -133625648 - L1MC4a LINE L1 -1219 6589 6477 1750 157 0 14 chr3 84411689 84411862 -133625296 - AluJo SINE Alu -19 293 124 207 0 0 0 chr3 84411862 84411885 -133625273 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1750 157 0 14 chr3 84411885 84411997 -133625161 - AluJo SINE Alu -188 124 12 463 262 42 21 chr3 84412173 84412364 -133624794 - HAL1b LINE L1 -714 634 440 319 302 28 44 chr3 84412374 84412556 -133624602 - HAL1b LINE L1 -1011 337 159 1577 123 52 8 chr3 84412563 84412815 -133624343 - AluSg SINE Alu -4 306 44 386 294 17 17 chr3 84413456 84413575 -133623583 + MIR3 SINE MIR 41 159 -49 38 61 0 0 chr3 84413626 84413692 -133623466 + AT_rich Low_complexity Low_complexity 1 66 0 4262 57 10 2 chr3 84413856 84414367 -133622791 + L1PA5 LINE L1 5640 6154 0 467 284 60 63 chr3 84414417 84414639 -133622519 - MER102a DNA MER1_type -1088 329 107 2255 114 0 0 chr3 84414639 84414938 -133622220 - AluSx SINE Alu -13 299 1 467 284 60 63 chr3 84414938 84415014 -133622144 - MER102a DNA MER1_type -1310 107 32 264 59 0 0 chr3 84415235 84415269 -133621889 + (TTA)n Simple_repeat Simple_repeat 2 35 0 762 231 34 7 chr3 84415277 84415424 -133621734 - FAM SINE Alu -34 151 1 219 69 0 0 chr3 84416006 84416035 -133621123 + (CAA)n Simple_repeat Simple_repeat 2 30 0 543 273 53 7 chr3 84416532 84416682 -133620476 - MIR SINE MIR -105 157 1 396 0 0 0 chr3 84417013 84417057 -133620101 + (TG)n Simple_repeat Simple_repeat 2 45 0 917 147 13 32 chr3 84417057 84417207 -133619951 - AluSg/x SINE Alu -32 280 134 2480 67 3 0 chr3 84417207 84417506 -133619652 - AluY SINE Alu -11 300 1 783 160 56 0 chr3 84417974 84418099 -133619059 + AluSq/x SINE Alu 2 133 -180 25 0 0 0 chr3 84418099 84418124 -133619034 + AT_rich Low_complexity Low_complexity 1 25 0 1065 92 0 0 chr3 84418510 84418641 -133618517 + AluSp SINE Alu 1 131 -182 513 201 14 50 chr3 84418870 84419037 -133618121 + AluJb SINE Alu 158 312 0 388 281 72 7 chr3 84419040 84419179 -133617979 + MIR SINE MIR 83 230 -32 459 35 0 0 chr3 84420263 84420320 -133616838 + (TG)n Simple_repeat Simple_repeat 1 57 0 2216 73 0 28 chr3 84420320 84420606 -133616552 - AluY SINE Alu -33 278 1 336 252 46 53 chr3 84420711 84420842 -133616316 + MIR3 SINE MIR 5 134 -74 401 188 11 11 chr3 84422100 84422276 -133614882 + (CA)n Simple_repeat Simple_repeat 2 177 0 216 163 0 0 chr3 84422395 84422438 -133614720 + (CA)n Simple_repeat Simple_repeat 1 43 0 265 281 64 23 chr3 84422506 84422677 -133614481 - L1MC4 LINE L1 -1 8041 7864 * 445 218 49 28 chr3 84422669 84422811 -133614347 + L1ME4a LINE L1 5860 6004 -117 340 267 19 9 chr3 84424459 84424564 -133612594 - MIR3 SINE MIR -5 203 98 1769 172 0 30 chr3 84425239 84425533 -133611625 + AluJo SINE Alu 1 287 -25 420 20 0 0 chr3 84425533 84425582 -133611576 + (CA)n Simple_repeat Simple_repeat 2 50 0 467 265 66 67 chr3 84425598 84426005 -133611153 - L2 LINE L2 -208 3064 2652 318 67 0 0 chr3 84427089 84427134 -133610024 + (TG)n Simple_repeat Simple_repeat 2 46 0 443 212 168 9 chr3 84427824 84427937 -133609221 + FLAM_A SINE Alu 1 131 -2 2166 122 3 6 chr3 84427937 84428249 -133608909 + AluSx SINE Alu 1 311 -1 331 227 13 0 chr3 84428655 84428730 -133608428 - MER113 DNA MER1_type? 0 521 446 201 195 0 0 chr3 84428730 84428771 -133608387 + (CATATA)n Simple_repeat Simple_repeat 4 44 0 2065 89 69 7 chr3 84428791 84429082 -133608076 - AluSq SINE Alu -4 309 1 335 180 62 113 chr3 84429084 84429278 -133607880 - MER113 DNA MER1_type? -305 216 33 250 137 0 78 chr3 84429398 84429449 -133607709 + MIR SINE MIR 100 146 -62 277 232 12 24 chr3 84429505 84429587 -133607571 + (CATATA)n Simple_repeat Simple_repeat 3 83 0 1299 163 34 0 chr3 84429690 84429899 -133607259 - AluJo SINE Alu -10 302 87 581 174 16 8 chr3 84431349 84431466 -133605692 - MER5A DNA MER1_type -62 116 3 264 122 0 0 chr3 84432145 84432186 -133604972 + (TA)n Simple_repeat Simple_repeat 2 42 0 230 328 0 0 chr3 84432514 84432572 -133604586 - L2 LINE L2 -9 3263 3206 293 284 0 34 chr3 84432964 84433052 -133604106 + GA-rich Low_complexity Low_complexity 4 88 0 349 287 0 20 chr3 84434215 84434316 -133602842 + (TATATG)n Simple_repeat Simple_repeat 3 101 0 2067 116 3 3 chr3 84435421 84435714 -133601444 - AluSx SINE Alu -19 293 1 1995 141 0 0 chr3 84437230 84437514 -133599644 + AluJb SINE Alu 1 284 -28 1792 178 0 7 chr3 84438628 84438931 -133598227 + AluJb SINE Alu 6 306 -6 2479 80 6 0 chr3 84439171 84439482 -133597676 - AluSp SINE Alu 0 313 1 283 289 37 37 chr3 84440218 84440353 -133596805 + MIR SINE MIR 46 180 -82 282 318 126 14 chr3 84440429 84440652 -133596506 - MIR SINE MIR 0 262 15 510 235 36 72 chr3 84440668 84440772 -133596386 + MER5B DNA MER1_type 19 117 -61 1969 82 25 11 chr3 84440772 84441080 -133596078 - AluSq SINE Alu 0 312 1 510 235 36 72 chr3 84441080 84441140 -133596018 + MER5B DNA MER1_type 117 178 0 1042 215 124 66 chr3 84441182 84441448 -133595710 - MLT1D LTR MaLR 0 505 256 183 80 0 0 chr3 84441448 84441473 -133595685 + (TA)n Simple_repeat Simple_repeat 2 26 0 1042 215 124 66 chr3 84441473 84441812 -133595346 - MLT1D LTR MaLR -249 256 1 225 372 0 0 chr3 84441928 84442014 -133595144 + L2 LINE L2 3186 3271 -1 186 43 0 0 chr3 84442705 84442728 -133594430 + (TG)n Simple_repeat Simple_repeat 2 24 0 662 291 158 9 chr3 84444125 84444472 -133592686 + L2 LINE L2 2915 3313 0 279 341 0 0 chr3 84444720 84444802 -133592356 + MIR SINE MIR 6 87 -175 1422 146 13 13 chr3 84444804 84445037 -133592121 + AluJb SINE Alu 25 257 -55 1541 173 14 7 chr3 84445325 84445603 -133591555 + AluJo SINE Alu 17 296 -16 389 262 62 50 chr3 84446117 84446336 -133590822 + MIR SINE MIR 9 227 -35 2325 103 3 3 chr3 84446339 84446641 -133590517 + AluSp SINE Alu 1 302 -11 306 0 0 0 chr3 84447532 84447566 -133589592 + (TG)n Simple_repeat Simple_repeat 2 35 0 457 167 30 15 chr3 84448041 84448173 -133588985 + GA-rich Low_complexity Low_complexity 4 137 0 299 258 28 28 chr3 84448360 84448538 -133588620 + (CAAA)n Simple_repeat Simple_repeat 1 178 0 680 182 105 28 chr3 84449668 84449849 -133587309 - MER20 DNA MER1_type 0 219 25 253 91 0 68 chr3 84450192 84450263 -133586895 - Alu SINE Alu 0 302 252 222 62 0 0 chr3 84450815 84450847 -133586311 + (A)n Simple_repeat Simple_repeat 1 32 0 292 353 138 18 chr3 84451867 84452085 -133585073 + MIR SINE MIR 15 258 -4 29 0 0 0 chr3 84452728 84452757 -133584401 + AT_rich Low_complexity Low_complexity 1 29 0 1216 218 111 7 chr3 84452847 84453154 -133584004 - MER58B DNA MER1_type 0 341 3 1757 148 3 33 chr3 84453464 84453768 -133583390 + AluJo SINE Alu 1 295 -17 21 0 0 0 chr3 84453866 84453887 -133583271 + AT_rich Low_complexity Low_complexity 1 21 0 280 292 82 59 chr3 84454520 84454739 -133582419 + L1MC/D LINE L1 5422 5645 -2163 1638 195 22 0 chr3 84454754 84455070 -133582088 + AluJb SINE Alu 1 322 0 357 288 9 9 chr3 84456283 84456394 -133580764 + MIR SINE MIR 34 144 -118 316 57 0 38 chr3 84457282 84457335 -133579823 + (GAAAA)n Simple_repeat Simple_repeat 2 52 0 1979 120 25 0 chr3 84457518 84457818 -133579340 + AluSg SINE Alu 1 307 0 180 324 0 0 chr3 84457847 84457915 -133579243 + MIR SINE MIR 171 238 -24 444 330 88 7 chr3 84458248 84458521 -133578637 + L3 LINE CR1 1179 1473 -104 813 215 81 14 chr3 84458793 84459002 -133578156 - MIR SINE MIR -26 236 14 2102 123 30 3 chr3 84460646 84460946 -133576212 - AluSx SINE Alu -4 308 1 2275 105 0 0 chr3 84462202 84462506 -133574652 - AluSg1 SINE Alu -5 304 1 502 186 0 0 chr3 84462506 84462592 -133574566 - AluJ/FRAM SINE Alu -3 309 224 2056 133 3 16 chr3 84463288 84463604 -133573554 + AluSx SINE Alu 1 312 0 1028 143 7 0 chr3 84463608 84463762 -133573396 + AluSg/x SINE Alu 121 275 -37 248 0 31 0 chr3 84463765 84463797 -133573361 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 2062 78 0 4 chr3 84463842 84464098 -133573060 + AluY SINE Alu 50 304 -7 281 335 140 0 chr3 84467624 84467803 -133569355 - MIR SINE MIR 0 262 59 254 265 272 14 chr3 84469698 84469845 -133567313 - MER5A DNA MER1_type 0 189 5 604 294 35 20 chr3 84471257 84471458 -133565700 - MER102a DNA MER1_type 0 330 127 708 239 77 0 chr3 84474989 84475144 -133562014 - MER96 DNA MER1_type? -8 167 1 329 266 70 21 chr3 84475743 84475886 -133561272 - MIR SINE MIR -103 159 10 382 243 60 106 chr3 84477221 84477456 -133559702 + MER102b DNA MER1_type 115 338 -3 447 19 0 0 chr3 84478269 84478321 -133558837 + (CTCA)n Simple_repeat Simple_repeat 4 55 0 2240 87 7 7 chr3 84478370 84478668 -133558490 + AluSq SINE Alu 1 298 -15 267 267 50 20 chr3 84478993 84479094 -133558064 + MER91C DNA MER1_type 37 140 0 240 306 67 53 chr3 84479106 84479315 -133557843 + MIR SINE MIR 48 259 -3 424 237 8 46 chr3 84480665 84480796 -133556362 + MER5A DNA MER1_type 40 165 -24 323 164 0 16 chr3 84480827 84480888 -133556270 - MER5A DNA MER1_type 0 189 130 1261 144 5 0 chr3 84480896 84481098 -133556060 + L1MA6 LINE L1 6036 6238 -62 189 107 0 0 chr3 84481789 84481817 -133555341 + (A)n Simple_repeat Simple_repeat 1 28 0 2144 116 10 13 chr3 84482281 84482591 -133554567 - AluSc SINE Alu 0 309 1 211 226 19 0 chr3 84482626 84482679 -133554479 + MIR SINE MIR 99 152 -110 1154 172 10 0 chr3 84482905 84483108 -133554050 - MER3 DNA MER1_type 0 209 5 277 307 39 24 chr3 84483522 84483649 -133553509 + MER5B DNA MER1_type 1 129 -49 2085 128 0 0 chr3 84483661 84483943 -133553215 - AluSx SINE Alu -30 282 1 1485 151 4 8 chr3 84483964 84484216 -133552942 - AluJb SINE Alu -26 286 36 321 276 113 35 chr3 84484300 84484503 -133552655 - L1ME4a LINE L1 -210 5911 5693 207 0 0 0 chr3 84484721 84484744 -133552414 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 553 150 0 0 chr3 84485204 84485284 -133551874 + Tigger3(Golem) DNA MER2_type 1 80 -2949 545 196 59 0 chr3 84485404 84485506 -133551652 + Tigger3(Golem) DNA MER2_type 2920 3027 -2 205 291 51 26 chr3 84485510 84485627 -133551531 - MIR3 SINE MIR -3 205 86 240 274 14 14 chr3 84485932 84486005 -133551153 + CT-rich Low_complexity Low_complexity 2 74 0 579 293 138 31 chr3 84486466 84486863 -133550295 - L1ME4a LINE L1 -2 6119 5645 1788 170 17 0 chr3 84486863 84487157 -133550001 - AluJb SINE Alu -12 300 2 579 293 138 31 chr3 84487157 84487308 -133549850 - L1ME4a LINE L1 -476 5645 5512 26 0 0 0 chr3 84487370 84487396 -133549762 + AT_rich Low_complexity Low_complexity 1 26 0 233 223 10 126 chr3 84487603 84487706 -133549452 - L2 LINE L2 0 3313 3223 265 242 0 15 chr3 84488637 84488703 -133548455 + MIR SINE MIR 120 184 -78 507 321 29 24 chr3 84488743 84488952 -133548206 + MIR SINE MIR 47 256 -6 31 88 0 0 chr3 84489015 84489095 -133548063 + AT_rich Low_complexity Low_complexity 1 80 0 1698 128 59 52 chr3 84489333 84489623 -133547535 - AluSx SINE Alu -20 292 1 1159 140 8 117 chr3 84490179 84490436 -133546722 - AluJo SINE Alu 0 312 84 598 228 115 48 chr3 84490699 84490816 -133546342 + MER33 DNA MER1_type 1 88 -2497 2359 95 0 10 chr3 84490816 84491122 -133546036 + AluSx SINE Alu 1 303 -9 598 228 115 48 chr3 84491122 84491294 -133545864 + MER33 DNA MER1_type 88 299 -2286 2407 90 0 0 chr3 84491294 84491593 -133545565 - AluY SINE Alu -12 299 1 598 228 115 48 chr3 84491593 84491616 -133545542 + MER33 DNA MER1_type 299 319 -5 713 219 13 75 chr3 84491864 84492092 -133545066 - MER20 DNA MER1_type -4 215 2 2084 103 72 3 chr3 84492233 84492524 -133544634 - AluSq SINE Alu -2 311 1 2033 138 3 0 chr3 84492635 84492931 -133544227 - AluSg SINE Alu -13 297 1 258 253 40 0 chr3 84493208 84493283 -133543875 - MIR SINE MIR -15 247 170 183 42 0 0 chr3 84493603 84493627 -133543531 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 343 365 52 10 chr3 84493655 84493847 -133543311 - L2 LINE L2 -261 3052 2853 2853 138 38 45 chr3 84493962 84494173 -133542985 + L1MA5A LINE L1 5746 5957 -340 2494 73 0 0 chr3 84494173 84494474 -133542684 + AluY SINE Alu 1 301 -10 2853 138 38 45 chr3 84494474 84494818 -133542340 + L1MA5A LINE L1 5957 6297 0 235 346 0 9 chr3 84494828 84494935 -133542223 - L2 LINE L2 -774 2540 2435 219 36 0 0 chr3 84495560 84495588 -133541570 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 244 237 85 104 chr3 84496045 84496256 -133540902 + L1MC/D LINE L1 5671 5877 -1931 366 231 10 39 chr3 84496798 84496902 -133540256 - MLT1K LTR MaLR -13 575 475 200 247 39 91 chr3 84497351 84497505 -133539653 - L2 LINE L2 -192 3080 2935 2082 126 3 3 chr3 84500188 84500482 -133536676 - AluSx SINE Alu -18 294 1 192 226 87 87 chr3 84502578 84502693 -133534465 - L3 LINE CR1 -919 658 544 1549 44 0 0 chr3 84503163 84503343 -133533815 + AluY SINE Alu 130 309 -2 24 0 0 0 chr3 84506387 84506411 -133530747 + AT_rich Low_complexity Low_complexity 1 24 0 415 266 95 19 chr3 84508906 84509064 -133528094 + MER117 DNA MER1_type 2 171 -26 1545 186 79 7 chr3 84509277 84509567 -133527591 + AluJb SINE Alu 1 311 -1 291 140 0 0 chr3 84509596 84509646 -133527512 + (CTA)n Simple_repeat Simple_repeat 1 50 0 1049 144 29 17 chr3 84509651 84509824 -133527334 + AluJo SINE Alu 124 298 -14 434 136 12 0 chr3 84509865 84509946 -133527212 + G-rich Low_complexity Low_complexity 2 83 0 1559 136 51 51 chr3 84510075 84510348 -133526810 - AluSq SINE Alu -1 312 40 23 33 0 0 chr3 84510805 84510835 -133526323 + AT_rich Low_complexity Low_complexity 1 30 0 2304 109 0 0 chr3 84512225 84512527 -133524631 - AluY SINE Alu -9 302 1 1135 184 9 96 chr3 84513192 84513249 -133523909 - MER33 DNA MER1_type -2286 299 239 1767 175 6 16 chr3 84513249 84513564 -133523594 + AluJo SINE Alu 1 312 0 1135 184 9 96 chr3 84513564 84513613 -133523545 - MER33 DNA MER1_type -2346 239 187 2444 101 0 0 chr3 84513613 84513921 -133523237 + AluSg SINE Alu 1 308 -2 1135 184 9 96 chr3 84513921 84514157 -133523001 - MER33 DNA MER1_type -2398 187 1 357 305 99 27 chr3 84514829 84515052 -133522106 + MIR SINE MIR 12 250 -12 295 279 125 10 chr3 84515624 84515728 -133521430 - L2 LINE L2 -5 3308 3193 2280 104 0 7 chr3 84515916 84516225 -133520933 + AluSg SINE Alu 3 309 -1 2332 73 7 10 chr3 84517195 84517495 -133519663 - AluY SINE Alu -12 299 1 2159 92 0 7 chr3 84517580 84517901 -133519257 + AluSg SINE Alu 2 320 0 204 200 0 0 chr3 84521148 84521193 -133515965 + A-rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr3 84522513 84522534 -133514624 + AT_rich Low_complexity Low_complexity 1 21 0 1398 248 116 34 chr3 84524283 84524811 -133512347 + MLT1K LTR MaLR 2 572 -16 2302 87 3 0 chr3 84525106 84525404 -133511754 + AluSg SINE Alu 1 299 -11 431 291 17 46 chr3 84525942 84526117 -133511041 - MIR SINE MIR -10 252 83 2087 132 3 3 chr3 84526213 84526523 -133510635 - AluY SINE Alu -1 310 1 215 301 91 42 chr3 84527035 84527178 -133509980 + L2 LINE L2 2942 3091 -181 598 276 27 54 chr3 84527365 84527626 -133509532 - MIR SINE MIR 0 262 9 2193 110 0 29 chr3 84527783 84528092 -133509066 - AluSq SINE Alu -13 300 1 2313 108 3 0 chr3 84528705 84529010 -133508148 + AluY SINE Alu 1 306 -5 269 250 60 83 chr3 84529175 84529343 -133507815 - L3 LINE CR1 -829 748 585 25 31 0 0 chr3 84529609 84529641 -133507517 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr3 84531697 84531719 -133505439 + AT_rich Low_complexity Low_complexity 1 22 0 485 292 7 7 chr3 84531937 84532081 -133505077 - MIR SINE MIR -59 203 60 276 335 51 6 chr3 84532639 84532797 -133504361 + MIR SINE MIR 79 243 -19 339 284 99 77 chr3 84532998 84533395 -133503763 - MLT1L LTR MaLR -35 580 72 22 35 0 0 chr3 84534346 84534375 -133502783 + AT_rich Low_complexity Low_complexity 1 29 0 2360 88 3 7 chr3 84534430 84534735 -133502423 - AluSx SINE Alu -4 308 5 1188 161 29 10 chr3 84534893 84535098 -133502060 - MER3 DNA MER1_type 0 209 1 781 213 71 38 chr3 84535107 84535318 -133501840 + MER20 DNA MER1_type 2 219 0 202 277 0 0 chr3 84535587 84535634 -133501524 + CT-rich Low_complexity Low_complexity 1 47 0 711 265 46 14 chr3 84535807 84536026 -133501132 + MIR SINE MIR 37 262 0 2131 85 30 20 chr3 84536631 84536926 -133500232 - AluSg SINE Alu -12 298 1 2153 107 10 10 chr3 84537048 84537346 -133499812 - AluSx SINE Alu -14 298 1 2019 127 0 44 chr3 84537382 84537697 -133499461 + AluSx SINE Alu 1 301 -11 2436 77 3 19 chr3 84537734 84538044 -133499114 + AluSg SINE Alu 1 305 -5 374 279 73 15 chr3 84538285 84538421 -133498737 - MIR SINE MIR -109 153 10 1867 77 4 8 chr3 84539302 84539536 -133497622 + AluSx SINE Alu 1 233 -79 210 200 14 14 chr3 84539688 84539758 -133497400 + (TA)n Simple_repeat Simple_repeat 2 71 0 280 194 48 0 chr3 84540490 84540552 -133496606 - MIR SINE MIR -95 167 103 509 0 16 0 chr3 84541869 84541930 -133495228 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 318 26 0 0 chr3 84546477 84546516 -133490642 + (TG)n Simple_repeat Simple_repeat 2 40 0 1923 153 3 3 chr3 84549153 84549454 -133487704 - AluSx SINE Alu -11 301 1 1179 223 70 35 chr3 84549734 84550134 -133487024 + MER113 DNA MER1_type? 5 418 -103 216 0 0 0 chr3 84550898 84550922 -133486236 + (TA)n Simple_repeat Simple_repeat 2 25 0 2348 95 0 3 chr3 84551483 84551788 -133485370 + AluSg SINE Alu 1 304 -6 566 235 168 7 chr3 84552915 84553064 -133484094 + MER5A DNA MER1_type 11 183 -6 222 273 91 30 chr3 84553083 84553182 -133483976 + MIR SINE MIR 37 141 -121 339 281 24 43 chr3 84553247 84553411 -133483747 - L2 LINE L2 -37 3276 3116 189 267 0 0 chr3 84553450 84553495 -133483663 + MIR SINE MIR 218 262 0 870 206 14 41 chr3 84554751 84554970 -133482188 + MER20 DNA MER1_type 1 213 -6 2206 115 0 0 chr3 84555033 84555321 -133481837 - AluSx SINE Alu -24 288 1 533 309 53 70 chr3 84556238 84556515 -133480643 + L2 LINE L2 1897 2164 -1150 918 209 26 57 chr3 84556515 84556745 -133480413 - MER58A DNA MER1_type 0 224 2 533 309 53 70 chr3 84556745 84556936 -133480222 + L2 LINE L2 2164 2357 -957 542 199 0 53 chr3 84557269 84557400 -133479758 + Charlie5 DNA MER1_type 1 124 -2488 1545 175 94 14 chr3 84557402 84557762 -133479396 + Charlie5 DNA MER1_type 2236 2624 0 222 37 0 0 chr3 84558177 84558204 -133478954 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 1731 160 0 18 chr3 84558430 84558759 -133478399 + AluJb SINE Alu 13 336 0 1536 143 200 4 chr3 84559016 84559296 -133477862 + MER1B DNA MER1_type 3 337 0 2202 88 0 0 chr3 84559841 84560115 -133477043 + AluSc SINE Alu 3 276 -33 219 36 0 0 chr3 84560117 84560145 -133477013 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2064 96 0 0 chr3 84560378 84560649 -133476509 - AluSx SINE Alu -5 307 37 201 351 99 20 chr3 84561156 84561358 -133475800 + L2 LINE L2 2815 3032 -240 2369 96 3 0 chr3 84561381 84561684 -133475474 + AluY SINE Alu 1 304 -7 191 368 26 0 chr3 84561795 84561871 -133475287 + L2 LINE L2 3236 3313 0 266 164 200 0 chr3 84562607 84562662 -133474496 + L2 LINE L2 3248 3313 0 180 179 0 0 chr3 84562911 84562950 -133474208 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 281 100 20 0 chr3 84564515 84564565 -133472593 + (TC)n Simple_repeat Simple_repeat 2 52 0 243 294 0 39 chr3 84564567 84564720 -133472438 + CT-rich Low_complexity Low_complexity 3 149 0 2223 124 0 0 chr3 84566252 84566550 -133470608 - AluSx SINE Alu -14 298 1 342 0 0 0 chr3 84567129 84567167 -133469991 + (CA)n Simple_repeat Simple_repeat 2 39 0 1918 172 46 9 chr3 84567373 84567721 -133469437 + L1PA16 LINE L1 5806 6166 0 2172 116 0 28 chr3 84567742 84568060 -133469098 + AluSx SINE Alu 1 309 -3 652 297 52 22 chr3 84569272 84569504 -133467654 + MIR SINE MIR 24 262 0 1706 182 0 23 chr3 84570243 84570550 -133466608 + AluJb SINE Alu 1 300 -12 2492 81 3 0 chr3 84571991 84572300 -133464858 - AluSg SINE Alu 0 310 1 29 47 0 0 chr3 84572859 84572902 -133464256 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr3 84572946 84572974 -133464184 + AT_rich Low_complexity Low_complexity 1 28 0 2034 122 0 20 chr3 84573444 84573748 -133463410 + AluSg SINE Alu 1 298 -12 250 44 22 22 chr3 84574438 84574483 -133462675 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 2035 121 0 7 chr3 84574483 84574765 -133462393 - AluSx SINE Alu -32 280 1 329 246 0 116 chr3 84574986 84575124 -133462034 + MLT1J1 LTR MaLR 41 162 -284 1794 114 16 36 chr3 84575448 84575755 -133461403 + AluSg SINE Alu 1 301 -9 2255 100 0 0 chr3 84575757 84576036 -133461122 - AluSg SINE Alu -30 280 2 215 309 71 32 chr3 84576150 84576276 -133460882 - L2 LINE L2 -12 3301 3171 777 166 10 116 chr3 84577056 84577133 -133460025 - MER5A DNA MER1_type -6 183 99 1711 125 84 30 chr3 84577133 84577429 -133459729 - AluSx SINE Alu 0 312 1 777 166 10 116 chr3 84577429 84577550 -133459608 - MER5A DNA MER1_type -90 99 6 1180 234 3 25 chr3 84577848 84578134 -133459024 + AluJo SINE Alu 1 280 -32 343 288 38 124 chr3 84578159 84578350 -133458808 + L2 LINE L2 2813 3019 -294 2164 120 0 28 chr3 84578350 84578667 -133458491 - AluSx SINE Alu -4 308 1 343 288 38 124 chr3 84578667 84579023 -133458135 + L2 LINE L2 3019 3313 0 298 274 92 67 chr3 84579941 84580105 -133457053 + MIR3 SINE MIR 38 205 -3 2097 133 3 10 chr3 84580664 84580972 -133456186 + AluSx SINE Alu 1 306 -6 209 303 101 10 chr3 84582548 84582647 -133454511 - MIR SINE MIR -71 191 84 465 277 38 19 chr3 84583839 84583998 -133453160 - MIR SINE MIR -95 167 6 2477 171 30 111 chr3 84584684 84585281 -133451877 + MER44D DNA MER2_type 1 604 -1 1159 237 55 41 chr3 84585625 84585861 -133451297 - MER113 DNA MER1_type? -44 477 231 1660 229 6 17 chr3 84585861 84586206 -133450952 + MER58B DNA MER1_type 1 341 0 1159 237 55 41 chr3 84586206 84586387 -133450771 - MER113 DNA MER1_type? -290 231 54 189 0 0 0 chr3 84587057 84587078 -133450080 + (T)n Simple_repeat Simple_repeat 1 21 0 2273 72 41 0 chr3 84587505 84587796 -133449362 - AluY SINE Alu -8 303 1 2002 154 0 3 chr3 84587796 84588102 -133449056 - AluJo SINE Alu -7 305 1 1463 185 18 11 chr3 84588362 84588643 -133448515 + AluJo SINE Alu 15 297 -15 455 320 78 42 chr3 84588752 84589058 -133448100 + MLT1K LTR MaLR 104 420 -168 1846 109 25 11 chr3 84590297 84590573 -133446585 + AluSx SINE Alu 4 283 -29 336 24 0 0 chr3 84590576 84590617 -133446541 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 228 231 0 0 chr3 84591986 84592064 -133445094 + (TATATG)n Simple_repeat Simple_repeat 6 83 0 308 326 27 76 chr3 84592682 84592819 -133444339 + MIR SINE MIR 29 152 -110 2254 107 0 7 chr3 84592819 84593118 -133444040 + AluSc SINE Alu 7 303 -6 308 326 27 76 chr3 84593118 84593204 -133443954 + MIR SINE MIR 152 241 -21 24 0 0 0 chr3 84593216 84593240 -133443918 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr3 84595841 84595866 -133441292 + AT_rich Low_complexity Low_complexity 1 25 0 977 128 0 0 chr3 84600212 84600345 -133436813 - FLAM_C SINE Alu -10 133 1 2544 65 3 0 chr3 84601169 84601476 -133435682 + AluSp SINE Alu 1 308 -5 1196 283 66 14 chr3 84601692 84602116 -133435042 + L2 LINE L2 2868 3313 0 22 0 0 0 chr3 84602246 84602268 -133434890 + AT_rich Low_complexity Low_complexity 1 22 0 534 201 158 14 chr3 84602722 84602861 -133434297 - MIR SINE MIR -88 174 16 874 219 6 22 chr3 84602985 84603163 -133433995 - MER45A DNA AcHobo -3 175 1 285 146 0 0 chr3 84603254 84603302 -133433856 + (TA)n Simple_repeat Simple_repeat 2 49 0 233 119 0 0 chr3 84603302 84603344 -133433814 - LTR66 LTR ERVL -171 439 398 249 119 0 0 chr3 84603723 84603765 -133433393 + (CA)n Simple_repeat Simple_repeat 2 43 0 623 240 8 0 chr3 84604842 84604963 -133432195 - FLAM_A SINE Alu -11 122 1 195 267 289 0 chr3 84605277 84605367 -133431791 - MIR SINE MIR -66 142 27 1692 133 10 44 chr3 84605961 84606293 -133430865 - AluSx SINE Alu 0 322 1 290 258 30 0 chr3 84606418 84606484 -133430674 + L2 LINE L2 3241 3308 -5 386 320 143 59 chr3 84607477 84607648 -133429510 + L2 LINE L2 2911 3066 -247 2394 94 0 0 chr3 84607648 84607945 -133429213 + AluSg SINE Alu 1 297 -13 386 320 143 59 chr3 84607945 84608145 -133429013 + L2 LINE L2 3066 3313 0 279 194 75 0 chr3 84611358 84611425 -133425733 - L1MC5 LINE L1 -58 7903 7832 2130 99 20 23 chr3 84611562 84611864 -133425294 + AluSx SINE Alu 1 301 -11 258 364 97 14 chr3 84612158 84612375 -133424783 + MIR SINE MIR 15 249 -13 658 144 21 0 chr3 84613333 84613430 -133423728 - AluJ/FLAM SINE Alu -212 100 2 331 195 49 37 chr3 84613615 84613697 -133423461 + MER117 DNA MER1_type 77 159 -38 2161 128 0 3 chr3 84616287 84616583 -133420575 + AluSq SINE Alu 1 295 -18 2175 130 9 35 chr3 84617455 84617800 -133419358 + MER1B DNA MER1_type 2 337 0 195 129 0 0 chr3 84618851 84618882 -133418276 + (TG)n Simple_repeat Simple_repeat 2 32 0 372 170 18 36 chr3 84618887 84618999 -133418159 + (CATA)n Simple_repeat Simple_repeat 4 113 0 203 278 0 0 chr3 84619048 84619102 -133418056 + L2 LINE L2 3219 3272 0 213 329 14 0 chr3 84619102 84619172 -133417986 + (TGGA)n Simple_repeat Simple_repeat 2 72 0 769 236 20 0 chr3 84619495 84619643 -133417515 - MER5A DNA MER1_type -36 153 3 327 292 34 77 chr3 84620230 84620439 -133416719 - L3b LINE CR1 -281 1302 1103 260 82 0 20 chr3 84621780 84621829 -133415329 + (TAAAA)n Simple_repeat Simple_repeat 5 52 0 764 209 45 60 chr3 84621914 84622115 -133415043 + MIR SINE MIR 65 262 0 1799 121 14 7 chr3 84622197 84622477 -133414681 + AluSx SINE Alu 1 282 -30 222 37 0 0 chr3 84622480 84622507 -133414651 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 460 331 60 20 chr3 84622567 84622818 -133414340 + MIR SINE MIR 2 262 0 237 324 265 0 chr3 84622843 84622945 -133414213 - L2 LINE L2 -3 3269 3141 30 27 0 0 chr3 84622976 84623013 -133414145 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr3 84623055 84623085 -133414073 + AT_rich Low_complexity Low_complexity 1 30 0 464 315 68 34 chr3 84624587 84624822 -133412336 - MIR SINE MIR -12 250 8 367 292 76 14 chr3 84624866 84625010 -133412148 - MIR SINE MIR -57 205 53 230 175 0 63 chr3 84625479 84625542 -133411616 + MER20B DNA MER1_type 34 92 -691 222 196 22 0 chr3 84625691 84625737 -133411421 + L2 LINE L2 3267 3313 0 3782 129 14 0 chr3 84626162 84626682 -133410476 + MER1A DNA MER1_type 1 527 0 2222 114 3 0 chr3 84627300 84627599 -133409559 + AluSx SINE Alu 1 300 -12 1712 92 8 54 chr3 84628282 84628542 -133408616 - AluSq SINE Alu -65 248 1 23 0 0 0 chr3 84629194 84629217 -133407941 + AT_rich Low_complexity Low_complexity 1 23 0 291 93 23 0 chr3 84630881 84630924 -133406234 + AluSq SINE Alu 1 44 -258 1702 112 0 0 chr3 84631185 84631409 -133405749 + AluSq SINE Alu 51 274 -39 2003 140 0 0 chr3 84632171 84632457 -133404701 - AluSx SINE Alu -26 286 1 207 329 13 38 chr3 84633171 84633250 -133403908 + MIR3 SINE MIR 99 175 -33 2372 89 7 0 chr3 84633311 84633614 -133403544 + AluSq SINE Alu 1 305 -8 32 26 0 0 chr3 84635082 84635121 -133402037 + AT_rich Low_complexity Low_complexity 1 39 0 303 373 39 7 chr3 84635294 84635447 -133401711 + MIR3 SINE MIR 38 195 -13 839 224 23 0 chr3 84635777 84635951 -133401207 - MER5A DNA MER1_type -3 186 9 255 125 0 0 chr3 84636059 84636099 -133401059 + (A)n Simple_repeat Simple_repeat 1 40 0 568 348 46 38 chr3 84636115 84636637 -133400521 + L2 LINE L2 2746 3272 0 488 330 5 16 chr3 84636682 84636867 -133400291 - MIR SINE MIR -4 258 76 420 272 16 128 chr3 84637016 84637266 -133399892 - MER102a DNA MER1_type -32 298 77 2031 102 46 0 chr3 84637681 84637966 -133399192 + AluSc SINE Alu 1 298 -11 219 88 0 0 chr3 84638093 84638127 -133399031 + (TG)n Simple_repeat Simple_repeat 2 35 0 316 251 78 78 chr3 84638272 84638555 -133398603 + L1MCa LINE L1 1639 1921 -4505 840 187 60 6 chr3 84639876 84640042 -133397116 - MER5A DNA MER1_type -14 175 1 231 291 35 35 chr3 84640171 84640257 -133396901 + LTR33 LTR ERVL 1 86 -435 239 208 0 0 chr3 84640550 84640603 -133396555 - L1MC4 LINE L1 -1338 6704 6652 24 0 0 0 chr3 84641068 84641092 -133396066 + AT_rich Low_complexity Low_complexity 1 24 0 1966 150 17 0 chr3 84641945 84642238 -133394920 + AluSx SINE Alu 1 298 -14 326 245 0 29 chr3 84642280 84642324 -133394834 + MER46A DNA MER2_type 1 45 -191 2313 99 3 0 chr3 84642324 84642627 -133394531 - AluSc SINE Alu -5 304 1 326 245 0 29 chr3 84642627 84642684 -133394474 + MER46A DNA MER2_type 45 99 -137 533 61 61 0 chr3 84642685 84642767 -133394391 + L1MA2 LINE L1 6037 6123 -181 1587 115 0 0 chr3 84644449 84644658 -133392500 + AluSg/x SINE Alu 95 303 -9 273 301 21 0 chr3 84645074 84645167 -133391991 + MIR3 SINE MIR 60 154 -54 230 298 94 30 chr3 84645974 84646106 -133391052 - MIR SINE MIR -64 144 44 2327 84 0 22 chr3 84646451 84646762 -133390396 - AluY SINE Alu -7 304 1 496 263 99 0 chr3 84647239 84647410 -133389748 + MIR SINE MIR 35 222 -40 454 327 45 5 chr3 84647815 84648014 -133389144 + MIR SINE MIR 20 226 -36 2440 82 0 0 chr3 84648620 84648914 -133388244 - AluY SINE Alu -17 294 1 571 250 153 5 chr3 84648939 84649135 -133388023 - MIR SINE MIR -18 244 20 463 327 12 0 chr3 84649839 84650007 -133387151 + MIR SINE MIR 45 214 -48 1976 168 36 36 chr3 84650232 84650620 -133386538 - MLT1B LTR MaLR -2 388 1 1395 197 8 4 chr3 84650673 84650927 -133386231 + AluJo SINE Alu 37 291 -21 2264 89 3 10 chr3 84650934 84651238 -133385920 + AluSx SINE Alu 1 302 -10 1992 117 46 3 chr3 84651244 84651527 -133385631 + AluSx SINE Alu 1 295 -17 26 0 0 0 chr3 84652527 84652553 -133384605 + AT_rich Low_complexity Low_complexity 1 26 0 574 284 48 14 chr3 84653013 84653221 -133383937 - MIR SINE MIR 0 262 48 209 259 17 17 chr3 84653735 84653793 -133383365 + MIR3 SINE MIR 15 72 -136 1311 279 52 64 chr3 84654115 84654688 -133382470 + L2 LINE L2 2248 2805 -508 1624 197 95 25 chr3 84654688 84655119 -133382039 + MER65C LTR ERV1 1 461 0 1311 279 52 64 chr3 84655119 84655617 -133381541 + L2 LINE L2 2805 3308 -5 23 0 0 0 chr3 84655980 84656003 -133381155 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr3 84656471 84656493 -133380665 + (A)n Simple_repeat Simple_repeat 1 22 0 770 232 71 114 chr3 84657061 84657500 -133379658 + L1MC4 LINE L1 7623 8042 0 2267 102 0 0 chr3 84657603 84657908 -133379250 + AluSx SINE Alu 1 305 0 334 280 68 8 chr3 84658720 84658838 -133378320 + MIR SINE MIR 22 146 -116 291 263 38 12 chr3 84659563 84659643 -133377515 + MLT1J2 LTR MaLR 122 203 -247 365 183 24 12 chr3 84659752 84659834 -133377324 + MLT1J1 LTR MaLR 364 446 0 185 316 0 25 chr3 84659863 84659942 -133377216 - L2 LINE L2 -8 3264 3188 2140 119 0 0 chr3 84660003 84660289 -133376869 + AluSx SINE Alu 1 286 -26 183 204 0 0 chr3 84661070 84661119 -133376039 + GA-rich Low_complexity Low_complexity 1 49 0 2209 108 17 0 chr3 84662289 84662576 -133374582 + AluSx SINE Alu 1 292 -20 259 289 55 83 chr3 84662631 84662849 -133374309 + Charlie8 DNA MER1_type 4 215 -2202 325 314 100 29 chr3 84663472 84663682 -133373476 + MIR SINE MIR 20 244 -18 1925 198 17 0 chr3 84664018 84664372 -133372786 + MLT1C LTR MaLR 62 421 -46 1369 138 18 0 chr3 84665208 84665426 -133371732 + AluSg/x SINE Alu 87 308 -4 22 35 0 0 chr3 84665568 84665597 -133371561 + AT_rich Low_complexity Low_complexity 1 29 0 201 277 142 26 chr3 84666438 84666593 -133370565 + MER5B DNA MER1_type 1 173 -5 21 0 0 0 chr3 84666713 84666734 -133370424 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr3 84666835 84666865 -133370293 + AT_rich Low_complexity Low_complexity 1 30 0 2011 134 0 17 chr3 84666873 84667164 -133369994 + AluSx SINE Alu 1 286 -26 300 53 0 0 chr3 84667169 84667207 -133369951 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 2402 86 3 0 chr3 84667725 84668026 -133369132 + AluSp SINE Alu 1 302 -11 421 300 58 0 chr3 84668102 84668222 -133368936 - MER91A DNA MER1_type -44 152 26 3430 199 54 45 chr3 84670416 84671156 -133366002 + MER21B LTR ERV1 12 761 -102 1858 180 69 19 chr3 84671156 84671533 -133365625 + MSTD LTR MaLR 1 396 0 3430 199 54 45 chr3 84671533 84671589 -133365569 + MER21B LTR ERV1 761 815 -48 265 291 156 28 chr3 84671692 84671871 -133365287 - MIR SINE MIR -28 234 33 219 245 0 0 chr3 84672538 84672591 -133364567 + GA-rich Low_complexity Low_complexity 1 53 0 2015 138 10 0 chr3 84673141 84673431 -133363727 - AluJb SINE Alu -18 294 2 21 0 0 0 chr3 84673569 84673590 -133363568 + AT_rich Low_complexity Low_complexity 1 21 0 2079 168 46 31 chr3 84674238 84674654 -133362504 + Tigger2a DNA MER2_type 1 422 -12 881 207 23 32 chr3 84675013 84675117 -133362041 + MER8 DNA MER2_type 1 104 -135 1937 107 33 4 chr3 84675117 84675389 -133361769 + AluSq SINE Alu 1 280 -33 210 37 0 0 chr3 84675389 84675416 -133361742 + (CAA)n Simple_repeat Simple_repeat 1 27 0 881 207 23 32 chr3 84675416 84675527 -133361631 + MER8 DNA MER2_type 102 215 -24 303 266 44 63 chr3 84675607 84675765 -133361393 - MER5A DNA MER1_type 0 189 35 1707 160 42 3 chr3 84676458 84676575 -133360583 + AluJb SINE Alu 1 112 -200 246 32 0 0 chr3 84676575 84676606 -133360552 + (CAA)n Simple_repeat Simple_repeat 2 32 0 1707 160 42 3 chr3 84676606 84676776 -133360382 + AluJb SINE Alu 112 299 -13 245 331 118 0 chr3 84678622 84678749 -133358409 + MIR SINE MIR 24 165 -97 1745 176 42 9 chr3 84678795 84679125 -133358033 + MER58B DNA MER1_type 1 341 0 2647 186 34 2 chr3 84679200 84679732 -133357426 - L1MB7 LINE L1 -16 6168 5620 2804 194 73 25 chr3 84679732 84680138 -133357020 - L1MB7 LINE L1 -1003 5143 4758 2420 72 0 31 chr3 84680138 84680457 -133356701 - AluY SINE Alu -2 309 1 2804 194 73 25 chr3 84680457 84680798 -133356360 - L1MB7 LINE L1 -1388 4758 4360 294 221 211 11 chr3 84680940 84681035 -133356123 + L2 LINE L2 3199 3312 -1 435 324 50 23 chr3 84681581 84681800 -133355358 - MIR SINE MIR -30 232 8 189 268 0 0 chr3 84685015 84685071 -133352087 + (TA)n Simple_repeat Simple_repeat 1 56 0 240 254 0 0 chr3 84685076 84685135 -133352023 - L1MC4 LINE L1 -1339 6703 6645 22 0 0 0 chr3 84685224 84685246 -133351912 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr3 84685287 84685325 -133351833 + AT_rich Low_complexity Low_complexity 1 38 0 253 250 0 28 chr3 84685394 84685466 -133351692 + A-rich Low_complexity Low_complexity 3 72 0 23 0 0 0 chr3 84686130 84686153 -133351005 + AT_rich Low_complexity Low_complexity 1 23 0 237 228 34 60 chr3 84686217 84686350 -133350808 + MIR SINE MIR 20 148 -73 246 208 0 56 chr3 84687953 84688025 -133349133 + GA-rich Low_complexity Low_complexity 2 69 0 204 97 0 0 chr3 84689311 84689342 -133347816 + (CA)n Simple_repeat Simple_repeat 2 32 0 1859 168 24 0 chr3 84689438 84689735 -133347423 - AluJb SINE Alu -8 304 1 429 239 137 41 chr3 84689856 84690053 -133347105 - MIR SINE MIR 0 262 47 2033 138 0 7 chr3 84690423 84690713 -133346445 - AluSx SINE Alu -24 288 1 225 0 0 0 chr3 84690899 84690924 -133346234 + (A)n Simple_repeat Simple_repeat 1 25 0 592 274 8 47 chr3 84691295 84691529 -133345629 + MIR SINE MIR 6 230 -32 258 271 0 0 chr3 84693168 84693238 -133343920 + L1M4 LINE L1 4095 4164 -1982 374 298 121 23 chr3 84693434 84693739 -133343419 + L1M4 LINE L1 4459 4793 -1353 22 35 0 0 chr3 84694015 84694044 -133343114 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr3 84694067 84694104 -133343054 + AT_rich Low_complexity Low_complexity 1 37 0 846 170 81 30 chr3 84694128 84694363 -133342795 + MER114 LTR ERV 39 285 -363 23 0 0 0 chr3 84696372 84696395 -133340763 + AT_rich Low_complexity Low_complexity 1 23 0 1552 202 3 21 chr3 84696571 84696858 -133340300 + AluJo SINE Alu 1 282 -30 24 0 0 0 chr3 84696864 84696888 -133340270 + AT_rich Low_complexity Low_complexity 1 24 0 236 259 37 0 chr3 84698056 84698137 -133339021 - MIR SINE MIR -55 207 124 234 191 0 0 chr3 84698419 84698466 -133338692 + GA-rich Low_complexity Low_complexity 2 48 0 2447 65 0 0 chr3 84698815 84699106 -133338052 + AluY SINE Alu 15 305 -6 1067 216 33 33 chr3 84699257 84699558 -133337600 + L1ME4a LINE L1 5604 5904 -217 25 31 0 0 chr3 84699876 84699908 -133337250 + AT_rich Low_complexity Low_complexity 1 32 0 1919 134 65 0 chr3 84700310 84700600 -133336558 - AluSg SINE Alu 0 310 2 2339 93 0 13 chr3 84700988 84701299 -133335859 - AluSc SINE Alu -2 307 1 2129 75 0 8 chr3 84701308 84701576 -133335582 - AluY SINE Alu -12 299 34 1189 272 29 87 chr3 84701834 84702067 -133335091 + MLT1K LTR MaLR 3 248 -340 1799 166 0 11 chr3 84702067 84702351 -133334807 + AluJb SINE Alu 1 281 -31 1189 272 29 87 chr3 84702351 84702679 -133334479 + MLT1K LTR MaLR 248 531 -57 3504 157 14 55 chr3 84702904 84703559 -133333599 + L1MB7 LINE L1 5487 6112 -72 2073 113 38 0 chr3 84703559 84703851 -133333307 - AluSx SINE Alu -9 303 1 3504 157 14 55 chr3 84703851 84703910 -133333248 + L1MB7 LINE L1 6112 6172 -12 617 236 68 0 chr3 84704018 84704179 -133332979 + MIR SINE MIR 79 250 -12 758 241 37 46 chr3 84704747 84704963 -133332195 - MIR SINE MIR -13 249 36 438 254 166 36 chr3 84705061 84705254 -133331904 - MIR SINE MIR -14 248 31 238 200 44 0 chr3 84705758 84705803 -133331355 - Tigger5 DNA MER2_type -1996 327 281 328 256 41 16 chr3 84706835 84706956 -133330202 - MIR SINE MIR -3 259 136 2015 103 57 0 chr3 84707346 84707628 -133329530 + AluSx SINE Alu 9 306 -6 201 289 0 40 chr3 84708410 84708486 -133328672 + (TGAA)n Simple_repeat Simple_repeat 4 76 0 404 286 114 6 chr3 84709750 84709925 -133327233 - MIR SINE MIR -3 259 66 419 125 0 58 chr3 84710487 84710591 -133326567 + (GGGGA)n Simple_repeat Simple_repeat 3 100 0 242 184 0 0 chr3 84710598 84710636 -133326522 + polypurine Low_complexity Low_complexity 4 41 0 942 167 10 88 chr3 84710934 84711126 -133326032 + MER45A DNA AcHobo 1 177 -1 2427 83 7 0 chr3 84711149 84711451 -133325707 - AluSx SINE Alu -8 304 1 324 266 77 86 chr3 84711970 84712203 -133324955 + L1ME4a LINE L1 5782 6012 -109 1955 52 44 20 chr3 84712286 84712538 -133324620 - AluY SINE Alu -11 300 43 244 211 42 28 chr3 84717530 84717601 -133319557 - MER5A DNA MER1_type -5 184 113 243 243 108 61 chr3 84717548 84717696 -133319462 + MER5A DNA MER1_type 35 189 0 * 212 350 20 30 chr3 84717833 84717933 -133319225 - MER5A DNA MER1_type -3 186 88 258 32 0 0 chr3 84717947 84717978 -133319180 + (CA)n Simple_repeat Simple_repeat 2 32 0 25 31 0 0 chr3 84718833 84718865 -133318293 + AT_rich Low_complexity Low_complexity 1 32 0 333 68 0 0 chr3 84722110 84722154 -133315004 + (T)n Simple_repeat Simple_repeat 1 44 0 38 68 0 0 chr3 84725528 84725601 -133311557 + GC_rich Low_complexity Low_complexity 1 73 0 288 154 0 0 chr3 84725931 84725983 -133311175 + T-rich Low_complexity Low_complexity 1 52 0 198 171 0 0 chr3 84726161 84726202 -133310956 + (CACG)n Simple_repeat Simple_repeat 3 43 0 189 121 0 0 chr3 84726304 84726337 -133310821 + (CGG)n Simple_repeat Simple_repeat 3 35 0 207 156 0 0 chr3 84726484 84726516 -133310642 + C-rich Low_complexity Low_complexity 1 32 0 234 0 0 0 chr3 84727729 84727755 -133309403 + (TTG)n Simple_repeat Simple_repeat 2 27 0 256 264 132 22 chr3 84728365 84728456 -133308702 - L2 LINE L2 -21 3251 3151 309 220 88 0 chr3 84728466 84728557 -133308601 - MIR SINE MIR 0 262 164 270 226 151 9 chr3 84729761 84729867 -133307291 + MER113 DNA MER1_type? 108 228 -293 186 191 0 0 chr3 84729985 84730027 -133307131 + T-rich Low_complexity Low_complexity 1 42 0 264 216 54 0 chr3 84730027 84730101 -133307057 + MER113 DNA MER1_type? 365 442 -79 349 274 20 20 chr3 84730162 84730264 -133306894 - MIR SINE MIR -69 139 38 347 282 174 13 chr3 84731251 84731400 -133305758 + MER5A DNA MER1_type 11 183 -6 1920 221 30 57 chr3 84732675 84732737 -133304421 + L1MD3 LINE L1 6538 6600 -1395 231 103 0 0 chr3 84732737 84732776 -133304382 + (CA)n Simple_repeat Simple_repeat 2 40 0 1920 221 30 57 chr3 84732776 84733237 -133303921 + L1MD3 LINE L1 6600 7047 -948 238 185 19 37 chr3 84733303 84733357 -133303801 + MER5A DNA MER1_type 114 166 -23 348 303 80 43 chr3 84733361 84733549 -133303609 - MER102b DNA MER1_type -20 321 127 1760 181 3 3 chr3 84733944 84734242 -133302916 + AluJb SINE Alu 1 298 -14 850 199 62 0 chr3 84734733 84734894 -133302264 - MER5B DNA MER1_type -3 175 5 180 135 54 27 chr3 84735070 84735107 -133302051 + MER5A DNA MER1_type 14 51 -138 241 343 46 37 chr3 84735170 84735278 -133301880 + MER5A DNA MER1_type 77 185 -4 283 333 122 36 chr3 84735528 84735750 -133301408 + MIR SINE MIR 15 255 -7 761 192 141 45 chr3 84736075 84736273 -133300885 - MER20 DNA MER1_type 0 219 3 551 256 8 23 chr3 84737177 84737306 -133299852 - L2 LINE L2 0 3313 3187 221 255 0 0 chr3 84737658 84737705 -133299453 + GA-rich Low_complexity Low_complexity 1 47 0 397 274 179 11 chr3 84738702 84738892 -133298266 + L2 LINE L2 3091 3312 -1 1022 280 94 22 chr3 84739490 84739523 -133297635 - MARNA DNA Mariner -9 577 548 336 24 0 0 chr3 84739523 84739564 -133297594 + (CA)n Simple_repeat Simple_repeat 1 41 0 1022 280 94 22 chr3 84739564 84740030 -133297128 - MARNA DNA Mariner -38 548 42 378 244 42 48 chr3 84740286 84740442 -133296716 - L1ME4a LINE L1 0 6121 5965 294 29 0 0 chr3 84740442 84740477 -133296681 + (TG)n Simple_repeat Simple_repeat 1 35 0 378 244 42 48 chr3 84740477 84740488 -133296670 - L1ME4a LINE L1 -156 5965 5955 525 249 83 30 chr3 84740490 84740704 -133296454 + MIR SINE MIR 45 262 0 1157 124 36 41 chr3 84741009 84741203 -133295955 + MER20 DNA MER1_type 23 215 -4 463 371 50 0 chr3 84741283 84741504 -133295654 - MIR SINE MIR -14 248 17 533 278 50 33 chr3 84741584 84741764 -133295394 + MER117 DNA MER1_type 15 197 0 430 239 102 51 chr3 84743777 84743952 -133293206 + MIR SINE MIR 1 184 -78 1247 286 86 9 chr3 84743952 84744382 -133292776 - LTR16B LTR ERVL 0 464 2 228 135 0 0 chr3 84744451 84744488 -133292670 + (ATGGTG)n Simple_repeat Simple_repeat 4 40 0 2681 221 30 44 chr3 84744772 84745231 -133291927 + L1ME1 LINE L1 228 692 -5704 2731 16 0 13 chr3 84745231 84745535 -133291623 + AluYb8 SINE Alu 1 300 -18 2681 221 30 44 chr3 84745535 84745546 -133291612 + L1ME1 LINE L1 692 702 -5694 2320 89 3 10 chr3 84745546 84745849 -133291309 + AluY SINE Alu 1 301 -10 2681 221 30 44 chr3 84745849 84746105 -133291053 + L1ME1 LINE L1 702 945 -5451 5791 202 70 107 chr3 84746108 84747315 -133289843 + L1ME1 LINE L1 2975 4225 -2010 2039 152 0 0 chr3 84747315 84747617 -133289541 + AluJo SINE Alu 11 312 0 5791 202 70 107 chr3 84747617 84748175 -133288983 + L1ME1 LINE L1 4225 4802 -1433 2250 109 0 0 chr3 84748175 84748502 -133288656 - AluSx SINE Alu 0 327 1 5791 202 70 107 chr3 84748502 84748759 -133288399 + L1ME1 LINE L1 4802 5067 -1168 721 210 35 0 chr3 84748759 84748902 -133288256 + AluJb SINE Alu 156 303 -9 5791 202 70 107 chr3 84748902 84749533 -133287625 + L1ME1 LINE L1 5067 5657 -578 839 215 0 38 chr3 84749535 84749721 -133287437 - FRAM SINE Alu 0 176 1 397 240 0 24 chr3 84749721 84749846 -133287312 + L1ME1 LINE L1 5653 5774 -654 329 147 107 0 chr3 84749844 84749919 -133287239 + L1MB3 LINE L1 6101 6183 0 * 1699 265 36 2 chr3 84749951 84750393 -133286765 + L1ME1 LINE L1 5760 6216 -19 298 323 140 53 chr3 84750864 84751220 -133285938 + L2 LINE L2 2877 3263 -9 371 140 52 118 chr3 84752074 84752210 -133284948 - Charlie7 DNA MER1_type 0 2612 2486 1075 170 50 103 chr3 84752279 84752496 -133284662 + AluJo SINE Alu 1 199 -103 2281 117 0 0 chr3 84752496 84752794 -133284364 - AluSx SINE Alu -14 298 1 1075 170 50 103 chr3 84752794 84752876 -133284282 + AluJo SINE Alu 199 284 -18 280 183 52 104 chr3 84752888 84753003 -133284155 - Charlie7 DNA MER1_type -2499 113 5 225 305 112 41 chr3 84753563 84753760 -133283398 - Charlie8 DNA MER1_type -2146 271 61 1200 206 0 18 chr3 84753826 84754054 -133283104 + MER58A DNA MER1_type 1 224 0 536 254 19 67 chr3 84754296 84754505 -133282653 + MIR SINE MIR 19 217 -45 526 291 59 73 chr3 84754893 84755027 -133282131 + L1MC4 LINE L1 7505 7639 -403 2184 110 0 7 chr3 84755027 84755318 -133281840 + AluSg SINE Alu 1 289 -21 526 291 59 73 chr3 84755318 84755689 -133281469 + L1MC4 LINE L1 7639 8003 -39 21 0 0 0 chr3 84755722 84755743 -133281415 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr3 84755764 84755799 -133281359 + AT_rich Low_complexity Low_complexity 1 35 0 2263 115 0 13 chr3 84755877 84756190 -133280968 + AluSx SINE Alu 1 309 -3 1724 199 93 46 chr3 84756218 84756700 -133280458 - MLT1D LTR MaLR 0 505 1 2402 81 3 0 chr3 84756751 84757046 -133280112 - AluSp SINE Alu -17 296 1 207 0 0 0 chr3 84757072 84757095 -133280063 + (CAG)n Simple_repeat Simple_repeat 2 24 0 409 277 35 7 chr3 84757099 84757240 -133279918 - MIR SINE MIR -12 250 106 180 0 0 0 chr3 84757695 84757715 -133279443 + (A)n Simple_repeat Simple_repeat 1 20 0 2338 110 0 0 chr3 84757726 84758026 -133279132 + AluSc SINE Alu 1 300 -9 876 92 0 0 chr3 84758730 84758849 -133278309 + AluY SINE Alu 193 311 0 915 218 63 15 chr3 84759531 84759737 -133277421 - MER20 DNA MER1_type 0 219 4 2259 111 0 0 chr3 84760108 84760406 -133276752 - AluSx SINE Alu -14 298 1 337 280 30 68 chr3 84760426 84760558 -133276600 + MER5B DNA MER1_type 2 128 -50 1314 167 13 17 chr3 84760577 84760811 -133276347 - AluJo SINE Alu -31 281 49 831 294 104 51 chr3 84761620 84762170 -133274988 + MLT1K LTR MaLR 2 580 -8 1524 134 37 0 chr3 84762328 84762545 -133274613 - AluJb SINE Alu -17 295 71 368 288 58 22 chr3 84763139 84763278 -133273880 + MIR SINE MIR 2 145 -117 284 300 20 10 chr3 84763823 84763923 -133273235 - L2 LINE L2 -6 3307 3207 218 371 40 32 chr3 84764566 84764690 -133272468 + L2 LINE L2 3125 3249 -23 202 236 0 18 chr3 84764782 84764837 -133272321 - MER5B DNA MER1_type -117 61 8 374 265 66 42 chr3 84765050 84765216 -133271942 + L1MC4a LINE L1 5713 5882 -1926 1767 199 75 11 chr3 84765237 84765674 -133271484 + MLT1C LTR MaLR 1 465 -2 233 269 0 15 chr3 84765939 84766006 -133271152 + MIR SINE MIR 103 168 -94 886 197 37 32 chr3 84766258 84766476 -133270682 - MER20 DNA MER1_type 0 219 1 422 238 157 58 chr3 84766486 84766559 -133270599 + MER5A DNA MER1_type 1 65 -124 2134 131 0 3 chr3 84766559 84766856 -133270302 + AluSx SINE Alu 1 296 -16 312 27 0 0 chr3 84766856 84766893 -133270265 + (GGAA)n Simple_repeat Simple_repeat 3 39 0 422 238 157 58 chr3 84766893 84766990 -133270168 + MER5A DNA MER1_type 64 189 0 2196 118 3 0 chr3 84767040 84767336 -133269822 + AluSp SINE Alu 1 297 -16 1824 181 0 0 chr3 84767344 84767636 -133269522 + AluSx SINE Alu 1 292 -20 202 333 54 32 chr3 84767638 84767731 -133269427 + MER5A DNA MER1_type 47 141 -48 2435 103 14 25 chr3 84768752 84769120 -133268038 - THE1B LTR MaLR 0 364 1 475 297 136 4 chr3 84769322 84769558 -133267600 + L1ME LINE L1 5519 5785 -336 2452 73 3 22 chr3 84769661 84769977 -133267181 - AluY SINE Alu -1 310 1 2066 113 7 10 chr3 84769979 84770270 -133266888 - AluSx SINE Alu -19 293 4 366 237 43 88 chr3 84772609 84772842 -133264316 + MLT1I LTR MaLR 57 307 -242 1620 175 20 14 chr3 84773012 84773309 -133263849 - AluJb SINE Alu -2 310 12 263 255 20 107 chr3 84773728 84773877 -133263281 + L2 LINE L2 2185 2320 -994 753 228 149 92 chr3 84773995 84774177 -133262981 + LTR16C LTR ERVL 8 178 -313 2029 161 3 3 chr3 84774177 84774487 -133262671 + AluJb SINE Alu 1 310 -2 753 228 149 92 chr3 84774487 84774748 -133262410 + LTR16C LTR ERVL 178 476 -15 291 28 0 0 chr3 84774809 84774845 -133262313 + (CA)n Simple_repeat Simple_repeat 2 37 0 893 291 121 21 chr3 84774852 84775471 -133261687 - L2 LINE L2 0 3313 2643 207 288 15 0 chr3 84775745 84775811 -133261347 - L2 LINE L2 -259 3054 2988 2113 131 3 10 chr3 84775814 84776120 -133261038 - AluSx SINE Alu -8 304 1 1640 160 20 47 chr3 84776592 84776892 -133260266 - AluJo SINE Alu -18 294 3 381 22 0 0 chr3 84777171 84777217 -133259941 + (TC)n Simple_repeat Simple_repeat 1 46 0 1323 166 45 4 chr3 84777411 84777676 -133259482 + MER33 DNA MER1_type 27 302 -22 2422 95 0 0 chr3 84779457 84779762 -133257396 - AluSx SINE Alu -7 305 1 230 239 14 0 chr3 84780053 84780124 -133257034 + GA-rich Low_complexity Low_complexity 2 73 0 698 278 46 5 chr3 84780280 84780496 -133256662 + MIR SINE MIR 33 257 -5 447 183 39 10 chr3 84781711 84781815 -133255343 - MER5A DNA MER1_type -79 110 4 1639 160 23 16 chr3 84782174 84782481 -133254677 - AluJo SINE Alu -1 311 3 265 186 43 14 chr3 84782486 84782556 -133254602 + MLT1K LTR MaLR 517 588 0 562 230 31 19 chr3 84783464 84783625 -133253533 - MIR SINE MIR -1 261 99 2260 113 0 3 chr3 84783758 84784067 -133253091 - AluSx SINE Alu -4 308 1 338 162 0 95 chr3 84784527 84784601 -133252557 + LTR67 LTR ERVL 474 540 -17 303 289 59 0 chr3 84784739 84784874 -133252284 - MIR SINE MIR -3 259 117 231 114 0 0 chr3 84785147 84785182 -133251976 + (TCCC)n Simple_repeat Simple_repeat 1 35 0 1897 164 0 0 chr3 84785193 84785479 -133251679 - AluJb SINE Alu -26 286 1 717 290 139 55 chr3 84785774 84786315 -133250843 + MLT1K LTR MaLR 2 587 -1 2929 91 35 26 chr3 84786416 84786868 -133250290 + L1MA1 LINE L1 5847 6302 0 1811 142 29 14 chr3 84786880 84787161 -133249997 + AluSx SINE Alu 1 285 -27 39 22 0 0 chr3 84787162 84787208 -133249950 + AT_rich Low_complexity Low_complexity 1 46 0 1883 253 167 27 chr3 84787409 84788042 -133249116 - L2 LINE L2 -16 3297 2754 252 0 0 0 chr3 84788042 84788070 -133249088 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2230 110 0 0 chr3 84788072 84788354 -133248804 - AluSx SINE Alu -30 282 1 1883 253 167 27 chr3 84788354 84788558 -133248600 - L2 LINE L2 -559 2754 2580 1115 180 13 0 chr3 84788558 84788786 -133248372 - L1MB4 LINE L1 0 6180 5950 1883 253 167 27 chr3 84788786 84788917 -133248241 - L2 LINE L2 -733 2580 2216 2659 52 0 0 chr3 84791423 84791732 -133245426 + AluY SINE Alu 1 309 -2 243 0 0 0 chr3 84792651 84792678 -133244480 + (CA)n Simple_repeat Simple_repeat 2 28 0 1775 146 59 7 chr3 84792756 84793044 -133244114 - AluSx SINE Alu -9 303 1 485 242 70 90 chr3 84793044 84793300 -133243858 + MER102b DNA MER1_type 91 341 0 835 205 240 4 chr3 84793483 84793737 -133243421 + MER46C DNA MER2_type 1 314 -24 183 42 0 0 chr3 84793962 84793986 -133243172 + (TTTTTA)n Simple_repeat Simple_repeat 3 26 0 309 96 0 0 chr3 84798282 84798300 -133238858 + (T)n Simple_repeat Simple_repeat 1 18 -34 294 29 0 0 chr3 84798300 84798335 -133238823 + (TA)n Simple_repeat Simple_repeat 2 36 0 309 96 0 0 chr3 84798335 84798368 -133238790 + (T)n Simple_repeat Simple_repeat 17 52 0 1761 122 82 21 chr3 84798439 84798718 -133238440 - AluJb SINE Alu -16 296 1 2361 52 0 14 chr3 84798801 84799139 -133238019 - AluY SINE Alu 0 334 1 2026 151 0 25 chr3 84799424 84799741 -133237417 - AluJb SINE Alu -3 309 1 289 329 86 14 chr3 84801151 84801314 -133235844 + MIR SINE MIR 2 178 -30 247 319 89 22 chr3 84801593 84801728 -133235430 - MIR SINE MIR -103 159 16 287 276 35 0 chr3 84802468 84802555 -133234603 + MER5A DNA MER1_type 16 105 -84 203 111 0 56 chr3 84802848 84802884 -133234274 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 291 242 16 0 chr3 84803983 84804045 -133233113 + MIR SINE MIR 87 149 -59 373 293 13 31 chr3 84804198 84804352 -133232806 + MIR SINE MIR 15 169 -39 200 267 22 0 chr3 84804343 84804383 -133232775 + L2 LINE L2 3251 3291 -22 516 243 257 5 chr3 84804383 84804589 -133232569 + MIR SINE MIR 3 260 -2 352 285 59 70 chr3 84804801 84804987 -133232171 + MIR SINE MIR 66 249 -13 194 324 27 0 chr3 84806771 84806845 -133230313 - MIR SINE MIR -109 153 78 417 267 107 13 chr3 84806943 84807093 -133230065 + MLT1K LTR MaLR 123 286 -302 1963 114 15 4 chr3 84807127 84807415 -133229743 + AluSx SINE Alu 16 306 0 333 224 56 9 chr3 84807482 84807589 -133229569 + MLT1K LTR MaLR 454 565 -23 20680 89 1 11 chr3 84808103 84809171 -133227987 + L1PA7 LINE L1 2622 3699 -2455 2163 118 0 7 chr3 84809171 84809476 -133227682 + AluSx SINE Alu 1 303 -9 20680 89 1 11 chr3 84809476 84811934 -133225224 + L1PA7 LINE L1 3699 6154 0 419 247 73 33 chr3 84813303 84813471 -133223687 - MIR SINE MIR -51 211 36 428 207 153 9 chr3 84816225 84816336 -133220822 + L2 LINE L2 3187 3313 0 22 0 0 0 chr3 84816403 84816425 -133220733 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr3 84816425 84816447 -133220711 + (TA)n Simple_repeat Simple_repeat 1 22 0 2234 131 0 0 chr3 84816610 84816922 -133220236 - AluSx SINE Alu 0 312 1 224 295 11 95 chr3 84817085 84817180 -133219978 + MIR SINE MIR 17 103 -105 273 282 26 0 chr3 84817349 84817427 -133219731 - MIR3 SINE MIR -52 156 77 546 266 33 8 chr3 84818098 84818234 -133218924 + MIR3 SINE MIR 20 158 -50 586 208 35 64 chr3 84818357 84818530 -133218628 + MIR SINE MIR 20 187 -75 449 260 130 6 chr3 84818811 84818988 -133218170 + L1ME3A LINE L1 5965 6163 -7 370 149 11 81 chr3 84822723 84822759 -133214399 + MIR3 SINE MIR 125 162 -46 436 277 145 6 chr3 84822759 84822925 -133214233 + MER5A DNA MER1_type 1 189 0 370 149 11 81 chr3 84822925 84822975 -133214183 + MIR3 SINE MIR 162 205 -3 352 315 84 24 chr3 84823380 84823593 -133213565 - Tigger8 DNA MER2_type -2 664 439 684 251 81 9 chr3 84823651 84823862 -133213296 - Tigger8 DNA MER2_type -310 356 131 180 152 0 0 chr3 84827256 84827289 -133209869 + A-rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr3 84827367 84827389 -133209769 + AT_rich Low_complexity Low_complexity 1 22 0 2078 106 3 14 chr3 84827887 84828179 -133208979 - AluSx SINE Alu -23 289 1 1916 142 0 35 chr3 84828490 84828806 -133208352 - AluJb SINE Alu -7 305 1 324 0 0 0 chr3 84829060 84829096 -133208062 + (TG)n Simple_repeat Simple_repeat 2 37 0 1262 182 42 68 chr3 84829433 84829516 -133207642 - MER58B DNA MER1_type -2081 339 255 2183 126 0 3 chr3 84829516 84829818 -133207340 - AluSq SINE Alu -12 301 1 1262 182 42 68 chr3 84829818 84830042 -133207116 - MER58B DNA MER1_type -2165 255 40 519 233 87 52 chr3 84830909 84831081 -133206077 - MIR3 SINE MIR -9 199 22 531 217 69 51 chr3 84831565 84831740 -133205418 + MER104 DNA MER2_type 3 180 0 22 0 0 0 chr3 84832362 84832384 -133204774 + AT_rich Low_complexity Low_complexity 1 22 0 252 250 33 0 chr3 84833881 84833941 -133203217 + CT-rich Low_complexity Low_complexity 3 64 0 967 233 60 16 chr3 84833987 84834236 -133202922 + L1ME3A LINE L1 5911 6170 0 370 224 0 0 chr3 84834752 84834828 -133202330 - MIR SINE MIR -69 139 64 1863 164 7 3 chr3 84835104 84835402 -133201756 - AluJo SINE Alu -12 300 2 195 232 0 0 chr3 84836110 84836166 -133200992 + (TA)n Simple_repeat Simple_repeat 2 57 0 471 268 57 31 chr3 84837186 84837380 -133199778 + MIR SINE MIR 48 246 -16 4954 142 23 33 chr3 84839147 84839205 -133197953 - L1MA3 LINE L1 0 6305 6248 2361 67 7 10 chr3 84839205 84839503 -133197655 - AluY SINE Alu -14 297 1 1964 141 0 17 chr3 84839509 84839806 -133197352 - AluJo SINE Alu -20 292 1 4954 142 23 33 chr3 84839806 84840608 -133196550 - L1MA3 LINE L1 -62 6243 5447 990 304 110 29 chr3 84840920 84841410 -133195748 + MLT1K LTR MaLR 4 533 -55 1898 143 3 23 chr3 84841424 84841724 -133195434 + AluJb SINE Alu 1 294 -18 1923 151 0 13 chr3 84842376 84842680 -133194478 + AluJb SINE Alu 2 301 -11 1659 77 0 5 chr3 84842910 84843119 -133194039 + AluSg/x SINE Alu 93 300 -10 1443 203 62 34 chr3 84843301 84843656 -133193502 + MLT1A1 LTR MaLR 1 365 0 439 212 89 14 chr3 84843742 84843888 -133193270 - MIR SINE MIR -20 242 86 306 303 0 0 chr3 84844501 84844567 -133192591 - MIR SINE MIR -191 71 6 184 318 15 15 chr3 84845649 84845715 -133191443 - L2 LINE L2 -2 3270 3205 216 0 0 0 chr3 84846297 84846321 -133190837 + (A)n Simple_repeat Simple_repeat 1 24 0 385 258 77 41 chr3 84847894 84848115 -133189043 - MER113 DNA MER1_type? -285 236 8 786 191 0 8 chr3 84848281 84848412 -133188746 - FLAM_A SINE Alu -3 130 1 1706 165 0 21 chr3 84849031 84849322 -133187836 + AluJo SINE Alu 12 296 -16 501 263 79 22 chr3 84849651 84849845 -133187313 - MIR SINE MIR -39 223 23 409 239 68 8 chr3 84849916 84850033 -133187125 - MIR SINE MIR -29 233 110 559 222 85 13 chr3 84850069 84850222 -133186936 - MER106B DNA MER1_type 0 1059 896 201 182 36 0 chr3 84850331 84850354 -133186804 + (TTCA)n Simple_repeat Simple_repeat 4 25 -35 1799 118 49 59 chr3 84850354 84850659 -133186499 - AluSx SINE Alu -10 302 1 201 182 36 0 chr3 84850659 84850690 -133186468 + (TTCA)n Simple_repeat Simple_repeat 25 60 0 841 254 92 4 chr3 84850690 84850950 -133186208 + L1ME2 LINE L1 5873 6155 -9 1811 162 10 14 chr3 84851870 84852166 -133184992 - AluJo SINE Alu -17 295 1 416 309 15 7 chr3 84852236 84852372 -133184786 - MIR SINE MIR -2 260 124 1833 149 0 20 chr3 84854180 84854482 -133182676 + AluSx SINE Alu 1 296 -16 21 36 0 0 chr3 84855196 84855224 -133181934 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr3 84855338 84855358 -133181800 + (A)n Simple_repeat Simple_repeat 1 20 0 288 325 65 24 chr3 84855583 84855752 -133181406 - MIR SINE MIR -3 259 84 1970 159 0 0 chr3 84855920 84856215 -133180943 - AluJo SINE Alu -9 303 9 2226 112 0 3 chr3 84856415 84856718 -133180440 + AluSq SINE Alu 1 302 -11 668 114 0 30 chr3 84856719 84856850 -133180308 + (GGAA)n Simple_repeat Simple_repeat 1 127 0 200 286 16 0 chr3 84856872 84856935 -133180223 + MIR3 SINE MIR 120 183 -25 1132 197 28 5 chr3 84857533 84857746 -133179412 + MER20 DNA MER1_type 1 218 -1 250 274 170 9 chr3 84857784 84857890 -133179268 - L2 LINE L2 0 3313 3191 403 290 220 5 chr3 84858241 84858441 -133178717 - MIR SINE MIR 0 262 20 2530 60 0 3 chr3 84858717 84859019 -133178139 - AluY SINE Alu -10 301 1 382 328 48 11 chr3 84859092 84859278 -133177880 - MIR SINE MIR -58 204 12 215 302 93 0 chr3 84859634 84859720 -133177438 + MER5A DNA MER1_type 9 102 -87 393 282 0 0 chr3 84860027 84860112 -133177046 + MIR3 SINE MIR 114 198 -10 628 246 96 20 chr3 84860166 84860365 -133176793 + MIR SINE MIR 16 229 -33 260 193 138 46 chr3 84861813 84861922 -133175236 + MER5A DNA MER1_type 51 169 -20 * 331 227 45 18 chr3 84861839 84861949 -133175209 - MER5A DNA MER1_type -74 115 3 214 244 0 0 chr3 84862045 84862086 -133175072 - L2 LINE L2 -22 3250 3210 1763 158 4 0 chr3 84862236 84862502 -133174656 + AluJo SINE Alu 20 286 -26 1563 151 14 65 chr3 84862689 84862980 -133174178 - AluJo SINE Alu -36 276 1 443 274 153 60 chr3 84863727 84863942 -133173216 - L2 LINE L2 -18 3295 3102 2058 138 38 38 chr3 84863942 84864311 -133172847 + THE1C LTR MaLR 5 373 -2 443 274 153 60 chr3 84864311 84864579 -133172579 - L2 LINE L2 -211 3102 2767 585 267 121 59 chr3 84864580 84864984 -133172174 - L2 LINE L2 -824 2490 2062 401 232 67 61 chr3 84865350 84865514 -133171644 - MIR SINE MIR -39 223 59 454 280 93 66 chr3 84866721 84867010 -133170148 - L2 LINE L2 0 3313 3017 251 313 12 12 chr3 84867058 84867138 -133170020 + L2 LINE L2 3191 3270 -2 350 273 105 99 chr3 84867618 84867759 -133169399 - L1M2 LINE L1 -5482 1367 1228 188 57 0 57 chr3 84867759 84867794 -133169364 + (CGG)n Simple_repeat Simple_repeat 3 35 0 350 273 105 99 chr3 84867794 84867924 -133169234 - L1M2 LINE L1 -5621 1228 1100 278 26 26 0 chr3 84867924 84867963 -133169195 + (CCCCG)n Simple_repeat Simple_repeat 1 40 0 350 273 105 99 chr3 84867963 84868184 -133168974 - L1M2 LINE L1 -5749 1100 871 214 346 20 7 chr3 84868314 84868467 -133168691 + (TGGA)n Simple_repeat Simple_repeat 3 157 0 955 194 65 5 chr3 84869410 84869611 -133167547 - MIR SINE MIR -42 220 8 741 275 97 17 chr3 84869801 84870161 -133166997 - L1MC4a LINE L1 -1876 5932 5544 691 249 6 17 chr3 84870863 84871040 -133166118 - MIR3 SINE MIR -14 194 20 560 211 124 25 chr3 84871280 84871441 -133165717 - MIR3 SINE MIR -10 198 22 286 326 59 22 chr3 84871700 84871835 -133165323 - MIR3 SINE MIR 0 208 69 532 224 168 53 chr3 84871920 84872148 -133165010 + MIR SINE MIR 8 254 -8 342 271 39 54 chr3 84872154 84872283 -133164875 - L2 LINE L2 0 3313 3187 369 0 0 0 chr3 84872284 84872325 -133164833 + (TG)n Simple_repeat Simple_repeat 2 42 0 417 294 71 42 chr3 84872701 84872939 -133164219 + MIR SINE MIR 14 258 -4 1897 142 22 35 chr3 84873198 84873514 -133163644 - AluJb SINE Alu 0 312 1 302 280 145 34 chr3 84873546 84873917 -133163241 + L2 LINE L2 2560 3025 -288 230 356 17 0 chr3 84873996 84874114 -133163044 + L2 LINE L2 3193 3312 -1 295 282 103 0 chr3 84874529 84874646 -133162512 + L2 LINE L2 3142 3270 -2 237 363 18 9 chr3 84875321 84875434 -133161724 + MIR SINE MIR 79 192 -70 484 265 10 0 chr3 84875594 84875696 -133161462 - MER81 DNA DNA 0 114 12 6291 153 14 9 chr3 84878419 84879488 -133157670 + L1MC1 LINE L1 5260 6333 0 378 229 166 45 chr3 84879536 84879693 -133157465 - MIR SINE MIR -70 192 17 318 258 80 66 chr3 84879986 84880137 -133157021 + L1MDa LINE L1 1604 1756 -4784 766 177 0 16 chr3 84880140 84880264 -133156894 + FLAM_C SINE Alu 2 123 -20 257 0 30 0 chr3 84880264 84880297 -133156861 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 408 234 32 24 chr3 84880311 84880435 -133156723 + L1MDa LINE L1 1800 1924 -4616 * 1842 222 104 2 chr3 84880422 84880837 -133156321 + L1MDa LINE L1 9 465 -6075 1892 258 71 17 chr3 84880873 84881474 -133155684 + L1MDa LINE L1 2596 3293 -3247 261 0 0 0 chr3 84881474 84881503 -133155655 + (TA)n Simple_repeat Simple_repeat 1 29 0 1892 258 71 17 chr3 84881503 84881822 -133155336 + L1MDa LINE L1 3293 3593 -2947 2998 215 19 22 chr3 84881822 84881909 -133155249 + L1MDa LINE L1 1951 2037 -4684 1885 165 0 3 chr3 84881909 84882206 -133154952 + AluJb SINE Alu 1 296 -16 2998 215 19 22 chr3 84882206 84882887 -133154271 + L1MDa LINE L1 2037 2717 -4004 1902 163 3 0 chr3 84882947 84883242 -133153916 + AluJb SINE Alu 1 296 -16 188 91 30 30 chr3 84883251 84883284 -133153874 - L2 LINE L2 -14 3299 3267 2040 135 3 10 chr3 84883350 84883662 -133153496 + AluY SINE Alu 1 310 -1 234 150 0 0 chr3 84883672 84883712 -133153446 + (CA)n Simple_repeat Simple_repeat 1 40 0 10203 230 53 23 chr3 84883804 84886853 -133150305 + L1M4 LINE L1 2269 5411 -743 892 208 78 102 chr3 84886851 84886959 -133150199 + HAL1 LINE L1 1569 1678 -829 * 2264 101 0 0 chr3 84886959 84887246 -133149912 + AluSg SINE Alu 1 287 -23 892 208 78 102 chr3 84887246 84887537 -133149621 + HAL1 LINE L1 1678 1958 -549 291 265 146 38 chr3 84888618 84888803 -133148355 + MIR SINE MIR 10 214 -48 4295 197 33 9 chr3 84889168 84890335 -133146823 - L1MB7 LINE L1 -65 6119 4933 1348 226 0 4 chr3 84890648 84890887 -133146271 - MER8 DNA MER2_type 0 239 2 201 250 0 113 chr3 84891437 84891517 -133145641 - L2 LINE L2 -14 3299 3229 343 277 32 11 chr3 84892721 84892815 -133144343 - MIR3 SINE MIR -21 187 92 380 311 56 96 chr3 84893096 84893131 -133144027 + MIR SINE MIR 16 51 -211 1821 135 3 58 chr3 84893131 84893259 -133143899 + AluJb SINE Alu 1 134 -178 2478 71 3 0 chr3 84893259 84893555 -133143603 - AluY SINE Alu -14 297 1 1821 135 3 58 chr3 84893555 84893737 -133143421 + AluJb SINE Alu 134 294 -18 380 311 56 96 chr3 84893737 84893952 -133143206 + MIR SINE MIR 51 256 -6 1842 145 16 22 chr3 84894430 84894741 -133142417 + AluSq SINE Alu 1 309 -4 231 114 0 0 chr3 84894946 84894981 -133142177 + (CA)n Simple_repeat Simple_repeat 2 36 0 202 288 68 27 chr3 84895004 84895077 -133142081 + L2 LINE L2 3199 3274 -39 216 0 0 0 chr3 84895395 84895419 -133141739 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 218 180 40 0 chr3 84895494 84895544 -133141614 + (TA)n Simple_repeat Simple_repeat 1 52 0 22 0 0 0 chr3 84895802 84895824 -133141334 + AT_rich Low_complexity Low_complexity 1 22 0 684 301 55 52 chr3 84895913 84896123 -133141035 + L2 LINE L2 2431 2644 -670 1544 186 10 19 chr3 84896123 84896430 -133140728 - AluJb SINE Alu -8 304 1 684 301 55 52 chr3 84896430 84896564 -133140594 + L2 LINE L2 2644 2776 -538 402 235 250 8 chr3 84896713 84896845 -133140313 - MER5B DNA MER1_type -13 165 2 26 82 0 0 chr3 84897077 84897138 -133140020 + AT_rich Low_complexity Low_complexity 1 61 0 184 313 15 0 chr3 84897827 84897894 -133139264 + L2 LINE L2 3244 3311 -2 243 0 0 0 chr3 84897943 84897970 -133139188 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 2051 108 7 0 chr3 84897971 84898249 -133138909 - AluSx SINE Alu -32 280 1 454 343 7 0 chr3 84898408 84898554 -133138604 + MIR SINE MIR 6 152 -110 336 232 221 0 chr3 84900541 84900636 -133136522 - L2 LINE L2 -1 3271 3156 2035 109 86 42 chr3 84900677 84901036 -133136122 + THE1C LTR MaLR 1 375 0 226 226 16 0 chr3 84901298 84901360 -133135798 + L1MCa LINE L1 2006 2068 -4358 * 238 267 47 0 chr3 84901345 84901431 -133135727 - L1MC4 LINE L1 -1339 6703 6614 226 196 22 0 chr3 84901432 84901478 -133135680 + (TA)n Simple_repeat Simple_repeat 1 47 0 24 32 0 0 chr3 84901529 84901560 -133135598 + AT_rich Low_complexity Low_complexity 1 31 0 24 67 0 0 chr3 84901663 84901708 -133135450 + AT_rich Low_complexity Low_complexity 1 45 0 1713 161 13 29 chr3 84901708 84902018 -133135140 + AluJo SINE Alu 2 306 -6 1522 126 5 0 chr3 84902067 84902281 -133134877 + AluSg/x SINE Alu 81 295 -15 2086 119 3 22 chr3 84902296 84902614 -133134544 + AluSx SINE Alu 1 312 0 1025 181 90 30 chr3 84902621 84902887 -133134271 - AluJo SINE Alu -30 282 1 807 193 21 42 chr3 84903357 84903549 -133133609 + MER5A DNA MER1_type 1 188 -1 287 253 0 40 chr3 84903729 84903828 -133133330 - THE1B LTR MaLR -37 327 233 286 328 210 0 chr3 84904020 84904139 -133133019 - MER91A DNA MER1_type -44 152 9 243 280 0 0 chr3 84904149 84904199 -133132959 - MER91A DNA MER1_type -143 53 4 205 326 92 0 chr3 84904221 84904319 -133132839 - MIR3 SINE MIR -11 197 91 191 278 135 24 chr3 84904796 84904922 -133132236 - MIR SINE MIR -4 258 119 440 257 35 35 chr3 84906848 84906992 -133130166 + MIR SINE MIR 21 164 -98 22 0 0 0 chr3 84907169 84907191 -133129967 + AT_rich Low_complexity Low_complexity 1 22 0 1351 190 4 4 chr3 84908805 84909052 -133128106 + AluJo SINE Alu 40 286 -26 529 291 35 61 chr3 84909978 84910208 -133126950 - L2 LINE L2 0 3313 3090 216 171 0 0 chr3 84910244 84910285 -133126873 + (TG)n Simple_repeat Simple_repeat 2 42 0 24 32 0 0 chr3 84910872 84910903 -133126255 + AT_rich Low_complexity Low_complexity 1 31 0 343 317 72 87 chr3 84910918 84911319 -133125839 + L1ME4a LINE L1 5569 5963 -158 225 307 34 0 chr3 84911320 84911408 -133125750 + L1MC4 LINE L1 6615 6705 -1337 256 301 32 32 chr3 84911590 84911683 -133125475 - L2 LINE L2 -7 3306 3214 753 142 0 0 chr3 84911943 84912070 -133125088 + (TCCC)n Simple_repeat Simple_repeat 2 128 0 3203 186 45 16 chr3 84912495 84913178 -133123980 + MER54A LTR ERVL 1 703 -198 11720 56 8 8 chr3 84913555 84915081 -133122077 - L1P LINE L1 -4269 1877 351 198 143 0 0 chr3 84916258 84916286 -133120872 + MIR SINE MIR 22 49 -213 346 352 48 16 chr3 84916760 84917010 -133120148 + L3b LINE CR1 1156 1413 -170 2120 132 0 3 chr3 84917123 84917433 -133119725 - AluY SINE Alu -2 309 1 1319 61 0 6 chr3 84917496 84917659 -133119499 - L1PA5 LINE L1 -1 6153 5992 22 35 0 0 chr3 84917783 84917812 -133119346 + AT_rich Low_complexity Low_complexity 1 29 0 389 320 0 0 chr3 84918018 84918190 -133118968 + T-rich Low_complexity Low_complexity 1 172 0 330 191 235 26 chr3 84918972 84919087 -133118071 + L2 LINE L2 3175 3313 0 29 70 0 0 chr3 84921686 84921743 -133115415 + AT_rich Low_complexity Low_complexity 1 57 0 217 279 66 0 chr3 84925065 84925126 -133112032 + MIR SINE MIR 62 126 -136 1500 179 6 56 chr3 84925340 84925664 -133111494 + AluJo SINE Alu 1 308 -4 2141 112 6 10 chr3 84926245 84926558 -133110600 + AluSp SINE Alu 2 313 0 204 214 0 0 chr3 84926605 84926661 -133110497 + (TTAAA)n Simple_repeat Simple_repeat 1 56 0 450 264 0 9 chr3 84926857 84926967 -133110191 - MIR SINE MIR -1 261 153 1680 178 3 20 chr3 84928294 84928586 -133108572 + AluJo SINE Alu 1 287 -25 1127 150 4 80 chr3 84928956 84928999 -133108159 + AluJb SINE Alu 86 131 -181 2480 68 3 0 chr3 84928999 84929295 -133107863 - AluY SINE Alu -14 297 1 1127 150 4 80 chr3 84929295 84929477 -133107681 + AluJb SINE Alu 131 294 -18 472 325 89 0 chr3 84929529 84929698 -133107460 + MIR SINE MIR 79 262 0 361 235 92 83 chr3 84929848 84930065 -133107093 + MLT1J LTR MaLR 97 315 -196 581 209 176 14 chr3 84930380 84930528 -133106630 + MER5A DNA MER1_type 10 181 -8 297 394 13 0 chr3 84930554 84930709 -133106449 + L2 LINE L2 2659 2815 -499 345 240 55 41 chr3 84930840 84930986 -133106172 - L2 LINE L2 -48 3265 3118 259 322 108 23 chr3 84931293 84931507 -133105651 + MIR SINE MIR 9 240 -22 335 296 130 73 chr3 84931774 84931881 -133105277 - L1M2 LINE L1 -5616 1233 1133 372 43 0 0 chr3 84931881 84931927 -133105231 + (CGG)n Simple_repeat Simple_repeat 3 48 0 335 296 130 73 chr3 84931927 84932559 -133104599 - L1M2 LINE L1 -5716 1133 530 28 29 0 0 chr3 84933056 84933091 -133104067 + GC_rich Low_complexity Low_complexity 1 35 0 1780 156 0 14 chr3 84935479 84935762 -133101396 + AluJo SINE Alu 10 288 -24 24 53 0 0 chr3 84936359 84936397 -133100761 + AT_rich Low_complexity Low_complexity 1 38 0 317 197 92 0 chr3 84936588 84936664 -133100494 - L1ME LINE L1 -478 5643 5561 1772 133 21 28 chr3 84936710 84936995 -133100163 - AluSx SINE Alu -13 299 17 230 81 27 0 chr3 84937135 84937172 -133099986 + (TTCC)n Simple_repeat Simple_repeat 1 38 0 647 269 125 12 chr3 84938433 84938689 -133098469 + MLT1L LTR MaLR 291 575 -40 2346 96 10 0 chr3 84938981 84939283 -133097875 - AluSq SINE Alu -8 305 1 1580 185 73 0 chr3 84939283 84939569 -133097589 - AluSx SINE Alu -5 307 1 1447 178 40 25 chr3 84939593 84939906 -133097252 - AluJo SINE Alu 0 319 3 1874 166 3 0 chr3 84940080 84940364 -133096794 + AluSx SINE Alu 9 293 -19 438 257 116 38 chr3 84942458 84942504 -133094654 + LTR52 LTR ERVL 17 58 -363 186 43 0 0 chr3 84942504 84942527 -133094631 + (TC)n Simple_repeat Simple_repeat 2 24 0 438 257 116 38 chr3 84942527 84942766 -133094392 + LTR52 LTR ERVL 58 398 -23 2353 73 3 16 chr3 84942832 84943147 -133094011 + AluY SINE Alu 1 311 0 2407 78 0 0 chr3 84943164 84943473 -133093685 + AluY SINE Alu 1 309 -2 2218 96 0 0 chr3 84943475 84943781 -133093377 + AluSc SINE Alu 1 306 0 380 203 65 122 chr3 84944062 84944185 -133092973 - MLT1J LTR MaLR -325 186 71 796 144 64 0 chr3 84945138 84945263 -133091895 + FLAM_C SINE Alu 1 133 0 1759 94 79 4 chr3 84945358 84945612 -133091546 - AluSg SINE Alu -1 309 37 1467 160 94 14 chr3 84945751 84946026 -133091132 - AluSx SINE Alu -15 297 1 925 153 55 123 chr3 84946202 84946387 -133090771 + MER20 DNA MER1_type 1 168 -51 2306 109 3 3 chr3 84946387 84946699 -133090459 + AluSx SINE Alu 1 312 0 925 153 55 123 chr3 84946699 84946748 -133090410 + MER20 DNA MER1_type 168 219 0 421 300 0 18 chr3 84947512 84947622 -133089536 + MER5B DNA MER1_type 1 108 -70 456 67 0 0 chr3 84947716 84947776 -133089382 + (TA)n Simple_repeat Simple_repeat 2 61 0 1073 134 109 0 chr3 84947855 84948057 -133089101 + L1MA8 LINE L1 6062 6285 -6 1683 139 0 79 chr3 84948815 84949118 -133088040 - AluJb SINE Alu -33 279 1 464 267 21 89 chr3 84951141 84951197 -133085961 - MIR SINE MIR 0 262 204 2017 161 0 0 chr3 84951197 84951508 -133085650 - AluSx SINE Alu -1 311 1 464 267 21 89 chr3 84951508 84951642 -133085516 - MIR SINE MIR -58 204 85 1334 143 9 23 chr3 84953166 84953383 -133083775 + MER20 DNA MER1_type 1 214 -5 394 280 56 0 chr3 84953498 84953605 -133083553 - L2 LINE L2 0 3272 3160 214 384 121 0 chr3 84953985 84954084 -133083074 + L2 LINE L2 3150 3260 -12 517 227 70 16 chr3 84954227 84954355 -133082803 + MER69 DNA AcHobo 1 135 -1091 191 163 0 23 chr3 84954539 84954582 -133082576 + CT-rich Low_complexity Low_complexity 2 43 0 2115 141 0 16 chr3 84954592 84954905 -133082253 - AluSx SINE Alu -4 308 1 1057 118 0 0 chr3 84955240 84955384 -133081774 + L1MD1 LINE L1 6025 6168 -74 285 308 28 0 chr3 84955489 84955596 -133081562 - HAL1b LINE L1 -439 909 800 31 44 0 0 chr3 84955600 84955645 -133081513 + AT_rich Low_complexity Low_complexity 1 45 0 22 56 0 0 chr3 84955710 84955746 -133081412 + AT_rich Low_complexity Low_complexity 1 36 0 2200 60 0 8 chr3 84956161 84956464 -133080694 + AluY SINE Alu 21 321 0 1680 174 7 23 chr3 84957837 84958136 -133079022 - AluJo SINE Alu -18 294 1 21 95 0 0 chr3 84963318 84963381 -133073777 + GC_rich Low_complexity Low_complexity 1 63 0 29 78 0 0 chr3 84963546 84963610 -133073548 + GC_rich Low_complexity Low_complexity 1 64 0 220 269 0 0 chr3 84963848 84963900 -133073258 - L2 LINE L2 0 3272 3221 200 235 0 20 chr3 84964348 84964399 -133072759 - L2 LINE L2 0 3313 3264 492 236 67 45 chr3 84965710 84965888 -133071270 + MIR SINE MIR 81 262 0 250 341 24 65 chr3 84965944 84966067 -133071091 + L2 LINE L2 3137 3254 -18 225 213 64 53 chr3 84966259 84966353 -133070805 - MLT1J1 LTR MaLR -110 336 242 1245 222 69 58 chr3 84966375 84966856 -133070302 + MLT1C LTR MaLR 22 467 0 421 301 63 7 chr3 84966891 84967034 -133070124 - MLT1I LTR MaLR -246 163 13 555 374 52 18 chr3 84967247 84967533 -133069625 - L2 LINE L2 0 3272 2977 1891 160 10 10 chr3 84967541 84967853 -133069305 + AluJo SINE Alu 1 312 0 203 319 42 78 chr3 84967867 84968033 -133069125 - L2 LINE L2 -385 2929 2770 1318 249 93 103 chr3 84968162 84968296 -133068862 + L2 LINE L2 2400 2534 -779 324 18 18 36 chr3 84968296 84968351 -133068807 + (TTATA)n Simple_repeat Simple_repeat 4 57 0 1318 249 93 103 chr3 84968351 84969141 -133068017 + L2 LINE L2 2534 3309 -4 1910 126 25 11 chr3 84969291 84969604 -133067554 + AluSx SINE Alu 1 312 0 821 256 31 0 chr3 84969860 84970055 -133067103 + MER58A DNA MER1_type 24 224 0 196 132 0 53 chr3 84970272 84970310 -133066848 + MIR SINE MIR 220 255 -7 26 0 0 0 chr3 84970428 84970454 -133066704 + AT_rich Low_complexity Low_complexity 1 26 0 1647 143 58 41 chr3 84970454 84970747 -133066411 - AluJb SINE Alu -14 298 1 2211 106 7 7 chr3 84971521 84971823 -133065335 + AluSx SINE Alu 1 302 -10 561 55 0 0 chr3 84971969 84972042 -133065116 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 362 342 19 19 chr3 84972203 84972364 -133064794 - MIR SINE MIR -70 192 32 269 212 15 15 chr3 84972502 84972568 -133064590 + CT-rich Low_complexity Low_complexity 2 67 0 402 254 34 34 chr3 84972949 84973067 -133064091 - MER103 DNA DNA -47 119 2 310 319 132 7 chr3 84973239 84973383 -133063775 - MIR3 SINE MIR -42 166 5 2067 121 0 0 chr3 84974275 84974580 -133062578 + AluSx SINE Alu 1 305 0 230 182 13 104 chr3 84974680 84974757 -133062401 - L2 LINE L2 -5 3267 3198 652 278 0 19 chr3 84975283 84975445 -133061713 + MIR SINE MIR 30 188 -74 670 191 20 26 chr3 84975508 84975660 -133061498 + L1MC4a LINE L1 7658 7808 0 853 187 118 27 chr3 84976220 84976407 -133060751 + MER3 DNA MER1_type 1 204 -5 249 178 111 0 chr3 84976369 84976414 -133060744 - MER3 DNA MER1_type -119 90 41 * 271 305 0 11 chr3 84976587 84976682 -133060476 - MIR SINE MIR -2 260 167 300 317 50 8 chr3 84976697 84976817 -133060341 - MIR SINE MIR 0 262 138 227 241 0 35 chr3 84976795 84976853 -133060305 + MIR SINE MIR 56 111 -151 * 1297 244 14 4 chr3 84976921 84977224 -133059934 + AluJo SINE Alu 1 306 0 373 190 23 23 chr3 84977510 84977611 -133059547 - MLT1K LTR MaLR -8 580 507 668 286 48 37 chr3 84977748 84978021 -133059137 - MLT1K LTR MaLR -306 282 7 2040 149 0 16 chr3 84978865 84979180 -133057978 - AluSx SINE Alu -2 310 1 588 148 52 0 chr3 84979703 84979818 -133057340 - L1MA8 LINE L1 -2 6289 6169 2052 128 0 35 chr3 84979818 84980131 -133057027 - AluSx SINE Alu -10 302 1 759 89 9 9 chr3 84980131 84980243 -133056915 - L1MA8 LINE L1 -190 6101 5990 1187 159 63 5 chr3 84980335 84980542 -133056616 + MER20 DNA MER1_type 1 219 0 416 244 50 87 chr3 84980781 84981023 -133056135 - MLT1J LTR MaLR -3 508 276 521 86 0 0 chr3 84981174 84981244 -133055914 + MLT2B1 LTR ERVL 1 70 -450 1911 123 0 8 chr3 84981259 84981527 -133055631 - AluSx SINE Alu -31 281 16 573 300 94 75 chr3 84981564 84982041 -133055117 + LTR16A1 LTR ERVL 1 486 -5 232 267 0 0 chr3 84982056 84982101 -133055057 + L2 LINE L2 3248 3292 -21 2016 139 3 10 chr3 84982227 84982529 -133054629 - AluSx SINE Alu -12 300 1 2237 128 0 0 chr3 84982735 84983048 -133054110 - AluSq SINE Alu 0 313 1 2342 127 48 11 chr3 84983431 84983802 -133053356 + MSTA LTR MaLR 44 428 0 464 237 8 42 chr3 84983811 84983929 -133053229 + MIR SINE MIR 29 142 -120 407 269 15 22 chr3 84983910 84984044 -133053114 + L2 LINE L2 3181 3313 0 * 193 194 0 0 chr3 84984141 84984177 -133052981 + MIR SINE MIR 223 258 -4 790 242 0 0 chr3 84984280 84984433 -133052725 + FRAM SINE Alu 17 169 -7 25 31 0 0 chr3 84984441 84984473 -133052685 + AT_rich Low_complexity Low_complexity 1 32 0 2371 71 3 3 chr3 84984649 84984943 -133052215 - AluSc SINE Alu -15 294 1 2066 135 0 3 chr3 84985288 84985591 -133051567 - AluJb SINE Alu -10 302 1 1590 196 4 4 chr3 84985596 84985926 -133051232 - AluJb SINE Alu 0 330 1 472 306 32 32 chr3 84986079 84986295 -133050863 - MIR SINE MIR -33 229 14 2137 193 12 14 chr3 84986301 84986720 -133050438 + L1PB4 LINE L1 5738 6155 -1 313 184 325 9 chr3 84986919 84987033 -133050125 - L2 LINE L2 0 3313 3164 586 311 107 52 chr3 84988085 84988779 -133048379 - L2 LINE L2 -721 2593 1862 373 220 167 43 chr3 84988927 84989027 -133048131 + L2 LINE L2 3103 3189 -124 2164 107 0 0 chr3 84989027 84989308 -133047850 + AluSc SINE Alu 27 307 -2 373 220 167 43 chr3 84989308 84989393 -133047765 + L2 LINE L2 3189 3311 -2 369 250 0 11 chr3 84990427 84990515 -133046643 - MLT1I LTR MaLR -16 393 307 1476 253 49 33 chr3 84990612 84991099 -133046059 + L1ME LINE L1 110 604 -5466 55 83 0 0 chr3 84991442 84991574 -133045584 + AT_rich Low_complexity Low_complexity 1 132 0 1581 147 78 17 chr3 84994063 84994356 -133042802 + AluJo SINE Alu 1 311 -1 443 236 96 51 chr3 84994532 84994744 -133042414 + MIR SINE MIR 32 262 0 302 134 12 134 chr3 84994753 84994813 -133042345 - MLT2D LTR ERVL 0 464 438 414 0 0 0 chr3 84994813 84994859 -133042299 + (TG)n Simple_repeat Simple_repeat 2 47 0 302 134 12 134 chr3 84994859 84994880 -133042278 - MLT2D LTR ERVL -26 438 416 2032 184 28 8 chr3 84994997 84995384 -133041774 - MLT2D LTR ERVL -19 395 1 594 256 24 18 chr3 84995464 84995628 -133041530 - MIR SINE MIR -21 241 77 371 176 39 110 chr3 84996057 84996129 -133041029 - Charlie7 DNA MER1_type -27 2585 2509 1935 152 0 0 chr3 84996129 84996419 -133040739 + AluSx SINE Alu 1 290 -22 371 176 39 110 chr3 84996419 84996528 -133040630 - Charlie7 DNA MER1_type -103 2509 2417 342 205 23 78 chr3 84996772 84996958 -133040200 + MIR SINE MIR 5 252 -10 366 191 83 0 chr3 84997126 84997210 -133039948 + MER113 DNA MER1_type? 14 104 -417 23 0 0 0 chr3 84997529 84997552 -133039606 + AT_rich Low_complexity Low_complexity 1 23 0 2233 74 0 37 chr3 84997552 84997848 -133039310 - AluSg SINE Alu -25 285 1 23 33 0 0 chr3 84997921 84997951 -133039207 + AT_rich Low_complexity Low_complexity 1 30 0 826 173 77 13 chr3 84998207 84998363 -133038795 - AluJo SINE Alu -17 295 130 3803 130 21 39 chr3 84998375 84998992 -133038166 + L1PA16 LINE L1 5552 6157 -9 790 168 23 8 chr3 84998993 84999124 -133038034 - AluJo SINE Alu -169 133 1 1252 132 66 38 chr3 84999565 84999778 -133037380 - MER20 DNA MER1_type 0 219 1 315 292 22 15 chr3 85000935 85001072 -133036086 - L1MC/D LINE L1 -1976 5832 5695 203 245 0 0 chr3 85001536 85001585 -133035573 + (TG)n Simple_repeat Simple_repeat 2 50 0 32 0 0 0 chr3 85001695 85001727 -133035431 + AT_rich Low_complexity Low_complexity 1 32 0 386 284 53 58 chr3 85001979 85002169 -133034989 - MER112 DNA MER1_type -20 240 52 1717 142 7 65 chr3 85002208 85002517 -133034641 + AluSx SINE Alu 1 291 -21 713 272 78 47 chr3 85003031 85003626 -133033532 - L2 LINE L2 -1 3312 2668 1040 53 0 30 chr3 85004635 85004766 -133032392 + L1PA8 LINE L1 6045 6171 -1 1753 191 14 0 chr3 85005405 85005699 -133031459 + 7SLRNA srpRNA srpRNA 1 298 -22 248 306 20 0 chr3 85006029 85006127 -133031031 - L1ME LINE L1 -300 5870 5771 2228 99 0 0 chr3 85006127 85006436 -133030722 - AluSx SINE Alu 0 309 1 609 234 107 30 chr3 85006439 85006636 -133030522 - MLT1K LTR MaLR -12 576 365 450 0 0 0 chr3 85006718 85006768 -133030390 + (GA)n Simple_repeat Simple_repeat 1 50 0 309 350 49 0 chr3 85007111 85007274 -133029884 + MIR SINE MIR 20 190 -72 579 205 18 9 chr3 85008584 85008696 -133028462 + MER81 DNA DNA 1 113 -1 447 270 91 85 chr3 85008707 85009070 -133028088 + MLT1H LTR MaLR 23 387 -162 384 282 126 10 chr3 85009168 85009271 -133027887 - L2 LINE L2 -4 3268 3154 1671 230 5 34 chr3 85009281 85009664 -133027494 + Charlie1a DNA MER1_type 37 408 -1047 241 276 47 8 chr3 85009682 85009809 -133027349 + L1 LINE L1 4922 5053 -1093 274 316 63 86 chr3 85010518 85010692 -133026466 - MER91A DNA MER1_type -26 170 1 1197 215 23 9 chr3 85010893 85011112 -133026046 + MER58A DNA MER1_type 3 224 0 733 236 44 16 chr3 85011555 85011737 -133025421 + MIR SINE MIR 21 207 -55 1660 150 17 31 chr3 85011765 85012052 -133025106 - AluJb SINE Alu -14 298 16 1525 150 130 7 chr3 85012152 85012445 -133024713 - LTR1B LTR ERV1 -497 329 1 1545 273 90 26 chr3 85012478 85013020 -133024138 - MLT1G1 LTR MaLR -12 583 7 1015 166 0 50 chr3 85013327 85013508 -133023650 - AluY SINE Alu -6 305 134 426 264 35 24 chr3 85013845 85014020 -133023138 + MIR SINE MIR 1 174 -61 1386 128 0 0 chr3 85014326 85014521 -133022637 + AluSp SINE Alu 116 310 -3 827 165 85 11 chr3 85014955 85015131 -133022027 - MER53 DNA DNA 0 189 1 202 287 27 15 chr3 85015660 85015745 -133021413 - MIR SINE MIR -57 151 98 4364 107 2 0 chr3 85015763 85016316 -133020842 + MER41A LTR ERV1 1 554 0 2378 137 49 6 chr3 85017571 85017921 -133019237 + MLT1A1 LTR MaLR 1 365 0 879 309 74 18 chr3 85018245 85018581 -133018577 + MLT1K LTR MaLR 234 588 0 1117 259 64 15 chr3 85018776 85019119 -133018039 - LTR16C LTR ERVL -3 488 129 1478 192 47 38 chr3 85019660 85020078 -133017080 - LTR1B LTR ERV1 0 824 374 2516 125 18 38 chr3 85020178 85020245 -133016913 + MER4A LTR ERV1 59 126 -538 216 0 0 0 chr3 85020245 85020269 -133016889 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 2516 125 18 38 chr3 85020269 85020752 -133016406 + MER4A LTR ERV1 126 664 0 570 303 103 13 chr3 85021655 85021889 -133015269 - MIR SINE MIR 0 262 8 1259 211 48 69 chr3 85022159 85022577 -133014581 - MER31B LTR ERV1 0 466 58 202 139 0 23 chr3 85022577 85022620 -133014538 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 250 178 44 0 chr3 85022628 85022673 -133014485 - MER31B LTR ERV1 -419 47 1 * 1366 155 68 94 chr3 85022673 85022934 -133014224 + MLT1B LTR MaLR 23 221 -169 3129 119 12 0 chr3 85022934 85023363 -133013795 - MER57B LTR ERV1 0 434 1 1366 155 68 94 chr3 85023363 85023529 -133013629 + MLT1B LTR MaLR 221 390 0 840 161 8 0 chr3 85023544 85023674 -133013484 - FLAM_A SINE Alu -1 132 2 282 275 56 42 chr3 85024210 85024352 -133012806 + MIR SINE MIR 78 221 -41 1946 115 4 15 chr3 85024408 85024677 -133012481 + AluSx SINE Alu 1 266 -46 1485 234 0 0 chr3 85024818 85025122 -133012036 - AluJo SINE Alu -8 304 1 1096 175 0 0 chr3 85025587 85025764 -133011394 + AluJb SINE Alu 134 310 -2 336 187 264 0 chr3 85025785 85025876 -133011282 - LTR16C LTR ERVL -178 313 199 266 146 0 0 chr3 85026117 85026165 -133010993 + U5 snRNA snRNA 1 48 -68 414 249 70 32 chr3 85026350 85026535 -133010623 + L2 LINE L2 2818 3009 -263 672 309 50 11 chr3 85026906 85027188 -133009970 + L1MC4 LINE L1 6721 7013 -1029 * 2097 162 12 17 chr3 85027182 85027589 -133009569 + L1MB1 LINE L1 4140 4544 -1602 628 160 0 0 chr3 85027592 85027686 -133009472 - Tigger7 DNA MER2_type -4 2483 2390 * 1426 209 15 22 chr3 85027684 85027952 -133009206 - Tigger7 DNA MER2_type -284 266 1 1933 161 65 51 chr3 85027952 85028386 -133008772 + L1MB1 LINE L1 4542 4981 -1165 1121 166 50 12 chr3 85028389 85028630 -133008528 + L1MB1 LINE L1 5710 5959 -209 742 168 0 30 chr3 85028630 85028761 -133008397 + FLAM_A SINE Alu 7 133 -9 740 167 56 121 chr3 85028764 85028979 -133008179 + L1MB1 LINE L1 5967 6167 -1 21 71 0 0 chr3 85028979 85029021 -133008137 + AT_rich Low_complexity Low_complexity 1 42 0 475 255 42 52 chr3 85029092 85029304 -133007854 + L1MC5 LINE L1 6999 7208 -753 763 235 29 146 chr3 85029381 85029900 -133007258 - MLT1H LTR MaLR 0 549 92 1120 177 30 5 chr3 85029908 85030106 -133007052 + MER3 DNA MER1_type 7 209 0 241 279 115 29 chr3 85030112 85030450 -133006708 + L1MC4 LINE L1 7266 7736 -306 1389 159 46 13 chr3 85030500 85030582 -133006576 + AluJb SINE Alu 45 123 -189 198 0 0 0 chr3 85030582 85030604 -133006554 + (CAA)n Simple_repeat Simple_repeat 3 24 0 1389 159 46 13 chr3 85030604 85030760 -133006398 + AluJb SINE Alu 123 291 -21 23 0 0 0 chr3 85031651 85031674 -133005484 + AT_rich Low_complexity Low_complexity 1 23 0 2568 117 27 8 chr3 85033274 85033642 -133003516 + THE1C LTR MaLR 1 375 0 318 274 247 7 chr3 85035240 85035386 -133001772 + MIR SINE MIR 61 241 -21 492 256 75 94 chr3 85035499 85035765 -133001393 + MLT1K LTR MaLR 67 327 -261 2120 284 33 22 chr3 85035796 85036434 -133000724 - MLT2F LTR ERVL 0 663 19 418 189 19 57 chr3 85036474 85036580 -133000578 + MLT1K LTR MaLR 410 511 -77 547 91 0 0 chr3 85036615 85036692 -133000466 - Alu SINE Alu -4 305 229 325 261 92 65 chr3 85037759 85037943 -132999215 - L3 LINE CR1 -547 1030 842 189 0 0 0 chr3 85038008 85038029 -132999129 + (A)n Simple_repeat Simple_repeat 1 21 0 481 324 95 0 chr3 85038109 85038331 -132998827 + L2 LINE L2 2529 2771 -543 1363 201 81 92 chr3 85038331 85038550 -132998608 + Tigger2a DNA MER2_type 1 214 -2494 1650 192 3 0 chr3 85038550 85038862 -132998296 - AluSp SINE Alu 0 313 1 1363 201 81 92 chr3 85038862 85039075 -132998083 + Tigger2a DNA MER2_type 214 428 -6 204 40 0 0 chr3 85039272 85039297 -132997861 + (T)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr3 85039385 85039408 -132997750 + AT_rich Low_complexity Low_complexity 1 23 0 2009 148 0 3 chr3 85040016 85040313 -132996845 + AluSx SINE Alu 3 298 -14 651 254 72 53 chr3 85040316 85040525 -132996633 + MIR SINE MIR 29 241 -21 763 263 143 43 chr3 85040769 85041119 -132996039 - LTR33A LTR ERVL -30 493 109 1277 245 89 65 chr3 85041224 85041519 -132995639 + MLT1K LTR MaLR 3 314 -162 2216 109 3 0 chr3 85041519 85041821 -132995337 + AluSx SINE Alu 1 303 -9 1277 245 89 65 chr3 85041821 85041986 -132995172 + MLT1K LTR MaLR 314 474 -2 29 28 0 0 chr3 85042451 85042487 -132994671 + AT_rich Low_complexity Low_complexity 1 36 0 346 267 11 0 chr3 85042501 85042591 -132994567 - MIR SINE MIR -84 178 88 212 313 180 0 chr3 85043189 85043317 -132993841 + L2 LINE L2 3082 3232 -40 230 157 157 0 chr3 85043656 85043707 -132993451 - L2 LINE L2 0 3272 3214 405 301 151 19 chr3 85043809 85044015 -132993143 - MIR SINE MIR -28 234 2 463 268 47 0 chr3 85044713 85044840 -132992318 + MIR SINE MIR 48 180 -82 2874 7 0 0 chr3 85045089 85045398 -132991760 + AluYa5 SINE Alu 1 309 -2 27 49 0 0 chr3 85045932 85045973 -132991185 + AT_rich Low_complexity Low_complexity 1 41 0 491 214 126 31 chr3 85045991 85046150 -132991008 + MIR SINE MIR 45 218 -44 263 196 54 0 chr3 85046184 85046240 -132990918 - MLT1K LTR MaLR -7 581 523 200 288 17 0 chr3 85046241 85046300 -132990858 - MIR SINE MIR 0 262 203 843 261 90 67 chr3 85046315 85046702 -132990456 - MLT1K LTR MaLR -55 533 138 2518 80 3 0 chr3 85046831 85047143 -132990015 - AluSp SINE Alu 0 313 1 1132 175 94 5 chr3 85047143 85047358 -132989800 + Tigger2 DNA MER2_type 2477 2714 -4 291 223 50 79 chr3 85047623 85047762 -132989396 + L2 LINE L2 3083 3217 -96 498 188 131 38 chr3 85047797 85047957 -132989201 + LTR33 LTR ERVL 341 515 -6 182 301 129 0 chr3 85049114 85049207 -132987951 - L2 LINE L2 -10 3303 3199 * 765 209 117 5 chr3 85049199 85049405 -132987753 - MIR SINE MIR -21 241 13 1820 155 24 111 chr3 85049406 85049722 -132987436 - MLT2D LTR ERVL -2 412 145 2057 132 3 7 chr3 85049722 85050032 -132987126 + AluSx SINE Alu 2 310 -2 1820 155 24 111 chr3 85050032 85050166 -132986992 - MLT2D LTR ERVL -269 145 1 1305 196 114 88 chr3 85050171 85050626 -132986532 + MLT1C LTR MaLR 1 467 0 666 259 37 32 chr3 85050795 85051011 -132986147 - MLT2F LTR ERVL -7 656 440 1758 146 58 4 chr3 85051481 85051756 -132985402 - AluJb SINE Alu -22 290 1 423 270 45 0 chr3 85052139 85052250 -132984908 - L2 LINE L2 -2 3270 3155 196 341 0 24 chr3 85052330 85052415 -132984743 + MIR SINE MIR 40 122 -140 286 248 118 39 chr3 85052438 85052591 -132984567 - MIR SINE MIR -3 259 95 272 178 22 33 chr3 85053136 85053226 -132983932 + GA-rich Low_complexity Low_complexity 3 91 0 264 167 260 0 chr3 85053569 85053665 -132983493 + MER5C DNA MER1_type 2 122 -202 413 255 26 10 chr3 85053866 85054028 -132983130 + MIR SINE MIR 98 261 -1 204 329 27 0 chr3 85055106 85055179 -132981979 + GA-rich Low_complexity Low_complexity 5 79 0 1683 154 56 131 chr3 85056435 85056902 -132980256 + MSTB1 LTR MaLR 1 432 0 377 300 0 0 chr3 85056961 85057071 -132980087 + MER34 LTR ERV1 1 110 -432 2395 178 111 18 chr3 85057071 85057194 -132979964 + L1M4 LINE L1 4728 4838 -1346 1830 153 3 34 chr3 85057194 85057488 -132979670 - AluJb SINE Alu -27 285 1 2395 178 111 18 chr3 85057488 85058100 -132979058 + L1M4 LINE L1 4838 5515 -669 3663 126 0 6 chr3 85058676 85059206 -132977952 - MER1A DNA MER1_type 0 527 1 331 222 9 9 chr3 85059303 85059411 -132977747 + GA-rich Low_complexity Low_complexity 2 109 0 2356 189 52 45 chr3 85059641 85060195 -132976963 - MER74A LTR ERVL 0 558 1 3380 221 80 34 chr3 85061023 85062254 -132974904 + L1MDb LINE L1 824 2067 -4339 5549 121 31 8 chr3 85062330 85063181 -132973977 + L1PA13 LINE L1 5287 6156 -7 22 0 0 0 chr3 85063181 85063203 -132973955 + AT_rich Low_complexity Low_complexity 1 22 0 444 176 22 0 chr3 85063313 85063404 -132973754 + L1MDb LINE L1 3037 3129 -3277 4181 234 35 5 chr3 85063412 85064694 -132972464 + L1ME1 LINE L1 2116 3391 -2824 3826 240 72 33 chr3 85064735 85064932 -132972226 + L1ME1 LINE L1 3579 3767 -2448 2393 102 47 11 chr3 85064932 85065294 -132971864 + THE1C LTR MaLR 1 375 0 3826 240 72 33 chr3 85065294 85065815 -132971343 + L1ME1 LINE L1 3767 4266 -1949 218 54 0 27 chr3 85065815 85065852 -132971306 + (CA)n Simple_repeat Simple_repeat 2 37 0 3826 240 72 33 chr3 85065852 85066431 -132970727 + L1ME1 LINE L1 4266 4928 -1287 575 244 108 11 chr3 85066432 85066608 -132970550 - L1ME2 LINE L1 -2 6162 5970 2007 223 78 73 chr3 85066615 85067890 -132969268 + L1ME1 LINE L1 4923 6212 -23 239 278 56 0 chr3 85068109 85068163 -132968995 - MER5A DNA MER1_type 0 189 129 207 0 0 0 chr3 85068163 85068186 -132968972 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 239 278 56 0 chr3 85068186 85068203 -132968955 - MER5A DNA MER1_type -60 129 114 212 184 0 0 chr3 85068821 85068859 -132968299 + A-rich Low_complexity Low_complexity 1 38 0 4226 135 24 70 chr3 85069423 85069608 -132967550 + L1MC2 LINE L1 5550 5742 -602 1997 149 10 0 chr3 85069608 85069896 -132967262 + AluSq SINE Alu 1 291 -22 4226 135 24 70 chr3 85069896 85070186 -132966972 + L1MC2 LINE L1 5742 5974 -370 2221 93 7 7 chr3 85070186 85070486 -132966672 + AluSq SINE Alu 1 300 -13 4226 135 24 70 chr3 85070486 85070833 -132966325 + L1MC2 LINE L1 5974 6335 -9 188 310 84 0 chr3 85071094 85071165 -132965993 + MIR SINE MIR 88 164 -98 375 265 8 8 chr3 85071177 85071294 -132965864 - L2 LINE L2 -6 3307 3191 191 275 0 0 chr3 85071326 85071366 -132965792 + L2 LINE L2 3256 3295 -18 1893 148 0 48 chr3 85071981 85072291 -132964867 - AluJb SINE Alu -17 295 1 304 292 107 18 chr3 85072673 85072841 -132964317 - MIR SINE MIR -13 249 67 4185 89 9 2 chr3 85072958 85073508 -132963650 - MER41A LTR ERV1 0 554 1 324 239 85 39 chr3 85074039 85074169 -132962989 + MIR SINE MIR 45 180 -82 402 236 29 57 chr3 85074448 85074588 -132962570 + MIR SINE MIR 124 259 -3 252 276 112 10 chr3 85075302 85075400 -132961758 + MIR SINE MIR 98 205 -57 2018 193 58 0 chr3 85075757 85076156 -132961002 - MER63B DNA MER1_type -14 422 1 1842 115 65 0 chr3 85076290 85076585 -132960573 + AluSq SINE Alu 6 317 0 411 187 87 34 chr3 85077067 85077186 -132959972 + MLT1H LTR MaLR 1 164 -385 386 307 37 31 chr3 85078134 85078297 -132958861 + L1MEc LINE L1 235 398 -5998 1580 171 11 14 chr3 85078444 85078719 -132958439 - AluJb SINE Alu 0 312 39 1925 256 72 60 chr3 85078894 85079522 -132957636 + L1MEc LINE L1 656 1275 -5121 1990 127 0 0 chr3 85079522 85079790 -132957368 + AluSx SINE Alu 38 305 -7 1925 256 72 60 chr3 85079790 85080392 -132956766 + L1MEc LINE L1 1275 1868 -4528 1722 161 14 18 chr3 85080392 85080672 -132956486 + AluJo SINE Alu 1 279 -33 1925 256 72 60 chr3 85080672 85080699 -132956459 + L1MEc LINE L1 1868 1893 -4503 360 0 0 0 chr3 85080699 85080739 -132956419 + (CAA)n Simple_repeat Simple_repeat 3 42 0 1925 256 72 60 chr3 85080739 85080881 -132956277 + L1MEc LINE L1 1893 2074 -4322 3135 267 92 20 chr3 85082399 85082517 -132954641 + L2 LINE L2 1495 1603 -1711 1217 248 29 38 chr3 85082517 85082820 -132954338 + MER58B DNA MER1_type 1 302 -2118 1898 144 34 0 chr3 85082820 85083111 -132954047 + AluSx SINE Alu 1 301 -11 1217 248 29 38 chr3 85083111 85083150 -132954008 + MER58B DNA MER1_type 302 340 -1 3135 267 92 20 chr3 85083150 85083183 -132953975 + L2 LINE L2 1603 1632 -1682 1496 223 94 44 chr3 85083183 85083664 -132953494 + MLT1D LTR MaLR 1 505 0 3135 267 92 20 chr3 85083664 85084715 -132952443 + L2 LINE L2 1632 2785 -529 619 274 147 38 chr3 85085082 85085374 -132951784 + MER115 DNA AcHobo 35 358 -335 356 127 0 0 chr3 85085472 85085527 -132951631 - MLT2B1 LTR ERVL -2 518 464 196 188 12 35 chr3 85085528 85085613 -132951545 + (TA)n Simple_repeat Simple_repeat 1 83 0 311 111 0 0 chr3 85085614 85085659 -132951499 + Alu SINE Alu 253 297 -5 2639 45 0 13 chr3 85085824 85086135 -132951023 + AluY SINE Alu 1 307 -4 622 155 10 10 chr3 85086420 85086523 -132950635 - AluSg/x SINE Alu -16 296 194 273 244 34 128 chr3 85087224 85087490 -132949668 - MLT1K LTR MaLR -25 563 323 332 290 0 10 chr3 85087966 85088066 -132949092 + L1ME LINE L1 5707 5805 -316 1721 148 0 4 chr3 85088246 85088545 -132948613 - AluJo SINE Alu 0 323 26 367 280 0 10 chr3 85088770 85088870 -132948288 - MIR SINE MIR -104 158 60 410 213 0 19 chr3 85089105 85089213 -132947945 - MIR3 SINE MIR -32 176 71 953 264 35 17 chr3 85089850 85090217 -132946941 + LTR16C LTR ERVL 76 489 -2 2176 102 0 20 chr3 85090330 85090624 -132946534 - AluSg SINE Alu -22 288 1 482 195 60 60 chr3 85140836 85140985 -132896173 - MLT2F LTR ERVL -514 149 1 1524 216 24 18 chr3 85140993 85141331 -132895827 - MLT1F1 LTR MaLR -222 345 6 393 331 51 22 chr3 85141529 85141675 -132895483 - L2 LINE L2 -509 2805 2655 185 312 152 24 chr3 85141675 85141800 -132895358 + MIR3 SINE MIR 3 143 -65 362 243 229 14 chr3 85142181 85142321 -132894837 + MLT1K LTR MaLR 416 585 -3 211 333 31 21 chr3 85144497 85144593 -132892565 - MIR SINE MIR -108 154 58 905 212 94 97 chr3 85144950 85145071 -132892087 - MER31B LTR ERV1 -11 455 335 1201 218 72 44 chr3 85145071 85145503 -132891655 - LTR56 LTR ERV1 -1 444 1 905 212 94 97 chr3 85145503 85145721 -132891437 - MER31B LTR ERV1 -131 335 117 325 25 0 0 chr3 85145721 85145761 -132891397 - MLT2A1 LTR ERVL 0 444 405 522 0 0 0 chr3 85145761 85145819 -132891339 + (TA)n Simple_repeat Simple_repeat 2 59 0 520 201 146 43 chr3 85145927 85146091 -132891067 - MER21B LTR ERV1 -395 468 288 935 190 14 51 chr3 85146093 85146309 -132890849 - MER21B LTR ERV1 -529 334 127 1365 157 82 54 chr3 85146516 85146917 -132890241 - MER39 LTR ERV1 -269 438 1 312 267 35 111 chr3 85146918 85147014 -132890144 - L2 LINE L2 -254 3059 2980 1126 159 26 86 chr3 85147014 85147247 -132889911 + MER20 DNA MER1_type 1 219 0 312 267 35 111 chr3 85147247 85147322 -132889836 - L2 LINE L2 -333 2980 2901 1067 85 0 0 chr3 85147492 85147622 -132889536 + AluSq/x SINE Alu 1 130 -183 348 280 147 14 chr3 85147646 85147864 -132889294 - LTR52 LTR ERVL -108 313 67 627 161 15 23 chr3 85147894 85148024 -132889134 + SVA Other Other 475 603 -783 563 191 89 34 chr3 85148129 85148338 -132888820 - MER106B DNA MER1_type -25 1034 1 1945 196 137 21 chr3 85148351 85148820 -132888338 + MLT1F LTR MaLR 18 540 -2 801 128 64 0 chr3 85148861 85148986 -132888172 + AluJo/FLAM SINE Alu 1 133 -169 261 80 160 0 chr3 85148937 85148987 -132888171 + FLAM_A SINE Alu 76 133 0 235 70 23 23 chr3 85148996 85149039 -132888119 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 1744 183 17 52 chr3 85149271 85149620 -132887538 + MER21B LTR ERV1 450 786 -77 1773 132 7 11 chr3 85149709 85149989 -132887169 + MER39 LTR ERV1 429 707 0 401 272 25 68 chr3 85150005 85150167 -132886991 + L2 LINE L2 3158 3312 -1 24 32 0 0 chr3 85150207 85150238 -132886920 + AT_rich Low_complexity Low_complexity 1 31 0 226 295 105 19 chr3 85151053 85151158 -132886000 - L3b LINE CR1 -158 1425 1312 640 252 74 99 chr3 85151467 85152023 -132885135 + MER34 LTR ERV1 1 542 0 243 240 20 0 chr3 85152055 85152105 -132885053 + Charlie8 DNA MER1_type 33 83 -2334 229 170 0 38 chr3 85152285 85152338 -132884820 + MLT2F LTR ERVL 613 663 0 * 1173 202 4 26 chr3 85152338 85152570 -132884588 + MLT1F LTR MaLR 316 542 0 349 271 21 49 chr3 85152643 85152787 -132884371 + L2 LINE L2 3118 3257 -56 613 304 58 11 chr3 85152794 85152985 -132884173 + MIR SINE MIR 61 260 -2 208 329 79 0 chr3 85153216 85153292 -132883866 - L2 LINE L2 -10 3262 3181 1031 179 80 31 chr3 85153703 85153927 -132883231 + MIR SINE MIR 2 236 -26 752 293 32 35 chr3 85153938 85154249 -132882909 - MLT1I LTR MaLR 0 409 100 538 274 37 53 chr3 85154491 85154681 -132882477 - MER20B DNA MER1_type -595 188 2 2171 101 13 0 chr3 85154813 85155111 -132882047 + AluSx SINE Alu 1 302 -10 367 154 0 0 chr3 85155116 85155168 -132881990 + Alu SINE Alu 1 52 -250 403 281 36 29 chr3 85155168 85155307 -132881851 + MIR SINE MIR 53 192 -70 1493 153 43 0 chr3 85155307 85155562 -132881596 + AluJb SINE Alu 1 266 -46 253 246 29 0 chr3 85155676 85155745 -132881413 + MLT1K LTR MaLR 512 582 -6 23 0 0 0 chr3 85155776 85155799 -132881359 + AT_rich Low_complexity Low_complexity 1 23 0 426 294 44 33 chr3 85156293 85156473 -132880685 + MER5A DNA MER1_type 2 183 -6 192 302 19 0 chr3 85156501 85156554 -132880604 + MIR SINE MIR 48 101 -161 1116 151 44 5 chr3 85156623 85156828 -132880330 - AluJb SINE Alu -14 298 86 1984 117 3 7 chr3 85156860 85157151 -132880007 - AluSx SINE Alu -22 290 1 239 241 17 0 chr3 85157199 85157257 -132879901 + MER117 DNA MER1_type 1 59 -138 3130 141 14 16 chr3 85157281 85157777 -132879381 + Tigger7 DNA MER2_type 28 522 -1965 384 244 12 0 chr3 85157781 85157867 -132879291 + Tigger7 DNA MER2_type 2401 2487 0 498 273 107 48 chr3 85157955 85158226 -132878932 + L2 LINE L2 3027 3313 0 448 138 11 11 chr3 85158397 85158491 -132878667 + GA-rich Low_complexity Low_complexity 2 95 0 214 259 74 143 chr3 85158911 85159044 -132878114 + MIR SINE MIR 62 176 -86 821 233 104 0 chr3 85159044 85159087 -132878071 - MER20 DNA MER1_type -4 215 178 456 19 0 0 chr3 85159087 85159140 -132878018 + (TG)n Simple_repeat Simple_repeat 2 54 0 821 233 104 0 chr3 85159140 85159289 -132877869 - MER20 DNA MER1_type -41 178 3 214 259 74 143 chr3 85159289 85159371 -132877787 + MIR SINE MIR 176 262 0 372 273 67 51 chr3 85159433 85159610 -132877548 - MIR SINE MIR 0 262 15 2120 247 84 4 chr3 85159610 85160157 -132877001 - MLT1E LTR MaLR 0 593 3 372 273 67 51 chr3 85160157 85160172 -132876986 - MIR SINE MIR -247 15 2 1193 223 74 30 chr3 85160265 85160453 -132876705 - MLT1A2 LTR MaLR 0 374 167 342 0 0 0 chr3 85160453 85160491 -132876667 + (GA)n Simple_repeat Simple_repeat 2 39 0 1193 223 74 30 chr3 85160491 85160598 -132876560 - MLT1A2 LTR MaLR -207 167 66 415 213 11 32 chr3 85160650 85160744 -132876414 + L1MC4 LINE L1 6614 6705 -1337 309 219 10 73 chr3 85160777 85160873 -132876285 + L1MC4 LINE L1 6614 6703 -1339 324 196 33 54 chr3 85160878 85160970 -132876188 + L1MC4 LINE L1 6614 6703 -1339 305 233 11 67 chr3 85160973 85161063 -132876095 + L1MC4 LINE L1 6616 6700 -1342 261 54 0 0 chr3 85161088 85161106 -132876052 + (TA)n Simple_repeat Simple_repeat 2 19 -19 180 0 0 0 chr3 85161106 85161126 -132876032 + (GA)n Simple_repeat Simple_repeat 2 21 0 261 54 0 0 chr3 85161126 85161144 -132876014 + (TA)n Simple_repeat Simple_repeat 18 38 0 1719 176 0 3 chr3 85161144 85161428 -132875730 - AluJb SINE Alu -29 283 1 199 341 71 0 chr3 85161436 85161521 -132875637 + L2 LINE L2 3181 3271 -1 233 284 25 12 chr3 85161694 85161775 -132875383 + MIR SINE MIR 104 185 -77 1311 256 32 13 chr3 85162075 85162507 -132874651 - LTR16C LTR ERVL 0 491 3 234 123 14 41 chr3 85163004 85163077 -132874081 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 2077 124 56 34 chr3 85163098 85163454 -132873704 - THE1B LTR MaLR 0 364 1 12480 72 14 0 chr3 85163454 85165013 -132872145 - THE1B-int LTR MaLR 0 1580 1 2164 125 51 34 chr3 85165013 85165366 -132871792 - THE1B LTR MaLR 0 364 6 855 32 24 0 chr3 85165366 85165489 -132871669 + (TCTA)n Simple_repeat Simple_repeat 1 126 0 180 182 0 0 chr3 85166146 85166190 -132870968 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 2313 89 0 0 chr3 85166308 85166610 -132870548 - AluY SINE Alu -4 307 6 496 115 257 26 chr3 85166722 85166835 -132870323 + MER4C LTR ERV1 306 444 -21 5015 122 21 13 chr3 85166862 85167635 -132869523 + MER4E LTR ERV1 1 779 0 1536 146 8 23 chr3 85167636 85167896 -132869262 + MLT1B LTR MaLR 135 390 0 3189 102 0 0 chr3 85168201 85168631 -132868527 - MER41A LTR ERV1 0 554 125 2784 71 106 5 chr3 85168631 85169038 -132868120 + LTR7 LTR ERV1 1 448 -2 9424 92 42 53 chr3 85169040 85170942 -132866216 + HERVH LTR ERV1 1 2039 -5674 813 255 0 10 chr3 85171089 85171281 -132865877 - MER91B DNA MER1_type 0 190 1 253 337 0 12 chr3 85171411 85171497 -132865661 + L2 LINE L2 3174 3258 -14 186 353 24 12 chr3 85171681 85171766 -132865392 + L2 LINE L2 3147 3232 -40 232 360 0 11 chr3 85173463 85173552 -132863606 - MLT1J2 LTR MaLR -18 432 345 489 260 45 0 chr3 85173977 85174131 -132863027 - MER103 DNA DNA -2 164 4 216 250 10 120 chr3 85174265 85174365 -132862793 - MIR SINE MIR -85 123 35 267 132 0 0 chr3 85174516 85174554 -132862604 + MIR SINE MIR 113 150 -112 231 319 143 42 chr3 85174606 85174822 -132862336 - L2 LINE L2 -81 3232 2995 228 220 20 0 chr3 85174845 85174895 -132862263 + L2 LINE L2 3251 3301 -12 183 80 0 0 chr3 85174896 85174921 -132862237 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 645 202 214 22 chr3 85175091 85175269 -132861889 - MER20 DNA MER1_type -7 212 1 250 212 18 35 chr3 85175926 85176039 -132861119 + (TTATA)n Simple_repeat Simple_repeat 2 112 0 261 104 7 96 chr3 85176039 85176174 -132860984 + (TATAA)n Simple_repeat Simple_repeat 5 127 0 3635 108 0 8 chr3 85176281 85176817 -132860341 + HERVH LTR ERV1 2456 2987 -4726 * 6377 75 7 2 chr3 85176811 85177661 -132859497 + HERVH LTR ERV1 3140 3993 -3720 4466 143 0 1 chr3 85177663 85178326 -132858832 + HERVH LTR ERV1 4488 5149 -2564 1369 114 43 0 chr3 85178327 85178538 -132858620 + HERVH LTR ERV1 5600 5819 -1894 * 2376 111 45 13 chr3 85178536 85178916 -132858242 + HERVH LTR ERV1 7322 7713 0 2939 64 94 5 chr3 85178916 85179322 -132857836 + LTR7 LTR ERV1 1 442 -8 867 102 16 0 chr3 85179330 85179457 -132857701 - MER41B LTR ERV1 -506 129 1 499 234 46 36 chr3 85179572 85179802 -132857356 + MER106B DNA MER1_type 3 1059 0 2142 122 3 0 chr3 85179920 85180224 -132856934 + AluSx SINE Alu 1 305 -7 763 137 0 69 chr3 85180372 85180503 -132856655 - AluJb SINE Alu -13 299 178 402 284 11 0 chr3 85180641 85180729 -132856429 + MER5A DNA MER1_type 21 109 -80 3781 103 58 175 chr3 85180814 85180932 -132856226 + Tigger3(Golem) DNA MER2_type 48 178 -2851 2123 119 72 23 chr3 85180932 85181277 -132855881 + THE1B LTR MaLR 1 362 -2 3781 103 58 175 chr3 85181277 85181649 -132855509 + Tigger3(Golem) DNA MER2_type 178 592 -2437 2219 97 3 0 chr3 85181649 85181948 -132855210 - AluSc SINE Alu -9 300 1 1965 151 3 0 chr3 85181956 85182267 -132854891 - AluSx SINE Alu 0 312 1 3781 103 58 175 chr3 85182267 85182363 -132854795 + Tigger3(Golem) DNA MER2_type 599 705 -2324 868 143 0 0 chr3 85182363 85182496 -132854662 - AluSq/x SINE Alu -179 133 1 3781 103 58 175 chr3 85182496 85183084 -132854074 + Tigger3(Golem) DNA MER2_type 705 3029 0 205 250 19 0 chr3 85183827 85183879 -132853279 - MIR3 SINE MIR -5 203 151 377 136 0 12 chr3 85183898 85183979 -132853179 + (TCCA)n Simple_repeat Simple_repeat 1 80 0 358 325 25 17 chr3 85183983 85184103 -132853055 - L2 LINE L2 -1 3271 3151 665 229 46 23 chr3 85184303 85184478 -132852680 - MIR SINE MIR -38 224 46 2134 244 100 64 chr3 85184536 85184790 -132852368 + MER45C DNA AcHobo 2 245 -1336 195 42 0 0 chr3 85184790 85184814 -132852344 + (TC)n Simple_repeat Simple_repeat 2 25 0 2134 244 100 64 chr3 85184814 85185476 -132851682 + MER45C DNA AcHobo 245 951 -2 519 262 117 14 chr3 85185731 85185876 -132851282 - MIR SINE MIR -11 251 92 1199 149 71 78 chr3 85186855 85186919 -132850239 - MER33 DNA MER1_type -2278 307 244 2242 102 0 6 chr3 85186919 85187234 -132849924 + AluSq SINE Alu 1 313 0 1199 149 71 78 chr3 85187234 85187478 -132849680 - MER33 DNA MER1_type -2341 244 1 339 269 209 15 chr3 85187631 85187765 -132849393 + MER5A DNA MER1_type 30 189 0 357 305 147 0 chr3 85187991 85188181 -132848977 - MIR SINE MIR -8 254 37 2489 99 28 25 chr3 85188253 85188616 -132848542 - THE1B LTR MaLR 0 364 1 1283 76 0 0 chr3 85188962 85189120 -132848038 - MER9 LTR ERVK -353 158 1 729 133 0 0 chr3 85189120 85189225 -132847933 - AluJb SINE Alu -204 108 4 333 256 180 38 chr3 85189326 85189537 -132847621 + MLT1L LTR MaLR 226 466 -149 277 368 0 38 chr3 85189648 85189754 -132847404 + MIR SINE MIR 18 119 -89 987 258 71 43 chr3 85189791 85190359 -132846799 + MLT2E LTR ERVL 10 628 0 195 283 0 0 chr3 85190359 85190412 -132846746 + MIR SINE MIR 180 232 -30 567 281 7 20 chr3 85190470 85190623 -132846535 - MIR3 SINE MIR -38 170 20 300 270 72 18 chr3 85190677 85190788 -132846370 - MLT1L LTR MaLR -7 608 492 322 283 112 62 chr3 85190830 85191106 -132846052 - MLT1K LTR MaLR -172 416 127 222 37 0 0 chr3 85191163 85191190 -132845968 + (TGGGGG)n Simple_repeat Simple_repeat 1 27 0 3034 133 25 38 chr3 85191700 85192031 -132845127 - MER34C LTR ERV1 0 585 262 1839 145 0 20 chr3 85192031 85192327 -132844831 + AluJb SINE Alu 1 290 -22 3034 133 25 38 chr3 85192327 85192551 -132844607 - MER34C LTR ERV1 -323 262 37 2493 223 35 12 chr3 85192555 85193161 -132843997 - L1ME2 LINE L1 -17 6147 5528 370 281 30 7 chr3 85193322 85193457 -132843701 + LTR33 LTR ERVL 15 152 -369 1086 291 50 38 chr3 85193736 85194159 -132842999 + LTR33A LTR ERVL 96 523 0 1233 276 121 31 chr3 85194705 85195226 -132841932 - MLT1K LTR MaLR -19 569 2 218 318 68 0 chr3 85195239 85195327 -132841831 - L2 LINE L2 -37 3276 3183 437 136 97 10 chr3 85195730 85195833 -132841325 - L1MD2 LINE L1 -1 6358 6247 440 163 12 0 chr3 85195960 85196046 -132841112 + CT-rich Low_complexity Low_complexity 3 89 0 654 271 109 14 chr3 85196209 85196430 -132840728 - MER31B LTR ERV1 -108 358 117 368 73 0 0 chr3 85196430 85196485 -132840673 - MLT2A1 LTR ERVL 0 444 390 387 0 0 0 chr3 85196485 85196528 -132840630 + (TA)n Simple_repeat Simple_repeat 2 44 0 3152 74 0 36 chr3 85196574 85196774 -132840384 - MLT2A1 LTR ERVL -40 404 225 2239 74 40 0 chr3 85196774 85197073 -132840085 - AluY SINE Alu 0 311 1 3152 74 0 36 chr3 85197073 85197291 -132839867 - MLT2A1 LTR ERVL -219 225 1 21198 59 23 2 chr3 85197291 85199878 -132837280 - HERVL-A1 LTR ERVL 0 5654 3014 1665 138 7 14 chr3 85199930 85200205 -132836953 + AluSx SINE Alu 22 294 -18 472 131 36 12 chr3 85200214 85200298 -132836860 - MER31B LTR ERV1 -380 86 1 245 219 84 67 chr3 85200672 85200791 -132836367 + LTR16A1 LTR ERVL 337 457 0 465 197 0 10 chr3 85201298 85201316 -132835842 + L1MC/D LINE L1 5350 5367 -787 2151 101 17 0 chr3 85201316 85201613 -132835545 + AluSx SINE Alu 5 306 -6 465 197 0 10 chr3 85201613 85201698 -132835460 + L1MC/D LINE L1 5367 5447 -707 219 114 0 0 chr3 85201698 85201733 -132835425 + (A)n Simple_repeat Simple_repeat 1 35 0 582 272 92 18 chr3 85201890 85202107 -132835051 - MIR SINE MIR -22 240 8 239 244 269 0 chr3 85202162 85202240 -132834918 + LTR16C LTR ERVL 97 195 -296 616 236 81 0 chr3 85202337 85202485 -132834673 + LTR16C LTR ERVL 316 475 -16 378 61 0 0 chr3 85202563 85202612 -132834546 + (CA)n Simple_repeat Simple_repeat 2 50 0 2065 130 0 0 chr3 85202732 85203031 -132834127 - AluSx SINE Alu -8 304 6 1189 218 162 27 chr3 85203627 85204072 -132833086 + MLT1D LTR MaLR 1 505 0 532 304 18 68 chr3 85204136 85204185 -132832973 - MIR SINE MIR -44 218 168 768 235 0 19 chr3 85204185 85204347 -132832811 - FRAM SINE Alu -7 159 1 532 304 18 68 chr3 85204347 85204517 -132832641 - MIR SINE MIR -94 168 10 326 247 24 0 chr3 85204839 85204924 -132832234 + LTR67 LTR ERVL 471 557 0 1576 191 13 10 chr3 85205311 85205609 -132831549 + AluJb SINE Alu 1 299 -13 235 338 46 46 chr3 85206279 85206430 -132830728 + LTR16C LTR ERVL 341 491 0 21 36 0 0 chr3 85206484 85206512 -132830646 + AT_rich Low_complexity Low_complexity 1 28 0 1030 256 12 20 chr3 85206698 85206948 -132830210 - MIR SINE MIR -4 258 11 271 372 54 7 chr3 85207873 85208021 -132829137 + MIR3 SINE MIR 6 160 -48 1532 170 3 47 chr3 85208147 85208464 -132828694 + AluJo SINE Alu 2 304 -8 856 234 57 51 chr3 85208751 85208874 -132828284 + MER46C DNA MER2_type 3 124 -214 636 178 305 17 chr3 85208874 85209048 -132828110 - MER58A DNA MER1_type 0 224 1 856 234 57 51 chr3 85209048 85209141 -132828017 + MER46C DNA MER2_type 124 215 -123 2028 174 64 80 chr3 85209141 85209654 -132827504 + MLT1D LTR MaLR 1 505 0 856 234 57 51 chr3 85209654 85209770 -132827388 + MER46C DNA MER2_type 215 338 0 300 317 29 10 chr3 85209770 85209874 -132827284 + MIR SINE MIR 78 183 -79 415 209 26 9 chr3 85210207 85210322 -132826836 + LTR33 LTR ERVL 402 518 -3 299 298 161 78 chr3 85210325 85210567 -132826591 - MIR SINE MIR 0 262 1 400 261 27 9 chr3 85211291 85211402 -132825756 - LTR67 LTR ERVL 0 557 445 809 232 129 37 chr3 85211827 85212099 -132825059 + LTR16C LTR ERVL 193 489 -2 2228 224 78 8 chr3 85212357 85212857 -132824301 - MLT1F LTR MaLR 0 542 8 307 317 108 32 chr3 85213853 85214102 -132823056 + L2 LINE L2 2397 2664 -650 1578 209 66 49 chr3 85214155 85214566 -132822592 - MLT1J LTR MaLR -89 422 5 1683 301 63 39 chr3 85214617 85215329 -132821829 - L2 LINE L2 -492 2822 2094 188 138 0 0 chr3 85215346 85215375 -132821783 + MIR SINE MIR 119 147 -115 496 328 77 28 chr3 85215839 85216086 -132821072 - MIR SINE MIR -3 259 1 1319 194 44 3 chr3 85216119 85216573 -132820585 - MLT1D LTR MaLR -2 503 1 221 331 80 49 chr3 85216972 85217259 -132819899 + L2 LINE L2 2811 3106 -166 562 297 81 68 chr3 85217274 85217756 -132819402 - MLT1K LTR MaLR -31 557 70 237 108 27 0 chr3 85218030 85218067 -132819091 - MLT1D LTR MaLR 0 505 468 4805 157 22 29 chr3 85218067 85219056 -132818102 - MER11C LTR ERVK 0 1071 1 2405 156 68 27 chr3 85219057 85219499 -132817659 - MLT1D LTR MaLR -33 472 13 22 0 0 0 chr3 85219499 85219521 -132817637 + AT_rich Low_complexity Low_complexity 1 22 0 783 147 9 0 chr3 85219521 85219637 -132817521 - FLAM_C SINE Alu -16 117 1 1173 244 74 136 chr3 85219667 85220314 -132816844 - MLT1D-int LTR MaLR -4 1367 761 878 218 26 21 chr3 85220317 85220510 -132816648 + MER58A DNA MER1_type 25 218 -6 342 115 0 0 chr3 85221945 85221997 -132815161 + (CA)n Simple_repeat Simple_repeat 2 53 0 347 258 118 28 chr3 85222731 85222909 -132814249 - MLT1K LTR MaLR -2 586 393 244 173 19 39 chr3 85222909 85222961 -132814197 + CT-rich Low_complexity Low_complexity 1 51 0 3249 115 8 78 chr3 85223159 85223774 -132813384 - MER4B LTR ERV1 -36 574 3 1685 168 34 0 chr3 85223961 85224258 -132812900 + AluSx SINE Alu 2 308 -4 249 109 0 0 chr3 85224384 85224430 -132812728 + (A)n Simple_repeat Simple_repeat 1 46 0 862 204 23 23 chr3 85224901 85225073 -132812085 + MER5A DNA MER1_type 8 179 -10 482 298 37 50 chr3 85225278 85225334 -132811824 - MIR SINE MIR -13 249 194 1446 238 33 11 chr3 85225334 85225533 -132811625 - MLT1A2 LTR MaLR 0 374 162 216 0 0 0 chr3 85225533 85225557 -132811601 + (TC)n Simple_repeat Simple_repeat 2 25 0 1446 238 33 11 chr3 85225557 85225723 -132811435 - MLT1A2 LTR MaLR -212 162 1 482 298 37 50 chr3 85225723 85225884 -132811274 - MIR SINE MIR -68 194 35 219 175 25 0 chr3 85226082 85226122 -132811036 + CT-rich Low_complexity Low_complexity 4 44 0 233 310 0 0 chr3 85226449 85226520 -132810638 + T-rich Low_complexity Low_complexity 1 71 0 928 173 32 11 chr3 85226642 85226827 -132810331 - MER5A DNA MER1_type 0 189 1 854 284 125 37 chr3 85226882 85227179 -132809979 - MLT1L LTR MaLR 0 615 261 2066 122 7 0 chr3 85227179 85227473 -132809685 - AluSx SINE Alu -16 296 1 854 284 125 37 chr3 85227473 85227639 -132809519 - MLT1L LTR MaLR -354 261 111 251 258 34 11 chr3 85228426 85228515 -132808643 + MLT1K LTR MaLR 2 92 -496 239 358 176 23 chr3 85228761 85228818 -132808340 - L2 LINE L2 -8 3264 3217 1706 171 98 62 chr3 85228818 85229268 -132807890 - MLT1C LTR MaLR 0 467 2 239 358 176 23 chr3 85229268 85229512 -132807646 - L2 LINE L2 -55 3217 2917 304 266 53 65 chr3 85229672 85229841 -132807317 - LTR16A1 LTR ERVL -290 167 1 222 329 29 7 chr3 85229850 85229987 -132807171 - L2 LINE L2 -997 2317 2178 721 333 8 4 chr3 85230283 85230517 -132806641 + MIR SINE MIR 15 249 -13 860 278 94 17 chr3 85230603 85230837 -132806321 + MIR SINE MIR 10 261 -1 513 308 137 47 chr3 85231580 85232032 -132805126 + L2 LINE L2 2821 3313 0 187 273 36 0 chr3 85232052 85232107 -132805051 + MIR SINE MIR 66 122 -140 922 179 80 40 chr3 85233171 85233372 -132803786 + MER3 DNA MER1_type 1 209 0 1898 100 4 0 chr3 85233430 85233690 -132803468 - AluSp SINE Alu -6 307 47 2335 82 3 36 chr3 85233767 85234097 -132803061 + L1PA8A LINE L1 5812 6130 -1 458 216 29 10 chr3 85234122 85234224 -132802934 - MER5A DNA MER1_type -77 112 9 817 172 19 13 chr3 85234243 85234400 -132802758 - MER5B DNA MER1_type -3 175 18 562 297 19 0 chr3 85234798 85234953 -132802205 + MIR SINE MIR 28 185 -77 183 286 52 105 chr3 85235032 85235060 -132802098 + L2 LINE L2 2866 2894 -378 2243 100 0 6 chr3 85235060 85235371 -132801787 - AluY SINE Alu -2 309 1 183 286 52 105 chr3 85235371 85235552 -132801606 + L2 LINE L2 2894 3064 -208 602 248 203 69 chr3 85235581 85235916 -132801242 - L2 LINE L2 -1 3312 2933 241 213 223 53 chr3 85235980 85236074 -132801084 + L2 LINE L2 3200 3309 -4 536 247 18 18 chr3 85236741 85236907 -132800251 - LTR33 LTR ERVL -55 466 301 756 220 148 28 chr3 85237417 85237735 -132799423 - LTR16A LTR ERVL -5 445 90 264 200 18 0 chr3 85237879 85237934 -132799224 - LTR33 LTR ERVL -440 81 26 477 296 8 0 chr3 85238273 85238405 -132798753 - MIR SINE MIR -105 157 25 509 273 81 20 chr3 85239063 85239261 -132797897 - Charlie8 DNA MER1_type -2186 231 22 546 326 77 18 chr3 85239868 85240089 -132797069 + MIR SINE MIR 21 254 -8 214 294 245 7 chr3 85240391 85240534 -132796624 + L2 LINE L2 3128 3304 -9 487 341 24 19 chr3 85240702 85240910 -132796248 - MIR SINE MIR -7 255 47 1290 267 89 7 chr3 85240910 85241359 -132795799 - LTR16C LTR ERVL -5 486 1 324 120 0 0 chr3 85241431 85241481 -132795677 + (TCCC)n Simple_repeat Simple_repeat 3 52 0 1661 148 57 3 chr3 85241483 85241766 -132795392 - AluSx SINE Alu -14 298 1 2084 88 14 0 chr3 85242248 85242532 -132794626 - AluSx SINE Alu -24 288 1 530 292 62 15 chr3 85242642 85242837 -132794321 + MIR SINE MIR 2 205 -57 1941 111 3 34 chr3 85243410 85243707 -132793451 - AluSx SINE Alu -9 303 16 1801 253 9 14 chr3 85244084 85244519 -132792639 + LTR16A LTR ERVL 16 448 -2 1385 260 128 14 chr3 85244545 85245029 -132792129 - MER34 LTR ERV1 0 542 4 295 343 44 0 chr3 85245347 85245484 -132791674 - MIR3 SINE MIR -28 180 38 930 149 101 48 chr3 85247196 85247281 -132789877 + MER20 DNA MER1_type 1 80 -139 225 0 0 0 chr3 85247281 85247306 -132789852 + (TG)n Simple_repeat Simple_repeat 2 26 0 930 149 101 48 chr3 85247306 85247428 -132789730 + MER20 DNA MER1_type 80 219 0 875 270 0 5 chr3 85247647 85247862 -132789296 - LTR16C LTR ERVL -11 480 267 1556 123 0 0 chr3 85248451 85248678 -132788480 + AluSg/x SINE Alu 84 310 0 2464 143 21 35 chr3 85248729 85249076 -132788082 - MSTB LTR MaLR 0 426 85 1975 129 77 34 chr3 85249076 85249425 -132787733 - THE1B LTR MaLR 0 364 1 2464 143 21 35 chr3 85249425 85249509 -132787649 - MSTB LTR MaLR -341 85 1 255 286 0 0 chr3 85249509 85249565 -132787593 - MER5A DNA MER1_type -104 85 30 458 304 26 0 chr3 85250087 85250202 -132786956 - L2 LINE L2 0 3313 3196 1160 154 39 0 chr3 85250203 85250385 -132786773 + MER72 LTR ERV1 1 189 -533 939 88 184 0 chr3 85250387 85250534 -132786624 + L1PA8 LINE L1 5995 6168 -4 651 277 0 11 chr3 85250533 85250721 -132786437 - L1M1 LINE L1 -4438 3127 2942 * 858 230 148 30 chr3 85250729 85251059 -132786099 - L1MA9 LINE L1 -30 6282 5914 1522 214 160 10 chr3 85251077 85251495 -132785663 + MER49 LTR ERV1 174 880 -42 348 255 78 0 chr3 85251501 85251603 -132785555 - L2 LINE L2 -203 3110 3001 300 149 44 123 chr3 85252173 85252287 -132784871 + LTR37A LTR ERV1 59 163 -263 1029 128 67 0 chr3 85252323 85252487 -132784671 - MER34C LTR ERV1 0 585 411 738 184 153 78 chr3 85252835 85253037 -132784121 - LTR37A LTR ERV1 -1 425 189 2654 161 50 41 chr3 85253037 85253597 -132783561 + MER34B LTR ERV1 1 565 0 738 184 153 78 chr3 85253597 85253715 -132783443 - LTR37A LTR ERV1 -237 189 81 722 217 189 14 chr3 85253922 85254313 -132782845 + LTR33 LTR ERVL 2 521 0 980 83 0 0 chr3 85254324 85254456 -132782702 - AluSg/x SINE Alu -5 305 174 545 208 115 80 chr3 85254679 85255015 -132782143 + MER34 LTR ERV1 220 538 -4 2015 228 152 0 chr3 85255714 85256187 -132780971 + MLT1H1 LTR MaLR 11 555 0 2044 139 0 0 chr3 85256702 85257011 -132780147 + AluSx SINE Alu 1 309 -3 1027 283 97 33 chr3 85257567 85258051 -132779107 + LTR33 LTR ERVL 1 515 -6 1603 205 52 57 chr3 85258309 85258748 -132778410 - MLT2B2 LTR ERVL -4 511 75 432 91 76 0 chr3 85258845 85258911 -132778247 - MLT2B2 LTR ERVL -483 71 1 375 310 165 10 chr3 85258911 85259111 -132778047 + MIR SINE MIR 6 236 -26 1772 171 0 16 chr3 85259113 85259422 -132777736 + AluJb SINE Alu 1 304 -8 342 0 0 0 chr3 85260159 85260197 -132776961 + (CA)n Simple_repeat Simple_repeat 2 39 0 816 249 68 32 chr3 85260756 85261005 -132776153 + MIR SINE MIR 2 259 -3 31 0 0 0 chr3 85261034 85261065 -132776093 + AT_rich Low_complexity Low_complexity 1 31 0 368 275 75 25 chr3 85261342 85261460 -132775698 + MLT1F LTR MaLR 25 148 -419 664 205 49 43 chr3 85261460 85261645 -132775513 + MLT1C LTR MaLR 1 186 -281 357 109 0 0 chr3 85261667 85261713 -132775445 - AluJb SINE Alu -186 116 71 497 204 82 0 chr3 85261813 85261911 -132775247 - AluJb SINE Alu -205 107 2 1377 196 25 18 chr3 85261997 85262277 -132774881 + MLT1C LTR MaLR 183 464 -3 547 229 69 73 chr3 85262339 85262642 -132774516 + MLT1F LTR MaLR 184 505 -50 2548 131 37 47 chr3 85262655 85262684 -132774474 - L1MB2 LINE L1 -3 6168 6140 1749 143 0 98 chr3 85262684 85263019 -132774139 + AluJo SINE Alu 1 302 0 2548 131 37 47 chr3 85263019 85263478 -132773680 - L1MB2 LINE L1 -31 6140 5685 795 241 37 12 chr3 85263571 85263812 -132773346 + LTR16A1 LTR ERVL 211 457 0 826 258 89 28 chr3 85264148 85264536 -132772622 - MLT1G1 LTR MaLR 0 595 97 712 315 46 23 chr3 85264545 85264896 -132772262 - L2 LINE L2 -223 3049 2697 1147 147 17 0 chr3 85264910 85265087 -132772071 - MLT1B LTR MaLR 0 390 211 2197 119 51 23 chr3 85265277 85265631 -132771527 - THE1B LTR MaLR 0 364 1 1950 188 185 19 chr3 85265977 85266457 -132770701 + MLT1F1 LTR MaLR 3 562 -5 213 308 68 68 chr3 85266631 85266748 -132770410 - MIR3 SINE MIR -3 205 89 390 104 60 0 chr3 85267204 85267271 -132769887 + MADE1 DNA Mariner 10 80 0 498 284 8 63 chr3 85267550 85267789 -132769369 + L2 LINE L2 2827 3052 -220 1349 239 32 42 chr3 85267814 85268215 -132768943 + MLT2C1 LTR ERVL 1 397 0 444 161 12 0 chr3 85268294 85268375 -132768783 - MER53 DNA DNA -84 105 24 3399 99 32 15 chr3 85268391 85268865 -132768293 + MER1A DNA MER1_type 46 527 -2 384 307 53 37 chr3 85268887 85268919 -132768239 + L2 LINE L2 3122 3152 -161 1659 122 80 8 chr3 85268919 85269202 -132767956 - AluSx SINE Alu 0 302 1 384 307 53 37 chr3 85269202 85269357 -132767801 + L2 LINE L2 3152 3313 0 1069 312 60 36 chr3 85269375 85269926 -132767232 + Tigger8 DNA MER2_type 40 603 -63 220 227 0 0 chr3 85269955 85269999 -132767159 + L2 LINE L2 3007 3050 -222 408 290 120 25 chr3 85270225 85270425 -132766733 + MIR SINE MIR 2 220 -42 304 261 145 29 chr3 85270679 85270817 -132766341 - L1MCa LINE L1 -4361 2065 1912 247 161 32 0 chr3 85270818 85270880 -132766278 + (TA)n Simple_repeat Simple_repeat 2 65 0 267 174 145 0 chr3 85271243 85271312 -132765846 + MIR SINE MIR 62 140 -122 215 79 26 0 chr3 85271520 85271558 -132765600 + (CAA)n Simple_repeat Simple_repeat 3 41 0 444 280 26 107 chr3 85271597 85271760 -132765398 + MIR SINE MIR 7 141 -121 1504 163 0 44 chr3 85271760 85272055 -132765103 + AluJo SINE Alu 1 282 -30 444 280 26 107 chr3 85272055 85272162 -132764996 + MIR SINE MIR 141 255 -7 2217 113 0 0 chr3 85272861 85273171 -132763987 - AluSx SINE Alu -2 310 1 710 252 128 4 chr3 85273235 85273501 -132763657 - LTR16C LTR ERVL -2 489 191 611 279 36 27 chr3 85274123 85274342 -132762816 + MIR SINE MIR 42 262 0 388 314 9 0 chr3 85275535 85275640 -132761518 + L2 LINE L2 3207 3312 -1 781 277 53 40 chr3 85275724 85276024 -132761134 + MLT1E3 LTR MaLR 1 304 -320 1141 228 12 15 chr3 85276050 85276309 -132760849 + MIR SINE MIR 5 262 0 331 239 187 32 chr3 85276346 85276501 -132760657 + MER102a DNA MER1_type 152 330 0 912 98 8 8 chr3 85277503 85277635 -132759523 + AluSq/x SINE Alu 1 132 -181 1210 129 5 21 chr3 85277735 85277929 -132759229 - AluJo SINE Alu -117 195 5 463 300 7 33 chr3 85278430 85278580 -132758578 + MIR SINE MIR 116 261 -1 2338 66 0 0 chr3 85278693 85278981 -132758177 - AluY SINE Alu -21 290 3 802 194 16 78 chr3 85278985 85279022 -132758136 - MER5A DNA MER1_type -6 183 145 711 271 24 0 chr3 85279022 85279192 -132757966 + MER45A DNA AcHobo 1 174 -4 802 194 16 78 chr3 85279192 85279345 -132757813 - MER5A DNA MER1_type -44 145 5 398 297 23 29 chr3 85279357 85279532 -132757626 - MER5B DNA MER1_type -2 176 3 203 295 39 13 chr3 85279638 85279716 -132757442 + MER5B DNA MER1_type 93 172 -6 586 123 0 0 chr3 85279917 85279998 -132757160 + AluJ/FLAM SINE Alu 2 82 -230 465 261 203 0 chr3 85280026 85280179 -132756979 - MER5A DNA MER1_type -2 187 4 28 48 0 0 chr3 85280410 85280452 -132756706 + AT_rich Low_complexity Low_complexity 1 42 0 819 152 0 35 chr3 85280471 85280616 -132756542 - AluJo SINE Alu -171 141 2 285 269 138 28 chr3 85280645 85280790 -132756368 + MIR3 SINE MIR 23 183 -25 2037 117 10 0 chr3 85280985 85281285 -132755873 - AluSx SINE Alu -9 303 1 679 289 64 5 chr3 85283152 85283356 -132753802 + MIR SINE MIR 41 256 -6 638 246 40 48 chr3 85284513 85284732 -132752426 + MIR SINE MIR 47 262 0 189 344 172 0 chr3 85284765 85284858 -132752300 - L2 LINE L2 -5 3267 3159 450 314 31 31 chr3 85285018 85285209 -132751949 - MIR SINE MIR -71 191 1 428 281 18 0 chr3 85285712 85285826 -132751332 + MER20B DNA MER1_type 44 159 -624 787 238 38 110 chr3 85286017 85286362 -132750796 - MLT1B LTR MaLR -1 389 70 599 318 92 43 chr3 85287005 85287373 -132749785 - MLT1K LTR MaLR -7 581 196 1437 273 66 25 chr3 85287474 85287913 -132749245 + LTR16C LTR ERVL 35 491 0 1279 270 95 7 chr3 85288031 85288442 -132748716 - LTR16B LTR ERVL -17 447 1 322 181 24 0 chr3 85288568 85288574 -132748584 + (TATATG)n Simple_repeat Simple_repeat 5 9 -80 1607 172 7 3 chr3 85288574 85288859 -132748299 + AluJo SINE Alu 1 286 -26 322 181 24 0 chr3 85288859 85288935 -132748223 + (TATATG)n Simple_repeat Simple_repeat 9 89 0 955 182 4 136 chr3 85289413 85289671 -132747487 + MER58A DNA MER1_type 1 224 0 388 333 9 9 chr3 85289807 85289918 -132747240 - MIR SINE MIR -132 130 20 2432 154 95 42 chr3 85289987 85290481 -132746677 + MLT2B1 LTR ERVL 1 520 0 671 227 26 7 chr3 85290779 85290933 -132746225 + MIR SINE MIR 96 252 -10 185 283 17 0 chr3 85291198 85291258 -132745900 + L2 LINE L2 2332 2392 -922 294 196 89 0 chr3 85291661 85291717 -132745441 - MER7C DNA MER2_type 0 602 542 2161 166 75 0 chr3 85291717 85292102 -132745056 - MER7C DNA MER2_type -188 414 1 443 305 121 43 chr3 85292537 85292842 -132744316 + MER102b DNA MER1_type 10 338 -3 936 281 8 24 chr3 85292887 85293133 -132744025 + MIR SINE MIR 4 245 -17 185 226 19 38 chr3 85293179 85293232 -132743926 + L2 LINE L2 3261 3312 -1 1662 155 7 27 chr3 85293386 85293683 -132743475 + AluJb SINE Alu 1 291 -21 311 253 126 11 chr3 85294612 85294707 -132742451 + HAL1 LINE L1 1153 1258 -1249 2408 146 62 7 chr3 85295235 85295639 -132741519 - MSTB LTR MaLR 0 426 1 311 256 136 32 chr3 85295688 85295813 -132741345 + MIR SINE MIR 17 154 -108 330 208 360 8 chr3 85295822 85295947 -132741211 - MER5A DNA MER1_type -1 188 20 659 230 5 66 chr3 85295957 85296153 -132741005 + MER58C DNA MER1_type 32 215 0 699 278 92 9 chr3 85296411 85296550 -132740608 + LTR16C LTR ERVL 244 411 -80 639 254 23 74 chr3 85296550 85296713 -132740445 - MER63A DNA MER1_type -1481 207 56 2049 118 24 0 chr3 85296713 85297010 -132740148 - AluSx SINE Alu -8 304 1 639 254 23 74 chr3 85297010 85297063 -132740095 - MER63A DNA MER1_type -1632 56 2 699 278 92 9 chr3 85297063 85297150 -132740008 + LTR16C LTR ERVL 411 489 -2 1918 139 0 3 chr3 85297771 85298073 -132739085 + AluJb SINE Alu 12 312 0 775 242 72 98 chr3 85298073 85298408 -132738750 + MLT1J LTR MaLR 8 333 -178 2269 239 121 35 chr3 85299430 85300229 -132736929 + L1MC4 LINE L1 7175 8042 0 293 277 24 12 chr3 85300319 85300402 -132736756 - MIR3 SINE MIR -21 187 104 269 211 0 56 chr3 85300447 85300518 -132736640 + MIR SINE MIR 38 104 -158 783 235 60 57 chr3 85300525 85300999 -132736159 + MER39 LTR ERV1 9 687 -20 250 245 153 20 chr3 85301023 85301121 -132736037 + MIR SINE MIR 109 219 -43 281 47 23 0 chr3 85301261 85301304 -132735854 + (GA)n Simple_repeat Simple_repeat 1 44 0 418 168 11 11 chr3 85301305 85301400 -132735758 + GA-rich Low_complexity Low_complexity 2 96 0 516 278 102 75 chr3 85301436 85301832 -132735326 - MLT1L LTR MaLR -65 550 135 1152 231 76 56 chr3 85301832 85302110 -132735048 - MLT1J LTR MaLR 0 511 217 2178 71 3 10 chr3 85302110 85302405 -132734753 + AluSc SINE Alu 1 293 -16 1152 231 76 56 chr3 85302405 85302627 -132734531 - MLT1J LTR MaLR -294 217 1 516 278 102 75 chr3 85302627 85302751 -132734407 - MLT1L LTR MaLR -480 135 16 491 385 67 8 chr3 85303363 85303724 -132733434 + MLT1K LTR MaLR 5 386 -202 555 214 88 42 chr3 85303766 85303994 -132733164 + MLT1K LTR MaLR 32 588 0 1875 154 20 0 chr3 85304046 85304351 -132732807 - AluJb SINE Alu -1 311 1 1172 274 36 11 chr3 85304477 85304839 -132732319 - LTR16A LTR ERVL -20 430 60 2152 219 37 41 chr3 85305073 85305530 -132731628 - MER87 LTR ERV1 -8 533 77 2049 199 37 101 chr3 85305530 85306184 -132730974 + LTR9 LTR ERV1 1 612 0 2152 219 37 41 chr3 85306184 85306261 -132730897 - MER87 LTR ERV1 -464 77 1 268 125 0 0 chr3 85306272 85306312 -132730846 + LTR33 LTR ERVL 479 518 -3 716 234 15 68 chr3 85306324 85306589 -132730569 + MER34 LTR ERV1 8 258 -284 981 209 146 91 chr3 85306600 85307150 -132730008 - LTR49 LTR ERV1 -11 584 5 453 184 197 66 chr3 85307180 85307424 -132729734 + MER34 LTR ERV1 261 536 -6 1264 136 44 0 chr3 85307601 85307807 -132729351 + AluSg/x SINE Alu 89 303 -9 1065 124 10 59 chr3 85307809 85308011 -132729147 - MER67C LTR ERV1 -18 692 501 1079 171 117 29 chr3 85308012 85308286 -132728872 - MER67C LTR ERV1 -374 336 39 555 211 119 64 chr3 85308541 85308690 -132728468 + MER34C LTR ERV1 6 145 -595 5090 73 47 1 chr3 85308690 85309351 -132727807 + LTR8 LTR ERV1 1 691 0 555 211 119 64 chr3 85309351 85309548 -132727610 + MER34C LTR ERV1 145 485 -255 842 110 0 39 chr3 85309602 85309729 -132727429 - FLAM_A SINE Alu -12 130 9 393 211 125 40 chr3 85309755 85309907 -132727251 + MER34 LTR ERV1 378 542 0 427 176 14 0 chr3 85309963 85310037 -132727121 + MLT1C LTR MaLR 1 75 -392 5012 96 1 1 chr3 85310037 85310697 -132726461 + PABL_A LTR ERV1 1 660 0 248 91 0 0 chr3 85310919 85310952 -132726206 + MER51B LTR ERV1 343 375 -2 406 92 61 259 chr3 85310954 85311077 -132726081 + MLT1C LTR MaLR 72 153 -237 449 130 0 139 chr3 85311077 85311192 -132725966 + MER31A LTR ERV1 1 99 -386 591 112 20 20 chr3 85311212 85311310 -132725848 + MER4A LTR ERV1 1 98 -566 1786 97 37 56 chr3 85311310 85311662 -132725496 + MER4A LTR ERV1 261 664 0 2444 146 18 8 chr3 85311668 85312058 -132725100 + MER31A LTR ERV1 92 485 0 1263 206 19 58 chr3 85312062 85312373 -132724785 + MLT1C LTR MaLR 169 467 0 509 274 78 41 chr3 85312388 85312559 -132724599 + MIR SINE MIR 36 218 -44 2376 206 57 25 chr3 85312559 85313084 -132724074 + MLT1F LTR MaLR 1 542 0 509 274 78 41 chr3 85313084 85313131 -132724027 + MIR SINE MIR 218 262 0 347 308 38 14 chr3 85314757 85314968 -132722190 - MLT1K LTR MaLR -8 580 365 1165 288 37 11 chr3 85315060 85315435 -132721723 + LTR16C LTR ERVL 97 481 -10 693 343 90 12 chr3 85315439 85315783 -132721375 - MLT1K LTR MaLR -214 374 4 664 197 7 29 chr3 85315945 85316082 -132721076 + AluJo SINE Alu 6 139 -173 226 229 156 31 chr3 85316581 85316677 -132720481 - L2 LINE L2 -3 3269 3162 1745 204 84 14 chr3 85316711 85317128 -132720030 + L1MCa LINE L1 26 471 -5955 206 309 191 0 chr3 85317202 85317364 -132719794 - L2 LINE L2 -358 2956 2764 2372 87 0 0 chr3 85317429 85317738 -132719420 - AluSx SINE Alu -3 309 1 450 313 6 31 chr3 85317994 85318154 -132719004 + MIR SINE MIR 41 196 -66 960 340 34 19 chr3 85318158 85318575 -132718583 + L2 LINE L2 2362 2784 -530 1943 169 79 17 chr3 85418855 85419258 -132617900 + MLT1C LTR MaLR 14 441 -26 2446 161 0 0 chr3 85419276 85419667 -132617491 + MER57A LTR ERV1 13 403 0 242 69 0 0 chr3 85419669 85419698 -132617460 + MLT1B LTR MaLR 362 390 0 183 80 0 0 chr3 85419805 85419830 -132617328 + (TC)n Simple_repeat Simple_repeat 2 26 0 846 134 0 8 chr3 85419837 85419971 -132617187 - AluSq/x SINE Alu -179 133 1 636 229 194 55 chr3 85419977 85420168 -132616990 - HAL1 LINE L1 -1480 1027 864 1765 185 0 0 chr3 85420168 85420471 -132616687 + AluJb SINE Alu 1 303 -9 636 229 194 55 chr3 85420471 85420624 -132616534 - HAL1 LINE L1 -1643 864 635 882 209 119 99 chr3 85420682 85421137 -132616021 - HAL1 LINE L1 -2032 475 12 2260 195 10 33 chr3 85421163 85421680 -132615478 + L1MB8 LINE L1 3928 4432 -1714 1106 222 38 7 chr3 85421784 85422072 -132615086 - L1M4 LINE L1 -1430 4716 4420 180 0 0 0 chr3 85422135 85422155 -132615003 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 2545 218 27 12 chr3 85422162 85422754 -132614404 + L1MB8 LINE L1 4439 5039 -1107 1285 132 22 26 chr3 85422754 85422981 -132614177 + AluJo SINE Alu 82 307 -5 1137 185 76 0 chr3 85422981 85423265 -132613893 + L1MB8 LINE L1 5035 5336 -819 808 172 86 0 chr3 85423270 85423421 -132613737 + FRAM SINE Alu 8 171 -5 687 137 0 8 chr3 85423421 85423538 -132613620 + L1MB8 LINE L1 5310 5425 -759 2967 173 47 21 chr3 85423553 85424214 -132612944 + L1MB8 LINE L1 5486 6163 -15 21 0 0 0 chr3 85424221 85424242 -132612916 + AT_rich Low_complexity Low_complexity 1 21 0 2371 60 0 29 chr3 85424329 85424644 -132612514 - AluY SINE Alu -4 307 2 410 266 31 55 chr3 85424699 85424879 -132612279 + MIR SINE MIR 1 144 -64 584 199 139 7 chr3 85424967 85425118 -132612040 - MLT1K LTR MaLR 0 588 418 804 244 80 29 chr3 85425134 85425372 -132611786 + MIR SINE MIR 12 261 -1 239 231 115 39 chr3 85425539 85425617 -132611541 - MLT1K LTR MaLR -358 230 147 2159 165 10 63 chr3 85426906 85427318 -132609840 - MLT1B LTR MaLR 0 390 1 1552 121 47 74 chr3 85427423 85427721 -132609437 - AluSx SINE Alu -22 290 1 186 103 0 0 chr3 85427766 85427795 -132609363 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 243 287 174 36 chr3 85427883 85428050 -132609108 - L2 LINE L2 0 3313 3124 823 317 48 36 chr3 85428503 85429050 -132608108 - L2 LINE L2 0 3313 2692 1581 98 9 0 chr3 85429081 85429296 -132607862 - AluSq SINE Alu -96 217 1 669 252 81 17 chr3 85429519 85429841 -132607317 - MLT1I LTR MaLR -3 406 36 1582 195 94 13 chr3 85430284 85430665 -132606493 + MLT1B LTR MaLR 1 390 0 1586 161 54 10 chr3 85430677 85430975 -132606183 + AluJo SINE Alu 1 311 -1 853 255 43 48 chr3 85430984 85431400 -132605758 - HAL1 LINE L1 -74 2433 2020 925 252 135 47 chr3 85431437 85431704 -132605454 - LTR33 LTR ERVL -6 515 273 2173 141 123 8 chr3 85431704 85432086 -132605072 - MSTA LTR MaLR -2 426 1 925 252 135 47 chr3 85432086 85432291 -132604867 - LTR33 LTR ERVL -248 273 1 2088 262 102 17 chr3 85432307 85433079 -132604079 - HAL1 LINE L1 -543 1964 1127 2064 164 77 17 chr3 85433080 85433496 -132603662 + MLT1C LTR MaLR 1 441 -26 2446 161 0 0 chr3 85433514 85433905 -132603253 + MER57A LTR ERV1 13 403 0 242 69 0 0 chr3 85433907 85433936 -132603222 + MLT1B LTR MaLR 362 390 0 183 80 0 0 chr3 85434043 85434068 -132603090 + (TC)n Simple_repeat Simple_repeat 2 26 0 846 134 0 8 chr3 85434075 85434209 -132602949 - AluSq/x SINE Alu -179 133 1 635 224 198 55 chr3 85434215 85434405 -132602753 - HAL1 LINE L1 -1480 1027 865 1765 185 0 0 chr3 85434405 85434708 -132602450 + AluJb SINE Alu 1 303 -9 635 224 198 55 chr3 85434708 85434861 -132602297 - HAL1 LINE L1 -1642 865 635 882 209 119 99 chr3 85434919 85435374 -132601784 - HAL1 LINE L1 -2032 475 12 2260 195 10 33 chr3 85435400 85435917 -132601241 + L1MB8 LINE L1 3928 4432 -1714 1106 222 38 7 chr3 85436021 85436309 -132600849 - L1M4 LINE L1 -1430 4716 4420 180 0 0 0 chr3 85436372 85436392 -132600766 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 2545 218 27 12 chr3 85436399 85436991 -132600167 + L1MB8 LINE L1 4439 5039 -1107 1285 132 22 26 chr3 85436991 85437218 -132599940 + AluJo SINE Alu 82 307 -5 1137 185 76 0 chr3 85437218 85437502 -132599656 + L1MB8 LINE L1 5035 5336 -819 808 172 86 0 chr3 85437507 85437658 -132599500 + FRAM SINE Alu 8 171 -5 687 137 0 8 chr3 85437658 85437775 -132599383 + L1MB8 LINE L1 5310 5425 -759 2967 173 47 21 chr3 85437790 85438451 -132598707 + L1MB8 LINE L1 5486 6163 -15 21 0 0 0 chr3 85438458 85438479 -132598679 + AT_rich Low_complexity Low_complexity 1 21 0 2371 60 0 29 chr3 85438566 85438881 -132598277 - AluY SINE Alu -4 307 2 410 266 31 55 chr3 85438936 85439116 -132598042 + MIR SINE MIR 1 144 -64 584 199 139 7 chr3 85439204 85439355 -132597803 - MLT1K LTR MaLR 0 588 418 804 244 80 29 chr3 85439371 85439609 -132597549 + MIR SINE MIR 12 261 -1 239 231 115 39 chr3 85439776 85439854 -132597304 - MLT1K LTR MaLR -358 230 147 2159 165 10 63 chr3 85441143 85441555 -132595603 - MLT1B LTR MaLR 0 390 1 1552 121 47 74 chr3 85441660 85441958 -132595200 - AluSx SINE Alu -22 290 1 186 103 0 0 chr3 85442003 85442032 -132595126 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 243 287 174 36 chr3 85442120 85442287 -132594871 - L2 LINE L2 0 3313 3124 823 313 57 35 chr3 85442740 85443307 -132593851 - L2 LINE L2 0 3313 2666 266 291 13 0 chr3 85443330 85443409 -132593749 + MLT1K LTR MaLR 509 588 0 180 216 0 0 chr3 85443680 85443717 -132593441 - MIR SINE MIR -123 139 103 549 289 99 26 chr3 85444095 85444327 -132592831 + MIR SINE MIR 11 259 -3 628 271 61 52 chr3 85444898 85445127 -132592031 - MIR SINE MIR 0 262 32 210 128 0 0 chr3 85445772 85445811 -132591347 + (A)n Simple_repeat Simple_repeat 1 39 0 1196 265 133 49 chr3 85445866 85446394 -132590764 + MLT1K LTR MaLR 17 588 0 436 203 275 0 chr3 85446423 85446561 -132590597 + MIR SINE MIR 34 209 -53 186 237 34 0 chr3 85446982 85447041 -132590117 - MIR SINE MIR -168 94 34 892 189 6 0 chr3 85447123 85447282 -132589876 - AluJb SINE Alu -16 296 137 454 298 8 23 chr3 85447340 85447471 -132589687 + L2 LINE L2 3183 3311 -2 1752 142 0 33 chr3 85447556 85447858 -132589300 - AluSx SINE Alu -20 292 1 1437 206 143 50 chr3 85448090 85448552 -132588606 - MLT1D LTR MaLR 0 505 1 206 256 0 0 chr3 85448979 85449022 -132588136 - L2 LINE L2 -3 3310 3268 528 270 200 8 chr3 85449134 85449455 -132587703 - L2 LINE L2 -252 3061 2652 888 183 48 70 chr3 85449455 85449511 -132587647 - MER58A DNA MER1_type -2196 224 168 1657 176 10 0 chr3 85449511 85449813 -132587345 + AluJb SINE Alu 1 305 -7 888 183 48 70 chr3 85449813 85449985 -132587173 - MER58A DNA MER1_type -2252 168 1 528 270 200 8 chr3 85449985 85450007 -132587151 - L2 LINE L2 -661 2652 2636 538 225 86 20 chr3 85450011 85450162 -132586996 + MIR SINE MIR 84 244 -18 363 235 15 7 chr3 85451217 85451353 -132585805 + (TAGA)n Simple_repeat Simple_repeat 2 138 0 356 345 17 0 chr3 85451394 85451510 -132585648 - L2 LINE L2 -2 3270 3153 487 233 9 19 chr3 85451668 85451807 -132585351 + MIR SINE MIR 1 137 -71 * 641 288 14 33 chr3 85451800 85452012 -132585146 - L2 LINE L2 -3 3310 3103 1346 189 173 35 chr3 85452118 85452494 -132584664 + MLT1D LTR MaLR 78 505 0 271 265 60 36 chr3 85453066 85453149 -132584009 - MIR SINE MIR -70 192 108 699 305 19 5 chr3 85453177 85453390 -132583768 - MIR SINE MIR -46 216 1 439 317 38 32 chr3 85454177 85454363 -132582795 - MIR SINE MIR -11 251 65 358 146 0 0 chr3 85454417 85454472 -132582686 - MIR SINE MIR -67 141 87 187 267 0 0 chr3 85454609 85454654 -132582504 + MIR SINE MIR 111 155 -107 182 180 40 0 chr3 85455431 85455481 -132581677 + (CAGT)n Simple_repeat Simple_repeat 3 54 0 300 219 32 41 chr3 85455577 85455700 -132581458 + (CAGT)n Simple_repeat Simple_repeat 4 125 0 302 273 45 26 chr3 85456145 85456299 -132580859 + (CAGT)n Simple_repeat Simple_repeat 2 158 0 345 47 0 0 chr3 85456519 85456562 -132580596 + (CAGT)n Simple_repeat Simple_repeat 4 46 0 286 222 0 28 chr3 85456979 85457051 -132580107 + CT-rich Low_complexity Low_complexity 2 71 0 612 118 41 12 chr3 85457171 85457341 -132579817 + (CA)n Simple_repeat Simple_repeat 1 175 0 189 155 48 24 chr3 85457374 85457458 -132579700 + (CA)n Simple_repeat Simple_repeat 1 86 0 281 187 33 11 chr3 85457510 85457601 -132579557 + (CA)n Simple_repeat Simple_repeat 1 93 0 502 308 6 23 chr3 85458109 85458281 -132578877 + MIR SINE MIR 60 228 -34 528 324 36 0 chr3 85458418 85458629 -132578529 - MIR SINE MIR -12 250 34 353 250 65 19 chr3 85459727 85459835 -132577323 + L2 LINE L2 2941 3053 -219 1089 160 139 36 chr3 85459835 85460116 -132577042 - MLT1B LTR MaLR -141 249 1 191 234 21 0 chr3 85460152 85460199 -132576959 + MIR SINE MIR 100 147 -115 201 257 57 0 chr3 85460228 85460298 -132576860 + MIR SINE MIR 43 116 -92 1766 232 101 31 chr3 85460301 85460788 -132576370 - MLT1G1 LTR MaLR -5 590 70 665 230 40 0 chr3 85460871 85461019 -132576139 - MIR SINE MIR -48 214 61 1831 113 60 0 chr3 85461482 85461764 -132575394 - AluSx SINE Alu -13 299 1 508 274 59 0 chr3 85461840 85461975 -132575183 - MIR3 SINE MIR -58 150 8 497 306 28 56 chr3 85462103 85462355 -132574803 + MIR SINE MIR 4 248 -14 191 295 98 0 chr3 85462466 85462527 -132574631 - MIR SINE MIR -63 145 79 234 62 0 0 chr3 85462552 85462584 -132574574 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 462 254 92 24 chr3 85462588 85462914 -132574244 - LTR16C LTR ERVL 0 491 126 318 309 121 0 chr3 85463514 85463663 -132573495 + MIR SINE MIR 29 195 -67 428 280 11 80 chr3 85463930 85463978 -132573180 - MIR SINE MIR -73 189 139 2473 3 0 14 chr3 85463978 85464263 -132572895 - AluYa5 SINE Alu -1 310 30 428 280 11 80 chr3 85464263 85464389 -132572769 - MIR SINE MIR -123 139 27 874 232 6 0 chr3 85464515 85464692 -132572466 - MER45A DNA AcHobo 0 178 1 587 315 65 9 chr3 85464737 85464953 -132572205 + MIR SINE MIR 8 235 -27 742 251 23 0 chr3 85465783 85465958 -132571200 - MER5A DNA MER1_type -8 181 3 180 0 0 0 chr3 85466154 85466174 -132570984 + (CTTTG)n Simple_repeat Simple_repeat 1 20 0 518 259 84 0 chr3 85466267 85466398 -132570760 - MIR SINE MIR -87 175 34 572 335 48 32 chr3 85466415 85466666 -132570492 + L2 LINE L2 3016 3270 -2 366 253 0 17 chr3 85466939 85467117 -132570041 + (TGGA)n Simple_repeat Simple_repeat 3 177 0 488 326 0 11 chr3 85467136 85467311 -132569847 + (TGGA)n Simple_repeat Simple_repeat 4 176 0 330 227 5 43 chr3 85467336 85467521 -132569637 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 340 240 11 27 chr3 85467556 85467739 -132569419 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 852 145 0 0 chr3 85468359 85468504 -132568654 + L1MA4 LINE L1 6155 6299 -1 198 0 0 0 chr3 85468539 85468561 -132568597 + (TG)n Simple_repeat Simple_repeat 2 23 0 567 222 7 44 chr3 85468565 85468700 -132568458 - MIR SINE MIR -21 241 112 1023 231 70 87 chr3 85468714 85469247 -132567911 + MLT1G LTR MaLR 10 542 -13 205 250 69 14 chr3 85469430 85469502 -132567656 + MIR SINE MIR 162 237 -25 1626 256 44 40 chr3 85469502 85470412 -132566746 + L2 LINE L2 2397 3312 -1 836 266 71 53 chr3 85470789 85471112 -132566046 - MER102b DNA MER1_type -12 329 1 276 133 22 0 chr3 85471351 85471396 -132565762 + MLT1A2 LTR MaLR 1 46 -328 270 0 0 0 chr3 85471545 85471575 -132565583 + (CA)n Simple_repeat Simple_repeat 1 30 0 225 286 176 22 chr3 85471733 85471824 -132565334 + L2 LINE L2 3163 3267 -5 1358 249 26 67 chr3 85472062 85472555 -132564603 - MLT1J LTR MaLR -3 508 36 2372 93 0 0 chr3 85472557 85472870 -132564288 + AluSq SINE Alu 1 313 0 2041 134 0 3 chr3 85473290 85473595 -132563563 + AluSq SINE Alu 1 304 -9 183 231 0 0 chr3 85474026 85474065 -132563093 - L2 LINE L2 -18 3254 3216 258 250 0 100 chr3 85474780 85474880 -132562278 - MIR3 SINE MIR -34 174 85 482 268 0 38 chr3 85474971 85475128 -132562030 + MER103 DNA DNA 9 159 -7 373 269 185 0 chr3 85475204 85475312 -132561846 + MIR SINE MIR 19 146 -116 1485 164 11 111 chr3 85475424 85475674 -132561484 - MER58B DNA MER1_type -2079 341 140 2093 118 3 3 chr3 85475674 85475978 -132561180 - AluSx SINE Alu -8 304 1 1485 164 11 111 chr3 85475978 85476106 -132561052 - MER58B DNA MER1_type -2280 140 1 2050 115 6 10 chr3 85476249 85476562 -132560596 + AluSq SINE Alu 1 312 -1 257 264 151 0 chr3 85477874 85477980 -132559178 - MIR3 SINE MIR -54 154 33 325 152 127 13 chr3 85478417 85478496 -132558662 + MER117 DNA MER1_type 79 166 -31 26 0 0 0 chr3 85482543 85482569 -132554589 + AT_rich Low_complexity Low_complexity 1 26 0 180 0 0 0 chr3 85482603 85482623 -132554535 + (T)n Simple_repeat Simple_repeat 1 20 0 24 0 0 0 chr3 85483351 85483375 -132553783 + AT_rich Low_complexity Low_complexity 1 24 0 32 0 0 0 chr3 85483570 85483602 -132553556 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr3 85483789 85483810 -132553348 + AT_rich Low_complexity Low_complexity 1 21 0 1734 117 38 24 chr3 85486193 85486483 -132550675 - AluSg SINE Alu -16 294 1 339 219 73 21 chr3 85489246 85489342 -132547816 - MIR SINE MIR -83 179 79 784 228 114 9 chr3 85493023 85493242 -132543916 + Charlie1 DNA MER1_type 1 242 -2519 624 229 7 0 chr3 85493222 85493362 -132543796 + Charlie1 DNA MER1_type 2619 2759 -2 * 368 293 57 9 chr3 85494474 85494580 -132542578 + MIR3 SINE MIR 85 195 -13 913 200 80 15 chr3 85495400 85495600 -132541558 - MER20 DNA MER1_type -6 213 1 260 281 37 24 chr3 85497755 85497837 -132539321 - MIR SINE MIR -6 256 174 242 322 69 23 chr3 85497941 85498115 -132539043 - L2 LINE L2 -1230 2084 1903 1356 206 4 11 chr3 85498789 85499070 -132538088 + AluJo SINE Alu 1 279 -33 2558 215 131 36 chr3 85499255 85500123 -132537035 - L1MC4a LINE L1 -8 7800 6850 1523 184 0 42 chr3 85500131 85500441 -132536717 - AluJo SINE Alu -11 301 5 1846 208 53 17 chr3 85501241 85501909 -132535249 - L1ME2 LINE L1 -2 6162 5393 1302 166 85 0 chr3 85502523 85502678 -132534480 - AluJo SINE Alu -16 296 111 180 0 0 0 chr3 85502678 85502698 -132534460 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1302 166 85 0 chr3 85502698 85502789 -132534369 - AluJo SINE Alu -201 111 29 2405 77 3 0 chr3 85503740 85504051 -132533107 + AluSx SINE Alu 1 312 0 1071 193 139 18 chr3 85504753 85505033 -132532125 + MER2 DNA MER2_type 26 339 -6 2365 195 71 20 chr3 85506573 85507111 -132530047 + MLT1F1 LTR MaLR 1 565 -2 525 141 0 24 chr3 85507134 85507219 -132529939 - AluS SINE Alu -229 83 1 394 208 94 0 chr3 85507240 85507336 -132529822 - MER58 DNA MER1_type 0 2420 2316 261 226 0 0 chr3 85507333 85507395 -132529763 - MER58 DNA MER1_type -241 100 39 * 1603 170 110 24 chr3 85507591 85507927 -132529231 + MLT1A1 LTR MaLR 1 365 0 1489 146 73 43 chr3 85510071 85510400 -132526758 - MER44D DNA MER2_type 0 609 1 239 328 126 17 chr3 85511434 85511608 -132525550 - L2 LINE L2 -1 3312 3120 316 227 13 13 chr3 85512045 85512120 -132525038 - MER5B DNA MER1_type 0 178 104 279 259 0 74 chr3 85512274 85512382 -132524776 - MER5B DNA MER1_type -77 101 2 1358 179 200 23 chr3 85514415 85514800 -132522358 + MSTB2 LTR MaLR 3 455 -2 2024 126 0 16 chr3 85515548 85515857 -132521301 - AluSx SINE Alu -8 304 1 739 174 56 22 chr3 85516445 85516623 -132520535 - MER105 DNA DNA -20 184 1 421 168 54 101 chr3 85518330 85518479 -132518679 + MLT1A1 LTR MaLR 9 150 -215 668 167 0 8 chr3 85518491 85518611 -132518547 + FLAM_C SINE Alu 23 141 -2 697 193 62 19 chr3 85518644 85518805 -132518353 + MLT1A1 LTR MaLR 164 331 -34 1316 215 113 3 chr3 85518914 85519225 -132517933 + Tigger7 DNA MER2_type 1 345 -2142 775 165 6 24 chr3 85519226 85519390 -132517768 + Tigger7 DNA MER2_type 2320 2480 -7 550 223 43 7 chr3 85519625 85519764 -132517394 - MLT1A1 LTR MaLR -2 363 220 2525 211 76 46 chr3 85519772 85520145 -132517013 + L1ME1 LINE L1 5281 5641 -525 342 0 0 0 chr3 85520145 85520183 -132516975 + (TG)n Simple_repeat Simple_repeat 1 38 0 2525 211 76 46 chr3 85520183 85520665 -132516493 + L1ME1 LINE L1 5641 6162 -4 389 323 62 26 chr3 85521268 85521463 -132515695 + L1MB8 LINE L1 3251 3452 -2694 446 204 29 29 chr3 85521463 85521566 -132515592 + FLAM_C SINE Alu 39 141 -2 1663 178 10 27 chr3 85521569 85521861 -132515297 + AluJo SINE Alu 1 287 -25 1505 196 32 18 chr3 85521916 85522197 -132514961 + AluJo SINE Alu 1 285 -27 1271 118 0 0 chr3 85522267 85522445 -132514713 - AluSp SINE Alu -5 308 131 2146 209 208 51 chr3 85522482 85523282 -132513876 + L1MB8 LINE L1 3614 4287 -1879 901 220 0 19 chr3 85523282 85523491 -132513667 - MER3 DNA MER1_type -4 205 1 2146 209 208 51 chr3 85523491 85524246 -132512912 + L1MB8 LINE L1 4287 5433 -733 498 290 28 73 chr3 85525486 85525709 -132511449 + L1ME1 LINE L1 1585 1817 -4765 1837 111 50 0 chr3 85525709 85525971 -132511187 + AluSx SINE Alu 1 275 -37 180 0 0 0 chr3 85525973 85525993 -132511165 + (CA)n Simple_repeat Simple_repeat 1 20 0 498 290 28 73 chr3 85525993 85526118 -132511040 + L1ME1 LINE L1 1818 1964 -4618 2633 184 58 14 chr3 85526118 85526750 -132510408 + L1MB8 LINE L1 5514 6173 -5 1744 238 110 11 chr3 85526796 85527162 -132509996 + L1ME1 LINE L1 2006 2334 -4206 1593 197 0 23 chr3 85527162 85527472 -132509686 + AluJb SINE Alu 1 303 -9 1744 238 110 11 chr3 85527472 85527906 -132509252 + L1ME1 LINE L1 2334 2865 -3675 2502 218 96 41 chr3 85527918 85528625 -132508533 + L1ME1 LINE L1 3204 3871 -2669 2400 88 0 3 chr3 85528625 85528931 -132508227 + AluSc SINE Alu 1 305 -4 2502 218 96 41 chr3 85528931 85529315 -132507843 + L1ME1 LINE L1 3871 4365 -2175 1198 203 27 37 chr3 85529315 85529611 -132507547 + AluJo SINE Alu 1 293 -9 2502 218 96 41 chr3 85529611 85529684 -132507474 + L1ME1 LINE L1 4365 4433 -2107 2379 225 99 25 chr3 85529686 85530651 -132506507 + L1ME1 LINE L1 4474 5510 -1030 2275 216 79 40 chr3 85530708 85530787 -132506371 + L1ME1 LINE L1 5677 5751 -809 2038 150 0 0 chr3 85530787 85531093 -132506065 + AluSx SINE Alu 3 308 -4 2275 216 79 40 chr3 85531093 85531771 -132505387 + L1ME1 LINE L1 5751 6464 -96 2191 112 7 0 chr3 85533136 85533431 -132503727 + AluSp SINE Alu 1 297 -16 24 53 0 0 chr3 85534268 85534306 -132502852 + AT_rich Low_complexity Low_complexity 1 38 0 1682 166 0 24 chr3 85535265 85535561 -132501597 + AluJo SINE Alu 9 297 -15 224 348 43 28 chr3 85535561 85535702 -132501456 - L2 LINE L2 -219 3053 2911 2176 95 11 0 chr3 85536506 85536790 -132500368 + AluSx SINE Alu 1 287 -25 1439 26 0 11 chr3 85536794 85537062 -132500096 + (GAAA)n Simple_repeat Simple_repeat 1 264 0 203 227 23 0 chr3 85537213 85537257 -132499901 - L3b LINE CR1 -8 1575 1531 1685 193 0 37 chr3 85537258 85537579 -132499579 + AluJo SINE Alu 1 309 -3 267 290 92 38 chr3 85538590 85538721 -132498437 + MIR SINE MIR 54 191 -71 662 298 67 13 chr3 85539059 85539284 -132497874 - MIR SINE MIR -13 249 13 1324 169 53 7 chr3 85539294 85539596 -132497562 + MER33 DNA MER1_type 9 324 0 2774 178 59 22 chr3 85540059 85540765 -132496393 - L1MD2 LINE L1 -18 6224 5529 2289 86 0 3 chr3 85540803 85541104 -132496054 + AluY SINE Alu 1 300 -11 442 268 158 23 chr3 85541129 85541439 -132495719 - L1ME LINE L1 -301 5820 5469 1698 175 14 17 chr3 85541650 85541947 -132495211 - AluJo SINE Alu -16 296 1 415 172 35 46 chr3 85542201 85542288 -132494870 + MER5A DNA MER1_type 101 186 -3 236 192 14 68 chr3 85542875 85542948 -132494210 + MLT1K LTR MaLR 499 567 -21 260 272 67 50 chr3 85544227 85544407 -132492751 - L2 LINE L2 -1 3312 3130 259 295 86 22 chr3 85544663 85544802 -132492356 - L2 LINE L2 -494 2820 2673 203 304 14 72 chr3 85544803 85544941 -132492217 - L2 LINE L2 -962 2352 2223 278 221 0 0 chr3 85545554 85545622 -132491536 + L1ME3A LINE L1 5831 5898 -272 248 122 0 0 chr3 85545672 85545713 -132491445 - L1ME LINE L1 -251 5913 5873 339 264 123 25 chr3 85545769 85545932 -132491226 + L1ME3A LINE L1 5901 6079 -91 1465 187 7 49 chr3 85546150 85546455 -132490703 + AluJo SINE Alu 7 298 -14 321 271 0 12 chr3 85546458 85546543 -132490615 + L1ME3A LINE L1 6058 6141 -29 498 275 106 5 chr3 85547173 85547362 -132489796 + L2 LINE L2 3100 3307 -6 682 113 0 52 chr3 85548456 85548571 -132488587 + FLAM_C SINE Alu 27 135 -8 378 242 64 8 chr3 85548908 85549052 -132488106 + L1MB7 LINE L1 6007 6163 -10 1528 176 0 0 chr3 85549058 85549302 -132487856 + AluJb SINE Alu 48 291 -21 21 57 0 0 chr3 85552778 85552813 -132484345 + GC_rich Low_complexity Low_complexity 1 35 0 349 265 148 49 chr3 85553077 85553341 -132483817 - L1 LINE L1 -2785 4063 3774 24 53 0 0 chr3 85553578 85553616 -132483542 + GC_rich Low_complexity Low_complexity 1 38 0 195 42 0 0 chr3 85553640 85553664 -132483494 + (CCG)n Simple_repeat Simple_repeat 2 25 0 326 286 225 40 chr3 85553708 85554086 -132483072 - L1 LINE L1 -5738 1111 664 275 280 112 28 chr3 85554425 85554568 -132482590 + MIR SINE MIR 106 260 -2 936 215 50 25 chr3 85555549 85555791 -132481367 - L1ME3 LINE L1 -152 6010 5763 2188 93 3 6 chr3 85555883 85556195 -132480963 + AluSx SINE Alu 1 311 -1 1623 165 0 0 chr3 85556605 85556865 -132480293 + AluSx SINE Alu 39 298 -14 611 251 32 168 chr3 85556978 85557227 -132479931 + L2 LINE L2 2853 3000 -313 1747 147 0 69 chr3 85557227 85557561 -132479597 - AluJb SINE Alu -1 311 1 611 251 32 168 chr3 85557561 85557816 -132479342 + L2 LINE L2 3000 3288 -25 390 293 135 31 chr3 85557853 85558316 -132478842 - L2 LINE L2 -2 3311 2737 4195 191 26 19 chr3 85559608 85560778 -132476380 + L1ME1 LINE L1 4963 6134 -32 807 164 0 0 chr3 85560778 85560900 -132476258 + FRAM SINE Alu 33 154 -22 693 240 176 5 chr3 85561053 85561274 -132475884 + L2 LINE L2 2376 2634 -680 397 228 81 54 chr3 85561317 85561466 -132475692 - MLT1I LTR MaLR -7 402 250 1336 209 58 58 chr3 85561469 85561847 -132475311 + MSTD LTR MaLR 6 383 -13 572 233 121 46 chr3 85561851 85562091 -132475067 - MLT1I LTR MaLR -149 260 3 596 269 170 9 chr3 85562091 85562520 -132474638 + L2 LINE L2 2654 3188 -125 354 45 0 0 chr3 85562520 85562564 -132474594 + (TG)n Simple_repeat Simple_repeat 2 45 0 596 269 170 9 chr3 85562564 85562630 -132474528 + L2 LINE L2 3188 3242 -71 2176 85 7 3 chr3 85562796 85563091 -132474067 - AluSp SINE Alu -17 296 1 1703 185 0 0 chr3 85563116 85563414 -132473744 - AluJb SINE Alu -14 298 1 634 170 30 44 chr3 85563474 85563609 -132473549 - FLAM_A SINE Alu 0 133 1 217 312 32 21 chr3 85563654 85563747 -132473411 - MIR3 SINE MIR -7 201 108 1914 155 19 77 chr3 85564020 85564434 -132472724 + MLT1B LTR MaLR 1 390 0 1740 157 14 0 chr3 85564474 85564767 -132472391 + AluJb SINE Alu 1 297 -15 878 245 24 55 chr3 85564788 85565041 -132472117 - MIR SINE MIR 0 262 18 285 284 146 0 chr3 85565058 85565162 -132471996 - MIR SINE MIR -66 142 36 383 237 52 21 chr3 85565459 85565556 -132471602 - MIR SINE MIR -93 115 16 226 281 88 0 chr3 85565569 85565626 -132471532 - L2 LINE L2 -10 3303 3242 228 265 133 30 chr3 85566399 85566565 -132470593 - L2 LINE L2 -266 3006 2824 359 327 34 29 chr3 85566849 85567054 -132470104 - L2 LINE L2 -773 2541 2336 647 258 103 0 chr3 85567249 85567443 -132469715 - MLT1L LTR MaLR -221 394 181 462 279 7 29 chr3 85567717 85567853 -132469305 + MIR SINE MIR 2 134 -128 26 0 0 0 chr3 85567853 85567879 -132469279 + AT_rich Low_complexity Low_complexity 1 26 0 2076 106 0 0 chr3 85567879 85568161 -132468997 - AluSx SINE Alu -22 290 9 765 298 30 46 chr3 85568176 85568542 -132468616 - L2 LINE L2 -1104 2210 1851 461 333 14 7 chr3 85570296 85570440 -132466718 - L2 LINE L2 0 3272 3128 200 341 56 56 chr3 85570446 85570519 -132466639 - L2 LINE L2 -95 3218 3146 1865 151 3 0 chr3 85570519 85570817 -132466341 + AluSx SINE Alu 1 299 -13 200 341 56 56 chr3 85570817 85570890 -132466268 - L2 LINE L2 -167 3146 3069 1089 175 24 9 chr3 85570890 85571101 -132466057 + MER20 DNA MER1_type 4 217 -2 200 341 56 56 chr3 85571101 85571167 -132465991 - L2 LINE L2 -243 3070 3005 611 302 190 28 chr3 85571451 85572202 -132464956 - L2 LINE L2 -588 2726 1854 1284 268 138 30 chr3 85572335 85572862 -132464296 - MLT1L LTR MaLR -31 584 1 695 210 102 0 chr3 85573126 85573283 -132463875 - MIR SINE MIR -15 247 75 660 294 55 31 chr3 85573806 85574061 -132463097 - MIR SINE MIR 0 262 2 1997 151 0 0 chr3 85574373 85574685 -132462473 + AluSx SINE Alu 1 312 0 476 264 14 90 chr3 85575057 85575201 -132461957 - MER91A DNA MER1_type 0 196 64 262 299 220 19 chr3 85575582 85575796 -132461362 + MIR SINE MIR 6 262 0 216 97 0 0 chr3 85575851 85575882 -132461276 + (T)n Simple_repeat Simple_repeat 1 31 0 1933 135 0 28 chr3 85575935 85576254 -132460904 + AluJb SINE Alu 1 310 -2 878 129 0 0 chr3 85576668 85576800 -132460358 + AluSg/x SINE Alu 166 297 -13 2363 231 51 25 chr3 85577933 85578536 -132458622 - MLT1E2 LTR MaLR -7 619 1 1244 192 101 77 chr3 85578629 85578762 -132458396 - MLT1F1 LTR MaLR 0 567 439 2042 128 75 19 chr3 85578762 85579081 -132458077 + MER1B DNA MER1_type 1 337 0 1244 192 101 77 chr3 85579081 85579322 -132457836 - MLT1F1 LTR MaLR -128 439 184 504 118 0 13 chr3 85579401 85579477 -132457681 - Alu SINE Alu -10 300 226 1529 103 13 13 chr3 85579577 85579810 -132457348 - AluSx SINE Alu -62 250 18 949 141 7 0 chr3 85579810 85579959 -132457199 + AluSg/x SINE Alu 147 296 -16 2239 147 16 16 chr3 85579959 85580298 -132456860 - L1MB2 LINE L1 -40 6131 5790 1229 205 25 113 chr3 85580298 85580698 -132456460 + MLT1A1 LTR MaLR 1 365 0 2239 147 16 16 chr3 85580698 85580745 -132456413 - L1MB2 LINE L1 -380 5791 5745 306 284 10 51 chr3 85580820 85580962 -132456196 - MER5A DNA MER1_type -13 165 29 216 0 0 0 chr3 85580962 85580986 -132456172 + (T)n Simple_repeat Simple_repeat 1 24 0 2360 148 30 5 chr3 85580999 85581405 -132455753 - L1MB7 LINE L1 -19 6165 5750 362 277 38 82 chr3 85581469 85581570 -132455588 + MER5A DNA MER1_type 27 120 -69 1699 173 3 3 chr3 85581570 85581876 -132455282 - AluJb SINE Alu -4 308 3 362 277 38 82 chr3 85581876 85581933 -132455225 + MER5A DNA MER1_type 120 178 -11 206 321 0 0 chr3 85582241 85582293 -132454865 - L3b LINE CR1 0 1583 1532 234 325 147 13 chr3 85582293 85582450 -132454708 + MER5B DNA MER1_type 1 178 0 392 220 39 66 chr3 85582936 85583118 -132454040 + MER5B DNA MER1_type 1 177 -1 612 255 143 12 chr3 85583639 85583800 -132453358 - MER5A DNA MER1_type 0 189 8 429 254 8 75 chr3 85583836 85583970 -132453188 + MIR3 SINE MIR 36 160 -48 456 290 95 15 chr3 85584745 85584945 -132452213 - MIR SINE MIR -11 251 36 22 0 0 0 chr3 85585109 85585131 -132452027 + AT_rich Low_complexity Low_complexity 1 22 0 284 260 47 55 chr3 85585320 85585447 -132451711 - L2 LINE L2 -3 3310 3185 262 301 7 55 chr3 85585943 85586089 -132451069 + L1ME4a LINE L1 5978 6116 -5 314 312 24 22 chr3 85586209 85586338 -132450820 + MIR SINE MIR 20 153 -58 1907 209 89 35 chr3 85586491 85586623 -132450535 + MLT1F LTR MaLR 19 142 -400 1881 107 209 8 chr3 85586623 85586978 -132450180 + MSTA LTR MaLR 3 428 0 1907 209 89 35 chr3 85586978 85587338 -132449820 + MLT1F LTR MaLR 142 538 -4 323 311 75 0 chr3 85587369 85587475 -132449683 + L3 LINE CR1 320 433 -1144 1423 194 43 65 chr3 85587631 85588002 -132449156 + MLT1A1 LTR MaLR 3 365 0 1754 151 28 7 chr3 85588044 85588335 -132448823 + AluSx SINE Alu 1 297 -15 1883 130 19 29 chr3 85588777 85589092 -132448066 + AluSx SINE Alu 1 312 0 183 295 33 0 chr3 85589359 85589420 -132447738 + MIR SINE MIR 4 66 -196 210 260 71 39 chr3 85589438 85589554 -132447604 - MIR SINE MIR -54 154 42 288 327 33 27 chr3 85589637 85589787 -132447371 + L3b LINE CR1 1421 1571 -12 248 317 50 19 chr3 85590043 85590204 -132446954 - L1ME4a LINE L1 -1 6120 5955 549 229 67 107 chr3 85590298 85590551 -132446607 - MIR SINE MIR -2 260 18 402 21 0 0 chr3 85590555 85590602 -132446556 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 807 148 0 0 chr3 85590602 85590724 -132446434 - FLAM_C SINE Alu -21 122 1 2126 120 0 3 chr3 85590833 85591133 -132446025 - AluSx SINE Alu -13 299 1 1799 130 101 46 chr3 85591547 85591761 -132445397 - THE1B LTR MaLR 0 364 122 2020 125 20 3 chr3 85591761 85592056 -132445102 + AluSx SINE Alu 1 300 -12 1799 130 101 46 chr3 85592056 85592186 -132444972 - THE1B LTR MaLR -242 122 1 476 255 7 28 chr3 85592275 85592420 -132444738 - LTR67 LTR ERVL -2 555 414 609 167 42 17 chr3 85592951 85593071 -132444087 - THE1C LTR MaLR 0 375 253 368 191 281 0 chr3 85593071 85593160 -132443998 + MER5A DNA MER1_type 75 188 -1 1855 153 3 7 chr3 85593187 85593495 -132443663 - AluJb SINE Alu -5 307 1 246 215 0 51 chr3 85594279 85594358 -132442800 + (CTGGGG)n Simple_repeat Simple_repeat 6 80 0 504 199 0 170 chr3 85595333 85595432 -132441726 - MIR SINE MIR -14 248 134 1513 171 52 11 chr3 85595432 85595718 -132441440 - AluJo SINE Alu -8 304 7 1044 180 32 23 chr3 85595723 85595940 -132441218 + MER20 DNA MER1_type 1 219 0 504 199 0 170 chr3 85595940 85596005 -132441153 - MIR SINE MIR -132 130 107 1895 125 27 3 chr3 85596092 85596388 -132440770 - AluSx SINE Alu -9 303 1 224 30 30 0 chr3 85597099 85597132 -132440026 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2006 122 3 3 chr3 85597133 85597437 -132439721 + AluSx SINE Alu 1 304 -8 2207 125 0 0 chr3 85598242 85598554 -132438604 + AluSx SINE Alu 1 312 0 485 292 123 18 chr3 85599070 85599241 -132437917 - MER91A DNA MER1_type 0 196 8 918 150 56 0 chr3 85599521 85599681 -132437477 + AluJb SINE Alu 130 298 -14 2206 116 3 0 chr3 85599702 85600013 -132437145 - AluSx SINE Alu 0 312 1 273 280 72 40 chr3 85600133 85600258 -132436900 - MER94 DNA DNA -2 132 4 2011 115 41 0 chr3 85600342 85600637 -132436521 + AluSx SINE Alu 1 307 -5 2160 203 108 6 chr3 85600780 85601272 -132435886 - MLT1F LTR MaLR 0 542 1 208 286 14 14 chr3 85602173 85602243 -132434915 - L2 LINE L2 -65 3207 3138 571 262 77 60 chr3 85602532 85602765 -132434393 - MIR SINE MIR -19 243 7 398 127 14 0 chr3 85603284 85603355 -132433803 + CT-rich Low_complexity Low_complexity 4 75 0 535 224 52 8 chr3 85603468 85603602 -132433556 + MER102b DNA MER1_type 43 182 -159 232 277 36 0 chr3 85603703 85603786 -132433372 + MER102b DNA MER1_type 206 291 -50 2078 100 4 0 chr3 85604045 85604326 -132432832 + AluSp SINE Alu 3 284 -29 516 284 158 11 chr3 85604337 85604527 -132432631 + MIR SINE MIR 34 251 -11 945 202 64 108 chr3 85604717 85604815 -132432343 - MSTD LTR MaLR -34 398 297 2369 71 0 3 chr3 85604815 85605124 -132432034 - AluY SINE Alu -3 308 1 945 202 64 108 chr3 85605124 85605404 -132431754 - MSTD LTR MaLR -135 297 1 196 171 0 24 chr3 85605406 85605447 -132431711 - MIR SINE MIR -102 160 121 515 243 224 7 chr3 85605631 85605783 -132431375 - MER5A DNA MER1_type -1 188 4 602 401 34 94 chr3 85605807 85606253 -132430905 + MLT1K LTR MaLR 166 584 -4 2227 198 54 72 chr3 85606274 85606844 -132430314 - MLT1F1 LTR MaLR 0 567 8 464 268 31 16 chr3 85606887 85607014 -132430144 + MIR3 SINE MIR 32 160 -48 183 80 0 0 chr3 85607441 85607466 -132429692 + (ATG)n Simple_repeat Simple_repeat 3 27 0 413 358 53 5 chr3 85607486 85607693 -132429465 - MIR SINE MIR -37 225 9 1843 174 3 0 chr3 85607852 85608150 -132429008 + AluSx SINE Alu 1 299 -13 1525 186 0 33 chr3 85658970 85659277 -132377881 + AluJb SINE Alu 1 297 -15 193 333 111 28 chr3 85659769 85659877 -132377281 + L2 LINE L2 3090 3206 -66 225 0 0 0 chr3 85659956 85659981 -132377177 + (T)n Simple_repeat Simple_repeat 1 25 0 763 167 33 86 chr3 85660017 85660262 -132376896 + MER33 DNA MER1_type 1 232 -92 21 0 0 0 chr3 85660264 85660285 -132376873 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 85660337 85660360 -132376798 + AT_rich Low_complexity Low_complexity 1 23 0 958 167 0 21 chr3 85660369 85660555 -132376603 - AluJo SINE Alu -11 301 120 705 231 13 13 chr3 85661145 85661301 -132375857 + MER5B DNA MER1_type 3 158 -20 194 226 196 69 chr3 85661318 85661420 -132375738 + L2 LINE L2 3156 3270 -2 366 162 0 0 chr3 85661469 85661543 -132375615 + (TGAA)n Simple_repeat Simple_repeat 3 76 0 596 276 61 37 chr3 85662367 85662581 -132374577 + MLT1K LTR MaLR 162 380 -208 185 0 40 0 chr3 85662613 85662638 -132374520 + (CAA)n Simple_repeat Simple_repeat 2 27 0 646 287 10 31 chr3 85662653 85662848 -132374310 + LTR16B LTR ERVL 1 191 -273 * 657 214 64 7 chr3 85662845 85662985 -132374173 - MLT1J LTR MaLR -362 149 2 207 0 0 0 chr3 85663422 85663445 -132373713 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 825 252 61 13 chr3 85663687 85663917 -132373241 + MIR SINE MIR 15 255 -7 600 220 143 20 chr3 85664393 85664638 -132372520 + ORSL DNA AcHobo 1 275 0 326 220 0 0 chr3 85664639 85664698 -132372460 - L2 LINE L2 0 3313 3255 180 0 0 0 chr3 85664821 85664841 -132372317 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 393 240 10 30 chr3 85664979 85665079 -132372079 + MIR SINE MIR 92 189 -73 851 157 180 0 chr3 85665080 85665252 -132371906 - MLT1D LTR MaLR 0 505 303 304 235 49 25 chr3 85665269 85665350 -132371808 + MLT1L LTR MaLR 120 202 -413 * 526 280 73 41 chr3 85665340 85665685 -132371473 + MLT1K LTR MaLR 240 613 -2 399 295 90 8 chr3 85666249 85666371 -132370787 + MIR3 SINE MIR 10 141 -67 769 200 26 0 chr3 85666371 85666526 -132370632 + MLT1F1 LTR MaLR 378 536 -31 607 168 21 0 chr3 85666526 85666621 -132370537 + MER2 DNA MER2_type 1 97 -248 207 274 0 0 chr3 85666774 85666825 -132370333 + MIR3 SINE MIR 152 202 -6 362 330 5 48 chr3 85668324 85668512 -132368646 - MIR SINE MIR -24 238 59 494 259 29 35 chr3 85668517 85668691 -132368467 - MER5B DNA MER1_type -1 177 5 787 195 69 0 chr3 85668827 85669001 -132368157 - MER5A DNA MER1_type 0 189 4 554 138 23 0 chr3 85669698 85669785 -132367373 + MSTA LTR MaLR 1 89 -339 2917 127 84 18 chr3 85669786 85670297 -132366861 - LTR10A LTR ERV1 -64 545 1 238 163 41 0 chr3 85670320 85670369 -132366789 - LTR10B LTR ERV1 -496 51 1 2146 127 12 19 chr3 85670369 85670693 -132366465 + MSTA LTR MaLR 71 392 -36 1310 170 0 0 chr3 85670694 85670917 -132366241 - AluSg/x SINE Alu -4 306 84 325 50 0 0 chr3 85670919 85670959 -132366199 + MSTA LTR MaLR 388 427 -1 * 557 249 62 40 chr3 85670959 85671406 -132365752 - LTR48B LTR ERV1 -75 712 10 2197 103 0 16 chr3 85672153 85672465 -132364693 + AluSx SINE Alu 1 307 -5 313 198 88 161 chr3 85672493 85672766 -132364392 - L1ME4a LINE L1 -1 6120 5868 1179 261 145 24 chr3 85673198 85673645 -132363513 + MLT1H LTR MaLR 1 547 -2 503 211 11 0 chr3 85673768 85673863 -132363295 - MLT1D LTR MaLR -118 387 292 866 182 0 0 chr3 85673981 85674140 -132363018 - L1MA10 LINE L1 0 6334 6176 2162 129 45 28 chr3 85674157 85674514 -132362644 + THE1B LTR MaLR 2 364 0 1466 218 19 25 chr3 85674601 85674918 -132362240 - L1ME4a LINE L1 -322 5844 5530 4279 141 38 52 chr3 85675829 85676625 -132360533 + LTR1 LTR ERV1 1 785 0 813 267 114 18 chr3 85676705 85677083 -132360075 - LTR16A LTR ERVL 0 450 1 359 279 20 54 chr3 85677223 85677370 -132359788 - MIR SINE MIR 0 262 121 328 263 88 0 chr3 85677688 85677768 -132359390 - L2 LINE L2 -18 3254 3168 27 0 0 0 chr3 85677831 85677858 -132359300 + AT_rich Low_complexity Low_complexity 1 27 0 2140 94 3 0 chr3 85677858 85678145 -132359013 - AluSx SINE Alu -24 288 1 1150 231 141 34 chr3 85678577 85678989 -132358169 - LTR16C LTR ERVL 0 491 36 393 252 90 9 chr3 85678991 85679102 -132358056 - MIR SINE MIR -111 151 32 2165 115 0 0 chr3 85679264 85679569 -132357589 - AluSx SINE Alu -7 305 1 1854 146 0 25 chr3 85680325 85680640 -132356518 - AluJb SINE Alu -5 307 1 200 308 46 31 chr3 85680643 85680708 -132356450 - MIR SINE MIR -193 69 4 195 308 0 0 chr3 85680746 85680798 -132356360 + MIR SINE MIR 156 207 -55 780 206 10 86 chr3 85681387 85681596 -132355562 - L1ME3A LINE L1 -10 6160 5968 1174 120 0 11 chr3 85681596 85681771 -132355387 - AluSx SINE Alu -19 293 121 869 108 0 29 chr3 85681814 85681953 -132355205 - AluSx SINE Alu -178 135 1 1533 175 13 138 chr3 85681956 85682420 -132354738 - L1ME3A LINE L1 -194 5976 5571 6656 36 4 0 chr3 85682446 85683229 -132353929 - L1PA5 LINE L1 -1 6153 5368 319 224 0 0 chr3 85683225 85683283 -132353875 - L1ME3A LINE L1 -584 5586 5529 * 320 196 0 0 chr3 85683396 85683447 -132353711 - LTR67 LTR ERVL 0 557 507 1565 236 78 9 chr3 85684102 85684539 -132352619 - MLT1C LTR MaLR 0 467 1 357 255 78 71 chr3 85684753 85684816 -132352342 + MIR SINE MIR 4 65 -197 2210 113 0 0 chr3 85684816 85685127 -132352031 + AluSq SINE Alu 1 311 -2 357 255 78 71 chr3 85685127 85685318 -132351840 + MIR SINE MIR 65 260 -2 870 272 35 21 chr3 85686363 85686653 -132350505 - MER115 DNA AcHobo -26 667 374 405 81 0 0 chr3 85686656 85686718 -132350440 + (TC)n Simple_repeat Simple_repeat 1 62 0 935 266 47 70 chr3 85686721 85687105 -132350053 - MER115 DNA AcHobo -318 375 1 211 360 0 0 chr3 85688294 85688380 -132348778 + L2 LINE L2 2542 2627 -687 303 213 139 37 chr3 85688405 85688510 -132348648 + MLT1J LTR MaLR 27 142 -369 324 246 0 0 chr3 85688510 85688575 -132348583 - MLT1E LTR MaLR 0 593 529 2002 138 3 0 chr3 85688577 85688882 -132348276 + AluSx SINE Alu 1 306 -6 722 148 113 0 chr3 85688890 85689005 -132348153 + FLAM_C SINE Alu 2 129 -14 324 0 0 0 chr3 85689014 85689050 -132348108 + (CA)n Simple_repeat Simple_repeat 2 37 0 * 387 0 0 0 chr3 85689049 85689092 -132348066 + (TC)n Simple_repeat Simple_repeat 1 43 0 1558 231 83 41 chr3 85689092 85689503 -132347655 - MLT1E LTR MaLR -67 526 99 542 204 12 72 chr3 85689520 85689687 -132347471 + MLT1K LTR MaLR 432 588 0 1311 161 28 0 chr3 85689789 85690007 -132347151 - MER58A DNA MER1_type 0 224 1 323 298 132 0 chr3 85690600 85690714 -132346444 + L2 LINE L2 3140 3268 -4 355 358 7 0 chr3 85691140 85691277 -132345881 + MIR SINE MIR 1 138 -124 262 345 0 0 chr3 85691708 85691795 -132345363 + MIR SINE MIR 162 248 -14 288 232 29 0 chr3 85692181 85692250 -132344908 + LTR16A1 LTR ERVL 385 455 -2 220 338 53 26 chr3 85692361 85692512 -132344646 - MIR3 SINE MIR -8 200 46 203 306 32 0 chr3 85692488 85692550 -132344608 + L2 LINE L2 3209 3272 0 * 493 184 41 0 chr3 85692908 85693006 -132344152 - MER5A DNA MER1_type -77 112 11 210 250 42 0 chr3 85693042 85693090 -132344068 + L2 LINE L2 2985 3034 -238 404 269 184 0 chr3 85693310 85693451 -132343707 - MIR SINE MIR -33 229 63 814 156 0 0 chr3 85693471 85693593 -132343565 + FLAM_A SINE Alu 2 123 -10 22 0 0 0 chr3 85693593 85693615 -132343543 + AT_rich Low_complexity Low_complexity 1 22 0 1009 298 70 24 chr3 85694387 85694843 -132342315 + L2 LINE L2 2836 3312 -1 298 212 46 6 chr3 85694842 85694928 -132342230 - MIR SINE MIR -87 121 74 * 209 229 193 57 chr3 85695101 85695241 -132341917 - MIR SINE MIR -47 215 57 376 236 249 6 chr3 85695416 85695581 -132341577 + MIR SINE MIR 46 250 -12 194 170 50 160 chr3 85695804 85695904 -132341254 + L2 LINE L2 3221 3309 -4 * 204 278 185 0 chr3 85695882 85696033 -132341125 - L2 LINE L2 -326 2987 2809 1229 274 112 37 chr3 85696684 85696794 -132340364 + MLT1K LTR MaLR 13 113 -475 1461 138 0 13 chr3 85696794 85697026 -132340132 - AluJb SINE Alu -83 229 1 1229 274 112 37 chr3 85697026 85697433 -132339725 + MLT1K LTR MaLR 113 569 -19 545 311 31 5 chr3 85698407 85698603 -132338555 + LTR16C LTR ERVL 89 289 -202 475 71 14 0 chr3 85698719 85698789 -132338369 - AluSp/q SINE Alu -5 308 238 690 193 37 0 chr3 85699356 85699491 -132337667 - FLAM_C SINE Alu -1 142 3 42 36 0 0 chr3 85699507 85699563 -132337595 + AT_rich Low_complexity Low_complexity 1 56 0 549 259 26 0 chr3 85699580 85699696 -132337462 - FLAM_A SINE Alu -14 119 1 405 0 0 0 chr3 85700093 85700138 -132337020 + (TC)n Simple_repeat Simple_repeat 2 46 0 334 241 99 73 chr3 85700315 85700506 -132336652 - MLT1K LTR MaLR 0 588 393 544 227 34 92 chr3 85700595 85700802 -132336356 - MLT1K LTR MaLR -393 195 1 382 249 21 98 chr3 85701428 85701621 -132335537 + L1ME4a LINE L1 5708 5885 -236 2249 81 7 13 chr3 85701640 85701949 -132335209 - AluSq SINE Alu -6 307 1 625 281 11 22 chr3 85701986 85702171 -132334987 + MLT1A2 LTR MaLR 1 183 -191 1625 243 74 14 chr3 85702178 85702611 -132334547 - MLT1E LTR MaLR -134 459 1 1991 116 3 23 chr3 85702785 85703088 -132334070 - AluSx SINE Alu -15 297 1 1594 199 0 0 chr3 85703126 85703407 -132333751 - AluJo SINE Alu -30 282 2 687 244 14 62 chr3 85703414 85703623 -132333535 - L1ME3A LINE L1 -5 6165 5967 262 203 0 17 chr3 85704033 85704092 -132333066 - MER33 DNA MER1_type 0 363 306 1414 189 0 49 chr3 85704095 85704402 -132332756 + AluJo SINE Alu 3 294 -18 721 181 56 73 chr3 85704474 85704762 -132332396 - MER33 DNA MER1_type -41 283 1 207 0 0 0 chr3 85704800 85704823 -132332335 + (A)n Simple_repeat Simple_repeat 1 23 0 193 333 111 28 chr3 85704902 85705010 -132332148 - L2 LINE L2 -66 3206 3090 869 137 0 22 chr3 85705531 85705670 -132331488 + FLAM_C SINE Alu 1 136 -7 2020 125 0 22 chr3 85705786 85706105 -132331053 - AluSx SINE Alu 0 312 1 453 307 50 17 chr3 85706131 85706310 -132330848 + MLT1I LTR MaLR 225 409 0 2170 82 0 0 chr3 85706537 85706844 -132330314 - AluSg SINE Alu 0 307 1 1432 161 40 118 chr3 85707081 85707124 -132330034 + MLT1A1 LTR MaLR 1 46 -319 2053 110 10 3 chr3 85707124 85707416 -132329742 - AluSx SINE Alu -18 294 1 1432 161 40 118 chr3 85707416 85707752 -132329406 + MLT1A1 LTR MaLR 46 350 -15 556 280 103 92 chr3 85707821 85708417 -132328741 + L2 LINE L2 2677 3271 -1 2310 89 0 16 chr3 85708793 85709109 -132328049 + AluSp SINE Alu 1 311 -2 243 242 0 0 chr3 85709326 85709388 -132327770 - L1MA10 LINE L1 -1 6333 6272 356 183 9 73 chr3 85709393 85709507 -132327651 - MIR SINE MIR -73 135 61 193 306 204 14 chr3 85709913 85710129 -132327029 + MIR SINE MIR 2 258 -4 258 272 9 53 chr3 85710673 85710787 -132326371 + CT-rich Low_complexity Low_complexity 6 114 0 1795 167 32 60 chr3 85710797 85711199 -132325959 - MLT1C LTR MaLR -5 462 72 207 204 0 0 chr3 85711200 85711244 -132325914 + T-rich Low_complexity Low_complexity 1 44 0 195 226 21 21 chr3 85711390 85711483 -132325675 + CT-rich Low_complexity Low_complexity 5 97 0 398 197 105 20 chr3 85711766 85711873 -132325285 - L1MC5 LINE L1 -32 7929 7804 279 0 0 0 chr3 85711873 85711904 -132325254 + (TC)n Simple_repeat Simple_repeat 2 32 0 398 197 105 20 chr3 85711904 85711948 -132325210 - L1MC5 LINE L1 -157 7804 7765 590 115 0 52 chr3 85711950 85712046 -132325112 + AluSq/x SINE Alu 51 141 -172 2088 112 0 7 chr3 85712047 85712352 -132324806 + AluSx SINE Alu 1 303 -9 984 159 32 32 chr3 85712362 85712551 -132324607 - L1MC1 LINE L1 -6 6327 6139 1851 169 0 3 chr3 85712587 85712900 -132324258 - AluJo SINE Alu 0 312 1 370 214 83 0 chr3 85712998 85713082 -132324076 + L1MC5 LINE L1 7272 7362 -599 204 262 7 121 chr3 85713131 85713280 -132323878 - MIR SINE MIR -42 220 89 * 344 246 0 0 chr3 85713273 85713342 -132323816 + MIR SINE MIR 32 100 -108 358 256 0 105 chr3 85713373 85713464 -132323694 - MER94 DNA DNA -15 119 41 2003 107 0 4 chr3 85713464 85713784 -132323374 + AluSx SINE Alu 3 321 0 358 256 0 105 chr3 85713784 85713822 -132323336 - MER94 DNA DNA -93 41 1 643 263 17 11 chr3 85713858 85714033 -132323125 + MER5B DNA MER1_type 1 176 -2 202 259 17 17 chr3 85714070 85714128 -132323030 + MER5A DNA MER1_type 28 85 -104 925 199 25 130 chr3 85714139 85714216 -132322942 - MLT1A1 LTR MaLR 0 365 282 1789 140 37 3 chr3 85714216 85714516 -132322642 + AluSx SINE Alu 3 312 0 925 199 25 130 chr3 85714516 85714754 -132322404 - MLT1A1 LTR MaLR -83 282 83 294 113 0 38 chr3 85714894 85714947 -132322211 - MLT1A1 LTR MaLR -377 51 1 186 263 70 18 chr3 85714964 85715021 -132322137 + MER5A DNA MER1_type 128 187 -2 803 159 0 8 chr3 85715119 85715251 -132321907 - FRAM SINE Alu -2 174 44 369 187 37 93 chr3 85715251 85715358 -132321800 - MIR SINE MIR -120 142 42 1954 140 0 9 chr3 85715565 85715880 -132321278 + AluJo SINE Alu 1 312 0 730 270 152 52 chr3 85716030 85716496 -132320662 - MLT1H LTR MaLR -23 526 14 508 278 45 0 chr3 85716633 85716766 -132320392 - L2 LINE L2 0 3313 3175 1364 120 14 10 chr3 85717013 85717221 -132319937 - MER2 DNA MER2_type -135 210 2 1931 197 114 0 chr3 85717222 85717634 -132319524 - MLT1F1 LTR MaLR -31 536 78 1348 128 0 0 chr3 85717659 85717854 -132319304 - AluSg/x SINE Alu -24 286 92 314 177 32 0 chr3 85717854 85717916 -132319242 - MLT1F1 LTR MaLR -503 64 1 461 306 11 38 chr3 85717986 85718169 -132318989 - MER5A DNA MER1_type -1 188 11 195 294 20 0 chr3 85718143 85718194 -132318964 + MER5A DNA MER1_type 115 166 -23 * 385 274 24 8 chr3 85718375 85718499 -132318659 - MER117 DNA MER1_type -70 127 2 320 204 106 18 chr3 85719520 85719633 -132317525 - L1ME4a LINE L1 -49 6072 5950 1091 216 0 10 chr3 85719686 85719890 -132317268 - MER20 DNA MER1_type -17 202 1 2146 110 0 22 chr3 85719894 85720213 -132316945 + AluSx SINE Alu 1 312 0 378 0 0 0 chr3 85720229 85720271 -132316887 + (CA)n Simple_repeat Simple_repeat 2 43 0 329 259 105 18 chr3 85720524 85720672 -132316486 + MIR SINE MIR 78 248 -14 269 244 35 52 chr3 85720714 85720829 -132316329 - L1ME4a LINE L1 -297 5824 5712 1757 148 7 26 chr3 85721288 85721593 -132315565 + AluJb SINE Alu 11 309 -3 260 244 167 54 chr3 85721715 85721883 -132315275 + MIR SINE MIR 58 244 -18 446 259 53 35 chr3 85721924 85722094 -132315064 + MIR3 SINE MIR 30 202 -6 391 322 39 22 chr3 85722233 85722413 -132314745 - MIR SINE MIR 0 262 80 502 286 143 0 chr3 85722448 85722609 -132314549 - MER5A DNA MER1_type 0 189 6 589 183 0 0 chr3 85723751 85723855 -132313303 + U13 snRNA snRNA 1 104 0 757 254 6 0 chr3 85724059 85724236 -132312922 + MER45A DNA AcHobo 1 178 0 608 252 8 34 chr3 85724706 85724940 -132312218 + L1MC4 LINE L1 7689 7916 -126 685 217 8 0 chr3 85725253 85725382 -132311776 + AluJo SINE Alu 2 131 -181 195 47 23 47 chr3 85725415 85725458 -132311700 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 655 241 181 11 chr3 85725652 85725917 -132311241 - LTR16C LTR ERVL -2 489 180 344 296 30 15 chr3 85725998 85726133 -132311025 - L2 LINE L2 0 3272 3136 1947 146 0 0 chr3 85726548 85726857 -132310301 + AluSx SINE Alu 1 309 -3 740 163 31 75 chr3 85727316 85727476 -132309682 + AluJo SINE Alu 137 289 -23 1163 139 0 0 chr3 85727482 85727640 -132309518 + U1 snRNA snRNA 6 163 -2 205 191 48 0 chr3 85727644 85727707 -132309451 + A-rich Low_complexity Low_complexity 2 67 0 1911 156 7 0 chr3 85728066 85728374 -132308784 - AluSx SINE Alu -2 310 1 982 254 75 17 chr3 85729056 85729305 -132307853 + MER5C DNA MER1_type 13 283 -41 2063 120 0 0 chr3 85729305 85729605 -132307553 + AluSx SINE Alu 1 300 -12 982 254 75 17 chr3 85729605 85729650 -132307508 + MER5C DNA MER1_type 283 324 0 207 146 42 0 chr3 85729681 85729729 -132307429 + (TG)n Simple_repeat Simple_repeat 1 50 0 1939 148 0 0 chr3 85730950 85731248 -132305910 - AluJb SINE Alu -14 298 1 763 236 80 77 chr3 85731277 85731616 -132305542 + MLT1H LTR MaLR 208 547 -2 186 43 0 0 chr3 85731618 85731641 -132305517 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 253 228 53 0 chr3 85731643 85731700 -132305458 - L2 LINE L2 0 3313 3254 235 306 93 28 chr3 85731718 85731826 -132305332 + L2 LINE L2 3153 3267 -5 338 234 21 21 chr3 85731853 85731947 -132305211 + L1ME LINE L1 5579 5672 -449 2190 176 88 5 chr3 85732382 85732802 -132304356 - MLT2C2 LTR ERVL -8 456 2 259 211 40 26 chr3 85732867 85732943 -132304215 + L1ME4a LINE L1 5944 6020 -101 1967 234 108 2 chr3 85733058 85733532 -132303626 - MER90 LTR ERV1 0 614 91 1285 136 39 0 chr3 85733877 85734083 -132303075 - AluSx SINE Alu -13 299 86 705 117 0 0 chr3 85734318 85734412 -132302746 - AluSx SINE Alu -217 95 2 338 205 8 68 chr3 85734681 85734798 -132302360 + L1ME LINE L1 5708 5817 -304 1662 166 38 0 chr3 85734896 85735186 -132301972 - AluJo SINE Alu -5 307 7 679 168 0 0 chr3 85735387 85735488 -132301670 + AluJ/FLAM SINE Alu 2 102 -210 450 276 52 0 chr3 85735601 85735717 -132301441 - L2 LINE L2 0 3313 3192 324 310 281 5 chr3 85736001 85736204 -132300954 + MIR SINE MIR 2 260 -2 276 216 103 21 chr3 85736431 85736528 -132300630 - MIR SINE MIR -57 205 101 1108 222 65 103 chr3 85737271 85737840 -132299318 - MLT1H1 LTR MaLR -9 546 1 395 248 14 170 chr3 85738735 85738953 -132298205 - MIR SINE MIR 0 262 79 2077 126 0 0 chr3 85738965 85739267 -132297891 + AluSx SINE Alu 11 312 0 239 277 0 15 chr3 85739277 85739342 -132297816 - MIR SINE MIR -170 92 29 510 192 225 33 chr3 85739343 85739494 -132297664 + MER5A DNA MER1_type 4 183 -6 1180 257 129 39 chr3 85739828 85740249 -132296909 - L1ME2 LINE L1 -85 6079 5603 1709 154 6 46 chr3 85740249 85740573 -132296585 - AluSx SINE Alu -1 311 1 1180 257 129 39 chr3 85740573 85740661 -132296497 - L1ME2 LINE L1 -561 5603 5524 803 204 134 3 chr3 85741347 85741584 -132295574 - L1MD3 LINE L1 0 8042 7798 339 229 51 34 chr3 85741664 85741782 -132295376 - L1ME3 LINE L1 -83 6079 5960 * 607 267 47 47 chr3 85741774 85742010 -132295148 - L1MC4 LINE L1 -290 7752 7517 238 259 86 60 chr3 85742040 85742156 -132295002 + L2 LINE L2 2891 3009 -263 777 164 0 0 chr3 85742261 85742383 -132294775 + FLAM_C SINE Alu 7 128 -15 1393 258 64 20 chr3 85742790 85743182 -132293976 - MLT1G1 LTR MaLR -185 410 2 289 308 0 0 chr3 85743184 85743262 -132293896 - MIR SINE MIR -182 80 3 691 264 67 0 chr3 85743787 85743965 -132293193 - MIR SINE MIR -10 252 63 928 137 0 16 chr3 85744000 85744183 -132292975 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 4094 126 30 16 chr3 85745071 85745640 -132291518 - Tigger3(Golem) DNA MER2_type 0 3029 2448 2016 116 3 22 chr3 85745640 85745951 -132291207 + AluSx SINE Alu 1 305 -7 4094 126 30 16 chr3 85745951 85746049 -132291109 - Tigger3(Golem) DNA MER2_type -581 2448 2353 842 220 23 6 chr3 85746053 85746230 -132290928 + AluJo SINE Alu 38 217 -95 586 122 26 0 chr3 85746359 85746474 -132290684 + GA-rich Low_complexity Low_complexity 3 120 0 452 291 37 92 chr3 85746474 85746723 -132290435 - L2 LINE L2 -63 3250 3016 2134 115 7 0 chr3 85746723 85747028 -132290130 - AluSx SINE Alu -5 307 1 452 291 37 92 chr3 85747028 85747049 -132290109 - L2 LINE L2 -297 3016 2995 392 277 88 0 chr3 85747271 85747408 -132289750 + MIR SINE MIR 1 149 -113 308 191 71 0 chr3 85748203 85748287 -132288871 - LTR37B LTR ERV1 -1 467 378 1112 228 24 102 chr3 85748287 85748738 -132288420 - LTR37B LTR ERV1 -47 421 6 357 273 36 138 chr3 85748900 85749153 -132288005 + L2 LINE L2 2994 3220 -52 755 145 42 0 chr3 85749153 85749296 -132287862 + GA-rich Low_complexity Low_complexity 1 153 -20 1389 164 42 87 chr3 85749296 85749437 -132287721 + AluJo SINE Alu 5 151 -151 2181 80 0 7 chr3 85749437 85749724 -132287434 + AluSc SINE Alu 1 285 -24 1389 164 42 87 chr3 85749724 85749893 -132287265 + AluJo SINE Alu 151 301 -1 755 145 42 0 chr3 85749893 85749915 -132287243 + GA-rich Low_complexity Low_complexity 153 173 0 201 176 0 0 chr3 85750719 85750753 -132286405 + T-rich Low_complexity Low_complexity 1 34 0 2136 112 0 0 chr3 85750915 85751218 -132285940 - AluSx SINE Alu -9 303 1 249 173 58 19 chr3 85751261 85751313 -132285845 + MLT1K LTR MaLR 180 233 -355 596 93 12 0 chr3 85751729 85751815 -132285343 - AluS SINE Alu -225 88 2 226 284 0 30 chr3 85751883 85751950 -132285208 - MER5A DNA MER1_type -13 176 112 730 263 54 5 chr3 85751956 85752180 -132284978 + MIR SINE MIR 12 246 -16 2117 95 3 7 chr3 85752180 85752486 -132284672 + AluY SINE Alu 1 305 -6 223 275 62 25 chr3 85752518 85752598 -132284560 - MER5A DNA MER1_type -102 87 5 210 37 0 0 chr3 85752878 85752905 -132284253 + (CA)n Simple_repeat Simple_repeat 2 28 0 375 252 63 31 chr3 85752916 85753075 -132284083 - L1ME4a LINE L1 -226 5895 5732 2310 82 3 0 chr3 85753075 85753381 -132283777 - AluY SINE Alu -4 307 1 374 358 42 0 chr3 85753630 85753820 -132283338 + MIR SINE MIR 48 245 -17 2317 83 0 0 chr3 85754150 85754450 -132282708 - AluSx SINE Alu -12 300 1 22 0 0 0 chr3 85755314 85755336 -132281822 + AT_rich Low_complexity Low_complexity 1 22 0 801 160 23 0 chr3 85755412 85755543 -132281615 - AluJb SINE Alu -178 134 1 326 285 79 36 chr3 85755543 85755708 -132281450 - MIR SINE MIR -3 259 88 617 124 11 0 chr3 85755721 85755810 -132281348 - 5S rRNA rRNA -31 90 1 1278 249 144 69 chr3 85755820 85756440 -132280718 - L1ME3A LINE L1 0 6170 5495 2034 107 0 3 chr3 85756440 85756731 -132280427 + AluSg SINE Alu 1 290 -20 1278 249 144 69 chr3 85756731 85756778 -132280380 - L1ME3A LINE L1 -675 5495 5453 243 262 16 0 chr3 85756838 85756899 -132280259 + L2 LINE L2 3211 3272 0 470 302 42 56 chr3 85757626 85757690 -132279468 - MIR SINE MIR -4 258 195 1981 135 3 6 chr3 85757690 85758001 -132279157 - AluJb SINE Alu -2 310 1 470 302 42 56 chr3 85758001 85758151 -132279007 - MIR SINE MIR -67 195 47 856 245 209 17 chr3 85758151 85758605 -132278553 - MLT1H1 LTR MaLR 0 555 13 214 137 0 59 chr3 85758741 85758792 -132278366 + (GGAA)n Simple_repeat Simple_repeat 3 50 0 341 308 98 8 chr3 85758793 85758926 -132278232 - MIR3 SINE MIR -23 185 41 2000 147 0 0 chr3 85759072 85759384 -132277774 + AluSx SINE Alu 1 312 0 498 301 39 48 chr3 85760008 85760237 -132276921 + MIR SINE MIR 17 243 -19 26 0 0 0 chr3 85760372 85760398 -132276760 + AT_rich Low_complexity Low_complexity 1 26 0 34 0 0 0 chr3 85760414 85760448 -132276710 + AT_rich Low_complexity Low_complexity 1 34 0 983 161 0 0 chr3 85760455 85760610 -132276548 - FRAM SINE Alu -22 154 1 293 272 128 28 chr3 85760629 85760919 -132276239 - L1ME4a LINE L1 -6 6115 5797 1513 122 13 25 chr3 85760922 85761160 -132275998 + LTR43 LTR ERV1 1 235 -367 812 86 9 0 chr3 85761161 85761277 -132275881 - AluSp/q SINE Alu -7 306 190 271 174 193 28 chr3 85761278 85761387 -132275771 - L1ME4a LINE L1 -468 5653 5527 188 196 59 0 chr3 85761423 85761474 -132275684 - L2 LINE L2 -4 3309 3256 555 303 12 0 chr3 85761806 85761968 -132275190 + MER117 DNA MER1_type 15 178 -19 784 241 49 10 chr3 85762613 85762816 -132274342 - MIR SINE MIR -12 250 40 1498 182 29 11 chr3 85763206 85763486 -132273672 - AluJo SINE Alu -22 290 6 197 227 0 0 chr3 85763492 85763536 -132273622 - L2 LINE L2 -8 3305 3262 852 213 28 28 chr3 85763638 85763816 -132273342 - LTR16C LTR ERVL -27 464 284 2674 155 102 10 chr3 85763816 85764327 -132272831 - MER74A LTR ERVL 0 558 1 852 213 28 28 chr3 85764327 85764359 -132272799 - LTR16C LTR ERVL -206 285 254 2321 77 0 0 chr3 85764422 85764721 -132272437 - AluY SINE Alu -12 299 1 2121 127 61 48 chr3 85764976 85765354 -132271804 + MLT1B LTR MaLR 1 383 -7 591 273 123 43 chr3 85765479 85765516 -132271642 - Charlie8 DNA MER1_type -65 276 243 1935 110 0 7 chr3 85765516 85765848 -132271310 - AluSg SINE Alu 0 330 1 591 273 123 43 chr3 85765848 85766062 -132271096 - Charlie8 DNA MER1_type -98 243 4 466 231 17 17 chr3 85766144 85766261 -132270897 + MIR SINE MIR 23 139 -123 282 217 14 0 chr3 85766833 85766902 -132270256 + Charlie8 DNA MER1_type 97 166 -2251 596 257 73 34 chr3 85767103 85767309 -132269849 + MIR SINE MIR 21 234 -28 263 122 20 0 chr3 85767332 85767381 -132269777 - MIR SINE MIR -48 214 165 2336 60 40 0 chr3 85767408 85767706 -132269452 + AluY SINE Alu 1 310 -1 529 341 62 4 chr3 85767978 85768204 -132268954 - MIR SINE MIR -3 259 21 685 283 92 29 chr3 85768573 85768888 -132268270 - MLT1K LTR MaLR -86 502 168 214 280 0 0 chr3 85769046 85769096 -132268062 + MIR SINE MIR 106 155 -107 558 150 31 131 chr3 85769096 85769162 -132267996 - MLT1A2 LTR MaLR 0 374 303 1825 158 7 3 chr3 85769162 85769472 -132267686 + AluJo SINE Alu 1 311 -1 558 150 31 131 chr3 85769472 85769488 -132267670 - MLT1A2 LTR MaLR -71 303 287 2733 116 32 25 chr3 85769488 85769682 -132267476 + Tigger2a DNA MER2_type 1 192 -2516 1840 89 8 4 chr3 85769682 85769939 -132267219 - AluSp SINE Alu -11 302 45 2733 116 32 25 chr3 85769939 85770175 -132266983 + Tigger2a DNA MER2_type 192 434 0 558 150 31 131 chr3 85770175 85770251 -132266907 - MLT1A2 LTR MaLR -87 287 231 609 179 8 8 chr3 85770360 85770477 -132266681 + FRAM SINE Alu 58 174 -2 421 118 0 29 chr3 85770493 85770561 -132266597 - Tigger3(Golem) DNA MER2_type -686 2343 2278 * 767 148 0 0 chr3 85770552 85770660 -132266498 - Tigger3(Golem) DNA MER2_type -2921 108 1 760 235 30 45 chr3 85770687 85770887 -132266271 - LTR16C LTR ERVL -4 487 291 26 30 0 0 chr3 85770986 85771019 -132266139 + AT_rich Low_complexity Low_complexity 1 33 0 510 287 102 0 chr3 85772425 85772582 -132264576 - MIR SINE MIR -89 173 1 1526 249 27 49 chr3 85772991 85773508 -132263650 + MLT1H LTR MaLR 3 549 0 180 143 0 29 chr3 85774457 85774492 -132262666 - L2 LINE L2 -166 3147 3114 379 305 94 0 chr3 85774557 85774685 -132262473 - L2 LINE L2 -1 3271 3132 307 329 79 0 chr3 85774883 85775023 -132262135 + MIR SINE MIR 11 161 -101 846 271 56 70 chr3 85775050 85775493 -132261665 + MLT1J LTR MaLR 37 473 -38 273 247 0 37 chr3 85775530 85775611 -132261547 + MIR SINE MIR 164 241 -21 1694 191 10 59 chr3 85775662 85775951 -132261207 - MLT1A2 LTR MaLR -1 373 106 1711 145 26 10 chr3 85775951 85776255 -132260903 + AluJo SINE Alu 1 309 -3 1694 191 10 59 chr3 85776255 85776357 -132260801 - MLT1A2 LTR MaLR -268 106 1 455 243 186 36 chr3 85776766 85777176 -132259982 - LTR33 LTR ERVL 0 521 23 509 144 0 22 chr3 85777187 85777277 -132259881 - MIR SINE MIR -66 196 109 21 0 0 0 chr3 85777295 85777316 -132259842 + AT_rich Low_complexity Low_complexity 1 21 0 203 338 0 0 chr3 85777447 85777515 -132259643 - MIR SINE MIR -91 171 104 186 219 0 0 chr3 85777507 85777539 -132259619 + L3 LINE CR1 1519 1550 -27 * 867 301 77 24 chr3 85777909 85778425 -132258733 - MLT1K LTR MaLR -1 587 9 405 39 0 0 chr3 85778994 85779045 -132258113 + (TGAA)n Simple_repeat Simple_repeat 2 52 0 2033 94 9 85 chr3 85779245 85779436 -132257722 - AluSx SINE Alu -7 305 148 1921 148 0 16 chr3 85779436 85779746 -132257412 - AluSx SINE Alu -5 307 3 2033 94 9 85 chr3 85779746 85779884 -132257274 - AluSx SINE Alu -164 148 1 403 319 28 85 chr3 85780032 85780174 -132256984 + MIR SINE MIR 14 146 -62 210 252 183 26 chr3 85780212 85780327 -132256831 + L2 LINE L2 2457 2589 -725 1098 287 121 32 chr3 85780470 85781093 -132256065 + L2 LINE L2 2617 3308 -5 180 176 0 0 chr3 85781094 85781128 -132256030 + GA-rich Low_complexity Low_complexity 2 35 0 180 250 0 148 chr3 85781128 85781202 -132255956 + MIR SINE MIR 154 237 -25 2216 87 0 0 chr3 85781202 85781488 -132255670 + AluSx SINE Alu 1 286 -26 333 68 0 0 chr3 85781488 85781532 -132255626 + (CAAT)n Simple_repeat Simple_repeat 2 45 0 180 250 0 148 chr3 85781532 85781584 -132255574 + MIR SINE MIR 235 262 0 336 188 0 0 chr3 85781617 85781686 -132255472 + (CA)n Simple_repeat Simple_repeat 1 69 0 1266 165 0 18 chr3 85782393 85782617 -132254541 - AluJb SINE Alu -8 304 85 2020 115 0 14 chr3 85782621 85782967 -132254191 - AluSx SINE Alu 0 342 1 769 243 117 22 chr3 85783233 85783455 -132253703 - MIR SINE MIR -12 250 8 1700 144 0 52 chr3 85783761 85784087 -132253071 - AluJo SINE Alu -3 309 1 887 229 103 9 chr3 85784449 85784672 -132252486 - MIR SINE MIR -6 256 13 215 299 15 0 chr3 85785128 85785195 -132251963 - L2 LINE L2 -212 3060 2993 1879 107 0 31 chr3 85785302 85785623 -132251535 + AluSx SINE Alu 1 312 0 508 245 90 87 chr3 85785625 85785864 -132251294 + MLT1L LTR MaLR 111 435 -180 261 329 41 81 chr3 85786090 85786330 -132250828 - L2 LINE L2 -348 2966 2739 231 114 0 0 chr3 85786330 85786365 -132250793 + (TG)n Simple_repeat Simple_repeat 2 36 0 261 329 41 81 chr3 85786365 85786419 -132250739 - L2 LINE L2 -575 2739 2684 995 243 35 44 chr3 85786453 85786770 -132250388 + L1ME3 LINE L1 5542 5855 -307 1272 264 50 41 chr3 85786819 85787007 -132250151 - LTR16B LTR ERVL -17 447 262 1989 116 38 0 chr3 85787007 85787300 -132249858 - AluSx SINE Alu -8 304 1 1272 264 50 41 chr3 85787300 85787554 -132249604 - LTR16B LTR ERVL -202 262 1 448 222 12 102 chr3 85787576 85787743 -132249415 + L1ME3 LINE L1 5928 6079 -83 267 313 88 0 chr3 85787808 85787888 -132249270 - L2 LINE L2 -9 3263 3177 1231 162 5 0 chr3 85789460 85789657 -132247501 + Tigger2 DNA MER2_type 2511 2708 -10 1231 206 25 72 chr3 85789660 85789981 -132247177 - MLT1A2 LTR MaLR -68 306 1 232 272 87 33 chr3 85789982 85790074 -132247084 + MIR SINE MIR 152 248 -14 1034 138 6 18 chr3 85790101 85790268 -132246890 + AluJo SINE Alu 5 169 -143 1695 241 54 11 chr3 85790300 85790765 -132246393 - L1ME1 LINE L1 -23 6143 5659 1780 166 3 50 chr3 85790841 85791135 -132246023 + L1MB8 LINE L1 5828 6103 -75 2276 71 0 10 chr3 85791135 85791431 -132245727 + AluSc SINE Alu 1 293 -16 1780 166 3 50 chr3 85791431 85791497 -132245661 + L1MB8 LINE L1 6103 6171 -7 181 333 36 36 chr3 85791613 85791751 -132245407 - L2 LINE L2 0 3313 3176 896 230 15 20 chr3 85791850 85792050 -132245108 - MIR SINE MIR -56 206 8 1538 187 72 29 chr3 85792311 85792685 -132244473 + MLT1B LTR MaLR 1 390 0 2146 182 90 80 chr3 85792841 85793463 -132243695 - MER63 DNA MER1_type 0 1060 433 1382 103 0 15 chr3 85793463 85793666 -132243492 - AluSq SINE Alu -10 303 104 22004 37 3 0 chr3 85793666 85797101 -132240057 - L1PA5 LINE L1 0 6154 2714 22720 75 1 5 chr3 85797201 85800140 -132237018 - L1P LINE L1 -3207 2939 11 880 103 0 0 chr3 85800146 85800263 -132236895 - AluSq SINE Alu -196 117 1 1051 227 99 0 chr3 85800263 85800545 -132236613 - MER63 DNA MER1_type -751 310 1 2322 204 52 14 chr3 85800814 85801369 -132235789 + L1ME1 LINE L1 5586 6161 -5 633 210 112 0 chr3 85801383 85801526 -132235632 + MIR SINE MIR 75 233 -29 435 159 14 0 chr3 85801542 85801611 -132235547 - MER44D DNA MER2_type 0 705 636 2043 120 17 0 chr3 85801615 85801941 -132235217 - AluSx SINE Alu 0 335 5 1017 83 0 0 chr3 85801976 85802108 -132235050 - AluY SINE Alu -179 132 1 1318 155 20 92 chr3 85802109 85802413 -132234745 - MER44D DNA MER2_type -57 552 1 363 198 0 93 chr3 85802470 85802556 -132234602 - L2 LINE L2 0 3313 3236 588 146 164 0 chr3 85802557 85802667 -132234491 + FLAM_C SINE Alu 2 129 -14 189 263 50 71 chr3 85802809 85802908 -132234250 + MER5A DNA MER1_type 30 126 -63 3126 132 102 2 chr3 85803173 85803743 -132233415 + L1MA6 LINE L1 5674 6300 0 387 288 55 52 chr3 85803758 85803972 -132233186 - MIR SINE MIR -16 246 34 897 272 104 37 chr3 85803993 85804397 -132232761 - L2 LINE L2 0 3313 2883 558 252 172 44 chr3 85804401 85804841 -132232317 + MLT1H LTR MaLR 5 549 0 259 258 31 21 chr3 85804841 85804938 -132232220 - L2 LINE L2 -426 2888 2791 225 159 0 0 chr3 85804964 85805008 -132232150 + CT-rich Low_complexity Low_complexity 1 44 0 1419 174 116 0 chr3 85805008 85805283 -132231875 - AluJb SINE Alu -5 307 1 1732 294 77 41 chr3 85805291 85805337 -132231821 - L2 LINE L2 -537 2777 2734 1987 101 42 0 chr3 85805337 85805624 -132231534 + AluSx SINE Alu 1 299 -13 1732 294 77 41 chr3 85805624 85806424 -132230734 - L2 LINE L2 -580 2734 1901 1933 154 0 0 chr3 85806710 85807022 -132230136 + AluSx SINE Alu 1 312 0 297 68 0 0 chr3 85807045 85807089 -132230069 + (GA)n Simple_repeat Simple_repeat 2 45 0 683 203 0 0 chr3 85807141 85807259 -132229899 + FLAM_C SINE Alu 13 130 -13 1135 130 15 60 chr3 85807359 85807559 -132229599 + MER20 DNA MER1_type 29 219 0 384 266 0 0 chr3 85808204 85808362 -132228796 + (CCA)n Simple_repeat Simple_repeat 1 158 0 333 283 0 0 chr3 85808377 85808557 -132228601 + (CCA)n Simple_repeat Simple_repeat 1 180 0 259 222 0 0 chr3 85808570 85808624 -132228534 + (CACCAT)n Simple_repeat Simple_repeat 4 57 0 488 241 0 6 chr3 85808626 85808796 -132228362 + (CCA)n Simple_repeat Simple_repeat 3 171 0 380 90 64 0 chr3 85809567 85809645 -132227513 + CT-rich Low_complexity Low_complexity 1 83 0 233 262 107 43 chr3 85810113 85810286 -132226872 - MIR SINE MIR -25 237 38 636 278 89 0 chr3 85810747 85810916 -132226242 + MIR SINE MIR 79 262 0 897 143 0 0 chr3 85811012 85811138 -132226020 + AluJb SINE Alu 1 126 -186 573 208 35 46 chr3 85811657 85811830 -132225328 - L1MC5 LINE L1 -184 7777 7607 24 0 0 0 chr3 85812584 85812608 -132224550 + AT_rich Low_complexity Low_complexity 1 24 0 438 293 75 11 chr3 85812757 85812931 -132224227 + LTR16C LTR ERVL 243 427 -64 275 212 15 0 chr3 85812996 85813062 -132224096 + LTR16C LTR ERVL 420 486 -5 723 191 8 0 chr3 85813117 85813248 -132223910 - FLAM_C SINE Alu 0 133 2 24 0 0 0 chr3 85813389 85813413 -132223745 + AT_rich Low_complexity Low_complexity 1 24 0 338 252 45 98 chr3 85813731 85813912 -132223246 + L1ME4a LINE L1 5815 5977 -144 2361 106 0 3 chr3 85813912 85814215 -132222943 + AluSx SINE Alu 1 302 -10 338 252 45 98 chr3 85814215 85814319 -132222839 + L1ME4a LINE L1 5977 6085 -36 416 273 56 7 chr3 85814758 85814901 -132222257 - MER5A DNA MER1_type 0 189 40 448 290 115 5 chr3 85815035 85815235 -132221923 - MIR SINE MIR -13 249 28 210 258 32 118 chr3 85816332 85816425 -132220733 - MIR SINE MIR -1 261 177 599 268 156 5 chr3 85817024 85817248 -132219910 - L2 LINE L2 -747 2567 2310 1403 266 153 81 chr3 85817255 85817857 -132219301 - MLT1E2 LTR MaLR -8 618 2 353 312 72 7 chr3 85818338 85818476 -132218682 + MIR SINE MIR 102 248 -14 277 264 19 85 chr3 85820684 85820790 -132216368 + MIR SINE MIR 108 206 -56 1128 276 82 41 chr3 85821033 85821523 -132215635 + MLT1J LTR MaLR 2 511 0 695 316 41 8 chr3 85821620 85821864 -132215294 + Charlie8 DNA MER1_type 14 265 -2152 519 297 248 18 chr3 85821908 85822235 -132214923 + LTR16C LTR ERVL 50 451 -40 449 209 0 70 chr3 85822410 85822539 -132214619 + Charlie8 DNA MER1_type 372 491 -1926 311 308 56 49 chr3 85822959 85823102 -132214056 + L2 LINE L2 3121 3264 -8 667 247 242 0 chr3 85823329 85823519 -132213639 + MIR SINE MIR 19 254 -8 2271 105 10 13 chr3 85823520 85823824 -132213334 - AluSx SINE Alu -9 303 1 357 219 131 58 chr3 85823887 85824024 -132213134 + L1ME4a LINE L1 5963 6109 -12 2641 107 6 3 chr3 85824203 85824566 -132212592 + THE1B LTR MaLR 1 364 0 197 296 42 0 chr3 85824834 85824905 -132212253 - L2 LINE L2 0 3313 3240 607 295 82 9 chr3 85824960 85825279 -132211879 + LTR33 LTR ERVL 13 354 -167 375 212 121 0 chr3 85825410 85825509 -132211649 - MIR SINE MIR -105 157 47 350 294 9 0 chr3 85826166 85826275 -132210883 + MER94 DNA DNA 24 133 -1 1509 218 59 40 chr3 85826386 85826535 -132210623 - Charlie4a DNA MER1_type -1459 502 357 2493 39 13 19 chr3 85826535 85826845 -132210313 + AluY SINE Alu 1 308 -3 1509 218 59 40 chr3 85826845 85827150 -132210008 - Charlie4a DNA MER1_type -1604 357 39 747 176 0 0 chr3 85827236 85827355 -132209803 - FLAM_C SINE Alu -23 120 2 332 270 71 0 chr3 85828447 85828573 -132208585 + LTR16C LTR ERVL 356 490 -1 427 255 48 35 chr3 85829193 85829338 -132207820 - L2 LINE L2 -2 3311 3165 340 235 20 10 chr3 85829375 85829460 -132207698 - MIR SINE MIR -56 206 118 1943 115 7 31 chr3 85829460 85829746 -132207412 + AluSx SINE Alu 1 279 -33 340 235 20 10 chr3 85829746 85829758 -132207400 - MIR SINE MIR -144 118 108 535 157 35 0 chr3 85829788 85829903 -132207255 + GA-rich Low_complexity Low_complexity 1 119 0 440 274 16 32 chr3 85829905 85830029 -132207129 - MIR SINE MIR -132 130 9 288 152 0 0 chr3 85830062 85830108 -132207050 - MER45 DNA AcHobo 0 1581 1536 1279 247 83 79 chr3 85830113 85830643 -132206515 - MER45C DNA AcHobo -321 632 101 2062 133 3 3 chr3 85830650 85830950 -132206208 + AluSx SINE Alu 1 300 -12 508 175 8 87 chr3 85830991 85831009 -132206149 - MER45C DNA AcHobo -835 118 100 1611 165 48 4 chr3 85831009 85831309 -132205849 + AluJb SINE Alu 1 312 0 508 175 8 87 chr3 85831309 85831415 -132205743 - MER45C DNA AcHobo -853 100 3 348 297 53 61 chr3 85831516 85831731 -132205427 - MIR SINE MIR -27 235 14 2349 229 43 35 chr3 85832122 85832660 -132204498 + MLT1F LTR MaLR 1 542 0 2138 135 0 0 chr3 85832821 85833118 -132204040 - AluSx SINE Alu -15 297 1 540 212 47 47 chr3 85833400 85833593 -132203565 - MLT1K LTR MaLR 0 588 396 231 256 0 132 chr3 85833761 85833890 -132203268 - MLT1K LTR MaLR -374 214 103 251 290 29 0 chr3 85833949 85834018 -132203140 - MIR SINE MIR -105 157 87 699 295 98 52 chr3 85834331 85834578 -132202580 + L2 LINE L2 2737 2971 -301 1890 157 0 39 chr3 85834578 85834890 -132202268 + AluSx SINE Alu 1 300 -12 699 295 98 52 chr3 85834890 85835159 -132201999 + L2 LINE L2 2971 3271 -1 223 171 24 0 chr3 85835159 85835200 -132201958 + GA-rich Low_complexity Low_complexity 6 47 0 278 256 15 53 chr3 85835408 85835541 -132201617 + GA-rich Low_complexity Low_complexity 1 128 0 551 255 0 27 chr3 85836464 85836613 -132200545 - MLT1K LTR MaLR -57 531 387 360 219 29 19 chr3 85836645 85836750 -132200408 - MLT1K LTR MaLR -278 310 205 186 310 71 32 chr3 85837096 85837251 -132199907 + L2 LINE L2 1805 1965 -1349 563 308 102 58 chr3 85837302 85838144 -132199014 + L2 LINE L2 2174 3080 -192 189 0 0 0 chr3 85838186 85838207 -132198951 + (TTTTC)n Simple_repeat Simple_repeat 3 23 0 2071 127 0 0 chr3 85838222 85838505 -132198653 - AluSx SINE Alu -29 283 1 352 314 24 24 chr3 85838608 85838732 -132198426 - L2 LINE L2 -12 3260 3137 1118 232 170 37 chr3 85838783 85839296 -132197862 + MLT1G1 LTR MaLR 1 578 -12 383 302 11 85 chr3 85839329 85839518 -132197640 + MIR3 SINE MIR 21 195 -13 231 235 20 0 chr3 85840191 85840242 -132196916 - L2 LINE L2 0 3272 3221 809 265 62 28 chr3 85840253 85840587 -132196571 - LTR16A1 LTR ERVL -12 476 119 415 188 152 0 chr3 85840671 85840783 -132196375 - MLT1L LTR MaLR -172 443 315 2232 117 0 0 chr3 85840895 85841186 -132195972 - AluSx SINE Alu -21 291 1 180 0 0 0 chr3 85841323 85841343 -132195815 + (A)n Simple_repeat Simple_repeat 1 20 0 711 270 117 36 chr3 85841429 85841821 -132195337 + MLT1K LTR MaLR 165 588 0 284 321 33 85 chr3 85841821 85842033 -132195125 - L2 LINE L2 -71 3201 3001 279 211 178 92 chr3 85842535 85842687 -132194471 + MIR SINE MIR 24 188 -74 307 132 0 38 chr3 85843312 85843365 -132193793 - Tigger3(Golem) DNA MER2_type -701 2328 2278 287 211 0 0 chr3 85843356 85843413 -132193745 - Tigger3(Golem) DNA MER2_type -2921 108 52 * 1688 95 99 12 chr3 85843413 85843665 -132193493 + AluSx SINE Alu 24 297 -15 2034 148 3 7 chr3 85843787 85844084 -132193074 + AluJo SINE Alu 1 296 -16 211 256 70 23 chr3 85844311 85844397 -132192761 - MIR SINE MIR -67 141 52 2459 94 0 3 chr3 85844473 85844781 -132192377 + AluSc SINE Alu 1 307 -2 1669 187 3 22 chr3 85844941 85845257 -132191901 + AluJb SINE Alu 3 312 0 826 284 140 25 chr3 85845294 85845731 -132191427 + L2 LINE L2 2827 3313 0 675 253 36 84 chr3 85845883 85845986 -132191172 - MIR SINE MIR -13 249 143 652 214 16 0 chr3 85845986 85846112 -132191046 + FLAM_A SINE Alu 1 128 -5 675 253 36 84 chr3 85846112 85846257 -132190901 - MIR SINE MIR -119 143 13 2174 117 3 7 chr3 85846351 85846649 -132190509 - AluSx SINE Alu -15 297 1 834 256 67 5 chr3 85848008 85848231 -132188927 + LTR16C LTR ERVL 254 490 -1 216 360 54 9 chr3 85848307 85848418 -132188740 - MER91A DNA MER1_type -51 145 30 450 299 21 14 chr3 85848572 85848716 -132188442 + MIR SINE MIR 3 147 -115 27 29 0 0 chr3 85849774 85849808 -132187350 + AT_rich Low_complexity Low_complexity 1 34 0 2486 62 7 3 chr3 85849808 85850116 -132187042 - AluY SINE Alu -2 309 1 1934 156 14 0 chr3 85850121 85850410 -132186748 - AluJo SINE Alu -17 295 3 198 103 0 0 chr3 85850781 85850810 -132186348 + (TC)n Simple_repeat Simple_repeat 2 30 0 708 278 44 24 chr3 85850907 85851112 -132186046 - MLT1K LTR MaLR -266 322 114 723 185 0 7 chr3 85851228 85851363 -132185795 - MER58 DNA MER1_type 0 2420 2287 370 211 0 130 chr3 85851357 85851402 -132185756 - MER58 DNA MER1_type -234 107 58 * 2284 117 0 7 chr3 85851402 85851710 -132185448 + AluSx SINE Alu 1 306 -6 370 211 0 130 chr3 85851710 85851787 -132185371 - MER58 DNA MER1_type -283 58 1 286 302 40 34 chr3 85852266 85852345 -132184813 + MLT1K LTR MaLR 439 521 -67 432 111 0 0 chr3 85852345 85852426 -132184732 + (CCTG)n Simple_repeat Simple_repeat 2 82 0 286 302 40 34 chr3 85852426 85852495 -132184663 + MLT1K LTR MaLR 521 588 0 441 264 216 30 chr3 85852575 85852904 -132184254 + MLT1H LTR MaLR 110 499 -50 354 308 15 30 chr3 85853353 85853486 -132183672 - L2 LINE L2 -8 3305 3175 434 344 18 6 chr3 85853550 85853713 -132183445 - MIR SINE MIR -35 227 63 338 167 59 0 chr3 85853854 85853926 -132183232 + MIR SINE MIR 116 189 -73 1449 140 44 0 chr3 85853944 85854172 -132182986 + AluJb SINE Alu 59 296 -16 2166 113 3 0 chr3 85854249 85854554 -132182604 - AluSx SINE Alu 0 306 1 268 81 0 0 chr3 85854762 85854799 -132182359 - tRNA-Glu-GAG tRNA tRNA -38 37 1 666 260 188 26 chr3 85855183 85855560 -132181598 - MLT1H LTR MaLR -2 547 110 972 282 47 76 chr3 85855640 85855709 -132181449 - MLT1K LTR MaLR 0 588 519 471 112 0 0 chr3 85855709 85855798 -132181360 + (CAGG)n Simple_repeat Simple_repeat 2 90 0 972 282 47 76 chr3 85855798 85856217 -132180941 - MLT1K LTR MaLR -69 519 114 710 193 0 7 chr3 85856333 85856468 -132180690 - MER58 DNA MER1_type 0 2420 2287 365 195 8 138 chr3 85856462 85856507 -132180651 - MER58 DNA MER1_type -2313 107 58 * 2277 122 0 6 chr3 85856507 85856818 -132180340 + AluSx SINE Alu 1 309 -3 365 195 8 138 chr3 85856818 85856895 -132180263 - MER58 DNA MER1_type -2362 58 1 2039 135 3 29 chr3 85856986 85857297 -132179861 + AluSx SINE Alu 1 303 -9 1914 173 20 12 chr3 85857496 85857837 -132179321 + MER2 DNA MER2_type 1 344 0 228 125 0 78 chr3 85858848 85858912 -132178246 + (CCCCG)n Simple_repeat Simple_repeat 5 63 0 297 293 102 24 chr3 85859460 85859627 -132177531 + MIR SINE MIR 15 194 -68 307 303 17 51 chr3 85859869 85860047 -132177111 - LTR16B LTR ERVL -268 196 25 760 328 58 22 chr3 85860140 85860585 -132176573 + MLT1K LTR MaLR 122 582 -6 402 290 9 9 chr3 85861039 85861146 -132176012 - MER5B DNA MER1_type -71 107 1 2230 117 3 0 chr3 85861301 85861600 -132175558 + AluSx SINE Alu 1 300 -12 219 143 24 24 chr3 85861647 85861689 -132175469 + L2 LINE L2 3213 3254 -18 1563 194 95 3 chr3 85861734 85862049 -132175109 - MER2 DNA MER2_type 0 344 1 853 123 171 34 chr3 85862075 85862221 -132174937 + FRAM SINE Alu 2 167 -9 320 266 76 33 chr3 85862382 85862566 -132174592 + L1ME4a LINE L1 5790 5981 -140 2211 94 0 57 chr3 85862602 85862933 -132174225 - AluSx SINE Alu 0 312 1 242 356 58 26 chr3 85863856 85864047 -132173111 - L2 LINE L2 -181 3091 2895 26 0 0 0 chr3 85865145 85865171 -132171987 + AT_rich Low_complexity Low_complexity 1 26 0 324 50 0 0 chr3 85865794 85865834 -132171324 + 5S rRNA rRNA 1 40 -81 2267 93 7 7 chr3 85865839 85866140 -132171018 - AluSx SINE Alu -11 301 1 280 248 238 9 chr3 85867185 85867290 -132169868 - L2 LINE L2 -1 3271 3143 936 268 89 23 chr3 85867313 85867660 -132169498 + L1MEc LINE L1 35 404 -5992 2211 112 7 3 chr3 85867703 85867999 -132169159 + AluSx SINE Alu 1 297 -15 1240 223 75 12 chr3 85868010 85868342 -132168816 + L1MEc LINE L1 490 842 -5554 1940 160 0 10 chr3 85868407 85868719 -132168439 + AluSx SINE Alu 2 310 -2 907 203 70 0 chr3 85868767 85868954 -132168204 + AluJb SINE Alu 85 284 -28 345 47 0 0 chr3 85868954 85868997 -132168161 + (CA)n Simple_repeat Simple_repeat 2 44 0 294 281 52 0 chr3 85869021 85869117 -132168041 + L1ME2 LINE L1 5429 5529 -637 1091 119 6 19 chr3 85870226 85870386 -132166772 + AluSg SINE Alu 1 158 -152 1605 103 9 0 chr3 85870486 85870700 -132166458 + AluSg/x SINE Alu 94 309 -3 406 160 21 53 chr3 85870703 85870797 -132166361 + MLT1C LTR MaLR 377 467 0 3106 82 20 2 chr3 85871280 85871683 -132165475 - L1PA13 LINE L1 -8 6155 5746 867 229 29 0 chr3 85871707 85871877 -132165281 + FAM SINE Alu 1 175 0 2317 116 3 0 chr3 85872289 85872600 -132164558 - AluSp SINE Alu -1 312 1 602 89 11 0 chr3 85873162 85873252 -132163906 + (TGGA)n Simple_repeat Simple_repeat 3 93 0 759 178 75 47 chr3 85873657 85873870 -132163288 + L1ME2 LINE L1 5734 5952 -212 456 250 61 34 chr3 85873876 85874024 -132163134 + L1MA10 LINE L1 6175 6326 -8 2209 136 36 0 chr3 85874184 85874514 -132162644 + MER2 DNA MER2_type 2 343 -1 183 224 207 17 chr3 85875013 85875071 -132162087 + L3 LINE CR1 1395 1463 -114 226 337 39 21 chr3 85875172 85875454 -132161704 + L1M4 LINE L1 4873 5159 -987 2105 114 3 29 chr3 85875460 85875767 -132161391 + AluSx SINE Alu 1 299 -13 297 0 0 0 chr3 85875808 85875841 -132161317 + (TG)n Simple_repeat Simple_repeat 2 34 0 246 62 0 0 chr3 85875840 85875872 -132161286 + (TA)n Simple_repeat Simple_repeat 1 32 0 * 482 205 33 16 chr3 85875921 85876043 -132161115 + L1M LINE L1 5304 5427 -2381 427 295 96 52 chr3 85876144 85876415 -132160743 - L2 LINE L2 -61 3211 2929 564 295 89 69 chr3 85876458 85877078 -132160080 - L2 LINE L2 -467 2847 2216 512 222 93 0 chr3 85877428 85877536 -132159622 - FLAM_A SINE Alu -10 132 15 1149 140 77 0 chr3 85878761 85878982 -132158176 - L1MC3 LINE L1 0 7785 7548 621 165 44 2 chr3 85879291 85879540 -132157618 + AluJo SINE Alu 2 301 -1 384 239 77 8 chr3 85880957 85881074 -132156084 + Charlie7 DNA MER1_type 31 155 -2457 2177 113 23 3 chr3 85881548 85881850 -132155308 + AluSx SINE Alu 1 308 -4 728 109 11 0 chr3 85881910 85882002 -132155156 + AluSq SINE Alu 110 202 -111 846 113 0 45 chr3 85882818 85882951 -132154207 - FLAM_C SINE Alu -16 127 1 625 298 37 100 chr3 85883257 85883858 -132153300 - L2 LINE L2 -1 3271 2713 299 25 25 0 chr3 85884416 85884456 -132152702 + (TTTTC)n Simple_repeat Simple_repeat 4 44 0 1489 149 62 40 chr3 85884459 85884735 -132152423 - AluJo SINE Alu -30 282 1 1586 257 130 34 chr3 85884899 85886317 -132150841 - L1ME3A LINE L1 -219 5951 4403 2211 139 36 0 chr3 85886350 85886681 -132150477 - MER7A DNA MER2_type 0 346 6 2799 276 115 33 chr3 85886685 85887766 -132149392 - L1ME3A LINE L1 -1806 4340 3350 2220 121 0 0 chr3 85887766 85888071 -132149087 - AluSx SINE Alu -7 305 1 2799 276 115 33 chr3 85888071 85888886 -132148272 - L1ME3A LINE L1 -2796 3350 2287 192 77 0 0 chr3 85889394 85889420 -132147738 + (T)n Simple_repeat Simple_repeat 1 26 0 242 257 0 29 chr3 85889605 85889675 -132147483 + CT-rich Low_complexity Low_complexity 1 68 0 228 226 0 0 chr3 85889915 85889968 -132147190 + CT-rich Low_complexity Low_complexity 1 53 0 493 288 133 129 chr3 85890891 85891984 -132145174 - L3 LINE CR1 -73 1504 408 649 234 211 0 chr3 85892545 85892754 -132144404 + MIR SINE MIR 5 257 -5 570 219 0 65 chr3 85892825 85893050 -132144108 - MIR SINE MIR 0 262 6 1193 248 82 10 chr3 85893512 85893815 -132143343 + MER102a DNA MER1_type 2 326 -4 357 391 0 0 chr3 85893863 85893978 -132143180 + L2 LINE L2 3141 3255 -17 709 206 109 6 chr3 85895877 85896042 -132141116 - MER3 DNA MER1_type 0 209 28 557 209 25 117 chr3 85896780 85897019 -132140139 + L2 LINE L2 3020 3236 -77 2162 112 10 0 chr3 85897055 85897349 -132139809 + AluSx SINE Alu 1 297 -15 252 0 0 0 chr3 85897349 85897377 -132139781 + (TA)n Simple_repeat Simple_repeat 2 29 0 682 125 21 0 chr3 85897383 85897479 -132139679 + AluSg/x SINE Alu 201 298 -14 538 204 191 0 chr3 85898124 85898276 -132138882 - MER5A DNA MER1_type -5 184 4 625 178 25 8 chr3 85898563 85898681 -132138477 + FRAM SINE Alu 2 121 -55 203 308 15 0 chr3 85898768 85898833 -132138325 - MIR3 SINE MIR -6 202 137 2039 216 40 5 chr3 85898979 85899427 -132137731 - MLT1C LTR MaLR 0 467 4 225 0 0 0 chr3 85899820 85899845 -132137313 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 369 0 0 0 chr3 85899844 85899885 -132137273 + (TG)n Simple_repeat Simple_repeat 2 42 0 2101 109 32 0 chr3 85899942 85900226 -132136932 + AluSx SINE Alu 1 293 -19 374 342 0 0 chr3 85900750 85900864 -132136294 + (TG)n Simple_repeat Simple_repeat 1 114 0 450 233 45 23 chr3 85901161 85901294 -132135864 + MIR SINE MIR 115 250 -12 1773 191 0 0 chr3 85901436 85901735 -132135423 + AluJo SINE Alu 1 299 -13 26 30 0 0 chr3 85901735 85901768 -132135390 + AT_rich Low_complexity Low_complexity 1 33 0 188 319 0 0 chr3 85902388 85902435 -132134723 + MIR3 SINE MIR 131 177 -31 401 276 32 16 chr3 85903938 85904061 -132133097 - L2 LINE L2 0 3313 3189 2475 76 0 0 chr3 85904837 85905140 -132132018 - AluY SINE Alu -8 303 1 2268 108 7 0 chr3 85905556 85905862 -132131296 - AluSq SINE Alu -5 308 1 1015 111 0 15 chr3 85906514 85906649 -132130509 + FLAM_C SINE Alu 1 133 0 1200 115 46 0 chr3 85908910 85909084 -132128074 + MER30B DNA MER1_type 5 186 -4 210 283 19 0 chr3 85909126 85909179 -132127979 + MIR SINE MIR 60 113 -95 10016 74 14 31 chr3 85909267 85910665 -132126493 - SVA Other Other 0 1386 13 183 129 0 0 chr3 85912116 85912147 -132125011 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2353 98 3 0 chr3 85912352 85912658 -132124500 + AluSg SINE Alu 1 307 -3 2205 112 3 13 chr3 85913068 85913380 -132123778 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr3 85913391 85913412 -132123746 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr3 85913458 85913479 -132123679 + (A)n Simple_repeat Simple_repeat 1 21 0 2233 121 0 9 chr3 85913505 85913820 -132123338 + AluSx SINE Alu 1 312 0 230 300 57 0 chr3 85913868 85913938 -132123220 - L2 LINE L2 -3 3310 3237 24 19 6 0 chr3 85914076 85914140 -132123018 + AT_rich Low_complexity Low_complexity 1 31 0 326 137 0 0 chr3 85915491 85915542 -132121616 + U2 snRNA snRNA 1 51 -137 641 197 39 16 chr3 85915568 85915695 -132121463 + FLAM_C SINE Alu 1 130 -3 862 153 65 18 chr3 85916516 85916851 -132120307 + MSTD LTR MaLR 1 389 -7 434 260 158 0 chr3 85916913 85917059 -132120099 - MIR SINE MIR -89 173 5 201 250 0 71 chr3 85917138 85917194 -132119964 + MIR SINE MIR 209 260 -2 1299 166 127 0 chr3 85920143 85920427 -132116731 - MER58B DNA MER1_type 0 341 22 1790 177 3 26 chr3 85920443 85920754 -132116404 - AluJo SINE Alu -8 304 1 960 72 39 78 chr3 85920840 85921020 -132116138 - L1PA11 LINE L1 -64 6110 5938 478 200 11 0 chr3 85921310 85921400 -132115758 - MER7A DNA MER2_type -257 89 1 219 271 17 0 chr3 85922871 85922930 -132114228 + L2 LINE L2 3002 3061 -211 305 264 28 14 chr3 85923450 85923522 -132113636 + L2 LINE L2 3196 3268 -4 696 191 36 36 chr3 85924330 85924524 -132112634 - L1MC5 LINE L1 -47 7914 7721 722 248 50 41 chr3 85924525 85924767 -132112391 + MIR SINE MIR 19 262 0 2115 134 3 3 chr3 85925794 85926099 -132111059 + AluSx SINE Alu 1 305 -7 583 267 136 0 chr3 85928030 85928236 -132108922 - MARNA DNA Mariner -19 567 334 301 375 34 64 chr3 85928276 85928511 -132108647 + L2 LINE L2 3039 3266 -6 2019 120 20 0 chr3 85929309 85929601 -132107557 + AluSx SINE Alu 3 300 -12 2387 64 13 0 chr3 85929601 85929899 -132107259 + AluY SINE Alu 1 302 -9 186 43 0 0 chr3 85929942 85929965 -132107193 + (T)n Simple_repeat Simple_repeat 1 23 0 335 243 10 58 chr3 85930520 85930623 -132106535 - MER5A DNA MER1_type -83 106 9 183 329 110 0 chr3 85930941 85931023 -132106135 + MIR SINE MIR 79 169 -93 22 56 0 0 chr3 85931061 85931097 -132106061 + AT_rich Low_complexity Low_complexity 1 36 0 327 286 78 16 chr3 85932316 85932508 -132104650 + L1ME4a LINE L1 5862 6065 -56 217 145 32 48 chr3 85933921 85933983 -132103175 + (TTAAA)n Simple_repeat Simple_repeat 4 64 0 384 308 64 23 chr3 85934280 85934554 -132102604 - L1MC4a LINE L1 -314 5807 5617 1364 232 82 82 chr3 85934762 85935275 -132101883 + MLT1E LTR MaLR 81 593 0 309 332 64 27 chr3 85935275 85935462 -132101696 - L1MC4a LINE L1 -2547 5448 5255 900 150 16 72 chr3 85935651 85935844 -132101314 - Tigger2a DNA MER2_type -252 182 1 196 259 56 0 chr3 85938158 85938212 -132098946 - MIR SINE MIR -51 211 155 2418 70 0 0 chr3 85938985 85939285 -132097873 + AluY SINE Alu 1 300 -11 268 294 15 0 chr3 85939425 85939493 -132097665 - L2 LINE L2 -13 3300 3232 268 316 31 31 chr3 85939591 85939787 -132097371 + L1MC4a LINE L1 5709 5904 -1904 21 36 0 0 chr3 85939975 85940003 -132097155 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr3 85940273 85940298 -132096860 + AT_rich Low_complexity Low_complexity 1 25 0 1644 194 3 35 chr3 85940905 85941220 -132095938 - AluJo SINE Alu -7 305 1 342 0 0 0 chr3 85941479 85941517 -132095641 + (CA)n Simple_repeat Simple_repeat 2 39 0 801 267 12 17 chr3 85942004 85942244 -132094914 - MIR SINE MIR -9 253 15 438 301 15 0 chr3 85942569 85942702 -132094456 - L2 LINE L2 -2 3270 3136 192 244 0 0 chr3 85943000 85943041 -132094117 + L2 LINE L2 3230 3270 -2 2476 60 3 22 chr3 85943060 85943374 -132093784 + AluY SINE Alu 1 308 -3 214 279 249 35 chr3 85943658 85943887 -132093271 + L2 LINE L2 2065 2342 -972 661 170 30 37 chr3 85943988 85944123 -132093035 + FRAM SINE Alu 18 151 -25 2217 114 0 0 chr3 85944599 85944896 -132092262 + AluSx SINE Alu 1 297 -15 706 144 0 0 chr3 85945022 85945133 -132092025 - FLAM_C SINE Alu -32 111 1 966 103 0 55 chr3 85945196 85945341 -132091817 + AluY SINE Alu 1 137 -174 371 141 17 2 chr3 85945443 85945512 -132091646 - AluJ/FLAM SINE Alu -240 62 3 1967 159 11 28 chr3 85945519 85945872 -132091286 - MER7A DNA MER2_type -1 345 1 2264 68 4 0 chr3 85946076 85946356 -132090802 - AluY SINE Alu -30 281 1 562 257 65 118 chr3 85946571 85946609 -132090549 - LTR16A1 LTR ERVL -1 456 418 2138 117 0 10 chr3 85946609 85946772 -132090386 - AluSx SINE Alu -16 296 136 2410 81 0 0 chr3 85946772 85947100 -132090058 - AluSq SINE Alu 0 313 1 2138 117 0 10 chr3 85947100 85947235 -132089923 - AluSx SINE Alu -176 136 1 562 257 65 118 chr3 85947235 85947556 -132089602 - LTR16A1 LTR ERVL -39 418 125 773 228 78 15 chr3 85947556 85947762 -132089396 + MER20 DNA MER1_type 1 219 0 562 257 65 118 chr3 85947762 85947876 -132089282 - LTR16A1 LTR ERVL -332 125 7 1298 119 42 4 chr3 85948443 85948717 -132088441 + L1P5 LINE L1 5213 5495 -661 1195 137 0 16 chr3 85948819 85949009 -132088149 + AluSg/x SINE Alu 112 298 -14 390 268 18 0 chr3 85949172 85949284 -132087874 - MIR SINE MIR -1 261 148 550 294 141 37 chr3 85949292 85949618 -132087540 - MLT1K LTR MaLR -9 579 220 254 284 26 86 chr3 85949648 85949764 -132087394 - MLT1K LTR MaLR -433 155 47 485 267 27 20 chr3 85949827 85949973 -132087185 - MIR SINE MIR -114 148 2 316 259 36 43 chr3 85950070 85950209 -132086949 + L1ME4a LINE L1 5873 6010 -111 297 241 146 80 chr3 85950756 85950866 -132086292 + MER91A DNA MER1_type 18 141 -55 2209 92 4 0 chr3 85950866 85951172 -132085986 - AluSp SINE Alu 0 307 1 297 241 146 80 chr3 85951172 85951197 -132085961 + MER91A DNA MER1_type 141 163 -33 332 300 0 0 chr3 85951212 85951292 -132085866 + MIR SINE MIR 3 82 -180 807 170 109 7 chr3 85952398 85952513 -132084645 + AluJo SINE Alu 1 136 -176 230 0 0 32 chr3 85952513 85952544 -132084614 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 807 170 109 7 chr3 85952544 85952575 -132084583 + AluJo SINE Alu 136 162 -150 2229 113 3 0 chr3 85952578 85952878 -132084280 + AluSg SINE Alu 3 303 -7 339 232 63 0 chr3 85952906 85953001 -132084157 + MER113 DNA MER1_type? 349 449 -72 236 136 0 45 chr3 85953240 85953284 -132083874 + L1MB7 LINE L1 5618 5659 -462 414 278 56 0 chr3 85953361 85953487 -132083671 + MER5A DNA MER1_type 57 189 0 378 304 88 15 chr3 85953714 85953918 -132083240 - MLT1K LTR MaLR -45 543 325 26 0 0 0 chr3 85954475 85954501 -132082657 + AT_rich Low_complexity Low_complexity 1 26 0 1568 146 27 112 chr3 85954602 85954932 -132082226 + AluSx SINE Alu 1 302 -10 519 120 0 0 chr3 85955032 85955107 -132082051 + FRAM SINE Alu 69 143 -33 180 0 0 0 chr3 85955114 85955134 -132082024 + (GAA)n Simple_repeat Simple_repeat 2 21 0 2190 126 3 7 chr3 85955342 85955652 -132081506 - AluSx SINE Alu -3 309 1 1896 244 37 13 chr3 85955706 85956251 -132080907 + L1ME3A LINE L1 5461 6018 -152 734 116 8 39 chr3 85956374 85956503 -132080655 + AluSq/x SINE Alu 12 136 -177 1505 96 0 0 chr3 85956550 85956748 -132080410 + AluY SINE Alu 114 311 0 608 224 77 0 chr3 85957048 85957204 -132079954 - MER115 DNA AcHobo -2 691 524 483 270 156 57 chr3 85957306 85957517 -132079641 - MER115 DNA AcHobo -320 373 142 2534 60 63 26 chr3 85957594 85957945 -132079213 + THE1B LTR MaLR 1 364 0 186 222 22 0 chr3 85958125 85958170 -132078988 + L3 LINE CR1 1525 1570 -7 2180 131 0 7 chr3 85958459 85958764 -132078394 + AluSx SINE Alu 1 303 -9 1183 223 87 15 chr3 85959144 85959548 -132077610 + L1MB7 LINE L1 5742 6174 -10 2254 119 3 3 chr3 85959864 85960174 -132076984 + AluSx SINE Alu 1 310 -2 351 183 96 87 chr3 85960175 85960279 -132076879 + MIR3 SINE MIR 68 172 -36 844 217 64 124 chr3 85960588 85961222 -132075936 - MLT1G LTR MaLR 0 590 1 2111 133 0 0 chr3 85961381 85961666 -132075492 + AluSx SINE Alu 1 285 -27 208 0 0 0 chr3 85961666 85961689 -132075469 + (TAAA)n Simple_repeat Simple_repeat 2 88 0 434 302 89 27 chr3 85961698 85961803 -132075355 + MIR SINE MIR 24 121 -141 180 0 0 0 chr3 85961803 85961823 -132075335 + (TGG)n Simple_repeat Simple_repeat 1 20 0 434 302 89 27 chr3 85961823 85961942 -132075216 + MIR SINE MIR 121 262 0 2117 126 7 7 chr3 85962270 85962571 -132074587 + AluSx SINE Alu 1 301 -11 284 343 143 32 chr3 85962573 85963098 -132074060 - L2 LINE L2 -394 2920 2338 327 310 35 42 chr3 85963226 85963368 -132073790 + L2 LINE L2 3173 3313 0 184 347 0 0 chr3 85963908 85963957 -132073201 - L2 LINE L2 -11 3261 3213 27 49 0 0 chr3 85964376 85964417 -132072741 + AT_rich Low_complexity Low_complexity 1 41 0 318 174 198 0 chr3 85965250 85965336 -132071822 + MIR SINE MIR 34 136 -126 236 238 75 12 chr3 85966485 85966565 -132070593 - MIR SINE MIR -6 256 172 1199 165 29 5 chr3 85966791 85966997 -132070161 - MER46A DNA MER2_type 0 236 26 1858 140 4 0 chr3 85967017 85967296 -132069862 + AluJb SINE Alu 1 280 -32 995 47 8 0 chr3 85967302 85967431 -132069727 + (TAGA)n Simple_repeat Simple_repeat 3 132 0 299 215 0 31 chr3 85968006 85968071 -132069087 - MER46A DNA MER2_type -126 110 48 339 199 132 44 chr3 85968100 85968159 -132068999 + MIR SINE MIR 109 161 -101 1185 203 254 34 chr3 85968159 85968572 -132068586 - MLT1D LTR MaLR -1 504 1 339 199 132 44 chr3 85968572 85968648 -132068510 + MIR SINE MIR 161 256 -6 507 269 113 51 chr3 85969091 85969347 -132067811 + L2 LINE L2 2997 3268 -45 347 263 0 93 chr3 85969357 85969475 -132067683 - L2 LINE L2 -2 3311 3205 2471 67 0 0 chr3 85969508 85969805 -132067353 + AluY SINE Alu 1 297 -14 261 202 202 0 chr3 85970718 85970812 -132066346 + L1ME4a LINE L1 6009 6121 0 1010 226 129 7 chr3 85971302 85971589 -132065569 - MER46C DNA MER2_type -16 322 1 2015 112 34 17 chr3 85971797 85972091 -132065067 - AluSg SINE Alu -11 299 1 381 326 18 22 chr3 85972815 85973004 -132064154 - MIR SINE MIR -41 221 35 604 316 36 48 chr3 85973119 85973534 -132063624 - L1ME LINE L1 -357 5813 5404 738 266 55 93 chr3 85973900 85974318 -132062840 + L2 LINE L2 2912 3313 0 507 363 7 39 chr3 85974511 85974795 -132062363 - L2 LINE L2 -516 2798 2524 382 213 148 9 chr3 85976292 85976400 -132060758 + MIR SINE MIR 66 188 -74 1573 169 55 15 chr3 85976400 85976672 -132060486 - AluJb SINE Alu -29 283 1 2121 132 0 3 chr3 85976705 85977016 -132060142 - AluSx SINE Alu -2 310 1 452 285 16 57 chr3 85977082 85977328 -132059830 - L1ME4a LINE L1 -157 5964 5729 305 165 37 119 chr3 85977827 85977936 -132059222 - MIR SINE MIR -70 192 93 456 313 0 0 chr3 85978006 85978121 -132059037 + MIR SINE MIR 32 146 -62 264 326 103 9 chr3 85978317 85978541 -132058617 - MLT1I LTR MaLR -158 251 7 2199 108 7 0 chr3 85978656 85978944 -132058214 + AluSx SINE Alu 1 290 -22 1529 219 153 32 chr3 85979007 85979411 -132057747 + MLT1F LTR MaLR 15 369 -173 1246 171 36 108 chr3 85979411 85979603 -132057555 - AluJo SINE Alu -2 310 106 300 53 0 0 chr3 85979603 85979641 -132057517 + (TG)n Simple_repeat Simple_repeat 2 39 0 189 0 0 0 chr3 85979640 85979661 -132057497 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 1246 171 36 108 chr3 85979641 85979661 -132057497 - AluJo SINE Alu -206 106 86 2016 146 3 0 chr3 85979661 85979955 -132057203 - AluSx SINE Alu -16 296 2 1246 171 36 108 chr3 85979955 85980095 -132057063 - AluJo SINE Alu -226 86 1 1529 219 153 32 chr3 85980095 85980161 -132056997 + MLT1F LTR MaLR 369 542 0 240 86 0 138 chr3 85980162 85980220 -132056938 - L1MC4 LINE L1 -1339 6703 6654 1166 173 100 16 chr3 85980309 85980558 -132056600 + MLT1G LTR MaLR 321 590 0 1729 39 5 0 chr3 85980672 85980876 -132056282 - AluY SINE Alu 0 311 107 2253 132 0 0 chr3 85981000 85981310 -132055848 - AluJb SINE Alu -2 310 1 2596 236 49 34 chr3 85981316 85981633 -132055525 + L1M4 LINE L1 2557 2868 -3278 2395 77 3 6 chr3 85981633 85981945 -132055213 - AluY SINE Alu 0 311 1 2596 236 49 34 chr3 85981945 85982462 -132054696 + L1M4 LINE L1 2868 3404 -2742 521 204 49 28 chr3 85982467 85982487 -132054671 - L1M4 LINE L1 -933 5213 5195 2044 101 56 17 chr3 85982487 85982774 -132054384 - AluSq SINE Alu -15 298 1 521 204 49 28 chr3 85982774 85982895 -132054263 - L1M4 LINE L1 -951 5195 5069 424 333 32 0 chr3 85982895 85983018 -132054140 - MLT1K LTR MaLR -365 223 97 916 259 19 12 chr3 85983274 85983533 -132053625 + MIR SINE MIR 1 261 -1 1602 170 28 11 chr3 85984043 85984325 -132052833 + AluJb SINE Alu 1 287 -25 1969 160 0 13 chr3 85984489 85984802 -132052356 - AluJo SINE Alu -3 309 1 3510 265 108 31 chr3 85984867 85986400 -132050758 + HAL1 LINE L1 196 1846 -661 2397 97 0 3 chr3 85986427 85986738 -132050420 + AluY SINE Alu 2 311 0 854 228 151 62 chr3 85986771 85986789 -132050369 + HAL1 LINE L1 2000 2015 -492 1964 133 43 13 chr3 85986789 85987090 -132050068 + AluSg SINE Alu 1 310 0 854 228 151 62 chr3 85987090 85987474 -132049684 + HAL1 LINE L1 2015 2438 -69 567 279 72 10 chr3 85987575 85987783 -132049375 - MER112 DNA MER1_type -32 228 8 277 329 110 7 chr3 85987891 85988037 -132049121 - MIR SINE MIR -55 207 47 215 304 61 43 chr3 85988271 85988386 -132048772 + L2 LINE L2 3107 3223 -90 813 139 21 49 chr3 85988394 85988538 -132048620 + FLAM_C SINE Alu 2 141 -2 314 204 11 0 chr3 85988616 85988704 -132048454 + (TGGA)n Simple_repeat Simple_repeat 3 91 0 1464 161 0 25 chr3 85988914 85989150 -132048008 - AluJb SINE Alu -82 230 1 1025 191 0 6 chr3 85989160 85989343 -132047815 + AluJb SINE Alu 123 304 -8 398 309 103 0 chr3 85989393 85989568 -132047590 - L2 LINE L2 -3 3310 3118 1729 179 10 0 chr3 85989841 85990142 -132047016 - AluJo SINE Alu -8 304 1 209 200 0 0 chr3 85990805 85990845 -132046313 + (CA)n Simple_repeat Simple_repeat 1 40 0 4306 206 61 62 chr3 85990976 85992223 -132044935 + L1MC4a LINE L1 6563 7808 0 2105 120 7 3 chr3 85992530 85992839 -132044319 - AluJb SINE Alu -2 310 1 526 163 10 0 chr3 85992850 85992948 -132044210 - L1MB4 LINE L1 0 6180 6082 966 133 0 0 chr3 85993018 85993146 -132044012 - FLAM_C SINE Alu -4 129 2 1099 158 0 0 chr3 85993251 85993416 -132043742 - AluJo/FRAM SINE Alu -12 300 136 2122 103 45 0 chr3 85993417 85993707 -132043451 - AluSx SINE Alu -9 303 1 1717 75 0 42 chr3 85994242 85994481 -132042677 + AluY SINE Alu 83 311 0 493 125 50 0 chr3 85994617 85994697 -132042461 - AluSg1 SINE Alu -225 84 1 1539 97 48 0 chr3 85994701 85994907 -132042251 + AluSq SINE Alu 91 306 -7 1911 146 26 16 chr3 85994923 85995231 -132041927 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr3 85995850 85995871 -132041287 + AT_rich Low_complexity Low_complexity 1 21 0 927 212 165 35 chr3 85995913 85996291 -132040867 + L1ME2 LINE L1 5655 6092 -72 2203 147 27 15 chr3 85996291 85996624 -132040534 - MER1B DNA MER1_type 0 337 1 927 212 165 35 chr3 85996624 85996660 -132040498 + L1ME2 LINE L1 6092 6122 -42 832 181 0 0 chr3 85997088 85997215 -132039943 + FLAM_C SINE Alu 1 127 -16 33 43 0 0 chr3 85997215 85997262 -132039896 + AT_rich Low_complexity Low_complexity 1 47 0 2287 80 0 13 chr3 85997435 85997735 -132039423 + AluSc SINE Alu 1 296 -13 2003 144 52 23 chr3 85999350 85999697 -132037461 + MER46B DNA MER2_type 1 232 -4 2084 133 3 7 chr3 85999843 86000151 -132037007 + AluSx SINE Alu 1 307 -5 297 329 54 54 chr3 86000153 86000393 -132036765 + L2 LINE L2 2630 2869 -445 615 275 70 37 chr3 86000539 86000783 -132036375 + MIR SINE MIR 11 262 0 2022 137 7 10 chr3 86000937 86001237 -132035921 - AluSx SINE Alu -11 301 3 363 242 53 11 chr3 86001274 86001369 -132035789 + MLT1H1 LTR MaLR 35 133 -422 494 276 181 0 chr3 86001555 86001776 -132035382 + L2 LINE L2 2995 3255 -58 276 281 21 42 chr3 86002050 86002146 -132035012 + MIR SINE MIR 132 225 -37 581 294 54 23 chr3 86003302 86003523 -132033635 + MIR SINE MIR 18 245 -17 205 304 14 0 chr3 86003605 86003674 -132033484 + CT-rich Low_complexity Low_complexity 2 71 0 449 281 226 5 chr3 86004284 86004483 -132032675 - MIR SINE MIR -8 254 12 2371 90 3 0 chr3 86004696 86004996 -132032162 + AluSq SINE Alu 1 301 -12 23 0 0 0 chr3 86005042 86005065 -132032093 + AT_rich Low_complexity Low_complexity 1 23 0 1134 145 11 21 chr3 86006415 86006601 -132030557 + AluSx SINE Alu 1 184 -128 2078 136 0 0 chr3 86006703 86006990 -132030168 - AluSx SINE Alu -25 287 1 3950 139 5 16 chr3 86006991 86007617 -132029541 - L1MC2 LINE L1 -369 5975 5357 1885 136 13 23 chr3 86007619 86007920 -132029238 - AluSx SINE Alu -14 298 1 371 301 77 22 chr3 86007961 86008144 -132029014 + L1ME4a LINE L1 5633 5825 -296 1470 213 66 12 chr3 86008153 86008472 -132028686 + MER58B DNA MER1_type 3 338 -3 1427 153 0 5 chr3 86008689 86008904 -132028254 - AluJb SINE Alu -14 298 85 663 160 9 0 chr3 86009259 86009365 -132027793 + AluJb SINE Alu 203 309 -3 1818 118 62 7 chr3 86009641 86009930 -132027228 + AluSg SINE Alu 1 305 -5 800 186 0 0 chr3 86009975 86010093 -132027065 + FLAM_C SINE Alu 1 118 -15 736 258 50 86 chr3 86010151 86010453 -132026705 - MLT1I LTR MaLR -73 336 46 311 306 169 20 chr3 86010553 86010617 -132026541 - L3 LINE CR1 -86 1491 1438 2219 79 20 10 chr3 86010617 86010909 -132026249 - AluSx SINE Alu -17 295 1 311 306 169 20 chr3 86010909 86011099 -132026059 - L3 LINE CR1 -139 1438 1199 1913 154 7 0 chr3 86011307 86011592 -132025566 - AluSx SINE Alu -25 287 1 2915 10 0 0 chr3 86011597 86011913 -132025245 - AluYb8 SINE Alu -8 310 1 187 43 0 0 chr3 86012051 86012074 -132025084 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 1865 156 7 0 chr3 86012074 86012349 -132024809 - AluJb SINE Alu -30 282 6 1104 293 42 65 chr3 86012355 86012609 -132024549 - L1MEd LINE L1 -4883 1236 978 2378 84 3 0 chr3 86012609 86012905 -132024253 - AluSg SINE Alu -13 297 1 1104 293 42 65 chr3 86012905 86013259 -132023899 - L1MEd LINE L1 -5141 978 645 1445 209 94 47 chr3 86013259 86013705 -132023453 - MLT1C LTR MaLR 0 467 1 1104 293 42 65 chr3 86013705 86013815 -132023343 - L1MEd LINE L1 -5474 645 534 2034 154 0 3 chr3 86013845 86014150 -132023008 - AluJo SINE Alu -8 304 1 2351 95 0 0 chr3 86014309 86014604 -132022554 - AluSx SINE Alu -13 299 5 286 305 11 11 chr3 86014752 86014847 -132022311 - L1MEd LINE L1 -5937 182 88 443 302 138 38 chr3 86014854 86015360 -132021798 + L1ME LINE L1 4475 5031 -1115 1396 244 12 37 chr3 86015398 86015481 -132021677 + L1ME LINE L1 5280 5364 -798 2146 124 0 13 chr3 86015481 86015788 -132021370 + AluSx SINE Alu 1 303 -9 1396 244 12 37 chr3 86015788 86016110 -132021048 + L1ME LINE L1 5364 5675 -487 196 232 74 105 chr3 86016215 86016310 -132020848 + MER5A DNA MER1_type 10 101 -88 245 290 0 0 chr3 86016374 86016436 -132020722 + MLT1L LTR MaLR 554 615 0 411 21 0 0 chr3 86016526 86016574 -132020584 + (CA)n Simple_repeat Simple_repeat 2 49 0 1863 89 43 4 chr3 86016607 86016865 -132020293 + AluSc SINE Alu 40 307 -2 1651 181 3 28 chr3 86016900 86017220 -132019938 + AluJb SINE Alu 1 312 0 1453 172 35 21 chr3 86017391 86017676 -132019482 + L1MC2 LINE L1 6007 6295 -49 2157 128 0 0 chr3 86017717 86018029 -132019129 - AluSx SINE Alu 0 312 1 762 164 7 27 chr3 86018029 86018164 -132018994 - FLAM_C SINE Alu -178 134 1 26 30 0 0 chr3 86018205 86018238 -132018920 + AT_rich Low_complexity Low_complexity 1 33 0 372 237 71 65 chr3 86018244 86018413 -132018745 - L1ME4a LINE L1 -17 6104 5935 2237 86 3 23 chr3 86018413 86018715 -132018443 - AluSx SINE Alu -16 296 1 24 32 0 0 chr3 86018770 86018801 -132018357 + AT_rich Low_complexity Low_complexity 1 31 0 261 233 29 58 chr3 86018993 86019004 -132018154 - L1ME4a LINE L1 -296 5825 5815 231 36 0 0 chr3 86019013 86019041 -132018117 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 1839 144 20 7 chr3 86019041 86019323 -132017835 - AluSx SINE Alu -23 289 1 261 233 29 58 chr3 86019323 86019414 -132017744 - L1ME4a LINE L1 -306 5815 5726 199 162 27 0 chr3 86020240 86020277 -132016881 + L2 LINE L2 3219 3256 -16 1957 152 3 13 chr3 86020432 86020567 -132016591 + AluJb SINE Alu 1 136 -176 2236 116 0 0 chr3 86020567 86020860 -132016298 + AluSq SINE Alu 1 293 -20 1957 152 3 13 chr3 86020860 86021033 -132016125 + AluJb SINE Alu 136 306 -6 23 33 0 0 chr3 86021033 86021063 -132016095 + AT_rich Low_complexity Low_complexity 1 30 0 484 301 76 64 chr3 86021153 86021399 -132015759 - L2 LINE L2 0 3272 3030 840 159 0 0 chr3 86021399 86021525 -132015633 - FLAM_C SINE Alu -7 126 1 484 301 76 64 chr3 86021525 86021781 -132015377 - L2 LINE L2 -242 3030 2775 1720 161 3 41 chr3 86021781 86022098 -132015060 - AluJo SINE Alu -7 305 1 484 301 76 64 chr3 86022098 86022192 -132014966 - L2 LINE L2 -497 2775 2684 203 272 54 82 chr3 86022366 86022388 -132014770 - L2 LINE L2 -865 2449 2428 434 143 13 0 chr3 86022388 86022465 -132014693 + MER116 DNA Mariner 3 80 0 203 272 54 82 chr3 86022465 86022589 -132014569 - L2 LINE L2 -886 2428 2307 2431 103 3 0 chr3 86022739 86023050 -132014108 - AluSx SINE Alu 0 312 1 2001 135 0 3 chr3 86024551 86024833 -132012325 - AluJb SINE Alu -31 281 1 681 204 48 42 chr3 86025466 86025633 -132011525 - MLT1K LTR MaLR -2 586 419 1933 239 22 14 chr3 86025746 86026161 -132010997 + L1M4b LINE L1 -564 4294967149 -6431 1036 185 36 5 chr3 86026169 86026364 -132010794 + L1M4b LINE L1 250 450 -5834 471 253 2 30 chr3 86027308 86027479 -132009679 + L1M4b LINE L1 2259 2416 -3968 2187 123 3 0 chr3 86027479 86027780 -132009378 + AluSq SINE Alu 1 302 -11 471 253 2 30 chr3 86027780 86027838 -132009320 + L1M4b LINE L1 2416 2474 -3910 2315 58 41 7 chr3 86027840 86028132 -132009026 + AluYb8 SINE Alu 15 316 -2 227 256 0 0 chr3 86028137 86028180 -132008978 + AluJ/monomer SINE Alu 1 43 -259 1462 180 4 16 chr3 86028280 86028535 -132008623 - AluJo SINE Alu -37 275 24 259 246 0 16 chr3 86028535 86028596 -132008562 - AluJ/FLAM SINE Alu -242 60 1 257 213 0 0 chr3 86028596 86028643 -132008515 - L1MCa LINE L1 -4249 2177 2131 2495 138 32 19 chr3 86030169 86030825 -132006333 - L1MCa LINE L1 -4285 2141 1341 2368 169 47 29 chr3 86030825 86031202 -132005956 + MSTB2 LTR MaLR 1 389 -68 1723 151 65 0 chr3 86031202 86031480 -132005678 + AluSx SINE Alu 1 296 -16 2368 169 47 29 chr3 86031480 86031551 -132005607 + MSTB2 LTR MaLR 389 457 0 2495 138 32 19 chr3 86031551 86031705 -132005453 - L1MCa LINE L1 -5085 1341 1191 1467 130 25 25 chr3 86031707 86031895 -132005263 + MSTB1 LTR MaLR 194 384 -48 2227 121 0 3 chr3 86031895 86032202 -132004956 + AluSx SINE Alu 1 306 -6 1467 130 25 25 chr3 86032202 86032252 -132004906 + MSTB1 LTR MaLR 383 432 0 305 109 0 0 chr3 86032253 86032299 -132004859 - L1MCa LINE L1 -5470 956 911 5735 74 30 18 chr3 86032299 86032968 -132004190 + L1PB1 LINE L1 5344 6026 -125 2473 76 0 0 chr3 86032968 86033271 -132003887 + AluY SINE Alu 1 303 -8 5735 74 30 18 chr3 86033271 86033399 -132003759 + L1PB1 LINE L1 6026 6151 0 4042 167 73 19 chr3 86033434 86034243 -132002915 - L1MCa LINE L1 -5499 927 75 419 259 136 0 chr3 86034288 86034435 -132002723 + MIR SINE MIR 92 258 -4 186 143 48 0 chr3 86034479 86034542 -132002616 + (TA)n Simple_repeat Simple_repeat 2 67 0 469 331 36 0 chr3 86034681 86034847 -132002311 - MIR SINE MIR -72 190 19 326 304 60 16 chr3 86034903 86035087 -132002071 + L1M4 LINE L1 4840 5031 -1115 896 182 94 6 chr3 86035099 86035280 -132001878 - MER3 DNA MER1_type 0 209 13 751 186 14 7 chr3 86035281 86035421 -132001737 - FLAM_C SINE Alu -1 142 2 239 293 43 0 chr3 86035438 86035554 -132001604 + L1M4 LINE L1 5042 5162 -984 1103 226 20 28 chr3 86035554 86035802 -132001356 + MLT1E LTR MaLR 348 593 0 572 152 11 0 chr3 86036130 86036222 -132000936 + THE1A LTR MaLR 196 288 -67 2217 92 30 0 chr3 86038584 86038879 -131998279 + AluSx SINE Alu 1 304 -8 601 329 5 5 chr3 86039214 86039421 -131997737 - MIR SINE MIR -10 252 46 207 100 0 0 chr3 86039868 86039898 -131997260 + (CGAA)n Simple_repeat Simple_repeat 3 32 0 201 175 25 0 chr3 86040014 86040054 -131997104 + CT-rich Low_complexity Low_complexity 1 41 0 * 214 227 29 47 chr3 86040040 86040212 -131996946 + (CCG)n Simple_repeat Simple_repeat 3 171 0 * 297 228 41 29 chr3 86040190 86040361 -131996797 + (CCGCG)n Simple_repeat Simple_repeat 5 177 0 39 88 0 0 chr3 86040364 86040466 -131996692 + GC_rich Low_complexity Low_complexity 1 102 0 1822 107 35 60 chr3 86041878 86042195 -131994963 - AluSx SINE Alu -3 309 1 1000 161 33 6 chr3 86042212 86042392 -131994766 + MER5A DNA MER1_type 1 185 -4 393 264 65 7 chr3 86042394 86042549 -131994609 - MIR SINE MIR -91 171 8 374 250 0 0 chr3 86044089 86044177 -131992981 + MIR3 SINE MIR 119 206 -2 887 287 133 26 chr3 86044978 86045762 -131991396 + L2 LINE L2 2461 3313 0 234 130 43 22 chr3 86045962 86046008 -131991150 - Alu SINE Alu -9 293 247 235 268 73 12 chr3 86046065 86046147 -131991011 + MLT1K LTR MaLR 159 245 -343 2227 138 13 162 chr3 86046632 86047169 -131989989 + LTR32 LTR ERVL 15 471 0 227 196 0 20 chr3 86047340 86047391 -131989767 + (GGGTG)n Simple_repeat Simple_repeat 5 54 0 330 170 32 32 chr3 86047452 86047546 -131989612 + MLT1K LTR MaLR 492 585 -3 24 0 0 0 chr3 86098592 86098616 -131938542 + AT_rich Low_complexity Low_complexity 1 24 0 1941 113 69 0 chr3 86099624 86099899 -131937259 + AluSx SINE Alu 1 294 -18 1037 136 18 24 chr3 86100074 86100243 -131936915 + AluJb SINE Alu 135 302 -10 455 263 106 12 chr3 86101326 86101486 -131935672 - MIR SINE MIR -17 245 71 21 36 0 0 chr3 86101534 86101562 -131935596 + AT_rich Low_complexity Low_complexity 1 28 0 299 251 47 125 chr3 86101564 86101736 -131935422 - HAL1 LINE L1 0 2507 2323 2302 96 0 17 chr3 86101736 86102037 -131935121 - AluSc SINE Alu -13 296 1 299 251 47 125 chr3 86102037 86102287 -131934871 - HAL1 LINE L1 -184 2323 2118 2386 101 0 0 chr3 86102519 86102826 -131934332 + AluSx SINE Alu 1 307 -5 716 170 63 121 chr3 86102884 86103107 -131934051 + AluJo SINE Alu 86 295 -17 967 162 7 0 chr3 86103120 86103274 -131933884 + AluJb SINE Alu 142 296 -16 819 316 122 12 chr3 86103444 86103928 -131933230 - L2 LINE L2 -338 2976 2440 2201 98 9 44 chr3 86104785 86105103 -131932055 + AluSx SINE Alu 1 307 -5 304 263 134 45 chr3 86105330 86105509 -131931649 - MIR SINE MIR -1 261 67 838 142 52 0 chr3 86106098 86106232 -131930926 + AluSg SINE Alu 14 154 -156 739 208 0 0 chr3 86106335 86106465 -131930693 - FLAM_C SINE Alu -3 130 1 645 246 8 0 chr3 86106466 86106596 -131930562 + MER58B DNA MER1_type 211 341 0 198 0 0 0 chr3 86106738 86106760 -131930398 + (A)n Simple_repeat Simple_repeat 1 22 0 775 191 180 97 chr3 86106768 86106902 -131930256 + AluJo SINE Alu 1 122 -180 1980 159 0 0 chr3 86106902 86107191 -131929967 + AluSx SINE Alu 1 289 -23 775 191 180 97 chr3 86107191 86107334 -131929824 + AluJo SINE Alu 122 301 -1 2302 90 3 10 chr3 86107413 86107712 -131929446 + AluSp SINE Alu 1 297 -16 538 339 25 0 chr3 86108252 86108488 -131928670 + MIR SINE MIR 6 247 -15 2258 111 0 0 chr3 86108502 86108800 -131928358 + AluSx SINE Alu 1 298 -14 734 163 0 0 chr3 86108940 86109063 -131928095 - AluSq/x SINE Alu -187 125 3 199 316 184 7 chr3 86109112 86109264 -131927894 + MIR3 SINE MIR 26 204 -4 401 350 126 0 chr3 86109306 86109520 -131927638 - MIR SINE MIR -18 244 4 2231 91 10 0 chr3 86109629 86109926 -131927232 - AluSx SINE Alu -12 300 1 618 107 27 36 chr3 86109960 86110072 -131927086 - FLAM_C SINE Alu -31 112 2 411 258 60 20 chr3 86110116 86110267 -131926891 - MIR SINE MIR -72 190 34 234 62 0 0 chr3 86110307 86110339 -131926819 + (CTGGGG)n Simple_repeat Simple_repeat 5 36 0 290 269 92 64 chr3 86111110 86111251 -131925907 + L2 LINE L2 2911 3055 -217 28 61 0 0 chr3 86111314 86111363 -131925795 + AT_rich Low_complexity Low_complexity 1 49 0 2218 113 3 13 chr3 86111509 86111644 -131925514 + AluSq SINE Alu 1 136 -177 2286 104 0 3 chr3 86111644 86111941 -131925217 + AluY SINE Alu 1 296 -15 2218 113 3 13 chr3 86111941 86112107 -131925051 + AluSq SINE Alu 136 299 -14 278 139 0 0 chr3 86112272 86112315 -131924843 + Alu SINE Alu 2 44 -257 1334 133 6 0 chr3 86112315 86112518 -131924640 + AluSg/x SINE Alu 102 305 0 363 137 7 0 chr3 86112539 86112607 -131924551 + Alu SINE Alu 245 301 -1 1715 173 13 13 chr3 86112632 86112939 -131924219 + AluJb SINE Alu 1 307 -5 255 287 147 28 chr3 86113120 86113263 -131923895 - MLT1K LTR MaLR -4 584 425 376 214 0 12 chr3 86114082 86114166 -131922992 - MIR3 SINE MIR -25 183 101 454 267 119 20 chr3 86114196 86114398 -131922760 - MIR SINE MIR -1 261 40 266 296 118 15 chr3 86114550 86114685 -131922473 - MIR SINE MIR -71 191 43 2200 117 0 3 chr3 86115410 86115708 -131921450 + AluSx SINE Alu 5 301 -11 348 100 20 0 chr3 86115720 86115770 -131921388 - Alu SINE Alu -252 51 1 2717 241 179 36 chr3 86115778 86115895 -131921263 - L2 LINE L2 -239 3074 2975 1943 89 60 21 chr3 86115895 86116176 -131920982 - AluSc SINE Alu -17 292 1 2717 241 179 36 chr3 86116176 86116379 -131920779 - L2 LINE L2 -338 2975 2802 1799 150 31 3 chr3 86116379 86116673 -131920485 - AluJo SINE Alu -10 302 1 2717 241 179 36 chr3 86116673 86117649 -131919509 - L2 LINE L2 -511 2802 1601 277 314 100 54 chr3 86117767 86118047 -131919111 - L2 LINE L2 -15 3298 3006 1864 184 0 0 chr3 86118396 86118695 -131918463 + AluJo SINE Alu 1 299 -13 2022 187 19 25 chr3 86118807 86119170 -131917988 - MLT1A1 LTR MaLR 0 365 5 1262 201 82 7 chr3 86119213 86119382 -131917776 - AluJo SINE Alu -12 300 100 273 98 0 0 chr3 86119382 86119423 -131917735 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1262 201 82 7 chr3 86119423 86119532 -131917626 - AluJo SINE Alu -212 100 1 2151 122 0 7 chr3 86119908 86120211 -131916947 + AluSq SINE Alu 1 301 -12 583 274 34 11 chr3 86120293 86120468 -131916690 + L1M4 LINE L1 2392 2570 -3576 1527 191 12 32 chr3 86120596 86120942 -131916216 + L1M4 LINE L1 2586 2924 -3222 2329 94 0 0 chr3 86120947 86121244 -131915914 + AluSc SINE Alu 1 297 -12 1878 126 0 11 chr3 86121427 86121704 -131915454 - AluSc SINE Alu -35 274 1 655 290 73 57 chr3 86121807 86121946 -131915212 - MIR SINE MIR -10 252 106 1742 151 10 27 chr3 86121946 86122084 -131915074 + AluJo SINE Alu 1 140 -172 2272 116 0 0 chr3 86122084 86122387 -131914771 + AluSx SINE Alu 1 303 -9 1742 151 10 27 chr3 86122387 86122546 -131914612 + AluJo SINE Alu 140 293 -19 655 290 73 57 chr3 86122546 86122654 -131914504 - MIR SINE MIR -156 106 1 351 271 42 0 chr3 86123340 86123436 -131913722 - MIR SINE MIR -6 256 157 207 0 0 0 chr3 86123702 86123725 -131913433 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1170 124 0 23 chr3 86123734 86123911 -131913247 - AluSg/x SINE Alu -3 309 137 1826 136 0 0 chr3 86123911 86124169 -131912989 - AluSx SINE Alu -15 297 40 1899 176 22 16 chr3 86124439 86124803 -131912355 - MLT1A2 LTR MaLR -5 369 4 280 303 10 20 chr3 86125164 86125263 -131911895 - MER5A DNA MER1_type -91 98 1 24 53 0 0 chr3 86125383 86125421 -131911737 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr3 86125706 86125736 -131911422 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr3 86127273 86127295 -131909863 + AT_rich Low_complexity Low_complexity 1 22 0 1152 183 216 17 chr3 86127530 86127771 -131909387 + AluJb SINE Alu 3 291 -11 1113 169 61 70 chr3 86128289 86128601 -131908557 - L1MC5 LINE L1 -941 7054 6692 1926 113 3 57 chr3 86128701 86129002 -131908156 + AluJb SINE Alu 1 285 -27 251 143 0 129 chr3 86129042 86129055 -131908103 - L1MB3 LINE L1 -36 6147 6134 2031 118 37 0 chr3 86129055 86129352 -131907806 - AluSc SINE Alu -1 308 1 251 143 0 129 chr3 86129352 86129408 -131907750 - L1MB3 LINE L1 -49 6134 6087 * 1221 149 109 43 chr3 86129404 86129680 -131907478 - L1MA4 LINE L1 -282 6018 5725 1372 183 55 29 chr3 86129691 86129965 -131907193 - AluJo SINE Alu -25 287 7 390 116 81 47 chr3 86129968 86130054 -131907104 - L1MA4 LINE L1 -560 5740 5652 2461 83 0 6 chr3 86130055 86130367 -131906791 - AluSg SINE Alu 0 310 1 1915 130 7 13 chr3 86130638 86130939 -131906219 - AluSx SINE Alu -13 299 1 2210 114 0 3 chr3 86131118 86131425 -131905733 - AluSx SINE Alu -6 306 1 1018 125 0 0 chr3 86131425 86131561 -131905597 - AluSq/x SINE Alu -177 136 1 972 110 18 37 chr3 86131602 86131765 -131905393 - BC200 scRNA scRNA -39 161 2 1269 192 75 39 chr3 86131890 86132171 -131904987 - AluSx SINE Alu -21 291 1 611 110 14 14 chr3 86132270 86132415 -131904743 + (TG)n Simple_repeat Simple_repeat 1 145 0 1514 132 136 0 chr3 86132415 86132666 -131904492 - AluY SINE Alu -26 285 1 26 0 0 0 chr3 86132819 86132845 -131904313 + AT_rich Low_complexity Low_complexity 1 26 0 2037 125 0 3 chr3 86133019 86133315 -131903843 + AluSx SINE Alu 1 295 -17 1510 171 92 40 chr3 86133867 86134119 -131903039 + MER2 DNA MER2_type 1 275 -69 2115 122 0 7 chr3 86134119 86134422 -131902736 - AluY SINE Alu -10 301 1 1510 171 92 40 chr3 86134422 86134496 -131902662 + MER2 DNA MER2_type 275 344 0 21 0 0 0 chr3 86134724 86134745 -131902413 + AT_rich Low_complexity Low_complexity 1 21 0 2131 125 7 7 chr3 86135456 86135761 -131901397 - AluSx SINE Alu -5 307 3 381 293 160 69 chr3 86135779 86136105 -131901053 - L1MC4a LINE L1 -1963 5845 5473 1812 149 7 39 chr3 86136105 86136414 -131900744 - AluJo SINE Alu -7 305 7 381 293 160 69 chr3 86136414 86136493 -131900665 - L1MC4a LINE L1 -2335 5473 5403 304 245 0 21 chr3 86136597 86136691 -131900467 - L1MC5 LINE L1 -752 7209 7118 702 215 0 15 chr3 86136691 86136826 -131900332 - FLAM_C SINE Alu 0 133 1 1971 130 18 0 chr3 86137013 86137297 -131899861 - AluSx SINE Alu -23 289 1 1964 115 38 0 chr3 86137304 86137462 -131899696 - AluSx SINE Alu -13 299 124 2231 104 0 3 chr3 86137462 86137760 -131899398 - AluY SINE Alu -14 297 1 1964 115 38 0 chr3 86137760 86137889 -131899269 - AluSx SINE Alu -188 124 1 22 56 0 0 chr3 86137919 86137955 -131899203 + AT_rich Low_complexity Low_complexity 1 36 0 882 194 51 6 chr3 86138131 86138306 -131898852 + MER20 DNA MER1_type 33 215 -4 243 152 0 0 chr3 86138557 86138603 -131898555 - Alu SINE Alu 0 308 263 1712 152 7 28 chr3 86138632 86138922 -131898236 - AluSx SINE Alu -3 309 26 622 186 17 17 chr3 86138923 86139041 -131898117 - AluJo/FLAM SINE Alu -184 118 1 1547 106 0 5 chr3 86139556 86139764 -131897394 - AluSg/x SINE Alu -19 293 87 1042 236 96 14 chr3 86139996 86140216 -131896942 - MER8 DNA MER2_type 0 239 2 617 0 14 0 chr3 86140230 86140303 -131896855 + (TTATG)n Simple_repeat Simple_repeat 3 76 0 682 195 0 0 chr3 86140309 86140422 -131896736 - AluJb SINE Alu -30 282 170 1028 194 43 11 chr3 86140863 86141162 -131895996 + Tigger3(Golem) DNA MER2_type 6 3029 0 2237 118 0 0 chr3 86141207 86141511 -131895647 - AluSx SINE Alu -8 304 1 559 191 85 21 chr3 86141883 86142024 -131895134 - MLT1A1 LTR MaLR 0 365 216 630 180 72 0 chr3 86142029 86142140 -131895018 - FRAM SINE Alu -8 168 50 1683 182 3 13 chr3 86142430 86142732 -131894426 - AluJb SINE Alu -13 299 1 364 267 47 0 chr3 86142911 86142997 -131894161 - L2 LINE L2 -10 3262 3173 297 0 0 0 chr3 86143045 86143078 -131894080 + (TG)n Simple_repeat Simple_repeat 2 34 0 1888 165 7 0 chr3 86143097 86143394 -131893764 - AluSx SINE Alu -13 299 1 253 250 69 56 chr3 86143884 86144028 -131893130 + MER104 DNA Tc2 29 174 -6 2191 105 13 19 chr3 86144368 86144683 -131892475 - AluSp SINE Alu 0 313 1 21 36 0 0 chr3 86145242 86145270 -131891888 + AT_rich Low_complexity Low_complexity 1 28 0 280 319 0 0 chr3 86145821 86145893 -131891265 + CT-rich Low_complexity Low_complexity 4 75 0 196 350 148 40 chr3 86146817 86147120 -131890038 - L2 LINE L2 -418 2896 2561 234 308 169 23 chr3 86147174 86147346 -131889812 + L2 LINE L2 2591 2787 -527 180 256 23 0 chr3 86147463 86147506 -131889652 + L2 LINE L2 2923 2966 -348 1317 94 52 52 chr3 86147807 86148020 -131889138 - MER30 DNA MER1_type -17 213 1 767 248 48 24 chr3 86148053 86148263 -131888895 + MIR SINE MIR 14 228 -34 2029 103 10 7 chr3 86148331 86148622 -131888536 - AluSc SINE Alu -17 292 1 276 189 0 0 chr3 86148763 86148816 -131888342 - L2 LINE L2 0 3313 3261 2162 91 20 20 chr3 86149002 86149299 -131887859 - AluSc SINE Alu -12 297 1 441 0 0 0 chr3 86149299 86149348 -131887810 + (TG)n Simple_repeat Simple_repeat 2 50 0 30 0 0 0 chr3 86149353 86149383 -131887775 + AT_rich Low_complexity Low_complexity 1 30 0 558 88 0 0 chr3 86149483 86149592 -131887566 + AluSg/x SINE Alu 215 323 0 235 364 15 0 chr3 86150566 86150698 -131886460 + L1MC/D LINE L1 5640 5773 -2035 1835 150 4 0 chr3 86150709 86150976 -131886182 + AluSx SINE Alu 1 268 -44 842 167 69 0 chr3 86151010 86151178 -131885980 + FRAM SINE Alu 1 170 0 23 33 0 0 chr3 86151265 86151295 -131885863 + AT_rich Low_complexity Low_complexity 1 30 0 1967 126 20 3 chr3 86151531 86151825 -131885333 + AluSx SINE Alu 6 304 -8 219 69 0 0 chr3 86151828 86151857 -131885301 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 25 0 0 0 chr3 86152233 86152258 -131884900 + AT_rich Low_complexity Low_complexity 1 25 0 2257 101 3 7 chr3 86152904 86153200 -131883958 + AluSx SINE Alu 3 297 -15 2102 133 0 0 chr3 86153539 86153839 -131883319 - AluSx SINE Alu -10 302 3 1807 160 0 31 chr3 86153842 86154017 -131883141 - AluJo SINE Alu -3 309 147 2253 134 0 6 chr3 86154017 86154331 -131882827 - AluSx SINE Alu 0 312 1 1807 160 0 31 chr3 86154331 86154474 -131882684 - AluJo SINE Alu -165 147 1 2132 130 0 0 chr3 86154553 86154846 -131882312 - AluSx SINE Alu -17 295 3 1316 178 89 0 chr3 86154851 86155134 -131882024 - AluSg SINE Alu 0 306 1 599 332 24 35 chr3 86157499 86157788 -131879370 - L2 LINE L2 0 3313 3028 256 222 0 0 chr3 86157944 86157989 -131879169 + AluJ/monomer SINE Alu 1 45 -257 351 89 0 0 chr3 86158090 86158135 -131879023 - Alu SINE Alu -256 45 1 216 308 26 86 chr3 86158162 86158279 -131878879 - MIR SINE MIR -96 112 3 2365 102 0 0 chr3 86158343 86158646 -131878512 - AluSg SINE Alu -7 303 1 249 226 245 0 chr3 86158698 86158804 -131878354 + L2 LINE L2 3182 3313 0 214 215 0 31 chr3 86158951 86159016 -131878142 - MIR SINE MIR -35 227 165 791 132 198 102 chr3 86159663 86159860 -131877298 - MER20 DNA MER1_type 0 219 4 1967 147 10 0 chr3 86159997 86160304 -131876854 - AluSx SINE Alu -2 310 1 1465 127 78 81 chr3 86160482 86160645 -131876513 - AluJo SINE Alu -6 306 143 1950 134 23 7 chr3 86160645 86160951 -131876207 - AluSx SINE Alu -1 311 1 1465 127 78 81 chr3 86160951 86161094 -131876064 - AluJo SINE Alu -169 143 1 580 319 58 12 chr3 86161104 86161345 -131875813 - MIR SINE MIR -8 254 3 1763 110 0 0 chr3 86161993 86162229 -131874929 - AluSg/x SINE Alu -5 307 72 917 133 0 16 chr3 86162646 86162774 -131874384 - FLAM_C SINE Alu -7 126 1 286 256 28 60 chr3 86162774 86162900 -131874258 - MIR SINE MIR -71 137 26 2297 123 0 0 chr3 86163946 86164256 -131872902 - AluSx SINE Alu -2 310 1 2299 48 14 0 chr3 86166089 86166382 -131870776 + AluY SINE Alu 1 297 -14 251 239 30 0 chr3 86166404 86166471 -131870687 + CT-rich Low_complexity Low_complexity 2 70 0 2484 49 13 0 chr3 86167207 86167514 -131869644 - AluY SINE Alu 0 311 1 522 165 0 0 chr3 86167519 86167622 -131869536 + CT-rich Low_complexity Low_complexity 2 104 0 2083 134 0 0 chr3 86167653 86167959 -131869199 - AluSx SINE Alu -6 306 1 215 61 30 0 chr3 86168221 86168254 -131868904 + (CA)n Simple_repeat Simple_repeat 2 35 0 2260 84 0 3 chr3 86168583 86168881 -131868277 - AluSq SINE Alu -16 297 1 273 303 204 26 chr3 86169523 86169675 -131867483 - MIR3 SINE MIR -4 204 26 2062 91 0 41 chr3 86169724 86170043 -131867115 + AluSx SINE Alu 3 308 -4 215 163 0 23 chr3 86170121 86170164 -131866994 + GA-rich Low_complexity Low_complexity 1 42 0 875 106 4 208 chr3 86170564 86170673 -131866485 - MER3 DNA MER1_type -13 196 159 2286 94 0 0 chr3 86170673 86170982 -131866176 - AluSg1 SINE Alu 0 309 1 875 106 4 208 chr3 86170982 86171108 -131866050 - MER3 DNA MER1_type -50 159 9 1273 151 124 15 chr3 86171538 86171803 -131865355 + AluJb SINE Alu 1 294 -18 995 241 129 39 chr3 86171859 86172301 -131864857 + MLT1F LTR MaLR 1 652 -2 267 189 77 195 chr3 86172302 86172471 -131864687 - MIR SINE MIR -2 260 112 2002 112 0 0 chr3 86172471 86172748 -131864410 + AluSq SINE Alu 1 277 -36 361 229 19 0 chr3 86172749 86172854 -131864304 + GA-rich Low_complexity Low_complexity 2 108 0 366 262 39 48 chr3 86172855 86172958 -131864200 - MIR SINE MIR -133 129 28 239 243 86 93 chr3 86173222 86173362 -131863796 - L2 LINE L2 -89 3183 3045 180 125 0 0 chr3 86174103 86174135 -131863023 + (TC)n Simple_repeat Simple_repeat 2 33 0 303 140 19 19 chr3 86174136 86174204 -131862954 + MLT2C1 LTR ERVL 351 397 0 2136 165 9 3 chr3 86174208 86174554 -131862604 - MER7A DNA MER2_type 0 346 1 502 300 28 11 chr3 86174611 86174791 -131862367 + MIR SINE MIR 11 193 -69 261 139 0 0 chr3 86174867 86174910 -131862248 - L1MC4 LINE L1 0 8042 8000 1976 125 0 3 chr3 86174914 86175201 -131861957 + AluSx SINE Alu 1 286 -26 344 267 0 0 chr3 86175239 86175329 -131861829 - L1MC4 LINE L1 -137 7905 7816 2518 44 0 0 chr3 86175361 86175657 -131861501 + AluY SINE Alu 1 296 -15 819 180 0 0 chr3 86175757 86175885 -131861273 - AluJb SINE Alu -65 247 120 979 241 159 50 chr3 86175950 86176428 -131860730 - HAL1 LINE L1 -697 1810 1281 * 1470 195 55 5 chr3 86176424 86176983 -131860175 - L1MB4 LINE L1 -7 6173 5479 1696 176 14 0 chr3 86177443 86177738 -131859420 - AluJo SINE Alu -13 299 1 1175 149 137 7 chr3 86177784 86178158 -131859000 + L1M1 LINE L1 5070 5484 -743 991 174 0 0 chr3 86178158 86178325 -131858833 + AluSg/x SINE Alu 136 302 -10 1240 186 0 5 chr3 86178328 86178543 -131858615 + L1M1 LINE L1 5493 5706 -594 334 122 61 0 chr3 86178661 86178710 -131858448 - Alu SINE Alu -250 52 1 609 280 104 42 chr3 86178777 86178987 -131858171 - LTR16C LTR ERVL -177 314 119 2018 85 0 4 chr3 86178987 86179258 -131857900 + AluSx SINE Alu 3 272 -40 915 58 29 0 chr3 86179258 86179396 -131857762 + (GAAA)n Simple_repeat Simple_repeat 3 144 0 609 280 104 42 chr3 86179396 86179473 -131857685 - LTR16C LTR ERVL -371 120 8 267 272 134 65 chr3 86179627 86179873 -131857285 - L3 LINE CR1 -290 1287 1025 967 252 25 18 chr3 86179894 86180176 -131856982 + MER58B DNA MER1_type 56 339 -2 2426 42 0 0 chr3 86180231 86180520 -131856638 + AluY SINE Alu 1 289 -22 507 254 32 122 chr3 86180680 86180768 -131856390 - L1MC4a LINE L1 -1838 5970 5876 2271 95 0 0 chr3 86180768 86181072 -131856086 - AluSx SINE Alu -6 306 3 507 254 32 122 chr3 86181072 86181385 -131855773 - L1MC4a LINE L1 -1932 5876 5605 24 0 0 29 chr3 86181393 86181409 -131855749 + AT_rich Low_complexity Low_complexity 1 16 -18 2169 106 6 0 chr3 86181409 86181720 -131855438 - AluSp SINE Alu 0 313 1 24 0 0 29 chr3 86181720 86181738 -131855420 + AT_rich Low_complexity Low_complexity 16 34 0 517 92 0 0 chr3 86181738 86181803 -131855355 - U6 snRNA snRNA -41 66 2 1947 144 3 0 chr3 86181821 86182126 -131855032 - AluSq SINE Alu -7 306 1 185 178 22 0 chr3 86182173 86182218 -131854940 + CT-rich Low_complexity Low_complexity 2 47 0 1180 181 36 65 chr3 86182572 86182849 -131854309 + AluJb SINE Alu 1 269 -43 29 0 0 0 chr3 86183035 86183064 -131854094 + AT_rich Low_complexity Low_complexity 1 29 0 1509 104 36 113 chr3 86183317 86183652 -131853506 - AluYb8 SINE Alu -9 309 1 242 119 24 0 chr3 86184018 86184035 -131853123 - Alu SINE Alu -149 154 139 1568 137 95 11 chr3 86184035 86184319 -131852839 - AluSx SINE Alu -4 308 1 242 119 24 0 chr3 86184319 86184343 -131852815 - Alu SINE Alu -164 139 112 1735 129 20 41 chr3 86185210 86185505 -131851653 - AluSx SINE Alu -19 293 5 487 298 77 6 chr3 86185545 86185726 -131851432 + MIR SINE MIR 62 255 -7 263 263 132 18 chr3 86185913 86186027 -131851131 + MIR SINE MIR 103 229 -33 190 283 53 72 chr3 86186132 86186281 -131850877 + MIR3 SINE MIR 15 160 -48 350 197 141 49 chr3 86186281 86186423 -131850735 - MER5A DNA MER1_type 0 189 35 2203 103 0 3 chr3 86186504 86186814 -131850344 + AluSg SINE Alu 1 309 -1 22 0 0 0 chr3 86187276 86187298 -131849860 + AT_rich Low_complexity Low_complexity 1 22 0 206 62 31 0 chr3 86187327 86187359 -131849799 + (CA)n Simple_repeat Simple_repeat 2 34 0 552 283 26 37 chr3 86187381 86187531 -131849627 + MIR SINE MIR 25 174 -88 1781 202 119 49 chr3 86187531 86188086 -131849072 + MLT1G1 LTR MaLR 1 594 -1 552 283 26 37 chr3 86188086 86188126 -131849032 + MIR SINE MIR 174 213 -49 369 330 20 10 chr3 86188192 86188395 -131848763 + L1M4 LINE L1 2574 2778 -3368 704 281 84 29 chr3 86188399 86188709 -131848449 - L2 LINE L2 0 3313 2987 287 290 57 56 chr3 86188815 86188985 -131848173 - MER5A DNA MER1_type 0 189 1 504 236 198 6 chr3 86189057 86189214 -131847944 + MER5A DNA MER1_type 1 187 -2 1127 134 0 0 chr3 86191197 86191369 -131845789 - AluSg/x SINE Alu -13 299 128 534 318 56 14 chr3 86191569 86191783 -131845375 - MIR SINE MIR -39 223 1 * 658 300 45 53 chr3 86191755 86191995 -131845163 - L2 LINE L2 0 3313 3077 2089 119 0 3 chr3 86191995 86192298 -131844860 - AluSx SINE Alu -10 302 1 658 300 45 53 chr3 86192298 86192524 -131844634 - L2 LINE L2 -236 3077 2851 295 345 12 0 chr3 86193017 86193182 -131843976 + L1MC4a LINE L1 5732 5898 -1910 205 319 106 51 chr3 86193326 86193598 -131843560 + L2 LINE L2 2722 2978 -294 2208 98 0 3 chr3 86193598 86193895 -131843263 - AluSg SINE Alu -14 296 1 205 319 106 51 chr3 86193895 86194139 -131843019 + L2 LINE L2 2978 3270 -2 432 0 0 0 chr3 86194167 86194215 -131842943 + (TG)n Simple_repeat Simple_repeat 1 48 0 1830 118 37 4 chr3 86194215 86194487 -131842671 - AluSx SINE Alu -31 281 1 234 0 0 0 chr3 86194619 86194645 -131842513 + (T)n Simple_repeat Simple_repeat 1 26 0 693 300 52 35 chr3 86194728 86194958 -131842200 + MIR SINE MIR 14 247 -15 457 287 9 0 chr3 86195027 86195135 -131842023 + L2 LINE L2 3201 3309 -4 1345 85 0 0 chr3 86195181 86195358 -131841800 - AluY SINE Alu -4 307 131 1886 127 0 43 chr3 86195420 86195744 -131841414 - AluSx SINE Alu -2 310 1 189 0 0 0 chr3 86195744 86195765 -131841393 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 2034 98 29 0 chr3 86195767 86196041 -131841117 - AluSx SINE Alu -30 282 1 2143 110 0 0 chr3 86196361 86196653 -131840505 - AluSg SINE Alu -14 296 5 660 317 53 12 chr3 86196691 86196934 -131840224 - MIR SINE MIR -8 254 2 587 213 6 62 chr3 86196938 86197098 -131840060 + MER103 DNA DNA 11 161 -5 898 206 27 0 chr3 86197811 86197995 -131839163 - MER5A DNA MER1_type 0 189 1 1882 167 60 20 chr3 86198057 86198418 -131838740 - L1MB5 LINE L1 -8 6166 5786 219 69 0 0 chr3 86198418 86198447 -131838711 + (TG)n Simple_repeat Simple_repeat 2 30 0 1882 167 60 20 chr3 86198447 86198486 -131838672 - L1MB5 LINE L1 -388 5786 5750 522 279 20 40 chr3 86198486 86198545 -131838613 + MIR SINE MIR 66 125 -137 1450 210 0 10 chr3 86198545 86198845 -131838313 - AluJb SINE Alu -15 297 1 522 279 20 40 chr3 86198845 86198986 -131838172 + MIR SINE MIR 125 262 0 277 326 0 0 chr3 86198998 86199084 -131838074 - LTR16C LTR ERVL 0 491 406 1878 139 0 7 chr3 86199085 86199380 -131837778 - AluSx SINE Alu -19 293 1 233 35 0 0 chr3 86199528 86199557 -131837601 - AluSg SINE Alu -272 29 1 308 309 162 16 chr3 86199627 86199803 -131837355 - MLT1L LTR MaLR -95 463 239 1457 76 0 0 chr3 86200553 86200738 -131836420 + U2 snRNA snRNA 3 187 -1 3624 70 19 6 chr3 86201065 86201552 -131835606 - L1PA8 LINE L1 0 6172 5680 1013 267 77 47 chr3 86202055 86202459 -131834699 + LTR16C LTR ERVL 4 419 -72 2055 99 3 24 chr3 86202459 86202753 -131834405 + AluSx SINE Alu 14 301 -11 481 319 42 10 chr3 86204982 86205188 -131831970 + MIR SINE MIR 14 225 -37 648 273 80 13 chr3 86205311 86205549 -131831609 - MIR SINE MIR -1 261 8 37 0 0 0 chr3 86205824 86205861 -131831297 + AT_rich Low_complexity Low_complexity 1 37 0 438 161 306 16 chr3 86206006 86206130 -131831028 + MIR SINE MIR 28 187 -75 1893 148 0 10 chr3 86206249 86206547 -131830611 + AluSx SINE Alu 1 295 -17 300 71 36 71 chr3 86206572 86206628 -131830530 + Alu SINE Alu 247 300 0 1937 128 23 0 chr3 86206730 86207036 -131830122 - AluSq SINE Alu 0 313 1 265 277 20 10 chr3 86207134 86207235 -131829923 - L1MC/D LINE L1 -1957 5851 5750 1080 252 100 19 chr3 86207469 86207924 -131829234 - HsTC2c DNA Tc2 -14 715 122 339 232 139 26 chr3 86208079 86208230 -131828928 - L2 LINE L2 -123 3190 3023 2098 118 0 13 chr3 86208493 86208799 -131828359 - AluSx SINE Alu -10 302 1 185 204 136 0 chr3 86208850 86208894 -131828264 + L2 LINE L2 3222 3271 -1 303 274 167 0 chr3 86208954 86209056 -131828102 - L1MC4a LINE L1 -1732 6076 5958 746 228 89 0 chr3 86209057 86209215 -131827943 + AluJb SINE Alu 122 293 -19 1370 184 53 43 chr3 86209235 86209517 -131827641 + AluJo SINE Alu 2 286 -16 446 115 58 23 chr3 86209549 86209723 -131827435 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 497 231 119 17 chr3 86209746 86209797 -131827361 - L1MC4a LINE L1 -444 5677 5633 2116 106 0 13 chr3 86209797 86210100 -131827058 - AluSx SINE Alu -13 299 1 497 231 119 17 chr3 86210100 86210472 -131826686 - L1MC4a LINE L1 -488 5633 5279 225 0 0 0 chr3 86210684 86210709 -131826449 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 670 200 14 41 chr3 86210709 86210854 -131826304 - FRAM SINE Alu -30 146 6 487 278 76 55 chr3 86210977 86211301 -131825857 - L1MC4a LINE L1 -1226 4920 4579 1960 117 0 3 chr3 86211301 86211603 -131825555 - AluSx SINE Alu 0 301 1 487 278 76 55 chr3 86211603 86211788 -131825370 - L1MC4a LINE L1 -1567 4579 4399 1324 194 88 19 chr3 86211799 86212118 -131825040 + MER58B DNA MER1_type 1 341 0 1893 140 13 3 chr3 86212123 86212430 -131824728 - AluSx SINE Alu 0 312 3 2211 103 0 0 chr3 86212447 86212749 -131824409 - AluSc SINE Alu -7 302 1 1711 142 32 26 chr3 86213685 86213995 -131823163 - AluSx SINE Alu 0 312 1 1787 143 45 0 chr3 86214175 86214462 -131822696 - AluSg SINE Alu -10 300 1 540 196 0 0 chr3 86214777 86214879 -131822279 + U13 snRNA snRNA 1 102 -2 2316 109 0 0 chr3 86215581 86215893 -131821265 + AluSx SINE Alu 1 312 0 415 275 36 14 chr3 86215905 86216057 -131821101 - MIR SINE MIR -62 146 35 1191 104 44 27 chr3 86216190 86216373 -131820785 - AluSg SINE Alu -124 186 1 3206 129 34 31 chr3 86216374 86216986 -131820172 + L1MA4 LINE L1 5681 6294 -6 654 230 105 20 chr3 86217906 86218106 -131819052 + MER20 DNA MER1_type 1 217 -2 1779 105 0 72 chr3 86218821 86219098 -131818060 - AluSg SINE Alu 0 310 54 2188 107 3 0 chr3 86219589 86219880 -131817278 - AluSq SINE Alu -21 292 1 1727 87 9 9 chr3 86220005 86220236 -131816922 + AluSq SINE Alu 70 300 -13 392 298 98 57 chr3 86220330 86220666 -131816492 + L1ME4a LINE L1 5384 5762 -359 1932 134 6 42 chr3 86220666 86220979 -131816179 - AluSx SINE Alu -10 302 1 392 298 98 57 chr3 86220979 86221062 -131816096 + L1ME4a LINE L1 5762 5840 -281 234 222 28 0 chr3 86221318 86221390 -131815768 - L1M4 LINE L1 -1278 4868 4795 2318 98 0 3 chr3 86222524 86222829 -131814329 - AluSc SINE Alu -5 304 1 1470 171 51 10 chr3 86223630 86223923 -131813235 - L1M4 LINE L1 -541 5637 5333 * 1489 183 89 29 chr3 86223919 86224387 -131812771 - L1MB3 LINE L1 -17 6166 5728 210 37 0 0 chr3 86224387 86224414 -131812744 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1489 183 89 29 chr3 86224414 86224484 -131812674 - L1MB3 LINE L1 -455 5728 5664 1833 123 54 4 chr3 86224484 86224760 -131812398 + AluSg SINE Alu 1 290 -20 1489 183 89 29 chr3 86224760 86225164 -131811994 - L1MB3 LINE L1 -519 5664 5099 1699 148 3 34 chr3 86225178 86225469 -131811689 - AluJo SINE Alu -30 282 1 1868 226 58 34 chr3 86225522 86225693 -131811465 - Charlie1a DNA MER1_type -2065 696 531 1873 121 67 7 chr3 86225693 86225975 -131811183 - AluSx SINE Alu -13 299 1 1868 226 58 34 chr3 86225975 86226426 -131810732 - Charlie1a DNA MER1_type -2230 531 59 23 0 0 0 chr3 86227321 86227344 -131809814 + AT_rich Low_complexity Low_complexity 1 23 0 2238 114 0 3 chr3 86228034 86228340 -131808818 - AluSc SINE Alu -3 306 2 1807 111 18 21 chr3 86228415 86228720 -131808438 - AluSg SINE Alu 0 304 1 2214 108 0 3 chr3 86229383 86229679 -131807479 + AluY SINE Alu 1 295 -16 49 60 0 0 chr3 86229910 86229994 -131807164 + AT_rich Low_complexity Low_complexity 1 84 0 1850 132 21 0 chr3 86230098 86230277 -131806881 - AluSx SINE Alu 0 315 126 189 74 0 0 chr3 86230277 86230304 -131806854 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1850 132 21 0 chr3 86230304 86230433 -131806725 - AluSx SINE Alu -189 126 1 27 29 0 0 chr3 86230617 86230651 -131806507 + AT_rich Low_complexity Low_complexity 1 34 0 408 280 143 70 chr3 86230868 86231081 -131806077 - L1MC4a LINE L1 -1959 5849 5653 2282 103 0 0 chr3 86231081 86231383 -131805775 - AluSp SINE Alu -11 302 1 408 280 143 70 chr3 86231383 86231715 -131805443 - L1MC4a LINE L1 -2155 5653 5264 2320 83 3 0 chr3 86231791 86232093 -131805065 - AluY SINE Alu -8 303 1 188 359 120 34 chr3 86232125 86232242 -131804916 + L2 LINE L2 3121 3247 -25 225 266 16 0 chr3 86232256 86232320 -131804838 + (TGAA)n Simple_repeat Simple_repeat 2 66 0 210 163 0 23 chr3 86232402 86232445 -131804713 + T-rich Low_complexity Low_complexity 2 43 0 2374 77 0 0 chr3 86233797 86234094 -131803064 + AluY SINE Alu 1 297 -14 1584 114 0 5 chr3 86234176 86234387 -131802771 - AluSx SINE Alu -102 210 1 258 273 47 81 chr3 86235383 86235555 -131801603 - MIR SINE MIR 0 262 97 306 0 0 0 chr3 86235587 86235621 -131801537 + (TG)n Simple_repeat Simple_repeat 2 35 0 23 0 0 0 chr3 86235621 86235644 -131801514 + AT_rich Low_complexity Low_complexity 1 23 0 907 116 14 48 chr3 86235833 86235979 -131801179 - AluSq SINE Alu -17 296 156 614 87 11 11 chr3 86235979 86236071 -131801087 - AluSq SINE Alu -220 92 1 226 360 22 11 chr3 86237932 86238021 -131799137 + MIR SINE MIR 4 93 -169 1776 99 46 0 chr3 86238689 86238972 -131798186 - L1MA3 LINE L1 -5 6300 6005 241 208 0 0 chr3 86239535 86239583 -131797575 - MER103 DNA DNA -49 117 70 2221 113 7 0 chr3 86239823 86240124 -131797034 + AluSg SINE Alu 1 303 -7 303 284 314 0 chr3 86240541 86240710 -131796448 + MIR SINE MIR 39 260 -2 784 180 90 76 chr3 86241656 86241867 -131795291 - MER20 DNA MER1_type -5 214 1 645 206 63 16 chr3 86241902 86242028 -131795130 - FRAM SINE Alu -44 132 1 198 0 0 0 chr3 86243485 86243507 -131793651 + (A)n Simple_repeat Simple_repeat 1 22 0 1941 139 0 20 chr3 86243509 86243803 -131793355 + AluSx SINE Alu 3 290 -22 213 132 0 0 chr3 86245274 86245312 -131791846 + (GAA)n Simple_repeat Simple_repeat 3 40 0 22 0 0 0 chr3 86246149 86246171 -131790987 + AT_rich Low_complexity Low_complexity 1 22 0 273 57 0 0 chr3 86246398 86246433 -131790725 + (TA)n Simple_repeat Simple_repeat 2 36 0 21 57 0 0 chr3 86247721 86247756 -131789402 + AT_rich Low_complexity Low_complexity 1 35 0 796 187 9 61 chr3 86249734 86249865 -131787293 + MER3 DNA MER1_type 5 122 -87 2068 128 7 10 chr3 86249865 86250171 -131786987 - AluSq SINE Alu -8 305 1 796 187 9 61 chr3 86250171 86250253 -131786905 + MER3 DNA MER1_type 122 207 -2 204 313 62 0 chr3 86250262 86250326 -131786832 + MIR SINE MIR 8 75 -187 22 0 0 0 chr3 86250528 86250550 -131786608 + AT_rich Low_complexity Low_complexity 1 22 0 250 265 37 73 chr3 86251203 86251339 -131785819 - L2 LINE L2 -70 3243 3113 1908 140 0 54 chr3 86251471 86251786 -131785372 - AluSx SINE Alu -13 299 2 459 152 89 45 chr3 86251787 86251899 -131785259 - FLAM_A SINE Alu -6 136 20 937 171 21 0 chr3 86251941 86252134 -131785024 - L1MA5 LINE L1 0 6300 6104 760 142 9 0 chr3 86252134 86252247 -131784911 + FLAM_C SINE Alu 2 115 -28 1315 183 119 40 chr3 86252392 86252667 -131784491 + L1MD3 LINE L1 7589 7903 -92 2087 147 0 16 chr3 86252667 86252981 -131784177 + AluJb SINE Alu 1 309 -3 1315 183 119 40 chr3 86252981 86253082 -131784076 + L1MD3 LINE L1 7903 7995 0 41 103 0 0 chr3 86253307 86253453 -131783705 + AT_rich Low_complexity Low_complexity 1 146 0 806 218 82 48 chr3 86253658 86253974 -131783184 + MLT1K LTR MaLR 241 567 -21 270 296 10 113 chr3 86254089 86254292 -131782866 + MIR SINE MIR 39 220 -42 2048 157 0 6 chr3 86254565 86254878 -131782280 + AluJb SINE Alu 1 311 -1 218 253 120 13 chr3 86254916 86254991 -131782167 - L2 LINE L2 -23 3290 3208 1550 122 122 19 chr3 86255204 86255466 -131781692 - AluSg1 SINE Alu -16 293 5 188 211 0 19 chr3 86256599 86256651 -131780507 + CT-rich Low_complexity Low_complexity 4 54 0 189 0 0 0 chr3 86256847 86256868 -131780290 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1157 170 22 125 chr3 86256868 86257030 -131780128 - AluY SINE Alu -32 279 163 2222 101 7 0 chr3 86257030 86257318 -131779840 + AluSg SINE Alu 1 290 -20 1157 170 22 125 chr3 86257318 86257466 -131779692 - AluY SINE Alu -148 163 1 21 0 0 0 chr3 86258453 86258474 -131778684 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chr3 86258683 86258724 -131778434 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 247 326 33 11 chr3 86258778 86258870 -131778288 + MIR SINE MIR 69 162 -100 2059 146 0 26 chr3 86259103 86259412 -131777746 - AluSx SINE Alu -11 301 1 398 265 65 100 chr3 86259467 86259928 -131777230 + MLT1K LTR MaLR 142 586 -2 2756 179 8 6 chr3 86260492 86260977 -131776181 - MER66B LTR ERV1 0 486 1 2959 150 45 107 chr3 86261152 86262110 -131775048 + L1MB7 LINE L1 5103 6011 -173 685 243 64 12 chr3 86262884 86263057 -131774101 - MIR SINE MIR 0 262 81 253 250 13 0 chr3 86263115 86263191 -131773967 + MER103 DNA DNA 28 104 -62 252 267 26 86 chr3 86263233 86263349 -131773809 - MIR SINE MIR -152 110 2 259 247 10 93 chr3 86263924 86264021 -131773137 - MLT1H LTR MaLR -205 344 256 3817 204 52 48 chr3 86264120 86264169 -131772989 - L1MD1 LINE L1 -22 6220 6173 2296 102 14 0 chr3 86264169 86264462 -131772696 + AluSx SINE Alu 1 297 -15 3817 204 52 48 chr3 86264462 86264600 -131772558 - L1MD1 LINE L1 -69 6173 6037 273 98 0 0 chr3 86264600 86264641 -131772517 + (TG)n Simple_repeat Simple_repeat 2 42 0 3817 204 52 48 chr3 86264641 86264692 -131772466 - L1MD1 LINE L1 -205 6037 5988 2065 121 7 7 chr3 86264692 86264982 -131772176 - AluSx SINE Alu -22 290 1 3817 204 52 48 chr3 86264982 86266611 -131770547 - L1MD1 LINE L1 -254 5988 4338 1836 167 94 0 chr3 86266611 86266929 -131770229 - MER7A DNA MER2_type 0 346 1 3817 204 52 48 chr3 86266929 86266947 -131770211 - L1MD1 LINE L1 -1904 4338 4322 2386 76 0 16 chr3 86266947 86267250 -131769908 + AluSc SINE Alu 1 298 -11 571 53 0 0 chr3 86269068 86269144 -131768014 - L1PA4 LINE L1 0 6155 6080 511 69 28 0 chr3 86269157 86269229 -131767929 - L1PA4 LINE L1 -2 6153 6080 22 111 0 0 chr3 86269621 86269720 -131767438 + AT_rich Low_complexity Low_complexity 1 99 0 448 216 10 10 chr3 86270169 86270271 -131766887 - MER103 DNA DNA -47 119 18 468 313 58 16 chr3 86270288 86270531 -131766627 + MIR SINE MIR 2 254 -8 2197 117 0 0 chr3 86270569 86270860 -131766298 + AluSg SINE Alu 5 295 -15 1350 173 30 4 chr3 86271179 86271416 -131765742 + AluSx SINE Alu 1 243 -69 448 289 0 13 chr3 86272319 86272468 -131764690 + LTR33 LTR ERVL 1 147 -374 1779 161 10 0 chr3 86274097 86274388 -131762770 + AluJb SINE Alu 1 294 -18 271 233 22 67 chr3 86274989 86275079 -131762079 + L2 LINE L2 2431 2516 -798 2076 153 88 6 chr3 86275179 86275533 -131761625 - MSTB LTR MaLR -43 383 1 7306 60 0 0 chr3 86275564 86276733 -131760425 - L1PA6 LINE L1 0 6154 4985 2203 120 3 0 chr3 86276733 86277041 -131760117 - AluSx SINE Alu -1 311 3 376 129 0 0 chr3 86277060 86277122 -131760036 - L1PA16 LINE L1 -7 6159 6098 436 224 20 10 chr3 86277123 86277221 -131759937 - L1PA16 LINE L1 -105 6061 5963 1293 161 26 0 chr3 86277300 86277530 -131759628 - L1PA13 LINE L1 -5 6158 5923 1305 171 27 7 chr3 86277533 86277831 -131759327 - AluY SINE Alu -7 304 1 973 163 0 22 chr3 86277956 86278157 -131759001 - L1M4 LINE L1 -721 5453 5260 413 241 50 28 chr3 86278247 86278388 -131758770 + MER103 DNA DNA 22 165 -1 2312 101 0 0 chr3 86278845 86279141 -131758017 + AluY SINE Alu 1 296 -15 288 274 146 55 chr3 86279485 86279649 -131757509 + MER20B DNA MER1_type 1 179 -604 203 321 36 12 chr3 86279774 86279858 -131757300 + L2 LINE L2 2888 2973 -340 985 289 71 45 chr3 86280000 86280314 -131756844 + MLT1I LTR MaLR 19 346 -63 2154 110 0 7 chr3 86280314 86280646 -131756512 - AluSx SINE Alu 0 312 5 985 289 71 45 chr3 86280646 86280712 -131756446 + MLT1I LTR MaLR 346 409 0 2061 138 0 7 chr3 86280738 86280901 -131756257 - AluJb SINE Alu -16 296 134 2343 97 0 3 chr3 86280901 86281210 -131755948 - AluY SINE Alu -3 308 1 2061 138 0 7 chr3 86281210 86281344 -131755814 - AluJb SINE Alu -178 134 1 181 352 46 9 chr3 86281352 86281460 -131755698 + L2 LINE L2 3116 3227 -45 1176 151 0 28 chr3 86281464 86281676 -131755482 - MLT1F1 LTR MaLR 0 542 337 1343 223 61 46 chr3 86281913 86282259 -131754899 - MLT1F1 LTR MaLR -216 351 1 2388 109 0 0 chr3 86283323 86283635 -131753523 - AluSq SINE Alu -1 312 1 751 306 64 39 chr3 86284957 86285200 -131751958 + MER20B DNA MER1_type 1 257 -526 2224 66 37 0 chr3 86285200 86285507 -131751651 - AluY SINE Alu 0 317 1 751 306 64 39 chr3 86285507 86285592 -131751566 + MER20B DNA MER1_type 257 338 -445 930 235 72 0 chr3 86285637 86285901 -131751257 + MER20B DNA MER1_type 440 722 -61 394 237 11 0 chr3 86286338 86286431 -131750727 + MIR SINE MIR 2 95 -167 1476 119 5 0 chr3 86286921 86287123 -131750035 - AluSp SINE Alu -11 302 100 2272 100 0 13 chr3 86287267 86287566 -131749592 - AluSg SINE Alu -15 295 1 3401 209 9 6 chr3 86287945 86288590 -131748568 - MER82 DNA MER2_type -6 647 1 632 186 161 56 chr3 86288654 86288731 -131748427 - MER45A DNA AcHobo -1403 178 111 1918 121 35 17 chr3 86288731 86289055 -131748103 + AluSx SINE Alu 2 312 0 632 186 161 56 chr3 86289055 86289138 -131748020 - MER45A DNA AcHobo -1470 111 1 566 236 89 100 chr3 86289816 86289835 -131747323 + MER102b DNA MER1_type 46 64 -1364 1498 163 49 60 chr3 86289835 86290204 -131746954 - MLT1A1 LTR MaLR 0 365 1 566 236 89 100 chr3 86290204 86290464 -131746694 + MER102b DNA MER1_type 64 322 -19 536 273 107 74 chr3 86291407 86291828 -131745330 - MLT1H1 LTR MaLR -3 552 118 1909 177 23 14 chr3 86291841 86292192 -131744966 + MLT2D LTR ERVL 1 354 -60 207 173 0 0 chr3 86292202 86292254 -131744904 + CT-rich Low_complexity Low_complexity 2 53 0 748 144 23 23 chr3 86294743 86294875 -131742283 - FLAM_A SINE Alu -1 132 1 2203 105 3 0 chr3 86294887 86295182 -131741976 - AluSc SINE Alu -13 296 1 33 35 0 17 chr3 86295554 86295575 -131741583 + AT_rich Low_complexity Low_complexity 1 21 -36 2005 153 3 0 chr3 86295575 86295862 -131741296 - AluSx SINE Alu -24 288 1 33 35 0 17 chr3 86295862 86295898 -131741260 + AT_rich Low_complexity Low_complexity 21 57 0 381 162 0 0 chr3 86295925 86295993 -131741165 + (TA)n Simple_repeat Simple_repeat 2 69 0 346 252 163 0 chr3 86296059 86296182 -131740976 + MER5B DNA MER1_type 2 144 -34 210 250 15 29 chr3 86296570 86296638 -131740520 + L3 LINE CR1 573 639 -938 448 320 35 31 chr3 86296639 86296712 -131740446 + L3 LINE CR1 1338 1409 -168 2434 80 3 0 chr3 86296712 86297011 -131740147 - AluSc SINE Alu -9 300 1 448 320 35 31 chr3 86297011 86297165 -131739993 + L3 LINE CR1 1409 1566 -11 593 248 0 13 chr3 86298950 86299099 -131738059 + LTR33 LTR ERVL 1 147 -374 377 233 0 19 chr3 86299301 86299404 -131737754 + LTR33 LTR ERVL 414 514 -7 384 222 0 14 chr3 86299417 86299489 -131737669 + MER20 DNA MER1_type 1 71 -148 5402 130 21 0 chr3 86299496 86300302 -131736856 - L1PA15 LINE L1 -9 6156 5334 894 143 18 48 chr3 86300302 86300470 -131736688 + MER20 DNA MER1_type 55 217 -2 2424 76 0 13 chr3 86300817 86301121 -131736037 - AluY SINE Alu -11 300 1 24 0 0 0 chr3 86302213 86302237 -131734921 + AT_rich Low_complexity Low_complexity 1 24 0 224 371 43 0 chr3 86302942 86303058 -131734100 - MER5A DNA MER1_type 0 189 69 458 241 11 17 chr3 86304234 86304408 -131732750 + CT-rich Low_complexity Low_complexity 1 173 0 397 292 124 5 chr3 86304686 86304895 -131732263 - MIR SINE MIR -4 258 25 2085 90 3 21 chr3 86305522 86305850 -131731308 + AluSg SINE Alu 1 323 0 452 262 86 32 chr3 86306021 86306242 -131730916 - MER97c DNA MER1_type? -43 1047 815 21 0 0 0 chr3 86306400 86306421 -131730737 + AT_rich Low_complexity Low_complexity 1 21 0 1772 237 36 36 chr3 86306603 86306799 -131730359 - MER97c DNA MER1_type? -485 605 410 2042 146 7 0 chr3 86306799 86307101 -131730057 - AluSx SINE Alu -8 304 1 1772 237 36 36 chr3 86307101 86307432 -131729726 - MER97c DNA MER1_type? -679 411 78 593 222 124 78 chr3 86308567 86308873 -131728285 + LTR33A LTR ERVL 2 321 -202 2112 167 77 15 chr3 86308874 86309275 -131727883 - MSTB LTR MaLR 0 426 1 1807 109 28 0 chr3 86309903 86310150 -131727008 - AluSx SINE Alu -58 254 1 5651 222 36 34 chr3 86310166 86311063 -131726095 - L1MDb LINE L1 -1865 4675 3782 1923 135 3 14 chr3 86311063 86311539 -131725619 - AluSx SINE Alu 0 473 1 5651 222 36 34 chr3 86311539 86312427 -131724731 - L1MDb LINE L1 -2758 3782 2884 1142 222 123 51 chr3 86312427 86312760 -131724398 - MLT1A1 LTR MaLR -8 357 1 4671 248 48 43 chr3 86312760 86313535 -131723623 - L1MDb LINE L1 -3663 2877 2108 2226 113 0 17 chr3 86313535 86313836 -131723322 - AluSg SINE Alu -14 296 1 4671 248 48 43 chr3 86313836 86313882 -131723276 - L1MDb LINE L1 -4432 2108 2064 2097 173 8 8 chr3 86313882 86314247 -131722911 - MLT1A1 LTR MaLR 0 365 1 4671 248 48 43 chr3 86314247 86315401 -131721757 - L1MDb LINE L1 -4476 2064 844 228 318 16 0 chr3 86315638 86315701 -131721457 - L1MDb LINE L1 -6151 392 329 791 248 71 13 chr3 86315989 86316245 -131720913 - L1MDb LINE L1 -6241 302 43 446 275 41 23 chr3 86316260 86316431 -131720727 - MLT1H LTR MaLR -375 174 1 567 162 171 9 chr3 86317089 86317200 -131719958 + FLAM_A SINE Alu 1 129 -4 2387 63 7 0 chr3 86317343 86317627 -131719531 - AluY SINE Alu -25 286 1 430 279 14 20 chr3 86317725 86317872 -131719286 - MIR SINE MIR -58 204 59 1978 136 4 0 chr3 86317915 86318194 -131718964 + AluSg SINE Alu 2 281 -29 651 88 0 0 chr3 86318194 86318285 -131718873 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 2500 66 0 0 chr3 86318862 86319165 -131717993 + AluY SINE Alu 1 303 -8 216 0 0 0 chr3 86320571 86320595 -131716563 + (T)n Simple_repeat Simple_repeat 1 24 0 26 30 0 0 chr3 86320870 86320903 -131716255 + AT_rich Low_complexity Low_complexity 1 33 0 2384 136 61 19 chr3 86321501 86321928 -131715230 - MER65A LTR ERV1 0 445 1 244 138 100 75 chr3 86322910 86322990 -131714168 - L1MC4a LINE L1 -1830 5978 5897 2215 91 30 13 chr3 86323217 86323515 -131713643 - AluSq SINE Alu -10 303 1 285 345 30 18 chr3 86323752 86323920 -131713238 - MER5A DNA MER1_type -2 187 18 197 316 20 20 chr3 86324454 86324552 -131712606 + MER5A DNA MER1_type 7 104 -85 651 183 150 7 chr3 86324801 86324954 -131712204 - MER5A DNA MER1_type -6 183 9 191 274 95 0 chr3 86325910 86325994 -131711164 + L2 LINE L2 3200 3291 -22 581 214 87 14 chr3 86326260 86326399 -131710759 + MLT1J LTR MaLR 1 112 -338 671 211 247 22 chr3 86326439 86326662 -131710496 + MLT1J LTR MaLR 239 511 0 252 289 12 36 chr3 86326829 86326912 -131710246 + MIR SINE MIR 80 160 -102 2203 108 10 0 chr3 86327057 86327354 -131709804 - AluSq SINE Alu -13 300 1 2258 72 7 39 chr3 86328028 86328333 -131708825 - AluSc SINE Alu -14 295 1 805 94 120 0 chr3 86328943 86329060 -131708098 - AluSc SINE Alu -178 131 1 2067 142 3 0 chr3 86329065 86329368 -131707790 - AluSx SINE Alu -8 304 1 2086 151 0 3 chr3 86330994 86331298 -131705860 + AluSx SINE Alu 1 303 -9 814 228 6 0 chr3 86331588 86331750 -131705408 - FRAM SINE Alu -13 163 1 1566 165 80 53 chr3 86331838 86332177 -131704981 + MER7A DNA MER2_type 1 346 0 1010 226 11 41 chr3 86332177 86332450 -131704708 - MLT1B LTR MaLR -2 503 124 2312 111 0 13 chr3 86332481 86332796 -131704362 - AluSx SINE Alu -1 311 1 403 278 125 17 chr3 86332828 86333004 -131704154 - MLT1J LTR MaLR -316 195 1 2362 93 0 0 chr3 86333049 86333351 -131703807 - AluY SINE Alu -9 302 1 885 196 0 0 chr3 86333384 86333532 -131703626 - AluJb SINE Alu -28 284 137 2728 63 6 0 chr3 86333824 86334158 -131703000 - LTR12 LTR ERV1 0 714 379 4702 89 181 6 chr3 86334161 86334861 -131702297 - LTR12 LTR ERV1 -3 823 1 5814 90 11 5 chr3 86334864 86335653 -131701505 - HERV9 LTR ERV1 -2 8397 7604 2777 167 118 51 chr3 86335632 86336476 -131700682 - Harlequin LTR ERV1 -5156 1740 840 * 6325 94 3 36 chr3 86336469 86337374 -131699784 - Harlequin LTR ERV1 -3445 4954 4080 15831 104 9 10 chr3 86337381 86340569 -131696589 - Harlequin LTR ERV1 -5260 3139 40 2600 62 169 191 chr3 86340579 86341176 -131695982 - LTR12 LTR ERV1 -130 584 1 21 36 0 0 chr3 86341252 86341280 -131695878 + AT_rich Low_complexity Low_complexity 1 28 0 276 281 111 47 chr3 86342046 86342217 -131694941 + MIR SINE MIR 52 233 -29 239 144 165 62 chr3 86342253 86342350 -131694808 + MER5B DNA MER1_type 3 109 -69 917 127 33 75 chr3 86342636 86342848 -131694310 - L1MB2 LINE L1 -3 6168 5966 313 202 48 67 chr3 86343098 86343202 -131693956 + MIR SINE MIR 70 171 -91 21 0 0 0 chr3 86343291 86343312 -131693846 + AT_rich Low_complexity Low_complexity 1 21 0 698 259 35 66 chr3 86343348 86343634 -131693524 + MER20B DNA MER1_type 33 309 -474 5807 83 6 1 chr3 86343793 86344881 -131692277 - L1PA6 LINE L1 -76 6078 4985 2306 110 3 0 chr3 86344881 86345191 -131691967 - AluSx SINE Alu -1 311 1 406 113 0 0 chr3 86345208 86345270 -131691888 - L1PA16 LINE L1 -7 6159 6098 436 224 20 10 chr3 86345271 86345369 -131691789 - L1PA16 LINE L1 -105 6061 5963 1507 114 26 0 chr3 86345448 86345676 -131691482 - L1PA13 LINE L1 -5 6158 5925 2410 94 0 0 chr3 86345677 86345985 -131691173 - AluY SINE Alu -3 308 1 538 247 67 6 chr3 86345992 86346170 -131690988 + LTR33A LTR ERVL 335 523 0 767 124 0 0 chr3 86346961 86347074 -131690084 - AluSg/x SINE Alu -1 309 197 2104 216 14 49 chr3 86347256 86347712 -131689446 + LTR31 LTR ERV1 113 551 -68 2360 102 0 0 chr3 86347712 86348016 -131689142 + AluSc SINE Alu 1 304 -5 2104 216 14 49 chr3 86348016 86348069 -131689089 + LTR31 LTR ERV1 551 604 -15 415 269 42 0 chr3 86348356 86348475 -131688683 - MER103 DNA DNA -40 126 3 180 111 0 0 chr3 86349841 86349868 -131687290 + (CATA)n Simple_repeat Simple_repeat 1 27 0 228 35 0 0 chr3 86351001 86351030 -131686128 + (TG)n Simple_repeat Simple_repeat 2 30 0 2162 101 0 7 chr3 86351926 86352245 -131684913 - AluSx SINE Alu 0 327 11 910 209 11 6 chr3 86352381 86352558 -131684600 + MER45A DNA AcHobo 1 178 0 284 316 11 0 chr3 86352708 86352803 -131684355 + MER69 DNA AcHobo 1 96 -1130 1088 299 33 42 chr3 86352856 86353335 -131683823 + MER20B DNA MER1_type 33 507 -276 1028 203 71 5 chr3 86353453 86353650 -131683508 + MER58C DNA MER1_type 1 210 -5 259 154 0 19 chr3 86353691 86353743 -131683415 + MER20B DNA MER1_type 596 646 -137 2022 140 0 0 chr3 86353783 86354075 -131683083 - AluSx SINE Alu -7 305 14 502 212 259 65 chr3 86354675 86355000 -131682158 - MLT1G1 LTR MaLR -1 589 185 339 65 0 0 chr3 86355002 86355048 -131682110 + (GA)n Simple_repeat Simple_repeat 1 46 0 675 230 45 83 chr3 86355082 86355328 -131681830 - MLT1G1 LTR MaLR -369 206 6 1964 125 24 7 chr3 86355423 86355703 -131681455 + AluSc SINE Alu 1 288 -21 321 26 0 0 chr3 86355703 86355741 -131681417 + (CCA)n Simple_repeat Simple_repeat 1 38 0 293 290 40 0 chr3 86357256 86357356 -131679802 - MIR3 SINE MIR -49 159 56 227 241 89 38 chr3 86357471 86357550 -131679608 + MIR SINE MIR 39 121 -87 338 212 59 68 chr3 86358659 86358777 -131678381 - MER5A DNA MER1_type -37 152 36 372 228 102 31 chr3 86358996 86359198 -131677960 - MLT1G1 LTR MaLR 0 555 302 656 200 7 0 chr3 86359217 86359362 -131677796 + (TCTA)n Simple_repeat Simple_repeat 1 146 0 760 252 55 19 chr3 86359374 86359684 -131677474 - MLT1G1 LTR MaLR -303 287 1 229 238 25 25 chr3 86361519 86361599 -131675559 + MER116 DNA Mariner 1 80 0 291 325 92 6 chr3 86361778 86361941 -131675217 + MIR SINE MIR 1 177 -85 2649 92 10 51 chr3 86362097 86362488 -131674670 - THE1C LTR MaLR 0 375 1 265 322 91 8 chr3 86362744 86362865 -131674293 + L2 LINE L2 3137 3267 -5 248 267 34 62 chr3 86363073 86363171 -131673987 + MIR SINE MIR 18 112 -150 2363 74 0 39 chr3 86363171 86363483 -131673675 - AluY SINE Alu -11 300 1 248 267 34 62 chr3 86363483 86363530 -131673628 + MIR SINE MIR 112 159 -103 1996 148 12 96 chr3 86363534 86363960 -131673198 + MLT1B LTR MaLR 1 390 0 264 224 119 144 chr3 86364006 86364283 -131672875 - MLT1I LTR MaLR -49 360 91 187 235 29 108 chr3 86364369 86364432 -131672726 + MIR SINE MIR 154 208 -54 2458 88 0 3 chr3 86364432 86364738 -131672420 + AluSc SINE Alu 1 305 -4 187 235 29 108 chr3 86364738 86364776 -131672382 + MIR SINE MIR 208 247 -15 210 118 0 0 chr3 86364776 86364810 -131672348 + (TTG)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr3 86366196 86366218 -131670940 + AT_rich Low_complexity Low_complexity 1 22 0 267 291 75 17 chr3 86366241 86366441 -131670717 - MIR SINE MIR -2 260 8 356 270 37 43 chr3 86366549 86366712 -131670446 - L2 LINE L2 -49 3264 3103 461 278 37 12 chr3 86367297 86367459 -131669699 + MER117 DNA MER1_type 2 167 -30 347 48 12 0 chr3 86367606 86367656 -131669502 + (TCCCC)n Simple_repeat Simple_repeat 1 50 0 * 531 244 0 16 chr3 86367650 86367903 -131669255 + CT-rich Low_complexity Low_complexity 1 249 0 373 326 14 7 chr3 86367940 86368087 -131669071 + MIR SINE MIR 20 167 -95 775 256 130 10 chr3 86368127 86368526 -131668632 - MER113 DNA MER1_type? -3 518 72 2298 124 0 3 chr3 86368789 86369096 -131668062 + AluSx SINE Alu 1 306 -6 269 283 61 10 chr3 86369223 86369322 -131667836 + L2 LINE L2 3121 3224 -48 2321 218 13 73 chr3 86370492 86370599 -131666559 - L1MD3 LINE L1 0 7995 7883 2291 117 0 0 chr3 86370599 86370898 -131666260 - AluSx SINE Alu -13 299 1 2321 218 13 73 chr3 86370898 86370916 -131666242 - L1MD3 LINE L1 -112 7883 7865 1411 160 9 121 chr3 86370916 86371247 -131665911 + AluJo SINE Alu 1 294 -8 2321 218 13 73 chr3 86371247 86371267 -131665891 - L1MD3 LINE L1 -130 7865 7845 1825 146 7 4 chr3 86371267 86371548 -131665610 + AluSx SINE Alu 21 302 -10 2321 218 13 73 chr3 86371548 86372030 -131665128 - L1MD3 LINE L1 -150 7845 7404 872 153 64 6 chr3 86372624 86372781 -131664377 + LTR50 LTR ERVL 1 166 -629 1554 229 248 10 chr3 86372800 86373406 -131663752 + LTR50 LTR ERVL 1 750 -45 2316 90 0 10 chr3 86373414 86373713 -131663445 + AluSc SINE Alu 1 296 -13 2069 128 3 0 chr3 86374152 86374441 -131662717 + AluSg SINE Alu 3 292 -18 240 35 0 0 chr3 86375412 86375441 -131661717 + (CAA)n Simple_repeat Simple_repeat 2 30 0 806 117 8 0 chr3 86376429 86376549 -131660609 + L1P4 LINE L1 5592 5712 -454 224 39 0 0 chr3 86376824 86376850 -131660308 + (T)n Simple_repeat Simple_repeat 1 26 0 352 314 117 15 chr3 86377169 86377443 -131659715 - MLT1L LTR MaLR -8 607 306 240 246 0 0 chr3 86377462 86377531 -131659627 + CT-rich Low_complexity Low_complexity 2 70 0 345 241 0 48 chr3 86377567 86377754 -131659404 + CT-rich Low_complexity Low_complexity 2 179 0 228 67 0 0 chr3 86377797 86377827 -131659331 + (C)n Simple_repeat Simple_repeat 1 30 0 23 0 0 0 chr3 86377827 86377850 -131659308 + GC_rich Low_complexity Low_complexity 1 23 0 208 247 52 32 chr3 86377867 86378021 -131659137 + (TCCCG)n Simple_repeat Simple_repeat 3 159 0 * 332 258 20 40 chr3 86377923 86378074 -131659084 + C-rich Low_complexity Low_complexity 5 152 0 253 169 34 56 chr3 86378255 86378344 -131658814 + G-rich Low_complexity Low_complexity 2 88 0 541 128 40 0 chr3 86378373 86378498 -131658660 + CT-rich Low_complexity Low_complexity 1 130 0 268 194 32 97 chr3 86378556 86378649 -131658509 - LTR67 LTR ERVL -389 168 82 475 222 98 20 chr3 86381036 86381189 -131655969 - MIR SINE MIR -6 256 92 2443 70 0 3 chr3 86381297 86381595 -131655563 - AluY SINE Alu -14 297 1 205 233 0 55 chr3 86381699 86381772 -131655386 - L2 LINE L2 -62 3251 3183 2403 81 0 0 chr3 86382333 86382630 -131654528 - AluY SINE Alu -12 299 3 2137 145 0 0 chr3 86382632 86382935 -131654223 - AluSx SINE Alu -9 303 1 284 118 0 20 chr3 86382978 86383029 -131654129 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 316 159 0 4 chr3 86383187 86383249 -131653909 - Alu SINE Alu -252 47 1 284 118 0 20 chr3 86383277 86383328 -131653830 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 197 196 20 20 chr3 86383381 86383432 -131653726 - MIR SINE MIR -5 257 207 375 241 154 46 chr3 86383452 86383647 -131653511 - MER113 DNA MER1_type? -138 383 168 318 287 99 33 chr3 86383832 86384057 -131653101 + MIR SINE MIR 19 260 -2 183 312 0 52 chr3 86384328 86384405 -131652753 - L2 LINE L2 -250 3022 2950 220 299 104 28 chr3 86385465 86385609 -131651549 + L2 LINE L2 3159 3313 0 411 210 10 20 chr3 86385965 86386065 -131651093 + MIR SINE MIR 92 190 -72 345 281 16 8 chr3 86387095 86387223 -131649935 + (TA)n Simple_repeat Simple_repeat 2 130 0 2293 109 0 10 chr3 86387262 86387574 -131649584 + AluSc SINE Alu 1 309 0 473 252 84 7 chr3 86387827 86387995 -131649163 + L1MB8 LINE L1 91 498 -6357 2296 194 60 11 chr3 86388158 86388606 -131648552 - MLT2B1 LTR ERVL -50 470 1 2247 226 61 93 chr3 86388742 86389749 -131647409 + L1MB8 LINE L1 945 1918 -4937 3935 81 15 42 chr3 86389761 86389950 -131647208 - L1MA1 LINE L1 0 6302 6110 1560 224 3 0 chr3 86389950 86390249 -131646909 - AluJb SINE Alu -12 300 1 3935 81 15 42 chr3 86390249 86390661 -131646497 - L1MA1 LINE L1 -192 6110 5717 5773 159 8 23 chr3 86390661 86391239 -131645919 - L1 LINE L1 -1608 4538 3953 2450 72 0 13 chr3 86391239 86391545 -131645613 - AluY SINE Alu -9 302 1 5773 159 8 23 chr3 86391545 86391818 -131645340 - L1 LINE L1 -2193 3953 3677 2120 68 17 41 chr3 86391818 86392146 -131645012 - AluSx SINE Alu 0 321 1 5773 159 8 23 chr3 86392146 86392358 -131644800 - L1 LINE L1 -2469 3677 3486 792 111 0 9 chr3 86392358 86392466 -131644692 - U6 snRNA snRNA 0 107 1 5773 159 8 23 chr3 86392466 86392478 -131644680 - L1 LINE L1 -2660 3486 3475 1336 275 104 45 chr3 86392502 86393398 -131643760 + L1MB8 LINE L1 2104 3052 -4086 2852 200 81 23 chr3 86393412 86393725 -131643433 + L1MB8 LINE L1 5890 6183 -806 2265 77 0 11 chr3 86393725 86394051 -131643107 + AluY SINE Alu 1 323 0 2852 200 81 23 chr3 86394051 86394667 -131642491 + L1MB8 LINE L1 6183 6874 -115 23 54 0 0 chr3 86394696 86394733 -131642425 + AT_rich Low_complexity Low_complexity 1 37 0 273 322 119 22 chr3 86395816 86396043 -131641115 + L2 LINE L2 2632 2880 -434 270 0 0 0 chr3 86396111 86396141 -131641017 + (CA)n Simple_repeat Simple_repeat 2 31 0 609 261 20 39 chr3 86396273 86396476 -131640682 + MLT1J LTR MaLR 5 203 -308 362 296 37 37 chr3 86396562 86396724 -131640434 + MLT1J LTR MaLR 258 419 -92 1126 140 0 0 chr3 86396747 86396918 -131640240 - FRAM SINE Alu -6 170 1 226 326 56 0 chr3 86397037 86397126 -131640032 + L2 LINE L2 3218 3311 -2 1006 208 0 31 chr3 86397268 86397494 -131639664 - MER20 DNA MER1_type 0 219 1 438 20 0 0 chr3 86398368 86398419 -131638739 + (TG)n Simple_repeat Simple_repeat 1 51 0 2400 96 0 3 chr3 86399233 86399546 -131637612 + AluSx SINE Alu 1 312 0 224 213 43 0 chr3 86399748 86399795 -131637363 - MER91A DNA MER1_type -28 168 120 895 235 81 13 chr3 86399965 86400199 -131636959 - MIR SINE MIR -10 252 3 477 271 171 10 chr3 86400319 86400518 -131636640 - MIR SINE MIR -28 234 4 365 321 81 8 chr3 86400881 86401127 -131636031 - L1ME4a LINE L1 -274 5847 5584 2050 246 69 88 chr3 86401409 86401615 -131635543 - L1ME LINE L1 -4512 1568 1360 288 77 0 0 chr3 86401615 86401654 -131635504 + (TG)n Simple_repeat Simple_repeat 2 40 0 2050 246 69 88 chr3 86401654 86402161 -131634997 - L1ME LINE L1 -4720 1360 845 1800 142 69 7 chr3 86402161 86402450 -131634708 - AluSx SINE Alu -5 307 1 2050 246 69 88 chr3 86402450 86402518 -131634640 - L1ME LINE L1 -5235 845 777 1721 176 17 0 chr3 86402518 86402813 -131634345 - AluJo SINE Alu -10 302 3 2050 246 69 88 chr3 86402813 86403128 -131634030 - L1ME LINE L1 -5303 777 508 2318 96 10 0 chr3 86403128 86403429 -131633729 + AluSg SINE Alu 1 304 -6 2050 246 69 88 chr3 86403429 86403743 -131633415 - L1ME LINE L1 -5572 508 190 1039 145 6 13 chr3 86403745 86403904 -131633254 - AluJo SINE Alu -68 244 87 596 242 16 33 chr3 86403904 86404086 -131633072 - L1ME LINE L1 -5889 181 3 220 254 95 0 chr3 86404252 86404315 -131632843 + L2 LINE L2 3241 3309 -4 347 301 22 15 chr3 86406026 86406162 -131630996 + MER5B DNA MER1_type 18 154 -24 332 192 48 67 chr3 86406508 86406612 -131630546 + MIR SINE MIR 70 171 -91 1945 129 33 36 chr3 86406788 86407090 -131630068 + AluSx SINE Alu 1 301 -11 1011 173 22 0 chr3 86407296 86407481 -131629677 - MER5A DNA MER1_type 0 189 1 644 238 17 33 chr3 86407523 86407704 -131629454 + MER5B DNA MER1_type 1 178 0 405 264 121 99 chr3 86407721 86408381 -131628777 + L2 LINE L2 2636 3313 0 1531 166 16 80 chr3 86409289 86409602 -131627556 + AluJb SINE Alu 5 297 -15 394 202 71 20 chr3 86410209 86410308 -131626850 - Charlie5 DNA MER1_type -2507 105 2 267 310 0 0 chr3 86411324 86411395 -131625763 + Charlie8 DNA MER1_type 1354 1424 -993 2108 116 3 0 chr3 86412188 86412480 -131624678 + AluSq SINE Alu 16 308 -5 2011 141 3 10 chr3 86412916 86413228 -131623930 - AluSx SINE Alu -2 310 1 321 225 36 101 chr3 86413407 86413545 -131623613 - MIR SINE MIR -10 252 124 567 231 17 0 chr3 86414479 86414596 -131622562 - MER94 DNA DNA -15 119 1 277 277 24 12 chr3 86414601 86414684 -131622474 + MIR SINE MIR 15 98 -164 899 106 25 31 chr3 86414689 86414849 -131622309 - L1MA4 LINE L1 -3 6297 6139 11620 153 18 3 chr3 86414854 86417686 -131619472 + L1PA14 LINE L1 3274 6156 -5 4778 147 18 28 chr3 86417705 86418014 -131619144 - L1MA4 LINE L1 -163 6137 5827 1332 181 109 8 chr3 86418014 86418279 -131618879 - AluJb SINE Alu -20 292 1 4778 147 18 28 chr3 86418279 86419125 -131618033 - L1MA4 LINE L1 -473 5827 4921 1885 123 63 0 chr3 86419125 86419410 -131617748 - AluSx SINE Alu -9 303 1 4778 147 18 28 chr3 86419410 86419466 -131617692 - L1MA4 LINE L1 -1379 4921 4866 417 242 0 0 chr3 86419475 86419574 -131617584 + MIR SINE MIR 109 207 -55 2783 132 281 32 chr3 86419575 86420857 -131616301 + pTR5 LTR ERV1 743 2606 0 350 145 0 32 chr3 86420871 86420933 -131616225 + MER3 DNA MER1_type 145 204 -5 481 358 53 4 chr3 86422041 86422267 -131614891 - MIR SINE MIR -19 243 7 2442 67 0 16 chr3 86422306 86422621 -131614537 - AluY SINE Alu 0 311 2 200 239 0 0 chr3 86422629 86422675 -131614483 - MIR SINE MIR -23 239 194 2351 82 0 16 chr3 86422913 86423229 -131613929 - AluY SINE Alu 0 311 1 408 263 24 123 chr3 86423237 86423488 -131613670 - MIR SINE MIR -23 239 14 2056 109 21 0 chr3 86423718 86424003 -131613155 - AluSx SINE Alu -21 291 1 382 277 34 0 chr3 86424163 86424282 -131612876 - MER5C DNA MER1_type -200 124 2 236 313 107 0 chr3 86424373 86424485 -131612673 + MIR3 SINE MIR 81 204 -4 355 198 215 25 chr3 86424981 86425102 -131612056 + MER5A DNA MER1_type 12 155 -34 252 313 20 20 chr3 86425318 86425417 -131611741 - L2 LINE L2 -169 3103 3005 1004 252 0 13 chr3 86425550 86425776 -131611382 + MER58A DNA MER1_type 1 223 -1 878 217 16 0 chr3 86425786 86425970 -131611188 + MER5A DNA MER1_type 2 188 -1 288 294 107 32 chr3 86425986 86426173 -131610985 + L2 LINE L2 2920 3120 -193 2578 151 36 40 chr3 86426205 86426558 -131610600 - L1MA7 LINE L1 -5 6286 5934 1614 137 122 32 chr3 86426558 86426902 -131610256 - THE1C LTR MaLR 0 375 1 2578 151 36 40 chr3 86426902 86427077 -131610081 - L1MA7 LINE L1 -357 5934 5760 371 203 0 0 chr3 86427077 86427151 -131610007 + MIR SINE MIR 123 196 -66 1222 103 29 0 chr3 86427305 86427479 -131609679 - L1PB3 LINE L1 -6 6148 5970 370 260 185 6 chr3 86427636 86427809 -131609349 - MIR SINE MIR -42 220 17 640 271 7 0 chr3 86429157 86429312 -131607846 + MER117 DNA MER1_type 6 161 -36 1175 223 5 5 chr3 86429534 86429758 -131607400 - MER58A DNA MER1_type 0 224 1 182 319 53 0 chr3 86430495 86430589 -131606569 - MIR SINE MIR 0 262 164 416 268 9 108 chr3 86430848 86430918 -131606240 + MER102b DNA MER1_type 149 224 -1204 638 226 108 59 chr3 86430918 86431122 -131606036 - MER58C DNA MER1_type -1 214 1 416 268 9 108 chr3 86431122 86431264 -131605894 + MER102b DNA MER1_type 224 340 -1 272 279 35 0 chr3 86431459 86431545 -131605613 + MIR SINE MIR 57 145 -117 314 221 35 23 chr3 86432364 86432450 -131604708 - L1ME4a LINE L1 -43 6078 5992 2444 83 0 6 chr3 86432613 86432926 -131604232 + AluY SINE Alu 1 311 0 333 230 263 7 chr3 86433339 86433491 -131603667 + L2 LINE L2 3118 3308 -5 2289 121 0 0 chr3 86433722 86434028 -131603130 - AluSx SINE Alu -5 307 2 940 186 8 103 chr3 86434489 86434566 -131602592 - MER58A DNA MER1_type -2201 219 136 997 164 116 5 chr3 86434566 86434755 -131602403 + MER6B DNA MER2_type 1 210 0 940 186 8 103 chr3 86434755 86434846 -131602312 - MER58A DNA MER1_type -2284 136 78 1953 146 3 17 chr3 86434846 86435141 -131602017 - AluSx SINE Alu -21 291 1 940 186 8 103 chr3 86435141 86435213 -131601945 - MER58A DNA MER1_type -2342 78 1 322 342 9 9 chr3 86435213 86435327 -131601831 + MIR SINE MIR 2 115 -147 564 314 50 65 chr3 86436561 86437019 -131600139 - MLT1K LTR MaLR -10 578 128 220 350 51 29 chr3 86438274 86438411 -131598747 + MIR3 SINE MIR 1 140 -68 801 323 49 49 chr3 86440993 86441423 -131595735 - L2 LINE L2 -2 3311 2882 903 240 37 20 chr3 86441455 86441701 -131595457 + MIR SINE MIR 8 257 -5 403 159 45 45 chr3 86442137 86442225 -131594933 - L1MB3 LINE L1 -8 6175 6088 388 290 49 12 chr3 86442276 86442438 -131594720 - L1MC4a LINE L1 -1928 5880 5713 445 295 90 0 chr3 86444193 86444359 -131592799 - MIR SINE MIR 0 262 82 1381 191 64 30 chr3 86444391 86444501 -131592657 + MER58B DNA MER1_type 1 106 -2314 2342 77 0 10 chr3 86444501 86444821 -131592337 + AluY SINE Alu 1 311 0 1381 191 64 30 chr3 86444821 86445039 -131592119 + MER58B DNA MER1_type 106 340 -1 379 288 122 7 chr3 86445078 86445217 -131591941 - MIR SINE MIR 0 262 108 300 250 118 22 chr3 86445248 86445385 -131591773 - MIR SINE MIR -59 149 23 1786 107 119 8 chr3 86445400 86445661 -131591497 - AluSg1 SINE Alu -19 290 1 961 250 9 5 chr3 86446825 86447045 -131590113 + MER58A DNA MER1_type 4 224 0 232 276 35 0 chr3 86447073 86447160 -131589998 + GA-rich Low_complexity Low_complexity 3 92 0 568 196 72 7 chr3 86447558 86447696 -131589462 + MER103 DNA DNA 11 157 -9 2393 78 0 0 chr3 86448462 86448757 -131588401 - AluY SINE Alu -16 295 1 1435 99 5 0 chr3 86448980 86449181 -131587977 - L1PB1 LINE L1 -5 6146 5945 578 301 104 56 chr3 86449185 86449360 -131587798 + L2 LINE L2 2458 2623 -690 1081 166 217 103 chr3 86449360 86449527 -131587631 + MLT1B LTR MaLR 1 148 -242 2135 122 3 28 chr3 86449527 86449664 -131587494 + AluSx SINE Alu 1 140 -172 2200 114 13 3 chr3 86449664 86449971 -131587187 + AluSg SINE Alu 1 310 0 2135 122 3 28 chr3 86449971 86450153 -131587005 + AluSx SINE Alu 140 312 0 1081 166 217 103 chr3 86450153 86450335 -131586823 + MLT1B LTR MaLR 148 390 0 578 301 104 56 chr3 86450335 86450970 -131586188 + L2 LINE L2 2623 3304 -9 771 298 105 73 chr3 86451118 86451396 -131585762 + HAL1 LINE L1 22 290 -2217 2536 57 0 0 chr3 86451396 86451693 -131585465 - AluY SINE Alu -14 297 1 771 298 105 73 chr3 86451693 86452138 -131585020 + HAL1 LINE L1 290 768 -1739 1295 179 9 0 chr3 86452223 86452441 -131584717 + MER7A DNA MER2_type 1 218 -128 2151 79 20 16 chr3 86452548 86452851 -131584307 + AluSc SINE Alu 1 304 -5 260 288 38 0 chr3 86452856 86452936 -131584222 + MER96B DNA MER1_type? 334 416 -1 619 213 178 10 chr3 86452988 86453190 -131583968 - MIR SINE MIR -15 247 12 257 284 42 21 chr3 86453965 86454060 -131583098 + MER5A DNA MER1_type 77 184 -5 280 273 45 18 chr3 86454105 86454215 -131582943 - MIR SINE MIR -148 114 2 356 280 131 39 chr3 86454336 86454618 -131582540 - LTR16C LTR ERVL -9 482 175 354 98 0 0 chr3 86454632 86454683 -131582475 + (CA)n Simple_repeat Simple_repeat 1 51 0 1090 310 117 26 chr3 86455357 86456388 -131580770 + L2 LINE L2 1138 2262 -1052 22 0 0 0 chr3 86457653 86457675 -131579483 + AT_rich Low_complexity Low_complexity 1 22 0 2316 112 0 0 chr3 86457933 86458236 -131578922 + AluSq SINE Alu 1 303 -10 2535 139 81 44 chr3 86458655 86459386 -131577772 + L1MB4 LINE L1 5060 5825 -355 11306 53 0 4 chr3 86459388 86460749 -131576409 + L1P LINE L1 1 1355 -4791 1421 167 59 46 chr3 86460931 86461236 -131575922 - AluJb SINE Alu -3 309 1 334 327 135 5 chr3 86462751 86462959 -131574199 - MIR SINE MIR -13 249 15 6824 173 36 19 chr3 86463349 86465163 -131571995 - L1PA16 LINE L1 -9 6157 4294 2236 124 0 13 chr3 86465163 86465478 -131571680 + AluSx SINE Alu 1 311 -1 6824 173 36 19 chr3 86465478 86466033 -131571125 - L1PA16 LINE L1 -1872 4294 3750 316 326 54 15 chr3 86466036 86466274 -131570884 - L1MC4a LINE L1 -264 5857 5619 376 349 62 78 chr3 86466420 86466778 -131570380 + L2 LINE L2 2916 3267 -5 185 246 15 0 chr3 86466831 86466896 -131570262 + GA-rich Low_complexity Low_complexity 4 69 0 216 294 0 0 chr3 86466935 86466986 -131570172 + GA-rich Low_complexity Low_complexity 1 51 0 2333 64 0 51 chr3 86467034 86467346 -131569812 + AluY SINE Alu 1 296 -15 195 226 0 0 chr3 86467346 86467389 -131569769 + GA-rich Low_complexity Low_complexity 8 53 0 424 265 0 59 chr3 86467505 86467641 -131569517 - L2 LINE L2 -15 3298 3171 394 94 0 0 chr3 86467720 86467773 -131569385 + MADE1 DNA Mariner 28 80 0 249 264 188 7 chr3 86467801 86467945 -131569213 - L2 LINE L2 -248 3065 2896 2177 88 10 23 chr3 86468008 86468314 -131568844 + AluSx SINE Alu 3 304 -8 1830 190 55 55 chr3 86468370 86468827 -131568331 - MLT1C LTR MaLR -8 459 3 31738 32 3 1 chr3 86470355 86474910 -131562248 + L1PA4 LINE L1 1593 6152 -3 1025 162 51 120 chr3 86474909 86475267 -131561891 + L1MB4 LINE L1 5835 6167 -13 * 235 299 159 19 chr3 86476260 86476367 -131560791 - L2 LINE L2 -14 3258 3137 672 235 22 22 chr3 86476466 86476649 -131560509 + MER5A DNA MER1_type 6 188 -1 304 286 107 45 chr3 86476755 86476933 -131560225 - L2 LINE L2 -206 3107 2919 2049 148 0 0 chr3 86477726 86478016 -131559142 + AluSx SINE Alu 1 290 -22 1492 219 68 32 chr3 86478039 86478408 -131558750 - MER58D DNA MER1_type -4 382 1 317 146 0 0 chr3 86478418 86478466 -131558692 - MLT2D LTR ERVL 0 414 367 217 182 15 30 chr3 86478478 86478544 -131558614 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 270 269 68 68 chr3 86478564 86478856 -131558302 - MLT2D LTR ERVL -55 465 170 2202 80 7 28 chr3 86478883 86479206 -131557952 + AluSp SINE Alu 1 317 0 2272 103 0 3 chr3 86479206 86479506 -131557652 + AluSc SINE Alu 1 299 -10 2296 184 32 11 chr3 86479714 86480154 -131557004 + MLT1C LTR MaLR 1 449 -18 233 224 80 80 chr3 86480522 86480647 -131556511 - MIR3 SINE MIR -79 129 5 297 286 48 24 chr3 86481449 86481533 -131555625 - L2 LINE L2 -1 3271 3186 254 123 46 62 chr3 86481549 86481614 -131555544 - LTR50 LTR ERVL -3 792 729 191 298 0 0 chr3 86482744 86482791 -131554367 - MIR SINE MIR -7 255 209 27 0 0 0 chr3 86482829 86482856 -131554302 + AT_rich Low_complexity Low_complexity 1 27 0 466 293 66 66 chr3 86482952 86482994 -131554164 - L1MC4a LINE L1 -1834 5974 5933 1993 132 3 23 chr3 86482994 86483304 -131553854 - AluSc SINE Alu -5 304 1 466 293 66 66 chr3 86483304 86483626 -131553532 - L1MC4a LINE L1 -1874 5934 5610 273 222 0 0 chr3 86483633 86483696 -131553462 + CT-rich Low_complexity Low_complexity 1 63 0 1943 116 14 0 chr3 86483708 86483983 -131553175 - AluSq SINE Alu -34 279 1 496 239 188 17 chr3 86484651 86484827 -131552331 - MIR SINE MIR -55 207 2 2548 161 56 11 chr3 86486317 86486764 -131550394 - MLT1C LTR MaLR 0 467 1 430 259 146 72 chr3 86487242 86487316 -131549842 - L1ME4a LINE L1 -48 6073 6006 2378 92 7 0 chr3 86487316 86487622 -131549536 + AluSq SINE Alu 1 308 -5 430 259 146 72 chr3 86487622 86487979 -131549179 - L1ME4a LINE L1 -115 6006 5610 657 270 45 40 chr3 86489345 86489567 -131547591 - MIR SINE MIR -21 241 19 382 309 0 0 chr3 86489771 86489881 -131547277 - MIR SINE MIR -14 248 139 2352 101 3 0 chr3 86489950 86490258 -131546900 + AluSp SINE Alu 1 309 -4 352 296 35 35 chr3 86490260 86490375 -131546783 + L2 LINE L2 3158 3272 0 251 241 0 0 chr3 86490379 86490433 -131546725 - MIR SINE MIR -121 141 88 2012 157 10 57 chr3 86490607 86490996 -131546162 - MLT1B LTR MaLR -16 374 4 1152 216 9 9 chr3 86491533 86491751 -131545407 - MER20 DNA MER1_type -1 218 1 187 245 151 47 chr3 86491751 86491851 -131545307 - MIR SINE MIR -47 215 105 2208 122 0 0 chr3 86491985 86492281 -131544877 - AluSg SINE Alu -14 296 1 421 244 17 35 chr3 86492329 86492444 -131544714 - L2 LINE L2 -1 3312 3200 23 33 0 0 chr3 86493688 86493718 -131543440 + AT_rich Low_complexity Low_complexity 1 30 0 941 253 50 56 chr3 86493879 86494219 -131542939 - MLT1J LTR MaLR -8 503 166 5883 130 19 47 chr3 86494230 86495059 -131542099 - L1PA13 LINE L1 -4 6159 5380 1530 209 0 34 chr3 86495059 86495380 -131541778 - AluSg SINE Alu 0 310 1 5883 130 19 47 chr3 86495380 86495720 -131541438 - L1PA13 LINE L1 -783 5380 5032 1395 149 4 0 chr3 86495820 86496055 -131541103 + L1P LINE L1 4475 4710 -1436 585 242 15 15 chr3 86496062 86496194 -131540964 - MLT1J LTR MaLR -334 177 46 309 26 0 0 chr3 86497089 86497127 -131540031 + (TG)n Simple_repeat Simple_repeat 2 39 0 22 70 0 0 chr3 86498256 86498299 -131538859 + AT_rich Low_complexity Low_complexity 1 43 0 891 231 100 51 chr3 86499324 86499635 -131537523 + MLT1I LTR MaLR 70 395 -14 1016 186 88 15 chr3 86499792 86500066 -131537092 + MER33 DNA MER1_type 1 294 -30 655 199 51 6 chr3 86500184 86500340 -131536818 + Charlie5 DNA MER1_type 2462 2624 0 241 280 172 0 chr3 86500399 86500492 -131536666 + MIR SINE MIR 84 192 -70 1874 159 49 27 chr3 86501302 86501667 -131535491 + THE1C LTR MaLR 1 373 -2 1504 265 47 19 chr3 86501667 86502089 -131535069 - MLT1J LTR MaLR -71 440 7 239 209 174 12 chr3 86502142 86502228 -131534930 - MIR SINE MIR -69 193 94 284 271 101 80 chr3 86502264 86502452 -131534706 - MIR SINE MIR -47 215 24 590 264 7 0 chr3 86502485 86502629 -131534529 - MLT1E2 LTR MaLR -4 622 478 * 704 146 40 81 chr3 86502627 86502801 -131534357 - MLT1E2 LTR MaLR -345 160 1 377 196 42 26 chr3 86502801 86502962 -131534196 + MER112 DNA MER1_type 22 220 -40 243 336 27 40 chr3 86502985 86503134 -131534024 + L2 LINE L2 2553 2699 -615 411 217 38 38 chr3 86503892 86503998 -131533160 + MIR SINE MIR 2 107 -155 1101 270 95 52 chr3 86504458 86504830 -131532328 + L2 LINE L2 2783 3182 -131 1466 121 5 14 chr3 86504830 86505045 -131532113 - L1PA11 LINE L1 0 6174 5962 1101 270 95 52 chr3 86505045 86505183 -131531975 + L2 LINE L2 3182 3313 0 284 264 57 19 chr3 86505191 86505297 -131531861 - L2 LINE L2 -4 3309 3200 1325 199 70 7 chr3 86505931 86506218 -131530940 + MLT1F LTR MaLR 238 542 0 446 321 21 21 chr3 86506412 86506599 -131530559 - MIR SINE MIR -12 250 64 530 252 155 0 chr3 86506687 86506842 -131530316 - MER5A DNA MER1_type 0 189 11 252 175 83 158 chr3 86509898 86510018 -131527140 - L2 LINE L2 -21 3292 3182 408 193 12 12 chr3 86510023 86510106 -131527052 - Charlie4a DNA MER1_type -4 504 422 1017 174 22 0 chr3 86510112 86510296 -131526862 - L1MA9 LINE L1 -219 6093 5906 * 1040 134 119 15 chr3 86510289 86510462 -131526696 + L1MA9 LINE L1 6085 6283 -29 2509 151 31 21 chr3 86510462 86510880 -131526278 - MSTA LTR MaLR -2 426 5 1040 134 119 15 chr3 86510880 86510907 -131526251 + L1MA9 LINE L1 6283 6306 -6 1080 241 140 3 chr3 86510910 86511275 -131525883 - Charlie4a DNA MER1_type -84 424 10 290 250 38 0 chr3 86511928 86512008 -131525150 + MER91A DNA MER1_type 1 83 -113 261 218 35 11 chr3 86512310 86512397 -131524761 + MER113 DNA MER1_type? 4 92 -429 966 267 31 0 chr3 86512513 86512801 -131524357 + L1MC1 LINE L1 5013 5309 -837 3780 134 36 8 chr3 86512822 86513590 -131523568 + L1MC1 LINE L1 5470 6333 0 3262 107 0 46 chr3 86513591 86513954 -131523204 - L1PB1 LINE L1 -4 6147 5812 378 0 0 0 chr3 86513954 86513996 -131523162 + (CA)n Simple_repeat Simple_repeat 2 43 0 3262 107 0 46 chr3 86513996 86514128 -131523030 - L1PB1 LINE L1 -339 5812 5675 1036 263 17 11 chr3 86514164 86514485 -131522673 + L1MC4a LINE L1 6194 7808 0 537 270 67 49 chr3 86514684 86514951 -131522207 + MER113 DNA MER1_type? 186 457 -64 33371 61 2 2 chr3 86515158 86521295 -131515863 - L1PA5 LINE L1 -3 6151 11 904 139 17 101 chr3 86521611 86521848 -131515310 - MER20 DNA MER1_type -2 217 1 349 302 43 0 chr3 86522278 86522417 -131514741 - MIR SINE MIR -35 227 83 778 246 109 52 chr3 86522536 86522817 -131514341 - MLT1C LTR MaLR -34 433 169 2134 117 0 0 chr3 86522817 86523098 -131514060 - AluSg SINE Alu -29 281 1 778 246 109 52 chr3 86523098 86523179 -131513979 - MLT1C LTR MaLR -298 169 94 2300 81 10 13 chr3 86523179 86523489 -131513669 - AluSc SINE Alu 0 309 1 778 246 109 52 chr3 86523489 86523585 -131513573 - MLT1C LTR MaLR -373 94 1 216 267 27 13 chr3 86524407 86524482 -131512676 + MIR SINE MIR 79 154 -108 22 0 0 0 chr3 86524786 86524808 -131512350 + AT_rich Low_complexity Low_complexity 1 22 0 1927 260 57 41 chr3 86524858 86524913 -131512245 - HAL1 LINE L1 -105 2402 2349 2418 81 0 0 chr3 86524913 86525211 -131511947 - AluY SINE Alu -13 298 1 1927 260 57 41 chr3 86525211 86525912 -131511246 - HAL1 LINE L1 -158 2349 1634 290 91 0 0 chr3 86525918 86525962 -131511196 - AluSc SINE Alu -2 297 254 1544 271 32 45 chr3 86526977 86527509 -131509649 - ERVL LTR ERVL -439 5325 4801 2360 103 39 28 chr3 86528818 86529178 -131507980 - THE1B LTR MaLR 0 364 1 876 213 42 51 chr3 86529298 86529514 -131507644 - MER58A DNA MER1_type -10 214 1 1680 109 127 11 chr3 86529569 86529836 -131507322 + AluSg1 SINE Alu 1 298 -11 250 241 60 90 chr3 86530786 86530952 -131506206 - MIR SINE MIR -12 250 90 3463 18 0 5 chr3 86535098 86535495 -131501663 + L1PA2 LINE L1 5760 6154 -1 1116 170 163 0 chr3 86536450 86536727 -131500431 + MER33 DNA MER1_type 1 322 -2 258 346 102 57 chr3 86538062 86538345 -131498813 - L2 LINE L2 -107 3165 2870 354 234 0 0 chr3 86538443 86538520 -131498638 - MIR SINE MIR -4 258 182 978 251 79 9 chr3 86539682 86539997 -131497161 + MER113 DNA MER1_type? 9 345 -176 373 281 106 0 chr3 86541102 86541262 -131495896 + MIR SINE MIR 74 250 -12 2578 56 0 10 chr3 86541396 86541700 -131495458 + AluY SINE Alu 1 301 -10 293 277 48 0 chr3 86545124 86545207 -131491951 + MER103 DNA DNA 4 90 -76 1032 230 60 52 chr3 86545627 86545996 -131491162 + MER113 DNA MER1_type? 1 372 -149 200 253 175 90 chr3 86546075 86546241 -131490917 + MER5A DNA MER1_type 10 189 0 1272 125 0 0 chr3 86547444 86547620 -131489538 + AluSg/x SINE Alu 137 312 0 535 288 44 14 chr3 86548331 86548408 -131488750 + L2 LINE L2 3019 3092 -221 1974 140 27 0 chr3 86548408 86548701 -131488457 - AluSx SINE Alu -11 301 1 535 288 44 14 chr3 86548701 86548851 -131488307 + L2 LINE L2 3092 3313 0 194 281 88 0 chr3 86549605 86549662 -131487496 - L2 LINE L2 -2 3311 3250 268 264 14 0 chr3 86551193 86551265 -131485893 - MER5C DNA MER1_type -200 124 52 240 35 0 0 chr3 86551272 86551301 -131485857 + (TAG)n Simple_repeat Simple_repeat 2 30 0 317 368 51 0 chr3 86552211 86552445 -131484713 + L2 LINE L2 2645 2890 -424 180 0 0 0 chr3 86553986 86554006 -131483152 + (CA)n Simple_repeat Simple_repeat 1 20 0 212 109 0 43 chr3 86604501 86604547 -131432611 + (GAAAA)n Simple_repeat Simple_repeat 4 47 0 341 274 75 9 chr3 86604869 86604975 -131432183 + L2 LINE L2 3193 3305 -8 285 220 0 0 chr3 86605404 86605454 -131431704 + LTR67 LTR ERVL 507 556 -1 1049 257 26 20 chr3 86605508 86605812 -131431346 - MLT1A1 LTR MaLR -2 363 58 235 136 45 0 chr3 86605865 86605909 -131431249 - MLT1A1 LTR MaLR -319 46 1 22 0 0 0 chr3 86606549 86606571 -131430587 + AT_rich Low_complexity Low_complexity 1 22 0 4920 196 39 58 chr3 86606884 86608266 -131428892 - L1M LINE L1 -769 5377 4047 35 0 0 0 chr3 86608285 86608320 -131428838 + AT_rich Low_complexity Low_complexity 1 35 0 423 299 24 18 chr3 86608330 86608494 -131428664 - L1 LINE L1 -2474 3496 3332 2015 180 36 59 chr3 86609389 86609867 -131427291 - MLT1C LTR MaLR 0 467 1 237 286 16 71 chr3 86610272 86610398 -131426760 + MIR SINE MIR 22 140 -122 29 0 0 0 chr3 86610705 86610734 -131426424 + AT_rich Low_complexity Low_complexity 1 29 0 726 241 40 82 chr3 86611095 86611702 -131425456 - L1 LINE L1 -4172 1799 714 1618 322 23 13 chr3 86612002 86612674 -131424484 - L1 LINE L1 -5379 512 2 308 299 126 5 chr3 86612944 86613151 -131424007 - L1M4 LINE L1 -3113 2921 2690 196 369 0 0 chr3 86613345 86613410 -131423748 + L2 LINE L2 1543 1607 -1707 536 126 11 11 chr3 86614155 86614250 -131422908 + L1PB1 LINE L1 6053 6147 -4 478 369 91 25 chr3 86614614 86615242 -131421916 - ERVL LTR ERVL -1784 3980 3312 594 193 9 9 chr3 86616958 86617072 -131420086 + MER5A DNA MER1_type 1 114 -75 523 217 28 56 chr3 86617150 86617293 -131419865 - MER91C DNA MER1_type 0 140 2 180 314 58 12 chr3 86617303 86617389 -131419769 - L2 LINE L2 -558 2756 2667 1296 189 8 12 chr3 86617474 86617723 -131419435 + AluJb SINE Alu 1 248 -64 221 361 43 19 chr3 86618038 86618246 -131418912 - L2 LINE L2 -1012 2302 2090 26 0 0 0 chr3 86618943 86618969 -131418189 + AT_rich Low_complexity Low_complexity 1 26 0 310 169 17 0 chr3 86619299 86619358 -131417800 + L1P3 LINE L1 5423 5482 -672 * 2171 254 54 28 chr3 86619357 86620679 -131416479 - L1M4 LINE L1 -4324 1711 379 410 288 75 25 chr3 86620800 86620960 -131416198 - L1M3a LINE L1 -5238 717 550 260 206 54 43 chr3 86621003 86621095 -131416063 - L1MC/D LINE L1 -554 5790 5698 355 378 7 0 chr3 86621653 86621788 -131415370 + MIR3 SINE MIR 67 202 -6 180 368 88 26 chr3 86621872 86621986 -131415172 + MIR SINE MIR 28 148 -60 907 185 94 71 chr3 86623946 86624286 -131412872 - MER69 DNA AcHobo -232 2294 1947 782 305 58 12 chr3 86624285 86624629 -131412529 - MER69 DNA AcHobo -838 388 29 * 5270 210 18 20 chr3 86625456 86627034 -131410124 + L1 LINE L1 2733 4307 -1839 1796 149 0 18 chr3 86627793 86628075 -131409083 + AluSx SINE Alu 11 287 -25 363 188 47 0 chr3 86628375 86628439 -131408719 + AluS SINE Alu 1 67 -236 315 301 96 34 chr3 86628487 86628633 -131408525 - MIR SINE MIR -12 250 96 1207 184 46 1 chr3 86628874 86629177 -131407981 - MER58B DNA MER1_type 0 341 4 196 154 51 0 chr3 86629276 86629315 -131407843 - L2 LINE L2 -8 3264 3224 5861 145 34 9 chr3 86629896 86631600 -131405558 - L1PA13 LINE L1 -20 6143 4397 565 306 31 35 chr3 86632159 86632473 -131404685 - MLT1G1 LTR MaLR -293 276 3 297 235 128 10 chr3 86633470 86633572 -131403586 + MER113 DNA MER1_type? 266 379 -142 354 237 124 10 chr3 86635740 86635837 -131401321 + L2 LINE L2 2230 2337 -977 665 131 0 19 chr3 86635837 86635944 -131401214 - AluSq/x SINE Alu -207 105 1 1462 325 114 36 chr3 86636288 86637011 -131400147 + L2 LINE L2 2218 3060 -253 2379 71 0 13 chr3 86637011 86637321 -131399837 - AluY SINE Alu -5 306 1 1462 325 114 36 chr3 86637321 86637596 -131399562 + L2 LINE L2 3060 3312 -1 276 410 0 17 chr3 86638173 86638290 -131398868 + G-rich Low_complexity Low_complexity 5 119 0 275 221 74 84 chr3 86639894 86640084 -131397074 - Alu SINE Alu 0 300 174 1502 236 134 64 chr3 86640542 86640655 -131396503 - L1MCb LINE L1 -3948 2616 2512 180 111 0 0 chr3 86640655 86640682 -131396476 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1502 236 134 64 chr3 86640682 86641103 -131396055 - L1MCb LINE L1 -4052 2512 2122 210 118 0 0 chr3 86641103 86641137 -131396021 + (TTA)n Simple_repeat Simple_repeat 1 34 0 1502 236 134 64 chr3 86641137 86641766 -131395392 - L1MCb LINE L1 -4442 2122 1496 2096 230 50 21 chr3 86641767 86642846 -131394312 - L1MCb LINE L1 -4849 1196 569 469 287 54 35 chr3 86643220 86643478 -131393680 + MER102b DNA MER1_type 79 341 0 1119 171 27 23 chr3 86643718 86643975 -131393183 + L1MA5 LINE L1 6043 6300 0 453 310 15 92 chr3 86644812 86645212 -131391946 + MLT1K LTR MaLR 218 586 -2 186 246 0 0 chr3 86645943 86646004 -131391154 + A-rich Low_complexity Low_complexity 1 61 0 21 0 0 0 chr3 86646298 86646319 -131390839 + AT_rich Low_complexity Low_complexity 1 21 0 1967 141 20 3 chr3 86647538 86647843 -131389315 - AluSq SINE Alu -3 310 1 24 67 0 0 chr3 86649058 86649103 -131388055 + AT_rich Low_complexity Low_complexity 1 45 0 1904 141 0 23 chr3 86650011 86650310 -131386848 + AluSx SINE Alu 3 294 -18 552 269 49 14 chr3 86650524 86650905 -131386253 - MLT1J2 LTR MaLR -8 442 4 2417 58 3 26 chr3 86653088 86653398 -131383760 + AluY SINE Alu 1 303 -8 293 244 22 22 chr3 86653419 86653509 -131383649 - LTR33 LTR ERVL -10 511 422 784 230 44 10 chr3 86653515 86653719 -131383439 - MER58A DNA MER1_type 0 224 14 425 258 86 54 chr3 86653785 86654099 -131383059 - LTR33 LTR ERVL -154 367 44 456 271 30 0 chr3 86655321 86655454 -131381704 + FLAM_A SINE Alu 6 142 0 1903 254 67 14 chr3 86655461 86656317 -131380841 + L1 LINE L1 2488 3388 -2758 510 182 85 30 chr3 86656591 86656756 -131380402 - L1MB2 LINE L1 -2 6169 5996 3527 60 0 13 chr3 86657037 86657504 -131379654 - L1PA3 LINE L1 -9 6146 5686 270 305 38 9 chr3 86660988 86661093 -131376065 - MIR SINE MIR -50 212 105 2284 208 50 47 chr3 86661293 86662057 -131375101 + L1 LINE L1 4616 5381 -765 6872 139 23 97 chr3 86662057 86663660 -131373498 - Tigger1 DNA MER2_type 0 2418 934 3795 97 1 61 chr3 86663699 86664399 -131372759 - L1PA3 LINE L1 -5 6150 5493 182 36 0 36 chr3 86666454 86666482 -131370676 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 590 374 36 16 chr3 86667662 86668047 -131369111 + L2 LINE L2 637 1029 -2285 679 330 27 17 chr3 86668145 86668472 -131368686 + L2 LINE L2 2474 2873 -440 222 252 32 98 chr3 86668508 86668631 -131368527 + L2 LINE L2 3010 3124 -189 388 105 12 12 chr3 86668737 86668823 -131368335 + (CAAAA)n Simple_repeat Simple_repeat 5 90 0 351 223 8 15 chr3 86668870 86669000 -131368158 + GA-rich Low_complexity Low_complexity 2 130 0 1243 256 138 8 chr3 86670218 86670609 -131366549 + MER45C DNA AcHobo 512 953 0 2245 109 6 6 chr3 86670801 86671114 -131366044 - AluSq SINE Alu 0 313 1 25 0 0 0 chr3 86672935 86672960 -131364198 + AT_rich Low_complexity Low_complexity 1 25 0 2158 150 5 17 chr3 86674557 86674978 -131362180 - L1PA6 LINE L1 -218 5936 5521 350 336 37 37 chr3 86676041 86676213 -131360945 + L1MEc LINE L1 82 256 -6140 396 0 0 0 chr3 86676213 86676257 -131360901 + (TG)n Simple_repeat Simple_repeat 2 45 0 350 336 37 37 chr3 86676257 86676355 -131360803 + L1MEc LINE L1 255 352 -6044 307 214 0 0 chr3 86676643 86676711 -131360447 + MLT1A1 LTR MaLR 298 358 -7 258 318 85 28 chr3 86676796 86676972 -131360186 - MIR SINE MIR -12 250 65 1674 159 23 30 chr3 86679188 86679489 -131357669 + AluJb SINE Alu 1 299 -13 30 0 0 0 chr3 86679873 86679903 -131357255 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 86679913 86679934 -131357224 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 86680143 86680165 -131356993 + AT_rich Low_complexity Low_complexity 1 22 0 230 0 33 0 chr3 86680371 86680401 -131356757 + (CA)n Simple_repeat Simple_repeat 2 32 0 734 285 9 14 chr3 86681283 86681497 -131355661 + MIR SINE MIR 48 260 -2 1170 56 0 7 chr3 86682461 86682603 -131354555 + AluY SINE Alu 1 141 -170 534 260 167 58 chr3 86683169 86683740 -131353418 - L2 LINE L2 0 3313 2672 269 263 42 68 chr3 86684308 86684426 -131352732 + MLT1K LTR MaLR 133 247 -341 646 230 168 0 chr3 86685708 86685869 -131351289 + MER5A DNA MER1_type 2 189 0 987 266 97 70 chr3 86687091 86687335 -131349823 + MER20B DNA MER1_type 28 264 -519 2506 143 68 8 chr3 86687335 86687804 -131349354 + L1MB3 LINE L1 5677 6173 -10 987 266 97 70 chr3 86687804 86688262 -131348896 + MER20B DNA MER1_type 264 749 -34 288 0 0 0 chr3 86688547 86688579 -131348579 + (T)n Simple_repeat Simple_repeat 1 32 0 197 283 0 0 chr3 86689140 86689186 -131347972 + MIR SINE MIR 45 90 -118 746 231 55 47 chr3 86689191 86689447 -131347711 - MLT1F1 LTR MaLR -2 565 308 355 295 86 7 chr3 86689480 86689619 -131347539 + MIR SINE MIR 93 242 -20 4601 175 48 12 chr3 86691348 86692378 -131344780 - L1M4c LINE L1 -4068 2578 1517 4020 198 23 50 chr3 86692486 86693840 -131343318 + L1MB3 LINE L1 4848 6175 -8 1017 291 173 12 chr3 86693886 86694315 -131342843 - MLT1E LTR MaLR -77 516 19 234 141 234 0 chr3 86694916 86694980 -131342178 - MADE1 DNA Mariner -1 79 1 55 0 0 0 chr3 86695076 86695131 -131342027 + AT_rich Low_complexity Low_complexity 1 55 0 434 237 30 8 chr3 86696278 86696409 -131340749 + L1MB4 LINE L1 6013 6146 -34 21 36 0 0 chr3 86697031 86697059 -131340099 + AT_rich Low_complexity Low_complexity 1 28 0 289 342 17 2 chr3 86698167 86698292 -131338866 + L2 LINE L2 2843 2964 -308 310 245 174 94 chr3 86699512 86699724 -131337434 + MIR SINE MIR 28 256 -6 616 327 58 30 chr3 86702926 86703287 -131333871 - L2 LINE L2 -32 3281 2911 264 333 32 32 chr3 86703396 86703585 -131333573 - MLT1J LTR MaLR 0 511 323 193 89 44 44 chr3 86703765 86703810 -131333348 + T-rich Low_complexity Low_complexity 1 45 0 2129 132 13 0 chr3 86703824 86704128 -131333030 - AluSx SINE Alu -4 308 1 283 222 26 26 chr3 86704602 86704755 -131332403 + (TA)n Simple_repeat Simple_repeat 1 153 0 22 56 0 0 chr3 86705014 86705050 -131332108 + AT_rich Low_complexity Low_complexity 1 36 0 573 276 57 0 chr3 86705510 86705738 -131331420 + L1MC4 LINE L1 6865 7105 -937 428 311 56 33 chr3 86705769 86706071 -131331087 + L1MC4 LINE L1 7092 7400 -642 201 262 0 24 chr3 86706156 86706240 -131330918 + A-rich Low_complexity Low_complexity 2 83 0 25 0 0 0 chr3 86706635 86706660 -131330498 + AT_rich Low_complexity Low_complexity 1 25 0 1890 143 14 11 chr3 86707502 86707789 -131329369 + AluSx SINE Alu 1 288 -24 186 118 0 0 chr3 86707792 86707826 -131329332 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 281 282 0 14 chr3 86707827 86707898 -131329260 - L2 LINE L2 0 3272 3203 452 363 58 24 chr3 86708036 86708413 -131328745 + L2 LINE L2 2447 2836 -478 204 333 60 60 chr3 86708508 86708691 -131328467 + L2 LINE L2 2947 3129 -184 396 0 0 0 chr3 86708843 86708887 -131328271 + (TG)n Simple_repeat Simple_repeat 2 45 0 557 311 125 16 chr3 86709074 86709395 -131327763 + LTR33 LTR ERVL 1 356 -165 439 336 110 32 chr3 86709490 86709954 -131327204 - L2 LINE L2 -668 2646 2147 6859 205 11 15 chr3 86710106 86710931 -131326227 - L1M1 LINE L1 -5866 1699 881 956 25 17 0 chr3 86710931 86711049 -131326109 - L1PA4 LINE L1 -3 6152 6033 6859 205 11 15 chr3 86711049 86711659 -131325499 - L1M1 LINE L1 -6684 881 270 200 282 8 46 chr3 86711812 86711943 -131325215 + T-rich Low_complexity Low_complexity 1 126 0 22 0 0 0 chr3 86713184 86713206 -131323952 + AT_rich Low_complexity Low_complexity 1 22 0 1238 149 13 53 chr3 86713265 86713493 -131323665 + MER20 DNA MER1_type 1 219 0 2223 109 3 0 chr3 86713990 86714283 -131322875 + AluSg SINE Alu 1 294 -16 652 289 50 4 chr3 86714368 86714607 -131322551 - MIR SINE MIR 0 262 13 856 217 66 5 chr3 86714962 86715160 -131321998 - MLT1D LTR MaLR -48 457 248 815 193 5 52 chr3 86717059 86717251 -131319907 + MER5A DNA MER1_type 1 183 -6 710 216 11 45 chr3 86717265 86717441 -131319717 + MER5B DNA MER1_type 1 170 -8 1628 170 6 43 chr3 86718306 86718630 -131318528 + AluJb SINE Alu 1 312 0 286 294 111 16 chr3 86718775 86718901 -131318257 - MIR SINE MIR -79 183 46 201 265 265 10 chr3 86719073 86719138 -131318020 + MIR SINE MIR 108 155 -107 270 0 0 0 chr3 86719138 86719168 -131317990 + (TG)n Simple_repeat Simple_repeat 2 31 0 201 265 265 10 chr3 86719168 86719204 -131317954 + MIR SINE MIR 155 235 -27 21 71 0 0 chr3 86719712 86719754 -131317404 + AT_rich Low_complexity Low_complexity 1 42 0 32 43 0 0 chr3 86721177 86721223 -131315935 + AT_rich Low_complexity Low_complexity 1 46 0 29 28 0 0 chr3 86722088 86722124 -131315034 + AT_rich Low_complexity Low_complexity 1 36 0 217 293 0 0 chr3 86722822 86722880 -131314278 + MIR SINE MIR 53 110 -152 3244 156 34 7 chr3 86723580 86724170 -131312988 + L1MB3 LINE L1 5571 6176 -7 714 281 41 44 chr3 86724634 86724972 -131312186 - MLT1I LTR MaLR -14 395 59 254 309 34 60 chr3 86725633 86725782 -131311376 - L2 LINE L2 -4 3309 3165 391 250 31 137 chr3 86725823 86726115 -131311043 - L2 LINE L2 -55 3258 2998 23 33 0 0 chr3 86726367 86726397 -131310761 + AT_rich Low_complexity Low_complexity 1 30 0 321 327 119 22 chr3 86727264 86727490 -131309668 + MIR SINE MIR 12 259 -3 5272 125 4 4 chr3 86728162 86728952 -131308206 - L1PA12 LINE L1 -72 6096 5307 1110 289 71 20 chr3 86728953 86729679 -131307479 + L1MEc LINE L1 1032 1710 -4832 513 275 67 63 chr3 86729689 86729958 -131307200 - MLT1H LTR MaLR -142 407 138 193 230 0 23 chr3 86730000 86730087 -131307071 + (TA)n Simple_repeat Simple_repeat 2 86 0 2853 102 3 5 chr3 86730457 86730841 -131306317 - L1PA13 LINE L1 0 6163 5781 327 25 0 0 chr3 86731170 86731210 -131305948 + (TA)n Simple_repeat Simple_repeat 2 41 0 1230 166 8 17 chr3 86731210 86731445 -131305713 - AluSg/x SINE Alu -12 300 68 891 213 0 0 chr3 86732241 86732415 -131304743 + G-rich Low_complexity Low_complexity 1 174 0 213 361 0 0 chr3 86732429 86732526 -131304632 + G-rich Low_complexity Low_complexity 4 100 0 312 185 33 179 chr3 86734628 86734779 -131302379 - L2 LINE L2 -2 3311 3183 183 139 0 0 chr3 86735741 86735777 -131301381 + (T)n Simple_repeat Simple_repeat 1 36 0 1554 199 3 7 chr3 86736716 86737017 -131300141 - AluSg SINE Alu -10 300 1 1138 61 0 0 chr3 86737245 86737376 -131299782 + AluSq/x SINE Alu 1 131 -182 387 0 0 0 chr3 86737376 86737419 -131299739 + (CA)n Simple_repeat Simple_repeat 2 44 0 29 0 0 0 chr3 86737703 86737732 -131299426 + AT_rich Low_complexity Low_complexity 1 29 0 535 283 169 35 chr3 86738225 86738568 -131298590 + MLT1L LTR MaLR 119 507 -108 936 252 15 49 chr3 86739496 86740057 -131297101 + L1M1 LINE L1 3537 4075 -3490 826 183 25 25 chr3 86740070 86740272 -131296886 + L1M1 LINE L1 4260 4461 -3104 265 182 36 0 chr3 86740274 86740329 -131296829 - LTR67 LTR ERVL -44 513 457 19386 45 1 38 chr3 86740743 86743904 -131293254 + L1PA3 LINE L1 3039 6152 -3 16515 94 7 19 chr3 86744743 86747220 -131289938 - L1P LINE L1 -2531 3615 1170 9173 53 10 29 chr3 86747220 86748321 -131288837 + L1PA6 LINE L1 4237 5293 -861 2448 74 0 0 chr3 86748321 86748617 -131288541 + AluY SINE Alu 1 296 -15 9173 53 10 29 chr3 86748617 86749461 -131287697 + L1PA6 LINE L1 5293 6152 -2 370 246 32 16 chr3 86749851 86749977 -131287181 + MLT1B LTR MaLR 21 148 -242 2254 112 0 10 chr3 86751506 86751818 -131285340 + AluSx SINE Alu 1 309 -3 315 207 49 0 chr3 86752455 86752537 -131284621 + L1MB3 LINE L1 6089 6174 -9 335 279 27 9 chr3 86752670 86752781 -131284377 + MIR SINE MIR 24 136 -126 3112 115 14 7 chr3 86752807 86753250 -131283908 + L1PA14 LINE L1 5710 6155 -6 1464 125 89 43 chr3 86753286 86753590 -131283568 + THE1C LTR MaLR 1 318 -57 2248 117 0 13 chr3 86753590 86753907 -131283251 - AluSp SINE Alu 0 313 1 217 290 90 65 chr3 86754651 86754806 -131282352 - MIR SINE MIR -59 149 8 284 276 263 13 chr3 86754830 86754991 -131282167 - MIR SINE MIR -12 250 46 672 156 220 43 chr3 86754991 86755177 -131281981 - MER20 DNA MER1_type 0 219 1 284 276 263 13 chr3 86755177 86755189 -131281969 - MIR SINE MIR -216 46 38 702 207 48 0 chr3 86756528 86756673 -131280485 - MER5A DNA MER1_type -4 185 34 2039 103 0 22 chr3 86756830 86757142 -131280016 + AluY SINE Alu 1 305 -6 379 308 20 20 chr3 86757402 86757548 -131279610 + L2 LINE L2 2445 2590 -724 798 168 51 108 chr3 86757548 86757614 -131279544 - MER20 DNA MER1_type 0 219 151 191 111 0 0 chr3 86757614 86757641 -131279517 + (TGG)n Simple_repeat Simple_repeat 1 27 0 798 168 51 108 chr3 86757641 86757788 -131279370 - MER20 DNA MER1_type -68 151 18 280 315 147 38 chr3 86757840 86758132 -131279026 + L2 LINE L2 2652 2975 -339 223 261 0 58 chr3 86758247 86758316 -131278842 + L2 LINE L2 3014 3078 -194 624 177 71 21 chr3 86759059 86759200 -131277958 - AluJb SINE Alu -19 293 146 302 302 81 17 chr3 86759480 86759652 -131277506 - L1M4 LINE L1 -768 5378 5196 16094 180 42 42 chr3 86762533 86764940 -131272218 - L1M1 LINE L1 -4043 3522 1113 3988 161 40 76 chr3 86764940 86765754 -131271404 - LTR1 LTR ERV1 0 785 1 16094 180 42 42 chr3 86765754 86766863 -131270295 - L1M1 LINE L1 -6451 1114 6 311 290 10 30 chr3 86766929 86767029 -131270129 - HAL1 LINE L1 -1672 835 738 246 287 103 36 chr3 86767399 86767594 -131269564 + L2 LINE L2 3104 3311 -2 24 0 0 0 chr3 86769371 86769395 -131267763 + AT_rich Low_complexity Low_complexity 1 24 0 556 284 61 37 chr3 86770579 86770802 -131266356 - MIR SINE MIR -1 261 34 285 295 16 41 chr3 86771955 86772077 -131265081 - MIR SINE MIR -136 126 8 204 227 23 0 chr3 86772506 86772550 -131264608 + MIR SINE MIR 123 167 -95 677 229 52 96 chr3 86775606 86775855 -131261303 - MER112 DNA MER1_type -12 248 11 3206 76 7 24 chr3 86776433 86776853 -131260305 - L1PA8A LINE L1 -9 6122 5710 424 266 52 19 chr3 86776863 86777026 -131260132 - L1ME3A LINE L1 -1 6163 6005 769 289 80 13 chr3 86777039 86777351 -131259807 - MER113 DNA MER1_type? -187 334 2 1022 83 23 0 chr3 86777541 86777674 -131259484 - AluY SINE Alu -14 297 162 2066 152 0 0 chr3 86778481 86778790 -131258368 + AluSx SINE Alu 1 309 -3 503 230 79 14 chr3 86780203 86780342 -131256816 - MIR SINE MIR -113 149 2 414 0 0 0 chr3 86781265 86781311 -131255847 + (CA)n Simple_repeat Simple_repeat 2 47 0 279 237 17 0 chr3 86781500 86781559 -131255599 - U7 snRNA snRNA -2 61 2 287 315 22 0 chr3 86782571 86782663 -131254495 - MER117 DNA MER1_type -45 152 59 3666 249 134 31 chr3 86783350 86784683 -131252475 + L1MC4 LINE L1 6571 8041 -1 427 304 124 26 chr3 86787479 86787752 -131249406 - L1ME3A LINE L1 -2072 5736 5437 369 0 0 0 chr3 86788414 86788455 -131248703 + (CA)n Simple_repeat Simple_repeat 2 42 0 435 200 45 18 chr3 86790034 86790144 -131247014 - L1MC5 LINE L1 -48 7913 7801 2274 95 3 3 chr3 86791041 86791335 -131245823 - AluSg SINE Alu -16 294 1 572 284 58 13 chr3 86792192 86792417 -131244741 + MIR SINE MIR 28 262 0 1682 171 25 0 chr3 86792535 86792809 -131244349 - AluJo SINE Alu -31 281 1 26 0 0 0 chr3 86792813 86792839 -131244319 + AT_rich Low_complexity Low_complexity 1 26 0 186 294 46 28 chr3 86793888 86793997 -131243161 + L2 LINE L2 2560 2670 -644 211 233 0 0 chr3 86794005 86794048 -131243110 - L2 LINE L2 -6 3307 3265 2118 124 3 13 chr3 86794197 86794512 -131242646 + AluSx SINE Alu 1 312 0 285 109 0 0 chr3 86797138 86797184 -131239974 + (TATATG)n Simple_repeat Simple_repeat 5 50 0 1000 191 0 16 chr3 86797329 86797518 -131239640 - MER58A DNA MER1_type 0 224 39 213 275 159 0 chr3 86799183 86799252 -131237906 - L2 LINE L2 -29 3284 3205 2708 176 31 20 chr3 86800193 86800737 -131236421 - L1MA9 LINE L1 -1 6311 5762 780 312 0 0 chr3 86800991 86801164 -131235994 + G-rich Low_complexity Low_complexity 1 173 0 261 265 0 0 chr3 86801175 86801277 -131235881 + G-rich Low_complexity Low_complexity 1 102 0 330 51 0 0 chr3 86801739 86801778 -131235380 + MADE1 DNA Mariner 1 39 -41 2516 206 77 16 chr3 86802042 86802166 -131234992 - MER1A DNA MER1_type -2173 527 412 267 60 60 0 chr3 86802166 86802216 -131234942 + (TTA)n Simple_repeat Simple_repeat 1 53 0 2516 206 77 16 chr3 86802216 86802586 -131234572 - MER1A DNA MER1_type -2288 412 3 27 0 0 0 chr3 86802772 86802799 -131234359 + GC_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr3 86802831 86802859 -131234299 + GC_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr3 86804587 86804609 -131232549 + (CA)n Simple_repeat Simple_repeat 1 22 0 1654 162 19 56 chr3 86805603 86806035 -131231123 + L1PA13 LINE L1 5748 6163 0 195 343 0 41 chr3 86806125 86806198 -131230960 - L2 LINE L2 -3004 310 241 769 298 36 30 chr3 86806445 86806781 -131230377 + MER93a LTR ERV1 63 400 -2 3399 138 21 67 chr3 86909273 86909990 -131127168 - L1MA8 LINE L1 -3 6288 5605 268 204 0 0 chr3 86910281 86910335 -131126823 + MER58B DNA MER1_type 29 82 -259 1150 153 9 31 chr3 86910437 86910660 -131126498 + MER58B DNA MER1_type 124 341 0 560 169 25 5 chr3 86910986 86911181 -131125977 + AluJ SINE Alu 14 309 -3 934 246 40 27 chr3 86911967 86912264 -131124894 + AluJo SINE Alu 2 302 0 188 228 18 0 chr3 86913120 86913177 -131123981 + CT-rich Low_complexity Low_complexity 2 59 0 534 305 56 39 chr3 86914205 86914438 -131122720 + MIR SINE MIR 20 256 -6 880 301 117 22 chr3 86914454 86914899 -131122259 - L2 LINE L2 0 3313 2827 398 266 44 75 chr3 86915322 86915571 -131121587 + MIR SINE MIR 3 251 -11 1178 204 5 0 chr3 86915606 86915826 -131121332 + MER58A DNA MER1_type 1 221 -3 216 162 0 0 chr3 86915954 86915991 -131121167 + (AATTG)n Simple_repeat Simple_repeat 3 39 0 232 244 37 24 chr3 86916264 86916346 -131120812 - MIR SINE MIR -92 116 34 577 255 194 23 chr3 86916559 86916960 -131120198 + L2 LINE L2 2803 3272 -41 199 267 0 17 chr3 86916995 86917055 -131120103 - MIR SINE MIR -21 241 183 189 184 0 0 chr3 86917053 86917091 -131120067 + L2 LINE L2 3275 3312 -1 * 399 315 65 23 chr3 86917128 86917344 -131119814 + MIR SINE MIR 31 255 -7 220 272 11 109 chr3 86917662 86917754 -131119404 - L2 LINE L2 0 3313 3231 201 302 156 47 chr3 86917878 86918070 -131119088 - MIR SINE MIR -1 261 49 255 298 158 12 chr3 86918116 86918287 -131118871 + MIR SINE MIR 61 256 -6 902 247 32 12 chr3 86918374 86918625 -131118533 - MIR SINE MIR -1 261 6 809 272 34 20 chr3 86919154 86919448 -131117710 - AluJb SINE Alu -8 304 7 22 70 0 0 chr3 86919457 86919500 -131117658 + AT_rich Low_complexity Low_complexity 1 43 0 468 118 0 0 chr3 86920831 86920899 -131116259 + AluJb SINE Alu 37 104 -208 783 151 0 0 chr3 86920900 86921051 -131116107 + AluSg/x SINE Alu 165 315 0 1782 177 7 3 chr3 86921565 86921859 -131115299 + AluSx SINE Alu 1 295 -17 2513 189 42 63 chr3 86921859 86922568 -131114590 - LTR8A LTR ERV1 0 727 34 414 322 44 6 chr3 86923844 86924027 -131113131 + MER20 DNA MER1_type 30 219 0 1168 171 73 7 chr3 86924035 86924310 -131112848 + MER33 DNA MER1_type 1 293 -31 991 215 62 0 chr3 86924404 86924613 -131112545 + MER58A DNA MER1_type 1 222 -2 2221 98 44 0 chr3 86924876 86925171 -131111987 + AluSx SINE Alu 1 308 -4 724 231 28 115 chr3 86925195 86925516 -131111642 - L2 LINE L2 -1 3312 3020 1657 186 0 0 chr3 86925975 86926244 -131110914 + AluJb SINE Alu 6 274 -38 4887 75 44 0 chr3 86926247 86926909 -131110249 + LTR8 LTR ERV1 1 691 0 264 77 0 0 chr3 86926918 86926957 -131110201 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 504 322 74 5 chr3 86927406 86927608 -131109550 + L2 LINE L2 2564 2779 -535 2847 94 0 39 chr3 86927609 86927729 -131109429 + L1PA10 LINE L1 5710 5833 -358 2279 94 0 0 chr3 86927729 86928026 -131109132 + AluY SINE Alu 1 297 -14 2847 94 0 39 chr3 86928026 86928405 -131108753 + L1PA10 LINE L1 5833 6191 0 225 275 94 31 chr3 86928419 86928579 -131108579 + L2 LINE L2 2806 2975 -338 309 338 0 39 chr3 86928602 86928756 -131108402 + L2 LINE L2 3150 3297 -16 467 311 76 13 chr3 86929606 86929831 -131107327 + MIR SINE MIR 15 253 -9 2419 51 0 7 chr3 86930224 86930517 -131106641 + AluY SINE Alu 2 292 -19 567 249 124 0 chr3 86930840 86931009 -131106149 + MIR SINE MIR 67 256 -6 240 284 34 23 chr3 86932337 86932425 -131104733 + MER5A DNA MER1_type 54 142 -47 894 168 99 40 chr3 86933455 86933582 -131103576 - MER20 DNA MER1_type -5 214 69 369 62 0 0 chr3 86933582 86933630 -131103528 + (CA)n Simple_repeat Simple_repeat 2 49 0 894 168 99 40 chr3 86933630 86933704 -131103454 - MER20 DNA MER1_type -150 69 1 1615 147 30 85 chr3 86933865 86934266 -131102892 + L1MB8 LINE L1 5545 5923 -255 454 202 48 0 chr3 86934266 86934350 -131102808 + MER7A DNA MER2_type 1 86 -260 2096 171 56 0 chr3 86934376 86934769 -131102389 + MSTA LTR MaLR 14 428 0 1416 165 20 0 chr3 86934770 86935024 -131102134 + MER7A DNA MER2_type 78 336 0 923 192 37 33 chr3 86935024 86935269 -131101889 + L1MB8 LINE L1 5922 6167 -11 520 232 126 35 chr3 86935682 86935880 -131101278 + MLT1L LTR MaLR 368 583 -32 445 316 82 25 chr3 86936372 86936616 -131100542 + L1ME4a LINE L1 5658 5915 -206 21 0 0 0 chr3 86936773 86936794 -131100364 + AT_rich Low_complexity Low_complexity 1 21 0 352 276 0 37 chr3 86937005 86937060 -131100098 + MER94 DNA DNA 1 57 -77 2266 131 0 0 chr3 86937060 86937372 -131099786 + AluSx SINE Alu 1 312 0 352 276 0 37 chr3 86937372 86937450 -131099708 + MER94 DNA DNA 57 129 -5 202 359 66 47 chr3 86937642 86937748 -131099410 + L2 LINE L2 3149 3256 -16 34 42 0 0 chr3 86938491 86938539 -131098619 + AT_rich Low_complexity Low_complexity 1 48 0 265 295 32 11 chr3 86939836 86939931 -131097227 - MER5A DNA MER1_type -66 123 27 199 238 0 0 chr3 86939964 86940006 -131097152 + MER5A DNA MER1_type 9 50 -139 301 298 123 0 chr3 86940766 86940880 -131096278 + L2 LINE L2 3181 3308 -5 294 310 82 44 chr3 86941118 86941276 -131095882 + MIR SINE MIR 21 184 -78 513 233 199 14 chr3 86941323 86941469 -131095689 + MER5A DNA MER1_type 16 188 -1 307 301 208 33 chr3 86942105 86942288 -131094870 - MIR SINE MIR -1 261 47 23 33 0 0 chr3 86942953 86942983 -131094175 + AT_rich Low_complexity Low_complexity 1 30 0 25 75 0 0 chr3 86943044 86943097 -131094061 + AT_rich Low_complexity Low_complexity 1 53 0 512 263 77 38 chr3 86943385 86943594 -131093564 + MIR SINE MIR 46 262 0 257 279 75 58 chr3 86944720 86944946 -131092212 - L1ME4a LINE L1 -26 6095 5866 1392 182 59 102 chr3 86945178 86945569 -131091589 - MLT1A2 LTR MaLR 0 374 1 318 386 47 21 chr3 86945729 86945965 -131091193 - L2 LINE L2 -177 3095 2854 290 236 0 0 chr3 86946627 86946682 -131090476 - MER91A DNA MER1_type 0 196 142 299 390 14 35 chr3 86946721 86946862 -131090296 - MER91A DNA MER1_type -31 165 28 1353 83 0 6 chr3 86947312 86947480 -131089678 - AluSp SINE Alu -146 167 1 2400 82 3 22 chr3 86947610 86947928 -131089230 + AluSx SINE Alu 1 312 0 1877 137 0 17 chr3 86948129 86948422 -131088736 + AluJo SINE Alu 25 312 0 192 356 52 22 chr3 86948433 86948568 -131088590 + MIR SINE MIR 20 158 -104 21 0 0 0 chr3 86948617 86948638 -131088520 + AT_rich Low_complexity Low_complexity 1 21 0 313 281 61 0 chr3 86948691 86948773 -131088385 + MIR SINE MIR 53 139 -123 320 50 0 100 chr3 86948795 86948855 -131088303 + MLT1A1 LTR MaLR 1 54 -311 1418 209 63 0 chr3 86948905 86949207 -131087951 + MLT1A1 LTR MaLR 44 364 -1 21 36 0 0 chr3 86949214 86949242 -131087916 + AT_rich Low_complexity Low_complexity 1 28 0 271 261 182 11 chr3 86949276 86949364 -131087794 + MIR SINE MIR 18 120 -142 2093 122 10 3 chr3 86950099 86950395 -131086763 + AluSq SINE Alu 1 298 -15 518 43 14 0 chr3 86950395 86950464 -131086694 + (GGAA)n Simple_repeat Simple_repeat 1 70 0 1192 43 0 12 chr3 86950464 86950625 -131086533 + (GAAA)n Simple_repeat Simple_repeat 4 162 0 230 329 87 74 chr3 86951008 86951239 -131085919 + L2 LINE L2 3030 3263 -9 263 340 49 14 chr3 86952812 86952956 -131084202 + MIR SINE MIR 80 228 -34 250 336 97 9 chr3 86953040 86953153 -131084005 + MIR3 SINE MIR 34 156 -52 385 248 76 76 chr3 86953277 86953434 -131083724 + MER102a DNA MER1_type 174 330 0 411 265 26 90 chr3 86953442 86953631 -131083527 + MER5B DNA MER1_type 1 177 -1 24 0 0 0 chr3 86953726 86953750 -131083408 + AT_rich Low_complexity Low_complexity 1 24 0 28 0 0 0 chr3 86953877 86953905 -131083253 + AT_rich Low_complexity Low_complexity 1 28 0 932 231 39 0 chr3 86954379 86954587 -131082571 + MER20 DNA MER1_type 1 216 -3 1565 166 87 10 chr3 86955249 86955538 -131081620 - AluJo SINE Alu -1 311 1 224 255 20 0 chr3 86955797 86955848 -131081310 + L3b LINE CR1 1530 1581 -2 282 300 30 20 chr3 86956344 86956444 -131080714 + MIR SINE MIR 45 145 -63 3164 83 34 2 chr3 86956850 86957298 -131079860 + L1PA13 LINE L1 5701 6162 -1 243 298 75 21 chr3 86957330 86957424 -131079734 + MIR SINE MIR 146 244 -18 376 280 115 19 chr3 86957535 86957692 -131079466 + MER5B DNA MER1_type 6 177 -1 334 164 0 0 chr3 86957798 86957853 -131079305 + MER5B DNA MER1_type 120 174 -4 332 316 24 66 chr3 86957858 86958024 -131079134 - MIR SINE MIR -62 146 35 755 230 56 0 chr3 86958822 86959000 -131078158 - MER5A DNA MER1_type 0 189 2 237 344 107 0 chr3 86959494 86959616 -131077542 - MIR SINE MIR -16 246 112 2699 102 25 21 chr3 86959917 86960362 -131076796 + MER4C LTR ERV1 1 463 -2 604 244 98 57 chr3 86960364 86960642 -131076516 + MLT1D LTR MaLR 23 317 -188 2147 146 0 0 chr3 86960642 86960951 -131076207 + AluSx SINE Alu 1 309 -3 604 244 98 57 chr3 86960951 86960987 -131076171 + MLT1D LTR MaLR 317 350 -155 1384 106 28 18 chr3 86961432 86961649 -131075509 + L1PA13 LINE L1 5942 6160 -3 252 165 132 55 chr3 86961663 86961754 -131075404 + MIR SINE MIR 159 256 -6 201 333 104 0 chr3 86962718 86962814 -131074344 + L2 LINE L2 3147 3252 -20 572 215 55 40 chr3 86962959 86963100 -131074058 + L1MC5 LINE L1 7233 7379 -582 1794 137 68 44 chr3 86963100 86963466 -131073692 + THE1C LTR MaLR 1 375 0 572 215 55 40 chr3 86963466 86963524 -131073634 + L1MC5 LINE L1 7379 7435 -526 207 0 0 0 chr3 86963613 86963636 -131073522 + (TATG)n Simple_repeat Simple_repeat 2 24 0 2128 134 3 0 chr3 86963710 86964008 -131073150 - AluSx SINE Alu -13 299 1 825 228 60 46 chr3 86964021 86964456 -131072702 + L1MC5 LINE L1 7469 7909 -52 608 261 39 7 chr3 86964528 86964681 -131072477 + MIR SINE MIR 88 245 -17 895 191 96 0 chr3 86965497 86965696 -131071462 + MER20 DNA MER1_type 1 218 -1 344 275 28 24 chr3 86965710 86965861 -131071297 + MIR SINE MIR 31 219 -43 3511 134 59 16 chr3 86967118 86967744 -131069414 - MER39B LTR ERV1 0 653 1 551 256 24 11 chr3 86969328 86969596 -131067562 - MLT1I LTR MaLR -5 404 67 185 295 32 42 chr3 86969701 86969796 -131067362 - MIR SINE MIR -12 250 157 600 211 9 0 chr3 86970057 86970171 -131066987 - MIR SINE MIR -92 170 56 2256 150 42 20 chr3 86970251 86970657 -131066501 + MSTC LTR MaLR 1 415 -13 2297 102 3 0 chr3 86971490 86971784 -131065374 - AluSg SINE Alu -13 297 3 1452 234 29 22 chr3 86972175 86972585 -131064573 - MLT1C LTR MaLR -2 465 53 550 247 0 97 chr3 86973000 86973186 -131063972 - L2 LINE L2 -1 3312 3145 425 339 31 42 chr3 86973957 86974149 -131063009 - L2 LINE L2 -2 3270 3081 431 290 73 73 chr3 86974692 86975064 -131062094 + MLT1J2 LTR MaLR 31 402 -48 245 283 104 28 chr3 86975172 86975278 -131061880 - MIR SINE MIR -71 137 24 203 229 16 0 chr3 86976410 86976471 -131060687 + (TA)n Simple_repeat Simple_repeat 1 62 0 1666 169 5 82 chr3 86977986 86978400 -131058758 - MLT1B LTR MaLR 0 390 9 348 376 0 8 chr3 86978497 86978614 -131058544 - MIR3 SINE MIR -85 123 8 185 323 81 48 chr3 86978612 86978736 -131058422 - L2 LINE L2 -6 3307 3180 * 2318 109 3 0 chr3 86979975 86980279 -131056879 + AluSg SINE Alu 2 306 -4 236 274 196 12 chr3 86980284 86980452 -131056706 + L3 LINE CR1 324 522 -1055 23 68 0 0 chr3 86980486 86980530 -131056628 + AT_rich Low_complexity Low_complexity 1 44 0 292 333 41 16 chr3 86980610 86980733 -131056425 - L2 LINE L2 -9 3304 3179 243 217 33 0 chr3 86981111 86981171 -131055987 + MLT1L LTR MaLR 140 201 -414 320 350 138 21 chr3 86981755 86982044 -131055114 + L3 LINE CR1 889 1211 -366 2392 106 0 28 chr3 86982489 86982846 -131054312 - MER1A DNA MER1_type 0 529 183 540 244 102 0 chr3 86983130 86983306 -131053852 + MLT1J2 LTR MaLR 15 208 -242 287 322 158 27 chr3 86983825 86983971 -131053187 - MER5B DNA MER1_type -7 171 7 331 251 68 99 chr3 86984419 86984610 -131052548 + MLT1L LTR MaLR 224 512 -103 498 225 8 17 chr3 86985330 86985450 -131051708 + MLT1J2 LTR MaLR 349 467 0 609 288 85 21 chr3 86985459 86985695 -131051463 - MIR SINE MIR 0 262 12 721 173 14 14 chr3 86986044 86986183 -131050975 - FLAM_C SINE Alu -4 139 1 796 165 0 23 chr3 86986263 86986396 -131050762 - FLAM_C SINE Alu -2 131 2 304 235 165 0 chr3 86986459 86986574 -131050584 + MER5A DNA MER1_type 56 189 0 378 0 0 0 chr3 86987048 86987090 -131050068 + (TG)n Simple_repeat Simple_repeat 2 43 0 188 282 0 0 chr3 86987440 86987479 -131049679 + MIR SINE MIR 210 248 -14 7875 40 9 6 chr3 86987792 86989543 -131047615 + L1PA6 LINE L1 4401 6154 0 294 178 144 10 chr3 86989640 86989750 -131047408 - AluJ/FRAM SINE Alu 0 302 229 1635 279 92 10 chr3 86990566 86991280 -131045878 - L1ME3A LINE L1 -21 6149 5377 13100 177 41 31 chr3 86991285 86996720 -131040438 - L1MA5 LINE L1 -6 7356 1864 714 236 120 46 chr3 86996772 86997246 -131039912 - L1MA5 LINE L1 -6109 1100 442 269 227 30 25 chr3 86997246 86997414 -131039744 - L1ME3A LINE L1 -769 5377 5219 342 316 0 0 chr3 86997874 86998007 -131039151 - L1MC4a LINE L1 -1972 5836 5704 426 248 0 34 chr3 86998106 86998223 -131038935 + MER69A DNA AcHobo 1 113 -64 447 294 20 20 chr3 87000336 87000584 -131036574 - L1MEc LINE L1 -4853 1543 1296 1454 222 62 10 chr3 87001112 87001722 -131035436 + L1ME LINE L1 5127 5771 -393 2197 100 4 0 chr3 87001754 87002056 -131035102 + AluSg SINE Alu 1 303 0 601 345 14 5 chr3 87003451 87003671 -131033487 + MIR SINE MIR 29 250 -12 1955 156 106 106 chr3 87004090 87004649 -131032509 + MER89 LTR ERV1 1 559 0 266 277 135 61 chr3 87005687 87005983 -131031175 + L2 LINE L2 2995 3312 -1 251 216 102 0 chr3 87006796 87006884 -131030274 - L1MC4a LINE L1 -525 5596 5500 246 257 30 0 chr3 87006887 87006988 -131030170 + L1ME LINE L1 5665 5768 -398 507 285 41 14 chr3 87007073 87007294 -131029864 - L1ME LINE L1 -560 5604 5378 325 189 32 21 chr3 87007296 87007391 -131029767 - L1ME LINE L1 -814 5332 5237 201 74 0 0 chr3 87007413 87007440 -131029718 + (CA)n Simple_repeat Simple_repeat 2 28 0 231 228 20 40 chr3 87007450 87007551 -131029607 + L1PA15-16 LINE L1 2404 2502 -4347 256 235 26 35 chr3 87007608 87007723 -131029435 - L1ME LINE L1 -904 5242 5129 647 312 59 5 chr3 87007818 87008225 -131028933 + L1MEc LINE L1 1331 1759 -4637 406 349 49 15 chr3 87008281 87008545 -131028613 + L1MEc LINE L1 1851 2123 -4273 614 287 147 0 chr3 87008906 87009178 -131027980 - MLT1I LTR MaLR 0 409 98 1896 133 60 41 chr3 87009237 87009605 -131027553 - THE1C LTR MaLR 0 375 1 8703 132 18 55 chr3 87009605 87011238 -131025920 - THE1C-int LTR MaLR 0 1580 7 225 284 0 0 chr3 87011512 87011586 -131025572 + (TATATG)n Simple_repeat Simple_repeat 2 75 0 319 294 0 22 chr3 87011586 87011678 -131025480 + L1MC4 LINE L1 6614 6703 -1339 792 180 0 0 chr3 87011786 87011914 -131025244 + FLAM_C SINE Alu 1 128 -5 289 272 40 56 chr3 87012393 87012518 -131024640 - MIR SINE MIR -61 201 79 629 237 92 60 chr3 87013620 87013869 -131023289 + MIR SINE MIR 5 261 -1 1839 140 156 0 chr3 87014582 87014897 -131022261 + THE1B LTR MaLR 1 364 0 1121 265 49 50 chr3 87015027 87015612 -131021546 + L2 LINE L2 2481 3067 -246 395 302 0 0 chr3 87015695 87015801 -131021357 + MER94 DNA DNA 27 132 -2 491 240 23 104 chr3 87015812 87016033 -131021125 + L2 LINE L2 3111 3313 0 2709 104 0 3 chr3 87016298 87016663 -131020495 - THE1B LTR MaLR 0 364 1 232 376 65 0 chr3 87016919 87017012 -131020146 + L2 LINE L2 3185 3283 -30 1418 18 0 18 chr3 87018968 87019137 -131018021 + L1PA3 LINE L1 5989 6154 -1 463 275 42 80 chr3 87019424 87019686 -131017472 - MLT1J LTR MaLR -44 467 216 503 353 33 5 chr3 87020933 87021117 -131016041 + MIR SINE MIR 4 192 -70 2335 158 71 9 chr3 87021173 87021610 -131015548 - MLT2C2 LTR ERVL 0 464 1 2798 82 3 0 chr3 87023203 87023557 -131013601 - THE1A LTR MaLR 0 355 1 11909 87 5 2 chr3 87023558 87025132 -131012026 - THE1A-int LTR MaLR -1 1579 1 2566 111 6 0 chr3 87025132 87025485 -131011673 - THE1A LTR MaLR 0 355 1 390 324 27 0 chr3 87025502 87025613 -131011545 + MIR SINE MIR 36 149 -113 2309 91 3 3 chr3 87025615 87025911 -131011247 + AluSx SINE Alu 1 296 -16 287 116 0 0 chr3 87026562 87026605 -131010553 + MLT1A1 LTR MaLR 121 163 -202 22 0 0 0 chr3 87026638 87026660 -131010498 + AT_rich Low_complexity Low_complexity 1 22 0 378 344 15 0 chr3 87026753 87026884 -131010274 - MIR SINE MIR -52 210 78 1227 219 31 16 chr3 87027032 87027350 -131009808 + MLT1A1 LTR MaLR 10 441 -26 258 333 93 0 chr3 87027375 87027483 -131009675 - MIR SINE MIR -99 163 46 948 240 115 40 chr3 87027661 87027982 -131009176 + MLT1I LTR MaLR 7 361 -48 1871 122 47 70 chr3 87027982 87028366 -131008792 - THE1C LTR MaLR 0 375 1 948 240 115 40 chr3 87028366 87028419 -131008739 + MLT1I LTR MaLR 361 409 0 244 240 107 0 chr3 87028604 87028679 -131008479 - Charlie8 DNA MER1_type -2225 192 110 249 289 96 0 chr3 87028812 87028895 -131008263 + MIR SINE MIR 55 145 -63 908 151 15 34 chr3 87030074 87030279 -131006879 + L1MA6 LINE L1 6099 6299 -1 388 345 40 28 chr3 87030437 87030614 -131006544 + MER5A DNA MER1_type 1 179 -10 643 287 14 14 chr3 87030625 87030834 -131006324 - MLT1K LTR MaLR -7 581 373 517 298 43 43 chr3 87030869 87031077 -131006081 - MIR SINE MIR -40 222 15 2366 99 0 0 chr3 87031645 87031947 -131005211 + AluSx SINE Alu 3 304 -8 253 299 37 37 chr3 87032170 87032277 -131004881 + MLT1G LTR MaLR 236 342 -248 274 211 44 11 chr3 87032348 87032438 -131004720 + MLT1G LTR MaLR 498 590 0 590 311 38 9 chr3 87032811 87033023 -131004135 - MIR SINE MIR -35 227 10 442 330 91 5 chr3 87035880 87036082 -131001076 + MIR SINE MIR 19 228 -34 212 286 182 0 chr3 87036309 87036386 -131000772 - MIR SINE MIR 0 262 172 252 182 0 0 chr3 87036512 87036556 -131000602 - L3 LINE CR1 -887 690 647 359 68 17 0 chr3 87036994 87037053 -131000105 + (TC)n Simple_repeat Simple_repeat 2 61 0 369 0 0 0 chr3 87037055 87037096 -131000062 + (CA)n Simple_repeat Simple_repeat 1 41 0 2729 229 54 19 chr3 87037310 87038102 -130999056 + MER99 DNA DNA 5 824 -4 715 178 178 0 chr3 87038558 87038598 -130998560 - MLT2B1 LTR ERVL 0 520 488 547 48 24 0 chr3 87038598 87038681 -130998477 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 715 178 178 0 chr3 87038681 87038814 -130998344 - MLT2B1 LTR ERVL -32 488 316 7561 139 48 8 chr3 87038821 87040184 -130996974 - Ricksha DNA DNA -8 3238 1821 1421 150 118 0 chr3 87040182 87040436 -130996722 - Ricksha DNA DNA -1758 288 5 * 1268 218 44 19 chr3 87040436 87040757 -130996401 - MLT2B1 LTR ERVL -191 329 1 2253 74 20 3 chr3 87041134 87041430 -130995728 + AluY SINE Alu 1 301 -10 352 285 54 90 chr3 87041550 87042030 -130995128 - MLT1J LTR MaLR -44 467 5 354 23 0 0 chr3 87042092 87042135 -130995023 + (CA)n Simple_repeat Simple_repeat 1 43 0 24 0 0 0 chr3 87042395 87042419 -130994739 + AT_rich Low_complexity Low_complexity 1 24 0 227 256 24 37 chr3 87043361 87043443 -130993715 + L2 LINE L2 3026 3106 -207 1647 184 4 7 chr3 87043488 87043766 -130993392 - AluJo SINE Alu -25 287 11 599 261 43 39 chr3 87043781 87043988 -130993170 + L2 LINE L2 3101 3308 -5 218 341 77 0 chr3 87043989 87044080 -130993078 + MIR SINE MIR 165 262 0 253 260 213 39 chr3 87044819 87044946 -130992212 - MIR3 SINE MIR -25 183 35 2487 15 0 0 chr3 87046171 87046445 -130990713 + AluYb8 SINE Alu 37 310 -8 599 266 197 0 chr3 87048269 87048487 -130988671 + MIR SINE MIR 2 262 0 183 318 183 8 chr3 87048961 87049087 -130988071 + L2 LINE L2 2607 2754 -560 517 281 38 6 chr3 87049202 87049362 -130987796 - MIR SINE MIR -13 249 85 466 254 27 0 chr3 87049647 87049757 -130987401 - MIR SINE MIR -70 192 80 4212 77 9 0 chr3 87050562 87051111 -130986047 - MER41A LTR ERV1 0 554 1 299 230 30 0 chr3 87051640 87051740 -130985418 + L1MC5 LINE L1 7808 7910 -51 296 335 101 41 chr3 87051950 87052168 -130984990 + MIR SINE MIR 19 249 -13 416 342 71 58 chr3 87053170 87053732 -130983426 - L2 LINE L2 -11 3302 2726 276 30 0 0 chr3 87053920 87053953 -130983205 + (CA)n Simple_repeat Simple_repeat 1 33 0 1035 283 168 16 chr3 87054223 87054669 -130982489 + L2 LINE L2 2425 2938 -376 537 236 81 7 chr3 87054675 87054823 -130982335 + MER5A DNA MER1_type 3 161 -28 207 0 0 0 chr3 87054823 87054846 -130982312 + (T)n Simple_repeat Simple_repeat 1 23 0 781 298 42 24 chr3 87055095 87055344 -130981814 - MLT1J LTR MaLR -198 313 57 2016 126 73 22 chr3 87055344 87055701 -130981457 + THE1C LTR MaLR 1 375 0 781 298 42 24 chr3 87055701 87055740 -130981418 - MLT1J LTR MaLR -454 57 20 540 193 0 0 chr3 87055777 87055865 -130981293 - FLAM_A SINE Alu -23 119 32 351 354 46 8 chr3 87056021 87056151 -130981007 + L2 LINE L2 3138 3272 0 656 316 79 20 chr3 87056420 87057479 -130979679 + L1ME3A LINE L1 2114 3235 -2911 275 255 47 19 chr3 87058150 87058256 -130978902 - LTR67 LTR ERVL 0 557 449 1464 238 21 3 chr3 87059670 87060053 -130977105 + L1ME3A LINE L1 5367 5756 -406 517 236 25 101 chr3 87060063 87060134 -130977024 + L1ME3A LINE L1 5911 5986 -184 2179 74 17 23 chr3 87060134 87060433 -130976725 + AluSg SINE Alu 1 297 -13 517 236 25 101 chr3 87060433 87060637 -130976521 + L1ME3A LINE L1 5986 6165 -5 260 180 66 0 chr3 87060748 87060809 -130976349 + MIR SINE MIR 109 173 -89 249 341 32 16 chr3 87060791 87060914 -130976244 + L2 LINE L2 2919 3043 -229 * 444 242 12 115 chr3 87061176 87061420 -130975738 - LTR67 LTR ERVL -333 224 6 342 350 21 14 chr3 87061445 87061588 -130975570 + L2 LINE L2 3170 3313 0 191 260 100 0 chr3 87061724 87061774 -130975384 + L2 LINE L2 3214 3268 -4 2147 105 7 0 chr3 87062331 87062637 -130974521 + L1PA10 LINE L1 5858 6165 -3 403 200 47 12 chr3 87063732 87063817 -130973341 - L2 LINE L2 -8 3264 3177 1033 141 27 77 chr3 87063822 87064042 -130973116 - MER3 DNA MER1_type 0 209 1 349 343 24 12 chr3 87065845 87066014 -130971144 + MIR SINE MIR 75 245 -17 350 111 0 0 chr3 87066142 87066201 -130970957 - L1 LINE L1 -1987 4159 4101 1158 120 31 5 chr3 87066201 87066393 -130970765 + L1PA15 LINE L1 5686 5882 -283 4863 151 30 15 chr3 87066397 87067649 -130969509 - L1MB1 LINE L1 0 6168 4902 1975 180 34 3 chr3 87068321 87068699 -130968459 + MSTD LTR MaLR 7 396 0 2290 211 107 68 chr3 87068875 87069640 -130967518 + MER21B LTR ERV1 17 811 -52 253 276 13 0 chr3 87069718 87069794 -130967364 - Charlie8 DNA MER1_type -2 2415 2339 786 215 11 26 chr3 87069894 87070085 -130967073 - Charlie8 DNA MER1_type -2152 265 78 557 191 59 15 chr3 87070147 87070283 -130966875 + L1ME3A LINE L1 6028 6169 -1 2471 78 0 3 chr3 87070393 87070701 -130966457 - AluY SINE Alu -2 309 3 338 321 36 21 chr3 87070894 87071034 -130966124 + MIR3 SINE MIR 3 144 -64 1833 159 29 0 chr3 87071080 87071357 -130965801 + AluJo SINE Alu 1 285 -27 1479 143 177 0 chr3 87071382 87071676 -130965482 - THE1C LTR MaLR 0 375 30 522 260 125 5 chr3 87071735 87071898 -130965260 - MER5A DNA MER1_type 0 189 4 317 271 50 132 chr3 87072632 87072890 -130964268 + MIR SINE MIR 20 256 -6 1993 123 155 13 chr3 87072916 87073291 -130963867 - MSTA LTR MaLR 0 428 1 589 281 94 5 chr3 87073589 87073781 -130963377 + MIR SINE MIR 34 242 -20 192 40 0 0 chr3 87073784 87073809 -130963349 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1759 268 173 25 chr3 87074874 87075939 -130961219 + L2 LINE L2 2094 3313 0 436 318 26 7 chr3 87076329 87076483 -130960675 - MLT1K LTR MaLR -132 456 300 1178 264 89 23 chr3 87076953 87077381 -130959777 - MLT1E LTR MaLR 0 593 138 257 132 0 0 chr3 87127392 87127430 -130909728 - MSTC LTR MaLR -390 38 1 915 275 115 75 chr3 87127526 87127967 -130909191 + L1MEd LINE L1 288 710 -5800 805 168 0 0 chr3 87127967 87128092 -130909066 - FLAM_C SINE Alu -8 125 1 915 275 115 75 chr3 87128092 87128895 -130908263 + L1MEd LINE L1 710 1624 -4886 517 211 18 9 chr3 87129550 87129664 -130907494 - FRAM SINE Alu -57 119 5 22 0 0 0 chr3 87129737 87129759 -130907399 + AT_rich Low_complexity Low_complexity 1 22 0 2445 62 0 13 chr3 87129768 87130073 -130907085 - AluY SINE Alu -10 301 1 484 233 43 95 chr3 87130331 87130484 -130906674 + L1MEd LINE L1 2339 2474 -3908 1536 176 29 18 chr3 87130484 87130608 -130906550 + AluJo SINE Alu 1 122 -190 195 42 0 0 chr3 87130608 87130632 -130906526 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1536 176 29 18 chr3 87130632 87130786 -130906372 + AluJo SINE Alu 122 282 -30 484 233 43 95 chr3 87130786 87130915 -130906243 + L1MEd LINE L1 2474 2608 -3774 375 248 103 64 chr3 87130907 87131141 -130906017 + L1M4 LINE L1 4008 4250 -1896 * 481 224 78 0 chr3 87131143 87131259 -130905899 - FLAM_C SINE Alu -18 125 1 243 268 14 0 chr3 87131269 87131340 -130905818 + L1M4 LINE L1 4280 4351 -1795 1914 118 27 0 chr3 87131356 87131619 -130905539 + AluSx SINE Alu 1 270 -42 530 303 76 31 chr3 87132668 87132958 -130904200 - L1MD1 LINE L1 -324 6154 5852 1496 224 12 17 chr3 87133257 87133676 -130903482 + L1M4 LINE L1 4270 4686 -1460 1561 191 14 11 chr3 87134258 87134535 -130902623 - AluJo SINE Alu -34 278 1 247 119 17 85 chr3 87136699 87136758 -130900400 - MLT1B LTR MaLR -335 55 1 282 182 15 15 chr3 87136769 87136835 -130900323 - L1M4 LINE L1 -1593 4553 4488 1896 88 0 4 chr3 87136863 87137101 -130900057 + AluSg SINE Alu 55 291 -19 660 244 108 54 chr3 87137103 87137512 -130899646 - L1MEc LINE L1 -4603 1793 1363 2068 128 10 0 chr3 87137571 87137869 -130899289 + AluSx SINE Alu 1 301 -11 519 265 62 8 chr3 87137920 87138180 -130898978 - L1MD1 LINE L1 -878 5504 5231 2186 195 177 113 chr3 87138294 87139547 -130897611 + L1M4 LINE L1 3786 5119 -1027 1672 218 80 15 chr3 87139998 87141016 -130896142 - L1MD1 LINE L1 -3473 2909 1731 459 227 53 0 chr3 87141025 87141042 -130896116 + L1M4 LINE L1 4690 4705 -1441 2321 83 7 3 chr3 87141042 87141343 -130895815 + AluY SINE Alu 1 302 -9 459 227 53 0 chr3 87141343 87141457 -130895701 + L1M4 LINE L1 4705 4828 -1318 494 297 88 33 chr3 87141724 87142088 -130895070 - MLT2F LTR ERVL 0 663 280 370 342 43 19 chr3 87142166 87142327 -130894831 - MLT2F LTR ERVL -493 170 6 1562 174 3 47 chr3 87142399 87142698 -130894460 + AluJb SINE Alu 1 286 -26 215 409 0 0 chr3 87143089 87143177 -130893981 + L2 LINE L2 3102 3189 -83 354 292 38 72 chr3 87143247 87143456 -130893702 - L2 LINE L2 0 3313 3112 182 361 144 0 chr3 87144544 87144641 -130892517 - L2 LINE L2 0 3272 3162 261 288 0 0 chr3 87144692 87144751 -130892407 + (CGTG)n Simple_repeat Simple_repeat 4 62 0 450 354 52 18 chr3 87144811 87145040 -130892118 - L2 LINE L2 -273 3040 2804 268 132 19 0 chr3 87145746 87145799 -130891359 + L1MB7 LINE L1 5221 5274 -872 * 335 199 8 107 chr3 87145797 87145873 -130891285 + L1MD3 LINE L1 7863 7922 -73 2428 55 7 3 chr3 87145873 87146183 -130890975 - AluY SINE Alu 0 311 1 335 199 8 107 chr3 87146183 87146237 -130890921 + L1MD3 LINE L1 7922 7980 -15 2613 240 88 0 chr3 87146249 87147036 -130890122 + L1MB7 LINE L1 5320 6175 -9 715 247 98 11 chr3 87148881 87149055 -130888103 + MER5A DNA MER1_type 1 189 0 1097 173 11 0 chr3 87149103 87149282 -130887876 + AluJb SINE Alu 132 312 0 267 330 11 34 chr3 87149603 87149691 -130887467 - MIR SINE MIR -157 105 20 1829 184 7 7 chr3 87149793 87150097 -130887061 - AluJb SINE Alu -8 304 1 314 315 71 0 chr3 87151782 87151909 -130885249 + MIR SINE MIR 75 210 -52 340 364 34 34 chr3 87151936 87152351 -130884807 - MER110-int LTR ERV1 -1937 2710 2296 488 263 31 12 chr3 87152617 87152777 -130884381 - MER110-int LTR ERV1 -4414 2387 2225 218 333 51 0 chr3 87154906 87154984 -130882174 + L2 LINE L2 3230 3311 -2 325 217 50 106 chr3 87156131 87156311 -130880847 - MLT1J LTR MaLR -44 467 298 301 320 16 0 chr3 87156358 87156480 -130880678 - MLT1J LTR MaLR -351 160 37 1730 135 0 11 chr3 87156588 87156869 -130880289 - L1PA10 LINE L1 0 6168 5891 22 56 0 0 chr3 87157537 87157573 -130879585 + AT_rich Low_complexity Low_complexity 1 36 0 352 262 117 0 chr3 87158243 87158346 -130878812 - MIR3 SINE MIR -15 193 79 3230 55 0 0 chr3 87159548 87159945 -130877213 - L1PA8 LINE L1 -7 6165 5769 2471 79 0 13 chr3 87159946 87160261 -130876897 - AluY SINE Alu 0 311 1 391 297 86 31 chr3 87160933 87161061 -130876097 + L2 LINE L2 3138 3272 0 1671 154 21 28 chr3 87162070 87162356 -130874802 - AluJo SINE Alu -24 288 5 370 0 0 0 chr3 87162596 87162644 -130874514 + L1PA3 LINE L1 6108 6155 0 1281 96 0 22 chr3 87162646 87162824 -130874334 + AluY SINE Alu 130 303 -8 186 321 9 98 chr3 87163087 87163199 -130873959 + MIR SINE MIR 22 123 -85 459 206 18 148 chr3 87163669 87163892 -130873266 + MLT1A1 LTR MaLR 1 194 -171 530 57 0 114 chr3 87163933 87164021 -130873137 - MADE1 DNA Mariner 0 80 3 24 0 0 0 chr3 87164169 87164193 -130872965 + AT_rich Low_complexity Low_complexity 1 24 0 187 316 35 53 chr3 87164432 87164499 -130872659 + MIR SINE MIR 134 200 -62 2314 110 37 11 chr3 87164499 87164854 -130872304 + THE1B LTR MaLR 1 364 0 187 316 35 53 chr3 87164854 87164900 -130872258 + MIR SINE MIR 200 245 -17 369 206 0 0 chr3 87164913 87165015 -130872143 + (TGG)n Simple_repeat Simple_repeat 1 102 0 660 206 156 25 chr3 87165046 87165206 -130871952 - MER5A DNA MER1_type -6 183 3 22 56 0 0 chr3 87165238 87165274 -130871884 + AT_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr3 87166982 87167016 -130870142 + AT_rich Low_complexity Low_complexity 1 34 0 1121 253 58 41 chr3 87168081 87168492 -130868666 - LTR16C LTR ERVL -12 479 62 186 167 0 0 chr3 87168613 87168649 -130868509 + (TCTA)n Simple_repeat Simple_repeat 3 38 0 1368 152 82 15 chr3 87168649 87168919 -130868239 - L1MB4 LINE L1 -7 6173 5886 659 245 97 30 chr3 87169233 87169502 -130867656 - MER41E LTR ERV1 0 512 226 26 50 0 0 chr3 87169957 87169997 -130867161 + AT_rich Low_complexity Low_complexity 1 40 0 599 203 32 0 chr3 87171214 87171337 -130865821 - MER90 LTR ERV1 0 614 488 356 389 12 12 chr3 87172532 87172776 -130864382 + MIR SINE MIR 8 251 -11 3020 174 64 22 chr3 87172951 87173642 -130863516 + L1MB8 LINE L1 5402 6121 -57 1047 182 6 0 chr3 87174569 87174750 -130862408 - MER5A DNA MER1_type -3 186 5 2182 174 56 12 chr3 87176320 87176728 -130860430 - MSTB LTR MaLR 0 426 1 375 237 8 99 chr3 87176964 87177095 -130860063 + MLT1H LTR MaLR 65 167 -382 309 237 145 21 chr3 87177295 87177440 -130859718 + MLT1H LTR MaLR 383 563 -4 647 263 58 19 chr3 87178401 87178660 -130858498 + LTR37A LTR ERV1 47 315 -111 2133 167 8 16 chr3 87178701 87179085 -130858073 - MLT1B LTR MaLR 0 390 10 390 262 13 67 chr3 87179851 87180000 -130857158 + L2 LINE L2 3173 3313 0 270 336 17 17 chr3 87180002 87180121 -130857037 + MIR SINE MIR 97 215 -47 1853 216 106 42 chr3 87180197 87180284 -130856874 - LTR48B LTR ERV1 0 644 564 2288 109 7 0 chr3 87180284 87180586 -130856572 + AluSx SINE Alu 1 304 -8 1853 216 106 42 chr3 87180586 87181101 -130856057 - LTR48B LTR ERV1 -80 564 3 378 139 0 0 chr3 87181962 87182034 -130855124 + (CAGAGA)n Simple_repeat Simple_repeat 3 74 0 1909 187 10 89 chr3 87182991 87183505 -130853653 - MER74A LTR ERVL -69 489 17 288 154 0 0 chr3 87183514 87183566 -130853592 + (TA)n Simple_repeat Simple_repeat 2 53 0 634 324 98 9 chr3 87185705 87186069 -130851089 + L2 LINE L2 2714 3105 -208 40460 44 6 1 chr3 87186258 87192273 -130844885 + L1PA4 LINE L1 105 6147 -8 2159 221 53 2 chr3 87192284 87192846 -130844312 + L1ME1 LINE L1 5315 5905 -261 * 2883 202 55 56 chr3 87192841 87194107 -130843051 + L1MB8 LINE L1 4895 6163 -15 862 263 71 43 chr3 87194219 87194614 -130842544 - MLT1I LTR MaLR -3 406 1 549 252 58 58 chr3 87194614 87194871 -130842287 - MIR SINE MIR -4 258 1 257 267 17 0 chr3 87195588 87195648 -130841510 + L2 LINE L2 3205 3265 -7 209 250 28 14 chr3 87196879 87196951 -130840207 - MIR SINE MIR -7 255 183 292 333 0 0 chr3 87198005 87198080 -130839078 + MIR3 SINE MIR 82 156 -52 1695 137 53 27 chr3 87198327 87198627 -130838531 - AluY SINE Alu -3 308 1 2250 91 0 0 chr3 87198892 87199178 -130837980 + AluY SINE Alu 1 286 -25 588 254 0 8 chr3 87199313 87199447 -130837711 - FLAM_A SINE Alu -8 134 2 1759 224 31 12 chr3 87199972 87200391 -130836767 + MLT1C LTR MaLR 41 467 0 727 245 73 56 chr3 87201097 87201383 -130835775 - L2 LINE L2 0 3313 3023 1572 176 19 77 chr3 87201453 87201867 -130835291 + MLT1B LTR MaLR 1 390 0 1110 298 21 13 chr3 87202085 87202464 -130834694 + L2 LINE L2 2319 2700 -614 1026 179 14 19 chr3 87202465 87202677 -130834481 + MER89 LTR ERV1 349 559 0 284 233 23 35 chr3 87203269 87203355 -130833803 + MER103 DNA DNA 41 125 -41 646 295 36 18 chr3 87204183 87204407 -130832751 + MIR SINE MIR 16 243 -19 1344 143 12 219 chr3 87204545 87204970 -130832188 + MLT2B3 LTR ERVL 170 506 -9 21 0 0 0 chr3 87205368 87205389 -130831769 + AT_rich Low_complexity Low_complexity 1 21 0 3031 158 10 12 chr3 87205903 87206416 -130830742 + MER41E LTR ERV1 1 512 0 3623 125 12 5 chr3 87206490 87207051 -130830107 - MER34B LTR ERV1 0 565 1 22 0 0 0 chr3 87208181 87208203 -130828955 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 87209813 87209841 -130827317 + AT_rich Low_complexity Low_complexity 1 28 0 37 81 0 0 chr3 87209863 87209949 -130827209 + AT_rich Low_complexity Low_complexity 1 86 0 1053 261 49 71 chr3 87210474 87210965 -130826193 + MLT1E2 LTR MaLR 1 480 -146 1934 145 51 23 chr3 87211316 87211667 -130825491 + MER46B DNA MER2_type 1 236 0 282 314 95 9 chr3 87212184 87212289 -130824869 - MIR SINE MIR -78 130 17 371 269 50 8 chr3 87212629 87212748 -130824410 - MIR SINE MIR -109 153 30 520 273 97 0 chr3 87213429 87213583 -130823575 + MLT1E2 LTR MaLR 312 480 -146 183 172 0 0 chr3 87214455 87214484 -130822674 + MIR SINE MIR 30 58 -204 297 331 0 0 chr3 87214651 87214772 -130822386 + MER117 DNA MER1_type 10 130 -67 396 313 9 0 chr3 87214841 87214953 -130822205 - MIR3 SINE MIR -49 159 47 350 309 124 21 chr3 87215414 87215647 -130821511 + L2 LINE L2 2884 3140 -173 236 259 105 80 chr3 87215687 87215849 -130821309 + L2 LINE L2 3138 3303 -10 1027 257 5 0 chr3 87215916 87216138 -130821020 + MER58A DNA MER1_type 2 224 0 793 309 63 40 chr3 87216311 87216757 -130820401 - L2 LINE L2 -3 3310 2855 415 312 183 10 chr3 87217086 87217288 -130819870 + MIR SINE MIR 26 262 0 585 296 156 19 chr3 87217340 87217654 -130819504 - L3 LINE CR1 -128 1449 1093 328 254 17 25 chr3 87217676 87217794 -130819364 - HAL1b LINE L1 -511 837 721 395 369 80 16 chr3 87218142 87218456 -130818702 - L3 LINE CR1 -881 696 363 380 291 37 106 chr3 87218597 87218947 -130818211 + MLT1I LTR MaLR 78 403 -6 360 307 58 21 chr3 87219116 87219305 -130817853 + L2 LINE L2 3083 3278 -35 2211 150 20 60 chr3 87220639 87221085 -130816073 + MSTC LTR MaLR 1 428 0 249 170 19 19 chr3 87221106 87221159 -130815999 + MLT1E1 LTR MaLR 59 111 -543 1121 219 26 0 chr3 87221183 87221416 -130815742 + MLT1E2 LTR MaLR 388 626 0 183 333 115 60 chr3 87221565 87221817 -130815341 - L2 LINE L2 0 3272 3007 318 26 0 0 chr3 87222673 87222712 -130814446 + (CA)n Simple_repeat Simple_repeat 2 40 0 2204 193 38 2 chr3 87223156 87223608 -130813550 + LTR10B LTR ERV1 38 505 0 431 255 186 5 chr3 87223968 87224156 -130813002 - MIR SINE MIR -28 234 13 609 263 43 38 chr3 87224181 87224404 -130812754 + MIR SINE MIR 26 249 -13 354 350 0 10 chr3 87224743 87224846 -130812312 - MIR SINE MIR -160 102 1 21 36 0 0 chr3 87225544 87225572 -130811586 + AT_rich Low_complexity Low_complexity 1 28 0 548 258 41 36 chr3 87225741 87225935 -130811223 - MIR SINE MIR -66 196 2 306 73 0 0 chr3 87227050 87227091 -130810067 + (TC)n Simple_repeat Simple_repeat 2 42 0 360 0 0 0 chr3 87227091 87227131 -130810027 + (CA)n Simple_repeat Simple_repeat 1 40 0 434 349 92 5 chr3 87227220 87227438 -130809720 - MIR SINE MIR -6 256 20 1026 183 144 52 chr3 87227837 87228143 -130809015 + MLT1C LTR MaLR 134 467 0 435 236 0 121 chr3 87228819 87228976 -130808182 + L2 LINE L2 3175 3312 -1 25 0 0 0 chr3 87230926 87230951 -130806207 + AT_rich Low_complexity Low_complexity 1 25 0 788 321 98 27 chr3 87232603 87232720 -130804438 + L1MC4a LINE L1 5260 5367 -2441 1903 93 8 0 chr3 87232720 87232994 -130804164 + AluSc SINE Alu 33 308 0 788 321 98 27 chr3 87232994 87233495 -130803663 + L1MC4a LINE L1 5367 5923 -1885 226 361 72 6 chr3 87234012 87234178 -130802980 + L2 LINE L2 3119 3295 -18 334 267 53 61 chr3 87234328 87234459 -130802699 + MER5B DNA MER1_type 1 130 -48 2778 13 0 0 chr3 87234661 87234964 -130802194 - AluYb8 SINE Alu 0 318 16 413 296 62 17 chr3 87235061 87235240 -130801918 - MLT1K LTR MaLR -15 573 387 246 148 56 0 chr3 87235286 87235340 -130801818 - MLT1L LTR MaLR -212 403 347 1357 220 80 35 chr3 87235582 87235773 -130801385 - MER63B DNA MER1_type -631 431 250 1192 210 5 5 chr3 87235773 87235997 -130801161 + MER58A DNA MER1_type 1 224 0 1357 220 80 35 chr3 87235997 87236182 -130800976 - MER63B DNA MER1_type -812 250 38 293 206 110 0 chr3 87237429 87237502 -130799656 - L2 LINE L2 0 3272 3192 22 56 0 0 chr3 87239751 87239787 -130797371 + AT_rich Low_complexity Low_complexity 1 36 0 245 216 31 82 chr3 87240203 87240300 -130796858 - L1ME3A LINE L1 -111 6128 6037 464 236 135 25 chr3 87240646 87240883 -130796275 - HAL1 LINE L1 -1448 1059 797 1128 210 24 17 chr3 87243063 87243354 -130793804 - L1ME3A LINE L1 -899 5316 5024 212 237 0 0 chr3 87243368 87243406 -130793752 - L2 LINE L2 -19 3253 3216 722 312 21 4 chr3 87243516 87243753 -130793405 - MIR SINE MIR -2 260 20 2070 154 67 42 chr3 87243804 87244238 -130792920 + L1MB8 LINE L1 5733 6177 -1 23 33 0 0 chr3 87244571 87244601 -130792557 + AT_rich Low_complexity Low_complexity 1 30 0 1991 159 7 45 chr3 87245493 87245896 -130791262 - MLT1B LTR MaLR 0 390 3 261 0 0 0 chr3 87246046 87246075 -130791083 + (CA)n Simple_repeat Simple_repeat 2 30 0 279 125 42 0 chr3 87246075 87246147 -130791011 + GA-rich Low_complexity Low_complexity 1 75 0 650 182 57 6 chr3 87246497 87246656 -130790502 - L1ME3A LINE L1 -1386 4829 4663 2838 248 43 61 chr3 87246706 87247688 -130789470 - L1ME3A LINE L1 -5426 970 7 608 295 66 37 chr3 87248462 87248706 -130788452 + MIR SINE MIR 1 251 -11 432 289 48 18 chr3 87248954 87249120 -130788038 + Charlie8 DNA MER1_type 105 275 -2142 673 315 80 13 chr3 87249490 87249804 -130787354 + MLT1J LTR MaLR 163 497 -14 229 222 0 56 chr3 87249949 87250003 -130787155 - MLT1I LTR MaLR -260 149 99 2002 136 19 48 chr3 87250448 87250823 -130786335 + THE1B LTR MaLR 1 364 0 499 291 41 6 chr3 87250823 87250995 -130786163 - MIR SINE MIR -4 258 81 1762 216 23 36 chr3 87251107 87251584 -130785574 - L1M4 LINE L1 -1637 4509 4039 2129 88 7 7 chr3 87251695 87251980 -130785178 + AluY SINE Alu 3 287 -24 21 0 0 0 chr3 87251981 87252002 -130785156 + AT_rich Low_complexity Low_complexity 1 21 0 285 309 32 0 chr3 87252569 87252663 -130784495 - MIR SINE MIR -75 187 91 386 211 14 0 chr3 87252773 87252844 -130784314 - MLT1I LTR MaLR 0 409 338 269 262 33 129 chr3 87254079 87254350 -130782808 - L2 LINE L2 0 3313 3069 220 303 24 9 chr3 87254543 87254652 -130782506 + MIR SINE MIR 2 140 -68 471 298 30 60 chr3 87254659 87254894 -130782264 - LTR33 LTR ERVL 0 521 294 311 341 138 0 chr3 87255039 87255206 -130781952 - LTR33 LTR ERVL -314 207 18 209 278 14 14 chr3 87255214 87255286 -130781872 + MIR SINE MIR 142 213 -49 414 281 129 24 chr3 87255742 87255952 -130781206 + L2 LINE L2 2512 2743 -571 268 218 23 11 chr3 87256051 87256138 -130781020 + CT-rich Low_complexity Low_complexity 1 88 0 346 317 156 11 chr3 87256162 87256348 -130780810 + MIR SINE MIR 47 259 -3 456 338 103 13 chr3 87257150 87257384 -130779774 + MIR SINE MIR 2 256 -6 26 50 0 0 chr3 87259307 87259347 -130777811 + AT_rich Low_complexity Low_complexity 1 40 0 2325 109 0 0 chr3 87259685 87259987 -130777171 + AluSg SINE Alu 1 302 -8 21 0 0 0 chr3 87260058 87260079 -130777079 + AT_rich Low_complexity Low_complexity 1 21 0 237 178 0 0 chr3 87261846 87261891 -130775267 + (CA)n Simple_repeat Simple_repeat 1 45 0 201 39 0 0 chr3 87261963 87261989 -130775169 + (CA)n Simple_repeat Simple_repeat 2 27 0 215 276 13 13 chr3 87263712 87263788 -130773370 + (TAA)n Simple_repeat Simple_repeat 1 76 0 183 80 0 0 chr3 87263949 87263974 -130773184 + (CATATA)n Simple_repeat Simple_repeat 4 28 0 344 77 19 0 chr3 87263975 87264027 -130773131 + (TG)n Simple_repeat Simple_repeat 2 54 0 181 140 0 60 chr3 87264284 87264334 -130772824 + (TTTTC)n Simple_repeat Simple_repeat 2 48 0 183 80 0 0 chr3 87265048 87265073 -130772085 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 267 278 139 14 chr3 87265457 87265601 -130771557 + MIR SINE MIR 91 252 -10 219 69 0 0 chr3 87265604 87265633 -130771525 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 323 322 35 0 chr3 87265658 87265745 -130771413 - L2 LINE L2 -38 3275 3186 515 312 131 53 chr3 87265848 87266207 -130770951 + MER115 DNA AcHobo 45 431 -262 293 342 122 7 chr3 87266305 87266567 -130770591 - L2 LINE L2 -253 3060 2770 519 251 147 19 chr3 87267092 87267303 -130769855 + MIR SINE MIR 10 247 -15 201 255 21 0 chr3 87267375 87267422 -130769736 - MIR3 SINE MIR -53 155 108 498 243 33 50 chr3 87268842 87269023 -130768135 - MIR SINE MIR -55 207 30 195 100 0 0 chr3 87269082 87269112 -130768046 + (T)n Simple_repeat Simple_repeat 1 30 0 1156 187 43 0 chr3 87269446 87269655 -130767503 + AluJo SINE Alu 1 218 -94 200 167 21 0 chr3 87270257 87270305 -130766853 + (CAT)n Simple_repeat Simple_repeat 2 50 0 381 291 101 13 chr3 87270584 87270821 -130766337 + L1ME LINE L1 5121 5378 -768 21 0 0 0 chr3 87270821 87270842 -130766316 + AT_rich Low_complexity Low_complexity 1 21 0 279 309 27 13 chr3 87270994 87271143 -130766015 + L1ME LINE L1 5569 5719 -402 1683 122 107 9 chr3 87271759 87272087 -130765071 - L1MB2 LINE L1 -4 6167 5808 27 0 0 0 chr3 87272147 87272174 -130764984 + AT_rich Low_complexity Low_complexity 1 27 0 760 220 38 32 chr3 87274028 87274214 -130762944 - MER5A DNA MER1_type -2 187 1 361 173 37 0 chr3 87274420 87274501 -130762657 + L2 LINE L2 2563 2646 -668 23 33 0 0 chr3 87274745 87274775 -130762383 + AT_rich Low_complexity Low_complexity 1 30 0 3740 170 48 12 chr3 87274819 87275566 -130761592 + L1MB8 LINE L1 5405 6178 0 22 70 0 0 chr3 87276052 87276095 -130761063 + AT_rich Low_complexity Low_complexity 1 43 0 1943 149 3 0 chr3 87276429 87276717 -130760441 + AluSx SINE Alu 8 296 -16 1297 208 0 0 chr3 87276945 87277176 -130759982 + 7SLRNA srpRNA srpRNA 1 231 -89 46 78 0 0 chr3 87277243 87277345 -130759813 + AT_rich Low_complexity Low_complexity 1 102 0 336 344 49 6 chr3 87277483 87277666 -130759492 + Charlie8 DNA MER1_type 75 265 -2152 462 301 32 16 chr3 87277798 87278084 -130759074 + MLT1J1 LTR MaLR 1 337 -109 1094 198 5 40 chr3 87278417 87278639 -130758519 + AluJb SINE Alu 74 287 -25 7999 110 21 22 chr3 87278639 87279897 -130757261 - HSMAR2 DNA Mariner -43 1259 3 270 263 0 38 chr3 87279940 87280020 -130757138 - MLT1K LTR MaLR -53 535 459 229 255 20 0 chr3 87280179 87280230 -130756928 - MLT1K LTR MaLR -340 248 197 21 36 0 0 chr3 87280517 87280545 -130756613 + AT_rich Low_complexity Low_complexity 1 28 0 317 281 67 10 chr3 87280574 87280709 -130756449 - MIR SINE MIR -66 142 16 268 237 58 43 chr3 87282057 87282196 -130754962 - LTR67 LTR ERVL -4 553 413 265 323 10 0 chr3 87283387 87283486 -130753672 + CT-rich Low_complexity Low_complexity 1 100 0 878 245 30 0 chr3 87283819 87284019 -130753139 + MER58A DNA MER1_type 11 216 -8 241 250 0 33 chr3 87284284 87284344 -130752814 - L3 LINE CR1 -4 1573 1516 21 0 0 0 chr3 87284410 87284431 -130752727 + AT_rich Low_complexity Low_complexity 1 21 0 2250 84 0 11 chr3 87284696 87285029 -130752129 - AluY SINE Alu 0 330 1 208 288 198 58 chr3 87286083 87286361 -130750797 + L2 LINE L2 2997 3313 0 424 209 20 45 chr3 87287934 87288182 -130748976 + L1ME LINE L1 5416 5717 -404 223 186 0 29 chr3 87288188 87288258 -130748900 + (TA)n Simple_repeat Simple_repeat 1 68 0 299 278 14 0 chr3 87288271 87288343 -130748815 - L2 LINE L2 -689 2625 2553 2065 122 3 3 chr3 87288524 87288818 -130748340 - AluSx SINE Alu -15 297 4 21 0 0 0 chr3 87289569 87289590 -130747568 + AT_rich Low_complexity Low_complexity 1 21 0 353 303 49 14 chr3 87289956 87290098 -130747060 - MIR SINE MIR -12 250 104 365 366 12 12 chr3 87290325 87290489 -130746669 + MIR3 SINE MIR 28 191 -17 337 282 35 21 chr3 87290820 87290962 -130746196 - MLT1K LTR MaLR -9 579 436 253 353 32 32 chr3 87291098 87291319 -130745839 - MLT1K LTR MaLR -357 231 11 291 200 84 32 chr3 87291412 87291507 -130745651 - MIR3 SINE MIR -6 202 103 256 315 49 63 chr3 87293127 87293270 -130743888 + MIR SINE MIR 1 141 -121 299 309 53 39 chr3 87293369 87293576 -130743582 + MLT1J LTR MaLR 72 281 -230 330 268 68 5 chr3 87293686 87293926 -130743232 - L1MEc LINE L1 -3821 2394 2177 1846 152 149 11 chr3 87293991 87294367 -130742791 + MSTA LTR MaLR 1 428 0 373 267 85 24 chr3 87294402 87294567 -130742591 - MIR SINE MIR -2 260 86 404 312 67 11 chr3 87294886 87295155 -130742003 + HAL1 LINE L1 797 1080 -1427 314 307 73 57 chr3 87295211 87295455 -130741703 + HAL1 LINE L1 1338 1591 -916 1920 150 0 7 chr3 87295455 87295794 -130741364 + AluSx SINE Alu 1 337 0 314 307 73 57 chr3 87295794 87295864 -130741294 + HAL1 LINE L1 1591 1658 -849 1098 228 98 42 chr3 87295877 87296066 -130741092 + MLT1D LTR MaLR 6 183 -322 2749 6 3 10 chr3 87296066 87296379 -130740779 + AluYa5 SINE Alu 1 311 0 1098 228 98 42 chr3 87296379 87296641 -130740517 + MLT1D LTR MaLR 183 503 -2 370 269 194 0 chr3 87296667 87296842 -130740316 + HAL1 LINE L1 1695 1903 -604 267 288 27 0 chr3 87296942 87297053 -130740105 + HAL1 LINE L1 2052 2165 -342 2528 141 51 0 chr3 87297229 87297640 -130739518 - MSTB1 LTR MaLR 0 432 1 296 225 14 0 chr3 87297831 87297902 -130739256 + HAL1 LINE L1 2244 2315 -192 414 0 0 0 chr3 87297984 87298030 -130739128 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 331 271 110 7 chr3 87298227 87298382 -130738776 + L1MCc LINE L1 24 194 -6229 847 118 0 31 chr3 87298459 87298586 -130738572 + FLAM_A SINE Alu 16 138 -4 231 317 111 34 chr3 87298591 87298853 -130738305 + L1MCc LINE L1 300 581 -5842 276 358 29 29 chr3 87298945 87299149 -130738009 + L1MCc LINE L1 815 1018 -5405 780 274 56 7 chr3 87299270 87299540 -130737618 + L1MCc LINE L1 1005 1287 -5136 378 312 101 11 chr3 87299652 87299841 -130737317 + MIR SINE MIR 13 218 -44 1350 240 52 79 chr3 87300009 87300714 -130736444 + MER20B DNA MER1_type 64 749 -34 2160 121 3 0 chr3 87300992 87301282 -130735876 - AluSx SINE Alu -21 291 1 1701 142 80 33 chr3 87302103 87302440 -130734718 + MSTB1 LTR MaLR 80 432 0 462 239 34 8 chr3 87302996 87303113 -130734045 - L2 LINE L2 -1 3312 3193 180 323 16 0 chr3 87303151 87303213 -130733945 - MIR SINE MIR -71 137 75 344 302 12 0 chr3 87304508 87304594 -130732564 + MIR SINE MIR 48 134 -128 583 299 36 23 chr3 87304816 87305037 -130732121 + MIR SINE MIR 31 254 -8 227 346 20 40 chr3 87305284 87305385 -130731773 - L2 LINE L2 -33 3239 3141 1491 191 114 36 chr3 87305722 87306188 -130730970 - Charlie4a DNA MER1_type -6 502 1 1527 217 52 5 chr3 87306326 87306531 -130730627 - MLT1B LTR MaLR -2 388 157 2110 103 0 44 chr3 87306531 87306852 -130730306 - AluSx SINE Alu -5 307 1 1527 217 52 5 chr3 87306852 87307015 -130730143 - MLT1B LTR MaLR -233 157 3 241 264 116 31 chr3 87307097 87307226 -130729932 + Charlie8 DNA MER1_type 46 185 -2232 2958 72 0 0 chr3 87308109 87308499 -130728659 - L1PA13 LINE L1 -6 6157 5768 335 232 27 27 chr3 87308539 87308651 -130728507 - L1MC4 LINE L1 -17 8025 7914 192 250 0 0 chr3 87308671 87308735 -130728423 + (TA)n Simple_repeat Simple_repeat 1 64 0 371 274 9 66 chr3 87309912 87310138 -130727020 + Charlie8 DNA MER1_type 43 255 -2162 588 275 52 48 chr3 87311641 87311870 -130725288 - MIR SINE MIR 0 262 33 304 328 121 0 chr3 87312322 87312438 -130724720 + L2 LINE L2 3178 3307 -6 207 206 79 48 chr3 87312662 87312725 -130724433 - MIR SINE MIR -10 252 188 462 267 189 0 chr3 87313660 87313840 -130723318 + MIR SINE MIR 4 217 -45 301 276 0 11 chr3 87313950 87314037 -130723121 + (TA)n Simple_repeat Simple_repeat 1 86 0 477 310 110 10 chr3 87314042 87314242 -130722916 + MIR SINE MIR 37 256 -6 24 32 0 0 chr3 87314721 87314752 -130722406 + AT_rich Low_complexity Low_complexity 1 31 0 9051 27 2 0 chr3 87315387 87316858 -130720300 - L1P1 LINE L1 -417 5738 4265 3261 24 0 0 chr3 87316858 87317233 -130719925 + L1PA3 LINE L1 5774 6150 -5 1994 126 13 0 chr3 87417927 87418229 -130618929 - AluY SINE Alu -5 306 1 1650 174 0 30 chr3 87418233 87418537 -130618621 - AluJo SINE Alu -6 306 12 1232 157 5 22 chr3 87418937 87419160 -130617998 + MER20 DNA MER1_type 1 219 0 390 277 92 31 chr3 87419298 87419428 -130617730 - MER91C DNA MER1_type -2 138 1 247 294 119 60 chr3 87420220 87420438 -130616720 + MLT1K LTR MaLR 33 263 -325 1378 184 31 41 chr3 87420719 87421013 -130616145 - AluJo SINE Alu -16 296 6 357 252 40 6 chr3 87421037 87421125 -130616033 - AluJ/FLAM SINE Alu -227 75 1 1547 204 42 73 chr3 87421137 87421228 -130615930 + MLT1C LTR MaLR 3 95 -372 2278 103 3 0 chr3 87421228 87421538 -130615620 + AluSp SINE Alu 1 311 -2 1547 204 42 73 chr3 87421538 87421926 -130615232 + MLT1C LTR MaLR 95 467 0 2348 76 7 0 chr3 87421930 87422234 -130614924 - AluY SINE Alu -5 306 1 1029 191 98 8 chr3 87422520 87422766 -130614392 + MLT1E1 LTR MaLR 3 270 -384 2121 106 0 0 chr3 87422796 87423103 -130614055 - AluSx SINE Alu 0 307 1 1147 206 28 16 chr3 87423123 87423370 -130613788 + MLT1E1 LTR MaLR 405 654 0 2111 130 0 0 chr3 87423413 87423714 -130613444 - AluSx SINE Alu -11 301 1 43074 58 3 4 chr3 87424134 87430296 -130606862 - L1PA5 LINE L1 0 6154 1 301 249 102 9 chr3 87430403 87430532 -130606626 + L2 LINE L2 2916 3066 -247 394 332 65 13 chr3 87430685 87430917 -130606241 - L2 LINE L2 -361 2953 2710 1845 162 0 6 chr3 87430991 87431305 -130605853 - AluSx SINE Alu 0 312 1 1200 191 25 39 chr3 87431330 87431612 -130605546 + AluJo SINE Alu 1 278 -34 583 208 39 0 chr3 87432125 87432255 -130604903 + L1MB4 LINE L1 6046 6180 0 2150 116 0 0 chr3 87432262 87432556 -130604602 + AluSx SINE Alu 1 294 -18 1905 120 3 42 chr3 87432717 87433026 -130604132 + AluJb SINE Alu 5 301 -11 1342 191 29 18 chr3 87433195 87433473 -130603685 + AluJo SINE Alu 2 282 -30 1382 205 36 44 chr3 87433486 87433847 -130603311 - L1MB5 LINE L1 -4 6170 5813 322 244 8 59 chr3 87433858 87433977 -130603181 + MER58C DNA MER1_type 103 215 0 254 268 125 27 chr3 87434362 87434474 -130602684 + MIR SINE MIR 3 125 -137 642 223 54 24 chr3 87434726 87434892 -130602266 + MLT1I LTR MaLR 232 402 -7 2054 118 20 0 chr3 87435658 87435962 -130601196 - AluSx SINE Alu -2 310 1 245 203 63 38 chr3 87436384 87436453 -130600705 - MLT1K LTR MaLR -1 587 517 1119 295 15 27 chr3 87436453 87436785 -130600373 - LTR16C LTR ERVL 0 491 164 1905 135 6 10 chr3 87436790 87437101 -130600057 - AluSg SINE Alu 0 310 1 320 285 49 75 chr3 87437251 87437518 -130599640 - MLT1K LTR MaLR -149 439 180 1164 72 4 1 chr3 87437718 87437968 -130599190 + AluSg SINE Alu 10 295 -15 453 45 0 0 chr3 87438076 87438143 -130599015 - L1HS LINE L1 0 6155 6089 315 0 0 0 chr3 87438338 87438373 -130598785 + (TG)n Simple_repeat Simple_repeat 1 35 0 440 246 66 12 chr3 87438373 87438541 -130598617 + MLT1H LTR MaLR 12 193 -356 279 139 0 0 chr3 87438541 87438584 -130598574 + MER4A LTR ERV1 2 44 -620 620 65 0 0 chr3 87438585 87438662 -130598496 + AluS SINE Alu 2 78 -234 1762 107 11 26 chr3 87438662 87438933 -130598225 + AluSx SINE Alu 29 295 -17 434 121 0 15 chr3 87438934 87439000 -130598158 + MER4A LTR ERV1 34 98 -566 1788 111 174 92 chr3 87439000 87439368 -130597790 + MER4A LTR ERV1 261 658 -6 348 261 199 24 chr3 87439524 87439735 -130597423 + MLT1H LTR MaLR 348 595 0 2194 101 3 0 chr3 87440356 87440653 -130596505 + AluSp SINE Alu 3 300 -13 4373 64 2 5 chr3 87440909 87441469 -130595689 - LTR6B LTR ERV1 0 558 1 2228 117 0 3 chr3 87441469 87441786 -130595372 - HERVS71 LTR ERV1 -69 8909 8594 * 6709 145 2 0 chr3 87441783 87442765 -130594393 - HERVS71 LTR ERV1 -1192 7786 6803 6310 133 18 0 chr3 87442762 87444401 -130592757 - HERVS71 LTR ERV1 -2375 6603 4870 * 22366 132 22 3 chr3 87444410 87447582 -130589576 - HERVS71 LTR ERV1 -5742 3236 4 4094 91 14 4 chr3 87447584 87448136 -130589022 - LTR6B LTR ERV1 0 558 1 214 313 117 11 chr3 87448143 87448322 -130588836 - L3 LINE CR1 -200 1377 1180 1075 190 5 46 chr3 87448345 87448444 -130588714 - MER58A DNA MER1_type -2213 207 105 2472 141 78 0 chr3 87448444 87448841 -130588317 + MSTA LTR MaLR 1 428 0 1075 190 5 46 chr3 87448841 87448957 -130588201 - MER58A DNA MER1_type -2315 105 1 2078 126 10 3 chr3 87448997 87449307 -130587851 - AluSq SINE Alu -1 312 1 883 119 8 0 chr3 87449307 87449433 -130587725 - AluSq/x SINE Alu -177 135 9 230 370 20 34 chr3 87449457 87449603 -130587555 - L3 LINE CR1 -381 1196 1053 1089 124 26 31 chr3 87449868 87450062 -130587096 + HERVH LTR ERV1 3801 3993 -3720 4364 153 1 1 chr3 87450064 87450723 -130586435 + HERVH LTR ERV1 4488 5146 -2567 1267 142 42 5 chr3 87450727 87450939 -130586219 + HERVH LTR ERV1 5600 5819 -1894 2259 143 48 13 chr3 87450939 87451316 -130585842 + HERVH LTR ERV1 7324 7713 0 2406 113 125 8 chr3 87451317 87451717 -130585441 + LTR7 LTR ERV1 2 448 -2 2204 100 3 0 chr3 87451729 87452030 -130585128 - AluSp SINE Alu -9 304 3 602 221 55 33 chr3 87452040 87452221 -130584937 - MLT1D LTR MaLR -320 185 1 288 339 25 17 chr3 87453404 87453522 -130583636 - L2 LINE L2 -15 3298 3180 1773 141 6 63 chr3 87453560 87453879 -130583279 + AluSx SINE Alu 1 301 -11 222 37 0 0 chr3 87454164 87454191 -130582967 + (CAT)n Simple_repeat Simple_repeat 3 29 0 753 152 80 8 chr3 87454301 87454426 -130582732 + THE1B LTR MaLR 196 329 -35 199 176 0 0 chr3 87454700 87454734 -130582424 + L2 LINE L2 3019 3052 -261 2271 91 0 3 chr3 87454975 87455282 -130581876 - AluY SINE Alu -4 307 2 450 94 0 0 chr3 87455427 87455491 -130581667 + (GA)n Simple_repeat Simple_repeat 1 64 0 2004 131 3 0 chr3 87455807 87456098 -130581060 - AluSg SINE Alu -18 292 1 1168 167 14 28 chr3 87456163 87456379 -130580779 + MER73 LTR ERVL 432 644 0 196 255 0 0 chr3 87456864 87456915 -130580243 - MER5B DNA MER1_type -81 97 47 932 144 0 0 chr3 87456921 87457053 -130580105 + FLAM_A SINE Alu 1 132 -1 254 200 19 45 chr3 87457110 87457176 -130579982 + MLT1F LTR MaLR 1 55 -487 * 401 216 0 0 chr3 87457175 87457249 -130579909 - MER66B LTR ERV1 -412 74 1 848 154 0 8 chr3 87457610 87457740 -130579418 + FLAM_C SINE Alu 1 129 -4 232 24 49 24 chr3 87457912 87457953 -130579205 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 1499 172 29 4 chr3 87457953 87458226 -130578932 - AluSx SINE Alu -32 280 1 427 247 20 99 chr3 87458949 87459073 -130578085 + MER5B DNA MER1_type 3 140 -49 1776 180 0 0 chr3 87459073 87459384 -130577774 - AluJo SINE Alu -1 311 1 427 247 20 99 chr3 87459384 87459431 -130577727 + MER5B DNA MER1_type 140 189 0 357 252 28 22 chr3 87459445 87459594 -130577564 - MER5A DNA MER1_type 0 178 30 211 260 65 65 chr3 87459491 87459614 -130577544 + MER5A DNA MER1_type 60 182 -7 * 1262 227 108 35 chr3 87460002 87460078 -130577080 + MLT1C LTR MaLR 6 75 -392 1938 144 3 0 chr3 87460078 87460370 -130576788 + AluSx SINE Alu 5 297 -15 1262 227 108 35 chr3 87460370 87460721 -130576437 + MLT1C LTR MaLR 75 464 -3 2108 120 0 0 chr3 87460762 87461053 -130576105 + AluSp SINE Alu 1 291 -22 1978 113 6 44 chr3 87461278 87461597 -130575561 + AluSq SINE Alu 1 307 -6 262 246 18 0 chr3 87461778 87461835 -130575323 + AluJo SINE Alu 1 58 -244 3810 133 105 50 chr3 87461867 87462313 -130574845 + LTR1 LTR ERV1 1 506 -279 1799 87 0 4 chr3 87462313 87462543 -130574615 + AluY SINE Alu 16 244 -67 3810 133 105 50 chr3 87462543 87462840 -130574318 + LTR1 LTR ERV1 506 785 0 1375 144 0 88 chr3 87462843 87463127 -130574031 + AluJo SINE Alu 41 299 -13 1677 170 3 16 chr3 87463678 87463984 -130573174 + AluSx SINE Alu 1 302 -10 534 16 0 0 chr3 87463993 87464056 -130573102 + (CA)n Simple_repeat Simple_repeat 2 64 0 1754 196 0 0 chr3 87464174 87464485 -130572673 - AluJo SINE Alu -1 311 1 495 279 82 13 chr3 87465007 87465165 -130571993 + MIR SINE MIR 79 247 -15 352 275 77 0 chr3 87465194 87465285 -130571873 + L2 LINE L2 3162 3259 -13 497 310 24 11 chr3 87465677 87465855 -130571303 + MIR SINE MIR 42 224 -38 2270 101 0 0 chr3 87465870 87466177 -130570981 + AluSq SINE Alu 1 307 -6 3270 125 68 6 chr3 87466265 87466761 -130570397 + MER1A DNA MER1_type 1 527 0 766 191 9 91 chr3 87466781 87466932 -130570226 + MER3 DNA MER1_type 8 137 -72 2064 125 3 0 chr3 87466932 87467228 -130569930 - AluSx SINE Alu -15 297 1 766 191 9 91 chr3 87467228 87467296 -130569862 + MER3 DNA MER1_type 137 209 0 765 265 94 8 chr3 87467445 87467679 -130569479 - MIR SINE MIR -6 256 3 195 100 0 0 chr3 87469678 87469708 -130567450 + (TG)n Simple_repeat Simple_repeat 1 30 0 2046 133 0 3 chr3 87470281 87470590 -130566568 + AluSg SINE Alu 1 308 -2 306 277 50 75 chr3 87470651 87470810 -130566348 - L2 LINE L2 0 3313 3159 1040 215 125 0 chr3 87470969 87471225 -130565933 - LTR16A1 LTR ERVL 0 457 170 454 243 181 0 chr3 87471824 87471968 -130565190 - MIR SINE MIR -73 189 20 1354 174 72 8 chr3 87471980 87472245 -130564913 - AluJo SINE Alu -30 282 1 573 83 0 0 chr3 87472255 87472327 -130564831 - Alu SINE Alu -15 295 224 448 290 21 42 chr3 87472509 87472702 -130564456 - MLT1K LTR MaLR -302 286 98 932 127 7 0 chr3 87472895 87473037 -130564121 + AluSp/q SINE Alu 159 301 -12 1286 161 24 47 chr3 87473132 87473281 -130563877 + AluJo SINE Alu 1 152 -160 1540 201 0 6 chr3 87473281 87473594 -130563564 + AluJo SINE Alu 1 311 -1 285 29 0 0 chr3 87473594 87473628 -130563530 + (TA)n Simple_repeat Simple_repeat 2 35 0 1286 161 24 47 chr3 87473628 87473731 -130563427 + AluJo SINE Alu 150 248 -64 253 223 0 43 chr3 87473746 87473840 -130563318 + L1MC4 LINE L1 6614 6703 -1339 593 250 50 12 chr3 87473894 87474054 -130563104 + MER104 DNA Tc2 11 176 -4 2180 98 0 0 chr3 87474932 87475219 -130561939 + AluSx SINE Alu 1 287 -25 621 0 0 0 chr3 87475219 87475288 -130561870 + (TATAA)n Simple_repeat Simple_repeat 4 72 0 246 62 0 0 chr3 87475287 87475319 -130561839 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 * 1527 196 3 22 chr3 87475457 87475774 -130561384 + AluJo SINE Alu 1 311 -1 268 310 69 0 chr3 87475843 87475930 -130561228 - MIR SINE MIR -74 188 96 1387 180 0 16 chr3 87475950 87476200 -130560958 + AluJb SINE Alu 1 246 -66 2423 160 48 14 chr3 87476200 87476637 -130560521 + MER66B LTR ERV1 1 452 -34 4211 116 107 111 chr3 87476637 87478038 -130559120 + pTR5 LTR ERV1 589 2438 0 344 152 0 45 chr3 87478057 87478123 -130559035 + AluJb SINE Alu 238 300 -2 2220 161 65 57 chr3 87478256 87478492 -130558666 + L1MB7 LINE L1 5670 5903 -281 351 0 0 0 chr3 87478492 87478531 -130558627 + (TA)n Simple_repeat Simple_repeat 1 39 0 2220 161 65 57 chr3 87478531 87478734 -130558424 + L1MB7 LINE L1 5903 6116 -68 1679 176 0 7 chr3 87478734 87479030 -130558128 - AluJb SINE Alu -18 294 1 2220 161 65 57 chr3 87479030 87479100 -130558058 + L1MB7 LINE L1 6116 6184 0 1505 189 0 27 chr3 87479127 87479246 -130557912 + AluJb SINE Alu 18 139 -173 1609 138 67 27 chr3 87479246 87479543 -130557615 + AluSx SINE Alu 1 309 -3 1505 189 0 27 chr3 87479543 87479719 -130557439 + AluJb SINE Alu 139 305 -7 2165 78 0 17 chr3 87479833 87480126 -130557032 + AluSx SINE Alu 1 288 -24 1992 120 7 10 chr3 87480763 87481064 -130556094 - AluSx SINE Alu -12 300 1 1421 171 49 59 chr3 87481261 87481565 -130555593 + AluJo SINE Alu 1 301 -11 647 251 96 27 chr3 87481725 87481944 -130555214 + MIR SINE MIR 29 262 0 602 160 0 20 chr3 87482169 87482269 -130554889 - AluS SINE Alu -214 99 2 546 162 26 91 chr3 87482274 87482428 -130554730 - MLT1C LTR MaLR -286 181 38 1531 166 40 13 chr3 87482443 87482745 -130554413 - AluJo SINE Alu -2 310 1 2186 111 7 0 chr3 87483405 87483693 -130553465 + AluSc SINE Alu 1 290 -19 2339 89 3 7 chr3 87483787 87484091 -130553067 + AluSq SINE Alu 1 303 -10 340 317 71 33 chr3 87485135 87485318 -130551840 + L2 LINE L2 3121 3310 -3 218 191 12 60 chr3 87485853 87485937 -130551221 + C-rich Low_complexity Low_complexity 6 85 0 214 301 18 36 chr3 87486300 87486466 -130550692 + C-rich Low_complexity Low_complexity 4 166 0 193 125 0 50 chr3 87487477 87487517 -130549641 - MIR SINE MIR -88 174 137 841 229 65 0 chr3 87487546 87487760 -130549398 + MIR SINE MIR 13 240 -22 834 272 89 28 chr3 87487781 87488264 -130548894 - L2 LINE L2 -1 3312 2777 2168 116 3 0 chr3 87489699 87489993 -130547165 + AluSx SINE Alu 1 295 -17 223 292 26 24 chr3 87490098 87490238 -130546920 + L2 LINE L2 2842 2977 -336 398 274 185 10 chr3 87490940 87491254 -130545904 + LTR33A LTR ERVL 139 507 -16 2111 139 10 0 chr3 87491267 87491576 -130545582 - AluSx SINE Alu 0 312 1 641 192 32 8 chr3 87492102 87492227 -130544931 - FLAM_A SINE Alu -5 128 1 294 304 74 63 chr3 87492517 87492671 -130544487 + MIR SINE MIR 26 177 -68 2092 97 52 14 chr3 87492748 87492881 -130544277 + AluSx SINE Alu 1 127 -185 2221 127 0 0 chr3 87492881 87493181 -130543977 + AluSq SINE Alu 1 300 -13 2092 97 52 14 chr3 87493181 87493337 -130543821 + AluSx SINE Alu 127 301 -11 564 268 78 0 chr3 87493408 87493587 -130543571 - L1MD2 LINE L1 -365 5994 5802 182 281 62 16 chr3 87495387 87495451 -130541707 + MIR SINE MIR 81 147 -115 201 336 138 0 chr3 87495605 87495721 -130541437 - MIR SINE MIR -32 230 99 1754 177 3 16 chr3 87496013 87496329 -130540829 + AluJb SINE Alu 1 312 0 2033 145 3 10 chr3 87496434 87496738 -130540420 - AluSx SINE Alu -10 302 1 580 200 9 0 chr3 87496785 87496890 -130540268 + FLAM_A SINE Alu 18 123 -19 1122 110 12 0 chr3 87496969 87497142 -130540016 - MER30 DNA MER1_type -55 175 1 1930 131 13 52 chr3 87497276 87497582 -130539576 + AluSx SINE Alu 5 298 -14 1067 157 58 0 chr3 87497622 87497813 -130539345 + AluJo SINE Alu 106 307 -5 414 0 0 0 chr3 87497875 87497921 -130539237 + (TG)n Simple_repeat Simple_repeat 2 47 0 1625 202 0 3 chr3 87497925 87498207 -130538951 - AluSx SINE Alu -31 281 1 310 301 23 64 chr3 87498218 87498484 -130538674 - L1MC5 LINE L1 -44 7917 7663 397 301 144 0 chr3 87498559 87498712 -130538446 - MER5A DNA MER1_type 0 189 15 618 250 166 9 chr3 87498909 87498974 -130538184 - MLT1D LTR MaLR 0 505 452 1946 164 3 7 chr3 87498974 87499279 -130537879 + AluSx SINE Alu 1 304 -8 618 250 166 9 chr3 87499279 87499451 -130537707 - MLT1D LTR MaLR -53 452 206 1852 95 36 8 chr3 87499493 87499842 -130537316 + LTR7 LTR ERV1 1 448 -2 18871 99 40 21 chr3 87499844 87502780 -130534378 + HERVH LTR ERV1 1 2992 -4721 5699 101 8 2 chr3 87502766 87503615 -130533543 + HERVH LTR ERV1 3140 3993 -3720 * 4226 147 1 1 chr3 87503617 87504276 -130532882 + HERVH LTR ERV1 4488 5146 -2567 1255 123 42 5 chr3 87504280 87504492 -130532666 + HERVH LTR ERV1 5600 5819 -1894 2242 106 48 13 chr3 87504492 87504869 -130532289 + HERVH LTR ERV1 7324 7713 0 2403 92 125 8 chr3 87504870 87505270 -130531888 + LTR7 LTR ERV1 2 448 -2 2353 100 3 0 chr3 87505282 87505583 -130531575 - AluSp SINE Alu -9 304 3 571 221 55 33 chr3 87505593 87505774 -130531384 - MLT1D LTR MaLR -320 185 1 270 339 25 17 chr3 87506958 87507076 -130530082 - L2 LINE L2 -15 3298 3180 1842 151 6 68 chr3 87507114 87507438 -130529720 + AluSx SINE Alu 1 304 -8 222 37 0 0 chr3 87507721 87507748 -130529410 + (CAT)n Simple_repeat Simple_repeat 3 29 0 714 152 80 8 chr3 87507858 87507983 -130529175 + THE1B LTR MaLR 196 329 -35 191 176 0 0 chr3 87508257 87508291 -130528867 + L2 LINE L2 3019 3052 -261 2417 94 0 3 chr3 87508532 87508839 -130528319 - AluY SINE Alu -4 307 2 450 94 0 0 chr3 87508984 87509048 -130528110 + (GA)n Simple_repeat Simple_repeat 1 64 0 2160 131 3 0 chr3 87509364 87509655 -130527503 - AluSg SINE Alu -18 292 1 1129 167 14 28 chr3 87509720 87509936 -130527222 + MER73 LTR ERVL 432 644 0 184 255 0 0 chr3 87510421 87510472 -130526686 - MER5B DNA MER1_type -81 97 47 891 144 0 0 chr3 87510478 87510610 -130526548 + FLAM_A SINE Alu 1 132 -1 243 200 19 45 chr3 87510667 87510733 -130526425 + MLT1F LTR MaLR 1 55 -487 * 391 216 0 0 chr3 87510732 87510806 -130526352 - MER66B LTR ERV1 -412 74 1 822 146 0 8 chr3 87511168 87511298 -130525860 + FLAM_C SINE Alu 1 129 -4 232 24 49 24 chr3 87511470 87511511 -130525647 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 1678 161 29 4 chr3 87511511 87511784 -130525374 - AluSx SINE Alu -32 280 1 401 246 20 99 chr3 87512507 87512631 -130524527 + MER5B DNA MER1_type 3 140 -49 1954 177 0 0 chr3 87512631 87512942 -130524216 - AluJo SINE Alu -1 311 1 401 246 20 99 chr3 87512942 87512989 -130524169 + MER5B DNA MER1_type 140 189 0 334 292 15 8 chr3 87513003 87513152 -130524006 - MER5A DNA MER1_type 0 178 30 192 325 32 32 chr3 87513049 87513172 -130523986 + MER5A DNA MER1_type 60 182 -7 * 1215 237 102 35 chr3 87513560 87513636 -130523522 + MLT1C LTR MaLR 6 75 -392 2091 144 3 0 chr3 87513636 87513928 -130523230 + AluSx SINE Alu 5 297 -15 1215 237 102 35 chr3 87513928 87514281 -130522877 + MLT1C LTR MaLR 75 464 -3 2146 134 0 3 chr3 87514322 87514620 -130522538 + AluSp SINE Alu 1 297 -16 2054 115 6 50 chr3 87514839 87515160 -130521998 + AluSq SINE Alu 1 307 -6 251 246 18 0 chr3 87515341 87515398 -130521760 + AluJo SINE Alu 1 58 -244 3602 134 103 48 chr3 87515430 87515876 -130521282 + LTR1 LTR ERV1 1 506 -279 1987 57 0 4 chr3 87515876 87516106 -130521052 + AluY SINE Alu 16 244 -67 3602 134 103 48 chr3 87516106 87516403 -130520755 + LTR1 LTR ERV1 506 785 0 1503 144 0 94 chr3 87516406 87516704 -130520454 + AluJo SINE Alu 41 310 -2 1932 144 3 16 chr3 87517243 87517549 -130519609 + AluSx SINE Alu 1 302 -10 534 16 0 0 chr3 87517558 87517621 -130519537 + (CA)n Simple_repeat Simple_repeat 2 64 0 1881 192 0 3 chr3 87517739 87518051 -130519107 - AluJo SINE Alu -1 311 1 471 279 82 13 chr3 87518574 87518732 -130518426 + MIR SINE MIR 79 247 -15 329 275 77 0 chr3 87518761 87518852 -130518306 + L2 LINE L2 3162 3259 -13 480 307 18 12 chr3 87519259 87519422 -130517736 + MIR SINE MIR 61 224 -38 2411 104 0 0 chr3 87519437 87519744 -130517414 + AluSq SINE Alu 1 307 -6 3099 125 68 6 chr3 87519832 87520328 -130516830 + MER1A DNA MER1_type 1 527 0 712 230 30 20 chr3 87520348 87520479 -130516679 + MER3 DNA MER1_type 8 143 -66 2210 127 3 19 chr3 87520479 87520795 -130516363 - AluSx SINE Alu -1 311 1 712 230 30 20 chr3 87520795 87520863 -130516295 + MER3 DNA MER1_type 143 209 0 693 242 95 0 chr3 87521012 87521202 -130515956 - MIR SINE MIR -6 256 49 195 100 0 0 chr3 87523246 87523276 -130513882 + (TG)n Simple_repeat Simple_repeat 1 30 0 2155 136 0 7 chr3 87523849 87524159 -130512999 + AluSg SINE Alu 1 308 -2 310 277 50 75 chr3 87524220 87524379 -130512779 - L2 LINE L2 0 3313 3159 977 231 125 0 chr3 87524538 87524794 -130512364 - LTR16A1 LTR ERVL 0 457 170 611 304 58 0 chr3 87525106 87525297 -130511861 + AluJo SINE Alu 106 307 -5 423 0 0 0 chr3 87525358 87525405 -130511753 + (TG)n Simple_repeat Simple_repeat 2 48 0 2121 120 3 0 chr3 87525405 87525689 -130511469 - AluSx SINE Alu -27 285 1 826 245 40 0 chr3 87527445 87527645 -130509513 + MER58A DNA MER1_type 1 208 -16 298 104 194 0 chr3 87528875 87528942 -130508216 + MADE1 DNA Mariner 1 80 0 633 125 0 10 chr3 87529477 87529601 -130507557 - AluSg/x SINE Alu 0 312 201 2086 88 4 15 chr3 87529602 87529907 -130507251 + AluSq SINE Alu 16 317 0 1697 159 32 11 chr3 87529986 87530269 -130506889 + AluSx SINE Alu 1 289 -23 1999 140 24 0 chr3 87531547 87531840 -130505318 + AluSx SINE Alu 1 300 -12 188 286 82 10 chr3 87531944 87532042 -130505116 + MIR SINE MIR 106 210 -52 2054 136 3 0 chr3 87532219 87532506 -130504652 - AluSx SINE Alu -14 298 11 243 333 0 0 chr3 87533342 87533411 -130503747 - L2 LINE L2 -52 3261 3193 907 206 72 0 chr3 87533607 87533816 -130503342 - MER58A DNA MER1_type 0 224 1 2510 73 0 0 chr3 87534620 87534921 -130502237 - AluY SINE Alu -10 301 1 2210 120 3 0 chr3 87535424 87535733 -130501425 - AluSx SINE Alu -2 310 1 2057 146 0 3 chr3 87535738 87536047 -130501111 - AluSq SINE Alu -5 308 1 22 0 0 0 chr3 87536051 87536073 -130501085 + AT_rich Low_complexity Low_complexity 1 22 0 947 205 42 69 chr3 87536116 87536448 -130500710 - MER33 DNA MER1_type -1 323 1 2209 139 19 27 chr3 87536885 87537096 -130500062 - THE1B LTR MaLR 0 364 156 1939 172 0 0 chr3 87537096 87537398 -130499760 + AluSx SINE Alu 1 302 -10 2209 139 19 27 chr3 87537398 87537553 -130499605 - THE1B LTR MaLR -208 156 1 279 287 27 55 chr3 87537593 87537744 -130499414 - MIR SINE MIR -62 146 8 419 320 6 26 chr3 87537857 87538013 -130499145 + MER5B DNA MER1_type 17 169 -9 230 315 55 55 chr3 87537865 87538030 -130499128 - MER5A DNA MER1_type -24 165 1 * 2164 225 115 11 chr3 87538051 87538681 -130498477 - L1MD3 LINE L1 0 8025 7353 1938 143 0 33 chr3 87539126 87539433 -130497725 - AluJo SINE Alu -11 301 5 735 215 23 23 chr3 87540108 87540285 -130496873 + MLT1B LTR MaLR 1 177 -213 1092 196 9 31 chr3 87540285 87540510 -130496648 + AluJo SINE Alu 1 220 -92 1984 134 3 7 chr3 87540562 87540869 -130496289 + AluSx SINE Alu 1 306 0 197 227 0 13 chr3 87540871 87540946 -130496212 + (TA)n Simple_repeat Simple_repeat 1 74 0 574 203 55 156 chr3 87540946 87541202 -130495956 + MLT1C LTR MaLR 161 467 0 338 199 27 130 chr3 87541209 87541355 -130495803 - MIR SINE MIR -47 215 85 668 168 23 53 chr3 87541510 87541641 -130495517 - FLAM_A SINE Alu -6 127 1 3884 203 63 40 chr3 87541974 87542345 -130494813 - MER45B DNA AcHobo -541 1040 679 2019 153 0 0 chr3 87542345 87542662 -130494496 - AluSg SINE Alu 0 317 1 3884 203 63 40 chr3 87542662 87543178 -130493980 - MER45B DNA AcHobo -902 679 123 2114 117 0 0 chr3 87543178 87543496 -130493662 + AluSx SINE Alu 1 318 0 3884 203 63 40 chr3 87543496 87543612 -130493546 - MER45B DNA AcHobo -1458 123 11 203 318 114 45 chr3 87543630 87543850 -130493308 + L2 LINE L2 2553 2787 -527 2087 124 37 13 chr3 87544511 87544810 -130492348 + AluSx SINE Alu 1 306 -6 636 302 61 0 chr3 87544810 87545022 -130492136 + MER82 DNA MER2_type 429 653 0 2293 102 0 13 chr3 87545234 87545537 -130491621 + AluSx SINE Alu 1 299 -13 1103 292 45 12 chr3 87646086 87646487 -130390671 + LTR16A LTR ERVL 31 444 -6 457 324 84 36 chr3 87646651 87646812 -130390346 + MIR SINE MIR 1 181 -81 1879 159 3 7 chr3 87646812 87647139 -130390019 + AluSx SINE Alu 1 326 0 457 324 84 36 chr3 87647139 87647226 -130389932 + MIR SINE MIR 181 262 0 305 348 74 40 chr3 87647225 87647413 -130389745 + MIR3 SINE MIR 7 201 -7 * 504 318 60 39 chr3 87648214 87648447 -130388711 + MIR SINE MIR 24 261 -1 27 0 0 0 chr3 87648558 87648585 -130388573 + AT_rich Low_complexity Low_complexity 1 27 0 470 323 119 43 chr3 87648642 87648708 -130388450 + L2 LINE L2 2531 2591 -722 4992 43 0 3 chr3 87648708 87649312 -130387846 + L1PA5 LINE L1 5550 6151 -3 470 323 119 43 chr3 87649312 87649965 -130387193 + L2 LINE L2 2591 3313 0 24 0 0 0 chr3 87650027 87650051 -130387107 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr3 87651560 87651588 -130385570 + AT_rich Low_complexity Low_complexity 1 28 0 525 291 38 0 chr3 87651717 87651875 -130385283 + LTR67 LTR ERVL 101 264 -293 250 312 133 68 chr3 87652074 87652674 -130384484 - L2 LINE L2 0 3272 2608 242 333 12 0 chr3 87652672 87652753 -130384405 - L2 LINE L2 -3 3310 3229 * 394 229 92 38 chr3 87652853 87652984 -130384174 + LTR67 LTR ERVL 409 546 -11 228 253 127 74 chr3 87653095 87653234 -130383924 - MLT1J2 LTR MaLR -139 311 154 2529 185 29 0 chr3 87653234 87653725 -130383433 - MLT1D LTR MaLR 0 505 1 228 253 127 74 chr3 87653725 87653814 -130383344 - MLT1J2 LTR MaLR -296 154 71 2439 102 37 6 chr3 87653933 87654286 -130382872 + THE1B LTR MaLR 1 364 0 1125 256 72 48 chr3 87654309 87654462 -130382696 - LTR33 LTR ERVL -50 471 323 1369 235 46 20 chr3 87654462 87654917 -130382241 - MLT1C LTR MaLR 0 467 1 1125 256 72 48 chr3 87654917 87655177 -130381981 - LTR33 LTR ERVL -198 323 48 1623 192 6 50 chr3 87655264 87655581 -130381577 - AluJb SINE Alu -9 303 1 362 288 48 0 chr3 87657385 87657510 -130379648 + LTR16A1 LTR ERVL 147 277 -180 1245 216 36 10 chr3 87657762 87658142 -130379016 - MLT1E1 LTR MaLR 0 654 199 403 224 46 53 chr3 87658235 87658387 -130378771 - MLT1E1 LTR MaLR -503 151 1 357 284 71 24 chr3 87659135 87659304 -130377854 - MER112 DNA MER1_type -82 178 2 347 262 40 40 chr3 87659393 87659519 -130377639 - MER5B DNA MER1_type 0 178 53 527 295 62 10 chr3 87659546 87659754 -130377404 + MIR SINE MIR 45 262 0 553 294 71 55 chr3 87660204 87660657 -130376501 + L1MC4a LINE L1 5440 5899 -1909 4300 163 40 17 chr3 87661467 87662566 -130374592 + L1MB7 LINE L1 5023 6148 -36 1835 182 0 3 chr3 87663043 87663339 -130373819 - AluJb SINE Alu -9 303 9 2271 108 0 0 chr3 87663384 87663672 -130373486 - AluSg SINE Alu -22 288 1 495 0 0 0 chr3 87663729 87663784 -130373374 + (CA)n Simple_repeat Simple_repeat 2 56 0 209 217 22 0 chr3 87664268 87664314 -130372844 + CT-rich Low_complexity Low_complexity 2 48 0 233 293 17 0 chr3 87666001 87666059 -130371099 + L2 LINE L2 3255 3313 0 3005 254 74 42 chr3 87667019 87668907 -130368251 + L1ME2 LINE L1 2199 4106 -2109 1241 190 8 43 chr3 87668907 87669160 -130367998 - AluJo SINE Alu -67 245 2 2030 271 68 28 chr3 87669163 87670264 -130366894 + L1ME2 LINE L1 4097 5307 -947 2244 96 0 0 chr3 87670264 87670555 -130366603 + AluY SINE Alu 1 291 -20 2030 271 68 28 chr3 87670555 87671063 -130366095 + L1ME2 LINE L1 5307 5793 -461 587 255 5 27 chr3 87671184 87671368 -130365790 - MER74B LTR ERVL -234 388 209 895 272 20 49 chr3 87671438 87671883 -130365275 + L1ME2 LINE L1 5802 6233 0 256 266 5 118 chr3 87672005 87672171 -130364987 + MIR SINE MIR 13 148 -60 1057 187 24 21 chr3 87672457 87672820 -130364338 + MSTB LTR MaLR 1 426 0 461 290 59 24 chr3 87672839 87673008 -130364150 - MIR SINE MIR -34 228 54 387 241 163 12 chr3 87673011 87673177 -130363981 - MLT1L LTR MaLR -145 470 280 661 252 52 24 chr3 87674651 87674861 -130362297 + MIR SINE MIR 21 236 -26 4340 28 22 0 chr3 87675813 87676356 -130360802 - L1PA3 LINE L1 -1877 4269 3715 9494 26 0 1 chr3 87676356 87678255 -130358903 + L1PA3 LINE L1 4255 6153 -2 26 0 0 0 chr3 87678256 87678282 -130358876 + AT_rich Low_complexity Low_complexity 1 26 0 264 156 0 0 chr3 87678377 87678422 -130358736 + MLT1K LTR MaLR 528 572 -16 361 221 29 10 chr3 87678674 87678778 -130358380 + MER20B DNA MER1_type 40 145 -638 296 345 15 15 chr3 87678878 87679078 -130358080 + MER20B DNA MER1_type 328 527 -256 583 258 27 4 chr3 87679181 87679406 -130357752 + MER20B DNA MER1_type 516 745 -38 26 0 0 0 chr3 87679521 87679547 -130357611 + AT_rich Low_complexity Low_complexity 1 26 0 240 35 0 0 chr3 87680610 87680639 -130356519 + (CA)n Simple_repeat Simple_repeat 2 30 0 268 213 66 0 chr3 87681779 87681840 -130355318 - MIR SINE MIR -121 141 77 219 69 0 0 chr3 87682397 87682426 -130354732 + (T)n Simple_repeat Simple_repeat 1 29 0 7422 33 9 0 chr3 87682430 87683620 -130353538 - L1PA3 LINE L1 0 6155 4963 9407 33 3 0 chr3 87683621 87684798 -130352360 + L1PA3 LINE L1 3786 4966 -1180 543 265 19 12 chr3 87686351 87686513 -130350645 + MLT1H LTR MaLR 75 237 -312 263 243 150 46 chr3 87686579 87686752 -130350406 + MLT1H LTR MaLR 299 489 -66 28 0 0 0 chr3 87686753 87686781 -130350377 + AT_rich Low_complexity Low_complexity 1 28 0 412 167 14 0 chr3 87686781 87686853 -130350305 - AluJb SINE Alu -45 267 195 189 333 0 0 chr3 87687062 87687128 -130350030 - L2 LINE L2 -2 3311 3246 256 311 244 0 chr3 87687469 87687604 -130349554 - L2 LINE L2 -4 3268 3101 1435 145 0 20 chr3 87687687 87687935 -130349223 - MER1B DNA MER1_type 0 339 97 241 224 0 45 chr3 87688013 87688080 -130349078 - MLT1I LTR MaLR -274 135 72 200 333 141 20 chr3 87688720 87688819 -130348339 + MIR SINE MIR 33 143 -65 507 265 37 0 chr3 87689342 87689478 -130347680 - MIR SINE MIR -66 196 56 678 294 8 19 chr3 87689773 87690035 -130347123 + MLT1H LTR MaLR 2 260 -289 1685 149 71 27 chr3 87690185 87690480 -130346678 + AluJo SINE Alu 1 308 -4 248 297 55 55 chr3 87690926 87691075 -130346083 + MLT1I LTR MaLR 98 246 -163 231 237 140 32 chr3 87691075 87691168 -130345990 - LTR16A1 LTR ERVL -2 455 353 305 281 74 47 chr3 87691291 87691547 -130345611 - LTR16A1 LTR ERVL -194 263 1 5249 154 23 3 chr3 87691816 87693570 -130343588 + L1MA8 LINE L1 4480 6269 -22 25 31 0 0 chr3 87693572 87693604 -130343554 + AT_rich Low_complexity Low_complexity 1 32 0 583 290 133 33 chr3 87693614 87694103 -130343055 - MLT1H LTR MaLR -11 538 1 244 320 0 0 chr3 87694324 87694402 -130342756 + GA-rich Low_complexity Low_complexity 3 80 0 213 108 0 0 chr3 87694582 87694619 -130342539 + (TG)n Simple_repeat Simple_repeat 2 38 0 738 232 23 19 chr3 87696014 87696271 -130340887 + L1MD3 LINE L1 6096 7983 -12 189 323 54 62 chr3 87696274 87696404 -130340754 + MER5A DNA MER1_type 61 189 0 320 358 33 74 chr3 87697914 87698185 -130338973 - L2 LINE L2 -20 3252 2993 1035 191 0 52 chr3 87698200 87698431 -130338727 + AluJo SINE Alu 1 219 -93 825 145 13 20 chr3 87699086 87699238 -130337920 + AluJb SINE Alu 156 306 -6 213 219 0 0 chr3 87699241 87699282 -130337876 + (TG)n Simple_repeat Simple_repeat 2 42 0 629 327 65 12 chr3 87699404 87699728 -130337430 - L2 LINE L2 -463 2851 2511 384 22 0 0 chr3 87703325 87703370 -130333788 + (CCG)n Simple_repeat Simple_repeat 3 47 0 25 31 0 0 chr3 87703377 87703409 -130333749 + GC_rich Low_complexity Low_complexity 1 32 0 192 77 0 0 chr3 87703481 87703507 -130333651 + (CCG)n Simple_repeat Simple_repeat 2 27 0 267 270 113 9 chr3 87703957 87704072 -130333086 - MIR SINE MIR -15 247 121 180 307 23 23 chr3 87704160 87704248 -130332910 - MIR SINE MIR -162 100 13 257 229 52 31 chr3 87704279 87704375 -130332783 + L1MC/D LINE L1 5698 5795 -2013 1463 159 0 84 chr3 87704435 87704767 -130332391 + AluJo SINE Alu 1 306 0 354 45 0 0 chr3 87704854 87704898 -130332260 + (CA)n Simple_repeat Simple_repeat 2 45 0 1702 168 0 7 chr3 87705436 87705716 -130331442 + AluJb SINE Alu 34 311 -1 529 278 148 36 chr3 87707634 87707911 -130329247 + L2 LINE L2 3004 3311 -2 420 274 37 15 chr3 87707906 87708041 -130329117 - MIR SINE MIR -17 245 108 * 662 233 145 0 chr3 87708171 87708330 -130328828 - MER5A DNA MER1_type -1 188 7 255 236 0 0 chr3 87708533 87708588 -130328570 - MIR SINE MIR -127 135 81 1378 176 38 46 chr3 87709529 87709875 -130327283 - MLT1A1 LTR MaLR -17 348 6 1699 171 43 0 chr3 87709950 87710249 -130326909 + AluJb SINE Alu 1 312 0 767 249 6 6 chr3 87710976 87711145 -130326013 + MER5B DNA MER1_type 2 170 -8 961 183 33 5 chr3 87711157 87711370 -130325788 + MLT1C LTR MaLR 6 224 -243 1105 181 43 50 chr3 87711371 87711653 -130325505 + MLT1C LTR MaLR 188 467 0 4240 220 23 31 chr3 87712930 87713970 -130323188 - MER45B DNA AcHobo 0 1040 9 1793 84 18 69 chr3 87714422 87714696 -130322462 + AluSq SINE Alu 1 260 -53 399 21 0 0 chr3 87714715 87714763 -130322395 + (CA)n Simple_repeat Simple_repeat 1 48 0 22 35 0 0 chr3 87715438 87715467 -130321691 + AT_rich Low_complexity Low_complexity 1 29 0 782 326 37 40 chr3 87716396 87716826 -130320332 - MLT1K LTR MaLR -64 524 96 318 341 0 0 chr3 87717603 87717691 -130319467 + MER5A DNA MER1_type 4 91 -98 377 320 39 7 chr3 87717779 87717932 -130319226 + MIR SINE MIR 104 261 -1 720 203 8 0 chr3 87718469 87718597 -130318561 - FLAM_C SINE Alu -1 132 4 292 170 23 106 chr3 87718691 87718869 -130318289 - MLT1F LTR MaLR -4 538 392 257 233 58 67 chr3 87719063 87719183 -130317975 - MLT1K LTR MaLR -419 130 12 196 77 51 0 chr3 87720991 87721030 -130316128 + CT-rich Low_complexity Low_complexity 2 42 0 212 159 45 0 chr3 87721551 87721595 -130315563 + (TTAA)n Simple_repeat Simple_repeat 2 47 0 363 194 0 0 chr3 87722264 87722336 -130314822 - MER116 DNA Mariner -5 75 4 2005 108 4 0 chr3 87722613 87722882 -130314276 + AluSp SINE Alu 37 306 -7 2089 144 7 0 chr3 87723209 87723514 -130313644 - AluSx SINE Alu -4 308 2 293 203 0 54 chr3 87723588 87723662 -130313496 + MER116 DNA Mariner 4 73 -7 328 164 0 0 chr3 87723745 87723800 -130313358 - Alu SINE Alu -5 295 241 1750 113 90 4 chr3 87723800 87724056 -130313102 - AluSx SINE Alu -32 280 3 331 324 0 19 chr3 87724124 87724232 -130312926 + L2 LINE L2 3203 3308 -5 284 284 0 0 chr3 87724433 87724507 -130312651 - MIR SINE MIR -107 155 82 480 283 79 76 chr3 87724630 87725036 -130312122 - L2 LINE L2 0 3313 2907 927 256 81 43 chr3 87725162 87725326 -130311832 + LTR40c LTR ERVL 7 163 -302 1352 202 115 12 chr3 87725326 87725657 -130311501 + MLT1A1 LTR MaLR 1 365 0 927 256 81 43 chr3 87725657 87725934 -130311224 + LTR40c LTR ERVL 163 465 0 21 0 0 0 chr3 87726144 87726165 -130310993 + AT_rich Low_complexity Low_complexity 1 21 0 258 109 0 0 chr3 87726288 87726334 -130310824 - MADE1 DNA Mariner 0 80 35 23 54 0 0 chr3 87726385 87726422 -130310736 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr3 87727012 87727040 -130310118 + AT_rich Low_complexity Low_complexity 1 28 0 264 266 141 47 chr3 87727943 87728071 -130309087 + MIR SINE MIR 44 183 -79 300 27 0 0 chr3 87728073 87728110 -130309048 + (CA)n Simple_repeat Simple_repeat 2 38 0 406 181 0 14 chr3 87728110 87728182 -130308976 + Tigger5 DNA MER2_type 7 77 -2246 282 189 0 0 chr3 87728186 87728239 -130308919 - Tigger5 DNA MER2_type -6 2317 2265 588 29 0 0 chr3 87728309 87728379 -130308779 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 357 252 55 21 chr3 87729554 87729785 -130307373 - MER41B LTR ERV1 -205 430 56 774 202 6 42 chr3 87729921 87730089 -130307069 - FRAM SINE Alu -18 158 1 4068 158 8 8 chr3 87730101 87730830 -130306328 + L1MB2 LINE L1 5436 6164 -7 191 253 25 38 chr3 87730966 87731045 -130306113 + MIR SINE MIR 111 188 -74 1805 193 27 11 chr3 87731076 87731450 -130305708 - MLT1B LTR MaLR 0 390 11 267 140 0 0 chr3 87732268 87732318 -130304840 + (GA)n Simple_repeat Simple_repeat 1 50 0 488 243 42 123 chr3 87732863 87733172 -130303986 + HAL1 LINE L1 971 1254 -1253 1997 150 3 10 chr3 87733645 87733958 -130303200 + AluSx SINE Alu 1 311 -1 23 0 0 0 chr3 87734985 87735008 -130302150 + AT_rich Low_complexity Low_complexity 1 23 0 53 40 0 30 chr3 87735021 87735121 -130302037 + AT_rich Low_complexity Low_complexity 1 97 0 30 45 0 0 chr3 87735447 87735491 -130301667 + AT_rich Low_complexity Low_complexity 1 44 0 259 296 17 17 chr3 87735567 87735682 -130301476 - L1ME4a LINE L1 -56 6065 5951 231 206 0 48 chr3 87735708 87735771 -130301387 + (CATATA)n Simple_repeat Simple_repeat 6 65 0 3482 100 45 4 chr3 87735841 87736332 -130300826 - MER9 LTR ERVK 0 511 1 384 82 0 0 chr3 87738175 87738218 -130298940 + (TG)n Simple_repeat Simple_repeat 1 104 0 384 82 0 0 chr3 87738218 87738279 -130298879 + (TG)n Simple_repeat Simple_repeat 2 62 0 298 327 93 6 chr3 87738490 87738652 -130298506 + MER5B DNA MER1_type 1 176 -2 2382 74 0 0 chr3 87739188 87739485 -130297673 + AluY SINE Alu 1 297 -14 338 227 23 0 chr3 87739492 87739580 -130297578 + L1MC4 LINE L1 6614 6703 -1339 219 218 0 0 chr3 87739580 87739635 -130297523 + (TA)n Simple_repeat Simple_repeat 1 55 0 207 0 0 0 chr3 87739867 87739890 -130297268 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 842 143 0 0 chr3 87739900 87740026 -130297132 - AluSq/x SINE Alu -187 126 1 568 265 52 38 chr3 87740094 87740305 -130296853 - MLT1K LTR MaLR -41 547 334 860 213 13 85 chr3 87740337 87740448 -130296710 - MIR SINE MIR -17 245 158 1564 176 28 24 chr3 87740448 87740737 -130296421 - AluJo SINE Alu -22 290 1 860 213 13 85 chr3 87740737 87740860 -130296298 - MIR SINE MIR -104 158 28 312 48 0 0 chr3 87741342 87741384 -130295774 + (TC)n Simple_repeat Simple_repeat 1 42 0 180 0 0 0 chr3 87741396 87741416 -130295742 + (T)n Simple_repeat Simple_repeat 1 20 0 225 0 0 0 chr3 87741606 87741631 -130295527 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1954 156 0 0 chr3 87742084 87742379 -130294779 + AluJo SINE Alu 2 296 -16 3450 164 45 68 chr3 87742948 87743752 -130293406 + LTR1 LTR ERV1 1 785 0 401 279 39 0 chr3 87744837 87744966 -130292192 + MIR SINE MIR 120 253 -9 2158 113 3 0 chr3 87745146 87745439 -130291719 - AluSx SINE Alu -18 294 1 386 362 0 0 chr3 87745663 87745768 -130291390 + L2 LINE L2 3164 3268 -4 1939 144 0 0 chr3 87745807 87746091 -130291067 - AluSx SINE Alu -20 292 9 465 321 42 50 chr3 87746681 87746741 -130290417 - MLT1I LTR MaLR -115 294 235 1070 194 19 28 chr3 87746741 87746952 -130290206 - MER3 DNA MER1_type 0 209 1 465 321 42 50 chr3 87746952 87747127 -130290031 - MLT1I LTR MaLR -174 235 61 1660 202 32 23 chr3 87747127 87747469 -130289689 + MLT2B1 LTR ERVL 1 345 -175 311 108 36 65 chr3 87747821 87747960 -130289198 + (CTATA)n Simple_repeat Simple_repeat 1 135 0 345 148 0 4 chr3 87747998 87748063 -130289095 - MLT2B1 LTR ERVL -351 63 1 234 389 19 0 chr3 87748063 87748167 -130288991 + MLT1I LTR MaLR 61 166 -243 256 186 41 70 chr3 87748315 87748487 -130288671 + (TATATG)n Simple_repeat Simple_repeat 3 169 0 330 90 59 62 chr3 87748550 87748910 -130288248 + (TA)n Simple_repeat Simple_repeat 1 359 0 259 100 40 60 chr3 87748916 87748966 -130288192 + MLT2B1 LTR ERVL 366 414 0 254 200 57 14 chr3 87748966 87749030 -130288128 - MLT1I LTR MaLR -342 67 1 1352 193 3 75 chr3 87749272 87749578 -130287580 - AluJb SINE Alu -18 284 1 323 324 195 43 chr3 87749782 87749992 -130287166 - MIR SINE MIR -20 242 1 240 297 90 41 chr3 87750062 87750207 -130286951 - MIR3 SINE MIR -17 191 40 308 200 70 0 chr3 87751085 87751185 -130285973 + (TA)n Simple_repeat Simple_repeat 2 108 0 447 249 63 26 chr3 87751378 87751619 -130285539 + LTR16A1 LTR ERVL 3 366 -91 2753 209 52 13 chr3 87751945 87752635 -130284523 + L1MD3 LINE L1 7077 7989 -6 182 240 40 0 chr3 87752814 87752864 -130284294 - L2 LINE L2 0 3313 3262 349 239 45 0 chr3 87752927 87753015 -130284143 + MIR SINE MIR 106 197 -65 198 254 30 45 chr3 87753092 87753159 -130283999 + L2 LINE L2 533 598 -2716 213 94 0 0 chr3 87753170 87753202 -130283956 + (TA)n Simple_repeat Simple_repeat 2 33 0 235 289 18 9 chr3 87754532 87754646 -130282512 + L1M4 LINE L1 2159 2273 -3873 * 279 224 95 35 chr3 87754643 87754759 -130282399 + L1ME2 LINE L1 5820 5942 -222 30 0 0 0 chr3 87754759 87754789 -130282369 + AT_rich Low_complexity Low_complexity 1 30 0 331 360 61 14 chr3 87754831 87754978 -130282180 + MER5A DNA MER1_type 36 189 0 283 313 135 0 chr3 87755016 87755112 -130282046 - MIR SINE MIR -73 135 27 299 316 24 45 chr3 87756252 87756388 -130280770 - MIR3 SINE MIR -17 191 58 3097 141 22 8 chr3 87756388 87756885 -130280273 - LTR10B LTR ERV1 0 505 2 299 316 24 45 chr3 87756885 87756935 -130280223 - MIR3 SINE MIR -150 58 8 218 379 11 0 chr3 87757147 87757234 -130279924 + MIR3 SINE MIR 2 89 -119 184 231 58 19 chr3 87757468 87757520 -130279638 - L3 LINE CR1 -6 1571 1518 219 228 0 35 chr3 87758548 87758605 -130278553 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 588 286 32 26 chr3 87758695 87758884 -130278274 + MIR SINE MIR 11 200 -62 181 379 58 0 chr3 87759148 87759251 -130277907 + MIR SINE MIR 127 235 -27 2014 171 3 3 chr3 87759368 87759712 -130277446 - MER2 DNA MER2_type 0 344 1 264 314 41 72 chr3 87760047 87760241 -130276917 - MIR SINE MIR -67 195 8 243 88 0 0 chr3 87761829 87761863 -130275295 + (TA)n Simple_repeat Simple_repeat 1 34 0 188 67 33 0 chr3 87763545 87763575 -130273583 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 1431 196 0 50 chr3 87763863 87764164 -130272994 - AluJo SINE Alu -26 286 1 818 284 90 61 chr3 87764381 87764857 -130272301 + L2 LINE L2 2824 3313 0 303 22 0 22 chr3 87765444 87765490 -130271668 - L1PB1 LINE L1 -2 6149 6105 1053 187 119 26 chr3 87767230 87767555 -130269603 + MSTD LTR MaLR 1 396 0 996 144 131 1 chr3 87767602 87767824 -130269334 + L1MB3 LINE L1 5716 5938 -233 519 181 90 65 chr3 87768151 87768306 -130268852 + LTR45B LTR ERV1 331 489 0 1000 175 34 10 chr3 87768306 87768512 -130268646 + L1MB3 LINE L1 5933 6143 -40 1404 213 80 28 chr3 87768512 87768873 -130268285 + MLT1B LTR MaLR 1 380 -10 1277 248 73 90 chr3 87769123 87769949 -130267209 + L1MDb LINE L1 772 1610 -4796 189 107 0 0 chr3 87769949 87769977 -130267181 + (TA)n Simple_repeat Simple_repeat 1 28 0 1277 248 73 90 chr3 87769977 87770036 -130267122 + L1MDb LINE L1 1610 1605 -4801 198 103 0 0 chr3 87770036 87770065 -130267093 + (TA)n Simple_repeat Simple_repeat 2 30 0 1277 248 73 90 chr3 87770065 87770150 -130267008 + L1MDb LINE L1 1604 1689 -4717 429 159 168 35 chr3 87770157 87770270 -130266888 - MSTC LTR MaLR -51 377 250 3969 249 124 44 chr3 87770283 87772650 -130264508 + L1MDb LINE L1 1577 4243 -2163 2070 177 57 7 chr3 87772669 87773076 -130264082 - MSTC LTR MaLR -1 427 1 769 260 6 11 chr3 87773076 87773253 -130263905 + LTR53 LTR ERVL 10 185 -334 262 217 0 84 chr3 87773549 87773632 -130263526 + MLT1K LTR MaLR 481 556 -32 1598 237 27 47 chr3 87773680 87774191 -130262967 + MLT1D LTR MaLR 1 501 -4 3820 220 85 24 chr3 87774301 87774912 -130262246 - L1MC4 LINE L1 -190 7852 7279 2266 89 0 0 chr3 87774912 87775194 -130261964 + AluSx SINE Alu 17 298 -14 3820 220 85 24 chr3 87775194 87775526 -130261632 - L1MC4 LINE L1 -763 7279 6834 2228 76 10 0 chr3 87775526 87775829 -130261329 - L1PA7 LINE L1 0 6154 5849 3820 220 85 24 chr3 87775829 87775958 -130261200 - L1MC4 LINE L1 -1208 6834 6714 1510 174 147 21 chr3 87775961 87776149 -130261009 - MSTA LTR MaLR 0 428 265 195 42 0 0 chr3 87776149 87776173 -130260985 + (GA)n Simple_repeat Simple_repeat 1 24 0 1510 174 147 21 chr3 87776173 87776364 -130260794 - MSTA LTR MaLR -163 265 1 980 248 20 8 chr3 87776378 87776632 -130260526 - L1M4 LINE L1 -3586 2560 2304 597 194 127 0 chr3 87776629 87776794 -130260364 - L1MB7 LINE L1 -1 6183 5998 * 16996 46 9 8 chr3 87776799 87779708 -130257450 + L1PA5 LINE L1 3243 6151 -3 1421 239 66 24 chr3 87779850 87780276 -130256882 + Charlie4a DNA MER1_type 1 444 -64 27 0 0 0 chr3 87781255 87781282 -130255876 + AT_rich Low_complexity Low_complexity 1 27 0 623 284 209 4 chr3 87781398 87781676 -130255482 - LTR16C LTR ERVL -59 432 98 1277 182 91 40 chr3 87782504 87782801 -130254357 - AluJb SINE Alu 0 312 1 1007 181 18 53 chr3 87782805 87783032 -130254126 + MER20 DNA MER1_type 1 219 0 1100 303 30 13 chr3 87783205 87783598 -130253560 - LTR16C LTR ERVL -7 484 85 1777 158 14 0 chr3 87785914 87786226 -130250932 + AluSx SINE Alu 1 316 0 21 0 0 0 chr3 87786760 87786781 -130250377 + AT_rich Low_complexity Low_complexity 1 21 0 403 48 60 24 chr3 87787072 87787155 -130250003 + CT-rich Low_complexity Low_complexity 3 88 0 2087 127 3 3 chr3 87787607 87787907 -130249251 + AluSx SINE Alu 1 300 -12 246 289 18 0 chr3 87788355 87788444 -130248714 - L2 LINE L2 -13 3300 3208 363 256 70 31 chr3 87788607 87788736 -130248422 - L2 LINE L2 -9 3304 3171 201 154 0 0 chr3 87788764 87788803 -130248355 + A-rich Low_complexity Low_complexity 5 43 0 22 35 0 0 chr3 87788901 87788930 -130248228 + AT_rich Low_complexity Low_complexity 1 29 0 1268 254 60 73 chr3 87789065 87789745 -130247413 + HsTC2a DNA Tc2 72 742 -2 2448 58 0 0 chr3 87789795 87790090 -130247068 - AluY SINE Alu -16 295 1 2271 91 7 0 chr3 87790968 87791264 -130245894 + AluSq SINE Alu 1 298 -15 31 20 0 20 chr3 87791296 87791308 -130245850 + AT_rich Low_complexity Low_complexity 1 12 -36 7717 14 7 1 chr3 87791308 87792590 -130244568 + L1PA3 LINE L1 4866 6152 -3 31 20 0 20 chr3 87792590 87792626 -130244532 + AT_rich Low_complexity Low_complexity 12 48 0 1539 198 84 56 chr3 87794433 87794968 -130242190 - MER34B LTR ERV1 -5 560 11 697 282 40 40 chr3 87795065 87795317 -130241841 + MIR SINE MIR 3 254 -8 3396 114 11 47 chr3 87795320 87795953 -130241205 - MER4B LTR ERV1 0 779 1 1432 217 18 4 chr3 87796407 87796688 -130240470 + MER49 LTR ERV1 1 285 -638 1547 211 32 12 chr3 87796750 87797096 -130240062 + MER4D LTR ERV1 551 903 0 29 0 0 0 chr3 87797343 87797372 -130239786 + AT_rich Low_complexity Low_complexity 1 29 0 2258 97 0 0 chr3 87797372 87797662 -130239496 - AluY SINE Alu -18 293 4 1230 188 103 4 chr3 87797667 87797938 -130239220 - AluJo SINE Alu -14 298 1 301 280 76 15 chr3 87798143 87798275 -130238883 - MER91C DNA MER1_type 0 140 1 518 270 24 10 chr3 87799126 87799351 -130237807 + L1ME2 LINE L1 5945 6334 0 2370 87 0 3 chr3 87799967 87800278 -130236880 + AluY SINE Alu 1 310 -1 1795 135 14 24 chr3 87800352 87800640 -130236518 - THE1B LTR MaLR 0 364 80 1743 163 98 53 chr3 87800640 87801149 -130236009 + pTR5 LTR ERV1 747 1278 -1160 1754 234 79 32 chr3 87801173 87801733 -130235425 - L1ME2 LINE L1 -57 6107 5522 227 312 65 26 chr3 87802289 87802366 -130234792 + MIR SINE MIR 29 108 -154 273 296 11 11 chr3 87802918 87803006 -130234152 - MIR SINE MIR -15 247 160 2232 119 3 0 chr3 87803336 87803647 -130233511 + AluSx SINE Alu 1 312 0 1093 216 62 26 chr3 87804069 87804375 -130232783 - L1ME1 LINE L1 -5 6659 6343 3042 253 59 47 chr3 87804395 87805035 -130232123 - L1ME1 LINE L1 -1142 5502 4871 2857 7 0 0 chr3 87805035 87805345 -130231813 - AluY SINE Alu -1 310 1 3042 253 59 47 chr3 87805345 87805484 -130231674 - L1ME1 LINE L1 -1773 4871 4735 2154 123 0 25 chr3 87805484 87805800 -130231358 - AluSx SINE Alu -4 308 1 3042 253 59 47 chr3 87805800 87806595 -130230563 - L1ME1 LINE L1 -1909 4735 3908 1033 233 38 19 chr3 87806782 87807109 -130230049 - L1M4 LINE L1 -1333 5231 4911 278 65 0 43 chr3 87807144 87807190 -130229968 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 777 227 5 6 chr3 87807194 87807418 -130229740 - L1MCa LINE L1 -4689 1796 1120 1163 249 80 23 chr3 87807419 87807817 -130229341 - L1MB7 LINE L1 -10 6174 5754 * 2347 223 47 47 chr3 87807816 87808033 -130229125 - L1ME1 LINE L1 -3171 3473 3257 1567 228 3 3 chr3 87808033 87808331 -130228827 - AluJb SINE Alu -14 298 1 2347 223 47 47 chr3 87808331 87809398 -130227760 - L1ME1 LINE L1 -3387 3257 2185 746 259 119 31 chr3 87809416 87809736 -130227422 - MER7A DNA MER2_type 0 346 1 4426 248 92 36 chr3 87809744 87811464 -130225694 - L1ME1 LINE L1 -4825 1821 13 3687 262 33 22 chr3 87811483 87812604 -130224554 - L1MCa LINE L1 -4912 1133 1 310 262 185 40 chr3 87812628 87812930 -130224228 - L1MEc LINE L1 -5203 1193 848 1964 178 25 0 chr3 87812936 87813262 -130223896 + MER1B DNA MER1_type 1 334 -5 513 368 36 26 chr3 87813604 87814025 -130223133 - L1MEc LINE L1 -5960 436 12 336 319 14 21 chr3 87814318 87814462 -130222696 - MIR SINE MIR 0 262 120 21 0 0 0 chr3 87814831 87814852 -130222306 + AT_rich Low_complexity Low_complexity 1 21 0 389 319 44 2 chr3 87816108 87816268 -130220890 - MIR3 SINE MIR -58 150 5 2327 107 0 0 chr3 87817652 87817961 -130219197 - AluSc SINE Alu 0 309 1 198 71 0 0 chr3 87818078 87818106 -130219052 + (T)n Simple_repeat Simple_repeat 1 28 0 249 33 0 0 chr3 87818202 87818232 -130218926 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 282 160 0 0 chr3 87818275 87818325 -130218833 + A-rich Low_complexity Low_complexity 1 50 0 535 279 85 20 chr3 87820052 87820253 -130216905 + MLT1H LTR MaLR 2 215 -334 243 360 85 0 chr3 87820796 87820960 -130216198 - LTR67 LTR ERVL 0 557 380 1016 279 86 35 chr3 87821187 87821681 -130215477 - L2 LINE L2 -55 3258 2738 3008 192 36 53 chr3 87821719 87822474 -130214684 - L1MB5 LINE L1 0 6174 5433 329 203 0 0 chr3 87822489 87822548 -130214610 - L2 LINE L2 -613 2701 2643 387 0 0 0 chr3 87823773 87823816 -130213342 + (TG)n Simple_repeat Simple_repeat 2 44 0 327 213 0 0 chr3 87824202 87824263 -130212895 + Charlie5 DNA MER1_type 10 70 -2542 * 464 183 12 67 chr3 87824261 87824425 -130212733 + Charlie5 DNA MER1_type 2430 2584 -28 920 294 114 43 chr3 87824436 87825076 -130212082 - L2 LINE L2 -85 3228 2544 1685 246 27 86 chr3 87826403 87826985 -130210173 - MLT1E2 LTR MaLR 0 626 111 1099 168 4 66 chr3 87827763 87827989 -130209169 - MER20 DNA MER1_type -2 217 6 818 240 33 0 chr3 87828001 87828184 -130208974 - MER5A DNA MER1_type 0 189 1 767 317 113 16 chr3 87828200 87828582 -130208576 + LTR16C LTR ERVL 73 491 0 1644 147 78 36 chr3 87828606 87828966 -130208192 + THE1C LTR MaLR 1 375 0 706 197 0 15 chr3 87828990 87829122 -130208036 - FLAM_C SINE Alu -3 130 1 2098 132 0 3 chr3 87829126 87829430 -130207728 - AluSg SINE Alu -5 305 3 809 227 54 25 chr3 87829498 87829701 -130207457 + MER20 DNA MER1_type 7 215 -4 279 0 0 0 chr3 87830849 87830880 -130206278 + (TG)n Simple_repeat Simple_repeat 2 32 0 2265 100 3 7 chr3 87830980 87831279 -130205879 + AluSp SINE Alu 2 299 -14 707 49 20 10 chr3 87832211 87832313 -130204845 + L1PA2 LINE L1 6051 6153 -2 332 340 30 43 chr3 87832889 87833121 -130204037 - MLT1K LTR MaLR -174 414 186 248 228 51 25 chr3 87833296 87833375 -130203783 - MLT1H LTR MaLR -15 534 454 561 284 0 32 chr3 87833440 87833630 -130203528 - MLT1H LTR MaLR -315 234 51 23 54 0 0 chr3 87833855 87833892 -130203266 + AT_rich Low_complexity Low_complexity 1 37 0 2455 61 3 6 chr3 87834510 87834822 -130202336 + AluY SINE Alu 1 311 0 1139 154 14 61 chr3 87835065 87835279 -130201879 - MER20 DNA MER1_type 0 219 16 427 287 49 14 chr3 87835981 87836124 -130201034 + MIR SINE MIR 3 150 -112 888 271 18 0 chr3 87836349 87836567 -130200591 - MER58A DNA MER1_type -1 223 2 5936 117 2 23 chr3 87836724 87837310 -130199848 + L1PB3 LINE L1 5216 5777 -377 300 27 0 0 chr3 87837310 87837347 -130199811 + (TG)n Simple_repeat Simple_repeat 2 38 0 5936 117 2 23 chr3 87837347 87837717 -130199441 + L1PB3 LINE L1 5777 6153 -1 3524 173 62 24 chr3 87838109 87838862 -130198296 + L1MD1 LINE L1 5459 6240 -2 2084 188 178 0 chr3 87839196 87839239 -130197919 - MLT2B2 LTR ERVL -6 509 475 195 42 0 0 chr3 87839239 87839263 -130197895 + (GA)n Simple_repeat Simple_repeat 2 25 0 2084 188 178 0 chr3 87839263 87839651 -130197507 - MLT2B2 LTR ERVL -40 475 1 667 162 15 37 chr3 87839651 87839787 -130197371 + FLAM_A SINE Alu 1 133 0 197 339 37 9 chr3 87841449 87841558 -130195600 + MIR SINE MIR 141 252 -10 33 43 0 0 chr3 87841613 87841660 -130195498 + AT_rich Low_complexity Low_complexity 1 47 0 1576 207 38 44 chr3 87841959 87842326 -130194832 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chr3 87842344 87842365 -130194793 + AT_rich Low_complexity Low_complexity 1 21 0 521 198 111 0 chr3 87844311 87844437 -130192721 - MER21B LTR ERV1 -37 826 687 968 134 13 19 chr3 87844460 87844617 -130192541 - AluSq SINE Alu -157 156 1 286 214 19 19 chr3 87844657 87844760 -130192398 + CT-rich Low_complexity Low_complexity 3 105 0 395 250 87 5 chr3 87845004 87845188 -130191970 - HAL1b LINE L1 -225 1123 925 285 269 47 54 chr3 87845224 87845373 -130191785 - HAL1b LINE L1 -766 582 435 270 121 52 17 chr3 87845523 87845581 -130191577 - LTR2B LTR ERV1 -430 60 1 24521 113 8 5 chr3 87845581 87849115 -130188043 - Harlequin LTR ERV1 0 6896 3352 5186 53 105 72 chr3 87849114 87850086 -130187072 - Harlequin LTR ERV1 -4322 2574 1571 * 5524 113 22 12 chr3 87850072 87850961 -130186197 - Harlequin LTR ERV1 -5986 910 13 496 91 0 0 chr3 87850973 87851039 -130186119 - LTR2B LTR ERV1 0 490 425 755 201 0 8 chr3 87851502 87851636 -130185522 - FLAM_A SINE Alu 0 133 1 2364 73 0 3 chr3 87853170 87853492 -130183666 - AluY SINE Alu 0 311 1 1295 183 23 108 chr3 87853788 87854187 -130182971 + MLT1A1 LTR MaLR 1 365 0 180 97 0 0 chr3 87855035 87855066 -130182092 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3976 209 10 10 chr3 87855538 87856329 -130180829 + MER52A LTR ERV1 965 1755 0 655 283 88 84 chr3 87856426 87856627 -130180531 - HAL1 LINE L1 -1122 1385 1186 2000 120 0 0 chr3 87856627 87856901 -130180257 - AluSx SINE Alu 0 312 39 655 283 88 84 chr3 87856901 87857222 -130179936 - HAL1 LINE L1 -1321 1186 861 1027 281 133 9 chr3 87858444 87858881 -130178277 + LTR16C LTR ERVL 1 491 0 2498 72 0 0 chr3 87859337 87859644 -130177514 + AluY SINE Alu 1 307 -4 2506 122 23 52 chr3 87860229 87860670 -130176488 + MSTA LTR MaLR 1 428 0 410 281 48 34 chr3 87861349 87861495 -130175663 + MIR SINE MIR 85 232 -30 682 173 0 0 chr3 87861496 87861606 -130175552 - MLT1A2 LTR MaLR 0 374 265 729 260 0 0 chr3 87861626 87861780 -130175378 - MLT1A2 LTR MaLR -220 154 1 192 206 0 0 chr3 87862613 87862647 -130174511 - MER5A DNA MER1_type -4 185 152 401 182 114 0 chr3 87862807 87862895 -130174263 + MER3 DNA MER1_type 112 209 0 397 325 33 26 chr3 87863323 87863474 -130173684 + L2 LINE L2 3156 3307 -6 302 182 15 0 chr3 87863485 87863551 -130173607 + (TA)n Simple_repeat Simple_repeat 1 67 0 2015 161 30 3 chr3 87863551 87863881 -130173277 + MER2 DNA MER2_type 1 339 -6 249 330 70 30 chr3 87863932 87864032 -130173126 - MER5A DNA MER1_type -30 159 56 465 243 21 62 chr3 87864835 87864979 -130172179 + MIR SINE MIR 17 154 -108 1831 162 11 28 chr3 87864979 87865338 -130171820 - MER47A DNA MER2_type 0 366 14 20580 66 9 3 chr3 87865566 87868596 -130168562 + L1P2 LINE L1 2631 5680 -474 5187 151 42 6 chr3 87868710 87869620 -130167538 - Tigger3b DNA MER2_type -287 944 2 638 225 32 43 chr3 87870202 87870389 -130166769 + MIR SINE MIR 78 262 0 239 261 34 34 chr3 87871585 87871673 -130165485 - MLT1K LTR MaLR -64 524 437 3050 108 2 20 chr3 87871683 87872135 -130165023 - MLT2A1 LTR ERVL 0 444 1 1696 214 27 3 chr3 87873630 87873962 -130163196 - MLT1A1 LTR MaLR -2 363 24 275 270 75 62 chr3 87875638 87875879 -130161279 - L1MC5 LINE L1 -61 7900 7657 362 269 58 13 chr3 87875892 87876045 -130161113 + L1ME LINE L1 12 169 -5901 1556 142 21 0 chr3 87876213 87876446 -130160712 - AluSx SINE Alu -11 301 64 14262 118 30 59 chr3 87876500 87879043 -130158115 + L1P LINE L1 11 2477 -3669 280 308 147 67 chr3 87879593 87879867 -130157291 + MLT1L LTR MaLR 21 332 -283 3432 108 32 6 chr3 87879867 87880397 -130156761 + L1PA13 LINE L1 5620 6163 0 280 308 147 67 chr3 87880397 87880482 -130156676 + MLT1L LTR MaLR 332 409 -206 377 319 82 52 chr3 87881074 87881403 -130155755 - L3 LINE CR1 -7 1570 1232 23 33 0 0 chr3 87881644 87881674 -130155484 + AT_rich Low_complexity Low_complexity 1 30 0 372 77 0 0 chr3 87881762 87881814 -130155344 + (TTCC)n Simple_repeat Simple_repeat 3 54 0 2282 126 46 3 chr3 87882540 87882889 -130154269 - THE1B LTR MaLR 0 364 1 334 248 67 0 chr3 87882920 87883025 -130154133 - MER5A DNA MER1_type -77 112 1 770 289 11 0 chr3 87883038 87883218 -130153940 - MER5A DNA MER1_type -6 183 2 423 284 149 10 chr3 87883917 87884125 -130153033 + MIR SINE MIR 12 248 -14 493 311 116 30 chr3 87886685 87886987 -130150171 + L2 LINE L2 2986 3313 0 500 333 104 54 chr3 87887443 87888237 -130148921 + L2 LINE L2 2429 3247 -25 1452 266 38 36 chr3 87888417 87888970 -130148188 + L1ME3A LINE L1 5613 6166 -4 653 352 24 8 chr3 87889145 87889392 -130147766 - MIR SINE MIR 0 262 12 26 50 0 0 chr3 87889425 87889465 -130147693 + AT_rich Low_complexity Low_complexity 1 40 0 29 0 0 0 chr3 87889939 87889968 -130147190 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 87890241 87890262 -130146896 + AT_rich Low_complexity Low_complexity 1 21 0 1900 133 4 7 chr3 87890647 87890946 -130146212 - AluSx SINE Alu 0 302 5 204 67 0 0 chr3 87890974 87891004 -130146154 + (TC)n Simple_repeat Simple_repeat 2 31 0 207 162 0 0 chr3 87891005 87891042 -130146116 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 2667 126 62 6 chr3 87891506 87891848 -130145310 - L1PB1 LINE L1 -1 6150 5774 276 30 0 0 chr3 87891848 87891881 -130145277 + (TG)n Simple_repeat Simple_repeat 2 34 0 2667 126 62 6 chr3 87891881 87892006 -130145152 - L1PB1 LINE L1 -377 5774 5657 10668 203 58 9 chr3 87892106 87895004 -130142154 - L1PBa LINE L1 -1600 5262 1905 1727 141 0 0 chr3 87895004 87895253 -130141905 - AluSx SINE Alu -5 307 59 10668 203 58 9 chr3 87895253 87896889 -130140269 - L1PBa LINE L1 -4957 1905 351 405 63 16 16 chr3 87896890 87896953 -130140205 + LTR2B LTR ERV1 1 63 -427 478 276 122 18 chr3 87897658 87897879 -130139279 - MLT1K LTR MaLR 0 588 345 689 283 16 34 chr3 87898914 87899236 -130137922 - L1ME LINE L1 -5308 762 447 673 306 59 51 chr3 87899645 87900252 -130136906 + L1MEc LINE L1 851 1462 -4934 1549 265 84 19 chr3 87900252 87900951 -130136207 + L1M4 LINE L1 4565 5309 -837 1147 167 11 5 chr3 87900952 87901138 -130136020 + AluJo SINE Alu 86 272 -40 480 177 0 0 chr3 87901281 87901377 -130135781 - L1 LINE L1 -1416 4730 4635 1377 211 0 0 chr3 87901378 87901681 -130135477 + L1 LINE L1 4331 4633 -1513 840 221 102 72 chr3 87901682 87902153 -130135005 + L1MDa LINE L1 1563 2047 -4493 2196 103 29 11 chr3 87902421 87902771 -130134387 + L1MA2 LINE L1 5948 6303 -1 999 280 43 19 chr3 87902836 87903161 -130133997 + LTR16A LTR ERVL 112 444 -6 268 322 43 17 chr3 87904170 87904285 -130132873 + MIR SINE MIR 7 124 -138 517 202 11 0 chr3 87904676 87904765 -130132393 + MER7A DNA MER2_type 1 88 -258 1675 170 44 26 chr3 87904913 87905255 -130131903 + MER7A DNA MER2_type 1 346 0 26 30 0 0 chr3 87905255 87905288 -130131870 + AT_rich Low_complexity Low_complexity 1 33 0 1079 296 73 14 chr3 87905414 87905972 -130131186 - L1ME3A LINE L1 -200 5970 5380 1471 264 65 44 chr3 87906098 87906873 -130130285 - L1ME3A LINE L1 -873 5273 4483 25 51 0 0 chr3 87907855 87907894 -130129264 + AT_rich Low_complexity Low_complexity 1 39 0 317 329 33 40 chr3 87908111 87908263 -130128895 - MIR SINE MIR -89 173 23 605 249 19 63 chr3 87908367 87908572 -130128586 - L1ME LINE L1 -403 5763 5568 594 148 39 16 chr3 87908594 87908722 -130128436 - AluSp/q SINE Alu -10 303 173 324 0 0 0 chr3 87909116 87909152 -130128006 + (TTA)n Simple_repeat Simple_repeat 2 37 0 936 170 5 121 chr3 87909190 87909283 -130127875 - AluJb SINE Alu -95 217 115 243 0 0 0 chr3 87909283 87909310 -130127848 + (TG)n Simple_repeat Simple_repeat 2 28 0 936 170 5 121 chr3 87909310 87909335 -130127823 - AluJb SINE Alu -197 115 89 348 24 0 0 chr3 87909335 87909376 -130127782 + (TTG)n Simple_repeat Simple_repeat 2 42 0 936 170 5 121 chr3 87909376 87909479 -130127679 - AluJb SINE Alu -223 89 21 831 107 66 8 chr3 87910858 87910979 -130126179 - AluSg1 SINE Alu -181 128 1 3535 234 60 31 chr3 87910985 87912335 -130124823 - L1ME LINE L1 -595 5571 4188 553 214 0 0 chr3 87912647 87912750 -130124408 + MLT2F LTR ERVL 1 103 -560 22 35 0 0 chr3 87912934 87912963 -130124195 + AT_rich Low_complexity Low_complexity 1 29 0 485 292 14 67 chr3 87913114 87913323 -130123835 - MIR SINE MIR 0 262 65 1076 244 176 21 chr3 87913420 87913851 -130123307 + MLT2F LTR ERVL 4 501 -162 491 56 14 0 chr3 87913898 87913969 -130123189 + (CA)n Simple_repeat Simple_repeat 2 73 0 22 70 0 0 chr3 87913982 87914025 -130123133 + AT_rich Low_complexity Low_complexity 1 43 0 292 329 0 0 chr3 87914240 87914322 -130122836 + MIR3 SINE MIR 73 154 -54 2218 237 105 17 chr3 87914677 87915082 -130122076 - L1ME2 LINE L1 0 6164 5796 2682 177 10 2 chr3 87915082 87915563 -130121595 + MER31A LTR ERV1 1 485 0 2218 237 105 17 chr3 87915563 87915960 -130121198 - L1ME2 LINE L1 -368 5796 5292 240 286 53 53 chr3 87916046 87916235 -130120923 - L1ME2 LINE L1 -1808 4338 4150 364 211 42 0 chr3 87916272 87916367 -130120791 - L1MDa LINE L1 -878 5662 5564 2097 276 94 39 chr3 87916652 87917844 -130119314 - L1MDa LINE L1 -1610 4930 3805 1091 119 124 0 chr3 87917844 87918029 -130119129 - L1PB3 LINE L1 -11 6143 5936 2097 276 94 39 chr3 87918029 87918134 -130119024 - L1MDa LINE L1 -2735 3805 3707 2395 77 0 10 chr3 87918134 87918447 -130118711 - AluY SINE Alu -1 310 1 2097 276 94 39 chr3 87918447 87918533 -130118625 - L1MDa LINE L1 -2833 3707 3470 331 323 12 6 chr3 87918540 87918704 -130118454 - L1MDa LINE L1 -3382 3158 2994 1167 233 25 70 chr3 87918800 87918860 -130118298 - MLT1E1 LTR MaLR 0 654 593 2247 95 3 0 chr3 87918860 87919154 -130118004 - AluSq SINE Alu -18 295 1 1167 233 25 70 chr3 87919154 87919450 -130117708 - MLT1E1 LTR MaLR -61 593 314 514 306 6 6 chr3 87919512 87919669 -130117489 - MLT1E1 LTR MaLR -497 157 1 23 0 0 0 chr3 87920460 87920483 -130116675 + AT_rich Low_complexity Low_complexity 1 23 0 860 142 7 7 chr3 87920634 87920775 -130116383 - AluSg/x SINE Alu -19 291 151 369 313 82 53 chr3 87920931 87921381 -130115777 - L2 LINE L2 -2 3311 2849 367 307 93 0 chr3 87921660 87921800 -130115358 - MIR3 SINE MIR 0 208 56 29 60 0 0 chr3 87922636 87922686 -130114472 + AT_rich Low_complexity Low_complexity 1 50 0 365 58 19 0 chr3 87923032 87923084 -130114074 + (CA)n Simple_repeat Simple_repeat 2 54 0 5734 105 32 0 chr3 87923215 87924243 -130112915 + L1PB1 LINE L1 5096 6151 0 598 276 47 14 chr3 87924279 87924576 -130112582 - L1MDa LINE L1 -4977 1563 1257 2232 257 62 28 chr3 87924748 87925558 -130111600 + L1ME3 LINE L1 5319 6155 -7 422 276 132 53 chr3 87925573 87925838 -130111320 + L1ME LINE L1 5438 5723 -447 2025 80 7 0 chr3 87925991 87926266 -130110892 - L1P4 LINE L1 -426 5748 5472 1009 80 7 0 chr3 87926266 87926399 -130110759 + L1PA11 LINE L1 6029 6166 -8 23 54 0 0 chr3 87926974 87927011 -130110147 + AT_rich Low_complexity Low_complexity 1 37 0 704 333 52 10 chr3 87928164 87928452 -130108706 - MLT1K LTR MaLR -51 537 238 198 0 0 0 chr3 87928539 87928561 -130108597 + (CAA)n Simple_repeat Simple_repeat 2 23 0 1107 217 9 0 chr3 87930135 87930356 -130106802 - MER58A DNA MER1_type 0 224 2 438 272 196 58 chr3 87930917 87931141 -130106017 + MIR SINE MIR 8 262 0 382 242 0 55 chr3 87931469 87931597 -130105561 + MLT1K LTR MaLR 468 588 0 225 196 0 0 chr3 87931748 87931799 -130105359 - LTR54 LTR ERV1 0 510 460 412 273 58 29 chr3 87931818 87931957 -130105201 - MER57B LTR ERV1 -253 181 39 1963 108 12 52 chr3 87932177 87932501 -130104657 - AluSx SINE Alu 0 312 2 245 259 61 75 chr3 87934494 87934641 -130102517 - L1ME4a LINE L1 -3 6118 5974 209 281 18 18 chr3 87934743 87934800 -130102358 + L2 LINE L2 2736 2792 -522 1073 225 81 45 chr3 87934805 87935139 -130102019 - MLT1A1 LTR MaLR -15 350 5 310 314 117 11 chr3 87935149 87935337 -130101821 + L2 LINE L2 2804 3011 -302 538 300 13 9 chr3 87936092 87936319 -130100839 + L1PBa LINE L1 125 352 -6511 2175 66 11 3 chr3 87936319 87936606 -130100552 - LTR2B LTR ERV1 0 490 202 202 316 102 43 chr3 87936949 87937205 -130099953 + L2 LINE L2 2811 3081 -191 1230 232 72 50 chr3 87937230 87937687 -130099471 - MLT1C LTR MaLR 0 467 1 216 0 0 0 chr3 88039125 88039149 -129998009 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 261 119 0 0 chr3 88039148 88039190 -129997968 + (CA)n Simple_repeat Simple_repeat 1 42 0 2055 124 3 0 chr3 88039988 88040278 -129996880 + AluSp SINE Alu 1 291 -22 3435 146 19 23 chr3 88040293 88040911 -129996247 - L1MA7 LINE L1 -1 6290 5675 1781 187 3 0 chr3 88041541 88041846 -129995312 - AluJo SINE Alu -6 306 1 382 243 27 81 chr3 88043570 88043718 -129993440 + MIR3 SINE MIR 20 159 -49 505 264 160 9 chr3 88043995 88044207 -129992951 - MIR SINE MIR -18 244 1 540 157 52 7 chr3 88044400 88044625 -129992533 + AluJb SINE Alu 1 304 -8 659 309 48 5 chr3 88044676 88044883 -129992275 + MIR SINE MIR 45 260 -2 22 35 0 0 chr3 88047139 88047168 -129989990 + AT_rich Low_complexity Low_complexity 1 29 0 465 264 133 17 chr3 88047598 88047833 -129989325 - MIR SINE MIR 0 262 4 253 226 0 0 chr3 88049951 88050013 -129987145 + T-rich Low_complexity Low_complexity 1 62 0 227 310 0 0 chr3 88050026 88050084 -129987074 + MIR SINE MIR 204 261 -1 1528 211 90 26 chr3 88050091 88050148 -129987010 - MLT1D LTR MaLR 0 505 453 3362 139 9 21 chr3 88050148 88050681 -129986477 - MER1A DNA MER1_type 0 527 1 1528 211 90 26 chr3 88050681 88051011 -129986147 - MLT1D LTR MaLR -52 453 93 1870 206 52 48 chr3 88051018 88051518 -129985640 - MLT1D LTR MaLR -3 502 1 834 279 78 65 chr3 88052538 88052951 -129984207 - LTR16B LTR ERVL -7 457 40 230 308 55 7 chr3 88053202 88053348 -129983810 - L1MC/D LINE L1 -434 5925 5773 193 250 23 0 chr3 88053348 88053392 -129983766 - MIR3 SINE MIR -158 50 6 21 36 0 0 chr3 88056922 88056950 -129980208 + AT_rich Low_complexity Low_complexity 1 28 0 276 30 0 0 chr3 88057921 88057954 -129979204 + (TG)n Simple_repeat Simple_repeat 2 34 0 252 0 0 0 chr3 88057953 88057981 -129979177 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 998 116 0 19 chr3 88058345 88058500 -129978658 - AluSg/x SINE Alu -2 308 157 1658 128 4 4 chr3 88058505 88058747 -129978411 - AluSx SINE Alu -68 244 3 208 301 32 11 chr3 88058840 88058933 -129978225 + GA-rich Low_complexity Low_complexity 2 96 0 197 294 17 0 chr3 88059106 88059225 -129977933 + CT-rich Low_complexity Low_complexity 3 123 0 377 273 60 79 chr3 88059371 88059587 -129977571 - L2 LINE L2 -54 3259 3048 461 200 15 23 chr3 88059607 88059737 -129977421 - L1ME3 LINE L1 0 6162 6034 409 333 57 4 chr3 88060301 88060529 -129976629 - L2 LINE L2 -221 3051 2812 792 193 78 18 chr3 88062901 88063067 -129974091 + MER45A DNA AcHobo 1 176 -2 1850 113 0 0 chr3 88063802 88064050 -129973108 + AluSx SINE Alu 49 296 -16 1597 179 106 3 chr3 88065868 88066170 -129970988 + MLT1A1 LTR MaLR 32 364 -1 203 171 0 0 chr3 88066181 88066222 -129970936 + (TA)n Simple_repeat Simple_repeat 2 42 0 2591 179 7 57 chr3 88068477 88069041 -129968117 - MER87 LTR ERV1 0 541 6 630 194 90 0 chr3 88069032 88069166 -129967992 + MER20 DNA MER1_type 70 215 -4 * 1678 181 133 68 chr3 88070635 88071293 -129965865 - LTR48 LTR ERV1 -2 642 1 579 237 39 114 chr3 88071648 88071856 -129965302 + LTR37A LTR ERV1 22 181 -245 2027 125 0 17 chr3 88071856 88072151 -129965007 - AluY SINE Alu -21 290 1 579 237 39 114 chr3 88072151 88072380 -129964778 + LTR37A LTR ERV1 181 426 0 302 309 69 17 chr3 88072383 88072558 -129964600 + Charlie8 DNA MER1_type 97 280 -2137 281 263 99 35 chr3 88073187 88073358 -129963800 - L1ME LINE L1 -577 5587 5406 968 174 0 98 chr3 88073635 88073870 -129963288 - AluJo SINE Alu -16 296 85 706 153 44 12 chr3 88073935 88074128 -129963030 - ORSL DNA AcHobo 0 275 25 22 56 0 0 chr3 88074130 88074166 -129962992 + AT_rich Low_complexity Low_complexity 1 36 0 732 160 8 0 chr3 88074483 88074608 -129962550 - L1MA2 LINE L1 0 6304 6179 22 0 0 0 chr3 88074787 88074809 -129962349 + AT_rich Low_complexity Low_complexity 1 22 0 494 292 50 10 chr3 88075267 88075469 -129961689 - L1ME LINE L1 -372 5749 5540 195 293 245 9 chr3 88075536 88075598 -129961560 + MER5A DNA MER1_type 37 83 -106 1606 125 6 144 chr3 88075598 88075951 -129961207 - AluY SINE Alu -7 304 1 195 293 245 9 chr3 88075951 88075994 -129961164 + MER5A DNA MER1_type 83 167 -22 377 303 6 25 chr3 88076055 88076217 -129960941 + L2 LINE L2 2134 2292 -1022 373 330 140 54 chr3 88076314 88077033 -129960125 + L2 LINE L2 2302 3074 -198 233 393 17 17 chr3 88077076 88077193 -129959965 - L2 LINE L2 -1 3271 3155 1880 142 106 6 chr3 88077463 88077802 -129959356 + MER83C LTR ERV1 1 373 0 790 119 13 38 chr3 88078952 88079111 -129958047 - L1MA7 LINE L1 -2 6289 6135 2189 149 20 13 chr3 88079132 88079522 -129957636 + L1M2 LINE L1 5339 5731 -560 664 195 69 0 chr3 88080544 88080705 -129956453 - MER63A DNA MER1_type 0 210 38 691 274 41 35 chr3 88081000 88081314 -129955844 + L2 LINE L2 2643 2958 -356 182 103 0 26 chr3 88081902 88081941 -129955217 + (TA)n Simple_repeat Simple_repeat 2 39 0 2106 101 7 36 chr3 88082027 88082333 -129954825 + AluSp SINE Alu 1 297 -16 226 358 26 20 chr3 88082334 88082485 -129954673 - MIR SINE MIR -70 192 41 803 229 165 4 chr3 88082833 88083099 -129954059 + MER5C DNA MER1_type 15 323 -1 489 243 65 0 chr3 88083108 88083215 -129953943 + MER81 DNA DNA 1 114 0 1361 218 38 33 chr3 88083582 88084011 -129953147 + MLT2B1 LTR ERVL 1 477 -43 355 325 117 12 chr3 88085095 88085258 -129951900 + MIR SINE MIR 13 192 -70 353 263 13 0 chr3 88085270 88085346 -129951812 - L2 LINE L2 -2 3311 3235 21 36 0 0 chr3 88085468 88085496 -129951662 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 88086002 88086030 -129951128 + AT_rich Low_complexity Low_complexity 1 28 0 271 127 32 0 chr3 88086123 88086186 -129950972 + (CA)n Simple_repeat Simple_repeat 2 66 0 322 226 60 0 chr3 88087402 88087486 -129949672 - L1ME3A LINE L1 -24 6146 6058 213 309 29 0 chr3 88087549 88087617 -129949541 - MIR SINE MIR -179 83 14 355 291 153 30 chr3 88087859 88088062 -129949096 + MIR SINE MIR 21 248 -14 180 0 0 0 chr3 88089326 88089346 -129947812 + (TA)n Simple_repeat Simple_repeat 2 21 0 22 35 0 0 chr3 88091020 88091049 -129946109 + AT_rich Low_complexity Low_complexity 1 29 0 2229 135 8 8 chr3 88092138 88092493 -129944665 - THE1A LTR MaLR 0 355 1 451 264 36 75 chr3 88092528 88092753 -129944405 - MIR SINE MIR -2 260 45 348 233 217 0 chr3 88093005 88093125 -129944033 - MIR3 SINE MIR -7 201 56 * 942 151 0 0 chr3 88093123 88093262 -129943896 - AluSg/x SINE Alu -37 273 135 3756 186 42 3 chr3 88093453 88094263 -129942895 + L1MD1 LINE L1 5210 6050 -192 2085 207 63 14 chr3 88094297 88094742 -129942416 - LTR53 LTR ERVL -52 467 1 499 234 9 0 chr3 88094743 88094854 -129942304 + L1MD1 LINE L1 6046 6157 -85 516 316 13 7 chr3 88095414 88095569 -129941589 + MIR SINE MIR 3 158 -104 1793 156 0 11 chr3 88095599 88095874 -129941284 - AluJo SINE Alu -30 282 11 240 350 10 0 chr3 88095883 88095980 -129941178 + MIR SINE MIR 150 247 -15 265 287 82 16 chr3 88096190 88096312 -129940846 - MIR SINE MIR -83 179 50 2204 131 0 0 chr3 88096507 88096819 -129940339 - AluSx SINE Alu 0 312 1 343 198 99 0 chr3 88098279 88098370 -129938788 + MER53 DNA DNA 1 100 -89 202 211 0 0 chr3 88098389 88098427 -129938731 + T-rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr3 88098687 88098708 -129938450 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 88098940 88098961 -129938197 + AT_rich Low_complexity Low_complexity 1 21 0 504 348 46 76 chr3 88099322 88099690 -129937468 + L2 LINE L2 2914 3270 -2 23 33 0 0 chr3 88100238 88100268 -129936890 + AT_rich Low_complexity Low_complexity 1 30 0 1548 185 61 6 chr3 88101197 88101527 -129935631 + MER7A DNA MER2_type 1 346 0 24 0 0 0 chr3 88101688 88101712 -129935446 + AT_rich Low_complexity Low_complexity 1 24 0 547 271 96 36 chr3 88102313 88102564 -129934594 + L2 LINE L2 3048 3313 0 1914 255 20 62 chr3 88102607 88103270 -129933888 - MER92B LTR ERV1 -1 635 1 551 273 165 37 chr3 88103650 88104216 -129932942 + L2 LINE L2 2398 3313 0 1236 169 91 20 chr3 88104450 88104704 -129932454 - AluJb SINE Alu -6 306 35 22 35 0 0 chr3 88105416 88105445 -129931713 + AT_rich Low_complexity Low_complexity 1 29 0 482 273 29 54 chr3 88105520 88105798 -129931360 + L1ME LINE L1 5535 5805 -316 226 333 10 0 chr3 88106140 88106236 -129930922 + Charlie8 DNA MER1_type 119 215 -2202 296 239 174 43 chr3 88107379 88107517 -129929641 + MLT1K LTR MaLR 407 562 -26 2144 140 27 30 chr3 88107747 88108112 -129929046 - THE1B LTR MaLR 0 364 1 2180 116 3 7 chr3 88108205 88108506 -129928652 - AluSg SINE Alu -10 300 1 1189 214 38 19 chr3 88108521 88108783 -129928375 - AluJb SINE Alu -45 267 1 345 346 45 6 chr3 88108973 88109129 -129928029 - MIR SINE MIR -53 209 48 461 273 134 32 chr3 88109200 88109387 -129927771 - MIR SINE MIR -56 206 1 21 0 0 0 chr3 88110286 88110307 -129926851 + AT_rich Low_complexity Low_complexity 1 21 0 471 215 77 0 chr3 88112395 88112525 -129924633 - MIR SINE MIR 0 262 123 1784 157 0 57 chr3 88112547 88112878 -129924280 + AluJo SINE Alu 1 312 0 2291 98 3 0 chr3 88113399 88113695 -129923463 - AluSp SINE Alu -16 297 1 356 278 26 26 chr3 88114846 88114961 -129922197 + L3 LINE CR1 953 1067 -510 550 307 53 18 chr3 88114998 88115223 -129921935 - MIR SINE MIR -28 234 2 363 321 172 30 chr3 88115341 88115643 -129921515 + L3 LINE CR1 1232 1576 -1 254 300 81 17 chr3 88115794 88115925 -129921233 - MIR SINE MIR -63 145 33 592 303 167 19 chr3 88116421 88116911 -129920247 - L2 LINE L2 -50 3263 2698 6511 146 26 16 chr3 88117032 88117628 -129919530 + L1MA2 LINE L1 4415 5004 -1300 1920 158 19 46 chr3 88117628 88118001 -129919157 - THE1B LTR MaLR 0 364 2 11561 91 10 1 chr3 88118002 88119568 -129917590 - THE1B-int LTR MaLR 0 1580 1 2129 129 27 30 chr3 88119568 88119933 -129917225 - THE1B LTR MaLR 0 364 1 6511 146 26 16 chr3 88119933 88121206 -129915952 + L1MA2 LINE L1 5003 6304 0 384 240 302 0 chr3 88122333 88122462 -129914696 + MER5A DNA MER1_type 9 176 -13 420 200 185 22 chr3 88122495 88122630 -129914528 + MER5B DNA MER1_type 19 175 -3 2421 88 0 0 chr3 88124024 88124330 -129912828 - AluY SINE Alu -5 306 1 720 237 23 23 chr3 88125139 88125312 -129911846 - MLT1K LTR MaLR -16 572 400 415 340 64 39 chr3 88125414 88125617 -129911541 - MLT1K LTR MaLR -367 221 14 1069 209 33 0 chr3 88126554 88126765 -129910393 - MER20 DNA MER1_type -1 218 1 29 47 0 0 chr3 88127514 88127557 -129909601 + AT_rich Low_complexity Low_complexity 1 43 0 369 105 48 9 chr3 88128310 88128415 -129908743 + (TA)n Simple_repeat Simple_repeat 2 110 0 182 172 0 0 chr3 88128802 88128831 -129908327 - MIR SINE MIR -60 148 120 641 217 6 34 chr3 88129475 88129650 -129907508 + MER96B DNA MER1_type? 14 183 -234 1310 184 9 95 chr3 88129650 88129966 -129907192 - AluJo SINE Alu -23 289 1 614 223 199 14 chr3 88130553 88130721 -129906437 - L1MD2 LINE L1 -17 6342 6126 222 37 0 0 chr3 88130721 88130748 -129906410 + (TG)n Simple_repeat Simple_repeat 2 28 0 614 223 199 14 chr3 88130748 88130790 -129906368 - L1MD2 LINE L1 -233 6126 6093 854 306 103 14 chr3 88131060 88131429 -129905729 + MLT1I LTR MaLR 1 402 -7 274 171 24 110 chr3 88131757 88131839 -129905319 + MER58B DNA MER1_type 252 326 -15 293 301 33 39 chr3 88131860 88132013 -129905145 + MLT1J LTR MaLR 325 476 -35 383 355 81 48 chr3 88133426 88134114 -129903044 + L2 LINE L2 2492 3221 -51 183 162 0 0 chr3 88134129 88134166 -129902992 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 199 292 219 7 chr3 88134392 88134529 -129902629 - MIR SINE MIR -38 224 59 333 0 0 0 chr3 88135503 88135540 -129901618 + (CA)n Simple_repeat Simple_repeat 2 38 0 413 313 171 5 chr3 88135615 88135832 -129901326 + MIR SINE MIR 6 258 -4 234 299 31 55 chr3 88137046 88137173 -129899985 + MLT1J LTR MaLR 99 222 -289 331 309 6 31 chr3 88137278 88137440 -129899718 + MLT1J LTR MaLR 354 511 0 4309 200 27 55 chr3 88137535 88137779 -129899379 + L1MB4 LINE L1 4004 4253 -1927 393 22 0 0 chr3 88137779 88137825 -129899333 + (CA)n Simple_repeat Simple_repeat 1 46 0 4309 200 27 55 chr3 88137825 88138930 -129898228 + L1MB4 LINE L1 4253 5279 -901 1589 179 7 37 chr3 88138930 88139227 -129897931 - AluJo SINE Alu -21 291 4 4309 200 27 55 chr3 88139227 88139860 -129897298 + L1MB4 LINE L1 5279 5928 -252 1360 213 14 66 chr3 88139865 88140047 -129897111 - MLT1A1 LTR MaLR -5 360 170 360 43 0 0 chr3 88140047 88140093 -129897065 + (GA)n Simple_repeat Simple_repeat 1 46 0 1360 213 14 66 chr3 88140093 88140149 -129897009 - MLT1A1 LTR MaLR -195 170 113 3180 101 16 0 chr3 88140149 88140595 -129896563 - MLT2A2 LTR ERVL 0 453 1 1360 213 14 66 chr3 88140595 88140721 -129896437 - MLT1A1 LTR MaLR -252 113 14 1221 135 84 25 chr3 88140725 88140807 -129896351 + L1MB4 LINE L1 5924 6000 -180 2730 99 0 0 chr3 88140807 88141171 -129895987 - THE1B LTR MaLR 0 364 1 1221 135 84 25 chr3 88141171 88141325 -129895833 + L1MB4 LINE L1 6000 6174 -6 25 51 0 0 chr3 88141372 88141411 -129895747 + AT_rich Low_complexity Low_complexity 1 39 0 25 51 0 0 chr3 88141821 88141860 -129895298 + AT_rich Low_complexity Low_complexity 1 39 0 43271 49 1 0 chr3 88143786 88149937 -129887221 - L1PA4 LINE L1 0 6155 1 1113 282 34 13 chr3 88149938 88150466 -129886692 + L1M4 LINE L1 2612 3150 -2996 1261 270 97 26 chr3 88150516 88151215 -129885943 + L1M4 LINE L1 3504 4252 -1894 552 249 113 27 chr3 88151220 88151441 -129885717 + L1ME3A LINE L1 5927 6166 -4 240 303 15 0 chr3 88151497 88151563 -129885595 - MIR SINE MIR -71 191 125 467 116 163 0 chr3 88152875 88152961 -129884197 + HY3 scRNA scRNA 1 100 -1 1014 84 0 0 chr3 88152977 88153119 -129884039 + (GAA)n Simple_repeat Simple_repeat 3 144 0 296 350 21 21 chr3 88153220 88153363 -129883795 + L2 LINE L2 3171 3313 0 2733 200 26 6 chr3 88153457 88153986 -129883172 - MER68 LTR ERV1 -22 540 1 25 31 0 0 chr3 88154511 88154543 -129882615 + AT_rich Low_complexity Low_complexity 1 32 0 460 276 72 58 chr3 88154677 88155089 -129882069 + MLT1H LTR MaLR 54 505 -44 503 326 142 23 chr3 88155822 88156166 -129880992 - MLT1J2 LTR MaLR -2 448 64 469 300 54 8 chr3 88156462 88156592 -129880566 - MIR SINE MIR -93 169 34 239 242 16 16 chr3 88157292 88157354 -129879804 - MLT1J1 LTR MaLR -319 127 66 23 0 0 0 chr3 88157532 88157555 -129879603 + AT_rich Low_complexity Low_complexity 1 23 0 226 258 0 0 chr3 88159890 88159952 -129877206 + L1MC4 LINE L1 6642 6703 -1339 713 239 52 0 chr3 88159978 88160133 -129877025 - MER58B DNA MER1_type -6 335 173 7502 135 17 6 chr3 88160319 88161523 -129875635 - Tigger1 DNA MER2_type 0 2418 1201 1738 150 0 81 chr3 88161523 88161726 -129875432 - AluSx SINE Alu -1 311 144 624 110 0 28 chr3 88161726 88161835 -129875323 - L1PB1 LINE L1 -3 6148 6043 1738 150 0 81 chr3 88161835 88161965 -129875193 - AluSx SINE Alu -168 144 5 307 148 0 66 chr3 88161969 88162030 -129875128 - Tigger1 DNA MER2_type -1204 1214 1158 6439 157 51 3 chr3 88162030 88163164 -129873994 - Tigger1 DNA MER2_type -1229 1189 1 234 304 9 61 chr3 88163187 88163302 -129873856 + MIR SINE MIR 104 212 -50 760 172 15 56 chr3 88164953 88165151 -129872007 - MER69 DNA AcHobo -18 2508 2319 1374 225 81 53 chr3 88165173 88165608 -129871550 - MER69 DNA AcHobo -2079 447 1 2291 122 0 0 chr3 88165675 88165986 -129871172 + AluSx SINE Alu 1 311 -1 3443 112 6 22 chr3 88167218 88167284 -129869874 + L1PA14 LINE L1 5625 5691 -470 2057 132 0 0 chr3 88167284 88167609 -129869549 + AluSx SINE Alu 1 325 0 3443 112 6 22 chr3 88167609 88168085 -129869073 + L1PA14 LINE L1 5691 6159 -2 197 322 144 17 chr3 88168313 88168431 -129868727 - MIR SINE MIR -118 144 12 225 0 0 0 chr3 88168490 88168515 -129868643 + (A)n Simple_repeat Simple_repeat 1 25 0 717 286 89 0 chr3 88168769 88168982 -129868176 + MIR SINE MIR 5 236 -26 211 385 11 0 chr3 88169585 88169676 -129867482 - L2 LINE L2 -507 2807 2716 262 231 0 125 chr3 88169710 88169814 -129867344 + Charlie4 DNA MER1_type 1 91 -1870 896 166 34 10 chr3 88169815 88170020 -129867138 + Charlie4 DNA MER1_type 1751 1960 -1 450 308 54 33 chr3 88170505 88170745 -129866413 + MLT1K LTR MaLR 220 464 -124 31 44 0 0 chr3 88170788 88170833 -129866325 + AT_rich Low_complexity Low_complexity 1 45 0 204 346 7 73 chr3 88171101 88171161 -129865997 + MER5A DNA MER1_type 13 75 -114 2026 228 75 24 chr3 88171161 88171735 -129865423 - LTR26 LTR ERV1 0 603 1 204 346 7 73 chr3 88171735 88171810 -129865348 + MER5A DNA MER1_type 75 139 -50 211 315 108 18 chr3 88172012 88172123 -129865035 - MER5A DNA MER1_type -9 180 60 185 256 0 23 chr3 88172404 88172447 -129864711 + MER5A DNA MER1_type 142 183 -6 473 248 171 40 chr3 88173868 88174090 -129863068 - MLT2F LTR ERVL 0 663 413 307 287 63 14 chr3 88174152 88174295 -129862863 - MER117 DNA MER1_type -42 155 6 611 312 108 47 chr3 88174785 88175314 -129861844 - L3 LINE CR1 -211 1366 806 208 373 0 0 chr3 88175515 88175574 -129861584 + L2 LINE L2 3153 3211 -61 355 231 33 0 chr3 88175620 88175711 -129861447 - MIR SINE MIR -50 212 119 313 218 73 18 chr3 88175847 88175957 -129861201 - L1MB1 LINE L1 -160 6008 5893 * 738 150 50 25 chr3 88175941 88176101 -129861057 + L1MA7 LINE L1 6101 6264 -27 1562 150 44 15 chr3 88176225 88176499 -129860659 - L1PA15 LINE L1 -1 6164 5883 1262 160 55 0 chr3 88176582 88176820 -129860338 + L1MA3 LINE L1 6036 6286 -19 5495 239 55 33 chr3 88177911 88179678 -129857480 - L1M4c LINE L1 -4822 1824 16 25 75 0 0 chr3 88179805 88179858 -129857300 + AT_rich Low_complexity Low_complexity 1 53 0 24 53 0 0 chr3 88180011 88180049 -129857109 + AT_rich Low_complexity Low_complexity 1 38 0 984 235 58 56 chr3 88180401 88180767 -129856391 + MLT1C LTR MaLR 1 377 -90 1468 75 0 0 chr3 88180767 88180955 -129856203 + MER9 LTR ERVK 1 188 -323 20020 39 0 0 chr3 88180955 88184176 -129852982 - L1PA4 LINE L1 0 6155 2934 3016 109 0 0 chr3 88184176 88184588 -129852570 - L1P LINE L1 -5731 415 4 2465 93 0 12 chr3 88184588 88184932 -129852226 + MER9 LTR ERVK 172 511 0 697 122 0 19 chr3 88184932 88185028 -129852130 + MLT1C LTR MaLR 374 467 0 21 82 0 0 chr3 88185166 88185215 -129851943 + AT_rich Low_complexity Low_complexity 1 49 0 345 255 82 43 chr3 88185249 88185433 -129851725 - LTR48 LTR ERV1 -2 785 595 303 164 55 14 chr3 88185439 88185512 -129851646 - LTR48 LTR ERV1 -302 485 410 308 292 37 11 chr3 88185608 88185735 -129851423 - LTR48 LTR ERV1 -484 101 5 714 222 126 17 chr3 88186212 88186442 -129850716 + MIR SINE MIR 1 255 -7 954 191 46 16 chr3 88186552 88186746 -129850412 - MER20 DNA MER1_type 0 219 20 1526 198 3 20 chr3 88186746 88187044 -129850114 - AluJo SINE Alu -15 297 5 228 305 12 37 chr3 88187263 88187345 -129849813 + L2 LINE L2 3193 3272 0 361 307 206 7 chr3 88187402 88187593 -129849565 - MIR SINE MIR -18 244 23 628 285 140 0 chr3 88189094 88189322 -129847836 - MIR SINE MIR -1 261 2 1350 287 40 19 chr3 88189467 88189997 -129847161 + L1ME3A LINE L1 5610 6150 -20 201 167 0 0 chr3 88192451 88192460 -129844698 + (CA)n Simple_repeat Simple_repeat 2 10 -33 192 40 0 0 chr3 88192460 88192485 -129844673 + (TC)n Simple_repeat Simple_repeat 1 25 0 201 167 0 0 chr3 88192485 88192517 -129844641 + (CA)n Simple_repeat Simple_repeat 9 43 0 504 331 72 0 chr3 88193094 88193275 -129843883 + MIR SINE MIR 44 237 -25 228 388 0 0 chr3 88193816 88193901 -129843257 - L2 LINE L2 -6 3307 3223 406 302 158 0 chr3 88193963 88194102 -129843056 + MIR SINE MIR 2 162 -100 254 283 58 92 chr3 88194244 88194380 -129842778 - L2 LINE L2 -491 2823 2684 1361 173 34 68 chr3 88194380 88194675 -129842483 + AluJb SINE Alu 1 285 -17 1059 158 40 81 chr3 88194390 88194709 -129842449 + AluJo SINE Alu 11 319 0 254 283 58 92 chr3 88194675 88194811 -129842347 - L2 LINE L2 -630 2684 2592 * 180 375 55 16 chr3 88195746 88195874 -129841284 - MIR SINE MIR -17 245 113 453 273 86 34 chr3 88196040 88196366 -129840792 + L1ME3A LINE L1 5574 5916 -205 1994 147 0 0 chr3 88199129 88199421 -129837737 - AluSg SINE Alu -18 292 1 580 320 115 50 chr3 88199907 88200351 -129836807 - L2 LINE L2 -4 3309 2837 355 295 98 23 chr3 88201559 88201732 -129835426 - MER117 DNA MER1_type -8 189 4 1549 230 91 104 chr3 88201736 88202105 -129835053 + L1ME3A LINE L1 5335 5707 -463 2126 141 31 3 chr3 88202105 88202459 -129834699 + THE1B LTR MaLR 1 364 0 1549 230 91 104 chr3 88202459 88202915 -129834243 + L1ME3A LINE L1 5707 6149 -21 2855 3 0 0 chr3 88203584 88203892 -129833266 + AluYa5 SINE Alu 1 308 -3 44 35 0 0 chr3 88204598 88204656 -129832502 + AT_rich Low_complexity Low_complexity 1 58 0 1447 163 44 72 chr3 88205362 88205682 -129831476 - AluJo SINE Alu -1 311 1 377 287 20 20 chr3 88206786 88206887 -129830271 + MER5A DNA MER1_type 9 109 -80 368 320 87 41 chr3 88207485 88207704 -129829454 + L1ME3A LINE L1 5934 6162 -8 223 269 231 27 chr3 88207986 88208172 -129828986 + MIR SINE MIR 2 225 -37 259 230 46 23 chr3 88208493 88208580 -129828578 + L1MC5 LINE L1 7816 7904 -57 369 255 64 42 chr3 88208753 88208969 -129828189 - L1MC/D LINE L1 -799 5347 5236 36 53 0 0 chr3 88209134 88209191 -129827967 + AT_rich Low_complexity Low_complexity 1 57 0 2442 119 11 3 chr3 88209732 88210093 -129827065 - THE1B LTR MaLR 0 364 1 2123 112 0 36 chr3 88210877 88211181 -129825977 - AluSg SINE Alu -17 293 1 191 327 97 26 chr3 88211692 88211805 -129825353 + L2 LINE L2 2233 2353 -961 1656 197 77 3 chr3 88211958 88212298 -129824860 - MLT1A1 LTR MaLR 0 365 1 2225 93 13 22 chr3 88212387 88212700 -129824458 - AluY SINE Alu 0 311 2 2217 259 28 24 chr3 88213405 88214087 -129823071 + MER76 LTR ERV 4 688 0 1127 273 108 24 chr3 88214099 88214564 -129822594 + MLT1J LTR MaLR 5 508 -3 2205 149 36 72 chr3 88215137 88215494 -129821664 + MSTA LTR MaLR 1 340 -88 474 61 0 0 chr3 88215494 88215560 -129821598 - L1PA6 LINE L1 0 6154 6089 2205 149 36 72 chr3 88215560 88215646 -129821512 + MSTA LTR MaLR 340 428 0 2435 52 0 49 chr3 88216466 88216792 -129820366 - AluY SINE Alu -1 310 1 615 224 112 29 chr3 88217488 88217658 -129819500 - MER5A DNA MER1_type 0 189 6 1785 142 24 30 chr3 88218043 88218339 -129818819 - AluSx SINE Alu -18 294 1 226 261 185 11 chr3 88219079 88219171 -129817987 - L2 LINE L2 0 3313 3206 652 329 121 24 chr3 88219246 88219841 -129817317 - L2 LINE L2 -353 2961 2262 2800 87 3 11 chr3 88220797 88221175 -129815983 - THE1C LTR MaLR 0 375 1 9983 112 33 36 chr3 88221175 88222742 -129814416 - THE1C-int LTR MaLR 0 1580 19 2613 104 0 29 chr3 88222753 88223139 -129814019 - THE1C LTR MaLR 0 375 1 1785 187 24 6 chr3 88223147 88223484 -129813674 - MER2 DNA MER2_type -1 343 1 330 152 33 0 chr3 88223559 88223651 -129813507 + (TA)n Simple_repeat Simple_repeat 2 96 0 216 313 24 24 chr3 88223705 88223788 -129813370 - MIR SINE MIR -168 94 12 21 0 0 0 chr3 88224778 88224799 -129812359 + AT_rich Low_complexity Low_complexity 1 21 0 1910 31 4 50 chr3 88225178 88225437 -129811721 - L1PA5 LINE L1 -8 6146 5900 443 324 41 97 chr3 88226953 88227460 -129809698 - L1MEd LINE L1 -5343 776 298 329 26 0 0 chr3 88227719 88227757 -129809401 + THE1B LTR MaLR 1 38 -326 2405 120 23 0 chr3 88227757 88228099 -129809059 + THE1B LTR MaLR 15 364 0 181 267 0 100 chr3 88229220 88229280 -129807878 + L2 LINE L2 3256 3309 -4 382 263 53 26 chr3 88229728 88229842 -129807316 + L2 LINE L2 3197 3313 0 26 0 0 0 chr3 88229987 88230013 -129807145 + AT_rich Low_complexity Low_complexity 1 26 0 2001 132 25 0 chr3 88230087 88230367 -129806791 - AluSg SINE Alu -23 287 1 2310 108 0 0 chr3 88230376 88230673 -129806485 - AluSg SINE Alu -13 297 1 21 57 0 0 chr3 88230680 88230715 -129806443 + AT_rich Low_complexity Low_complexity 1 35 0 2096 131 7 0 chr3 88231086 88231391 -129805767 + AluSg SINE Alu 1 307 -3 312 276 118 16 chr3 88231451 88231578 -129805580 - MIR3 SINE MIR -21 187 48 329 314 70 19 chr3 88231877 88232033 -129805125 + L1MC/D LINE L1 5534 5697 -424 1626 133 121 3 chr3 88232355 88232678 -129804480 - MER46B DNA MER2_type 0 236 1 988 180 73 0 chr3 88233487 88233665 -129803493 - MER58A DNA MER1_type 0 224 34 1100 133 0 0 chr3 88234595 88234753 -129802405 - THE1C LTR MaLR 0 375 218 781 109 0 0 chr3 88234750 88234860 -129802298 - THE1C LTR MaLR -265 110 1 * 23 86 0 0 chr3 88235103 88235161 -129801997 + AT_rich Low_complexity Low_complexity 1 58 0 487 180 0 30 chr3 88235508 88235608 -129801550 - MER39 LTR ERV1 0 707 611 202 97 32 0 chr3 88235609 88235640 -129801518 + GA-rich Low_complexity Low_complexity 1 32 0 360 304 104 36 chr3 88235685 88235905 -129801253 + L2 LINE L2 3079 3313 0 1754 171 10 7 chr3 88236013 88236311 -129800847 - AluJb SINE Alu -13 299 1 330 313 46 0 chr3 88236643 88236774 -129800384 - MIR SINE MIR -2 260 124 282 291 40 73 chr3 88237077 88237228 -129799930 - L2 LINE L2 0 3313 3168 1692 186 27 0 chr3 88238760 88239055 -129798103 - AluJo SINE Alu -9 303 1 2060 214 74 40 chr3 88239175 88239798 -129797360 - LTR48B LTR ERV1 0 644 1 591 260 104 60 chr3 88240399 88240649 -129796509 - MLT1H1 LTR MaLR -294 261 1 226 161 0 161 chr3 88241190 88241277 -129795881 - L1ME4a LINE L1 -88 6033 5961 253 304 14 7 chr3 88241376 88241514 -129795644 - L1ME4a LINE L1 -1988 5820 5682 1587 151 17 17 chr3 88242101 88242392 -129794766 + L1MA7 LINE L1 5999 6289 -2 1942 134 20 0 chr3 88243243 88243541 -129793617 + AluSx SINE Alu 1 304 -8 192 221 29 44 chr3 88243561 88243629 -129793529 - MIR SINE MIR -19 243 177 180 0 0 0 chr3 88243680 88243700 -129793458 + (GA)n Simple_repeat Simple_repeat 2 21 0 274 311 85 0 chr3 88243701 88243807 -129793351 - MIR SINE MIR -77 185 71 2366 99 0 3 chr3 88243851 88244163 -129792995 - AluSq SINE Alu -2 311 1 231 167 0 0 chr3 88245520 88245562 -129791596 + (CA)n Simple_repeat Simple_repeat 1 42 0 1817 172 0 0 chr3 88245570 88245849 -129791309 - AluJb SINE Alu -24 288 10 188 114 23 45 chr3 88245915 88245959 -129791199 + L2 LINE L2 3189 3231 -82 473 337 31 5 chr3 88246113 88246306 -129790852 - MIR SINE MIR -16 246 49 29 70 0 0 chr3 88247473 88247530 -129789628 + AT_rich Low_complexity Low_complexity 1 57 0 396 325 45 7 chr3 88247761 88247915 -129789243 + MIR SINE MIR 21 180 -82 714 188 0 8 chr3 88247921 88248049 -129789109 - FLAM_C SINE Alu -12 131 5 199 259 173 0 chr3 88248063 88248144 -129789014 + MIR SINE MIR 168 262 0 373 336 22 0 chr3 88248463 88248600 -129788558 - MIR SINE MIR -87 175 36 23 33 0 0 chr3 88250337 88250367 -129786791 + AT_rich Low_complexity Low_complexity 1 30 0 292 280 52 18 chr3 88250577 88250706 -129786452 - MIR SINE MIR -58 150 34 478 170 10 40 chr3 88251385 88251485 -129785673 + MLT1A1 LTR MaLR 1 97 -277 * 709 135 15 45 chr3 88251483 88251616 -129785542 + MLT1A1 LTR MaLR 237 365 0 190 226 202 0 chr3 88253515 88253599 -129783559 + L2 LINE L2 3108 3208 -105 518 107 12 0 chr3 88254401 88254485 -129782673 + L1PA15 LINE L1 6076 6160 -5 255 133 0 0 chr3 88255870 88255915 -129781243 + (A)n Simple_repeat Simple_repeat 1 45 0 182 354 51 0 chr3 88256267 88256346 -129780812 - MIR SINE MIR -2 260 178 2115 170 17 7 chr3 88256448 88256860 -129780298 + L1MB2 LINE L1 5752 6167 -4 746 290 16 63 chr3 88257070 88257387 -129779771 + MLT1I LTR MaLR 101 402 -7 301 150 34 17 chr3 88257995 88258076 -129779082 + L1ME4a LINE L1 5727 5808 -356 416 191 85 21 chr3 88258147 88258288 -129778870 + L1ME4a LINE L1 5961 6110 -11 1518 101 55 0 chr3 88258911 88259129 -129778029 + MER30 DNA MER1_type 1 230 0 472 228 97 79 chr3 88259512 88259903 -129777255 - MER113 DNA MER1_type? -119 402 5 14341 198 24 7 chr3 88260119 88266224 -129770934 + L1PB1 LINE L1 7 6500 -367 201 74 0 0 chr3 88266224 88266251 -129770907 + (CATATA)n Simple_repeat Simple_repeat 2 28 0 14341 198 24 7 chr3 88266251 88266618 -129770540 + L1PB1 LINE L1 6500 6859 -8 2261 94 39 19 chr3 88266631 88266992 -129770166 + L1MA1 LINE L1 5935 6302 0 359 307 114 50 chr3 88267204 88267484 -129769674 + MLT1K LTR MaLR 131 428 -160 1021 280 166 50 chr3 88267487 88268146 -129769012 - L2 LINE L2 -9 3304 2513 1724 158 6 58 chr3 88268146 88268475 -129768683 - AluJb SINE Alu 0 312 1 1021 280 166 50 chr3 88268475 88268694 -129768464 - L2 LINE L2 -800 2513 2321 406 345 41 0 chr3 88269289 88269434 -129767724 - L2 LINE L2 -1 3271 3121 30 27 0 0 chr3 88269631 88269668 -129767490 + AT_rich Low_complexity Low_complexity 1 37 0 182 268 124 52 chr3 88269702 88269799 -129767359 - L3 LINE CR1 -29 1548 1445 504 276 165 14 chr3 88269969 88270214 -129766944 + MIR SINE MIR 1 262 0 23 54 0 0 chr3 88271156 88271193 -129765965 + AT_rich Low_complexity Low_complexity 1 37 0 449 329 0 7 chr3 88271222 88271359 -129765799 + MIR SINE MIR 83 218 -44 359 241 184 32 chr3 88272415 88272573 -129764585 - L2 LINE L2 -4 3309 3128 441 0 0 0 chr3 88272618 88272667 -129764491 + (TA)n Simple_repeat Simple_repeat 2 50 0 417 226 162 53 chr3 88273059 88273564 -129763594 + L1MEd LINE L1 703 1299 -4910 259 281 73 10 chr3 88273792 88273888 -129763270 + L2 LINE L2 3171 3272 0 858 276 57 35 chr3 88274438 88274753 -129762405 + LTR33 LTR ERVL 26 347 -174 2278 122 0 0 chr3 88274974 88275286 -129761872 - AluSx SINE Alu 0 312 1 408 244 165 0 chr3 88276478 88276593 -129760565 - MIR SINE MIR -66 196 63 418 303 8 17 chr3 88276603 88276722 -129760436 - L2 LINE L2 -2 3311 3194 1873 191 9 3 chr3 88276924 88277269 -129759889 - MER7A DNA MER2_type 0 346 2 1480 75 0 0 chr3 88277514 88277701 -129759457 - AluY SINE Alu -7 304 118 5172 52 0 2 chr3 88277728 88278363 -129758795 - L1PA5 LINE L1 -1 6153 5520 1088 68 8 0 chr3 88278373 88278505 -129758653 - AluY SINE Alu -177 134 2 2200 94 0 7 chr3 88279110 88279424 -129757734 + AluSp SINE Alu 1 312 0 649 270 52 9 chr3 88279426 88279637 -129757521 - MIR SINE MIR -35 227 8 284 391 14 7 chr3 88279961 88280099 -129757059 - MER5A DNA MER1_type -50 139 1 231 224 45 30 chr3 88280149 88280216 -129756942 - MLT1L LTR MaLR -12 603 536 1819 183 0 0 chr3 88280313 88280602 -129756556 - AluJb SINE Alu -23 289 1 383 261 241 25 chr3 88283487 88283690 -129753468 + MIR SINE MIR 10 256 -6 2590 116 65 23 chr3 88284146 88284577 -129752581 - MER4C LTR ERV1 -15 450 2 2101 103 38 7 chr3 88285442 88285734 -129751424 + AluSg SINE Alu 1 301 -9 1837 151 7 4 chr3 88285773 88286051 -129751107 + AluSx SINE Alu 22 300 -12 355 277 134 21 chr3 88286326 88286494 -129750664 + MIR SINE MIR 61 260 -2 279 205 8 16 chr3 88286502 88286629 -129750529 + (CCA)n Simple_repeat Simple_repeat 2 127 0 24 0 0 0 chr3 88286839 88286863 -129750295 + AT_rich Low_complexity Low_complexity 1 24 0 202 254 17 0 chr3 88286882 88286941 -129750217 + (TA)n Simple_repeat Simple_repeat 2 61 0 343 280 51 8 chr3 88287278 88287396 -129749762 + L2 LINE L2 3191 3313 0 1999 125 3 21 chr3 88290238 88290525 -129746633 + AluSx SINE Alu 1 282 -30 1428 252 60 7 chr3 88292061 88292478 -129744680 + L1ME3A LINE L1 5464 5902 -268 502 255 37 21 chr3 88292500 88292688 -129744470 + L1ME3A LINE L1 5963 6153 -17 21 57 0 0 chr3 88292809 88292844 -129744314 + AT_rich Low_complexity Low_complexity 1 35 0 408 342 119 55 chr3 88293625 88294028 -129743130 - L2 LINE L2 -2 3270 2842 754 228 72 83 chr3 88295540 88295910 -129741248 + MER113 DNA MER1_type? 1 374 -147 263 0 53 0 chr3 88295910 88295948 -129741210 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 1646 154 0 0 chr3 88295948 88296188 -129740970 - AluSx SINE Alu -28 284 45 754 228 72 83 chr3 88296188 88296273 -129740885 + MER113 DNA MER1_type? 372 452 -69 375 258 138 57 chr3 88296330 88296489 -129740669 + MER5B DNA MER1_type 1 172 -6 1701 292 93 9 chr3 88297131 88297679 -129739479 - MLT1G1 LTR MaLR -1 594 1 404 307 112 0 chr3 88297680 88297859 -129739299 + LTR33 LTR ERVL 24 222 -299 238 100 0 0 chr3 88298466 88298516 -129738642 + L1M LINE L1 5275 5327 -819 6585 183 41 38 chr3 88298526 88298999 -129738159 + L1MCa LINE L1 20 490 -5936 2567 55 0 10 chr3 88298999 88299309 -129737849 + AluY SINE Alu 1 307 -4 6585 183 41 38 chr3 88299309 88300325 -129736833 + L1MCa LINE L1 490 1514 -4912 1634 175 169 43 chr3 88300343 88300851 -129736307 - LTR49 LTR ERV1 -23 572 1 642 224 8 8 chr3 88300854 88300988 -129736170 - MLT1A1 LTR MaLR -231 134 1 2509 255 29 17 chr3 88300998 88301665 -129735493 + L1MCa LINE L1 2322 2959 -3467 3710 164 5 6 chr3 88301665 88302301 -129734857 + MER41B LTR ERV1 1 635 0 2509 255 29 17 chr3 88302301 88302559 -129734599 + L1MCa LINE L1 2959 3212 -3214 3541 159 21 30 chr3 88302559 88303502 -129733656 + L1PA16 LINE L1 4912 5832 -334 2140 64 0 11 chr3 88303504 88303770 -129733388 + AluY SINE Alu 34 296 -15 15641 44 2 12 chr3 88303770 88305755 -129731403 - L1P LINE L1 -3602 2544 579 7957 41 44 1 chr3 88305757 88307468 -129729690 + L1PA4 LINE L1 4405 6152 -3 313 336 80 16 chr3 88307650 88307775 -129729383 + L2 LINE L2 3132 3264 -8 1812 156 44 6 chr3 88307783 88308123 -129729035 + L1PA16 LINE L1 5814 6166 0 1655 261 44 7 chr3 88308167 88308777 -129728381 + L1MCa LINE L1 3195 3827 -2599 1596 134 67 0 chr3 88308777 88309016 -129728142 + AluSx SINE Alu 47 301 -11 6252 159 14 4 chr3 88309020 88310151 -129727007 + L1MC1 LINE L1 5186 6328 -5 1176 242 7 20 chr3 88310153 88310459 -129726699 + L1MB8 LINE L1 5877 6178 0 1693 124 102 0 chr3 88311035 88311309 -129725849 - AluSg SINE Alu -8 302 1 445 133 22 11 chr3 88311811 88311901 -129725257 + L1MA5 LINE L1 6210 6300 0 318 333 31 22 chr3 88312229 88312454 -129724704 + L1MC/D LINE L1 5359 5585 -2223 256 309 147 0 chr3 88312517 88312653 -129724505 - MIR SINE MIR -80 182 27 1205 135 42 54 chr3 88313159 88313419 -129723739 - L1MA5 LINE L1 -3 6297 6041 466 320 80 60 chr3 88313753 88313945 -129723213 - L1M4 LINE L1 -2156 3990 3803 2134 120 10 0 chr3 88313945 88314253 -129722905 - AluSq SINE Alu 0 313 3 466 320 80 60 chr3 88314253 88314886 -129722272 - L1M4 LINE L1 -2343 3803 3149 6834 141 33 15 chr3 88316817 88316903 -129720255 + Tigger3b DNA MER2_type 1 84 -2944 2081 136 0 0 chr3 88316903 88317198 -129719960 + AluSx SINE Alu 3 297 -15 6834 141 33 15 chr3 88317198 88318320 -129718838 + Tigger3b DNA MER2_type 84 1231 0 1674 187 59 82 chr3 88320084 88320561 -129716597 - MLT1C LTR MaLR 0 467 2 360 297 68 12 chr3 88320966 88321145 -129716013 + MIR SINE MIR 3 187 -62 496 285 82 5 chr3 88322322 88322529 -129714629 + L2 LINE L2 1706 1928 -1386 230 287 53 11 chr3 88322536 88322630 -129714528 + L2 LINE L2 2716 2813 -501 339 314 144 45 chr3 88322632 88322944 -129714214 + L2 LINE L2 2971 3313 0 21 0 0 0 chr3 88323073 88323094 -129714064 + AT_rich Low_complexity Low_complexity 1 21 0 372 306 48 52 chr3 88324104 88324235 -129712923 - L2 LINE L2 -4 3309 3179 2073 144 39 31 chr3 88324235 88324595 -129712563 - THE1B LTR MaLR -1 363 1 372 306 48 52 chr3 88324595 88324773 -129712385 - L2 LINE L2 -134 3179 3001 387 311 0 0 chr3 88325196 88325357 -129711801 + (TA)n Simple_repeat Simple_repeat 2 162 0 536 284 30 41 chr3 88326368 88326565 -129710593 + L2 LINE L2 3119 3313 0 450 0 0 0 chr3 88326720 88326770 -129710388 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 893 218 102 41 chr3 88326771 88327037 -129710121 - MER2 DNA MER2_type -4 341 60 639 273 91 0 chr3 88330548 88330713 -129706445 - MER5A DNA MER1_type -2 187 8 2065 69 20 101 chr3 88331241 88331587 -129705571 - AluYb8 SINE Alu 0 318 1 228 35 0 0 chr3 88331696 88331725 -129705433 + (CA)n Simple_repeat Simple_repeat 2 30 0 195 330 160 0 chr3 88332710 88332816 -129704342 - L2 LINE L2 0 3313 3191 21 0 0 0 chr3 88333213 88333234 -129703924 + AT_rich Low_complexity Low_complexity 1 21 0 561 15 0 0 chr3 88333561 88333627 -129703531 + (TCCA)n Simple_repeat Simple_repeat 1 66 0 1490 192 8 4 chr3 88334096 88334357 -129702801 - AluJo SINE Alu -39 273 12 400 289 122 0 chr3 88334405 88334561 -129702597 + L2 LINE L2 3113 3287 -26 732 256 154 67 chr3 88334561 88334642 -129702516 + MLT1G LTR MaLR 6 78 -512 2752 149 60 19 chr3 88334642 88335180 -129701978 + L1MA9 LINE L1 5747 6306 -6 732 256 154 67 chr3 88335180 88335625 -129701533 + MLT1G LTR MaLR 78 553 -37 1732 171 0 26 chr3 88335625 88335930 -129701228 + AluJo SINE Alu 1 297 -15 732 256 154 67 chr3 88335930 88335972 -129701186 + MLT1G LTR MaLR 553 590 0 340 351 42 24 chr3 88336178 88336343 -129700815 - L2 LINE L2 -194 3078 2911 4356 172 6 11 chr3 88337113 88337951 -129699207 + L1PA16 LINE L1 5353 6186 0 337 301 53 8 chr3 88338248 88338381 -129698777 - MIR SINE MIR -117 145 7 456 217 25 8 chr3 88339230 88339350 -129697808 - MER94 DNA DNA -12 122 1 189 307 67 27 chr3 88339404 88339479 -129697679 + L2 LINE L2 3153 3230 -42 2559 31 0 0 chr3 88340302 88340593 -129696565 + AluY SINE Alu 1 291 -20 26 0 0 0 chr3 88340593 88340619 -129696539 + AT_rich Low_complexity Low_complexity 1 26 0 806 254 27 15 chr3 88340619 88340879 -129696279 - L1ME1 LINE L1 -8 6158 5896 881 336 67 47 chr3 88341772 88342276 -129694882 + L2 LINE L2 2174 2667 -605 1946 146 0 0 chr3 88342276 88342582 -129694576 - AluSx SINE Alu 0 306 1 881 336 67 47 chr3 88342582 88342806 -129694352 + L2 LINE L2 2667 2885 -387 1624 198 96 0 chr3 88342806 88343139 -129694019 + MLT1A1 LTR MaLR 1 365 0 881 336 67 47 chr3 88343139 88343455 -129693703 + L2 LINE L2 2885 3247 -25 2278 81 0 10 chr3 88343757 88344053 -129693105 - AluY SINE Alu -18 293 1 2152 107 3 7 chr3 88344119 88344410 -129692748 - AluSp SINE Alu -23 290 1 752 300 64 56 chr3 88345206 88345409 -129691749 + MLT1J LTR MaLR 36 236 -275 219 103 0 0 chr3 88345409 88345448 -129691710 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 3572 17 0 0 chr3 88345448 88345856 -129691302 - L1PA2 LINE L1 -11 6144 5737 752 300 64 56 chr3 88345856 88346024 -129691134 + MLT1J LTR MaLR 235 411 -100 245 311 44 11 chr3 88346176 88346266 -129690892 - MIR SINE MIR -85 177 85 201 288 252 27 chr3 88347194 88347305 -129689853 + MIR SINE MIR 5 140 -122 1304 183 39 150 chr3 88347336 88347904 -129689254 - MLT1D LTR MaLR 0 505 1 30 27 0 0 chr3 88347946 88347983 -129689175 + AT_rich Low_complexity Low_complexity 1 37 0 761 267 72 21 chr3 88347993 88348229 -129688929 - MIR SINE MIR 0 262 15 320 279 29 39 chr3 88349167 88349271 -129687887 + L2 LINE L2 3156 3258 -14 844 199 35 66 chr3 88350127 88350353 -129686805 - MER20 DNA MER1_type 0 219 1 376 262 123 71 chr3 88351535 88351787 -129685371 + MLT1L LTR MaLR 5 269 -346 1605 185 23 10 chr3 88453652 88454036 -129583122 - L1 LINE L1 -1439 4707 4319 902 247 32 12 chr3 88454240 88454491 -129582667 + MIR SINE MIR 6 261 -1 255 298 158 12 chr3 88454578 88454749 -129582409 - MIR SINE MIR -6 256 61 201 302 156 47 chr3 88454795 88454987 -129582171 + MIR SINE MIR 49 261 -1 220 272 11 109 chr3 88455111 88455203 -129581955 + L2 LINE L2 3231 3313 0 360 307 73 21 chr3 88455521 88455713 -129581445 - MIR SINE MIR -7 255 54 891 256 83 33 chr3 88455824 88455982 -129581176 + L1M4 LINE L1 4160 4309 -1837 2392 84 0 7 chr3 88455982 88456290 -129580868 - AluY SINE Alu -5 306 1 891 256 83 33 chr3 88456290 88456591 -129580567 + L1M4 LINE L1 4309 4642 -1504 567 215 96 62 chr3 88456742 88456908 -129580250 + L1M4 LINE L1 4692 4868 -1278 1609 174 89 0 chr3 88456908 88457189 -129579969 - AluSx SINE Alu -6 306 1 567 215 96 62 chr3 88457189 88457231 -129579927 + L1M4 LINE L1 4868 4907 -1239 923 192 37 33 chr3 88457810 88458055 -129579103 - L1MB8 LINE L1 -11 6167 5922 1416 165 20 0 chr3 88458055 88458309 -129578849 - MER7A DNA MER2_type 0 337 79 2096 171 56 0 chr3 88458310 88458703 -129578455 - MSTA LTR MaLR 0 428 14 454 202 48 0 chr3 88458729 88458813 -129578345 - MER7A DNA MER2_type -260 86 1 1615 147 30 85 chr3 88458813 88459214 -129577944 - L1MB8 LINE L1 -255 5923 5545 909 168 99 40 chr3 88459375 88459449 -129577709 + MER20 DNA MER1_type 1 69 -150 369 62 0 0 chr3 88459449 88459497 -129577661 + (TG)n Simple_repeat Simple_repeat 2 49 0 909 168 99 40 chr3 88459497 88459624 -129577534 + MER20 DNA MER1_type 69 214 -5 186 271 0 0 chr3 88460305 88460353 -129576805 - MIR3 SINE MIR -28 180 133 330 316 53 7 chr3 88460430 88460582 -129576576 + MIR SINE MIR 9 167 -95 354 324 9 36 chr3 88460644 88460755 -129576403 - L2 LINE L2 0 3313 3206 193 329 89 41 chr3 88460769 88460915 -129576243 - MIR3 SINE MIR -54 154 2 1063 139 8 75 chr3 88460999 88461265 -129575893 - L1MC3 LINE L1 -11 7774 7527 * 1583 236 53 69 chr3 88461259 88461815 -129575343 - L1M4 LINE L1 -744 5402 4859 1798 142 89 0 chr3 88461815 88462096 -129575062 + AluSx SINE Alu 1 306 -6 1583 236 53 69 chr3 88462096 88462262 -129574896 - L1M4 LINE L1 -1287 4859 4692 2798 82 3 0 chr3 88462644 88462998 -129574160 - THE1A LTR MaLR 0 355 1 11918 87 5 2 chr3 88462999 88464573 -129572585 - THE1A-int LTR MaLR -1 1579 1 2578 111 6 0 chr3 88464573 88464926 -129572232 - THE1A LTR MaLR 0 355 1 390 324 27 0 chr3 88464943 88465054 -129572104 + MIR SINE MIR 36 149 -113 818 80 0 0 chr3 88465056 88465156 -129572002 + AluS SINE Alu 1 100 -212 385 241 186 16 chr3 88465272 88465545 -129571613 - L2 LINE L2 -193 3120 2803 232 244 37 24 chr3 88465758 88465840 -129571318 + MIR SINE MIR 34 116 -92 216 162 0 0 chr3 88466113 88466150 -129571008 + (CAATT)n Simple_repeat Simple_repeat 3 39 0 1178 204 5 0 chr3 88466278 88466498 -129570660 - MER58A DNA MER1_type -3 221 1 398 262 48 79 chr3 88466533 88466782 -129570376 - MIR SINE MIR -11 251 3 880 301 117 22 chr3 88467205 88467650 -129569508 + L2 LINE L2 2827 3313 0 534 305 56 39 chr3 88467666 88467899 -129569259 - MIR SINE MIR -6 256 20 249 135 19 19 chr3 88468981 88469033 -129568125 - THE1-int LTR MaLR -1522 58 7 276 268 0 0 chr3 88469307 88469389 -129567769 + (TATATG)n Simple_repeat Simple_repeat 6 87 0 323 271 47 0 chr3 88469390 88469475 -129567683 + L1MC4 LINE L1 6615 6703 -1339 778 188 0 0 chr3 88469583 88469711 -129567447 + FLAM_C SINE Alu 1 128 -5 289 272 40 56 chr3 88470190 88470315 -129566843 - MIR SINE MIR -61 201 79 318 386 47 21 chr3 88472044 88472280 -129564878 + L2 LINE L2 2854 3095 -177 1392 182 59 102 chr3 88472440 88472831 -129564327 + MLT1A2 LTR MaLR 1 374 0 257 279 75 58 chr3 88473063 88473289 -129563869 + L1ME4a LINE L1 5866 6095 -26 512 263 77 38 chr3 88474415 88474624 -129562534 - MIR SINE MIR 0 262 46 23 33 0 0 chr3 88474912 88474942 -129562216 + AT_rich Low_complexity Low_complexity 1 30 0 3399 138 21 67 chr3 88476934 88477651 -129559507 - L1MA8 LINE L1 -3 6288 5605 1470 167 29 22 chr3 88477942 88478253 -129558905 + MER58B DNA MER1_type 29 341 0 560 169 25 5 chr3 88478579 88478774 -129558384 + AluJ SINE Alu 14 309 -3 2715 175 74 3 chr3 88479581 88480232 -129556926 + Charlie5 DNA MER1_type 1449 2145 -467 251 182 260 0 chr3 88480226 88480303 -129556855 + Charlie5 DNA MER1_type 2286 2382 -230 * 1093 175 24 0 chr3 88480358 88480604 -129556554 + Charlie5 DNA MER1_type 2333 2584 -28 21 0 0 0 chr3 88481160 88481181 -129555977 + AT_rich Low_complexity Low_complexity 1 21 0 189 207 52 52 chr3 88481569 88481627 -129555531 - MIR SINE MIR -66 142 85 242 303 114 92 chr3 88483198 88483426 -129553732 + L2 LINE L2 2512 2744 -570 2285 117 7 0 chr3 88483431 88483739 -129553419 + AluSq SINE Alu 1 310 -3 694 198 0 0 chr3 88483803 88483929 -129553229 - MER45A DNA AcHobo 0 178 53 4858 237 68 21 chr3 88484120 88485893 -129551265 - L1M4 LINE L1 -1943 4203 2348 335 293 125 53 chr3 88485897 88486218 -129550940 - LTR16C LTR ERVL -59 432 89 1476 152 69 92 chr3 88486584 88486933 -129550225 - MLT2B3 LTR ERVL -211 343 3 1126 270 116 37 chr3 88488185 88488670 -129548488 - MLT1G1 LTR MaLR 0 595 73 904 178 76 20 chr3 88488789 88488986 -129548172 + MER3 DNA MER1_type 1 208 -1 234 217 225 70 chr3 88490451 88490580 -129546578 - MIR SINE MIR -36 226 78 565 298 43 15 chr3 88490781 88491025 -129546133 - MIR SINE MIR -11 251 2 356 278 0 9 chr3 88491372 88491480 -129545678 + MLT1K LTR MaLR 2 108 -480 572 252 26 0 chr3 88491490 88491645 -129545513 + MLT1K LTR MaLR 422 580 -8 1893 78 4 4 chr3 88492200 88492444 -129544714 + AluSp SINE Alu 62 305 -8 1561 283 85 53 chr3 88492547 88493069 -129544089 + L2 LINE L2 2209 2713 -600 1741 174 61 127 chr3 88493069 88493662 -129543496 + MLT2B3 LTR ERVL 1 554 0 1561 283 85 53 chr3 88493662 88494204 -129542954 + L2 LINE L2 2713 3313 0 409 297 91 47 chr3 88494334 88494586 -129542572 - MIR SINE MIR -3 259 6 1038 124 154 10 chr3 88495003 88495204 -129541954 + MER30 DNA MER1_type 1 230 0 274 213 33 0 chr3 88495514 88495575 -129541583 + MER91B DNA MER1_type 1 63 -127 205 330 23 0 chr3 88495638 88495726 -129541432 + MIR SINE MIR 117 206 -56 255 61 0 0 chr3 88495972 88496005 -129541153 + (TAAAA)n Simple_repeat Simple_repeat 5 37 0 791 217 75 38 chr3 88497167 88497407 -129539751 + MIR SINE MIR 2 250 -12 1799 149 0 41 chr3 88497481 88497796 -129539362 + AluJo SINE Alu 1 302 -10 959 204 6 0 chr3 88497905 88498081 -129539077 + MER58B DNA MER1_type 164 340 -1 1809 130 68 7 chr3 88498952 88499244 -129537914 + AluSq SINE Alu 1 310 -3 1354 194 15 0 chr3 88499261 88499529 -129537629 - MER58B DNA MER1_type -28 313 42 272 303 0 45 chr3 88499881 88499970 -129537188 + L2 LINE L2 3229 3313 0 347 284 198 0 chr3 88500123 88500197 -129536961 + L2 LINE L2 3134 3192 -80 996 205 52 5 chr3 88500197 88500407 -129536751 - MER58A DNA MER1_type -3 221 2 347 284 198 0 chr3 88500407 88500448 -129536710 + L2 LINE L2 3192 3272 0 219 301 97 11 chr3 88500686 88500779 -129536379 + MIR SINE MIR 149 249 -13 368 226 90 8 chr3 88502222 88502355 -129534803 - Charlie8 DNA MER1_type -1926 491 348 240 264 0 0 chr3 88502554 88502607 -129534551 + MIR SINE MIR 210 262 0 1755 193 54 24 chr3 88502920 88503330 -129533828 - MER63B DNA MER1_type 0 436 15 200 299 78 39 chr3 88503455 88503532 -129533626 + L2 LINE L2 3150 3229 -43 856 174 112 23 chr3 88504752 88505057 -129532101 + Charlie5 DNA MER1_type 755 1086 -1526 1154 55 6 24 chr3 88505159 88505323 -129531835 - AluY SINE Alu -146 165 5 467 311 76 13 chr3 88505720 88505945 -129531213 - MIR SINE MIR -9 253 15 309 338 0 39 chr3 88506795 88506949 -129530209 - L2 LINE L2 -16 3297 3150 225 275 94 31 chr3 88506972 88507132 -129530026 - L2 LINE L2 -338 2975 2806 206 93 0 23 chr3 88507146 88507189 -129529969 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 2846 94 0 39 chr3 88507189 88507525 -129529633 - L1PA10 LINE L1 -20 6148 5833 2279 94 0 0 chr3 88507525 88507822 -129529336 - AluY SINE Alu -14 297 1 2846 94 0 39 chr3 88507822 88507942 -129529216 - L1PA10 LINE L1 -335 5833 5710 485 327 74 5 chr3 88507943 88508145 -129529013 - L2 LINE L2 -535 2779 2564 230 308 89 32 chr3 88508297 88508544 -129528614 + L1ME LINE L1 5655 5915 -206 21 0 0 0 chr3 88508701 88508722 -129528436 + AT_rich Low_complexity Low_complexity 1 21 0 352 276 0 37 chr3 88508933 88508988 -129528170 + MER94 DNA DNA 1 57 -77 2244 135 0 0 chr3 88508988 88509300 -129527858 + AluSx SINE Alu 1 312 0 352 276 0 37 chr3 88509300 88509378 -129527780 + MER94 DNA DNA 57 129 -5 202 359 66 47 chr3 88509570 88509676 -129527482 + L2 LINE L2 3149 3256 -16 34 42 0 0 chr3 88510419 88510467 -129526691 + AT_rich Low_complexity Low_complexity 1 48 0 265 295 32 11 chr3 88511764 88511859 -129525299 - MER5A DNA MER1_type -66 123 27 199 238 0 0 chr3 88511892 88511934 -129525224 + MER5A DNA MER1_type 9 50 -139 301 298 123 0 chr3 88512694 88512808 -129524350 + L2 LINE L2 3181 3308 -5 294 310 82 44 chr3 88513046 88513204 -129523954 + MIR SINE MIR 21 184 -78 513 233 199 14 chr3 88513251 88513397 -129523761 + MER5A DNA MER1_type 16 188 -1 307 301 208 33 chr3 88514033 88514216 -129522942 - MIR SINE MIR -1 261 47 533 333 5 5 chr3 88514838 88515024 -129522134 - MIR SINE MIR -64 198 13 341 351 15 8 chr3 88515692 88515826 -129521332 + MIR SINE MIR 2 136 -126 943 149 117 5 chr3 88515892 88516080 -129521078 - MER2 DNA MER2_type -136 209 1 467 225 152 7 chr3 88516080 88516218 -129520940 + MIR SINE MIR 101 258 -4 486 222 67 44 chr3 88516235 88516370 -129520788 + MIR SINE MIR 13 150 -112 3510 196 24 0 chr3 88516376 88517096 -129520062 + L1MB3 LINE L1 5446 6182 -1 348 24 0 0 chr3 88517154 88517195 -129519963 + (ATG)n Simple_repeat Simple_repeat 2 42 0 223 275 77 66 chr3 88517915 88518006 -129519152 + L2 LINE L2 3181 3272 0 237 284 8 94 chr3 88518224 88518351 -129518807 + L2 LINE L2 3140 3255 -58 282 320 54 20 chr3 88518710 88518857 -129518301 - L2 LINE L2 0 3313 3162 1073 170 63 0 chr3 88519225 88519448 -129517710 - L1MD3 LINE L1 0 7995 7759 1711 171 7 4 chr3 88519568 88519848 -129517310 - AluJo SINE Alu -31 281 1 1980 131 17 34 chr3 88520221 88520382 -129516776 + MER2 DNA MER2_type 1 163 -182 1755 153 67 37 chr3 88520382 88520709 -129516449 + MER1B DNA MER1_type 1 337 0 1980 131 17 34 chr3 88520709 88520897 -129516261 + MER2 DNA MER2_type 163 344 -1 348 24 0 0 chr3 88521000 88521041 -129516117 + (CA)n Simple_repeat Simple_repeat 2 42 0 577 292 99 21 chr3 88521261 88521504 -129515654 + MIR SINE MIR 1 262 0 1786 181 87 52 chr3 88521703 88522188 -129514970 - MLT1D LTR MaLR -2 503 2 243 260 14 0 chr3 88522335 88522408 -129514750 - LTR33 LTR ERVL 0 521 448 243 0 0 0 chr3 88522434 88522461 -129514697 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 577 212 22 62 chr3 88522520 88522604 -129514554 - LTR33 LTR ERVL -349 172 97 935 176 21 16 chr3 88522604 88522791 -129514367 - MER5A DNA MER1_type -1 188 1 577 212 22 62 chr3 88522791 88522885 -129514273 - LTR33 LTR ERVL -424 97 1 198 361 12 0 chr3 88523406 88523489 -129513669 + MIR SINE MIR 32 115 -147 2200 118 7 0 chr3 88523728 88524034 -129513124 + AluSc SINE Alu 1 308 -1 21 0 0 0 chr3 88524044 88524065 -129513093 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr3 88524121 88524149 -129513009 + AT_rich Low_complexity Low_complexity 1 28 0 453 316 86 34 chr3 88524853 88525087 -129512071 - MIR SINE MIR -2 260 15 1871 216 53 31 chr3 88525215 88525702 -129511456 - MLT1F LTR MaLR -1 541 44 1964 167 3 0 chr3 88525789 88526100 -129511058 - AluJb SINE Alu 0 312 1 247 300 11 44 chr3 88526245 88526335 -129510823 + L2 LINE L2 3186 3272 0 486 228 81 0 chr3 88526408 88526544 -129510614 + Charlie8 DNA MER1_type 27 173 -2244 2288 111 3 13 chr3 88527091 88527407 -129509751 + AluSq SINE Alu 1 313 0 603 267 105 36 chr3 88527774 88528107 -129509051 - MLT1J LTR MaLR 0 511 156 425 211 184 0 chr3 88528290 88528399 -129508759 - MIR SINE MIR -77 185 57 1935 176 18 9 chr3 88529276 88529617 -129507541 - MER2 DNA MER2_type 0 344 1 188 259 134 36 chr3 88529618 88529730 -129507428 + L2 LINE L2 3190 3312 -1 198 374 109 17 chr3 88529915 88530153 -129507005 + L2 LINE L2 1933 2192 -1122 1001 220 62 7 chr3 88530533 88530806 -129506352 - L1MD3 LINE L1 -16 7979 7692 816 236 44 8 chr3 88530805 88531055 -129506103 - L1MC4a LINE L1 -501 7307 7049 * 627 285 72 21 chr3 88531110 88531345 -129505813 - MIR SINE MIR -14 248 2 1516 264 51 28 chr3 88531788 88532564 -129504594 + L2 LINE L2 2508 3311 -2 590 321 19 14 chr3 88532718 88532930 -129504228 + MLT1K LTR MaLR 5 217 -371 495 227 34 17 chr3 88533055 88533174 -129503984 + MLT1K LTR MaLR 393 513 -75 1795 78 0 0 chr3 88533488 88533706 -129503452 + AluY SINE Alu 24 241 -70 1254 291 281 20 chr3 88533781 88534729 -129502429 + L2 LINE L2 703 1897 -1417 1569 120 107 41 chr3 88534729 88535046 -129502112 + THE1A LTR MaLR 1 338 -17 617 73 0 0 chr3 88535146 88535228 -129501930 - THE1C LTR MaLR -293 82 1 1333 271 30 5 chr3 88535228 88535600 -129501558 + L2 LINE L2 2911 3291 -22 279 302 54 78 chr3 88535618 88535724 -129501434 - L2 LINE L2 -13 3259 3155 574 312 16 0 chr3 88535724 88535910 -129501248 + MER5A DNA MER1_type 1 189 0 279 302 54 78 chr3 88535910 88535932 -129501226 - L2 LINE L2 -117 3155 3134 315 161 0 0 chr3 88536754 88536810 -129500348 + GA-rich Low_complexity Low_complexity 1 56 0 283 302 0 10 chr3 88537521 88537617 -129499541 + GA-rich Low_complexity Low_complexity 1 95 0 942 271 14 0 chr3 88538436 88538657 -129498501 + MIR SINE MIR 39 262 0 352 357 85 73 chr3 88538729 88539057 -129498101 + L2 LINE L2 2930 3261 -11 306 315 38 43 chr3 88539874 88540021 -129497137 + MIR SINE MIR 65 212 -50 2047 138 18 38 chr3 88540021 88540362 -129496796 + MER1B DNA MER1_type 1 334 -3 306 315 38 43 chr3 88540362 88540398 -129496760 + MIR SINE MIR 212 247 -15 324 246 62 108 chr3 88540470 88540758 -129496400 + L1MEd LINE L1 550 824 -5295 496 201 86 29 chr3 88541151 88541290 -129495868 - MLT1L LTR MaLR -32 583 437 240 284 34 23 chr3 88542157 88542245 -129494913 - MER5A DNA MER1_type -47 142 54 567 249 124 0 chr3 88543573 88543742 -129493416 - MIR SINE MIR -6 256 67 356 82 0 0 chr3 88544065 88544114 -129493044 - Alu SINE Alu -9 291 243 8171 189 52 38 chr3 88544216 88547599 -129489559 - L1 LINE L1 -1917 5291 1864 714 236 120 46 chr3 88547651 88548125 -129489033 - L1 LINE L1 -6109 1100 442 269 227 30 25 chr3 88548125 88548293 -129488865 - L1M LINE L1 -769 5377 5219 340 297 0 0 chr3 88548753 88548864 -129488294 - L1MC4a LINE L1 -1972 5836 5726 405 256 0 34 chr3 88548985 88549102 -129488056 + MER69A DNA AcHobo 1 113 -64 459 290 20 20 chr3 88551215 88551463 -129485695 - L1MEc LINE L1 -4853 1543 1296 1454 222 62 10 chr3 88551991 88552601 -129484557 + L1ME LINE L1 5127 5771 -393 2225 97 4 0 chr3 88552633 88552935 -129484223 + AluSg SINE Alu 1 303 0 601 345 14 5 chr3 88554329 88554549 -129482609 + MIR SINE MIR 29 250 -12 266 277 135 61 chr3 88555131 88555427 -129481731 + L2 LINE L2 2995 3312 -1 251 216 102 0 chr3 88556240 88556328 -129480830 - L1MC4a LINE L1 -525 5596 5500 255 240 70 23 chr3 88556331 88556460 -129480698 + L1ME LINE L1 5665 5799 -367 507 285 41 14 chr3 88556517 88556738 -129480420 - L1ME LINE L1 -560 5604 5378 325 189 32 21 chr3 88556740 88556835 -129480323 - L1ME LINE L1 -814 5332 5237 201 74 0 0 chr3 88556857 88556884 -129480274 + (CA)n Simple_repeat Simple_repeat 2 28 0 256 235 26 35 chr3 88557052 88557167 -129479991 - L1ME LINE L1 -904 5242 5129 643 305 61 7 chr3 88557262 88557669 -129479489 + L1MEc LINE L1 1331 1759 -4637 406 349 49 15 chr3 88557725 88557989 -129479169 + L1MEc LINE L1 1851 2123 -4273 614 287 147 0 chr3 88558350 88558622 -129478536 - MLT1I LTR MaLR 0 409 98 1923 130 60 41 chr3 88558681 88559049 -129478109 - THE1C LTR MaLR 0 375 1 8380 133 15 56 chr3 88559049 88560617 -129476541 - THE1C-int LTR MaLR 0 1580 78 1841 140 156 0 chr3 88561429 88561744 -129475414 + THE1B LTR MaLR 1 364 0 1106 263 49 52 chr3 88561874 88562460 -129474698 + L2 LINE L2 2481 3067 -246 395 302 0 0 chr3 88562543 88562649 -129474509 + MER94 DNA DNA 27 132 -2 491 240 23 104 chr3 88562660 88562881 -129474277 + L2 LINE L2 3111 3313 0 2685 107 0 3 chr3 88563146 88563511 -129473647 - THE1B LTR MaLR 0 364 1 232 376 65 0 chr3 88563767 88563860 -129473298 + L2 LINE L2 3185 3283 -30 1418 18 0 18 chr3 88565817 88565986 -129471172 + L1PA3 LINE L1 5989 6154 -1 463 275 42 80 chr3 88566273 88566535 -129470623 - MLT1J LTR MaLR -44 467 216 503 353 33 5 chr3 88567782 88567966 -129469192 + MIR SINE MIR 4 192 -70 2335 158 71 9 chr3 88568022 88568459 -129468699 - MLT2C2 LTR ERVL 0 464 1 287 116 0 0 chr3 88570690 88570733 -129466425 + MLT1A1 LTR MaLR 121 163 -202 22 0 0 0 chr3 88570766 88570788 -129466370 + AT_rich Low_complexity Low_complexity 1 22 0 378 344 15 0 chr3 88570881 88571012 -129466146 - MIR SINE MIR -52 210 78 1227 219 31 16 chr3 88571160 88571478 -129465680 + MLT1A1 LTR MaLR 10 441 -26 258 333 93 0 chr3 88571503 88571611 -129465547 - MIR SINE MIR -99 163 46 948 240 115 40 chr3 88571789 88572110 -129465048 + MLT1I LTR MaLR 7 361 -48 1871 122 47 70 chr3 88572110 88572494 -129464664 - THE1C LTR MaLR 0 375 1 948 240 115 40 chr3 88572494 88572547 -129464611 + MLT1I LTR MaLR 361 409 0 244 240 107 0 chr3 88572732 88572807 -129464351 - Charlie8 DNA MER1_type -2236 181 99 249 289 96 0 chr3 88572940 88573023 -129464135 + MIR SINE MIR 55 145 -63 908 151 15 34 chr3 88574202 88574407 -129462751 + L1MA6 LINE L1 6099 6299 -1 388 345 40 28 chr3 88574565 88574742 -129462416 + MER5A DNA MER1_type 1 179 -10 643 287 14 14 chr3 88574753 88574962 -129462196 - MLT1K LTR MaLR -7 581 373 517 298 43 43 chr3 88574997 88575205 -129461953 - MIR SINE MIR -40 222 15 2334 103 0 0 chr3 88575773 88576073 -129461085 + AluSx SINE Alu 3 302 -10 253 299 37 37 chr3 88576296 88576403 -129460755 + MLT1A1 LTR MaLR 236 342 -248 274 211 44 11 chr3 88576474 88576564 -129460594 + MLT1G LTR MaLR 498 590 0 590 311 38 9 chr3 88576937 88577149 -129460009 - MIR SINE MIR -35 227 10 442 330 91 5 chr3 88580007 88580209 -129456949 + MIR SINE MIR 19 228 -34 199 299 182 0 chr3 88580436 88580513 -129456645 - MIR SINE MIR 0 262 172 252 182 0 0 chr3 88580639 88580683 -129456475 - L3 LINE CR1 -887 690 647 359 68 17 0 chr3 88581121 88581180 -129455978 + (TC)n Simple_repeat Simple_repeat 2 61 0 315 0 0 0 chr3 88581182 88581217 -129455941 + (CA)n Simple_repeat Simple_repeat 1 35 0 2739 231 52 16 chr3 88581431 88582223 -129454935 + MER99 DNA DNA 5 824 -4 703 184 178 0 chr3 88582679 88582719 -129454439 - MLT2B1 LTR ERVL 0 520 488 514 60 24 0 chr3 88582719 88582802 -129454356 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 703 184 178 0 chr3 88582802 88582935 -129454223 - MLT2B1 LTR ERVL -32 488 316 7561 139 48 8 chr3 88582942 88584305 -129452853 - Ricksha DNA DNA -8 3238 1821 1385 158 118 0 chr3 88584303 88584557 -129452601 - Ricksha DNA DNA -966 288 5 * 1291 215 44 19 chr3 88584557 88584878 -129452280 - MLT2B1 LTR ERVL -191 329 1 2262 74 20 3 chr3 88585255 88585552 -129451606 + AluY SINE Alu 1 302 -9 340 288 54 90 chr3 88585672 88586152 -129451006 - MLT1J LTR MaLR -44 467 5 318 26 0 0 chr3 88586214 88586253 -129450905 + (CA)n Simple_repeat Simple_repeat 1 39 0 23 0 0 0 chr3 88586515 88586538 -129450620 + AT_rich Low_complexity Low_complexity 1 23 0 227 256 24 37 chr3 88587532 88587614 -129449544 + L2 LINE L2 3026 3106 -207 1647 184 4 7 chr3 88587659 88587937 -129449221 - AluJo SINE Alu -25 287 11 599 261 43 39 chr3 88587952 88588159 -129448999 + L2 LINE L2 3101 3308 -5 207 352 77 0 chr3 88588160 88588251 -129448907 + MIR SINE MIR 165 262 0 253 260 213 39 chr3 88588990 88589117 -129448041 - MIR3 SINE MIR -25 183 35 2239 16 0 0 chr3 88590342 88590592 -129446566 + AluYb8 SINE Alu 37 286 -32 2461 25 0 0 chr3 88590940 88591220 -129445938 + AluYb8 SINE Alu 37 316 -2 599 266 197 0 chr3 88593044 88593262 -129443896 + MIR SINE MIR 2 262 0 183 318 183 8 chr3 88593736 88593862 -129443296 + L2 LINE L2 2607 2754 -560 517 281 38 6 chr3 88593977 88594137 -129443021 - MIR SINE MIR -13 249 85 466 254 27 0 chr3 88594422 88594532 -129442626 - MIR SINE MIR -70 192 80 4199 78 9 0 chr3 88595337 88595886 -129441272 - MER41A LTR ERV1 0 554 1 299 230 30 0 chr3 88596415 88596515 -129440643 + L1MC5 LINE L1 7808 7910 -51 275 339 101 41 chr3 88596725 88596943 -129440215 + MIR SINE MIR 19 249 -13 416 342 71 58 chr3 88597945 88598507 -129438651 - L2 LINE L2 -11 3302 2726 276 30 0 0 chr3 88598695 88598728 -129438430 + (CA)n Simple_repeat Simple_repeat 1 33 0 341 322 185 5 chr3 88599333 88599538 -129437620 - MIR SINE MIR -1 261 20 331 328 57 0 chr3 88599572 88599694 -129437464 + MER5A DNA MER1_type 7 135 -54 2313 83 7 13 chr3 88599749 88600051 -129437107 - AluY SINE Alu -11 300 1 351 330 199 14 chr3 88602645 88602991 -129434167 + L3 LINE CR1 690 1099 -478 342 341 16 0 chr3 88603007 88603133 -129434025 - MIR SINE MIR -24 238 111 295 355 19 9 chr3 88603542 88603649 -129433509 - MIR SINE MIR -147 115 8 1013 310 140 11 chr3 88603860 88604380 -129432778 - L2 LINE L2 0 3313 2862 7193 112 47 61 chr3 88604380 88604984 -129432174 + Tigger3b DNA MER2_type 1 612 -2416 2099 119 3 0 chr3 88604984 88605269 -129431889 + AluSq SINE Alu 6 291 -22 7193 112 47 61 chr3 88605269 88605912 -129431246 + Tigger3b DNA MER2_type 612 1230 -1 1013 310 140 11 chr3 88605912 88606207 -129430951 - L2 LINE L2 -451 2862 2407 182 336 90 35 chr3 88606204 88606311 -129430847 + L3 LINE CR1 1298 1398 -179 * 527 127 13 0 chr3 88606311 88606390 -129430768 - MADE1 DNA Mariner 0 80 1 182 336 90 35 chr3 88606390 88606538 -129430620 + L3 LINE CR1 1398 1567 -10 448 304 29 22 chr3 88608367 88608505 -129428653 - L2 LINE L2 -2 3270 3132 1973 150 3 3 chr3 88610157 88610457 -129426701 + AluSx SINE Alu 1 300 -12 272 229 0 16 chr3 88610518 88610579 -129426579 - MER113 DNA MER1_type? 0 521 462 972 224 29 37 chr3 88610639 88610884 -129426274 - MIR SINE MIR 0 262 20 583 268 96 64 chr3 88611026 88611213 -129425945 - MIR SINE MIR -4 258 60 2117 117 0 0 chr3 88611213 88611487 -129425671 - AluSx SINE Alu -17 295 22 583 268 96 64 chr3 88611487 88611549 -129425609 - MIR SINE MIR -202 60 1 288 203 76 25 chr3 88611564 88611643 -129425515 - MIR SINE MIR -92 170 88 1138 248 25 0 chr3 88611644 88611918 -129425240 - MER58B DNA MER1_type -1 340 60 791 296 45 64 chr3 88612601 88613067 -129424091 + LTR16C LTR ERVL 35 491 0 447 263 0 0 chr3 88613201 88613296 -129423862 - MIR SINE MIR -108 154 60 586 313 149 3 chr3 88613450 88613766 -129423392 - L2 LINE L2 -4 3309 2948 312 298 41 31 chr3 88614132 88614289 -129422869 + MIR3 SINE MIR 2 161 -101 2101 187 8 6 chr3 88614289 88614653 -129422505 - MLT1A1 LTR MaLR 0 365 1 312 298 41 31 chr3 88614653 88614724 -129422434 + MIR3 SINE MIR 161 230 -32 228 250 17 0 chr3 88614762 88614822 -129422336 + (TAG)n Simple_repeat Simple_repeat 1 61 0 1309 200 58 13 chr3 88614995 88615305 -129421853 - MER33 DNA MER1_type 0 324 1 249 163 20 0 chr3 88615605 88615654 -129421504 + L2 LINE L2 2995 3044 -269 299 119 0 0 chr3 88616041 88616083 -129421075 + MIR3 SINE MIR 116 157 -51 27 81 0 0 chr3 88616128 88616190 -129420968 + AT_rich Low_complexity Low_complexity 1 62 0 292 237 21 32 chr3 88616281 88616374 -129420784 + GA-rich Low_complexity Low_complexity 3 94 0 539 230 64 19 chr3 88616386 88616504 -129420654 + MLT1L LTR MaLR 383 521 -69 545 254 57 51 chr3 88616504 88616681 -129420477 - MER5B DNA MER1_type 0 178 1 539 230 64 19 chr3 88616681 88616726 -129420432 + MLT1L LTR MaLR 521 563 -27 259 220 40 0 chr3 88616775 88616825 -129420333 - MER5A DNA MER1_type -77 112 61 225 94 0 0 chr3 88616828 88616860 -129420298 + (T)n Simple_repeat Simple_repeat 1 32 0 269 258 15 0 chr3 88617546 88617612 -129419546 - MER5A DNA MER1_type -114 75 9 308 207 0 0 chr3 88617624 88617682 -129419476 + MLT1L LTR MaLR 558 615 0 1683 172 14 11 chr3 88617758 88618043 -129419115 + AluJo SINE Alu 1 286 -26 352 244 91 36 chr3 88618092 88618313 -129418845 - HAL1b LINE L1 -1027 321 89 3488 75 18 5 chr3 88618671 88619109 -129418049 - MLT2A1 LTR ERVL 0 444 1 666 341 52 42 chr3 88620143 88620519 -129416639 - L2 LINE L2 -626 2688 2304 2987 175 15 38 chr3 88620519 88621046 -129416112 + MLT2B2 LTR ERVL 1 515 0 666 341 52 42 chr3 88621046 88621164 -129415994 - L2 LINE L2 -1010 2304 2189 1351 311 66 19 chr3 88621282 88621809 -129415349 - MLT1K LTR MaLR -15 573 22 347 45 45 15 chr3 88622397 88622464 -129414694 + (TTTTG)n Simple_repeat Simple_repeat 3 71 0 180 0 0 0 chr3 88622683 88622703 -129414455 + (A)n Simple_repeat Simple_repeat 1 20 0 562 278 16 42 chr3 88623052 88623243 -129413915 - MLT1J2 LTR MaLR 0 450 265 784 166 159 12 chr3 88623243 88623406 -129413752 - AluJo SINE Alu -13 299 113 1327 179 79 65 chr3 88623468 88623758 -129413400 - AluJo SINE Alu -6 296 3 249 267 95 60 chr3 88623780 88623896 -129413262 - MLT1J2 LTR MaLR -214 236 117 428 234 78 21 chr3 88624171 88624312 -129412846 + MIR SINE MIR 114 262 0 2296 66 24 0 chr3 88624386 88624675 -129412483 - AluY SINE Alu -15 296 1 517 274 149 33 chr3 88625294 88625509 -129411649 - MIR SINE MIR -3 259 20 620 308 183 15 chr3 88626235 88626560 -129410598 + L2 LINE L2 2565 2945 -369 463 269 64 7 chr3 88626560 88626701 -129410457 + MER5A DNA MER1_type 3 151 -38 234 0 0 0 chr3 88626705 88626731 -129410427 + (T)n Simple_repeat Simple_repeat 1 26 0 232 284 185 37 chr3 88626818 88626980 -129410178 - MLT1J LTR MaLR -43 468 283 879 298 42 24 chr3 88626980 88627229 -129409929 - MLT1J LTR MaLR -198 313 57 2186 126 73 22 chr3 88627229 88627586 -129409572 + THE1C LTR MaLR 1 375 0 879 298 42 24 chr3 88627586 88627625 -129409533 - MLT1J LTR MaLR -454 57 20 575 193 0 0 chr3 88627662 88627750 -129409408 - FLAM_A SINE Alu -23 119 32 346 354 46 8 chr3 88627906 88628036 -129409122 + L2 LINE L2 3138 3272 0 1043 315 80 22 chr3 88628305 88629387 -129407771 + L1M4 LINE L1 2114 3258 -2888 320 255 47 19 chr3 88630035 88630141 -129407017 - LTR67 LTR ERVL 0 557 449 241 258 89 40 chr3 88630436 88630560 -129406598 + LTR67 LTR ERVL 428 557 0 1626 238 21 3 chr3 88631555 88631938 -129405220 + L1ME3A LINE L1 5367 5756 -406 622 236 25 101 chr3 88631948 88632019 -129405139 + L1ME3A LINE L1 5911 5986 -184 2222 74 17 20 chr3 88632019 88632317 -129404841 + AluSg SINE Alu 1 297 -13 622 236 25 101 chr3 88632317 88632521 -129404637 + L1ME3A LINE L1 5986 6165 -5 259 180 66 0 chr3 88632632 88632693 -129404465 + MIR SINE MIR 109 173 -89 228 350 32 16 chr3 88632675 88632798 -129404360 + L2 LINE L2 2919 3043 -229 * 247 239 92 9 chr3 88632854 88632963 -129404195 - LTR67 LTR ERVL -1 556 439 519 242 12 115 chr3 88633058 88633302 -129403856 - LTR67 LTR ERVL -333 224 6 331 350 21 14 chr3 88633327 88633470 -129403688 + L2 LINE L2 3170 3313 0 188 260 100 0 chr3 88633606 88633656 -129403502 + L2 LINE L2 3214 3268 -4 2299 105 7 0 chr3 88634213 88634519 -129402639 + L1PA10 LINE L1 5858 6165 -3 403 200 47 12 chr3 88635614 88635699 -129401459 - L2 LINE L2 -8 3264 3177 1136 141 27 77 chr3 88635704 88635924 -129401234 - MER3 DNA MER1_type 0 209 1 353 319 35 24 chr3 88637614 88637783 -129399375 + MIR SINE MIR 75 245 -17 377 111 0 0 chr3 88637911 88637970 -129399188 - L1 LINE L1 -1987 4159 4101 1254 120 31 5 chr3 88637970 88638162 -129398996 + L1PA15 LINE L1 5686 5882 -283 5307 150 31 16 chr3 88638166 88639418 -129397740 - L1MB1 LINE L1 0 6168 4902 2213 178 34 13 chr3 88640081 88640468 -129396690 + MSTD LTR MaLR 2 396 0 2581 215 105 67 chr3 88640627 88641408 -129395750 + MER21B LTR ERV1 1 811 -52 278 276 13 0 chr3 88641486 88641562 -129395596 - Charlie8 DNA MER1_type -2 2415 2339 868 215 11 26 chr3 88641662 88641853 -129395305 - Charlie8 DNA MER1_type -2152 265 78 613 232 136 15 chr3 88641853 88642051 -129395107 + L1ME3A LINE L1 5948 6169 -1 2488 75 0 3 chr3 88642161 88642469 -129394689 - AluY SINE Alu -2 309 3 329 321 36 21 chr3 88642662 88642802 -129394356 + MIR3 SINE MIR 3 144 -64 1815 159 29 0 chr3 88642848 88643125 -129394033 + AluJo SINE Alu 1 285 -27 1616 143 177 0 chr3 88643150 88643444 -129393714 - THE1C LTR MaLR 0 375 30 515 260 125 5 chr3 88643503 88643666 -129393492 - MER5A DNA MER1_type 0 189 4 309 265 55 138 chr3 88644400 88644653 -129392505 + MIR SINE MIR 20 251 -11 2170 123 155 13 chr3 88644684 88645059 -129392099 - MSTA LTR MaLR 0 428 1 589 281 94 5 chr3 88645357 88645549 -129391609 + MIR SINE MIR 34 242 -20 192 40 0 0 chr3 88645552 88645577 -129391581 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1773 269 173 25 chr3 88646642 88647707 -129389451 + L2 LINE L2 2094 3313 0 247 250 0 0 chr3 88647933 88647993 -129389165 - MLT1K LTR MaLR 0 588 529 481 318 26 7 chr3 88648097 88648251 -129388907 - MLT1K LTR MaLR -132 456 300 862 201 106 0 chr3 88648721 88648910 -129388248 - MLT1F1 LTR MaLR 0 567 359 359 333 71 7 chr3 88748919 88749060 -129288098 - MIR3 SINE MIR -27 181 32 182 37 37 0 chr3 88749157 88749184 -129287974 + (CACCC)n Simple_repeat Simple_repeat 4 31 0 509 273 78 48 chr3 88750880 88751121 -129286037 - MIR SINE MIR 0 262 5 216 347 8 32 chr3 88751422 88751546 -129285612 - L2 LINE L2 -551 2763 2643 423 271 116 8 chr3 88752576 88752705 -129284453 + MIR3 SINE MIR 38 180 -28 377 309 161 0 chr3 88753060 88753228 -129283930 - MIR SINE MIR -48 214 20 1330 185 142 19 chr3 88753280 88753604 -129283554 - MLT1A1 LTR MaLR 0 365 2 206 233 0 17 chr3 88754086 88754146 -129283012 + CT-rich Low_complexity Low_complexity 1 59 0 389 330 110 20 chr3 88755420 88755620 -129281538 - MIR SINE MIR 0 262 45 195 188 83 0 chr3 88757864 88757912 -129279246 + L3b LINE CR1 1302 1353 -230 454 308 23 8 chr3 88757936 88758069 -129279089 - MIR3 SINE MIR -49 159 25 516 265 138 11 chr3 88758748 88758929 -129278229 + MIR SINE MIR 41 244 -18 762 333 133 25 chr3 88760498 88760670 -129276488 - L3 LINE CR1 -1 1576 1424 1856 119 11 0 chr3 88760670 88760979 -129276179 - AluSp SINE Alu 0 313 1 762 333 133 25 chr3 88760979 88761415 -129275743 - L3 LINE CR1 -153 1424 902 940 328 43 41 chr3 88761923 88762389 -129274769 - L3 LINE CR1 -767 810 344 1352 181 64 0 chr3 88762672 88762937 -129274221 + AluJo SINE Alu 1 282 -30 564 202 274 34 chr3 88763354 88763562 -129273596 + MIR SINE MIR 5 262 0 212 203 14 29 chr3 88764530 88764599 -129272559 + G-rich Low_complexity Low_complexity 4 71 0 204 211 0 0 chr3 88766652 88766690 -129270468 + G-rich Low_complexity Low_complexity 2 39 0 198 0 0 0 chr3 88766796 88766818 -129270340 + (A)n Simple_repeat Simple_repeat 1 22 0 343 309 48 8 chr3 88768103 88768229 -129268929 - MIR SINE MIR -31 231 101 829 143 0 8 chr3 88768231 88768357 -129268801 + FLAM_C SINE Alu 3 127 -16 200 290 72 0 chr3 88768362 88768431 -129268727 - MIR SINE MIR -83 125 52 317 367 47 12 chr3 88770665 88770834 -129266324 + MIR3 SINE MIR 20 194 -14 2231 85 3 0 chr3 88770836 88771130 -129266028 - AluY SINE Alu -16 295 1 301 164 19 59 chr3 88771697 88771804 -129265354 + MLT1H LTR MaLR 463 549 0 298 250 220 0 chr3 88772179 88772279 -129264879 - L2 LINE L2 -3 3310 3189 2389 156 112 58 chr3 88772336 88772874 -129264284 + MLT1F1 LTR MaLR 1 567 0 505 241 18 121 chr3 88774394 88774618 -129262540 + MIR SINE MIR 62 262 0 185 297 47 0 chr3 88776202 88776266 -129260892 - L2 LINE L2 0 3272 3206 266 214 101 11 chr3 88776428 88776517 -129260641 - L1MC4a LINE L1 -1633 6175 6079 2053 180 44 23 chr3 88776808 88777242 -129259916 + L1ME1 LINE L1 5443 5885 -281 931 140 0 13 chr3 88777244 88777401 -129259757 + AluJb SINE Alu 158 312 0 935 245 43 18 chr3 88777409 88777691 -129259467 + L1ME1 LINE L1 5875 6163 -3 183 325 71 16 chr3 88779012 88779138 -129258020 + MIR SINE MIR 86 218 -44 324 0 0 0 chr3 88779855 88779891 -129257267 + (TG)n Simple_repeat Simple_repeat 2 37 0 218 217 15 33 chr3 88780432 88780497 -129256661 - MIR SINE MIR -67 141 87 345 304 9 9 chr3 88781209 88781324 -129255834 + GA-rich Low_complexity Low_complexity 2 116 0 288 296 108 0 chr3 88781513 88781666 -129255492 + MIR SINE MIR 17 191 -64 872 193 335 9 chr3 88783249 88783685 -129253473 + SATR1 Satellite Satellite 1 578 -2 1171 208 241 32 chr3 88783718 88784431 -129252727 + SATR1 Satellite Satellite 1 862 -4 959 226 193 25 chr3 88784478 88784886 -129252272 + SATR1 Satellite Satellite 1 476 -404 1946 113 0 10 chr3 88786561 88786863 -129250295 + AluSc SINE Alu 3 301 -8 2002 109 3 7 chr3 88787418 88787721 -129249437 - AluSg SINE Alu -3 307 6 343 299 89 56 chr3 88788120 88788334 -129248824 + MIR SINE MIR 32 252 -10 3164 236 26 35 chr3 88789162 88789410 -129247748 - L1MB3 LINE L1 -31 6152 5903 1956 144 0 0 chr3 88789410 88789715 -129247443 - AluSx SINE Alu -7 305 1 3164 236 26 35 chr3 88789715 88789817 -129247341 - L1MB3 LINE L1 -280 5903 5802 1731 153 0 25 chr3 88789817 88790131 -129247027 - AluSx SINE Alu 0 312 7 3164 236 26 35 chr3 88790131 88791127 -129246031 - L1MB3 LINE L1 -381 5802 4818 1879 139 3 3 chr3 88791162 88791471 -129245687 + AluSp SINE Alu 1 309 -4 1237 223 5 74 chr3 88791551 88791758 -129245400 - L1MA4 LINE L1 -170 6130 5961 1550 185 0 4 chr3 88791758 88792039 -129245119 - AluSx SINE Alu -32 280 1 1237 223 5 74 chr3 88792039 88792222 -129244936 - L1MA4 LINE L1 -339 5961 5767 337 231 112 42 chr3 88792259 88792402 -129244756 + HsTC2 DNA Tc2 1633 1785 -113 1963 136 0 31 chr3 88792407 88792730 -129244428 + AluSp SINE Alu 1 313 0 367 269 40 40 chr3 88792867 88793016 -129244142 + MER5B DNA MER1_type 24 172 -6 793 222 40 0 chr3 88793121 88793319 -129243839 - MER6B DNA MER2_type 0 210 5 1253 142 28 9 chr3 88795220 88795438 -129241720 + AluSq SINE Alu 3 224 -89 1189 204 241 11 chr3 88795440 88796357 -129240801 + SATR1 Satellite Satellite 1 1128 -2 2014 190 99 53 chr3 88796433 88797478 -129239680 + SATR1 Satellite Satellite 1 1092 -1 2284 192 115 11 chr3 88797509 88798978 -129238180 + SATR1 Satellite Satellite 1 1620 -20 29290 95 12 11 chr3 88798978 88803032 -129234126 - HERVE LTR ERV1 -2648 5165 1108 305 194 11 84 chr3 88803097 88803288 -129233870 + (TAA)n Simple_repeat Simple_repeat 2 178 0 21 36 0 0 chr3 88803307 88803335 -129233823 + AT_rich Low_complexity Low_complexity 1 28 0 1392 247 227 16 chr3 88803381 88805372 -129231786 + SATR1 Satellite Satellite 1 2410 -94 790 203 279 35 chr3 88805395 88805899 -129231259 + SATR1 Satellite Satellite 1 626 -2 989 220 206 45 chr3 88805936 88806951 -129230207 + SATR1 Satellite Satellite 1 1179 -44 821 231 192 29 chr3 88807029 88807439 -129229719 + SATR1 Satellite Satellite 1 476 -404 2118 128 0 3 chr3 88809152 88809456 -129227702 + AluY SINE Alu 1 303 -8 274 235 73 73 chr3 88809513 88809649 -129227509 - L2 LINE L2 0 3272 3137 2050 124 0 16 chr3 88810010 88810325 -129226833 - AluSg SINE Alu 0 310 1 287 345 64 32 chr3 88810719 88810939 -129226219 + MIR SINE MIR 32 258 -4 3579 215 17 64 chr3 88811259 88812276 -129224882 - LTR5 LTR ERVK 0 969 1 25 31 0 0 chr3 88812733 88812765 -129224393 + AT_rich Low_complexity Low_complexity 1 32 0 1238 224 14 28 chr3 88812785 88813032 -129224126 - L1MB3 LINE L1 -30 6153 5912 2123 129 3 0 chr3 88813032 88813327 -129223831 - AluSx SINE Alu -14 298 3 1238 224 14 28 chr3 88813327 88813429 -129223729 - L1MB3 LINE L1 -271 5912 5810 1982 137 6 37 chr3 88813429 88813750 -129223408 - AluSx SINE Alu -1 311 1 226 91 45 0 chr3 88813809 88813853 -129223305 + LTR66 LTR ERVL 394 439 -171 189 171 0 0 chr3 88813855 88813890 -129223268 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 * 195 69 0 0 chr3 88813889 88813918 -129223240 + (GA)n Simple_repeat Simple_repeat 2 30 0 1629 196 0 18 chr3 88813920 88814205 -129222953 - AluJo SINE Alu -30 282 3 509 220 8 17 chr3 88814393 88814511 -129222647 - MER58B DNA MER1_type -14 327 211 427 356 97 33 chr3 88814534 88814614 -129222544 + L2 LINE L2 2692 2765 -507 435 54 32 172 chr3 88814614 88814667 -129222491 - MADE1 DNA Mariner 0 80 44 2039 126 13 20 chr3 88814667 88814969 -129222189 + AluSx SINE Alu 1 300 -12 435 54 32 172 chr3 88814969 88815008 -129222150 - MADE1 DNA Mariner -36 44 1 427 356 97 33 chr3 88815008 88815476 -129221682 + L2 LINE L2 2765 3271 -1 201 271 57 43 chr3 88815787 88815857 -129221301 - MIR3 SINE MIR -1 207 137 573 257 0 0 chr3 88816967 88817420 -129219738 + (CA)n Simple_repeat Simple_repeat 1 453 0 659 196 0 22 chr3 88817442 88817626 -129219532 + (CA)n Simple_repeat Simple_repeat 1 180 0 540 266 0 0 chr3 88817662 88817831 -129219327 + (CA)n Simple_repeat Simple_repeat 1 169 0 351 349 20 14 chr3 88818874 88819020 -129218138 - L2 LINE L2 0 3313 3167 301 324 65 7 chr3 88819165 88819304 -129217854 + MIR SINE MIR 43 189 -73 789 240 29 57 chr3 88819326 88819605 -129217553 + MLT1A2 LTR MaLR 87 357 -17 2422 104 52 3 chr3 88820013 88820360 -129216798 + THE1B LTR MaLR 1 364 0 2117 123 0 0 chr3 88821609 88821921 -129215237 - AluSq SINE Alu 0 312 1 736 212 0 0 chr3 88822260 88822392 -129214766 + FLAM_C SINE Alu 2 133 -10 1924 157 20 3 chr3 88822800 88823106 -129214052 + AluSq SINE Alu 1 311 -2 674 219 4 4 chr3 88823114 88823371 -129213787 + GA-rich Low_complexity Low_complexity 1 257 0 336 48 0 0 chr3 88823444 88823486 -129213672 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 1103 214 33 78 chr3 88824220 88824278 -129212880 + L1MB8 LINE L1 5769 5828 -350 2041 132 3 7 chr3 88824278 88824574 -129212584 + AluSx SINE Alu 1 295 -17 1103 214 33 78 chr3 88824574 88824940 -129212218 + L1MB8 LINE L1 5828 6174 -4 876 95 4 6 chr3 88824945 88825209 -129211949 + AluSx SINE Alu 1 309 0 209 261 0 0 chr3 88826594 88826640 -129210518 - MIR SINE MIR -14 248 203 221 308 132 44 chr3 88826778 88826937 -129210221 + L2 LINE L2 3054 3226 -87 2173 103 10 7 chr3 88826937 88827239 -129209919 - AluSg SINE Alu -6 304 2 908 176 16 64 chr3 88827249 88827436 -129209722 - AluJo SINE Alu -23 289 112 877 122 0 43 chr3 88827444 88827583 -129209575 + FLAM_C SINE Alu 1 133 0 2526 84 0 0 chr3 88827965 88828275 -129208883 - AluY SINE Alu -1 310 1 3881 191 22 46 chr3 88829115 88829919 -129207239 + LTR1 LTR ERV1 1 785 0 1274 198 122 31 chr3 88830250 88830293 -129206865 + MLT1C LTR MaLR 1 39 -466 6654 122 19 9 chr3 88830293 88831253 -129205905 + LTR5 LTR ERVK 1 969 0 1274 198 122 31 chr3 88831253 88831635 -129205523 + MLT1C LTR MaLR 39 505 0 537 103 0 111 chr3 88832089 88832206 -129204952 + LTR7 LTR ERV1 1 104 -346 25 51 0 0 chr3 88834219 88834258 -129202900 + AT_rich Low_complexity Low_complexity 1 39 0 802 120 0 0 chr3 88834558 88834666 -129202492 - AluSq/x SINE Alu -205 108 1 1417 110 34 4 chr3 88834694 88834930 -129202228 - SVA Other Other -689 697 455 322 205 104 141 chr3 88834936 88835263 -129201895 + LTR7 LTR ERV1 90 404 -46 2061 100 7 7 chr3 88835285 88835595 -129201563 + LTR7 LTR ERV1 139 448 -2 344 242 164 8 chr3 88836284 88836412 -129200746 + MLT1J2 LTR MaLR 252 399 -51 1970 150 0 3 chr3 88836742 88837072 -129200086 + AluSx SINE Alu 1 312 0 2796 149 12 23 chr3 88837082 88837597 -129199561 + L1MC1 LINE L1 5783 6291 -42 431 185 11 0 chr3 88837597 88837689 -129199469 + CT-rich Low_complexity Low_complexity 4 96 0 265 180 0 0 chr3 88837704 88837715 -129199443 + L1MC1 LINE L1 6268 6278 -55 2038 121 0 4 chr3 88837715 88837987 -129199171 - AluSg SINE Alu -39 271 1 265 180 0 0 chr3 88837987 88838044 -129199114 + L1MC1 LINE L1 6277 6332 -1 234 279 70 12 chr3 88838128 88838214 -129198944 + L1ME3A LINE L1 6036 6126 -44 292 221 97 104 chr3 88838468 88838610 -129198548 - L2 LINE L2 -1350 1964 1822 2003 144 20 0 chr3 88838610 88838915 -129198243 + AluSp SINE Alu 1 311 -2 292 221 97 104 chr3 88838915 88838926 -129198232 - L2 LINE L2 -1492 1822 1812 1992 164 110 60 chr3 88838973 88839166 -129197992 + MLT1D LTR MaLR 1 183 -322 2310 112 0 0 chr3 88839166 88839460 -129197698 + AluSq SINE Alu 1 294 -19 1992 164 110 60 chr3 88839460 88839747 -129197411 + MLT1D LTR MaLR 183 505 0 1841 131 64 0 chr3 88839802 88840085 -129197073 + AluY SINE Alu 2 302 -9 1751 136 100 0 chr3 88840219 88840498 -129196660 - AluSx SINE Alu -5 307 1 354 320 187 11 chr3 88840547 88840900 -129196258 - L2 LINE L2 -2247 1067 653 2044 109 53 0 chr3 88841360 88841643 -129195515 - AluSx SINE Alu -14 298 1 2010 154 76 72 chr3 88842033 88842638 -129194520 + MER4A LTR ERV1 2 465 0 4086 192 51 12 chr3 88842704 88843528 -129193630 + MER21B LTR ERV1 1 856 -7 11953 224 54 46 chr3 88843547 88843627 -129193531 + MER21B-int LTR ERV1 1 79 -4112 2356 91 3 0 chr3 88843627 88843923 -129193235 + AluY SINE Alu 1 297 -14 11953 224 54 46 chr3 88843923 88845850 -129191308 + MER21B-int LTR ERV1 79 1989 -2202 2468 99 0 3 chr3 88845850 88846162 -129190996 + AluSq SINE Alu 1 311 -2 11953 224 54 46 chr3 88846162 88846950 -129190208 + MER21B-int LTR ERV1 1989 2769 -1422 2077 118 44 0 chr3 88846950 88847246 -129189912 + AluSp SINE Alu 3 311 -2 11953 224 54 46 chr3 88847246 88847468 -129189690 + MER21B-int LTR ERV1 2769 2988 -1203 2050 86 83 7 chr3 88847468 88847758 -129189400 + AluSx SINE Alu 1 312 0 11953 224 54 46 chr3 88847758 88847973 -129189185 + MER21B-int LTR ERV1 2988 3268 -923 2115 148 19 125 chr3 88847973 88848169 -129188989 + MSTA LTR MaLR 1 118 -310 2183 124 3 0 chr3 88848169 88848467 -129188691 + AluSx SINE Alu 1 299 -13 2115 148 19 125 chr3 88848467 88848749 -129188409 + MSTA LTR MaLR 118 428 0 11953 224 54 46 chr3 88848749 88848886 -129188272 + MER21B-int LTR ERV1 3268 3402 -789 2344 110 0 0 chr3 88848886 88849186 -129187972 - AluSg SINE Alu -10 300 1 1567 69 45 0 chr3 88849508 88849710 -129187448 + AluY SINE Alu 94 304 -7 2314 99 0 13 chr3 88850918 88851222 -129185936 - AluSx SINE Alu -12 300 1 636 302 61 0 chr3 88851434 88851646 -129185512 - MER82 DNA MER2_type 0 653 429 2087 124 37 13 chr3 88851646 88851945 -129185213 - AluSx SINE Alu -6 306 1 197 309 118 50 chr3 88852606 88852826 -129184332 - L2 LINE L2 -527 2787 2553 3139 204 68 40 chr3 88852844 88852960 -129184198 + MER45B DNA AcHobo 11 122 -1459 2113 117 0 0 chr3 88852960 88853283 -129183875 - AluSx SINE Alu 0 323 1 3139 204 68 40 chr3 88853283 88853799 -129183359 + MER45B DNA AcHobo 122 681 -900 2062 146 0 0 chr3 88853799 88854093 -129183065 + AluSg SINE Alu 1 317 0 187 43 0 0 chr3 88854093 88854116 -129183042 + (CAAA)n Simple_repeat Simple_repeat 2 180 0 3139 204 68 40 chr3 88854116 88854487 -129182671 + MER45B DNA AcHobo 681 1040 0 668 168 23 53 chr3 88854820 88854951 -129182207 + FLAM_A SINE Alu 1 127 -6 351 203 25 127 chr3 88855094 88855252 -129181906 + MIR SINE MIR 74 215 -47 579 227 31 133 chr3 88855259 88855515 -129181643 - MLT1C LTR MaLR 0 467 161 218 213 0 13 chr3 88855515 88855590 -129181568 + (TA)n Simple_repeat Simple_repeat 1 74 0 1490 140 5 9 chr3 88855592 88855837 -129181321 - AluSx SINE Alu 0 306 63 25 31 0 0 chr3 88956039 88956071 -129081087 + AT_rich Low_complexity Low_complexity 1 32 0 2459 97 0 0 chr3 88956236 88956545 -129080613 - AluSc SINE Alu 0 309 1 315 0 0 0 chr3 88956796 88956831 -129080327 + (CA)n Simple_repeat Simple_repeat 2 36 0 198 0 0 0 chr3 88957799 88957821 -129079337 + (TG)n Simple_repeat Simple_repeat 1 22 0 283 236 174 94 chr3 88961301 88961513 -129075645 - MIR SINE MIR -6 256 28 233 122 54 0 chr3 88962554 88962628 -129074530 + (TA)n Simple_repeat Simple_repeat 1 78 0 243 0 0 0 chr3 88964199 88964226 -129072932 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 357 234 96 67 chr3 88965746 88965876 -129071282 - MER113 DNA MER1_type? -304 217 77 1850 138 6 46 chr3 88965876 88966201 -129070957 + AluJo SINE Alu 1 312 0 357 234 96 67 chr3 88966201 88966279 -129070879 - MER113 DNA MER1_type? -444 77 3 280 198 161 37 chr3 88966430 88966511 -129070647 + L2 LINE L2 3201 3291 -22 207 156 0 0 chr3 88966672 88966704 -129070454 + GA-rich Low_complexity Low_complexity 3 34 0 394 275 47 20 chr3 88966815 88966964 -129070194 - MER102b DNA MER1_type -51 290 138 406 287 0 0 chr3 88967989 88968097 -129069061 + MIR SINE MIR 53 160 -102 644 196 54 31 chr3 88968157 88968230 -129068928 + MER58 DNA MER1_type 6 76 -2344 2284 111 0 0 chr3 88968230 88968537 -129068621 - AluSc SINE Alu -2 307 1 644 196 54 31 chr3 88968537 88968663 -129068495 + MER58 DNA MER1_type 76 2420 0 253 105 0 0 chr3 88969444 88969482 -129067676 - MADE1 DNA Mariner -41 39 2 2095 128 4 0 chr3 88969634 88969941 -129067217 + AluSx SINE Alu 3 310 0 283 274 21 11 chr3 88970358 88970453 -129066705 + L2 LINE L2 3173 3268 -4 2045 184 54 41 chr3 88972150 88972604 -129064554 + Charlie1b DNA MER1_type 1 464 -2297 2293 90 3 7 chr3 88972604 88972904 -129064254 - AluSc SINE Alu -10 299 1 2045 184 54 41 chr3 88972904 88972965 -129064193 + Charlie1b DNA MER1_type 464 523 0 405 299 118 42 chr3 88973381 88974091 -129063067 - L2 LINE L2 -85 3228 2471 23 0 0 0 chr3 88975212 88975235 -129061923 + AT_rich Low_complexity Low_complexity 1 23 0 237 108 0 0 chr3 88975704 88975741 -129061417 + (TG)n Simple_repeat Simple_repeat 1 37 0 365 315 21 7 chr3 88979399 88979542 -129057616 - MIR SINE MIR -13 249 105 1437 177 0 79 chr3 88980459 88980776 -129056382 + AluJo SINE Alu 1 292 -20 213 283 149 20 chr3 88981494 88981727 -129055431 + L2 LINE L2 2787 3056 -257 222 219 78 0 chr3 88981824 88981888 -129055270 + L2 LINE L2 3195 3263 -50 801 169 62 22 chr3 88982798 88982976 -129054182 + MER5A DNA MER1_type 1 185 -4 206 169 42 14 chr3 88983441 88983512 -129053646 + (TA)n Simple_repeat Simple_repeat 1 73 0 381 235 0 0 chr3 88984187 88984272 -129052886 - MER5A DNA MER1_type 0 189 105 2323 83 3 17 chr3 88984353 88984653 -129052505 + AluY SINE Alu 1 296 -15 800 253 67 56 chr3 88984737 88985103 -129052055 - L1ME LINE L1 -615 5547 5165 2112 110 0 38 chr3 88985103 88985422 -129051736 - AluY SINE Alu -4 307 1 800 253 67 56 chr3 88985422 88985708 -129051450 - L1ME LINE L1 -997 5165 4884 21 0 0 0 chr3 88985975 88985996 -129051162 + AT_rich Low_complexity Low_complexity 1 21 0 521 267 6 24 chr3 88987256 88987421 -129049737 - MIR SINE MIR -68 194 33 238 150 0 0 chr3 88987534 88987574 -129049584 - L2 LINE L2 -90 3223 3184 2195 84 7 7 chr3 88987726 88988013 -129049145 + AluSc SINE Alu 1 287 -22 214 326 93 0 chr3 88988306 88988392 -129048766 + MIR SINE MIR 43 136 -72 611 180 85 178 chr3 88988512 88988889 -129048269 - MER2 DNA MER2_type -1 343 2 197 279 0 33 chr3 88991167 88991228 -129045930 - MIR3 SINE MIR -39 169 111 1848 114 110 14 chr3 88992515 88992796 -129044362 + AluSg SINE Alu 3 310 0 221 289 58 19 chr3 88993372 88993476 -129043682 + MIR3 SINE MIR 10 117 -91 210 162 0 0 chr3 88993580 88993617 -129043541 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 373 214 12 12 chr3 88993682 88993766 -129043392 - L1MA9 LINE L1 -147 6165 6082 467 170 45 27 chr3 88993780 88993853 -129043305 + L1MA9 LINE L1 6161 6238 -74 1580 181 123 0 chr3 88993853 88994179 -129042979 - MER47A DNA MER2_type 0 366 1 467 170 45 27 chr3 88994179 88994217 -129042941 + L1MA9 LINE L1 6238 6274 -38 23 0 0 0 chr3 88994219 88994242 -129042916 + AT_rich Low_complexity Low_complexity 1 23 0 200 303 53 53 chr3 88994528 88994660 -129042498 + L2 LINE L2 3182 3313 0 251 321 132 47 chr3 88996208 88996420 -129040738 + MIR SINE MIR 14 243 -19 234 180 40 0 chr3 88996595 88996645 -129040513 - MIR SINE MIR -10 252 201 528 275 58 21 chr3 88996736 88996925 -129040233 - MIR SINE MIR -39 223 28 626 298 27 9 chr3 88997018 88997243 -129039915 - MIR SINE MIR -3 259 31 422 241 76 21 chr3 88997832 88997977 -129039181 + MIR SINE MIR 109 261 -1 343 266 0 13 chr3 88998258 88998337 -129038821 - MER91A DNA MER1_type 0 196 119 180 133 0 0 chr3 89000353 89000383 -129036775 + L2 LINE L2 3243 3272 0 272 266 110 9 chr3 89001514 89001623 -129035535 - MIR SINE MIR -66 196 77 944 295 56 34 chr3 89002323 89002791 -129034367 - MLT1L LTR MaLR -8 607 130 978 251 79 9 chr3 89004874 89005189 -129031969 + MER113 DNA MER1_type? 9 345 -176 373 281 106 0 chr3 89006294 89006454 -129030704 + MIR SINE MIR 74 250 -12 2578 56 0 10 chr3 89006588 89006892 -129030266 + AluY SINE Alu 1 301 -10 293 277 48 0 chr3 89010316 89010399 -129026759 + MER103 DNA DNA 4 90 -76 1032 230 60 52 chr3 89010819 89011188 -129025970 + MER113 DNA MER1_type? 1 372 -149 200 253 175 90 chr3 89011267 89011433 -129025725 + MER5A DNA MER1_type 10 189 0 1237 124 0 6 chr3 89012636 89012813 -129024345 + AluSg/x SINE Alu 137 312 0 535 288 44 14 chr3 89013524 89013601 -129023557 + L2 LINE L2 3019 3092 -221 1974 140 27 0 chr3 89013601 89013894 -129023264 - AluSx SINE Alu -11 301 1 535 288 44 14 chr3 89013894 89014044 -129023114 + L2 LINE L2 3092 3313 0 194 281 88 0 chr3 89014798 89014855 -129022303 - L2 LINE L2 -2 3311 3250 268 264 14 0 chr3 89016386 89016458 -129020700 - MER5C DNA MER1_type -200 124 52 240 35 0 0 chr3 89016465 89016494 -129020664 + (TAG)n Simple_repeat Simple_repeat 2 30 0 317 368 51 0 chr3 89017404 89017638 -129019520 + L2 LINE L2 2645 2890 -424 180 0 0 0 chr3 89019179 89019199 -129017959 + (CA)n Simple_repeat Simple_repeat 1 20 0 1556 269 32 45 chr3 89020749 89021281 -129015877 - ERVL LTR ERVL -439 5325 4801 2360 103 39 28 chr3 89022590 89022950 -129014208 - THE1B LTR MaLR 0 364 1 876 213 42 51 chr3 89023070 89023286 -129013872 - MER58A DNA MER1_type -10 214 1 1680 109 127 11 chr3 89023341 89023608 -129013550 + AluSg1 SINE Alu 1 298 -11 250 241 60 90 chr3 89024558 89024724 -129012434 - MIR SINE MIR -12 250 90 800 73 65 16 chr3 89025616 89025739 -129011419 + L1PA12 LINE L1 6040 6168 0 1945 138 0 3 chr3 89025750 89026064 -129011094 - AluSg SINE Alu 0 310 1 496 275 50 99 chr3 89026085 89026467 -129010691 - L1 LINE L1 -1725 4421 4059 1645 138 35 0 chr3 89026515 89026797 -129010361 - L1MA8 LINE L1 -3 6288 5997 250 257 0 40 chr3 89026962 89027036 -129010122 + L2 LINE L2 3193 3263 -9 791 271 99 7 chr3 89029308 89029600 -129007558 - MER113 DNA MER1_type? -80 441 123 1756 163 10 3 chr3 89029601 89029896 -129007262 + L1MB2 LINE L1 5867 6163 -8 1196 183 76 15 chr3 89029919 89030181 -129006977 + MLT1D LTR MaLR 180 457 -48 644 273 55 4 chr3 89030534 89030772 -129006386 + MIR SINE MIR 13 262 0 2275 106 3 0 chr3 89030857 89031150 -129006008 - AluSg SINE Alu -16 294 1 1258 149 13 53 chr3 89031647 89031875 -129005283 - MER20 DNA MER1_type 0 219 1 22 0 0 0 chr3 89031934 89031956 -129005202 + AT_rich Low_complexity Low_complexity 1 22 0 314 294 34 17 chr3 89032206 89032325 -129004833 - MIR3 SINE MIR -43 165 45 1875 180 36 59 chr3 89032750 89033228 -129003930 + MLT1C LTR MaLR 1 467 0 312 233 107 0 chr3 89035380 89035483 -129001675 - MIR SINE MIR -48 214 101 1342 192 28 8 chr3 89035523 89035778 -129001380 + MLT1F1 LTR MaLR 308 567 0 431 211 0 11 chr3 89035781 89035871 -129001287 - MIR SINE MIR -173 89 1 1821 180 79 94 chr3 89037843 89037913 -128999245 + MLT1F LTR MaLR 1 71 -471 2434 108 88 23 chr3 89037913 89038311 -128998847 - MSTA LTR MaLR -4 424 1 1821 180 79 94 chr3 89038311 89038785 -128998373 + MLT1F LTR MaLR 71 537 -5 205 333 9 18 chr3 89038802 89038913 -128998245 - MIR SINE MIR -7 255 146 397 184 126 0 chr3 89038926 89039013 -128998145 + MIR SINE MIR 161 258 -4 381 252 67 30 chr3 89039017 89039152 -128998006 - MIR SINE MIR -106 156 17 2542 119 8 3 chr3 89039498 89039860 -128997298 - THE1B LTR MaLR 0 364 1 2964 148 79 14 chr3 89039947 89040315 -128996843 + MER1A DNA MER1_type 3 412 -2288 267 60 60 0 chr3 89040315 89040365 -128996793 + (TAA)n Simple_repeat Simple_repeat 1 53 0 2964 148 79 14 chr3 89040365 89040489 -128996669 + MER1A DNA MER1_type 412 527 0 329 51 0 0 chr3 89040753 89040792 -128996366 - MADE1 DNA Mariner -41 39 1 516 270 67 49 chr3 89042414 89042681 -128994477 + MER113 DNA MER1_type? 186 457 -64 42025 65 4 3 chr3 89042888 89049025 -128988133 - L1PA5 LINE L1 -3 6151 11 904 139 17 101 chr3 89049341 89049578 -128987580 - MER20 DNA MER1_type -2 217 1 349 302 43 0 chr3 89050008 89050147 -128987011 - MIR SINE MIR -35 227 83 778 246 109 52 chr3 89050266 89050547 -128986611 - MLT1C LTR MaLR -34 433 169 2134 117 0 0 chr3 89050547 89050828 -128986330 - AluSg SINE Alu -29 281 1 778 246 109 52 chr3 89050828 89050909 -128986249 - MLT1C LTR MaLR -298 169 94 2300 81 10 13 chr3 89050909 89051219 -128985939 - AluSc SINE Alu 0 309 1 778 246 109 52 chr3 89051219 89051315 -128985843 - MLT1C LTR MaLR -373 94 1 216 267 27 13 chr3 89052137 89052212 -128984946 + MIR SINE MIR 79 154 -108 22 0 0 0 chr3 89052516 89052538 -128984620 + AT_rich Low_complexity Low_complexity 1 22 0 3515 266 77 41 chr3 89052588 89052643 -128984515 - HAL1 LINE L1 -105 2402 2350 2418 81 0 0 chr3 89052643 89052941 -128984217 - AluY SINE Alu -13 298 1 3515 266 77 41 chr3 89052941 89053648 -128983510 - HAL1 LINE L1 -157 2350 1670 2200 121 0 0 chr3 89053648 89053945 -128983213 - AluSc SINE Alu -12 297 1 3515 266 77 41 chr3 89053945 89054752 -128982406 - HAL1 LINE L1 -837 1670 775 208 200 50 0 chr3 89054760 89054820 -128982338 + (TG)n Simple_repeat Simple_repeat 1 63 0 189 0 0 0 chr3 89054841 89054862 -128982296 + (C)n Simple_repeat Simple_repeat 1 21 0 467 229 0 36 chr3 89054886 89055052 -128982106 + (CCCCG)n Simple_repeat Simple_repeat 2 161 0 25831 37 1 2 chr3 89055170 89059378 -128977780 - L1P LINE L1 -1946 4200 1 2535 139 81 44 chr3 89059380 89060111 -128977047 - L1MB4 LINE L1 -355 5825 5060 2316 112 0 0 chr3 89060530 89060833 -128976325 - AluSq SINE Alu -10 303 1 22 0 0 0 chr3 89061091 89061113 -128976045 + AT_rich Low_complexity Low_complexity 1 22 0 412 287 47 0 chr3 89062255 89062384 -128974774 + MIR SINE MIR 124 258 -4 258 346 102 57 chr3 89062482 89062765 -128974393 + L2 LINE L2 2870 3165 -107 1116 170 163 0 chr3 89064100 89064377 -128972781 - MER33 DNA MER1_type -2 322 1 3499 18 0 0 chr3 89065332 89065727 -128971431 - L1PA2 LINE L1 -1 6154 5760 275 235 62 56 chr3 89069276 89069438 -128967720 + L1PA4 LINE L1 3914 4076 -2070 10160 30 2 0 chr3 89069552 89071559 -128965599 + L1PA4 LINE L1 4151 6152 -3 993 157 52 125 chr3 89071571 89071916 -128965242 + L1MB4 LINE L1 5848 6167 -13 203 355 140 0 chr3 89072909 89073016 -128964142 - L2 LINE L2 -14 3258 3137 615 235 22 22 chr3 89073115 89073298 -128963860 + MER5A DNA MER1_type 6 188 -1 248 286 107 45 chr3 89073404 89073582 -128963576 - L2 LINE L2 -206 3107 2919 2067 148 0 0 chr3 89074375 89074665 -128962493 + AluSx SINE Alu 1 290 -22 1401 219 68 32 chr3 89074688 89075057 -128962101 - MER58D DNA MER1_type -4 382 1 316 146 0 0 chr3 89075067 89075115 -128962043 - MLT2C1 LTR ERVL 0 397 350 217 182 15 30 chr3 89075127 89075193 -128961965 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 272 273 68 68 chr3 89075213 89075505 -128961653 - MLT2D LTR ERVL -55 465 170 2226 80 7 28 chr3 89075532 89075855 -128961303 + AluSp SINE Alu 1 317 0 2287 103 0 3 chr3 89075855 89076155 -128961003 + AluSc SINE Alu 1 299 -10 2378 186 31 11 chr3 89076363 89076820 -128960338 + MLT1C LTR MaLR 1 466 -1 1421 167 59 46 chr3 89076881 89077186 -128959972 - AluJb SINE Alu -3 309 1 334 327 135 5 chr3 89078701 89078909 -128958249 - MIR SINE MIR -13 249 15 6751 174 36 20 chr3 89079390 89081205 -128955953 - L1PA16 LINE L1 -9 6157 4294 2249 121 0 13 chr3 89081205 89081520 -128955638 + AluSx SINE Alu 1 311 -1 6751 174 36 20 chr3 89081520 89082075 -128955083 - L1PA16 LINE L1 -1872 4294 3750 316 326 54 15 chr3 89082078 89082316 -128954842 - L1MC4a LINE L1 -264 5857 5619 376 349 62 78 chr3 89082462 89082820 -128954338 + L2 LINE L2 2916 3267 -5 206 231 15 0 chr3 89082873 89082938 -128954220 + GA-rich Low_complexity Low_complexity 4 69 0 216 294 0 0 chr3 89082977 89083028 -128954130 + GA-rich Low_complexity Low_complexity 1 51 0 2420 55 0 51 chr3 89083076 89083388 -128953770 + AluY SINE Alu 1 296 -15 195 226 0 0 chr3 89083388 89083431 -128953727 + GA-rich Low_complexity Low_complexity 8 53 0 424 265 0 59 chr3 89083547 89083683 -128953475 - L2 LINE L2 -15 3298 3171 394 94 0 0 chr3 89083762 89083815 -128953343 + MADE1 DNA Mariner 28 80 0 249 264 188 7 chr3 89083843 89083987 -128953171 - L2 LINE L2 -248 3065 2896 2177 88 10 23 chr3 89084050 89084356 -128952802 + AluSx SINE Alu 3 304 -8 1830 190 55 55 chr3 89084412 89084869 -128952289 - MLT1C LTR MaLR -8 459 3 437 175 63 56 chr3 89087232 89087358 -128949800 + MER96B DNA MER1_type? 1 127 -290 2057 71 31 46 chr3 89087582 89087932 -128949226 - L1P4 LINE L1 -375 5799 5455 359 301 151 16 chr3 89088460 89088646 -128948512 + MIR SINE MIR 15 225 -37 2020 76 8 8 chr3 89088857 89089119 -128948039 - AluY SINE Alu -7 304 43 2331 113 0 3 chr3 89090329 89090639 -128946519 + AluSx SINE Alu 1 309 -3 431 121 60 0 chr3 89091273 89091356 -128945802 + L1MB3 LINE L1 6087 6174 -9 359 229 46 9 chr3 89091488 89091597 -128945561 + MIR SINE MIR 24 136 -126 2968 117 14 7 chr3 89091623 89092068 -128945090 + L1PA14 LINE L1 5710 6157 -4 1968 94 81 73 chr3 89092102 89092401 -128944757 + THE1C LTR MaLR 1 305 -70 2240 122 0 6 chr3 89092401 89092713 -128944445 - AluSg SINE Alu 0 310 1 1968 94 81 73 chr3 89092713 89092785 -128944373 + THE1C LTR MaLR 305 375 0 185 351 26 0 chr3 89092820 89092897 -128944261 + MIR SINE MIR 178 256 -6 1955 190 40 3 chr3 89093434 89093786 -128943372 - MLT1A1 LTR MaLR 0 365 1 2349 97 0 0 chr3 89094050 89094339 -128942819 + AluSx SINE Alu 1 289 -23 326 241 161 56 chr3 89094456 89094532 -128942626 - MER96B DNA MER1_type? -237 180 113 2164 79 16 16 chr3 89094532 89094836 -128942322 + AluSc SINE Alu 1 304 -5 326 241 161 56 chr3 89094836 89094921 -128942237 - MER96B DNA MER1_type? -304 113 2 619 213 178 10 chr3 89094973 89095175 -128941983 - MIR SINE MIR -15 247 12 257 284 42 21 chr3 89095950 89096045 -128941113 + MER5A DNA MER1_type 77 184 -5 280 273 45 18 chr3 89096090 89096200 -128940958 - MIR SINE MIR -148 114 2 356 280 131 39 chr3 89096321 89096603 -128940555 - LTR16C LTR ERVL -9 482 175 354 98 0 0 chr3 89096617 89096668 -128940490 + (CA)n Simple_repeat Simple_repeat 1 51 0 660 300 153 18 chr3 89097342 89097892 -128939266 + L2 LINE L2 1138 1761 -1553 21 36 0 0 chr3 89098559 89098587 -128938571 + AT_rich Low_complexity Low_complexity 1 28 0 297 75 0 0 chr3 89098847 89098887 -128938271 + (CA)n Simple_repeat Simple_repeat 1 40 0 440 323 41 64 chr3 89099650 89099870 -128937288 + MIR SINE MIR 1 215 -47 359 289 169 6 chr3 89101294 89101460 -128935698 + L2 LINE L2 2151 2343 -971 303 230 82 67 chr3 89101462 89101597 -128935561 + L1ME3A LINE L1 6027 6163 -7 1435 99 5 0 chr3 89101720 89101921 -128935237 - L1PB1 LINE L1 -5 6146 5945 590 300 104 56 chr3 89101925 89102100 -128935058 + L2 LINE L2 2458 2623 -690 1081 166 217 103 chr3 89102100 89102267 -128934891 + MLT1B LTR MaLR 1 148 -242 2135 122 3 28 chr3 89102267 89102404 -128934754 + AluSx SINE Alu 1 140 -172 2200 114 13 3 chr3 89102404 89102711 -128934447 + AluSg SINE Alu 1 310 0 2135 122 3 28 chr3 89102711 89102893 -128934265 + AluSx SINE Alu 140 312 0 1081 166 217 103 chr3 89102893 89103075 -128934083 + MLT1B LTR MaLR 148 390 0 590 300 104 56 chr3 89103075 89103710 -128933448 + L2 LINE L2 2623 3304 -9 738 298 106 74 chr3 89103858 89104136 -128933022 + HAL1 LINE L1 22 290 -2217 2192 110 0 7 chr3 89104136 89104436 -128932722 - AluSx SINE Alu -14 298 1 738 298 106 74 chr3 89104436 89104871 -128932287 + HAL1 LINE L1 290 758 -1749 567 218 10 0 chr3 89104966 89105067 -128932091 + MER7A DNA MER2_type 1 100 -246 2262 105 10 13 chr3 89105266 89105571 -128931587 - AluSq SINE Alu -9 304 1 2546 207 13 58 chr3 89206228 89206547 -128830611 - L1 LINE L1 -1098 5048 4773 1962 111 3 60 chr3 89206547 89206885 -128830273 - AluY SINE Alu 0 311 1 2546 207 13 58 chr3 89206885 89207242 -128829916 - L1 LINE L1 -1373 4773 4402 586 146 0 10 chr3 89207361 89207457 -128829701 - AluS SINE Alu -216 96 2 400 294 92 11 chr3 89208122 89208306 -128828852 - MIR SINE MIR -52 210 12 658 219 2 5 chr3 89208406 89208819 -128828339 + (TGGA)n Simple_repeat Simple_repeat 1 411 0 364 287 132 0 chr3 89209858 89209987 -128827171 + MIR SINE MIR 6 151 -111 343 277 99 78 chr3 89209987 89210399 -128826759 - L2 LINE L2 -2 3270 2850 2048 112 58 10 chr3 89210678 89210972 -128826186 + AluSq SINE Alu 1 308 -5 771 214 6 6 chr3 89211663 89211845 -128825313 + MER53 DNA DNA 8 189 0 336 278 9 46 chr3 89212439 89212547 -128824611 - MIR SINE MIR -70 192 89 307 354 71 17 chr3 89212850 89213147 -128824011 + L1ME3A LINE L1 5611 5926 -244 2202 70 3 0 chr3 89213220 89213504 -128823654 + L1PA8 LINE L1 5886 6170 -2 1486 135 29 147 chr3 89213618 89213966 -128823192 - AluSg SINE Alu -3 307 1 1977 135 21 0 chr3 89214585 89214867 -128822291 - AluSx SINE Alu -22 290 3 732 193 0 0 chr3 89215089 89215425 -128821733 + (CTAAG)n Simple_repeat Simple_repeat 1 336 0 993 188 25 0 chr3 89216211 89216408 -128820750 - MER58A DNA MER1_type -14 210 9 2703 121 56 36 chr3 89216815 89216991 -128820167 + L1MA8 LINE L1 5775 5946 -345 1834 180 6 3 chr3 89216991 89217302 -128819856 + AluJo SINE Alu 1 312 0 2703 121 56 36 chr3 89217302 89217629 -128819529 + L1MA8 LINE L1 5946 6288 -3 25 0 0 0 chr3 89217664 89217689 -128819469 + AT_rich Low_complexity Low_complexity 1 25 0 2243 110 7 13 chr3 89217694 89218003 -128819155 - AluSx SINE Alu -3 309 3 25 31 0 0 chr3 89218203 89218235 -128818923 + AT_rich Low_complexity Low_complexity 1 32 0 1387 123 59 0 chr3 89218235 89218439 -128818719 + AluSx SINE Alu 1 216 -96 230 371 69 0 chr3 89218439 89218671 -128818487 + L2 LINE L2 2124 2371 -943 2095 130 0 0 chr3 89219779 89220084 -128817074 + AluSx SINE Alu 1 305 0 457 267 62 36 chr3 89220086 89220281 -128816877 - MIR SINE MIR -32 230 31 746 221 30 91 chr3 89220299 89220530 -128816628 + MER20 DNA MER1_type 1 217 -2 1414 175 91 33 chr3 89221845 89222119 -128815039 - AluJb SINE Alu -22 290 1 650 286 20 40 chr3 89222202 89222450 -128814708 - MIR SINE MIR -12 250 8 417 278 103 76 chr3 89224597 89225043 -128812115 - L2 LINE L2 -11 3261 2804 269 292 97 9 chr3 89225518 89225631 -128811527 + L2 LINE L2 3178 3300 -13 540 258 16 0 chr3 89225721 89225845 -128811313 - MIR SINE MIR -38 224 99 2592 228 65 7 chr3 89225861 89226458 -128810700 + ERVL LTR ERVL 1518 2149 -3615 2284 110 3 0 chr3 89226775 89227083 -128810075 + AluSc SINE Alu 1 309 0 2403 82 0 0 chr3 89227317 89227610 -128809548 - AluY SINE Alu -14 297 5 252 158 0 0 chr3 89228260 89228317 -128808841 + GA-rich Low_complexity Low_complexity 2 58 0 1492 157 36 16 chr3 89228386 89228635 -128808523 + AluJo SINE Alu 42 295 -17 455 281 166 15 chr3 89228637 89228836 -128808322 - L2 LINE L2 -609 2705 2477 332 235 12 35 chr3 89228809 89228894 -128808264 + MER5A DNA MER1_type 107 189 0 * 460 300 189 69 chr3 89229024 89229206 -128807952 - L2 LINE L2 -43 3229 3070 2013 130 27 7 chr3 89229206 89229505 -128807653 + AluSq SINE Alu 1 305 -8 460 300 189 69 chr3 89229505 89230192 -128806966 - L2 LINE L2 -202 3070 2243 234 0 0 0 chr3 89230442 89230468 -128806690 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4105 114 190 79 chr3 89231496 89232892 -128804266 + pTR5 LTR ERV1 743 2438 0 245 311 136 10 chr3 89233000 89233103 -128804055 + MIR3 SINE MIR 57 172 -36 352 291 39 0 chr3 89233165 89233268 -128803890 + L1M4 LINE L1 2420 2526 -3620 404 196 161 21 chr3 89233304 89233447 -128803711 + MLT1J2 LTR MaLR 1 163 -287 459 284 69 23 chr3 89233764 89233801 -128803357 + L1M4 LINE L1 2678 2712 -3434 231 61 0 0 chr3 89233801 89233834 -128803324 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 459 284 69 23 chr3 89233834 89234057 -128803101 + L1M4 LINE L1 2712 2950 -3196 357 212 20 10 chr3 89234081 89234180 -128802978 - L1M4 LINE L1 -1424 4722 4623 2152 110 6 41 chr3 89235301 89235618 -128801540 - AluSg SINE Alu -2 308 3 232 379 51 19 chr3 89236014 89236228 -128800930 + MIR SINE MIR 32 252 -10 3446 209 16 75 chr3 89236552 89237581 -128799577 - LTR5 LTR ERVK 0 969 1 26 0 0 0 chr3 89238032 89238058 -128799100 + AT_rich Low_complexity Low_complexity 1 26 0 2832 233 28 43 chr3 89238083 89238335 -128798823 - L1MB3 LINE L1 -30 6153 5899 2009 146 0 3 chr3 89238335 89238629 -128798529 - AluSx SINE Alu -17 295 3 2832 233 28 43 chr3 89238629 89238731 -128798427 - L1MB3 LINE L1 -284 5899 5797 1876 133 0 44 chr3 89238731 89239047 -128798111 - AluSx SINE Alu 0 312 11 2832 233 28 43 chr3 89239047 89240047 -128797111 - L1MB3 LINE L1 -386 5797 4818 2120 108 3 16 chr3 89240092 89240398 -128796760 + AluSp SINE Alu 1 302 -11 1361 204 3 65 chr3 89240482 89240681 -128796477 - L1MA4 LINE L1 -175 6125 5960 1770 155 0 3 chr3 89240681 89240965 -128796193 - AluSx SINE Alu -29 283 1 1361 204 3 65 chr3 89240965 89241148 -128796010 - L1MA4 LINE L1 -340 5960 5767 2123 128 0 34 chr3 89241331 89241652 -128795506 + AluSp SINE Alu 1 310 -3 410 207 73 87 chr3 89241802 89241952 -128795206 + MER5B DNA MER1_type 25 172 -6 716 228 46 0 chr3 89242057 89242254 -128794904 - MER6B DNA MER2_type 0 210 5 1277 151 27 14 chr3 89244148 89244367 -128792791 + AluSq SINE Alu 1 222 -91 787 224 279 3 chr3 89244371 89244701 -128792457 + SATR1 Satellite Satellite 48 468 -2 1109 153 279 51 chr3 89244730 89245103 -128792055 + SATR1 Satellite Satellite 12 469 -1 714 245 179 60 chr3 89245132 89245609 -128791549 + SATR1 Satellite Satellite 1 533 -2 2158 190 110 15 chr3 89245646 89247939 -128789219 + SATR1 Satellite Satellite 1 2509 -20 27791 96 11 13 chr3 89247939 89252007 -128785151 - HERVE LTR ERV1 -2648 5165 1108 220 240 0 31 chr3 89252244 89252340 -128784818 + (TAA)n Simple_repeat Simple_repeat 1 93 0 1975 206 116 7 chr3 89252360 89254564 -128782594 - SATR1 Satellite Satellite 0 2444 1 310 250 6 39 chr3 89254573 89254729 -128782429 + (TAA)n Simple_repeat Simple_repeat 1 151 0 207 228 13 57 chr3 89254763 89254921 -128782237 + (TAA)n Simple_repeat Simple_repeat 1 151 0 1967 208 119 15 chr3 89254946 89256801 -128780357 - SATR1 Satellite Satellite 0 2046 1 280 245 6 57 chr3 89256810 89256969 -128780189 + (TAA)n Simple_repeat Simple_repeat 1 151 0 24 32 0 0 chr3 89257021 89257052 -128780106 + AT_rich Low_complexity Low_complexity 1 31 0 1805 195 127 15 chr3 89257188 89258167 -128778991 + SATR1 Satellite Satellite 1 1088 -207 275 247 56 56 chr3 89258171 89258387 -128778771 - MLT1E LTR MaLR -227 397 193 2150 101 28 0 chr3 89258486 89258773 -128778385 + AluSx SINE Alu 1 295 -17 609 267 0 0 chr3 89258783 89258989 -128778169 + FLAM_C SINE Alu 2 207 0 329 274 0 32 chr3 89258991 89259115 -128778043 - MLT1E LTR MaLR -473 120 1 648 228 58 0 chr3 89259152 89259358 -128777800 - L1MEd LINE L1 -5326 793 576 2267 114 0 0 chr3 89259369 89259659 -128777499 - AluSq SINE Alu -21 292 3 2080 132 10 0 chr3 89259868 89260156 -128777002 + AluSx SINE Alu 1 291 -21 1547 207 2 19 chr3 89260810 89260973 -128776185 - L1M4 LINE L1 -521 5653 5496 2232 123 0 7 chr3 89260973 89261282 -128775876 - AluSx SINE Alu -5 307 1 1547 207 2 19 chr3 89261282 89261444 -128775714 - L1M4 LINE L1 -678 5496 5333 1006 273 126 29 chr3 89261447 89261868 -128775290 + L1ME1 LINE L1 5652 6113 -53 1086 212 0 26 chr3 89261940 89262166 -128774992 + AluJo SINE Alu 1 220 -92 365 130 0 0 chr3 89262166 89262220 -128774938 + AluSg/x SINE Alu 84 137 -163 1220 137 11 0 chr3 89263098 89263273 -128773885 + AluSg/x SINE Alu 128 304 -6 881 169 0 20 chr3 89263277 89263425 -128773733 + FRAM SINE Alu 2 146 -30 674 63 21 0 chr3 89263427 89263522 -128773636 + (CATA)n Simple_repeat Simple_repeat 2 98 0 2626 157 13 20 chr3 89263817 89264270 -128772888 - L1MA7 LINE L1 -227 6064 5615 1059 153 88 0 chr3 89264270 89264481 -128772677 + L1MA7 LINE L1 6051 6285 -6 264 59 0 0 chr3 89265348 89265382 -128771776 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 218 227 0 171 chr3 89265466 89265554 -128771604 - L2 LINE L2 -27 3245 3173 3560 189 23 82 chr3 89266430 89267459 -128769699 - LTR5 LTR ERVK 0 969 1 1057 180 0 0 chr3 89267461 89267639 -128769519 - HERVK LTR ERVK -2 7241 7064 214 200 0 42 chr3 89267780 89267875 -128769283 + CT-rich Low_complexity Low_complexity 2 92 0 2594 109 13 3 chr3 89267972 89268349 -128768809 - HERVK LTR ERVK -1707 5536 5156 1054 126 29 0 chr3 89268749 89268923 -128768235 - L1MA4 LINE L1 -12 6288 6110 5703 158 26 13 chr3 89268931 89270079 -128767079 + L1PB1 LINE L1 4295 5472 -679 2311 117 0 0 chr3 89270079 89270387 -128766771 + AluSg SINE Alu 1 308 -2 5703 158 26 13 chr3 89270387 89271076 -128766082 + L1PB1 LINE L1 5472 6151 0 829 156 111 8 chr3 89271081 89271291 -128765867 - L1MA4 LINE L1 -175 6125 5899 3472 143 12 32 chr3 89271350 89272164 -128764994 - L1MA4A LINE L1 -373 5927 4961 14106 202 29 33 chr3 89272167 89272612 -128764546 - L1 LINE L1 -940 5908 5463 204 40 0 0 chr3 89272612 89272637 -128764521 + (TA)n Simple_repeat Simple_repeat 2 26 0 243 0 0 0 chr3 89272637 89272664 -128764494 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2304 78 7 10 chr3 89272666 89272962 -128764196 - AluY SINE Alu -16 295 1 14106 202 29 33 chr3 89272962 89273457 -128763701 - L1 LINE L1 -1385 5463 4967 2118 134 13 0 chr3 89273457 89273755 -128763403 - AluSx SINE Alu -10 302 1 14106 202 29 33 chr3 89273755 89275958 -128761200 - L1 LINE L1 -1881 4967 2756 2047 158 48 20 chr3 89275958 89276312 -128760846 + THE1B LTR MaLR 1 364 0 10739 120 16 11 chr3 89276312 89277884 -128759274 + THE1B-int LTR MaLR 1 1580 0 2131 134 48 31 chr3 89277884 89278242 -128758916 + THE1B LTR MaLR 1 364 0 14106 202 29 33 chr3 89278242 89278494 -128758664 - L1 LINE L1 -4090 2758 2506 926 195 6 0 chr3 89278494 89278653 -128758505 - FRAM SINE Alu -6 160 1 14106 202 29 33 chr3 89278653 89279700 -128757458 - L1 LINE L1 -4342 2506 1470 2103 108 3 50 chr3 89279700 89280023 -128757135 - AluSg SINE Alu 0 310 3 14106 202 29 33 chr3 89280023 89280437 -128756721 - L1 LINE L1 -5378 1470 1056 230 320 13 0 chr3 89280564 89280639 -128756519 - MLT1L LTR MaLR -392 223 148 868 275 9 0 chr3 89280654 89280872 -128756286 - MER58A DNA MER1_type -1 223 4 1589 200 24 3 chr3 89280989 89281284 -128755874 + AluJo SINE Alu 1 301 -11 369 224 53 0 chr3 89281486 89281562 -128755596 - MLT1H LTR MaLR -16 533 454 * 576 266 104 57 chr3 89281560 89281857 -128755301 - MLT1H LTR MaLR -198 351 41 2049 131 3 3 chr3 89282812 89283109 -128754049 + AluSc SINE Alu 1 297 -12 693 232 56 26 chr3 89283370 89283603 -128753555 + Charlie5 DNA MER1_type 2331 2570 -42 1986 189 24 0 chr3 89283771 89284147 -128753011 + L1MB7 LINE L1 5575 5959 -219 1225 98 75 0 chr3 89284147 89284320 -128752838 + AluSg/x SINE Alu 102 287 -23 902 223 35 0 chr3 89284325 89284527 -128752631 + L1MB7 LINE L1 5976 6184 0 257 328 44 64 chr3 89284529 89284676 -128752482 - L2 LINE L2 -265 3048 2907 2196 134 0 0 chr3 89284676 89284981 -128752177 - AluSq SINE Alu -8 305 1 257 328 44 64 chr3 89284981 89285083 -128752075 - L2 LINE L2 -406 2907 2804 203 278 0 0 chr3 89285124 89285178 -128751980 + MIR SINE MIR 88 141 -121 2204 99 0 0 chr3 89285239 89285563 -128751595 - AluY SINE Alu 0 324 1 1482 163 0 5 chr3 89285680 89285901 -128751257 + AluSx SINE Alu 1 220 -92 262 114 0 0 chr3 89286098 89286142 -128751016 - MER5B DNA MER1_type 0 178 135 572 188 193 34 chr3 89286157 89286333 -128750825 - L1MB5 LINE L1 -297 5887 5684 * 1231 170 25 57 chr3 89286303 89286585 -128750573 + L1MB5 LINE L1 5902 6174 0 2134 148 0 0 chr3 89286590 89286901 -128750257 + AluSx SINE Alu 2 312 0 564 198 8 24 chr3 89286915 89287041 -128750117 - MER5B DNA MER1_type -50 128 5 218 314 32 24 chr3 89287127 89287251 -128749907 + MER5A DNA MER1_type 2 126 -63 1888 159 17 0 chr3 89287399 89287688 -128749470 + AluSx SINE Alu 1 294 -18 2056 167 142 20 chr3 89287972 89288422 -128748736 - MLT1E LTR MaLR 0 593 89 7953 38 6 2 chr3 89288422 89289391 -128747767 - L1P LINE L1 -896 5250 4278 474 119 8 151 chr3 89289421 89289547 -128747611 + LTR2B LTR ERV1 275 382 -108 1237 114 0 34 chr3 89289548 89289724 -128747434 - AluSc SINE Alu -139 170 1 1692 213 178 47 chr3 89289854 89290432 -128746726 + MLT1E1 LTR MaLR 1 654 0 2215 115 0 3 chr3 89290443 89290738 -128746420 + AluSc SINE Alu 1 294 -15 205 349 38 9 chr3 89290827 89290933 -128746225 - MIR3 SINE MIR -54 154 46 2158 130 0 0 chr3 89291106 89291398 -128745760 + AluSc SINE Alu 1 292 -17 331 331 6 43 chr3 89291461 89291624 -128745534 - MIR SINE MIR -105 157 1 2098 141 0 0 chr3 89291675 89291974 -128745184 + AluSx SINE Alu 1 299 -13 843 245 43 77 chr3 89292143 89292399 -128744759 + MLT1I LTR MaLR 87 331 -78 1816 169 30 3 chr3 89292399 89292694 -128744464 + AluSx SINE Alu 1 303 -9 843 245 43 77 chr3 89292694 89292764 -128744394 + MLT1I LTR MaLR 331 402 -7 413 302 7 22 chr3 89293097 89293236 -128743922 - L2 LINE L2 0 3272 3136 4090 61 42 50 chr3 89293263 89294334 -128742824 - MER11A LTR ERVK 0 1266 1 766 310 91 44 chr3 89294389 89295043 -128742115 - L2 LINE L2 -218 3054 2346 1514 156 0 94 chr3 89295043 89295363 -128741795 - AluJo SINE Alu -22 290 1 766 310 91 44 chr3 89295363 89295597 -128741561 - L2 LINE L2 -926 2346 2125 181 370 20 34 chr3 89296258 89296404 -128740754 + L3 LINE CR1 1053 1196 -381 935 119 8 0 chr3 89296428 89296554 -128740604 + AluSq/x SINE Alu 9 135 -177 2202 126 10 3 chr3 89296554 89296864 -128740294 + AluSq SINE Alu 1 312 -1 1078 190 5 46 chr3 89296904 89297020 -128740138 + MER58A DNA MER1_type 1 105 -2315 2465 141 78 0 chr3 89297020 89297417 -128739741 - MSTA LTR MaLR 0 428 1 1078 190 5 46 chr3 89297417 89297516 -128739642 + MER58A DNA MER1_type 105 207 -17 200 100 50 25 chr3 89297538 89297578 -128739580 + GA-rich Low_complexity Low_complexity 3 43 0 220 301 96 7 chr3 89297582 89297718 -128739440 + L3 LINE CR1 1230 1377 -200 4115 91 14 4 chr3 89297725 89298277 -128738881 + LTR6B LTR ERV1 1 558 0 21512 128 23 18 chr3 89298279 89301495 -128735663 + HERVS71 LTR ERV1 4 3236 -5742 6308 133 18 0 chr3 89301504 89303143 -128734015 + HERVS71 LTR ERV1 4870 6603 -2375 * 6719 145 2 0 chr3 89303140 89304122 -128733036 + HERVS71 LTR ERV1 6803 7786 -1192 2245 117 0 3 chr3 89304119 89304436 -128732722 + HERVS71 LTR ERV1 8594 8909 -69 * 3867 52 2 6 chr3 89304436 89304916 -128732242 + LTR6B LTR ERV1 1 478 -80 555 115 0 0 chr3 89305020 89305098 -128732060 + LTR6B LTR ERV1 481 558 0 2325 101 3 0 chr3 89305354 89305651 -128731507 - AluSp SINE Alu -13 300 3 330 256 199 24 chr3 89306272 89306483 -128730675 - MLT1H LTR MaLR 0 595 348 1833 103 174 92 chr3 89306639 89307007 -128730151 - MER4A LTR ERV1 -6 658 261 433 121 0 15 chr3 89307007 89307073 -128730085 - MER4A LTR ERV1 -566 98 34 1888 103 11 26 chr3 89307074 89307345 -128729813 - AluSx SINE Alu -17 295 29 611 65 0 0 chr3 89307345 89307422 -128729736 - AluS SINE Alu -234 78 2 280 139 0 0 chr3 89307423 89307466 -128729692 - MER4A LTR ERV1 -620 44 2 438 244 66 12 chr3 89307466 89307634 -128729524 - MLT1H LTR MaLR -356 193 12 315 0 0 0 chr3 89307634 89307669 -128729489 + (CA)n Simple_repeat Simple_repeat 1 35 0 461 45 0 0 chr3 89307864 89307931 -128729227 + L1HS LINE L1 6089 6155 0 1229 75 0 0 chr3 89308039 89308185 -128728973 - AluSg SINE Alu -15 297 152 863 58 10 0 chr3 89308186 89308289 -128728869 - AluSg SINE Alu -197 113 10 347 283 48 73 chr3 89308489 89308761 -128728397 + MLT1K LTR MaLR 180 444 -144 2049 132 6 10 chr3 89308906 89309217 -128727941 + AluSg SINE Alu 1 310 0 1116 296 23 0 chr3 89309222 89309526 -128727632 + LTR16C LTR ERVL 164 474 -17 234 205 64 39 chr3 89309545 89309623 -128727535 + MLT1K LTR MaLR 508 587 -1 2176 118 20 0 chr3 89310045 89310349 -128726809 + AluSx SINE Alu 1 310 -2 642 223 54 24 chr3 89311115 89311281 -128725877 - MLT1I LTR MaLR -7 402 232 254 268 125 27 chr3 89311533 89311645 -128725513 - MIR SINE MIR -137 125 3 322 244 8 59 chr3 89312030 89312149 -128725009 - MER58C DNA MER1_type 0 215 103 1382 205 36 44 chr3 89312160 89312521 -128724637 + L1MB5 LINE L1 5813 6170 -4 1342 191 29 18 chr3 89312534 89312812 -128724346 - AluJo SINE Alu -30 282 2 1905 120 3 42 chr3 89312981 89313290 -128723868 - AluJb SINE Alu -11 301 5 2165 112 0 0 chr3 89313451 89313745 -128723413 - AluSx SINE Alu -18 294 1 583 208 39 0 chr3 89313752 89313882 -128723276 - L1MB4 LINE L1 0 6180 6046 1200 191 25 39 chr3 89314395 89314677 -128722481 - AluJo SINE Alu -34 278 1 1893 156 0 6 chr3 89314702 89315016 -128722142 + AluSx SINE Alu 1 312 0 403 328 65 13 chr3 89315090 89315322 -128721836 + L2 LINE L2 2710 2953 -361 284 261 102 9 chr3 89315475 89315604 -128721554 - L2 LINE L2 -247 3066 2916 43066 58 3 4 chr3 89315711 89321873 -128715285 + L1PA5 LINE L1 1 6154 0 2111 130 0 0 chr3 89322293 89322594 -128714564 + AluSx SINE Alu 1 301 -11 1147 206 28 16 chr3 89322637 89322884 -128714274 - MLT1E1 LTR MaLR 0 654 405 2122 106 0 0 chr3 89322904 89323211 -128713947 + AluSx SINE Alu 1 307 0 1029 191 98 8 chr3 89323241 89323487 -128713671 - MLT1E1 LTR MaLR -384 270 3 2348 76 7 0 chr3 89323773 89324077 -128713081 + AluY SINE Alu 1 306 -5 1571 206 42 65 chr3 89324081 89324465 -128712693 - MLT1C LTR MaLR 0 467 95 2306 97 3 0 chr3 89324465 89324775 -128712383 - AluSp SINE Alu -2 311 1 1571 206 42 65 chr3 89324775 89324866 -128712292 - MLT1C LTR MaLR -372 95 3 357 252 40 6 chr3 89324878 89324966 -128712192 + AluJ/FLAM SINE Alu 1 75 -227 1392 180 31 41 chr3 89324990 89325284 -128711874 + AluJo SINE Alu 6 296 -16 236 226 0 32 chr3 89325466 89325528 -128711630 - MLT1K LTR MaLR -111 477 418 249 284 119 60 chr3 89325565 89325783 -128711375 - MLT1K LTR MaLR -325 263 33 398 269 92 31 chr3 89326575 89326705 -128710453 - MER91C DNA MER1_type 0 140 3 1232 157 5 22 chr3 89326843 89327066 -128710092 - MER20 DNA MER1_type 0 219 1 1650 174 0 30 chr3 89327466 89327770 -128709388 + AluJo SINE Alu 12 306 -6 1988 122 14 0 chr3 89327774 89328069 -128709089 + AluY SINE Alu 1 299 -12 338 310 30 60 chr3 89328172 89328372 -128708786 - L1MC5 LINE L1 -105 7856 7663 434 294 144 0 chr3 89328447 89328600 -128708558 - MER5A DNA MER1_type 0 189 15 643 228 177 11 chr3 89328797 89328862 -128708296 - MLT1D LTR MaLR 0 484 431 1825 157 3 7 chr3 89328862 89329167 -128707991 + AluSx SINE Alu 1 304 -8 643 228 177 11 chr3 89329167 89329339 -128707819 - MLT1D LTR MaLR -53 431 206 1946 92 36 8 chr3 89329381 89329730 -128707428 + LTR7 LTR ERV1 1 448 -2 3158 84 5 9 chr3 89329732 89330170 -128706988 + HERVH LTR ERV1 1 436 -7277 5039 95 11 3 chr3 89330271 89330979 -128706179 + HERVH LTR ERV1 3280 3993 -3720 4346 145 1 5 chr3 89330981 89331642 -128705516 + HERVH LTR ERV1 4488 5146 -2567 1315 123 42 5 chr3 89331646 89331858 -128705300 + HERVH LTR ERV1 5600 5819 -1894 2335 106 48 16 chr3 89331858 89332236 -128704922 + HERVH LTR ERV1 7324 7713 0 2483 88 131 8 chr3 89332237 89332635 -128704523 + LTR7 LTR ERV1 2 448 -2 2204 100 3 0 chr3 89332647 89332948 -128704210 - AluSp SINE Alu -9 304 3 602 221 55 33 chr3 89332958 89333139 -128704019 - MLT1D LTR MaLR -320 185 1 288 339 25 17 chr3 89334322 89334440 -128702718 - L2 LINE L2 -15 3298 3180 1804 138 6 60 chr3 89334478 89334796 -128702362 + AluSx SINE Alu 1 301 -11 222 37 0 0 chr3 89335081 89335108 -128702050 + (CAT)n Simple_repeat Simple_repeat 3 29 0 753 152 80 8 chr3 89335218 89335343 -128701815 + THE1B LTR MaLR 196 329 -35 199 176 0 0 chr3 89335617 89335651 -128701507 + L2 LINE L2 3019 3052 -261 2271 91 0 3 chr3 89335892 89336199 -128700959 - AluY SINE Alu -4 307 2 450 94 0 0 chr3 89336322 89336386 -128700772 + (GA)n Simple_repeat Simple_repeat 1 64 0 2004 131 3 0 chr3 89336702 89336993 -128700165 - AluSg SINE Alu -18 292 1 1168 167 14 28 chr3 89337058 89337274 -128699884 + MER73 LTR ERVL 432 644 0 196 255 0 0 chr3 89337759 89337810 -128699348 - MER5B DNA MER1_type -81 97 47 932 144 0 0 chr3 89337816 89337948 -128699210 + FLAM_A SINE Alu 1 132 -1 254 200 19 45 chr3 89338005 89338071 -128699087 + MLT1F LTR MaLR 1 55 -487 * 401 216 0 0 chr3 89338070 89338144 -128699014 - MER66B LTR ERV1 -412 74 1 859 146 0 8 chr3 89338505 89338635 -128698523 + FLAM_C SINE Alu 1 129 -4 232 24 49 24 chr3 89338807 89338848 -128698310 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 1537 161 29 4 chr3 89338848 89339121 -128698037 - AluSx SINE Alu -32 280 1 427 246 20 99 chr3 89339844 89339968 -128697190 + MER5B DNA MER1_type 3 140 -49 1792 177 0 0 chr3 89339968 89340279 -128696879 - AluJo SINE Alu -1 311 1 427 246 20 99 chr3 89340279 89340326 -128696832 + MER5B DNA MER1_type 140 189 0 357 252 28 22 chr3 89340340 89340489 -128696669 - MER5A DNA MER1_type 0 178 30 211 260 65 65 chr3 89340386 89340509 -128696649 + MER5A DNA MER1_type 60 182 -7 * 1303 222 108 35 chr3 89340897 89340973 -128696185 + MLT1C LTR MaLR 6 75 -392 1938 144 3 0 chr3 89340973 89341265 -128695893 + AluSx SINE Alu 5 297 -15 1303 222 108 35 chr3 89341265 89341616 -128695542 + MLT1C LTR MaLR 75 464 -3 2108 120 0 0 chr3 89341657 89341948 -128695210 + AluSp SINE Alu 1 291 -22 1971 113 6 44 chr3 89342173 89342492 -128694666 + AluSq SINE Alu 1 307 -6 262 246 18 0 chr3 89342673 89342730 -128694428 + AluJo SINE Alu 1 58 -244 3830 126 105 50 chr3 89342762 89343208 -128693950 + LTR1 LTR ERV1 1 506 -279 1864 57 0 4 chr3 89343208 89343438 -128693720 + AluY SINE Alu 16 244 -67 3830 126 105 50 chr3 89343438 89343735 -128693423 + LTR1 LTR ERV1 506 785 0 1375 144 0 88 chr3 89343738 89344022 -128693136 + AluJo SINE Alu 41 299 -13 1807 137 3 16 chr3 89344573 89344879 -128692279 + AluSx SINE Alu 1 302 -10 333 47 0 0 chr3 89344888 89344931 -128692227 + (CA)n Simple_repeat Simple_repeat 2 44 0 1746 193 0 0 chr3 89345048 89345359 -128691799 - AluJo SINE Alu -1 311 1 495 279 82 13 chr3 89345883 89346041 -128691117 + MIR SINE MIR 79 247 -15 362 272 76 0 chr3 89346070 89346162 -128690996 + L2 LINE L2 3162 3260 -12 487 302 24 17 chr3 89346553 89346732 -128690426 + MIR SINE MIR 42 224 -38 2253 102 0 0 chr3 89346747 89347052 -128690106 + AluSq SINE Alu 1 305 -8 3244 127 68 6 chr3 89347140 89347636 -128689522 + MER1A DNA MER1_type 1 527 0 778 186 9 91 chr3 89347656 89347807 -128689351 + MER3 DNA MER1_type 8 137 -72 2028 129 3 0 chr3 89347807 89348102 -128689056 - AluSx SINE Alu -16 296 1 778 186 9 91 chr3 89348102 89348170 -128688988 + MER3 DNA MER1_type 137 209 0 765 265 94 8 chr3 89348319 89348553 -128688605 - MIR SINE MIR -6 256 3 2028 241 32 14 chr3 89350122 89350628 -128686530 + MER65A-int LTR ERV1 4357 4871 0 1779 150 34 25 chr3 89350629 89350949 -128686209 + MER65A LTR ERV1 2 324 -121 2295 151 32 39 chr3 89350949 89351136 -128686022 + MSTB LTR MaLR 3 190 -236 1932 142 6 3 chr3 89351136 89351447 -128685711 + AluSx SINE Alu 1 312 0 2295 151 32 39 chr3 89351447 89351669 -128685489 + MSTB LTR MaLR 190 409 -17 10393 64 0 14 chr3 89351670 89352971 -128684187 - L1P LINE L1 -4862 1284 2 4399 318 52 39 chr3 89352976 89355151 -128682007 - PRIMA41-int LTR ERV1 -4279 3477 1274 723 295 6 0 chr3 89356138 89356311 -128680847 - MER41D LTR ERV1 0 557 384 1634 185 7 0 chr3 89356921 89357229 -128679929 - AluSx SINE Alu -2 310 1 748 162 103 0 chr3 89357550 89357686 -128679472 + MER4B LTR ERV1 1 150 -460 5655 190 24 7 chr3 89357713 89358723 -128678435 - L1MA2 LINE L1 -2 6302 5311 2000 147 39 58 chr3 89358723 89358778 -128678380 - THE1C LTR MaLR 0 375 321 1919 87 3 74 chr3 89358778 89359088 -128678070 - AluSg1 SINE Alu -20 289 2 2000 147 39 58 chr3 89359088 89359414 -128677744 - THE1C LTR MaLR -54 321 1 5655 190 24 7 chr3 89359414 89360072 -128677086 - L1MA2 LINE L1 -993 5311 4593 2061 109 3 7 chr3 89360072 89360366 -128676792 - AluSg SINE Alu -17 293 1 5655 190 24 7 chr3 89360366 89360718 -128676440 - L1MA2 LINE L1 -1711 4593 4249 1771 206 64 12 chr3 89360718 89361125 -128676033 - MSTA LTR MaLR 0 428 1 8074 209 27 19 chr3 89361125 89362763 -128674395 - MSTA-int LTR MaLR 0 1651 2 2154 205 33 12 chr3 89362764 89363183 -128673975 - MSTA LTR MaLR 0 428 1 15289 234 65 21 chr3 89363185 89363561 -128673597 - L1M4 LINE L1 -1895 5670 5312 2200 137 0 0 chr3 89363561 89363868 -128673290 - AluSx SINE Alu -5 307 1 15289 234 65 21 chr3 89363868 89368901 -128668257 - L1M4 LINE L1 -2253 5312 17 672 125 0 19 chr3 89368912 89369016 -128668142 - L1PA16 LINE L1 -21 6145 6044 3800 172 26 9 chr3 89369021 89369702 -128667456 - L1PA16 LINE L1 -84 6082 5390 281 168 21 61 chr3 89369696 89369764 -128667394 + L1PA16 LINE L1 5290 5359 -807 * 2462 76 0 0 chr3 89369764 89370067 -128667091 + AluY SINE Alu 1 303 -8 281 168 21 61 chr3 89370067 89370080 -128667078 + L1PB4 LINE L1 5359 5371 -795 641 262 128 86 chr3 89370875 89371280 -128665878 + MLT1H1 LTR MaLR 1 447 -120 23 92 0 0 chr3 89371314 89371379 -128665779 + AT_rich Low_complexity Low_complexity 1 65 0 259 200 0 0 chr3 89371382 89371427 -128665731 + MLT1H1 LTR MaLR 546 590 0 198 336 161 15 chr3 89372182 89372319 -128664839 + L2 LINE L2 3115 3271 -1 263 236 167 0 chr3 89372403 89372475 -128664683 - L2 LINE L2 0 3313 3230 2420 174 111 32 chr3 89373181 89373704 -128663454 - LTR6A LTR ERV1 0 564 1 332 179 64 13 chr3 89373917 89373995 -128663163 - L2 LINE L2 0 3272 3191 2771 195 23 0 chr3 89374270 89374792 -128662366 + L1PB4 LINE L1 5620 6153 -3 275 230 23 11 chr3 89375920 89376007 -128661151 - L2 LINE L2 -1231 2083 1996 329 250 0 0 chr3 89376068 89376148 -128661010 - MER103 DNA DNA -75 91 12 210 147 0 0 chr3 89376154 89376188 -128660970 + (TG)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr3 89376773 89376794 -128660364 + AT_rich Low_complexity Low_complexity 1 21 0 11340 194 25 5 chr3 89377105 89379379 -128657779 + L1PB1 LINE L1 3016 5334 -812 3549 212 9 5 chr3 89379374 89380170 -128656988 - L1PB1 LINE L1 -796 5350 4552 * 5445 109 19 4 chr3 89380168 89380969 -128656189 + L1PB1 LINE L1 5339 6151 0 2576 120 113 5 chr3 89380972 89381398 -128655760 + L1P4 LINE L1 5315 5786 -375 2788 111 65 5 chr3 89381398 89381811 -128655347 + LTR66 LTR ERVL 1 438 -172 257 238 71 0 chr3 89381820 89381904 -128655254 + L1MC4 LINE L1 6614 6703 -1339 * 262 250 0 43 chr3 89381860 89381952 -128655206 - L1MC4 LINE L1 -1341 6701 6614 245 221 15 0 chr3 89381911 89381979 -128655179 + L1MCa LINE L1 1996 2064 -4362 * 1348 155 0 0 chr3 89382106 89382313 -128654845 + AluSg/x SINE Alu 106 312 0 272 252 174 3 chr3 89382665 89382779 -128654379 + MIR SINE MIR 31 161 -47 1857 161 20 10 chr3 89383223 89383527 -128653631 - AluJb SINE Alu -5 307 1 283 214 138 84 chr3 89383533 89383808 -128653350 - L1MC5 LINE L1 -30 7931 7642 1678 130 16 8 chr3 89383808 89384054 -128653104 + AluSc SINE Alu 44 291 -18 250 286 68 54 chr3 89384362 89384509 -128652649 - MER5B DNA MER1_type -13 165 17 2051 133 7 17 chr3 89385061 89385363 -128651795 + AluSx SINE Alu 1 299 -13 3120 215 21 82 chr3 89385580 89386611 -128650547 - LTR5 LTR ERVK 0 969 1 34001 163 9 16 chr3 89386611 89394201 -128642957 - HERVK LTR ERVK 0 7243 1 328 186 0 14 chr3 89394201 89394271 -128642887 - LTR5 LTR ERVK 0 969 901 277 244 49 0 chr3 89394550 89394632 -128642526 - L2 LINE L2 -220 3052 2967 1353 196 33 128 chr3 89394647 89395102 -128642056 + MLT2B1 LTR ERVL 3 414 0 186 103 0 0 chr3 89395485 89395514 -128641644 + (TGG)n Simple_repeat Simple_repeat 2 30 0 559 114 0 0 chr3 89395682 89395761 -128641397 + MADE1 DNA Mariner 2 80 0 615 358 17 13 chr3 89397115 89397417 -128639741 + MLT1I LTR MaLR 104 406 -3 414 0 0 0 chr3 89397429 89397475 -128639683 + (TG)n Simple_repeat Simple_repeat 1 46 0 8741 56 21 0 chr3 89398791 89399908 -128637250 - L1P LINE L1 -819 5327 4188 8239 71 5 2 chr3 89399907 89400992 -128636166 + L1P LINE L1 3121 4208 -1938 * 805 101 7 0 chr3 89400992 89405646 -128631512 + CER Satellite Satellite 1 4686 0 6325 64 0 10 chr3 89405749 89406520 -128630638 + L1PA5 LINE L1 5386 6148 -6 1648 212 71 14 chr3 89406561 89406995 -128630163 + L1MA8 LINE L1 5769 6227 -64 685 129 0 0 chr3 89406996 89407154 -128630004 + CER Satellite Satellite 1 158 -4 29 28 0 0 chr3 89407187 89407223 -128629935 + AT_rich Low_complexity Low_complexity 1 36 0 693 97 37 0 chr3 89407246 89407411 -128629747 - CER Satellite Satellite -3 171 1 2132 257 20 28 chr3 89407417 89408027 -128629131 - L1MCa LINE L1 -5752 674 70 229 234 16 16 chr3 89408198 89408262 -128628896 - L1M4 LINE L1 -2278 3868 3805 384 337 98 28 chr3 89408270 89408555 -128628603 + L2 LINE L2 2065 2369 -945 1004 200 34 0 chr3 89408994 89409199 -128627959 - MER2 DNA MER2_type -3 342 131 465 221 48 0 chr3 89409200 89409304 -128627854 - Tigger3(Golem) DNA MER2_type 0 3029 2921 390 275 0 0 chr3 89409417 89409497 -128627661 - Tigger3(Golem) DNA MER2_type -2949 80 1 * 593 216 16 8 chr3 89409497 89409621 -128627537 - MER2 DNA MER2_type -214 131 7 1067 157 39 25 chr3 89410052 89410256 -128626902 - AluJo SINE Alu -4 308 102 1282 210 4 12 chr3 89411543 89411795 -128625363 - AluJo SINE Alu -7 305 56 889 232 0 28 chr3 89411814 89411991 -128625167 + AluJo SINE Alu 120 291 -21 207 295 38 19 chr3 89411995 89412100 -128625058 - L2 LINE L2 -1210 2104 1998 351 100 17 17 chr3 89415635 89415695 -128621463 - Tigger1 DNA MER2_type -1167 1251 1192 * 4216 195 42 5 chr3 89415693 89416541 -128620617 - Tigger1 DNA MER2_type -1537 881 2 648 194 108 5 chr3 89416554 89416740 -128620418 - L1MCa LINE L1 -3950 2476 2272 1149 164 63 89 chr3 89416742 89417011 -128620147 - AluJo SINE Alu -5 307 46 6657 199 58 44 chr3 89417035 89417275 -128619883 - L1MCa LINE L1 -4175 2251 2016 2135 114 7 13 chr3 89417275 89417582 -128619576 + AluY SINE Alu 1 305 -6 207 0 0 0 chr3 89417582 89417605 -128619553 + (TA)n Simple_repeat Simple_repeat 1 23 0 6657 199 58 44 chr3 89417605 89417666 -128619492 - L1MCa LINE L1 -4410 2016 1957 2301 106 3 13 chr3 89417666 89417977 -128619181 + AluY SINE Alu 1 308 -3 6657 199 58 44 chr3 89417977 89418032 -128619126 - L1MCa LINE L1 -4469 1957 1904 2202 114 0 7 chr3 89418032 89418340 -128618818 + AluSg1 SINE Alu 1 306 -3 6657 199 58 44 chr3 89418340 89418600 -128618558 - L1MCa LINE L1 -4522 1904 1649 2277 115 0 3 chr3 89418600 89418904 -128618254 - AluY SINE Alu -8 303 1 6657 199 58 44 chr3 89418904 89419658 -128617500 - L1MCa LINE L1 -4777 1649 907 1104 244 93 32 chr3 89419658 89420002 -128617156 - MLT1A1 LTR MaLR 0 365 1 6657 199 58 44 chr3 89420002 89420642 -128616516 - L1MCa LINE L1 -5519 907 277 908 117 0 8 chr3 89420642 89420770 -128616388 - FLAM_C SINE Alu -6 127 1 6657 199 58 44 chr3 89420770 89420814 -128616344 - L1MCa LINE L1 -6149 277 235 1962 128 6 67 chr3 89420814 89421006 -128616152 - AluSq SINE Alu -4 309 144 1912 160 3 7 chr3 89421006 89421306 -128615852 - AluSx SINE Alu -13 299 1 1962 128 6 67 chr3 89421306 89421442 -128615716 - AluSq SINE Alu -169 144 1 6657 199 58 44 chr3 89421442 89421507 -128615651 - L1MCa LINE L1 -6191 235 2 455 297 44 28 chr3 89421703 89421885 -128615273 + L2 LINE L2 2171 2355 -959 676 214 96 6 chr3 89422336 89422513 -128614645 - MER2 DNA MER2_type 0 345 153 1636 141 21 102 chr3 89422513 89422763 -128614395 + MER4A LTR ERV1 1 211 -453 2339 112 3 0 chr3 89422763 89423067 -128614091 - AluSp SINE Alu -8 305 1 1636 141 21 102 chr3 89423067 89423200 -128613958 + MER4A LTR ERV1 211 353 -311 452 118 21 65 chr3 89423227 89423320 -128613838 + MER4A LTR ERV1 265 353 -311 470 101 11 67 chr3 89423347 89423436 -128613722 + MER4A LTR ERV1 265 348 -316 464 108 21 65 chr3 89423468 89423561 -128613597 + MER4A LTR ERV1 265 353 -311 1846 144 72 33 chr3 89423573 89423934 -128613224 - THE1C LTR MaLR 0 375 1 514 163 191 21 chr3 89423992 89424133 -128613025 + MER4C LTR ERV1 300 464 -1 526 229 9 0 chr3 89424161 89424270 -128612888 - Tigger3(Golem) DNA MER2_type -1 3028 2919 3848 136 95 30 chr3 89424383 89425397 -128611761 - MER11A LTR ERVK 0 1266 3 342 253 0 13 chr3 89425415 89425490 -128611668 - Tigger3(Golem) DNA MER2_type -2955 74 1 * 669 197 47 8 chr3 89425490 89425616 -128611542 - MER2 DNA MER2_type -214 131 1 1062 160 0 0 chr3 89425904 89426060 -128611098 - AluJb SINE Alu -156 156 1 2245 120 73 9 chr3 89426521 89426862 -128610296 + THE1B LTR MaLR 1 363 -1 1033 202 67 57 chr3 89427527 89427858 -128609300 + Charlie1a DNA MER1_type 51 384 -1071 1445 169 110 18 chr3 89427886 89428020 -128609138 + AluJb SINE Alu 5 125 -187 6736 112 22 10 chr3 89428020 89429015 -128608143 - LTR13 LTR ERVK 0 1007 1 1445 169 110 18 chr3 89429015 89429152 -128608006 + AluJb SINE Alu 125 301 -11 2031 206 98 36 chr3 89429152 89429577 -128607581 + Charlie1a DNA MER1_type 568 966 -1795 2184 91 39 0 chr3 89429577 89429863 -128607295 - AluSx SINE Alu -10 302 6 2031 206 98 36 chr3 89429863 89430134 -128607024 + Charlie1a DNA MER1_type 966 1318 -1443 2139 93 0 47 chr3 89430134 89430434 -128606724 - AluSc SINE Alu -22 287 2 2031 206 98 36 chr3 89430434 89430505 -128606653 + Charlie1a DNA MER1_type 1318 1383 -72 21 0 0 0 chr3 89430794 89430815 -128606343 + AT_rich Low_complexity Low_complexity 1 21 0 1943 128 4 4 chr3 89430820 89431101 -128606057 + AluSx SINE Alu 1 281 -31 186 43 0 0 chr3 89431104 89431127 -128606031 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 27 92 0 0 chr3 89431272 89431348 -128605810 + AT_rich Low_complexity Low_complexity 1 76 0 772 174 0 23 chr3 89431565 89431697 -128605461 - FLAM_C SINE Alu 0 133 5 3760 143 48 9 chr3 89431750 89432400 -128604758 - L1PA16 LINE L1 0 6166 5492 302 0 0 26 chr3 89432402 89432441 -128604717 + (TTA)n Simple_repeat Simple_repeat 2 39 0 2110 118 0 7 chr3 89432441 89432728 -128604430 - AluSq SINE Alu -28 285 1 1667 176 35 3 chr3 89433101 89433391 -128603767 - AluJb SINE Alu -13 299 1 2035 141 21 9 chr3 89433510 89433843 -128603315 + MER1B DNA MER1_type 1 337 0 998 271 23 30 chr3 89434200 89434502 -128602656 + LTR16C LTR ERVL 191 490 -1 274 292 22 0 chr3 89434927 89435016 -128602142 + MARNA DNA Mariner 276 366 -220 357 239 41 66 chr3 89435850 89436161 -128600997 + LTR23-int LTR ERV1 134 484 -4387 1810 113 3 46 chr3 89436162 89436445 -128600713 + AluSc SINE Alu 39 309 0 741 143 74 101 chr3 89436469 89436658 -128600500 + LTR57-int LTR ERVL 310 493 -4850 * 3756 176 96 70 chr3 89436591 89437758 -128599400 + LTR23-int LTR ERV1 882 2078 -2793 7131 72 55 9 chr3 89437770 89438733 -128598425 + LTR13 LTR ERVK 1 1007 0 452 151 46 59 chr3 89438816 89438952 -128598206 + LTR23-int LTR ERV1 1584 2060 -5756 251 94 0 0 chr3 89439083 89439115 -128598043 + L1PA14 LINE L1 5782 5813 -342 1739 77 0 32 chr3 89439116 89439362 -128597796 + L1PA14 LINE L1 5912 6149 -12 385 274 0 9 chr3 89439508 89439614 -128597544 + LTR23-int LTR ERV1 3236 3340 -2991 405 198 0 35 chr3 89439684 89439770 -128597388 + LTR23-int LTR ERV1 3364 3446 -2885 393 225 50 64 chr3 89439868 89440192 -128596966 + LTR23-int LTR ERV1 1710 2093 -3000 2041 121 0 0 chr3 89440251 89440524 -128596634 - AluSx SINE Alu -18 294 22 24 0 0 0 chr3 89440575 89440599 -128596559 + AT_rich Low_complexity Low_complexity 1 24 0 3200 149 62 2 chr3 89440798 89441343 -128595815 + LTR23-int LTR ERV1 4985 5562 -1975 15943 188 33 32 chr3 89441359 89444589 -128592569 + L1M1 LINE L1 24 3254 -4311 753 186 0 8 chr3 89445303 89445556 -128591602 + CT-rich Low_complexity Low_complexity 1 250 0 202 306 18 0 chr3 89445586 89445697 -128591461 + (TG)n Simple_repeat Simple_repeat 2 114 0 191 209 0 47 chr3 89446527 89446613 -128590545 + CT-rich Low_complexity Low_complexity 1 82 0 378 324 13 7 chr3 89446697 89446999 -128590159 + LSAU Satellite Satellite 1 304 0 21 36 0 0 chr3 89447140 89447168 -128589990 + GC_rich Low_complexity Low_complexity 1 28 0 338 199 0 96 chr3 89448410 89448546 -128588612 + LSAU Satellite Satellite 2 124 -374 272 290 11 0 chr3 89449561 89449751 -128587407 + CT-rich Low_complexity Low_complexity 1 192 0 559 174 42 141 chr3 89449782 89450023 -128587135 + Tigger1 DNA MER2_type 2202 2418 0 1546 158 59 26 chr3 89450702 89450975 -128586183 + AluSx SINE Alu 12 293 -19 33 73 0 0 chr3 89454318 89454386 -128582772 + AT_rich Low_complexity Low_complexity 1 68 0 21 71 0 0 chr3 89454674 89454716 -128582442 + AT_rich Low_complexity Low_complexity 1 42 0 35 24 0 0 chr3 89454786 89454828 -128582330 + AT_rich Low_complexity Low_complexity 1 42 0 911 143 0 0 chr3 89454902 89455035 -128582123 + AluSq/x SINE Alu 1 133 -180 22 0 0 0 chr3 89455035 89455057 -128582101 + AT_rich Low_complexity Low_complexity 1 22 0 1806 164 7 7 chr3 89455063 89455368 -128581790 + AluSq SINE Alu 9 313 0 231 293 40 0 chr3 89455392 89455491 -128581667 - MER5B DNA MER1_type -1 177 75 4413 209 39 18 chr3 89455519 89457439 -128579719 + L1PB4 LINE L1 4190 6156 0 2171 116 0 10 chr3 89457444 89457755 -128579403 + AluSg SINE Alu 1 308 -2 32 43 0 0 chr3 89457821 89457867 -128579291 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr3 89458197 89458219 -128578939 + AT_rich Low_complexity Low_complexity 1 22 0 3741 209 62 20 chr3 89459452 89460818 -128576340 + L1MA9 LINE L1 4255 5693 -619 1964 213 39 37 chr3 89460819 89461360 -128575798 + L1MA9 LINE L1 5756 6312 0 204 67 0 0 chr3 89463739 89463769 -128573389 + (CAA)n Simple_repeat Simple_repeat 2 31 0 225 0 0 0 chr3 89463805 89463830 -128573328 + (CAA)n Simple_repeat Simple_repeat 1 25 0 389 325 85 68 chr3 89465573 89465985 -128571173 + L1MEd LINE L1 803 1221 -4898 1105 138 5 62 chr3 89466054 89466264 -128570894 - L1MA6 LINE L1 -576 5724 5527 * 2386 176 58 2 chr3 89466260 89466298 -128570860 + L1MA6 LINE L1 5742 5776 -524 264 30 0 0 chr3 89466298 89466331 -128570827 + (CA)n Simple_repeat Simple_repeat 2 34 0 2386 176 58 2 chr3 89466331 89466757 -128570401 + L1MA6 LINE L1 5776 6232 -68 273 163 90 3 chr3 89466787 89466854 -128570304 - L1MA6 LINE L1 -9 6291 6218 653 47 23 0 chr3 89467103 89467189 -128569969 - AluSg/x SINE Alu -6 304 217 428 327 4 0 chr3 89467210 89467569 -128569589 + BSR/Beta Satellite Satellite 1 360 -309 793 221 21 36 chr3 89467607 89468973 -128568185 + BSR/Beta Satellite Satellite 1 1345 -2 1395 276 22 7 chr3 89469026 89469529 -128567629 + BSR/Beta Satellite Satellite 1 510 -50 694 254 2 45 chr3 89469552 89470217 -128566941 - BSR/Beta Satellite Satellite -7 636 1 3452 152 16 30 chr3 89470217 89470593 -128566565 - LTR43 LTR ERV1 0 602 223 1823 161 3 0 chr3 89470593 89470891 -128566267 - AluSx SINE Alu -13 299 1 3452 152 16 30 chr3 89470891 89471072 -128566086 - LTR43 LTR ERV1 -379 223 51 5681 139 20 14 chr3 89471072 89472036 -128565122 - LTR5 LTR ERVK 0 969 1 3452 152 16 30 chr3 89472036 89472082 -128565076 - LTR43 LTR ERV1 -551 51 6 3047 204 52 29 chr3 89472098 89472756 -128564402 - LTR43-int LTR ERV1 -1 4797 4125 311 176 0 0 chr3 89472752 89472803 -128564355 - LTR43-int LTR ERV1 -906 3892 3842 * 2088 268 71 57 chr3 89473367 89474517 -128562641 - LTR43-int LTR ERV1 -3842 956 1 3118 128 19 6 chr3 89474517 89474993 -128562165 - LTR43 LTR ERV1 0 602 121 351 317 0 0 chr3 89476374 89476494 -128560664 - L1ME3A LINE L1 -232 5938 5819 3697 212 32 26 chr3 89476500 89477675 -128559483 - L1MB3 LINE L1 -1 6182 4891 787 79 0 0 chr3 89477676 89477777 -128559381 + AluY SINE Alu 2 102 -209 2690 71 0 9 chr3 89477777 89478116 -128559042 + LTR17 LTR ERV1 445 780 0 6834 69 23 31 chr3 89478424 89479249 -128557909 - L1PA8 LINE L1 -2 6170 5354 1895 156 0 13 chr3 89479249 89479563 -128557595 - AluSg SINE Alu 0 310 1 6834 69 23 31 chr3 89479563 89480234 -128556924 - L1PA8 LINE L1 -818 5354 4679 219 330 22 33 chr3 89480234 89480316 -128556842 - MIR SINE MIR -72 136 54 200 33 0 33 chr3 89480990 89481020 -128556138 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 384 158 0 0 chr3 89481022 89481079 -128556079 - AluJ/FRAM SINE Alu -20 282 226 959 253 0 27 chr3 89481115 89481372 -128555786 + AluJo SINE Alu 1 250 -62 183 80 0 0 chr3 89481378 89481403 -128555755 + (TG)n Simple_repeat Simple_repeat 2 26 0 3357 227 100 7 chr3 89487525 89488075 -128549083 - L1MC3 LINE L1 -979 6806 6309 1808 185 31 59 chr3 89488075 89488519 -128548639 - MSTB1 LTR MaLR 0 432 1 3357 227 100 7 chr3 89488519 89488924 -128548234 - L1MC3 LINE L1 -1476 6309 5762 2098 187 26 70 chr3 89489051 89489164 -128547994 - MER31-int LTR ERV1 -561 4375 4259 1505 158 90 0 chr3 89489164 89489430 -128547728 - AluJb SINE Alu -22 290 1 2098 187 26 70 chr3 89489430 89489857 -128547301 - MER31-int LTR ERV1 -677 4259 3859 1262 260 50 14 chr3 89489894 89490256 -128546902 - LTR10C LTR ERV1 -29 562 188 258 32 0 0 chr3 89490278 89490309 -128546849 + (CA)n Simple_repeat Simple_repeat 2 32 0 3211 206 40 78 chr3 89490365 89491166 -128545992 - MER31-int LTR ERV1 -1063 3873 3114 2199 101 0 0 chr3 89491166 89491462 -128545696 - AluY SINE Alu -14 297 2 3211 206 40 78 chr3 89491462 89491632 -128545526 - MER31-int LTR ERV1 -1822 3114 2939 1157 209 102 59 chr3 89491646 89492157 -128545001 - MER31-int LTR ERV1 -2705 2231 1699 1453 215 20 27 chr3 89492759 89493206 -128543952 - MER31-int LTR ERV1 -3430 1506 1063 295 167 37 0 chr3 89493209 89493263 -128543895 + MLT2B3 LTR ERVL 3 58 -496 * 332 263 11 42 chr3 89493241 89493452 -128543706 - SATR1 Satellite Satellite -91 204 1 22 65 0 0 chr3 89493809 89493840 -128543318 + GC_rich Low_complexity Low_complexity 1 31 0 2126 99 3 13 chr3 89496124 89496437 -128540721 + AluSq SINE Alu 1 310 -3 1996 134 0 6 chr3 89496461 89496775 -128540383 + AluSx SINE Alu 1 312 0 1526 134 32 0 chr3 89496785 89497032 -128540126 + AluJo SINE Alu 1 255 -57 264 284 15 0 chr3 89497117 89497184 -128539974 - MER112 DNA MER1_type -175 85 18 2206 114 0 6 chr3 89500378 89500693 -128536465 - AluSq SINE Alu 0 313 1 643 224 29 86 chr3 89500760 89500850 -128536308 + L1MEd LINE L1 23 117 -6002 2061 105 11 0 chr3 89500850 89501136 -128536022 + AluSq SINE Alu 1 289 -24 333 0 0 0 chr3 89501141 89501178 -128535980 + (TAAAA)n Simple_repeat Simple_repeat 3 39 0 643 224 29 86 chr3 89501178 89501291 -128535867 + L1MEd LINE L1 121 220 -5899 1071 270 68 46 chr3 89501352 89501589 -128535569 + L1MEd LINE L1 329 559 -5560 2020 93 17 7 chr3 89501589 89501878 -128535280 + AluSq SINE Alu 1 292 -21 1071 270 68 46 chr3 89501878 89502095 -128535063 + L1MEd LINE L1 559 793 -5326 365 274 0 32 chr3 89502132 89502256 -128534902 + MLT1E LTR MaLR 1 120 -473 583 267 0 0 chr3 89502258 89502439 -128534719 - FLAM_C SINE Alu 0 182 2 2008 101 28 0 chr3 89502449 89502736 -128534422 - AluSx SINE Alu -17 295 1 312 242 140 31 chr3 89502745 89503051 -128534107 + MLT1E3 LTR MaLR 13 397 -227 1946 194 113 13 chr3 89503055 89504034 -128533124 - SATR1 Satellite Satellite -1 1077 1 24 32 0 0 chr3 89504170 89504201 -128532957 + AT_rich Low_complexity Low_complexity 1 31 0 280 245 6 57 chr3 89504253 89504412 -128532746 + (TTA)n Simple_repeat Simple_repeat 1 151 0 2098 206 114 23 chr3 89504421 89506276 -128530882 - SATR1 Satellite Satellite -20 2023 1 207 228 13 57 chr3 89506301 89506459 -128530699 + (TTA)n Simple_repeat Simple_repeat 1 151 0 310 250 6 39 chr3 89506493 89506649 -128530509 + (TTA)n Simple_repeat Simple_repeat 1 151 0 2005 208 120 8 chr3 89506658 89507754 -128529404 - SATR1 Satellite Satellite -3 1218 1 1120 189 47 130 chr3 89507882 89508495 -128528663 + MER31-int LTR ERV1 1699 2435 -4323 1908 222 120 37 chr3 89508760 89509021 -128528137 + MER31-int LTR ERV1 4338 4576 -1755 899 202 202 33 chr3 89509021 89509264 -128527894 - AluSc SINE Alu -14 285 2 1908 222 120 37 chr3 89509264 89509701 -128527457 + MER31-int LTR ERV1 4576 5094 -1237 355 250 0 38 chr3 89509717 89509797 -128527361 + MER31-int LTR ERV1 3884 3960 -976 1611 230 77 56 chr3 89509871 89510337 -128526821 + MER31-int LTR ERV1 3605 4080 -791 7803 227 50 28 chr3 89560670 89563552 -128473606 - L1M3 LINE L1 -444 5727 2773 33 80 0 0 chr3 89563598 89563673 -128473485 + AT_rich Low_complexity Low_complexity 1 75 0 2165 118 3 0 chr3 89563818 89564115 -128473043 - AluSg SINE Alu -12 298 1 1553 233 46 4 chr3 89565464 89565855 -128471303 + MLT2B1 LTR ERVL 9 473 -42 189 74 0 0 chr3 89565855 89565882 -128471276 + (TATG)n Simple_repeat Simple_repeat 2 28 0 1553 233 46 4 chr3 89565882 89565927 -128471231 + MLT2B1 LTR ERVL 473 515 0 2123 137 36 22 chr3 89565962 89566321 -128470837 + THE1B LTR MaLR 1 364 0 10716 118 12 3 chr3 89566321 89567887 -128469271 + THE1B-int LTR MaLR 1 1580 0 2021 140 50 36 chr3 89567889 89568246 -128468912 + THE1B LTR MaLR 3 364 0 430 301 9 0 chr3 89568730 89568843 -128468315 - MER45 DNA AcHobo -1465 116 3 1694 153 82 20 chr3 89569023 89569376 -128467782 + THE1C LTR MaLR 1 375 0 9084 143 57 3 chr3 89569376 89570876 -128466282 + THE1C-int LTR MaLR 1 1580 0 1888 145 64 22 chr3 89570876 89571234 -128465924 + THE1C LTR MaLR 1 373 -2 2521 49 3 7 chr3 89572173 89572478 -128464680 - AluY SINE Alu -6 305 2 21 36 0 0 chr3 89572979 89573007 -128464151 + AT_rich Low_complexity Low_complexity 1 28 0 182 271 0 0 chr3 89573504 89573552 -128463606 + MIR SINE MIR 94 141 -121 376 242 20 20 chr3 89573735 89573834 -128463324 + MIR SINE MIR 37 135 -127 279 125 21 0 chr3 89574064 89574112 -128463046 - L1MC1 LINE L1 -6 6327 6279 21 0 0 0 chr3 89574175 89574196 -128462962 + AT_rich Low_complexity Low_complexity 1 21 0 453 195 12 0 chr3 89574736 89574818 -128462340 - THE1A LTR MaLR -50 305 223 2070 64 8 8 chr3 89575176 89575440 -128461718 - AluY SINE Alu -12 299 36 339 65 0 0 chr3 89576194 89576240 -128460918 + (TG)n Simple_repeat Simple_repeat 1 46 0 1557 195 0 25 chr3 89576241 89576523 -128460635 - AluJb SINE Alu -34 278 4 902 224 46 25 chr3 89576750 89576991 -128460167 + MLT1B LTR MaLR 1 246 -144 1721 110 29 158 chr3 89576993 89577410 -128459748 + THE1B LTR MaLR 2 364 0 705 234 26 0 chr3 89577476 89577630 -128459528 + MLT1B LTR MaLR 310 467 0 502 321 101 5 chr3 89578268 89578486 -128458672 - MER8 DNA MER2_type 0 239 1 1487 265 129 8 chr3 89578486 89579090 -128458068 + L1MD1 LINE L1 5360 6036 -206 1604 232 21 4 chr3 89579100 89579451 -128457707 - MLT1A1 LTR MaLR -5 588 3 351 146 146 0 chr3 89579455 89579544 -128457614 + L1ME2 LINE L1 6018 6119 -45 702 238 182 53 chr3 89579571 89579873 -128457285 + MLT1A1 LTR MaLR 19 359 -6 212 347 41 0 chr3 89581005 89581103 -128456055 + MIR SINE MIR 51 152 -110 253 366 41 8 chr3 89581220 89581343 -128455815 + MIR SINE MIR 31 157 -105 196 289 0 0 chr3 89581354 89581399 -128455759 + L2 LINE L2 3210 3254 -18 22 35 0 0 chr3 89581609 89581638 -128455520 + AT_rich Low_complexity Low_complexity 1 29 0 1984 133 33 3 chr3 89582645 89582946 -128454212 + AluSx SINE Alu 3 312 0 1591 232 73 35 chr3 89583400 89583776 -128453382 - MER39 LTR ERV1 0 707 124 2407 62 0 3 chr3 89583776 89584081 -128453077 - AluY SINE Alu -7 304 1 1591 232 73 35 chr3 89584081 89584205 -128452953 - MER39 LTR ERV1 -583 124 6 3373 138 44 8 chr3 89585674 89586262 -128450896 + LTR38B LTR ERV1 2 610 0 225 176 0 0 chr3 89587530 89587564 -128449594 + Alu SINE Alu 1 34 -268 1657 188 3 3 chr3 89589504 89589802 -128447356 + AluJb SINE Alu 3 300 -12 320 294 77 57 chr3 89593232 89593426 -128443732 - L1M4 LINE L1 -2937 3209 3012 225 176 0 0 chr3 89594417 89594451 -128442707 - Alu SINE Alu -269 34 1 3373 138 44 8 chr3 89595719 89596307 -128440851 - LTR38B LTR ERV1 0 610 2 1591 232 73 35 chr3 89597776 89597900 -128439258 + MER39 LTR ERV1 6 124 -583 2407 62 0 3 chr3 89597900 89598205 -128438953 + AluY SINE Alu 1 304 -7 1591 232 73 35 chr3 89598205 89598581 -128438577 + MER39 LTR ERV1 124 707 0 1984 133 33 3 chr3 89599035 89599336 -128437822 - AluSx SINE Alu 0 312 3 22 35 0 0 chr3 89600343 89600372 -128436786 + AT_rich Low_complexity Low_complexity 1 29 0 196 289 0 0 chr3 89600582 89600627 -128436531 - L2 LINE L2 -18 3254 3210 253 366 41 8 chr3 89600638 89600761 -128436397 - MIR SINE MIR -105 157 31 212 347 41 0 chr3 89600878 89600976 -128436182 - MIR SINE MIR -110 152 51 702 238 182 53 chr3 89602108 89602410 -128434748 - MLT1A1 LTR MaLR -6 359 19 351 146 146 0 chr3 89602437 89602526 -128434632 - L1ME2 LINE L1 -45 6119 6018 1604 232 21 4 chr3 89602530 89602881 -128434277 + MLT1A1 LTR MaLR 3 588 -5 1487 265 129 8 chr3 89602891 89603495 -128433663 - L1MD1 LINE L1 -206 6036 5360 502 321 101 5 chr3 89603495 89603713 -128433445 + MER8 DNA MER2_type 1 239 0 705 234 26 0 chr3 89604351 89604505 -128432653 - MLT1B LTR MaLR 0 467 310 1721 110 29 158 chr3 89604571 89604988 -128432170 - THE1B LTR MaLR 0 364 2 902 224 46 25 chr3 89604990 89605231 -128431927 - MLT1B LTR MaLR -144 246 1 1557 195 0 25 chr3 89605458 89605740 -128431418 + AluJb SINE Alu 4 278 -34 339 65 0 0 chr3 89605741 89605787 -128431371 + (CA)n Simple_repeat Simple_repeat 1 46 0 2070 64 8 8 chr3 89606685 89606949 -128430209 - AluY SINE Alu -12 299 36 1888 145 64 22 chr3 89607725 89608083 -128429075 - THE1C LTR MaLR -2 373 1 9084 143 57 3 chr3 89608083 89609583 -128427575 - THE1C-int LTR MaLR 0 1580 1 1694 153 82 20 chr3 89609583 89609936 -128427222 - THE1C LTR MaLR 0 375 1 430 301 9 0 chr3 89610116 89610229 -128426929 + MER45 DNA AcHobo 3 116 -1465 2021 140 50 36 chr3 89610713 89611070 -128426088 - THE1B LTR MaLR 0 364 3 10590 116 15 4 chr3 89611072 89612635 -128424523 - THE1B-int LTR MaLR 0 1580 1 2108 139 36 22 chr3 89612635 89612994 -128424164 - THE1B LTR MaLR 0 364 1 1553 235 45 5 chr3 89613029 89613074 -128424084 - MLT2B1 LTR ERVL 0 515 473 189 74 0 0 chr3 89613074 89613101 -128424057 + (CATA)n Simple_repeat Simple_repeat 2 28 0 1553 235 45 5 chr3 89613101 89613492 -128423666 - MLT2B1 LTR ERVL -42 473 9 2165 118 3 0 chr3 89614841 89615138 -128422020 + AluSg SINE Alu 1 298 -12 33 80 0 0 chr3 89615283 89615358 -128421800 + AT_rich Low_complexity Low_complexity 1 75 0 7801 221 55 24 chr3 89615404 89618645 -128418513 + L1MB3 LINE L1 2773 6123 -60 643 241 22 0 chr3 89618646 89618783 -128418375 + Tigger3(Golem) DNA MER2_type 2 141 -2888 607 140 0 0 chr3 89618798 89618891 -128418267 + Tigger3(Golem) DNA MER2_type 2800 2892 -137 329 308 42 33 chr3 89619431 89619551 -128417607 + MIR SINE MIR 2 122 -140 24 67 0 0 chr3 89619699 89619744 -128417414 + AT_rich Low_complexity Low_complexity 1 45 0 6597 93 14 11 chr3 89621660 89622631 -128414527 + L1MA1 LINE L1 5329 6302 0 32 26 0 0 chr3 89622631 89622670 -128414488 + AT_rich Low_complexity Low_complexity 1 39 0 34 24 0 0 chr3 89622703 89622744 -128414414 + AT_rich Low_complexity Low_complexity 1 41 0 321 335 47 62 chr3 89622805 89623062 -128414096 - MIR SINE MIR 0 262 10 253 211 123 35 chr3 89624776 89624890 -128412268 + L2 LINE L2 1504 1627 -1687 536 291 141 54 chr3 89625044 89625357 -128411801 - MLT1H LTR MaLR -1 548 209 271 352 96 10 chr3 89625896 89626095 -128411063 - MIR SINE MIR 0 262 47 932 270 97 0 chr3 89627760 89628071 -128409087 - L1ME3A LINE L1 -224 5946 5606 25 0 0 0 chr3 89628775 89628800 -128408358 + AT_rich Low_complexity Low_complexity 1 25 0 29 28 0 0 chr3 89628901 89628937 -128408221 + AT_rich Low_complexity Low_complexity 1 36 0 624 253 112 0 chr3 89631443 89631613 -128405545 - MER5A DNA MER1_type 0 189 1 218 329 71 0 chr3 89632748 89632833 -128404325 - MIR SINE MIR -123 139 49 22 35 0 0 chr3 89633183 89633212 -128403946 + AT_rich Low_complexity Low_complexity 1 29 0 1971 201 50 1 chr3 89634145 89634896 -128402262 + L1MA9 LINE L1 4926 5710 -602 997 219 30 91 chr3 89634894 89635300 -128401858 + L1MA2 LINE L1 5605 5985 -319 * 1119 246 33 7 chr3 89635447 89635752 -128401406 + L1MA9 LINE L1 5924 6236 -76 202 333 0 17 chr3 89636305 89636365 -128400793 - L2 LINE L2 -23 3290 3232 358 307 107 37 chr3 89637537 89637752 -128399406 - MIR SINE MIR -18 244 15 29 90 0 0 chr3 89638584 89638662 -128398496 + AT_rich Low_complexity Low_complexity 1 78 0 505 161 0 0 chr3 89639187 89639268 -128397890 + HY3 scRNA scRNA 1 81 -20 194 61 0 30 chr3 89639277 89639310 -128397848 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 29 90 0 0 chr3 89639659 89639737 -128397421 + AT_rich Low_complexity Low_complexity 1 78 0 1210 184 38 120 chr3 89640211 89640635 -128396523 + MLT1B LTR MaLR 2 390 0 1420 182 7 39 chr3 89640770 89641075 -128396083 + AluJb SINE Alu 11 306 0 410 279 26 13 chr3 89641961 89642115 -128395043 - L1M4c LINE L1 -4783 1601 1446 194 332 164 34 chr3 89642782 89642990 -128394168 + MIR SINE MIR 1 235 -27 262 283 142 17 chr3 89643399 89643519 -128393639 - MIR SINE MIR -56 206 72 28 50 0 17 chr3 89643718 89643745 -128393413 + AT_rich Low_complexity Low_complexity 1 27 -32 2933 189 36 2 chr3 89643745 89644328 -128392830 + LTR26 LTR ERV1 1 603 0 28 50 0 17 chr3 89644328 89644360 -128392798 + AT_rich Low_complexity Low_complexity 27 59 0 25 90 0 0 chr3 89644914 89644981 -128392177 + AT_rich Low_complexity Low_complexity 1 67 0 494 296 84 9 chr3 89645746 89645959 -128391199 + L2 LINE L2 3084 3312 -1 25 31 0 0 chr3 89646822 89646854 -128390304 + AT_rich Low_complexity Low_complexity 1 32 0 412 72 29 0 chr3 89646981 89647050 -128390108 + (TG)n Simple_repeat Simple_repeat 2 72 0 204 289 216 39 chr3 89648262 89648466 -128388692 - MIR SINE MIR -12 250 11 1269 39 0 0 chr3 89648611 89648765 -128388393 - L1PA5 LINE L1 -1 6153 6000 180 0 0 0 chr3 89649156 89649176 -128387982 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4545 197 94 8 chr3 89650658 89651778 -128385380 + L1MC2 LINE L1 5122 6334 -10 1790 160 3 7 chr3 89651959 89652241 -128384917 + AluJo SINE Alu 1 281 -31 219 36 0 0 chr3 89652245 89652273 -128384885 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 2163 109 0 0 chr3 89653021 89653343 -128383815 - AluSx SINE Alu 0 322 1 21 0 0 0 chr3 89654018 89654039 -128383119 + AT_rich Low_complexity Low_complexity 1 21 0 344 339 72 14 chr3 89654655 89654876 -128382282 + MIR SINE MIR 23 256 -6 2527 39 7 0 chr3 89657034 89657342 -128379816 + AluY SINE Alu 2 311 0 186 43 0 0 chr3 89657582 89657605 -128379553 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 274 287 148 16 chr3 89657629 89657751 -128379407 - MIR SINE MIR -26 236 99 38 39 0 0 chr3 89658806 89658858 -128378300 + AT_rich Low_complexity Low_complexity 1 52 0 8230 67 5 7 chr3 89659765 89660839 -128376319 - MER11C LTR ERVK 0 1071 1 2300 324 92 6 chr3 89661139 89662162 -128374996 - L2 LINE L2 -680 2634 1524 783 306 94 17 chr3 89662159 89662774 -128374384 + L2 LINE L2 2648 3312 -1 * 568 298 60 36 chr3 89663280 89663528 -128373630 - MIR SINE MIR -1 261 8 33 66 0 0 chr3 89663776 89663837 -128373321 + AT_rich Low_complexity Low_complexity 1 61 0 25 51 0 0 chr3 89664218 89664257 -128372901 + AT_rich Low_complexity Low_complexity 1 39 0 256 234 0 16 chr3 89664847 89664911 -128372247 + (TA)n Simple_repeat Simple_repeat 1 63 0 318 51 0 0 chr3 89665831 89665870 -128371288 - LTR56 LTR ERV1 -58 387 349 1442 268 33 11 chr3 89666328 89666851 -128370307 - MLT1E3 LTR MaLR 0 624 39 1689 182 3 13 chr3 89666977 89667279 -128369879 + AluJo SINE Alu 1 299 -13 309 287 132 31 chr3 89667900 89668029 -128369129 + LTR67 LTR ERVL 13 154 -403 1595 233 29 39 chr3 89668438 89668948 -128368210 + MLT1D LTR MaLR 1 505 0 7599 28 0 2 chr3 89670595 89671976 -128365182 + L1PA4 LINE L1 4776 6155 0 216 0 0 0 chr3 89672008 89672032 -128365126 + (A)n Simple_repeat Simple_repeat 1 24 0 1895 87 0 8 chr3 89672256 89672521 -128364637 + L1PA7 LINE L1 5892 6154 0 25 0 0 0 chr3 89673156 89673181 -128363977 + AT_rich Low_complexity Low_complexity 1 25 0 512 124 9 38 chr3 89673513 89673618 -128363540 + L1PA5 LINE L1 6053 6154 0 1845 94 0 8 chr3 89673897 89674162 -128362996 + L1PA7 LINE L1 5892 6154 0 1147 194 153 31 chr3 89675960 89676254 -128360904 + MER2 DNA MER2_type 1 330 -15 1328 86 0 0 chr3 89676346 89676520 -128360638 + AluSc SINE Alu 134 307 -2 1629 208 31 14 chr3 89676528 89676888 -128360270 + L1PB4 LINE L1 5752 6117 -39 2484 86 43 6 chr3 89676963 89677314 -128359844 + THE1B LTR MaLR 1 364 0 511 187 0 0 chr3 89677622 89677713 -128359445 - L1PA16 LINE L1 -171 5995 5905 21 82 0 0 chr3 89678101 89678150 -128359008 + AT_rich Low_complexity Low_complexity 1 49 0 807 209 42 5 chr3 89679092 89679283 -128357875 + L1MD2 LINE L1 6161 6358 -1 1998 176 38 35 chr3 89681704 89682253 -128354905 - MLT2A2 LTR ERVL 0 554 1 1646 161 0 53 chr3 89682739 89682865 -128354293 + AluJb SINE Alu 14 145 -167 189 0 0 0 chr3 89682865 89682886 -128354272 + (TA)n Simple_repeat Simple_repeat 2 22 0 1646 161 0 53 chr3 89682886 89683058 -128354100 + AluJb SINE Alu 145 296 -16 440 354 63 29 chr3 89683286 89683701 -128353457 - L1ME3A LINE L1 -219 5951 5523 267 338 81 22 chr3 89684119 89684255 -128352903 + MIR SINE MIR 116 259 -3 2449 47 3 0 chr3 89685603 89685902 -128351256 - AluY SINE Alu -11 300 1 211 0 0 81 chr3 89686361 89686398 -128350760 + (TAAAAA)n Simple_repeat Simple_repeat 2 35 0 209 268 0 0 chr3 89686427 89686468 -128350690 + polypurine Low_complexity Low_complexity 5 45 0 706 306 75 32 chr3 89687271 89687673 -128349485 + L2 LINE L2 2863 3281 -32 369 0 0 0 chr3 89687690 89687731 -128349427 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 186 71 0 0 chr3 89688585 89688613 -128348545 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 225 0 0 0 chr3 89688624 89688649 -128348509 + (T)n Simple_repeat Simple_repeat 1 25 0 3769 49 25 25 chr3 89689236 89689726 -128347432 - LTR2B LTR ERV1 0 490 1 291 104 0 0 chr3 89690245 89690293 -128346865 + (TC)n Simple_repeat Simple_repeat 2 49 0 1994 126 3 7 chr3 89691270 89691563 -128345595 - AluSx SINE Alu -19 293 2 24 53 0 0 chr3 89691862 89691900 -128345258 + AT_rich Low_complexity Low_complexity 1 38 0 35 63 0 0 chr3 89692022 89692085 -128345073 + AT_rich Low_complexity Low_complexity 1 63 0 256 330 108 44 chr3 89692886 89693089 -128344069 + L2 LINE L2 1217 1432 -1882 396 59 0 0 chr3 89693454 89693505 -128343653 + (CA)n Simple_repeat Simple_repeat 2 52 0 633 262 90 49 chr3 89693515 89693782 -128343376 - LTR16A LTR ERVL 0 450 173 263 358 73 27 chr3 89693848 89694108 -128343050 + L2 LINE L2 2041 2312 -1002 341 298 26 92 chr3 89694110 89694338 -128342820 + L2 LINE L2 2633 2845 -469 289 287 11 99 chr3 89694511 89694692 -128342466 + L2 LINE L2 3144 3308 -5 2053 93 4 0 chr3 89694741 89695021 -128342137 + AluSg SINE Alu 27 307 -3 196 323 0 81 chr3 89695425 89695466 -128341692 - MIR SINE MIR -121 141 98 2318 88 3 0 chr3 89695466 89695763 -128341395 + AluSp SINE Alu 1 298 -15 196 323 0 81 chr3 89695763 89695820 -128341338 - MIR SINE MIR -164 98 51 2304 82 0 0 chr3 89695820 89696111 -128341047 + AluSx SINE Alu 1 291 -21 245 294 0 35 chr3 89696992 89697077 -128340081 - L2 LINE L2 -3 3310 3229 692 280 61 94 chr3 89698134 89698677 -128338481 + MLT1H LTR MaLR 12 536 -13 225 65 0 0 chr3 89698951 89698982 -128338176 + (TG)n Simple_repeat Simple_repeat 2 32 0 20067 61 1 1 chr3 89699507 89702903 -128334255 + L1PA6 LINE L1 2746 6153 -1 586 176 195 6 chr3 89704392 89704551 -128332607 + MER53 DNA DNA 1 189 0 205 270 81 27 chr3 89705225 89705299 -128331859 + L2 LINE L2 2075 2152 -1162 275 335 92 46 chr3 89705394 89705675 -128331483 + L2 LINE L2 2983 3276 -37 242 335 124 19 chr3 89706248 89706457 -128330701 - L2 LINE L2 -930 2384 2154 23 54 0 0 chr3 89707078 89707115 -128330043 + AT_rich Low_complexity Low_complexity 1 37 0 266 194 16 0 chr3 89707294 89707356 -128329802 + (TA)n Simple_repeat Simple_repeat 2 64 0 244 368 0 0 chr3 89708297 89708384 -128328774 + MIR SINE MIR 12 98 -164 12909 148 45 22 chr3 89708387 89710751 -128326407 + Tigger1 DNA MER2_type 1 2418 0 248 279 47 54 chr3 89711254 89711383 -128325775 + L1MC4 LINE L1 7914 8041 -1 479 332 122 8 chr3 89711759 89712227 -128324931 + L1MEc LINE L1 2095 2570 -3645 291 280 59 54 chr3 89713501 89713687 -128323471 + L1MEc LINE L1 2746 2932 -3283 322 294 77 57 chr3 89713698 89713892 -128323266 + L1MEc LINE L1 3081 3278 -2937 1627 188 3 3 chr3 89717324 89717622 -128319536 - AluJb SINE Alu -12 300 3 3334 139 44 8 chr3 89720686 89721274 -128315884 - LTR38B LTR ERV1 0 610 2 1591 238 69 35 chr3 89722743 89722867 -128314291 + MER39 LTR ERV1 6 124 -583 2363 62 0 3 chr3 89722867 89723172 -128313986 + AluY SINE Alu 1 304 -7 1591 238 69 35 chr3 89723172 89723545 -128313613 + MER39 LTR ERV1 124 702 -5 1982 130 33 3 chr3 89724005 89724306 -128312852 - AluSx SINE Alu 0 312 3 22 35 0 0 chr3 89725313 89725342 -128311816 + AT_rich Low_complexity Low_complexity 1 29 0 197 289 0 0 chr3 89725552 89725597 -128311561 - L2 LINE L2 -18 3254 3210 264 366 41 8 chr3 89725608 89725731 -128311427 - MIR SINE MIR -105 157 31 215 347 41 0 chr3 89725848 89725946 -128311212 - MIR SINE MIR -110 152 51 701 244 187 51 chr3 89727076 89727391 -128309767 - MLT1A1 LTR MaLR -4 361 4 356 157 146 0 chr3 89727407 89727496 -128309662 - L1ME2 LINE L1 -45 6119 6018 1611 232 21 3 chr3 89727500 89727851 -128309307 + MLT1A1 LTR MaLR 3 621 -5 1512 267 129 8 chr3 89727861 89728465 -128308693 - L1MD1 LINE L1 -206 6036 5360 498 321 101 5 chr3 89728465 89728683 -128308475 + MER8 DNA MER2_type 1 239 0 704 234 26 0 chr3 89729322 89729476 -128307682 - MLT1B LTR MaLR 0 467 310 1665 118 29 158 chr3 89729542 89729959 -128307199 - THE1B LTR MaLR 0 364 2 916 223 45 25 chr3 89729960 89730202 -128306956 - MLT1B LTR MaLR -143 247 1 1499 199 0 25 chr3 89730429 89730711 -128306447 + AluJb SINE Alu 4 278 -34 339 65 0 0 chr3 89730712 89730758 -128306400 + (CA)n Simple_repeat Simple_repeat 1 46 0 2050 64 8 8 chr3 89731516 89731781 -128305377 + AluY SINE Alu 36 300 -11 452 195 12 0 chr3 89732140 89732222 -128304936 + THE1A LTR MaLR 223 305 -50 21 0 0 0 chr3 89732762 89732783 -128304375 + AT_rich Low_complexity Low_complexity 1 21 0 283 125 21 0 chr3 89732846 89732894 -128304264 + L1MC1 LINE L1 6279 6327 -6 372 242 20 20 chr3 89733124 89733223 -128303935 - MIR SINE MIR -127 135 37 182 271 0 0 chr3 89733406 89733454 -128303704 - MIR SINE MIR -121 141 94 21 36 0 0 chr3 89733951 89733979 -128303179 + AT_rich Low_complexity Low_complexity 1 28 0 2343 54 3 10 chr3 89734480 89734776 -128302382 + AluY SINE Alu 2 295 -16 1842 145 64 22 chr3 89735738 89736096 -128301062 - THE1C LTR MaLR -2 373 1 2074 188 14 11 chr3 89736096 89736542 -128300616 - THE1C-int LTR MaLR 0 1580 1134 41 72 0 0 chr3 89736811 89736894 -128300264 + AT_rich Low_complexity Low_complexity 1 83 0 354 335 93 50 chr3 89737488 89737789 -128299369 + LTR16C LTR ERVL 3 316 -175 187 337 84 11 chr3 89739309 89739404 -128297754 + MIR SINE MIR 105 206 -56 303 28 0 0 chr3 89739905 89739941 -128297217 + (CA)n Simple_repeat Simple_repeat 2 37 0 236 281 65 126 chr3 89741549 89741780 -128295378 - MIR SINE MIR -25 237 21 340 333 39 16 chr3 89743190 89743319 -128293839 - L2 LINE L2 0 3272 3141 25 31 0 0 chr3 89743320 89743352 -128293806 + AT_rich Low_complexity Low_complexity 1 32 0 1149 198 32 131 chr3 89744886 89745291 -128291867 + MLT1A1 LTR MaLR 1 365 0 317 324 26 17 chr3 89745329 89745501 -128291657 + MIR SINE MIR 91 262 0 227 263 336 36 chr3 89746063 89746200 -128290958 + MER5A DNA MER1_type 12 189 0 301 317 102 36 chr3 89746333 89746500 -128290658 - MIR SINE MIR -71 191 14 268 157 26 43 chr3 89747484 89747599 -128289559 + (TA)n Simple_repeat Simple_repeat 2 114 0 306 0 0 0 chr3 89747601 89747635 -128289523 + (TG)n Simple_repeat Simple_repeat 2 35 0 2054 111 3 3 chr3 89747702 89747991 -128289167 + AluSp SINE Alu 5 293 -20 29 70 0 0 chr3 89749592 89749649 -128287509 + AT_rich Low_complexity Low_complexity 1 57 0 211 200 67 0 chr3 89749718 89749763 -128287395 + MIR3 SINE MIR 113 160 -48 468 309 114 81 chr3 89749854 89750767 -128286391 + L2 LINE L2 2330 3275 -38 430 289 197 0 chr3 89750953 89751105 -128286053 - LTR16A LTR ERVL 0 450 269 230 282 0 0 chr3 89751925 89751996 -128285162 - L1M2 LINE L1 -4465 2384 2314 21 0 0 0 chr3 89752548 89752569 -128284589 + AT_rich Low_complexity Low_complexity 1 21 0 396 302 71 0 chr3 89757293 89757441 -128279717 + MIR SINE MIR 45 204 -58 882 227 169 83 chr3 89757498 89758030 -128279128 - MLT1G LTR MaLR -2 588 1 26 0 0 0 chr3 89760245 89760271 -128276887 + AT_rich Low_complexity Low_complexity 1 26 0 445 254 94 39 chr3 89760890 89761071 -128276087 - MIR SINE MIR 0 262 72 1544 194 44 6 chr3 89762568 89762908 -128274250 - L1PB4 LINE L1 -1 6155 5803 1995 134 79 15 chr3 89762909 89763251 -128273907 + THE1B LTR MaLR 1 364 0 11551 100 1 1 chr3 89763251 89764825 -128272333 + THE1B-int LTR MaLR 1 1574 -6 2066 130 77 15 chr3 89764834 89765173 -128271985 + THE1B LTR MaLR 5 364 0 1168 143 11 0 chr3 89765173 89765362 -128271796 - L1PB4 LINE L1 -350 5806 5616 252 171 92 40 chr3 89765495 89765571 -128271587 - MIR SINE MIR -11 251 172 21 57 0 0 chr3 89766121 89766156 -128271002 + AT_rich Low_complexity Low_complexity 1 35 0 23 78 0 0 chr3 89766499 89766550 -128270608 + AT_rich Low_complexity Low_complexity 1 51 0 2303 40 7 0 chr3 89766826 89767101 -128270057 + AluY SINE Alu 26 302 -9 242 279 0 0 chr3 89767208 89767276 -128269882 + MIR SINE MIR 97 164 -98 27 49 0 0 chr3 89768145 89768186 -128268972 + AT_rich Low_complexity Low_complexity 1 41 0 198 295 151 36 chr3 89768522 89768661 -128268497 + MIR SINE MIR 103 257 -5 7604 162 13 6 chr3 89770336 89771324 -128265834 - L1PA11 LINE L1 0 6174 5194 213 39 0 0 chr3 89771324 89771350 -128265808 + (TG)n Simple_repeat Simple_repeat 1 26 0 7604 162 13 6 chr3 89771350 89772561 -128264597 - L1PA11 LINE L1 -980 5194 3956 302 118 0 20 chr3 89772561 89772612 -128264546 + L1P LINE L1 3500 3549 -2597 213 94 0 0 chr3 89772712 89772744 -128264414 + (A)n Simple_repeat Simple_repeat 1 32 0 1406 237 84 40 chr3 89772817 89773252 -128263906 - MLT1D LTR MaLR -7 498 49 25 65 0 0 chr3 89773338 89773384 -128263774 + AT_rich Low_complexity Low_complexity 1 46 0 28 29 0 0 chr3 89774707 89774742 -128262416 + AT_rich Low_complexity Low_complexity 1 35 0 320 296 26 58 chr3 89774846 89775035 -128262123 - L1M4 LINE L1 -840 5306 5124 23043 107 6 3 chr3 89776093 89780387 -128256771 + L1PA8 LINE L1 1863 6165 -7 228 280 28 28 chr3 89780400 89780543 -128256615 + (TATATG)n Simple_repeat Simple_repeat 2 144 0 1942 233 28 14 chr3 89784000 89784498 -128252660 + MLT1D LTR MaLR 1 505 0 202 286 105 76 chr3 89785445 89785556 -128251602 - MIR SINE MIR -27 235 116 2615 29 3 0 chr3 89785556 89785863 -128251295 + AluY SINE Alu 1 308 -3 202 286 105 76 chr3 89785863 89785922 -128251236 - MIR SINE MIR -146 116 60 346 269 135 14 chr3 89785960 89786101 -128251057 - MIR SINE MIR -32 230 73 632 243 22 68 chr3 89787382 89787604 -128249554 + MER58C DNA MER1_type 2 213 -2 311 136 0 0 chr3 89787645 89787689 -128249469 - MER6A DNA MER2_type 0 605 562 275 154 19 0 chr3 89787690 89787742 -128249416 - L1MA2 LINE L1 -20 6284 6232 2929 178 29 4 chr3 89787789 89788311 -128248847 - MER6A DNA MER2_type -70 535 1 183 42 0 0 chr3 89788852 89788876 -128248282 + (CA)n Simple_repeat Simple_repeat 1 24 0 342 281 107 0 chr3 89790738 89790859 -128246299 + L2 LINE L2 1813 1946 -1368 436 319 151 65 chr3 89791283 89791332 -128245826 + L2 LINE L2 2149 2192 -1121 539 257 37 55 chr3 89791332 89791550 -128245608 - MER58C DNA MER1_type 0 215 2 436 319 151 65 chr3 89791550 89792568 -128244590 + L2 LINE L2 2192 3311 -2 361 315 130 53 chr3 89793400 89793815 -128243343 + L2 LINE L2 2751 3305 -8 26 50 0 0 chr3 89794834 89794874 -128242284 + AT_rich Low_complexity Low_complexity 1 40 0 1888 142 4 4 chr3 89794895 89795211 -128241947 + AluSx SINE Alu 1 316 0 1276 220 4 15 chr3 89797641 89797760 -128239398 + AluJo SINE Alu 1 120 -192 231 36 0 0 chr3 89797760 89797788 -128239370 + (AAATG)n Simple_repeat Simple_repeat 3 30 0 1276 220 4 15 chr3 89797788 89797927 -128239231 + AluJo SINE Alu 120 256 -56 31 68 0 0 chr3 89799051 89799110 -128238048 + AT_rich Low_complexity Low_complexity 1 59 0 229 211 18 0 chr3 89800950 89801007 -128236151 + (CA)n Simple_repeat Simple_repeat 1 58 0 297 0 0 0 chr3 89801022 89801055 -128236103 + (TA)n Simple_repeat Simple_repeat 2 34 0 310 328 78 59 chr3 89802002 89802258 -128234900 + L1ME3A LINE L1 5626 5886 -284 297 315 63 9 chr3 89802674 89802785 -128234373 - MIR3 SINE MIR -7 201 85 342 381 20 36 chr3 89802826 89803075 -128234083 - MIR SINE MIR -6 256 12 21 0 0 0 chr3 89803325 89803346 -128233812 + AT_rich Low_complexity Low_complexity 1 21 0 1432 179 31 4 chr3 89803392 89803649 -128233509 - AluJo SINE Alu -38 274 11 432 119 24 36 chr3 89803771 89803855 -128233303 + AluS SINE Alu 18 100 -212 21 0 0 0 chr3 89804534 89804555 -128232603 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr3 89805971 89806003 -128231155 + AT_rich Low_complexity Low_complexity 1 32 0 191 401 14 14 chr3 89806292 89806439 -128230719 + MER5A DNA MER1_type 8 154 -35 259 381 21 0 chr3 89806969 89807066 -128230092 - L2 LINE L2 -36 3236 3138 21 36 0 0 chr3 89807216 89807244 -128229914 + AT_rich Low_complexity Low_complexity 1 28 0 1986 168 0 0 chr3 89807245 89807549 -128229609 + AluSx SINE Alu 1 304 -8 304 372 210 18 chr3 89807757 89808439 -128228719 - L2 LINE L2 -420 2894 2082 694 373 60 32 chr3 89808455 89808902 -128228256 - L2 LINE L2 -2233 1081 605 2330 92 0 0 chr3 89808902 89809195 -128227963 + AluSx SINE Alu 1 293 -19 694 373 60 32 chr3 89809195 89809460 -128227698 - L2 LINE L2 -2709 605 349 378 0 0 0 chr3 89809682 89809724 -128227434 + (CA)n Simple_repeat Simple_repeat 2 43 0 189 0 0 0 chr3 89809895 89809916 -128227242 + (CA)n Simple_repeat Simple_repeat 1 21 0 369 0 0 0 chr3 89809994 89810035 -128227123 + (CA)n Simple_repeat Simple_repeat 1 41 0 2396 52 7 7 chr3 89810613 89810920 -128226238 + AluY SINE Alu 1 307 -4 866 104 7 14 chr3 89812511 89812655 -128224503 + L1PA13 LINE L1 6017 6159 -4 1638 169 11 0 chr3 89813507 89813786 -128223372 - AluJb SINE Alu -30 282 1 1040 142 71 38 chr3 89814043 89814254 -128222904 - L1M1 LINE L1 -694 5608 5391 2239 189 18 2 chr3 89814254 89814694 -128222464 + L1MA4 LINE L1 5841 6292 -8 32 0 0 0 chr3 89814699 89814731 -128222427 + AT_rich Low_complexity Low_complexity 1 32 0 1969 98 4 11 chr3 89814732 89815006 -128222152 - AluSx SINE Alu -11 301 30 188 67 33 0 chr3 89815086 89815116 -128222042 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 183 80 0 0 chr3 89816403 89816428 -128220730 + (TA)n Simple_repeat Simple_repeat 2 26 0 230 272 136 12 chr3 89816552 89816721 -128220437 + MIR SINE MIR 59 248 -14 21 0 0 0 chr3 89816722 89816743 -128220415 + AT_rich Low_complexity Low_complexity 1 21 0 231 36 0 0 chr3 89817083 89817111 -128220047 + (CA)n Simple_repeat Simple_repeat 2 29 0 239 333 30 20 chr3 89817478 89817577 -128219581 - L2 LINE L2 -215 3057 2958 434 287 211 19 chr3 89817853 89818118 -128219040 + L2 LINE L2 2998 3313 0 303 377 96 23 chr3 89818127 89818514 -128218644 - L2 LINE L2 -703 2611 2197 554 277 84 38 chr3 89819600 89819838 -128217320 - MIR SINE MIR -12 250 2 263 222 0 14 chr3 89820349 89820421 -128216737 + (CATATA)n Simple_repeat Simple_repeat 5 75 0 7139 192 65 12 chr3 89820733 89821310 -128215848 + L1MC1 LINE L1 3 548 -5878 2336 140 13 5 chr3 89821310 89821682 -128215476 - THE1C LTR MaLR 0 375 1 7139 192 65 12 chr3 89821682 89823128 -128214030 + L1MC1 LINE L1 548 2223 -4203 9594 236 43 14 chr3 89823143 89825427 -128211731 + L1MC1 LINE L1 2429 4644 -1969 1424 143 158 22 chr3 89825427 89825700 -128211458 + AluSx SINE Alu 1 310 -2 9594 236 43 14 chr3 89825700 89825996 -128211162 + L1MC1 LINE L1 4644 4930 -1683 234 0 0 0 chr3 89825996 89826022 -128211136 + (CGGAA)n Simple_repeat Simple_repeat 3 28 0 9594 236 43 14 chr3 89826022 89827501 -128209657 + L1MC1 LINE L1 4930 6607 -6 215 196 80 0 chr3 89828716 89828828 -128208330 + (TA)n Simple_repeat Simple_repeat 2 122 0 255 114 0 0 chr3 89829373 89829417 -128207741 + (CA)n Simple_repeat Simple_repeat 1 44 0 320 143 0 0 chr3 89829822 89829878 -128207280 - L1MA1 LINE L1 -159 6143 6088 24 32 0 0 chr3 89830655 89830686 -128206472 + AT_rich Low_complexity Low_complexity 1 31 0 351 0 0 0 chr3 89831000 89831039 -128206119 + (CA)n Simple_repeat Simple_repeat 2 40 0 557 261 0 51 chr3 89831873 89832030 -128205128 - MIR SINE MIR 0 262 114 277 273 0 18 chr3 89832097 89832152 -128205006 - L2 LINE L2 -76 3196 3143 271 298 135 10 chr3 89832992 89833096 -128204062 + L2 LINE L2 3154 3270 -2 180 111 0 0 chr3 89835022 89835049 -128202109 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 198 288 108 18 chr3 89835796 89835907 -128201251 + MIR SINE MIR 124 244 -18 412 332 62 28 chr3 89836098 89836309 -128200849 - L2 LINE L2 -6 3307 3090 367 326 120 22 chr3 89836518 89836785 -128200373 - L2 LINE L2 -839 2475 2183 1534 62 0 40 chr3 89836797 89837021 -128200137 - L1PA5 LINE L1 -2 6152 5938 295 126 3 0 chr3 89837022 89837117 -128200041 - L1PA3 LINE L1 -149 6023 5938 339 64 0 0 chr3 89837118 89837165 -128199993 - L1PA5 LINE L1 -170 5984 5938 334 85 0 0 chr3 89837166 89837213 -128199945 - L1PA5 LINE L1 -170 5984 5938 329 43 0 0 chr3 89837214 89837261 -128199897 - L1PA4 LINE L1 -171 5984 5938 329 43 0 0 chr3 89837262 89837309 -128199849 - L1PA4 LINE L1 -171 5984 5938 329 43 0 0 chr3 89837310 89837357 -128199801 - L1PA4 LINE L1 -171 5984 5938 824 174 207 30 chr3 89837376 89837646 -128199512 + MER33 DNA MER1_type 1 318 -6 359 367 81 7 chr3 89837746 89838043 -128199115 - L2 LINE L2 -1244 2070 1752 2361 58 3 0 chr3 89838077 89838370 -128198788 - AluY SINE Alu -17 294 1 268 323 129 0 chr3 89839645 89839800 -128197358 + MIR3 SINE MIR 8 182 -26 408 338 31 12 chr3 89842430 89842590 -128194568 - MIR SINE MIR -96 166 4 205 186 0 0 chr3 89844022 89844065 -128193093 + T-rich Low_complexity Low_complexity 5 47 0 29 106 0 0 chr3 89844107 89844220 -128192938 + AT_rich Low_complexity Low_complexity 1 113 0 1955 176 33 0 chr3 89844916 89845279 -128191879 - L1PB4 LINE L1 0 6156 5782 198 118 0 0 chr3 89845287 89845321 -128191837 + (TA)n Simple_repeat Simple_repeat 1 34 0 701 308 5 0 chr3 89845474 89845672 -128191486 - MIR SINE MIR -46 216 18 1628 216 21 60 chr3 89846248 89846733 -128190425 + MLT1C LTR MaLR 1 466 -1 285 75 0 0 chr3 89847049 89847089 -128190069 + (TC)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chr3 89847973 89847996 -128189162 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr3 89848583 89848612 -128188546 + AT_rich Low_complexity Low_complexity 1 29 0 821 196 12 36 chr3 89848902 89848965 -128188193 - MSTD LTR MaLR -232 164 101 2236 181 21 5 chr3 89848965 89849384 -128187774 + MSTB LTR MaLR 1 426 0 821 196 12 36 chr3 89849384 89849488 -128187670 - MSTD LTR MaLR -295 101 1 23 0 0 0 chr3 89849662 89849685 -128187473 + AT_rich Low_complexity Low_complexity 1 23 0 430 330 49 22 chr3 89849764 89849949 -128187209 - MIR SINE MIR -56 206 17 283 130 0 0 chr3 89850090 89850136 -128187022 + MADE1 DNA Mariner 35 80 0 358 306 46 28 chr3 89850675 89850870 -128186288 + MIR SINE MIR 33 231 -31 25 0 0 0 chr3 89850907 89850932 -128186226 + AT_rich Low_complexity Low_complexity 1 25 0 441 294 138 37 chr3 89851328 89851546 -128185612 + MIR SINE MIR 23 262 0 271 200 0 0 chr3 89852967 89853012 -128184146 - L2 LINE L2 -94 3178 3134 1523 45 5 5 chr3 89853202 89853400 -128183758 + L1PA5 LINE L1 5952 6149 -5 22 35 0 0 chr3 89854705 89854734 -128182424 + AT_rich Low_complexity Low_complexity 1 29 0 246 93 0 0 chr3 89854854 89854897 -128182261 + L1PA6 LINE L1 6112 6154 0 183 80 0 0 chr3 89855091 89855116 -128182042 + (TC)n Simple_repeat Simple_repeat 1 25 0 581 31 0 52 chr3 89855117 89855213 -128181945 + (TTCC)n Simple_repeat Simple_repeat 4 94 0 1984 136 7 16 chr3 89855227 89855537 -128181621 - AluSx SINE Alu -3 309 3 24 0 0 0 chr3 89856202 89856226 -128180932 + AT_rich Low_complexity Low_complexity 1 24 0 374 329 16 77 chr3 89857104 89857350 -128179808 + MIR SINE MIR 32 262 0 209 182 0 0 chr3 89857353 89857386 -128179772 - MIR3 SINE MIR -51 157 125 358 320 176 6 chr3 89857749 89858108 -128179050 - L1M4 LINE L1 -3381 2765 2346 1183 87 0 0 chr3 89858134 89858284 -128178874 - AluY SINE Alu -161 150 1 23 0 0 0 chr3 89860091 89860114 -128177044 + AT_rich Low_complexity Low_complexity 1 23 0 4971 146 15 4 chr3 89860114 89860917 -128176241 - L1PA16 LINE L1 -9 6157 5346 1985 128 44 0 chr3 89861075 89861372 -128175786 - AluSx SINE Alu -2 310 1 24 32 0 0 chr3 89862714 89862745 -128174413 + AT_rich Low_complexity Low_complexity 1 31 0 2278 106 0 0 chr3 89863148 89863450 -128173708 - AluSg SINE Alu -4 306 5 180 0 0 0 chr3 89863883 89863903 -128173255 + (TG)n Simple_repeat Simple_repeat 2 21 0 380 275 92 50 chr3 89865245 89865583 -128171575 + L1ME2 LINE L1 5374 5725 -2083 317 299 69 0 chr3 89865615 89865759 -128171399 + L1ME2 LINE L1 5786 5939 -225 1963 137 0 3 chr3 89867376 89867699 -128169459 - AluSx SINE Alu 0 322 1 2151 114 3 16 chr3 90068521 90068837 -127968321 + AluSq SINE Alu 2 313 0 6456 146 71 26 chr3 90071489 90072735 -127964423 - HSMAR2 DNA Mariner 0 1302 2 556 241 15 0 chr3 90074050 90074183 -127962975 - FLAM_C SINE Alu -6 137 3 190 157 78 0 chr3 90075041 90075143 -127962015 + (TA)n Simple_repeat Simple_repeat 2 111 0 11632 135 34 123 chr3 90075143 90077796 -127959362 - Tigger1 DNA MER2_type -1 2417 1 1919 148 14 0 chr3 90078509 90078810 -127958348 - AluSx SINE Alu 0 307 3 1959 122 7 7 chr3 90079506 90079800 -127957358 - AluY SINE Alu -17 294 1 262 310 70 49 chr3 90080293 90080435 -127956723 + MIR SINE MIR 44 188 -74 300 314 64 7 chr3 90080643 90080783 -127956375 - MIR SINE MIR -15 247 100 198 103 0 0 chr3 90081048 90081077 -127956081 + (A)n Simple_repeat Simple_repeat 1 29 0 248 328 42 8 chr3 90081582 90081701 -127955457 + L1ME LINE L1 323 445 -5625 702 65 0 11 chr3 90081819 90081912 -127955246 - L1PA5 LINE L1 -261 5894 5803 1873 59 31 8 chr3 90081912 90082165 -127954993 + L1PA5 LINE L1 5895 6154 0 26 0 0 0 chr3 90082698 90082724 -127954434 + GC_rich Low_complexity Low_complexity 1 26 0 275 200 0 0 chr3 90083341 90083386 -127953772 - L2 LINE L2 -94 3178 3134 1566 46 5 0 chr3 90083576 90083773 -127953385 + L1PA5 LINE L1 5952 6149 -5 212 253 0 38 chr3 90084482 90084561 -127952597 + (CCTA)n Simple_repeat Simple_repeat 4 79 0 22 35 0 0 chr3 90085187 90085216 -127951942 + AT_rich Low_complexity Low_complexity 1 29 0 242 93 0 0 chr3 90085336 90085379 -127951779 + L1PA6 LINE L1 6112 6154 0 1062 191 14 14 chr3 90085657 90085877 -127951281 - MLT2B2 LTR ERVL -295 220 1 342 0 0 0 chr3 90087903 90087941 -127949217 + (CA)n Simple_repeat Simple_repeat 2 39 0 284 246 14 0 chr3 90087962 90088031 -127949127 - MIR SINE MIR -13 249 180 749 262 71 48 chr3 90089139 90089475 -127947683 + L2 LINE L2 2879 3222 -91 215 290 16 0 chr3 90089886 90089948 -127947210 + CT-rich Low_complexity Low_complexity 2 64 0 391 260 21 161 chr3 90090011 90090346 -127946812 - L3 LINE CR1 -135 1442 1155 189 0 0 0 chr3 90090430 90090451 -127946707 + (CAT)n Simple_repeat Simple_repeat 2 22 0 243 352 12 3 chr3 90091847 90091958 -127945200 - MIR SINE MIR -77 131 21 321 323 15 15 chr3 90092396 90092526 -127944632 - MLT1J2 LTR MaLR -245 205 76 698 261 130 41 chr3 90093641 90094032 -127943126 + L1MC5 LINE L1 7017 7442 -519 23 0 0 0 chr3 90094829 90094852 -127942306 + AT_rich Low_complexity Low_complexity 1 23 0 207 182 0 0 chr3 90096169 90096202 -127940956 - MIR3 SINE MIR -51 157 125 1214 80 0 0 chr3 90096950 90097100 -127940058 - AluY SINE Alu -161 150 1 23 0 0 0 chr3 90098886 90098909 -127938249 + AT_rich Low_complexity Low_complexity 1 23 0 5000 144 15 4 chr3 90098909 90099712 -127937446 - L1PA16 LINE L1 -9 6157 5346 1997 131 44 0 chr3 90099870 90100167 -127936991 - AluSx SINE Alu -2 310 1 23 33 0 0 chr3 90101510 90101540 -127935618 + AT_rich Low_complexity Low_complexity 1 30 0 186 43 0 0 chr3 90101964 90101987 -127935171 + (TA)n Simple_repeat Simple_repeat 1 23 0 2168 91 0 18 chr3 90102279 90102564 -127934594 - AluSx SINE Alu -28 284 5 343 272 98 56 chr3 90104357 90104695 -127932463 + L1ME2 LINE L1 5374 5725 -2083 314 299 69 0 chr3 90104727 90104871 -127932287 + L1ME2 LINE L1 5786 5939 -225 2440 198 39 51 chr3 90106401 90106966 -127930192 - MER68 LTR ERV1 0 562 5 256 309 29 65 chr3 90107315 90107454 -127929704 + MIR SINE MIR 103 236 -26 2032 170 35 46 chr3 90107785 90108340 -127928818 - MLT2A2 LTR ERVL 0 554 1 525 253 177 5 chr3 90108732 90108918 -127928240 + MLT1E1 LTR MaLR 55 272 -382 953 198 46 5 chr3 90108981 90109178 -127927980 + MLT1E1 LTR MaLR 448 652 -2 24 0 0 0 chr3 90109727 90109751 -127927407 + GC_rich Low_complexity Low_complexity 1 24 0 217 254 17 0 chr3 90110114 90110173 -127926985 - MIR SINE MIR -118 144 85 282 283 87 0 chr3 90110475 90110567 -127926591 - MIR3 SINE MIR -105 103 4 393 181 74 17 chr3 90111823 90111946 -127925212 - MLT1D LTR MaLR 0 548 409 * 2936 156 8 12 chr3 90111938 90112443 -127924715 + MER75 DNA T2_type 12 514 0 1168 241 25 74 chr3 90112446 90112853 -127924305 - MLT1D LTR MaLR -118 387 1 243 298 161 37 chr3 90115249 90115410 -127921748 - MIR SINE MIR -32 230 50 210 357 36 24 chr3 90115538 90115622 -127921536 - MIR SINE MIR -102 106 22 23 0 0 0 chr3 90115692 90115715 -127921443 + AT_rich Low_complexity Low_complexity 1 23 0 185 94 31 0 chr3 90115917 90115949 -127921209 + (TA)n Simple_repeat Simple_repeat 2 34 0 396 0 0 0 chr3 90115980 90116024 -127921134 + (TC)n Simple_repeat Simple_repeat 2 45 0 283 59 20 20 chr3 90116023 90116074 -127921084 + (TA)n Simple_repeat Simple_repeat 1 51 0 * 465 68 0 80 chr3 90116238 90116326 -127920832 + L1PA16 LINE L1 6079 6159 -7 457 273 41 0 chr3 90116703 90116824 -127920334 + L2 LINE L2 3186 3311 -2 2598 97 27 10 chr3 90117100 90117511 -127919647 + L1MA1 LINE L1 5564 5981 -321 26 30 0 0 chr3 90118191 90118224 -127918934 + AT_rich Low_complexity Low_complexity 1 33 0 182 368 0 0 chr3 90118624 90118700 -127918458 - MIR SINE MIR -110 152 77 21 0 0 0 chr3 90119248 90119269 -127917889 + AT_rich Low_complexity Low_complexity 1 21 0 27 73 0 0 chr3 90119438 90119493 -127917665 + AT_rich Low_complexity Low_complexity 1 55 0 3170 140 69 2 chr3 90119709 90120245 -127916913 - LTR26 LTR ERV1 -31 572 1 210 355 138 11 chr3 90120245 90120434 -127916724 + L2 LINE L2 1371 1583 -1731 1545 222 3 7 chr3 90120684 90120990 -127916168 - AluJo SINE Alu -7 305 1 301 333 86 38 chr3 90121032 90121218 -127915940 + L2 LINE L2 2397 2591 -723 23 0 0 0 chr3 90121833 90121856 -127915302 + GC_rich Low_complexity Low_complexity 1 23 0 34 0 0 0 chr3 90121864 90121898 -127915260 + GC_rich Low_complexity Low_complexity 1 34 0 31 0 0 0 chr3 90121977 90122008 -127915150 + GC_rich Low_complexity Low_complexity 1 31 0 1689 175 0 17 chr3 90122362 90122659 -127914499 - AluJb SINE Alu -19 293 2 354 188 25 12 chr3 90122662 90122742 -127914416 - L1PA16 LINE L1 -132 6034 5954 413 296 35 60 chr3 90123189 90123583 -127913575 + L1ME LINE L1 482 881 -5189 294 244 0 0 chr3 90123939 90124021 -127913137 + (TA)n Simple_repeat Simple_repeat 2 83 0 8408 95 2 7 chr3 90124074 90126097 -127911061 - L1PA8 LINE L1 0 6172 4159 22 0 0 0 chr3 90127407 90127429 -127909729 + AT_rich Low_complexity Low_complexity 1 22 0 347 331 54 34 chr3 90127529 90127677 -127909481 - MIR SINE MIR -64 198 48 2127 118 13 0 chr3 90129395 90129699 -127907459 + AluSp SINE Alu 1 308 -5 316 333 0 54 chr3 90129876 90130005 -127907153 - L2 LINE L2 -2 3270 3149 290 366 48 33 chr3 90130049 90130380 -127906778 + L2 LINE L2 2336 2671 -643 268 314 0 14 chr3 90130618 90130688 -127906470 + L2 LINE L2 3148 3216 -56 854 321 98 26 chr3 90131090 90131936 -127905222 + L2 LINE L2 2274 3184 -129 21 71 0 0 chr3 90132041 90132083 -127905075 + AT_rich Low_complexity Low_complexity 1 42 0 1696 307 22 7 chr3 90133626 90134163 -127902995 - MLT1H1 LTR MaLR 0 555 11 237 108 0 0 chr3 90134253 90134290 -127902868 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 235 211 13 66 chr3 90134292 90134368 -127902790 - L2 LINE L2 -1 3312 3241 276 280 51 34 chr3 90134437 90134555 -127902603 - MIR SINE MIR -64 198 79 23 0 0 0 chr3 90134556 90134579 -127902579 + AT_rich Low_complexity Low_complexity 1 23 0 1474 232 129 27 chr3 90134791 90135239 -127901919 - MLT1H LTR MaLR -2 547 54 2409 187 58 30 chr3 90135239 90135275 -127901883 - MLT2B3 LTR ERVL 0 554 520 477 0 0 0 chr3 90135275 90135328 -127901830 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 2409 187 58 30 chr3 90135328 90135830 -127901328 - MLT2B3 LTR ERVL -34 520 1 223 179 30 0 chr3 90135928 90135995 -127901163 + (TA)n Simple_repeat Simple_repeat 2 70 0 203 219 68 68 chr3 90136490 90136563 -127900595 - L2 LINE L2 -952 2362 2290 1833 176 3 0 chr3 90136669 90136965 -127900193 - AluJb SINE Alu -15 297 1 698 335 116 52 chr3 90137272 90138000 -127899158 + L2 LINE L2 1558 2465 -849 1545 222 3 7 chr3 90138000 90138306 -127898852 - AluJo SINE Alu -7 305 1 698 335 116 52 chr3 90138306 90138728 -127898430 + L2 LINE L2 2465 2858 -456 1700 169 56 90 chr3 90138887 90139367 -127897791 + MLT1C LTR MaLR 2 465 -2 201 345 87 44 chr3 90139599 90139874 -127897284 - L2 LINE L2 -1269 2045 1759 357 309 127 5 chr3 90140477 90140697 -127896461 - MIR SINE MIR -14 248 2 319 346 123 6 chr3 90142123 90142302 -127894856 - L3b LINE CR1 -14 1569 1370 23 0 0 0 chr3 90143127 90143150 -127894008 + AT_rich Low_complexity Low_complexity 1 23 0 551 334 153 41 chr3 90143150 90143257 -127893901 + L2 LINE L2 1349 1443 -1871 423 0 0 0 chr3 90143257 90143304 -127893854 + (CA)n Simple_repeat Simple_repeat 1 47 0 551 334 153 41 chr3 90143304 90144192 -127892966 + L2 LINE L2 1443 2455 -859 328 325 19 1 chr3 90144652 90144769 -127892389 - MIR SINE MIR -62 146 38 386 113 0 14 chr3 90145048 90145119 -127892039 + (TA)n Simple_repeat Simple_repeat 1 70 0 2272 92 0 0 chr3 90145357 90145650 -127891508 - AluSc SINE Alu -16 293 1 241 330 80 0 chr3 90145881 90145993 -127891165 - MIR SINE MIR -56 206 86 228 367 25 8 chr3 90146983 90147103 -127890055 - MIR SINE MIR -8 254 133 258 349 95 0 chr3 90148390 90148516 -127888642 - MIR SINE MIR -76 186 49 803 179 7 7 chr3 90148743 90148894 -127888264 + MER4D LTR ERV1 1 151 -752 338 170 0 0 chr3 90148889 90148942 -127888216 + MER4B LTR ERV1 96 148 -462 * 310 204 0 0 chr3 90148941 90148995 -127888163 + MER4B LTR ERV1 95 148 -462 * 4281 169 26 27 chr3 90148994 90149805 -127887353 + MER4D LTR ERV1 94 903 0 848 254 113 32 chr3 90149976 90150287 -127886871 + MLT1E2 LTR MaLR 263 598 -28 1754 222 27 2 chr3 90150289 90150736 -127886422 + MER89 LTR ERV1 1 558 -1 1354 208 120 74 chr3 90150736 90151261 -127885897 - MER34C LTR ERV1 0 585 37 198 0 0 0 chr3 90152622 90152644 -127884514 + (A)n Simple_repeat Simple_repeat 1 22 0 472 318 108 14 chr3 90153885 90154108 -127883050 + LTR33 LTR ERVL 23 266 -255 540 279 34 29 chr3 90154599 90154807 -127882351 + LTR33 LTR ERVL 313 521 0 185 306 0 16 chr3 90155896 90155958 -127881200 + MIR SINE MIR 167 227 -35 382 312 63 5 chr3 90156373 90156562 -127880596 + LTR33 LTR ERVL 301 500 -21 296 320 57 17 chr3 90157410 90157585 -127879573 + MIR SINE MIR 50 231 -31 21 0 0 0 chr3 90157968 90157989 -127879169 + AT_rich Low_complexity Low_complexity 1 21 0 278 314 98 0 chr3 90158291 90158393 -127878765 - L2 LINE L2 -1 3271 3160 2371 140 57 5 chr3 90158567 90158974 -127878184 + MSTA LTR MaLR 1 428 0 1264 196 26 16 chr3 90159314 90159702 -127877456 + LTR47B LTR ERVL 1 443 0 824 203 29 41 chr3 90159895 90160137 -127877021 + LTR37A LTR ERV1 176 414 -12 22 35 0 0 chr3 90162874 90162903 -127874255 + AT_rich Low_complexity Low_complexity 1 29 0 212 340 73 27 chr3 90162912 90163062 -127874096 - L2 LINE L2 0 3272 3116 28 0 0 0 chr3 90163170 90163198 -127873960 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr3 90163576 90163597 -127873561 + (TC)n Simple_repeat Simple_repeat 1 21 0 250 176 44 29 chr3 90164593 90164661 -127872497 - MLT2B1 LTR ERVL 0 520 452 921 166 0 0 chr3 90164692 90164837 -127872321 - MLT2B2 LTR ERVL -370 145 1 911 151 25 0 chr3 90164838 90164997 -127872161 - ERVL-B2 LTR ERVL -9 5755 5593 288 174 0 58 chr3 90164998 90165067 -127872091 + MSTD LTR MaLR 2 66 -362 41865 46 1 3 chr3 90165067 90171072 -127866086 + L1PA4 LINE L1 159 6155 0 801 222 66 33 chr3 90171087 90171389 -127865769 + MSTD LTR MaLR 45 396 0 2067 172 44 12 chr3 90171390 90172009 -127865149 - ERVL-B2 LTR ERVL -168 5596 4801 289 196 0 0 chr3 90172005 90172056 -127865102 - ERVL-B2 LTR ERVL -913 4851 4801 * 304 206 1 0 chr3 90172052 90172150 -127865008 - ERVL-B2 LTR ERVL -913 4851 4762 273 216 0 0 chr3 90172146 90172197 -127864961 - ERVL-B2 LTR ERVL -913 4851 4801 * 3811 184 16 9 chr3 90172193 90172878 -127864280 - ERVL-B2 LTR ERVL -913 4851 4162 1600 142 12 83 chr3 90172879 90173204 -127863954 - MER50 LTR ERV1 0 734 433 1382 119 9 23 chr3 90173205 90173423 -127863735 - MER50 LTR ERV1 -503 231 17 2751 228 19 25 chr3 90173434 90173492 -127863666 - ERVL-B3 LTR ERVL -4654 1110 1053 1977 143 0 0 chr3 90173492 90173786 -127863372 - AluSx SINE Alu -18 294 1 2751 228 19 25 chr3 90173786 90174720 -127862438 - ERVL-B3 LTR ERVL -4711 1053 172 403 220 22 0 chr3 90174801 90174892 -127862266 + MLT2B2 LTR ERVL 423 515 0 1653 280 33 7 chr3 90174964 90175392 -127861766 - MLT2B3 LTR ERVL -110 444 6 1706 185 7 3 chr3 90176164 90176451 -127860707 + AluJb SINE Alu 1 288 -24 198 0 0 0 chr3 90176457 90176479 -127860679 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 213 143 0 24 chr3 90177083 90177125 -127860033 + (TG)n Simple_repeat Simple_repeat 2 42 0 193 333 0 21 chr3 90177188 90177281 -127859877 + MIR3 SINE MIR 106 196 -12 804 192 0 71 chr3 90179589 90179771 -127857387 + FRAM SINE Alu 1 161 -15 1722 253 35 7 chr3 90181445 90181899 -127855259 + MLT1C LTR MaLR 1 467 0 344 294 138 36 chr3 90183445 90183720 -127853438 + L2 LINE L2 1221 1523 -1791 1951 142 3 7 chr3 90183872 90184175 -127852983 - AluSq SINE Alu -11 302 1 4538 138 35 8 chr3 90184543 90185138 -127852020 - L1PA15 LINE L1 -3 6162 5540 515 125 0 0 chr3 90185138 90185218 -127851940 + MADE1 DNA Mariner 1 80 0 4538 138 35 8 chr3 90185218 90185389 -127851769 - L1PA15 LINE L1 -625 5540 5375 1303 234 62 12 chr3 90185469 90185807 -127851351 + MLT1C-int LTR MaLR 1015 1369 -2 272 296 26 9 chr3 90185822 90185937 -127851221 + MLT1C LTR MaLR 11 127 -340 761 246 109 12 chr3 90186023 90186271 -127850887 + MLT1C LTR MaLR 196 467 0 23 20 0 61 chr3 90186874 90186923 -127850235 + AT_rich Low_complexity Low_complexity 1 46 0 211 333 87 0 chr3 90188336 90188405 -127848753 - L2 LINE L2 -12 3260 3186 23 0 0 0 chr3 90188463 90188486 -127848672 + AT_rich Low_complexity Low_complexity 1 23 0 1392 181 43 40 chr3 90188906 90189231 -127847927 - THE1C LTR MaLR 0 375 50 364 235 0 0 chr3 90189229 90189310 -127847848 - THE1C LTR MaLR -245 130 50 * 403 235 0 0 chr3 90189308 90189389 -127847769 - THE1C LTR MaLR -245 130 50 375 247 0 0 chr3 90189387 90189468 -127847690 - THE1C LTR MaLR -245 130 50 * 707 189 0 15 chr3 90189466 90189598 -127847560 - THE1C LTR MaLR -245 130 1 239 308 39 26 chr3 90189609 90189687 -127847471 - L2 LINE L2 -620 2694 2616 516 281 134 6 chr3 90189701 90189865 -127847293 + MER5A DNA MER1_type 5 189 0 241 183 14 14 chr3 90190081 90190152 -127847006 + (TA)n Simple_repeat Simple_repeat 1 71 0 1819 80 8 0 chr3 90190866 90191116 -127846042 - L1PA7 LINE L1 -3 6151 5900 194 162 27 0 chr3 90191571 90191608 -127845550 + L3 LINE CR1 1526 1563 -14 519 264 8 8 chr3 90192098 90192219 -127844939 - L2 LINE L2 -3 3310 3190 626 260 62 84 chr3 90192970 90193328 -127843830 + LTR16A1 LTR ERVL 69 418 -39 1522 177 7 18 chr3 90193335 90193618 -127843540 + AluJb SINE Alu 1 280 -32 181 0 69 0 chr3 90193622 90193651 -127843507 + (CAA)n Simple_repeat Simple_repeat 1 31 0 573 274 106 14 chr3 90194745 90194953 -127842205 - MIR SINE MIR 0 262 36 422 359 60 8 chr3 90195051 90195316 -127841842 + MLT1J LTR MaLR 179 457 -54 183 371 126 17 chr3 90195374 90195549 -127841609 + MIR3 SINE MIR 4 197 -11 238 384 0 16 chr3 90195992 90196117 -127841041 + L2 LINE L2 3191 3313 0 22 0 0 0 chr3 90196259 90196281 -127840877 + AT_rich Low_complexity Low_complexity 1 22 0 536 378 27 30 chr3 90197846 90198214 -127838944 + L2 LINE L2 2421 2787 -527 182 419 19 0 chr3 90198347 90198452 -127838706 + L2 LINE L2 2941 3047 -225 7706 20 5 0 chr3 90198452 90199386 -127837772 + L1PA2 LINE L1 5218 6155 0 654 296 50 53 chr3 90199899 90200260 -127836898 - MER110 LTR ERV1 -36 455 96 379 270 44 29 chr3 90200620 90200757 -127836401 + MER103 DNA DNA 21 159 -7 349 269 144 30 chr3 90201296 90201463 -127835695 + MIR SINE MIR 61 246 -16 298 330 170 7 chr3 90202567 90202855 -127834303 - L2 LINE L2 -1 3312 2978 263 188 0 0 chr3 90203229 90203277 -127833881 - MLT2C1 LTR ERVL 0 414 367 258 237 0 0 chr3 90203396 90203472 -127833686 + (CATATA)n Simple_repeat Simple_repeat 1 76 0 315 0 0 0 chr3 90203490 90203525 -127833633 + (CA)n Simple_repeat Simple_repeat 2 36 0 1569 191 44 9 chr3 90203548 90203863 -127833295 - MLT2C1 LTR ERVL -57 340 15 1467 220 11 3 chr3 90203999 90204304 -127832854 - AluJo SINE Alu 0 307 1 1030 204 50 60 chr3 90205365 90205467 -127831691 + L1MD2 LINE L1 6044 6145 -214 189 0 0 0 chr3 90205467 90205488 -127831670 + (GA)n Simple_repeat Simple_repeat 2 22 0 1030 204 50 60 chr3 90205488 90205703 -127831455 + L1MD2 LINE L1 6145 6358 -1 268 337 181 21 chr3 90205704 90205992 -127831166 - L2 LINE L2 -800 2514 2181 1413 201 0 39 chr3 90206748 90207031 -127830127 + AluJo SINE Alu 1 272 -40 486 0 0 0 chr3 90207031 90207085 -127830073 + (TC)n Simple_repeat Simple_repeat 1 54 0 231 36 0 0 chr3 90207084 90207112 -127830046 + (CA)n Simple_repeat Simple_repeat 1 28 0 * 1572 176 4 18 chr3 90207156 90207428 -127829730 + AluJb SINE Alu 1 268 -44 1882 189 50 13 chr3 90207441 90207822 -127829336 - MSTA LTR MaLR 0 428 34 255 184 0 0 chr3 90207879 90207940 -127829218 - MSTA LTR MaLR -365 62 1 251 0 0 56 chr3 90209869 90209905 -127827253 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1501 282 39 20 chr3 90210200 90210707 -127826451 + LTR40a LTR ERVL 3 519 0 197 350 52 16 chr3 90211043 90211237 -127825921 - L2 LINE L2 -1239 2075 1875 459 224 51 19 chr3 90211339 90211604 -127825554 - LTR37A LTR ERV1 0 468 51 315 0 0 0 chr3 90211900 90211935 -127825223 + (TG)n Simple_repeat Simple_repeat 2 36 0 26 101 0 0 chr3 90212308 90212397 -127824761 + AT_rich Low_complexity Low_complexity 1 89 0 328 259 138 96 chr3 90213463 90213702 -127823456 - MER102b DNA MER1_type -9 332 84 1452 204 28 11 chr3 90213969 90214254 -127822904 - AluJo SINE Alu -22 290 1 4181 78 0 0 chr3 90214427 90214978 -127822180 + L1PA8 LINE L1 5619 6169 -3 195 409 73 0 chr3 90215335 90215499 -127821659 - MIR3 SINE MIR -1 207 32 352 303 120 7 chr3 90216353 90216495 -127820663 - MIR SINE MIR -62 200 43 960 162 12 6 chr3 90216797 90216970 -127820188 - L1 LINE L1 -2203 3943 3770 268 311 0 11 chr3 90217092 90217182 -127819976 + MER58 DNA MER1_type 177 265 -2155 182 216 27 0 chr3 90217380 90217417 -127819741 - MIR SINE MIR -133 129 92 229 326 52 57 chr3 90218584 90218777 -127818381 + MIR SINE MIR 71 262 0 934 209 0 36 chr3 90218794 90218990 -127818168 + AluJo SINE Alu 83 271 -41 282 56 0 0 chr3 90218999 90219035 -127818123 + (GGGGA)n Simple_repeat Simple_repeat 5 40 0 1033 228 99 54 chr3 90219076 90219449 -127817709 - MLT1B LTR MaLR 0 390 1 1874 136 0 0 chr3 90219757 90220052 -127817106 + L1MA3 LINE L1 6011 6305 0 222 372 77 33 chr3 90220612 90220886 -127816272 + L3b LINE CR1 1277 1562 -21 237 342 84 32 chr3 90221523 90221678 -127815480 + MIR3 SINE MIR 21 183 -25 2135 109 0 0 chr3 90223114 90223397 -127813761 + AluSg SINE Alu 1 283 -27 604 90 66 0 chr3 90223412 90223579 -127813579 + (TA)n Simple_repeat Simple_repeat 2 179 0 619 82 59 6 chr3 90223598 90223768 -127813390 + (TA)n Simple_repeat Simple_repeat 2 180 0 42 0 0 0 chr3 90223768 90223810 -127813348 + AT_rich Low_complexity Low_complexity 1 42 0 301 167 45 0 chr3 90223810 90223876 -127813282 - L1MC4 LINE L1 -1338 6704 6636 921 207 165 83 chr3 90224098 90224143 -127813015 - MSTD LTR MaLR -2 394 354 2166 92 7 149 chr3 90224143 90224580 -127812578 - THE1C LTR MaLR 0 375 1 921 207 165 83 chr3 90224580 90224897 -127812261 - MSTD LTR MaLR -42 354 2 690 11 23 0 chr3 90225005 90225092 -127812066 + L1PA4 LINE L1 6067 6155 0 2258 94 3 3 chr3 90225288 90225587 -127811571 + AluSg SINE Alu 1 299 -11 214 281 202 9 chr3 90226210 90226324 -127810834 + MIR3 SINE MIR 66 201 -7 280 164 0 36 chr3 90227010 90227065 -127810093 + MER3 DNA MER1_type 38 90 -119 * 712 223 109 5 chr3 90227028 90227212 -127809946 - MER3 DNA MER1_type -6 203 1 3851 126 24 13 chr3 90227586 90228223 -127808935 - Tigger4(Zombi) DNA MER2_type -34 2697 2054 22 0 0 0 chr3 90228517 90228539 -127808619 + AT_rich Low_complexity Low_complexity 1 22 0 181 278 19 0 chr3 90229331 90229385 -127807773 + L3 LINE CR1 827 881 -696 189 156 31 16 chr3 90229815 90229879 -127807279 + (TA)n Simple_repeat Simple_repeat 2 66 0 203 73 122 0 chr3 90230468 90230509 -127806649 + (CATAA)n Simple_repeat Simple_repeat 5 50 0 1083 242 55 36 chr3 90230974 90231304 -127805854 + MLT1A2 LTR MaLR 4 339 -35 434 341 12 0 chr3 90231637 90231801 -127805357 + L1ME LINE L1 5506 5671 -450 248 235 12 62 chr3 90232625 90232706 -127804452 + L2 LINE L2 3232 3308 -5 188 33 0 33 chr3 90233701 90233731 -127803427 + (TTTTA)n Simple_repeat Simple_repeat 1 29 0 25 51 0 0 chr3 90233733 90233772 -127803386 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr3 90233813 90233842 -127803316 + AT_rich Low_complexity Low_complexity 1 29 0 243 161 0 0 chr3 90233844 90233900 -127803258 + (TA)n Simple_repeat Simple_repeat 1 56 0 22 0 0 0 chr3 90235861 90235883 -127801275 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr3 90236205 90236239 -127800919 + AT_rich Low_complexity Low_complexity 1 34 0 271 382 39 0 chr3 90236703 90236805 -127800353 - L2 LINE L2 -16 3256 3151 661 304 97 24 chr3 90237581 90237870 -127799288 + MLT1I LTR MaLR 98 407 -2 2275 114 0 13 chr3 90238015 90238331 -127798827 - AluSx SINE Alu 0 312 1 686 230 173 18 chr3 90238379 90238605 -127798553 + MIR SINE MIR 2 262 0 22 0 0 0 chr3 90238756 90238778 -127798380 + AT_rich Low_complexity Low_complexity 1 22 0 10355 209 23 25 chr3 90239214 90242881 -127794277 - L1PA15 LINE L1 -1 6164 2509 22 35 0 0 chr3 90243458 90243487 -127793671 + AT_rich Low_complexity Low_complexity 1 29 0 1575 210 52 20 chr3 90244629 90245132 -127792026 - MER52A LTR ERV1 -681 597 25 24 32 0 0 chr3 90245929 90245960 -127791198 + AT_rich Low_complexity Low_complexity 1 31 0 254 342 26 0 chr3 90246481 90246557 -127790601 + MIR SINE MIR 69 146 -62 831 236 125 30 chr3 90246715 90247124 -127790034 + MLT1C LTR MaLR 5 467 0 185 200 0 0 chr3 90247926 90247956 -127789202 - MIR SINE MIR -61 147 118 227 269 0 0 chr3 90247976 90248028 -127789130 + MIR SINE MIR 97 148 -60 198 0 0 0 chr3 90248438 90248460 -127788698 + (A)n Simple_repeat Simple_repeat 1 22 0 204 213 0 21 chr3 90248986 90249033 -127788125 + GA-rich Low_complexity Low_complexity 6 51 0 607 259 54 6 chr3 90249335 90249501 -127787657 - MIR SINE MIR -33 229 56 1229 305 83 58 chr3 90249737 90250711 -127786447 - L2 LINE L2 -3 3310 2316 910 283 38 2 chr3 90250720 90250990 -127786168 - MLT1E2 LTR MaLR -8 618 302 186 167 0 0 chr3 90251340 90251376 -127785782 + (TA)n Simple_repeat Simple_repeat 1 36 0 27 81 0 0 chr3 90251408 90251470 -127785688 + AT_rich Low_complexity Low_complexity 1 62 0 290 351 62 77 chr3 90251826 90252085 -127785073 + L3 LINE CR1 1089 1343 -234 655 300 143 47 chr3 90252410 90252817 -127784341 + MLT1J LTR MaLR 1 446 -65 1638 198 74 0 chr3 90253248 90253572 -127783586 + MER7A DNA MER2_type 1 346 0 32 0 0 0 chr3 90253684 90253716 -127783442 + AT_rich Low_complexity Low_complexity 1 32 0 699 29 38 19 chr3 90255438 90255543 -127781615 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 1739 166 10 7 chr3 90255854 90256149 -127781009 + AluJo SINE Alu 17 312 0 2035 138 0 0 chr3 90256210 90256501 -127780657 + AluSg SINE Alu 1 291 -19 267 109 15 0 chr3 90256542 90256597 -127780561 + Alu SINE Alu 256 299 -1 897 226 5 32 chr3 90256631 90256852 -127780306 - MER20 DNA MER1_type 0 219 5 230 306 139 19 chr3 90257412 90257520 -127779638 + L2 LINE L2 3193 3313 0 369 335 110 39 chr3 90257531 90258043 -127779115 + L2 LINE L2 2524 3083 -189 199 349 238 0 chr3 90258443 90258615 -127778543 + MIR SINE MIR 50 262 0 350 176 122 171 chr3 90258692 90258828 -127778330 + MIR SINE MIR 7 129 -133 2266 113 0 0 chr3 90258828 90259137 -127778021 + AluSg SINE Alu 1 309 -1 350 176 122 171 chr3 90259137 90259222 -127777936 + MIR SINE MIR 129 217 -45 1806 148 11 4 chr3 90260571 90260848 -127776310 - AluJb SINE Alu -28 284 6 2746 134 7 12 chr3 90265207 90265639 -127771519 + Tigger2a DNA MER2_type 2 431 -3 4385 120 54 31 chr3 90266561 90267620 -127769538 - MER11A LTR ERVK 0 1071 1 202 333 107 19 chr3 90267791 90267950 -127769208 + L2 LINE L2 3140 3312 -1 21 0 0 0 chr3 90268820 90268841 -127768317 + AT_rich Low_complexity Low_complexity 1 21 0 209 256 0 0 chr3 90269180 90269223 -127767935 + (CA)n Simple_repeat Simple_repeat 2 44 0 201 156 0 0 chr3 90271738 90271770 -127765388 - L2 LINE L2 0 3272 3241 1938 75 68 0 chr3 90271967 90272232 -127764926 + AluSc SINE Alu 1 307 0 217 0 0 0 chr3 90272232 90272256 -127764902 + (CAA)n Simple_repeat Simple_repeat 2 180 0 407 68 17 0 chr3 90272896 90272955 -127764203 + (TA)n Simple_repeat Simple_repeat 1 60 0 22 0 0 0 chr3 90273359 90273381 -127763777 + AT_rich Low_complexity Low_complexity 1 22 0 239 308 48 18 chr3 90273653 90273823 -127763335 + MIR SINE MIR 44 252 -10 342 0 0 0 chr3 90273870 90273908 -127763250 + (CA)n Simple_repeat Simple_repeat 2 39 0 285 246 14 0 chr3 90273929 90273998 -127763160 - MIR SINE MIR -13 249 180 2104 60 4 0 chr3 90275592 90275859 -127761299 + AluY SINE Alu 37 304 -7 23 0 0 0 chr3 90276183 90276206 -127760952 + AT_rich Low_complexity Low_complexity 1 23 0 308 237 39 45 chr3 90277142 90277298 -127759860 + (CATATA)n Simple_repeat Simple_repeat 3 157 0 207 0 0 0 chr3 90277335 90277358 -127759800 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2524 30 0 0 chr3 90277358 90277658 -127759500 - L1PA3 LINE L1 -8 6147 5848 228 36 0 0 chr3 90277658 90277686 -127759472 + L1P1 LINE L1 5773 5800 -355 397 279 21 7 chr3 90277759 90277899 -127759259 - L1ME LINE L1 -439 5682 5541 28 0 0 0 chr3 90278000 90278028 -127759130 + AT_rich Low_complexity Low_complexity 1 28 0 235 357 45 27 chr3 90278819 90278931 -127758227 + L3 LINE CR1 1352 1465 -112 740 72 0 0 chr3 90279214 90279311 -127757847 + AluY SINE Alu 39 135 -176 2386 53 3 0 chr3 90279312 90279612 -127757546 + AluY SINE Alu 3 303 -8 298 42 42 0 chr3 90279615 90279663 -127757495 + (TA)n Simple_repeat Simple_repeat 2 51 0 1913 139 3 0 chr3 90279945 90280246 -127756912 - AluSx SINE Alu -7 305 4 2064 110 21 3 chr3 90282422 90282712 -127754446 - AluSx SINE Alu -14 298 4 852 257 11 6 chr3 90283632 90283815 -127753343 - MER5A DNA MER1_type 0 189 6 532 310 39 21 chr3 90283843 90284056 -127753102 + MIR SINE MIR 39 253 -9 1007 54 0 1 chr3 90284426 90284547 -127752611 - L1PA5 LINE L1 -343 5812 5691 2649 54 3 0 chr3 90284547 90284880 -127752278 + L1PA5 LINE L1 5815 6148 -6 1007 54 0 1 chr3 90284880 90284904 -127752254 - L1P4 LINE L1 -464 5691 5668 355 323 21 48 chr3 90284933 90285119 -127752039 + L2 LINE L2 3133 3313 0 704 183 24 0 chr3 90285768 90285894 -127751264 - FLAM_C SINE Alu -10 133 5 2299 88 10 3 chr3 90285905 90286213 -127750945 - AluSx SINE Alu -2 310 1 21 57 0 0 chr3 90286220 90286255 -127750903 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 90286268 90286291 -127750867 + AT_rich Low_complexity Low_complexity 1 23 0 2518 31 3 0 chr3 90286314 90286607 -127750551 - AluY SINE Alu -17 294 1 468 303 160 27 chr3 90286765 90287177 -127749981 - MLT1J LTR MaLR -42 469 3 1177 224 15 26 chr3 90289139 90289411 -127747747 + AluJo SINE Alu 14 282 -30 65 61 0 0 chr3 90289411 90289525 -127747633 + AT_rich Low_complexity Low_complexity 1 114 0 596 250 65 0 chr3 90292075 90292243 -127744915 + MER58C DNA MER1_type 22 200 -15 530 336 37 9 chr3 90292278 90292495 -127744663 - MLT1J2 LTR MaLR -198 252 30 574 291 47 0 chr3 90292774 90292946 -127744212 - HERVL40 LTR ERVL -5350 180 1 1705 233 58 32 chr3 90292949 90293412 -127743746 - LTR40a LTR ERVL -2 517 43 578 77 0 0 chr3 90294264 90294342 -127742816 - MADE1 DNA Mariner -2 78 1 243 88 0 0 chr3 90296157 90296191 -127740967 + (T)n Simple_repeat Simple_repeat 1 34 0 692 57 0 0 chr3 90296981 90297069 -127740089 - AluY SINE Alu -14 297 210 563 344 52 17 chr3 90300058 90300288 -127736870 - MIR SINE MIR -2 260 23 1247 208 11 26 chr3 90300343 90300607 -127736551 - LTR40b LTR ERVL 0 462 203 21 36 0 0 chr3 90350905 90350933 -127686225 + AT_rich Low_complexity Low_complexity 1 28 0 26 64 0 0 chr3 90350946 90350993 -127686165 + AT_rich Low_complexity Low_complexity 1 47 0 267 114 0 0 chr3 90351335 90351379 -127685779 + (TA)n Simple_repeat Simple_repeat 1 44 0 817 169 0 150 chr3 90351963 90352229 -127684929 + L1MB5 LINE L1 5614 5839 -335 2059 213 74 4 chr3 90352229 90352726 -127684432 - MER34 LTR ERV1 0 542 11 1789 191 3 0 chr3 90352735 90353071 -127684087 + L1MB5 LINE L1 5838 6174 0 257 300 177 15 chr3 90354181 90354311 -127682847 + MIR SINE MIR 80 230 -32 1758 291 135 20 chr3 90354554 90355364 -127681794 + L2 LINE L2 2122 3028 -285 1372 210 4 4 chr3 90355364 90355631 -127681527 - AluJb SINE Alu -44 268 2 1330 228 37 54 chr3 90355694 90356102 -127681056 + MLT2C2 LTR ERVL 1 401 -63 450 283 29 46 chr3 90356102 90356275 -127680883 + L2 LINE L2 3108 3277 -36 1273 196 45 16 chr3 90356415 90356727 -127680431 + L1MA8 LINE L1 5967 6287 -4 2082 109 3 23 chr3 90356820 90357122 -127680036 - AluSg SINE Alu -13 297 2 21 43 0 22 chr3 90358237 90358264 -127678894 + AT_rich Low_complexity Low_complexity 1 28 -17 1714 166 28 0 chr3 90358264 90358548 -127678610 - AluJb SINE Alu -19 293 2 21 43 0 22 chr3 90358548 90358566 -127678592 + AT_rich Low_complexity Low_complexity 28 45 0 197 65 32 0 chr3 90359623 90359654 -127677504 + (TCCC)n Simple_repeat Simple_repeat 1 32 0 480 239 64 9 chr3 90359655 90359764 -127677394 - L2 LINE L2 -6 3307 3193 1212 201 80 43 chr3 90360235 90360584 -127676574 - MLT1A1 LTR MaLR -3 362 1 28 48 0 0 chr3 90360665 90360707 -127676451 + AT_rich Low_complexity Low_complexity 1 42 0 375 308 62 0 chr3 90360715 90360845 -127676313 + L2 LINE L2 3173 3310 -3 * 512 317 62 26 chr3 90360821 90361048 -127676110 - MIR SINE MIR -5 257 23 202 404 35 23 chr3 90361160 90361331 -127675827 - L2 LINE L2 -530 2784 2612 2403 60 0 0 chr3 90361551 90361836 -127675322 - AluY SINE Alu -10 301 17 304 247 26 0 chr3 90364315 90364392 -127672766 + MIR SINE MIR 183 261 -1 21 36 0 0 chr3 90364392 90364420 -127672738 + AT_rich Low_complexity Low_complexity 1 28 0 1869 122 38 21 chr3 90364820 90365107 -127672051 - AluSg SINE Alu -18 292 1 475 248 66 8 chr3 90366429 90366550 -127670608 + MER5B DNA MER1_type 21 148 -30 5624 44 8 0 chr3 90367258 90367961 -127669197 - L1PA3 LINE L1 -3829 2317 1609 24942 36 0 0 chr3 90367961 90371787 -127665371 + L1PA3 LINE L1 2322 6155 0 21 71 0 0 chr3 90371925 90371967 -127665191 + AT_rich Low_complexity Low_complexity 1 42 0 254 221 98 0 chr3 90372029 90372151 -127665007 + (TTTAG)n Simple_repeat Simple_repeat 2 135 0 31 44 0 0 chr3 90373969 90374014 -127663144 + AT_rich Low_complexity Low_complexity 1 45 0 371 349 0 0 chr3 90374904 90375010 -127662148 - MIR SINE MIR -33 229 124 1641 268 128 18 chr3 90375734 90376290 -127660868 - MLT1E2 LTR MaLR 0 626 10 227 219 0 0 chr3 90376423 90376464 -127660694 - MLT1D LTR MaLR -464 41 1 21 36 0 0 chr3 90376669 90376697 -127660461 + AT_rich Low_complexity Low_complexity 1 28 0 199 362 53 32 chr3 90377249 90377343 -127659815 + MIR SINE MIR 28 123 -139 205 307 147 60 chr3 90379845 90379995 -127657163 - MIR3 SINE MIR -38 170 8 515 322 68 72 chr3 90380135 90380780 -127656378 + L2 LINE L2 2672 3304 -9 1309 140 13 38 chr3 90381121 90381357 -127655801 - MER30 DNA MER1_type 0 230 1 344 340 35 0 chr3 90382914 90383055 -127654103 + MIR SINE MIR 13 158 -104 272 304 183 26 chr3 90384517 90384632 -127652526 - L2 LINE L2 -1 3271 3139 2500 90 5 38 chr3 90385258 90385625 -127651533 - THE1A LTR MaLR 0 355 1 10811 92 30 15 chr3 90385625 90387181 -127649977 - THE1A-int LTR MaLR 0 1580 1 2603 88 8 3 chr3 90387181 90387534 -127649624 - THE1A LTR MaLR 0 355 1 3080 11 0 6 chr3 90387721 90388078 -127649080 + L1PA2 LINE L1 5799 6153 -2 221 0 0 33 chr3 90389461 90389491 -127647667 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 245 371 35 9 chr3 90390499 90390615 -127646543 - MIR3 SINE MIR -37 171 53 584 77 0 0 chr3 90391196 90391274 -127645884 + MADE1 DNA Mariner 1 78 -2 639 274 92 53 chr3 90391361 90391530 -127645628 + MER93a LTR ERV1 63 224 -178 294 29 0 0 chr3 90391530 90391565 -127645593 + (GA)n Simple_repeat Simple_repeat 2 36 0 2009 107 15 0 chr3 90391566 90391836 -127645322 - AluSc SINE Alu -35 274 1 639 274 92 53 chr3 90391836 90391967 -127645191 + MER93a LTR ERV1 223 377 -25 762 183 8 0 chr3 90393482 90393613 -127643545 - FLAM_C SINE Alu -11 132 1 24 0 0 0 chr3 90394416 90394440 -127642718 + AT_rich Low_complexity Low_complexity 1 24 0 2099 125 3 0 chr3 90394743 90395038 -127642120 + AluSp SINE Alu 1 296 -17 680 224 112 5 chr3 90397307 90397530 -127639628 + Charlie4 DNA MER1_type 20 266 -1695 1651 202 29 48 chr3 90397686 90398141 -127639017 + L1MA10 LINE L1 5876 6321 -13 297 345 149 12 chr3 90398322 90398575 -127638583 + L2 LINE L2 2793 3081 -191 357 143 20 112 chr3 90398588 90398686 -127638472 + MER53 DNA DNA 101 189 0 474 33 0 0 chr3 90398787 90398847 -127638311 + (TG)n Simple_repeat Simple_repeat 2 61 0 228 273 15 45 chr3 90398849 90398915 -127638243 + L2 LINE L2 3193 3256 -16 22 35 0 0 chr3 90401303 90401332 -127635826 + AT_rich Low_complexity Low_complexity 1 29 0 251 339 36 36 chr3 90402350 90402462 -127634696 - L2 LINE L2 -15 3257 3146 270 73 0 0 chr3 90402464 90402505 -127634653 + (CA)n Simple_repeat Simple_repeat 1 41 0 196 244 61 49 chr3 90402661 90402743 -127634415 + MIR SINE MIR 167 249 -13 194 324 0 56 chr3 90404035 90404106 -127633052 + L2 LINE L2 3206 3272 0 30 59 0 0 chr3 90404177 90404228 -127632930 + AT_rich Low_complexity Low_complexity 1 51 0 1668 260 88 30 chr3 90405620 90406123 -127631035 - MLT1F LTR MaLR 0 542 11 316 206 10 21 chr3 90406143 90406240 -127630918 + GA-rich Low_complexity Low_complexity 4 99 0 611 194 82 6 chr3 90406577 90406747 -127630411 + MER53 DNA DNA 6 188 -1 198 0 0 0 chr3 90409457 90409479 -127627679 + (CA)n Simple_repeat Simple_repeat 2 23 0 815 11 0 0 chr3 90409501 90409596 -127627562 - L1PA2 LINE L1 -3 6152 6058 288 0 0 0 chr3 90411708 90411740 -127625418 + (CA)n Simple_repeat Simple_repeat 1 32 0 399 283 51 14 chr3 90412433 90412571 -127624587 - L2 LINE L2 0 3313 3171 189 280 102 25 chr3 90412746 90412864 -127624294 - L2 LINE L2 -213 3059 2933 436 324 29 8 chr3 90413184 90413418 -127623740 + MLT1E LTR MaLR 20 300 -249 1644 40 0 0 chr3 90413548 90413746 -127623412 - L1PA5 LINE L1 0 6154 5957 727 332 38 6 chr3 90413748 90414061 -127623097 - LTR16C LTR ERVL -53 438 116 1470 215 63 0 chr3 90415833 90416135 -127621023 + Tigger7 DNA MER2_type 1 321 -2166 870 180 23 12 chr3 90416155 90416218 -127620940 + Tigger7 DNA MER2_type 2313 2374 -113 2330 171 39 0 chr3 90416218 90416634 -127620524 - MSTB1 LTR MaLR 0 432 1 870 180 23 12 chr3 90416634 90416742 -127620416 + Tigger7 DNA MER2_type 2374 2486 -1 247 266 0 0 chr3 90416743 90416807 -127620351 + (CTA)n Simple_repeat Simple_repeat 2 65 0 387 335 25 12 chr3 90416979 90417140 -127620018 + MER5A DNA MER1_type 27 189 0 26 30 0 0 chr3 90417250 90417283 -127619875 + AT_rich Low_complexity Low_complexity 1 33 0 2073 90 0 48 chr3 90417283 90417572 -127619586 - AluSg SINE Alu -32 278 4 1886 146 48 38 chr3 90417690 90418061 -127619097 - THE1C LTR MaLR 0 375 1 14953 42 1 1 chr3 90418764 90421353 -127615805 + L1PA4 LINE L1 3567 6155 0 226 176 0 20 chr3 90421362 90421413 -127615745 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 22 0 0 0 chr3 90421423 90421445 -127615713 + AT_rich Low_complexity Low_complexity 1 22 0 416 262 171 6 chr3 90422000 90422164 -127614994 - MIR SINE MIR -5 257 67 21 36 0 0 chr3 90423721 90423749 -127613409 + AT_rich Low_complexity Low_complexity 1 28 0 610 200 0 0 chr3 90423803 90423913 -127613245 - FLAM_A SINE Alu -32 110 1 317 270 31 74 chr3 90424195 90424358 -127612800 - MLT1I LTR MaLR -2 407 252 7456 35 0 1 chr3 90425478 90426939 -127610219 - L1PA3 LINE L1 -3 6152 4690 457 311 114 26 chr3 90427792 90428020 -127609138 + MIR SINE MIR 2 249 -13 259 98 0 0 chr3 90428384 90428425 -127608733 + MER103 DNA DNA 124 164 -2 2610 96 6 0 chr3 90430002 90430355 -127606803 - THE1A LTR MaLR 0 355 1 11067 97 15 3 chr3 90430355 90431917 -127605241 - THE1A-int LTR MaLR 0 1580 1 2597 85 8 3 chr3 90431918 90432270 -127604888 - THE1A LTR MaLR -1 354 1 1563 250 64 34 chr3 90433684 90434156 -127603002 + MLT1F1 LTR MaLR 78 563 -4 2363 128 72 15 chr3 90434300 90434705 -127602453 - MSTA LTR MaLR 0 428 1 263 260 31 0 chr3 90434803 90434899 -127602259 + L1M4 LINE L1 4996 5094 -1052 22 35 0 0 chr3 90435047 90435076 -127602082 + AT_rich Low_complexity Low_complexity 1 29 0 471 0 32 0 chr3 90435856 90435918 -127601240 + L1PA2 LINE L1 6092 6155 0 376 337 76 40 chr3 90438113 90438416 -127598742 + L2 LINE L2 2996 3309 -4 303 28 0 0 chr3 90439297 90439333 -127597825 + (TG)n Simple_repeat Simple_repeat 2 37 0 312 266 82 39 chr3 90440777 90440923 -127596235 + MLT1I LTR MaLR 67 220 -189 22 0 0 0 chr3 90441226 90441248 -127595910 + AT_rich Low_complexity Low_complexity 1 22 0 542 307 29 37 chr3 90441348 90441589 -127595569 - MIR SINE MIR -21 241 3 267 190 0 0 chr3 90442497 90442555 -127594603 + (ATG)n Simple_repeat Simple_repeat 2 59 0 277 375 37 28 chr3 90442648 90442864 -127594294 + L2 LINE L2 2649 2866 -448 797 275 80 82 chr3 90443557 90444092 -127593066 - MLT1F LTR MaLR -6 536 3 2576 94 39 0 chr3 90444976 90445337 -127591821 - THE1C LTR MaLR 0 375 1 405 102 0 0 chr3 90445361 90445420 -127591738 + (TG)n Simple_repeat Simple_repeat 2 60 0 247 204 0 37 chr3 90447636 90447690 -127589468 + L2 LINE L2 3192 3243 -70 659 258 32 26 chr3 90447738 90447928 -127589230 - L2 LINE L2 -2 3311 3121 643 264 107 41 chr3 90448399 90448806 -127588352 - L2 LINE L2 -193 3120 2687 2103 131 0 10 chr3 90449169 90449481 -127587677 + AluSx SINE Alu 1 309 -3 223 347 157 14 chr3 90450261 90450408 -127586750 + MIR SINE MIR 20 187 -75 21 0 0 0 chr3 90450908 90450929 -127586229 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr3 90451318 90451343 -127585815 + (TTA)n Simple_repeat Simple_repeat 3 27 0 3598 19 0 2 chr3 90451343 90451758 -127585400 - L1PA3 LINE L1 -18 6137 5724 637 39 0 0 chr3 90451758 90451835 -127585323 + L1P LINE L1 4918 4994 -1152 1409 184 72 7 chr3 90451968 90452261 -127584897 - AluJo SINE Alu 0 312 1 264 235 86 25 chr3 90453017 90453098 -127584060 - MIR3 SINE MIR -39 169 84 263 211 14 42 chr3 90453325 90453396 -127583762 + GA-rich Low_complexity Low_complexity 3 71 0 1380 236 83 6 chr3 90453767 90454106 -127583052 - MLT1A1 LTR MaLR 0 365 1 464 283 110 17 chr3 90454886 90455059 -127582099 - MER5A DNA MER1_type 0 189 1 800 97 8 22 chr3 90456609 90456743 -127580415 - L1PA16 LINE L1 0 6166 6035 3688 109 4 0 chr3 90456919 90457442 -127579716 - L1PA13 LINE L1 -63 6100 5576 312 151 0 0 chr3 90457442 90457494 -127579664 + L1PA13 LINE L1 6100 6152 -11 184 307 202 9 chr3 90457675 90457789 -127579369 - L2 LINE L2 -12 3260 3125 3413 145 17 0 chr3 90458315 90458833 -127578325 - MER1A DNA MER1_type -2 527 1 1468 184 10 35 chr3 90460261 90460571 -127576587 - AluJo SINE Alu -9 303 2 1454 270 58 40 chr3 90460903 90461400 -127575758 - MLT1E LTR MaLR -87 506 1 1003 239 65 28 chr3 90461413 90461735 -127575423 - MLT1E3 LTR MaLR 0 624 291 686 216 211 103 chr3 90461732 90462022 -127575136 - MLT1E1 LTR MaLR -254 400 13 * 1037 80 0 7 chr3 90462269 90462407 -127574751 + AluSg/x SINE Alu 176 312 0 333 352 71 31 chr3 90462623 90462819 -127574339 + MIR3 SINE MIR 5 208 0 28 0 0 0 chr3 90462885 90462913 -127574245 + AT_rich Low_complexity Low_complexity 1 28 0 35 54 0 0 chr3 90463070 90463126 -127574032 + AT_rich Low_complexity Low_complexity 1 56 0 29 0 0 0 chr3 90463940 90463969 -127573189 + AT_rich Low_complexity Low_complexity 1 29 0 1983 105 30 30 chr3 90464246 90464541 -127572617 - AluSg SINE Alu -15 295 1 2004 105 0 71 chr3 90465105 90465429 -127571729 + AluSx SINE Alu 1 301 -11 23 0 0 0 chr3 90465877 90465900 -127571258 + AT_rich Low_complexity Low_complexity 1 23 0 369 177 0 0 chr3 90466433 90466512 -127570646 + (TG)n Simple_repeat Simple_repeat 2 80 0 204 206 10 98 chr3 90466679 90466781 -127570377 + MIR SINE MIR 170 262 0 185 333 75 40 chr3 90466792 90466966 -127570192 - MIR SINE MIR -71 191 12 23 86 0 0 chr3 90467483 90467541 -127569617 + AT_rich Low_complexity Low_complexity 1 58 0 754 306 138 11 chr3 90467597 90468364 -127568794 + L1ME2 LINE L1 2078 2890 -3325 278 254 35 29 chr3 90468395 90468568 -127568590 + L1ME2 LINE L1 4453 4626 -1589 * 1222 141 0 5 chr3 90468562 90468753 -127568405 + L1PA16 LINE L1 5789 5978 -188 873 292 52 6 chr3 90468732 90469081 -127568077 + L1ME2 LINE L1 5822 6186 -47 * 37 39 0 0 chr3 90469298 90469349 -127567809 + AT_rich Low_complexity Low_complexity 1 51 0 3962 38 0 0 chr3 90470201 90470676 -127566482 - L1PA3 LINE L1 -3 6152 5678 426 263 118 86 chr3 90472099 90472471 -127564687 + MLT1J LTR MaLR 128 511 0 1607 169 10 27 chr3 90473509 90473804 -127563354 + AluJb SINE Alu 1 290 -22 234 342 25 0 chr3 90473916 90473995 -127563163 + MIR SINE MIR 71 151 -111 255 103 0 0 chr3 90474625 90474664 -127562494 + (CA)n Simple_repeat Simple_repeat 2 40 0 33 43 0 0 chr3 90475224 90475271 -127561887 + AT_rich Low_complexity Low_complexity 1 47 0 798 297 118 36 chr3 90475360 90475934 -127561224 + L2 LINE L2 2678 3308 -5 377 287 110 0 chr3 90477289 90477425 -127559733 + L2 LINE L2 2684 2834 -480 601 335 93 29 chr3 90477569 90477882 -127559276 + L2 LINE L2 2980 3312 -1 31 0 0 0 chr3 90479325 90479356 -127557802 + AT_rich Low_complexity Low_complexity 1 31 0 1535 283 39 9 chr3 90479708 90480149 -127557009 - MLT1H1 LTR MaLR 0 555 102 243 289 0 0 chr3 90480160 90480212 -127556946 + MLT1G1 LTR MaLR 79 130 -465 494 351 108 44 chr3 90480421 90481324 -127555834 + L2 LINE L2 1705 2665 -649 406 268 105 26 chr3 90481397 90481587 -127555571 - MER112 DNA MER1_type -2 258 54 875 311 74 16 chr3 90481616 90482127 -127555031 + Charlie7 DNA MER1_type 14 554 -2058 303 266 25 89 chr3 90484969 90485127 -127552031 + L2 LINE L2 3165 3312 -1 717 274 61 83 chr3 90485130 90485648 -127551510 - MLT1H LTR MaLR 0 549 1 336 215 74 27 chr3 90485860 90486009 -127551149 - Charlie1 DNA MER1_type -164 2597 2442 246 269 0 0 chr3 90486849 90486901 -127550257 - L2 LINE L2 0 3272 3221 2856 186 6 9 chr3 90487989 90488516 -127548642 - LTR45 LTR ERV1 0 525 1 217 385 42 28 chr3 90490091 90490304 -127546854 - L2 LINE L2 -190 3082 2867 37 39 0 0 chr3 90490759 90490810 -127546348 + AT_rich Low_complexity Low_complexity 1 51 0 1456 189 0 19 chr3 90491845 90492214 -127544944 + Tigger2a DNA MER2_type 1 434 0 2142 116 3 3 chr3 90492773 90493076 -127544082 - AluSg SINE Alu -7 303 1 612 302 56 17 chr3 90493105 90493337 -127543821 - MIR SINE MIR -15 247 7 255 93 0 0 chr3 90493384 90493427 -127543731 + (TTTTG)n Simple_repeat Simple_repeat 1 43 0 1399 193 53 8 chr3 90493430 90493695 -127543463 - AluJb SINE Alu -35 277 1 2502 40 3 0 chr3 90493734 90494033 -127543125 + AluY SINE Alu 1 300 -11 2524 121 5 0 chr3 90495960 90496333 -127540825 - THE1C LTR MaLR 0 375 1 1681 179 10 36 chr3 90496411 90496719 -127540439 - AluJb SINE Alu -12 300 1 26 30 0 0 chr3 90496753 90496786 -127540372 + AT_rich Low_complexity Low_complexity 1 33 0 218 232 0 36 chr3 90497706 90497762 -127539396 + CT-rich Low_complexity Low_complexity 1 54 0 23 0 0 0 chr3 90498717 90498740 -127538418 + AT_rich Low_complexity Low_complexity 1 23 0 1006 99 0 0 chr3 90498740 90498881 -127538277 - L1MA1 LINE L1 0 6302 6162 2735 81 21 98 chr3 90499104 90499585 -127537573 - MLT2A1 LTR ERVL 0 444 1 2248 191 34 5 chr3 90499588 90500032 -127537126 + L1MA8 LINE L1 5614 6070 -221 2464 62 7 3 chr3 90500677 90500985 -127536173 - AluY SINE Alu -2 309 1 1356 233 82 44 chr3 90501553 90502003 -127535155 + MLT1C LTR MaLR 1 467 0 464 261 9 0 chr3 90502377 90502492 -127534666 - MLT1A1 LTR MaLR -51 314 199 573 301 49 40 chr3 90503764 90503990 -127533168 - MIR SINE MIR -30 232 5 188 356 87 27 chr3 90504434 90504583 -127532575 + MIR SINE MIR 48 205 -57 302 385 26 21 chr3 90505705 90505897 -127531261 + L3 LINE CR1 1297 1489 -88 500 289 106 33 chr3 90505917 90505952 -127531206 - L2 LINE L2 -4 3309 3278 15249 144 25 38 chr3 90505952 90506599 -127530559 + Tigger4(Zombi) DNA MER2_type 1 655 -2076 2070 141 3 0 chr3 90506599 90506903 -127530255 + AluSx SINE Alu 1 305 -7 15249 144 25 38 chr3 90506903 90508466 -127528692 + Tigger4(Zombi) DNA MER2_type 655 2171 -560 249 33 0 0 chr3 90508466 90508496 -127528662 + (TA)n Simple_repeat Simple_repeat 1 30 0 15249 144 25 38 chr3 90508496 90509050 -127528108 + Tigger4(Zombi) DNA MER2_type 2171 2731 0 500 289 106 33 chr3 90509050 90509287 -127527871 - L2 LINE L2 -35 3278 3017 262 304 88 16 chr3 90509281 90509406 -127527752 - L2 LINE L2 -481 2833 2700 * 276 30 0 0 chr3 90509485 90509518 -127527640 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 977 135 6 26 chr3 90509521 90509677 -127527481 - AluSg/x SINE Alu -23 289 137 327 156 0 0 chr3 90509679 90509740 -127527418 - Alu SINE Alu -252 48 2 1208 258 78 21 chr3 90509848 90510422 -127526736 - L1MC5 LINE L1 -44 7917 7311 25 0 0 0 chr3 90510667 90510692 -127526466 + AT_rich Low_complexity Low_complexity 1 25 0 231 398 10 0 chr3 90511799 90511897 -127525261 - L2 LINE L2 -15 3257 3159 273 315 34 0 chr3 90512806 90512895 -127524263 - MIR3 SINE MIR 0 208 117 618 284 35 15 chr3 90513502 90513699 -127523459 - MIR SINE MIR -13 249 49 389 303 111 12 chr3 90513757 90513919 -127523239 - MIR SINE MIR -48 214 37 21 0 0 0 chr3 90514131 90514152 -127523006 + AT_rich Low_complexity Low_complexity 1 21 0 549 118 11 0 chr3 90514468 90514561 -127522597 - L1MA1 LINE L1 0 6302 6209 439 258 32 105 chr3 90514565 90514755 -127522403 - MLT1J LTR MaLR -244 267 92 260 327 75 19 chr3 90515197 90515304 -127521854 - L2 LINE L2 -215 3057 2945 547 203 122 0 chr3 90515394 90515517 -127521641 + MER58B DNA MER1_type 167 304 -37 2330 83 0 0 chr3 90516326 90516616 -127520542 + AluSx SINE Alu 1 290 -22 316 282 39 10 chr3 90516683 90516786 -127520372 - MIR3 SINE MIR -3 205 100 225 0 0 0 chr3 90516931 90516956 -127520202 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 2065 134 10 3 chr3 90517199 90517505 -127519653 - AluSx SINE Alu -4 308 1 29 47 0 0 chr3 90519092 90519135 -127518023 + AT_rich Low_complexity Low_complexity 1 43 0 218 108 62 0 chr3 90519139 90519204 -127517954 + (TA)n Simple_repeat Simple_repeat 1 69 0 246 267 147 0 chr3 90519592 90519667 -127517491 - MIR SINE MIR -55 153 68 321 26 0 0 chr3 90520124 90520162 -127516996 + (TG)n Simple_repeat Simple_repeat 1 38 0 360 0 0 0 chr3 90520980 90521020 -127516138 + (A)n Simple_repeat Simple_repeat 1 40 0 193 277 265 0 chr3 90521718 90521801 -127515357 - MER5A DNA MER1_type -1 188 84 217 333 83 25 chr3 90522454 90522574 -127514584 + L2 LINE L2 2767 2893 -421 1123 39 0 0 chr3 90522607 90522735 -127514423 - AluYa5/8 SINE Alu -16 294 167 919 256 8 8 chr3 90522735 90522993 -127514165 - L1MDa LINE L1 -3273 3267 3010 * 2877 212 47 10 chr3 90522988 90523676 -127513482 - L1MDa LINE L1 -5402 1138 13 1564 173 28 35 chr3 90525049 90525338 -127511820 - AluJo SINE Alu -17 295 9 939 253 65 4 chr3 90525379 90525640 -127511518 + LTR16C LTR ERVL 181 457 -34 2529 131 72 15 chr3 90525831 90526236 -127510922 + MSTA LTR MaLR 1 428 0 207 259 19 28 chr3 90528261 90528369 -127508789 - L3 LINE CR1 -316 1261 1155 283 176 25 22 chr3 90528399 90528489 -127508669 + MLT1H LTR MaLR 476 547 -2 276 239 97 9 chr3 90528580 90528693 -127508465 - Charlie7 DNA MER1_type -6 2606 2484 232 252 112 37 chr3 90528675 90528782 -127508376 - Charlie7 DNA MER1_type -2455 157 43 * 212 250 0 0 chr3 90529094 90529134 -127508024 + L2 LINE L2 3262 3301 -12 2342 99 3 0 chr3 90529208 90529512 -127507646 - AluSg SINE Alu -4 306 2 2383 94 0 13 chr3 90529513 90529821 -127507337 - AluSg SINE Alu -6 304 1 480 284 75 33 chr3 90529877 90530049 -127507109 - MLT1K LTR MaLR -228 360 197 1395 132 5 0 chr3 90530049 90530261 -127506897 + L1PA15 LINE L1 5951 6163 -2 480 284 75 33 chr3 90530261 90530346 -127506812 - MLT1K LTR MaLR -391 197 22 1984 113 0 11 chr3 90530455 90530737 -127506421 + L1PA15 LINE L1 5884 6162 -3 655 208 0 75 chr3 90530962 90531121 -127506037 - MER20 DNA MER1_type -43 176 30 800 163 23 47 chr3 90531154 90531326 -127505832 + MER53 DNA DNA 22 189 0 253 162 0 0 chr3 90531328 90531365 -127505793 - MER20 DNA MER1_type -182 37 1 592 227 18 0 chr3 90531369 90531479 -127505679 - MER81 DNA DNA -1 113 2 856 180 124 41 chr3 90532393 90532587 -127504571 - MER63A DNA MER1_type 0 210 1 812 248 46 14 chr3 90533612 90533830 -127503328 - MIR SINE MIR -1 261 37 308 285 57 0 chr3 90534414 90534537 -127502621 - LTR16C LTR ERVL -1 490 361 281 222 48 0 chr3 90535077 90535140 -127502018 - L2 LINE L2 0 3272 3207 255 202 60 36 chr3 90535142 90535226 -127501932 + L1MC/D LINE L1 5719 5804 -2004 198 103 0 0 chr3 90535311 90535340 -127501818 + (A)n Simple_repeat Simple_repeat 1 29 0 410 251 30 64 chr3 90535452 90535655 -127501503 + L2 LINE L2 3118 3313 0 811 169 139 6 chr3 90537082 90537248 -127499910 + MLT1A2 LTR MaLR 187 374 0 551 180 113 67 chr3 90537248 90537410 -127499748 + MLT1F LTR MaLR 340 514 -28 2036 166 42 14 chr3 90537410 90537765 -127499393 - MLT1A1 LTR MaLR 0 365 1 551 180 113 67 chr3 90537765 90537796 -127499362 + MLT1F LTR MaLR 514 542 0 2265 80 7 10 chr3 90538313 90538613 -127498545 - AluY SINE Alu -12 299 1 1949 232 69 20 chr3 90538667 90539176 -127497982 - MLT1H LTR MaLR -2 547 14 296 297 135 42 chr3 90539766 90539958 -127497200 + L2 LINE L2 3104 3313 0 1568 145 61 81 chr3 90540249 90540559 -127496599 + AluJb SINE Alu 1 304 -8 378 299 127 26 chr3 90540753 90541061 -127496097 + L1MB3 LINE L1 5485 5823 -298 1253 148 0 87 chr3 90542264 90542493 -127494665 - AluJb SINE Alu -103 209 1 235 100 0 50 chr3 90543627 90543660 -127493498 - L1MB3 LINE L1 -232 5951 5919 1143 118 6 6 chr3 90543660 90543838 -127493320 + L1MB3 LINE L1 6006 6183 0 2146 123 16 87 chr3 90544077 90544515 -127492643 - L1MA2 LINE L1 0 6304 5898 809 256 105 22 chr3 90544637 90544914 -127492244 - L2 LINE L2 -2325 989 690 1491 280 71 26 chr3 90545081 90545574 -127491584 - L2 LINE L2 -2611 703 189 479 329 53 9 chr3 90547724 90547949 -127489209 - MIR SINE MIR -9 253 19 183 186 0 70 chr3 90549158 90549188 -127487970 - L2 LINE L2 -337 2976 2948 647 62 0 12 chr3 90549188 90549269 -127487889 - MADE1 DNA Mariner 0 80 1 183 186 0 70 chr3 90549269 90549281 -127487877 - L2 LINE L2 -365 2948 2937 214 267 317 8 chr3 90549480 90549600 -127487558 - L2 LINE L2 0 3272 3116 282 227 3 0 chr3 90549931 90549996 -127487162 - MLT1K LTR MaLR -5 610 526 459 209 29 9 chr3 90550257 90550362 -127486796 - MLT1L LTR MaLR -367 248 142 2460 228 34 51 chr3 90551290 90552000 -127485158 - L1ME3A LINE L1 -1 6169 5472 275 287 2 10 chr3 90552653 90552751 -127484407 + MLT1I LTR MaLR 318 401 -8 721 167 104 0 chr3 90554460 90554604 -127482554 + MER3 DNA MER1_type 51 209 0 411 252 24 24 chr3 90555251 90555378 -127481780 + MIR SINE MIR 21 147 -115 306 352 11 0 chr3 90555587 90555678 -127481480 - MIR SINE MIR -59 149 58 200 176 0 0 chr3 90555861 90555895 -127481263 + (CA)n Simple_repeat Simple_repeat 2 35 0 204 222 0 0 chr3 90555991 90556027 -127481131 + (TG)n Simple_repeat Simple_repeat 2 37 0 375 254 195 53 chr3 90558622 90558945 -127478213 - L2 LINE L2 0 3313 2945 193 313 0 30 chr3 90561047 90561114 -127476044 - L3 LINE CR1 -10 1567 1503 339 235 31 20 chr3 90561651 90561749 -127475409 - MLT2F LTR ERVL 0 663 565 301 409 0 18 chr3 90561804 90561968 -127475190 + C-rich Low_complexity Low_complexity 4 164 0 1345 226 78 9 chr3 90562661 90562980 -127474178 + MER58B DNA MER1_type 1 341 0 243 0 0 0 chr3 90563945 90563972 -127473186 + (A)n Simple_repeat Simple_repeat 1 27 0 241 333 35 44 chr3 90564183 90564297 -127472861 + L2 LINE L2 3182 3294 -19 419 307 64 23 chr3 90565188 90565384 -127471774 - MIR3 SINE MIR -4 204 2 205 339 85 23 chr3 90566415 90566545 -127470613 - MIR3 SINE MIR -14 194 57 615 326 104 26 chr3 90566685 90567176 -127469982 - L2 LINE L2 -25 3288 2760 238 265 12 48 chr3 90567202 90567285 -127469873 - L2 LINE L2 -1 3312 3233 2677 252 78 16 chr3 90567317 90568206 -127468952 - L2 LINE L2 -570 2744 1801 288 316 168 15 chr3 90568223 90568419 -127468739 - L2 LINE L2 -182 3131 2906 186 167 0 0 chr3 90568556 90568592 -127468566 + (TAA)n Simple_repeat Simple_repeat 3 38 0 29 0 0 0 chr3 90568719 90568748 -127468410 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 90570550 90570572 -127466586 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr3 90570581 90570622 -127466536 + AT_rich Low_complexity Low_complexity 1 41 0 241 258 0 0 chr3 90570677 90570743 -127466415 + T-rich Low_complexity Low_complexity 1 66 0 476 323 52 13 chr3 90570909 90571138 -127466020 - MIR SINE MIR -6 256 19 1522 164 64 104 chr3 90572680 90573149 -127464009 - LTR7 LTR ERV1 0 450 1 258 296 49 21 chr3 90573149 90573291 -127463867 - HERVH LTR ERV1 0 7713 7568 848 251 9 5 chr3 90573797 90574008 -127463150 - HERVH LTR ERV1 -2984 4729 4518 * 3987 202 1 15 chr3 90573997 90574820 -127462338 - HERVH LTR ERV1 -4641 3072 2261 7579 208 23 36 chr3 90575005 90577787 -127459371 - HERVH LTR ERV1 -3524 3040 17 1307 200 49 90 chr3 90577804 90578273 -127458885 - LTR7 LTR ERV1 0 450 1 351 0 0 0 chr3 90578278 90578317 -127458841 + (CA)n Simple_repeat Simple_repeat 1 39 0 1342 166 11 26 chr3 90578711 90578982 -127458176 - L1PA16 LINE L1 0 6166 5900 3463 81 0 0 chr3 90579037 90579507 -127457651 + L1PA8 LINE L1 5703 6172 0 1970 161 0 0 chr3 90580922 90581221 -127455937 - AluSx SINE Alu -3 309 11 429 356 112 24 chr3 90582785 90583277 -127453881 + L2 LINE L2 1726 2260 -1054 914 142 113 42 chr3 90583339 90583551 -127453607 + MLT1B LTR MaLR 1 227 -163 451 297 80 17 chr3 90583644 90583819 -127453339 + MIR SINE MIR 5 190 -72 559 319 118 0 chr3 90584776 90584980 -127452178 + MIR SINE MIR 20 247 -15 564 265 154 50 chr3 90586488 90586748 -127450410 + MLT1E2 LTR MaLR 1 287 -339 545 157 0 0 chr3 90586746 90586835 -127450323 + MLT1E2 LTR MaLR 415 503 -2 * 266 234 16 16 chr3 90588346 90588410 -127448748 - L2 LINE L2 0 3313 3250 376 414 6 0 chr3 90589761 90589942 -127447216 - L3 LINE CR1 -84 1493 1312 7977 180 97 38 chr3 90590549 90592206 -127444952 + MER52A LTR ERV1 1 1755 0 1520 134 22 0 chr3 90592218 90592442 -127444716 - MER2 DNA MER2_type -114 231 3 276 358 18 9 chr3 90592989 90593098 -127444060 - L2 LINE L2 -493 2821 2712 436 322 143 15 chr3 90593195 90593586 -127443572 - L2 LINE L2 -1008 2306 1866 251 309 25 43 chr3 90594169 90594331 -127442827 + L1MC4 LINE L1 5696 5854 -1954 23 33 0 0 chr3 90594851 90594881 -127442277 + AT_rich Low_complexity Low_complexity 1 30 0 877 123 0 13 chr3 90595446 90595600 -127441558 + (GAA)n Simple_repeat Simple_repeat 2 153 0 1753 151 0 59 chr3 90595924 90596248 -127440910 + AluSx SINE Alu 1 305 -7 203 61 30 0 chr3 90596251 90596284 -127440874 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 331 287 84 14 chr3 90596992 90597135 -127440023 - HAL1 LINE L1 -109 2398 2246 313 183 70 43 chr3 90597286 90597401 -127439757 - HAL1b LINE L1 -461 887 770 22 0 0 0 chr3 90597701 90597723 -127439435 + AT_rich Low_complexity Low_complexity 1 22 0 313 352 111 12 chr3 90597843 90598005 -127439153 - HAL1 LINE L1 -620 1887 1710 22 35 0 0 chr3 90598703 90598732 -127438426 + AT_rich Low_complexity Low_complexity 1 29 0 183 382 34 0 chr3 90599402 90599491 -127437667 + L3 LINE CR1 1341 1432 -145 23 0 0 0 chr3 90599940 90599963 -127437195 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr3 90601637 90601665 -127435493 + AT_rich Low_complexity Low_complexity 1 28 0 357 238 0 0 chr3 90602286 90602387 -127434771 + (TA)n Simple_repeat Simple_repeat 1 101 0 319 300 0 0 chr3 90602396 90602486 -127434672 + L1MC4 LINE L1 6614 6703 -1339 203 182 0 0 chr3 90602486 90602519 -127434639 + (TATATG)n Simple_repeat Simple_repeat 5 37 0 249 145 0 65 chr3 90602519 90602581 -127434577 + LTR66 LTR ERVL 381 438 -172 234 0 0 0 chr3 90602619 90602645 -127434513 + (CA)n Simple_repeat Simple_repeat 1 26 0 3612 246 41 70 chr3 90603043 90603403 -127433755 + L1MC4a LINE L1 6281 6650 -1158 1993 110 10 17 chr3 90603403 90603730 -127433428 + AluSq SINE Alu 1 325 0 342 80 0 0 chr3 90603734 90603784 -127433374 + (TG)n Simple_repeat Simple_repeat 1 50 0 3612 246 41 70 chr3 90603784 90604897 -127432261 + L1MC4a LINE L1 6653 7718 -90 1376 152 109 31 chr3 90604912 90605168 -127431990 - AluJo SINE Alu -30 282 7 353 165 25 13 chr3 90605192 90605271 -127431887 + L1MD3 LINE L1 7901 7980 -15 516 261 118 6 chr3 90605287 90605448 -127431710 - MIR SINE MIR -74 188 10 2369 87 3 0 chr3 90605496 90605806 -127431352 - AluSx SINE Alu -1 311 1 24 32 0 0 chr3 90606054 90606085 -127431073 + AT_rich Low_complexity Low_complexity 1 31 0 497 343 34 13 chr3 90607976 90608209 -127428949 - MIR SINE MIR 0 262 25 560 328 41 16 chr3 90609552 90609796 -127427362 + MIR SINE MIR 4 253 -9 1292 208 161 100 chr3 90609938 90610651 -127426507 - LTR50 LTR ERVL -34 761 5 24 53 0 0 chr3 90611197 90611235 -127425923 + AT_rich Low_complexity Low_complexity 1 38 0 634 279 147 20 chr3 90611533 90611927 -127425231 + L1MC4 LINE L1 7599 8042 0 28 86 0 0 chr3 90611996 90612066 -127425092 + AT_rich Low_complexity Low_complexity 1 70 0 221 294 0 0 chr3 90613289 90613374 -127423784 + A-rich Low_complexity Low_complexity 1 85 0 200 167 0 0 chr3 90613491 90613521 -127423637 + polypyrimidine Low_complexity Low_complexity 5 34 0 183 162 0 0 chr3 90613627 90613664 -127423494 + T-rich Low_complexity Low_complexity 1 37 0 537 260 74 62 chr3 90614165 90614423 -127422735 - MLT1K LTR MaLR -2 586 326 230 362 121 26 chr3 90614528 90614644 -127422514 + L2 LINE L2 3142 3268 -4 555 319 65 9 chr3 90615424 90615656 -127421502 - MIR SINE MIR -15 247 3 191 36 36 0 chr3 90616220 90616248 -127420910 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 32 26 0 0 chr3 90616532 90616571 -127420587 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr3 90616777 90616799 -127420359 + AT_rich Low_complexity Low_complexity 1 22 0 239 381 0 0 chr3 90617711 90617816 -127419342 - L2 LINE L2 -5 3267 3163 252 253 50 0 chr3 90617986 90618085 -127419073 + L1MC4 LINE L1 6602 6705 -1337 246 217 181 24 chr3 90618250 90618333 -127418825 - L1ME LINE L1 -451 5719 5624 294 295 12 0 chr3 90618349 90618455 -127418703 + L1ME LINE L1 5735 5842 -320 204 255 0 0 chr3 90618788 90618835 -127418323 + A-rich Low_complexity Low_complexity 1 47 0 * 234 167 0 0 chr3 90618800 90618836 -127418322 + polypurine Low_complexity Low_complexity 2 37 0 477 138 0 0 chr3 90618864 90618944 -127418214 + (GGAA)n Simple_repeat Simple_repeat 3 82 0 243 0 0 0 chr3 90619771 90619798 -127417360 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 2447 57 0 22 chr3 90620298 90620616 -127416542 + AluY SINE Alu 1 311 0 802 153 0 15 chr3 90620618 90620749 -127416409 + AluJb SINE Alu 1 129 -183 234 128 0 0 chr3 90620749 90620788 -127416370 + (TA)n Simple_repeat Simple_repeat 1 39 0 335 267 0 22 chr3 90620794 90620884 -127416274 - L1MC4 LINE L1 -1339 6703 6616 315 245 0 51 chr3 90620897 90620995 -127416163 + L1MC4 LINE L1 6611 6703 -1339 236 224 15 0 chr3 90620995 90621062 -127416096 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 897 192 6 0 chr3 90621064 90621271 -127415887 + AluJb SINE Alu 125 332 0 26 74 0 0 chr3 90621276 90621330 -127415828 + AT_rich Low_complexity Low_complexity 1 54 0 320 241 40 87 chr3 90621344 90621492 -127415666 - L1ME4a LINE L1 -93 6028 5899 3494 69 2 0 chr3 90621492 90621944 -127415214 - L1PA7 LINE L1 -1 6153 5701 320 241 40 87 chr3 90621944 90622094 -127415064 - L1ME4a LINE L1 -222 5899 5744 327 297 34 47 chr3 90622195 90622343 -127414815 - L2 LINE L2 -937 2377 2232 221 0 35 0 chr3 90622375 90622404 -127414754 + (TTATA)n Simple_repeat Simple_repeat 2 31 0 242 146 73 0 chr3 90622474 90622570 -127414588 + (TA)n Simple_repeat Simple_repeat 2 104 0 763 238 58 58 chr3 90623167 90623478 -127413680 + MER5C DNA MER1_type 14 324 0 1889 52 3 83 chr3 90624643 90624967 -127412191 - AluY SINE Alu -13 298 1 588 248 52 90 chr3 90625551 90625894 -127411264 - MER46C DNA MER2_type -5 333 4 1832 149 3 32 chr3 90626204 90626512 -127410646 + AluJo SINE Alu 1 299 -13 327 173 0 0 chr3 90628269 90628321 -127408837 + AluJo SINE Alu 49 100 -202 599 279 84 28 chr3 90628461 90628676 -127408482 - MIR SINE MIR -22 240 14 204 159 0 23 chr3 90628720 90628764 -127408394 + T-rich Low_complexity Low_complexity 3 45 0 412 299 72 24 chr3 90629508 90629675 -127407483 + MIR SINE MIR 20 194 -68 657 272 34 83 chr3 90629692 90630078 -127407080 + LTR37B LTR ERV1 53 419 -49 345 394 47 28 chr3 90630192 90630446 -127406712 + L2 LINE L2 2943 3201 -71 307 299 166 19 chr3 90631089 90631246 -127405912 - MER5A DNA MER1_type -6 183 4 477 169 0 0 chr3 90631466 90631543 -127405615 - FLAM_A SINE Alu -19 123 47 21 0 0 0 chr3 90632335 90632356 -127404802 + AT_rich Low_complexity Low_complexity 1 21 0 228 67 0 0 chr3 90633054 90633084 -127404074 + (T)n Simple_repeat Simple_repeat 1 30 0 490 123 0 0 chr3 90633088 90633169 -127403989 + AluSp/q SINE Alu 232 312 -1 182 114 0 29 chr3 90633323 90633358 -127403800 + (GGAAA)n Simple_repeat Simple_repeat 5 38 0 491 267 131 21 chr3 90634402 90634593 -127402565 + MIR SINE MIR 19 230 -32 562 329 174 29 chr3 90634679 90635583 -127401575 + L2 LINE L2 1720 2754 -560 228 111 0 0 chr3 90636147 90636183 -127400975 + (A)n Simple_repeat Simple_repeat 1 36 0 21 57 0 0 chr3 90636585 90636620 -127400538 + AT_rich Low_complexity Low_complexity 1 35 0 285 145 0 0 chr3 90636678 90636740 -127400418 + (T)n Simple_repeat Simple_repeat 1 62 0 1199 172 5 5 chr3 90637800 90638003 -127399155 + AluJo SINE Alu 86 288 -24 292 287 253 0 chr3 90638286 90638460 -127398698 - L2 LINE L2 -688 2626 2409 192 182 0 0 chr3 90639369 90639413 -127397745 + A-rich Low_complexity Low_complexity 1 44 0 332 317 41 24 chr3 90639529 90639652 -127397506 + L2 LINE L2 3148 3272 0 1420 192 23 87 chr3 90640688 90641079 -127396079 + MLT1B LTR MaLR 21 386 -4 189 276 86 0 chr3 90641434 90641492 -127395666 - MIR SINE MIR -3 259 197 887 209 28 0 chr3 90641774 90641956 -127395202 - MER5A DNA MER1_type -2 187 1 338 222 0 0 chr3 90642821 90642893 -127394265 - MER33 DNA MER1_type 0 324 253 462 252 29 6 chr3 90642907 90643064 -127394094 - MER33 DNA MER1_type -264 60 1 261 229 9 76 chr3 90643549 90643654 -127393504 + L2 LINE L2 3150 3247 -66 2354 117 13 16 chr3 90643686 90644062 -127393096 - THE1C LTR MaLR 0 375 1 28 0 0 0 chr3 90644823 90644851 -127392307 + AT_rich Low_complexity Low_complexity 1 28 0 1093 169 24 0 chr3 90645417 90645630 -127391528 + L1MA9 LINE L1 6095 6312 0 1459 49 5 19 chr3 90645658 90645863 -127391295 - AluY SINE Alu -11 300 99 24 0 0 0 chr3 90646255 90646279 -127390879 + AT_rich Low_complexity Low_complexity 1 24 0 503 229 131 20 chr3 90647100 90647344 -127389814 - Charlie4a DNA MER1_type -34 474 204 1886 192 45 38 chr3 90647360 90647781 -127389377 - Tigger2a DNA MER2_type -10 424 1 390 187 246 96 chr3 90647781 90647962 -127389196 - Charlie4a DNA MER1_type -299 209 1 839 264 61 22 chr3 90648962 90649239 -127387919 - MLT1E2 LTR MaLR -1 625 338 251 283 43 54 chr3 90649266 90649358 -127387800 - L2 LINE L2 -4 3268 3178 253 273 26 0 chr3 90649441 90649518 -127387640 - L2 LINE L2 -9 3304 3226 22 35 0 0 chr3 90650222 90650251 -127386907 + AT_rich Low_complexity Low_complexity 1 29 0 1292 209 112 9 chr3 90651258 90651588 -127385570 + MLT1A1 LTR MaLR 2 365 0 23 33 0 0 chr3 90651613 90651643 -127385515 + AT_rich Low_complexity Low_complexity 1 30 0 269 316 42 11 chr3 90652831 90652926 -127384232 + MIR SINE MIR 56 153 -109 1276 204 42 31 chr3 90653380 90654031 -127383127 + L1MD2 LINE L1 4905 5561 -744 2031 187 51 79 chr3 90654133 90654700 -127382458 + L1MD2 LINE L1 5801 6351 -8 5620 110 19 0 chr3 90655134 90656374 -127380784 - L1PA13 LINE L1 -11 6152 4878 1935 167 30 33 chr3 90656443 90656808 -127380350 - THE1B LTR MaLR 0 364 1 10907 94 7 39 chr3 90656808 90658440 -127378718 - THE1B-int LTR MaLR 0 1580 2 1839 153 66 24 chr3 90658441 90658774 -127378384 - THE1B LTR MaLR 0 364 18 423 79 143 0 chr3 90658774 90658837 -127378321 - THE1B LTR MaLR -275 89 18 * 574 74 111 0 chr3 90658836 90658917 -127378241 - THE1B LTR MaLR -274 90 1 2440 70 0 3 chr3 90659107 90659409 -127377749 + AluY SINE Alu 1 301 -10 324 0 0 0 chr3 90659409 90659445 -127377713 + (TA)n Simple_repeat Simple_repeat 2 37 0 25 83 0 0 chr3 90660635 90660695 -127376463 + AT_rich Low_complexity Low_complexity 1 60 0 797 346 181 36 chr3 90660894 90662072 -127375086 + L3 LINE CR1 208 1555 -22 23 54 0 0 chr3 90662890 90662927 -127374231 + AT_rich Low_complexity Low_complexity 1 37 0 683 219 7 0 chr3 90663113 90663250 -127373908 - FAM SINE Alu -22 163 26 327 154 0 0 chr3 90663251 90663303 -127373855 - AluJo/F(R)AM SINE Alu -87 215 164 462 205 0 0 chr3 90663303 90663386 -127373772 - FRAM/FAM SINE Alu -94 82 1 263 378 37 55 chr3 90663803 90664240 -127372918 + L2 LINE L2 2430 2858 -456 1277 187 32 3 chr3 90664587 90664871 -127372287 - L1 LINE L1 -949 5197 4906 1242 132 142 50 chr3 90664869 90665150 -127372008 - L1PB2 LINE L1 -1 6150 5844 * 3940 203 69 14 chr3 90665152 90666274 -127370884 - L1 LINE L1 -1227 6338 5056 527 230 85 188 chr3 90666369 90667360 -127369798 - LTR28 LTR ERV1 -210 1545 1 6323 187 12 49 chr3 90667383 90668487 -127368671 - L1 LINE L1 -2549 5016 3971 2170 75 17 0 chr3 90668487 90668776 -127368382 + L1PA8 LINE L1 5868 6165 -7 6323 187 12 49 chr3 90668776 90669371 -127367787 - L1 LINE L1 -3594 3971 3355 212 384 7 20 chr3 90669587 90669733 -127367425 + L2 LINE L2 3161 3304 -9 181 333 0 0 chr3 90671199 90671250 -127365908 - MER5B DNA MER1_type -52 126 76 340 307 62 0 chr3 90671839 90672017 -127365141 - MIR SINE MIR -41 221 34 1275 207 63 75 chr3 90672571 90672789 -127364369 - MER77 LTR ERV1 -63 542 328 900 177 6 40 chr3 90672789 90672964 -127364194 - FAM SINE Alu -2 173 5 1275 207 63 75 chr3 90672964 90673093 -127364065 - MER77 LTR ERV1 -277 328 199 1123 196 5 0 chr3 90673135 90673329 -127363829 - MER77 LTR ERV1 -410 195 1 1042 139 55 11 chr3 90673745 90674055 -127363103 - THE1C LTR MaLR 0 375 1 213 350 20 0 chr3 90674224 90674324 -127362834 + MIR SINE MIR 148 249 -13 192 40 0 0 chr3 90674480 90674505 -127362653 + (TA)n Simple_repeat Simple_repeat 1 25 0 2736 10 0 0 chr3 90675102 90675404 -127361754 + AluY SINE Alu 1 302 -9 36 0 0 0 chr3 90675979 90676015 -127361143 + AT_rich Low_complexity Low_complexity 1 36 0 788 273 24 14 chr3 90677569 90677778 -127359380 + MIR SINE MIR 49 259 -3 26 0 0 0 chr3 90677801 90677827 -127359331 + AT_rich Low_complexity Low_complexity 1 26 0 1509 186 36 4 chr3 90678116 90678226 -127358932 + AluJo SINE Alu 12 117 -195 927 92 0 0 chr3 90678226 90678357 -127358801 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 1509 186 36 4 chr3 90678357 90678520 -127358638 + AluJo SINE Alu 117 294 -18 296 352 65 28 chr3 90678633 90678849 -127358309 + L2 LINE L2 2804 3027 -245 266 281 22 34 chr3 90679868 90679957 -127357201 - MIR SINE MIR -109 153 66 252 266 155 63 chr3 90680367 90680574 -127356584 - LTR67 LTR ERVL -329 228 3 1962 109 11 7 chr3 90680592 90680876 -127356282 + AluSx SINE Alu 1 285 -27 4851 138 27 30 chr3 90681003 90681864 -127355294 - MER4D LTR ERV1 -9 863 6 445 61 0 0 chr3 90681978 90682044 -127355114 - L1MA3 LINE L1 0 6305 6240 322 358 89 43 chr3 90682068 90682983 -127354175 - L2 LINE L2 -5 3267 2307 1137 63 7 0 chr3 90683425 90683567 -127353591 + AluSp/q SINE Alu 161 303 -10 222 344 54 36 chr3 90683975 90684199 -127352959 - L2 LINE L2 -844 2470 2243 202 298 122 38 chr3 90684906 90685037 -127352121 - MIR SINE MIR -50 212 71 342 0 0 0 chr3 90685876 90685914 -127351244 + (TA)n Simple_repeat Simple_repeat 2 39 0 412 319 69 34 chr3 90687070 90687274 -127349884 + MIR SINE MIR 37 247 -15 234 0 0 0 chr3 90687382 90687408 -127349750 + (TC)n Simple_repeat Simple_repeat 1 26 0 339 148 12 25 chr3 90687838 90687919 -127349239 + CT-rich Low_complexity Low_complexity 2 81 0 26 30 0 0 chr3 90688830 90688863 -127348295 + AT_rich Low_complexity Low_complexity 1 33 0 1991 125 0 0 chr3 90688950 90689229 -127347929 + AluSx SINE Alu 15 293 -19 252 282 61 46 chr3 90689949 90690080 -127347078 + MER94 DNA DNA 1 133 -1 206 171 40 26 chr3 90691760 90691836 -127345322 + GA-rich Low_complexity Low_complexity 3 79 0 21 57 0 0 chr3 90691976 90692011 -127345147 + AT_rich Low_complexity Low_complexity 1 35 0 346 212 9 71 chr3 90692649 90692762 -127344396 + L1MC4 LINE L1 6614 6719 -1323 318 26 0 0 chr3 90692772 90692811 -127344347 + (TG)n Simple_repeat Simple_repeat 2 40 0 1889 150 0 29 chr3 90692820 90693127 -127344031 - AluJb SINE Alu -14 298 1 2308 95 0 0 chr3 90693311 90693606 -127343552 - AluSx SINE Alu -12 300 6 1004 141 48 92 chr3 90693609 90693836 -127343322 + MLT1B LTR MaLR 151 367 -23 846 227 92 0 chr3 90694009 90694216 -127342942 + MIR SINE MIR 2 227 -35 282 242 125 62 chr3 90695645 90695773 -127341385 - MIR3 SINE MIR -62 146 11 21 36 0 0 chr3 90696693 90696721 -127340437 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 90697122 90697150 -127340008 + AT_rich Low_complexity Low_complexity 1 28 0 2906 149 102 14 chr3 90697264 90697820 -127339338 - MER6A DNA MER2_type 0 605 1 3006 128 18 0 chr3 90698155 90698600 -127338558 + MLT2A2 LTR ERVL 1 453 0 1331 166 40 83 chr3 90699427 90699729 -127337429 + AluJo SINE Alu 17 305 -7 206 222 95 0 chr3 90700109 90700172 -127336986 + L2 LINE L2 514 582 -2732 2371 76 7 0 chr3 90700984 90701286 -127335872 + AluY SINE Alu 1 304 -7 1647 308 138 27 chr3 90701405 90702605 -127334553 + L2 LINE L2 1942 3275 -38 451 44 88 9 chr3 90705725 90705838 -127331320 + (TA)n Simple_repeat Simple_repeat 2 123 0 222 115 19 39 chr3 90706713 90706765 -127330393 + (TA)n Simple_repeat Simple_repeat 1 51 0 771 244 38 24 chr3 90707552 90707843 -127329315 - Charlie2a DNA MER1_type -1842 1020 726 1131 175 66 62 chr3 90707927 90708184 -127328974 - AluJo SINE Alu -54 258 1 23 0 0 0 chr3 90709570 90709593 -127327565 + AT_rich Low_complexity Low_complexity 1 23 0 203 302 79 0 chr3 90710280 90710343 -127326815 - MIR SINE MIR -179 83 16 212 311 16 0 chr3 90710388 90710449 -127326709 + L2 LINE L2 3155 3216 -56 42 20 0 0 chr3 90710532 90710581 -127326577 + AT_rich Low_complexity Low_complexity 1 49 0 28 86 0 0 chr3 90711456 90711526 -127325632 + AT_rich Low_complexity Low_complexity 1 70 0 23 0 0 0 chr3 90711584 90711607 -127325551 + AT_rich Low_complexity Low_complexity 1 23 0 549 302 72 33 chr3 90711914 90712248 -127324910 - MLT1J LTR MaLR -143 368 22 484 239 22 29 chr3 90713061 90713199 -127323959 - MER5A DNA MER1_type 0 189 53 396 0 0 0 chr3 90714384 90714428 -127322730 + (CA)n Simple_repeat Simple_repeat 1 44 0 206 191 44 59 chr3 90714499 90714567 -127322591 - MER5A DNA MER1_type -76 113 47 1850 159 40 27 chr3 90715912 90716282 -127320876 + THE1C LTR MaLR 1 375 0 203 147 0 0 chr3 90716324 90716358 -127320800 + (TG)n Simple_repeat Simple_repeat 1 34 0 206 244 0 13 chr3 90717025 90717103 -127320055 + GA-rich Low_complexity Low_complexity 3 79 0 314 271 185 7 chr3 90717138 90717289 -127319869 - MER5B DNA MER1_type 0 178 1 24 32 0 0 chr3 90717511 90717542 -127319616 + AT_rich Low_complexity Low_complexity 1 31 0 2331 115 0 3 chr3 90717755 90718068 -127319090 - AluSx SINE Alu 0 312 1 401 290 29 29 chr3 90718499 90718637 -127318521 + MIR SINE MIR 18 155 -107 2236 111 0 0 chr3 90720663 90720970 -127316188 + AluSg1 SINE Alu 1 307 -2 734 188 21 7 chr3 90722807 90722951 -127314207 - AluJb SINE Alu -31 281 136 2330 84 0 3 chr3 90723053 90723350 -127313808 + AluSx SINE Alu 1 296 -16 1589 225 5 16 chr3 90723443 90723812 -127313346 + MLT1A1 LTR MaLR 1 365 0 1425 113 10 5 chr3 90725672 90725875 -127311283 - AluSq SINE Alu -109 204 1 2027 200 50 31 chr3 90725887 90726363 -127310795 - L1MB8 LINE L1 0 6178 5694 22 0 0 0 chr3 90726750 90726772 -127310386 + AT_rich Low_complexity Low_complexity 1 22 0 427 330 75 17 chr3 90727254 90727427 -127309731 + MER5A DNA MER1_type 1 183 -6 276 236 0 0 chr3 90727715 90727770 -127309388 + AluS SINE Alu 229 283 -19 189 359 0 0 chr3 90728064 90728142 -127309016 + L2 LINE L2 2271 2348 -966 1636 225 82 31 chr3 90728142 90728618 -127308540 + MLT1D LTR MaLR 2 501 -4 21 0 0 0 chr3 90728685 90728706 -127308452 + AT_rich Low_complexity Low_complexity 1 21 0 190 292 62 62 chr3 90730682 90730747 -127306411 + MIR SINE MIR 36 100 -108 240 200 150 0 chr3 90730912 90730972 -127306186 - L2 LINE L2 -1 3312 3244 2796 151 17 15 chr3 90730977 90731502 -127305656 + L1MA4A LINE L1 5768 6293 -10 225 226 38 0 chr3 90732368 90732454 -127304704 + (TCTCTG)n Simple_repeat Simple_repeat 1 89 0 2089 131 0 0 chr3 90733094 90733391 -127303767 - AluSx SINE Alu -15 297 1 273 352 0 17 chr3 90733612 90733791 -127303367 + C-rich Low_complexity Low_complexity 1 176 0 214 222 0 0 chr3 90734991 90735036 -127302122 - L2 LINE L2 0 3313 3269 402 272 146 6 chr3 90736582 90736740 -127300418 - MIR SINE MIR -11 251 72 1204 187 27 127 chr3 90736855 90737257 -127299901 - MLT1A1 LTR MaLR 0 365 4 625 250 0 0 chr3 90737365 90737493 -127299665 + MER94 DNA DNA 1 128 -6 2972 160 10 10 chr3 90738051 90738569 -127298589 + L1PA16 LINE L1 5522 6039 -127 1732 170 13 7 chr3 90738569 90738875 -127298283 + AluJb SINE Alu 1 308 -4 580 174 38 61 chr3 90738875 90739007 -127298151 + L1PA16 LINE L1 6005 6133 -33 26 64 0 0 chr3 90739007 90739054 -127298104 + AT_rich Low_complexity Low_complexity 1 47 0 2405 28 3 0 chr3 90739087 90739426 -127297732 + AluY SINE Alu 1 340 0 1740 149 47 3 chr3 90740972 90741268 -127295890 + AluJb SINE Alu 3 311 -1 371 250 44 73 chr3 90741276 90741412 -127295746 - L2 LINE L2 -9 3304 3173 925 218 11 0 chr3 90741455 90741643 -127295515 - MER20 DNA MER1_type 0 219 30 274 313 119 88 chr3 90741708 90742168 -127294990 - L2 LINE L2 -1369 1945 1468 4765 35 10 2 chr3 90742168 90742744 -127294414 + L1PA3 LINE L1 5574 6154 -1 274 313 119 88 chr3 90742744 90742762 -127294396 - L2 LINE L2 -1846 1468 1452 32 26 0 0 chr3 90744351 90744390 -127292768 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr3 90746773 90746796 -127290362 + AT_rich Low_complexity Low_complexity 1 23 0 2000 135 3 6 chr3 90747186 90747497 -127289661 - AluSx SINE Alu -1 311 2 568 279 68 16 chr3 90747746 90747936 -127289222 - MIR SINE MIR -6 256 57 523 333 57 50 chr3 90747942 90748173 -127288985 - L2 LINE L2 -241 3072 2844 497 71 12 71 chr3 90748173 90748258 -127288900 + MADE1 DNA Mariner 1 80 0 523 333 57 50 chr3 90748258 90748631 -127288527 - L2 LINE L2 -469 2844 2457 877 196 49 10 chr3 90748636 90748840 -127288318 + L1MC1 LINE L1 6121 6332 -1 2171 104 0 0 chr3 90748840 90749127 -127288031 - AluSg1 SINE Alu -22 287 1 594 332 86 19 chr3 90749167 90749492 -127287666 - L2 LINE L2 -871 2443 2097 23 92 0 0 chr3 90750315 90750380 -127286778 + AT_rich Low_complexity Low_complexity 1 65 0 639 212 0 29 chr3 90753097 90753234 -127283924 + FLAM_A SINE Alu 1 133 0 183 330 220 0 chr3 90753302 90753411 -127283747 + L2 LINE L2 3133 3265 -7 710 262 156 13 chr3 90753613 90753838 -127283320 + MIR SINE MIR 6 262 0 225 0 0 0 chr3 90755024 90755049 -127282109 + (TG)n Simple_repeat Simple_repeat 1 25 0 200 316 0 0 chr3 90755653 90755710 -127281448 - L2 LINE L2 -1 3271 3215 548 135 10 0 chr3 90755864 90755968 -127281190 - L1MA4 LINE L1 -106 6194 6090 1420 219 45 22 chr3 90756683 90757040 -127280118 + MLT1A1 LTR MaLR 1 365 0 283 326 75 20 chr3 90757067 90757214 -127279944 + L2 LINE L2 3116 3270 -2 1299 174 128 143 chr3 90757291 90757360 -127279798 + MSTD LTR MaLR 19 88 -308 670 205 8 8 chr3 90757360 90757487 -127279671 + FLAM_A SINE Alu 1 127 -6 1299 174 128 143 chr3 90757487 90757804 -127279354 + MSTD LTR MaLR 88 368 -28 310 340 89 21 chr3 90758231 90758513 -127278645 - L2 LINE L2 -2808 506 206 262 61 0 0 chr3 90759248 90759281 -127277877 - MLT2B3 LTR ERVL 0 515 483 519 211 0 24 chr3 90759317 90759567 -127277591 + (TA)n Simple_repeat Simple_repeat 1 243 0 402 209 0 35 chr3 90759587 90759851 -127277307 + (TA)n Simple_repeat Simple_repeat 1 254 0 210 143 0 0 chr3 90759867 90759902 -127277256 + (TA)n Simple_repeat Simple_repeat 2 36 0 2361 191 68 29 chr3 90759952 90760438 -127276720 - MLT2B3 LTR ERVL -49 505 1 1934 134 0 0 chr3 90761355 90761632 -127275526 + AluSx SINE Alu 35 311 -1 817 281 61 8 chr3 90762119 90762365 -127274793 - MIR SINE MIR -2 260 2 22 35 0 0 chr3 90762845 90762874 -127274284 + AT_rich Low_complexity Low_complexity 1 29 0 879 56 0 0 chr3 90762892 90763000 -127274158 - LTR17 LTR ERV1 -456 324 217 1717 174 7 13 chr3 90763859 90764158 -127273000 + AluJo SINE Alu 1 297 -15 265 224 26 0 chr3 90764197 90764273 -127272885 + MER116 DNA Mariner 1 78 -2 562 236 110 37 chr3 90764924 90765115 -127272043 + MER63A DNA MER1_type 1 205 -5 189 0 0 0 chr3 90768993 90769014 -127268144 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 237 146 0 0 chr3 90769069 90769117 -127268041 + (GA)n Simple_repeat Simple_repeat 1 48 0 213 270 32 0 chr3 90769282 90769345 -127267813 + GA-rich Low_complexity Low_complexity 4 68 0 3416 239 35 9 chr3 90769688 90769917 -127267241 - Tigger6a DNA MER2_type -514 1083 861 4129 76 7 0 chr3 90769917 90770470 -127266688 - L1PA7 LINE L1 0 6154 5598 3416 239 35 9 chr3 90770470 90771101 -127266057 - Tigger6a DNA MER2_type -736 861 201 180 77 0 0 chr3 90771431 90771457 -127265701 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 658 236 136 10 chr3 90771513 90771712 -127265446 - MER58A DNA MER1_type 0 224 1 337 306 19 25 chr3 90771996 90772153 -127265005 - L2 LINE L2 -1305 2009 1854 23 33 0 0 chr3 90773112 90773142 -127264016 + AT_rich Low_complexity Low_complexity 1 30 0 285 176 39 39 chr3 90773556 90773658 -127263500 + (TATATG)n Simple_repeat Simple_repeat 3 104 0 282 116 0 0 chr3 90774270 90774313 -127262845 + (TA)n Simple_repeat Simple_repeat 1 43 0 283 333 89 30 chr3 90774797 90774932 -127262226 - L2 LINE L2 -221 3051 2909 381 342 87 51 chr3 90775206 90775680 -127261478 - L2 LINE L2 -529 2785 2295 332 271 27 9 chr3 90775984 90776096 -127261062 - MLT1L LTR MaLR -328 287 110 2203 114 0 7 chr3 90776662 90776969 -127260189 - AluSc SINE Alu -3 306 2 1091 174 132 82 chr3 90777641 90777997 -127259161 - THE1C LTR MaLR -1 374 1 227 338 14 65 chr3 90778309 90778448 -127258710 + L2 LINE L2 2952 3083 -189 2216 127 0 6 chr3 90778944 90779258 -127257900 + AluSx SINE Alu 1 312 0 39 0 0 0 chr3 90779226 90779265 -127257893 + AT_rich Low_complexity Low_complexity 1 39 0 2204 111 0 0 chr3 90783761 90784068 -127253090 + AluSg1 SINE Alu 1 307 -2 681 186 21 14 chr3 90785905 90786050 -127251108 - AluJb SINE Alu -31 281 136 2336 84 0 0 chr3 90786152 90786449 -127250709 + AluSx SINE Alu 1 297 -15 1581 230 3 16 chr3 90786542 90786912 -127250246 + MLT1A1 LTR MaLR 1 365 0 1387 118 10 5 chr3 90788766 90788969 -127248189 - AluSq SINE Alu -109 204 1 2061 198 50 31 chr3 90788981 90789457 -127247701 - L1MB8 LINE L1 0 6178 5694 22 0 0 0 chr3 90789844 90789866 -127247292 + AT_rich Low_complexity Low_complexity 1 22 0 425 330 75 17 chr3 90790348 90790521 -127246637 + MER5A DNA MER1_type 1 183 -6 270 236 0 0 chr3 90790809 90790864 -127246294 + AluS SINE Alu 228 282 -19 214 346 0 0 chr3 90791158 90791236 -127245922 + L2 LINE L2 2271 2348 -966 1667 225 82 31 chr3 90791236 90791712 -127245446 + MLT1D LTR MaLR 2 501 -4 21 0 0 0 chr3 90791779 90791800 -127245358 + AT_rich Low_complexity Low_complexity 1 21 0 188 292 62 62 chr3 90793775 90793840 -127243318 + MIR SINE MIR 36 100 -108 243 200 150 0 chr3 90794005 90794065 -127243093 - L2 LINE L2 -1 3312 3244 2805 151 17 15 chr3 90794070 90794595 -127242563 + L1MA4A LINE L1 5768 6293 -10 225 226 38 0 chr3 90795480 90795568 -127241590 + (TCTCTG)n Simple_repeat Simple_repeat 1 91 0 2066 131 0 0 chr3 90796209 90796507 -127240651 - AluSx SINE Alu -14 298 1 262 214 16 83 chr3 90796709 90796901 -127240257 + CT-rich Low_complexity Low_complexity 1 179 0 * 282 259 63 0 chr3 90796764 90796922 -127240236 + (CACCT)n Simple_repeat Simple_repeat 4 171 0 219 146 0 137 chr3 90796897 90797102 -127240056 + (TCCC)n Simple_repeat Simple_repeat 1 177 0 * 245 393 51 54 chr3 90798190 90798562 -127238596 - L2 LINE L2 0 3272 2902 469 239 145 13 chr3 90799780 90799939 -127237219 - MIR SINE MIR -11 251 72 1167 189 27 127 chr3 90800054 90800456 -127236702 - MLT1A1 LTR MaLR 0 365 4 643 242 0 0 chr3 90800564 90800692 -127236466 + MER94 DNA DNA 1 128 -6 2989 168 8 8 chr3 90801250 90801768 -127235390 + L1PA16 LINE L1 5522 6039 -127 1684 173 13 7 chr3 90801768 90802075 -127235083 + AluJb SINE Alu 1 309 -3 581 170 67 59 chr3 90802075 90802210 -127234948 + L1PA16 LINE L1 5998 6133 -33 26 64 0 0 chr3 90802210 90802257 -127234901 + AT_rich Low_complexity Low_complexity 1 47 0 2375 28 3 0 chr3 90802290 90802619 -127234539 + AluY SINE Alu 1 330 0 1705 149 47 3 chr3 90804165 90804461 -127232697 + AluJb SINE Alu 3 311 -1 374 250 44 73 chr3 90804469 90804605 -127232553 - L2 LINE L2 -9 3304 3173 915 218 11 0 chr3 90804648 90804836 -127232322 - MER20 DNA MER1_type 0 219 30 326 316 117 84 chr3 90804901 90805360 -127231798 - L2 LINE L2 -1369 1945 1468 4734 36 10 2 chr3 90805360 90805937 -127231221 + L1PA3 LINE L1 5574 6155 0 326 316 117 84 chr3 90805937 90805955 -127231203 - L2 LINE L2 -1846 1468 1452 32 26 0 0 chr3 90807544 90807583 -127229575 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr3 90808309 90808330 -127228828 + AT_rich Low_complexity Low_complexity 1 21 0 195 190 0 0 chr3 90809161 90809219 -127227939 + (CA)n Simple_repeat Simple_repeat 2 59 0 287 329 75 33 chr3 90809412 90809625 -127227533 - MLT1K LTR MaLR -205 383 162 520 190 10 0 chr3 90809741 90809841 -127227317 + L1PA16 LINE L1 6043 6143 -23 22 0 0 0 chr3 90810044 90810066 -127227092 + AT_rich Low_complexity Low_complexity 1 22 0 34 0 0 0 chr3 90810165 90810199 -127226959 + AT_rich Low_complexity Low_complexity 1 34 0 243 388 34 6 chr3 90810199 90810377 -127226781 - L2 LINE L2 -1254 2060 1878 756 197 0 0 chr3 90810530 90810657 -127226501 - MLT1B LTR MaLR -4 386 260 229 148 19 19 chr3 90810667 90810721 -127226437 + CT-rich Low_complexity Low_complexity 2 55 0 1633 201 0 7 chr3 90810736 90811045 -127226113 - AluJo SINE Alu -4 308 2 371 183 56 0 chr3 90811046 90811117 -127226041 - MLT1B LTR MaLR -115 275 201 23 0 0 0 chr3 90811157 90811180 -127225978 + AT_rich Low_complexity Low_complexity 1 23 0 266 268 0 0 chr3 90812048 90812104 -127225054 - L3 LINE CR1 -303 1274 1219 359 0 43 0 chr3 90812177 90812223 -127224935 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 6539 26 0 0 chr3 90812223 90812984 -127224174 - L1PA3 LINE L1 -6 6149 5389 436 0 0 0 chr3 90812984 90813036 -127224122 + L1P LINE L1 3732 3783 -2363 3566 86 8 0 chr3 90813036 90813524 -127223634 - L1PA10 LINE L1 -9 6159 5668 25 51 0 0 chr3 90813975 90814014 -127223144 + AT_rich Low_complexity Low_complexity 1 39 0 26 50 0 0 chr3 90814649 90814689 -127222469 + AT_rich Low_complexity Low_complexity 1 40 0 26 30 0 0 chr3 90814949 90814982 -127222176 + AT_rich Low_complexity Low_complexity 1 33 0 724 249 98 44 chr3 90815079 90815509 -127221649 + L1ME4a LINE L1 5490 5942 -179 22 88 0 0 chr3 90815613 90815670 -127221488 + AT_rich Low_complexity Low_complexity 1 57 0 21 71 0 0 chr3 90815994 90816036 -127221122 + AT_rich Low_complexity Low_complexity 1 42 0 14556 49 14 2 chr3 90816209 90818836 -127218322 + L1PA5 LINE L1 3517 6154 0 474 235 34 0 chr3 90819086 90819205 -127217953 + MER103 DNA DNA 19 141 -25 27 49 0 0 chr3 90819730 90819771 -127217387 + AT_rich Low_complexity Low_complexity 1 41 0 184 382 68 42 chr3 90821603 90821794 -127215364 - L2 LINE L2 0 3272 3077 243 274 55 75 chr3 90823487 90823633 -127213525 - MIR SINE MIR -73 189 47 217 388 0 0 chr3 90824365 90824432 -127212726 + L2 LINE L2 3197 3263 -9 351 355 65 6 chr3 90825484 90825653 -127211505 - MIR3 SINE MIR -19 189 11 188 302 0 0 chr3 90825900 90825953 -127211205 + L2 LINE L2 3216 3268 -4 216 363 111 15 chr3 90826109 90826244 -127210914 + MIR3 SINE MIR 33 180 -28 265 243 114 0 chr3 90826333 90826403 -127210755 + MIR3 SINE MIR 112 189 -19 464 181 71 79 chr3 90827740 90827867 -127209291 - MER94 DNA DNA -1 133 8 180 259 86 0 chr3 90828177 90828235 -127208923 + MIR SINE MIR 86 148 -114 194 268 0 18 chr3 90829646 90829702 -127207456 + MIR SINE MIR 152 206 -56 264 238 0 32 chr3 90829731 90829794 -127207364 - L2 LINE L2 -2 3311 3251 241 278 14 0 chr3 90830150 90830222 -127206936 - MER5A DNA MER1_type -107 82 10 1202 160 0 10 chr3 90831294 90831500 -127205658 - L1PB4 LINE L1 -2 6154 5951 1103 239 99 65 chr3 90831768 90832303 -127204855 + MLT1H1 LTR MaLR 1 553 -2 23 33 0 0 chr3 90834495 90834525 -127202633 + AT_rich Low_complexity Low_complexity 1 30 0 207 70 47 23 chr3 90835010 90835053 -127202105 + (TATAA)n Simple_repeat Simple_repeat 5 48 0 193 200 0 0 chr3 90835276 90835316 -127201842 - L3b LINE CR1 -300 1283 1244 266 198 6 0 chr3 90835681 90835735 -127201423 - MER5A DNA MER1_type -82 106 40 216 0 0 0 chr3 90835736 90835760 -127201398 + (ATG)n Simple_repeat Simple_repeat 2 25 0 1032 218 23 16 chr3 90837539 90837796 -127199362 + Charlie5 DNA MER1_type 2364 2622 0 24 0 0 0 chr3 90838101 90838125 -127199033 + AT_rich Low_complexity Low_complexity 1 24 0 263 222 12 0 chr3 90838736 90838817 -127198341 + (TA)n Simple_repeat Simple_repeat 2 83 0 22 56 0 0 chr3 90839941 90839977 -127197181 + AT_rich Low_complexity Low_complexity 1 36 0 190 253 72 24 chr3 90840194 90840277 -127196881 + L3b LINE CR1 1161 1247 -336 195 155 169 70 chr3 90840730 90840801 -127196357 - MIR3 SINE MIR -6 202 125 21 71 0 0 chr3 90841387 90841429 -127195729 + AT_rich Low_complexity Low_complexity 1 42 0 305 252 77 49 chr3 90844397 90844540 -127192618 + MLT1J LTR MaLR 105 251 -260 1394 204 69 20 chr3 90845075 90845423 -127191735 + Tigger6 DNA MER2_type 2 366 -717 8046 199 32 45 chr3 90845563 90848511 -127188647 - L1MA10 LINE L1 -16 6382 3455 2248 281 107 36 chr3 90848488 90851489 -127185669 - L1MA10 LINE L1 -3210 3000 1 * 28 48 0 0 chr3 90851950 90851992 -127185166 + AT_rich Low_complexity Low_complexity 1 42 0 2043 159 86 8 chr3 90852673 90853070 -127184088 - MSTA LTR MaLR 0 428 1 970 241 58 40 chr3 90853084 90853232 -127183926 - MER58B DNA MER1_type -2082 338 194 1718 170 149 11 chr3 90853232 90853608 -127183550 - MSTA LTR MaLR 0 428 1 970 241 58 40 chr3 90853608 90853714 -127183444 - MER58B DNA MER1_type -2226 194 74 338 0 24 0 chr3 90853714 90853756 -127183402 + (CA)n Simple_repeat Simple_repeat 2 44 0 970 241 58 40 chr3 90853756 90853828 -127183330 - MER58B DNA MER1_type -2346 74 5 21 0 0 0 chr3 90854119 90854140 -127183018 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr3 90854576 90854602 -127182556 + AT_rich Low_complexity Low_complexity 1 26 0 1173 182 5 14 chr3 90856831 90857051 -127180107 - Tigger5 DNA MER2_type 0 2323 2106 670 258 57 24 chr3 90857195 90857404 -127179754 + MIR SINE MIR 5 220 -42 748 297 121 40 chr3 90857663 90858135 -127179023 + MLT1F LTR MaLR 1 510 -32 795 214 115 45 chr3 90858136 90858379 -127178779 - MER2 DNA MER2_type 0 345 86 21 0 0 0 chr3 90858580 90858601 -127178557 + AT_rich Low_complexity Low_complexity 1 21 0 419 218 11 0 chr3 90858719 90858806 -127178352 - MER2 DNA MER2_type -257 88 1 21 0 0 0 chr3 90859230 90859251 -127177907 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 90859558 90859580 -127177578 + AT_rich Low_complexity Low_complexity 1 22 0 872 54 0 0 chr3 90859986 90860098 -127177060 - L1PA4 LINE L1 0 6155 6044 215 272 97 86 chr3 90860164 90860421 -127176737 + L2 LINE L2 1803 2062 -1252 188 311 98 0 chr3 90861225 90861286 -127175872 + MIR SINE MIR 110 176 -86 7845 152 72 3 chr3 90861321 90862719 -127174439 - Tigger1 DNA MER2_type 0 2418 925 504 126 17 25 chr3 90862722 90862841 -127174317 + L1MA3 LINE L1 3381 3498 -4067 477 50 0 0 chr3 90862852 90862912 -127174246 + (GGAA)n Simple_repeat Simple_repeat 3 62 0 14209 169 21 32 chr3 90862912 90864545 -127172613 + L1MA3 LINE L1 3462 5111 -2613 1191 32 11 38 chr3 90864545 90864730 -127172428 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 14209 169 21 32 chr3 90864730 90865027 -127172131 + L1MA3 LINE L1 5111 5410 -2314 1621 191 3 7 chr3 90865027 90865336 -127171822 + AluJb SINE Alu 1 308 0 14209 169 21 32 chr3 90865336 90865385 -127171773 + L1MA3 LINE L1 5410 5458 -2266 2097 80 0 0 chr3 90865385 90865661 -127171497 + AluY SINE Alu 36 311 0 14209 169 21 32 chr3 90865661 90867960 -127169198 + L1MA3 LINE L1 5458 7694 -30 3836 171 36 4 chr3 90868014 90868708 -127168450 - Tigger1 DNA MER2_type -1695 723 8 2459 40 3 3 chr3 90868864 90869162 -127167996 + AluY SINE Alu 1 298 -13 344 151 0 47 chr3 90869755 90869841 -127167317 + GA-rich Low_complexity Low_complexity 3 84 0 498 233 0 0 chr3 90869852 90869985 -127167173 + GA-rich Low_complexity Low_complexity 4 136 0 197 270 281 45 chr3 90870466 90870825 -127166333 - L2 LINE L2 -1 3312 2869 373 348 37 16 chr3 90870976 90871163 -127165995 + MIR SINE MIR 1 191 -71 191 174 232 43 chr3 90871158 90871227 -127165931 - MIR SINE MIR 0 262 181 * 260 292 0 42 chr3 90871482 90871554 -127165604 + L2 LINE L2 3204 3272 0 237 180 0 0 chr3 90871909 90871959 -127165199 + (TA)n Simple_repeat Simple_repeat 2 51 0 243 0 0 0 chr3 90872090 90872117 -127165041 + (TG)n Simple_repeat Simple_repeat 1 27 0 312 27 0 0 chr3 90872626 90872663 -127164495 + (TG)n Simple_repeat Simple_repeat 2 38 0 22 35 0 0 chr3 90874216 90874245 -127162913 + AT_rich Low_complexity Low_complexity 1 29 0 464 239 33 106 chr3 90874819 90874999 -127162159 - L2 LINE L2 -5 3308 3142 1435 270 91 38 chr3 90875515 90876064 -127161094 - MLT1E LTR MaLR -2 591 14 186 372 18 26 chr3 90876670 90876783 -127160375 - MIR SINE MIR -114 148 37 243 400 0 0 chr3 90877871 90877961 -127159197 + L3 LINE CR1 1013 1102 -475 885 45 0 0 chr3 90878208 90878318 -127158840 + (TTCC)n Simple_repeat Simple_repeat 3 112 0 1952 128 0 17 chr3 90878318 90878606 -127158552 - AluSc SINE Alu -26 283 1 24 32 0 0 chr3 90878733 90878764 -127158394 + AT_rich Low_complexity Low_complexity 1 31 0 243 0 0 0 chr3 90879343 90879370 -127157788 + (T)n Simple_repeat Simple_repeat 1 27 0 4172 78 17 5 chr3 90883072 90883653 -127153505 + L1PA7 LINE L1 5560 6147 -7 5882 139 38 17 chr3 90883934 90885399 -127151759 - L1PB1 LINE L1 0 6151 4646 284 335 231 12 chr3 90885487 90885738 -127151420 - L2 LINE L2 0 3272 2967 22 0 0 0 chr3 90886789 90886811 -127150347 + AT_rich Low_complexity Low_complexity 1 22 0 268 262 71 36 chr3 90887997 90888081 -127149077 + MIR SINE MIR 162 248 -14 21 0 0 0 chr3 90888082 90888103 -127149055 + AT_rich Low_complexity Low_complexity 1 21 0 259 185 54 76 chr3 90888230 90888322 -127148836 + MER97a DNA MER1_type? 84 173 -721 368 246 18 55 chr3 90888622 90888732 -127148426 + L2 LINE L2 3161 3266 -47 283 262 12 0 chr3 90888930 90889014 -127148144 - MIR SINE MIR 0 262 178 311 202 22 79 chr3 90889433 90889522 -127147636 + MIR SINE MIR 71 154 -108 662 279 31 14 chr3 90889546 90889768 -127147390 - L1MC4 LINE L1 -1032 7010 6785 24 32 0 0 chr3 90890147 90890178 -127146980 + AT_rich Low_complexity Low_complexity 1 31 0 555 247 116 65 chr3 90890335 90890719 -127146439 - MLT1J LTR MaLR -8 480 60 478 169 0 0 chr3 90890752 90890835 -127146323 - AluS SINE Alu -230 83 1 742 268 169 56 chr3 90891035 90891729 -127145429 - LTR41 LTR ERVL -1 772 1 193 387 77 7 chr3 90894359 90894514 -127142644 + L3b LINE CR1 1191 1356 -227 224 272 109 43 chr3 90894624 90894716 -127142442 + MIR SINE MIR 152 249 -13 28 79 0 0 chr3 90894731 90894794 -127142364 + AT_rich Low_complexity Low_complexity 1 63 0 945 66 0 0 chr3 90895794 90895916 -127141242 + L1PA7 LINE L1 6033 6154 0 2330 106 3 0 chr3 90896036 90896393 -127140765 - AluSq SINE Alu 0 358 1 1408 195 3 52 chr3 90897120 90897428 -127139730 + AluJo SINE Alu 1 293 -19 239 331 108 0 chr3 90899553 90899647 -127137511 + MIR3 SINE MIR 73 177 -31 1217 171 122 23 chr3 90900342 90900405 -127136753 - AluJo SINE Alu 0 607 552 1158 54 0 32 chr3 90900405 90900591 -127136567 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1217 171 122 23 chr3 90900591 90900799 -127136359 - AluJo SINE Alu -55 552 366 213 39 0 0 chr3 90900799 90900825 -127136333 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1662 158 25 28 chr3 90900825 90901110 -127136048 - AluSx SINE Alu -28 284 1 1217 171 122 23 chr3 90901110 90901210 -127135948 - AluJo SINE Alu -240 367 23 22 56 0 0 chr3 90901452 90901488 -127135670 + AT_rich Low_complexity Low_complexity 1 36 0 181 75 94 0 chr3 90901829 90901882 -127135276 + (TA)n Simple_repeat Simple_repeat 1 58 0 1529 226 21 31 chr3 90903041 90903462 -127133696 - L1M4 LINE L1 -3216 2930 2514 901 277 58 40 chr3 90903955 90904402 -127132756 - L1MC4 LINE L1 0 8042 7588 2250 114 11 6 chr3 90904491 90904843 -127132315 + L1PA14 LINE L1 5806 6159 -2 349 320 51 64 chr3 90905153 90905387 -127131771 + MIR SINE MIR 5 235 -27 298 133 0 0 chr3 90905837 90905882 -127131276 - L1MA5A LINE L1 -412 5885 5841 * 3496 206 14 30 chr3 90905877 90906717 -127130441 - L1 LINE L1 -2262 3884 3058 2338 75 0 3 chr3 90906772 90907065 -127130093 + AluY SINE Alu 1 292 -19 271 60 40 0 chr3 90907066 90907116 -127130042 + (TA)n Simple_repeat Simple_repeat 1 52 0 216 305 62 62 chr3 90908728 90908856 -127128302 - MIR SINE MIR -16 246 119 212 372 7 36 chr3 90908873 90909010 -127128148 + MIR3 SINE MIR 13 145 -63 24 32 0 0 chr3 90909138 90909169 -127127989 + AT_rich Low_complexity Low_complexity 1 31 0 49 76 0 0 chr3 90909614 90909719 -127127439 + AT_rich Low_complexity Low_complexity 1 105 0 310 316 169 0 chr3 90910095 90910231 -127126927 + MER5A DNA MER1_type 31 189 0 25 0 0 0 chr3 90911080 90911105 -127126053 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr3 90911347 90911370 -127125788 + AT_rich Low_complexity Low_complexity 1 23 0 333 326 71 41 chr3 90912153 90912447 -127124711 - L3 LINE CR1 -710 867 565 23 54 0 0 chr3 90914365 90914402 -127122756 + AT_rich Low_complexity Low_complexity 1 37 0 459 259 57 19 chr3 90914734 90914892 -127122266 + MER63A DNA MER1_type 9 172 -38 1623 193 45 8 chr3 90914957 90915309 -127121849 - MLT1A1 LTR MaLR 0 365 1 21 82 0 0 chr3 90915978 90916027 -127121131 + AT_rich Low_complexity Low_complexity 1 49 0 1871 122 0 22 chr3 90916338 90916608 -127120550 + AluSc SINE Alu 1 264 -45 557 259 79 83 chr3 90916878 90917144 -127120014 + LTR16C LTR ERVL 204 468 -23 239 355 130 0 chr3 90917273 90917411 -127119747 + MIR3 SINE MIR 33 188 -20 997 163 24 24 chr3 90917596 90917805 -127119353 - MER3 DNA MER1_type 0 209 1 2763 13 0 0 chr3 90917887 90918194 -127118964 + AluYb8 SINE Alu 1 307 -11 393 22 0 0 chr3 90920444 90920490 -127116668 + (TC)n Simple_repeat Simple_repeat 2 47 0 829 290 49 14 chr3 90920499 90920907 -127116251 - L1MC4a LINE L1 -528 5831 5523 766 219 21 55 chr3 90922725 90922962 -127114196 - L1MA9 LINE L1 -38 6274 6046 676 276 7 0 chr3 90922979 90923131 -127114027 - MER5A DNA MER1_type -6 183 31 2327 50 0 0 chr3 90923412 90923693 -127113465 - AluY SINE Alu -16 295 15 313 380 42 23 chr3 90924076 90924292 -127112866 + L2 LINE L2 2623 2842 -472 1475 190 39 7 chr3 90924700 90924984 -127112174 - AluSx SINE Alu -17 295 3 252 323 90 8 chr3 90926477 90926610 -127110548 - MIR SINE MIR -54 208 65 276 327 50 10 chr3 90926760 90926861 -127110297 - MIR SINE MIR -65 143 39 210 71 0 0 chr3 90927317 90927345 -127109813 + (TG)n Simple_repeat Simple_repeat 2 29 0 468 168 54 195 chr3 90927651 90927836 -127109322 + MIR SINE MIR 91 249 -13 412 366 56 21 chr3 90927852 90928139 -127109019 + L2 LINE L2 2045 2341 -973 255 133 0 0 chr3 90928482 90928527 -127108631 + (GGAA)n Simple_repeat Simple_repeat 3 47 0 571 231 21 86 chr3 90928527 90928713 -127108445 - MLT1J LTR MaLR -260 251 78 743 253 64 78 chr3 90928722 90929130 -127108028 - MER39 LTR ERV1 0 707 306 266 200 20 0 chr3 90929162 90929212 -127107946 - MER34 LTR ERV1 -491 51 1 283 385 58 22 chr3 90929385 90929744 -127107414 + L2 LINE L2 2665 3035 -237 688 133 0 0 chr3 90929785 90929890 -127107268 + AluJb SINE Alu 208 312 0 194 312 184 9 chr3 90930028 90930137 -127107021 + L2 LINE L2 3137 3264 -8 1096 193 63 38 chr3 90931599 90931915 -127105243 - MER5C DNA MER1_type 0 324 1 21 0 0 0 chr3 90933139 90933160 -127103998 + AT_rich Low_complexity Low_complexity 1 21 0 612 278 62 24 chr3 90935416 90935625 -127101533 - MIR SINE MIR -4 258 42 2518 43 0 0 chr3 90935766 90936071 -127101087 - AluY SINE Alu -6 305 1 262 299 70 32 chr3 90936700 90936857 -127100301 + MER5B DNA MER1_type 1 163 -15 187 324 235 0 chr3 90936984 90937086 -127100072 + L2 LINE L2 3143 3268 -4 2820 6 0 0 chr3 90937695 90938006 -127099152 + AluYa5 SINE Alu 1 311 0 21 36 0 0 chr3 90938935 90938963 -127098195 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr3 90939186 90939212 -127097946 + AT_rich Low_complexity Low_complexity 1 26 0 240 35 0 0 chr3 90939973 90939997 -127097161 + (TCG)n Simple_repeat Simple_repeat 1 53 0 240 35 0 0 chr3 90939997 90940026 -127097132 + (TCG)n Simple_repeat Simple_repeat 3 31 0 597 202 0 0 chr3 90940044 90940153 -127097005 - FLAM_A SINE Alu -33 109 1 415 302 63 25 chr3 90941145 90941304 -127095854 - MIR3 SINE MIR -12 196 32 1113 176 47 111 chr3 90941401 90941788 -127095370 + MLT1A1 LTR MaLR 4 365 0 1954 215 91 27 chr3 90941802 90942086 -127095072 - MLT1D LTR MaLR 0 505 178 1967 151 3 0 chr3 90942086 90942377 -127094781 - AluSx SINE Alu -20 292 1 1954 215 91 27 chr3 90942377 90942567 -127094591 - MLT1D LTR MaLR -327 178 1 2078 143 0 0 chr3 90942820 90943113 -127094045 + AluSx SINE Alu 5 297 -15 697 243 49 0 chr3 90944090 90944275 -127092883 - MLT1B LTR MaLR 0 390 197 277 286 0 13 chr3 90944282 90944359 -127092799 + GA-rich Low_complexity Low_complexity 2 77 0 705 165 85 30 chr3 90944383 90944547 -127092611 - MLT1B LTR MaLR -217 173 1 426 252 183 8 chr3 90945687 90945818 -127091340 - MER5A DNA MER1_type 0 189 36 192 150 50 10 chr3 90948364 90948464 -127088694 + (TG)n Simple_repeat Simple_repeat 1 104 0 318 26 0 0 chr3 90948512 90948551 -127088607 + (TG)n Simple_repeat Simple_repeat 2 40 0 372 356 52 0 chr3 90950752 90950867 -127086291 - L2 LINE L2 -14 3258 3138 35 24 0 0 chr3 90951147 90951189 -127085969 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr3 90952680 90952703 -127084455 + AT_rich Low_complexity Low_complexity 1 23 0 712 217 133 6 chr3 90953240 90953420 -127083738 - MER3 DNA MER1_type 0 209 7 216 0 0 0 chr3 90953621 90953645 -127083513 + (T)n Simple_repeat Simple_repeat 1 24 0 214 362 149 0 chr3 90953678 90953772 -127083386 + MIR3 SINE MIR 49 156 -52 23 33 0 0 chr3 90953802 90953832 -127083326 + AT_rich Low_complexity Low_complexity 1 30 0 1784 161 0 0 chr3 90954510 90954795 -127082363 + AluSx SINE Alu 1 285 -27 444 341 93 31 chr3 90956009 90956623 -127080535 - L2 LINE L2 -6 3307 2604 * 470 345 83 13 chr3 90956595 90956824 -127080334 - MIR SINE MIR -15 247 3 523 303 118 39 chr3 90957202 90957919 -127079239 - L1M4 LINE L1 -1940 4206 3433 852 339 70 35 chr3 90957921 90958547 -127078611 - L2 LINE L2 -2614 700 53 1276 325 108 15 chr3 90958824 90959497 -127077661 + L2 LINE L2 838 1573 -1741 2392 145 5 2 chr3 90959950 90960357 -127076801 - L1MA4A LINE L1 0 6303 5896 245 195 13 39 chr3 90961505 90961582 -127075576 + CT-rich Low_complexity Low_complexity 2 76 0 21 36 0 0 chr3 90961763 90961791 -127075367 + AT_rich Low_complexity Low_complexity 1 28 0 32 43 0 0 chr3 90961834 90961880 -127075278 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr3 90964839 90964868 -127072290 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr3 90965235 90965267 -127071891 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr3 90965699 90965720 -127071438 + AT_rich Low_complexity Low_complexity 1 21 0 333 245 176 0 chr3 90966051 90966153 -127071005 - L2 LINE L2 -1 3312 3193 1910 156 31 19 chr3 90966360 90966720 -127070438 - THE1B LTR MaLR 0 364 1 374 291 131 21 chr3 90967571 90967808 -127069350 + L2 LINE L2 3047 3309 -4 1203 137 0 0 chr3 90967846 90968014 -127069144 + AluSp SINE Alu 137 304 -9 25 0 0 0 chr3 90968028 90968053 -127069105 + AT_rich Low_complexity Low_complexity 1 25 0 323 278 122 88 chr3 90968343 90968663 -127068495 - L1ME4a LINE L1 -102 6019 5689 430 374 53 24 chr3 90969299 90969636 -127067522 - L1M4 LINE L1 -2025 4121 3775 772 273 55 31 chr3 90972922 90973178 -127063980 - MIR SINE MIR 0 262 1 323 171 71 143 chr3 90973413 90973553 -127063605 + L2 LINE L2 3184 3313 0 378 301 37 7 chr3 90973577 90973713 -127063445 + MLT1L LTR MaLR 420 559 -56 288 0 0 0 chr3 90974248 90974280 -127062878 + (TG)n Simple_repeat Simple_repeat 2 33 0 2069 116 0 0 chr3 90974280 90974564 -127062594 - AluSx SINE Alu -28 284 1 1240 169 50 46 chr3 90975375 90975635 -127061523 + AluJo SINE Alu 6 266 -46 647 174 47 34 chr3 90975837 90975986 -127061172 + L1PB2 LINE L1 6001 6151 0 189 398 57 16 chr3 90976299 90976422 -127060736 + MIR3 SINE MIR 3 130 -78 2372 84 0 3 chr3 90976870 90977179 -127059979 + AluSc SINE Alu 1 308 -1 860 204 6 12 chr3 90978230 90978402 -127058756 + AluJb SINE Alu 122 292 -20 223 326 109 22 chr3 90978555 90978647 -127058511 + MIR3 SINE MIR 78 177 -31 22 0 0 0 chr3 90978759 90978781 -127058377 + AT_rich Low_complexity Low_complexity 1 22 0 518 302 54 54 chr3 90981402 90981700 -127055458 + L2 LINE L2 3016 3313 0 2139 103 3 35 chr3 90981803 90982122 -127055036 + AluSq SINE Alu 1 309 -4 1378 187 46 78 chr3 90982193 90982549 -127054609 - MLT1A1 LTR MaLR 0 365 3 1368 189 39 28 chr3 90982777 90983063 -127054095 - AluJb SINE Alu -23 289 1 1272 206 60 26 chr3 90984430 90984550 -127052608 - MER45R DNA AcHobo -7 1574 1460 1795 135 82 28 chr3 90984550 90984906 -127052252 + THE1C LTR MaLR 1 375 0 1272 206 60 26 chr3 90984906 90985134 -127052024 - MER45R DNA AcHobo -121 1460 1214 2271 98 42 14 chr3 90985137 90985495 -127051663 - L1P4 LINE L1 -547 5621 5254 877 81 0 8 chr3 90985508 90985632 -127051526 + L1PA10 LINE L1 6046 6168 0 2999 198 43 4 chr3 90985642 90986319 -127050839 - MER45R DNA AcHobo -363 1218 516 454 214 0 0 chr3 90986414 90986498 -127050660 - MER45 DNA AcHobo 0 1581 1498 1992 136 0 0 chr3 90987751 90988030 -127049128 + AluSx SINE Alu 1 279 -33 234 105 0 0 chr3 90988092 90988130 -127049028 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 209 234 0 21 chr3 90988134 90988181 -127048977 - L2 LINE L2 -44 3269 3224 2263 82 0 0 chr3 90988451 90988730 -127048428 + AluY SINE Alu 1 279 -32 21 0 0 0 chr3 90990601 90990622 -127046536 + AT_rich Low_complexity Low_complexity 1 21 0 1522 239 19 30 chr3 90990626 90990995 -127046163 + MLT1A1 LTR MaLR 1 365 0 315 365 106 11 chr3 90991140 90991329 -127045829 + MIR SINE MIR 25 231 -31 2719 19 0 10 chr3 90991348 90991658 -127045500 + AluYa5 SINE Alu 1 307 -4 266 196 0 0 chr3 90992237 90992288 -127044870 - L2 LINE L2 0 3313 3263 462 261 70 6 chr3 90993830 90993987 -127043171 - L1ME LINE L1 -378 5743 5577 986 245 133 42 chr3 90994407 90994807 -127042351 + MLT1D LTR MaLR 2 437 -68 1573 264 130 29 chr3 90995090 90995402 -127041756 + L2 LINE L2 2001 2280 -1034 2122 142 0 0 chr3 90995402 90995711 -127041447 + AluSx SINE Alu 1 309 -3 1573 264 130 29 chr3 90995711 90996090 -127041068 + L2 LINE L2 2280 2762 -552 312 321 149 31 chr3 90996267 90996448 -127040710 + L2 LINE L2 2742 2900 -413 1692 153 64 3 chr3 90996448 90996730 -127040428 - AluSx SINE Alu -13 299 1 312 321 149 31 chr3 90996730 90996898 -127040260 + L2 LINE L2 2900 3124 -189 1953 215 117 4 chr3 90996946 90997398 -127039760 - MLT2B2 LTR ERVL 0 515 13 255 231 15 15 chr3 90997416 90997481 -127039677 + L2 LINE L2 3179 3243 -70 22 35 0 0 chr3 90997720 90997749 -127039409 + AT_rich Low_complexity Low_complexity 1 29 0 252 0 0 0 chr3 90997975 90998003 -127039155 + (CA)n Simple_repeat Simple_repeat 2 29 0 2227 98 3 10 chr3 90998112 90998407 -127038751 - AluSx SINE Alu -19 293 1 25 51 0 0 chr3 90998671 90998710 -127038448 + AT_rich Low_complexity Low_complexity 1 39 0 195 42 0 0 chr3 90998850 90998874 -127038284 + (CA)n Simple_repeat Simple_repeat 2 25 0 1990 113 16 22 chr3 91000886 91001197 -127035961 + AluSc SINE Alu 1 309 0 1683 167 10 7 chr3 91001391 91001685 -127035473 - AluJb SINE Alu -17 295 1 659 169 145 0 chr3 91001787 91001956 -127035202 - L1MC4a LINE L1 -140 7668 7497 1277 186 8 24 chr3 91001957 91002204 -127034954 - MLT1A1 LTR MaLR -1 364 122 1060 173 0 49 chr3 91002195 91002420 -127034738 - MLT1A1 LTR MaLR -138 227 14 * 618 234 14 7 chr3 91002424 91002569 -127034589 - L1MC4 LINE L1 -493 7549 7404 1642 117 12 0 chr3 91004541 91004781 -127032377 + AluSc SINE Alu 37 279 -30 2420 83 0 3 chr3 91005117 91005431 -127031727 + AluSp SINE Alu 1 313 0 1771 146 36 18 chr3 91005957 91006238 -127030920 + AluSg SINE Alu 1 286 -24 2505 50 0 3 chr3 91006428 91006731 -127030427 - AluY SINE Alu -9 302 1 446 149 0 0 chr3 91007195 91007269 -127029889 + L1MA6 LINE L1 6216 6289 -11 855 356 46 53 chr3 91007284 91007980 -127029178 + L2 LINE L2 2208 2898 -416 185 359 0 13 chr3 91008230 91008308 -127028850 + L2 LINE L2 3231 3307 -6 440 273 49 44 chr3 91009113 91009296 -127027862 + MIR3 SINE MIR 19 202 -6 234 316 60 26 chr3 91010245 91010362 -127026796 - MIR SINE MIR -25 237 117 291 280 85 17 chr3 91011261 91011347 -127025811 + MLT1H1 LTR MaLR 7 105 -450 2229 42 0 0 chr3 91011347 91011609 -127025549 - AluY SINE Alu -19 292 31 291 280 85 17 chr3 91011609 91011640 -127025518 + MLT1H1 LTR MaLR 105 132 -423 21 0 0 0 chr3 91011724 91011745 -127025413 + AT_rich Low_complexity Low_complexity 1 21 0 3065 269 58 34 chr3 91011880 91012860 -127024298 - L1MEc LINE L1 -5020 1376 421 196 26 26 53 chr3 91012860 91012898 -127024260 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2152 121 0 0 chr3 91012900 91013189 -127023969 - AluSx SINE Alu -23 289 1 3065 269 58 34 chr3 91013189 91013512 -127023646 - L1MEc LINE L1 -5975 421 39 30 0 0 0 chr3 91013658 91013688 -127023470 + AT_rich Low_complexity Low_complexity 1 30 0 219 343 104 19 chr3 91013743 91014011 -127023147 - L3 LINE CR1 -122 1455 1165 287 377 13 4 chr3 91014360 91014596 -127022562 - L1MEd LINE L1 -4542 1589 1352 313 295 119 25 chr3 91014742 91015027 -127022131 - L1MEd LINE L1 -4870 1249 938 380 84 0 3 chr3 91015035 91015098 -127022060 - Alu SINE Alu 0 300 248 364 282 82 43 chr3 91015098 91015163 -127021995 - L1MEd LINE L1 -5122 997 936 2114 69 6 79 chr3 91015163 91015480 -127021678 - AluSx SINE Alu -18 294 1 364 282 82 43 chr3 91015480 91015912 -127021246 - L1MEd LINE L1 -5183 936 450 487 151 9 85 chr3 91016183 91016289 -127020869 + FLAM_A SINE Alu 1 98 -44 6107 89 6 0 chr3 91120511 91121317 -126915841 - L1P LINE L1 -5334 812 2 2163 131 16 0 chr3 91121675 91122036 -126915122 - AluSx SINE Alu 0 366 1 246 346 83 90 chr3 91122810 91122970 -126914188 + L2 LINE L2 2865 3025 -247 2075 125 3 3 chr3 91122970 91123265 -126913893 - AluSg1 SINE Alu -14 295 1 246 346 83 90 chr3 91123265 91123514 -126913644 + L2 LINE L2 3025 3271 -1 1979 132 0 16 chr3 91123556 91123867 -126913291 - AluSq SINE Alu -7 306 1 368 275 0 11 chr3 91124019 91124110 -126913048 - L1MC4 LINE L1 -1339 6703 6614 203 194 0 0 chr3 91124110 91124146 -126913012 + (TA)n Simple_repeat Simple_repeat 2 37 0 367 291 77 64 chr3 91124180 91124384 -126912774 + MIR SINE MIR 31 241 -21 2250 108 0 3 chr3 91124608 91124915 -126912243 - AluSg SINE Alu -4 306 1 21 0 0 0 chr3 91126557 91126578 -126910580 + AT_rich Low_complexity Low_complexity 1 21 0 23 105 0 0 chr3 91126869 91126955 -126910203 + AT_rich Low_complexity Low_complexity 1 86 0 204 255 0 0 chr3 91127207 91127254 -126909904 + A-rich Low_complexity Low_complexity 1 47 0 752 246 53 42 chr3 91127902 91128187 -126908971 + MLT1D LTR MaLR 3 290 -215 584 253 40 13 chr3 91128187 91128337 -126908821 + L2 LINE L2 3159 3312 -1 442 374 23 26 chr3 91128508 91128799 -126908359 - L2 LINE L2 -256 3057 2769 2299 113 0 6 chr3 91128852 91129163 -126907995 + AluSx SINE Alu 1 309 -3 201 361 56 0 chr3 91129228 91129300 -126907858 - L2 LINE L2 -93 3179 3104 1494 190 10 14 chr3 91129854 91130149 -126907009 - AluJb SINE Alu -13 299 6 2240 114 0 0 chr3 91130358 91130666 -126906492 - AluSc SINE Alu -1 308 1 21 0 0 0 chr3 91132343 91132364 -126904794 + AT_rich Low_complexity Low_complexity 1 21 0 207 86 0 29 chr3 91133137 91133172 -126903986 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 2016 137 34 3 chr3 91135120 91135442 -126901716 - MER47A DNA MER2_type -8 358 27 22 35 0 0 chr3 91136007 91136036 -126901122 + AT_rich Low_complexity Low_complexity 1 29 0 1097 172 11 0 chr3 91136676 91136862 -126900296 - AluJb SINE Alu -2 310 123 213 94 0 0 chr3 91136924 91136956 -126900202 + (CA)n Simple_repeat Simple_repeat 2 33 0 400 48 0 0 chr3 91136981 91137043 -126900115 - L1P LINE L1 -800 5331 5270 1548 61 13 40 chr3 91137043 91137269 -126899889 + L1PA7 LINE L1 5933 6154 0 200 247 54 0 chr3 91137774 91137867 -126899291 + (CTA)n Simple_repeat Simple_repeat 1 98 0 1435 155 101 32 chr3 91137921 91138198 -126898960 + AluSq SINE Alu 2 297 -16 1704 150 31 11 chr3 91138616 91138903 -126898255 - AluJo SINE Alu -19 293 1 2045 125 10 3 chr3 91139610 91139906 -126897252 + AluSq SINE Alu 9 306 -7 528 311 79 15 chr3 91140598 91140865 -126896293 - L2 LINE L2 -18 3295 3012 229 299 47 9 chr3 91141135 91141242 -126895916 - L2 LINE L2 -1615 1699 1589 25 0 0 0 chr3 91142220 91142245 -126894913 + AT_rich Low_complexity Low_complexity 1 25 0 255 284 37 12 chr3 91143830 91143911 -126893247 + MIR3 SINE MIR 124 206 -2 908 29 0 0 chr3 91143925 91144027 -126893131 - AluY SINE Alu -15 296 195 1114 179 20 0 chr3 91144331 91144532 -126892626 - L1MC1 LINE L1 -5 6328 6124 2683 138 71 62 chr3 91144532 91145140 -126892018 - MER4B LTR ERV1 -1 778 1 3763 186 29 58 chr3 91145141 91145449 -126891709 - L1MC1 LINE L1 -206 6127 5812 1300 219 7 31 chr3 91145449 91145741 -126891417 - AluJb SINE Alu -27 285 1 3763 186 29 58 chr3 91145741 91145774 -126891384 - L1MC1 LINE L1 -521 5812 5780 1166 209 12 98 chr3 91145774 91145982 -126891176 - AluJb SINE Alu -2 300 128 450 0 0 0 chr3 91145982 91146032 -126891126 + (TG)n Simple_repeat Simple_repeat 1 50 0 1166 209 12 98 chr3 91146032 91146149 -126891009 - AluJb SINE Alu -174 128 3 3763 186 29 58 chr3 91146149 91146990 -126890168 - L1MC1 LINE L1 -553 5780 4980 30 0 0 0 chr3 91147286 91147316 -126889842 + AT_rich Low_complexity Low_complexity 1 30 0 515 206 0 71 chr3 91147540 91147666 -126889492 + MER8 DNA MER2_type 28 144 -95 3157 122 97 163 chr3 91147671 91148557 -126888601 - pTR5 LTR ERV1 0 2438 1611 566 190 57 63 chr3 91148658 91148816 -126888342 - pTR5 LTR ERV1 -1539 899 743 390 203 0 0 chr3 91148828 91148892 -126888266 + MER2 DNA MER2_type 282 345 0 249 343 51 9 chr3 91149765 91149948 -126887210 - MIR SINE MIR -59 203 17 249 167 0 0 chr3 91151129 91151183 -126885975 + (TG)n Simple_repeat Simple_repeat 1 54 0 376 339 72 17 chr3 91151814 91151994 -126885164 + MIR SINE MIR 23 212 -50 2272 97 3 7 chr3 91152773 91153083 -126884075 + AluSc SINE Alu 1 309 0 366 23 0 0 chr3 91154499 91154542 -126882616 + (TG)n Simple_repeat Simple_repeat 2 44 0 254 239 0 60 chr3 91155934 91156001 -126881157 + MIR SINE MIR 38 100 -162 1274 207 79 143 chr3 91156028 91156824 -126880334 + LTR1B LTR ERV1 1 745 -81 1684 114 103 0 chr3 91157066 91157329 -126879829 - AluSx SINE Alu -19 293 4 28 0 0 0 chr3 91157985 91158013 -126879145 + AT_rich Low_complexity Low_complexity 1 28 0 405 0 0 0 chr3 91158559 91158604 -126878554 + (TA)n Simple_repeat Simple_repeat 2 46 0 540 284 39 43 chr3 91159304 91159536 -126877622 - MIR SINE MIR -12 250 20 188 268 12 0 chr3 91160945 91161027 -126876131 + CT-rich Low_complexity Low_complexity 3 85 0 220 159 0 23 chr3 91161029 91161073 -126876085 - L2 LINE L2 -1 3312 3270 419 296 21 14 chr3 91162025 91162167 -126874991 - MIR SINE MIR -41 221 79 3753 160 68 20 chr3 91163157 91163945 -126873213 - LTR1B LTR ERV1 0 826 1 1159 229 66 71 chr3 91164151 91164441 -126872717 - MLT1C LTR MaLR 0 467 178 2068 129 10 0 chr3 91164441 91164744 -126872414 - AluSq SINE Alu -5 308 3 1159 229 66 71 chr3 91164744 91164920 -126872238 - MLT1C LTR MaLR -289 178 3 33 0 0 0 chr3 91164925 91164958 -126872200 + AT_rich Low_complexity Low_complexity 1 33 0 472 341 44 22 chr3 91167041 91167267 -126869891 - L2 LINE L2 -408 2906 2676 204 225 0 0 chr3 91167983 91168023 -126869135 + MIR3 SINE MIR 121 160 -48 208 323 84 77 chr3 91168042 91168197 -126868961 + MER5A DNA MER1_type 10 165 -24 * 462 294 21 28 chr3 91168059 91168202 -126868956 - MER5B DNA MER1_type -17 161 20 335 317 89 22 chr3 91168511 91168691 -126868467 + L1ME LINE L1 5592 5783 -338 34977 41 4 1 chr3 91168873 91173975 -126863183 - L1PA4 LINE L1 -6 6149 1034 221 128 21 21 chr3 91176306 91176353 -126860805 + T-rich Low_complexity Low_complexity 4 50 0 503 280 24 0 chr3 91176356 91176481 -126860677 - MER5B DNA MER1_type -50 128 1 402 325 119 12 chr3 91176990 91177150 -126860008 + MER5B DNA MER1_type 1 177 -1 345 323 168 6 chr3 91178165 91178332 -126858826 - MIR3 SINE MIR -12 196 3 257 305 59 141 chr3 91178567 91178921 -126858237 - L2 LINE L2 0 3272 2948 2640 108 3 3 chr3 91179169 91179530 -126857628 - THE1C LTR MaLR 0 375 15 21 0 0 0 chr3 91179997 91180018 -126857140 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 91180381 91180404 -126856754 + AT_rich Low_complexity Low_complexity 1 23 0 405 0 0 0 chr3 91180661 91180706 -126856452 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2018 126 11 0 chr3 91180706 91180983 -126856175 - AluSx SINE Alu -32 280 1 24 67 0 0 chr3 91180991 91181036 -126856122 + AT_rich Low_complexity Low_complexity 1 45 0 593 258 50 140 chr3 91181589 91181719 -126855439 + MIR SINE MIR 9 102 -160 1611 139 0 122 chr3 91181719 91182056 -126855102 - AluJb SINE Alu -6 296 1 593 258 50 140 chr3 91182056 91182204 -126854954 + MIR SINE MIR 102 262 0 414 186 0 108 chr3 91183468 91183597 -126853561 + L1MA9 LINE L1 6174 6288 -24 201 74 0 0 chr3 91183606 91183633 -126853525 + (TA)n Simple_repeat Simple_repeat 1 27 0 1690 136 0 0 chr3 91187456 91187699 -126849459 + AluSq SINE Alu 1 243 -70 845 138 8 0 chr3 91187699 91187829 -126849329 + AluSg/x SINE Alu 167 297 -13 23 0 0 0 chr3 91188017 91188040 -126849118 + AT_rich Low_complexity Low_complexity 1 23 0 237 273 61 0 chr3 91188896 91188917 -126848241 - MER5B DNA MER1_type -108 70 52 225 108 0 0 chr3 91188917 91188954 -126848204 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 237 273 61 0 chr3 91188954 91188998 -126848160 - MER5B DNA MER1_type -126 52 1 2024 131 3 0 chr3 91191659 91191956 -126845202 + AluSx SINE Alu 1 298 -14 21 36 0 0 chr3 91191964 91191992 -126845166 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 91192427 91192448 -126844710 + AT_rich Low_complexity Low_complexity 1 21 0 1648 207 45 24 chr3 91192901 91193282 -126843876 - MSTD LTR MaLR 0 396 8 1061 285 110 75 chr3 91193294 91193904 -126843254 - MLT-int LTR MaLR -489 1246 616 1781 159 64 17 chr3 91193904 91194250 -126842908 + THE1B LTR MaLR 1 362 -2 1685 244 33 7 chr3 91194252 91194675 -126842483 - MLT-int LTR MaLR -1138 597 164 2446 65 0 3 chr3 91194833 91195130 -126842028 + AluY SINE Alu 3 300 -11 432 0 0 0 chr3 91195130 91195178 -126841980 + (TA)n Simple_repeat Simple_repeat 2 49 0 23 0 0 0 chr3 91195241 91195264 -126841894 + AT_rich Low_complexity Low_complexity 1 23 0 28 48 0 0 chr3 91195789 91195831 -126841327 + AT_rich Low_complexity Low_complexity 1 42 0 964 153 62 48 chr3 91196395 91196604 -126840554 + AluJo SINE Alu 87 298 -14 347 327 127 3 chr3 91197032 91197259 -126839899 - MIR3 SINE MIR -11 251 1 183 282 244 8 chr3 91198671 91198802 -126838356 + MIR SINE MIR 45 206 -56 1123 167 0 0 chr3 91200796 91200976 -126836182 + AluSg/x SINE Alu 128 307 -3 249 336 10 0 chr3 91201313 91201417 -126835741 + L2 LINE L2 2931 3035 -237 389 304 35 9 chr3 91201633 91201748 -126835410 + L2 LINE L2 3192 3309 -4 184 253 11 0 chr3 91202969 91203024 -126834134 - MIR SINE MIR -89 119 63 960 189 12 0 chr3 91204094 91204258 -126832900 - FRAM SINE Alu -11 165 1 21 0 0 0 chr3 91205004 91205025 -126832133 + AT_rich Low_complexity Low_complexity 1 21 0 213 180 0 0 chr3 91205168 91205218 -126831940 + (ATG)n Simple_repeat Simple_repeat 3 52 0 221 311 291 0 chr3 91205221 91205372 -126831786 - MIR SINE MIR -2 260 66 3820 96 11 0 chr3 91205579 91206131 -126831027 - L1PA13 LINE L1 -6 6157 5600 263 268 299 24 chr3 91206216 91206343 -126830815 + MIR SINE MIR 99 260 -2 201 196 0 0 chr3 91206346 91206397 -126830761 + (CAT)n Simple_repeat Simple_repeat 3 53 0 316 286 63 50 chr3 91207430 91207650 -126829508 - MIR SINE MIR -40 222 8 636 323 41 5 chr3 91208945 91209165 -126827993 + MIR SINE MIR 26 253 -9 2066 121 0 14 chr3 91212995 91213292 -126823866 + AluSg SINE Alu 1 293 -17 250 135 0 0 chr3 91213479 91213516 -126823642 - L2 LINE L2 -10 3303 3267 2169 108 126 23 chr3 91214546 91214934 -126822224 - MSTA LTR MaLR 0 428 1 1237 163 21 9 chr3 91215295 91215528 -126821630 - L1PA16 LINE L1 -11 6155 5920 796 151 33 13 chr3 91215528 91215680 -126821478 + L1PA16 LINE L1 5773 5927 -239 849 251 25 4 chr3 91215949 91216188 -126820970 + L1ME1 LINE L1 5822 6065 -101 22 0 0 0 chr3 91216367 91216389 -126820769 + AT_rich Low_complexity Low_complexity 1 22 0 189 132 0 0 chr3 91218536 91218574 -126818584 + (A)n Simple_repeat Simple_repeat 1 38 0 590 224 105 41 chr3 91218594 91218813 -126818345 - MER106A DNA MER1_type -1 235 3 566 175 0 0 chr3 91218938 91219035 -126818123 + FLAM_A SINE Alu 1 97 -45 2190 151 23 0 chr3 91219038 91219388 -126817770 - THE1B LTR MaLR -6 358 1 1010 53 13 13 chr3 91219453 91219605 -126817553 + (TTTC)n Simple_repeat Simple_repeat 2 153 0 5085 106 7 8 chr3 91219619 91220374 -126816784 - L1PA11 LINE L1 -1 6173 5420 372 314 36 7 chr3 91220857 91220994 -126816164 - MIR SINE MIR -11 251 111 671 184 128 0 chr3 91223884 91224007 -126813151 + MER2 DNA MER2_type 1 139 -206 1975 133 35 32 chr3 91224007 91224345 -126812813 - MER1B DNA MER1_type 0 339 1 960 127 30 6 chr3 91224345 91224509 -126812649 + MER2 DNA MER2_type 132 299 -46 26 0 0 0 chr3 91224817 91224843 -126812315 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 91225288 91225309 -126811849 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr3 91225899 91225927 -126811231 + AT_rich Low_complexity Low_complexity 1 28 0 943 241 9 40 chr3 91226382 91226610 -126810548 + MER58A DNA MER1_type 1 221 -3 354 247 0 12 chr3 91226628 91226709 -126810449 + MIR SINE MIR 84 163 -99 213 255 191 11 chr3 91226725 91226819 -126810339 + MIR SINE MIR 141 251 -11 204 300 57 57 chr3 91226957 91227097 -126810061 + MIR SINE MIR 18 157 -105 748 237 65 46 chr3 91227313 91227638 -126809520 + L1ME3A LINE L1 5832 6162 -8 2212 110 3 0 chr3 91228589 91228889 -126808269 - AluSx SINE Alu -11 301 1 242 262 16 0 chr3 91233103 91233164 -126803994 - MLT1I LTR MaLR -2 407 346 1948 137 3 0 chr3 91233174 91233487 -126803671 - L1MA5A LINE L1 -4 6293 5980 2201 102 6 6 chr3 91233509 91233822 -126803336 - AluSp SINE Alu 0 313 1 581 256 88 71 chr3 91233884 91234192 -126802966 - MLT1I LTR MaLR -93 316 4 196 235 44 29 chr3 91235016 91235084 -126802074 + MIR SINE MIR 84 152 -110 222 261 14 29 chr3 91235428 91235497 -126801661 - MIR3 SINE MIR -1 207 140 401 270 230 30 chr3 91237506 91237941 -126799217 - L1M2 LINE L1 -5769 1080 507 1882 124 51 0 chr3 91238006 91238342 -126798816 - AluSx SINE Alu 0 350 1 351 297 172 43 chr3 91238572 91238781 -126798377 + MIR SINE MIR 18 253 -9 198 103 0 0 chr3 91240694 91240723 -126796435 + (A)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chr3 91240793 91240814 -126796344 + AT_rich Low_complexity Low_complexity 1 21 0 1850 176 0 13 chr3 91241243 91241556 -126795602 + AluJo SINE Alu 1 309 -3 224 111 22 0 chr3 91243285 91243330 -126793828 + (CA)n Simple_repeat Simple_repeat 1 46 0 2605 40 0 3 chr3 91244060 91244364 -126792794 + AluY SINE Alu 1 303 -8 298 292 229 57 chr3 91245295 91245487 -126791671 - MIR SINE MIR -19 243 19 2117 120 0 40 chr3 91247330 91247655 -126789503 + AluSx SINE Alu 1 312 0 1859 162 0 0 chr3 91249799 91250070 -126787088 + AluSx SINE Alu 1 271 -41 2290 70 0 7 chr3 91251247 91251569 -126785589 - AluSx SINE Alu 0 320 1 223 89 107 0 chr3 91252135 91252191 -126784967 + (CATAA)n Simple_repeat Simple_repeat 5 66 0 186 43 0 0 chr3 91254016 91254039 -126783119 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1785 150 49 0 chr3 91254706 91254992 -126782166 + AluSx SINE Alu 5 304 -8 201 246 0 0 chr3 91256014 91256079 -126781079 + CT-rich Low_complexity Low_complexity 3 67 0 25 75 0 0 chr3 91258104 91258157 -126779001 + AT_rich Low_complexity Low_complexity 1 53 0 26 0 0 0 chr3 91259308 91259334 -126777824 + AT_rich Low_complexity Low_complexity 1 26 0 1017 210 199 0 chr3 91260490 91260771 -126776387 + MER58B DNA MER1_type 3 339 -2 33 25 0 0 chr3 91261392 91261432 -126775726 + AT_rich Low_complexity Low_complexity 1 40 0 1182 266 56 8 chr3 91262415 91262619 -126774539 - MLT1A2 LTR MaLR 0 374 144 270 0 0 0 chr3 91262619 91262649 -126774509 + (GA)n Simple_repeat Simple_repeat 1 30 0 1182 266 56 8 chr3 91262649 91262801 -126774357 - MLT1A2 LTR MaLR -230 144 1 379 310 100 61 chr3 91263480 91263790 -126773368 - L2 LINE L2 -18 3295 2974 1980 177 8 14 chr3 91263890 91264257 -126772901 + MLT1A1 LTR MaLR 1 365 0 1717 226 68 47 chr3 91264506 91265037 -126772121 - MLT1F LTR MaLR 0 542 1 1905 231 48 32 chr3 91266023 91266561 -126770597 - MLT1E2 LTR MaLR 0 626 80 311 298 33 25 chr3 91266453 91266574 -126770584 - MLT2C1 LTR ERVL -205 192 71 * 264 329 112 13 chr3 91316627 91316779 -126720379 + L2 LINE L2 2168 2334 -980 245 292 31 0 chr3 91317149 91317214 -126719944 - MIR3 SINE MIR -11 197 131 2062 106 21 0 chr3 91319112 91319396 -126717762 - AluSc SINE Alu -19 290 1 32 43 0 0 chr3 91321477 91321523 -126715635 + AT_rich Low_complexity Low_complexity 1 46 0 545 304 49 10 chr3 91321676 91321879 -126715279 - MIR SINE MIR -19 243 34 239 326 222 28 chr3 91322519 91322663 -126714495 + MIR SINE MIR 18 189 -73 994 314 113 50 chr3 91323071 91324293 -126712865 - L2 LINE L2 0 3313 2005 34 24 0 0 chr3 91325278 91325319 -126711839 + AT_rich Low_complexity Low_complexity 1 41 0 2135 99 10 0 chr3 91325399 91325691 -126711467 - AluSx SINE Alu -17 295 1 1899 153 0 7 chr3 91327225 91327545 -126709613 - AluJb SINE Alu 0 321 4 296 309 45 108 chr3 91327719 91327942 -126709216 - MIR SINE MIR -52 210 2 199 200 0 0 chr3 91327946 91327986 -126709172 + L2 LINE L2 3267 3306 -7 221 374 35 50 chr3 91328005 91328203 -126708955 - L2 LINE L2 -274 2998 2804 261 282 26 0 chr3 91328250 91328328 -126708830 - MER94 DNA DNA -52 82 3 22 56 0 0 chr3 91330864 91330900 -126706258 + AT_rich Low_complexity Low_complexity 1 36 0 487 40 13 27 chr3 91331241 91331316 -126705842 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 232 245 230 29 chr3 91332804 91332943 -126704215 - MLT1L LTR MaLR -2 613 447 204 97 0 0 chr3 91333122 91333153 -126704005 + (TGG)n Simple_repeat Simple_repeat 1 31 0 265 411 81 0 chr3 91333881 91334066 -126703092 - L2 LINE L2 -562 2752 2553 188 328 31 16 chr3 91334086 91334150 -126703008 + MIR SINE MIR 2 66 -196 208 184 0 0 chr3 91334207 91334245 -126702913 + MIR SINE MIR 224 261 -1 277 170 0 0 chr3 91335043 91335090 -126702068 - MLT1F1 LTR MaLR -2 540 494 375 254 154 35 chr3 91335107 91335250 -126701908 - MLT1F1 LTR MaLR -247 295 168 1238 229 49 8 chr3 91335283 91335677 -126701481 - LTR48 LTR ERV1 -42 745 141 242 180 66 16 chr3 91335704 91335765 -126701393 - MER39 LTR ERV1 -578 66 3 486 283 21 21 chr3 91335775 91335948 -126701210 - MLT1F1 LTR MaLR -370 197 25 213 274 32 63 chr3 91335968 91336063 -126701095 + L2 LINE L2 3173 3264 -8 419 195 37 0 chr3 91336447 91336529 -126700629 + L1M2 LINE L1 5452 5536 -755 2067 220 110 22 chr3 91336530 91336568 -126700590 + LTR48B LTR ERV1 1 34 -610 1974 192 43 96 chr3 91336568 91337099 -126700059 - LTR9 LTR ERV1 0 612 119 2429 58 19 10 chr3 91337099 91337407 -126699751 - AluY SINE Alu 0 311 1 1974 192 43 96 chr3 91337407 91337521 -126699637 - LTR9 LTR ERV1 -493 119 1 2067 220 110 22 chr3 91337521 91338074 -126699084 + LTR48B LTR ERV1 34 644 0 302 116 59 0 chr3 91338076 91338145 -126699013 + L1P4 LINE L1 5538 5614 -551 342 0 0 0 chr3 91338309 91338347 -126698811 + (CA)n Simple_repeat Simple_repeat 2 39 0 402 85 0 0 chr3 91340002 91340061 -126697097 + (TG)n Simple_repeat Simple_repeat 2 60 0 244 235 127 69 chr3 91340699 91340918 -126696240 - L1MC4a LINE L1 -159 5962 5728 2126 92 30 3 chr3 91341486 91341781 -126695377 - AluSc SINE Alu -6 303 1 3009 182 117 14 chr3 91342514 91343237 -126693921 - LTR48 LTR ERV1 0 745 1 359 266 100 70 chr3 91343460 91343689 -126693469 - MLT1H LTR MaLR -218 331 96 267 356 67 0 chr3 91344257 91344361 -126692797 + L2 LINE L2 3195 3305 -8 227 173 0 39 chr3 91344691 91344743 -126692415 + T-rich Low_complexity Low_complexity 2 51 0 25 31 0 0 chr3 91344889 91344921 -126692237 + AT_rich Low_complexity Low_complexity 1 32 0 204 217 0 0 chr3 91345743 91345789 -126691369 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 62 58 0 0 chr3 91347347 91347451 -126689707 + AT_rich Low_complexity Low_complexity 1 104 0 426 20 0 0 chr3 91348158 91348209 -126688949 + (CA)n Simple_repeat Simple_repeat 2 52 0 1162 266 106 62 chr3 91348232 91349238 -126687920 - HAL1 LINE L1 -133 2374 1324 248 206 0 14 chr3 91349328 91349401 -126687757 - HAL1 LINE L1 -1448 1059 988 6006 97 22 0 chr3 91349440 91350411 -126686747 - L1PA10 LINE L1 -1 6167 5170 260 343 9 0 chr3 91350530 91350638 -126686520 - HAL1 LINE L1 -1612 895 787 343 252 19 39 chr3 91350916 91351019 -126686139 - L2 LINE L2 -17 3296 3196 2311 54 34 0 chr3 91353759 91354055 -126683103 - AluY SINE Alu -5 306 1 195 146 0 0 chr3 91354342 91354383 -126682775 + (CA)n Simple_repeat Simple_repeat 2 42 0 389 367 30 15 chr3 91354596 91354795 -126682363 + L2 LINE L2 2658 2859 -455 24 32 0 0 chr3 91357928 91357959 -126679199 + AT_rich Low_complexity Low_complexity 1 31 0 2082 127 7 3 chr3 91357959 91358267 -126678891 + AluSx SINE Alu 1 309 -3 1637 219 51 58 chr3 91358915 91359446 -126677712 - L1MD3 LINE L1 -2 7993 7467 21 0 0 0 chr3 91359859 91359880 -126677278 + AT_rich Low_complexity Low_complexity 1 21 0 199 308 0 0 chr3 91362901 91362953 -126674205 + MIR SINE MIR 65 116 -146 27 29 0 0 chr3 91363203 91363237 -126673921 + AT_rich Low_complexity Low_complexity 1 34 0 2141 105 7 0 chr3 91363316 91363611 -126673547 - AluSg SINE Alu -13 297 1 367 332 81 19 chr3 91363838 91364049 -126673109 - MIR SINE MIR -2 260 37 463 339 30 12 chr3 91365155 91365323 -126671835 + MIR3 SINE MIR 34 204 -4 505 292 153 0 chr3 91365631 91365847 -126671311 - MIR SINE MIR -2 260 12 556 251 23 12 chr3 91366794 91366965 -126670193 - MER104 DNA Tc2 -7 173 1 353 294 0 10 chr3 91366985 91367087 -126670071 - MIR SINE MIR -50 212 112 309 307 119 41 chr3 91367194 91367412 -126669746 - MIR SINE MIR -6 256 22 1052 162 13 57 chr3 91367771 91368000 -126669158 + MER20 DNA MER1_type 1 219 0 43 85 0 0 chr3 91369892 91369998 -126667160 + AT_rich Low_complexity Low_complexity 1 106 0 276 207 27 18 chr3 91370023 91370134 -126667024 + (TA)n Simple_repeat Simple_repeat 1 112 0 24 32 0 0 chr3 91370418 91370449 -126666709 + AT_rich Low_complexity Low_complexity 1 31 0 868 212 75 4 chr3 91370526 91370752 -126666406 - MER34B LTR ERV1 0 565 324 448 224 129 85 chr3 91370797 91370998 -126666160 - MER34B LTR ERV1 -334 231 22 395 277 14 28 chr3 91371398 91371539 -126665619 - L2 LINE L2 0 3313 3175 264 362 75 23 chr3 91371854 91372028 -126665130 - L2 LINE L2 -2186 1128 946 424 231 83 8 chr3 91372205 91372326 -126664832 - MIR SINE MIR -11 251 122 221 306 16 0 chr3 91372425 91372487 -126664671 - L2 LINE L2 -6 3266 3204 28 29 0 0 chr3 91374794 91374829 -126662329 + AT_rich Low_complexity Low_complexity 1 35 0 223 386 16 16 chr3 91376547 91376674 -126660484 + MIR SINE MIR 19 145 -63 22 0 0 0 chr3 91377073 91377095 -126660063 + AT_rich Low_complexity Low_complexity 1 22 0 1147 98 93 21 chr3 91378407 91378600 -126658558 + L1MA1 LINE L1 6090 6296 -6 39 0 0 0 chr3 91378600 91378639 -126658519 + AT_rich Low_complexity Low_complexity 1 39 0 2333 43 4 0 chr3 91378639 91378963 -126658195 + AluY SINE Alu 1 325 0 21 36 0 0 chr3 91379130 91379158 -126658000 + AT_rich Low_complexity Low_complexity 1 28 0 507 317 102 88 chr3 91380816 91381422 -126655736 - L2 LINE L2 -9 3304 2703 1410 203 17 33 chr3 91381491 91381792 -126655366 + Tigger7 DNA MER2_type 1 296 -437 395 281 11 0 chr3 91381774 91381863 -126655295 + Tigger7 DNA MER2_type 2398 2487 0 * 416 316 183 24 chr3 91381871 91382210 -126654948 + L3 LINE CR1 1184 1576 -1 188 286 0 0 chr3 91382670 91382712 -126654446 - L2 LINE L2 -22 3250 3209 1564 125 3 7 chr3 91383235 91383917 -126653241 - L1PA16 LINE L1 -1 6165 5406 353 350 92 0 chr3 91384163 91384283 -126652875 + MIR3 SINE MIR 14 144 -64 218 340 31 49 chr3 91384423 91384585 -126652573 - MIR3 SINE MIR 0 208 50 681 287 68 13 chr3 91384953 91385190 -126651968 - MIR SINE MIR 0 262 13 227 325 0 26 chr3 91385198 91385275 -126651883 - L2 LINE L2 -32 3281 3207 21 57 0 0 chr3 91386973 91387008 -126650150 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr3 91389435 91389467 -126647691 + AT_rich Low_complexity Low_complexity 1 32 0 21 82 0 0 chr3 91389602 91389651 -126647507 + AT_rich Low_complexity Low_complexity 1 49 0 215 233 0 0 chr3 91392104 91392147 -126645011 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 262 286 55 11 chr3 91392446 91392537 -126644621 + MIR SINE MIR 89 183 -79 23 0 0 0 chr3 91393074 91393097 -126644061 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr3 91395233 91395258 -126641900 + AT_rich Low_complexity Low_complexity 1 25 0 310 295 75 70 chr3 91396106 91396533 -126640625 - HAL1b LINE L1 -860 488 60 21 89 0 0 chr3 91396576 91396632 -126640526 + AT_rich Low_complexity Low_complexity 1 56 0 190 200 33 83 chr3 91397035 91397095 -126640063 - L2 LINE L2 -16 3256 3200 1045 283 84 27 chr3 91397195 91397682 -126639476 - MLT1E3 LTR MaLR 0 624 110 25 99 0 0 chr3 91398193 91398274 -126638884 + AT_rich Low_complexity Low_complexity 1 81 0 21 36 0 0 chr3 91398534 91398562 -126638596 + AT_rich Low_complexity Low_complexity 1 28 0 196 371 48 8 chr3 91398658 91398782 -126638376 + L2 LINE L2 3172 3300 -13 216 97 0 0 chr3 91399081 91399112 -126638046 + (T)n Simple_repeat Simple_repeat 1 31 0 25 51 0 0 chr3 91399526 91399565 -126637593 + AT_rich Low_complexity Low_complexity 1 39 0 440 208 9 0 chr3 91400263 91400369 -126636789 + CT-rich Low_complexity Low_complexity 2 108 0 2372 102 34 3 chr3 91401532 91401885 -126635273 - THE1B LTR MaLR 0 364 1 2454 51 3 0 chr3 91402064 91402360 -126634798 - AluY SINE Alu -14 297 1 24 0 0 0 chr3 91402600 91402624 -126634534 + AT_rich Low_complexity Low_complexity 1 24 0 1943 111 3 23 chr3 91402798 91403104 -126634054 - AluSx SINE Alu -12 300 1 207 316 68 8 chr3 91403916 91404033 -126633125 - L2 LINE L2 -474 2840 2717 1548 101 0 24 chr3 91404368 91404616 -126632542 + L1PA10 LINE L1 5909 6150 -18 332 307 65 13 chr3 91404643 91404796 -126632362 + MIR SINE MIR 99 259 -3 21 36 0 0 chr3 91406254 91406282 -126630876 + AT_rich Low_complexity Low_complexity 1 28 0 216 328 32 48 chr3 91406912 91407037 -126630121 + L2 LINE L2 2929 3051 -221 201 313 47 0 chr3 91410684 91410748 -126626410 + MIR SINE MIR 190 256 -6 237 139 0 0 chr3 91411821 91411864 -126625294 + (CA)n Simple_repeat Simple_repeat 2 44 0 731 168 11 11 chr3 91411875 91412054 -126625104 + (CA)n Simple_repeat Simple_repeat 2 180 0 342 45 0 0 chr3 91413977 91414021 -126623137 + (CA)n Simple_repeat Simple_repeat 2 45 0 279 136 0 0 chr3 91414233 91414292 -126622866 + (T)n Simple_repeat Simple_repeat 1 59 0 289 326 116 0 chr3 91414774 91414921 -126622237 + MIR3 SINE MIR 42 205 -3 255 203 0 0 chr3 91415867 91415936 -126621222 + GA-rich Low_complexity Low_complexity 2 70 0 238 239 30 15 chr3 91417596 91417663 -126619495 - MIR SINE MIR -109 153 86 13716 148 42 6 chr3 91420659 91422971 -126614187 + Tigger1 DNA MER2_type 24 2418 0 1916 269 78 11 chr3 91426427 91426966 -126610192 - MLT1E LTR MaLR 0 593 19 24 32 0 0 chr3 91427433 91427464 -126609694 + AT_rich Low_complexity Low_complexity 1 31 0 2186 98 3 17 chr3 91429461 91429757 -126607401 + AluSp SINE Alu 1 292 -21 189 0 0 0 chr3 91432476 91432497 -126604661 + (TG)n Simple_repeat Simple_repeat 2 22 0 612 211 139 0 chr3 91433163 91433329 -126603829 + MER5A DNA MER1_type 1 189 0 22 56 0 0 chr3 91435886 91435922 -126601236 + AT_rich Low_complexity Low_complexity 1 36 0 3627 198 53 28 chr3 91436297 91437188 -126599970 - L1MB7 LINE L1 -9 6175 5263 473 196 31 0 chr3 91437191 91437288 -126599870 - L1MB7 LINE L1 -837 5309 5210 380 233 9 43 chr3 91437284 91437400 -126599758 - L1MB7 LINE L1 -1382 4764 4653 * 22 70 0 0 chr3 91437465 91437508 -126599650 + AT_rich Low_complexity Low_complexity 1 43 0 185 316 63 13 chr3 91437951 91438030 -126599128 + L2 LINE L2 3153 3235 -37 * 282 365 81 14 chr3 91438007 91438155 -126599003 + L2 LINE L2 3115 3272 0 21 0 0 0 chr3 91439279 91439300 -126597858 + AT_rich Low_complexity Low_complexity 1 21 0 309 26 0 0 chr3 91440274 91440312 -126596846 + (CA)n Simple_repeat Simple_repeat 2 39 0 27 0 0 0 chr3 91440867 91440894 -126596264 + AT_rich Low_complexity Low_complexity 1 27 0 331 272 9 35 chr3 91441574 91441688 -126595470 + L2 LINE L2 3201 3311 -2 373 317 164 19 chr3 91444691 91444899 -126592259 + MIR SINE MIR 21 258 -4 22 80 0 0 chr3 91445989 91446039 -126591119 + AT_rich Low_complexity Low_complexity 1 50 0 1692 223 138 14 chr3 91448260 91449097 -126588061 - L1ME1 LINE L1 -223 6012 5062 1414 251 80 23 chr3 91449138 91449802 -126587356 - L1ME1 LINE L1 -3230 2985 2284 1343 140 77 0 chr3 91449802 91450024 -126587134 - AluSx SINE Alu -73 239 1 389 232 114 34 chr3 91450025 91450288 -126586870 - L1ME1 LINE L1 -4073 2323 2040 358 334 94 42 chr3 91450467 91450498 -126586660 - L1ME1 LINE L1 -6036 360 332 2101 99 6 43 chr3 91450498 91450822 -126586336 + AluSx SINE Alu 1 312 0 358 334 94 42 chr3 91450822 91451098 -126586060 - L1ME1 LINE L1 -6064 332 37 * 384 293 41 31 chr3 91451097 91451398 -126585760 - L1MEc LINE L1 -5164 940 642 402 349 20 32 chr3 91451690 91452034 -126585124 - L1MEc LINE L1 -5630 440 101 232 174 0 0 chr3 91452541 91452587 -126584571 + LTR66 LTR ERVL 394 439 -171 212 83 0 28 chr3 91452597 91452633 -126584525 + (TA)n Simple_repeat Simple_repeat 2 36 0 46 45 0 0 chr3 91454464 91454531 -126582627 + AT_rich Low_complexity Low_complexity 1 67 0 757 357 37 10 chr3 91454639 91455048 -126582110 - MLT1J2 LTR MaLR -10 440 21 204 191 79 101 chr3 91455282 91455371 -126581787 - MIR SINE MIR -174 88 2 180 111 0 0 chr3 91456864 91456891 -126580267 + (CA)n Simple_repeat Simple_repeat 2 28 0 249 250 0 0 chr3 91457151 91457211 -126579947 + GA-rich Low_complexity Low_complexity 3 62 0 27 29 0 0 chr3 91460045 91460079 -126577079 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr3 91460179 91460200 -126576958 + AT_rich Low_complexity Low_complexity 1 21 0 2158 106 0 7 chr3 91460200 91460493 -126576665 - AluSg SINE Alu -19 291 1 668 277 106 4 chr3 91461748 91461983 -126575175 + MER46C DNA MER2_type 80 338 0 21 0 0 0 chr3 91462846 91462867 -126574291 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 91464628 91464649 -126572509 + AT_rich Low_complexity Low_complexity 1 21 0 384 293 19 19 chr3 91464737 91464843 -126572315 - L2 LINE L2 -1 3312 3207 282 29 0 0 chr3 91464936 91464971 -126572187 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 318 340 75 46 chr3 91465470 91465711 -126571447 - L2 LINE L2 -464 2850 2603 227 273 15 0 chr3 91466015 91466081 -126571077 + MIR SINE MIR 138 204 -58 26 30 0 0 chr3 91466081 91466114 -126571044 + AT_rich Low_complexity Low_complexity 1 33 0 235 221 0 15 chr3 91466114 91466182 -126570976 - L1MC4 LINE L1 -1342 6700 6634 311 301 89 16 chr3 91466793 91466916 -126570242 - MIR SINE MIR -12 250 119 2029 21 0 0 chr3 91467046 91467311 -126569847 + L1PA4 LINE L1 5904 6168 0 209 409 39 24 chr3 91467456 91467583 -126569575 - L2 LINE L2 -27 3245 3117 413 342 46 19 chr3 91467683 91467990 -126569168 - MER102b DNA MER1_type 0 341 27 548 72 0 12 chr3 91470286 91470369 -126566789 + (CCA)n Simple_repeat Simple_repeat 1 82 0 263 280 67 0 chr3 91471387 91471462 -126565696 + MIR3 SINE MIR 111 190 -18 1368 146 9 0 chr3 91472604 91472816 -126564342 + AluJb SINE Alu 84 297 -15 200 33 0 33 chr3 91472817 91472847 -126564311 + (TA)n Simple_repeat Simple_repeat 1 29 0 227 245 112 51 chr3 91473330 91473428 -126563730 + MIR SINE MIR 44 147 -115 300 339 175 0 chr3 91473872 91474055 -126563103 - MIR SINE MIR -3 259 45 227 176 20 20 chr3 91476671 91476722 -126560436 + (TA)n Simple_repeat Simple_repeat 1 51 0 297 109 0 0 chr3 91477396 91477442 -126559716 + (TA)n Simple_repeat Simple_repeat 1 46 0 43 56 0 0 chr3 91477613 91477684 -126559474 + AT_rich Low_complexity Low_complexity 1 71 0 222 91 0 0 chr3 91477985 91478018 -126559140 + (CA)n Simple_repeat Simple_repeat 2 34 0 261 57 0 0 chr3 91478355 91478390 -126558768 + (A)n Simple_repeat Simple_repeat 1 35 0 2357 83 0 22 chr3 91480063 91480377 -126556781 + AluY SINE Alu 1 307 -4 22 0 0 0 chr3 91480616 91480638 -126556520 + AT_rich Low_complexity Low_complexity 1 22 0 3378 169 35 0 chr3 91482338 91482970 -126554188 - L1MC1 LINE L1 0 6333 5680 186 379 11 23 chr3 91483005 91483092 -126554066 - L2 LINE L2 -993 2321 2236 244 398 47 35 chr3 91483120 91483376 -126553782 - L2 LINE L2 -22 3250 2992 285 188 16 0 chr3 91483982 91484046 -126553112 + L1MB1 LINE L1 6103 6167 -1 248 417 0 0 chr3 91485102 91485198 -126551960 + (CTAGGG)n Simple_repeat Simple_repeat 3 98 0 397 293 16 41 chr3 91486150 91486273 -126550885 - MER5B DNA MER1_type -4 174 55 480 192 0 30 chr3 91486312 91486411 -126550747 + MIR SINE MIR 73 168 -94 1666 256 59 32 chr3 91486425 91487002 -126550156 - MER77 LTR ERV1 -1 604 54 348 241 38 0 chr3 91487131 91487210 -126549948 + L2 LINE L2 3231 3312 -1 226 357 31 0 chr3 91487362 91487460 -126549698 - MER5B DNA MER1_type -1 177 77 186 184 53 0 chr3 91487470 91487508 -126549650 + L2 LINE L2 3217 3256 -16 181 254 28 42 chr3 91487747 91487818 -126549340 + MIR3 SINE MIR 112 181 -27 1547 203 3 10 chr3 91488301 91488618 -126548540 + AluJb SINE Alu 1 315 0 298 319 6 18 chr3 91491549 91491718 -126545440 + (TG)n Simple_repeat Simple_repeat 1 167 0 2274 99 7 0 chr3 91492622 91492926 -126544232 - AluSc SINE Alu -3 306 1 625 143 63 91 chr3 91492952 91493127 -126544031 + MER58C DNA MER1_type 45 214 -1 382 266 152 25 chr3 91493135 91493293 -126543865 - MIR SINE MIR -54 208 31 1888 128 0 17 chr3 91494524 91494813 -126542345 - AluSx SINE Alu -6 306 23 202 205 0 0 chr3 91495962 91496001 -126541157 + GA-rich Low_complexity Low_complexity 2 40 0 1744 165 70 20 chr3 91497471 91497828 -126539330 - THE1C LTR MaLR 0 375 1 2024 150 19 14 chr3 91502756 91502791 -126534367 - MLT1A1 LTR MaLR 0 365 332 1429 217 105 0 chr3 91502791 91503105 -126534053 + MER7A DNA MER2_type 2 346 0 2024 150 19 14 chr3 91503105 91503430 -126533728 - MLT1A1 LTR MaLR -33 332 3 877 206 18 57 chr3 91503432 91503562 -126533596 - MER58A DNA MER1_type -2197 223 104 2123 136 0 0 chr3 91503562 91503871 -126533287 + AluSg SINE Alu 1 309 -1 877 206 18 57 chr3 91503871 91503968 -126533190 - MER58A DNA MER1_type -2316 104 5 458 240 152 8 chr3 91504332 91504457 -126532701 - MER5B DNA MER1_type -19 159 17 259 191 128 78 chr3 91505656 91505797 -126531361 - MLT1J1 LTR MaLR -249 197 50 2034 142 3 13 chr3 91506069 91506380 -126530778 - AluSq SINE Alu -5 308 1 214 246 35 0 chr3 91506416 91506473 -126530685 + MIR SINE MIR 51 109 -99 1216 286 130 64 chr3 91506479 91507350 -126529808 - L2 LINE L2 0 3313 2376 2313 79 0 13 chr3 91507350 91507665 -126529493 - AluY SINE Alu 0 311 1 1216 286 130 64 chr3 91507665 91507808 -126529350 - L2 LINE L2 -937 2376 2244 346 309 0 0 chr3 91507810 91507904 -126529254 + MIR SINE MIR 104 197 -65 21 57 0 0 chr3 91511371 91511406 -126525752 + AT_rich Low_complexity Low_complexity 1 35 0 195 42 0 0 chr3 91518628 91518652 -126518506 + (A)n Simple_repeat Simple_repeat 1 24 0 1821 164 3 23 chr3 91518652 91518942 -126518216 + AluJb SINE Alu 1 286 -26 315 85 0 0 chr3 91518942 91518989 -126518169 + (CATA)n Simple_repeat Simple_repeat 2 48 0 1821 164 3 23 chr3 91518989 91519008 -126518150 + AluJb SINE Alu 286 304 -8 197 179 0 36 chr3 91521090 91521146 -126516012 + (CATATA)n Simple_repeat Simple_repeat 5 58 0 268 285 8 41 chr3 91521313 91521370 -126515788 + (TA)n Simple_repeat Simple_repeat 2 59 -61 906 241 108 19 chr3 91521370 91521685 -126515473 + MER2 DNA MER2_type 2 344 0 268 285 8 41 chr3 91521685 91521750 -126515408 + (TA)n Simple_repeat Simple_repeat 59 120 0 2853 10 0 0 chr3 91523248 91523558 -126513600 + AluYb8 SINE Alu 1 310 -8 3015 157 61 38 chr3 91525500 91525869 -126511289 + LTR8A LTR ERV1 1 376 -315 2205 128 19 27 chr3 91525869 91526236 -126510922 - THE1B LTR MaLR 0 364 1 3015 157 61 38 chr3 91526236 91526560 -126510598 + LTR8A LTR ERV1 376 691 0 905 280 4 0 chr3 91526769 91526999 -126510159 + Charlie1a DNA MER1_type 1 231 -1224 923 184 0 6 chr3 91526999 91527157 -126510001 - MLT1B LTR MaLR 0 390 234 1596 203 9 3 chr3 91527159 91527489 -126509669 + MLT1B-int LTR MaLR 66 397 -974 471 200 0 73 chr3 91527513 91527623 -126509535 - MLT1-int LTR MaLR -886 485 384 * 1965 259 37 110 chr3 91527615 91528636 -126508522 + MLT1B-int LTR MaLR 405 1351 -20 513 242 115 13 chr3 91528638 91528795 -126508363 + MLT1B LTR MaLR 2 174 -216 430 213 0 0 chr3 91528962 91529037 -126508121 - MLT-int LTR MaLR -975 760 686 812 184 7 0 chr3 91529085 91529226 -126507932 + MLT1B LTR MaLR 249 390 0 207 0 0 0 chr3 91529312 91529335 -126507823 + (A)n Simple_repeat Simple_repeat 1 23 0 234 357 20 31 chr3 91530000 91530098 -126507060 + MIR SINE MIR 25 121 -87 205 337 72 0 chr3 91530103 91530186 -126506972 - L2 LINE L2 -4 3309 3221 252 222 48 0 chr3 91531194 91531257 -126505901 - MLT1J LTR MaLR 0 511 446 1853 65 4 0 chr3 91531275 91531505 -126505653 - AluY SINE Alu -5 306 76 1687 179 150 11 chr3 91531636 91532017 -126505141 - Tigger2a DNA MER2_type 0 434 1 3597 145 22 38 chr3 91532276 91532957 -126504201 - L1PA11 LINE L1 -918 5228 4559 6314 85 24 8 chr3 91532962 91533868 -126503290 + L1PA11 LINE L1 5254 6174 0 1769 150 7 42 chr3 91534050 91534357 -126502801 - AluSx SINE Alu -14 298 3 250 285 152 42 chr3 91534639 91534804 -126502354 + MIR3 SINE MIR 3 185 -23 451 273 40 74 chr3 91536413 91536704 -126500454 - MLT1H1 LTR MaLR -270 325 3 228 353 17 26 chr3 91536741 91536857 -126500301 - MIR SINE MIR -24 238 124 2143 114 3 16 chr3 91536906 91537221 -126499937 + AluSp SINE Alu 1 311 -2 1105 367 40 19 chr3 91537854 91538502 -126498656 + HERV16 LTR ERVL 915 1576 -3420 284 252 166 33 chr3 91538560 91538711 -126498447 + HERV16 LTR ERVL 1707 1877 -3119 306 301 19 0 chr3 91538988 91539091 -126498067 + HERV16 LTR ERVL 2591 2695 -2790 718 296 75 40 chr3 91539127 91539579 -126497579 + HERV16 LTR ERVL 3725 4192 -1462 534 365 52 17 chr3 91539610 91540485 -126496673 + HERV16 LTR ERVL 4151 5122 -532 252 379 0 0 chr3 91540513 91540629 -126496529 + HERV16 LTR ERVL 5211 5326 -438 258 345 47 74 chr3 91540819 91541115 -126496043 + LTR16C LTR ERVL 4 291 -200 2279 174 24 16 chr3 91541187 91541612 -126495546 - MSTA LTR MaLR 0 428 1 655 245 0 0 chr3 91541693 91541832 -126495326 + MLT1A1 LTR MaLR 1 139 -226 1842 170 12 12 chr3 91542292 91542659 -126494499 + MLT2A2 LTR ERVL 1 297 -156 779 143 8 0 chr3 91542911 91543037 -126494121 - AluJb SINE Alu -9 303 177 2590 36 7 3 chr3 91543099 91543408 -126493750 - AluY SINE Alu -1 310 1 403 63 32 0 chr3 91543666 91543729 -126493429 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 270 206 0 0 chr3 91543744 91543807 -126493351 + (CA)n Simple_repeat Simple_repeat 1 63 0 1756 140 119 21 chr3 91546657 91547043 -126490115 - L1PA16 LINE L1 -5 6161 5738 21 0 0 0 chr3 91547075 91547096 -126490062 + AT_rich Low_complexity Low_complexity 1 21 0 732 286 31 24 chr3 91547435 91547690 -126489468 - MIR SINE MIR -5 257 1 26 30 0 0 chr3 91547917 91547950 -126489208 + AT_rich Low_complexity Low_complexity 1 33 0 307 390 13 0 chr3 91548301 91548455 -126488703 - L3 LINE CR1 -1 1576 1421 183 381 100 12 chr3 91548477 91548637 -126488521 + MIR3 SINE MIR 31 204 -4 705 283 100 41 chr3 91548776 91548940 -126488218 - MLT1G1 LTR MaLR -29 566 413 2766 174 25 81 chr3 91548940 91549671 -126487487 + LTR8 LTR ERV1 2 691 0 705 283 100 41 chr3 91549671 91549965 -126487193 - MLT1G1 LTR MaLR -182 413 81 198 323 65 61 chr3 91549971 91550200 -126486958 - L3 LINE CR1 -295 1282 1053 454 188 10 0 chr3 91550240 91550341 -126486817 + Charlie1 DNA MER1_type 52 153 -2608 676 244 154 19 chr3 91550365 91550734 -126486424 - LTR37A LTR ERV1 0 426 8 1024 194 79 18 chr3 91550736 91551065 -126486093 + Charlie1 DNA MER1_type 2412 2760 -1 825 229 41 95 chr3 91551084 91551489 -126485669 + MER34 LTR ERV1 1 454 -131 202 187 0 40 chr3 91551511 91551586 -126485572 + (TTA)n Simple_repeat Simple_repeat 2 73 0 1855 164 20 0 chr3 91551688 91551992 -126485166 - AluSx SINE Alu -1 311 2 1658 123 56 95 chr3 91552078 91552468 -126484690 + THE1C LTR MaLR 1 375 0 284 214 0 0 chr3 91552728 91552784 -126484374 - MIR SINE MIR -161 101 46 22 70 0 0 chr3 91555172 91555215 -126481943 + AT_rich Low_complexity Low_complexity 1 43 0 1976 165 17 7 chr3 91556279 91556778 -126480380 + MER34B LTR ERV1 1 565 0 2432 120 3 0 chr3 91558685 91559042 -126478116 + THE1B LTR MaLR 1 358 -6 356 313 78 22 chr3 91559052 91559231 -126477927 - MER5A DNA MER1_type 0 189 1 21 36 0 0 chr3 91559508 91559536 -126477622 + AT_rich Low_complexity Low_complexity 1 28 0 281 316 13 0 chr3 91561193 91561272 -126475886 + L2 LINE L2 3234 3313 0 2182 117 0 3 chr3 91561431 91561729 -126475429 - AluSp SINE Alu -15 298 2 260 353 0 0 chr3 91561850 91561935 -126475223 - MIR SINE MIR -60 148 64 24 32 0 0 chr3 91562644 91562675 -126474483 + AT_rich Low_complexity Low_complexity 1 31 0 3725 34 0 0 chr3 91562951 91563395 -126473763 + L1PA4 LINE L1 5708 6151 -4 1867 187 16 11 chr3 91563557 91563920 -126473238 - MLT1A1 LTR MaLR 0 365 1 381 265 176 0 chr3 91564720 91564890 -126472268 + LTR33 LTR ERVL 275 474 -47 2279 15 0 0 chr3 91565000 91565271 -126471887 - L1PA4 LINE L1 -261 5894 5624 1921 43 4 0 chr3 91565271 91565528 -126471630 + L1PA4 LINE L1 5902 6159 0 326 321 7 43 chr3 91565875 91566015 -126471143 + MIR SINE MIR 72 206 -56 333 316 66 7 chr3 91567184 91567336 -126469822 - MIR SINE MIR -51 211 51 333 0 0 0 chr3 91567565 91567602 -126469556 + (TG)n Simple_repeat Simple_repeat 2 38 0 1483 74 15 0 chr3 91568031 91568234 -126468924 + L1PA6 LINE L1 5939 6144 -10 226 235 20 0 chr3 91568738 91568789 -126468369 - MIR SINE MIR -52 210 159 1746 228 141 32 chr3 91569288 91570033 -126467125 + LTR1B LTR ERV1 1 826 0 30 45 0 0 chr3 91570112 91570156 -126467002 + AT_rich Low_complexity Low_complexity 1 44 0 1100 240 43 7 chr3 91570475 91570779 -126466379 - MER39 LTR ERV1 0 707 393 25 0 0 0 chr3 91571424 91571449 -126465709 + AT_rich Low_complexity Low_complexity 1 25 0 2111 124 0 0 chr3 91571567 91571857 -126465301 + AluSq SINE Alu 1 290 -23 250 339 120 30 chr3 91572218 91572451 -126464707 + L2 LINE L2 235 488 -2826 232 309 0 0 chr3 91573095 91573189 -126463969 + L1ME4a LINE L1 5791 5884 -280 347 293 153 17 chr3 91573382 91573671 -126463487 + L2 LINE L2 2734 3074 -239 672 273 98 24 chr3 91573807 91574265 -126462893 - L2 LINE L2 -123 3190 2716 417 209 66 147 chr3 91574265 91574585 -126462573 + L2 LINE L2 3019 3312 -1 183 80 0 0 chr3 91574797 91574822 -126462336 + (GAAA)n Simple_repeat Simple_repeat 4 28 0 24 0 0 0 chr3 91575798 91575822 -126461336 + AT_rich Low_complexity Low_complexity 1 24 0 191 306 0 42 chr3 91576233 91576305 -126460853 - L2 LINE L2 -189 3083 3015 886 236 61 31 chr3 91576460 91576814 -126460344 - MSTD LTR MaLR 0 396 2 202 343 22 44 chr3 91576815 91576996 -126460162 - L2 LINE L2 -450 2864 2688 294 224 127 30 chr3 91577140 91577274 -126459884 - MER103 DNA DNA -10 156 10 260 273 15 0 chr3 91577636 91577702 -126459456 - LTR67 LTR ERVL -384 173 107 846 269 86 40 chr3 91578360 91578788 -126458370 - MLT1C LTR MaLR -7 460 13 1385 200 28 85 chr3 91578915 91578944 -126458214 - MLT2D LTR ERVL -11 403 374 396 0 0 0 chr3 91578944 91578988 -126458170 + (TG)n Simple_repeat Simple_repeat 2 45 0 1385 200 28 85 chr3 91578988 91579383 -126457775 - MLT2D LTR ERVL -40 374 3 1575 181 72 6 chr3 91580190 91580510 -126456648 - MER61A LTR ERV1 0 343 3 28 29 0 0 chr3 91580520 91580555 -126456603 + AT_rich Low_complexity Low_complexity 1 35 0 267 192 57 96 chr3 91580610 91580787 -126456371 + L1ME4a LINE L1 5923 6092 -29 201 74 0 0 chr3 91580807 91580834 -126456324 + (A)n Simple_repeat Simple_repeat 1 27 0 196 333 12 24 chr3 91582724 91582808 -126454350 - MIR SINE MIR -83 179 97 274 316 18 18 chr3 91583753 91583924 -126453234 + MER90 LTR ERV1 444 614 0 2255 147 67 2 chr3 91586732 91587134 -126450024 + MSTA LTR MaLR 1 428 0 291 194 0 60 chr3 91588300 91588367 -126448791 - MLT1J2 LTR MaLR 0 450 388 700 255 155 82 chr3 91588693 91588762 -126448396 + L2 LINE L2 2898 2961 -352 2562 43 0 3 chr3 91588762 91589066 -126448092 - AluY SINE Alu -8 303 1 700 255 155 82 chr3 91589066 91589384 -126447774 + L2 LINE L2 2961 3313 0 316 284 64 76 chr3 91589545 91589781 -126447377 - MLT1J2 LTR MaLR -217 233 1 1807 102 0 20 chr3 91589973 91590227 -126446931 + AluSx SINE Alu 46 294 -18 2254 107 29 6 chr3 91590235 91590582 -126446576 - MLT2A1 LTR ERVL -89 355 1 2436 65 3 0 chr3 91591055 91591363 -126445795 + AluY SINE Alu 2 310 -1 1168 175 97 33 chr3 91591626 91591947 -126445211 + MLT1A1 LTR MaLR 1 366 -24 1736 191 0 3 chr3 91593225 91593528 -126443630 + AluJb SINE Alu 1 302 -10 22 0 0 0 chr3 91594116 91594138 -126443020 + AT_rich Low_complexity Low_complexity 1 22 0 1057 193 29 0 chr3 91595583 91595790 -126441368 - MER20 DNA MER1_type 0 219 7 764 220 120 8 chr3 91595790 91596049 -126441109 + L1MD3 LINE L1 7708 7995 0 453 145 82 101 chr3 91596085 91596244 -126440914 - MER106B DNA MER1_type -2 1057 902 2367 103 19 32 chr3 91596415 91596784 -126440374 + THE1B LTR MaLR 1 364 0 192 356 0 0 chr3 91597935 91597994 -126439164 + L2 LINE L2 3201 3259 -13 2936 101 44 7 chr3 91598307 91598344 -126438814 - MLT2A1 LTR ERVL 0 444 410 574 93 0 21 chr3 91598344 91598441 -126438717 + (TA)n Simple_repeat Simple_repeat 2 96 0 2936 101 44 7 chr3 91598441 91598831 -126438327 - MLT2A1 LTR ERVL -34 410 1 20003 86 14 1 chr3 91598831 91601626 -126435532 - HERVL-A1-A1 LTR ERVL 0 5654 2824 16501 78 2 2 chr3 91601636 91603881 -126433277 - HERVL-A1-A1 LTR ERVL -3409 2245 1 3290 73 16 9 chr3 91603881 91604322 -126432836 - MLT2A1 LTR ERVL 0 444 1 1752 128 109 6 chr3 91604564 91604893 -126432265 + THE1C LTR MaLR 1 363 -12 1619 163 4 14 chr3 91605648 91605955 -126431203 - AluJo SINE Alu 0 314 11 339 313 207 0 chr3 91606154 91606304 -126430854 - MER5A DNA MER1_type 0 189 9 2039 106 7 26 chr3 91606446 91606749 -126430409 - AluSc SINE Alu -12 297 1 21 57 0 0 chr3 91606795 91606830 -126430328 + AT_rich Low_complexity Low_complexity 1 35 0 1952 188 69 10 chr3 91606920 91607324 -126429834 - MSTA LTR MaLR 0 428 1 22 0 0 0 chr3 91608595 91608617 -126428541 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr3 91609356 91609392 -126427766 + AT_rich Low_complexity Low_complexity 1 36 0 26 50 0 0 chr3 91609480 91609520 -126427638 + AT_rich Low_complexity Low_complexity 1 40 0 186 167 0 0 chr3 91609663 91609699 -126427459 + (TA)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr3 91609809 91609830 -126427328 + AT_rich Low_complexity Low_complexity 1 21 0 2014 124 17 3 chr3 91610428 91610719 -126426439 + AluSx SINE Alu 1 295 -17 25 0 0 0 chr3 91611091 91611116 -126426042 + AT_rich Low_complexity Low_complexity 1 25 0 223 266 25 13 chr3 91611208 91611287 -126425871 - MIR SINE MIR -95 167 88 629 170 0 0 chr3 91611623 91611735 -126425423 - MLT1D LTR MaLR -2 503 392 286 209 114 50 chr3 91611737 91611927 -126425231 + MLT1-int LTR MaLR 1245 1368 -3 239 216 0 0 chr3 91611927 91611976 -126425182 - MLT1D-int LTR MaLR -660 711 663 434 237 0 123 chr3 91612039 91612250 -126424908 - MLT1D-int LTR MaLR -720 651 467 894 228 12 78 chr3 91612254 91612320 -126424838 - MLT1D-int LTR MaLR -1046 325 256 2262 109 0 0 chr3 91612320 91612614 -126424544 - AluSc SINE Alu -15 294 1 894 228 12 78 chr3 91612614 91612880 -126424278 - MLT1D-int LTR MaLR -1115 256 15 1522 250 73 15 chr3 91612883 91613359 -126423799 - MLT1D LTR MaLR -1 504 1 2033 95 0 28 chr3 91613845 91614128 -126423030 + AluSg1 SINE Alu 35 309 0 200 384 60 32 chr3 91614527 91614811 -126422347 + L2 LINE L2 2565 2856 -458 1091 142 0 0 chr3 91615040 91615195 -126421963 + FRAM SINE Alu 1 154 -22 209 343 0 15 chr3 91615381 91615448 -126421710 + L2 LINE L2 3200 3265 -7 30 77 0 0 chr3 91617161 91617226 -126419932 + AT_rich Low_complexity Low_complexity 1 65 0 1912 133 7 39 chr3 91617247 91617556 -126419602 - AluSq SINE Alu -14 299 1 180 0 0 0 chr3 91618425 91618445 -126418713 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5166 109 13 7 chr3 91620234 91621059 -126416099 + L1PA11 LINE L1 5345 6174 0 362 240 62 0 chr3 91621562 91621658 -126415500 - L1MC4 LINE L1 -1317 6725 6624 22 80 0 0 chr3 91622043 91622093 -126415065 + AT_rich Low_complexity Low_complexity 1 50 0 456 206 20 0 chr3 91622210 91622312 -126414846 + MER103 DNA DNA 4 107 -59 208 135 0 0 chr3 91623170 91623207 -126413951 + (A)n Simple_repeat Simple_repeat 1 37 0 14339 112 10 16 chr3 91623716 91629956 -126407202 + L1PA7 LINE L1 2 6465 -4 318 312 43 43 chr3 91630360 91630591 -126406567 + L1M4 LINE L1 5100 5330 -816 807 275 102 3 chr3 91630633 91630928 -126406230 - MLT1D LTR MaLR -10 616 293 1878 59 0 0 chr3 91630947 91631200 -126405958 - L1HS LINE L1 0 6155 5903 500 276 88 24 chr3 91631739 91631989 -126405169 - MLT1K LTR MaLR -23 565 300 2099 162 67 2 chr3 91633308 91633710 -126403448 - MSTA LTR MaLR 0 428 1 7544 104 7 3 chr3 91633860 91635348 -126401810 + L1P3 LINE L1 4221 5711 -443 11536 48 1 0 chr3 91635457 91636969 -126400189 - L1P LINE L1 -873 5273 3760 1741 197 0 0 chr3 91637334 91637644 -126399514 - AluSx SINE Alu -2 310 1 198 71 0 0 chr3 91637645 91637673 -126399485 + (T)n Simple_repeat Simple_repeat 1 28 0 273 98 0 0 chr3 91637826 91637867 -126399291 + (TG)n Simple_repeat Simple_repeat 2 42 0 32576 29 15 1 chr3 91638831 91644793 -126392365 - L1HS LINE L1 -23 6132 16 867 211 73 69 chr3 91644793 91645082 -126392076 - MLT1D LTR MaLR -215 290 1 194 0 0 37 chr3 91645641 91645668 -126391490 + (TCTA)n Simple_repeat Simple_repeat 4 29 0 824 183 78 21 chr3 91645781 91645972 -126391186 + MER58A DNA MER1_type 1 202 -22 1471 207 30 66 chr3 91646563 91646842 -126390316 + MLT2D LTR ERVL 1 288 -232 1728 185 46 8 chr3 91646842 91647193 -126389965 + MLT1A1 LTR MaLR 1 364 -1 1471 207 30 66 chr3 91647193 91647254 -126389904 + MLT2D LTR ERVL 288 350 -170 2075 133 39 30 chr3 91647254 91647615 -126389543 - THE1B LTR MaLR 0 364 1 1471 207 30 66 chr3 91647615 91647671 -126389487 + MLT2D LTR ERVL 350 480 -40 218 283 0 0 chr3 91647671 91647724 -126389434 + (CATATA)n Simple_repeat Simple_repeat 4 56 0 352 57 0 75 chr3 91647724 91647777 -126389381 + MLT2D LTR ERVL 366 414 0 497 273 0 25 chr3 91647918 91648039 -126389119 + MLT1F LTR MaLR 5 122 -420 359 341 23 17 chr3 91648109 91648285 -126388873 + MLT1F1-int LTR MaLR 696 872 -499 277 265 154 0 chr3 91648702 91648819 -126388339 + MLT1F1-int LTR MaLR 1580 1714 -21 566 294 17 11 chr3 91648841 91649018 -126388140 + MLT1F1 LTR MaLR 1 178 -364 872 289 70 32 chr3 91649050 91649420 -126387738 + MLT1F1 LTR MaLR 169 552 -15 512 311 17 11 chr3 91649911 91650088 -126387070 + MLT1F1 LTR MaLR 1 178 -364 1158 273 65 29 chr3 91650120 91650505 -126386653 + MLT1F1 LTR MaLR 169 567 0 255 298 61 70 chr3 91650931 91651045 -126386113 - LTR33A LTR ERVL -344 179 67 4519 56 3 30 chr3 91652040 91652647 -126384511 - LTR10C LTR ERV1 0 591 1 1809 178 29 18 chr3 91654242 91654584 -126382574 - MSTA LTR MaLR -82 346 1 655 245 0 0 chr3 91654665 91654804 -126382354 + MLT1A1 LTR MaLR 1 139 -226 1943 171 12 12 chr3 91655264 91655631 -126381527 + MLT2A2 LTR ERVL 1 297 -156 762 143 8 0 chr3 91655884 91656010 -126381148 - AluJb SINE Alu -9 303 177 1048 79 13 0 chr3 91656072 91656224 -126380934 - AluY SINE Alu -2 309 156 1646 127 42 35 chr3 91656326 91656609 -126380549 - THE1B LTR MaLR -78 286 2 201 211 0 0 chr3 91656658 91656710 -126380448 + (TA)n Simple_repeat Simple_repeat 2 53 0 303 158 0 0 chr3 91656718 91656772 -126380386 + MLT2C2 LTR ERVL 400 464 0 406 229 49 82 chr3 91656913 91657035 -126380123 + MLT1F LTR MaLR 5 122 -420 294 318 22 34 chr3 91657105 91657284 -126379874 + MLT1F1-int LTR MaLR 696 872 -499 274 221 15 0 chr3 91657751 91657819 -126379339 + MLT1F1-int LTR MaLR 1646 1714 -21 575 294 17 11 chr3 91657841 91658018 -126379140 + MLT1F1 LTR MaLR 1 178 -364 1158 273 65 29 chr3 91658050 91658435 -126378723 + MLT1F1 LTR MaLR 169 567 0 255 298 61 70 chr3 91658861 91658975 -126378183 - LTR33A LTR ERVL -344 179 67 4086 88 0 26 chr3 91659974 91660577 -126376581 - LTR10C LTR ERV1 -4 587 1 259 226 71 36 chr3 91663146 91663230 -126373928 + MLT1H LTR MaLR 463 549 0 789 269 46 9 chr3 91663651 91663867 -126373291 + MER58A DNA MER1_type 1 224 0 396 0 0 0 chr3 91664251 91664295 -126372863 + (TG)n Simple_repeat Simple_repeat 2 45 0 878 203 18 5 chr3 91667085 91667302 -126369856 - L1MC3 LINE L1 0 7785 7566 535 295 39 24 chr3 91667428 91667635 -126369523 + MIR SINE MIR 53 262 0 365 108 231 0 chr3 91669044 91669109 -126368049 - MADE1 DNA Mariner 0 80 1 22 88 0 0 chr3 91670860 91670917 -126366241 + AT_rich Low_complexity Low_complexity 1 57 0 2192 139 0 0 chr3 91671228 91671556 -126365602 - AluSx SINE Alu 0 328 1 273 98 0 0 chr3 91671738 91671779 -126365379 + (TG)n Simple_repeat Simple_repeat 2 42 0 22 80 0 0 chr3 91673004 91673054 -126364104 + AT_rich Low_complexity Low_complexity 1 50 0 818 17 26 17 chr3 91673656 91673773 -126363385 + (TCTA)n Simple_repeat Simple_repeat 1 118 0 262 123 35 0 chr3 91673981 91674038 -126363120 + (TA)n Simple_repeat Simple_repeat 1 59 0 1188 257 242 21 chr3 91674390 91675166 -126361992 + L1MC4 LINE L1 6635 7667 -375 796 99 58 6 chr3 91675287 91675458 -126361700 + CT-rich Low_complexity Low_complexity 1 180 0 1572 209 23 3 chr3 91675478 91675784 -126361374 - AluJb SINE Alu 0 312 1 419 324 116 18 chr3 91676105 91676389 -126360769 - L2 LINE L2 -1 3312 3001 192 195 11 35 chr3 91676699 91676786 -126360372 + GA-rich Low_complexity Low_complexity 1 85 0 930 223 55 38 chr3 91676834 91677126 -126360032 - MER58B DNA MER1_type 0 341 45 190 424 0 0 chr3 91677226 91677318 -126359840 + MIR3 SINE MIR 87 178 -30 833 247 119 69 chr3 91677943 91678473 -126358685 + MLT1H1 LTR MaLR 7 555 0 22 56 0 0 chr3 91678699 91678735 -126358423 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr3 91678838 91678861 -126358297 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 91679877 91679900 -126357258 + AT_rich Low_complexity Low_complexity 1 23 0 2051 139 3 0 chr3 91680840 91681134 -126356024 - AluSq SINE Alu -18 295 1 2333 139 22 7 chr3 91681583 91681986 -126355172 + L1PA13 LINE L1 5754 6162 -1 392 234 56 0 chr3 91682024 91682131 -126355027 - MER103 DNA DNA -44 122 10 25 65 0 0 chr3 91684395 91684441 -126352717 + AT_rich Low_complexity Low_complexity 1 46 0 34 24 0 0 chr3 91687904 91687945 -126349213 + AT_rich Low_complexity Low_complexity 1 41 0 503 285 53 8 chr3 91688230 91688493 -126348665 - L1ME3A LINE L1 -221 5949 5675 343 325 53 21 chr3 91689396 91689584 -126347574 + L1ME3A LINE L1 1925 2118 -4278 787 267 71 41 chr3 91689596 91689989 -126347169 + L1ME3A LINE L1 4065 4469 -1746 1099 169 0 6 chr3 91690035 91690218 -126346940 + AluJb SINE Alu 122 303 -9 2136 89 39 0 chr3 91690220 91690502 -126346656 + AluSx SINE Alu 1 293 -19 306 0 0 0 chr3 91690507 91690541 -126346617 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 1075 264 78 38 chr3 91690599 91691024 -126346134 + L1ME3A LINE L1 5694 6135 -104 488 311 144 0 chr3 91691066 91691233 -126345925 + MLT1H LTR MaLR 31 221 -328 809 135 0 21 chr3 91691247 91691388 -126345770 - L1MA2 LINE L1 0 6304 6167 661 137 29 0 chr3 91691391 91691493 -126345665 - U6 snRNA snRNA -2 105 1 769 186 113 123 chr3 91691609 91692006 -126345152 - MSTD LTR MaLR 0 396 4 377 304 82 67 chr3 91692114 91692456 -126344702 - MLT1H LTR MaLR -182 367 21 606 224 76 88 chr3 91693460 91693922 -126343236 + MLT1G LTR MaLR 8 590 0 180 135 0 0 chr3 91694287 91694324 -126342834 + (TG)n Simple_repeat Simple_repeat 2 38 0 351 113 0 0 chr3 91694419 91694472 -126342686 + (CA)n Simple_repeat Simple_repeat 2 54 0 180 0 0 0 chr3 91695097 91695117 -126342041 + (CAA)n Simple_repeat Simple_repeat 2 21 0 586 309 112 13 chr3 91695880 91696113 -126341045 - MIR SINE MIR -5 257 2 27 0 0 0 chr3 91697362 91697389 -126339769 + AT_rich Low_complexity Low_complexity 1 27 0 22 80 0 0 chr3 91697480 91697530 -126339628 + AT_rich Low_complexity Low_complexity 1 50 0 321 290 0 20 chr3 91698699 91698981 -126338177 + G-rich Low_complexity Low_complexity 1 276 0 1965 163 67 25 chr3 91700059 91700561 -126336597 + MLT2A2 LTR ERVL 1 554 0 6013 190 38 21 chr3 91701113 91703559 -126333599 - L1PA16 LINE L1 -9 6860 4373 4004 240 18 20 chr3 91703571 91705086 -126332072 - L1PA16 LINE L1 -3457 3392 1879 428 192 154 10 chr3 91706667 91706771 -126330387 + L2 LINE L2 3192 3310 -3 333 339 129 6 chr3 91706988 91707159 -126329999 - MIR SINE MIR -20 242 51 5297 120 26 6 chr3 91707449 91708334 -126328824 - HERVL LTR ERVL -7 5647 4745 289 302 147 9 chr3 91808801 91808917 -126228241 + MIR SINE MIR 50 181 -81 2153 87 0 17 chr3 91808971 91809271 -126227887 + AluY SINE Alu 13 307 -4 234 365 53 22 chr3 91809519 91809699 -126227459 - MER5A DNA MER1_type 0 178 1 252 250 80 45 chr3 91810082 91810194 -126226964 - MIR SINE MIR -71 191 76 31807 114 6 19 chr3 91814470 91819415 -126217743 + L1P LINE L1 11 4888 -1258 1859 88 70 0 chr3 91819515 91819787 -126217371 - LTR30 LTR ERV1 -431 291 1 3305 99 2 11 chr3 91819787 91820252 -126216906 - HERV30 LTR ERV1 0 8257 7797 * 25806 113 9 7 chr3 91820248 91823861 -126213297 - HERV30 LTR ERV1 -4636 3621 1 4451 116 27 11 chr3 91823862 91824572 -126212586 - LTR30 LTR ERV1 -1 721 1 6597 132 22 13 chr3 91824582 91826057 -126211101 + L1MA1 LINE L1 4804 6292 -10 547 299 123 34 chr3 91826092 91826200 -126210958 - L1MEd LINE L1 -4926 1279 1182 2480 65 0 3 chr3 91826200 91826509 -126210649 - AluY SINE Alu -3 308 1 547 299 123 34 chr3 91826509 91826809 -126210349 - L1MEd LINE L1 -5023 1182 853 336 48 0 0 chr3 91826961 91827003 -126210155 + (TTTC)n Simple_repeat Simple_repeat 3 44 0 630 124 0 0 chr3 91827004 91827101 -126210057 - AluS SINE Alu -216 97 1 263 278 56 21 chr3 91827531 91827675 -126209483 + LTR67 LTR ERVL 397 545 -12 213 65 0 0 chr3 91828050 91828081 -126209077 + (T)n Simple_repeat Simple_repeat 1 31 0 23 97 0 0 chr3 91828523 91828595 -126208563 + AT_rich Low_complexity Low_complexity 1 72 0 363 208 14 0 chr3 91828626 91828698 -126208460 - MLT1A1 LTR MaLR -12 353 281 21 0 0 0 chr3 91830040 91830061 -126207097 + AT_rich Low_complexity Low_complexity 1 21 0 6800 64 8 13 chr3 91830849 91832200 -126204958 - L1PA6 LINE L1 -2 6152 4798 27 0 0 0 chr3 91832314 91832341 -126204817 + AT_rich Low_complexity Low_complexity 1 27 0 66 29 0 0 chr3 91832361 91832431 -126204727 + AT_rich Low_complexity Low_complexity 1 70 0 319 263 7 25 chr3 91832431 91832583 -126204575 + L1MC4 LINE L1 6608 6702 -1340 303 176 29 15 chr3 91832594 91832662 -126204496 - L1MCa LINE L1 -4363 2063 1995 183 114 0 0 chr3 91832662 91832697 -126204461 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1044 278 41 52 chr3 91832699 91833066 -126204092 + L2 LINE L2 2162 2524 -790 729 156 8 0 chr3 91833071 91833188 -126203970 + AluSq/x SINE Alu 1 119 -190 192 97 0 0 chr3 91833188 91833219 -126203939 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 608 286 91 73 chr3 91833237 91833790 -126203368 + L2 LINE L2 2720 3313 0 779 148 7 30 chr3 91834379 91834514 -126202644 + FLAM_A SINE Alu 1 132 -1 21 0 0 0 chr3 91834606 91834627 -126202531 + AT_rich Low_complexity Low_complexity 1 21 0 289 313 96 0 chr3 91834716 91834831 -126202327 - L2 LINE L2 -1 3312 3187 25 31 0 0 chr3 91835020 91835052 -126202106 + AT_rich Low_complexity Low_complexity 1 32 0 231 218 0 0 chr3 91835761 91835816 -126201342 + (CATA)n Simple_repeat Simple_repeat 2 56 0 29 0 0 0 chr3 91838331 91838360 -126198798 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 91838582 91838603 -126198555 + AT_rich Low_complexity Low_complexity 1 21 0 219 309 12 24 chr3 91838907 91838991 -126198167 - MIR3 SINE MIR -9 199 117 28 61 0 0 chr3 91839378 91839427 -126197731 + AT_rich Low_complexity Low_complexity 1 49 0 1937 206 21 45 chr3 91839529 91839870 -126197288 - L1 LINE L1 -1152 4994 4665 2134 88 48 7 chr3 91839870 91840164 -126196994 + AluSc SINE Alu 1 306 -3 1937 206 21 45 chr3 91840164 91840287 -126196871 - L1 LINE L1 -1481 4665 4541 11354 171 33 30 chr3 91840311 91842835 -126194323 - L1MA3 LINE L1 0 7724 5186 1975 144 41 22 chr3 91842835 91843202 -126193956 - THE1C LTR MaLR 0 375 2 11354 171 33 30 chr3 91843202 91844291 -126192867 - L1MA3 LINE L1 -2538 5186 4102 13660 137 32 13 chr3 91844291 91847027 -126190131 - L1MA3 LINE L1 -3675 3890 1104 544 160 47 9 chr3 91847029 91847135 -126190023 - L1MA3 LINE L1 -7437 128 19 1717 145 53 12 chr3 91847149 91847487 -126189671 - L1 LINE L1 -1594 4552 4201 * 4688 189 49 20 chr3 91847486 91848139 -126189019 + L1MA9 LINE L1 5017 5649 -663 189 0 0 0 chr3 91848139 91848160 -126188998 + (TG)n Simple_repeat Simple_repeat 2 22 0 4688 189 49 20 chr3 91848160 91848686 -126188472 + L1MA9 LINE L1 5649 6312 0 21 36 0 0 chr3 91848771 91848799 -126188359 + AT_rich Low_complexity Low_complexity 1 28 0 27 62 0 0 chr3 91850480 91850528 -126186630 + AT_rich Low_complexity Low_complexity 1 48 0 29 28 0 0 chr3 91850687 91850723 -126186435 + AT_rich Low_complexity Low_complexity 1 36 0 294 107 60 12 chr3 91850739 91850823 -126186335 + (TA)n Simple_repeat Simple_repeat 1 88 0 833 148 0 45 chr3 91850823 91850978 -126186180 - L1MA1 LINE L1 -16 6286 6139 21 36 0 0 chr3 91851302 91851330 -126185828 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr3 91851434 91851476 -126185682 + AT_rich Low_complexity Low_complexity 1 42 0 628 314 95 44 chr3 91851512 91851986 -126185172 - LTR67 LTR ERVL -58 499 2 576 265 64 110 chr3 91852840 91853342 -126183816 - L2 LINE L2 0 3313 2835 26 0 0 0 chr3 91854147 91854173 -126182985 + AT_rich Low_complexity Low_complexity 1 26 0 28 48 0 0 chr3 91854317 91854359 -126182799 + AT_rich Low_complexity Low_complexity 1 42 0 2333 73 0 3 chr3 91855564 91855867 -126181291 - AluY SINE Alu -9 302 1 23 33 0 0 chr3 91856298 91856328 -126180830 + AT_rich Low_complexity Low_complexity 1 30 0 1615 254 36 31 chr3 91856328 91856804 -126180354 - MLT1D LTR MaLR -8 497 20 577 63 0 13 chr3 91859356 91859481 -126177677 - AluSg/x SINE Alu 0 328 205 183 42 0 0 chr3 91859804 91859828 -126177330 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2374 69 0 3 chr3 91859877 91860183 -126176975 - AluSc SINE Alu -4 305 1 21 0 0 0 chr3 91860475 91860496 -126176662 + AT_rich Low_complexity Low_complexity 1 21 0 1652 191 33 21 chr3 91860605 91860941 -126176217 + MER58B DNA MER1_type 1 340 -1 1770 160 0 20 chr3 91861435 91861729 -126175429 + AluJb SINE Alu 1 288 -24 1942 114 0 0 chr3 91861738 91862001 -126175157 + AluY SINE Alu 34 296 -15 207 0 0 0 chr3 91862002 91862025 -126175133 + (CA)n Simple_repeat Simple_repeat 2 24 0 307 320 105 0 chr3 91862033 91862186 -126174972 - MIR SINE MIR -58 204 36 1832 228 3 23 chr3 91862204 91862595 -126174563 + MLT1B LTR MaLR 3 385 -5 385 377 114 27 chr3 91862736 91863139 -126174019 - L2 LINE L2 -25 3247 2810 1696 149 13 48 chr3 91863416 91863725 -126173433 + AluSx SINE Alu 1 298 -14 1031 304 159 64 chr3 91863740 91865198 -126171960 - L2 LINE L2 -934 2380 751 1737 160 16 19 chr3 91865198 91865511 -126171647 + AluJo SINE Alu 1 312 0 1031 304 159 64 chr3 91865511 91865676 -126171482 - L2 LINE L2 -2563 751 603 290 324 65 60 chr3 91866798 91866983 -126170175 + MIR3 SINE MIR 20 205 -3 35 63 0 0 chr3 91867323 91867386 -126169772 + AT_rich Low_complexity Low_complexity 1 63 0 346 368 26 7 chr3 91870016 91870171 -126166987 + L3 LINE CR1 231 388 -1189 21 36 0 0 chr3 91871085 91871113 -126166045 + AT_rich Low_complexity Low_complexity 1 28 0 345 315 29 3 chr3 91871229 91871365 -126165793 + MER20 DNA MER1_type 64 202 -17 1485 212 52 26 chr3 91871843 91872229 -126164929 + MSTD LTR MaLR 1 396 0 5864 270 65 13 chr3 91872245 91873881 -126163277 + MSTD-int LTR MaLR 14 1735 0 1209 185 22 18 chr3 91873881 91874103 -126163055 + MSTD LTR MaLR 1 223 -173 397 145 0 0 chr3 91874172 91874234 -126162924 + MSTD LTR MaLR 396 457 0 26 0 0 0 chr3 91876224 91876250 -126160908 + AT_rich Low_complexity Low_complexity 1 26 0 245 0 0 0 chr3 91876916 91876949 -126160209 + L1MA3 LINE L1 6273 6305 0 5455 222 104 19 chr3 91879109 91880569 -126156589 - MER52A LTR ERV1 0 1755 1 25 31 0 0 chr3 91881257 91881289 -126155869 + AT_rich Low_complexity Low_complexity 1 32 0 259 343 59 10 chr3 91881610 91881913 -126155245 + L1ME4a LINE L1 5565 5882 -239 227 244 115 0 chr3 91881964 91882042 -126155116 + L1ME4a LINE L1 5979 6065 -56 519 17 0 0 chr3 91882501 91882561 -126154597 + (TA)n Simple_repeat Simple_repeat 1 60 0 21 0 0 0 chr3 91882745 91882766 -126154392 + AT_rich Low_complexity Low_complexity 1 21 0 705 309 81 44 chr3 91883707 91884235 -126152923 + LTR67 LTR ERVL 2 549 -8 27 62 0 0 chr3 91884967 91885015 -126152143 + AT_rich Low_complexity Low_complexity 1 48 0 303 28 0 0 chr3 91885019 91885055 -126152103 + (CA)n Simple_repeat Simple_repeat 2 37 0 518 298 49 36 chr3 91886723 91887115 -126150043 + MER101 LTR ERV1 75 419 -55 700 254 52 6 chr3 91887331 91887504 -126149654 - L1PB4 LINE L1 -8 6148 5968 2296 113 30 32 chr3 91889017 91889390 -126147768 + THE1C LTR MaLR 2 373 -2 344 191 15 15 chr3 91889624 91889692 -126147466 - HERVL74 LTR ERVL -3304 2381 2314 1314 223 148 3 chr3 91889698 91890075 -126147083 - L1P4 LINE L1 -2057 4089 3658 * 5157 203 21 12 chr3 91890066 91891614 -126145544 + L1P4 LINE L1 4110 5671 -495 1698 233 26 5 chr3 91891625 91892046 -126145112 + L1PBa LINE L1 -656 4294967069 -6431 2364 333 81 46 chr3 91892057 91892721 -126144437 + L1PBa LINE L1 -60 650 -5554 1532 118 7 54 chr3 91892721 91893000 -126144158 + AluY SINE Alu 46 311 0 2364 333 81 46 chr3 91893000 91893299 -126143859 + L1PBa LINE L1 650 937 -5267 4157 121 107 122 chr3 91893302 91894726 -126142432 - pTR5 LTR ERV1 0 2438 747 13748 183 36 13 chr3 91894726 91900053 -126137105 + L1PB2 LINE L1 1 5478 -730 2251 108 0 3 chr3 91900053 91900350 -126136808 + AluSc SINE Alu 1 296 -13 13748 183 36 13 chr3 91900350 91901096 -126136062 + L1PB2 LINE L1 5478 6206 -2 3026 156 2 0 chr3 91901112 91901605 -126135553 + L1PA16 LINE L1 5653 6146 -20 23 33 0 0 chr3 91901726 91901756 -126135402 + AT_rich Low_complexity Low_complexity 1 30 0 491 357 37 8 chr3 91901760 91902004 -126135154 - HERVL74 LTR ERVL -3547 2138 1888 2002 157 41 11 chr3 91903213 91903576 -126133582 - THE1C LTR MaLR 0 375 2 5648 133 6 5 chr3 91903577 91904424 -126132734 - THE1C-int LTR MaLR 0 1580 733 270 217 94 19 chr3 91904444 91904550 -126132608 + MER31-int LTR ERV1 3444 3557 -1379 339 62 0 0 chr3 91904904 91904952 -126132206 + MADE1 DNA Mariner 1 48 -32 386 363 139 12 chr3 91904962 91905237 -126131921 - L2 LINE L2 -247 3066 2761 210 143 0 0 chr3 91905410 91905445 -126131713 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 233 367 122 0 chr3 91905546 91905693 -126131465 - L2 LINE L2 -683 2631 2467 308 303 37 0 chr3 91907094 91907203 -126129955 + MIR SINE MIR 80 192 -70 1104 246 102 108 chr3 91908484 91909065 -126128093 + MER21B LTR ERV1 133 709 -154 346 341 40 51 chr3 91909279 91909455 -126127703 + MIR3 SINE MIR 3 176 -32 195 326 0 0 chr3 91909641 91909690 -126127468 - L2 LINE L2 -90 3223 3175 835 238 105 11 chr3 91910136 91910422 -126126736 + Charlie4a DNA MER1_type 5 317 -191 4388 21 0 0 chr3 91910422 91910933 -126126225 + L1PA3 LINE L1 5644 6154 -1 223 397 35 9 chr3 91911309 91911425 -126125733 + MIR SINE MIR 23 141 -121 221 296 0 57 chr3 91911533 91911621 -126125537 + MIR3 SINE MIR 111 193 -15 22 0 0 0 chr3 91911626 91911648 -126125510 + AT_rich Low_complexity Low_complexity 1 22 0 24 77 0 0 chr3 91913058 91913110 -126124048 + AT_rich Low_complexity Low_complexity 1 52 0 459 0 0 0 chr3 91913298 91913349 -126123809 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 217 234 31 109 chr3 91914041 91914169 -126122989 + L2 LINE L2 3124 3241 -72 2334 71 7 3 chr3 91915650 91915944 -126121214 - AluSg SINE Alu -15 295 1 2088 138 3 0 chr3 91917495 91917791 -126119367 - AluSx SINE Alu -15 297 1 4479 183 124 62 chr3 91918585 91921458 -126115700 + pTR5 LTR ERV1 168 2438 0 2350 71 0 3 chr3 91921850 91922146 -126115012 - AluY SINE Alu -16 295 1 30 27 0 0 chr3 91923046 91923083 -126114075 + AT_rich Low_complexity Low_complexity 1 37 0 2274 190 11 26 chr3 91923323 91923791 -126113367 + LOR1b LTR ERV1 1 461 0 531 349 98 37 chr3 91925075 91925616 -126111542 + L2 LINE L2 2135 2708 -606 237 255 0 0 chr3 91926014 91926061 -126111097 - MIR SINE MIR -147 115 69 2503 213 68 65 chr3 91926231 91926436 -126110722 - L1MC3 LINE L1 0 7785 7582 2101 126 3 3 chr3 91926436 91926746 -126110412 - AluSg SINE Alu 0 310 1 2503 213 68 65 chr3 91926746 91927168 -126109990 - L1MC3 LINE L1 -203 7582 7152 2410 78 3 0 chr3 91927168 91927474 -126109684 + AluY SINE Alu 1 307 -4 2503 213 68 65 chr3 91927474 91927742 -126109416 - L1MC3 LINE L1 -633 7152 6886 4451 235 14 11 chr3 91928073 91929172 -126107986 + L1P LINE L1 1627 2728 -3418 537 259 37 62 chr3 91929323 91929435 -126107723 - MER5A DNA MER1_type -31 158 50 1898 176 21 21 chr3 91929435 91929822 -126107336 - MLT1B LTR MaLR -3 387 1 537 259 37 62 chr3 91929822 91929871 -126107287 - MER5A DNA MER1_type -139 50 1 2566 53 0 0 chr3 91930731 91931033 -126106125 + AluY SINE Alu 1 302 -9 1380 201 98 60 chr3 91931473 91931842 -126105316 - MLT1B LTR MaLR -7 383 1 21 0 0 0 chr3 91932972 91932993 -126104165 + AT_rich Low_complexity Low_complexity 1 21 0 1991 131 109 3 chr3 91933697 91934026 -126103132 - THE1B LTR MaLR 0 364 1 354 280 121 68 chr3 91934225 91934489 -126102669 - MER102b DNA MER1_type -39 302 25 250 262 16 0 chr3 91934831 91934892 -126102266 + (CATATA)n Simple_repeat Simple_repeat 1 62 0 1918 133 31 76 chr3 91935276 91935313 -126101845 + MER47A DNA MER2_type 2 39 -2284 2298 94 3 0 chr3 91935313 91935610 -126101548 - AluSg1 SINE Alu -11 298 1 1918 133 31 76 chr3 91935610 91935648 -126101510 + MER47A DNA MER2_type 39 77 -2246 2008 156 36 25 chr3 91935648 91936008 -126101150 - THE1B LTR MaLR 0 364 1 1918 133 31 76 chr3 91936008 91936313 -126100845 + MER47A DNA MER2_type 77 366 0 23 33 0 0 chr3 91936362 91936392 -126100766 + AT_rich Low_complexity Low_complexity 1 30 0 2329 144 25 14 chr3 91936733 91937169 -126099989 + LTR30 LTR ERV1 282 722 0 11230 190 14 34 chr3 91937169 91939893 -126097265 - L1 LINE L1 -1428 6137 3475 * 12725 151 30 9 chr3 91939880 91942046 -126095112 - L1 LINE L1 -4548 3017 808 311 278 56 91 chr3 91942114 91942162 -126094996 + L1MDa LINE L1 1858 1906 -4634 1795 138 42 3 chr3 91942162 91942329 -126094829 - AluSg SINE Alu -10 300 116 315 0 0 0 chr3 91942329 91942364 -126094794 + (TG)n Simple_repeat Simple_repeat 2 36 0 1795 138 42 3 chr3 91942364 91942485 -126094673 - AluSg SINE Alu -194 116 1 311 278 56 91 chr3 91942485 91942688 -126094470 + L1MDa LINE L1 1906 2100 -4440 1127 245 54 30 chr3 91942757 91943209 -126093949 - L1MC/D LINE L1 -743 5403 5122 2398 90 0 3 chr3 91943209 91943520 -126093638 - AluY SINE Alu -1 310 1 1127 245 54 30 chr3 91943520 91943702 -126093456 - L1MC/D LINE L1 -1024 5122 4946 2342 245 50 41 chr3 91943707 91943750 -126093408 + L1MD2 LINE L1 5611 5652 -707 1149 254 96 15 chr3 91943750 91944093 -126093065 - MLT1A2 LTR MaLR 0 374 4 2342 245 50 41 chr3 91944093 91944775 -126092383 + L1MD2 LINE L1 5652 6342 -17 664 335 96 20 chr3 91944793 91945282 -126091876 + L1MDa LINE L1 3424 3949 -2591 895 315 86 52 chr3 91945309 91945899 -126091259 + L1PA16 LINE L1 788 1397 -6177 486 224 0 0 chr3 91946021 91946119 -126091039 + L1PA16 LINE L1 2084 2181 -5400 12522 231 31 37 chr3 91946356 91946903 -126090255 + L1PA16 LINE L1 2185 2733 -4871 1576 204 0 10 chr3 91946903 91947202 -126089956 + AluJo SINE Alu 13 308 -4 12522 231 31 37 chr3 91947202 91951179 -126085979 + L1PA16 LINE L1 2733 6761 -843 2146 117 3 0 chr3 91951179 91951478 -126085680 + AluSg SINE Alu 9 308 -2 12522 231 31 37 chr3 91951478 91952317 -126084841 + L1PA16 LINE L1 6761 7603 -1 1539 164 0 14 chr3 91952314 91952589 -126084569 + L1MA3 LINE L1 5769 6039 -266 * 1672 113 4 0 chr3 91952616 91952864 -126084294 - MSTA-int LTR MaLR -1402 249 1 1755 164 130 16 chr3 91952864 91953248 -126083910 - MSTA LTR MaLR 0 428 1 1383 148 35 0 chr3 91953248 91953505 -126083653 + L1MA3 LINE L1 6034 6299 -6 390 255 35 7 chr3 91953557 91953702 -126083456 + L1M4 LINE L1 3623 3771 -2375 416 323 47 35 chr3 91953738 91953992 -126083166 + L1ME3A LINE L1 5827 6083 -87 1072 147 161 14 chr3 91956298 91956509 -126080649 - LOR1a LTR ERV1 -2 495 254 956 186 11 6 chr3 91957005 91957182 -126079976 + MER5A DNA MER1_type 11 188 -1 205 370 43 0 chr3 91958237 91958329 -126078829 - MIR SINE MIR -75 133 38 22 88 0 0 chr3 91958351 91958408 -126078750 + AT_rich Low_complexity Low_complexity 1 57 0 775 316 86 27 chr3 91958712 91959120 -126078038 - L2 LINE L2 -2 3311 2880 1280 288 33 34 chr3 91959129 91959799 -126077359 + L1M4c LINE L1 1031 1699 -4685 25 0 0 0 chr3 91960179 91960204 -126076954 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr3 91960568 91960597 -126076561 + AT_rich Low_complexity Low_complexity 1 29 0 214 281 0 0 chr3 91960837 91960894 -126076264 + MIR SINE MIR 88 144 -118 2328 143 73 0 chr3 91961532 91961931 -126075227 - MSTA LTR MaLR 0 428 1 289 277 18 0 chr3 91962329 91962441 -126074717 + (TA)n Simple_repeat Simple_repeat 2 115 0 238 224 0 0 chr3 91963809 91963858 -126073300 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 21 107 0 0 chr3 91964374 91964458 -126072700 + AT_rich Low_complexity Low_complexity 1 84 0 2187 107 25 0 chr3 91964770 91965097 -126072061 - L1PA11 LINE L1 0 6174 5840 186 384 0 0 chr3 91967323 91967396 -126069762 - L2 LINE L2 -646 2668 2596 275 339 50 0 chr3 91967665 91967786 -126069372 - L2 LINE L2 0 3313 3187 253 247 14 0 chr3 91968247 91968320 -126068838 + (TA)n Simple_repeat Simple_repeat 2 75 0 21 57 0 0 chr3 91969201 91969236 -126067922 + AT_rich Low_complexity Low_complexity 1 35 0 321 68 0 0 chr3 92020160 92020204 -126016954 + (GA)n Simple_repeat Simple_repeat 1 44 0 335 162 0 29 chr3 92022293 92022361 -126014797 + Alu SINE Alu 236 301 -1 4327 72 12 0 chr3 92022428 92023011 -126014147 - L1P LINE L1 -1707 4439 3850 1096 173 0 0 chr3 92023111 92023296 -126013862 - L1P LINE L1 -1521 4625 4441 1911 80 0 4 chr3 92023371 92023621 -126013537 - AluY SINE Alu -14 297 49 2420 38 34 0 chr3 92025041 92025333 -126011825 - AluY SINE Alu -9 302 1 190 232 297 19 chr3 92025546 92025701 -126011457 - L2 LINE L2 -1 3312 3115 253 255 0 0 chr3 92026116 92026167 -126010991 + MER20 DNA MER1_type 1 51 -168 330 132 0 0 chr3 92026360 92026413 -126010745 + (A)n Simple_repeat Simple_repeat 1 53 0 24 0 0 0 chr3 92026754 92026778 -126010380 + AT_rich Low_complexity Low_complexity 1 24 0 39 0 0 0 chr3 92026994 92027033 -126010125 + AT_rich Low_complexity Low_complexity 1 39 0 236 297 29 6 chr3 92027998 92028173 -126008985 + (TA)n Simple_repeat Simple_repeat 1 179 0 23 0 0 0 chr3 92028838 92028861 -126008297 + AT_rich Low_complexity Low_complexity 1 23 0 235 206 98 43 chr3 92029682 92029774 -126007384 + MARNA DNA Mariner 8 104 -482 * 277 241 84 0 chr3 92029694 92029777 -126007381 - MARNA DNA Mariner -19 567 478 23 68 0 0 chr3 92030137 92030181 -126006977 + AT_rich Low_complexity Low_complexity 1 44 0 658 246 84 99 chr3 92030182 92030715 -126006443 - L1MC5 LINE L1 -416 7545 7021 231 149 0 0 chr3 92030984 92031031 -126006127 - LTR66 LTR ERVL -170 440 394 295 278 22 0 chr3 92031031 92031121 -126006037 + (TA)n Simple_repeat Simple_repeat 2 93 0 13973 102 6 18 chr3 92031929 92033211 -126003947 - L1P LINE L1 -2327 3819 2570 2087 128 0 3 chr3 92033211 92033509 -126003649 - AluSc SINE Alu -12 297 1 13973 102 6 18 chr3 92033509 92034358 -126002800 - L1P LINE L1 -3576 2570 1713 2530 113 24 8 chr3 92034867 92035249 -126001909 - L1PA11 LINE L1 0 6174 5787 2186 224 12 78 chr3 92036474 92037248 -125999910 - L1 LINE L1 -2437 3709 2987 1543 142 8 0 chr3 92037248 92037487 -125999671 - MSTA LTR MaLR 0 428 188 13317 201 63 25 chr3 92037507 92041657 -125995501 + L1MA2 LINE L1 20 4477 -3088 6735 139 11 4 chr3 92041676 92043158 -125994000 - L1MA1 LINE L1 0 6302 4809 5888 189 24 13 chr3 92043161 92044434 -125992724 + L1MA2 LINE L1 4485 5770 -1795 * 6362 156 11 5 chr3 92044432 92045791 -125991367 + L1MA2 LINE L1 6359 7723 0 646 262 19 53 chr3 92045795 92046174 -125990984 - L1 LINE L1 -3785 3063 2700 1482 310 33 55 chr3 92046189 92047087 -125990071 - L1PA15-16 LINE L1 -5948 901 23 24 96 0 0 chr3 92047239 92047312 -125989846 + AT_rich Low_complexity Low_complexity 1 73 0 5123 159 18 77 chr3 92047314 92047624 -125989534 - L1MC1 LINE L1 -2 6331 6004 2313 83 0 0 chr3 92047624 92047924 -125989234 + AluY SINE Alu 1 300 -11 5123 159 18 77 chr3 92047924 92048706 -125988452 - L1MC1 LINE L1 -329 6004 5345 562 244 15 15 chr3 92048706 92048837 -125988321 - FLAM_A SINE Alu -1 132 2 5123 159 18 77 chr3 92048837 92049174 -125987984 - L1MC1 LINE L1 -988 5345 4990 680 182 34 14 chr3 92049178 92049326 -125987832 + MLT1A1 LTR MaLR 1 151 -214 311 0 26 0 chr3 92049327 92049366 -125987792 + (TC)n Simple_repeat Simple_repeat 1 40 0 22 35 0 0 chr3 92050370 92050399 -125986759 + AT_rich Low_complexity Low_complexity 1 29 0 2505 74 0 0 chr3 92050448 92050759 -125986399 + AluY SINE Alu 1 311 0 275 404 35 7 chr3 92050817 92050958 -125986200 + L3 LINE CR1 1058 1202 -375 330 376 107 13 chr3 92050976 92051210 -125985948 + L3 LINE CR1 1308 1563 -14 21 36 0 0 chr3 92052635 92052663 -125984495 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr3 92053767 92053805 -125983353 + AT_rich Low_complexity Low_complexity 1 38 0 235 207 103 0 chr3 92054245 92054303 -125982855 - L2 LINE L2 -9 3304 3241 453 238 140 49 chr3 92054419 92054583 -125982575 + MER5A DNA MER1_type 9 187 -2 2712 66 0 3 chr3 92054825 92055175 -125981983 + L1PA8 LINE L1 5824 6172 0 201 39 0 0 chr3 92055804 92055830 -125981328 + (TG)n Simple_repeat Simple_repeat 1 26 0 2356 128 100 3 chr3 92056072 92056462 -125980696 + MSTA LTR MaLR 1 428 0 202 311 107 19 chr3 92058007 92058110 -125979048 + L2 LINE L2 2896 3007 -265 2961 257 88 44 chr3 92059276 92060903 -125976255 - L1MCc LINE L1 -2022 4919 3221 1127 297 58 27 chr3 92060950 92062071 -125975087 - L1MCc LINE L1 -4640 2482 1113 978 295 61 22 chr3 92062235 92062679 -125974479 - L1MCc LINE L1 -5943 480 20 1496 184 19 0 chr3 92063163 92063424 -125973734 - MSTC LTR MaLR -2 426 161 286 162 6 6 chr3 92064986 92065148 -125972010 + AluSx SINE Alu 49 302 0 595 283 135 21 chr3 92065382 92065827 -125971331 + MLT1H1 LTR MaLR 15 590 0 605 316 117 29 chr3 92065832 92066275 -125970883 + HAL1b LINE L1 331 812 -536 576 203 49 0 chr3 92066322 92066445 -125970713 - L1MA9 LINE L1 -38 6274 6146 1579 147 78 25 chr3 92066446 92066766 -125970392 + LTR7 LTR ERV1 1 337 -113 20784 124 20 29 chr3 92066776 92070679 -125966479 + HERVH LTR ERV1 1 3993 -3720 8046 130 4 5 chr3 92070662 92071901 -125965257 + HERVH LTR ERV1 3995 5317 -1774 * 2468 136 7 25 chr3 92071892 92072327 -125964831 + HERVH LTR ERV1 5590 6016 -1697 * 3718 99 14 13 chr3 92072320 92072876 -125964282 + HERVH LTR ERV1 7157 7713 0 2347 137 56 19 chr3 92072876 92073308 -125963850 + LTR7 LTR ERV1 1 448 -2 1857 252 20 87 chr3 92073309 92073790 -125963368 - L1MB1 LINE L1 -12 6360 5959 1492 217 0 20 chr3 92073790 92074094 -125963064 - AluJo SINE Alu -14 298 1 1857 252 20 87 chr3 92074094 92074460 -125962698 - L1MB1 LINE L1 -413 5959 5570 2395 208 111 39 chr3 92074481 92075208 -125961950 - L1MB1 LINE L1 -768 5582 4803 2378 285 39 76 chr3 92075323 92075611 -125961547 - L1MB1 LINE L1 -4175 2176 1879 2039 186 60 12 chr3 92075611 92076014 -125961144 + MSTB LTR MaLR 5 426 0 8065 193 14 30 chr3 92076014 92077693 -125959465 + MSTB-int LTR MaLR 1 1651 0 2228 170 54 5 chr3 92077693 92078099 -125959059 + MSTB LTR MaLR 1 426 0 2378 285 39 76 chr3 92078099 92078917 -125958241 - L1MB1 LINE L1 -4470 1881 1160 187 30 30 30 chr3 92078917 92078950 -125958208 + (TTTTG)n Simple_repeat Simple_repeat 4 36 0 2378 285 39 76 chr3 92078950 92079480 -125957678 - L1MB1 LINE L1 -5191 1160 612 1989 218 12 57 chr3 92079577 92080069 -125957089 - MER70A LTR ERVL 0 472 3 5883 159 16 4 chr3 92080144 92081325 -125955833 - L1MA3 LINE L1 -1 6304 5107 2453 170 31 6 chr3 92081322 92081810 -125955348 - L1MA3 LINE L1 -1722 4424 3925 * 2405 195 38 5 chr3 92081815 92082394 -125954764 - L1MA3 LINE L1 -2699 3447 2850 689 202 202 6 chr3 92082668 92082851 -125954307 + MER20 DNA MER1_type 1 219 0 2263 95 10 0 chr3 92082946 92083240 -125953918 - AluSx SINE Alu -15 297 1 40 73 0 0 chr3 92083304 92083386 -125953772 + AT_rich Low_complexity Low_complexity 1 82 0 289 346 20 0 chr3 92083386 92083487 -125953671 + MIR SINE MIR 160 262 0 366 299 61 35 chr3 92084905 92085102 -125952056 - L1MC4a LINE L1 -1882 5926 5725 216 0 0 0 chr3 92086944 92086968 -125950190 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 27 49 0 0 chr3 92087219 92087260 -125949898 + AT_rich Low_complexity Low_complexity 1 41 0 21 57 0 0 chr3 92087990 92088025 -125949133 + AT_rich Low_complexity Low_complexity 1 35 0 2398 54 7 7 chr3 92089675 92089973 -125947185 - AluY SINE Alu -13 298 1 240 35 0 0 chr3 92090325 92090354 -125946804 + (TA)n Simple_repeat Simple_repeat 2 30 0 24 53 0 0 chr3 92090782 92090820 -125946338 + AT_rich Low_complexity Low_complexity 1 38 0 361 232 14 109 chr3 92092358 92092496 -125944662 - MLT1D LTR MaLR -23 473 320 1455 236 23 14 chr3 92092790 92093142 -125944016 - MER4D LTR ERV1 0 903 549 1468 180 3 34 chr3 92093210 92093277 -125943881 - MER49 LTR ERV1 -638 285 217 2206 133 33 16 chr3 92093277 92093644 -125943514 + THE1C LTR MaLR 3 375 0 9959 127 35 7 chr3 92093644 92095181 -125941977 + THE1C-int LTR MaLR 1 1580 0 2030 138 78 0 chr3 92095181 92095529 -125941629 + THE1C LTR MaLR 1 375 0 1468 180 3 34 chr3 92095529 92095753 -125941405 - MER49 LTR ERV1 -703 220 1 826 255 4 51 chr3 92096879 92097114 -125940044 - MER58A DNA MER1_type 0 224 1 324 182 63 0 chr3 92097131 92097213 -125939945 + MIR3 SINE MIR 63 157 -51 187 342 63 13 chr3 92097175 92097254 -125939904 - MIR3 SINE MIR -53 155 73 * 2217 172 29 17 chr3 92097405 92097824 -125939334 - MSTB LTR MaLR -2 424 1 8279 197 13 17 chr3 92097824 92097902 -125939256 - MSTB-int LTR MaLR 0 1651 1574 2220 116 0 3 chr3 92097902 92098195 -125938963 - AluSg SINE Alu -16 294 3 8279 197 13 17 chr3 92098195 92099444 -125937714 - MSTB-int LTR MaLR -77 1574 330 1977 97 4 0 chr3 92099444 92099701 -125937457 - AluY SINE Alu -8 303 46 8279 197 13 17 chr3 92099701 92100030 -125937128 - MSTB-int LTR MaLR -1321 330 1 2291 162 31 14 chr3 92100030 92100449 -125936709 - MSTB LTR MaLR 0 426 1 1668 258 2 13 chr3 92101328 92101786 -125935372 - L1 LINE L1 -3344 2802 2350 2631 311 197 43 chr3 92102533 92104818 -125932340 + L2 LINE L2 40 2675 -639 2041 261 69 2 chr3 92105157 92105740 -125931418 + MLT1E3 LTR MaLR 3 624 0 190 348 0 11 chr3 92106108 92106197 -125930961 - MIR SINE MIR 0 262 175 1664 193 130 11 chr3 92106223 92106601 -125930557 - MSTA LTR MaLR -5 423 1 26 50 0 0 chr3 92107030 92107070 -125930088 + AT_rich Low_complexity Low_complexity 1 40 0 191 318 25 0 chr3 92107882 92107959 -125929199 + MIR SINE MIR 112 152 -56 408 285 83 0 chr3 92108304 92108448 -125928710 - MER63A DNA MER1_type -1 209 54 2126 99 3 0 chr3 92113655 92113975 -125923183 - AluSp SINE Alu 0 321 1 25 31 0 0 chr3 92114267 92114299 -125922859 + AT_rich Low_complexity Low_complexity 1 32 0 1723 190 7 0 chr3 92114504 92114804 -125922354 - AluJb SINE Alu -10 302 1 205 208 19 38 chr3 92115079 92115132 -125922026 - MIR SINE MIR -76 132 81 415 237 59 79 chr3 92116384 92116536 -125920622 - MER112 DNA MER1_type -27 233 85 271 0 51 0 chr3 92116542 92116581 -125920577 + (TG)n Simple_repeat Simple_repeat 2 42 0 1094 220 52 74 chr3 92116592 92116956 -125920202 + MLT1A2 LTR MaLR 2 357 -17 213 39 0 0 chr3 92116997 92117023 -125920135 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2836 170 26 12 chr3 92118742 92119313 -125917845 - L1MB3 LINE L1 -3 6180 5602 4046 221 30 10 chr3 92119326 92120262 -125916896 - L1MC3 LINE L1 -1314 6471 5517 268 287 46 0 chr3 92120444 92120531 -125916627 + MIR SINE MIR 70 160 -102 22 0 0 0 chr3 92120837 92120859 -125916299 + AT_rich Low_complexity Low_complexity 1 22 0 1339 121 24 0 chr3 92121432 92121639 -125915519 + L1PA10 LINE L1 5952 6163 -5 24 0 0 0 chr3 92121639 92121663 -125915495 + AT_rich Low_complexity Low_complexity 1 24 0 187 299 193 32 chr3 92122217 92122648 -125914510 - L2 LINE L2 -1017 2297 1798 260 53 26 0 chr3 92122768 92122806 -125914352 + (TC)n Simple_repeat Simple_repeat 1 39 0 204 286 16 0 chr3 92123419 92123482 -125913676 + MIR SINE MIR 196 259 -3 419 302 80 96 chr3 92123537 92123987 -125913171 + LTR67 LTR ERVL 115 557 0 1145 73 6 51 chr3 92124652 92124829 -125912329 - L1PA8 LINE L1 0 6172 6004 1488 156 68 17 chr3 92125596 92125891 -125911267 + L1MC1 LINE L1 6016 6325 -8 2021 133 89 12 chr3 92126842 92127180 -125909978 + THE1B LTR MaLR 1 364 0 231 125 0 0 chr3 92127257 92127297 -125909861 + (CA)n Simple_repeat Simple_repeat 2 41 0 1513 160 131 33 chr3 92129404 92129741 -125907417 + THE1C LTR MaLR 6 375 0 224 385 43 8 chr3 92131098 92131215 -125905943 - MIR3 SINE MIR -22 186 66 279 288 0 0 chr3 92131320 92131386 -125905772 - MIR SINE MIR -11 251 186 1245 141 94 31 chr3 92131389 92131645 -125905513 - L1PA15 LINE L1 -2 6163 5892 294 355 41 35 chr3 92131645 92131814 -125905344 - MIR SINE MIR -83 179 10 37 0 0 0 chr3 92131923 92131960 -125905198 + AT_rich Low_complexity Low_complexity 1 37 0 332 276 159 41 chr3 92132292 92132437 -125904721 - MIR SINE MIR -93 169 8 554 224 142 0 chr3 92132663 92132846 -125904312 + MER3 DNA MER1_type 1 209 0 275 214 18 0 chr3 92132869 92132925 -125904233 + MER112 DNA MER1_type 4 60 -200 26 30 0 0 chr3 92133711 92133744 -125903414 + AT_rich Low_complexity Low_complexity 1 33 0 306 0 0 0 chr3 92133838 92133872 -125903286 + (TA)n Simple_repeat Simple_repeat 2 35 0 561 99 0 0 chr3 92133872 92133953 -125903205 + (CA)n Simple_repeat Simple_repeat 2 82 0 26 50 0 0 chr3 92134395 92134435 -125902723 + AT_rich Low_complexity Low_complexity 1 40 0 246 228 26 18 chr3 92134736 92134850 -125902308 + (TA)n Simple_repeat Simple_repeat 1 115 0 399 251 44 131 chr3 92134857 92135132 -125902026 - L1ME LINE L1 -303 5818 5568 719 290 5 0 chr3 92135240 92135426 -125901732 - MER5A DNA MER1_type -2 187 1 353 269 139 19 chr3 92135528 92135736 -125901422 + L1 LINE L1 3525 3757 -2389 561 309 105 20 chr3 92135801 92136361 -125900797 + L1 LINE L1 3922 4546 -1600 305 309 45 54 chr3 92136611 92136925 -125900233 + L1MC/D LINE L1 4717 5027 -1119 28 71 0 0 chr3 92136927 92136983 -125900175 + AT_rich Low_complexity Low_complexity 1 56 0 390 288 49 0 chr3 92137148 92137379 -125899779 + L1MC/D LINE L1 5255 5503 -691 31 44 0 0 chr3 92137679 92137724 -125899434 + AT_rich Low_complexity Low_complexity 1 45 0 256 240 0 0 chr3 92137799 92137849 -125899309 - MER94 DNA DNA -80 54 5 2086 118 0 0 chr3 92139337 92139625 -125897533 + AluSc SINE Alu 2 289 -20 4909 80 9 14 chr3 92139642 92140332 -125896826 + L1PA8 LINE L1 5483 6168 -4 24 32 0 0 chr3 92141624 92141655 -125895503 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr3 92141989 92142017 -125895141 + AT_rich Low_complexity Low_complexity 1 28 0 2417 28 0 0 chr3 92142351 92142637 -125894521 + L1PA3 LINE L1 5867 6152 -3 31 0 0 0 chr3 92142637 92142668 -125894490 + AT_rich Low_complexity Low_complexity 1 31 0 37 62 0 0 chr3 92143006 92143071 -125894087 + AT_rich Low_complexity Low_complexity 1 65 0 26 30 0 0 chr3 92143147 92143180 -125893978 + AT_rich Low_complexity Low_complexity 1 33 0 223 313 9 52 chr3 92144255 92144370 -125892788 + L2 LINE L2 2301 2410 -904 1817 173 83 44 chr3 92145394 92145804 -125891354 - MSTB LTR MaLR 0 426 1 2101 120 0 0 chr3 92145940 92146231 -125890927 + AluSg1 SINE Alu 1 291 -18 267 369 74 20 chr3 92146514 92146663 -125890495 - L2 LINE L2 -603 2711 2555 9769 214 30 39 chr3 92146692 92148842 -125888316 + L1MA2 LINE L1 19 2148 -5417 11160 171 31 8 chr3 92148862 92152194 -125884964 + L1MA2 LINE L1 4316 7722 -1 816 118 33 7 chr3 92152608 92152760 -125884398 + CT-rich Low_complexity Low_complexity 3 158 0 331 141 28 42 chr3 92152762 92152833 -125884325 - L1PA16 LINE L1 -1 6165 6096 330 203 0 0 chr3 92152833 92152897 -125884261 + L1PA16 LINE L1 6048 6111 -55 21 0 0 0 chr3 92153340 92153361 -125883797 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr3 92153521 92153549 -125883609 + AT_rich Low_complexity Low_complexity 1 28 0 3494 50 20 0 chr3 92153630 92154071 -125883087 - L1PA6 LINE L1 -2 6152 5703 996 85 0 122 chr3 92154082 92154270 -125882888 + L1P LINE L1 4687 4851 -1295 2190 191 19 7 chr3 92154570 92154988 -125882170 - MSTB LTR MaLR -2 424 2 2191 118 0 0 chr3 92155037 92155341 -125881817 + AluSq SINE Alu 1 304 -9 240 167 0 0 chr3 92155526 92155574 -125881584 + (TA)n Simple_repeat Simple_repeat 2 49 0 907 93 0 46 chr3 92155833 92155984 -125881174 + L1PA8 LINE L1 6029 6172 0 216 0 0 0 chr3 92158117 92158141 -125879017 + (A)n Simple_repeat Simple_repeat 1 24 0 2191 78 20 7 chr3 92158491 92158785 -125878373 + AluSg SINE Alu 1 298 -12 253 279 75 20 chr3 92158832 92159033 -125878125 + L1MEc LINE L1 1256 1467 -4929 402 332 100 7 chr3 92159308 92159618 -125877540 + HAL1b LINE L1 434 772 -576 261 282 8 32 chr3 92159639 92159763 -125877395 + L1MCc LINE L1 58 178 -6245 258 313 10 0 chr3 92159768 92159867 -125877291 + L1MCc LINE L1 235 334 -6089 222 261 120 0 chr3 92160017 92160109 -125877049 - MER5C DNA MER1_type -5 319 217 251 407 0 0 chr3 92160137 92160255 -125876903 - MER5C DNA MER1_type -206 118 1 1367 215 31 3 chr3 92160313 92160601 -125876557 + AluJo SINE Alu 1 296 -16 289 296 45 39 chr3 92160792 92160971 -125876187 + L1M4 LINE L1 4529 4708 -1438 206 75 0 50 chr3 92161196 92161236 -125875922 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 275 227 35 64 chr3 92161355 92161687 -125875471 - L1M2c LINE L1 -4877 1550 1025 1841 142 34 47 chr3 92163480 92163860 -125873298 + THE1C LTR MaLR 1 375 0 818 19 19 0 chr3 92164451 92164554 -125872604 + (TTTTA)n Simple_repeat Simple_repeat 2 106 0 182 37 37 0 chr3 92164606 92164633 -125872525 + (TAA)n Simple_repeat Simple_repeat 1 28 0 1820 231 39 67 chr3 92164907 92165549 -125871609 + MLT1E3 LTR MaLR 1 624 0 23 33 0 0 chr3 92165627 92165657 -125871501 + AT_rich Low_complexity Low_complexity 1 30 0 456 261 23 109 chr3 92166090 92166347 -125870811 - MLT1J1 LTR MaLR -4 442 208 2116 150 62 60 chr3 92166386 92166805 -125870353 + MSTC LTR MaLR 4 423 -5 356 303 21 14 chr3 92166810 92166952 -125870206 - MLT1J1 LTR MaLR -276 170 28 322 195 0 106 chr3 92167393 92167498 -125869660 - L1MC5 LINE L1 -33 7928 7836 1792 188 3 52 chr3 92167498 92167882 -125869276 + MLT1A1 LTR MaLR 1 365 0 322 195 0 106 chr3 92167882 92167899 -125869259 - L1MC5 LINE L1 -125 7836 7819 183 419 16 16 chr3 92169186 92169310 -125867848 + L2 LINE L2 2509 2632 -682 21 36 0 0 chr3 92171349 92171377 -125865781 + AT_rich Low_complexity Low_complexity 1 28 0 33 43 0 0 chr3 92171554 92171601 -125865557 + AT_rich Low_complexity Low_complexity 1 47 0 225 228 97 88 chr3 92171867 92171981 -125865177 + MIR SINE MIR 90 204 -58 222 37 0 0 chr3 92172005 92172032 -125865126 + (TTTTA)n Simple_repeat Simple_repeat 5 31 0 2481 249 72 60 chr3 92172417 92173129 -125864029 - L1MD2 LINE L1 -20 6616 5914 2162 100 0 0 chr3 92173129 92173445 -125863713 - AluSg SINE Alu 0 316 1 2481 249 72 60 chr3 92173445 92173542 -125863616 - L1MD2 LINE L1 -722 5914 5820 2738 203 29 4 chr3 92173542 92174088 -125863070 + MER68 LTR ERV1 1 560 -2 2481 249 72 60 chr3 92174088 92175358 -125861800 - L1MD2 LINE L1 -816 5820 4550 1800 223 41 50 chr3 92175364 92176024 -125861134 - L1MD2 LINE L1 -4808 1732 1079 4048 70 2 2 chr3 92176029 92176583 -125860575 + L1PA8 LINE L1 5620 6173 0 2923 277 80 30 chr3 92176583 92177589 -125859569 - L1MD2 LINE L1 -5466 1074 19 189 107 0 0 chr3 92178055 92178083 -125859075 + (GA)n Simple_repeat Simple_repeat 2 29 0 1524 207 0 28 chr3 92179156 92179446 -125857712 + AluJo SINE Alu 6 287 -25 261 0 0 0 chr3 92179447 92179476 -125857682 + (TG)n Simple_repeat Simple_repeat 2 30 0 360 218 46 0 chr3 92179886 92179973 -125857185 - LTR50 LTR ERVL 0 795 705 740 253 121 19 chr3 92180325 92180582 -125856576 - LTR50 LTR ERVL -512 283 1 11361 93 27 30 chr3 92181687 92182418 -125854740 - HERVL-A2 LTR ERVL -4004 1650 919 333 0 0 0 chr3 92182418 92182455 -125854703 + (TA)n Simple_repeat Simple_repeat 1 37 0 11361 93 27 30 chr3 92182455 92183375 -125853783 - HERVL-A2 LTR ERVL -4735 919 3 2908 101 46 14 chr3 92183375 92183417 -125853741 - MLT2A2 LTR ERVL -3 450 411 598 0 38 38 chr3 92183417 92183523 -125853635 + (TA)n Simple_repeat Simple_repeat 1 106 0 2908 101 46 14 chr3 92183523 92183916 -125853242 - MLT2A2 LTR ERVL -42 411 1 3248 347 48 43 chr3 92183977 92186634 -125850524 - ERVL LTR ERVL -2448 3316 553 639 271 141 35 chr3 92187108 92187564 -125849594 - LTR50 LTR ERVL -16 779 191 2145 134 0 0 chr3 92188818 92189131 -125848027 - AluSq SINE Alu 0 313 1 23 86 0 0 chr3 92189605 92189663 -125847495 + AT_rich Low_complexity Low_complexity 1 58 0 3451 213 21 60 chr3 92189780 92190454 -125846704 + L1MB7 LINE L1 846 1472 -5383 1933 105 44 17 chr3 92190454 92190749 -125846409 + AluSx SINE Alu 3 305 -7 3451 213 21 60 chr3 92190749 92191169 -125845989 + L1MB7 LINE L1 1472 1906 -4949 3226 229 21 15 chr3 92191174 92191858 -125845300 + L1MB7 LINE L1 5707 6407 -588 1953 146 39 36 chr3 92191858 92192221 -125844937 - THE1B LTR MaLR 0 364 1 3226 229 21 15 chr3 92192221 92192667 -125844491 + L1MB7 LINE L1 6407 6849 -146 335 267 48 0 chr3 92192669 92192774 -125844384 + L1MB8 LINE L1 6069 6178 0 231 287 103 11 chr3 92194403 92194490 -125842668 + Tigger8 DNA MER2_type 132 226 -440 731 22 22 0 chr3 92194981 92195073 -125842085 + (TCTA)n Simple_repeat Simple_repeat 4 97 0 1265 187 4 13 chr3 92195073 92195303 -125841855 - AluJo SINE Alu -25 287 60 1786 176 33 30 chr3 92195508 92195872 -125841286 + MLT1A1 LTR MaLR 1 365 0 473 209 0 0 chr3 92195887 92195992 -125841166 - L1PA16 LINE L1 0 6166 6062 4906 139 23 5 chr3 92196116 92197231 -125839927 - L1PA16 LINE L1 0 6166 4997 24 0 0 0 chr3 92197289 92197313 -125839845 + AT_rich Low_complexity Low_complexity 1 24 0 356 253 36 25 chr3 92197313 92197474 -125839684 - FRAM SINE Alu -10 156 1 350 291 0 9 chr3 92197798 92197908 -125839250 - L1ME2 LINE L1 -18 6146 6038 1701 179 3 10 chr3 92198414 92198704 -125838454 + AluJo SINE Alu 1 288 -24 201 296 0 0 chr3 92198879 92198923 -125838235 - L2 LINE L2 -9 3304 3261 2952 116 11 7 chr3 92199039 92199477 -125837681 - MLT2A1 LTR ERVL -4 440 1 501 47 0 0 chr3 92199637 92199701 -125837457 + (TG)n Simple_repeat Simple_repeat 2 65 0 588 206 0 0 chr3 92199708 92199815 -125837343 - FLAM_C SINE Alu -36 107 1 371 338 124 33 chr3 92201876 92202296 -125834862 - L2 LINE L2 -16 3297 2840 55 40 0 0 chr3 92202500 92202576 -125834582 + AT_rich Low_complexity Low_complexity 1 76 0 488 114 0 0 chr3 92202828 92202898 -125834260 + L1PA10 LINE L1 6088 6157 -11 2212 114 48 20 chr3 92202980 92203331 -125833827 + THE1B LTR MaLR 2 362 -2 11159 109 10 1 chr3 92203333 92204892 -125832266 + THE1B-int LTR MaLR 1 1574 -6 2039 137 36 22 chr3 92204897 92205256 -125831902 + THE1B LTR MaLR 1 364 0 368 265 235 0 chr3 92205265 92205401 -125831757 + MIR SINE MIR 78 245 -17 202 311 16 0 chr3 92205644 92205705 -125831453 + L2 LINE L2 3248 3309 -4 825 265 17 13 chr3 92206078 92206308 -125830850 - MLT1E LTR MaLR -74 519 289 333 0 0 0 chr3 92206622 92206659 -125830499 + (A)n Simple_repeat Simple_repeat 1 37 0 35 0 0 0 chr3 92207112 92207147 -125830011 + AT_rich Low_complexity Low_complexity 1 35 0 202 174 66 0 chr3 92207149 92207316 -125829842 + (TA)n Simple_repeat Simple_repeat 1 178 0 189 131 39 77 chr3 92207322 92207452 -125829706 + (TATAA)n Simple_repeat Simple_repeat 5 129 0 22 35 0 0 chr3 92207472 92207501 -125829657 + AT_rich Low_complexity Low_complexity 1 29 0 247 234 47 8 chr3 92207504 92207632 -125829526 + (TA)n Simple_repeat Simple_repeat 1 133 0 215 203 17 0 chr3 92208634 92208693 -125828465 + (TA)n Simple_repeat Simple_repeat 2 61 0 351 0 0 0 chr3 92209169 92209208 -125827950 + (T)n Simple_repeat Simple_repeat 1 39 0 259 212 41 48 chr3 92209677 92209823 -125827335 + (TTATA)n Simple_repeat Simple_repeat 5 149 0 35 54 0 0 chr3 92209857 92209913 -125827245 + AT_rich Low_complexity Low_complexity 1 56 0 1427 310 45 24 chr3 92211365 92211916 -125825242 + L1M3e LINE L1 469 1031 -6458 3694 250 44 54 chr3 92212036 92212333 -125824825 + L1M3e LINE L1 1933 2231 -5334 267 31 0 0 chr3 92212333 92212365 -125824793 + (CA)n Simple_repeat Simple_repeat 2 33 0 3694 250 44 54 chr3 92212365 92212856 -125824302 + L1M3e LINE L1 2231 2725 -4840 1907 164 3 0 chr3 92212856 92213167 -125823991 - AluSx SINE Alu 0 312 1 3694 250 44 54 chr3 92213167 92214351 -125822807 + L1M3e LINE L1 2725 3885 -3680 643 189 0 0 chr3 92214364 92214491 -125822667 + L1M3e LINE L1 4807 4933 -2632 661 161 84 0 chr3 92214534 92214677 -125822481 - L1 LINE L1 -3691 2455 2301 192 200 0 0 chr3 92214678 92214728 -125822430 + (TATATG)n Simple_repeat Simple_repeat 4 53 0 9345 193 44 63 chr3 92214732 92215572 -125821586 + L1MA8 LINE L1 2447 3301 -2845 2396 68 0 0 chr3 92215572 92215881 -125821277 + L1PA6 LINE L1 5846 6154 0 2222 67 0 3 chr3 92215883 92216194 -125820964 + AluY SINE Alu 1 310 0 9345 193 44 63 chr3 92216194 92216205 -125820953 + L1MA8 LINE L1 3302 3312 -2834 2245 77 0 3 chr3 92216205 92216502 -125820656 + AluY SINE Alu 1 296 -15 9345 193 44 63 chr3 92216502 92216586 -125820572 + L1MA8 LINE L1 3312 3396 -2750 1950 149 3 7 chr3 92216586 92216895 -125820263 + AluSx SINE Alu 1 308 -4 9345 193 44 63 chr3 92216895 92217883 -125819275 + L1MA8 LINE L1 3396 4321 -1825 2287 94 0 0 chr3 92217883 92218180 -125818978 - AluSc SINE Alu -12 297 1 9345 193 44 63 chr3 92218180 92218763 -125818395 + L1MA8 LINE L1 4321 4913 -1233 1295 173 12 14 chr3 92218752 92219069 -125818089 + L1MA8 LINE L1 5131 5446 -743 * 2810 194 24 21 chr3 92219045 92219673 -125817485 + L1MA8 LINE L1 5662 6291 0 1636 163 58 0 chr3 92219737 92220013 -125817145 + AluJb SINE Alu 21 312 0 21 0 0 0 chr3 92220086 92220107 -125817051 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr3 92220568 92220604 -125816554 + AT_rich Low_complexity Low_complexity 1 36 0 32 26 0 0 chr3 92221953 92221992 -125815166 + AT_rich Low_complexity Low_complexity 1 39 0 3835 193 167 30 chr3 92222090 92223067 -125814091 + L1M1 LINE L1 1187 2361 -5204 22 35 0 0 chr3 92223202 92223231 -125813927 + AT_rich Low_complexity Low_complexity 1 29 0 234 204 80 71 chr3 92223293 92223406 -125813752 + L1ME4a LINE L1 6007 6120 -1 26 0 0 0 chr3 92223551 92223577 -125813581 + AT_rich Low_complexity Low_complexity 1 26 0 194 301 138 8 chr3 92223860 92223983 -125813175 + MIR SINE MIR 75 213 -49 3076 145 52 24 chr3 92224214 92225051 -125812107 + LTR1 LTR ERV1 2 785 0 2258 94 0 7 chr3 92225068 92225376 -125811782 - AluSq SINE Alu -4 309 4 308 246 49 70 chr3 92226529 92226671 -125810487 - LTR67 LTR ERVL -21 536 398 2656 220 6 6 chr3 92226711 92227256 -125809902 - LTR38 LTR ERV1 -11 545 1 1453 218 3 3 chr3 92228017 92228311 -125808847 + AluJo SINE Alu 1 294 -18 1567 46 68 5 chr3 92228319 92228538 -125808620 - L1M1 LINE L1 -708 5596 5364 1250 38 6 12 chr3 92228540 92228700 -125808458 + L1MA1 LINE L1 6143 6301 -1 32 75 0 0 chr3 92228705 92228772 -125808386 + AT_rich Low_complexity Low_complexity 1 67 0 1987 133 3 3 chr3 92229235 92229537 -125807621 - AluSx SINE Alu -10 302 1 21 36 0 0 chr3 92230803 92230831 -125806327 + AT_rich Low_complexity Low_complexity 1 28 0 1105 195 84 41 chr3 92232870 92233214 -125803944 - L1MB8 LINE L1 -1 6177 5819 1771 151 0 7 chr3 92233355 92233670 -125803488 + AluSx SINE Alu 7 319 0 4790 107 56 11 chr3 92233742 92234488 -125802670 - LTR17 LTR ERV1 0 780 1 23 33 0 0 chr3 92236864 92236894 -125800264 + AT_rich Low_complexity Low_complexity 1 30 0 771 211 134 5 chr3 92237934 92238128 -125799030 + MER20 DNA MER1_type 1 219 0 256 289 11 11 chr3 92238418 92238508 -125798650 + MLT1K LTR MaLR 491 580 -8 372 353 76 44 chr3 92238539 92238971 -125798187 - L2 LINE L2 -174 3098 2659 562 169 157 58 chr3 92239062 92239234 -125797924 + MLT1D LTR MaLR 317 505 0 242 336 93 0 chr3 92239379 92239486 -125797672 - MIR SINE MIR -70 192 76 215 123 18 70 chr3 92239727 92239784 -125797374 + T-rich Low_complexity Low_complexity 6 59 0 842 242 4 39 chr3 92240343 92240574 -125796584 - MER58A DNA MER1_type -1 223 1 1473 58 32 0 chr3 92240767 92240956 -125796202 + AluY SINE Alu 115 309 -2 929 178 6 0 chr3 92241792 92241972 -125795186 + AluY SINE Alu 130 310 -1 1890 38 4 0 chr3 92243692 92243927 -125793231 + L1PA4 LINE L1 5917 6152 -3 695 165 0 0 chr3 92244118 92244221 -125792937 + FLAM_C SINE Alu 21 123 -20 212 162 0 0 chr3 92244941 92244978 -125792180 + (CA)n Simple_repeat Simple_repeat 2 38 0 490 312 106 8 chr3 92245372 92245609 -125791549 - MLT1H LTR MaLR -185 364 105 266 353 33 0 chr3 92245837 92245959 -125791199 - MIR SINE MIR -42 220 95 505 203 119 0 chr3 92246076 92246194 -125790964 - FLAM_A SINE Alu 0 133 2 31 82 0 0 chr3 92246531 92246604 -125790554 + AT_rich Low_complexity Low_complexity 1 73 0 407 282 60 43 chr3 92246882 92247116 -125790042 - MLT1I LTR MaLR -8 401 164 1142 167 18 31 chr3 92247122 92247349 -125789809 + AluJo SINE Alu 82 305 -7 22 0 0 0 chr3 92247842 92247864 -125789294 + AT_rich Low_complexity Low_complexity 1 22 0 31 0 0 0 chr3 92248230 92248261 -125788897 + AT_rich Low_complexity Low_complexity 1 31 0 273 395 38 11 chr3 92249006 92249272 -125787886 + MLT1L LTR MaLR 1 273 -342 216 308 0 44 chr3 92250231 92250322 -125786836 + L2 LINE L2 3171 3257 -56 29 90 0 0 chr3 92250540 92250618 -125786540 + AT_rich Low_complexity Low_complexity 1 78 0 1705 231 50 3 chr3 92250851 92251228 -125785930 + MER89 LTR ERV1 156 550 -9 2148 122 39 33 chr3 92251708 92252070 -125785088 - THE1B LTR MaLR 0 364 1 29 78 0 0 chr3 92252386 92252450 -125784708 + AT_rich Low_complexity Low_complexity 1 64 0 31 44 0 0 chr3 92254750 92254795 -125782363 + AT_rich Low_complexity Low_complexity 1 45 0 21 82 0 0 chr3 92255262 92255311 -125781847 + AT_rich Low_complexity Low_complexity 1 49 0 2085 123 7 3 chr3 92255643 92255944 -125781214 - AluSg SINE Alu -8 302 1 925 169 0 79 chr3 92256033 92256222 -125780936 + AluJo SINE Alu 6 179 -133 529 315 39 25 chr3 92256222 92256502 -125780656 - LTR36 LTR ERV1 0 611 279 1944 128 0 7 chr3 92256660 92256941 -125780217 + AluSg SINE Alu 2 280 -30 312 140 0 0 chr3 92256948 92256998 -125780160 + L1PB4 LINE L1 6079 6128 -28 1337 205 132 43 chr3 92257002 92257494 -125779664 + LTR10B LTR ERV1 1 536 -11 2655 148 32 13 chr3 92257961 92258415 -125778743 - MER72 LTR ERV1 0 722 167 1495 148 4 0 chr3 92258415 92258644 -125778514 - MER30 DNA MER1_type 0 230 1 2655 148 32 13 chr3 92258644 92258808 -125778350 - MER72 LTR ERV1 -555 167 8 244 338 76 40 chr3 92258814 92259012 -125778146 - L2 LINE L2 -693 2621 2417 550 300 130 24 chr3 92259031 92259401 -125777757 + MLT1J2 LTR MaLR 20 428 -22 471 309 61 0 chr3 92259503 92259668 -125777490 - L2 LINE L2 -955 2359 2185 2173 81 28 8 chr3 92259811 92260207 -125776951 - LTR7 LTR ERV1 -2 448 1 2869 178 73 12 chr3 92260317 92260903 -125776255 + LTR29 LTR ERV1 1 622 0 1200 111 0 0 chr3 92261955 92262135 -125775023 + (TA)n Simple_repeat Simple_repeat 1 180 0 205 182 0 0 chr3 92262135 92262168 -125774990 + (TATATG)n Simple_repeat Simple_repeat 2 34 0 252 130 0 0 chr3 92262168 92262214 -125774944 - LTR66 LTR ERVL -171 439 394 192 283 19 19 chr3 92262265 92262318 -125774840 + L2 LINE L2 3147 3199 -73 3910 147 13 2 chr3 92262347 92262975 -125774183 + MER41B LTR ERV1 1 635 0 1607 203 0 7 chr3 92263343 92263634 -125773524 - AluJo SINE Alu -6 306 18 214 354 82 0 chr3 92263707 92263854 -125773304 - L2 LINE L2 -561 2753 2595 305 373 106 32 chr3 92263922 92264055 -125773103 - L2 LINE L2 -850 2464 2342 1871 224 40 89 chr3 92264055 92264782 -125772376 + LTR8 LTR ERV1 1 691 0 305 373 106 32 chr3 92264782 92265091 -125772067 - L2 LINE L2 -972 2342 1989 1577 197 69 48 chr3 92265474 92266016 -125771142 + MER67C LTR ERV1 1 510 -4 2300 96 0 10 chr3 92266396 92266710 -125770448 + AluSx SINE Alu 1 311 -1 354 23 0 0 chr3 92266711 92266754 -125770404 + (TA)n Simple_repeat Simple_repeat 1 43 0 1025 287 75 25 chr3 92267636 92268037 -125769121 + LTR16C LTR ERVL 47 467 -24 277 282 0 14 chr3 92268043 92268114 -125769044 + MLT1J LTR MaLR 110 179 -332 27 0 0 0 chr3 92268492 92268519 -125768639 + AT_rich Low_complexity Low_complexity 1 27 0 2577 46 0 0 chr3 92268609 92268913 -125768245 - AluY SINE Alu -5 306 3 942 228 48 89 chr3 92269357 92269673 -125767485 + MLT1D LTR MaLR 188 490 -15 440 269 109 0 chr3 92269779 92269898 -125767260 + HERV16 LTR ERVL 995 1126 -3870 936 312 38 19 chr3 92270053 92270418 -125766740 + LTR16A LTR ERVL 69 440 -10 304 336 60 60 chr3 92271032 92271300 -125765858 - L2 LINE L2 -354 2960 2693 203 395 36 6 chr3 92272864 92273031 -125764127 + L2 LINE L2 2216 2387 -927 347 362 63 14 chr3 92273541 92273762 -125763396 - MIR SINE MIR -2 260 29 673 184 20 7 chr3 92274495 92274642 -125762516 - L1MD3 LINE L1 -21 7974 7826 591 213 53 53 chr3 92274643 92274868 -125762290 - L1MC4a LINE L1 -813 6995 6771 23 33 0 0 chr3 92274868 92274898 -125762260 + AT_rich Low_complexity Low_complexity 1 30 0 183 80 53 53 chr3 92274899 92274974 -125762184 + (TTATA)n Simple_repeat Simple_repeat 5 79 0 450 296 28 0 chr3 92274996 92275138 -125762020 - L1MC4 LINE L1 -1201 6841 6696 2713 246 73 27 chr3 92275145 92276355 -125760803 - L1MD3 LINE L1 -743 5403 5178 2114 102 17 0 chr3 92276511 92276805 -125760353 + AluSp SINE Alu 1 299 -14 24 0 0 0 chr3 92277006 92277030 -125760128 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr3 92277370 92277403 -125759755 + AT_rich Low_complexity Low_complexity 1 33 0 250 176 0 29 chr3 92277601 92277669 -125759489 + GA-rich Low_complexity Low_complexity 4 69 0 537 339 29 13 chr3 92277985 92278224 -125758934 + MIR SINE MIR 2 244 -18 411 266 127 17 chr3 92278681 92278854 -125758304 + MIR SINE MIR 70 261 -1 223 320 24 80 chr3 92280779 92280904 -125756254 - MER5B DNA MER1_type 0 178 61 22 35 0 0 chr3 92281121 92281150 -125756008 + AT_rich Low_complexity Low_complexity 1 29 0 2078 176 5 62 chr3 92281689 92282138 -125755020 - MSTB LTR MaLR 0 426 4 304 321 77 36 chr3 92282138 92282306 -125754852 - L3 LINE CR1 -56 1521 1347 214 343 82 8 chr3 92282519 92282653 -125754505 + MIR3 SINE MIR 53 196 -12 1716 103 13 87 chr3 92283400 92283710 -125753448 + AluSx SINE Alu 24 310 -2 199 194 0 0 chr3 92283740 92283776 -125753382 - L2 LINE L2 -15 3298 3263 1867 157 0 17 chr3 92283813 92284107 -125753051 + AluSx SINE Alu 1 289 -23 258 114 68 0 chr3 92284854 92284898 -125752260 + MSTC LTR MaLR 1 47 -349 373 180 0 0 chr3 92284906 92284967 -125752191 - 7SK RNA RNA 0 193 133 496 254 79 12 chr3 92284995 92285160 -125751998 - 7SK RNA RNA -17 176 1 658 204 0 34 chr3 92285184 92285331 -125751827 + MSTC LTR MaLR 78 219 -209 3837 125 29 55 chr3 92285451 92285791 -125751367 + L1MA2 LINE L1 2380 2727 -4838 1788 131 0 48 chr3 92285791 92286081 -125751077 + AluSx SINE Alu 1 276 -36 3837 125 29 55 chr3 92286081 92286363 -125750795 + L1MA2 LINE L1 2727 2979 -4586 2342 99 0 10 chr3 92286363 92286676 -125750482 - AluSp SINE Alu 0 313 4 3837 125 29 55 chr3 92286676 92286859 -125750299 + L1MA2 LINE L1 2979 3165 -4400 3988 198 11 10 chr3 92286894 92288187 -125748971 + L1MA2 LINE L1 3165 4459 -3106 6095 149 54 3 chr3 92288199 92289575 -125747583 + L1MA2 LINE L1 5787 7275 -448 225 0 0 0 chr3 92289575 92289600 -125747558 + (CA)n Simple_repeat Simple_repeat 2 26 0 6095 149 54 3 chr3 92289600 92290073 -125747085 + L1MA2 LINE L1 7275 7722 -1 204 40 0 0 chr3 92290865 92290890 -125746268 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 371 51 0 34 chr3 92291216 92291275 -125745883 + (TCTCTG)n Simple_repeat Simple_repeat 4 60 0 486 213 0 61 chr3 92291740 92291904 -125745254 - L1MA7 LINE L1 0 6291 6138 25 65 0 0 chr3 92292125 92292171 -125744987 + AT_rich Low_complexity Low_complexity 1 46 0 243 88 0 0 chr3 92292906 92292940 -125744218 + (A)n Simple_repeat Simple_repeat 1 34 0 301 258 38 150 chr3 92294291 92294405 -125742753 - LTR16C LTR ERVL 0 491 366 2154 95 7 0 chr3 92294405 92294690 -125742468 + AluSp SINE Alu 1 287 -26 1571 0 6 0 chr3 92294696 92294875 -125742283 + (TAAAA)n Simple_repeat Simple_repeat 1 180 0 301 258 38 150 chr3 92294875 92295020 -125742138 - LTR16C LTR ERVL -130 361 255 927 263 23 0 chr3 92295081 92295298 -125741860 - MER58A DNA MER1_type -1 223 2 21 0 0 0 chr3 92296240 92296261 -125740897 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 92296965 92296986 -125740172 + AT_rich Low_complexity Low_complexity 1 21 0 1673 130 20 37 chr3 92296987 92297287 -125739871 - L1PA16 LINE L1 -17 6149 5855 748 245 102 70 chr3 92297542 92297990 -125739168 + MLT1E1 LTR MaLR 69 578 -76 576 259 10 8 chr3 92297993 92298144 -125739014 - MIR SINE MIR -63 145 13 306 0 0 0 chr3 92298330 92298364 -125738794 + (TG)n Simple_repeat Simple_repeat 1 34 0 295 304 81 86 chr3 92298427 92299503 -125737655 - L1MEc LINE L1 -5290 1106 36 358 284 26 9 chr3 92300129 92300151 -125737007 + L1MC4 LINE L1 6586 6606 -1436 2476 24 0 0 chr3 92300151 92300439 -125736719 + L1PA5 LINE L1 5852 6139 -15 358 284 26 9 chr3 92300439 92300532 -125736626 + L1MC4 LINE L1 6606 6703 -1339 2444 61 0 0 chr3 92300544 92300841 -125736317 + AluY SINE Alu 1 297 -14 21 57 0 0 chr3 92301645 92301680 -125735478 + AT_rich Low_complexity Low_complexity 1 35 0 219 189 0 0 chr3 92301850 92301903 -125735255 + (TA)n Simple_repeat Simple_repeat 2 54 0 7624 164 27 75 chr3 92303757 92306847 -125730311 - L1MA3 LINE L1 0 6305 3373 3003 85 33 0 chr3 92306849 92307271 -125729887 - L1PA7 LINE L1 0 6154 5719 393 236 69 7 chr3 92307274 92307418 -125729740 - L1MA3 LINE L1 -2896 3250 3098 26 0 0 0 chr3 92308676 92308702 -125728456 + AT_rich Low_complexity Low_complexity 1 26 0 234 163 78 16 chr3 92308917 92309046 -125728112 + (TA)n Simple_repeat Simple_repeat 2 138 0 299 310 96 30 chr3 92309303 92309500 -125727658 - MIR SINE MIR -45 217 8 570 276 64 47 chr3 92309561 92310011 -125727147 + L1MC5 LINE L1 7454 7911 -50 27 29 0 0 chr3 92310317 92310351 -125726807 + AT_rich Low_complexity Low_complexity 1 34 0 1169 88 47 47 chr3 92310467 92310659 -125726499 + L1PA12 LINE L1 5970 6161 -7 26 50 0 0 chr3 92311256 92311296 -125725862 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chr3 92311521 92311550 -125725608 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 92312035 92312056 -125725102 + AT_rich Low_complexity Low_complexity 1 21 0 1080 205 138 41 chr3 92312090 92312431 -125724727 - MLT1A2 LTR MaLR 0 374 1 513 271 110 18 chr3 92312513 92312731 -125724427 + MIR SINE MIR 4 241 -21 263 336 27 47 chr3 92312795 92312944 -125724214 - L2 LINE L2 0 3313 3168 439 355 80 0 chr3 92313151 92313413 -125723745 - L2 LINE L2 -424 2890 2608 1236 227 20 53 chr3 92313972 92314369 -125722789 - MLT1B LTR MaLR -3 387 4 1561 242 128 7 chr3 92314376 92314805 -125722353 - MLT1B-int LTR MaLR -5 1730 1250 381 253 35 0 chr3 92314824 92314911 -125722247 - MLT1B-int LTR MaLR -969 766 677 2640 215 62 41 chr3 92314977 92315730 -125721428 - MLT1A1-int LTR MaLR -482 889 33 26 0 0 0 chr3 92316868 92316894 -125720264 + AT_rich Low_complexity Low_complexity 1 26 0 5103 209 13 25 chr3 92318847 92320014 -125717144 + L1 LINE L1 3321 4473 -1673 2134 132 0 0 chr3 92320781 92321077 -125716081 - AluSx SINE Alu -16 296 1 243 0 0 0 chr3 92321995 92322022 -125715136 + (TA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr3 92322047 92322068 -125715090 + AT_rich Low_complexity Low_complexity 1 21 0 197 247 86 37 chr3 92322652 92322733 -125714425 + MIR3 SINE MIR 110 194 -14 1414 98 0 5 chr3 92323829 92324034 -125713124 + pTR5 LTR ERV1 189 392 -2046 1003 64 0 0 chr3 92325986 92326111 -125711047 - AluSg/x SINE Alu -8 304 180 429 293 96 16 chr3 92326564 92326752 -125710406 + L2 LINE L2 2705 2907 -407 566 234 92 38 chr3 92326824 92327008 -125710150 - MLT1A1 LTR MaLR 0 365 172 420 171 34 23 chr3 92327039 92327127 -125710031 - MLT1A1 LTR MaLR -339 89 1 479 270 45 52 chr3 92327128 92327421 -125709737 - MLT1G1 LTR MaLR -69 521 143 369 304 32 24 chr3 92327428 92327553 -125709605 - MLT1G1 LTR MaLR -399 191 66 693 343 95 30 chr3 92327554 92327756 -125709402 + L2 LINE L2 1880 2067 -1247 2157 121 0 0 chr3 92327756 92328054 -125709104 - AluSx SINE Alu -14 298 1 693 343 95 30 chr3 92328054 92328557 -125708601 + L2 LINE L2 2067 2631 -683 407 289 163 32 chr3 92328704 92328981 -125708177 + MLT1J2 LTR MaLR 115 427 -23 337 236 21 88 chr3 92329010 92329336 -125707822 + L1MEc LINE L1 2050 2327 -3888 503 197 0 41 chr3 92329336 92329458 -125707700 + L1PA16 LINE L1 6034 6150 -16 24 53 0 0 chr3 92329471 92329509 -125707649 + AT_rich Low_complexity Low_complexity 1 38 0 285 229 0 16 chr3 92329687 92329748 -125707410 + MER5A DNA MER1_type 10 69 -120 307 347 55 51 chr3 92329799 92330214 -125706944 + L2 LINE L2 2804 3220 -93 2818 21 24 0 chr3 92330214 92330546 -125706612 - L1PA3 LINE L1 -257 5898 5559 1927 45 8 0 chr3 92330546 92330788 -125706370 + L1PA3 LINE L1 5911 6155 0 24 32 0 0 chr3 92330797 92330828 -125706330 + AT_rich Low_complexity Low_complexity 1 31 0 1286 126 21 0 chr3 92330828 92331019 -125706139 + MSTB LTR MaLR 184 378 -48 632 196 40 27 chr3 92331163 92331459 -125705699 + AluY SINE Alu 2 301 0 23 33 0 0 chr3 92331630 92331660 -125705498 + AT_rich Low_complexity Low_complexity 1 30 0 21 71 0 0 chr3 92331752 92331794 -125705364 + AT_rich Low_complexity Low_complexity 1 42 0 1124 112 15 46 chr3 92332237 92332433 -125704725 + LTR1B LTR ERV1 1 190 -636 580 197 8 16 chr3 92332428 92332555 -125704603 + LTR1B LTR ERV1 701 826 0 * 22 56 0 0 chr3 92332754 92332790 -125704368 + AT_rich Low_complexity Low_complexity 1 36 0 1738 93 48 108 chr3 92332886 92333218 -125703940 + AluSp SINE Alu 1 312 -1 298 157 0 38 chr3 92334392 92334471 -125702687 - L1MA4A LINE L1 -1 6302 6228 1046 209 60 0 chr3 92334538 92334840 -125702318 + MER33 DNA MER1_type 5 324 0 238 300 0 0 chr3 92335188 92335238 -125701920 + L2 LINE L2 3219 3268 -4 180 0 0 0 chr3 92335708 92335728 -125701430 + (TA)n Simple_repeat Simple_repeat 2 21 0 1622 199 0 10 chr3 92336611 92336917 -125700241 - AluJo SINE Alu -7 305 3 202 402 53 20 chr3 92337176 92337251 -125699907 - L2 LINE L2 -1894 1420 1349 1510 210 38 32 chr3 92337251 92337623 -125699535 - MLT1A2 LTR MaLR 0 374 1 202 402 53 20 chr3 92337623 92337791 -125699367 - L2 LINE L2 -1965 1349 1169 2155 71 14 14 chr3 92338478 92338640 -125698518 - AluY SINE Alu -14 297 133 2503 39 3 7 chr3 92338640 92338949 -125698209 - AluY SINE Alu -3 308 1 2155 71 14 14 chr3 92338949 92339083 -125698075 - AluY SINE Alu -177 134 1 228 67 0 0 chr3 92339513 92339543 -125697615 + (T)n Simple_repeat Simple_repeat 1 30 0 180 111 0 0 chr3 92340188 92340215 -125696943 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr3 92340436 92340459 -125696699 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr3 92340796 92340822 -125696336 + AT_rich Low_complexity Low_complexity 1 26 0 204 67 0 0 chr3 92342343 92342373 -125694785 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 276 102 0 0 chr3 92342368 92342417 -125694741 + (GA)n Simple_repeat Simple_repeat 2 50 0 36 62 0 0 chr3 92342871 92342935 -125694223 + AT_rich Low_complexity Low_complexity 1 64 0 34 45 0 15 chr3 92343820 92343846 -125693312 + AT_rich Low_complexity Low_complexity 1 26 -39 2288 81 0 3 chr3 92343846 92344141 -125693017 + AluY SINE Alu 3 296 -15 34 45 0 15 chr3 92344141 92344180 -125692978 + AT_rich Low_complexity Low_complexity 26 65 0 30 45 0 0 chr3 92346776 92346820 -125690338 + AT_rich Low_complexity Low_complexity 1 44 0 20481 77 4 5 chr3 92346868 92349619 -125687539 + L1P LINE L1 11 2758 -3388 25 51 0 0 chr3 92350265 92350304 -125686854 + AT_rich Low_complexity Low_complexity 1 39 0 23 33 0 0 chr3 92352592 92352622 -125684536 + AT_rich Low_complexity Low_complexity 1 30 0 366 397 7 0 chr3 92353395 92353536 -125683622 + MIR3 SINE MIR 58 199 -9 767 249 63 5 chr3 92353907 92354112 -125683046 - MER20 DNA MER1_type -2 217 1 989 175 55 0 chr3 92354179 92354362 -125682796 + L1PB4 LINE L1 5951 6143 -13 268 361 70 22 chr3 92355978 92356208 -125680950 + MIR SINE MIR 22 262 0 1887 124 84 22 chr3 92356260 92356582 -125680576 + THE1B LTR MaLR 23 364 0 2192 183 48 61 chr3 92356863 92357422 -125679736 + MER34B LTR ERV1 14 565 0 215 310 81 11 chr3 92357512 92357599 -125679559 - MIR SINE MIR -50 212 120 203 301 123 0 chr3 92358026 92358099 -125679059 - MIR SINE MIR -128 134 53 523 188 31 31 chr3 92359590 92359750 -125677408 - L1MA9 LINE L1 -2 6310 6151 22 0 0 0 chr3 92359811 92359833 -125677325 + AT_rich Low_complexity Low_complexity 1 22 0 597 184 29 0 chr3 92359833 92359936 -125677222 - U6 snRNA snRNA 0 107 2 366 280 90 20 chr3 92360141 92360402 -125676756 + L1ME LINE L1 1804 2034 -867 562 207 42 7 chr3 92360516 92360651 -125676507 + MLT1C LTR MaLR 303 422 -45 302 314 44 25 chr3 92361161 92361320 -125675838 + L1ME LINE L1 2694 2855 -3685 479 291 86 58 chr3 92361333 92361728 -125675430 - MLT1J LTR MaLR -7 504 99 359 263 42 0 chr3 92361800 92361895 -125675263 + L1ME LINE L1 2866 2964 -3576 229 174 26 52 chr3 92361920 92362035 -125675123 + (TA)n Simple_repeat Simple_repeat 1 112 0 25 83 0 0 chr3 92362240 92362300 -125674858 + AT_rich Low_complexity Low_complexity 1 60 0 584 335 8 0 chr3 92362608 92362859 -125674299 + L1ME LINE L1 3973 4225 -2315 857 206 0 12 chr3 92362970 92363140 -125674018 - AluJo SINE Alu -30 282 115 365 339 46 29 chr3 92363142 92363381 -125673777 + L1ME LINE L1 4527 4769 -1771 240 250 134 9 chr3 92363463 92363575 -125673583 + L1ME LINE L1 4861 4986 -1554 240 35 0 0 chr3 92363973 92364002 -125673156 + (TAA)n Simple_repeat Simple_repeat 2 30 0 281 295 23 0 chr3 92364081 92364210 -125672948 + L1ME LINE L1 5532 5663 -877 299 299 69 6 chr3 92364419 92364593 -125672565 + L1ME LINE L1 5955 6139 -419 22 0 0 0 chr3 92364690 92364712 -125672446 + AT_rich Low_complexity Low_complexity 1 22 0 184 256 24 49 chr3 92365538 92365620 -125671538 + L2 LINE L2 1661 1740 -1574 3966 218 30 21 chr3 92369089 92370997 -125666161 - L1MB4 LINE L1 -15 6165 4240 306 0 0 0 chr3 92370999 92371033 -125666125 + (TA)n Simple_repeat Simple_repeat 1 34 0 942 237 0 0 chr3 92371233 92371423 -125665735 - L1M3 LINE L1 -477 5706 5517 303 71 0 0 chr3 92371424 92371466 -125665692 + (TA)n Simple_repeat Simple_repeat 2 43 0 1054 243 0 8 chr3 92371466 92371705 -125665453 - L1MB4 LINE L1 -1922 4224 3988 1268 227 40 9 chr3 92371713 92372035 -125665123 - L1MB4 LINE L1 -2378 3768 3437 646 242 0 0 chr3 92372710 92372842 -125664316 - FLAM_A SINE Alu -1 132 1 615 198 0 9 chr3 92373697 92373813 -125663345 - L1PA16 LINE L1 -303 5863 5749 22 70 0 0 chr3 92373948 92373991 -125663167 + AT_rich Low_complexity Low_complexity 1 43 0 3813 164 28 0 chr3 92374228 92374919 -125662239 - L1PA16 LINE L1 -3 6163 5454 259 308 103 27 chr3 92376274 92376420 -125660738 - MER5A DNA MER1_type 0 189 33 186 133 0 0 chr3 92376691 92376721 -125660437 + (GAA)n Simple_repeat Simple_repeat 2 31 0 2216 113 0 0 chr3 92376835 92377145 -125660013 + AluY SINE Alu 1 310 -1 444 306 116 47 chr3 92378255 92378530 -125658628 - L2 LINE L2 -9 3304 3011 615 165 6 25 chr3 92380012 92380189 -125656969 + MER2 DNA MER2_type 1 210 -135 227 367 0 0 chr3 92380217 92380296 -125656862 + MER2 DNA MER2_type 267 345 0 24 0 0 0 chr3 92380481 92380505 -125656653 + AT_rich Low_complexity Low_complexity 1 24 0 449 306 103 52 chr3 92380947 92381456 -125655702 + ERVL LTR ERVL 3939 4447 -1207 2402 87 59 11 chr3 92381585 92381943 -125655215 - THE1C LTR MaLR 0 375 1 2117 91 97 26 chr3 92382294 92382644 -125654514 + THE1C LTR MaLR 1 375 0 1707 66 0 0 chr3 92382891 92383117 -125654041 - L1PA5 LINE L1 0 6154 5929 304 329 87 25 chr3 92384489 92384650 -125652508 - MIR SINE MIR -72 190 20 292 169 0 22 chr3 92384769 92384858 -125652300 + (TA)n Simple_repeat Simple_repeat 2 88 0 315 0 0 0 chr3 92384892 92384927 -125652231 + (CA)n Simple_repeat Simple_repeat 2 36 0 1003 183 98 98 chr3 92384927 92385212 -125651946 - MLT1A1 LTR MaLR -70 295 11 22 80 0 0 chr3 92385213 92385263 -125651895 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr3 92386862 92386883 -125650275 + AT_rich Low_complexity Low_complexity 1 21 0 457 329 85 25 chr3 92387592 92387911 -125649247 + L2 LINE L2 1804 2141 -1173 3971 232 23 12 chr3 92388069 92389029 -125648129 - L1PA13 LINE L1 -4633 2154 1185 393 332 39 62 chr3 92389057 92389313 -125647845 - L1PA13 LINE L1 -5947 840 591 222 313 60 48 chr3 92389462 92389628 -125647530 - L2 LINE L2 -438 2876 2709 249 83 0 0 chr3 92389629 92389665 -125647493 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2302 56 7 7 chr3 92389665 92389969 -125647189 - L1PA5 LINE L1 -11 6143 5840 834 267 107 30 chr3 92390124 92390565 -125646593 - MLT1E LTR MaLR -3 590 98 241 288 68 38 chr3 92390617 92390749 -125646409 - MLT1E-int LTR MaLR 0 1371 1236 497 213 101 57 chr3 92390799 92390958 -125646200 + MLT1H1 LTR MaLR 412 553 -2 303 104 0 0 chr3 92391850 92391898 -125645260 + (TC)n Simple_repeat Simple_repeat 2 49 0 235 274 29 20 chr3 92391898 92392000 -125645158 + L2 LINE L2 2149 2251 -1063 270 0 0 0 chr3 92392322 92392352 -125644806 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 180 0 0 0 chr3 92393370 92393390 -125643768 + (A)n Simple_repeat Simple_repeat 1 20 0 278 194 0 56 chr3 92394727 92394835 -125642323 + (TAAA)n Simple_repeat Simple_repeat 4 105 0 689 308 77 13 chr3 92395388 92395622 -125641536 - MIR SINE MIR 0 262 14 2392 198 31 2 chr3 92397898 92398379 -125638779 - LTR42 LTR ERVL 0 495 1 1220 208 106 67 chr3 92398706 92399168 -125637990 + LTR48 LTR ERV1 1 480 -307 633 225 55 45 chr3 92399185 92399385 -125637773 + LTR48 LTR ERV1 586 787 0 1830 109 25 14 chr3 92400205 92400490 -125636668 - AluSc SINE Alu -21 288 1 263 247 27 82 chr3 92401303 92401456 -125635702 + MIR SINE MIR 36 180 -28 203 130 0 22 chr3 92401539 92401585 -125635573 + (TAA)n Simple_repeat Simple_repeat 1 45 0 707 281 39 0 chr3 92401616 92401794 -125635364 - MIR SINE MIR -73 189 5 234 260 83 10 chr3 92402679 92402775 -125634383 - MLT1K LTR MaLR -158 430 328 230 150 67 17 chr3 92404215 92404275 -125632883 - L1ME LINE L1 -687 5434 5372 4698 187 44 13 chr3 92405228 92406623 -125630535 + L1MA8 LINE L1 4858 6291 0 202 344 111 0 chr3 92407015 92407105 -125630053 - L2 LINE L2 -20 3252 3153 185 323 20 94 chr3 92407264 92407465 -125629693 - L2 LINE L2 -261 3011 2826 532 348 131 20 chr3 92408076 92408688 -125628470 - L2 LINE L2 -829 2485 1806 202 368 103 0 chr3 92409731 92409886 -125627272 + MIR SINE MIR 36 206 -56 621 23 35 0 chr3 92411228 92411315 -125625843 + (TAGA)n Simple_repeat Simple_repeat 4 93 0 27 0 0 0 chr3 92411430 92411457 -125625701 + AT_rich Low_complexity Low_complexity 1 27 0 267 91 30 15 chr3 92411457 92411523 -125625635 + (TTAA)n Simple_repeat Simple_repeat 1 67 0 21 36 0 0 chr3 92411530 92411558 -125625600 + AT_rich Low_complexity Low_complexity 1 28 0 249 263 105 40 chr3 92412265 92412341 -125624817 + L2 LINE L2 3199 3279 -34 21 0 0 0 chr3 92412369 92412390 -125624768 + AT_rich Low_complexity Low_complexity 1 21 0 20351 51 3 0 chr3 92412459 92415816 -125621342 - L1PA5 LINE L1 -8 6146 2786 655 319 72 24 chr3 92416012 92416385 -125620773 + L2 LINE L2 2334 2724 -590 4120 62 2 2 chr3 92418333 92418863 -125618295 - L1PA7 LINE L1 -8 6146 5617 3507 77 2 0 chr3 92418885 92419337 -125617821 - MLT2A2 LTR ERVL 0 453 1 282 340 128 6 chr3 92419342 92419498 -125617660 + L3 LINE CR1 1400 1574 -3 2293 111 46 8 chr3 92419813 92420164 -125616994 - THE1B LTR MaLR 0 364 1 2148 196 106 7 chr3 92420166 92420630 -125616528 - LTR53 LTR ERVL -9 510 1 757 317 166 26 chr3 92421235 92421843 -125615315 + L3 LINE CR1 260 952 -625 192 200 0 0 chr3 92422050 92422090 -125615068 + (TA)n Simple_repeat Simple_repeat 1 40 0 2402 50 7 7 chr3 92422091 92422390 -125614768 - AluY SINE Alu -12 299 1 210 158 0 0 chr3 92422921 92422959 -125614199 + T-rich Low_complexity Low_complexity 1 38 0 189 0 0 0 chr3 92426236 92426257 -125610901 + (CAAG)n Simple_repeat Simple_repeat 2 22 0 331 323 57 42 chr3 92426769 92426961 -125610197 - MIR3 SINE MIR -13 195 1 4651 237 41 38 chr3 92427475 92429024 -125608134 - Looper DNA T2_type -5 1553 1 7471 200 32 10 chr3 92429316 92431530 -125605628 - L1PA15 LINE L1 -3 6813 4542 2226 75 3 3 chr3 92431530 92431823 -125605335 + AluY SINE Alu 1 293 -18 7471 200 32 10 chr3 92431823 92432115 -125605043 - L1PA15 LINE L1 -2274 4542 4258 6027 60 14 1 chr3 92432124 92432903 -125604255 - L1PA7 LINE L1 -2 6152 5364 984 110 0 0 chr3 92432895 92433040 -125604118 + L1PA7 LINE L1 5207 5351 -795 * 6580 248 42 11 chr3 92433051 92434992 -125602166 - L1PA15 LINE L1 -2546 4251 2251 1983 250 14 28 chr3 92435156 92435652 -125601506 - L1PA15 LINE L1 -6298 489 1 361 273 31 8 chr3 92436517 92436645 -125600513 - MER94 DNA DNA -3 131 1 5334 119 197 85 chr3 92438047 92439445 -125597713 - pTR5 LTR ERV1 -144 2294 741 2145 118 18 77 chr3 92440249 92440640 -125596518 - L1PB2 LINE L1 -2 6149 5782 390 116 31 54 chr3 92440640 92440906 -125596252 + (TA)n Simple_repeat Simple_repeat 1 259 0 2068 111 12 36 chr3 92440907 92441239 -125595919 - L1PB2 LINE L1 -363 5788 5465 1344 252 87 16 chr3 92442901 92443326 -125593832 - MER39 LTR ERV1 -20 687 233 298 200 67 13 chr3 92443777 92443852 -125593306 + MIR SINE MIR 68 146 -116 21 71 0 0 chr3 92443992 92444034 -125593124 + AT_rich Low_complexity Low_complexity 1 42 0 27 49 0 0 chr3 92444219 92444260 -125592898 + AT_rich Low_complexity Low_complexity 1 41 0 567 275 195 0 chr3 92444399 92444599 -125592559 + MIR SINE MIR 3 241 -21 191 280 88 32 chr3 92444964 92445089 -125592069 - L2 LINE L2 -3 3310 3179 285 229 16 16 chr3 92445941 92446063 -125591095 + GA-rich Low_complexity Low_complexity 1 122 0 184 342 162 0 chr3 92446354 92446465 -125590693 - L3b LINE CR1 -32 1551 1423 3093 140 4 4 chr3 92447271 92447757 -125589401 - MER66B LTR ERV1 0 486 1 200 197 167 0 chr3 92447822 92447888 -125589270 - MIR SINE MIR -62 200 124 295 232 21 42 chr3 92448351 92448446 -125588712 + (CATATA)n Simple_repeat Simple_repeat 6 98 0 21 36 0 0 chr3 92449250 92449278 -125587880 + AT_rich Low_complexity Low_complexity 1 28 0 234 317 82 50 chr3 92451115 92451418 -125585740 + L1ME1 LINE L1 18 330 -6210 232 281 101 34 chr3 92451718 92451956 -125585202 + L1ME1 LINE L1 702 955 -5575 708 292 54 56 chr3 92452032 92452570 -125584588 + L1ME1 LINE L1 934 1468 -5064 2405 261 92 13 chr3 92452584 92453566 -125583592 + L1ME1 LINE L1 4490 5548 -992 2023 277 56 11 chr3 92453634 92454276 -125582882 + L1ME1 LINE L1 5870 6540 -20 254 361 62 23 chr3 92454344 92454474 -125582684 - L2 LINE L2 0 3272 3138 1962 72 4 0 chr3 92454662 92454912 -125582246 - AluSc SINE Alu -2 307 57 231 146 0 0 chr3 92454961 92455002 -125582156 + (TA)n Simple_repeat Simple_repeat 2 42 0 23 0 0 0 chr3 92456579 92456602 -125580556 + AT_rich Low_complexity Low_complexity 1 23 0 238 328 109 0 chr3 92457140 92457277 -125579881 + MIR SINE MIR 3 154 -54 24 0 0 0 chr3 92457592 92457616 -125579542 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr3 92457758 92457787 -125579371 + AT_rich Low_complexity Low_complexity 1 29 0 213 94 0 0 chr3 92457915 92457947 -125579211 + (GGA)n Simple_repeat Simple_repeat 2 33 0 1339 189 38 17 chr3 92458352 92458643 -125578515 + MLT2D LTR ERVL 1 297 -117 516 273 70 75 chr3 92458693 92459081 -125578077 + L1ME LINE L1 791 1176 -4943 22 0 0 0 chr3 92459534 92459556 -125577602 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 92460551 92460573 -125576585 + AT_rich Low_complexity Low_complexity 1 22 0 1457 271 38 24 chr3 92460676 92461174 -125575984 + MLT1D LTR MaLR 1 505 0 207 232 18 18 chr3 92461532 92461588 -125575570 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 323 333 60 25 chr3 92461941 92462142 -125575016 + L1ME3A LINE L1 5718 5925 -245 388 288 88 19 chr3 92462233 92462393 -125574765 - L2 LINE L2 -4 3309 3139 25 31 0 0 chr3 92462627 92462659 -125574499 + AT_rich Low_complexity Low_complexity 1 32 0 23 68 0 0 chr3 92462710 92462754 -125574404 + AT_rich Low_complexity Low_complexity 1 44 0 639 313 71 18 chr3 92462808 92463242 -125573916 + L1ME4a LINE L1 5585 6041 -80 3651 311 119 24 chr3 92463376 92465443 -125571715 + L2 LINE L2 1062 3313 0 1877 59 30 4 chr3 92465614 92465884 -125571274 + AluY SINE Alu 1 277 -34 2327 84 0 3 chr3 92516791 92517099 -125520059 + AluY SINE Alu 5 311 0 1932 117 0 0 chr3 92517365 92517621 -125519537 - AluSx SINE Alu -56 256 1 707 256 67 22 chr3 92517621 92517980 -125519178 + L1ME LINE L1 2152 2526 -3603 242 337 0 0 chr3 92518008 92518100 -125519058 - MER34 LTR ERV1 -446 96 5 761 250 30 43 chr3 92518104 92518408 -125518750 + L1ME LINE L1 4422 4721 -1408 1253 40 0 0 chr3 92518900 92519049 -125518109 + AluY SINE Alu 158 306 -5 9652 25 0 0 chr3 92520561 92521957 -125515201 + L1P1 LINE L1 4242 5638 -517 489 179 51 0 chr3 92522059 92522176 -125514982 + L1PA11 LINE L1 6046 6168 -6 279 374 48 0 chr3 92522179 92522345 -125514813 - MIR SINE MIR -83 179 6 323 297 94 12 chr3 92522449 92522705 -125514453 + L1ME LINE L1 5496 5772 -332 21 36 0 0 chr3 92522782 92522810 -125514348 + AT_rich Low_complexity Low_complexity 1 28 0 509 319 36 36 chr3 92523080 92523331 -125513827 - MIR SINE MIR -5 257 7 1795 32 0 5 chr3 92524519 92524740 -125512418 + L1PA4 LINE L1 5936 6155 0 282 160 0 0 chr3 92527181 92527231 -125509927 + (TA)n Simple_repeat Simple_repeat 1 50 0 21 0 0 0 chr3 92527414 92527435 -125509723 + AT_rich Low_complexity Low_complexity 1 21 0 1407 210 13 3 chr3 92527486 92527795 -125509363 + AluJb SINE Alu 1 312 0 22 0 0 0 chr3 92527892 92527914 -125509244 + AT_rich Low_complexity Low_complexity 1 22 0 879 0 0 0 chr3 92527920 92528018 -125509140 - L1PA2 LINE L1 -6 6149 6052 297 0 0 0 chr3 92528118 92528151 -125509007 + (CA)n Simple_repeat Simple_repeat 2 34 0 201 94 0 0 chr3 92528231 92528263 -125508895 + (TC)n Simple_repeat Simple_repeat 1 32 0 2322 135 20 0 chr3 92529016 92529371 -125507787 + THE1B LTR MaLR 1 362 -2 1851 230 45 38 chr3 92529620 92529648 -125507510 - MLT2B1 LTR ERVL -11 509 483 183 42 0 0 chr3 92529648 92529672 -125507486 + (GA)n Simple_repeat Simple_repeat 1 24 0 1851 230 45 38 chr3 92529672 92530148 -125507010 - MLT2B1 LTR ERVL -37 483 1 2264 145 41 23 chr3 92531330 92531772 -125505386 + LTR7 LTR ERV1 1 450 0 266 355 26 26 chr3 92531931 92532083 -125505075 - LTR47B-int LTR ERVL -5149 194 43 1265 281 60 14 chr3 92532133 92532553 -125504605 - LTR47B LTR ERVL -4 439 1 2155 71 0 0 chr3 92532580 92532846 -125504312 + AluY SINE Alu 1 266 -45 413 267 92 36 chr3 92533027 92533222 -125503936 - LTR34 LTR ERV1 -177 522 317 822 236 11 11 chr3 92535143 92535317 -125501841 + MER45 DNA AcHobo 6 179 -774 333 228 102 35 chr3 92535524 92535738 -125501420 + MER45C DNA AcHobo 701 953 0 22 56 0 0 chr3 92536258 92536294 -125500864 + AT_rich Low_complexity Low_complexity 1 36 0 21 82 0 0 chr3 92536905 92536954 -125500204 + AT_rich Low_complexity Low_complexity 1 49 0 1316 218 100 43 chr3 92537064 92537435 -125499723 - MER21B LTR ERV1 -11 852 461 3181 89 11 6 chr3 92537436 92538094 -125499064 + L1PA8A LINE L1 5023 5685 -446 * 3334 87 22 0 chr3 92538063 92538525 -125498633 + L1PA8A LINE L1 5544 6015 -116 625 155 10 10 chr3 92538641 92538744 -125498414 - FLAM_C SINE Alu -38 105 3 5814 148 3 4 chr3 92540518 92541514 -125495644 + L1P LINE L1 3031 4025 -2121 763 289 29 26 chr3 92541628 92541978 -125495180 + L1ME1 LINE L1 5811 6161 -5 880 293 149 30 chr3 92542452 92543002 -125494156 + MLT1G LTR MaLR 1 590 0 461 104 13 0 chr3 92544656 92544733 -125492425 + (CA)n Simple_repeat Simple_repeat 1 78 0 24 0 0 0 chr3 92546161 92546185 -125490973 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 92546505 92546526 -125490632 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 92547234 92547255 -125489903 + AT_rich Low_complexity Low_complexity 1 21 0 241 314 137 10 chr3 92547482 92547584 -125489574 - L2 LINE L2 -1 3271 3157 2371 186 70 6 chr3 92548598 92549114 -125488044 + LTR49 LTR ERV1 3 551 -44 491 352 25 25 chr3 92549359 92549558 -125487600 - MIR SINE MIR -59 203 5 331 262 116 30 chr3 92549529 92549693 -125487465 - MIR SINE MIR -38 224 47 * 1062 233 157 16 chr3 92550149 92550526 -125486632 - LTR47B LTR ERVL -1 442 13 284 175 0 48 chr3 92550548 92550611 -125486547 - PABL_B-int LTR ERV1 -4089 4031 3972 462 320 0 26 chr3 92550913 92551066 -125486092 - PABL_B-int LTR ERV1 -1341 5781 5633 25 0 0 0 chr3 92551551 92551576 -125485582 + AT_rich Low_complexity Low_complexity 1 25 0 616 199 44 7 chr3 92551577 92551713 -125485445 - FRAM SINE Alu -24 152 12 885 334 41 8 chr3 92551908 92552273 -125484885 + LTR57-int LTR ERVL 1852 2228 -3115 2051 132 32 51 chr3 92552300 92552597 -125484561 + THE1B LTR MaLR 1 291 -73 1988 149 3 28 chr3 92552597 92552918 -125484240 - AluSq SINE Alu 0 313 1 2051 132 32 51 chr3 92552918 92552991 -125484167 + THE1B LTR MaLR 291 364 0 11155 108 8 1 chr3 92552993 92554560 -125482598 + THE1B-int LTR MaLR 3 1580 0 1920 158 35 41 chr3 92554560 92554926 -125482232 + THE1B LTR MaLR 1 364 0 306 219 123 14 chr3 92555076 92555149 -125482009 + MLT2B1 LTR ERVL 409 535 -19 267 229 0 20 chr3 92555212 92555365 -125481793 + (TA)n Simple_repeat Simple_repeat 1 150 0 31 0 0 0 chr3 92556134 92556165 -125480993 + AT_rich Low_complexity Low_complexity 1 31 0 233 156 0 0 chr3 92556219 92556283 -125480875 + Tigger3(Golem) DNA MER2_type 2497 2560 -469 182 125 31 31 chr3 92556665 92556729 -125480429 + (TA)n Simple_repeat Simple_repeat 2 65 0 5571 151 86 5 chr3 92556776 92557904 -125479254 + Tigger3b DNA MER2_type 2 1231 0 1164 253 66 13 chr3 92557904 92558208 -125478950 - ERVL LTR ERVL -1360 4404 4085 4940 31 1 2 chr3 92558337 92559189 -125477969 - L1PA4 LINE L1 -317 5838 4988 * 9741 49 7 7 chr3 92559185 92559541 -125477617 + L1P LINE L1 3758 4112 -2034 7833 95 3 1 chr3 92559541 92560610 -125476548 + MER11C LTR ERVK 1 1071 0 9741 49 7 7 chr3 92560610 92561493 -125475665 + L1P LINE L1 4112 4998 -1148 2124 201 36 0 chr3 92561493 92561906 -125475252 - ERVL LTR ERVL -1711 4053 3626 9405 204 30 5 chr3 92562010 92563798 -125473360 - ERVL LTR ERVL -2119 3645 1813 728 291 31 5 chr3 92563829 92564052 -125473106 + MLT1D LTR MaLR 277 505 0 382 283 0 0 chr3 92564052 92564158 -125473000 + L1ME1 LINE L1 6014 6119 -47 18942 70 1 7 chr3 92564562 92567051 -125470107 - L1P LINE L1 -3671 2475 1 257 402 33 0 chr3 92567253 92567375 -125469783 + MIR SINE MIR 49 174 -88 2047 113 33 0 chr3 92567997 92568298 -125468860 + L1PA8 LINE L1 5854 6164 -8 21 36 0 0 chr3 92568954 92568982 -125468176 + AT_rich Low_complexity Low_complexity 1 28 0 523 250 15 8 chr3 92569348 92569480 -125467678 - MIR SINE MIR -57 205 73 1453 258 28 19 chr3 92569987 92570347 -125466811 + MLT1A2 LTR MaLR 1 363 -11 205 340 80 53 chr3 92570757 92570945 -125466213 - L2 LINE L2 -198 3074 2882 358 378 0 7 chr3 92571082 92571230 -125465928 - L2 LINE L2 -615 2699 2553 207 254 34 34 chr3 92571567 92571626 -125465532 - MIR SINE MIR -133 75 17 181 358 90 0 chr3 92571687 92571754 -125465404 + MIR SINE MIR 40 112 -150 23 33 0 0 chr3 92572192 92572222 -125464936 + AT_rich Low_complexity Low_complexity 1 30 0 1990 113 0 3 chr3 92572552 92572863 -125464295 + AluSx SINE Alu 1 310 0 1006 159 25 0 chr3 92572864 92573021 -125464137 + AluSg/x SINE Alu 133 293 -17 25 0 0 0 chr3 92573021 92573046 -125464112 + AT_rich Low_complexity Low_complexity 1 25 0 1780 117 89 7 chr3 92574250 92574558 -125462600 + AluSp SINE Alu 1 313 0 983 231 34 63 chr3 92575784 92576165 -125460993 - L1MA9 LINE L1 -32 6280 5911 499 212 0 0 chr3 92576167 92576271 -125460887 + L1MA9 LINE L1 5777 5880 -283 2103 119 0 30 chr3 92576608 92576911 -125460247 + AluSx SINE Alu 1 294 -18 7696 36 0 0 chr3 92576915 92577852 -125459306 - L1P LINE L1 -2002 4144 3208 22103 42 7 0 chr3 92579266 92582815 -125454343 + L1PA4 LINE L1 2581 6155 0 322 329 30 30 chr3 92582879 92583043 -125454115 - L3 LINE CR1 -1267 310 147 494 319 51 28 chr3 92583332 92583586 -125453572 - MIR SINE MIR 0 262 3 902 218 21 10 chr3 92584058 92584251 -125452907 + MER20 DNA MER1_type 25 219 0 198 220 0 0 chr3 92585810 92585869 -125451289 + (TATATG)n Simple_repeat Simple_repeat 5 63 0 206 198 47 35 chr3 92586096 92586182 -125450976 + (TTAAA)n Simple_repeat Simple_repeat 4 90 0 1000 139 0 109 chr3 92586793 92586844 -125450314 - MSTA LTR MaLR 0 428 373 2181 59 48 0 chr3 92586844 92587155 -125450003 - AluY SINE Alu 0 324 1 1000 139 0 109 chr3 92587155 92587303 -125449855 - MSTA LTR MaLR -55 373 250 242 59 29 0 chr3 92587414 92587448 -125449710 - MSTA LTR MaLR -393 35 1 8307 183 30 7 chr3 92587448 92589062 -125448096 - MSTA-int LTR MaLR 0 1651 1 2400 133 40 21 chr3 92589062 92589482 -125447676 - MSTA LTR MaLR 0 428 1 21 36 0 0 chr3 92589862 92589890 -125447268 + AT_rich Low_complexity Low_complexity 1 28 0 249 233 0 50 chr3 92591459 92591485 -125445673 - MER21B LTR ERV1 -769 94 68 1700 199 42 6 chr3 92591485 92591821 -125445337 + MER7A DNA MER2_type 1 346 0 249 233 0 50 chr3 92591821 92591854 -125445304 - MER21B LTR ERV1 -795 68 38 248 208 0 97 chr3 92591913 92591985 -125445173 - MER21B LTR ERV1 -798 65 1 192 300 43 0 chr3 92592439 92592509 -125444649 + MIR SINE MIR 164 236 -26 317 318 62 8 chr3 92592597 92592726 -125444432 - LTR16A1 LTR ERVL -14 443 308 214 117 67 33 chr3 92592764 92592824 -125444334 + T-rich Low_complexity Low_complexity 6 67 0 33 25 0 0 chr3 92592840 92592880 -125444278 + AT_rich Low_complexity Low_complexity 1 40 0 223 184 23 0 chr3 92592894 92592981 -125444177 + (TA)n Simple_repeat Simple_repeat 2 90 0 26 50 0 0 chr3 92593657 92593697 -125443461 + AT_rich Low_complexity Low_complexity 1 40 0 1797 149 62 0 chr3 92593810 92594099 -125443059 - AluSx SINE Alu -5 307 1 416 211 19 39 chr3 92594508 92594612 -125442546 + MER103 DNA DNA 18 119 -47 74 57 0 0 chr3 92597107 92597230 -125439928 + AT_rich Low_complexity Low_complexity 1 123 0 342 343 105 60 chr3 92600958 92601500 -125435658 + L2 LINE L2 2631 3184 -129 453 294 12 31 chr3 92601526 92601689 -125435469 + L2 LINE L2 3146 3305 -8 276 110 27 55 chr3 92601751 92601824 -125435334 + (CATATA)n Simple_repeat Simple_repeat 4 74 0 444 302 29 0 chr3 92601943 92602082 -125435076 - MIR SINE MIR -44 218 76 25 0 0 0 chr3 92602183 92602208 -125434950 + AT_rich Low_complexity Low_complexity 1 25 0 1145 191 0 15 chr3 92603272 92603476 -125433682 - MLT1A1 LTR MaLR 0 365 165 1207 132 5 0 chr3 92603503 92603693 -125433465 - AluSg/x SINE Alu 0 312 122 931 135 0 7 chr3 92603693 92603834 -125433324 - MLT1A1 LTR MaLR -225 140 1 367 284 178 43 chr3 92606396 92606604 -125430554 - MIR SINE MIR -1 261 26 24 53 0 0 chr3 92606671 92606709 -125430449 + AT_rich Low_complexity Low_complexity 1 38 0 41 93 0 0 chr3 92606740 92606858 -125430300 + AT_rich Low_complexity Low_complexity 1 118 0 2136 133 0 0 chr3 92606861 92607163 -125429995 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr3 92608602 92608623 -125428535 + AT_rich Low_complexity Low_complexity 1 21 0 538 121 0 22 chr3 92608629 92608720 -125428438 + THE1B LTR MaLR 276 364 0 22 0 0 0 chr3 92608730 92608752 -125428406 + AT_rich Low_complexity Low_complexity 1 22 0 2044 121 0 0 chr3 92608752 92609061 -125428097 + AluSg SINE Alu 1 309 0 22 80 0 0 chr3 92609069 92609119 -125428039 + AT_rich Low_complexity Low_complexity 1 50 0 439 292 55 47 chr3 92609803 92610192 -125426966 + L1ME LINE L1 5299 5697 -424 1726 101 0 71 chr3 92610546 92610842 -125426316 + AluSq SINE Alu 1 275 -38 226 281 78 23 chr3 92610988 92611116 -125426042 - MLT1J1 LTR MaLR -311 135 1 4786 39 2 2 chr3 92612116 92612700 -125424458 - L1PA5 LINE L1 -7 6147 5564 765 37 0 3 chr3 92612700 92612798 -125424360 + L1P2 LINE L1 5387 5479 -676 210 118 0 0 chr3 92614894 92614928 -125422230 + (TG)n Simple_repeat Simple_repeat 2 35 0 189 132 0 0 chr3 92617022 92617060 -125420098 + (A)n Simple_repeat Simple_repeat 1 38 0 24 53 0 0 chr3 92619078 92619116 -125418042 + AT_rich Low_complexity Low_complexity 1 38 0 1296 140 176 4 chr3 92620184 92620434 -125416724 - AluSx SINE Alu -10 302 10 320 228 9 0 chr3 92620537 92620651 -125416507 + (TA)n Simple_repeat Simple_repeat 1 115 0 298 342 120 70 chr3 92620697 92621216 -125415942 - L2 LINE L2 0 3272 2733 196 158 0 0 chr3 92621715 92621753 -125415405 + L2 LINE L2 3276 3313 0 827 350 83 19 chr3 92621798 92622516 -125414642 - L2 LINE L2 0 3313 2560 654 188 24 88 chr3 92622516 92622686 -125414472 - MSTB1 LTR MaLR 0 432 274 * 1162 73 7 0 chr3 92622681 92622832 -125414326 - THE1A LTR MaLR -201 154 3 10495 124 11 4 chr3 92622834 92624403 -125412755 - THE1A-int LTR MaLR 0 1580 1 1587 141 8 0 chr3 92624403 92624651 -125412507 - THE1A LTR MaLR 0 355 106 2276 160 6 3 chr3 92624767 92625130 -125412028 - THE1B LTR MaLR 0 364 1 10534 120 5 27 chr3 92625130 92626746 -125410412 - THE1B-int LTR MaLR 0 1580 1 2488 112 14 8 chr3 92626750 92627107 -125410051 - THE1B LTR MaLR -5 359 1 286 283 71 20 chr3 92627181 92627280 -125409878 - MLT1L LTR MaLR -509 106 3 321 26 0 0 chr3 92627483 92627521 -125409637 + (TG)n Simple_repeat Simple_repeat 1 38 0 1717 183 30 30 chr3 92627522 92627737 -125409421 + THE1C LTR MaLR 15 232 -143 2154 119 3 0 chr3 92627737 92628039 -125409119 + AluY SINE Alu 1 303 -8 1717 183 30 30 chr3 92628039 92628184 -125408974 + THE1C LTR MaLR 231 375 0 3035 70 3 3 chr3 92628769 92629157 -125408001 - LTR2B LTR ERV1 -102 388 1 40851 67 4 1 chr3 92629422 92635553 -125401605 + L1PA5 LINE L1 3 6150 -4 254 331 27 22 chr3 92635758 92635942 -125401216 + HAL1b LINE L1 343 527 -821 282 378 6 18 chr3 92637363 92637527 -125399631 - MIR3 SINE MIR -31 177 16 938 210 0 0 chr3 92639255 92639422 -125397736 + FAM SINE Alu 1 41 -8 231 36 0 0 chr3 92641058 92641086 -125396072 + (TAGA)n Simple_repeat Simple_repeat 1 28 0 25 0 0 0 chr3 92643147 92643172 -125393986 + AT_rich Low_complexity Low_complexity 1 25 0 230 49 0 49 chr3 92643179 92643220 -125393938 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 192 340 0 0 chr3 92646339 92646389 -125390769 - L2 LINE L2 -9 3263 3214 5243 148 6 1 chr3 92646778 92647615 -125389543 - L1PA15 LINE L1 0 6165 5325 181 281 202 0 chr3 92648725 92648814 -125388344 - MIR SINE MIR -109 153 47 * 183 301 43 104 chr3 92648791 92648954 -125388204 + MIR3 SINE MIR 20 172 -36 380 55 18 0 chr3 92649207 92649262 -125387896 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 215 119 51 17 chr3 92649415 92649474 -125387684 + (TA)n Simple_repeat Simple_repeat 1 61 0 209 195 39 13 chr3 92649568 92649645 -125387513 + (TA)n Simple_repeat Simple_repeat 2 80 0 21 57 0 0 chr3 92649928 92649963 -125387195 + AT_rich Low_complexity Low_complexity 1 35 0 1444 205 35 38 chr3 92650508 92650854 -125386304 - MLT1A1 LTR MaLR 0 365 21 28 61 0 0 chr3 92652978 92653027 -125384131 + AT_rich Low_complexity Low_complexity 1 49 0 185 122 36 58 chr3 92653029 92653168 -125383990 + (TATAA)n Simple_repeat Simple_repeat 1 136 0 21 0 0 0 chr3 92654511 92654532 -125382626 + AT_rich Low_complexity Low_complexity 1 21 0 330 349 51 43 chr3 92654555 92654907 -125382251 - LTR33 LTR ERVL -8 513 159 2066 85 7 3 chr3 92655161 92655443 -125381715 + AluSq SINE Alu 1 283 -30 578 263 72 40 chr3 92655546 92655871 -125381287 + MER34 LTR ERV1 170 542 0 27 62 0 0 chr3 92656861 92656909 -125380249 + AT_rich Low_complexity Low_complexity 1 48 0 3060 161 31 7 chr3 92656989 92657529 -125379629 - Tigger1 DNA MER2_type 0 2418 1866 751 197 0 0 chr3 92657529 92657661 -125379497 + FLAM_C SINE Alu 1 132 -11 10153 152 21 10 chr3 92657687 92659380 -125377778 - Tigger1 DNA MER2_type -539 1879 169 1817 142 13 26 chr3 92661956 92662267 -125374891 + AluSx SINE Alu 2 308 -4 647 190 35 0 chr3 92662267 92662441 -125374717 + GA-rich Low_complexity Low_complexity 1 180 0 241 373 49 0 chr3 92663108 92663210 -125373948 - L2 LINE L2 -2 3311 3205 232 316 40 87 chr3 92663264 92663595 -125373563 - L2 LINE L2 -250 3063 2751 2243 32 57 0 chr3 92664440 92664722 -125372436 - AluY SINE Alu -13 298 1 25 31 0 0 chr3 92664974 92665006 -125372152 + GC_rich Low_complexity Low_complexity 1 32 0 23 68 0 0 chr3 92665379 92665423 -125371735 + AT_rich Low_complexity Low_complexity 1 44 0 261 254 0 15 chr3 92665814 92665881 -125371277 + CT-rich Low_complexity Low_complexity 2 67 0 369 268 98 68 chr3 92665978 92666567 -125370591 - L1M4 LINE L1 -2190 3956 3325 257 211 11 42 chr3 92666704 92666799 -125370359 + T-rich Low_complexity Low_complexity 4 95 0 408 141 7 89 chr3 92667522 92667657 -125369501 + L1MA8 LINE L1 6164 6287 -4 22 0 0 0 chr3 92667728 92667750 -125369408 + AT_rich Low_complexity Low_complexity 1 22 0 254 253 0 0 chr3 92668186 92668277 -125368881 - L1MC4 LINE L1 -1338 6704 6614 264 111 0 0 chr3 92668277 92668322 -125368836 + (TA)n Simple_repeat Simple_repeat 1 45 0 2251 107 3 0 chr3 92670372 92670672 -125366486 - AluSx SINE Alu -11 301 1 3980 79 19 40 chr3 92671248 92671860 -125365298 + L1MA1 LINE L1 5691 6291 -11 2021 139 3 0 chr3 92671860 92672161 -125364997 - AluSq SINE Alu -11 302 1 21 36 0 0 chr3 92672170 92672198 -125364960 + AT_rich Low_complexity Low_complexity 1 28 0 706 324 70 0 chr3 92672952 92673193 -125363965 + MER119 DNA MER1_type 9 266 -317 407 280 143 24 chr3 92673504 92673672 -125363486 + MER102b DNA MER1_type 146 333 -8 276 219 26 123 chr3 92673849 92673963 -125363195 - MIR SINE MIR -30 232 130 1423 268 38 33 chr3 92673963 92674389 -125362769 - LTR40a LTR ERVL 0 519 92 220 242 30 133 chr3 92674749 92674861 -125362297 + MER5B DNA MER1_type 69 159 -19 425 151 12 0 chr3 92725075 92725161 -125311997 + CT-rich Low_complexity Low_complexity 4 90 0 1962 157 0 0 chr3 92725902 92726208 -125310950 - AluSx SINE Alu -6 306 1 307 208 0 0 chr3 92726793 92726846 -125310312 - L2 LINE L2 -6 3266 3214 185 389 0 0 chr3 92727401 92727455 -125309703 - L2 LINE L2 -33 3239 3186 4750 82 6 0 chr3 92727918 92728563 -125308595 - L1PA7 LINE L1 0 6154 5506 22 35 0 0 chr3 92730125 92730154 -125307004 + AT_rich Low_complexity Low_complexity 1 29 0 2773 207 89 99 chr3 92731313 92731910 -125305248 + L1MDa LINE L1 1074 1675 -4865 499 196 59 0 chr3 92731910 92732012 -125305146 + MER1B DNA MER1_type 66 173 -124 2773 207 89 99 chr3 92732012 92732654 -125304504 + L1MDa LINE L1 1675 2401 -4139 1706 188 52 69 chr3 92732658 92733079 -125304079 + L1MD2 LINE L1 5913 6326 -33 1605 141 171 7 chr3 92733529 92733834 -125303324 - MSTA LTR MaLR -73 355 1 497 254 35 109 chr3 92733834 92734116 -125303042 - MER21B LTR ERV1 -580 283 23 413 325 25 12 chr3 92734138 92734298 -125302860 - MLT1K LTR MaLR -58 530 369 21 0 0 0 chr3 92734750 92734771 -125302387 + AT_rich Low_complexity Low_complexity 1 21 0 1811 87 0 12 chr3 92736041 92736283 -125300875 + AluY SINE Alu 47 285 -26 21 36 0 0 chr3 92736283 92736311 -125300847 + AT_rich Low_complexity Low_complexity 1 28 0 269 265 24 0 chr3 92736674 92736757 -125300401 + MLT1I LTR MaLR 89 173 -236 23 54 0 0 chr3 92738370 92738407 -125298751 + AT_rich Low_complexity Low_complexity 1 37 0 23 68 0 0 chr3 92738521 92738565 -125298593 + AT_rich Low_complexity Low_complexity 1 44 0 203 204 19 0 chr3 92739079 92739133 -125298025 + (TG)n Simple_repeat Simple_repeat 2 56 0 34 42 0 0 chr3 92739250 92739298 -125297860 + AT_rich Low_complexity Low_complexity 1 48 0 270 358 36 7 chr3 92740670 92740807 -125296351 + MIR3 SINE MIR 36 176 -32 1267 307 57 0 chr3 92741807 92742195 -125294963 + L1MDb LINE L1 56 465 -5944 1911 159 14 40 chr3 92742302 92742648 -125294510 + MER1B DNA MER1_type 1 337 0 1780 232 41 7 chr3 92742666 92743101 -125294057 + L1MDb LINE L1 669 1118 -5291 282 246 18 9 chr3 92743359 92743469 -125293689 + (TA)n Simple_repeat Simple_repeat 2 112 0 211 337 147 11 chr3 92744551 92744646 -125292512 + L2 LINE L2 3198 3305 -8 237 119 0 0 chr3 92744760 92744802 -125292356 + (A)n Simple_repeat Simple_repeat 1 42 0 24 0 0 0 chr3 92745216 92745240 -125291918 + AT_rich Low_complexity Low_complexity 1 24 0 34 0 0 0 chr3 92748471 92748505 -125288653 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr3 92748771 92748793 -125288365 + AT_rich Low_complexity Low_complexity 1 22 0 1862 152 3 10 chr3 92748847 92749143 -125288015 - AluSx SINE Alu -18 294 1 967 235 160 16 chr3 92749290 92749609 -125287549 + MLT1A1 LTR MaLR 1 365 0 202 178 40 10 chr3 92749791 92749892 -125287266 + (TA)n Simple_repeat Simple_repeat 1 104 0 198 0 0 0 chr3 92750799 92750821 -125286337 + (ATG)n Simple_repeat Simple_repeat 3 24 0 667 321 12 29 chr3 92750840 92751086 -125286072 - MIR SINE MIR -13 249 8 2060 158 46 3 chr3 92751205 92751669 -125285489 - L1P4 LINE L1 -730 5435 4959 3768 132 15 5 chr3 92751669 92752280 -125284878 + L1PA13 LINE L1 5543 6163 0 6534 104 12 5 chr3 92752567 92753581 -125283577 - L1P LINE L1 -826 5320 4300 * 7933 76 2 149 chr3 92753578 92755099 -125282059 + L1P LINE L1 3010 4307 -1839 583 133 0 0 chr3 92756926 92757024 -125280134 + AluY SINE Alu 209 306 -5 549 176 0 0 chr3 92757262 92757353 -125279805 - L1M2 LINE L1 -506 5785 5695 5460 18 3 0 chr3 92757461 92758089 -125279069 + L1PA4 LINE L1 5526 6155 0 206 305 191 15 chr3 92758166 92758297 -125278861 - MER91A DNA MER1_type -23 173 20 1933 96 19 67 chr3 92758900 92759213 -125277945 + AluSc SINE Alu 1 298 -11 216 135 0 0 chr3 92759214 92759251 -125277907 + (GGAA)n Simple_repeat Simple_repeat 3 39 0 2209 70 44 0 chr3 92759251 92759549 -125277609 + AluY SINE Alu 1 311 0 2052 116 0 31 chr3 92759558 92759878 -125277280 + AluSg SINE Alu 1 310 0 1494 200 88 19 chr3 92760147 92760512 -125276646 + MLT1B LTR MaLR 1 390 0 201 278 0 42 chr3 92760596 92760668 -125276490 - L2 LINE L2 0 3313 3245 517 221 55 39 chr3 92760772 92760899 -125276259 + FLAM_A SINE Alu 5 133 0 1963 116 12 50 chr3 92761141 92761478 -125275680 - L1PB3 LINE L1 -3 6151 5828 22 0 0 0 chr3 92763399 92763421 -125273737 + AT_rich Low_complexity Low_complexity 1 22 0 526 253 91 45 chr3 92763442 92763640 -125273518 - L2 LINE L2 0 3313 3107 1775 198 22 40 chr3 92763651 92763685 -125273473 - MLT2D LTR ERVL -7 407 374 462 36 0 0 chr3 92763685 92763741 -125273417 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 1775 198 22 40 chr3 92763741 92764111 -125273047 - MLT2D LTR ERVL -40 374 10 21 0 0 0 chr3 92764535 92764556 -125272602 + AT_rich Low_complexity Low_complexity 1 21 0 1722 162 10 10 chr3 92765148 92765450 -125271708 - AluJb SINE Alu -10 302 1 281 250 0 0 chr3 92766141 92766193 -125270965 + MER5B DNA MER1_type 1 52 -126 489 127 0 0 chr3 92766356 92766435 -125270723 + (GGAA)n Simple_repeat Simple_repeat 1 79 0 206 125 0 25 chr3 92766464 92766504 -125270654 + (GGAA)n Simple_repeat Simple_repeat 1 39 0 895 128 0 0 chr3 92766817 92766983 -125270175 + AluSg/x SINE Alu 159 324 0 2104 142 0 0 chr3 92767423 92767733 -125269425 + AluSq SINE Alu 1 310 -3 290 218 0 0 chr3 92767754 92767809 -125269349 + MER3 DNA MER1_type 1 55 -154 447 245 21 28 chr3 92767826 92767969 -125269189 - MER3 DNA MER1_type -27 182 41 943 244 81 78 chr3 92768219 92768678 -125268480 + MER21B LTR ERV1 280 739 -124 267 155 35 17 chr3 92768706 92768764 -125268394 + MLT1K LTR MaLR 527 585 -3 202 200 0 0 chr3 92768886 92768931 -125268227 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 3445 173 82 3 chr3 92769308 92769967 -125267191 + MER50 LTR ERV1 1 711 -23 261 0 0 0 chr3 92771224 92771253 -125265905 + (TG)n Simple_repeat Simple_repeat 1 29 0 202 143 29 0 chr3 92771274 92771309 -125265849 + GA-rich Low_complexity Low_complexity 4 39 0 278 332 99 20 chr3 92771550 92771752 -125265406 + LTR33 LTR ERVL 304 521 0 21 36 0 0 chr3 92775670 92775698 -125261460 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr3 92776406 92776441 -125260717 + AT_rich Low_complexity Low_complexity 1 35 0 1285 167 5 0 chr3 92777932 92778136 -125259022 - AluJo SINE Alu -107 205 1 824 280 66 105 chr3 92778582 92779204 -125257954 + L2 LINE L2 2442 3048 -265 1818 153 25 14 chr3 92779204 92779557 -125257601 - L1MA2 LINE L1 0 6304 5948 824 280 66 105 chr3 92779557 92779799 -125257359 + L2 LINE L2 3048 3298 -15 30 27 0 0 chr3 92779830 92779867 -125257291 + AT_rich Low_complexity Low_complexity 1 37 0 2154 98 3 0 chr3 92782045 92782332 -125254826 - AluSg SINE Alu -22 288 1 2208 94 0 3 chr3 92783293 92783600 -125253558 + AluY SINE Alu 1 306 -5 365 267 31 128 chr3 92784218 92784476 -125252682 + L2 LINE L2 2542 2774 -540 1627 311 138 32 chr3 92784874 92786033 -125251125 + L2 LINE L2 1885 3172 -141 276 30 0 0 chr3 92786139 92786172 -125250986 + (CA)n Simple_repeat Simple_repeat 2 34 0 270 159 56 0 chr3 92786378 92786485 -125250673 + (TA)n Simple_repeat Simple_repeat 2 114 0 380 203 16 16 chr3 92786527 92786655 -125250503 + (TA)n Simple_repeat Simple_repeat 1 128 0 21 36 0 0 chr3 92787009 92787037 -125250121 + AT_rich Low_complexity Low_complexity 1 28 0 784 283 56 0 chr3 92788261 92788494 -125248664 + MIR SINE MIR 16 261 -1 1893 119 16 55 chr3 92788872 92789184 -125247974 - AluSx SINE Alu -12 300 1 1994 128 0 3 chr3 92790662 92790990 -125246168 - AluSx SINE Alu 0 312 1 266 227 40 13 chr3 92792033 92792108 -125245050 - L2 LINE L2 -1363 1951 1875 * 447 394 58 28 chr3 92792106 92792540 -125244618 - L3 LINE CR1 -1096 481 35 34 65 0 0 chr3 92794923 92794985 -125242173 + AT_rich Low_complexity Low_complexity 1 62 0 600 306 99 5 chr3 92795037 92795259 -125241899 - MIR SINE MIR -8 254 12 22 0 0 0 chr3 92795959 92795981 -125241177 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr3 92797198 92797242 -125239916 + AT_rich Low_complexity Low_complexity 1 44 0 248 276 0 0 chr3 92798949 92799007 -125238151 + MER52A LTR ERV1 1 58 -1697 * 2783 185 32 36 chr3 92798993 92799654 -125237504 + MER52A LTR ERV1 879 1457 -65 3914 204 17 5 chr3 92799759 92800511 -125236647 + MER52A LTR ERV1 995 1755 0 564 234 52 68 chr3 92801330 92801638 -125235520 + L1MC5 LINE L1 7086 7388 -573 2199 169 28 25 chr3 92802430 92802863 -125234295 + Tigger2a DNA MER2_type 1 434 0 1369 144 0 10 chr3 92803067 92803313 -125233845 + AluSg/x SINE Alu 85 328 0 22 0 0 0 chr3 92803493 92803515 -125233643 + AT_rich Low_complexity Low_complexity 1 22 0 2076 128 0 7 chr3 92804126 92804432 -125232726 + AluSq SINE Alu 1 304 -9 9890 96 5 0 chr3 92804439 92806687 -125230471 + L1PA7 LINE L1 3884 6153 -1 283 256 33 8 chr3 92807061 92807182 -125229976 + (TA)n Simple_repeat Simple_repeat 1 124 0 1859 47 0 17 chr3 92807466 92807698 -125229460 + AluY SINE Alu 1 228 -83 1377 119 0 158 chr3 92808754 92809116 -125228042 + AluY SINE Alu 1 305 -6 26 82 0 0 chr3 92809337 92809398 -125227760 + AT_rich Low_complexity Low_complexity 1 61 0 276 194 16 16 chr3 92811278 92811340 -125225818 - L3 LINE CR1 -3 1574 1513 224 170 149 75 chr3 92811913 92812007 -125225151 - L2 LINE L2 -328 2985 2885 27 0 0 0 chr3 92815028 92815055 -125222103 + AT_rich Low_complexity Low_complexity 1 27 0 1017 142 0 0 chr3 92815078 92815226 -125221932 + AluJb SINE Alu 140 287 -25 390 354 48 7 chr3 92816778 92816925 -125220233 + MIR SINE MIR 71 223 -39 1835 120 7 33 chr3 92817038 92817339 -125219819 + AluY SINE Alu 1 293 -18 24 0 0 0 chr3 92817339 92817363 -125219795 + AT_rich Low_complexity Low_complexity 1 24 0 1412 196 41 49 chr3 92817499 92817867 -125219291 + MLT1A1 LTR MaLR 1 365 0 273 277 50 33 chr3 92819099 92819267 -125217891 + L1MC5 LINE L1 6634 6735 -1226 363 233 85 117 chr3 92819281 92819658 -125217500 + L1MC5 LINE L1 6814 7178 -783 902 94 11 22 chr3 92820166 92820347 -125216811 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 247 236 0 18 chr3 92821159 92821214 -125215944 - U4 snRNA snRNA -79 66 13 25 31 0 0 chr3 92821335 92821367 -125215791 + AT_rich Low_complexity Low_complexity 1 32 0 27 0 0 0 chr3 92821561 92821588 -125215570 + AT_rich Low_complexity Low_complexity 1 27 0 633 241 126 11 chr3 92822076 92822250 -125214908 - MLT1J LTR MaLR -317 194 1 2317 91 0 13 chr3 92823829 92824136 -125213022 - AluSc SINE Alu -6 303 1 318 50 0 0 chr3 92824783 92824823 -125212335 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 273 29 0 0 chr3 92825056 92825090 -125212068 + (TC)n Simple_repeat Simple_repeat 2 35 0 250 169 24 48 chr3 92825158 92825241 -125211917 + (TA)n Simple_repeat Simple_repeat 2 82 0 34 0 0 0 chr3 92825384 92825418 -125211740 + AT_rich Low_complexity Low_complexity 1 34 0 233 292 14 0 chr3 92825428 92825500 -125211658 - L1ME LINE L1 -406 5758 5686 230 298 39 29 chr3 92826067 92826171 -125210987 + L2 LINE L2 2597 2701 -613 367 300 50 50 chr3 92827229 92827409 -125209749 - MIR SINE MIR -26 236 57 460 256 23 8 chr3 92828733 92828862 -125208296 + MER94 DNA DNA 1 131 -3 23 0 0 0 chr3 92830601 92830624 -125206534 + AT_rich Low_complexity Low_complexity 1 23 0 1718 146 11 0 chr3 92830626 92830949 -125206209 + AluSx SINE Alu 1 326 0 400 149 0 23 chr3 92831132 92831219 -125205939 + (TA)n Simple_repeat Simple_repeat 1 85 0 323 264 0 22 chr3 92831221 92831312 -125205846 - L1MC4 LINE L1 -1339 6703 6615 310 283 0 22 chr3 92831252 92831344 -125205814 + L1MC4 LINE L1 6614 6703 -1339 * 412 290 32 16 chr3 92831700 92831824 -125205334 + MIR SINE MIR 19 144 -64 1359 185 0 40 chr3 92831970 92832246 -125204912 - AluJb SINE Alu -14 298 34 252 86 0 0 chr3 92833654 92833689 -125203469 + (T)n Simple_repeat Simple_repeat 1 35 0 341 256 128 81 chr3 92834638 92835060 -125202098 - MLT1J1 LTR MaLR 0 446 5 186 333 29 48 chr3 92835360 92835465 -125201693 + L2 LINE L2 3165 3267 -46 231 329 0 0 chr3 92836612 92836691 -125200467 + (CATATA)n Simple_repeat Simple_repeat 4 82 0 261 0 0 0 chr3 92837997 92838026 -125199132 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr3 92838104 92838125 -125199033 + AT_rich Low_complexity Low_complexity 1 21 0 1827 145 7 0 chr3 92838905 92839214 -125197944 - AluSx SINE Alu 0 311 1 1846 138 55 28 chr3 92840010 92840371 -125196787 + THE1C LTR MaLR 5 375 0 2466 122 14 0 chr3 92841021 92841389 -125195769 - THE1C LTR MaLR -2 373 1 303 237 141 59 chr3 92842652 92842787 -125194371 + MLT1H LTR MaLR 310 455 -94 23 0 0 0 chr3 92843244 92843267 -125193891 + AT_rich Low_complexity Low_complexity 1 23 0 2110 90 65 3 chr3 92844055 92844345 -125192813 + AluSc SINE Alu 2 309 0 218 250 0 18 chr3 92845694 92845750 -125191408 + (CACG)n Simple_repeat Simple_repeat 1 55 0 465 19 0 0 chr3 92846186 92846240 -125190918 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 2936 193 29 6 chr3 92846359 92847008 -125190150 - L1 LINE L1 -2410 3736 3073 23 54 0 0 chr3 92847835 92847872 -125189286 + AT_rich Low_complexity Low_complexity 1 37 0 1134 235 4 13 chr3 92849120 92849358 -125187800 + MER8 DNA MER2_type 2 237 -2 345 382 80 27 chr3 92849373 92849635 -125187523 + L2 LINE L2 2694 2969 -345 205 343 83 71 chr3 92849690 92849859 -125187299 + L2 LINE L2 3102 3272 0 24 0 0 0 chr3 92850587 92850611 -125186547 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr3 92851376 92851407 -125185751 + AT_rich Low_complexity Low_complexity 1 31 0 581 105 11 0 chr3 92853163 92853258 -125183900 + (GA)n Simple_repeat Simple_repeat 1 96 0 2178 81 3 3 chr3 92853377 92853682 -125183476 - AluY SINE Alu 0 305 1 704 258 52 0 chr3 92855151 92855345 -125181813 + MER63A DNA MER1_type 1 204 -6 23 0 0 0 chr3 92856599 92856622 -125180536 + AT_rich Low_complexity Low_complexity 1 23 0 992 178 0 10 chr3 92856622 92856830 -125180328 - L1MA7 LINE L1 -6 6285 6080 306 260 52 0 chr3 92857577 92857654 -125179504 + MIR SINE MIR 72 152 -56 2188 127 3 0 chr3 92858525 92858833 -125178325 + AluSc SINE Alu 1 309 0 11364 89 10 3 chr3 92858974 92859819 -125177339 - L1PA7 LINE L1 0 6469 5631 180 0 0 0 chr3 92859819 92859839 -125177319 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 11364 89 10 3 chr3 92859839 92861374 -125175784 - L1PA7 LINE L1 -838 5631 4074 8095 117 7 0 chr3 92861374 92862146 -125175012 - L1PA7 LINE L1 -5272 1189 405 243 0 0 0 chr3 92862146 92862173 -125174985 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8095 117 7 0 chr3 92862173 92862576 -125174582 - L1PA7 LINE L1 -6056 405 6 973 306 55 26 chr3 92863193 92863648 -125173510 + L2 LINE L2 2149 2616 -698 21 36 0 0 chr3 92864063 92864091 -125173067 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 92864356 92864378 -125172780 + AT_rich Low_complexity Low_complexity 1 22 0 33 56 0 0 chr3 92864480 92864534 -125172624 + AT_rich Low_complexity Low_complexity 1 54 0 23 33 0 0 chr3 92864551 92864581 -125172577 + AT_rich Low_complexity Low_complexity 1 30 0 218 361 24 12 chr3 92864590 92864673 -125172485 + L2 LINE L2 3137 3220 -52 1879 279 69 59 chr3 92864781 92865581 -125171577 + L2 LINE L2 2236 3057 -256 1448 197 68 29 chr3 92865581 92865932 -125171226 + MLT1A1 LTR MaLR 1 365 0 1879 279 69 59 chr3 92865932 92866192 -125170966 + L2 LINE L2 3057 3313 0 2309 98 7 3 chr3 92866858 92867165 -125169993 + AluSx SINE Alu 1 308 -4 232 268 80 9 chr3 92867224 92867336 -125169822 + L1ME4a LINE L1 5977 6096 -25 766 179 0 0 chr3 92868775 92868909 -125168249 + FRAM SINE Alu 29 162 -14 1272 242 50 21 chr3 92869112 92869451 -125167707 + MLT1A1 LTR MaLR 10 358 -7 2228 89 0 0 chr3 92870463 92870747 -125166411 + AluY SINE Alu 1 287 -24 477 80 34 0 chr3 92870747 92870835 -125166323 + (TA)n Simple_repeat Simple_repeat 2 92 0 4178 62 0 2 chr3 92871607 92872143 -125165015 - L1PA7 LINE L1 -11 6143 5609 201 39 0 0 chr3 92873068 92873094 -125164064 + (TTG)n Simple_repeat Simple_repeat 1 26 0 254 272 0 25 chr3 92873472 92873553 -125163605 - L2 LINE L2 0 3272 3194 295 242 0 0 chr3 92874086 92874148 -125163010 - L2 LINE L2 0 3313 3252 321 364 113 0 chr3 92874467 92874662 -125162496 + L2 LINE L2 2366 2582 -732 2502 51 0 13 chr3 92875758 92876071 -125161087 + AluY SINE Alu 1 309 -2 326 289 142 25 chr3 92877392 92877589 -125159569 + MIR SINE MIR 41 260 -2 22 0 0 0 chr3 92878592 92878614 -125158544 + AT_rich Low_complexity Low_complexity 1 22 0 1480 191 18 7 chr3 92879512 92879795 -125157363 - AluJo SINE Alu -20 292 7 2313 186 16 88 chr3 92880621 92881207 -125155951 + LTR69 LTR ERVL 1 485 -103 1614 179 3 19 chr3 92881207 92881514 -125155644 - AluJo SINE Alu -8 304 3 2313 186 16 88 chr3 92881514 92881612 -125155546 + LTR69 LTR ERVL 485 588 0 22 35 0 0 chr3 92882043 92882072 -125155086 + AT_rich Low_complexity Low_complexity 1 29 0 419 347 10 31 chr3 92882221 92882417 -125154741 - MIR SINE MIR -62 200 9 285 398 72 0 chr3 92884773 92884994 -125152164 + L3 LINE CR1 1313 1549 -28 21 57 0 0 chr3 92885318 92885353 -125151805 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 92885564 92885587 -125151571 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr3 92885886 92885914 -125151244 + AT_rich Low_complexity Low_complexity 1 28 0 343 264 56 69 chr3 92887314 92887458 -125149700 - MER5A DNA MER1_type -4 185 44 273 188 21 0 chr3 92887703 92887751 -125149407 + MER5B DNA MER1_type 7 55 -123 393 255 20 0 chr3 92888012 92888114 -125149044 + MER45A DNA AcHobo 75 178 0 227 322 133 14 chr3 92888115 92888258 -125148900 - MIR SINE MIR -92 170 11 21 0 0 0 chr3 92889000 92889021 -125148137 + AT_rich Low_complexity Low_complexity 1 21 0 306 132 40 0 chr3 92890608 92890684 -125146474 + (TA)n Simple_repeat Simple_repeat 2 80 0 22 0 0 0 chr3 92891238 92891260 -125145898 + AT_rich Low_complexity Low_complexity 1 22 0 1761 168 81 31 chr3 92892363 92892781 -125144377 + L1 LINE L1 4492 4930 -1216 * 8396 188 24 11 chr3 92892771 92893078 -125144080 + L1PA16 LINE L1 3371 3672 -2527 252 0 0 0 chr3 92893078 92893106 -125144052 + (CAA)n Simple_repeat Simple_repeat 3 30 0 8396 188 24 11 chr3 92893106 92895587 -125141571 + L1PA16 LINE L1 3672 6199 0 1522 221 48 10 chr3 92895630 92896029 -125141129 + L1 LINE L1 4906 5319 -827 3403 79 0 0 chr3 92896133 92896578 -125140580 - L1PA7 LINE L1 -106 6048 5604 * 6194 189 39 3 chr3 92896577 92897731 -125139427 + MSTA-int LTR MaLR 451 1646 -5 2267 140 72 5 chr3 92897741 92898142 -125139016 + MSTA LTR MaLR 1 428 0 724 264 54 13 chr3 92898147 92898448 -125138710 + MLT1H1 LTR MaLR 162 524 -31 249 103 0 52 chr3 92899400 92899458 -125137700 + (TA)n Simple_repeat Simple_repeat 1 55 0 2139 236 9 4 chr3 92899940 92900474 -125136684 + L1MA8 LINE L1 4835 5371 -775 271 244 99 15 chr3 92900589 92900755 -125136403 + L1MA8 LINE L1 5890 6068 -223 448 148 37 37 chr3 92900760 92900868 -125136290 + L1MA8 LINE L1 6167 6274 -17 908 106 0 0 chr3 92900927 92901068 -125136090 + L1MA5 LINE L1 6158 6298 -2 209 357 143 18 chr3 92901481 92901593 -125135565 - L2 LINE L2 -6 3266 3141 264 314 40 16 chr3 92902468 92902592 -125134566 + MLT1J2 LTR MaLR 267 393 -57 475 186 20 0 chr3 92904495 92904597 -125132561 + L1PB3 LINE L1 6044 6147 -7 21 36 0 0 chr3 92904659 92904687 -125132471 + AT_rich Low_complexity Low_complexity 1 28 0 463 316 29 7 chr3 92904796 92904935 -125132223 + LTR33 LTR ERVL 56 197 -324 475 292 30 30 chr3 92904957 92905159 -125131999 + LTR33 LTR ERVL 314 515 -6 21 0 0 0 chr3 92905488 92905509 -125131649 + AT_rich Low_complexity Low_complexity 1 21 0 271 317 166 0 chr3 92906076 92906221 -125130937 + MIR SINE MIR 40 208 -54 184 333 60 0 chr3 92906795 92906879 -125130279 + MER5C DNA MER1_type 17 105 -219 2145 125 0 0 chr3 92907745 92908059 -125129099 - AluSx SINE Alu 0 314 1 417 189 233 6 chr3 92908481 92908640 -125128518 + MER5C DNA MER1_type 130 324 0 1663 304 103 25 chr3 92909481 92910622 -125126536 + L2 LINE L2 2084 3313 0 1977 208 48 64 chr3 92910943 92911506 -125125652 + MLT2B3 LTR ERVL 1 554 0 270 0 0 0 chr3 93114295 93114325 -124922833 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 766 275 151 105 chr3 93115917 93116883 -124920275 - L2 LINE L2 -905 2409 1399 1148 246 96 12 chr3 93118150 93118484 -124918674 - L1MC3 LINE L1 -347 7438 7077 387 291 63 1 chr3 93118649 93118775 -124918383 - MIR3 SINE MIR -21 187 55 1122 83 0 0 chr3 93119928 93120072 -124917086 + AluSg/x SINE Alu 154 297 -15 210 266 16 0 chr3 93120105 93120169 -124916989 + (CTA)n Simple_repeat Simple_repeat 3 67 0 248 302 19 38 chr3 93120172 93120278 -124916880 - MIR SINE MIR -1 261 158 235 278 56 44 chr3 93120835 93120898 -124916260 - L2 LINE L2 -1056 2258 2191 2015 117 0 0 chr3 93120898 93121200 -124915958 + AluSg SINE Alu 1 302 0 235 278 56 44 chr3 93121200 93121225 -124915933 - L2 LINE L2 -1123 2191 2168 222 149 21 0 chr3 93121817 93121864 -124915294 + T-rich Low_complexity Low_complexity 2 49 0 3527 155 16 8 chr3 93124108 93124734 -124912424 - L1MA6 LINE L1 -83 6217 5587 1720 194 0 0 chr3 93124811 93125100 -124912058 + AluSx SINE Alu 1 289 -23 185 182 0 0 chr3 93126785 93126818 -124910340 + MIR SINE MIR 7 39 -223 273 287 61 26 chr3 93129119 93129234 -124907924 + MIR3 SINE MIR 73 191 -17 1162 254 33 90 chr3 93129965 93130717 -124906441 - Charlie7 DNA MER1_type -1890 722 14 22 0 0 0 chr3 93133000 93133022 -124904136 + AT_rich Low_complexity Low_complexity 1 22 0 390 297 14 40 chr3 93134869 93135017 -124902141 + MIR SINE MIR 116 259 -3 197 307 50 40 chr3 93136637 93136738 -124900420 - L2 LINE L2 -223 3049 2948 27 29 0 0 chr3 93137179 93137213 -124899945 + AT_rich Low_complexity Low_complexity 1 34 0 208 233 0 0 chr3 93137272 93137315 -124899843 + (ATG)n Simple_repeat Simple_repeat 2 44 0 450 303 97 16 chr3 93137336 93137521 -124899637 - MIR SINE MIR -35 227 28 191 341 0 45 chr3 93137656 93137744 -124899414 - MER5A DNA MER1_type -69 120 37 29 70 0 0 chr3 93138586 93138643 -124898515 + AT_rich Low_complexity Low_complexity 1 57 0 672 143 24 24 chr3 93139305 93139431 -124897727 + MER1B DNA MER1_type 214 339 0 2936 136 45 11 chr3 93139681 93140219 -124896939 - L1MA5A LINE L1 0 6297 5742 308 149 0 0 chr3 93140334 93140381 -124896777 + L1M2 LINE L1 5690 5736 -561 5544 181 38 46 chr3 93140388 93140781 -124896377 - L1MA5A LINE L1 -590 5707 5312 1875 119 34 0 chr3 93140781 93141050 -124896108 - AluSq SINE Alu -19 294 17 5544 181 38 46 chr3 93141050 93141650 -124895508 - L1MA5A LINE L1 -985 5312 4697 279 0 0 0 chr3 93141650 93141681 -124895477 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5544 181 38 46 chr3 93141681 93142251 -124894907 - L1MA5A LINE L1 -1600 4697 4124 13533 186 25 20 chr3 93142281 93147344 -124889814 - L1MA3 LINE L1 0 7724 2647 2460 169 15 10 chr3 93147363 93147772 -124889386 - L1MA3 LINE L1 -7136 429 19 308 217 17 0 chr3 93147961 93148021 -124889137 + L2 LINE L2 3205 3265 -7 21 57 0 0 chr3 93148212 93148247 -124888911 + AT_rich Low_complexity Low_complexity 1 35 0 232 333 0 0 chr3 93148289 93148358 -124888800 - L2 LINE L2 0 3313 3245 228 250 0 57 chr3 93148374 93148462 -124888696 - LTR66 LTR ERVL -148 462 380 343 318 107 46 chr3 93149387 93149667 -124887491 + MER102b DNA MER1_type 1 297 -44 336 48 0 0 chr3 93149896 93149938 -124887220 + (GA)n Simple_repeat Simple_repeat 1 42 0 182 338 65 0 chr3 93150759 93150836 -124886322 - L2 LINE L2 0 3313 3232 673 118 0 0 chr3 93152952 93153054 -124884104 - AluS SINE Alu -211 102 1 324 119 0 0 chr3 93153371 93153430 -124883728 + (TG)n Simple_repeat Simple_repeat 2 60 0 570 246 23 51 chr3 93154061 93154515 -124882643 + L1MD3 LINE L1 5913 7985 -10 3656 201 49 27 chr3 93155672 93155824 -124881334 - L1MB8 LINE L1 -1 6177 6030 1015 182 0 0 chr3 93155824 93155994 -124881164 + FAM SINE Alu 2 171 -4 3656 201 49 27 chr3 93155994 93157323 -124879835 - L1MB8 LINE L1 -148 6030 4641 200 35 35 0 chr3 93157323 93157352 -124879806 + (TCTA)n Simple_repeat Simple_repeat 4 33 0 3656 201 49 27 chr3 93157352 93157533 -124879625 - L1MB8 LINE L1 -1537 4641 4465 1948 148 3 0 chr3 93158587 93158884 -124878274 - AluSx SINE Alu -10 302 5 35 0 0 0 chr3 93159945 93159980 -124877178 + AT_rich Low_complexity Low_complexity 1 35 0 1898 158 69 9 chr3 93161728 93162077 -124875081 - THE1C LTR MaLR -5 370 1 593 266 18 50 chr3 93162369 93162591 -124874567 - MER20 DNA MER1_type -4 215 1 383 344 25 31 chr3 93162758 93162918 -124874240 - MER5A DNA MER1_type -16 173 15 3388 179 63 18 chr3 93163357 93164043 -124873115 + L1MC1 LINE L1 5523 6239 -94 335 383 27 27 chr3 93164206 93164394 -124872764 - MER5A DNA MER1_type 0 189 2 244 329 77 70 chr3 93164472 93164758 -124872400 + L2 LINE L2 2616 2903 -411 593 200 0 0 chr3 93165175 93165285 -124871873 + FLAM_A SINE Alu 1 110 -32 24 0 0 0 chr3 93165299 93165323 -124871835 + AT_rich Low_complexity Low_complexity 1 24 0 247 360 20 0 chr3 93165678 93165828 -124871330 - L1ME LINE L1 -626 5540 5388 2090 285 108 36 chr3 93167001 93168236 -124868922 - L2 LINE L2 0 3313 1982 28 48 0 0 chr3 93169086 93169128 -124868030 + AT_rich Low_complexity Low_complexity 1 42 0 2077 152 24 8 chr3 93169183 93169552 -124867606 - THE1C LTR MaLR 0 375 1 9968 118 30 24 chr3 93169552 93171122 -124866036 - THE1C-int LTR MaLR 0 1580 1 1882 136 82 17 chr3 93171122 93171474 -124865684 - THE1C LTR MaLR 0 375 1 1839 152 10 36 chr3 93171685 93171994 -124865164 - AluSx SINE Alu -11 301 1 224 242 16 65 chr3 93172258 93172320 -124864838 - L2 LINE L2 0 3313 3255 324 282 113 21 chr3 93172456 93172598 -124864560 - L2 LINE L2 -20 3293 3139 496 104 13 0 chr3 93172600 93172677 -124864481 + (TA)n Simple_repeat Simple_repeat 2 79 0 1985 114 14 0 chr3 93172677 93172966 -124864192 - AluSx SINE Alu -19 293 1 538 228 65 60 chr3 93173067 93173251 -124863907 - MIR SINE MIR -52 210 26 295 289 70 33 chr3 93173272 93173515 -124863643 - L2 LINE L2 -343 2970 2708 1960 142 0 16 chr3 93173754 93174070 -124863088 - AluSx SINE Alu -1 311 1 414 284 63 8 chr3 93174082 93174209 -124862949 + L2 LINE L2 3161 3294 -19 370 313 16 31 chr3 93174366 93174494 -124862664 - L2 LINE L2 -5 3308 3183 2472 65 0 3 chr3 93174820 93175129 -124862029 - AluY SINE Alu -3 308 1 21 0 0 0 chr3 93175910 93175931 -124861227 + AT_rich Low_complexity Low_complexity 1 21 0 1137 244 39 13 chr3 93176313 93176625 -124860533 - MER58B DNA MER1_type -15 326 7 207 0 0 0 chr3 93176654 93176677 -124860481 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 273 57 0 0 chr3 93176696 93176731 -124860427 + (TA)n Simple_repeat Simple_repeat 1 35 0 526 28 56 14 chr3 93176731 93176803 -124860355 - L1PA3 LINE L1 -15 6140 6066 195 261 11 98 chr3 93177055 93177147 -124860011 + L3 LINE CR1 774 857 -720 191 285 92 8 chr3 93177113 93177243 -124859915 + MIR SINE MIR 122 262 0 * 521 313 114 23 chr3 93177573 93177924 -124859234 + L3 LINE CR1 1051 1433 -144 1679 91 23 88 chr3 93178048 93178355 -124858803 + L1PB2 LINE L1 5858 6144 -7 25 0 0 0 chr3 93178558 93178583 -124858575 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr3 93179310 93179338 -124857820 + AT_rich Low_complexity Low_complexity 1 28 0 22 80 0 0 chr3 93179601 93179651 -124857507 + AT_rich Low_complexity Low_complexity 1 50 0 329 324 29 20 chr3 93179841 93180041 -124857117 - MIR SINE MIR -32 230 3 279 103 0 0 chr3 93180242 93180281 -124856877 + MADE1 DNA Mariner 42 80 0 6138 89 17 19 chr3 93180400 93181396 -124855762 - MER11C LTR ERVK 0 1071 1 259 360 58 42 chr3 93181886 93182264 -124854894 + L2 LINE L2 2521 2904 -410 255 211 0 0 chr3 93182608 93182660 -124854498 + L2 LINE L2 3221 3272 0 2262 118 0 0 chr3 93183535 93183841 -124853317 + AluSg SINE Alu 1 306 -4 28 71 0 0 chr3 93183864 93183920 -124853238 + AT_rich Low_complexity Low_complexity 1 56 0 209 286 0 0 chr3 93184843 93184892 -124852266 + MER5A DNA MER1_type 1 49 -140 364 223 107 0 chr3 93185106 93185209 -124851949 + MER3 DNA MER1_type 92 205 -4 285 291 50 70 chr3 93186640 93186881 -124850277 + L2 LINE L2 3078 3313 0 194 372 26 13 chr3 93187175 93187253 -124849905 - MIR SINE MIR -156 106 28 182 394 40 0 chr3 93187635 93187734 -124849424 - L2 LINE L2 -9 3263 3161 321 363 31 12 chr3 93188228 93188388 -124848770 - L2 LINE L2 -721 2593 2431 1420 191 44 17 chr3 93188594 93188888 -124848270 - AluJo SINE Alu -10 302 1 482 390 70 13 chr3 93188889 93189286 -124847872 - L2 LINE L2 -1721 1593 1174 22 35 0 0 chr3 93189484 93189513 -124847645 + AT_rich Low_complexity Low_complexity 1 29 0 210 186 23 0 chr3 93190120 93190163 -124846995 + T-rich Low_complexity Low_complexity 2 45 0 204 235 20 0 chr3 93191834 93191885 -124845273 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 244 254 0 0 chr3 93192123 93192178 -124844980 + (TA)n Simple_repeat Simple_repeat 2 56 0 670 200 35 0 chr3 93192477 93192622 -124844536 - L1 LINE L1 -792 5354 5205 * 1292 110 12 75 chr3 93192621 93192815 -124844343 + L1MA1 LINE L1 5959 6135 -167 1449 201 34 17 chr3 93192815 93193109 -124844049 + AluJb SINE Alu 1 299 -13 1292 110 12 75 chr3 93193109 93193168 -124843990 + L1MA1 LINE L1 6135 6196 -106 270 321 14 60 chr3 93194497 93194649 -124842509 + MIR SINE MIR 54 197 -61 232 291 61 100 chr3 93195228 93195458 -124841700 - L3 LINE CR1 -695 882 662 229 304 18 0 chr3 93195471 93195527 -124841631 - L2 LINE L2 -697 2617 2561 1248 265 104 54 chr3 93196074 93196154 -124841004 - MLT1H LTR MaLR -2 547 472 2273 100 0 0 chr3 93196154 93196463 -124840695 - AluSc SINE Alu 0 309 1 1248 265 104 54 chr3 93196463 93196903 -124840255 - MLT1H LTR MaLR -77 472 1 617 299 23 6 chr3 93197608 93197785 -124839373 - MER5A DNA MER1_type -9 180 1 260 241 119 25 chr3 93198581 93198709 -124838449 - MIR SINE MIR -63 145 20 390 114 0 0 chr3 93199315 93199385 -124837773 + (GA)n Simple_repeat Simple_repeat 2 71 0 21 36 0 0 chr3 93200524 93200552 -124836606 + AT_rich Low_complexity Low_complexity 1 28 0 2397 119 31 0 chr3 93200762 93201115 -124836043 - THE1B LTR MaLR 0 364 1 244 302 10 42 chr3 93201596 93201692 -124835466 - MIR SINE MIR -138 124 32 180 402 0 11 chr3 93201695 93201787 -124835371 + MIR SINE MIR 51 141 -121 203 316 0 0 chr3 93202505 93202562 -124834596 + L2 LINE L2 3257 3313 0 21 0 0 0 chr3 93203952 93203973 -124833185 + AT_rich Low_complexity Low_complexity 1 21 0 275 246 0 0 chr3 93204435 93204492 -124832666 - MLT1A2 LTR MaLR -7 367 311 480 217 9 0 chr3 93204522 93204637 -124832521 + L1PA16 LINE L1 6047 6162 -4 625 184 14 82 chr3 93204772 93204933 -124832225 - MLT1A2 LTR MaLR -56 318 181 2274 97 0 13 chr3 93205031 93205339 -124831819 + AluSc SINE Alu 1 304 -5 2158 132 9 20 chr3 93205347 93205688 -124831470 + MER1B DNA MER1_type 1 337 0 500 297 14 20 chr3 93205692 93205840 -124831318 - MLT1A2 LTR MaLR -223 151 5 286 57 0 0 chr3 93206252 93206287 -124830871 + L1P2 LINE L1 5554 5588 -566 314 118 0 53 chr3 93206388 93206464 -124830694 + L1PA3 LINE L1 6078 6149 -6 21 57 0 0 chr3 93206465 93206500 -124830658 + AT_rich Low_complexity Low_complexity 1 35 0 198 314 32 64 chr3 93206573 93206729 -124830429 + MIR SINE MIR 57 207 -55 1544 166 14 17 chr3 93206765 93207054 -124830104 - AluJb SINE Alu -16 296 9 1835 146 31 0 chr3 93208474 93208761 -124828397 + AluSx SINE Alu 8 303 -9 211 362 172 35 chr3 93208771 93208887 -124828271 - L2 LINE L2 0 3272 3141 187 367 0 0 chr3 93209064 93209124 -124828034 - MIR SINE MIR -105 157 98 235 250 14 56 chr3 93210008 93210080 -124827078 - L2 LINE L2 0 3272 3204 398 264 74 47 chr3 93210491 93210639 -124826519 - MIR SINE MIR -82 180 29 2609 27 0 0 chr3 93210787 93211084 -124826074 - AluY SINE Alu -14 297 1 235 170 0 0 chr3 93212420 93212467 -124824691 - LTR66 LTR ERVL -171 439 393 2102 74 7 4 chr3 93212488 93212758 -124824400 - AluY SINE Alu -20 291 21 215 317 0 42 chr3 93212924 93213066 -124824092 + (TATG)n Simple_repeat Simple_repeat 1 136 0 250 284 75 0 chr3 93214940 93215007 -124822151 + MIR SINE MIR 191 262 0 1273 202 15 89 chr3 93215658 93215739 -124821419 + MLT1A1 LTR MaLR 4 89 -276 1541 164 4 8 chr3 93215739 93215989 -124821169 + AluJb SINE Alu 30 278 -34 1273 202 15 89 chr3 93215989 93216298 -124820860 + MLT1A1 LTR MaLR 89 365 0 982 176 146 18 chr3 93217062 93217206 -124819952 + MER33 DNA MER1_type 1 116 -2469 906 189 0 0 chr3 93217206 93217365 -124819793 + L1PB4 LINE L1 5996 6154 -2 982 176 146 18 chr3 93217365 93217495 -124819663 + MER33 DNA MER1_type 116 302 -22 201 255 0 0 chr3 93217567 93217618 -124819540 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 197 267 67 33 chr3 93217793 93217853 -124819305 - MIR SINE MIR -198 64 3 1118 162 105 128 chr3 93218038 93218420 -124818738 + MLT2D LTR ERVL 2 374 -40 263 288 27 9 chr3 93218427 93218538 -124818620 + (TATATG)n Simple_repeat Simple_repeat 4 116 0 25 31 0 0 chr3 93218791 93218823 -124818335 + AT_rich Low_complexity Low_complexity 1 32 0 1979 271 117 107 chr3 93219608 93221049 -124816109 + L2 LINE L2 1233 2693 -621 703 206 0 0 chr3 93221049 93221180 -124815978 - FLAM_C SINE Alu -2 131 1 1979 271 117 107 chr3 93221180 93221334 -124815824 + L2 LINE L2 2693 2844 -470 276 283 21 112 chr3 93221506 93221693 -124815465 + L2 LINE L2 3143 3312 -1 2714 88 8 3 chr3 93221709 93222082 -124815076 - THE1C LTR MaLR 0 375 1 1359 81 0 0 chr3 93223138 93223311 -124813847 - AluY SINE Alu -13 298 126 213 122 0 61 chr3 93223414 93223463 -124813695 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 184 344 0 0 chr3 93223841 93223902 -124813256 - L2 LINE L2 -4 3309 3249 255 318 52 47 chr3 93223931 93224123 -124813035 - L2 LINE L2 -124 3189 2997 * 372 367 0 0 chr3 93224117 93224245 -124812913 - L2 LINE L2 -685 2629 2502 282 366 43 11 chr3 93224366 93224552 -124812606 - L2 LINE L2 -1022 2292 2101 232 262 84 56 chr3 93224549 93224656 -124812502 + MIR SINE MIR 153 262 0 * 23 33 0 0 chr3 93225554 93225584 -124811574 + AT_rich Low_complexity Low_complexity 1 30 0 885 150 80 5 chr3 93225584 93225771 -124811387 - L1MA4 LINE L1 -15 6285 6085 215 0 67 0 chr3 93226702 93226732 -124810426 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1433 162 0 115 chr3 93226735 93227056 -124810102 - AluJb SINE Alu -28 284 1 327 308 163 2 chr3 93227640 93227875 -124809283 + L2 LINE L2 2990 3313 0 23 0 0 0 chr3 93228721 93228744 -124808414 + AT_rich Low_complexity Low_complexity 1 23 0 200 270 63 0 chr3 93230585 93230648 -124806510 + MIR SINE MIR 66 132 -130 2250 109 0 0 chr3 93230830 93231133 -124806025 - AluSq SINE Alu -5 308 6 347 260 117 7 chr3 93231287 93231441 -124805717 + L1ME LINE L1 5448 5618 -548 448 126 180 36 chr3 93231542 93231653 -124805505 + L1MA8 LINE L1 5900 6026 -265 620 140 35 9 chr3 93231674 93231788 -124805370 - L1MA6 LINE L1 -426 5874 5758 1310 179 11 18 chr3 93231788 93231938 -124805220 + L1MA8 LINE L1 6011 6168 -123 2173 112 3 0 chr3 93231938 93232243 -124804915 + AluSx SINE Alu 1 306 -6 1310 179 11 18 chr3 93232243 93232364 -124804794 + L1MA8 LINE L1 6168 6288 -3 1215 132 47 5 chr3 93234056 93234269 -124802889 - pTR5 LTR ERV1 -2046 392 171 324 194 41 31 chr3 93234271 93234369 -124802789 - LTR30 LTR ERV1 -80 642 544 4154 126 65 67 chr3 93234369 93235366 -124801792 - pTR5 LTR ERV1 -413 2025 741 21 0 0 0 chr3 93235740 93235761 -124801397 + AT_rich Low_complexity Low_complexity 1 21 0 301 328 76 0 chr3 93236035 93236154 -124801004 - MIR SINE MIR -115 147 20 21 0 0 0 chr3 93236685 93236706 -124800452 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr3 93239427 93239456 -124797702 + AT_rich Low_complexity Low_complexity 1 29 0 6997 58 9 18 chr3 93239795 93241316 -124795842 - L1PA7 LINE L1 -1 6153 4639 2795 16 0 0 chr3 93241316 93241627 -124795531 - AluY SINE Alu 0 311 1 6997 58 9 18 chr3 93241627 93241818 -124795340 - L1PA7 LINE L1 -1515 4639 4448 10189 105 2 3 chr3 93241822 93243318 -124793840 + L1PA7 LINE L1 2949 4443 -1703 268 376 60 0 chr3 93243701 93243818 -124793340 - L2 LINE L2 -4 3268 3145 350 379 77 25 chr3 93244427 93244754 -124792404 - L2 LINE L2 -2617 697 354 2134 110 17 0 chr3 93245072 93245371 -124791787 + AluSg SINE Alu 1 304 -6 189 107 0 0 chr3 93245994 93246022 -124791136 + (TCCC)n Simple_repeat Simple_repeat 3 30 0 22 35 0 0 chr3 93246194 93246223 -124790935 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr3 93246284 93246312 -124790846 + AT_rich Low_complexity Low_complexity 1 28 0 758 109 0 0 chr3 93250843 93250953 -124786205 - L1PA8 LINE L1 0 6172 6063 222 171 0 0 chr3 93251225 93251266 -124785892 + (TA)n Simple_repeat Simple_repeat 1 41 0 2687 10 0 0 chr3 93251342 93251641 -124785517 + AluY SINE Alu 1 299 -12 1334 117 0 0 chr3 93251955 93252152 -124785006 - L1PA16 LINE L1 -9 6157 5961 369 368 111 21 chr3 93252501 93252887 -124784271 + L2 LINE L2 2191 2611 -703 236 293 216 0 chr3 93252889 93253005 -124784153 + L2 LINE L2 3168 3308 -5 218 329 61 0 chr3 93253300 93253382 -124783776 + L2 LINE L2 3184 3270 -2 219 357 14 0 chr3 93253491 93253561 -124783597 + MIR SINE MIR 81 151 -57 659 13 0 0 chr3 93253943 93254020 -124783138 + L1PA3 LINE L1 6075 6151 -4 23 0 0 0 chr3 93254307 93254330 -124782828 + AT_rich Low_complexity Low_complexity 1 23 0 422 226 0 11 chr3 93254349 93254442 -124782716 + Charlie3 DNA MER1_type 1 92 -2618 1114 172 13 26 chr3 93256631 93256858 -124780300 - AluJo SINE Alu 0 312 89 261 359 15 15 chr3 93257118 93257249 -124779909 - L2 LINE L2 0 3313 3183 233 254 84 50 chr3 93257250 93257381 -124779777 - MIR SINE MIR -103 105 1 273 135 0 0 chr3 93257513 93257565 -124779593 + (TG)n Simple_repeat Simple_repeat 1 52 0 215 299 0 52 chr3 93258042 93258119 -124779039 - MIR SINE MIR -133 129 57 182 364 0 0 chr3 93259317 93259372 -124777786 + MIR SINE MIR 208 262 0 1625 188 120 14 chr3 93259392 93259808 -124777350 - MLT1C LTR MaLR -2 465 6 22 35 0 0 chr3 93259826 93259855 -124777303 + AT_rich Low_complexity Low_complexity 1 29 0 1113 135 0 0 chr3 93260059 93260222 -124776936 - AluSg/x SINE Alu -23 289 127 259 22 22 44 chr3 93260222 93260267 -124776891 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 1993 108 7 0 chr3 93260267 93260545 -124776613 - AluY SINE Alu -31 280 1 1653 172 10 16 chr3 93260934 93261242 -124775916 - AluSp SINE Alu -7 306 1 21 36 0 0 chr3 93261281 93261309 -124775849 + AT_rich Low_complexity Low_complexity 1 28 0 354 364 67 40 chr3 93261894 93262342 -124774816 + L2 LINE L2 1825 2284 -1030 667 352 48 42 chr3 93263018 93263493 -124773665 + L2 LINE L2 2305 2782 -532 301 317 83 14 chr3 93263627 93263772 -124773386 + L2 LINE L2 3159 3313 0 320 215 76 0 chr3 93265013 93265092 -124772066 - MIR SINE MIR -1 261 177 311 329 12 0 chr3 93265068 93265153 -124772005 + L2 LINE L2 3174 3259 -13 * 396 229 85 8 chr3 93265300 93265418 -124771740 - MIR SINE MIR -105 157 31 352 252 143 34 chr3 93265622 93265769 -124771389 + MIR SINE MIR 29 191 -71 7587 21 5 1 chr3 93267960 93269183 -124767975 + L1PA4 LINE L1 4928 6153 -2 770 348 53 0 chr3 93269696 93270052 -124767106 - MLT1J LTR MaLR -37 474 100 274 237 35 0 chr3 93270248 93270362 -124766796 + (TA)n Simple_repeat Simple_repeat 2 119 0 373 233 202 8 chr3 93270442 93270571 -124766587 - MIR SINE MIR -1 261 108 330 299 126 47 chr3 93270680 93270958 -124766200 - MARNA DNA Mariner -51 535 236 1644 170 24 7 chr3 93271081 93271370 -124765788 + AluJb SINE Alu 6 299 -13 992 147 8 5 chr3 93271674 93271874 -124765284 + L1MA8 LINE L1 5789 6113 -178 933 140 33 111 chr3 93271888 93272131 -124765027 + L1MA8 LINE L1 6066 6289 -2 356 311 129 26 chr3 93273339 93273532 -124763626 - MIR SINE MIR -1 261 49 23 0 0 0 chr3 93274234 93274257 -124762901 + AT_rich Low_complexity Low_complexity 1 23 0 2300 72 3 0 chr3 93274512 93274817 -124762341 - AluY SINE Alu -5 306 1 21 0 0 0 chr3 93276204 93276225 -124760933 + AT_rich Low_complexity Low_complexity 1 21 0 824 299 87 56 chr3 93276225 93276639 -124760519 - LTR16A LTR ERVL -10 440 14 3484 132 2 0 chr3 93277032 93277564 -124759594 - L1PA16 LINE L1 -9 6157 5625 2181 164 21 15 chr3 93277568 93278289 -124758869 + L1PA16 LINE L1 4888 5609 -557 225 314 0 0 chr3 93278820 93278890 -124758268 + CT-rich Low_complexity Low_complexity 3 72 0 804 291 124 29 chr3 93279112 93279709 -124757449 - HAL1 LINE L1 -739 1768 1115 33 0 0 0 chr3 93279740 93279773 -124757385 + AT_rich Low_complexity Low_complexity 1 33 0 6025 146 38 2 chr3 93279795 93281464 -124755694 - L1PA13 LINE L1 -1 6162 4432 24 0 0 0 chr3 93282183 93282207 -124754951 + AT_rich Low_complexity Low_complexity 1 24 0 1006 188 165 59 chr3 93282297 93282552 -124754606 + AluJo SINE Alu 1 282 -30 228 135 0 0 chr3 93283811 93283848 -124753310 + (TTC)n Simple_repeat Simple_repeat 2 38 0 30 27 0 0 chr3 93284180 93284217 -124752941 + AT_rich Low_complexity Low_complexity 1 37 0 591 345 108 31 chr3 93284310 93284924 -124752234 - L2 LINE L2 -711 2603 1943 284 344 137 52 chr3 93285021 93285169 -124751989 - L2 LINE L2 -1723 1591 1457 1742 164 6 25 chr3 93285169 93285486 -124751672 + AluJo SINE Alu 1 311 -1 284 344 137 52 chr3 93285486 93286592 -124750566 - L2 LINE L2 -1857 1457 230 771 287 69 36 chr3 93286916 93287278 -124749880 + L2 LINE L2 2940 3313 0 386 321 55 6 chr3 93287316 93287481 -124749677 + MARNA DNA Mariner 396 568 -18 200 143 24 0 chr3 93288660 93288702 -124748456 + GA-rich Low_complexity Low_complexity 2 44 0 218 320 16 0 chr3 93289673 93289744 -124747414 - MIR SINE MIR -62 146 74 1010 168 9 73 chr3 93290950 93291182 -124745976 + MER20 DNA MER1_type 3 219 0 21 0 0 0 chr3 93292886 93292907 -124744251 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr3 93293454 93293487 -124743671 + AT_rich Low_complexity Low_complexity 1 33 0 429 313 75 18 chr3 93293574 93293801 -124743357 - MER102b DNA MER1_type -5 336 97 23 68 0 0 chr3 93295835 93295879 -124741279 + AT_rich Low_complexity Low_complexity 1 44 0 25 31 0 0 chr3 93295997 93296029 -124741129 + AT_rich Low_complexity Low_complexity 1 32 0 31 0 0 0 chr3 93297175 93297206 -124739952 + AT_rich Low_complexity Low_complexity 1 31 0 301 80 13 53 chr3 93297225 93297300 -124739858 + (TA)n Simple_repeat Simple_repeat 1 72 0 451 307 61 12 chr3 93297422 93297585 -124739573 - MIR SINE MIR -10 252 82 2111 97 0 14 chr3 93297914 93298203 -124738955 + AluSx SINE Alu 25 309 -3 23 54 0 0 chr3 93298449 93298486 -124738672 + AT_rich Low_complexity Low_complexity 1 37 0 1831 124 0 4 chr3 93298756 93299014 -124738144 - AluSg SINE Alu -15 295 39 1736 155 11 3 chr3 93299141 93299476 -124737682 - AluSx SINE Alu 0 337 1 234 111 56 0 chr3 93299701 93299737 -124737421 + MER9 LTR ERVK 1 38 -473 3302 114 2 12 chr3 93299737 93300238 -124736920 + MER9 LTR ERVK 16 511 0 29 78 0 0 chr3 93300621 93300685 -124736473 + AT_rich Low_complexity Low_complexity 1 64 0 3125 189 62 27 chr3 93301550 93302323 -124734835 - L1 LINE L1 -1207 4939 4140 4343 93 31 31 chr3 93302324 93303003 -124734155 + L1PB2 LINE L1 5470 6148 -3 365 123 15 0 chr3 93303263 93303328 -124733830 + (CA)n Simple_repeat Simple_repeat 1 66 0 186 354 144 44 chr3 93303351 93303670 -124733488 + L2 LINE L2 2874 3224 -48 560 219 0 0 chr3 93305406 93305502 -124731656 - Tigger7 DNA MER2_type 0 2487 2392 2617 169 20 73 chr3 93305502 93306046 -124731112 - Tigger7 DNA MER2_type -1970 517 3 261 312 92 64 chr3 93306219 93306469 -124730689 - MLT1K LTR MaLR -299 289 33 1686 174 0 3 chr3 93306720 93307002 -124730156 + AluSx SINE Alu 1 281 -31 306 0 0 0 chr3 93307005 93307039 -124730119 + (CTAA)n Simple_repeat Simple_repeat 3 36 0 212 262 0 0 chr3 93307050 93307111 -124730047 + A-rich Low_complexity Low_complexity 1 61 0 519 308 60 23 chr3 93307111 93307584 -124729574 + L1ME LINE L1 5289 5775 -387 1311 170 4 0 chr3 93307682 93307929 -124729229 + L1MA4 LINE L1 6043 6290 -10 715 301 93 33 chr3 93308424 93309066 -124728092 + HERVL LTR ERVL 2794 3504 -2150 215 284 71 47 chr3 93310055 93310182 -124726976 - MIR SINE MIR -68 194 65 266 375 57 72 chr3 93310835 93311184 -124725974 - L2 LINE L2 0 3272 2929 37 0 0 0 chr3 93311211 93311248 -124725910 + AT_rich Low_complexity Low_complexity 1 37 0 368 347 77 18 chr3 93311301 93311523 -124725635 - MIR SINE MIR 0 262 28 589 264 123 26 chr3 93311528 93311755 -124725403 + MIR SINE MIR 14 262 0 9790 67 17 1 chr3 93314013 93316059 -124721099 + L1PA6 LINE L1 4067 6136 -18 279 133 0 0 chr3 93316682 93316727 -124720431 + (TC)n Simple_repeat Simple_repeat 2 46 0 295 395 43 31 chr3 93316961 93317123 -124720035 + L2 LINE L2 3107 3270 -2 22 35 0 0 chr3 93317668 93317697 -124719461 + AT_rich Low_complexity Low_complexity 1 29 0 590 345 0 15 chr3 93317809 93318044 -124719114 - MIR SINE MIR -17 245 21 268 339 125 4 chr3 93319150 93319398 -124717760 + L2 LINE L2 1946 2223 -1091 207 0 0 0 chr3 93319502 93319525 -124717633 + (A)n Simple_repeat Simple_repeat 1 23 0 573 274 191 10 chr3 93319587 93319783 -124717375 + MIR SINE MIR 5 226 -36 515 297 27 60 chr3 93319818 93320118 -124717040 + L2 LINE L2 2214 2503 -811 636 295 102 6 chr3 93321424 93321746 -124715412 - L1M4 LINE L1 -1077 5069 4717 233 272 191 27 chr3 93321813 93321960 -124715198 + MIR SINE MIR 77 247 -15 193 308 51 39 chr3 93322435 93322513 -124714645 - MER5B DNA MER1_type -96 82 4 220 214 0 0 chr3 93322765 93322807 -124714351 + (TATATG)n Simple_repeat Simple_repeat 4 45 0 200 342 61 69 chr3 93327037 93327268 -124709890 + L2 LINE L2 3005 3233 -39 244 289 0 0 chr3 93329760 93329850 -124707308 - L1MC4 LINE L1 -1339 6703 6614 481 282 45 86 chr3 93330304 93330701 -124706457 + L1MC4a LINE L1 5502 5882 -1926 2109 243 58 11 chr3 93330816 93331355 -124705803 - MLT1F1 LTR MaLR -3 564 1 205 326 21 42 chr3 93331429 93331524 -124705634 + L2 LINE L2 3148 3240 -32 215 170 21 0 chr3 93331550 93331597 -124705561 + GA-rich Low_complexity Low_complexity 4 51 0 368 299 144 100 chr3 93331916 93332368 -124704790 + L2 LINE L2 2842 3313 0 37 0 0 0 chr3 93333054 93333091 -124704067 + AT_rich Low_complexity Low_complexity 1 37 0 24 53 0 0 chr3 93333536 93333574 -124703584 + AT_rich Low_complexity Low_complexity 1 38 0 554 203 181 28 chr3 93334193 93334370 -124702788 - MER3 DNA MER1_type -1 208 5 27 29 0 0 chr3 93334468 93334502 -124702656 + AT_rich Low_complexity Low_complexity 1 34 0 24 77 0 0 chr3 93335318 93335370 -124701788 + AT_rich Low_complexity Low_complexity 1 52 0 1553 200 66 6 chr3 93335496 93335831 -124701327 - MLT1A1 LTR MaLR -3 362 8 243 239 0 0 chr3 93335865 93335911 -124701247 - L2 LINE L2 -64 3249 3204 180 111 0 0 chr3 93336062 93336089 -124701069 + (TG)n Simple_repeat Simple_repeat 1 27 0 304 333 9 9 chr3 93336662 93336770 -124700388 - MIR3 SINE MIR -89 119 12 235 254 0 0 chr3 93337375 93337434 -124699724 - L3 LINE CR1 -154 1423 1365 460 248 45 15 chr3 93337943 93338076 -124699082 - MLT1I LTR MaLR -270 139 3 385 331 21 0 chr3 93338198 93338343 -124698815 + (TATATG)n Simple_repeat Simple_repeat 2 149 0 295 261 11 34 chr3 93338526 93338614 -124698544 + MIR SINE MIR 68 153 -55 258 310 44 9 chr3 93339537 93339650 -124697508 - MIR SINE MIR -76 186 70 198 266 0 47 chr3 93340916 93340980 -124696178 + MIR SINE MIR 57 117 -145 530 196 31 80 chr3 93341493 93341534 -124695624 + MER105 DNA DNA 50 91 -113 2148 83 13 23 chr3 93341534 93341834 -124695324 - AluSg SINE Alu -13 297 1 530 196 31 80 chr3 93341834 93341955 -124695203 + MER105 DNA DNA 91 204 0 291 54 0 0 chr3 93342052 93342089 -124695069 + (CA)n Simple_repeat Simple_repeat 1 37 0 31 44 0 0 chr3 93342619 93342664 -124694494 + AT_rich Low_complexity Low_complexity 1 45 0 981 204 5 10 chr3 93342687 93342893 -124694265 - AluJb SINE Alu -11 301 97 6387 17 1 0 chr3 93343675 93344605 -124692553 - L1HS LINE L1 -166 5989 5059 34382 32 0 0 chr3 93344625 93348786 -124688372 + L1P LINE L1 900 5060 -1086 714 144 92 26 chr3 93348781 93348934 -124688224 + L1MA8 LINE L1 6125 6287 -4 * 216 200 0 0 chr3 93349105 93349165 -124687993 + (TATG)n Simple_repeat Simple_repeat 3 62 0 23 54 0 0 chr3 93349320 93349357 -124687801 + AT_rich Low_complexity Low_complexity 1 37 0 193 294 192 41 chr3 93349657 93349803 -124687355 + L3 LINE CR1 1267 1434 -143 197 236 42 42 chr3 93350162 93350234 -124686924 - L2 LINE L2 -62 3251 3180 426 205 54 36 chr3 93357347 93357459 -124679699 - MIR SINE MIR -2 260 147 263 239 14 84 chr3 93357683 93357825 -124679333 - HAL1 LINE L1 -337 2170 2039 309 315 9 0 chr3 93357948 93358056 -124679102 - HAL1 LINE L1 -702 1805 1697 740 263 52 15 chr3 93358140 93358410 -124678748 - HAL1 LINE L1 -1115 1392 1113 2016 146 0 3 chr3 93358488 93358790 -124678368 + AluSx SINE Alu 1 301 -11 2207 99 10 0 chr3 93359678 93359972 -124677186 - AluSc SINE Alu -12 297 1 329 110 12 122 chr3 93360271 93360353 -124676805 - MADE1 DNA Mariner -7 73 1 1755 126 4 15 chr3 93361448 93361719 -124675439 - AluSx SINE Alu -20 292 25 278 296 37 28 chr3 93361719 93361827 -124675331 - MLT1I LTR MaLR -271 138 30 229 250 0 0 chr3 93361827 93361871 -124675287 - MER2 DNA MER2_type 0 345 302 451 118 13 0 chr3 93361932 93362008 -124675150 - MER2 DNA MER2_type -136 209 133 1933 147 20 0 chr3 93362010 93362500 -124674658 + AluSx SINE Alu 1 496 0 601 170 16 33 chr3 93362318 93362565 -124674593 + GA-rich Low_complexity Low_complexity 2 245 0 787 197 28 0 chr3 93362573 93362715 -124674443 - MER2 DNA MER2_type -199 146 1 513 345 71 31 chr3 93363261 93363462 -124673696 - ERVL LTR ERVL -3021 2672 2480 1877 158 37 14 chr3 93363462 93363816 -124673342 - THE1B LTR MaLR 0 364 3 513 345 71 31 chr3 93363816 93363932 -124673226 - ERVL LTR ERVL -3213 2480 2370 2117 114 3 0 chr3 93363932 93364222 -124672936 - AluSp SINE Alu -22 291 1 513 345 71 31 chr3 93364222 93364425 -124672733 - ERVL LTR ERVL -3323 2370 2086 2692 33 0 18 chr3 93364788 93365122 -124672036 - L1PA4 LINE L1 -6 6149 5822 1102 151 99 67 chr3 93365512 93365796 -124671362 - MER33 DNA MER1_type 0 324 32 1748 161 20 0 chr3 93366795 93367087 -124670071 + AluJo SINE Alu 5 302 -10 24 32 0 0 chr3 93367430 93367461 -124669697 + AT_rich Low_complexity Low_complexity 1 31 0 393 271 145 6 chr3 93367497 93367663 -124669495 - MIR SINE MIR -2 260 72 21 57 0 0 chr3 93369215 93369250 -124667908 + AT_rich Low_complexity Low_complexity 1 35 0 315 0 0 0 chr3 93370546 93370581 -124666577 + (TG)n Simple_repeat Simple_repeat 1 35 0 258 32 0 0 chr3 93370580 93370611 -124666547 + (GA)n Simple_repeat Simple_repeat 1 31 0 * 21 0 0 0 chr3 93371164 93371185 -124665973 + AT_rich Low_complexity Low_complexity 1 21 0 316 264 280 6 chr3 93371887 93372069 -124665089 - MIR SINE MIR -26 236 5 323 264 55 9 chr3 93372170 93372280 -124664878 + L2 LINE L2 3175 3289 -24 183 380 114 12 chr3 93372318 93372484 -124664674 - L2 LINE L2 -445 2869 2687 1786 167 0 7 chr3 93375818 93376105 -124661053 + AluSx SINE Alu 1 285 -27 22 0 0 0 chr3 93376146 93376168 -124660990 + AT_rich Low_complexity Low_complexity 1 22 0 750 184 0 14 chr3 93377132 93377273 -124659885 + FLAM_C SINE Alu 1 139 -4 1104 150 36 0 chr3 93377703 93377896 -124659262 - AluY SINE Alu -11 300 101 4282 126 105 101 chr3 93378034 93379424 -124657734 - pTR5 LTR ERV1 0 2438 382 2198 226 65 70 chr3 93380613 93381446 -124655712 + MER63C DNA MER1_type 1 829 -101 26 0 0 0 chr3 93381480 93381506 -124655652 + AT_rich Low_complexity Low_complexity 1 26 0 237 299 13 13 chr3 93381540 93381617 -124655541 + MER63C DNA MER1_type 850 926 -4 318 358 87 45 chr3 93383466 93383891 -124653267 + L2 LINE L2 2871 3313 0 21 0 0 0 chr3 93384558 93384579 -124652579 + AT_rich Low_complexity Low_complexity 1 21 0 657 315 5 27 chr3 93384609 93384831 -124652327 - MIR SINE MIR -26 236 20 192 125 0 0 chr3 93384931 93384963 -124652195 + (TTTTTA)n Simple_repeat Simple_repeat 1 32 0 309 219 125 94 chr3 93385684 93385765 -124651393 - L2 LINE L2 0 3313 3225 1981 58 0 12 chr3 93385765 93386023 -124651135 + AluY SINE Alu 56 310 -1 309 219 125 94 chr3 93386023 93386069 -124651089 - L2 LINE L2 -88 3225 3182 1235 234 5 57 chr3 93386416 93386834 -124650324 - MLT2C1 LTR ERVL 0 397 2 965 300 96 44 chr3 93387386 93388141 -124649017 - L2 LINE L2 -13 3300 2508 3873 155 20 13 chr3 93388842 93388860 -124648298 + L1MB3 LINE L1 5461 5477 -706 180 0 0 0 chr3 93388860 93388880 -124648278 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3873 155 20 13 chr3 93388880 93389576 -124647582 + L1MB3 LINE L1 5477 6180 -3 243 0 0 0 chr3 93392316 93392343 -124644815 + (CA)n Simple_repeat Simple_repeat 2 28 0 407 293 150 41 chr3 93392495 93392809 -124644349 - MLT1K LTR MaLR -101 487 140 212 311 101 25 chr3 93393301 93393420 -124643738 - MIR SINE MIR -57 205 78 34 65 0 0 chr3 93394241 93394303 -124642855 + AT_rich Low_complexity Low_complexity 1 62 0 213 108 0 0 chr3 93395441 93395478 -124641680 + (GA)n Simple_repeat Simple_repeat 2 38 0 417 345 102 0 chr3 93396776 93396973 -124640185 + MIR SINE MIR 15 231 -31 344 311 111 11 chr3 93398391 93398571 -124638587 - L2 LINE L2 -4 3309 3112 189 329 42 42 chr3 93398634 93398777 -124638381 + MIR SINE MIR 78 220 -42 265 136 68 11 chr3 93398788 93398895 -124638263 + (TA)n Simple_repeat Simple_repeat 1 113 0 263 358 42 0 chr3 93399042 93399137 -124638021 + MIR SINE MIR 19 117 -145 209 291 51 68 chr3 93399444 93399561 -124637597 + L2 LINE L2 2638 2752 -562 364 286 163 53 chr3 93399642 93399943 -124637215 + L2 LINE L2 2899 3232 -81 690 335 99 58 chr3 93400414 93401259 -124635899 - L2 LINE L2 -8 3305 2439 2297 113 31 8 chr3 93401310 93401664 -124635494 - THE1B LTR MaLR -2 362 1 199 288 120 52 chr3 93401679 93401870 -124635288 - L2 LINE L2 -843 2471 2268 4976 183 53 12 chr3 93402229 93403028 -124634130 + L1MCa LINE L1 6 855 -5571 300 27 0 0 chr3 93403028 93403065 -124634093 + (CAA)n Simple_repeat Simple_repeat 3 39 0 4976 183 53 12 chr3 93403065 93403257 -124633901 + L1MCa LINE L1 855 1038 -5388 509 257 129 0 chr3 93403403 93403543 -124633615 + MER63 DNA MER1_type 1 784 -278 256 195 170 54 chr3 93404149 93404241 -124632917 - FLAM_A SINE Alu -40 93 1 203 146 24 0 chr3 93406000 93406041 -124631117 + (TATATG)n Simple_repeat Simple_repeat 1 42 0 228 161 129 16 chr3 93406052 93406114 -124631044 - L1MC4 LINE L1 -1339 6703 6635 205 226 19 0 chr3 93406728 93406781 -124630377 + T-rich Low_complexity Low_complexity 5 58 0 387 41 0 0 chr3 93407169 93407218 -124629940 + (TG)n Simple_repeat Simple_repeat 2 50 0 370 301 13 33 chr3 93408047 93408200 -124628958 + GA-rich Low_complexity Low_complexity 2 151 0 2282 184 69 28 chr3 93408299 93408880 -124628278 + L1MD1 LINE L1 5561 6165 -77 531 250 24 91 chr3 93412086 93412294 -124624864 - MIR SINE MIR 0 262 69 214 182 0 0 chr3 93413819 93413863 -124623295 + (TA)n Simple_repeat Simple_repeat 2 45 0 282 286 10 31 chr3 93414361 93414459 -124622699 - L2 LINE L2 0 3272 3177 247 378 59 22 chr3 93414897 93415032 -124622126 + MIR SINE MIR 14 153 -109 32 0 0 0 chr3 93416420 93416452 -124620706 + AT_rich Low_complexity Low_complexity 1 32 0 2206 97 3 3 chr3 93416739 93417039 -124620119 + AluSp SINE Alu 1 300 -13 289 257 86 14 chr3 93417050 93417190 -124619968 - L1MC4 LINE L1 -89 7953 7804 293 312 32 13 chr3 93417316 93417473 -124619685 - L1MC4a LINE L1 -498 7310 7151 492 156 73 0 chr3 93417476 93417585 -124619573 + L1MA8 LINE L1 5993 6109 -182 267 152 0 0 chr3 93417985 93418031 -124619127 + GA-rich Low_complexity Low_complexity 4 49 0 330 346 6 19 chr3 93418483 93418645 -124618513 + L2 LINE L2 1848 2007 -1307 692 292 108 20 chr3 93418652 93418957 -124618201 - MLT1I LTR MaLR -8 401 70 216 250 0 19 chr3 93419050 93419102 -124618056 - MER5A DNA MER1_type -2 187 137 1986 264 75 26 chr3 93419250 93420102 -124617056 + MER97a DNA MER1_type 1 894 0 1372 310 91 30 chr3 93420382 93421419 -124615739 + L2 LINE L2 2204 3312 -1 766 244 120 30 chr3 93422086 93422320 -124614838 - MIR SINE MIR -6 256 2 392 172 11 0 chr3 93422379 93422466 -124614692 + GA-rich Low_complexity Low_complexity 4 91 0 2323 102 0 0 chr3 93422641 93422946 -124614212 + AluSg SINE Alu 1 305 -5 517 286 123 40 chr3 93423028 93423564 -124613594 + L1MC4a LINE L1 5311 5824 -297 235 278 62 21 chr3 93423571 93423668 -124613490 + HAL1b LINE L1 1223 1323 -25 542 153 15 15 chr3 93425244 93425381 -124611777 + GA-rich Low_complexity Low_complexity 1 137 0 32 26 0 0 chr3 93425802 93425841 -124611317 + AT_rich Low_complexity Low_complexity 1 39 0 32 26 0 0 chr3 93427913 93427952 -124609206 + AT_rich Low_complexity Low_complexity 1 39 0 369 327 199 9 chr3 93428128 93428339 -124608819 + MIR SINE MIR 12 262 0 286 236 150 86 chr3 93428327 93428362 -124608796 - MIR SINE MIR -66 196 165 * 2271 70 17 0 chr3 93428362 93428660 -124608498 - AluSp SINE Alu -10 303 1 286 236 150 86 chr3 93428660 93428764 -124608394 - MIR SINE MIR -97 165 48 21 36 0 0 chr3 93429531 93429559 -124607599 + AT_rich Low_complexity Low_complexity 1 28 0 934 192 6 0 chr3 93429668 93429835 -124607323 - AluJb SINE Alu -14 298 131 22 35 0 0 chr3 93433087 93433116 -124604042 + AT_rich Low_complexity Low_complexity 1 29 0 181 320 100 20 chr3 93434918 93435018 -124602140 - MIR SINE MIR -1 261 154 292 298 0 19 chr3 93435395 93435499 -124601659 + (TATATG)n Simple_repeat Simple_repeat 6 107 0 705 183 8 23 chr3 93435615 93435880 -124601278 + L1MA9 LINE L1 5934 6290 -22 235 333 58 50 chr3 93435993 93436233 -124600925 - L3 LINE CR1 -37 1540 1299 346 204 39 68 chr3 93436559 93436662 -124600496 + L1MCa LINE L1 1978 2077 -4349 702 312 47 0 chr3 93436714 93436929 -124600229 - MIR SINE MIR -36 226 2 1375 200 70 7 chr3 93438153 93438273 -124598885 + AluJo SINE Alu 3 114 -198 207 0 0 0 chr3 93438273 93438296 -124598862 + (TAA)n Simple_repeat Simple_repeat 3 25 0 1375 200 70 7 chr3 93438296 93438460 -124598698 + AluJo SINE Alu 114 305 -7 284 286 16 110 chr3 93440280 93440462 -124596696 - MER102b DNA MER1_type -23 318 154 405 102 0 0 chr3 93441120 93441179 -124595979 + (TG)n Simple_repeat Simple_repeat 1 59 0 1118 189 26 6 chr3 93441667 93441948 -124595210 + L1MA8 LINE L1 6025 6299 -13 22 35 0 0 chr3 93441948 93441977 -124595181 + AT_rich Low_complexity Low_complexity 1 29 0 229 306 75 30 chr3 93441995 93442194 -124594964 + L1MEd LINE L1 1050 1257 -4862 312 329 7 29 chr3 93442335 93442472 -124594686 + HAL1 LINE L1 1507 1640 -867 414 252 53 46 chr3 93443074 93443225 -124593933 - MIR SINE MIR -98 164 13 213 374 26 9 chr3 93443249 93443364 -124593794 - L2 LINE L2 -453 2861 2745 209 192 39 0 chr3 93443573 93443625 -124593533 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 1011 219 143 99 chr3 93444669 93445186 -124591972 + MLT1F LTR MaLR 3 542 0 364 333 14 24 chr3 93445277 93445452 -124591706 - MIR SINE MIR -30 178 5 21 0 0 0 chr3 93445750 93445771 -124591387 + AT_rich Low_complexity Low_complexity 1 21 0 287 289 58 58 chr3 93446432 93446640 -124590518 - L1ME3A LINE L1 0 6170 5963 1256 343 112 61 chr3 93446756 93447480 -124589678 - L1MC5 LINE L1 -564 7397 6637 487 325 68 25 chr3 93447964 93448201 -124588957 - L2 LINE L2 -381 2933 2687 651 155 60 17 chr3 93448205 93448321 -124588837 + AluJb SINE Alu 6 126 -186 233 346 20 0 chr3 93448424 93448525 -124588633 - L2 LINE L2 -1176 2138 2036 2114 189 15 0 chr3 93448624 93449021 -124588137 - L1MA6 LINE L1 -10 6290 5888 261 253 36 24 chr3 93449104 93449187 -124587971 + MER63 DNA MER1_type 978 1061 0 686 280 192 43 chr3 93449187 93449609 -124587549 - L2 LINE L2 -1284 2030 1546 896 274 0 0 chr3 93449619 93449823 -124587335 + MER58A DNA MER1_type 4 207 -17 12329 71 2 2 chr3 93449862 93452260 -124584898 - L1PA6 LINE L1 -2 6152 3739 2979 147 26 28 chr3 93452260 93452831 -124584327 - MER11A LTR ERVK -1 1265 696 5591 157 19 30 chr3 93452264 93453342 -124583816 - MER11C LTR ERVK -4 1067 1 338 106 0 0 chr3 93453342 93453389 -124583769 - HERVK11 LTR ERVK 0 7953 7907 186 286 152 36 chr3 93453389 93453501 -124583657 - L3b LINE CR1 -55 1528 1404 6889 52 1 1 chr3 93453501 93454339 -124582819 - HERVK11 LTR ERVK -159 7794 6957 * 9794 59 16 0 chr3 93454324 93455548 -124581610 - HERVK11 LTR ERVK -1186 6767 5525 * 35673 77 8 1 chr3 93455546 93460111 -124577047 - HERVK11 LTR ERVK -3352 4601 1 5540 155 21 31 chr3 93460116 93461194 -124575964 - MER11C LTR ERVK -4 1067 1 19673 95 3 16 chr3 93461194 93464133 -124573025 - L1P LINE L1 -2401 3745 845 456 259 263 15 chr3 93464134 93464339 -124572819 - L2 LINE L2 -1903 1411 1156 448 184 10 20 chr3 93464343 93464441 -124572717 - LTR16B LTR ERVL 0 464 368 615 334 146 27 chr3 93464488 93464898 -124572260 - L2 LINE L2 -2613 701 243 588 207 0 0 chr3 93465195 93465306 -124571852 - MLT1F LTR MaLR 0 542 432 1229 245 60 4 chr3 93465427 93465891 -124571267 - MLT1F-int LTR MaLR -765 606 1 270 173 49 62 chr3 93465891 93465972 -124571186 - MLT1F LTR MaLR 0 567 488 2743 75 23 63 chr3 93465978 93466406 -124570752 + MLT2A1 LTR ERVL 1 411 -33 1251 261 63 52 chr3 93466433 93466877 -124570281 - MLT1F LTR MaLR -93 449 1 377 123 9 158 chr3 93466881 93466995 -124570163 - Charlie4 DNA MER1_type -1829 132 36 25 0 0 0 chr3 93467681 93467706 -124569452 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr3 93468050 93468071 -124569087 + AT_rich Low_complexity Low_complexity 1 21 0 1532 118 4 9 chr3 93468604 93468833 -124568325 - MER30 DNA MER1_type -2 228 1 195 184 0 0 chr3 93470569 93470607 -124566551 + (TATG)n Simple_repeat Simple_repeat 3 40 0 198 103 0 0 chr3 93470646 93470675 -124566483 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 558 261 92 60 chr3 93472865 93473036 -124564122 - MIR SINE MIR -13 249 68 2289 82 3 23 chr3 93473036 93473341 -124563817 - AluSg SINE Alu -11 299 1 558 261 92 60 chr3 93473341 93473387 -124563771 - MIR SINE MIR -194 68 25 21 0 0 0 chr3 93474126 93474147 -124563011 + AT_rich Low_complexity Low_complexity 1 21 0 218 224 20 0 chr3 93476615 93476664 -124560494 + A-rich Low_complexity Low_complexity 3 52 0 22 0 0 0 chr3 93476887 93476909 -124560249 + AT_rich Low_complexity Low_complexity 1 22 0 1606 181 0 36 chr3 93477114 93477417 -124559741 - AluJb SINE Alu -18 294 3 35 92 0 0 chr3 93477657 93477755 -124559403 + AT_rich Low_complexity Low_complexity 1 98 0 365 281 103 27 chr3 93478173 93478397 -124558761 - L1ME LINE L1 -298 5823 5583 263 291 107 19 chr3 93478443 93478546 -124558612 + MIR SINE MIR 19 130 -78 33 56 0 0 chr3 93480421 93480475 -124556683 + AT_rich Low_complexity Low_complexity 1 54 0 521 301 60 15 chr3 93481125 93481324 -124555834 - MIR SINE MIR 0 262 55 2301 101 0 0 chr3 93481835 93482132 -124555026 + AluSx SINE Alu 1 297 -15 817 175 4 152 chr3 93482429 93482686 -124554472 - MER20 DNA MER1_type 0 219 1 282 288 25 0 chr3 93483077 93483157 -124554001 - L2 LINE L2 -212 3060 2979 25 0 0 0 chr3 93483552 93483577 -124553581 + AT_rich Low_complexity Low_complexity 1 25 0 433 269 113 36 chr3 93484351 93484715 -124552443 + L1ME4a LINE L1 5729 6120 -1 334 252 44 44 chr3 93486562 93486697 -124550461 + MIR SINE MIR 127 261 -1 305 352 38 0 chr3 93486926 93487031 -124550127 + MIR SINE MIR 33 141 -67 1170 273 77 39 chr3 93487332 93487965 -124549193 - L2 LINE L2 0 3313 2660 300 240 173 0 chr3 93488184 93488288 -124548870 - MER103 DNA DNA -44 122 1 282 339 113 17 chr3 93488308 93488485 -124548673 + MIR SINE MIR 31 224 -38 2219 86 3 29 chr3 93488847 93489160 -124547998 + AluSg SINE Alu 1 305 -5 191 316 105 32 chr3 93490535 93490630 -124546528 + L2 LINE L2 3169 3270 -2 2585 39 0 7 chr3 93490895 93491205 -124545953 + AluY SINE Alu 1 308 -3 2161 92 0 7 chr3 93492140 93492447 -124544711 - AluSx SINE Alu 0 305 1 306 363 112 48 chr3 93493441 93493942 -124543216 + L1M2 LINE L1 553 1085 -5764 396 0 0 0 chr3 93495362 93495406 -124541752 + (CA)n Simple_repeat Simple_repeat 2 45 0 23 0 0 0 chr3 93495713 93495736 -124541422 + AT_rich Low_complexity Low_complexity 1 23 0 209 182 0 0 chr3 93496928 93496961 -124540197 + polypyrimidine Low_complexity Low_complexity 3 35 0 24 53 0 0 chr3 93498044 93498082 -124539076 + AT_rich Low_complexity Low_complexity 1 38 0 2062 133 0 10 chr3 93498367 93498667 -124538491 - AluSx SINE Alu -13 299 3 357 224 191 105 chr3 93499019 93499229 -124537929 - MIR SINE MIR -26 236 9 186 96 39 19 chr3 93501145 93501197 -124535961 + (TA)n Simple_repeat Simple_repeat 1 53 0 409 338 75 21 chr3 93502366 93502606 -124534552 - MIR SINE MIR -1 261 9 1904 114 0 45 chr3 93503603 93503893 -124533265 + AluSq SINE Alu 1 277 -36 234 0 0 0 chr3 93503897 93503923 -124533235 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 384 22 0 0 chr3 93503923 93503968 -124533190 + (CA)n Simple_repeat Simple_repeat 1 45 0 1430 190 38 28 chr3 93503968 93504257 -124532901 + AluJo SINE Alu 1 292 -20 251 145 26 26 chr3 93504263 93504339 -124532819 + (TA)n Simple_repeat Simple_repeat 1 76 0 24 0 0 0 chr3 93504481 93504505 -124532653 + AT_rich Low_complexity Low_complexity 1 24 0 649 102 28 0 chr3 93505107 93505215 -124531943 + L1MA8 LINE L1 6178 6288 -3 467 372 86 30 chr3 93505533 93505834 -124531324 - L3 LINE CR1 -175 1402 1085 206 337 10 20 chr3 93508921 93509019 -124528139 + MIR3 SINE MIR 105 201 -7 254 351 75 0 chr3 93509085 93509179 -124527979 + MIR SINE MIR 2 102 -160 487 286 17 0 chr3 93509247 93509366 -124527792 + MIR SINE MIR 108 228 -34 200 118 29 0 chr3 93509441 93509475 -124527683 + T-rich Low_complexity Low_complexity 2 36 0 208 366 99 0 chr3 93510290 93510391 -124526767 + MIR SINE MIR 38 148 -114 291 261 14 0 chr3 93510820 93510889 -124526269 + L2 LINE L2 3202 3271 -1 24 32 0 0 chr3 93511176 93511207 -124525951 + AT_rich Low_complexity Low_complexity 1 31 0 188 355 86 11 chr3 93511295 93511388 -124525770 - L2 LINE L2 -16 3256 3157 1322 83 0 0 chr3 93511388 93511557 -124525601 + THE1C LTR MaLR 2 170 -205 6962 49 3 0 chr3 93511560 93512422 -124524736 - L1PA8 LINE L1 -5 6167 5303 1137 101 50 0 chr3 93512419 93512598 -124524560 + L1PA8 LINE L1 5132 5319 -827 * 1506 114 18 0 chr3 93512598 93512817 -124524341 + THE1C LTR MaLR 153 375 0 4456 139 41 8 chr3 93513143 93513922 -124523236 - L1PA16 LINE L1 -3 6163 5359 188 208 104 0 chr3 93514773 93514821 -124522337 - L2 LINE L2 -5 3308 3256 184 271 86 14 chr3 93514836 93514906 -124522252 - L3 LINE CR1 -7 1570 1496 848 152 127 25 chr3 93515693 93515890 -124521268 - MER20 DNA MER1_type -2 217 1 202 325 0 13 chr3 93515984 93516061 -124521097 + (CATA)n Simple_repeat Simple_repeat 3 78 0 348 94 0 0 chr3 93516125 93516178 -124520980 + (TG)n Simple_repeat Simple_repeat 1 53 0 704 156 28 14 chr3 93516512 93516653 -124520505 - FLAM_C SINE Alu 0 143 1 562 311 62 12 chr3 93516679 93516920 -124520238 + Charlie8 DNA MER1_type 21 273 -2144 866 163 12 12 chr3 93517065 93517225 -124519933 - FRAM SINE Alu -4 172 13 250 339 93 22 chr3 93517272 93517455 -124519703 - L2 LINE L2 -570 2744 2549 291 271 0 0 chr3 93520748 93520818 -124516340 - HAL1 LINE L1 -608 1899 1830 397 321 33 45 chr3 93520848 93521091 -124516067 - HAL1 LINE L1 -1424 1083 844 23 33 0 0 chr3 93521761 93521791 -124515367 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr3 93522935 93522965 -124514193 + AT_rich Low_complexity Low_complexity 1 30 0 1899 171 0 0 chr3 93523221 93523525 -124513633 - AluSx SINE Alu -8 304 1 26 0 0 0 chr3 93523525 93523551 -124513607 + AT_rich Low_complexity Low_complexity 1 26 0 1495 112 100 86 chr3 93523551 93523900 -124513258 - L1MA5A LINE L1 -2 6295 5942 21 0 0 0 chr3 93524878 93524899 -124512259 + AT_rich Low_complexity Low_complexity 1 21 0 1881 101 0 7 chr3 93524944 93525232 -124511926 - L1MA2 LINE L1 -1 6303 6018 28 61 0 0 chr3 93527080 93527129 -124510029 + AT_rich Low_complexity Low_complexity 1 49 0 679 237 90 0 chr3 93527152 93527308 -124509850 + MER20 DNA MER1_type 50 219 0 2624 126 14 23 chr3 93527324 93527551 -124509607 - Tigger2a DNA MER2_type -2274 434 211 1734 150 53 0 chr3 93527551 93527817 -124509341 - AluJb SINE Alu -24 288 9 2624 126 14 23 chr3 93527817 93528027 -124509131 - Tigger2a DNA MER2_type -2497 211 1 261 182 0 0 chr3 93528630 93528685 -124508473 + (CAT)n Simple_repeat Simple_repeat 2 56 0 209 256 128 0 chr3 93528692 93528778 -124508380 + MIR SINE MIR 163 259 -3 1354 165 25 8 chr3 93529707 93529943 -124507215 + AluJb SINE Alu 61 300 -12 2004 132 35 0 chr3 93529946 93530235 -124506923 + AluSx SINE Alu 9 307 -5 2621 196 94 29 chr3 93530434 93531017 -124506141 - LTR48 LTR ERV1 0 787 145 360 59 0 0 chr3 93531017 93531068 -124506090 + (TG)n Simple_repeat Simple_repeat 2 52 0 2621 196 94 29 chr3 93531068 93531218 -124505940 - LTR48 LTR ERV1 -642 145 6 864 140 22 28 chr3 93531232 93531411 -124505747 + L1MB2 LINE L1 5990 6167 -4 383 277 36 44 chr3 93531712 93531849 -124505309 + MIR SINE MIR 70 205 -57 23 0 0 0 chr3 93531945 93531968 -124505190 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 93532399 93532422 -124504736 + AT_rich Low_complexity Low_complexity 1 23 0 27 49 0 0 chr3 93532709 93532750 -124504408 + AT_rich Low_complexity Low_complexity 1 41 0 219 36 0 0 chr3 93533016 93533044 -124504114 + (TG)n Simple_repeat Simple_repeat 2 29 0 505 293 54 50 chr3 93534178 93534400 -124502758 + MIR SINE MIR 20 242 -20 25 51 0 0 chr3 93534921 93534960 -124502198 + AT_rich Low_complexity Low_complexity 1 39 0 32 0 0 0 chr3 93535237 93535269 -124501889 + AT_rich Low_complexity Low_complexity 1 32 0 230 28 0 56 chr3 93535772 93535808 -124501350 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 258 259 149 37 chr3 93537274 93537417 -124499741 - MIR SINE MIR -38 170 3 254 173 13 0 chr3 93539259 93539334 -124497824 + (TA)n Simple_repeat Simple_repeat 1 76 0 5648 36 6 0 chr3 93541223 93541914 -124495244 - L1P LINE L1 -1180 4966 4272 1131 195 29 28 chr3 93542049 93542350 -124494808 + MSTB LTR MaLR 64 426 0 461 290 59 24 chr3 93542369 93542538 -124494620 - MIR SINE MIR -34 228 54 440 241 163 12 chr3 93542541 93542707 -124494451 - MLT1L LTR MaLR -145 470 280 2035 122 0 10 chr3 93544452 93544776 -124492382 + AluSg SINE Alu 1 310 0 224 208 40 152 chr3 93545063 93545114 -124492044 + MER5B DNA MER1_type 68 98 -80 1732 151 11 18 chr3 93545114 93545398 -124491760 - AluSx SINE Alu -20 292 11 224 208 40 152 chr3 93545398 93545471 -124491687 + MER5B DNA MER1_type 98 178 0 319 364 97 0 chr3 93545637 93545791 -124491367 + MIR SINE MIR 28 196 -66 200 329 0 27 chr3 93547508 93547581 -124489577 + MIR SINE MIR 69 139 -123 1571 136 49 59 chr3 93547962 93548249 -124488909 + AluSx SINE Alu 23 306 -6 22 35 0 0 chr3 93548819 93548848 -124488310 + AT_rich Low_complexity Low_complexity 1 29 0 334 239 149 52 chr3 93549440 93549574 -124487584 - MIR SINE MIR -4 258 112 290 312 128 16 chr3 93549954 93550079 -124487079 - MER5A DNA MER1_type 0 189 51 1455 157 12 31 chr3 93550246 93550501 -124486657 - MER1B DNA MER1_type 0 339 130 233 207 75 138 chr3 93550345 93550519 -124486639 + Charlie3 DNA MER1_type 151 313 -2397 * 506 173 157 27 chr3 93550553 93550708 -124486450 - MER3 DNA MER1_type -51 158 1 666 137 137 0 chr3 93551550 93551667 -124485491 + FLAM_C SINE Alu 1 133 0 2169 163 55 29 chr3 93552181 93552635 -124484523 + MLT1C LTR MaLR 2 467 0 2450 72 0 0 chr3 93552705 93553012 -124484146 + AluY SINE Alu 5 311 0 180 0 0 0 chr3 93553408 93553428 -124483730 + (TA)n Simple_repeat Simple_repeat 2 21 0 2617 42 3 0 chr3 93553669 93553975 -124483183 - AluY SINE Alu -4 307 1 254 279 97 45 chr3 93554356 93554510 -124482648 + MIR3 SINE MIR 34 195 -13 191 162 44 0 chr3 93554504 93554546 -124482612 - MIR SINE MIR -105 157 114 * 666 276 45 15 chr3 93554786 93554985 -124482173 + MIR SINE MIR 1 205 -57 495 0 0 0 chr3 93555684 93555739 -124481419 + (TG)n Simple_repeat Simple_repeat 2 56 0 2015 122 11 0 chr3 93555739 93556018 -124481140 - AluY SINE Alu -27 284 3 230 226 53 8 chr3 93556097 93556230 -124480928 + (TA)n Simple_repeat Simple_repeat 2 140 0 23 33 0 0 chr3 93556301 93556331 -124480827 + AT_rich Low_complexity Low_complexity 1 30 0 860 180 7 7 chr3 93556336 93556486 -124480672 - FAM SINE Alu -22 163 14 21 0 0 0 chr3 93557076 93557097 -124480061 + AT_rich Low_complexity Low_complexity 1 21 0 1463 171 87 3 chr3 93557418 93557705 -124479453 + AluJb SINE Alu 1 311 -1 340 233 17 86 chr3 93557708 93557824 -124479334 + MER81 DNA DNA 2 109 -5 21 36 0 0 chr3 93558139 93558167 -124478991 + AT_rich Low_complexity Low_complexity 1 28 0 323 309 21 11 chr3 93558218 93558312 -124478846 - MER5A DNA MER1_type -4 185 91 259 319 11 21 chr3 93559213 93559307 -124477851 + L2 LINE L2 3221 3313 0 378 239 0 0 chr3 93559927 93559994 -124477164 - L2 LINE L2 -2 3311 3245 24 32 0 0 chr3 93560994 93561025 -124476133 + AT_rich Low_complexity Low_complexity 1 31 0 1080 152 0 6 chr3 93561100 93561278 -124475880 + L1PA15 LINE L1 5938 6114 -51 412 68 81 0 chr3 93561504 93561578 -124475580 + L1PA15 LINE L1 6086 6165 0 230 116 23 0 chr3 93562010 93562053 -124475105 + (TTATA)n Simple_repeat Simple_repeat 4 47 0 599 279 39 13 chr3 93562695 93562849 -124474309 - MIR SINE MIR -92 170 13 216 103 26 0 chr3 93564136 93564175 -124472983 + (TA)n Simple_repeat Simple_repeat 1 40 0 27 73 0 0 chr3 93564516 93564571 -124472587 + AT_rich Low_complexity Low_complexity 1 55 0 25 0 0 0 chr3 93565247 93565272 -124471886 + AT_rich Low_complexity Low_complexity 1 25 0 234 127 51 38 chr3 93565439 93565518 -124471640 + (TA)n Simple_repeat Simple_repeat 1 80 0 23 0 0 0 chr3 93565829 93565852 -124471306 + AT_rich Low_complexity Low_complexity 1 23 0 43746 43 3 2 chr3 93565858 93572004 -124465154 - L1PA4 LINE L1 -3 6152 1 525 233 50 8 chr3 93572044 93572164 -124464994 - MLT1A2 LTR MaLR -77 297 173 324 281 192 0 chr3 93572307 93572453 -124464705 + MIR SINE MIR 5 178 -84 321 265 51 0 chr3 93572857 93572955 -124464203 - MER103 DNA DNA 0 166 64 216 0 0 0 chr3 93573272 93573296 -124463862 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2338 74 0 7 chr3 93573299 93573597 -124463561 - AluY SINE Alu -14 297 2 1033 118 37 25 chr3 93573613 93573774 -124463384 - FAM SINE Alu -12 163 1 199 327 60 73 chr3 93573833 93574081 -124463077 + L2 LINE L2 2245 2489 -825 1619 193 10 3 chr3 93574211 93574512 -124462646 - AluJb SINE Alu -9 303 1 219 330 21 21 chr3 93574869 93574966 -124462192 + L2 LINE L2 2995 3091 -181 285 311 115 8 chr3 93575650 93575772 -124461386 - L2 LINE L2 -2 3270 3136 47 0 0 0 chr3 93576733 93576780 -124460378 + AT_rich Low_complexity Low_complexity 1 47 0 2428 58 0 13 chr3 93576886 93577198 -124459960 - AluY SINE Alu -3 308 1 1485 174 4 4 chr3 93578251 93578492 -124458666 + 7SLRNA srpRNA srpRNA 19 259 -61 381 22 0 0 chr3 93578498 93578544 -124458614 + (CA)n Simple_repeat Simple_repeat 2 47 0 21 0 0 0 chr3 93579167 93579188 -124457970 + AT_rich Low_complexity Low_complexity 1 21 0 247 274 94 8 chr3 93579261 93579378 -124457780 - MIR3 SINE MIR -1 207 81 1248 229 64 15 chr3 93579743 93580070 -124457088 + MER2 DNA MER2_type 2 344 0 25 31 0 0 chr3 93580732 93580764 -124456394 + AT_rich Low_complexity Low_complexity 1 32 0 227 217 0 0 chr3 93581945 93581991 -124455167 + (TA)n Simple_repeat Simple_repeat 2 47 0 234 313 12 0 chr3 93582268 93582348 -124454810 + MIR SINE MIR 182 262 0 28 61 0 0 chr3 93582521 93582570 -124454588 + AT_rich Low_complexity Low_complexity 1 49 0 24 77 0 0 chr3 93582723 93582775 -124454383 + AT_rich Low_complexity Low_complexity 1 52 0 26 30 0 0 chr3 93583627 93583660 -124453498 + AT_rich Low_complexity Low_complexity 1 33 0 365 268 169 7 chr3 93583662 93583804 -124453354 - L1ME4a LINE L1 -6 6115 5951 21 0 0 0 chr3 93584477 93584498 -124452660 + AT_rich Low_complexity Low_complexity 1 21 0 1519 194 7 36 chr3 93584541 93584845 -124452313 - AluJb SINE Alu -15 297 3 2256 98 9 19 chr3 93584985 93585301 -124451857 + AluSp SINE Alu 1 313 0 232 395 0 0 chr3 93585409 93585495 -124451663 - L2 LINE L2 -43 3229 3144 457 286 57 70 chr3 93585598 93585825 -124451333 - L2 LINE L2 -548 2766 2543 236 318 0 37 chr3 93585855 93585962 -124451196 - L2 LINE L2 -2443 871 769 181 250 0 0 chr3 93586214 93586254 -124450904 + L2 LINE L2 3204 3243 -29 1807 155 0 7 chr3 93586726 93587051 -124450107 + AluSx SINE Alu 1 323 0 591 279 13 0 chr3 93588387 93588545 -124448613 + MIR SINE MIR 79 238 -24 232 316 51 0 chr3 93589496 93589575 -124447583 + L2 LINE L2 1948 2030 -1284 410 385 55 6 chr3 93589888 93590200 -124446958 + L2 LINE L2 2303 2629 -685 2053 127 0 0 chr3 93590361 93590653 -124446505 + AluSg SINE Alu 1 292 -18 57 66 0 0 chr3 93591529 93591635 -124445523 + AT_rich Low_complexity Low_complexity 1 106 0 27 0 0 0 chr3 93592016 93592043 -124445115 + AT_rich Low_complexity Low_complexity 1 27 0 26 50 0 0 chr3 93592159 93592199 -124444959 + AT_rich Low_complexity Low_complexity 1 40 0 224 197 0 30 chr3 93592429 93592495 -124444663 + (TATATG)n Simple_repeat Simple_repeat 2 65 0 428 256 111 0 chr3 93593213 93593330 -124443828 + L2 LINE L2 3181 3310 -3 2103 97 47 20 chr3 93593636 93593936 -124443222 + AluSx SINE Alu 3 310 -2 242 122 0 20 chr3 93593982 93594031 -124443127 + (GGGAGA)n Simple_repeat Simple_repeat 3 50 0 1460 157 29 33 chr3 93594465 93594739 -124442419 + AluSc SINE Alu 21 293 -16 21 36 0 0 chr3 93595265 93595293 -124441865 + AT_rich Low_complexity Low_complexity 1 28 0 500 260 82 7 chr3 93595412 93595558 -124441600 - MIR SINE MIR -22 240 84 1339 154 3 137 chr3 93595558 93595908 -124441250 + AluJb SINE Alu 8 310 -2 2317 100 0 7 chr3 93595928 93596229 -124440929 + AluSg SINE Alu 1 299 -11 23 33 0 0 chr3 93599132 93599162 -124437996 + AT_rich Low_complexity Low_complexity 1 30 0 1747 134 0 0 chr3 93599194 93599448 -124437710 + AluSc SINE Alu 56 309 0 2135 112 3 0 chr3 93599952 93600247 -124436911 - AluSx SINE Alu 0 312 17 2450 27 17 0 chr3 93600271 93600564 -124436594 - AluY SINE Alu -13 298 1 1261 188 98 11 chr3 93600583 93600859 -124436299 + AluJo SINE Alu 1 300 -12 336 165 58 8 chr3 93601752 93601873 -124435285 + (TA)n Simple_repeat Simple_repeat 2 128 0 23 54 0 0 chr3 93603021 93603058 -124434100 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr3 93604524 93604561 -124432597 + AT_rich Low_complexity Low_complexity 1 37 0 875 255 0 0 chr3 93605509 93605697 -124431461 - MER5A DNA MER1_type 0 189 2 23 92 0 0 chr3 93607208 93607273 -124429885 + AT_rich Low_complexity Low_complexity 1 65 0 455 333 81 32 chr3 93608953 93609139 -124428019 + MER91A DNA MER1_type 2 196 0 206 182 36 0 chr3 93609217 93609272 -124427886 + (TTG)n Simple_repeat Simple_repeat 2 58 0 2420 207 37 3 chr3 93609300 93609898 -124427260 + Charlie1 DNA MER1_type 2144 2761 0 556 332 88 4 chr3 93610588 93610814 -124426344 + MIR SINE MIR 1 245 -17 1379 199 76 0 chr3 93610924 93611175 -124425983 - AluJb SINE Alu -38 274 5 222 191 0 0 chr3 93611745 93611792 -124425366 + (TA)n Simple_repeat Simple_repeat 2 48 0 226 211 0 14 chr3 93611792 93611863 -124425295 - L1MCa LINE L1 -4362 2064 1995 268 127 36 0 chr3 93612368 93612423 -124424735 + (TA)n Simple_repeat Simple_repeat 1 57 0 538 327 37 9 chr3 93612460 93612674 -124424484 - MIR SINE MIR -4 258 39 270 0 0 0 chr3 93612954 93612984 -124424174 + (TG)n Simple_repeat Simple_repeat 2 31 0 2108 116 20 3 chr3 93613665 93613968 -124423190 - AluSq SINE Alu -5 308 1 32 0 0 0 chr3 93613968 93614000 -124423158 + AT_rich Low_complexity Low_complexity 1 32 0 34 42 0 0 chr3 93615767 93615815 -124421343 + AT_rich Low_complexity Low_complexity 1 48 0 206 316 7 15 chr3 93617705 93617841 -124419317 + (TA)n Simple_repeat Simple_repeat 1 135 0 2462 65 0 7 chr3 93617846 93618154 -124419004 + AluY SINE Alu 1 306 -5 261 135 0 0 chr3 93618156 93618208 -124418950 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 22 0 0 0 chr3 93618295 93618317 -124418841 + AT_rich Low_complexity Low_complexity 1 22 0 39 60 0 0 chr3 93618378 93618445 -124418713 + AT_rich Low_complexity Low_complexity 1 67 0 23 0 0 0 chr3 93618515 93618538 -124418620 + AT_rich Low_complexity Low_complexity 1 23 0 24 67 0 0 chr3 93618841 93618886 -124418272 + AT_rich Low_complexity Low_complexity 1 45 0 553 220 11 94 chr3 93619177 93619368 -124417790 - MER5B DNA MER1_type -3 175 1 844 191 116 71 chr3 93619871 93620249 -124416909 - LTR7 LTR ERV1 -38 412 18 292 210 0 16 chr3 93620253 93620315 -124416843 - MIR SINE MIR -104 158 98 200 163 23 0 chr3 93621195 93621238 -124415920 + T-rich Low_complexity Low_complexity 5 48 0 1052 195 43 117 chr3 93622987 93623381 -124413777 - MLT1A1 LTR MaLR 0 365 1 213 39 0 0 chr3 93623920 93623946 -124413212 + (ATG)n Simple_repeat Simple_repeat 2 27 0 370 285 122 14 chr3 93623947 93624161 -124412997 - MIR SINE MIR -10 252 16 478 127 28 0 chr3 93624161 93624232 -124412926 - Charlie3 DNA MER1_type -8 2702 2630 588 143 0 0 chr3 93624235 93624319 -124412839 - Charlie3 DNA MER1_type -2449 261 178 936 99 0 0 chr3 93624319 93624440 -124412718 - AluJo SINE Alu -174 138 18 2893 223 74 10 chr3 93624451 93625237 -124411921 - L1ME2 LINE L1 0 6164 5329 431 255 38 32 chr3 93625234 93625391 -124411767 - L1ME LINE L1 -5901 169 12 * 1082 195 99 5 chr3 93625534 93625755 -124411403 + AluJo SINE Alu 41 282 -30 984 240 154 3 chr3 93625976 93626301 -124410857 - MLT1A2 LTR MaLR 0 374 1 678 310 36 36 chr3 93626303 93626635 -124410523 - L2 LINE L2 0 3313 2982 705 290 24 56 chr3 93629520 93629858 -124407300 - L1ME3A LINE L1 -23 6147 5821 2214 102 3 0 chr3 93629928 93630221 -124406937 - AluSg SINE Alu -16 294 1 363 44 0 0 chr3 93630581 93630626 -124406532 + (TA)n Simple_repeat Simple_repeat 1 45 0 715 248 40 5 chr3 93630740 93630938 -124406220 + MIR SINE MIR 28 232 -30 2564 80 8 8 chr3 93631109 93631472 -124405686 - L1PA13 LINE L1 0 6163 5801 243 0 0 0 chr3 93631643 93631670 -124405488 + (CA)n Simple_repeat Simple_repeat 2 28 0 213 39 0 0 chr3 93631669 93631695 -124405463 + (GA)n Simple_repeat Simple_repeat 2 27 0 * 1036 117 9 9 chr3 93631770 93631995 -124405163 + (TTTC)n Simple_repeat Simple_repeat 1 225 0 1097 181 5 29 chr3 93632003 93632207 -124404951 - AluJo SINE Alu -113 199 1 183 191 71 0 chr3 93632402 93632444 -124404714 - L2 LINE L2 -1 3312 3268 180 345 142 9 chr3 93632606 93632719 -124404439 + MIR3 SINE MIR 74 201 -7 1396 169 88 11 chr3 93632877 93633138 -124404020 + AluJo SINE Alu 1 281 -31 2170 127 0 0 chr3 93633426 93633726 -124403432 + AluSx SINE Alu 1 300 -12 2293 95 10 0 chr3 93637931 93638237 -124398921 - AluSq SINE Alu -4 309 1 284 247 39 13 chr3 93639422 93639499 -124397659 - L2 LINE L2 0 3313 3235 27 62 0 0 chr3 93641843 93641891 -124395267 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr3 93642122 93642143 -124395015 + AT_rich Low_complexity Low_complexity 1 21 0 254 297 34 51 chr3 93642601 93642719 -124394439 + MIR SINE MIR 91 206 -56 204 40 0 0 chr3 93644776 93644801 -124392357 + (T)n Simple_repeat Simple_repeat 1 25 0 473 306 36 50 chr3 93645511 93645752 -124391406 - MIR SINE MIR -13 249 14 257 283 126 54 chr3 93645793 93646016 -124391142 + MLT1L LTR MaLR 112 350 -265 542 252 69 6 chr3 93646625 93646784 -124390374 - MIR SINE MIR 0 262 94 1152 190 26 26 chr3 93646785 93647053 -124390105 + AluJb SINE Alu 1 268 -44 26 0 0 0 chr3 93647474 93647500 -124389658 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 93649993 93650014 -124387144 + AT_rich Low_complexity Low_complexity 1 21 0 2348 84 0 0 chr3 93650773 93651071 -124386087 + AluY SINE Alu 1 298 -13 451 292 130 0 chr3 93653248 93653433 -124383725 + MIR SINE MIR 39 247 -15 2343 240 21 25 chr3 93653937 93654565 -124382593 - MLT1E2 LTR MaLR 0 626 2 383 315 185 26 chr3 93655110 93655532 -124381626 - L2 LINE L2 -670 2644 2156 230 0 0 32 chr3 93656189 93656220 -124380938 + (TA)n Simple_repeat Simple_repeat 2 31 0 518 43 14 0 chr3 93656325 93656394 -124380764 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 476 326 63 69 chr3 93656398 93656424 -124380734 + L2 LINE L2 507 532 -2782 2353 65 7 0 chr3 93656424 93656717 -124380441 - AluY SINE Alu -16 295 1 476 326 63 69 chr3 93656717 93657040 -124380118 + L2 LINE L2 532 854 -2460 734 183 166 18 chr3 93657071 93657240 -124379918 + MER46A DNA MER2_type 43 236 0 197 264 110 58 chr3 93657288 93657443 -124379715 + L2 LINE L2 2488 2650 -664 1401 153 32 75 chr3 93657780 93658062 -124379096 - AluJb SINE Alu -34 278 9 219 296 13 22 chr3 93658711 93658803 -124378355 + MIR SINE MIR 36 128 -80 * 920 151 17 34 chr3 93658798 93658977 -124378181 - MER5A DNA MER1_type -13 176 1 197 320 40 0 chr3 93658978 93659053 -124378105 + MIR SINE MIR 103 180 -82 283 42 62 0 chr3 93659840 93659888 -124377270 + T-rich Low_complexity Low_complexity 5 55 0 186 43 0 0 chr3 93660208 93660231 -124376927 + (T)n Simple_repeat Simple_repeat 1 23 0 320 296 30 0 chr3 93661869 93662001 -124375157 - L1ME4a LINE L1 -2 6119 5984 339 125 0 0 chr3 93662043 93662091 -124375067 - MLT2D LTR ERVL 0 464 417 237 149 65 13 chr3 93662125 93662279 -124374879 + (TA)n Simple_repeat Simple_repeat 2 163 0 1985 158 11 42 chr3 93662291 93662469 -124374689 - MLT2D LTR ERVL -64 350 187 2200 122 33 28 chr3 93662469 93662831 -124374327 + THE1B LTR MaLR 1 364 0 1985 158 11 42 chr3 93662831 93663013 -124374145 - MLT2D LTR ERVL -227 187 1 230 164 18 0 chr3 93663013 93663068 -124374090 + (CATA)n Simple_repeat Simple_repeat 2 57 0 320 167 39 29 chr3 93663068 93663170 -124373988 + (TA)n Simple_repeat Simple_repeat 2 104 0 246 250 28 0 chr3 93663254 93663326 -124373832 + CT-rich Low_complexity Low_complexity 4 77 0 386 303 157 11 chr3 93663336 93663521 -124373637 + L2 LINE L2 2204 2415 -899 260 385 23 28 chr3 93663661 93663879 -124373279 + L2 LINE L2 2626 2842 -472 21 36 0 0 chr3 93664831 93664859 -124372299 + AT_rich Low_complexity Low_complexity 1 28 0 274 283 71 30 chr3 93664951 93665050 -124372108 - MIR SINE MIR -3 259 157 2336 83 6 10 chr3 93665410 93665722 -124371436 + AluSq SINE Alu 3 313 0 1806 196 15 0 chr3 93666297 93666638 -124370520 - MER7A DNA MER2_type -1 345 2 360 0 0 0 chr3 93666644 93666684 -124370474 + (TG)n Simple_repeat Simple_repeat 2 41 0 27 29 0 0 chr3 93666883 93666917 -124370241 + AT_rich Low_complexity Low_complexity 1 34 0 1089 268 95 52 chr3 93667302 93668137 -124369021 + L2 LINE L2 2289 3263 -50 364 101 159 0 chr3 93668173 93668242 -124368916 - MADE1 DNA Mariner 0 80 1 219 326 23 23 chr3 93668739 93668825 -124368333 + MIR SINE MIR 70 155 -107 672 197 130 0 chr3 93671074 93671282 -124365876 - Charlie5 DNA MER1_type -49 2563 2329 266 200 80 0 chr3 93671282 93671357 -124365801 - Charlie5 DNA MER1_type -164 2448 2368 24 0 0 0 chr3 93673245 93673269 -124363889 + AT_rich Low_complexity Low_complexity 1 24 0 742 311 105 16 chr3 93673461 93673908 -124363250 - L1MC4a LINE L1 -1962 5846 5360 431 156 0 62 chr3 93673910 93674217 -124362941 + (TA)n Simple_repeat Simple_repeat 1 287 0 303 215 123 0 chr3 93674594 93674724 -124362434 - L1MC4a LINE L1 -837 5309 5164 2036 118 0 7 chr3 93675316 93675613 -124361545 - AluY SINE Alu -16 295 1 529 263 19 88 chr3 93675783 93675988 -124361170 + MIR SINE MIR 69 259 -3 21 0 0 0 chr3 93677137 93677158 -124360000 + AT_rich Low_complexity Low_complexity 1 21 0 1625 175 122 25 chr3 93677619 93678013 -124359145 + MSTB1 LTR MaLR 1 432 0 2389 67 0 0 chr3 93679868 93680168 -124356990 - AluY SINE Alu -11 300 1 226 365 60 20 chr3 93682089 93682338 -124354820 + L2 LINE L2 1699 1957 -1357 258 302 31 0 chr3 93682680 93682776 -124354382 - MIR SINE MIR 0 262 164 393 376 78 53 chr3 93682986 93683573 -124353585 + L2 LINE L2 2374 2975 -339 2552 118 3 0 chr3 93684387 93684750 -124352408 + THE1B LTR MaLR 1 364 0 2284 97 0 0 chr3 93685188 93685498 -124351660 + AluSg SINE Alu 1 310 0 2013 127 16 19 chr3 93685694 93686017 -124351141 + THE1C LTR MaLR 54 375 0 221 192 39 19 chr3 93687141 93687193 -124349965 - L2 LINE L2 -5 3308 3256 239 289 128 47 chr3 93687605 93687754 -124349404 + MIR3 SINE MIR 41 201 -7 2066 173 3 22 chr3 93688414 93688783 -124348375 + MLT2D LTR ERVL 3 364 -50 213 222 19 0 chr3 93688783 93688837 -124348321 + (CA)n Simple_repeat Simple_repeat 2 56 0 190 381 68 0 chr3 93688922 93689040 -124348118 + MIR3 SINE MIR 68 193 -15 664 297 124 43 chr3 93689132 93689640 -124347518 - Tigger8 DNA MER2_type -104 562 14 285 286 98 98 chr3 93691562 93691807 -124345351 - MIR SINE MIR 0 262 18 558 100 0 0 chr3 93692078 93692158 -124345000 + MADE1 DNA Mariner 1 80 0 207 100 0 0 chr3 93692494 93692524 -124344634 + (CA)n Simple_repeat Simple_repeat 1 30 0 239 349 69 50 chr3 93692576 93692794 -124344364 - L2 LINE L2 -194 3078 2857 27 62 0 0 chr3 93693192 93693240 -124343918 + AT_rich Low_complexity Low_complexity 1 48 0 395 298 48 68 chr3 93694224 93694278 -124342880 + LTR16C LTR ERVL 160 214 -277 342 67 0 0 chr3 93694278 93694323 -124342835 + (TG)n Simple_repeat Simple_repeat 2 46 0 395 298 48 68 chr3 93694323 93694520 -124342638 + LTR16C LTR ERVL 214 406 -85 198 150 0 0 chr3 93694628 93694668 -124342490 + (TTAAA)n Simple_repeat Simple_repeat 4 43 0 2365 96 0 0 chr3 93694939 93695241 -124341917 + AluSg SINE Alu 1 302 -8 505 262 55 7 chr3 93695959 93696104 -124341054 + MIR SINE MIR 49 200 -62 401 281 74 100 chr3 93696604 93697299 -124339859 + L1M4 LINE L1 4629 5306 -840 1625 136 110 19 chr3 93697299 93697608 -124339550 - MER44D DNA MER2_type -2 607 1 401 281 74 100 chr3 93697608 93697645 -124339513 + L1M4 LINE L1 5306 5342 -804 270 226 15 45 chr3 93698755 93698888 -124338270 - L1M4 LINE L1 -2167 3979 3851 8140 150 48 10 chr3 93698890 93699390 -124337768 - Tigger1 DNA MER2_type -1 2417 1938 216 0 0 0 chr3 93699390 93699414 -124337744 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 518 99 0 0 chr3 93699414 93699485 -124337673 - L1PA2 LINE L1 -10 6145 6075 8140 150 48 10 chr3 93699485 93700431 -124336727 - Tigger1 DNA MER2_type -479 1939 914 1890 98 0 0 chr3 93700468 93700733 -124336425 + Tigger1 DNA MER2_type 1611 1875 -543 5015 172 19 3 chr3 93700734 93701611 -124335547 - Tigger1 DNA MER2_type -1527 891 1 442 285 32 43 chr3 93701620 93701873 -124335285 - L1M4 LINE L1 -2302 3844 3595 1165 161 115 14 chr3 93701876 93702162 -124334996 + MER33 DNA MER1_type 7 321 -3 231 319 29 0 chr3 93702652 93702721 -124334437 + MIR SINE MIR 2 72 -190 997 282 73 47 chr3 93703606 93704177 -124332981 - L2 LINE L2 -8 3305 2717 7086 46 12 2 chr3 93706378 93707709 -124329449 - L1PA7 LINE L1 0 6154 4814 2107 117 0 0 chr3 93707875 93708180 -124328978 + AluSg SINE Alu 1 305 0 238 244 0 0 chr3 93708851 93708896 -124328262 + HsTC2 DNA Tc2 1854 1898 0 2127 125 0 0 chr3 93709279 93709574 -124327584 + AluSx SINE Alu 1 295 -17 1553 188 0 48 chr3 93710115 93710424 -124326734 + AluJo SINE Alu 3 296 -16 21 0 0 0 chr3 93710494 93710515 -124326643 + AT_rich Low_complexity Low_complexity 1 21 0 243 125 0 0 chr3 93711611 93711651 -124325507 + (T)n Simple_repeat Simple_repeat 1 40 0 518 286 28 28 chr3 93713117 93713299 -124323859 - MIR SINE MIR -71 191 10 342 0 0 0 chr3 93713632 93713670 -124323488 + (ATG)n Simple_repeat Simple_repeat 1 38 0 2060 94 0 31 chr3 93715514 93715802 -124321356 + AluSg SINE Alu 1 279 -31 248 0 31 0 chr3 93715806 93715838 -124321320 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2661 42 0 0 chr3 93716737 93717048 -124320110 + AluY SINE Alu 1 311 0 307 347 141 41 chr3 93719092 93719887 -124317271 - L2 LINE L2 -38 3234 2293 23 0 0 0 chr3 93720038 93720061 -124317097 + AT_rich Low_complexity Low_complexity 1 23 0 692 277 20 67 chr3 93720152 93720405 -124316753 - MIR SINE MIR 0 262 22 1514 183 33 46 chr3 93721496 93721802 -124315356 + AluJb SINE Alu 1 302 -10 913 278 32 24 chr3 93722007 93722259 -124314899 - MIR SINE MIR -4 258 5 27 0 0 0 chr3 93722446 93722473 -124314685 + AT_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr3 93722605 93722641 -124314517 + AT_rich Low_complexity Low_complexity 1 36 0 1428 157 19 74 chr3 93723230 93723555 -124313603 - AluJb SINE Alu 0 312 6 21 71 0 0 chr3 93723674 93723716 -124313442 + AT_rich Low_complexity Low_complexity 1 42 0 301 314 29 43 chr3 93724577 93724717 -124312441 - MIR SINE MIR -51 211 74 388 308 59 12 chr3 93724732 93724901 -124312257 - MER69A DNA AcHobo 0 177 1 256 274 47 28 chr3 93725366 93725472 -124311686 + MLT1L LTR MaLR 164 271 -344 492 312 74 0 chr3 93725520 93725709 -124311449 + MLT1L LTR MaLR 349 551 -64 1606 131 7 21 chr3 93725776 93726059 -124311099 + L1MA2 LINE L1 6026 6304 0 22 56 0 0 chr3 93727545 93727581 -124309577 + AT_rich Low_complexity Low_complexity 1 36 0 198 0 0 0 chr3 93727915 93727937 -124309221 + (T)n Simple_repeat Simple_repeat 1 22 0 2405 64 0 10 chr3 93727960 93728271 -124308887 + AluY SINE Alu 1 308 -3 1360 68 0 0 chr3 93728273 93728450 -124308708 + AluY SINE Alu 135 311 0 1020 178 93 27 chr3 93728458 93728717 -124308441 - AluJo SINE Alu -36 276 1 888 194 11 26 chr3 93729185 93729376 -124307782 + MER5A DNA MER1_type 1 188 -1 498 307 16 62 chr3 93729379 93729512 -124307646 + MIR SINE MIR 18 137 -125 2464 105 5 27 chr3 93729512 93729884 -124307274 - THE1B LTR MaLR 0 364 1 498 307 16 62 chr3 93729884 93729994 -124307164 + MIR SINE MIR 137 250 -12 286 328 210 0 chr3 93731245 93731364 -124305794 - MER91A DNA MER1_type -44 152 9 231 280 0 0 chr3 93731374 93731424 -124305734 - MER91A DNA MER1_type -143 53 4 223 326 92 0 chr3 93731446 93731544 -124305614 - MIR3 SINE MIR -11 197 91 226 278 135 24 chr3 93732024 93732150 -124305008 - MIR SINE MIR -4 258 119 248 326 167 21 chr3 93732615 93732759 -124304399 + MIR3 SINE MIR 43 207 -1 983 168 102 5 chr3 93733091 93733288 -124303870 + L1PB4 LINE L1 5939 6154 -2 237 263 50 50 chr3 93733370 93733450 -124303708 + L2 LINE L2 3234 3313 0 2043 157 0 0 chr3 93733882 93734187 -124302971 + AluSx SINE Alu 1 305 -7 485 255 214 0 chr3 93734694 93734839 -124302319 + MER5B DNA MER1_type 2 177 -1 294 371 51 46 chr3 93735317 93735710 -124301448 - L2 LINE L2 -989 2325 1931 7418 88 14 0 chr3 93736117 93737934 -124299224 - L1PA7 LINE L1 -3 6151 4315 5372 86 30 0 chr3 93737936 93738691 -124298467 + L1PA7 LINE L1 3544 4321 -1825 655 279 16 70 chr3 93739426 93739670 -124297488 - MIR SINE MIR -26 236 6 2002 108 7 0 chr3 93739829 93740107 -124297051 + AluSx SINE Alu 1 280 -32 279 0 0 0 chr3 93740108 93740139 -124297019 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 189 328 15 0 chr3 93740188 93740255 -124296903 - L2 LINE L2 -2 3311 3244 26 82 0 0 chr3 93740945 93741006 -124296152 + AT_rich Low_complexity Low_complexity 1 61 0 22 0 0 0 chr3 93741758 93741780 -124295378 + AT_rich Low_complexity Low_complexity 1 22 0 2214 73 0 0 chr3 93741788 93742063 -124295095 + AluY SINE Alu 20 294 -17 200 231 115 0 chr3 93742569 93742621 -124294537 - MIR SINE MIR -6 256 199 351 281 33 8 chr3 93743146 93743267 -124293891 + MIR SINE MIR 107 230 -32 456 299 150 6 chr3 93743429 93743596 -124293562 + MIR SINE MIR 2 192 -70 371 271 21 7 chr3 93744076 93744216 -124292942 + MER103 DNA DNA 6 147 -19 321 231 104 71 chr3 93744227 93744409 -124292749 - L1ME4a LINE L1 -152 5969 5782 4848 208 34 12 chr3 93744489 93745300 -124291858 + L1P4 LINE L1 4151 5007 -1159 1388 220 7 10 chr3 93745300 93745591 -124291567 - AluJo SINE Alu -18 294 5 4848 208 34 12 chr3 93745591 93746125 -124291033 + L1P4 LINE L1 5007 5528 -638 6969 224 12 65 chr3 93746125 93747423 -124289735 + L1 LINE L1 1470 2836 -3310 2607 3 0 26 chr3 93747423 93747728 -124289430 + L1PA2 LINE L1 5854 6155 0 6969 224 12 65 chr3 93747728 93748813 -124288345 + L1 LINE L1 2836 3473 -2673 1997 131 26 26 chr3 93748813 93749125 -124288033 + AluSx SINE Alu 1 312 0 6969 224 12 65 chr3 93749125 93749965 -124287193 + L1 LINE L1 3473 4356 -1790 45 34 0 0 chr3 93750969 93751028 -124286130 + AT_rich Low_complexity Low_complexity 1 59 0 22 35 0 0 chr3 93751924 93751953 -124285205 + AT_rich Low_complexity Low_complexity 1 29 0 395 254 18 27 chr3 93752053 93752163 -124284995 + MIR3 SINE MIR 92 200 -8 22 0 0 0 chr3 93753837 93753859 -124283299 + AT_rich Low_complexity Low_complexity 1 22 0 1365 182 4 4 chr3 93755475 93755722 -124281436 + AluJo SINE Alu 40 286 -26 429 141 14 0 chr3 93755920 93755991 -124281167 - AluJ/FLAM SINE Alu -238 74 3 1707 150 45 26 chr3 93756090 93756402 -124280756 - THE1B LTR MaLR 0 364 39 496 305 58 0 chr3 93756428 93756618 -124280540 + Charlie2 DNA MER1_type 95 295 -2567 515 292 52 4 chr3 93756705 93756938 -124280220 + Charlie2 DNA MER1_type 2500 2743 -119 1863 126 10 29 chr3 93757828 93758138 -124279020 - AluJo SINE Alu -6 306 3 246 116 0 0 chr3 93758907 93758950 -124278208 + (TG)n Simple_repeat Simple_repeat 1 43 0 1937 143 6 22 chr3 93759186 93759500 -124277658 + AluSq SINE Alu 1 309 -4 231 114 0 0 chr3 93759705 93759740 -124277418 + (CA)n Simple_repeat Simple_repeat 2 36 0 207 288 68 27 chr3 93759763 93759836 -124277322 + L2 LINE L2 3199 3274 -39 216 0 0 0 chr3 93760154 93760178 -124276980 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 218 180 40 0 chr3 93760253 93760303 -124276855 + (TA)n Simple_repeat Simple_repeat 1 52 0 22 0 0 0 chr3 93760561 93760583 -124276575 + AT_rich Low_complexity Low_complexity 1 22 0 716 319 109 49 chr3 93760672 93760882 -124276276 + L2 LINE L2 2431 2627 -687 1564 182 7 19 chr3 93760882 93761190 -124275968 - AluJo SINE Alu -8 304 1 716 319 109 49 chr3 93761190 93761493 -124275665 + L2 LINE L2 2627 2975 -339 351 314 36 36 chr3 93761766 93761903 -124275255 - L2 LINE L2 -15 3298 3162 1425 129 0 13 chr3 93762626 93762859 -124274299 + L1PA8 LINE L1 5940 6169 -3 27 62 0 0 chr3 93763741 93763789 -124273369 + AT_rich Low_complexity Low_complexity 1 48 0 236 224 0 17 chr3 93764041 93764099 -124273059 + L2 LINE L2 3216 3272 0 238 371 98 0 chr3 93764888 93765031 -124272127 + MIR SINE MIR 103 259 -3 251 140 20 0 chr3 93765037 93765087 -124272071 + (TTA)n Simple_repeat Simple_repeat 2 52 0 210 341 12 12 chr3 93765113 93765198 -124271960 + MIR3 SINE MIR 116 200 -8 2229 84 7 3 chr3 93765873 93766214 -124270944 - AluY SINE Alu 0 311 1 25 65 0 0 chr3 93767862 93767908 -124269250 + AT_rich Low_complexity Low_complexity 1 46 0 432 0 0 0 chr3 93767915 93767963 -124269195 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1881 113 4 0 chr3 93767970 93768226 -124268932 - AluSp SINE Alu -56 257 1 27 0 0 0 chr3 93768990 93769017 -124268141 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr3 93769393 93769414 -124267744 + AT_rich Low_complexity Low_complexity 1 21 0 2345 101 0 0 chr3 93771064 93771362 -124265796 - AluSc SINE Alu -11 298 1 263 291 53 60 chr3 93771369 93771520 -124265638 - L2 LINE L2 -52 3261 3112 1855 306 91 17 chr3 93771527 93772407 -124264751 - L2 LINE L2 -129 3184 2237 361 257 91 31 chr3 93772630 93772815 -124264343 + MLT1I LTR MaLR 266 409 0 1111 254 128 12 chr3 93772815 93773221 -124263937 - L2 LINE L2 -1080 2234 1782 23 0 0 0 chr3 93775209 93775232 -124261926 + AT_rich Low_complexity Low_complexity 1 23 0 2171 112 3 6 chr3 93775618 93775931 -124261227 + AluSp SINE Alu 2 313 0 204 214 0 0 chr3 93775982 93776038 -124261120 + (TTAAA)n Simple_repeat Simple_repeat 1 56 0 463 264 0 9 chr3 93776234 93776344 -124260814 - MIR SINE MIR -1 261 153 426 269 19 0 chr3 93777671 93777779 -124259379 - MER81 DNA DNA 0 114 5 22 0 0 0 chr3 93778684 93778706 -124258452 + AT_rich Low_complexity Low_complexity 1 22 0 285 370 11 39 chr3 93778716 93778923 -124258235 + MIR3 SINE MIR 11 209 -53 712 222 146 12 chr3 93779314 93779485 -124257673 + MER105 DNA DNA 10 203 -1 215 333 114 15 chr3 93779791 93779923 -124257235 + L2 LINE L2 2905 3049 -264 1071 198 5 5 chr3 93781813 93782030 -124255128 - AluJb SINE Alu -14 298 82 237 298 145 16 chr3 93784277 93784401 -124252757 + MIR SINE MIR 72 211 -51 239 77 0 26 chr3 93788155 93788194 -124248964 + (TTCTCC)n Simple_repeat Simple_repeat 5 42 0 25 118 0 0 chr3 93788365 93788509 -124248649 + AT_rich Low_complexity Low_complexity 1 144 0 2415 45 3 0 chr3 93788756 93789045 -124248113 - AluY SINE Alu -21 290 1 28 99 0 0 chr3 93789102 93789193 -124247965 + AT_rich Low_complexity Low_complexity 1 91 0 192 77 0 0 chr3 93789472 93789498 -124247660 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1886 144 0 19 chr3 93791684 93791996 -124245162 - AluSx SINE Alu -6 306 1 459 241 66 52 chr3 93792615 93792827 -124244331 - MER20 DNA MER1_type -4 215 1 1537 172 3 110 chr3 93792946 93793336 -124243822 - MER7A DNA MER2_type 0 346 1 21 0 0 0 chr3 93793434 93793455 -124243703 + AT_rich Low_complexity Low_complexity 1 21 0 588 262 148 0 chr3 93793455 93793638 -124243520 - MIR SINE MIR -31 231 22 6573 41 0 5 chr3 93795279 93796077 -124241081 - L1PA5 LINE L1 0 6154 5361 24 32 0 0 chr3 93796410 93796441 -124240717 + AT_rich Low_complexity Low_complexity 1 31 0 289 304 56 87 chr3 93796456 93796722 -124240436 + L1ME LINE L1 5569 5826 -295 228 306 35 0 chr3 93796857 93796942 -124240216 + L1MC4 LINE L1 6615 6702 -1340 228 312 32 32 chr3 93797127 93797220 -124239938 - L2 LINE L2 -7 3306 3214 801 137 0 0 chr3 93797480 93797611 -124239547 + (TCCC)n Simple_repeat Simple_repeat 2 132 0 26 30 0 0 chr3 93797821 93797854 -124239304 + AT_rich Low_complexity Low_complexity 1 33 0 384 357 127 53 chr3 93799668 93799804 -124237354 - L2 LINE L2 -1 3271 3147 1940 105 80 42 chr3 93799804 93800165 -124236993 + THE1C LTR MaLR 1 375 0 384 357 127 53 chr3 93800165 93800406 -124236752 - L2 LINE L2 -125 3147 2866 2150 97 3 16 chr3 93800554 93800863 -124236295 + AluSx SINE Alu 1 305 -7 290 342 134 22 chr3 93801090 93801365 -124235793 - L2 LINE L2 -927 2387 2082 612 289 54 10 chr3 93801379 93801583 -124235575 + MIR SINE MIR 49 261 -1 334 191 235 26 chr3 93802442 93802557 -124234601 + L2 LINE L2 3175 3313 0 22 35 0 0 chr3 93803781 93803810 -124233348 + AT_rich Low_complexity Low_complexity 1 29 0 270 0 0 0 chr3 93804340 93804370 -124232788 + (T)n Simple_repeat Simple_repeat 1 30 0 285 286 98 98 chr3 93807095 93807340 -124229818 - MIR SINE MIR 0 262 18 558 100 0 0 chr3 93807611 93807691 -124229467 + MADE1 DNA Mariner 1 80 0 207 100 0 0 chr3 93808027 93808057 -124229101 + (CA)n Simple_repeat Simple_repeat 1 30 0 239 349 69 50 chr3 93808109 93808327 -124228831 - L2 LINE L2 -194 3078 2857 28 61 0 0 chr3 93808725 93808774 -124228384 + AT_rich Low_complexity Low_complexity 1 49 0 395 298 48 68 chr3 93809757 93809811 -124227347 + LTR16C LTR ERVL 160 214 -277 306 73 0 0 chr3 93809811 93809852 -124227306 + (TG)n Simple_repeat Simple_repeat 2 42 0 395 298 48 68 chr3 93809852 93810049 -124227109 + LTR16C LTR ERVL 214 406 -85 198 150 0 0 chr3 93810157 93810197 -124226961 + (TTAAA)n Simple_repeat Simple_repeat 4 43 0 2415 45 3 0 chr3 93810468 93810757 -124226401 + AluY SINE Alu 1 290 -21 25 118 0 0 chr3 93811004 93811148 -124226010 + AT_rich Low_complexity Low_complexity 1 144 0 239 77 0 26 chr3 93811319 93811358 -124225800 + (GGAGAA)n Simple_repeat Simple_repeat 5 42 0 270 0 0 0 chr3 93815243 93815273 -124221885 + (T)n Simple_repeat Simple_repeat 1 30 0 2051 140 0 9 chr3 93815502 93815817 -124221341 + AluSq SINE Alu 1 312 -1 1013 111 6 17 chr3 93815824 93816004 -124221154 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 198 103 0 0 chr3 93816007 93816036 -124221122 + (GAAA)n Simple_repeat Simple_repeat 1 29 0 264 167 67 0 chr3 93816178 93816238 -124220920 + L1MA9 LINE L1 6211 6274 -38 262 336 29 29 chr3 93816308 93816412 -124220746 - MER5A DNA MER1_type -26 163 60 463 296 37 31 chr3 93816549 93816711 -124220447 + MIR SINE MIR 14 176 -86 863 227 97 16 chr3 93816979 93817226 -124219932 + AluJo SINE Alu 39 305 -7 30 45 0 0 chr3 93818775 93818819 -124218339 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr3 93818939 93818961 -124218197 + AT_rich Low_complexity Low_complexity 1 22 0 262 303 75 58 chr3 93820344 93820638 -124216520 + L2 LINE L2 2387 2685 -629 820 137 8 0 chr3 93820656 93820780 -124216378 + FLAM_C SINE Alu 2 126 -7 1345 191 62 4 chr3 93821305 93821733 -124215425 - MLT2B2 LTR ERVL -1 514 1 288 284 0 37 chr3 93821786 93821867 -124215291 + MIR SINE MIR 67 144 -118 991 164 18 96 chr3 93822447 93822667 -124214491 - AluJo SINE Alu -23 289 87 324 48 0 0 chr3 93822668 93822710 -124214448 + (TG)n Simple_repeat Simple_repeat 2 43 0 293 243 45 0 chr3 93823458 93823569 -124213589 + (TA)n Simple_repeat Simple_repeat 1 116 0 258 136 0 0 chr3 93823662 93823706 -124213452 + (TCC)n Simple_repeat Simple_repeat 2 45 0 234 0 0 0 chr3 93824076 93824102 -124213056 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2287 101 0 0 chr3 93826232 93826539 -124210619 + AluSq SINE Alu 1 307 -6 255 292 139 15 chr3 93826541 93826678 -124210480 + MIR SINE MIR 32 185 -77 273 376 40 54 chr3 93826911 93827060 -124210098 - L2 LINE L2 -9 3263 3117 355 320 152 61 chr3 93827183 93827685 -124209473 - L2 LINE L2 -47 3225 2770 309 26 0 0 chr3 93827685 93827723 -124209435 + (TTA)n Simple_repeat Simple_repeat 1 38 0 1841 113 0 90 chr3 93827727 93828037 -124209121 - AluSx SINE Alu -30 282 1 355 320 152 61 chr3 93828037 93828290 -124208868 - L2 LINE L2 -504 2768 2410 217 313 0 0 chr3 93828458 93828522 -124208636 - L2 LINE L2 -13 3259 3196 744 171 0 91 chr3 93828581 93828768 -124208390 - MER20 DNA MER1_type -2 217 48 23 0 0 0 chr3 93829511 93829534 -124207624 + AT_rich Low_complexity Low_complexity 1 23 0 426 355 115 25 chr3 93829555 93829955 -124207203 - L3b LINE CR1 -10 1573 1138 213 176 40 14 chr3 93830005 93830079 -124207079 + CT-rich Low_complexity Low_complexity 2 77 0 309 26 0 0 chr3 93830221 93830259 -124206899 + (TG)n Simple_repeat Simple_repeat 1 38 0 244 278 0 0 chr3 93830538 93830628 -124206530 + L1MC4 LINE L1 6614 6703 -1339 219 69 0 0 chr3 93830631 93830660 -124206498 + (TA)n Simple_repeat Simple_repeat 1 29 0 402 287 107 7 chr3 93830814 93830964 -124206194 + MIR3 SINE MIR 39 203 -5 420 348 48 16 chr3 93831279 93831529 -124205629 + L3b LINE CR1 1156 1413 -170 2120 126 0 3 chr3 93831642 93831952 -124205206 - AluY SINE Alu -2 309 1 1268 56 0 0 chr3 93832015 93832177 -124204981 - L1PA5 LINE L1 -1 6153 5992 21 0 0 0 chr3 93833102 93833123 -124204035 + AT_rich Low_complexity Low_complexity 1 21 0 327 293 203 0 chr3 93833322 93833445 -124203713 + MER5A DNA MER1_type 39 186 -3 21 36 0 0 chr3 93833648 93833676 -124203482 + AT_rich Low_complexity Low_complexity 1 28 0 259 263 0 12 chr3 93833861 93833941 -124203217 + T-rich Low_complexity Low_complexity 3 81 0 1896 146 0 19 chr3 93834725 93835034 -124202124 + AluJb SINE Alu 1 303 -9 27 62 0 0 chr3 93835228 93835276 -124201882 + AT_rich Low_complexity Low_complexity 1 48 0 213 200 40 0 chr3 93837245 93837320 -124199838 + (TA)n Simple_repeat Simple_repeat 2 79 0 1675 174 0 20 chr3 93839365 93839659 -124197499 + AluJo SINE Alu 1 288 -24 2516 54 3 0 chr3 93840724 93841021 -124196137 - AluY SINE Alu -13 298 1 334 304 23 23 chr3 93841140 93841311 -124195847 + (TATATG)n Simple_repeat Simple_repeat 6 176 0 205 209 23 0 chr3 93842177 93842220 -124194938 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 223 196 0 71 chr3 93842518 93842574 -124194584 + L2 LINE L2 2431 2482 -832 1302 249 132 15 chr3 93842768 93843222 -124193936 - L1ME3 LINE L1 -6 6156 5650 779 274 105 34 chr3 93843266 93843704 -124193454 - L1ME3 LINE L1 -875 5271 4803 245 237 0 5 chr3 93843704 93843772 -124193386 - Alu SINE Alu -121 182 137 508 211 76 116 chr3 93843773 93844143 -124193015 - L1ME3 LINE L1 -1398 4748 4394 918 306 37 0 chr3 93844164 93844517 -124192641 + L1M4 LINE L1 4004 4369 -1777 301 233 48 0 chr3 93844537 93844640 -124192518 + (TATATG)n Simple_repeat Simple_repeat 3 110 0 * 429 288 11 6 chr3 93844574 93844751 -124192407 + (TA)n Simple_repeat Simple_repeat 1 178 0 331 225 22 22 chr3 93844752 93844841 -124192317 - L1MC4 LINE L1 -1340 6702 6614 303 200 74 63 chr3 93844823 93844918 -124192240 + L1MC4 LINE L1 6614 6709 -1333 * 473 333 58 0 chr3 93845012 93845219 -124191939 - L1ME3 LINE L1 -1947 4199 3981 2223 54 43 0 chr3 93845393 93845673 -124191485 - AluY SINE Alu -19 292 1 245 423 31 35 chr3 93845722 93845949 -124191209 + L2 LINE L2 3027 3252 -20 44458 34 1 3 chr3 93845949 93852111 -124185047 - L1PA3 LINE L1 0 6155 9 23 0 0 0 chr3 93852511 93852534 -124184624 + AT_rich Low_complexity Low_complexity 1 23 0 308 181 84 12 chr3 93853275 93853358 -124183800 + MIR SINE MIR 66 154 -108 333 220 44 33 chr3 93853678 93853769 -124183389 - L1MC4 LINE L1 -1338 6704 6613 187 56 93 0 chr3 93853769 93853823 -124183335 + (TA)n Simple_repeat Simple_repeat 2 60 0 24 0 0 0 chr3 93853851 93853875 -124183283 + AT_rich Low_complexity Low_complexity 1 24 0 257 279 120 20 chr3 93854016 93854165 -124182993 - MIR3 SINE MIR -24 238 58 772 236 5 46 chr3 93854168 93854384 -124182774 - MER3 DNA MER1_type -1 208 2 223 200 0 0 chr3 93854391 93854431 -124182727 - MIR SINE MIR -219 43 4 1653 167 3 49 chr3 93854674 93854998 -124182160 - AluJo SINE Alu -3 309 1 257 246 66 0 chr3 93855219 93855280 -124181878 - MIR SINE MIR -136 126 62 2070 99 32 23 chr3 93859682 93860025 -124177133 + L1MA3 LINE L1 5960 6305 0 25 65 0 0 chr3 93860100 93860146 -124177012 + AT_rich Low_complexity Low_complexity 1 46 0 2512 99 13 13 chr3 93861010 93861385 -124175773 - THE1C LTR MaLR 0 375 1 434 266 80 0 chr3 93861471 93861584 -124175574 + MIR SINE MIR 53 174 -88 1216 327 66 33 chr3 93861650 93862377 -124174781 + L3 LINE CR1 609 1359 -218 184 358 0 0 chr3 93863487 93863554 -124173604 - L2 LINE L2 -5 3308 3242 * 399 338 4 52 chr3 93863541 93863772 -124173386 - MIR SINE MIR -27 235 16 258 236 28 0 chr3 93865824 93865896 -124171262 - L1M4 LINE L1 -1896 4250 4177 248 317 10 58 chr3 93866634 93866738 -124170420 - MER81 DNA DNA -15 99 1 2275 103 0 0 chr3 93867075 93867377 -124169781 + AluSx SINE Alu 1 302 -10 22 0 0 0 chr3 93867617 93867639 -124169519 + AT_rich Low_complexity Low_complexity 1 22 0 200 330 43 21 chr3 93867778 93867872 -124169286 - MER5B DNA MER1_type -79 99 4 1967 117 33 0 chr3 93868714 93868987 -124168171 + AluSx SINE Alu 1 282 -30 339 65 0 0 chr3 93870357 93870403 -124166755 + (GA)n Simple_repeat Simple_repeat 1 46 0 210 340 21 0 chr3 93870560 93870645 -124166513 - L2 LINE L2 -58 3255 3166 2483 72 0 3 chr3 93870645 93870950 -124166208 + AluY SINE Alu 1 304 -7 318 143 16 0 chr3 93872099 93872162 -124164996 + L1PB2 LINE L1 6082 6145 -6 22 35 0 0 chr3 93872353 93872382 -124164776 + AT_rich Low_complexity Low_complexity 1 29 0 4328 189 31 25 chr3 93873300 93874190 -124162968 + MER54A LTR ERVL 1 896 -5 237 368 26 0 chr3 93876406 93876523 -124160635 - MER94 DNA DNA -3 131 12 338 281 16 16 chr3 93879059 93879187 -124157971 + T-rich Low_complexity Low_complexity 1 128 0 210 203 14 14 chr3 93880868 93880937 -124156221 + (TA)n Simple_repeat Simple_repeat 2 70 0 556 291 35 61 chr3 93882870 93883100 -124154058 - L2 LINE L2 0 3313 3090 216 171 0 0 chr3 93883136 93883177 -124153981 + (TG)n Simple_repeat Simple_repeat 2 42 0 1095 228 5 5 chr3 93883938 93884162 -124152996 + MER58A DNA MER1_type 1 224 0 754 268 46 34 chr3 93885974 93886162 -124150996 + MIR SINE MIR 21 214 -48 252 0 0 0 chr3 93886162 93886190 -124150968 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 754 268 46 34 chr3 93886190 93886240 -124150918 + MIR SINE MIR 214 262 0 22 0 0 0 chr3 93887376 93887398 -124149760 + AT_rich Low_complexity Low_complexity 1 22 0 1549 154 79 22 chr3 93887828 93888123 -124149035 - AluSx SINE Alu 0 310 1 1515 126 5 0 chr3 93888138 93888352 -124148806 - AluSg/x SINE Alu -15 295 81 1774 162 13 23 chr3 93888401 93888709 -124148449 - AluJo SINE Alu -6 306 2 24 67 0 0 chr3 93888709 93888754 -124148404 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr3 93888864 93888887 -124148271 + AT_rich Low_complexity Low_complexity 1 23 0 656 227 6 0 chr3 93888938 93889114 -124148044 + (TA)n Simple_repeat Simple_repeat 2 178 0 840 221 40 0 chr3 93889677 93889876 -124147282 - MER3 DNA MER1_type 0 209 3 27 62 0 0 chr3 93890234 93890282 -124146876 + AT_rich Low_complexity Low_complexity 1 48 0 364 91 30 0 chr3 93890326 93890392 -124146766 + (TA)n Simple_repeat Simple_repeat 2 69 0 26 0 0 0 chr3 93891708 93891734 -124145424 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 93891941 93891962 -124145196 + AT_rich Low_complexity Low_complexity 1 21 0 29 70 0 0 chr3 93893023 93893080 -124144078 + AT_rich Low_complexity Low_complexity 1 57 0 24 67 0 0 chr3 93895883 93895928 -124141230 + AT_rich Low_complexity Low_complexity 1 45 0 2666 226 34 16 chr3 93896971 93897594 -124139564 + MER82 DNA MER2_type 10 643 -10 359 21 21 0 chr3 93897608 93897656 -124139502 + (GTTTG)n Simple_repeat Simple_repeat 2 50 0 1165 176 5 41 chr3 93897672 93897893 -124139265 - AluJo SINE Alu -99 213 1 2327 110 0 0 chr3 93899045 93899344 -124137814 + AluSq SINE Alu 1 299 -14 411 254 30 15 chr3 93899440 93899574 -124137584 + MER103 DNA DNA 12 147 -19 348 64 0 0 chr3 93900514 93900561 -124136597 + (TG)n Simple_repeat Simple_repeat 1 47 0 188 315 41 0 chr3 93901726 93901799 -124135359 + L2 LINE L2 2218 2293 -1021 512 299 204 8 chr3 93902958 93903316 -124133842 - L1ME4a LINE L1 -2 6119 5692 806 338 36 36 chr3 93903455 93904207 -124132951 + L2 LINE L2 2472 3229 -43 597 253 159 89 chr3 93904208 93904761 -124132397 - MLT1G1 LTR MaLR -1 594 3 231 261 28 33 chr3 93906245 93906392 -124130766 + (TA)n Simple_repeat Simple_repeat 2 149 -31 207 0 0 0 chr3 93906392 93906415 -124130743 + (CA)n Simple_repeat Simple_repeat 2 24 0 231 261 28 33 chr3 93906415 93906447 -124130711 + (TA)n Simple_repeat Simple_repeat 149 180 0 434 313 112 5 chr3 93906451 93906665 -124130493 + MIR SINE MIR 14 250 -12 22 35 0 0 chr3 93906675 93906704 -124130454 + AT_rich Low_complexity Low_complexity 1 29 0 2016 117 24 0 chr3 93906769 93907060 -124130098 - AluSg SINE Alu -12 298 1 2377 101 0 0 chr3 93907264 93907561 -124129597 - AluSx SINE Alu -13 299 3 21 0 0 0 chr3 93908558 93908579 -124128579 + AT_rich Low_complexity Low_complexity 1 21 0 2556 111 35 0 chr3 93915267 93915644 -124121514 - MLT1B LTR MaLR 0 390 1 317 278 51 34 chr3 93917588 93917764 -124119394 + L1MC4a LINE L1 5706 5884 -1924 439 381 51 27 chr3 93918223 93918709 -124118449 + L2 LINE L2 2199 2696 -618 1667 182 32 0 chr3 93918893 93919173 -124117985 + AluJb SINE Alu 1 289 -23 261 0 0 0 chr3 93919249 93919278 -124117880 + (TG)n Simple_repeat Simple_repeat 2 30 0 277 287 144 29 chr3 93919529 93919703 -124117455 + MER117 DNA MER1_type 2 195 -2 1861 182 0 0 chr3 93919786 93920088 -124117070 + AluJb SINE Alu 1 302 -10 189 382 0 0 chr3 93920664 93920719 -124116439 - L2 LINE L2 -107 3165 3111 187 340 75 6 chr3 93920753 93920912 -124116246 - L2 LINE L2 -232 3040 2871 891 208 0 0 chr3 93920935 93921089 -124116069 + AluJb SINE Alu 110 263 -49 676 232 89 32 chr3 93921762 93921952 -124115206 + MER63A DNA MER1_type 9 209 -1 2177 112 0 3 chr3 93922930 93923242 -124113916 + AluSg SINE Alu 1 311 0 228 360 99 27 chr3 93923736 93923847 -124113311 - L2 LINE L2 -17 3255 3137 306 357 67 22 chr3 93924363 93924632 -124112526 - L2 LINE L2 -835 2479 2199 197 361 0 0 chr3 93924658 93924719 -124112439 - L2 LINE L2 -62 3251 3191 246 32 0 0 chr3 93924775 93924786 -124112372 + (CA)n Simple_repeat Simple_repeat 1 11 -476 2549 153 7 19 chr3 93924786 93925216 -124111942 - MSTB LTR MaLR -1 425 1 246 32 0 0 chr3 93925216 93925231 -124111927 + (CA)n Simple_repeat Simple_repeat 10 487 0 246 32 0 0 chr3 93925231 93925262 -124111896 + (CA)n Simple_repeat Simple_repeat 2 32 0 215 367 70 15 chr3 93925518 93925777 -124111381 - L2 LINE L2 -1433 1881 1609 180 315 0 74 chr3 93925946 93926054 -124111104 - L2 LINE L2 -2766 548 449 239 290 218 8 chr3 93926573 93926697 -124110461 - MIR SINE MIR -80 182 33 27 49 0 0 chr3 93928277 93928318 -124108840 + AT_rich Low_complexity Low_complexity 1 41 0 593 280 86 5 chr3 93930935 93931121 -124106037 + MIR SINE MIR 5 205 -57 2132 118 6 16 chr3 93932285 93932600 -124104558 - AluSx SINE Alu 0 312 1 423 228 75 2 chr3 93932827 93932932 -124104226 - LTR16C LTR ERVL -2 489 345 294 261 33 72 chr3 93933358 93933511 -124103647 + HsTC2c DNA Tc2 134 280 -449 700 290 93 14 chr3 93933554 93933833 -124103325 + HsTC2c DNA Tc2 356 656 -73 1513 206 21 43 chr3 93933943 93934103 -124103055 + MLT1A1 LTR MaLR 1 163 -202 198 0 0 0 chr3 93934103 93934125 -124103033 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 1513 206 21 43 chr3 93934125 93934337 -124102821 + MLT1A1 LTR MaLR 163 365 0 2322 115 18 39 chr3 93934872 93935255 -124101903 - THE1C LTR MaLR 0 375 1 665 144 79 0 chr3 93936124 93936263 -124100895 + L1MA7 LINE L1 6142 6291 0 287 353 101 7 chr3 93937216 93937355 -124099803 - L2 LINE L2 0 3272 3121 3333 60 9 9 chr3 93938379 93938827 -124098331 + LTR7 LTR ERV1 1 448 -2 19179 96 11 16 chr3 93938829 93941841 -124095317 + HERVH LTR ERV1 1 2995 -4718 949 113 7 0 chr3 93941820 93941970 -124095188 + HERVH LTR ERV1 3140 3290 -4423 * 3190 117 0 6 chr3 93941960 93942465 -124094693 + HERVH LTR ERV1 3492 3993 -3720 3307 118 2 2 chr3 93942467 93942966 -124094192 + HERVH LTR ERV1 4488 4986 -2727 297 0 0 0 chr3 93942967 93943000 -124094158 + (TCTCCC)n Simple_repeat Simple_repeat 1 33 0 5425 73 37 33 chr3 93943000 93943809 -124093349 + SVA Other Other 57 868 -518 5762 67 84 42 chr3 93943967 93945000 -124092158 + SVA Other Other 433 1412 0 996 180 0 0 chr3 93945002 93945180 -124091978 + HERVH LTR ERV1 4972 5149 -2564 818 150 21 77 chr3 93945181 93945414 -124091744 + HERVH LTR ERV1 5600 5819 -1894 2099 114 45 16 chr3 93945417 93945793 -124091365 + HERVH LTR ERV1 7327 7713 0 3334 64 2 15 chr3 93945793 93946247 -124090911 + LTR7 LTR ERV1 1 448 -2 903 236 190 38 chr3 93946334 93946835 -124090323 + MLT1G LTR MaLR 1 577 -13 274 299 0 0 chr3 93947532 93947599 -124089559 - MIR SINE MIR -64 144 78 1404 193 10 40 chr3 93947653 93947953 -124089205 + AluJb SINE Alu 1 291 -21 23 68 0 0 chr3 93948009 93948053 -124089105 + AT_rich Low_complexity Low_complexity 1 44 0 550 324 183 7 chr3 93948652 93949188 -124087970 + L2 LINE L2 2665 3305 -8 877 267 113 31 chr3 93949585 93950035 -124087123 + L2 LINE L2 1279 1765 -1549 750 169 14 7 chr3 93950051 93950193 -124086965 - Tigger3(Golem) DNA MER2_type -2 3027 2885 518 216 171 11 chr3 93950270 93950446 -124086712 + L2 LINE L2 3106 3309 -4 314 390 37 0 chr3 93950516 93950706 -124086452 - MIR SINE MIR -60 202 6 263 179 15 0 chr3 93950895 93950962 -124086196 + CT-rich Low_complexity Low_complexity 2 69 0 3936 168 7 11 chr3 93951425 93952133 -124085025 + MER50 LTR ERV1 1 705 -29 1147 212 102 60 chr3 93952228 93952689 -124084469 + MER39 LTR ERV1 67 707 0 21 0 0 0 chr3 93953090 93953111 -124084047 + AT_rich Low_complexity Low_complexity 1 21 0 262 303 35 7 chr3 93953318 93953463 -124083695 + (TATATG)n Simple_repeat Simple_repeat 2 150 0 317 123 0 18 chr3 93953466 93953523 -124083635 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 381 93 0 0 chr3 93953597 93953651 -124083507 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 344 264 101 23 chr3 93953897 93954204 -124082954 + HAL1 LINE L1 2044 2374 -133 1009 249 56 36 chr3 93954277 93954793 -124082365 + MER34 LTR ERV1 1 707 0 290 316 81 6 chr3 93954968 93955142 -124082016 + MIR SINE MIR 48 234 -28 2271 121 0 0 chr3 93956462 93956775 -124080383 - AluSq SINE Alu 0 313 1 25 0 0 0 chr3 93956929 93956954 -124080204 + AT_rich Low_complexity Low_complexity 1 25 0 3723 147 18 49 chr3 93957152 93957885 -124079273 + MER50 LTR ERV1 1 710 -24 454 310 59 20 chr3 93958423 93958626 -124078532 + MIR SINE MIR 50 260 -2 1854 155 181 12 chr3 93959336 93959750 -124077408 - MER31A LTR ERV1 0 485 2 21 57 0 0 chr3 93959846 93959881 -124077277 + AT_rich Low_complexity Low_complexity 1 35 0 277 276 26 0 chr3 93960224 93960300 -124076858 - MER5B DNA MER1_type -99 79 2 561 294 63 17 chr3 93961302 93961540 -124075618 + MLT1J1 LTR MaLR 68 316 -130 22 0 0 0 chr3 93961903 93961925 -124075233 + AT_rich Low_complexity Low_complexity 1 22 0 949 229 53 25 chr3 93962375 93962757 -124074401 + MER39 LTR ERV1 145 706 -1 446 152 93 12 chr3 93963100 93963242 -124073916 + MER34 LTR ERV1 381 707 0 225 231 115 0 chr3 93963788 93963866 -124073292 + MLT1J1 LTR MaLR 356 442 -4 5572 150 15 27 chr3 93964366 93965294 -124071864 + L1MA4 LINE L1 4928 5843 -457 1749 137 150 24 chr3 93965294 93965674 -124071484 + MSTA LTR MaLR 1 428 0 5572 150 15 27 chr3 93965674 93966122 -124071036 + L1MA4 LINE L1 5843 6295 -5 2349 155 52 5 chr3 93966452 93966859 -124070299 + MSTB LTR MaLR 1 426 0 264 371 76 0 chr3 93966921 93967026 -124070132 - L2 LINE L2 -44 3228 3116 1543 210 104 22 chr3 93967454 93967820 -124069338 - MSTD LTR MaLR 0 396 1 31 68 0 0 chr3 93968515 93968574 -124068584 + AT_rich Low_complexity Low_complexity 1 59 0 2037 134 0 13 chr3 93969430 93969737 -124067421 - AluSg SINE Alu -7 303 1 2561 53 0 0 chr3 93970068 93970371 -124066787 + AluY SINE Alu 1 303 -8 215 133 53 133 chr3 93970406 93970481 -124066677 - MIR SINE MIR -56 152 86 183 260 10 115 chr3 93970457 93970553 -124066605 - MIR3 SINE MIR -24 184 99 * 181 345 0 0 chr3 93970828 93970886 -124066272 + L2 LINE L2 531 588 -2726 1069 252 101 40 chr3 93971082 93971558 -124065600 + MLT1D LTR MaLR 1 505 0 233 348 8 12 chr3 93971834 93971944 -124065214 + MIR SINE MIR 3 111 -97 287 143 0 18 chr3 93972744 93972800 -124064358 + (CA)n Simple_repeat Simple_repeat 1 55 0 525 166 0 37 chr3 93972837 93973024 -124064134 + (TA)n Simple_repeat Simple_repeat 1 180 0 322 275 54 97 chr3 93973235 93973541 -124063617 + MLT1I LTR MaLR 1 286 -123 3141 83 18 22 chr3 93973541 93973603 -124063555 - MLT2A1 LTR ERVL 0 444 383 723 54 0 0 chr3 93973603 93973695 -124063463 + (TA)n Simple_repeat Simple_repeat 1 92 0 3141 83 18 22 chr3 93973695 93974078 -124063080 - MLT2A1 LTR ERVL -61 383 1 322 275 54 97 chr3 93974078 93974196 -124062962 + MLT1I LTR MaLR 286 407 -2 207 197 155 42 chr3 93974224 93974295 -124062863 + MIR3 SINE MIR 126 204 -4 1772 146 63 30 chr3 93975172 93975535 -124061623 - THE1C LTR MaLR 0 375 1 1783 176 70 14 chr3 93975538 93975907 -124061251 - MLT1B LTR MaLR 0 390 1 818 259 25 47 chr3 93975907 93976140 -124061018 - MER58B DNA MER1_type -2107 313 87 2435 78 0 13 chr3 93976140 93976447 -124060711 + AluY SINE Alu 1 303 -8 818 259 25 47 chr3 93976447 93976533 -124060625 - MER58B DNA MER1_type -2333 87 1 323 221 71 0 chr3 93977953 93978080 -124059078 - L1ME4a LINE L1 -4 6117 5982 1333 206 42 0 chr3 93978461 93978747 -124058411 + MLT1A1 LTR MaLR 68 365 0 2377 120 22 3 chr3 93979006 93979363 -124057795 + THE1B LTR MaLR 1 364 0 195 377 58 0 chr3 93979481 93979550 -124057608 - L2 LINE L2 0 3313 3241 282 56 0 0 chr3 93979619 93979655 -124057503 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 191 387 4 79 chr3 93980393 93980646 -124056512 - L2 LINE L2 -376 2938 2705 633 171 0 0 chr3 93981075 93981180 -124055978 + AluJ SINE Alu 1 105 -207 3658 122 49 0 chr3 93981180 93981754 -124055404 - LTR43 LTR ERV1 0 602 1 19980 176 56 39 chr3 93981754 93984270 -124052888 - LTR43-int LTR ERV1 0 4798 2186 189 0 0 0 chr3 93984270 93984291 -124052867 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 19980 176 56 39 chr3 93984291 93986505 -124050653 - LTR43-int LTR ERV1 -2612 2186 11 3909 126 12 2 chr3 93986514 93987110 -124050048 - LTR43 LTR ERV1 0 602 1 996 192 5 26 chr3 93987117 93987310 -124049848 + AluJ SINE Alu 108 296 -16 1823 201 25 8 chr3 93987447 93987805 -124049353 + MLT1A1 LTR MaLR 1 364 -1 460 308 32 16 chr3 93987805 93987983 -124049175 + MLT1G3 LTR MaLR 52 232 -298 1154 186 82 12 chr3 93987983 93988270 -124048888 - MLT1D LTR MaLR 0 505 214 28 0 0 0 chr3 93988274 93988302 -124048856 + AT_rich Low_complexity Low_complexity 1 28 0 1516 113 9 4 chr3 93988302 93988533 -124048625 - L1PB1 LINE L1 -4 6147 5916 4507 41 2 0 chr3 93989179 93989721 -124047437 + L1PA2 LINE L1 5517 6059 -96 21 0 0 0 chr3 93989900 93989921 -124047237 + AT_rich Low_complexity Low_complexity 1 21 0 1472 153 4 32 chr3 93991061 93991396 -124045762 + AluJo SINE Alu 42 369 0 1211 244 46 33 chr3 93991868 93992410 -124044748 - L1M4 LINE L1 -5112 1743 1204 26 0 0 0 chr3 93992411 93992437 -124044721 + AT_rich Low_complexity Low_complexity 1 26 0 343 291 94 38 chr3 93992483 93992696 -124044462 - L1M4 LINE L1 -5677 1178 954 413 309 7 7 chr3 93992998 93993150 -124044008 - L1M4 LINE L1 -6616 243 92 257 242 73 65 chr3 93993233 93993357 -124043801 - L1MC4 LINE L1 -364 7678 7554 348 295 185 5 chr3 93993368 93993568 -124043590 + L2 LINE L2 2466 2701 -613 399 167 31 3 chr3 93993617 93993715 -124043443 - L1MB2 LINE L1 -16 6167 6055 606 258 0 0 chr3 93993737 93993857 -124043301 + FLAM_C SINE Alu 1 120 -23 216 0 0 0 chr3 93993867 93993891 -124043267 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 487 365 67 37 chr3 93994030 93994433 -124042725 + L2 LINE L2 2825 3239 -74 182 310 52 0 chr3 93994467 93994525 -124042633 + L2 LINE L2 3227 3287 -26 180 0 0 0 chr3 93995633 93995653 -124041505 + (T)n Simple_repeat Simple_repeat 1 20 0 26 0 0 0 chr3 93995948 93995974 -124041184 + AT_rich Low_complexity Low_complexity 1 26 0 1561 194 77 6 chr3 93996250 93996590 -124040568 - MLT1A1 LTR MaLR -1 364 1 2098 87 7 7 chr3 93996782 93997081 -124040077 - L1PB1 LINE L1 -289 5862 5564 4094 178 14 2 chr3 93997083 93998139 -124039019 + L1P5 LINE L1 4458 5528 -623 466 206 14 110 chr3 93998178 93998324 -124038834 - MLT1D LTR MaLR -359 146 15 397 320 227 0 chr3 93998323 93998495 -124038663 + MLT1G1 LTR MaLR 318 528 -67 * 23 0 0 0 chr3 93999133 93999156 -124038002 + AT_rich Low_complexity Low_complexity 1 23 0 268 136 23 0 chr3 93999568 93999612 -124037546 - THE1B LTR MaLR 0 355 311 * 851 106 0 0 chr3 93999608 93999721 -124037437 - THE1B LTR MaLR -249 115 3 2604 171 36 11 chr3 93999726 94000252 -124036906 - L1MA10 LINE L1 -389 5779 5238 2717 156 17 48 chr3 94000255 94000839 -124036319 + L1MA10 LINE L1 5767 6332 -2 1243 229 68 32 chr3 94000891 94001271 -124035887 + MSTD LTR MaLR 3 396 0 1080 276 88 31 chr3 94001368 94001851 -124035307 + MLT1H LTR MaLR 1 549 0 1341 236 36 0 chr3 94001917 94002226 -124034932 + MER58B DNA MER1_type 12 331 -10 22 80 0 0 chr3 94002771 94002821 -124034337 + AT_rich Low_complexity Low_complexity 1 50 0 1945 144 24 0 chr3 94003111 94003409 -124033749 - AluSx SINE Alu -7 305 1 23 0 0 0 chr3 94004425 94004448 -124032710 + AT_rich Low_complexity Low_complexity 1 23 0 234 0 0 0 chr3 94004626 94004652 -124032506 + (TG)n Simple_repeat Simple_repeat 1 26 0 1889 150 38 46 chr3 94004836 94005203 -124031955 + THE1B LTR MaLR 1 364 0 297 280 0 0 chr3 94005379 94005454 -124031704 + CT-rich Low_complexity Low_complexity 2 76 0 613 321 32 43 chr3 94005530 94005807 -124031351 + L2 LINE L2 1716 1989 -1325 230 118 0 0 chr3 94006017 94006051 -124031107 - L1PA13 LINE L1 -92 6071 6038 * 483 226 8 16 chr3 94006039 94006163 -124030995 - L1M4 LINE L1 -1064 5082 4960 24 32 0 0 chr3 94006199 94006230 -124030928 + AT_rich Low_complexity Low_complexity 1 31 0 1023 283 55 65 chr3 94006400 94007339 -124029819 - L1M4c LINE L1 -4314 2249 1146 31 26 0 0 chr3 94007342 94007380 -124029778 + AT_rich Low_complexity Low_complexity 1 38 0 276 120 0 20 chr3 94008799 94008849 -124028309 + MADE1 DNA Mariner 1 49 -31 4520 152 66 5 chr3 94008916 94009754 -124027404 + L1MA6 LINE L1 5412 6300 0 985 240 34 5 chr3 94009919 94010123 -124027035 + MLT1A1 LTR MaLR 156 365 0 271 159 9 159 chr3 94010249 94010356 -124026802 - L2 LINE L2 -2 3311 3221 927 200 122 4 chr3 94010485 94010715 -124026443 + MLT1D LTR MaLR 249 505 0 182 371 0 0 chr3 94011068 94011130 -124026028 - L2 LINE L2 -2 3311 3250 597 313 45 32 chr3 94012353 94012599 -124024559 + MIR SINE MIR 11 259 -3 1844 181 19 60 chr3 94012601 94013021 -124024137 - MLT2D LTR ERVL -2 412 10 1481 237 42 6 chr3 94013027 94013364 -124023794 + MLT1A2 LTR MaLR 1 349 -25 536 283 103 13 chr3 94014511 94014797 -124022361 + L1ME LINE L1 5526 5737 -384 408 238 124 20 chr3 94015055 94015202 -124021956 + MIR SINE MIR 30 185 -77 198 326 11 45 chr3 94015575 94015664 -124021494 - L2 LINE L2 -1 3271 3186 396 327 56 0 chr3 94016092 94016254 -124020904 + MIR SINE MIR 81 251 -11 6357 58 5 5 chr3 94016348 94017157 -124020001 - L1PA6 LINE L1 0 6154 5346 630 148 36 71 chr3 94017259 94017455 -124019703 - Charlie5 DNA MER1_type -27 2585 2397 189 286 29 14 chr3 94017457 94017527 -124019631 + MIR SINE MIR 191 261 -1 3030 168 80 10 chr3 94018205 94018781 -124018377 + LTR26E LTR ERV1 7 622 0 570 274 19 94 chr3 94019142 94019354 -124017804 + MIR SINE MIR 12 207 -55 24 77 0 0 chr3 94019385 94019437 -124017721 + AT_rich Low_complexity Low_complexity 1 52 0 1732 201 0 3 chr3 94019469 94019783 -124017375 + MLT1A1 LTR MaLR 1 313 -52 1714 81 9 0 chr3 94019790 94020013 -124017145 - AluSc SINE Alu -14 295 71 1831 168 147 8 chr3 94020409 94020784 -124016374 - MSTA LTR MaLR -1 427 1 338 244 26 0 chr3 94020824 94020902 -124016256 + MLT1L LTR MaLR 315 394 -221 672 225 58 102 chr3 94021264 94021589 -124015569 - MER39 LTR ERV1 -140 567 257 303 28 0 0 chr3 94021964 94022000 -124015158 + (TG)n Simple_repeat Simple_repeat 1 36 0 393 278 28 0 chr3 94023634 94023742 -124013416 - MLT1I LTR MaLR -18 391 281 261 271 57 0 chr3 94023912 94023982 -124013176 - MLT1I LTR MaLR -238 171 98 2297 76 23 3 chr3 94024112 94024416 -124012742 + AluY SINE Alu 1 310 -1 299 300 11 11 chr3 94025010 94025100 -124012058 + L2 LINE L2 3174 3263 -9 240 314 34 54 chr3 94025932 94026136 -124011022 - L2 LINE L2 0 3313 3114 1250 282 65 34 chr3 94026237 94026626 -124010532 - MLT1L LTR MaLR -59 556 144 828 235 20 5 chr3 94026626 94026830 -124010328 - MER3 DNA MER1_type -2 207 1 1250 282 65 34 chr3 94026830 94026975 -124010183 - MLT1L LTR MaLR -471 144 5 232 318 45 19 chr3 94027064 94027218 -124009940 - L2 LINE L2 -870 2444 2287 307 268 18 18 chr3 94028125 94028237 -124008921 + (TA)n Simple_repeat Simple_repeat 2 113 0 235 304 22 22 chr3 94028238 94028330 -124008828 + L2 LINE L2 3147 3238 -75 2482 124 18 43 chr3 94028642 94029085 -124008073 - MSTB1 LTR MaLR 0 432 1 2467 82 0 0 chr3 94029154 94029458 -124007700 - AluSc SINE Alu -4 305 2 2835 19 0 0 chr3 94029496 94029813 -124007345 - AluYb8 SINE Alu -1 317 1 869 10 29 0 chr3 94030145 94030247 -124006911 + L1PA5 LINE L1 6039 6143 -11 28 0 0 0 chr3 94030247 94030275 -124006883 + AT_rich Low_complexity Low_complexity 1 28 0 246 32 0 0 chr3 94032217 94032248 -124004910 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1624 254 118 55 chr3 94233876 94234684 -123802474 + L1MC3 LINE L1 6241 7099 -686 458 184 0 23 chr3 94234685 94234772 -123802386 + MLT1F1 LTR MaLR 41 125 -442 576 213 113 0 chr3 94234772 94234913 -123802245 + L1MD3 LINE L1 7404 7560 -435 1710 79 0 9 chr3 94234931 94235158 -123802000 - AluSg/x SINE Alu -7 305 81 292 240 10 73 chr3 94235282 94235378 -123801780 + MIR SINE MIR 173 262 0 449 240 32 0 chr3 94235871 94235996 -123801162 + L1MB7 LINE L1 6046 6174 -10 219 139 0 0 chr3 94236859 94236895 -123800263 + (TG)n Simple_repeat Simple_repeat 2 37 0 333 263 119 8 chr3 94236903 94237021 -123800137 - MIR SINE MIR -130 132 2 374 373 83 6 chr3 94237470 94237821 -123799337 - MARNA DNA Mariner -61 525 148 2059 124 72 23 chr3 94238508 94238855 -123798303 - THE1B LTR MaLR 0 364 1 560 272 69 37 chr3 94239078 94239324 -123797834 - MLT1I LTR MaLR -40 369 116 286 210 30 90 chr3 94239433 94239533 -123797625 - MIR SINE MIR -50 212 119 976 325 91 38 chr3 94239708 94240367 -123796791 + L2 LINE L2 2071 2764 -550 443 305 39 107 chr3 94240524 94240888 -123796270 + L2 LINE L2 2928 3266 -6 324 175 62 0 chr3 94241382 94241462 -123795696 - L1MB3 LINE L1 -8 6175 6091 4508 150 22 8 chr3 94241469 94242396 -123794762 - L1MA4 LINE L1 -278 6022 5083 260 208 26 65 chr3 94244945 94245022 -123792136 - L3 LINE CR1 -178 1399 1326 192 340 0 0 chr3 94245180 94245227 -123791931 + MIR SINE MIR 110 156 -106 1783 154 0 31 chr3 94245416 94245550 -123791608 + AluJo SINE Alu 1 138 -167 1994 126 7 13 chr3 94245550 94245851 -123791307 + AluSx SINE Alu 1 299 -13 1783 154 0 31 chr3 94245851 94246030 -123791128 + AluJo SINE Alu 138 305 0 266 380 35 19 chr3 94246175 94246488 -123790670 + L2 LINE L2 2463 2780 -534 415 299 110 18 chr3 94247153 94247317 -123789841 + MIR3 SINE MIR 10 188 -20 36 23 0 0 chr3 94247632 94247675 -123789483 + AT_rich Low_complexity Low_complexity 1 43 0 348 152 0 0 chr3 94248028 94248094 -123789064 + (TA)n Simple_repeat Simple_repeat 1 66 0 1123 53 0 0 chr3 94248406 94248538 -123788620 - AluY SINE Alu -179 132 1 22 56 0 0 chr3 94249355 94249391 -123787767 + AT_rich Low_complexity Low_complexity 1 36 0 2192 176 110 36 chr3 94250234 94251016 -123786142 - Tigger3(Golem) DNA MER2_type -397 2632 1 22 35 0 0 chr3 94251648 94251677 -123785481 + AT_rich Low_complexity Low_complexity 1 29 0 2079 126 3 0 chr3 94251758 94252051 -123785107 - AluSg SINE Alu -16 294 1 443 139 13 0 chr3 94252648 94252727 -123784431 - L1PB4 LINE L1 -7 6149 6070 23 54 0 0 chr3 94253127 94253164 -123783994 + AT_rich Low_complexity Low_complexity 1 37 0 273 311 14 0 chr3 94253801 94253875 -123783283 + GA-rich Low_complexity Low_complexity 4 78 0 230 330 0 33 chr3 94254045 94254136 -123783022 + LTR33 LTR ERVL 10 97 -424 629 359 41 34 chr3 94254142 94254557 -123782601 + ERVL LTR ERVL 3298 3715 -2049 1638 312 86 34 chr3 94254586 94255547 -123781611 + ERVL LTR ERVL 3783 4793 -971 415 279 152 15 chr3 94256341 94256545 -123780613 + LTR33 LTR ERVL 40 271 -250 2015 149 133 16 chr3 94256762 94257145 -123780013 + MSTA LTR MaLR 1 428 0 421 255 69 0 chr3 94257292 94257394 -123779764 + L2 LINE L2 3205 3313 0 1711 241 37 45 chr3 94257727 94258216 -123778942 + L2 LINE L2 2425 2909 -405 3315 119 11 41 chr3 94258216 94258747 -123778411 + MER1A DNA MER1_type 15 529 0 225 349 108 0 chr3 94258752 94258881 -123778277 + L2 LINE L2 2914 3056 -257 313 347 98 17 chr3 94260034 94260207 -123776951 + MIR3 SINE MIR 22 208 0 1913 131 3 3 chr3 94260408 94260732 -123776426 - AluSx SINE Alu 0 324 1 28 0 0 0 chr3 94260770 94260798 -123776360 + AT_rich Low_complexity Low_complexity 1 28 0 833 266 50 17 chr3 94260811 94261052 -123776106 - MIR SINE MIR -1 261 13 2154 95 7 0 chr3 94261072 94261387 -123775771 - AluSp SINE Alu 0 317 1 1924 155 0 0 chr3 94261683 94261967 -123775191 - AluSx SINE Alu -26 286 3 237 65 0 0 chr3 94262707 94262785 -123774373 + (TG)n Simple_repeat Simple_repeat 1 109 0 237 65 0 0 chr3 94262785 94262816 -123774342 + (TG)n Simple_repeat Simple_repeat 2 32 0 4259 21 2 5 chr3 94263149 94263666 -123773492 + L1HS LINE L1 5645 6154 -1 246 148 0 0 chr3 94263667 94263721 -123773437 + (A)n Simple_repeat Simple_repeat 1 54 0 186 43 0 0 chr3 94263958 94263981 -123773177 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 441 288 49 57 chr3 94264134 94264398 -123772760 - MIR SINE MIR 0 262 1 23 0 0 0 chr3 94264595 94264618 -123772540 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr3 94265047 94265079 -123772079 + AT_rich Low_complexity Low_complexity 1 32 0 259 297 131 28 chr3 94265857 94266002 -123771156 + MIR3 SINE MIR 6 165 -43 241 261 43 11 chr3 94266100 94266192 -123770966 - L1MC4 LINE L1 -1337 6705 6611 198 322 140 7 chr3 94266258 94266401 -123770757 - L2 LINE L2 -1 3312 3151 219 337 157 11 chr3 94266700 94266789 -123770369 + L2 LINE L2 3123 3224 -48 354 261 109 43 chr3 94268260 94268398 -123768760 - L2 LINE L2 -4 3309 3163 183 277 0 21 chr3 94268421 94268468 -123768690 + L2 LINE L2 3258 3303 -10 267 248 102 105 chr3 94269685 94269999 -123767159 + MLT1H LTR MaLR 57 369 -180 28 29 0 0 chr3 94270099 94270134 -123767024 + AT_rich Low_complexity Low_complexity 1 35 0 32 43 0 0 chr3 94271418 94271464 -123765694 + AT_rich Low_complexity Low_complexity 1 46 0 188 345 101 8 chr3 94272058 94272177 -123764981 + L2 LINE L2 3182 3311 -2 271 291 43 26 chr3 94273733 94273850 -123763308 + MLT1L LTR MaLR 4 122 -493 2238 119 3 3 chr3 94273851 94274195 -123762963 - pTR5 LTR ERV1 -2046 392 49 267 233 0 23 chr3 94274195 94274281 -123762877 - LTR30 LTR ERV1 -98 624 541 407 72 133 48 chr3 94274282 94274365 -123762793 - pTR5 LTR ERV1 -417 2021 1932 25 0 0 0 chr3 94275062 94275087 -123762071 + AT_rich Low_complexity Low_complexity 1 25 0 268 283 142 47 chr3 94275290 94275396 -123761762 + L2 LINE L2 3182 3297 -16 212 256 0 31 chr3 94275923 94276052 -123761106 + GA-rich Low_complexity Low_complexity 3 127 0 300 281 100 22 chr3 94276200 94276416 -123760742 - LTR33 LTR ERVL -256 265 3 430 264 34 23 chr3 94276594 94276827 -123760331 + MER41B LTR ERV1 50 419 -216 2387 165 41 9 chr3 94276963 94277430 -123759728 + L1MB7 LINE L1 5683 6164 -20 2833 139 73 49 chr3 94278641 94279071 -123758087 - MER21A LTR ERV1 -6 925 478 2210 94 0 3 chr3 94279071 94279369 -123757789 - AluY SINE Alu -14 297 1 2833 139 73 49 chr3 94279369 94279470 -123757688 - MER21A LTR ERV1 -453 478 381 1314 178 42 12 chr3 94279450 94279709 -123757449 - MER21A LTR ERV1 -651 280 14 * 9803 36 2 3 chr3 94279873 94281337 -123755821 - L1P2 LINE L1 -493 5662 4199 440 339 22 11 chr3 94282776 94282956 -123754202 - MIR3 SINE MIR -7 201 20 213 241 17 17 chr3 94283800 94283858 -123753300 + MIR SINE MIR 91 148 -114 2099 125 6 6 chr3 94284288 94284600 -123752558 - AluSx SINE Alu 0 312 1 500 271 95 49 chr3 94285332 94285616 -123751542 + L2 LINE L2 3016 3312 -1 2382 95 0 0 chr3 94285724 94286028 -123751130 - AluSc SINE Alu -5 304 1 2550 117 43 2 chr3 94286151 94286571 -123750587 + LTR23 LTR ERV1 1 437 0 25 51 0 0 chr3 94286600 94286639 -123750519 + AT_rich Low_complexity Low_complexity 1 39 0 234 224 35 47 chr3 94287126 94287211 -123749947 + MER112 DNA MER1_type 145 228 -32 185 257 0 0 chr3 94288028 94288063 -123749095 - MER5B DNA MER1_type 0 178 144 * 478 172 81 10 chr3 94288061 94288160 -123748998 + MER5B DNA MER1_type 72 177 -1 745 178 14 0 chr3 94288704 94288850 -123748308 + MER69 DNA AcHobo 2379 2526 0 192 346 55 31 chr3 94289348 94289475 -123747683 - MIR SINE MIR -129 133 4 22 0 0 0 chr3 94290381 94290403 -123746755 + AT_rich Low_complexity Low_complexity 1 22 0 252 0 0 0 chr3 94290625 94290653 -123746505 + (T)n Simple_repeat Simple_repeat 1 28 0 421 21 0 0 chr3 94290769 94290817 -123746341 - THE1B LTR MaLR -316 48 1 815 153 13 20 chr3 94290996 94291146 -123746012 + MLT1A1 LTR MaLR 4 152 -213 482 224 86 9 chr3 94291158 94291274 -123745884 + FLAM_A SINE Alu 5 129 -13 1058 236 10 5 chr3 94291285 94291493 -123745665 + MLT1A1 LTR MaLR 157 365 0 885 299 103 3 chr3 94291495 94291826 -123745332 - HERVL LTR ERVL -3038 2616 2253 2690 29 0 3 chr3 94291931 94292240 -123744918 - AluYa5 SINE Alu -3 308 1 554 319 0 16 chr3 94293380 94293565 -123743593 + MIR SINE MIR 6 187 -75 233 288 0 0 chr3 94293608 94293667 -123743491 + (CTA)n Simple_repeat Simple_repeat 1 59 0 1362 113 35 74 chr3 94294581 94294632 -123742526 - THE1C LTR MaLR 0 375 324 2296 92 3 0 chr3 94294632 94294927 -123742231 - AluSq SINE Alu -14 299 4 1362 113 35 74 chr3 94294927 94295131 -123742027 - THE1C LTR MaLR -51 324 130 396 200 0 0 chr3 94295626 94295711 -123741447 + GA-rich Low_complexity Low_complexity 2 86 0 246 319 58 0 chr3 94295715 94295784 -123741374 - MER91A DNA MER1_type 0 196 124 1206 119 11 0 chr3 94295784 94295960 -123741198 - AluSg/x SINE Alu -14 298 121 2797 25 0 0 chr3 94295978 94296292 -123740866 - AluYb8 SINE Alu -3 315 2 258 354 49 14 chr3 94296525 94296669 -123740489 - L2 LINE L2 -2113 1201 1053 612 263 163 4 chr3 94296710 94296950 -123740208 + MLT1L LTR MaLR 1 278 -337 5678 105 155 92 chr3 94297000 94298454 -123738704 + pTR5 LTR ERV1 741 2438 0 392 267 67 0 chr3 94298467 94298572 -123738586 + MLT1L LTR MaLR 351 462 -153 2059 129 0 3 chr3 94298689 94298983 -123738175 + AluSg SINE Alu 1 293 -17 1691 166 45 6 chr3 94299164 94299496 -123737662 - L1MB8 LINE L1 -6 6172 5828 2174 197 30 17 chr3 94299898 94300359 -123736799 + MLT1C LTR MaLR 1 467 0 462 308 170 37 chr3 94300395 94301093 -123736065 + L2 LINE L2 2534 3312 -1 454 349 67 36 chr3 94301250 94301588 -123735570 - L2 LINE L2 -256 3057 2708 353 237 72 0 chr3 94301606 94301703 -123735455 + MER5A DNA MER1_type 11 114 -75 210 177 65 65 chr3 94301676 94301738 -123735420 - MER5B DNA MER1_type -116 62 1 * 313 318 54 14 chr3 94301743 94301891 -123735267 - L2 LINE L2 -639 2675 2522 293 313 20 10 chr3 94301900 94301999 -123735159 - L2 LINE L2 -986 2328 2229 21 0 0 0 chr3 94302026 94302047 -123735111 + AT_rich Low_complexity Low_complexity 1 21 0 318 289 183 53 chr3 94303276 94303692 -123733466 + L1M2 LINE L1 677 1146 -5703 32 0 0 0 chr3 94304417 94304449 -123732709 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr3 94305121 94305142 -123732016 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 94310142 94310166 -123726992 + AT_rich Low_complexity Low_complexity 1 24 0 703 303 40 60 chr3 94310671 94311024 -123726134 + L2 LINE L2 2950 3295 -18 555 324 64 28 chr3 94311645 94312037 -123725121 - MLT1J LTR MaLR -37 474 69 1692 198 40 20 chr3 94312130 94312479 -123724679 + MLT1A1 LTR MaLR 10 365 0 205 360 100 0 chr3 94313056 94313156 -123724002 - L2 LINE L2 0 3313 3204 26 50 0 0 chr3 94313387 94313427 -123723731 + AT_rich Low_complexity Low_complexity 1 40 0 272 286 44 11 chr3 94316343 94316434 -123720724 - MLT2F LTR ERVL -2 661 568 970 119 0 0 chr3 94316485 94316619 -123720539 - LTR8 LTR ERV1 0 691 558 207 0 0 0 chr3 94317003 94317026 -123720132 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5744 44 6 11 chr3 94317363 94318088 -123719070 + L1PA5 LINE L1 5433 6153 -1 333 409 7 0 chr3 94318362 94318516 -123718642 - L3 LINE CR1 -415 1162 1008 583 264 6 71 chr3 94318933 94319115 -123718043 + MER63B DNA MER1_type 2 171 -265 297 299 0 0 chr3 94319230 94319307 -123717851 + MER63 DNA MER1_type 720 796 -265 440 160 0 0 chr3 94319308 94319383 -123717775 - MLT1A1 LTR MaLR 0 365 291 1649 164 0 4 chr3 94319386 94319642 -123717516 + AluSx SINE Alu 30 284 -28 636 110 17 17 chr3 94319672 94319790 -123717368 + (GGAA)n Simple_repeat Simple_repeat 2 119 0 252 0 0 0 chr3 94319790 94319818 -123717340 + (CAAG)n Simple_repeat Simple_repeat 2 29 0 1298 184 11 64 chr3 94319818 94319940 -123717218 - MLT1A1 LTR MaLR -98 267 140 2103 145 0 0 chr3 94319940 94320244 -123716914 - AluSx SINE Alu -6 306 3 1298 184 11 64 chr3 94320244 94320403 -123716755 - MLT1A1 LTR MaLR -225 140 1 922 193 88 24 chr3 94320404 94320653 -123716505 + MER63 DNA MER1_type 788 1052 -8 444 304 116 24 chr3 94320660 94321000 -123716158 + L3 LINE CR1 1224 1564 -13 229 0 83 0 chr3 94323013 94323049 -123714109 + T-rich Low_complexity Low_complexity 2 40 0 540 183 95 15 chr3 94323054 94323191 -123713967 - L1MA10 LINE L1 -7 6327 6180 1985 146 7 0 chr3 94323197 94323491 -123713667 - AluSx SINE Alu -16 296 1 30 0 0 0 chr3 94324597 94324627 -123712531 + AT_rich Low_complexity Low_complexity 1 30 0 5393 155 29 23 chr3 94324698 94325911 -123711247 + L1MA4 LINE L1 4407 5635 -665 1512 151 72 77 chr3 94325911 94326288 -123710870 - THE1C LTR MaLR 0 375 1 5393 155 29 23 chr3 94326288 94326957 -123710201 + L1MA4 LINE L1 5635 6298 -2 360 258 149 25 chr3 94327383 94327546 -123709612 - MIR SINE MIR -65 143 2 28 0 0 0 chr3 94327798 94327826 -123709332 + AT_rich Low_complexity Low_complexity 1 28 0 262 272 82 27 chr3 94328133 94328280 -123708878 - MER103 DNA DNA -9 157 3 209 326 20 41 chr3 94328396 94328494 -123708664 - MIR3 SINE MIR -104 104 9 181 294 0 0 chr3 94329192 94329243 -123707915 + L2 LINE L2 3259 3309 -4 1538 155 7 40 chr3 94329591 94329868 -123707290 + AluJo SINE Alu 32 299 -13 2213 181 47 5 chr3 94331701 94332110 -123705048 + MSTB LTR MaLR 1 426 0 2785 182 2 0 chr3 94332110 94332604 -123704554 + MSTB-int LTR MaLR 1 495 -1156 1377 194 34 31 chr3 94332606 94332900 -123704258 + MSTB LTR MaLR 132 426 0 640 235 7 0 chr3 94333169 94333318 -123703840 - MIR SINE MIR -2 260 111 301 258 43 0 chr3 94333881 94333974 -123703184 - MLT1J1 LTR MaLR -4 442 346 184 267 12 81 chr3 94334134 94334220 -123702938 + L2 LINE L2 3151 3230 -42 536 315 116 32 chr3 94334241 94334647 -123702511 + LTR67 LTR ERVL 111 550 -7 351 0 0 0 chr3 94334710 94334749 -123702409 + (TG)n Simple_repeat Simple_repeat 1 39 0 197 65 32 0 chr3 94335903 94335934 -123701224 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 2083 234 40 58 chr3 94336773 94337371 -123699787 + MLT1E LTR MaLR 1 587 -6 2626 3 0 0 chr3 94339195 94339528 -123697630 - AluYa5 SINE Alu 0 333 1 1097 274 74 31 chr3 94339613 94340098 -123697060 - MLT1L LTR MaLR -2 613 108 3037 153 50 41 chr3 94340098 94340784 -123696374 + pTR5 LTR ERV1 757 1448 -990 4931 157 4 24 chr3 94340886 94341870 -123695288 - L1 LINE L1 -1048 5098 4135 363 261 108 57 chr3 94342706 94342863 -123694295 + MIR SINE MIR 54 218 -44 2047 100 47 0 chr3 94344847 94345126 -123692032 + AluSg SINE Alu 2 293 -17 1221 97 0 0 chr3 94345126 94345367 -123691791 + (TA)n Simple_repeat Simple_repeat 1 241 0 3659 186 69 65 chr3 94346099 94346856 -123690302 - L1MD2 LINE L1 -21 6338 5585 2369 88 3 0 chr3 94346856 94347164 -123689994 - AluSc SINE Alu 0 309 1 3659 186 69 65 chr3 94347164 94347254 -123689904 - L1MD2 LINE L1 -774 5585 5497 2372 75 0 10 chr3 94347254 94347562 -123689596 - AluY SINE Alu -6 305 1 3659 186 69 65 chr3 94347562 94347755 -123689403 - L1MD2 LINE L1 -862 5497 5293 1803 149 3 27 chr3 94347761 94347907 -123689251 - AluSx SINE Alu -18 294 157 2707 83 53 16 chr3 94347907 94348339 -123688819 - LTR7 LTR ERV1 -2 448 1 1803 149 3 27 chr3 94348339 94348493 -123688665 - AluSx SINE Alu -155 157 1 1188 234 3 19 chr3 94348493 94348861 -123688297 - L1MD2 LINE L1 -850 5296 4935 25 31 0 0 chr3 94349291 94349323 -123687835 + AT_rich Low_complexity Low_complexity 1 32 0 1691 179 14 3 chr3 94349331 94349621 -123687537 + AluJo SINE Alu 1 293 -19 366 204 88 48 chr3 94350141 94350288 -123686870 - Charlie5 DNA MER1_type -102 2510 2358 344 203 27 0 chr3 94350395 94350469 -123686689 - MER5A DNA MER1_type -105 84 9 1412 181 87 0 chr3 94351456 94351754 -123685404 - MER33 DNA MER1_type 0 324 1 323 123 77 41 chr3 94354009 94354179 -123682979 + (TA)n Simple_repeat Simple_repeat 2 177 0 252 0 0 0 chr3 94355101 94355129 -123682029 + (TG)n Simple_repeat Simple_repeat 1 28 0 180 0 0 0 chr3 94355442 94355462 -123681696 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1943 151 3 0 chr3 94355668 94355952 -123681206 - AluJo SINE Alu -27 285 1 627 259 103 29 chr3 94356591 94356675 -123680483 + MIR SINE MIR 1 77 -185 1753 219 3 16 chr3 94356675 94357044 -123680114 + MLT1A1 LTR MaLR 1 364 -1 627 259 103 29 chr3 94357044 94357202 -123679956 + MIR SINE MIR 77 261 -1 3253 11 0 0 chr3 94357380 94357745 -123679413 + L1P1 LINE L1 5392 5756 -399 248 334 242 7 chr3 94357851 94358153 -123679005 + L2 LINE L2 2398 2770 -544 480 329 82 59 chr3 94358463 94359171 -123677987 + MERVL LTR ERVL 1000 1723 -4041 993 303 125 11 chr3 94359221 94359852 -123677306 + MERVL LTR ERVL 1776 2519 -3245 598 140 0 11 chr3 94359862 94359955 -123677203 - Tigger7 DNA MER2_type -5 2482 2391 * 1357 204 8 4 chr3 94359953 94360193 -123676965 - Tigger7 DNA MER2_type -2220 267 27 298 335 69 13 chr3 94360209 94360510 -123676648 + MERVL LTR ERVL 2505 2772 -2713 23 33 0 0 chr3 94361482 94361512 -123675646 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr3 94361541 94361569 -123675589 + AT_rich Low_complexity Low_complexity 1 28 0 217 253 66 33 chr3 94361755 94361846 -123675312 - MIR SINE MIR -83 179 86 183 143 0 0 chr3 94361909 94361937 -123675221 + L2 LINE L2 3257 3284 -29 1273 233 45 45 chr3 94362476 94362850 -123674308 + MLT1A2 LTR MaLR 1 374 0 278 324 67 0 chr3 94363095 94363200 -123673958 - MIR SINE MIR -38 224 113 231 314 39 20 chr3 94363308 94363410 -123673748 - L2 LINE L2 -10 3303 3200 334 359 23 8 chr3 94363537 94363668 -123673490 + L2 LINE L2 3140 3272 0 237 252 15 104 chr3 94364220 94364355 -123672803 + L2 LINE L2 2959 3081 -191 243 0 0 0 chr3 94364711 94364738 -123672420 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 7356 33 11 0 chr3 94364738 94365934 -123671224 - L1PA5 LINE L1 -11 6143 4939 1300 97 5 0 chr3 94365934 94366120 -123671038 + L1PA5 LINE L1 4748 4934 -1212 180 250 36 36 chr3 94366474 94366530 -123670628 + L2 LINE L2 3204 3259 -54 302 341 85 0 chr3 94366887 94367016 -123670142 - MIR SINE MIR -71 191 52 38 16 0 47 chr3 94367064 94367128 -123670030 + AT_rich Low_complexity Low_complexity 1 61 0 1465 61 0 0 chr3 94367132 94367312 -123669846 + AluY SINE Alu 129 308 -3 447 318 77 12 chr3 94368262 94368563 -123668595 + MER102b DNA MER1_type 2 303 -38 508 300 80 47 chr3 94368679 94369045 -123668113 - L1MC4a LINE L1 -297 5824 5477 230 274 0 0 chr3 94369073 94369157 -123668001 - L1P4 LINE L1 -729 5437 5354 24 32 0 0 chr3 94369177 94369208 -123667950 + AT_rich Low_complexity Low_complexity 1 31 0 302 315 158 0 chr3 94369526 94369672 -123667486 - HAL1b LINE L1 -1 1347 1179 548 282 100 50 chr3 94369740 94370662 -123666496 - HAL1b LINE L1 -283 1065 12 1136 191 0 5 chr3 94371319 94371523 -123665635 + MER58A DNA MER1_type 22 224 0 1230 199 15 8 chr3 94372952 94373218 -123663940 + L1ME1 LINE L1 5890 6157 -9 1268 195 68 11 chr3 94373271 94373530 -123663628 - Charlie5 DNA MER1_type 0 2624 2336 1805 174 26 15 chr3 94373530 94373870 -123663288 + MER2 DNA MER2_type 1 344 0 1268 195 68 11 chr3 94373870 94373980 -123663178 - Charlie5 DNA MER1_type -288 2336 2234 572 181 0 31 chr3 94373981 94374108 -123663050 - Charlie5 DNA MER1_type -2489 123 1 378 0 0 0 chr3 94375388 94375430 -123661728 + (CA)n Simple_repeat Simple_repeat 2 43 0 523 186 51 59 chr3 94375626 94375744 -123661414 + FLAM_C SINE Alu 2 118 -15 199 27 27 54 chr3 94375749 94375786 -123661372 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 876 207 125 34 chr3 94376902 94377197 -123659961 + MER5C DNA MER1_type 3 324 0 850 281 58 24 chr3 94377343 94377635 -123659523 - MLT1I LTR MaLR -36 373 72 2908 99 32 5 chr3 94377659 94378091 -123659067 + MLT2A1 LTR ERVL 1 444 0 1481 112 0 15 chr3 94378410 94378615 -123658543 + AluSc SINE Alu 91 292 -17 1119 198 102 0 chr3 94378628 94378911 -123658247 + L1MD3 LINE L1 7667 7978 -17 27 49 0 0 chr3 94379095 94379136 -123658022 + AT_rich Low_complexity Low_complexity 1 41 0 383 106 15 0 chr3 94380393 94380459 -123656699 + (TA)n Simple_repeat Simple_repeat 1 67 0 2615 258 130 7 chr3 94380568 94381486 -123655672 + L1MEc LINE L1 35 1065 -5331 311 247 0 0 chr3 94381560 94381637 -123655521 + L1MEc LINE L1 2297 2373 -4023 2317 110 0 0 chr3 94381694 94382004 -123655154 + AluSg SINE Alu 1 310 0 380 315 213 10 chr3 94382006 94382203 -123654955 + MIR SINE MIR 26 262 0 266 318 127 69 chr3 94383073 94383419 -123653739 + L2 LINE L2 1759 2124 -1190 2723 99 5 0 chr3 94383486 94383859 -123653299 - THE1C LTR MaLR 0 375 1 9093 100 36 120 chr3 94383861 94383897 -123653261 - THE1C-int LTR MaLR -2 1578 1541 2171 128 0 0 chr3 94383897 94384195 -123652963 - AluSx SINE Alu -14 298 1 9093 100 36 120 chr3 94384195 94385880 -123651278 - THE1C-int LTR MaLR -39 1541 1 2533 129 8 3 chr3 94385880 94385994 -123651164 - THE1C LTR MaLR 0 375 263 5095 118 31 8 chr3 94385994 94386756 -123650402 + LTR17 LTR ERV1 1 780 0 2533 129 8 3 chr3 94386756 94387014 -123650144 - THE1C LTR MaLR -112 263 1 525 312 104 15 chr3 94387024 94387350 -123649808 + L2 LINE L2 2431 2789 -525 3670 16 5 2 chr3 94387350 94387780 -123649378 - L1PA4 LINE L1 0 6155 5725 458 402 92 4 chr3 94387979 94388260 -123648898 + L2 LINE L2 2966 3271 -1 540 256 35 6 chr3 94389211 94389383 -123647775 + MER104 DNA MER2_type 1 177 -3 222 37 0 0 chr3 94389666 94389693 -123647465 + (CAGAGA)n Simple_repeat Simple_repeat 2 28 0 201 348 0 0 chr3 94389722 94389791 -123647367 + GA-rich Low_complexity Low_complexity 2 70 0 1725 165 0 0 chr3 94390912 94391172 -123645986 + AluJb SINE Alu 1 260 -52 2424 39 0 7 chr3 94391663 94391977 -123645181 - AluY SINE Alu 0 312 1 210 314 0 0 chr3 94393103 94393154 -123644004 - L2 LINE L2 -12 3301 3251 369 307 8 39 chr3 94393289 94393416 -123643742 - MIR SINE MIR -122 140 18 448 304 20 27 chr3 94393449 94393597 -123643561 + MIR SINE MIR 114 260 -2 26 0 0 0 chr3 94393693 94393719 -123643439 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr3 94393797 94393820 -123643338 + AT_rich Low_complexity Low_complexity 1 23 0 783 264 48 74 chr3 94394624 94395044 -123642114 + MLT1I LTR MaLR 1 409 0 807 21 0 0 chr3 94395438 94395534 -123641624 + L1P LINE L1 4986 5081 -1065 1315 169 84 84 chr3 94395993 94396336 -123640822 - MLT1A1 LTR MaLR 0 365 23 27 0 0 0 chr3 94396579 94396606 -123640552 + AT_rich Low_complexity Low_complexity 1 27 0 1535 145 83 28 chr3 94396748 94397037 -123640121 + AluSx SINE Alu 2 306 -6 2155 100 7 0 chr3 94397101 94397414 -123639744 + AluSx SINE Alu 1 315 0 646 296 0 11 chr3 94398572 94398751 -123638407 + MER69A DNA AcHobo 1 177 0 206 261 203 0 chr3 94399545 94399614 -123637544 + L2 LINE L2 3230 3312 -1 2257 100 3 0 chr3 94399895 94400194 -123636964 - AluSq SINE Alu -13 300 1 1039 39 0 0 chr3 94400332 94400462 -123636696 - L1PA4 LINE L1 0 6155 6026 318 254 14 0 chr3 94500465 94500536 -123536622 - MER63 DNA MER1_type -310 751 680 3267 114 11 2 chr3 94501535 94501989 -123535169 - MER1A DNA MER1_type 0 529 72 727 353 69 15 chr3 94503483 94503891 -123533267 + LTR16A LTR ERVL 16 445 -5 1454 339 44 28 chr3 94503973 94504763 -123532395 + HERV16 LTR ERVL 91 893 -4103 755 329 51 14 chr3 94504791 94505144 -123532014 + HERV16 LTR ERVL 986 1351 -3645 1142 304 28 34 chr3 94505291 94505764 -123531394 + HERV16 LTR ERVL 1578 2047 -2949 802 246 133 55 chr3 94505832 94506125 -123531033 + HERV16 LTR ERVL 2159 2474 -2522 935 228 31 27 chr3 94506128 94506387 -123530771 - MER96B DNA MER1_type? -157 260 1 1097 321 105 47 chr3 94506392 94508028 -123529130 + HERV16 LTR ERVL 2499 4291 -1473 549 352 76 40 chr3 94508358 94508844 -123528314 + HERV16 LTR ERVL 4770 5282 -482 1873 103 3 59 chr3 94508844 94509134 -123528024 - AluSx SINE Alu -22 290 17 549 352 76 40 chr3 94509134 94509223 -123527935 + HERV16 LTR ERVL 5282 5366 -398 627 301 61 12 chr3 94509340 94509720 -123527438 + LTR16A LTR ERVL 2 444 -6 279 383 27 27 chr3 94509931 94510080 -123527078 + MIR3 SINE MIR 39 187 -21 573 301 49 0 chr3 94510407 94510550 -123526608 - L2 LINE L2 0 3272 3123 23 0 0 0 chr3 94511554 94511577 -123525581 + AT_rich Low_complexity Low_complexity 1 23 0 1530 248 56 14 chr3 94511781 94512370 -123524788 + MER114 LTR ERV 16 629 -19 1794 180 138 5 chr3 94512431 94512809 -123524349 + MSTA LTR MaLR 1 428 0 887 219 19 47 chr3 94513320 94513535 -123523623 - MER63A DNA MER1_type -1 209 1 1809 211 68 31 chr3 94514502 94514985 -123522173 - MLT1D LTR MaLR -4 501 1 21 57 0 0 chr3 94515933 94515968 -123521190 + AT_rich Low_complexity Low_complexity 1 35 0 34 55 0 0 chr3 94516133 94516188 -123520970 + AT_rich Low_complexity Low_complexity 1 55 0 1565 218 96 14 chr3 94516208 94516634 -123520524 - MLT1C LTR MaLR -4 463 3 781 171 0 21 chr3 94517005 94517145 -123520013 + FLAM_C SINE Alu 1 137 -6 1512 173 45 14 chr3 94517594 94517883 -123519275 - AluJo SINE Alu -12 300 3 196 269 143 12 chr3 94519087 94519202 -123517956 + MIR SINE MIR 17 152 -62 1614 201 116 80 chr3 94519895 94520648 -123516510 - LTR1B LTR ERV1 0 826 1 33 25 0 0 chr3 94521880 94521920 -123515238 + AT_rich Low_complexity Low_complexity 1 40 0 219 69 0 0 chr3 94522307 94522336 -123514822 + (CAT)n Simple_repeat Simple_repeat 2 30 0 2361 88 0 3 chr3 94522890 94523198 -123513960 + AluSq SINE Alu 1 307 -6 249 327 20 20 chr3 94523416 94523517 -123513641 + MIR SINE MIR 5 105 -157 3728 211 5 35 chr3 94523771 94524711 -123512447 - L1 LINE L1 -1250 4896 3985 1602 241 119 31 chr3 94524712 94525231 -123511927 - L1ME3A LINE L1 -3 6167 5603 412 145 76 0 chr3 94525234 94525379 -123511779 + (TA)n Simple_repeat Simple_repeat 2 157 0 235 308 0 0 chr3 94525380 94525471 -123511687 - L1MC4 LINE L1 -1339 6703 6613 369 268 164 30 chr3 94525483 94525714 -123511444 - L1ME3A LINE L1 -585 5579 5318 247 328 16 8 chr3 94525734 94525856 -123511302 - L1ME3A LINE L1 -1217 4929 4807 528 351 119 33 chr3 94526360 94527123 -123510035 - L2 LINE L2 -2154 1160 332 236 346 70 56 chr3 94527499 94527713 -123509445 - L2 LINE L2 -640 2674 2458 192 346 76 67 chr3 94528302 94528643 -123508515 - L2 LINE L2 -937 2377 2034 396 320 32 6 chr3 94529520 94529676 -123507482 + MIR SINE MIR 48 207 -55 409 308 64 34 chr3 94530260 94530494 -123506664 + MARNA DNA Mariner 223 463 -123 759 252 62 12 chr3 94530501 94530743 -123506415 - MIR SINE MIR -3 259 6 21 0 0 0 chr3 94531119 94531140 -123506018 + AT_rich Low_complexity Low_complexity 1 21 0 1829 157 4 0 chr3 94531944 94532264 -123504894 + AluSx SINE Alu 1 321 0 21 104 0 0 chr3 94532462 94532539 -123504619 + AT_rich Low_complexity Low_complexity 1 77 0 521 343 11 0 chr3 94532602 94532780 -123504378 + MIR SINE MIR 58 237 -25 693 312 91 20 chr3 94536136 94536533 -123500625 + MLT1L LTR MaLR 190 614 -1 652 267 144 28 chr3 94537018 94537508 -123499650 + MLT1F LTR MaLR 12 551 -4 1606 126 140 14 chr3 94539405 94539683 -123497475 - AluSq SINE Alu 0 313 1 1077 219 81 44 chr3 94539855 94540238 -123496920 + MLT2C1 LTR ERVL 1 397 0 1563 169 7 36 chr3 94547897 94548204 -123488954 + AluJo SINE Alu 1 298 -14 276 320 111 4 chr3 94549542 94549786 -123487372 - L1ME LINE L1 -342 5779 5510 1403 252 64 29 chr3 94550645 94551101 -123486057 - MLT1F LTR MaLR -13 529 58 722 290 66 50 chr3 94551454 94552239 -123484919 + L1ME3A LINE L1 4037 4834 -1312 418 241 57 67 chr3 94552491 94552523 -123484635 + L1ME3A LINE L1 5313 5344 -826 1661 261 37 44 chr3 94552523 94553120 -123484038 + MLT1E LTR MaLR 1 593 0 418 241 57 67 chr3 94553120 94553369 -123483789 + L1ME3A LINE L1 5344 5591 -579 21 36 0 0 chr3 94553826 94553854 -123483304 + AT_rich Low_complexity Low_complexity 1 28 0 4591 127 46 78 chr3 94553912 94554205 -123482953 - L1PA16 LINE L1 -1 6165 5864 2438 48 0 22 chr3 94554205 94554518 -123482640 + AluY SINE Alu 1 306 -5 4591 127 46 78 chr3 94554518 94555194 -123481964 - L1PA16 LINE L1 -302 5864 5225 189 0 0 0 chr3 94556359 94556380 -123480778 + (A)n Simple_repeat Simple_repeat 1 21 0 497 157 11 0 chr3 94560762 94560943 -123476215 + L1MA4A LINE L1 6037 6280 -23 2109 134 0 3 chr3 94560965 94561272 -123475886 + AluSx SINE Alu 1 306 -6 26 0 0 0 chr3 94561272 94561298 -123475860 + AT_rich Low_complexity Low_complexity 1 26 0 515 246 142 45 chr3 94561458 94561726 -123475432 - MLT1H LTR MaLR -1 548 255 286 314 88 46 chr3 94562008 94562291 -123474867 + L2 LINE L2 2188 2482 -832 233 265 250 25 chr3 94562863 94562977 -123474181 + LTR50 LTR ERVL 544 631 -164 1989 130 0 19 chr3 94562977 94563285 -123473873 - AluSx SINE Alu -10 302 1 233 265 250 25 chr3 94563285 94563374 -123473784 + LTR50 LTR ERVL 631 793 -2 297 51 0 0 chr3 94564569 94564608 -123472550 + (TC)n Simple_repeat Simple_repeat 2 40 0 304 314 45 58 chr3 94565775 94565998 -123471160 + L1ME3A LINE L1 5645 5864 -298 1971 135 6 6 chr3 94566006 94566325 -123470833 - L1M2 LINE L1 -558 5733 5415 533 112 82 0 chr3 94566325 94566423 -123470735 + L1MA7 LINE L1 6185 6290 -1 224 329 165 6 chr3 94567566 94567724 -123469434 + MIR3 SINE MIR 8 190 -18 204 271 0 0 chr3 94568177 94568225 -123468933 + CT-rich Low_complexity Low_complexity 4 51 0 231 188 0 0 chr3 94569004 94569052 -123468106 + CT-rich Low_complexity Low_complexity 2 49 0 279 167 0 0 chr3 94571023 94571089 -123466069 + (TA)n Simple_repeat Simple_repeat 1 66 0 1083 278 43 52 chr3 94572443 94573005 -123464153 + MER68 LTR ERV1 2 558 -4 651 330 30 35 chr3 94573417 94573756 -123463402 + L1MEd LINE L1 426 762 -5357 5109 182 8 1 chr3 94574082 94575040 -123462118 - L1P LINE L1 -784 5362 4398 1439 275 163 12 chr3 94575041 94575110 -123462048 - L2 LINE L2 -1531 1783 1726 2102 118 7 0 chr3 94575110 94575414 -123461744 - AluSg SINE Alu -4 306 1 1439 275 163 12 chr3 94575414 94575915 -123461243 - L2 LINE L2 -1588 1726 1127 194 0 0 37 chr3 94576686 94576713 -123460445 + (TAAAAA)n Simple_repeat Simple_repeat 2 27 0 2151 284 113 38 chr3 94576740 94576900 -123460258 - L2 LINE L2 -2285 1029 882 1917 147 10 0 chr3 94576900 94577192 -123459966 - AluSx SINE Alu -17 295 1 2151 284 113 38 chr3 94577192 94577987 -123459171 - L2 LINE L2 -2432 882 2 2281 172 26 7 chr3 94579294 94579712 -123457446 + MSTB LTR MaLR 1 426 0 7901 192 11 14 chr3 94579712 94581194 -123455964 + MSTB-int LTR MaLR 1 1478 -173 2088 141 48 20 chr3 94581213 94581567 -123455591 + THE1B LTR MaLR 1 364 0 998 112 12 35 chr3 94581567 94581737 -123455421 + MSTB-int LTR MaLR 1486 1651 0 2053 169 61 20 chr3 94581737 94582146 -123455012 + MSTB LTR MaLR 1 426 0 180 308 26 0 chr3 94583081 94583159 -123453999 - L2 LINE L2 -363 2951 2872 1494 163 45 35 chr3 94583190 94583479 -123453679 - MLT2B1 LTR ERVL -228 292 1 2670 191 59 22 chr3 94583480 94584137 -123453021 - L1MC1 LINE L1 -459 5874 5193 3539 129 51 15 chr3 94584217 94584806 -123452352 + MER4B LTR ERV1 1 610 0 321 162 59 0 chr3 94587201 94587269 -123449889 + MLT1K LTR MaLR 513 584 -4 291 202 18 123 chr3 94588529 94588643 -123448515 + MIR SINE MIR 61 162 -100 744 191 105 0 chr3 94589562 94589714 -123447444 - FRAM SINE Alu 0 176 9 543 276 13 32 chr3 94591405 94591561 -123445597 - LTR33 LTR ERVL -368 153 1 411 56 0 0 chr3 94592120 94592174 -123444984 + (TG)n Simple_repeat Simple_repeat 1 54 0 284 235 29 0 chr3 94592178 94592246 -123444912 + MIR SINE MIR 187 256 -6 391 233 0 0 chr3 94592555 94592641 -123444517 - L1MC4 LINE L1 -1724 6318 6233 181 287 184 0 chr3 94594007 94594094 -123443064 + L3 LINE CR1 358 460 -1117 642 318 30 33 chr3 94594331 94594633 -123442525 + L3 LINE CR1 559 859 -718 418 169 0 0 chr3 94594945 94595016 -123442142 + MLT2B3 LTR ERVL 1 71 -483 2031 206 25 82 chr3 94595114 94595623 -123441535 + MLT2B3 LTR ERVL 75 554 0 1658 136 101 20 chr3 94595834 94596180 -123440978 + THE1C LTR MaLR 1 374 -1 520 289 75 46 chr3 94596534 94596814 -123440344 + MLT1I LTR MaLR 91 378 -31 277 255 184 0 chr3 94596971 94597069 -123440089 + L3 LINE CR1 1209 1324 -253 2212 100 0 34 chr3 94597541 94597862 -123439296 - AluSg SINE Alu 0 310 1 712 186 0 21 chr3 94597877 94598022 -123439136 - FLAM_C SINE Alu -1 142 1 207 255 0 0 chr3 94598062 94598113 -123439045 + MIR SINE MIR 156 206 -56 221 238 0 0 chr3 94598153 94598195 -123438963 + (CAT)n Simple_repeat Simple_repeat 3 44 0 1909 171 14 11 chr3 94598818 94599180 -123437978 - MLT1A1 LTR MaLR -2 363 1 769 219 13 71 chr3 94601815 94602039 -123435119 + MLT1B LTR MaLR 1 211 -179 10387 27 0 0 chr3 94602039 94603300 -123433858 - L1P LINE L1 -2525 3621 2361 530 31 0 0 chr3 94603400 94603465 -123433693 - L1P LINE L1 -3780 2366 2302 367 0 0 0 chr3 94604002 94604042 -123433116 + L1P LINE L1 3554 3593 -2553 1066 227 66 61 chr3 94604259 94604638 -123432520 - MLT1C LTR MaLR -53 414 34 187 289 0 0 chr3 94605844 94605889 -123431269 + MIR3 SINE MIR 158 202 -6 213 299 0 30 chr3 94606336 94606403 -123430755 + CT-rich Low_complexity Low_complexity 3 67 0 21 36 0 0 chr3 94606821 94606849 -123430309 + AT_rich Low_complexity Low_complexity 1 28 0 1714 169 72 171 chr3 94607040 94607846 -123429312 + LTR8A LTR ERV1 1 726 -1 344 188 29 0 chr3 94608054 94608123 -123429035 + L1MCa LINE L1 144 214 -6212 1204 122 10 36 chr3 94608128 94608324 -123428834 + THE1B LTR MaLR 174 364 0 262 282 36 9 chr3 94608324 94608434 -123428724 + L1ME4a LINE L1 5986 6098 -23 25 0 0 0 chr3 94608906 94608931 -123428227 + AT_rich Low_complexity Low_complexity 1 25 0 312 305 43 30 chr3 94609643 94609784 -123427374 + L1ME4a LINE L1 5778 5923 -198 1213 181 91 81 chr3 94609784 94610082 -123427076 + AluJb SINE Alu 1 301 -1 312 305 43 30 chr3 94610082 94610104 -123427054 + L1ME4a LINE L1 5923 5943 -178 1788 131 7 29 chr3 94610200 94610506 -123426652 + L1PA16 LINE L1 5867 6165 -1 35 41 0 0 chr3 94610545 94610594 -123426564 + AT_rich Low_complexity Low_complexity 1 49 0 258 32 0 0 chr3 94611122 94611153 -123426005 + (TG)n Simple_repeat Simple_repeat 1 31 0 180 77 0 0 chr3 94611152 94611178 -123425980 + (CAGAGA)n Simple_repeat Simple_repeat 5 30 0 * 1116 198 172 38 chr3 94612320 94612639 -123424519 + MLT1A1 LTR MaLR 1 362 -3 38 96 0 0 chr3 94612706 94612821 -123424337 + AT_rich Low_complexity Low_complexity 1 115 0 269 254 70 42 chr3 94613022 94613164 -123423994 + LTR16B LTR ERVL 3 148 -316 200 184 41 0 chr3 94613762 94613811 -123423347 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 181 95 24 24 chr3 94614385 94614427 -123422731 + (CAA)n Simple_repeat Simple_repeat 2 43 0 216 204 0 0 chr3 94614646 94614690 -123422468 + T-rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chr3 94615075 94615105 -123422053 + AT_rich Low_complexity Low_complexity 1 30 0 22 88 0 0 chr3 94615555 94615612 -123421546 + AT_rich Low_complexity Low_complexity 1 57 0 307 250 6 44 chr3 94616059 94616239 -123420919 + (CATATA)n Simple_repeat Simple_repeat 6 178 0 217 226 0 38 chr3 94616247 94616300 -123420858 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 241 236 22 34 chr3 94616304 94616393 -123420765 - L1MC4 LINE L1 -1341 6701 6614 2029 150 0 0 chr3 94616680 94616980 -123420178 - AluSx SINE Alu -12 300 1 200 273 73 0 chr3 94617893 94617948 -123419210 + MER5A DNA MER1_type 90 148 -41 4960 164 49 15 chr3 94617956 94619381 -123417777 + L1MA8 LINE L1 4818 6291 0 196 308 50 75 chr3 94619624 94619744 -123417414 + MIR SINE MIR 22 138 -124 2325 87 56 0 chr3 94619866 94620256 -123416902 - L1PA4 LINE L1 0 6155 5744 263 237 11 0 chr3 94620369 94620462 -123416696 + (TATATG)n Simple_repeat Simple_repeat 6 99 0 297 338 61 30 chr3 94620497 94620695 -123416463 - L2 LINE L2 -1340 1974 1771 8864 116 13 2 chr3 94620980 94622248 -123414910 - HSMAR1 DNA Mariner -5 1282 1 1860 165 38 25 chr3 94622342 94622857 -123414301 - Charlie1 DNA MER1_type -127 2634 2079 251 93 23 0 chr3 94623026 94623069 -123414089 + (CA)n Simple_repeat Simple_repeat 1 44 0 834 178 82 58 chr3 94623102 94623321 -123413837 + MER20 DNA MER1_type 2 219 0 225 256 96 72 chr3 94625622 94625695 -123411463 - LTR67 LTR ERVL -2 555 476 297 0 0 0 chr3 94625695 94625728 -123411430 + (CA)n Simple_repeat Simple_repeat 2 34 0 225 256 96 72 chr3 94625728 94625779 -123411379 - LTR67 LTR ERVL -81 476 428 1140 311 86 20 chr3 94626135 94626624 -123410534 + LTR33 LTR ERVL 1 521 0 215 245 19 0 chr3 94626840 94626893 -123410265 + A-rich Low_complexity Low_complexity 1 54 0 440 320 137 21 chr3 94627631 94627865 -123409293 + LTR16C LTR ERVL 1 261 -230 303 307 55 0 chr3 94627919 94628046 -123409112 + LTR16C LTR ERVL 350 483 -8 475 318 29 6 chr3 94628684 94628857 -123408301 + HERVL LTR ERVL 942 1118 -3878 608 191 15 0 chr3 94629124 94629255 -123407903 - L1MA5 LINE L1 -141 6159 6027 380 365 85 25 chr3 94629389 94629742 -123407416 + HERVL LTR ERVL 4249 4622 -1032 710 312 62 29 chr3 94629807 94630147 -123407011 + HERVL LTR ERVL 4776 5126 -638 2491 167 9 19 chr3 94630172 94630604 -123406554 - MSTA LTR MaLR 0 428 1 677 314 35 35 chr3 94631016 94631303 -123405855 + LTR16C LTR ERVL 87 373 -118 6138 58 18 101 chr3 94632443 94634064 -123403094 - L1PA7 LINE L1 0 6154 4636 434 197 17 0 chr3 94634424 94634541 -123402617 + L1MA7 LINE L1 6173 6291 0 216 350 133 33 chr3 94634583 94634703 -123402455 - L2 LINE L2 -19 3253 3122 1365 257 144 10 chr3 94635572 94636171 -123400987 + L1M4 LINE L1 4604 5282 -864 15005 159 14 26 chr3 94636171 94640226 -123396932 + L1PA16 LINE L1 2 4240 -2221 1121 99 12 0 chr3 94640252 94640454 -123396704 + L1P LINE L1 5540 5743 -703 2046 99 7 0 chr3 94640460 94640743 -123396415 + L1P LINE L1 1 285 -5861 3559 169 21 19 chr3 94640884 94641962 -123395196 + L1PA16 LINE L1 5202 6472 -9 382 245 144 75 chr3 94643206 94643394 -123393764 + MLT1G3 LTR MaLR 10 210 -320 * 414 225 16 101 chr3 94643391 94643520 -123393638 + MER45A DNA AcHobo 61 178 0 321 255 159 40 chr3 94643548 94643757 -123393401 + MLT1G3 LTR MaLR 286 547 -8 216 164 48 164 chr3 94643777 94643834 -123393324 - MIR SINE MIR -64 198 157 2143 116 0 10 chr3 94643834 94644136 -123393022 - AluSq SINE Alu -14 299 1 216 164 48 164 chr3 94644136 94644182 -123392976 - MIR SINE MIR -105 157 107 21 0 0 0 chr3 94645255 94645276 -123391882 + AT_rich Low_complexity Low_complexity 1 21 0 785 77 0 0 chr3 94645468 94645572 -123391586 - L1PA8 LINE L1 -2 6170 6067 186 43 0 0 chr3 94645786 94645809 -123391349 + (TGAA)n Simple_repeat Simple_repeat 2 24 0 327 265 94 68 chr3 94646062 94646179 -123390979 + L2 LINE L2 3153 3272 0 1225 252 167 21 chr3 94646436 94646909 -123390249 - MLT1F LTR MaLR 0 542 1 324 313 90 30 chr3 94647998 94648132 -123389026 + MIR SINE MIR 71 212 -50 19211 39 5 1 chr3 94648833 94651764 -123385394 - L1PA4 LINE L1 -205 5950 3007 2142 123 0 0 chr3 94651765 94652073 -123385085 - AluSx SINE Alu -4 308 1 192 325 19 102 chr3 94652088 94652245 -123384913 + MER5A DNA MER1_type 46 189 0 2306 92 0 13 chr3 94652280 94652594 -123384564 - AluY SINE Alu 0 311 2 197 295 103 26 chr3 94652664 94652742 -123384416 - L2 LINE L2 0 3272 3189 517 198 9 0 chr3 94652787 94652893 -123384265 + L1MB4 LINE L1 6074 6180 0 2591 136 28 9 chr3 94653443 94653878 -123383280 - L1MA8 LINE L1 -104 6187 5745 288 0 0 0 chr3 94653988 94654020 -123383138 + (TAG)n Simple_repeat Simple_repeat 3 34 0 1879 154 0 7 chr3 94654220 94654512 -123382646 + AluSg SINE Alu 1 290 -20 1378 246 75 43 chr3 94656493 94656932 -123380226 - MLT1D LTR MaLR -52 453 1 227 229 177 42 chr3 94656936 94657032 -123380126 - L1MC4 LINE L1 -297 7745 7637 614 250 124 28 chr3 94657054 94657655 -123379503 - L1MC4a LINE L1 -440 7368 6548 2180 248 74 19 chr3 94657798 94658529 -123378629 - L1ME1 LINE L1 -106 6060 5290 1074 205 0 31 chr3 94658546 94658770 -123378388 - AluJo SINE Alu -20 292 76 5016 89 6 18 chr3 94658922 94659650 -123377508 - L1PA8A LINE L1 0 6131 5413 40708 41 2 2 chr3 94659654 94665515 -123371643 - L1PA3 LINE L1 0 6155 291 26 0 0 0 chr3 94665753 94665779 -123371379 + AT_rich Low_complexity Low_complexity 1 26 0 1333 188 71 113 chr3 94666371 94666849 -123370309 + MLT1C LTR MaLR 1 458 -9 420 259 127 34 chr3 94667154 94667359 -123369799 - MIR SINE MIR -26 236 13 237 236 0 0 chr3 94668246 94668301 -123368857 + (TGAA)n Simple_repeat Simple_repeat 4 58 0 226 246 49 0 chr3 94668878 94668939 -123368219 + L2 LINE L2 3199 3262 -51 448 366 78 54 chr3 94668995 94669322 -123367836 + L2 LINE L2 2373 2691 -581 1385 230 95 12 chr3 94669322 94669753 -123367405 + MLT1C LTR MaLR 1 467 0 448 366 78 54 chr3 94669753 94670269 -123366889 + L2 LINE L2 2691 3235 -37 25 31 0 0 chr3 94671668 94671700 -123365458 + AT_rich Low_complexity Low_complexity 1 32 0 2136 98 20 30 chr3 94672011 94672316 -123364842 + AluSq SINE Alu 1 302 -11 332 107 0 0 chr3 94672764 94672820 -123364338 + L1MA7 LINE L1 6230 6285 -6 300 310 75 0 chr3 94673393 94673529 -123363629 - MER5A DNA MER1_type -3 186 29 273 359 34 8 chr3 94673678 94673795 -123363363 + L3b LINE CR1 1216 1335 -248 300 133 0 0 chr3 94674172 94674232 -123362926 + (TG)n Simple_repeat Simple_repeat 1 60 0 186 300 0 20 chr3 94675567 94675617 -123361541 - L2 LINE L2 -8 3264 3216 231 61 0 0 chr3 94675719 94675752 -123361406 + (TC)n Simple_repeat Simple_repeat 2 34 0 410 145 0 48 chr3 94677255 94677379 -123359779 + (TCTA)n Simple_repeat Simple_repeat 4 121 0 21 57 0 0 chr3 94678303 94678338 -123358820 + AT_rich Low_complexity Low_complexity 1 35 0 3075 56 5 2 chr3 94678460 94678856 -123358302 - L1PA7 LINE L1 -4 6150 5754 396 285 0 25 chr3 94678857 94679015 -123358143 - MER20B DNA MER1_type -386 397 244 1360 191 99 7 chr3 94679020 94679293 -123357865 - AluJb SINE Alu -6 306 9 286 350 68 0 chr3 94679321 94679484 -123357674 - MER20B DNA MER1_type -568 215 42 27 92 0 0 chr3 94680083 94680159 -123356999 + AT_rich Low_complexity Low_complexity 1 76 0 21 57 0 0 chr3 94681985 94682020 -123355138 + AT_rich Low_complexity Low_complexity 1 35 0 200 222 0 0 chr3 94682146 94682191 -123354967 + (TA)n Simple_repeat Simple_repeat 1 45 0 2401 85 0 0 chr3 94682431 94682738 -123354420 + AluSx SINE Alu 1 307 -5 21 0 0 0 chr3 94682799 94682820 -123354338 + AT_rich Low_complexity Low_complexity 1 21 0 432 300 65 46 chr3 94682866 94683126 -123354032 - L1 LINE L1 -783 5363 5099 607 242 124 5 chr3 94683312 94683516 -123353642 + MIR SINE MIR 34 261 -1 507 228 32 48 chr3 94733663 94733822 -123303336 - L1MC4 LINE L1 -293 7702 7456 326 261 23 0 chr3 94734018 94734106 -123303052 - L1MC4 LINE L1 -327 7715 7626 860 260 87 22 chr3 94734170 94734572 -123302586 + L1MC4 LINE L1 7000 7450 -383 253 333 0 29 chr3 94734577 94734679 -123302479 - L2 LINE L2 -44 3269 3171 396 211 42 0 chr3 94734859 94734954 -123302204 + L1MC4 LINE L1 7509 7607 -435 252 296 28 0 chr3 94735709 94735780 -123301378 + MER20B DNA MER1_type 13 85 -698 611 298 52 52 chr3 94735853 94736045 -123301113 + MER20B DNA MER1_type 372 566 -217 918 235 18 5 chr3 94736045 94736266 -123300892 + MER58A DNA MER1_type 1 224 0 611 298 52 52 chr3 94736266 94736455 -123300703 + MER20B DNA MER1_type 565 753 -30 300 200 0 0 chr3 94736509 94736569 -123300589 - L1 LINE L1 -943 5203 5144 * 754 231 39 0 chr3 94736568 94736776 -123300382 - L1M4c LINE L1 -2566 3404 3189 * 1858 255 23 69 chr3 94736758 94737328 -123299830 - L1M4c LINE L1 -3110 2860 2332 276 30 0 0 chr3 94737328 94737361 -123299797 + (CA)n Simple_repeat Simple_repeat 2 34 0 1858 255 23 69 chr3 94737361 94737558 -123299600 - L1M4c LINE L1 -3638 2332 2128 * 5358 119 7 20 chr3 94737556 94738379 -123298779 - L1PA13 LINE L1 0 6163 5350 2039 142 73 14 chr3 94738379 94738723 -123298435 - THE1B LTR MaLR 0 364 1 5358 119 7 20 chr3 94738723 94738742 -123298416 - L1PA13 LINE L1 -813 5350 5332 5204 183 12 18 chr3 94738741 94739815 -123297343 + L1PA13 LINE L1 4270 5337 -809 * 603 142 26 42 chr3 94739813 94739891 -123297267 - L1M4c LINE L1 -3831 2139 2061 * 2104 141 0 6 chr3 94739891 94740203 -123296955 - AluSq SINE Alu -3 310 1 603 142 26 42 chr3 94740203 94740323 -123296835 - L1M4c LINE L1 -3909 2061 1951 2007 241 43 58 chr3 94740332 94740971 -123296187 - L1M4c LINE L1 -4519 1382 830 1687 210 34 8 chr3 94740971 94741324 -123295834 + MLT1A1 LTR MaLR 4 365 0 2007 241 43 58 chr3 94741324 94741712 -123295446 - L1M4c LINE L1 -5071 830 437 528 328 65 44 chr3 94742095 94742482 -123294676 - L1M4c LINE L1 -5496 395 1 1191 290 81 69 chr3 94742693 94743472 -123293686 + L2 LINE L2 2343 3132 -181 2006 110 50 0 chr3 94743743 94744024 -123293134 + AluSg SINE Alu 1 295 -15 1583 103 85 9 chr3 94744482 94744808 -123292350 - LTR7 LTR ERV1 -10 440 1 23 33 0 0 chr3 94747275 94747305 -123289853 + AT_rich Low_complexity Low_complexity 1 30 0 241 205 13 39 chr3 94748145 94748223 -123288935 + A-rich Low_complexity Low_complexity 3 78 0 212 40 0 80 chr3 94748230 94748280 -123288878 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 212 300 44 22 chr3 94748423 94748448 -123288710 - L2 LINE L2 -932 2382 2359 204 40 0 0 chr3 94748448 94748473 -123288685 + (TTG)n Simple_repeat Simple_repeat 2 26 0 212 300 44 22 chr3 94748473 94748537 -123288621 - L2 LINE L2 -955 2359 2291 210 37 0 0 chr3 94749275 94749302 -123287856 + (CA)n Simple_repeat Simple_repeat 2 28 0 182 238 0 0 chr3 94749376 94749418 -123287740 + MIR SINE MIR 74 115 -147 627 306 69 39 chr3 94749544 94750177 -123286981 - L2 LINE L2 0 3313 2617 457 260 104 73 chr3 94750267 94750555 -123286603 + L1ME LINE L1 4751 5047 -1099 317 303 0 11 chr3 94750570 94750659 -123286499 + LTR40a LTR ERVL 18 105 -414 2079 141 0 3 chr3 94750662 94750975 -123286183 + AluSx SINE Alu 1 312 0 207 0 64 85 chr3 94751079 94751126 -123286032 + (TTTTA)n Simple_repeat Simple_repeat 3 48 0 1302 274 45 13 chr3 94751141 94751610 -123285548 + LTR40a LTR ERVL 95 517 -2 350 85 17 0 chr3 94751643 94751702 -123285456 + (TAAA)n Simple_repeat Simple_repeat 2 61 0 1218 252 96 27 chr3 94751729 94752377 -123284781 + L1ME LINE L1 5111 5803 -361 210 310 28 0 chr3 94752495 94752566 -123284592 + MIR SINE MIR 92 164 -98 26 101 0 0 chr3 94753163 94753252 -123283906 + AT_rich Low_complexity Low_complexity 1 89 0 22 0 0 0 chr3 94753502 94753524 -123283634 + AT_rich Low_complexity Low_complexity 1 22 0 668 321 92 40 chr3 94754654 94755130 -123282028 - L3 LINE CR1 -349 1228 728 1814 126 0 0 chr3 94755682 94755943 -123281215 - AluSx SINE Alu -11 301 41 222 128 0 0 chr3 94756237 94756276 -123280882 + (TTTTC)n Simple_repeat Simple_repeat 3 41 0 324 279 18 36 chr3 94758116 94758227 -123278931 - L2 LINE L2 -5 3308 3200 287 308 0 44 chr3 94758841 94758932 -123278226 + L2 LINE L2 3227 3313 0 192 40 0 0 chr3 94759926 94759951 -123277207 + (CA)n Simple_repeat Simple_repeat 2 26 0 357 117 0 0 chr3 94760485 94760545 -123276613 + (GA)n Simple_repeat Simple_repeat 1 60 0 1377 203 37 37 chr3 94761136 94761431 -123275727 + AluJo SINE Alu 3 297 -15 237 33 0 0 chr3 94761577 94761607 -123275551 + (TG)n Simple_repeat Simple_repeat 2 31 0 954 161 36 31 chr3 94763297 94763489 -123273669 - MER3 DNA MER1_type -2 207 15 37 39 0 0 chr3 94763517 94763568 -123273590 + AT_rich Low_complexity Low_complexity 1 51 0 200 130 37 0 chr3 94764342 94764396 -123272762 + T-rich Low_complexity Low_complexity 2 57 0 328 172 0 0 chr3 94765975 94766033 -123271125 + LTR40b LTR ERVL 393 450 -12 1688 163 29 0 chr3 94766086 94766363 -123270795 - AluSx SINE Alu -25 287 3 262 279 29 48 chr3 94767309 94767413 -123269745 + MIR3 SINE MIR 55 156 -52 2609 113 3 5 chr3 94767669 94768040 -123269118 + THE1C LTR MaLR 1 370 -5 23 0 0 0 chr3 94768651 94768674 -123268484 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr3 94769518 94769548 -123267610 + AT_rich Low_complexity Low_complexity 1 30 0 1748 165 52 22 chr3 94769715 94770079 -123267079 - THE1C LTR MaLR 0 375 1 192 97 0 0 chr3 94770089 94770120 -123267038 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 24190 32 1 0 chr3 94770122 94773817 -123263341 - L1PA4 LINE L1 -8 6147 2449 2143 153 42 16 chr3 94774076 94774462 -123262696 + MSTD LTR MaLR 1 396 0 214 114 0 45 chr3 94775326 94775370 -123261788 + (GA)n Simple_repeat Simple_repeat 1 42 0 259 358 8 8 chr3 94775678 94775812 -123261346 - L1ME LINE L1 -425 5696 5563 2058 120 0 7 chr3 94777075 94777392 -123259766 + AluSg SINE Alu 1 315 0 24 32 0 0 chr3 94778020 94778051 -123259107 + AT_rich Low_complexity Low_complexity 1 31 0 1424 214 0 36 chr3 94778264 94778695 -123258463 + AluJo SINE Alu 12 431 0 260 100 0 20 chr3 94778728 94778778 -123258380 + (CAGGG)n Simple_repeat Simple_repeat 2 50 0 790 182 0 7 chr3 94779377 94779531 -123257627 - L1MA3 LINE L1 -1 6304 6152 4261 177 31 28 chr3 94779813 94780730 -123256428 + L1MB3 LINE L1 5263 6175 -8 2488 51 0 0 chr3 94781477 94781771 -123255387 - AluY SINE Alu -17 294 1 2139 104 7 0 chr3 94783506 94783804 -123253354 - AluSx SINE Alu -12 300 1 2533 53 0 0 chr3 94784244 94784548 -123252610 - AluY SINE Alu -7 304 1 264 123 0 0 chr3 94786051 94786108 -123251050 + LTR66 LTR ERVL 394 450 -160 1503 179 28 41 chr3 94787267 94787585 -123249573 - MER2 DNA MER2_type -28 317 4 51 70 0 0 chr3 94787943 94788043 -123249115 + AT_rich Low_complexity Low_complexity 1 100 0 391 173 72 0 chr3 94788078 94788217 -123248941 + (TA)n Simple_repeat Simple_repeat 1 149 0 242 190 41 58 chr3 94788245 94788366 -123248792 + (CATATA)n Simple_repeat Simple_repeat 1 119 0 187 111 22 22 chr3 94788375 94788420 -123248738 + (CATA)n Simple_repeat Simple_repeat 1 45 0 25 0 0 0 chr3 94788420 94788445 -123248713 + AT_rich Low_complexity Low_complexity 1 25 0 25 75 0 0 chr3 94788518 94788571 -123248587 + AT_rich Low_complexity Low_complexity 1 53 0 22 0 0 0 chr3 94789315 94789337 -123247821 + AT_rich Low_complexity Low_complexity 1 22 0 361 290 184 39 chr3 94790977 94791399 -123245759 + L2 LINE L2 2527 3047 -266 411 38 0 0 chr3 94791444 94791497 -123245661 + (CA)n Simple_repeat Simple_repeat 2 54 0 316 308 17 47 chr3 94791703 94791875 -123245283 + MIR SINE MIR 95 261 -1 987 262 72 49 chr3 94791952 94792015 -123245143 - LTR16A1 LTR ERVL -1 456 396 2455 67 0 0 chr3 94792015 94792312 -123244846 + AluY SINE Alu 6 302 -9 987 262 72 49 chr3 94792312 94792694 -123244464 - LTR16A1 LTR ERVL -61 396 1 2493 153 24 2 chr3 94793682 94794107 -123243051 + MER57B LTR ERV1 1 434 0 4191 149 21 22 chr3 94794107 94794780 -123242378 + MER57B-int LTR ERV1 1 672 -6865 * 4705 151 36 44 chr3 94794777 94795478 -123241680 + MER57-int LTR ERV1 288 993 -6823 276 53 0 0 chr3 94795478 94795516 -123241642 + (TG)n Simple_repeat Simple_repeat 1 38 0 4705 151 36 44 chr3 94795516 94795770 -123241388 + MER57-int LTR ERV1 993 1247 -6569 183 114 0 0 chr3 94795770 94795805 -123241353 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4705 151 36 44 chr3 94795805 94796493 -123240665 + MER57-int LTR ERV1 1247 4143 -3673 1299 146 8 8 chr3 94796491 94796730 -123240428 + MER57-int LTR ERV1 3914 4152 -3385 * 1156 8 0 0 chr3 94796730 94796862 -123240296 + AluYb8 SINE Alu 186 317 -1 1665 107 19 4 chr3 94796877 94797147 -123240011 + MER57-int LTR ERV1 4141 4414 -3123 10215 101 3 3 chr3 94797148 94798609 -123238549 + L1P LINE L1 11 1471 -4675 234 0 0 0 chr3 94799033 94799059 -123238099 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 775 276 105 20 chr3 94799796 94800276 -123236882 - MLT1E LTR MaLR 0 593 4 298 208 0 78 chr3 94800932 94801009 -123236149 - L3 LINE CR1 -891 686 616 250 164 131 0 chr3 94802195 94802256 -123234902 - L1MA9 LINE L1 -2873 3273 3205 * 7551 192 53 22 chr3 94802247 94802979 -123234179 + L1MA9 LINE L1 3272 3979 -2333 2717 7 0 0 chr3 94802979 94803276 -123233882 - AluYa5 SINE Alu -14 297 1 7551 192 53 22 chr3 94803276 94804972 -123232186 + L1MA9 LINE L1 3979 5774 -538 620 195 0 0 chr3 94804975 94805098 -123232060 + L1MA9 LINE L1 6190 6312 0 747 285 87 60 chr3 94805714 94806210 -123230948 + L1ME3A LINE L1 5463 5981 -181 2292 77 3 3 chr3 94806210 94806507 -123230651 + AluSq SINE Alu 1 297 -16 747 285 87 60 chr3 94806507 94806645 -123230513 + L1ME3A LINE L1 5981 6114 -48 271 297 20 20 chr3 94806857 94806958 -123230200 - L1M4 LINE L1 -2022 4328 4228 235 242 0 0 chr3 94806997 94807063 -123230095 - L1M4 LINE L1 -2362 3988 3923 6639 176 30 32 chr3 94807189 94808427 -123228731 - L1MA7 LINE L1 0 6291 5122 1761 142 3 30 chr3 94808427 94808729 -123228429 - AluSg SINE Alu -16 294 1 6639 176 30 32 chr3 94808729 94809902 -123227256 - L1MA7 LINE L1 -1169 5122 3948 664 234 17 0 chr3 94809954 94810127 -123227031 + L1M4c LINE L1 1496 2070 -4313 3003 257 26 38 chr3 94810140 94811177 -123225981 - L1M4 LINE L1 -4520 1761 823 2347 274 10 75 chr3 94811290 94812098 -123225060 - L1M4 LINE L1 -5518 763 9 502 315 96 68 chr3 94812126 94812735 -123224423 - L1M4 LINE L1 -2479 3667 3029 560 275 8 0 chr3 94812735 94812866 -123224292 - FLAM_A SINE Alu -1 132 1 502 315 96 68 chr3 94812866 94813049 -123224109 - L1M4 LINE L1 -3117 3029 2853 324 384 87 6 chr3 94813294 94813466 -123223692 + L2 LINE L2 3087 3272 0 181 260 40 0 chr3 94813674 94813724 -123223434 + L2 LINE L2 3262 3313 0 3793 166 25 3 chr3 94815082 94815749 -123221409 - HSMAR2 DNA Mariner -1 1301 620 471 116 0 0 chr3 94815750 94815819 -123221339 - HSMAR2 DNA Mariner -645 657 589 2796 50 1 2 chr3 94815819 94816141 -123221017 - L1PA3 LINE L1 -1821 4325 4006 8811 28 5 0 chr3 94816141 94817955 -123219203 + L1PA3 LINE L1 4338 6155 0 2796 50 1 2 chr3 94817955 94817995 -123219163 - L1P LINE L1 -2140 4006 3967 3249 151 31 0 chr3 94818003 94818553 -123218605 - HSMAR2 DNA Mariner -716 586 20 25 0 0 0 chr3 94818597 94818622 -123218536 + AT_rich Low_complexity Low_complexity 1 25 0 222 168 66 0 chr3 94818888 94819025 -123218133 + (TATAA)n Simple_repeat Simple_repeat 1 146 0 362 187 50 66 chr3 94819034 94819216 -123217942 + (CATAA)n Simple_repeat Simple_repeat 2 180 0 21 57 0 0 chr3 94819222 94819257 -123217901 + AT_rich Low_complexity Low_complexity 1 35 0 302 169 52 6 chr3 94819257 94819429 -123217729 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 49 32 0 0 chr3 94819429 94819492 -123217666 + AT_rich Low_complexity Low_complexity 1 63 0 1251 234 195 6 chr3 94819892 94820430 -123216728 - L1 LINE L1 -1417 4729 4089 314 379 23 12 chr3 94820835 94821144 -123216014 - L3 LINE CR1 -115 1462 1079 22 0 0 0 chr3 94821413 94821435 -123215723 + AT_rich Low_complexity Low_complexity 1 22 0 203 299 94 17 chr3 94821475 94821592 -123215566 - L2 LINE L2 0 3313 3188 1776 93 115 4 chr3 94821800 94822079 -123215079 + AluSx SINE Alu 1 310 -2 286 264 37 104 chr3 94823619 94823782 -123213376 - MIR SINE MIR -11 251 100 631 362 92 59 chr3 94824613 94825536 -123211622 - L2 LINE L2 0 3272 2314 1536 163 67 59 chr3 94825536 94825923 -123211235 - MLT1B LTR MaLR 0 390 1 631 362 92 59 chr3 94825923 94825976 -123211182 - L2 LINE L2 -958 2314 2264 4669 35 3 0 chr3 94826216 94826788 -123210370 + L1P LINE L1 1493 2066 -4080 22 88 0 0 chr3 94827340 94827397 -123209761 + AT_rich Low_complexity Low_complexity 1 57 0 195 42 0 0 chr3 94828071 94828095 -123209063 + (TG)n Simple_repeat Simple_repeat 1 24 0 1123 159 62 130 chr3 94828110 94828449 -123208709 + MER7A DNA MER2_type 1 314 -32 1554 206 58 53 chr3 94829463 94829704 -123207454 - MLT1A1 LTR MaLR -4 361 116 635 242 0 0 chr3 94829704 94829836 -123207322 + FLAM_C SINE Alu 1 132 -1 1554 206 58 53 chr3 94829836 94829953 -123207205 - MLT1A1 LTR MaLR -249 116 1 297 225 106 56 chr3 94829956 94830098 -123207060 + MIR SINE MIR 78 226 -36 272 374 8 8 chr3 94831936 94832059 -123205099 + L2 LINE L2 2935 3057 -215 24 32 0 0 chr3 94832865 94832896 -123204262 + AT_rich Low_complexity Low_complexity 1 31 0 438 294 119 45 chr3 94834943 94835321 -123201837 + L1MC/D LINE L1 5322 5727 -2081 29 78 0 0 chr3 94835640 94835704 -123201454 + AT_rich Low_complexity Low_complexity 1 64 0 22 80 0 0 chr3 94836393 94836443 -123200715 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr3 94836458 94836480 -123200678 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 94836587 94836608 -123200550 + AT_rich Low_complexity Low_complexity 1 21 0 5198 92 6 0 chr3 94836714 94837703 -123199455 - L1PB2 LINE L1 0 6151 5227 5249 230 30 5 chr3 94837703 94838907 -123198251 + L1 LINE L1 1903 3144 -3002 207 0 0 0 chr3 94838907 94838930 -123198228 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 5249 230 30 5 chr3 94838930 94839173 -123197985 + L1 LINE L1 3144 3379 -2767 258 271 17 0 chr3 94839728 94839787 -123197371 - MLT1K LTR MaLR -341 247 188 309 242 154 34 chr3 94842144 94842293 -123194865 - HAL1 LINE L1 -1186 1321 1155 931 219 69 13 chr3 94843469 94843702 -123193456 - MLT1D LTR MaLR -258 247 2 28 29 0 0 chr3 94845370 94845405 -123191753 + AT_rich Low_complexity Low_complexity 1 35 0 1740 149 166 3 chr3 94845501 94845869 -123191289 - MSTA LTR MaLR 0 428 1 364 237 34 0 chr3 94845879 94845997 -123191161 + GA-rich Low_complexity Low_complexity 3 124 0 25 65 0 0 chr3 94846002 94846048 -123191110 + GC_rich Low_complexity Low_complexity 1 46 0 368 304 0 43 chr3 94846300 94846484 -123190674 + G-rich Low_complexity Low_complexity 1 176 0 660 119 32 8 chr3 94846751 94846877 -123190281 + GA-rich Low_complexity Low_complexity 3 131 0 1129 186 77 106 chr3 94847106 94847482 -123189676 - MLT1A1 LTR MaLR 0 365 1 246 301 140 7 chr3 94847709 94847845 -123189313 - LTR33A LTR ERVL -261 262 109 1696 168 181 25 chr3 94848925 94849329 -123187829 - MLT1C LTR MaLR 0 467 1 267 284 34 34 chr3 94851453 94851541 -123185617 + L2 LINE L2 3182 3269 -3 255 312 101 0 chr3 94852481 94852590 -123184568 - MIR3 SINE MIR -13 195 76 445 317 24 18 chr3 94852991 94853158 -123184000 - MLT1I LTR MaLR -177 232 65 443 181 35 7 chr3 94853466 94853610 -123183548 + GA-rich Low_complexity Low_complexity 1 148 0 378 264 23 0 chr3 94853630 94853717 -123183441 + MER81 DNA DNA 22 110 -4 1516 258 23 48 chr3 94853784 94854268 -123182890 - LTR40a LTR ERVL -47 472 1 508 226 11 19 chr3 94854932 94855108 -123182050 + MER20 DNA MER1_type 1 218 -1 2446 137 43 2 chr3 94855200 94855617 -123181541 - MER57B LTR ERV1 0 434 1 12475 131 74 62 chr3 94855617 94858466 -123178692 - MER57B-int LTR ERV1 0 7537 4896 41316 45 25 2 chr3 94858470 94864485 -123172673 - L1PA5 LINE L1 -1 6153 1 547 72 0 0 chr3 94864565 94864648 -123172510 - Alu SINE Alu -1 308 226 27273 34 14 2 chr3 94864648 94865083 -123172075 + L1PA2 LINE L1 1931 2359 -3811 240 35 0 0 chr3 94865083 94865112 -123172046 + (CA)n Simple_repeat Simple_repeat 1 29 0 27273 34 14 2 chr3 94865112 94868869 -123168289 + L1PA2 LINE L1 2359 6170 0 949 253 109 0 chr3 94869615 94869836 -123167322 - Tigger7 DNA MER2_type -2241 246 2 232 232 43 0 chr3 94869836 94869905 -123167253 - MIR SINE MIR -57 205 134 1985 187 0 0 chr3 94871491 94871838 -123165320 + MER7A DNA MER2_type 2 346 0 21 36 0 0 chr3 94871851 94871879 -123165279 + AT_rich Low_complexity Low_complexity 1 28 0 26 82 0 0 chr3 94872733 94872794 -123164364 + AT_rich Low_complexity Low_complexity 1 61 0 4196 249 52 24 chr3 94874404 94876664 -123160494 - L1PA15-16 LINE L1 -2882 3915 1612 366 354 14 0 chr3 94877593 94877740 -123159418 - L1PA15-16 LINE L1 -5276 1511 1363 * 801 340 40 53 chr3 94877738 94878355 -123158803 - L1PA15-16 LINE L1 -6177 610 2 740 315 181 6 chr3 94879000 94879359 -123157799 + L2 LINE L2 2881 3302 -11 21 36 0 0 chr3 94879400 94879428 -123157730 + AT_rich Low_complexity Low_complexity 1 28 0 414 285 115 6 chr3 94880795 94880960 -123156198 + MIR SINE MIR 74 256 -6 938 303 59 56 chr3 94881317 94881743 -123155415 + MLT1H LTR MaLR 2 428 -121 1783 171 0 3 chr3 94881913 94882206 -123154952 + AluJb SINE Alu 7 298 -14 24 0 0 0 chr3 94882211 94882235 -123154923 + AT_rich Low_complexity Low_complexity 1 24 0 225 152 43 0 chr3 94883142 94883188 -123153970 + MER4E LTR ERV1 485 532 -234 1264 132 14 29 chr3 94883194 94883433 -123153725 + MER4E LTR ERV1 503 732 -34 187 322 78 62 chr3 94884144 94884402 -123152756 + L2 LINE L2 1933 2194 -1120 1301 53 6 0 chr3 94885437 94885608 -123151550 - L1P LINE L1 -925 5221 5050 209 220 0 20 chr3 94885904 94885954 -123151204 + GA-rich Low_complexity Low_complexity 1 49 0 519 248 52 1 chr3 94886050 94886265 -123150893 + MLT2B1 LTR ERVL 1 224 -190 8765 223 13 11 chr3 94886279 94887316 -123149842 - L1 LINE L1 -1056 5090 4057 4818 112 16 60 chr3 94887316 94888131 -123149027 - MER4E LTR ERV1 0 779 1 8765 223 13 11 chr3 94888131 94889275 -123147883 - L1 LINE L1 -2089 4057 2903 5371 148 4 16 chr3 94889278 94889678 -123147480 + L1PA16 LINE L1 5120 5523 -643 3365 126 8 6 chr3 94889678 94890188 -123146970 - MER9 LTR ERVK 0 511 1 5371 148 4 16 chr3 94890188 94890509 -123146649 + L1PA16 LINE L1 5523 5827 -339 1709 194 123 0 chr3 94890509 94890890 -123146268 + MSTA LTR MaLR 1 428 0 5371 148 4 16 chr3 94890890 94891207 -123145951 + L1PA16 LINE L1 5827 6146 -20 342 343 41 21 chr3 94891264 94891506 -123145652 - L2 LINE L2 -1073 2241 1995 1820 167 0 0 chr3 94891690 94891977 -123145181 - AluSx SINE Alu -16 296 10 225 119 0 0 chr3 94892745 94892787 -123144371 + (T)n Simple_repeat Simple_repeat 1 42 0 630 241 46 35 chr3 94892789 94892963 -123144195 + MLT2B1 LTR ERVL 289 464 -56 228 182 0 0 chr3 94892987 94893031 -123144127 + (CA)n Simple_repeat Simple_repeat 2 45 0 280 128 21 0 chr3 94893031 94893078 -123144080 + MLT2B1 LTR ERVL 417 464 0 286 290 68 4 chr3 94993488 94993582 -123043576 - MIR SINE MIR -63 145 61 1609 158 39 85 chr3 94993771 94993929 -123043229 + MSTB LTR MaLR 3 167 -259 1199 90 0 0 chr3 94993929 94994096 -123043062 + L1MA1 LINE L1 6131 6297 -5 1609 158 39 85 chr3 94994096 94994349 -123042809 + MSTB LTR MaLR 167 395 -31 21 57 0 0 chr3 94995475 94995510 -123041648 + AT_rich Low_complexity Low_complexity 1 35 0 213 291 18 0 chr3 94996186 94996241 -123040917 + L2 LINE L2 3228 3283 -30 397 291 114 6 chr3 94996266 94996441 -123040717 - LTR16C LTR ERVL -32 459 266 656 189 33 0 chr3 94996856 94996978 -123040180 + FLAM_C SINE Alu 5 130 -3 2071 151 38 26 chr3 94997101 94997524 -123039634 - MSTA LTR MaLR 0 428 1 249 226 20 147 chr3 94997988 94998090 -123039068 + MLT1E1 LTR MaLR 7 95 -559 * 1451 230 24 96 chr3 94998074 94998539 -123038619 + MLT1E1 LTR MaLR 221 465 -2 252 215 13 38 chr3 94998676 94998755 -123038403 - L1MB4 LINE L1 -32 6148 6072 * 3630 189 50 12 chr3 94998745 95000109 -123037049 - L1MA4 LINE L1 -283 6017 4602 238 361 35 28 chr3 95000621 95000765 -123036393 + L3 LINE CR1 949 1093 -484 35 0 0 0 chr3 95001581 95001616 -123035542 + AT_rich Low_complexity Low_complexity 1 35 0 1653 155 30 30 chr3 95002599 95002903 -123034255 - AluSx SINE Alu -8 304 1 294 327 47 97 chr3 95004139 95004546 -123032612 + L2 LINE L2 2626 3012 -260 783 297 60 34 chr3 95004549 95004929 -123032229 + MLT1B LTR MaLR 1 390 0 267 93 0 0 chr3 95005690 95005733 -123031425 + (CA)n Simple_repeat Simple_repeat 1 43 0 261 0 0 0 chr3 95006574 95006603 -123030555 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1150 219 39 29 chr3 95006611 95006890 -123030268 - AluJo SINE Alu -30 282 1 722 240 0 0 chr3 95006950 95007125 -123030033 + L1P LINE L1 4276 4450 -1696 1038 199 17 50 chr3 95007137 95007378 -123029780 + MSTD LTR MaLR 164 396 0 1114 277 93 29 chr3 95007569 95007826 -123029332 + L1MC4 LINE L1 6443 6682 -1360 276 30 0 0 chr3 95007826 95007859 -123029299 + (CA)n Simple_repeat Simple_repeat 2 34 0 1114 277 93 29 chr3 95007859 95008682 -123028476 + L1MC4 LINE L1 6682 7746 -296 1145 323 78 20 chr3 95008695 95009246 -123027912 + MLT1E LTR MaLR 11 593 0 463 221 73 22 chr3 95009353 95009489 -123027669 + L1MC4 LINE L1 7757 7899 -143 27 49 0 0 chr3 95010310 95010351 -123026807 + AT_rich Low_complexity Low_complexity 1 41 0 214 229 49 33 chr3 95012572 95012633 -123024525 - MIR SINE MIR 0 262 201 2049 203 21 14 chr3 95012873 95013296 -123023862 + MSTB LTR MaLR 1 426 0 21 0 0 0 chr3 95013649 95013670 -123023488 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr3 95014260 95014289 -123022869 + AT_rich Low_complexity Low_complexity 1 29 0 591 296 6 28 chr3 95014880 95015056 -123022102 - L2 LINE L2 -5 3308 3137 444 361 88 25 chr3 95015322 95015596 -123021562 - L2 LINE L2 -337 2977 2687 277 310 17 9 chr3 95015596 95015712 -123021446 + L1MA10 LINE L1 6216 6332 -2 782 317 172 10 chr3 95015715 95016122 -123021036 - L2 LINE L2 -623 2691 2219 532 70 23 0 chr3 95016122 95016208 -123020950 + (TCTA)n Simple_repeat Simple_repeat 4 91 0 346 360 42 21 chr3 95016233 95016422 -123020736 - L2 LINE L2 -1095 2219 2027 1394 92 0 11 chr3 95016485 95016721 -123020437 + AluSq SINE Alu 103 336 0 1929 313 80 7 chr3 95016771 95017510 -123019648 - L2 LINE L2 -1457 1857 1065 21 0 0 0 chr3 95017665 95017686 -123019472 + AT_rich Low_complexity Low_complexity 1 21 0 42 89 0 0 chr3 95018084 95018196 -123018962 + AT_rich Low_complexity Low_complexity 1 112 0 329 302 143 0 chr3 95018303 95018429 -123018729 - MIR SINE MIR -37 225 82 24 0 0 0 chr3 95018663 95018687 -123018471 + AT_rich Low_complexity Low_complexity 1 24 0 357 342 9 0 chr3 95019444 95019555 -123017603 + L2 LINE L2 2568 2679 -635 446 340 63 78 chr3 95019636 95020095 -123017063 + L2 LINE L2 2853 3304 -9 280 297 198 28 chr3 95021475 95021657 -123015501 - L2 LINE L2 -20 3293 3081 906 58 0 8 chr3 95021663 95021783 -123015375 - AluY SINE Alu -4 307 189 520 329 21 48 chr3 95021783 95022139 -123015019 - L2 LINE L2 -229 3084 2737 21 57 0 0 chr3 95023525 95023560 -123013598 + AT_rich Low_complexity Low_complexity 1 35 0 469 356 86 10 chr3 95023984 95024287 -123012871 + L2 LINE L2 2196 2521 -793 316 205 115 0 chr3 95024298 95024376 -123012782 - Tigger5 DNA MER2_type 0 2323 2237 331 357 7 45 chr3 95024462 95024616 -123012542 + L2 LINE L2 2556 2703 -611 405 208 59 0 chr3 95024621 95024632 -123012526 - L1MA10 LINE L1 -40 6294 6284 517 291 54 34 chr3 95024632 95024927 -123012231 - L1ME1 LINE L1 -44 6122 5822 1397 208 208 35 chr3 95025076 95025504 -123011654 - MLT1D LTR MaLR -3 502 1 249 394 19 0 chr3 95025504 95025599 -123011559 + LTR67 LTR ERVL 76 172 -385 201 182 0 0 chr3 95025874 95025907 -123011251 + T-rich Low_complexity Low_complexity 1 33 0 299 317 13 0 chr3 95026343 95026450 -123010708 + HERVL LTR ERVL 514 601 -5053 189 0 0 0 chr3 95026889 95026910 -123010248 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1769 176 166 0 chr3 95026990 95027400 -123009758 + LTR54B LTR ERV1 1 478 -20 29 0 0 0 chr3 95028012 95028041 -123009117 + AT_rich Low_complexity Low_complexity 1 29 0 231 358 37 0 chr3 95029331 95029412 -123007746 - MER5B DNA MER1_type -69 109 26 34 65 0 0 chr3 95031816 95031878 -123005280 + AT_rich Low_complexity Low_complexity 1 62 0 285 165 39 39 chr3 95033539 95033642 -123003516 + (TCTA)n Simple_repeat Simple_repeat 4 106 0 186 167 0 0 chr3 95033737 95033773 -123003385 + GA-rich Low_complexity Low_complexity 3 38 0 613 237 75 48 chr3 95034039 95034271 -123002887 + LTR40b LTR ERVL 271 461 -1 1901 161 0 3 chr3 95036482 95036786 -123000372 - AluSx SINE Alu -9 303 1 280 196 0 0 chr3 95038070 95038116 -122999042 + L2 LINE L2 3265 3310 -3 25 0 0 0 chr3 95038305 95038330 -122998828 + AT_rich Low_complexity Low_complexity 1 25 0 195 227 0 67 chr3 95038489 95038564 -122998594 - MIR SINE MIR -64 198 129 270 0 0 0 chr3 95039290 95039320 -122997838 + (TG)n Simple_repeat Simple_repeat 2 31 0 2023 247 59 109 chr3 95040417 95041557 -122995601 + MER52A LTR ERV1 673 1755 0 2040 143 3 0 chr3 95041771 95042065 -122995093 + AluSq SINE Alu 1 295 -18 220 371 0 0 chr3 95042244 95042314 -122994844 - L2 LINE L2 -79 3193 3124 556 317 150 55 chr3 95042402 95042967 -122994191 + L3 LINE CR1 922 1540 -37 219 88 0 0 chr3 95042981 95043015 -122994143 + (CA)n Simple_repeat Simple_repeat 1 34 0 1705 52 0 0 chr3 95043593 95043805 -122993353 - L1PA5 LINE L1 -5 6149 5938 598 63 13 0 chr3 95044279 95044358 -122992800 - MADE1 DNA Mariner 0 80 1 323 326 83 76 chr3 95044588 95044632 -122992526 - MLT1I LTR MaLR -39 370 328 2006 130 13 7 chr3 95044632 95044931 -122992227 + AluSc SINE Alu 1 301 -8 323 326 83 76 chr3 95044931 95045187 -122991971 - MLT1I LTR MaLR -81 328 68 472 332 42 45 chr3 95046554 95046864 -122990294 + MLT1H LTR MaLR 1 309 -240 1755 168 3 11 chr3 95047404 95047691 -122989467 + AluJo SINE Alu 1 309 0 217 0 0 0 chr3 95047691 95047715 -122989443 + (CAAAA)n Simple_repeat Simple_repeat 2 70 0 941 365 30 41 chr3 95048203 95048740 -122988418 + MER115 DNA AcHobo 5 535 -158 407 148 11 45 chr3 95048723 95048811 -122988347 + LTR30 LTR ERV1 540 624 -98 * 444 243 59 22 chr3 95048833 95048969 -122988189 + MER115 DNA AcHobo 524 664 -29 292 272 49 0 chr3 95048969 95049050 -122988108 - MIR SINE MIR -121 141 57 378 61 0 0 chr3 95049327 95049335 -122987823 + (TG)n Simple_repeat Simple_repeat 1 57 0 378 61 0 0 chr3 95049335 95049384 -122987774 + (TG)n Simple_repeat Simple_repeat 2 50 0 1619 69 0 0 chr3 95049415 95049619 -122987539 - AluY SINE Alu -14 297 94 226 315 0 0 chr3 95049710 95049764 -122987394 + L2 LINE L2 3242 3295 -18 29 0 0 0 chr3 95049836 95049865 -122987293 + AT_rich Low_complexity Low_complexity 1 29 0 2315 96 0 0 chr3 95049867 95050168 -122986990 + AluSg SINE Alu 1 301 -9 21 0 0 0 chr3 95050604 95050625 -122986533 + AT_rich Low_complexity Low_complexity 1 21 0 35 24 0 0 chr3 95050980 95051022 -122986136 + AT_rich Low_complexity Low_complexity 1 42 0 219 275 29 14 chr3 95051848 95051917 -122985241 + MER5B DNA MER1_type 1 70 -108 1824 132 38 0 chr3 95051921 95052210 -122984948 + AluJb SINE Alu 7 306 -6 403 308 69 15 chr3 95052796 95052926 -122984232 - MIR SINE MIR -117 145 9 2256 81 7 7 chr3 95053146 95053454 -122983704 - AluY SINE Alu -3 308 1 24 53 0 0 chr3 95053989 95054027 -122983131 + AT_rich Low_complexity Low_complexity 1 38 0 198 0 0 0 chr3 95054433 95054455 -122982703 + (A)n Simple_repeat Simple_repeat 1 22 0 21 89 0 0 chr3 95054611 95054667 -122982491 + AT_rich Low_complexity Low_complexity 1 56 0 1671 188 24 18 chr3 95055247 95055588 -122981570 - MER61A LTR ERV1 0 343 1 6119 80 15 34 chr3 95057778 95059647 -122977511 + SVA Other Other 1 1385 -1 192 77 0 0 chr3 95060218 95060244 -122976914 + (A)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr3 95060798 95060820 -122976338 + AT_rich Low_complexity Low_complexity 1 22 0 434 327 21 68 chr3 95061271 95061462 -122975696 - MLT1J1 LTR MaLR -126 320 150 379 288 9 0 chr3 95061462 95061573 -122975585 - MER81 DNA DNA -2 112 1 434 327 21 68 chr3 95061573 95061717 -122975441 - MLT1J1 LTR MaLR -296 150 1 244 391 94 0 chr3 95062136 95062264 -122974894 + MIR3 SINE MIR 2 141 -67 1130 147 168 5 chr3 95062280 95062577 -122974581 + Tigger3(Golem) DNA MER2_type 2 3029 0 22 35 0 0 chr3 95063009 95063038 -122974120 + AT_rich Low_complexity Low_complexity 1 29 0 1434 188 23 106 chr3 95064023 95064421 -122972737 - MLT1A1 LTR MaLR 0 365 1 211 304 0 0 chr3 95064472 95064518 -122972640 - MIR SINE MIR -164 98 53 23 0 0 0 chr3 95064593 95064616 -122972542 + AT_rich Low_complexity Low_complexity 1 23 0 1046 159 0 6 chr3 95065808 95065978 -122971180 + MER49 LTR ERV1 248 416 -507 713 238 30 12 chr3 95066357 95066521 -122970637 + MIR SINE MIR 17 183 -79 2820 123 46 24 chr3 95066521 95067001 -122970157 + MER49 LTR ERV1 1 494 -429 3037 134 36 2 chr3 95067001 95067477 -122969681 + LOR1a LTR ERV1 4 495 -2 2820 123 46 24 chr3 95067477 95067492 -122969666 + MER49 LTR ERV1 494 507 -416 384 77 0 0 chr3 95067532 95067584 -122969574 + MADE1 DNA Mariner 27 78 -2 1860 122 71 42 chr3 95067788 95068141 -122969017 - THE1B LTR MaLR -1 363 1 10269 115 35 1 chr3 95068141 95069666 -122967492 - THE1B-int LTR MaLR 0 1580 5 1740 148 7 43 chr3 95069668 95069973 -122967185 - THE1B LTR MaLR 0 364 71 21 0 0 0 chr3 95069986 95070007 -122967151 + AT_rich Low_complexity Low_complexity 1 21 0 325 296 112 8 chr3 95070121 95070246 -122966912 - MLT1J2 LTR MaLR -312 138 1 2004 119 0 10 chr3 95070405 95070723 -122966435 + AluSx SINE Alu 1 315 0 534 277 59 87 chr3 95070764 95071168 -122965990 + MER93a LTR ERV1 10 402 0 496 312 47 23 chr3 95071295 95071510 -122965648 - MER58A DNA MER1_type -3 221 2 38 68 0 0 chr3 95072567 95072640 -122964518 + AT_rich Low_complexity Low_complexity 1 73 0 227 245 196 29 chr3 95072728 95072830 -122964328 - L2 LINE L2 -3 3269 3151 211 344 17 20 chr3 95072887 95073039 -122964119 + MIR SINE MIR 46 194 -14 4403 184 26 12 chr3 95073108 95074386 -122962772 + L1PA16 LINE L1 4773 6060 -106 451 66 0 0 chr3 95074387 95074448 -122962710 + L1PA16 LINE L1 6097 6157 -9 21 0 0 0 chr3 95074572 95074593 -122962565 + AT_rich Low_complexity Low_complexity 1 21 0 21 95 0 0 chr3 95074653 95074716 -122962442 + AT_rich Low_complexity Low_complexity 1 63 0 25 31 0 0 chr3 95074752 95074784 -122962374 + AT_rich Low_complexity Low_complexity 1 32 0 795 290 88 49 chr3 95074968 95075579 -122961579 + HsTC2a DNA Tc2 107 741 -3 582 312 130 20 chr3 95076034 95076335 -122960823 - L2 LINE L2 -5 3308 2975 464 334 34 68 chr3 95076350 95076673 -122960485 - L2 LINE L2 -466 2848 2537 433 313 215 13 chr3 95076699 95077036 -122960122 - L2 LINE L2 -252 3061 2665 19749 188 28 19 chr3 95077577 95081894 -122955264 + L1M1 LINE L1 17 4407 -3158 3113 38 0 0 chr3 95081894 95082267 -122954891 + L1PA4 LINE L1 5782 6154 -1 19749 188 28 19 chr3 95082267 95084128 -122953030 + L1M1 LINE L1 4407 6250 -1315 363 223 0 33 chr3 95084122 95084243 -122952915 + L1 LINE L1 4671 4787 -2778 * 867 127 0 67 chr3 95084271 95084436 -122952722 + L1MA1 LINE L1 5903 6056 -246 979 123 25 0 chr3 95084439 95084602 -122952556 + L1MA1 LINE L1 6132 6298 -4 461 234 117 45 chr3 95084797 95085019 -122952139 - L1MCa LINE L1 -5027 1399 1162 9576 121 7 1 chr3 95085025 95087304 -122949854 - L1PA8 LINE L1 -2 6170 3880 266 269 0 9 chr3 95087978 95088086 -122949072 + CT-rich Low_complexity Low_complexity 4 110 0 205 314 14 14 chr3 95088573 95088643 -122948515 + L2 LINE L2 3196 3265 -48 350 350 94 20 chr3 95090097 95090300 -122946858 + MIR SINE MIR 34 251 -11 23 0 0 0 chr3 95091036 95091059 -122946099 + AT_rich Low_complexity Low_complexity 1 23 0 396 269 163 35 chr3 95091138 95091421 -122945737 - L1MC4 LINE L1 -1 8041 7723 203 200 27 40 chr3 95092076 95092151 -122945007 + (CATATA)n Simple_repeat Simple_repeat 5 78 0 21 36 0 0 chr3 95092588 95092616 -122944542 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 95093870 95093892 -122943266 + AT_rich Low_complexity Low_complexity 1 22 0 204 88 59 0 chr3 95094157 95094191 -122942967 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 5568 149 23 32 chr3 95094383 95095464 -122941694 - MER11C LTR ERVK 0 1071 1 30 27 0 0 chr3 95096510 95096547 -122940611 + AT_rich Low_complexity Low_complexity 1 37 0 368 89 0 0 chr3 95096761 95096817 -122940341 - L1PA7 LINE L1 -13 6141 6086 6453 83 9 3 chr3 95096818 95098010 -122939148 - L1PA7 LINE L1 -34 6120 4924 2204 156 0 26 chr3 95098078 95098425 -122938733 + MER1B DNA MER1_type 1 338 -1 331 238 163 33 chr3 95098474 95098714 -122938444 - L1MC5 LINE L1 -370 7591 7321 327 209 0 33 chr3 95098836 95098927 -122938231 - L1PA16 LINE L1 0 6166 6079 1547 139 28 3 chr3 95098945 95099233 -122937925 + L1P5 LINE L1 5312 5606 -550 325 276 133 20 chr3 95099323 95099519 -122937639 - L1MC5 LINE L1 -742 7219 7002 754 307 51 7 chr3 95099544 95099840 -122937318 - L1MC4 LINE L1 -1033 7009 6701 699 327 28 28 chr3 95100272 95100593 -122936565 + ERVL LTR ERVL 4381 4701 -1063 204 418 52 0 chr3 95100993 95101127 -122936031 + MIR SINE MIR 32 172 -90 28 0 0 0 chr3 95102354 95102382 -122934776 + AT_rich Low_complexity Low_complexity 1 28 0 282 299 54 72 chr3 95102388 95102555 -122934603 - MIR SINE MIR -85 177 14 402 225 16 116 chr3 95102753 95102790 -122934368 - L2 LINE L2 -248 3065 3026 503 214 37 43 chr3 95102790 95102977 -122934181 + MER53 DNA DNA 4 189 0 402 225 16 116 chr3 95102977 95103068 -122934090 - L2 LINE L2 -287 3026 2950 799 344 121 35 chr3 95103094 95103329 -122933829 - L2 LINE L2 -421 2893 2680 2436 50 30 10 chr3 95103329 95103628 -122933530 + AluY SINE Alu 1 305 -6 799 344 121 35 chr3 95103628 95104316 -122932842 - L2 LINE L2 -634 2680 1890 22 0 0 0 chr3 95105870 95105892 -122931266 + AT_rich Low_complexity Low_complexity 1 22 0 292 303 108 27 chr3 95105974 95106159 -122930999 - MIR SINE MIR -46 216 17 25 0 0 0 chr3 95106291 95106316 -122930842 + AT_rich Low_complexity Low_complexity 1 25 0 916 280 180 23 chr3 95106478 95107088 -122930070 - HAL1 LINE L1 -309 2198 1493 3208 211 39 20 chr3 95108660 95109613 -122927545 - L1MB1 LINE L1 -34 6134 5165 1517 245 28 0 chr3 95109612 95110008 -122927150 + L1MB1 LINE L1 4787 5193 -953 * 210 71 0 0 chr3 95110202 95110230 -122926928 + (TATG)n Simple_repeat Simple_repeat 3 30 0 1424 175 179 0 chr3 95110235 95110526 -122926632 - MER7A DNA MER2_type -5 341 1 1581 143 115 4 chr3 95111019 95111298 -122925860 + AluJb SINE Alu 1 310 -2 586 335 69 0 chr3 95111668 95111886 -122925272 + MIR SINE MIR 30 262 0 333 256 77 0 chr3 95112153 95112231 -122924927 + MER94 DNA DNA 3 86 -48 22 56 0 0 chr3 95112288 95112324 -122924834 + AT_rich Low_complexity Low_complexity 1 36 0 3022 214 184 41 chr3 95114299 95115269 -122921889 + MER52C LTR ERV1 1 1278 0 4785 117 16 19 chr3 95115275 95116222 -122920936 + MER52C-int LTR ERV1 6 1033 -6058 11170 133 26 5 chr3 95116223 95117917 -122919241 + MER52-int LTR ERV1 833 2561 -4530 * 25429 114 50 28 chr3 95117893 95118812 -122918346 + MER52-int LTR ERV1 2727 3624 -3467 185 243 54 68 chr3 95118812 95118886 -122918272 + MER5B DNA MER1_type 1 73 -105 25429 114 50 28 chr3 95118886 95119380 -122917778 + MER52-int LTR ERV1 3624 4106 -2985 1879 136 84 32 chr3 95119380 95119726 -122917432 + THE1B LTR MaLR 1 364 0 10845 118 8 1 chr3 95119726 95121295 -122915863 + THE1B-int LTR MaLR 1 1580 0 2021 126 85 18 chr3 95121295 95121636 -122915522 + THE1B LTR MaLR 1 364 0 25429 114 50 28 chr3 95121636 95124071 -122913087 + MER52-int LTR ERV1 4105 6738 -353 1619 92 62 4 chr3 95124075 95124302 -122912856 + MER52C-int LTR ERV1 6850 7089 -2 3830 192 217 21 chr3 95124305 95125303 -122911855 + MER52C LTR ERV1 1 1271 -7 1374 242 25 22 chr3 95125619 95125978 -122911180 - MLT1A1 LTR MaLR 0 365 6 1129 184 108 93 chr3 95126305 95126637 -122910521 + MLT1A1 LTR MaLR 1 337 -28 270 189 0 19 chr3 95126761 95126814 -122910344 + MLT1A1 LTR MaLR 321 372 -2 373 386 13 6 chr3 95127822 95127980 -122909178 - L3 LINE CR1 -1396 181 23 25 31 0 0 chr3 95129345 95129377 -122907781 + AT_rich Low_complexity Low_complexity 1 32 0 211 333 26 0 chr3 95129500 95129578 -122907580 + MIR SINE MIR 75 154 -108 7011 148 25 41 chr3 95133011 95133071 -122904087 - HSMAR2 DNA Mariner -2 1300 1241 13962 112 18 9 chr3 95133071 95136032 -122901126 - L1PA8 LINE L1 -4 6168 3185 7011 148 25 41 chr3 95136032 95137290 -122899868 - HSMAR2 DNA Mariner -61 1241 3 202 283 0 0 chr3 95137290 95137350 -122899808 + (TATATG)n Simple_repeat Simple_repeat 4 63 0 4019 248 41 47 chr3 95137477 95137935 -122899223 - L1MC3 LINE L1 -9 7776 7317 2156 125 3 0 chr3 95137935 95138230 -122898928 - AluSq SINE Alu -17 296 1 4019 248 41 47 chr3 95138230 95138435 -122898723 - L1MC3 LINE L1 -468 7317 7112 12640 170 26 17 chr3 95138435 95139303 -122897855 - Tigger1 DNA MER2_type -1 2417 1558 2032 124 6 48 chr3 95139303 95139618 -122897540 - AluSx SINE Alu -10 302 1 12640 170 26 17 chr3 95139618 95141141 -122896017 - Tigger1 DNA MER2_type -860 1558 4 4019 248 41 47 chr3 95141141 95142004 -122895154 - L1MC3 LINE L1 -673 7112 6257 777 278 125 12 chr3 95141977 95142297 -122894861 - L1MCb LINE L1 -5556 489 134 * 1438 217 73 45 chr3 95142299 95142723 -122894435 + LTR47B LTR ERVL 1 436 -7 251 238 128 55 chr3 95142732 95142896 -122894262 - L1MCb LINE L1 -6244 320 145 357 238 21 62 chr3 95144856 95144915 -122892243 - MER53 DNA DNA -1 188 128 2160 105 3 0 chr3 95144915 95145209 -122891949 - AluSx SINE Alu -17 295 1 357 238 21 62 chr3 95145209 95145342 -122891816 - MER53 DNA DNA -61 128 4 332 233 87 68 chr3 95145666 95145769 -122891389 - MER5A DNA MER1_type -78 111 7 562 254 141 75 chr3 95145964 95146372 -122890786 + L2 LINE L2 2700 3147 -166 2263 99 0 10 chr3 95146372 95146685 -122890473 - AluSg SINE Alu 0 310 1 562 254 141 75 chr3 95146685 95146837 -122890321 + L2 LINE L2 3147 3288 -25 205 254 36 0 chr3 95146799 95146854 -122890304 + MIR SINE MIR 206 262 0 * 14587 133 14 4 chr3 95147105 95150844 -122886314 - L1PA8A LINE L1 -672 5459 1685 208 222 0 0 chr3 95151417 95151462 -122885696 - L2 LINE L2 -4 3309 3265 32 0 0 0 chr3 95151491 95151523 -122885635 + AT_rich Low_complexity Low_complexity 1 32 0 23 54 0 0 chr3 95151631 95151668 -122885490 + AT_rich Low_complexity Low_complexity 1 37 0 23 97 0 0 chr3 95152125 95152197 -122884961 + AT_rich Low_complexity Low_complexity 1 72 0 27 0 0 0 chr3 95152986 95153013 -122884145 + AT_rich Low_complexity Low_complexity 1 27 0 713 292 105 29 chr3 95153040 95153451 -122883707 + MLT1D LTR MaLR 64 505 0 26 30 0 0 chr3 95153477 95153510 -122883648 + AT_rich Low_complexity Low_complexity 1 33 0 490 239 82 0 chr3 95153945 95154079 -122883079 + MIR SINE MIR 78 222 -40 252 122 0 0 chr3 95154674 95154715 -122882443 + (TG)n Simple_repeat Simple_repeat 1 41 0 369 0 0 0 chr3 95155300 95155341 -122881817 + (CA)n Simple_repeat Simple_repeat 2 42 0 520 203 68 23 chr3 95156835 95157012 -122880146 + MER53 DNA DNA 2 186 -3 262 360 13 39 chr3 95157052 95157205 -122879953 + LTR16C LTR ERVL 287 435 -56 23 0 0 0 chr3 95157504 95157527 -122879631 + AT_rich Low_complexity Low_complexity 1 23 0 2329 120 5 40 chr3 95157581 95157650 -122879508 - THE1B LTR MaLR 0 364 294 2516 45 7 0 chr3 95157650 95157958 -122879200 - AluY SINE Alu -1 310 1 2329 120 5 40 chr3 95157958 95158264 -122878894 - THE1B LTR MaLR -70 294 2 447 363 35 4 chr3 95158275 95158501 -122878657 - L1M4 LINE L1 -1166 4980 4748 940 123 139 1 chr3 95158553 95158593 -122878565 - MLT2A2 LTR ERVL 0 453 420 332 88 18 0 chr3 95158593 95158650 -122878508 + (TA)n Simple_repeat Simple_repeat 2 59 0 940 123 139 1 chr3 95158650 95158783 -122878375 - MLT2A2 LTR ERVL -33 420 293 756 256 73 49 chr3 95159659 95160003 -122877155 - L1ME1 LINE L1 -4 6162 5811 * 4321 190 59 16 chr3 95159999 95160971 -122876187 - L1MC1 LINE L1 0 6333 5321 32 43 0 0 chr3 95160992 95161038 -122876120 + AT_rich Low_complexity Low_complexity 1 46 0 845 146 30 0 chr3 95161038 95161203 -122875955 - L1MA8 LINE L1 -5 6286 6117 3083 184 103 6 chr3 95161205 95161895 -122875263 - L1MA7 LINE L1 -270 6021 5265 494 221 35 2 chr3 95161909 95162067 -122875091 + L1 LINE L1 4277 4436 -1710 1499 188 47 0 chr3 95162071 95162391 -122874767 - L1MA7 LINE L1 -894 5252 4918 261 164 3 0 chr3 95162525 95162587 -122874571 - L1MC1 LINE L1 -1022 5322 5260 232 211 18 0 chr3 95162614 95162671 -122874487 + (TA)n Simple_repeat Simple_repeat 1 58 0 6174 235 18 8 chr3 95163816 95165403 -122871755 - L1 LINE L1 -1097 5049 3448 5083 153 17 18 chr3 95165521 95166471 -122870687 + L1PA16 LINE L1 5215 6163 -3 200 111 0 28 chr3 95166474 95166510 -122870648 + (GGAAA)n Simple_repeat Simple_repeat 1 35 0 22 56 0 0 chr3 95166985 95167021 -122870137 + AT_rich Low_complexity Low_complexity 1 36 0 359 321 113 18 chr3 95169608 95169776 -122867382 - MIR SINE MIR -65 197 14 249 200 0 0 chr3 95169977 95170022 -122867136 - MIR SINE MIR -154 108 64 2173 118 0 0 chr3 95170535 95170832 -122866326 - AluSq SINE Alu -16 297 1 21 0 0 0 chr3 95171174 95171195 -122865963 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr3 95171305 95171338 -122865820 + AT_rich Low_complexity Low_complexity 1 33 0 391 280 35 14 chr3 95171524 95171667 -122865491 + MER69 DNA AcHobo 1 146 -2380 21 36 0 0 chr3 95171979 95172007 -122865151 + AT_rich Low_complexity Low_complexity 1 28 0 2419 281 69 66 chr3 95172096 95172348 -122864810 + L1MB7 LINE L1 20 270 -6589 2228 59 19 36 chr3 95172348 95172472 -122864686 + AluY SINE Alu 1 126 -185 189 0 0 0 chr3 95172472 95172493 -122864665 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 2228 59 19 36 chr3 95172493 95172675 -122864483 + AluY SINE Alu 126 302 -9 2419 281 69 66 chr3 95172675 95173468 -122863690 + L1MB7 LINE L1 270 1068 -5791 1289 270 50 25 chr3 95173477 95174040 -122863118 + L1MB7 LINE L1 1343 1919 -4936 2473 207 39 66 chr3 95174054 95174812 -122862346 + L1MB7 LINE L1 5335 6084 -905 2238 95 0 7 chr3 95174812 95175107 -122862051 + AluY SINE Alu 1 293 -18 2473 207 39 66 chr3 95175107 95175604 -122861554 + L1MB7 LINE L1 6084 6592 -397 876 258 59 50 chr3 95175605 95175927 -122861231 - MLT1B LTR MaLR 0 390 66 1069 192 43 50 chr3 95176171 95176452 -122860706 + L1MB7 LINE L1 6583 6861 -134 1087 273 38 18 chr3 95176601 95176993 -122860165 - L1ME1 LINE L1 -167 5999 5600 322 265 12 0 chr3 95177011 95177094 -122860064 - MIR SINE MIR -9 253 170 27 29 0 0 chr3 95177125 95177159 -122859999 + AT_rich Low_complexity Low_complexity 1 34 0 2498 166 88 31 chr3 95177830 95178326 -122858832 - L1MA8 LINE L1 -7 6284 5753 2023 89 3 45 chr3 95178326 95178639 -122858519 - AluY SINE Alu -11 300 1 2498 166 88 31 chr3 95178639 95178690 -122858468 - L1MA8 LINE L1 -538 5753 5706 7324 183 23 25 chr3 95178791 95179574 -122857584 - L1P3 LINE L1 -4410 2051 1268 213 94 0 0 chr3 95179574 95179606 -122857552 + (TTG)n Simple_repeat Simple_repeat 2 33 0 7324 183 23 25 chr3 95179606 95180806 -122856352 - L1P3 LINE L1 -5193 1268 15 1208 145 51 8 chr3 95180805 95181039 -122856119 - L1MA8 LINE L1 -743 5403 5160 * 276 326 91 39 chr3 95181057 95181287 -122855871 + L2 LINE L2 2157 2398 -916 267 114 0 0 chr3 95181288 95181332 -122855826 + (ATG)n Simple_repeat Simple_repeat 2 45 0 278 348 80 36 chr3 95181488 95181738 -122855420 + L2 LINE L2 2596 2856 -458 303 402 57 14 chr3 95182000 95182281 -122854877 + LTR16B LTR ERVL 51 343 -121 1851 251 29 57 chr3 95182325 95182856 -122854302 + MLT2B3 LTR ERVL 1 517 -37 216 111 0 0 chr3 95182856 95182892 -122854266 + (CA)n Simple_repeat Simple_repeat 2 37 0 1851 251 29 57 chr3 95182892 95182922 -122854236 + MLT2B3 LTR ERVL 517 546 -8 2479 85 9 12 chr3 95183147 95183501 -122853657 - THE1A LTR MaLR 0 428 3 11260 105 10 0 chr3 95183503 95185068 -122852090 - THE1A-int LTR MaLR 0 1580 1 2520 99 8 3 chr3 95185068 95185421 -122851737 - THE1A LTR MaLR 0 355 1 2793 127 7 14 chr3 95185523 95185956 -122851202 + MER57B LTR ERV1 1 430 -4 23 54 0 0 chr3 95187153 95187190 -122849968 + AT_rich Low_complexity Low_complexity 1 37 0 1882 120 4 4 chr3 95187390 95187657 -122849501 + AluSx SINE Alu 1 267 -45 802 244 63 80 chr3 95187767 95188131 -122849027 + MLT1D LTR MaLR 4 361 -144 2153 174 41 28 chr3 95188131 95188665 -122848493 + pTR5 LTR ERV1 743 1283 -1155 564 259 64 45 chr3 95188667 95188747 -122848411 + MLT1D LTR MaLR 279 356 -149 4074 129 76 55 chr3 95188747 95189553 -122847605 + LTR12 LTR ERV1 4 826 0 564 259 64 45 chr3 95189553 95189692 -122847466 + MLT1D LTR MaLR 356 502 -3 233 300 11 0 chr3 95190020 95190110 -122847048 + L1ME LINE L1 5762 5852 -269 931 291 33 23 chr3 95190167 95190473 -122846685 + LTR16C LTR ERVL 88 396 -95 24 32 0 0 chr3 95190541 95190572 -122846586 + AT_rich Low_complexity Low_complexity 1 31 0 419 352 73 42 chr3 95192473 95192980 -122844178 - L2 LINE L2 -8 3305 2729 14945 36 7 1 chr3 95193085 95194921 -122842237 - L1PA4 LINE L1 -1103 5043 3197 7519 29 2 0 chr3 95194921 95196015 -122841143 + L1PA4 LINE L1 5059 6154 -1 457 254 44 0 chr3 95196145 95196259 -122840899 - MER58B DNA MER1_type -19 322 204 261 98 0 0 chr3 95196996 95197037 -122840121 + (TG)n Simple_repeat Simple_repeat 2 42 0 1424 209 62 28 chr3 95197061 95197465 -122839693 + MLT1D LTR MaLR 21 484 -21 2486 147 34 5 chr3 95197465 95197881 -122839277 - MSTA LTR MaLR 0 428 1 1424 209 62 28 chr3 95197881 95197904 -122839254 + MLT1D LTR MaLR 484 505 0 213 111 0 28 chr3 95198780 95198816 -122838342 + (CAG)n Simple_repeat Simple_repeat 2 36 0 862 351 104 29 chr3 95199227 95199868 -122837290 - L2 LINE L2 0 3313 2721 1964 149 0 3 chr3 95199868 95200169 -122836989 + AluSx SINE Alu 1 300 -12 862 351 104 29 chr3 95200169 95200223 -122836935 - L2 LINE L2 -592 2721 2672 1490 180 82 56 chr3 95200223 95200601 -122836557 - MLT1B LTR MaLR -2 388 1 862 351 104 29 chr3 95200601 95200855 -122836303 - L2 LINE L2 -641 2672 2278 22 0 0 0 chr3 95201088 95201110 -122836048 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 95201542 95201564 -122835594 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr3 95201676 95201716 -122835442 + AT_rich Low_complexity Low_complexity 1 40 0 24 32 0 0 chr3 95202171 95202202 -122834956 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr3 95202405 95202426 -122834732 + AT_rich Low_complexity Low_complexity 1 21 0 488 230 7 0 chr3 95202830 95202965 -122834193 + (TA)n Simple_repeat Simple_repeat 1 136 0 470 207 11 0 chr3 95203107 95203194 -122833964 + MER58 DNA MER1_type 2325 2412 -8 198 0 0 0 chr3 95203819 95203841 -122833317 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 315 0 0 0 chr3 95203840 95203875 -122833283 + (CA)n Simple_repeat Simple_repeat 1 35 0 971 215 65 10 chr3 95204357 95204659 -122832499 + Tigger4(Zombi) DNA MER2_type 1 2710 -21 222 209 0 0 chr3 95205043 95205086 -122832072 + (CA)n Simple_repeat Simple_repeat 2 44 0 3136 145 7 39 chr3 95205301 95205845 -122831313 - MER1A DNA MER1_type 0 527 1 740 268 145 18 chr3 95206970 95207418 -122829740 + MER20B DNA MER1_type 270 774 -9 207 146 0 0 chr3 95208235 95208276 -122828882 + (TA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr3 95208911 95208932 -122828226 + AT_rich Low_complexity Low_complexity 1 21 0 2368 252 264 1 chr3 95208935 95209234 -122827924 + L1MDa LINE L1 66 285 -6255 213 39 0 0 chr3 95209234 95209260 -122827898 + (CA)n Simple_repeat Simple_repeat 2 27 0 2368 252 264 1 chr3 95209260 95209842 -122827316 + L1MDa LINE L1 285 1179 -5361 31 0 0 0 chr3 95209842 95209873 -122827285 + AT_rich Low_complexity Low_complexity 1 31 0 4713 223 44 33 chr3 95209877 95212053 -122825105 - L1MA9 LINE L1 -39 6273 4084 1664 184 10 3 chr3 95212055 95212360 -122824798 + MER4E LTR ERV1 1 307 -472 1009 230 92 4 chr3 95212370 95212631 -122824527 + L1MD1 LINE L1 5944 6227 -15 1709 227 199 9 chr3 95212830 95213408 -122823750 - MER76 LTR ERV 0 688 1 23 0 0 0 chr3 95214134 95214157 -122823001 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr3 95214559 95214594 -122822564 + AT_rich Low_complexity Low_complexity 1 35 0 1505 46 10 5 chr3 95215124 95215318 -122821840 - AluY SINE Alu -13 298 104 30 45 0 0 chr3 95215338 95215382 -122821776 + AT_rich Low_complexity Low_complexity 1 44 0 2258 253 35 22 chr3 95215700 95216249 -122820909 + L1PA15 LINE L1 1098 1653 -5186 463 221 117 0 chr3 95216258 95216293 -122820865 + L1PA13 LINE L1 2697 2727 -4122 235 0 57 0 chr3 95216293 95216328 -122820830 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 463 221 117 0 chr3 95216328 95216437 -122820721 + L1PA13 LINE L1 2727 2858 -3991 15278 220 18 14 chr3 95216485 95221596 -122815562 + L1PA15 LINE L1 1736 6865 -3 737 244 152 45 chr3 95222173 95223128 -122814030 - L1ME1 LINE L1 -8 6158 4977 2671 142 33 5 chr3 95223128 95223558 -122813600 - Tigger3b DNA MER2_type 0 1231 790 3689 168 24 0 chr3 95223558 95224213 -122812945 - Tigger3b DNA MER2_type -553 678 8 376 198 31 0 chr3 95224238 95224334 -122812824 - L1ME1 LINE L1 -1198 4948 4850 568 241 62 15 chr3 95224343 95224538 -122812620 + L1MD3 LINE L1 7792 7995 0 478 291 19 15 chr3 95224531 95224737 -122812421 - L1ME1 LINE L1 -1284 4862 4656 * 431 125 31 10 chr3 95224744 95224840 -122812318 + T-rich Low_complexity Low_complexity 3 100 0 1799 170 10 13 chr3 95224845 95225157 -122812001 - AluJo SINE Alu -1 311 1 694 249 47 5 chr3 95225157 95225370 -122811788 - L1ME1 LINE L1 -1483 4663 4442 25 31 0 0 chr3 95225437 95225469 -122811689 + AT_rich Low_complexity Low_complexity 1 32 0 803 248 111 21 chr3 95225529 95225763 -122811395 + MER2 DNA MER2_type 91 345 0 499 233 19 79 chr3 95225794 95226112 -122811046 - L1ME1 LINE L1 -3005 3141 2843 1320 174 59 86 chr3 95276183 95276557 -122760601 - MLT1A1 LTR MaLR -1 364 1 667 339 54 12 chr3 95277958 95278291 -122758867 + MLT1I LTR MaLR 63 409 0 1445 118 34 91 chr3 95278603 95278647 -122758511 + Tigger1 DNA MER2_type 573 618 -1800 4309 29 2 4 chr3 95278647 95279163 -122757995 + L1PA3 LINE L1 5638 6152 -3 1445 118 34 91 chr3 95279163 95279414 -122757744 + Tigger1 DNA MER2_type 618 851 -1567 1987 125 3 7 chr3 95279414 95279702 -122757456 + AluSx SINE Alu 1 287 -25 754 100 34 4 chr3 95279702 95279943 -122757215 + (TA)n Simple_repeat Simple_repeat 1 248 0 1433 196 18 31 chr3 95279944 95280271 -122756887 - Tigger1 DNA MER2_type -75 2343 2021 574 329 111 40 chr3 95280507 95281058 -122756100 + L2 LINE L2 1405 1994 -1320 199 314 135 29 chr3 95281088 95281295 -122755863 + L2 LINE L2 2147 2375 -939 336 216 117 53 chr3 95281329 95281500 -122755658 - MER53 DNA DNA 0 189 8 552 349 83 34 chr3 95281623 95282170 -122754988 + L2 LINE L2 2728 3313 0 24 53 0 0 chr3 95283700 95283738 -122753420 + AT_rich Low_complexity Low_complexity 1 38 0 801 232 88 73 chr3 95283889 95284311 -122752847 + MSTC LTR MaLR 1 428 0 39 22 0 0 chr3 95284612 95284658 -122752500 + AT_rich Low_complexity Low_complexity 1 46 0 329 119 0 51 chr3 95284791 95284850 -122752308 + HERVL LTR ERVL 3761 3816 -1838 244 88 0 0 chr3 95284850 95284884 -122752274 + MLT2A2 LTR ERVL 419 452 -1 1912 148 0 0 chr3 95284884 95285161 -122751997 - AluSx SINE Alu -33 279 3 23 33 0 0 chr3 95285265 95285295 -122751863 + AT_rich Low_complexity Low_complexity 1 30 0 207 114 0 0 chr3 95285321 95285356 -122751802 + (CA)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr3 95285390 95285412 -122751746 + AT_rich Low_complexity Low_complexity 1 22 0 1170 331 38 2 chr3 95285449 95285875 -122751283 + L1MA4 LINE L1 1294 1734 -5475 4034 216 52 3 chr3 95285878 95287189 -122749969 + L1MA4 LINE L1 2297 3675 -3533 2457 204 48 33 chr3 95287183 95288248 -122748910 + L1MA4 LINE L1 5774 6858 -507 * 722 142 49 12 chr3 95288348 95288510 -122748648 + L1MA4 LINE L1 7191 7358 -4 2192 96 0 3 chr3 95288519 95288831 -122748327 + AluY SINE Alu 1 311 0 21 36 0 0 chr3 95289761 95289789 -122747369 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr3 95289969 95290009 -122747149 + AT_rich Low_complexity Low_complexity 1 40 0 2185 161 6 6 chr3 95290062 95290422 -122746736 - THE1C LTR MaLR -1 374 15 2288 64 0 17 chr3 95290533 95290830 -122746328 - AluY SINE Alu -19 292 1 31 26 0 0 chr3 95290875 95290913 -122746245 + AT_rich Low_complexity Low_complexity 1 38 0 2646 184 28 14 chr3 95291065 95291571 -122745587 - Tigger1 DNA MER2_type -1904 514 2 2307 67 0 0 chr3 95291573 95291896 -122745262 + AluY SINE Alu 3 325 0 226 385 15 24 chr3 95292753 95292958 -122744200 + MIR SINE MIR 45 247 -15 23 54 0 0 chr3 95293010 95293047 -122744111 + AT_rich Low_complexity Low_complexity 1 37 0 885 124 36 0 chr3 95293215 95293352 -122743806 - L1PA11 LINE L1 -2 6172 6031 697 244 101 12 chr3 95293741 95293999 -122743159 + MER46C DNA MER2_type 55 335 -3 226 259 49 7 chr3 95294083 95294226 -122742932 + (TA)n Simple_repeat Simple_repeat 2 150 0 1391 173 27 0 chr3 95294365 95294625 -122742533 + L1MA8 LINE L1 5920 6186 -105 25 65 0 0 chr3 95294705 95294751 -122742407 + AT_rich Low_complexity Low_complexity 1 46 0 23 33 0 0 chr3 95295558 95295588 -122741570 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr3 95295661 95295684 -122741474 + AT_rich Low_complexity Low_complexity 1 23 0 1850 136 11 7 chr3 95295697 95295983 -122741175 - AluSq SINE Alu -23 290 4 22 94 0 0 chr3 95296135 95296199 -122740959 + AT_rich Low_complexity Low_complexity 1 64 0 548 67 0 0 chr3 95296661 95296736 -122740422 - L1PA5 LINE L1 -4 6150 6076 229 128 128 21 chr3 95296753 95296800 -122740358 - L1PA8 LINE L1 -33 6139 6088 * 6488 66 2 6 chr3 95296784 95297954 -122739204 - L1PA5 LINE L1 -34 6120 4956 * 10151 62 5 1 chr3 95297945 95299257 -122737901 + L1PA5 LINE L1 3614 4930 -1216 31 44 0 0 chr3 95302934 95302979 -122734179 + AT_rich Low_complexity Low_complexity 1 45 0 471 288 49 38 chr3 95303130 95303314 -122733844 - MLT1L LTR MaLR -14 601 416 241 259 0 0 chr3 95304680 95304734 -122732424 + CT-rich Low_complexity Low_complexity 3 56 0 2090 235 77 0 chr3 95304887 95305503 -122731655 + L1MC4 LINE L1 7323 8036 -6 23 0 0 0 chr3 95307436 95307459 -122729699 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 95307836 95307859 -122729299 + AT_rich Low_complexity Low_complexity 1 23 0 1418 167 0 29 chr3 95308015 95308261 -122728897 - AluSx SINE Alu -73 239 1 6463 182 113 38 chr3 95308783 95310250 -122726908 + MER52A LTR ERV1 211 1754 -1 181 295 39 77 chr3 95311601 95311757 -122725401 - MIR SINE MIR -36 226 77 349 259 130 0 chr3 95313755 95313863 -122723295 + L2 LINE L2 3187 3308 -5 285 346 19 0 chr3 95315293 95315400 -122721758 - LTR16B LTR ERVL -2 462 354 466 299 19 63 chr3 95315472 95315679 -122721479 - LTR16B LTR ERVL -266 198 1 301 219 112 17 chr3 95315684 95315825 -122721333 + L1ME1 LINE L1 6002 6160 -6 689 311 105 29 chr3 95315969 95316416 -122720742 - HAL1 LINE L1 -794 1713 1233 264 193 35 0 chr3 95316417 95316474 -122720684 - LTR67 LTR ERVL -5 552 494 1783 146 0 71 chr3 95316921 95317257 -122719901 - AluSx SINE Alu 0 312 1 914 301 6 27 chr3 95317773 95318102 -122719056 + L2 LINE L2 595 916 -2398 479 217 11 85 chr3 95318843 95319032 -122718126 - L1ME1 LINE L1 -43 6123 5949 539 327 40 0 chr3 95319574 95319773 -122717385 + MER63A DNA MER1_type 2 208 -2 331 333 68 80 chr3 95320205 95320643 -122716515 + L2 LINE L2 2818 3250 -63 313 261 43 92 chr3 95320823 95321007 -122716151 - MERVL LTR ERVL -1292 4193 4019 827 273 16 0 chr3 95321833 95322027 -122715131 - MER20B DNA MER1_type -22 197 1 279 0 0 0 chr3 95322641 95322672 -122714486 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2367 79 3 3 chr3 95323976 95324280 -122712878 + AluSg SINE Alu 1 304 -6 248 426 27 14 chr3 95326733 95326881 -122710277 - L2 LINE L2 0 3272 3123 442 210 125 2 chr3 95326961 95327076 -122710082 - L1P4 LINE L1 -526 5639 5514 325 217 0 0 chr3 95327085 95327145 -122710013 + L1M2 LINE L1 5734 5793 -498 279 131 81 20 chr3 95327145 95327244 -122709914 + (TA)n Simple_repeat Simple_repeat 2 106 0 1959 179 5 21 chr3 95327248 95327627 -122709531 + L1PB4 LINE L1 5782 6154 -2 276 379 29 7 chr3 95327746 95327886 -122709272 - L2 LINE L2 -328 2985 2843 1523 230 48 59 chr3 95327912 95328407 -122708751 + MLT1D LTR MaLR 16 505 0 429 395 9 18 chr3 95328413 95328641 -122708517 - L2 LINE L2 -502 2812 2587 765 344 47 22 chr3 95328756 95329163 -122707995 - L2 LINE L2 -1086 2228 1812 24 32 0 0 chr3 95329292 95329323 -122707835 + AT_rich Low_complexity Low_complexity 1 31 0 1571 202 34 7 chr3 95329577 95329874 -122707284 + AluJo SINE Alu 4 308 -4 2330 231 93 34 chr3 95330566 95331509 -122705649 + L1M4c LINE L1 540 1538 -4846 1717 173 14 0 chr3 95331525 95331931 -122705227 - L1P4 LINE L1 -602 5564 5152 2325 137 46 5 chr3 95331993 95332381 -122704777 - Tigger3(Golem) DNA MER2_type -24 3005 2602 814 225 0 0 chr3 95332484 95332635 -122704523 - Tigger3(Golem) DNA MER2_type -2878 151 1 3420 211 98 19 chr3 95332790 95334100 -122703058 - MER52A LTR ERV1 0 1755 1 737 283 121 43 chr3 95334227 95334641 -122702517 - MLT1C LTR MaLR 0 467 22 882 262 46 20 chr3 95334748 95335099 -122702059 - L1M4 LINE L1 -1815 4331 3972 38 89 0 0 chr3 95335212 95335313 -122701845 + AT_rich Low_complexity Low_complexity 1 101 0 542 273 32 56 chr3 95335699 95335915 -122701243 + MIR SINE MIR 32 242 -20 221 322 0 0 chr3 95335918 95335977 -122701181 + L2 LINE L2 3116 3174 -98 284 305 62 23 chr3 95336760 95336888 -122700270 + MER5B DNA MER1_type 37 169 -9 1365 321 42 7 chr3 95337095 95337543 -122699615 + MLT1E2 LTR MaLR 159 622 -4 181 354 83 36 chr3 95337680 95337872 -122699286 + L2 LINE L2 242 442 -2872 2049 125 7 0 chr3 95338819 95339123 -122698035 + AluSq SINE Alu 5 310 -3 349 138 0 62 chr3 95339133 95339213 -122697945 + MER41A LTR ERV1 400 474 -80 26 30 0 0 chr3 95339213 95339246 -122697912 + AT_rich Low_complexity Low_complexity 1 33 0 186 369 216 8 chr3 95339456 95339697 -122697461 + L2 LINE L2 1879 2169 -1145 194 345 55 45 chr3 95339732 95339932 -122697226 + L2 LINE L2 2400 2601 -713 23 78 0 0 chr3 95340360 95340411 -122696747 + AT_rich Low_complexity Low_complexity 1 51 0 1483 161 39 56 chr3 95340422 95340727 -122696431 - AluJo SINE Alu -12 300 1 417 222 11 11 chr3 95341764 95341878 -122695280 + FLAM_A SINE Alu 24 137 0 305 305 80 20 chr3 95342200 95342351 -122694807 - L1MC4a LINE L1 -956 6852 6693 29 28 0 0 chr3 95342462 95342498 -122694660 + AT_rich Low_complexity Low_complexity 1 36 0 2893 261 95 17 chr3 95342915 95344848 -122692310 - L1ME1 LINE L1 -220 6226 4161 2289 195 9 79 chr3 95344864 95345393 -122691765 - MLT2B3 LTR ERVL -4 550 59 309 342 17 17 chr3 95345396 95345516 -122691642 - L1ME1 LINE L1 -4813 1613 1494 382 307 27 31 chr3 95345518 95345743 -122691415 - L1ME1 LINE L1 -4896 1532 1309 1012 311 52 47 chr3 95345894 95346515 -122690643 - L1ME1 LINE L1 -5748 859 236 596 336 123 7 chr3 95347075 95347367 -122689791 - L3 LINE CR1 -12 1565 1240 29 0 0 0 chr3 95347424 95347453 -122689705 + AT_rich Low_complexity Low_complexity 1 29 0 2638 126 12 12 chr3 95347970 95348399 -122688759 - L1PA11 LINE L1 -2194 3952 3524 7807 161 15 27 chr3 95348399 95350611 -122686547 + L1PA11 LINE L1 3956 6172 -2 2309 85 0 19 chr3 95350615 95350931 -122686227 + AluY SINE Alu 1 310 -1 400 273 97 30 chr3 95351928 95352093 -122685065 + L1ME LINE L1 5549 5724 -397 28 61 0 0 chr3 95352093 95352142 -122685016 + AT_rich Low_complexity Low_complexity 1 49 0 1975 233 18 16 chr3 95352190 95352628 -122684530 + MER70B LTR ERVL 3 441 -137 278 358 37 22 chr3 95355224 95355358 -122681800 - MIR SINE MIR -98 164 29 210 211 35 0 chr3 95355562 95355619 -122681539 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 1448 115 41 0 chr3 95355774 95355992 -122681166 + MER30 DNA MER1_type 4 230 0 28 0 0 0 chr3 95356549 95356577 -122680581 + AT_rich Low_complexity Low_complexity 1 28 0 24 68 0 27 chr3 95356609 95356651 -122680507 + AT_rich Low_complexity Low_complexity 1 43 -29 2165 109 0 0 chr3 95356651 95356962 -122680196 + AluSq SINE Alu 1 311 0 24 68 0 27 chr3 95356962 95356992 -122680166 + AT_rich Low_complexity Low_complexity 43 72 0 30 0 0 0 chr3 95357705 95357735 -122679423 + AT_rich Low_complexity Low_complexity 1 30 0 1978 88 0 0 chr3 95358442 95358692 -122678466 - AluY SINE Alu -15 296 47 28 48 0 0 chr3 95358714 95358756 -122678402 + AT_rich Low_complexity Low_complexity 1 42 0 2541 204 67 9 chr3 95358762 95359346 -122677812 - L1MA9 LINE L1 -42 6270 5653 3090 174 31 12 chr3 95359398 95360042 -122677116 + L1 LINE L1 4342 4997 -1149 697 222 59 9 chr3 95360013 95360234 -122676924 + L1M2 LINE L1 4310 4541 -1605 * 581 264 43 34 chr3 95360217 95360419 -122676739 + L1M2 LINE L1 4987 5193 -953 * 1218 225 55 17 chr3 95360419 95360708 -122676450 + AluJo SINE Alu 1 300 -2 581 264 43 34 chr3 95360708 95360740 -122676418 + L1M2 LINE L1 5193 5223 -923 536 181 13 20 chr3 95360748 95360897 -122676261 + GA-rich Low_complexity Low_complexity 1 148 0 783 169 78 0 chr3 95360917 95361083 -122676075 + L1M2 LINE L1 5200 5378 -768 * 1856 71 37 7 chr3 95361077 95361346 -122675812 - L1PA7 LINE L1 -3587 2559 2283 19579 89 2 1 chr3 95361346 95364915 -122672243 + L1PA7 LINE L1 2552 6152 -2 715 181 13 7 chr3 95364962 95365111 -122672047 + L1M2 LINE L1 5366 5515 -797 22 0 0 0 chr3 95365118 95365140 -122672018 + AT_rich Low_complexity Low_complexity 1 22 0 241 214 0 18 chr3 95365849 95365905 -122671253 + (TA)n Simple_repeat Simple_repeat 2 56 0 2054 122 3 3 chr3 95365911 95366206 -122670952 - AluSg SINE Alu -13 297 3 27 62 0 0 chr3 95366705 95366753 -122670405 + AT_rich Low_complexity Low_complexity 1 48 0 516 109 10 20 chr3 95366759 95366860 -122670298 + (TTTC)n Simple_repeat Simple_repeat 4 103 0 1005 83 0 0 chr3 95367047 95367191 -122669967 - L1P LINE L1 -1336 4810 4667 391 129 0 0 chr3 95367192 95367262 -122669896 + L1PA3 LINE L1 6086 6155 0 292 250 14 0 chr3 95368041 95368113 -122669045 + CT-rich Low_complexity Low_complexity 1 73 0 443 193 14 21 chr3 95368137 95368277 -122668881 + CT-rich Low_complexity Low_complexity 2 140 0 441 220 20 16 chr3 95368295 95368553 -122668605 + CT-rich Low_complexity Low_complexity 1 259 0 188 184 20 0 chr3 95369332 95369381 -122667777 + (TA)n Simple_repeat Simple_repeat 2 51 0 423 326 49 40 chr3 95369403 95369627 -122667531 - LTR40a LTR ERVL -87 432 207 474 92 41 20 chr3 95369627 95369725 -122667433 + GA-rich Low_complexity Low_complexity 1 100 0 269 320 13 0 chr3 95370395 95370470 -122666688 - L2 LINE L2 -679 2635 2560 1942 197 176 0 chr3 95370822 95371264 -122665894 + MLT2B1 LTR ERVL 1 520 0 23 33 0 0 chr3 95371609 95371639 -122665519 + AT_rich Low_complexity Low_complexity 1 30 0 529 311 20 25 chr3 95373191 95373387 -122663771 + MIR SINE MIR 9 203 -59 284 304 87 0 chr3 95373376 95373468 -122663690 + MER5B DNA MER1_type 17 116 -62 * 1674 147 14 11 chr3 95373493 95373772 -122663386 + AluSx SINE Alu 1 280 -32 324 0 0 0 chr3 95373775 95373811 -122663347 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 237 316 20 51 chr3 95374871 95374969 -122662189 + MLT1H LTR MaLR 229 323 -226 377 297 48 28 chr3 95375001 95375146 -122662012 + MLT1H LTR MaLR 387 537 -8 1140 256 62 19 chr3 95375573 95375946 -122661212 - MSTD LTR MaLR -1 431 3 862 198 141 0 chr3 95377341 95377568 -122659590 - MER44D DNA MER2_type -80 529 1 2137 76 45 3 chr3 95377816 95378104 -122659054 + AluY SINE Alu 1 300 -11 658 361 17 45 chr3 95378741 95379203 -122657955 - LTR16B LTR ERVL 0 464 16 1784 157 25 0 chr3 95379643 95379923 -122657235 - AluJb SINE Alu -25 287 1 22 0 0 0 chr3 95379925 95379947 -122657211 + AT_rich Low_complexity Low_complexity 1 22 0 2340 53 0 0 chr3 95379954 95380262 -122656896 + AluY SINE Alu 1 308 0 261 157 20 20 chr3 95380402 95380453 -122656705 + Alu SINE Alu 2 52 -256 1709 167 10 16 chr3 95380481 95380787 -122656371 + AluSx SINE Alu 1 304 -8 266 258 53 68 chr3 95381124 95381306 -122655852 + L1M4c LINE L1 1629 1838 -4544 1157 239 125 49 chr3 95381340 95382662 -122654496 + L1ME LINE L1 4356 5822 -342 792 180 93 0 chr3 95383372 95383533 -122653625 + MER3 DNA MER1_type 1 129 -80 258 32 0 0 chr3 95383611 95383642 -122653516 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 1287 249 86 25 chr3 95383646 95384430 -122652728 - L1MC/D LINE L1 -557 5685 4851 1113 146 56 19 chr3 95384503 95384716 -122652442 - THE1C LTR MaLR -154 221 1 288 239 0 0 chr3 95384716 95384787 -122652371 + L1M4c LINE L1 1821 1891 -4492 * 7122 11 0 0 chr3 95384776 95385617 -122651541 + L1PA2 LINE L1 5326 6166 0 801 289 35 29 chr3 95385618 95385960 -122651198 + L1M4c LINE L1 1476 1819 -4565 2202 268 91 12 chr3 95386018 95386283 -122650875 + L1M4c LINE L1 1974 2216 -4166 294 29 0 0 chr3 95386283 95386318 -122650840 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 2202 268 91 12 chr3 95386318 95387312 -122649846 + L1M4c LINE L1 2216 3339 -3043 1994 121 3 0 chr3 95387989 95388293 -122648865 + AluSq SINE Alu 1 305 0 344 22 22 0 chr3 95388702 95388747 -122648411 + (TC)n Simple_repeat Simple_repeat 1 46 0 42 95 0 0 chr3 95388994 95389120 -122648038 + AT_rich Low_complexity Low_complexity 1 126 0 21 36 0 0 chr3 95389802 95389830 -122647328 + AT_rich Low_complexity Low_complexity 1 28 0 219 284 0 0 chr3 95392193 95392260 -122644898 + GA-rich Low_complexity Low_complexity 1 67 0 1031 260 24 9 chr3 95392272 95392576 -122644582 - MLT1E LTR MaLR 0 593 346 500 254 27 0 chr3 95392606 95392716 -122644442 + MLT1E LTR MaLR 409 521 -72 438 319 7 0 chr3 95392891 95393032 -122644126 - L2 LINE L2 -738 2576 2435 2855 178 48 9 chr3 95393313 95393893 -122643265 - LTR26 LTR ERV1 0 603 1 209 333 108 62 chr3 95394788 95395112 -122642046 - L2 LINE L2 -1138 2176 1838 32 57 0 0 chr3 95396033 95396086 -122641072 + AT_rich Low_complexity Low_complexity 1 53 0 41 78 0 0 chr3 95397451 95397541 -122639617 + AT_rich Low_complexity Low_complexity 1 90 0 21 71 0 0 chr3 95397934 95397976 -122639182 + AT_rich Low_complexity Low_complexity 1 42 0 22 70 0 0 chr3 95398950 95398993 -122638165 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr3 95399194 95399222 -122637936 + AT_rich Low_complexity Low_complexity 1 28 0 1973 141 0 0 chr3 95399687 95400010 -122637148 + AluSx SINE Alu 1 323 0 273 29 0 0 chr3 95401262 95401296 -122635862 + (GA)n Simple_repeat Simple_repeat 1 34 0 1353 202 169 3 chr3 95401314 95401651 -122635507 - MLT2C2 LTR ERVL -71 393 1 591 152 9 36 chr3 95401651 95401763 -122635395 - ERVL-C2 LTR ERVL -8 5756 5648 699 156 0 71 chr3 95401864 95402005 -122635153 - ERVL-C2 LTR ERVL -395 5369 5239 375 183 16 0 chr3 95402016 95402104 -122635054 + MLT2C1 LTR ERVL 231 300 -97 370 164 110 0 chr3 95402118 95402191 -122634967 + MLT2D LTR ERVL 8 88 -326 4355 191 42 35 chr3 95402252 95403197 -122633961 - ERVL LTR ERVL -175 5589 4638 2330 93 6 0 chr3 95403200 95403511 -122633647 + AluSq SINE Alu 1 313 0 3283 245 15 3 chr3 95403559 95404434 -122632724 - ERVL LTR ERVL -1806 3958 3036 2329 78 0 3 chr3 95404444 95404738 -122632420 - AluSg SINE Alu -12 298 6 1271 234 67 11 chr3 95404743 95405119 -122632039 + MLT1B-int LTR MaLR 313 709 -662 2318 11 0 0 chr3 95405481 95405748 -122631410 + L1HS LINE L1 5889 6155 0 207 69 0 0 chr3 95405752 95405781 -122631377 + (A)n Simple_repeat Simple_repeat 1 29 0 1648 238 22 6 chr3 95405783 95406144 -122631014 + MLT1B-int LTR MaLR 1003 1369 -2 1524 187 130 6 chr3 95406178 95406509 -122630649 - MSTD LTR MaLR -12 384 13 363 155 0 0 chr3 95406509 95406567 -122630591 - MSTD LTR MaLR -338 58 1 1483 203 15 90 chr3 95406567 95406966 -122630192 + MLT1B LTR MaLR 22 390 0 27 0 0 0 chr3 95406990 95407017 -122630141 + AT_rich Low_complexity Low_complexity 1 27 0 22 70 0 0 chr3 95407207 95407250 -122629908 + AT_rich Low_complexity Low_complexity 1 43 0 342 0 0 0 chr3 95408282 95408320 -122628838 + (TG)n Simple_repeat Simple_repeat 1 38 0 1936 219 40 38 chr3 95408705 95409184 -122627974 - MLT2B3 LTR ERVL 0 554 75 486 103 0 0 chr3 95409283 95409351 -122627807 - MLT2B3 LTR ERVL -486 68 1 22 0 0 0 chr3 95409890 95409912 -122627246 + AT_rich Low_complexity Low_complexity 1 22 0 246 323 0 0 chr3 95410144 95410209 -122626949 + L2 LINE L2 3196 3260 -12 260 299 49 87 chr3 95411226 95411410 -122625748 + L1MEd LINE L1 863 1039 -5377 406 310 65 75 chr3 95411427 95411905 -122625253 + L1MEd LINE L1 856 1328 -5098 497 266 49 43 chr3 95412225 95412409 -122624749 - MLT1F LTR MaLR -2 540 356 397 278 95 30 chr3 95412863 95413126 -122624032 + L1ME3A LINE L1 5683 5962 -208 2169 97 7 0 chr3 95413535 95413825 -122623333 + AluSp SINE Alu 3 294 -19 256 149 15 15 chr3 95414002 95414069 -122623089 + CT-rich Low_complexity Low_complexity 1 67 0 243 88 0 0 chr3 95416161 95416195 -122620963 + (CAATT)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr3 95417128 95417152 -122620006 + AT_rich Low_complexity Low_complexity 1 24 0 35 41 0 0 chr3 95418410 95418459 -122618699 + AT_rich Low_complexity Low_complexity 1 49 0 180 292 31 15 chr3 95418495 95418560 -122618598 + L2 LINE L2 3248 3313 0 255 348 74 7 chr3 95418573 95418708 -122618450 + MIR SINE MIR 49 192 -70 1746 192 52 41 chr3 95418809 95419268 -122617890 - L1MA4 LINE L1 0 6300 5837 490 123 0 0 chr3 95419266 95419339 -122617819 + L1M1 LINE L1 5573 5645 -655 * 6937 55 0 0 chr3 95419411 95420654 -122616504 - L1PA5 LINE L1 -7 6147 4894 5392 71 0 0 chr3 95420654 95421362 -122615796 + L1PA5 LINE L1 4195 4902 -1244 1925 154 0 7 chr3 95421365 95421664 -122615494 - AluSx SINE Alu -15 297 1 358 292 33 8 chr3 95422159 95422279 -122614879 - MER94 DNA DNA 0 134 12 259 257 14 14 chr3 95422736 95422806 -122614352 + CT-rich Low_complexity Low_complexity 1 70 0 499 158 58 6 chr3 95422907 95423078 -122614080 + (TA)n Simple_repeat Simple_repeat 1 180 0 445 80 98 6 chr3 95423103 95423266 -122613892 + (TA)n Simple_repeat Simple_repeat 2 179 0 387 77 38 77 chr3 95423273 95423456 -122613702 + (CATATA)n Simple_repeat Simple_repeat 3 178 0 389 124 99 0 chr3 95423458 95423619 -122613539 + (TA)n Simple_repeat Simple_repeat 2 178 0 288 76 81 41 chr3 95423667 95423839 -122613319 + (TA)n Simple_repeat Simple_repeat 1 179 0 3355 176 16 5 chr3 95423848 95424473 -122612685 + Tigger1 DNA MER2_type 1787 2418 0 231 114 0 0 chr3 95424749 95424784 -122612374 + (CA)n Simple_repeat Simple_repeat 2 36 0 218 239 14 0 chr3 95424853 95424924 -122612234 + (TA)n Simple_repeat Simple_repeat 1 72 0 26 0 0 0 chr3 95426223 95426249 -122610909 + AT_rich Low_complexity Low_complexity 1 26 0 463 307 40 28 chr3 95426575 95426751 -122610407 + L2 LINE L2 1468 1645 -1669 211 350 226 0 chr3 95426773 95426959 -122610199 - L2 LINE L2 -2188 1126 899 3637 189 64 5 chr3 95426988 95428153 -122609005 - L1M1 LINE L1 -565 5735 4507 1426 250 29 5 chr3 95428152 95428564 -122608594 + L1MA4 LINE L1 5872 6293 -7 * 1007 281 48 55 chr3 95428588 95429998 -122607160 + L1MC3 LINE L1 1222 2828 -3598 2452 253 88 20 chr3 95430021 95431779 -122605379 + L1MC3 LINE L1 4436 5681 -745 1862 225 52 2 chr3 95431748 95432224 -122604934 + L1MC3 LINE L1 7467 7966 -99 * 207 309 18 0 chr3 95432394 95432449 -122604709 + L2 LINE L2 3213 3268 -4 570 289 70 16 chr3 95434245 95434432 -122602726 - MIR SINE MIR -64 198 2 1062 274 27 82 chr3 95435383 95435796 -122601362 + MLT1E LTR MaLR 195 584 -9 2721 199 81 16 chr3 95435807 95436688 -122600470 + L1PB4 LINE L1 4710 5719 -437 378 0 0 0 chr3 95436688 95436730 -122600428 + (TA)n Simple_repeat Simple_repeat 2 43 0 2721 199 81 16 chr3 95436730 95437196 -122599962 + L1PB4 LINE L1 5719 6153 -3 1052 273 88 40 chr3 95437198 95437620 -122599538 + ERVL LTR ERVL 4914 5355 -409 23 0 0 0 chr3 95438020 95438043 -122599115 + AT_rich Low_complexity Low_complexity 1 23 0 4228 168 68 14 chr3 95438124 95438993 -122598165 + Tigger3b DNA MER2_type 1 916 -315 538 281 101 68 chr3 95439232 95439688 -122597470 + L1MCa LINE L1 3826 4296 -2130 1726 157 63 33 chr3 95440027 95440391 -122596767 + THE1C LTR MaLR 1 375 0 704 203 0 0 chr3 95440402 95440413 -122596745 - AluJb SINE Alu -179 133 123 237 65 0 0 chr3 95440413 95440444 -122596714 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 704 203 0 0 chr3 95440444 95440565 -122596593 - AluJb SINE Alu -188 124 1 180 179 0 0 chr3 95440712 95440751 -122596407 + (TATG)n Simple_repeat Simple_repeat 4 42 0 226 146 24 0 chr3 95440767 95440808 -122596350 + GA-rich Low_complexity Low_complexity 2 43 0 188 236 36 36 chr3 95441913 95441968 -122595190 - L2 LINE L2 -2 3270 3216 511 330 118 32 chr3 95442917 95443267 -122593891 + L1MEc LINE L1 51 369 -6027 359 73 18 0 chr3 95443267 95443322 -122593836 + (TG)n Simple_repeat Simple_repeat 1 56 0 511 330 118 32 chr3 95443322 95443793 -122593365 + L1MEc LINE L1 369 943 -5453 585 342 87 14 chr3 95443832 95444177 -122592981 + L2 LINE L2 2237 2606 -708 829 298 54 42 chr3 95444385 95444508 -122592650 - L1ME3A LINE L1 -239 6167 6047 2492 201 38 9 chr3 95444508 95445041 -122592117 + MER44D DNA MER2_type 2 604 -1 829 298 54 42 chr3 95445041 95445568 -122591590 - L1ME3A LINE L1 -359 6047 5509 984 253 122 47 chr3 95445663 95446196 -122590962 - L1ME3A LINE L1 -4737 1647 1075 324 292 9 65 chr3 95446197 95446413 -122590745 - L1M4 LINE L1 -1360 4786 4583 271 351 47 14 chr3 95446480 95446691 -122590467 - L1M4 LINE L1 -2008 4138 3921 27 0 0 0 chr3 95447081 95447108 -122590050 + AT_rich Low_complexity Low_complexity 1 27 0 247 259 0 0 chr3 95447260 95447314 -122589844 + L2 LINE L2 2639 2692 -622 36 77 0 0 chr3 95449332 95449410 -122587748 + AT_rich Low_complexity Low_complexity 1 78 0 377 297 58 32 chr3 95449635 95449790 -122587368 - MIR SINE MIR -95 167 9 22 0 0 0 chr3 95450589 95450611 -122586547 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr3 95450710 95450740 -122586418 + AT_rich Low_complexity Low_complexity 1 30 0 197 119 24 0 chr3 95450756 95450798 -122586360 + (TA)n Simple_repeat Simple_repeat 2 44 0 640 149 0 0 chr3 95450798 95450892 -122586266 - AluSg/x SINE Alu -24 288 195 255 344 72 12 chr3 95452265 95452585 -122584573 + HAL1 LINE L1 1251 1589 -918 1103 157 6 0 chr3 95453243 95453421 -122583737 - MER4D LTR ERV1 0 872 694 * 2306 179 10 2 chr3 95453412 95453821 -122583337 - MER4D LTR ERV1 -460 412 1 464 301 121 10 chr3 95453845 95454051 -122583107 - L2 LINE L2 -2061 1253 1025 7401 17 0 1 chr3 95454051 95455065 -122582093 - L1P1 LINE L1 -615 5540 4528 5032 16 0 2 chr3 95455064 95455645 -122581513 + L1HS LINE L1 5576 6155 0 * 252 86 0 0 chr3 95456642 95456677 -122580481 + (TA)n Simple_repeat Simple_repeat 1 35 0 70 41 0 0 chr3 95456758 95456856 -122580302 + AT_rich Low_complexity Low_complexity 1 98 0 419 289 145 26 chr3 95456871 95457716 -122579442 + L1ME LINE L1 607 1531 -4549 2485 271 140 29 chr3 95458011 95458502 -122578656 + L1M4 LINE L1 2889 3324 -2822 2637 170 66 11 chr3 95458502 95459044 -122578114 + L1PB3 LINE L1 5583 6154 0 2485 271 140 29 chr3 95459044 95460335 -122576823 + L1M4 LINE L1 3324 4869 -1277 2256 179 25 51 chr3 95460330 95460351 -122576807 - L1M2 LINE L1 -548 5743 5723 * 2088 136 28 6 chr3 95460351 95460704 -122576454 - THE1B LTR MaLR 0 364 4 2256 179 25 51 chr3 95460704 95461513 -122575645 - L1M2 LINE L1 -568 5723 4938 631 156 8 0 chr3 95461516 95461638 -122575520 + L1MA7 LINE L1 6163 6285 -6 200 347 133 27 chr3 95461942 95462092 -122575066 + MIR SINE MIR 46 211 -51 2038 146 39 17 chr3 95462399 95462755 -122574403 - THE1B LTR MaLR 0 364 1 23 33 0 0 chr3 95462772 95462802 -122574356 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr3 95462978 95463004 -122574154 + AT_rich Low_complexity Low_complexity 1 26 0 32 75 0 0 chr3 95463076 95463143 -122574015 + AT_rich Low_complexity Low_complexity 1 67 0 21 0 0 0 chr3 95463488 95463509 -122573649 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 95463788 95463809 -122573349 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chr3 95464120 95464170 -122572988 + AT_rich Low_complexity Low_complexity 1 50 0 304 338 29 15 chr3 95464829 95464965 -122572193 - MIR SINE MIR -113 149 12 3657 196 114 115 chr3 95465375 95467127 -122570031 + MER52A LTR ERV1 1 1750 -5 195 184 0 0 chr3 95468088 95468126 -122569032 + (TA)n Simple_repeat Simple_repeat 2 39 0 232 263 25 25 chr3 95468180 95468260 -122568898 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 23 54 0 0 chr3 95468327 95468364 -122568794 + AT_rich Low_complexity Low_complexity 1 37 0 361 289 28 63 chr3 95468627 95468911 -122568247 - L1MEc LINE L1 -4821 1563 1290 233 306 101 29 chr3 95468951 95469298 -122567860 - L1MEc LINE L1 -5217 1346 975 289 399 19 11 chr3 95469537 95469798 -122567360 - L1MEc LINE L1 -6027 536 274 818 185 71 119 chr3 95469886 95470281 -122566877 - L1ME LINE L1 -3110 2970 2595 835 297 62 46 chr3 95470281 95471257 -122565901 - L1ME LINE L1 -4691 1570 543 22 0 0 0 chr3 95472320 95472342 -122564816 + AT_rich Low_complexity Low_complexity 1 22 0 2133 108 13 10 chr3 95472556 95472863 -122564295 + AluSq SINE Alu 1 308 -5 4387 154 28 51 chr3 95473044 95473964 -122563194 - Tigger3b DNA MER2_type 0 1231 333 811 232 63 10 chr3 95473983 95474190 -122562968 - AluJb SINE Alu -8 304 87 1461 221 27 3 chr3 95474193 95474523 -122562635 - Tigger3b DNA MER2_type -893 338 1 25 0 0 0 chr3 95476777 95476802 -122560356 + AT_rich Low_complexity Low_complexity 1 25 0 649 315 42 51 chr3 95477453 95477608 -122559550 - L2 LINE L2 -453 2861 2706 2412 59 0 7 chr3 95477608 95477912 -122559246 - AluY SINE Alu -9 302 1 649 315 42 51 chr3 95477912 95478089 -122559069 - L2 LINE L2 -608 2706 2532 724 228 41 32 chr3 95478089 95478308 -122558850 + L1M4 LINE L1 3879 4099 -2047 493 120 0 0 chr3 95478341 95478416 -122558742 + L1MB7 LINE L1 6045 6119 -65 633 174 0 35 chr3 95478422 95478566 -122558592 + L1MB7 LINE L1 6045 6183 -1 330 279 62 16 chr3 95478570 95478699 -122558459 - L2 LINE L2 -803 2511 2377 294 141 14 42 chr3 95478829 95478900 -122558258 - L1MB7 LINE L1 -19 6165 6097 12416 169 43 17 chr3 95478900 95480447 -122556711 - Tigger1 DNA MER2_type 0 2418 789 4368 186 33 0 chr3 95480447 95481113 -122556045 - L1PA4 LINE L1 0 6155 5468 12416 169 43 17 chr3 95481113 95481902 -122555256 - Tigger1 DNA MER2_type -1629 789 22 3217 227 46 12 chr3 95481906 95482827 -122554331 - L1MB7 LINE L1 -84 6100 5139 404 332 106 19 chr3 95482974 95483239 -122553919 - L2 LINE L2 -1103 2211 1924 23 33 0 0 chr3 95483687 95483717 -122553441 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr3 95484242 95484264 -122552894 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 95485043 95485064 -122552094 + AT_rich Low_complexity Low_complexity 1 21 0 240 408 0 0 chr3 95485269 95485389 -122551769 - MIR SINE MIR -137 125 6 253 276 57 9 chr3 95485920 95486025 -122551133 - MLT1J2 LTR MaLR -272 178 69 2430 193 23 68 chr3 95486487 95487149 -122550009 + L1MA10 LINE L1 5701 6332 -2 24 32 0 0 chr3 95487315 95487346 -122549812 + AT_rich Low_complexity Low_complexity 1 31 0 342 115 0 0 chr3 95487782 95487834 -122549324 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 240 354 36 0 chr3 95488918 95489038 -122548120 - MIR SINE MIR -39 169 45 209 290 60 40 chr3 95489269 95489369 -122547789 + MIR SINE MIR 102 203 -59 29 0 0 0 chr3 95489985 95490014 -122547144 + AT_rich Low_complexity Low_complexity 1 29 0 276 131 33 0 chr3 95491139 95491200 -122545958 - L1MB8 LINE L1 -2 6176 6114 186 103 0 0 chr3 95491205 95491234 -122545924 + (TA)n Simple_repeat Simple_repeat 1 29 0 531 250 5 113 chr3 95491250 95491462 -122545696 - L1ME1 LINE L1 -167 6068 5880 875 299 61 8 chr3 95491547 95491942 -122545216 - L1ME1 LINE L1 -2256 3959 3544 473 236 46 23 chr3 95492038 95492254 -122544904 - L1ME1 LINE L1 -4151 2245 2025 464 262 73 46 chr3 95492764 95493066 -122544092 - HsTC2 DNA Tc2 -116 1782 1297 21 0 0 0 chr3 95493127 95493148 -122544010 + AT_rich Low_complexity Low_complexity 1 21 0 292 246 18 88 chr3 95493180 95493294 -122543864 - L2 LINE L2 -8 3305 3200 21 36 0 0 chr3 95493516 95493544 -122543614 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr3 95494434 95494466 -122542692 + AT_rich Low_complexity Low_complexity 1 32 0 3632 38 0 2 chr3 95495787 95496232 -122540926 + L1PA5 LINE L1 5708 6151 -3 1569 189 154 9 chr3 95496269 95496619 -122540539 - MSTA LTR MaLR 0 428 28 225 152 87 0 chr3 95496642 95496688 -122540470 - MSTA LTR MaLR -376 52 3 5842 26 6 0 chr3 95497557 95498249 -122538909 - L1PA4 LINE L1 -1 6154 5459 27 62 0 0 chr3 95499466 95499514 -122537644 + AT_rich Low_complexity Low_complexity 1 48 0 279 111 95 32 chr3 95500840 95500903 -122536255 + MLT1A1 LTR MaLR 1 67 -298 * 976 210 0 5 chr3 95500892 95501078 -122536080 + MLT1A1 LTR MaLR 179 363 -2 2028 74 15 71 chr3 95501770 95502094 -122535064 - AluSx SINE Alu -6 306 1 35 54 0 0 chr3 95502168 95502224 -122534934 + AT_rich Low_complexity Low_complexity 1 56 0 25 51 0 0 chr3 95502409 95502448 -122534710 + AT_rich Low_complexity Low_complexity 1 39 0 228 135 0 0 chr3 95503052 95503089 -122534069 + (TG)n Simple_repeat Simple_repeat 2 38 0 2003 75 0 0 chr3 95503108 95503362 -122533796 - AluY SINE Alu -8 303 50 203 306 75 58 chr3 95504944 95505117 -122532041 + L2 LINE L2 3081 3256 -57 271 335 190 10 chr3 95506380 95506574 -122530584 - L2 LINE L2 -252 3061 2832 328 263 100 88 chr3 95506574 95506893 -122530265 - MER5C DNA MER1_type -1 323 1 189 107 0 0 chr3 95506917 95506945 -122530213 + (T)n Simple_repeat Simple_repeat 1 28 0 863 328 69 20 chr3 95506945 95507350 -122529808 - L2 LINE L2 -540 2774 2350 1337 268 84 31 chr3 95507365 95507802 -122529356 - MLT1E LTR MaLR -2 591 115 183 42 0 0 chr3 95507802 95507826 -122529332 + (CATAA)n Simple_repeat Simple_repeat 2 25 0 1337 268 84 31 chr3 95507826 95507948 -122529210 - MLT1E LTR MaLR -478 115 1 328 330 11 0 chr3 95507950 95508044 -122529114 - L2 LINE L2 -987 2327 2233 1744 227 10 94 chr3 95508300 95508877 -122528281 + LTR8 LTR ERV1 1 529 -162 4384 84 2 0 chr3 95508877 95509461 -122527697 + L1PA13 LINE L1 5551 6135 -28 844 224 18 12 chr3 95509531 95509701 -122527457 + LTR8 LTR ERV1 521 691 0 455 318 26 34 chr3 95509701 95509928 -122527230 + LTR33 LTR ERVL 297 521 0 333 298 121 21 chr3 95510687 95510828 -122526330 + MIR SINE MIR 93 247 -15 29 70 0 0 chr3 95512491 95512548 -122524610 + AT_rich Low_complexity Low_complexity 1 57 0 33 0 0 0 chr3 95512746 95512779 -122524379 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr3 95514133 95514155 -122523003 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 95514980 95515008 -122522150 + AT_rich Low_complexity Low_complexity 1 28 0 31 26 0 0 chr3 95515092 95515130 -122522028 + AT_rich Low_complexity Low_complexity 1 38 0 262 389 112 16 chr3 95515847 95516168 -122520990 - L2 LINE L2 -2626 688 337 358 96 0 0 chr3 95517271 95517323 -122519835 - L1PA15 LINE L1 -222 5943 5892 261 0 0 0 chr3 95518400 95518429 -122518729 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 2609 150 5 2 chr3 95518449 95518876 -122518282 - L1PA16 LINE L1 -9 6157 5730 12049 197 18 39 chr3 95518878 95520738 -122516420 + L1M1 LINE L1 2511 4281 -2024 628 139 90 0 chr3 95520738 95520860 -122516298 + L1MA3 LINE L1 6162 6294 -11 12049 197 18 39 chr3 95520860 95522157 -122515001 + L1M1 LINE L1 4281 5603 -702 3788 165 25 28 chr3 95522271 95523068 -122514090 + L1MA2 LINE L1 5190 5984 -321 2176 80 13 0 chr3 95523057 95523358 -122513800 - L1PA7 LINE L1 -1670 4476 4172 * 6548 79 9 2 chr3 95523358 95525044 -122512114 + L1PA7 LINE L1 4462 6153 -1 1700 143 6 56 chr3 95525048 95525405 -122511753 + L1MA2 LINE L1 5966 6304 0 649 176 32 0 chr3 95525409 95525534 -122511624 - L1P4 LINE L1 -575 5591 5463 222 177 0 32 chr3 95525534 95525596 -122511562 + (TAA)n Simple_repeat Simple_repeat 2 61 0 1855 185 15 61 chr3 95526103 95526563 -122510595 + L1MB3 LINE L1 5744 6182 -1 261 83 0 0 chr3 95527243 95527279 -122509879 + (TG)n Simple_repeat Simple_repeat 1 36 0 239 114 23 0 chr3 95528050 95528094 -122509064 + GA-rich Low_complexity Low_complexity 2 46 0 209 161 0 65 chr3 95528099 95528161 -122508997 + A-rich Low_complexity Low_complexity 4 61 0 33 0 0 0 chr3 95528705 95528738 -122508420 + AT_rich Low_complexity Low_complexity 1 33 0 310 350 29 43 chr3 95529300 95529577 -122507581 - L2 LINE L2 -905 2409 2137 254 276 92 31 chr3 95530939 95531102 -122506056 - MER31B LTR ERV1 -21 445 273 504 224 68 14 chr3 95531139 95531286 -122505872 - MER31B LTR ERV1 -311 155 1 293 339 58 8 chr3 95532152 95532273 -122504885 - L2 LINE L2 -1 3271 3145 270 0 0 0 chr3 95532348 95532378 -122504780 + (TG)n Simple_repeat Simple_repeat 2 31 0 214 296 0 0 chr3 95532674 95532728 -122504430 - MER5A DNA MER1_type -8 181 128 382 339 68 0 chr3 95532755 95532873 -122504285 - MER5A DNA MER1_type -57 132 7 840 310 70 42 chr3 95533520 95534237 -122502921 - L1MC4 LINE L1 -144 7898 7162 21 57 0 0 chr3 95534237 95534272 -122502886 + AT_rich Low_complexity Low_complexity 1 35 0 300 374 51 23 chr3 95534621 95534835 -122502323 - MIR SINE MIR -41 221 2 180 0 0 0 chr3 95535983 95536003 -122501155 + (A)n Simple_repeat Simple_repeat 1 20 0 246 333 13 0 chr3 95536053 95536128 -122501030 + MER21B LTR ERV1 235 310 -553 * 284 359 22 0 chr3 95536095 95536187 -122500971 + MER77 LTR ERV1 277 370 -235 1045 313 42 67 chr3 95539406 95539902 -122497256 - MER115 DNA AcHobo -1 692 209 237 347 105 8 chr3 95540028 95540152 -122497006 - MIR SINE MIR -82 180 45 510 100 33 33 chr3 95540557 95540607 -122496551 + MLT2B3 LTR ERVL 465 514 -40 1014 81 35 0 chr3 95540607 95540780 -122496378 + (TATG)n Simple_repeat Simple_repeat 2 180 0 408 40 0 0 chr3 95540779 95540829 -122496329 + (TCTA)n Simple_repeat Simple_repeat 3 52 0 * 510 100 33 33 chr3 95540780 95540868 -122496290 + MLT2B3 LTR ERVL 513 554 0 778 237 39 25 chr3 95540900 95541186 -122495972 + MLT1B LTR MaLR 85 468 -37 26 0 0 0 chr3 95543633 95543659 -122493499 + AT_rich Low_complexity Low_complexity 1 26 0 48 32 0 0 chr3 95543891 95543953 -122493205 + AT_rich Low_complexity Low_complexity 1 62 0 642 294 103 91 chr3 95545348 95546136 -122491022 - ERVL LTR ERVL -1409 4355 3559 486 294 16 0 chr3 95546132 95546258 -122490900 - ERVL LTR ERVL -2293 3361 3234 * 1212 238 57 72 chr3 95546365 95546824 -122490334 - MLT1D LTR MaLR -53 452 1 22 35 0 0 chr3 95547008 95547037 -122490121 + AT_rich Low_complexity Low_complexity 1 29 0 2019 249 67 86 chr3 95547744 95548764 -122488394 - L1MC3 LINE L1 -767 7018 6019 200 246 18 0 chr3 95549019 95549076 -122488082 + (TAAA)n Simple_repeat Simple_repeat 4 61 0 280 253 47 60 chr3 95549311 95549461 -122487697 + MLT1H LTR MaLR 67 214 -335 248 325 26 52 chr3 95549568 95549762 -122487396 + MLT1H LTR MaLR 361 549 0 1227 214 52 11 chr3 95550270 95550576 -122486582 + AluJo SINE Alu 1 317 0 498 208 10 10 chr3 95550982 95551083 -122486075 + Tigger3b DNA MER2_type 2 102 -1129 4918 151 23 35 chr3 95551095 95552046 -122485112 + Tigger3b DNA MER2_type 289 1228 -3 198 103 0 0 chr3 95552221 95552250 -122484908 + (TA)n Simple_repeat Simple_repeat 1 29 0 32 26 0 0 chr3 95552605 95552644 -122484514 + AT_rich Low_complexity Low_complexity 1 39 0 28 61 0 0 chr3 95552697 95552746 -122484412 + AT_rich Low_complexity Low_complexity 1 49 0 1344 251 112 26 chr3 95552926 95553381 -122483777 + MLT1D LTR MaLR 6 499 -6 356 314 90 32 chr3 95554087 95554243 -122482915 + MIR SINE MIR 64 228 -34 7626 188 37 22 chr3 95554664 95554939 -122482219 + L1PA16 LINE L1 3218 3487 -2679 228 35 0 0 chr3 95554939 95554968 -122482190 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 7626 188 37 22 chr3 95554968 95557605 -122479553 + L1PA16 LINE L1 3487 6166 0 354 312 0 24 chr3 95558576 95558701 -122478457 + CT-rich Low_complexity Low_complexity 4 125 0 29 28 0 0 chr3 95560021 95560057 -122477101 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 95560282 95560303 -122476855 + AT_rich Low_complexity Low_complexity 1 21 0 1569 178 72 0 chr3 95560878 95561182 -122475976 - MER52A LTR ERV1 0 1755 1430 * 2983 218 27 26 chr3 95561175 95562009 -122475149 - MER52A LTR ERV1 -688 590 26 21 57 0 0 chr3 95562470 95562505 -122474653 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr3 95562772 95562810 -122474348 + AT_rich Low_complexity Low_complexity 1 38 0 673 322 40 19 chr3 95563592 95563915 -122473243 + L2 LINE L2 668 997 -2317 3270 44 2 2 chr3 95563937 95564349 -122472809 - L1HS LINE L1 0 6155 5744 512 291 96 25 chr3 95564450 95564856 -122472302 - L1M4 LINE L1 -1603 4543 4109 407 235 39 46 chr3 95565266 95565419 -122471739 - MLT2F LTR ERVL -277 386 235 338 269 32 32 chr3 95565421 95565514 -122471644 - MLT2F LTR ERVL -382 281 189 220 204 0 0 chr3 95566242 95566286 -122470872 + (TG)n Simple_repeat Simple_repeat 2 45 0 501 283 43 11 chr3 95566335 95566522 -122470636 + MLT1I LTR MaLR 5 197 -212 1431 223 94 25 chr3 95566652 95566858 -122470300 - MSTB LTR MaLR -1 425 235 1355 55 0 11 chr3 95566858 95567040 -122470118 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1431 223 94 25 chr3 95567040 95567228 -122469930 - MSTB LTR MaLR -191 235 4 251 185 0 56 chr3 95567310 95567364 -122469794 + AluSg/x SINE Alu 118 168 -132 2151 114 3 3 chr3 95568076 95568383 -122468775 - AluSp SINE Alu -4 309 3 609 282 89 53 chr3 95568686 95569066 -122468092 - LTR68 LTR ERV1 -346 394 1 3114 228 38 84 chr3 95569218 95570366 -122466792 - L1MD2 LINE L1 -65 6294 5213 6257 93 10 3 chr3 95570548 95573727 -122463431 - L1PA7 LINE L1 0 6154 2774 3613 235 83 37 chr3 95573828 95575085 -122462073 + MER57-int LTR ERV1 4717 6030 -301 679 279 12 30 chr3 95575085 95575262 -122461896 + MER57-int LTR ERV1 6812 6991 -825 1468 149 0 98 chr3 95575262 95575598 -122461560 + AluSx SINE Alu 10 312 0 679 279 12 30 chr3 95575598 95575765 -122461393 + MER57-int LTR ERV1 6991 7325 -491 588 251 38 13 chr3 95575782 95576103 -122461055 + MER93b LTR ERV1 5 362 -11 222 226 39 10 chr3 95576865 95576967 -122460191 + (TA)n Simple_repeat Simple_repeat 2 106 0 21 0 0 0 chr3 95576967 95576988 -122460170 + AT_rich Low_complexity Low_complexity 1 21 0 498 177 19 177 chr3 95577099 95577308 -122459850 + MER5A DNA MER1_type 12 187 -2 1748 167 13 35 chr3 95578797 95579109 -122458049 + AluJo SINE Alu 4 308 -4 1370 127 0 0 chr3 95579125 95579337 -122457821 + L1P LINE L1 4615 4826 -1320 21 0 0 0 chr3 95579747 95579768 -122457390 + AT_rich Low_complexity Low_complexity 1 21 0 1041 295 75 7 chr3 95580289 95580743 -122456415 - L1ME LINE L1 -347 5817 5333 261 180 0 0 chr3 95580899 95580949 -122456209 - L1MB4 LINE L1 -32 6148 6099 3746 172 21 162 chr3 95580963 95581976 -122455182 - L1MA4 LINE L1 -280 6202 5047 243 61 0 0 chr3 95581976 95582009 -122455149 + (CA)n Simple_repeat Simple_repeat 2 34 0 3746 172 21 162 chr3 95582009 95582299 -122454859 - L1MA4 LINE L1 -1435 5047 5090 772 252 0 0 chr3 95582299 95582458 -122454700 + FRAM SINE Alu 5 163 -13 3746 172 21 162 chr3 95582458 95582981 -122454177 - L1MA4 LINE L1 -1391 5091 4496 * 5037 164 42 16 chr3 95582980 95584183 -122452975 - L1PA16 LINE L1 -3 6163 4924 7712 222 35 38 chr3 95584189 95588645 -122448513 - L1MA4 LINE L1 -1917 4411 3 1909 129 3 0 chr3 95588768 95589062 -122448096 - L1PA13 LINE L1 -7 6156 5862 2737 116 5 0 chr3 95589067 95589472 -122447686 + L1PA13 LINE L1 5452 5858 -310 414 293 80 16 chr3 95589605 95589980 -122447178 - L1M4 LINE L1 -3111 3035 2637 718 237 0 9 chr3 95590025 95590232 -122446926 + L1 LINE L1 2126 2323 -3823 181 234 43 0 chr3 95590247 95590294 -122446864 - MIR SINE MIR -94 168 120 641 268 13 100 chr3 95590338 95590453 -122446705 - MLT2C1 LTR ERVL -124 273 150 6034 72 14 24 chr3 95590453 95590709 -122446449 - L1PA7 LINE L1 -6 6148 5891 2213 117 3 0 chr3 95590709 95591017 -122446141 - AluSg SINE Alu -1 309 1 6034 72 14 24 chr3 95591017 95591767 -122445391 - L1PA7 LINE L1 -263 5891 5118 641 268 13 100 chr3 95591767 95591950 -122445208 - MLT2C1 LTR ERVL -247 150 1 726 293 74 87 chr3 95592169 95592790 -122444368 - MER21B LTR ERV1 -217 646 34 617 191 90 142 chr3 95593333 95593600 -122443558 + MLT1B LTR MaLR 1 253 -137 1892 223 11 132 chr3 95593667 95594407 -122442751 + MLT1B-int LTR MaLR 5 654 -1081 269 246 15 0 chr3 95594412 95594477 -122442681 + MLT1B-int LTR MaLR 819 884 -487 2134 231 9 9 chr3 95594786 95595228 -122441930 + MLT1B-int LTR MaLR 1294 1735 0 979 249 22 94 chr3 95595228 95595642 -122441516 + MLT1B LTR MaLR 1 384 -6 202 211 46 0 chr3 95595644 95595753 -122441405 + (TA)n Simple_repeat Simple_repeat 1 114 0 22 35 0 0 chr3 95596051 95596080 -122441078 + AT_rich Low_complexity Low_complexity 1 29 0 244 91 0 23 chr3 95596246 95596287 -122440871 - MSTC LTR MaLR 0 428 389 443 101 130 0 chr3 95596287 95596356 -122440802 + THE1B LTR MaLR 1 78 -286 1821 173 7 3 chr3 95596464 95596770 -122440388 + THE1B LTR MaLR 58 364 0 9044 142 36 28 chr3 95596772 95598337 -122438821 + THE1B-int LTR MaLR 3 1580 0 2355 128 17 0 chr3 95598337 95598695 -122438463 + THE1B LTR MaLR 1 364 0 1974 186 20 23 chr3 95598697 95599089 -122438069 - MSTC LTR MaLR -37 391 1 385 236 94 80 chr3 95599890 95600166 -122436992 - LTR68 LTR ERV1 -460 280 1 1595 156 58 46 chr3 95600187 95600298 -122436860 - MER7A DNA MER2_type -2693 345 237 1378 195 23 55 chr3 95600298 95600646 -122436512 - MER1B DNA MER1_type 0 337 1 1595 156 58 46 chr3 95600646 95600862 -122436296 - MER7A DNA MER2_type -2801 237 16 1225 284 165 26 chr3 95602601 95603632 -122433526 - L1M4 LINE L1 -919 5227 4054 1512 260 55 45 chr3 95603742 95604435 -122432723 - L1M4 LINE L1 -1031 5115 4416 496 135 0 0 chr3 95604444 95604533 -122432625 - AluS SINE Alu 0 310 222 255 324 75 50 chr3 95604941 95605219 -122431939 - L1MEc LINE L1 -6032 364 80 6617 76 8 0 chr3 95605329 95606481 -122430677 + L1PA7 LINE L1 4997 6154 0 315 0 0 0 chr3 95606518 95606553 -122430605 + (TG)n Simple_repeat Simple_repeat 1 35 0 2168 142 19 25 chr3 95606667 95607033 -122430125 - THE1B LTR MaLR 0 364 1 8184 128 8 7 chr3 95607033 95608245 -122428913 - THE1B-int LTR MaLR 0 1580 367 2181 176 29 17 chr3 95608270 95608987 -122428171 - L1P4 LINE L1 -388 5777 4970 252 0 0 0 chr3 95609406 95609434 -122427724 + (CA)n Simple_repeat Simple_repeat 1 28 0 1608 264 55 49 chr3 95611211 95612074 -122425084 + L1MDa LINE L1 1344 2211 -4329 1432 299 35 10 chr3 95612112 95612708 -122424450 + L1MDa LINE L1 2572 3182 -3358 1085 140 11 17 chr3 95613201 95613379 -122423779 + AluSx SINE Alu 3 179 -133 1326 103 0 0 chr3 95613521 95613706 -122423452 + L1PA13 LINE L1 5958 6142 -21 243 0 0 0 chr3 95613713 95613740 -122423418 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr3 95613754 95613777 -122423381 + AT_rich Low_complexity Low_complexity 1 23 0 302 279 171 36 chr3 95614222 95614473 -122422685 - L1MC5 LINE L1 -197 7764 7480 2151 132 0 0 chr3 95614484 95614787 -122422371 - AluSg SINE Alu -7 303 1 1164 44 0 0 chr3 95614787 95614922 -122422236 - AluSq/x SINE Alu -177 135 1 21 57 0 0 chr3 95615171 95615206 -122421952 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 95616003 95616026 -122421132 + AT_rich Low_complexity Low_complexity 1 23 0 506 43 0 14 chr3 95616859 95616929 -122420229 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 213 139 28 0 chr3 95616956 95616992 -122420166 + (CATATA)n Simple_repeat Simple_repeat 4 40 0 22 35 0 0 chr3 95617044 95617073 -122420085 + AT_rich Low_complexity Low_complexity 1 29 0 35 24 0 0 chr3 95618873 95618915 -122418243 + AT_rich Low_complexity Low_complexity 1 42 0 26592 109 14 6 chr3 95619356 95624257 -122412901 - L1PA7 LINE L1 -4 6150 1219 27 49 0 0 chr3 95625101 95625142 -122412016 + AT_rich Low_complexity Low_complexity 1 41 0 1476 104 35 0 chr3 95625989 95626191 -122410967 + AluSq SINE Alu 22 230 -83 236 247 22 0 chr3 95626859 95626948 -122410210 + L1MC4 LINE L1 6612 6702 -1340 231 174 0 0 chr3 95626965 95627011 -122410147 - LTR66 LTR ERVL -171 439 394 40 21 0 0 chr3 95627575 95627622 -122409536 + AT_rich Low_complexity Low_complexity 1 47 0 1913 196 89 13 chr3 95627635 95628084 -122409074 - MER31A LTR ERV1 -2 483 1 1950 101 66 3 chr3 95628123 95628410 -122408748 - AluSq SINE Alu -7 306 2 6011 46 0 24 chr3 95630000 95630840 -122406318 - L1PA4 LINE L1 -2 6153 5370 1205 116 0 90 chr3 95630837 95631105 -122406053 + L1PA4 LINE L1 5145 5388 -758 * 5378 31 0 0 chr3 95631274 95631910 -122405248 - L1PA4 LINE L1 -150 6005 5370 1671 49 0 87 chr3 95631907 95632173 -122404985 + L1PA4 LINE L1 5145 5387 -759 * 232 250 28 14 chr3 95632399 95632471 -122404687 - MLT1I LTR MaLR 0 409 337 2007 126 67 14 chr3 95633653 95634009 -122403149 - THE1C LTR MaLR 0 375 1 30 45 0 0 chr3 95635256 95635300 -122401858 + AT_rich Low_complexity Low_complexity 1 44 0 1283 156 149 127 chr3 95635572 95635659 -122401499 + MLT1C LTR MaLR 1 85 -382 2093 136 0 16 chr3 95635659 95635976 -122401182 + AluSx SINE Alu 1 312 0 1283 156 149 127 chr3 95635976 95636344 -122400814 + MLT1C LTR MaLR 85 466 -1 1749 175 93 13 chr3 95636456 95636834 -122400324 - MLT2C2 LTR ERVL -48 416 9 430 332 77 13 chr3 95637067 95637302 -122399856 + L1ME LINE L1 5478 5727 -435 207 204 0 0 chr3 95638595 95638639 -122398519 + (TA)n Simple_repeat Simple_repeat 2 45 0 289 239 30 15 chr3 95638896 95638963 -122398195 + MER77 LTR ERV1 310 377 -228 26 0 0 0 chr3 95639352 95639378 -122397780 + AT_rich Low_complexity Low_complexity 1 26 0 790 137 18 219 chr3 95639382 95639710 -122397448 - MLT1B LTR MaLR 0 390 129 22 35 0 0 chr3 95640150 95640179 -122396979 + AT_rich Low_complexity Low_complexity 1 29 0 590 279 138 24 chr3 95640797 95641393 -122395765 + L1M4 LINE L1 2161 2824 -3322 42 0 0 0 chr3 95641411 95641453 -122395705 + AT_rich Low_complexity Low_complexity 1 42 0 448 300 34 51 chr3 95641467 95641997 -122395161 + L1M4 LINE L1 2795 3315 -2831 1584 236 67 8 chr3 95642203 95642593 -122394565 + MSTB LTR MaLR 10 422 -4 546 137 42 0 chr3 95642746 95642841 -122394317 + MSTB LTR MaLR 316 414 -12 206 57 57 0 chr3 95642841 95642876 -122394282 + A-rich Low_complexity Low_complexity 6 42 0 34 42 0 0 chr3 95642966 95643014 -122394144 + AT_rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr3 95643370 95643394 -122393764 + AT_rich Low_complexity Low_complexity 1 24 0 2800 236 29 5 chr3 95643755 95644387 -122392771 - MER82 DNA MER2_type 0 653 7 26 64 0 0 chr3 95644446 95644493 -122392665 + AT_rich Low_complexity Low_complexity 1 47 0 284 98 78 0 chr3 95645355 95645406 -122391752 - MLT2A2 LTR ERVL 0 453 399 340 291 0 0 chr3 95645406 95645492 -122391666 + L1MC4 LINE L1 6617 6702 -1340 1981 178 38 30 chr3 95645497 95646000 -122391158 - MLT2A2 LTR ERVL -44 510 1 26 0 0 0 chr3 95646294 95646320 -122390838 + AT_rich Low_complexity Low_complexity 1 26 0 891 200 98 102 chr3 95647135 95647721 -122389437 - MER31-int LTR ERV1 -1412 4490 2705 2403 50 0 13 chr3 95649273 95649571 -122387587 + AluY SINE Alu 7 300 -11 34 24 0 0 chr3 95650808 95650849 -122386309 + AT_rich Low_complexity Low_complexity 1 41 0 261 247 78 0 chr3 95652684 95652761 -122384397 - MLT1A1 LTR MaLR -13 582 500 962 239 28 83 chr3 95652995 95653355 -122383803 - MLT1A1 LTR MaLR -16 349 10 190 275 73 110 chr3 95655003 95655112 -122382046 + L2 LINE L2 3168 3272 0 216 86 0 0 chr3 95655667 95655702 -122381456 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 459 327 13 0 chr3 95655830 95655983 -122381175 - MLT1J LTR MaLR -280 231 77 438 200 11 0 chr3 95656151 95656246 -122380912 + MLT2D LTR ERVL 1 96 -318 432 253 62 20 chr3 95656265 95656411 -122380747 - L1MA9 LINE L1 -30 6282 6131 1179 232 21 14 chr3 95656428 95656712 -122380446 + MLT2D LTR ERVL 79 364 -50 222 37 0 0 chr3 95656712 95656739 -122380419 + (TC)n Simple_repeat Simple_repeat 2 28 0 327 25 0 0 chr3 95656742 95656782 -122380376 + (CA)n Simple_repeat Simple_repeat 1 40 0 446 316 131 33 chr3 95657278 95657613 -122379545 - MLT1H LTR MaLR -4 545 178 871 343 42 33 chr3 95659768 95660226 -122376932 + L2 LINE L2 2446 2907 -407 231 36 0 0 chr3 95660399 95660427 -122376731 + (TA)n Simple_repeat Simple_repeat 2 29 0 337 83 0 33 chr3 95660469 95660529 -122376629 + (TA)n Simple_repeat Simple_repeat 1 58 0 2876 182 17 13 chr3 95660537 95661193 -122375965 + L1MC/D LINE L1 4812 5467 -743 1772 143 7 0 chr3 95661225 95661533 -122375625 + AluJb SINE Alu 1 310 0 26 30 0 0 chr3 95664622 95664655 -122372503 + AT_rich Low_complexity Low_complexity 1 33 0 220 382 93 62 chr3 95665013 95665445 -122371713 + L2 LINE L2 2183 2627 -687 27 29 0 0 chr3 95666134 95666168 -122370990 + AT_rich Low_complexity Low_complexity 1 34 0 192 97 0 0 chr3 95666335 95666366 -122370792 + (TCCCC)n Simple_repeat Simple_repeat 5 35 0 307 284 9 89 chr3 95666938 95667163 -122369995 - L1MC/D LINE L1 -2530 5512 5306 1034 315 130 21 chr3 95667186 95667326 -122369832 + MLT2F LTR ERVL 26 149 -514 1560 174 161 16 chr3 95667326 95667699 -122369459 + MSTA LTR MaLR 2 428 0 1034 315 130 21 chr3 95667699 95668034 -122369124 + MLT2F LTR ERVL 149 553 -110 216 179 30 15 chr3 95668068 95668135 -122369023 + (TA)n Simple_repeat Simple_repeat 1 68 0 281 192 0 0 chr3 95668156 95668208 -122368950 + MLT2F LTR ERVL 612 663 0 549 282 41 6 chr3 95668268 95668438 -122368720 - MER5A DNA MER1_type -13 176 1 316 341 93 11 chr3 95668726 95668908 -122368250 - L1MC/D LINE L1 -1318 4828 4632 21 0 0 0 chr3 95668913 95668934 -122368224 + AT_rich Low_complexity Low_complexity 1 21 0 617 211 9 0 chr3 95668960 95669074 -122368084 - AluJb SINE Alu -21 291 177 23 0 0 0 chr3 95669512 95669535 -122367623 + AT_rich Low_complexity Low_complexity 1 23 0 1488 190 10 10 chr3 95670386 95670676 -122366482 + L1P3 LINE L1 3 292 -5583 198 0 0 0 chr3 95670768 95670790 -122366368 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 419 217 0 12 chr3 95671578 95671661 -122365497 - Tigger5 DNA MER2_type 0 2323 2242 348 244 0 13 chr3 95671651 95671729 -122365429 + Tigger5 DNA MER2_type 2242 2318 -5 * 387 250 0 0 chr3 95671728 95671808 -122365350 - Tigger5 DNA MER2_type -2243 80 1 26 0 0 0 chr3 95671850 95671876 -122365282 + AT_rich Low_complexity Low_complexity 1 26 0 4310 255 115 16 chr3 95672577 95674402 -122362756 - L1M4c LINE L1 -4646 2000 13 270 56 0 0 chr3 95674486 95674522 -122362636 + (T)n Simple_repeat Simple_repeat 1 36 0 336 287 83 75 chr3 95674561 95674955 -122362203 - L1MEd LINE L1 -4882 1534 1105 180 0 0 0 chr3 95675222 95675242 -122361916 + (TA)n Simple_repeat Simple_repeat 2 21 0 278 372 39 0 chr3 95676185 95676314 -122360844 + MIR SINE MIR 57 190 -72 201 74 0 0 chr3 95679415 95679442 -122357716 + (T)n Simple_repeat Simple_repeat 1 27 0 29 28 0 0 chr3 95681358 95681394 -122355764 + AT_rich Low_complexity Low_complexity 1 36 0 1789 292 66 32 chr3 95683017 95683955 -122353203 - L1MC/D LINE L1 -1649 4497 3528 863 247 77 59 chr3 95684309 95684429 -122352729 - L1MC/D LINE L1 -2699 3447 3331 1202 212 35 68 chr3 95684429 95684620 -122352538 - AluJo SINE Alu -11 301 122 2364 60 10 0 chr3 95684620 95684918 -122352240 + AluY SINE Alu 1 301 -10 1202 212 35 68 chr3 95684918 95685037 -122352121 - AluJo SINE Alu -190 122 1 863 247 77 59 chr3 95685037 95685484 -122351674 - L1MC/D LINE L1 -2815 3331 2866 2348 115 20 3 chr3 95685484 95685833 -122351325 - THE1A LTR MaLR 0 355 1 863 247 77 59 chr3 95685833 95685859 -122351299 - L1MC/D LINE L1 -3280 2866 2842 2104 187 58 70 chr3 95686108 95686611 -122350547 + MLT2B2 LTR ERVL 19 515 0 24 0 0 0 chr3 95687681 95687705 -122349453 + AT_rich Low_complexity Low_complexity 1 24 0 743 139 21 28 chr3 95689115 95689259 -122347899 - L1MA9 LINE L1 -3 6309 6167 1327 338 79 55 chr3 95689883 95690737 -122346421 - L2 LINE L2 -185 3128 2296 216 97 0 0 chr3 95690737 95690768 -122346390 + (TG)n Simple_repeat Simple_repeat 2 32 0 1327 338 79 55 chr3 95690768 95691084 -122346074 - L2 LINE L2 -1017 2296 1921 2506 190 42 15 chr3 95691084 95691627 -122345531 + L1MC1 LINE L1 5767 6324 -9 1327 338 79 55 chr3 95691627 95691731 -122345427 - L2 LINE L2 -1392 1921 1821 490 266 92 0 chr3 95691734 95691941 -122345217 + L1M4 LINE L1 4067 4292 -1854 600 315 286 20 chr3 95691955 95692613 -122344545 - L2 LINE L2 -2034 1280 448 2849 208 10 31 chr3 95693090 95693706 -122343452 - MER52A LTR ERV1 0 1755 1153 947 144 35 11 chr3 95693706 95693880 -122343278 - LTR12 LTR ERV1 -67 647 470 * 1850 182 24 25 chr3 95693861 95694372 -122342786 - pTR5 LTR ERV1 -1186 1252 743 3324 190 164 36 chr3 95694372 95695376 -122341782 - MER52A LTR ERV1 -543 1212 1 24 106 0 0 chr3 95695454 95695548 -122341610 + AT_rich Low_complexity Low_complexity 1 94 0 582 286 36 1 chr3 95695748 95695781 -122341377 - MIR SINE MIR -28 180 150 1596 155 42 11 chr3 95695781 95696065 -122341093 - AluSx SINE Alu -17 295 3 582 286 36 1 chr3 95696065 95696201 -122340957 - MIR SINE MIR -58 150 7 201 204 0 20 chr3 95696499 95696548 -122340610 + A-rich Low_complexity Low_complexity 4 51 0 405 325 106 27 chr3 95696619 95696807 -122340351 + MIR SINE MIR 52 254 -8 792 176 7 0 chr3 95698073 95698221 -122338937 - L1PA15 LINE L1 0 6165 6017 21 0 0 0 chr3 95698800 95698821 -122338337 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr3 95699457 95699492 -122337666 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr3 95699691 95699728 -122337430 + AT_rich Low_complexity Low_complexity 1 37 0 360 352 68 14 chr3 95702065 95702284 -122334874 - MIR SINE MIR -11 251 21 375 374 52 18 chr3 95702590 95702919 -122334239 - L3 LINE CR1 -732 845 506 239 388 55 27 chr3 95702973 95703156 -122334002 - L3 LINE CR1 -1200 377 190 319 353 50 10 chr3 95704585 95704786 -122332372 + HAL1b LINE L1 432 640 -708 28 91 0 0 chr3 95705189 95705266 -122331892 + AT_rich Low_complexity Low_complexity 1 77 0 28 71 0 0 chr3 95705338 95705394 -122331764 + AT_rich Low_complexity Low_complexity 1 56 0 292 224 0 0 chr3 95705497 95705564 -122331594 - L1MB8 LINE L1 0 6178 6112 427 214 45 11 chr3 95705569 95705658 -122331500 + AluJ/FLAM SINE Alu 4 95 -207 30 45 0 0 chr3 95705805 95705849 -122331309 + AT_rich Low_complexity Low_complexity 1 44 0 578 315 152 13 chr3 95706204 95706664 -122330494 + L1MC4a LINE L1 5443 5966 -1842 1530 198 87 34 chr3 95707049 95707520 -122329638 - LTR54B LTR ERV1 -1 497 2 279 287 130 9 chr3 95708332 95708440 -122328718 + MIR SINE MIR 70 190 -72 928 292 75 18 chr3 95708743 95709425 -122327733 - L1MEc LINE L1 -3182 3033 2313 248 325 17 22 chr3 95709509 95709740 -122327418 - L1MEc LINE L1 -5495 901 672 229 293 0 27 chr3 95710041 95710116 -122327042 - L1MEc LINE L1 -5993 403 331 352 423 12 8 chr3 95710170 95710416 -122326742 - L1MEc LINE L1 -6140 256 10 197 306 145 31 chr3 95710417 95710610 -122326548 + L2 LINE L2 2140 2354 -960 264 222 0 0 chr3 95710957 95711029 -122326129 + (CA)n Simple_repeat Simple_repeat 1 72 0 1053 158 22 45 chr3 95711577 95711799 -122325359 - Tigger1 DNA MER2_type 0 2418 2202 769 224 6 6 chr3 95711788 95711944 -122325214 - Tigger1 DNA MER2_type -2261 157 2 * 274 285 127 48 chr3 95711949 95712114 -122325044 + MIR SINE MIR 84 261 -1 214 361 104 29 chr3 95712274 95712648 -122324510 + L2 LINE L2 1904 2305 -1009 21 82 0 0 chr3 95712891 95712940 -122324218 + AT_rich Low_complexity Low_complexity 1 49 0 181 358 150 8 chr3 95713110 95713230 -122323928 - L2 LINE L2 -195 3077 2941 22 80 0 0 chr3 95715100 95715150 -122322008 + AT_rich Low_complexity Low_complexity 1 50 0 2361 35 48 0 chr3 95716374 95716663 -122320495 - AluY SINE Alu -6 305 3 187 211 35 0 chr3 95716910 95716967 -122320191 + L2 LINE L2 1776 1834 -1480 277 345 0 18 chr3 95717233 95717346 -122319812 + (CATATA)n Simple_repeat Simple_repeat 2 112 0 368 259 37 67 chr3 95717352 95717487 -122319671 - MIR SINE MIR -120 142 12 311 286 148 30 chr3 95717565 95717869 -122319289 - L1MC/D LINE L1 -2440 5602 5263 26 30 0 0 chr3 95717974 95718007 -122319151 + AT_rich Low_complexity Low_complexity 1 33 0 245 309 66 37 chr3 95718635 95718771 -122318387 - L1MC/D LINE L1 -2513 3633 3494 424 182 0 7 chr3 95719437 95719545 -122317613 - L1MA7 LINE L1 -337 5965 5861 299 227 45 27 chr3 95719545 95719655 -122317503 + L1MA7 LINE L1 5962 6073 -218 189 107 0 0 chr3 95721770 95721798 -122315360 + (TG)n Simple_repeat Simple_repeat 2 29 0 64 35 0 0 chr3 95722436 95722521 -122314637 + AT_rich Low_complexity Low_complexity 1 85 0 25 0 0 0 chr3 95723239 95723264 -122313894 + AT_rich Low_complexity Low_complexity 1 25 0 262 303 17 90 chr3 95723870 95724048 -122313110 - MLT1H LTR MaLR -15 540 376 281 333 28 33 chr3 95724135 95724315 -122312843 - MLT1H LTR MaLR -292 257 79 200 254 0 28 chr3 95724456 95724527 -122312631 + (TA)n Simple_repeat Simple_repeat 1 69 0 242 369 59 60 chr3 95725370 95726017 -122311141 - L2 LINE L2 -455 2859 2214 298 171 49 24 chr3 95726306 95726388 -122310770 - MLT1I LTR MaLR -266 143 60 416 16 0 0 chr3 95726617 95726678 -122310480 - L1P LINE L1 -5085 1061 1001 1480 43 16 0 chr3 95726678 95726865 -122310293 + L1PA4 LINE L1 5961 6150 -5 27 49 0 0 chr3 95729702 95729743 -122307415 + AT_rich Low_complexity Low_complexity 1 41 0 1302 261 29 54 chr3 95729830 95730381 -122306777 - L1ME1 LINE L1 -102 6064 5528 573 289 67 52 chr3 95730384 95730830 -122306328 - L1ME1 LINE L1 -1284 4862 4410 458 279 74 26 chr3 95731010 95731239 -122305919 + MER46C DNA MER2_type 95 334 -4 647 229 36 0 chr3 95731395 95731535 -122305623 + MLT1B LTR MaLR 246 390 0 24 32 0 0 chr3 95731803 95731834 -122305324 + AT_rich Low_complexity Low_complexity 1 31 0 298 286 76 102 chr3 95732025 95732329 -122304829 - L2 LINE L2 -1 3312 3017 1759 225 100 22 chr3 95732598 95733060 -122304098 - MER89 LTR ERV1 -61 498 1 1982 306 124 39 chr3 95733067 95734103 -122303055 + L2 LINE L2 27 1150 -2164 187 257 324 0 chr3 95734348 95734422 -122302736 + MIR SINE MIR 59 156 -106 1445 208 28 52 chr3 95734594 95734994 -122302164 - MLT1B LTR MaLR 0 390 1 315 368 87 18 chr3 95735829 95736210 -122300948 + L2 LINE L2 1606 2012 -1302 208 329 13 0 chr3 95736533 95736609 -122300549 + L2 LINE L2 2267 2343 -971 461 288 262 34 chr3 95736690 95737105 -122300053 - L2 LINE L2 -15 3298 2790 876 337 70 30 chr3 95737105 95737633 -122299525 - L2 LINE L2 -838 2476 1928 925 264 55 90 chr3 95737724 95738355 -122298803 - L1MC5 LINE L1 -732 7229 6626 249 83 0 0 chr3 95738355 95738391 -122298767 + (TG)n Simple_repeat Simple_repeat 2 37 0 925 264 55 90 chr3 95738391 95738531 -122298627 - L1MC5 LINE L1 -1335 6626 6483 21 36 0 0 chr3 95739764 95739792 -122297366 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr3 95740234 95740268 -122296890 + AT_rich Low_complexity Low_complexity 1 34 0 26 50 0 0 chr3 95740673 95740713 -122296445 + AT_rich Low_complexity Low_complexity 1 40 0 1219 294 24 11 chr3 95740766 95741222 -122295936 - L1ME1 LINE L1 -15 6151 5690 926 184 6 0 chr3 95741662 95741830 -122295328 + FRAM SINE Alu 8 176 0 752 203 91 97 chr3 95742128 95742539 -122294619 - MLT1A1 LTR MaLR 0 374 2 490 298 57 0 chr3 95742541 95742682 -122294476 + MER5A DNA MER1_type 36 184 -5 244 344 41 16 chr3 95743799 95743921 -122293237 + MIR SINE MIR 71 195 -67 37 52 0 0 chr3 95744256 95744314 -122292844 + AT_rich Low_complexity Low_complexity 1 58 0 23 54 0 0 chr3 95744591 95744628 -122292530 + AT_rich Low_complexity Low_complexity 1 37 0 542 268 91 30 chr3 95744670 95744999 -122292159 + L1ME3 LINE L1 5680 6028 -134 22 0 0 0 chr3 95745127 95745149 -122292009 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr3 95745174 95745201 -122291957 + AT_rich Low_complexity Low_complexity 1 27 0 21 57 0 0 chr3 95745707 95745742 -122291416 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr3 95745789 95745810 -122291348 + AT_rich Low_complexity Low_complexity 1 21 0 240 223 43 0 chr3 95746078 95746172 -122290986 + (TTAA)n Simple_repeat Simple_repeat 1 98 0 317 258 45 0 chr3 95746331 95746420 -122290738 - Tigger5 DNA MER2_type 0 2323 2231 219 36 0 0 chr3 95747070 95747098 -122290060 + (TG)n Simple_repeat Simple_repeat 1 28 0 1871 135 4 0 chr3 95747104 95747378 -122289780 - AluSx SINE Alu -37 275 1 249 360 181 26 chr3 95749146 95749571 -122287587 - L2 LINE L2 -5 3308 2818 898 307 62 30 chr3 95749930 95750301 -122286857 - MLT1E LTR MaLR 0 593 211 394 248 73 0 chr3 95750428 95750537 -122286621 - MLT1E LTR MaLR -433 160 44 592 267 46 9 chr3 95750733 95750950 -122286208 - L1M4 LINE L1 -3584 3981 3757 1266 193 55 24 chr3 95750973 95751227 -122285931 + AluSx SINE Alu 1 262 -50 260 27 27 0 chr3 95751227 95751264 -122285894 + (CAAA)n Simple_repeat Simple_repeat 4 41 0 323 166 74 10 chr3 95751305 95751404 -122285754 - L1M4 LINE L1 -3935 3630 3520 8449 107 17 0 chr3 95751504 95752745 -122284413 - L1P LINE L1 -3442 2704 1443 1572 182 3 36 chr3 95753092 95753394 -122283764 + AluJb SINE Alu 3 294 -18 269 26 26 0 chr3 95753394 95753432 -122283726 + (CA)n Simple_repeat Simple_repeat 2 40 0 1910 155 7 0 chr3 95754790 95755094 -122282064 - AluSx SINE Alu -6 306 1 383 239 77 8 chr3 95755301 95755418 -122281740 - MLT1I LTR MaLR -254 155 31 931 200 10 20 chr3 95755896 95756096 -122281062 + AluJ SINE Alu 1 198 -114 477 250 17 0 chr3 95756130 95756246 -122280912 + AluJ SINE Alu 178 295 -17 33 66 0 0 chr3 95756679 95756740 -122280418 + AT_rich Low_complexity Low_complexity 1 61 0 2094 74 0 21 chr3 95758221 95758506 -122278652 + AluY SINE Alu 5 316 0 258 0 30 0 chr3 95758506 95758539 -122278619 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 22 0 0 0 chr3 95758919 95758941 -122278217 + AT_rich Low_complexity Low_complexity 1 22 0 863 161 25 0 chr3 95759234 95759396 -122277762 + FRAM SINE Alu 1 166 0 26 30 0 0 chr3 95762392 95762425 -122274733 + AT_rich Low_complexity Low_complexity 1 33 0 206 81 27 0 chr3 95762616 95762653 -122274505 + (TA)n Simple_repeat Simple_repeat 1 38 0 306 223 0 23 chr3 95763747 95763877 -122273281 + (TA)n Simple_repeat Simple_repeat 1 127 0 246 202 71 71 chr3 95766140 95766224 -122270934 + MIR SINE MIR 121 204 -58 439 306 53 15 chr3 95766655 95766861 -122270297 + L1M4 LINE L1 55 268 -6274 1494 181 54 51 chr3 95766924 95767260 -122269898 + MER1B DNA MER1_type 1 337 0 3823 254 97 65 chr3 95767369 95768194 -122268964 + L1M4 LINE L1 496 1294 -5350 1409 136 32 144 chr3 95768194 95768533 -122268625 + AluJb SINE Alu 2 302 0 3823 254 97 65 chr3 95768533 95771600 -122265558 + L1M4 LINE L1 1294 4546 -2098 1978 257 4 0 chr3 95771650 95772113 -122265045 - MLT1C LTR MaLR 0 467 3 1456 248 101 123 chr3 95772115 95773167 -122263991 - MLT1C-int LTR MaLR 0 1371 343 491 272 40 0 chr3 95773167 95773292 -122263866 - MLT1B LTR MaLR 0 467 338 5037 184 32 64 chr3 95773293 95774323 -122262835 - L1PA16 LINE L1 -4 6162 5100 235 156 0 0 chr3 95774323 95774368 -122262790 - LTR66 LTR ERVL -172 438 394 234 133 0 0 chr3 95774333 95774378 -122262780 + LTR66 LTR ERVL 395 439 -171 * 5037 184 32 64 chr3 95774368 95775292 -122261866 - L1PA16 LINE L1 -1066 5100 4245 1031 236 30 12 chr3 95775296 95775588 -122261570 - MLT1B LTR MaLR -118 349 1 323 293 142 27 chr3 95775652 95775877 -122261281 + MIR SINE MIR 10 260 -2 579 188 0 0 chr3 95776417 95776518 -122260640 + MLT1A1 LTR MaLR 265 365 0 180 0 0 0 chr3 95777058 95777078 -122260080 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 26 0 0 0 chr3 95777994 95778020 -122259138 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr3 95778054 95778082 -122259076 + AT_rich Low_complexity Low_complexity 1 28 0 2388 97 14 30 chr3 95778666 95779027 -122258131 - THE1A LTR MaLR 0 355 1 2151 124 3 0 chr3 95779324 95779630 -122257528 - AluSp SINE Alu 0 313 7 1026 88 7 0 chr3 95779633 95779770 -122257388 - AluSp SINE Alu -175 138 1 21 0 0 0 chr3 95780360 95780381 -122256777 + AT_rich Low_complexity Low_complexity 1 21 0 892 219 64 12 chr3 95781175 95781495 -122255663 + MSTD LTR MaLR 31 396 0 335 306 90 54 chr3 95782748 95782782 -122254376 + L1MEd LINE L1 757 788 -5341 1448 231 46 3 chr3 95782782 95783132 -122254026 + MLT1A1 LTR MaLR 1 365 0 335 306 90 54 chr3 95783132 95783898 -122253260 + L1MEd LINE L1 788 1591 -4538 28 0 0 0 chr3 95783982 95784010 -122253148 + AT_rich Low_complexity Low_complexity 1 28 0 405 254 49 101 chr3 95784260 95784567 -122252591 - MER57A LTR ERV1 -3 400 110 2109 140 8 11 chr3 95784567 95784923 -122252235 - THE1A LTR MaLR 0 355 1 10670 110 27 0 chr3 95784923 95786462 -122250696 - THE1A-int LTR MaLR 0 1580 1 1518 113 9 0 chr3 95786462 95786675 -122250483 - THE1A LTR MaLR 0 355 141 1834 162 9 0 chr3 95786679 95786994 -122250164 - L1MA4 LINE L1 -425 5875 5558 * 5147 189 16 30 chr3 95786986 95788369 -122248789 - L1MA4 LINE L1 -697 5607 4242 1229 153 113 99 chr3 95788374 95788747 -122248411 - L1M2 LINE L1 -525 5775 5398 731 236 20 30 chr3 95789611 95789728 -122247430 - MER31-int LTR ERV1 -1379 6158 6042 1297 258 42 28 chr3 95789728 95790088 -122247070 - MLT1A1 LTR MaLR 0 365 1 731 236 20 30 chr3 95790088 95790173 -122246985 - MER31-int LTR ERV1 -1495 6042 5958 456 288 14 27 chr3 95790200 95790346 -122246812 - MER31-int LTR ERV1 -1569 5968 5825 2816 235 52 69 chr3 95790501 95792406 -122244752 - MER31-int LTR ERV1 -1495 4184 2036 22 0 0 0 chr3 95792409 95792431 -122244727 + AT_rich Low_complexity Low_complexity 1 22 0 522 168 42 0 chr3 95792482 95792577 -122244581 - MER4A LTR ERV1 -565 99 1 1594 148 3 82 chr3 95792671 95792989 -122244169 + MER4A LTR ERV1 372 664 0 1192 113 137 0 chr3 95792992 95793196 -122243962 + MER4A-int LTR ERV1 1 232 -6366 9339 75 3 7 chr3 95793310 95794602 -122242556 - L1PA4 LINE L1 -2346 3800 2514 * 12031 66 2 0 chr3 95794601 95796846 -122240312 + L1PA4 LINE L1 3814 6061 -94 2870 74 36 0 chr3 95796957 95797348 -122239810 + L1PA6 LINE L1 5743 6147 -7 23 33 0 0 chr3 95797406 95797436 -122239722 + AT_rich Low_complexity Low_complexity 1 30 0 1999 155 0 0 chr3 95797522 95797813 -122239345 - AluSx SINE Alu -21 291 1 257 308 32 26 chr3 95797813 95797959 -122239199 - MER31-int LTR ERV1 -6430 1690 1541 8078 217 33 15 chr3 95798081 95798387 -122238771 - L1PB4 LINE L1 -32 6124 5825 2224 87 7 3 chr3 95798387 95798685 -122238473 - AluY SINE Alu -12 299 1 8078 217 33 15 chr3 95798685 95799362 -122237796 - L1PB4 LINE L1 -331 5825 5161 2242 98 3 0 chr3 95799362 95799658 -122237500 - AluSg SINE Alu -13 297 1 8078 217 33 15 chr3 95799658 95801609 -122235549 - L1PB4 LINE L1 -995 5161 3140 1721 251 68 59 chr3 95801603 95802371 -122234787 + L1ME1 LINE L1 5388 6162 -4 * 24 0 0 0 chr3 95802410 95802434 -122234724 + AT_rich Low_complexity Low_complexity 1 24 0 226 203 38 38 chr3 95802501 95802580 -122234578 + L1P LINE L1 2141 2219 -3927 402 256 175 14 chr3 95802702 95803057 -122234101 + L1ME LINE L1 2675 3086 -3060 479 312 87 46 chr3 95803574 95804010 -122233148 + L1ME LINE L1 4758 5211 -935 3331 178 46 39 chr3 95804010 95804748 -122232410 + L1MC1 LINE L1 5591 6333 0 574 323 49 20 chr3 95804811 95805252 -122231906 + L1ME LINE L1 5265 5719 -451 214 167 0 0 chr3 95805324 95805360 -122231798 + (CA)n Simple_repeat Simple_repeat 1 36 0 412 239 110 9 chr3 95805904 95806013 -122231145 - MER44D DNA MER2_type -1 608 489 716 110 100 232 chr3 95806026 95806345 -122230813 - MER44D DNA MER2_type -59 550 4 26 30 0 0 chr3 95806493 95806526 -122230632 + AT_rich Low_complexity Low_complexity 1 33 0 25 65 0 0 chr3 95806693 95806739 -122230419 + AT_rich Low_complexity Low_complexity 1 46 0 2215 96 3 3 chr3 95806749 95807040 -122230118 + AluSx SINE Alu 3 293 -19 207 302 191 0 chr3 95807436 95807562 -122229596 - MIR SINE MIR -13 249 100 2452 169 118 25 chr3 95807576 95808085 -122229073 - MER21A LTR ERV1 0 931 376 816 198 39 28 chr3 95808090 95808272 -122228886 - MER21A LTR ERV1 -667 264 81 408 325 0 8 chr3 95808276 95808399 -122228759 - HERV16 LTR ERVL -3205 1791 1670 367 403 50 5 chr3 95808420 95808621 -122228537 - HERV16 LTR ERVL -3427 1569 1360 1720 204 15 121 chr3 95808772 95808844 -122228314 + MLT1C LTR MaLR 9 87 -380 2327 61 0 3 chr3 95808844 95809137 -122228021 + AluY SINE Alu 1 292 -19 1720 204 15 121 chr3 95809137 95809556 -122227602 + MLT1C LTR MaLR 87 465 -2 430 351 45 0 chr3 95809558 95809760 -122227398 - HERV16 LTR ERVL -3787 1209 999 3855 47 6 0 chr3 95810596 95811068 -122226090 - L1PA5 LINE L1 -275 5879 5405 516 289 35 0 chr3 95811176 95811318 -122225840 - LTR16A LTR ERVL 0 450 304 4425 117 14 35 chr3 95812447 95812808 -122224350 + L1PB1 LINE L1 5419 5757 -394 437 96 0 14 chr3 95812808 95812881 -122224277 + (TA)n Simple_repeat Simple_repeat 2 73 0 4425 117 14 35 chr3 95812881 95813260 -122223898 + L1PB1 LINE L1 5757 6143 -8 964 236 64 70 chr3 95813282 95813465 -122223693 - L1MEc LINE L1 -3698 2521 2338 389 158 0 0 chr3 95813465 95813541 -122223617 - L1MA7 LINE L1 0 6291 6216 964 236 64 70 chr3 95813541 95813812 -122223346 - L1MEc LINE L1 -3881 2338 2109 1405 257 39 16 chr3 95813812 95814197 -122222961 + MSTD LTR MaLR 3 396 0 964 236 64 70 chr3 95814197 95814372 -122222786 - L1MEc LINE L1 -4110 2109 1934 1449 255 56 76 chr3 95814414 95814811 -122222347 - L1ME1 LINE L1 -4 6957 6581 2447 61 0 0 chr3 95814811 95815121 -122222037 + AluY SINE Alu 1 310 -1 1449 255 56 76 chr3 95815121 95815487 -122221671 - L1ME1 LINE L1 -380 6581 6209 24 0 0 0 chr3 95815535 95815559 -122221599 + AT_rich Low_complexity Low_complexity 1 24 0 1167 173 37 0 chr3 95815559 95815773 -122221385 - L1PA16 LINE L1 -9 6157 5936 1515 250 24 52 chr3 95815776 95816415 -122220743 - L1ME1 LINE L1 -1287 5654 5034 414 0 0 0 chr3 95816440 95816486 -122220672 + (TATG)n Simple_repeat Simple_repeat 2 47 0 1966 61 3 34 chr3 95816486 95816780 -122220378 - AluY SINE Alu -26 285 1 2378 210 27 59 chr3 95816780 95817665 -122219493 + MER54A LTR ERVL 1 644 0 675 266 16 64 chr3 95817687 95817999 -122219159 - L1ME1 LINE L1 -1947 4994 4698 888 244 44 4 chr3 95818029 95818304 -122218854 - L1ME1 LINE L1 -3195 3746 3461 777 147 33 20 chr3 95818304 95818454 -122218704 + MER4E LTR ERV1 1 152 -627 1638 157 11 3 chr3 95818558 95818844 -122218314 + MER4E LTR ERV1 464 751 -15 369 285 32 98 chr3 95818878 95819124 -122218034 - L1ME1 LINE L1 -5321 1620 1391 544 304 70 79 chr3 95819169 95819538 -122217620 - L1ME1 LINE L1 -5403 1020 655 709 278 117 28 chr3 95819686 95820046 -122217112 - L1ME1 LINE L1 -6000 423 32 266 284 27 7 chr3 95820069 95820217 -122216941 - L1MEc LINE L1 -4935 1461 1311 1133 239 15 15 chr3 95820777 95821040 -122216118 + AluJo SINE Alu 36 298 -14 22 35 0 0 chr3 95821087 95821116 -122216042 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr3 95822979 95823008 -122214150 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr3 95823170 95823199 -122213959 + AT_rich Low_complexity Low_complexity 1 29 0 214 365 26 52 chr3 95824083 95824275 -122212883 - L2 LINE L2 -696 2618 2432 306 223 0 23 chr3 95824461 95824591 -122212567 + (TA)n Simple_repeat Simple_repeat 1 127 0 492 274 68 26 chr3 95825822 95826623 -122210535 - L1M4 LINE L1 -2125 5440 4574 551 254 122 10 chr3 95826658 95826953 -122210205 - L1M4 LINE L1 -3174 4391 4064 247 327 164 6 chr3 95827775 95827934 -122209224 + MIR3 SINE MIR 25 208 0 7835 191 34 10 chr3 95828432 95830557 -122206601 - L1M4 LINE L1 -4707 2858 11 246 288 136 8 chr3 95830869 95830994 -122206164 + MIR SINE MIR 121 261 -1 25 0 0 0 chr3 95831017 95831042 -122206116 + AT_rich Low_complexity Low_complexity 1 25 0 1365 159 8 71 chr3 95831909 95832185 -122204973 + AluSx SINE Alu 54 313 0 22 35 0 0 chr3 95832236 95832265 -122204893 + AT_rich Low_complexity Low_complexity 1 29 0 27 73 0 0 chr3 95832289 95832344 -122204814 + AT_rich Low_complexity Low_complexity 1 55 0 4717 63 45 12 chr3 95832522 95832815 -122204343 + L1PA8 LINE L1 5490 5772 -401 2438 60 7 0 chr3 95832815 95833114 -122204044 + AluY SINE Alu 2 302 -9 4717 63 45 12 chr3 95833114 95833483 -122203675 + L1PA8 LINE L1 5772 6173 0 24 32 0 0 chr3 95833568 95833599 -122203559 + AT_rich Low_complexity Low_complexity 1 31 0 2590 40 0 0 chr3 95833600 95833903 -122203255 + AluY SINE Alu 1 303 -8 216 121 69 17 chr3 95834364 95834422 -122202736 + GA-rich Low_complexity Low_complexity 4 64 0 22 0 0 0 chr3 95834499 95834521 -122202637 + AT_rich Low_complexity Low_complexity 1 22 0 600 268 79 61 chr3 95835377 95835705 -122201453 - LTR40b LTR ERVL -2 460 127 336 24 0 0 chr3 95835898 95835939 -122201219 + (CA)n Simple_repeat Simple_repeat 2 42 0 1631 188 14 3 chr3 95836511 95836799 -122200359 + AluJb SINE Alu 1 291 -21 23 0 0 0 chr3 95836799 95836822 -122200336 + AT_rich Low_complexity Low_complexity 1 23 0 211 356 19 48 chr3 95837275 95837379 -122199779 - L3 LINE CR1 -57 1520 1420 2478 63 0 0 chr3 95837939 95838242 -122198916 + AluY SINE Alu 2 304 -7 284 333 17 22 chr3 95839500 95839680 -122197478 + L1MEc LINE L1 464 642 -6183 705 285 94 34 chr3 95840272 95841126 -122196032 + L1MEc LINE L1 1060 1974 -4670 222 336 35 9 chr3 95841195 95841311 -122195847 + L2 LINE L2 2662 2780 -534 367 200 12 0 chr3 95841510 95841590 -122195568 - MLT1I LTR MaLR 0 409 329 21 36 0 0 chr3 95841732 95841760 -122195398 + AT_rich Low_complexity Low_complexity 1 28 0 313 48 0 0 chr3 95842976 95843018 -122194140 + MADE1 DNA Mariner 35 76 -4 1558 205 3 0 chr3 95843324 95843607 -122193551 + AluJo SINE Alu 11 294 -18 21 0 0 0 chr3 95843625 95843646 -122193512 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr3 95843887 95843925 -122193233 + AT_rich Low_complexity Low_complexity 1 38 0 1800 172 3 3 chr3 95844612 95844915 -122192243 - AluSx SINE Alu -7 305 3 340 57 19 0 chr3 95845084 95845137 -122192021 + L1MA9 LINE L1 6259 6312 0 897 294 123 77 chr3 95845193 95845805 -122191353 + MER115 DNA AcHobo 44 683 -10 258 32 0 0 chr3 95845856 95845887 -122191271 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 7312 41 0 5 chr3 95845919 95847095 -122190063 - L1PA5 LINE L1 -1 6153 4980 5821 53 0 0 chr3 95847095 95847833 -122189325 + L1PA5 LINE L1 4245 4982 -1164 22 35 0 0 chr3 95848932 95848961 -122188197 + AT_rich Low_complexity Low_complexity 1 29 0 270 0 0 0 chr3 95849300 95849330 -122187828 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1793 191 71 54 chr3 95849779 95850317 -122186841 - MER57-int LTR ERV1 -1674 4657 4111 2262 184 2 35 chr3 95850317 95850768 -122186390 - MER50 LTR ERV1 -18 716 281 * 2288 176 13 0 chr3 95850767 95851160 -122185998 - MER57A LTR ERV1 -5 398 1 1486 174 34 0 chr3 95851162 95851427 -122185731 - MER50 LTR ERV1 -447 287 14 3269 211 92 128 chr3 95851429 95851531 -122185627 - MER57-int LTR ERV1 -2216 4115 4011 1501 144 169 28 chr3 95851531 95851850 -122185308 + THE1B LTR MaLR 1 364 0 10738 117 20 1 chr3 95851850 95853401 -122183757 + THE1B-int LTR MaLR 1 1580 0 1998 139 33 28 chr3 95853403 95853763 -122183395 + THE1B LTR MaLR 3 364 0 3269 211 92 128 chr3 95853763 95855573 -122181585 - MER57-int LTR ERV1 -2320 4011 2332 1305 293 31 14 chr3 95855699 95856057 -122181101 - MER57-int LTR ERV1 -4057 2274 1911 275 200 0 46 chr3 95856147 95856212 -122180946 - MER57-int LTR ERV1 -4472 1859 1798 425 170 72 85 chr3 95856218 95856371 -122180787 - MER57-int LTR ERV1 -4062 2201 2051 315 71 0 0 chr3 95856525 95856567 -122180591 + (A)n Simple_repeat Simple_repeat 1 42 0 352 314 73 15 chr3 95856889 95857026 -122180132 - MER57-int LTR ERV1 -5098 1233 1089 337 136 0 76 chr3 95857138 95857204 -122179954 - MER57-int LTR ERV1 -5429 902 842 363 243 40 53 chr3 95857254 95857406 -122179752 - MER57-int LTR ERV1 -5705 1832 1683 2208 221 171 12 chr3 95857495 95858174 -122178984 - LTR48 LTR ERV1 0 787 1 34 0 0 0 chr3 95858552 95858586 -122178572 + AT_rich Low_complexity Low_complexity 1 34 0 1320 175 95 22 chr3 95859361 95859635 -122177523 + AluJo SINE Alu 3 296 -6 647 192 32 0 chr3 95859784 95859909 -122177249 + MLT1A1 LTR MaLR 13 141 -224 2354 123 69 28 chr3 95859911 95860343 -122176815 - LTR7 LTR ERV1 0 450 1 2667 138 22 23 chr3 95860343 95861008 -122176150 - HERVH LTR ERV1 0 7713 3953 2162 134 44 3 chr3 95861000 95861365 -122175793 - HERVH LTR ERV1 -3977 3736 3357 * 12068 113 28 28 chr3 95861365 95863336 -122173822 - HERVH LTR ERV1 -4883 2830 859 2898 158 35 6 chr3 95863368 95863854 -122173304 - THE1-int LTR MaLR -654 926 427 1960 260 90 42 chr3 95864011 95864544 -122172614 + L1MC4 LINE L1 4797 4653 -1493 2100 120 3 13 chr3 95864544 95864845 -122172313 + AluSp SINE Alu 1 298 -15 1960 260 90 42 chr3 95864845 95865635 -122171523 + L1MC4 LINE L1 4652 5403 -743 276 336 0 10 chr3 95865804 95865908 -122171250 + MLT1I LTR MaLR 88 190 -219 245 313 0 0 chr3 95866073 95866137 -122171021 + MLT1I LTR MaLR 346 409 0 1855 180 31 67 chr3 95866497 95866947 -122170211 + Tigger2a DNA MER2_type 1 434 0 3529 113 2 6 chr3 95867166 95867679 -122169479 + MER9 LTR ERVK 1 511 0 23 33 0 0 chr3 95867686 95867716 -122169442 + AT_rich Low_complexity Low_complexity 1 30 0 552 223 0 0 chr3 95867768 95867880 -122169278 + Tigger5 DNA MER2_type 4 115 -2208 * 1164 155 50 0 chr3 95867877 95868077 -122169081 + Tigger5 DNA MER2_type 2114 2323 0 1272 228 37 69 chr3 95868603 95868981 -122168177 - MLT1A2 LTR MaLR -5 369 4 1956 143 10 0 chr3 95869074 95869382 -122167776 - AluSx SINE Alu -1 311 1 21 36 0 0 chr3 95869970 95869998 -122167160 + AT_rich Low_complexity Low_complexity 1 28 0 2013 112 0 17 chr3 95870118 95870413 -122166745 + AluSq SINE Alu 1 290 -23 189 0 0 0 chr3 95870416 95870437 -122166721 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 606 281 52 54 chr3 95870717 95871170 -122165988 + MLT1C LTR MaLR 27 451 -16 25 51 0 0 chr3 95871816 95871855 -122165303 + AT_rich Low_complexity Low_complexity 1 39 0 6944 233 55 23 chr3 95872023 95872533 -122164625 + L1MC1 LINE L1 11 503 -6110 189 0 0 0 chr3 95872533 95872554 -122164604 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 6944 233 55 23 chr3 95872554 95874204 -122162954 + L1MC1 LINE L1 503 2099 -4514 2298 116 0 0 chr3 95874204 95874515 -122162643 + AluSx SINE Alu 1 311 -1 6944 233 55 23 chr3 95874515 95878624 -122158534 + L1MC1 LINE L1 2099 6602 -11 28 102 0 0 chr3 95879028 95879126 -122158032 + AT_rich Low_complexity Low_complexity 1 98 0 2090 142 7 0 chr3 95879195 95879505 -122157653 + AluSx SINE Alu 1 312 0 1721 191 0 3 chr3 95879737 95880036 -122157122 - AluJb SINE Alu -14 298 1 1902 183 40 0 chr3 95882142 95882492 -122154666 - THE1B LTR MaLR 0 364 1 8930 143 60 5 chr3 95882497 95883990 -122153168 - THE1B-int LTR MaLR -5 1575 2 2097 160 22 3 chr3 95883991 95884348 -122152810 - THE1B LTR MaLR 0 364 1 25 31 0 0 chr3 95884353 95884385 -122152773 + AT_rich Low_complexity Low_complexity 1 32 0 2380 163 32 91 chr3 95884810 95885394 -122151764 - MER34 LTR ERV1 -5 537 1 1763 176 0 0 chr3 95885578 95885867 -122151291 - AluJb SINE Alu -22 290 2 28 0 0 0 chr3 95888721 95888749 -122148409 + AT_rich Low_complexity Low_complexity 1 28 0 265 224 153 12 chr3 95889510 95889595 -122147563 - MER34 LTR ERV1 -2 540 444 1918 204 120 16 chr3 95889831 95890055 -122147103 + MLT2B3 LTR ERVL 1 200 -354 2374 112 39 3 chr3 95890055 95890413 -122146745 + THE1C LTR MaLR 3 373 -2 1918 204 120 16 chr3 95890413 95890639 -122146519 + MLT2B3 LTR ERVL 200 498 -56 205 222 19 0 chr3 95890639 95890693 -122146465 + (TA)n Simple_repeat Simple_repeat 2 56 0 234 0 0 0 chr3 95891054 95891080 -122146078 + (TG)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr3 95891490 95891512 -122145646 + AT_rich Low_complexity Low_complexity 1 22 0 250 109 55 0 chr3 95893319 95893374 -122143784 + (CATA)n Simple_repeat Simple_repeat 3 60 0 21 36 0 0 chr3 95893722 95893750 -122143408 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr3 95895156 95895185 -122141973 + AT_rich Low_complexity Low_complexity 1 29 0 289 330 47 42 chr3 95895228 95895443 -122141715 + MIR SINE MIR 3 218 -44 22 70 0 0 chr3 95895485 95895528 -122141630 + AT_rich Low_complexity Low_complexity 1 43 0 1055 269 11 73 chr3 95895705 95896073 -122141085 + MLT1E1 LTR MaLR 310 654 0 303 382 51 13 chr3 95896521 95896678 -122140480 - MIR3 SINE MIR -36 172 10 3644 300 45 28 chr3 95898301 95899870 -122137288 + L1PBa LINE L1 3 1597 -5266 1365 170 8 21 chr3 95899856 95900097 -122137061 + L1P5 LINE L1 28 265 -5939 * 10098 220 79 19 chr3 95900098 95900439 -122136719 + L1P5 LINE L1 322 641 -5570 264 77 0 0 chr3 95900439 95900478 -122136680 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 10098 220 79 19 chr3 95900478 95904921 -122132237 + L1P5 LINE L1 641 5645 -566 1564 175 58 0 chr3 95904921 95905076 -122132082 - AluJb SINE Alu -22 290 111 189 74 0 0 chr3 95905076 95905103 -122132055 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1564 175 58 0 chr3 95905103 95905221 -122131937 - AluJb SINE Alu -201 111 1 10098 220 79 19 chr3 95905221 95905299 -122131859 + L1P5 LINE L1 5645 5717 -494 32 26 0 0 chr3 95905919 95905958 -122131200 + AT_rich Low_complexity Low_complexity 1 39 0 600 203 63 0 chr3 95906050 95906193 -122130965 + L1MA9 LINE L1 6160 6311 -1 2882 30 0 0 chr3 95906220 95906553 -122130605 - L1PA4 LINE L1 -385 5769 5437 1830 30 4 13 chr3 95906551 95906785 -122130373 + L1PA4 LINE L1 5755 5986 -169 * 192 152 0 0 chr3 95907198 95907231 -122129927 + (TG)n Simple_repeat Simple_repeat 2 34 0 348 204 20 51 chr3 95907249 95907347 -122129811 - L1MC4 LINE L1 -1339 6703 6609 28 0 0 0 chr3 95909054 95909082 -122128076 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr3 95909281 95909311 -122127847 + AT_rich Low_complexity Low_complexity 1 30 0 5042 134 65 134 chr3 95909589 95910958 -122126200 + MER52C LTR ERV1 1 1274 -4 374 343 64 18 chr3 95911037 95911317 -122125841 - LTR16A LTR ERVL -31 419 127 1129 256 35 87 chr3 95911320 95911804 -122125354 + LTR40b LTR ERVL 4 462 0 700 170 20 8 chr3 95911955 95912096 -122125062 - MSTA LTR MaLR -215 149 1 2089 121 0 7 chr3 95912366 95912672 -122124486 + AluY SINE Alu 6 309 -2 722 235 133 50 chr3 95912918 95913297 -122123861 + MLT2B1 LTR ERVL 1 456 -64 22 70 0 0 chr3 95913358 95913401 -122123757 + AT_rich Low_complexity Low_complexity 1 43 0 186 133 0 0 chr3 95913431 95913461 -122123697 + (TG)n Simple_repeat Simple_repeat 1 30 0 238 167 0 74 chr3 95913461 95913514 -122123644 + MLT2B1 LTR ERVL 464 512 -8 6251 136 31 2 chr3 95913514 95914518 -122122640 - Tigger1 DNA MER2_type 0 2418 1386 1508 188 44 62 chr3 95914518 95914841 -122122317 + LTR56 LTR ERV1 1 315 -130 1200 249 34 0 chr3 95914841 95915134 -122122024 - AluJb SINE Alu -9 303 1 1508 188 44 62 chr3 95915134 95915263 -122121895 + LTR56 LTR ERV1 315 445 0 7412 147 26 51 chr3 95915282 95916702 -122120456 - Tigger1 DNA MER2_type -1027 1391 7 21 0 0 0 chr3 95917498 95917519 -122119639 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 95918726 95918749 -122118409 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr3 95919413 95919446 -122117712 + AT_rich Low_complexity Low_complexity 1 33 0 337 246 0 0 chr3 95919585 95919654 -122117504 + MER34 LTR ERV1 2 70 -472 380 312 65 52 chr3 95920655 95920886 -122116272 - MIR SINE MIR -21 241 8 21 0 0 0 chr3 95922479 95922500 -122114658 + AT_rich Low_complexity Low_complexity 1 21 0 37 52 0 0 chr3 95922581 95922639 -122114519 + AT_rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr3 95923032 95923053 -122114105 + AT_rich Low_complexity Low_complexity 1 21 0 212 253 170 35 chr3 95923079 95923188 -122113970 - MER5A DNA MER1_type -28 160 31 202 224 0 45 chr3 95923269 95923336 -122113822 + (TTTA)n Simple_repeat Simple_repeat 1 64 0 1166 221 34 87 chr3 95923341 95923753 -122113405 + MLT1B LTR MaLR 1 390 0 22 0 0 0 chr3 95923781 95923803 -122113355 + AT_rich Low_complexity Low_complexity 1 22 0 207 139 0 0 chr3 95923886 95923922 -122113236 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 749 338 57 52 chr3 95923923 95924503 -122112655 - MLT2E LTR ERVL 0 628 46 180 0 0 0 chr3 95924503 95924523 -122112635 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 489 32 0 0 chr3 95924528 95924590 -122112568 - L1PA4 LINE L1 -3 6152 6091 3077 34 22 8 chr3 95924590 95925201 -122111957 + L1P2 LINE L1 5014 5633 -522 267 287 23 11 chr3 95926019 95926106 -122111052 + MLT1F1 LTR MaLR 35 122 -445 2108 218 35 13 chr3 95926138 95926688 -122110470 + L1MC3 LINE L1 7212 7773 -12 720 255 16 16 chr3 95927308 95927496 -122109662 + MER5A DNA MER1_type 1 188 -1 2349 63 3 3 chr3 95927519 95927821 -122109337 - AluY SINE Alu -9 302 1 204 293 0 0 chr3 95928185 95928243 -122108915 - MIR SINE MIR -109 153 96 1079 238 54 78 chr3 95928813 95929367 -122107791 - MER34 LTR ERV1 -1 541 1 2048 188 68 15 chr3 95930876 95931276 -122105882 - MSTB LTR MaLR -3 423 3 923 238 30 47 chr3 95933562 95933861 -122103297 + AluJo SINE Alu 17 310 -2 715 98 21 21 chr3 95933876 95934019 -122103139 + (GGAGA)n Simple_repeat Simple_repeat 2 144 0 1432 109 142 25 chr3 95935237 95935511 -122101647 + AluSx SINE Alu 1 306 -6 238 270 0 105 chr3 95935594 95935746 -122101412 + A-rich Low_complexity Low_complexity 4 139 0 234 0 0 0 chr3 95935784 95935810 -122101348 + (TTTTTA)n Simple_repeat Simple_repeat 3 28 0 2249 176 57 28 chr3 95936771 95937301 -122099857 - L1 LINE L1 -1607 4539 3995 262 164 182 0 chr3 95937306 95937361 -122099797 - AluJb SINE Alu -2 300 236 1040 191 0 0 chr3 95937361 95937539 -122099619 - AluJb SINE Alu -134 178 1 1980 211 40 15 chr3 95937539 95937993 -122099165 - L1 LINE L1 -2135 4011 3547 249 203 189 0 chr3 95938579 95938653 -122098505 - L2 LINE L2 -1 3312 3225 1783 206 66 5 chr3 95938863 95939256 -122097902 - MSTA LTR MaLR -1 427 11 182 350 0 0 chr3 95939970 95940030 -122097128 - L2 LINE L2 -92 3221 3162 314 386 15 0 chr3 95941158 95941290 -122095868 + CT-rich Low_complexity Low_complexity 1 134 0 21 36 0 0 chr3 95941516 95941544 -122095614 + AT_rich Low_complexity Low_complexity 1 28 0 2219 209 62 2 chr3 95941619 95942102 -122095056 - L1MA4 LINE L1 -41 6259 5748 196 36 73 55 chr3 95943480 95943535 -122093623 + (GGGTG)n Simple_repeat Simple_repeat 3 58 0 23 108 0 0 chr3 95944098 95944191 -122092967 + AT_rich Low_complexity Low_complexity 1 93 0 659 154 23 15 chr3 95944766 95944896 -122092262 - L1PB4 LINE L1 0 6156 6026 1193 214 8 16 chr3 95944902 95945150 -122092008 - AluJo SINE Alu -24 288 43 3666 175 15 64 chr3 95945159 95946119 -122091039 - L1PB4 LINE L1 -127 6029 5024 1479 194 17 20 chr3 95946119 95946412 -122090746 - AluJo SINE Alu -20 292 1 3666 175 15 64 chr3 95946412 95946458 -122090700 - L1PB4 LINE L1 -1132 5024 5082 1193 152 60 5 chr3 95946458 95946675 -122090483 + MER30 DNA MER1_type 2 230 0 3666 175 15 64 chr3 95946675 95946716 -122090442 - L1PB4 LINE L1 -1073 5083 5042 254 238 20 20 chr3 95946721 95946822 -122090336 - L1HS LINE L1 -3 6152 6052 202 200 0 83 chr3 95946839 95946899 -122090259 + C-rich Low_complexity Low_complexity 6 60 0 4974 174 43 34 chr3 95946999 95948602 -122088556 + L1MA6 LINE L1 4687 6300 0 733 299 169 11 chr3 95949201 95949549 -122087609 - L2 LINE L2 -802 2512 2110 24 24 0 24 chr3 95950476 95950493 -122086665 + AT_rich Low_complexity Low_complexity 1 17 -24 2181 71 0 44 chr3 95950493 95950789 -122086369 + AluY SINE Alu 1 283 -28 24 24 0 24 chr3 95950789 95950813 -122086345 + AT_rich Low_complexity Low_complexity 17 41 0 4053 137 32 6 chr3 95951152 95951815 -122085343 + MER50 LTR ERV1 32 711 -23 803 204 30 21 chr3 95951831 95952127 -122085031 + MLT1A1 LTR MaLR 6 365 0 865 286 72 10 chr3 95952172 95952588 -122084570 - MER20B DNA MER1_type -24 759 318 256 216 14 54 chr3 95952733 95952807 -122084351 - MER20B DNA MER1_type -653 130 60 254 286 30 53 chr3 95955854 95955987 -122081171 - MARNA DNA Mariner -247 339 210 1163 62 25 12 chr3 95956302 95956462 -122080696 - L1PA4 LINE L1 -4 6151 5990 24 67 0 0 chr3 95956519 95956564 -122080594 + AT_rich Low_complexity Low_complexity 1 45 0 209 275 43 14 chr3 95956958 95957027 -122080131 + MER5C DNA MER1_type 6 76 -248 265 276 23 17 chr3 95957038 95957211 -122079947 + L1ME LINE L1 5349 5599 -567 497 190 68 143 chr3 95957344 95957466 -122079692 - L1M4 LINE L1 -1999 4147 4056 293 47 23 0 chr3 95957466 95957509 -122079649 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 497 190 68 143 chr3 95957509 95957665 -122079493 - L1M4 LINE L1 -2090 4056 3890 1044 241 4 13 chr3 95957760 95957992 -122079166 - MLT1A1 LTR MaLR -5 360 131 1803 215 14 3 chr3 95958001 95958350 -122078808 + MLT1A1 LTR MaLR 13 365 0 392 177 13 25 chr3 95958394 95958473 -122078685 - MLT1A1 LTR MaLR -287 78 1 836 236 72 8 chr3 95958493 95958730 -122078428 - L1ME LINE L1 -431 5735 5484 6778 49 2 4 chr3 95958906 95960388 -122076770 - L1PA4 LINE L1 -41 6114 4636 1563 162 9 164 chr3 95960387 95960912 -122076246 - L1 LINE L1 -1122 5024 4581 * 2433 213 16 4 chr3 95960910 95961460 -122075698 + L1 LINE L1 4008 4564 -1582 29 28 0 0 chr3 95962094 95962130 -122075028 + AT_rich Low_complexity Low_complexity 1 36 0 25 75 0 0 chr3 95962303 95962356 -122074802 + AT_rich Low_complexity Low_complexity 1 53 0 382 315 28 6 chr3 95962383 95962561 -122074597 - L1ME LINE L1 -439 5682 5501 1590 203 44 19 chr3 95963686 95964051 -122073107 + THE1C LTR MaLR 1 374 -1 400 316 62 62 chr3 95964386 95964677 -122072481 + MER110-int LTR ERV1 2503 2793 -1854 21 82 0 0 chr3 95965219 95965268 -122071890 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr3 95965447 95965475 -122071683 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr3 95965697 95965725 -122071433 + AT_rich Low_complexity Low_complexity 1 28 0 201 176 0 0 chr3 95967161 95967195 -122069963 + T-rich Low_complexity Low_complexity 1 34 0 772 295 42 23 chr3 95967234 95967658 -122069500 - MLT1E LTR MaLR -1 592 67 25 31 0 0 chr3 95968010 95968042 -122069116 + AT_rich Low_complexity Low_complexity 1 32 0 254 355 0 11 chr3 95968087 95968180 -122068978 + L2 LINE L2 3219 3310 -3 759 316 82 19 chr3 95969153 95969469 -122067689 - LTR16A LTR ERVL -106 344 9 2105 128 72 6 chr3 95969474 95969809 -122067349 - LTR18A LTR ERVL 0 357 1 23280 189 16 13 chr3 95969810 95973962 -122063196 - HERVL18 LTR ERVL 0 6047 1886 188 33 0 33 chr3 95973969 95973999 -122063159 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 315 0 0 0 chr3 95974124 95974159 -122062999 + (TG)n Simple_repeat Simple_repeat 2 36 0 1717 211 22 3 chr3 95974341 95974711 -122062447 + L1 LINE L1 3844 4220 -1926 2918 237 25 2 chr3 95974975 95975582 -122061576 + L1MA5A LINE L1 65 685 -6104 4615 189 26 49 chr3 95975704 95977774 -122059384 + L1MA5A LINE L1 4914 6934 -5 6781 251 47 9 chr3 95977781 95980704 -122056454 + L1MA5 LINE L1 2206 5293 -853 247 296 0 0 chr3 95980682 95980780 -122056378 + L1MC4 LINE L1 6595 6692 -1350 * 3486 174 154 14 chr3 95980804 95981650 -122055508 + L1MA5 LINE L1 5332 6295 -5 21 0 0 0 chr3 95982177 95982198 -122054960 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr3 95983238 95983280 -122053878 + AT_rich Low_complexity Low_complexity 1 42 0 511 260 118 30 chr3 95983543 95983712 -122053446 + MIR SINE MIR 24 207 -55 223 352 6 69 chr3 95984203 95984362 -122052796 - MIR SINE MIR -74 188 40 240 369 32 6 chr3 95984394 95984551 -122052607 - L2 LINE L2 -561 2753 2593 1600 175 59 37 chr3 95985142 95985496 -122051662 + MLT1C LTR MaLR 1 362 -105 195 257 0 0 chr3 95985872 95985946 -122051212 + (TATG)n Simple_repeat Simple_repeat 1 74 0 258 307 0 10 chr3 95986637 95986738 -122050420 + L1ME LINE L1 5791 5890 -280 28 61 0 0 chr3 95986771 95986820 -122050338 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr3 95987963 95987991 -122049167 + AT_rich Low_complexity Low_complexity 1 28 0 1473 171 4 0 chr3 95988414 95988642 -122048516 + AluSx SINE Alu 1 229 -83 21 57 0 0 chr3 95990629 95990664 -122046494 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr3 95990675 95990704 -122046454 + AT_rich Low_complexity Low_complexity 1 29 0 3776 205 11 5 chr3 95990911 95991789 -122045369 + L1 LINE L1 4151 5034 -1112 1013 67 8 8 chr3 95992817 95992951 -122044207 + AluY SINE Alu 1 134 -177 2162 89 7 7 chr3 95992951 95993280 -122043878 + AluY SINE Alu 1 311 0 327 288 118 13 chr3 95993449 95993602 -122043556 - L1ME LINE L1 -633 6035 5867 732 276 105 4 chr3 95993633 95993861 -122043297 + MIR SINE MIR 12 262 0 401 305 94 48 chr3 95994266 95994725 -122042433 - L1ME LINE L1 -1293 5351 4872 722 193 0 0 chr3 95994967 95995102 -122042056 + L1PB4 LINE L1 6014 6148 -8 327 306 120 0 chr3 95995417 95995525 -122041633 - LTR33A LTR ERVL -344 179 59 327 307 39 42 chr3 95995622 95995931 -122041227 - L1ME LINE L1 -2155 4489 4182 24 0 0 0 chr3 95996036 95996060 -122041098 + AT_rich Low_complexity Low_complexity 1 24 0 308 252 17 25 chr3 95996145 95996264 -122040894 + (TA)n Simple_repeat Simple_repeat 1 118 0 302 261 67 58 chr3 95996265 95996594 -122040564 - L1ME LINE L1 -2885 3759 3428 1106 167 9 28 chr3 95997679 95997895 -122039263 - AluJb SINE Alu -100 212 1 514 91 45 34 chr3 95998159 95998335 -122038823 + (TA)n Simple_repeat Simple_repeat 1 178 0 361 43 54 33 chr3 95998381 95998473 -122038685 + (TA)n Simple_repeat Simple_repeat 1 94 0 380 351 74 21 chr3 96000326 96000568 -122036590 + MIR SINE MIR 5 259 -3 349 319 71 0 chr3 96001673 96001855 -122035303 + L2 LINE L2 3119 3313 0 1208 254 102 17 chr3 96002195 96002672 -122034486 - L1ME LINE L1 -401 5763 5248 288 207 58 50 chr3 96003160 96003281 -122033877 - L1ME LINE L1 -6355 187 66 331 286 69 42 chr3 96003364 96003696 -122033462 - L1ME LINE L1 -1746 4400 4060 15313 206 130 23 chr3 96003745 96008878 -122028280 + L1PBa LINE L1 1 5846 -1016 736 181 0 69 chr3 96008878 96009038 -122028120 - Tigger2a DNA MER2_type -284 150 2 536 273 103 33 chr3 96009063 96009634 -122027524 - L1ME LINE L1 -2207 3939 3329 3999 22 0 0 chr3 96009850 96010313 -122026845 - L1PA2 LINE L1 -1 6154 5692 1287 20 7 0 chr3 96010313 96010466 -122026692 + L1P1 LINE L1 5386 5539 -616 29 94 0 0 chr3 96010588 96010673 -122026485 + AT_rich Low_complexity Low_complexity 1 85 0 188 24 98 0 chr3 96010883 96010924 -122026234 + (TA)n Simple_repeat Simple_repeat 2 46 0 247 318 22 57 chr3 96012325 96012487 -122024671 + MER5A DNA MER1_type 1 145 -33 1263 274 79 44 chr3 96013182 96013376 -122023782 - MLT1F LTR MaLR 0 542 356 1989 154 0 6 chr3 96013376 96013687 -122023471 - AluSx SINE Alu -3 309 1 1263 274 79 44 chr3 96013687 96014011 -122023147 - MLT1F LTR MaLR -186 356 6 279 328 37 78 chr3 96015534 96015802 -122021356 + L2 LINE L2 2928 3184 -129 2384 206 35 11 chr3 96015806 96016345 -122020813 + MER89 LTR ERV1 1 552 -7 1148 194 86 124 chr3 96016387 96016776 -122020382 + MLT2D LTR ERVL 3 405 -9 189 0 0 0 chr3 96016776 96016797 -122020361 + (TC)n Simple_repeat Simple_repeat 2 22 0 369 0 0 0 chr3 96016797 96016838 -122020320 + (CA)n Simple_repeat Simple_repeat 2 42 0 1148 194 86 124 chr3 96016838 96016875 -122020283 + MLT2D LTR ERVL 403 414 0 281 293 24 65 chr3 96016915 96016965 -122020193 + L2 LINE L2 3192 3242 -71 1578 219 43 6 chr3 96016965 96017317 -122019841 - MLT1A1 LTR MaLR 0 365 1 281 293 24 65 chr3 96017317 96017389 -122019769 + L2 LINE L2 3242 3309 -4 1174 204 0 31 chr3 96018996 96019251 -122017907 - AluJb SINE Alu 0 312 66 25 51 0 0 chr3 96019259 96019298 -122017860 + AT_rich Low_complexity Low_complexity 1 39 0 253 254 106 49 chr3 96021833 96021975 -122015183 - L2 LINE L2 -60 3253 3104 21 0 0 0 chr3 96022038 96022059 -122015099 + AT_rich Low_complexity Low_complexity 1 21 0 476 306 143 16 chr3 96022566 96022811 -122014347 + LTR16A LTR ERVL 92 367 -83 207 329 27 80 chr3 96022870 96023095 -122014063 - L2 LINE L2 -1868 1446 1234 239 367 77 10 chr3 96023113 96023424 -122013734 + L2 LINE L2 1979 2310 -1004 518 0 16 0 chr3 96023475 96023537 -122013621 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 180 348 0 22 chr3 96023740 96023829 -122013329 + L2 LINE L2 2589 2675 -639 562 268 60 22 chr3 96024593 96024776 -122012382 + MLT1D LTR MaLR 1 190 -315 1255 221 37 106 chr3 96024806 96025241 -122011917 + MLT1D-int LTR MaLR 961 1365 -6 1454 229 83 33 chr3 96025246 96025727 -122011431 + MLT1D LTR MaLR 1 505 0 41 21 0 0 chr3 96028576 96028624 -122008534 + AT_rich Low_complexity Low_complexity 1 48 0 30 59 0 0 chr3 96030113 96030164 -122006994 + AT_rich Low_complexity Low_complexity 1 51 0 500 318 40 83 chr3 96030481 96030877 -122006281 + MLT1I LTR MaLR 28 406 -3 405 289 13 51 chr3 96034465 96034760 -122002398 + GA-rich Low_complexity Low_complexity 1 283 0 185 196 20 0 chr3 96034852 96034903 -122002255 + GA-rich Low_complexity Low_complexity 1 52 0 701 208 15 58 chr3 96034903 96035023 -122002135 + MLT1B LTR MaLR 64 188 -202 257 0 30 0 chr3 96035023 96035056 -122002102 + (TG)n Simple_repeat Simple_repeat 1 34 0 701 208 15 58 chr3 96035056 96035231 -122001927 + MLT1B LTR MaLR 188 322 -68 353 284 0 0 chr3 96035232 96035320 -122001838 - L1MC4 LINE L1 -1341 6701 6614 275 127 0 36 chr3 96035320 96035375 -122001783 + (CATATA)n Simple_repeat Simple_repeat 6 58 0 328 150 0 17 chr3 96035376 96035436 -122001722 + MLT1B LTR MaLR 332 390 0 1695 144 23 0 chr3 96035806 96036062 -122001096 - AluSq SINE Alu -12 301 40 306 224 35 12 chr3 96036277 96036362 -122000796 - LTR50 LTR ERVL 0 795 709 5294 47 0 13 chr3 96036391 96037067 -122000091 + L1PA4 LINE L1 5488 6154 -1 251 331 91 33 chr3 96037079 96037321 -121999837 - LTR50 LTR ERVL -164 631 376 23 0 0 0 chr3 96037591 96037614 -121999544 + AT_rich Low_complexity Low_complexity 1 23 0 1090 184 5 27 chr3 96037959 96038146 -121999012 + L1M2 LINE L1 5605 5788 -503 2826 87 49 7 chr3 96038146 96038572 -121998586 + MLT2A1 LTR ERVL 1 444 0 1090 184 5 27 chr3 96038572 96038607 -121998551 + L1M2 LINE L1 5788 5822 -469 966 213 40 30 chr3 96038605 96038906 -121998252 - L1M4 LINE L1 -810 6147 5844 * 1020 252 48 19 chr3 96038906 96039215 -121997943 + MLT1C LTR MaLR 10 327 -140 290 255 75 90 chr3 96039216 96039404 -121997754 - L1M4 LINE L1 -5535 1324 1140 * 10206 51 14 1 chr3 96039403 96041266 -121995892 + L1PA4 LINE L1 4130 6018 -287 3440 151 20 27 chr3 96041448 96042284 -121994874 + L1P5 LINE L1 4971 5806 -345 474 160 11 53 chr3 96042284 96042471 -121994687 + (TA)n Simple_repeat Simple_repeat 2 180 0 283 247 0 22 chr3 96042483 96042572 -121994586 + L1MC4 LINE L1 6615 6701 -1341 192 253 0 0 chr3 96042609 96042684 -121994474 + (TA)n Simple_repeat Simple_repeat 2 76 0 229 292 22 0 chr3 96042685 96042774 -121994384 - L1MC4 LINE L1 -1340 6702 6612 251 138 8 69 chr3 96042774 96042904 -121994254 + (TA)n Simple_repeat Simple_repeat 1 122 0 23 0 0 0 chr3 96043272 96043295 -121993863 + AT_rich Low_complexity Low_complexity 1 23 0 243 434 0 0 chr3 96043893 96044006 -121993152 - L1M3b LINE L1 -5074 1207 1095 424 349 103 30 chr3 96044495 96044862 -121992296 - L1M3b LINE L1 -5884 397 4 22 0 0 0 chr3 96045303 96045325 -121991833 + AT_rich Low_complexity Low_complexity 1 22 0 36 0 0 0 chr3 96045407 96045443 -121991715 + AT_rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr3 96045542 96045575 -121991583 + AT_rich Low_complexity Low_complexity 1 33 0 9403 136 22 0 chr3 96045746 96047161 -121989997 + THE1B-int LTR MaLR 135 1580 0 2152 152 31 14 chr3 96047163 96047519 -121989639 + THE1B LTR MaLR 3 364 0 2655 114 15 2 chr3 96047519 96047921 -121989237 + L1PA12 LINE L1 5655 6061 -107 4320 113 18 32 chr3 96048050 96048778 -121988380 + L1MA2 LINE L1 5587 6304 0 1603 241 86 2 chr3 96048842 96049661 -121987497 - MER45B DNA AcHobo 0 1040 10 1921 171 20 3 chr3 96050408 96050754 -121986404 - MLT1B LTR MaLR -38 352 1 345 330 19 0 chr3 96050761 96050867 -121986291 + ERVL LTR ERVL 4145 4252 -1512 397 306 78 33 chr3 96051016 96051261 -121985897 + ERVL LTR ERVL 4644 4899 -865 425 209 35 33 chr3 96051276 96051411 -121985747 + ERVL LTR ERVL 4819 4997 -530 2002 234 122 58 chr3 96051558 96051997 -121985161 + Charlie2a DNA MER1_type 1523 1932 -930 1250 200 35 41 chr3 96051997 96052287 -121984871 - AluJo SINE Alu -14 288 1 2002 234 122 58 chr3 96052287 96053025 -121984133 + Charlie2a DNA MER1_type 1932 2776 -86 485 310 83 96 chr3 96053064 96054011 -121983147 - L2 LINE L2 -1252 2062 1058 2354 211 32 18 chr3 96054041 96054604 -121982554 - LTR49 LTR ERV1 -23 572 2 464 191 101 74 chr3 96054604 96054793 -121982365 - L1MB8 LINE L1 -20 6158 5965 637 230 9 47 chr3 96054842 96054992 -121982166 - L1ME2 LINE L1 -144 6020 5869 2169 114 142 5 chr3 96054992 96055386 -121981772 - LTR7 LTR ERV1 -2 448 1 637 230 9 47 chr3 96055386 96055415 -121981743 - L1ME2 LINE L1 -295 5869 5840 3431 77 20 26 chr3 96055415 96055923 -121981235 + LTR17 LTR ERV1 1 505 -275 272 237 59 34 chr3 96056456 96056574 -121980584 + LTR16C LTR ERVL 367 487 -4 1304 189 0 68 chr3 96057499 96057764 -121979394 - AluJo SINE Alu -65 247 1 644 340 12 27 chr3 96057811 96058067 -121979091 + MIR SINE MIR 9 260 -2 21 0 0 0 chr3 96060026 96060047 -121977111 + AT_rich Low_complexity Low_complexity 1 21 0 477 353 10 5 chr3 96061054 96061261 -121975897 + Charlie8 DNA MER1_type 46 253 -2164 1055 206 4 49 chr3 96061466 96061742 -121975416 + AluJo SINE Alu 47 311 0 22 88 0 0 chr3 96062130 96062187 -121974971 + AT_rich Low_complexity Low_complexity 1 57 0 21 57 0 0 chr3 96063431 96063466 -121973692 + AT_rich Low_complexity Low_complexity 1 35 0 1902 152 52 5 chr3 96067223 96067778 -121969380 - L1PB1 LINE L1 -595 5556 4971 1330 126 13 35 chr3 96067778 96068008 -121969150 + L1PB1 LINE L1 5562 5786 -365 253 67 22 22 chr3 96068011 96068056 -121969102 + (TA)n Simple_repeat Simple_repeat 2 46 0 339 25 0 0 chr3 96068066 96068106 -121969052 + (CA)n Simple_repeat Simple_repeat 2 41 0 2330 84 5 41 chr3 96068106 96068473 -121968685 + L1PB1 LINE L1 5793 6146 -5 240 393 121 11 chr3 96068873 96069153 -121968005 + L2 LINE L2 2665 2975 -339 285 370 19 0 chr3 96069427 96069535 -121967623 + L2 LINE L2 3161 3270 -2 1131 228 89 28 chr3 96070643 96070968 -121966190 - MLT1D LTR MaLR 0 505 161 321 233 62 68 chr3 96071010 96071156 -121966002 + MER57A LTR ERV1 64 208 -195 1234 213 54 61 chr3 96071249 96071526 -121965632 - MSTB LTR MaLR 0 426 202 329 174 58 0 chr3 96071526 96071595 -121965563 - L1PA6 LINE L1 -6 6148 6076 1234 213 54 61 chr3 96071595 96071796 -121965362 - MSTB LTR MaLR -224 202 1 236 211 0 0 chr3 96071798 96071855 -121965303 + MER57A LTR ERV1 347 403 0 * 606 242 176 0 chr3 96071855 96071998 -121965160 - MLT1D LTR MaLR -332 173 4 198 0 0 0 chr3 96072886 96072908 -121964250 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 41 17 0 17 chr3 96073056 96073080 -121964078 + AT_rich Low_complexity Low_complexity 1 24 -34 1956 91 14 30 chr3 96073080 96073377 -121963781 + AluSc SINE Alu 1 292 -17 41 17 0 17 chr3 96073377 96073411 -121963747 + AT_rich Low_complexity Low_complexity 24 58 0 290 298 8 81 chr3 96073998 96074122 -121963036 - L2 LINE L2 -6 3307 3193 25 31 0 0 chr3 96074194 96074226 -121962932 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr3 96074745 96074767 -121962391 + AT_rich Low_complexity Low_complexity 1 22 0 399 224 90 8 chr3 96075196 96075346 -121961812 - LTR48 LTR ERV1 -13 740 380 781 238 164 60 chr3 96075384 96075816 -121961342 - LTR48 LTR ERV1 -305 482 6 198 222 0 0 chr3 96076306 96076360 -121960798 + (TA)n Simple_repeat Simple_repeat 2 55 0 1264 225 14 17 chr3 96076801 96077094 -121960064 - AluJo SINE Alu -20 292 1 2245 171 13 13 chr3 96077095 96077604 -121959554 - L1M2 LINE L1 -618 5673 5165 461 128 0 13 chr3 96078407 96078485 -121958673 - MADE1 DNA Mariner -2 78 2 254 346 13 0 chr3 96079390 96079468 -121957690 - MIR SINE MIR -169 93 15 747 11 0 0 chr3 96080858 96080946 -121956212 - L1P LINE L1 -747 5408 5321 6233 30 1 0 chr3 96080946 96081684 -121955474 + L1PA3 LINE L1 5414 6152 -3 378 0 0 0 chr3 96082644 96082686 -121954472 + (TG)n Simple_repeat Simple_repeat 1 42 0 1817 224 24 53 chr3 96083388 96083896 -121953262 - MLT1D LTR MaLR -9 496 4 258 32 0 0 chr3 96083944 96083975 -121953183 + (TG)n Simple_repeat Simple_repeat 1 31 0 24 53 0 0 chr3 96083990 96084028 -121953130 + AT_rich Low_complexity Low_complexity 1 38 0 369 256 60 43 chr3 96084872 96084989 -121952169 - MLT1H LTR MaLR -227 322 204 25 0 0 0 chr3 96085165 96085190 -121951968 + AT_rich Low_complexity Low_complexity 1 25 0 406 74 0 0 chr3 96088208 96088262 -121948896 + MADE1 DNA Mariner 27 80 0 649 226 50 59 chr3 96088784 96088882 -121948276 - MER4C LTR ERV1 0 669 572 2140 120 51 20 chr3 96088882 96089233 -121947925 - THE1B LTR MaLR 0 364 3 649 226 50 59 chr3 96089233 96089494 -121947664 - MER4C LTR ERV1 -97 572 156 * 658 169 232 10 chr3 96089490 96089697 -121947461 - MER4C LTR ERV1 -212 253 1 4460 55 5 5 chr3 96090343 96090928 -121946230 - LTR14C LTR ERVK -2 585 1 25 31 0 0 chr3 96093087 96093119 -121944039 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr3 96094348 96094377 -121942781 + AT_rich Low_complexity Low_complexity 1 29 0 3015 71 0 0 chr3 96095086 96095482 -121941676 - L1P LINE L1 -1455 4691 4296 5553 65 6 0 chr3 96095483 96096204 -121940954 + L1PA6 LINE L1 5425 6149 -5 2117 123 3 3 chr3 96097339 96097649 -121939509 + AluSg SINE Alu 1 310 0 1463 220 7 7 chr3 96097649 96097952 -121939206 + AluJo SINE Alu 1 304 -8 21 36 0 0 chr3 96098071 96098099 -121939059 + AT_rich Low_complexity Low_complexity 1 28 0 198 143 0 0 chr3 96098219 96098254 -121938904 + (TATATG)n Simple_repeat Simple_repeat 6 40 0 967 279 115 52 chr3 96098527 96099656 -121937502 + L1M4 LINE L1 3169 4368 -1778 226 290 0 32 chr3 96099845 96099938 -121937220 + L1MC4 LINE L1 6614 6703 -1339 670 162 18 17 chr3 96099962 96100113 -121937045 - MLT2D LTR ERVL -48 366 250 421 293 37 25 chr3 96100423 96100665 -121936493 + L1M4 LINE L1 4549 4793 -1353 475 319 42 54 chr3 96100683 96101109 -121936049 - L1M4 LINE L1 -874 5272 4852 21 0 0 0 chr3 96102505 96102526 -121934632 + AT_rich Low_complexity Low_complexity 1 21 0 193 384 35 29 chr3 96103190 96103362 -121933796 - L2 LINE L2 -702 2612 2440 29 0 0 0 chr3 96103828 96103857 -121933301 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr3 96103997 96104020 -121933138 + AT_rich Low_complexity Low_complexity 1 23 0 686 210 8 125 chr3 96105120 96105262 -121931896 + LTR65 LTR ERV1 345 447 -222 1604 176 0 0 chr3 96105262 96105534 -121931624 + AluJb SINE Alu 12 283 -29 686 210 8 125 chr3 96105534 96105639 -121931519 + LTR65 LTR ERV1 447 563 -106 26 30 0 0 chr3 96106664 96106697 -121930461 + AT_rich Low_complexity Low_complexity 1 33 0 954 202 14 5 chr3 96106976 96107194 -121929964 + L1P3 LINE L1 8 227 -6234 22 56 0 0 chr3 96107519 96107555 -121929603 + AT_rich Low_complexity Low_complexity 1 36 0 1756 151 3 50 chr3 96109055 96109373 -121927785 - AluSx SINE Alu -8 304 2 227 254 0 0 chr3 96110041 96110100 -121927058 + (TTCA)n Simple_repeat Simple_repeat 1 59 0 441 278 38 15 chr3 96111261 96111394 -121925764 + MIR SINE MIR 81 216 -46 21 0 0 0 chr3 96112868 96112889 -121924269 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr3 96113286 96113312 -121923846 + AT_rich Low_complexity Low_complexity 1 26 0 222 213 21 0 chr3 96113577 96113624 -121923534 + (TG)n Simple_repeat Simple_repeat 2 49 0 1539 119 0 0 chr3 96113626 96113836 -121923322 + AluSg/x SINE Alu 80 289 -21 26 0 0 0 chr3 96113996 96114022 -121923136 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr3 96114867 96114890 -121922268 + AT_rich Low_complexity Low_complexity 1 23 0 301 221 11 11 chr3 96114897 96114992 -121922166 + (CATA)n Simple_repeat Simple_repeat 4 98 0 2536 215 98 34 chr3 96116352 96116903 -121920255 - L1 LINE L1 -2576 4156 3642 2407 73 0 25 chr3 96116903 96117220 -121919938 + AluY SINE Alu 1 309 -2 2536 215 98 34 chr3 96117220 96117466 -121919692 - L1 LINE L1 -3090 3642 3413 2069 123 10 16 chr3 96117466 96117775 -121919383 - AluSg SINE Alu -3 307 1 2536 215 98 34 chr3 96117775 96117926 -121919232 - L1 LINE L1 -3319 3413 3146 946 268 15 11 chr3 96117924 96118193 -121918965 - L1 LINE L1 -5732 921 652 * 566 239 62 122 chr3 96118373 96118758 -121918400 + MLT1A1 LTR MaLR 1 362 -3 1262 259 134 29 chr3 96118880 96120576 -121916582 - L1MCa LINE L1 -3105 3459 1588 14287 161 23 13 chr3 96120581 96121757 -121915401 - L1PA10 LINE L1 0 6168 5005 3387 80 13 7 chr3 96121757 96122207 -121914951 - MLT2A2 LTR ERVL 0 453 1 14287 161 23 13 chr3 96122207 96124611 -121912547 - L1PA10 LINE L1 -1163 5005 2537 1243 209 40 82 chr3 96124612 96125179 -121911979 - MLT2A2 LTR ERVL 0 554 1 4925 153 51 1 chr3 96125179 96126074 -121911084 - HERVL-A2 LTR ERVL 0 5654 4715 6478 230 7 31 chr3 96126079 96127987 -121909171 - L1PA10 LINE L1 -3606 2540 678 2274 73 0 54 chr3 96127987 96128300 -121908858 + AluY SINE Alu 1 296 -15 1308 292 36 56 chr3 96128487 96129245 -121907913 - L1MCa LINE L1 -5013 1032 292 2578 36 3 3 chr3 96129245 96129553 -121907605 - AluY SINE Alu -3 308 1 1308 292 36 56 chr3 96129553 96129671 -121907487 - L1MCa LINE L1 -5753 292 173 6199 111 7 10 chr3 96179701 96180669 -121856489 + L1P LINE L1 3898 4862 -1284 257 125 56 14 chr3 96180669 96180741 -121856417 + (TA)n Simple_repeat Simple_repeat 1 75 0 371 131 52 13 chr3 96181246 96181399 -121855759 + (TA)n Simple_repeat Simple_repeat 1 159 0 19148 139 14 46 chr3 96181534 96183616 -121853542 + L1PA6 LINE L1 430 2579 -3567 185 0 0 39 chr3 96183616 96183642 -121853516 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 19148 139 14 46 chr3 96183642 96184089 -121853069 + L1PA6 LINE L1 2579 3039 -3107 6691 74 5 0 chr3 96184089 96185230 -121851928 + L1PA6 LINE L1 5010 6154 0 19148 139 14 46 chr3 96185230 96186298 -121850860 + L1PA6 LINE L1 3039 3910 -2236 27 0 0 0 chr3 96186570 96186597 -121850561 + GC_rich Low_complexity Low_complexity 1 27 0 432 37 0 0 chr3 96186836 96186890 -121850268 + (TA)n Simple_repeat Simple_repeat 1 54 0 33 56 0 0 chr3 96187089 96187143 -121850015 + AT_rich Low_complexity Low_complexity 1 54 0 4664 228 40 36 chr3 96187161 96187660 -121849498 + L1MA2 LINE L1 2752 3247 -3057 246 81 0 0 chr3 96187660 96187697 -121849461 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 4664 228 40 36 chr3 96187697 96188818 -121848340 + L1MA2 LINE L1 3247 4362 -1942 1594 157 65 0 chr3 96188818 96189261 -121847897 - AluSx SINE Alu 0 462 3 4664 228 40 36 chr3 96189261 96191081 -121846077 + L1MA2 LINE L1 4362 6304 0 10521 212 41 8 chr3 96191092 96192688 -121844470 + L1MA7 LINE L1 2585 4127 -2164 189 0 0 0 chr3 96192688 96192709 -121844449 + (TA)n Simple_repeat Simple_repeat 2 22 0 10521 212 41 8 chr3 96192709 96194422 -121842736 + L1MA7 LINE L1 4127 6014 -277 289 253 0 12 chr3 96194669 96194752 -121842406 + L1MA8 LINE L1 5973 6054 -237 606 155 17 0 chr3 96194753 96194869 -121842289 + L1MA7 LINE L1 6162 6279 -12 1582 252 82 12 chr3 96194896 96195324 -121841834 - MLT2B1 LTR ERVL -60 460 3 216 0 0 0 chr3 96195592 96195616 -121841542 + (TTA)n Simple_repeat Simple_repeat 3 26 0 2420 81 3 0 chr3 96195616 96195937 -121841221 - L1PA7 LINE L1 -18 6136 5815 9931 113 5 1 chr3 96195947 96198191 -121838967 - L1PA7 LINE L1 -11 6143 3896 3992 108 17 16 chr3 96198191 96198828 -121838330 + L1PA7 LINE L1 3254 3891 -2255 27 87 0 0 chr3 96199205 96199274 -121837884 + AT_rich Low_complexity Low_complexity 1 69 0 793 207 48 58 chr3 96201796 96201835 -121835323 - MLT1B LTR MaLR 0 390 352 1096 220 110 39 chr3 96201835 96202117 -121835041 + AluJo SINE Alu 1 302 0 793 207 48 58 chr3 96202117 96202285 -121834873 - MLT1B LTR MaLR -38 352 185 363 113 0 81 chr3 96202844 96202906 -121834252 - L1PA8A LINE L1 -8 6123 6067 206 168 20 20 chr3 96203079 96203180 -121833978 + (TA)n Simple_repeat Simple_repeat 2 102 0 632 281 32 43 chr3 96203965 96204405 -121832753 + L1ME2 LINE L1 5717 6149 -17 1215 287 61 44 chr3 96204493 96205131 -121832027 + L1ME3A LINE L1 5517 6165 -5 565 263 83 0 chr3 96206086 96206219 -121830939 - FRAM SINE Alu -30 146 3 219 36 0 0 chr3 96206346 96206374 -121830784 + (CAAAAA)n Simple_repeat Simple_repeat 4 31 0 534 280 17 0 chr3 96206840 96207015 -121830143 + L1M4 LINE L1 4383 4560 -1586 13181 211 15 28 chr3 96207207 96211242 -121825916 - L1P3 LINE L1 -2410 4051 3 2280 131 19 16 chr3 96211270 96211644 -121825514 - THE1C LTR MaLR 0 375 1 515 289 105 47 chr3 96211691 96212474 -121824684 - L1MEc LINE L1 -2420 3795 2968 418 260 73 82 chr3 96212502 96212827 -121824331 - L1MEc LINE L1 -4908 1297 1004 1441 340 141 32 chr3 96213874 96215187 -121821971 - L2 LINE L2 -995 2319 864 24 53 0 0 chr3 96215741 96215779 -121821379 + AT_rich Low_complexity Low_complexity 1 38 0 23 54 0 0 chr3 96215808 96215845 -121821313 + AT_rich Low_complexity Low_complexity 1 37 0 717 45 0 0 chr3 96217460 96217548 -121819610 + AluY SINE Alu 40 127 -184 642 43 0 32 chr3 96217548 96217641 -121819517 + L1PA4 LINE L1 6066 6155 0 1358 82 6 6 chr3 96217686 96217869 -121819289 + AluYa5 SINE Alu 119 301 -10 333 374 40 18 chr3 96219310 96219537 -121817621 + HAL1b LINE L1 72 303 -1045 304 218 0 0 chr3 96219551 96219606 -121817552 - AluJ/FRAM SINE Alu -19 283 229 335 332 50 5 chr3 96219706 96219905 -121817253 + HAL1b LINE L1 397 604 -744 328 274 127 19 chr3 96219952 96220109 -121817049 + HAL1b LINE L1 684 857 -491 1404 126 16 57 chr3 96220560 96220806 -121816352 + AluSq SINE Alu 1 236 -77 1120 174 35 23 chr3 96220866 96221125 -121816033 - L1MA8 LINE L1 -2 6289 6028 332 254 113 14 chr3 96221551 96221693 -121815465 + L1MC4 LINE L1 6993 7148 -894 769 239 113 25 chr3 96221850 96222089 -121815069 - MER70B LTR ERVL -166 412 153 621 243 241 40 chr3 96222089 96222467 -121814691 + L1MC4 LINE L1 7588 8041 -1 261 243 14 14 chr3 96222915 96222985 -121814173 + MIR SINE MIR 20 89 -173 383 236 123 28 chr3 96223169 96223275 -121813883 - MER5A DNA MER1_type -73 116 1 33 25 0 0 chr3 96224389 96224429 -121812729 + AT_rich Low_complexity Low_complexity 1 40 0 27 29 0 0 chr3 96224875 96224909 -121812249 + AT_rich Low_complexity Low_complexity 1 34 0 3133 170 38 44 chr3 96226632 96227149 -121810009 - L1MA9 LINE L1 0 6312 5798 424 44 15 29 chr3 96227149 96227217 -121809941 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 3133 170 38 44 chr3 96227217 96227382 -121809776 - L1MA9 LINE L1 -514 5798 5634 21 57 0 0 chr3 96227427 96227462 -121809696 + AT_rich Low_complexity Low_complexity 1 35 0 1147 189 102 37 chr3 96227792 96228036 -121809122 + AluJo SINE Alu 9 268 -44 195 42 0 0 chr3 96228049 96228073 -121809085 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 206 263 0 88 chr3 96230814 96230871 -121806287 - MIR SINE MIR -162 100 49 25 31 0 0 chr3 96230996 96231028 -121806130 + AT_rich Low_complexity Low_complexity 1 32 0 1930 156 137 11 chr3 96231955 96232334 -121804824 + MSTA LTR MaLR 1 427 -1 339 130 0 0 chr3 96232568 96232622 -121804536 + (TA)n Simple_repeat Simple_repeat 2 55 0 182 37 37 0 chr3 96232960 96232987 -121804171 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 257 322 42 8 chr3 96233118 96233236 -121803922 - L2 LINE L2 0 3313 3192 292 374 145 16 chr3 96236043 96236361 -121800797 - L3 LINE CR1 -1 1576 1218 2501 151 68 0 chr3 96238425 96238895 -121798263 + L1PB4 LINE L1 5651 6152 -4 9699 143 20 2 chr3 96239449 96241833 -121795325 + L1PA10 LINE L1 3739 6162 -6 29 0 0 0 chr3 96242441 96242470 -121794688 + AT_rich Low_complexity Low_complexity 1 29 0 1035 227 98 14 chr3 96243558 96243853 -121793305 + L1MC2 LINE L1 6017 6336 -8 1392 247 28 8 chr3 96244140 96244500 -121792658 + MLT1A2 LTR MaLR 4 370 -4 212 392 30 36 chr3 96244537 96244703 -121792455 + MIR3 SINE MIR 16 180 -28 589 234 12 18 chr3 96244713 96244884 -121792274 - MER53 DNA DNA -1 188 19 618 292 9 4 chr3 96244936 96245108 -121792050 - MER5A DNA MER1_type -1 188 8 30 83 0 0 chr3 96245186 96245258 -121791900 + AT_rich Low_complexity Low_complexity 1 72 0 220 324 118 12 chr3 96246227 96246397 -121790761 - MIR SINE MIR -71 191 4 256 92 62 77 chr3 96246402 96246467 -121790691 - MLT2B1 LTR ERVL -1 519 456 228 171 26 26 chr3 96246468 96246544 -121790614 + (TA)n Simple_repeat Simple_repeat 2 77 0 1054 256 15 40 chr3 96246544 96246818 -121790340 + L1M3b LINE L1 1 267 -6014 1534 109 22 0 chr3 96246920 96247149 -121790009 - L1PA8 LINE L1 -33 6139 5906 832 215 3 111 chr3 96247162 96247371 -121789787 - L1 LINE L1 -3663 2483 2324 1945 158 3 3 chr3 96247371 96247681 -121789477 - AluSx SINE Alu 0 312 3 832 215 3 111 chr3 96247681 96247815 -121789343 - L1 LINE L1 -3822 2324 2177 * 2298 92 9 12 chr3 96247810 96248135 -121789023 - L1P LINE L1 -1826 4320 3997 6247 88 13 1 chr3 96248135 96249404 -121787754 + L1PA7 LINE L1 4839 6138 -16 381 86 0 0 chr3 96249410 96249468 -121787690 + (TA)n Simple_repeat Simple_repeat 1 58 0 682 201 7 54 chr3 96249741 96250019 -121787139 - L1PA8A LINE L1 -107 6024 5760 * 2406 125 59 3 chr3 96250000 96250564 -121786594 - L1PA8A LINE L1 -609 5522 4938 * 5037 152 12 3 chr3 96250563 96251417 -121785741 + L1PA8A LINE L1 4061 4921 -1225 275 219 14 14 chr3 96251905 96251978 -121785180 + (TG)n Simple_repeat Simple_repeat 2 74 0 189 147 0 0 chr3 96252658 96252692 -121784466 + (GGAA)n Simple_repeat Simple_repeat 4 37 0 23 0 0 0 chr3 96252977 96253000 -121784158 + AT_rich Low_complexity Low_complexity 1 23 0 1098 183 108 4 chr3 96253396 96253637 -121783521 + MLT2D LTR ERVL 5 270 -144 34 84 0 0 chr3 96253903 96253986 -121783172 + AT_rich Low_complexity Low_complexity 1 83 0 237 119 0 0 chr3 96254587 96254629 -121782529 + (GA)n Simple_repeat Simple_repeat 1 42 0 1414 213 227 18 chr3 96254793 96255243 -121781915 - MER90 LTR ERV1 0 614 71 244 264 88 22 chr3 96255368 96255459 -121781699 - LTR33 LTR ERVL -402 119 23 31 58 0 0 chr3 96255641 96255693 -121781465 + AT_rich Low_complexity Low_complexity 1 52 0 348 324 102 29 chr3 96255789 96256104 -121781054 + L2 LINE L2 2469 2806 -508 252 151 0 81 chr3 96257443 96257529 -121779629 + (TAAA)n Simple_repeat Simple_repeat 1 79 0 217 167 21 0 chr3 96257633 96257681 -121779477 + (TG)n Simple_repeat Simple_repeat 2 50 0 979 277 0 4 chr3 96257803 96258063 -121779095 - AluJo SINE Alu -12 300 42 360 216 0 0 chr3 96258199 96258301 -121778857 + (TA)n Simple_repeat Simple_repeat 1 102 0 22 0 0 0 chr3 96258848 96258870 -121778288 + AT_rich Low_complexity Low_complexity 1 22 0 218 354 62 9 chr3 96258975 96259088 -121778070 + L2 LINE L2 3195 3313 0 297 331 50 25 chr3 96259224 96259345 -121777813 + MIR3 SINE MIR 75 198 -10 185 62 0 31 chr3 96262018 96262050 -121775108 + (TTTTTA)n Simple_repeat Simple_repeat 6 36 0 277 341 0 0 chr3 96262368 96262453 -121774705 + CT-rich Low_complexity Low_complexity 2 86 0 * 303 303 25 0 chr3 96262428 96262550 -121774608 + (TCTA)n Simple_repeat Simple_repeat 2 126 0 290 87 22 0 chr3 96262565 96262611 -121774547 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 739 266 105 68 chr3 96262822 96263458 -121773700 - L1MC5 LINE L1 -282 7679 7020 6545 159 38 3 chr3 96263464 96264649 -121772509 - Tigger3b DNA MER2_type -5 1226 1 550 303 126 15 chr3 96264700 96265033 -121772125 - L1MC4 LINE L1 -986 7554 7185 1888 119 54 3 chr3 96265286 96265580 -121771578 - AluSp SINE Alu -4 309 1 2009 131 0 22 chr3 96265819 96266132 -121771026 - AluSx SINE Alu -6 306 1 390 285 109 5 chr3 96266281 96266502 -121770656 - L1MC4 LINE L1 -1849 6457 6214 403 251 58 100 chr3 96266733 96267112 -121770046 - L1MC4 LINE L1 -961 5683 5321 198 71 0 0 chr3 96267117 96267145 -121770013 + (TG)n Simple_repeat Simple_repeat 2 29 0 1154 241 93 29 chr3 96267171 96267668 -121769490 + LTR28 LTR ERV1 1 1232 -141 3270 279 72 44 chr3 96267704 96269648 -121767510 + LTR28-int LTR ERV1 1 2015 -4981 285 230 20 70 chr3 96269815 96269915 -121767243 + MER52A LTR ERV1 358 1181 -49 653 270 17 11 chr3 96269915 96270093 -121767065 + LTR28 LTR ERV1 1 179 -841 533 239 46 72 chr3 96270113 96270374 -121766784 + MER52A LTR ERV1 528 1232 -44 2220 309 117 22 chr3 96270723 96273038 -121764120 - L1MC4 LINE L1 -1376 5268 2736 317 302 50 17 chr3 96273107 96273408 -121763750 - L1MC4 LINE L1 -3968 2676 2366 361 217 5 54 chr3 96273455 96273639 -121763519 + (TA)n Simple_repeat Simple_repeat 1 175 0 329 203 25 43 chr3 96273681 96273844 -121763314 + (TA)n Simple_repeat Simple_repeat 2 161 0 876 294 87 39 chr3 96273850 96274565 -121762593 - L1MC4 LINE L1 -4482 2343 1444 680 253 109 0 chr3 96274783 96274985 -121762173 + MER58A DNA MER1_type 1 224 0 24 32 0 0 chr3 96275388 96275419 -121761739 + AT_rich Low_complexity Low_complexity 1 31 0 2000 135 0 0 chr3 96275493 96275775 -121761383 - AluSx SINE Alu -21 291 10 269 276 9 86 chr3 96276365 96276442 -121760716 - MIR SINE MIR -1 261 192 2441 24 41 0 chr3 96276442 96276733 -121760425 - AluY SINE Alu -8 303 1 269 276 9 86 chr3 96276733 96276760 -121760398 - MIR SINE MIR -70 192 165 1816 258 47 28 chr3 96276937 96277473 -121759685 - MER77 LTR ERV1 -4 601 56 24 0 0 0 chr3 96278972 96278996 -121758162 + AT_rich Low_complexity Low_complexity 1 24 0 666 202 40 0 chr3 96279143 96279316 -121757842 - L1MB4 LINE L1 0 6180 6001 22 56 0 0 chr3 96280158 96280194 -121756964 + AT_rich Low_complexity Low_complexity 1 36 0 30 0 0 0 chr3 96280450 96280480 -121756678 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr3 96280900 96280926 -121756232 + AT_rich Low_complexity Low_complexity 1 26 0 1980 129 0 3 chr3 96281148 96281435 -121755723 + AluSx SINE Alu 1 286 -26 333 261 57 0 chr3 96281438 96281526 -121755632 - L1MC4 LINE L1 -1339 6703 6611 339 147 9 18 chr3 96281541 96281650 -121755508 + (TA)n Simple_repeat Simple_repeat 2 109 0 686 284 10 39 chr3 96281680 96281884 -121755274 + MIR SINE MIR 65 262 0 1466 234 7 0 chr3 96283439 96283747 -121753411 + AluJo SINE Alu 3 312 0 737 97 0 9 chr3 96283761 96283874 -121753284 + (GGAA)n Simple_repeat Simple_repeat 3 114 0 287 318 130 16 chr3 96285766 96285958 -121751200 + L3 LINE CR1 1102 1315 -262 1953 134 48 39 chr3 96287259 96287532 -121749626 - L1PA14 LINE L1 -4 6157 5879 2168 146 43 3 chr3 96287532 96287881 -121749277 + THE1B LTR MaLR 2 364 0 1953 134 48 39 chr3 96287881 96287965 -121749193 - L1PA14 LINE L1 -282 5879 5797 36 0 0 0 chr3 96288578 96288614 -121748544 + AT_rich Low_complexity Low_complexity 1 36 0 592 336 19 0 chr3 96289041 96289252 -121747906 + MIR SINE MIR 17 231 -31 195 129 0 0 chr3 96289276 96289307 -121747851 + (TTA)n Simple_repeat Simple_repeat 1 31 0 3887 28 0 4 chr3 96289458 96289917 -121747241 - L1PA4 LINE L1 -1601 4545 4086 7251 38 0 1 chr3 96289917 96291504 -121745654 + L1PA4 LINE L1 4545 6157 0 246 125 0 0 chr3 96292621 96292661 -121744497 + L1MC1 LINE L1 6293 6332 -1 952 261 83 39 chr3 96292666 96293036 -121744122 + L1MDa LINE L1 180 731 -5809 1978 225 61 92 chr3 96293042 96293308 -121743850 + L1MDa LINE L1 819 1091 -5449 570 144 0 0 chr3 96293308 96293405 -121743753 - L1MA7 LINE L1 -14 6277 6181 1978 225 61 92 chr3 96293405 96293969 -121743189 + L1MDa LINE L1 1091 1624 -4916 4616 205 15 8 chr3 96293971 96294862 -121742296 + ERVL-D LTR ERVL 4364 5260 -504 319 236 57 19 chr3 96294934 96295040 -121742118 + ERVL-D LTR ERVL 5543 5652 -2 1204 219 44 14 chr3 96295042 96295362 -121741796 + MLT2D LTR ERVL 1 390 -7 3847 253 61 53 chr3 96295362 96295509 -121741649 - L1MB3 LINE L1 -252 6167 6023 1427 207 141 3 chr3 96295509 96295857 -121741301 - MSTD LTR MaLR 0 396 1 3847 253 61 53 chr3 96295857 96297199 -121739959 - L1MB3 LINE L1 -396 6023 4694 2215 131 17 6 chr3 96297199 96297550 -121739608 + THE1A LTR MaLR 1 355 0 10760 109 18 1 chr3 96297553 96299103 -121738055 + THE1A-int LTR MaLR 4 1580 0 2184 138 8 11 chr3 96299103 96299459 -121737699 + THE1A LTR MaLR 1 355 0 3847 253 61 53 chr3 96299459 96300266 -121736892 - L1MB3 LINE L1 -1725 4694 3854 1259 242 82 9 chr3 96300278 96300621 -121736537 - MLT1A2 LTR MaLR -6 368 1 845 271 18 18 chr3 96300621 96300901 -121736257 - L1MB3 LINE L1 -2530 3852 3573 1204 254 77 21 chr3 96301032 96301779 -121735379 - L1MB3 LINE L1 -4767 1617 772 2348 72 0 7 chr3 96302044 96302350 -121734808 - AluY SINE Alu -7 304 1 2154 124 0 3 chr3 96302379 96302693 -121734465 - AluSq SINE Alu 0 313 1 3089 224 35 75 chr3 96302835 96304136 -121733022 + L1MD1 LINE L1 4941 6177 -65 687 180 0 58 chr3 96304136 96304275 -121732883 - FLAM_C SINE Alu 0 133 3 3089 224 35 75 chr3 96304275 96304330 -121732828 + L1MD1 LINE L1 6177 6233 -9 29 47 0 0 chr3 96304381 96304424 -121732734 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr3 96304452 96304481 -121732677 + AT_rich Low_complexity Low_complexity 1 29 0 25 75 0 0 chr3 96304768 96304821 -121732337 + AT_rich Low_complexity Low_complexity 1 53 0 2367 78 3 3 chr3 96304990 96305299 -121731859 + AluSp SINE Alu 1 309 -4 414 0 0 0 chr3 96306796 96306842 -121730316 + (TA)n Simple_repeat Simple_repeat 2 47 0 317 210 45 28 chr3 96307010 96307186 -121729972 + C-rich Low_complexity Low_complexity 2 180 0 320 237 0 18 chr3 96307286 96307455 -121729703 + G-rich Low_complexity Low_complexity 1 166 0 1688 140 7 15 chr3 96307781 96308052 -121729106 + AluSq SINE Alu 30 298 -15 399 270 191 13 chr3 96309065 96309295 -121727863 - MLT1F LTR MaLR -13 529 259 251 274 65 91 chr3 96309333 96309563 -121727595 - MLT1F LTR MaLR -356 234 11 26 0 0 0 chr3 96310723 96310749 -121726409 + AT_rich Low_complexity Low_complexity 1 26 0 264 309 0 0 chr3 96311328 96311425 -121725733 - L1MEc LINE L1 -6206 190 94 284 281 11 0 chr3 96311465 96311554 -121725604 - L1MEc LINE L1 -6299 97 8 44 56 0 0 chr3 96311605 96311677 -121725481 + AT_rich Low_complexity Low_complexity 1 72 0 477 248 31 23 chr3 96311760 96311889 -121725269 + MER31B LTR ERV1 1 130 -336 26 30 0 0 chr3 96312030 96312063 -121725095 + AT_rich Low_complexity Low_complexity 1 33 0 5264 154 132 21 chr3 96312127 96313268 -121723890 + MER52C LTR ERV1 12 1278 0 1315 238 139 2 chr3 96314364 96314775 -121722383 - MLT1C LTR MaLR 0 467 1 6049 84 14 2 chr3 96315982 96316817 -121720341 + L1PA8 LINE L1 5326 6170 -2 2126 117 0 0 chr3 96317562 96317860 -121719298 + AluSg SINE Alu 2 299 -11 289 0 0 0 chr3 96317877 96317909 -121719249 + (TTTG)n Simple_repeat Simple_repeat 1 64 0 575 180 0 10 chr3 96317909 96318009 -121719149 - AluSg/x SINE Alu -1 312 183 218 348 51 29 chr3 96319547 96319685 -121717473 + MER5A DNA MER1_type 48 188 -1 26 0 0 0 chr3 96319743 96319769 -121717389 + AT_rich Low_complexity Low_complexity 1 26 0 371 293 119 41 chr3 96320254 96320667 -121716491 - L1MC/D LINE L1 -2032 5776 5332 195 114 0 0 chr3 96320697 96320732 -121716426 + (CA)n Simple_repeat Simple_repeat 2 36 0 375 289 0 19 chr3 96321932 96322036 -121715122 + MIR SINE MIR 161 262 0 388 285 29 29 chr3 96322491 96322628 -121714530 - MIR SINE MIR -79 183 47 305 309 36 0 chr3 96323353 96323437 -121713721 + L2 LINE L2 3191 3277 -36 23 0 0 0 chr3 96325783 96325806 -121711352 + AT_rich Low_complexity Low_complexity 1 23 0 1921 244 58 51 chr3 96328349 96328972 -121708186 + MER82 DNA MER2_type 21 647 -6 29 60 0 0 chr3 96329187 96329237 -121707921 + AT_rich Low_complexity Low_complexity 1 50 0 248 111 22 0 chr3 96329561 96329606 -121707552 + (CA)n Simple_repeat Simple_repeat 2 47 0 21 36 0 0 chr3 96329677 96329705 -121707453 + AT_rich Low_complexity Low_complexity 1 28 0 1121 300 163 9 chr3 96329937 96330477 -121706681 + L2 LINE L2 2350 2972 -342 2577 45 0 3 chr3 96330629 96330981 -121706177 - AluY SINE Alu 0 351 1 612 208 82 22 chr3 96331047 96331278 -121705880 + Charlie2 DNA MER1_type 2181 2425 -437 1526 189 28 34 chr3 96331471 96331794 -121705364 + MLT2C2 LTR ERVL 2 322 -142 240 141 78 0 chr3 96331774 96331838 -121705320 - MER109 Unknown Unknown -1383 1049 981 * 522 43 0 0 chr3 96333350 96333419 -121703739 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 234 0 0 0 chr3 96333425 96333451 -121703707 + (CA)n Simple_repeat Simple_repeat 1 26 0 1915 179 64 17 chr3 96334098 96334506 -121702652 - MSTB1 LTR MaLR -2 430 4 40 0 0 0 chr3 96334821 96334861 -121702297 + AT_rich Low_complexity Low_complexity 1 40 0 733 294 160 33 chr3 96337546 96337995 -121699163 - MER101B LTR ERV1 -39 531 26 1200 308 85 22 chr3 96439562 96440324 -121596834 - L1MC4 LINE L1 -398 7644 6835 1533 207 18 49 chr3 96440333 96440674 -121596484 + MLT2D LTR ERVL 9 395 -69 2286 79 0 20 chr3 96440674 96440978 -121596180 - AluSq SINE Alu -15 298 1 1533 207 18 49 chr3 96440978 96441012 -121596146 + MLT2D LTR ERVL 395 429 -35 229 159 114 0 chr3 96441042 96441086 -121596072 + MLT2D LTR ERVL 416 464 0 402 208 62 42 chr3 96441086 96441230 -121595928 - L1MC4a LINE L1 -1056 6752 6606 11325 71 11 3 chr3 96441968 96443523 -121593635 - L1P LINE L1 -1471 4675 3108 22 56 0 0 chr3 96443640 96443676 -121593482 + AT_rich Low_complexity Low_complexity 1 36 0 34 55 0 0 chr3 96443936 96443991 -121593167 + AT_rich Low_complexity Low_complexity 1 55 0 1057 319 73 28 chr3 96445002 96445509 -121591649 + L2 LINE L2 2215 2744 -570 309 306 103 72 chr3 96445554 96446028 -121591130 + MLT1J LTR MaLR 5 493 -18 623 178 41 27 chr3 96446095 96446241 -121590917 - MLT1C LTR MaLR 0 467 320 520 289 128 5 chr3 96446254 96446472 -121590686 + MLT1D LTR MaLR 261 505 0 355 331 21 0 chr3 96446693 96446835 -121590323 - L1 LINE L1 -1135 5011 4867 1099 246 56 57 chr3 96448874 96449275 -121587883 + LTR41 LTR ERVL 376 793 -2 468 281 37 0 chr3 96449447 96449582 -121587576 + MLT1E LTR MaLR 391 530 -63 28 0 0 0 chr3 96450716 96450744 -121586414 + AT_rich Low_complexity Low_complexity 1 28 0 4496 187 74 60 chr3 96450859 96452284 -121584874 + MER41-int LTR ERV1 604 2007 -3784 2179 102 0 16 chr3 96452284 96452589 -121584569 + AluSq SINE Alu 2 301 -12 4496 187 74 60 chr3 96452589 96453497 -121583661 + MER41-int LTR ERV1 2007 3789 -2002 685 228 39 113 chr3 96453616 96454051 -121583107 - L1MC4a LINE L1 -1155 6653 6251 201 129 0 0 chr3 96454216 96454247 -121582911 + (TG)n Simple_repeat Simple_repeat 2 32 0 487 321 102 58 chr3 96454434 96455078 -121582080 - L1 LINE L1 -1198 4948 4276 358 298 62 19 chr3 96455091 96455252 -121581906 - L1 LINE L1 -3217 2929 2762 4831 104 1 14 chr3 96455252 96455952 -121581206 - LTR8 LTR ERV1 0 691 1 11252 89 13 38 chr3 96455952 96457690 -121579468 - HUERS-P1 LTR ERV1 0 6263 4569 4890 47 3 8 chr3 96459416 96460037 -121577121 - L1PA5 LINE L1 0 6154 5537 592 205 9 0 chr3 96460043 96460155 -121577003 - FLAM_C SINE Alu -27 116 4 747 208 14 0 chr3 96460346 96460490 -121576668 - MSTC LTR MaLR -80 348 203 2377 119 8 0 chr3 96460512 96460866 -121576292 - L1PB1 LINE L1 -2 6149 5793 252 100 0 0 chr3 96460866 96460906 -121576252 + (TG)n Simple_repeat Simple_repeat 2 41 0 414 0 0 0 chr3 96460926 96460972 -121576186 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 308 100 0 0 chr3 96460973 96461023 -121576135 - L1P5 LINE L1 -319 5832 5783 255 170 0 0 chr3 96461024 96461071 -121576087 + (TATATG)n Simple_repeat Simple_repeat 4 50 0 322 106 0 13 chr3 96461071 96461132 -121576026 - L1M4 LINE L1 -318 5833 5783 182 108 54 0 chr3 96461133 96461170 -121575988 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 267 77 0 0 chr3 96461170 96461209 -121575949 - L1P5 LINE L1 -318 5833 5795 225 65 0 0 chr3 96461209 96461240 -121575918 + (TG)n Simple_repeat Simple_repeat 2 32 0 315 140 0 0 chr3 96461277 96461327 -121575831 - L1P5 LINE L1 -322 5832 5783 255 152 0 0 chr3 96461327 96461373 -121575785 + (TATATG)n Simple_repeat Simple_repeat 4 49 0 356 85 0 28 chr3 96461373 96461439 -121575719 - L1PB2 LINE L1 -318 5833 5782 263 219 0 12 chr3 96461450 96461532 -121575626 + (TA)n Simple_repeat Simple_repeat 1 81 0 9276 220 67 27 chr3 96461535 96464678 -121572480 - L1PB2 LINE L1 -361 5790 2503 624 222 0 30 chr3 96464678 96464813 -121572345 + FLAM_C SINE Alu 1 131 -2 9276 220 67 27 chr3 96464813 96464961 -121572197 - L1PB2 LINE L1 -3648 2503 2362 298 333 56 56 chr3 96466083 96466296 -121570862 - MLT1I LTR MaLR -2 407 195 807 239 0 16 chr3 96466378 96466566 -121570592 + MER5A DNA MER1_type 5 189 0 1252 269 91 36 chr3 96468125 96468597 -121568561 + LTR40a LTR ERVL 8 505 -14 317 315 88 9 chr3 96468612 96468828 -121568330 + L1MC4a LINE L1 5694 5926 -1882 2764 262 83 45 chr3 96468961 96469639 -121567519 + L1MDb LINE L1 199 849 -5694 2208 116 3 0 chr3 96469639 96469940 -121567218 - AluSp SINE Alu -11 302 1 2764 262 83 45 chr3 96469940 96470607 -121566551 + L1MDb LINE L1 849 1555 -4988 2553 205 47 6 chr3 96470642 96471150 -121566008 - MER44D DNA MER2_type -1 604 204 843 235 50 67 chr3 96471316 96471720 -121565438 + L1MDb LINE L1 2235 2631 -3909 1569 260 50 39 chr3 96471775 96472663 -121564495 + L1MDb LINE L1 2768 3743 -2797 2122 150 83 10 chr3 96474808 96475207 -121561951 + MSTA LTR MaLR 1 428 0 243 0 0 0 chr3 96475265 96475292 -121561866 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr3 96475297 96475325 -121561833 + AT_rich Low_complexity Low_complexity 1 28 0 403 309 16 52 chr3 96475479 96475558 -121561600 - MIR SINE MIR -25 237 157 2180 92 3 0 chr3 96475558 96475860 -121561298 - AluSg SINE Alu 0 303 1 403 309 16 52 chr3 96475860 96475970 -121561188 - MIR SINE MIR -105 157 54 222 37 0 0 chr3 96476581 96476608 -121560550 + (CATA)n Simple_repeat Simple_repeat 4 30 0 23 0 0 0 chr3 96476730 96476753 -121560405 + AT_rich Low_complexity Low_complexity 1 23 0 1120 160 0 20 chr3 96476920 96477164 -121559994 - L1 LINE L1 -1733 4413 4175 2619 165 27 8 chr3 96477170 96477685 -121559473 + L1 LINE L1 4469 4993 -1153 22 0 0 0 chr3 96479387 96479409 -121557749 + AT_rich Low_complexity Low_complexity 1 22 0 2089 102 18 0 chr3 96479575 96479860 -121557298 + AluSg1 SINE Alu 3 292 -17 1142 309 75 15 chr3 96479946 96480667 -121556491 + L1MDb LINE L1 4003 4766 -1774 337 113 15 68 chr3 96480698 96480831 -121556327 + (TA)n Simple_repeat Simple_repeat 1 126 0 245 0 21 62 chr3 96480950 96480998 -121556160 + (TA)n Simple_repeat Simple_repeat 1 46 0 24 32 0 0 chr3 96481840 96481871 -121555287 + AT_rich Low_complexity Low_complexity 1 31 0 234 200 12 24 chr3 96483352 96483437 -121553721 + GA-rich Low_complexity Low_complexity 2 85 0 24 85 0 0 chr3 96483498 96483557 -121553601 + AT_rich Low_complexity Low_complexity 1 59 0 301 260 16 32 chr3 96483794 96483917 -121553241 + CT-rich Low_complexity Low_complexity 3 123 0 597 200 39 23 chr3 96484707 96484837 -121552321 - FLAM_A SINE Alu 0 133 2 708 216 93 0 chr3 96486875 96487037 -121550121 - MER58B DNA MER1_type 0 341 165 1753 176 17 64 chr3 96487037 96487446 -121549712 - MLT1B LTR MaLR 0 390 1 22 0 0 0 chr3 96487626 96487648 -121549510 + AT_rich Low_complexity Low_complexity 1 22 0 2348 180 26 43 chr3 96488158 96488736 -121548422 + L1MA4 LINE L1 5731 6298 -2 381 260 156 45 chr3 96488778 96489547 -121547611 - Charlie2 DNA MER1_type -31 2831 1978 21 0 0 0 chr3 96489609 96489630 -121547528 + AT_rich Low_complexity Low_complexity 1 21 0 203 173 19 39 chr3 96490012 96490064 -121547094 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 22 56 0 0 chr3 96492311 96492347 -121544811 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 96492556 96492577 -121544581 + AT_rich Low_complexity Low_complexity 1 21 0 1671 254 41 13 chr3 96492705 96493261 -121543897 + L1ME2 LINE L1 5531 6102 -62 455 111 0 22 chr3 96493263 96493353 -121543805 + (TTCC)n Simple_repeat Simple_repeat 3 90 0 2804 272 67 46 chr3 96493433 96494666 -121542492 + L1MC4 LINE L1 6471 7729 -313 244 171 53 26 chr3 96494671 96494747 -121542411 + L1MC4 LINE L1 7962 8039 -3 2125 114 3 0 chr3 96494949 96495246 -121541912 + AluSc SINE Alu 1 298 -11 185 65 32 0 chr3 96495475 96495506 -121541652 + (TA)n Simple_repeat Simple_repeat 2 33 0 27 29 0 0 chr3 96497742 96497776 -121539382 + AT_rich Low_complexity Low_complexity 1 34 0 27 0 0 0 chr3 96498187 96498214 -121538944 + AT_rich Low_complexity Low_complexity 1 27 0 27 29 0 0 chr3 96499187 96499221 -121537937 + AT_rich Low_complexity Low_complexity 1 34 0 31 0 0 0 chr3 96499431 96499462 -121537696 + AT_rich Low_complexity Low_complexity 1 31 0 715 273 59 78 chr3 96499577 96499788 -121537370 + MLT1E3 LTR MaLR 1 203 -421 1628 189 23 7 chr3 96499788 96500090 -121537068 + AluSx SINE Alu 1 307 -5 715 273 59 78 chr3 96500090 96500252 -121536906 + MLT1E3 LTR MaLR 203 367 -257 1336 212 57 17 chr3 96500260 96500370 -121536788 + L1MA4A LINE L1 5912 6016 -287 1884 133 78 26 chr3 96500370 96500716 -121536442 + THE1B LTR MaLR 1 364 0 1336 212 57 17 chr3 96500716 96500954 -121536204 + L1MA4A LINE L1 6016 6274 -29 33 29 0 0 chr3 96500968 96501003 -121536155 + AT_rich Low_complexity Low_complexity 1 35 0 4583 182 61 10 chr3 96501663 96502706 -121534452 - L1MA8 LINE L1 0 6291 5191 10819 213 33 36 chr3 96502708 96503421 -121533737 + L1 LINE L1 2201 2915 -3231 20085 62 1 6 chr3 96503421 96506828 -121530330 + L1PA5 LINE L1 2736 6146 -8 10819 213 33 36 chr3 96506828 96506853 -121530305 + L1 LINE L1 2915 2939 -3207 1985 96 52 0 chr3 96506853 96507124 -121530034 + AluSp SINE Alu 3 287 -26 10819 213 33 36 chr3 96507124 96509383 -121527775 + L1 LINE L1 2939 5190 -956 294 214 0 0 chr3 96509606 96509690 -121527468 + GA-rich Low_complexity Low_complexity 1 84 0 23 0 0 0 chr3 96510334 96510357 -121526801 + AT_rich Low_complexity Low_complexity 1 23 0 1693 210 75 27 chr3 96510831 96511274 -121525884 - MLT1C LTR MaLR -2 465 2 205 167 9 176 chr3 96512291 96512399 -121524759 + L2 LINE L2 2212 2301 -1013 193 363 79 38 chr3 96512400 96512695 -121524463 + L2 LINE L2 2432 2744 -570 3092 19 14 0 chr3 96512695 96513059 -121524099 - L1PA4 LINE L1 -2 6153 5785 193 363 79 38 chr3 96513059 96513105 -121524053 + L2 LINE L2 2744 2787 -527 2017 110 7 36 chr3 96513127 96513436 -121523722 + AluSq SINE Alu 1 300 -13 1917 214 69 12 chr3 96513468 96514129 -121523029 - L1MC/D LINE L1 -872 5274 4712 381 356 61 49 chr3 96514131 96514545 -121522613 + L2 LINE L2 2618 3043 -229 3353 146 36 35 chr3 96514596 96515097 -121522061 - Tigger3(Golem) DNA MER2_type 0 3028 2524 1812 147 0 13 chr3 96515097 96515397 -121521761 - AluSx SINE Alu -16 296 1 3353 146 36 35 chr3 96515397 96515581 -121521577 - Tigger3(Golem) DNA MER2_type -504 2524 2342 648 231 45 0 chr3 96515582 96515716 -121521442 - Tigger3(Golem) DNA MER2_type -2888 141 2 459 296 216 8 chr3 96515987 96516301 -121520857 + L2 LINE L2 2701 3074 -239 30 59 0 0 chr3 96516657 96516708 -121520450 + AT_rich Low_complexity Low_complexity 1 51 0 555 140 17 45 chr3 96518416 96518594 -121518564 + GA-rich Low_complexity Low_complexity 1 173 0 224 735 0 0 chr3 96518707 96518843 -121518315 + (TG)n Simple_repeat Simple_repeat 2 137 0 4108 270 116 9 chr3 96519698 96520834 -121516324 + L1PA13 LINE L1 1 1258 -5529 15596 204 22 58 chr3 96520837 96526512 -121510646 + L1PA13 LINE L1 1396 6814 0 321 26 0 0 chr3 96527267 96527305 -121509853 + (TG)n Simple_repeat Simple_repeat 1 38 0 1938 128 7 4 chr3 96527305 96527579 -121509579 - AluSx SINE Alu -33 279 5 555 300 75 73 chr3 96527786 96528239 -121508919 - LTR16A1 LTR ERVL -3 454 1 219 217 0 0 chr3 96529391 96529451 -121507707 + (TA)n Simple_repeat Simple_repeat 1 60 0 258 310 142 9 chr3 96530155 96530268 -121506890 - MIR SINE MIR -70 192 65 572 236 50 6 chr3 96530371 96530532 -121506626 - MIR SINE MIR -24 238 71 2330 49 0 7 chr3 96530535 96530849 -121506309 - AluY SINE Alu 0 312 1 228 273 0 0 chr3 96532213 96532268 -121504890 + (TA)n Simple_repeat Simple_repeat 2 56 0 311 143 31 26 chr3 96532536 96532614 -121504544 - L1MA5A LINE L1 -23 6280 6190 * 900 190 20 45 chr3 96532612 96532704 -121504454 - L1MA4A LINE L1 -181 6122 6029 3189 167 6 8 chr3 96532704 96533230 -121503928 - MER1A DNA MER1_type 0 527 3 900 190 20 45 chr3 96533230 96533384 -121503774 - L1MA4A LINE L1 -274 6029 5882 2637 137 7 31 chr3 96533561 96533957 -121503201 + MER57B LTR ERV1 1 387 -47 2266 69 0 21 chr3 96533957 96534274 -121502884 - AluY SINE Alu 0 311 1 2637 137 7 31 chr3 96534274 96534321 -121502837 + MER57B LTR ERV1 387 434 0 2107 150 30 0 chr3 96534321 96534654 -121502504 + MER57B-int LTR ERV1 1 343 -7194 192 40 0 0 chr3 96534772 96534797 -121502361 + (TTA)n Simple_repeat Simple_repeat 1 25 0 1939 42 0 0 chr3 96534800 96535036 -121502122 - L1PA4 LINE L1 -16 6139 5904 381 309 73 73 chr3 96535300 96535614 -121501544 + L1M4 LINE L1 4720 5033 -1113 246 304 40 0 chr3 96535707 96535832 -121501326 + L1M4 LINE L1 5060 5189 -957 207 0 0 0 chr3 96535978 96536001 -121501157 + (TA)n Simple_repeat Simple_repeat 1 23 0 289 139 38 38 chr3 96536018 96536097 -121501061 + L1MCa LINE L1 2006 2084 -4342 1189 286 30 9 chr3 96536199 96536528 -121500630 + MER70B LTR ERVL 110 445 -133 709 166 0 11 chr3 96536564 96536719 -121500439 - L1M3d LINE L1 -4631 1672 1119 2715 193 40 25 chr3 96536888 96537021 -121500137 - L1M3d LINE L1 -5267 1117 987 2165 78 14 0 chr3 96537021 96537302 -121499856 - AluY SINE Alu -26 285 1 2715 193 40 25 chr3 96537302 96537836 -121499322 - L1M3d LINE L1 -5397 987 440 1576 92 13 0 chr3 96537940 96538178 -121498980 - HUERS-P1 LTR ERV1 -1828 4435 4195 * 24115 112 20 25 chr3 96538173 96540301 -121496857 - HUERS-P1 LTR ERV1 -2519 3744 1640 1963 129 11 3 chr3 96540301 96540587 -121496571 - AluSq SINE Alu -25 288 1 24115 112 20 25 chr3 96540587 96542220 -121494938 - HUERS-P1 LTR ERV1 -4623 1640 1 4853 103 18 3 chr3 96542220 96542901 -121494257 - LTR8 LTR ERV1 0 691 1 23 54 0 0 chr3 96542940 96542977 -121494181 + AT_rich Low_complexity Low_complexity 1 37 0 1466 219 81 65 chr3 96544029 96544572 -121492586 + MER34B LTR ERV1 11 562 -3 220 315 40 54 chr3 96544576 96544725 -121492433 + MIR SINE MIR 70 216 -46 27 29 0 0 chr3 96544889 96544923 -121492235 + AT_rich Low_complexity Low_complexity 1 34 0 284 319 83 32 chr3 96545302 96545459 -121491699 + MIR3 SINE MIR 40 204 -4 216 216 0 0 chr3 96546311 96546362 -121490796 + (CA)n Simple_repeat Simple_repeat 2 52 0 25 31 0 0 chr3 96546489 96546521 -121490637 + AT_rich Low_complexity Low_complexity 1 32 0 882 140 0 7 chr3 96547603 96547739 -121489419 + AluSq/x SINE Alu 3 137 -176 7800 131 37 1 chr3 96547850 96549029 -121488129 + MER57B-int LTR ERV1 5925 7146 -391 626 160 15 30 chr3 96549029 96549160 -121487998 + LTR54B LTR ERV1 3 131 -367 1466 87 135 0 chr3 96549160 96549390 -121487768 + MER57B-int LTR ERV1 7277 7537 0 2586 154 14 0 chr3 96549393 96549821 -121487337 + MER57B LTR ERV1 1 434 0 664 181 7 7 chr3 96550124 96550262 -121486896 + L1PA16 LINE L1 6028 6165 -1 182 268 77 108 chr3 96550634 96550828 -121486330 + L2 LINE L2 3121 3308 -5 198 0 0 0 chr3 96551028 96551050 -121486108 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 4701 131 51 0 chr3 96551053 96551837 -121485321 - L1PB2 LINE L1 -13 6138 5315 219 166 32 16 chr3 96551863 96551997 -121485161 + (TA)n Simple_repeat Simple_repeat 1 136 0 1399 218 47 0 chr3 96551999 96552274 -121484884 - AluJo SINE Alu -23 289 2 21 57 0 0 chr3 96552374 96552409 -121484749 + AT_rich Low_complexity Low_complexity 1 35 0 571 281 70 70 chr3 96553353 96553770 -121483388 + L2 LINE L2 2022 2438 -876 5004 213 25 16 chr3 96553812 96555379 -121481779 - L1MC1 LINE L1 0 6333 4751 275 203 14 0 chr3 96555603 96555672 -121481486 + GA-rich Low_complexity Low_complexity 2 71 0 641 350 103 18 chr3 96556027 96556843 -121480315 - L2 LINE L2 -6 3307 2425 208 367 22 0 chr3 96556945 96557035 -121480123 + MIR SINE MIR 171 262 0 24 0 0 0 chr3 96558094 96558118 -121479040 + AT_rich Low_complexity Low_complexity 1 24 0 2119 228 55 16 chr3 96558339 96558900 -121478258 - L1MD2 LINE L1 0 6359 5777 697 238 44 93 chr3 96559051 96559438 -121477720 - L1ME3A LINE L1 0 6170 5803 1076 288 62 81 chr3 96559453 96560959 -121476199 - L1ME3A LINE L1 -1326 4820 3344 654 271 52 80 chr3 96562685 96562857 -121474301 + MLT1E LTR MaLR 5 164 -429 1891 153 0 35 chr3 96562857 96563171 -121473987 + AluJb SINE Alu 2 304 -8 654 271 52 80 chr3 96563171 96563345 -121473813 + MLT1E LTR MaLR 164 341 -252 6522 31 0 9 chr3 96563361 96564138 -121473020 - L1PA3 LINE L1 0 6155 5386 589 277 38 42 chr3 96564166 96564379 -121472779 + MLT1E LTR MaLR 377 588 -5 202 26 51 51 chr3 96564512 96564551 -121472607 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1250 97 49 0 chr3 96564869 96565054 -121472104 - MER51B LTR ERV1 0 377 184 491 145 96 0 chr3 96565053 96565136 -121472022 - MER51A LTR ERV1 -102 532 442 * 1420 141 35 67 chr3 96565135 96565419 -121471739 - MER51B LTR ERV1 -102 275 1 2257 148 0 3 chr3 96565419 96565764 -121471394 - MER51B-int LTR ERV1 0 7816 7473 522 200 52 37 chr3 96565765 96565900 -121471258 - LTR54B LTR ERV1 -357 141 5 3721 117 52 2 chr3 96565900 96566463 -121470695 - MER51B-int LTR ERV1 -387 7150 6560 895 81 32 0 chr3 96566461 96566584 -121470574 - MER51B-int LTR ERV1 -1599 5938 5812 * 1041 102 18 0 chr3 96566583 96566749 -121470409 - MER51B-int LTR ERV1 -5154 2662 2494 939 178 0 30 chr3 96566748 96566945 -121470213 - MER51B-int LTR ERV1 -7134 986 796 * 1444 120 0 5 chr3 96566983 96567199 -121469959 - AluY SINE Alu 0 311 97 5785 172 19 31 chr3 96567199 96568309 -121468849 - MER51B-int LTR ERV1 -6720 1096 1 2303 112 10 48 chr3 96568309 96568701 -121468457 - MER51B LTR ERV1 0 377 1 576 157 0 29 chr3 96568939 96569041 -121468117 - MLT1A2 LTR MaLR -13 361 263 437 278 32 0 chr3 96569081 96569207 -121467951 - MLT1A2 LTR MaLR -233 141 12 1960 186 33 65 chr3 96569259 96569802 -121467356 - L1MA9 LINE L1 -5 6307 5782 856 276 85 39 chr3 96569864 96570298 -121466860 + MSTB2 LTR MaLR 1 454 -3 254 292 14 0 chr3 96570608 96570680 -121466478 + Tigger7 DNA MER2_type 155 227 -478 449 190 20 60 chr3 96570690 96570790 -121466368 + Tigger7 DNA MER2_type 2388 2483 -8 8077 203 19 13 chr3 96570838 96571504 -121465654 + L1MA8 LINE L1 3363 4023 -2268 7385 21 0 58 chr3 96571504 96572838 -121464320 + L1PA3 LINE L1 4872 6154 -1 8077 203 19 13 chr3 96572838 96574637 -121462521 + L1MA8 LINE L1 4023 5848 -443 6837 63 8 8 chr3 96574682 96575674 -121461484 - L1PA7 LINE L1 -2 6152 5158 634 236 13 0 chr3 96576507 96576686 -121460472 + L1 LINE L1 4189 4369 -1777 1474 177 15 0 chr3 96576691 96576962 -121460196 + L1PA16 LINE L1 5883 6157 -9 310 244 58 0 chr3 96576972 96577058 -121460100 - L1MC4a LINE L1 -1105 6703 6613 940 117 0 7 chr3 96577331 96577476 -121459682 + AluSg/x SINE Alu 167 310 -2 1878 128 62 0 chr3 96578378 96578666 -121458492 + AluSp SINE Alu 1 306 -7 701 148 8 31 chr3 96580011 96580139 -121457019 - FLAM_C SINE Alu -8 125 1 425 213 12 0 chr3 96580491 96580571 -121456587 - Tigger7 DNA MER2_type 0 2491 2411 278 196 0 18 chr3 96580573 96580629 -121456529 + Tigger5 DNA MER2_type 1 55 -2268 265 235 0 118 chr3 96580639 96580724 -121456434 + Tigger5 DNA MER2_type 2246 2320 -3 756 106 131 50 chr3 96580727 96580887 -121456271 - Tigger7 DNA MER2_type -81 2410 2238 * 1029 196 6 0 chr3 96580886 96581065 -121456093 - Tigger7 DNA MER2_type -2231 256 77 29 0 0 0 chr3 96581255 96581284 -121455874 + AT_rich Low_complexity Low_complexity 1 29 0 1519 123 0 14 chr3 96581667 96581887 -121455271 - AluSq SINE Alu -96 217 1 25 83 0 0 chr3 96582029 96582089 -121455069 + AT_rich Low_complexity Low_complexity 1 60 0 351 0 0 0 chr3 96583196 96583235 -121453923 + (CA)n Simple_repeat Simple_repeat 2 40 0 835 328 45 12 chr3 96583253 96583671 -121453487 + L1MEc LINE L1 130 561 -5835 * 1605 281 66 24 chr3 96583652 96584534 -121452624 + L1M4 LINE L1 3287 4205 -1941 1750 94 12 0 chr3 96584656 96584901 -121452257 - L1P LINE L1 -5885 261 14 * 21994 64 6 1 chr3 96584895 96587734 -121449424 + L1P LINE L1 226 3079 -3067 1085 121 8 7 chr3 96687734 96688552 -121348606 + HSATII Satellite Satellite 1 818 -102 524 101 0 30 chr3 96688590 96688689 -121348469 + HSATII Satellite Satellite 48 143 -27 820 129 6 18 chr3 96688716 96688887 -121348271 + HSATII Satellite Satellite 1 169 -1 895 140 13 8 chr3 96688995 96689981 -121347177 + HSATII Satellite Satellite 1 991 0 941 108 14 29 chr3 96690004 96690648 -121346510 + HSATII Satellite Satellite 1 634 -3 1161 125 11 11 chr3 96690682 96691644 -121345514 + HSATII Satellite Satellite 1 961 -14 827 127 13 0 chr3 96691674 96691832 -121345326 + HSATII Satellite Satellite 1 160 -10 1142 117 8 4 chr3 96691868 96692693 -121344465 + HSATII Satellite Satellite 1 828 -7 983 141 7 7 chr3 96692715 96693149 -121344009 + HSATII Satellite Satellite 1 434 0 998 115 14 9 chr3 96693176 96694664 -121342494 + HSATII Satellite Satellite 1 1495 0 822 124 23 11 chr3 96694714 96694973 -121342185 + HSATII Satellite Satellite 1 262 -54 478 182 39 0 chr3 96695073 96695227 -121341931 + HSATII Satellite Satellite 11 170 0 908 101 19 0 chr3 96695252 96695410 -121341748 + HSATII Satellite Satellite 3 163 -7 1086 127 4 10 chr3 96695439 96696380 -121340778 + HSATII Satellite Satellite 1 935 0 854 133 18 0 chr3 96696407 96696573 -121340585 + HSATII Satellite Satellite 2 170 0 1004 102 5 13 chr3 96696704 96696931 -121340227 + HSATII Satellite Satellite 1 225 0 1089 117 8 10 chr3 96696958 96697781 -121339377 + HSATII Satellite Satellite 1 821 -8 980 119 4 15 chr3 96697812 96698859 -121338299 + HSATII Satellite Satellite 1 1035 -2 958 129 15 10 chr3 96698988 96699648 -121337510 + HSATII Satellite Satellite 1 663 0 1077 115 9 18 chr3 96699672 96701429 -121335729 + HSATII Satellite Satellite 1 1740 -14 695 167 37 12 chr3 96701459 96701705 -121335453 + HSATII Satellite Satellite 1 252 -68 996 115 15 21 chr3 96701805 96702434 -121334724 + HSATII Satellite Satellite 1 625 -8 961 119 4 21 chr3 96702469 96703265 -121333893 + HSATII Satellite Satellite 1 782 -4 930 123 11 17 chr3 96703281 96703715 -121333443 + HSATII Satellite Satellite 1 431 0 929 142 11 0 chr3 96703741 96704517 -121332641 + HSATII Satellite Satellite 1 784 -19 4792 144 46 16 chr3 96704617 96705550 -121331608 + L1M1 LINE L1 2614 3574 -3991 275 201 0 32 chr3 96705553 96705707 -121331451 + (TAA)n Simple_repeat Simple_repeat 1 149 0 399 231 0 0 chr3 96705715 96705875 -121331283 + (TTA)n Simple_repeat Simple_repeat 1 160 0 11548 215 24 7 chr3 96705876 96708596 -121328562 + L1M1 LINE L1 3536 6302 -1263 30 27 0 0 chr3 96709163 96709200 -121327958 + AT_rich Low_complexity Low_complexity 1 37 0 215 306 148 19 chr3 96709914 96710022 -121327136 + L2 LINE L2 3176 3297 -16 433 288 102 17 chr3 96710030 96710207 -121326951 - L2 LINE L2 0 3313 3122 552 227 22 61 chr3 96710320 96710564 -121326594 + MER41B LTR ERV1 55 427 -208 228 212 24 12 chr3 96711019 96711184 -121325974 + (TA)n Simple_repeat Simple_repeat 2 168 0 264 345 60 0 chr3 96712869 96712985 -121324173 - L2 LINE L2 0 3313 3191 183 80 0 0 chr3 96713086 96713111 -121324047 + (CA)n Simple_repeat Simple_repeat 2 26 0 227 282 24 24 chr3 96714932 96715017 -121322141 + LTR16C LTR ERVL 405 489 -2 315 85 0 0 chr3 96715083 96715130 -121322028 + (GA)n Simple_repeat Simple_repeat 2 48 0 948 222 73 17 chr3 96715482 96715784 -121321374 + MER33 DNA MER1_type 1 319 -5 242 325 13 0 chr3 96717182 96717259 -121319899 - MER69 DNA AcHobo -2440 86 9 793 174 23 6 chr3 96717264 96717436 -121319722 + MER53 DNA DNA 2 176 -13 425 289 119 54 chr3 96717574 96717851 -121319307 + LTR40a LTR ERVL 14 308 -211 210 150 0 0 chr3 96717971 96718011 -121319147 + (CA)n Simple_repeat Simple_repeat 2 41 0 26 0 0 0 chr3 96720023 96720049 -121317109 + AT_rich Low_complexity Low_complexity 1 26 0 266 213 0 0 chr3 96721309 96721370 -121315788 - LTR66 LTR ERVL -156 454 394 242 313 76 7 chr3 96721891 96722035 -121315123 + L1MC/D LINE L1 3758 3911 -2235 496 314 74 94 chr3 96722875 96722990 -121314168 + L1MC/D LINE L1 4388 4504 -1642 189 0 0 0 chr3 96722990 96723011 -121314147 + (CA)n Simple_repeat Simple_repeat 2 22 0 496 314 74 94 chr3 96723011 96723626 -121313532 + L1MC/D LINE L1 4504 5103 -1043 670 304 38 30 chr3 96723764 96724133 -121313025 + L1MC/D LINE L1 5317 5688 -2120 23 0 0 0 chr3 96725238 96725261 -121311897 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr3 96725525 96725552 -121311606 + AT_rich Low_complexity Low_complexity 1 27 0 346 274 24 57 chr3 96726098 96726222 -121310936 - MER94 DNA DNA -5 129 10 427 217 0 0 chr3 96726826 96726932 -121310226 + MER53 DNA DNA 72 177 -12 196 374 61 0 chr3 96727434 96727533 -121309625 - L2 LINE L2 -827 2487 2383 347 306 41 48 chr3 96727836 96727983 -121309175 - MIR SINE MIR -86 176 31 40 83 0 0 chr3 96727997 96728093 -121309065 + AT_rich Low_complexity Low_complexity 1 96 0 230 197 26 26 chr3 96728258 96728334 -121308824 + A-rich Low_complexity Low_complexity 4 79 0 241 274 0 14 chr3 96728443 96728516 -121308642 - MER94 DNA DNA -3 131 60 242 311 66 71 chr3 96728841 96729037 -121308121 - MIR SINE MIR -28 234 40 1674 257 105 16 chr3 96729304 96729990 -121307168 + MER20B DNA MER1_type 18 764 -19 533 342 115 12 chr3 96730336 96730666 -121306492 + LTR16A LTR ERVL 87 450 0 234 128 0 0 chr3 96730717 96730756 -121306402 + (TAGA)n Simple_repeat Simple_repeat 1 39 0 212 372 54 7 chr3 96730773 96730921 -121306237 - MIR3 SINE MIR -35 173 19 23 54 0 0 chr3 96731257 96731294 -121305864 + AT_rich Low_complexity Low_complexity 1 37 0 22 80 0 0 chr3 96732019 96732069 -121305089 + AT_rich Low_complexity Low_complexity 1 50 0 308 336 13 27 chr3 96732399 96732548 -121304610 - MLT1K LTR MaLR -30 558 412 4709 182 22 23 chr3 96733034 96733952 -121303206 - L1PA14 LINE L1 -13 6148 5231 1733 157 157 16 chr3 96733952 96734327 -121302831 + MSTA LTR MaLR 1 428 0 7466 186 35 37 chr3 96734329 96735910 -121301248 + MSTA-int LTR MaLR 3 1580 0 1661 174 135 29 chr3 96735911 96736297 -121300861 + MSTA LTR MaLR 2 428 0 4709 182 22 23 chr3 96736297 96737125 -121300033 - L1PA14 LINE L1 -930 5231 4432 1875 197 0 3 chr3 96737135 96737515 -121299643 + L1P LINE L1 2200 2578 -3568 3630 161 22 6 chr3 96737516 96738201 -121298957 + L1P LINE L1 3703 4398 -1748 25 65 0 0 chr3 96739120 96739166 -121297992 + AT_rich Low_complexity Low_complexity 1 46 0 1307 224 27 3 chr3 96740137 96740431 -121296727 - AluJb SINE Alu -11 301 1 193 347 0 27 chr3 96741630 96741705 -121295453 + MIR SINE MIR 82 154 -108 816 193 15 86 chr3 96742038 96742235 -121294923 + LOR1-int LTR ERV1 46 228 -7892 672 130 53 15 chr3 96742248 96742379 -121294779 + L1M1 LINE L1 13 148 -7417 * 6045 223 17 37 chr3 96742362 96743671 -121293487 + L1M1 LINE L1 1109 2390 -5175 2170 131 0 3 chr3 96743671 96743984 -121293174 + AluSx SINE Alu 1 312 0 6045 223 17 37 chr3 96743984 96744077 -121293081 + L1M1 LINE L1 2390 2483 -5082 1797 209 41 5 chr3 96744178 96744589 -121292569 - L1 LINE L1 -2186 3960 3535 496 158 11 21 chr3 96744593 96744688 -121292470 + L1PB4 LINE L1 6056 6149 -7 635 165 8 0 chr3 96745272 96745393 -121291765 - AluSg/x SINE Alu -8 304 183 30266 118 11 65 chr3 96745716 96748422 -121288736 - L1PA7 LINE L1 -13 6141 3291 2471 52 7 3 chr3 96748422 96748730 -121288428 - AluY SINE Alu -2 309 1 30266 118 11 65 chr3 96748730 96752521 -121284637 - L1PA7 LINE L1 -2863 3291 9 22 56 0 0 chr3 96752524 96752560 -121284598 + AT_rich Low_complexity Low_complexity 1 36 0 33 25 0 0 chr3 96752830 96752870 -121284288 + AT_rich Low_complexity Low_complexity 1 40 0 654 323 108 11 chr3 96752987 96753340 -121283818 + LTR16C LTR ERVL 80 466 -25 2049 196 62 2 chr3 96753650 96754054 -121283104 - MSTA LTR MaLR 0 428 1 695 258 19 43 chr3 96754171 96754427 -121282731 + L1M4 LINE L1 11 260 -6282 1043 268 77 20 chr3 96754618 96754717 -121282441 + L1M4 LINE L1 679 771 -5771 324 0 0 0 chr3 96754717 96754753 -121282405 + (CA)n Simple_repeat Simple_repeat 2 37 0 1043 268 77 20 chr3 96754753 96755056 -121282102 + L1M4 LINE L1 771 1104 -5438 5599 261 50 43 chr3 96755092 96757266 -121279892 + L1M4 LINE L1 2424 4583 -2061 5645 118 16 15 chr3 96757266 96758493 -121278665 + L1PA11 LINE L1 4942 6168 -6 5599 261 50 43 chr3 96758493 96758852 -121278306 + L1M4 LINE L1 4583 4970 -1674 2074 76 8 4 chr3 96758852 96759116 -121278042 - AluY SINE Alu -14 297 33 5599 261 50 43 chr3 96759116 96759419 -121277739 + L1M4 LINE L1 4970 5270 -1374 1332 213 30 12 chr3 96759551 96759884 -121277274 + L1MA3 LINE L1 5967 6305 0 332 284 30 0 chr3 96761289 96761423 -121275735 + (TA)n Simple_repeat Simple_repeat 2 139 0 807 79 95 32 chr3 96761799 96761925 -121275233 + MLT2A2 LTR ERVL 1 134 -319 32 0 0 0 chr3 96761940 96761972 -121275186 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr3 96762288 96762317 -121274841 + AT_rich Low_complexity Low_complexity 1 29 0 25 65 0 0 chr3 96765023 96765069 -121272089 + AT_rich Low_complexity Low_complexity 1 46 0 300 27 0 0 chr3 96766875 96766912 -121270246 + (TG)n Simple_repeat Simple_repeat 2 38 0 1940 119 7 10 chr3 96767019 96767322 -121269836 - AluSq SINE Alu -11 302 1 21 0 0 0 chr3 96767693 96767714 -121269444 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr3 96768728 96768756 -121268402 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr3 96769314 96769346 -121267812 + AT_rich Low_complexity Low_complexity 1 32 0 374 290 36 22 chr3 96769378 96769516 -121267642 + L2 LINE L2 3171 3310 -3 248 330 0 33 chr3 96769771 96769946 -121267212 + A-rich Low_complexity Low_complexity 5 290 0 252 316 108 43 chr3 96771023 96771254 -121265904 + LTR33 LTR ERVL 205 450 -71 249 319 34 44 chr3 96771960 96772090 -121265068 + MIR SINE MIR 31 158 -60 35 54 0 0 chr3 96772344 96772400 -121264758 + AT_rich Low_complexity Low_complexity 1 56 0 232 246 70 63 chr3 96773220 96773362 -121263796 - L1ME1 LINE L1 -166 6000 5907 7077 216 24 4 chr3 96773385 96775111 -121262047 + ERVL-B1 LTR ERVL 3161 4993 -534 2264 171 32 70 chr3 96775108 96775664 -121261494 + ERVL-B1 LTR ERVL 5223 5757 -7 * 1477 215 96 78 chr3 96775664 96776092 -121261066 + MLT2B1 LTR ERVL 1 420 -100 2337 45 0 0 chr3 96776092 96776384 -121260774 - L1PA4 LINE L1 -2 6153 5862 1477 215 96 78 chr3 96776384 96776422 -121260736 + MLT2B1 LTR ERVL 420 456 -64 557 38 57 9 chr3 96776422 96776528 -121260630 + (CA)n Simple_repeat Simple_repeat 2 112 0 1477 215 96 78 chr3 96776528 96776571 -121260587 + MLT2B1 LTR ERVL 456 520 0 929 267 84 6 chr3 96776573 96776917 -121260241 - L1ME1 LINE L1 -263 5903 5533 679 282 58 88 chr3 96776934 96777402 -121259756 - L1MEc LINE L1 -5715 681 228 480 300 62 31 chr3 96777804 96777964 -121259194 + MER5B DNA MER1_type 14 178 0 180 0 0 0 chr3 96778386 96778406 -121258752 + (T)n Simple_repeat Simple_repeat 1 20 0 24 32 0 0 chr3 96779693 96779724 -121257434 + AT_rich Low_complexity Low_complexity 1 31 0 330 26 0 0 chr3 96780485 96780524 -121256634 + (CA)n Simple_repeat Simple_repeat 1 39 0 231 331 16 25 chr3 96781213 96781334 -121255824 + L1 LINE L1 4072 4191 -1955 238 209 154 11 chr3 96781704 96781795 -121255363 - Charlie4 DNA MER1_type -39 1922 1819 198 0 0 0 chr3 96781949 96781971 -121255187 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 565 310 30 10 chr3 96781990 96782287 -121254871 + L1ME2 LINE L1 2273 2575 -3571 860 287 117 31 chr3 96782299 96782943 -121254215 + L1ME2 LINE L1 5297 5995 -169 2121 111 0 3 chr3 96785566 96785864 -121251294 - AluSx SINE Alu -15 297 1 22 35 0 0 chr3 96785985 96786014 -121251144 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr3 96786161 96786186 -121250972 + AT_rich Low_complexity Low_complexity 1 25 0 2160 112 0 10 chr3 96786471 96786785 -121250373 + AluSq SINE Alu 1 311 -2 1765 117 35 0 chr3 96786788 96786914 -121250244 + AluSx SINE Alu 1 121 -191 315 0 0 0 chr3 96786914 96786949 -121250209 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 1765 117 35 0 chr3 96786949 96787105 -121250053 + AluSx SINE Alu 121 293 -19 614 0 0 0 chr3 96787107 96787180 -121249978 + L1PA2 LINE L1 6078 6150 -5 265 89 0 36 chr3 96787252 96787308 -121249850 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 1315 241 79 89 chr3 96787338 96787898 -121249260 - MLT2B3 LTR ERVL 0 554 1 1281 237 47 55 chr3 96788583 96788962 -121248196 + L1M1 LINE L1 4943 5330 -937 1576 186 7 24 chr3 96788962 96789252 -121247906 + AluJo SINE Alu 1 285 -27 1281 237 47 55 chr3 96789252 96789446 -121247712 + L1M1 LINE L1 5330 5524 -743 214 196 18 36 chr3 96789446 96789502 -121247656 + GA-rich Low_complexity Low_complexity 2 56 0 2789 224 28 9 chr3 96789502 96790172 -121246986 + L1MB5 LINE L1 5479 6161 -13 24 53 0 0 chr3 96790176 96790214 -121246944 + AT_rich Low_complexity Low_complexity 1 38 0 21 57 0 0 chr3 96790471 96790506 -121246652 + AT_rich Low_complexity Low_complexity 1 35 0 814 201 27 0 chr3 96790582 96790731 -121246427 - AluJb SINE Alu -19 293 141 707 358 100 14 chr3 96790734 96791324 -121245834 + MERVL LTR ERVL 2536 3176 -2309 387 256 18 4 chr3 96792198 96792318 -121244840 + MLT1H LTR MaLR 416 549 0 446 286 77 75 chr3 96793519 96793868 -121243290 + LTR16A1 LTR ERVL 3 352 -105 * 709 256 12 0 chr3 96793866 96794030 -121243128 - MER58A DNA MER1_type -20 204 39 23 54 0 0 chr3 96794273 96794310 -121242848 + AT_rich Low_complexity Low_complexity 1 37 0 198 208 0 0 chr3 96795021 96795074 -121242084 + (TA)n Simple_repeat Simple_repeat 2 54 0 324 353 27 13 chr3 96795133 96795283 -121241875 + MIR SINE MIR 11 162 -100 24 32 0 0 chr3 96795323 96795354 -121241804 + AT_rich Low_complexity Low_complexity 1 31 0 217 279 0 0 chr3 96795801 96795862 -121241296 + GA-rich Low_complexity Low_complexity 2 62 0 267 284 107 22 chr3 96796077 96796302 -121240856 + L1ME LINE L1 5538 5781 -340 22 56 0 0 chr3 96797265 96797301 -121239857 + AT_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chr3 96799122 96799157 -121238001 + AT_rich Low_complexity Low_complexity 1 35 0 431 344 42 16 chr3 96799524 96799716 -121237442 - MIR SINE MIR -55 207 11 279 0 0 0 chr3 96802687 96802718 -121234440 + (TC)n Simple_repeat Simple_repeat 2 32 0 * 396 40 0 0 chr3 96802717 96802767 -121234391 + (TG)n Simple_repeat Simple_repeat 1 50 0 1887 134 0 0 chr3 96803168 96803436 -121233722 - AluSg SINE Alu -30 280 13 519 17 0 0 chr3 96803540 96803600 -121233558 + (CA)n Simple_repeat Simple_repeat 1 60 0 23 54 0 0 chr3 96803938 96803975 -121233183 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr3 96804237 96804258 -121232900 + AT_rich Low_complexity Low_complexity 1 21 0 1291 221 43 3 chr3 96804298 96804614 -121232544 - L1PB4 LINE L1 -3 6153 5823 2680 190 46 18 chr3 96804768 96805639 -121231519 - L1PB4 LINE L1 -319 5837 4944 6791 61 18 0 chr3 96805697 96806022 -121231136 - L1PA7 LINE L1 -3 6151 5833 405 0 0 0 chr3 96806022 96806067 -121231091 + (TTTC)n Simple_repeat Simple_repeat 2 46 0 1844 105 4 8 chr3 96806067 96806324 -121230834 - AluSc SINE Alu -30 279 24 6791 61 18 0 chr3 96806324 96806972 -121230186 - L1PA7 LINE L1 -320 5834 5178 21 0 0 0 chr3 96807134 96807155 -121230003 + AT_rich Low_complexity Low_complexity 1 21 0 33 0 0 0 chr3 96807800 96807833 -121229325 + AT_rich Low_complexity Low_complexity 1 33 0 366 253 36 24 chr3 96809342 96809509 -121227649 - MLT1I LTR MaLR -10 418 266 196 269 90 30 chr3 96809739 96809806 -121227352 + MIR3 SINE MIR 138 208 0 489 305 69 23 chr3 96809966 96810140 -121227018 - MLT1I LTR MaLR -194 215 34 1402 118 5 0 chr3 96810190 96810394 -121226764 + AluSx SINE Alu 1 205 -107 26 64 0 0 chr3 96811422 96811469 -121225689 + AT_rich Low_complexity Low_complexity 1 47 0 23 54 0 0 chr3 96811710 96811747 -121225411 + AT_rich Low_complexity Low_complexity 1 37 0 547 269 15 8 chr3 96813726 96813860 -121223298 + Cheshire DNA MER1_type 268 402 -2018 628 177 6 104 chr3 96813862 96814026 -121223132 + MSTB LTR MaLR 3 150 -276 342 264 37 18 chr3 96814095 96814258 -121222900 + L1MCc LINE L1 1371 1536 -4887 * 662 282 42 72 chr3 96814255 96814940 -121222218 + L1MCc LINE L1 2426 3090 -4032 1191 286 33 10 chr3 96814942 96815334 -121221824 + Cheshire DNA MER1_type 2 402 -2018 1519 197 84 55 chr3 96815334 96815750 -121221408 + MSTB1 LTR MaLR 1 428 -4 3469 241 92 22 chr3 96815760 96816045 -121221113 + Cheshire DNA MER1_type 396 660 -1760 5358 39 2 0 chr3 96816045 96816720 -121220438 + L1PA5 LINE L1 5493 6168 0 3469 241 92 22 chr3 96816720 96817613 -121219545 + Cheshire DNA MER1_type 660 1658 -762 24 85 0 0 chr3 96817613 96817672 -121219486 + AT_rich Low_complexity Low_complexity 1 59 0 16384 47 2 1 chr3 96817843 96820670 -121216488 - L1PA5 LINE L1 -9 6145 3316 242 273 57 0 chr3 96820671 96820759 -121216399 + Cheshire DNA MER1_type 1651 1743 -677 411 276 128 17 chr3 96820763 96821115 -121216043 + L1MCc LINE L1 2773 3163 -3959 2021 238 48 22 chr3 96821116 96822102 -121215056 + L1MA9 LINE L1 4800 5793 -519 23 33 0 0 chr3 96822342 96822372 -121214786 + AT_rich Low_complexity Low_complexity 1 30 0 1982 173 36 118 chr3 96822411 96822970 -121214188 - MLT2B3 LTR ERVL 0 554 46 4294 72 48 3 chr3 96822970 96823552 -121213606 + LTR14B LTR ERVK 1 608 0 1982 173 36 118 chr3 96823552 96823595 -121213563 - MLT2B3 LTR ERVL -508 46 1 1168 245 75 40 chr3 96823600 96824081 -121213077 + L1MA9 LINE L1 5811 6308 -4 321 303 32 22 chr3 96824068 96824253 -121212905 + L1MCc LINE L1 3111 3297 -3644 * 1061 182 77 0 chr3 96824254 96824463 -121212695 + L1PB4 LINE L1 5932 6156 0 714 289 76 15 chr3 96824460 96824868 -121212290 + L1MCc LINE L1 3380 3812 -3129 * 328 192 14 0 chr3 96824876 96824949 -121212209 + L1MA7 LINE L1 6193 6266 -25 3746 231 15 14 chr3 96824997 96825777 -121211381 + L1MA4 LINE L1 3 783 -4545 1636 172 206 0 chr3 96825778 96826138 -121211020 + MER57B LTR ERV1 1 434 0 15304 168 37 11 chr3 96826156 96828975 -121208183 + MER57-int LTR ERV1 1883 7146 -391 610 141 31 31 chr3 96828976 96829104 -121208054 + LTR54B LTR ERV1 4 131 -367 1308 109 127 27 chr3 96829104 96829325 -121207833 + MER57-int LTR ERV1 7279 7521 -16 771 250 29 5 chr3 96829325 96829341 -121207817 + L1MA4 LINE L1 769 783 -4545 2878 127 5 0 chr3 96829341 96829773 -121207385 + MER57B LTR ERV1 1 434 0 771 250 29 5 chr3 96829773 96829960 -121207198 + L1MA4 LINE L1 783 977 -4351 392 241 0 0 chr3 96830002 96830085 -121207073 + L1 LINE L1 4080 4162 -1984 * 1428 170 9 8 chr3 96830078 96830452 -121206706 + L1MA4 LINE L1 967 1343 -4065 * 4827 199 41 24 chr3 96830441 96832563 -121204595 + L1MA4 LINE L1 4332 6481 -1 246 301 35 5 chr3 96832568 96832771 -121204387 + L1M3 LINE L1 3081 3289 -2857 1531 153 66 22 chr3 96832772 96833098 -121204060 + THE1C LTR MaLR 1 368 -7 774 317 10 13 chr3 96833200 96833591 -121203567 + L1M3 LINE L1 3388 3777 -2369 742 251 73 4 chr3 96833587 96833834 -121203324 + L1ME2 LINE L1 5726 5989 -175 * 35 24 0 0 chr3 96833977 96834019 -121203139 + AT_rich Low_complexity Low_complexity 1 42 0 285 29 0 0 chr3 96834400 96834434 -121202724 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 203 316 29 43 chr3 96835160 96835299 -121201859 - MIR SINE MIR -46 216 80 2899 20 0 0 chr3 96835601 96835945 -121201213 - L1PA3 LINE L1 -930 5216 4873 7506 29 5 0 chr3 96835945 96836890 -121200268 + L1PA3 LINE L1 5207 6155 0 22 0 0 0 chr3 96836915 96836937 -121200221 + AT_rich Low_complexity Low_complexity 1 22 0 379 351 41 0 chr3 96837628 96837799 -121199359 - L2 LINE L2 -905 2409 2232 21 36 0 0 chr3 96838449 96838477 -121198681 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr3 96838721 96838744 -121198414 + AT_rich Low_complexity Low_complexity 1 23 0 56 83 0 0 chr3 96838898 96839031 -121198127 + AT_rich Low_complexity Low_complexity 1 133 0 200 184 20 0 chr3 96839735 96839784 -121197374 + (CA)n Simple_repeat Simple_repeat 1 50 0 249 188 21 0 chr3 96840724 96840772 -121196386 + (CA)n Simple_repeat Simple_repeat 1 49 0 1186 251 71 27 chr3 96841264 96841338 -121195820 + L1MCc LINE L1 1035 1104 -5619 1966 162 0 0 chr3 96841338 96841646 -121195512 + AluSq SINE Alu 1 308 -5 1186 251 71 27 chr3 96841646 96842327 -121194831 + L1MCc LINE L1 1104 1823 -4900 * 6440 201 24 19 chr3 96842325 96844034 -121193124 + L1M3 LINE L1 3850 5568 -745 42 20 0 0 chr3 96844819 96844868 -121192290 + AT_rich Low_complexity Low_complexity 1 49 0 25 31 0 0 chr3 96848240 96848272 -121188886 + AT_rich Low_complexity Low_complexity 1 32 0 5115 80 6 1 chr3 96848888 96849579 -121187579 - L1PA7 LINE L1 -2 6152 5459 219 243 14 86 chr3 96849607 96849677 -121187481 - MIR SINE MIR -80 182 118 534 196 126 14 chr3 96851532 96851675 -121185483 - MLT1C LTR MaLR -303 164 6 23 33 0 0 chr3 96852213 96852243 -121184915 + AT_rich Low_complexity Low_complexity 1 30 0 421 200 169 6 chr3 96852243 96852403 -121184755 - L1MA8 LINE L1 -2 6289 6104 312 356 107 0 chr3 96852541 96852718 -121184440 + MIR SINE MIR 65 260 -2 4092 30 0 2 chr3 96853501 96853992 -121183166 + L1PA4 LINE L1 5663 6152 -3 305 316 71 26 chr3 96854442 96854597 -121182561 + MIR SINE MIR 45 206 -56 24 0 0 0 chr3 96854729 96854753 -121182405 + AT_rich Low_complexity Low_complexity 1 24 0 477 113 62 0 chr3 96855040 96855120 -121182038 - MER1B DNA MER1_type 0 333 249 1281 157 19 0 chr3 96855122 96855332 -121181826 - MER1B DNA MER1_type -77 220 7 194 0 39 0 chr3 96856324 96856350 -121180808 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1439 188 22 7 chr3 96856353 96856625 -121180533 - AluJb SINE Alu -36 276 1 325 309 110 49 chr3 96857880 96858126 -121179032 - MIR SINE MIR 0 262 2 379 244 205 34 chr3 96858570 96858804 -121178354 + MLT1F LTR MaLR 269 542 0 649 313 71 16 chr3 96858960 96859375 -121177783 + MLT1J2 LTR MaLR 4 396 -13 360 321 50 61 chr3 96859400 96859662 -121177496 + MLT1K LTR MaLR 96 354 -234 2446 181 96 16 chr3 96909682 96910244 -121126914 + MER11A LTR ERVK 660 1266 0 928 301 56 14 chr3 96910244 96910816 -121126342 + L1ME1 LINE L1 2887 3482 -2664 6897 62 9 0 chr3 96910822 96912038 -121125120 + L1PA7 LINE L1 4935 6153 -1 1689 271 44 54 chr3 96912039 96912270 -121124888 + L1ME1 LINE L1 5420 5652 -514 1956 196 39 7 chr3 96912270 96912683 -121124475 + MSTB LTR MaLR 1 426 0 1689 271 44 54 chr3 96912683 96913206 -121123952 + L1ME1 LINE L1 5652 6166 0 2188 185 28 0 chr3 96913500 96913933 -121123225 + L1MC2 LINE L1 5319 5763 -581 251 266 96 0 chr3 96914050 96914144 -121123014 - L1M4 LINE L1 -1587 4559 4457 206 280 109 83 chr3 96914235 96914428 -121122730 + L2 LINE L2 3114 3311 -2 2166 92 23 0 chr3 96914848 96915151 -121122007 + AluY SINE Alu 2 311 0 2164 177 43 15 chr3 96915870 96916143 -121121015 + L1MC2 LINE L1 5832 6125 -219 588 88 0 0 chr3 96916143 96916223 -121120935 + MADE1 DNA Mariner 1 80 0 2164 177 43 15 chr3 96916223 96916412 -121120746 + L1MC2 LINE L1 6125 6307 -37 201 158 0 0 chr3 96916844 96916882 -121120276 + A-rich Low_complexity Low_complexity 3 40 0 829 107 25 0 chr3 96917996 96918117 -121119041 - AluSp/q SINE Alu -17 296 173 728 91 9 0 chr3 96918137 96918247 -121118911 + (GA)n Simple_repeat Simple_repeat 2 112 0 14237 35 0 3 chr3 96918540 96920274 -121116884 - L1P LINE L1 -1057 5089 3361 225 159 0 0 chr3 96920476 96920520 -121116638 + CT-rich Low_complexity Low_complexity 1 44 0 485 327 28 47 chr3 96920527 96920557 -121116601 + L1MC5 LINE L1 6620 6649 -1180 1751 130 0 19 chr3 96920557 96920818 -121116340 + AluSg SINE Alu 36 291 -19 485 327 28 47 chr3 96920818 96921020 -121116138 + L1MC5 LINE L1 6649 6853 -976 24 91 0 0 chr3 96921404 96921470 -121115688 + AT_rich Low_complexity Low_complexity 1 66 0 1114 190 5 0 chr3 96922008 96922224 -121114934 - L1PB1 LINE L1 -5 6146 5930 3049 169 11 40 chr3 96922225 96922588 -121114570 + L1PB1 LINE L1 4932 5304 -847 222 37 0 0 chr3 96922588 96922615 -121114543 + (TAA)n Simple_repeat Simple_repeat 2 28 0 3049 169 11 40 chr3 96922615 96923137 -121114021 + L1PB1 LINE L1 5304 5788 -363 224 137 77 8 chr3 96923150 96923267 -121113891 + (TA)n Simple_repeat Simple_repeat 1 125 0 803 175 9 2 chr3 96923274 96923432 -121113726 + L1PB1 LINE L1 5782 5940 -240 2309 181 27 0 chr3 96923953 96924367 -121112791 + MSTB1 LTR MaLR 1 425 -7 34 65 0 0 chr3 96924765 96924827 -121112331 + AT_rich Low_complexity Low_complexity 1 62 0 37 76 0 0 chr3 96925084 96925163 -121111995 + AT_rich Low_complexity Low_complexity 1 79 0 208 346 51 0 chr3 96925822 96925900 -121111258 + MIR3 SINE MIR 110 191 -17 336 48 0 0 chr3 96926942 96926984 -121110174 + (TG)n Simple_repeat Simple_repeat 1 42 0 25 0 0 0 chr3 96928991 96929016 -121108142 + AT_rich Low_complexity Low_complexity 1 25 0 261 226 12 12 chr3 96930350 96930434 -121106724 - L1MA6 LINE L1 -7 6293 6210 260 228 104 63 chr3 96930549 96930660 -121106498 + MLT1H LTR MaLR 12 172 -377 * 662 367 47 3 chr3 96930654 96930992 -121106166 + LTR16A LTR ERVL 14 366 -84 657 285 73 16 chr3 96931046 96931411 -121105747 + MLT1H LTR MaLR 140 548 -1 369 0 0 0 chr3 96931501 96931542 -121105616 + (TG)n Simple_repeat Simple_repeat 2 42 0 198 171 0 0 chr3 96932062 96932103 -121105055 + (TG)n Simple_repeat Simple_repeat 2 42 0 442 217 59 0 chr3 96933737 96933847 -121103311 - MLT1C LTR MaLR -359 108 3 640 223 0 98 chr3 96934064 96934257 -121102901 + FAM SINE Alu 1 174 -1 26 0 0 0 chr3 96935056 96935082 -121102076 + AT_rich Low_complexity Low_complexity 1 26 0 1857 141 20 0 chr3 96936341 96936645 -121100513 + AluY SINE Alu 2 311 0 21 0 0 0 chr3 96939528 96939549 -121097609 + AT_rich Low_complexity Low_complexity 1 21 0 1191 169 60 80 chr3 96939597 96939899 -121097259 + AluJb SINE Alu 1 296 -6 186 103 0 0 chr3 96939904 96939933 -121097225 + (GA)n Simple_repeat Simple_repeat 2 30 0 21 57 0 0 chr3 96941255 96941290 -121095868 + AT_rich Low_complexity Low_complexity 1 35 0 351 0 0 0 chr3 96942552 96942591 -121094567 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr3 96942725 96942747 -121094411 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 96943117 96943139 -121094019 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr3 96943871 96943893 -121093265 + (CAG)n Simple_repeat Simple_repeat 2 23 0 2315 137 5 16 chr3 96943928 96944276 -121092882 + THE1C LTR MaLR 1 346 -29 4487 34 0 2 chr3 96944276 96944814 -121092344 - L1PA3 LINE L1 0 6155 5619 2315 137 5 16 chr3 96944814 96944844 -121092314 + THE1C LTR MaLR 346 375 0 8815 141 31 42 chr3 96944844 96946442 -121090716 + THE1C-int LTR MaLR 1 1580 0 2222 131 19 16 chr3 96946442 96946816 -121090342 + THE1C LTR MaLR 1 375 0 207 0 0 0 chr3 96946882 96946905 -121090253 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 52 58 0 0 chr3 96947071 96947158 -121090000 + AT_rich Low_complexity Low_complexity 1 87 0 9644 260 32 13 chr3 96948141 96951850 -121085308 - L1PA12 LINE L1 -1331 5517 1734 629 116 49 27 chr3 96951885 96952216 -121084942 + (TA)n Simple_repeat Simple_repeat 1 338 0 574 147 59 8 chr3 96952241 96952758 -121084400 + (TA)n Simple_repeat Simple_repeat 1 543 0 2219 87 0 3 chr3 96952758 96953047 -121084111 - AluY SINE Alu -23 288 1 297 0 0 0 chr3 96953053 96953086 -121084072 + (TA)n Simple_repeat Simple_repeat 2 34 0 265 214 14 0 chr3 96953115 96953185 -121083973 + (TA)n Simple_repeat Simple_repeat 2 72 0 285 333 17 23 chr3 96953216 96953485 -121083673 - L1PA12 LINE L1 -5140 1705 1422 349 304 46 15 chr3 96953528 96953715 -121083443 - L1M2 LINE L1 -6586 252 43 489 366 38 24 chr3 96954586 96954878 -121082280 - L3 LINE CR1 -34 1543 1248 29 0 0 0 chr3 96956129 96956158 -121081000 + AT_rich Low_complexity Low_complexity 1 29 0 714 281 63 22 chr3 96956335 96956701 -121080457 - MER114 LTR ERV -3 645 265 242 253 20 20 chr3 96956963 96957062 -121080096 - L1M4 LINE L1 -2364 3782 3684 919 343 41 9 chr3 96957312 96957650 -121079508 + LTR16A LTR ERVL 96 444 -6 337 278 41 0 chr3 96957653 96957750 -121079408 + MIR SINE MIR 146 246 -16 281 252 41 3 chr3 96958076 96958160 -121078998 - MLT1G LTR MaLR -58 532 413 3675 171 32 32 chr3 96958161 96958946 -121078212 + LTR1 LTR ERV1 1 785 0 288 346 33 11 chr3 96959747 96959929 -121077229 - MLT1-int LTR MaLR -827 544 359 403 35 4 0 chr3 96959991 96960048 -121077110 - L1PA3 LINE L1 -712 5443 5394 6112 24 0 0 chr3 96960048 96960751 -121076407 + L1PA3 LINE L1 5438 6144 -11 286 295 49 8 chr3 96960921 96961043 -121076115 - MLT1F1 LTR MaLR -2 553 427 323 323 77 22 chr3 96961182 96961429 -121075729 - MLT1F1 LTR MaLR -276 319 32 211 114 29 0 chr3 96962539 96962574 -121074584 + CT-rich Low_complexity Low_complexity 2 37 0 21 100 0 0 chr3 96964197 96964267 -121072891 + AT_rich Low_complexity Low_complexity 1 70 0 25 65 0 0 chr3 96964391 96964437 -121072721 + AT_rich Low_complexity Low_complexity 1 46 0 232 254 0 0 chr3 96964451 96964518 -121072640 + (TA)n Simple_repeat Simple_repeat 2 68 0 28 48 0 0 chr3 96965227 96965269 -121071889 + AT_rich Low_complexity Low_complexity 1 42 0 222 205 0 0 chr3 96965569 96965608 -121071550 + (CA)n Simple_repeat Simple_repeat 2 40 0 677 102 20 0 chr3 96965727 96965855 -121071303 + AluSg/x SINE Alu 188 317 0 21 0 0 0 chr3 96966514 96966535 -121070623 + AT_rich Low_complexity Low_complexity 1 21 0 363 164 16 107 chr3 96966602 96966724 -121070434 + MER61E LTR ERV1 1 111 -458 245 254 134 0 chr3 96966889 96966956 -121070202 + MER51A LTR ERV1 208 283 -351 454 247 38 25 chr3 96967022 96967265 -121069893 + MER61D LTR ERV1 335 1232 -39 1143 218 14 102 chr3 96967304 96967675 -121069483 - MLT1A2 LTR MaLR -36 338 1 2243 128 19 25 chr3 96967792 96968158 -121069000 + THE1B LTR MaLR 1 364 0 10057 125 24 0 chr3 96968158 96969650 -121067508 + THE1B-int LTR MaLR 1 1527 -53 1534 214 3 13 chr3 96969648 96970035 -121067123 + L1 LINE L1 4284 4666 -1480 * 312 343 44 25 chr3 96970582 96970786 -121066372 + L1 LINE L1 4112 4319 -1827 782 301 204 20 chr3 96970790 96971335 -121065823 + L2 LINE L2 1644 2288 -1026 484 249 55 77 chr3 96972881 96973154 -121064004 - LTR7 LTR ERV1 0 450 184 1657 179 137 11 chr3 96973750 96974129 -121063029 + MSTA LTR MaLR 1 427 -1 5068 160 8 52 chr3 96974132 96975083 -121062075 + MSTA-int LTR MaLR 3 912 -668 1162 135 14 3 chr3 96975083 96975269 -121061889 + MLT2A2 LTR ERVL 293 453 0 1326 164 17 4 chr3 96975269 96975500 -121061658 + MSTA-int LTR MaLR 1347 1580 0 1746 165 129 23 chr3 96975500 96975887 -121061271 + MSTA LTR MaLR 1 428 0 1917 124 33 17 chr3 96975967 96976266 -121060892 + AluSg SINE Alu 1 304 -6 30 59 0 0 chr3 96977433 96977484 -121059674 + AT_rich Low_complexity Low_complexity 1 51 0 450 294 8 0 chr3 96977698 96977824 -121059334 - L1MC4 LINE L1 -495 7547 7421 9755 226 25 63 chr3 96978060 96983511 -121053647 - L1PA16 LINE L1 -17 7587 2182 259 343 0 0 chr3 96983728 96983827 -121053331 - L1PA16 LINE L1 -5400 2181 2083 885 339 49 33 chr3 96983939 96984514 -121052644 - L1PA16 LINE L1 -6203 1371 788 624 239 51 51 chr3 96984527 96984761 -121052397 - L1MC4 LINE L1 -648 7394 7161 27 92 0 0 chr3 96984958 96985034 -121052124 + AT_rich Low_complexity Low_complexity 1 76 0 2125 108 46 38 chr3 96985087 96985459 -121051699 + THE1C LTR MaLR 1 375 0 22 35 0 0 chr3 96985489 96985518 -121051640 + AT_rich Low_complexity Low_complexity 1 29 0 896 221 18 71 chr3 96986902 96987183 -121049975 + MLT2B1 LTR ERVL 1 266 -254 1046 173 72 5 chr3 96987225 96987433 -121049725 + MER46B DNA MER2_type 2 98 -138 1646 222 33 5 chr3 96987486 96987883 -121049275 + L1MB7 LINE L1 5768 6175 -9 318 291 55 9 chr3 96987894 96988004 -121049154 - L2 LINE L2 -40 3273 3159 876 227 39 101 chr3 96988053 96988440 -121048718 + MLT1A2 LTR MaLR 1 363 -11 1661 168 31 3 chr3 96988469 96988796 -121048362 + L1MA4 LINE L1 5954 6289 -11 416 368 33 31 chr3 96988831 96989160 -121047998 - L2 LINE L2 -261 3052 2726 217 229 21 0 chr3 96989167 96989215 -121047943 + (CAGGA)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chr3 96989450 96989472 -121047686 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 96989542 96989564 -121047594 + AT_rich Low_complexity Low_complexity 1 22 0 533 330 52 4 chr3 96989602 96989832 -121047326 + MIR SINE MIR 8 248 -14 421 223 91 8 chr3 96990232 96990353 -121046805 + MIR SINE MIR 119 249 -13 260 264 66 41 chr3 96991152 96991273 -121045885 - MER110 LTR ERV1 -6 485 362 2312 83 0 0 chr3 96992832 96993133 -121044025 - AluSc SINE Alu -4 305 5 180 0 0 0 chr3 96994127 96994147 -121043011 + (TG)n Simple_repeat Simple_repeat 1 20 0 308 311 89 72 chr3 96994404 96994584 -121042574 + HAL1 LINE L1 17 199 -2308 1533 157 12 0 chr3 96994686 96994934 -121042224 + AluJb SINE Alu 1 251 -61 29 0 0 0 chr3 96994942 96994971 -121042187 + AT_rich Low_complexity Low_complexity 1 29 0 440 223 48 0 chr3 96995235 96995338 -121041820 - MLT1D LTR MaLR 0 505 398 568 276 116 20 chr3 96996802 96997001 -121040157 + MIR SINE MIR 15 232 -30 2670 26 3 0 chr3 96997354 96997663 -121039495 - AluY SINE Alu -1 310 1 267 211 132 0 chr3 96997910 96997986 -121039172 + MLT1I LTR MaLR 1 86 -323 451 282 145 35 chr3 96998157 96998384 -121038774 - LTR40b LTR ERVL -8 454 203 286 153 0 34 chr3 96998572 96998631 -121038527 - LTR40a LTR ERVL -372 147 91 258 32 0 0 chr3 97000729 97000760 -121036398 + (TAA)n Simple_repeat Simple_repeat 1 31 0 306 0 0 0 chr3 97001513 97001547 -121035611 + (CA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr3 97001604 97001625 -121035533 + AT_rich Low_complexity Low_complexity 1 21 0 347 314 51 17 chr3 97001778 97001896 -121035262 + L2 LINE L2 3142 3263 -9 2166 120 0 0 chr3 97001898 97002197 -121034961 + AluSx SINE Alu 1 299 -13 657 310 97 29 chr3 97002444 97002993 -121034165 - L1MC4a LINE L1 -1905 5903 5318 22 35 0 0 chr3 97003076 97003105 -121034053 + AT_rich Low_complexity Low_complexity 1 29 0 320 167 26 0 chr3 97003108 97003161 -121033997 + (TATG)n Simple_repeat Simple_repeat 1 58 -22 225 0 0 0 chr3 97003161 97003186 -121033972 + (CA)n Simple_repeat Simple_repeat 2 26 0 320 167 26 0 chr3 97003186 97003210 -121033948 + (TATG)n Simple_repeat Simple_repeat 58 80 0 1927 189 33 32 chr3 97003265 97003814 -121033344 - MLT2A2 LTR ERVL 0 554 1 28 61 0 0 chr3 97003958 97004007 -121033151 + AT_rich Low_complexity Low_complexity 1 49 0 414 53 0 0 chr3 97004624 97004681 -121032477 + (TG)n Simple_repeat Simple_repeat 2 58 0 1993 63 3 35 chr3 97004681 97004958 -121032200 - AluY SINE Alu -25 286 17 22 56 0 0 chr3 97005997 97006033 -121031125 + AT_rich Low_complexity Low_complexity 1 36 0 342 298 11 11 chr3 97006951 97007045 -121030113 + L1MA10 LINE L1 898 991 -6046 2364 107 23 0 chr3 97007046 97007393 -121029765 - THE1A LTR MaLR 0 355 1 10649 112 8 15 chr3 97007393 97008985 -121028173 - THE1A-int LTR MaLR 0 1580 1 2513 95 9 0 chr3 97008989 97009336 -121027822 - THE1A LTR MaLR -5 350 1 2434 272 115 31 chr3 97009559 97011659 -121025499 + L1MA10 LINE L1 1589 3414 -3692 324 327 0 0 chr3 97011899 97012000 -121025158 + L1MC4 LINE L1 6603 6703 -1339 5912 222 60 64 chr3 97012004 97013246 -121023912 + L1MA10 LINE L1 3403 4634 -2472 2283 111 3 0 chr3 97013246 97013553 -121023605 + AluSp SINE Alu 2 309 -4 5912 222 60 64 chr3 97013553 97014423 -121022735 + L1MA10 LINE L1 4634 5506 -1600 1189 150 66 0 chr3 97014425 97014682 -121022476 - L1M3 LINE L1 -679 5489 5218 1563 233 92 37 chr3 97014682 97015388 -121021770 + L1MA10 LINE L1 6489 7246 -48 673 204 108 0 chr3 97016006 97016022 -121021136 + L1MA10 LINE L1 6148 6161 -173 180 77 0 0 chr3 97016022 97016048 -121021110 + (TAA)n Simple_repeat Simple_repeat 2 27 0 673 204 108 0 chr3 97016048 97016198 -121020960 + L1MA10 LINE L1 6161 6332 -2 335 368 80 0 chr3 97016235 97016360 -121020798 - L2 LINE L2 -5 3267 3133 349 293 111 33 chr3 97016493 97016674 -121020484 + L2 LINE L2 1324 1518 -1796 7006 147 14 9 chr3 97016677 97017854 -121019304 + HSMAR2 DNA Mariner 2 1183 -119 336 174 145 0 chr3 97017853 97017922 -121019236 + MER45B DNA AcHobo 407 485 -555 * 548 118 0 0 chr3 97017959 97018052 -121019106 + HSMAR2 DNA Mariner 1185 1277 -25 209 380 28 17 chr3 97018074 97018253 -121018905 + L2 LINE L2 1519 1699 -1615 1586 234 39 3 chr3 97018253 97018612 -121018546 - MER45B DNA AcHobo -342 698 327 355 228 13 0 chr3 97018625 97018704 -121018454 + MER45B DNA AcHobo 250 329 -711 890 319 17 10 chr3 97018715 97019007 -121018151 - MER45B DNA AcHobo -735 305 12 252 216 0 20 chr3 97019021 97019072 -121018086 + L2 LINE L2 2486 2535 -779 1922 67 8 4 chr3 97019072 97019326 -121017832 - L1PA4 LINE L1 -123 6032 5778 560 60 0 36 chr3 97019297 97019381 -121017777 + L1PA3 LINE L1 6072 6152 -3 * 896 334 73 47 chr3 97019382 97020104 -121017054 + L2 LINE L2 2530 3269 -44 4980 171 36 22 chr3 97020929 97022528 -121014630 - L1PA15 LINE L1 -6 6159 4551 5892 99 16 13 chr3 97022529 97024382 -121012776 - L1PA14 LINE L1 -1 6160 4310 1538 264 79 32 chr3 97024465 97025146 -121012012 + L1MC4 LINE L1 6930 7642 -400 561 222 8 0 chr3 97025165 97025282 -121011876 + LTR40a LTR ERVL 8 125 -394 1997 128 7 3 chr3 97025285 97025590 -121011568 - AluSq SINE Alu -7 306 1 258 196 0 20 chr3 97025699 97025750 -121011408 + LTR40b LTR ERVL 394 443 -19 460 307 32 0 chr3 97025761 97025950 -121011208 + L1MC4 LINE L1 7707 7901 -141 22 35 0 0 chr3 97025987 97026016 -121011142 + AT_rich Low_complexity Low_complexity 1 29 0 2371 77 0 6 chr3 97026029 97026342 -121010816 + AluY SINE Alu 1 311 0 6320 41 0 0 chr3 97027116 97027877 -121009281 - L1PA4 LINE L1 -8 6147 5387 279 54 0 0 chr3 97028464 97028501 -121008657 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 342 302 8 31 chr3 97032143 97032272 -121004886 + MLT1K LTR MaLR 357 482 -106 1940 203 113 16 chr3 97032870 97033293 -121003865 + Tigger4(Zombi) DNA MER2_type 2 465 -2266 1409 211 0 21 chr3 97033293 97033572 -121003586 + AluJb SINE Alu 1 273 -39 327 104 0 0 chr3 97033580 97033628 -121003530 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 266 246 0 0 chr3 97033635 97033696 -121003462 + Tigger4(Zombi) DNA MER2_type 471 531 -2200 * 708 230 25 0 chr3 97033691 97033852 -121003306 + Tigger4(Zombi) DNA MER2_type 2567 2731 0 365 217 19 25 chr3 97033855 97034016 -121003142 + (TTATA)n Simple_repeat Simple_repeat 3 162 0 38 22 0 0 chr3 97034020 97034065 -121003093 + AT_rich Low_complexity Low_complexity 1 45 0 642 213 7 0 chr3 97034398 97034534 -121002624 + L1MD2 LINE L1 5446 5582 -660 1577 173 88 0 chr3 97034535 97034905 -121002253 - AluSg SINE Alu 0 397 3 2397 244 64 16 chr3 97034906 97035440 -121001718 + L1MD2 LINE L1 5583 6163 -196 186 43 0 0 chr3 97035440 97035463 -121001695 + (CA)n Simple_repeat Simple_repeat 2 24 0 2397 244 64 16 chr3 97035463 97035663 -121001495 + L1MD2 LINE L1 6163 6352 -7 204 209 0 23 chr3 97035891 97035934 -121001224 + (TG)n Simple_repeat Simple_repeat 2 43 0 225 0 0 0 chr3 97036415 97036440 -121000718 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 351 0 0 0 chr3 97036439 97036478 -121000680 + (GA)n Simple_repeat Simple_repeat 2 40 0 2795 158 16 10 chr3 97036981 97037124 -121000034 - Tigger1 DNA MER2_type -1172 1246 1105 387 0 0 0 chr3 97037124 97037167 -120999991 + (TA)n Simple_repeat Simple_repeat 2 44 0 1930 138 0 0 chr3 97037167 97037449 -120999709 - AluSx SINE Alu -30 282 1 2795 158 16 10 chr3 97037449 97037793 -120999365 - Tigger1 DNA MER2_type -1312 1106 755 31 0 0 0 chr3 97037794 97037825 -120999333 + AT_rich Low_complexity Low_complexity 1 31 0 2242 138 24 11 chr3 97038114 97038484 -120998674 - THE1C LTR MaLR 0 375 1 7260 154 59 41 chr3 97038484 97040037 -120997121 - THE1C-int LTR MaLR 0 1580 1 2179 153 25 11 chr3 97040039 97040405 -120996753 - THE1C LTR MaLR -2 373 3 253 391 58 12 chr3 97041576 97041834 -120995324 + L3b LINE CR1 1105 1374 -209 264 164 16 0 chr3 97041850 97041911 -120995247 + (TA)n Simple_repeat Simple_repeat 2 63 0 24 32 0 0 chr3 97044106 97044137 -120993021 + AT_rich Low_complexity Low_complexity 1 31 0 25 90 0 0 chr3 97044638 97044705 -120992453 + AT_rich Low_complexity Low_complexity 1 67 0 1898 99 16 67 chr3 97046518 97046832 -120990326 - AluSg SINE Alu -12 298 1 23 0 0 0 chr3 97048562 97048585 -120988573 + AT_rich Low_complexity Low_complexity 1 23 0 2198 89 0 46 chr3 97049431 97049757 -120987401 + AluY SINE Alu 1 311 0 207 0 0 0 chr3 97050030 97050053 -120987105 + (T)n Simple_repeat Simple_repeat 1 23 0 198 143 0 0 chr3 97050140 97050175 -120986983 + (TG)n Simple_repeat Simple_repeat 1 35 0 1734 289 105 57 chr3 97050662 97051675 -120985483 + L2 LINE L2 1605 2567 -746 3903 79 6 0 chr3 97051675 97052195 -120984963 - L1PA7 LINE L1 0 6154 5632 1734 289 105 57 chr3 97052195 97052697 -120984461 + L2 LINE L2 2567 3191 -122 1163 115 115 10 chr3 97052697 97052905 -120984253 - MER30 DNA MER1_type 0 230 1 1734 289 105 57 chr3 97052905 97052977 -120984181 + L2 LINE L2 3191 3258 -55 393 134 74 4 chr3 97053034 97053112 -120984046 - L1P3 LINE L1 -613 5559 5479 313 324 85 15 chr3 97053287 97053546 -120983612 - L1ME LINE L1 -336 5785 5509 977 245 136 16 chr3 97053991 97054314 -120982844 - MLT1A1 LTR MaLR -2 363 2 244 0 56 0 chr3 97055147 97055183 -120981975 + (TTG)n Simple_repeat Simple_repeat 2 39 0 587 295 215 43 chr3 97055512 97056255 -120980903 - L3 LINE CR1 -53 1524 654 338 345 123 26 chr3 97056789 97057140 -120980018 + MLT1J2 LTR MaLR 66 450 0 1140 174 55 13 chr3 97057156 97057392 -120979766 - MER31B LTR ERV1 0 466 221 7051 33 0 0 chr3 97057393 97058235 -120978923 - L1PA3 LINE L1 0 6155 5314 652 221 75 66 chr3 97058240 97058466 -120978692 - MER31B LTR ERV1 -238 228 1 1980 180 9 0 chr3 97059413 97059758 -120977400 - MER7A DNA MER2_type 0 346 1 36 23 0 0 chr3 97060909 97060952 -120976206 + AT_rich Low_complexity Low_complexity 1 43 0 2008 131 0 0 chr3 97061365 97061655 -120975503 + AluSx SINE Alu 1 290 -22 358 261 84 21 chr3 97062090 97062232 -120974926 + MIR SINE MIR 112 262 0 280 349 134 17 chr3 97062676 97062908 -120974250 - MIR SINE MIR -1 261 3 26 50 0 0 chr3 97062912 97062952 -120974206 + AT_rich Low_complexity Low_complexity 1 40 0 21 57 0 0 chr3 97063203 97063238 -120973920 + AT_rich Low_complexity Low_complexity 1 35 0 2092 66 38 14 chr3 97063279 97063566 -120973592 - AluY SINE Alu -16 295 2 2335 140 98 9 chr3 97063658 97064108 -120973050 - L1PA16 LINE L1 0 6166 5677 445 147 21 42 chr3 97064108 97064203 -120972955 + L1P4 LINE L1 5654 5746 -420 362 321 48 57 chr3 97064345 97064554 -120972604 + MIR SINE MIR 29 235 -27 1853 171 33 28 chr3 97064951 97065313 -120971845 + THE1B LTR MaLR 1 364 0 599 257 244 31 chr3 97065321 97065483 -120971675 + L1MA9 LINE L1 1309 1435 -6054 1562 172 46 46 chr3 97065483 97065855 -120971303 - THE1C LTR MaLR 0 375 4 599 257 244 31 chr3 97065855 97066205 -120970953 + L1MA9 LINE L1 1435 1930 -5559 * 11134 229 37 38 chr3 97066202 97066474 -120970684 + L1MA9 LINE L1 2444 2715 -5016 1695 173 0 44 chr3 97066474 97066801 -120970357 + AluSx SINE Alu 1 314 0 11134 229 37 38 chr3 97066801 97067139 -120970019 + L1MA9 LINE L1 2715 3052 -4679 1754 141 53 11 chr3 97067139 97067422 -120969736 + AluSc SINE Alu 2 296 -13 11134 229 37 38 chr3 97067422 97067632 -120969526 + L1MA9 LINE L1 3052 3261 -4470 1376 6 0 0 chr3 97067632 97067789 -120969369 + L1PA2 LINE L1 5999 6155 0 11134 229 37 38 chr3 97067789 97067852 -120969306 + L1MA9 LINE L1 3261 3323 -4408 1328 226 45 10 chr3 97067852 97068140 -120969018 - AluJo SINE Alu -12 300 3 11134 229 37 38 chr3 97068140 97070860 -120966298 + L1MA9 LINE L1 3323 6026 -1705 2465 21 0 0 chr3 97070860 97071149 -120966009 + L1PA2 LINE L1 5866 6154 -1 11134 229 37 38 chr3 97071149 97072150 -120965008 + L1MA9 LINE L1 6026 7027 -704 4598 149 19 17 chr3 97072144 97072977 -120964181 + L1PB4 LINE L1 5317 6151 -5 * 3024 181 57 27 chr3 97072969 97073175 -120963983 + L1MA9 LINE L1 7011 7209 -522 * 216 0 0 0 chr3 97073175 97073199 -120963959 + (CA)n Simple_repeat Simple_repeat 1 24 0 3024 181 57 27 chr3 97073199 97073692 -120963466 + L1MA9 LINE L1 7209 7731 0 2345 142 34 15 chr3 97074328 97074716 -120962442 + MSTA LTR MaLR 1 399 -29 2785 27 0 0 chr3 97074716 97075045 -120962113 - L1PA3 LINE L1 -2 6153 5825 2345 142 34 15 chr3 97075045 97075065 -120962093 + MSTA LTR MaLR 399 417 -11 7607 209 30 15 chr3 97075073 97075504 -120961654 + MSTA-int LTR MaLR 2 425 -1226 180 0 0 0 chr3 97075504 97075524 -120961634 + (CAA)n Simple_repeat Simple_repeat 2 21 0 7607 209 30 15 chr3 97075524 97076677 -120960481 + MSTA-int LTR MaLR 425 1609 -42 1154 161 64 45 chr3 97076677 97076944 -120960214 + MSTA LTR MaLR 157 428 0 369 343 107 55 chr3 97078881 97079380 -120957778 + L2 LINE L2 2753 3283 -30 3280 40 0 0 chr3 97079380 97079781 -120957377 - L1PA4 LINE L1 -1 6154 5754 369 343 107 55 chr3 97079781 97079813 -120957345 + L2 LINE L2 3283 3312 -1 3677 60 4 2 chr3 97080206 97080675 -120956483 - L1PA7 LINE L1 0 6154 5685 21 36 0 0 chr3 97080831 97080859 -120956299 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 97080884 97080912 -120956246 + AT_rich Low_complexity Low_complexity 1 28 0 285 75 0 0 chr3 97080922 97080962 -120956196 + (TA)n Simple_repeat Simple_repeat 2 41 0 27 0 0 0 chr3 97081098 97081125 -120956033 + AT_rich Low_complexity Low_complexity 1 27 0 302 136 0 0 chr3 97082374 97082418 -120954740 + L1PA10 LINE L1 6104 6147 -21 486 188 19 0 chr3 97082418 97082578 -120954580 + (TA)n Simple_repeat Simple_repeat 2 164 0 189 250 167 17 chr3 97082589 97082649 -120954509 + L2 LINE L2 3002 3070 -202 390 292 0 0 chr3 97083016 97083112 -120954046 + MER5A DNA MER1_type 10 105 -84 225 0 0 0 chr3 97083497 97083522 -120953636 + (TG)n Simple_repeat Simple_repeat 2 26 0 31 0 0 0 chr3 97086358 97086389 -120950769 + AT_rich Low_complexity Low_complexity 1 31 0 262 318 0 0 chr3 97086482 97086545 -120950613 + MIR SINE MIR 35 97 -165 267 181 24 12 chr3 97086645 97086728 -120950430 + (TA)n Simple_repeat Simple_repeat 2 85 0 309 139 78 12 chr3 97086756 97086922 -120950236 + (TA)n Simple_repeat Simple_repeat 2 178 0 413 282 57 0 chr3 97192231 97192355 -120844803 + MLT1J2 LTR MaLR 15 145 -305 322 256 12 0 chr3 97192498 97192580 -120844578 + MLT1J2 LTR MaLR 368 450 0 21 0 0 0 chr3 97192986 97193007 -120844151 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 97193091 97193115 -120844043 + AT_rich Low_complexity Low_complexity 1 24 0 637 307 21 29 chr3 97194105 97194343 -120842815 + MIR SINE MIR 3 238 -24 831 65 0 0 chr3 97194834 97194942 -120842216 + L1PA2 LINE L1 6048 6155 0 24 0 0 0 chr3 97195105 97195129 -120842029 + AT_rich Low_complexity Low_complexity 1 24 0 213 39 0 0 chr3 97195895 97195921 -120841237 + (TTA)n Simple_repeat Simple_repeat 2 27 0 7451 25 4 0 chr3 97195922 97196919 -120840239 - L1PA3 LINE L1 -17 6138 5138 2235 110 2 95 chr3 97197638 97198039 -120839119 + THE1B LTR MaLR 1 364 0 368 248 168 97 chr3 97198921 97199231 -120837927 - MER46C DNA MER2_type 0 338 7 296 283 97 76 chr3 97199267 97199412 -120837746 - MIR SINE MIR -106 156 9 259 274 39 39 chr3 97199483 97199585 -120837573 + L2 LINE L2 2191 2292 -1022 21 36 0 0 chr3 97200598 97200626 -120836532 + AT_rich Low_complexity Low_complexity 1 28 0 808 310 53 24 chr3 97201194 97201645 -120835513 - LTR16B LTR ERVL 0 464 1 4106 156 89 13 chr3 97202280 97202559 -120834599 - MER4D LTR ERV1 0 903 647 1717 107 125 25 chr3 97202559 97202839 -120834319 - AluSq SINE Alu -1 312 5 4106 156 89 13 chr3 97202839 97203398 -120833760 - MER4D LTR ERV1 -256 647 1 213 205 0 0 chr3 97205448 97205487 -120831671 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 1363 218 71 7 chr3 97206778 97207072 -120830086 + MER44D DNA MER2_type 2 314 -391 * 1918 138 30 24 chr3 97207069 97207403 -120829755 + MER44D DNA MER2_type 270 605 0 227 281 60 65 chr3 97207445 97207630 -120829528 - HAL1 LINE L1 -4 2503 2320 543 117 0 68 chr3 97207795 97207810 -120829348 + L1P5 LINE L1 5693 5707 -449 991 201 0 0 chr3 97207810 97207994 -120829164 - L1PB4 LINE L1 0 6156 5973 543 117 0 68 chr3 97207994 97208081 -120829077 + L1P5 LINE L1 5707 5788 -368 213 303 26 26 chr3 97208875 97208951 -120828207 - L2 LINE L2 0 3313 3238 218 345 103 14 chr3 97210035 97210180 -120826978 - L2 LINE L2 -578 2736 2579 851 221 8 78 chr3 97210288 97210532 -120826626 + AluJo SINE Alu 3 229 -83 264 100 0 0 chr3 97210534 97210574 -120826584 + AluJ/F(R)AM SINE Alu 156 195 -116 588 216 0 0 chr3 97210574 97210690 -120826468 + AluJb SINE Alu 158 273 -39 325 342 0 7 chr3 97210938 97211233 -120825925 - AluSx SINE Alu -9 293 1 261 0 0 0 chr3 97211520 97211549 -120825609 + (T)n Simple_repeat Simple_repeat 1 29 0 211 308 13 0 chr3 97211880 97211958 -120825200 + (TA)n Simple_repeat Simple_repeat 1 79 0 423 337 24 0 chr3 97212515 97212684 -120824474 + MIR SINE MIR 20 192 -70 252 0 0 0 chr3 97213469 97213497 -120823661 + (T)n Simple_repeat Simple_repeat 1 28 0 218 303 13 0 chr3 97213828 97213904 -120823254 + (TA)n Simple_repeat Simple_repeat 2 78 0 423 338 18 31 chr3 97214464 97214686 -120822472 + MIR SINE MIR 20 238 -24 2110 65 0 4 chr3 97214780 97215041 -120822117 - AluY SINE Alu -19 292 33 268 311 96 34 chr3 97215093 97215270 -120821888 - MIR SINE MIR -1 261 74 245 246 0 0 chr3 97216301 97216358 -120820800 + CT-rich Low_complexity Low_complexity 2 58 0 241 248 10 30 chr3 97218212 97218313 -120818845 + (TAAA)n Simple_repeat Simple_repeat 4 102 0 189 0 0 0 chr3 97218606 97218627 -120818531 + (TCTA)n Simple_repeat Simple_repeat 3 23 0 721 197 0 0 chr3 97218644 97218766 -120818392 - FLAM_A SINE Alu -11 122 1 525 221 68 37 chr3 97218839 97218959 -120818199 - MER5C DNA MER1_type 0 324 194 2371 96 3 0 chr3 97218959 97219271 -120817887 + AluSp SINE Alu 1 313 0 525 221 68 37 chr3 97219271 97219340 -120817818 - MER5C DNA MER1_type -130 194 129 6242 86 3 8 chr3 97219525 97220639 -120816519 - L1PA11 LINE L1 -2 6172 5044 439 134 103 21 chr3 97220708 97220805 -120816353 - MER5C DNA MER1_type -219 105 1 182 365 40 0 chr3 97221554 97221628 -120815530 + MIR3 SINE MIR 91 167 -41 2094 139 19 30 chr3 97221667 97222035 -120815123 + THE1B LTR MaLR 1 364 0 206 256 0 0 chr3 97222066 97222109 -120815049 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 663 176 25 0 chr3 97223195 97223350 -120813808 + FLAM_A SINE Alu 1 158 0 985 161 71 161 chr3 97223363 97223537 -120813621 + AluJb SINE Alu 11 147 -165 2010 129 7 0 chr3 97223537 97223870 -120813288 + AluSx SINE Alu 5 339 0 985 161 71 161 chr3 97223870 97224015 -120813143 + AluJb SINE Alu 147 303 -9 285 308 28 9 chr3 97225531 97225638 -120811520 + MIR SINE MIR 70 178 -84 311 319 76 35 chr3 97226085 97226229 -120810929 - L2 LINE L2 -16 3256 3107 844 284 124 5 chr3 97226670 97227038 -120810120 - MLT1H1 LTR MaLR -2 588 139 291 228 32 38 chr3 97227135 97227293 -120809865 - L1MC5 LINE L1 -312 7649 7493 240 289 121 48 chr3 97227299 97227465 -120809693 - L1MC4a LINE L1 -458 7350 7238 305 311 42 52 chr3 97227583 97227795 -120809363 - L1MC5 LINE L1 -743 7218 7009 21 36 0 0 chr3 97227847 97227875 -120809283 + AT_rich Low_complexity Low_complexity 1 28 0 976 288 132 31 chr3 97227922 97228791 -120808367 - L1MC4a LINE L1 -865 6943 5987 225 0 0 0 chr3 97228792 97228817 -120808341 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 221 357 138 36 chr3 97229139 97229335 -120807823 - L2 LINE L2 -385 2929 2714 21 0 0 0 chr3 97229611 97229632 -120807526 + AT_rich Low_complexity Low_complexity 1 21 0 2194 116 3 0 chr3 97229670 97229971 -120807187 - AluSp SINE Alu -10 303 2 30018 95 6 9 chr3 97230413 97236574 -120800584 + L1PA6 LINE L1 12 6152 -2 1943 186 75 65 chr3 97236673 97237178 -120799980 + MER67D LTR ERV1 1 510 -4 29 0 0 0 chr3 97237619 97237648 -120799510 + AT_rich Low_complexity Low_complexity 1 29 0 205 306 48 0 chr3 97237664 97237726 -120799432 - MIR SINE MIR -110 152 88 340 289 0 19 chr3 97238959 97239063 -120798095 + MLT1H LTR MaLR 431 532 -17 26 0 0 0 chr3 97239171 97239197 -120797961 + AT_rich Low_complexity Low_complexity 1 26 0 371 357 41 10 chr3 97239270 97239466 -120797692 - L1MC4a LINE L1 -1885 5923 5722 240 298 170 14 chr3 97239590 97239731 -120797427 - MIR SINE MIR -54 208 46 223 313 0 0 chr3 97239898 97239962 -120797196 - L2 LINE L2 0 3313 3250 1651 201 41 81 chr3 97240029 97240536 -120796622 + MER34B LTR ERV1 11 497 -68 4879 189 52 9 chr3 97240558 97241832 -120795326 - L1MA4A LINE L1 -6 6999 5781 6770 74 28 1 chr3 97241832 97242706 -120794452 - MER11D LTR ERVK 0 897 1 4879 189 52 9 chr3 97242706 97242881 -120794277 - L1MA4A LINE L1 -1224 5781 5615 252 77 0 0 chr3 97242881 97242920 -120794238 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4879 189 52 9 chr3 97242920 97243083 -120794075 - L1MA4A LINE L1 -1390 5615 5318 1956 172 32 19 chr3 97243082 97243929 -120793229 - L1MA4A LINE L1 -4101 2748 1799 * 341 61 0 61 chr3 97243944 97244010 -120793148 - L1PA6 LINE L1 -1 6153 6092 9393 76 39 1 chr3 97244133 97244504 -120792654 - L1P2 LINE L1 -471 5683 5328 238 67 44 0 chr3 97244504 97244549 -120792609 + (TTTG)n Simple_repeat Simple_repeat 1 47 0 9393 76 39 1 chr3 97244549 97245758 -120791400 - L1P2 LINE L1 -826 5328 4071 8268 112 41 2 chr3 97245777 97246964 -120790194 + THE1A-int LTR MaLR 348 1580 0 2256 127 6 25 chr3 97246964 97247325 -120789833 + THE1A LTR MaLR 1 354 -1 426 276 19 45 chr3 97247392 97247548 -120789610 - MIR SINE MIR -27 235 84 281 325 58 50 chr3 97248062 97248182 -120788976 - L2 LINE L2 0 3313 3193 300 203 0 0 chr3 97248224 97248283 -120788875 - MLT1H LTR MaLR 0 549 491 2042 126 0 10 chr3 97248733 97249035 -120788123 + AluSg SINE Alu 1 299 -11 663 295 124 23 chr3 97249048 97249530 -120787628 + LTR50 LTR ERVL 341 791 -4 225 157 0 98 chr3 97249519 97249570 -120787588 - MLT1I LTR MaLR -270 139 94 * 519 258 174 0 chr3 97249770 97249948 -120787210 - MIR SINE MIR -1 261 53 6193 193 122 33 chr3 97250013 97251554 -120785604 + MER52A LTR ERV1 1 1755 0 1244 75 0 23 chr3 97251644 97251818 -120785340 - L1PA8 LINE L1 -8 6164 5995 276 30 0 0 chr3 97252270 97252303 -120784855 + (TG)n Simple_repeat Simple_repeat 1 33 0 2323 86 0 10 chr3 97252774 97253088 -120784070 - AluY SINE Alu 0 311 1 21 0 0 0 chr3 97253603 97253624 -120783534 + AT_rich Low_complexity Low_complexity 1 21 0 1163 73 0 6 chr3 97253969 97254133 -120783025 + (GAA)n Simple_repeat Simple_repeat 2 164 0 22 56 0 0 chr3 97254702 97254738 -120782420 + AT_rich Low_complexity Low_complexity 1 36 0 4204 33 14 0 chr3 97255614 97256124 -120781034 - L1PA4 LINE L1 -347 5808 5292 2518 51 0 0 chr3 97256124 97256434 -120780724 + L1PA4 LINE L1 5837 6149 -6 37 0 0 0 chr3 97256441 97256478 -120780680 + AT_rich Low_complexity Low_complexity 1 37 0 798 204 0 0 chr3 97256569 97256721 -120780437 - FRAM SINE Alu -11 165 14 21 36 0 0 chr3 97256996 97257024 -120780134 + AT_rich Low_complexity Low_complexity 1 28 0 228 254 17 0 chr3 97257087 97257146 -120780012 - L1M4 LINE L1 -1983 4163 4104 460 344 61 39 chr3 97257475 97257885 -120779273 + ERVL LTR ERVL 1255 1673 -4091 22 0 0 0 chr3 97257987 97258009 -120779149 + AT_rich Low_complexity Low_complexity 1 22 0 204 40 0 0 chr3 97258209 97258234 -120778924 + (A)n Simple_repeat Simple_repeat 1 25 0 728 238 6 18 chr3 97258557 97258721 -120778437 + MLT1A2 LTR MaLR 1 162 -212 511 140 11 0 chr3 97258733 97258826 -120778332 + CT-rich Low_complexity Low_complexity 2 95 0 588 239 8 8 chr3 97258916 97259046 -120778112 + MLT1A2 LTR MaLR 243 372 -2 1224 270 71 32 chr3 97259047 97259455 -120777703 - MLT2B1 LTR ERVL -96 424 1 258 312 13 0 chr3 97259470 97259547 -120777611 + ERVL LTR ERVL 3783 3860 -1904 1187 358 68 42 chr3 97259657 97260281 -120776877 + ERVL LTR ERVL 3923 4530 -1234 1865 174 10 10 chr3 97260281 97260586 -120776572 + AluSx SINE Alu 1 305 -7 1187 358 68 42 chr3 97260586 97261320 -120775838 + ERVL LTR ERVL 4530 5345 -419 303 357 43 16 chr3 97261360 97261599 -120775559 + L1M3a LINE L1 346 770 -5185 295 330 35 25 chr3 97261655 97261852 -120775306 + L1MA7 LINE L1 2072 2270 -5216 2205 270 28 23 chr3 97261907 97263264 -120773894 + L1M3a LINE L1 335 1707 -4328 710 115 39 0 chr3 97263264 97263368 -120773790 + AluSg/x SINE Alu 190 297 -15 7981 61 7 64 chr3 97263429 97264551 -120772607 + SVA Other Other 327 1384 -2 206 295 126 0 chr3 97264562 97264657 -120772501 + L3 LINE CR1 1180 1286 -291 2145 128 10 0 chr3 97264781 97265087 -120772071 + AluSx SINE Alu 1 309 -3 8979 213 81 56 chr3 97265120 97265610 -120771548 + L1MA7 LINE L1 2905 3381 -4184 2118 133 3 0 chr3 97265610 97265919 -120771239 + AluSg SINE Alu 1 310 0 8979 213 81 56 chr3 97265919 97266184 -120770974 + L1MA7 LINE L1 3381 3638 -3927 1321 219 14 27 chr3 97266184 97266476 -120770682 + AluJo SINE Alu 1 288 -24 8979 213 81 56 chr3 97266476 97268937 -120768221 + L1MA7 LINE L1 3638 6225 -1340 1032 214 45 8 chr3 97268936 97269202 -120767956 + L1MA8 LINE L1 6012 6287 -4 * 2261 231 65 31 chr3 97269228 97270041 -120767117 + L1MA7 LINE L1 6207 7232 -478 243 0 0 0 chr3 97270041 97270068 -120767090 + (TA)n Simple_repeat Simple_repeat 2 28 0 2261 231 65 31 chr3 97270068 97270387 -120766771 + L1MA7 LINE L1 7232 7539 -171 25 31 0 0 chr3 97271436 97271468 -120765690 + AT_rich Low_complexity Low_complexity 1 32 0 494 261 42 103 chr3 97272012 97272342 -120764816 + HAL1b LINE L1 304 613 -735 206 245 20 0 chr3 97272823 97272872 -120764286 + GA-rich Low_complexity Low_complexity 5 54 0 2046 139 124 23 chr3 97273288 97273676 -120763482 - MSTA LTR MaLR -1 427 1 267 303 40 0 chr3 97273770 97273846 -120763312 + L2 LINE L2 3192 3270 -2 285 250 167 0 chr3 97274192 97274276 -120762882 - L1ME LINE L1 -517 5604 5507 310 141 0 84 chr3 97274462 97274533 -120762625 + MLT-int LTR MaLR 972 1036 -699 299 220 180 0 chr3 97274934 97275034 -120762124 + L1M4b LINE L1 96 213 -6646 21 0 0 0 chr3 97275409 97275430 -120761728 + AT_rich Low_complexity Low_complexity 1 21 0 2467 174 42 91 chr3 97275443 97276105 -120761053 - L1MB1 LINE L1 0 6168 5539 2044 97 4 4 chr3 97276500 97276779 -120760379 + AluSx SINE Alu 1 279 -33 384 40 0 0 chr3 97276779 97276829 -120760329 + (CA)n Simple_repeat Simple_repeat 1 50 0 192 97 0 0 chr3 97277163 97277194 -120759964 + (T)n Simple_repeat Simple_repeat 1 31 0 1721 209 16 14 chr3 97277321 97277685 -120759473 - MLT1A1 LTR MaLR 0 365 1 464 113 0 0 chr3 97278028 97278143 -120759015 - AluSg/x SINE Alu 0 332 218 498 135 0 0 chr3 97278168 97278242 -120758916 + AluJ/FLAM SINE Alu 1 74 -238 180 0 0 0 chr3 97278391 97278411 -120758747 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 218 349 28 0 chr3 97282216 97282325 -120754833 + MIR SINE MIR 66 177 -85 269 376 16 16 chr3 97283497 97283622 -120753536 + L3 LINE CR1 701 825 -752 434 208 10 10 chr3 97284474 97284575 -120752583 + MLT1K LTR MaLR 488 588 0 922 180 198 234 chr3 97284865 97285136 -120752022 + MLT2B1 LTR ERVL 2 349 -171 2429 174 46 63 chr3 97285136 97285660 -120751498 - MLT2B2 LTR ERVL 0 515 1 922 180 198 234 chr3 97285660 97285791 -120751367 + MLT2B1 LTR ERVL 349 483 -37 533 205 0 0 chr3 97285792 97285909 -120751249 + L1 LINE L1 4938 5054 -1092 635 140 44 0 chr3 97285909 97286023 -120751135 + AluSg/x SINE Alu 187 305 -4 1263 55 3 14 chr3 97286027 97286317 -120750841 + (GAAA)n Simple_repeat Simple_repeat 1 286 0 927 195 108 47 chr3 97286330 97286607 -120750551 + L1 LINE L1 5065 5358 -788 941 189 24 38 chr3 97286848 97287060 -120750098 - MER3 DNA MER1_type 0 209 1 1721 175 0 11 chr3 97287195 97287480 -120749678 - AluJb SINE Alu -28 284 3 6000 139 28 31 chr3 97287493 97287742 -120749416 - L1MA1 LINE L1 0 6302 6054 2401 64 0 0 chr3 97287742 97288038 -120749120 - AluY SINE Alu -15 296 1 6000 139 28 31 chr3 97288038 97289035 -120748123 - L1MA1 LINE L1 -248 6054 5040 1298 40 0 27 chr3 97289035 97289262 -120747896 + (TTTC)n Simple_repeat Simple_repeat 1 220 0 605 139 43 9 chr3 97289269 97289384 -120747774 - AluSg/x SINE Alu -4 305 187 400 198 0 0 chr3 97289388 97289479 -120747679 - L1MA1 LINE L1 -1095 5051 4961 2513 168 40 88 chr3 97289609 97290236 -120746922 - L1MB1 LINE L1 -154 6035 5439 1296 242 49 6 chr3 97290236 97290563 -120746595 - MLT1A1 LTR MaLR 0 365 25 799 145 0 0 chr3 97290572 97290710 -120746448 - L1MB1 LINE L1 -856 5444 5307 273 200 213 0 chr3 97290704 97290779 -120746379 + L1 LINE L1 4997 5087 -1059 * 25 0 0 0 chr3 97291431 97291456 -120745702 + AT_rich Low_complexity Low_complexity 1 25 0 2321 307 79 32 chr3 97291574 97292601 -120744557 + L1M4 LINE L1 14 1088 -5771 291 325 0 0 chr3 97292603 97292683 -120744475 + L1M4 LINE L1 1123 1202 -5657 524 270 19 46 chr3 97292696 97292959 -120744199 - L1M4 LINE L1 -4950 1592 1337 * 1154 262 45 88 chr3 97292956 97294322 -120742836 + L1M4 LINE L1 1594 2878 -3766 1480 168 16 23 chr3 97294322 97294578 -120742580 - AluJb SINE Alu -52 260 7 1154 262 45 88 chr3 97294578 97294797 -120742361 + L1M4 LINE L1 2878 3105 -3539 389 121 0 0 chr3 97294851 97294909 -120742249 + MSTB2 LTR MaLR 400 457 0 3886 248 118 78 chr3 97294911 97296579 -120740579 + MSTC-int LTR MaLR 2 1735 0 1153 217 146 13 chr3 97296579 97296957 -120740201 + MSTC LTR MaLR 1 428 0 548 278 0 21 chr3 97296957 97297144 -120740014 + L1M4 LINE L1 5182 5364 -1280 1293 195 50 43 chr3 97297242 97297563 -120739595 + AluJo SINE Alu 1 323 0 1965 84 3 84 chr3 97299219 97299578 -120737580 - AluSx SINE Alu 0 334 1 180 262 24 0 chr3 97299612 97299654 -120737504 + MIR3 SINE MIR 162 204 -4 2063 118 9 27 chr3 97299892 97300222 -120736936 + THE1A LTR MaLR 1 324 -31 10338 54 5 1 chr3 97300222 97302298 -120734860 - L1PA5 LINE L1 0 6154 4071 8181 111 44 2 chr3 97302317 97303501 -120733657 + THE1A-int LTR MaLR 348 1580 0 2110 133 8 28 chr3 97303501 97303862 -120733296 + THE1A LTR MaLR 1 354 -1 426 276 19 45 chr3 97303929 97304085 -120733073 - MIR SINE MIR -27 235 84 281 325 58 50 chr3 97304599 97304719 -120732439 - L2 LINE L2 0 3313 3193 300 203 0 0 chr3 97304761 97304820 -120732338 - MLT1H LTR MaLR 0 549 491 308 303 50 10 chr3 97305946 97306045 -120731113 + MER5A DNA MER1_type 4 106 -83 261 266 0 0 chr3 97306440 97306534 -120730624 + (TA)n Simple_repeat Simple_repeat 1 94 0 23 0 0 0 chr3 97306578 97306601 -120730557 + AT_rich Low_complexity Low_complexity 1 23 0 22 80 0 0 chr3 97306756 97306806 -120730352 + AT_rich Low_complexity Low_complexity 1 50 0 216 0 0 0 chr3 97307756 97307780 -120729378 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 1951 149 17 0 chr3 97307796 97308097 -120729061 + AluSx SINE Alu 3 308 -4 3016 45 5 0 chr3 97308241 97308619 -120728539 - L1PA5 LINE L1 -5 6149 5770 2065 245 35 35 chr3 97308629 97308766 -120728392 + L1M4 LINE L1 3658 3794 -2352 3643 108 21 108 chr3 97308766 97309494 -120727664 - MER4A LTR ERV1 0 664 1 2065 245 35 35 chr3 97309494 97309978 -120727180 + L1M4 LINE L1 3794 4283 -1863 2013 125 3 0 chr3 97309978 97310303 -120726855 + AluSx SINE Alu 1 326 0 2065 245 35 35 chr3 97310303 97310357 -120726801 + L1M4 LINE L1 4282 4335 -1811 1722 212 119 12 chr3 97310361 97310780 -120726378 + MLT2B1 LTR ERVL 1 464 -56 40506 71 7 4 chr3 97311623 97317670 -120719488 + L1PA5 LINE L1 15 6082 -72 34641 110 21 11 chr3 97317953 97318258 -120718900 - L1P2 LINE L1 -537 5617 5317 238 67 44 0 chr3 97318258 97318303 -120718855 + (TTTG)n Simple_repeat Simple_repeat 1 47 0 34641 110 21 11 chr3 97318303 97323578 -120713580 - L1P2 LINE L1 -837 5317 11 4242 251 82 69 chr3 97323588 97325476 -120711682 - L1M2c LINE L1 -5023 2186 240 235 229 21 52 chr3 97325607 97325703 -120711455 - L1M2c LINE L1 -6754 455 363 351 298 140 44 chr3 97326005 97326233 -120710925 - MIR SINE MIR 0 262 13 350 247 115 12 chr3 97328098 97328472 -120708686 - MER113 DNA MER1_type? -73 448 2 267 103 0 0 chr3 97329071 97329110 -120708048 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 252 0 0 0 chr3 97330209 97330237 -120706921 + (A)n Simple_repeat Simple_repeat 1 28 0 24 53 0 0 chr3 97330298 97330336 -120706822 + AT_rich Low_complexity Low_complexity 1 38 0 1704 132 0 39 chr3 97331652 97331963 -120705195 - AluSq SINE Alu -14 299 1 1003 157 38 27 chr3 97332474 97332659 -120704499 + MSTA LTR MaLR 242 428 0 377 270 80 57 chr3 97332659 97333094 -120704064 - L1ME LINE L1 -461 5709 5258 446 228 67 0 chr3 97333614 97333794 -120703364 - AluSq SINE Alu -16 297 106 1680 147 8 0 chr3 97334355 97334620 -120702538 + AluSx SINE Alu 2 268 -44 602 333 60 35 chr3 97334903 97335269 -120701889 - L2 LINE L2 -3 3310 2936 26 0 0 0 chr3 97336850 97336876 -120700282 + AT_rich Low_complexity Low_complexity 1 26 0 478 264 168 0 chr3 97337674 97337829 -120699329 - MER5A DNA MER1_type 0 189 9 429 321 36 0 chr3 97338009 97338146 -120699012 - MIR3 SINE MIR -37 171 30 354 328 72 11 chr3 97339034 97339214 -120697944 - MIR SINE MIR -70 192 2 308 206 0 10 chr3 97339865 97339962 -120697196 + (CCG)n Simple_repeat Simple_repeat 2 97 0 285 167 0 0 chr3 97341176 97341230 -120695928 + A-rich Low_complexity Low_complexity 2 55 0 231 36 0 0 chr3 97342482 97342510 -120694648 + (TG)n Simple_repeat Simple_repeat 1 28 0 234 0 0 0 chr3 97343012 97343038 -120694120 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 219 36 0 0 chr3 97344428 97344456 -120692702 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 21 36 0 0 chr3 97347338 97347366 -120689792 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 97347902 97347923 -120689235 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr3 97350916 97350939 -120686219 + (T)n Simple_repeat Simple_repeat 1 23 0 335 292 77 8 chr3 97352938 97353068 -120684090 + MIR3 SINE MIR 16 154 -54 438 218 148 28 chr3 97353608 97353750 -120683408 - L2 LINE L2 0 3313 3155 189 94 0 0 chr3 97353752 97353784 -120683374 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 1899 136 7 0 chr3 97353798 97354084 -120683074 - AluSx SINE Alu -24 288 1 24 53 0 0 chr3 97354846 97354884 -120682274 + AT_rich Low_complexity Low_complexity 1 38 0 21 57 0 0 chr3 97355326 97355361 -120681797 + AT_rich Low_complexity Low_complexity 1 35 0 26 50 0 0 chr3 97357180 97357220 -120679938 + AT_rich Low_complexity Low_complexity 1 40 0 330 303 69 40 chr3 97359038 97359213 -120677945 + L2 LINE L2 3134 3313 0 269 327 92 33 chr3 97359811 97359964 -120677194 + MIR3 SINE MIR 22 183 -25 211 335 56 34 chr3 97360458 97360637 -120676521 + L3b LINE CR1 1207 1389 -194 342 333 54 12 chr3 97361563 97361731 -120675427 + MIR SINE MIR 80 254 -8 2482 37 0 0 chr3 97361849 97362147 -120675011 - L1PA2 LINE L1 -1 6154 5857 212 200 0 53 chr3 97362480 97362575 -120674583 + CT-rich Low_complexity Low_complexity 3 92 0 303 28 0 0 chr3 97363574 97363610 -120673548 + (TA)n Simple_repeat Simple_repeat 2 37 0 2072 110 0 13 chr3 97363610 97363918 -120673240 - AluY SINE Alu -7 304 1 32 0 0 0 chr3 97364318 97364350 -120672808 + AT_rich Low_complexity Low_complexity 1 32 0 288 0 0 0 chr3 97364920 97364952 -120672206 + (CA)n Simple_repeat Simple_repeat 2 33 0 261 0 0 0 chr3 97365228 97365257 -120671901 + (A)n Simple_repeat Simple_repeat 1 29 0 1778 29 0 0 chr3 97367426 97367635 -120669523 + L1PA3 LINE L1 5944 6152 -3 2065 68 0 0 chr3 97367676 97367949 -120669209 + AluSp SINE Alu 36 308 0 410 73 0 0 chr3 97368055 97368110 -120669048 - AluY SINE Alu -51 260 206 240 333 33 0 chr3 97369788 97369878 -120667280 - L2 LINE L2 -2 3311 3219 367 307 29 7 chr3 97370573 97370713 -120666445 + MIR SINE MIR 119 261 -1 21 0 0 0 chr3 97371165 97371186 -120665972 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 97371199 97371220 -120665938 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr3 97371279 97371321 -120665837 + AT_rich Low_complexity Low_complexity 1 42 0 34 0 0 0 chr3 97371348 97371382 -120665776 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr3 97371482 97371512 -120665646 + AT_rich Low_complexity Low_complexity 1 30 0 3734 158 106 2 chr3 97372392 97373148 -120664010 + L1MC1 LINE L1 5448 6333 0 1967 108 0 0 chr3 97373246 97373515 -120663643 + AluSc SINE Alu 27 295 -14 1908 136 3 13 chr3 97375618 97375927 -120661231 + AluSg SINE Alu 1 306 -4 298 295 164 0 chr3 97376380 97376502 -120660656 + MIR SINE MIR 49 190 -72 24 32 0 0 chr3 97378470 97378501 -120658657 + AT_rich Low_complexity Low_complexity 1 31 0 3459 186 11 13 chr3 97380062 97380690 -120656468 + MER82 DNA MER2_type 26 652 -1 472 315 0 55 chr3 97380773 97380938 -120656220 - L3 LINE CR1 -5 1572 1417 318 50 0 0 chr3 97380983 97381023 -120656135 + (TC)n Simple_repeat Simple_repeat 2 41 0 1296 177 0 58 chr3 97381025 97381268 -120655890 - AluJo SINE Alu -52 260 32 183 222 0 0 chr3 97381617 97381662 -120655496 + (TG)n Simple_repeat Simple_repeat 2 46 0 206 274 16 0 chr3 97381662 97381724 -120655434 + (TA)n Simple_repeat Simple_repeat 1 63 0 280 131 16 16 chr3 97382208 97382269 -120654889 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 184 267 160 0 chr3 97382459 97382534 -120654624 + MIR SINE MIR 110 196 -66 26 30 0 0 chr3 97382676 97382709 -120654449 + AT_rich Low_complexity Low_complexity 1 33 0 1652 184 0 31 chr3 97383646 97383967 -120653191 - AluJo SINE Alu -1 311 1 207 281 12 49 chr3 97384706 97384788 -120652370 + MIR SINE MIR 74 152 -110 28 0 0 0 chr3 97385038 97385066 -120652092 + AT_rich Low_complexity Low_complexity 1 28 0 189 331 13 64 chr3 97385616 97385773 -120651385 - L2 LINE L2 -502 2812 2664 801 245 71 0 chr3 97386033 97386229 -120650929 - MER58A DNA MER1_type -6 218 9 207 0 0 0 chr3 97387288 97387311 -120649847 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 666 233 119 20 chr3 97388151 97388353 -120648805 - MER58A DNA MER1_type -2 222 1 21 0 0 0 chr3 97389613 97389634 -120647524 + AT_rich Low_complexity Low_complexity 1 21 0 385 330 78 0 chr3 97390242 97390357 -120646801 + MIR3 SINE MIR 37 160 -48 1900 149 0 0 chr3 97390455 97390799 -120646359 + AluSx SINE Alu 1 344 0 2598 45 0 3 chr3 97391723 97392033 -120645125 - AluY SINE Alu 0 311 3 21 36 0 0 chr3 97392333 97392361 -120644797 + AT_rich Low_complexity Low_complexity 1 28 0 839 176 167 65 chr3 97392522 97392767 -120644391 + AluJo SINE Alu 37 306 -6 34 24 0 0 chr3 97393346 97393387 -120643771 + AT_rich Low_complexity Low_complexity 1 41 0 24 91 0 0 chr3 97393586 97393652 -120643506 + AT_rich Low_complexity Low_complexity 1 66 0 23 0 0 0 chr3 97394009 97394032 -120643126 + AT_rich Low_complexity Low_complexity 1 23 0 311 237 184 13 chr3 97394581 97394657 -120642501 + MER44D DNA MER2_type 4 362 -247 231 305 0 30 chr3 97394689 97394952 -120642206 + (TTATA)n Simple_repeat Simple_repeat 1 254 0 1149 131 0 179 chr3 97395131 97395444 -120641714 + MER44D DNA MER2_type 353 609 0 446 218 275 0 chr3 97395471 97395613 -120641545 - MLT1F1 LTR MaLR -75 492 312 302 294 112 21 chr3 97395651 97395794 -120641364 - MLT1F1 LTR MaLR -381 161 6 318 233 0 0 chr3 97395959 97396045 -120641113 + (TA)n Simple_repeat Simple_repeat 1 86 0 1991 158 0 0 chr3 97397383 97397694 -120639464 + AluSx SINE Alu 2 312 0 232 379 62 12 chr3 97399045 97399206 -120637952 + MIR SINE MIR 3 171 -91 1576 89 107 4 chr3 97399263 97399488 -120637670 - AluSx SINE Alu -26 286 39 25 0 0 0 chr3 97399635 97399660 -120637498 + AT_rich Low_complexity Low_complexity 1 25 0 433 279 177 0 chr3 97399667 97399814 -120637344 - MLT1J2 LTR MaLR -4 446 274 396 258 8 67 chr3 97400013 97400075 -120637083 - MER81 DNA DNA -1 113 60 1758 173 3 3 chr3 97400075 97400376 -120636782 + AluJb SINE Alu 4 304 -8 396 258 8 67 chr3 97400376 97400433 -120636725 - MER81 DNA DNA -54 60 1 351 86 29 14 chr3 97401605 97401675 -120635483 + (TG)n Simple_repeat Simple_repeat 2 72 0 874 178 0 30 chr3 97401854 97402023 -120635135 + AluSg/x SINE Alu 149 312 0 2353 95 0 6 chr3 97402364 97402679 -120634479 + AluSq SINE Alu 1 313 0 558 340 5 16 chr3 97405126 97405320 -120631838 - MIR SINE MIR -70 192 1 21 36 0 0 chr3 97405451 97405479 -120631679 + AT_rich Low_complexity Low_complexity 1 28 0 220 314 29 29 chr3 97406708 97406813 -120630345 - MIR3 SINE MIR -14 194 90 22 0 0 0 chr3 97407083 97407105 -120630053 + AT_rich Low_complexity Low_complexity 1 22 0 2231 101 10 0 chr3 97407974 97408282 -120628876 - AluY SINE Alu 0 311 1 26 30 0 0 chr3 97408344 97408377 -120628781 + AT_rich Low_complexity Low_complexity 1 33 0 22 80 0 0 chr3 97408411 97408461 -120628697 + AT_rich Low_complexity Low_complexity 1 50 0 243 281 139 44 chr3 97408527 97408731 -120628427 - MIR SINE MIR 0 262 41 325 345 41 32 chr3 97408945 97409170 -120627988 - MIR SINE MIR -30 232 7 214 383 37 12 chr3 97409226 97409388 -120627770 - MIR SINE MIR -16 246 81 28 48 0 0 chr3 97410010 97410052 -120627106 + AT_rich Low_complexity Low_complexity 1 42 0 907 301 62 33 chr3 97411733 97412215 -120624943 - LTR33 LTR ERVL 0 521 26 2266 45 0 21 chr3 97412373 97412691 -120624467 - AluY SINE Alu 0 312 1 21 57 0 0 chr3 97413389 97413424 -120623734 + AT_rich Low_complexity Low_complexity 1 35 0 6109 143 32 22 chr3 97414847 97415662 -120621496 - L1MA3 LINE L1 0 6305 5468 2117 123 3 10 chr3 97415662 97415972 -120621186 - AluSg SINE Alu -2 308 1 6109 143 32 22 chr3 97415972 97416674 -120620484 - L1MA3 LINE L1 -837 5468 4774 23 54 0 0 chr3 97417195 97417232 -120619926 + AT_rich Low_complexity Low_complexity 1 37 0 412 74 0 0 chr3 97417437 97417491 -120619667 + MADE1 DNA Mariner 1 54 -26 320 148 0 0 chr3 97417537 97417591 -120619567 + MADE1 DNA Mariner 27 80 0 2104 99 3 56 chr3 97417741 97418064 -120619094 + AluSq SINE Alu 1 306 -7 263 291 87 70 chr3 97419096 97419268 -120617890 + MIR SINE MIR 82 256 -6 197 266 63 76 chr3 97419381 97419460 -120617698 - MER5A DNA MER1_type -94 95 18 253 326 22 11 chr3 97419460 97419552 -120617606 + MIR SINE MIR 15 107 -155 206 143 29 0 chr3 97419902 97419937 -120617221 + GA-rich Low_complexity Low_complexity 2 37 0 1335 119 5 0 chr3 97419949 97420143 -120617015 - AluSq SINE Alu -89 224 30 212 188 0 21 chr3 97421200 97421248 -120615910 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 853 241 45 99 chr3 97423657 97424230 -120612928 - MER34 LTR ERV1 0 542 1 1269 209 36 33 chr3 97424269 97424571 -120612587 + AluJo SINE Alu 1 303 -9 252 143 0 0 chr3 97425646 97425688 -120611470 + (T)n Simple_repeat Simple_repeat 1 42 0 268 282 28 42 chr3 97426422 97426564 -120610594 + Charlie7 DNA MER1_type 2468 2607 -5 186 43 0 0 chr3 97427187 97427210 -120609948 + (T)n Simple_repeat Simple_repeat 1 23 0 24 53 0 0 chr3 97427531 97427569 -120609589 + AT_rich Low_complexity Low_complexity 1 38 0 183 336 179 7 chr3 97428426 97428566 -120608592 - MIR SINE MIR -13 249 86 261 345 110 58 chr3 97429473 97430148 -120607010 - L2 LINE L2 -831 2483 1774 1982 124 0 3 chr3 97430199 97430520 -120606638 - AluSg SINE Alu 0 321 2 748 347 126 17 chr3 97434060 97434657 -120602501 + L3 LINE CR1 911 1572 -5 180 77 0 0 chr3 97436646 97436672 -120600486 - MER5C DNA MER1_type -298 26 1 * 480 269 50 8 chr3 97436672 97436781 -120600377 + MER5A DNA MER1_type 41 154 -35 268 280 40 40 chr3 97437515 97437615 -120599543 + MIR SINE MIR 160 259 -3 329 301 27 66 chr3 97437731 97437914 -120599244 + MER5A DNA MER1_type 14 189 0 23 33 0 0 chr3 97438290 97438320 -120598838 + AT_rich Low_complexity Low_complexity 1 30 0 234 156 0 0 chr3 97439179 97439224 -120597934 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 2183 116 3 3 chr3 97439305 97439616 -120597542 - AluSp SINE Alu -2 311 1 1934 99 0 0 chr3 97439874 97440136 -120597022 + AluY SINE Alu 46 307 -4 23 0 0 0 chr3 97440178 97440201 -120596957 + AT_rich Low_complexity Low_complexity 1 23 0 2114 151 34 14 chr3 97440393 97440750 -120596408 + THE1B LTR MaLR 1 364 0 205 26 26 51 chr3 97440986 97441025 -120596133 + (TTTTA)n Simple_repeat Simple_repeat 4 41 0 1904 104 19 4 chr3 97441028 97441298 -120595860 - AluSx SINE Alu -38 274 1 308 278 136 12 chr3 97441646 97441869 -120595289 + L1 LINE L1 4214 4458 -1688 345 109 0 0 chr3 97442883 97442947 -120594211 + (TC)n Simple_repeat Simple_repeat 1 64 0 297 89 0 0 chr3 97442942 97442987 -120594171 + (CA)n Simple_repeat Simple_repeat 1 45 0 * 30 0 0 0 chr3 97443419 97443449 -120593709 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr3 97443533 97443565 -120593593 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr3 97444009 97444039 -120593119 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr3 97444143 97444171 -120592987 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr3 97448047 97448070 -120589088 + AT_rich Low_complexity Low_complexity 1 23 0 237 33 0 0 chr3 97448151 97448181 -120588977 + (TG)n Simple_repeat Simple_repeat 1 30 0 235 222 0 0 chr3 97449613 97449676 -120587482 + T-rich Low_complexity Low_complexity 1 63 0 26 30 0 0 chr3 97450117 97450150 -120587008 + AT_rich Low_complexity Low_complexity 1 33 0 1934 122 11 0 chr3 97451582 97451914 -120585244 + AluY SINE Alu 1 335 0 281 330 0 11 chr3 97452076 97452167 -120584991 + GA-rich Low_complexity Low_complexity 1 90 0 28 29 0 0 chr3 97452824 97452859 -120584299 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr3 97452990 97453029 -120584129 + AT_rich Low_complexity Low_complexity 1 39 0 21 71 0 0 chr3 97453590 97453632 -120583526 + AT_rich Low_complexity Low_complexity 1 42 0 340 269 0 67 chr3 97454333 97454452 -120582706 + L2 LINE L2 2687 2797 -517 1345 194 123 31 chr3 97454453 97454875 -120582283 - Charlie5 DNA MER1_type 0 2623 2163 382 238 82 8 chr3 97454847 97454969 -120582189 - Charlie5 DNA MER1_type -2481 131 1 * 1050 312 43 35 chr3 97454984 97455474 -120581684 + L2 LINE L2 2818 3311 -2 180 338 194 22 chr3 97455626 97455765 -120581393 + MIR3 SINE MIR 25 187 -21 489 332 104 5 chr3 97456954 97457165 -120579993 - MIR SINE MIR -26 236 5 334 0 43 0 chr3 97457175 97457221 -120579937 + (TG)n Simple_repeat Simple_repeat 1 48 0 2062 110 3 14 chr3 97457226 97457518 -120579640 - AluSx SINE Alu -23 289 1 1961 137 0 0 chr3 97457561 97457872 -120579286 + AluSx SINE Alu 1 311 0 23 54 0 0 chr3 97458437 97458474 -120578684 + AT_rich Low_complexity Low_complexity 1 37 0 183 80 0 0 chr3 97459543 97459568 -120577590 + (TTTC)n Simple_repeat Simple_repeat 3 27 0 22 56 0 0 chr3 97459960 97459996 -120577162 + AT_rich Low_complexity Low_complexity 1 36 0 190 306 28 14 chr3 97460142 97460214 -120576944 - L3 LINE CR1 -1093 484 412 23 33 0 0 chr3 97460565 97460595 -120576563 + AT_rich Low_complexity Low_complexity 1 30 0 29 28 0 0 chr3 97461676 97461712 -120575446 + AT_rich Low_complexity Low_complexity 1 36 0 277 270 61 74 chr3 97462849 97462997 -120574161 - MIR SINE MIR -56 206 61 216 161 74 0 chr3 97463933 97464014 -120573144 + (TATATG)n Simple_repeat Simple_repeat 6 92 0 1117 163 148 7 chr3 97465347 97465617 -120571541 + MER33 DNA MER1_type 3 310 -14 2399 187 34 21 chr3 97465815 97466402 -120570756 - L1MA7 LINE L1 -7 6284 5732 2014 129 10 0 chr3 97467381 97467676 -120569482 - AluSx SINE Alu -10 302 5 24 53 0 0 chr3 97469954 97469992 -120567166 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr3 97470113 97470134 -120567024 + AT_rich Low_complexity Low_complexity 1 21 0 2023 124 9 27 chr3 97471498 97471828 -120565330 + MER1B DNA MER1_type 16 339 0 23 0 0 0 chr3 97472394 97472417 -120564741 + AT_rich Low_complexity Low_complexity 1 23 0 251 336 0 55 chr3 97473308 97473418 -120563740 + L2 LINE L2 3169 3272 0 216 296 158 61 chr3 97473541 97473788 -120563370 + L2 LINE L2 2586 2856 -458 1747 87 139 23 chr3 97474110 97474376 -120562782 + AluSc SINE Alu 1 297 -12 21 82 0 0 chr3 97474478 97474527 -120562631 + AT_rich Low_complexity Low_complexity 1 49 0 22 56 0 0 chr3 97475132 97475168 -120561990 + AT_rich Low_complexity Low_complexity 1 36 0 5357 36 0 0 chr3 97477870 97478512 -120558646 - L1PA4 LINE L1 0 6155 5514 335 329 71 29 chr3 97479236 97479376 -120557782 + MIR3 SINE MIR 38 183 -25 1222 194 8 13 chr3 97479515 97479752 -120557406 + MER8 DNA MER2_type 4 239 0 2225 113 0 0 chr3 97480341 97480641 -120556517 - AluSx SINE Alu -12 300 1 2025 128 0 0 chr3 97481845 97482153 -120555005 + AluSg SINE Alu 1 308 0 28 0 0 0 chr3 97482934 97482962 -120554196 + AT_rich Low_complexity Low_complexity 1 28 0 8958 32 1 20 chr3 97484888 97486013 -120551145 - L1PA3 LINE L1 -962 5184 4082 7264 30 4 0 chr3 97486008 97486994 -120550164 + L1PA3 LINE L1 5183 6170 0 * 207 360 12 0 chr3 97487372 97487458 -120549700 - L2 LINE L2 0 3272 3186 1762 179 20 83 chr3 97488211 97488423 -120548735 + L1MA1 LINE L1 5378 5602 -581 955 84 42 6 chr3 97488423 97488590 -120548568 + CT-rich Low_complexity Low_complexity 2 174 0 1690 141 4 11 chr3 97488590 97488860 -120548298 - AluSq SINE Alu -32 281 14 1762 179 20 83 chr3 97488860 97489092 -120548066 + L1MA1 LINE L1 5600 5795 -388 * 2381 186 94 0 chr3 97489072 97489571 -120547587 + L1MB3 LINE L1 5637 6182 -1 232 118 20 20 chr3 97490225 97490276 -120546882 + GA-rich Low_complexity Low_complexity 2 52 0 207 114 0 0 chr3 97491120 97491155 -120546003 + (GA)n Simple_repeat Simple_repeat 2 36 0 1962 113 69 6 chr3 97492348 97492668 -120544490 + L1MA1 LINE L1 5858 6197 -105 249 218 35 11 chr3 97493749 97493836 -120543322 + (TA)n Simple_repeat Simple_repeat 1 89 0 21 0 0 0 chr3 97494517 97494538 -120542620 + AT_rich Low_complexity Low_complexity 1 21 0 546 255 7 18 chr3 97495500 97495651 -120541507 + MIR SINE MIR 10 153 -62 319 342 11 24 chr3 97496370 97496510 -120540648 + MIR SINE MIR 1 141 -67 1946 128 7 0 chr3 97496915 97497233 -120539925 + AluSx SINE Alu 1 320 0 22 35 0 0 chr3 97497291 97497320 -120539838 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr3 97497493 97497530 -120539628 + AT_rich Low_complexity Low_complexity 1 37 0 1806 130 3 81 chr3 97497792 97498114 -120539044 + AluSx SINE Alu 9 305 -7 24 0 0 0 chr3 97498191 97498215 -120538943 + AT_rich Low_complexity Low_complexity 1 24 0 28 29 0 0 chr3 97499115 97499150 -120538008 + AT_rich Low_complexity Low_complexity 1 35 0 2420 112 31 8 chr3 97499206 97499562 -120537596 - THE1B LTR MaLR 0 364 1 2160 99 3 0 chr3 97499603 97499919 -120537239 - AluSp SINE Alu 0 317 1 997 137 55 33 chr3 97500001 97500184 -120536974 + AluJb SINE Alu 1 187 -125 3849 90 0 5 chr3 97500185 97500740 -120536418 - L1P LINE L1 -1311 4835 4284 6503 67 20 1 chr3 97500740 97501700 -120535458 + L1PA7 LINE L1 5175 6151 -3 214 270 0 0 chr3 97503480 97503543 -120533615 + (TA)n Simple_repeat Simple_repeat 2 64 0 228 200 0 0 chr3 97504551 97504601 -120532557 + (CATATA)n Simple_repeat Simple_repeat 4 53 0 822 214 86 129 chr3 97504717 97505128 -120532030 - MER67D LTR ERV1 -4 510 142 266 227 91 0 chr3 97505128 97505194 -120531964 - MER47A DNA MER2_type 0 366 295 1387 181 38 42 chr3 97505197 97505485 -120531673 + AluJo SINE Alu 6 292 -20 1269 184 44 54 chr3 97505515 97505830 -120531328 - MER47A DNA MER2_type -54 312 1 784 158 41 0 chr3 97505830 97505971 -120531187 - MER67D LTR ERV1 -367 147 1 1517 171 34 14 chr3 97506240 97506533 -120530625 - AluJb SINE Alu -13 299 1 365 326 71 15 chr3 97507129 97507325 -120529833 - L2 LINE L2 -15 3298 3092 903 196 20 25 chr3 97508773 97508972 -120528186 - MER3 DNA MER1_type -10 199 2 230 269 21 86 chr3 97510462 97510555 -120526603 + MER5B DNA MER1_type 2 88 -90 2171 105 14 0 chr3 97511772 97512067 -120525091 + AluSq SINE Alu 2 300 -13 26 0 0 0 chr3 97513491 97513517 -120523641 + AT_rich Low_complexity Low_complexity 1 26 0 5485 113 82 111 chr3 97513711 97515301 -120521857 - pTR5 LTR ERV1 0 2438 738 27 62 0 0 chr3 97515656 97515704 -120521454 + AT_rich Low_complexity Low_complexity 1 48 0 21 57 0 0 chr3 97515923 97515958 -120521200 + AT_rich Low_complexity Low_complexity 1 35 0 207 0 0 0 chr3 97517206 97517229 -120519929 + (TG)n Simple_repeat Simple_repeat 2 24 0 382 296 89 0 chr3 97521425 97521594 -120515564 - MIR SINE MIR -34 228 45 991 254 12 24 chr3 97522045 97522297 -120514861 + MIR SINE MIR 8 256 -6 21 0 0 0 chr3 97522471 97522492 -120514666 + AT_rich Low_complexity Low_complexity 1 21 0 338 271 125 21 chr3 97522733 97522877 -120514281 - MLT1J1 LTR MaLR -39 407 249 392 113 127 0 chr3 97522969 97523040 -120514118 - MADE1 DNA Mariner 0 80 1 1453 205 32 21 chr3 97524073 97524356 -120512802 + AluJo SINE Alu 3 288 -24 969 293 106 16 chr3 97524588 97525109 -120512049 + L2 LINE L2 2594 3183 -130 282 116 0 0 chr3 97525109 97525152 -120512006 + (CA)n Simple_repeat Simple_repeat 2 44 0 969 293 106 16 chr3 97525152 97525200 -120511958 + L2 LINE L2 3183 3225 -88 2132 136 0 3 chr3 97525200 97525510 -120511648 + AluSx SINE Alu 2 310 -2 613 287 91 10 chr3 97526819 97527028 -120510130 + MIR SINE MIR 2 227 -35 2404 57 0 13 chr3 97527861 97528176 -120508982 + AluY SINE Alu 1 311 0 25 95 0 0 chr3 97528710 97528784 -120508374 + AT_rich Low_complexity Low_complexity 1 74 0 1980 158 90 34 chr3 97529452 97529863 -120507295 - Tigger2a DNA MER2_type 0 434 1 266 225 99 9 chr3 97529863 97529974 -120507184 - L1M4 LINE L1 -920 5226 5106 21 57 0 0 chr3 97529974 97530009 -120507149 + AT_rich Low_complexity Low_complexity 1 35 0 625 157 10 0 chr3 97530037 97530139 -120507019 + MSTD LTR MaLR 1 103 -325 * 821 172 13 13 chr3 97530133 97530290 -120506868 + MSTD LTR MaLR 240 396 0 2080 75 34 38 chr3 97530315 97530608 -120506550 + AluY SINE Alu 1 292 -19 1803 141 7 28 chr3 97531493 97531827 -120505331 + AluSg SINE Alu 1 328 0 652 261 43 5 chr3 97532517 97532701 -120504457 - MLT1A1 LTR MaLR 0 365 175 2376 57 3 35 chr3 97533546 97533862 -120503296 + AluY SINE Alu 1 306 -5 20851 43 0 18 chr3 97533942 97537511 -120499647 + L1PA3 LINE L1 1 3654 -2492 12091 31 1 1 chr3 97537511 97539725 -120497433 + L1PA3 LINE L1 3942 6155 0 35 0 0 0 chr3 97539725 97539760 -120497398 + AT_rich Low_complexity Low_complexity 1 35 0 2623 188 73 3 chr3 97540079 97540643 -120496515 - LTR26 LTR ERV1 0 603 1 219 211 0 35 chr3 97540880 97540937 -120496221 + (CATA)n Simple_repeat Simple_repeat 2 56 0 318 300 36 53 chr3 97541399 97541646 -120495512 - L1M4 LINE L1 -1388 4758 4516 1836 149 30 0 chr3 97542606 97542908 -120494250 + AluSq SINE Alu 1 311 -2 922 153 30 85 chr3 97544631 97544867 -120492291 - L1MB8 LINE L1 -11 6167 5945 219 139 0 0 chr3 97545820 97545856 -120491302 + (TG)n Simple_repeat Simple_repeat 2 37 0 225 350 12 12 chr3 97548435 97548515 -120488643 - MIR SINE MIR -180 82 3 183 80 0 0 chr3 97548770 97548795 -120488363 + (TA)n Simple_repeat Simple_repeat 2 26 0 1758 157 4 0 chr3 97548922 97549225 -120487933 - AluSx SINE Alu 0 304 1 1578 151 40 22 chr3 97549813 97549989 -120487169 - AluSq SINE Alu 0 311 126 344 22 0 22 chr3 97549989 97550035 -120487123 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 1578 151 40 22 chr3 97550035 97550164 -120486994 - AluSq SINE Alu -185 126 1 1682 146 8 0 chr3 97550364 97550631 -120486527 + AluSx SINE Alu 5 273 -39 1842 144 21 0 chr3 97551213 97551497 -120485661 - AluSx SINE Alu -16 296 7 186 352 28 56 chr3 97553045 97553187 -120483971 + MIR3 SINE MIR 23 160 -48 202 288 137 20 chr3 97553483 97553629 -120483529 - L2 LINE L2 -493 2821 2659 354 90 97 7 chr3 97553695 97553839 -120483319 + (TA)n Simple_repeat Simple_repeat 1 157 0 1304 99 0 0 chr3 97553868 97554040 -120483118 - AluY SINE Alu -15 296 125 767 311 111 3 chr3 97554813 97554868 -120482290 - L3 LINE CR1 -2 1575 1527 188 67 33 0 chr3 97554868 97554898 -120482260 + (CA)n Simple_repeat Simple_repeat 1 31 0 767 311 111 3 chr3 97554898 97555157 -120482001 - L3 LINE CR1 -50 1527 1227 246 156 0 0 chr3 97555369 97555414 -120481744 + (TA)n Simple_repeat Simple_repeat 1 45 0 3276 183 91 50 chr3 97555822 97556649 -120480509 + L1MB3 LINE L1 5321 6181 -2 1169 0 0 0 chr3 97556790 97556921 -120480237 - AluYa5/8 SINE Alu -3 307 177 22 35 0 0 chr3 97558218 97558247 -120478911 + AT_rich Low_complexity Low_complexity 1 29 0 308 281 110 72 chr3 97558327 97558619 -120478539 + L1MEc LINE L1 2093 2395 -4001 27 29 0 0 chr3 97559142 97559176 -120477982 + AT_rich Low_complexity Low_complexity 1 34 0 300 297 0 0 chr3 97560803 97560877 -120476281 - L2 LINE L2 -13 3300 3227 25 31 0 0 chr3 97560966 97560998 -120476160 + AT_rich Low_complexity Low_complexity 1 32 0 1870 162 0 0 chr3 97561105 97561408 -120475750 + AluJb SINE Alu 9 311 -1 29 60 0 0 chr3 97562673 97562723 -120474435 + AT_rich Low_complexity Low_complexity 1 50 0 43 35 0 0 chr3 97562808 97562865 -120474293 + AT_rich Low_complexity Low_complexity 1 57 0 319 207 37 0 chr3 97562957 97563039 -120474119 + L1MD3 LINE L1 7189 7273 -722 457 237 18 9 chr3 97563041 97563155 -120474003 + MLT1F1 LTR MaLR 2 116 -451 1064 202 157 30 chr3 97563156 97563487 -120473671 + L1MD3 LINE L1 7401 7773 -222 527 223 39 0 chr3 97563488 97563618 -120473540 + L1MD3 LINE L1 7852 7986 -9 188 340 124 32 chr3 97564908 97565190 -120471968 - L2 LINE L2 -1232 2082 1775 229 343 48 29 chr3 97565356 97565461 -120471697 - L2 LINE L2 -15 3298 3192 815 255 34 0 chr3 97567434 97567638 -120469520 - MER20 DNA MER1_type 0 219 9 296 302 137 0 chr3 97567887 97568026 -120469132 - MIR SINE MIR -28 234 77 372 285 0 28 chr3 97568716 97568860 -120468298 + MER104 DNA Tc2 29 168 -12 23 54 0 0 chr3 97568879 97568916 -120468242 + AT_rich Low_complexity Low_complexity 1 37 0 376 293 97 72 chr3 97569079 97569345 -120467813 + L1ME3A LINE L1 1863 2140 -4256 2117 118 0 3 chr3 97569345 97569642 -120467516 + AluSq SINE Alu 1 296 -17 376 293 97 72 chr3 97569642 97569696 -120467462 + L1ME3A LINE L1 2140 2191 -4205 783 282 57 58 chr3 97570316 97570605 -120466553 + L1ME3A LINE L1 5484 5778 -516 2146 155 87 20 chr3 97570605 97571006 -120466152 - MSTA LTR MaLR 0 428 1 783 282 57 58 chr3 97571006 97571207 -120465951 + L1ME3A LINE L1 5778 5978 -316 25 51 0 0 chr3 97571209 97571248 -120465910 + AT_rich Low_complexity Low_complexity 1 39 0 48 32 0 0 chr3 97571604 97571666 -120465492 + AT_rich Low_complexity Low_complexity 1 62 0 396 321 96 60 chr3 97572028 97572246 -120464912 + L2 LINE L2 3047 3272 0 22 56 0 0 chr3 97572375 97572411 -120464747 + AT_rich Low_complexity Low_complexity 1 36 0 230 214 14 14 chr3 97572600 97572670 -120464488 - L1MC/D LINE L1 -1883 5925 5856 585 212 102 0 chr3 97572672 97572790 -120464368 + FAM SINE Alu 12 141 -44 810 295 94 10 chr3 97572793 97573091 -120464067 - L1MC4a LINE L1 -1948 5860 5538 3090 192 30 13 chr3 97573474 97574172 -120462986 + MER67C LTR ERV1 1 710 0 22 0 0 0 chr3 97576259 97576281 -120460877 + AT_rich Low_complexity Low_complexity 1 22 0 2066 130 0 3 chr3 97576329 97576637 -120460521 - AluSc SINE Alu -2 307 1 1660 139 56 21 chr3 97577153 97577440 -120459718 - AluSx SINE Alu -15 297 1 222 156 0 0 chr3 97578432 97578477 -120458681 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 225 219 0 0 chr3 97578513 97578586 -120458572 + (TATG)n Simple_repeat Simple_repeat 4 76 0 240 244 24 0 chr3 97578587 97578669 -120458489 + (TCTA)n Simple_repeat Simple_repeat 1 84 0 296 293 3 12 chr3 97578690 97578775 -120458383 - MIR3 SINE MIR -24 184 104 489 267 1 2 chr3 97579039 97579172 -120457986 - L1ME3A LINE L1 0 6164 6033 438 250 161 40 chr3 97579204 97579428 -120457730 - L1ME3A LINE L1 -236 5928 5678 25 31 0 0 chr3 97579641 97579673 -120457485 + AT_rich Low_complexity Low_complexity 1 32 0 227 148 74 0 chr3 97579714 97579768 -120457390 - LTR66 LTR ERVL -171 439 382 310 303 72 26 chr3 97580147 97580342 -120456816 + LTR33 LTR ERVL 304 507 -14 670 342 63 67 chr3 97581394 97582107 -120455051 + L2 LINE L2 2035 2744 -570 225 94 0 0 chr3 97582393 97582425 -120454733 + (TC)n Simple_repeat Simple_repeat 1 32 0 574 288 99 46 chr3 97584436 97584988 -120452170 + L1ME3A LINE L1 5317 5913 -257 22 0 0 0 chr3 97585736 97585758 -120451400 + AT_rich Low_complexity Low_complexity 1 22 0 591 40 0 0 chr3 97585849 97585924 -120451234 + L1PA5 LINE L1 6080 6154 0 1018 217 37 20 chr3 97586258 97586502 -120450656 - MLT1A1 LTR MaLR -5 360 113 1960 145 104 15 chr3 97586502 97586895 -120450263 + MSTA LTR MaLR 1 428 0 7095 161 14 44 chr3 97586897 97588512 -120448646 + MSTA-int LTR MaLR 3 1580 0 1898 170 96 10 chr3 97588512 97588906 -120448252 + MSTA LTR MaLR 1 428 0 297 140 232 65 chr3 97588906 97589005 -120448153 - MLT1A1 LTR MaLR -248 117 7 198 64 21 64 chr3 97589280 97589327 -120447831 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 216 350 43 34 chr3 97590065 97590182 -120446976 - L2 LINE L2 -4 3309 3192 711 301 47 8 chr3 97591236 97591492 -120445666 - ERVL LTR ERVL -1719 4045 3780 309 254 0 0 chr3 97591536 97591607 -120445551 + MER68 LTR ERV1 396 466 -96 244 281 91 25 chr3 97591614 97591735 -120445423 + L2 LINE L2 2638 2766 -548 13923 158 16 10 chr3 97591838 97591978 -120445180 - Tigger1 DNA MER2_type 0 2418 2280 1908 193 6 3 chr3 97591978 97592310 -120444848 - MER1B DNA MER1_type -1 336 4 13923 158 16 10 chr3 97592310 97594548 -120442610 - Tigger1 DNA MER2_type -138 2280 24 1723 157 15 0 chr3 97594606 97594948 -120442210 - AluJb SINE Alu 0 350 5 1317 179 25 113 chr3 97595049 97595461 -120441697 - MER67C LTR ERV1 -244 270 1 740 280 68 57 chr3 97595489 97595768 -120441390 + L2 LINE L2 2875 3156 -157 2396 120 25 6 chr3 97595862 97596219 -120440939 + THE1B LTR MaLR 1 364 0 236 313 50 10 chr3 97596253 97596352 -120440806 - MIR SINE MIR -95 167 65 239 338 0 0 chr3 97596528 97596608 -120440550 + L2 LINE L2 3193 3272 0 286 322 93 29 chr3 97596947 97597152 -120440006 + MLT1J2 LTR MaLR 223 440 -10 252 214 0 0 chr3 97597971 97598027 -120439131 + (CATA)n Simple_repeat Simple_repeat 1 56 0 1691 145 12 0 chr3 97598555 97598796 -120438362 + AluSx SINE Alu 35 278 -34 28 29 0 0 chr3 97599186 97599221 -120437937 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 97600497 97600520 -120436638 + AT_rich Low_complexity Low_complexity 1 23 0 779 266 67 45 chr3 97600644 97601371 -120435787 - L1MC4a LINE L1 -339 5823 5155 513 228 26 26 chr3 97601428 97601542 -120435616 + MLT1A2 LTR MaLR 1 114 -260 618 187 40 5 chr3 97601557 97601693 -120435465 - MLT1B LTR MaLR -4 370 259 3086 64 204 118 chr3 97601693 97602322 -120434836 + LTR12 LTR ERV1 13 695 -19 720 253 32 76 chr3 97602322 97602396 -120434762 - MLT1B LTR MaLR -83 307 231 2537 142 68 9 chr3 97602396 97602854 -120434304 + MER31A LTR ERV1 1 485 0 720 253 32 76 chr3 97602854 97603095 -120434063 - MLT1B LTR MaLR -159 231 6 264 100 0 0 chr3 97603152 97603192 -120433966 + (TC)n Simple_repeat Simple_repeat 2 41 0 706 238 44 17 chr3 97603225 97603406 -120433752 + MLT1A2 LTR MaLR 189 374 0 1991 149 36 28 chr3 97603631 97603987 -120433171 + THE1B LTR MaLR 1 359 -5 212 175 25 0 chr3 97604179 97604219 -120432939 - MER5A DNA MER1_type -86 103 63 399 314 96 19 chr3 97604361 97604632 -120432526 - L1MC4a LINE L1 -1595 4551 4260 525 281 21 47 chr3 97604925 97605117 -120432041 + Charlie1b DNA MER1_type 8 194 -329 589 200 68 47 chr3 97605194 97605384 -120431774 + Charlie1b DNA MER1_type 329 522 -1 297 319 32 0 chr3 97606052 97606209 -120430949 - L1MC4a LINE L1 -3568 2578 2417 1039 276 70 38 chr3 97606209 97606712 -120430446 - LTR40a LTR ERVL 0 519 1 1445 223 62 36 chr3 97607308 97607694 -120429464 + MSTD LTR MaLR 1 396 0 1641 191 30 15 chr3 97607712 97608048 -120429110 - MER2 DNA MER2_type 0 344 4 26 50 0 0 chr3 97608057 97608097 -120429061 + AT_rich Low_complexity Low_complexity 1 40 0 1305 276 80 49 chr3 97609172 97609747 -120427411 + MLT1E LTR MaLR 1 593 0 266 278 152 52 chr3 97611548 97611897 -120425261 - L1MC/D LINE L1 -2081 5727 5344 425 323 23 78 chr3 97611913 97612170 -120424988 - MLT1I LTR MaLR -13 396 154 300 170 74 7 chr3 97612495 97612630 -120424528 + (TA)n Simple_repeat Simple_repeat 1 144 0 195 139 0 0 chr3 97612761 97612797 -120424361 + (CA)n Simple_repeat Simple_repeat 2 37 0 2215 83 3 32 chr3 97612805 97613118 -120424040 + AluY SINE Alu 1 304 -7 29 0 0 0 chr3 97613753 97613782 -120423376 + AT_rich Low_complexity Low_complexity 1 29 0 1036 289 53 60 chr3 97614048 97614497 -120422661 + L1M4 LINE L1 11 456 -6403 1013 204 51 191 chr3 97614544 97615347 -120421811 + LTR8A LTR ERV1 30 720 -7 2576 250 96 46 chr3 97615375 97616639 -120420519 + L1M4 LINE L1 527 1841 -5014 2280 149 5 16 chr3 97616639 97617007 -120420151 + THE1B LTR MaLR 1 364 0 2576 250 96 46 chr3 97617007 97617089 -120420069 + L1M4 LINE L1 1841 1917 -4938 * 3718 247 49 35 chr3 97617085 97617809 -120419349 + L1M4 LINE L1 3714 4426 -2531 3078 50 0 0 chr3 97617809 97618192 -120418966 - L1PA4 LINE L1 -3 6152 5770 3718 247 49 35 chr3 97618192 97618339 -120418819 + L1M4 LINE L1 4426 4569 -2388 3663 110 21 107 chr3 97618339 97619066 -120418092 - MER4A LTR ERV1 0 664 1 3718 247 49 35 chr3 97619066 97619550 -120417608 + L1M4 LINE L1 4569 5094 -1863 2017 125 3 0 chr3 97619550 97619875 -120417283 + AluSx SINE Alu 1 326 0 3718 247 49 35 chr3 97619875 97619929 -120417229 + L1M4 LINE L1 5094 5146 -1811 1722 212 119 12 chr3 97619933 97620352 -120416806 + MLT2B1 LTR ERVL 1 464 -56 40902 65 3 3 chr3 97621191 97627321 -120409837 + L1PA5 LINE L1 15 6149 -5 1951 149 17 0 chr3 97627465 97627766 -120409392 - AluSx SINE Alu -4 308 3 216 0 0 0 chr3 97627782 97627806 -120409352 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 22 80 0 0 chr3 97628755 97628805 -120408353 + AT_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr3 97628960 97628983 -120408175 + AT_rich Low_complexity Low_complexity 1 23 0 303 224 0 0 chr3 97629042 97629118 -120408040 + (TATATG)n Simple_repeat Simple_repeat 2 77 0 289 313 50 10 chr3 97629514 97629613 -120407545 - MER5A DNA MER1_type -83 106 4 431 174 93 0 chr3 97630683 97630769 -120406389 - MIR SINE MIR -59 203 110 278 368 58 12 chr3 97630889 97631131 -120406027 - MERVL LTR ERVL -915 4570 4318 528 329 115 44 chr3 97631133 97631543 -120405615 - LTR16C LTR ERVL -6 485 47 26 64 0 0 chr3 97631663 97631710 -120405448 + AT_rich Low_complexity Low_complexity 1 47 0 392 289 72 82 chr3 97632075 97632452 -120404706 - MERVL LTR ERVL -1264 4221 3849 198 71 0 0 chr3 97633623 97633651 -120403507 + (T)n Simple_repeat Simple_repeat 1 28 0 304 376 13 19 chr3 97634386 97634543 -120402615 - MLT1K LTR MaLR -382 206 51 528 211 0 0 chr3 97634655 97634764 -120402394 - AluJb SINE Alu -1 311 203 1115 262 35 16 chr3 97634972 97635339 -120401819 - LTR55 LTR ERV -18 530 157 2013 132 27 0 chr3 97635677 97635852 -120401306 - AluSx SINE Alu -7 305 117 369 0 0 0 chr3 97635852 97635893 -120401265 + (TG)n Simple_repeat Simple_repeat 2 42 0 2013 132 27 0 chr3 97635893 97636013 -120401145 - AluSx SINE Alu -195 117 2 281 320 87 60 chr3 97636187 97636556 -120400602 + L2 LINE L2 2935 3313 0 3662 60 2 8 chr3 97636652 97637135 -120400023 + L1PA8 LINE L1 5693 6172 0 264 290 0 11 chr3 97637197 97637290 -120399868 - MIR SINE MIR -24 238 147 2185 121 0 0 chr3 97639411 97639709 -120397449 - AluSg SINE Alu -12 298 1 219 214 0 0 chr3 97639851 97639921 -120397237 + (TGAA)n Simple_repeat Simple_repeat 4 73 0 2077 120 7 3 chr3 97640032 97640340 -120396818 + AluY SINE Alu 3 311 0 7511 197 26 8 chr3 97640368 97641366 -120395792 - L1PA16 LINE L1 -10 6156 5177 2445 136 69 10 chr3 97641366 97641770 -120395388 - MSTA LTR MaLR 0 428 1 7511 197 26 8 chr3 97641770 97643399 -120393759 - L1PA16 LINE L1 -989 5177 3477 8845 177 13 8 chr3 97643415 97646090 -120391068 - L1PB1 LINE L1 -1 6150 3464 3122 219 20 1 chr3 97646089 97646850 -120390308 + L1PB1 LINE L1 2698 3472 -2674 * 4245 275 47 21 chr3 97646847 97648583 -120388575 - L1PB1 LINE L1 -2662 3484 1705 727 212 36 12 chr3 97648599 97648764 -120388394 - MSTB LTR MaLR 0 426 258 585 334 194 32 chr3 97649852 97650819 -120386339 - L2 LINE L2 -610 2704 1581 626 299 81 17 chr3 97651716 97652351 -120384807 + L1MEc LINE L1 2179 2830 -3385 5439 150 50 4 chr3 97652360 97653899 -120383259 - L1PA13 LINE L1 -6 6157 4538 285 287 147 14 chr3 97653903 97654331 -120382827 + L1MEc LINE L1 2819 3303 -2912 924 277 121 30 chr3 97654441 97655195 -120381963 + L1MEc LINE L1 3511 4353 -1862 270 277 21 11 chr3 97655274 97655368 -120381790 + L1MEc LINE L1 4552 4646 -1569 456 241 0 18 chr3 97655394 97655506 -120381652 - L1PB4 LINE L1 -12 6144 6035 255 230 310 0 chr3 97655834 97655921 -120381237 - L2 LINE L2 -9 3304 3191 1823 268 43 48 chr3 97657028 97657655 -120379503 - MLT1E3 LTR MaLR 0 624 1 238 29 0 29 chr3 97657732 97657767 -120379391 + MSTB LTR MaLR 1 34 -392 2006 206 34 24 chr3 97657768 97658181 -120378977 + MSTB LTR MaLR 10 426 0 588 172 26 46 chr3 97658845 97658982 -120378176 + L1MA5 LINE L1 6149 6284 -16 2225 117 31 14 chr3 97658982 97659334 -120377824 - THE1B LTR MaLR -4 360 3 588 172 26 46 chr3 97659334 97659347 -120377811 + L1MA5 LINE L1 6284 6296 -4 27 0 0 0 chr3 97659347 97659374 -120377784 + AT_rich Low_complexity Low_complexity 1 27 0 10161 202 34 60 chr3 97659374 97662365 -120374793 - L1MA3 LINE L1 -27 7697 4631 1187 247 7 7 chr3 97662365 97662652 -120374506 - AluJo SINE Alu -15 297 11 10161 202 34 60 chr3 97662652 97663290 -120373868 - L1MA3 LINE L1 -3093 4631 3978 5424 143 29 47 chr3 97663290 97664380 -120372778 - MER11C LTR ERVK 0 1071 1 10161 202 34 60 chr3 97664380 97664786 -120372372 - L1MA3 LINE L1 -3746 3978 3563 189 0 0 0 chr3 97664786 97664807 -120372351 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1862 148 0 10 chr3 97664809 97665099 -120372059 - AluSx SINE Alu -25 287 1 10161 202 34 60 chr3 97665099 97665436 -120371722 - L1MA3 LINE L1 -4162 3562 3270 211 145 65 0 chr3 97666617 97666679 -120370479 + (TTATA)n Simple_repeat Simple_repeat 1 66 0 443 270 62 10 chr3 97666828 97667058 -120370100 - LTR16A1 LTR ERVL 0 457 190 553 325 41 52 chr3 97667130 97667518 -120369640 - HERV16 LTR ERVL -1907 3857 3474 1579 333 66 22 chr3 97667671 97668627 -120368531 - HERV16 LTR ERVL -1905 3091 2256 1104 268 86 3 chr3 97668628 97668941 -120368217 - MER2 DNA MER2_type 0 345 7 391 317 0 0 chr3 97668991 97669092 -120368066 - HERV16 LTR ERVL -3429 2225 2125 1171 198 38 4 chr3 97669202 97669440 -120367718 - MLT1D LTR MaLR -2 503 258 829 334 39 34 chr3 97669581 97670144 -120367014 - HERV16 LTR ERVL -4428 568 3 667 332 43 36 chr3 97670146 97670592 -120366566 - LTR16A1 LTR ERVL 0 457 9 22 35 0 0 chr3 97671281 97671310 -120365848 + AT_rich Low_complexity Low_complexity 1 29 0 1271 232 77 44 chr3 97672050 97672265 -120364893 + MLT1B LTR MaLR 1 234 -156 360 0 0 0 chr3 97672265 97672305 -120364853 + (CA)n Simple_repeat Simple_repeat 2 41 0 1271 232 77 44 chr3 97672305 97672451 -120364707 + MLT1B LTR MaLR 234 374 -16 245 188 35 59 chr3 97673399 97673484 -120363674 - L1ME LINE L1 -271 5899 5817 3434 233 63 67 chr3 97673544 97674626 -120362532 - L1MB7 LINE L1 -40 6144 5059 1834 157 3 10 chr3 97674626 97674932 -120362226 - AluSx SINE Alu -8 304 1 3434 233 63 67 chr3 97674932 97675276 -120361882 - L1MB7 LINE L1 -1125 5059 4715 1464 188 0 26 chr3 97675276 97675542 -120361616 - AluJb SINE Alu -12 300 42 3434 233 63 67 chr3 97675542 97676773 -120360385 - L1MB7 LINE L1 -1469 4715 3502 21 0 0 0 chr3 97676798 97676819 -120360339 + AT_rich Low_complexity Low_complexity 1 21 0 332 309 98 45 chr3 97676875 97677217 -120359941 - L1MEd LINE L1 -4667 1977 1517 1376 284 135 11 chr3 97677269 97677808 -120359350 + MLT1E2 LTR MaLR 21 626 0 574 287 144 52 chr3 97677819 97678359 -120358799 - L1MEd LINE L1 -5042 1592 1003 180 0 0 0 chr3 97678718 97678738 -120358420 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4090 40 0 4 chr3 97678738 97679239 -120357919 - L1PA5 LINE L1 -11 6143 5645 4764 181 43 13 chr3 97679387 97681177 -120355981 - L1MA4 LINE L1 -9 6473 4627 4215 221 43 34 chr3 97681175 97681487 -120355671 - L1MA4 LINE L1 -3323 3005 2698 * 1880 157 20 3 chr3 97681487 97681787 -120355371 - AluSx SINE Alu -5 307 3 4215 221 43 34 chr3 97681787 97681825 -120355333 - L1MA4 LINE L1 -3630 2698 2662 1790 107 38 15 chr3 97681825 97682088 -120355070 - AluY SINE Alu -13 298 30 4215 221 43 34 chr3 97682088 97682981 -120354177 - L1MA4 LINE L1 -3666 2662 1737 240 35 0 0 chr3 97682981 97683010 -120354148 + (TTA)n Simple_repeat Simple_repeat 2 30 0 4215 221 43 34 chr3 97683010 97683673 -120353485 - L1MA4 LINE L1 -4591 1737 1082 3456 220 28 85 chr3 97683680 97683875 -120353283 - L1MA4 LINE L1 -4423 905 700 232 163 0 0 chr3 97683875 97683924 -120353234 + LTR66 LTR ERVL 394 442 -168 647 88 33 0 chr3 97683925 97684016 -120353142 - L1PA7 LINE L1 -15 6139 6046 3456 220 28 85 chr3 97684016 97684149 -120353009 - L1MA4 LINE L1 -4628 700 561 1826 154 11 4 chr3 97684149 97684270 -120352888 + AluSx SINE Alu 1 120 -185 189 0 0 0 chr3 97684270 97684291 -120352867 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1826 154 11 4 chr3 97684291 97684472 -120352686 + AluSx SINE Alu 120 305 0 3456 220 28 85 chr3 97684472 97685037 -120352121 - L1MA4 LINE L1 -4767 561 14 527 229 17 185 chr3 97686327 97686502 -120350656 - MIR SINE MIR 0 262 154 2428 140 29 14 chr3 97686502 97686945 -120350213 - L1PA16 LINE L1 -9 6157 5708 527 229 17 185 chr3 97686945 97687061 -120350097 - MIR SINE MIR -108 154 20 2391 127 5 13 chr3 97687565 97687943 -120349215 - THE1C LTR MaLR 0 375 1 344 308 138 27 chr3 97688132 97688356 -120348802 + LTR16A1 LTR ERVL 209 457 0 363 116 42 42 chr3 97688406 97688501 -120348657 - L1PB2 LINE L1 -3 6148 6054 4322 159 38 12 chr3 97688502 97689932 -120347226 - L1PBb LINE L1 -4388 1816 348 29739 124 12 56 chr3 97689944 97696376 -120340782 - L1PA7 LINE L1 -7 6147 12 1618 188 32 23 chr3 97696387 97696732 -120340426 - L1PBb LINE L1 -5849 355 8 * 4481 187 47 28 chr3 97696703 97697759 -120339399 - L1PBa LINE L1 -5223 1640 565 2450 244 16 9 chr3 97697862 97698441 -120338717 - L1PBa LINE L1 -6278 585 3 213 65 0 0 chr3 97698447 97698478 -120338680 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 23 54 0 0 chr3 97698663 97698700 -120338458 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr3 97698816 97698853 -120338305 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr3 97698969 97699006 -120338152 + AT_rich Low_complexity Low_complexity 1 37 0 632 250 28 28 chr3 97699082 97699226 -120337932 - FRAM SINE Alu -27 149 6 7052 176 103 78 chr3 97699584 97701297 -120335861 + MER52A LTR ERV1 1 1755 0 762 347 112 30 chr3 97701540 97702555 -120334603 - L2 LINE L2 -480 2834 1737 2130 105 40 0 chr3 97702588 97702884 -120334274 + AluY SINE Alu 4 311 0 366 263 18 53 chr3 97703335 97703449 -120333709 + MER69 DNA AcHobo 1 110 -1116 545 279 80 18 chr3 97705765 97705991 -120331167 + LTR16A1 LTR ERVL 212 451 -6 577 232 12 42 chr3 97706127 97706295 -120330863 - L1M4c LINE L1 -4732 1652 1490 2205 133 0 0 chr3 97706323 97706632 -120330526 + AluSg SINE Alu 1 309 -1 250 238 29 76 chr3 97707021 97707126 -120330032 + MLT1H LTR MaLR 431 530 -19 283 299 82 0 chr3 97707208 97707305 -120329853 + MER20 DNA MER1_type 5 109 -110 318 188 0 0 chr3 97707402 97707450 -120329708 + Alu SINE Alu 1 48 -254 333 0 0 0 chr3 97707531 97707568 -120329590 + (CA)n Simple_repeat Simple_repeat 2 38 0 216 0 0 0 chr3 97708104 97708128 -120329030 + (GA)n Simple_repeat Simple_repeat 1 24 0 266 73 24 0 chr3 97708130 97708171 -120328987 + (TG)n Simple_repeat Simple_repeat 2 43 0 216 162 0 0 chr3 97708611 97708648 -120328510 + (TG)n Simple_repeat Simple_repeat 2 38 0 1712 10 5 0 chr3 97709887 97710081 -120327077 - AluYb8 SINE Alu -3 315 121 27 29 0 0 chr3 97711126 97711160 -120325998 + AT_rich Low_complexity Low_complexity 1 34 0 1102 225 14 0 chr3 97711799 97712008 -120325150 + MER58A DNA MER1_type 13 224 0 2103 95 4 0 chr3 97712224 97712498 -120324660 + AluSx SINE Alu 19 293 -19 32 0 0 0 chr3 97712498 97712530 -120324628 + AT_rich Low_complexity Low_complexity 1 32 0 320 0 0 24 chr3 97714004 97714045 -120323113 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 2428 59 0 0 chr3 97714058 97714346 -120322812 - AluY SINE Alu -23 288 1 1505 177 0 4 chr3 97714910 97715164 -120321994 - AluSx SINE Alu -59 253 1 27 49 0 0 chr3 97716998 97717039 -120320119 + AT_rich Low_complexity Low_complexity 1 41 0 231 343 65 0 chr3 97719142 97719250 -120317908 - MIR SINE MIR -22 240 126 198 406 36 6 chr3 97720002 97720167 -120316991 + L2 LINE L2 2808 2977 -295 1244 183 51 8 chr3 97720506 97720741 -120316417 - MER21B LTR ERV1 -113 750 506 729 240 49 154 chr3 97720951 97721526 -120315632 - MLT1F1 LTR MaLR -46 547 4 383 329 31 6 chr3 97722673 97722834 -120314324 - MIR SINE MIR -10 252 88 225 0 0 0 chr3 97723241 97723266 -120313892 + (TG)n Simple_repeat Simple_repeat 2 26 0 315 164 0 0 chr3 97723853 97723914 -120313244 + (TA)n Simple_repeat Simple_repeat 1 61 0 335 335 46 71 chr3 97725113 97725688 -120311470 - L2 LINE L2 -1 3271 2707 513 189 56 0 chr3 97726223 97726313 -120310845 - AluJo SINE Alu -97 215 121 297 0 0 0 chr3 97726838 97726871 -120310287 + (CA)n Simple_repeat Simple_repeat 2 34 0 216 206 44 29 chr3 97728483 97728551 -120308607 - L2 LINE L2 -76 3237 3169 251 326 42 0 chr3 97728672 97728767 -120308391 - L2 LINE L2 -1 3271 3173 321 298 0 12 chr3 97728786 97728870 -120308288 - MIR SINE MIR -112 150 68 21 36 0 0 chr3 97729370 97729398 -120307760 + AT_rich Low_complexity Low_complexity 1 28 0 279 79 0 0 chr3 97730629 97730667 -120306491 + (TG)n Simple_repeat Simple_repeat 1 38 0 1610 211 65 6 chr3 97730789 97731144 -120306014 - MER21B LTR ERV1 -487 376 1 354 340 57 0 chr3 97731331 97731490 -120305668 - LTR33 LTR ERVL -315 206 39 249 379 0 10 chr3 97731629 97731732 -120305426 + L2 LINE L2 2407 2508 -806 193 292 21 0 chr3 97731727 97731775 -120305383 + MIR SINE MIR 7 55 -207 * 300 313 27 18 chr3 97731865 97731977 -120305181 - MER91A DNA MER1_type -82 114 2 453 301 66 27 chr3 97731979 97732162 -120304996 + MIR SINE MIR 57 246 -16 781 310 33 4 chr3 97733452 97733697 -120303461 - MIR SINE MIR -5 257 6 25 0 0 0 chr3 97736552 97736577 -120300581 + AT_rich Low_complexity Low_complexity 1 25 0 2142 130 3 0 chr3 97737632 97737939 -120299219 - AluSg SINE Alu -2 308 1 272 297 224 25 chr3 97738413 97738917 -120298241 - L3 LINE CR1 -285 1292 618 227 282 81 47 chr3 97739062 97739211 -120297947 - MIR SINE MIR -50 212 59 1831 157 3 3 chr3 97739484 97739798 -120297360 - AluSx SINE Alu 0 314 1 256 279 121 35 chr3 97739921 97740118 -120297040 - MIR SINE MIR -40 222 14 925 225 27 8 chr3 97741170 97741428 -120295730 + MER63 DNA MER1_type 792 1054 -8 254 318 0 0 chr3 97741519 97741582 -120295576 + MIR SINE MIR 181 243 -19 31 44 0 0 chr3 97741711 97741756 -120295402 + AT_rich Low_complexity Low_complexity 1 45 0 2112 196 13 3 chr3 97741813 97742205 -120294953 - MSTD LTR MaLR 0 396 1 620 265 188 56 chr3 97743822 97744199 -120292959 + L2 LINE L2 2887 3313 0 317 356 17 44 chr3 97744594 97744774 -120292384 - L2 LINE L2 -194 3078 2904 23 33 0 0 chr3 97744794 97744824 -120292334 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr3 97744935 97744964 -120292194 + AT_rich Low_complexity Low_complexity 1 29 0 202 209 0 0 chr3 97745663 97745706 -120291452 + T-rich Low_complexity Low_complexity 6 48 0 306 401 18 0 chr3 97747283 97747450 -120289708 - MIR3 SINE MIR -2 206 37 634 296 94 62 chr3 97748607 97749087 -120288071 - L2 LINE L2 -1 3312 2818 8022 156 56 19 chr3 97750021 97750637 -120286521 - Tigger1 DNA MER2_type 0 2418 1826 2294 90 3 0 chr3 97750637 97750936 -120286222 + AluSc SINE Alu 1 300 -9 8022 156 56 19 chr3 97750936 97752573 -120284585 - Tigger1 DNA MER2_type -592 1826 1 1655 174 13 30 chr3 97753855 97754159 -120282999 - AluJo SINE Alu -13 299 1 2679 42 0 0 chr3 97755132 97755443 -120281715 - AluY SINE Alu 0 311 1 31 82 0 0 chr3 97755600 97755673 -120281485 + AT_rich Low_complexity Low_complexity 1 73 0 339 25 0 0 chr3 97755887 97755927 -120281231 + (TG)n Simple_repeat Simple_repeat 1 40 0 404 289 109 6 chr3 97758110 97758266 -120278892 - MIR SINE MIR -10 252 81 17810 179 56 34 chr3 97758931 97759375 -120277783 - L1 LINE L1 -2110 5455 5022 1694 179 7 3 chr3 97759375 97759672 -120277486 - AluJb SINE Alu -9 303 6 17810 179 56 34 chr3 97759672 97761633 -120275525 - L1 LINE L1 -2543 5022 3106 753 10 19 19 chr3 97761633 97761736 -120275422 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 1781 154 0 7 chr3 97761738 97762017 -120275141 - AluSx SINE Alu -33 279 3 17810 179 56 34 chr3 97762017 97764225 -120272933 - L1 LINE L1 -4459 3106 704 458 113 0 0 chr3 97764225 97764296 -120272862 - L1PA13 LINE L1 -11 6152 6082 17810 179 56 34 chr3 97764296 97765004 -120272154 - L1 LINE L1 -6861 704 13 298 197 57 0 chr3 97765085 97765227 -120271931 + (TA)n Simple_repeat Simple_repeat 1 150 0 22 35 0 0 chr3 97766059 97766088 -120271070 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr3 97766838 97766861 -120270297 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 97766987 97767010 -120270148 + AT_rich Low_complexity Low_complexity 1 23 0 214 346 0 19 chr3 97767254 97767361 -120269797 - MIR3 SINE MIR -2 206 102 2079 106 0 3 chr3 97767365 97767649 -120269509 + AluSc SINE Alu 14 296 -13 213 39 0 0 chr3 97769003 97769029 -120268129 + (TTG)n Simple_repeat Simple_repeat 2 27 0 797 362 89 19 chr3 97769417 97769947 -120267211 + L3 LINE CR1 1009 1575 -2 275 254 0 0 chr3 97770027 97770098 -120267060 - MER116 DNA Mariner -1 79 9 24 0 0 0 chr3 97770239 97770263 -120266895 + AT_rich Low_complexity Low_complexity 1 24 0 352 327 39 13 chr3 97770576 97770732 -120266426 + MIR3 SINE MIR 36 195 -13 648 338 35 40 chr3 97771093 97771469 -120265689 + LTR16B LTR ERVL 89 462 -2 277 292 95 44 chr3 97771474 97771611 -120265547 + MIR SINE MIR 103 246 -16 565 160 72 8 chr3 97772301 97772426 -120264732 - MER65A LTR ERV1 -6 439 307 27660 100 9 6 chr3 97772440 97774896 -120262262 - L1PA7 LINE L1 0 6469 3991 246 32 0 0 chr3 97774896 97774927 -120262231 + (TTG)n Simple_repeat Simple_repeat 3 33 0 27660 100 9 6 chr3 97774927 97777266 -120259892 - L1PA7 LINE L1 -2478 3991 1660 5274 140 22 42 chr3 97777263 97778423 -120258735 - L1PA7 LINE L1 -5101 1360 327 * 1034 174 153 52 chr3 97778432 97778719 -120258439 - MER65A LTR ERV1 -125 320 5 1494 191 18 40 chr3 97779710 97780039 -120257119 - MLT1B LTR MaLR -8 382 61 2095 132 3 10 chr3 97780538 97780849 -120256309 - AluSq SINE Alu -4 309 1 279 0 0 0 chr3 97780969 97781000 -120256158 + (TTA)n Simple_repeat Simple_repeat 2 32 0 4454 209 49 8 chr3 97781306 97782394 -120254764 + L1MC2 LINE L1 5196 6333 -11 774 271 52 36 chr3 97782795 97783046 -120254112 - MIR SINE MIR -5 257 3 354 318 156 34 chr3 97783149 97783328 -120253830 + MIR SINE MIR 1 201 -61 243 61 0 0 chr3 97783855 97783888 -120253270 + (TC)n Simple_repeat Simple_repeat 1 33 0 229 224 0 0 chr3 97785067 97785116 -120252042 + (TA)n Simple_repeat Simple_repeat 1 49 0 221 286 14 14 chr3 97785768 97785838 -120251320 + L2 LINE L2 3201 3270 -2 309 319 38 31 chr3 97785860 97786020 -120251138 - MIR SINE MIR -89 173 13 39 74 0 0 chr3 97786343 97786424 -120250734 + AT_rich Low_complexity Low_complexity 1 81 0 21 82 0 0 chr3 97786980 97787029 -120250129 + AT_rich Low_complexity Low_complexity 1 49 0 24 77 0 0 chr3 97788463 97788515 -120248643 + AT_rich Low_complexity Low_complexity 1 52 0 34 55 0 0 chr3 97788581 97788636 -120248522 + AT_rich Low_complexity Low_complexity 1 55 0 26 30 0 0 chr3 97789167 97789200 -120247958 + AT_rich Low_complexity Low_complexity 1 33 0 641 178 20 40 chr3 97789675 97789827 -120247331 - L1MA6 LINE L1 -4 6296 6148 223 151 0 38 chr3 97790530 97790583 -120246575 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 21 0 0 0 chr3 97790900 97790921 -120246237 + AT_rich Low_complexity Low_complexity 1 21 0 24 77 0 0 chr3 97792727 97792779 -120244379 + AT_rich Low_complexity Low_complexity 1 52 0 2298 44 4 0 chr3 97794085 97794357 -120242801 + AluY SINE Alu 21 293 -18 27 0 0 0 chr3 97794358 97794385 -120242773 + AT_rich Low_complexity Low_complexity 1 27 0 208 388 53 29 chr3 97794616 97794822 -120242336 - MIR SINE MIR -29 233 23 2835 35 0 0 chr3 97794938 97795306 -120241852 + L1PA5 LINE L1 5800 6167 0 2334 286 96 39 chr3 97797050 97798128 -120239030 - L2 LINE L2 -796 2518 1380 221 384 106 31 chr3 97798244 97798603 -120238555 - L2 LINE L2 -69 3203 2818 25 31 0 0 chr3 97799057 97799089 -120238069 + AT_rich Low_complexity Low_complexity 1 32 0 26 30 0 0 chr3 97799291 97799324 -120237834 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr3 97800674 97800695 -120236463 + AT_rich Low_complexity Low_complexity 1 21 0 206 292 77 0 chr3 97800732 97800836 -120236322 - MIR SINE MIR -11 197 74 387 0 0 0 chr3 97802245 97802288 -120234870 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 71 0 0 chr3 97803015 97803057 -120234101 + AT_rich Low_complexity Low_complexity 1 42 0 27 73 0 0 chr3 97803170 97803225 -120233933 + AT_rich Low_complexity Low_complexity 1 55 0 290 258 60 12 chr3 97803250 97803354 -120233804 - L1ME LINE L1 -600 5566 5456 * 984 183 72 25 chr3 97803352 97803631 -120233527 - L1 LINE L1 -784 5362 5071 1209 270 16 33 chr3 97803754 97804178 -120232980 - L1M2 LINE L1 -4280 1691 1283 315 310 166 28 chr3 97804574 97804864 -120232294 + L1ME4a LINE L1 5543 5872 -249 29 78 0 0 chr3 97805603 97805667 -120231491 + AT_rich Low_complexity Low_complexity 1 64 0 1674 173 6 31 chr3 97805778 97806096 -120231062 - AluSx SINE Alu 0 312 3 1253 140 0 0 chr3 97806358 97806572 -120230586 + L1MA4A LINE L1 6085 6298 -5 27 0 0 0 chr3 97806683 97806710 -120230448 + AT_rich Low_complexity Low_complexity 1 27 0 180 111 0 0 chr3 97807769 97807796 -120229362 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 1323 282 133 68 chr3 97807797 97808904 -120228254 - L2 LINE L2 -7 3306 2128 47 61 0 0 chr3 97809283 97809365 -120227793 + AT_rich Low_complexity Low_complexity 1 82 0 22 0 0 0 chr3 97810553 97810575 -120226583 + AT_rich Low_complexity Low_complexity 1 22 0 2223 46 3 3 chr3 97811352 97811634 -120225524 + L1PA4 LINE L1 5871 6152 -3 346 275 84 8 chr3 97811643 97811774 -120225384 + MIR SINE MIR 57 197 -65 29 47 0 0 chr3 97812007 97812050 -120225108 + AT_rich Low_complexity Low_complexity 1 43 0 217 291 18 0 chr3 97812516 97812571 -120224587 - L2 LINE L2 -15 3298 3243 208 275 22 88 chr3 97812658 97812749 -120224409 - MIR SINE MIR -93 115 31 26 0 0 0 chr3 97813224 97813250 -120223908 + AT_rich Low_complexity Low_complexity 1 26 0 369 296 131 11 chr3 97813281 97813457 -120223701 - MIR SINE MIR 0 262 66 41894 40 24 1 chr3 97813458 97819468 -120217690 + L1PA2 LINE L1 4 6155 0 325 320 55 39 chr3 97821281 97821462 -120215696 + L2 LINE L2 3123 3306 -7 23 54 0 0 chr3 97822588 97822625 -120214533 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr3 97828813 97828838 -120208320 + AT_rich Low_complexity Low_complexity 1 25 0 232 364 146 0 chr3 97830182 97830292 -120206866 + MER91A DNA MER1_type 60 185 -11 416 261 131 22 chr3 97830339 97830561 -120206597 - L1ME3 LINE L1 -1 6161 5916 287 236 14 0 chr3 97830662 97830734 -120206424 + (TA)n Simple_repeat Simple_repeat 2 74 0 23 0 0 0 chr3 97831793 97831816 -120205342 + AT_rich Low_complexity Low_complexity 1 23 0 279 0 0 0 chr3 97831838 97831869 -120205289 + (CA)n Simple_repeat Simple_repeat 2 32 0 738 295 34 17 chr3 97832870 97833104 -120204054 + MIR SINE MIR 25 262 0 22 0 0 0 chr3 97834870 97834892 -120202266 + AT_rich Low_complexity Low_complexity 1 22 0 2355 42 7 10 chr3 97834892 97835203 -120201955 - AluY SINE Alu 0 310 1 35 83 0 0 chr3 97835767 97835851 -120201307 + AT_rich Low_complexity Low_complexity 1 84 0 2137 92 7 0 chr3 97837420 97837715 -120199443 - AluY SINE Alu -14 297 1 27 0 0 0 chr3 97837904 97837931 -120199227 + AT_rich Low_complexity Low_complexity 1 27 0 743 274 66 17 chr3 97838430 97838671 -120198487 - MLT1C LTR MaLR 0 467 215 542 206 9 9 chr3 97838671 97838778 -120198380 - FAM SINE Alu -41 144 38 647 264 42 0 chr3 97838782 97838949 -120198209 - MLT1C LTR MaLR -284 183 10 183 200 0 0 chr3 97839677 97839712 -120197446 + MIR SINE MIR 105 139 -69 23 0 0 0 chr3 97839778 97839801 -120197357 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 97840164 97840185 -120196973 + AT_rich Low_complexity Low_complexity 1 21 0 320 337 77 31 chr3 97840311 97840572 -120196586 + L1MEd LINE L1 66 338 -5781 1106 239 111 57 chr3 97840967 97841336 -120195822 - MSTD LTR MaLR -7 389 1 1030 140 12 0 chr3 97841563 97841727 -120195431 + AluJb SINE Alu 147 312 0 426 287 52 69 chr3 97841751 97842117 -120195041 + L1MEd LINE L1 1042 1398 -4731 190 314 64 29 chr3 97842682 97842750 -120194408 - MIR SINE MIR 0 262 198 4158 144 36 4 chr3 97842750 97843467 -120193691 + L1PA13 LINE L1 5419 6158 -5 190 314 64 29 chr3 97843467 97843538 -120193620 - MIR SINE MIR -64 198 118 859 219 48 5 chr3 97843616 97843803 -120193355 + MER20 DNA MER1_type 25 219 0 288 53 0 0 chr3 97844607 97844645 -120192513 + (TA)n Simple_repeat Simple_repeat 2 39 0 1718 159 0 41 chr3 97844684 97844974 -120192184 - AluSx SINE Alu -30 282 5 24 53 0 0 chr3 97846161 97846199 -120190959 + AT_rich Low_complexity Low_complexity 1 38 0 373 344 60 48 chr3 97846613 97846927 -120190231 + L2 LINE L2 1776 2093 -1221 224 297 40 69 chr3 97847009 97847110 -120190048 + L2 LINE L2 2276 2373 -941 196 415 31 0 chr3 97847239 97847369 -120189789 + L2 LINE L2 2597 2730 -584 286 344 101 21 chr3 97848627 97848816 -120188342 + MIR SINE MIR 53 256 -6 1889 100 79 4 chr3 97848923 97849202 -120187956 + AluSg SINE Alu 1 300 -10 268 316 140 7 chr3 97849304 97849440 -120187718 - L2 LINE L2 -7 3306 3153 23 0 0 0 chr3 97850439 97850462 -120186696 + AT_rich Low_complexity Low_complexity 1 23 0 183 162 0 0 chr3 97850532 97850569 -120186589 + T-rich Low_complexity Low_complexity 1 37 0 1896 151 7 0 chr3 97850732 97851049 -120186109 - AluSx SINE Alu 0 320 2 473 0 18 0 chr3 97851049 97851106 -120186052 + (CA)n Simple_repeat Simple_repeat 1 58 0 186 143 0 0 chr3 97851111 97851146 -120186012 + (TA)n Simple_repeat Simple_repeat 2 36 0 1041 209 104 72 chr3 97852375 97852749 -120184409 + MLT1B LTR MaLR 3 388 -2 1883 115 29 51 chr3 97852757 97852874 -120184284 + AluSg SINE Alu 4 122 -188 369 43 0 0 chr3 97852874 97852921 -120184237 + (CA)n Simple_repeat Simple_repeat 2 48 0 1883 115 29 51 chr3 97852921 97853117 -120184041 + AluSg SINE Alu 122 310 0 298 347 8 16 chr3 97853697 97853818 -120183340 + MIR3 SINE MIR 70 189 -19 1349 212 7 24 chr3 97854176 97854468 -120182690 + AluJo SINE Alu 1 287 -25 2998 197 58 41 chr3 97854497 97855344 -120181814 - L1MA4 LINE L1 -8 6292 5432 21 0 0 0 chr3 97855394 97855415 -120181743 + AT_rich Low_complexity Low_complexity 1 21 0 232 217 0 0 chr3 97855488 97855534 -120181624 + L1ME LINE L1 5579 5624 -540 206 146 0 24 chr3 97856683 97856724 -120180434 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 1126 136 0 10 chr3 97858927 97859125 -120178033 - L1MA6 LINE L1 -1 6299 6104 30 27 0 0 chr3 97860361 97860398 -120176760 + AT_rich Low_complexity Low_complexity 1 37 0 525 76 51 0 chr3 97860441 97860559 -120176599 + (TA)n Simple_repeat Simple_repeat 2 125 0 220 378 33 22 chr3 97862155 97862245 -120174913 - MIR3 SINE MIR -109 99 9 242 227 0 76 chr3 97862583 97862649 -120174509 + MIR SINE MIR 92 152 -110 254 265 0 15 chr3 97863009 97863077 -120174081 + T-rich Low_complexity Low_complexity 4 70 0 27 49 0 0 chr3 97863404 97863445 -120173713 + AT_rich Low_complexity Low_complexity 1 41 0 259 212 24 0 chr3 97863952 97864037 -120173121 + (TA)n Simple_repeat Simple_repeat 1 87 0 23 33 0 0 chr3 97864279 97864309 -120172849 + AT_rich Low_complexity Low_complexity 1 30 0 605 82 0 31 chr3 97865121 97865219 -120171939 + L1PA8 LINE L1 6076 6170 -2 2540 64 9 7 chr3 97865415 97865797 -120171361 + L1P LINE L1 5040 5423 -731 37 81 0 0 chr3 97865886 97865972 -120171186 + AT_rich Low_complexity Low_complexity 1 86 0 210 355 40 46 chr3 97868595 97868747 -120168411 + MER5A DNA MER1_type 36 186 -3 21 36 0 0 chr3 97869415 97869443 -120167715 + AT_rich Low_complexity Low_complexity 1 28 0 898 182 6 6 chr3 97869825 97869995 -120167163 + AluSg1 SINE Alu 1 170 -139 1675 152 4 11 chr3 97870259 97870529 -120166629 + AluSx SINE Alu 44 311 -1 912 136 0 0 chr3 97870766 97870928 -120166230 + (TA)n Simple_repeat Simple_repeat 2 163 0 937 179 0 0 chr3 97870928 97871079 -120166079 - AluSg/x SINE Alu -23 289 139 1692 113 0 12 chr3 97871083 97871331 -120165827 - AluY SINE Alu -12 299 55 884 225 20 51 chr3 97871488 97871741 -120165417 - MLT2D LTR ERVL -169 245 1 2162 45 8 0 chr3 97872603 97872892 -120164266 + AluY SINE Alu 39 329 0 2076 145 111 3 chr3 97873124 97873510 -120163648 - MSTA LTR MaLR 0 428 1 1139 118 0 0 chr3 97873577 97873738 -120163420 - AluSg/x SINE Alu -19 293 133 1956 95 4 22 chr3 97874531 97874847 -120162311 + AluY SINE Alu 14 324 0 1927 136 14 0 chr3 97875473 97875767 -120161391 + AluSx SINE Alu 14 311 -1 245 95 0 24 chr3 97875783 97875825 -120161333 + (TAAAAA)n Simple_repeat Simple_repeat 2 42 0 2261 236 46 25 chr3 97875830 97876507 -120160651 + L1MC4 LINE L1 7352 8042 0 1654 169 4 0 chr3 97877409 97877676 -120159482 + AluSx SINE Alu 44 311 -1 23 0 0 0 chr3 97877871 97877894 -120159264 + AT_rich Low_complexity Low_complexity 1 23 0 1826 164 0 0 chr3 97878017 97878315 -120158843 + AluJb SINE Alu 1 298 -14 180 314 78 49 chr3 97879079 97879181 -120157977 + L2 LINE L2 3137 3241 -31 183 147 0 0 chr3 97879325 97879359 -120157799 - L2 LINE L2 0 3313 3280 335 283 54 0 chr3 97880086 97880178 -120156980 - MLT1L LTR MaLR -221 394 298 216 0 0 0 chr3 97881620 97881644 -120155514 + (TG)n Simple_repeat Simple_repeat 2 25 0 418 240 96 41 chr3 97883701 97883847 -120153311 + MIR SINE MIR 84 237 -25 21 0 0 0 chr3 97884979 97885000 -120152158 + AT_rich Low_complexity Low_complexity 1 21 0 1971 107 4 4 chr3 97885616 97885944 -120151214 + AluY SINE Alu 1 328 0 27 29 0 0 chr3 97886300 97886334 -120150824 + AT_rich Low_complexity Low_complexity 1 34 0 1467 189 27 51 chr3 97888578 97888639 -120148519 + MER6 DNA MER2_type 1 62 -803 2623 10 0 0 chr3 97888639 97888929 -120148229 + AluYa5 SINE Alu 20 309 -2 1467 189 27 51 chr3 97888929 97889200 -120147958 + MER6 DNA MER2_type 62 325 -540 1296 254 62 5 chr3 97889991 97890396 -120146762 - MER110A LTR ERV1 -1 467 40 1872 31 0 0 chr3 97894577 97894801 -120142357 + L1PA4 LINE L1 5924 6147 -8 225 0 0 0 chr3 97894911 97894936 -120142222 + (GA)n Simple_repeat Simple_repeat 2 26 0 2140 205 54 104 chr3 97894977 97895737 -120141421 - MER72 LTR ERV1 0 722 1 371 259 24 0 chr3 97895828 97895913 -120141245 - L2 LINE L2 0 3313 3227 266 343 86 77 chr3 97896320 97896647 -120140511 - L2 LINE L2 -4 3268 2939 278 316 120 15 chr3 97896720 97896853 -120140305 - L2 LINE L2 -474 2840 2694 26 0 0 0 chr3 97897314 97897340 -120139818 + AT_rich Low_complexity Low_complexity 1 26 0 186 313 125 23 chr3 97897745 97897873 -120139285 - MIR SINE MIR -4 258 118 250 280 27 13 chr3 97898423 97898498 -120138660 + MIR3 SINE MIR 122 197 -11 272 286 168 43 chr3 97898529 97898690 -120138468 - MER5A DNA MER1_type 0 189 9 21 0 0 0 chr3 97898847 97898868 -120138290 + AT_rich Low_complexity Low_complexity 1 21 0 1411 185 54 0 chr3 97898875 97899173 -120137985 + L1MC2 LINE L1 6022 6335 -9 2425 53 0 10 chr3 97899886 97900186 -120136972 + AluY SINE Alu 1 297 -14 650 264 0 31 chr3 97900530 97900723 -120136435 - MER5A DNA MER1_type 0 189 3 2257 77 14 0 chr3 97903002 97903289 -120133869 - AluY SINE Alu -20 291 1 2018 213 128 66 chr3 97903408 97904147 -120133011 - LTR1B LTR ERV1 0 785 1 426 251 117 53 chr3 97904175 97904346 -120132812 - MLT1L LTR MaLR -409 206 25 31 88 0 0 chr3 97905010 97905090 -120132068 + AT_rich Low_complexity Low_complexity 1 80 0 1479 154 13 7 chr3 97906072 97906371 -120130787 - L1MA5 LINE L1 0 6300 6000 1810 109 5 136 chr3 97906397 97906793 -120130365 - LTR14B LTR ERVK 0 608 1 1481 201 34 0 chr3 97906844 97907142 -120130016 - AluJo SINE Alu -2 310 3 30 59 0 0 chr3 97907151 97907202 -120129956 + AT_rich Low_complexity Low_complexity 1 51 0 1515 95 5 0 chr3 97907202 97907423 -120129735 - L1MA1 LINE L1 -3 6299 6078 491 214 0 0 chr3 97907608 97907697 -120129461 - AluY SINE Alu -27 284 196 393 22 0 0 chr3 97907873 97907919 -120129239 + (TA)n Simple_repeat Simple_repeat 1 46 0 253 89 78 11 chr3 97909025 97909115 -120128043 + (TA)n Simple_repeat Simple_repeat 2 97 0 217 49 0 49 chr3 97909139 97909180 -120127978 + (TA)n Simple_repeat Simple_repeat 1 39 0 282 128 64 23 chr3 97909235 97909407 -120127751 + (TA)n Simple_repeat Simple_repeat 2 180 0 270 0 0 0 chr3 97911021 97911051 -120126107 + (TA)n Simple_repeat Simple_repeat 2 31 0 382 372 102 27 chr3 97911808 97912211 -120124947 + L2 LINE L2 2235 2667 -647 903 196 186 61 chr3 97912506 97912833 -120124325 - MER93b LTR ERV1 -5 368 1 2315 53 0 0 chr3 97914985 97915294 -120121864 - AluY SINE Alu 0 309 1 366 23 0 0 chr3 97916251 97916294 -120120864 + (CAA)n Simple_repeat Simple_repeat 3 45 0 234 62 0 0 chr3 97916566 97916598 -120120560 + (T)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr3 97918147 97918168 -120118990 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr3 97918489 97918526 -120118632 + AT_rich Low_complexity Low_complexity 1 37 0 233 378 51 0 chr3 97918876 97918974 -120118184 + L2 LINE L2 3170 3272 0 183 80 0 0 chr3 97919193 97919218 -120117940 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 225 0 0 0 chr3 97919217 97919242 -120117916 + (TG)n Simple_repeat Simple_repeat 2 26 0 243 222 0 0 chr3 97919881 97919962 -120117196 + (TA)n Simple_repeat Simple_repeat 2 82 0 400 152 38 76 chr3 97920654 97920733 -120116425 + Tigger3b DNA MER2_type 1 76 -1155 1204 168 0 9 chr3 97920734 97920948 -120116210 + AluSx SINE Alu 1 212 -100 258 73 49 0 chr3 97920948 97920989 -120116169 + AluSp SINE Alu 78 120 -183 1243 133 0 0 chr3 97921418 97921643 -120115515 + AluSq SINE Alu 105 329 0 814 184 0 12 chr3 97921661 97921824 -120115334 + FRAM SINE Alu 5 165 -1 5944 176 14 21 chr3 97921835 97923005 -120114153 + Tigger3b DNA MER2_type 70 1231 0 279 175 0 0 chr3 97923005 97923062 -120114096 + (TG)n Simple_repeat Simple_repeat 2 58 0 230 64 43 0 chr3 97923062 97923109 -120114049 - LTR66 LTR ERVL -171 439 391 * 982 207 30 20 chr3 97923097 97923295 -120113863 - MER8 DNA MER2_type -39 200 1 375 182 0 0 chr3 97923721 97923798 -120113360 + (TA)n Simple_repeat Simple_repeat 2 78 0 24 67 0 0 chr3 97924029 97924074 -120113084 + AT_rich Low_complexity Low_complexity 1 45 0 238 404 89 14 chr3 97924190 97924336 -120112822 - L2 LINE L2 -5 3267 3111 415 284 77 16 chr3 97924347 97924541 -120112617 + MER58C DNA MER1_type 10 215 0 780 181 0 0 chr3 97924978 97925111 -120112047 + FRAM SINE Alu 20 152 -24 299 292 25 10 chr3 97925186 97925302 -120111856 + GA-rich Low_complexity Low_complexity 1 201 0 242 338 52 22 chr3 97925501 97925574 -120111584 + MIR SINE MIR 123 192 -70 1611 204 35 9 chr3 97925574 97925912 -120111246 + MER7A DNA MER2_type 2 346 0 242 338 52 22 chr3 97925912 97925974 -120111184 + MIR SINE MIR 192 262 0 211 225 157 45 chr3 97925960 97926049 -120111109 + MIR SINE MIR 75 173 -89 * 186 382 0 22 chr3 97927028 97927117 -120110041 + L3b LINE CR1 1491 1577 -6 207 161 0 0 chr3 97927935 97927966 -120109192 + (TG)n Simple_repeat Simple_repeat 2 32 0 258 274 16 0 chr3 97928556 97928618 -120108540 + L2 LINE L2 3201 3263 -9 32 57 0 0 chr3 97928769 97928822 -120108336 + AT_rich Low_complexity Low_complexity 1 53 0 286 338 0 0 chr3 97929020 97929100 -120108058 - L2 LINE L2 0 3313 3234 186 43 0 0 chr3 97929596 97929619 -120107539 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 6693 67 3 14 chr3 97929619 97930702 -120106456 - L1PA7 LINE L1 -11 6143 5061 3425 84 24 0 chr3 97930702 97931167 -120105991 - L1PA7 LINE L1 -1686 4460 3985 22 56 0 0 chr3 97931185 97931221 -120105937 + AT_rich Low_complexity Low_complexity 1 36 0 5423 158 21 14 chr3 97931267 97932232 -120104926 - L1MC1 LINE L1 -1 6332 5361 26 0 0 0 chr3 97932260 97932286 -120104872 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 97932592 97932613 -120104545 + AT_rich Low_complexity Low_complexity 1 21 0 1772 175 0 46 chr3 97933250 97933575 -120103583 - AluJo SINE Alu -2 310 1 2021 128 10 0 chr3 97933743 97934040 -120103118 - AluSq SINE Alu -13 300 1 223 284 69 10 chr3 97934922 97935024 -120102134 + MIR3 SINE MIR 95 202 -6 1564 163 80 0 chr3 97935300 97935576 -120101582 + AluSx SINE Alu 13 310 -2 24 32 0 0 chr3 97935630 97935661 -120101497 + AT_rich Low_complexity Low_complexity 1 31 0 31 58 0 0 chr3 97935927 97935979 -120101179 + AT_rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr3 97937117 97937140 -120100018 + AT_rich Low_complexity Low_complexity 1 23 0 402 57 0 0 chr3 97937166 97937219 -120099939 + (TA)n Simple_repeat Simple_repeat 1 53 0 1729 322 152 18 chr3 97937980 97939022 -120098136 + L2 LINE L2 1718 2979 -334 255 31 0 0 chr3 97939022 97939054 -120098104 + (CA)n Simple_repeat Simple_repeat 2 33 0 1729 322 152 18 chr3 97939054 97939397 -120097761 + L2 LINE L2 2979 3275 -38 347 415 18 9 chr3 97939628 97939845 -120097313 - MIR SINE MIR -42 220 2 24 0 0 0 chr3 97940050 97940074 -120097084 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 97940862 97940883 -120096275 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 97941139 97941161 -120095997 + AT_rich Low_complexity Low_complexity 1 22 0 2206 112 3 0 chr3 97941175 97941487 -120095671 - AluSp SINE Alu 0 313 1 362 92 0 15 chr3 97941577 97941642 -120095516 + (TA)n Simple_repeat Simple_repeat 2 65 0 2375 62 0 7 chr3 97942635 97942941 -120094217 + AluY SINE Alu 1 304 -7 21 0 0 0 chr3 97943332 97943353 -120093805 + AT_rich Low_complexity Low_complexity 1 21 0 1976 116 0 0 chr3 97943354 97943638 -120093520 + AluY SINE Alu 1 321 0 247 81 0 0 chr3 97943638 97943675 -120093483 + (TAA)n Simple_repeat Simple_repeat 2 180 0 260 386 42 32 chr3 97944316 97944505 -120092653 - MIR3 SINE MIR -15 193 3 23 54 0 0 chr3 97945076 97945113 -120092045 + AT_rich Low_complexity Low_complexity 1 37 0 26 74 0 0 chr3 97945157 97945211 -120091947 + AT_rich Low_complexity Low_complexity 1 54 0 184 273 34 45 chr3 97946177 97946265 -120090893 + L2 LINE L2 3186 3272 0 23 33 0 0 chr3 97947069 97947099 -120090059 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr3 97947147 97947167 -120089991 + (CAA)n Simple_repeat Simple_repeat 2 21 0 247 286 0 0 chr3 97947481 97947558 -120089600 + (CA)n Simple_repeat Simple_repeat 1 77 0 1834 108 89 0 chr3 97948658 97948927 -120088231 + AluSx SINE Alu 1 293 -19 262 200 0 0 chr3 97949054 97949099 -120088059 - LTR33 LTR ERVL -134 387 343 298 330 88 16 chr3 97949290 97949472 -120087686 - L2 LINE L2 -3 3310 3116 24 53 0 0 chr3 97951208 97951246 -120085912 + AT_rich Low_complexity Low_complexity 1 38 0 2450 132 3 3 chr3 97951568 97951932 -120085226 - THE1B LTR MaLR 0 364 1 8701 133 55 35 chr3 97951932 97953482 -120083676 - THE1B-int LTR MaLR 0 1580 1 2339 141 6 3 chr3 97953482 97953845 -120083313 - THE1B LTR MaLR 0 364 1 193 204 20 41 chr3 97953945 97953994 -120083164 - L2 LINE L2 -2 3311 3264 243 336 57 16 chr3 97954093 97954215 -120082943 - MIR SINE MIR -102 160 34 407 296 44 0 chr3 97954874 97955009 -120082149 - MIR SINE MIR -2 260 120 398 288 0 51 chr3 97957422 97957540 -120079618 + L2 LINE L2 3198 3309 -4 1166 144 0 0 chr3 97957619 97957799 -120079359 + L1PB1 LINE L1 5968 6147 -4 27 0 0 0 chr3 97957800 97957827 -120079331 + AT_rich Low_complexity Low_complexity 1 27 0 28 61 0 0 chr3 97959414 97959463 -120077695 + AT_rich Low_complexity Low_complexity 1 49 0 303 108 20 39 chr3 97960342 97960444 -120076714 + (TA)n Simple_repeat Simple_repeat 1 100 0 21 0 0 0 chr3 97960506 97960527 -120076631 + AT_rich Low_complexity Low_complexity 1 21 0 2401 143 20 49 chr3 97961815 97962262 -120074896 + MER57B LTR ERV1 1 434 0 414 57 0 0 chr3 97962422 97962475 -120074683 + (TA)n Simple_repeat Simple_repeat 2 54 0 21 82 0 0 chr3 97962589 97962638 -120074520 + AT_rich Low_complexity Low_complexity 1 49 0 377 320 86 29 chr3 97962645 97963120 -120074038 - L1ME3 LINE L1 -230 5940 5428 1913 134 16 7 chr3 97963222 97963529 -120073629 - AluSq SINE Alu 0 313 4 240 122 0 0 chr3 97963590 97963631 -120073527 + (TG)n Simple_repeat Simple_repeat 2 42 0 207 114 0 0 chr3 97963833 97963868 -120073290 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1791 153 4 0 chr3 97963870 97964151 -120073007 - AluSx SINE Alu -28 284 3 321 350 38 27 chr3 97965481 97965664 -120071494 + MIR SINE MIR 53 237 -25 1133 162 16 0 chr3 97966988 97967173 -120069985 - AluJb SINE Alu -53 259 72 247 214 18 0 chr3 97967416 97967472 -120069686 + (TATG)n Simple_repeat Simple_repeat 4 60 0 537 304 89 5 chr3 97969362 97969576 -120067582 + LTR16B LTR ERVL 230 461 -3 26 30 0 0 chr3 97971294 97971327 -120065831 + AT_rich Low_complexity Low_complexity 1 33 0 458 239 68 0 chr3 97971349 97971466 -120065692 - L3 LINE CR1 -250 1327 1203 272 307 50 10 chr3 97971721 97971822 -120065336 - L3 LINE CR1 -678 899 795 183 80 0 0 chr3 97972008 97972033 -120065125 + (A)n Simple_repeat Simple_repeat 1 25 0 21 57 0 0 chr3 97972703 97972738 -120064420 + AT_rich Low_complexity Low_complexity 1 35 0 1621 48 53 0 chr3 97972806 97973013 -120064145 - AluY SINE Alu -93 218 1 21 57 0 0 chr3 97973066 97973101 -120064057 + AT_rich Low_complexity Low_complexity 1 35 0 1094 181 4 55 chr3 97974008 97974245 -120062913 + AluJb SINE Alu 88 312 0 80 79 0 0 chr3 97974806 97974984 -120062174 + AT_rich Low_complexity Low_complexity 1 178 0 21 71 0 0 chr3 97975373 97975415 -120061743 + AT_rich Low_complexity Low_complexity 1 42 0 3600 196 62 21 chr3 97975577 97976825 -120060333 + L1MB4 LINE L1 4882 6180 0 15402 48 30 0 chr3 97976926 97979686 -120057472 - L1PA5 LINE L1 -2 6152 3332 21 71 0 0 chr3 97981220 97981262 -120055896 + AT_rich Low_complexity Low_complexity 1 42 0 259 315 178 15 chr3 97984219 97984416 -120052742 - MIR SINE MIR -13 249 21 565 85 11 32 chr3 97984619 97984713 -120052445 - L1PA11 LINE L1 0 6174 6083 212 0 36 0 chr3 97984835 97984863 -120052295 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 299 381 128 33 chr3 97985512 97985837 -120051321 + L2 LINE L2 2343 2636 -678 1493 198 3 20 chr3 97985837 97986135 -120051023 + AluJb SINE Alu 5 297 -15 299 381 128 33 chr3 97986135 97986358 -120050800 + L2 LINE L2 2636 2943 -371 1088 191 33 118 chr3 97986619 97986949 -120050209 + AluJo SINE Alu 1 302 0 22 0 0 0 chr3 97986980 97987002 -120050156 + AT_rich Low_complexity Low_complexity 1 22 0 337 410 21 13 chr3 97988394 97988633 -120048525 - L2 LINE L2 -479 2835 2595 496 290 25 0 chr3 97990530 97990692 -120046466 + MER63A DNA MER1_type 9 174 -36 1531 189 34 7 chr3 97990758 97991049 -120046109 - AluSx SINE Alu -13 299 1 844 282 77 53 chr3 97991670 97992088 -120045070 - LTR16C LTR ERVL -61 430 3 209 346 50 0 chr3 97992706 97992807 -120044351 + L2 LINE L2 3192 3297 -16 444 306 50 68 chr3 97994075 97994356 -120042802 - MLT1J2 LTR MaLR -98 352 77 360 43 0 0 chr3 97994623 97994669 -120042489 + (TTTTA)n Simple_repeat Simple_repeat 1 46 0 26 0 0 0 chr3 97995055 97995081 -120042077 + AT_rich Low_complexity Low_complexity 1 26 0 30 59 0 0 chr3 97995203 97995254 -120041904 + AT_rich Low_complexity Low_complexity 1 51 0 180 158 0 0 chr3 97995314 97995352 -120041806 + (CA)n Simple_repeat Simple_repeat 1 38 0 194 277 64 112 chr3 97995638 97995826 -120041332 - MIR SINE MIR -43 219 41 264 337 25 49 chr3 97996791 97996954 -120040204 + MIR SINE MIR 33 191 -71 28 0 0 0 chr3 97997000 97997028 -120040130 + AT_rich Low_complexity Low_complexity 1 28 0 1344 193 57 82 chr3 97997037 97997500 -120039658 - MLT2D LTR ERVL 0 464 5 243 345 27 0 chr3 97997642 97997752 -120039406 + MIR SINE MIR 150 262 0 21 57 0 0 chr3 97999347 97999382 -120037776 + AT_rich Low_complexity Low_complexity 1 35 0 279 0 0 0 chr3 97999834 97999865 -120037293 + (CA)n Simple_repeat Simple_repeat 2 32 0 288 53 0 0 chr3 98000180 98000218 -120036940 + (CA)n Simple_repeat Simple_repeat 2 39 0 191 229 42 21 chr3 98000470 98000518 -120036640 - L2 LINE L2 -94 3219 3171 23 54 0 0 chr3 98000965 98001002 -120036156 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr3 98001304 98001334 -120035824 + AT_rich Low_complexity Low_complexity 1 30 0 234 0 0 0 chr3 98001870 98001896 -120035262 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 1039 186 41 41 chr3 98001899 98002141 -120035017 - AluJo SINE Alu -30 282 41 361 356 31 40 chr3 98002296 98002518 -120034640 - MIR SINE MIR -18 244 25 21 57 0 0 chr3 98003242 98003277 -120033881 + AT_rich Low_complexity Low_complexity 1 35 0 511 210 72 84 chr3 98003278 98003540 -120033618 + MIR SINE MIR 1 259 -3 212 136 45 0 chr3 98004141 98004185 -120032973 + (TA)n Simple_repeat Simple_repeat 2 47 0 33 80 0 0 chr3 98005750 98005825 -120031333 + AT_rich Low_complexity Low_complexity 1 75 0 538 168 175 0 chr3 98006058 98006201 -120030957 - L1MB4 LINE L1 -2 6178 6011 222 232 0 18 chr3 98006309 98006365 -120030793 + (TATATG)n Simple_repeat Simple_repeat 2 56 0 24 53 0 0 chr3 98006574 98006612 -120030546 + AT_rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr3 98009867 98009892 -120027266 + AT_rich Low_complexity Low_complexity 1 25 0 896 196 5 76 chr3 98010167 98010391 -120026767 + AluJo SINE Alu 1 208 -104 549 133 0 0 chr3 98010413 98010511 -120026647 + (GGA)n Simple_repeat Simple_repeat 3 100 0 435 83 0 0 chr3 98010569 98010629 -120026529 + (TG)n Simple_repeat Simple_repeat 1 60 0 2055 105 4 0 chr3 98011365 98011673 -120025485 - AluSc SINE Alu 0 309 1 986 25 0 0 chr3 98012393 98012511 -120024647 + L1PA2 LINE L1 6038 6155 0 180 0 0 0 chr3 98012602 98012622 -120024536 + (GA)n Simple_repeat Simple_repeat 1 20 0 245 73 0 24 chr3 98012651 98012692 -120024466 + (GA)n Simple_repeat Simple_repeat 1 40 0 358 362 43 0 chr3 98012974 98013137 -120024021 - MIR SINE MIR -56 206 37 913 200 12 6 chr3 98013274 98013444 -120023714 + FRAM SINE Alu 1 164 -12 2208 68 14 3 chr3 98014514 98014807 -120022351 + AluY SINE Alu 1 296 -15 1960 137 13 0 chr3 98015154 98015454 -120021704 + AluSx SINE Alu 1 304 -8 24 0 0 0 chr3 98015981 98016005 -120021153 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr3 98017544 98017572 -120019586 + AT_rich Low_complexity Low_complexity 1 28 0 1302 201 113 9 chr3 98018473 98018792 -120018366 - MSTB LTR MaLR -74 352 1 5083 141 14 40 chr3 98018888 98019704 -120017454 - L1PA16 LINE L1 -5 6161 5366 1831 114 11 19 chr3 98019704 98019975 -120017183 - AluSc SINE Alu -25 284 16 5083 141 14 40 chr3 98019975 98020128 -120017030 - L1PA16 LINE L1 -800 5366 5211 444 290 8 0 chr3 98020127 98020258 -120016900 - L1 LINE L1 -3793 2353 2222 * 392 104 15 0 chr3 98020658 98020725 -120016433 + (TCTA)n Simple_repeat Simple_repeat 4 71 0 180 77 0 0 chr3 98020746 98020772 -120016386 + (TA)n Simple_repeat Simple_repeat 1 26 0 2018 211 15 47 chr3 98020774 98021243 -120015915 - MER82 DNA MER2_type 0 653 200 904 265 0 0 chr3 98021512 98021716 -120015442 - MER82 DNA MER2_type -449 204 1 55 80 0 0 chr3 98022359 98022484 -120014674 + AT_rich Low_complexity Low_complexity 1 125 0 531 259 29 6 chr3 98023177 98023347 -120013811 + MER104 DNA Tc2 4 177 -3 2200 102 0 0 chr3 98023382 98023676 -120013482 - AluY SINE Alu -17 294 1 23 0 0 0 chr3 98023900 98023923 -120013235 + AT_rich Low_complexity Low_complexity 1 23 0 194 175 25 0 chr3 98024328 98024368 -120012790 + L2 LINE L2 3273 3313 0 212 270 24 24 chr3 98024477 98024603 -120012555 + (CATATA)n Simple_repeat Simple_repeat 4 129 0 183 156 0 0 chr3 98025334 98025366 -120011792 + A-rich Low_complexity Low_complexity 1 32 0 2250 92 14 5 chr3 98026861 98027201 -120009957 - pTR5 LTR ERV1 -78 702 66 253 292 10 0 chr3 98027201 98027297 -120009861 - LTR30 LTR ERV1 -80 642 546 3005 147 48 31 chr3 98027297 98028094 -120009064 - pTR5 LTR ERV1 -412 2026 741 318 307 34 67 chr3 98028311 98028490 -120008668 + MER5B DNA MER1_type 6 178 0 726 168 0 8 chr3 98029415 98029540 -120007618 - FLAM_A SINE Alu -7 135 12 2156 118 0 16 chr3 98030035 98030341 -120006817 - AluSx SINE Alu -11 301 1 346 232 20 50 chr3 98030885 98030984 -120006174 - MIR3 SINE MIR -18 190 95 312 27 0 0 chr3 98031680 98031717 -120005441 + (TG)n Simple_repeat Simple_repeat 2 38 0 23 33 0 0 chr3 98033402 98033432 -120003726 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 98033618 98033639 -120003519 + AT_rich Low_complexity Low_complexity 1 21 0 2430 151 42 22 chr3 98034856 98035313 -120001845 - L1PA16 LINE L1 -5 6161 5696 186 118 0 0 chr3 98038258 98038292 -119998866 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 1725 87 3 113 chr3 98038297 98038463 -119998695 - AluSg SINE Alu -33 277 159 198 0 0 0 chr3 98038463 98038485 -119998673 + (TA)n Simple_repeat Simple_repeat 2 23 0 1725 87 3 113 chr3 98038485 98038629 -119998529 - AluSg SINE Alu -151 159 1 21 0 0 0 chr3 98039234 98039255 -119997903 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr3 98039298 98039323 -119997835 + (TAGG)n Simple_repeat Simple_repeat 3 27 0 22 0 0 0 chr3 98039617 98039639 -119997519 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr3 98039715 98039744 -119997414 + AT_rich Low_complexity Low_complexity 1 29 0 601 233 145 4 chr3 98040831 98040859 -119996299 - MLT1D-int LTR MaLR -973 398 375 1603 176 56 0 chr3 98040859 98041143 -119996015 - AluSx SINE Alu -12 300 1 601 233 145 4 chr3 98041143 98041352 -119995806 - MLT1D-int LTR MaLR -996 375 9 1232 268 96 25 chr3 98041352 98041792 -119995366 - MLT1D LTR MaLR -33 472 2 231 71 0 0 chr3 98041794 98041822 -119995336 - MLT1E3 LTR MaLR -596 28 1 25 31 0 0 chr3 98043151 98043183 -119993975 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr3 98043243 98043271 -119993887 + AT_rich Low_complexity Low_complexity 1 28 0 201 313 0 82 chr3 98043330 98043464 -119993694 - MIR SINE MIR -18 244 122 21 57 0 0 chr3 98043568 98043603 -119993555 + AT_rich Low_complexity Low_complexity 1 35 0 205 305 73 0 chr3 98044586 98044668 -119992490 - MIR SINE MIR -116 146 59 22 0 0 0 chr3 98046286 98046308 -119990850 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 98046810 98046838 -119990320 + AT_rich Low_complexity Low_complexity 1 28 0 1351 281 91 32 chr3 98046989 98047822 -119989336 - L1MEc LINE L1 -2905 3310 2385 1321 97 0 10 chr3 98047826 98048022 -119989136 + L1PA7 LINE L1 5960 6153 -1 1218 240 13 6 chr3 98048025 98048337 -119988821 - L1MC3 LINE L1 -6 7779 7466 1240 236 55 42 chr3 98048365 98048891 -119988267 - L1MEc LINE L1 -4014 2382 1850 568 333 69 0 chr3 98048922 98049153 -119988005 - L1MEc LINE L1 -6101 295 49 243 372 83 0 chr3 98049365 98049521 -119987637 + MIR SINE MIR 20 188 -74 275 335 173 20 chr3 98049610 98049807 -119987351 - MIR SINE MIR -19 243 17 246 245 151 19 chr3 98050299 98050405 -119986753 + MIR SINE MIR 109 228 -34 1592 169 3 73 chr3 98050983 98051296 -119985862 - AluJb SINE Alu -21 291 1 22 56 0 0 chr3 98054112 98054148 -119983010 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr3 98055271 98055295 -119981863 + AT_rich Low_complexity Low_complexity 1 24 0 24 77 0 0 chr3 98055339 98055391 -119981767 + AT_rich Low_complexity Low_complexity 1 52 0 2085 75 11 0 chr3 98055934 98056213 -119980945 - L1PA7 LINE L1 0 6154 5873 216 67 0 0 chr3 98056400 98056430 -119980728 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 885 29 0 0 chr3 98056430 98056533 -119980625 - L1PA4 LINE L1 -24 6131 6029 219 292 0 0 chr3 98056621 98056669 -119980489 + MIR3 SINE MIR 116 163 -45 207 0 0 0 chr3 98057575 98057598 -119979560 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 185 35 69 0 chr3 98059387 98059416 -119977742 + T-rich Low_complexity Low_complexity 2 32 0 740 155 207 31 chr3 98059682 98059875 -119977283 - L1MA10 LINE L1 -8 6326 6100 396 88 0 18 chr3 98059883 98059940 -119977218 - MER3 DNA MER1_type -153 56 1 1663 177 0 0 chr3 98059975 98060246 -119976912 - AluSx SINE Alu -41 271 1 25 0 0 0 chr3 98061387 98061412 -119975746 + AT_rich Low_complexity Low_complexity 1 25 0 361 269 34 42 chr3 98061871 98061990 -119975168 - L2 LINE L2 -6 3307 3190 209 146 21 0 chr3 98062085 98062133 -119975025 + (TA)n Simple_repeat Simple_repeat 2 50 0 288 247 234 45 chr3 98062572 98062726 -119974432 - MIR3 SINE MIR -8 200 18 31 44 0 0 chr3 98062903 98062948 -119974210 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr3 98063013 98063035 -119974123 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 98063098 98063121 -119974037 + AT_rich Low_complexity Low_complexity 1 23 0 197 351 53 0 chr3 98063450 98063544 -119973614 - MIR3 SINE MIR -9 199 101 312 233 156 0 chr3 98063558 98063648 -119973510 + L2 LINE L2 3197 3300 -13 195 167 0 0 chr3 98064255 98064297 -119972861 + (TA)n Simple_repeat Simple_repeat 2 43 0 441 54 0 0 chr3 98064348 98064404 -119972754 + (TA)n Simple_repeat Simple_repeat 1 56 0 272 338 35 49 chr3 98066292 98066434 -119970724 + L2 LINE L2 3173 3312 -1 25 0 0 0 chr3 98067408 98067433 -119969725 + AT_rich Low_complexity Low_complexity 1 25 0 208 325 199 7 chr3 98068678 98068829 -119968329 - MIR3 SINE MIR -26 182 3 287 309 145 7 chr3 98069327 98069479 -119967679 - MIR SINE MIR -40 222 50 220 388 90 0 chr3 98070212 98070346 -119966812 - MIR SINE MIR -38 224 79 823 189 22 0 chr3 98070708 98070888 -119966270 + L1MA3 LINE L1 6118 6301 -4 2282 101 0 0 chr3 98070888 98071184 -119965974 - AluSg SINE Alu -14 296 1 21 57 0 0 chr3 98071184 98071219 -119965939 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr3 98071425 98071458 -119965700 + AT_rich Low_complexity Low_complexity 1 33 0 299 308 11 19 chr3 98073727 98073922 -119963236 - MIR SINE MIR 0 262 13 34 24 0 0 chr3 98076849 98076890 -119960268 + AT_rich Low_complexity Low_complexity 1 41 0 265 317 98 8 chr3 98077031 98077154 -119960004 + MIR SINE MIR 7 140 -122 363 107 40 13 chr3 98078432 98078507 -119958651 + GA-rich Low_complexity Low_complexity 4 80 0 205 156 16 31 chr3 98078781 98078845 -119958313 + T-rich Low_complexity Low_complexity 2 64 0 3890 176 43 54 chr3 98080206 98081075 -119956083 - MER21B LTR ERV1 -4 859 1 30 27 0 0 chr3 98081961 98081998 -119955160 + AT_rich Low_complexity Low_complexity 1 37 0 1124 108 6 0 chr3 98082128 98082285 -119954873 + AluSg/x SINE Alu 141 298 -14 204 224 17 35 chr3 98082578 98082636 -119954522 + GA-rich Low_complexity Low_complexity 4 60 0 453 344 12 12 chr3 98083918 98084078 -119953080 + MIR SINE MIR 5 164 -98 309 306 30 22 chr3 98084534 98084668 -119952490 - MIR SINE MIR -55 207 73 330 379 100 41 chr3 98085297 98085531 -119951627 + L2 LINE L2 2924 3183 -89 1652 166 25 97 chr3 98085531 98085866 -119951292 + THE1C LTR MaLR 1 304 -71 2547 46 3 0 chr3 98085866 98086172 -119950986 - AluY SINE Alu -4 307 1 1652 166 25 97 chr3 98086172 98086240 -119950918 + THE1C LTR MaLR 304 375 0 330 379 100 41 chr3 98086240 98086324 -119950834 + L2 LINE L2 3183 3261 -11 423 0 0 0 chr3 98086411 98086458 -119950700 + (CA)n Simple_repeat Simple_repeat 2 48 0 2343 78 0 0 chr3 98087441 98087750 -119949408 + AluY SINE Alu 3 311 0 3648 97 17 0 chr3 98088182 98088708 -119948450 + L1PA13 LINE L1 5621 6155 -8 21 0 0 0 chr3 98089667 98089688 -119947470 + AT_rich Low_complexity Low_complexity 1 21 0 425 218 190 39 chr3 98089815 98089994 -119947164 - MER3 DNA MER1_type -2 207 2 969 243 33 0 chr3 98090008 98090218 -119946940 + MER58A DNA MER1_type 6 222 -2 22 0 0 0 chr3 98092351 98092373 -119944785 + AT_rich Low_complexity Low_complexity 1 22 0 234 62 0 0 chr3 98093037 98093069 -119944089 + (TG)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chr3 98095087 98095115 -119942043 + AT_rich Low_complexity Low_complexity 1 28 0 505 274 20 89 chr3 98095226 98095518 -119941640 - L2 LINE L2 -803 2511 2240 1408 196 75 32 chr3 98096255 98096627 -119940531 - MLT1B LTR MaLR 0 390 3 28 29 0 0 chr3 98096630 98096665 -119940493 + AT_rich Low_complexity Low_complexity 1 35 0 191 170 21 0 chr3 98096691 98096738 -119940420 + (TA)n Simple_repeat Simple_repeat 2 49 0 197 272 15 15 chr3 98096753 98096889 -119940269 + (TA)n Simple_repeat Simple_repeat 2 137 0 392 71 71 0 chr3 98097247 98097346 -119939812 + (TA)n Simple_repeat Simple_repeat 1 106 0 258 211 75 25 chr3 98097480 98097641 -119939517 + (GTTTG)n Simple_repeat Simple_repeat 2 170 0 230 0 33 0 chr3 98099219 98099249 -119937909 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1900 127 25 0 chr3 98099252 98099409 -119937749 - AluSx SINE Alu -21 291 122 333 0 0 0 chr3 98099409 98099446 -119937712 + (TG)n Simple_repeat Simple_repeat 2 38 0 1900 127 25 0 chr3 98099446 98099572 -119937586 - AluSx SINE Alu -190 122 1 931 211 72 23 chr3 98099584 98099920 -119937238 - MSTD LTR MaLR -2 394 2 2326 68 3 0 chr3 98100285 98100593 -119936565 + AluY SINE Alu 1 309 -2 202 111 0 44 chr3 98100836 98100881 -119936277 + (GGAA)n Simple_repeat Simple_repeat 3 45 0 442 363 44 16 chr3 98101268 98101519 -119935639 - MIR SINE MIR 0 262 5 24 32 0 0 chr3 98102556 98102587 -119934571 + AT_rich Low_complexity Low_complexity 1 31 0 22 80 0 0 chr3 98103082 98103132 -119934026 + AT_rich Low_complexity Low_complexity 1 50 0 463 330 42 16 chr3 98104021 98104212 -119932946 + MIR SINE MIR 47 242 -20 1810 129 14 29 chr3 98105610 98105912 -119931246 - AluSx SINE Alu 0 306 9 490 274 121 5 chr3 98105984 98106174 -119930984 - MIR SINE MIR -30 232 21 567 260 57 6 chr3 98106365 98106542 -119930616 + MER5A DNA MER1_type 4 189 0 1516 204 7 0 chr3 98106945 98107269 -119929889 - AluJb SINE Alu 0 326 1 24 0 0 0 chr3 98107929 98107953 -119929205 + AT_rich Low_complexity Low_complexity 1 24 0 384 366 33 0 chr3 98108099 98108252 -119928906 - MIR3 SINE MIR -6 202 45 2385 73 0 6 chr3 98108354 98108667 -119928491 - AluY SINE Alu 0 311 1 2023 123 0 3 chr3 98108671 98108964 -119928194 - AluY SINE Alu -19 292 1 24 0 0 0 chr3 98108970 98108994 -119928164 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr3 98109028 98109053 -119928105 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr3 98109085 98109108 -119928050 + AT_rich Low_complexity Low_complexity 1 23 0 189 333 157 20 chr3 98109237 98109390 -119927768 - MIR SINE MIR -15 247 74 361 309 8 24 chr3 98109584 98109710 -119927448 - MER5A DNA MER1_type -2 187 64 1724 119 0 125 chr3 98110032 98110417 -119926741 - MER1B DNA MER1_type 0 337 1 1254 172 46 108 chr3 98110678 98111003 -119926155 - AluJo SINE Alu -7 305 1 2208 176 16 28 chr3 98111982 98112419 -119924739 - Tigger2a DNA MER2_type -1 433 2 227 284 0 0 chr3 98113202 98113269 -119923889 + (TA)n Simple_repeat Simple_repeat 1 67 0 28 29 0 0 chr3 98113515 98113550 -119923608 + AT_rich Low_complexity Low_complexity 1 35 0 180 97 0 0 chr3 98114082 98114113 -119923045 + (TG)n Simple_repeat Simple_repeat 2 32 0 21 57 0 0 chr3 98114204 98114239 -119922919 + AT_rich Low_complexity Low_complexity 1 35 0 297 0 0 0 chr3 98115642 98115675 -119921483 + (CA)n Simple_repeat Simple_repeat 2 34 0 22 0 0 0 chr3 98115836 98115858 -119921300 + AT_rich Low_complexity Low_complexity 1 22 0 259 256 11 78 chr3 98116994 98117084 -119920074 + L2 LINE L2 3228 3311 -2 251 271 17 0 chr3 98117632 98117691 -119919467 - L2 LINE L2 -25 3288 3229 2108 100 7 0 chr3 98118200 98118490 -119918668 + AluSp SINE Alu 17 308 -5 288 0 0 0 chr3 98120154 98120186 -119916972 + (TC)n Simple_repeat Simple_repeat 1 32 0 507 142 9 28 chr3 98120195 98120301 -119916857 - L1MB3 LINE L1 -7 6176 6073 239 216 102 34 chr3 98121858 98121946 -119915212 + MIR SINE MIR 68 161 -101 23 78 0 0 chr3 98122002 98122053 -119915105 + AT_rich Low_complexity Low_complexity 1 51 0 222 361 59 0 chr3 98123280 98123399 -119913759 + MIR SINE MIR 108 233 -29 2437 188 40 58 chr3 98123814 98124361 -119912797 - MLT2B3 LTR ERVL -8 546 10 1142 70 0 37 chr3 98124609 98124796 -119912362 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1716 107 27 19 chr3 98124814 98125075 -119912083 - AluSx SINE Alu -11 301 39 2168 222 99 9 chr3 98125196 98125844 -119911314 - L1MD1 LINE L1 -87 6155 5441 219 69 0 0 chr3 98125907 98125936 -119911222 + (A)n Simple_repeat Simple_repeat 1 29 0 1836 153 34 0 chr3 98128222 98128516 -119908642 + AluSx SINE Alu 3 306 -6 2295 209 48 30 chr3 98128663 98129188 -119907970 - MLT2B3 LTR ERVL -20 534 1 1705 141 10 38 chr3 98129363 98129703 -119907455 - AluSx SINE Alu 0 332 1 2209 82 0 0 chr3 98131471 98131790 -119905368 + AluY SINE Alu 1 319 0 255 291 78 10 chr3 98132144 98132247 -119904911 + MIR SINE MIR 105 214 -48 25 65 0 0 chr3 98132342 98132388 -119904770 + AT_rich Low_complexity Low_complexity 1 46 0 1746 199 58 21 chr3 98133419 98133801 -119903357 + MSTD LTR MaLR 1 396 0 24 32 0 0 chr3 98133890 98133921 -119903237 + AT_rich Low_complexity Low_complexity 1 31 0 455 86 0 14 chr3 98134184 98134254 -119902904 + (TTCC)n Simple_repeat Simple_repeat 3 71 0 603 114 0 61 chr3 98134265 98134379 -119902779 - AluSg/x SINE Alu 0 312 206 201 74 0 0 chr3 98135260 98135287 -119901871 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 233 215 11 0 chr3 98136248 98136341 -119900817 + (TA)n Simple_repeat Simple_repeat 2 95 0 209 291 0 0 chr3 98136341 98136396 -119900762 + (TATG)n Simple_repeat Simple_repeat 3 57 0 285 259 47 12 chr3 98137312 98137397 -119899761 + MIR SINE MIR 175 262 0 306 0 0 0 chr3 98138394 98138428 -119898730 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1975 120 4 0 chr3 98138431 98138706 -119898452 - AluSc SINE Alu -33 276 1 989 222 16 40 chr3 98138983 98139235 -119897923 - MLT1A2 LTR MaLR -111 263 18 644 225 28 78 chr3 98139327 98139545 -119897613 + MIR SINE MIR 49 255 -7 2025 352 38 6 chr3 98141439 98141968 -119895190 + Tigger7 DNA MER2_type 1 546 -187 714 172 16 0 chr3 98141968 98142090 -119895068 + Tigger7 DNA MER2_type 2364 2487 0 301 261 98 65 chr3 98142207 98142391 -119894767 + MIR SINE MIR 63 252 -10 182 37 37 0 chr3 98142781 98142808 -119894350 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 325 111 56 0 chr3 98143101 98143155 -119894003 + MADE1 DNA Mariner 2 58 -22 271 320 131 85 chr3 98143735 98144041 -119893117 + L2 LINE L2 2949 3268 -4 2251 111 0 0 chr3 98144198 98144495 -119892663 - AluSx SINE Alu -15 297 1 466 205 66 36 chr3 98144519 98144685 -119892473 - L1ME1 LINE L1 -320 5846 5676 344 250 20 30 chr3 98145255 98145355 -119891803 - MER5C DNA MER1_type 0 324 226 219 187 28 140 chr3 98145376 98145404 -119891754 - MER5C DNA MER1_type -200 124 94 1479 160 45 13 chr3 98145404 98145716 -119891442 - MER33 DNA MER1_type 0 324 3 219 187 28 140 chr3 98145716 98145794 -119891364 - MER5C DNA MER1_type -230 94 30 744 308 60 91 chr3 98346111 98346647 -119690511 + L3 LINE CR1 947 1465 -112 1499 193 0 47 chr3 98346803 98347129 -119690029 + AluJb SINE Alu 1 312 0 203 133 0 0 chr3 98347233 98347263 -119689895 + (ATG)n Simple_repeat Simple_repeat 3 32 0 340 242 103 119 chr3 98347297 98347491 -119689667 - MIR SINE MIR -61 201 11 524 301 23 12 chr3 98348049 98348222 -119688936 + MIR SINE MIR 32 206 -56 233 98 24 0 chr3 98348236 98348277 -119688881 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 30 77 0 0 chr3 98349133 98349198 -119687960 + AT_rich Low_complexity Low_complexity 1 65 0 479 272 61 17 chr3 98349230 98349410 -119687748 + L2 LINE L2 2978 3165 -148 21 71 0 0 chr3 98349466 98349508 -119687650 + AT_rich Low_complexity Low_complexity 1 42 0 436 322 56 88 chr3 98349687 98349836 -119687322 - L2 LINE L2 0 3313 3161 2262 71 3 3 chr3 98349836 98350169 -119686989 - AluY SINE Alu 0 333 1 2070 111 7 10 chr3 98350169 98350457 -119686701 - AluSq SINE Alu -18 295 9 436 322 56 88 chr3 98350457 98350749 -119686409 - L2 LINE L2 -150 3163 2884 2075 129 39 20 chr3 98350750 98350917 -119686241 + THE1B LTR MaLR 1 163 -201 261 0 0 0 chr3 98350917 98350946 -119686212 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2075 129 39 20 chr3 98350946 98351135 -119686023 + THE1B LTR MaLR 163 364 0 11150 102 14 2 chr3 98351138 98352699 -119684459 + THE1B-int LTR MaLR 2 1580 0 2111 120 5 79 chr3 98352699 98353092 -119684066 + THE1B LTR MaLR 1 364 0 272 182 18 0 chr3 98353103 98353158 -119684000 - MER53 DNA DNA 0 189 134 24 0 0 0 chr3 98353305 98353329 -119683829 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 98353388 98353409 -119683749 + AT_rich Low_complexity Low_complexity 1 21 0 536 302 15 10 chr3 98353520 98353722 -119683436 + HAL1 LINE L1 120 322 -2185 1217 273 139 71 chr3 98353751 98355292 -119681866 + HAL1 LINE L1 433 2079 -428 415 220 32 110 chr3 98355308 98355526 -119681632 + HAL1 LINE L1 2302 2502 -5 263 367 22 0 chr3 98355557 98355647 -119681511 - L2 LINE L2 -689 2625 2534 2167 72 0 34 chr3 98356246 98356589 -119680569 + AluY SINE Alu 1 333 0 811 206 29 0 chr3 98359418 98359588 -119677570 - MER5B DNA MER1_type -2 176 2 260 223 116 18 chr3 98359947 98360059 -119677099 + MER4-int LTR ERV1 1041 1163 -5435 290 45 23 0 chr3 98361984 98362028 -119675130 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 1987 139 24 0 chr3 98362840 98363135 -119674023 + AluSx SINE Alu 1 302 -10 698 327 51 28 chr3 98363175 98363653 -119673505 - L2 LINE L2 -288 3025 2528 284 258 71 39 chr3 98363914 98364069 -119673089 + LTR33A LTR ERVL 364 523 0 775 284 47 18 chr3 98364874 98365149 -119672009 + ERVL LTR ERVL 1839 2121 -3643 352 323 15 8 chr3 98365167 98365300 -119671858 - ERVL LTR ERVL -3396 2368 2235 844 345 38 4 chr3 98365353 98365952 -119671206 + ERVL LTR ERVL 2352 3034 -2730 2007 208 26 24 chr3 98366007 98366506 -119670652 + MLT1D LTR MaLR 6 505 0 912 338 37 29 chr3 98366506 98367018 -119670140 + ERVL LTR ERVL 3108 3623 -2141 1007 337 71 30 chr3 98367112 98367949 -119669209 + ERVL LTR ERVL 4056 4976 -788 203 217 169 36 chr3 98369152 98369235 -119667923 - MIR SINE MIR -8 254 161 217 134 45 45 chr3 98369789 98369856 -119667302 + (TTTG)n Simple_repeat Simple_repeat 3 69 0 22 35 0 0 chr3 98369987 98370016 -119667142 + AT_rich Low_complexity Low_complexity 1 29 0 1268 225 177 12 chr3 98371099 98371499 -119665659 + L1MD2 LINE L1 5865 6330 -29 2450 88 0 0 chr3 98371632 98371938 -119665220 + AluSg SINE Alu 1 306 -4 2782 202 85 9 chr3 98371942 98372634 -119664524 - Cheshire DNA MER1_type -833 1587 843 347 260 0 42 chr3 98372641 98372737 -119664421 - Cheshire DNA MER1_type -2328 92 1 315 224 15 8 chr3 98372814 98372948 -119664210 + (TA)n Simple_repeat Simple_repeat 1 135 0 1651 230 103 32 chr3 98373057 98373658 -119663500 - MER63C DNA MER1_type -6 924 281 494 290 98 0 chr3 98375050 98375305 -119661853 + L1ME LINE L1 5540 5819 -302 244 102 17 34 chr3 98375347 98375406 -119661752 + (CAAAAA)n Simple_repeat Simple_repeat 2 59 0 242 269 19 48 chr3 98376030 98376134 -119661024 + MLT1H LTR MaLR 430 530 -19 241 283 156 22 chr3 98376463 98376643 -119660515 - L2 LINE L2 -341 2973 2770 1847 226 68 43 chr3 98378190 98378676 -119658482 - MLT1D LTR MaLR -7 498 1 488 211 123 23 chr3 98379871 98380042 -119657116 + MER53 DNA DNA 2 189 0 398 291 30 22 chr3 98380167 98380301 -119656857 - MER63A DNA MER1_type 0 210 76 28 48 0 0 chr3 98381132 98381174 -119655984 + AT_rich Low_complexity Low_complexity 1 42 0 365 319 134 9 chr3 98381328 98381544 -119655614 - L2 LINE L2 -140 3173 2931 1796 188 0 3 chr3 98381879 98382183 -119654975 + AluJo SINE Alu 1 303 -9 2401 94 0 0 chr3 98382435 98382743 -119654415 - AluSg SINE Alu -2 308 1 195 42 0 0 chr3 98383086 98383110 -119654048 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 289 286 71 0 chr3 98383552 98383664 -119653494 - MIR SINE MIR -131 131 12 2087 33 0 8 chr3 98384002 98384245 -119652913 - AluYb8 SINE Alu -4 314 74 249 366 30 0 chr3 98385249 98385380 -119651778 + MIR SINE MIR 118 252 -10 233 361 113 8 chr3 98385598 98385731 -119651427 - MIR3 SINE MIR -24 184 38 270 325 86 8 chr3 98385846 98385963 -119651195 - MIR3 SINE MIR -45 163 38 38 89 0 0 chr3 98386836 98386937 -119650221 + AT_rich Low_complexity Low_complexity 1 101 0 24 53 0 0 chr3 98386979 98387017 -119650141 + AT_rich Low_complexity Low_complexity 1 38 0 265 347 77 28 chr3 98388076 98388361 -119648797 - L2 LINE L2 -1152 2162 1864 22 0 0 0 chr3 98388628 98388650 -119648508 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr3 98389671 98389692 -119647466 + (GA)n Simple_repeat Simple_repeat 2 22 0 357 272 72 16 chr3 98389907 98390032 -119647126 + MIR3 SINE MIR 61 192 -16 314 272 29 10 chr3 98392804 98392907 -119644251 + MER69A DNA AcHobo 3 107 -70 1060 75 54 14 chr3 98393264 98393398 -119643760 + MER107 DNA MER1_type 4 146 -51 182 36 0 36 chr3 98393398 98393426 -119643732 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1060 75 54 14 chr3 98393426 98393438 -119643720 + MER107 DNA MER1_type 146 156 -41 21 71 0 0 chr3 98393661 98393703 -119643455 + AT_rich Low_complexity Low_complexity 1 42 0 194 367 56 0 chr3 98393720 98393810 -119643348 - L3 LINE CR1 -3 1574 1480 1345 226 29 3 chr3 98393867 98394177 -119642981 + MER58B DNA MER1_type 18 335 -6 834 166 55 127 chr3 98394308 98394528 -119642630 - L1MD2 LINE L1 -16 6343 6150 2141 119 0 23 chr3 98394528 98394838 -119642320 - AluSq SINE Alu -8 305 3 834 166 55 127 chr3 98394838 98394924 -119642234 - L1MD2 LINE L1 -209 6150 6059 249 262 6 37 chr3 98395342 98395510 -119641648 + GA-rich Low_complexity Low_complexity 1 162 0 661 256 50 16 chr3 98395519 98395718 -119641440 - L1MD3 LINE L1 -115 7880 7670 207 0 0 0 chr3 98395718 98395741 -119641417 + (TTG)n Simple_repeat Simple_repeat 2 24 0 661 256 50 16 chr3 98395741 98395783 -119641375 - L1MD3 LINE L1 -325 7670 7631 2412 206 90 93 chr3 98398390 98399555 -119637603 + HERVL32 LTR ERVL 1987 3213 -205 326 322 13 20 chr3 98400088 98400240 -119636918 + PRIMA41-int LTR ERV1 6327 6477 -1279 351 242 65 8 chr3 98400251 98400375 -119636783 + HERVL32 LTR ERVL 3288 3418 0 1467 171 128 20 chr3 98400375 98400679 -119636479 + LTR32 LTR ERVL 13 349 -122 877 171 0 19 chr3 98400774 98400932 -119636226 + LTR32 LTR ERVL 317 471 0 227 348 36 0 chr3 98401202 98401314 -119635844 - L2 LINE L2 -241 3031 2916 301 372 160 8 chr3 98401432 98401795 -119635363 - L2 LINE L2 -527 2787 2370 2181 90 31 0 chr3 98402350 98402640 -119634518 + AluSp SINE Alu 3 301 -12 581 290 121 5 chr3 98402704 98402911 -119634247 - MIR SINE MIR -1 261 31 2320 188 43 23 chr3 98402934 98403417 -119633741 - MLT1D LTR MaLR 0 505 13 2006 49 42 70 chr3 98404917 98405204 -119631954 - AluY SINE Alu -11 300 22 188 167 0 71 chr3 98405509 98405551 -119631607 + L2 LINE L2 3230 3268 -4 229 254 51 0 chr3 98405996 98406055 -119631103 + MIR3 SINE MIR 111 172 -36 301 277 59 20 chr3 98406153 98406254 -119630904 - L2 LINE L2 -2 3311 3207 22 56 0 0 chr3 98406254 98406290 -119630868 + AT_rich Low_complexity Low_complexity 1 36 0 393 116 0 0 chr3 98407242 98407311 -119629847 + (GA)n Simple_repeat Simple_repeat 1 69 0 279 79 0 0 chr3 98407587 98407625 -119629533 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 1163 170 5 15 chr3 98407642 98407842 -119629316 - AluJo SINE Alu -30 282 85 23 33 0 0 chr3 98407954 98407984 -119629174 + AT_rich Low_complexity Low_complexity 1 30 0 265 299 56 49 chr3 98408155 98408299 -119628859 - MIR SINE MIR -70 192 48 24 53 0 0 chr3 98408585 98408623 -119628535 + AT_rich Low_complexity Low_complexity 1 38 0 2436 32 0 0 chr3 98409350 98409673 -119627485 + AluY SINE Alu 1 323 0 280 343 39 0 chr3 98409937 98410039 -119627119 - MIR3 SINE MIR -28 180 75 212 360 9 9 chr3 98411975 98412089 -119625069 + L2 LINE L2 2687 2800 -514 281 396 19 7 chr3 98412138 98412292 -119624866 + L2 LINE L2 2904 3059 -213 231 298 24 24 chr3 98412974 98413058 -119624100 + L2 LINE L2 3188 3271 -1 279 0 0 0 chr3 98413416 98413447 -119623711 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 324 176 0 0 chr3 98413722 98413790 -119623368 + GA-rich Low_complexity Low_complexity 1 68 0 42090 51 8 2 chr3 98414044 98420162 -119616996 - L1PA4 LINE L1 -1 6154 1 365 278 33 11 chr3 98420529 98420619 -119616539 - MIR SINE MIR -154 108 17 296 203 62 0 chr3 98421634 98421698 -119615460 + MIR SINE MIR 68 135 -127 453 204 118 13 chr3 98421816 98421968 -119615190 + MER53 DNA DNA 3 170 -19 414 344 163 18 chr3 98422357 98422949 -119614209 - L2 LINE L2 -7 3306 2624 411 298 68 25 chr3 98423583 98423744 -119613414 - MLT1I LTR MaLR -2 407 240 5840 157 11 17 chr3 98423835 98424919 -119612239 - L1MC1 LINE L1 -2 6331 5254 405 143 43 0 chr3 98424932 98425002 -119612156 + L1MC1 LINE L1 5162 5234 -912 374 279 10 19 chr3 98425005 98425109 -119612049 - MLT1I LTR MaLR -225 184 82 1651 216 27 17 chr3 98425196 98425609 -119611549 + L1ME1 LINE L1 5743 6159 -7 22 35 0 0 chr3 98425611 98425640 -119611518 + AT_rich Low_complexity Low_complexity 1 29 0 8876 186 32 28 chr3 98425701 98428634 -119608524 + L1MA4 LINE L1 3360 6298 -2 34 55 0 0 chr3 98428773 98428828 -119608330 + AT_rich Low_complexity Low_complexity 1 55 0 1820 198 3 24 chr3 98429281 98429654 -119607504 - MLT1A1 LTR MaLR 0 365 1 202 352 124 0 chr3 98430645 98430750 -119606408 + MIR3 SINE MIR 85 202 -6 180 111 0 0 chr3 98431476 98431503 -119605655 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 462 232 0 20 chr3 98431698 98431797 -119605361 + L2 LINE L2 3213 3309 -4 447 19 0 0 chr3 98432640 98432692 -119604466 + (TA)n Simple_repeat Simple_repeat 2 53 0 341 352 78 0 chr3 98432692 98432871 -119604287 + MIR SINE MIR 64 256 -6 1837 236 27 44 chr3 98432975 98433501 -119603657 + LTR40a LTR ERVL 1 517 -2 227 333 37 37 chr3 98433718 98433799 -119603359 + L2 LINE L2 3172 3252 -20 491 333 75 56 chr3 98434190 98434550 -119602608 - L3 LINE CR1 -205 1372 1006 386 221 233 12 chr3 98435841 98435989 -119601169 - MER5A DNA MER1_type 0 189 4 828 242 150 0 chr3 98436710 98436937 -119600221 + MIR SINE MIR 1 261 -1 22 0 0 0 chr3 98437137 98437159 -119599999 + AT_rich Low_complexity Low_complexity 1 22 0 216 204 0 0 chr3 98438282 98438326 -119598832 + T-rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chr3 98438326 98438356 -119598802 + AT_rich Low_complexity Low_complexity 1 30 0 321 281 0 0 chr3 98438434 98438498 -119598660 + tRNA-Ile-ATT tRNA tRNA 1 64 -13 22 35 0 0 chr3 98438747 98438776 -119598382 + AT_rich Low_complexity Low_complexity 1 29 0 592 76 8 137 chr3 98438849 98438980 -119598178 - L1MA7 LINE L1 -6 6285 6172 198 0 0 0 chr3 98439553 98439575 -119597583 + (A)n Simple_repeat Simple_repeat 1 22 0 453 332 67 27 chr3 98439619 98439917 -119597241 - L2 LINE L2 -1151 2163 1854 226 238 48 16 chr3 98440158 98440221 -119596937 + Zaphod DNA AcHobo 4 68 -3963 1612 210 62 69 chr3 98440323 98440827 -119596331 - MLT1D LTR MaLR 0 505 6 595 115 70 0 chr3 98441660 98441817 -119595341 + (TA)n Simple_repeat Simple_repeat 1 168 0 264 279 0 13 chr3 98441821 98441900 -119595258 + (TATATG)n Simple_repeat Simple_repeat 4 81 0 239 366 0 50 chr3 98441912 98442013 -119595145 + MIR SINE MIR 20 115 -93 180 366 153 8 chr3 98442921 98443052 -119594106 - L2 LINE L2 -1 3271 3122 431 337 106 31 chr3 98443509 98443924 -119593234 - L2 LINE L2 -674 2640 2195 245 241 0 0 chr3 98444080 98444134 -119593024 + (TG)n Simple_repeat Simple_repeat 2 55 0 1156 170 65 124 chr3 98444193 98444255 -119592903 - MLT1B LTR MaLR 0 390 326 2278 73 20 7 chr3 98444255 98444557 -119592601 + AluSq SINE Alu 1 306 -7 1156 170 65 124 chr3 98444557 98444906 -119592252 - MLT1B LTR MaLR -64 326 3 1710 173 3 20 chr3 98445065 98445365 -119591793 + AluJb SINE Alu 1 295 -17 326 298 93 87 chr3 98446168 98446628 -119590530 - L1M2 LINE L1 -5707 1142 680 29 28 0 0 chr3 98448380 98448416 -119588742 + AT_rich Low_complexity Low_complexity 1 36 0 492 128 0 0 chr3 98448579 98448657 -119588501 + (T)n Simple_repeat Simple_repeat 1 78 0 28 29 0 0 chr3 98449486 98449521 -119587637 + AT_rich Low_complexity Low_complexity 1 35 0 648 38 0 0 chr3 98449686 98449765 -119587393 + (T)n Simple_repeat Simple_repeat 1 79 0 296 356 89 0 chr3 98451171 98451306 -119585852 - MIR3 SINE MIR -19 189 43 276 149 0 0 chr3 98452328 98452375 -119584783 + (TG)n Simple_repeat Simple_repeat 2 48 0 209 419 16 0 chr3 98453600 98453729 -119583429 + L2 LINE L2 3142 3272 0 853 288 25 14 chr3 98453785 98454070 -119583088 - MARNA DNA Mariner -49 537 250 205 311 0 67 chr3 98454432 98454522 -119582636 + MIR SINE MIR 22 105 -157 1444 136 42 90 chr3 98454719 98455029 -119582129 + AluJb SINE Alu 1 295 -17 2248 95 0 10 chr3 98455960 98456265 -119580893 + AluSq SINE Alu 1 302 -11 192 135 0 0 chr3 98456529 98456566 -119580592 + (TG)n Simple_repeat Simple_repeat 2 38 0 254 318 16 0 chr3 98457717 98457780 -119579378 - MIR3 SINE MIR -13 195 132 310 267 53 23 chr3 98458398 98458529 -119578629 - L1ME4a LINE L1 -9 6112 5978 592 293 24 0 chr3 98458664 98458828 -119578330 + MIR SINE MIR 58 225 -37 29 60 0 0 chr3 98458828 98458878 -119578280 + AT_rich Low_complexity Low_complexity 1 50 0 273 75 0 0 chr3 98459295 98459335 -119577823 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 267 79 0 0 chr3 98459666 98459704 -119577454 + (GGA)n Simple_repeat Simple_repeat 2 39 0 861 185 62 6 chr3 98460661 98460839 -119576319 + MER5A DNA MER1_type 2 189 0 209 371 38 29 chr3 98460846 98460951 -119576207 + MER5A DNA MER1_type 55 160 -29 239 130 0 22 chr3 98461120 98461166 -119575992 + (TCCC)n Simple_repeat Simple_repeat 4 48 0 226 226 38 0 chr3 98461172 98461225 -119575933 + T-rich Low_complexity Low_complexity 2 56 0 616 360 46 0 chr3 98462030 98462269 -119574889 - L2 LINE L2 -233 3080 2831 2248 63 0 30 chr3 98462280 98462579 -119574579 - AluSq SINE Alu -19 294 5 228 348 9 36 chr3 98462848 98462960 -119574198 + MIR3 SINE MIR 91 199 -9 196 312 43 71 chr3 98463034 98463175 -119573983 + L3b LINE CR1 1108 1244 -339 461 345 38 36 chr3 98463180 98463422 -119573736 + MIR SINE MIR 2 248 -14 2067 131 0 7 chr3 98463986 98464291 -119572867 + AluSx SINE Alu 1 303 -9 198 321 45 60 chr3 98467487 98467621 -119569537 - MIR3 SINE MIR -52 156 25 402 21 0 0 chr3 98467884 98467931 -119569227 + (TG)n Simple_repeat Simple_repeat 2 48 0 384 310 120 10 chr3 98468449 98468649 -119568509 + MIR SINE MIR 41 262 0 423 0 0 0 chr3 98468683 98468730 -119568428 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 228 135 0 0 chr3 98469587 98469624 -119567534 + (CCA)n Simple_repeat Simple_repeat 2 38 0 289 360 0 16 chr3 98470308 98470433 -119566725 + CT-rich Low_complexity Low_complexity 5 127 0 468 0 0 0 chr3 98471580 98471632 -119565526 + (TA)n Simple_repeat Simple_repeat 1 52 0 241 331 110 21 chr3 98471649 98471794 -119565364 - MIR SINE MIR -74 188 31 888 312 90 14 chr3 98472430 98472843 -119564315 - LTR16A LTR ERVL 0 450 7 2172 99 13 3 chr3 98473224 98473528 -119563630 - AluSg SINE Alu -3 307 1 1718 193 30 22 chr3 98473562 98473924 -119563234 - MLT1A1 LTR MaLR 0 365 1 1183 204 47 47 chr3 98474063 98474401 -119562757 - MER58B DNA MER1_type 0 341 4 705 276 97 13 chr3 98474530 98474758 -119562400 + MIR SINE MIR 12 258 -4 1785 217 31 29 chr3 98474807 98475290 -119561868 - L1MB7 LINE L1 -17 6167 5684 189 0 0 0 chr3 98475290 98475311 -119561847 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 1205 118 0 6 chr3 98475311 98475480 -119561678 - AluSq SINE Alu -31 282 115 741 173 0 14 chr3 98475531 98475670 -119561488 - AluSg1 SINE Alu -172 137 1 317 243 27 0 chr3 98475671 98475745 -119561413 - L1MB7 LINE L1 -484 5694 5619 47 33 0 0 chr3 98475814 98475875 -119561283 + AT_rich Low_complexity Low_complexity 1 61 0 263 243 29 58 chr3 98475967 98476070 -119561088 - MER96 DNA MER1_type? -1 174 75 251 254 71 24 chr3 98476381 98476507 -119560651 - MER103 DNA DNA 0 166 35 318 50 0 0 chr3 98477433 98477473 -119559685 + (TA)n Simple_repeat Simple_repeat 2 41 0 279 368 42 14 chr3 98480026 98480238 -119556920 + L1MC/D LINE L1 5510 5727 -2081 21 36 0 0 chr3 98480615 98480643 -119556515 + AT_rich Low_complexity Low_complexity 1 28 0 256 263 26 13 chr3 98480782 98480858 -119556300 + MIR SINE MIR 70 146 -116 2469 47 3 22 chr3 98481584 98481901 -119555257 - AluY SINE Alu 0 311 1 2234 93 0 26 chr3 98482715 98483025 -119554133 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr3 98484436 98484457 -119552701 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr3 98484974 98484994 -119552164 + (TG)n Simple_repeat Simple_repeat 2 21 0 248 301 98 13 chr3 98485003 98485156 -119552002 + L1MC/D LINE L1 5741 5906 -1902 1033 189 47 4 chr3 98486862 98487179 -119549979 + MLT1A1 LTR MaLR 1 364 -1 361 329 176 14 chr3 98487922 98488132 -119549026 + MIR SINE MIR 11 254 -8 2527 61 0 3 chr3 98488549 98488861 -119548297 - AluY SINE Alu 0 311 1 28 0 0 0 chr3 98489404 98489432 -119547726 + AT_rich Low_complexity Low_complexity 1 28 0 551 15 0 0 chr3 98489819 98489887 -119547271 - L1PA3 LINE L1 -4 6151 6084 669 188 7 7 chr3 98490289 98490443 -119546715 + L1MA9 LINE L1 6157 6310 -2 261 0 0 0 chr3 98492518 98492547 -119544611 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1716 158 0 39 chr3 98493855 98494165 -119542993 + AluJo SINE Alu 1 298 -14 297 51 0 0 chr3 98495370 98495409 -119541749 + (CA)n Simple_repeat Simple_repeat 1 39 0 27 29 0 0 chr3 98497579 98497613 -119539545 + AT_rich Low_complexity Low_complexity 1 34 0 1335 187 130 64 chr3 98498376 98498737 -119538421 - MLT1D LTR MaLR -3 623 287 356 21 42 0 chr3 98498737 98498785 -119538373 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 2027 103 4 4 chr3 98498785 98499056 -119538102 - AluSc SINE Alu -33 276 6 1335 187 130 64 chr3 98499056 98499163 -119537995 - MLT1D LTR MaLR -338 288 1 644 182 0 0 chr3 98500145 98500277 -119536881 + L1MA9 LINE L1 6181 6312 0 381 264 12 104 chr3 98501633 98501733 -119535425 + MIR SINE MIR 50 131 -131 2128 114 17 0 chr3 98501733 98502030 -119535128 - AluSg SINE Alu -8 302 1 381 264 12 104 chr3 98502030 98502092 -119535066 + MIR SINE MIR 131 197 -65 1629 144 144 28 chr3 98502188 98502514 -119534644 + THE1B LTR MaLR 1 364 0 5779 107 36 1 chr3 98502514 98503357 -119533801 + THE1B-int LTR MaLR 1 872 -708 3234 83 5 0 chr3 98503359 98503795 -119533363 + HERVL-A2 LTR ERVL 5217 5654 0 819 61 17 0 chr3 98503795 98503910 -119533248 + MLT2A2 LTR ERVL 1 117 -336 333 102 0 0 chr3 98503910 98503969 -119533189 + (TA)n Simple_repeat Simple_repeat 1 59 0 229 171 0 0 chr3 98503974 98504015 -119533143 + MLT2A2 LTR ERVL 413 453 0 196 154 26 0 chr3 98504017 98504056 -119533102 - MIR SINE MIR -175 87 48 310 248 216 0 chr3 98504685 98504810 -119532348 + MIR SINE MIR 61 212 -50 335 337 129 15 chr3 98504870 98505072 -119532086 - MIR SINE MIR -31 231 7 324 94 0 0 chr3 98505411 98505464 -119531694 + (TG)n Simple_repeat Simple_repeat 2 54 0 726 173 96 29 chr3 98506035 98506243 -119530915 - MER69 DNA AcHobo -7 2519 2298 999 258 139 47 chr3 98506266 98506777 -119530381 - MER69 DNA AcHobo -668 558 1 1732 172 0 30 chr3 98506917 98507220 -119529938 + AluSx SINE Alu 5 298 -14 277 375 23 31 chr3 98507596 98507724 -119529434 + MIR3 SINE MIR 61 187 -21 800 266 129 28 chr3 98509044 98509401 -119527757 + LTR33A LTR ERVL 117 509 -14 1291 317 110 61 chr3 98510576 98512081 -119525077 + ERVL LTR ERVL 1280 2968 -2796 441 235 45 23 chr3 98512143 98512275 -119524883 + ERVL LTR ERVL 4397 4531 -1233 444 333 39 20 chr3 98512310 98512514 -119524644 + ERVL LTR ERVL 4616 4823 -941 1701 182 33 25 chr3 98513199 98513562 -119523596 - MLT2D LTR ERVL -48 366 1 22 0 0 0 chr3 98513590 98513612 -119523546 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr3 98515518 98515549 -119521609 + AT_rich Low_complexity Low_complexity 1 31 0 184 284 93 72 chr3 98518702 98518938 -119518220 + L2 LINE L2 2259 2499 -815 307 286 0 0 chr3 98519323 98519407 -119517751 + MIR SINE MIR 44 127 -135 325 342 47 0 chr3 98519466 98519615 -119517543 + MIR SINE MIR 105 260 -2 24 32 0 0 chr3 98519617 98519648 -119517510 + AT_rich Low_complexity Low_complexity 1 31 0 234 0 0 0 chr3 98519923 98519949 -119517209 + (CA)n Simple_repeat Simple_repeat 2 27 0 470 278 153 17 chr3 98519989 98520165 -119516993 - MIR SINE MIR -60 202 3 239 318 16 0 chr3 98520198 98520261 -119516897 + MIR3 SINE MIR 144 207 -1 1930 141 120 26 chr3 98521402 98521793 -119515365 - MSTA LTR MaLR 0 428 1 187 338 13 13 chr3 98522828 98522905 -119514253 - MIR SINE MIR -10 252 176 436 263 216 43 chr3 98522928 98523183 -119513975 - LTR16C LTR ERVL -53 438 140 488 349 32 61 chr3 98523456 98524112 -119513046 - HERV16 LTR ERVL -384 5380 4744 755 369 85 9 chr3 98524269 98524800 -119512358 - HERV16 LTR ERVL -2716 2280 1710 413 365 60 33 chr3 98524874 98525175 -119511983 - HERV16 LTR ERVL -3422 1574 1266 225 271 221 8 chr3 98525595 98525717 -119511441 - LTR16C LTR ERVL -33 458 311 1289 230 166 21 chr3 98575723 98576304 -119460854 - LTR50 LTR ERVL -91 704 1 229 263 123 73 chr3 98576471 98576647 -119460511 - L3 LINE CR1 -759 818 634 533 309 20 0 chr3 98576647 98576799 -119460359 - MER5A DNA MER1_type 0 189 35 2234 170 4 93 chr3 98576996 98577491 -119459667 + LTR32 LTR ERVL 21 471 0 280 321 22 15 chr3 98578201 98578338 -119458820 + MIR SINE MIR 125 262 0 219 200 0 0 chr3 98578920 98578955 -119458203 - MER5B DNA MER1_type -10 168 134 219 269 32 65 chr3 98578935 98579028 -119458130 + MER5B DNA MER1_type 89 178 0 200 331 48 32 chr3 98579236 98579360 -119457798 - L2 LINE L2 -9 3304 3179 389 236 121 55 chr3 98579402 98579567 -119457591 - MER5B DNA MER1_type 0 178 3 507 249 135 27 chr3 98579690 98579875 -119457283 - MIR SINE MIR -55 207 3 639 268 93 16 chr3 98579945 98580128 -119457030 + MIR SINE MIR 5 201 -61 355 244 12 0 chr3 98580265 98580347 -119456811 - MER94 DNA DNA -35 99 17 845 275 98 68 chr3 98582420 98582889 -119454269 - MLT1G1 LTR MaLR -2 593 111 21 0 0 0 chr3 98583004 98583025 -119454133 + AT_rich Low_complexity Low_complexity 1 21 0 1710 108 63 71 chr3 98584598 98584976 -119452182 + THE1C LTR MaLR 1 375 0 189 207 86 69 chr3 98585193 98585251 -119451907 - L2 LINE L2 -2 3270 3212 429 70 0 0 chr3 98586054 98586111 -119451047 + (TG)n Simple_repeat Simple_repeat 2 58 0 1853 116 0 8 chr3 98587893 98588152 -119449006 - AluSc SINE Alu -52 257 1 652 117 11 0 chr3 98588247 98588341 -119448817 + AluJ/FLAM SINE Alu 3 97 -215 1592 192 6 16 chr3 98589121 98589433 -119447725 + AluJo SINE Alu 3 311 -1 1684 173 6 16 chr3 98589642 98589954 -119447204 + AluJo SINE Alu 3 311 -1 242 326 65 29 chr3 98590856 98590994 -119446164 - MIR SINE MIR -8 254 112 201 321 74 0 chr3 98591219 98591300 -119445858 - L2 LINE L2 -27 3245 3159 260 215 32 65 chr3 98591583 98591676 -119445482 + MLT1L LTR MaLR 526 615 0 25 31 0 0 chr3 98592280 98592312 -119444846 + AT_rich Low_complexity Low_complexity 1 32 0 231 303 152 8 chr3 98593275 98593407 -119443751 + MIR3 SINE MIR 45 195 -13 194 296 30 118 chr3 98593694 98593829 -119443329 - L2 LINE L2 -1 3271 3149 7015 144 120 6 chr3 98594020 98595325 -119441833 - Tigger1 DNA MER2_type 0 2418 965 1320 193 39 35 chr3 98595335 98595589 -119441569 + AluJo SINE Alu 36 290 -22 5520 133 10 14 chr3 98595602 98596473 -119440685 - Tigger1 DNA MER2_type -1445 973 106 508 108 0 24 chr3 98596473 98596556 -119440602 - MSTA LTR MaLR 0 428 348 212 350 103 51 chr3 98597184 98597676 -119439482 - L2 LINE L2 -185 3087 2582 542 244 26 106 chr3 98598115 98598492 -119438666 - L1ME4a LINE L1 -217 5904 5558 21 0 0 0 chr3 98598658 98598679 -119438479 + AT_rich Low_complexity Low_complexity 1 21 0 578 319 88 4 chr3 98599070 98599296 -119437862 - MIR SINE MIR 0 262 18 2079 243 40 23 chr3 98599382 98599937 -119437221 - MER90 LTR ERV1 0 575 12 2249 97 0 3 chr3 98599969 98600267 -119436891 + AluY SINE Alu 1 297 -14 470 330 222 4 chr3 98601012 98601242 -119435916 + L2 LINE L2 2993 3272 0 5624 112 12 0 chr3 98601452 98602276 -119434882 - L1PA15 LINE L1 0 6165 5332 1890 192 37 38 chr3 98602276 98602823 -119434335 - MLT2A2 LTR ERVL 0 554 2 6584 200 18 4 chr3 98602849 98604257 -119432901 - L1P LINE L1 -810 5336 3909 22 35 0 0 chr3 98604934 98604963 -119432195 + AT_rich Low_complexity Low_complexity 1 29 0 518 288 0 0 chr3 98605715 98605840 -119431318 - MIR SINE MIR -137 125 1 1211 208 57 60 chr3 98606315 98606681 -119430477 + MLT1A1 LTR MaLR 1 365 0 473 276 131 37 chr3 98606722 98606990 -119430168 + LTR33 LTR ERVL 135 427 -94 2020 220 30 45 chr3 98607463 98608022 -119429136 - L1ME1 LINE L1 -5 6161 5611 507 228 147 7 chr3 98608032 98608168 -119428990 + MIR SINE MIR 106 260 -2 672 270 175 9 chr3 98610223 98610549 -119426609 + L2 LINE L2 2933 3312 -1 1884 135 61 9 chr3 98611549 98611875 -119425283 + MER61A LTR ERV1 1 343 0 1976 178 81 23 chr3 98611875 98612347 -119424811 + MER61A-int LTR ERV1 1 499 -4718 344 158 40 26 chr3 98612415 98612491 -119424667 + MER61A-int LTR ERV1 631 707 -4510 349 47 0 0 chr3 98612521 98612564 -119424594 + MER61A-int LTR ERV1 1320 1362 -3855 * 23603 105 39 14 chr3 98612561 98616254 -119420904 + MER61A-int LTR ERV1 1655 5217 0 1803 140 71 9 chr3 98616255 98616577 -119420581 + MER61A LTR ERV1 2 343 0 21 36 0 0 chr3 98617362 98617390 -119419768 + AT_rich Low_complexity Low_complexity 1 28 0 2699 101 12 229 chr3 98617893 98618228 -119418930 + MER51A LTR ERV1 1 60 -574 1920 139 0 0 chr3 98618228 98618515 -119418643 + AluY SINE Alu 23 309 -2 2699 101 12 229 chr3 98618515 98618988 -119418170 + MER51A LTR ERV1 60 634 0 1483 148 93 17 chr3 98619583 98619897 -119417261 - MSTA LTR MaLR -56 319 1 6712 201 98 43 chr3 98619897 98621394 -119415764 - MSTA-int LTR MaLR 0 1580 3 1744 144 199 14 chr3 98621396 98621757 -119415401 - MSTA LTR MaLR 0 428 1 563 246 76 71 chr3 98623271 98623482 -119413676 - MIR SINE MIR -46 216 5 360 273 234 7 chr3 98624408 98624562 -119412596 - MER5A DNA MER1_type 0 189 1 392 295 87 60 chr3 98625000 98625275 -119411883 + MLT1E LTR MaLR 1 282 -285 827 312 109 5 chr3 98626431 98626825 -119410333 - L1ME4a LINE L1 -189 5932 5498 1953 111 20 79 chr3 98626925 98627278 -119409880 + MLT2A1 LTR ERVL 103 434 -10 1689 168 21 0 chr3 98627307 98627592 -119409566 - AluJo SINE Alu -11 301 11 434 156 0 13 chr3 98627600 98627677 -119409481 + MLT1B LTR MaLR 315 390 0 312 188 0 0 chr3 98628376 98628440 -119408718 + GA-rich Low_complexity Low_complexity 4 67 0 1362 186 8 8 chr3 98629251 98629499 -119407659 + AluSx SINE Alu 40 287 -25 25 31 0 0 chr3 98629499 98629531 -119407627 + AT_rich Low_complexity Low_complexity 1 32 0 967 138 25 109 chr3 98629938 98630177 -119406981 + MER20 DNA MER1_type 1 219 0 348 43 0 0 chr3 98631003 98631049 -119406109 + (CA)n Simple_repeat Simple_repeat 2 47 0 2355 121 31 8 chr3 98633289 98633645 -119403513 - THE1B LTR MaLR 0 364 1 255 290 142 59 chr3 98634937 98635106 -119402052 + MIR SINE MIR 34 216 -46 21 0 0 0 chr3 98635125 98635146 -119402012 + AT_rich Low_complexity Low_complexity 1 21 0 2077 256 72 10 chr3 98635307 98636126 -119401032 - L1ME4a LINE L1 -779 5367 4498 1041 278 52 3 chr3 98636142 98636491 -119400667 - L1ME4a LINE L1 -1736 4410 4045 224 234 16 16 chr3 98638000 98638064 -119399094 + (TG)n Simple_repeat Simple_repeat 1 64 0 * 249 298 0 11 chr3 98638063 98638157 -119399001 + GA-rich Low_complexity Low_complexity 1 93 0 283 317 12 0 chr3 98638290 98638372 -119398786 + MER5A DNA MER1_type 9 91 -98 216 0 0 0 chr3 98638539 98638563 -119398595 + (TA)n Simple_repeat Simple_repeat 2 25 0 321 225 26 73 chr3 98638643 98638794 -119398364 + MER104 DNA Tc2 7 150 -30 254 291 209 7 chr3 98638876 98639024 -119398134 - MIR SINE MIR 0 262 85 228 318 0 0 chr3 98639402 98639465 -119397693 - MIR SINE MIR 0 262 200 821 140 0 0 chr3 98639506 98639620 -119397538 - FLAM_C SINE Alu -19 124 11 202 277 112 42 chr3 98639623 98639719 -119397439 - MIR SINE MIR -49 159 58 336 268 52 0 chr3 98639815 98639912 -119397246 - MER94 DNA DNA -16 118 17 260 303 0 0 chr3 98641433 98641499 -119395659 + L2 LINE L2 3248 3313 0 449 332 81 24 chr3 98641537 98641784 -119395374 - MIR SINE MIR -1 261 1 2110 100 14 0 chr3 98642052 98642373 -119394785 - AluSp SINE Alu 0 325 1 468 195 81 16 chr3 98642458 98642581 -119394577 - Charlie1 DNA MER1_type -1 2760 2630 * 890 268 18 4 chr3 98642571 98642799 -119394359 - Charlie1 DNA MER1_type -2530 231 1 673 249 33 95 chr3 98644722 98644963 -119392195 + MIR SINE MIR 11 236 -26 25 0 0 0 chr3 98645779 98645804 -119391354 + AT_rich Low_complexity Low_complexity 1 25 0 1097 287 55 46 chr3 98646003 98646477 -119390681 - MLT1H LTR MaLR 0 549 72 1829 191 11 3 chr3 98646634 98646995 -119390163 - MER47A DNA MER2_type -2 364 1 270 284 35 43 chr3 98647636 98647752 -119389406 + L2 LINE L2 2364 2478 -836 1758 136 91 26 chr3 98647780 98648132 -119389026 + THE1C LTR MaLR 1 375 0 9231 135 60 4 chr3 98648132 98649628 -119387530 + THE1C-int LTR MaLR 1 1580 0 1142 108 72 42 chr3 98649630 98649874 -119387284 + THE1C LTR MaLR 3 260 -95 2228 99 0 0 chr3 98654211 98654503 -119382655 - AluSx SINE Alu 0 312 21 28 29 0 0 chr3 98656424 98656459 -119380699 + AT_rich Low_complexity Low_complexity 1 35 0 736 230 62 38 chr3 98657749 98657958 -119379200 - MER20 DNA MER1_type -5 214 1 1412 189 27 95 chr3 98658181 98658582 -119378576 - MLT1A2 LTR MaLR 0 374 1 22 80 0 0 chr3 98658803 98658853 -119378305 + AT_rich Low_complexity Low_complexity 1 50 0 245 281 37 0 chr3 98659060 98659142 -119378016 + L1ME3A LINE L1 6086 6170 0 229 303 20 126 chr3 98659204 98659402 -119377756 - L2 LINE L2 -90 3182 3006 194 356 15 84 chr3 98660836 98661229 -119375929 + L2 LINE L2 1438 1803 -1511 419 381 58 0 chr3 98661312 98661485 -119375673 + MIR SINE MIR 80 262 0 485 345 133 42 chr3 98661505 98662055 -119375103 + L2 LINE L2 1812 2411 -903 496 152 0 0 chr3 98662195 98662274 -119374884 + AluS SINE Alu 222 300 -12 441 144 100 0 chr3 98662284 98662374 -119374784 + L1MB4 LINE L1 6082 6180 0 2158 105 0 20 chr3 98662586 98662890 -119374268 - AluSq SINE Alu -15 298 1 1000 169 11 33 chr3 98662890 98663074 -119374084 - AluJb SINE Alu -13 299 120 1473 128 4 0 chr3 98663085 98663320 -119373838 - L1MA2 LINE L1 0 6304 6069 939 80 22 0 chr3 98663326 98663464 -119373694 - L1MA1 LINE L1 -86 6216 6076 717 121 14 100 chr3 98663464 98663566 -119373592 - AluJb SINE Alu -182 130 42 2063 135 3 7 chr3 98663566 98663870 -119373288 + AluSg1 SINE Alu 1 303 -6 717 121 14 100 chr3 98663870 98663907 -119373251 - AluJb SINE Alu -270 42 3 25 0 0 0 chr3 98663930 98663955 -119373203 + AT_rich Low_complexity Low_complexity 1 25 0 220 277 0 0 chr3 98664005 98664052 -119373106 + MIR SINE MIR 81 127 -135 3216 260 76 35 chr3 98664052 98665411 -119371747 - HsTC2 DNA Tc2 -226 1672 76 195 343 62 47 chr3 98666308 98666582 -119370576 + L2 LINE L2 1754 2031 -1283 218 329 0 13 chr3 98667564 98667640 -119369518 - MIR SINE MIR -74 188 114 277 165 110 99 chr3 98668936 98669027 -119368131 - MIR3 SINE MIR -35 173 82 276 294 119 28 chr3 98669322 98669465 -119367693 - L3b LINE CR1 -16 1567 1412 306 351 0 46 chr3 98670458 98670609 -119366549 + MIR3 SINE MIR 51 194 -14 200 163 23 0 chr3 98670615 98670658 -119366500 + (TGAA)n Simple_repeat Simple_repeat 4 47 0 864 164 40 13 chr3 98670820 98670972 -119366186 - AluSg/x SINE Alu -15 295 140 1974 114 0 24 chr3 98671116 98671438 -119365720 + AluSx SINE Alu 1 315 0 1146 181 4 105 chr3 98671582 98671848 -119365310 + AluJo SINE Alu 1 239 -73 23 0 0 0 chr3 98671889 98671912 -119365246 + AT_rich Low_complexity Low_complexity 1 23 0 1654 213 64 50 chr3 98672299 98672797 -119364361 + MLT1D LTR MaLR 1 505 0 2391 102 28 25 chr3 98673066 98673429 -119363729 - THE1B LTR MaLR 0 364 1 22 0 0 0 chr3 98674054 98674076 -119363082 + AT_rich Low_complexity Low_complexity 1 22 0 207 310 0 0 chr3 98674293 98674351 -119362807 + L2 LINE L2 3256 3313 0 1604 217 37 17 chr3 98675477 98675639 -119361519 + MLT1A1 LTR MaLR 4 161 -204 2461 108 31 0 chr3 98675639 98675992 -119361166 + THE1B LTR MaLR 1 364 0 1604 217 37 17 chr3 98675992 98676184 -119360974 + MLT1A1 LTR MaLR 161 365 0 2324 69 0 0 chr3 98676903 98677207 -119359951 - L1PA8 LINE L1 -2 6170 5867 1577 159 15 109 chr3 98677426 98677829 -119359329 + MLT1A1 LTR MaLR 1 365 0 307 217 33 0 chr3 98677830 98677890 -119359268 - MIR SINE MIR -30 232 171 303 71 429 0 chr3 98677892 98677948 -119359210 - MADE1 DNA Mariner 0 80 1 384 331 31 12 chr3 98677950 98678110 -119359048 - MIR SINE MIR -94 168 6 333 0 0 0 chr3 98679405 98679442 -119357716 + (TG)n Simple_repeat Simple_repeat 2 38 0 213 132 0 0 chr3 98679740 98679778 -119357380 + (CAA)n Simple_repeat Simple_repeat 2 39 0 192 77 0 0 chr3 98680292 98680318 -119356840 + (CCGGG)n Simple_repeat Simple_repeat 3 28 0 348 279 150 0 chr3 98683091 98683238 -119353920 - MIR SINE MIR -35 227 59 824 338 71 29 chr3 98683451 98684113 -119353045 + L2 LINE L2 1709 2398 -916 223 174 0 0 chr3 98687088 98687134 -119350024 + T-rich Low_complexity Low_complexity 1 46 0 1643 268 125 59 chr3 98688531 98689225 -119347933 - MER21B LTR ERV1 -122 741 2 1912 104 43 36 chr3 98689388 98689688 -119347470 + AluSq SINE Alu 3 304 0 1506 195 91 19 chr3 98690017 98690381 -119346777 + MLT1B LTR MaLR 1 390 0 362 309 0 24 chr3 98690485 98690608 -119346550 - MER103 DNA DNA -43 123 4 951 110 32 26 chr3 98691031 98691186 -119345972 - L1MB5 LINE L1 -7 6167 6012 3634 203 52 7 chr3 98691186 98692339 -119344819 - L1MB5 LINE L1 -78 6096 4886 457 326 0 22 chr3 98692380 98692518 -119344640 + MIR SINE MIR 7 141 -121 304 313 43 26 chr3 98692635 98692750 -119344408 - MIR SINE MIR -110 152 36 34 79 0 0 chr3 98693016 98693092 -119344066 + AT_rich Low_complexity Low_complexity 1 76 0 2039 93 47 27 chr3 98693113 98693413 -119343745 - AluSp SINE Alu -7 306 1 3128 232 46 32 chr3 98694133 98695168 -119341990 - L1ME1 LINE L1 -3 6163 5118 307 239 11 0 chr3 98695182 98695270 -119341888 - L1ME1 LINE L1 -3483 2663 2575 1713 214 71 82 chr3 98695356 98696015 -119341143 - L1MEc LINE L1 -1036 5179 4528 648 284 72 0 chr3 98696005 98696227 -119340931 - L1MEc LINE L1 -2231 3984 3747 * 282 139 0 0 chr3 98696230 98696300 -119340858 - AluSp/q SINE Alu 0 311 242 3266 222 58 76 chr3 98696300 98696880 -119340278 - L1MEc LINE L1 -2469 3746 3157 2324 78 3 0 chr3 98696880 98697175 -119339983 - AluSc SINE Alu -2 307 12 3266 222 58 76 chr3 98697175 98698267 -119338891 - L1MEc LINE L1 -3058 3157 2149 2240 117 3 0 chr3 98698972 98699280 -119337878 - AluSx SINE Alu -3 309 1 2679 240 45 8 chr3 98699939 98700556 -119336602 + MER82 DNA MER2_type 14 653 0 496 157 35 0 chr3 98700598 98700768 -119336390 + L1MA4A LINE L1 6037 6273 -30 37 62 0 0 chr3 98701086 98701151 -119336007 + AT_rich Low_complexity Low_complexity 1 65 0 285 275 66 47 chr3 98702140 98702559 -119334599 - L1ME4a LINE L1 -195 5926 5465 22 35 0 0 chr3 98706351 98706380 -119330778 + AT_rich Low_complexity Low_complexity 1 29 0 1432 112 108 12 chr3 98708999 98709257 -119327901 - THE1C LTR MaLR -92 283 1 1556 162 41 7 chr3 98709280 98709587 -119327571 + AluJo SINE Alu 3 318 0 282 317 50 0 chr3 98710696 98710816 -119326342 - L2 LINE L2 0 3313 3188 1789 88 29 0 chr3 98712469 98712756 -119324402 - AluSx SINE Alu 0 332 39 563 237 23 23 chr3 98714776 98714949 -119322209 + L1MC4a LINE L1 5318 5490 -2318 184 298 24 113 chr3 98714953 98715077 -119322081 - L2 LINE L2 -5 3308 3196 834 305 69 0 chr3 98715082 98715387 -119321771 + L1MC4a LINE L1 5501 5826 -1982 21 0 0 0 chr3 98715667 98715688 -119321470 + AT_rich Low_complexity Low_complexity 1 21 0 1259 112 51 0 chr3 98717286 98717483 -119319675 - MER2 DNA MER2_type -138 207 1 39 60 0 0 chr3 98717495 98717562 -119319596 + AT_rich Low_complexity Low_complexity 1 67 0 24 0 0 0 chr3 98717763 98717787 -119319371 + AT_rich Low_complexity Low_complexity 1 24 0 239 119 12 36 chr3 98717811 98717895 -119319263 + (TTTAA)n Simple_repeat Simple_repeat 5 86 0 309 252 9 0 chr3 98717899 98718010 -119319148 + (TA)n Simple_repeat Simple_repeat 1 112 0 22 35 0 0 chr3 98718650 98718679 -119318479 + AT_rich Low_complexity Low_complexity 1 29 0 250 255 45 60 chr3 98718812 98718977 -119318181 - MIR SINE MIR -56 206 45 21 36 0 0 chr3 98719123 98719151 -119318007 + AT_rich Low_complexity Low_complexity 1 28 0 1343 229 14 7 chr3 98719195 98719492 -119317666 - AluJo SINE Alu -13 299 1 1820 106 31 87 chr3 98719670 98719991 -119317167 - AluSq SINE Alu -8 305 3 726 229 100 0 chr3 98720805 98720975 -119316183 + MER58A DNA MER1_type 37 223 -1 207 0 0 0 chr3 98721365 98721388 -119315770 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 210 330 152 9 chr3 98721870 98721982 -119315176 - MIR3 SINE MIR -70 138 11 227 103 26 0 chr3 98723770 98723809 -119313349 + (CA)n Simple_repeat Simple_repeat 1 40 0 1122 63 0 0 chr3 98723891 98724033 -119313125 - L1PA3 LINE L1 0 6155 6014 886 171 0 50 chr3 98724436 98724617 -119312541 + MER3 DNA MER1_type 27 198 -11 35 78 0 0 chr3 98726094 98726171 -119310987 + AT_rich Low_complexity Low_complexity 1 77 0 25 31 0 0 chr3 98726396 98726428 -119310730 + AT_rich Low_complexity Low_complexity 1 32 0 286 121 276 0 chr3 98728764 98728822 -119308336 + MADE1 DNA Mariner 2 75 -5 287 313 45 9 chr3 98728886 98728998 -119308160 - MIR SINE MIR -8 254 139 230 271 47 12 chr3 98730049 98730134 -119307024 - L1ME LINE L1 -465 5656 5569 1971 125 14 7 chr3 98730475 98730771 -119306387 - AluSx SINE Alu -14 298 1 21 0 0 0 chr3 98731053 98731074 -119306084 + AT_rich Low_complexity Low_complexity 1 21 0 3635 74 2 2 chr3 98731762 98732249 -119304909 + L1PA7 LINE L1 5665 6151 -3 2291 78 10 3 chr3 98732250 98732556 -119304602 + AluSx SINE Alu 1 308 -4 423 326 216 18 chr3 98732710 98732928 -119304230 + MIR SINE MIR 2 262 0 383 244 221 0 chr3 98732967 98733094 -119304064 - MIR SINE MIR -47 215 61 228 67 0 0 chr3 98733501 98733531 -119303627 + (CA)n Simple_repeat Simple_repeat 1 30 0 306 235 0 0 chr3 98735917 98735998 -119301160 + (TATG)n Simple_repeat Simple_repeat 4 84 0 23 54 0 0 chr3 98737673 98737710 -119299448 + AT_rich Low_complexity Low_complexity 1 37 0 793 223 61 39 chr3 98738029 98738286 -119298872 - MLT1A2 LTR MaLR -137 253 1 453 81 0 0 chr3 98738531 98738593 -119298565 + (TA)n Simple_repeat Simple_repeat 1 62 0 303 402 0 33 chr3 98738905 98739089 -119298069 + L1MEd LINE L1 242 419 -5700 667 292 59 45 chr3 98739271 98739894 -119297264 + L1MEd LINE L1 623 1254 -4865 * 5775 147 40 24 chr3 98739892 98740594 -119296564 + L1MA4A LINE L1 4657 5347 -956 2331 113 8 6 chr3 98740594 98740948 -119296210 + THE1A LTR MaLR 1 355 0 5775 147 40 24 chr3 98740948 98741616 -119295542 + L1MA4A LINE L1 5347 6048 -255 1790 138 42 7 chr3 98741616 98741899 -119295259 - AluSq SINE Alu -20 293 1 5775 147 40 24 chr3 98741899 98742159 -119294999 + L1MA4A LINE L1 6048 6303 0 1863 150 0 3 chr3 98742165 98742481 -119294677 + AluSx SINE Alu 1 315 0 276 206 32 32 chr3 98742635 98742698 -119294460 - L2 LINE L2 -31 3282 3220 320 264 78 103 chr3 98742718 98743253 -119293905 + L1ME4a LINE L1 5378 5899 -222 218 91 23 45 chr3 98743487 98743531 -119293627 + (CAAAA)n Simple_repeat Simple_repeat 1 43 0 283 242 15 0 chr3 98744521 98744587 -119292571 - L3 LINE CR1 -1 1576 1510 338 219 0 0 chr3 98746425 98746498 -119290660 - L1PB1 LINE L1 -895 5251 5179 * 3808 85 5 4 chr3 98746496 98747053 -119290105 + L1PB1 LINE L1 5234 5791 -360 198 0 0 0 chr3 98747053 98747075 -119290083 + (TA)n Simple_repeat Simple_repeat 1 22 0 211 0 28 56 chr3 98747081 98747117 -119290041 + (CATAT)n Simple_repeat Simple_repeat 1 35 0 2189 146 3 8 chr3 98747128 98747497 -119289661 + L1PB1 LINE L1 5783 6149 -2 1976 160 90 5 chr3 98747503 98747871 -119289287 - MSTB LTR MaLR -27 399 1 21 0 0 0 chr3 98749241 98749262 -119287896 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr3 98750104 98750141 -119287017 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr3 98750784 98750809 -119286349 + AT_rich Low_complexity Low_complexity 1 25 0 741 234 48 21 chr3 98751218 98751406 -119285752 + MER58A DNA MER1_type 28 220 -4 2412 40 0 20 chr3 98751409 98751713 -119285445 - AluY SINE Alu -13 298 1 34 24 0 0 chr3 98752281 98752322 -119284836 + AT_rich Low_complexity Low_complexity 1 41 0 499 267 226 24 chr3 98754245 98754703 -119282455 + MLT1H1 LTR MaLR 3 519 -36 3314 65 8 29 chr3 98755730 98756206 -119280952 + L1PA8 LINE L1 5705 6170 -2 279 361 46 0 chr3 98756327 98756457 -119280701 - L2 LINE L2 -540 2774 2639 672 237 105 43 chr3 98756514 98756771 -119280387 + L2 LINE L2 2952 3224 -89 500 255 122 11 chr3 98756812 98756976 -119280182 + MER5A DNA MER1_type 4 188 -1 3322 68 9 0 chr3 98757002 98757441 -119279717 - L1PA7 LINE L1 -3 6151 5709 200 331 68 97 chr3 98757540 98757788 -119279370 - L2 LINE L2 -838 2476 2236 24 32 0 0 chr3 98758724 98758755 -119278403 + AT_rich Low_complexity Low_complexity 1 31 0 377 289 38 25 chr3 98759495 98759654 -119277504 - LTR16C LTR ERVL -15 476 316 1882 297 130 5 chr3 98759932 98760770 -119276388 + L2 LINE L2 577 1519 -1795 1706 216 122 32 chr3 98760832 98761616 -119275542 - MER69 DNA AcHobo -9 2517 1663 2120 267 72 27 chr3 98761641 98762148 -119275010 - MER69 DNA AcHobo -526 700 154 3647 121 15 36 chr3 98762148 98762531 -119274627 + LTR43 LTR ERV1 1 368 -234 2192 126 3 0 chr3 98762531 98762840 -119274318 + AluSg SINE Alu 1 310 0 3647 121 15 36 chr3 98762840 98763069 -119274089 + LTR43 LTR ERV1 368 600 -2 2120 267 72 27 chr3 98763069 98763228 -119273930 - MER69 DNA AcHobo -1072 154 4 438 302 83 57 chr3 98763258 98763523 -119273635 + L2 LINE L2 1632 1903 -1411 1047 274 212 10 chr3 98763547 98764118 -119273040 + L2 LINE L2 2369 3057 -256 51 17 0 0 chr3 98764118 98764176 -119272982 + AT_rich Low_complexity Low_complexity 1 58 0 265 194 115 136 chr3 98764232 98764423 -119272735 + L2 LINE L2 3126 3312 -1 2120 143 0 0 chr3 98764524 98764825 -119272333 - AluSx SINE Alu -11 301 1 3324 123 40 19 chr3 98765508 98766107 -119271051 - MER4B LTR ERV1 0 779 1 333 324 101 7 chr3 98766123 98766271 -119270887 + MER5B DNA MER1_type 17 178 0 833 225 60 10 chr3 98766498 98766698 -119270460 + MER63A DNA MER1_type 1 210 0 204 368 0 0 chr3 98766737 98766813 -119270345 - MIR SINE MIR -58 150 75 38 22 0 0 chr3 98767152 98767197 -119269961 + AT_rich Low_complexity Low_complexity 1 45 0 238 159 58 14 chr3 98767405 98767474 -119269684 + (CATATA)n Simple_repeat Simple_repeat 6 77 0 1843 199 33 44 chr3 98767479 98767931 -119269227 - MER82 DNA MER2_type -6 647 201 1091 181 10 15 chr3 98768223 98768427 -119268731 - MER82 DNA MER2_type -449 204 2 2288 102 0 0 chr3 98769245 98769540 -119267618 - AluSc SINE Alu -14 295 1 329 350 42 14 chr3 98769563 98769706 -119267452 - HAL1b LINE L1 -825 523 377 32 43 0 0 chr3 98770124 98770170 -119266988 + AT_rich Low_complexity Low_complexity 1 46 0 563 207 63 0 chr3 98771316 98771427 -119265731 + MER63 DNA MER1_type 1 744 -318 181 369 181 0 chr3 98771504 98771653 -119265505 + MIR SINE MIR 33 208 -54 726 265 81 70 chr3 98771727 98772097 -119265061 - MLT1A2 LTR MaLR 0 374 1 253 196 0 0 chr3 98772364 98772420 -119264738 + HsTC2 DNA Tc2 1 56 -1842 226 203 43 0 chr3 98772855 98772924 -119264234 - LTR37A LTR ERV1 0 426 355 14298 167 23 21 chr3 98773087 98775563 -119261595 + L1MA3 LINE L1 17 2496 -5069 261 0 0 0 chr3 98777309 98777338 -119259820 + (CA)n Simple_repeat Simple_repeat 1 29 0 14009 169 17 23 chr3 98777338 98781608 -119255550 + L1MA3 LINE L1 2494 6735 -830 2988 130 21 19 chr3 98781722 98782252 -119254906 + L1MA3 LINE L1 7193 7723 -1 25 0 0 0 chr3 98783159 98783184 -119253974 + AT_rich Low_complexity Low_complexity 1 25 0 775 197 22 45 chr3 98784576 98784754 -119252404 - MLT1D LTR MaLR 0 505 332 1273 221 91 18 chr3 98785128 98785468 -119251690 + MLT1A1 LTR MaLR 1 365 0 2839 237 6 19 chr3 98786201 98786829 -119250329 + MER82 DNA MER2_type 21 640 -13 222 91 0 0 chr3 98788115 98788148 -119249010 + (CA)n Simple_repeat Simple_repeat 1 33 0 2415 130 8 3 chr3 98788242 98788604 -119248554 + THE1B LTR MaLR 1 364 0 1556 173 0 4 chr3 98789815 98790081 -119247077 + Tigger5 DNA MER2_type 2044 2308 -15 183 42 0 0 chr3 98790104 98790128 -119247030 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 496 69 0 14 chr3 98790129 98790201 -119246957 - HY1 scRNA scRNA -1 111 41 374 263 59 143 chr3 98790622 98790994 -119246164 - L2 LINE L2 -124 3189 2849 1027 287 30 24 chr3 98791316 98791650 -119245508 + MER93a LTR ERV1 67 402 0 268 225 150 100 chr3 98791854 98791974 -119245184 - L2 LINE L2 -481 2833 2708 230 275 14 0 chr3 98793502 98793571 -119243587 + Tigger4(Zombi) DNA MER2_type 2012 2081 -650 849 224 15 5 chr3 98793575 98793780 -119243378 + L1MB8 LINE L1 5857 6063 -115 2308 260 73 16 chr3 98793795 98795163 -119241995 + L1M3c LINE L1 5 1501 -4640 6138 165 31 37 chr3 98795165 98796390 -119240768 - Tigger7 DNA MER2_type -3 2484 1267 354 265 51 0 chr3 98796399 98796516 -119240642 - MER46C DNA MER2_type -208 130 8 241 200 20 0 chr3 98796670 98796720 -119240438 - MER3 DNA MER1_type -116 93 43 549 167 130 25 chr3 98797020 98797182 -119239976 - L1M4 LINE L1 -2108 4038 3860 5074 167 28 9 chr3 98797197 98798126 -119239032 - L1MC1 LINE L1 -1 6332 5386 472 254 212 23 chr3 98798128 98798435 -119238723 - L1M4 LINE L1 -2290 3856 3492 724 94 0 0 chr3 98798523 98798619 -119238539 - L1MC/D LINE L1 -714 5619 5524 6064 96 12 12 chr3 98798654 98798747 -119238411 + L1PA14 LINE L1 5267 5359 -802 2198 109 10 0 chr3 98798747 98799050 -119238108 + AluSx SINE Alu 1 306 -6 6064 96 12 12 chr3 98799050 98799849 -119237309 + L1PA14 LINE L1 5358 6159 -2 295 183 99 0 chr3 98800389 98800460 -119236698 + MLT1E2 LTR MaLR 541 618 -8 21 0 0 0 chr3 98801009 98801030 -119236128 + AT_rich Low_complexity Low_complexity 1 21 0 7368 33 6 1 chr3 98802004 98802978 -119234180 + L1PA4 LINE L1 5177 6154 -1 203 333 25 12 chr3 98803467 98803548 -119233610 - MIR3 SINE MIR -45 163 82 881 145 0 0 chr3 98804034 98804158 -119233000 + AluSq/x SINE Alu 2 125 -188 24286 39 0 0 chr3 98804260 98808038 -119229120 + L1PA4 LINE L1 2359 6155 0 11202 149 17 13 chr3 98808038 98810285 -119226873 + L1P4 LINE L1 3334 5583 -580 648 95 11 0 chr3 98810507 98810602 -119226556 - L1PA13 LINE L1 -13 6150 6055 307 248 50 21 chr3 98810738 98810879 -119226279 + MLT1H LTR MaLR 24 168 -381 247 176 93 102 chr3 98811045 98811153 -119226005 + MLT1G1 LTR MaLR 473 579 -16 844 269 86 58 chr3 98811172 98811729 -119225429 + L1ME2 LINE L1 4521 5093 -1053 1016 261 43 6 chr3 98811754 98812175 -119224983 + L1P LINE L1 4935 5374 -772 * 1736 236 63 48 chr3 98812162 98812815 -119224343 + L1ME2 LINE L1 5333 5995 -169 180 0 0 0 chr3 98812853 98812873 -119224285 + (TA)n Simple_repeat Simple_repeat 2 21 0 2349 86 0 3 chr3 98812873 98813164 -119223994 - AluSx SINE Alu -21 291 2 189 171 0 0 chr3 98813846 98813881 -119223277 + (CA)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr3 98813908 98813930 -119223228 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 98815261 98815282 -119221876 + AT_rich Low_complexity Low_complexity 1 21 0 276 136 0 0 chr3 98815581 98815625 -119221533 - Tigger5 DNA MER2_type -190 2133 2090 * 1303 231 0 0 chr3 98815620 98815858 -119221300 - Tigger5 DNA MER2_type -2085 238 1 2626 216 43 24 chr3 98816004 98816717 -119220441 + L1P LINE L1 4675 5401 -745 347 338 50 42 chr3 98816733 98816973 -119220185 + L2 LINE L2 1942 2183 -1131 1680 198 31 49 chr3 98816982 98817371 -119219787 + MLT1B LTR MaLR 3 384 -6 731 258 6 6 chr3 98817387 98817550 -119219608 - MER5A DNA MER1_type -26 163 1 225 149 21 21 chr3 98817550 98817589 -119219569 + L2 LINE L2 2177 2215 -1099 1779 236 77 5 chr3 98817591 98818018 -119219140 + MLT2B1 LTR ERVL 1 458 -62 218 203 51 0 chr3 98818040 98818099 -119219059 + (CAGAGA)n Simple_repeat Simple_repeat 5 66 0 350 147 52 9 chr3 98818108 98818224 -119218934 + (TA)n Simple_repeat Simple_repeat 1 121 0 306 191 0 0 chr3 98818236 98818304 -119218854 + MLT2B1 LTR ERVL 451 518 -2 1421 317 77 25 chr3 98818368 98819225 -119217933 + L2 LINE L2 2241 3308 -5 738 308 39 13 chr3 98819303 98819537 -119217621 + MIR SINE MIR 2 241 -21 819 154 35 102 chr3 98819977 98820107 -119217051 - MLT1L-int LTR MaLR -1036 335 198 2128 134 0 6 chr3 98820107 98820421 -119216737 + AluSx SINE Alu 1 312 0 819 154 35 102 chr3 98820421 98820524 -119216634 - MLT1L-int LTR MaLR -1173 198 2 1752 227 12 10 chr3 98820527 98820937 -119216221 - MLT2D LTR ERVL -2 412 2 252 271 0 93 chr3 98821062 98821169 -119215989 + MER5B DNA MER1_type 81 177 -1 282 73 0 0 chr3 98822590 98822631 -119214527 + (TG)n Simple_repeat Simple_repeat 2 42 0 1145 286 62 31 chr3 98824747 98825166 -119211992 - LTR16A LTR ERVL -3 447 16 303 263 20 10 chr3 98825331 98825430 -119211728 - MLT1L LTR MaLR -10 605 506 2151 119 0 13 chr3 98825679 98825989 -119211169 - AluSg SINE Alu 0 310 5 2025 131 121 23 chr3 98826625 98827013 -119210145 - MSTA LTR MaLR 0 428 3 1031 138 6 35 chr3 98827374 98827548 -119209610 + AluSg/x SINE Alu 144 312 0 180 0 0 0 chr3 98827750 98827770 -119209388 + (T)n Simple_repeat Simple_repeat 1 20 0 41455 40 27 2 chr3 98828355 98834335 -119202823 - L1PA3 LINE L1 -4 6151 13 2115 109 11 0 chr3 98834525 98834810 -119202348 + AluSc SINE Alu 1 288 -21 186 189 0 0 chr3 98834878 98834915 -119202243 + (TATG)n Simple_repeat Simple_repeat 3 39 0 208 360 81 22 chr3 98837038 98837174 -119199984 - L2 LINE L2 -33 3239 3096 33 0 0 0 chr3 98837362 98837395 -119199763 + AT_rich Low_complexity Low_complexity 1 33 0 47 19 0 0 chr3 98837960 98838014 -119199144 + AT_rich Low_complexity Low_complexity 1 54 0 27 0 0 0 chr3 98838064 98838091 -119199067 + AT_rich Low_complexity Low_complexity 1 27 0 456 286 141 0 chr3 98838753 98838980 -119198178 + MER46C DNA MER2_type 79 337 -1 181 314 0 20 chr3 98839737 98839788 -119197370 + MIR SINE MIR 16 65 -143 713 231 171 5 chr3 98840234 98840450 -119196708 + MIR SINE MIR 6 257 -5 468 257 98 45 chr3 98840475 98840720 -119196438 + MIR SINE MIR 5 262 0 299 329 92 0 chr3 98840855 98841007 -119196151 - L2 LINE L2 -968 2346 2181 289 345 115 40 chr3 98841553 98842022 -119195136 - L2 LINE L2 0 3313 2810 1146 205 31 27 chr3 98842470 98842728 -119194430 - MLT1A2 LTR MaLR -111 263 5 284 311 47 0 chr3 98842755 98842861 -119194297 - L2 LINE L2 -968 2346 2236 329 327 124 7 chr3 98842975 98843128 -119194030 - MIR SINE MIR -72 190 20 186 361 0 92 chr3 98843536 98843666 -119193492 + L2 LINE L2 3139 3256 -16 12788 210 37 8 chr3 98844375 98849384 -119187774 + L1PBa LINE L1 407 5810 -1052 22 0 0 0 chr3 98849536 98849558 -119187600 + AT_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chr3 98850329 98850353 -119186805 + (CA)n Simple_repeat Simple_repeat 2 25 0 1720 162 7 17 chr3 98850778 98851074 -119186084 + AluJo SINE Alu 1 293 -19 363 255 66 47 chr3 98851877 98852089 -119185069 - L1ME LINE L1 -346 5775 5560 2161 131 3 3 chr3 98853595 98853908 -119183250 - AluSq SINE Alu 0 313 1 1957 159 0 13 chr3 98854381 98854696 -119182462 - AluSx SINE Alu -1 311 1 6186 192 26 74 chr3 98854813 98856458 -119180700 + L1P LINE L1 1783 3349 -2797 2642 64 3 0 chr3 98856447 98856792 -119180366 - L1P LINE L1 -4455 1691 1346 * 4425 68 2 0 chr3 98856792 98857370 -119179788 + L1P LINE L1 1705 2283 -3863 200 59 29 0 chr3 98857472 98857506 -119179652 + (TA)n Simple_repeat Simple_repeat 2 36 0 189 171 0 0 chr3 98857564 98857599 -119179559 + GA-rich Low_complexity Low_complexity 1 35 0 393 130 0 0 chr3 98857903 98857957 -119179201 + AluS SINE Alu 227 280 -20 261 0 0 0 chr3 98857961 98857990 -119179168 + (CAA)n Simple_repeat Simple_repeat 3 31 0 428 14 58 0 chr3 98857990 98858059 -119179099 + (TA)n Simple_repeat Simple_repeat 1 73 0 2078 132 30 0 chr3 98858126 98858429 -119178729 + AluSx SINE Alu 1 312 0 1626 215 55 53 chr3 98858438 98858931 -119178227 + MLT1D LTR MaLR 7 500 -5 309 285 15 88 chr3 98859316 98859453 -119177705 + L2 LINE L2 3141 3267 -5 183 279 49 49 chr3 98859830 98859891 -119177267 - MIR SINE MIR -193 69 9 2291 142 86 8 chr3 98859934 98860329 -119176829 + MSTB LTR MaLR 1 426 0 591 52 21 21 chr3 98861526 98861623 -119175535 + (TCTA)n Simple_repeat Simple_repeat 2 98 0 5946 253 58 62 chr3 98861970 98862797 -119174361 - HERVL LTR ERVL -447 5317 4488 241 128 0 26 chr3 98862797 98862836 -119174322 - U1 snRNA snRNA -121 44 7 5946 253 58 62 chr3 98862836 98863610 -119173548 - HERVL LTR ERVL -1276 4488 3685 2197 105 3 10 chr3 98863610 98863916 -119173242 + AluSg SINE Alu 1 304 -6 5946 253 58 62 chr3 98863916 98864235 -119172923 - HERVL LTR ERVL -2079 3685 3366 483 361 39 0 chr3 98864255 98864463 -119172695 + HERVL LTR ERVL 4727 4942 -712 2059 250 30 34 chr3 98864464 98865000 -119172158 + MLT1F1 LTR MaLR 33 566 -1 2271 298 49 16 chr3 98865085 98865838 -119171320 - L2 LINE L2 -491 2823 2046 258 300 77 65 chr3 98865837 98866007 -119171151 + L2 LINE L2 2592 2763 -551 * 21 36 0 0 chr3 98866382 98866410 -119170748 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 98866583 98866605 -119170553 + AT_rich Low_complexity Low_complexity 1 22 0 22 88 0 0 chr3 98868500 98868557 -119168601 + AT_rich Low_complexity Low_complexity 1 57 0 422 278 80 65 chr3 98868566 98868829 -119168329 - HAL1 LINE L1 0 2507 2241 523 317 115 44 chr3 98868852 98869888 -119167270 - HAL1 LINE L1 -404 2103 995 251 243 14 40 chr3 98870008 98870082 -119167076 - L2 LINE L2 0 3313 3242 333 308 79 84 chr3 98870185 98870461 -119166697 + L1ME LINE L1 37 312 -5758 1672 162 0 42 chr3 98870461 98870770 -119166388 + AluJb SINE Alu 1 296 -16 333 308 79 84 chr3 98870770 98870922 -119166236 + L1ME LINE L1 312 463 -5607 366 290 66 48 chr3 98871129 98871396 -119165762 + L1ME LINE L1 511 751 -5319 698 288 62 41 chr3 98871396 98871736 -119165422 - LTR16B LTR ERVL 0 464 118 333 389 65 15 chr3 98871904 98872228 -119164930 - HERVL LTR ERVL -727 4927 4588 4082 160 38 52 chr3 98872249 98873562 -119163596 + LTR12 LTR ERV1 5 691 -23 751 331 117 10 chr3 98873574 98873967 -119163191 - HERVL LTR ERVL -927 4558 4124 274 174 102 71 chr3 98874200 98874298 -119162860 - HERVL LTR ERVL -1658 3827 3727 233 415 0 0 chr3 98874429 98874535 -119162623 - LTR16B LTR ERVL -332 132 27 1898 288 69 23 chr3 98874571 98875390 -119161768 + L1MCa LINE L1 936 2028 -4579 1948 125 44 3 chr3 98875390 98875687 -119161471 + AluSq SINE Alu 1 309 -4 1898 288 69 23 chr3 98875687 98876092 -119161066 + L1MCa LINE L1 2028 2413 -4194 540 287 34 4 chr3 98876125 98876362 -119160796 + L1MCa LINE L1 2506 2749 -3677 305 250 67 29 chr3 98876599 98876703 -119160455 + MER46C DNA MER2_type 1 108 -230 1475 98 56 0 chr3 98876803 98877018 -119160140 + MER30 DNA MER1_type 4 230 0 5278 230 24 7 chr3 98927238 98927401 -119109757 + L1P LINE L1 3170 3329 -2817 216 0 0 0 chr3 98927401 98927425 -119109733 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5278 230 24 7 chr3 98927425 98928596 -119108562 + L1P LINE L1 3329 4527 -1619 3215 139 63 6 chr3 98928698 98929352 -119107806 + L1MC1 LINE L1 5130 5826 -507 5412 49 4 0 chr3 98929353 98930049 -119107109 + L1P LINE L1 1 699 -5447 404 208 42 21 chr3 98930746 98930842 -119106316 + L2 LINE L2 3216 3313 0 196 268 0 0 chr3 98931470 98931511 -119105647 - MIR3 SINE MIR -10 198 158 197 225 69 6 chr3 98932306 98932397 -119104761 - MIR SINE MIR -53 209 102 198 0 0 0 chr3 98932569 98932591 -119104567 + (T)n Simple_repeat Simple_repeat 1 22 0 548 189 31 135 chr3 98932726 98932823 -119104335 - MER63 DNA MER1_type -13 1049 986 1862 146 3 13 chr3 98932823 98933125 -119104033 + AluSx SINE Alu 1 299 -13 548 189 31 135 chr3 98933125 98933249 -119103909 - MER63 DNA MER1_type -76 986 851 206 259 19 0 chr3 98933353 98933407 -119103751 - L2 LINE L2 -2 3311 3257 342 284 74 0 chr3 98933746 98933841 -119103317 + MER5A DNA MER1_type 4 105 -84 29 28 0 0 chr3 98934284 98934320 -119102838 + AT_rich Low_complexity Low_complexity 1 36 0 261 75 0 0 chr3 98934611 98934651 -119102507 + (A)n Simple_repeat Simple_repeat 1 40 0 27 0 0 0 chr3 98936644 98936671 -119100487 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr3 98937087 98937115 -119100043 + AT_rich Low_complexity Low_complexity 1 28 0 429 392 99 21 chr3 98937650 98938514 -119098644 + L2 LINE L2 1750 2681 -633 1299 161 0 23 chr3 98939198 98939458 -119097700 - L1MA5 LINE L1 -5 6295 6042 772 311 107 28 chr3 98941278 98941744 -119095414 - MLT1J LTR MaLR 0 511 9 201 39 0 0 chr3 98941857 98941883 -119095275 + (CAA)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr3 98942185 98942206 -119094952 + AT_rich Low_complexity Low_complexity 1 21 0 1465 46 0 6 chr3 98943383 98943588 -119093570 + AluY SINE Alu 110 313 0 21 71 0 0 chr3 98943620 98943662 -119093496 + AT_rich Low_complexity Low_complexity 1 42 0 395 292 2 4 chr3 98943931 98944055 -119093103 - MLT1H LTR MaLR -383 166 1 21 0 0 0 chr3 98945681 98945702 -119091456 + AT_rich Low_complexity Low_complexity 1 21 0 23 92 0 0 chr3 98945869 98945934 -119091224 + AT_rich Low_complexity Low_complexity 1 65 0 28 71 0 0 chr3 98945983 98946039 -119091119 + AT_rich Low_complexity Low_complexity 1 56 0 313 242 107 50 chr3 98946178 98946476 -119090682 - L1M4 LINE L1 -2956 3190 2876 694 231 51 46 chr3 98946493 98946709 -119090449 + MIR SINE MIR 12 228 -34 387 73 0 0 chr3 98947354 98947409 -119089749 + (TG)n Simple_repeat Simple_repeat 1 55 0 216 0 0 0 chr3 98947900 98947924 -119089234 + (A)n Simple_repeat Simple_repeat 1 24 0 216 0 0 0 chr3 98948654 98948678 -119088480 + (A)n Simple_repeat Simple_repeat 1 24 0 29 0 0 0 chr3 98949986 98950015 -119087143 + AT_rich Low_complexity Low_complexity 1 29 0 5179 187 37 28 chr3 98950970 98952224 -119084934 + L1 LINE L1 2713 3977 -2169 259 254 42 14 chr3 98952770 98952841 -119084317 - L1ME1 LINE L1 -28 6138 6066 24 32 0 0 chr3 98953641 98953672 -119083486 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr3 98954095 98954120 -119083038 + AT_rich Low_complexity Low_complexity 1 25 0 831 145 227 137 chr3 98955214 98955615 -119081543 + LTR23 LTR ERV1 1 437 0 1869 132 29 16 chr3 98955889 98956230 -119080928 - MER4A LTR ERV1 0 664 261 660 109 0 30 chr3 98956230 98956331 -119080827 - MER4A LTR ERV1 -566 98 1 21 71 0 0 chr3 98956541 98956583 -119080575 + AT_rich Low_complexity Low_complexity 1 42 0 228 182 0 0 chr3 98956600 98956644 -119080514 + (TA)n Simple_repeat Simple_repeat 1 44 0 3301 83 12 30 chr3 98956673 98957168 -119079990 + LTR19A LTR ERV1 1 486 0 26 50 0 0 chr3 98957535 98957575 -119079583 + AT_rich Low_complexity Low_complexity 1 40 0 479 287 90 12 chr3 98957731 98957898 -119079260 + MER5A DNA MER1_type 1 180 -9 1675 152 41 0 chr3 98958151 98958420 -119078738 + AluSq SINE Alu 21 300 -13 309 356 98 28 chr3 98958729 98959055 -119078103 - L3 LINE CR1 -556 1021 673 2601 174 77 40 chr3 98959057 98959630 -119077528 + LTR8 LTR ERV1 1 594 -97 272 260 247 0 chr3 98959648 98959725 -119077433 + AluYb8 SINE Alu 136 191 -117 1007 119 31 83 chr3 98959779 98959972 -119077186 + LTR8A LTR ERV1 545 727 0 9851 193 62 72 chr3 98961361 98964149 -119073009 - L1M1 LINE L1 -4382 3183 17 265 358 8 22 chr3 98966348 98966482 -119070676 + MIR SINE MIR 83 214 -48 3516 165 28 0 chr3 98968208 98968826 -119068332 - L1PA16 LINE L1 -58 6108 5474 6852 188 35 26 chr3 98968838 98971818 -119065340 - L1PA10 LINE L1 -9 6159 3142 2267 116 0 0 chr3 98972660 98972970 -119064188 + AluSx SINE Alu 1 310 -2 25 0 0 0 chr3 98973850 98973875 -119063283 + AT_rich Low_complexity Low_complexity 1 25 0 1640 216 0 0 chr3 98974099 98974395 -119062763 + AluJo SINE Alu 3 298 -14 10124 225 32 29 chr3 98975995 98977583 -119059575 + L1M1 LINE L1 23 1605 -5960 558 100 0 0 chr3 98977583 98977663 -119059495 + L1PA11 LINE L1 6092 6171 -3 10124 225 32 29 chr3 98977663 98980307 -119056851 + L1M1 LINE L1 1605 4982 -2583 9875 139 19 14 chr3 98980424 98982097 -119055061 + HERVH LTR ERV1 2314 3993 -3720 4642 127 10 1 chr3 98982103 98982794 -119054364 + HERVH LTR ERV1 4453 5149 -2564 2452 151 12 5 chr3 98982785 98983209 -119053949 + HERVH LTR ERV1 5590 6016 -1697 * 3525 110 16 13 chr3 98983202 98983757 -119053401 + HERVH LTR ERV1 7157 7713 0 2021 104 71 6 chr3 98983757 98984124 -119053034 + LTR7 LTR ERV1 1 450 0 570 209 0 0 chr3 98984126 98984236 -119052922 + MLT1B LTR MaLR 281 390 0 231 130 37 19 chr3 98984494 98984548 -119052610 + T-rich Low_complexity Low_complexity 3 57 0 376 285 32 57 chr3 98984783 98984862 -119052296 - MER5B DNA MER1_type 0 178 103 477 220 101 60 chr3 98984862 98985030 -119052128 - MER5B DNA MER1_type -3 175 1 376 285 32 57 chr3 98985030 98985108 -119052050 - MER5B DNA MER1_type -75 103 25 226 65 22 22 chr3 98986861 98986907 -119050251 + (TAAAAA)n Simple_repeat Simple_repeat 2 47 0 23 0 0 0 chr3 98987624 98987647 -119049511 + AT_rich Low_complexity Low_complexity 1 23 0 229 269 221 10 chr3 98987805 98987909 -119049249 - MIR3 SINE MIR -2 206 81 1881 138 3 7 chr3 98987956 98988238 -119048920 + AluJb SINE Alu 1 281 -31 385 162 52 0 chr3 98988239 98988393 -119048765 + (TA)n Simple_repeat Simple_repeat 2 163 0 213 228 114 25 chr3 98988650 98988729 -119048429 - MIR3 SINE MIR -112 96 11 398 304 78 61 chr3 98988831 98989243 -119047915 - MLT1J1 LTR MaLR 0 446 58 26 0 0 0 chr3 98990313 98990339 -119046819 + AT_rich Low_complexity Low_complexity 1 26 0 1782 152 48 24 chr3 98990640 98990975 -119046183 + MER61A LTR ERV1 1 343 0 450 279 9 0 chr3 98991387 98991498 -119045660 - MIR SINE MIR -69 193 82 353 121 35 0 chr3 98991947 98992005 -119045153 - MLT1E2 LTR MaLR -425 201 142 209 87 22 43 chr3 98992597 98992643 -119044515 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 1118 293 164 44 chr3 98992755 98993505 -119043653 + L2 LINE L2 2439 3278 -35 668 295 10 14 chr3 98993576 98993783 -119043375 - MIR SINE MIR 0 262 57 928 181 17 3 chr3 98994348 98994585 -119042573 - AluJb SINE Alu -4 308 1 6757 49 35 10 chr3 98995015 98996487 -119040671 + L1PA4 LINE L1 4661 6154 -1 2348 144 3 5 chr3 98996846 98997222 -119039936 - THE1C LTR MaLR 0 375 1 8106 175 69 64 chr3 98997222 98998774 -119038384 - THE1C-int LTR MaLR 0 1580 21 2600 115 5 3 chr3 98998793 98999167 -119037991 - THE1C LTR MaLR 0 375 1 1325 188 125 32 chr3 98999687 98999750 -119037408 + MLT1C LTR MaLR 1 57 -410 1953 168 21 0 chr3 98999750 99000089 -119037069 + MER7A DNA MER2_type 2 345 -1 1325 188 125 32 chr3 99000089 99000414 -119036744 + MLT1C LTR MaLR 57 467 0 329 240 82 48 chr3 99000621 99000767 -119036391 + L1MA3 LINE L1 3121 3271 -2875 1376 174 89 50 chr3 99001279 99001640 -119035518 - THE1C LTR MaLR 0 375 1 2285 205 52 14 chr3 99001640 99002138 -119035020 - MLT2B1 LTR ERVL -3 517 1 776 219 46 31 chr3 99003059 99003328 -119033830 + MER4C LTR ERV1 277 697 -2 2532 99 3 22 chr3 99003812 99004174 -119032984 - THE1A LTR MaLR 0 355 1 10912 108 13 3 chr3 99004174 99005737 -119031421 - THE1A-int LTR MaLR 0 1580 1 2018 127 7 26 chr3 99005737 99006044 -119031114 - THE1A LTR MaLR 0 355 55 7532 164 31 25 chr3 99006145 99006615 -119030543 + L1MA3 LINE L1 3803 4269 -2036 1695 24 10 19 chr3 99006615 99006824 -119030334 + AluY SINE Alu 96 302 -9 7532 164 31 25 chr3 99006824 99008833 -119028325 + L1MA3 LINE L1 4269 6305 0 1510 143 29 25 chr3 99008896 99009175 -119027983 + L1PA13 LINE L1 5882 6161 -2 27 0 9 0 chr3 99009200 99009272 -119027886 + AT_rich Low_complexity Low_complexity 1 27 0 228 253 99 22 chr3 99009538 99009629 -119027529 + L2 LINE L2 3168 3265 -7 197 298 83 36 chr3 99009998 99010082 -119027076 - MIR SINE MIR -23 239 152 299 215 128 0 chr3 99010982 99011084 -119026074 + MER61E LTR ERV1 1 85 -484 580 201 75 147 chr3 99011125 99011538 -119025620 + MER61D LTR ERV1 335 614 -10 208 173 0 19 chr3 99011668 99011720 -119025438 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1500 132 0 9 chr3 99013432 99013652 -119023506 + AluSg/x SINE Alu 76 293 -17 1759 151 46 35 chr3 99014462 99014833 -119022325 + THE1C LTR MaLR 1 375 0 9917 115 53 7 chr3 99014833 99016343 -119020815 + THE1C-int LTR MaLR 1 1580 0 1734 141 62 49 chr3 99016343 99016713 -119020445 + THE1C LTR MaLR 1 375 0 1679 203 78 45 chr3 99017089 99017576 -119019582 - MLT1D LTR MaLR 0 505 3 257 308 80 37 chr3 99017745 99018044 -119019114 + L1MCc LINE L1 1173 1484 -4939 363 268 42 14 chr3 99018190 99018332 -119018826 + L1MCc LINE L1 2364 2509 -4613 27 81 0 0 chr3 99018525 99018587 -119018571 + AT_rich Low_complexity Low_complexity 1 62 0 1775 172 7 0 chr3 99020052 99020342 -119016816 - AluSx SINE Alu -16 296 5 1695 160 191 8 chr3 99020635 99020997 -119016161 + MSTA LTR MaLR 1 428 0 180 221 0 35 chr3 99021114 99021200 -119015958 + (TA)n Simple_repeat Simple_repeat 1 83 0 7682 23 0 2 chr3 99022690 99024068 -119013090 + L1PA2 LINE L1 4780 6155 0 1258 196 24 20 chr3 99024953 99025208 -119011950 - AluJo SINE Alu -18 294 39 22 0 0 0 chr3 99026033 99026055 -119011103 + AT_rich Low_complexity Low_complexity 1 22 0 541 130 0 43 chr3 99026155 99026247 -119010911 + FRAM SINE Alu 65 152 -24 25 31 0 0 chr3 99026554 99026586 -119010572 + AT_rich Low_complexity Low_complexity 1 32 0 2216 24 0 0 chr3 99026717 99026970 -119010188 + MER11D LTR ERVK 1 253 -644 307 309 21 21 chr3 99027249 99027343 -119009815 - MIR SINE MIR -84 124 31 21 36 0 0 chr3 99027352 99027380 -119009778 + AT_rich Low_complexity Low_complexity 1 28 0 248 70 23 0 chr3 99027775 99027818 -119009340 + (TTTAA)n Simple_repeat Simple_repeat 2 45 0 2614 108 5 16 chr3 99027917 99028296 -119008862 - THE1C LTR MaLR 0 375 1 5658 184 35 14 chr3 99028568 99029885 -119007273 + L1MA8 LINE L1 4111 5399 -892 2067 119 7 99 chr3 99029885 99030112 -119007046 - THE1C LTR MaLR 0 375 201 1901 148 7 0 chr3 99030112 99030396 -119006762 + AluSx SINE Alu 3 288 -24 2067 119 7 99 chr3 99030396 99030580 -119006578 - THE1C LTR MaLR -174 201 2 9653 128 37 9 chr3 99030581 99032118 -119005040 - THE1C-int LTR MaLR 0 1580 1 2235 132 8 36 chr3 99032118 99032504 -119004654 - THE1C LTR MaLR 0 375 1 5658 184 35 14 chr3 99032504 99033318 -119003840 + L1MA8 LINE L1 5398 6289 -2 648 256 81 75 chr3 99034639 99034998 -119002160 + L1MC5 LINE L1 6689 7049 -912 700 167 8 8 chr3 99035642 99035768 -119001390 - MLT2B1 LTR ERVL -394 126 1 2660 93 0 3 chr3 99036177 99036533 -119000625 - THE1A LTR MaLR 0 355 1 11013 107 21 0 chr3 99036533 99038081 -118999077 - THE1A-int LTR MaLR 0 1580 1 2654 96 3 0 chr3 99038081 99038435 -118998723 - THE1A LTR MaLR 0 355 1 30 45 0 0 chr3 99038934 99038978 -118998180 + AT_rich Low_complexity Low_complexity 1 44 0 1325 230 82 14 chr3 99039533 99039956 -118997202 + MLT1C LTR MaLR 3 618 -8 1080 253 68 30 chr3 99040058 99040453 -118996705 - MER20B DNA MER1_type -31 752 343 22 0 0 0 chr3 99041650 99041672 -118995486 + AT_rich Low_complexity Low_complexity 1 22 0 317 319 62 11 chr3 99041863 99042073 -118995085 - MIR SINE MIR 0 262 2 202 362 43 0 chr3 99042094 99042163 -118994995 + MIR SINE MIR 16 87 -121 24 0 0 0 chr3 99043860 99043884 -118993274 + AT_rich Low_complexity Low_complexity 1 24 0 1740 164 14 0 chr3 99044283 99044575 -118992583 - AluJo SINE Alu -16 296 1 201 39 0 0 chr3 99044694 99044720 -118992438 + (TC)n Simple_repeat Simple_repeat 1 26 0 27 29 0 0 chr3 99044785 99044819 -118992339 + AT_rich Low_complexity Low_complexity 1 34 0 2479 58 0 3 chr3 99046691 99047003 -118990155 + AluY SINE Alu 1 311 0 3352 108 70 4 chr3 99047186 99047730 -118989428 + LTR19B LTR ERV1 1 580 0 1088 178 0 0 chr3 99048113 99048287 -118988871 - AluJb SINE Alu -3 309 136 25 0 0 0 chr3 99048300 99048325 -118988833 + AT_rich Low_complexity Low_complexity 1 25 0 2467 214 39 7 chr3 99048331 99048925 -118988233 - L1MB7 LINE L1 -10 6174 5562 467 167 157 0 chr3 99048930 99049032 -118988126 - AluJb SINE Alu -194 118 1 898 138 102 0 chr3 99049762 99049958 -118987200 - L1MA8 LINE L1 -2 6289 6074 22 35 0 0 chr3 99050364 99050393 -118986765 + AT_rich Low_complexity Low_complexity 1 29 0 3551 19 9 0 chr3 99051997 99052418 -118984740 + L1PA3 LINE L1 5730 6154 -1 180 125 0 0 chr3 99052424 99052456 -118984702 + (A)n Simple_repeat Simple_repeat 1 32 0 219 69 0 0 chr3 99053901 99053930 -118983228 + (TA)n Simple_repeat Simple_repeat 2 30 0 352 299 86 0 chr3 99054125 99054242 -118982916 + MER91C DNA MER1_type 1 127 -13 1938 100 92 0 chr3 99054781 99055062 -118982096 - AluY SINE Alu -4 307 1 25 0 0 0 chr3 99056592 99056617 -118980541 + AT_rich Low_complexity Low_complexity 1 25 0 497 273 81 48 chr3 99056740 99056949 -118980209 + LTR67 LTR ERVL 328 543 -14 1388 170 55 82 chr3 99058939 99059220 -118977938 - MLT1B LTR MaLR 0 390 122 2278 100 7 0 chr3 99059220 99059529 -118977629 - AluSp SINE Alu -2 311 1 1388 170 55 82 chr3 99059529 99059648 -118977510 - MLT1B LTR MaLR -268 122 1 226 262 41 98 chr3 99060339 99060461 -118976697 + L1 LINE L1 2696 2810 -3336 6234 155 67 5 chr3 99060614 99061687 -118975471 + Tigger2 DNA MER2_type 1579 2718 0 1041 217 67 15 chr3 99061705 99062167 -118974991 - L1MB7 LINE L1 -743 5403 4975 546 203 27 19 chr3 99062284 99062700 -118974458 + CT-rich Low_complexity Low_complexity 1 419 0 2553 266 49 13 chr3 99062700 99063575 -118973583 - L1MB7 LINE L1 -1194 4952 4046 1462 40 6 0 chr3 99064155 99064330 -118972828 + AluY SINE Alu 1 176 -135 2012 91 82 6 chr3 99064432 99064476 -118972682 - MER4E LTR ERV1 -423 343 304 477 0 0 0 chr3 99064476 99064529 -118972629 + (GGAA)n Simple_repeat Simple_repeat 1 53 0 2012 91 82 6 chr3 99064529 99064803 -118972355 - MER4E LTR ERV1 -462 304 1 32 43 0 0 chr3 99064932 99064978 -118972180 + AT_rich Low_complexity Low_complexity 1 46 0 240 219 47 0 chr3 99065334 99065398 -118971760 + GA-rich Low_complexity Low_complexity 1 67 0 520 285 115 52 chr3 99065882 99066517 -118970641 - L1M4 LINE L1 -1979 4167 3493 1727 207 12 48 chr3 99066547 99066963 -118970195 - MER21B LTR ERV1 -20 843 443 3693 187 6 9 chr3 99066988 99067640 -118969518 - LTR51 LTR ERV1 0 671 22 2247 193 20 18 chr3 99067640 99068080 -118969078 - MER21B LTR ERV1 -422 441 1 746 254 11 11 chr3 99068201 99068390 -118968768 - MER58C DNA MER1_type 0 215 27 1885 252 51 2 chr3 99068534 99069161 -118967997 + L1MEc LINE L1 2198 2829 -3386 24 32 0 0 chr3 99070679 99070710 -118966448 + AT_rich Low_complexity Low_complexity 1 31 0 774 341 69 9 chr3 99071376 99071925 -118965233 + L1MC4a LINE L1 5351 5932 -1876 2508 153 70 7 chr3 99071932 99072363 -118964795 - LTR24 LTR ERV1 0 467 10 23 0 0 0 chr3 99072725 99072748 -118964410 + AT_rich Low_complexity Low_complexity 1 23 0 236 122 73 0 chr3 99073436 99073477 -118963681 - LTR49 LTR ERV1 0 595 552 * 398 107 2 9 chr3 99073468 99073533 -118963625 - LTR49 LTR ERV1 -321 274 219 5159 118 25 44 chr3 99073617 99074595 -118962563 - L1PA15 LINE L1 -3 6162 5204 1843 111 4 29 chr3 99074596 99074876 -118962282 - LTR49 LTR ERV1 -322 273 1 444 304 39 48 chr3 99075880 99076192 -118960966 + L1ME3 LINE L1 4804 5112 -1034 733 132 0 0 chr3 99076214 99076328 -118960830 + MER57A LTR ERV1 8 121 -282 1483 179 50 20 chr3 99076358 99076538 -118960620 + MER57A LTR ERV1 94 288 -115 2229 104 0 7 chr3 99076538 99076837 -118960321 + AluSg SINE Alu 1 297 -13 1483 179 50 20 chr3 99076837 99076957 -118960201 + MER57A LTR ERV1 288 403 0 541 266 35 15 chr3 99076961 99077164 -118959994 + L1ME3 LINE L1 5133 5339 -807 1452 243 86 72 chr3 99077181 99078190 -118958968 + L1ME3 LINE L1 4836 5866 -296 3343 167 142 4 chr3 99078190 99078916 -118958242 + LTR1B LTR ERV1 1 826 0 1452 243 86 72 chr3 99078916 99079141 -118958017 + L1ME3 LINE L1 5866 6086 -76 30 45 0 0 chr3 99079197 99079241 -118957917 + AT_rich Low_complexity Low_complexity 1 44 0 27 62 0 0 chr3 99079523 99079571 -118957587 + AT_rich Low_complexity Low_complexity 1 48 0 228 313 80 9 chr3 99079886 99079998 -118957160 + MIR3 SINE MIR 37 156 -52 2000 118 0 21 chr3 99081369 99081658 -118955500 - AluSx SINE Alu -29 283 1 232 227 45 15 chr3 99082767 99082833 -118954325 - MIR3 SINE MIR -21 187 120 22 35 0 0 chr3 99082921 99082950 -118954208 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr3 99083317 99083345 -118953813 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr3 99083386 99083412 -118953746 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 99083443 99083464 -118953694 + AT_rich Low_complexity Low_complexity 1 21 0 2174 92 0 0 chr3 99083875 99084158 -118953000 + AluSq SINE Alu 17 299 -14 1787 214 33 28 chr3 99084512 99084969 -118952189 + L1ME3 LINE L1 5516 5974 -188 1899 168 0 7 chr3 99085463 99085772 -118951386 - AluJo SINE Alu -3 309 3 1969 147 0 26 chr3 99086356 99086663 -118950495 - AluJb SINE Alu -13 299 1 11638 108 13 25 chr3 99086796 99088612 -118948546 + HERVH LTR ERV1 1000 2793 -4920 404 172 92 0 chr3 99188721 99188808 -118848350 + MER4A LTR ERV1 4 98 -566 1835 133 0 73 chr3 99188850 99189166 -118847992 + MER4A LTR ERV1 372 664 0 2161 215 12 30 chr3 99189773 99190713 -118846445 + L1MA7 LINE L1 4543 5435 -743 2270 90 20 0 chr3 99190981 99191280 -118845878 - AluSc SINE Alu -4 305 1 1536 294 122 25 chr3 99192049 99192785 -118844373 - L2 LINE L2 -624 2690 1883 570 335 19 19 chr3 99192814 99192981 -118844177 + L1MC4a LINE L1 5616 5785 -2023 1331 189 55 24 chr3 99192981 99193309 -118843849 + MER44D DNA MER2_type 2 609 0 570 335 19 19 chr3 99193309 99193448 -118843710 + L1MC4a LINE L1 5784 5922 -1886 3827 189 16 19 chr3 99193625 99194186 -118842972 + L1MA7 LINE L1 5466 6025 -266 2378 82 3 0 chr3 99194186 99194491 -118842667 + AluY SINE Alu 1 306 -5 3827 189 16 19 chr3 99194491 99194748 -118842410 + L1MA7 LINE L1 6025 6281 -10 3959 183 65 21 chr3 99194767 99195716 -118841442 + L1MB8 LINE L1 5198 6173 -5 192 252 219 17 chr3 99195981 99196100 -118841058 + MIR SINE MIR 12 154 -108 27 0 0 0 chr3 99196364 99196391 -118840767 + AT_rich Low_complexity Low_complexity 1 27 0 321 329 160 19 chr3 99197174 99197487 -118839671 + HAL1 LINE L1 535 891 -1616 235 319 111 22 chr3 99197661 99197796 -118839362 - L2 LINE L2 -3 3269 3123 24 0 0 0 chr3 99197993 99198017 -118839141 + AT_rich Low_complexity Low_complexity 1 24 0 4182 206 57 19 chr3 99199851 99200600 -118836558 + L1PA11 LINE L1 5395 6172 -2 38 39 0 0 chr3 99200600 99200652 -118836506 + AT_rich Low_complexity Low_complexity 1 52 0 25 0 0 0 chr3 99200799 99200824 -118836334 + AT_rich Low_complexity Low_complexity 1 25 0 207 288 76 0 chr3 99202460 99202526 -118834632 - MIR SINE MIR -8 254 184 369 0 0 0 chr3 99202775 99202816 -118834342 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 320 297 9 18 chr3 99203496 99203607 -118833551 + GA-rich Low_complexity Low_complexity 2 111 0 1956 137 20 0 chr3 99205971 99206271 -118830887 - AluSc SINE Alu -3 306 1 378 259 70 121 chr3 99206799 99207228 -118829930 + L2 LINE L2 1699 2105 -1209 794 268 92 37 chr3 99207583 99208042 -118829116 + MER113 DNA MER1_type? 19 502 -19 260 336 100 41 chr3 99208357 99208696 -118828462 + L2 LINE L2 2605 2963 -351 728 201 23 20 chr3 99208983 99209316 -118827842 + CT-rich Low_complexity Low_complexity 1 334 0 207 100 0 0 chr3 99209301 99209331 -118827827 + (TTCC)n Simple_repeat Simple_repeat 2 31 0 * 1495 214 0 26 chr3 99209331 99209644 -118827514 - AluJo SINE Alu -7 305 1 224 260 104 42 chr3 99210707 99210803 -118826355 - MIR SINE MIR -112 150 49 23 54 0 0 chr3 99211074 99211111 -118826047 + AT_rich Low_complexity Low_complexity 1 37 0 607 221 15 0 chr3 99211111 99211242 -118825916 + FLAM_A SINE Alu 1 133 0 356 299 109 76 chr3 99211409 99212223 -118824935 - L1M4 LINE L1 -816 5330 4490 985 131 27 16 chr3 99212309 99212492 -118824666 - L1MA4A LINE L1 0 6303 6119 1019 114 13 0 chr3 99212492 99212638 -118824520 + L1PA10 LINE L1 6017 6167 -1 690 159 2 0 chr3 99212638 99212764 -118824394 - L1MA4A LINE L1 -174 6129 6003 1285 72 72 0 chr3 99212904 99213084 -118824074 + AluSc SINE Alu 99 291 -18 506 295 153 7 chr3 99213090 99213371 -118823787 + L2 LINE L2 2219 2540 -774 292 236 169 45 chr3 99213453 99213631 -118823527 + L2 LINE L2 3114 3313 0 218 399 58 5 chr3 99214480 99214668 -118822490 + L2 LINE L2 2379 2576 -738 339 288 46 103 chr3 99214857 99215102 -118822056 + MIR SINE MIR 18 256 -6 1809 151 0 0 chr3 99215829 99216128 -118821030 - AluJb SINE Alu 0 307 9 1375 116 10 0 chr3 99216149 99216356 -118820802 - L1PA8A LINE L1 0 6131 5923 212 293 69 0 chr3 99220002 99220060 -118817098 + L2 LINE L2 3201 3262 -51 2318 60 0 0 chr3 99220356 99220672 -118816486 - AluY SINE Alu 0 316 1 593 225 34 28 chr3 99220735 99220913 -118816245 + LTR37B LTR ERV1 280 458 -10 204 180 60 20 chr3 99220918 99220968 -118816190 - MIR SINE MIR -71 191 140 290 262 278 8 chr3 99220993 99221119 -118816039 - MIR SINE MIR -99 163 4 2349 77 3 3 chr3 99221324 99221636 -118815522 - AluSx SINE Alu 0 312 1 3171 134 47 2 chr3 99222510 99223039 -118814119 - L1MA4A LINE L1 -338 5965 5413 11774 190 32 5 chr3 99223040 99225581 -118811577 - L1MA4A LINE L1 -812 5334 2726 870 254 10 5 chr3 99228154 99228351 -118808807 + MER63A DNA MER1_type 2 199 -11 1615 146 114 20 chr3 99228353 99228696 -118808462 + THE1C LTR MaLR 1 375 0 8588 127 84 10 chr3 99228696 99230103 -118807055 + THE1C-int LTR MaLR 1 1511 -69 186 328 127 30 chr3 99230804 99230938 -118806220 - MIR SINE MIR -37 225 79 358 346 59 20 chr3 99231460 99231662 -118805496 + L2 LINE L2 1864 2073 -1241 254 333 0 0 chr3 99232166 99232247 -118804911 + MIR SINE MIR 73 153 -109 5518 155 47 18 chr3 99232718 99233675 -118803483 + THE1C-int LTR MaLR 596 1580 0 1417 139 84 102 chr3 99233675 99234057 -118803101 + THE1C LTR MaLR 1 375 0 181 333 67 0 chr3 99234251 99234311 -118802847 + MIR SINE MIR 51 114 -148 1737 122 102 3 chr3 99234327 99234662 -118802496 - L1MA8 LINE L1 -1 6290 5923 290 167 37 0 chr3 99237210 99237264 -118799894 + MER96 DNA MER1_type? 29 84 -91 * 318 200 17 0 chr3 99237254 99237314 -118799844 - MER96 DNA MER1_type? -109 66 6 2765 3 0 0 chr3 99238795 99239095 -118798063 - AluYa5 SINE Alu -11 300 1 33 0 0 0 chr3 99239319 99239352 -118797806 + AT_rich Low_complexity Low_complexity 1 33 0 219 346 15 45 chr3 99241473 99241606 -118795552 + MIR SINE MIR 53 181 -81 25 31 0 0 chr3 99241772 99241804 -118795354 + AT_rich Low_complexity Low_complexity 1 32 0 310 326 30 15 chr3 99241999 99242134 -118795024 + L2 LINE L2 2065 2201 -1113 1005 143 0 30 chr3 99242135 99242379 -118794779 - AluJb SINE Alu -12 300 21 231 188 0 0 chr3 99242536 99242584 -118794574 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 1720 202 9 3 chr3 99242905 99243227 -118793931 + MER58B DNA MER1_type 1 324 -17 294 173 0 0 chr3 99243457 99243509 -118793649 - MER45 DNA AcHobo 0 1581 1530 472 204 0 0 chr3 99243594 99243682 -118793476 - MER45 DNA AcHobo -819 134 47 27 87 0 0 chr3 99245140 99245209 -118791949 + AT_rich Low_complexity Low_complexity 1 69 0 614 279 164 36 chr3 99245407 99245687 -118791471 - MLT1K LTR MaLR -15 573 258 27 29 0 0 chr3 99245935 99245969 -118791189 + AT_rich Low_complexity Low_complexity 1 34 0 676 244 28 28 chr3 99246639 99246852 -118790306 - L1MD2 LINE L1 -340 6019 5807 3192 191 43 22 chr3 99247101 99247258 -118789900 - L1 LINE L1 -808 5338 5186 232 25 75 0 chr3 99247258 99247298 -118789860 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 3192 191 43 22 chr3 99247298 99247864 -118789294 - L1 LINE L1 -960 5186 4600 3148 144 31 24 chr3 99247871 99248413 -118788745 - L1PA16 LINE L1 -1 6165 5620 698 186 0 0 chr3 99248413 99248553 -118788605 - L1MA7 LINE L1 -788 5358 5219 * 4010 183 47 47 chr3 99248541 99249497 -118787661 + L1MA7 LINE L1 5336 6291 0 28 48 0 0 chr3 99249522 99249564 -118787594 + AT_rich Low_complexity Low_complexity 1 42 0 2374 105 0 0 chr3 99249880 99250193 -118786965 + AluSq SINE Alu 1 313 0 2169 108 0 10 chr3 99250417 99250724 -118786434 - AluSg1 SINE Alu -5 304 1 21 0 0 0 chr3 99251579 99251600 -118785558 + AT_rich Low_complexity Low_complexity 1 21 0 7610 25 0 6 chr3 99251789 99253259 -118783899 - L1PA3 LINE L1 0 6155 4692 6157 20 0 0 chr3 99253261 99253977 -118783181 + L1P LINE L1 3904 4619 -1527 193 349 152 0 chr3 99254163 99254229 -118782929 + L2 LINE L2 3147 3222 -50 417 274 79 18 chr3 99254251 99254415 -118782743 - L2 LINE L2 -15 3298 3125 2156 101 0 14 chr3 99254415 99254711 -118782447 + AluSx SINE Alu 1 292 -20 209 333 11 11 chr3 99254769 99254859 -118782299 - MIR SINE MIR -120 142 53 210 37 0 0 chr3 99254859 99254886 -118782272 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 26 0 0 0 chr3 99255186 99255212 -118781946 + AT_rich Low_complexity Low_complexity 1 26 0 435 264 121 62 chr3 99255319 99255631 -118781527 + L1ME4a LINE L1 5318 5645 -476 5357 154 49 20 chr3 99255658 99256769 -118780389 - L1MA4A LINE L1 0 6303 5156 10231 31 3 0 chr3 99256891 99258878 -118778280 + L1PA4 LINE L1 4160 6149 -6 32 91 0 0 chr3 99258896 99258984 -118778174 + AT_rich Low_complexity Low_complexity 1 88 0 225 246 71 48 chr3 99259076 99259202 -118777956 + L1ME4a LINE L1 5960 6088 -33 185 91 121 0 chr3 99259583 99259616 -118777542 + L2 LINE L2 1383 1419 -1895 300 285 85 12 chr3 99259761 99259926 -118777232 - L1ME4a LINE L1 -201 5920 5744 396 148 0 0 chr3 99260105 99260166 -118776992 - MER75B DNA T2_type -182 61 1 420 286 105 20 chr3 99260249 99260497 -118776661 - L1M3 LINE L1 -629 5551 5283 322 302 90 47 chr3 99260670 99260850 -118776308 - L1M3 LINE L1 -1144 5002 4810 674 35 0 0 chr3 99260850 99260936 -118776222 - L1PA4 LINE L1 -4 6151 6066 322 302 90 47 chr3 99260936 99260967 -118776191 - L1M3 LINE L1 -1336 4810 4782 5841 88 23 9 chr3 99261373 99262243 -118774915 - L1PA13 LINE L1 -45 6118 5237 399 316 87 58 chr3 99262253 99262699 -118774459 - L1M3 LINE L1 -2580 3566 3108 186 43 0 0 chr3 99263182 99263205 -118773953 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2430 222 34 16 chr3 99263879 99264575 -118772583 + Tigger7 DNA MER2_type 1 2582 -5 443 150 38 0 chr3 99264634 99264714 -118772444 + L1MC1 LINE L1 6247 6329 -4 34 0 0 0 chr3 99265350 99265384 -118771774 + AT_rich Low_complexity Low_complexity 1 34 0 1444 119 57 0 chr3 99265837 99266064 -118771094 - L1MC1 LINE L1 0 6333 6094 579 167 10 0 chr3 99266068 99266164 -118770994 - MLT1D LTR MaLR -404 101 5 1845 150 3 0 chr3 99268690 99268977 -118768181 + AluSx SINE Alu 1 288 -24 21 0 0 0 chr3 99269167 99269188 -118767970 + AT_rich Low_complexity Low_complexity 1 21 0 194 265 132 0 chr3 99269398 99269466 -118767692 - L3b LINE CR1 -175 1408 1332 1164 260 83 18 chr3 99269615 99270115 -118767043 - L1MEc LINE L1 -864 2037 1913 534 323 5 16 chr3 99270300 99270489 -118766669 - MLT1-int LTR MaLR -484 887 701 267 319 0 11 chr3 99270475 99270566 -118766592 - L1MEc LINE L1 -4704 1836 1747 * 1875 144 3 7 chr3 99270620 99270930 -118766228 - AluSx SINE Alu 0 309 1 1302 232 25 9 chr3 99271108 99271587 -118765571 - MLT1D-int LTR MaLR -769 602 1 1526 232 48 48 chr3 99271587 99272092 -118765066 - MLT1D LTR MaLR 0 505 1 1264 258 29 64 chr3 99272106 99272428 -118764730 - L1MEc LINE L1 -5561 969 668 2132 123 13 0 chr3 99272428 99272736 -118764422 + AluSx SINE Alu 1 312 0 1264 258 29 64 chr3 99272736 99272898 -118764260 - L1MEc LINE L1 -5862 668 502 2040 238 31 65 chr3 99273116 99273814 -118763344 - L1ME3A LINE L1 -8 6162 5488 375 23 0 0 chr3 99274616 99274660 -118762498 + (TG)n Simple_repeat Simple_repeat 2 45 0 183 129 0 0 chr3 99275147 99275178 -118761980 + (TC)n Simple_repeat Simple_repeat 1 31 0 28 48 0 0 chr3 99276402 99276444 -118760714 + AT_rich Low_complexity Low_complexity 1 42 0 1095 252 174 22 chr3 99277137 99277174 -118759984 - MLT2B1 LTR ERVL -4 516 486 1036 15 15 0 chr3 99277174 99277304 -118759854 + (TAGA)n Simple_repeat Simple_repeat 3 134 0 1095 252 174 22 chr3 99277304 99277714 -118759444 - MLT2B1 LTR ERVL -34 486 1 232 219 0 0 chr3 99277907 99277948 -118759210 - L2 LINE L2 -14 3258 3218 472 309 43 47 chr3 99278200 99278537 -118758621 + L1M3d LINE L1 505 1098 -5205 2233 253 35 25 chr3 99278681 99279575 -118757583 + L1MB2 LINE L1 778 1784 -4519 * 11625 191 15 55 chr3 99279558 99280844 -118756314 + L1MB2 LINE L1 2703 4039 -2368 2073 235 19 58 chr3 99280844 99280892 -118756266 - MLT2B3 LTR ERVL -2 552 504 354 98 0 0 chr3 99280892 99280943 -118756215 + (CA)n Simple_repeat Simple_repeat 2 52 0 2073 235 19 58 chr3 99280943 99281468 -118755690 - MLT2B3 LTR ERVL -50 504 1 11625 191 15 55 chr3 99281468 99282980 -118754178 + L1MB2 LINE L1 4039 5610 -797 2071 122 7 3 chr3 99282980 99283283 -118753875 + AluSx SINE Alu 1 304 -8 11625 191 15 55 chr3 99283283 99283454 -118753704 + L1MB2 LINE L1 5610 5786 -621 2405 81 0 0 chr3 99283454 99283752 -118753406 + AluY SINE Alu 1 298 -13 11625 191 15 55 chr3 99283752 99284592 -118752566 + L1MB2 LINE L1 5786 6327 -80 337 105 0 181 chr3 99284691 99284796 -118752362 + L1MB2 LINE L1 6321 6406 -1 251 371 59 24 chr3 99284984 99285154 -118752004 + MIR SINE MIR 70 245 -17 480 305 68 30 chr3 99285323 99285559 -118751599 - MIR SINE MIR -17 245 1 206 32 32 0 chr3 99286475 99286506 -118750652 + (CA)n Simple_repeat Simple_repeat 1 32 0 802 251 28 45 chr3 99287857 99288148 -118749010 + L1ME2 LINE L1 5870 6155 -9 321 47 0 0 chr3 99288441 99288484 -118748674 + (TG)n Simple_repeat Simple_repeat 2 44 0 37487 82 10 16 chr3 99288766 99289333 -118747825 + L1PA6 LINE L1 11 580 -5587 7463 26 6 1 chr3 99289333 99290673 -118746485 + L1PA3 LINE L1 4808 6152 -3 37487 82 10 16 chr3 99290673 99296304 -118740854 + L1PA6 LINE L1 580 6167 0 511 286 19 7 chr3 99296513 99296667 -118740491 + MIR SINE MIR 99 254 -8 2484 129 43 12 chr3 99296703 99297122 -118740036 + MSTB1 LTR MaLR 1 432 0 776 216 90 68 chr3 99298245 99298530 -118738628 + L1MD3 LINE L1 7035 7537 -458 2349 86 3 0 chr3 99298650 99298952 -118738206 - AluSx SINE Alu -9 303 1 21 71 0 0 chr3 99299006 99299048 -118738110 + AT_rich Low_complexity Low_complexity 1 42 0 285 297 181 7 chr3 99300324 99300462 -118736696 + MIR SINE MIR 100 261 -1 26 0 0 0 chr3 99301209 99301235 -118735923 + AT_rich Low_complexity Low_complexity 1 26 0 1452 103 8 65 chr3 99301829 99302090 -118735068 - L1PB1 LINE L1 0 6151 5906 1797 157 0 4 chr3 99302090 99302371 -118734787 - AluSx SINE Alu -32 280 1 446 48 0 0 chr3 99302373 99302436 -118734722 - AluY SINE Alu -4 306 244 775 279 54 17 chr3 99302453 99302693 -118734465 + MIR SINE MIR 11 259 -3 207 289 82 21 chr3 99302698 99302795 -118734363 + MIR SINE MIR 160 262 0 293 306 252 0 chr3 99302916 99303063 -118734095 + MIR SINE MIR 20 203 -59 533 81 41 2 chr3 99303117 99303207 -118733951 + L1M LINE L1 5304 5397 -771 253 230 40 0 chr3 99303207 99303281 -118733877 + (TA)n Simple_repeat Simple_repeat 2 78 0 188 161 0 0 chr3 99304160 99304191 -118732967 - L2 LINE L2 -24 3248 3218 3063 179 21 50 chr3 99304313 99305217 -118731941 + L1MA9 LINE L1 5071 5947 -365 195 209 0 0 chr3 99305774 99305817 -118731341 + L2 LINE L2 3266 3308 -5 344 284 20 0 chr3 99305823 99305925 -118731233 + (TGGA)n Simple_repeat Simple_repeat 3 106 0 384 282 18 9 chr3 99306066 99306176 -118730982 - MIR3 SINE MIR -1 207 97 22 94 0 0 chr3 99306381 99306445 -118730713 + AT_rich Low_complexity Low_complexity 1 64 0 2009 110 17 7 chr3 99307399 99307700 -118729458 + AluSx SINE Alu 1 304 -8 266 335 38 43 chr3 99307713 99307898 -118729260 - L2 LINE L2 -52 3261 3078 1808 287 125 17 chr3 99307903 99308854 -118728304 - L2 LINE L2 -134 3179 2120 1438 196 29 3 chr3 99309035 99309341 -118727817 + MLT1B LTR MaLR 45 358 -32 869 290 109 38 chr3 99309659 99310393 -118726765 + L1ME3A LINE L1 4388 5173 -973 2644 26 0 0 chr3 99310416 99310724 -118726434 - L1PA3 LINE L1 -3 6152 5845 5211 22 3 0 chr3 99310724 99311721 -118725437 + L1P1 LINE L1 4775 5774 -381 1770 259 53 18 chr3 99311754 99312402 -118724756 + L1ME3A LINE L1 5198 5863 -307 1004 255 49 62 chr3 99312398 99312830 -118724328 + L1ME3A LINE L1 5736 6161 -9 * 1678 181 0 35 chr3 99312846 99313161 -118723997 + AluJo SINE Alu 6 309 -3 362 287 35 46 chr3 99313719 99313893 -118723265 + L1ME3A LINE L1 5965 6136 -34 22 0 0 0 chr3 99314331 99314353 -118722805 + AT_rich Low_complexity Low_complexity 1 22 0 6146 87 22 5 chr3 99314360 99315264 -118721894 - L1PB1 LINE L1 0 6151 5233 330 218 19 77 chr3 99315723 99315879 -118721279 + L1ME LINE L1 5538 5684 -437 185 279 0 0 chr3 99316506 99316549 -118720609 + L2 LINE L2 3230 3272 0 473 248 26 8 chr3 99317030 99317147 -118720011 + MLT1I LTR MaLR 275 393 -16 430 303 35 66 chr3 99317420 99317737 -118719421 - MLT1J LTR MaLR -10 501 195 13951 184 25 10 chr3 99318166 99321671 -118715487 + L1PA13 LINE L1 2354 5911 -252 14440 172 59 6 chr3 99321677 99327835 -118709323 + L1PB1 LINE L1 6 6527 -340 223 28 56 0 chr3 99327835 99327871 -118709287 + (TA)n Simple_repeat Simple_repeat 2 39 0 14440 172 59 6 chr3 99327871 99328231 -118708927 + L1PB1 LINE L1 6527 6867 0 1409 161 11 4 chr3 99328443 99328703 -118708455 + L1PA13 LINE L1 5891 6152 -11 4717 202 72 38 chr3 99329259 99332100 -118705058 - L1MA5 LINE L1 -5 7357 4428 3340 179 61 27 chr3 99332103 99332887 -118704271 - L1MA5 LINE L1 -3976 3233 2423 470 282 127 38 chr3 99332891 99333182 -118703976 - L1MA5 LINE L1 -5352 1857 1541 1477 292 59 31 chr3 99333216 99333845 -118703313 - L1MA5 LINE L1 -6574 635 3 349 339 34 0 chr3 99335542 99335660 -118701498 - L2 LINE L2 0 3272 3151 2191 125 3 0 chr3 99335868 99336165 -118700993 - AluSx SINE Alu -14 298 1 265 254 0 0 chr3 99337231 99337286 -118699872 + MIR SINE MIR 62 116 -146 6761 171 14 2 chr3 99337318 99338533 -118698625 - L1P LINE L1 -1191 4955 3726 346 253 50 30 chr3 99338533 99338632 -118698526 + MIR SINE MIR 162 262 0 221 255 0 0 chr3 99338642 99338693 -118698465 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 183 80 0 0 chr3 99338842 99338867 -118698291 + (T)n Simple_repeat Simple_repeat 1 25 0 7331 36 5 0 chr3 99338872 99340432 -118696726 - L1PA3 LINE L1 0 6155 4587 9944 34 0 0 chr3 99340434 99341627 -118695531 + L1PA3 LINE L1 3400 4592 -1554 233 342 51 0 chr3 99342426 99342543 -118694615 + LTR16A1 LTR ERVL 334 456 -1 201 374 88 11 chr3 99342594 99342685 -118694473 - MIR SINE MIR -148 114 17 1729 179 0 7 chr3 99342687 99342978 -118694180 - AluJb SINE Alu -13 299 11 2226 103 3 0 chr3 99343679 99343970 -118693188 - AluSx SINE Alu -20 292 1 32 57 0 0 chr3 99344312 99344365 -118692793 + AT_rich Low_complexity Low_complexity 1 53 0 22 0 0 0 chr3 99344442 99344464 -118692694 + AT_rich Low_complexity Low_complexity 1 22 0 10054 170 21 11 chr3 99344659 99345461 -118691697 + L1P LINE L1 3351 4143 -2003 2333 99 0 3 chr3 99345461 99345773 -118691385 + AluY SINE Alu 1 311 0 10054 170 21 11 chr3 99345773 99346928 -118690230 + L1P LINE L1 4143 5328 -818 7890 101 10 3 chr3 99346923 99348097 -118689061 - L1P LINE L1 -2225 3921 2739 * 3170 95 56 0 chr3 99348131 99348613 -118688545 + L1P LINE L1 4302 4810 -1336 318 26 0 0 chr3 99348613 99348652 -118688506 - HERV17 LTR ERV1 -1686 6940 6902 * 41137 47 15 3 chr3 99348643 99352837 -118684321 - HERV17 LTR ERV1 -3559 5067 803 198 0 0 0 chr3 99352837 99352859 -118684299 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 41137 47 15 3 chr3 99352859 99353672 -118683486 - HERV17 LTR ERV1 -7823 803 1 4140 51 2 6 chr3 99353672 99354199 -118682959 - LTR17 LTR ERV1 0 780 256 24 32 0 0 chr3 99354201 99354232 -118682926 + AT_rich Low_complexity Low_complexity 1 31 0 236 243 14 14 chr3 99354381 99354445 -118682713 + (TA)n Simple_repeat Simple_repeat 2 68 -7 2147 107 7 13 chr3 99354445 99354743 -118682415 - AluY SINE Alu -15 296 1 236 243 14 14 chr3 99354743 99354752 -118682406 + (TA)n Simple_repeat Simple_repeat 67 75 0 313 277 59 17 chr3 99355483 99355602 -118681556 + MIR SINE MIR 135 258 -4 1543 184 24 14 chr3 99356310 99356598 -118680560 - AluJb SINE Alu -19 293 3 2071 201 24 24 chr3 99357672 99358129 -118679029 - MSTB2 LTR MaLR 0 457 1 275 244 73 24 chr3 99358738 99358861 -118678297 - MER65A LTR ERV1 -316 129 1 408 324 50 0 chr3 99359108 99359247 -118677911 - MIR SINE MIR -13 249 104 3285 139 27 38 chr3 99359308 99359910 -118677248 - L1MC1 LINE L1 -2 6331 5737 22 0 0 0 chr3 99360064 99360086 -118677072 + AT_rich Low_complexity Low_complexity 1 22 0 404 237 44 9 chr3 99360255 99360369 -118676789 + MIR SINE MIR 106 223 -39 22 35 0 0 chr3 99360542 99360571 -118676587 + AT_rich Low_complexity Low_complexity 1 29 0 258 271 59 0 chr3 99360697 99360782 -118676376 + HAL1 LINE L1 1634 1723 -784 5472 161 29 14 chr3 99360837 99362163 -118674995 + L1MA4A LINE L1 4963 6298 -5 5472 249 82 26 chr3 99362874 99366119 -118671039 - L1ME1 LINE L1 -5 6161 2572 200 33 0 33 chr3 99366123 99366153 -118671005 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 241 250 125 0 chr3 99366271 99366351 -118670807 + MIR SINE MIR 167 256 -6 272 372 112 23 chr3 99366397 99366870 -118670288 + L2 LINE L2 1854 2368 -946 193 320 78 10 chr3 99367036 99367139 -118670019 + MIR SINE MIR 109 218 -44 718 233 23 11 chr3 99367870 99368046 -118669112 + MER5B DNA MER1_type 1 178 0 331 244 142 89 chr3 99368306 99368531 -118668627 + MIR SINE MIR 20 256 -6 231 36 0 0 chr3 99368824 99368852 -118668306 + (CA)n Simple_repeat Simple_repeat 1 28 0 405 273 79 0 chr3 99368863 99369002 -118668156 - MER103 DNA DNA -9 157 8 655 190 9 0 chr3 99369302 99369418 -118667740 + FLAM_C SINE Alu 2 118 -15 800 147 79 17 chr3 99369683 99369860 -118667298 - MER53 DNA DNA 0 189 2 22 35 0 0 chr3 99370627 99370656 -118666502 + AT_rich Low_complexity Low_complexity 1 29 0 2320 113 34 8 chr3 99372608 99372963 -118664195 + THE1B LTR MaLR 1 364 0 1718 186 46 9 chr3 99373829 99374179 -118662979 - MLT1A1 LTR MaLR -2 363 1 2174 120 7 0 chr3 99374983 99375275 -118661883 + AluSx SINE Alu 1 294 -18 2178 103 53 36 chr3 99375306 99375664 -118661494 + THE1B LTR MaLR 1 364 0 10959 102 6 35 chr3 99375664 99376031 -118661127 + THE1B-int LTR MaLR 1 377 -1203 2250 108 3 0 chr3 99376031 99376327 -118660831 - AluSq SINE Alu -16 297 1 10959 102 6 35 chr3 99376327 99377587 -118659571 + THE1B-int LTR MaLR 377 1580 0 2318 105 45 14 chr3 99377587 99377940 -118659218 + THE1B LTR MaLR 1 364 0 190 270 79 79 chr3 99377979 99378069 -118659089 - L2 LINE L2 -276 3037 2945 730 227 43 22 chr3 99378069 99378254 -118658904 - MER5A DNA MER1_type 0 189 1 190 270 79 79 chr3 99378254 99378289 -118658869 - L2 LINE L2 -367 2946 2912 1714 168 33 0 chr3 99379101 99379396 -118657762 + AluJb SINE Alu 1 304 0 307 281 238 0 chr3 99379530 99379715 -118657443 - L1MC4a LINE L1 -1837 5971 5743 330 263 178 17 chr3 99379885 99380003 -118657155 - L2 LINE L2 -1 3312 3176 1980 100 38 38 chr3 99380704 99380995 -118656163 + AluSq SINE Alu 1 291 -22 22 70 0 0 chr3 99382837 99382880 -118654278 + AT_rich Low_complexity Low_complexity 1 43 0 448 194 223 10 chr3 99384220 99384323 -118652835 + FLAM_A SINE Alu 1 125 -8 21 57 0 0 chr3 99384415 99384450 -118652708 + AT_rich Low_complexity Low_complexity 1 35 0 249 228 159 101 chr3 99385091 99385209 -118651949 - MIR SINE MIR 0 262 127 2293 62 3 74 chr3 99385209 99385532 -118651626 - AluY SINE Alu -7 304 5 249 228 159 101 chr3 99385532 99385602 -118651556 - MIR SINE MIR -135 127 63 4220 177 66 72 chr3 99385631 99386586 -118650572 - MER52A LTR ERV1 0 1755 807 427 111 97 0 chr3 99386599 99386671 -118650487 - MER52A-int LTR ERV1 -6650 441 363 582 75 0 0 chr3 99386671 99386751 -118650407 + (GGAA)n Simple_repeat Simple_repeat 1 80 0 388 107 18 0 chr3 99386760 99386816 -118650342 - MER52A-int LTR ERV1 -6671 420 364 288 77 0 0 chr3 99386817 99386856 -118650302 + (GGGA)n Simple_repeat Simple_repeat 1 39 0 2920 136 19 0 chr3 99387104 99387537 -118649621 - MER52A-int LTR ERV1 -6650 441 1 7020 229 37 32 chr3 99387537 99389226 -118647932 - MER52A LTR ERV1 0 1755 1 2022 148 3 3 chr3 99389258 99389563 -118647595 - AluSx SINE Alu -7 305 1 1641 172 38 0 chr3 99390000 99390291 -118646867 - AluSx SINE Alu -10 302 1 247 262 93 93 chr3 99390837 99391127 -118646031 + MLT-int LTR MaLR 1437 1726 -9 224 54 54 0 chr3 99392435 99392472 -118644686 + T-rich Low_complexity Low_complexity 5 43 0 1792 152 22 29 chr3 99392511 99392826 -118644332 - AluSq SINE Alu 0 313 1 2255 98 3 3 chr3 99393122 99393428 -118643730 + AluSp SINE Alu 1 306 -7 682 233 25 40 chr3 99393519 99393721 -118643437 + MIR SINE MIR 64 262 0 2032 129 0 3 chr3 99394891 99395214 -118641944 + AluSx SINE Alu 1 322 0 598 98 67 0 chr3 99395684 99395940 -118641218 + (TA)n Simple_repeat Simple_repeat 1 273 0 840 176 18 29 chr3 99396125 99396295 -118640863 + MER5A DNA MER1_type 21 188 -1 1738 124 52 48 chr3 99396629 99396945 -118640213 - AluSx SINE Alu 0 312 3 21 57 0 0 chr3 99397014 99397049 -118640109 + AT_rich Low_complexity Low_complexity 1 35 0 25 65 0 0 chr3 99397739 99397785 -118639373 + AT_rich Low_complexity Low_complexity 1 46 0 4504 81 56 6 chr3 99397817 99398446 -118638712 - PABL_A LTR ERV1 0 660 1 22 70 0 0 chr3 99400305 99400348 -118636810 + AT_rich Low_complexity Low_complexity 1 43 0 221 391 23 39 chr3 99401333 99401461 -118635697 - L2 LINE L2 -8 3264 3139 237 325 25 0 chr3 99401974 99402054 -118635104 - L2 LINE L2 -679 2635 2554 21 0 0 0 chr3 99402096 99402117 -118635041 + AT_rich Low_complexity Low_complexity 1 21 0 1738 179 14 0 chr3 99402881 99403171 -118633987 - AluJb SINE Alu -18 294 1 1655 181 0 30 chr3 99403173 99403477 -118633681 - AluJo SINE Alu -17 295 1 21 57 0 0 chr3 99406789 99406824 -118630334 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr3 99408494 99408516 -118628642 + AT_rich Low_complexity Low_complexity 1 22 0 306 288 61 56 chr3 99409779 99409977 -118627181 - L1MEd LINE L1 -4876 1243 1045 600 282 87 88 chr3 99410010 99410238 -118626920 - L1MEd LINE L1 -5159 960 733 2299 92 6 22 chr3 99410238 99410555 -118626603 - AluSx SINE Alu 0 312 1 600 282 87 88 chr3 99410555 99411018 -118626140 - L1MEd LINE L1 -5386 733 270 329 331 47 16 chr3 99412779 99412906 -118624252 + L2 LINE L2 3182 3312 -1 1226 202 13 29 chr3 99413584 99413891 -118623267 - Charlie1 DNA MER1_type -816 1945 1644 2009 152 0 16 chr3 99414432 99414742 -118622416 + AluSx SINE Alu 1 305 -7 346 286 90 8 chr3 99414872 99415005 -118622153 + L2 LINE L2 2981 3124 -189 1688 287 82 28 chr3 99415042 99415931 -118621227 + L1MEc LINE L1 499 1435 -4961 996 167 6 0 chr3 99416264 99416438 -118620720 - L1PA14 LINE L1 -14 6147 5973 3462 150 0 7 chr3 99416438 99417398 -118619760 + L1P4 LINE L1 4680 5631 -530 258 245 0 0 chr3 99417415 99417468 -118619690 + MER58B DNA MER1_type 202 254 -87 302 198 0 123 chr3 99417521 99417581 -118619577 + L1MEc LINE L1 3050 3093 -3122 1978 128 10 19 chr3 99417581 99417894 -118619264 + AluSx SINE Alu 1 310 -2 302 198 0 123 chr3 99417894 99417939 -118619219 + L1MEc LINE L1 3093 3142 -3073 272 146 22 124 chr3 99417940 99418029 -118619129 + MER58B DNA MER1_type 256 335 -6 2487 250 76 7 chr3 99418054 99418974 -118618184 + L1MEc LINE L1 2704 3687 -2528 1146 238 21 39 chr3 99418974 99419306 -118617852 - LTR53 LTR ERVL 0 519 194 507 194 34 134 chr3 99419491 99419684 -118617474 + L1MEc LINE L1 3683 3843 -2372 2078 102 4 0 chr3 99419684 99419950 -118617208 - AluSx SINE Alu -45 267 1 507 194 34 134 chr3 99419950 99420024 -118617134 + L1MEc LINE L1 3843 3923 -2292 27 0 0 0 chr3 99420074 99420101 -118617057 + AT_rich Low_complexity Low_complexity 1 27 0 408 250 25 77 chr3 99420265 99420461 -118616697 - HAL1 LINE L1 -1375 1132 947 1942 198 47 9 chr3 99420567 99421017 -118616141 + MLT1C LTR MaLR 1 467 0 263 24 0 49 chr3 99421133 99421174 -118615984 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 639 217 13 0 chr3 99421244 99421396 -118615762 - MLT2B1 LTR ERVL -357 163 10 1430 191 50 49 chr3 99421404 99421688 -118615470 - ERVL-B1 LTR ERVL -3 5651 5383 261 0 0 0 chr3 99421688 99421717 -118615441 + (CA)n Simple_repeat Simple_repeat 2 30 0 1430 191 50 49 chr3 99421717 99421949 -118615209 - ERVL-B1 LTR ERVL -271 5383 5153 815 275 91 37 chr3 99422393 99422768 -118614390 + HAL1 LINE L1 1 395 -2112 379 237 59 34 chr3 99422987 99423105 -118614053 + HAL1 LINE L1 2328 2448 -59 265 304 152 42 chr3 99423327 99423518 -118613640 + MLT1J LTR MaLR 248 459 -52 26 30 0 0 chr3 99423593 99423626 -118613532 + AT_rich Low_complexity Low_complexity 1 33 0 240 313 18 27 chr3 99423777 99423889 -118613269 + L2 LINE L2 3189 3299 -14 965 196 70 10 chr3 99423976 99424175 -118612983 - MER20 DNA MER1_type -4 215 5 21 0 0 0 chr3 99424491 99424512 -118612646 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 99426026 99426047 -118611111 + AT_rich Low_complexity Low_complexity 1 21 0 384 230 80 40 chr3 99426587 99426687 -118610471 - MIR SINE MIR -109 153 50 192 200 0 0 chr3 99427766 99427816 -118609342 + (CCG)n Simple_repeat Simple_repeat 2 51 0 227 250 23 11 chr3 99428232 99428320 -118608838 + (CGG)n Simple_repeat Simple_repeat 2 90 0 275 459 0 0 chr3 99428731 99428840 -118608318 + G-rich Low_complexity Low_complexity 1 109 0 21 0 0 0 chr3 99429980 99430001 -118607157 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 99430462 99430483 -118606675 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 99433054 99433078 -118604080 + AT_rich Low_complexity Low_complexity 1 24 0 2115 84 3 18 chr3 99435814 99436125 -118601033 - AluSx SINE Alu 0 307 1 2848 187 77 50 chr3 99436662 99436765 -118600393 - ERVL-B1 LTR ERVL -896 4868 4769 181 118 0 29 chr3 99436765 99436799 -118600359 - L2 LINE L2 -1621 1693 1661 2848 187 77 50 chr3 99436799 99437335 -118599823 - ERVL-B1 LTR ERVL -995 4769 4178 1383 173 83 43 chr3 99437338 99438022 -118599136 - LTR1B LTR ERV1 0 826 34 10313 182 38 28 chr3 99438029 99440134 -118597024 - ERVL-B1 LTR ERVL -1578 4186 2060 2930 272 46 32 chr3 99440139 99441235 -118595923 - ERVL-B1 LTR ERVL -4542 1112 2 1575 204 23 114 chr3 99441236 99441806 -118595352 - MLT2B1 LTR ERVL 0 520 3 299 243 60 64 chr3 99442430 99442529 -118594629 + HAL1 LINE L1 869 967 -1540 2157 113 7 3 chr3 99442529 99442820 -118594338 + AluSg SINE Alu 1 292 -18 299 243 60 64 chr3 99442820 99442938 -118594220 + HAL1 LINE L1 967 1085 -1422 256 298 29 0 chr3 99443000 99443104 -118594054 - HAL1 LINE L1 -586 1921 1815 40 49 0 0 chr3 99443126 99443187 -118593971 + AT_rich Low_complexity Low_complexity 1 61 0 953 274 152 49 chr3 99443266 99444008 -118593150 + HAL1 LINE L1 1537 2384 -123 1458 183 0 68 chr3 99444008 99444330 -118592828 + AluJo SINE Alu 3 302 -10 953 274 152 49 chr3 99444330 99444463 -118592695 + HAL1 LINE L1 2384 2502 -5 1791 134 75 67 chr3 99444569 99444941 -118592217 + THE1C LTR MaLR 1 375 0 28 48 0 0 chr3 99445954 99445996 -118591162 + AT_rich Low_complexity Low_complexity 1 42 0 2365 75 16 13 chr3 99446000 99446308 -118590850 + AluSc SINE Alu 1 309 0 22 80 0 0 chr3 99446318 99446368 -118590790 + AT_rich Low_complexity Low_complexity 1 50 0 342 279 65 7 chr3 99446752 99446906 -118590252 - L1ME LINE L1 -331 5790 5628 1605 83 135 0 chr3 99446907 99447136 -118590022 + AluY SINE Alu 34 293 -18 718 177 69 0 chr3 99447385 99447515 -118589643 + FRAM SINE Alu 19 157 -19 24 0 0 0 chr3 99447515 99447539 -118589619 + AT_rich Low_complexity Low_complexity 1 24 0 988 238 56 27 chr3 99447560 99447934 -118589224 + L1ME1 LINE L1 3953 4337 -1809 2112 231 99 49 chr3 99447940 99448856 -118588302 + L1ME1 LINE L1 5204 6162 -4 1275 241 30 68 chr3 99448910 99449280 -118587878 - MLT1H LTR MaLR -183 366 11 319 179 62 80 chr3 99449327 99449439 -118587719 - L1MC5 LINE L1 -1000 6961 6852 401 217 120 11 chr3 99449463 99449555 -118587603 + MLT2E LTR ERVL 34 135 -493 404 302 6 34 chr3 99449812 99449991 -118587167 - L1MC4a LINE L1 -927 6881 6708 235 208 10 115 chr3 99450067 99450163 -118586995 - L2 LINE L2 -100 3213 3128 * 554 217 54 23 chr3 99450159 99450288 -118586870 + L2 LINE L2 3180 3312 -1 270 303 110 0 chr3 99450361 99450470 -118586688 + MER91C DNA MER1_type 20 140 0 181 330 35 75 chr3 99450476 99450676 -118586482 + L2 LINE L2 2293 2484 -830 4216 116 96 93 chr3 99450705 99452082 -118585076 + pTR5 LTR ERV1 743 2438 0 2286 75 0 37 chr3 99452421 99452742 -118584416 - AluY SINE Alu -2 309 1 317 119 34 0 chr3 99453563 99453622 -118583536 + GA-rich Low_complexity Low_complexity 3 63 0 2043 132 0 17 chr3 99453647 99453943 -118583215 + AluSx SINE Alu 3 293 -19 23 0 0 0 chr3 99454505 99454528 -118582630 + AT_rich Low_complexity Low_complexity 1 23 0 2346 108 0 0 chr3 99454744 99455041 -118582117 + AluSx SINE Alu 1 297 -15 1678 201 65 2 chr3 99455130 99455542 -118581616 + L1MA7 LINE L1 5848 6285 -6 2201 102 3 0 chr3 99455548 99455859 -118581299 - AluSp SINE Alu 0 312 1 21 71 0 0 chr3 99455865 99455907 -118581251 + AT_rich Low_complexity Low_complexity 1 42 0 2401 161 67 22 chr3 99455964 99456515 -118580643 + L1MA4 LINE L1 3939 4514 -1632 1863 168 75 10 chr3 99456520 99456907 -118580251 + MSTA LTR MaLR 5 416 -12 1373 127 11 84 chr3 99456913 99457267 -118579891 - MER4A LTR ERV1 -17 647 261 573 137 32 0 chr3 99457267 99457362 -118579796 - MER4A LTR ERV1 -566 98 1 5481 156 13 14 chr3 99457390 99457444 -118579714 + L1MA4 LINE L1 4512 4565 -1735 2141 131 53 11 chr3 99457444 99457804 -118579354 - THE1C LTR MaLR 0 375 1 5481 156 13 14 chr3 99457804 99459534 -118577624 + L1MA4 LINE L1 4565 6292 -8 571 309 27 42 chr3 99460121 99460454 -118576704 - LTR16B LTR ERVL -2 462 135 470 301 64 18 chr3 99460729 99460948 -118576210 + HAL1 LINE L1 1441 1669 -838 200 217 0 0 chr3 99461016 99461062 -118576096 + A-rich Low_complexity Low_complexity 1 46 0 3992 174 77 12 chr3 99461074 99461849 -118575309 - LTR1B LTR ERV1 0 826 1 715 263 34 38 chr3 99461965 99462227 -118574931 - LTR16C LTR ERVL 0 491 231 235 254 15 0 chr3 99462208 99462275 -118574883 + LTR1B LTR ERV1 303 370 -456 * 449 366 50 1 chr3 99462780 99463279 -118573879 - ERVL LTR ERVL -573 5191 4625 2371 185 128 67 chr3 99463279 99464057 -118573101 + LTR1B LTR ERV1 1 826 0 449 366 50 1 chr3 99464057 99464110 -118573048 - ERVL LTR ERVL -1139 4625 4576 644 324 45 18 chr3 99464188 99464743 -118572415 - ERVL LTR ERVL -1398 4256 3679 237 270 164 19 chr3 99464743 99465102 -118572056 + L1M4 LINE L1 2822 3232 -2914 443 382 40 19 chr3 99465113 99465435 -118571723 + L1ME3A LINE L1 5618 5946 -224 45 55 0 0 chr3 99466163 99466236 -118570922 + AT_rich Low_complexity Low_complexity 1 73 0 315 289 67 19 chr3 99467622 99467726 -118569432 + L2 LINE L2 3143 3251 -21 228 253 130 71 chr3 99467823 99467977 -118569181 - MIR SINE MIR -34 228 66 679 200 0 47 chr3 99468124 99468235 -118568923 + FLAM_C SINE Alu 1 105 -207 1714 135 61 71 chr3 99468235 99468613 -118568545 - THE1C LTR MaLR -1 374 1 679 200 0 47 chr3 99468613 99468651 -118568507 + FLAM_C SINE Alu 105 143 -169 27 29 0 0 chr3 99468664 99468698 -118568460 + AT_rich Low_complexity Low_complexity 1 34 0 1214 283 144 20 chr3 99468973 99469467 -118567691 - MLT1H1 LTR MaLR 0 555 1 267 336 42 28 chr3 99469870 99470013 -118567145 - MIR3 SINE MIR -19 189 45 2053 100 3 37 chr3 99470240 99470540 -118566618 - AluSc SINE Alu -19 290 1 240 143 0 0 chr3 99470600 99470649 -118566509 + L1MA8 LINE L1 6243 6291 0 771 226 43 4 chr3 99470655 99470912 -118566246 + L1M4 LINE L1 3154 3420 -2726 1971 114 48 0 chr3 99471154 99471444 -118565714 - AluSx SINE Alu -8 304 1 8612 183 35 50 chr3 99571802 99573114 -118464044 + L1M1 LINE L1 3204 4476 -1760 1295 173 165 0 chr3 99573114 99573362 -118463796 + AluSx SINE Alu 3 291 -21 8612 183 35 50 chr3 99573362 99574365 -118462793 + L1M1 LINE L1 4476 5493 -743 3924 204 23 42 chr3 99574468 99575180 -118461978 + L1M1 LINE L1 3115 3839 -3726 2456 57 7 0 chr3 99575180 99575481 -118461677 + AluY SINE Alu 1 303 -8 3924 204 23 42 chr3 99575481 99576301 -118460857 + L1M1 LINE L1 3839 4634 -2931 886 207 14 72 chr3 99576879 99577101 -118460057 - MER20 DNA MER1_type 0 219 11 21 0 0 0 chr3 99577259 99577280 -118459878 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr3 99577559 99577590 -118459568 + AT_rich Low_complexity Low_complexity 1 31 0 204 282 110 7 chr3 99577600 99577718 -118459440 + MIR SINE MIR 9 142 -66 269 254 164 36 chr3 99577724 99577834 -118459324 + L2 LINE L2 3187 3310 -3 4684 250 42 22 chr3 99577996 99578226 -118458932 + L1M4 LINE L1 2960 3184 -2962 1851 142 23 19 chr3 99578226 99578536 -118458622 + AluSx SINE Alu 1 311 -1 4684 250 42 22 chr3 99578536 99579904 -118457254 + L1M4 LINE L1 3184 4589 -1557 329 270 34 0 chr3 99579911 99580000 -118457158 + L1MA10 LINE L1 6175 6266 -68 3078 160 22 33 chr3 99580188 99580868 -118456290 + SVA Other Other 758 1430 0 464 345 41 81 chr3 99581830 99581856 -118455302 + L2 LINE L2 2499 2525 -789 1725 160 35 27 chr3 99581856 99582225 -118454933 + THE1C LTR MaLR 1 372 -3 464 345 41 81 chr3 99582225 99582691 -118454467 + L2 LINE L2 2525 2971 -343 22 56 0 0 chr3 99584026 99584062 -118453096 + AT_rich Low_complexity Low_complexity 1 36 0 2282 143 10 15 chr3 99584172 99584570 -118452588 + MER61B LTR ERV1 1 396 -29 192 77 0 0 chr3 99584578 99584604 -118452554 + (TCTA)n Simple_repeat Simple_repeat 3 28 0 21 36 0 0 chr3 99585441 99585469 -118451689 + AT_rich Low_complexity Low_complexity 1 28 0 270 228 59 21 chr3 99585531 99585642 -118451516 - L1ME LINE L1 -330 5791 5675 237 65 0 0 chr3 99586353 99586384 -118450774 + (CA)n Simple_repeat Simple_repeat 2 32 0 219 164 18 36 chr3 99586384 99586439 -118450719 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 21 71 0 0 chr3 99587156 99587198 -118449960 + AT_rich Low_complexity Low_complexity 1 42 0 393 303 56 43 chr3 99588169 99588331 -118448827 + MIR SINE MIR 22 185 -77 332 240 125 0 chr3 99588523 99588619 -118448539 - MIR SINE MIR -51 211 104 472 286 6 35 chr3 99589569 99589740 -118447418 + L2 LINE L2 2317 2482 -832 28 61 0 0 chr3 99589895 99589944 -118447214 + AT_rich Low_complexity Low_complexity 1 49 0 835 184 7 0 chr3 99590866 99591025 -118446133 - AluJb SINE Alu 0 307 148 1262 261 67 71 chr3 99592706 99593301 -118443857 + MLT1E LTR MaLR 1 593 0 512 142 0 47 chr3 99593384 99593490 -118443668 + L1MB3 LINE L1 5574 5674 -509 2549 171 40 4 chr3 99595986 99596466 -118440692 + L1MB3 LINE L1 5662 6158 -25 269 118 20 0 chr3 99596468 99596519 -118440639 + (TA)n Simple_repeat Simple_repeat 2 53 0 1798 138 0 15 chr3 99596534 99596803 -118440355 - AluSx SINE Alu -47 265 1 27 0 0 0 chr3 99598870 99598897 -118438261 + AT_rich Low_complexity Low_complexity 1 27 0 254 304 130 10 chr3 99599895 99600080 -118437078 - L2 LINE L2 -1362 1952 1738 1719 173 46 30 chr3 99600080 99600449 -118436709 + THE1C LTR MaLR 1 375 0 254 304 130 10 chr3 99600449 99600470 -118436688 - L2 LINE L2 -1576 1738 1721 28 0 0 0 chr3 99602970 99602998 -118434160 + AT_rich Low_complexity Low_complexity 1 28 0 1305 164 109 7 chr3 99603598 99603872 -118433286 - AluJo SINE Alu -8 304 3 220 322 52 17 chr3 99603902 99604017 -118433141 - L2 LINE L2 -594 2720 2602 1573 229 16 21 chr3 99604548 99604967 -118432191 - MER63 DNA MER1_type 0 1060 644 751 285 42 0 chr3 99604967 99605181 -118431977 + MER58A DNA MER1_type 2 224 0 526 198 25 0 chr3 99605186 99605307 -118431851 - MER63 DNA MER1_type -411 650 527 210 295 21 42 chr3 99605536 99605631 -118431527 - L2 LINE L2 -4 3268 3176 393 224 0 0 chr3 99605997 99606122 -118431036 + GA-rich Low_complexity Low_complexity 2 126 0 216 288 128 24 chr3 99608405 99608530 -118428628 + MIR SINE MIR 125 262 0 6762 36 0 13 chr3 99608986 99609815 -118427343 - L1PA4 LINE L1 0 6155 5338 213 39 0 0 chr3 99611172 99611198 -118425960 + (TA)n Simple_repeat Simple_repeat 2 27 0 320 259 35 9 chr3 99611230 99611346 -118425812 + L1P LINE L1 5289 5407 -767 929 191 143 0 chr3 99611354 99611543 -118425615 + AluJb SINE Alu 81 296 -16 342 315 6 28 chr3 99611543 99611721 -118425437 + L1ME LINE L1 5411 5584 -586 2494 70 0 0 chr3 99611739 99612041 -118425117 - AluY SINE Alu -9 302 1 2017 132 7 3 chr3 99612207 99612503 -118424655 - AluSp SINE Alu -12 301 5 484 204 51 22 chr3 99612597 99612734 -118424424 + L1ME3A LINE L1 6030 6170 0 243 284 90 62 chr3 99613511 99613912 -118423246 + L1M4 LINE L1 3898 4309 -1837 606 272 86 11 chr3 99614226 99614505 -118422653 + L1ME LINE L1 2531 2830 -3316 1500 283 56 29 chr3 99614548 99614862 -118422296 + L1ME LINE L1 2951 3255 -2891 2190 129 0 0 chr3 99614862 99615171 -118421987 + AluSx SINE Alu 1 309 -3 1500 283 56 29 chr3 99615171 99615557 -118421601 + L1ME LINE L1 3255 3629 -2517 457 67 0 0 chr3 99615557 99615617 -118421541 + (TTTTA)n Simple_repeat Simple_repeat 2 90 0 2008 118 4 4 chr3 99615617 99615897 -118421261 - AluSx SINE Alu -1 341 3 1500 283 56 29 chr3 99615897 99616011 -118421147 + L1ME LINE L1 3628 3789 -2357 1041 225 85 29 chr3 99616010 99616352 -118420806 + L1MD3 LINE L1 7556 7916 -79 * 651 268 28 20 chr3 99616399 99616649 -118420509 + L1ME LINE L1 4697 4948 -1198 5211 181 43 12 chr3 99616655 99618453 -118418705 + L1MA9 LINE L1 4180 6029 -283 1022 155 36 18 chr3 99618456 99618675 -118418483 + L1MA9 LINE L1 6090 6312 0 1997 233 44 7 chr3 99618678 99619514 -118417644 + L1ME LINE L1 4935 5798 -368 21 0 0 0 chr3 99621722 99621743 -118415415 + AT_rich Low_complexity Low_complexity 1 21 0 895 177 5 0 chr3 99621952 99622138 -118415020 + L1MA9 LINE L1 5254 5440 -728 806 130 8 8 chr3 99622137 99622268 -118414890 - L1MA7 LINE L1 -358 5933 5803 * 309 81 65 0 chr3 99622268 99622327 -118414831 + L1MA7 LINE L1 6225 6290 -1 2561 228 42 87 chr3 99622364 99623240 -118413918 + L1MA9 LINE L1 5438 6274 -38 25 0 0 0 chr3 99623240 99623265 -118413893 + AT_rich Low_complexity Low_complexity 1 25 0 1898 124 4 7 chr3 99623265 99623539 -118413619 + AluSx SINE Alu 1 273 -39 180 0 0 0 chr3 99623539 99623559 -118413599 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 189 0 0 0 chr3 99623558 99623579 -118413579 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 315 0 0 0 chr3 99623578 99623613 -118413545 + (TG)n Simple_repeat Simple_repeat 2 36 0 220 197 15 15 chr3 99624330 99624396 -118412762 + GA-rich Low_complexity Low_complexity 4 69 0 224 262 19 39 chr3 99625025 99625128 -118412030 + (CAGAGA)n Simple_repeat Simple_repeat 4 104 0 325 294 118 48 chr3 99625890 99626118 -118411040 - L1ME LINE L1 -390 5731 5488 323 310 57 19 chr3 99626206 99626364 -118410794 - L1ME LINE L1 -771 5375 5212 1806 114 99 4 chr3 99627046 99627499 -118409659 + AluSg SINE Alu 1 479 0 1137 78 11 11 chr3 99627319 99627556 -118409602 + (GAAA)n Simple_repeat Simple_repeat 1 237 0 1200 189 38 13 chr3 99627632 99627870 -118409288 + AluJo SINE Alu 52 295 -17 1550 152 24 71 chr3 99627967 99628264 -118408894 - AluSx SINE Alu -6 306 24 25 51 0 0 chr3 99629435 99629474 -118407684 + AT_rich Low_complexity Low_complexity 1 39 0 35 24 0 0 chr3 99630517 99630559 -118406599 + AT_rich Low_complexity Low_complexity 1 42 0 617 344 27 5 chr3 99630682 99630903 -118406255 + MIR SINE MIR 37 262 0 427 264 0 16 chr3 99631096 99631217 -118405941 + FLAM_A SINE Alu 1 119 -14 367 342 34 0 chr3 99632099 99632216 -118404942 - MIR3 SINE MIR -17 191 71 301 241 51 0 chr3 99632234 99632313 -118404845 - MER94 DNA DNA -51 83 1 2257 105 0 0 chr3 99632453 99632749 -118404409 - AluSc SINE Alu -13 296 1 2877 190 88 14 chr3 99633308 99633966 -118403192 - MER39 LTR ERV1 0 707 1 217 309 88 55 chr3 99634148 99634329 -118402829 + MIR SINE MIR 19 205 -57 21 0 0 0 chr3 99635293 99635314 -118401844 + AT_rich Low_complexity Low_complexity 1 21 0 262 178 30 50 chr3 99635625 99635726 -118401432 + CT-rich Low_complexity Low_complexity 4 102 0 213 219 94 0 chr3 99635741 99635837 -118401321 + (TA)n Simple_repeat Simple_repeat 2 106 0 384 280 50 78 chr3 99636149 99636431 -118400727 - MLT1L LTR MaLR -175 440 167 21 36 0 0 chr3 99638319 99638347 -118398811 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 99639409 99639430 -118397728 + AT_rich Low_complexity Low_complexity 1 21 0 2031 105 0 3 chr3 99639441 99639735 -118397423 - L1PB1 LINE L1 -3 6148 5856 756 60 8 60 chr3 99639746 99639863 -118397295 - HY1 scRNA scRNA -1 111 1 346 306 27 66 chr3 99640024 99640207 -118396951 - HAL1 LINE L1 -932 1575 1400 233 277 98 9 chr3 99640377 99640489 -118396669 - HAL1 LINE L1 -1230 1277 1156 227 247 0 55 chr3 99640769 99640842 -118396316 - HAL1 LINE L1 -1476 1031 963 2281 72 0 28 chr3 99640993 99641313 -118395845 + AluY SINE Alu 1 311 0 254 346 28 0 chr3 99642212 99642319 -118394839 - MIR3 SINE MIR -20 188 79 1015 117 31 12 chr3 99642431 99642593 -118394565 - THE1C LTR MaLR -210 165 1 9617 116 38 46 chr3 99642593 99644185 -118392973 - THE1C-int LTR MaLR 0 1580 1 2375 133 5 11 chr3 99644187 99644562 -118392596 - THE1C LTR MaLR -2 373 1 375 283 40 0 chr3 99644604 99644703 -118392455 - MER5A DNA MER1_type -77 112 10 195 186 0 0 chr3 99645351 99645394 -118391764 + (CTA)n Simple_repeat Simple_repeat 3 45 0 21 36 0 0 chr3 99645580 99645608 -118391550 + AT_rich Low_complexity Low_complexity 1 28 0 1182 139 99 81 chr3 99646280 99646553 -118390605 - THE1B LTR MaLR -86 278 1 246 241 118 89 chr3 99646559 99646940 -118390218 - L1MC5 LINE L1 -300 7661 7270 1888 137 11 0 chr3 99647748 99648032 -118389126 - AluSx SINE Alu -20 292 6 314 269 104 57 chr3 99648816 99649028 -118388130 + L1ME LINE L1 5595 5816 -305 31 68 0 0 chr3 99649028 99649087 -118388071 + AT_rich Low_complexity Low_complexity 1 59 0 800 180 42 74 chr3 99649190 99649407 -118387751 - L1MA9 LINE L1 -39 6273 6064 2150 171 38 9 chr3 99650568 99650988 -118386170 - MSTB1 LTR MaLR 0 432 1 1945 118 16 26 chr3 99651126 99651431 -118385727 - AluSq SINE Alu -11 302 1 1962 261 49 45 chr3 99651431 99651488 -118385670 - L1MEc LINE L1 -5495 901 846 183 42 0 0 chr3 99651488 99651512 -118385646 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1962 261 49 45 chr3 99651512 99651676 -118385482 - L1MEc LINE L1 -5550 846 684 1821 145 24 0 chr3 99651676 99651966 -118385192 + AluSx SINE Alu 1 297 -15 1962 261 49 45 chr3 99651966 99651978 -118385180 - L1MEc LINE L1 -5712 684 674 2316 75 7 0 chr3 99651978 99652272 -118384886 + AluY SINE Alu 1 296 -15 1962 261 49 45 chr3 99652272 99652733 -118384425 - L1MEc LINE L1 -5722 674 202 4568 214 12 11 chr3 99652833 99653867 -118383291 + L1 LINE L1 3429 4463 -1683 852 235 30 11 chr3 99653861 99654125 -118383033 + L1 LINE L1 4797 5065 -1081 * 4040 200 2 21 chr3 99654240 99654788 -118382370 + L1 LINE L1 2379 2905 -3241 2070 108 10 7 chr3 99654788 99655085 -118382073 - AluSx SINE Alu -13 299 2 4040 200 2 21 chr3 99655085 99655436 -118381722 + L1 LINE L1 2905 3261 -2885 265 323 141 45 chr3 99657365 99657783 -118379375 + L2 LINE L2 2169 2626 -688 1722 167 121 34 chr3 99657784 99658295 -118378863 + MLT2A2 LTR ERVL 1 554 0 239 366 98 34 chr3 99658608 99658843 -118378315 + L2 LINE L2 2834 3083 -189 532 221 0 8 chr3 99659079 99659210 -118377948 - L1MA10 LINE L1 -2 6332 6203 510 281 17 22 chr3 99659237 99659415 -118377743 - L1ME1 LINE L1 -135 6031 5855 288 212 12 12 chr3 99659431 99659516 -118377642 - L1ME1 LINE L1 -295 5871 5787 * 470 181 9 0 chr3 99659495 99659611 -118377547 - L1M4 LINE L1 -3185 2961 2845 312 343 39 0 chr3 99659647 99659820 -118377338 - HERVL LTR ERVL -3419 1577 1394 270 81 0 0 chr3 99659855 99659892 -118377266 + (CA)n Simple_repeat Simple_repeat 2 38 0 6158 176 66 10 chr3 99660032 99662289 -118374869 + L1PBa LINE L1 1798 4180 -2682 244 307 80 29 chr3 99663601 99663738 -118373420 + MIR SINE MIR 2 145 -63 244 307 80 29 chr3 99665366 99665503 -118371655 + MIR SINE MIR 2 145 -63 354 300 18 36 chr3 99666655 99666765 -118370393 - L2 LINE L2 -8 3305 3198 21 36 0 0 chr3 99666861 99666889 -118370269 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr3 99667322 99667346 -118369812 + AT_rich Low_complexity Low_complexity 1 24 0 2033 123 7 7 chr3 99667352 99667645 -118369513 + AluSx SINE Alu 1 293 -19 30 0 0 0 chr3 99668110 99668140 -118369018 + AT_rich Low_complexity Low_complexity 1 30 0 24 67 0 0 chr3 99668494 99668539 -118368619 + AT_rich Low_complexity Low_complexity 1 45 0 633 238 6 31 chr3 99668915 99669075 -118368083 + MER5B DNA MER1_type 1 156 -22 2689 110 11 0 chr3 99669394 99669776 -118367382 + L1PA15 LINE L1 5587 5972 -193 3349 130 24 6 chr3 99669781 99670288 -118366870 - MER1A DNA MER1_type -13 516 1 679 156 7 15 chr3 99670288 99670423 -118366735 + L1PA15 LINE L1 6031 6164 -1 27 0 0 0 chr3 99670430 99670457 -118366701 + AT_rich Low_complexity Low_complexity 1 27 0 261 119 0 0 chr3 99670589 99670631 -118366527 + (CA)n Simple_repeat Simple_repeat 2 43 0 292 338 65 13 chr3 99671281 99671435 -118365723 + L3 LINE CR1 1262 1423 -154 40 37 0 0 chr3 99672032 99672086 -118365072 + AT_rich Low_complexity Low_complexity 1 54 0 2185 103 3 6 chr3 99672769 99673080 -118364078 - AluSx SINE Alu -2 310 1 210 269 45 0 chr3 99673367 99673434 -118363724 + MIR SINE MIR 161 230 -32 180 0 0 0 chr3 99674027 99674047 -118363111 + (TG)n Simple_repeat Simple_repeat 1 20 0 2108 122 0 0 chr3 99674493 99674797 -118362361 + AluSc SINE Alu 6 309 0 339 345 112 29 chr3 99674797 99675171 -118361987 - L1ME LINE L1 -427 5694 5290 201 74 0 0 chr3 99675434 99675461 -118361697 + (CA)n Simple_repeat Simple_repeat 1 27 0 687 312 107 10 chr3 99675517 99675918 -118361240 - L1MC4 LINE L1 -188 7854 7415 1439 216 50 24 chr3 99676133 99676471 -118360687 + MER7A DNA MER2_type 2 346 0 21 0 0 0 chr3 99676873 99676894 -118360264 + AT_rich Low_complexity Low_complexity 1 21 0 1181 206 53 45 chr3 99677061 99677440 -118359718 - Charlie5 DNA MER1_type 0 2624 2243 587 51 13 0 chr3 99677648 99677727 -118359431 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 32 26 0 0 chr3 99680995 99681034 -118356124 + AT_rich Low_complexity Low_complexity 1 39 0 2017 128 4 0 chr3 99681040 99681353 -118355805 + AluSx SINE Alu 1 314 0 180 0 0 0 chr3 99681750 99681770 -118355388 + (T)n Simple_repeat Simple_repeat 1 20 0 473 304 6 44 chr3 99683013 99683171 -118353987 - MIR3 SINE MIR -3 205 54 880 326 104 16 chr3 99683321 99683772 -118353386 - LTR33 LTR ERVL 0 521 31 2491 166 18 25 chr3 99683773 99684261 -118352897 - MER31A LTR ERV1 0 485 1 401 313 60 0 chr3 99685318 99685468 -118351690 + MIR SINE MIR 104 262 0 545 316 78 32 chr3 99686527 99686862 -118350296 - L1ME LINE L1 -393 5769 5427 261 0 0 0 chr3 99688865 99688894 -118348264 + (T)n Simple_repeat Simple_repeat 1 29 0 4657 93 41 33 chr3 99688894 99690038 -118347120 - SVA Other Other -955 1386 2 214 178 0 55 chr3 99691152 99691200 -118345958 + (TAAA)n Simple_repeat Simple_repeat 1 45 -24 1584 165 10 26 chr3 99691200 99691509 -118345649 + AluJo SINE Alu 1 304 -8 214 178 0 55 chr3 99691509 99691533 -118345625 + (TAAA)n Simple_repeat Simple_repeat 45 69 0 502 303 100 42 chr3 99692052 99692293 -118344865 - MIR SINE MIR -5 257 3 340 287 0 21 chr3 99692343 99692437 -118344721 + L2 LINE L2 3222 3313 0 305 311 86 33 chr3 99693052 99693203 -118343955 + L2 LINE L2 2892 3050 -222 1784 131 73 0 chr3 99693427 99693702 -118343456 + AluSq SINE Alu 1 295 -18 425 19 19 0 chr3 99693705 99693759 -118343399 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 289 315 75 20 chr3 99693814 99693960 -118343198 - L2 LINE L2 -205 3067 2914 23 78 0 0 chr3 99694293 99694344 -118342814 + AT_rich Low_complexity Low_complexity 1 51 0 26 30 0 0 chr3 99695667 99695700 -118341458 + AT_rich Low_complexity Low_complexity 1 33 0 1254 214 0 0 chr3 99695969 99696207 -118340951 + AluJo SINE Alu 14 251 -61 191 252 78 58 chr3 99696816 99696919 -118340239 + L3 LINE CR1 942 1046 -531 6825 121 9 10 chr3 99697057 99698126 -118339032 + L1PA8A LINE L1 3554 4621 -1525 6364 87 3 1 chr3 99698226 99699545 -118337613 + L1PA8A LINE L1 4804 6131 0 21 0 0 0 chr3 99699676 99699697 -118337461 + AT_rich Low_complexity Low_complexity 1 21 0 864 265 71 11 chr3 99700138 99700421 -118336737 - LTR16A1 LTR ERVL 0 457 158 3607 213 106 13 chr3 99703274 99704366 -118332792 + Charlie5 DNA MER1_type 1 1194 -1418 524 190 11 86 chr3 99704365 99704539 -118332619 + Charlie5 DNA MER1_type 2464 2624 0 * 339 214 68 39 chr3 99704543 99704646 -118332512 + L2 LINE L2 3191 3296 -17 270 286 13 0 chr3 99704738 99704815 -118332343 + CT-rich Low_complexity Low_complexity 1 78 0 22 0 0 0 chr3 99705009 99705031 -118332127 + AT_rich Low_complexity Low_complexity 1 22 0 203 77 0 0 chr3 99705179 99705205 -118331953 + (T)n Simple_repeat Simple_repeat 1 26 0 225 94 0 0 chr3 99705818 99705850 -118331308 + (TCCCC)n Simple_repeat Simple_repeat 2 33 0 23 33 0 0 chr3 99705916 99705946 -118331212 + GC_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 99706065 99706086 -118331072 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr3 99706235 99706262 -118330896 + (T)n Simple_repeat Simple_repeat 1 27 0 973 307 221 36 chr3 99706308 99707207 -118329951 + L2 LINE L2 77 1142 -2172 333 265 104 91 chr3 99707211 99707441 -118329717 + L2 LINE L2 2201 2433 -881 584 291 65 0 chr3 99708543 99708742 -118328416 - MIR SINE MIR -2 260 49 1926 272 136 51 chr3 99708795 99709946 -118327212 + L1MC3 LINE L1 5480 6728 -1057 3304 155 20 2 chr3 99710107 99710851 -118326307 + L1PB1 LINE L1 5036 5792 -359 402 170 0 0 chr3 99710856 99710950 -118326208 + (TA)n Simple_repeat Simple_repeat 1 94 0 2343 124 0 0 chr3 99710963 99711317 -118325841 + L1PB1 LINE L1 5791 6144 -7 3359 216 11 19 chr3 99711333 99712166 -118324992 + L1PA8A LINE L1 3038 3863 -2283 1706 143 56 80 chr3 99712166 99712359 -118324799 + THE1C LTR MaLR 1 182 -193 2217 114 3 0 chr3 99712359 99712666 -118324492 + AluSp SINE Alu 1 308 -5 1706 143 56 80 chr3 99712666 99712849 -118324309 + THE1C LTR MaLR 182 368 -7 5927 221 50 8 chr3 99712850 99715028 -118322130 + L1PA8A LINE L1 3859 6130 -1 475 317 108 37 chr3 99715101 99715676 -118321482 + L1MB5 LINE L1 5268 5885 -289 1559 243 99 24 chr3 99716380 99716846 -118320312 - MLT1D LTR MaLR -3 502 2 337 330 31 0 chr3 99717625 99717722 -118319436 + L2 LINE L2 3173 3272 0 23 0 0 0 chr3 99718154 99718177 -118318981 + AT_rich Low_complexity Low_complexity 1 23 0 255 330 11 0 chr3 99718323 99718414 -118318744 - L2 LINE L2 -14 3299 3208 21 82 0 0 chr3 99719526 99719575 -118317583 + AT_rich Low_complexity Low_complexity 1 49 0 659 383 36 39 chr3 99720229 99720832 -118316326 + L2 LINE L2 2453 3092 -180 2533 20 10 3 chr3 99720832 99721134 -118316024 + AluY SINE Alu 1 304 -7 659 383 36 39 chr3 99721134 99721307 -118315851 + L2 LINE L2 3092 3264 -8 1600 238 157 12 chr3 99721333 99722077 -118315081 + L1MC/D LINE L1 4343 5194 -952 1201 117 15 10 chr3 99722191 99722388 -118314770 - L1PA14 LINE L1 -3 6158 5961 774 236 101 69 chr3 99722399 99722562 -118314596 + L1MC/D LINE L1 5254 5410 -770 2115 122 0 3 chr3 99722562 99722858 -118314300 + AluSq SINE Alu 1 295 -18 774 236 101 69 chr3 99722858 99723068 -118314090 + L1MC/D LINE L1 5410 5631 -549 1116 347 109 52 chr3 99723117 99725919 -118311239 + L2 LINE L2 319 3272 0 445 289 102 6 chr3 99726110 99726276 -118310882 - MIR SINE MIR -71 191 10 1434 268 27 97 chr3 99727477 99728331 -118308827 + L2 LINE L2 2513 3313 0 1473 185 4 8 chr3 99729235 99729489 -118307669 + AluJo SINE Alu 29 281 -31 2072 112 0 30 chr3 99729765 99730070 -118307088 + AluSc SINE Alu 1 296 -13 2405 300 100 71 chr3 99730227 99730808 -118306350 + L2 LINE L2 601 1164 -2149 2205 113 0 3 chr3 99730808 99731110 -118306048 + AluSq SINE Alu 1 301 -12 2405 300 100 71 chr3 99731110 99733140 -118304018 + L2 LINE L2 1164 3287 -26 2287 75 3 25 chr3 99733269 99733587 -118303571 + AluY SINE Alu 1 311 0 314 326 40 18 chr3 99733742 99733968 -118303190 - MIR SINE MIR -16 246 17 213 193 12 24 chr3 99734100 99734183 -118302975 + GA-rich Low_complexity Low_complexity 3 84 0 189 372 53 0 chr3 99734201 99734295 -118302863 - MIR SINE MIR -88 120 22 602 242 7 0 chr3 99735290 99735443 -118301715 - L1MA10 LINE L1 -7 6327 6174 21 36 0 0 chr3 99736671 99736699 -118300459 + AT_rich Low_complexity Low_complexity 1 28 0 31 76 0 0 chr3 99736742 99736808 -118300350 + AT_rich Low_complexity Low_complexity 1 66 0 859 221 54 29 chr3 99738600 99738804 -118298354 - MER3 DNA MER1_type 0 209 1 531 296 87 20 chr3 99739435 99739631 -118297527 + MIR SINE MIR 54 262 0 473 384 109 27 chr3 99739778 99740448 -118296710 - L2 LINE L2 -721 2593 1869 290 218 10 109 chr3 99740850 99740951 -118296207 - L2 LINE L2 0 3313 3223 21 0 0 0 chr3 99741099 99741120 -118296038 + AT_rich Low_complexity Low_complexity 1 21 0 645 314 23 0 chr3 99742742 99742962 -118294196 + L2 LINE L2 2156 2380 -934 540 324 17 0 chr3 99742972 99743148 -118294010 + L2 LINE L2 2519 2697 -617 3075 268 57 41 chr3 99743148 99744899 -118292259 - L1MEc LINE L1 -2542 3673 1921 364 96 0 0 chr3 99744903 99744955 -118292203 - MADE1 DNA Mariner 0 80 29 7253 46 5 2 chr3 99745837 99746971 -118290187 + L1PA5 LINE L1 5017 6152 -2 446 313 159 10 chr3 99747335 99747543 -118289615 - MIR SINE MIR -17 245 7 317 290 153 0 chr3 99747975 99748099 -118289059 + MIR SINE MIR 117 259 -3 405 302 62 16 chr3 99748130 99748322 -118288836 + HsTC2 DNA Tc2 288 488 -1410 468 84 0 0 chr3 99748414 99748485 -118288673 + L1MA3 LINE L1 6235 6305 0 1692 133 15 8 chr3 99748512 99748775 -118288383 + AluJb SINE Alu 40 304 -8 1567 206 68 15 chr3 99748850 99749248 -118287910 + MLT1C LTR MaLR 48 466 -1 469 248 82 37 chr3 99749444 99749619 -118287539 - L1ME LINE L1 -4292 1969 1774 447 47 0 245 chr3 99749619 99749725 -118287433 - MADE1 DNA Mariner 0 80 1 469 248 82 37 chr3 99749725 99749843 -118287315 - L1ME LINE L1 -4487 1774 1663 1611 273 60 51 chr3 99749923 99750823 -118286335 - L1ME LINE L1 -4677 1405 498 1361 211 20 89 chr3 99750840 99751233 -118285925 - MLT1A2 LTR MaLR -8 366 1 244 79 26 0 chr3 99751235 99751273 -118285885 + MER65A LTR ERV1 1 39 -406 589 109 10 10 chr3 99751286 99751387 -118285771 + (GAAA)n Simple_repeat Simple_repeat 3 103 0 2012 174 12 44 chr3 99751387 99751794 -118285364 + MER65A LTR ERV1 52 445 0 341 353 92 36 chr3 99751948 99752285 -118284873 - L1ME LINE L1 -5597 473 118 373 296 9 0 chr3 99752474 99752597 -118284561 - L1ME LINE L1 -5907 163 40 267 379 40 0 chr3 99752657 99752781 -118284377 + L2 LINE L2 2760 2888 -426 891 308 97 15 chr3 99753367 99753770 -118283388 + L2 LINE L2 2876 3311 -2 2135 119 36 28 chr3 99754826 99755187 -118281971 + THE1B LTR MaLR 1 364 0 538 245 86 82 chr3 99756810 99757067 -118280091 + MIR SINE MIR 2 259 -3 26 50 0 0 chr3 99757396 99757436 -118279722 + AT_rich Low_complexity Low_complexity 1 40 0 452 179 0 0 chr3 99757499 99757577 -118279581 - MER115 DNA AcHobo -9 684 607 2846 267 61 40 chr3 99757586 99758708 -118278450 + L1MEc LINE L1 38 1182 -5214 4363 250 23 23 chr3 99758724 99760150 -118277008 + L1M1 LINE L1 154 2451 -5114 642 179 7 14 chr3 99760265 99760410 -118276748 + L1MA4 LINE L1 6156 6299 -1 767 219 71 39 chr3 99760483 99760793 -118276365 + L1M1 LINE L1 4066 4385 -3180 381 289 82 46 chr3 99762000 99762095 -118275063 - MIR SINE MIR -49 213 123 1904 187 94 0 chr3 99762095 99762490 -118274668 - MSTB1 LTR MaLR 0 432 1 381 289 82 46 chr3 99762490 99762588 -118274570 - MIR SINE MIR -139 123 13 240 197 82 16 chr3 99762721 99762782 -118274376 - MLT1I LTR MaLR -4 405 341 246 239 60 94 chr3 99763024 99763141 -118274017 + L2 LINE L2 3201 3313 0 991 183 0 6 chr3 99763600 99763775 -118273383 + AluJb SINE Alu 122 295 -17 231 36 0 0 chr3 99764115 99764143 -118273015 + (TAGA)n Simple_repeat Simple_repeat 2 29 0 246 252 177 43 chr3 99764697 99764951 -118272207 + HAL1b LINE L1 1222 6121 0 4859 122 4 12 chr3 99766454 99767218 -118269940 + L1PB2 LINE L1 5392 6149 -2 26 0 0 0 chr3 99767221 99767247 -118269911 + AT_rich Low_complexity Low_complexity 1 26 0 13822 134 38 16 chr3 99768605 99770970 -118266188 - Tigger1 DNA MER2_type 0 2418 1 26 0 0 0 chr3 99771353 99771379 -118265779 + AT_rich Low_complexity Low_complexity 1 26 0 463 139 26 52 chr3 99771986 99772101 -118265057 - MER3 DNA MER1_type -81 128 64 2049 185 12 5 chr3 99772364 99772764 -118264394 - MER57A LTR ERV1 0 403 1 3328 165 36 3 chr3 99775322 99775964 -118261194 + L1MA4 LINE L1 5636 6298 -2 31 0 0 0 chr3 99775964 99775995 -118261163 + AT_rich Low_complexity Low_complexity 1 31 0 1040 290 157 11 chr3 99776980 99777421 -118259737 + L2 LINE L2 1602 2106 -1208 1438 245 56 20 chr3 99777454 99778068 -118259090 - L1ME LINE L1 -4680 1400 767 1363 146 80 0 chr3 99778072 99778285 -118258873 + THE1B LTR MaLR 1 230 -134 9471 120 43 26 chr3 99778286 99779791 -118257367 + THE1B-int LTR MaLR 50 1580 0 2431 123 19 6 chr3 99779791 99780150 -118257008 + THE1B LTR MaLR 1 364 0 1573 280 95 14 chr3 99780150 99780821 -118256337 - L1ME LINE L1 -5322 748 43 1643 286 113 18 chr3 99780896 99781636 -118255522 + L2 LINE L2 2304 3096 -217 1457 229 0 10 chr3 99782186 99782487 -118254671 - AluJo SINE Alu -14 298 1 1723 136 158 78 chr3 99782919 99783293 -118253865 - MER4A LTR ERV1 0 664 261 581 116 32 11 chr3 99783294 99783389 -118253769 - MER4A LTR ERV1 -567 97 1 24 0 0 0 chr3 99784134 99784158 -118253000 + AT_rich Low_complexity Low_complexity 1 24 0 275 328 83 62 chr3 99784227 99784480 -118252678 + L2 LINE L2 3017 3278 -35 2238 155 53 17 chr3 99784480 99784893 -118252265 + MSTA LTR MaLR 1 428 0 275 328 83 62 chr3 99784893 99784929 -118252229 + L2 LINE L2 3278 3312 -1 824 105 8 0 chr3 99785419 99785543 -118251615 - L1PA12 LINE L1 0 6168 6044 1842 147 18 0 chr3 99785949 99786228 -118250930 + AluSx SINE Alu 3 286 -26 1009 172 39 79 chr3 99786415 99786694 -118250464 - L1MA4 LINE L1 -19 6281 6014 2308 78 0 43 chr3 99787624 99787946 -118249212 - AluY SINE Alu -3 308 1 21 36 0 0 chr3 99788106 99788134 -118249024 + AT_rich Low_complexity Low_complexity 1 28 0 181 83 56 0 chr3 99788272 99788308 -118248850 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 5373 22 0 0 chr3 99789545 99790169 -118246989 + L1PA2 LINE L1 5532 6155 0 249 266 133 5 chr3 99791559 99791699 -118245459 - MIR SINE MIR -32 176 10 362 239 106 9 chr3 99794435 99794548 -118242610 - MIR3 SINE MIR -2 206 83 1928 128 13 13 chr3 99795334 99795632 -118241526 + AluSx SINE Alu 3 300 -12 2639 37 0 0 chr3 99795877 99796175 -118240983 - AluY SINE Alu -13 298 1 446 211 11 0 chr3 99797693 99797783 -118239375 - Tigger7 DNA MER2_type 0 2487 2397 2682 204 42 8 chr3 99797785 99798314 -118238844 - Tigger7 DNA MER2_type -1940 547 1 1713 156 132 27 chr3 99798681 99799084 -118238074 + MER65A LTR ERV1 1 445 0 25 31 0 0 chr3 99800004 99800036 -118237122 + AT_rich Low_complexity Low_complexity 1 32 0 458 301 59 0 chr3 99800036 99800275 -118236883 + L1ME3A LINE L1 5698 5950 -220 996 297 125 43 chr3 99800715 99801466 -118235692 + HAL1 LINE L1 387 1234 -1273 2587 102 13 8 chr3 99801466 99801839 -118235319 - THE1C LTR MaLR 0 375 1 996 297 125 43 chr3 99801839 99802037 -118235121 + HAL1 LINE L1 1234 1414 -1093 255 278 0 0 chr3 99802370 99802496 -118234662 + (CA)n Simple_repeat Simple_repeat 2 127 0 248 305 12 0 chr3 99802511 99802593 -118234565 + (CA)n Simple_repeat Simple_repeat 2 84 0 287 271 0 6 chr3 99802606 99802776 -118234382 + (CA)n Simple_repeat Simple_repeat 2 170 0 2505 52 0 3 chr3 99804732 99805038 -118232120 - AluY SINE Alu -5 306 2 449 372 9 14 chr3 99805315 99805530 -118231628 - MIR SINE MIR 0 262 49 1424 172 30 42 chr3 99805769 99806102 -118231056 - MER33 DNA MER1_type -1 323 1 2198 122 6 3 chr3 99806336 99806648 -118230510 - AluSq SINE Alu 0 313 1 1901 161 0 0 chr3 99809002 99809294 -118227864 - AluJb SINE Alu -20 292 1 395 104 79 3 chr3 99809808 99810136 -118227022 + (TA)n Simple_repeat Simple_repeat 1 352 0 25 31 0 0 chr3 99810286 99810318 -118226840 + AT_rich Low_complexity Low_complexity 1 32 0 246 296 14 21 chr3 99810424 99810566 -118226592 - L1M4 LINE L1 -1906 4240 4100 308 265 92 54 chr3 99810580 99810765 -118226393 - MLT1H1 LTR MaLR -6 561 370 445 265 140 25 chr3 99810861 99811061 -118226097 - MLT1H1 LTR MaLR -323 232 10 4251 70 23 29 chr3 99811579 99812192 -118224966 - L1PA7 LINE L1 -4 6150 5542 1644 196 47 12 chr3 99812192 99812719 -118224439 - L1M2 LINE L1 -675 5616 5075 2550 230 127 18 chr3 99812910 99813836 -118223322 + L1MC4a LINE L1 6782 7808 0 314 279 58 0 chr3 99814607 99814711 -118222447 + L1MC4a LINE L1 4251 4360 -1786 26 0 0 0 chr3 99814814 99814840 -118222318 + AT_rich Low_complexity Low_complexity 1 26 0 269 220 68 23 chr3 99815025 99815177 -118221981 + L1P LINE L1 4787 4948 -1198 301 261 77 31 chr3 99815454 99815584 -118221574 + L1MC4a LINE L1 5299 5434 -2374 846 298 60 0 chr3 99815622 99815988 -118221170 + L1MC4a LINE L1 5510 5897 -1911 283 316 26 62 chr3 99815990 99816183 -118220975 - L2 LINE L2 -24 3289 3104 2302 67 19 6 chr3 99816674 99816987 -118220171 + L1PA7 LINE L1 5836 6152 -2 226 224 0 0 chr3 99818054 99818103 -118219055 + CT-rich Low_complexity Low_complexity 1 49 0 25 31 0 0 chr3 99818103 99818135 -118219023 + AT_rich Low_complexity Low_complexity 1 32 0 389 278 69 102 chr3 99818237 99818474 -118218684 + L2 LINE L2 1699 1921 -1393 928 75 45 0 chr3 99818474 99818607 -118218551 + MER85 DNA T2_type 1 139 0 389 278 69 102 chr3 99818607 99818732 -118218426 + L2 LINE L2 1921 2049 -1265 530 301 121 47 chr3 99818742 99819171 -118217987 - MLT1J LTR MaLR -24 487 27 551 294 5 64 chr3 99819307 99819525 -118217633 + MIR SINE MIR 37 241 -21 999 357 106 39 chr3 99819828 99821334 -118215824 + L2 LINE L2 217 1823 -1491 2380 146 43 41 chr3 99821403 99821896 -118215262 - L1MA9 LINE L1 -6 6306 5813 3567 80 2 0 chr3 99821902 99822375 -118214783 - L1PA5 LINE L1 -4 6150 5677 1761 55 21 8 chr3 99822375 99822608 -118214550 - L1PA5 LINE L1 -6 6148 5910 1703 115 21 0 chr3 99822609 99822888 -118214270 - L1PA5 LINE L1 -472 5682 5398 4461 107 6 1 chr3 99823131 99823795 -118213363 - L1PA5 LINE L1 -1063 5083 4417 * 6736 88 3 17 chr3 99823783 99824762 -118212396 + L1PA5 LINE L1 3443 4407 -1739 2711 237 33 8 chr3 99824981 99825610 -118211548 + MER82 DNA MER2_type 8 652 -1 1762 139 3 66 chr3 99826064 99826194 -118210964 + AluSx SINE Alu 1 138 -174 328 154 0 0 chr3 99826194 99826259 -118210899 + L1PA13 LINE L1 6098 6162 -1 1762 139 3 66 chr3 99826259 99826423 -118210735 + AluSx SINE Alu 138 278 -34 1557 140 0 0 chr3 99826423 99826658 -118210500 + AluSx SINE Alu 62 296 -16 281 243 55 39 chr3 99827008 99827189 -118209969 - L1M4 LINE L1 -2158 3988 3805 286 330 21 32 chr3 99829078 99829172 -118207986 - L2 LINE L2 -38 3234 3142 297 203 78 0 chr3 99829311 99829375 -118207783 - U6 snRNA snRNA -15 92 24 372 94 0 0 chr3 99829656 99829709 -118207449 + (TA)n Simple_repeat Simple_repeat 2 54 0 3134 88 0 31 chr3 99829885 99830342 -118206816 + L1PA8 LINE L1 5703 6145 -27 424 294 29 15 chr3 99830676 99830812 -118206346 + L2 LINE L2 3168 3305 -8 29 28 0 0 chr3 99831301 99831337 -118205821 + AT_rich Low_complexity Low_complexity 1 36 0 1885 157 91 3 chr3 99832116 99832447 -118204711 + THE1B LTR MaLR 5 364 0 4877 93 3 0 chr3 99832447 99833103 -118204055 + THE1B-int LTR MaLR 1 658 -922 1329 112 5 20 chr3 99833102 99833298 -118203860 - THE1-int LTR MaLR -741 839 647 * 203 234 21 0 chr3 99833657 99833704 -118203454 + (TA)n Simple_repeat Simple_repeat 1 48 0 462 270 184 7 chr3 99833855 99834007 -118203151 + MER5A DNA MER1_type 11 189 0 458 227 52 0 chr3 99834044 99834198 -118202960 - Charlie5 DNA MER1_type -27 2585 2424 674 255 72 39 chr3 99834201 99834409 -118202749 + MER20 DNA MER1_type 5 219 0 225 250 17 0 chr3 99834808 99834868 -118202290 + CT-rich Low_complexity Low_complexity 5 65 0 201 376 16 24 chr3 99835121 99835246 -118201912 + MIR3 SINE MIR 62 185 -23 2223 81 0 0 chr3 99835430 99835743 -118201415 - AluY SINE Alu 0 313 1 1467 136 175 23 chr3 99835990 99836298 -118200860 - MLT1A1 LTR MaLR 0 365 11 224 298 106 11 chr3 99836434 99836528 -118200630 + MIR SINE MIR 54 156 -106 687 75 0 0 chr3 99837755 99837849 -118199309 + (TA)n Simple_repeat Simple_repeat 2 95 0 244 174 43 0 chr3 99838606 99838652 -118198506 + MIR SINE MIR 157 204 -58 42507 36 23 1 chr3 99838743 99844759 -118192399 - L1PA2 LINE L1 -6 6149 1 198 371 73 8 chr3 99845626 99845750 -118191408 - L2 LINE L2 0 3272 3141 375 234 35 35 chr3 99845935 99846076 -118191082 + L1ME3A LINE L1 5944 6084 -86 811 230 55 57 chr3 99846135 99846468 -118190690 + MLT1B LTR MaLR 1 367 -61 2226 247 54 20 chr3 99846469 99847209 -118189949 + L1 LINE L1 2149 2913 -3233 725 206 0 14 chr3 99847234 99847375 -118189783 + AluJb SINE Alu 4 142 -170 2290 74 7 0 chr3 99847377 99847662 -118189496 + AluY SINE Alu 1 287 -24 1326 205 14 70 chr3 99847681 99848292 -118188866 + L1 LINE L1 3481 5195 -951 3105 183 41 2 chr3 99898905 99899464 -118137694 + LTR69 LTR ERVL 1 581 -7 274 317 81 0 chr3 99899940 99900063 -118137095 + MIR SINE MIR 99 231 -31 22 0 0 0 chr3 99900231 99900253 -118136905 + AT_rich Low_complexity Low_complexity 1 22 0 1675 177 0 0 chr3 99900253 99900535 -118136623 + AluJb SINE Alu 1 282 -30 509 247 70 44 chr3 99901755 99901913 -118135245 - MIR SINE MIR -37 225 64 198 0 0 0 chr3 99902279 99902301 -118134857 + (TC)n Simple_repeat Simple_repeat 1 22 0 441 300 12 31 chr3 99902847 99903007 -118134151 + MER69A DNA AcHobo 2 158 -19 454 266 95 13 chr3 99903175 99903333 -118133825 + MLT1J1 LTR MaLR 274 444 -2 233 378 34 8 chr3 99903687 99903806 -118133352 + MIR SINE MIR 20 141 -121 336 148 0 0 chr3 99903867 99903928 -118133230 + (TG)n Simple_repeat Simple_repeat 1 61 0 419 215 108 57 chr3 99904571 99904729 -118132429 + L2 LINE L2 2937 3102 -170 248 367 0 0 chr3 99907566 99907645 -118129513 - L2 LINE L2 0 3272 3194 30 45 0 0 chr3 99907660 99907704 -118129454 + AT_rich Low_complexity Low_complexity 1 44 0 26 0 0 0 chr3 99908866 99908892 -118128266 + AT_rich Low_complexity Low_complexity 1 26 0 210 259 17 0 chr3 99910423 99910481 -118126677 + MER5A DNA MER1_type 44 102 -87 224 230 54 27 chr3 99910797 99910871 -118126287 - MER5A DNA MER1_type -3 186 111 198 274 94 28 chr3 99910906 99911012 -118126146 - MER5A DNA MER1_type -69 120 8 1831 82 8 0 chr3 99911829 99912072 -118125086 - L1P4 LINE L1 -437 5726 5482 1976 109 0 29 chr3 99912072 99912383 -118124775 + L1PA13 LINE L1 5860 6163 0 354 284 62 44 chr3 99912401 99912626 -118124532 + L1M4 LINE L1 2933 3161 -2985 27 62 0 0 chr3 99912634 99912682 -118124476 + AT_rich Low_complexity Low_complexity 1 48 0 490 357 191 15 chr3 99912975 99913725 -118123433 - L2 LINE L2 -1481 1833 952 303 348 62 46 chr3 99913945 99914198 -118122960 - L2 LINE L2 -2833 481 221 2336 84 0 7 chr3 99914198 99914497 -118122661 + AluSg SINE Alu 1 297 -13 303 348 62 46 chr3 99914497 99914548 -118122610 - L2 LINE L2 -3093 221 172 513 420 35 14 chr3 99915177 99915606 -118121552 + L2 LINE L2 2831 3268 -4 21 0 0 0 chr3 99916716 99916737 -118120421 + AT_rich Low_complexity Low_complexity 1 21 0 1188 170 126 67 chr3 99917057 99917398 -118119760 + MLT1A1 LTR MaLR 1 361 -4 3746 230 53 81 chr3 99917402 99918643 -118118515 + MLT1A1-int LTR MaLR 1 1206 -529 506 297 62 41 chr3 99918797 99919145 -118118013 + MLT1K LTR MaLR 181 574 -14 27 0 0 0 chr3 99919207 99919234 -118117924 + AT_rich Low_complexity Low_complexity 1 27 0 1195 167 75 11 chr3 99919386 99919668 -118117490 + MER33 DNA MER1_type 3 302 -22 333 118 0 0 chr3 99919948 99919999 -118117159 + (TTCC)n Simple_repeat Simple_repeat 1 51 0 1024 50 25 19 chr3 99919999 99920160 -118116998 + (TTTC)n Simple_repeat Simple_repeat 4 165 0 954 281 113 49 chr3 99920555 99921022 -118116136 + MLT1J LTR MaLR 5 501 -10 24 0 0 0 chr3 99921953 99921977 -118115181 + AT_rich Low_complexity Low_complexity 1 24 0 42 48 0 0 chr3 99922216 99922279 -118114879 + AT_rich Low_complexity Low_complexity 1 63 0 12187 189 19 9 chr3 99922643 99923808 -118113350 + L1PB1 LINE L1 2523 3675 -2476 195 114 0 0 chr3 99923808 99923843 -118113315 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 12187 189 19 9 chr3 99923843 99926274 -118110884 + L1PB1 LINE L1 3675 6150 -1 27 49 0 0 chr3 99927950 99927991 -118109167 + AT_rich Low_complexity Low_complexity 1 41 0 1078 81 0 25 chr3 99928537 99928698 -118108460 - L1PA7 LINE L1 0 6154 5998 569 43 0 0 chr3 99928698 99928767 -118108391 + L1P2 LINE L1 5591 5659 -496 2223 112 3 0 chr3 99929147 99929459 -118107699 + AluSp SINE Alu 1 313 0 218 250 198 9 chr3 99930153 99930269 -118106889 - MIR SINE MIR -5 257 120 698 226 79 17 chr3 99931212 99931389 -118105769 + MER5A DNA MER1_type 2 189 0 270 266 21 32 chr3 99931389 99931483 -118105675 - MLT1J2 LTR MaLR -6 444 352 324 189 105 53 chr3 99931641 99931736 -118105422 - MLT1J1 LTR MaLR -344 102 3 23 0 0 0 chr3 99932042 99932065 -118105093 + AT_rich Low_complexity Low_complexity 1 23 0 221 286 59 5 chr3 99933840 99933939 -118103219 - MIR SINE MIR -65 143 34 22 0 0 0 chr3 99935016 99935038 -118102120 + AT_rich Low_complexity Low_complexity 1 22 0 373 80 0 0 chr3 99936274 99936324 -118100834 - MADE1 DNA Mariner -1 79 30 258 105 0 0 chr3 99936339 99936377 -118100781 + (TG)n Simple_repeat Simple_repeat 2 39 0 27 29 0 0 chr3 99936970 99937004 -118100154 + AT_rich Low_complexity Low_complexity 1 34 0 22 80 0 0 chr3 99937259 99937309 -118099849 + AT_rich Low_complexity Low_complexity 1 50 0 22 56 0 0 chr3 99937609 99937645 -118099513 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr3 99941140 99941163 -118095995 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr3 99941601 99941630 -118095528 + AT_rich Low_complexity Low_complexity 1 29 0 723 194 59 54 chr3 99941873 99942095 -118095063 - L1MD3 LINE L1 0 7995 7773 379 316 62 47 chr3 99942097 99942353 -118094805 - MLT1L LTR MaLR -332 283 24 2337 177 7 25 chr3 99942409 99942850 -118094308 + Tigger2a DNA MER2_type 1 433 -1 453 338 42 25 chr3 99943729 99943969 -118093189 + MIR SINE MIR 18 261 -1 2042 133 0 3 chr3 99944218 99944511 -118092647 - AluSx SINE Alu -20 292 1 207 176 0 0 chr3 99945089 99945123 -118092035 + (CATA)n Simple_repeat Simple_repeat 4 37 0 1150 257 69 45 chr3 99945123 99945586 -118091572 + L1ME3 LINE L1 5665 6138 -24 21 0 0 0 chr3 99945606 99945627 -118091531 + AT_rich Low_complexity Low_complexity 1 21 0 541 189 182 0 chr3 99945714 99945873 -118091285 - MER53 DNA DNA 0 189 2 1864 125 0 17 chr3 99947131 99947419 -118089739 - AluSg SINE Alu -16 294 12 1926 136 17 3 chr3 99947576 99947878 -118089280 - AluSp SINE Alu -7 306 1 205 208 0 21 chr3 99948146 99948194 -118088964 + L2 LINE L2 3222 3268 -4 23 0 0 0 chr3 99949153 99949176 -118087982 + AT_rich Low_complexity Low_complexity 1 23 0 519 278 61 19 chr3 99949188 99949451 -118087707 + L1ME LINE L1 4916 5189 -957 2640 35 0 0 chr3 99949463 99949774 -118087384 + AluY SINE Alu 1 311 0 294 330 52 34 chr3 99950008 99950275 -118086883 + L1ME LINE L1 5450 5721 -441 305 263 74 0 chr3 99951515 99951610 -118085548 - MER58 DNA MER1_type 0 2420 2319 248 220 0 0 chr3 99952015 99952065 -118085093 - MER113 DNA MER1_type? -470 51 2 2142 131 100 3 chr3 99952889 99953279 -118083879 - MSTA LTR MaLR 0 428 1 236 321 69 31 chr3 99953481 99953640 -118083518 - MLT1K LTR MaLR -10 578 414 264 197 45 15 chr3 99954413 99954479 -118082679 - MLT1K LTR MaLR -4 584 517 35 54 0 0 chr3 99954731 99954787 -118082371 + AT_rich Low_complexity Low_complexity 1 56 0 25000 144 8 16 chr3 99955012 99960347 -118076811 - L1PA12 LINE L1 0 7569 1493 639 230 16 63 chr3 99960736 99960927 -118076231 + LTR41 LTR ERVL 6 187 -586 297 311 19 71 chr3 99961121 99961388 -118075770 + LTR41 LTR ERVL 510 762 -11 262 273 61 10 chr3 99961391 99961490 -118075668 + MIR SINE MIR 131 234 -28 1023 305 45 30 chr3 99962535 99963027 -118074131 - LTR33 LTR ERVL -20 501 3 180 0 0 0 chr3 99963860 99963880 -118073278 + (A)n Simple_repeat Simple_repeat 1 20 0 311 112 45 0 chr3 99964626 99964715 -118072443 + (TA)n Simple_repeat Simple_repeat 1 93 0 303 275 44 0 chr3 99964715 99964806 -118072352 - L1MC4 LINE L1 -1337 6705 6611 31 58 0 0 chr3 99964806 99964858 -118072300 + AT_rich Low_complexity Low_complexity 1 52 0 227 196 18 0 chr3 99966227 99966283 -118070875 + HAL1 LINE L1 961 1017 -1490 8377 218 14 42 chr3 99966364 99966491 -118070667 + L1PA16 LINE L1 2938 3067 -3099 1478 54 0 0 chr3 99966491 99966676 -118070482 - L1PA5 LINE L1 -2 6152 5968 8377 218 14 42 chr3 99966676 99969867 -118067291 + L1PA16 LINE L1 3067 6157 -9 21 0 0 0 chr3 99970029 99970050 -118067108 + AT_rich Low_complexity Low_complexity 1 21 0 1385 73 0 17 chr3 99970056 99970235 -118066923 + AluY SINE Alu 1 176 -135 304 276 70 32 chr3 99970757 99970913 -118066245 + HAL1 LINE L1 1497 1658 -849 1884 211 35 10 chr3 99970915 99971517 -118065641 + L1ME3 LINE L1 5031 5652 -707 914 337 38 11 chr3 99971536 99971907 -118065251 - L2 LINE L2 -891 2423 2043 243 271 98 0 chr3 99971927 99972060 -118065098 - L1M4 LINE L1 -2241 3905 3760 374 328 90 55 chr3 99972202 99972726 -118064432 + L1MC/D LINE L1 4736 5277 -869 390 347 60 20 chr3 99972756 99973201 -118063957 + L1MC/D LINE L1 5308 5782 -388 26 30 0 0 chr3 99973695 99973728 -118063430 + AT_rich Low_complexity Low_complexity 1 33 0 17776 30 0 1 chr3 99973728 99976629 -118060529 - L1PA3 LINE L1 -3 6152 3254 3579 153 8 73 chr3 99976631 99976984 -118060174 - LTR1 LTR ERV1 0 785 411 2573 43 0 0 chr3 99976984 99977284 -118059874 - AluY SINE Alu -2 309 10 3579 153 8 73 chr3 99977284 99977762 -118059396 - LTR1 LTR ERV1 -374 411 8 270 333 43 24 chr3 99977916 99978171 -118058987 + L1ME3 LINE L1 5670 5929 -233 208 340 0 0 chr3 99978636 99978730 -118058428 + A-rich Low_complexity Low_complexity 1 94 0 236 281 22 34 chr3 99979660 99979749 -118057409 - MIR SINE MIR -91 171 84 357 43 0 0 chr3 99980446 99980493 -118056665 + (TA)n Simple_repeat Simple_repeat 1 47 0 225 240 0 0 chr3 99982824 99982874 -118054284 - MIR SINE MIR -65 197 148 610 171 0 17 chr3 99982881 99982998 -118054160 - FRAM SINE Alu -4 172 58 413 212 81 10 chr3 99982998 99983097 -118054061 - MIR SINE MIR -122 140 35 285 272 68 0 chr3 99983987 99984090 -118053068 - L1MC4a LINE L1 -1884 5924 5815 35 0 0 0 chr3 99985465 99985500 -118051658 + AT_rich Low_complexity Low_complexity 1 35 0 2154 113 0 7 chr3 99985503 99985813 -118051345 - AluSc SINE Alu -1 308 1 306 293 107 45 chr3 99986578 99986796 -118050362 + L1ME2 LINE L1 5641 5885 -277 966 287 40 15 chr3 99986851 99987279 -118049879 + L1ME LINE L1 5333 5773 -389 1008 331 16 11 chr3 99987281 99987649 -118049509 + LTR16C LTR ERVL 14 383 -108 733 343 55 26 chr3 99987819 99988236 -118048922 + HERV16 LTR ERVL 358 786 -4210 1003 305 37 77 chr3 99988263 99989060 -118048098 + L2 LINE L2 2554 3313 0 195 129 0 0 chr3 99989074 99989105 -118048053 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 567 346 22 13 chr3 99989466 99989697 -118047461 + MIR SINE MIR 11 243 -19 264 271 0 0 chr3 99989952 99990011 -118047147 - MIR SINE MIR -131 131 73 200 133 0 0 chr3 99990371 99990401 -118046757 + MIR SINE MIR 88 117 -91 202 327 79 0 chr3 99990548 99990649 -118046509 + L2 LINE L2 3204 3312 -1 1242 126 0 0 chr3 99992608 99992782 -118044376 - AluSg/x SINE Alu -18 291 118 297 0 0 0 chr3 99993129 99993162 -118043996 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr3 99993162 99993183 -118043975 + AT_rich Low_complexity Low_complexity 1 21 0 1211 239 19 4 chr3 99993183 99993451 -118043707 - MER57B LTR ERV1 -162 272 1 13950 152 17 14 chr3 99993464 99995849 -118041309 + Tigger1 DNA MER2_type 26 2417 -1 372 162 29 0 chr3 99995975 99996043 -118041115 + Tigger2 DNA MER2_type 1 70 -2648 2341 162 19 12 chr3 99996043 99996456 -118040702 + Tigger2 DNA MER2_type 2303 2718 0 29 47 0 0 chr3 99997165 99997208 -118039950 + AT_rich Low_complexity Low_complexity 1 43 0 890 273 107 37 chr3 99998082 99998492 -118038666 - L1MDa LINE L1 -6083 457 19 1529 106 154 26 chr3 99999195 99999504 -118037654 - AluSg SINE Alu 0 344 1 26 0 0 0 chr3 99999755 99999781 -118037377 + AT_rich Low_complexity Low_complexity 1 26 0 21 95 0 0 chr3 100000615 100000678 -118036480 + AT_rich Low_complexity Low_complexity 1 63 0 270 73 0 0 chr3 100001064 100001105 -118036053 + L1PA8 LINE L1 6125 6165 -7 22 99 0 0 chr3 100001504 100001575 -118035583 + AT_rich Low_complexity Low_complexity 1 71 0 23 0 0 0 chr3 100001638 100001661 -118035497 + AT_rich Low_complexity Low_complexity 1 23 0 367 302 9 9 chr3 100005044 100005150 -118032008 + L2 LINE L2 3208 3313 0 295 263 257 26 chr3 100006807 100006959 -118030199 - MIR SINE MIR -71 191 5 681 216 84 113 chr3 100007273 100007295 -118029863 - L1MC5 LINE L1 -465 7496 7475 4098 118 22 2 chr3 100007295 100007933 -118029225 - L1PA16 LINE L1 -1 6165 5515 1531 182 14 70 chr3 100007943 100008312 -118028846 - MER7A DNA MER2_type 0 346 1 681 216 84 113 chr3 100008312 100008792 -118028366 - L1MC5 LINE L1 -495 7466 6998 252 158 35 0 chr3 100008816 100008873 -118028285 + L1PA11 LINE L1 1 59 -7522 10145 216 41 48 chr3 100008879 100010200 -118026958 + L1PA11 LINE L1 1309 2638 -4946 2137 163 20 6 chr3 100010200 100010557 -118026601 - THE1B LTR MaLR 0 364 3 10145 216 41 48 chr3 100010557 100012696 -118024462 + L1PA11 LINE L1 2638 4761 -2823 1173 164 13 0 chr3 100012696 100012922 -118024236 - L1P LINE L1 -2087 4059 3831 11330 143 38 12 chr3 100012990 100014896 -118022262 + L1PA11 LINE L1 4760 6776 -836 213 39 0 0 chr3 100014896 100014922 -118022236 + (CA)n Simple_repeat Simple_repeat 2 27 0 11330 143 38 12 chr3 100014922 100015777 -118021381 + L1PA11 LINE L1 6776 7607 -5 534 281 45 35 chr3 100017021 100017309 -118019849 + L1MCc LINE L1 20 310 -6113 1339 266 45 38 chr3 100017376 100018311 -118018847 + L1MCc LINE L1 2574 3487 -3454 1043 251 3 51 chr3 100018351 100018646 -118018512 + MLT1A2 LTR MaLR 94 374 0 982 265 80 55 chr3 100018651 100019500 -118017658 + L1MCc LINE L1 3496 4365 -2576 320 263 10 0 chr3 100019498 100019597 -118017561 + L1P LINE L1 3133 3232 -2914 * 21 36 0 0 chr3 100019607 100019635 -118017523 + AT_rich Low_complexity Low_complexity 1 28 0 1583 213 43 17 chr3 100019635 100020053 -118017105 - L1P LINE L1 -2481 3665 3237 868 226 0 0 chr3 100020065 100020277 -118016881 + L1MCc LINE L1 5051 5262 -1679 2897 141 61 10 chr3 100020286 100020796 -118016362 + L1PA15 LINE L1 5625 6160 -5 1143 334 56 59 chr3 100020862 100022027 -118015131 + L1M4 LINE L1 3635 4795 -1351 687 75 0 0 chr3 100022125 100022149 -118015009 + (TTCC)n Simple_repeat Simple_repeat 1 118 0 687 75 0 0 chr3 100022149 100022243 -118014915 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 39 50 0 0 chr3 100022518 100022578 -118014580 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr3 100023939 100023960 -118013198 + AT_rich Low_complexity Low_complexity 1 21 0 331 309 77 24 chr3 100025524 100025692 -118011466 + MIR SINE MIR 68 244 -18 198 191 64 21 chr3 100025658 100025705 -118011453 + L2 LINE L2 3256 3304 -9 * 22 0 0 0 chr3 100026793 100026815 -118010343 + AT_rich Low_complexity Low_complexity 1 22 0 29 47 0 0 chr3 100027376 100027419 -118009739 + AT_rich Low_complexity Low_complexity 1 43 0 646 293 114 57 chr3 100027652 100028092 -118009066 + L1MCc LINE L1 124 588 -5835 1577 193 0 4 chr3 100028404 100028669 -118008489 + AluJb SINE Alu 25 288 -24 579 260 30 0 chr3 100028690 100028859 -118008299 + L1MCc LINE L1 1120 1293 -5130 955 232 137 0 chr3 100028862 100029125 -118008033 + L1ME1 LINE L1 5837 6135 -31 25 0 0 0 chr3 100029152 100029177 -118007981 + AT_rich Low_complexity Low_complexity 1 25 0 262 182 45 0 chr3 100029297 100029363 -118007795 - MER103 DNA DNA -43 123 55 246 277 9 45 chr3 100029711 100029823 -118007335 - MER45C DNA AcHobo -1 952 845 2224 198 15 2 chr3 100029823 100030217 -118006941 + L1MB3 LINE L1 29 427 -5957 1893 195 12 79 chr3 100030238 100030966 -118006192 + L1MB3 LINE L1 5064 5754 -662 * 16952 178 33 9 chr3 100030963 100034099 -118003059 + L1MA1 LINE L1 12 3223 -4342 15058 167 18 13 chr3 100034087 100038212 -117998946 + L1MA1 LINE L1 3568 7715 -6 * 3602 139 21 30 chr3 100038233 100038911 -117998247 + L1MB3 LINE L1 5748 6419 0 420 287 33 20 chr3 100038917 100039067 -117998091 - MER45C DNA AcHobo -85 868 717 228 341 24 0 chr3 100039198 100039280 -117997878 - MER45C DNA AcHobo -481 472 389 29 0 0 0 chr3 100039807 100039836 -117997322 + AT_rich Low_complexity Low_complexity 1 29 0 24 91 0 0 chr3 100039945 100040011 -117997147 + AT_rich Low_complexity Low_complexity 1 66 0 7243 25 0 0 chr3 100040583 100041446 -117995712 - L1PA3 LINE L1 -902 5244 4382 7369 33 2 9 chr3 100041446 100042351 -117994807 + L1PA3 LINE L1 5254 6152 -3 228 149 0 0 chr3 100042354 100042401 -117994757 + (A)n Simple_repeat Simple_repeat 1 47 0 282 368 43 0 chr3 100042427 100042544 -117994614 + MIR3 SINE MIR 54 175 -33 287 269 32 43 chr3 100042885 100042978 -117994180 - L2 LINE L2 0 3313 3222 186 133 0 0 chr3 100043893 100043923 -117993235 + (A)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr3 100043977 100043998 -117993160 + AT_rich Low_complexity Low_complexity 1 21 0 206 274 21 21 chr3 100046333 100046428 -117990730 + (TATATG)n Simple_repeat Simple_repeat 5 99 0 21 0 0 0 chr3 100046429 100046450 -117990708 + AT_rich Low_complexity Low_complexity 1 21 0 1123 185 200 11 chr3 100046798 100047058 -117990100 - AluSx SINE Alu -3 309 1 228 153 28 28 chr3 100047077 100047149 -117990009 + CT-rich Low_complexity Low_complexity 4 75 0 416 286 148 30 chr3 100047850 100048053 -117989105 - MLT1J1 LTR MaLR -216 230 4 219 146 0 0 chr3 100048053 100048094 -117989064 + (TC)n Simple_repeat Simple_repeat 2 42 0 1545 201 0 3 chr3 100048097 100048381 -117988777 - AluJo SINE Alu -29 283 1 674 238 66 0 chr3 100048531 100048682 -117988476 + MER58A DNA MER1_type 1 161 0 323 316 68 0 chr3 100049438 100049571 -117987587 - MIR SINE MIR -40 222 81 237 346 130 22 chr3 100049628 100049813 -117987345 - L2 LINE L2 -175 3138 2934 301 316 167 15 chr3 100049874 100050203 -117986955 - L1MDa LINE L1 -5162 1378 1000 232 222 0 0 chr3 100051100 100051145 -117986013 + (CA)n Simple_repeat Simple_repeat 2 46 0 1102 164 227 144 chr3 100051146 100051503 -117985655 + MER7C DNA MER2_type 2 423 -2605 1554 152 4 0 chr3 100051503 100051746 -117985412 + AluSx SINE Alu 50 293 -19 1102 164 227 144 chr3 100051746 100051942 -117985216 + MER7C DNA MER2_type 423 601 -1 420 20 0 0 chr3 100051943 100051992 -117985166 + (TG)n Simple_repeat Simple_repeat 2 50 0 186 298 0 0 chr3 100051994 100052041 -117985117 + L2 LINE L2 3214 3260 -12 25 31 0 0 chr3 100052237 100052269 -117984889 + AT_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr3 100052883 100052909 -117984249 + AT_rich Low_complexity Low_complexity 1 26 0 216 67 0 0 chr3 100053463 100053493 -117983665 + (CA)n Simple_repeat Simple_repeat 1 30 0 2835 107 12 2 chr3 100054172 100054591 -117982567 + L1PB1 LINE L1 5373 5795 -356 2363 119 0 21 chr3 100054631 100055009 -117982149 + L1PB1 LINE L1 5782 6151 0 1213 82 11 6 chr3 100055044 100055226 -117981932 - L1PA4 LINE L1 -8 6147 5965 1976 145 3 0 chr3 100056196 100056493 -117980665 - AluSx SINE Alu -11 301 4 277 86 0 0 chr3 100056649 100056684 -117980474 + U2 snRNA snRNA 1 35 -153 189 182 0 0 chr3 100057145 100057178 -117979980 + L2 LINE L2 3281 3313 0 2526 138 31 0 chr3 100058138 100058551 -117978607 - MSTB LTR MaLR 0 426 1 2364 46 0 4 chr3 100058572 100058885 -117978273 + AluY SINE Alu 1 312 0 2152 115 0 0 chr3 100058892 100059187 -117977971 + AluSx SINE Alu 1 295 -17 2051 114 10 0 chr3 100060090 100060387 -117976771 + AluSx SINE Alu 1 300 -12 324 0 0 0 chr3 100060780 100060816 -117976342 + (TG)n Simple_repeat Simple_repeat 2 37 0 1711 129 11 14 chr3 100061121 100061408 -117975750 + AluSq SINE Alu 1 286 -27 21 0 0 0 chr3 100061414 100061435 -117975723 + AT_rich Low_complexity Low_complexity 1 21 0 1138 122 0 0 chr3 100061461 100061617 -117975541 - AluSg/x SINE Alu -24 286 131 21 71 0 0 chr3 100061620 100061662 -117975496 + AT_rich Low_complexity Low_complexity 1 42 0 430 240 60 13 chr3 100061887 100062037 -117975121 + L1MC5 LINE L1 6960 7116 -845 2716 128 98 42 chr3 100062041 100062541 -117974617 - MER1A DNA MER1_type 0 529 2 283 184 204 48 chr3 100062582 100062685 -117974473 + L1MC5 LINE L1 7163 7281 -680 248 179 0 0 chr3 100062823 100062870 -117974288 + Alu SINE Alu 45 91 -211 580 146 69 15 chr3 100062971 100063101 -117974057 + AluSp/q SINE Alu 156 292 -21 1151 119 28 0 chr3 100063103 100063280 -117973878 + AluSg/x SINE Alu 121 302 -8 2006 139 0 0 chr3 100065771 100066074 -117971084 - AluSx SINE Alu -9 303 1 261 0 0 0 chr3 100067430 100067459 -117969699 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 1628 234 33 11 chr3 100067595 100068080 -117969078 - L1M4 LINE L1 -1698 4448 3956 2107 121 3 0 chr3 100068080 100068378 -117968780 - AluSx SINE Alu -13 299 1 1903 236 25 0 chr3 100068392 100068879 -117968279 - L1P LINE L1 -2451 3695 3197 * 4508 171 23 4 chr3 100068869 100070449 -117966709 + L1PA13 LINE L1 4325 5935 -228 234 0 0 0 chr3 100071317 100071343 -117965815 + (TA)n Simple_repeat Simple_repeat 1 26 0 225 0 0 0 chr3 100071342 100071367 -117965791 + (CA)n Simple_repeat Simple_repeat 2 26 0 * 206 287 0 8 chr3 100071410 100071532 -117965626 + (TA)n Simple_repeat Simple_repeat 2 122 0 21 0 0 0 chr3 100071883 100071904 -117965254 + AT_rich Low_complexity Low_complexity 1 21 0 1637 93 0 5 chr3 100072181 100072397 -117964761 - AluY SINE Alu -93 218 4 1638 181 43 32 chr3 100072876 100073247 -117963911 + THE1C LTR MaLR 1 375 0 33 66 0 0 chr3 100075493 100075554 -117961604 + AT_rich Low_complexity Low_complexity 1 61 0 8302 180 34 3 chr3 100076147 100079090 -117958068 + L1PBa LINE L1 1342 4378 -2484 42329 42 24 1 chr3 100079190 100084613 -117952545 - L1P1 LINE L1 -607 5548 1 2495 83 39 6 chr3 100084984 100085345 -117951813 + THE1C LTR MaLR 3 375 0 603 181 58 7 chr3 100086222 100086377 -117950781 - L1MA7 LINE L1 -1 6290 6128 1283 134 23 5 chr3 100086377 100086593 -117950565 + L1M2 LINE L1 5581 5800 -491 238 304 0 0 chr3 100087016 100087085 -117950073 - L1ME2 LINE L1 -30 6134 6066 1810 168 134 8 chr3 100087370 100087750 -117949408 + MSTA LTR MaLR 1 428 0 809 121 14 21 chr3 100087923 100088063 -117949095 - THE1C LTR MaLR 0 375 237 2327 87 3 6 chr3 100088852 100089163 -117947995 - AluY SINE Alu -1 310 1 900 187 22 6 chr3 100089280 100089462 -117947696 + L1PA16 LINE L1 5979 6163 -3 21 36 0 0 chr3 100089462 100089490 -117947668 + AT_rich Low_complexity Low_complexity 1 28 0 267 312 290 0 chr3 100091062 100091200 -117945958 + MER5B DNA MER1_type 1 178 0 381 298 53 58 chr3 100091495 100091703 -117945455 - MLT1J1 LTR MaLR -6 440 234 231 315 79 8 chr3 100091735 100091862 -117945296 - MLT1J2 LTR MaLR -267 183 48 182 188 0 21 chr3 100092202 100092250 -117944908 + (TG)n Simple_repeat Simple_repeat 2 48 0 1723 186 0 7 chr3 100092457 100092748 -117944410 + AluJo SINE Alu 1 289 -23 1929 132 0 7 chr3 100092899 100093203 -117943955 - L1PB1 LINE L1 -2 6149 5848 299 270 89 43 chr3 100094331 100094617 -117942541 - L2 LINE L2 0 3313 2948 246 269 123 108 chr3 100094840 100095256 -117941902 - L2 LINE L2 -594 2720 2299 720 190 0 38 chr3 100095277 100095435 -117941723 - MER6B DNA MER2_type -1 209 58 2652 192 14 55 chr3 100095475 100096053 -117941105 - MLT2B3 LTR ERVL 0 554 1 31 0 0 0 chr3 100096551 100096582 -117940576 + AT_rich Low_complexity Low_complexity 1 31 0 1478 189 91 16 chr3 100096582 100096900 -117940258 - L1PA16 LINE L1 -9 6157 5816 330 171 37 24 chr3 100097004 100097086 -117940072 - L1PA16 LINE L1 -714 5589 5507 * 4868 218 19 19 chr3 100097062 100097211 -117939947 + L1P4 LINE L1 4085 4232 -1934 2256 107 3 0 chr3 100097211 100097520 -117939638 - AluSq SINE Alu -3 310 1 4868 218 19 19 chr3 100097520 100098776 -117938382 + L1P4 LINE L1 4232 5480 -686 1553 251 34 75 chr3 100098890 100099094 -117938064 - LTR40a LTR ERVL 0 519 308 5920 27 1 3 chr3 100099094 100099796 -117937362 + L1PA4 LINE L1 5455 6155 0 1553 251 34 75 chr3 100099796 100100125 -117937033 - LTR40a LTR ERVL -211 308 8 498 357 114 19 chr3 100100483 100100999 -117936159 - L2 LINE L2 -2212 1102 538 198 327 59 20 chr3 100101241 100101342 -117935816 + L3 LINE CR1 1040 1144 -433 360 64 0 0 chr3 100101423 100101470 -117935688 + (CA)n Simple_repeat Simple_repeat 2 48 0 348 24 0 0 chr3 100101509 100101550 -117935608 + (CA)n Simple_repeat Simple_repeat 2 42 0 7745 203 8 7 chr3 100102058 100104326 -117932832 + L1PB1 LINE L1 3526 5792 -359 282 261 23 0 chr3 100104315 100104403 -117932755 + L1MC4 LINE L1 6613 6702 -1340 * 2258 142 3 0 chr3 100104461 100104821 -117932337 + L1PB1 LINE L1 5783 6143 -8 322 188 21 0 chr3 100105375 100105471 -117931687 + (TA)n Simple_repeat Simple_repeat 1 98 0 1301 108 15 0 chr3 100106682 100106885 -117930273 - L1PA13 LINE L1 0 6163 5958 350 391 65 0 chr3 100107115 100107253 -117929905 + MIR3 SINE MIR 20 166 -42 249 132 57 0 chr3 100107489 100107542 -117929616 - L1MA3 LINE L1 -1 6304 6249 470 285 7 7 chr3 100107716 100107853 -117929305 - MLT1I LTR MaLR -2 407 271 241 325 25 17 chr3 100107946 100108066 -117929092 - MLT1I LTR MaLR -288 121 1 25 31 0 0 chr3 100108320 100108352 -117928806 + AT_rich Low_complexity Low_complexity 1 32 0 321 338 83 19 chr3 100109432 100109648 -117927510 - MIR SINE MIR -6 256 27 3331 169 38 11 chr3 100110021 100110676 -117926482 - L1MA4A LINE L1 -6 6297 5625 3868 134 74 20 chr3 100111120 100111819 -117925339 + L1PA16 LINE L1 5420 6156 -10 412 298 32 27 chr3 100112308 100112496 -117924662 - MLT1J2 LTR MaLR -14 436 248 1857 142 4 0 chr3 100112717 100112985 -117924173 - AluSq SINE Alu -44 269 1 231 191 0 0 chr3 100113753 100113795 -117923363 + (CA)n Simple_repeat Simple_repeat 2 43 0 825 217 0 29 chr3 100114837 100115012 -117922146 - FRAM SINE Alu -4 172 3 189 318 91 40 chr3 100115563 100115739 -117921419 + L2 LINE L2 1913 2097 -1217 35815 97 7 28 chr3 100115825 100122057 -117915101 + L1PA6 LINE L1 11 6154 0 201 121 0 0 chr3 100124238 100124271 -117912887 + (CA)n Simple_repeat Simple_repeat 2 34 0 24 32 0 0 chr3 100124549 100124580 -117912578 + AT_rich Low_complexity Low_complexity 1 31 0 728 248 69 38 chr3 100125363 100125790 -117911368 + MSTD LTR MaLR 20 394 -2 184 340 143 14 chr3 100127556 100127703 -117909455 - L2 LINE L2 -8 3264 3099 258 356 10 0 chr3 100128006 100128107 -117909051 + MLT1J2 LTR MaLR 344 445 -5 637 203 140 0 chr3 100128407 100128550 -117908608 - MIR SINE MIR -2 260 98 264 264 111 49 chr3 100129808 100129833 -117907325 - LTR33A LTR ERVL -7 516 494 2835 6 0 10 chr3 100129833 100130147 -117907011 + AluYa5 SINE Alu 1 311 0 264 264 111 49 chr3 100130147 100130265 -117906893 - LTR33A LTR ERVL -29 494 364 294 350 43 29 chr3 100130340 100130617 -117906541 - MERVL LTR ERVL -2673 2812 2633 234 0 0 0 chr3 100131196 100131222 -117905936 + (CAA)n Simple_repeat Simple_repeat 2 27 0 322 296 10 10 chr3 100131235 100131333 -117905825 + GA-rich Low_complexity Low_complexity 3 100 0 234 321 151 19 chr3 100131333 100131492 -117905666 - LTR33A LTR ERVL -337 186 7 357 0 0 0 chr3 100131548 100131592 -117905566 + L1PA3 LINE L1 6109 6152 -3 2138 107 3 3 chr3 100132721 100133010 -117904148 - AluSc SINE Alu -20 289 1 541 343 6 0 chr3 100133593 100133759 -117903399 - MIR SINE MIR -7 255 89 207 341 33 0 chr3 100134200 100134291 -117902867 - L2 LINE L2 0 3272 3179 352 280 108 6 chr3 100134429 100134586 -117902572 - Charlie8 DNA MER1_type -2137 280 108 2527 22 0 4 chr3 100134594 100135016 -117902142 - L1PA3 LINE L1 -593 5562 5144 5233 42 0 0 chr3 100135016 100135641 -117901517 + L1PA3 LINE L1 5530 6155 0 231 283 76 43 chr3 100135697 100135789 -117901369 + MIR3 SINE MIR 83 177 -31 219 36 0 0 chr3 100137804 100137832 -117899326 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 324 0 0 0 chr3 100137831 100137867 -117899291 + (CA)n Simple_repeat Simple_repeat 1 36 0 210 292 28 0 chr3 100137870 100137942 -117899216 + GA-rich Low_complexity Low_complexity 1 74 0 304 236 64 45 chr3 100138116 100138226 -117898932 + MIR SINE MIR 150 261 -1 458 338 88 4 chr3 100138572 100138800 -117898358 + MIR SINE MIR 5 251 -11 203 376 0 40 chr3 100138978 100139079 -117898079 - L2 LINE L2 0 3272 3176 323 368 26 41 chr3 100139264 100139569 -117897589 - L2 LINE L2 -296 3017 2717 599 331 87 28 chr3 100139701 100140024 -117897134 - LTR16B LTR ERVL -114 350 9 378 305 47 56 chr3 100140134 100140367 -117896791 + L2 LINE L2 3036 3266 -47 294 279 68 56 chr3 100140438 100140599 -117896559 - L2 LINE L2 -846 2468 2306 28 29 0 0 chr3 100141650 100141685 -117895473 + AT_rich Low_complexity Low_complexity 1 35 0 210 333 24 0 chr3 100141749 100141833 -117895325 - L3 LINE CR1 -855 722 637 1519 45 0 15 chr3 100142305 100142504 -117894654 + L1PA6 LINE L1 5959 6154 0 233 388 31 44 chr3 100142588 100142748 -117894410 + MIR3 SINE MIR 15 172 -36 207 256 24 12 chr3 100142796 100142878 -117894280 + (TA)n Simple_repeat Simple_repeat 1 83 0 21 0 0 0 chr3 100143286 100143307 -117893851 + AT_rich Low_complexity Low_complexity 1 21 0 200 174 0 43 chr3 100143604 100143650 -117893508 + A-rich Low_complexity Low_complexity 4 47 0 570 113 42 35 chr3 100143651 100143793 -117893365 + GA-rich Low_complexity Low_complexity 4 146 0 21 36 0 0 chr3 100145912 100145940 -117891218 + AT_rich Low_complexity Low_complexity 1 28 0 212 250 163 43 chr3 100146100 100146192 -117890966 + L2 LINE L2 3170 3272 0 1437 125 3 169 chr3 100148641 100149008 -117888150 - AluSx SINE Alu -6 306 1 21 36 0 0 chr3 100149170 100149198 -117887960 + AT_rich Low_complexity Low_complexity 1 28 0 330 340 80 39 chr3 100149296 100149608 -117887550 + L1ME LINE L1 5338 5662 -459 6109 195 23 11 chr3 100149751 100151595 -117885563 + L1MC1 LINE L1 4442 6314 -19 28 48 0 0 chr3 100151595 100151637 -117885521 + AT_rich Low_complexity Low_complexity 1 42 0 665 299 80 29 chr3 100151698 100152531 -117884627 - L1ME LINE L1 -4657 1423 547 197 246 33 16 chr3 100153190 100153251 -117883907 + L2 LINE L2 3251 3312 -1 308 407 123 13 chr3 100154185 100154421 -117882737 + L2 LINE L2 3011 3272 0 321 339 23 23 chr3 100155902 100156032 -117881126 - MER5A DNA MER1_type -59 130 1 444 37 0 0 chr3 100156089 100156143 -117881015 + (CA)n Simple_repeat Simple_repeat 1 54 0 722 178 20 7 chr3 100156361 100156513 -117880645 - L1MA9 LINE L1 0 6312 6159 297 247 0 13 chr3 100156521 100156598 -117880560 - L1MB1 LINE L1 -103 6065 5990 413 96 36 48 chr3 100156603 100156686 -117880472 + L1MB1 LINE L1 6084 6165 -3 37 23 0 0 chr3 100157285 100157329 -117879829 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr3 100157596 100157617 -117879541 + AT_rich Low_complexity Low_complexity 1 21 0 291 401 25 0 chr3 100159520 100159677 -117877481 - MIR3 SINE MIR -16 192 32 27 62 0 0 chr3 100160013 100160061 -117877097 + AT_rich Low_complexity Low_complexity 1 48 0 802 159 116 42 chr3 100160834 100161023 -117876135 + MER3 DNA MER1_type 1 203 -6 200 191 0 0 chr3 100161880 100161922 -117875236 + GA-rich Low_complexity Low_complexity 2 43 0 25 51 0 0 chr3 100162559 100162598 -117874560 + AT_rich Low_complexity Low_complexity 1 39 0 300 295 7 86 chr3 100163518 100163657 -117873501 + MIR SINE MIR 108 235 -27 265 98 0 33 chr3 100163991 100164052 -117873106 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 606 314 118 12 chr3 100165475 100165797 -117871361 + LTR16A LTR ERVL 95 450 0 233 266 101 25 chr3 100165798 100165877 -117871281 - MLT1K LTR MaLR -251 337 253 213 281 105 35 chr3 100166463 100166577 -117870581 + L2 LINE L2 3191 3312 -1 2056 148 0 7 chr3 100166684 100166982 -117870176 + AluSx SINE Alu 1 296 -16 5288 135 22 51 chr3 100167165 100168639 -117868519 + L1PA13 LINE L1 4685 6096 -67 255 375 81 15 chr3 100168849 100168985 -117868173 - MIR3 SINE MIR -32 176 32 754 292 36 18 chr3 100169042 100169378 -117867780 + L1ME2 LINE L1 5779 6120 -44 13839 188 31 6 chr3 100170514 100173080 -117864078 + L1MA2 LINE L1 16 2646 -4919 1732 178 41 19 chr3 100173080 100173445 -117863713 + THE1C LTR MaLR 1 373 -2 8891 144 16 40 chr3 100173450 100175066 -117862092 + THE1C-int LTR MaLR 4 1580 0 1564 172 93 12 chr3 100175066 100175409 -117861749 + THE1C LTR MaLR 1 371 -4 5486 157 22 3 chr3 100175412 100176454 -117860704 + L1MA2 LINE L1 2641 3702 -3863 10828 218 30 10 chr3 100176464 100179634 -117857524 + L1MA2 LINE L1 3944 7187 -537 852 216 6 0 chr3 100179635 100179797 -117857361 + AluJb SINE Alu 137 299 -13 3059 153 2 9 chr3 100179815 100180369 -117856789 + L1MA2 LINE L1 7174 7723 0 2324 47 0 0 chr3 100180372 100180649 -117856509 + AluY SINE Alu 1 277 -34 2060 195 75 27 chr3 100181974 100182456 -117854702 - MLT1D LTR MaLR 0 505 1 2043 137 45 25 chr3 100182579 100182936 -117854222 + THE1B LTR MaLR 1 364 0 852 248 44 8 chr3 100183167 100183422 -117853736 + L1ME1 LINE L1 5798 6058 -108 * 12269 152 15 75 chr3 100183390 100183422 -117853736 - L1M2 LINE L1 -600 5561 5529 2428 143 52 5 chr3 100183422 100183869 -117853289 - L1PA13 LINE L1 0 6163 5696 12269 152 15 75 chr3 100183869 100184115 -117853043 - L1M2 LINE L1 -632 5529 5270 2400 106 3 0 chr3 100184115 100184464 -117852694 + L1PB2 LINE L1 5791 6140 -11 12269 152 15 75 chr3 100184464 100184503 -117852655 - L1M2 LINE L1 -891 5270 5230 3520 104 9 20 chr3 100184503 100185042 -117852116 + L1PA13 LINE L1 5628 6160 -3 12269 152 15 75 chr3 100185042 100187299 -117849859 - L1M2 LINE L1 -931 5230 3086 185 83 28 0 chr3 100187299 100187335 -117849823 + (TTAG)n Simple_repeat Simple_repeat 3 39 0 12269 152 15 75 chr3 100187335 100187618 -117849540 - L1M2 LINE L1 -3075 3086 2787 188 374 90 18 chr3 100188000 100188166 -117848992 + L2 LINE L2 2804 2981 -291 2411 74 0 16 chr3 100188800 100189111 -117848047 + AluY SINE Alu 1 306 -5 183 235 148 70 chr3 100189683 100189798 -117847360 - L2 LINE L2 -1066 2248 2125 22789 49 3 2 chr3 100190535 100193420 -117843738 - L1P LINE L1 -1846 4300 1414 7138 49 3 0 chr3 100193421 100194433 -117842725 + L1PA4 LINE L1 5141 6155 0 1941 147 4 0 chr3 100194899 100195178 -117841980 + AluSq SINE Alu 1 280 -33 204 40 0 0 chr3 100195185 100195210 -117841948 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr3 100195770 100195792 -117841366 + AT_rich Low_complexity Low_complexity 1 22 0 719 279 87 35 chr3 100196093 100196437 -117840721 - MLT1I LTR MaLR -44 365 4 234 91 0 0 chr3 100196504 100196537 -117840621 + (TA)n Simple_repeat Simple_repeat 2 34 0 10570 199 49 10 chr3 100196572 100199376 -117837782 + L1M1 LINE L1 18 3620 -3945 7443 198 53 51 chr3 100199538 100201488 -117835670 + L1M1 LINE L1 3673 5629 -1936 2208 109 0 13 chr3 100201488 100201799 -117835359 - AluSc SINE Alu 0 309 3 7443 198 53 51 chr3 100201799 100201983 -117835175 + L1M1 LINE L1 5629 5811 -1754 1800 168 24 32 chr3 100201985 100202359 -117834799 - THE1C LTR MaLR -4 371 1 9519 126 59 4 chr3 100202359 100203857 -117833301 - THE1C-int LTR MaLR 0 1580 1 1767 162 35 24 chr3 100203857 100204228 -117832930 - THE1C LTR MaLR 0 375 1 4745 173 13 17 chr3 100204230 100205407 -117831751 + L1M1 LINE L1 5807 6980 -743 368 264 50 0 chr3 100205553 100205674 -117831484 - L1MCa LINE L1 -3568 2858 2732 272 271 125 21 chr3 100205709 100205853 -117831305 - L1MCa LINE L1 -4987 1439 1281 403 301 121 39 chr3 100205855 100206211 -117830947 - L1MCa LINE L1 -4983 1433 1049 5553 154 21 34 chr3 100206591 100207649 -117829509 + L1MC1 LINE L1 5284 6327 -6 1862 196 6 69 chr3 100208684 100209188 -117827970 - L1M3 LINE L1 -863 5985 5514 1135 194 11 50 chr3 100209188 100209257 -117827901 + L1M3 LINE L1 5976 6046 -824 2521 114 11 3 chr3 100209257 100209615 -117827543 - THE1B LTR MaLR -1 363 3 1135 194 11 50 chr3 100209615 100209824 -117827334 + L1M3 LINE L1 6046 6243 -627 1268 105 20 11 chr3 100209828 100210040 -117827118 - MLT2A2 LTR ERVL 0 453 293 939 219 45 5 chr3 100210072 100210125 -117827033 + L1MA10 LINE L1 6100 6149 -185 453 19 0 0 chr3 100210125 100210179 -117826979 + (CA)n Simple_repeat Simple_repeat 2 55 0 939 219 45 5 chr3 100210179 100210349 -117826809 + L1MA10 LINE L1 6149 6332 -2 747 186 26 0 chr3 100260636 100260792 -117776366 - L1 LINE L1 -1555 5293 5134 * 7427 208 43 26 chr3 100260782 100262642 -117774516 - L1 LINE L1 -2060 4788 2961 2049 148 0 0 chr3 100262642 100262945 -117774213 - AluSx SINE Alu -9 303 1 7427 208 43 26 chr3 100262945 100263347 -117773811 - L1 LINE L1 -3887 2961 2465 2250 79 0 0 chr3 100263347 100263638 -117773520 - AluY SINE Alu -20 291 1 7427 208 43 26 chr3 100263638 100263917 -117773241 - L1 LINE L1 -4383 2465 2192 374 272 22 0 chr3 100263905 100263997 -117773161 - L1 LINE L1 -5851 998 905 * 539 259 24 29 chr3 100264098 100264268 -117772890 + MSTA LTR MaLR 203 371 -57 180 0 0 0 chr3 100264268 100264288 -117772870 + (G)n Simple_repeat Simple_repeat 1 20 0 1341 59 1 50 chr3 100264292 100264638 -117772520 - AluY SINE Alu 0 311 19 424 105 0 53 chr3 100264638 100264714 -117772444 + MSTA LTR MaLR 356 427 -1 23 54 0 0 chr3 100264837 100264874 -117772284 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr3 100264956 100264991 -117772167 + AT_rich Low_complexity Low_complexity 1 35 0 35 54 0 0 chr3 100265268 100265324 -117771834 + AT_rich Low_complexity Low_complexity 1 56 0 1744 108 89 4 chr3 100265324 100265583 -117771575 - AluY SINE Alu -28 283 3 24 77 0 0 chr3 100267162 100267214 -117769944 + AT_rich Low_complexity Low_complexity 1 52 0 532 338 75 13 chr3 100267849 100268077 -117769081 - MIR SINE MIR -20 242 1 1766 166 7 0 chr3 100268282 100268566 -117768592 - AluSx SINE Alu -24 288 3 31 0 0 0 chr3 100268999 100269030 -117768128 + AT_rich Low_complexity Low_complexity 1 31 0 234 0 0 0 chr3 100271971 100271997 -117765161 + (A)n Simple_repeat Simple_repeat 1 26 0 311 228 13 13 chr3 100272271 100272350 -117764808 + L1MA4A LINE L1 5834 5912 -391 1499 195 69 3 chr3 100272613 100272931 -117764227 + MER44D DNA MER2_type 1 609 0 322 247 27 0 chr3 100272961 100273034 -117764124 - MER2 DNA MER2_type -1 344 270 204 235 0 0 chr3 100273099 100273150 -117764008 + T-rich Low_complexity Low_complexity 1 51 0 1821 151 16 26 chr3 100273153 100273464 -117763694 - AluJo SINE Alu -1 311 4 837 210 40 11 chr3 100273512 100273688 -117763470 - MER2 DNA MER2_type -164 181 1 279 0 0 0 chr3 100275067 100275098 -117762060 + (ATG)n Simple_repeat Simple_repeat 2 32 0 1836 138 0 14 chr3 100275106 100275396 -117761762 - AluSx SINE Alu -26 286 1 530 320 22 0 chr3 100275921 100276099 -117761059 - MLT1L LTR MaLR -335 280 99 350 331 15 31 chr3 100278310 100278440 -117758718 - MIR SINE MIR -115 147 20 1022 294 52 79 chr3 100278823 100279265 -117757893 + MLT1H LTR MaLR 119 548 -1 24 32 0 0 chr3 100280884 100280915 -117756243 + AT_rich Low_complexity Low_complexity 1 31 0 415 317 56 39 chr3 100281021 100281305 -117755853 + L1M4 LINE L1 5111 5399 -747 334 198 111 14 chr3 100281623 100281695 -117755463 - MLT1H LTR MaLR -363 186 109 2125 105 26 0 chr3 100281699 100282003 -117755155 + AluSx SINE Alu 1 312 0 7539 199 29 5 chr3 100282646 100284083 -117753075 + L1M1 LINE L1 15 1486 -6079 824 160 24 53 chr3 100284083 100284252 -117752906 + MER44D DNA MER2_type 542 705 0 565 243 0 42 chr3 100284713 100284857 -117752301 + AluJb SINE Alu 86 223 -89 183 80 0 0 chr3 100284880 100284905 -117752253 + (A)n Simple_repeat Simple_repeat 1 25 0 1564 166 0 34 chr3 100284905 100285201 -117751957 + AluJb SINE Alu 3 288 -24 234 362 130 11 chr3 100287221 100287406 -117749752 + MIR SINE MIR 49 255 -7 23 68 0 0 chr3 100287718 100287762 -117749396 + AT_rich Low_complexity Low_complexity 1 44 0 1272 211 18 18 chr3 100289478 100289758 -117747400 + AluJo SINE Alu 2 281 -31 823 142 28 6 chr3 100289772 100289948 -117747210 + GA-rich Low_complexity Low_complexity 1 180 0 270 0 0 0 chr3 100290071 100290101 -117747057 + (CA)n Simple_repeat Simple_repeat 2 31 0 10955 149 18 17 chr3 100291786 100293677 -117743481 + Tigger1 DNA MER2_type 1 1893 -525 2249 97 3 0 chr3 100296749 100297048 -117740110 + AluSx SINE Alu 11 310 -2 2840 165 14 14 chr3 100297512 100298026 -117739132 + Tigger1 DNA MER2_type 1905 2418 0 226 271 24 35 chr3 100299732 100299817 -117737341 + MIR SINE MIR 176 259 -3 690 145 36 6 chr3 100300043 100300209 -117736949 + GA-rich Low_complexity Low_complexity 3 173 0 22 0 0 0 chr3 100301121 100301143 -117736015 + AT_rich Low_complexity Low_complexity 1 22 0 324 0 0 0 chr3 100302455 100302491 -117734667 + (TG)n Simple_repeat Simple_repeat 2 37 0 1611 224 22 3 chr3 100303022 100303380 -117733778 + MLT1A1 LTR MaLR 1 365 0 2167 197 61 103 chr3 100303703 100304520 -117732638 + LTR1B LTR ERV1 1 783 -43 929 329 41 3 chr3 100304610 100304926 -117732232 - L2 LINE L2 -1870 1444 1117 363 276 0 46 chr3 100305254 100305341 -117731817 + L2 LINE L2 3190 3272 0 553 0 14 27 chr3 100306479 100306553 -117730605 + (TTTC)n Simple_repeat Simple_repeat 4 76 0 6728 223 38 5 chr3 100307611 100309120 -117728038 + L1MB3 LINE L1 21 1579 -4805 3686 190 32 32 chr3 100309120 100309467 -117727691 - Tigger1 DNA MER2_type 0 2418 2072 189 0 0 0 chr3 100309467 100309488 -117727670 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 3686 190 32 32 chr3 100309488 100309952 -117727206 - Tigger1 DNA MER2_type -345 2073 1607 5431 185 21 12 chr3 100309963 100314368 -117722790 - L1MA2 LINE L1 0 7723 3073 842 75 33 0 chr3 100314368 100314488 -117722670 + L1PA7 LINE L1 6031 6154 0 6022 268 29 19 chr3 100314513 100315014 -117722144 + L1MB3 LINE L1 3724 4218 -2201 342 0 0 0 chr3 100315014 100315052 -117722106 + (TA)n Simple_repeat Simple_repeat 2 39 0 6022 268 29 19 chr3 100315052 100316515 -117720643 + L1MB3 LINE L1 4218 5665 -754 234 0 0 0 chr3 100316515 100316541 -117720617 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6022 268 29 19 chr3 100316541 100316824 -117720334 + L1MB3 LINE L1 5665 6001 -418 2243 104 0 0 chr3 100316824 100317121 -117720037 - AluSg SINE Alu -13 297 1 6022 268 29 19 chr3 100317121 100317148 -117720010 + L1MB3 LINE L1 6001 6026 -393 332 284 23 0 chr3 100317179 100317267 -117719891 - L1MC4 LINE L1 -1339 6703 6614 1858 187 16 0 chr3 100317282 100317661 -117719497 + L1MB3 LINE L1 6025 6409 -10 403 320 141 35 chr3 100317838 100318150 -117719008 + L2 LINE L2 2969 3313 0 326 354 41 14 chr3 100319972 100320119 -117717039 - MER5A DNA MER1_type 0 189 39 251 286 16 0 chr3 100320127 100320190 -117716968 + Zaphod DNA AcHobo 1 64 -3967 272 318 53 30 chr3 100320869 100321001 -117716157 - L2 LINE L2 -4 3309 3175 24 67 0 0 chr3 100321835 100321880 -117715278 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr3 100321903 100321926 -117715232 + AT_rich Low_complexity Low_complexity 1 23 0 209 287 69 40 chr3 100322721 100322822 -117714336 - MER5B DNA MER1_type -15 174 66 26 101 0 0 chr3 100323044 100323133 -117714025 + AT_rich Low_complexity Low_complexity 1 89 0 6274 78 4 33 chr3 100323133 100324204 -117712954 + L1PA7 LINE L1 5096 6141 -13 1963 148 26 17 chr3 100324575 100324926 -117712232 + MSTA LTR MaLR 1 354 -74 243 0 0 0 chr3 100325554 100325581 -117711577 + (A)n Simple_repeat Simple_repeat 1 27 0 402 341 24 24 chr3 100325738 100325905 -117711253 - L2 LINE L2 -534 2780 2614 26 0 0 0 chr3 100326439 100326465 -117710693 + AT_rich Low_complexity Low_complexity 1 26 0 1052 172 4 106 chr3 100326752 100327008 -117710150 - MER30 DNA MER1_type 0 230 1 45 0 0 0 chr3 100327433 100327478 -117709680 + AT_rich Low_complexity Low_complexity 1 45 0 2085 129 0 0 chr3 100327478 100327772 -117709386 - AluSx SINE Alu -18 294 1 234 150 0 0 chr3 100328795 100328835 -117708323 + (TG)n Simple_repeat Simple_repeat 2 41 0 204 125 0 0 chr3 100329781 100329813 -117707345 + (T)n Simple_repeat Simple_repeat 1 32 0 903 48 71 6 chr3 100329964 100330132 -117707026 + CT-rich Low_complexity Low_complexity 2 180 0 309 26 0 0 chr3 100330170 100330208 -117706950 + (TG)n Simple_repeat Simple_repeat 1 38 0 393 245 95 11 chr3 100331125 100331306 -117705852 + MIR SINE MIR 63 258 -4 1093 268 65 48 chr3 100331878 100332229 -117704929 + L1MB8 LINE L1 49 405 -6454 * 15587 79 13 1 chr3 100332228 100334297 -117702861 + L1P LINE L1 2 2094 -4052 4450 30 0 0 chr3 100334297 100334821 -117702337 + L1PA5 LINE L1 5623 6146 -8 21 0 0 0 chr3 100334821 100334842 -117702316 + AT_rich Low_complexity Low_complexity 1 21 0 975 328 22 27 chr3 100334844 100335210 -117701948 + L1MB8 LINE L1 389 752 -6107 2655 240 38 49 chr3 100335213 100336299 -117700859 + L1MB8 LINE L1 930 1980 -4979 2137 117 0 0 chr3 100336299 100336600 -117700558 + AluSx SINE Alu 1 301 0 2655 240 38 49 chr3 100336600 100337092 -117700066 + L1MB8 LINE L1 1980 2476 -4483 * 3950 220 59 58 chr3 100337065 100339621 -117697537 + L1MB8 LINE L1 4434 6988 -1 30 27 0 0 chr3 100340745 100340782 -117696376 + AT_rich Low_complexity Low_complexity 1 37 0 29 28 0 0 chr3 100340932 100340968 -117696190 + AT_rich Low_complexity Low_complexity 1 36 0 356 0 23 0 chr3 100341593 100341637 -117695521 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 328 111 0 2 chr3 100341639 100341873 -117695285 - AluSc SINE Alu -22 277 6 872 353 4 0 chr3 100342219 100342468 -117694690 - L1M2 LINE L1 -5987 862 613 1849 244 65 2 chr3 100342548 100342994 -117694164 - L1M2 LINE L1 -6373 476 3 2806 32 0 12 chr3 100343061 100343403 -117693755 - L1PA5 LINE L1 0 6154 5817 651 294 69 42 chr3 100343591 100343999 -117693159 - HAL1b LINE L1 -790 558 140 22 0 0 0 chr3 100344567 100344589 -117692569 + AT_rich Low_complexity Low_complexity 1 22 0 204 235 20 0 chr3 100344840 100344891 -117692267 + CT-rich Low_complexity Low_complexity 3 54 0 3404 157 28 18 chr3 100344989 100345601 -117691557 + LTR31 LTR ERV1 2 619 0 230 326 70 35 chr3 100345779 100345951 -117691207 + MIR SINE MIR 5 182 -80 1116 181 28 19 chr3 100349893 100350109 -117687049 + MER20 DNA MER1_type 2 219 0 210 309 41 52 chr3 100350949 100351046 -117686112 - MIR3 SINE MIR -2 206 111 25 0 0 0 chr3 100351162 100351187 -117685971 + AT_rich Low_complexity Low_complexity 1 25 0 1284 284 62 25 chr3 100351693 100352178 -117684980 + ERVL LTR ERVL 179 681 -4315 391 309 95 0 chr3 100352207 100352333 -117684825 + ERVL LTR ERVL 732 869 -4127 293 319 69 47 chr3 100352478 100352754 -117684404 + ERVL LTR ERVL 5085 5366 -398 1110 281 102 8 chr3 100352891 100353254 -117683904 + LTR16A LTR ERVL 25 421 -29 297 227 0 0 chr3 100353258 100353324 -117683834 + LTR16A LTR ERVL 385 450 0 201 295 156 16 chr3 100353839 100353961 -117683197 - MER5A DNA MER1_type -50 139 1 1588 284 28 9 chr3 100354737 100354926 -117682232 - L1M4 LINE L1 -2964 3182 2998 2200 117 0 0 chr3 100354926 100355225 -117681933 + AluSq SINE Alu 1 299 -14 1588 284 28 9 chr3 100355225 100355710 -117681448 - L1M4 LINE L1 -3148 2998 2495 191 277 31 0 chr3 100355712 100355777 -117681381 - MIR SINE MIR -124 138 72 1567 213 40 35 chr3 100355918 100356321 -117680837 + MLT1C LTR MaLR 59 463 -4 186 43 0 0 chr3 100356445 100356468 -117680690 + (TG)n Simple_repeat Simple_repeat 2 24 0 356 251 91 70 chr3 100356583 100356770 -117680388 + L2 LINE L2 3122 3312 -1 267 411 68 5 chr3 100359441 100359648 -117677510 - MIR SINE MIR -13 249 30 1121 218 74 100 chr3 100363207 100363706 -117673452 - MLT1D LTR MaLR 0 505 20 254 29 29 0 chr3 100365950 100365985 -117671173 + (TTATA)n Simple_repeat Simple_repeat 1 36 0 2383 82 3 0 chr3 100366930 100367235 -117669923 + AluSq SINE Alu 1 306 -7 216 286 0 0 chr3 100367586 100367642 -117669516 - L2 LINE L2 0 3272 3217 1798 210 27 24 chr3 100369450 100369860 -117667298 - LTR52 LTR ERVL -2 419 9 6367 272 75 65 chr3 100369866 100370757 -117666401 - LTR52-int LTR ERVL 0 3556 2675 1243 217 42 35 chr3 100370757 100371043 -117666115 - AluJo SINE Alu -22 290 3 6367 272 75 65 chr3 100371043 100372901 -117664257 - LTR52-int LTR ERVL -881 2675 782 2080 231 56 15 chr3 100372902 100373518 -117663640 - LTR52-int LTR ERVL -2884 672 3 1452 225 39 22 chr3 100373521 100373930 -117663228 - LTR52 LTR ERVL -4 417 2 200 184 0 0 chr3 100373941 100373979 -117663179 + (TG)n Simple_repeat Simple_repeat 2 39 0 254 311 100 104 chr3 100374083 100374324 -117662834 + MIR SINE MIR 20 259 -3 1973 165 0 9 chr3 100374947 100375262 -117661896 - AluJb SINE Alu 0 312 1 511 377 29 0 chr3 100375330 100375569 -117661589 + LTR16C LTR ERVL 51 296 -195 407 323 52 26 chr3 100375778 100376007 -117661151 + MIR SINE MIR 27 261 -1 237 200 120 0 chr3 100376975 100377025 -117660133 - MIR3 SINE MIR -28 180 125 21 82 0 0 chr3 100377298 100377347 -117659811 + AT_rich Low_complexity Low_complexity 1 49 0 492 119 28 18 chr3 100379002 100379111 -117658047 + (TAGA)n Simple_repeat Simple_repeat 1 110 0 224 182 0 18 chr3 100379661 100379716 -117657442 + (CA)n Simple_repeat Simple_repeat 1 54 0 340 351 8 15 chr3 100380774 100380908 -117656250 - L2 LINE L2 -14 3299 3167 2866 118 2 23 chr3 100381301 100381566 -117655592 - L1PA13 LINE L1 0 6163 5911 2443 47 3 25 chr3 100381566 100381884 -117655274 - AluY SINE Alu 0 311 1 2866 118 2 23 chr3 100381884 100382091 -117655067 - L1PA13 LINE L1 -252 5911 5701 27 0 0 0 chr3 100382435 100382462 -117654696 + AT_rich Low_complexity Low_complexity 1 27 0 313 328 39 44 chr3 100382578 100382758 -117654400 - MER5A DNA MER1_type -1 188 10 282 56 0 0 chr3 100383072 100383108 -117654050 + (GA)n Simple_repeat Simple_repeat 1 36 0 331 311 97 16 chr3 100383494 100383742 -117653416 + L3b LINE CR1 1125 1392 -191 2578 43 0 3 chr3 100383801 100384106 -117653052 - AluY SINE Alu -7 304 1 23 0 0 0 chr3 100384601 100384624 -117652534 + AT_rich Low_complexity Low_complexity 1 23 0 7264 32 4 0 chr3 100385812 100386773 -117650385 - L1PA4 LINE L1 -2 6153 5178 201 39 0 0 chr3 100386791 100386817 -117650341 + (T)n Simple_repeat Simple_repeat 1 26 0 7844 43 1 0 chr3 100386817 100387791 -117649367 - L1PA4 LINE L1 -964 5182 4208 5858 50 12 5 chr3 100387783 100388536 -117648622 + L1P LINE L1 3383 4140 -2006 * 27 49 0 0 chr3 100389113 100389154 -117648004 + AT_rich Low_complexity Low_complexity 1 41 0 198 209 0 0 chr3 100390917 100390960 -117646198 + (TATG)n Simple_repeat Simple_repeat 3 45 0 22928 91 11 1 chr3 100391187 100395268 -117641890 + L1PA7 LINE L1 2024 6142 -12 32 81 0 0 chr3 100395508 100395582 -117641576 + AT_rich Low_complexity Low_complexity 1 74 0 347 298 32 8 chr3 100395583 100395707 -117641451 - L2 LINE L2 0 3313 3187 753 306 144 11 chr3 100395814 100396272 -117640886 - LTR33A LTR ERVL -2 521 3 303 296 31 127 chr3 100396286 100396707 -117640451 + L2 LINE L2 2230 2607 -707 2589 198 33 0 chr3 100396707 100397258 -117639900 - L1MC1 LINE L1 0 6333 5765 303 296 31 127 chr3 100397258 100397286 -117639872 + L2 LINE L2 2607 2636 -678 568 316 190 11 chr3 100397286 100397644 -117639514 + MLT1G1 LTR MaLR 1 422 -173 1850 203 10 20 chr3 100397653 100398057 -117639101 + L1MB8 LINE L1 5587 5986 -192 363 60 0 0 chr3 100398063 100398113 -117639045 + (TG)n Simple_repeat Simple_repeat 1 50 0 483 204 15 38 chr3 100398113 100398245 -117638913 + L1MB8 LINE L1 6049 6177 -1 577 336 78 41 chr3 100398246 100398837 -117638321 + L2 LINE L2 2702 3307 -6 636 286 127 5 chr3 100399837 100400057 -117637101 - MIR SINE MIR -14 248 2 21 0 0 0 chr3 100400075 100400096 -117637062 + AT_rich Low_complexity Low_complexity 1 21 0 303 321 90 0 chr3 100400146 100400280 -117636878 + MIR SINE MIR 63 208 -54 578 299 50 37 chr3 100400359 100400691 -117636467 - MLT1I LTR MaLR -13 396 5 360 0 0 0 chr3 100401761 100401801 -117635357 + (TG)n Simple_repeat Simple_repeat 2 41 0 902 304 58 42 chr3 100401991 100402565 -117634593 + L2 LINE L2 2716 3312 -1 189 195 0 0 chr3 100403198 100403239 -117633919 + (CA)n Simple_repeat Simple_repeat 2 42 0 240 241 0 0 chr3 100403254 100403333 -117633825 + (TA)n Simple_repeat Simple_repeat 1 79 0 254 257 178 41 chr3 100403653 100403991 -117633167 - L1ME4a LINE L1 -63 6058 5675 25 65 0 0 chr3 100405264 100405310 -117631848 + AT_rich Low_complexity Low_complexity 1 46 0 25 23 0 23 chr3 100405797 100405808 -117631350 + AT_rich Low_complexity Low_complexity 1 11 -31 3051 165 19 5 chr3 100405808 100406391 -117630767 + L1MA4 LINE L1 5710 6300 0 25 23 0 23 chr3 100406391 100406422 -117630736 + AT_rich Low_complexity Low_complexity 11 42 0 581 263 50 0 chr3 100406427 100406606 -117630552 + L1MB7 LINE L1 4857 5044 -1102 1829 217 5 8 chr3 100406661 100407058 -117630100 + L1MB7 LINE L1 5459 5854 -330 1730 272 93 11 chr3 100407063 100408177 -117628981 + L1ME2 LINE L1 4890 6100 -64 258 298 50 37 chr3 100408083 100408244 -117628914 + L1MA10 LINE L1 6169 6331 -3 * 1110 133 0 6 chr3 100408638 100408803 -117628355 - AluSg/x SINE Alu -15 297 134 7171 47 2 2 chr3 100408803 100410143 -117627015 - L1PA5 LINE L1 -4 6150 4810 203 274 123 0 chr3 100410576 100410649 -117626509 - MIR SINE MIR -122 140 59 6554 54 143 6 chr3 100462120 100463058 -117574100 + L1P LINE L1 4 1069 -5077 2372 104 3 0 chr3 100463846 100464155 -117573003 - AluSx SINE Alu -2 310 1 23 33 0 0 chr3 100464371 100464401 -117572757 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr3 100464435 100464466 -117572692 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr3 100465591 100465613 -117571545 + AT_rich Low_complexity Low_complexity 1 22 0 1272 194 46 39 chr3 100465840 100466123 -117571035 + AluJo SINE Alu 1 285 -27 247 284 49 29 chr3 100466712 100466814 -117570344 + MIR3 SINE MIR 100 203 -5 270 291 26 8 chr3 100466852 100466969 -117570189 - MLT1L LTR MaLR -3 612 494 285 258 56 22 chr3 100467228 100467317 -117569841 - MLT1L LTR MaLR -523 92 1 1669 70 5 0 chr3 100467603 100467842 -117569316 - AluY SINE Alu 0 305 66 2301 101 3 0 chr3 100468151 100468458 -117568700 + AluSg SINE Alu 1 308 -2 1864 153 10 16 chr3 100470347 100470655 -117566503 + AluSx SINE Alu 1 306 -6 22 56 0 0 chr3 100470742 100470778 -117566380 + AT_rich Low_complexity Low_complexity 1 36 0 285 287 11 23 chr3 100471241 100471328 -117565830 - MIR3 SINE MIR -14 194 109 188 419 57 8 chr3 100471345 100471469 -117565689 - L2 LINE L2 0 3272 3143 2128 179 6 0 chr3 100471863 100472226 -117564932 - MLT1A1 LTR MaLR 0 365 1 2052 62 89 0 chr3 100473026 100473317 -117563841 - L1PA7 LINE L1 0 6154 5838 1367 225 78 103 chr3 100473318 100473937 -117563221 - LTR1B LTR ERV1 -223 603 1 2054 178 35 66 chr3 100474025 100474451 -117562707 - MLT1A1-int LTR MaLR 0 1371 959 369 339 39 0 chr3 100474677 100474807 -117562351 + L2 LINE L2 3179 3313 0 313 111 0 0 chr3 100474967 100475030 -117562128 - L1MA1 LINE L1 -2 6300 6238 21 0 0 0 chr3 100475531 100475552 -117561606 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr3 100475584 100475610 -117561548 + AT_rich Low_complexity Low_complexity 1 26 0 681 278 53 5 chr3 100476196 100476383 -117560775 - MIR SINE MIR -63 199 4 23 33 0 0 chr3 100476590 100476620 -117560538 + AT_rich Low_complexity Low_complexity 1 30 0 25 51 0 0 chr3 100477786 100477825 -117559333 + AT_rich Low_complexity Low_complexity 1 39 0 437 260 83 42 chr3 100479168 100479346 -117557812 - MIR SINE MIR -17 245 60 474 351 33 0 chr3 100479346 100479484 -117557674 + MER5A DNA MER1_type 1 131 -47 * 557 191 0 82 chr3 100479475 100479626 -117557532 - FLAM_C SINE Alu -22 121 6 1927 26 4 0 chr3 100479649 100479883 -117557275 - L1PA2 LINE L1 0 6155 5921 192 263 0 0 chr3 100479898 100479936 -117557222 + MER5A DNA MER1_type 151 188 -1 193 314 12 47 chr3 100480199 100480285 -117556873 + MIR SINE MIR 180 262 0 937 135 37 6 chr3 100480869 100481032 -117556126 - Tigger2 DNA MER2_type -189 2529 2362 285 276 0 35 chr3 100481722 100481809 -117555349 + GA-rich Low_complexity Low_complexity 3 86 0 2513 157 16 25 chr3 100481987 100482420 -117554738 + Tigger2a DNA MER2_type 6 434 0 36 53 0 0 chr3 100482474 100482531 -117554627 + AT_rich Low_complexity Low_complexity 1 57 0 214 373 55 9 chr3 100483287 100483397 -117553761 + MIR SINE MIR 26 140 -68 2808 218 39 2 chr3 100483793 100484363 -117552795 + MER82 DNA MER2_type 62 652 -1 391 347 70 5 chr3 100485114 100485313 -117551845 - MIR SINE MIR -31 231 20 294 326 0 0 chr3 100485958 100486044 -117551114 - L2 LINE L2 -1 3312 3227 260 183 0 17 chr3 100487867 100487927 -117549231 + CT-rich Low_complexity Low_complexity 2 60 0 909 108 5 38 chr3 100487935 100488121 -117549037 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 439 214 45 7 chr3 100488123 100488277 -117548881 + CT-rich Low_complexity Low_complexity 3 162 0 1006 96 0 0 chr3 100488295 100488430 -117548728 - AluSq/x SINE Alu -177 135 1 351 277 118 55 chr3 100488639 100488928 -117548230 - L1M4 LINE L1 -1382 4764 4458 28 0 0 0 chr3 100488963 100488991 -117548167 + AT_rich Low_complexity Low_complexity 1 28 0 360 297 100 57 chr3 100489069 100489668 -117547490 + L1ME LINE L1 5263 5890 -280 1759 19 9 0 chr3 100489738 100489950 -117547208 + L1PA3 LINE L1 5941 6154 -1 24 32 0 0 chr3 100489973 100490004 -117547154 + AT_rich Low_complexity Low_complexity 1 31 0 207 136 15 30 chr3 100490183 100490249 -117546909 + (TGAA)n Simple_repeat Simple_repeat 1 65 0 224 164 0 55 chr3 100490251 100490288 -117546870 + (TAAA)n Simple_repeat Simple_repeat 4 39 -16 1776 145 7 30 chr3 100490288 100490591 -117546567 + AluSx SINE Alu 1 296 -16 224 164 0 55 chr3 100490591 100490608 -117546550 + (TAAA)n Simple_repeat Simple_repeat 39 55 0 1666 179 0 42 chr3 100490890 100491203 -117545955 + AluJo SINE Alu 1 300 -12 246 62 0 0 chr3 100492626 100492658 -117544500 + (TAA)n Simple_repeat Simple_repeat 2 33 0 22 0 0 0 chr3 100493092 100493114 -117544044 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr3 100493380 100493407 -117543751 + AT_rich Low_complexity Low_complexity 1 27 0 27 92 0 0 chr3 100494162 100494238 -117542920 + AT_rich Low_complexity Low_complexity 1 76 0 430 240 104 8 chr3 100494750 100494875 -117542283 - MIR SINE MIR -2 260 124 2349 87 0 0 chr3 100495633 100495943 -117541215 - AluY SINE Alu -1 310 1 2361 41 0 0 chr3 100495961 100496251 -117540907 - L1PA4 LINE L1 -1 6154 5865 773 171 20 0 chr3 100496370 100496516 -117540642 - L1P LINE L1 -890 5256 5108 246 313 62 35 chr3 100499747 100499891 -117537267 - L2 LINE L2 -7 3306 3159 237 372 60 30 chr3 100500343 100500644 -117536514 - L2 LINE L2 -896 2418 2109 214 232 84 65 chr3 100500960 100501115 -117536043 + L2 LINE L2 1902 2059 -1255 317 269 22 22 chr3 100501733 100501881 -117535277 + MLT1I LTR MaLR 72 218 -191 369 43 0 0 chr3 100504911 100504958 -117532200 + (CA)n Simple_repeat Simple_repeat 2 48 0 186 234 85 0 chr3 100506668 100506715 -117530443 + L3 LINE CR1 1405 1455 -122 320 249 85 73 chr3 100507479 100507656 -117529502 - L1MC4 LINE L1 -30 8012 7834 34514 27 2 1 chr3 100507673 100512624 -117524534 - L1PA2 LINE L1 0 6155 1199 21 89 0 0 chr3 100514205 100514261 -117522897 + AT_rich Low_complexity Low_complexity 1 56 0 1261 208 33 0 chr3 100514979 100515224 -117521934 + AluJo SINE Alu 1 253 -59 42 57 0 0 chr3 100515349 100515419 -117521739 + AT_rich Low_complexity Low_complexity 1 70 0 512 288 80 0 chr3 100516964 100517176 -117519982 + L2 LINE L2 2434 2662 -652 21 36 0 0 chr3 100517691 100517719 -117519439 + AT_rich Low_complexity Low_complexity 1 28 0 1084 212 32 5 chr3 100517903 100518120 -117519038 + MER58A DNA MER1_type 2 224 0 2006 147 0 0 chr3 100518144 100518463 -117518695 + AluSx SINE Alu 3 312 0 1753 121 0 90 chr3 100518465 100518787 -117518371 + AluSg SINE Alu 1 293 -17 1731 94 34 84 chr3 100518789 100519137 -117518021 + AluSg SINE Alu 1 333 0 495 296 117 34 chr3 100519641 100519965 -117517193 + L2 LINE L2 2348 2698 -616 1286 281 88 79 chr3 100519965 100521187 -117515971 + L1MC4 LINE L1 6792 8024 -18 313 260 26 0 chr3 100521222 100521299 -117515859 + L2 LINE L2 2701 2779 -535 559 244 90 93 chr3 100521319 100521664 -117515494 + L1MD3 LINE L1 5996 7978 -17 251 299 184 0 chr3 100521668 100521815 -117515343 + L2 LINE L2 2782 2955 -359 241 317 100 25 chr3 100521870 100521990 -117515168 + L2 LINE L2 3180 3308 -5 4298 185 34 37 chr3 100522088 100523211 -117513947 - L1MA9 LINE L1 -38 6274 5158 483 329 134 39 chr3 100523763 100524152 -117513006 + L2 LINE L2 2888 3313 0 582 51 13 0 chr3 100524341 100524420 -117512738 + MADE1 DNA Mariner 1 80 0 200 189 0 0 chr3 100524432 100524469 -117512689 + (CA)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chr3 100524707 100524730 -117512428 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 100526243 100526264 -117510894 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 100528117 100528138 -117509020 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 100528448 100528469 -117508689 + AT_rich Low_complexity Low_complexity 1 21 0 306 0 0 0 chr3 100529052 100529086 -117508072 + (TG)n Simple_repeat Simple_repeat 1 34 0 333 0 0 0 chr3 100530031 100530068 -117507090 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 1802 132 7 11 chr3 100530070 100530351 -117506807 - AluSx SINE Alu -32 280 1 330 263 71 20 chr3 100530361 100530460 -117506698 - MIR SINE MIR -111 151 48 24 32 0 0 chr3 100530648 100530679 -117506479 + AT_rich Low_complexity Low_complexity 1 31 0 201 333 90 45 chr3 100531094 100531271 -117505887 - L2 LINE L2 -5 3308 3124 311 294 0 0 chr3 100531315 100531383 -117505775 - L2 LINE L2 -8 3305 3238 391 329 23 68 chr3 100533614 100533833 -117503325 + L2 LINE L2 2684 2892 -422 1958 124 19 0 chr3 100533871 100534178 -117502980 + AluSq SINE Alu 1 313 0 1285 295 100 36 chr3 100534331 100534705 -117502453 - L2 LINE L2 -1 3312 2963 2168 166 62 33 chr3 100534705 100535145 -117502013 - LOR1a LTR ERV1 0 497 40 378 0 0 0 chr3 100535145 100535187 -117501971 + (TG)n Simple_repeat Simple_repeat 2 43 0 2168 166 62 33 chr3 100535187 100535229 -117501929 - LOR1a LTR ERV1 -457 40 1 1285 295 100 36 chr3 100535229 100535761 -117501397 - L2 LINE L2 -350 2963 2330 245 296 38 45 chr3 100535927 100536059 -117501099 + L2 LINE L2 3107 3237 -76 517 242 86 90 chr3 100536180 100536436 -117500722 - MIR SINE MIR 0 262 8 487 285 70 6 chr3 100538033 100538191 -117498967 - MIR SINE MIR -22 240 73 386 316 25 25 chr3 100540141 100540299 -117496859 + MIR3 SINE MIR 51 208 0 22 0 0 0 chr3 100540981 100541003 -117496155 + AT_rich Low_complexity Low_complexity 1 22 0 1344 202 91 19 chr3 100541190 100541497 -117495661 - MER2 DNA MER2_type 0 345 17 1415 237 22 30 chr3 100541833 100542403 -117494755 - L1ME LINE L1 -471 5764 5198 1006 244 74 40 chr3 100542447 100542519 -117494639 - MER58B DNA MER1_type -2080 340 272 1780 171 49 33 chr3 100542519 100542887 -117494271 + THE1C LTR MaLR 1 374 -1 1006 244 74 40 chr3 100542887 100543138 -117494020 - MER58B DNA MER1_type -2148 272 6 943 219 25 4 chr3 100543144 100543381 -117493777 - L1ME LINE L1 -1065 5150 4909 1483 254 71 10 chr3 100543584 100544077 -117493081 - L1ME LINE L1 -5258 1138 616 3101 144 43 10 chr3 100544095 100544609 -117492549 - Tigger1 DNA MER2_type -4 2414 1884 1023 155 5 31 chr3 100544609 100544803 -117492355 - AluSg/x SINE Alu -8 304 116 11015 148 22 6 chr3 100544903 100546736 -117490422 - Tigger1 DNA MER2_type -551 1867 5 2182 132 0 0 chr3 100546738 100547049 -117490109 + AluSx SINE Alu 1 311 -1 1540 252 47 71 chr3 100547051 100547643 -117489515 - L1ME LINE L1 -5806 590 13 338 329 143 14 chr3 100548497 100548713 -117488445 - MIR SINE MIR 0 262 19 27 0 0 0 chr3 100548956 100548983 -117488175 + AT_rich Low_complexity Low_complexity 1 27 0 229 164 27 0 chr3 100549400 100549473 -117487685 + (CA)n Simple_repeat Simple_repeat 2 76 0 352 316 6 9 chr3 100549507 100549698 -117487460 - MIR SINE MIR -15 247 4 564 294 42 42 chr3 100550001 100550263 -117486895 - MARNA DNA Mariner -216 370 109 298 283 33 8 chr3 100550186 100550306 -117486852 + MARNA DNA Mariner 398 520 -66 * 24 67 0 0 chr3 100551053 100551098 -117486060 + AT_rich Low_complexity Low_complexity 1 45 0 409 99 0 28 chr3 100551868 100551939 -117485219 - Alu SINE Alu -4 308 240 599 291 107 67 chr3 100552661 100553316 -117483842 + L2 LINE L2 2647 3313 0 195 129 0 0 chr3 100554422 100554453 -117482705 + (CAT)n Simple_repeat Simple_repeat 3 33 0 658 346 25 0 chr3 100554470 100554710 -117482448 - MIR SINE MIR -8 254 9 1547 170 55 4 chr3 100555975 100556246 -117480912 - AluJb SINE Alu -27 285 1 457 301 60 21 chr3 100557357 100557639 -117479519 - L2 LINE L2 -1218 2096 1804 687 273 137 13 chr3 100559297 100559524 -117477634 + MIR SINE MIR 8 262 0 342 202 61 0 chr3 100560765 100560864 -117476294 - L1M4 LINE L1 -1886 4329 4225 * 482 282 79 41 chr3 100560854 100560971 -117476187 - L1MEc LINE L1 -3631 2584 2473 3524 120 0 0 chr3 100560971 100561496 -117475662 - L1PA13 LINE L1 -1 6162 5638 482 282 79 41 chr3 100561496 100562136 -117475022 - L1MEc LINE L1 -3742 2473 1836 22 88 0 0 chr3 100562291 100562348 -117474810 + AT_rich Low_complexity Low_complexity 1 57 0 236 214 34 34 chr3 100563204 100563213 -117473945 + (TATATG)n Simple_repeat Simple_repeat 5 13 -80 2101 159 14 6 chr3 100563213 100563558 -117473600 - MER7A DNA MER2_type 0 346 1 236 214 34 34 chr3 100563558 100563637 -117473521 + (TATATG)n Simple_repeat Simple_repeat 12 93 0 23 0 0 0 chr3 100564003 100564026 -117473132 + AT_rich Low_complexity Low_complexity 1 23 0 249 108 0 0 chr3 100564861 100564898 -117472260 + (TG)n Simple_repeat Simple_repeat 2 38 0 234 0 0 0 chr3 100564899 100564925 -117472233 + (TA)n Simple_repeat Simple_repeat 2 27 0 180 0 0 0 chr3 100564929 100564949 -117472209 + (CA)n Simple_repeat Simple_repeat 2 21 0 328 312 156 0 chr3 100565227 100565381 -117471777 - MIR SINE MIR -14 248 71 22 0 0 0 chr3 100566091 100566113 -117471045 + AT_rich Low_complexity Low_complexity 1 22 0 237 33 0 0 chr3 100570819 100570849 -117466309 + (CA)n Simple_repeat Simple_repeat 1 30 0 567 265 105 0 chr3 100572003 100572165 -117464993 - MIR SINE MIR -72 190 12 1654 148 3 67 chr3 100572882 100573212 -117463946 - AluSx SINE Alu -3 309 1 192 111 0 0 chr3 100573214 100573250 -117463908 + (T)n Simple_repeat Simple_repeat 1 36 0 489 206 125 0 chr3 100573271 100573407 -117463751 - L1MA9 LINE L1 0 6312 6160 2862 146 24 4 chr3 100573420 100573920 -117463238 - L1PA16 LINE L1 0 6166 5657 416 354 92 34 chr3 100573920 100574387 -117462771 + L2 LINE L2 2464 2961 -353 24 0 0 0 chr3 100574544 100574568 -117462590 + AT_rich Low_complexity Low_complexity 1 24 0 36 108 0 0 chr3 100574611 100574759 -117462399 + AT_rich Low_complexity Low_complexity 1 148 0 23 0 0 0 chr3 100574817 100574840 -117462318 + AT_rich Low_complexity Low_complexity 1 23 0 1743 155 44 41 chr3 100574869 100575124 -117462034 + MER2 DNA MER2_type 2 260 -84 1817 162 3 3 chr3 100575124 100575414 -117461744 - AluJb SINE Alu -22 290 1 1743 155 44 41 chr3 100575414 100575500 -117461658 + MER2 DNA MER2_type 260 344 0 1813 146 0 0 chr3 100576577 100576851 -117460307 + AluSx SINE Alu 39 312 0 197 356 89 0 chr3 100577440 100577541 -117459617 + MIR SINE MIR 102 211 -51 33 43 0 0 chr3 100578634 100578681 -117458477 + AT_rich Low_complexity Low_complexity 1 47 0 267 268 57 67 chr3 100580054 100580263 -117456895 - L1ME4a LINE L1 -211 5910 5704 186 43 0 0 chr3 100580630 100580653 -117456505 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 535 79 0 0 chr3 100581300 100581376 -117455782 + Alu SINE Alu 226 301 -10 1872 130 13 17 chr3 100581542 100581842 -117455316 - AluSq SINE Alu -14 299 1 2390 56 3 43 chr3 100582135 100582488 -117454670 - AluY SINE Alu 0 340 1 2006 122 7 0 chr3 100582917 100583205 -117453953 + AluSq SINE Alu 5 294 -19 29 0 0 0 chr3 100583773 100583802 -117453356 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr3 100584528 100584553 -117452605 + AT_rich Low_complexity Low_complexity 1 25 0 1536 188 62 3 chr3 100584884 100585172 -117451986 + AluJb SINE Alu 1 305 -7 24 0 0 0 chr3 100587301 100587325 -117449833 + AT_rich Low_complexity Low_complexity 1 24 0 204 354 106 15 chr3 100587547 100587745 -117449413 - MIR SINE MIR -12 250 35 2329 90 3 0 chr3 100588336 100588636 -117448522 - AluSp SINE Alu -10 303 3 21 0 0 0 chr3 100588727 100588748 -117448410 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr3 100588779 100588810 -117448348 + AT_rich Low_complexity Low_complexity 1 31 0 2199 103 3 0 chr3 100589606 100589897 -117447261 + AluSx SINE Alu 4 295 -17 361 193 11 0 chr3 100590846 100590934 -117446224 - LTR37A LTR ERV1 0 426 338 1704 85 4 46 chr3 100590937 100591197 -117445961 - AluY SINE Alu 0 311 63 710 64 0 0 chr3 100591197 100591291 -117445867 - AluY SINE Alu -217 94 1 348 284 22 73 chr3 100591292 100591373 -117445785 - LTR37A LTR ERV1 -78 348 264 333 47 0 0 chr3 100591373 100591416 -117445742 + (TG)n Simple_repeat Simple_repeat 2 44 0 348 284 22 73 chr3 100591416 100591566 -117445592 - LTR37A LTR ERV1 -162 264 129 1695 156 0 15 chr3 100592370 100592639 -117444519 - AluSx SINE Alu -19 293 29 23 0 0 0 chr3 100593426 100593449 -117443709 + AT_rich Low_complexity Low_complexity 1 23 0 1849 132 64 0 chr3 100593452 100593733 -117443425 - AluSx SINE Alu -13 299 1 495 215 28 19 chr3 100593933 100594040 -117443118 - MIR SINE MIR -108 154 47 478 262 18 49 chr3 100594508 100594672 -117442486 + MIR SINE MIR 85 243 -19 447 189 0 22 chr3 100595062 100595152 -117442006 - MIR SINE MIR -10 252 165 916 297 62 19 chr3 100595768 100596186 -117440972 - LTR16B LTR ERVL -10 454 19 344 345 75 52 chr3 100596622 100596889 -117440269 - L2 LINE L2 -465 2849 2577 385 323 146 12 chr3 100596976 100597140 -117440018 + MER5A DNA MER1_type 4 189 0 1420 188 32 41 chr3 100597148 100597488 -117439670 - MER58B DNA MER1_type 0 341 5 246 240 40 0 chr3 100603243 100603318 -117433840 + (TA)n Simple_repeat Simple_repeat 1 78 0 33 25 0 0 chr3 100606090 100606130 -117431028 + AT_rich Low_complexity Low_complexity 1 40 0 225 0 0 0 chr3 100606222 100606247 -117430911 + (TA)n Simple_repeat Simple_repeat 2 26 0 205 342 141 20 chr3 100606540 100606689 -117430469 - MIR SINE MIR -73 189 23 * 277 297 70 23 chr3 100606681 100606809 -117430349 + MIR SINE MIR 128 261 -1 544 173 9 9 chr3 100607234 100607344 -117429814 - L1MB7 LINE L1 -9 6175 6066 33 25 0 0 chr3 100607353 100607393 -117429765 + AT_rich Low_complexity Low_complexity 1 40 0 3020 152 34 4 chr3 100607869 100608635 -117428523 - L1MB7 LINE L1 -538 5774 4983 252 302 0 0 chr3 100608951 100609014 -117428144 - MIR SINE MIR -199 63 1 204 324 29 38 chr3 100609420 100609525 -117427633 + L2 LINE L2 3169 3272 0 30 77 0 0 chr3 100612228 100612293 -117424865 + AT_rich Low_complexity Low_complexity 1 65 0 205 310 133 9 chr3 100612586 100612699 -117424459 - MIR SINE MIR -71 191 65 294 95 0 0 chr3 100613013 100613055 -117424103 + (GGAA)n Simple_repeat Simple_repeat 2 43 0 369 0 0 0 chr3 100613874 100613915 -117423243 + (CA)n Simple_repeat Simple_repeat 2 42 0 215 211 0 0 chr3 100614013 100614051 -117423107 + (CA)n Simple_repeat Simple_repeat 1 38 0 226 299 109 53 chr3 100615592 100616061 -117421097 + L1M4 LINE L1 3640 4134 -2012 22 0 0 0 chr3 100616402 100616424 -117420734 + AT_rich Low_complexity Low_complexity 1 22 0 228 67 0 0 chr3 100617864 100617894 -117419264 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 306 346 55 37 chr3 100618624 100618841 -117418317 + MIR SINE MIR 14 234 -28 436 262 19 10 chr3 100619223 100619326 -117417832 + MIR SINE MIR 51 154 -108 22 0 0 0 chr3 100619957 100619979 -117417179 + AT_rich Low_complexity Low_complexity 1 22 0 446 0 19 0 chr3 100620681 100620735 -117416423 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 346 167 4 8 chr3 100620736 100620799 -117416359 - AluSq SINE Alu -14 289 235 1771 133 0 0 chr3 100620808 100621057 -117416101 - AluSq SINE Alu -64 249 1 182 150 25 0 chr3 100621238 100621278 -117415880 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 26 0 0 0 chr3 100622481 100622507 -117414651 + AT_rich Low_complexity Low_complexity 1 26 0 364 316 67 30 chr3 100622926 100623223 -117413935 - L1ME4a LINE L1 -218 5903 5596 943 151 0 104 chr3 100623366 100623578 -117413580 - AluJb SINE Alu -2 310 121 342 410 89 56 chr3 100623581 100624173 -117412985 - L1ME4a LINE L1 -15 6106 5495 1788 158 0 0 chr3 100625149 100625463 -117411695 - AluSx SINE Alu 0 314 1 423 285 47 62 chr3 100625991 100626184 -117410974 + MARNA DNA Mariner 10 199 -387 753 192 0 8 chr3 100626263 100626393 -117410765 + AluJo SINE Alu 1 129 -183 569 109 22 38 chr3 100626393 100626576 -117410582 + (TA)n Simple_repeat Simple_repeat 1 180 0 2072 125 0 0 chr3 100626619 100626900 -117410258 + AluSx SINE Alu 4 284 -28 24 0 0 0 chr3 100626900 100626924 -117410234 + AT_rich Low_complexity Low_complexity 1 24 0 627 229 121 0 chr3 100626924 100627090 -117410068 + AluJo SINE Alu 121 306 -6 238 216 0 0 chr3 100627904 100627955 -117409203 - Charlie1 DNA MER1_type -656 2105 2055 636 250 13 0 chr3 100627964 100628116 -117409042 - Charlie1 DNA MER1_type -2607 154 1 2424 67 0 10 chr3 100629044 100629358 -117407800 - AluY SINE Alu 0 311 1 710 222 0 14 chr3 100630173 100630317 -117406841 + AluJb SINE Alu 145 286 -26 288 0 0 0 chr3 100630578 100630610 -117406548 + (CA)n Simple_repeat Simple_repeat 1 32 0 305 365 48 0 chr3 100631870 100632015 -117405143 - MIR3 SINE MIR -23 185 34 189 264 0 0 chr3 100633021 100633093 -117404065 + A-rich Low_complexity Low_complexity 4 75 0 892 236 33 0 chr3 100633309 100633521 -117403637 + MER20 DNA MER1_type 1 219 0 24 32 0 0 chr3 100634036 100634067 -117403091 + AT_rich Low_complexity Low_complexity 1 31 0 213 203 14 72 chr3 100635531 100635600 -117401558 - MIR SINE MIR -10 252 188 21 36 0 0 chr3 100635610 100635638 -117401520 + AT_rich Low_complexity Low_complexity 1 28 0 1436 176 0 27 chr3 100635866 100636127 -117401031 + AluSx SINE Alu 1 254 -58 30 59 0 0 chr3 100636251 100636302 -117400856 + AT_rich Low_complexity Low_complexity 1 51 0 192 77 0 0 chr3 100637493 100637519 -117399639 + (T)n Simple_repeat Simple_repeat 1 26 0 399 302 31 0 chr3 100638495 100638654 -117398504 - MIR SINE MIR -6 256 93 276 244 139 0 chr3 100638965 100639051 -117398107 + MER5A DNA MER1_type 9 106 -83 24 0 0 0 chr3 100639507 100639531 -117397627 + AT_rich Low_complexity Low_complexity 1 24 0 256 253 53 13 chr3 100639544 100639619 -117397539 - MIR SINE MIR -5 257 180 226 200 75 0 chr3 100640459 100640499 -117396659 + MER5A DNA MER1_type 147 189 0 1884 120 55 0 chr3 100641456 100641731 -117395427 + AluSx SINE Alu 5 294 -18 219 350 0 50 chr3 100641859 100641959 -117395199 - L2 LINE L2 -5 3308 3214 21 0 0 0 chr3 100642163 100642184 -117394974 + AT_rich Low_complexity Low_complexity 1 21 0 345 24 0 0 chr3 100642694 100642736 -117394422 + (TG)n Simple_repeat Simple_repeat 2 43 0 1908 149 0 3 chr3 100643328 100643623 -117393535 - AluSx SINE Alu -18 294 1 4119 264 55 23 chr3 100643628 100645483 -117391675 - L1MDa LINE L1 -1767 4773 2858 216 0 0 0 chr3 100645483 100645507 -117391651 + (T)n Simple_repeat Simple_repeat 1 24 0 234 0 0 0 chr3 100646071 100646097 -117391061 + (T)n Simple_repeat Simple_repeat 1 26 0 292 283 18 0 chr3 100646100 100646213 -117390945 - L1MDa LINE L1 -3691 2849 2735 221 128 43 0 chr3 100646218 100646265 -117390893 + (TA)n Simple_repeat Simple_repeat 1 49 0 844 200 98 24 chr3 100646340 100646721 -117390437 - L1MDa LINE L1 -3890 2650 2335 212 241 63 38 chr3 100646769 100646848 -117390310 + MIR3 SINE MIR 126 206 -2 31 26 0 0 chr3 100649027 100649065 -117388093 + AT_rich Low_complexity Low_complexity 1 38 0 243 257 0 14 chr3 100649548 100649618 -117387540 + CT-rich Low_complexity Low_complexity 3 71 0 219 354 91 20 chr3 100650425 100650524 -117386634 - L2 LINE L2 -5 3267 3162 916 253 23 8 chr3 100650718 100650975 -117386183 - L1ME1 LINE L1 -8 6158 5898 308 328 40 8 chr3 100651122 100651247 -117385911 - MIR SINE MIR -106 156 28 1900 149 10 0 chr3 100651494 100651782 -117385376 + AluSx SINE Alu 1 291 -21 740 248 19 0 chr3 100654139 100654300 -117382858 - FRAM SINE Alu -11 165 2 9323 98 24 20 chr3 100654957 100656395 -117380763 + L1PA8A LINE L1 4055 5502 -629 2115 85 6 76 chr3 100656395 100656725 -117380433 + AluSg SINE Alu 4 310 0 9323 98 24 20 chr3 100656725 100657345 -117379813 + L1PA8A LINE L1 5502 6118 -13 22 0 0 0 chr3 100657345 100657367 -117379791 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr3 100660024 100660053 -117377105 + (T)n Simple_repeat Simple_repeat 1 29 0 290 359 118 8 chr3 100661180 100661425 -117375733 - L3b LINE CR1 -90 1493 1222 1309 264 120 0 chr3 100661470 100661837 -117375321 - HERVL LTR ERVL -3483 2171 1761 21 36 0 0 chr3 100661870 100661898 -117375260 + AT_rich Low_complexity Low_complexity 1 28 0 684 115 0 0 chr3 100662060 100662164 -117374994 + (TA)n Simple_repeat Simple_repeat 2 105 0 3901 222 46 65 chr3 100662580 100663248 -117373910 - L1MA3 LINE L1 -475 5899 5220 672 144 34 0 chr3 100663248 100663366 -117373792 - L1MA3 LINE L1 -2 6303 6182 3901 222 46 65 chr3 100663366 100664383 -117372775 - L1MA3 LINE L1 -1154 5220 4186 215 31 31 0 chr3 100664383 100664415 -117372743 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2228 86 0 0 chr3 100664417 100664696 -117372462 - AluSc SINE Alu -30 279 1 3901 222 46 65 chr3 100664696 100666351 -117370807 - L1MA3 LINE L1 -2189 4185 2178 312 70 0 0 chr3 100666359 100666402 -117370756 + (TG)n Simple_repeat Simple_repeat 1 43 0 330 80 0 0 chr3 100666402 100666452 -117370706 + (GA)n Simple_repeat Simple_repeat 2 51 0 507 100 11 22 chr3 100666580 100666670 -117370488 - LTR17 LTR ERV1 -522 258 170 674 105 19 0 chr3 100666719 100666824 -117370334 - AluY SINE Alu -7 304 198 1944 88 0 8 chr3 100667012 100667274 -117369884 - AluY SINE Alu -5 306 47 419 295 92 108 chr3 100667399 100667853 -117369305 - L2 LINE L2 0 3272 2826 1103 137 6 6 chr3 100667859 100668034 -117369124 - MER89 LTR ERV1 0 559 385 1654 155 14 20 chr3 100668047 100668344 -117368814 + AluSq SINE Alu 2 296 -17 1068 193 8 42 chr3 100668839 100669098 -117368060 - LTR16C LTR ERVL -9 482 233 207 170 0 0 chr3 100670405 100670452 -117366706 + A-rich Low_complexity Low_complexity 1 47 0 761 135 0 0 chr3 100670677 100670788 -117366370 + FLAM_C SINE Alu 1 111 -32 23 0 0 0 chr3 100671139 100671162 -117365996 + AT_rich Low_complexity Low_complexity 1 23 0 1691 176 3 11 chr3 100671170 100671454 -117365704 + AluJb SINE Alu 21 302 -10 1702 171 20 60 chr3 100671810 100672161 -117364997 + LTR10B LTR ERV1 211 547 0 1219 196 61 5 chr3 100672161 100672442 -117364716 - MSTB LTR MaLR -100 328 1 1441 211 65 16 chr3 100672442 100672764 -117364394 + MLT1C LTR MaLR 130 467 0 1713 155 7 18 chr3 100672811 100672947 -117364211 + AluJb SINE Alu 1 137 -175 1799 107 3 57 chr3 100672947 100673083 -117364075 + AluSx SINE Alu 1 143 -169 1785 135 68 0 chr3 100673083 100673364 -117363794 + AluSx SINE Alu 1 300 -12 1799 107 3 57 chr3 100673364 100673545 -117363613 + AluSx SINE Alu 143 301 -11 1713 155 7 18 chr3 100673545 100673686 -117363472 + AluJb SINE Alu 137 275 -37 488 125 11 34 chr3 100673827 100673915 -117363243 - LTR44 LTR ERV1 -408 111 26 911 115 47 0 chr3 100673955 100674103 -117363055 - Tigger3(Golem) DNA MER2_type -300 2729 2575 1360 126 10 5 chr3 100674123 100674329 -117362829 - AluJb SINE Alu -17 295 89 1298 143 14 14 chr3 100674350 100674560 -117362598 - AluJb SINE Alu -18 294 85 670 79 35 0 chr3 100674567 100674681 -117362477 - Tigger3(Golem) DNA MER2_type -468 2561 2444 1968 116 10 3 chr3 100674681 100674974 -117362184 + AluSg1 SINE Alu 1 295 -14 1010 117 26 7 chr3 100674974 100675128 -117362030 + AluSg/x SINE Alu 134 290 -22 3177 123 25 4 chr3 100675652 100676140 -117361018 - L1PB3 LINE L1 -50 6104 5607 5750 52 10 0 chr3 100676140 100676832 -117360326 + LTR5 LTR ERVK 1 699 -270 1474 201 24 7 chr3 100677094 100677387 -117359771 - AluJo SINE Alu -14 298 1 1807 174 16 0 chr3 100677520 100677825 -117359333 + AluJo SINE Alu 1 310 -2 25 0 0 0 chr3 100678393 100678418 -117358740 + AT_rich Low_complexity Low_complexity 1 25 0 316 287 90 36 chr3 100678962 100679129 -117358029 + MER5B DNA MER1_type 2 177 -1 1937 144 4 0 chr3 100679199 100679502 -117357656 + AluSx SINE Alu 3 306 0 1860 162 7 3 chr3 100680236 100680526 -117356632 + AluJb SINE Alu 1 291 -21 468 0 0 0 chr3 100680553 100680605 -117356553 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 393 267 12 0 chr3 100680662 100680748 -117356410 - MIR SINE MIR -105 157 71 439 279 121 12 chr3 100680860 100681034 -117356124 + MIR SINE MIR 1 192 -63 259 330 0 10 chr3 100681182 100681282 -117355876 - MIR SINE MIR -1 261 163 1889 151 3 20 chr3 100682446 100682751 -117354407 - AluJb SINE Alu -12 300 1 232 278 33 33 chr3 100682942 100683032 -117354126 + L2 LINE L2 2684 2773 -541 396 145 0 0 chr3 100683539 100683601 -117353557 - LTR10E LTR ERV1 -362 271 210 741 21 11 0 chr3 100683602 100683696 -117353462 - LTR10E LTR ERV1 -538 95 1 2957 282 20 22 chr3 100683757 100684671 -117352487 - HERVI LTR ERV1 -138 7647 6736 910 190 0 0 chr3 100684914 100685072 -117352086 - AluSq SINE Alu -25 288 131 1454 102 0 15 chr3 100685084 100685289 -117351869 - AluSg/x SINE Alu -6 304 103 2114 132 41 35 chr3 100685302 100685696 -117351462 - LTR10E LTR ERV1 -1 632 237 541 167 0 0 chr3 100686081 100686171 -117350987 + AluSg/x SINE Alu 212 301 -9 336 24 0 0 chr3 100686171 100686212 -117350946 + (CA)n Simple_repeat Simple_repeat 2 42 0 2041 170 22 38 chr3 100686301 100686754 -117350404 + L1MB8 LINE L1 5733 6178 0 548 146 0 99 chr3 100686765 100686936 -117350222 + AluYb8 SINE Alu 1 154 -164 207 0 0 0 chr3 100687110 100687133 -117350025 + (A)n Simple_repeat Simple_repeat 1 23 0 263 180 229 0 chr3 100687430 100687491 -117349667 - FLAM_A SINE Alu -18 115 41 684 151 0 0 chr3 100687492 100687598 -117349560 - AluSq/x SINE Alu -201 111 6 1330 146 0 0 chr3 100687598 100687804 -117349354 - L1PB4 LINE L1 -152 6004 5799 326 113 38 0 chr3 100687804 100687857 -117349301 + LTR24B LTR ERV1 517 571 -5 318 259 96 30 chr3 100687950 100688116 -117349042 - L1MC5 LINE L1 -477 7484 7308 180 0 0 0 chr3 100688714 100688734 -117348424 + (TAATG)n Simple_repeat Simple_repeat 4 23 0 395 290 204 23 chr3 100689123 100689475 -117347683 + L2 LINE L2 1276 1691 -1623 197 263 12 25 chr3 100689633 100689713 -117347445 + L2 LINE L2 1706 1784 -1530 362 319 162 30 chr3 100689720 100690152 -117347006 + L2 LINE L2 2320 2808 -506 1237 239 3 17 chr3 100690153 100690446 -117346712 + AluJo SINE Alu 1 289 -13 21 36 0 0 chr3 100690446 100690474 -117346684 + AT_rich Low_complexity Low_complexity 1 28 0 308 149 0 45 chr3 100690529 100690596 -117346562 + L1MA1 LINE L1 6075 6138 -164 409 347 77 25 chr3 100690699 100691013 -117346145 - L2 LINE L2 -273 3040 2705 186 327 209 27 chr3 100691379 100691489 -117345669 + L2 LINE L2 3143 3272 0 213 325 73 57 chr3 100692287 100692410 -117344748 - L2 LINE L2 -13 3300 3176 1963 168 3 12 chr3 100692724 100693064 -117344094 + MER1B DNA MER1_type 1 337 0 212 338 146 25 chr3 100693112 100693476 -117343682 - L2 LINE L2 -532 2782 2375 1725 91 0 0 chr3 100693942 100694168 -117342990 - L1PA8 LINE L1 -496 5676 5450 3621 74 2 6 chr3 100694168 100694648 -117342510 + L1PA8 LINE L1 5684 6165 -7 584 148 9 0 chr3 100694870 100694978 -117342180 + CT-rich Low_complexity Low_complexity 1 109 0 1556 181 59 0 chr3 100694978 100695266 -117341892 - AluSp SINE Alu -8 305 1 23 92 0 0 chr3 100695396 100695461 -117341697 + AT_rich Low_complexity Low_complexity 1 65 0 22 70 0 0 chr3 100695856 100695899 -117341259 + AT_rich Low_complexity Low_complexity 1 43 0 43189 29 21 1 chr3 100696269 100702300 -117334858 - L1HS LINE L1 0 6155 1 24 0 0 0 chr3 100704482 100704506 -117332652 + AT_rich Low_complexity Low_complexity 1 24 0 36 77 0 0 chr3 100705489 100705567 -117331591 + AT_rich Low_complexity Low_complexity 1 78 0 781 210 112 15 chr3 100705870 100706075 -117331083 - MIR SINE MIR -21 241 17 366 361 44 28 chr3 100706171 100706423 -117330735 + MIR SINE MIR 6 261 -1 2228 96 17 0 chr3 100706805 100707106 -117330052 - AluSp SINE Alu -7 306 1 222 37 0 0 chr3 100707170 100707197 -117329961 + (TG)n Simple_repeat Simple_repeat 2 28 0 263 163 65 22 chr3 100707197 100707289 -117329869 + (TA)n Simple_repeat Simple_repeat 2 97 0 23 0 0 0 chr3 100709450 100709473 -117327685 + AT_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr3 100709865 100709904 -117327254 + AT_rich Low_complexity Low_complexity 1 39 0 469 131 48 7 chr3 100711535 100711680 -117325478 + (TA)n Simple_repeat Simple_repeat 1 151 0 201 109 55 0 chr3 100711949 100712004 -117325154 + (TA)n Simple_repeat Simple_repeat 2 59 0 2176 53 0 4 chr3 100712028 100712327 -117324831 - AluY SINE Alu 0 321 24 197 339 60 54 chr3 100712832 100713000 -117324158 - L3 LINE CR1 -15 1562 1394 236 53 26 0 chr3 100713049 100713087 -117324071 + (TG)n Simple_repeat Simple_repeat 2 40 0 562 274 23 62 chr3 100713194 100713500 -117323658 - L2 LINE L2 -1 3312 3019 26 0 0 0 chr3 100713647 100713673 -117323485 + AT_rich Low_complexity Low_complexity 1 26 0 1481 282 64 21 chr3 100713731 100714213 -117322945 - MLT1H1 LTR MaLR 0 555 53 1175 228 120 26 chr3 100714233 100714658 -117322500 - MLT1C LTR MaLR -2 465 1 26 50 0 0 chr3 100717527 100717567 -117319591 + AT_rich Low_complexity Low_complexity 1 40 0 442 290 123 83 chr3 100717806 100718254 -117318904 - MLT1K LTR MaLR 0 588 123 22 42 0 0 chr3 100718367 100718391 -117318767 + AT_rich Low_complexity Low_complexity 1 24 0 221 238 143 56 chr3 100718751 100718877 -117318281 - MIR SINE MIR -56 206 70 203 391 111 17 chr3 100719023 100719384 -117317774 - L2 LINE L2 -682 2632 2238 690 337 157 3 chr3 100719473 100719856 -117317302 - MLT1J2 LTR MaLR -8 442 1 707 350 39 19 chr3 100720069 100720481 -117316677 + LTR16B LTR ERVL 39 458 -6 316 160 80 27 chr3 100720778 100720853 -117316305 - Charlie8 DNA MER1_type -989 1428 1350 342 0 0 0 chr3 100721106 100721144 -117316014 + (CA)n Simple_repeat Simple_repeat 2 39 0 497 317 161 0 chr3 100722359 100722583 -117314575 - MIR SINE MIR 0 262 3 207 162 0 0 chr3 100723424 100723461 -117313697 + (CATA)n Simple_repeat Simple_repeat 2 38 0 558 207 12 0 chr3 100724062 100724320 -117312838 + (TA)n Simple_repeat Simple_repeat 1 261 0 22 0 0 0 chr3 100725025 100725047 -117312111 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 100725189 100725210 -117311948 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr3 100725844 100725876 -117311282 + AT_rich Low_complexity Low_complexity 1 32 0 284 217 9 85 chr3 100725916 100726022 -117311136 + L1P LINE L1 4918 5015 -1131 24 32 0 0 chr3 100726249 100726280 -117310878 + AT_rich Low_complexity Low_complexity 1 31 0 21 71 0 0 chr3 100726806 100726848 -117310310 + AT_rich Low_complexity Low_complexity 1 42 0 212 69 56 42 chr3 100727474 100727546 -117309612 + (TA)n Simple_repeat Simple_repeat 1 73 0 535 304 125 40 chr3 100727688 100728135 -117309023 + HAL1 LINE L1 1125 1609 -898 272 287 37 22 chr3 100728225 100728361 -117308797 - LTR67 LTR ERVL -1 556 419 1141 70 23 0 chr3 100729591 100729762 -117307396 + (TTTCC)n Simple_repeat Simple_repeat 4 178 0 2249 117 7 0 chr3 100729762 100730118 -117307040 - AluY SINE Alu 0 358 1 22 0 0 0 chr3 100730138 100730160 -117306998 + AT_rich Low_complexity Low_complexity 1 22 0 656 242 51 8 chr3 100730553 100730737 -117306421 - MLT1A2 LTR MaLR -7 373 177 192 179 0 0 chr3 100730750 100730789 -117306369 + GA-rich Low_complexity Low_complexity 2 40 0 814 156 24 48 chr3 100730801 100730968 -117306190 - MLT1A2 LTR MaLR -211 163 1 2899 242 31 10 chr3 100731160 100731834 -117305324 + L1MB7 LINE L1 19 706 -6153 848 250 57 21 chr3 100731834 100732166 -117304992 + L1MB7 LINE L1 1624 1967 -4888 301 221 95 0 chr3 100732163 100732258 -117304900 + L1MB7 LINE L1 3222 3325 -3632 * 623 286 31 18 chr3 100732239 100732463 -117304695 + L1MB7 LINE L1 4777 5003 -1954 1171 60 0 27 chr3 100732463 100732547 -117304611 + (GGAA)n Simple_repeat Simple_repeat 1 259 0 1171 60 0 27 chr3 100732547 100732730 -117304428 + (GGAA)n Simple_repeat Simple_repeat 2 179 0 308 207 0 11 chr3 100732701 100732788 -117304370 + GA-rich Low_complexity Low_complexity 4 89 0 591 174 0 53 chr3 100732800 100732990 -117304168 + GA-rich Low_complexity Low_complexity 1 180 0 2391 258 30 32 chr3 100732992 100733815 -117303343 + L1MB7 LINE L1 4957 5778 -1179 236 130 0 0 chr3 100733823 100733869 -117303289 - LTR66 LTR ERVL -171 439 394 657 253 0 0 chr3 100733889 100734067 -117303091 + (TA)n Simple_repeat Simple_repeat 2 179 0 260 330 0 0 chr3 100734072 100734160 -117302998 - L1MC4 LINE L1 -1340 6702 6615 229 323 0 0 chr3 100734181 100734274 -117302884 + L1MC4 LINE L1 6614 6706 -1336 * 3678 208 63 9 chr3 100734273 100735405 -117301753 + L1MB7 LINE L1 5800 6995 0 180 0 0 0 chr3 100735605 100735625 -117301533 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 344 354 44 24 chr3 100736303 100736509 -117300649 - LTR33 LTR ERVL -290 231 22 837 218 35 11 chr3 100736606 100736780 -117300378 - MER5A DNA MER1_type -2 187 10 33 25 0 0 chr3 100737574 100737614 -117299544 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr3 100738169 100738197 -117298961 + AT_rich Low_complexity Low_complexity 1 28 0 224 361 19 0 chr3 100738272 100738380 -117298778 + L2 LINE L2 3197 3306 -7 784 209 0 0 chr3 100738467 100738654 -117298504 - FRAM SINE Alu 0 187 1 527 348 72 32 chr3 100738903 100739303 -117297855 + L2 LINE L2 2433 2848 -466 180 179 0 0 chr3 100739375 100739414 -117297744 + CT-rich Low_complexity Low_complexity 2 40 0 3248 16 0 0 chr3 100740209 100740581 -117296577 - L1PA2 LINE L1 -5 6150 5779 1512 16 92 0 chr3 100740581 100740765 -117296393 + L1PA2 LINE L1 5573 5773 -382 219 191 0 0 chr3 100741433 100741501 -117295657 + CT-rich Low_complexity Low_complexity 1 68 0 2014 313 83 17 chr3 100741501 100742478 -117294680 + L2 LINE L2 1565 2605 -709 1670 93 9 0 chr3 100742686 100742911 -117294247 - AluSp SINE Alu -6 307 81 333 230 35 0 chr3 100743040 100743127 -117294031 - L2 LINE L2 -1401 1913 1824 662 317 104 28 chr3 100743316 100743824 -117293334 + L2 LINE L2 2756 3313 0 326 363 18 18 chr3 100744032 100744316 -117292842 + ERVL LTR ERVL 1033 1316 -4448 641 283 36 27 chr3 100744597 100744816 -117292342 + ERVL LTR ERVL 3053 3273 -2491 779 323 70 51 chr3 100744864 100745635 -117291523 + ERVL LTR ERVL 3413 4198 -1287 582 367 20 4 chr3 100745730 100745975 -117291183 + ERVL LTR ERVL 4415 4663 -1101 582 368 61 23 chr3 100746076 100746516 -117290642 + ERVL LTR ERVL 4833 5289 -475 25 0 0 0 chr3 100747568 100747593 -117289565 + AT_rich Low_complexity Low_complexity 1 25 0 505 324 82 0 chr3 100747951 100748170 -117288988 - LTR33A LTR ERVL -18 505 269 181 345 281 0 chr3 100749360 100749499 -117287659 - L3b LINE CR1 -135 1448 1271 542 314 80 8 chr3 100750424 100750663 -117286495 - MIR SINE MIR -1 261 6 330 363 58 29 chr3 100752308 100752548 -117284610 - MIR SINE MIR 0 262 16 483 283 48 22 chr3 100752736 100753005 -117284153 - L1M4 LINE L1 -2779 3367 3092 * 517 308 37 19 chr3 100752993 100753370 -117283788 - L1M4 LINE L1 -3509 2637 2254 2118 123 3 0 chr3 100753416 100753709 -117283449 - AluSx SINE Alu -8 304 11 2306 169 57 14 chr3 100754429 100754867 -117282291 + MLT1C LTR MaLR 3 459 -8 436 278 137 20 chr3 100758624 100758935 -117278223 + ERVL LTR ERVL 3748 4100 -1385 598 315 19 0 chr3 100759144 100759360 -117277798 + ERVL LTR ERVL 5166 5385 -379 33 0 0 0 chr3 100759362 100759395 -117277763 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr3 100760560 100760589 -117276569 + AT_rich Low_complexity Low_complexity 1 29 0 1964 124 0 4 chr3 100760600 100760873 -117276285 + AluSq SINE Alu 26 297 -16 43 20 0 0 chr3 100761470 100761520 -117275638 + AT_rich Low_complexity Low_complexity 1 50 0 1830 135 31 6 chr3 100762131 100762449 -117274709 + L1MB3 LINE L1 5851 6176 -7 268 368 109 13 chr3 100764514 100764816 -117272342 - L3 LINE CR1 -56 1521 1191 351 280 24 0 chr3 100768376 100768501 -117268657 + LTR37B LTR ERV1 6 133 -335 626 197 7 0 chr3 100768608 100768745 -117268413 + LTR37A LTR ERV1 289 426 0 192 261 116 14 chr3 100768874 100768943 -117268215 + L2 LINE L2 3191 3266 -47 24 0 0 0 chr3 100770151 100770175 -117266983 + AT_rich Low_complexity Low_complexity 1 24 0 1950 103 0 22 chr3 100770854 100771125 -117266033 + AluSg SINE Alu 16 280 -30 414 294 11 91 chr3 100771144 100771419 -117265739 - L1ME1 LINE L1 -5 6230 5978 * 3666 247 34 61 chr3 100771412 100772767 -117264391 - L1ME1 LINE L1 -643 5592 4288 3165 222 80 116 chr3 100772767 100774587 -117262571 + MER52A LTR ERV1 1 1754 -1 3666 247 34 61 chr3 100774587 100774837 -117262321 - L1ME1 LINE L1 -1947 4288 4033 213 65 0 0 chr3 100774837 100774868 -117262290 + (T)n Simple_repeat Simple_repeat 1 31 0 13615 175 29 12 chr3 100774931 100779671 -117257487 - L1 LINE L1 -1052 6513 1688 1933 113 81 169 chr3 100779672 100780169 -117256989 - MLT2A2 LTR ERVL 0 453 1 4540 199 7 2 chr3 100780169 100780987 -117256171 - L1 LINE L1 -5874 1691 870 1511 300 73 48 chr3 100781068 100781184 -117255974 - L1ME1 LINE L1 -4807 1589 1477 209 57 29 0 chr3 100781184 100781219 -117255939 + (TTG)n Simple_repeat Simple_repeat 1 36 0 1511 300 73 48 chr3 100781219 100782535 -117254623 - L1ME1 LINE L1 -4919 1477 42 1688 182 28 36 chr3 100782753 100783115 -117254043 + MLT1A1 LTR MaLR 4 362 -3 236 310 15 2 chr3 100783682 100783755 -117253403 + MER91 DNA MER1_type 3 68 -72 446 232 205 46 chr3 100783763 100783914 -117253244 + MER5A DNA MER1_type 9 183 -6 668 292 67 18 chr3 100784630 100784914 -117252244 - MER76 LTR ERV -34 654 357 2169 148 77 34 chr3 100784943 100785455 -117251703 - MLT2A2 LTR ERVL 0 554 1 991 222 19 38 chr3 100785456 100785717 -117251441 - MER76 LTR ERV -432 256 1 23 0 0 0 chr3 100786020 100786043 -117251115 + AT_rich Low_complexity Low_complexity 1 23 0 3295 174 5 23 chr3 100788006 100788661 -117248497 - L1PA15 LINE L1 -9 6156 5514 866 115 39 0 chr3 100788661 100788791 -117248367 + AluSq/x SINE Alu 1 135 -177 1459 118 167 27 chr3 100788791 100789054 -117248104 + AluY SINE Alu 1 300 -11 1056 105 0 0 chr3 100789056 100789209 -117247949 - L1PA15 LINE L1 -640 5525 5373 1514 113 0 5 chr3 100789967 100790242 -117246916 + AluSg/x SINE Alu 72 345 0 22 0 0 0 chr3 100790674 100790696 -117246462 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr3 100791481 100791509 -117245649 + AT_rich Low_complexity Low_complexity 1 28 0 2129 126 0 0 chr3 100792535 100792836 -117244322 + AluSx SINE Alu 1 301 -11 364 378 0 0 chr3 100793372 100793499 -117243659 + MER5A DNA MER1_type 63 189 0 5243 58 5 0 chr3 100793807 100794476 -117242682 + L1PA4 LINE L1 5484 6155 0 21 0 0 0 chr3 100794488 100794509 -117242649 + AT_rich Low_complexity Low_complexity 1 21 0 235 171 29 43 chr3 100794607 100794677 -117242481 + (CAGAGA)n Simple_repeat Simple_repeat 4 72 0 413 335 71 7 chr3 100795403 100795709 -117241449 + MLT1J LTR MaLR 18 314 -132 236 362 63 78 chr3 100795852 100795960 -117241198 - L2 LINE L2 -3 3269 3161 604 229 79 47 chr3 100795960 100796174 -117240984 + MER58A DNA MER1_type 1 221 -3 236 362 63 78 chr3 100796174 100796413 -117240745 - L2 LINE L2 -111 3161 2927 364 354 17 22 chr3 100796702 100796883 -117240275 - MER5A DNA MER1_type -3 186 7 240 281 10 52 chr3 100797455 100797551 -117239607 - MIR SINE MIR -46 216 125 254 122 61 0 chr3 100797786 100797835 -117239323 + L1MB1 LINE L1 6108 6159 -9 231 213 21 0 chr3 100798475 100798522 -117238636 - LTR33A LTR ERVL -419 104 57 26 82 0 0 chr3 100798813 100798874 -117238284 + AT_rich Low_complexity Low_complexity 1 61 0 323 193 0 0 chr3 100799929 100799986 -117237172 + L1MC2 LINE L1 6251 6307 -37 317 235 51 61 chr3 100800063 100800161 -117236997 - MER5A DNA MER1_type -2 187 91 22 0 0 0 chr3 100800260 100800282 -117236876 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 100800935 100800956 -117236202 + AT_rich Low_complexity Low_complexity 1 21 0 906 234 135 95 chr3 100801354 100801784 -117235374 - MLT1H LTR MaLR -3 546 90 2120 109 13 0 chr3 100801784 100802086 -117235072 + AluY SINE Alu 1 306 -5 906 234 135 95 chr3 100802086 100802180 -117234978 - MLT1H LTR MaLR -459 90 1 621 341 122 31 chr3 100802263 100802805 -117234353 + L3 LINE CR1 430 1020 -557 338 39 39 20 chr3 100803084 100803135 -117234023 - MLT2A1 LTR ERVL 0 444 393 357 154 7 59 chr3 100803143 100803279 -117233879 + (TA)n Simple_repeat Simple_repeat 2 130 0 240 35 0 0 chr3 100803316 100803345 -117233813 + (TA)n Simple_repeat Simple_repeat 1 29 0 299 196 47 0 chr3 100803361 100803468 -117233690 + (TA)n Simple_repeat Simple_repeat 1 112 0 331 206 0 108 chr3 100803471 100803573 -117233585 + L1MC4 LINE L1 6613 6703 -1339 2456 80 42 89 chr3 100803578 100803705 -117233453 - MLT2A1 LTR ERVL -38 406 275 2377 84 0 3 chr3 100803705 100804015 -117233143 + AluY SINE Alu 1 309 -2 2456 80 42 89 chr3 100804015 100804313 -117232845 - MLT2A1 LTR ERVL -169 275 1 325 248 38 19 chr3 100804502 100804607 -117232551 + L1MCc LINE L1 24 130 -6293 756 294 62 29 chr3 100804693 100804964 -117232194 + L1MCc LINE L1 835 1124 -5299 1670 182 7 3 chr3 100804964 100805260 -117231898 + AluJb SINE Alu 5 301 -11 756 294 62 29 chr3 100805260 100805372 -117231786 + L1MCc LINE L1 1124 1231 -5192 3074 263 82 28 chr3 100805422 100805911 -117231247 + L1M4 LINE L1 2678 3139 -3007 1586 226 130 4 chr3 100805911 100806389 -117230769 - MER34 LTR ERV1 0 542 5 3074 263 82 28 chr3 100806389 100807391 -117229767 + L1M4 LINE L1 3139 4249 -1897 295 170 0 0 chr3 100807588 100807635 -117229523 + AluSc SINE Alu 38 84 -215 2362 90 0 0 chr3 100807635 100807934 -117229224 + AluY SINE Alu 1 299 -12 1670 100 0 17 chr3 100807937 100808178 -117228980 + AluSc SINE Alu 73 309 0 30 59 0 0 chr3 100808324 100808375 -117228783 + AT_rich Low_complexity Low_complexity 1 51 0 1878 116 45 58 chr3 100808791 100809101 -117228057 + AluSx SINE Alu 1 306 -6 379 238 119 93 chr3 100809232 100809425 -117227733 + MLT1K LTR MaLR 282 479 -109 21 36 0 0 chr3 100809672 100809700 -117227458 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr3 100809752 100809778 -117227380 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr3 100812109 100812135 -117225023 + AT_rich Low_complexity Low_complexity 1 26 0 2087 132 3 0 chr3 100812347 100812658 -117224500 - AluSp SINE Alu -1 312 1 24 67 0 0 chr3 100813120 100813165 -117223993 + AT_rich Low_complexity Low_complexity 1 45 0 1958 107 7 17 chr3 100813165 100813456 -117223702 - AluSx SINE Alu -24 288 1 355 344 39 28 chr3 100817974 100818154 -117219004 + MER5A DNA MER1_type 1 182 -7 291 261 0 15 chr3 100820081 100820146 -117217012 - L2 LINE L2 -16 3297 3234 195 227 0 23 chr3 100820370 100820414 -117216744 + MIR SINE MIR 87 129 -133 27 0 0 0 chr3 100822230 100822257 -117214901 + AT_rich Low_complexity Low_complexity 1 27 0 1650 208 53 11 chr3 100823259 100823639 -117213519 - MSTD LTR MaLR 0 396 1 1281 247 51 23 chr3 100823760 100824112 -117213046 - MER21B LTR ERV1 -11 852 491 437 0 0 19 chr3 100824121 100824175 -117212983 + (TTATA)n Simple_repeat Simple_repeat 2 54 0 1395 176 4 31 chr3 100824180 100824435 -117212723 - AluJb SINE Alu -27 285 38 1030 234 11 63 chr3 100824438 100824861 -117212297 - MER21B LTR ERV1 -375 488 12 33 73 0 0 chr3 100825325 100825393 -117211765 + AT_rich Low_complexity Low_complexity 1 68 0 486 220 9 0 chr3 100825411 100825520 -117211638 + AluJ SINE Alu 1 110 -202 290 192 0 0 chr3 100825554 100825606 -117211552 + A-rich Low_complexity Low_complexity 1 52 0 754 150 0 48 chr3 100825606 100825793 -117211365 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 414 230 14 14 chr3 100825805 100825944 -117211214 + GA-rich Low_complexity Low_complexity 2 140 0 3297 114 39 8 chr3 100825950 100826485 -117210673 + L1MA2 LINE L1 5753 6304 0 835 207 6 6 chr3 100826496 100826660 -117210498 + AluJ SINE Alu 119 282 -30 297 89 0 0 chr3 100826664 100826709 -117210449 + (CA)n Simple_repeat Simple_repeat 2 46 0 335 318 62 40 chr3 100827111 100827287 -117209871 - MIR3 SINE MIR -10 198 19 497 301 163 45 chr3 100828139 100828697 -117208461 + L1M4 LINE L1 3658 4281 -1865 21 57 0 0 chr3 100828773 100828808 -117208350 + AT_rich Low_complexity Low_complexity 1 35 0 437 316 25 0 chr3 100828833 100829111 -117208047 + L1M4 LINE L1 4412 4696 -1450 4472 239 52 51 chr3 100829384 100829673 -117207485 + L1M4 LINE L1 8 295 -6247 216 0 0 0 chr3 100829673 100829697 -117207461 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4472 239 52 51 chr3 100829697 100829893 -117207265 + L1M4 LINE L1 295 489 -6053 1422 153 127 8 chr3 100829893 100830161 -117206997 - AluSx SINE Alu -9 303 4 4472 239 52 51 chr3 100830161 100831200 -117205958 + L1M4 LINE L1 489 1535 -5007 513 236 130 0 chr3 100831199 100831360 -117205798 - L1M4c LINE L1 -4931 1453 1272 * 552 283 27 11 chr3 100831363 100831547 -117205611 + L1M4 LINE L1 1853 2039 -4607 1220 93 5 31 chr3 100831552 100831746 -117205412 + L1PA13 LINE L1 5975 6163 0 1248 123 49 21 chr3 100832507 100832750 -117204408 + AluSq SINE Alu 50 299 -14 2171 116 3 3 chr3 100832916 100833218 -117203940 - AluSx SINE Alu -10 302 1 1946 145 3 10 chr3 100833246 100833542 -117203616 + AluSg SINE Alu 1 294 -16 195 278 35 107 chr3 100834952 100835121 -117202037 + L2 LINE L2 2935 3091 -181 24 0 0 0 chr3 100835354 100835378 -117201780 + AT_rich Low_complexity Low_complexity 1 24 0 2250 127 13 21 chr3 100835978 100836356 -117200802 - THE1C LTR MaLR 0 375 1 8381 136 71 41 chr3 100836356 100837890 -117199268 - THE1C-int LTR MaLR 0 1580 1 2244 136 22 5 chr3 100837890 100838257 -117198901 - THE1C LTR MaLR 0 375 3 210 171 24 0 chr3 100838459 100838500 -117198658 + (TATG)n Simple_repeat Simple_repeat 3 44 0 2605 55 0 0 chr3 100839587 100839898 -117197260 + AluY SINE Alu 1 311 0 314 297 138 7 chr3 100840360 100840505 -117196653 + L1ME2 LINE L1 6001 6164 0 2174 230 67 25 chr3 100840565 100841004 -117196154 + MER74A LTR ERVL 11 477 -81 1892 164 3 3 chr3 100841004 100841309 -117195849 - AluSq SINE Alu -8 305 1 2174 230 67 25 chr3 100841309 100841395 -117195763 + MER74A LTR ERVL 477 558 0 1674 207 37 23 chr3 100841552 100841849 -117195309 - MLT1A1 LTR MaLR 0 365 61 1941 154 3 0 chr3 100841849 100842142 -117195016 - AluSx SINE Alu -13 299 6 1674 207 37 23 chr3 100842142 100842196 -117194962 - MLT1A1 LTR MaLR -304 61 9 2249 87 0 0 chr3 100842263 100842563 -117194595 + AluY SINE Alu 1 300 -11 1146 109 18 0 chr3 100842598 100842763 -117194395 + AluSq SINE Alu 133 300 -13 344 209 39 31 chr3 100845138 100845267 -117191891 + L1MB8 LINE L1 6049 6178 0 1890 92 0 0 chr3 100845267 100845528 -117191630 - L1PA7 LINE L1 -7 6147 5887 22 35 0 0 chr3 100846903 100846932 -117190226 + AT_rich Low_complexity Low_complexity 1 29 0 303 247 31 0 chr3 100847109 100847206 -117189952 + (TA)n Simple_repeat Simple_repeat 2 101 0 315 299 37 19 chr3 100847492 100847599 -117189559 - L2 LINE L2 -5 3267 3159 1428 270 14 50 chr3 100847804 100848241 -117188917 + LTR16C LTR ERVL 69 489 -2 299 25 25 0 chr3 100851779 100851819 -117185339 + (TG)n Simple_repeat Simple_repeat 2 42 0 199 140 70 0 chr3 100852028 100852085 -117185073 + (CTTAT)n Simple_repeat Simple_repeat 2 62 0 25 0 0 0 chr3 100852810 100852835 -117184323 + AT_rich Low_complexity Low_complexity 1 25 0 7550 33 1 8 chr3 100852864 100854368 -117182790 - L1PA3 LINE L1 0 6155 4657 346 265 59 48 chr3 100854473 100854628 -117182530 + MIR SINE MIR 15 172 -36 2044 255 12 57 chr3 100854628 100855208 -117181950 + MLT2B3 LTR ERVL 1 554 0 346 265 59 48 chr3 100855208 100855224 -117181934 + MIR SINE MIR 172 186 -22 25 0 0 0 chr3 100855318 100855343 -117181815 + AT_rich Low_complexity Low_complexity 1 25 0 184 273 0 0 chr3 100856393 100856437 -117180721 - L2 LINE L2 -498 2816 2773 216 273 0 45 chr3 100856702 100856768 -117180390 - L2 LINE L2 -67 3246 3184 214 333 50 58 chr3 100858476 100858596 -117178562 + L2 LINE L2 3154 3272 0 222 37 0 0 chr3 100859835 100859862 -117177296 + (CA)n Simple_repeat Simple_repeat 1 27 0 2043 182 13 5 chr3 100859869 100860243 -117176915 + MLT2D LTR ERVL 1 377 -37 299 149 0 0 chr3 100860355 100860402 -117176756 + MLT2D LTR ERVL 366 412 -2 21 0 0 0 chr3 100862756 100862777 -117174381 + AT_rich Low_complexity Low_complexity 1 21 0 249 0 0 0 chr3 100862808 100862839 -117174319 - L1PA8 LINE L1 -200 5972 5942 774 273 67 4 chr3 100862840 100863093 -117174065 - L2 LINE L2 -657 2657 2389 232 289 75 53 chr3 100863240 100863427 -117173731 - MER113 DNA MER1_type? -330 191 1 210 206 111 0 chr3 100863503 100863566 -117173592 + MIR SINE MIR 122 191 -71 180 0 0 0 chr3 100863581 100863601 -117173557 + (CAGTA)n Simple_repeat Simple_repeat 1 20 0 348 256 0 22 chr3 100863691 100863781 -117173377 + L1MC4 LINE L1 6614 6701 -1341 241 152 0 0 chr3 100863781 100863827 -117173331 - LTR66 LTR ERVL -171 439 394 323 324 48 19 chr3 100864996 100865101 -117172057 + L2 LINE L2 3150 3257 -15 257 219 0 31 chr3 100865469 100865533 -117171625 + (CATATA)n Simple_repeat Simple_repeat 3 64 0 1839 134 0 18 chr3 100866397 100866681 -117170477 - AluSc SINE Alu 0 309 31 5870 33 0 0 chr3 100867005 100867698 -117169460 + L1PA3 LINE L1 5460 6152 -3 32 43 0 0 chr3 100867698 100867744 -117169414 + AT_rich Low_complexity Low_complexity 1 46 0 251 345 117 12 chr3 100868178 100868349 -117168809 - MIR3 SINE MIR -11 197 9 350 282 15 69 chr3 100868953 100869084 -117168074 + MER91B DNA MER1_type 49 172 -18 181 367 89 0 chr3 100870373 100870452 -117166706 + MIR3 SINE MIR 70 155 -53 804 274 137 45 chr3 100870569 100871014 -117166144 + MLT1G1 LTR MaLR 1 546 -49 318 278 161 19 chr3 100871748 100871910 -117165248 + MER112 DNA MER1_type 64 248 -12 276 182 34 0 chr3 100873370 100873458 -117163700 + CT-rich Low_complexity Low_complexity 2 92 0 532 336 116 12 chr3 100873580 100873925 -117163233 + L2 LINE L2 2152 2532 -782 186 103 0 0 chr3 100874025 100874054 -117163104 + (TA)n Simple_repeat Simple_repeat 2 30 0 2241 93 3 3 chr3 100874291 100874592 -117162566 + AluY SINE Alu 3 303 -8 26 0 0 0 chr3 100874678 100874704 -117162454 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr3 100874923 100874948 -117162210 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr3 100875151 100875179 -117161979 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 100875275 100875296 -117161862 + AT_rich Low_complexity Low_complexity 1 21 0 195 313 0 0 chr3 100875393 100875441 -117161717 - MIR3 SINE MIR -10 198 151 21 0 0 0 chr3 100876276 100876297 -117160861 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 100876439 100876461 -117160697 + AT_rich Low_complexity Low_complexity 1 22 0 350 348 8 0 chr3 100877343 100877461 -117159697 - L2 LINE L2 -4 3309 3191 2749 211 2 21 chr3 100877545 100878067 -117159091 - MLT2B1 LTR ERVL -5 515 4 247 355 75 9 chr3 100878243 100878350 -117158808 + MER5B DNA MER1_type 1 114 -64 419 328 55 25 chr3 100878982 100879217 -117157941 + MIR SINE MIR 3 244 -18 2110 104 7 0 chr3 100879819 100880143 -117157015 - AluSc SINE Alu 0 326 1 2002 154 30 28 chr3 100880196 100880559 -117156599 - THE1B LTR MaLR 0 364 1 22 0 0 0 chr3 100883445 100883467 -117153691 + AT_rich Low_complexity Low_complexity 1 22 0 5326 171 39 17 chr3 100883568 100884748 -117152410 + L1MC1 LINE L1 5131 6333 0 330 26 0 0 chr3 100886142 100886181 -117150977 + (TG)n Simple_repeat Simple_repeat 1 39 0 224 75 0 25 chr3 100886181 100886221 -117150937 + (GA)n Simple_repeat Simple_repeat 2 40 0 2258 97 44 0 chr3 100886599 100886939 -117150219 + THE1A LTR MaLR 1 355 0 10769 104 14 26 chr3 100886940 100887436 -117149722 + THE1A-int LTR MaLR 2 502 -1078 2102 128 3 10 chr3 100887436 100887748 -117149410 + AluSx SINE Alu 1 310 -2 10769 104 14 26 chr3 100887748 100888849 -117148309 + THE1A-int LTR MaLR 502 1580 0 2610 96 6 0 chr3 100888849 100889202 -117147956 + THE1A LTR MaLR 1 355 0 327 319 55 38 chr3 100890733 100890971 -117146187 + L1ME LINE L1 2162 2403 -3993 309 266 102 55 chr3 100891298 100891627 -117145531 + L1ME LINE L1 5175 5554 -782 259 185 49 49 chr3 100891813 100891894 -117145264 + L1ME LINE L1 5796 5876 -314 234 190 0 78 chr3 100892002 100892216 -117144942 + (TTATA)n Simple_repeat Simple_repeat 1 197 0 28 62 0 52 chr3 100892310 100892407 -117144751 + AT_rich Low_complexity Low_complexity 1 92 0 181 321 12 12 chr3 100893218 100893299 -117143859 - MIR3 SINE MIR -1 207 127 23 0 0 0 chr3 100893467 100893490 -117143668 + AT_rich Low_complexity Low_complexity 1 23 0 1707 265 106 22 chr3 100893734 100894498 -117142660 - L1ME3A LINE L1 -30 6209 5370 52 30 0 0 chr3 100894584 100894650 -117142508 + AT_rich Low_complexity Low_complexity 1 66 0 399 117 76 7 chr3 100894664 100894809 -117142349 + (TA)n Simple_repeat Simple_repeat 1 155 0 296 142 34 125 chr3 100894826 100895002 -117142156 + (TATTG)n Simple_repeat Simple_repeat 3 162 0 * 416 236 60 0 chr3 100894882 100895219 -117141939 + (TTATA)n Simple_repeat Simple_repeat 1 357 0 514 55 10 119 chr3 100895223 100895424 -117141734 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 324 140 80 0 chr3 100895427 100895527 -117141631 + (TA)n Simple_repeat Simple_repeat 1 108 0 19035 156 25 53 chr3 100895623 100899343 -117137815 + L1MA3 LINE L1 26 3640 -3925 6382 149 20 5 chr3 100899345 100899403 -117137755 + L1MA3 LINE L1 6340 6396 -1328 216 0 0 0 chr3 100899403 100899427 -117137731 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 6382 149 20 5 chr3 100899427 100900731 -117136427 + L1MA3 LINE L1 6396 7724 0 964 290 66 50 chr3 100900792 100901286 -117135872 - L1ME3A LINE L1 -931 5284 4768 2397 119 24 14 chr3 100901286 100901657 -117135501 + THE1C LTR MaLR 1 375 0 964 290 66 50 chr3 100901657 100902041 -117135117 - L1ME3A LINE L1 -1447 4768 4392 613 286 130 5 chr3 100902081 100902666 -117134492 - L1MEc LINE L1 -3558 2657 2029 443 298 59 74 chr3 100902818 100902955 -117134203 - L1MEc LINE L1 -4591 1805 1668 1569 116 0 4 chr3 100902955 100903180 -117133978 + AluSx SINE Alu 54 277 -35 443 298 59 74 chr3 100903180 100903621 -117133537 - L1MEc LINE L1 -4728 1668 1246 1228 220 110 0 chr3 100903621 100903930 -117133228 + MER2 DNA MER2_type 1 343 -1 443 298 59 74 chr3 100903930 100904382 -117132776 - L1MEc LINE L1 -5150 1246 789 207 125 0 0 chr3 100905563 100905603 -117131555 + (TA)n Simple_repeat Simple_repeat 2 41 0 260 217 0 0 chr3 100905687 100905747 -117131411 + (TA)n Simple_repeat Simple_repeat 1 60 0 1748 267 78 29 chr3 100905788 100906377 -117130781 - MER21B LTR ERV1 -109 754 137 23 0 0 0 chr3 100906457 100906480 -117130678 + AT_rich Low_complexity Low_complexity 1 23 0 325 229 105 23 chr3 100906511 100906649 -117130509 + MIR SINE MIR 27 172 -68 213 231 51 39 chr3 100907380 100907458 -117129700 + GA-rich Low_complexity Low_complexity 1 79 0 21 0 0 0 chr3 100908552 100908573 -117128585 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr3 100908885 100908923 -117128235 + AT_rich Low_complexity Low_complexity 1 38 0 196 313 133 12 chr3 100909017 100909100 -117128058 - L2 LINE L2 -31 3282 3190 425 273 61 0 chr3 100909473 100909605 -117127553 - L2 LINE L2 0 3313 3174 353 258 92 26 chr3 100909779 100910152 -117127006 + MLT1G1 LTR MaLR 156 587 -8 449 281 99 51 chr3 100910159 100910493 -117126665 - L2 LINE L2 -129 3184 2835 258 304 29 20 chr3 100912509 100912611 -117124547 + 5S rRNA rRNA 9 111 -10 1495 224 26 6 chr3 100912822 100913171 -117123987 - L1MB3 LINE L1 -9 6174 5819 2136 119 3 0 chr3 100913171 100913474 -117123684 - AluSx SINE Alu -8 304 1 323 278 191 0 chr3 100913484 100913646 -117123512 - L1MB3 LINE L1 -1200 4946 4754 227 178 0 0 chr3 100914259 100914304 -117122854 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 25 31 0 0 chr3 100915064 100915096 -117122062 + AT_rich Low_complexity Low_complexity 1 32 0 359 283 253 0 chr3 100915781 100915947 -117121211 - MIR SINE MIR -3 259 52 1601 267 26 40 chr3 100916101 100916606 -117120552 + L1MDa LINE L1 18 515 -6025 1293 117 89 0 chr3 100916867 100917081 -117120077 + L1PA8 LINE L1 5938 6170 -2 34 24 0 0 chr3 100917432 100917473 -117119685 + AT_rich Low_complexity Low_complexity 1 41 0 1558 262 29 43 chr3 100918499 100918987 -117118171 + L1 LINE L1 358 838 -6728 9784 184 39 12 chr3 100918989 100921124 -117116034 + L1 LINE L1 4478 6670 -895 6683 138 8 38 chr3 100921135 100922260 -117114898 + THE1-int LTR MaLR 259 1349 -231 5887 155 39 16 chr3 100922259 100922480 -117114678 + L1M2b LINE L1 2179 2394 -5171 * 1949 165 25 22 chr3 100922480 100922843 -117114315 - THE1B LTR MaLR 0 364 1 5887 155 39 16 chr3 100922843 100923831 -117113327 + L1M2b LINE L1 2394 3415 -4150 28 61 0 0 chr3 100923967 100924016 -117113142 + AT_rich Low_complexity Low_complexity 1 49 0 268 342 36 0 chr3 100924328 100924439 -117112719 + MIR SINE MIR 47 161 -101 1956 105 4 0 chr3 100925175 100925441 -117111717 + AluSx SINE Alu 20 286 -26 1403 193 3 31 chr3 100925466 100925756 -117111402 + AluJb SINE Alu 3 284 -18 22 0 0 0 chr3 100926374 100926396 -117110762 + AT_rich Low_complexity Low_complexity 1 22 0 279 279 9 36 chr3 100928324 100928435 -117108723 - L1MB3 LINE L1 -2281 3865 3758 233 286 118 17 chr3 100930688 100930807 -117106351 - MIR SINE MIR -108 154 24 262 294 15 0 chr3 100931067 100931135 -117106023 - MIR3 SINE MIR -48 160 92 391 262 14 13 chr3 100931458 100931600 -117105558 - LTR37A LTR ERV1 -31 437 278 1147 249 72 72 chr3 100931659 100932124 -117105034 + L1M4b LINE L1 4 532 -6327 1789 152 62 18 chr3 100932559 100932895 -117104263 + MLT1A1 LTR MaLR 13 363 -2 28 29 0 0 chr3 100932967 100933002 -117104156 + AT_rich Low_complexity Low_complexity 1 35 0 2232 78 0 47 chr3 100933483 100933803 -117103355 + AluY SINE Alu 1 305 -6 22 0 0 0 chr3 100935430 100935452 -117101706 + AT_rich Low_complexity Low_complexity 1 22 0 37 69 0 0 chr3 100937641 100937713 -117099445 + AT_rich Low_complexity Low_complexity 1 72 0 234 0 0 0 chr3 100937862 100937888 -117099270 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 7564 24 0 2 chr3 100937888 100939480 -117097678 - L1PA3 LINE L1 -10 6145 4557 997 136 23 0 chr3 100939596 100939772 -117097386 + THE1B-int LTR MaLR 1401 1580 0 1553 167 113 27 chr3 100939772 100940107 -117097051 + THE1B LTR MaLR 1 364 0 9419 210 16 11 chr3 100940108 100942318 -117094840 + L1 LINE L1 2118 4337 -1809 235 65 0 0 chr3 100942318 100942349 -117094809 - L1PB2 LINE L1 -163 5988 5958 1049 246 41 17 chr3 100942491 100942678 -117094480 + L1M4b LINE L1 660 858 -6001 2828 171 98 12 chr3 100942678 100943241 -117093917 + LTR36 LTR ERV1 1 611 0 1049 246 41 17 chr3 100943241 100943346 -117093812 + L1M4b LINE L1 858 959 -5900 3212 150 14 48 chr3 100943346 100943934 -117093224 + MER50 LTR ERV1 1 568 -166 3264 121 53 36 chr3 100943934 100944514 -117092644 - LTR8 LTR ERV1 0 691 102 1079 110 0 0 chr3 100944671 100944816 -117092342 - LTR8 LTR ERV1 -546 145 1 799 139 73 0 chr3 100944816 100944953 -117092205 + MER50 LTR ERV1 565 711 -23 2205 236 70 19 chr3 100944954 100945529 -117091629 + L1M4b LINE L1 956 1559 -5300 6876 238 15 17 chr3 100945553 100946698 -117090460 + L1PBa LINE L1 3 1149 -5714 1952 140 67 17 chr3 100946698 100947055 -117090103 - THE1C LTR MaLR 0 375 1 9113 127 75 8 chr3 100947055 100948536 -117088622 - THE1C-int LTR MaLR 0 1580 1 2379 129 13 8 chr3 100948536 100948909 -117088249 - THE1C LTR MaLR 0 375 1 6876 238 15 17 chr3 100948909 100949401 -117087757 + L1PBa LINE L1 1146 1639 -5224 1748 253 29 5 chr3 100949372 100949755 -117087403 + L1PB2 LINE L1 660 1051 -5812 * 2199 124 30 54 chr3 100949756 100950128 -117087030 - THE1B LTR MaLR 0 364 2 10103 119 40 18 chr3 100950129 100951273 -117085885 - THE1B-int LTR MaLR 0 1580 392 2040 164 11 6 chr3 100951273 100951626 -117085532 - THE1A LTR MaLR 0 355 1 10103 119 40 18 chr3 100951626 100952027 -117085131 - THE1B-int LTR MaLR -1188 392 1 2295 134 31 14 chr3 100952027 100952385 -117084773 - THE1B LTR MaLR 0 364 1 1715 167 4 0 chr3 100952385 100952649 -117084509 + L1PB2 LINE L1 1051 1315 -5548 242 135 0 0 chr3 100952651 100952688 -117084470 + L1PB2 LINE L1 2935 2971 -3892 * 1334 194 6 65 chr3 100952657 100953013 -117084145 + L1M4b LINE L1 3036 3370 -3587 6531 184 31 17 chr3 100953233 100954278 -117082880 + L1PB2 LINE L1 4381 5410 -1552 210 37 0 0 chr3 100954278 100954305 -117082853 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6531 184 31 17 chr3 100954305 100955018 -117082140 + L1PB2 LINE L1 5410 6111 -851 319 31 77 0 chr3 100955018 100955083 -117082075 + (TA)n Simple_repeat Simple_repeat 2 71 0 6531 184 31 17 chr3 100955083 100955826 -117081332 + L1PB2 LINE L1 6111 6908 -54 1908 152 0 13 chr3 100955826 100956128 -117081030 + AluSx SINE Alu 1 298 -14 6531 184 31 17 chr3 100956128 100956182 -117080976 + L1PB2 LINE L1 6908 6960 -2 712 208 49 99 chr3 100956262 100956546 -117080612 - LTR37B LTR ERV1 -193 275 6 259 273 190 41 chr3 100956919 100957040 -117080118 - MER5A DNA MER1_type -3 186 48 1166 210 95 33 chr3 100957140 100957507 -117079651 - Charlie5 DNA MER1_type 0 2624 2235 506 195 10 0 chr3 100957504 100957635 -117079523 - Charlie5 DNA MER1_type -2495 117 1 * 681 236 91 0 chr3 100957779 100957944 -117079214 - MER63A DNA MER1_type -29 181 2 549 315 160 30 chr3 100958015 100958465 -117078693 + L2 LINE L2 2778 3299 -14 438 373 73 21 chr3 100958471 100958895 -117078263 - L2 LINE L2 -754 2560 2115 1743 91 12 0 chr3 100959420 100959662 -117077496 + AluY SINE Alu 61 305 -6 180 0 0 0 chr3 100959744 100959764 -117077394 + (TG)n Simple_repeat Simple_repeat 1 20 0 325 242 44 11 chr3 100959835 100959926 -117077232 - L1MC4 LINE L1 -1339 6703 6610 2132 240 60 37 chr3 100959936 100960895 -117076263 + L1ME1 LINE L1 5155 6141 -25 2088 137 0 3 chr3 100961049 100961342 -117075816 - AluSx SINE Alu -20 292 1 344 250 34 62 chr3 100961614 100961790 -117075368 + MER58C DNA MER1_type 31 201 -14 294 96 19 39 chr3 100961785 100961837 -117075321 + MER58C DNA MER1_type 160 210 -5 * 871 311 47 40 chr3 100962711 100963113 -117074045 + HERV16 LTR ERVL 718 1122 -3874 1894 215 80 22 chr3 100963144 100963633 -117073525 - MLT2B1 LTR ERVL 0 520 4 7243 219 32 50 chr3 100963673 100966362 -117070796 + L1MB3 LINE L1 3202 5831 -352 2075 144 0 0 chr3 100966362 100966675 -117070483 + AluSq SINE Alu 1 313 0 517 239 37 32 chr3 100967381 100967569 -117069589 + MER5A DNA MER1_type 1 189 0 180 0 0 0 chr3 100968147 100968167 -117068991 + (T)n Simple_repeat Simple_repeat 1 20 0 25 0 0 0 chr3 100968256 100968281 -117068877 + AT_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr3 100968871 100968892 -117068266 + (CCA)n Simple_repeat Simple_repeat 1 21 0 226 365 28 0 chr3 100970262 100970369 -117066789 - L2 LINE L2 -802 2512 2403 2865 3 0 3 chr3 100970381 100970693 -117066465 + AluYa5 SINE Alu 1 311 0 26 0 0 0 chr3 100970693 100970719 -117066439 + AT_rich Low_complexity Low_complexity 1 26 0 252 304 14 0 chr3 100971421 100971490 -117065668 - MER5A DNA MER1_type 0 189 120 276 295 0 13 chr3 100973811 100973889 -117063269 + MER63 DNA MER1_type 5 707 -129 252 86 0 0 chr3 100974024 100974059 -117063099 + (TA)n Simple_repeat Simple_repeat 2 36 0 369 196 19 9 chr3 100974072 100974179 -117062979 + (TA)n Simple_repeat Simple_repeat 1 108 0 234 197 0 14 chr3 100974179 100974250 -117062908 - L1MCa LINE L1 -4362 2064 1995 181 26 26 77 chr3 100974327 100974366 -117062792 + (TAA)n Simple_repeat Simple_repeat 3 39 0 214 326 57 64 chr3 100974540 100974681 -117062477 - MIR3 SINE MIR -6 202 63 731 208 33 0 chr3 100974936 100975119 -117062039 - MER53 DNA DNA 0 189 1 1367 132 18 0 chr3 100975615 100975834 -117061324 + L1P LINE L1 3343 3565 -2581 1482 159 3 44 chr3 100976437 100976501 -117060657 - L1PB4 LINE L1 -1 6155 6090 558 24 0 36 chr3 100976501 100976584 -117060574 + (TA)n Simple_repeat Simple_repeat 1 80 0 1482 159 3 44 chr3 100976584 100976814 -117060344 - L1PB4 LINE L1 -66 6090 5873 389 186 0 0 chr3 100976814 100976884 -117060274 + L1P LINE L1 3416 3485 -2661 315 0 0 0 chr3 100976913 100976948 -117060210 + (TC)n Simple_repeat Simple_repeat 1 35 0 846 166 11 57 chr3 100976948 100977115 -117060043 + THE1B LTR MaLR 201 361 -3 1781 262 8 2 chr3 100977123 100977608 -117059550 - L1P LINE L1 -3106 4478 3991 4502 240 46 31 chr3 100977892 100979268 -117057890 - L1PA15-16 LINE L1 -3444 4140 2720 216 0 0 0 chr3 100979268 100979292 -117057866 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4502 240 46 31 chr3 100979292 100979546 -117057612 - L1PA15-16 LINE L1 -4864 2720 2471 3364 279 60 8 chr3 100979604 100980547 -117056611 - L1PA15-16 LINE L1 -5651 1930 939 2301 170 12 12 chr3 100980557 100980986 -117056172 - L1PB4 LINE L1 -373 5783 5355 24 53 0 0 chr3 100981239 100981277 -117055881 + AT_rich Low_complexity Low_complexity 1 38 0 1017 289 106 61 chr3 100981789 100982553 -117054605 - L1ME LINE L1 -4074 2187 1459 2051 108 7 3 chr3 100982553 100982840 -117054318 + AluSx SINE Alu 11 298 -14 1017 289 106 61 chr3 100982840 100984099 -117053059 - L1ME LINE L1 -4802 1459 19 578 267 11 52 chr3 100984687 100984773 -117052385 - L1MA9 LINE L1 -46 6266 6178 2332 116 37 8 chr3 100984773 100985127 -117052031 - THE1B LTR MaLR 0 364 1 578 267 11 52 chr3 100985127 100985310 -117051848 - L1MA9 LINE L1 -134 6178 6008 189 0 0 0 chr3 100986084 100986105 -117051053 + (TA)n Simple_repeat Simple_repeat 2 22 0 1553 134 0 4 chr3 100986664 100986896 -117050262 + AluSg/x SINE Alu 75 305 -5 382 221 77 0 chr3 100986896 100987000 -117050158 - L1MA6 LINE L1 -182 6118 6007 5120 261 56 59 chr3 100987005 100989650 -117047508 - L1MEc LINE L1 -964 5251 2614 2250 197 28 59 chr3 100989667 100990097 -117047061 + L1PBb LINE L1 452 851 -5353 2178 131 0 3 chr3 100990097 100990409 -117046749 + AluSx SINE Alu 1 311 -1 2250 197 28 59 chr3 100990409 100990680 -117046478 + L1PBb LINE L1 851 1129 -5075 580 214 9 0 chr3 100990790 100990902 -117046256 + Tigger1 DNA MER2_type 2120 2232 -186 919 182 24 6 chr3 100990926 100991096 -117046062 - L1PB4 LINE L1 -14 6142 5970 1270 131 0 0 chr3 100991096 100991272 -117045886 - AluSg/x SINE Alu -12 300 125 3278 151 16 3 chr3 100991272 100992244 -117044914 - L1PB4 LINE L1 -382 5786 4801 1810 218 26 9 chr3 100992245 100992839 -117044319 + L1 LINE L1 4347 4967 -1179 315 198 48 24 chr3 100993107 100993233 -117043925 - L1MEc LINE L1 -4187 2209 2081 2104 281 71 28 chr3 100993473 100994476 -117042682 - L1MEc LINE L1 -5127 1269 202 538 379 44 3 chr3 100996177 100996475 -117040683 + L2 LINE L2 95 404 -2910 505 322 238 28 chr3 100996565 100997306 -117039852 + L2 LINE L2 1681 2578 -736 203 339 127 42 chr3 100997306 100997424 -117039734 + MER91A DNA MER1_type 1 128 -68 23 0 0 0 chr3 100997443 100997466 -117039692 + AT_rich Low_complexity Low_complexity 1 23 0 304 309 79 62 chr3 100997535 100997713 -117039445 + L2 LINE L2 2565 2745 -569 403 254 130 14 chr3 100998013 100998151 -117039007 + L2 LINE L2 3158 3311 -2 23 54 0 0 chr3 100998266 100998303 -117038855 + AT_rich Low_complexity Low_complexity 1 37 0 380 318 73 22 chr3 100999031 100999210 -117037948 + MIR SINE MIR 49 236 -26 265 183 0 32 chr3 100999314 100999407 -117037751 + L1M1 LINE L1 3360 3449 -4116 706 208 6 6 chr3 100999458 100999631 -117037527 + L1MA4 LINE L1 6123 6295 -5 234 235 163 48 chr3 100999967 101000133 -117037025 + L1ME LINE L1 5618 5802 -360 21 36 0 0 chr3 101000768 101000796 -117036362 + AT_rich Low_complexity Low_complexity 1 28 0 26 93 0 0 chr3 101001335 101001410 -117035748 + AT_rich Low_complexity Low_complexity 1 75 0 228 333 36 29 chr3 101002443 101002581 -117034577 - MIR SINE MIR -35 227 89 425 320 40 11 chr3 101003628 101003950 -117033208 - MLT1L LTR MaLR -69 546 155 433 225 29 13 chr3 101004809 101005125 -117032033 + (TA)n Simple_repeat Simple_repeat 1 321 0 226 351 30 45 chr3 101006418 101006552 -117030606 - L2 LINE L2 -5 3267 3136 221 194 0 28 chr3 101006940 101007012 -117030146 + GA-rich Low_complexity Low_complexity 1 70 0 365 306 36 46 chr3 101008130 101008326 -117028832 - MIR SINE MIR 0 262 69 452 143 12 0 chr3 101008706 101008790 -117028368 + GA-rich Low_complexity Low_complexity 1 85 0 822 293 74 52 chr3 101009145 101009661 -117027497 - MLT1H LTR MaLR -2 547 21 215 204 37 0 chr3 101009701 101009755 -117027403 + L2 LINE L2 1649 1704 -1610 1777 165 64 36 chr3 101009777 101010135 -117027023 + THE1C LTR MaLR 8 375 0 833 236 64 4 chr3 101010159 101010409 -117026749 + L2 LINE L2 1770 2034 -1280 432 316 13 13 chr3 101010409 101010561 -117026597 + LTR16B LTR ERVL 3 154 -310 4917 181 42 33 chr3 101010693 101012694 -117024464 - L1MA9 LINE L1 0 6312 4284 2032 94 0 0 chr3 101012694 101012971 -117024187 - L1PA7 LINE L1 -89 6065 5789 220 337 48 0 chr3 101012980 101013063 -117024095 + MIR SINE MIR 126 212 -50 35586 59 29 2 chr3 101014223 101018865 -117018293 + L1P LINE L1 1 4766 -1380 4901 237 24 23 chr3 101018924 101019107 -117018051 - L1MA9 LINE L1 -1803 4343 4162 1971 115 11 0 chr3 101019107 101019409 -117017749 - AluSx SINE Alu 0 305 1 4901 237 24 23 chr3 101019409 101020665 -117016493 - L1MA9 LINE L1 -1984 4162 2902 305 245 25 69 chr3 101021833 101021992 -117015166 + MER113 DNA MER1_type? 50 201 -320 733 309 77 43 chr3 101021992 101022368 -117014790 + MLT1J LTR MaLR 3 391 -120 1304 187 132 3 chr3 101022369 101022813 -117014345 + MER74A LTR ERVL 2 558 0 234 133 100 33 chr3 101022813 101022873 -117014285 + MLT1J LTR MaLR 390 453 -58 5064 45 8 0 chr3 101022979 101023644 -117013514 - L1PA5 LINE L1 -281 5873 5205 1475 209 108 39 chr3 101025993 101026501 -117010657 - MLT1H LTR MaLR -3 546 4 258 279 38 13 chr3 101027531 101027610 -117009548 - MIR SINE MIR -70 192 112 278 251 1 37 chr3 101028991 101029078 -117008080 + MER58 DNA MER1_type 128 2418 -2 348 320 115 43 chr3 101029093 101029440 -117007718 + L1M4c LINE L1 1265 1636 -4748 806 237 51 15 chr3 101030587 101030861 -117006297 + L1MB3 LINE L1 5898 6181 -2 1104 139 6 0 chr3 101031012 101031178 -117005980 + AluSg/x SINE Alu 133 299 -11 2472 183 48 11 chr3 101031193 101031890 -117005268 + L1MD1 LINE L1 5317 6081 -161 1249 202 64 0 chr3 101032282 101032564 -117004594 + L1MA5 LINE L1 6001 6300 0 730 211 15 5 chr3 101032603 101032802 -117004356 - L1M4c LINE L1 -4031 2353 2153 958 205 26 46 chr3 101032805 101033107 -117004051 - AluY SINE Alu -1 300 5 6314 138 17 2 chr3 101033425 101034417 -117002741 + THE1-int LTR MaLR 197 1203 -377 639 217 45 19 chr3 101035742 101035899 -117001259 + MLT1J LTR MaLR 345 505 0 1360 243 145 50 chr3 101035908 101036627 -117000531 - HAL1 LINE L1 -1009 1498 712 238 273 85 51 chr3 101036670 101036846 -117000312 - HAL1 LINE L1 -1880 627 446 200 239 22 0 chr3 101037065 101037111 -117000047 + L2 LINE L2 3226 3272 0 1046 221 109 39 chr3 101037438 101037750 -116999408 + MSTD LTR MaLR 1 334 -62 1414 206 15 4 chr3 101039387 101039654 -116997504 + AluJb SINE Alu 28 297 -15 1497 139 119 12 chr3 101039656 101039908 -116997250 + AluSg SINE Alu 1 279 -31 9575 182 32 32 chr3 101040459 101040714 -116996444 - L1PA15-16 LINE L1 -4183 2666 2413 1832 173 17 0 chr3 101040714 101041015 -116996143 + AluSq SINE Alu 1 306 -7 9575 182 32 32 chr3 101041015 101043755 -116993403 - L1PA15-16 LINE L1 -4436 2413 3 785 306 138 28 chr3 101043759 101043793 -116993365 - L2 LINE L2 -952 2362 2333 1906 181 28 11 chr3 101043793 101044152 -116993006 + MLT1A1 LTR MaLR 1 365 0 785 306 138 28 chr3 101044152 101044551 -116992607 - L2 LINE L2 -981 2333 1881 1008 348 75 32 chr3 101045029 101045745 -116991413 + L2 LINE L2 950 1696 -1618 219 319 0 0 chr3 101045787 101045856 -116991302 + L2 LINE L2 1782 1850 -1464 562 204 81 29 chr3 101045858 101046030 -116991128 + L1ME2 LINE L1 5984 6164 0 1500 244 56 14 chr3 101047557 101048003 -116989155 - MLT1C LTR MaLR -2 465 1 486 281 33 0 chr3 101048228 101048381 -116988777 - L1MD2 LINE L1 0 6359 6202 406 278 6 43 chr3 101048390 101048524 -116988634 - L1MD2 LINE L1 -157 6085 6007 2128 132 0 0 chr3 101048741 101049036 -116988122 - AluSg SINE Alu -15 295 1 6149 99 29 7 chr3 101049043 101050370 -116986788 - L1PA10 LINE L1 -10 6158 4801 5358 182 8 21 chr3 101050371 101051264 -116985894 + L1PA16 LINE L1 4347 5250 -916 2072 153 31 19 chr3 101051264 101051624 -116985534 - THE1B LTR MaLR 0 364 1 11350 104 8 7 chr3 101051624 101053203 -116983955 - THE1B-int LTR MaLR 0 1580 1 1888 181 31 19 chr3 101053203 101053563 -116983595 - THE1B LTR MaLR 0 364 1 5358 182 8 21 chr3 101053563 101054493 -116982665 + L1PA16 LINE L1 5247 6149 -17 24 32 0 0 chr3 101054497 101054528 -116982630 + AT_rich Low_complexity Low_complexity 1 31 0 1146 342 76 7 chr3 101054528 101054987 -116982171 + L2 LINE L2 2349 2839 -475 900 126 0 0 chr3 101055009 101055136 -116982022 - THE1B LTR MaLR -165 199 73 626 304 41 0 chr3 101055138 101055309 -116981849 + L2 LINE L2 2859 3036 -277 1064 97 0 0 chr3 101056506 101056640 -116980518 + AluSc SINE Alu 1 134 -175 497 119 0 12 chr3 101056977 101057061 -116980097 + (TTCC)n Simple_repeat Simple_repeat 4 86 0 189 94 0 0 chr3 101057092 101057124 -116980034 + (CTG)n Simple_repeat Simple_repeat 1 32 0 975 121 6 11 chr3 101057125 101057299 -116979859 + (TTC)n Simple_repeat Simple_repeat 2 174 0 2098 173 21 3 chr3 101057301 101057676 -116979482 - L1PA15 LINE L1 -15 6150 5769 4634 184 43 38 chr3 101058042 101059838 -116977320 - L1PA15 LINE L1 -368 5798 3997 1906 174 40 11 chr3 101062324 101062703 -116974455 - MLT1B LTR MaLR 0 390 1 333 357 39 16 chr3 101062816 101062945 -116974213 + L2 LINE L2 3141 3272 0 253 258 3 0 chr3 101063086 101063156 -116974002 - Charlie8 DNA MER1_type -995 1422 1368 252 304 14 0 chr3 101065641 101065710 -116971448 + MER5A DNA MER1_type 120 189 0 2152 116 0 3 chr3 101066431 101066741 -116970417 - AluYa5 SINE Alu 0 311 3 216 365 28 0 chr3 101066756 101066863 -116970295 + L2 LINE L2 2403 2512 -802 2865 3 0 3 chr3 101067235 101067547 -116969611 - AluYa5 SINE Alu 0 311 1 226 365 28 0 chr3 101067560 101067667 -116969491 + L2 LINE L2 2403 2512 -802 189 0 0 0 chr3 101069037 101069058 -116968100 + (TGG)n Simple_repeat Simple_repeat 1 21 0 25 0 0 0 chr3 101069648 101069673 -116967485 + AT_rich Low_complexity Low_complexity 1 25 0 198 0 0 0 chr3 101069762 101069784 -116967374 + (A)n Simple_repeat Simple_repeat 1 22 0 517 239 37 32 chr3 101070362 101070550 -116966608 - MER5A DNA MER1_type 0 189 1 2135 131 0 0 chr3 101071256 101071569 -116965589 - AluSq SINE Alu 0 313 1 1109 228 11 52 chr3 101071777 101072124 -116965034 - L1MD3 LINE L1 -14 7981 7649 1782 142 3 82 chr3 101072238 101072568 -116964590 + AluSx SINE Alu 1 304 -8 2000 140 3 19 chr3 101072695 101073003 -116964155 + AluSx SINE Alu 3 305 -7 320 309 28 39 chr3 101075021 101075202 -116961956 - MLT1J2 LTR MaLR 0 450 272 926 216 0 28 chr3 101075839 101076020 -116961138 + Tigger7 DNA MER2_type 1 176 -2311 1147 93 0 0 chr3 101076020 101076181 -116960977 - L1P LINE L1 -1056 5090 4930 428 211 126 0 chr3 101076185 101076280 -116960878 + Tigger7 DNA MER2_type 157 263 -287 349 114 291 0 chr3 101076278 101076357 -116960801 + Tigger7 DNA MER2_type 2485 2586 -1 * 2500 150 21 4 chr3 101078191 101078665 -116958493 - L1MA5 LINE L1 0 6300 5819 1765 212 29 24 chr3 101078665 101079331 -116957827 - L1 LINE L1 -3676 3172 2502 * 4378 218 11 2 chr3 101079322 101080272 -116956886 + L1P LINE L1 3388 4345 -1801 4551 155 19 2 chr3 101080274 101081076 -116956082 + L1P LINE L1 4542 5356 -790 44 20 0 0 chr3 101081181 101081232 -116955926 + AT_rich Low_complexity Low_complexity 1 51 0 1608 195 70 28 chr3 101081684 101082084 -116955074 - MSTC LTR MaLR 0 428 12 500 313 66 50 chr3 101082975 101083295 -116953863 + L2 LINE L2 788 1112 -2202 337 288 36 50 chr3 101083299 101083438 -116953720 + L2 LINE L2 1500 1636 -1678 791 319 120 60 chr3 101083575 101084308 -116952850 - L2 LINE L2 -2281 1033 257 224 179 60 0 chr3 101084836 101084920 -116952238 + (TA)n Simple_repeat Simple_repeat 1 89 0 1199 101 6 0 chr3 101086032 101086190 -116950968 - AluSp SINE Alu -154 159 1 358 155 250 12 chr3 101086524 101086608 -116950550 - MLT2B1 LTR ERVL -10 510 407 314 264 123 28 chr3 101087310 101087416 -116949742 - MIR SINE MIR -1 261 146 22 35 0 0 chr3 101087728 101087757 -116949401 + AT_rich Low_complexity Low_complexity 1 29 0 2187 83 3 55 chr3 101087832 101088158 -116949000 + AluSq SINE Alu 5 313 0 977 198 112 38 chr3 101088571 101088885 -116948273 + L1MC3 LINE L1 6746 7082 -703 259 256 0 24 chr3 101088885 101088967 -116948191 + MLT1F1 LTR MaLR 22 101 -466 1274 224 48 0 chr3 101088968 101089240 -116947918 + L1MC3 LINE L1 7166 7450 -335 1682 163 3 20 chr3 101089452 101089747 -116947411 - AluJo SINE Alu -22 290 1 25 95 0 0 chr3 101090035 101090109 -116947049 + AT_rich Low_complexity Low_complexity 1 74 0 978 152 13 0 chr3 101094539 101094690 -116942468 + MLT1A1 LTR MaLR 166 318 -47 319 307 44 58 chr3 101094763 101094968 -116942190 - L1MC4a LINE L1 -1553 6255 6054 209 283 19 0 chr3 101095053 101095106 -116942052 + L2 LINE L2 2416 2469 -845 1898 125 0 21 chr3 101095400 101095710 -116941448 - AluSx SINE Alu 0 311 8 1578 212 0 10 chr3 101096542 101096830 -116940328 + AluJo SINE Alu 2 286 -26 33 0 0 0 chr3 101096832 101096865 -116940293 + AT_rich Low_complexity Low_complexity 1 33 0 1968 66 0 3 chr3 101096997 101097257 -116939901 + L1PA5 LINE L1 5751 6006 -148 2379 150 36 7 chr3 101097523 101097937 -116939221 + MSTA LTR MaLR 3 428 0 830 187 62 7 chr3 101098245 101098423 -116938735 - LTR40b LTR ERVL 0 462 302 482 339 93 4 chr3 101098977 101099213 -116937945 + MIR SINE MIR 5 261 -1 203 414 81 0 chr3 101099274 101099373 -116937785 + L2 LINE L2 3118 3224 -48 218 222 0 19 chr3 101099414 101099468 -116937690 + GA-rich Low_complexity Low_complexity 4 56 0 181 298 96 11 chr3 101100128 101100222 -116936936 - L3 LINE CR1 -16 1561 1460 231 200 22 0 chr3 101101286 101101331 -116935827 + (CA)n Simple_repeat Simple_repeat 2 47 0 643 83 0 73 chr3 101101912 101102021 -116935137 - AluSg/x SINE Alu -14 296 196 216 97 0 0 chr3 101102057 101102088 -116935070 + (T)n Simple_repeat Simple_repeat 1 31 0 851 222 39 43 chr3 101102390 101102620 -116934538 - MIR SINE MIR -32 230 2 236 197 66 0 chr3 101102837 101102898 -116934260 + MIR SINE MIR 77 141 -121 283 351 42 12 chr3 101103069 101103234 -116933924 + MER5A DNA MER1_type 20 189 0 187 280 154 63 chr3 101103269 101103412 -116933746 + MER5B DNA MER1_type 23 178 0 306 312 0 13 chr3 101105295 101105372 -116931786 - MER5C DNA MER1_type -248 76 1 288 240 73 10 chr3 101105411 101105507 -116931651 + MLT1D LTR MaLR 4 105 -362 4435 49 21 5 chr3 101105622 101106194 -116930964 + L1PA8 LINE L1 5589 6169 -3 466 224 119 37 chr3 101106207 101106508 -116930650 + MLT1D LTR MaLR 114 467 0 26 88 0 0 chr3 101107759 101107827 -116929331 + AT_rich Low_complexity Low_complexity 1 68 0 818 226 193 4 chr3 101108393 101108667 -116928491 - MER34 LTR ERV1 0 542 217 22 0 0 0 chr3 101108844 101108866 -116928292 + AT_rich Low_complexity Low_complexity 1 22 0 2021 152 43 0 chr3 101109397 101109725 -116927433 - MER47A DNA MER2_type 0 366 25 2198 259 35 45 chr3 101110186 101110805 -116926353 + MER21B LTR ERV1 22 634 -229 814 296 27 5 chr3 101110797 101111020 -116926138 + LTR40b LTR ERVL 214 441 -21 * 27 49 0 0 chr3 101111533 101111574 -116925584 + AT_rich Low_complexity Low_complexity 1 41 0 25 51 0 0 chr3 101111737 101111776 -116925382 + AT_rich Low_complexity Low_complexity 1 39 0 1615 84 4 4 chr3 101112026 101112253 -116924905 + L1PA11 LINE L1 5940 6166 -8 307 260 52 10 chr3 101112498 101112594 -116924564 + MIR SINE MIR 113 212 -50 21 36 0 0 chr3 101112636 101112664 -116924494 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr3 101113068 101113103 -116924055 + AT_rich Low_complexity Low_complexity 1 35 0 297 311 22 11 chr3 101113392 101113482 -116923676 + MIR SINE MIR 17 107 -155 42976 30 22 1 chr3 101113521 101119546 -116917612 - L1PA2 LINE L1 0 6155 5 4577 95 0 5 chr3 101119554 101120195 -116916963 + L1PA10 LINE L1 5519 6156 -12 2016 254 60 38 chr3 101120229 101120913 -116916245 - L1M2 LINE L1 -4974 2235 1537 2211 242 19 33 chr3 101120986 101121547 -116915611 - L1M2 LINE L1 -6567 642 88 536 42 14 0 chr3 101121547 101121618 -116915540 + (TTCTC)n Simple_repeat Simple_repeat 4 75 0 304 221 13 0 chr3 101122168 101122258 -116914900 - L1M2 LINE L1 -6746 463 2 512 110 0 0 chr3 101123878 101123960 -116913198 + L1MA2 LINE L1 6223 6304 0 291 227 82 21 chr3 101124181 101124278 -116912880 + MIR SINE MIR 2 104 -158 381 291 203 45 chr3 101124367 101124751 -116912407 + L1MC4a LINE L1 5978 6300 -1508 231 88 0 0 chr3 101124751 101124785 -116912373 + (TG)n Simple_repeat Simple_repeat 1 34 0 381 291 203 45 chr3 101124785 101124977 -116912181 + L1MC4a LINE L1 6300 6645 -1163 21 57 0 0 chr3 101125236 101125271 -116911887 + AT_rich Low_complexity Low_complexity 1 35 0 261 0 0 0 chr3 101125371 101125400 -116911758 + (TG)n Simple_repeat Simple_repeat 2 30 0 3528 107 0 0 chr3 101125459 101125934 -116911224 + L1P LINE L1 2 476 -5670 7181 38 7 5 chr3 101125934 101126884 -116910274 + L1PA4 LINE L1 5222 6173 0 23854 71 11 1 chr3 101126884 101130036 -116907122 - L1PA4 LINE L1 -2945 3201 18 17398 41 5 0 chr3 101130036 101132988 -116904170 + L1PA4 LINE L1 3194 6151 -4 1340 194 74 31 chr3 101134509 101134859 -116902299 - MLT1A1 LTR MaLR 0 365 1 23 0 0 0 chr3 101136474 101136497 -116900661 + AT_rich Low_complexity Low_complexity 1 23 0 309 109 0 0 chr3 101137546 101137601 -116899557 + (TA)n Simple_repeat Simple_repeat 2 56 0 1853 146 14 10 chr3 101137601 101137896 -116899262 - AluSx SINE Alu -16 296 1 23 0 0 0 chr3 101140171 101140194 -116896964 + AT_rich Low_complexity Low_complexity 1 23 0 2066 179 60 81 chr3 101140844 101141365 -116895793 + MER67D LTR ERV1 1 510 -4 188 119 0 24 chr3 101142468 101142510 -116894648 + (TA)n Simple_repeat Simple_repeat 1 41 0 420 327 65 13 chr3 101143466 101143775 -116893383 + L1MEc LINE L1 1432 1756 -4640 2390 133 5 8 chr3 101144110 101144477 -116892681 - THE1C LTR MaLR -8 367 2 9129 133 48 42 chr3 101144480 101146046 -116891112 - THE1C-int LTR MaLR -5 1575 1 2218 156 3 26 chr3 101146046 101146430 -116890728 - THE1C LTR MaLR 0 375 1 275 269 116 25 chr3 101146739 101147145 -116890013 + L1M4 LINE L1 4945 5387 -759 2104 179 11 0 chr3 101147163 101147521 -116889637 + MER75 DNA T2_type 6 367 -147 26 0 0 0 chr3 101147602 101147628 -116889530 + AT_rich Low_complexity Low_complexity 1 26 0 441 228 30 0 chr3 101147655 101147756 -116889402 + MER7A DNA MER2_type 1 102 -244 8868 235 39 22 chr3 101149002 101150916 -116886242 + L1PA15 LINE L1 1534 3413 -3384 1521 176 104 21 chr3 101150916 101151252 -116885906 - THE1B LTR MaLR 0 364 1 11152 112 9 1 chr3 101151252 101152819 -116884339 - THE1B-int LTR MaLR 0 1580 1 1760 167 69 20 chr3 101152819 101153166 -116883992 - THE1B LTR MaLR 0 364 1 8868 235 39 22 chr3 101153166 101154310 -116882848 + L1PA15 LINE L1 3412 4661 -2136 7544 207 121 11 chr3 101154321 101155903 -116881255 - MER52A LTR ERV1 0 1755 1 3925 219 103 12 chr3 101155905 101157610 -116879548 + L1PA15 LINE L1 4661 6531 -285 1235 197 23 8 chr3 101157710 101157969 -116879189 + L1PA15 LINE L1 6549 6811 -5 427 282 23 23 chr3 101157974 101158105 -116879053 + MIR SINE MIR 65 195 -67 28 0 0 0 chr3 101158153 101158181 -116878977 + AT_rich Low_complexity Low_complexity 1 28 0 4407 180 32 20 chr3 101158480 101159459 -116877699 + L1 LINE L1 4190 5179 -967 25 51 0 0 chr3 101159576 101159615 -116877543 + AT_rich Low_complexity Low_complexity 1 39 0 1741 160 0 4 chr3 101160734 101161002 -116876156 - AluSx SINE Alu -15 297 31 195 378 101 40 chr3 101161067 101161363 -116875795 - L2 LINE L2 -580 2734 2421 446 266 56 36 chr3 101162093 101162345 -116874813 - MIR SINE MIR -3 259 3 2224 111 3 0 chr3 101163341 101163648 -116873510 + AluSq SINE Alu 1 308 -5 322 140 0 0 chr3 101166055 101166105 -116871053 + L1PB4 LINE L1 6041 6090 -66 293 224 0 0 chr3 101166973 101167031 -116870127 + LTR40b LTR ERVL 3 60 -459 1224 284 37 89 chr3 101167052 101167626 -116869532 + MLT1E LTR MaLR 50 593 0 654 246 86 9 chr3 101167626 101167927 -116869231 + LTR40b LTR ERVL 57 462 0 182 324 15 59 chr3 101167934 101168002 -116869156 + L2 LINE L2 3188 3252 -20 41488 60 3 4 chr3 101168116 101174276 -116862882 + L1PA4 LINE L1 2 6155 0 188 333 42 0 chr3 101174382 101174454 -116862704 - MIR SINE MIR -74 188 114 274 201 0 22 chr3 101174454 101174708 -116862450 + AluJo SINE Alu 1 300 -2 342 351 8 22 chr3 101175365 101175499 -116861659 - MIR SINE MIR -111 151 20 1878 190 16 32 chr3 101176257 101176689 -116860469 + L1MC2 LINE L1 5446 5870 -474 709 144 0 8 chr3 101176849 101176967 -116860191 - Tigger3b DNA MER2_type -72 1160 1044 29 28 0 0 chr3 101176995 101177031 -116860127 + AT_rich Low_complexity Low_complexity 1 36 0 21538 58 4 1 chr3 101177031 101180588 -116856570 - L1PA5 LINE L1 -8 6146 2578 13865 76 6 1 chr3 101180592 101182467 -116854691 + L1PA5 LINE L1 705 2589 -3557 4259 137 46 16 chr3 101182467 101183271 -116853887 - Tigger3b DNA MER2_type -272 959 132 1653 143 47 4 chr3 101183273 101183531 -116853627 - THE1B LTR MaLR -43 321 53 518 202 35 0 chr3 101183531 101183645 -116853513 - L1MEc LINE L1 -3403 2812 2695 580 236 53 18 chr3 101183657 101183882 -116853276 - L1MEc LINE L1 -4179 2217 1985 2625 263 77 20 chr3 101183896 101184995 -116852163 - L1MEc LINE L1 -994 1582 371 444 254 137 29 chr3 101185014 101185219 -116851939 - L2 LINE L2 -1829 1485 1259 2226 303 93 36 chr3 101185224 101186241 -116850917 - L2 LINE L2 -2232 1082 8 1550 210 90 8 chr3 101186341 101186707 -116850451 - MSTD LTR MaLR 0 396 1 182 308 0 0 chr3 101187330 101187382 -116849776 - MIR SINE MIR -108 154 103 332 236 0 9 chr3 101187656 101187762 -116849396 + CT-rich Low_complexity Low_complexity 1 105 0 22 0 0 0 chr3 101187831 101187853 -116849305 + AT_rich Low_complexity Low_complexity 1 22 0 23 92 0 0 chr3 101188173 101188238 -116848920 + AT_rich Low_complexity Low_complexity 1 65 0 22 0 0 0 chr3 101188503 101188525 -116848633 + AT_rich Low_complexity Low_complexity 1 22 0 320 27 0 0 chr3 101188667 101188704 -116848454 - tRNA-Thr-ACA tRNA tRNA -39 37 1 22 0 0 0 chr3 101189005 101189027 -116848131 + AT_rich Low_complexity Low_complexity 1 22 0 1805 153 7 3 chr3 101190617 101190905 -116846253 + AluJb SINE Alu 1 289 -23 1966 170 33 0 chr3 101191072 101191408 -116845750 - MER7A DNA MER2_type -1 345 1 357 190 0 0 chr3 101192576 101192634 -116844524 + MER74C LTR ERVL 403 460 0 286 310 98 81 chr3 101192642 101192816 -116844342 - LTR16B LTR ERVL -251 213 37 216 186 23 0 chr3 101193817 101193860 -116843298 + CT-rich Low_complexity Low_complexity 2 45 0 186 355 113 7 chr3 101193898 101194039 -116843119 - MIR SINE MIR -50 212 57 1716 246 99 63 chr3 101194890 101195687 -116841471 - LTR1B LTR ERV1 0 826 1 1194 103 0 0 chr3 101196079 101196234 -116840924 + AluSq SINE Alu 1 155 -158 392 182 0 15 chr3 101196253 101196319 -116840839 - LOR1a LTR ERV1 -95 402 338 893 179 0 0 chr3 101196319 101196459 -116840699 + AluSq SINE Alu 152 291 -22 207 86 0 29 chr3 101197049 101197084 -116840074 + (TG)n Simple_repeat Simple_repeat 1 34 0 1138 134 6 0 chr3 101197109 101197273 -116839885 - LOR1a LTR ERV1 0 497 333 896 168 0 7 chr3 101197273 101197416 -116839742 - LOR1-int LTR ERV1 -416 7704 7563 1119 177 23 5 chr3 101197416 101197631 -116839527 - LOR1b LTR ERV1 -170 291 73 248 167 24 0 chr3 101197625 101197667 -116839491 - LOR1a LTR ERV1 -454 43 1 * 3768 131 7 15 chr3 101197670 101198550 -116838608 - LOR1a-int LTR ERV1 -3 8117 7168 292 197 16 0 chr3 101198550 101198611 -116838547 - MER49 LTR ERV1 -852 71 10 1237 165 14 0 chr3 101198611 101198823 -116838335 - LOR1a-int LTR ERV1 -1077 7043 6829 15938 124 65 27 chr3 101199002 101199447 -116837711 - LOR1b-int LTR ERV1 -4070 4050 3623 273 57 0 0 chr3 101199447 101199482 -116837676 + (TTA)n Simple_repeat Simple_repeat 1 35 0 1542 199 0 0 chr3 101199486 101199763 -116837395 - AluJb SINE Alu -31 281 5 15938 124 65 27 chr3 101199763 101200753 -116836405 - LOR1b-int LTR ERV1 -4499 3621 2670 450 53 0 0 chr3 101200753 101200810 -116836348 + (TA)n Simple_repeat Simple_repeat 2 58 0 15938 124 65 27 chr3 101200810 101203234 -116833924 - LOR1b-int LTR ERV1 -5450 2670 1 2508 174 18 0 chr3 101203234 101203687 -116833471 - LOR1b LTR ERV1 0 461 1 182 152 0 43 chr3 101205002 101205048 -116832110 + A-rich Low_complexity Low_complexity 5 48 0 24 0 0 0 chr3 101205470 101205494 -116831664 + AT_rich Low_complexity Low_complexity 1 24 0 2160 109 0 13 chr3 101205840 101206143 -116831015 + AluY SINE Alu 1 299 -12 360 281 98 13 chr3 101207001 101207179 -116829979 - MIR SINE MIR -51 157 17 2848 198 30 19 chr3 101207939 101208566 -116828592 + LTR27 LTR ERV1 3 636 0 21 57 0 0 chr3 101209905 101209940 -116827218 + AT_rich Low_complexity Low_complexity 1 35 0 430 342 19 7 chr3 101210190 101210345 -116826813 - MIR SINE MIR -6 256 100 333 262 65 19 chr3 101211340 101211447 -116825711 + L1MC4 LINE L1 6592 6703 -1339 320 316 0 26 chr3 101211369 101211483 -116825675 - L1MC4 LINE L1 -1339 6703 6593 * 1229 234 109 13 chr3 101211515 101212045 -116825113 + L1 LINE L1 2798 3378 -2768 825 287 73 3 chr3 101212106 101212489 -116824669 + L1 LINE L1 3497 3906 -2240 2198 162 22 50 chr3 101212721 101213179 -116823979 + MER65A LTR ERV1 1 445 0 407 243 45 40 chr3 101213232 101213409 -116823749 + MER65A-int LTR ERV1 55 232 -4639 260 310 6 63 chr3 101213410 101213568 -116823590 - LTR28 LTR ERV1 0 1755 1607 793 235 59 116 chr3 101213574 101214312 -116822846 - LTR28 LTR ERV1 -141 971 1 4650 201 77 66 chr3 101214443 101215579 -116821579 + MER65A-int LTR ERV1 392 1551 -3320 1633 209 7 0 chr3 101215579 101215885 -116821273 - AluJb SINE Alu 0 312 5 4650 201 77 66 chr3 101215885 101216316 -116820842 + MER65A-int LTR ERV1 1551 1976 -2895 1054 0 0 0 chr3 101216316 101216431 -116820727 + AluYb8 SINE Alu 1 115 -203 311 363 48 33 chr3 101216555 101216886 -116820272 + L1MEd LINE L1 813 1148 -4971 792 334 65 14 chr3 101217080 101217448 -116819710 - MLT2E LTR ERVL -3 625 239 645 224 70 0 chr3 101217886 101218042 -116819116 - MER3 DNA MER1_type -41 168 2 736 219 22 39 chr3 101218363 101218541 -116818617 - FAM SINE Alu 0 175 1 22 0 0 0 chr3 101218672 101218694 -116818464 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr3 101219048 101219080 -116818078 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr3 101219231 101219256 -116817902 + AT_rich Low_complexity Low_complexity 1 25 0 1889 230 47 4 chr3 101219616 101220124 -116817034 - MER65-int LTR ERV1 -2378 2493 1964 1490 148 13 13 chr3 101220127 101220444 -116816714 - AluYb8 SINE Alu -1 317 1 289 354 155 6 chr3 101220600 101220781 -116816377 - MIR SINE MIR -5 257 50 568 51 25 0 chr3 101221065 101221144 -116816014 + L1PA4 LINE L1 6074 6154 -1 223 289 78 22 chr3 101221399 101221489 -116815669 - MIR3 SINE MIR -4 204 110 1998 145 40 14 chr3 101221502 101221854 -116815304 + THE1C LTR MaLR 15 375 0 21 0 0 0 chr3 101222134 101222155 -116815003 + AT_rich Low_complexity Low_complexity 1 21 0 2165 117 7 0 chr3 101222373 101222673 -116814485 - AluSc SINE Alu -5 304 3 291 114 0 0 chr3 101222836 101222880 -116814278 + (CA)n Simple_repeat Simple_repeat 1 44 0 297 218 0 0 chr3 101223950 101224005 -116813153 - MIR SINE MIR -10 252 198 2486 47 3 25 chr3 101224006 101224324 -116812834 - AluY SINE Alu 0 311 1 2273 232 142 11 chr3 101225542 101226657 -116810501 + L1ME1 LINE L1 4903 6161 -5 221 246 16 16 chr3 101227705 101227766 -116809392 + CT-rich Low_complexity Low_complexity 1 61 0 29 28 0 0 chr3 101228292 101228328 -116808830 + AT_rich Low_complexity Low_complexity 1 36 0 31 26 0 0 chr3 101228571 101228609 -116808549 + AT_rich Low_complexity Low_complexity 1 38 0 314 343 155 6 chr3 101228977 101229158 -116808000 + MIR SINE MIR 50 257 -5 817 264 129 52 chr3 101229168 101229711 -116807447 - L2 LINE L2 -9 3304 2706 2405 153 31 24 chr3 101230838 101231262 -116805896 - Tigger2a DNA MER2_type 0 434 8 2304 101 0 3 chr3 101231599 101231906 -116805252 - AluSx SINE Alu -6 306 1 652 183 21 21 chr3 101233165 101233307 -116803851 + FLAM_C SINE Alu 1 142 -1 315 368 63 17 chr3 101233520 101233759 -116803399 - LTR33 LTR ERVL -37 484 235 3717 198 60 138 chr3 101233772 101234065 -116803093 - L1M4 LINE L1 -5045 1497 1183 579 71 12 0 chr3 101234065 101234149 -116803009 - L1PA7 LINE L1 -4 6150 6066 3717 198 60 138 chr3 101234149 101234819 -116802339 - L1M4 LINE L1 -5359 1183 705 207 0 0 0 chr3 101234819 101234842 -116802316 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 3717 198 60 138 chr3 101234842 101235484 -116801674 - L1M4 LINE L1 -5837 705 15 21 36 0 0 chr3 101235560 101235588 -116801570 + AT_rich Low_complexity Low_complexity 1 28 0 557 268 154 88 chr3 101235591 101235975 -116801183 + LTR33 LTR ERVL 1 409 -112 767 178 130 12 chr3 101235986 101236155 -116801003 - MER34 LTR ERV1 -1 541 353 292 224 53 0 chr3 101236155 101236231 -116800927 + L1MC4 LINE L1 6624 6703 -1339 1032 208 120 39 chr3 101236234 101236542 -116800616 - MER34 LTR ERV1 -183 359 27 1855 205 106 19 chr3 101236803 101237266 -116799892 - MLT1D LTR MaLR -2 503 1 267 301 63 59 chr3 101237268 101237406 -116799752 - L1 LINE L1 -1187 4959 4818 694 207 54 68 chr3 101237406 101237628 -116799530 + MER20 DNA MER1_type 1 219 0 267 301 63 59 chr3 101237628 101237728 -116799430 - L1 LINE L1 -1328 4818 4720 402 310 57 51 chr3 101238544 101238876 -116798282 - L1 LINE L1 -1736 4410 4077 361 322 36 20 chr3 101239388 101239596 -116797562 - LTR16A1 LTR ERVL -187 263 55 566 297 39 27 chr3 101239921 101240177 -116796981 + HERV16 LTR ERVL 95 353 -4643 1892 151 3 25 chr3 101240287 101240605 -116796553 + AluSq SINE Alu 1 311 -2 1541 238 98 45 chr3 101240721 101241259 -116795899 + MLT1F1 LTR MaLR 1 567 0 672 326 50 12 chr3 101241547 101241884 -116795274 + LTR33 LTR ERVL 164 513 -8 1154 263 55 55 chr3 101242104 101242503 -116794655 - LTR16C LTR ERVL 0 491 93 182 333 20 10 chr3 101242596 101242695 -116794463 + L2 LINE L2 2462 2561 -753 1472 259 83 57 chr3 101242699 101243274 -116793884 - MLT1E LTR MaLR 0 593 4 375 366 84 39 chr3 101243287 101243669 -116793489 + L2 LINE L2 2579 2977 -337 214 237 237 21 chr3 101243831 101243928 -116793230 + L2 LINE L2 3155 3272 0 188 302 0 0 chr3 101245301 101245354 -116791804 - MIR SINE MIR -10 252 200 1891 171 47 117 chr3 101245432 101246004 -116791154 - L1MD2 LINE L1 -21 6338 5807 1996 277 52 12 chr3 101246017 101246866 -116790292 - L1 LINE L1 -2751 3395 2513 2170 109 3 0 chr3 101246900 101247202 -116789956 - AluSp SINE Alu -10 303 1 2487 123 11 8 chr3 101247869 101248243 -116788915 - THE1C LTR MaLR 0 375 1 832 236 28 5 chr3 101248249 101248461 -116788697 + U3 snRNA snRNA 1 217 0 27 29 0 0 chr3 101248461 101248495 -116788663 + AT_rich Low_complexity Low_complexity 1 34 0 2203 238 34 23 chr3 101248899 101249459 -116787699 + MLT1F1 LTR MaLR 2 567 0 2016 128 3 10 chr3 101252905 101253217 -116783941 + AluSg SINE Alu 1 310 0 2197 156 32 3 chr3 101255014 101255392 -116781766 + MLT1B LTR MaLR 1 389 -1 21 0 0 0 chr3 101258619 101258640 -116778518 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr3 101258971 101259011 -116778147 + AT_rich Low_complexity Low_complexity 1 40 0 25 0 0 0 chr3 101259756 101259781 -116777377 + AT_rich Low_complexity Low_complexity 1 25 0 687 293 109 60 chr3 101260727 101261232 -116775926 - L2 LINE L2 -1 3312 2786 1492 311 77 28 chr3 101261241 101261689 -116775469 - L2 LINE L2 -683 2631 2140 381 102 0 0 chr3 101261689 101261748 -116775410 + (CA)n Simple_repeat Simple_repeat 2 60 0 1492 311 77 28 chr3 101261748 101261951 -116775207 - L2 LINE L2 -1174 2140 1948 22 35 0 0 chr3 101262881 101262910 -116774248 + AT_rich Low_complexity Low_complexity 1 29 0 215 295 71 9 chr3 101262964 101263076 -116774082 - MIR SINE MIR -12 250 132 30 0 0 0 chr3 101263360 101263390 -116773768 + AT_rich Low_complexity Low_complexity 1 30 0 2046 174 19 22 chr3 101263401 101263814 -116773344 - MLT2D LTR ERVL 0 414 3 310 161 0 0 chr3 101263815 101263871 -116773287 - Ricksha DNA DNA -2899 347 292 15444 230 41 17 chr3 101263872 101266936 -116770222 - ERVL-D LTR ERVL -1684 4080 832 1781 199 11 6 chr3 101266936 101267297 -116769861 - MLT1A1 LTR MaLR 0 365 3 15444 230 41 17 chr3 101267297 101268150 -116769008 - ERVL-D LTR ERVL -4932 832 1 1558 190 51 3 chr3 101268191 101268486 -116768672 - MLT2D LTR ERVL -101 313 5 276 291 71 14 chr3 101268794 101268935 -116768223 + MLT1J LTR MaLR 305 453 -58 2719 13 0 0 chr3 101269010 101269312 -116767846 - AluYa5 SINE Alu -9 302 1 203 342 60 34 chr3 101269561 101269678 -116767480 - MIR SINE MIR -140 122 3 42 65 0 0 chr3 101269793 101269870 -116767288 + AT_rich Low_complexity Low_complexity 1 77 0 541 301 28 34 chr3 101270589 101270765 -116766393 + L2 LINE L2 2677 2851 -463 348 214 291 44 chr3 101270878 101271060 -116766098 - MLT1H LTR MaLR -203 346 120 357 341 88 79 chr3 101271159 101271616 -116765542 + L2 LINE L2 2852 3312 -1 35 41 0 0 chr3 101271713 101271762 -116765396 + AT_rich Low_complexity Low_complexity 1 49 0 370 388 7 7 chr3 101271863 101272015 -116765143 - MIR3 SINE MIR -41 167 16 2357 72 23 0 chr3 101273329 101273633 -116763525 + AluSp SINE Alu 1 311 -2 21 36 0 0 chr3 101273944 101273972 -116763186 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr3 101275079 101275108 -116762050 + AT_rich Low_complexity Low_complexity 1 29 0 545 335 73 16 chr3 101275319 101275567 -116761591 - MIR SINE MIR 0 262 1 229 341 67 39 chr3 101277725 101277933 -116759225 + L2 LINE L2 2574 2787 -527 954 286 45 24 chr3 101278582 101278869 -116758289 + LTR40a LTR ERVL 1 293 -226 1625 288 37 49 chr3 101279099 101279772 -116757386 + HERVL68 LTR ERVL 935 1599 -3931 3997 286 63 27 chr3 101279778 101281430 -116755728 + HERVL68 LTR ERVL 2050 3789 -1741 1688 233 83 65 chr3 101281482 101282001 -116755157 - MER77 LTR ERV1 -22 583 56 2525 276 45 28 chr3 101282001 101282799 -116754359 + HERVL68 LTR ERVL 3815 4626 -904 290 309 23 63 chr3 101283071 101283246 -116753912 + HERVL68 LTR ERVL 2509 2676 -361 337 179 45 0 chr3 101283499 101283566 -116753592 + HERVL68 LTR ERVL 2796 2865 -172 730 239 103 0 chr3 101283591 101283775 -116753383 + HERVL68 LTR ERVL 5323 5525 -5 1403 256 87 32 chr3 101283779 101284271 -116752887 + LTR40a LTR ERVL 1 519 0 529 207 23 17 chr3 101285814 101285988 -116751170 + GA-rich Low_complexity Low_complexity 4 178 0 315 0 0 0 chr3 101287013 101287048 -116750110 + (T)n Simple_repeat Simple_repeat 1 35 0 518 304 187 9 chr3 101287158 101287372 -116749786 + MIR SINE MIR 3 254 -8 216 67 0 0 chr3 101287373 101287403 -116749755 + (CAT)n Simple_repeat Simple_repeat 1 30 0 315 49 0 0 chr3 101287991 101288032 -116749126 + (CA)n Simple_repeat Simple_repeat 2 42 0 467 338 53 4 chr3 101289824 101290052 -116747106 + HAL1b LINE L1 303 541 -807 1950 92 34 8 chr3 101290061 101290411 -116746747 + LTR7 LTR ERV1 1 448 -2 5078 117 90 16 chr3 101290411 101291531 -116745627 - HERVH LTR ERV1 -6217 1496 229 216 0 0 0 chr3 101291691 101291715 -116745443 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 40002 40 24 2 chr3 101291717 101295159 -116741999 - L1PA3 LINE L1 -6 6149 2513 180 0 0 0 chr3 101295159 101295179 -116741979 + (GTGTG)n Simple_repeat Simple_repeat 3 22 0 40002 40 24 2 chr3 101295179 101297747 -116739411 - L1PA3 LINE L1 -3642 2513 3 5767 219 36 33 chr3 101299372 101301648 -116735510 + L1PBa LINE L1 3 2272 -4591 225 0 0 0 chr3 101301648 101301673 -116735485 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5767 219 36 33 chr3 101301673 101302308 -116734850 + L1PBa LINE L1 2272 1981 -4882 2337 77 0 0 chr3 101302308 101302607 -116734551 - AluY SINE Alu -12 299 1 5767 219 36 33 chr3 101302607 101302724 -116734434 + L1PBa LINE L1 1980 2095 -4768 812 199 37 6 chr3 101302725 101302886 -116734272 - AluJb SINE Alu -146 166 1 267 288 50 0 chr3 101303512 101303592 -116733566 - LTR33A LTR ERVL -340 183 100 198 71 0 0 chr3 101304741 101304769 -116732389 + (CA)n Simple_repeat Simple_repeat 1 28 0 189 0 53 53 chr3 101305464 101305502 -116731656 + (TAAAA)n Simple_repeat Simple_repeat 5 42 0 203 275 62 62 chr3 101305631 101305711 -116731447 - L2 LINE L2 -25 3247 3168 1357 194 62 26 chr3 101305852 101305988 -116731170 - AluJo SINE Alu -29 283 153 339 25 0 0 chr3 101305988 101306028 -116731130 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 1357 194 62 26 chr3 101306028 101306164 -116730994 - AluJo SINE Alu -159 153 1 193 229 0 129 chr3 101306481 101306551 -116730607 + L2 LINE L2 2882 2942 -372 505 251 154 0 chr3 101306631 101306826 -116730332 - MLT1H LTR MaLR -311 238 14 824 208 6 12 chr3 101306943 101307111 -116730047 + AluJb SINE Alu 140 306 -6 385 293 27 48 chr3 101309229 101309376 -116727782 + MIR3 SINE MIR 58 201 -7 403 338 39 34 chr3 101309394 101309598 -116727560 + MIR3 SINE MIR 3 207 -1 40209 38 23 1 chr3 101310466 101316489 -116720669 + L1PA2 LINE L1 2 6155 0 23 33 0 0 chr3 101316582 101316612 -116720546 + AT_rich Low_complexity Low_complexity 1 30 0 323 286 89 49 chr3 101316717 101316920 -116720238 + L2 LINE L2 1256 1466 -1848 1480 317 102 53 chr3 101316942 101317686 -116719472 + L2 LINE L2 1615 2424 -890 3314 186 22 28 chr3 101317686 101318369 -116718789 + LTR58 LTR ERV1 1 679 0 1480 317 102 53 chr3 101318369 101318644 -116718514 + L2 LINE L2 2424 2684 -630 185 111 56 0 chr3 101318801 101318837 -116718321 + (TATATG)n Simple_repeat Simple_repeat 3 40 0 249 33 0 0 chr3 101319139 101319169 -116717989 + (CA)n Simple_repeat Simple_repeat 2 31 0 484 196 0 31 chr3 101319170 101319267 -116717891 - AluJo SINE Alu -97 215 122 243 281 0 0 chr3 101320422 101320479 -116716679 + GA-rich Low_complexity Low_complexity 5 61 0 2364 114 19 29 chr3 101320805 101321183 -116715975 - THE1C LTR MaLR -1 374 1 2747 19 0 3 chr3 101321314 101321621 -116715537 + AluY SINE Alu 1 306 -5 2363 110 3 6 chr3 101324585 101324931 -116712227 + L1PA16 LINE L1 5813 6157 -9 2016 132 7 0 chr3 101324953 101325242 -116711916 + AluSq SINE Alu 1 291 -22 210 37 0 0 chr3 101325242 101325269 -116711889 + (TTAA)n Simple_repeat Simple_repeat 2 28 0 232 295 16 25 chr3 101325375 101325497 -116711661 - Charlie8 DNA MER1_type -2253 164 44 220 261 204 64 chr3 101326398 101326555 -116710603 + MIR SINE MIR 71 249 -13 2029 137 38 41 chr3 101327142 101327507 -116709651 + THE1B LTR MaLR 1 364 0 331 200 0 0 chr3 101329430 101329500 -116707658 - MER116 DNA Mariner 0 80 11 23 0 0 0 chr3 101329535 101329558 -116707600 + AT_rich Low_complexity Low_complexity 1 23 0 51 0 0 0 chr3 101329607 101329658 -116707500 + AT_rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chr3 101330400 101330429 -116706729 + AT_rich Low_complexity Low_complexity 1 29 0 285 275 121 54 chr3 101332377 101332526 -116704632 - L3 LINE CR1 -5 1572 1414 207 156 0 0 chr3 101333633 101333665 -116703493 + (CA)n Simple_repeat Simple_repeat 1 32 0 183 156 0 0 chr3 101333990 101334022 -116703136 + (CACCAT)n Simple_repeat Simple_repeat 4 35 0 815 289 40 20 chr3 101334542 101335043 -116702115 - L1M4 LINE L1 -2957 4608 4098 676 172 33 20 chr3 101335059 101335210 -116701948 - LTR40b LTR ERVL 0 462 310 * 1734 117 25 7 chr3 101335202 101335483 -116701675 + MLT2A1 LTR ERVL 46 331 -113 848 123 39 0 chr3 101335486 101335640 -116701518 - L1M4 LINE L1 -4956 2609 2450 382 141 0 0 chr3 101335640 101335704 -116701454 + MLT2A1 LTR ERVL 339 402 -42 297 0 0 0 chr3 101335720 101335753 -116701405 + (CA)n Simple_repeat Simple_repeat 2 34 0 2860 173 22 62 chr3 101335819 101336449 -116700709 + L1MA3 LINE L1 1664 2268 -5297 720 144 72 30 chr3 101336448 101336678 -116700480 - L1 LINE L1 -3802 3763 3525 * 7598 170 51 52 chr3 101336679 101337266 -116699892 + L1MA3 LINE L1 2262 2848 -4717 207 0 0 0 chr3 101337266 101337289 -116699869 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7598 170 51 52 chr3 101337289 101337359 -116699799 + L1MA3 LINE L1 2848 2917 -4648 2920 3 0 0 chr3 101337359 101337673 -116699485 + AluYb8 SINE Alu 1 314 -4 7598 170 51 52 chr3 101337673 101340702 -116696456 + L1MA3 LINE L1 2917 5940 -1625 1230 175 80 7 chr3 101340702 101340976 -116696182 + MSTA LTR MaLR 1 294 -134 1964 163 23 6 chr3 101340976 101341325 -116695833 + THE1A LTR MaLR 1 355 0 11462 101 8 4 chr3 101341325 101342900 -116694258 + THE1A-int LTR MaLR 1 1580 0 1989 158 17 6 chr3 101342902 101343251 -116693907 + THE1A LTR MaLR 3 355 0 631 148 0 0 chr3 101343270 101343371 -116693787 + MSTA LTR MaLR 328 428 0 3029 178 4 0 chr3 101343371 101343894 -116693264 + MSTA-int LTR MaLR 14 538 -1113 2911 159 18 67 chr3 101343893 101344491 -116692667 + MSTA-int LTR MaLR 1006 1574 -6 * 1897 175 91 5 chr3 101344496 101344890 -116692268 + MSTA LTR MaLR 1 428 0 797 157 0 0 chr3 101344890 101345030 -116692128 + L1MA3 LINE L1 5936 6075 -1490 6040 155 11 26 chr3 101345077 101346558 -116690600 + L1MA3 LINE L1 6064 7519 -205 1798 154 0 7 chr3 101346558 101346843 -116690315 - AluSx SINE Alu -7 305 23 6040 155 11 26 chr3 101346843 101347037 -116690121 + L1MA3 LINE L1 7519 7714 -10 28 0 0 0 chr3 101347037 101347065 -116690093 + AT_rich Low_complexity Low_complexity 1 28 0 722 307 53 12 chr3 101347201 101347729 -116689429 - L1M4c LINE L1 -4810 1753 1041 41178 66 3 1 chr3 101348603 101354689 -116682469 + L1PA4 LINE L1 1 6098 -57 1210 234 63 55 chr3 101354866 101355323 -116681835 - L1ME3 LINE L1 -70 6092 5632 228 207 24 12 chr3 101357052 101357134 -116680024 + GA-rich Low_complexity Low_complexity 2 84 0 408 143 0 0 chr3 101357166 101357236 -116679922 + (GGAA)n Simple_repeat Simple_repeat 1 70 0 43 0 0 0 chr3 101357970 101358013 -116679145 + AT_rich Low_complexity Low_complexity 1 43 0 268 268 75 48 chr3 101358300 101358528 -116678630 + HAL1 LINE L1 1284 1517 -990 507 276 124 43 chr3 101358896 101360067 -116677091 + L1ME LINE L1 4258 5530 -632 184 219 0 0 chr3 101360649 101360690 -116676468 - L2 LINE L2 0 3313 3273 532 283 87 25 chr3 101361819 101362259 -116674899 - LTR33 LTR ERVL -8 513 1 195 184 0 0 chr3 101362812 101362850 -116674308 + (TG)n Simple_repeat Simple_repeat 2 39 0 2758 65 93 19 chr3 101363024 101363441 -116673717 + LTR7 LTR ERV1 1 448 -2 7065 111 1 7 chr3 101363460 101364507 -116672651 + HERVH LTR ERV1 1947 2987 -4726 841 150 27 0 chr3 101364501 101364648 -116672510 + HERVH LTR ERV1 3140 3290 -4423 * 3340 125 0 6 chr3 101364638 101365143 -116672015 + HERVH LTR ERV1 3492 3993 -3720 4169 149 1 9 chr3 101365145 101365809 -116671349 + HERVH LTR ERV1 4488 5146 -2567 2219 123 43 45 chr3 101365792 101366406 -116670752 + HERVH LTR ERV1 5588 7713 0 * 1995 92 11 21 chr3 101366406 101366769 -116670389 + LTR7 LTR ERV1 1 448 -2 209 192 39 0 chr3 101366857 101366909 -116670249 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 180 0 0 0 chr3 101366974 101366994 -116670164 + (CA)n Simple_repeat Simple_repeat 1 20 0 604 198 45 0 chr3 101367184 101367341 -116669817 - Charlie5 DNA MER1_type 0 2624 2461 209 303 0 30 chr3 101367458 101367524 -116669634 + MIR3 SINE MIR 95 158 -50 25 0 0 0 chr3 101367526 101367551 -116669607 + AT_rich Low_complexity Low_complexity 1 25 0 2125 134 3 0 chr3 101368026 101368332 -116668826 - AluSx SINE Alu -5 307 1 2181 104 3 0 chr3 101368449 101368747 -116668411 - AluSg SINE Alu -11 299 1 186 143 0 0 chr3 101369586 101369621 -116667537 + (CA)n Simple_repeat Simple_repeat 2 36 0 187 314 57 32 chr3 101370856 101370980 -116666178 + L2 LINE L2 3171 3297 -16 184 365 24 35 chr3 101371655 101371740 -116665418 + L2 LINE L2 3189 3272 0 26 0 0 0 chr3 101371911 101371937 -116665221 + AT_rich Low_complexity Low_complexity 1 26 0 478 274 37 0 chr3 101372272 101372407 -116664751 + MLT1A1 LTR MaLR 180 319 -46 239 328 67 37 chr3 101372651 101372785 -116664373 - L2 LINE L2 -1 3271 3134 6825 61 34 0 chr3 101376902 101378287 -116658871 - L1PA6 LINE L1 -1 6153 4742 5709 57 8 0 chr3 101378287 101379019 -116658139 + L1PA6 LINE L1 4026 4763 -1383 541 351 18 6 chr3 101379021 101379192 -116657966 - MIR3 SINE MIR -21 187 15 226 149 11 81 chr3 101380892 101380979 -116656179 + T-rich Low_complexity Low_complexity 2 82 0 1837 198 45 21 chr3 101381388 101381824 -116655334 - L1MA7 LINE L1 -10 6281 5833 988 98 23 29 chr3 101381976 101382150 -116655008 - L1MA4 LINE L1 -4 6296 6124 288 0 0 0 chr3 101382428 101382460 -116654698 + (TG)n Simple_repeat Simple_repeat 1 32 0 2063 237 74 70 chr3 101382465 101383292 -116653866 + L1MC4 LINE L1 6485 7314 -728 747 140 72 121 chr3 101383293 101383500 -116653658 - MLT2C2 LTR ERVL -267 197 1 483 18 0 0 chr3 101383621 101383677 -116653481 + (TA)n Simple_repeat Simple_repeat 2 57 0 40435 72 3 3 chr3 101385027 101391177 -116645981 - L1PA5 LINE L1 -1 6153 4 248 313 131 0 chr3 101391198 101391297 -116645861 - MIR SINE MIR -122 140 29 556 254 152 9 chr3 101391345 101391569 -116645589 - MIR SINE MIR -6 256 1 2149 210 83 0 chr3 101391780 101392227 -116644931 + MLT2B1 LTR ERVL 1 484 -36 214 48 0 48 chr3 101392264 101392306 -116644852 + (TA)n Simple_repeat Simple_repeat 2 41 0 347 148 0 0 chr3 101392312 101392366 -116644792 + MLT2B1 LTR ERVL 467 520 0 214 303 92 34 chr3 101392367 101392486 -116644672 - MIR SINE MIR -43 219 94 6693 80 11 13 chr3 101592782 101594010 -116443148 + L1PA7 LINE L1 4448 5673 -481 2014 125 0 48 chr3 101594010 101594322 -116442836 + AluSp SINE Alu 1 297 -16 6693 80 11 13 chr3 101594322 101594801 -116442357 + L1PA7 LINE L1 5673 6151 -3 357 335 43 39 chr3 101595342 101595575 -116441583 + L3 LINE CR1 1322 1555 -22 9921 113 9 4 chr3 101597028 101598422 -116438736 - THE1B-int LTR MaLR -178 1402 1 2074 138 53 28 chr3 101598422 101598777 -116438381 - THE1B LTR MaLR 0 364 1 364 281 9 9 chr3 101599332 101599446 -116437712 + L1MC4 LINE L1 6590 6703 -1339 334 338 162 14 chr3 101599539 101599681 -116437477 - MER5A DNA MER1_type -6 183 21 25 51 0 0 chr3 101600608 101600647 -116436511 + AT_rich Low_complexity Low_complexity 1 39 0 21 57 0 0 chr3 101601000 101601035 -116436123 + AT_rich Low_complexity Low_complexity 1 35 0 272 336 19 10 chr3 101601941 101602045 -116435113 - MIR3 SINE MIR -21 187 83 21 36 0 0 chr3 101602265 101602293 -116434865 + AT_rich Low_complexity Low_complexity 1 28 0 180 97 0 0 chr3 101602538 101602569 -116434589 + (CA)n Simple_repeat Simple_repeat 2 32 0 1420 192 27 0 chr3 101604024 101604285 -116432873 + MER2 DNA MER2_type 2 269 -76 873 223 9 42 chr3 101604296 101604511 -116432647 - AluJo SINE Alu -23 289 82 660 191 0 0 chr3 101604637 101604752 -116432406 - FLAM_C SINE Alu -18 115 1 550 191 9 35 chr3 101604803 101604918 -116432240 + MER119 DNA MER1_type 450 561 -22 23 33 0 0 chr3 101605229 101605259 -116431899 + AT_rich Low_complexity Low_complexity 1 30 0 225 0 0 0 chr3 101605773 101605798 -116431360 + (CA)n Simple_repeat Simple_repeat 2 26 0 274 263 13 0 chr3 101606074 101606150 -116431008 - MER63 DNA MER1_type 0 1060 984 249 225 211 0 chr3 101606149 101606220 -116430938 + THE1B LTR MaLR 199 284 -80 * 1502 183 98 15 chr3 101606217 101606545 -116430613 + LTR45B LTR ERV1 66 420 -69 276 258 15 0 chr3 101606564 101606630 -116430528 - MER63 DNA MER1_type -94 742 676 1308 208 6 26 chr3 101606986 101607298 -116429860 - L1 LINE L1 -1964 4418 4113 858 200 0 0 chr3 101607310 101607490 -116429668 + L1 LINE L1 3276 3455 -2691 1200 224 76 69 chr3 101607506 101607899 -116429259 - MSTD LTR MaLR 0 396 1 5637 246 27 1 chr3 101607899 101609327 -116427831 - L1 LINE L1 -2289 4093 2628 1300 249 7 0 chr3 101609327 101609612 -116427546 - AluJo SINE Alu -16 296 10 804 324 79 53 chr3 101609622 101610226 -116426932 - L1 LINE L1 -3750 2632 2025 971 234 92 38 chr3 101611720 101611981 -116425177 - MLT1A2 LTR MaLR -5 369 95 1041 229 0 9 chr3 101611995 101612226 -116424932 - ERVL LTR ERVL -3989 1775 1547 2326 208 67 4 chr3 101612328 101612803 -116424355 - ERVL LTR ERVL -4192 1572 1068 742 137 23 8 chr3 101612807 101612938 -116424220 - MLT2B2 LTR ERVL -382 133 1 599 316 24 58 chr3 101612962 101613291 -116423867 + MER90 LTR ERV1 252 569 -6 1734 162 0 0 chr3 101613880 101614146 -116423012 + AluSx SINE Alu 1 266 -46 309 89 0 0 chr3 101614181 101614226 -116422932 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 334 159 16 0 chr3 101615221 101615284 -116421874 + L1PA8 LINE L1 6105 6168 -4 536 356 67 8 chr3 101615890 101616157 -116421001 - MLT1I LTR MaLR -65 344 62 2161 96 0 41 chr3 101616223 101616537 -116420621 + AluSq SINE Alu 1 301 -12 300 402 45 6 chr3 101616976 101617155 -116420003 - L1MC/D LINE L1 -2151 5657 5472 227 157 0 39 chr3 101617300 101617351 -116419807 - L1M4 LINE L1 -1519 4627 4579 252 400 43 0 chr3 101617995 101618180 -116418978 + LTR16A LTR ERVL 174 366 -84 629 347 34 34 chr3 101618393 101618834 -116418324 + L1MA6 LINE L1 1542 1982 -5504 229 316 34 51 chr3 101619137 101619254 -116417904 + L1MA6 LINE L1 1897 2011 -5554 499 271 75 32 chr3 101619376 101619657 -116417501 + L1MA6 LINE L1 3180 3472 -4093 1949 65 129 291 chr3 101619660 101620357 -116416801 + LTR12 LTR ERV1 1 584 -130 9103 121 25 10 chr3 101620367 101622516 -116414642 + HERV9 LTR ERV1 40 2299 -6100 1648 84 0 0 chr3 101622500 101622713 -116414445 + LTR12 LTR ERV1 502 714 0 * 1921 204 36 23 chr3 101622718 101623259 -116413899 + L1MEc LINE L1 2169 2672 -3543 2839 133 40 97 chr3 101623261 101623887 -116413271 + LTR14B LTR ERVK 19 608 0 3085 220 42 6 chr3 101623917 101624768 -116412390 + L1MEc LINE L1 2700 3584 -2631 1563 159 12 0 chr3 101624768 101625019 -116412139 + AluSq SINE Alu 1 254 -59 3085 220 42 6 chr3 101625019 101625030 -116412128 + L1MEc LINE L1 3584 3593 -2622 5067 195 42 48 chr3 101625031 101627235 -116409923 + L1MA6 LINE L1 5250 7525 -194 12306 189 22 20 chr3 101627352 101631171 -116405987 + L1MA3 LINE L1 2483 6305 0 269 298 35 0 chr3 101631184 101631325 -116405833 + (TA)n Simple_repeat Simple_repeat 1 146 0 33 0 0 0 chr3 101631328 101631361 -116405797 + AT_rich Low_complexity Low_complexity 1 33 0 425 206 56 63 chr3 101631681 101631807 -116405351 + LTR25 LTR ERV1 232 356 -438 232 196 0 39 chr3 101631886 101631937 -116405221 + MER61E LTR ERV1 117 165 -404 1024 184 46 9 chr3 101631988 101632205 -116404953 + MER61E LTR ERV1 341 565 -4 344 258 0 34 chr3 101632211 101632322 -116404836 - MIR SINE MIR -61 147 57 511 261 108 49 chr3 101632333 101632536 -116404622 - MER58C DNA MER1_type 0 215 1 868 348 109 42 chr3 101633400 101634205 -116402953 + L2 LINE L2 2119 2977 -337 30 45 0 0 chr3 101634668 101634712 -116402446 + AT_rich Low_complexity Low_complexity 1 44 0 609 114 29 9 chr3 101634758 101634863 -116402295 + MER2 DNA MER2_type 104 210 -135 340 289 132 0 chr3 101635767 101635888 -116401270 - MER5C DNA MER1_type -169 155 19 23 0 0 0 chr3 101635970 101635993 -116401165 + AT_rich Low_complexity Low_complexity 1 23 0 1705 158 7 0 chr3 101636304 101636601 -116400557 - L1PA13 LINE L1 -1 6162 5864 321 277 50 97 chr3 101638706 101638856 -116398302 + L1ME LINE L1 5257 5413 -2629 837 271 87 42 chr3 101638856 101639303 -116397855 + MLT1C LTR MaLR 1 467 0 321 277 50 97 chr3 101639303 101639491 -116397667 + L1ME LINE L1 5413 5579 -2463 252 310 21 76 chr3 101639504 101639649 -116397509 + L1ME LINE L1 5618 5754 -416 196 140 60 0 chr3 101639769 101639819 -116397339 + (CATA)n Simple_repeat Simple_repeat 2 54 0 1570 170 73 21 chr3 101640066 101640396 -116396762 - MER7A DNA MER2_type -1 345 1 32 43 0 0 chr3 101642122 101642168 -116394990 + AT_rich Low_complexity Low_complexity 1 46 0 311 301 31 6 chr3 101642478 101642641 -116394517 + (TA)n Simple_repeat Simple_repeat 1 167 0 26 50 0 0 chr3 101642996 101643036 -116394122 + AT_rich Low_complexity Low_complexity 1 40 0 236 331 145 32 chr3 101643605 101643916 -116393242 - L3 LINE CR1 -1 1576 1231 665 296 142 44 chr3 101644071 101644494 -116392664 + L1M3c LINE L1 77 500 -5781 2233 266 65 35 chr3 101644845 101645645 -116391513 + L1M3c LINE L1 868 1707 -4644 1929 130 0 37 chr3 101645645 101645945 -116391213 + AluSx SINE Alu 1 289 -23 2233 266 65 35 chr3 101645945 101646365 -116390793 + L1M3c LINE L1 1707 2113 -4238 375 83 0 0 chr3 101646367 101646427 -116390731 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 525 0 0 0 chr3 101646428 101646490 -116390668 - L1HS LINE L1 -5 6150 6089 * 2935 24 0 0 chr3 101646484 101646824 -116390334 + L1P LINE L1 3982 4321 -1825 346 281 95 30 chr3 101646821 101647210 -116389948 + L1M1 LINE L1 2993 3425 -4142 * 640 235 0 15 chr3 101647216 101647348 -116389810 + AluJo SINE Alu 7 136 -176 865 267 41 62 chr3 101647348 101647949 -116389209 + L1M1 LINE L1 3408 3997 -3568 1281 177 4 0 chr3 101647958 101648184 -116388974 + Tigger1 DNA MER2_type 1166 1392 -1026 2236 48 0 0 chr3 101648655 101648927 -116388231 - L1PA4 LINE L1 -23 6132 5861 446 304 53 58 chr3 101649451 101649944 -116387214 + MLT1H LTR MaLR 15 544 -5 83 42 0 0 chr3 101650021 101650139 -116387019 + AT_rich Low_complexity Low_complexity 1 118 0 223 260 10 62 chr3 101650219 101650315 -116386843 - L2 LINE L2 0 3313 3223 396 71 0 0 chr3 101650591 101650647 -116386511 + (CA)n Simple_repeat Simple_repeat 1 56 0 876 267 17 21 chr3 101650657 101650897 -116386261 - MER8 DNA MER2_type 0 239 1 774 134 0 0 chr3 101650898 101651025 -116386133 + (CA)n Simple_repeat Simple_repeat 2 128 0 242 280 19 0 chr3 101651208 101651315 -116385843 + (TA)n Simple_repeat Simple_repeat 2 110 0 1516 138 28 52 chr3 101652533 101652823 -116384335 - AluSx SINE Alu -29 283 1 21 57 0 0 chr3 101653737 101653772 -116383386 + AT_rich Low_complexity Low_complexity 1 35 0 1767 230 143 46 chr3 101654370 101654997 -116382161 + MER76 LTR ERV 1 688 0 21 0 0 0 chr3 101656724 101656745 -116380413 + AT_rich Low_complexity Low_complexity 1 21 0 3793 142 35 5 chr3 101656939 101657559 -116379599 + LTR9B LTR ERV1 6 644 0 213 278 104 26 chr3 101657594 101657709 -116379449 - MIR SINE MIR -118 144 21 240 222 0 0 chr3 101659470 101659515 -116377643 + AluJ/monomer SINE Alu 2 46 -256 1453 150 44 33 chr3 101659535 101659809 -116377349 - THE1B LTR MaLR -1 363 87 1152 198 0 0 chr3 101659911 101660130 -116377028 + AluJo SINE Alu 90 308 0 189 107 0 0 chr3 101660258 101660286 -116376872 + (TA)n Simple_repeat Simple_repeat 1 28 0 3847 129 26 3 chr3 101660435 101661056 -116376102 + MER41B LTR ERV1 1 635 0 337 302 0 9 chr3 101661093 101661199 -116375959 + GA-rich Low_complexity Low_complexity 2 106 0 2175 93 7 13 chr3 101661279 101661579 -116375579 + AluSq SINE Alu 1 298 -15 396 88 0 0 chr3 101662187 101662244 -116374914 + (TG)n Simple_repeat Simple_repeat 2 58 0 272 120 20 0 chr3 101662361 101662411 -116374747 + (TG)n Simple_repeat Simple_repeat 2 52 0 23 0 0 0 chr3 101662700 101662723 -116374435 + AT_rich Low_complexity Low_complexity 1 23 0 2032 132 0 0 chr3 101663231 101663533 -116373625 + AluSx SINE Alu 1 302 0 22 35 0 0 chr3 101663798 101663827 -116373331 + AT_rich Low_complexity Low_complexity 1 29 0 29 28 0 0 chr3 101664236 101664272 -116372886 + AT_rich Low_complexity Low_complexity 1 36 0 2281 66 36 3 chr3 101664339 101664640 -116372518 + AluY SINE Alu 1 311 0 219 261 11 68 chr3 101664672 101664708 -116372450 + MER5B DNA MER1_type 22 58 -120 1342 197 157 0 chr3 101664708 101665007 -116372151 + MER7A DNA MER2_type 2 345 -1 219 261 11 68 chr3 101665007 101665058 -116372100 + MER5B DNA MER1_type 58 104 -74 207 350 43 17 chr3 101665879 101665996 -116371162 + MIR SINE MIR 1 120 -142 1586 265 104 48 chr3 101667467 101667972 -116369186 - L1ME1 LINE L1 -21 6145 5669 2421 66 3 0 chr3 101667972 101668274 -116368884 + AluY SINE Alu 1 303 -8 1586 265 104 48 chr3 101668274 101668292 -116368866 - L1ME1 LINE L1 -497 5669 5653 2011 100 7 0 chr3 101668292 101668562 -116368596 + AluSx SINE Alu 35 306 -6 1586 265 104 48 chr3 101668562 101668958 -116368200 - L1ME1 LINE L1 -513 5653 5176 33 43 0 0 chr3 101668963 101669010 -116368148 + AT_rich Low_complexity Low_complexity 1 47 0 387 231 36 72 chr3 101672653 101672848 -116364310 - Charlie2 DNA MER1_type -449 2413 2226 582 227 92 19 chr3 101672912 101673119 -116364039 - Charlie2 DNA MER1_type -790 2072 1851 674 183 0 0 chr3 101673200 101673326 -116363832 - L1MB7 LINE L1 -9 6175 6050 487 270 33 7 chr3 101673459 101673611 -116363547 - Charlie2 DNA MER1_type -2683 179 24 10681 102 7 7 chr3 101673845 101675457 -116361701 - L1P LINE L1 -1733 4413 2802 28 0 0 0 chr3 101675467 101675495 -116361663 + AT_rich Low_complexity Low_complexity 1 28 0 2189 92 17 0 chr3 101675716 101676010 -116361148 - AluSp SINE Alu -14 299 1 26 101 0 0 chr3 101677237 101677326 -116359832 + AT_rich Low_complexity Low_complexity 1 89 0 37 39 0 0 chr3 101677387 101677438 -116359720 + AT_rich Low_complexity Low_complexity 1 51 0 21 57 0 0 chr3 101677638 101677673 -116359485 + AT_rich Low_complexity Low_complexity 1 35 0 231 36 0 0 chr3 101678812 101678840 -116358318 + (CAAAA)n Simple_repeat Simple_repeat 5 32 0 1943 114 28 14 chr3 101680438 101680728 -116356430 + AluSx SINE Alu 1 294 -18 36 62 0 0 chr3 101681471 101681535 -116355623 + AT_rich Low_complexity Low_complexity 1 64 0 384 256 178 48 chr3 101682435 101682767 -116354391 - L1ME4a LINE L1 -148 5973 5599 21 82 0 0 chr3 101682900 101682949 -116354209 + AT_rich Low_complexity Low_complexity 1 49 0 24 32 0 0 chr3 101683141 101683172 -116353986 + AT_rich Low_complexity Low_complexity 1 31 0 2745 109 94 72 chr3 101683267 101683853 -116353305 + MER4B LTR ERV1 1 779 0 435 311 9 82 chr3 101683964 101684183 -116352975 - MLT1K LTR MaLR -83 505 303 253 197 30 0 chr3 101684791 101684857 -116352301 + (TTTA)n Simple_repeat Simple_repeat 2 69 0 21 36 0 0 chr3 101685241 101685269 -116351889 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr3 101685379 101685415 -116351743 + AT_rich Low_complexity Low_complexity 1 36 0 1310 224 40 43 chr3 101685906 101686281 -116350877 - MLT1A2 LTR MaLR 0 374 1 2217 74 0 7 chr3 101686947 101687252 -116349906 - AluY SINE Alu 0 303 1 36 0 0 0 chr3 101688564 101688600 -116348558 + AT_rich Low_complexity Low_complexity 1 36 0 1959 107 7 7 chr3 101690546 101690854 -116346304 + AluSg SINE Alu 2 309 0 4153 121 54 14 chr3 101691639 101692303 -116344855 + LTR8 LTR ERV1 1 691 0 259 205 154 0 chr3 101692518 101692596 -116344562 + MER52A LTR ERV1 21 110 -1645 * 4574 196 133 112 chr3 101692586 101694070 -116343088 + MER52A LTR ERV1 235 1750 -5 2093 128 7 0 chr3 101694075 101694380 -116342778 + MER72 LTR ERV1 415 721 -1 790 199 6 12 chr3 101694381 101694547 -116342611 + MER57A LTR ERV1 239 403 0 300 290 101 17 chr3 101694547 101694700 -116342458 + MER20B DNA MER1_type 36 202 -17 8447 132 15 2 chr3 101695067 101696337 -116340821 - HSMAR1 DNA Mariner 0 1287 1 222 319 126 0 chr3 101697398 101697517 -116339641 + L2 LINE L2 3160 3293 -20 2473 65 0 0 chr3 101698170 101698476 -116338682 - AluY SINE Alu -5 306 1 517 291 116 26 chr3 101698666 101698934 -116338224 + MLT1I LTR MaLR 114 405 -4 21 36 0 0 chr3 101699184 101699212 -116337946 + AT_rich Low_complexity Low_complexity 1 28 0 204 125 0 0 chr3 101699247 101699279 -116337879 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 1031 224 216 40 chr3 101699279 101699859 -116337299 - L1M4 LINE L1 -3234 2912 2231 29 0 0 0 chr3 101700158 101700187 -116336971 + AT_rich Low_complexity Low_complexity 1 29 0 985 329 127 32 chr3 101700266 101701277 -116335881 - L1 LINE L1 -1493 4653 3547 226 167 0 19 chr3 101702806 101702860 -116334298 + A-rich Low_complexity Low_complexity 2 54 0 21 0 0 0 chr3 101703021 101703042 -116334116 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 101703135 101703157 -116334001 + AT_rich Low_complexity Low_complexity 1 22 0 6611 27 0 0 chr3 101703309 101704083 -116333075 - L1PA2 LINE L1 -3 6152 5379 229 273 0 0 chr3 101704157 101704212 -116332946 + CT-rich Low_complexity Low_complexity 2 56 0 291 314 20 29 chr3 101704845 101704947 -116332211 - MIR3 SINE MIR 0 208 108 1883 67 0 4 chr3 101705516 101705756 -116331402 + AluY SINE Alu 73 311 0 1902 47 0 8 chr3 101706998 101707255 -116329903 - L1PA7 LINE L1 -644 5510 5256 4372 73 63 2 chr3 101707269 101707886 -116329272 + L1PA7 LINE L1 5500 6154 0 180 0 0 0 chr3 101708352 101708372 -116328786 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 460 305 79 83 chr3 101709288 101709708 -116327450 + L1MC4a LINE L1 3730 4147 -1999 213 356 72 36 chr3 101709891 101710146 -116327012 + L2 LINE L2 2800 3065 -207 2205 110 0 0 chr3 101710244 101710544 -116326614 - AluY SINE Alu -11 300 1 42811 52 1 0 chr3 101710750 101716899 -116320259 + L1PA4 LINE L1 1 6155 0 29 0 0 0 chr3 101717316 101717345 -116319813 + AT_rich Low_complexity Low_complexity 1 29 0 314 28 0 0 chr3 101717537 101717573 -116319585 + (A)n Simple_repeat Simple_repeat 1 36 0 1962 134 0 10 chr3 101717633 101717932 -116319226 + AluSc SINE Alu 4 299 -10 21 36 0 0 chr3 101718021 101718049 -116319109 + AT_rich Low_complexity Low_complexity 1 28 0 2698 277 57 30 chr3 101718069 101718982 -116318176 + L1MC4a LINE L1 5256 6211 -1597 1703 47 0 0 chr3 101718982 101719195 -116317963 + L1PA4 LINE L1 5940 6152 -3 2698 277 57 30 chr3 101719195 101719467 -116317691 + L1MC4a LINE L1 6211 6474 -1334 435 317 39 24 chr3 101721381 101721589 -116315569 - HERVL LTR ERVL -737 4917 4707 285 328 196 5 chr3 101721659 101721863 -116315295 - MIR SINE MIR -18 244 2 500 287 17 23 chr3 101722447 101722621 -116314537 - MER5B DNA MER1_type -5 173 1 5131 180 31 4 chr3 101722661 101723743 -116313415 - L1MA4 LINE L1 -4 6296 5189 4228 193 58 25 chr3 101723737 101724764 -116312394 - L1MA4 LINE L1 -1279 4867 3807 * 681 193 92 21 chr3 101724760 101724978 -116312180 + L1M1 LINE L1 3399 3663 -3957 * 273 57 0 0 chr3 101724978 101725013 -116312145 + (TA)n Simple_repeat Simple_repeat 1 35 0 681 193 92 21 chr3 101725013 101725041 -116312117 + L1M1 LINE L1 3663 3688 -3932 5139 215 63 8 chr3 101725102 101726422 -116310736 + L1M1 LINE L1 3608 5000 -2565 27 0 0 0 chr3 101726943 101726970 -116310188 + AT_rich Low_complexity Low_complexity 1 27 0 21 57 0 0 chr3 101727673 101727708 -116309450 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr3 101727729 101727751 -116309407 + AT_rich Low_complexity Low_complexity 1 22 0 1140 218 99 97 chr3 101728646 101729150 -116308008 + MLT1D LTR MaLR 1 505 0 1774 194 12 45 chr3 101729752 101729913 -116307245 + MLT1B LTR MaLR 1 166 -224 1867 143 113 62 chr3 101729913 101729962 -116307196 + MSTA LTR MaLR 1 46 -382 1809 174 0 7 chr3 101729962 101730261 -116306897 + AluSx SINE Alu 1 297 -15 1867 143 113 62 chr3 101730261 101730617 -116306541 + MSTA LTR MaLR 46 427 -1 1774 194 12 45 chr3 101730617 101730858 -116306300 + MLT1B LTR MaLR 166 390 0 1838 100 77 137 chr3 101730962 101731414 -116305744 + MER4A LTR ERV1 1 425 -239 492 194 188 35 chr3 101731457 101731601 -116305557 + MER4C LTR ERV1 300 465 0 6693 40 8 11 chr3 101731679 101733201 -116303957 - L1PA4 LINE L1 -114 6041 4516 724 34 0 0 chr3 101733201 101733278 -116303880 + L1PA5 LINE L1 6065 6153 -1 28 48 0 0 chr3 101734010 101734052 -116303106 + AT_rich Low_complexity Low_complexity 1 42 0 4764 188 34 11 chr3 101734086 101734557 -116302601 - L1MA8 LINE L1 -3 6288 5830 198 0 0 0 chr3 101734557 101734579 -116302579 + (TA)n Simple_repeat Simple_repeat 1 22 0 4764 188 34 11 chr3 101734579 101735306 -116301852 - L1MA8 LINE L1 -461 5830 5062 559 332 56 63 chr3 101735324 101735899 -116301259 + L2 LINE L2 2724 3296 -17 1772 150 76 17 chr3 101735961 101736315 -116300843 + THE1C LTR MaLR 1 375 0 1807 135 24 7 chr3 101736325 101736613 -116300545 + AluSx SINE Alu 1 293 -19 22 35 0 0 chr3 101736648 101736677 -116300481 + AT_rich Low_complexity Low_complexity 1 29 0 1427 208 43 56 chr3 101736846 101737240 -116299918 - MLT1B LTR MaLR 0 390 2 393 233 147 27 chr3 101737317 101737467 -116299691 + MLT1E LTR MaLR 3 170 -423 773 284 40 16 chr3 101737562 101737812 -116299346 + MLT1E LTR MaLR 338 593 0 1753 201 22 11 chr3 101738469 101738828 -116298330 - MLT1A1 LTR MaLR -2 363 1 22 56 0 0 chr3 101738950 101738986 -116298172 + AT_rich Low_complexity Low_complexity 1 36 0 210 119 48 0 chr3 101739756 101739798 -116297360 + (TA)n Simple_repeat Simple_repeat 2 45 0 24 0 0 0 chr3 101740040 101740064 -116297094 + AT_rich Low_complexity Low_complexity 1 24 0 381 244 111 37 chr3 101740521 101740656 -116296502 + MER21B LTR ERV1 344 488 -375 3593 175 24 9 chr3 101741597 101742293 -116294865 - L1MA8 LINE L1 -1497 4649 3943 23 33 0 0 chr3 101742738 101742768 -116294390 + AT_rich Low_complexity Low_complexity 1 30 0 31 26 0 0 chr3 101742885 101742923 -116294235 + AT_rich Low_complexity Low_complexity 1 38 0 215 188 62 0 chr3 101743724 101743788 -116293370 + (TAAA)n Simple_repeat Simple_repeat 1 68 0 1329 77 0 0 chr3 101744999 101745168 -116291990 - AluSg/x SINE Alu -8 304 136 904 208 6 0 chr3 101745272 101745440 -116291718 + AluSg/x SINE Alu 118 286 -26 23 33 0 0 chr3 101745440 101745470 -116291688 + AT_rich Low_complexity Low_complexity 1 30 0 1958 180 8 13 chr3 101745477 101745854 -116291304 + THE1C LTR MaLR 1 375 0 24 0 0 0 chr3 101746524 101746548 -116290610 + AT_rich Low_complexity Low_complexity 1 24 0 1013 235 22 4 chr3 101747929 101748159 -116288999 - AluJo SINE Alu -39 273 40 216 111 0 0 chr3 101748510 101748546 -116288612 + (TG)n Simple_repeat Simple_repeat 1 36 0 4400 133 58 9 chr3 101749513 101750010 -116287148 - MER4E LTR ERV1 0 779 233 180 0 0 0 chr3 101750010 101750030 -116287128 + (CAAAA)n Simple_repeat Simple_repeat 5 24 0 4400 133 58 9 chr3 101750030 101750275 -116286883 - MER4E LTR ERV1 -546 233 1 3692 148 21 66 chr3 101750433 101751150 -116286008 + LTR8 LTR ERV1 1 685 -6 3324 177 59 0 chr3 101751272 101751878 -116285280 + LTR48B LTR ERV1 1 642 -2 24 0 0 0 chr3 101752220 101752244 -116284914 + AT_rich Low_complexity Low_complexity 1 24 0 222 37 0 0 chr3 101752336 101752363 -116284795 + (TA)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr3 101753005 101753026 -116284132 + AT_rich Low_complexity Low_complexity 1 21 0 335 204 10 107 chr3 101753509 101753612 -116283546 + MER5A DNA MER1_type 95 187 -2 35 54 0 0 chr3 101755511 101755567 -116281591 + AT_rich Low_complexity Low_complexity 1 56 0 549 115 96 0 chr3 101755594 101755698 -116281460 - L1MA9 LINE L1 -79 6233 6120 1704 189 0 0 chr3 101755728 101756035 -116281123 - AluJb SINE Alu 0 312 6 1660 190 31 62 chr3 101756109 101756525 -116280633 + MER57A LTR ERV1 1 403 0 228 181 28 28 chr3 101757388 101757460 -116279698 + (TA)n Simple_repeat Simple_repeat 2 73 0 974 246 93 44 chr3 101757557 101757923 -116279235 - L1ME1 LINE L1 -5 6161 5778 193 348 90 31 chr3 101758339 101758595 -116278563 - L2 LINE L2 -812 2502 2232 189 107 0 0 chr3 101758799 101758827 -116278331 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 801 308 80 50 chr3 101759190 101759788 -116277370 - ERVL LTR ERVL -2925 2599 1945 598 290 60 65 chr3 101759944 101760344 -116276814 - L1MC4 LINE L1 -152 7890 7493 14896 30 0 1 chr3 101760929 101762734 -116274424 - L1PA2 LINE L1 -1651 4495 2692 7809 16 0 0 chr3 101762734 101764404 -116272754 + L1PA2 LINE L1 4485 6154 -1 2757 13 0 3 chr3 101765180 101765492 -116271666 - AluYb8 SINE Alu -7 311 1 29 0 0 0 chr3 101765725 101765754 -116271404 + AT_rich Low_complexity Low_complexity 1 29 0 25 112 0 0 chr3 101765930 101766046 -116271112 + AT_rich Low_complexity Low_complexity 1 116 0 7047 225 37 21 chr3 101766070 101766683 -116270475 - L1PA15-16 LINE L1 -2592 4992 4390 2208 92 3 0 chr3 101766683 101767013 -116270145 - AluSp SINE Alu 0 331 1 7047 225 37 21 chr3 101767013 101767953 -116269205 - L1PA15-16 LINE L1 -3194 4390 3466 207 0 0 0 chr3 101767953 101767976 -116269182 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7047 225 37 21 chr3 101767976 101769190 -116267968 - L1PA15-16 LINE L1 -4118 3466 2191 290 302 19 9 chr3 101769288 101769394 -116267764 - L1PA15-16 LINE L1 -5645 1940 1834 402 281 89 70 chr3 101769663 101769933 -116267225 - L1M2 LINE L1 -5783 1066 792 568 319 6 6 chr3 101770011 101770193 -116266965 - L1PA15-16 LINE L1 -7394 187 6 993 248 136 39 chr3 101770897 101771309 -116265849 + LTR68 LTR ERV1 289 740 0 507 107 0 0 chr3 101771704 101771779 -116265379 + (GGAA)n Simple_repeat Simple_repeat 3 77 0 638 280 120 32 chr3 101771796 101772171 -116264987 + MER90 LTR ERV1 2 409 -166 232 276 30 81 chr3 101772241 101772418 -116264740 + L1ME3 LINE L1 5958 6131 -39 396 273 35 21 chr3 101772425 101772568 -116264590 + MER90 LTR ERV1 419 563 -12 847 360 25 19 chr3 101772579 101772946 -116264212 - L2 LINE L2 -344 2970 2602 23 33 0 0 chr3 101773141 101773171 -116263987 + AT_rich Low_complexity Low_complexity 1 30 0 372 311 77 52 chr3 101774575 101774823 -116262335 + LTR16A LTR ERVL 197 450 0 204 219 0 0 chr3 101774840 101774881 -116262277 + (CA)n Simple_repeat Simple_repeat 2 42 0 1231 144 5 0 chr3 101774968 101775155 -116262003 - THE1B LTR MaLR 0 364 177 2324 70 30 0 chr3 101775872 101776174 -116260984 + AluY SINE Alu 1 311 0 34 0 0 0 chr3 101776253 101776287 -116260871 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr3 101776409 101776434 -116260724 + AT_rich Low_complexity Low_complexity 1 25 0 1308 290 16 20 chr3 101776654 101777151 -116260007 - L1MC/D LINE L1 -2058 5750 5256 21 36 0 0 chr3 101777171 101777199 -116259959 + AT_rich Low_complexity Low_complexity 1 28 0 1962 134 0 10 chr3 101777288 101777587 -116259571 - AluSc SINE Alu -10 299 4 297 0 0 0 chr3 101777647 101777680 -116259478 + (T)n Simple_repeat Simple_repeat 1 33 0 261 0 0 0 chr3 101778242 101778271 -116258887 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2137 96 0 3 chr3 101778273 101778564 -116258594 - AluSg SINE Alu -20 290 1 210 209 30 0 chr3 101778598 101778665 -116258493 + (TA)n Simple_repeat Simple_repeat 2 70 0 438 20 0 0 chr3 101778690 101778741 -116258417 + (CA)n Simple_repeat Simple_repeat 2 52 0 699 217 0 0 chr3 101779455 101779584 -116257574 - FLAM_A SINE Alu 0 133 5 303 103 0 0 chr3 101779758 101779797 -116257361 - Alu SINE Alu -264 44 6 2114 246 33 78 chr3 101779806 101779926 -116257232 - L1MC/D LINE L1 -1656 4490 4366 2305 81 0 0 chr3 101779926 101780223 -116256935 - AluY SINE Alu -14 297 1 2114 246 33 78 chr3 101780223 101781198 -116255960 - L1MC/D LINE L1 -1780 4366 3445 833 170 150 4 chr3 101781228 101781409 -116255749 + MSTA LTR MaLR 1 194 -232 466 102 0 42 chr3 101781410 101781528 -116255630 - SVA Other Other -610 776 664 30 59 0 0 chr3 101784008 101784059 -116253099 + AT_rich Low_complexity Low_complexity 1 51 0 2220 102 0 37 chr3 101784545 101784868 -116252290 - AluY SINE Alu 0 311 1 252 0 0 0 chr3 101784956 101784984 -116252174 + (CAAAAA)n Simple_repeat Simple_repeat 4 31 0 24 0 0 0 chr3 101785879 101785903 -116251255 + AT_rich Low_complexity Low_complexity 1 24 0 216 179 0 0 chr3 101786319 101786358 -116250800 + CT-rich Low_complexity Low_complexity 2 40 0 423 38 0 0 chr3 101786360 101786413 -116250745 + (CA)n Simple_repeat Simple_repeat 1 53 0 208 224 35 0 chr3 101787024 101787082 -116250076 + (TA)n Simple_repeat Simple_repeat 1 60 0 23 0 0 0 chr3 101787390 101787413 -116249745 + AT_rich Low_complexity Low_complexity 1 23 0 543 292 61 40 chr3 101787464 101787810 -116249348 - L1MC/D LINE L1 -2000 5808 5456 25 31 0 0 chr3 101788885 101788917 -116248241 + AT_rich Low_complexity Low_complexity 1 32 0 3430 160 38 45 chr3 101789568 101789686 -116247472 - L1PA16 LINE L1 -9 6157 6040 2335 125 8 19 chr3 101789686 101790054 -116247104 + THE1B LTR MaLR 1 364 0 3430 160 38 45 chr3 101790054 101790642 -116246516 - L1PA16 LINE L1 -126 6040 5456 4819 171 29 40 chr3 101790643 101790960 -116246198 - L1MA8 LINE L1 -231 6060 5741 195 42 0 0 chr3 101790960 101790984 -116246174 + (TA)n Simple_repeat Simple_repeat 2 25 0 4819 171 29 40 chr3 101790984 101791386 -116245772 - L1MA8 LINE L1 -550 5741 5336 2052 67 0 8 chr3 101791386 101791641 -116245517 + AluY SINE Alu 39 291 -20 594 63 0 0 chr3 101791641 101791720 -116245438 + (TA)n Simple_repeat Simple_repeat 2 80 0 4819 171 29 40 chr3 101791720 101792805 -116244353 - L1MA8 LINE L1 -953 5338 4273 24 103 0 0 chr3 101794322 101794409 -116242749 + AT_rich Low_complexity Low_complexity 1 87 0 2672 218 133 37 chr3 101794680 101795652 -116241506 + L1MD2 LINE L1 5151 6207 -152 1286 250 46 43 chr3 101795847 101796239 -116240919 - MLT2D LTR ERVL -19 395 3 42 95 0 0 chr3 101798091 101798217 -116238941 + AT_rich Low_complexity Low_complexity 1 126 0 25 31 0 0 chr3 101798378 101798410 -116238748 + AT_rich Low_complexity Low_complexity 1 32 0 1858 258 20 55 chr3 101798785 101799370 -116237788 + L1M3e LINE L1 483 1047 -6442 4039 246 56 38 chr3 101799466 101801056 -116236102 + L1M3e LINE L1 2008 3626 -3939 979 277 15 4 chr3 101801159 101801430 -116235728 + L1M3e LINE L1 3835 4108 -3457 7367 47 0 2 chr3 101802618 101803929 -116233229 - L1PA5 LINE L1 0 6154 4845 8855 45 6 0 chr3 101803932 101805030 -116232128 + L1PA5 LINE L1 3749 4852 -1294 3121 175 7 7 chr3 101805034 101805605 -116231553 - L1PA16 LINE L1 -3 6163 5593 5715 192 161 39 chr3 101805606 101807082 -116230076 - MER52A LTR ERV1 -75 1680 25 413 151 14 0 chr3 101807083 101807156 -116230002 - L1 LINE L1 -2103 4043 3970 1294 226 0 7 chr3 101807156 101807431 -116229727 + L1P LINE L1 3611 3883 -2263 290 264 66 71 chr3 101807582 101807779 -116229379 - L1ME3 LINE L1 -8 6154 5959 351 0 0 0 chr3 101809074 101809113 -116228045 + (CA)n Simple_repeat Simple_repeat 2 40 0 2388 180 124 0 chr3 101809408 101809853 -116227305 + MLT2B2 LTR ERVL 8 507 -8 22 0 0 0 chr3 101809865 101809887 -116227271 + AT_rich Low_complexity Low_complexity 1 22 0 3042 148 4 4 chr3 101810133 101810625 -116226533 + L1PA16 LINE L1 5666 6157 -9 198 167 0 0 chr3 101812409 101812445 -116224713 + A-rich Low_complexity Low_complexity 1 36 0 1781 214 164 48 chr3 101813183 101813888 -116223270 - LTR48 LTR ERV1 0 787 1 3026 110 51 2 chr3 101814158 101814631 -116222527 - L1PA4 LINE L1 -3 6152 5657 466 35 0 0 chr3 101814631 101814688 -116222470 + L1P2 LINE L1 5721 5777 -378 204 278 113 26 chr3 101814883 101815034 -116222124 - L2 LINE L2 -49 3264 3101 32 43 0 0 chr3 101816011 101816057 -116221101 + AT_rich Low_complexity Low_complexity 1 46 0 23 33 0 0 chr3 101816861 101816891 -116220267 + AT_rich Low_complexity Low_complexity 1 30 0 36 40 0 0 chr3 101817875 101817925 -116219233 + AT_rich Low_complexity Low_complexity 1 50 0 2112 70 42 3 chr3 101818576 101818863 -116218295 - AluY SINE Alu -13 298 1 901 167 31 70 chr3 101819243 101819470 -116217688 - MER20 DNA MER1_type 0 219 2 1134 210 0 39 chr3 101820291 101820548 -116216610 + AluJo SINE Alu 54 300 -12 247 73 29 73 chr3 101821124 101821192 -116215966 + (TTAAA)n Simple_repeat Simple_repeat 1 65 0 576 342 26 0 chr3 101821515 101821749 -116215409 + LTR16C LTR ERVL 200 439 -52 22 0 0 0 chr3 101822216 101822238 -116214920 + AT_rich Low_complexity Low_complexity 1 22 0 318 51 17 34 chr3 101823703 101823762 -116213396 + (TTTTA)n Simple_repeat Simple_repeat 1 58 0 195 42 0 0 chr3 101824564 101824588 -116212570 + (GA)n Simple_repeat Simple_repeat 2 25 0 320 243 167 21 chr3 101824716 101824955 -116212203 - L1MC4 LINE L1 0 8042 7769 491 92 66 0 chr3 101825026 101825102 -116212056 - L1PA10 LINE L1 0 6168 6088 350 267 66 49 chr3 101825109 101825218 -116211940 - L1MD3 LINE L1 -311 7684 7578 363 106 0 0 chr3 101825218 101825284 -116211874 + (CA)n Simple_repeat Simple_repeat 2 67 0 350 267 66 49 chr3 101825284 101825485 -116211673 - L1MD3 LINE L1 -417 7578 7273 52 30 0 0 chr3 101826914 101826980 -116210178 + AT_rich Low_complexity Low_complexity 1 66 0 23 33 0 0 chr3 101827214 101827244 -116209914 + AT_rich Low_complexity Low_complexity 1 30 0 218 81 27 0 chr3 101828204 101828241 -116208917 + (CA)n Simple_repeat Simple_repeat 1 38 0 2830 195 20 10 chr3 101828298 101828794 -116208364 - L1MC1 LINE L1 -1 6332 5828 2546 154 107 48 chr3 101828794 101829372 -116207786 + LTR9 LTR ERV1 1 612 0 2830 195 20 10 chr3 101829372 101829464 -116207694 - L1MC1 LINE L1 -505 5828 5738 1619 181 21 27 chr3 101829569 101829907 -116207251 - L1MA4A LINE L1 -135 6168 5833 * 3135 167 8 42 chr3 101829905 101830732 -116206426 + L1M1 LINE L1 4667 5477 -743 603 123 9 35 chr3 101830732 101830846 -116206312 + MER75B DNA T2_type 81 191 -52 875 117 0 0 chr3 101830857 101830977 -116206181 + AluY SINE Alu 1 120 -191 315 0 0 0 chr3 101831055 101831090 -116206068 + (ATTG)n Simple_repeat Simple_repeat 2 36 0 773 145 21 7 chr3 101831090 101831235 -116205923 - FRAM SINE Alu -19 147 1 1469 247 39 50 chr3 101831294 101831751 -116205407 + MER74A LTR ERVL 106 557 -1 775 189 16 105 chr3 101833090 101833338 -116203820 - LTR12 LTR ERV1 -251 463 238 200 347 11 11 chr3 101833561 101833656 -116203502 + MIR SINE MIR 116 210 -52 1658 190 19 3 chr3 101833724 101834035 -116203123 - MSTA LTR MaLR -112 316 1 8178 183 57 7 chr3 101834035 101835527 -116201631 - MSTA-int LTR MaLR 0 1651 75 1645 154 54 40 chr3 101835527 101835897 -116201261 + THE1C LTR MaLR 1 375 0 8178 183 57 7 chr3 101835897 101835976 -116201182 - MSTA-int LTR MaLR -1576 75 1 1441 177 18 32 chr3 101835976 101836253 -116200905 - MSTA LTR MaLR 0 428 156 502 359 57 19 chr3 101836377 101836695 -116200463 + ERVL LTR ERVL 2186 2515 -3249 449 128 23 13 chr3 101836732 101836837 -116200321 + L1M3 LINE L1 5414 5521 -770 949 204 6 2 chr3 101836851 101837050 -116200108 + L1M3 LINE L1 5478 5673 -495 6014 151 28 20 chr3 101837567 101838690 -116198468 - L1MA2 LINE L1 0 6304 5172 1769 168 30 3 chr3 101838690 101838987 -116198171 - AluSx SINE Alu -7 305 1 6014 151 28 20 chr3 101838987 101839325 -116197833 - L1MA2 LINE L1 -1132 5172 4838 1911 134 3 7 chr3 101840232 101840531 -116196627 - AluSq SINE Alu -15 298 1 225 315 90 0 chr3 101841497 101841586 -116195572 + L2 LINE L2 3216 3312 -1 272 256 11 44 chr3 101841723 101841813 -116195345 - MER69 DNA AcHobo 0 2526 2440 2039 168 15 20 chr3 101843039 101843065 -116194093 + L1P4 LINE L1 4953 4978 -1183 2930 134 12 12 chr3 101843065 101843565 -116193593 - L1PA13 LINE L1 -3 6160 5661 2039 168 15 20 chr3 101843565 101844016 -116193142 + L1P4 LINE L1 4978 5430 -731 24 67 0 0 chr3 101844550 101844595 -116192563 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr3 101844815 101844837 -116192321 + AT_rich Low_complexity Low_complexity 1 22 0 221 57 29 0 chr3 101846065 101846100 -116191058 + (TA)n Simple_repeat Simple_repeat 1 36 0 377 118 0 26 chr3 101846408 101846484 -116190674 - L1PA16 LINE L1 0 6166 6093 1475 211 7 26 chr3 101846546 101846854 -116190304 - AluJo SINE Alu 0 302 1 269 353 59 38 chr3 101847131 101847369 -116189789 - MIR SINE MIR -12 250 8 1159 225 44 56 chr3 101848408 101848750 -116188408 - MER58B DNA MER1_type 0 341 4 26 0 0 0 chr3 101849773 101849799 -116187359 + AT_rich Low_complexity Low_complexity 1 26 0 1140 213 53 63 chr3 101850032 101850332 -116186826 + AluJb SINE Alu 1 297 -5 278 322 93 6 chr3 101851062 101851277 -116185881 - AluYa5 SINE Alu 0 333 103 494 15 0 0 chr3 101851377 101851442 -116185716 + SVA Other Other 1320 1384 -2 1047 186 118 9 chr3 101851557 101851777 -116185381 + MSTA LTR MaLR 185 428 0 2626 180 21 8 chr3 101851777 101852289 -116184869 + MSTA-int LTR MaLR 1 519 -1132 1126 95 0 0 chr3 101852290 101852438 -116184720 + AluSp/q SINE Alu 164 311 -2 5540 186 20 23 chr3 101852438 101853527 -116183631 + MSTA-int LTR MaLR 495 1580 0 1935 160 126 5 chr3 101853528 101853909 -116183249 + MSTA LTR MaLR 2 428 0 868 252 98 12 chr3 101853914 101854323 -116182835 - L1MDa LINE L1 -2734 3672 3229 1544 217 97 39 chr3 101854372 101855063 -116182095 - L1MDa LINE L1 -4537 1869 1139 590 319 13 0 chr3 101855074 101855231 -116181927 - L1MDa LINE L1 -6066 343 185 677 212 94 24 chr3 101855257 101855427 -116181731 - L1MDa LINE L1 -6219 190 9 24 0 0 0 chr3 101855438 101855462 -116181696 + AT_rich Low_complexity Low_complexity 1 24 0 347 239 42 70 chr3 101855574 101855833 -116181325 + L1M4 LINE L1 4457 4708 -1438 256 233 9 16 chr3 101855833 101855912 -116181246 + GA-rich Low_complexity Low_complexity 3 59 0 38 22 0 0 chr3 101856085 101856130 -116181028 + AT_rich Low_complexity Low_complexity 1 45 0 1012 292 26 38 chr3 101857175 101857566 -116179592 + L1MCb LINE L1 171 556 -5489 602 162 32 108 chr3 101857664 101857849 -116179309 + L1MCb LINE L1 569 739 -5306 22 35 0 0 chr3 101857868 101857897 -116179261 + AT_rich Low_complexity Low_complexity 1 29 0 381 125 0 42 chr3 101858217 101858289 -116178869 + LTR50 LTR ERVL 1 69 -726 846 292 90 30 chr3 101858449 101859078 -116178080 + LTR50 LTR ERVL 86 795 0 3467 194 39 14 chr3 101860595 101861409 -116175749 + L1MA6 LINE L1 5465 6299 -1 246 191 213 0 chr3 101861643 101861737 -116175421 - L1ME LINE L1 -461 5660 5547 183 49 73 0 chr3 101861743 101861784 -116175374 + (TA)n Simple_repeat Simple_repeat 1 44 0 293 291 216 8 chr3 101861805 101861939 -116175219 - L1MCa LINE L1 -6244 182 21 23 54 0 0 chr3 101862206 101862243 -116174915 + AT_rich Low_complexity Low_complexity 1 37 0 1678 114 12 16 chr3 101862666 101862920 -116174238 + THE1C LTR MaLR 123 375 0 281 350 65 54 chr3 101865043 101865303 -116171855 + L3 LINE CR1 1050 1312 -265 22 0 0 0 chr3 101865908 101865930 -116171228 + AT_rich Low_complexity Low_complexity 1 22 0 1749 106 8 4 chr3 101865963 101866208 -116170950 - AluSc SINE Alu -63 246 1 1607 189 14 10 chr3 101866575 101866866 -116170292 + AluJb SINE Alu 1 292 -20 26 0 0 0 chr3 101867710 101867736 -116169422 + AT_rich Low_complexity Low_complexity 1 26 0 2428 54 3 19 chr3 101867736 101868050 -116169108 + AluY SINE Alu 1 309 -2 24 53 0 0 chr3 101868450 101868488 -116168670 + AT_rich Low_complexity Low_complexity 1 38 0 21 82 0 0 chr3 101869307 101869356 -116167802 + AT_rich Low_complexity Low_complexity 1 49 0 1526 166 38 35 chr3 101869376 101869666 -116167492 + AluSx SINE Alu 1 291 -21 28 0 0 0 chr3 101869666 101869694 -116167464 + AT_rich Low_complexity Low_complexity 1 28 0 27 49 0 0 chr3 101870225 101870266 -116166892 + AT_rich Low_complexity Low_complexity 1 41 0 6845 55 8 2 chr3 101870316 101871755 -116165403 + L1PA7 LINE L1 4722 6142 -12 686 78 0 20 chr3 101872589 101872691 -116164467 - L1PA8 LINE L1 -4 6168 6069 297 271 0 0 chr3 101873009 101873079 -116164079 + (TG)n Simple_repeat Simple_repeat 1 70 0 4070 175 39 8 chr3 101873942 101875255 -116161903 - L1PA16 LINE L1 -193 5973 4630 254 169 77 31 chr3 101876527 101876592 -116160566 - L1ME LINE L1 -295 5875 5808 1253 195 14 55 chr3 101876594 101876886 -116160272 - LTR4 LTR ERV1 0 596 317 294 207 17 0 chr3 101876972 101877030 -116160128 - LTR4 LTR ERV1 -239 357 299 627 215 96 48 chr3 101877187 101877396 -116159762 - L1ME LINE L1 -367 5803 5585 2310 139 17 3 chr3 101877399 101877758 -116159400 + THE1B LTR MaLR 1 364 0 265 143 41 0 chr3 101877758 101877807 -116159351 + THE1B-int LTR MaLR 1 51 -1529 * 25327 49 4 0 chr3 101877806 101881780 -116155378 + L1PA5 LINE L1 2186 6174 0 9538 121 33 40 chr3 101881781 101883333 -116153825 + THE1B-int LTR MaLR 39 1579 -1 779 123 54 15 chr3 101883334 101883464 -116153694 + THE1B LTR MaLR 1 135 -229 509 370 65 42 chr3 101983637 101984366 -116052792 + HERV16 LTR ERVL 710 1454 -3542 568 356 47 0 chr3 101984771 101985007 -116052151 + LTR16B LTR ERVL 127 373 -91 181 269 239 8 chr3 101986084 101986218 -116050940 + MIR SINE MIR 86 250 -12 28 0 0 0 chr3 101986234 101986262 -116050896 + AT_rich Low_complexity Low_complexity 1 28 0 41 58 0 0 chr3 101986751 101986820 -116050338 + AT_rich Low_complexity Low_complexity 1 69 0 21 0 0 0 chr3 101988526 101988547 -116048611 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 101988881 101988904 -116048254 + AT_rich Low_complexity Low_complexity 1 23 0 272 272 44 26 chr3 101990561 101990675 -116046483 + MLT1K LTR MaLR 412 527 -61 26 50 0 0 chr3 101992034 101992074 -116045084 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr3 101992288 101992309 -116044849 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr3 101992760 101992789 -116044369 + AT_rich Low_complexity Low_complexity 1 29 0 5421 235 18 2 chr3 101992923 101994177 -116042981 + L1PA16 LINE L1 3815 5087 -1059 1281 234 0 3 chr3 101994191 101994473 -116042685 + L1PA16 LINE L1 5878 6158 -8 317 127 0 0 chr3 101994497 101994560 -116042598 + L1MA7 LINE L1 6229 6291 0 234 308 55 11 chr3 101994892 101994983 -116042175 + MER5B DNA MER1_type 6 100 -78 290 296 14 0 chr3 101995084 101995155 -116042003 + MER5B DNA MER1_type 106 177 -1 182 356 17 0 chr3 101996076 101996135 -116041023 - L2 LINE L2 -40 3232 3173 1144 217 40 74 chr3 101996352 101996730 -116040428 + MLT1A1 LTR MaLR 1 365 0 192 246 0 0 chr3 101997116 101997185 -116039973 + A-rich Low_complexity Low_complexity 1 69 0 536 287 91 36 chr3 101997244 101997519 -116039639 + MLT1J2 LTR MaLR 41 330 -120 418 245 43 0 chr3 101998230 101998324 -116038834 + MER58A DNA MER1_type 1 98 -9 228 67 0 0 chr3 101998763 101998793 -116038365 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 2057 131 3 0 chr3 101999243 101999541 -116037617 + AluSx SINE Alu 2 300 -12 2154 114 0 10 chr3 101999543 101999842 -116037316 + AluSx SINE Alu 1 296 -16 474 230 15 38 chr3 102001300 102001505 -116035653 - L1MA10 LINE L1 -31 6285 5937 24 32 0 0 chr3 102001561 102001592 -116035566 + AT_rich Low_complexity Low_complexity 1 31 0 2002 135 26 58 chr3 102001744 102001893 -116035265 - THE1C LTR MaLR -8 420 268 2021 85 0 54 chr3 102001893 102002210 -116034948 - AluY SINE Alu -11 300 1 2002 135 26 58 chr3 102002210 102002444 -116034714 - THE1C LTR MaLR -160 268 1 316 71 36 0 chr3 102002457 102002513 -116034645 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 26 0 0 0 chr3 102002549 102002575 -116034583 + AT_rich Low_complexity Low_complexity 1 26 0 1782 249 48 34 chr3 102004005 102004564 -116032594 + HERVL68 LTR ERVL 2261 2827 -210 2379 206 107 16 chr3 102004914 102005540 -116031618 + MER76 LTR ERV 6 688 0 28 86 0 0 chr3 102005647 102005717 -116031441 + AT_rich Low_complexity Low_complexity 1 70 0 2898 6 0 0 chr3 102005772 102006089 -116031069 + AluYb8 SINE Alu 1 317 -1 1491 292 87 34 chr3 102009841 102011777 -116025381 - L1ME2 LINE L1 -2 6162 4131 351 258 33 46 chr3 102013456 102013607 -116023551 + L1ME LINE L1 320 468 -5602 26 0 0 0 chr3 102014107 102014133 -116023025 + AT_rich Low_complexity Low_complexity 1 26 0 33 80 0 0 chr3 102014440 102014515 -116022643 + AT_rich Low_complexity Low_complexity 1 75 0 1691 298 118 10 chr3 102014607 102014752 -116022406 + L1MEc LINE L1 90 218 -6178 200 59 29 0 chr3 102014752 102014786 -116022372 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1691 298 118 10 chr3 102014786 102015462 -116021696 + L1MEc LINE L1 218 1000 -5396 459 308 45 52 chr3 102015679 102015968 -116021190 + L1M3c LINE L1 1358 1644 -5852 2226 286 91 20 chr3 102016118 102017541 -116019617 + L1M3c LINE L1 2012 3482 -4083 1478 185 66 3 chr3 102017541 102017828 -116019330 + AluJb SINE Alu 5 309 -3 2226 286 91 20 chr3 102017828 102018085 -116019073 + L1M3c LINE L1 3482 3719 -3846 2631 283 56 61 chr3 102018169 102019188 -116017970 + L1MEc LINE L1 970 1992 -4223 279 95 0 0 chr3 102019188 102019230 -116017928 + MER11C LTR ERVK 2 43 -1028 2631 283 56 61 chr3 102019230 102021019 -116016139 + L1MEc LINE L1 1992 3787 -2428 911 270 143 56 chr3 102021022 102021485 -116015673 + MLT1E3 LTR MaLR 152 624 0 261 296 56 0 chr3 102021485 102021593 -116015565 + L1MEc LINE L1 3827 3940 -2275 8053 160 35 20 chr3 102021624 102023124 -116014034 - Tigger1 DNA MER2_type 0 2418 897 3337 161 9 14 chr3 102023147 102023791 -116013367 - L1 LINE L1 -1116 5030 4390 3220 173 13 62 chr3 102024007 102024751 -116012407 - MER67C LTR ERV1 0 710 3 624 298 104 0 chr3 102025093 102025372 -116011786 + L1ME2 LINE L1 5855 6162 -2 36 62 0 0 chr3 102025574 102025638 -116011520 + AT_rich Low_complexity Low_complexity 1 64 0 220 379 42 0 chr3 102025708 102025803 -116011355 - L2 LINE L2 -15 3257 3159 187 298 83 0 chr3 102026421 102026505 -116010653 + L3 LINE CR1 930 1020 -557 186 314 14 0 chr3 102026619 102026689 -116010469 - MIR SINE MIR -68 194 124 8003 132 26 10 chr3 102027707 102028960 -116008198 - HSMAR1 DNA Mariner -14 1273 1 249 83 0 0 chr3 102029317 102029353 -116007805 + (CA)n Simple_repeat Simple_repeat 1 36 0 1133 277 92 47 chr3 102029355 102031049 -116006109 + L1MEc LINE L1 1598 3323 -2892 * 5430 207 28 29 chr3 102031043 102032015 -116005143 + L1M1 LINE L1 4065 5045 -1324 387 0 0 0 chr3 102032015 102032058 -116005100 + (CA)n Simple_repeat Simple_repeat 2 44 0 5430 207 28 29 chr3 102032058 102032707 -116004451 + L1M1 LINE L1 5045 5693 -676 303 253 32 0 chr3 102033185 102033280 -116003878 + (TA)n Simple_repeat Simple_repeat 1 98 0 631 295 143 14 chr3 102033363 102033790 -116003368 - L1ME3A LINE L1 -86 6084 5603 27 73 0 0 chr3 102034337 102034392 -116002766 + AT_rich Low_complexity Low_complexity 1 55 0 1905 159 68 6 chr3 102034862 102035215 -116001943 + THE1C LTR MaLR 1 375 0 491 86 86 0 chr3 102035259 102035411 -116001747 + (TA)n Simple_repeat Simple_repeat 1 165 0 210 71 0 0 chr3 102035430 102035458 -116001700 + (TA)n Simple_repeat Simple_repeat 1 28 0 7178 128 172 24 chr3 102035458 102036791 -116000367 + THE1C-int LTR MaLR 51 1580 0 1579 188 44 22 chr3 102036791 102037158 -116000000 + THE1C LTR MaLR 1 375 0 1952 128 31 0 chr3 102037334 102037623 -115999535 + AluSq SINE Alu 1 298 -15 2208 161 78 10 chr3 102037986 102038384 -115998774 + MSTA LTR MaLR 3 427 -1 29 0 0 0 chr3 102039324 102039353 -115997805 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chr3 102039639 102039681 -115997477 + AT_rich Low_complexity Low_complexity 1 42 0 29 0 0 0 chr3 102040456 102040485 -115996673 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chr3 102040771 102040813 -115996345 + AT_rich Low_complexity Low_complexity 1 42 0 307 285 151 22 chr3 102041846 102042025 -115995133 + MIR3 SINE MIR 6 207 -1 21 57 0 0 chr3 102042281 102042316 -115994842 + AT_rich Low_complexity Low_complexity 1 35 0 1496 134 31 0 chr3 102042627 102042850 -115994308 + AluSp SINE Alu 1 230 -83 33 0 0 0 chr3 102042863 102042896 -115994262 + AT_rich Low_complexity Low_complexity 1 33 0 215 338 59 59 chr3 102042964 102043100 -115994058 - L2 LINE L2 0 3272 3137 24 32 0 0 chr3 102043241 102043272 -115993886 + AT_rich Low_complexity Low_complexity 1 31 0 1810 293 27 38 chr3 102043436 102044095 -115993063 + L1PA13 LINE L1 1 652 -6135 876 279 58 18 chr3 102044151 102044481 -115992677 + L1PA13 LINE L1 1245 1587 -5200 2831 193 57 31 chr3 102044484 102045132 -115992026 - L1MB3 LINE L1 -117 6066 5402 1169 258 97 14 chr3 102045136 102045496 -115991662 - MSTD LTR MaLR -6 390 1 5261 244 36 28 chr3 102045507 102047014 -115990144 - L1MB3 LINE L1 -748 5398 3874 2200 73 3 24 chr3 102047014 102047326 -115989832 - AluY SINE Alu 0 306 1 5261 244 36 28 chr3 102047326 102047505 -115989653 - L1MB3 LINE L1 -2272 3874 3698 544 192 36 6 chr3 102047505 102047672 -115989486 + CT-rich Low_complexity Low_complexity 3 174 0 217 139 0 0 chr3 102047692 102047728 -115989430 + (TTTC)n Simple_repeat Simple_repeat 1 36 0 837 162 15 14 chr3 102047728 102047839 -115989319 + CT-rich Low_complexity Low_complexity 1 110 -516 1718 156 19 47 chr3 102047839 102048036 -115989122 - AluSx SINE Alu 0 312 126 243 0 0 0 chr3 102048036 102048063 -115989095 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1718 156 19 47 chr3 102048063 102048186 -115988972 - AluSx SINE Alu -186 126 1 837 162 15 14 chr3 102048186 102048354 -115988804 + CT-rich Low_complexity Low_complexity 110 626 0 2898 283 29 12 chr3 102048354 102049635 -115987523 - L1MB3 LINE L1 -2452 3694 2392 1746 158 8 17 chr3 102049638 102049980 -115987178 - MER61C LTR ERV1 0 434 1 20520 121 26 11 chr3 102049983 102050347 -115986811 - MER61C-int LTR ERV1 -2 5215 4858 369 0 0 0 chr3 102050347 102050388 -115986770 + (CA)n Simple_repeat Simple_repeat 2 42 0 20520 121 26 11 chr3 102050388 102053231 -115983927 - MER61C-int LTR ERV1 -359 4858 1961 2834 153 104 122 chr3 102053233 102054276 -115982882 - MER61C-int LTR ERV1 -3850 1367 343 737 128 7 47 chr3 102054352 102054500 -115982658 - MER61C-int LTR ERV1 -5074 143 2 1632 155 4 52 chr3 102054500 102054855 -115982303 - MER61B LTR ERV1 0 425 1 415 195 12 0 chr3 102054920 102055002 -115982156 - L1MB3 LINE L1 -3798 2348 2266 296 281 12 12 chr3 102055011 102055093 -115982065 + L1MC4a LINE L1 6628 6709 -1099 248 269 85 0 chr3 102055156 102055286 -115981872 + L1MC4 LINE L1 6935 7075 -967 865 298 56 46 chr3 102055366 102055956 -115981202 + L1MC4 LINE L1 7295 7890 -152 21 57 0 0 chr3 102056404 102056439 -115980719 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr3 102056625 102056660 -115980498 + AT_rich Low_complexity Low_complexity 1 35 0 211 312 94 14 chr3 102056797 102056935 -115980223 + MIR SINE MIR 101 249 -13 25 0 0 0 chr3 102057142 102057167 -115979991 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr3 102057403 102057433 -115979725 + AT_rich Low_complexity Low_complexity 1 30 0 291 71 0 0 chr3 102058480 102058522 -115978636 + (TG)n Simple_repeat Simple_repeat 2 43 0 46 19 0 0 chr3 102059127 102059180 -115977978 + AT_rich Low_complexity Low_complexity 1 53 0 2366 86 3 13 chr3 102059916 102060231 -115976927 + AluSx SINE Alu 1 312 0 196 359 26 0 chr3 102060564 102060642 -115976516 + L2 LINE L2 3234 3313 0 262 322 85 55 chr3 102061145 102061381 -115975777 + L2 LINE L2 2414 2656 -658 1298 205 52 23 chr3 102061823 102062169 -115974989 + MLT1A1 LTR MaLR 10 365 0 232 250 18 0 chr3 102062814 102062870 -115974288 + CT-rich Low_complexity Low_complexity 5 61 0 284 325 12 0 chr3 102062872 102062952 -115974206 - MLT1J1 LTR MaLR -271 175 95 2186 241 74 35 chr3 102062955 102063699 -115973459 + HERVL68 LTR ERVL 2055 2827 -210 2381 206 107 16 chr3 102064049 102064675 -115972483 + MER76 LTR ERV 6 688 0 28 86 0 0 chr3 102064782 102064852 -115972306 + AT_rich Low_complexity Low_complexity 1 70 0 2655 185 14 30 chr3 102066431 102066518 -115970640 + L1MA4 LINE L1 4889 4976 -1324 270 0 0 0 chr3 102066518 102066548 -115970610 + (CA)n Simple_repeat Simple_repeat 2 31 0 2655 185 14 30 chr3 102066548 102067360 -115969798 + L1MA4 LINE L1 4976 5781 -519 369 0 0 0 chr3 102067361 102067402 -115969756 + (TA)n Simple_repeat Simple_repeat 2 42 0 1234 89 0 0 chr3 102067402 102067559 -115969599 - AluY SINE Alu -154 157 1 244 0 27 27 chr3 102067597 102067634 -115969524 + (TA)n Simple_repeat Simple_repeat 1 37 0 2152 210 22 6 chr3 102067714 102068218 -115968940 + L1MA4 LINE L1 5783 6294 -6 227 79 26 0 chr3 102069485 102069523 -115967635 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 214 192 0 19 chr3 102069677 102069729 -115967429 + CT-rich Low_complexity Low_complexity 2 52 0 2454 60 0 22 chr3 102070065 102070379 -115966779 + AluY SINE Alu 3 309 -2 886 240 26 9 chr3 102070417 102070650 -115966508 + L1MC1 LINE L1 4044 4280 -1866 4528 156 16 33 chr3 102070677 102071549 -115965609 + L1MC1 LINE L1 5467 6323 -10 998 275 73 18 chr3 102071564 102071891 -115965267 - MER77 LTR ERV1 -207 398 54 261 280 0 13 chr3 102072097 102072172 -115964986 + HERVL68 LTR ERVL 2037 2110 -927 367 253 61 0 chr3 102072172 102072271 -115964887 + L1MC4 LINE L1 6614 6718 -1324 2200 114 0 9 chr3 102072273 102072588 -115964570 - AluSx SINE Alu 0 312 1 993 130 39 0 chr3 102072592 102072746 -115964412 - AluSg/x SINE Alu -19 293 134 2140 94 17 0 chr3 102072746 102073034 -115964124 - AluY SINE Alu -7 304 12 833 267 14 5 chr3 102073567 102073784 -115963374 + HERVL68 LTR ERVL 5289 5507 -23 1133 246 40 91 chr3 102073802 102074274 -115962884 + LTR40b LTR ERVL 1 448 -14 602 187 0 96 chr3 102074292 102074458 -115962700 + L1M4 LINE L1 4698 4847 -1299 203 0 37 0 chr3 102074461 102074488 -115962670 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1899 120 36 0 chr3 102074490 102074766 -115962392 - AluSx SINE Alu -26 286 1 3868 209 35 44 chr3 102074781 102075979 -115961179 - L1MD1 LINE L1 -11 6231 5044 1713 247 137 90 chr3 102076010 102076944 -115960214 - L1MDa LINE L1 -965 5575 4474 614 49 25 0 chr3 102076944 102077025 -115960133 - AluSg/x SINE Alu -9 300 218 1713 247 137 90 chr3 102077025 102077439 -115959719 - L1MDa LINE L1 -2066 4474 4081 1274 279 60 9 chr3 102077468 102078035 -115959123 - L1MDa LINE L1 -2686 3854 3259 687 266 30 0 chr3 102078263 102078462 -115958696 + L1ME1 LINE L1 2395 2599 -3547 270 0 0 0 chr3 102078473 102078503 -115958655 + (CA)n Simple_repeat Simple_repeat 1 30 0 227 182 30 0 chr3 102078515 102078581 -115958577 + (CAGAGA)n Simple_repeat Simple_repeat 3 70 0 1407 196 41 35 chr3 102078590 102078932 -115958226 - MLT2D LTR ERVL -66 348 5 5716 250 91 21 chr3 102079083 102080751 -115956407 - L1MDa LINE L1 -4253 2287 471 3764 55 36 0 chr3 102080751 102081224 -115955934 - LTR2B LTR ERV1 0 490 1 5716 250 91 21 chr3 102081224 102081442 -115955716 - L1MDa LINE L1 -6069 471 270 21 0 0 0 chr3 102081516 102081537 -115955621 + AT_rich Low_complexity Low_complexity 1 21 0 2038 252 79 35 chr3 102081537 102082674 -115954484 + L1ME1 LINE L1 4971 6162 -4 609 342 86 25 chr3 102082961 102083588 -115953570 + L2 LINE L2 2645 3312 -1 1951 144 7 0 chr3 102084608 102084907 -115952251 - AluSx SINE Alu -9 303 3 297 0 0 0 chr3 102085155 102085188 -115951970 + (TG)n Simple_repeat Simple_repeat 2 34 0 27 0 0 0 chr3 102086057 102086084 -115951074 + AT_rich Low_complexity Low_complexity 1 27 0 313 349 87 25 chr3 102086674 102086949 -115950209 + MLT1J2 LTR MaLR 100 391 -59 294 352 45 11 chr3 102087032 102087208 -115949950 - MIR SINE MIR 0 262 81 3645 147 41 30 chr3 102087374 102088100 -115949058 - MER50 LTR ERV1 0 734 1 195 301 27 27 chr3 102088379 102088452 -115948706 + L2 LINE L2 3194 3266 -6 2503 189 109 35 chr3 102088487 102089164 -115947994 - LTR8A LTR ERV1 0 727 1 207 69 0 0 chr3 102089264 102089293 -115947865 + (CCA)n Simple_repeat Simple_repeat 1 29 0 1597 123 8 12 chr3 102089342 102089586 -115947572 - AluSq SINE Alu -8 305 63 1638 216 57 34 chr3 102089586 102089815 -115947343 - LTR2 LTR ERV1 0 449 227 186 43 0 0 chr3 102089815 102089838 -115947320 + (CAGAA)n Simple_repeat Simple_repeat 1 23 0 1638 216 57 34 chr3 102089838 102090047 -115947111 - LTR2 LTR ERV1 -222 227 1 421 185 0 3 chr3 102090047 102090132 -115947026 - AluS SINE Alu -237 66 3 225 0 0 0 chr3 102090440 102090465 -115946693 + (TG)n Simple_repeat Simple_repeat 2 26 0 457 261 47 31 chr3 102091268 102091463 -115945695 - L1MD3 LINE L1 -1043 6765 6586 36 91 0 0 chr3 102091466 102091565 -115945593 + AT_rich Low_complexity Low_complexity 1 99 0 21 0 0 0 chr3 102091658 102091679 -115945479 + AT_rich Low_complexity Low_complexity 1 21 0 308 299 64 92 chr3 102091695 102092023 -115945135 - L1MC4a LINE L1 -1370 6438 6120 1745 148 167 14 chr3 102092816 102093187 -115943971 + MSTA LTR MaLR 1 428 0 223 357 0 45 chr3 102093254 102093366 -115943792 + MIR SINE MIR 48 154 -108 274 294 54 0 chr3 102093421 102093513 -115943645 + MIR SINE MIR 147 243 -19 26 0 0 0 chr3 102093827 102093853 -115943305 + AT_rich Low_complexity Low_complexity 1 26 0 369 275 57 55 chr3 102095138 102095578 -115941580 + L1ME1 LINE L1 2112 2552 -3594 234 304 94 12 chr3 102095817 102095988 -115941170 + L1ME1 LINE L1 4762 4946 -1200 695 273 0 5 chr3 102096002 102096200 -115940958 + L1ME1 LINE L1 5317 5513 -649 2975 166 19 36 chr3 102096200 102096790 -115940368 + LTR22 LTR ERVK 1 580 0 798 275 49 34 chr3 102096878 102097263 -115939895 + L1ME1 LINE L1 5747 6137 -29 238 309 49 32 chr3 102097545 102097668 -115939490 + LTR16C LTR ERVL 201 325 -166 2125 85 7 17 chr3 102098290 102098583 -115938575 - AluY SINE Alu -21 290 1 605 155 0 29 chr3 102099706 102099809 -115937349 + L1PA15 LINE L1 6045 6144 -21 23 33 0 0 chr3 102100845 102100875 -115936283 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 102101293 102101314 -115935844 + AT_rich Low_complexity Low_complexity 1 21 0 848 183 157 13 chr3 102102506 102102741 -115934417 + L1PA16 LINE L1 5893 6161 -5 217 200 0 57 chr3 102103638 102103708 -115933450 + T-rich Low_complexity Low_complexity 1 66 0 1959 176 45 21 chr3 102103747 102104167 -115932991 - MSTB1 LTR MaLR 0 432 3 354 107 0 0 chr3 102104341 102104397 -115932761 + (TA)n Simple_repeat Simple_repeat 1 56 0 282 95 0 0 chr3 102104396 102104438 -115932720 + (CA)n Simple_repeat Simple_repeat 2 43 0 * 1441 126 9 17 chr3 102104839 102105070 -115932088 + MER30 DNA MER1_type 2 230 0 24 32 0 0 chr3 102105573 102105604 -115931554 + AT_rich Low_complexity Low_complexity 1 31 0 218 209 0 0 chr3 102106461 102106504 -115930654 + (TTG)n Simple_repeat Simple_repeat 3 45 0 4234 250 69 26 chr3 102107156 102109481 -115927677 + L1PB3 LINE L1 3 1647 -5216 * 10367 235 47 28 chr3 102109471 102111227 -115925931 + L1PB3 LINE L1 1504 3224 -3638 1668 195 7 0 chr3 102111227 102111509 -115925649 + AluSx SINE Alu 1 284 -28 10367 235 47 28 chr3 102111509 102113981 -115923177 + L1PB3 LINE L1 3224 5870 -992 4744 139 33 18 chr3 102113994 102114255 -115922903 + L1PB3 LINE L1 6034 6290 -580 2341 91 0 0 chr3 102114255 102114551 -115922607 - AluY SINE Alu -15 296 1 4744 139 33 18 chr3 102114551 102115114 -115922044 + L1PB3 LINE L1 6290 6870 0 387 155 48 48 chr3 102115575 102115659 -115921499 + MER53 DNA DNA 104 187 -2 189 147 0 0 chr3 102116719 102116753 -115920405 + (A)n Simple_repeat Simple_repeat 1 34 0 2095 132 0 0 chr3 102116785 102117095 -115920063 + AluSx SINE Alu 1 310 -2 450 312 75 30 chr3 102117500 102117872 -115919286 + HAL1b LINE L1 256 644 -704 314 273 133 21 chr3 102117926 102118069 -115919089 + MLT1E LTR MaLR 1 159 -434 * 795 216 115 0 chr3 102118044 102118252 -115918906 + MLT1E1 LTR MaLR 107 338 -316 238 194 0 0 chr3 102118220 102118256 -115918902 + MLT1E LTR MaLR 201 236 -357 * 636 275 21 10 chr3 102118300 102118493 -115918665 + MLT1E1 LTR MaLR 460 654 0 3937 181 60 65 chr3 102119555 102120599 -115916559 - L1MA7 LINE L1 0 6291 5224 13039 163 17 9 chr3 102120602 102120942 -115916216 + Tigger1 DNA MER2_type 5 341 -2077 534 67 0 0 chr3 102120942 102121017 -115916141 + (TC)n Simple_repeat Simple_repeat 2 76 0 13039 163 17 9 chr3 102121017 102122958 -115914200 + Tigger1 DNA MER2_type 341 2305 -113 1355 170 8 38 chr3 102122957 102123018 -115914140 + Tigger1 DNA MER2_type 2161 2222 -196 * 1570 184 42 0 chr3 102123018 102123301 -115913857 - AluSp SINE Alu -18 295 1 1355 170 8 38 chr3 102123301 102123504 -115913654 + Tigger1 DNA MER2_type 2222 2417 -1 2357 203 7 47 chr3 102123508 102124085 -115913073 - L1MA7 LINE L1 -923 5223 4670 26 64 0 0 chr3 102124112 102124159 -115912999 + AT_rich Low_complexity Low_complexity 1 47 0 34 55 0 0 chr3 102125566 102125621 -115911537 + AT_rich Low_complexity Low_complexity 1 55 0 257 274 189 0 chr3 102127212 102127307 -115909851 - L2 LINE L2 0 3313 3201 237 354 0 13 chr3 102127789 102127868 -115909290 + LTR16A LTR ERVL 258 335 -115 197 253 40 53 chr3 102128141 102128216 -115908942 + L2 LINE L2 3234 3307 -6 428 298 8 8 chr3 102128226 102128347 -115908811 - LTR28 LTR ERV1 0 1020 900 1152 223 86 120 chr3 102128397 102129197 -115907961 - LTR1B LTR ERV1 -48 972 1 3785 177 38 41 chr3 102129340 102130866 -115906292 + L1MA9 LINE L1 4536 6079 -233 295 167 0 15 chr3 102130910 102130976 -115906182 + L1MA9 LINE L1 6203 6267 -45 636 212 0 46 chr3 102130992 102131170 -115905988 - MER3 DNA MER1_type -62 147 2 189 195 0 0 chr3 102131753 102131794 -115905364 + (TA)n Simple_repeat Simple_repeat 1 41 0 212 355 28 9 chr3 102132263 102132370 -115904788 - L2 LINE L2 0 3313 3205 26 74 0 0 chr3 102132497 102132551 -115904607 + AT_rich Low_complexity Low_complexity 1 54 0 189 224 0 0 chr3 102133276 102133334 -115903824 + (TA)n Simple_repeat Simple_repeat 2 59 0 1470 99 10 0 chr3 102133914 102134116 -115903042 - AluSg/x SINE Alu -16 296 93 23 0 0 0 chr3 102135212 102135235 -115901923 + AT_rich Low_complexity Low_complexity 1 23 0 966 248 93 29 chr3 102136046 102136357 -115900801 - L1ME LINE L1 -547 5615 5285 21 71 0 0 chr3 102136441 102136483 -115900675 + AT_rich Low_complexity Low_complexity 1 42 0 635 185 34 41 chr3 102136483 102136629 -115900529 - L1ME LINE L1 -458 5706 5562 1508 291 74 4 chr3 102136638 102137113 -115900045 + LTR40a LTR ERVL 12 519 0 240 304 74 7 chr3 102137210 102137345 -115899813 - L1MDa LINE L1 -4635 1905 1762 590 249 123 108 chr3 102137375 102137764 -115899394 - MER57A LTR ERV1 -6 397 3 1052 308 77 38 chr3 102137952 102138215 -115898943 - L1MDa LINE L1 -5176 1545 1294 2104 197 44 2 chr3 102138215 102138626 -115898532 - MSTA LTR MaLR 0 428 1 1052 308 77 38 chr3 102138626 102139481 -115897677 - L1MDa LINE L1 -5427 1294 384 21 57 0 0 chr3 102139685 102139720 -115897438 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr3 102141873 102141897 -115895261 + AT_rich Low_complexity Low_complexity 1 24 0 1673 215 2 49 chr3 102142251 102142660 -115894498 - MLT1B LTR MaLR 0 390 1 27 49 0 0 chr3 102142828 102142869 -115894289 + AT_rich Low_complexity Low_complexity 1 41 0 1960 132 14 3 chr3 102143659 102143954 -115893204 + AluSx SINE Alu 3 300 -12 213 39 0 0 chr3 102144153 102144179 -115892979 + (A)n Simple_repeat Simple_repeat 1 26 0 2379 132 5 13 chr3 102145011 102145389 -115891769 - THE1C LTR MaLR 0 375 1 9440 127 34 41 chr3 102145389 102146980 -115890178 - THE1C-int LTR MaLR 0 1580 1 1217 147 16 0 chr3 102146980 102147171 -115889987 - THE1C LTR MaLR 0 375 182 1840 151 31 38 chr3 102147172 102147490 -115889668 + THE1B LTR MaLR 1 316 -48 818 79 9 9 chr3 102147501 102147615 -115889543 - THE1C LTR MaLR -261 114 1 21 36 0 0 chr3 102147948 102147976 -115889182 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 102147997 102148025 -115889133 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr3 102148043 102148077 -115889081 + AT_rich Low_complexity Low_complexity 1 34 0 2359 81 3 0 chr3 102149066 102149361 -115887797 + AluY SINE Alu 1 296 -15 9715 64 5 7 chr3 102150093 102151357 -115885801 + L1PA3 LINE L1 1 1261 -4885 * 24577 36 0 1 chr3 102151343 102155132 -115882026 + L1PA3 LINE L1 2382 6166 0 23 54 0 0 chr3 102155597 102155634 -115881524 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr3 102157225 102157248 -115879910 + AT_rich Low_complexity Low_complexity 1 23 0 2307 158 26 0 chr3 102157315 102157694 -115879464 - MER61D LTR ERV1 0 501 113 279 192 15 16 chr3 102157697 102157765 -115879393 - LTR28 LTR ERV1 -563 73 10 188 347 21 21 chr3 102157766 102157861 -115879297 - MER5A DNA MER1_type -9 180 86 604 247 58 68 chr3 102157905 102157981 -115879177 + MER5A DNA MER1_type 2 77 -112 2092 120 0 0 chr3 102157981 102158265 -115878893 + AluSx SINE Alu 3 286 -26 189 0 0 0 chr3 102158271 102158292 -115878866 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 604 247 58 68 chr3 102158292 102158398 -115878760 + MER5A DNA MER1_type 82 189 0 369 306 71 11 chr3 102158518 102158701 -115878457 + MIR SINE MIR 66 259 -3 201 39 0 0 chr3 102159171 102159197 -115877961 + (CCA)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr3 102159481 102159503 -115877655 + AT_rich Low_complexity Low_complexity 1 22 0 243 258 16 0 chr3 102160761 102160823 -115876335 + (CATA)n Simple_repeat Simple_repeat 3 65 0 2170 116 0 10 chr3 102161453 102161763 -115875395 + AluSx SINE Alu 1 307 -5 329 235 96 17 chr3 102162002 102162117 -115875041 + MER34C LTR ERV1 89 212 -373 234 304 54 0 chr3 102162152 102162244 -115874914 + LTR48 LTR ERV1 379 475 -312 480 231 31 100 chr3 102162421 102162650 -115874508 - LTR49 LTR ERV1 -10 585 373 507 145 107 107 chr3 102162835 102162908 -115874250 - MER34C LTR ERV1 -442 143 67 2275 54 7 4 chr3 102162908 102163213 -115873945 + AluY SINE Alu 1 306 0 507 145 107 107 chr3 102163213 102163269 -115873889 - MER34C LTR ERV1 -517 68 13 21 0 0 0 chr3 102163450 102163471 -115873687 + AT_rich Low_complexity Low_complexity 1 21 0 1621 108 39 0 chr3 102164039 102164271 -115872887 - AluSx SINE Alu -12 300 60 372 290 16 8 chr3 102164329 102164453 -115872705 + GA-rich Low_complexity Low_complexity 3 127 0 23 0 0 0 chr3 102165346 102165369 -115871789 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr3 102165765 102165802 -115871356 + AT_rich Low_complexity Low_complexity 1 37 0 184 111 0 178 chr3 102166654 102166699 -115870459 - L2 LINE L2 -22 3250 3214 319 333 0 0 chr3 102166801 102166900 -115870258 - MIR SINE MIR -109 153 55 1631 189 118 52 chr3 102166900 102167460 -115869698 + L1MA7 LINE L1 5413 6009 -282 457 184 70 26 chr3 102167547 102167607 -115869551 + MER41E LTR ERV1 1 57 -455 3729 137 3 78 chr3 102167607 102168354 -115868804 - LTR8 LTR ERV1 0 691 1 457 184 70 26 chr3 102168354 102168407 -115868751 + MER41E LTR ERV1 57 119 -393 22 0 0 0 chr3 102168722 102168744 -115868414 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 102169548 102169571 -115867587 + AT_rich Low_complexity Low_complexity 1 23 0 2038 130 0 10 chr3 102170212 102170519 -115866639 - AluSg SINE Alu -6 304 1 194 352 59 78 chr3 102171478 102171734 -115865424 + L2 LINE L2 2235 2485 -829 21 0 0 0 chr3 102171899 102171920 -115865238 + AT_rich Low_complexity Low_complexity 1 21 0 4012 226 54 12 chr3 102174398 102175396 -115861762 - MER45B DNA AcHobo 0 1040 1 4525 183 20 37 chr3 102175429 102175703 -115861455 + MER54A LTR ERVL 3 280 -621 1896 159 0 13 chr3 102175703 102176017 -115861141 + AluSg SINE Alu 1 310 0 4525 183 20 37 chr3 102176017 102176657 -115860501 + MER54A LTR ERVL 280 901 0 467 206 38 23 chr3 102177102 102177233 -115859925 - Charlie4 DNA MER1_type -1778 183 51 22 70 0 0 chr3 102177909 102177952 -115859206 + AT_rich Low_complexity Low_complexity 1 43 0 596 172 59 41 chr3 102178043 102178212 -115858946 + AluSx SINE Alu 1 172 -140 2958 206 28 17 chr3 102180181 102180942 -115856216 - L1 LINE L1 -1379 4767 3999 671 239 96 65 chr3 102180939 102181511 -115855647 - L1 LINE L1 -2892 3254 2665 * 1667 107 18 143 chr3 102181722 102182114 -115855044 - THE1C-int LTR MaLR -1306 345 3 1174 157 16 0 chr3 102182116 102182307 -115854851 - THE1C LTR MaLR 0 375 182 1194 232 38 35 chr3 102182308 102182623 -115854535 + THE1B LTR MaLR 1 316 -48 2610 132 42 0 chr3 102183080 102183489 -115853669 + MER41E LTR ERV1 87 512 0 736 168 6 42 chr3 102183489 102183656 -115853502 + L1MA7 LINE L1 6006 6166 -125 835 244 22 99 chr3 102183853 102184124 -115853034 + MLT1A2 LTR MaLR 1 232 -142 2192 91 10 0 chr3 102184124 102184432 -115852726 + AluY SINE Alu 1 311 0 835 244 22 99 chr3 102184432 102184565 -115852593 + MLT1A2 LTR MaLR 232 374 0 2187 101 13 3 chr3 102184606 102184913 -115852245 - AluY SINE Alu -1 310 1 33 0 0 0 chr3 102185685 102185718 -115851440 + AT_rich Low_complexity Low_complexity 1 33 0 208 127 1 39 chr3 102185903 102185962 -115851196 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 1994 186 18 12 chr3 102186075 102186474 -115850684 + MER57A LTR ERV1 3 403 0 186 171 0 0 chr3 102186539 102186580 -115850578 + (CACCAT)n Simple_repeat Simple_repeat 4 44 0 26 0 0 0 chr3 102186699 102186725 -115850433 + AT_rich Low_complexity Low_complexity 1 26 0 420 20 0 0 chr3 102187396 102187445 -115849713 + (TA)n Simple_repeat Simple_repeat 1 49 0 888 210 99 83 chr3 102188012 102188061 -115849097 + L1M4b LINE L1 630 677 -5603 2212 104 3 3 chr3 102188061 102188370 -115848788 + AluSc SINE Alu 1 309 0 888 210 99 83 chr3 102188370 102188490 -115848668 + L1M4b LINE L1 677 794 -5486 180 97 0 0 chr3 102188490 102188521 -115848637 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 888 210 99 83 chr3 102188521 102188972 -115848186 + L1M4b LINE L1 794 1239 -5041 1991 111 13 29 chr3 102188977 102189591 -115847567 + MER4A LTR ERV1 101 664 0 232 194 194 0 chr3 102189596 102189663 -115847495 + L1M4b LINE L1 1366 1445 -4835 336 267 6 27 chr3 102189666 102189797 -115847361 + L1M4b LINE L1 1495 2000 -4383 332 302 161 30 chr3 102189802 102190107 -115847051 + L1M4b LINE L1 2043 2387 -4176 565 281 35 11 chr3 102190132 102190417 -115846741 + L1M4b LINE L1 2358 2649 -3733 * 5439 259 53 37 chr3 102190415 102192773 -115844385 + L1M4b LINE L1 2970 5366 -1016 2158 242 45 40 chr3 102193344 102194116 -115843042 + L1MB8 LINE L1 4543 5318 -828 2755 243 39 34 chr3 102194138 102195027 -115842131 + L1MB8 LINE L1 5284 6177 -1 34 24 0 0 chr3 102195306 102195347 -115841811 + AT_rich Low_complexity Low_complexity 1 41 0 1674 121 9 143 chr3 102195374 102195794 -115841364 - THE1B LTR MaLR 0 364 1 324 363 0 0 chr3 102196484 102196644 -115840514 + GA-rich Low_complexity Low_complexity 1 160 0 21 0 0 0 chr3 102197063 102197084 -115840074 + AT_rich Low_complexity Low_complexity 1 21 0 398 157 196 23 chr3 102200171 102200402 -115836756 + AluJb SINE Alu 1 301 -1 303 250 164 10 chr3 102200597 102200701 -115836457 + MLT1E2 LTR MaLR 283 402 -224 2088 120 3 0 chr3 102200782 102201074 -115836084 + AluSc SINE Alu 1 293 -16 3214 174 113 16 chr3 102201152 102201905 -115835253 + LTR1B LTR ERV1 1 826 0 303 275 12 0 chr3 102202128 102202208 -115834950 + L2 LINE L2 3229 3309 -4 260 374 0 61 chr3 102202731 102202862 -115834296 - L2 LINE L2 -13 3259 3137 2149 190 26 54 chr3 102203632 102203918 -115833240 + L1M3 LINE L1 5047 5340 -828 195 42 0 0 chr3 102203918 102203942 -115833216 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 2149 190 26 54 chr3 102203942 102204352 -115832806 + L1M3 LINE L1 5340 5716 -452 495 168 0 0 chr3 102205039 102205158 -115832000 + (TA)n Simple_repeat Simple_repeat 1 119 0 316 264 61 68 chr3 102205803 102205951 -115831207 + L1MC/D LINE L1 3313 3459 -2687 803 284 149 11 chr3 102205977 102206810 -115830348 + L1MC/D LINE L1 3528 4475 -1671 725 246 19 27 chr3 102206804 102207064 -115830094 - L1MEc LINE L1 -5525 871 614 * 4394 221 48 58 chr3 102207164 102208570 -115828588 + L1MC3 LINE L1 5723 7114 -671 1784 258 46 37 chr3 102208678 102209694 -115827464 + L1MC/D LINE L1 4574 5593 -749 1212 80 0 6 chr3 102209798 102209960 -115827198 + AluYa5 SINE Alu 148 308 -3 26 30 0 0 chr3 102209992 102210025 -115827133 + AT_rich Low_complexity Low_complexity 1 33 0 1425 131 0 0 chr3 102210806 102211005 -115826153 - AluSg/x SINE Alu -15 297 99 438 103 0 0 chr3 102211577 102211645 -115825513 + L1PA5 LINE L1 6086 6153 -1 21 0 0 0 chr3 102211645 102211666 -115825492 + AT_rich Low_complexity Low_complexity 1 21 0 46 19 0 0 chr3 102212047 102212100 -115825058 + AT_rich Low_complexity Low_complexity 1 53 0 477 286 53 15 chr3 102212811 102213073 -115824085 + L1MEc LINE L1 1205 1476 -4920 373 325 64 49 chr3 102213094 102213297 -115823861 + L1MEc LINE L1 1579 1784 -4612 1155 289 93 32 chr3 102213392 102213917 -115823241 - MER68 LTR ERV1 0 562 6 372 225 84 49 chr3 102214265 102214407 -115822751 + L1MEc LINE L1 2280 2426 -3789 462 237 100 56 chr3 102214510 102214742 -115822416 + L1M4 LINE L1 4406 4648 -1498 246 150 33 0 chr3 102214937 102214997 -115822161 - L1MA7 LINE L1 -5 6286 6225 1911 219 85 2 chr3 102215136 102215584 -115821574 - MER31A LTR ERV1 0 485 1 200 33 0 33 chr3 102215677 102215707 -115821451 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 24 32 0 0 chr3 102217409 102217440 -115819718 + AT_rich Low_complexity Low_complexity 1 31 0 339 190 20 10 chr3 102217762 102217862 -115819296 - L1MA8 LINE L1 -4 6287 6187 189 0 0 0 chr3 102218703 102218724 -115818434 + (T)n Simple_repeat Simple_repeat 1 21 0 24 32 0 0 chr3 102222234 102222265 -115814893 + AT_rich Low_complexity Low_complexity 1 31 0 1276 187 45 0 chr3 102223996 102224264 -115812894 - L1MB1 LINE L1 -1 6167 5888 3028 17 0 0 chr3 102224367 102224713 -115812445 - L1PA2 LINE L1 -148 6007 5662 1648 192 11 27 chr3 102225246 102225611 -115811547 - L1PA16 LINE L1 0 6166 5808 332 310 26 17 chr3 102225855 102225971 -115811187 + L1MC4 LINE L1 7756 7872 -170 1088 173 15 132 chr3 102226363 102226705 -115810453 + LTR39 LTR ERV1 1 302 -481 855 246 11 11 chr3 102226780 102226967 -115810191 + LTR39 LTR ERV1 597 783 0 22 70 0 0 chr3 102227335 102227378 -115809780 + AT_rich Low_complexity Low_complexity 1 43 0 374 156 0 219 chr3 102227544 102227782 -115809376 + MER53 DNA DNA 4 189 0 554 126 11 0 chr3 102229070 102229157 -115808001 + AluSg/x SINE Alu 208 295 -17 355 265 0 20 chr3 102229495 102229593 -115807565 + GA-rich Low_complexity Low_complexity 3 98 0 462 36 0 0 chr3 102229709 102229765 -115807393 + (TA)n Simple_repeat Simple_repeat 2 57 0 504 86 0 0 chr3 102230825 102230895 -115806263 + (TA)n Simple_repeat Simple_repeat 2 71 0 246 318 0 11 chr3 102231226 102231314 -115805844 + L1ME3A LINE L1 6078 6164 -6 1986 117 3 3 chr3 102231513 102231796 -115805362 - AluSp SINE Alu -30 283 1 745 246 38 9 chr3 102231835 102232084 -115805074 - L1ME3A LINE L1 -177 5993 5738 1494 197 46 46 chr3 102232104 102232494 -115804664 - MLT1B LTR MaLR 0 390 1 1942 270 73 20 chr3 102232516 102233760 -115803398 - L1ME1 LINE L1 -222 5944 4620 2250 90 0 0 chr3 102233760 102234071 -115803087 - AluYa5 SINE Alu 0 311 1 1942 270 73 20 chr3 102234071 102234210 -115802948 - L1ME1 LINE L1 -1546 4620 4490 23 78 0 0 chr3 102234326 102234377 -115802781 + AT_rich Low_complexity Low_complexity 1 51 0 852 256 56 39 chr3 102234402 102234687 -115802471 - LTR53 LTR ERVL -229 290 1 22 56 0 0 chr3 102234869 102234905 -115802253 + AT_rich Low_complexity Low_complexity 1 36 0 228 163 11 76 chr3 102234905 102234997 -115802161 + (TTTAA)n Simple_repeat Simple_repeat 2 87 0 252 54 0 81 chr3 102235099 102235173 -115801985 + (TA)n Simple_repeat Simple_repeat 1 68 0 28 48 0 0 chr3 102235191 102235233 -115801925 + AT_rich Low_complexity Low_complexity 1 42 0 229 211 0 0 chr3 102235625 102235677 -115801481 + T-rich Low_complexity Low_complexity 1 52 0 624 159 50 14 chr3 102235782 102235924 -115801234 - LTR10A LTR ERV1 0 547 405 1243 71 7 0 chr3 102235931 102236086 -115801072 - AluY SINE Alu -3 308 153 1905 170 81 15 chr3 102236086 102236481 -115800677 - LTR10A LTR ERV1 -188 421 1 267 91 45 0 chr3 102236504 102236548 -115800610 - LTR10B LTR ERV1 -496 51 6 196 331 125 16 chr3 102236637 102236821 -115800337 - L2 LINE L2 -71 3242 3039 451 317 151 41 chr3 102237534 102237853 -115799305 - LTR33 LTR ERVL -167 354 1 20059 186 13 19 chr3 102238162 102238502 -115798656 + L1P LINE L1 643 983 -5163 180 77 0 0 chr3 102238502 102238528 -115798630 + (CAA)n Simple_repeat Simple_repeat 2 27 0 20059 186 13 19 chr3 102238528 102242301 -115794857 + L1P LINE L1 983 4733 -1413 265 104 42 0 chr3 102242404 102242489 -115794669 + L1PA10 LINE L1 6112 6168 0 228 100 0 0 chr3 102244872 102244912 -115792246 + (TG)n Simple_repeat Simple_repeat 1 40 0 1524 137 36 71 chr3 102245454 102245812 -115791346 - MER4A LTR ERV1 0 664 261 3265 122 24 55 chr3 102245891 102246522 -115790636 - MER4-int LTR ERV1 -2 6596 5986 * 4636 95 42 42 chr3 102246512 102247322 -115789836 - MER4-int LTR ERV1 -860 4155 3346 3948 93 80 24 chr3 102247422 102248089 -115789069 - MER4-int LTR ERV1 -1977 4621 3918 2239 97 64 87 chr3 102248090 102248605 -115788553 - MER4-int LTR ERV1 -3359 3239 2737 1347 132 74 12 chr3 102248605 102248847 -115788311 + LTR8 LTR ERV1 1 257 -434 3539 80 72 80 chr3 102248847 102249329 -115787829 - MER4-int LTR ERV1 -4103 2495 2018 2115 109 0 3 chr3 102249329 102249640 -115787518 + AluSq SINE Alu 1 310 0 3539 80 72 80 chr3 102249640 102249854 -115787304 - MER4-int LTR ERV1 -4580 2018 1804 1350 123 81 58 chr3 102249852 102250234 -115786924 - MER4-int LTR ERV1 -4210 1268 510 * 348 140 6 183 chr3 102250235 102250399 -115786759 - MER4-int LTR ERV1 -5713 885 751 23 0 0 0 chr3 102250633 102250656 -115786502 + AT_rich Low_complexity Low_complexity 1 23 0 1641 260 60 41 chr3 102250690 102251472 -115785686 + L1M4 LINE L1 3520 4316 -1830 319 260 65 52 chr3 102251792 102252023 -115785135 + L1M4 LINE L1 4303 4536 -1610 1672 168 18 14 chr3 102252130 102252472 -115784686 - MER4A LTR ERV1 -1 663 261 255 125 375 14 chr3 102252472 102252544 -115784614 - MER4A LTR ERV1 -566 98 1 2008 97 0 25 chr3 102252725 102253003 -115784155 - AluSc SINE Alu -6 303 33 1403 173 32 51 chr3 102253012 102253324 -115783834 + MER67D LTR ERV1 6 311 -203 720 285 8 11 chr3 102253611 102253871 -115783287 + L1MCb LINE L1 555 813 -5094 393 251 60 65 chr3 102253902 102254095 -115783063 + L1MCb LINE L1 2287 2526 -4081 186 43 0 0 chr3 102254095 102254118 -115783040 + (CAA)n Simple_repeat Simple_repeat 2 24 0 393 251 60 65 chr3 102254118 102254254 -115782904 + L1MCb LINE L1 2526 2661 -3946 669 261 142 22 chr3 102254265 102254675 -115782483 + L1MCb LINE L1 2708 3166 -3260 238 241 89 25 chr3 102254791 102254870 -115782288 + MLT1F1 LTR MaLR 53 136 -431 1044 229 21 0 chr3 102254879 102255115 -115782043 + L1MC3 LINE L1 7208 7448 -337 6886 193 9 36 chr3 102255263 102257955 -115779203 + L1P3 LINE L1 1 2672 -3789 6008 116 4 9 chr3 102257955 102259266 -115777892 + L1PA8 LINE L1 4857 6172 0 216 191 29 38 chr3 102259468 102259573 -115777585 + (TTA)n Simple_repeat Simple_repeat 2 105 0 353 298 104 70 chr3 102260039 102260395 -115776763 + L1M4 LINE L1 4936 5303 -843 273 241 51 22 chr3 102260407 102260544 -115776614 + L1P5 LINE L1 5314 5454 -702 482 259 90 15 chr3 102261501 102261702 -115775456 - L1M4 LINE L1 -2110 4036 3821 1121 279 64 44 chr3 102261720 102262533 -115774625 - L1M4 LINE L1 -2404 3742 2914 1291 212 77 37 chr3 102262538 102262915 -115774243 - L1MB8 LINE L1 0 6178 5787 1452 264 15 45 chr3 102262915 102263393 -115773765 + MLT1D LTR MaLR 1 467 0 1889 234 16 31 chr3 102263393 102263980 -115773178 - L1MB8 LINE L1 -399 5785 5208 2172 143 18 0 chr3 102264686 102265028 -115772130 - THE1C LTR MaLR 0 375 28 888 92 14 14 chr3 102265135 102265277 -115771881 - THE1C-int LTR MaLR 0 1580 1439 205 245 19 0 chr3 102265718 102265771 -115771387 + (CA)n Simple_repeat Simple_repeat 2 55 0 26 0 0 0 chr3 102265798 102265824 -115771334 + AT_rich Low_complexity Low_complexity 1 26 0 1680 171 0 0 chr3 102265886 102266160 -115770998 - AluSx SINE Alu -38 274 1 24 0 0 0 chr3 102266940 102266964 -115770194 + AT_rich Low_complexity Low_complexity 1 24 0 1516 203 21 0 chr3 102267081 102267371 -115769787 + AluJb SINE Alu 1 296 -16 496 80 0 0 chr3 102267546 102267621 -115769537 - L1PA7 LINE L1 -1062 5084 5010 6733 72 12 0 chr3 102267621 102268657 -115768501 + L1PA7 LINE L1 5106 6152 -2 1667 174 28 3 chr3 102268677 102268965 -115768193 + AluJb SINE Alu 1 295 -17 29 28 0 0 chr3 102268971 102269007 -115768151 + AT_rich Low_complexity Low_complexity 1 36 0 1531 193 23 20 chr3 102269010 102269381 -115767777 - L1ME LINE L1 -578 5588 5216 1062 199 166 40 chr3 102269678 102269980 -115767178 + MSTA LTR MaLR 1 340 -88 553 129 12 0 chr3 102270084 102270169 -115766989 + MSTA LTR MaLR 290 375 0 8771 167 16 32 chr3 102270171 102271766 -115765392 + MSTA-int LTR MaLR 3 1572 -8 1986 147 131 16 chr3 102271776 102272158 -115765000 + MSTA LTR MaLR 3 428 0 942 225 118 43 chr3 102272376 102272749 -115764409 - MER57A LTR ERV1 0 403 3 276 100 0 0 chr3 102272897 102272937 -115764221 + (TG)n Simple_repeat Simple_repeat 2 41 0 343 250 14 21 chr3 102273007 102273151 -115764007 - L1ME LINE L1 -1033 5113 4971 212 236 91 45 chr3 102274837 102274947 -115762211 - MIR SINE MIR -12 250 136 365 368 74 15 chr3 102276776 102277045 -115760113 + HAL1 LINE L1 5 289 -2218 236 343 55 7 chr3 102277132 102277278 -115759880 + HAL1 LINE L1 423 575 -1932 319 300 108 54 chr3 102277877 102278247 -115758911 - L1ME LINE L1 -3066 3080 2691 220 227 0 40 chr3 102278353 102278428 -115758730 + GA-rich Low_complexity Low_complexity 2 73 0 421 343 124 0 chr3 102278505 102278683 -115758475 + MIR SINE MIR 53 252 -10 21 0 0 0 chr3 102278774 102278795 -115758363 + AT_rich Low_complexity Low_complexity 1 21 0 859 257 84 15 chr3 102278796 102279057 -115758101 - MLT1C LTR MaLR -2 465 187 2726 153 28 74 chr3 102279058 102279638 -115757520 + MLT2B3 LTR ERVL 2 554 0 524 148 93 9 chr3 102279648 102279756 -115757402 - MLT1C LTR MaLR -286 181 65 895 197 28 62 chr3 102279992 102280281 -115756877 + L1MC3 LINE L1 6802 7080 -705 635 227 119 16 chr3 102280269 102280463 -115756695 + L1MC3 LINE L1 7569 7782 -3 * 260 231 67 77 chr3 102283061 102283165 -115753993 + MIR SINE MIR 152 254 -8 27 0 0 0 chr3 102284211 102284238 -115752920 + AT_rich Low_complexity Low_complexity 1 27 0 185 308 125 0 chr3 102284704 102284808 -115752350 - MIR SINE MIR -64 198 82 21 82 0 0 chr3 102284907 102284956 -115752202 + AT_rich Low_complexity Low_complexity 1 49 0 272 253 0 44 chr3 102284988 102285079 -115752079 + (CATATA)n Simple_repeat Simple_repeat 4 90 0 359 335 157 5 chr3 102285533 102285730 -115751428 + MIR SINE MIR 6 232 -30 2668 192 46 5 chr3 102286198 102286766 -115750392 - L1MC2 LINE L1 -442 5902 5312 595 206 8 0 chr3 102286763 102286894 -115750264 - L1MC3 LINE L1 -748 7037 6906 * 1642 277 75 31 chr3 102286923 102287680 -115749478 + L1ME1 LINE L1 4273 4995 -1171 1854 123 53 20 chr3 102287680 102287982 -115749176 + AluSx SINE Alu 1 312 0 1642 277 75 31 chr3 102287982 102288623 -115748535 + L1ME1 LINE L1 4995 5728 -438 454 240 54 87 chr3 102288720 102288962 -115748196 - L1ME1 LINE L1 -172 5994 5761 * 489 286 173 38 chr3 102288957 102289193 -115747965 + L1M4 LINE L1 2975 3178 -2968 3133 42 3 0 chr3 102289193 102289578 -115747580 - L1PA5 LINE L1 -8 6146 5761 489 286 173 38 chr3 102289578 102290156 -115747002 + L1M4 LINE L1 3178 3899 -2247 354 240 104 32 chr3 102290156 102290310 -115746848 + L1ME1 LINE L1 5933 6097 -69 * 379 169 212 0 chr3 102290245 102290363 -115746795 + L1MA10 LINE L1 6192 6334 0 358 263 45 22 chr3 102290358 102290537 -115746621 + L1M4 LINE L1 5175 5357 -789 * 448 315 151 33 chr3 102290605 102290910 -115746248 + MLT1G1 LTR MaLR 253 593 -2 310 250 46 37 chr3 102290925 102291033 -115746125 + MLT1G1 LTR MaLR 271 379 -216 443 193 44 18 chr3 102291343 102291457 -115745701 + L1ME LINE L1 1553 1669 -4757 * 480 264 35 13 chr3 102291449 102291555 -115745603 + L1ME LINE L1 2057 2132 -4294 2541 232 10 69 chr3 102291555 102292322 -115744836 - MER72 LTR ERV1 0 722 1 480 264 35 13 chr3 102292322 102292425 -115744733 + L1ME LINE L1 2132 2231 -4195 314 61 20 0 chr3 102292426 102292475 -115744683 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 904 245 83 30 chr3 102292475 102292903 -115744255 + L1ME LINE L1 2336 2755 -3671 3952 190 30 46 chr3 102294549 102295847 -115741311 - L1P4 LINE L1 -589 5577 4317 2139 114 0 3 chr3 102295847 102296144 -115741014 - AluSq SINE Alu -17 296 1 3952 190 30 46 chr3 102296144 102296173 -115740985 - L1P4 LINE L1 -1849 4317 4289 23 54 0 0 chr3 102296660 102296697 -115740461 + AT_rich Low_complexity Low_complexity 1 37 0 258 148 0 0 chr3 102297606 102297660 -115739498 + (CA)n Simple_repeat Simple_repeat 2 55 0 220 170 21 21 chr3 102297760 102297807 -115739351 + (TATATG)n Simple_repeat Simple_repeat 3 49 0 2065 205 49 41 chr3 102298537 102299018 -115738140 - MER92B LTR ERV1 -77 559 72 3473 149 76 18 chr3 102299018 102299640 -115737518 + PABL_A LTR ERV1 3 660 0 2065 205 49 41 chr3 102299640 102299713 -115737445 - MER92B LTR ERV1 -564 72 1 411 319 126 47 chr3 102299721 102300214 -115736944 + L2 LINE L2 2335 2866 -448 1260 256 64 36 chr3 102300727 102301249 -115735909 + LTR27 LTR ERV1 2 1258 -141 3030 174 9 28 chr3 102302358 102302997 -115734161 - L1MA7 LINE L1 -31 6260 5634 554 260 8 0 chr3 102303026 102303153 -115734005 + L1ME3 LINE L1 6000 6127 -35 672 254 127 3 chr3 102303738 102304037 -115733121 + LTR37A LTR ERV1 78 413 -13 21 0 0 0 chr3 102304249 102304270 -115732888 + AT_rich Low_complexity Low_complexity 1 21 0 2308 94 0 0 chr3 102304354 102304651 -115732507 - AluSq SINE Alu -13 300 4 232 259 76 108 chr3 102304840 102305689 -115731469 + L1ME LINE L1 4142 4958 -1468 2207 104 3 3 chr3 102305689 102305988 -115731170 - AluSx SINE Alu -13 299 1 232 259 76 108 chr3 102305988 102306113 -115731045 + L1ME LINE L1 4958 5085 -1341 382 275 32 87 chr3 102306280 102306498 -115730660 + L1ME LINE L1 5741 5946 -504 5230 147 96 43 chr3 102306535 102306679 -115730479 - Tigger3(Golem) DNA MER2_type 0 3029 2894 2047 116 51 31 chr3 102306679 102307033 -115730125 + THE1B LTR MaLR 1 361 -3 5230 147 96 43 chr3 102307033 102307096 -115730062 - Tigger3(Golem) DNA MER2_type -135 2894 2836 1522 200 44 4 chr3 102307096 102307371 -115729787 + AluJo SINE Alu 1 286 -26 5230 147 96 43 chr3 102307371 102307993 -115729165 - Tigger3(Golem) DNA MER2_type -193 2836 2123 2865 130 26 0 chr3 102307993 102308453 -115728705 + L1PA14 LINE L1 5685 6156 -5 5230 147 96 43 chr3 102308453 102308734 -115728424 - Tigger3(Golem) DNA MER2_type -906 2123 1858 237 327 0 0 chr3 102308732 102308784 -115728374 - Tigger3(Golem) DNA MER2_type -2977 52 1 * 238 301 182 40 chr3 102308793 102308969 -115728189 - MIR SINE MIR -14 248 48 23 54 0 0 chr3 102309142 102309179 -115727979 + AT_rich Low_complexity Low_complexity 1 37 0 31 44 0 0 chr3 102309632 102309677 -115727481 + AT_rich Low_complexity Low_complexity 1 45 0 2385 72 0 3 chr3 102309833 102310139 -115727019 + AluY SINE Alu 1 305 -6 281 293 73 16 chr3 102310323 102310446 -115726712 + MIR SINE MIR 101 230 -32 333 221 0 0 chr3 102310626 102310730 -115726428 + L1MA7 LINE L1 6178 6281 -10 27 42 0 56 chr3 102310797 102310868 -115726290 + AT_rich Low_complexity Low_complexity 1 67 0 23 33 0 0 chr3 102311795 102311825 -115725333 + AT_rich Low_complexity Low_complexity 1 30 0 1013 154 0 12 chr3 102312286 102312455 -115724703 - AluSg/x SINE Alu -12 300 134 743 230 122 31 chr3 102312884 102313171 -115723987 + L1MCa LINE L1 779 1091 -5335 23 0 0 0 chr3 102313342 102313365 -115723793 + AT_rich Low_complexity Low_complexity 1 23 0 620 229 0 49 chr3 102313848 102313992 -115723166 + FAM SINE Alu 21 157 -28 180 0 0 0 chr3 102313995 102314015 -115723143 + (TAA)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr3 102314395 102314416 -115722742 + AT_rich Low_complexity Low_complexity 1 21 0 11968 121 17 48 chr3 102315219 102317858 -115719300 + L1PA7 LINE L1 8 2662 -3799 1221 123 19 33 chr3 102317860 102318072 -115719086 + AluSg/x SINE Alu 89 297 -15 2877 114 7 0 chr3 102318072 102318510 -115718648 + L1PA7 LINE L1 2669 3109 -3352 14372 104 18 8 chr3 102318510 102321427 -115715731 + L1PA7 LINE L1 3536 6467 -2 224 59 29 0 chr3 102321515 102321549 -115715609 + (TG)n Simple_repeat Simple_repeat 2 36 0 236 298 71 7 chr3 102321737 102321878 -115715280 - L1ME LINE L1 -667 5499 5350 355 307 96 63 chr3 102321928 102322482 -115714676 - L1ME LINE L1 -839 5307 4736 219 167 0 50 chr3 102322516 102322576 -115714582 + T-rich Low_complexity Low_complexity 5 61 0 273 265 114 37 chr3 102323620 102323997 -115713161 + L1MEd LINE L1 718 1123 -4996 334 182 0 0 chr3 102324099 102324176 -115712982 + L1M4 LINE L1 5157 5233 -913 295 340 29 10 chr3 102325107 102325210 -115711948 + L2 LINE L2 3208 3312 -1 2067 272 18 0 chr3 102325359 102325866 -115711292 - LTR53 LTR ERVL -3 516 1 393 78 0 223 chr3 102326151 102326254 -115710904 - MADE1 DNA Mariner 0 80 1 4615 165 28 36 chr3 102326526 102327466 -115709692 + L1PB4 LINE L1 5221 6154 -2 21 71 0 0 chr3 102327925 102327967 -115709191 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr3 102328509 102328531 -115708627 + AT_rich Low_complexity Low_complexity 1 22 0 293 385 87 22 chr3 102329383 102329614 -115707544 + L2 LINE L2 236 481 -2833 696 291 17 0 chr3 102329994 102330166 -115706992 + MIR SINE MIR 80 254 -8 2318 240 38 74 chr3 102330350 102331272 -115705886 + L1MB8 LINE L1 3763 4651 -1495 610 289 0 0 chr3 102331274 102331450 -115705708 + FRAM SINE Alu 1 40 0 2641 230 56 30 chr3 102331466 102332290 -115704868 + L1MB8 LINE L1 5208 6049 -129 212 349 0 0 chr3 102332488 102332554 -115704604 + GA-rich Low_complexity Low_complexity 2 67 0 269 232 161 9 chr3 102332692 102332804 -115704354 + L2 LINE L2 3185 3313 0 511 283 90 0 chr3 102333117 102333340 -115703818 - MLT1F1 LTR MaLR 0 567 325 21 0 0 0 chr3 102334377 102334398 -115702760 + AT_rich Low_complexity Low_complexity 1 21 0 222 191 0 0 chr3 102334998 102335040 -115702118 + (CA)n Simple_repeat Simple_repeat 1 42 0 3426 157 36 2 chr3 102336118 102336722 -115700436 - L1MA4 LINE L1 -289 6011 5387 274 232 0 0 chr3 102336722 102336778 -115700380 + L1M3f LINE L1 553 608 -4720 23 54 0 0 chr3 102337668 102337705 -115699453 + AT_rich Low_complexity Low_complexity 1 37 0 252 281 62 0 chr3 102338104 102338232 -115698926 + L1ME LINE L1 5759 5894 -227 803 240 43 66 chr3 102338401 102338820 -115698338 + MLT1A1 LTR MaLR 2 365 0 708 177 0 43 chr3 102339393 102339534 -115697624 - L1PB4 LINE L1 -1 6155 6021 295 181 43 112 chr3 102340492 102340527 -115696631 + LTR52 LTR ERVL 13 49 -372 1703 158 10 3 chr3 102340527 102340818 -115696340 - AluJb SINE Alu -17 295 3 295 181 43 112 chr3 102340818 102340898 -115696260 + LTR52 LTR ERVL 49 120 -301 21 0 0 0 chr3 102341790 102341811 -115695347 + AT_rich Low_complexity Low_complexity 1 21 0 2966 175 72 47 chr3 102341811 102342518 -115694640 - L1MB1 LINE L1 -1 6167 5443 6278 261 72 28 chr3 102342522 102344618 -115692540 - L1MB1 LINE L1 -1063 5083 2897 * 6747 40 0 1 chr3 102344610 102345427 -115691731 - L1PA4 LINE L1 -2 6153 5338 840 257 16 36 chr3 102345425 102345729 -115691429 - L1MB1 LINE L1 -3225 2921 2624 * 240 213 16 33 chr3 102345729 102345790 -115691368 - Tigger5 DNA MER2_type 0 2323 2264 311 186 0 0 chr3 102345854 102345913 -115691245 - Tigger5 DNA MER2_type 0 2323 2265 1190 274 18 20 chr3 102345975 102346376 -115690782 - L1MB1 LINE L1 -3548 2598 2199 366 116 14 0 chr3 102346426 102346495 -115690663 - L1PA16 LINE L1 0 6166 6097 3505 173 15 19 chr3 102346519 102347047 -115690111 - L1PA16 LINE L1 -144 6022 5493 233 29 29 0 chr3 102347047 102347081 -115690077 + (TG)n Simple_repeat Simple_repeat 2 36 0 3505 173 15 19 chr3 102347081 102347242 -115689916 - L1PA16 LINE L1 -673 5493 5331 1876 155 7 0 chr3 102347242 102347532 -115689626 - AluSx SINE Alu -20 292 1 3505 173 15 19 chr3 102347532 102347554 -115689604 - L1PA16 LINE L1 -835 5331 5310 2869 212 5 0 chr3 102347563 102348163 -115688995 + L1 LINE L1 4428 5030 -1116 43166 46 1 2 chr3 102348168 102353665 -115683493 + L1P1 LINE L1 8 5497 -658 2378 62 0 0 chr3 102354065 102354357 -115682801 - AluY SINE Alu -19 292 1 2160 288 43 37 chr3 102354671 102355530 -115681628 + L1MCb LINE L1 4 867 -5178 862 262 46 46 chr3 102355567 102355822 -115681336 + L1MCb LINE L1 953 1207 -5357 1894 155 10 3 chr3 102355822 102356126 -115681032 + AluSq SINE Alu 1 306 -7 2519 58 0 3 chr3 102356126 102356438 -115680720 + AluY SINE Alu 1 311 0 862 262 46 46 chr3 102356438 102356613 -115680545 + L1MCb LINE L1 1205 1384 -5180 265 274 64 39 chr3 102356620 102356824 -115680334 + L1MCb LINE L1 1536 1744 -4820 213 39 0 0 chr3 102356870 102356896 -115680262 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 888 256 147 20 chr3 102356897 102357763 -115679395 + L1MCb LINE L1 2000 2920 -3644 683 286 128 28 chr3 102357780 102358241 -115678917 + L1MCb LINE L1 4160 4666 -1898 2333 197 29 2 chr3 102358256 102358734 -115678424 + L1MC1 LINE L1 5652 6142 -191 1349 183 11 7 chr3 102358734 102359008 -115678150 + L1MC3 LINE L1 7447 7721 -64 451 243 108 106 chr3 102359028 102359407 -115677751 - MLT1J LTR MaLR -74 437 58 1944 135 30 3 chr3 102359407 102359710 -115677448 + AluSp SINE Alu 1 311 -2 225 255 10 41 chr3 102360433 102360531 -115676627 + (TATATG)n Simple_repeat Simple_repeat 2 96 0 242 370 44 0 chr3 102360736 102360854 -115676304 - MIR SINE MIR -80 128 1 182 143 20 0 chr3 102361261 102361310 -115675848 + (TA)n Simple_repeat Simple_repeat 2 51 0 1092 237 89 33 chr3 102361379 102361683 -115675475 - MLT2D LTR ERVL -93 321 1 405 320 14 7 chr3 102361786 102361933 -115675225 - LTR16C LTR ERVL -37 454 307 23 0 0 0 chr3 102362016 102362039 -115675119 + AT_rich Low_complexity Low_complexity 1 23 0 1575 234 34 11 chr3 102363277 102363718 -115673440 + L1MB8 LINE L1 5258 5708 -476 * 3847 198 23 6 chr3 102363717 102364503 -115672655 + L1PA10 LINE L1 953 1721 -4740 3146 169 3 9 chr3 102364511 102365090 -115672068 + L1PA10 LINE L1 2364 2939 -3522 14321 186 13 6 chr3 102365190 102366964 -115670194 + L1PA10 LINE L1 2934 4693 -1790 2216 117 0 3 chr3 102366964 102367263 -115669895 + AluSq SINE Alu 1 298 -15 14321 186 13 6 chr3 102367263 102369044 -115668114 + L1PA10 LINE L1 4693 6473 -10 300 242 0 145 chr3 102369051 102369175 -115667983 - L1MCa LINE L1 -5198 1228 1123 421 255 55 35 chr3 102369744 102369777 -115667381 + L1MC4a LINE L1 6450 6481 -1327 294 87 0 0 chr3 102369777 102369823 -115667335 + (TG)n Simple_repeat Simple_repeat 2 47 0 421 255 55 35 chr3 102369823 102369934 -115667224 + L1MC4a LINE L1 6481 6597 -1211 1472 229 21 9 chr3 102369956 102370284 -115666874 + MLT1A1 LTR MaLR 26 357 -8 1848 233 89 27 chr3 102370292 102370923 -115666235 + L1MC4 LINE L1 6625 7294 -748 839 268 21 24 chr3 102370916 102371203 -115665955 + L1MB8 LINE L1 5891 6176 -2 * 1318 285 60 27 chr3 102371183 102371779 -115665379 + L1MC4 LINE L1 7285 7900 -142 39 0 0 0 chr3 102373190 102373229 -115663929 + AT_rich Low_complexity Low_complexity 1 39 0 357 374 52 11 chr3 102373502 102373676 -115663482 + MIR3 SINE MIR 5 185 -23 321 26 0 0 chr3 102374351 102374389 -115662769 + (TAA)n Simple_repeat Simple_repeat 3 40 0 929 289 45 48 chr3 102374824 102375243 -115661915 + L2 LINE L2 2500 2917 -397 486 148 176 19 chr3 102375458 102375566 -115661592 + MER63 DNA MER1_type 2 752 -84 363 219 85 0 chr3 102375659 102375741 -115661417 + L2 LINE L2 3221 3309 -4 2253 49 3 18 chr3 102376626 102376938 -115660220 + AluY SINE Alu 1 308 0 955 240 65 0 chr3 102376938 102377184 -115659974 + L1P LINE L1 5034 5295 -851 853 251 70 74 chr3 102379320 102379766 -115657392 + LTR37B LTR ERV1 15 458 -10 1529 264 53 66 chr3 102379876 102380463 -115656695 - MLT1E1 LTR MaLR -3 651 73 213 65 0 0 chr3 102381047 102381078 -115656080 + (TG)n Simple_repeat Simple_repeat 2 32 0 294 224 113 64 chr3 102381083 102381331 -115655827 - L1ME1 LINE L1 -67 6099 5801 1807 212 8 11 chr3 102381334 102381692 -115655466 + MLT1A1 LTR MaLR 9 365 0 1517 271 75 11 chr3 102381692 102382587 -115654571 - L1ME1 LINE L1 -360 5806 4814 1752 253 76 16 chr3 102382587 102383195 -115653963 - LTR48B LTR ERV1 0 644 1 1517 271 75 11 chr3 102383195 102383316 -115653842 - L1ME1 LINE L1 -1352 4814 4702 192 77 0 0 chr3 102383379 102383405 -115653753 + (T)n Simple_repeat Simple_repeat 1 26 0 285 294 39 26 chr3 102383467 102383620 -115653538 - L1ME1 LINE L1 -1431 4715 4561 478 250 114 11 chr3 102584999 102585183 -115451975 - MLT1K LTR MaLR -10 578 376 231 303 30 76 chr3 102585214 102585346 -115451812 + L2 LINE L2 1104 1229 -2085 1093 157 30 5 chr3 102585620 102585817 -115451341 - Tigger2 DNA MER2_type -248 2470 2269 392 152 0 15 chr3 102585807 102585873 -115451285 - Tigger2 DNA MER2_type -2653 65 1 * 10582 160 53 36 chr3 102585873 102588173 -115448985 - L1M4c LINE L1 -4027 2357 19 23 33 0 0 chr3 102588215 102588245 -115448913 + AT_rich Low_complexity Low_complexity 1 30 0 218 387 0 36 chr3 102588419 102588556 -115448602 - L2 LINE L2 -271 3001 2870 800 231 11 5 chr3 102588557 102588743 -115448415 + MER5A DNA MER1_type 3 189 0 432 181 156 62 chr3 102589706 102589866 -115447292 - L2 LINE L2 -2 3311 3137 745 313 64 19 chr3 102589891 102590265 -115446893 + LTR16A LTR ERVL 60 450 0 768 276 14 45 chr3 102590633 102590854 -115446304 + MIR SINE MIR 47 260 -2 926 295 28 4 chr3 102591362 102591616 -115445542 + MIR SINE MIR 1 260 -2 24 0 0 0 chr3 102591841 102591865 -115445293 + AT_rich Low_complexity Low_complexity 1 24 0 1096 31 0 0 chr3 102592429 102592559 -115444599 - L1PA5 LINE L1 -8 6146 6017 205 336 123 20 chr3 102594476 102594622 -115442536 + L2 LINE L2 3110 3270 -2 22 94 0 0 chr3 102594650 102594714 -115442444 + AT_rich Low_complexity Low_complexity 1 64 0 1064 29 35 24 chr3 102598636 102598806 -115438352 + (TTTC)n Simple_repeat Simple_repeat 1 172 0 2113 117 0 3 chr3 102598806 102599088 -115438070 - AluSq SINE Alu -32 281 1 738 224 81 43 chr3 102599278 102599436 -115437722 + MIR SINE MIR 30 199 -63 1656 183 33 48 chr3 102599436 102599829 -115437329 - MLT1B LTR MaLR -3 387 1 738 224 81 43 chr3 102599829 102599880 -115437278 + MIR SINE MIR 199 247 -15 2034 223 78 21 chr3 102601517 102601729 -115435429 - L1MD2 LINE L1 -3 6356 6158 195 100 0 0 chr3 102601729 102601759 -115435399 + (TG)n Simple_repeat Simple_repeat 1 30 0 2034 223 78 21 chr3 102601759 102602106 -115435052 - L1MD2 LINE L1 -201 6158 5766 328 296 23 0 chr3 102602136 102602224 -115434934 - L1MC4 LINE L1 -1339 6703 6614 310 269 0 43 chr3 102602143 102602236 -115434922 + L1MC4 LINE L1 6615 6703 -1339 * 195 100 0 0 chr3 102602236 102602266 -115434892 + (TATATG)n Simple_repeat Simple_repeat 2 31 0 231 225 50 0 chr3 102602266 102602346 -115434812 - L1MC4 LINE L1 -1339 6703 6620 * 2544 197 24 14 chr3 102602333 102603060 -115434098 - L1MD2 LINE L1 -584 5775 5040 8283 36 0 0 chr3 102603071 102604828 -115432330 - L1PA4 LINE L1 -8 6147 4392 15898 35 2 7 chr3 102604828 102606801 -115430357 + L1P LINE L1 2322 4284 -1862 3808 295 38 36 chr3 102606797 102607680 -115429478 - L1MD2 LINE L1 -1090 5056 4167 * 1688 175 3 19 chr3 102607680 102607995 -115429163 - AluJo SINE Alu -2 310 1 3808 295 38 36 chr3 102607995 102608646 -115428512 - L1MD2 LINE L1 -1979 4167 3519 896 221 0 11 chr3 102608682 102608863 -115428295 - FRAM SINE Alu 0 176 1 301 242 54 81 chr3 102608923 102609072 -115428086 - L1MD2 LINE L1 -2845 3301 3157 489 265 0 7 chr3 102609072 102609208 -115427950 - L1MD2 LINE L1 -3311 2835 2701 410 162 0 0 chr3 102609216 102609284 -115427874 - MLT1A2 LTR MaLR -4 370 303 797 217 94 102 chr3 102609287 102609660 -115427498 + MLT1A2 LTR MaLR 5 374 0 806 206 34 17 chr3 102609660 102609835 -115427323 - MLT1K-int LTR MaLR -1490 245 68 234 204 0 0 chr3 102609837 102609881 -115427277 - MLT1B LTR MaLR -346 44 1 3735 142 22 68 chr3 102609886 102610607 -115426551 - LTR8 LTR ERV1 -3 688 1 411 296 131 28 chr3 102612095 102612271 -115424887 - L2 LINE L2 -875 2439 2246 240 35 0 0 chr3 102612298 102612327 -115424831 + (TG)n Simple_repeat Simple_repeat 2 30 0 305 322 86 68 chr3 102612983 102613411 -115423747 - MLT1K LTR MaLR -2 586 151 338 315 185 11 chr3 102613723 102613901 -115423257 + MIR SINE MIR 18 226 -36 516 301 163 42 chr3 102614588 102614785 -115422373 - MLT1L LTR MaLR -117 498 326 1408 200 54 64 chr3 102614785 102615175 -115421983 - MLT1B LTR MaLR 0 390 5 516 301 163 42 chr3 102615175 102615406 -115421752 - MLT1L LTR MaLR -289 326 18 2183 83 0 0 chr3 102615569 102615846 -115421312 - AluSc SINE Alu -8 301 25 1011 236 64 4 chr3 102616478 102616728 -115420430 - L1ME1 LINE L1 -8 6158 5894 1203 202 66 58 chr3 102617121 102617278 -115419880 + MLT1A1 LTR MaLR 1 155 -210 231 36 0 0 chr3 102617278 102617306 -115419852 + (TC)n Simple_repeat Simple_repeat 2 29 0 1203 202 66 58 chr3 102617306 102617510 -115419648 + MLT1A1 LTR MaLR 155 365 0 3983 242 58 52 chr3 102617514 102618871 -115418287 + MLT1A1-int LTR MaLR 5 1370 -1 1243 175 15 106 chr3 102618872 102619203 -115417955 + MLT1A1 LTR MaLR 1 301 -64 700 246 21 12 chr3 102619203 102619413 -115417745 - L1P4 LINE L1 -581 5584 5376 198 162 0 59 chr3 102619453 102619521 -115417637 + GA-rich Low_complexity Low_complexity 4 67 0 704 291 97 42 chr3 102621037 102621346 -115415812 - MLT1J LTR MaLR -108 403 78 22 0 0 0 chr3 102621789 102621811 -115415347 + AT_rich Low_complexity Low_complexity 1 22 0 298 297 0 0 chr3 102621950 102622014 -115415144 + L2 LINE L2 3160 3223 -49 23 0 0 0 chr3 102623261 102623284 -115413874 + AT_rich Low_complexity Low_complexity 1 23 0 273 253 138 0 chr3 102624197 102624284 -115412874 + MLT1L LTR MaLR 1 99 -516 467 325 22 67 chr3 102624517 102624874 -115412284 + MLT1L LTR MaLR 146 486 -129 402 297 83 53 chr3 102625167 102625433 -115411725 - L3 LINE CR1 -25 1552 1279 326 257 38 9 chr3 102626642 102626747 -115410411 + L1ME LINE L1 900 1007 -5063 18499 158 36 56 chr3 102626812 102630757 -115406401 + L1M1 LINE L1 19 3887 -3678 2914 128 29 7 chr3 102630760 102631206 -115405952 + MER1A DNA MER1_type 74 529 0 2372 249 46 20 chr3 102631206 102631944 -115405214 - L1M4 LINE L1 -3161 2985 2221 1831 166 17 0 chr3 102631944 102632245 -115404913 - AluSx SINE Alu -6 306 1 2372 249 46 20 chr3 102632245 102632349 -115404809 - L1M4 LINE L1 -3925 2221 2121 1401 157 21 0 chr3 102632351 102632587 -115404571 - Tigger2 DNA MER2_type -1 2717 2477 2348 143 40 24 chr3 102633681 102634101 -115403057 - MSTC LTR MaLR -1 427 1 357 342 20 34 chr3 102634205 102634354 -115402804 - L2 LINE L2 -1 3312 3166 1967 86 35 31 chr3 102636043 102636333 -115400825 - AluSc SINE Alu -18 291 1 252 313 0 0 chr3 102636947 102637011 -115400147 - L2 LINE L2 0 3313 3250 827 284 41 7 chr3 102637547 102637792 -115399366 - MIR SINE MIR -12 250 1 238 305 60 98 chr3 102637999 102638347 -115398811 + LTR33 LTR ERVL 159 493 -28 792 337 151 24 chr3 102639395 102640211 -115396947 - L2 LINE L2 0 3313 2379 530 320 4 47 chr3 102641352 102641586 -115395572 - MIR SINE MIR -6 256 33 6741 113 32 15 chr3 102641926 102642966 -115394192 + MER11C LTR ERVK 1 1057 -14 448 320 61 48 chr3 102642987 102643299 -115393859 + L1ME3A LINE L1 5543 5858 -312 246 346 66 11 chr3 102645203 102645385 -115391773 - L2 LINE L2 -701 2613 2422 587 258 38 0 chr3 102647030 102647162 -115389996 + L2 LINE L2 3136 3272 0 559 215 203 39 chr3 102647486 102647818 -115389340 - MLT1C LTR MaLR 0 467 78 208 368 132 0 chr3 102647852 102647920 -115389238 - L2 LINE L2 -59 3213 3137 262 260 279 0 chr3 102648579 102648683 -115388475 + MIR SINE MIR 52 184 -78 208 268 0 0 chr3 102650161 102650217 -115386941 + MIR SINE MIR 82 137 -125 26 30 0 0 chr3 102651412 102651445 -115385713 + AT_rich Low_complexity Low_complexity 1 33 0 324 122 27 27 chr3 102653099 102653173 -115383985 + GA-rich Low_complexity Low_complexity 4 77 0 334 47 0 0 chr3 102653671 102653714 -115383444 - L1PA5 LINE L1 -3 6151 6109 31 58 0 0 chr3 102655836 102655888 -115381270 + AT_rich Low_complexity Low_complexity 1 52 0 7173 60 101 5 chr3 102655899 102656849 -115380309 - SVA Other Other -1 1385 345 224 29 0 29 chr3 102657341 102657375 -115379783 + (CCCCG)n Simple_repeat Simple_repeat 2 34 0 204 132 26 0 chr3 102658348 102658386 -115378772 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 721 181 0 22 chr3 102658646 102658784 -115378374 + FLAM_A SINE Alu 6 140 -2 296 290 96 63 chr3 102660324 102660690 -115376468 - MLT1J LTR MaLR -63 448 71 757 270 0 6 chr3 102660915 102661093 -115376065 - MER45A DNA AcHobo -1 177 1 909 236 239 6 chr3 102662076 102662423 -115374735 - MSTC LTR MaLR 0 428 1 307 355 23 23 chr3 102664632 102664804 -115372354 + MIR SINE MIR 20 191 -71 2311 80 0 3 chr3 102665073 102665375 -115371783 + AluY SINE Alu 1 301 -10 30 45 0 0 chr3 102665745 102665789 -115371369 + AT_rich Low_complexity Low_complexity 1 44 0 1735 250 103 13 chr3 102666375 102666919 -115370239 - MLT1E LTR MaLR 0 593 1 3168 147 39 34 chr3 102666937 102667501 -115369657 - LTR69 LTR ERVL -5 583 17 834 237 79 9 chr3 102667504 102667732 -115369426 - MLT1H LTR MaLR -305 244 1 1407 156 31 17 chr3 102667930 102668219 -115368939 + AluSx SINE Alu 1 293 -19 1023 184 15 100 chr3 102668392 102668663 -115368495 - L1PA16 LINE L1 -7 6159 5912 512 94 188 0 chr3 102668650 102668735 -115368423 + L1PA16 LINE L1 5812 5912 -254 * 299 313 36 0 chr3 102668874 102668957 -115368201 - L2 LINE L2 -13 3259 3174 818 268 57 22 chr3 102669630 102669947 -115367211 + L1ME1 LINE L1 5788 6115 -51 318 219 0 0 chr3 102669965 102670047 -115367111 + L1PB4 LINE L1 6073 6154 -2 2120 106 62 18 chr3 102671014 102671354 -115365804 + THE1A LTR MaLR 1 355 0 11116 104 12 1 chr3 102671354 102672916 -115364242 + THE1A-int LTR MaLR 1 1580 0 1611 146 115 9 chr3 102672916 102673237 -115363921 + THE1A LTR MaLR 1 355 0 2234 126 0 0 chr3 102673375 102673684 -115363474 + AluSg SINE Alu 1 309 -1 577 292 73 26 chr3 102675199 102675432 -115361726 - MIR SINE MIR -15 247 4 349 313 38 25 chr3 102677598 102677758 -115359400 - MER103 DNA DNA -2 164 3 636 325 43 20 chr3 102678064 102678319 -115358839 - MIR SINE MIR 0 262 2 268 178 0 0 chr3 102678677 102678722 -115358436 - MER103 DNA DNA -119 47 3 779 241 14 38 chr3 102678809 102679021 -115358137 + MER63A DNA MER1_type 1 207 -3 1783 166 118 40 chr3 102679518 102679915 -115357243 - MSTA LTR MaLR 0 428 1 8405 138 8 111 chr3 102679915 102681674 -115355484 - MSTA-int LTR MaLR 0 1580 3 1930 170 125 8 chr3 102681676 102682059 -115355099 - MSTA LTR MaLR 0 428 1 27 62 0 0 chr3 102683353 102683401 -115353757 + AT_rich Low_complexity Low_complexity 1 48 0 229 230 56 16 chr3 102684356 102684482 -115352676 + (TA)n Simple_repeat Simple_repeat 2 132 0 248 339 80 7 chr3 102685321 102685479 -115351679 + MIR SINE MIR 49 216 -46 2242 170 29 0 chr3 102687599 102688010 -115349148 - L1MA6 LINE L1 -256 6044 5622 * 2534 183 6 16 chr3 102688008 102688808 -115348350 + L1MA6 LINE L1 4825 5618 -682 606 258 73 0 chr3 102688808 102688986 -115348172 - MLT1D LTR MaLR -314 191 1 230 315 23 31 chr3 102689656 102689786 -115347372 + A-rich Low_complexity Low_complexity 4 132 0 443 352 84 15 chr3 102689800 102690073 -115347085 + L3 LINE CR1 1277 1568 -9 213 269 0 19 chr3 102690153 102690205 -115346953 + (CACG)n Simple_repeat Simple_repeat 1 51 0 21 36 0 0 chr3 102690691 102690719 -115346439 + AT_rich Low_complexity Low_complexity 1 28 0 6750 162 40 20 chr3 102692724 102695115 -115342043 - L1MA5 LINE L1 0 6300 3860 5646 209 37 0 chr3 102695189 102696489 -115340669 - L1MA5 LINE L1 -2598 3548 2201 234 227 45 64 chr3 102697000 102697110 -115340048 - L1MC4a LINE L1 -1300 6508 6401 24 96 0 0 chr3 102697139 102697212 -115339946 + AT_rich Low_complexity Low_complexity 1 73 0 2386 64 0 0 chr3 102697355 102697652 -115339506 - AluY SINE Alu -14 297 1 27 49 0 0 chr3 102697652 102697693 -115339465 + AT_rich Low_complexity Low_complexity 1 41 0 1470 244 81 21 chr3 102697831 102698315 -115338843 - L1MC4a LINE L1 -1904 5904 5392 21 36 0 0 chr3 102698438 102698466 -115338692 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr3 102699952 102699983 -115337175 + AT_rich Low_complexity Low_complexity 1 31 0 1343 238 58 16 chr3 102700119 102700497 -115336661 - MSTD LTR MaLR -2 394 1 252 0 0 0 chr3 102701254 102701282 -115335876 + (CA)n Simple_repeat Simple_repeat 2 29 0 266 65 0 22 chr3 102701370 102701416 -115335742 + (TG)n Simple_repeat Simple_repeat 2 46 0 771 191 43 12 chr3 102701762 102701924 -115335234 - MLT1A1 LTR MaLR 0 365 199 450 258 0 0 chr3 102702037 102702129 -115335029 - MLT1A1 LTR MaLR -303 125 34 353 65 0 0 chr3 102702129 102702175 -115334983 + Alu SINE Alu 1 46 -254 308 306 24 0 chr3 102702192 102702316 -115334842 + CT-rich Low_complexity Low_complexity 2 128 0 1797 175 22 30 chr3 102702367 102702733 -115334425 - MLT1A1 LTR MaLR -2 363 1 314 231 125 29 chr3 102703083 102703187 -115333971 + L2 LINE L2 3190 3303 -10 * 824 233 9 21 chr3 102703180 102703368 -115333790 - MIR SINE MIR -15 247 62 209 256 47 47 chr3 102703445 102703531 -115333627 + MIR SINE MIR 93 178 -84 22 0 0 0 chr3 102703827 102703849 -115333309 + AT_rich Low_complexity Low_complexity 1 22 0 1137 261 47 44 chr3 102705492 102705938 -115331220 - MER39 LTR ERV1 0 707 67 198 289 39 0 chr3 102706334 102706386 -115330772 + L3 LINE CR1 1519 1572 -5 198 71 0 0 chr3 102706854 102706882 -115330276 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 1032 206 35 123 chr3 102707093 102707603 -115329555 - MER4C LTR ERV1 0 465 1 23 86 0 0 chr3 102708073 102708131 -115329027 + AT_rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr3 102710235 102710256 -115326902 + AT_rich Low_complexity Low_complexity 1 21 0 234 336 66 0 chr3 102710332 102710454 -115326704 - L2 LINE L2 -291 2981 2852 204 118 29 0 chr3 102710512 102710546 -115326612 - L2 LINE L2 -7 3306 3272 189 394 80 15 chr3 102711094 102711231 -115325927 + L2 LINE L2 3125 3270 -2 233 324 95 8 chr3 102711710 102711963 -115325195 + L1MEd LINE L1 865 1139 -5233 28 29 0 0 chr3 102711983 102712018 -115325140 + AT_rich Low_complexity Low_complexity 1 35 0 316 259 52 9 chr3 102712427 102712543 -115324615 + L1MEd LINE L1 1606 1726 -4658 392 249 44 100 chr3 102712693 102712886 -115324272 + L1MEd LINE L1 3124 3326 -3056 1998 115 7 0 chr3 102712886 102713165 -115323993 + AluSp SINE Alu 1 281 -32 225 0 0 0 chr3 102713172 102713197 -115323961 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 2007 117 0 3 chr3 102713205 102713487 -115323671 + AluSx SINE Alu 1 281 -31 180 0 0 0 chr3 102713487 102713507 -115323651 + (CA)n Simple_repeat Simple_repeat 1 20 0 392 249 44 100 chr3 102713507 102713684 -115323474 + L1MEd LINE L1 3337 3490 -2892 1351 299 87 51 chr3 102714172 102716178 -115320980 + L1MEd LINE L1 3479 5557 -825 939 264 89 3 chr3 102716248 102716563 -115320595 + L1PA13 LINE L1 2417 2758 -3388 6984 217 25 6 chr3 102716564 102717842 -115319316 + L1PA13 LINE L1 3677 4929 -1234 2238 130 25 6 chr3 102717842 102718196 -115318962 - THE1B LTR MaLR -2 362 2 9674 117 47 14 chr3 102718197 102718386 -115318772 - THE1B-int LTR MaLR 0 1580 1399 2255 102 3 7 chr3 102718386 102718689 -115318469 + AluSq SINE Alu 1 302 -11 9674 117 47 14 chr3 102718689 102720029 -115317129 - THE1B-int LTR MaLR -181 1399 1 1963 153 40 8 chr3 102720029 102720382 -115316776 - THE1B LTR MaLR 0 364 1 6984 217 25 6 chr3 102720382 102721563 -115315595 + L1PA13 LINE L1 4928 6162 -1 2044 147 55 11 chr3 102721563 102721935 -115315223 + L1PA15 LINE L1 5769 6165 0 432 282 34 0 chr3 102722361 102722510 -115314648 - MER103 DNA DNA 0 166 13 682 356 10 10 chr3 102722641 102722950 -115314208 + LTR16B LTR ERVL 156 464 0 27 81 0 0 chr3 102723915 102723977 -115313181 + AT_rich Low_complexity Low_complexity 1 62 0 182 247 161 21 chr3 102726213 102726306 -115310852 - MIR SINE MIR -1 261 156 2073 150 13 29 chr3 102726447 102726828 -115310330 - THE1C LTR MaLR 0 375 1 339 344 0 0 chr3 102728047 102728137 -115309021 + MIR SINE MIR 4 93 -169 724 300 72 61 chr3 102728489 102729059 -115308099 - MLT1G LTR MaLR 0 590 15 1429 83 23 37 chr3 102730813 102731029 -115306129 - MER30 DNA MER1_type -17 213 1 273 244 26 0 chr3 102731029 102731107 -115306051 - L1MA9 LINE L1 -54 6258 6179 825 139 31 0 chr3 102731533 102731662 -115305496 - FLAM_C SINE Alu -10 133 1 21 36 0 0 chr3 102731664 102731692 -115305466 + AT_rich Low_complexity Low_complexity 1 28 0 238 316 0 51 chr3 102732416 102732514 -115304644 - L2 LINE L2 0 3272 3180 45 0 0 0 chr3 102734438 102734483 -115302675 + AT_rich Low_complexity Low_complexity 1 45 0 21 71 0 0 chr3 102734754 102734796 -115302362 + AT_rich Low_complexity Low_complexity 1 42 0 245 247 25 101 chr3 102735012 102735170 -115301988 + L1 LINE L1 3686 3831 -2315 361 295 101 10 chr3 102735515 102735722 -115301436 - L1M4 LINE L1 -1695 4451 4226 1795 125 59 4 chr3 102736163 102736435 -115300723 + AluSx SINE Alu 1 287 -25 180 0 0 0 chr3 102737220 102737240 -115299918 + (A)n Simple_repeat Simple_repeat 1 20 0 377 255 80 53 chr3 102737824 102738012 -115299146 + MIR SINE MIR 69 261 -1 32 67 0 0 chr3 102738046 102738106 -115299052 + AT_rich Low_complexity Low_complexity 1 60 0 202 214 0 129 chr3 102738353 102738423 -115298735 + L2 LINE L2 3212 3272 0 289 282 79 26 chr3 102739355 102739621 -115297537 + L1M4 LINE L1 2943 3222 -2924 26 30 0 0 chr3 102739625 102739658 -115297500 + AT_rich Low_complexity Low_complexity 1 33 0 330 349 13 26 chr3 102741148 102741300 -115295858 + L3 LINE CR1 1417 1566 -11 24 53 0 0 chr3 102743317 102743355 -115293803 + AT_rich Low_complexity Low_complexity 1 38 0 542 385 19 8 chr3 102743377 102743634 -115293524 - MIR SINE MIR 0 262 3 248 324 28 70 chr3 102744557 102744699 -115292459 - L2 LINE L2 0 3272 3137 235 382 28 17 chr3 102744913 102745091 -115292067 - L2 LINE L2 -418 2896 2717 255 262 0 0 chr3 102745095 102745156 -115292002 - MIR SINE MIR -27 235 175 181 345 23 11 chr3 102746369 102746456 -115290702 - MIR SINE MIR -9 253 166 21 89 0 0 chr3 102746875 102746931 -115290227 + AT_rich Low_complexity Low_complexity 1 56 0 21 36 0 0 chr3 102748297 102748325 -115288833 + AT_rich Low_complexity Low_complexity 1 28 0 440 378 25 0 chr3 102748904 102749100 -115288058 + L3 LINE CR1 1370 1570 -7 376 299 109 11 chr3 102749096 102749280 -115287878 - MIR SINE MIR -1 261 60 * 770 169 71 13 chr3 102750127 102750281 -115286877 - L1MA9 LINE L1 -151 6161 5999 185 254 36 18 chr3 102750307 102750362 -115286796 + L2 LINE L2 3213 3268 -4 23 78 0 0 chr3 102750440 102750491 -115286667 + AT_rich Low_complexity Low_complexity 1 51 0 24 32 0 0 chr3 102751534 102751565 -115285593 + AT_rich Low_complexity Low_complexity 1 31 0 2560 32 0 7 chr3 102751805 102752114 -115285044 + AluY SINE Alu 1 307 -4 212 167 21 0 chr3 102752561 102752609 -115284549 + (TA)n Simple_repeat Simple_repeat 2 50 0 312 279 0 0 chr3 102753200 102753322 -115283836 + (TG)n Simple_repeat Simple_repeat 1 122 0 1098 244 106 6 chr3 102753322 102753671 -115283487 - MLT1B LTR MaLR 0 390 7 243 311 39 29 chr3 102754517 102754620 -115282538 + MIR SINE MIR 93 196 -66 1338 276 78 60 chr3 102754633 102755285 -115281873 - L3 LINE CR1 -100 1477 814 341 193 28 50 chr3 102755295 102755476 -115281682 + (TA)n Simple_repeat Simple_repeat 1 177 0 186 393 49 0 chr3 102755594 102755716 -115281442 - L3 LINE CR1 -761 816 689 410 330 123 26 chr3 102756355 102756582 -115280576 - MIR SINE MIR 0 262 14 697 292 166 25 chr3 102756997 102757704 -115279454 + L2 LINE L2 2496 3309 -4 192 40 0 0 chr3 102758061 102758086 -115279072 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 189 121 0 0 chr3 102758367 102758400 -115278758 + (A)n Simple_repeat Simple_repeat 1 33 0 254 217 91 63 chr3 102758728 102758871 -115278287 - Charlie3 DNA MER1_type -2402 308 162 * 1475 145 5 9 chr3 102758748 102758969 -115278189 + MER1B DNA MER1_type 112 331 -8 4129 148 59 20 chr3 102759507 102760272 -115276886 - Tigger3(Golem) DNA MER2_type 0 3029 2235 2236 157 48 29 chr3 102760280 102760700 -115276458 - MSTA LTR MaLR 0 428 1 447 260 72 84 chr3 102761407 102761896 -115275262 + L1M4 LINE L1 2674 3156 -2990 2007 173 61 35 chr3 102761907 102762214 -115274944 - LTR47A LTR ERVL -8 444 123 2190 120 7 0 chr3 102762214 102762513 -115274645 - AluSx SINE Alu -9 303 3 2007 173 61 35 chr3 102762513 102762599 -115274559 - LTR47A LTR ERVL -329 123 41 684 101 20 0 chr3 102762599 102762698 -115274460 + AluSc SINE Alu 1 101 -208 2181 120 0 3 chr3 102762823 102763131 -115274027 + AluSc SINE Alu 1 307 -2 305 163 0 0 chr3 102763131 102763180 -115273978 - LTR47A LTR ERVL -403 49 1 592 276 77 51 chr3 102763180 102763608 -115273550 + L1M4 LINE L1 3156 3594 -2552 23 33 0 0 chr3 102764097 102764127 -115273031 + AT_rich Low_complexity Low_complexity 1 30 0 3263 124 61 15 chr3 102764447 102764987 -115272171 - MER61E LTR ERV1 -4 565 1 240 210 80 80 chr3 102764993 102765155 -115272003 - L1ME4a LINE L1 -125 5996 5835 21 0 0 0 chr3 102765205 102765226 -115271932 + AT_rich Low_complexity Low_complexity 1 21 0 19975 98 16 2 chr3 102765463 102769257 -115267901 - L1PA7 LINE L1 -3 6466 2626 12441 115 14 28 chr3 102769357 102771978 -115265180 - L1PA7 LINE L1 -3830 2631 4 351 281 37 0 chr3 102772176 102772311 -115264847 + MER104 DNA Tc2 2 141 -39 21 57 0 0 chr3 102772753 102772788 -115264370 + AT_rich Low_complexity Low_complexity 1 35 0 1927 133 3 3 chr3 102772915 102773201 -115263957 - AluSx SINE Alu -26 286 1 3419 107 12 46 chr3 102773527 102774199 -115262959 + L1MA6 LINE L1 5536 6300 0 1764 239 35 46 chr3 102774395 102774876 -115262282 - MLT1D LTR MaLR -29 476 1 1488 223 31 46 chr3 102774930 102775321 -115261837 + MLT1B LTR MaLR 6 390 0 305 302 54 40 chr3 102775344 102775493 -115261665 - L2 LINE L2 -1031 2283 2133 289 309 159 8 chr3 102775653 102775779 -115261379 - MIR SINE MIR -34 228 84 209 299 93 73 chr3 102776426 102776630 -115260528 - MIR SINE MIR -34 228 21 249 324 48 19 chr3 102777253 102777358 -115259800 - L2 LINE L2 -1 3312 3205 1329 234 4 0 chr3 102777525 102777777 -115259381 - MER90 LTR ERV1 0 614 362 4621 162 37 20 chr3 102777803 102778739 -115258419 - L1MA7 LINE L1 -2 6289 5338 2474 128 6 68 chr3 102778734 102779332 -115257826 - L1M1 LINE L1 -581 6424 5858 * 13413 114 9 8 chr3 102781770 102784300 -115252858 - L1P LINE L1 -1646 4500 1983 4077 206 30 13 chr3 102784400 102785376 -115251782 - L1M1 LINE L1 -986 5862 4871 2419 87 0 0 chr3 102785378 102785677 -115251481 - AluY SINE Alu -12 299 1 5687 138 47 5 chr3 102785677 102786733 -115250425 - L1M1 LINE L1 -4125 2724 1624 2487 112 8 36 chr3 102786733 102787117 -115250041 - THE1C LTR MaLR 0 375 3 1408 197 45 0 chr3 102787353 102787622 -115249536 - AluJo SINE Alu -31 281 1 6393 252 41 45 chr3 102787666 102791468 -115245690 - L1 LINE L1 -2201 3833 357 235 378 10 10 chr3 102791498 102791596 -115245562 - L1 LINE L1 -5501 454 357 320 331 155 11 chr3 102791700 102791978 -115245180 - L1M3a LINE L1 -5250 705 388 1132 327 95 39 chr3 102792160 102792888 -115244270 - L1M3a LINE L1 -5186 769 1 2095 239 17 17 chr3 102792897 102793416 -115243742 - LTR53 LTR ERVL 0 519 1 543 271 41 21 chr3 102793416 102793717 -115243441 - MER90 LTR ERV1 -247 328 3 784 267 72 5 chr3 102794649 102794870 -115242288 + MIR SINE MIR 1 236 -26 22 0 0 0 chr3 102795108 102795130 -115242028 + AT_rich Low_complexity Low_complexity 1 22 0 200 139 28 0 chr3 102796172 102796208 -115240950 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 234 366 79 14 chr3 102796815 102797031 -115240127 + L2 LINE L2 2820 3049 -223 209 384 54 18 chr3 102797115 102797227 -115239931 + L2 LINE L2 3143 3258 -14 25 0 0 0 chr3 102798481 102798506 -115238652 + AT_rich Low_complexity Low_complexity 1 25 0 26 50 0 0 chr3 102798786 102798826 -115238332 + AT_rich Low_complexity Low_complexity 1 40 0 595 261 98 73 chr3 102799182 102799538 -115237620 + MLT1G1 LTR MaLR 224 588 -7 441 281 136 30 chr3 102799542 102799741 -115237417 + MIR SINE MIR 40 259 -3 451 250 85 45 chr3 102799750 102799926 -115237232 - MIR SINE MIR -44 218 36 250 293 34 109 chr3 102802280 102802427 -115234731 + MIR3 SINE MIR 68 203 -5 271 253 35 11 chr3 102803018 102803067 -115234091 - L2 LINE L2 0 3313 3260 2244 117 0 0 chr3 102803067 102803365 -115233793 - AluSx SINE Alu -14 298 1 271 253 35 11 chr3 102803365 102803402 -115233756 - L2 LINE L2 -53 3260 3225 311 336 189 27 chr3 102803460 102804311 -115232847 - L2 LINE L2 -291 3022 1827 1898 160 0 0 chr3 102804468 102804931 -115232227 - AluSx SINE Alu 0 466 4 276 300 0 0 chr3 102804933 102805003 -115232155 - L2 LINE L2 -39 3274 3205 207 365 77 0 chr3 102805267 102805448 -115231710 - L2 LINE L2 -1898 1416 1222 1294 175 15 160 chr3 102806743 102806904 -115230254 - L1MD3 LINE L1 -10 7985 7802 274 152 212 0 chr3 102806904 102806970 -115230188 - MADE1 DNA Mariner 0 80 1 1294 175 15 160 chr3 102806970 102807206 -115229952 - L1MD3 LINE L1 -193 7802 7590 206 118 0 0 chr3 102807206 102807240 -115229918 + (T)n Simple_repeat Simple_repeat 1 34 0 254 159 0 0 chr3 102807280 102807324 -115229834 - L1PA16 LINE L1 -9 6157 6114 1786 82 12 16 chr3 102807325 102807581 -115229577 - MLT2A1 LTR ERVL 0 444 190 43621 40 7 2 chr3 102807581 102813698 -115223460 - L1PA4 LINE L1 -3 6152 4 1433 219 77 10 chr3 102813698 102814087 -115223071 - L1MC4a LINE L1 -370 7438 7024 765 248 118 4 chr3 102814085 102814331 -115222827 - L1MC4a LINE L1 -2101 5941 5668 * 4677 160 34 2 chr3 102814333 102815152 -115222006 + Tigger3(Golem) DNA MER2_type 1 845 -2184 949 148 0 7 chr3 102815153 102815344 -115221814 + AluSg/x SINE Alu 140 329 0 5500 127 13 8 chr3 102815346 102816188 -115220970 + Tigger3(Golem) DNA MER2_type 842 1687 -1342 274 141 16 16 chr3 102816357 102816421 -115220737 + GA-rich Low_complexity Low_complexity 3 66 0 284 316 179 42 chr3 102818493 102818806 -115218352 + L2 LINE L2 2606 2961 -353 1644 162 47 19 chr3 102818898 102819219 -115217939 - THE1C LTR MaLR -45 330 1 604 291 56 32 chr3 102819933 102820184 -115216974 - MLT1J LTR MaLR -14 497 241 264 93 23 0 chr3 102820241 102820284 -115216874 - MLT1J LTR MaLR -385 126 83 1851 198 31 67 chr3 102820288 102820416 -115216742 + MER74A LTR ERVL 12 143 -479 7493 31 0 0 chr3 102820416 102821425 -115215733 - L1PA3 LINE L1 0 6155 5143 1851 198 31 67 chr3 102821425 102821801 -115215357 + MER74A LTR ERVL 143 571 -51 2542 96 16 13 chr3 102821801 102822175 -115214983 - THE1C LTR MaLR 0 375 1 1851 198 31 67 chr3 102822175 102822226 -115214932 + MER74A LTR ERVL 571 622 0 419 171 0 45 chr3 102822233 102822344 -115214814 + L1MB7 LINE L1 6070 6175 -9 371 262 72 102 chr3 102822562 102822925 -115214233 - L1MC4a LINE L1 -459 5662 5311 247 221 32 21 chr3 102823093 102823188 -115213970 - HAL1 LINE L1 -1176 1331 1236 350 218 27 27 chr3 102825427 102825537 -115211621 + HAL1 LINE L1 947 1056 -1451 1077 166 0 30 chr3 102825870 102826069 -115211089 - MER3 DNA MER1_type -16 193 1 620 341 92 22 chr3 102826100 102826240 -115210918 - L2 LINE L2 0 3313 3184 14291 131 29 16 chr3 102826240 102828627 -115208531 + Tigger1 DNA MER2_type 1 2418 0 620 341 92 22 chr3 102828627 102829105 -115208053 - L2 LINE L2 -129 3184 2650 22 0 0 0 chr3 102829702 102829724 -115207434 + AT_rich Low_complexity Low_complexity 1 22 0 2145 177 45 26 chr3 102831151 102831223 -115205935 - MSTB LTR MaLR 0 426 357 2336 86 0 10 chr3 102831223 102831527 -115205631 + AluSc SINE Alu 1 301 -8 2145 177 45 26 chr3 102831527 102831872 -115205286 - MSTB LTR MaLR -69 357 1 181 250 62 21 chr3 102831883 102831931 -115205227 - MIR3 SINE MIR -48 160 111 705 290 67 63 chr3 102832072 102832535 -115204623 - MLT1K LTR MaLR -7 581 48 299 226 16 0 chr3 102832658 102832720 -115204438 + MIR SINE MIR 77 139 -123 430 243 35 65 chr3 102833042 102833211 -115203947 + MLT1C LTR MaLR 115 278 -189 331 170 60 50 chr3 102833237 102833337 -115203821 + MER88 LTR ERVL 81 181 -283 * 1245 269 81 26 chr3 102833250 102833707 -115203451 - MER74B LTR ERVL -74 548 67 409 353 47 13 chr3 102833735 102833970 -115203188 + L2 LINE L2 2592 2834 -480 1353 199 119 49 chr3 102834194 102834647 -115202511 - MER31A LTR ERV1 0 485 1 224 194 16 16 chr3 102834781 102834843 -115202315 + (TAAA)n Simple_repeat Simple_repeat 1 62 0 400 261 205 12 chr3 102834919 102835080 -115202078 + MIR SINE MIR 13 204 -58 23 0 0 0 chr3 102835537 102835560 -115201598 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr3 102835648 102835674 -115201484 + AT_rich Low_complexity Low_complexity 1 26 0 2196 106 0 0 chr3 102835936 102836228 -115200930 + AluSg1 SINE Alu 1 292 -17 226 287 92 23 chr3 102836721 102836808 -115200350 - L2 LINE L2 -657 2657 2565 2430 85 0 0 chr3 102837628 102837935 -115199223 - AluY SINE Alu -3 308 2 707 306 31 14 chr3 102838235 102838457 -115198701 - MIR SINE MIR -17 245 20 363 329 43 58 chr3 102838845 102839052 -115198106 + L3 LINE CR1 952 1155 -422 28 0 0 0 chr3 102839053 102839081 -115198077 + AT_rich Low_complexity Low_complexity 1 28 0 648 13 0 0 chr3 102839081 102839160 -115197998 - L1PA2 LINE L1 -2 6153 6075 183 310 46 35 chr3 102839717 102839804 -115197354 - L2 LINE L2 -2 3311 3224 * 244 341 29 52 chr3 102839798 102839971 -115197187 - L2 LINE L2 -189 3083 2915 357 312 53 35 chr3 102840143 102840313 -115196845 + L1MC/D LINE L1 5267 5439 -727 1058 190 6 2 chr3 102840321 102840525 -115196633 + L1PA16 LINE L1 5964 6165 0 240 373 78 4 chr3 102840514 102840758 -115196400 + L1MC/D LINE L1 5406 5667 -2141 * 300 361 52 62 chr3 102841167 102841571 -115195587 - L2 LINE L2 -557 2757 2358 819 207 41 0 chr3 102842492 102842661 -115194497 - FRAM SINE Alu 0 176 1 207 0 0 0 chr3 102843281 102843304 -115193854 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 446 275 90 28 chr3 102843622 102843800 -115193358 - MLT1J LTR MaLR -2 509 321 633 306 77 8 chr3 102843834 102844069 -115193089 - MLT1J LTR MaLR -259 252 2 302 29 0 0 chr3 102845276 102845311 -115191847 + U2 snRNA snRNA 1 35 -153 415 262 155 17 chr3 102847066 102847276 -115189882 - MIR SINE MIR -24 238 3 191 213 0 43 chr3 102847327 102847374 -115189784 - L2 LINE L2 -265 3048 3004 2060 125 3 25 chr3 102847496 102847816 -115189342 - AluSp SINE Alu 0 313 1 2497 66 0 0 chr3 102848745 102849047 -115188111 + AluY SINE Alu 1 302 -9 1050 224 12 0 chr3 102849047 102849293 -115187865 + L1M4 LINE L1 4411 4659 -1487 22 0 0 0 chr3 102849546 102849568 -115187590 + AT_rich Low_complexity Low_complexity 1 22 0 316 307 58 51 chr3 102849683 102849820 -115187338 - L2 LINE L2 -1 3271 3134 303 354 0 10 chr3 102849827 102849926 -115187232 + Charlie8 DNA MER1_type 2 99 -2318 486 288 58 1 chr3 102850320 102850472 -115186686 - MIR SINE MIR -62 146 30 256 318 23 0 chr3 102850649 102850737 -115186421 - MIR3 SINE MIR -1 207 118 350 203 34 0 chr3 102852126 102852244 -115184914 + (TAGA)n Simple_repeat Simple_repeat 1 122 0 2005 101 27 20 chr3 102852448 102852745 -115184413 + AluSx SINE Alu 1 299 -13 339 230 128 34 chr3 102852782 102852986 -115184172 - Charlie7 DNA MER1_type -6 2606 2384 230 307 141 10 chr3 102853082 102853274 -115183884 - Charlie7 DNA MER1_type -1954 658 442 263 242 41 52 chr3 102853454 102853648 -115183510 - Charlie7 DNA MER1_type -1 2611 2420 285 243 68 14 chr3 102854191 102854265 -115182893 - MIR SINE MIR -72 190 113 308 179 0 0 chr3 102854372 102854428 -115182730 - L1PA13 LINE L1 -7 6156 6101 1425 105 13 54 chr3 102854523 102854762 -115182396 - MER30 DNA MER1_type 0 230 2 180 0 0 0 chr3 102857033 102857053 -115180105 + (TTTTG)n Simple_repeat Simple_repeat 4 23 0 400 209 55 18 chr3 102857332 102857442 -115179716 + MIR3 SINE MIR 95 208 0 29 0 0 0 chr3 102860183 102860212 -115176946 + AT_rich Low_complexity Low_complexity 1 29 0 2177 112 0 3 chr3 102860849 102861153 -115176005 + AluSq SINE Alu 1 303 -10 319 202 21 0 chr3 102861157 102861251 -115175907 + GA-rich Low_complexity Low_complexity 5 100 0 2569 42 0 0 chr3 102861385 102861692 -115175466 - AluY SINE Alu -4 307 1 303 28 0 0 chr3 102862259 102862295 -115174863 + (TA)n Simple_repeat Simple_repeat 2 37 0 308 94 19 0 chr3 102862346 102862399 -115174759 + (TA)n Simple_repeat Simple_repeat 2 55 0 212 196 18 0 chr3 102862411 102862467 -115174691 + (TA)n Simple_repeat Simple_repeat 2 58 0 21 71 0 0 chr3 102862980 102863022 -115174136 + AT_rich Low_complexity Low_complexity 1 42 0 207 133 0 0 chr3 102863678 102863723 -115173435 + (T)n Simple_repeat Simple_repeat 1 45 0 12494 25 1 0 chr3 102863817 102866062 -115171096 - L1PA2 LINE L1 0 6155 3910 21 0 0 0 chr3 102867401 102867422 -115169736 + AT_rich Low_complexity Low_complexity 1 21 0 29 28 0 0 chr3 102867734 102867770 -115169388 + AT_rich Low_complexity Low_complexity 1 36 0 1027 234 13 0 chr3 102868058 102868289 -115168869 + MIR SINE MIR 15 248 -14 26 30 0 0 chr3 102870031 102870064 -115167094 + AT_rich Low_complexity Low_complexity 1 33 0 443 295 114 8 chr3 102870154 102870328 -115166830 - MIR SINE MIR -33 229 36 200 218 0 36 chr3 102870460 102870515 -115166643 - L2 LINE L2 -3 3310 3258 3115 214 14 0 chr3 102870859 102871527 -115165631 - L1P LINE L1 -1049 5097 4421 362 323 52 7 chr3 102871682 102871837 -115165321 + L2 LINE L2 3152 3313 0 251 357 61 33 chr3 102871958 102872171 -115164987 - L2 LINE L2 -780 2534 2316 491 268 106 0 chr3 102874419 102874561 -115162597 + MIR SINE MIR 5 161 -101 217 200 0 0 chr3 102876635 102876670 -115160488 + (TG)n Simple_repeat Simple_repeat 2 36 0 279 93 0 0 chr3 102877212 102877255 -115159903 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 468 281 98 39 chr3 102878241 102878444 -115158714 + MIR SINE MIR 25 239 -23 235 304 0 14 chr3 102878437 102878506 -115158652 - MIR SINE MIR -185 77 10 * 24 0 0 0 chr3 102878778 102878802 -115158356 + AT_rich Low_complexity Low_complexity 1 24 0 290 24 0 0 chr3 102879663 102879705 -115157453 - L1PA2 LINE L1 -1 6154 6113 2084 104 3 63 chr3 102879887 102880204 -115156954 - AluSc SINE Alu -11 298 1 297 237 50 65 chr3 102880368 102880507 -115156651 - L2 LINE L2 -876 2438 2302 21881 186 21 11 chr3 102880510 102886981 -115150177 + L1PA12 LINE L1 1 7599 -7 472 375 80 16 chr3 102887002 102887503 -115149655 - L2 LINE L2 -1005 2309 1777 4694 192 18 41 chr3 102887593 102888965 -115148193 - L1MB3 LINE L1 -1 6182 4852 1096 209 30 111 chr3 102888965 102889362 -115147796 - MLT1A1 LTR MaLR 0 365 1 4694 192 18 41 chr3 102889362 102889630 -115147528 - L1MB3 LINE L1 -1331 4852 4580 4533 253 43 24 chr3 102889620 102891279 -115145879 - L1MB3 LINE L1 -2028 4118 2429 * 182 343 135 44 chr3 102891925 102892243 -115144915 - L2 LINE L2 -2113 1201 855 549 165 0 48 chr3 102892300 102892403 -115144755 - MER63 DNA MER1_type -312 750 27 202 297 44 22 chr3 102892428 102892519 -115144639 - L2 LINE L2 -2465 849 757 703 263 39 0 chr3 102892535 102892714 -115144444 - MIR SINE MIR -5 257 72 850 276 105 8 chr3 102892719 102893081 -115144077 - L2 LINE L2 0 3313 2917 264 277 118 17 chr3 102893118 102893237 -115143921 - MER94 DNA DNA -3 131 1 1622 248 20 52 chr3 102893238 102893327 -115143831 - L2 LINE L2 -428 2886 2796 770 220 0 43 chr3 102893327 102893513 -115143645 + MER5B DNA MER1_type 1 178 0 1622 248 20 52 chr3 102893513 102893867 -115143291 - L2 LINE L2 -518 2796 2457 347 265 23 68 chr3 102893877 102894009 -115143149 + MIR SINE MIR 137 262 0 22 0 0 0 chr3 102894228 102894250 -115142908 + AT_rich Low_complexity Low_complexity 1 22 0 198 103 0 0 chr3 102894483 102894512 -115142646 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1494 190 19 0 chr3 102894517 102894780 -115142378 - AluJo SINE Alu -44 268 1 455 304 36 36 chr3 102897819 102897957 -115139201 - L2 LINE L2 -8 3264 3127 233 236 45 67 chr3 102898042 102898131 -115139027 + L2 LINE L2 3185 3271 -1 607 311 126 0 chr3 102899636 102899858 -115137300 + MIR SINE MIR 13 262 0 746 319 74 16 chr3 102900106 102900416 -115136742 + LTR16A LTR ERVL 52 379 -71 * 1286 176 13 59 chr3 102900415 102900722 -115136436 - Charlie1a DNA MER1_type -1121 334 42 2077 158 72 23 chr3 102900943 102901385 -115135773 + L1MB8 LINE L1 5715 6178 0 181 298 231 8 chr3 102901567 102901688 -115135470 - MIR SINE MIR 0 262 115 23 0 0 0 chr3 102902530 102902553 -115134605 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 102903940 102903962 -115133196 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr3 102905149 102905173 -115131985 + AT_rich Low_complexity Low_complexity 1 24 0 2072 99 0 45 chr3 102906036 102906348 -115130810 + AluSp SINE Alu 1 298 -15 471 387 18 21 chr3 102906377 102906656 -115130502 - L2 LINE L2 -640 2674 2397 28839 42 37 2 chr3 102906980 102910644 -115126514 + L1P LINE L1 1 3793 -2353 5108 22 2 0 chr3 102910644 102911231 -115125927 + L1PA2 LINE L1 5559 6155 0 234 200 91 0 chr3 102911970 102912025 -115125133 - Charlie7 DNA MER1_type -2515 97 38 1840 244 28 56 chr3 102912121 102912624 -115124534 - MER70B LTR ERVL 0 578 90 850 158 110 0 chr3 102912620 102912766 -115124392 - MER70B LTR ERVL -416 162 1 * 2156 123 40 6 chr3 102914629 102914978 -115122180 - THE1B LTR MaLR -1 363 3 252 0 0 0 chr3 102915317 102915345 -115121813 + (CA)n Simple_repeat Simple_repeat 1 28 0 970 89 0 0 chr3 102916304 102916428 -115120730 + AluSg/x SINE Alu 178 301 -11 25 0 0 0 chr3 102917032 102917057 -115120101 + AT_rich Low_complexity Low_complexity 1 25 0 1120 143 50 42 chr3 102917394 102917632 -115119526 - L1PA16 LINE L1 -3 6163 5924 680 306 48 20 chr3 102918170 102918464 -115118694 + MLT1L LTR MaLR 314 615 0 5494 158 45 5 chr3 102918690 102919840 -115117318 + L1MA9 LINE L1 5120 6311 -1 763 361 101 17 chr3 102919905 102920621 -115116537 - L2 LINE L2 -11 3302 2521 286 75 75 0 chr3 102920635 102920702 -115116456 + (TA)n Simple_repeat Simple_repeat 2 73 0 287 232 87 0 chr3 102920732 102920801 -115116357 - MIR SINE MIR -67 141 67 2091 43 0 0 chr3 102920996 102921251 -115115907 - L1PA3 LINE L1 -317 5838 5584 1838 27 0 9 chr3 102921251 102921469 -115115689 + L1PA4 LINE L1 5930 6152 -3 27 0 0 0 chr3 102922074 102922101 -115115057 + AT_rich Low_complexity Low_complexity 1 27 0 264 335 0 127 chr3 102923274 102923447 -115113711 - MER5A DNA MER1_type -29 160 10 23 68 0 0 chr3 102925316 102925360 -115111798 + AT_rich Low_complexity Low_complexity 1 44 0 319 304 65 91 chr3 102928355 102928631 -115108527 + LTR16C LTR ERVL 1 269 -222 7394 40 0 0 chr3 102928893 102929931 -115107227 - L1PA5 LINE L1 -6 6148 5111 8586 37 3 1 chr3 102929931 102930982 -115106176 + L1PA5 LINE L1 4048 5100 -1046 26 0 0 0 chr3 102930985 102931011 -115106147 + AT_rich Low_complexity Low_complexity 1 26 0 2022 133 0 3 chr3 102931328 102931628 -115105530 + AluSg SINE Alu 1 299 -11 2682 160 8 27 chr3 102931860 102932336 -115104822 - MLT1C LTR MaLR 0 467 1 2268 107 7 0 chr3 102934184 102934494 -115102664 + AluSx SINE Alu 1 312 0 265 268 131 60 chr3 102934967 102935039 -115102119 + MER5A DNA MER1_type 7 72 -117 689 176 56 0 chr3 102935039 102935164 -115101994 + FLAM_A SINE Alu 1 132 -1 265 268 131 60 chr3 102935164 102935259 -115101899 + MER5A DNA MER1_type 72 186 -3 269 203 25 38 chr3 102938178 102938257 -115098901 + GA-rich Low_complexity Low_complexity 3 80 0 2056 137 3 3 chr3 102940751 102941058 -115096100 + AluSx SINE Alu 2 308 -4 2829 279 193 2 chr3 102941418 102942502 -115094656 - L2 LINE L2 -744 2570 1280 589 168 42 8 chr3 102942507 102942626 -115094532 + Charlie5 DNA MER1_type 5 127 -2485 * 821 184 222 20 chr3 102942611 102942904 -115094254 + Charlie5 DNA MER1_type 2226 2577 -35 1084 264 142 108 chr3 102942904 102942991 -115094167 - L2 LINE L2 -2349 965 882 2285 121 0 0 chr3 102942991 102943298 -115093860 + AluSq SINE Alu 1 307 -6 1084 264 142 108 chr3 102943298 102944097 -115093061 - L2 LINE L2 -2432 882 49 433 157 102 19 chr3 102945360 102945468 -115091690 - MER103 DNA DNA -48 118 2 183 326 0 0 chr3 102945954 102946000 -115091158 + L2 LINE L2 3127 3172 -100 1117 278 81 11 chr3 102946593 102947145 -115090013 + L1MC4a LINE L1 5289 5816 -305 424 260 133 12 chr3 102949208 102949505 -115087653 - MLT1L LTR MaLR -94 521 162 2456 242 59 85 chr3 102949826 102950825 -115086333 + MER69B DNA AcHobo 2 974 -252 332 330 11 45 chr3 102950877 102950942 -115086216 - MIR SINE MIR -46 216 150 1040 314 38 10 chr3 102950942 102951340 -115085818 - MLT1I LTR MaLR 0 409 1 332 330 11 45 chr3 102951340 102951450 -115085708 - MIR SINE MIR -112 150 47 214 255 0 0 chr3 102951856 102951903 -115085255 + CT-rich Low_complexity Low_complexity 4 50 0 182 346 164 10 chr3 102951904 102952008 -115085150 - L2 LINE L2 -6 3266 3147 568 260 31 93 chr3 102953255 102953619 -115083539 - MLT1I LTR MaLR -25 384 39 2526 50 22 0 chr3 102953967 102954287 -115082871 + L1PA5 LINE L1 5826 6152 -2 24 0 0 0 chr3 102954968 102954992 -115082166 + AT_rich Low_complexity Low_complexity 1 24 0 4326 186 30 26 chr3 102955188 102956022 -115081136 - L1MB8 LINE L1 -15 6163 5318 2245 117 0 0 chr3 102956022 102956320 -115080838 - AluSq SINE Alu -15 298 1 4326 186 30 26 chr3 102956320 102957005 -115080153 - L1MB8 LINE L1 -860 5318 4637 23 33 0 0 chr3 102958917 102958947 -115078211 + AT_rich Low_complexity Low_complexity 1 30 0 2411 46 0 3 chr3 102959101 102959386 -115077772 + AluY SINE Alu 24 307 -4 221 97 0 0 chr3 102959408 102959439 -115077719 + MIR SINE MIR 232 262 0 331 254 167 29 chr3 102959669 102959775 -115077383 + MIR3 SINE MIR 40 171 -37 2239 112 0 3 chr3 102959775 102960089 -115077069 - AluSq SINE Alu 0 313 1 331 254 167 29 chr3 102960089 102960120 -115077038 + MIR3 SINE MIR 171 196 -12 2157 121 0 0 chr3 102961101 102961391 -115075767 - AluSc SINE Alu -19 290 1 190 224 0 86 chr3 102961530 102961588 -115075570 + L2 LINE L2 3259 3311 -2 648 243 143 14 chr3 102962243 102962453 -115074705 - MIR SINE MIR -1 261 25 2185 103 13 0 chr3 102963548 102963850 -115073308 - AluSp SINE Alu -6 307 2 321 367 34 0 chr3 102964196 102964343 -115072815 + MIR SINE MIR 2 153 -109 198 301 41 0 chr3 102964376 102964449 -115072709 + L2 LINE L2 3225 3300 -13 291 247 52 0 chr3 102964476 102964553 -115072605 - MIR SINE MIR -109 153 73 930 284 44 0 chr3 102964899 102965149 -115072009 - MIR SINE MIR 0 262 2 204 40 0 0 chr3 102967162 102967187 -115069971 + (TA)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr3 102968308 102968330 -115068828 + AT_rich Low_complexity Low_complexity 1 22 0 2009 162 69 29 chr3 102969706 102970175 -115066983 + MLT2B2 LTR ERVL 1 554 0 319 275 148 80 chr3 102970473 102970811 -115066347 + L2 LINE L2 2617 2977 -337 432 272 35 0 chr3 102971034 102971148 -115066010 - L2 LINE L2 -3 3310 3193 253 316 31 20 chr3 102972394 102972492 -115064666 + L2 LINE L2 3136 3234 -79 1709 136 85 25 chr3 102973217 102973571 -115063587 + THE1C LTR MaLR 1 375 0 9734 127 14 43 chr3 102973573 102975191 -115061967 + THE1C-int LTR MaLR 3 1574 -6 1548 168 70 54 chr3 102975196 102975565 -115061593 + THE1C LTR MaLR 1 375 0 240 314 171 7 chr3 102976148 102976288 -115060870 - MIR3 SINE MIR -2 206 44 2154 116 47 42 chr3 102976567 102976928 -115060230 + THE1B LTR MaLR 2 364 0 1944 189 48 24 chr3 102976928 102977303 -115059855 - MLT2B2 LTR ERVL -7 508 125 327 213 0 0 chr3 102977791 102977866 -115059292 - MLT2B2 LTR ERVL -440 75 1 21 57 0 0 chr3 102978024 102978059 -115059099 + AT_rich Low_complexity Low_complexity 1 35 0 269 228 63 38 chr3 102980217 102980296 -115056862 - MIR SINE MIR -10 252 172 362 286 41 0 chr3 102981252 102981350 -115055808 - MIR3 SINE MIR -44 164 63 2903 9 0 0 chr3 102982276 102982593 -115054565 + AluYb8 SINE Alu 1 317 -1 2104 85 16 63 chr3 102982923 102983240 -115053918 + AluSq SINE Alu 1 302 -11 1878 150 49 41 chr3 102983342 102983729 -115053429 - MLT1B LTR MaLR 0 390 1 21 89 0 0 chr3 102983833 102983889 -115053269 + AT_rich Low_complexity Low_complexity 1 56 0 692 143 0 156 chr3 102984375 102984599 -115052559 + MER53 DNA DNA 1 189 0 271 278 10 41 chr3 102984897 102984994 -115052164 + MIR3 SINE MIR 112 205 -3 294 252 8 16 chr3 102986227 102986350 -115050808 + GA-rich Low_complexity Low_complexity 3 124 0 366 227 70 16 chr3 102989423 102989551 -115047607 - Charlie7 DNA MER1_type 0 2612 2478 397 282 58 0 chr3 102989604 102989707 -115047451 - MIR3 SINE MIR -18 190 82 399 219 42 50 chr3 102989846 102989965 -115047193 - L2 LINE L2 -94 3219 3102 21 0 0 0 chr3 102989988 102990009 -115047149 + AT_rich Low_complexity Low_complexity 1 21 0 232 301 68 10 chr3 102990210 102990313 -115046845 + MIR3 SINE MIR 98 206 -2 1225 202 88 11 chr3 102991749 102992011 -115045147 + AluJo SINE Alu 1 282 -30 575 293 165 39 chr3 102992250 102992663 -115044495 - MLT1K LTR MaLR -2 586 122 641 254 41 45 chr3 102992891 102993111 -115044047 - MER20 DNA MER1_type 0 219 1 442 265 188 6 chr3 102993117 102993298 -115043860 + MIR SINE MIR 37 250 -12 532 299 78 4 chr3 102993300 102993544 -115043614 - MIR SINE MIR 0 262 1 230 260 195 24 chr3 102995897 102996020 -115041138 - MIR3 SINE MIR -7 201 58 2463 124 6 3 chr3 102996541 102996904 -115040254 - THE1B LTR MaLR 0 364 1 289 171 114 0 chr3 102998062 102998132 -115039026 - L2 LINE L2 -44 3228 3151 522 361 163 8 chr3 102998221 102998725 -115038433 - L2 LINE L2 -556 2758 2177 315 330 51 34 chr3 102998851 102999027 -115038131 + MIR SINE MIR 75 253 -9 276 365 107 48 chr3 102999516 102999806 -115037352 + L2 LINE L2 2966 3272 0 704 206 46 17 chr3 102999902 103000077 -115037081 + MIR SINE MIR 79 258 -4 181 359 98 22 chr3 103000821 103000913 -115036245 - L2 LINE L2 -37 3235 3137 694 286 48 1 chr3 103001197 103001419 -115035739 + MIR SINE MIR 1 236 -26 872 191 45 35 chr3 103002314 103002513 -115034645 - MER3 DNA MER1_type 0 209 9 216 0 0 0 chr3 103003708 103003732 -115033426 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 369 0 0 0 chr3 103003731 103003772 -115033386 + (TG)n Simple_repeat Simple_repeat 1 41 0 927 323 100 69 chr3 103004445 103005557 -115031601 - L2 LINE L2 -528 2786 1641 205 239 137 43 chr3 103005766 103005883 -115031275 - L2 LINE L2 -2602 712 585 1757 176 10 16 chr3 103008329 103008642 -115028516 + AluJo SINE Alu 1 311 -1 613 265 163 0 chr3 103008738 103008953 -115028205 - MIR SINE MIR -4 258 9 627 238 28 0 chr3 103009415 103009558 -115027600 - MER117 DNA MER1_type -50 147 1 22 70 0 0 chr3 103009996 103010039 -115027119 + AT_rich Low_complexity Low_complexity 1 43 0 211 283 131 30 chr3 103010544 103010643 -115026515 - L2 LINE L2 -10 3303 3195 22 70 0 0 chr3 103011280 103011323 -115025835 + AT_rich Low_complexity Low_complexity 1 43 0 24 32 0 0 chr3 103062031 103062062 -114975096 + AT_rich Low_complexity Low_complexity 1 31 0 1880 144 3 10 chr3 103062154 103062446 -114974712 - AluJb SINE Alu -22 290 1 332 298 18 0 chr3 103062541 103062655 -114974503 - MIR SINE MIR -30 232 117 240 163 0 0 chr3 103064414 103064457 -114972701 + (TA)n Simple_repeat Simple_repeat 2 44 0 246 279 47 0 chr3 103064458 103064544 -114972614 - L1MC4 LINE L1 -1339 6703 6614 230 308 77 17 chr3 103064480 103064597 -114972561 + L1MC4 LINE L1 6614 6737 -1305 * 254 345 133 0 chr3 103065303 103065416 -114971742 + L2 LINE L2 3140 3267 -5 1699 162 35 7 chr3 103065495 103065785 -114971373 + AluJo SINE Alu 1 298 -14 24 0 0 0 chr3 103066482 103066506 -114970652 + AT_rich Low_complexity Low_complexity 1 24 0 285 323 105 8 chr3 103066697 103066830 -114970328 + MIR3 SINE MIR 60 205 -3 21 36 0 0 chr3 103067286 103067314 -114969844 + AT_rich Low_complexity Low_complexity 1 28 0 728 252 179 13 chr3 103069432 103069745 -114967413 - L2 LINE L2 0 3313 2949 1212 281 183 58 chr3 103069920 103070768 -114966390 - L2 LINE L2 -1073 2241 1288 400 138 12 12 chr3 103071288 103071368 -114965790 + (TA)n Simple_repeat Simple_repeat 2 81 0 402 171 11 50 chr3 103073235 103073339 -114963819 - AluJ/FLAM SINE Alu -216 86 1 2019 133 0 3 chr3 103073345 103073647 -114963511 - AluSg SINE Alu -8 302 2 338 260 182 7 chr3 103074209 103074363 -114962795 - MIR SINE MIR -9 253 73 360 0 0 0 chr3 103076164 103076204 -114960954 + (TG)n Simple_repeat Simple_repeat 2 41 0 422 286 8 34 chr3 103076595 103076714 -114960444 - MER5B DNA MER1_type 0 178 63 279 224 33 133 chr3 103078418 103078628 -114958530 - MLT1K LTR MaLR -1 587 399 11020 162 33 19 chr3 103080370 103083572 -114953586 - L1MA4 LINE L1 -5 7714 4454 2314 87 7 0 chr3 103083572 103083872 -114953286 - AluSp SINE Alu -11 302 1 11020 162 33 19 chr3 103083872 103083972 -114953186 - L1MA4 LINE L1 -3265 4454 4357 3256 76 9 14 chr3 103083978 103084424 -114952734 - MLT2A1 LTR ERVL 0 444 1 5159 76 28 0 chr3 103084424 103084841 -114952317 - HERVL-A1 LTR ERVL 0 5654 5209 207 0 0 0 chr3 103084841 103084864 -114952294 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5159 76 28 0 chr3 103084864 103085134 -114952024 - HERVL-A1 LTR ERVL -445 5209 4948 * 7712 59 3 35 chr3 103085131 103086158 -114951000 - HERVL-A2 LTR ERVL -4660 994 1 3145 82 24 20 chr3 103086158 103086609 -114950549 - MLT2A2 LTR ERVL 0 453 1 3488 208 15 15 chr3 103086612 103087479 -114949679 - L1MA4 LINE L1 -3219 4346 3474 414 163 38 0 chr3 103087481 103087561 -114949597 - L1MA4 LINE L1 -5217 1348 1266 2115 127 0 6 chr3 103087597 103087911 -114949247 - AluSx SINE Alu 0 312 1 213 311 49 0 chr3 103088009 103088070 -114949088 + L2 LINE L2 3170 3233 -39 813 153 58 32 chr3 103088271 103088461 -114948697 + MER2 DNA MER2_type 12 206 -139 23 78 0 0 chr3 103088471 103088522 -114948636 + AT_rich Low_complexity Low_complexity 1 51 0 510 247 115 23 chr3 103089598 103089772 -114947386 - MIR SINE MIR 0 262 73 242 318 300 6 chr3 103089751 103089921 -114947237 - L2 LINE L2 -652 2662 2443 * 344 312 115 37 chr3 103090096 103090471 -114946687 + L2 LINE L2 2817 3220 -93 2395 71 0 0 chr3 103090538 103090832 -114946326 + AluY SINE Alu 2 295 -16 548 309 67 72 chr3 103091792 103092168 -114944990 + L2 LINE L2 2895 3268 -4 1078 210 69 39 chr3 103092272 103092605 -114944553 - MER2 DNA MER2_type 0 344 2 25 51 0 0 chr3 103093219 103093258 -114943900 + AT_rich Low_complexity Low_complexity 1 39 0 338 301 127 17 chr3 103093536 103093709 -114943449 + L1ME LINE L1 5530 5721 -400 201 171 0 0 chr3 103093915 103093950 -114943208 + T-rich Low_complexity Low_complexity 1 35 0 24 67 0 0 chr3 103094007 103094052 -114943106 + AT_rich Low_complexity Low_complexity 1 45 0 726 264 114 39 chr3 103094069 103094558 -114942600 - L1ME4a LINE L1 -14 6107 5582 458 326 64 34 chr3 103094708 103095164 -114941994 + L1ME LINE L1 5333 5818 -303 352 257 0 53 chr3 103095292 103095405 -114941753 - MER112 DNA MER1_type -142 118 12 25 75 0 0 chr3 103096100 103096153 -114941005 + AT_rich Low_complexity Low_complexity 1 53 0 189 121 0 0 chr3 103096427 103096460 -114940698 + (TA)n Simple_repeat Simple_repeat 2 34 0 424 283 42 25 chr3 103096510 103096747 -114940411 - L1MC4a LINE L1 -1882 5926 5686 1811 108 66 18 chr3 103097018 103097304 -114939854 + AluSx SINE Alu 1 300 -12 883 293 54 30 chr3 103097820 103098261 -114938897 + L1MC4a LINE L1 5449 5900 -1908 21 0 0 0 chr3 103098279 103098300 -114938858 + AT_rich Low_complexity Low_complexity 1 21 0 254 250 62 10 chr3 103098384 103098480 -114938678 + L1MC4a LINE L1 6074 6174 -1634 284 292 44 36 chr3 103099316 103099453 -114937705 + L2 LINE L2 2859 2996 -317 489 259 12 41 chr3 103099464 103099634 -114937524 + L2 LINE L2 3149 3313 0 684 272 184 36 chr3 103100857 103100875 -114936283 - L2 LINE L2 -92 3221 3207 401 54 18 0 chr3 103100875 103100931 -114936227 + (TG)n Simple_repeat Simple_repeat 2 58 0 684 272 184 36 chr3 103100931 103101276 -114935882 - L2 LINE L2 -106 3207 2804 26 64 0 0 chr3 103101845 103101892 -114935266 + AT_rich Low_complexity Low_complexity 1 47 0 541 252 19 39 chr3 103101941 103102096 -114935062 - MIR SINE MIR -38 224 73 25 65 0 0 chr3 103102690 103102736 -114934422 + AT_rich Low_complexity Low_complexity 1 46 0 2073 111 31 0 chr3 103103035 103103324 -114933834 + AluSc SINE Alu 1 298 -11 2091 110 0 26 chr3 103104988 103105000 -114932158 - AluSq SINE Alu -13 300 289 369 0 0 0 chr3 103105000 103105041 -114932117 + (TG)n Simple_repeat Simple_repeat 2 42 0 2091 110 0 26 chr3 103105041 103105336 -114931822 - AluSq SINE Alu -24 289 1 28 0 0 0 chr3 103105629 103105657 -114931501 + AT_rich Low_complexity Low_complexity 1 28 0 1724 136 43 7 chr3 103105663 103105942 -114931216 + AluSx SINE Alu 1 289 -23 4343 253 138 53 chr3 103106293 103108600 -114928558 + HAL1 LINE L1 4 2505 -2 626 224 0 0 chr3 103108647 103108772 -114928386 + FLAM_A SINE Alu 12 136 -6 29 70 0 0 chr3 103109207 103109264 -114927894 + AT_rich Low_complexity Low_complexity 1 57 0 269 352 72 32 chr3 103109502 103109627 -114927531 - L2 LINE L2 0 3272 3143 648 226 39 13 chr3 103110552 103110707 -114926451 - MIR SINE MIR -72 190 32 1553 161 69 43 chr3 103111546 103111893 -114925265 - MLT1A1 LTR MaLR 0 365 10 390 211 193 0 chr3 103112411 103112525 -114924633 - MIR SINE MIR 0 262 127 7386 32 0 0 chr3 103112576 103113998 -114923160 - L1PA5 LINE L1 -3 6151 4730 1777 122 0 0 chr3 103114126 103114371 -114922787 + AluSx SINE Alu 61 305 -7 465 183 0 24 chr3 103114371 103114453 -114922705 + MER58 DNA MER1_type 2341 2420 0 203 296 214 10 chr3 103114455 103114553 -114922605 - MIR SINE MIR -126 136 19 2241 143 127 15 chr3 103114950 103115424 -114921734 + LTR49 LTR ERV1 1 527 -68 243 61 0 0 chr3 103115796 103115829 -114921329 + (TG)n Simple_repeat Simple_repeat 2 34 0 1852 152 33 18 chr3 103117025 103117361 -114919797 + Tigger1 DNA MER2_type 4 344 -2074 1252 273 101 34 chr3 103117363 103118804 -114918354 + L1ME LINE L1 1488 3094 -3446 992 243 79 10 chr3 103118825 103119177 -114917981 + L1ME LINE L1 5585 5953 -605 3050 207 115 15 chr3 103119403 103120258 -114916900 + L1MC4 LINE L1 6477 7416 -626 1717 183 3 0 chr3 103120259 103120559 -114916599 + AluJb SINE Alu 1 301 -11 482 128 0 12 chr3 103120561 103120647 -114916511 + (GGGA)n Simple_repeat Simple_repeat 1 85 0 482 160 39 26 chr3 103120692 103120848 -114916310 + GA-rich Low_complexity Low_complexity 2 159 0 1358 255 80 32 chr3 103120850 103121324 -114915834 + L1MC4 LINE L1 7406 7902 -140 27 49 0 0 chr3 103121363 103121404 -114915754 + AT_rich Low_complexity Low_complexity 1 41 0 3299 161 9 12 chr3 103122423 103122993 -114914165 - Tigger1 DNA MER2_type -1 2417 1850 10700 129 40 30 chr3 103123230 103123483 -114913675 - Tigger1 DNA MER2_type -581 1837 1588 2158 78 0 41 chr3 103123483 103123816 -114913342 - AluSc SINE Alu 0 321 1 10700 129 40 30 chr3 103123816 103125380 -114911778 - Tigger1 DNA MER2_type -830 1588 1 367 100 83 0 chr3 103125772 103125832 -114911326 + L1PA16 LINE L1 6085 6149 -17 1785 180 0 19 chr3 103126562 103126879 -114910279 - AluJb SINE Alu -1 311 1 607 193 60 60 chr3 103126992 103127158 -114910000 + FRAM SINE Alu 1 166 0 21 0 0 0 chr3 103127572 103127593 -114909565 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr3 103128502 103128538 -114908620 + AT_rich Low_complexity Low_complexity 1 36 0 218 316 205 47 chr3 103129380 103129570 -114907588 + L2 LINE L2 3026 3245 -27 1574 205 125 23 chr3 103129573 103130052 -114907106 - MER69B DNA AcHobo -1303 1223 626 1856 128 0 0 chr3 103130052 103130309 -114906849 + AluSx SINE Alu 36 292 -20 1574 205 125 23 chr3 103130309 103130526 -114906632 - MER69B DNA AcHobo -1900 626 432 884 248 122 19 chr3 103130576 103130887 -114906271 - MER69B DNA AcHobo -882 344 2 21 36 0 0 chr3 103132914 103132942 -114904216 + GC_rich Low_complexity Low_complexity 1 28 0 259 222 37 0 chr3 103136277 103136331 -114900827 - MER20B DNA MER1_type -674 109 54 268 371 38 0 chr3 103137344 103137449 -114899709 - L2 LINE L2 -26 3287 3179 301 310 98 38 chr3 103138276 103138460 -114898698 - MIR SINE MIR -14 248 54 1096 296 89 15 chr3 103138708 103139178 -114897980 + L1MC4a LINE L1 5378 5882 -1926 2224 112 6 10 chr3 103139183 103139497 -114897661 + AluSq SINE Alu 1 313 0 250 333 151 0 chr3 103140062 103140155 -114897003 + MIR3 SINE MIR 84 190 -18 275 314 32 24 chr3 103140319 103140443 -114896715 - L2 LINE L2 -9 3304 3180 497 242 181 13 chr3 103140564 103140874 -114896284 - HAL1 LINE L1 -127 2380 2019 961 277 89 18 chr3 103141048 103141496 -114895662 - HAL1 LINE L1 -711 1796 1317 1878 213 117 13 chr3 103141642 103142182 -114894976 - LTR48B LTR ERV1 -40 604 9 458 150 10 20 chr3 103142210 103142310 -114894848 - L1MA4A LINE L1 -9 6294 6196 476 136 80 0 chr3 103142341 103142429 -114894729 + L1MA4 LINE L1 6089 6183 -117 6847 53 9 11 chr3 103142717 103144370 -114892788 + L1PA7 LINE L1 4513 6152 -2 2176 157 77 2 chr3 103144403 103144805 -114892353 - MSTB1 LTR MaLR 0 432 1 28 48 0 0 chr3 103145762 103145804 -114891354 + AT_rich Low_complexity Low_complexity 1 42 0 570 313 155 18 chr3 103145858 103146200 -114890958 - L2 LINE L2 -93 3220 2832 185 375 21 10 chr3 103147586 103147682 -114889476 - MIR3 SINE MIR -4 204 108 354 231 81 116 chr3 103149033 103149206 -114887952 + MER5A DNA MER1_type 1 167 -22 371 216 59 10 chr3 103149228 103149330 -114887828 + L2 LINE L2 3207 3313 0 21 36 0 0 chr3 103149384 103149412 -114887746 + AT_rich Low_complexity Low_complexity 1 28 0 185 0 40 0 chr3 103149941 103149966 -114887192 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 424 85 17 0 chr3 103150290 103150349 -114886809 - AluJo SINE Alu -14 298 239 * 796 211 46 6 chr3 103150346 103150521 -114886637 - AluJo SINE Alu -130 182 1 22 0 0 0 chr3 103153288 103153310 -114883848 + AT_rich Low_complexity Low_complexity 1 22 0 180 254 0 63 chr3 103153487 103153550 -114883608 + L2 LINE L2 3213 3271 -1 247 360 129 25 chr3 103153552 103153994 -114883164 + L2 LINE L2 1865 2352 -962 311 312 69 77 chr3 103154052 103154299 -114882859 - HAL1 LINE L1 -2071 436 192 2117 163 112 0 chr3 103154345 103154720 -114882438 - MSTB LTR MaLR -9 417 1 2216 100 0 13 chr3 103155773 103156083 -114881075 - AluY SINE Alu -5 306 1 556 200 40 32 chr3 103156085 103156210 -114880948 - FLAM_A SINE Alu -6 127 2 695 299 60 5 chr3 103156489 103156706 -114880452 + MIR SINE MIR 20 248 -14 238 340 98 10 chr3 103157379 103157582 -114879576 + L2 LINE L2 2140 2360 -954 2028 114 7 4 chr3 103158352 103158633 -114878525 + AluSx SINE Alu 21 302 -10 469 333 50 23 chr3 103159169 103159427 -114877731 - L2 LINE L2 -460 2854 2590 384 295 175 35 chr3 103159509 103160058 -114877100 - L2 LINE L2 -955 2359 1734 2658 127 16 0 chr3 103160067 103160492 -114876666 - L1M2 LINE L1 -551 6451 6020 5039 100 19 32 chr3 103160503 103160863 -114876295 - L1PB1 LINE L1 -5 6146 5783 362 57 19 0 chr3 103160863 103160916 -114876242 + (CA)n Simple_repeat Simple_repeat 2 55 0 5039 100 19 32 chr3 103160916 103161347 -114875811 - L1PB1 LINE L1 -368 5783 5365 * 11240 208 67 27 chr3 103161330 103163062 -114874096 - L1M2 LINE L1 -1019 5829 4167 8271 68 3 5 chr3 103163062 103164135 -114873023 - MER11C LTR ERVK 0 1071 1 11240 208 67 27 chr3 103164135 103166761 -114870397 - L1M2 LINE L1 -2681 4167 1267 286 245 189 9 chr3 103166940 103167046 -114870112 + L2 LINE L2 3189 3313 0 961 328 30 35 chr3 103167684 103168117 -114869041 - L2 LINE L2 -1 3312 2882 23 0 0 0 chr3 103169570 103169593 -114867565 + AT_rich Low_complexity Low_complexity 1 23 0 194 159 23 0 chr3 103169597 103169641 -114867517 + L3 LINE CR1 804 848 -729 278 319 12 108 chr3 103171402 103171643 -114865515 + L2 LINE L2 3032 3249 -23 305 308 27 34 chr3 103173030 103173176 -114863982 + L1ME LINE L1 4699 4843 -1303 476 273 93 28 chr3 103173494 103173765 -114863393 + L1ME LINE L1 5313 5602 -519 744 222 64 12 chr3 103173904 103174075 -114863083 + MER5A DNA MER1_type 1 180 -9 842 95 0 0 chr3 103174512 103174617 -114862541 + AluSp SINE Alu 3 107 -206 194 159 23 0 chr3 103174724 103174768 -114862390 + L3 LINE CR1 804 848 -729 2408 54 0 13 chr3 103175482 103175780 -114861378 + AluY SINE Alu 5 298 -13 234 0 0 0 chr3 103176695 103176721 -114860437 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 2965 130 17 6 chr3 103177621 103178089 -114859069 - L1PA15 LINE L1 -9 6156 5684 362 401 29 21 chr3 103178219 103178498 -114858660 - L2 LINE L2 0 3272 2992 230 316 0 0 chr3 103178760 103178817 -114858341 - L2 LINE L2 0 3272 3216 25 0 0 0 chr3 103179144 103179169 -114857989 + AT_rich Low_complexity Low_complexity 1 25 0 2187 112 0 7 chr3 103185608 103185913 -114851245 + AluSg1 SINE Alu 1 303 -6 223 370 0 72 chr3 103186960 103187098 -114850060 + L2 LINE L2 3137 3264 -8 2153 115 0 0 chr3 103188913 103189200 -114847958 + AluSx SINE Alu 1 287 -25 2043 122 4 0 chr3 103189406 103189685 -114847473 + AluSx SINE Alu 1 280 -32 234 0 0 0 chr3 103189685 103189711 -114847447 + (TAA)n Simple_repeat Simple_repeat 1 26 0 385 330 123 16 chr3 103190355 103190722 -114846436 - L2 LINE L2 -8 3264 2859 2288 104 0 13 chr3 103194949 103195266 -114841892 + AluSp SINE Alu 1 313 0 433 257 90 21 chr3 103197664 103197808 -114839350 - MER5B DNA MER1_type -12 166 13 8253 132 11 2 chr3 103198939 103200227 -114836931 - HSMAR2 DNA Mariner -1 1301 2 261 360 76 84 chr3 103203791 103204041 -114833117 - L2 LINE L2 -49 3223 2976 1159 191 14 0 chr3 103204125 103204340 -114832818 + MER20 DNA MER1_type 1 218 -1 21 0 0 0 chr3 103204451 103204472 -114832686 + AT_rich Low_complexity Low_complexity 1 21 0 319 208 135 78 chr3 103205109 103205301 -114831857 - L1ME LINE L1 -317 5804 5602 2280 105 0 3 chr3 103205418 103205723 -114831435 + AluY SINE Alu 1 304 -7 303 237 184 18 chr3 103205727 103205841 -114831317 - L1ME LINE L1 -798 5444 5312 327 289 24 0 chr3 103206948 103207031 -114830127 - L2 LINE L2 -1 3312 3228 1574 212 3 0 chr3 103207546 103207848 -114829310 + AluJb SINE Alu 1 303 -9 190 295 170 0 chr3 103208504 103208616 -114828542 - MIR SINE MIR -66 196 66 29 0 0 0 chr3 103209890 103209919 -114827239 + AT_rich Low_complexity Low_complexity 1 29 0 1549 113 0 26 chr3 103209953 103210184 -114826974 - L1PA8A LINE L1 0 6131 5907 276 127 0 0 chr3 103212134 103212189 -114824969 + (T)n Simple_repeat Simple_repeat 1 55 0 42810 35 21 2 chr3 103212217 103218253 -114818905 - L1PA3 LINE L1 0 6155 1 289 221 128 0 chr3 103220138 103220224 -114816934 - MIR SINE MIR -110 152 56 467 105 0 0 chr3 103220347 103220423 -114816735 - L1MB4 LINE L1 0 6180 6105 1557 220 18 18 chr3 103220823 103221164 -114815994 - MER58B DNA MER1_type 0 341 1 516 289 96 70 chr3 103221195 103221496 -114815662 + MER102b DNA MER1_type 33 341 0 767 264 60 5 chr3 103222019 103222220 -114814938 + MIR SINE MIR 47 258 -4 550 343 42 14 chr3 103222716 103222932 -114814226 + MIR SINE MIR 34 255 -7 362 267 152 52 chr3 103223433 103223643 -114813515 + MIR SINE MIR 30 260 -2 319 292 90 42 chr3 103225856 103226000 -114811158 + MIR3 SINE MIR 36 186 -22 372 270 25 72 chr3 103226250 103226502 -114810656 - MLT1I LTR MaLR -147 262 60 22 35 0 0 chr3 103227182 103227211 -114809947 + AT_rich Low_complexity Low_complexity 1 29 0 1221 155 0 21 chr3 103227350 103227544 -114809614 - AluJb SINE Alu -117 195 6 218 271 51 34 chr3 103227615 103227674 -114809484 - L2 LINE L2 -4 3268 3209 2120 122 0 0 chr3 103228021 103228309 -114808849 - AluSx SINE Alu -24 288 1 7265 51 1 0 chr3 103229654 103230830 -114806328 + L1PA5 LINE L1 4978 6154 0 400 301 66 22 chr3 103230927 103231110 -114806048 + L1ME LINE L1 4010 4200 -1946 470 279 96 25 chr3 103231414 103231895 -114805263 + L1ME LINE L1 4621 5135 -1011 1955 187 59 46 chr3 103231903 103232380 -114804778 - MLT1D LTR MaLR 0 505 23 568 195 98 8 chr3 103232493 103232616 -114804542 + AluJo SINE Alu 1 134 -178 322 273 43 22 chr3 103232654 103232897 -114804261 + L1ME LINE L1 5308 5431 -690 263 248 18 101 chr3 103233426 103233535 -114803623 + MIR SINE MIR 5 104 -158 8282 195 16 6 chr3 103233539 103236056 -114801102 + L1PA15 LINE L1 3629 6165 0 534 296 110 4 chr3 103236090 103236354 -114800804 - MER46C DNA MER2_type -38 300 9 203 226 32 48 chr3 103236381 103236443 -114800715 + MIR SINE MIR 196 256 -6 25 0 0 0 chr3 103236460 103236485 -114800673 + AT_rich Low_complexity Low_complexity 1 25 0 30 0 0 0 chr3 103237010 103237040 -114800118 + AT_rich Low_complexity Low_complexity 1 30 0 429 189 364 0 chr3 103238126 103238269 -114798889 - MER3 DNA MER1_type 0 209 15 268 346 124 46 chr3 103238558 103239124 -114798034 + L2 LINE L2 1738 2347 -967 609 284 103 30 chr3 103239503 103239932 -114797226 - L1MC4a LINE L1 -1657 6151 5692 217 258 138 38 chr3 103240239 103240398 -114796760 + L2 LINE L2 2884 3058 -214 419 190 78 106 chr3 103241731 103241910 -114795248 - MER69A DNA AcHobo -3 174 1 619 199 48 0 chr3 103243521 103243667 -114793491 - MER58B DNA MER1_type -6 335 183 514 335 72 61 chr3 103244796 103245277 -114791881 + L2 LINE L2 2720 3272 0 302 265 49 0 chr3 103245580 103245682 -114791476 - MIR SINE MIR -47 215 109 185 114 86 0 chr3 103245692 103245727 -114791431 + MIR SINE MIR 127 164 -98 429 333 40 16 chr3 103246056 103246246 -114790912 + MIR SINE MIR 40 235 -27 26 30 0 0 chr3 103246260 103246293 -114790865 + AT_rich Low_complexity Low_complexity 1 33 0 23 54 0 0 chr3 103246745 103246782 -114790376 + AT_rich Low_complexity Low_complexity 1 37 0 347 309 19 43 chr3 103247807 103247969 -114789189 + MIR SINE MIR 102 259 -3 21 71 0 0 chr3 103248922 103248964 -114788194 + AT_rich Low_complexity Low_complexity 1 42 0 342 129 0 0 chr3 103254063 103254125 -114783033 + (TA)n Simple_repeat Simple_repeat 2 63 0 204 265 10 98 chr3 103254309 103254411 -114782747 + MER5B DNA MER1_type 86 178 0 306 224 47 47 chr3 103255307 103255392 -114781766 + MIR SINE MIR 26 110 -152 226 105 53 0 chr3 103255733 103255771 -114781387 - MIR3 SINE MIR -13 195 156 2323 194 49 14 chr3 103255845 103256398 -114780760 + MER90 LTR ERV1 1 614 0 2284 113 52 22 chr3 103256560 103256967 -114780191 + MSTB1 LTR MaLR 1 419 -13 225 348 75 61 chr3 103260548 103260841 -114776317 + L2 LINE L2 2940 3236 -36 2270 97 3 10 chr3 103260871 103261171 -114775987 - AluSx SINE Alu -14 298 1 701 146 57 6 chr3 103261395 103261553 -114775605 + L1MB4 LINE L1 6015 6180 0 507 266 130 5 chr3 103262340 103262532 -114774626 + MIR SINE MIR 13 228 -34 247 211 110 92 chr3 103262585 103262694 -114774464 + L2 LINE L2 3158 3268 -4 2005 189 132 29 chr3 103263199 103263744 -114773414 - MER7C DNA MER2_type 0 602 2 715 183 107 6 chr3 103263784 103263953 -114773205 + MLT1D LTR MaLR 312 497 -8 2408 71 7 0 chr3 103263987 103264282 -114772876 - AluSp SINE Alu -16 297 1 494 248 87 13 chr3 103264320 103264469 -114772689 - MIR SINE MIR -74 188 29 2343 84 7 3 chr3 103264704 103265003 -114772155 + AluSg SINE Alu 1 300 -10 790 178 69 55 chr3 103265314 103265516 -114771642 - MER58A DNA MER1_type -19 205 1 1523 173 39 20 chr3 103266795 103267101 -114770057 - AluJo SINE Alu 0 312 1 3367 131 122 25 chr3 103267102 103267784 -114769374 + Tigger2 DNA MER2_type 14 761 -1957 1171 174 53 4 chr3 103267824 103268071 -114769087 + Tigger2 DNA MER2_type 2457 2715 -3 21 0 0 0 chr3 103268404 103268425 -114768733 + AT_rich Low_complexity Low_complexity 1 21 0 224 319 116 29 chr3 103269278 103269416 -114767742 - L2 LINE L2 -5 3308 3159 972 304 106 52 chr3 103269438 103270013 -114767145 - L2 LINE L2 -556 2758 2153 929 196 115 29 chr3 103270175 103270384 -114766774 - MIR SINE MIR -16 246 20 1675 168 0 35 chr3 103270621 103270907 -114766251 - AluJb SINE Alu -24 288 13 186 43 0 0 chr3 103271125 103271148 -114766010 + (TC)n Simple_repeat Simple_repeat 2 24 0 2342 95 0 25 chr3 103271900 103272215 -114764943 + AluSg SINE Alu 1 307 -3 198 0 0 0 chr3 103272708 103272730 -114764428 + (A)n Simple_repeat Simple_repeat 1 22 0 2295 105 0 0 chr3 103272730 103273026 -114764132 + AluSx SINE Alu 1 296 -16 433 261 162 8 chr3 103275916 103276064 -114761094 - MER5A DNA MER1_type 0 189 9 200 250 105 26 chr3 103276229 103276305 -114760853 + MER5B DNA MER1_type 97 178 0 2027 180 123 4 chr3 103276926 103277420 -114759738 + MER68 LTR ERV1 1 553 -9 268 242 32 0 chr3 103278425 103278487 -114758671 + L2 LINE L2 3201 3264 -8 330 331 40 27 chr3 103278733 103278881 -114758277 + MER5A DNA MER1_type 38 187 -2 24 32 0 0 chr3 103279971 103280002 -114757156 + GC_rich Low_complexity Low_complexity 1 31 0 1045 104 22 50 chr3 103280114 103280296 -114756862 - AluJb SINE Alu 0 312 136 677 250 88 5 chr3 103280855 103281059 -114756099 - MIR SINE MIR 0 262 42 2040 134 3 10 chr3 103281633 103281946 -114755212 + AluSq SINE Alu 1 311 -2 194 318 16 0 chr3 103281986 103282049 -114755109 + GA-rich Low_complexity Low_complexity 3 66 0 1520 174 131 19 chr3 103282438 103282566 -114754592 + MER63B DNA MER1_type 21 133 -929 533 41 0 14 chr3 103282566 103282639 -114754519 + (TATAG)n Simple_repeat Simple_repeat 3 74 0 1520 174 131 19 chr3 103282639 103282884 -114754274 + MER63B DNA MER1_type 133 436 0 185 362 95 0 chr3 103285060 103285176 -114751982 + MIR3 SINE MIR 50 176 -32 591 188 8 31 chr3 103285561 103285689 -114751469 + MSTB1 LTR MaLR 308 432 0 203 302 0 16 chr3 103286313 103286376 -114750782 + CT-rich Low_complexity Low_complexity 5 66 0 397 230 67 118 chr3 103286727 103286845 -114750313 - MIR SINE MIR -81 181 73 1864 165 0 17 chr3 103286845 103287142 -114750016 + AluJb SINE Alu 1 292 -20 397 230 67 118 chr3 103287142 103287201 -114749957 - MIR SINE MIR -189 73 13 201 132 0 0 chr3 103288784 103288822 -114748336 + (T)n Simple_repeat Simple_repeat 1 38 0 22 0 0 0 chr3 103289427 103289449 -114747709 + AT_rich Low_complexity Low_complexity 1 22 0 2053 138 0 0 chr3 103289620 103289910 -114747248 + AluSx SINE Alu 4 293 -19 218 130 0 37 chr3 103289923 103289977 -114747181 + (GAAAA)n Simple_repeat Simple_repeat 1 52 0 1871 126 82 0 chr3 103290381 103290651 -114746507 - AluSx SINE Alu -20 292 1 238 321 103 38 chr3 103290963 103291147 -114746011 + MIR SINE MIR 46 241 -21 207 100 0 0 chr3 103291245 103291275 -114745883 + (A)n Simple_repeat Simple_repeat 1 30 0 2202 105 26 10 chr3 103291646 103291952 -114745206 - AluSx SINE Alu -1 311 1 284 282 74 55 chr3 103292172 103292335 -114744823 + MIR SINE MIR 49 214 -48 25 31 0 0 chr3 103292410 103292442 -114744716 + AT_rich Low_complexity Low_complexity 1 32 0 226 331 96 15 chr3 103292711 103292847 -114744311 - MIR3 SINE MIR -40 168 22 414 214 93 29 chr3 103293813 103293953 -114743205 - MER5A DNA MER1_type -32 157 9 833 206 59 0 chr3 103294654 103294824 -114742334 + MER5A DNA MER1_type 2 181 -8 2187 113 0 28 chr3 103294863 103295181 -114741977 + AluSx SINE Alu 1 309 -3 521 294 12 12 chr3 103295717 103295880 -114741278 + MIR SINE MIR 45 207 -55 437 348 6 25 chr3 103296721 103296882 -114740276 + MER5A DNA MER1_type 4 161 -28 423 0 0 0 chr3 103297392 103297439 -114739719 + (CAT)n Simple_repeat Simple_repeat 3 49 0 361 231 64 0 chr3 103298035 103298113 -114739045 - MER5A DNA MER1_type -64 125 43 1453 223 231 35 chr3 103298501 103299283 -114737875 - Charlie2 DNA MER1_type -19 2843 1908 856 270 91 20 chr3 103299307 103299603 -114737555 - Charlie2 DNA MER1_type -2531 331 15 245 307 62 66 chr3 103300442 103300620 -114736538 + L1ME4a LINE L1 5332 5510 -732 2226 101 10 0 chr3 103300620 103300916 -114736242 + AluSx SINE Alu 1 299 -13 245 307 62 66 chr3 103300916 103300981 -114736177 + L1ME4a LINE L1 5510 5574 -668 317 265 202 49 chr3 103300987 103301274 -114735884 + L1ME4a LINE L1 5590 5920 -201 318 136 0 0 chr3 103302053 103302097 -114735061 + MIR3 SINE MIR 117 160 -48 377 284 60 15 chr3 103302118 103302252 -114734906 + Charlie8 DNA MER1_type 61 200 -2217 1666 158 18 7 chr3 103302253 103302525 -114734633 + AluJo SINE Alu 5 279 -33 221 368 66 7 chr3 103303259 103303395 -114733763 + MIR3 SINE MIR 52 195 -13 197 222 56 0 chr3 103303694 103303748 -114733410 - MIR SINE MIR -122 140 84 952 208 52 6 chr3 103303756 103304060 -114733098 - MLT1A1 LTR MaLR -5 423 1 372 281 67 12 chr3 103305338 103305502 -114731656 - MIR SINE MIR -9 253 81 2133 184 117 20 chr3 103305892 103306381 -114730777 - LTR64 LTR ERVK 0 558 23 870 221 111 23 chr3 103306478 103306695 -114730463 - MER45C DNA AcHobo 0 953 718 5261 153 22 20 chr3 103306732 103307630 -114729528 - MER49 LTR ERV1 -21 902 3 1017 258 114 42 chr3 103307640 103308205 -114728953 - MER45C DNA AcHobo -253 700 57 23 0 0 0 chr3 103309297 103309320 -114727838 + AT_rich Low_complexity Low_complexity 1 23 0 407 228 11 22 chr3 103309960 103310052 -114727106 + MER92B LTR ERV1 1 91 -545 347 183 14 14 chr3 103310180 103310251 -114726907 + MER92C LTR ERV1 484 554 0 369 0 0 0 chr3 103310649 103310690 -114726468 + (TG)n Simple_repeat Simple_repeat 1 41 0 286 299 17 8 chr3 103311228 103311345 -114725813 + L1MC/D LINE L1 5711 5829 -292 304 277 119 10 chr3 103311382 103311483 -114725675 + L2 LINE L2 3184 3295 -18 23 0 0 0 chr3 103311606 103311629 -114725529 + AT_rich Low_complexity Low_complexity 1 23 0 341 347 33 8 chr3 103313490 103313611 -114723547 + L2 LINE L2 3144 3267 -5 21 0 0 0 chr3 103313773 103313794 -114723364 + AT_rich Low_complexity Low_complexity 1 21 0 2187 121 3 0 chr3 103313794 103314100 -114723058 - AluSx SINE Alu -5 307 1 27 29 0 0 chr3 103315678 103315712 -114721446 + AT_rich Low_complexity Low_complexity 1 34 0 1009 184 0 6 chr3 103315717 103315885 -114721273 - AluJo SINE Alu -17 295 129 860 165 0 0 chr3 103316186 103316313 -114720845 - AluJo SINE Alu -185 127 1 478 113 0 72 chr3 103316500 103316694 -114720464 + (TGG)n Simple_repeat Simple_repeat 1 180 0 524 114 4 71 chr3 103316720 103317004 -114720154 + (TGG)n Simple_repeat Simple_repeat 1 264 0 270 152 25 51 chr3 103317004 103317083 -114720075 + (ATGGTG)n Simple_repeat Simple_repeat 2 78 0 448 122 5 69 chr3 103317088 103317276 -114719882 + (TGG)n Simple_repeat Simple_repeat 3 178 0 345 102 0 97 chr3 103317289 103317475 -114719683 + (TGG)n Simple_repeat Simple_repeat 2 169 0 2030 122 7 20 chr3 103318278 103318582 -114718576 - AluSx SINE Alu -12 300 1 1360 124 15 0 chr3 103318694 103318896 -114718262 + L1MB2 LINE L1 5965 6169 -2 455 245 13 21 chr3 103319226 103319351 -114717807 + MER5A DNA MER1_type 14 121 -57 262 304 148 26 chr3 103319544 103319659 -114717499 + MIR3 SINE MIR 45 173 -35 197 208 0 19 chr3 103319860 103319913 -114717245 + (TATATG)n Simple_repeat Simple_repeat 6 57 0 453 314 93 30 chr3 103320229 103320465 -114716693 + MIR SINE MIR 12 262 0 227 324 124 50 chr3 103321283 103321524 -114715634 - L3b LINE CR1 -84 1499 1241 347 168 44 26 chr3 103321643 103321756 -114715402 + CT-rich Low_complexity Low_complexity 4 118 0 2265 95 7 0 chr3 103322919 103323213 -114713945 - AluSp SINE Alu -17 296 1 350 279 8 70 chr3 103324892 103325021 -114712137 - L2 LINE L2 -8 3305 3185 5000 132 33 13 chr3 103325213 103326129 -114711029 - Ricksha DNA DNA -13 3238 2355 837 113 28 14 chr3 103326133 103326274 -114710884 - Ricksha DNA DNA -1037 144 2 3243 164 42 26 chr3 103326275 103326964 -114710194 + Charlie1 DNA MER1_type 2062 2761 0 348 213 31 102 chr3 103327634 103327761 -114709397 - MIR SINE MIR -28 234 117 21 0 0 0 chr3 103328032 103328053 -114709105 + AT_rich Low_complexity Low_complexity 1 21 0 200 233 0 0 chr3 103328630 103328673 -114708485 + (TAA)n Simple_repeat Simple_repeat 1 43 0 24 32 0 0 chr3 103331046 103331077 -114706081 + AT_rich Low_complexity Low_complexity 1 31 0 1756 177 54 33 chr3 103331541 103331930 -114705228 + LTR52 LTR ERVL 4 400 -21 903 302 24 4 chr3 103332172 103332427 -114704731 - MIR SINE MIR -2 260 1 270 0 0 0 chr3 103333147 103333177 -114703981 + (CA)n Simple_repeat Simple_repeat 2 31 0 26 0 0 0 chr3 103333945 103333971 -114703187 + AT_rich Low_complexity Low_complexity 1 26 0 298 216 279 9 chr3 103334174 103334285 -114702873 - L2 LINE L2 0 3313 3173 733 281 152 30 chr3 103334899 103335552 -114701606 - L2 LINE L2 -4 3309 2575 243 313 40 0 chr3 103335881 103335980 -114701178 + L2 LINE L2 3197 3299 -14 227 370 130 6 chr3 103337818 103337980 -114699178 - MIR3 SINE MIR -11 197 16 2726 214 30 10 chr3 103338023 103338615 -114698543 - MER77 LTR ERV1 0 605 2 1986 129 0 0 chr3 103338748 103339027 -114698131 + AluSx SINE Alu 1 279 -33 977 218 45 5 chr3 103339171 103339391 -114697767 - MLT1D LTR MaLR 0 505 277 613 150 45 95 chr3 103339426 103339626 -114697532 - MLT1D LTR MaLR -311 194 5 383 256 72 0 chr3 103340850 103340975 -114696183 + MER69 DNA AcHobo 2384 2517 -9 288 314 9 29 chr3 103341078 103341183 -114695975 - MER5A DNA MER1_type -2 187 85 208 121 0 0 chr3 103341985 103342018 -114695140 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1765 169 0 11 chr3 103343142 103343421 -114693737 - AluSx SINE Alu -36 276 1 794 181 0 39 chr3 103343707 103343789 -114693369 + MSTB LTR MaLR 1 76 -350 1822 125 96 34 chr3 103343789 103344142 -114693016 - THE1C LTR MaLR 0 375 1 794 181 0 39 chr3 103344142 103344214 -114692944 + MSTB LTR MaLR 76 149 -277 285 203 16 31 chr3 103345673 103345737 -114691421 + 7SK RNA RNA 1 63 -130 401 235 82 0 chr3 103345847 103345932 -114691226 + MER81 DNA DNA 1 92 -22 22 0 0 0 chr3 103347222 103347244 -114689914 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr3 103347768 103347792 -114689366 + AT_rich Low_complexity Low_complexity 1 24 0 893 314 83 14 chr3 103347917 103348474 -114688684 - L1ME3 LINE L1 -215 5947 5353 947 308 54 23 chr3 103348784 103349170 -114687988 + L2 LINE L2 2916 3313 0 306 50 0 0 chr3 103349271 103349311 -114687847 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 230 220 42 136 chr3 103350423 103350541 -114686617 - MIR3 SINE MIR -1 207 101 2786 140 68 25 chr3 103350566 103351112 -114686046 + Tigger3(Golem) DNA MER2_type 1 3029 0 231 363 0 20 chr3 103351927 103352029 -114685129 + MIR3 SINE MIR 77 176 -32 355 321 62 26 chr3 103352089 103352282 -114684876 + MIR SINE MIR 32 231 -31 2736 239 38 14 chr3 103352667 103353925 -114683233 + L1M2 LINE L1 1657 2968 -4200 4078 152 28 58 chr3 103353932 103354982 -114682176 + L1M2 LINE L1 5477 6491 -743 3323 106 47 4 chr3 103355138 103355628 -114681530 - MER9 LTR ERVK 0 511 1 2127 260 70 50 chr3 103355814 103356881 -114680277 + MER97a DNA MER1_type? 1 1089 -1 924 242 118 6 chr3 103356887 103357201 -114679957 + L1ME3 LINE L1 5609 5957 -205 185 0 0 39 chr3 103358015 103358041 -114679117 + (TTTCC)n Simple_repeat Simple_repeat 5 29 0 861 289 118 17 chr3 103358089 103358620 -114678538 - MLT1G1 LTR MaLR 0 555 3 268 222 0 16 chr3 103358730 103358793 -114678365 + L2 LINE L2 3206 3267 -5 205 272 25 37 chr3 103358892 103358907 -114678251 - MIR SINE MIR -30 232 218 2448 208 13 2 chr3 103358907 103359374 -114677784 - MER70A LTR ERVL 0 472 1 205 272 25 37 chr3 103359374 103359439 -114677719 - MIR SINE MIR -44 218 153 260 267 70 12 chr3 103359763 103359849 -114677309 + MIR SINE MIR 116 206 -56 34 55 0 0 chr3 103360139 103360194 -114676964 + AT_rich Low_complexity Low_complexity 1 55 0 264 288 24 8 chr3 103360698 103360823 -114676335 + L1MC4 LINE L1 7123 7249 -793 * 765 115 0 0 chr3 103360817 103360930 -114676228 - L1P3 LINE L1 -524 5630 5518 587 102 0 0 chr3 103360905 103360993 -114676165 + L1PA8 LINE L1 6085 6172 0 * 408 269 89 121 chr3 103361151 103361814 -114675344 + L1MC4a LINE L1 7166 7887 -155 1798 139 0 7 chr3 103362101 103362374 -114674784 + AluSx SINE Alu 3 273 -39 618 285 110 13 chr3 103362385 103362613 -114674545 - MIR SINE MIR -7 255 6 23 0 0 0 chr3 103362755 103362778 -114674380 + AT_rich Low_complexity Low_complexity 1 23 0 5022 96 20 30 chr3 103362964 103363178 -114673980 + L1PB1 LINE L1 5380 5594 -557 2273 72 28 0 chr3 103363178 103363468 -114673690 + AluY SINE Alu 1 298 -13 5022 96 20 30 chr3 103363468 103364032 -114673126 + L1PB1 LINE L1 5594 6151 0 29 47 0 0 chr3 103364639 103364682 -114672476 + AT_rich Low_complexity Low_complexity 1 43 0 184 204 136 0 chr3 103365518 103365562 -114671596 + L2 LINE L2 3264 3313 0 440 168 0 59 chr3 103367419 103367520 -114669638 - MLT1D LTR MaLR -398 107 13 610 120 11 0 chr3 103369252 103369344 -114667814 + MSTB1 LTR MaLR 340 432 0 21 0 0 0 chr3 103369913 103369934 -114667224 + AT_rich Low_complexity Low_complexity 1 21 0 182 162 0 0 chr3 103370761 103370798 -114666360 + T-rich Low_complexity Low_complexity 1 37 0 1786 153 150 13 chr3 103372207 103372580 -114664578 - MSTA LTR MaLR -4 424 1 275 274 0 0 chr3 103372672 103372734 -114664424 + ERVL LTR ERVL 2335 2396 -3368 697 326 86 3 chr3 103373209 103373510 -114663648 + ERVL LTR ERVL 2516 2841 -2155 373 338 93 39 chr3 103373799 103374154 -114663004 + MLT1J2 LTR MaLR 77 450 0 622 348 35 43 chr3 103374228 103374745 -114662413 - L2 LINE L2 -517 2797 2285 21 0 0 0 chr3 103375847 103375868 -114661290 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 103375964 103375987 -114661171 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr3 103376256 103376291 -114660867 + AT_rich Low_complexity Low_complexity 1 35 0 370 308 118 31 chr3 103376817 103377178 -114659980 - L1MC/D LINE L1 -1989 5888 5469 264 59 0 0 chr3 103377178 103377212 -114659946 + (TG)n Simple_repeat Simple_repeat 2 35 0 370 308 118 31 chr3 103377212 103377359 -114659799 - L1MC/D LINE L1 -2408 5469 5336 380 365 48 14 chr3 103377550 103377966 -114659192 - L1MC/D LINE L1 -1170 5045 4616 820 223 16 11 chr3 103378003 103378187 -114658971 + AluJb SINE Alu 125 309 -3 30 0 0 0 chr3 103382889 103382919 -114654239 + AT_rich Low_complexity Low_complexity 1 30 0 1580 168 4 11 chr3 103382929 103383209 -114653949 - L1MC1 LINE L1 -13 6320 6043 1006 264 217 17 chr3 103383658 103384465 -114652693 - L1MC/D LINE L1 -2260 3955 2988 1136 186 45 7 chr3 103384472 103384741 -114652417 + L1M4 LINE L1 2644 2922 -3224 1416 222 61 15 chr3 103384742 103385085 -114652073 + MLT1A2 LTR MaLR 15 373 -1 812 285 114 33 chr3 103385119 103386993 -114650165 - L1MC/D LINE L1 -4195 2201 74 189 391 20 13 chr3 103387722 103387873 -114649285 - L2 LINE L2 -429 2885 2734 1037 157 0 0 chr3 103387935 103388088 -114649070 + AluSg/x SINE Alu 134 286 -26 281 73 0 113 chr3 103388209 103388560 -114648598 + (TA)n Simple_repeat Simple_repeat 1 311 0 511 324 104 43 chr3 103388653 103389048 -114648110 - HAL1b LINE L1 -864 484 66 6168 177 17 8 chr3 103389567 103391735 -114645423 - L1PB1 LINE L1 -2 6149 3959 405 235 16 0 chr3 103391728 103391850 -114645308 - L1P LINE L1 -1773 4373 4247 * 433 240 208 10 chr3 103391857 103392049 -114645109 - MLT1H1 LTR MaLR -35 520 291 23 33 0 0 chr3 103392276 103392306 -114644852 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr3 103392715 103392740 -114644418 + AT_rich Low_complexity Low_complexity 1 25 0 2072 125 3 7 chr3 103393986 103394283 -114642875 - AluSg SINE Alu -11 299 4 22 35 0 0 chr3 103396000 103396029 -114641129 + AT_rich Low_complexity Low_complexity 1 29 0 349 359 57 53 chr3 103396262 103396524 -114640634 + L1M4b LINE L1 131 393 -6466 292 353 43 67 chr3 103396530 103396585 -114640573 - L2 LINE L2 -737 2577 2522 2328 101 0 0 chr3 103396585 103396892 -114640266 + AluSx SINE Alu 2 308 -4 292 353 43 67 chr3 103396892 103397136 -114640022 - L2 LINE L2 -792 2522 2285 221 254 34 34 chr3 103398300 103398359 -114638799 - L3b LINE CR1 -243 1340 1282 288 247 11 45 chr3 103398550 103398639 -114638519 + MARNA DNA Mariner 146 231 -355 243 306 41 0 chr3 103399030 103399128 -114638030 + MARNA DNA Mariner 145 246 -340 608 332 68 35 chr3 103399174 103399779 -114637379 - L1MC4a LINE L1 -1906 5902 5278 2439 34 40 0 chr3 103399794 103400090 -114637068 + AluY SINE Alu 1 308 -3 891 199 5 16 chr3 103400329 103400515 -114636643 + MER34 LTR ERV1 12 195 -347 626 175 0 18 chr3 103450543 103450657 -114586501 - HUERS-P3b LTR ERV1 -6898 520 409 335 216 41 52 chr3 103450660 103450757 -114586401 - HUERS-P3b LTR ERV1 -7322 96 1 282 103 0 0 chr3 103450757 103450796 -114586362 - LTR9B LTR ERV1 0 644 606 221 342 58 58 chr3 103452530 103452685 -114584473 - MER5A DNA MER1_type -18 171 17 23 0 0 0 chr3 103452763 103452786 -114584372 + AT_rich Low_complexity Low_complexity 1 23 0 2220 88 197 3 chr3 103452798 103453173 -114583985 + LTR7 LTR ERV1 1 448 -2 5436 152 12 41 chr3 103453175 103454772 -114582386 + HERVH LTR ERV1 1 1680 -6033 1850 92 14 3 chr3 103454874 103455158 -114582000 - HUERS-P3b LTR ERV1 -4008 3410 3124 231 167 24 0 chr3 103455158 103455200 -114581958 - LTR22A LTR ERVK 0 458 416 * 2136 180 30 2 chr3 103455190 103455591 -114581567 + LTR8 LTR ERV1 30 441 -250 10883 127 34 21 chr3 103455591 103457463 -114579695 - HUERS-P3b LTR ERV1 -4776 2642 747 7724 103 14 52 chr3 103457576 103458944 -114578214 + HERVH LTR ERV1 2679 3994 -3719 5212 116 7 4 chr3 103458960 103459790 -114577368 + HERVH LTR ERV1 3994 4778 -2935 1032 88 82 28 chr3 103459786 103459968 -114577190 + HERVH LTR ERV1 7522 7713 0 * 2080 94 43 8 chr3 103459968 103460344 -114576814 + LTR7 LTR ERV1 1 448 -2 22 35 0 0 chr3 103460567 103460596 -114576562 + AT_rich Low_complexity Low_complexity 1 29 0 219 246 0 0 chr3 103462979 103463036 -114574122 + (TATG)n Simple_repeat Simple_repeat 4 60 0 666 208 19 0 chr3 103463079 103463238 -114573920 - MER93b LTR ERV1 -112 261 100 5681 78 9 0 chr3 103463271 103464040 -114573118 + L1PA8 LINE L1 5394 6169 -3 2152 194 40 16 chr3 103464079 103464607 -114572551 - ERVL LTR ERVL -1133 4631 4049 637 242 11 28 chr3 103464660 103464842 -114572316 - MLT1A2 LTR MaLR 0 374 196 2614 241 34 17 chr3 103464905 103465552 -114571606 - MLT-int LTR MaLR 0 1735 1078 21 0 0 0 chr3 103466606 103466627 -114570531 + AT_rich Low_complexity Low_complexity 1 21 0 1668 64 5 0 chr3 103466899 103467102 -114570056 - AluSx SINE Alu -108 204 1 21 36 0 0 chr3 103467401 103467429 -114569729 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr3 103467755 103467787 -114569371 + AT_rich Low_complexity Low_complexity 1 32 0 381 22 0 0 chr3 103468197 103468243 -114568915 + (CA)n Simple_repeat Simple_repeat 2 47 0 528 209 0 0 chr3 103468491 103468606 -114568552 - L1MA10 LINE L1 -4 6330 6216 187 327 74 6 chr3 103469279 103469441 -114567717 - L2 LINE L2 -36 3277 3105 23 54 0 0 chr3 103469750 103469787 -114567371 + AT_rich Low_complexity Low_complexity 1 37 0 1334 276 87 24 chr3 103469943 103470728 -114566430 - Charlie7 DNA MER1_type -440 2172 1339 265 199 15 137 chr3 103470762 103470893 -114566265 - Charlie7 DNA MER1_type -1619 993 879 5917 154 41 35 chr3 103470946 103473254 -114563904 - L1MA4A LINE L1 -11 6994 4703 786 208 20 35 chr3 103473250 103473452 -114563706 - L1MA4A LINE L1 -6650 199 1 * 706 308 31 31 chr3 103473517 103473777 -114563381 - MIR SINE MIR 0 262 3 1911 207 53 23 chr3 103473793 103474267 -114562891 + MER89 LTR ERV1 46 533 -26 1236 249 31 6 chr3 103475013 103475366 -114561792 - L1ME1 LINE L1 -5 6161 5800 322 148 49 0 chr3 103475421 103475482 -114561676 + LTR41 LTR ERVL 91 154 -619 273 258 65 11 chr3 103475720 103475813 -114561345 + LTR41 LTR ERVL 510 607 -166 1891 166 0 0 chr3 103476038 103476354 -114560804 - AluSx SINE Alu 0 316 1 1066 245 55 4 chr3 103476583 103476840 -114560318 + L1 LINE L1 5 274 -5617 3586 191 19 21 chr3 103476898 103477695 -114559463 + L1 LINE L1 3017 3811 -2159 864 181 0 0 chr3 103477695 103477844 -114559314 + AluJb SINE Alu 164 312 0 1057 147 0 0 chr3 103477846 103478016 -114559142 + L1 LINE L1 4774 4943 -1027 2086 114 19 56 chr3 103478033 103478409 -114558749 - L1PA16 LINE L1 -301 5865 5504 2132 325 25 12 chr3 103478425 103479249 -114557909 + ERVL LTR ERVL 4543 5377 -387 2094 134 50 34 chr3 103479279 103479637 -114557521 - THE1B LTR MaLR 0 364 1 546 281 20 13 chr3 103479948 103480101 -114557057 + LTR41 LTR ERVL 22 175 -598 323 283 97 53 chr3 103480346 103480593 -114556565 + LTR41 LTR ERVL 510 767 -6 1793 248 46 50 chr3 103480599 103481406 -114555752 - L1ME1 LINE L1 -363 5803 5003 606 97 0 0 chr3 103481406 103481499 -114555659 - L1MA5A LINE L1 0 6297 6205 1793 248 46 50 chr3 103481499 103481777 -114555381 - L1ME1 LINE L1 -1163 5003 4725 2439 237 100 17 chr3 103481780 103482716 -114554442 - L1ME1 LINE L1 -1492 4654 3641 232 147 0 0 chr3 103483170 103483204 -114553954 - tRNA-Cys-TGC tRNA tRNA -38 37 4 360 304 66 36 chr3 103483911 103484214 -114552944 + L1M4 LINE L1 3908 4219 -1927 33 56 0 0 chr3 103484360 103484414 -114552744 + AT_rich Low_complexity Low_complexity 1 54 0 1808 108 0 0 chr3 103484493 103484724 -114552434 + AluSx SINE Alu 1 231 -81 938 166 18 6 chr3 103484765 103484928 -114552230 + L1PA16 LINE L1 5993 6157 -9 353 303 11 11 chr3 103485277 103485366 -114551792 - MIR SINE MIR -160 102 14 454 276 25 49 chr3 103486934 103487097 -114550061 + L2 LINE L2 2277 2435 -879 5452 253 21 15 chr3 103487384 103489895 -114547263 - L1PA12 LINE L1 -2848 4736 2198 235 292 62 21 chr3 103490158 103490254 -114546904 - L1PA12 LINE L1 -5399 2182 2083 495 326 120 44 chr3 103490408 103490948 -114546210 - L1PA12 LINE L1 -6206 1368 788 21 0 0 0 chr3 103490956 103490977 -114546181 + AT_rich Low_complexity Low_complexity 1 21 0 262 350 57 51 chr3 103491057 103491214 -114545944 - MER5A DNA MER1_type 0 189 32 4508 61 24 0 chr3 103491434 103492011 -114545147 + LTR10C LTR ERV1 1 591 0 3427 150 98 34 chr3 103492359 103493040 -114544118 - LTR8A LTR ERV1 0 727 3 2283 193 26 75 chr3 103494025 103494668 -114542490 - LTR9 LTR ERV1 0 612 1 21 36 0 0 chr3 103495177 103495205 -114541953 + AT_rich Low_complexity Low_complexity 1 28 0 268 234 269 21 chr3 103496401 103496546 -114540612 - MER5A DNA MER1_type -3 186 6 191 365 71 30 chr3 103496571 103496768 -114540390 - L2 LINE L2 -408 2906 2702 922 235 19 8 chr3 103497215 103497478 -114539680 - L1ME LINE L1 -686 5480 5218 11294 209 20 19 chr3 103497479 103499149 -114538009 + ERVL-B1 LTR ERVL 2723 4397 -1367 2324 100 3 0 chr3 103499149 103499449 -114537709 + AluSp SINE Alu 1 301 -12 11294 209 20 19 chr3 103499449 103500104 -114537054 + ERVL-B1 LTR ERVL 4397 5050 -714 1606 205 46 11 chr3 103500103 103500474 -114536684 + ERVL-B1 LTR ERVL 5236 5619 -145 * 1509 216 26 7 chr3 103500498 103500804 -114536354 + MLT2B1 LTR ERVL 7 318 -202 261 0 0 0 chr3 103501133 103501162 -114535996 + (A)n Simple_repeat Simple_repeat 1 29 0 38 0 0 0 chr3 103501449 103501487 -114535671 + AT_rich Low_complexity Low_complexity 1 38 0 670 249 26 10 chr3 103501765 103501958 -114535200 - MLT1A1-int LTR MaLR -1539 196 1 1240 209 15 98 chr3 103501958 103502356 -114534802 - MLT1A1 LTR MaLR 0 365 1 2108 251 13 2 chr3 103502357 103502828 -114534330 - ERVL LTR ERVL -1749 4015 3540 2039 144 126 5 chr3 103502828 103503210 -114533948 - MSTA LTR MaLR 0 428 1 244 256 274 17 chr3 103503644 103503761 -114533397 + MER5A DNA MER1_type 41 187 -2 229 354 31 0 chr3 103505075 103505171 -114531987 - LTR67 LTR ERVL -362 195 97 207 362 14 0 chr3 103505667 103505736 -114531422 - MER5A DNA MER1_type -13 176 107 252 331 82 38 chr3 103505817 103506001 -114531157 + L2 LINE L2 2603 2794 -520 216 182 18 36 chr3 103508613 103508668 -114528490 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 1190 143 16 66 chr3 103508676 103508831 -114528327 - MER93b LTR ERV1 -117 256 116 5663 79 94 1 chr3 103508831 103509746 -114527412 + L1PA8 LINE L1 5177 6170 -2 1190 143 16 66 chr3 103509746 103509834 -114527324 - MER93b LTR ERV1 -257 116 25 21 71 0 0 chr3 103509837 103509879 -114527279 + AT_rich Low_complexity Low_complexity 1 42 0 393 258 55 8 chr3 103510130 103510258 -114526900 - MER65-int LTR ERV1 -604 6933 6800 1991 117 27 7 chr3 103510273 103510573 -114526585 + AluSx SINE Alu 1 306 -6 469 287 7 28 chr3 103510585 103510728 -114526430 - MER65-int LTR ERV1 -232 4704 4565 459 299 14 20 chr3 103510702 103510849 -114526309 - MER65-int LTR ERV1 -941 3930 3785 * 406 227 0 11 chr3 103510854 103510942 -114526216 - MER65-int LTR ERV1 -579 4357 4271 8340 63 11 2 chr3 103511728 103512788 -114524370 + MER11C LTR ERVK 1 1070 -1 25 20 0 59 chr3 103513006 103513057 -114524101 + AT_rich Low_complexity Low_complexity 1 48 0 28 48 0 0 chr3 103513155 103513197 -114523961 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr3 103513432 103513454 -114523704 + AT_rich Low_complexity Low_complexity 1 22 0 1906 145 0 47 chr3 103514542 103514859 -114522299 - AluSx SINE Alu -8 304 3 1943 181 89 20 chr3 103515585 103516032 -114521126 - L1PA16 LINE L1 -11 6155 5678 * 2320 198 28 8 chr3 103516031 103516936 -114520222 + L1PA16 LINE L1 4754 5675 -491 2238 94 13 10 chr3 103518744 103519053 -114518105 - AluSx SINE Alu -2 310 1 309 302 31 0 chr3 103519689 103519785 -114517373 - LTR67 LTR ERVL -362 195 97 202 312 81 98 chr3 103520289 103520462 -114516696 - MER5B DNA MER1_type -14 175 6 203 289 21 10 chr3 103523255 103523352 -114513806 + (TA)n Simple_repeat Simple_repeat 1 98 0 1448 204 35 43 chr3 103523352 103523475 -114513683 - MER93b LTR ERV1 -1 372 250 2049 41 0 0 chr3 103523475 103523721 -114513437 - L1PA5 LINE L1 -1 6153 5908 1448 204 35 43 chr3 103523721 103523970 -114513188 - MER93b LTR ERV1 -123 250 3 221 193 18 0 chr3 103524112 103524169 -114512989 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 271 312 21 28 chr3 103524213 103524354 -114512804 - MER65-int LTR ERV1 -703 7113 6974 515 259 6 78 chr3 103524483 103524520 -114512638 - MER65-int LTR ERV1 -941 3930 3892 1423 111 44 31 chr3 103524520 103524746 -114512412 + MER30 DNA MER1_type 1 229 -1 515 259 6 78 chr3 103524746 103524874 -114512284 - MER65-int LTR ERV1 -979 3892 3777 * 2014 232 34 16 chr3 103524858 103525363 -114511795 - MER65-int LTR ERV1 -565 4371 3858 1971 195 82 2 chr3 103525365 103525765 -114511393 + MSTB1 LTR MaLR 1 432 0 1123 150 31 92 chr3 103525772 103526066 -114511092 - MER65-int LTR ERV1 -1086 3850 3575 609 268 100 17 chr3 103526222 103526461 -114510697 - MER34C LTR ERV1 -172 413 155 2444 64 0 3 chr3 103526817 103527115 -114510043 - AluY SINE Alu -14 297 1 1685 237 51 111 chr3 103527495 103528248 -114508910 + LTR8 LTR ERV1 1 691 0 261 0 0 0 chr3 103528320 103528349 -114508809 + (TA)n Simple_repeat Simple_repeat 1 29 0 2182 100 10 3 chr3 103529417 103529708 -114507450 - AluSq SINE Alu -20 293 1 266 253 11 11 chr3 103529900 103529995 -114507163 + (TA)n Simple_repeat Simple_repeat 1 95 0 207 0 0 0 chr3 103530208 103530231 -114506927 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2323 193 34 24 chr3 103530976 103531879 -114505279 + L1P4 LINE L1 4766 5675 -491 1729 148 121 67 chr3 103532400 103532806 -114504352 + MSTA LTR MaLR 1 428 0 6863 139 13 45 chr3 103532808 103533977 -114503181 + MSTA-int LTR MaLR 3 1133 -447 2864 175 7 0 chr3 103533976 103534626 -114502532 - L1M1 LINE L1 -744 5402 4776 * 251 314 58 51 chr3 103536473 103536629 -114500529 + MER5B DNA MER1_type 21 177 -1 336 89 0 0 chr3 103536763 103536808 -114500350 + Alu SINE Alu 1 45 -258 505 103 0 13 chr3 103536808 103536886 -114500272 + AluSp/q SINE Alu 227 303 -10 294 279 10 10 chr3 103539605 103539709 -114497449 + (TA)n Simple_repeat Simple_repeat 1 104 0 1399 207 67 3 chr3 103539718 103540047 -114497111 - MER93b LTR ERV1 -22 351 2 440 307 32 77 chr3 103540050 103540389 -114496769 - MER65-int LTR ERV1 -491 7325 7002 419 278 83 35 chr3 103540543 103540687 -114496471 - MER65-int LTR ERV1 -941 3930 3780 * 1771 241 36 16 chr3 103540674 103541167 -114495991 - MER65-int LTR ERV1 -565 4371 3869 472 267 55 0 chr3 103541199 103541345 -114495813 + MSTB1 LTR MaLR 22 175 -257 758 199 124 31 chr3 103541353 103541644 -114495514 - MER65-int LTR ERV1 -1993 2943 2626 22 56 0 0 chr3 103541857 103541893 -114495265 + AT_rich Low_complexity Low_complexity 1 36 0 38 75 0 0 chr3 103542566 103542646 -114494512 + AT_rich Low_complexity Low_complexity 1 80 0 197 81 0 27 chr3 103542661 103542698 -114494460 + (TTTTTA)n Simple_repeat Simple_repeat 6 41 0 24 0 0 0 chr3 103542701 103542725 -114494433 + AT_rich Low_complexity Low_complexity 1 24 0 602 186 0 0 chr3 103542731 103542860 -114494298 + L1P LINE L1 4316 4444 -1702 567 250 73 29 chr3 103543114 103543318 -114493840 + LTR7 LTR ERV1 238 450 0 5426 232 62 86 chr3 103543318 103546091 -114491067 + HERVH LTR ERV1 1 2707 -5006 462 115 0 11 chr3 103546091 103546202 -114490956 - L1PA4 LINE L1 0 6155 6068 10340 203 18 12 chr3 103546209 103548380 -114488778 + HERVH LTR ERV1 5530 7713 0 528 248 20 27 chr3 103548682 103548831 -114488327 + LTR7 LTR ERV1 303 450 0 5831 119 7 2 chr3 103548831 103550532 -114486626 + L1PA12 LINE L1 4440 6153 -15 22 0 0 0 chr3 103550533 103550555 -114486603 + AT_rich Low_complexity Low_complexity 1 22 0 306 179 0 0 chr3 103550562 103550618 -114486540 + L1MC4 LINE L1 6648 6703 -1339 1205 145 13 13 chr3 103550753 103550988 -114486170 - L1MA2 LINE L1 -1 6303 6069 5812 152 8 12 chr3 103550988 103551087 -114486071 - L1MA2 LINE L1 -80 7643 7545 6705 77 8 0 chr3 103551087 103552050 -114485108 + L1PA8 LINE L1 5193 6162 -10 5812 152 8 12 chr3 103552050 103553429 -114483729 - L1MA2 LINE L1 -178 7545 6170 2487 86 30 16 chr3 103553429 103553801 -114483357 - MER11A LTR ERVK 0 1266 890 * 3683 34 23 2 chr3 103553796 103554307 -114482851 - MER11A LTR ERVK -649 617 1 3342 181 28 4 chr3 103554307 103554988 -114482170 - L1MA2 LINE L1 -1390 6175 5479 2013 108 45 7 chr3 103554989 103555376 -114481782 - LTR7 LTR ERV1 0 450 1 4016 168 23 1 chr3 103555376 103556120 -114481038 - L1MA2 LINE L1 -2083 5482 4723 18399 180 38 18 chr3 103556121 103556774 -114480384 - L1MA2 LINE L1 -3609 3956 3318 254 95 24 0 chr3 103556774 103556816 -114480342 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 18399 180 38 18 chr3 103556816 103556922 -114480236 - L1MA2 LINE L1 -4247 3318 3216 1266 148 5 0 chr3 103556922 103557138 -114480020 - L1PB1 LINE L1 0 6151 5935 18399 180 38 18 chr3 103557138 103560225 -114476933 - L1MA2 LINE L1 -4349 3216 27 27 29 0 0 chr3 103560273 103560307 -114476851 + AT_rich Low_complexity Low_complexity 1 34 0 309 319 71 71 chr3 103562605 103562774 -114474384 - MER5A DNA MER1_type -11 178 10 369 233 58 0 chr3 103564573 103564659 -114472499 - LTR49-int LTR ERV1 -777 4159 4069 441 277 24 47 chr3 103564784 103564997 -114472161 - LTR49-int LTR ERV1 -2253 2683 2476 207 0 0 0 chr3 103565259 103565282 -114471876 + (A)n Simple_repeat Simple_repeat 1 23 0 297 204 8 76 chr3 103565305 103565437 -114471721 - LTR49-int LTR ERV1 -2715 3616 3494 4418 194 30 3 chr3 103565437 103566359 -114470799 - L1 LINE L1 -1838 5727 4781 19304 164 33 28 chr3 103566465 103567704 -114469454 - L1 LINE L1 -3861 3704 2473 1930 165 3 0 chr3 103567704 103568001 -114469157 - AluSx SINE Alu -14 298 1 19304 164 33 28 chr3 103568001 103569145 -114468013 - L1 LINE L1 -5092 2473 1336 342 122 0 0 chr3 103569145 103569194 -114467964 - AluJ/FLAM SINE Alu -229 73 25 1615 120 8 13 chr3 103569194 103569464 -114467694 + AluSq SINE Alu 50 318 0 19304 164 33 28 chr3 103569464 103570694 -114466464 - L1 LINE L1 -6228 1337 18 1254 210 54 35 chr3 103570958 103571483 -114465675 - LTR49-int LTR ERV1 -3346 2985 883 748 203 84 30 chr3 103571613 103571908 -114465250 - MER34C LTR ERV1 -172 413 60 3347 227 71 46 chr3 103572382 103573419 -114463739 + LTR28 LTR ERV1 1 636 0 187 211 115 0 chr3 103573430 103573482 -114463676 - L3 LINE CR1 -672 905 848 2271 110 0 7 chr3 103573499 103573807 -114463351 + AluSx SINE Alu 4 309 -3 248 108 0 0 chr3 103573951 103573988 -114463170 + LTR8A LTR ERV1 1 37 -690 2150 158 90 89 chr3 103574200 103574787 -114462371 + LTR18B LTR ERVL 27 614 0 370 232 13 0 chr3 103574812 103574915 -114462243 + LTR8 LTR ERV1 236 353 -374 23 92 0 0 chr3 103575652 103575717 -114461441 + AT_rich Low_complexity Low_complexity 1 65 0 38 68 0 0 chr3 103576151 103576224 -114460934 + AT_rich Low_complexity Low_complexity 1 73 0 223 329 45 49 chr3 103577191 103577437 -114459721 + L2 LINE L2 1875 2119 -1195 2338 156 96 6 chr3 103577931 103578387 -114458771 - L1PA15 LINE L1 0 6165 5677 2602 233 8 2 chr3 103578390 103579018 -114458140 + L1P LINE L1 4758 5389 -757 5622 141 23 11 chr3 103579270 103580182 -114456976 + MER49 LTR ERV1 1 923 0 319 240 21 10 chr3 103582736 103582832 -114454326 + (TA)n Simple_repeat Simple_repeat 2 98 0 21824 183 26 15 chr3 103583221 103585740 -114451418 - L1PA11 LINE L1 -10 7602 5112 2068 143 0 3 chr3 103585740 103586047 -114451111 - AluSg SINE Alu 0 310 5 21824 183 26 15 chr3 103586047 103590251 -114446907 - L1PA11 LINE L1 -2500 5112 1 24 67 0 0 chr3 103590548 103590593 -114446565 + AT_rich Low_complexity Low_complexity 1 45 0 228 232 0 0 chr3 103590725 103590781 -114446377 - L1ME LINE L1 -317 5849 5794 24 67 0 0 chr3 103591312 103591357 -114445801 + AT_rich Low_complexity Low_complexity 1 45 0 312 27 0 0 chr3 103591526 103591563 -114445595 + (TC)n Simple_repeat Simple_repeat 2 38 0 246 62 0 0 chr3 103591562 103591594 -114445564 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 * 7529 38 0 0 chr3 103591988 103593065 -114444093 + L1PA3 LINE L1 5078 6154 -1 210 37 0 0 chr3 103593069 103593096 -114444062 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 21522 176 38 33 chr3 103593167 103593265 -114443893 + L1MA3 LINE L1 16 112 -7612 2392 93 0 6 chr3 103593265 103593577 -114443581 + AluY SINE Alu 1 310 -1 21522 176 38 33 chr3 103593577 103601138 -114436020 + L1MA3 LINE L1 112 7716 -8 21 0 0 0 chr3 103601138 103601159 -114435999 + AT_rich Low_complexity Low_complexity 1 21 0 2297 189 9 43 chr3 103601290 103601751 -114435407 - ERVL LTR ERVL -2604 3160 2716 596 243 8 26 chr3 103601752 103602016 -114435142 + L1MC/D LINE L1 5223 5484 -751 1493 124 71 124 chr3 103602748 103602910 -114434248 - AluSx SINE Alu -1 311 173 2316 99 0 3 chr3 103602910 103603213 -114433945 - AluSp SINE Alu -7 306 5 1493 124 71 124 chr3 103603213 103603372 -114433786 - AluSx SINE Alu -139 173 7 293 258 269 0 chr3 103603387 103603480 -114433678 + MER5A DNA MER1_type 70 187 -2 21 0 0 0 chr3 103604483 103604504 -114432654 + AT_rich Low_complexity Low_complexity 1 21 0 201 74 0 0 chr3 103604942 103604969 -114432189 + (TTTAA)n Simple_repeat Simple_repeat 1 27 0 312 292 12 31 chr3 103605440 103605601 -114431557 + T-rich Low_complexity Low_complexity 2 159 0 4055 105 2 26 chr3 103605639 103606265 -114430893 - L1PA13 LINE L1 -19 6144 5534 239 326 120 37 chr3 103606393 103606635 -114430523 + L2 LINE L2 1876 2137 -1177 224 305 84 71 chr3 103607531 103607685 -114429473 + MER5B DNA MER1_type 13 168 -10 * 235 325 51 56 chr3 103607676 103607873 -114429285 + L2 LINE L2 2601 2796 -518 7347 102 3 23 chr3 103608056 103609135 -114428023 - MER11C LTR ERVK -14 1057 1 874 136 9 0 chr3 103611177 103611331 -114425827 + L1PA13 LINE L1 5791 5948 -215 1300 151 5 9 chr3 103611374 103611586 -114425572 + AluJo SINE Alu 82 292 -20 25 0 0 0 chr3 103611598 103611623 -114425535 + AT_rich Low_complexity Low_complexity 1 25 0 6442 140 38 36 chr3 103612038 103613265 -114423893 + Tigger3b DNA MER2_type 2 1231 0 227 186 0 0 chr3 103613312 103613355 -114423803 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 1538 179 32 61 chr3 103613406 103613580 -114423578 + MER2 DNA MER2_type 9 170 -175 3597 196 37 53 chr3 103613580 103614550 -114422608 - LTR5 LTR ERVK -14 955 1 1538 179 32 61 chr3 103614550 103614721 -114422437 + MER2 DNA MER2_type 170 344 -1 35 0 0 0 chr3 103615500 103615535 -114421623 + AT_rich Low_complexity Low_complexity 1 35 0 261 0 0 0 chr3 103615825 103615854 -114421304 + (T)n Simple_repeat Simple_repeat 1 29 0 24 32 0 0 chr3 103616102 103616133 -114421025 + AT_rich Low_complexity Low_complexity 1 31 0 1949 160 0 3 chr3 103667039 103667333 -114369825 + AluSx SINE Alu 4 296 -16 393 123 0 0 chr3 103667334 103667399 -114369759 + (TA)n Simple_repeat Simple_repeat 2 66 0 208 235 20 0 chr3 103667404 103667455 -114369703 - L2 LINE L2 -2092 1222 1171 1005 230 16 129 chr3 103668708 103669203 -114367955 - MER31A-int LTR ERV1 -4446 490 52 1574 181 46 41 chr3 103669288 103669731 -114367427 - MER31A LTR ERV1 0 543 1 324 278 83 19 chr3 103669912 103670020 -114367138 - MIR SINE MIR -136 126 12 217 197 33 0 chr3 103670308 103670369 -114366789 + (TA)n Simple_repeat Simple_repeat 1 63 0 772 298 64 22 chr3 103670398 103671022 -114366136 - L1MC4 LINE L1 -205 7837 7188 3647 211 23 7 chr3 103671116 103671996 -114365162 - L1MC3 LINE L1 -27 7758 6865 26 30 0 0 chr3 103672424 103672457 -114364701 + GC_rich Low_complexity Low_complexity 1 33 0 672 136 36 14 chr3 103672601 103672741 -114364417 + L1PA13 LINE L1 6019 6161 -2 2093 59 9 81 chr3 103673281 103673638 -114363520 - AluY SINE Alu 0 311 1 204 40 0 0 chr3 103673752 103673777 -114363381 + (CTAG)n Simple_repeat Simple_repeat 3 27 0 2041 122 0 3 chr3 103673872 103674166 -114362992 - AluSc SINE Alu -16 293 1 208 350 108 19 chr3 103674664 103674821 -114362337 - L2 LINE L2 -238 3034 2864 195 100 20 40 chr3 103675110 103675160 -114361998 + (TTTC)n Simple_repeat Simple_repeat 1 49 0 259 300 33 22 chr3 103675194 103675284 -114361874 - L2 LINE L2 -14 3299 3209 695 284 23 58 chr3 103675427 103675684 -114361474 + MIR SINE MIR 5 252 -10 362 324 37 44 chr3 103675751 103676079 -114361079 - L2 LINE L2 -223 3049 2698 543 111 12 0 chr3 103676085 103676166 -114360992 + AluS SINE Alu 1 82 -230 195 284 179 63 chr3 103676173 103676305 -114360853 - L2 LINE L2 -858 2456 2341 1573 176 32 14 chr3 103676305 103676589 -114360569 - AluJo SINE Alu -12 300 12 195 284 179 63 chr3 103676589 103676749 -114360409 - L2 LINE L2 -973 2341 2201 1237 173 73 3 chr3 103676749 103677050 -114360108 - MER33 DNA MER1_type 0 324 3 195 284 179 63 chr3 103677050 103677185 -114359973 - L2 LINE L2 -1113 2201 1978 222 311 198 35 chr3 103677245 103677528 -114359630 + L2 LINE L2 1682 2010 -1304 447 339 67 47 chr3 103677883 103678244 -114358914 - L2 LINE L2 0 3272 2746 2348 47 40 7 chr3 103678765 103679065 -114358093 - AluY SINE Alu -1 310 1 2316 199 21 2 chr3 103679109 103679892 -114357266 - L1M4 LINE L1 -457 5727 4927 1167 275 39 10 chr3 103679894 103680203 -114356955 - L1M4b LINE L1 -6160 699 382 1007 253 57 59 chr3 103680348 103680872 -114356286 + PABL_B LTR ERV1 1 667 0 450 314 85 5 chr3 103681130 103681318 -114355840 + LTR33A LTR ERVL 61 263 -260 235 300 33 8 chr3 103681366 103681486 -114355672 + LTR33A LTR ERVL 393 515 -8 210 37 0 0 chr3 103681525 103681552 -114355606 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 247 219 95 9 chr3 103681626 103681731 -114355427 + L1MB3 LINE L1 5266 5379 -2616 310 250 38 0 chr3 103682752 103682832 -114354326 + L2 LINE L2 3229 3311 -2 23 33 0 0 chr3 103683705 103683735 -114353423 + AT_rich Low_complexity Low_complexity 1 30 0 2246 120 6 0 chr3 103684994 103685328 -114351830 - L1PA15 LINE L1 -119 6046 5711 2395 157 57 13 chr3 103685539 103686016 -114351142 + L1MB3 LINE L1 5684 6181 -2 853 163 36 24 chr3 103686612 103686778 -114350380 + MLT1G LTR MaLR 423 590 0 304 294 29 15 chr3 103687407 103687543 -114349615 + GA-rich Low_complexity Low_complexity 1 138 0 824 313 113 37 chr3 103688432 103689253 -114347905 + L1ME3A LINE L1 2110 3014 -3132 2850 10 0 0 chr3 103689253 103689564 -114347594 - AluYa5 SINE Alu 0 311 1 824 313 113 37 chr3 103689564 103689689 -114347469 + L1ME3A LINE L1 3014 3128 -3018 403 256 23 23 chr3 103689696 103689825 -114347333 + L1ME3A LINE L1 4073 4201 -1945 433 281 32 32 chr3 103689836 103690057 -114347101 + L1ME3A LINE L1 5730 5950 -220 317 254 68 79 chr3 103690428 103690605 -114346553 - L1ME4a LINE L1 -17 6104 5930 6967 52 5 5 chr3 103690925 103691813 -114345345 + L1PA6 LINE L1 5263 6150 -4 528 263 109 46 chr3 103692142 103692682 -114344476 + L1ME4a LINE L1 5548 6121 0 1918 135 10 26 chr3 103693439 103693743 -114343415 - AluSx SINE Alu -13 299 1 521 117 0 0 chr3 103694781 103694858 -114342300 + L1PA10 LINE L1 6092 6168 0 2204 102 13 3 chr3 103695273 103695577 -114341581 - AluSp SINE Alu -6 307 1 382 320 98 52 chr3 103695963 103696269 -114340889 - L2 LINE L2 -97 3216 2897 1116 202 20 28 chr3 103696408 103696660 -114340498 - MLT1D LTR MaLR 0 505 256 22 0 0 0 chr3 103696713 103696735 -114340423 + AT_rich Low_complexity Low_complexity 1 22 0 342 212 119 19 chr3 103696792 103696927 -114340231 - MLT1D LTR MaLR -435 70 3 478 261 175 55 chr3 103697017 103697274 -114339884 - L2 LINE L2 -899 2415 2128 228 172 0 0 chr3 103697525 103697583 -114339575 + A-rich Low_complexity Low_complexity 1 58 0 36 82 0 0 chr3 103697674 103697759 -114339399 + AT_rich Low_complexity Low_complexity 1 85 0 37 0 0 0 chr3 103698312 103698349 -114338809 + AT_rich Low_complexity Low_complexity 1 37 0 504 273 47 0 chr3 103698789 103698939 -114338219 - LTR16C LTR ERVL -2 489 333 1917 137 0 7 chr3 103699056 103699348 -114337810 - AluSx SINE Alu -22 290 1 883 106 28 0 chr3 103699451 103699593 -114337565 + L1P LINE L1 5151 5296 -850 3690 167 46 5 chr3 103699805 103700453 -114336705 + Tigger1 DNA MER2_type 2 676 -1742 * 6680 143 20 15 chr3 103700450 103701581 -114335577 + Tigger1 DNA MER2_type 1202 2338 -80 4871 85 21 11 chr3 103701925 103702636 -114334522 - L1PA8 LINE L1 -6 6166 5394 9700 22 1 0 chr3 103702743 103704031 -114333127 + L1P1 LINE L1 4230 5519 -636 4507 154 20 6 chr3 103704148 103705359 -114331799 + L1P4 LINE L1 4508 5733 -441 723 185 38 0 chr3 103705478 103705635 -114331523 - Tigger1 DNA MER2_type -2176 242 80 3695 166 61 3 chr3 103705635 103706573 -114330585 - L1M2 LINE L1 -3324 3524 2513 713 175 0 29 chr3 103708231 103708368 -114328790 + FLAM_C SINE Alu 1 133 0 2170 104 3 7 chr3 103708377 103708674 -114328484 + AluSp SINE Alu 1 296 -17 259 197 16 0 chr3 103708685 103708746 -114328412 + (TA)n Simple_repeat Simple_repeat 2 63 0 845 227 151 37 chr3 103709773 103710240 -114326918 + L1ME4a LINE L1 5601 6120 -1 32 57 0 0 chr3 103710765 103710818 -114326340 + AT_rich Low_complexity Low_complexity 1 53 0 2272 238 111 34 chr3 103711288 103711958 -114325200 + MSTD-int LTR MaLR 893 1731 -4 1548 173 153 28 chr3 103711962 103712314 -114324844 + MSTD LTR MaLR 1 396 0 494 275 149 18 chr3 103712460 103712682 -114324476 + MIR SINE MIR 6 256 -6 612 154 0 18 chr3 103713288 103713398 -114323760 + AluSg/x SINE Alu 192 299 -10 347 220 14 78 chr3 103714030 103714171 -114322987 + L1ME4a LINE L1 5979 6110 -11 64 35 0 0 chr3 103714217 103714302 -114322856 + AT_rich Low_complexity Low_complexity 1 85 0 21 57 0 0 chr3 103714561 103714596 -114322562 + AT_rich Low_complexity Low_complexity 1 35 0 217 291 23 23 chr3 103715002 103715088 -114322070 - MIR SINE MIR -6 256 171 2116 89 0 34 chr3 103715665 103715994 -114321164 + AluSq SINE Alu 1 319 0 680 175 24 8 chr3 103715996 103716122 -114321036 + FLAM_A SINE Alu 1 128 -5 464 296 63 42 chr3 103716152 103716341 -114320817 + MIR SINE MIR 1 193 -69 21 82 0 0 chr3 103716423 103716472 -114320686 + AT_rich Low_complexity Low_complexity 1 49 0 263 269 90 0 chr3 103717932 103717999 -114319159 - MIR3 SINE MIR -32 176 104 192 125 0 0 chr3 103718704 103718736 -114318422 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 297 267 0 30 chr3 103718777 103718878 -114318280 + MLT1K LTR MaLR 475 572 -16 619 176 222 0 chr3 103719317 103719470 -114317688 + MER53 DNA DNA 2 188 -1 253 297 47 94 chr3 103720609 103720801 -114316357 + MIR3 SINE MIR 5 187 -21 2376 178 38 2 chr3 103721119 103721564 -114315594 - LOR1b LTR ERV1 0 461 1 228 35 0 0 chr3 103721620 103721649 -114315509 + (TC)n Simple_repeat Simple_repeat 2 30 0 201 250 29 88 chr3 103723390 103723458 -114313700 - L2 LINE L2 0 3272 3209 2432 80 3 0 chr3 103724286 103724597 -114312561 + AluSp SINE Alu 1 312 -1 268 193 138 18 chr3 103725793 103725902 -114311256 - MIR SINE MIR -37 225 104 349 331 130 14 chr3 103726001 103726233 -114310925 - MIR SINE MIR -3 259 3 1242 130 45 0 chr3 103726427 103726627 -114310531 - L1MC1 LINE L1 -167 6166 5958 1489 86 48 0 chr3 103726864 103727074 -114310084 - L1PA10 LINE L1 -4 6164 5945 1004 228 0 0 chr3 103727292 103727476 -114309682 - MER63A DNA MER1_type 0 210 27 6187 106 12 2 chr3 103727618 103728991 -114308167 + L1PA10 LINE L1 4787 6168 0 383 309 133 63 chr3 103729106 103729518 -114307640 + L1MC/D LINE L1 5254 5707 -2101 1675 239 102 20 chr3 103729518 103730017 -114307141 - MLT1F LTR MaLR -2 540 1 383 309 133 63 chr3 103730017 103730092 -114307066 + L1MC/D LINE L1 5707 5775 -2033 32 75 0 0 chr3 103730119 103730186 -114306972 + AT_rich Low_complexity Low_complexity 1 67 0 21 0 0 0 chr3 103730267 103730288 -114306870 + AT_rich Low_complexity Low_complexity 1 21 0 272 260 26 39 chr3 103731285 103731362 -114305796 - MIR SINE MIR -105 157 82 564 324 17 11 chr3 103731499 103731678 -114305480 + L3 LINE CR1 1320 1499 -78 266 26 53 0 chr3 103731747 103731785 -114305373 + (TTTC)n Simple_repeat Simple_repeat 1 40 0 2283 110 10 0 chr3 103731790 103732098 -114305060 - AluSx SINE Alu 0 312 2 430 257 0 9 chr3 103732192 103732305 -114304853 - MIR SINE MIR 0 262 151 2130 127 0 16 chr3 103732849 103733164 -114303994 - AluSx SINE Alu -2 310 1 290 317 122 0 chr3 103733202 103733325 -114303833 + MIR SINE MIR 92 229 -33 272 350 100 12 chr3 103734203 103734363 -114302795 - MIR SINE MIR -50 212 39 1045 176 34 36 chr3 103735241 103735597 -114301561 + MLT2D LTR ERVL 3 414 0 21 0 0 0 chr3 103736197 103736218 -114300940 + AT_rich Low_complexity Low_complexity 1 21 0 17135 95 24 8 chr3 103736464 103739001 -114298157 - L1PBa LINE L1 -982 5880 3302 15424 127 35 12 chr3 103739001 103741512 -114295646 - L1PBa LINE L1 -4289 2574 5 2094 148 0 0 chr3 103741861 103742172 -114294986 - AluSx SINE Alu -1 311 1 46 33 0 0 chr3 103742521 103742581 -114294577 + AT_rich Low_complexity Low_complexity 1 60 0 24 0 0 0 chr3 103742935 103742959 -114294199 + AT_rich Low_complexity Low_complexity 1 24 0 204 273 30 30 chr3 103743453 103743519 -114293639 - L2 LINE L2 0 3272 3207 442 314 62 10 chr3 103743936 103744130 -114293028 - LTR16A LTR ERVL -7 443 240 27 81 0 0 chr3 103744309 103744371 -114292787 + AT_rich Low_complexity Low_complexity 1 62 0 1080 196 21 61 chr3 103744400 103744680 -114292478 + L1MA8 LINE L1 9 277 -6753 2192 269 106 30 chr3 103744689 103746946 -114290212 + L1MA8 LINE L1 1028 3104 -4002 11252 200 47 14 chr3 103746961 103750815 -114286343 + L1MA8 LINE L1 3276 7247 -4 517 298 102 28 chr3 103752800 103753489 -114283669 - L1ME4a LINE L1 -1 6120 5381 1689 163 0 34 chr3 103753796 103754091 -114283067 - AluJb SINE Alu -23 289 5 2549 168 42 0 chr3 103754292 103754769 -114282389 - L1MB3 LINE L1 -3 6180 5684 373 241 24 0 chr3 103757102 103757185 -114279973 - L2 LINE L2 -2 3270 3186 540 313 83 9 chr3 103757627 103757857 -114279301 - MIR SINE MIR -4 258 12 39 0 0 0 chr3 103757972 103758011 -114279147 + AT_rich Low_complexity Low_complexity 1 39 0 30 0 0 0 chr3 103760939 103760969 -114276189 + AT_rich Low_complexity Low_complexity 1 30 0 2233 111 36 30 chr3 103761715 103762077 -114275081 - THE1B LTR MaLR 0 364 1 215 289 172 55 chr3 103762548 103762676 -114274482 - L2 LINE L2 0 3313 3171 1667 157 67 0 chr3 103763264 103763532 -114273626 - AluJo SINE Alu -24 288 3 646 163 96 37 chr3 103764044 103764179 -114272979 - FLAM_C SINE Alu 0 143 1 931 240 126 47 chr3 103764540 103765065 -114272093 - MLT1G1 LTR MaLR 0 595 1 2367 80 0 0 chr3 103765510 103765811 -114271347 - AluY SINE Alu -10 301 1 195 296 0 28 chr3 103766291 103766362 -114270796 - L2 LINE L2 -18 3254 3186 469 368 109 32 chr3 103766659 103767244 -114269914 - L2 LINE L2 -446 2868 2239 479 330 131 0 chr3 103767258 103767464 -114269694 - MIR SINE MIR 0 262 30 2070 185 48 21 chr3 103767730 103768235 -114268923 - MLT2A2 LTR ERVL -8 546 1 984 221 72 75 chr3 103768576 103768938 -114268220 + MLT1A1 LTR MaLR 1 361 -4 324 272 80 8 chr3 103769311 103769436 -114267722 - MIR SINE MIR 0 262 129 602 248 102 0 chr3 103769938 103770095 -114267063 + MER5B DNA MER1_type 4 176 -2 273 269 274 39 chr3 103770135 103770343 -114266815 - MIR SINE MIR -4 258 2 2153 116 3 0 chr3 103771511 103771804 -114265354 + AluSx SINE Alu 1 294 -18 2083 125 3 3 chr3 103772393 103772690 -114264468 + AluSp SINE Alu 1 297 -16 297 163 0 0 chr3 103772784 103772833 -114264325 - MER116 DNA Mariner -31 49 1 25 0 0 0 chr3 103773601 103773626 -114263532 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr3 103774716 103774739 -114262419 + AT_rich Low_complexity Low_complexity 1 23 0 283 202 124 34 chr3 103775502 103775591 -114261567 - MIR SINE MIR -10 252 156 1105 152 30 2 chr3 103775591 103775871 -114261287 - MER2 DNA MER2_type 0 345 14 447 217 67 25 chr3 103775875 103775995 -114261163 - MIR SINE MIR -104 158 34 656 320 216 26 chr3 103776178 103776905 -114260253 - L3 LINE CR1 -148 1429 565 1240 272 94 60 chr3 103777396 103778313 -114258845 + L2 LINE L2 2350 3311 -2 29 60 0 0 chr3 103781069 103781119 -114256039 + GC_rich Low_complexity Low_complexity 1 50 0 230 289 89 44 chr3 103781276 103781411 -114255747 - MIR3 SINE MIR -65 143 3 436 213 138 54 chr3 103781558 103781798 -114255360 - MER113 DNA MER1_type? -258 263 4 2361 65 3 3 chr3 103782413 103782704 -114254454 + AluY SINE Alu 2 292 -19 413 300 72 28 chr3 103782888 103783068 -114254090 + MIR SINE MIR 75 262 0 22 0 0 0 chr3 103784321 103784343 -114252815 + AT_rich Low_complexity Low_complexity 1 22 0 277 306 90 0 chr3 103784755 103784866 -114252292 + MIR3 SINE MIR 88 208 0 25 31 0 0 chr3 103785228 103785260 -114251898 + AT_rich Low_complexity Low_complexity 1 32 0 241 353 71 12 chr3 103785571 103785656 -114251502 - L2 LINE L2 -10 3262 3173 545 292 26 7 chr3 103786562 103786716 -114250442 - MER5A DNA MER1_type 0 189 33 1620 164 42 42 chr3 103788295 103788605 -114248553 + AluJb SINE Alu 1 310 -2 22 0 0 0 chr3 103792760 103792782 -114244376 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr3 103793246 103793278 -114243880 + AT_rich Low_complexity Low_complexity 1 32 0 2163 113 0 3 chr3 103793751 103794058 -114243100 + AluSg SINE Alu 1 306 0 183 100 0 0 chr3 103794113 103794143 -114243015 + (CATATA)n Simple_repeat Simple_repeat 5 34 0 2621 35 0 10 chr3 103795986 103796297 -114240861 - AluY SINE Alu -3 308 1 22 0 0 0 chr3 103796515 103796537 -114240621 + AT_rich Low_complexity Low_complexity 1 22 0 296 310 43 35 chr3 103797843 103798114 -114239044 + MLT1G LTR MaLR 54 397 -193 1700 192 109 12 chr3 103798711 103799196 -114237962 - L1ME1 LINE L1 -5 6161 5630 2125 143 54 42 chr3 103799216 103799644 -114237514 + Tigger2a DNA MER2_type 2 434 0 26 64 0 0 chr3 103799685 103799732 -114237426 + AT_rich Low_complexity Low_complexity 1 47 0 2475 81 3 0 chr3 103802741 103803048 -114234110 - AluY SINE Alu -3 308 1 22 0 0 0 chr3 103803671 103803693 -114233465 + AT_rich Low_complexity Low_complexity 1 22 0 194 362 21 11 chr3 103805119 103805213 -114231945 + MIR SINE MIR 21 115 -147 2248 85 0 0 chr3 103806122 103806429 -114230729 - AluY SINE Alu 0 307 1 206 325 139 13 chr3 103806585 103806736 -114230422 + MIR3 SINE MIR 34 203 -5 2296 93 0 16 chr3 103806920 103807233 -114229925 + AluSq SINE Alu 1 308 -5 1312 121 22 30 chr3 103807259 103807491 -114229667 - THE1C LTR MaLR 0 375 146 802 71 0 0 chr3 103807602 103807700 -114229458 - AluY SINE Alu -213 98 1 206 325 139 13 chr3 103807856 103808007 -114229151 + MIR3 SINE MIR 34 203 -5 2484 45 0 0 chr3 103808191 103808512 -114228646 + AluY SINE Alu 1 311 0 2299 130 87 0 chr3 103808887 103809279 -114227879 - MSTC LTR MaLR -2 426 1 23 54 0 0 chr3 103810049 103810086 -114227072 + AT_rich Low_complexity Low_complexity 1 37 0 2246 93 10 13 chr3 103810570 103810906 -114226252 + AluSq SINE Alu 1 313 0 352 253 219 7 chr3 103810975 103811047 -114226111 + MER5B DNA MER1_type 2 57 -121 297 0 0 0 chr3 103811047 103811080 -114226078 + (CA)n Simple_repeat Simple_repeat 2 34 0 352 253 219 7 chr3 103811080 103811153 -114226005 + MER5B DNA MER1_type 57 178 0 2185 105 0 3 chr3 103811683 103811993 -114225165 - AluSx SINE Alu 0 309 1 22 0 0 0 chr3 103812474 103812496 -114224662 + AT_rich Low_complexity Low_complexity 1 22 0 470 282 74 14 chr3 103813326 103813511 -114223647 - MIR3 SINE MIR -9 253 97 327 85 0 0 chr3 103813511 103813558 -114223600 + (TA)n Simple_repeat Simple_repeat 1 47 0 470 282 74 14 chr3 103813558 103813649 -114223509 - MIR3 SINE MIR -165 97 13 412 277 107 103 chr3 103814429 103815122 -114222036 + L1M2 LINE L1 415 1376 -5473 2280 83 17 3 chr3 103815737 103816037 -114221121 + AluSx SINE Alu 1 304 -8 252 0 0 0 chr3 103817635 103817663 -114219495 + (CA)n Simple_repeat Simple_repeat 2 29 0 424 241 145 12 chr3 103818220 103818386 -114218772 + MLT1L LTR MaLR 348 535 -80 284 247 151 48 chr3 103820323 103820469 -114216689 - MIR SINE MIR -12 250 90 2005 159 52 85 chr3 103820705 103820810 -114216348 - Tigger6a DNA MER2_type -540 1057 950 2134 116 7 0 chr3 103820810 103821095 -114216063 - AluSx SINE Alu -25 287 1 2005 159 52 85 chr3 103821095 103821538 -114215620 - Tigger6a DNA MER2_type -647 950 527 1544 185 62 75 chr3 103821538 103821954 -114215204 + MLT2D LTR ERVL 1 411 -3 * 2485 182 14 40 chr3 103821954 103822497 -114214661 - Tigger6a DNA MER2_type -553 530 2 589 278 62 91 chr3 103822734 103823086 -114214072 + MLT1J LTR MaLR 1 342 -169 692 242 157 14 chr3 103823926 103824149 -114213009 + MIR SINE MIR 8 262 0 1488 174 11 19 chr3 103824248 103824518 -114212640 + AluJo SINE Alu 1 268 -44 189 0 0 0 chr3 103824526 103824547 -114212611 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 3074 32 11 3 chr3 103825590 103825968 -114211190 - L1PA3 LINE L1 -1 6154 5774 198 283 0 0 chr3 103826317 103826363 -114210795 - MIR SINE MIR -57 151 106 1739 110 4 0 chr3 103826478 103826714 -114210444 - AluSp SINE Alu -76 237 1 250 376 54 0 chr3 103827170 103827319 -114209839 + MIR SINE MIR 100 256 -6 2300 82 7 3 chr3 103827367 103827660 -114209498 - AluSc SINE Alu -15 294 1 1891 142 13 25 chr3 103828188 103828505 -114208653 - AluSq SINE Alu 0 313 1 294 323 106 43 chr3 103828961 103829122 -114208036 - MER5B DNA MER1_type -7 171 1 412 252 252 0 chr3 103829230 103829369 -114207789 - MER5A DNA MER1_type 0 189 16 289 250 75 12 chr3 103830339 103830419 -114206739 + MIR SINE MIR 61 145 -117 1213 60 18 0 chr3 103830419 103830585 -114206573 - MLT2A1 LTR ERVL 0 444 276 17574 79 19 2 chr3 103830587 103833020 -114204138 - HERVL-A1 LTR ERVL -3181 2473 1 3307 92 0 7 chr3 103833020 103833467 -114203691 - MLT2A1 LTR ERVL 0 444 1 1905 122 4 15 chr3 103833661 103833931 -114203227 - AluSx SINE Alu -23 289 23 340 308 143 37 chr3 103834749 103834867 -114202291 + L1ME2 LINE L1 4013 4117 -2029 1044 181 68 5 chr3 103834867 103835072 -114202086 - MER20 DNA MER1_type 0 219 2 340 308 143 37 chr3 103835072 103835359 -114201799 + L1ME2 LINE L1 4117 4461 -1685 2182 211 69 31 chr3 103835547 103835949 -114201209 + L1ME2 LINE L1 5380 5818 -346 2033 146 30 30 chr3 103835949 103835996 -114201162 - THE1B LTR MaLR 0 364 318 2236 122 0 0 chr3 103835996 103836290 -114200868 + AluSx SINE Alu 5 298 -14 2033 146 30 30 chr3 103836290 103836606 -114200552 - THE1B LTR MaLR -45 319 1 2182 211 69 31 chr3 103836606 103836856 -114200302 + L1ME2 LINE L1 5818 6057 -107 272 30 0 0 chr3 103837192 103837225 -114199933 - U2 snRNA snRNA -155 33 1 2681 239 27 41 chr3 103837406 103838526 -114198632 + L1MEc LINE L1 1493 2943 -3272 1312 89 0 6 chr3 103838526 103838694 -114198464 + AluSg SINE Alu 1 167 -143 180 0 0 0 chr3 103838868 103838888 -114198270 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2133 108 10 7 chr3 103838888 103839195 -114197963 - L1PB1 LINE L1 -10 6857 6550 24 0 0 0 chr3 103839203 103839227 -114197931 + AT_rich Low_complexity Low_complexity 1 24 0 543 90 0 0 chr3 103839235 103839313 -114197845 + (CA)n Simple_repeat Simple_repeat 2 79 0 14931 151 59 24 chr3 103839313 103843843 -114193315 - L1PB1 LINE L1 -491 6376 1571 2010 135 0 0 chr3 103843843 103844154 -114193004 + AluSx SINE Alu 1 311 0 14931 151 59 24 chr3 103844154 103845780 -114191378 - L1PB1 LINE L1 -5296 1571 3 451 206 32 0 chr3 103845784 103845910 -114191248 + L1MD1 LINE L1 6113 6242 0 848 266 53 15 chr3 103845910 103846304 -114190854 + L1M4 LINE L1 3955 4363 -1783 2414 159 64 21 chr3 103846331 103846848 -114190310 + ERVL-D LTR ERVL 5219 5757 -7 1105 256 4 7 chr3 103846848 103847122 -114190036 + MLT2D LTR ERVL 1 273 -141 364 162 105 48 chr3 103847125 103847230 -114189928 + L1MC2 LINE L1 6234 6344 0 2098 132 14 0 chr3 103847373 103847669 -114189489 - AluSx SINE Alu -12 300 1 25 31 0 0 chr3 103847990 103848022 -114189136 + AT_rich Low_complexity Low_complexity 1 32 0 1335 255 88 41 chr3 103848087 103848679 -114188479 + L1M4 LINE L1 4283 4933 -1213 1697 218 62 44 chr3 103848679 103849175 -114187983 - MLT1D LTR MaLR 0 505 1 1335 255 88 41 chr3 103849175 103849480 -114187678 + L1M4 LINE L1 4933 5222 -924 370 294 98 46 chr3 103849649 103849843 -114187315 - MIR SINE MIR -2 260 57 344 261 0 57 chr3 103849815 103849903 -114187255 + L2 LINE L2 3198 3280 -33 * 505 289 64 12 chr3 103851352 103851525 -114185633 + MIR SINE MIR 20 201 -61 299 290 103 21 chr3 103852562 103852707 -114184451 - L3 LINE CR1 -595 982 826 1636 121 36 29 chr3 103852707 103852870 -114184288 - AluY SINE Alu -22 289 122 459 0 0 0 chr3 103852870 103852921 -114184237 + (TA)n Simple_repeat Simple_repeat 1 51 0 1636 121 36 29 chr3 103852921 103853037 -114184121 - AluY SINE Alu -189 122 8 633 275 56 6 chr3 103853493 103853671 -114183487 + MER5A DNA MER1_type 3 189 0 638 276 26 0 chr3 103854181 103854333 -114182825 - MER5B DNA MER1_type -1 177 22 495 258 205 7 chr3 103854676 103854827 -114182331 - MER5A DNA MER1_type -1 188 8 190 380 40 0 chr3 103856727 103856827 -114180331 + L2 LINE L2 3205 3308 -5 440 176 308 15 chr3 103857057 103857203 -114179955 - MER5A DNA MER1_type 0 189 1 1975 152 123 8 chr3 103857783 103858164 -114178994 + MSTB LTR MaLR 2 426 0 2394 93 0 6 chr3 103858250 103858563 -114178595 + AluSq SINE Alu 1 311 -2 23 33 0 0 chr3 103858674 103858704 -114178454 + AT_rich Low_complexity Low_complexity 1 30 0 1803 171 3 7 chr3 103858782 103859087 -114178071 + AluSx SINE Alu 1 304 -8 245 288 17 0 chr3 103859558 103859617 -114177541 + L3 LINE CR1 456 515 -1062 347 250 60 30 chr3 103860790 103860958 -114176200 - HAL1 LINE L1 -3 2504 2332 6734 49 10 1 chr3 103861130 103862006 -114175152 - L1PA6 LINE L1 -8 6146 5263 317 254 68 79 chr3 103862327 103862504 -114174654 + L1ME4a LINE L1 5930 6104 -17 315 280 46 32 chr3 103862875 103863093 -114174065 - L1ME3A LINE L1 -220 6186 5966 371 256 23 23 chr3 103863104 103863233 -114173925 - L1ME3A LINE L1 -1945 4437 4309 707 339 73 26 chr3 103863240 103863365 -114173793 - L1ME3A LINE L1 -3016 3366 3248 2837 10 0 0 chr3 103863365 103863676 -114173482 + AluYa5 SINE Alu 1 311 0 707 339 73 26 chr3 103863676 103864349 -114172809 - L1ME3A LINE L1 -3134 3248 2507 304 294 29 15 chr3 103865389 103865525 -114171633 + CT-rich Low_complexity Low_complexity 1 138 0 784 175 36 24 chr3 103866155 103866321 -114170837 - MLT1G LTR MaLR 0 590 423 2242 99 10 0 chr3 103866536 103866838 -114170320 - AluSx SINE Alu -7 305 1 1148 116 4 17 chr3 103867419 103867745 -114169413 - L1M4c LINE L1 -3939 2444 1643 10920 102 4 9 chr3 103867752 103870231 -114166927 - L1PA7 LINE L1 -8 6146 3682 292 179 12 83 chr3 103870663 103870831 -114166327 + (TA)n Simple_repeat Simple_repeat 1 156 0 181 85 0 85 chr3 103870876 103870935 -114166223 + (TA)n Simple_repeat Simple_repeat 1 54 0 264 226 107 58 chr3 103870940 103871147 -114166011 - L1MCa LINE L1 -4271 2111 1979 1382 259 36 38 chr3 103871147 103871812 -114165346 - L1MCa LINE L1 -4675 1709 1046 1163 117 6 6 chr3 104073455 104073626 -113963532 - AluSp SINE Alu -141 172 2 227 304 32 32 chr3 104074153 104074311 -113962847 + L1ME2 LINE L1 1044 1201 -5341 304 256 60 43 chr3 104074372 104074606 -113962552 + L1ME2 LINE L1 1418 1655 -4979 454 272 120 57 chr3 104074641 104074924 -113962234 + L1ME2 LINE L1 1487 1787 -4857 361 325 46 4 chr3 104074997 104075234 -113961924 + L1ME2 LINE L1 2001 2247 -4578 863 261 89 55 chr3 104075247 104075750 -113961408 + L1ME2 LINE L1 2305 2789 -3855 1593 212 0 3 chr3 104075750 104076033 -113961125 + AluJb SINE Alu 14 295 -17 863 261 89 55 chr3 104076033 104076545 -113960613 + L1ME2 LINE L1 2789 3338 -3306 2490 204 119 29 chr3 104076559 104077661 -113959497 + L1ME2 LINE L1 5453 6653 -9 * 3108 279 75 39 chr3 104077657 104078784 -113958374 + L1ME3A LINE L1 3297 4382 -2262 6195 88 11 1 chr3 104078784 104080072 -113957086 + L1PA12 LINE L1 4856 6167 -1 3108 279 75 39 chr3 104080072 104080548 -113956610 + L1ME3A LINE L1 4382 4839 -1805 1924 141 10 7 chr3 104080548 104080878 -113956280 + AluSx SINE Alu 1 312 0 3108 279 75 39 chr3 104080878 104081610 -113955548 + L1ME3A LINE L1 4839 5717 -927 1427 263 79 31 chr3 104081616 104082415 -113954743 + L1ME3A LINE L1 5764 6644 -24 298 306 40 16 chr3 104082502 104082626 -113954532 - MIR SINE MIR -55 207 81 24 0 0 0 chr3 104082768 104082792 -113954366 + AT_rich Low_complexity Low_complexity 1 24 0 1702 173 0 47 chr3 104083394 104083712 -113953446 - AluJb SINE Alu -9 303 1 355 302 175 0 chr3 104084573 104084699 -113952459 - MIR SINE MIR -112 150 3 2301 104 3 3 chr3 104085088 104085396 -113951762 + AluSg SINE Alu 1 308 -2 1821 155 27 14 chr3 104085411 104085707 -113951451 + AluSx SINE Alu 1 300 -12 396 174 12 0 chr3 104085734 104085820 -113951338 + L1MB7 LINE L1 6089 6175 -9 2213 121 0 0 chr3 104086391 104086696 -113950462 - AluSc SINE Alu -4 305 1 3590 161 48 4 chr3 104086721 104087326 -113949832 - L1 LINE L1 -1316 4830 4183 2128 150 0 0 chr3 104087326 104087626 -113949532 - AluSx SINE Alu -12 300 1 3590 161 48 4 chr3 104087626 104087783 -113949375 - L1 LINE L1 -1963 4183 4034 621 154 8 43 chr3 104087783 104087900 -113949258 + MER44D DNA MER2_type 1 383 -226 4936 130 84 21 chr3 104087901 104088856 -113948302 + L1MA8 LINE L1 5265 6279 -12 379 314 70 12 chr3 104089564 104089736 -113947422 - MIR SINE MIR -64 198 17 2299 56 0 85 chr3 104089824 104090164 -113946994 + AluY SINE Alu 1 311 0 1912 118 66 0 chr3 104090188 104090475 -113946683 + AluSx SINE Alu 1 306 -6 21 75 0 15 chr3 104090546 104090590 -113946568 + AT_rich Low_complexity Low_complexity 1 45 -21 1199 100 0 0 chr3 104090590 104090760 -113946398 + L1MA1 LINE L1 6129 6298 -4 21 75 0 15 chr3 104090760 104090782 -113946376 + AT_rich Low_complexity Low_complexity 45 66 0 246 280 19 56 chr3 104091108 104091215 -113945943 - MIR3 SINE MIR -19 189 87 1712 154 0 26 chr3 104091372 104091645 -113945513 + AluJo SINE Alu 1 266 -46 539 206 23 6 chr3 104091669 104091844 -113945314 + GA-rich Low_complexity Low_complexity 1 178 0 352 219 85 12 chr3 104096867 104096949 -113940209 - L2 LINE L2 -35 3237 3150 249 107 250 0 chr3 104097180 104097236 -113939922 - L1P LINE L1 -738 5428 5359 642 208 29 72 chr3 104097381 104097453 -113939705 + Charlie2 DNA MER1_type 2593 2667 -195 1710 175 35 3 chr3 104097453 104097739 -113939419 + AluJo SINE Alu 1 295 -17 2071 107 0 0 chr3 104097741 104098021 -113939137 + AluSx SINE Alu 1 280 -32 288 0 0 0 chr3 104098026 104098058 -113939100 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 642 208 29 72 chr3 104098058 104098255 -113938903 + Charlie2 DNA MER1_type 2672 2859 -3 23 0 0 0 chr3 104098414 104098437 -113938721 + AT_rich Low_complexity Low_complexity 1 23 0 2074 250 60 15 chr3 104098674 104099284 -113937874 - MER99 DNA DNA -130 698 54 2194 120 0 0 chr3 104099284 104099585 -113937573 - AluSx SINE Alu -11 301 1 2074 250 60 15 chr3 104099585 104099641 -113937517 - MER99 DNA DNA -774 54 2 25853 95 11 2 chr3 104099903 104104765 -113932393 + L1PA7 LINE L1 1556 6462 -7 310 244 22 22 chr3 104104768 104104858 -113932300 - L1MC4 LINE L1 -1339 6703 6614 269 231 11 22 chr3 104104864 104104955 -113932203 + L1MC4 LINE L1 6615 6704 -1338 308 300 0 11 chr3 104104964 104105054 -113932104 + L1MC4 LINE L1 6616 6704 -1338 230 180 0 16 chr3 104105075 104105136 -113932022 + (TTAA)n Simple_repeat Simple_repeat 4 63 0 578 222 11 11 chr3 104105136 104105316 -113931842 + (TA)n Simple_repeat Simple_repeat 1 180 0 307 311 0 0 chr3 104105348 104105438 -113931720 + L1MC4 LINE L1 6614 6703 -1339 420 138 66 10 chr3 104105439 104105945 -113931213 + (TA)n Simple_repeat Simple_repeat 1 534 0 519 130 56 0 chr3 104105994 104106285 -113930873 + (TA)n Simple_repeat Simple_repeat 1 307 0 23 33 0 0 chr3 104106329 104106359 -113930799 + AT_rich Low_complexity Low_complexity 1 30 0 2013 119 3 13 chr3 104106711 104107021 -113930137 - AluSc SINE Alu -2 307 1 1080 101 47 0 chr3 104107022 104107170 -113929988 - AluSq SINE Alu -21 292 138 198 91 0 0 chr3 104107171 104107204 -113929954 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 249 157 0 0 chr3 104107268 104107302 -113929856 + A-rich Low_complexity Low_complexity 1 37 -14 2116 131 0 13 chr3 104107302 104107642 -113929516 + AluSx SINE Alu 1 312 0 249 157 0 0 chr3 104107642 104107658 -113929500 + A-rich Low_complexity Low_complexity 36 51 0 1660 180 28 7 chr3 104107675 104107964 -113929194 + AluJo SINE Alu 1 295 -17 510 276 95 13 chr3 104108000 104108204 -113928954 - MIR SINE MIR -12 250 31 2420 36 4 0 chr3 104108306 104108614 -113928544 + AluY SINE Alu 1 309 0 214 171 0 0 chr3 104109050 104109085 -113928073 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 1982 138 17 0 chr3 104109188 104109484 -113927674 + AluSx SINE Alu 1 301 -11 408 285 52 35 chr3 104110554 104110726 -113926432 + MIR SINE MIR 18 192 -70 207 0 0 0 chr3 104110825 104110848 -113926310 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1437 145 4 0 chr3 104110858 104111086 -113926072 - MER4A LTR ERV1 0 664 436 1329 236 44 19 chr3 104111250 104111587 -113925571 + MLT2D LTR ERVL 1 334 -63 496 29 29 0 chr3 104111587 104111657 -113925501 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 1329 236 44 19 chr3 104111657 104111698 -113925460 + MLT2D LTR ERVL 334 373 -24 601 244 38 25 chr3 104111912 104112072 -113925086 + MIR SINE MIR 32 193 -69 1965 94 45 28 chr3 104112116 104112404 -113924754 + AluSx SINE Alu 1 293 -19 641 276 47 21 chr3 104113016 104113208 -113923950 - MIR SINE MIR -34 228 32 1382 231 43 18 chr3 104113422 104113463 -113923695 - MLT2D LTR ERVL -24 373 334 599 0 14 0 chr3 104113463 104113534 -113923624 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 1382 231 43 18 chr3 104113534 104113871 -113923287 - MLT2D LTR ERVL -63 334 1 866 247 136 33 chr3 104114464 104114957 -113922201 + Charlie7 DNA MER1_type 29 632 -1980 2091 125 3 0 chr3 104114982 104115270 -113921888 - AluSg SINE Alu -21 289 1 2157 90 0 20 chr3 104115320 104115619 -113921539 + AluSg SINE Alu 5 297 -13 1341 109 0 5 chr3 104115934 104116118 -113921040 + AluSq SINE Alu 1 183 -130 378 0 0 0 chr3 104116267 104116309 -113920849 + (TA)n Simple_repeat Simple_repeat 1 42 0 10562 97 9 13 chr3 104116320 104116755 -113920403 + L1P3 LINE L1 2 437 -6024 315 0 0 0 chr3 104116755 104116790 -113920368 + (TG)n Simple_repeat Simple_repeat 2 36 0 10562 97 9 13 chr3 104116790 104117914 -113919244 + L1P3 LINE L1 437 1555 -4906 673 147 0 0 chr3 104119380 104119482 -113917676 + AluSp/q SINE Alu 195 296 -17 2289 113 0 0 chr3 104119558 104119859 -113917299 - AluSq SINE Alu -12 301 1 2354 95 7 0 chr3 104120265 104120569 -113916589 - AluSg SINE Alu -4 306 1 1678 196 102 52 chr3 104120666 104121145 -113916013 - MLT1D LTR MaLR 0 505 3 1477 161 0 93 chr3 104121808 104121958 -113915200 + AluJb SINE Alu 6 112 -200 2382 109 0 0 chr3 104121958 104122269 -113914889 + AluY SINE Alu 1 311 0 1477 161 0 93 chr3 104122269 104122441 -113914717 + AluJb SINE Alu 112 298 -14 216 97 0 0 chr3 104122441 104122472 -113914686 + (GGGA)n Simple_repeat Simple_repeat 1 31 0 324 228 20 81 chr3 104122605 104122802 -113914356 + L1M4 LINE L1 4496 4680 -1466 2334 88 0 46 chr3 104123778 104124106 -113913052 - AluSp SINE Alu 0 313 1 2369 99 0 0 chr3 104124240 104124543 -113912615 + AluSq SINE Alu 1 303 -10 181 269 34 76 chr3 104124723 104124842 -113912316 - L2 LINE L2 -2533 781 668 550 272 0 0 chr3 104124953 104125067 -113912091 - MER81 DNA DNA 0 114 1 1252 167 28 37 chr3 104125475 104125691 -113911467 + MER20 DNA MER1_type 6 219 0 181 291 139 0 chr3 104126098 104126177 -113910981 - L2 LINE L2 0 3272 3183 182 376 6 62 chr3 104126259 104126421 -113910737 - L2 LINE L2 -224 3048 2896 214 260 0 0 chr3 104127002 104127052 -113910106 + L2 LINE L2 3263 3312 -1 2109 108 3 23 chr3 104127287 104127592 -113909566 + AluSp SINE Alu 1 299 -14 235 261 31 0 chr3 104127614 104127679 -113909479 + MIR SINE MIR 195 261 -1 913 108 39 8 chr3 104128091 104128220 -113908938 + FLAM_C SINE Alu 1 133 0 204 226 0 0 chr3 104128226 104128279 -113908879 + A-rich Low_complexity Low_complexity 1 53 0 5656 60 35 10 chr3 104128294 104128998 -113908160 - LTR30 LTR ERV1 0 722 1 189 132 0 0 chr3 104129230 104129268 -113907890 + (A)n Simple_repeat Simple_repeat 1 38 0 186 118 0 0 chr3 104130116 104130150 -113907008 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 402 273 0 0 chr3 104130424 104130523 -113906635 - MIR SINE MIR -51 211 113 380 233 25 58 chr3 104130590 104130710 -113906448 - MER5A DNA MER1_type -33 156 41 2051 139 10 0 chr3 104130867 104131169 -113905989 - AluSx SINE Alu -7 305 1 339 332 44 28 chr3 104131215 104131407 -113905751 + L2 LINE L2 2012 3109 -204 2306 100 0 0 chr3 104131825 104132124 -113905034 - AluY SINE Alu -12 299 1 230 321 12 48 chr3 104132281 104132365 -113904793 + MIR3 SINE MIR 92 172 -36 1068 299 19 27 chr3 104132623 104132994 -113904164 + L2 LINE L2 2560 2927 -387 1863 158 107 43 chr3 104133007 104133477 -113903681 - LTR10A LTR ERV1 -61 548 1 2252 208 49 31 chr3 104133551 104134099 -113903059 - MER74A LTR ERVL 0 558 1 1117 230 85 72 chr3 104135373 104135571 -113901587 - MLT1L LTR MaLR -113 502 308 1970 153 13 0 chr3 104135571 104135878 -113901280 - AluJb SINE Alu -1 311 1 1117 230 85 72 chr3 104135878 104136162 -113900996 - MLT1L LTR MaLR -307 308 14 1834 136 3 34 chr3 104136409 104136567 -113900591 - AluSx SINE Alu -26 286 140 2192 79 14 17 chr3 104136567 104136903 -113900255 - AluY SINE Alu 0 311 1 1834 136 3 34 chr3 104136903 104137039 -113900119 - AluSx SINE Alu -172 140 1 599 340 46 4 chr3 104137288 104137529 -113899629 - MIR SINE MIR -8 254 4 204 306 0 0 chr3 104137598 104137647 -113899511 + L2 LINE L2 3224 3272 0 2361 108 0 3 chr3 104137744 104138050 -113899108 - AluSx SINE Alu -6 306 2 2072 153 42 125 chr3 104138115 104138643 -113898515 + MLT1D LTR MaLR 22 505 0 2092 108 0 14 chr3 104138901 104139198 -113897960 - AluSq SINE Alu -20 293 1 1268 133 53 67 chr3 104139226 104139451 -113897707 + AluJo SINE Alu 4 225 -87 543 311 15 0 chr3 104139879 104140011 -113897147 + MER5A DNA MER1_type 4 137 -52 1802 192 56 0 chr3 104140341 104140680 -113896478 + MLT1A1 LTR MaLR 1 358 -7 331 271 83 10 chr3 104140685 104140781 -113896377 + L2 LINE L2 3155 3257 -15 2281 114 7 0 chr3 104141230 104141536 -113895622 + AluSx SINE Alu 1 308 -4 895 236 99 0 chr3 104141639 104141759 -113895399 + AluJo SINE Alu 1 108 -204 192 97 0 0 chr3 104141759 104141790 -113895368 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 * 288 111 0 0 chr3 104141789 104141834 -113895324 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 895 236 99 0 chr3 104141790 104141946 -113895212 + AluJo SINE Alu 108 256 -56 233 275 0 0 chr3 104142217 104142286 -113894872 + MER103 DNA DNA 36 104 -62 2183 97 3 0 chr3 104142940 104143229 -113893929 - AluSg SINE Alu -20 290 1 1545 172 26 36 chr3 104143865 104144173 -113892985 + AluJo SINE Alu 1 305 -7 208 143 0 0 chr3 104144186 104144221 -113892937 + (GA)n Simple_repeat Simple_repeat 1 35 0 374 184 0 40 chr3 104144272 104144348 -113892810 + L2 LINE L2 3241 3313 0 194 327 152 23 chr3 104144391 104144608 -113892550 - L2 LINE L2 -830 2484 2240 1354 214 73 48 chr3 104145451 104145806 -113891352 - MLT1A1 LTR MaLR -1 364 1 466 284 50 0 chr3 104146352 104146493 -113890665 + MIR SINE MIR 59 206 -56 314 311 45 40 chr3 104147775 104147803 -113889355 - L1 LINE L1 -754 5392 5366 2334 107 0 0 chr3 104147803 104148113 -113889045 - AluSx SINE Alu -2 310 1 314 311 45 40 chr3 104148113 104148261 -113888897 - L1 LINE L1 -780 5366 5215 2415 91 3 0 chr3 104148696 104149005 -113888153 - AluSg SINE Alu 0 310 1 23 33 0 0 chr3 104149296 104149326 -113887832 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr3 104149992 104150014 -113887144 + AT_rich Low_complexity Low_complexity 1 22 0 373 278 53 24 chr3 104150366 104150535 -113886623 - MIR SINE MIR -37 225 52 1936 91 60 0 chr3 104150913 104151205 -113885953 - AluSg SINE Alu 0 308 1 1976 126 0 0 chr3 104151284 104151554 -113885604 + AluSx SINE Alu 33 302 -10 215 286 44 33 chr3 104154837 104154928 -113882230 - MIR SINE MIR -52 210 119 326 289 33 72 chr3 104156390 104156542 -113880616 - L2 LINE L2 -10 3303 3158 2111 133 0 7 chr3 104156784 104157086 -113880072 - AluSx SINE Alu -12 300 1 180 77 0 0 chr3 104157094 104157120 -113880038 + (TC)n Simple_repeat Simple_repeat 1 26 0 4054 211 23 11 chr3 104157469 104157631 -113879527 + L1P LINE L1 2232 2391 -3755 2207 133 76 59 chr3 104157631 104158006 -113879152 + MSTA LTR MaLR 1 385 -43 1712 188 3 13 chr3 104158006 104158309 -113878849 - AluJo SINE Alu -8 304 5 2207 133 76 59 chr3 104158309 104158354 -113878804 + MSTA LTR MaLR 385 428 0 4054 211 23 11 chr3 104158354 104159122 -113878036 + L1P LINE L1 2391 3173 -2973 21 0 0 0 chr3 104159735 104159756 -113877402 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr3 104159964 104159985 -113877173 + (T)n Simple_repeat Simple_repeat 1 21 0 391 348 69 10 chr3 104160282 104160486 -113876672 + MIR SINE MIR 37 252 -10 327 104 0 0 chr3 104160789 104160837 -113876321 + (TG)n Simple_repeat Simple_repeat 2 49 0 271 294 22 86 chr3 104161158 104161389 -113875769 - L2 LINE L2 -275 2997 2770 2275 109 3 6 chr3 104162426 104162738 -113874420 - AluSp SINE Alu -2 311 1 1838 153 3 40 chr3 104162739 104163060 -113874098 - AluJb SINE Alu -3 309 1 22 0 0 0 chr3 104163061 104163083 -113874075 + AT_rich Low_complexity Low_complexity 1 22 0 903 272 4 4 chr3 104163292 104163524 -113873634 - L1ME3A LINE L1 -5 6165 5934 2359 149 76 38 chr3 104163615 104164065 -113873093 + MLT1C LTR MaLR 1 467 0 2246 104 0 25 chr3 104164753 104165070 -113872088 - AluSx SINE Alu 0 312 4 21 0 0 0 chr3 104165522 104165543 -113871615 + AT_rich Low_complexity Low_complexity 1 21 0 373 109 0 50 chr3 104165759 104165860 -113871298 + (TGGA)n Simple_repeat Simple_repeat 3 98 0 40 37 0 0 chr3 104166420 104166474 -113870684 + AT_rich Low_complexity Low_complexity 1 54 0 388 244 87 0 chr3 104166474 104166589 -113870569 - L1MA4 LINE L1 -4 6296 6172 739 310 71 4 chr3 104167952 104168191 -113868967 + MIR SINE MIR 8 262 0 2254 97 3 3 chr3 104168194 104168505 -113868653 - AluSx SINE Alu -1 311 1 484 305 207 46 chr3 104168527 104168875 -113868283 + L2 LINE L2 2868 3271 -1 393 254 130 107 chr3 104170264 104170441 -113866717 + MER5A DNA MER1_type 9 189 0 395 325 42 29 chr3 104170492 104170732 -113866426 - L3 LINE CR1 -146 1431 1189 1079 138 0 6 chr3 104170782 104170941 -113866217 - AluSg/x SINE Alu -16 296 139 208 227 45 0 chr3 104170946 104170990 -113866168 + L3 LINE CR1 1526 1571 -6 708 186 215 0 chr3 104171364 104171536 -113865622 + MER6B DNA MER2_type 1 209 -1 22 0 0 0 chr3 104171745 104171767 -113865391 + AT_rich Low_complexity Low_complexity 1 22 0 979 163 25 0 chr3 104171790 104171950 -113865208 - MER34 LTR ERV1 -12 530 367 6404 140 50 43 chr3 104171965 104172201 -113864957 + Tigger1 DNA MER2_type 26 259 -2159 2508 65 0 0 chr3 104172201 104172507 -113864651 - AluY SINE Alu -5 306 1 6404 140 50 43 chr3 104172507 104173419 -113863739 + Tigger1 DNA MER2_type 259 1182 -1236 823 144 16 0 chr3 104173419 104173544 -113863614 + FLAM_C SINE Alu 1 127 -16 7013 139 47 28 chr3 104173544 104174769 -113862389 + Tigger1 DNA MER2_type 1170 2418 0 186 65 32 0 chr3 104174770 104174801 -113862357 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2118 92 4 0 chr3 104174801 104175082 -113862076 - AluY SINE Alu -1 312 1 755 228 11 6 chr3 104175173 104175353 -113861805 - MER34 LTR ERV1 -323 219 39 291 104 21 0 chr3 104175396 104175444 -113861714 - Tigger1 DNA MER2_type -1204 1214 1166 189 74 0 0 chr3 104175470 104175497 -113861661 + (TG)n Simple_repeat Simple_repeat 2 28 0 242 209 0 81 chr3 104175617 104175703 -113861455 + CT-rich Low_complexity Low_complexity 3 81 0 211 308 62 0 chr3 104176630 104176695 -113860463 + MIR SINE MIR 64 132 -76 675 285 56 5 chr3 104177350 104177564 -113859594 + MIR SINE MIR 28 252 -10 2275 88 3 13 chr3 104177570 104177876 -113859282 - AluSx SINE Alu -9 303 1 651 321 71 18 chr3 104178566 104178790 -113858368 - MIR SINE MIR -20 242 7 192 320 6 126 chr3 104179297 104179472 -113857686 + MIR SINE MIR 55 208 0 530 230 17 22 chr3 104179973 104180128 -113857030 - MER5A DNA MER1_type -32 157 4 1551 219 24 33 chr3 104180458 104180883 -113856275 + L1ME1 LINE L1 5656 6076 -90 670 146 0 0 chr3 104180929 104181032 -113856126 + FLAM_A SINE Alu 29 131 -11 2294 107 0 7 chr3 104181063 104181363 -113855795 + AluSx SINE Alu 1 298 -14 23 54 0 0 chr3 104182401 104182438 -113854720 + AT_rich Low_complexity Low_complexity 1 37 0 197 224 35 17 chr3 104182602 104182660 -113854498 + MIR SINE MIR 204 262 0 250 279 103 61 chr3 104183145 104183310 -113853848 + MER91A DNA MER1_type 1 172 -24 21 0 0 0 chr3 104183464 104183485 -113853673 + AT_rich Low_complexity Low_complexity 1 21 0 277 127 0 95 chr3 104183875 104183938 -113853220 + MADE1 DNA Mariner 24 80 0 450 318 61 21 chr3 104184353 104184566 -113852592 + MIR SINE MIR 26 243 -19 192 219 0 0 chr3 104184594 104184626 -113852532 - MIR SINE MIR -13 249 218 404 272 105 37 chr3 104184730 104184892 -113852266 - MER5A DNA MER1_type 0 189 17 234 282 69 46 chr3 104185080 104185211 -113851947 + MIR SINE MIR 73 206 -56 2229 106 0 7 chr3 104186134 104186435 -113850723 - AluSg1 SINE Alu -10 299 1 266 314 58 25 chr3 104186577 104186698 -113850460 - MIR3 SINE MIR -71 137 13 599 236 144 13 chr3 104191541 104191770 -113845388 + MER112 DNA MER1_type 2 260 0 28 0 0 0 chr3 104192376 104192404 -113844754 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr3 104193258 104193288 -113843870 + AT_rich Low_complexity Low_complexity 1 30 0 248 311 33 0 chr3 104194822 104194883 -113842275 - MIR SINE MIR -173 89 27 2258 88 7 7 chr3 104194910 104195207 -113841951 + AluSg SINE Alu 1 297 -13 1059 256 50 84 chr3 104196601 104196954 -113840204 - MLT1J LTR MaLR -4 507 176 772 194 55 88 chr3 104196954 104197171 -113839987 - MER63A DNA MER1_type 0 210 1 1059 256 50 84 chr3 104197171 104197340 -113839818 - MLT1J LTR MaLR -335 176 3 303 311 25 8 chr3 104198392 104198511 -113838647 - MIR SINE MIR -58 150 30 361 296 53 8 chr3 104198653 104198785 -113838373 + MER91C DNA MER1_type 3 140 0 374 298 25 0 chr3 104198964 104199085 -113838073 - MLT1L LTR MaLR -342 273 150 4148 47 0 45 chr3 104200651 104201208 -113835950 + L1PA7 LINE L1 5622 6153 -1 23 54 0 0 chr3 104203532 104203569 -113833589 + AT_rich Low_complexity Low_complexity 1 37 0 390 299 64 25 chr3 104204286 104204490 -113832668 + MIR SINE MIR 48 259 -3 2801 310 91 27 chr3 104204924 104206507 -113830651 - L2 LINE L2 -2 3311 1608 236 352 101 25 chr3 104206540 104206671 -113830487 - L2 LINE L2 -1808 1506 1360 234 0 0 0 chr3 104206671 104206697 -113830461 + (TG)n Simple_repeat Simple_repeat 2 27 0 236 352 101 25 chr3 104206697 104206724 -113830434 - L2 LINE L2 -1954 1360 1336 185 245 57 19 chr3 104207591 104207644 -113829514 + L3 LINE CR1 1266 1320 -257 334 250 58 29 chr3 104209218 104209390 -113827768 - L1ME LINE L1 -346 5775 5599 1593 319 136 22 chr3 104209603 104210582 -113826576 - L2 LINE L2 -1272 2042 953 1848 125 16 36 chr3 104212224 104212528 -113824630 - AluSx SINE Alu -14 298 1 1919 112 7 36 chr3 104214319 104214623 -113822535 + AluSx SINE Alu 1 295 -17 1381 93 4 49 chr3 104215319 104215545 -113821613 + L1PA16 LINE L1 5942 6157 -9 201 39 0 0 chr3 104215964 104215990 -113821168 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr3 104216749 104216770 -113820388 + AT_rich Low_complexity Low_complexity 1 21 0 20563 38 5 0 chr3 104221413 104224690 -113812468 - L1PA5 LINE L1 -145 6009 2718 964 47 0 0 chr3 104224690 104224797 -113812361 - U6 snRNA snRNA 0 107 1 212 247 135 22 chr3 104225608 104225697 -113811461 + MIR SINE MIR 8 106 -156 437 227 84 0 chr3 104225731 104225850 -113811308 + MIR SINE MIR 92 220 -42 256 259 0 59 chr3 104226339 104226424 -113810734 + L2 LINE L2 3192 3271 -1 426 336 138 23 chr3 104226442 104226883 -113810275 + L2 LINE L2 2367 2858 -456 1856 189 57 14 chr3 104226979 104227329 -113809829 + MLT1A1 LTR MaLR 1 365 0 189 325 0 62 chr3 104227548 104227628 -113809530 + L2 LINE L2 3190 3264 -8 241 309 18 36 chr3 104228019 104228129 -113809029 + L1MC5 LINE L1 7816 7923 -38 569 253 159 53 chr3 104228235 104228711 -113808447 + L1ME4a LINE L1 5298 5826 -295 363 219 67 57 chr3 104228817 104228922 -113808236 - MIR3 SINE MIR -17 191 86 197 294 170 49 chr3 104229073 104229379 -113807779 - L2 LINE L2 -1661 1653 1311 22 70 0 0 chr3 104231284 104231327 -113805831 + AT_rich Low_complexity Low_complexity 1 43 0 360 229 0 12 chr3 104231575 104231658 -113805500 - L2 LINE L2 0 3313 3232 30 0 0 0 chr3 104232545 104232575 -113804583 + AT_rich Low_complexity Low_complexity 1 30 0 1465 158 24 57 chr3 104232816 104232979 -113804179 - AluJo SINE Alu -24 288 138 1750 140 87 0 chr3 104232979 104233244 -113803914 - AluSx SINE Alu -22 290 3 1465 158 24 57 chr3 104233244 104233378 -113803780 - AluJo SINE Alu -174 138 1 216 333 0 0 chr3 104233598 104233652 -113803506 - MIR SINE MIR -117 91 38 188 381 41 21 chr3 104234152 104234249 -113802909 - L2 LINE L2 -16 3256 3158 3628 234 83 58 chr3 104234569 104236054 -113801104 + L1MEc LINE L1 136 1658 -4738 1747 138 57 18 chr3 104236495 104236778 -113800380 - AluJo SINE Alu -16 296 3 2192 133 80 38 chr3 104238214 104238728 -113798430 + MLT2A2 LTR ERVL 1 554 0 674 280 113 48 chr3 104239373 104239709 -113797449 + L2 LINE L2 2952 3309 -4 194 292 101 34 chr3 104239834 104239923 -113797235 + MIR SINE MIR 158 252 -10 21 0 0 0 chr3 104239923 104239944 -113797214 + AT_rich Low_complexity Low_complexity 1 21 0 469 181 150 1 chr3 104240735 104240905 -113796253 + MER58C DNA MER1_type 1 215 0 2215 103 0 3 chr3 104241477 104241779 -113795379 + AluSg SINE Alu 1 301 -9 2147 119 0 0 chr3 104242590 104242884 -113794274 - AluSq SINE Alu -19 294 1 262 296 12 0 chr3 104243054 104243135 -113794023 - L1MC/D LINE L1 -1993 5815 5734 462 208 92 92 chr3 104243168 104243375 -113793783 - L2 LINE L2 -3 3310 3104 395 233 340 19 chr3 104243431 104243590 -113793568 - MIR SINE MIR -34 228 19 714 303 59 32 chr3 104243697 104244106 -113793052 - L2 LINE L2 -339 2975 2556 561 88 0 0 chr3 104245334 104245414 -113791744 + (TA)n Simple_repeat Simple_repeat 2 81 0 626 244 57 34 chr3 104245598 104245774 -113791384 + MER5A DNA MER1_type 10 189 0 310 290 100 35 chr3 104246006 104246206 -113790952 + L2 LINE L2 2857 3069 -203 228 305 105 21 chr3 104246363 104246458 -113790700 + L2 LINE L2 3170 3272 0 2631 206 70 20 chr3 104247618 104248812 -113788346 + L1MC4 LINE L1 4799 5403 -743 1967 151 18 41 chr3 104248483 104248874 -113788284 + L1MB8 LINE L1 5739 6120 -58 * 919 115 39 0 chr3 104248895 104249025 -113788133 - L1PA16 LINE L1 -9 6157 6023 * 5608 192 8 2 chr3 104249019 104250803 -113786355 - L1PA13 LINE L1 -1 7600 5759 1593 114 117 60 chr3 104250803 104251084 -113786074 - AluSx SINE Alu -15 297 1 8007 222 26 9 chr3 104251088 104253288 -113783870 - L1PA13 LINE L1 -2885 4699 2471 1181 315 15 10 chr3 104253360 104253770 -113783388 - L1PA13 LINE L1 -5936 1645 1234 604 178 0 0 chr3 104253771 104253878 -113783280 - L1PA13 LINE L1 -7349 232 126 3771 150 21 2 chr3 104253900 104254520 -113782638 - L1MA4 LINE L1 -4 6296 5665 2263 112 3 0 chr3 104254699 104255002 -113782156 - AluSx SINE Alu -7 305 2 244 154 19 39 chr3 104255194 104255246 -113781912 - L2 LINE L2 0 3313 3263 2271 117 3 0 chr3 104255272 104255580 -113781578 - AluSq SINE Alu -4 309 1 390 91 0 0 chr3 104255634 104255689 -113781469 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 219 69 0 0 chr3 104255790 104255819 -113781339 + (TG)n Simple_repeat Simple_repeat 2 30 0 287 255 66 28 chr3 104255819 104255925 -113781233 - L1MEc LINE L1 -4494 1902 1793 328 223 39 46 chr3 104255952 104256082 -113781076 - L1MEc LINE L1 -6233 163 35 2804 86 54 56 chr3 104256197 104256787 -113780371 - SVA Other Other -367 1019 431 994 210 22 26 chr3 104256850 104257122 -113780036 - SVA Other Other -520 866 596 1526 88 20 102 chr3 104257253 104257960 -113779198 - SVA Other Other -518 868 432 5378 78 29 65 chr3 104257974 104260063 -113777095 - SVA Other Other -518 868 58 261 0 0 0 chr3 104260064 104260093 -113777065 + (GGGAGA)n Simple_repeat Simple_repeat 1 29 0 415 21 0 0 chr3 104260093 104260141 -113777017 + SVA Other Other 1040 1087 -299 275 111 0 0 chr3 104260141 104260341 -113776817 - Alu SINE Alu 0 442 243 728 183 23 0 chr3 104260341 104260472 -113776686 - L1PA12 LINE L1 -7442 139 6 365 188 0 0 chr3 104260475 104260544 -113776614 + L1MB7 LINE L1 6108 6176 -8 671 326 84 39 chr3 104260653 104261094 -113776064 - L2 LINE L2 0 3313 2853 778 322 75 0 chr3 104261133 104261425 -113775733 - L2 LINE L2 -587 2727 2414 1303 204 26 8 chr3 104261563 104261827 -113775331 - AluJo SINE Alu -40 272 4 2246 88 0 10 chr3 104262819 104263113 -113774045 + AluY SINE Alu 1 291 -20 261 0 0 0 chr3 104265073 104265102 -113772056 + (CA)n Simple_repeat Simple_repeat 1 29 0 2067 121 0 17 chr3 104265382 104265701 -113771457 - AluSq SINE Alu 0 314 1 445 327 101 57 chr3 104266539 104267141 -113770017 + L2 LINE L2 2595 3226 -46 194 250 0 17 chr3 104268308 104268368 -113768790 - MIR SINE MIR -90 118 60 4799 94 29 6 chr3 104269014 104269670 -113767488 - L1PA13 LINE L1 0 6163 5493 31 76 0 0 chr3 104269860 104269926 -113767232 + AT_rich Low_complexity Low_complexity 1 66 0 2366 88 3 0 chr3 104269926 104270222 -113766936 + AluSp SINE Alu 1 297 -16 340 294 51 62 chr3 104271110 104271255 -113765903 + L2 LINE L2 2174 2318 -996 1418 110 25 86 chr3 104271255 104271500 -113765658 + MER30 DNA MER1_type 1 230 0 340 294 51 62 chr3 104271500 104271531 -113765627 + L2 LINE L2 2318 2348 -966 409 286 32 32 chr3 104271594 104271748 -113765410 - MARNA DNA Mariner -352 234 81 600 201 77 64 chr3 104271750 104272008 -113765150 + L1ME LINE L1 4222 4477 -1669 * 8477 81 16 3 chr3 104271977 104273144 -113764014 + L1P LINE L1 3983 5164 -982 2299 100 7 0 chr3 104273284 104273585 -113763573 - AluSx SINE Alu -9 303 1 1486 250 51 51 chr3 104273660 104274128 -113763030 + MLT1E3 LTR MaLR 157 624 0 606 269 61 53 chr3 104274276 104274540 -113762618 + Charlie8 DNA MER1_type 63 328 -2089 282 273 13 0 chr3 104274530 104274607 -113762551 + Charlie8 DNA MER1_type 2339 2416 -1 * 267 275 67 42 chr3 104275098 104275218 -113761940 - L2 LINE L2 -18 3254 3132 818 269 95 16 chr3 104275853 104276525 -113760633 + L1ME LINE L1 4952 5677 -485 23 0 0 0 chr3 104276572 104276595 -113760563 + AT_rich Low_complexity Low_complexity 1 23 0 5308 96 83 87 chr3 104277977 104279527 -113757631 - pTR5 LTR ERV1 0 2438 136 941 165 56 84 chr3 104279541 104279856 -113757302 + L1MA8 LINE L1 5099 5396 -750 38413 63 19 1 chr3 104279869 104285905 -113751253 + L1PA5 LINE L1 11 6154 0 4305 134 65 14 chr3 104285899 104286741 -113750417 + L1MA8 LINE L1 5385 6269 -22 * 7838 37 8 4 chr3 104286758 104288493 -113748665 - L1PA5 LINE L1 -7 6147 4405 306 311 14 27 chr3 104288520 104288767 -113748391 + HAL1b LINE L1 222 425 -923 2405 84 0 3 chr3 104288833 104289144 -113748014 - AluY SINE Alu -1 310 1 291 100 80 0 chr3 104289445 104289495 -113747663 + MSTB2 LTR MaLR 1 54 -403 5947 192 28 73 chr3 104289504 104290617 -113746541 - L1PB3 LINE L1 0 6154 4993 3133 144 16 0 chr3 104290617 104291123 -113746035 - MER75 DNA T2_type 0 514 1 5947 192 28 73 chr3 104291123 104291525 -113745633 - L1PB3 LINE L1 -1161 4993 4575 579 198 157 0 chr3 104291525 104291646 -113745512 + AluJb SINE Alu 134 273 -39 5947 192 28 73 chr3 104291646 104291685 -113745473 - L1PB3 LINE L1 -1579 4575 4536 1024 106 12 6 chr3 104291685 104291855 -113745303 + (GAAA)n Simple_repeat Simple_repeat 3 173 0 5947 192 28 73 chr3 104291855 104293138 -113744020 - L1PB3 LINE L1 -1618 4536 3345 451 135 14 0 chr3 104293148 104293222 -113743936 - U3 snRNA snRNA -142 75 1 * 1360 222 97 10 chr3 104293221 104293604 -113743554 + MSTB2 LTR MaLR 41 456 -1 364 308 115 38 chr3 104293977 104294627 -113742531 + L1MC4a LINE L1 2210 2943 -3203 412 294 78 11 chr3 104294755 104294935 -113742223 + L1MC4a LINE L1 3105 3296 -2850 796 263 68 44 chr3 104295139 104295657 -113741501 + L1MC4a LINE L1 3441 3970 -2176 1140 194 13 94 chr3 104295671 104296063 -113741095 + MLT1A2 LTR MaLR 4 363 -11 632 305 54 52 chr3 104296077 104297346 -113739812 + L1MC4a LINE L1 4060 5330 -816 737 168 8 0 chr3 104297346 104297465 -113739693 + FLAM_A SINE Alu 12 131 -11 5429 221 110 42 chr3 104297465 104299539 -113737619 + L1MC4a LINE L1 5309 7524 -284 242 192 14 55 chr3 104300228 104300301 -113736857 - L1MC5 LINE L1 -54 7907 7838 538 277 133 53 chr3 104300368 104300484 -113736674 - L1MC5 LINE L1 -229 7732 7627 2045 59 0 4 chr3 104300484 104300738 -113736420 - AluY SINE Alu -15 296 44 538 277 133 53 chr3 104300738 104301018 -113736140 - L1MC5 LINE L1 -334 7627 7304 490 244 65 30 chr3 104301564 104301732 -113735426 - MER5B DNA MER1_type -4 174 1 573 265 219 33 chr3 104301760 104301975 -113735183 - MIR SINE MIR -7 255 1 2049 101 16 47 chr3 104302056 104302374 -113734784 + AluSq SINE Alu 1 308 -5 1078 87 251 0 chr3 104302991 104303210 -113733948 - L1MA5A LINE L1 -2 6295 6022 5751 68 10 11 chr3 104303516 104304313 -113732845 - L1PA6 LINE L1 0 6154 5359 322 183 14 0 chr3 104306577 104306648 -113730510 + MER112 DNA MER1_type 189 260 0 933 179 47 11 chr3 104306911 104307101 -113730057 + MER20 DNA MER1_type 15 211 -8 389 194 93 0 chr3 104308602 104308710 -113728448 - L1M4 LINE L1 -3748 2398 2281 2901 163 18 0 chr3 104308757 104309265 -113727893 - L1MC1 LINE L1 -1 6332 5816 335 326 80 40 chr3 104309494 104309718 -113727440 + MIR SINE MIR 30 262 0 301 293 116 66 chr3 104309907 104310269 -113726889 + L2 LINE L2 751 1130 -2184 770 203 114 78 chr3 104310502 104310940 -113726218 + LTR37B LTR ERV1 7 460 -8 1574 212 74 14 chr3 104311181 104311615 -113725543 + MLT1C LTR MaLR 1 460 -7 215 185 19 19 chr3 104311740 104311794 -113725364 + CT-rich Low_complexity Low_complexity 4 57 0 329 356 69 25 chr3 104312060 104312220 -113724938 - L2 LINE L2 -18 3254 3088 189 154 0 0 chr3 104312234 104312273 -113724885 + (TG)n Simple_repeat Simple_repeat 1 39 0 360 148 0 0 chr3 104312275 104312336 -113724822 + (GA)n Simple_repeat Simple_repeat 2 62 0 189 0 0 0 chr3 104312339 104312360 -113724798 + (CAAG)n Simple_repeat Simple_repeat 2 22 0 547 350 44 22 chr3 104312545 104312924 -113724234 + L2 LINE L2 2616 3002 -270 182 375 153 7 chr3 104313192 104313336 -113723822 + MIR SINE MIR 20 184 -78 271 343 26 89 chr3 104316038 104316309 -113720849 - L2 LINE L2 -212 3060 2807 200 290 97 11 chr3 104318646 104318739 -113718419 - MIR SINE MIR -56 152 52 21 0 0 0 chr3 104318954 104318975 -113718183 + AT_rich Low_complexity Low_complexity 1 21 0 285 211 100 0 chr3 104319299 104319389 -113717769 - L1ME4a LINE L1 -53 6068 5970 23 0 0 0 chr3 104319593 104319616 -113717542 + AT_rich Low_complexity Low_complexity 1 23 0 249 250 95 12 chr3 104319763 104319847 -113717311 - MIR SINE MIR -71 191 101 2297 57 34 3 chr3 104320058 104320355 -113716803 - AluSc SINE Alu -1 308 3 442 264 50 25 chr3 104320523 104320682 -113716476 + MIR SINE MIR 96 258 -4 293 260 10 10 chr3 104321951 104322047 -113715111 + GA-rich Low_complexity Low_complexity 2 97 0 27 29 0 0 chr3 104322047 104322081 -113715077 + GC_rich Low_complexity Low_complexity 1 34 0 356 334 67 95 chr3 104322100 104322951 -113714207 + L1M2 LINE L1 442 1268 -5581 476 297 93 30 chr3 104323437 104323673 -113713485 - L2 LINE L2 -837 2477 2227 213 178 0 44 chr3 104323673 104323725 -113713433 + (CATA)n Simple_repeat Simple_repeat 1 49 0 217 271 114 14 chr3 104323770 104323840 -113713318 - L3 LINE CR1 -17 1560 1484 222 339 115 8 chr3 104323848 104323978 -113713180 - L2 LINE L2 -4 3309 3166 2397 74 6 3 chr3 104324325 104324637 -113712521 - AluSp SINE Alu 0 313 1 2675 46 0 0 chr3 104326281 104326583 -113710575 + AluY SINE Alu 1 302 -9 2425 63 3 17 chr3 104326583 104326884 -113710274 + AluY SINE Alu 1 297 -14 246 267 0 67 chr3 104328271 104328346 -113708812 + MIR SINE MIR 81 150 -58 26 30 0 0 chr3 104329202 104329235 -113707923 + AT_rich Low_complexity Low_complexity 1 33 0 820 85 9 0 chr3 104329266 104329372 -113707786 + U6 snRNA snRNA 1 107 0 9645 157 19 4 chr3 104329379 104331068 -113706090 + L1PA11 LINE L1 2086 3800 -2346 6640 104 28 4 chr3 104331066 104331775 -113705383 + L1PA11 LINE L1 4651 5342 -832 * 2507 58 0 23 chr3 104331775 104332084 -113705074 + AluY SINE Alu 1 302 -9 6640 104 28 4 chr3 104332084 104332864 -113704294 + L1PA11 LINE L1 5342 6172 -2 1965 165 0 3 chr3 104335600 104335909 -113701249 + AluJb SINE Alu 1 308 -4 271 190 29 29 chr3 104336064 104336201 -113700957 + CT-rich Low_complexity Low_complexity 1 137 0 553 294 11 5 chr3 104336275 104336462 -113700696 - MIR SINE MIR -2 260 73 1948 125 83 14 chr3 104336465 104336816 -113700342 + THE1C LTR MaLR 1 375 0 1425 121 25 0 chr3 104337313 104337512 -113699646 + AluSx SINE Alu 3 206 -106 313 228 22 50 chr3 104340472 104340652 -113696506 + (CACAA)n Simple_repeat Simple_repeat 3 177 0 767 94 80 143 chr3 104341304 104341528 -113695630 - AluSx SINE Alu -100 212 3 2525 72 0 3 chr3 104341760 104342064 -113695094 - AluSc SINE Alu -6 303 1 21 0 0 0 chr3 104342070 104342091 -113695067 + AT_rich Low_complexity Low_complexity 1 21 0 204 241 126 0 chr3 104342926 104343013 -113694145 + MIR SINE MIR 40 137 -125 8512 58 10 4 chr3 104345008 104346104 -113691054 - L1P LINE L1 -1632 4514 3412 2304 92 0 13 chr3 104346216 104346520 -113690638 + AluY SINE Alu 11 310 -1 282 325 8 8 chr3 104350890 104351013 -113686145 + (TG)n Simple_repeat Simple_repeat 2 124 0 400 102 12 27 chr3 104352706 104352788 -113684370 + Alu SINE Alu 1 65 -243 312 201 198 83 chr3 104353038 104353352 -113683806 - L1M2 LINE L1 -5463 1386 1037 1557 196 0 4 chr3 104354560 104354841 -113682317 - AluJo SINE Alu -26 286 7 3240 250 36 49 chr3 104355280 104356555 -113680603 + L1ME1 LINE L1 2905 4163 -1983 14867 221 32 27 chr3 104356567 104357587 -113679571 + L1PA12 LINE L1 8 1022 -6562 1728 65 57 9 chr3 104357587 104357816 -113679342 - AluY SINE Alu -21 290 51 14867 221 32 27 chr3 104357816 104358405 -113678753 + L1PA12 LINE L1 1022 1607 -5977 2899 10 0 0 chr3 104358405 104358714 -113678444 + AluY SINE Alu 1 309 -2 14867 221 32 27 chr3 104358714 104360705 -113676453 + L1PA12 LINE L1 1607 3587 -3997 186 71 0 0 chr3 104360705 104360733 -113676425 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 7496 34 1 33 chr3 104360739 104362382 -113674776 - L1PA5 LINE L1 -8 6146 4529 14867 221 32 27 chr3 104362382 104363623 -113673535 + L1PA12 LINE L1 3591 5672 -1912 12058 235 22 13 chr3 104363608 104366702 -113670456 + L1PA16 LINE L1 1865 4984 -1162 * 1705 179 0 14 chr3 104366804 104367089 -113670069 + L1PA16 LINE L1 5858 6138 -28 254 182 15 0 chr3 104367090 104367156 -113670002 + GA-rich Low_complexity Low_complexity 2 68 0 3001 199 64 44 chr3 104367167 104368188 -113668970 + L1ME1 LINE L1 5121 6151 -15 23 68 0 0 chr3 104368723 104368767 -113668391 + AT_rich Low_complexity Low_complexity 1 44 0 2579 128 50 9 chr3 104368848 104369309 -113667849 + L1MB2 LINE L1 5690 6169 -2 1365 204 89 55 chr3 104369341 104369795 -113667363 + MLT2B1 LTR ERVL 1 462 -2 421 256 116 58 chr3 104369822 104369994 -113667164 - L1MC/D LINE L1 -517 5604 5468 667 302 93 4 chr3 104369994 104370366 -113666792 + MLT1J LTR MaLR 27 459 -52 2673 37 0 0 chr3 104370915 104371214 -113665944 - AluY SINE Alu -1 310 12 298 197 0 40 chr3 104371214 104371283 -113665875 - MER5A DNA MER1_type -5 184 117 515 286 7 34 chr3 104372184 104372331 -113664827 - MIR3 SINE MIR -25 183 41 21 0 0 0 chr3 104372699 104372720 -113664438 + AT_rich Low_complexity Low_complexity 1 21 0 860 164 0 0 chr3 104372913 104373053 -113664105 - AluSg/x SINE Alu -12 300 161 1583 113 0 0 chr3 104373053 104373256 -113663902 - AluSx SINE Alu -104 208 6 24 53 0 0 chr3 104373269 104373307 -113663851 + AT_rich Low_complexity Low_complexity 1 38 0 333 250 28 19 chr3 104373965 104374073 -113663085 - MIR SINE MIR -105 157 49 2526 153 41 2 chr3 104374905 104375317 -113661841 + MSTA LTR MaLR 1 428 0 15876 165 43 11 chr3 104375844 104376851 -113660307 - L1PBa LINE L1 -2376 4486 3513 2130 118 7 0 chr3 104376851 104377147 -113660011 - AluSg SINE Alu -12 298 1 15876 165 43 11 chr3 104377147 104377535 -113659623 - L1PBa LINE L1 -3349 3513 3139 2000 96 35 54 chr3 104377535 104377848 -113659310 - AluSq SINE Alu 0 313 7 15876 165 43 11 chr3 104377848 104378820 -113658338 - L1PBa LINE L1 -3723 3139 2200 6210 53 11 1 chr3 104378820 104379606 -113657552 + L1PA7 LINE L1 5361 6154 0 15876 165 43 11 chr3 104379606 104381469 -113655689 - L1PBa LINE L1 -4662 2200 117 3034 95 18 18 chr3 104381469 104381871 -113655287 + MLT2A1 LTR ERVL 1 405 -39 233 29 29 0 chr3 104381871 104381905 -113655253 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 3034 95 18 18 chr3 104381905 104381946 -113655212 + MLT2A1 LTR ERVL 404 444 0 15876 165 43 11 chr3 104381946 104381988 -113655170 - L1PBa LINE L1 -6745 117 78 25 31 0 0 chr3 104382382 104382414 -113654744 + AT_rich Low_complexity Low_complexity 1 32 0 36 40 0 0 chr3 104382985 104383035 -113654123 + AT_rich Low_complexity Low_complexity 1 50 0 23 33 0 0 chr3 104384145 104384175 -113652983 + AT_rich Low_complexity Low_complexity 1 30 0 591 226 119 25 chr3 104384446 104384605 -113652553 - MIR SINE MIR -8 254 81 2115 118 0 0 chr3 104384839 104385143 -113652015 + AluSc SINE Alu 1 304 -5 1516 156 0 76 chr3 104385147 104385436 -113651722 + AluJo SINE Alu 1 267 -45 183 156 0 0 chr3 104385461 104385493 -113651665 + CT-rich Low_complexity Low_complexity 3 34 0 23 0 0 0 chr3 104385689 104385712 -113651446 + AT_rich Low_complexity Low_complexity 1 23 0 268 200 0 17 chr3 104385926 104385986 -113651172 + MIR SINE MIR 95 153 -109 334 280 65 69 chr3 104386754 104386916 -113650242 + MIR SINE MIR 17 174 -62 194 321 261 14 chr3 104388391 104388606 -113648552 + L2 LINE L2 2553 2820 -494 1075 189 19 33 chr3 104388609 104388821 -113648337 + MER20 DNA MER1_type 10 218 -1 433 364 60 43 chr3 104389128 104389430 -113647728 + L2 LINE L2 2966 3272 0 297 333 46 95 chr3 104390072 104390684 -113646474 + MLT1K LTR MaLR 5 586 -2 376 320 65 45 chr3 104392145 104392454 -113644704 - MLT1I LTR MaLR -27 382 68 911 264 87 41 chr3 104392572 104392939 -113644219 + MLT1I LTR MaLR 4 387 -22 202 273 39 0 chr3 104393285 104393362 -113643796 + CT-rich Low_complexity Low_complexity 2 81 0 338 247 202 22 chr3 104393492 104393627 -113643531 + MIR SINE MIR 31 188 -74 280 204 61 61 chr3 104394040 104394138 -113643020 + LTR33 LTR ERVL 410 507 -14 23 0 0 0 chr3 104394368 104394391 -113642767 + AT_rich Low_complexity Low_complexity 1 23 0 3994 230 96 12 chr3 104394425 104395587 -113641571 - L1MC4 LINE L1 -140 7902 6644 1909 232 100 4 chr3 104395625 104396094 -113641064 - MLT1F LTR MaLR -28 514 1 523 214 107 51 chr3 104396111 104396276 -113640882 - L1MC4 LINE L1 -1384 6658 6481 1379 174 4 0 chr3 104396276 104396511 -113640647 - MER46A DNA MER2_type 0 236 1 523 214 107 51 chr3 104396511 104396523 -113640635 - L1MC4 LINE L1 -1561 6481 6471 2480 57 0 0 chr3 104396523 104396819 -113640339 - AluY SINE Alu -15 296 1 225 246 0 18 chr3 104397241 104397298 -113639860 + CT-rich Low_complexity Low_complexity 2 57 0 858 92 0 17 chr3 104397503 104397662 -113639496 + AluSg/x SINE Alu 165 321 0 261 0 0 0 chr3 104399093 104399122 -113638036 + (CA)n Simple_repeat Simple_repeat 2 30 0 808 313 105 17 chr3 104399531 104399892 -113637266 + MLT1K LTR MaLR 11 403 -185 2568 44 0 0 chr3 104399987 104400282 -113636876 - AluY SINE Alu -16 295 1 556 301 25 6 chr3 104400436 104400599 -113636559 - MIR SINE MIR -10 252 87 964 157 163 101 chr3 104400608 104400914 -113636244 - MLT1A1 LTR MaLR -40 325 1 6604 92 1 0 chr3 104401496 104402798 -113634360 + L1PA10 LINE L1 4858 6158 -10 1662 180 44 30 chr3 104403115 104403482 -113633676 - MLT1A2 LTR MaLR 0 374 3 912 139 76 17 chr3 104403510 104403646 -113633512 - MER50 LTR ERV1 -132 602 453 2512 40 3 3 chr3 104403646 104403949 -113633209 - AluY SINE Alu -8 303 1 912 139 76 17 chr3 104403949 104403984 -113633174 - MER50 LTR ERV1 -281 453 421 207 146 0 0 chr3 104405006 104405047 -113632111 + (CA)n Simple_repeat Simple_repeat 2 42 0 294 29 0 0 chr3 104405667 104405702 -113631456 + (CAGT)n Simple_repeat Simple_repeat 1 35 0 181 262 139 82 chr3 104405702 104405813 -113631345 - L2 LINE L2 -13 3259 3139 333 280 115 0 chr3 104406263 104406405 -113630753 + MIR SINE MIR 33 197 -65 202 341 22 33 chr3 104407162 104407253 -113629905 - MIR SINE MIR -82 126 37 200 186 93 0 chr3 104407357 104407400 -113629758 + L2 LINE L2 3266 3312 -1 229 229 84 46 chr3 104407983 104408114 -113629044 - L1ME4a LINE L1 -4 6117 5982 279 336 38 23 chr3 104408854 104408985 -113628173 - MIR3 SINE MIR -67 141 9 24 32 0 0 chr3 104409404 104409435 -113627723 + AT_rich Low_complexity Low_complexity 1 31 0 1108 207 14 5 chr3 104410078 104410295 -113626863 + MER20 DNA MER1_type 1 219 0 434 239 60 0 chr3 104410826 104410909 -113626249 - L1MA10 LINE L1 -4 6330 6248 970 230 33 63 chr3 104410909 104411296 -113625862 - L1ME1 LINE L1 -95 6071 5736 401 145 53 0 chr3 104412982 104413058 -113624100 - MER116 DNA Mariner 0 80 1 519 299 104 24 chr3 104413091 104413302 -113623856 + MIR SINE MIR 26 253 -9 342 188 16 0 chr3 104413344 104413408 -113623750 - MER46C DNA MER2_type -11 327 263 276 211 70 9 chr3 104413432 104413546 -113623612 + (TTATA)n Simple_repeat Simple_repeat 5 125 0 611 245 7 26 chr3 104413600 104413751 -113623407 - MER45A DNA AcHobo 0 178 31 313 164 18 0 chr3 104413786 104413841 -113623317 + U7 snRNA snRNA 2 57 -6 387 204 65 11 chr3 104413906 104413999 -113623159 - MER46C DNA MER2_type -102 236 139 3369 18 0 0 chr3 104414003 104414386 -113622772 + L1P1 LINE L1 5381 5763 -392 2246 169 49 2 chr3 104414596 104415005 -113622153 + MSTA LTR MaLR 1 428 0 27 0 0 0 chr3 104415309 104415336 -113621822 + AT_rich Low_complexity Low_complexity 1 27 0 918 228 5 27 chr3 104416018 104416242 -113620916 - MER20 DNA MER1_type 0 219 1 364 291 74 34 chr3 104417753 104417928 -113619230 - MER117 DNA MER1_type -15 182 1 1552 168 30 56 chr3 104418711 104419015 -113618143 + AluJo SINE Alu 3 298 -14 651 310 265 9 chr3 104419286 104419825 -113617333 - L3 LINE CR1 -557 1020 344 22 0 0 0 chr3 104421472 104421494 -113615664 + AT_rich Low_complexity Low_complexity 1 22 0 334 157 24 12 chr3 104421524 104421607 -113615551 + CT-rich Low_complexity Low_complexity 2 85 0 252 304 76 0 chr3 104421612 104421691 -113615467 - L2 LINE L2 -1 3271 3187 183 80 0 0 chr3 104422639 104422664 -113614494 + (T)n Simple_repeat Simple_repeat 1 25 0 32006 28 16 1 chr3 104422686 104428713 -113608445 - L1HS LINE L1 -1 6154 4 228 291 0 12 chr3 104430334 104430420 -113606738 + CT-rich Low_complexity Low_complexity 3 87 0 509 137 0 11 chr3 104430428 104430523 -113606635 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 192 125 0 0 chr3 104430533 104430565 -113606593 + (T)n Simple_repeat Simple_repeat 1 32 0 908 218 77 20 chr3 104430971 104431219 -113605939 - MIR SINE MIR 0 262 1 431 115 0 0 chr3 104431550 104431611 -113605547 - AluSp/q SINE Alu -21 292 232 607 256 28 11 chr3 104431774 104431954 -113605204 + LTR41 LTR ERVL 1 183 -590 370 205 13 3 chr3 104432470 104432559 -113604599 + LTR41 LTR ERVL 702 772 -1 2248 172 110 25 chr3 104432688 104433206 -113603952 - L1MC2 LINE L1 -12 6332 5771 2814 197 29 11 chr3 104433206 104433824 -113603334 - L1PA15 LINE L1 0 6165 5537 1678 197 18 11 chr3 104435690 104436071 -113601087 - LTR37A LTR ERV1 -2 424 41 6199 198 31 62 chr3 104436661 104438250 -113598908 + MER31B-int LTR ERV1 3378 4916 -20 1509 242 43 21 chr3 104438250 104438668 -113598490 + MER31B LTR ERV1 1 427 -39 1802 121 121 44 chr3 104438675 104439013 -113598145 + THE1B LTR MaLR 1 364 0 321 223 77 15 chr3 104439077 104439207 -113597951 + LTR37A LTR ERV1 289 426 0 263 250 33 0 chr3 104439306 104439366 -113597792 - MER91 DNA MER1_type -2 138 77 416 229 10 0 chr3 104439399 104439495 -113597663 - MER58A DNA MER1_type 0 152 56 12754 212 30 20 chr3 104439534 104441940 -113595218 - L1PA16 LINE L1 -9 6860 4482 2098 137 22 27 chr3 104441940 104442306 -113594852 - THE1B LTR MaLR 0 364 1 10729 107 6 34 chr3 104442306 104443931 -113593227 - THE1B-int LTR MaLR 0 1580 1 2002 163 42 22 chr3 104443931 104444288 -113592870 - THE1B LTR MaLR 0 364 1 12754 212 30 20 chr3 104444288 104446070 -113591088 - L1PA16 LINE L1 -2387 4482 2721 4268 24 0 0 chr3 104446070 104446563 -113590595 - L1PA3 LINE L1 -3 6152 5660 12754 212 30 20 chr3 104446563 104448124 -113589034 - L1PA16 LINE L1 -4148 2721 958 1191 138 0 67 chr3 104448122 104448245 -113588913 - L1PA16 LINE L1 -6647 202 97 * 2398 30 40 13 chr3 104448245 104448544 -113588614 + AluY SINE Alu 1 307 -4 1191 138 0 67 chr3 104448544 104448630 -113588528 - L1PA16 LINE L1 -6752 97 7 228 246 193 0 chr3 104448630 104448687 -113588471 - MER58A DNA MER1_type -39 68 1 454 273 36 22 chr3 104449191 104449330 -113587828 + MLT1F LTR MaLR 147 287 -268 1782 162 85 6 chr3 104449375 104449703 -113587455 - MSTB LTR MaLR -72 354 1 354 125 18 0 chr3 104449703 104449759 -113587399 - MSTB-int LTR MaLR 0 1651 1595 * 2793 179 40 6 chr3 104449758 104450290 -113586868 - MSTB-int LTR MaLR -1101 550 1 2130 163 87 2 chr3 104450290 104450683 -113586475 - MSTB LTR MaLR 0 426 1 564 298 66 9 chr3 104450683 104450911 -113586247 + MLT1F LTR MaLR 289 529 -13 23 0 0 0 chr3 104451004 104451027 -113586131 + AT_rich Low_complexity Low_complexity 1 23 0 243 207 86 0 chr3 104451120 104451178 -113585980 + L1ME LINE L1 5650 5712 -452 23 33 0 0 chr3 104451233 104451263 -113585895 + AT_rich Low_complexity Low_complexity 1 30 0 222 37 0 0 chr3 104451469 104451496 -113585662 + (TA)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr3 104451689 104451710 -113585448 + AT_rich Low_complexity Low_complexity 1 21 0 365 311 166 20 chr3 104451749 104452045 -113585113 - L1MC/D LINE L1 -2119 5689 5351 785 230 37 34 chr3 104453536 104454148 -113583010 - L1MC4 LINE L1 -548 7494 6722 383 275 0 13 chr3 104454182 104454199 -113582959 - L1MA10 LINE L1 -2 6332 6316 3071 235 42 31 chr3 104454199 104454860 -113582298 - L1ME2 LINE L1 -9 6155 5503 2149 118 13 10 chr3 104454860 104455164 -113581994 - AluSx SINE Alu -7 305 1 3071 235 42 31 chr3 104455164 104455425 -113581733 - L1ME2 LINE L1 -661 5503 5246 2411 60 10 0 chr3 104455425 104455724 -113581434 + AluY SINE Alu 1 302 -9 3071 235 42 31 chr3 104455724 104455970 -113581188 - L1ME2 LINE L1 -918 5246 4989 2761 134 12 2 chr3 104456439 104456863 -113580295 - MSTA LTR MaLR 0 428 1 1090 167 35 70 chr3 104456910 104456956 -113580202 - MER20 DNA MER1_type 0 219 173 1956 154 35 53 chr3 104456956 104457353 -113579805 - MLT1B LTR MaLR 0 390 1 1090 167 35 70 chr3 104457353 104457533 -113579625 - MER20 DNA MER1_type -46 173 1 445 202 43 11 chr3 104457814 104457908 -113579250 - L1MC4 LINE L1 -1452 6590 6494 348 24 0 0 chr3 104457916 104457957 -113579201 + (TG)n Simple_repeat Simple_repeat 1 41 0 196 333 141 10 chr3 104458986 104459085 -113578073 + MIR SINE MIR 34 145 -63 401 321 71 6 chr3 104461028 104461196 -113575962 + MIR SINE MIR 20 198 -64 1970 108 4 0 chr3 104461316 104461574 -113575584 - AluSx SINE Alu -53 259 1 321 267 292 12 chr3 104461643 104461804 -113575354 - L2 LINE L2 -5 3308 3103 3189 223 23 2 chr3 104461821 104462461 -113574697 - L1M2c LINE L1 -4988 1801 1148 574 288 7 13 chr3 104462465 104462618 -113574540 - L2 LINE L2 -239 3074 2923 2016 181 38 28 chr3 104462618 104463160 -113573998 - MLT2A1 LTR ERVL 0 554 1 707 231 31 6 chr3 104463173 104463333 -113573825 + MER58A DNA MER1_type 12 175 -49 3216 113 10 53 chr3 104463333 104463915 -113573243 + L1MA9 LINE L1 5725 6281 -31 249 200 46 46 chr3 104463978 104464043 -113573115 + MER58A DNA MER1_type 160 224 0 26 0 0 0 chr3 104464117 104464143 -113573015 + AT_rich Low_complexity Low_complexity 1 26 0 187 323 81 0 chr3 104464736 104464835 -113572323 + MIR SINE MIR 56 162 -100 4077 146 77 22 chr3 104465740 104466541 -113570617 - L1MA7 LINE L1 0 6291 5447 1963 189 53 33 chr3 104466948 104469063 -113568095 + L1M1 LINE L1 8 2080 -4407 3615 25 7 5 chr3 104469063 104469498 -113567660 + L1PA4 LINE L1 5717 6152 -3 1963 189 53 33 chr3 104469498 104471398 -113565760 + L1M1 LINE L1 2080 3941 -2546 2022 131 3 0 chr3 104471398 104471707 -113565451 + AluSx SINE Alu 1 310 0 1963 189 53 33 chr3 104471707 104472823 -113564335 + L1M1 LINE L1 3941 5398 -1089 650 186 31 0 chr3 104472823 104472952 -113564206 - L1PA16 LINE L1 -10 6156 6024 1963 189 53 33 chr3 104472952 104473410 -113563748 + L1M1 LINE L1 5398 5846 -641 * 3534 196 24 17 chr3 104473408 104474170 -113562988 + L1PA15 LINE L1 3259 4025 -2121 5550 128 19 1 chr3 104474170 104475147 -113562011 + L1PA15 LINE L1 5171 6165 0 1211 97 0 0 chr3 104475210 104475385 -113561773 + L1MA3 LINE L1 6131 6305 0 41610 44 3 1 chr3 104475393 104481536 -113555622 + L1PA4 LINE L1 1 6152 -3 847 173 61 0 chr3 104481576 104481773 -113555385 + L1 LINE L1 5155 5363 -783 497 262 78 59 chr3 104481790 104482046 -113555112 + L1M2 LINE L1 370 630 -6579 615 314 13 20 chr3 104482090 104482357 -113554801 + L1PB4 LINE L1 204 800 -6409 300 341 73 0 chr3 104482550 104482632 -113554526 + L1PB4 LINE L1 1079 1166 -6043 2924 239 35 13 chr3 104482635 104483350 -113553808 + L1PB4 LINE L1 1343 2073 -5136 12451 195 22 26 chr3 104483379 104487771 -113549387 + L1PB4 LINE L1 2840 7216 -2 1923 153 0 3 chr3 104487772 104488111 -113549047 + L1MA4 LINE L1 5353 5690 -610 1189 196 6 75 chr3 104488107 104488469 -113548689 + L1MA4 LINE L1 5964 6300 0 * 22 0 0 0 chr3 104489154 104489176 -113547982 + AT_rich Low_complexity Low_complexity 1 22 0 318 306 19 21 chr3 104489441 104489584 -113547574 + MIR3 SINE MIR 60 204 -4 180 219 0 0 chr3 104490300 104490341 -113546817 + GA-rich Low_complexity Low_complexity 5 45 0 915 228 5 27 chr3 104490660 104490884 -113546274 - MER20 DNA MER1_type 0 219 1 315 309 66 20 chr3 104492395 104492547 -113544611 - MER117 DNA MER1_type -15 182 24 1554 171 30 56 chr3 104493353 104493657 -113543501 + AluJo SINE Alu 3 298 -14 672 311 161 14 chr3 104493928 104494469 -113542689 - L3 LINE CR1 -557 1020 344 22 0 0 0 chr3 104496121 104496143 -113541015 + AT_rich Low_complexity Low_complexity 1 22 0 334 157 24 12 chr3 104496173 104496256 -113540902 + CT-rich Low_complexity Low_complexity 2 85 0 234 316 76 0 chr3 104496261 104496340 -113540818 - L2 LINE L2 -1 3271 3187 228 291 0 12 chr3 104498904 104498990 -113538168 + CT-rich Low_complexity Low_complexity 3 87 0 473 143 0 11 chr3 104498998 104499089 -113538069 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 809 246 5 0 chr3 104499134 104499321 -113537837 - AluJb SINE Alu -8 304 117 41386 47 1 1 chr3 104499321 104505456 -113531702 - L1PA3 LINE L1 -17 6138 7 741 164 23 0 chr3 104505463 104505591 -113531567 - AluJb SINE Alu -180 132 2 197 262 78 78 chr3 104505593 104505696 -113531462 + L2 LINE L2 2555 2657 -657 612 211 123 59 chr3 104505878 104506082 -113531076 - MER20 DNA MER1_type -2 217 1 250 333 42 25 chr3 104506237 104506357 -113530801 - L2 LINE L2 -345 2968 2847 322 270 131 102 chr3 104506440 104507028 -113530130 - L2 LINE L2 -2619 695 91 2109 172 47 38 chr3 104508668 104509138 -113528020 + MER74A LTR ERVL 1 474 -84 1986 150 71 30 chr3 104509139 104509649 -113527509 + MLT2A2 LTR ERVL 1 554 0 448 134 73 0 chr3 104509649 104509730 -113527428 + MER74A LTR ERVL 471 557 -1 1886 133 104 0 chr3 104510075 104510422 -113526736 - Tigger4(Zombi) DNA MER2_type -3 2728 2346 8114 135 19 3 chr3 104510437 104511778 -113525380 - Tigger4(Zombi) DNA MER2_type -799 1932 571 1923 190 41 31 chr3 104511772 104512162 -113524996 - Tigger4(Zombi) DNA MER2_type -2337 394 1 * 456 234 16 57 chr3 104513307 104513431 -113523727 + MER5B DNA MER1_type 1 119 -59 257 125 0 21 chr3 104513432 104513480 -113523678 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 1937 179 0 0 chr3 104513480 104513792 -113523366 - AluSx SINE Alu 0 312 1 197 213 16 98 chr3 104513793 104513854 -113523304 + MER5B DNA MER1_type 123 178 0 7222 88 1 1 chr3 104513909 104513926 -113523232 - L1P LINE L1 -5129 1017 1001 3140 26 49 0 chr3 104513926 104514313 -113522845 - L1PA4 LINE L1 0 6155 5750 7222 88 1 1 chr3 104514313 104515312 -113521846 - L1P LINE L1 -5144 1002 1 183 42 0 0 chr3 104517422 104517446 -113519712 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 52 30 0 0 chr3 104518056 104518122 -113519036 + AT_rich Low_complexity Low_complexity 1 66 0 2081 148 0 0 chr3 104518216 104518514 -113518644 - AluSx SINE Alu -14 298 1 292 222 17 26 chr3 104518526 104518539 -113518619 - L1MA10 LINE L1 -3 6331 6319 577 226 53 26 chr3 104518539 104518729 -113518429 - L1ME1 LINE L1 -5 6161 5967 2202 199 79 2 chr3 104518759 104519382 -113517776 - L1ME1 LINE L1 -336 5830 5170 300 264 236 20 chr3 104519443 104519591 -113517567 - L2 LINE L2 -207 3106 2927 2701 186 22 17 chr3 104519597 104520096 -113517062 + MLT2B3 LTR ERVL 3 507 -47 514 0 15 15 chr3 104520096 104520163 -113516995 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 2701 186 22 17 chr3 104520163 104520202 -113516956 + MLT2B3 LTR ERVL 507 544 -10 561 328 20 25 chr3 104520220 104520424 -113516734 - L2 LINE L2 -397 2917 2715 187 100 25 25 chr3 104520424 104520464 -113516694 + (TA)n Simple_repeat Simple_repeat 2 41 0 303 243 0 87 chr3 104520472 104520575 -113516583 - L1MC4 LINE L1 -1339 6703 6610 * 305 235 71 0 chr3 104520544 104520629 -113516529 - L1MC4 LINE L1 -1339 6703 6613 498 188 0 0 chr3 104520714 104520815 -113516343 + (TA)n Simple_repeat Simple_repeat 1 101 0 324 0 0 0 chr3 104520817 104520853 -113516305 + (TC)n Simple_repeat Simple_repeat 1 36 0 762 332 210 4 chr3 104520865 104521389 -113515769 - L2 LINE L2 -626 2688 2057 321 184 26 138 chr3 104521635 104521787 -113515371 + L1ME3A LINE L1 4081 4215 -1931 32 57 0 0 chr3 104521976 104522029 -113515129 + AT_rich Low_complexity Low_complexity 1 53 0 678 291 89 46 chr3 104522064 104522738 -113514420 + L1ME3A LINE L1 4530 5232 -914 666 280 58 10 chr3 104522880 104523238 -113513920 + L1ME3A LINE L1 5260 5635 -535 342 285 188 16 chr3 104523295 104523481 -113513677 + L1ME3A LINE L1 5731 5948 -222 380 123 0 0 chr3 104523747 104523804 -113513354 + AluS SINE Alu 1 57 -242 180 219 0 0 chr3 104523857 104523898 -113513260 + (CTA)n Simple_repeat Simple_repeat 2 42 0 736 268 16 22 chr3 104523940 104524123 -113513035 - MIR SINE MIR -50 212 31 254 81 0 0 chr3 104524151 104524188 -113512970 + tRNA-Cys-TGC tRNA tRNA 2 38 -37 221 250 0 0 chr3 104524319 104524367 -113512791 + (TATATG)n Simple_repeat Simple_repeat 5 52 0 272 273 13 0 chr3 104524582 104524659 -113512499 + Tigger8 DNA MER2_type 583 660 -6 672 213 10 61 chr3 104525813 104526010 -113511148 + LTR41 LTR ERVL 1 187 -586 397 242 51 51 chr3 104526237 104526415 -113510743 + LTR41 LTR ERVL 584 761 -12 324 350 89 19 chr3 104527661 104527818 -113509340 + MIR3 SINE MIR 8 175 -33 654 319 69 48 chr3 104529200 104529954 -113507204 - L2 LINE L2 0 3313 2541 249 330 214 0 chr3 104530056 104530168 -113506990 - MIR3 SINE MIR -38 170 35 5052 176 29 10 chr3 104530439 104531888 -113505270 + L1MA4 LINE L1 4824 6300 0 414 0 0 0 chr3 104532317 104532363 -113504795 + (TA)n Simple_repeat Simple_repeat 2 47 0 2198 79 43 0 chr3 104532962 104533240 -113503918 - AluSg SINE Alu -20 290 1 487 335 11 45 chr3 104534252 104534521 -113502637 - MIR SINE MIR 0 262 3 203 317 133 0 chr3 104534844 104534964 -113502194 - L3 LINE CR1 -1 1576 1441 415 240 73 26 chr3 104535757 104535949 -113501209 + L1M4 LINE L1 3792 3992 -2154 * 1093 141 0 0 chr3 104535942 104536112 -113501046 - L1MA1 LINE L1 -566 5736 5567 4015 79 3 14 chr3 104536112 104536681 -113500477 + L1MA1 LINE L1 5739 6302 0 1787 86 4 0 chr3 104536707 104536963 -113500195 + L1MA1 LINE L1 6046 6302 0 2000 121 63 30 chr3 104537014 104537377 -113499781 - THE1C LTR MaLR 0 375 1 550 307 109 19 chr3 104537542 104537956 -113499202 + L1M4 LINE L1 4238 4688 -1458 389 168 73 11 chr3 104538167 104538278 -113498880 - L1ME3A LINE L1 -223 5941 5824 2364 62 0 10 chr3 104538296 104538588 -113498570 - AluY SINE Alu -22 289 1 1259 234 68 39 chr3 104538599 104539013 -113498145 - L1ME3A LINE L1 -410 5756 5331 427 217 121 51 chr3 104539046 104539203 -113497955 - L1ME3A LINE L1 -2065 4081 3914 222 186 0 34 chr3 104539240 104539299 -113497859 + (TA)n Simple_repeat Simple_repeat 2 58 0 1257 253 60 44 chr3 104539308 104539707 -113497451 - L1M4 LINE L1 -918 5228 4818 441 0 0 0 chr3 104539707 104539756 -113497402 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 1257 253 60 44 chr3 104539756 104539835 -113497323 - L1M4 LINE L1 -1328 4818 4742 554 266 53 28 chr3 104539884 104540166 -113496992 - L1M4 LINE L1 -3478 2668 2380 263 85 21 0 chr3 104540181 104540228 -113496930 + (TA)n Simple_repeat Simple_repeat 1 48 0 315 0 0 0 chr3 104540231 104540266 -113496892 + (TC)n Simple_repeat Simple_repeat 2 36 0 243 0 0 0 chr3 104540265 104540292 -113496866 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 19127 177 20 6 chr3 104540301 104543737 -113493421 + L1 LINE L1 12 3497 -4068 189 0 0 0 chr3 104543841 104543862 -113493296 + (TA)n Simple_repeat Simple_repeat 2 22 0 30 45 0 0 chr3 104545070 104545114 -113492044 + AT_rich Low_complexity Low_complexity 1 44 0 612 159 3 5 chr3 104545123 104545251 -113491907 + L1 LINE L1 6334 6460 -1105 270 250 28 0 chr3 104545244 104545316 -113491842 + L1MC5 LINE L1 7710 7783 -178 * 22 0 0 0 chr3 104545406 104545428 -113491730 + AT_rich Low_complexity Low_complexity 1 22 0 812 181 0 0 chr3 104545428 104545561 -113491597 - AluJo SINE Alu -176 136 4 396 250 36 79 chr3 104549687 104549722 -113487436 + MIR3 SINE MIR 65 100 -108 1865 139 62 31 chr3 104549722 104550075 -113487083 + THE1B LTR MaLR 1 364 0 11201 98 13 3 chr3 104550075 104551640 -113485518 + THE1B-int LTR MaLR 1 1580 0 2029 121 65 42 chr3 104551640 104551954 -113485204 + THE1B LTR MaLR 1 325 -39 1951 137 0 39 chr3 104551954 104552260 -113484898 - AluSg SINE Alu -16 294 1 2029 121 65 42 chr3 104552260 104552301 -113484857 + THE1B LTR MaLR 325 364 0 396 250 36 79 chr3 104552301 104552403 -113484755 + MIR3 SINE MIR 97 198 -10 2126 204 59 42 chr3 104553490 104553996 -113483162 - MLT2B1 LTR ERVL -5 515 1 274 227 188 0 chr3 104554311 104554439 -113482719 - L1ME4a LINE L1 -14 6107 5956 21 36 0 0 chr3 104554670 104554698 -113482460 + AT_rich Low_complexity Low_complexity 1 28 0 733 250 80 0 chr3 104555581 104555793 -113481365 + MIR SINE MIR 34 262 0 404 293 63 37 chr3 104555922 104556113 -113481045 - MIR SINE MIR -10 252 57 213 310 123 59 chr3 104557368 104557945 -113479213 + L2 LINE L2 2193 2806 -508 264 279 0 13 chr3 104558200 104558279 -113478879 + (TTCA)n Simple_repeat Simple_repeat 2 79 0 573 239 72 50 chr3 104558285 104558507 -113478651 - L2 LINE L2 -6 3307 3081 1225 189 46 105 chr3 104558508 104558878 -113478280 - MLT1A1 LTR MaLR -17 348 1 243 284 15 0 chr3 104558878 104558945 -113478213 - L2 LINE L2 -230 3083 3016 212 349 23 0 chr3 104558978 104559107 -113478051 - L2 LINE L2 -811 2503 2372 200 276 10 71 chr3 104559766 104559864 -113477294 + MIR SINE MIR 88 179 -83 182 283 162 20 chr3 104560164 104560263 -113476895 + L2 LINE L2 3199 3311 -2 309 371 53 7 chr3 104561178 104561329 -113475829 + MIR3 SINE MIR 36 193 -15 1949 121 56 25 chr3 104563147 104563503 -113473655 - THE1C LTR MaLR 0 375 9 225 175 88 0 chr3 104563766 104563823 -113473335 + (CATATA)n Simple_repeat Simple_repeat 4 65 0 23 54 0 0 chr3 104563956 104563993 -113473165 + AT_rich Low_complexity Low_complexity 1 37 0 290 237 66 13 chr3 104564596 104564672 -113472486 - L2 LINE L2 -9 3263 3184 776 219 11 11 chr3 104564834 104565012 -113472146 + MER5B DNA MER1_type 1 178 0 308 352 47 23 chr3 104565070 104565198 -113471960 + L2 LINE L2 3142 3272 0 234 0 0 0 chr3 104565630 104565656 -113471502 + (TG)n Simple_repeat Simple_repeat 2 27 0 1309 235 17 56 chr3 104566494 104566906 -113470252 - L1M1 LINE L1 -5273 761 366 685 333 20 39 chr3 104567596 104567953 -113469205 - L1M1 LINE L1 -5600 355 6 515 376 83 46 chr3 104568139 104568820 -113468338 + L2 LINE L2 2566 3272 0 265 242 137 57 chr3 104568830 104568954 -113468204 - MLT1J LTR MaLR 0 511 378 1056 180 55 122 chr3 104569022 104569103 -113468055 + MLT1B LTR MaLR 43 128 -262 1366 212 94 21 chr3 104569103 104569443 -113467715 + MLT1A1 LTR MaLR 1 365 0 1056 180 55 122 chr3 104569443 104569722 -113467436 + MLT1B LTR MaLR 128 379 -11 407 300 90 41 chr3 104569750 104570040 -113467118 - MLT1J LTR MaLR -202 309 6 2825 204 8 0 chr3 104571126 104571642 -113465516 + MLT2B1 LTR ERVL 1 520 0 325 330 144 5 chr3 104571713 104571928 -113465230 - MIR SINE MIR -11 251 7 410 322 60 22 chr3 104571951 104572134 -113465024 + MIR SINE MIR 3 192 -70 241 236 45 91 chr3 104573600 104573710 -113463448 + Charlie7 DNA MER1_type 1 105 -2507 * 566 178 39 39 chr3 104573686 104573866 -113463292 + Charlie7 DNA MER1_type 2431 2610 -2 1551 243 20 38 chr3 104575541 104575600 -113461558 - MER39 LTR ERV1 0 707 648 3195 92 16 0 chr3 104575600 104576037 -113461121 - MLT2A1 LTR ERVL 0 444 1 1551 243 20 38 chr3 104576037 104576426 -113460732 - MER39 LTR ERV1 -59 648 267 1566 201 91 38 chr3 104576487 104576829 -113460329 + MLT2D LTR ERVL 8 330 -84 186 43 0 0 chr3 104576829 104576852 -113460306 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 369 0 0 0 chr3 104576851 104576892 -113460266 + (TG)n Simple_repeat Simple_repeat 2 42 0 1566 201 91 38 chr3 104576852 104576922 -113460236 + MLT2D LTR ERVL 330 400 -14 1995 148 0 0 chr3 104580078 104580361 -113456797 - AluSx SINE Alu -29 283 1 336 102 0 0 chr3 104580960 104581009 -113456149 + (CA)n Simple_repeat Simple_repeat 2 50 0 486 303 81 16 chr3 104581038 104581223 -113455935 + MIR3 SINE MIR 2 198 -10 2366 155 44 2 chr3 104581976 104582382 -113454776 - MSTA LTR MaLR 0 428 6 2186 177 32 15 chr3 104582562 104582963 -113454195 - MLT1C LTR MaLR 0 467 60 220 343 0 0 chr3 104583709 104583782 -113453376 - MIR SINE MIR -26 236 164 728 315 32 12 chr3 104583937 104584188 -113452970 - MIR SINE MIR -1 261 6 187 274 20 0 chr3 104584507 104584558 -113452600 + MIR SINE MIR 100 151 -57 22 35 0 0 chr3 104584576 104584605 -113452553 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr3 104584774 104584809 -113452349 + AT_rich Low_complexity Low_complexity 1 35 0 804 11 0 0 chr3 104584979 104585072 -113452086 - L1PA3 LINE L1 -3 6152 6060 11990 28 4 0 chr3 104585072 104587156 -113450002 + L1PA3 LINE L1 3954 6044 -111 303 28 0 0 chr3 104587327 104587363 -113449795 + (TG)n Simple_repeat Simple_repeat 1 36 0 21 57 0 0 chr3 104587730 104587765 -113449393 + AT_rich Low_complexity Low_complexity 1 35 0 319 283 77 118 chr3 104588465 104588866 -113448292 - L1M4 LINE L1 -784 5362 4995 4057 78 4 4 chr3 104588866 104589420 -113447738 - L1PB1 LINE L1 -1 6150 5597 319 283 77 118 chr3 104589420 104589655 -113447503 - L1M4 LINE L1 -1151 4995 4752 674 214 73 31 chr3 104589659 104589851 -113447307 - L1PA15 LINE L1 -7 6158 5959 * 23752 49 2 5 chr3 104589828 104589860 -113447298 - L1P LINE L1 -3183 2963 2932 4395 37 24 0 chr3 104589860 104590407 -113446751 - L1PA4 LINE L1 -3 6152 5593 23752 49 2 5 chr3 104590407 104593346 -113443812 - L1P LINE L1 -3214 2932 1 37 76 0 0 chr3 104594291 104594370 -113442788 + AT_rich Low_complexity Low_complexity 1 79 0 1510 195 10 30 chr3 104594642 104594945 -113442213 + AluJo SINE Alu 1 297 -15 24 53 0 0 chr3 104594963 104595001 -113442157 + AT_rich Low_complexity Low_complexity 1 38 0 349 308 49 36 chr3 104596062 104596252 -113440906 + MIR3 SINE MIR 15 212 -50 378 0 0 0 chr3 104597094 104597136 -113440022 + (TG)n Simple_repeat Simple_repeat 1 42 0 1124 209 92 42 chr3 104598003 104598347 -113438811 + MLT1A1 LTR MaLR 2 365 0 26 0 0 0 chr3 104598633 104598659 -113438499 + AT_rich Low_complexity Low_complexity 1 26 0 332 288 36 0 chr3 104599052 104599191 -113437967 - L1ME4a LINE L1 0 6121 5978 2336 132 19 8 chr3 104599286 104599657 -113437501 + THE1C LTR MaLR 1 375 0 10083 119 43 5 chr3 104599657 104601178 -113435980 + THE1C-int LTR MaLR 1 1580 0 2380 125 11 16 chr3 104601178 104601555 -113435603 + THE1C LTR MaLR 1 375 0 228 304 0 29 chr3 104601834 104601903 -113435255 + MIR SINE MIR 33 99 -109 609 361 22 11 chr3 104602692 104602966 -113434192 - L3b LINE CR1 -178 1405 1129 185 273 65 13 chr3 104603431 104603508 -113433650 - L2 LINE L2 -5 3308 3228 1414 278 71 62 chr3 104604373 104604953 -113432205 + L1MEc LINE L1 829 1403 -4993 294 29 0 0 chr3 104604953 104604988 -113432170 + (GA)n Simple_repeat Simple_repeat 2 36 0 1414 278 71 62 chr3 104604988 104605831 -113431327 + L1MEc LINE L1 1403 2264 -4132 786 114 57 29 chr3 104605888 104606063 -113431095 + L1MA4 LINE L1 6113 6292 -8 1054 292 60 26 chr3 104606232 104606976 -113430182 + L1MEc LINE L1 2398 3232 -2983 1882 171 116 16 chr3 104606976 104607363 -113429795 - MSTA LTR MaLR -2 426 1 1054 292 60 26 chr3 104607363 104607615 -113429543 + L1MEc LINE L1 3232 3474 -2741 1137 153 42 114 chr3 104607625 104607932 -113429226 + THE1C LTR MaLR 91 375 0 8226 152 48 51 chr3 104607934 104609516 -113427642 + MSTA-int LTR MaLR 3 1580 0 1663 168 171 11 chr3 104609516 104609885 -113427273 + MSTA LTR MaLR 1 428 0 2227 178 19 28 chr3 104609913 104610137 -113427021 - MSTA LTR MaLR 0 428 208 2027 145 21 43 chr3 104610137 104610509 -113426649 + THE1B LTR MaLR 1 364 0 2227 178 19 28 chr3 104610509 104610716 -113426442 - MSTA LTR MaLR -220 208 1 8583 175 51 2 chr3 104610716 104612291 -113424867 - MSTA-int LTR MaLR 0 1651 1 2157 162 38 24 chr3 104612291 104612710 -113424448 - MSTA LTR MaLR 0 428 4 2998 252 70 25 chr3 104612713 104613978 -113423180 + L1MEc LINE L1 3822 5143 -1072 574 280 103 40 chr3 104613983 104614421 -113422737 + MLT1D LTR MaLR 2 465 -2 493 208 97 22 chr3 104614426 104614652 -113422506 + L1MEc LINE L1 5147 5389 -826 13417 191 34 14 chr3 104614665 104618563 -113418595 + L1PA15 LINE L1 14 3832 -3752 1621 70 5 0 chr3 104618563 104618778 -113418380 - L1PA7 LINE L1 0 6154 5939 13417 191 34 14 chr3 104618778 104620197 -113416961 + L1PA15 LINE L1 3832 5221 -2363 225 0 0 0 chr3 104620197 104620222 -113416936 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 13417 191 34 14 chr3 104620222 104620777 -113416381 + L1PA15 LINE L1 5221 5763 -1821 6159 108 25 0 chr3 104620777 104621860 -113415298 - L1PA11 LINE L1 -6 6168 5071 13417 191 34 14 chr3 104621860 104622764 -113414394 + L1PA15 LINE L1 5763 7584 0 401 186 110 51 chr3 104622772 104622890 -113414268 + L1ME2 LINE L1 6018 6142 -22 9517 238 33 86 chr3 104622916 104626390 -113410768 + L1PA12 LINE L1 17 3306 -4278 1317 124 10 0 chr3 104626369 104626571 -113410587 + L1PA15 LINE L1 6824 7027 -576 * 1801 47 26 4 chr3 104626577 104626810 -113410348 - L1PA4 LINE L1 -3 6152 5915 3408 145 2 25 chr3 104626810 104627402 -113409756 + L1PA15 LINE L1 7024 7602 -1 487 335 11 45 chr3 104628440 104628709 -113408449 - MIR SINE MIR 0 262 3 203 317 133 0 chr3 104629033 104629153 -113408005 - L3 LINE CR1 -1 1576 1441 431 237 79 21 chr3 104629947 104630137 -113407021 + L1M4 LINE L1 3792 3992 -2154 * 658 159 0 9 chr3 104630130 104630243 -113406915 - L1M1 LINE L1 -566 5736 5625 22 0 0 0 chr3 104630320 104630342 -113406816 + AT_rich Low_complexity Low_complexity 1 22 0 812 181 0 0 chr3 104630342 104630475 -113406683 - AluJo SINE Alu -176 136 4 3676 173 42 22 chr3 104633574 104634401 -113402757 + L1MA4 LINE L1 5457 6300 0 468 0 0 0 chr3 104634829 104634881 -113402277 + (TA)n Simple_repeat Simple_repeat 2 53 0 24 67 0 0 chr3 104636189 104636234 -113400924 + AT_rich Low_complexity Low_complexity 1 45 0 56 0 0 0 chr3 104636275 104636331 -113400827 + AT_rich Low_complexity Low_complexity 1 56 0 243 0 0 0 chr3 104636360 104636387 -113400771 + (T)n Simple_repeat Simple_repeat 1 27 0 8312 40 0 0 chr3 104636387 104638172 -113398986 - L1PA5 LINE L1 0 6154 4364 689 273 126 24 chr3 104638181 104638683 -113398475 + Charlie7 DNA MER1_type 2012 2564 -48 3344 150 16 9 chr3 104638736 104639308 -113397850 - L1MA4 LINE L1 -282 6018 5443 2216 192 43 11 chr3 104639510 104639953 -113397205 + MER39 LTR ERV1 251 707 0 741 191 8 0 chr3 104640301 104640427 -113396731 - FLAM_C SINE Alu -12 131 5 369 284 57 57 chr3 104641577 104641771 -113395387 + L2 LINE L2 3114 3307 -6 213 154 0 0 chr3 104641775 104641814 -113395344 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 5070 146 17 30 chr3 104642434 104643295 -113393863 + L1MA6 LINE L1 5389 6239 -61 2036 109 4 0 chr3 104643295 104643569 -113393589 + AluSx SINE Alu 23 297 -15 5070 146 17 30 chr3 104643569 104643631 -113393527 + L1MA6 LINE L1 6239 6300 0 522 0 0 0 chr3 104643841 104643899 -113393259 + (TTTAG)n Simple_repeat Simple_repeat 3 60 0 1159 170 76 0 chr3 104644625 104644849 -113392309 + Tigger5 DNA MER2_type 2082 2322 -1 1029 203 10 19 chr3 104644878 104645085 -113392073 + MSTD LTR MaLR 1 205 -191 828 255 36 135 chr3 104645094 104645749 -113391409 + L2 LINE L2 2677 3276 -37 2854 182 5 17 chr3 104645784 104646367 -113390791 + L1P LINE L1 3155 3730 -2416 1665 188 0 0 chr3 104646363 104646682 -113390476 + L1P LINE L1 4881 5199 -947 * 345 24 0 0 chr3 104647354 104647396 -113389762 + (A)n Simple_repeat Simple_repeat 1 42 0 38 22 0 0 chr3 104647424 104647469 -113389689 + AT_rich Low_complexity Low_complexity 1 45 0 522 253 112 66 chr3 104647486 104647878 -113389280 - Charlie7 DNA MER1_type -612 2000 1591 279 200 93 79 chr3 104647894 104648034 -113389124 - Charlie7 DNA MER1_type -2431 181 40 707 283 164 45 chr3 104648049 104648469 -113388689 + LTR50 LTR ERVL 1 470 -325 468 302 54 9 chr3 104648462 104648684 -113388474 + LTR33A LTR ERVL 292 523 0 * 459 316 55 13 chr3 104648816 104649323 -113387835 + L1ME LINE L1 5011 5537 -629 275 49 24 0 chr3 104649605 104649646 -113387512 + (CAA)n Simple_repeat Simple_repeat 1 42 0 781 336 70 12 chr3 104649757 104650173 -113386985 - MLT1L LTR MaLR -162 453 14 483 196 0 0 chr3 104653160 104653262 -113383896 + L1MA8 LINE L1 6184 6285 -6 418 323 69 87 chr3 104653775 104654460 -113382698 - L2 LINE L2 0 3272 2583 1609 177 143 31 chr3 104654909 104655328 -113381830 + MLT1C LTR MaLR 1 466 -1 2174 106 7 0 chr3 104655447 104655739 -113381419 - AluSx SINE Alu -18 294 1 23 0 0 0 chr3 104656211 104656234 -113380924 + AT_rich Low_complexity Low_complexity 1 23 0 302 288 115 22 chr3 104656934 104657073 -113380085 + MIR3 SINE MIR 14 165 -43 22 35 0 0 chr3 104658063 104658092 -113379066 + AT_rich Low_complexity Low_complexity 1 29 0 350 200 187 20 chr3 104658186 104658336 -113378822 + MER53 DNA DNA 15 189 0 356 258 8 89 chr3 104658586 104658710 -113378448 + L2 LINE L2 3200 3313 0 805 216 11 11 chr3 104659626 104659807 -113377351 + L1MB2 LINE L1 5925 6105 -66 2435 51 3 0 chr3 104659866 104660162 -113376996 + AluY SINE Alu 1 297 -14 184 184 79 0 chr3 104660217 104660255 -113376903 - L2 LINE L2 0 3272 3232 1305 58 0 0 chr3 104660344 104660532 -113376626 + AluY SINE Alu 129 316 0 441 93 13 53 chr3 104660745 104660820 -113376338 - MER51A LTR ERV1 -3 631 560 1025 169 35 88 chr3 104660821 104661240 -113375918 - MER51A LTR ERV1 -20 614 1 1598 196 37 25 chr3 104661241 104661567 -113375591 - MER51A-int LTR ERV1 0 7816 7487 404 284 54 46 chr3 104661727 104661988 -113375170 - MER52-int LTR ERV1 -1810 4866 4604 368 243 10 3 chr3 104662618 104662726 -113374432 - MER52-int LTR ERV1 -5280 1811 1684 243 139 0 0 chr3 104662806 104662849 -113374309 - MLT2A1 LTR ERVL -8 436 394 192 125 0 0 chr3 104662854 104662886 -113374272 + (TA)n Simple_repeat Simple_repeat 2 33 0 7698 79 7 6 chr3 104662895 104663902 -113373256 - HERVL-A1 LTR ERVL -472 5182 4175 1421 65 76 0 chr3 104663901 104664085 -113373073 - HERVL-A1 LTR ERVL -2144 3510 3313 * 7919 81 3 31 chr3 104664083 104665177 -113371981 - HERVL-A1 LTR ERVL -3580 2074 1012 5345 86 0 6 chr3 104665182 104665880 -113371278 - HERVL-A1 LTR ERVL -4960 694 1 3086 83 35 14 chr3 104665880 104665916 -113371242 - MLT2A1 LTR ERVL 0 444 410 454 0 0 85 chr3 104665916 104666010 -113371148 + (TA)n Simple_repeat Simple_repeat 2 87 0 3086 83 35 14 chr3 104666010 104666408 -113370750 - MLT2A1 LTR ERVL -34 410 1 288 242 20 10 chr3 104666410 104666509 -113370649 - MER52-int LTR ERV1 -3335 950 851 574 205 12 62 chr3 104666714 104666875 -113370283 - MER52-int LTR ERV1 -7008 808 656 462 215 171 81 chr3 104667407 104667728 -113369430 + L1ME LINE L1 2881 3230 -2916 25 51 0 0 chr3 104667907 104667946 -113369212 + AT_rich Low_complexity Low_complexity 1 39 0 415 301 141 19 chr3 104668188 104668657 -113368501 + L1ME LINE L1 4019 4544 -1602 393 22 0 0 chr3 104668727 104668773 -113368385 + (TG)n Simple_repeat Simple_repeat 1 46 0 1693 174 91 0 chr3 104669369 104669742 -113367416 - MSTA LTR MaLR -21 407 1 282 300 84 63 chr3 104670021 104670368 -113366790 + L1ME LINE L1 5255 5608 -554 1694 192 130 29 chr3 104670368 104670821 -113366337 - MLT1D LTR MaLR 0 505 7 2343 124 14 33 chr3 104670999 104671363 -113365795 - THE1B LTR MaLR -7 357 1 183 129 0 0 chr3 104671447 104671478 -113365680 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 250 364 39 31 chr3 104671814 104671943 -113365215 + MIR SINE MIR 51 180 -82 1512 216 81 9 chr3 104673774 104674107 -113363051 + MLT1A1 LTR MaLR 1 357 -8 231 315 120 52 chr3 104674108 104674416 -113362742 + L2 LINE L2 1336 1664 -1650 401 343 83 16 chr3 104674474 104674786 -113362372 - L1M4 LINE L1 -763 5383 5051 472 319 65 73 chr3 104674811 104675209 -113361949 - L1M4 LINE L1 -1080 5066 4672 348 103 0 0 chr3 104675232 104675290 -113361868 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 9342 26 4 3 chr3 104675292 104677214 -113359944 - L1PA3 LINE L1 -9 6146 4222 338 125 45 57 chr3 104677327 104677415 -113359743 + L1MA8 LINE L1 6205 6291 0 201 356 115 19 chr3 104677655 104677759 -113359399 + L2 LINE L2 3134 3247 -25 559 335 25 0 chr3 104677854 104678057 -113359101 + L2 LINE L2 2679 2886 -428 3645 91 4 2 chr3 104678741 104679238 -113357920 - THE1A-int LTR MaLR -1082 498 1 1767 126 87 3 chr3 104679238 104679547 -113357611 - THE1A LTR MaLR 0 355 21 1019 184 7 92 chr3 104679932 104679966 -113357192 - MSTB2 LTR MaLR -2 455 420 2015 178 87 8 chr3 104679966 104680359 -113356799 + MSTA LTR MaLR 1 424 -4 1019 184 7 92 chr3 104680359 104680618 -113356540 - MSTB2 LTR MaLR -37 420 187 2939 60 0 0 chr3 104681138 104681506 -113355652 - L1P LINE L1 -1874 4272 3905 623 50 0 0 chr3 104681506 104681586 -113355572 + L1P LINE L1 3810 3889 -2257 * 7275 181 14 8 chr3 104681583 104683769 -113353389 - L1MA7 LINE L1 -209 6082 3883 863 209 209 48 chr3 104683795 104684130 -113353028 + MLT1E2 LTR MaLR 232 620 -6 201 213 0 0 chr3 104684133 104684180 -113352978 + (TA)n Simple_repeat Simple_repeat 2 48 0 311 314 87 31 chr3 104684180 104684409 -113352749 - L1M4c LINE L1 -4579 1984 1743 19629 174 29 32 chr3 104684452 104685968 -113351190 + L1M1 LINE L1 15 1533 -6032 294 29 0 0 chr3 104685968 104686003 -113351155 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 19629 174 29 32 chr3 104686003 104688556 -113348602 + L1M1 LINE L1 1533 4059 -3506 5896 103 15 40 chr3 104688556 104688771 -113348387 + L1MA1 LINE L1 5218 5437 -865 2198 119 3 0 chr3 104688771 104689064 -113348094 + AluSg SINE Alu 3 296 -14 5896 103 15 40 chr3 104689064 104689866 -113347292 + L1MA1 LINE L1 5437 6196 -106 32 43 0 0 chr3 104689866 104689912 -113347246 + AT_rich Low_complexity Low_complexity 1 46 0 676 302 33 26 chr3 104690069 104690496 -113346662 - L1M4c LINE L1 -4896 1488 1107 200 225 0 0 chr3 104690911 104690951 -113346207 + GA-rich Low_complexity Low_complexity 4 43 0 513 0 0 0 chr3 104690951 104691008 -113346150 + (TG)n Simple_repeat Simple_repeat 2 58 0 414 0 0 0 chr3 104691524 104691570 -113345588 + (T)n Simple_repeat Simple_repeat 1 46 0 23 0 0 0 chr3 104691590 104691613 -113345545 + GC_rich Low_complexity Low_complexity 1 23 0 44 0 0 0 chr3 104691673 104691717 -113345441 + GC_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr3 104691717 104691739 -113345419 + AT_rich Low_complexity Low_complexity 1 22 0 672 104 31 0 chr3 104692131 104692227 -113344931 + THE1B LTR MaLR 53 151 -213 221 274 0 0 chr3 104693444 104693495 -113343663 - L2 LINE L2 -5 3308 3258 2235 104 53 28 chr3 104693786 104694141 -113343017 + THE1B LTR MaLR 1 364 0 2134 263 16 31 chr3 104694401 104695053 -113342105 + L1MCc LINE L1 11 1001 -5421 39261 42 22 2 chr3 104695073 104700780 -113336378 - L1PA3 LINE L1 0 6155 332 2691 217 94 19 chr3 104700792 104702449 -113334709 + L1MCc LINE L1 993 2854 -4087 23 0 0 0 chr3 104702611 104702634 -113334524 + AT_rich Low_complexity Low_complexity 1 23 0 1744 158 4 4 chr3 104702798 104703076 -113334082 + AluSx SINE Alu 19 296 -16 339 44 0 0 chr3 104703157 104703202 -113333956 + (CA)n Simple_repeat Simple_repeat 2 46 0 6883 40 5 3 chr3 104703568 104704795 -113332363 + L1PA3 LINE L1 4879 6109 -46 219 218 26 26 chr3 104704995 104705073 -113332085 + GA-rich Low_complexity Low_complexity 3 80 0 2527 162 39 19 chr3 104705659 104706177 -113330981 - L1MA8 LINE L1 -6 6285 5758 4001 31 0 2 chr3 104706278 104706755 -113330403 - L1P LINE L1 -1766 4380 3905 380 123 0 31 chr3 104706746 104706811 -113330347 + L1P LINE L1 3804 3866 -2280 * 315 338 41 14 chr3 104707455 104707600 -113329558 + MIR SINE MIR 6 154 -108 376 333 65 90 chr3 104707735 104708134 -113329024 + L2 LINE L2 2884 3272 0 249 71 48 0 chr3 104708642 104708684 -113328474 - Alu SINE Alu -258 44 1 753 244 106 3 chr3 104708761 104709044 -113328114 - L1ME LINE L1 -599 5571 5260 1014 304 103 26 chr3 104709252 104710376 -113326782 - L1ME LINE L1 -1189 4957 3723 212 267 0 0 chr3 104710476 104710521 -113326637 + CT-rich Low_complexity Low_complexity 3 47 0 1363 84 9 89 chr3 104710695 104710909 -113326249 - THE1C LTR MaLR -178 197 1 10093 113 7 60 chr3 104710909 104712578 -113324580 - THE1C-int LTR MaLR 0 1580 1 2080 126 36 41 chr3 104712579 104712943 -113324215 - THE1C LTR MaLR -1 374 13 275 59 0 0 chr3 104712944 104712978 -113324180 - THE1C LTR MaLR -341 34 1 211 318 70 23 chr3 104713030 104713159 -113323999 + L2 LINE L2 2578 2712 -602 537 239 68 0 chr3 104713281 104713398 -113323760 - FLAM_A SINE Alu -6 127 3 197 328 75 15 chr3 104713570 104713704 -113323454 + L2 LINE L2 3167 3308 -5 207 0 0 0 chr3 104714368 104714391 -113322767 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 2211 114 0 0 chr3 104714445 104714734 -113322424 + AluSc SINE Alu 1 289 -20 274 212 20 0 chr3 104714793 104714892 -113322266 + (TA)n Simple_repeat Simple_repeat 2 102 0 518 277 79 5 chr3 104715020 104715222 -113321936 - L1ME3A LINE L1 -312 5858 5642 275 49 24 0 chr3 104715226 104715267 -113321891 + (TA)n Simple_repeat Simple_repeat 2 43 0 386 64 0 0 chr3 104715267 104715314 -113321844 - Alu SINE Alu -12 288 242 1873 185 158 49 chr3 104715615 104716064 -113321094 + MLT2B2 LTR ERVL 18 515 0 634 307 23 0 chr3 104716310 104716486 -113320672 + MIR SINE MIR 2 181 -81 1127 318 24 17 chr3 104717951 104718372 -113318786 + LTR16A LTR ERVL 27 450 0 798 313 49 25 chr3 104718380 104718812 -113318346 + HERV16 LTR ERVL 9 450 -4546 1762 331 31 2 chr3 104719021 104719631 -113317527 + HERV16 LTR ERVL 709 1336 -3660 1411 298 30 30 chr3 104719654 104720252 -113316906 + HERV16 LTR ERVL 1473 2066 -2930 2666 275 58 40 chr3 104720293 104721219 -113315939 + HERV16 LTR ERVL 2149 3091 -1905 481 348 106 16 chr3 104721340 104721596 -113315562 + HERV16 LTR ERVL 4062 4340 -1314 603 341 75 47 chr3 104721798 104721904 -113315254 + HERV16 LTR ERVL 4588 4690 -964 944 222 56 19 chr3 104721904 104722120 -113315038 + MER58A DNA MER1_type 1 224 0 603 341 75 47 chr3 104722120 104722693 -113314465 + HERV16 LTR ERVL 4690 5286 -368 900 321 127 12 chr3 104722906 104723324 -113313834 + L2 LINE L2 2838 3303 -10 395 321 106 38 chr3 104723524 104723761 -113313397 - MIR SINE MIR -4 258 6 394 230 35 0 chr3 104724523 104724610 -113312548 - Tigger5 DNA MER2_type 0 2323 2234 334 185 0 0 chr3 104724618 104724672 -113312486 - Tigger5 DNA MER2_type -2269 54 1 30 27 0 0 chr3 104724939 104724976 -113312182 + AT_rich Low_complexity Low_complexity 1 37 0 385 188 50 0 chr3 104725099 104725179 -113311979 - MLT1A2 LTR MaLR -290 84 1 424 340 19 9 chr3 104725182 104725394 -113311764 + MIR SINE MIR 49 262 0 42 36 0 0 chr3 104725757 104725813 -113311345 + AT_rich Low_complexity Low_complexity 1 56 0 340 296 48 10 chr3 104726911 104727117 -113310041 - L1MC5 LINE L1 -35 7926 7713 1180 183 125 48 chr3 104727144 104727537 -113309621 + Charlie1b DNA MER1_type 27 449 -74 4737 154 16 7 chr3 104727537 104728393 -113308765 + L1MA3 LINE L1 5342 6205 -100 23 33 0 0 chr3 104728423 104728453 -113308705 + AT_rich Low_complexity Low_complexity 1 30 0 236 224 52 0 chr3 104728453 104728511 -113308647 + Charlie1b DNA MER1_type 456 516 -7 2579 95 16 0 chr3 104728590 104728957 -113308201 - L1PA13 LINE L1 -1 6162 5790 373 171 57 0 chr3 104728958 104729046 -113308112 - L1P LINE L1 -2211 3935 3843 2433 67 0 0 chr3 104729945 104730242 -113306916 - AluY SINE Alu -14 297 1 510 165 10 52 chr3 104730383 104730480 -113306678 - MER2 DNA MER2_type -2 343 251 293 228 0 0 chr3 104730465 104730522 -113306636 + MER2 DNA MER2_type 65 121 -224 * 318 237 0 13 chr3 104730530 104730606 -113306552 - MER8 DNA MER2_type -164 75 1 249 377 61 0 chr3 104730860 104730974 -113306184 - L2 LINE L2 -213 3059 2939 796 320 123 16 chr3 104731510 104732251 -113304907 + L2 LINE L2 2496 3312 -1 211 326 61 10 chr3 104733179 104733277 -113303881 + MIR SINE MIR 153 255 -7 494 300 27 42 chr3 104733613 104733891 -113303267 + L1ME LINE L1 5444 5689 -432 270 0 0 0 chr3 104733900 104733930 -113303228 + (CA)n Simple_repeat Simple_repeat 1 30 0 34 72 0 0 chr3 104734046 104734115 -113303043 + AT_rich Low_complexity Low_complexity 1 69 0 487 279 86 77 chr3 104735701 104735934 -113301224 - MIR SINE MIR -23 239 5 4351 219 22 74 chr3 104736114 104736324 -113300834 + L1MD1 LINE L1 4231 4450 -1792 339 43 0 0 chr3 104736324 104736370 -113300788 - MADE1 DNA Mariner 0 80 35 4351 219 22 74 chr3 104736370 104736513 -113300645 + L1MD1 LINE L1 4450 4599 -1643 1843 117 25 11 chr3 104736513 104736796 -113300362 + AluSx SINE Alu 1 287 -25 4351 219 22 74 chr3 104736796 104738499 -113298659 + L1MD1 LINE L1 4599 6234 -8 1736 104 48 0 chr3 104738514 104738763 -113298395 - AluY SINE Alu -14 297 37 229 351 58 32 chr3 104738783 104738937 -113298221 + MIR3 SINE MIR 36 193 -15 209 281 62 0 chr3 104739952 104740016 -113297142 - L2 LINE L2 0 3313 3246 2527 162 28 50 chr3 104741567 104742103 -113295055 + LTR5 LTR ERVK 446 969 0 2318 274 42 39 chr3 104742136 104743031 -113294127 - L1MCb LINE L1 -5145 900 3 339 279 18 0 chr3 104743171 104743291 -113293867 + L1MC4 LINE L1 6841 7050 -865 2081 258 68 13 chr3 104743432 104744181 -113292977 + L1MC4 LINE L1 7096 7885 -157 22 35 0 0 chr3 104744633 104744662 -113292496 + AT_rich Low_complexity Low_complexity 1 29 0 344 277 62 99 chr3 104745744 104745986 -113291172 + MIR SINE MIR 21 253 -9 27 87 0 0 chr3 104746469 104746538 -113290620 + AT_rich Low_complexity Low_complexity 1 69 0 186 43 0 0 chr3 104749164 104749187 -113287971 + (TAA)n Simple_repeat Simple_repeat 2 24 0 4528 136 45 8 chr3 104750132 104750891 -113286267 - L1PB3 LINE L1 0 6154 5368 271 298 123 9 chr3 104751359 104751473 -113285685 + MIR SINE MIR 6 132 -130 326 212 15 15 chr3 104752173 104752239 -113284919 - MLT1F LTR MaLR -331 211 146 1227 207 5 109 chr3 104752346 104752742 -113284416 - L1MD2 LINE L1 -25 6334 5980 1670 206 45 45 chr3 104752845 104753174 -113283984 - L1MDa LINE L1 -4532 2008 1677 180 0 0 0 chr3 104753174 104753194 -113283964 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1670 206 45 45 chr3 104753194 104753355 -113283803 - L1MDa LINE L1 -4862 1678 1518 6206 186 27 93 chr3 104753388 104755470 -113281688 - L1PA7 LINE L1 0 6154 3874 1715 64 0 0 chr3 104755470 104755689 -113281469 - L1PA5 LINE L1 -5 6149 5931 6206 186 27 93 chr3 104755689 104757119 -113280039 - L1PA7 LINE L1 -2280 3874 2351 * 11315 189 38 51 chr3 104757102 104759498 -113277660 - L1M2 LINE L1 -4485 2364 1 333 47 0 0 chr3 104759679 104759722 -113277436 + (TG)n Simple_repeat Simple_repeat 2 44 0 299 333 20 0 chr3 104760970 104761069 -113276089 + L2 LINE L2 3116 3216 -56 252 0 0 0 chr3 104761866 104761894 -113275264 + (CA)n Simple_repeat Simple_repeat 1 28 0 2731 90 0 5 chr3 104761994 104762372 -113274786 + HSMAR1 DNA Mariner 1 376 -911 419 136 0 0 chr3 104762369 104762435 -113274723 + HSMAR1 DNA Mariner 489 554 -733 * 5168 15 0 5 chr3 104762443 104763071 -113274087 + L1PA2 LINE L1 5556 6155 0 318 293 78 24 chr3 104763096 104763263 -113273895 + MLT1F LTR MaLR 367 542 0 26 50 0 0 chr3 104763273 104763313 -113273845 + AT_rich Low_complexity Low_complexity 1 40 0 3962 217 47 24 chr3 104763550 104764259 -113272899 + HSMAR1 DNA Mariner 558 1282 -5 359 316 115 11 chr3 104764568 104764742 -113272416 + MIR SINE MIR 53 244 -18 286 335 48 28 chr3 104764844 104765069 -113272089 - MIR SINE MIR 0 262 34 5622 112 18 5 chr3 104765276 104766653 -113270505 + L1PA13 LINE L1 4788 6156 -7 552 100 0 0 chr3 104767266 104767346 -113269812 + MADE1 DNA Mariner 1 80 0 190 327 40 40 chr3 104768581 104768682 -113268476 + MER5B DNA MER1_type 1 101 -77 1157 148 59 0 chr3 104769012 104769215 -113267943 - L1PA10 LINE L1 0 6168 5954 350 244 8 124 chr3 104769478 104769611 -113267547 - MER5B DNA MER1_type -52 137 7 246 311 184 0 chr3 104769723 104769826 -113267332 - L2 LINE L2 0 3272 3151 225 279 198 9 chr3 104769882 104769993 -113267165 + MIR SINE MIR 47 178 -84 199 396 45 27 chr3 104770256 104770367 -113266791 - L2 LINE L2 -28 3244 3132 6924 15 8 0 chr3 104770637 104771432 -113265726 - L1PA3 LINE L1 0 6155 5355 6036 21 0 0 chr3 104771426 104772126 -113265032 - L1PA3 LINE L1 -1444 4702 4003 * 8314 35 0 0 chr3 104772123 104773147 -113264011 + L1PA3 LINE L1 2985 4008 -2138 2086 209 39 16 chr3 104773764 104774258 -113262900 - MLT1D LTR MaLR 0 505 1 29 60 0 0 chr3 104774532 104774582 -113262576 + AT_rich Low_complexity Low_complexity 1 50 0 876 230 5 29 chr3 104775656 104775865 -113261293 - MIR SINE MIR -43 219 16 2113 107 3 3 chr3 104779638 104779927 -113257231 - AluSp SINE Alu -13 300 12 1911 131 7 3 chr3 104780181 104780486 -113256672 - AluSq SINE Alu -7 306 1 1936 134 3 3 chr3 104780557 104780847 -113256311 - AluSx SINE Alu -11 301 12 183 227 23 0 chr3 104781085 104781129 -113256029 - L3 LINE CR1 -1200 377 333 * 257 174 0 0 chr3 104781112 104781158 -113256000 + L3b LINE CR1 1529 1574 -9 2271 111 0 7 chr3 104781588 104781894 -113255264 + AluSg SINE Alu 1 304 -6 189 306 0 16 chr3 104782154 104782216 -113254942 + MIR SINE MIR 32 92 -170 180 0 0 0 chr3 104782370 104782390 -113254768 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 404 244 164 52 chr3 104782452 104782702 -113254456 + L2 LINE L2 3036 3313 0 369 0 0 0 chr3 104784758 104784799 -113252359 + (TA)n Simple_repeat Simple_repeat 1 41 0 2284 128 120 5 chr3 104784845 104785229 -113251929 - MSTA LTR MaLR 0 428 1 28 38 0 19 chr3 104785438 104785471 -113251687 + AT_rich Low_complexity Low_complexity 1 34 -18 1612 197 10 14 chr3 104785471 104785765 -113251393 - AluJb SINE Alu -19 293 1 28 38 0 19 chr3 104785765 104785784 -113251374 + AT_rich Low_complexity Low_complexity 34 52 0 1504 186 12 0 chr3 104787265 104787507 -113249651 + AluJo SINE Alu 6 250 -62 231 322 93 22 chr3 104787545 104787721 -113249437 + MIR3 SINE MIR 15 206 -56 2144 113 3 3 chr3 104787965 104788265 -113248893 - AluSx SINE Alu -12 300 1 580 308 92 8 chr3 104788770 104789010 -113248148 - MIR SINE MIR 0 262 3 192 328 69 0 chr3 104790343 104790401 -113246757 - L2 LINE L2 -19 3253 3192 970 238 35 0 chr3 104791653 104791855 -113245303 + MER58A DNA MER1_type 6 214 -10 1201 290 136 27 chr3 104792098 104792716 -113244442 - L1ME LINE L1 -5211 994 280 224 30 30 0 chr3 104792716 104792749 -113244409 + (CAA)n Simple_repeat Simple_repeat 2 35 0 1201 290 136 27 chr3 104792749 104792875 -113244283 - L1ME LINE L1 -5925 280 169 515 357 15 19 chr3 104792967 104793292 -113243866 - L1ME LINE L1 -6029 367 44 25 0 0 0 chr3 104793300 104793325 -113243833 + AT_rich Low_complexity Low_complexity 1 25 0 3354 238 70 50 chr3 104793588 104795377 -113241781 + L1M2a LINE L1 1539 3290 -3877 1626 174 11 28 chr3 104795377 104795710 -113241448 + AluJb SINE Alu 7 334 0 3354 238 70 50 chr3 104795710 104796188 -113240970 + L1M2a LINE L1 3290 6397 -770 306 251 180 60 chr3 104796510 104796677 -113240481 + MER5A DNA MER1_type 3 189 0 30 59 0 0 chr3 104797466 104797517 -113239641 + AT_rich Low_complexity Low_complexity 1 51 0 268 297 113 28 chr3 104797544 104797827 -113239331 - L1ME LINE L1 -284 5886 5580 324 192 39 13 chr3 104798005 104798083 -113239075 + L2 LINE L2 3227 3306 -7 369 257 90 53 chr3 104798098 104798298 -113238860 - L1ME LINE L1 -743 5403 5191 3696 156 57 26 chr3 104798298 104799057 -113238101 - L1MC2 LINE L1 -9 6335 5554 369 257 90 53 chr3 104799057 104799101 -113238057 - L1ME LINE L1 -955 5191 5150 1571 180 30 0 chr3 104799157 104799424 -113237734 + AluJb SINE Alu 1 275 -37 27 0 0 0 chr3 104799511 104799538 -113237620 + AT_rich Low_complexity Low_complexity 1 27 0 302 294 11 0 chr3 104799872 104799964 -113237194 - L1MC4 LINE L1 -1339 6703 6611 21 57 0 0 chr3 104801107 104801142 -113236016 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr3 104801341 104801379 -113235779 + AT_rich Low_complexity Low_complexity 1 38 0 192 40 0 0 chr3 104801438 104801463 -113235695 + (TG)n Simple_repeat Simple_repeat 2 26 0 2118 108 0 0 chr3 104801571 104801848 -113235310 + AluSx SINE Alu 15 291 -21 21 0 0 0 chr3 104801848 104801869 -113235289 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 104803263 104803286 -113233872 + AT_rich Low_complexity Low_complexity 1 23 0 1514 177 30 10 chr3 104803286 104803585 -113233573 - L1MB2 LINE L1 -7 6164 5860 2592 131 10 0 chr3 104803585 104803986 -113233172 - L1PA15 LINE L1 0 6165 5758 2707 31 0 3 chr3 104804090 104804413 -113232745 + L1PA5 LINE L1 5825 6146 -8 22 0 0 0 chr3 104804413 104804435 -113232723 + AT_rich Low_complexity Low_complexity 1 22 0 189 329 12 12 chr3 104805411 104805493 -113231665 - MIR3 SINE MIR -46 162 81 1074 225 63 97 chr3 104805716 104805765 -113231393 - MLT2B1 LTR ERVL 0 414 365 225 94 0 0 chr3 104805765 104805797 -113231361 + (TATG)n Simple_repeat Simple_repeat 3 34 0 1074 225 63 97 chr3 104805797 104806161 -113230997 - MLT2B1 LTR ERVL -49 365 15 227 116 0 23 chr3 104806617 104806660 -113230498 - L1PA11 LINE L1 0 6174 6133 530 357 75 4 chr3 104806683 104806924 -113230234 + L3 LINE CR1 1272 1529 -48 1839 155 3 11 chr3 104808702 104809057 -113228101 - AluSx SINE Alu 0 353 1 290 270 135 36 chr3 104809075 104809186 -113227972 + L2 LINE L2 3151 3272 0 553 188 156 16 chr3 104809249 104809377 -113227781 + MLT1E1 LTR MaLR 1 146 -508 1703 202 39 93 chr3 104809451 104809986 -113227172 + MLT1E1 LTR MaLR 149 654 0 526 285 7 0 chr3 104810078 104810215 -113226943 + L2 LINE L2 3176 3313 0 374 277 168 7 chr3 104810440 104810595 -113226563 + MIR SINE MIR 25 204 -58 1897 171 0 0 chr3 104810771 104811075 -113226083 - AluSg SINE Alu -6 304 1 1146 279 114 39 chr3 104811203 104811643 -113225515 - L3 LINE CR1 -508 1069 597 403 238 73 46 chr3 104811677 104811828 -113225330 - MER103 DNA DNA 0 166 12 210 346 24 55 chr3 104811908 104812035 -113225123 - L3 LINE CR1 -1295 282 160 680 355 96 20 chr3 104812928 104813385 -113223773 - L2 LINE L2 -5 3308 2817 2832 10 0 0 chr3 104813961 104814269 -113222889 + AluY SINE Alu 1 308 -3 382 284 92 21 chr3 104815063 104815204 -113221954 + MIR3 SINE MIR 45 195 -13 890 194 34 0 chr3 104816235 104816410 -113220748 + MER82 DNA MER2_type 1 181 -472 1482 272 108 8 chr3 104816569 104817043 -113220115 - MLT1G1 LTR MaLR 0 595 75 437 311 81 7 chr3 104818531 104818738 -113218420 + MIR SINE MIR 1 218 -44 288 376 23 0 chr3 104819558 104819691 -113217467 - L2 LINE L2 0 3272 3137 7340 155 12 94 chr3 104820238 104821073 -113216085 - L1PA14 LINE L1 0 6161 5259 1683 87 0 0 chr3 104821073 104821280 -113215878 - AluSq SINE Alu -20 293 87 7340 155 12 94 chr3 104821280 104823170 -113213988 - L1PA14 LINE L1 -902 5259 3671 7179 210 11 13 chr3 104823169 104824809 -113212349 + L1PA14 LINE L1 2739 4366 -2483 * 2264 123 9 3 chr3 104825076 104825408 -113211750 - MER1A DNA MER1_type 0 529 196 230 189 59 32 chr3 104825432 104825510 -113211648 - L1M4 LINE L1 -435 5743 5665 226 276 9 48 chr3 104825564 104825669 -113211489 - L1P LINE L1 -767 5387 5287 31371 65 4 1 chr3 104826162 104831031 -113206127 - L1PA6 LINE L1 -6 6148 1273 351 267 170 5 chr3 104831431 104831637 -113205521 - L1MEc LINE L1 -3558 2657 2418 267 285 71 38 chr3 104831681 104832021 -113205137 - L1MEc LINE L1 -4048 2348 1998 1602 228 104 17 chr3 104832040 104832579 -113204579 - L1M4 LINE L1 -791 5355 4770 295 315 62 25 chr3 104833988 104834150 -113203008 + MER117 DNA MER1_type 1 168 -29 15214 37 9 2 chr3 104834379 104836985 -113200173 + L1PA14 LINE L1 3545 6156 -5 312 315 85 23 chr3 104837237 104837367 -113199791 + MIR SINE MIR 50 187 -75 22 0 0 0 chr3 104838536 104838558 -113198600 + AT_rich Low_complexity Low_complexity 1 22 0 2143 203 273 2 chr3 104839484 104840100 -113197058 - L1P LINE L1 -1239 4907 4125 5614 138 3 8 chr3 104840101 104841350 -113195808 + L1PA15 LINE L1 4912 6158 -7 243 368 43 8 chr3 104842136 104842253 -113194905 + L2 LINE L2 2258 2378 -936 237 347 153 33 chr3 104842267 104842417 -113194741 - MIR3 SINE MIR -23 185 18 180 297 141 0 chr3 104843163 104843227 -113193931 + L2 LINE L2 1177 1249 -2065 1136 275 66 17 chr3 104843488 104843837 -113193321 + MLT1I LTR MaLR 11 376 -33 1104 258 104 58 chr3 104843868 104844407 -113192751 + L1MB5 LINE L1 10 573 -5969 * 3939 202 52 23 chr3 104844406 104845962 -113191196 + L1MB5 LINE L1 4963 6672 0 1020 111 7 7 chr3 104846582 104846735 -113190423 - L1PB2 LINE L1 -2 6149 5997 13932 178 26 24 chr3 104846994 104852897 -113184261 - L1MA3 LINE L1 0 7724 1803 635 272 134 69 chr3 104853384 104853947 -113183211 - L2 LINE L2 0 3313 2693 521 51 0 25 chr3 104853947 104854026 -113183132 + L1PA5 LINE L1 6078 6154 0 635 272 134 69 chr3 104854026 104854136 -113183022 - L2 LINE L2 -620 2693 2592 23 78 0 0 chr3 104856223 104856274 -113180884 + AT_rich Low_complexity Low_complexity 1 51 0 279 160 104 9 chr3 104856274 104856380 -113180778 + (TTAAA)n Simple_repeat Simple_repeat 1 116 0 408 244 212 29 chr3 104857783 104858003 -113179155 + MIR SINE MIR 6 262 0 713 330 69 2 chr3 104859155 104859604 -113177554 + L1M4 LINE L1 3875 4353 -1793 1011 264 199 11 chr3 104859726 104860133 -113177025 + MLT1F1 LTR MaLR 22 513 -54 2589 139 27 2 chr3 104860142 104860553 -113176605 + MSTA LTR MaLR 8 428 0 9064 169 14 30 chr3 104860553 104860903 -113176255 + MSTA-int LTR MaLR 1 355 -1296 1456 127 45 0 chr3 104860903 104861123 -113176035 - MER30 DNA MER1_type 0 230 1 9064 169 14 30 chr3 104861123 104862451 -113174707 + MSTA-int LTR MaLR 355 1651 0 1965 150 112 25 chr3 104862451 104862645 -113174513 + MSTA LTR MaLR 1 177 -251 2429 73 0 0 chr3 104862645 104862945 -113174213 + AluY SINE Alu 1 300 -11 1965 150 112 25 chr3 104862945 104863144 -113174014 + MSTA LTR MaLR 177 428 0 727 296 0 16 chr3 104863198 104863384 -113173774 - MIR SINE MIR -77 185 3 210 71 0 0 chr3 104864051 104864079 -113173079 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 673 263 94 19 chr3 104864759 104865067 -113172091 - HAL1 LINE L1 -773 1734 1404 2208 153 19 11 chr3 104865254 104865620 -113171538 + MLT2D LTR ERVL 1 369 -45 381 43 0 0 chr3 104865755 104865802 -113171356 + (CA)n Simple_repeat Simple_repeat 1 47 0 21 36 0 0 chr3 104867425 104867453 -113169705 + AT_rich Low_complexity Low_complexity 1 28 0 3254 42 10 0 chr3 104868415 104868821 -113168337 - L1PA3 LINE L1 -3 6152 5743 25 0 0 0 chr3 104869829 104869854 -113167304 + AT_rich Low_complexity Low_complexity 1 25 0 191 306 0 0 chr3 104870182 104870231 -113166927 - L2 LINE L2 -234 3038 2990 1797 129 4 4 chr3 104870517 104870780 -113166378 - AluSx SINE Alu -49 263 1 254 346 221 0 chr3 104871201 104871455 -113165703 - L2 LINE L2 -1116 2198 1889 9169 139 30 1 chr3 104871909 104873392 -113163766 + Tigger1 DNA MER2_type 707 2232 -186 14599 173 26 7 chr3 104873405 104877610 -113159548 - L1MA2 LINE L1 0 7723 3433 * 16180 175 23 7 chr3 104877603 104880641 -113156517 - L1MA2 LINE L1 -4462 3103 16 1107 184 21 5 chr3 104880642 104881913 -113155245 - L1M1 LINE L1 -695 7029 5654 * 18406 180 33 7 chr3 104881902 104882313 -113154845 - L1M1 LINE L1 -3639 3926 3527 738 53 0 0 chr3 104882313 104882408 -113154750 + (TTCC)n Simple_repeat Simple_repeat 3 97 0 18406 180 33 7 chr3 104882408 104885809 -113151349 - L1M1 LINE L1 -4038 3527 12 319 256 11 11 chr3 104885828 104885918 -113151240 + L1MC4 LINE L1 6614 6703 -1339 490 266 53 28 chr3 104885934 104886216 -113150942 + L1M4 LINE L1 2380 2668 -3478 1141 246 63 46 chr3 104886265 104886344 -113150814 + L1M4 LINE L1 4742 4818 -1328 405 0 0 0 chr3 104886344 104886389 -113150769 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 1141 246 63 46 chr3 104886389 104886788 -113150370 + L1M4 LINE L1 4818 5228 -918 222 186 0 34 chr3 104886797 104886856 -113150302 + (TA)n Simple_repeat Simple_repeat 2 58 0 389 217 121 51 chr3 104886893 104887050 -113150108 + L1ME2 LINE L1 3914 4081 -2065 1153 234 68 39 chr3 104887083 104887497 -113149661 + L1ME2 LINE L1 5331 5756 -410 2357 62 0 10 chr3 104887508 104887800 -113149358 + AluY SINE Alu 1 289 -22 400 222 97 54 chr3 104887818 104888003 -113149155 + L1ME2 LINE L1 5824 6016 -148 242 228 54 33 chr3 104888003 104888095 -113149063 + MER3 DNA MER1_type 12 105 -104 2399 62 0 13 chr3 104888502 104888810 -113148348 + AluY SINE Alu 1 304 -7 225 0 0 0 chr3 104888978 104889003 -113148155 + (T)n Simple_repeat Simple_repeat 1 25 0 388 337 47 21 chr3 104889230 104889423 -113147735 - L3b LINE CR1 -202 1381 1184 1648 178 38 3 chr3 104890812 104891104 -113146054 + AluJb SINE Alu 1 302 -10 337 183 0 0 chr3 104891106 104891166 -113145992 + AluJ/FLAM SINE Alu 1 60 -242 549 299 111 24 chr3 104891472 104891887 -113145271 - L1M4 LINE L1 -1458 4688 4238 232 152 13 89 chr3 104892092 104892171 -113144987 - L1 LINE L1 -1602 4544 4472 6698 70 13 41 chr3 104892177 104893559 -113143599 - L1PA7 LINE L1 0 6154 4788 278 335 48 28 chr3 104893766 104893991 -113143167 + MIR SINE MIR 34 262 0 21 0 0 0 chr3 104894610 104894631 -113142527 + AT_rich Low_complexity Low_complexity 1 21 0 3594 105 31 90 chr3 104894738 104895483 -113141675 - THE1B-int LTR MaLR -879 701 1 1880 144 46 29 chr3 104895514 104895862 -113141296 - THE1B LTR MaLR -10 354 1 1497 348 86 11 chr3 104895863 104896635 -113140523 + L2 LINE L2 2328 3165 -148 3337 176 13 3 chr3 104896789 104897465 -113139693 - L1 LINE L1 -2223 5342 4660 3093 208 94 10 chr3 104897458 104898642 -113138516 - L1 LINE L1 -5501 2064 97 * 428 321 25 6 chr3 104898761 104898923 -113138235 + L1M4 LINE L1 3033 3197 -2949 1928 108 26 8 chr3 104898976 104899244 -113137914 + AluSq SINE Alu 14 286 -27 21 0 0 0 chr3 104899332 104899353 -113137805 + AT_rich Low_complexity Low_complexity 1 21 0 1605 220 27 13 chr3 104899461 104899931 -113137227 + L1MB5 LINE L1 5202 5679 -499 921 169 0 32 chr3 104899940 104900094 -113137064 + FRAM SINE Alu 23 171 -5 1970 209 4 43 chr3 104900116 104900599 -113136559 + L1MB5 LINE L1 5702 6165 -9 260 122 61 0 chr3 104900913 104900962 -113136196 + L1MDb LINE L1 1261 1312 -5097 239 130 43 0 chr3 104901140 104901186 -113135972 - L1P LINE L1 -788 5363 5316 1201 78 0 0 chr3 104901191 104901344 -113135814 - L1PA10 LINE L1 -11 6157 6005 3956 161 13 16 chr3 104901344 104902201 -113134957 - L1 LINE L1 -1080 5066 4213 3022 82 2 0 chr3 104902199 104902627 -113134531 + L1P LINE L1 699 1127 -5019 * 601 279 31 26 chr3 104902844 104903073 -113134085 - L1MC4 LINE L1 -17 8025 7796 2204 91 7 7 chr3 104903075 104903362 -113133796 - AluSp SINE Alu -6 307 21 1641 149 76 11 chr3 104903403 104903679 -113133479 - AluJo SINE Alu -18 294 1 360 296 54 45 chr3 104905026 104905564 -113131594 + L1ME LINE L1 544 1086 -4984 884 264 179 15 chr3 104906273 104906614 -113130544 - LTR16A LTR ERVL -2 448 52 785 339 95 23 chr3 104906742 104907408 -113129750 + L2 LINE L2 2330 3049 -264 226 351 58 32 chr3 104908393 104908547 -113128611 - MIR3 SINE MIR -15 193 36 1694 112 8 47 chr3 104908567 104908873 -113128285 + AluSp SINE Alu 37 332 0 331 256 20 75 chr3 104908933 104909078 -113128080 - MIR3 SINE MIR -24 184 47 1505 204 27 3 chr3 104909518 104909852 -113127306 - L1MB4 LINE L1 0 6180 5839 2176 120 10 0 chr3 104911244 104911535 -113125623 + AluSx SINE Alu 1 294 -18 340 43 21 0 chr3 104911535 104911582 -113125576 + (TA)n Simple_repeat Simple_repeat 2 49 0 362 250 96 40 chr3 104911592 104911809 -113125349 + L1MB8 LINE L1 5644 5881 -297 384 331 8 8 chr3 104912028 104912152 -113125006 - L2 LINE L2 0 3313 3190 35 54 0 0 chr3 104913441 104913497 -113123661 + AT_rich Low_complexity Low_complexity 1 56 0 428 335 19 9 chr3 104913860 104914072 -113123086 - MIR SINE MIR 0 262 49 346 200 50 0 chr3 104914075 104914155 -113123003 + MLT1A2 LTR MaLR 1 84 -290 23 54 0 0 chr3 104914278 104914315 -113122843 + AT_rich Low_complexity Low_complexity 1 37 0 1635 237 72 64 chr3 104915250 104915829 -113121329 + MLT1E2 LTR MaLR 1 584 -42 903 228 70 19 chr3 104915958 104916270 -113120888 - L1MC4 LINE L1 -619 7423 7096 185 297 31 16 chr3 104916911 104916975 -113120183 + L2 LINE L2 3205 3269 -3 516 202 54 23 chr3 104917337 104917466 -113119692 - FLAM_C SINE Alu -2 141 9 231 287 99 30 chr3 104917579 104917680 -113119478 + MIR3 SINE MIR 79 186 -22 192 179 0 0 chr3 104917762 104917801 -113119357 + CT-rich Low_complexity Low_complexity 2 40 0 1238 155 70 26 chr3 104917826 104918097 -113119061 - MLT1B LTR MaLR -1 389 107 2069 137 76 17 chr3 104919931 104920275 -113116883 - THE1B LTR MaLR 0 364 1 3273 144 16 2 chr3 104920275 104920836 -113116322 - THE1B-int LTR MaLR 0 1580 1012 608 174 78 90 chr3 104922229 104922263 -113114895 - MLT1C LTR MaLR -269 236 203 411 21 0 0 chr3 104922263 104922311 -113114847 + (TG)n Simple_repeat Simple_repeat 1 48 0 1945 129 7 0 chr3 104922311 104922589 -113114569 - AluSq SINE Alu -33 280 1 608 174 78 90 chr3 104922589 104922782 -113114376 - MLT1C LTR MaLR -300 205 7 22 0 0 0 chr3 104924613 104924635 -113112523 + GC_rich Low_complexity Low_complexity 1 22 0 410 346 108 0 chr3 104924898 104925112 -113112046 + HERVL LTR ERVL 4104 4340 -1314 468 313 60 35 chr3 104925187 104926012 -113111146 + L1M4 LINE L1 3498 4366 -1780 307 321 33 16 chr3 104926448 104926632 -113110526 - L1MEd LINE L1 -4979 1140 954 23 54 0 0 chr3 104926632 104926669 -113110489 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr3 104926941 104926962 -113110196 + AT_rich Low_complexity Low_complexity 1 21 0 309 252 55 8 chr3 104927271 104927398 -113109760 + (CATATA)n Simple_repeat Simple_repeat 5 137 0 2276 217 31 45 chr3 104927594 104928620 -113108538 + L1M3e LINE L1 777 1788 -4525 548 214 0 40 chr3 104928845 104928971 -113108187 - MIR3 SINE MIR -1 207 87 429 267 98 41 chr3 104929374 104929640 -113107518 - MLT1G1 LTR MaLR -5 590 310 313 279 71 5 chr3 104929753 104929950 -113107208 - AluJb SINE Alu -3 299 90 1229 217 7 40 chr3 104930397 104930669 -113106489 - AluJo SINE Alu -49 263 1 1205 232 102 33 chr3 104930670 104931119 -113106039 - MER21B LTR ERV1 -60 803 324 196 330 78 17 chr3 104931404 104931519 -113105639 - L2 LINE L2 -8 3305 3184 23 0 0 0 chr3 104932464 104932487 -113104671 + AT_rich Low_complexity Low_complexity 1 23 0 240 323 30 20 chr3 104933531 104933630 -113103528 + MIR SINE MIR 57 156 -106 447 133 31 141 chr3 104933768 104933896 -113103262 + MSTA LTR MaLR 262 428 0 253 79 0 0 chr3 104934218 104934256 -113102902 + L1MA2 LINE L1 5911 5948 -356 682 165 0 9 chr3 104934261 104934376 -113102782 + AluJb SINE Alu 5 118 -194 23 55 0 18 chr3 104934376 104934397 -113102761 + AT_rich Low_complexity Low_complexity 1 21 -33 1727 96 47 75 chr3 104934397 104934781 -113102377 + L1MA2 LINE L1 5932 6304 0 23 55 0 18 chr3 104934781 104934814 -113102344 + AT_rich Low_complexity Low_complexity 21 54 0 22 0 0 0 chr3 104934824 104934846 -113102312 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr3 104936020 104936058 -113101100 + AT_rich Low_complexity Low_complexity 1 38 0 450 311 46 26 chr3 104936224 104936530 -113100628 + HsTC2 DNA Tc2 496 807 -1091 339 356 82 32 chr3 104936862 104937143 -113100015 - L2 LINE L2 -172 3100 2806 34 0 0 0 chr3 104938174 104938208 -113098950 + AT_rich Low_complexity Low_complexity 1 34 0 225 0 0 0 chr3 104939720 104939745 -113097413 + (T)n Simple_repeat Simple_repeat 1 25 0 648 325 51 43 chr3 104939873 104940128 -113097030 - MIR SINE MIR -4 258 2 358 357 32 0 chr3 104940423 104940549 -113096609 + L2 LINE L2 3143 3272 0 21 0 0 0 chr3 104941031 104941052 -113096106 + AT_rich Low_complexity Low_complexity 1 21 0 2627 103 77 5 chr3 104941535 104941953 -113095205 + MLT2A2 LTR ERVL 6 453 0 333 399 8 0 chr3 104941953 104942086 -113095072 - MIR3 SINE MIR -45 163 30 2087 226 82 5 chr3 104943519 104944108 -113093050 - L1 LINE L1 -1388 4758 4125 1352 208 4 0 chr3 104944754 104945023 -113092135 - L1PB4 LINE L1 0 6156 5887 667 276 27 31 chr3 104945315 104945572 -113091586 - MLT1H LTR MaLR -270 279 24 385 197 0 0 chr3 104947088 104947164 -113089994 + MER112 DNA MER1_type 1 76 -184 1108 48 14 0 chr3 104947448 104947594 -113089564 + LTR13 LTR ERVK 1 148 -859 293 234 78 13 chr3 104947937 104948014 -113089144 - MIR SINE MIR -171 91 10 553 192 0 0 chr3 104948039 104948138 -113089020 + FRAM SINE Alu 67 165 -11 309 312 46 52 chr3 104948197 104948370 -113088788 + L1ME LINE L1 5336 5507 -614 1743 166 32 0 chr3 104949906 104950219 -113086939 + MER2 DNA MER2_type 1 323 -22 215 346 12 25 chr3 104950946 104951027 -113086131 + MIR3 SINE MIR 124 203 -5 207 100 0 0 chr3 104952046 104952076 -113085082 + (CACCAT)n Simple_repeat Simple_repeat 3 32 0 547 270 0 0 chr3 104952076 104952202 -113084956 - MIR SINE MIR -14 248 123 186 231 0 0 chr3 104952487 104952526 -113084632 - L3 LINE CR1 -733 844 806 224 315 147 28 chr3 104952677 104952820 -113084338 - L2 LINE L2 0 3313 3154 513 276 109 0 chr3 104953689 104953845 -113083313 + LTR33 LTR ERVL 1 173 -348 351 257 9 0 chr3 104953860 104953969 -113083189 + LTR33 LTR ERVL 391 500 -21 21 43 0 0 chr3 104955040 104955063 -113082095 + AT_rich Low_complexity Low_complexity 1 23 0 403 322 158 0 chr3 104956214 104956360 -113080798 - MIR3 SINE MIR -4 204 36 854 292 77 49 chr3 104956412 104956656 -113080502 - L2 LINE L2 -5 3308 3072 1530 216 18 0 chr3 104956656 104956939 -113080219 + AluJo SINE Alu 3 290 -22 854 292 77 49 chr3 104956939 104957284 -113079874 - L2 LINE L2 -241 3072 2623 361 350 8 8 chr3 104957297 104957417 -113079741 + L2 LINE L2 3193 3312 -1 2326 289 121 36 chr3 104957436 104958551 -113078607 - L2 LINE L2 -706 2608 1399 6289 160 45 5 chr3 104958552 104959788 -113077370 - HSMAR2 DNA Mariner -2 1300 15 580 62 12 0 chr3 104959974 104960054 -113077104 - AluY SINE Alu -229 81 1 432 311 106 6 chr3 104960200 104960380 -113076778 + MIR SINE MIR 11 208 -54 1030 162 10 9 chr3 104960380 104960699 -113076459 + MSTD LTR MaLR 2 396 0 647 292 17 17 chr3 104960767 104960945 -113076213 - MIR SINE MIR -70 192 15 275 206 27 0 chr3 104961986 104962059 -113075099 + CT-rich Low_complexity Low_complexity 4 78 0 369 320 20 26 chr3 104962665 104962818 -113074340 + MIR3 SINE MIR 57 208 0 228 35 0 0 chr3 104963406 104963435 -113073723 + (TAA)n Simple_repeat Simple_repeat 1 29 0 23 0 0 0 chr3 104963839 104963862 -113073296 + AT_rich Low_complexity Low_complexity 1 23 0 435 321 5 11 chr3 104964533 104964723 -113072435 - L1ME LINE L1 -360 5810 5622 21 0 0 0 chr3 104965243 104965264 -113071894 + AT_rich Low_complexity Low_complexity 1 21 0 904 272 82 30 chr3 104965938 104966339 -113070819 - L1ME LINE L1 -360 5744 5323 822 246 91 112 chr3 104966743 104967478 -113069680 - L1ME LINE L1 -982 5098 4386 2009 181 38 35 chr3 104967478 104967930 -113069228 + MSTB2 LTR MaLR 1 453 -4 822 246 91 112 chr3 104967930 104968122 -113069036 - L1ME LINE L1 -1694 4386 4191 * 871 300 131 15 chr3 104968114 104968895 -113068263 - L1ME LINE L1 -2258 3822 2952 853 153 62 14 chr3 104969475 104969684 -113067474 - L1PA13 LINE L1 -7 6156 5938 2730 66 21 0 chr3 104969822 104970250 -113066908 - L1P3 LINE L1 -521 5633 5199 364 303 98 23 chr3 104970252 104971217 -113065941 - L1ME LINE L1 -4512 1568 544 352 324 129 18 chr3 104973347 104973517 -113063641 + L2 LINE L2 2901 3089 -183 208 240 0 20 chr3 104973673 104973723 -113063435 + GA-rich Low_complexity Low_complexity 3 51 0 2077 142 0 0 chr3 104974179 104974475 -113062683 + AluY SINE Alu 1 296 -15 225 392 16 7 chr3 104974654 104974790 -113062368 - MIR SINE MIR -64 144 7 758 242 56 5 chr3 104975094 104975292 -113061866 + MLT1I LTR MaLR 3 210 -199 228 67 0 0 chr3 104975318 104975348 -113061810 + (T)n Simple_repeat Simple_repeat 1 30 0 235 235 0 0 chr3 104975683 104975734 -113061424 + MER34 LTR ERV1 1 51 -491 1053 213 64 58 chr3 104975846 104976207 -113060951 + MER39 LTR ERV1 345 707 0 2534 259 76 38 chr3 104977381 104980526 -113056632 + L1MA8 LINE L1 88 3564 -3542 1239 223 30 70 chr3 104980575 104980948 -113056210 + L1MA1 LINE L1 14 371 -7194 * 8670 198 24 18 chr3 104980923 104983236 -113053922 + L1MA1 LINE L1 3734 6141 -1580 2569 111 5 3 chr3 104983236 104983606 -113053552 - THE1C LTR MaLR -2 373 3 8670 198 24 18 chr3 104983606 104985194 -113051964 + L1MA1 LINE L1 6141 7717 -4 11342 189 45 23 chr3 104985203 104985602 -113051556 + L1MA8 LINE L1 3599 3988 -3263 2378 64 10 0 chr3 104985602 104985899 -113051259 + AluY SINE Alu 1 300 -11 11342 189 45 23 chr3 104985899 104988600 -113048558 + L1MA8 LINE L1 3988 6792 -459 218 31 0 31 chr3 104988600 104988632 -113048526 + (CA)n Simple_repeat Simple_repeat 2 32 0 11342 189 45 23 chr3 104988632 104989091 -113048067 + L1MA8 LINE L1 6792 7239 -12 30 45 0 0 chr3 104989098 104989142 -113048016 + AT_rich Low_complexity Low_complexity 1 44 0 222 306 31 20 chr3 104989182 104989280 -113047878 - MIR SINE MIR -64 198 100 191 225 101 56 chr3 104989672 104989761 -113047397 - L2 LINE L2 -2092 1222 1130 180 0 0 0 chr3 104990006 104990026 -113047132 + (GGGA)n Simple_repeat Simple_repeat 2 21 0 309 26 0 0 chr3 104990123 104990161 -113046997 + (GA)n Simple_repeat Simple_repeat 1 38 0 180 0 0 0 chr3 104990496 104990516 -113046642 + (T)n Simple_repeat Simple_repeat 1 20 0 337 266 97 82 chr3 104990727 104991212 -113045946 - MLT1J LTR MaLR -19 492 1 263 274 127 32 chr3 104991219 104991376 -113045782 + L2 LINE L2 3125 3296 -17 194 329 0 49 chr3 104991704 104991786 -113045372 - MIR SINE MIR -148 114 37 224 59 29 0 chr3 104992008 104992042 -113045116 + (CTGTG)n Simple_repeat Simple_repeat 2 36 0 429 299 25 13 chr3 104995365 104995522 -113041636 - LTR16A1 LTR ERVL -100 357 199 279 247 45 34 chr3 104996316 104996405 -113040753 - MIR SINE MIR -171 91 2 273 276 57 0 chr3 104998622 104998727 -113038431 + MER103 DNA DNA 55 165 -1 2422 104 0 0 chr3 104998736 104999045 -113038113 - AluSg SINE Alu -1 309 1 188 253 93 67 chr3 104999097 104999172 -113037986 + MIR3 SINE MIR 132 208 0 1833 230 37 5 chr3 105000924 105001480 -113035678 - L1ME LINE L1 -422 5744 5170 368 371 112 0 chr3 105001883 105002115 -113035043 + L3 LINE CR1 291 548 -1029 758 143 20 7 chr3 105002241 105002388 -113034770 - L1P4 LINE L1 -527 5638 5490 6903 58 19 13 chr3 105002388 105003767 -113033391 - L1PA6 LINE L1 -5 6149 4767 24 0 0 0 chr3 105004817 105004841 -113032317 + AT_rich Low_complexity Low_complexity 1 24 0 1143 343 125 21 chr3 105005515 105006282 -113030876 + L3 LINE CR1 291 1137 -440 188 211 0 18 chr3 105007386 105007443 -113029715 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 1055 56 7 0 chr3 105007877 105008020 -113029138 + L1PA4 LINE L1 6011 6154 -1 1310 193 91 37 chr3 105008467 105008763 -113028395 - AluJb SINE Alu 0 312 1 220 204 0 0 chr3 105008862 105008906 -113028252 + L2 LINE L2 3021 3064 -208 219 324 0 0 chr3 105009025 105009093 -113028065 + L2 LINE L2 3203 3270 -2 184 236 222 0 chr3 105010921 105010993 -113026165 - L2 LINE L2 -8 3305 3218 256 307 131 35 chr3 105011199 105011314 -113025844 - MIR3 SINE MIR -104 104 2 428 235 168 41 chr3 105011607 105011803 -113025355 + MLT1J LTR MaLR 290 510 -1 188 288 200 8 chr3 105011872 105011997 -113025161 + L2 LINE L2 2765 2913 -401 330 260 10 21 chr3 105012142 105012238 -113024920 + GA-rich Low_complexity Low_complexity 2 96 0 382 293 157 0 chr3 105014500 105014647 -113022511 - MIR SINE MIR -2 260 91 627 278 99 71 chr3 105014760 105015152 -113022006 - LTR33A LTR ERVL -54 469 67 444 262 28 0 chr3 105016610 105016751 -113020407 + LTR33A LTR ERVL 379 523 0 256 212 35 0 chr3 105016848 105016933 -113020225 + GA-rich Low_complexity Low_complexity 2 89 0 1619 186 11 29 chr3 105017999 105018349 -113018809 - MLT1A1 LTR MaLR -3 362 19 202 328 180 25 chr3 105019560 105019682 -113017476 + MIR SINE MIR 48 188 -74 2383 77 13 0 chr3 105020949 105021249 -113015909 + AluSp SINE Alu 1 304 -9 21 57 0 0 chr3 105021715 105021750 -113015408 + AT_rich Low_complexity Low_complexity 1 35 0 702 288 78 48 chr3 105021820 105022323 -113014835 - LTR33A LTR ERVL -2 521 4 23 0 0 0 chr3 105022444 105022467 -113014691 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr3 105022716 105022753 -113014405 + GC_rich Low_complexity Low_complexity 1 37 0 29 47 0 0 chr3 105022800 105022843 -113014315 + GC_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr3 105022954 105022978 -113014180 + GC_rich Low_complexity Low_complexity 1 24 0 604 227 15 8 chr3 105023242 105023374 -113013784 + MER5A DNA MER1_type 5 137 -52 22 35 0 0 chr3 105024493 105024522 -113012636 + AT_rich Low_complexity Low_complexity 1 29 0 1189 99 0 0 chr3 105024872 105025034 -113012124 + AluSg/x SINE Alu 137 298 -14 228 304 10 59 chr3 105025929 105026031 -113011127 + MIR SINE MIR 20 116 -92 295 220 108 27 chr3 105026203 105026389 -113010769 - L1M4 LINE L1 -2063 4083 3883 1782 176 13 0 chr3 105026536 105026842 -113010316 + AluJb SINE Alu 1 310 -2 2096 262 72 12 chr3 105026861 105027967 -113009191 - L1M4 LINE L1 -2522 3624 2457 1649 157 4 8 chr3 105028260 105028566 -113008592 - AluSx SINE Alu 0 349 45 3116 184 10 26 chr3 105028681 105029400 -113007758 + L1PA16 LINE L1 4298 5004 -1142 208 154 26 0 chr3 105029612 105029651 -113007507 + (CA)n Simple_repeat Simple_repeat 2 41 0 1707 88 19 65 chr3 105030137 105030444 -113006714 - AluY SINE Alu -18 293 1 1167 188 41 8 chr3 105032281 105032547 -113004611 + L1PA16 LINE L1 5892 6166 0 23 33 0 0 chr3 105032598 105032628 -113004530 + AT_rich Low_complexity Low_complexity 1 30 0 378 217 13 20 chr3 105033038 105033190 -113003968 - L1PA5 LINE L1 -11 6143 5993 2918 162 17 17 chr3 105033696 105034288 -113002870 - L1PA16 LINE L1 -1 6165 5574 2125 133 23 6 chr3 105034288 105034634 -113002524 + L1PA16 LINE L1 5560 5911 -255 3562 215 61 5 chr3 105034802 105035490 -113001668 + L1 LINE L1 3424 4179 -1967 2194 133 3 0 chr3 105035490 105035799 -113001359 + AluSx SINE Alu 1 310 -2 3562 215 61 5 chr3 105035799 105036044 -113001114 + L1 LINE L1 4179 4409 -1737 2339 95 0 0 chr3 105036048 105036344 -113000814 + AluSx SINE Alu 1 296 -16 410 111 0 0 chr3 105036482 105036536 -113000622 + AluSp/q SINE Alu 216 269 -44 4980 129 39 20 chr3 105036543 105038267 -112998891 + L1PA15 LINE L1 4398 6148 -17 638 282 51 18 chr3 105038392 105038861 -112998297 - L1MEd LINE L1 -4733 1577 1046 209 242 167 0 chr3 105041117 105041183 -112995975 - L2 LINE L2 -25 3247 3171 1161 215 99 58 chr3 105041373 105041859 -112995299 - MLT1E2 LTR MaLR -2 624 1 256 251 56 116 chr3 105041864 105042079 -112995079 - MLT1K LTR MaLR -18 570 369 258 105 0 0 chr3 105042128 105042166 -112994992 + (A)n Simple_repeat Simple_repeat 1 38 0 257 319 86 17 chr3 105042427 105042543 -112994615 + L2 LINE L2 3149 3272 0 211 256 172 8 chr3 105042712 105042840 -112994318 - MIR SINE MIR -62 146 17 647 162 0 84 chr3 105044128 105044270 -112992888 - FLAM_C SINE Alu -9 134 5 3729 167 3 12 chr3 105044831 105045496 -112991662 + L1 LINE L1 3708 4366 -1780 5441 93 4 9 chr3 105045496 105046278 -112990880 + L1MA1 LINE L1 5515 6302 0 431 280 37 53 chr3 105047470 105047657 -112989501 + MIR SINE MIR 30 212 -50 375 23 0 0 chr3 105050329 105050373 -112986785 + (TA)n Simple_repeat Simple_repeat 1 44 0 180 0 0 0 chr3 105050372 105050392 -112986766 + (CA)n Simple_repeat Simple_repeat 2 21 0 * 21 0 0 0 chr3 105050744 105050765 -112986393 + AT_rich Low_complexity Low_complexity 1 21 0 2197 106 3 0 chr3 105050995 105051287 -112985871 + AluSx SINE Alu 3 295 -17 200 135 27 0 chr3 105051518 105051555 -112985603 + (TA)n Simple_repeat Simple_repeat 2 39 0 36656 87 8 6 chr3 105051857 105057840 -112979318 + L1PA6 LINE L1 182 6167 0 251 254 59 8 chr3 105058021 105058149 -112979009 - L1MC/D LINE L1 -441 5801 5686 1815 137 0 0 chr3 105058965 105059227 -112977931 - AluSx SINE Alu -13 299 38 23 68 0 0 chr3 105059514 105059558 -112977600 + AT_rich Low_complexity Low_complexity 1 44 0 400 251 58 73 chr3 105059640 105059967 -112977191 - L1ME4a LINE L1 -255 5866 5545 1619 318 29 22 chr3 105060187 105060816 -112976342 - HERV16 LTR ERVL -4347 649 17 456 333 57 28 chr3 105060827 105061234 -112975924 - LTR16A1 LTR ERVL 0 450 1 22 0 0 0 chr3 105061434 105061456 -112975702 + AT_rich Low_complexity Low_complexity 1 22 0 468 315 63 5 chr3 105062205 105062411 -112974747 + MIR SINE MIR 34 258 -4 21 0 0 0 chr3 105062411 105062432 -112974726 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chr3 105064060 105064101 -112973057 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1977 129 4 4 chr3 105064104 105064384 -112972774 - AluSx SINE Alu -30 282 3 270 358 75 15 chr3 105065420 105065554 -112971604 - MIR3 SINE MIR -22 186 45 4181 124 16 13 chr3 105065947 105066626 -112970532 - L1PA15 LINE L1 -1 6164 5484 * 14222 37 2 1 chr3 105066620 105069116 -112968042 - L1PA4 LINE L1 -2 6153 3652 350 62 0 0 chr3 105069121 105069169 -112967989 - L1PA15 LINE L1 -671 5497 5450 482 259 68 20 chr3 105069169 105069316 -112967842 + FRAM SINE Alu 2 155 -21 262 318 0 63 chr3 105069852 105069978 -112967180 + MIR3 SINE MIR 91 208 0 183 42 0 0 chr3 105070421 105070445 -112966713 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 191 333 127 24 chr3 105070446 105070572 -112966586 - L2 LINE L2 -12 3301 3163 346 301 52 64 chr3 105071143 105071316 -112965842 + HAL1 LINE L1 22 192 -2315 1447 250 32 56 chr3 105071347 105071811 -112965347 - LTR16A1 LTR ERVL -1 456 4 2709 135 16 2 chr3 105072537 105072974 -112964184 - L1PA15 LINE L1 -2 6163 5721 600 66 0 0 chr3 105072974 105073050 -112964108 - AluY SINE Alu -19 292 217 7360 175 19 0 chr3 105073050 105074800 -112962358 - L1PA15 LINE L1 -428 5737 3957 477 259 30 0 chr3 105074962 105075093 -112962065 - LTR16A1 LTR ERVL -322 135 1 1043 269 122 18 chr3 105075281 105075824 -112961334 + HAL1 LINE L1 1034 1632 -875 501 285 125 51 chr3 105075836 105076309 -112960849 + HAL1 LINE L1 1675 2182 -325 1236 65 12 6 chr3 105076390 105076558 -112960600 + L1PB2 LINE L1 5981 6149 -2 22 0 0 0 chr3 105076558 105076580 -112960578 + AT_rich Low_complexity Low_complexity 1 22 0 321 203 14 0 chr3 105076641 105076710 -112960448 + HAL1 LINE L1 2326 2395 -112 25 0 0 0 chr3 105076801 105076826 -112960332 + AT_rich Low_complexity Low_complexity 1 25 0 1769 170 0 39 chr3 105077227 105077533 -112959625 + AluJb SINE Alu 1 294 -18 275 128 64 21 chr3 105077588 105077682 -112959476 + (TA)n Simple_repeat Simple_repeat 2 99 0 2689 198 34 67 chr3 105077682 105078509 -112958649 + L1ME1 LINE L1 5323 6122 -44 311 279 155 0 chr3 105078413 105078542 -112958616 + L1MA10 LINE L1 6167 6315 -19 * 4515 86 3 6 chr3 105078581 105079211 -112957947 - L1PA13 LINE L1 0 6163 5536 253 331 73 37 chr3 105079292 105079428 -112957730 - L2 LINE L2 0 3272 3132 21 0 0 0 chr3 105079502 105079523 -112957635 + AT_rich Low_complexity Low_complexity 1 21 0 379 351 8 37 chr3 105079865 105079999 -112957159 - L3 LINE CR1 -7 1570 1441 874 223 5 0 chr3 105080326 105080510 -112956648 + MLT1B LTR MaLR 206 390 0 656 153 36 9 chr3 105080801 105080912 -112956246 + FLAM_A SINE Alu 12 125 -17 269 259 80 54 chr3 105081773 105081885 -112955273 - MIR SINE MIR -74 134 20 1470 193 61 30 chr3 105081985 105082280 -112954878 + AluJo SINE Alu 1 304 -8 4100 77 4 0 chr3 105082280 105082825 -112954333 + L1PA13 LINE L1 5612 6158 -5 2788 159 94 49 chr3 105082871 105083543 -112953615 + L1MB8 LINE L1 5332 6033 -145 323 185 74 0 chr3 105083553 105083634 -112953524 + L1MB7 LINE L1 6082 6168 -16 476 300 75 0 chr3 105083842 105084002 -112953156 - MIR SINE MIR -78 184 13 427 264 87 34 chr3 105084615 105084823 -112952335 + MLT1I LTR MaLR 43 261 -148 216 398 19 0 chr3 105084920 105085028 -112952130 - L2 LINE L2 -414 2900 2791 1552 243 61 35 chr3 105085300 105085790 -112951368 - MLT1D LTR MaLR 0 505 3 11566 157 39 38 chr3 105086558 105088839 -112948319 + L1M1 LINE L1 17 2299 -5266 290 306 35 12 chr3 105090209 105090294 -112946864 - L2 LINE L2 0 3272 3186 2046 89 7 4 chr3 105091396 105091665 -112945493 - AluSc SINE Alu 0 309 40 232 318 31 0 chr3 105091768 105091897 -112945261 - MER103 DNA DNA -9 157 25 1606 181 0 21 chr3 105092649 105092967 -112944191 + AluJb SINE Alu 1 312 0 180 0 0 0 chr3 105094272 105094292 -112942866 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2278 149 54 95 chr3 105095911 105096448 -112940710 + MLT2B3 LTR ERVL 1 514 -40 452 18 18 0 chr3 105096448 105096505 -112940653 + (TG)n Simple_repeat Simple_repeat 2 59 0 2278 149 54 95 chr3 105096505 105096545 -112940613 + MLT2B3 LTR ERVL 514 554 0 515 249 16 114 chr3 105096647 105096840 -112940318 - MIR3 SINE MIR -25 183 10 208 222 57 126 chr3 105097853 105098083 -112939075 + L2 LINE L2 2833 3046 -226 24 0 0 0 chr3 105099364 105099388 -112937770 + AT_rich Low_complexity Low_complexity 1 24 0 867 195 5 56 chr3 105099685 105099900 -112937258 + MER20 DNA MER1_type 16 219 0 25 0 0 0 chr3 105100095 105100120 -112937038 + AT_rich Low_complexity Low_complexity 1 25 0 232 231 138 0 chr3 105100120 105100185 -112936973 + MIR SINE MIR 131 204 -58 268 333 0 30 chr3 105101083 105101267 -112935891 + CT-rich Low_complexity Low_complexity 1 178 0 240 352 0 0 chr3 105103917 105104022 -112933136 + G-rich Low_complexity Low_complexity 1 105 0 335 317 113 65 chr3 105105328 105105726 -112931432 - L1M2 LINE L1 -5476 1373 957 1529 201 24 10 chr3 105107404 105107702 -112929456 - AluSx SINE Alu -10 302 1 223 158 26 0 chr3 105109255 105109293 -112927865 + (TCCA)n Simple_repeat Simple_repeat 2 40 0 1036 325 117 18 chr3 105109293 105110124 -112927034 - L2 LINE L2 -1 3312 2400 237 324 29 0 chr3 105111721 105111789 -112925369 + MIR SINE MIR 47 116 -146 216 322 68 20 chr3 105112162 105112308 -112924850 - MIR3 SINE MIR -1 207 55 183 227 0 23 chr3 105112475 105112519 -112924639 + MIR3 SINE MIR 157 199 -9 225 344 33 25 chr3 105112669 105112791 -112924367 + L2 LINE L2 2976 3098 -174 593 322 65 9 chr3 105113607 105113837 -112923321 + MIR SINE MIR 17 259 -3 327 247 71 0 chr3 105113951 105114036 -112923122 + L2 LINE L2 3221 3311 -2 467 283 103 82 chr3 105114070 105114303 -112922855 - L2 LINE L2 -50 3222 2985 186 189 0 0 chr3 105116005 105116042 -112921116 + A-rich Low_complexity Low_complexity 1 37 0 327 70 0 70 chr3 105116051 105116122 -112921036 + (GGGAA)n Simple_repeat Simple_repeat 1 66 0 183 333 86 0 chr3 105117258 105117339 -112919819 - MIR3 SINE MIR -3 205 118 279 0 0 0 chr3 105117639 105117670 -112919488 + (TG)n Simple_repeat Simple_repeat 2 32 0 459 341 62 13 chr3 105117762 105117988 -112919170 + L3b LINE CR1 1283 1519 -64 189 0 0 0 chr3 105118087 105118108 -112919050 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 341 246 132 9 chr3 105119437 105119551 -112917607 - L2 LINE L2 -1 3312 3185 286 294 25 42 chr3 105119609 105119728 -112917430 + MIR SINE MIR 146 262 0 10623 34 3 1 chr3 105120047 105122104 -112915054 - L1PA4 LINE L1 0 6155 4099 1444 17 0 6 chr3 105122105 105122282 -112914876 - L1P LINE L1 -1151 4995 4820 * 5439 29 0 0 chr3 105122273 105122939 -112914219 + L1P LINE L1 3635 4300 -1846 195 100 0 0 chr3 105123317 105123347 -112913811 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 190 361 0 0 chr3 105124817 105124900 -112912258 + MIR SINE MIR 174 256 -6 707 299 105 56 chr3 105125657 105126284 -112910874 - L2 LINE L2 -15 3298 2644 181 322 68 42 chr3 105126302 105126420 -112910738 - L2 LINE L2 -562 2752 2632 610 231 39 39 chr3 105126583 105126765 -112910393 + MLT1C LTR MaLR 234 415 -52 2870 79 0 11 chr3 105126929 105127308 -112909850 - THE1C LTR MaLR 0 375 1 3000 110 2 2 chr3 105127308 105127755 -112909403 - THE1C-int LTR MaLR 0 1580 1134 20531 32 0 0 chr3 105127783 105131027 -112906131 - L1PA3 LINE L1 0 6155 2913 645 24 0 0 chr3 105131027 105131100 -112906058 - L1PA2 LINE L1 0 6155 6074 20754 48 50 3 chr3 105131100 105133887 -112903271 - L1PA3 LINE L1 -3228 2918 2 7146 109 55 2 chr3 105133880 105134975 -112902183 - THE1C-int LTR MaLR -427 1153 1 * 2740 96 5 3 chr3 105134975 105135349 -112901809 - THE1C LTR MaLR 0 375 1 475 250 127 0 chr3 105135489 105135725 -112901433 - L1ME LINE L1 -318 5803 5538 277 212 99 26 chr3 105135794 105135945 -112901213 - L1ME LINE L1 -749 5429 5268 1265 269 135 2 chr3 105136058 105136543 -112900615 - MLT1H1 LTR MaLR 0 555 10 21 0 0 0 chr3 105136690 105136711 -112900447 + AT_rich Low_complexity Low_complexity 1 21 0 478 242 53 23 chr3 105137560 105137692 -112899466 + L2 LINE L2 3176 3311 -2 871 232 10 5 chr3 105138201 105138408 -112898750 - MER3 DNA MER1_type 0 209 2 2464 53 3 7 chr3 105138564 105138865 -112898293 - AluY SINE Alu -11 300 1 22 0 0 0 chr3 105141771 105141793 -112895365 + AT_rich Low_complexity Low_complexity 1 22 0 189 174 22 22 chr3 105141961 105142007 -112895151 + L2 LINE L2 3264 3309 -4 27 62 0 0 chr3 105142442 105142490 -112894668 + AT_rich Low_complexity Low_complexity 1 48 0 323 291 19 29 chr3 105142496 105142599 -112894559 + MIR3 SINE MIR 2 103 -105 328 292 0 62 chr3 105142667 105142797 -112894361 - MIR SINE MIR -51 211 90 1315 139 25 108 chr3 105142904 105143257 -112893901 + MER33 DNA MER1_type 1 324 0 21 0 0 0 chr3 105143642 105143663 -112893495 + AT_rich Low_complexity Low_complexity 1 21 0 203 341 0 34 chr3 105143836 105143924 -112893234 - MIR SINE MIR -2 260 176 238 342 35 18 chr3 105144056 105144170 -112892988 - L2 LINE L2 0 3272 3157 22 0 0 0 chr3 105144340 105144362 -112892796 + AT_rich Low_complexity Low_complexity 1 22 0 2357 116 0 0 chr3 105144684 105144995 -112892163 - AluSx SINE Alu -1 311 1 26 0 0 0 chr3 105145242 105145268 -112891890 + AT_rich Low_complexity Low_complexity 1 26 0 357 307 61 0 chr3 105145805 105145919 -112891239 - MIR3 SINE MIR -1 207 87 1996 115 28 3 chr3 105145920 105146207 -112890951 + AluSx SINE Alu 7 300 -12 24 0 0 0 chr3 105146682 105146706 -112890452 + AT_rich Low_complexity Low_complexity 1 24 0 328 320 56 0 chr3 105146871 105146996 -112890162 + MIR SINE MIR 129 260 -2 21 0 0 0 chr3 105147009 105147030 -112890128 + AT_rich Low_complexity Low_complexity 1 21 0 206 349 97 11 chr3 105147034 105147209 -112889949 + L2 LINE L2 2847 3036 -236 553 262 33 33 chr3 105147545 105147728 -112889430 + MIR3 SINE MIR 22 204 -4 775 167 205 0 chr3 105147741 105147897 -112889261 - MER5A DNA MER1_type 0 189 2 575 260 80 40 chr3 105148390 105148590 -112888568 - MIR SINE MIR -11 251 44 216 267 0 69 chr3 105149694 105149795 -112887363 - MIR SINE MIR -69 193 100 979 285 149 20 chr3 105150017 105150846 -112886312 - L2 LINE L2 0 3313 2381 550 246 41 0 chr3 105151664 105151786 -112885372 + L2 LINE L2 3187 3313 0 436 123 68 0 chr3 105152626 105152699 -112884459 + MADE1 DNA Mariner 1 78 -2 311 313 85 28 chr3 105153205 105153381 -112883777 - MER5A DNA MER1_type -2 187 2 280 294 50 42 chr3 105153381 105153498 -112883660 + L2 LINE L2 3147 3264 -8 372 203 14 0 chr3 105153509 105153578 -112883580 - MIR SINE MIR -21 241 172 879 245 157 44 chr3 105153590 105153933 -112883225 + L2 LINE L2 2932 3313 0 281 295 16 41 chr3 105155952 105156074 -112881084 - MIR SINE MIR -102 160 42 1591 309 70 8 chr3 105156937 105157538 -112879620 - MER115 DNA AcHobo 0 693 56 867 254 7 75 chr3 105158102 105158381 -112878777 - MIR SINE MIR 0 262 3 503 338 7 0 chr3 105159155 105159300 -112877858 + MIR SINE MIR 12 157 -105 657 89 0 10 chr3 105159332 105159433 -112877725 - AluSg/x SINE Alu 0 312 213 371 218 0 0 chr3 105159482 105159560 -112877598 + MIR SINE MIR 184 261 -1 376 260 110 27 chr3 105160854 105161000 -112876158 - MIR SINE MIR -104 104 1 2268 105 3 0 chr3 105161312 105161608 -112875550 + AluSp SINE Alu 1 297 -16 537 329 73 8 chr3 105163009 105163243 -112873915 - MIR SINE MIR -12 250 2 535 329 55 8 chr3 105163683 105163920 -112873238 + MIR SINE MIR 14 261 -1 242 216 68 57 chr3 105164207 105164284 -112872874 - MER34B LTR ERV1 0 565 485 2221 104 3 0 chr3 105164284 105164572 -112872586 + AluSg SINE Alu 1 289 -21 1228 173 128 93 chr3 105164574 105165039 -112872119 - MER39 LTR ERV1 -65 642 12 293 303 34 11 chr3 105165108 105165197 -112871961 - L2 LINE L2 0 3272 3182 829 319 91 11 chr3 105165375 105165920 -112871238 - L2 LINE L2 -20 3293 2703 2745 141 72 20 chr3 105166747 105167286 -112869872 + L1MC1 LINE L1 5767 6333 0 817 273 12 39 chr3 105167562 105167818 -112869340 + MIR SINE MIR 10 258 -4 21 36 0 0 chr3 105168228 105168256 -112868902 + AT_rich Low_complexity Low_complexity 1 28 0 270 81 0 0 chr3 105168447 105168484 -112868674 + (TA)n Simple_repeat Simple_repeat 2 38 0 2273 124 0 0 chr3 105168484 105168790 -112868368 - AluSx SINE Alu -6 306 1 181 361 76 17 chr3 105169380 105169499 -112867659 + L2 LINE L2 3147 3272 0 4107 120 18 2 chr3 105171225 105171848 -112865310 - MER41B LTR ERV1 0 635 3 220 320 27 13 chr3 105172930 105173005 -112864153 - MIR3 SINE MIR -21 187 112 1019 242 20 25 chr3 105174753 105174997 -112862161 - MIR SINE MIR 0 262 20 256 208 19 0 chr3 105175091 105175144 -112862014 - MIR3 SINE MIR -47 161 108 2299 100 0 0 chr3 105177037 105177336 -112859822 - AluSx SINE Alu -13 299 1 355 311 28 0 chr3 105177387 105177493 -112859665 - MIR3 SINE MIR -12 196 88 519 359 106 0 chr3 105177620 105177865 -112859293 + L3b LINE CR1 1192 1462 -121 1595 170 52 78 chr3 105178195 105178578 -112858580 - THE1C LTR MaLR -2 373 1 245 261 26 35 chr3 105178882 105178997 -112858161 + L3 LINE CR1 800 913 -664 1858 154 0 126 chr3 105179037 105179433 -112857725 - MER7A DNA MER2_type -1 345 2 307 267 69 30 chr3 105179560 105179691 -112857467 - LTR37B LTR ERV1 -332 136 1 1999 161 72 3 chr3 105180194 105180554 -112856604 + MLT1B LTR MaLR 1 385 -5 417 306 52 58 chr3 105180777 105180884 -112856274 + L2 LINE L2 3006 3112 -201 2111 181 22 19 chr3 105180884 105181248 -112855910 + MLT1A1 LTR MaLR 1 365 0 417 306 52 58 chr3 105181248 105181450 -112855708 + L2 LINE L2 3112 3313 0 439 343 17 11 chr3 105182232 105182410 -112854748 - MIR SINE MIR -64 198 20 348 77 0 0 chr3 105182496 105182548 -112854610 + (CA)n Simple_repeat Simple_repeat 2 53 0 206 291 114 13 chr3 105183253 105183332 -112853826 - MIR3 SINE MIR -3 205 119 185 340 0 70 chr3 105183587 105183687 -112853471 + L2 LINE L2 3128 3220 -52 861 266 130 6 chr3 105184780 105185103 -112852055 - MLT1J LTR MaLR -148 363 1 359 189 32 32 chr3 105185937 105186032 -112851126 - L2 LINE L2 0 3313 3219 219 259 0 0 chr3 105186495 105186549 -112850609 + MIR SINE MIR 99 152 -56 255 286 0 0 chr3 105186630 105186693 -112850465 - L2 LINE L2 -6 3307 3245 199 305 33 66 chr3 105187242 105187393 -112849765 - MIR SINE MIR -104 158 13 21 0 0 0 chr3 105187635 105187656 -112849502 + AT_rich Low_complexity Low_complexity 1 21 0 1999 163 20 40 chr3 105187660 105188059 -112849099 + L1MA7 LINE L1 5885 6275 -16 207 0 0 0 chr3 105188086 105188109 -112849049 + (CA)n Simple_repeat Simple_repeat 2 24 0 403 211 89 16 chr3 105188110 105188233 -112848925 + L1ME4a LINE L1 5962 6093 -28 2247 122 0 0 chr3 105188390 105188701 -112848457 - AluSx SINE Alu -1 311 1 215 250 0 0 chr3 105191451 105191495 -112845663 - L2 LINE L2 -19 3253 3210 2154 127 3 0 chr3 105191922 105192221 -112844937 - AluSx SINE Alu -12 300 1 282 206 0 0 chr3 105193268 105193331 -112843827 + (TG)n Simple_repeat Simple_repeat 2 64 0 1253 272 78 25 chr3 105193953 105194390 -112842768 - MLT1J LTR MaLR -38 473 14 2347 76 10 20 chr3 105195125 105195428 -112841730 + AluSc SINE Alu 1 300 -9 2189 134 62 30 chr3 105196816 105197188 -112839970 - MLT1B LTR MaLR -4 386 3 442 376 12 6 chr3 105198285 105198450 -112838708 + MIR SINE MIR 17 182 -80 365 118 0 0 chr3 105198482 105198533 -112838625 - MSTA LTR MaLR 0 428 378 1247 128 0 0 chr3 105198533 105198705 -112838453 - FRAM SINE Alu -6 170 1 2169 153 48 3 chr3 105198705 105199077 -112838081 - MSTA LTR MaLR -39 389 1 10426 172 14 2 chr3 105199077 105200709 -112836449 - MSTA-int LTR MaLR 0 1651 1 936 116 61 7 chr3 105200709 105200856 -112836302 - MSTA LTR MaLR 0 428 274 576 205 84 176 chr3 105200871 105200995 -112836163 - MIR SINE MIR -8 254 167 1747 173 10 7 chr3 105200995 105201295 -112835863 + AluJo SINE Alu 3 303 -9 576 205 84 176 chr3 105201295 105201443 -112835715 - MIR SINE MIR -95 167 7 4479 115 44 34 chr3 105201667 105202398 -112834760 + L1MB3 LINE L1 5445 6182 -1 1888 253 51 14 chr3 105203100 105203586 -112833572 - MLT1G1 LTR MaLR -91 504 1 2911 317 93 32 chr3 105204017 105206345 -112830813 - ERVL LTR ERVL -2062 3592 1155 203 292 0 0 chr3 105206709 105206757 -112830401 + MER5B DNA MER1_type 131 178 0 254 290 28 19 chr3 105206851 105206958 -112830200 + L2 LINE L2 1513 1620 -1694 351 283 139 11 chr3 105206981 105207161 -112829997 + L2 LINE L2 1994 2196 -1118 422 301 221 4 chr3 105207162 105207411 -112829747 + L2 LINE L2 2550 2852 -462 358 198 93 0 chr3 105207866 105207952 -112829206 + MIR SINE MIR 71 164 -98 4244 118 52 2 chr3 105208198 105208781 -112828377 - LTR9 LTR ERV1 0 612 1 480 248 25 0 chr3 105208882 105209003 -112828155 + LTR16C LTR ERVL 365 488 -3 751 254 113 8 chr3 105209013 105209225 -112827933 - LTR33 LTR ERVL -2 519 281 371 221 127 51 chr3 105209225 105209383 -112827775 + MER96 DNA MER1_type? 2 171 -4 270 327 39 39 chr3 105209952 105210056 -112827102 - MIR3 SINE MIR -24 184 81 255 138 42 234 chr3 105210408 105210575 -112826583 - MER58C DNA MER1_type -2 213 79 938 196 0 44 chr3 105210577 105210781 -112826377 + AluJo SINE Alu 1 195 -117 288 227 54 42 chr3 105210855 105210872 -112826286 - L1ME LINE L1 -665 5497 5482 2290 113 3 0 chr3 105210872 105211183 -112825975 - AluSq SINE Alu -1 312 1 288 227 54 42 chr3 105211183 105211308 -112825850 - L1ME LINE L1 -680 5482 5353 505 252 58 14 chr3 105213098 105213237 -112823921 + MIR SINE MIR 117 261 -1 480 268 32 25 chr3 105213259 105213416 -112823742 - MIR3 SINE MIR -2 206 49 205 259 52 17 chr3 105214008 105214066 -112823092 + MIR SINE MIR 50 109 -153 351 293 153 7 chr3 105214083 105214233 -112822925 - MIR SINE MIR -9 253 82 2539 62 0 3 chr3 105214388 105214695 -112822463 - AluSg SINE Alu -4 306 1 2333 98 0 0 chr3 105214843 105215139 -112822019 - AluSq SINE Alu -17 296 1 184 367 56 11 chr3 105215349 105215439 -112821719 + L2 LINE L2 2247 2340 -974 263 243 29 0 chr3 105215943 105216013 -112821145 + MER94 DNA DNA 10 81 -53 2008 128 0 0 chr3 105216426 105216708 -112820450 + AluSx SINE Alu 21 302 -10 474 263 15 30 chr3 105216773 105216906 -112820252 - L2 LINE L2 -980 2334 2204 2183 105 0 3 chr3 105217091 105217411 -112819747 + AluSq SINE Alu 1 319 0 769 239 4 112 chr3 105217419 105217679 -112819479 - MIR SINE MIR -12 250 19 972 298 101 42 chr3 105217900 105218556 -112818602 + L2 LINE L2 2250 3002 -311 2235 124 0 0 chr3 105218556 105218863 -112818295 - AluSg SINE Alu -3 307 1 972 298 101 42 chr3 105218863 105219182 -112817976 + L2 LINE L2 3002 3301 -12 2155 112 3 6 chr3 105220407 105220719 -112816439 - AluY SINE Alu 0 311 1 1086 193 69 17 chr3 105220957 105221190 -112815968 - MER58B DNA MER1_type 0 341 97 21 0 0 0 chr3 105221753 105221774 -112815384 + AT_rich Low_complexity Low_complexity 1 21 0 2033 152 0 0 chr3 105221831 105222133 -112815025 - AluSx SINE Alu -9 303 2 2327 73 7 10 chr3 105222245 105222546 -112814612 - AluSp SINE Alu -13 300 1 182 318 0 45 chr3 105222973 105223039 -112814119 - L2 LINE L2 0 3272 3210 1649 164 10 39 chr3 105223093 105223398 -112813760 - AluJo SINE Alu -16 296 1 390 310 108 13 chr3 105224120 105224278 -112812880 - MIR3 SINE MIR -11 197 25 346 263 66 36 chr3 105225947 105226084 -112811074 + L1ME4a LINE L1 5955 6095 -26 286 330 48 58 chr3 105226315 105226503 -112810655 - MER5A DNA MER1_type -3 186 1 468 279 58 37 chr3 105228887 105229077 -112808081 + MIR3 SINE MIR 21 177 -31 241 340 21 0 chr3 105229448 105229542 -112807616 + MIR3 SINE MIR 110 205 -3 240 288 281 7 chr3 105229652 105229798 -112807360 - MER5A DNA MER1_type -3 186 1 274 331 113 0 chr3 105229937 105230061 -112807097 - L2 LINE L2 -211 3061 2924 252 268 132 42 chr3 105230382 105230572 -112806586 - L2 LINE L2 -822 2492 2286 301 363 48 24 chr3 105232772 105232939 -112804219 + MIR SINE MIR 18 191 -66 824 195 68 44 chr3 105234074 105234279 -112802879 + MER20 DNA MER1_type 3 212 -7 2433 83 7 0 chr3 105234338 105234639 -112802519 - AluSg SINE Alu -7 303 1 386 291 171 19 chr3 105234823 105234981 -112802177 - MIR3 SINE MIR -7 201 20 6207 69 3 7 chr3 105235750 105236610 -112800548 + L1PB1 LINE L1 5295 6151 0 1931 152 20 32 chr3 105237644 105237845 -112799313 - MER47B DNA MER2_type -1905 418 221 2115 128 21 18 chr3 105237845 105238181 -112798977 + MER1B DNA MER1_type 1 337 0 1931 152 20 32 chr3 105238181 105238321 -112798837 - MER47B DNA MER2_type -2102 221 81 337 273 17 28 chr3 105238325 105238435 -112798723 - MER5A DNA MER1_type -21 159 49 200 268 63 102 chr3 105238344 105238471 -112798687 + MER5A DNA MER1_type 52 173 -16 * 1135 144 229 30 chr3 105238824 105239149 -112798009 + THE1C LTR MaLR 3 373 -2 215 231 92 15 chr3 105241723 105241788 -112795370 - L2 LINE L2 -1 3271 3202 734 251 76 5 chr3 105245532 105245743 -112791415 + MIR SINE MIR 34 259 -3 2219 89 4 0 chr3 105246556 105246864 -112790294 - AluSc SINE Alu 0 309 1 716 169 247 17 chr3 105248667 105248845 -112788313 - MER20 DNA MER1_type 0 219 1 470 262 172 0 chr3 105249018 105249163 -112787995 - MER5A DNA MER1_type 0 189 20 374 301 58 39 chr3 105249518 105249674 -112787484 - MIR SINE MIR -1 261 103 460 220 23 8 chr3 105249854 105249986 -112787172 - Charlie2a DNA MER1_type 0 2862 2729 323 196 168 0 chr3 105249986 105250093 -112787065 - Charlie2a DNA MER1_type -1266 1596 1472 387 0 0 0 chr3 105250227 105250270 -112786888 + (CTCTG)n Simple_repeat Simple_repeat 1 43 0 501 174 58 25 chr3 105250423 105250544 -112786614 - Charlie2a DNA MER1_type -2657 125 1 356 304 6 50 chr3 105251080 105251241 -112785917 + L2 LINE L2 3159 3312 -1 1753 127 91 45 chr3 105252168 105252313 -112784845 - Charlie1b DNA MER1_type -2238 523 386 2221 110 0 10 chr3 105252313 105252614 -112784544 + AluY SINE Alu 2 299 -12 1753 127 91 45 chr3 105252614 105252895 -112784263 - Charlie1b DNA MER1_type -2375 386 77 182 150 75 0 chr3 105253347 105253387 -112783771 - L2 LINE L2 -13 3300 3258 770 219 24 52 chr3 105255907 105256148 -112781010 + MIR SINE MIR 3 230 -32 834 148 31 0 chr3 105256184 105256346 -112780812 + L1MA8 LINE L1 6121 6287 -4 978 164 35 66 chr3 105256598 105256824 -112780334 - MER20 DNA MER1_type 0 219 1 2105 131 14 35 chr3 105257177 105257521 -112779637 - MER1B DNA MER1_type 0 337 1 320 236 55 50 chr3 105257902 105258084 -112779074 - L1MC4a LINE L1 -1787 6021 5839 454 242 115 67 chr3 105258492 105258657 -112778501 - MIR SINE MIR -70 192 20 295 231 100 69 chr3 105258773 105258933 -112778225 + L2 LINE L2 2812 2976 -337 318 225 38 0 chr3 105258941 105259021 -112778137 + L2 LINE L2 3133 3215 -98 288 318 47 0 chr3 105259075 105259160 -112777998 + L2 LINE L2 3221 3309 -4 432 264 101 19 chr3 105259295 105259454 -112777704 - MIR SINE MIR -75 187 16 200 227 0 0 chr3 105259879 105259923 -112777235 + (TA)n Simple_repeat Simple_repeat 2 45 0 399 224 109 63 chr3 105265518 105265692 -112771466 - L2 LINE L2 -29 3284 3103 457 222 118 21 chr3 105266227 105266388 -112770770 + MIR3 SINE MIR 33 204 -4 486 0 0 0 chr3 105266395 105266449 -112770709 + (TG)n Simple_repeat Simple_repeat 1 54 0 22 0 0 0 chr3 105268267 105268289 -112768869 + AT_rich Low_complexity Low_complexity 1 22 0 35 0 0 0 chr3 105270208 105270243 -112766915 + GC_rich Low_complexity Low_complexity 1 35 0 207 246 0 0 chr3 105270371 105270428 -112766730 + (CGG)n Simple_repeat Simple_repeat 3 59 0 21 36 0 0 chr3 105270512 105270540 -112766618 + GC_rich Low_complexity Low_complexity 1 28 0 462 323 72 5 chr3 105272362 105272557 -112764601 - MIR SINE MIR -2 260 53 234 196 39 0 chr3 105272768 105272819 -112764339 + MER91B DNA MER1_type 78 130 -60 60 15 0 0 chr3 105274769 105274836 -112762322 + AT_rich Low_complexity Low_complexity 1 67 0 201 74 0 0 chr3 105274997 105275024 -112762134 + (TATATG)n Simple_repeat Simple_repeat 2 28 0 181 297 47 0 chr3 105275520 105275584 -112761574 - L3 LINE CR1 -5 1572 1506 2251 115 0 0 chr3 105275660 105275955 -112761203 - AluSx SINE Alu -17 295 1 501 187 27 120 chr3 105276636 105276786 -112760372 - MIR3 SINE MIR -3 205 70 288 284 134 16 chr3 105277366 105277493 -112759665 - L3 LINE CR1 -214 1363 1222 246 264 154 9 chr3 105277794 105277904 -112759254 - L3 LINE CR1 -593 984 859 560 275 217 0 chr3 105277983 105278172 -112758986 - MIR SINE MIR 0 262 33 276 317 117 17 chr3 105278311 105278431 -112758727 - MIR3 SINE MIR -23 185 54 181 234 0 21 chr3 105278756 105278803 -112758355 - L2 LINE L2 -18 3295 3250 183 129 0 0 chr3 105280013 105280044 -112757114 + (CA)n Simple_repeat Simple_repeat 2 32 0 207 325 0 36 chr3 105280431 105280514 -112756644 - L2 LINE L2 -8 3305 3226 1371 113 59 18 chr3 105280564 105280785 -112756373 + MER30 DNA MER1_type 1 230 0 2128 101 0 52 chr3 105280927 105281234 -112755924 + AluSx SINE Alu 7 297 -15 2234 89 17 0 chr3 105281239 105281530 -112755628 + AluSp SINE Alu 1 296 -17 1747 154 7 38 chr3 105282000 105282293 -112754865 - AluJb SINE Alu -28 284 1 891 183 39 13 chr3 105282475 105282628 -112754530 + AluJb SINE Alu 137 293 -19 207 0 0 0 chr3 105282741 105282764 -112754394 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 180 380 28 28 chr3 105282956 105283064 -112754094 - L3b LINE CR1 -98 1485 1378 595 325 92 22 chr3 105283205 105283836 -112753322 - L1MEd LINE L1 -3336 2793 2119 22 35 0 0 chr3 105284107 105284136 -112753022 + AT_rich Low_complexity Low_complexity 1 29 0 920 292 78 73 chr3 105284197 105285808 -112751350 - L1MEd LINE L1 -4579 1731 60 27 29 0 0 chr3 105286210 105286244 -112750914 + AT_rich Low_complexity Low_complexity 1 34 0 272 264 114 51 chr3 105286773 105287076 -112750082 - MLT1K LTR MaLR -158 430 131 2543 60 0 0 chr3 105287412 105287714 -112749444 - AluY SINE Alu -9 302 1 2099 111 0 36 chr3 105291326 105291632 -112745526 + AluSx SINE Alu 1 295 -17 2213 120 3 0 chr3 105292734 105293035 -112744123 + AluSx SINE Alu 1 302 -10 595 216 52 0 chr3 105294039 105294173 -112742985 + MIR SINE MIR 98 238 -24 312 224 0 0 chr3 105294335 105294393 -112742765 + L2 LINE L2 3215 3272 0 27 0 0 0 chr3 105294393 105294420 -112742738 + AT_rich Low_complexity Low_complexity 1 27 0 515 243 64 97 chr3 105294556 105294823 -112742335 - MIR SINE MIR 0 262 5 525 226 85 18 chr3 105294967 105295131 -112742027 - MER5B DNA MER1_type -3 175 1 202 204 0 37 chr3 105296548 105296602 -112740556 + L2 LINE L2 3262 3313 0 723 254 56 14 chr3 105297248 105297461 -112739697 + MIR SINE MIR 15 236 -26 234 228 35 0 chr3 105297464 105297508 -112739650 + (TATG)n Simple_repeat Simple_repeat 4 52 -10 2538 48 0 0 chr3 105297508 105297799 -112739359 - AluSg SINE Alu -19 291 1 234 228 35 0 chr3 105297799 105297811 -112739347 + (TATG)n Simple_repeat Simple_repeat 52 62 0 242 232 0 0 chr3 105298835 105298891 -112738267 + T-rich Low_complexity Low_complexity 1 56 0 240 350 158 19 chr3 105299053 105299636 -112737522 + L2 LINE L2 1710 2373 -941 701 274 12 32 chr3 105299792 105300040 -112737118 - L1ME3 LINE L1 -7 6155 5913 699 224 73 78 chr3 105300074 105300160 -112736998 - L1ME3 LINE L1 -607 5555 5470 1722 161 0 20 chr3 105300160 105300452 -112736706 + AluJb SINE Alu 1 286 -26 699 224 73 78 chr3 105300452 105300863 -112736295 - L1ME3 LINE L1 -692 5470 5060 208 200 0 25 chr3 105300864 105300904 -112736254 - MIR SINE MIR -136 126 88 246 264 54 74 chr3 105300904 105301052 -112736106 + MLT1J1 LTR MaLR 1 145 -301 31 58 0 0 chr3 105301220 105301272 -112735886 + AT_rich Low_complexity Low_complexity 1 52 0 2464 80 0 0 chr3 105301495 105301795 -112735363 - AluY SINE Alu -10 301 2 271 176 20 0 chr3 105302158 105302209 -112734949 + L2 LINE L2 3221 3272 0 377 291 0 36 chr3 105302671 105302780 -112734378 - MER5A DNA MER1_type -67 122 18 659 235 94 37 chr3 105302780 105303026 -112734132 + MIR SINE MIR 1 261 -1 41 48 0 0 chr3 105305557 105305619 -112731539 + AT_rich Low_complexity Low_complexity 1 62 0 256 301 56 92 chr3 105307186 105307312 -112729846 + MIR3 SINE MIR 19 138 -70 2178 100 0 0 chr3 105307312 105307630 -112729528 + AluSg SINE Alu 1 318 0 256 301 56 92 chr3 105307630 105307698 -112729460 + MIR3 SINE MIR 138 207 -1 321 292 48 42 chr3 105307973 105308141 -112729017 - MIR3 SINE MIR -1 207 39 458 301 108 14 chr3 105308853 105309066 -112728092 + MIR SINE MIR 22 254 -8 1763 221 137 9 chr3 105309069 105309102 -112728056 - MLT2B1 LTR ERVL 0 520 493 432 0 0 0 chr3 105309102 105309150 -112728008 + (TG)n Simple_repeat Simple_repeat 2 49 0 1763 221 137 9 chr3 105309150 105309577 -112727581 - MLT2B1 LTR ERVL -27 493 1 607 309 67 24 chr3 105310620 105310996 -112726162 - L1ME4a LINE L1 -219 5902 5511 2082 144 42 21 chr3 105312170 105312339 -112724819 + L1M4 LINE L1 5434 5598 -586 1615 176 62 26 chr3 105312339 105312691 -112724467 - MLT1A1 LTR MaLR 0 365 1 2082 144 42 21 chr3 105312691 105312902 -112724256 + L1M4 LINE L1 5598 5822 -362 2012 151 0 3 chr3 105312910 105313215 -112723943 + AluJb SINE Alu 1 304 -8 1149 155 73 14 chr3 105313220 105313439 -112723719 - L1MB5 LINE L1 -141 6033 5802 402 151 0 0 chr3 105314317 105314390 -112722768 + (CA)n Simple_repeat Simple_repeat 1 73 0 23 0 0 0 chr3 105316164 105316187 -112720971 + AT_rich Low_complexity Low_complexity 1 23 0 2437 81 3 0 chr3 105316235 105316542 -112720616 + AluSp SINE Alu 1 308 -5 377 303 0 42 chr3 105318442 105318561 -112718597 - L2 LINE L2 -23 3249 3136 2214 109 3 10 chr3 105319081 105319394 -112717764 + AluSp SINE Alu 1 311 -2 376 330 36 9 chr3 105319712 105319824 -112717334 - L2 LINE L2 -35 3237 3123 25 0 0 0 chr3 105324515 105324540 -112712618 + AT_rich Low_complexity Low_complexity 1 25 0 1088 235 43 8 chr3 105326545 105326779 -112710379 - MIR SINE MIR -20 242 1 239 174 35 23 chr3 105327049 105327135 -112710023 - Charlie7 DNA MER1_type -67 2545 2459 781 242 248 31 chr3 105327462 105327913 -112709245 - MLT1H LTR MaLR 0 549 1 2299 86 0 0 chr3 105528056 105528359 -112508799 - AluSg SINE Alu 0 303 1 1910 142 7 19 chr3 105528988 105529297 -112507861 - AluJo SINE Alu -7 305 1 1829 138 33 13 chr3 105529750 105530055 -112507103 - AluJo SINE Alu -1 311 1 3920 161 92 30 chr3 105530194 105531026 -112506132 - Cheshire DNA MER1_type -1 2419 1536 627 204 15 15 chr3 105531032 105531164 -112505994 + MER49 LTR ERV1 1 132 -791 26 0 0 0 chr3 105531266 105531292 -112505866 + AT_rich Low_complexity Low_complexity 1 26 0 1248 175 12 125 chr3 105531301 105531638 -112505520 - AluJo SINE Alu -3 299 1 1093 246 56 41 chr3 105531676 105531999 -112505159 - L1M4 LINE L1 -1178 4968 4636 2012 151 0 10 chr3 105531999 105532310 -112504848 - AluSq SINE Alu -5 308 1 1093 246 56 41 chr3 105532310 105532397 -112504761 - L1M4 LINE L1 -1510 4636 4552 2011 151 0 26 chr3 105532397 105532748 -112504410 - MER4E LTR ERV1 0 766 425 765 145 0 43 chr3 105532870 105533008 -112504150 - FLAM_C SINE Alu -1 132 1 768 92 0 0 chr3 105533280 105533378 -112503780 - HY3 scRNA scRNA -3 98 1 1729 159 14 4 chr3 105533436 105533713 -112503445 - AluJb SINE Alu -32 280 1 1537 197 45 34 chr3 105533762 105534118 -112503040 + MLT1A1 LTR MaLR 1 360 -5 812 305 71 43 chr3 105534122 105534333 -112502825 - L1MEd LINE L1 -5446 673 469 2167 115 7 0 chr3 105534333 105534628 -112502530 + AluSp SINE Alu 5 301 -12 812 305 71 43 chr3 105534628 105534855 -112502303 - L1MEd LINE L1 -5650 469 223 755 133 0 0 chr3 105535141 105535246 -112501912 + FLAM_C SINE Alu 30 134 -9 758 156 0 52 chr3 105535421 105535575 -112501583 - AluSg/x SINE Alu -3 307 162 1242 162 14 0 chr3 105535575 105535785 -112501373 - AluJo SINE Alu -13 299 87 827 156 7 0 chr3 105535785 105535920 -112501238 - MER33 DNA MER1_type -187 137 2 1682 171 10 14 chr3 105536487 105536780 -112500378 - AluJo SINE Alu -20 292 1 2038 113 13 29 chr3 105536827 105537138 -112500020 + AluSx SINE Alu 1 306 -6 2215 106 0 28 chr3 105537462 105537782 -112499376 + AluSq SINE Alu 1 311 -2 406 146 313 0 chr3 105537782 105537926 -112499232 + MER33 DNA MER1_type 134 322 -2 2100 112 3 7 chr3 105537964 105538268 -112498890 + AluSp SINE Alu 2 304 -9 457 339 70 4 chr3 105538277 105538507 -112498651 - MIR SINE MIR -14 248 4 23 68 0 0 chr3 105538873 105538917 -112498241 + AT_rich Low_complexity Low_complexity 1 44 0 786 161 0 134 chr3 105538921 105539107 -112498051 - LTR24 LTR ERV1 -301 166 6 806 230 0 0 chr3 105539107 105539255 -112497903 - FAM SINE Alu -37 148 1 388 250 128 20 chr3 105539298 105539494 -112497664 - L1MC4a LINE L1 -1644 6164 5948 906 136 0 0 chr3 105539540 105539665 -112497493 + FLAM_C SINE Alu 1 125 -18 2278 105 3 0 chr3 105539903 105540199 -112496959 + AluSp SINE Alu 1 297 -16 2786 26 0 0 chr3 105540199 105540510 -112496648 + AluYa5 SINE Alu 1 311 0 1930 168 7 0 chr3 105540888 105541186 -112495972 - AluJo SINE Alu -12 300 1 2226 103 3 10 chr3 105542464 105542766 -112494392 + AluSx SINE Alu 1 300 -12 2300 86 30 0 chr3 105543980 105544284 -112492874 - AluSq SINE Alu 0 313 1 2428 169 65 180 chr3 105544357 105544744 -112492414 + Cheshire DNA MER1_type 1 401 -2019 798 188 85 6 chr3 105544744 105544909 -112492249 + AluJo SINE Alu 119 296 -16 2428 169 65 180 chr3 105544909 105545303 -112491855 + Cheshire DNA MER1_type 401 838 -1582 872 154 0 0 chr3 105545303 105545426 -112491732 + FLAM_C SINE Alu 1 123 -10 60 15 0 0 chr3 105545426 105545493 -112491665 + AT_rich Low_complexity Low_complexity 1 67 0 484 172 71 10 chr3 105545495 105545594 -112491564 + Cheshire DNA MER1_type 828 932 -1488 570 176 147 0 chr3 105545605 105545707 -112491451 + FLAM_A SINE Alu 10 126 -16 2521 192 73 29 chr3 105545750 105546339 -112490819 + Cheshire DNA MER1_type 917 1531 -889 2359 144 3 34 chr3 105546344 105546403 -112490755 - MER49 LTR ERV1 -11 912 853 2231 94 0 39 chr3 105546403 105546710 -112490448 + AluSq SINE Alu 1 295 -18 2359 144 3 34 chr3 105546710 105547032 -112490126 - MER49 LTR ERV1 -70 853 543 312 317 20 0 chr3 105547419 105547520 -112489638 + MIR SINE MIR 160 262 0 2445 58 3 0 chr3 105547785 105548079 -112489079 + AluSp SINE Alu 1 295 -18 1038 167 113 26 chr3 105549810 105550079 -112487079 + L1MB4 LINE L1 5411 5706 -465 260 200 31 0 chr3 105550082 105550147 -112487011 + FLAM_A SINE Alu 2 68 -64 328 224 2 0 chr3 105550162 105550237 -112486921 + L1MB4 LINE L1 6038 6112 -68 1372 181 33 23 chr3 105550249 105550548 -112486610 - AluJb SINE Alu 0 312 11 1973 133 0 23 chr3 105550585 105550887 -112486271 + AluSg SINE Alu 1 295 -15 787 111 7 97 chr3 105550897 105551041 -112486117 + AluJo/FLAM SINE Alu 2 132 -180 2021 130 9 19 chr3 105551043 105551358 -112485800 + AluSx SINE Alu 1 312 0 2040 100 28 17 chr3 105552672 105552841 -112484317 - AluSx SINE Alu -18 294 119 207 0 0 0 chr3 105552841 105552864 -112484294 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2040 100 28 17 chr3 105552864 105552985 -112484173 - AluSx SINE Alu -193 119 1 1181 242 56 3 chr3 105553324 105553609 -112483549 - AluJb SINE Alu -2 300 1 316 194 140 0 chr3 105553699 105553792 -112483366 - L1MD3 LINE L1 -223 7772 7667 1610 151 24 38 chr3 105554382 105554674 -112482484 + AluJb SINE Alu 6 293 -19 768 84 19 9 chr3 105554911 105555018 -112482140 + AluY SINE Alu 187 294 -17 31 44 0 0 chr3 105555506 105555551 -112481607 + AT_rich Low_complexity Low_complexity 1 45 0 1921 72 126 4 chr3 105555557 105555819 -112481339 - AluSc SINE Alu -5 294 1 668 130 35 0 chr3 105558443 105558558 -112478600 - FLAM_C SINE Alu -24 119 1 218 396 90 0 chr3 105558848 105558959 -112478199 + MIR3 SINE MIR 63 183 -25 458 140 140 93 chr3 105559296 105559403 -112477755 - AluJb SINE Alu -23 289 178 254 258 0 15 chr3 105559406 105559472 -112477686 - MIR SINE MIR -119 143 79 1737 98 64 0 chr3 105559635 105559939 -112477219 - AluSx SINE Alu 0 321 1 1509 147 78 4 chr3 105560023 105560281 -112476877 - AluSx SINE Alu -1 311 35 786 468 60 0 chr3 105560555 105560837 -112476321 + AluSg SINE Alu 1 299 -1 446 149 58 11 chr3 105560896 105560983 -112476175 + MER53 DNA DNA 16 106 -83 522 114 13 0 chr3 105561015 105561094 -112476064 - MER53 DNA DNA -88 101 22 514 134 12 0 chr3 105561021 105561103 -112476055 + MER53 DNA DNA 105 187 -2 * 230 319 44 0 chr3 105561118 105561209 -112475949 + MIR SINE MIR 153 247 -15 1557 163 136 0 chr3 105561409 105561667 -112475491 + AluJb SINE Alu 3 295 -7 2292 96 10 6 chr3 105562876 105563188 -112473970 - AluSq SINE Alu 0 313 1 780 172 39 0 chr3 105563793 105563921 -112473237 + FLAM_C SINE Alu 1 133 0 22 0 0 0 chr3 105563977 105563999 -112473159 + AT_rich Low_complexity Low_complexity 1 22 0 588 68 95 0 chr3 105564006 105564388 -112472770 + (TA)n Simple_repeat Simple_repeat 1 418 0 23 0 0 0 chr3 105564398 105564421 -112472737 + AT_rich Low_complexity Low_complexity 1 23 0 475 99 81 6 chr3 105564429 105564753 -112472405 + (TA)n Simple_repeat Simple_repeat 1 348 0 2206 90 0 7 chr3 105564753 105565043 -112472115 - AluSp SINE Alu -25 288 1 180 227 106 0 chr3 105565455 105565521 -112471637 + MIR3 SINE MIR 122 194 -14 487 281 32 77 chr3 105566808 105567029 -112470129 - MIR SINE MIR 0 262 52 221 315 99 0 chr3 105567051 105567162 -112469996 - MIR SINE MIR -15 247 126 264 311 142 0 chr3 105568015 105568121 -112469037 - L2 LINE L2 0 3313 3193 360 383 7 21 chr3 105568834 105568975 -112468183 + MIR3 SINE MIR 19 157 -51 825 276 49 8 chr3 105568977 105569223 -112467935 - MIR SINE MIR -3 259 4 2258 93 7 13 chr3 105569251 105569561 -112467597 - AluSq SINE Alu -5 308 1 361 235 91 15 chr3 105569927 105570059 -112467099 + MIR SINE MIR 67 208 -54 493 250 100 90 chr3 105570178 105570478 -112466680 - MLT1I LTR MaLR -37 372 70 1020 120 0 46 chr3 105570514 105570689 -112466469 - AluSg/x SINE Alu -20 292 126 226 179 0 0 chr3 105570689 105570728 -112466430 - MER116 DNA Mariner -34 46 8 911 209 17 6 chr3 105572448 105572620 -112464538 + FAM SINE Alu 1 174 -1 2348 94 3 0 chr3 105573115 105573412 -112463746 + AluSp SINE Alu 1 298 -15 235 301 14 14 chr3 105573435 105573508 -112463650 - L2 LINE L2 -12 3301 3229 1503 154 45 21 chr3 105573917 105574203 -112462955 + AluSx SINE Alu 1 293 -19 4468 130 29 28 chr3 105574434 105574602 -112462556 - L1MA5 LINE L1 0 6300 6134 1397 180 64 14 chr3 105574602 105574885 -112462273 - AluJo SINE Alu -15 297 1 4468 130 29 28 chr3 105574885 105575480 -112461678 - L1MA5 LINE L1 -166 6134 5536 755 73 0 0 chr3 105575483 105575579 -112461579 + AluSp/q SINE Alu 208 303 -10 289 264 66 0 chr3 105575799 105575890 -112461268 + L1MC4a LINE L1 5853 5949 -1859 1429 201 52 24 chr3 105575900 105576188 -112460970 + AluJb SINE Alu 3 298 -4 2226 107 0 7 chr3 105576188 105576497 -112460661 + AluSc SINE Alu 1 307 -2 592 247 103 0 chr3 105576745 105576939 -112460219 + MER58A DNA MER1_type 9 223 -1 632 302 78 23 chr3 105578877 105579135 -112458023 + HAL1 LINE L1 39 310 -2197 263 305 85 8 chr3 105579151 105579269 -112457889 + HAL1 LINE L1 414 540 -1967 217 0 0 0 chr3 105579323 105579347 -112457811 + (TTTTG)n Simple_repeat Simple_repeat 2 180 0 297 128 0 0 chr3 105579347 105579386 -112457772 - Alu SINE Alu -19 281 243 2071 140 0 3 chr3 105579492 105579792 -112457366 + AluSx SINE Alu 1 299 -13 1229 111 0 0 chr3 105579792 105579954 -112457204 + AluSg/x SINE Alu 132 293 -17 706 205 61 36 chr3 105579963 105580022 -112457136 - L1ME LINE L1 -345 5817 5761 3701 135 42 13 chr3 105580022 105580149 -112457009 - MER41B LTR ERV1 -2 633 511 2286 109 0 3 chr3 105580149 105580460 -112456698 + AluSg SINE Alu 1 310 0 3701 135 42 13 chr3 105580460 105580947 -112456211 - MER41B LTR ERV1 -124 511 1 706 205 61 36 chr3 105580947 105581108 -112456050 - L1ME LINE L1 -401 5761 5607 3348 173 68 19 chr3 105581108 105581801 -112455357 + LTR8A LTR ERV1 1 727 0 706 205 61 36 chr3 105581801 105581823 -112455335 - L1ME LINE L1 -555 5607 5587 2071 104 65 0 chr3 105581832 105582111 -112455047 + AluSx SINE Alu 1 297 -15 1791 155 150 6 chr3 105582112 105582453 -112454705 - MSTA LTR MaLR -37 391 2 384 286 43 0 chr3 105582536 105582676 -112454482 - L1ME LINE L1 -880 5266 5121 719 183 15 0 chr3 105582732 105582863 -112454295 + FLAM_C SINE Alu 1 133 0 3687 121 33 2 chr3 105582880 105583427 -112453731 - LTR6A LTR ERV1 0 564 1 52294 176 17 18 chr3 105583427 105592336 -112444822 - HERVS71 LTR ERV1 -69 8909 4 3617 123 31 11 chr3 105592338 105592891 -112444267 - LTR6A LTR ERV1 0 564 1 1087 114 13 13 chr3 105592891 105593049 -112444109 + AluSg/x SINE Alu 147 304 -8 1792 168 3 17 chr3 105593176 105593310 -112443848 + AluJb SINE Alu 1 135 -177 2412 91 3 0 chr3 105593310 105593617 -112443541 + AluY SINE Alu 1 308 -3 1792 168 3 17 chr3 105593617 105593779 -112443379 + AluJb SINE Alu 135 293 -19 183 42 0 0 chr3 105593907 105593931 -112443227 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1872 107 74 0 chr3 105593934 105594204 -112442954 - AluSp SINE Alu -22 291 2 750 135 38 60 chr3 105594233 105594366 -112442792 + FLAM_C SINE Alu 1 130 -3 741 40 80 0 chr3 105594383 105594483 -112442675 + HY1 scRNA scRNA 1 108 -4 21 57 0 0 chr3 105594484 105594519 -112442639 + AT_rich Low_complexity Low_complexity 1 35 0 1840 256 175 30 chr3 105594519 105595293 -112441865 + HAL1 LINE L1 1033 1994 -513 2113 128 3 7 chr3 105595293 105595597 -112441561 - AluJb SINE Alu -9 303 1 1840 256 175 30 chr3 105595597 105595852 -112441306 + HAL1 LINE L1 1994 2211 -296 1725 197 0 7 chr3 105597290 105597590 -112439568 - AluJb SINE Alu -14 298 1 1744 121 73 0 chr3 105597643 105597916 -112439242 - L1PB1 LINE L1 0 6151 5859 652 147 0 0 chr3 105597918 105598013 -112439145 + AluSp/q SINE Alu 196 290 -23 2233 74 24 24 chr3 105598023 105598319 -112438839 + AluSg SINE Alu 1 296 -14 1441 91 10 0 chr3 105598336 105598535 -112438623 - L1PB1 LINE L1 -282 5869 5669 1487 178 10 59 chr3 105598540 105598844 -112438314 - AluJo SINE Alu -23 289 1 2076 129 3 7 chr3 105599021 105599323 -112437835 - AluSx SINE Alu -11 301 1 2192 120 0 25 chr3 105599386 105599702 -112437456 - AluSx SINE Alu -4 308 1 317 94 0 0 chr3 105599780 105599833 -112437325 + MER5C DNA MER1_type 72 124 -200 245 204 102 23 chr3 105599857 105599945 -112437213 + MER5C DNA MER1_type 230 324 0 41 21 0 0 chr3 105600180 105600228 -112436930 + AT_rich Low_complexity Low_complexity 1 48 0 2424 64 0 3 chr3 105600593 105600889 -112436269 + AluY SINE Alu 1 295 -16 2063 119 7 14 chr3 105601378 105601673 -112435485 + AluY SINE Alu 1 293 -18 265 161 54 0 chr3 105601995 105602051 -112435107 - L1MB8 LINE L1 -1 6177 6119 2075 135 0 3 chr3 105602214 105602511 -112434647 + AluSx SINE Alu 1 296 -16 740 150 16 31 chr3 105602532 105602659 -112434499 + FLAM_C SINE Alu 5 129 -4 517 275 47 26 chr3 105602709 105602902 -112434256 - L1M4 LINE L1 -6344 198 2 540 298 73 16 chr3 105603138 105603329 -112433829 - MLT1K LTR MaLR -304 284 83 2253 102 17 0 chr3 105604408 105604702 -112432456 - AluSx SINE Alu -12 300 2 1507 125 104 20 chr3 105607274 105607948 -112429210 + LTR1B LTR ERV1 1 826 0 1990 132 7 0 chr3 105608184 105608472 -112428686 + AluSq SINE Alu 6 295 -18 1389 221 35 27 chr3 105608473 105608839 -112428319 - L1ME2 LINE L1 -111 6053 5685 526 230 105 95 chr3 105608987 105609079 -112428079 - L1MC5 LINE L1 -52 7909 7819 2403 106 3 0 chr3 105609079 105609391 -112427767 - AluSq SINE Alu 0 313 1 1480 206 24 7 chr3 105609392 105609683 -112427475 - AluJo SINE Alu -12 300 5 526 230 105 95 chr3 105609683 105609715 -112427443 - L1MC5 LINE L1 -142 7819 7789 2203 185 53 68 chr3 105609715 105609744 -112427414 - MLT2B3 LTR ERVL -1 553 525 8619 48 0 0 chr3 105609744 105610713 -112426445 + LTR5 LTR ERVK 1 969 0 2203 185 53 68 chr3 105610713 105610729 -112426429 - MLT2B3 LTR ERVL -29 525 510 459 0 0 0 chr3 105610729 105610780 -112426378 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 2203 185 53 68 chr3 105610780 105611294 -112425864 - MLT2B3 LTR ERVL -44 510 1 526 230 105 95 chr3 105611294 105611344 -112425814 - L1MC5 LINE L1 -172 7789 7741 2022 150 7 3 chr3 105611344 105611644 -112425514 - AluSq SINE Alu -12 301 1 526 230 105 95 chr3 105611644 105611851 -112425307 - L1MC5 LINE L1 -220 7741 7517 1896 164 0 10 chr3 105611851 105612155 -112425003 - AluJo SINE Alu -11 301 1 526 230 105 95 chr3 105612155 105612177 -112424981 - L1MC5 LINE L1 -444 7517 7497 1137 218 21 29 chr3 105612177 105612420 -112424738 + MER45C DNA AcHobo 1 241 -712 1513 261 43 20 chr3 105612565 105612885 -112424273 + MER45C DNA AcHobo 547 879 -702 2325 94 3 16 chr3 105612885 105613194 -112423964 - AluSg SINE Alu -5 305 1 1513 261 43 20 chr3 105613194 105613271 -112423887 + MER45C DNA AcHobo 879 953 0 1816 102 20 0 chr3 105613284 105613530 -112423628 - AluSx SINE Alu -13 299 49 8621 43 1 1 chr3 105613530 105614499 -112422659 - LTR5 LTR ERVK 0 969 1 441 63 11 168 chr3 105614499 105614594 -112422564 - SVA Other Other -450 936 857 36552 91 5 5 chr3 105614594 105621684 -112415474 - HERVK LTR ERVK -95 7148 1 8273 48 7 7 chr3 105621684 105622653 -112414505 - LTR5 LTR ERVK 0 969 1 384 96 0 0 chr3 105622654 105622706 -112414452 - AluSx SINE Alu -249 52 1 1087 169 0 0 chr3 105623070 105623248 -112413910 - AluSg/x SINE Alu 0 310 133 571 354 57 0 chr3 105623294 105623574 -112413584 + LTR16A LTR ERVL 2 297 -153 650 191 0 0 chr3 105623581 105623696 -112413462 - FRAM SINE Alu -61 115 1 314 306 105 0 chr3 105623729 105623853 -112413305 + LTR16A LTR ERVL 314 450 0 1689 180 13 10 chr3 105623915 105624220 -112412938 + AluJb SINE Alu 1 306 -6 2174 99 46 0 chr3 105624328 105624611 -112412547 + AluSp SINE Alu 1 296 -17 541 207 27 9 chr3 105624720 105624831 -112412327 - MLT1F1 LTR MaLR -8 559 447 * 651 198 102 37 chr3 105624828 105625015 -112412143 + MLT1D LTR MaLR 307 505 0 1220 119 0 0 chr3 105625717 105625877 -112411281 - AluSx SINE Alu -152 160 1 183 156 0 0 chr3 105626031 105626063 -112411095 + (TA)n Simple_repeat Simple_repeat 2 33 0 1440 204 4 11 chr3 105626121 105626396 -112410762 + AluJo SINE Alu 1 273 -39 494 260 107 21 chr3 105626553 105626795 -112410363 - L1M4 LINE L1 -1905 4241 3979 880 146 0 0 chr3 105626834 105626964 -112410194 + FLAM_C SINE Alu 4 133 0 1315 195 0 5 chr3 105627015 105627236 -112409922 + AluJo SINE Alu 1 220 -92 370 149 15 30 chr3 105627236 105627303 -112409855 + AluSg/x SINE Alu 84 149 -151 21 0 0 0 chr3 105627564 105627585 -112409573 + AT_rich Low_complexity Low_complexity 1 21 0 517 291 54 43 chr3 105627689 105627904 -112409254 + MER21B LTR ERV1 98 318 -545 2401 104 3 0 chr3 105627904 105628212 -112408946 + AluSp SINE Alu 1 309 -4 517 291 54 43 chr3 105628212 105628254 -112408904 + MER21B LTR ERV1 318 358 -505 3224 205 7 12 chr3 105628256 105628861 -112408297 + LTR27 LTR ERV1 3 604 -32 806 203 156 77 chr3 105628901 105629005 -112408153 + MER21B LTR ERV1 388 482 -381 1930 115 68 4 chr3 105629005 105629283 -112407875 - AluSc SINE Alu -13 296 1 806 203 156 77 chr3 105629283 105629300 -112407858 + MER21B LTR ERV1 482 496 -367 699 191 32 8 chr3 105629300 105629426 -112407732 + FLAM_A SINE Alu 1 129 -4 806 203 156 77 chr3 105629426 105629629 -112407529 + MER21B LTR ERV1 496 739 -124 1650 165 0 8 chr3 105629821 105630087 -112407071 + MER66B LTR ERV1 1 264 -222 821 172 0 22 chr3 105630091 105630225 -112406933 + FLAM_C SINE Alu 3 133 -10 26 0 0 0 chr3 105630225 105630251 -112406907 + AT_rich Low_complexity Low_complexity 1 26 0 1453 138 17 4 chr3 105630254 105630486 -112406672 + MER66B LTR ERV1 252 486 0 511 156 36 0 chr3 105630516 105630622 -112406536 + LTR27 LTR ERV1 284 366 -270 1803 154 0 11 chr3 105630623 105630902 -112406256 + AluJb SINE Alu 27 302 -10 313 66 0 82 chr3 105630904 105630965 -112406193 + L1PA15 LINE L1 6110 6165 0 4653 108 7 60 chr3 105630965 105631276 -112405882 + L1PA15 LINE L1 5476 5802 -363 1727 193 0 3 chr3 105631276 105631571 -112405587 + AluJb SINE Alu 3 296 -16 4653 108 7 60 chr3 105631571 105631832 -112405326 + L1PA15 LINE L1 5802 6010 -155 2274 118 0 6 chr3 105631832 105632145 -112405013 + AluSx SINE Alu 1 311 -1 4653 108 7 60 chr3 105632145 105632294 -112404864 + L1PA15 LINE L1 6010 6165 0 769 188 0 23 chr3 105632301 105632434 -112404724 + FLAM_C SINE Alu 1 130 -3 584 330 7 10 chr3 105632434 105632728 -112404430 + L1MCa LINE L1 833 1125 -5301 269 103 0 138 chr3 105632755 105632842 -112404316 - AluSc SINE Alu 0 299 225 235 129 32 0 chr3 105632954 105633016 -112404142 + L1 LINE L1 3120 3183 -2963 2270 105 0 3 chr3 105633019 105633313 -112403845 + AluSq SINE Alu 1 293 -20 317 311 0 0 chr3 105633348 105633438 -112403720 - L1MC4 LINE L1 -1339 6703 6614 307 252 0 23 chr3 105633445 105633574 -112403584 - L1MCa LINE L1 -1339 6983 1996 * 308 336 33 0 chr3 105633484 105633606 -112403552 + L1MC4 LINE L1 6614 6739 -1303 2469 75 0 0 chr3 105633648 105633956 -112403202 + AluY SINE Alu 1 308 -3 2534 121 44 12 chr3 105634497 105634910 -112402248 + L1MA4 LINE L1 5592 6017 -283 452 143 105 0 chr3 105634902 105635007 -112402151 + L1MB3 LINE L1 6066 6181 -2 * 964 186 59 0 chr3 105635016 105635220 -112401938 + L1M4 LINE L1 3563 3778 -2368 1802 180 17 0 chr3 105635861 105636155 -112401003 - AluJb SINE Alu -12 300 2 442 202 24 0 chr3 105636182 105636266 -112400892 - L1MC1 LINE L1 -17 6316 6231 780 220 117 79 chr3 105636529 105636622 -112400536 + L1MC4a LINE L1 7374 7462 -346 2129 93 0 24 chr3 105636622 105636967 -112400191 + AluSg SINE Alu 2 339 0 780 220 117 79 chr3 105636967 105637291 -112399867 + L1MC4a LINE L1 7462 7808 0 1775 159 7 7 chr3 105637580 105637882 -112399276 + AluJb SINE Alu 11 312 0 2345 87 0 19 chr3 105638216 105638527 -112398631 + AluY SINE Alu 1 305 -6 2266 108 3 0 chr3 105638641 105638937 -112398221 + AluSx SINE Alu 1 297 -15 2219 122 3 0 chr3 105641190 105641501 -112395657 + AluSx SINE Alu 1 312 0 265 311 20 81 chr3 105641523 105641671 -112395487 - MER5A DNA MER1_type -50 139 1 1424 163 0 0 chr3 105641675 105641896 -112395262 + AluJo SINE Alu 85 305 -7 516 218 52 114 chr3 105641935 105642146 -112395012 - MER112 DNA MER1_type -28 232 35 750 144 27 0 chr3 105642588 105642699 -112394459 + FLAM_C SINE Alu 2 115 -28 1660 180 0 14 chr3 105642814 105643098 -112394060 + AluJo SINE Alu 1 280 -32 307 268 222 20 chr3 105643749 105643902 -112393256 - MIR SINE MIR -77 185 2 2353 96 0 7 chr3 105643951 105644252 -112392906 + AluSx SINE Alu 1 299 -13 2988 201 62 15 chr3 105644379 105645041 -112392117 + L1MC4 LINE L1 6947 7639 -403 21 57 0 0 chr3 105645043 105645078 -112392080 + AT_rich Low_complexity Low_complexity 1 35 0 2250 95 3 3 chr3 105645377 105645672 -112391486 - AluSg SINE Alu -15 295 1 2325 82 14 0 chr3 105646397 105646691 -112390467 - AluSp SINE Alu -15 298 1 471 154 26 13 chr3 105646817 105646895 -112390263 + FRAM/FAM SINE Alu 6 84 -92 829 176 7 28 chr3 105646896 105647038 -112390120 + AluJb SINE Alu 136 274 -38 180 0 0 0 chr3 105647041 105647061 -112390097 + (TC)n Simple_repeat Simple_repeat 2 21 0 243 0 0 0 chr3 105647090 105647117 -112390041 + (CA)n Simple_repeat Simple_repeat 1 27 0 2308 117 0 0 chr3 105647465 105647773 -112389385 - AluSx SINE Alu -4 308 1 1762 141 0 15 chr3 105648639 105648909 -112388249 - AluSg SINE Alu -12 298 33 1298 122 11 5 chr3 105648909 105649098 -112388060 + AluSg/x SINE Alu 112 301 -9 665 195 0 16 chr3 105649230 105649353 -112387805 + FLAM_C SINE Alu 4 124 -9 1769 142 3 54 chr3 105649702 105649998 -112387160 + AluSx SINE Alu 1 281 -31 530 113 0 0 chr3 105650143 105650214 -112386944 - AluS SINE Alu -238 72 2 1129 191 54 0 chr3 105650215 105650419 -112386739 - Tigger3(Golem) DNA MER2_type -2814 215 1 1324 241 57 88 chr3 105650420 105650634 -112386524 + L1M3b LINE L1 1265 1484 -4898 2365 84 0 3 chr3 105650634 105650931 -112386227 + AluY SINE Alu 3 298 -13 1324 241 57 88 chr3 105650931 105651547 -112385611 + L1M3b LINE L1 1484 2117 -4265 2069 138 0 0 chr3 105651547 105651876 -112385282 + AluSx SINE Alu 1 329 0 1324 241 57 88 chr3 105651876 105652216 -112384942 + L1M3b LINE L1 2117 2384 -3998 2164 111 20 3 chr3 105652216 105652513 -112384645 + AluSq SINE Alu 1 302 -11 1324 241 57 88 chr3 105652513 105652833 -112384325 + L1M3b LINE L1 2384 2712 -3670 2489 189 29 6 chr3 105652834 105653320 -112383838 + L1P LINE L1 6 502 -5644 7059 50 14 1 chr3 105653321 105654165 -112382993 + L1PA6 LINE L1 5295 6149 -5 226 276 0 20 chr3 105654177 105654275 -112382883 + L1M3b LINE L1 2700 2795 -3587 669 109 11 0 chr3 105654275 105654367 -112382791 - AluSg/x SINE Alu -10 302 210 426 98 0 0 chr3 105654468 105654529 -112382629 + AluSp/q SINE Alu 243 303 -10 2125 121 0 13 chr3 105654533 105654864 -112382294 + AluSx SINE Alu 1 312 0 231 240 67 0 chr3 105655441 105655516 -112381642 - MER116 DNA Mariner 0 80 1 813 175 7 22 chr3 105655845 105655982 -112381176 - AluJo SINE Alu -176 136 2 201 175 0 25 chr3 105657012 105657052 -112380106 - L3 LINE CR1 -7 1570 1532 2148 114 7 3 chr3 105658443 105658742 -112378416 + AluSx SINE Alu 1 300 -12 1164 53 0 0 chr3 105659142 105659275 -112377883 + AluSc SINE Alu 1 133 -176 30 0 0 0 chr3 105659821 105659851 -112377307 + AT_rich Low_complexity Low_complexity 1 30 0 1308 87 26 41 chr3 105659851 105660046 -112377112 + AluSc SINE Alu 118 309 0 473 286 56 11 chr3 105662902 105663080 -112374078 + MIR SINE MIR 7 192 -70 243 0 0 0 chr3 105663127 105663154 -112374004 + (TG)n Simple_repeat Simple_repeat 2 28 0 2098 92 7 7 chr3 105663595 105663876 -112373282 - AluSg SINE Alu -29 281 1 303 143 143 0 chr3 105664058 105664114 -112373044 + L2 LINE L2 3155 3218 -54 413 185 11 22 chr3 105664209 105664301 -112372857 - MER39 LTR ERV1 0 707 617 * 752 183 114 20 chr3 105664273 105664522 -112372636 - LTR48 LTR ERV1 -58 729 310 1003 153 6 0 chr3 105664525 105664682 -112372476 + AluJb SINE Alu 137 294 -18 449 127 56 0 chr3 105664682 105664753 -112372405 - LTR48B LTR ERV1 -325 319 245 964 194 6 0 chr3 105664753 105664923 -112372235 - FAM SINE Alu -14 171 1 1443 133 24 28 chr3 105664923 105665172 -112371986 - LTR48B LTR ERV1 -387 257 10 562 273 25 19 chr3 105665527 105665688 -112371470 - MIR SINE MIR -1 261 100 22 0 0 0 chr3 105665727 105665749 -112371409 + AT_rich Low_complexity Low_complexity 1 22 0 989 149 25 0 chr3 105665801 105665962 -112371196 - FRAM SINE Alu 0 176 12 207 327 0 0 chr3 105665962 105666017 -112371141 + L2 LINE L2 1237 1291 -2023 * 1058 156 28 11 chr3 105666014 105666194 -112370964 - MER5A DNA MER1_type -6 183 1 * 2650 228 232 49 chr3 105666194 105666625 -112370533 + L2 LINE L2 1290 1634 -1680 1706 182 31 0 chr3 105666625 105666916 -112370242 - AluJb SINE Alu -12 300 1 1640 123 0 25 chr3 105666923 105667167 -112369991 - AluSg/x SINE Alu -7 305 68 2650 228 232 49 chr3 105667167 105667193 -112369965 + L2 LINE L2 1638 1658 -1656 2370 84 10 10 chr3 105667193 105667501 -112369657 - AluSp SINE Alu -5 308 1 2650 228 232 49 chr3 105667501 105668224 -112368934 + L2 LINE L2 1658 2704 -610 505 260 167 11 chr3 105668507 105668740 -112368418 + L2 LINE L2 2769 3037 -276 827 197 0 0 chr3 105668892 105669039 -112368119 + FRAM SINE Alu 26 172 -4 1753 159 0 14 chr3 105669123 105669418 -112367740 - AluJb SINE Alu -16 296 6 2091 176 64 42 chr3 105669494 105669949 -112367209 - MER21A LTR ERV1 -8 923 459 29 0 0 0 chr3 105671071 105671100 -112366058 + AT_rich Low_complexity Low_complexity 1 29 0 2270 97 7 7 chr3 105671708 105672007 -112365151 + AluSx SINE Alu 3 301 -11 1645 115 14 144 chr3 105672806 105673154 -112364004 + AluSp SINE Alu 1 303 0 319 237 59 89 chr3 105673398 105673533 -112363625 + L2 LINE L2 3168 3298 -15 195 42 0 0 chr3 105673565 105673589 -112363569 + (A)n Simple_repeat Simple_repeat 1 24 0 2276 41 28 10 chr3 105673601 105673892 -112363266 - AluY SINE Alu -15 296 1 2528 68 0 6 chr3 105674618 105674929 -112362229 + AluSx SINE Alu 1 309 -3 214 338 53 38 chr3 105675016 105675149 -112362009 + L2 LINE L2 3125 3259 -13 3514 148 11 3 chr3 105675253 105675827 -112361331 + L1MB4 LINE L1 5601 6178 -2 317 274 83 32 chr3 105675992 105676149 -112361009 - L1M4 LINE L1 -2039 4107 3943 2519 43 3 0 chr3 105676291 105676591 -112360567 - AluY SINE Alu -10 301 1 812 160 15 0 chr3 105676670 105676801 -112360357 + AluJb SINE Alu 1 133 -179 307 284 106 69 chr3 105676839 105677159 -112359999 + Charlie8 DNA MER1_type 88 419 -1998 335 330 10 0 chr3 105677165 105677268 -112359890 + L2 LINE L2 3210 3313 0 946 307 182 40 chr3 105677279 105678391 -112358767 - L2 LINE L2 -705 2609 1340 824 91 0 0 chr3 105678453 105678563 -112358595 + MER83 LTR ERV1 1 110 -338 * 1209 165 86 134 chr3 105678562 105678872 -112358286 + MER83 LTR ERV1 50 336 -112 2260 105 10 0 chr3 105678872 105679177 -112357981 - AluSc SINE Alu -1 308 1 1209 165 86 134 chr3 105679177 105679285 -112357873 + MER83 LTR ERV1 336 448 0 777 85 78 16 chr3 105679292 105679421 -112357737 + L1MB2 LINE L1 5999 6135 -36 295 296 52 17 chr3 105679425 105679540 -112357618 - L2 LINE L2 -2016 1298 1180 2261 183 68 68 chr3 105679629 105679848 -112357310 - MER34C LTR ERV1 0 585 367 234 0 0 0 chr3 105679848 105679874 -112357284 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2261 183 68 68 chr3 105679874 105680002 -112357156 - MER34C LTR ERV1 -218 367 240 1676 144 58 48 chr3 105680002 105680294 -112356864 + AluSx SINE Alu 1 295 -17 2261 183 68 68 chr3 105680294 105680530 -112356628 - MER34C LTR ERV1 -344 241 1 520 199 9 94 chr3 105680568 105680731 -112356427 + MER34B LTR ERV1 1 164 -378 1144 147 91 0 chr3 105680748 105680979 -112356179 + LTR26B LTR ERV1 1 281 -341 800 187 0 15 chr3 105680979 105681113 -112356045 + FLAM_C SINE Alu 1 132 -1 1366 168 30 15 chr3 105681146 105681408 -112355750 - MER50 LTR ERV1 0 734 469 2250 120 54 14 chr3 105681410 105681760 -112355398 - THE1B LTR MaLR 0 364 1 12173 87 3 3 chr3 105681760 105683340 -112353818 - THE1B-int LTR MaLR 0 1580 1 884 142 0 0 chr3 105683344 105683471 -112353687 - THE1B LTR MaLR -4 360 234 189 0 0 0 chr3 105683479 105683500 -112353658 + (T)n Simple_repeat Simple_repeat 1 21 0 1558 127 4 18 chr3 105683528 105683757 -112353401 - AluSx SINE Alu -14 298 73 8158 78 8 170 chr3 105683763 105685359 -112351799 - SVA Other Other 0 1386 51 267 31 0 0 chr3 105685361 105685393 -112351765 + (AGGGGG)n Simple_repeat Simple_repeat 3 34 0 252 114 0 0 chr3 105685396 105685431 -112351727 - AluSx SINE Alu -217 85 51 1240 169 31 22 chr3 105685433 105685658 -112351500 - THE1B LTR MaLR -137 227 1 843 247 93 56 chr3 105685673 105685910 -112351248 - MER50 LTR ERV1 -298 436 209 1859 179 0 3 chr3 105685910 105686212 -112350946 - AluSx SINE Alu -9 303 3 1915 151 3 35 chr3 105686214 105686531 -112350627 - AluSx SINE Alu -5 307 1 843 247 93 56 chr3 105686531 105686699 -112350459 - MER50 LTR ERV1 -525 209 13 822 166 7 21 chr3 105686699 105686844 -112350314 + AluJb SINE Alu 157 299 -13 643 77 66 0 chr3 105686845 105686936 -112350222 + LTR26B LTR ERV1 195 291 -240 254 233 0 0 chr3 105686935 105686978 -112350180 + AluJb SINE Alu 200 242 -60 * 1486 187 4 0 chr3 105687020 105687271 -112349887 + LTR26B LTR ERV1 280 531 0 604 185 27 79 chr3 105687271 105687462 -112349696 + MER34B LTR ERV1 167 360 -205 1143 159 0 0 chr3 105687466 105687629 -112349529 + FRAM SINE Alu 1 155 -21 760 172 17 35 chr3 105687658 105687832 -112349326 + MER34 LTR ERV1 371 541 -1 342 304 82 38 chr3 105687839 105688132 -112349026 - L2 LINE L2 -2294 1020 715 1941 228 74 84 chr3 105688263 105688964 -112348194 - LTR8A LTR ERV1 0 727 34 3917 163 22 39 chr3 105689092 105689485 -112347673 + MER6 DNA MER2_type 124 522 -343 3721 139 34 22 chr3 105689485 105689518 -112347640 + MER41B LTR ERV1 1 32 -603 2387 89 0 10 chr3 105689518 105689821 -112347337 - AluSp SINE Alu -13 300 1 3721 139 34 22 chr3 105689821 105690414 -112346744 + MER41B LTR ERV1 32 634 -1 3917 163 22 39 chr3 105690414 105690743 -112346415 + MER6 DNA MER2_type 522 836 -29 2014 159 24 70 chr3 105690743 105690880 -112346278 + LTR23 LTR ERV1 1 143 -294 2166 112 7 7 chr3 105690880 105691184 -112345974 - AluSg SINE Alu -6 304 1 2014 159 24 70 chr3 105691184 105691504 -112345654 + LTR23 LTR ERV1 143 437 0 3917 163 22 39 chr3 105691504 105691534 -112345624 + MER6 DNA MER2_type 836 865 0 749 78 0 29 chr3 105691686 105691789 -112345369 + FLAM_C SINE Alu 29 128 -15 2274 199 60 26 chr3 105691789 105692327 -112344831 - MER67C LTR ERV1 -31 679 124 2159 134 0 0 chr3 105692399 105692705 -112344453 - AluSx SINE Alu -6 306 1 1566 158 32 13 chr3 105692706 105693016 -112344142 + LTR23 LTR ERV1 122 437 0 2285 106 6 6 chr3 105693225 105693537 -112343621 - AluSp SINE Alu -1 312 1 2887 105 40 104 chr3 105693554 105694141 -112343017 + MER4B LTR ERV1 1 624 -155 1710 186 3 10 chr3 105694141 105694442 -112342716 - AluJo SINE Alu -13 299 1 2887 105 40 104 chr3 105694442 105694500 -112342658 + MER4B LTR ERV1 624 684 -95 2353 105 3 0 chr3 105694500 105694804 -112342354 - AluSx SINE Alu -7 305 1 2887 105 40 104 chr3 105694804 105694826 -112342332 + MER4B LTR ERV1 684 779 0 563 177 0 0 chr3 105694830 105694926 -112342232 + MER31A LTR ERV1 1 96 -389 34599 67 7 1 chr3 105694941 105699333 -112337825 + L1P LINE L1 11 4430 -1716 2096 92 33 0 chr3 105699333 105699606 -112337552 - AluSc SINE Alu -27 282 1 12537 129 3 22 chr3 105699607 105700521 -112336637 + MER84-int LTR ERV1 1834 2700 -2254 1964 120 3 11 chr3 105700521 105700858 -112336300 + AluSx SINE Alu 1 335 0 12537 129 3 22 chr3 105700858 105701830 -112335328 + MER84-int LTR ERV1 2700 3688 -1266 9049 117 3 16 chr3 105701873 105703168 -112333990 + MER84-int LTR ERV1 3676 4953 -1 3324 105 51 10 chr3 105703168 105703655 -112333503 + MER84 LTR ERV1 1 507 0 1541 174 68 0 chr3 105703655 105703965 -112333193 + MER31A LTR ERV1 155 485 0 2270 198 52 101 chr3 105703979 105704713 -112332445 - LTR34 LTR ERV1 0 699 2 1527 127 198 8 chr3 105704729 105704982 -112332176 - AluSg1 SINE Alu -6 303 3 964 209 0 11 chr3 105705002 105705193 -112331965 + MER5A DNA MER1_type 1 189 0 3617 163 65 40 chr3 105705271 105706031 -112331127 + LTR19C LTR ERV1 1 779 0 2267 136 32 14 chr3 105706531 105706964 -112330194 - MER31A LTR ERV1 -7 459 5 296 170 0 19 chr3 105706961 105707014 -112330144 - MLT1A1 LTR MaLR -17 348 297 * 2278 118 0 0 chr3 105707014 105707318 -112329840 + AluSg SINE Alu 1 304 -6 1232 101 0 0 chr3 105707318 105707477 -112329681 + AluSg/x SINE Alu 132 290 -20 2107 101 20 3 chr3 105707485 105707782 -112329376 + AluY SINE Alu 1 302 -9 2910 107 53 65 chr3 105707783 105708112 -112329046 + Tigger3b DNA MER2_type 203 534 -2494 2033 141 0 10 chr3 105708112 105708416 -112328742 - AluSg SINE Alu -9 301 1 2165 114 0 3 chr3 105708425 105708722 -112328436 - AluSc SINE Alu -13 296 1 2910 107 53 65 chr3 105708722 105708853 -112328305 + Tigger3b DNA MER2_type 542 667 -2361 2091 109 0 13 chr3 105708853 105709157 -112328001 - AluY SINE Alu -11 300 1 2910 107 53 65 chr3 105709157 105709283 -112327875 + Tigger3b DNA MER2_type 667 793 -438 736 179 0 0 chr3 105709283 105709400 -112327758 + FLAM_C SINE Alu 2 118 -25 252 0 0 0 chr3 105709409 105709437 -112327721 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr3 105709448 105709470 -112327688 + AT_rich Low_complexity Low_complexity 1 22 0 2191 251 129 89 chr3 105709472 105709902 -112327256 - L1M4b LINE L1 -5453 1406 994 2271 84 3 0 chr3 105709902 105710217 -112326941 - AluSp SINE Alu 0 316 1 1988 131 21 0 chr3 105710219 105710510 -112326648 - AluSx SINE Alu -15 297 1 2191 251 129 89 chr3 105710510 105711093 -112326065 - L1M4b LINE L1 -5865 994 349 243 139 0 0 chr3 105711094 105711130 -112326028 + Alu SINE Alu 2 37 -264 1733 117 9 0 chr3 105711130 105711361 -112325797 - AluSx SINE Alu -17 295 63 4100 55 4 0 chr3 105711361 105711849 -112325309 - LTR2B LTR ERV1 0 490 1 490 65 0 0 chr3 105711862 105711924 -112325234 - AluSx SINE Alu -256 62 1 208 0 62 0 chr3 105711960 105711992 -112325166 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1689 158 0 4 chr3 105711998 105712257 -112324901 - AluSx SINE Alu -54 258 1 1659 165 47 10 chr3 105712367 105712664 -112324494 - AluSx SINE Alu -4 308 1 359 87 0 0 chr3 105712688 105712781 -112324377 + FLAM_A SINE Alu 68 160 0 963 259 58 31 chr3 105712795 105713120 -112324038 - L1M4b LINE L1 -6515 344 11 1323 137 156 85 chr3 105713138 105713155 -112324003 + L1MA9 LINE L1 5567 5581 -731 2334 89 10 0 chr3 105713155 105713458 -112323700 + AluSx SINE Alu 1 306 -6 1323 137 156 85 chr3 105713458 105713812 -112323346 + L1MA9 LINE L1 5581 5967 -345 428 97 56 0 chr3 105713812 105713884 -112323274 + Alu SINE Alu 2 77 -233 2071 144 3 0 chr3 105714035 105714334 -112322824 - AluSq SINE Alu -13 300 1 2767 196 28 33 chr3 105714334 105714893 -112322265 - L1 LINE L1 -3388 4177 3617 2002 147 150 5 chr3 105714893 105715267 -112321891 - MSTA LTR MaLR 0 428 1 2767 196 28 33 chr3 105715267 105715280 -112321878 - L1 LINE L1 -3948 3617 3605 1978 131 32 0 chr3 105715280 105715562 -112321596 - AluSx SINE Alu -21 291 1 2767 196 28 33 chr3 105715562 105715742 -112321416 - L1 LINE L1 -3960 3605 3418 1152 157 9 29 chr3 105715743 105715953 -112321205 - AluSg/x SINE Alu -18 294 89 347 143 36 0 chr3 105716067 105716147 -112321011 + AluSp/q SINE Alu 227 308 0 626 155 10 0 chr3 105716186 105716289 -112320869 - U13 snRNA snRNA 0 104 1 948 272 41 0 chr3 105716289 105716605 -112320553 - L1M4 LINE L1 -978 5168 4840 296 263 25 25 chr3 105716701 105716781 -112320377 + L2 LINE L2 3182 3261 -11 33 0 0 0 chr3 105717075 105717108 -112320050 + AT_rich Low_complexity Low_complexity 1 33 0 1729 137 53 14 chr3 105717892 105718177 -112318981 - AluJo SINE Alu -15 297 2 1873 84 4 13 chr3 105718528 105718617 -112318541 + AluSx SINE Alu 46 134 -178 2302 107 0 0 chr3 105718617 105718916 -112318242 + AluY SINE Alu 1 299 -12 1873 84 4 13 chr3 105718916 105719065 -112318093 + AluSx SINE Alu 134 282 -30 575 225 46 0 chr3 105719294 105719445 -112317713 - L1MD3 LINE L1 -8 7987 7830 1773 149 18 0 chr3 105719452 105719728 -112317430 - MER1B DNA MER1_type 0 339 59 4185 171 60 128 chr3 105719756 105720356 -112316802 - L1MC4a LINE L1 -158 7650 7010 1757 177 24 0 chr3 105720356 105720644 -112316514 + AluJb SINE Alu 1 295 -17 4185 171 60 128 chr3 105720644 105720678 -112316480 - L1MC4a LINE L1 -798 7010 6975 198 103 0 0 chr3 105720678 105720707 -112316451 + (CTTA)n Simple_repeat Simple_repeat 1 29 0 341 246 0 0 chr3 105720709 105720770 -112316388 - AluJ/FLAM SINE Alu -240 62 2 4185 171 60 128 chr3 105720770 105721396 -112315762 - L1MC4a LINE L1 -834 6974 6417 1969 151 3 3 chr3 105721574 105721873 -112315285 + AluSx SINE Alu 1 299 -13 1561 199 0 27 chr3 105721888 105722189 -112314969 + AluJo SINE Alu 1 293 -19 269 234 159 7 chr3 105722283 105722428 -112314730 - L1ME4a LINE L1 -101 6020 5854 238 308 0 77 chr3 105722460 105722538 -112314620 - L2 LINE L2 -10 3262 3191 5880 119 53 2 chr3 105722538 105723871 -112313287 - L1PA11 LINE L1 -2 6172 4776 217 326 0 12 chr3 105723942 105724028 -112313130 - L2 LINE L2 -291 2981 2897 25 31 0 0 chr3 105724322 105724354 -112312804 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr3 105724583 105724606 -112312552 + AT_rich Low_complexity Low_complexity 1 23 0 3057 79 19 0 chr3 105725042 105725458 -112311700 - L1PA13 LINE L1 0 6163 5740 1299 198 61 22 chr3 105725458 105725736 -112311422 - AluJo SINE Alu -23 289 1 725 175 217 11 chr3 105725737 105725976 -112311182 - MLT1B LTR MaLR -82 308 2 1364 197 93 7 chr3 105726067 105726336 -112310822 - AluJb SINE Alu -20 292 1 2327 78 3 3 chr3 105726346 105726642 -112310516 - AluSp SINE Alu -17 296 1 910 176 0 0 chr3 105726894 105727042 -112310116 + AluJo SINE Alu 1 148 -164 1618 188 7 0 chr3 105727048 105727325 -112309833 + AluJo SINE Alu 20 298 -14 31 76 0 0 chr3 105727857 105727923 -112309235 + AT_rich Low_complexity Low_complexity 1 66 0 1099 200 38 14 chr3 105727977 105728232 -112308926 - L1ME2 LINE L1 -180 5984 5744 2195 98 3 3 chr3 105728232 105728549 -112308609 - AluSp SINE Alu 0 317 1 1099 200 38 14 chr3 105728549 105728603 -112308555 - L1ME2 LINE L1 -420 5744 5693 * 3608 247 21 18 chr3 105728599 105729610 -112307548 - L1P LINE L1 -3464 2682 1669 2195 96 0 0 chr3 105729618 105729890 -112307268 - AluSc SINE Alu -37 272 1 424 176 34 33 chr3 105729890 105729974 -112307184 + MLT1A1 LTR MaLR 275 350 -15 1469 187 4 0 chr3 105730171 105730422 -112306736 + AluJo SINE Alu 9 260 -52 315 211 44 127 chr3 105730422 105730582 -112306576 - MER41E LTR ERV1 -249 263 126 1484 101 69 5 chr3 105730582 105730800 -112306358 - AluSq SINE Alu -13 300 69 315 211 44 127 chr3 105730800 105730867 -112306291 - MER41E LTR ERV1 -386 126 55 297 170 0 0 chr3 105731006 105731053 -112306105 - MER68 LTR ERV1 -34 528 482 2310 66 0 11 chr3 105731106 105731426 -112305732 - AluSq SINE Alu 0 317 1 2207 191 37 56 chr3 105731431 105731727 -112305431 - MER68 LTR ERV1 -85 477 190 1933 134 0 28 chr3 105731727 105732044 -112305114 - AluSx SINE Alu 0 309 1 2207 191 37 56 chr3 105732044 105732231 -112304927 - MER68 LTR ERV1 -372 190 1 1704 237 150 6 chr3 105732250 105732769 -112304389 + L1MC4 LINE L1 7238 7831 -211 1593 171 93 0 chr3 105732770 105733050 -112304108 + AluJo SINE Alu 1 306 -6 1492 94 0 5 chr3 105733050 105733241 -112303917 + AluSg SINE Alu 1 190 -120 1530 194 10 7 chr3 105733379 105733668 -112303490 + AluJo SINE Alu 14 303 -9 1308 172 182 10 chr3 105733669 105733804 -112303354 + MER31A LTR ERV1 98 208 -277 3160 91 19 60 chr3 105733804 105734267 -112302891 - MLT2A1 LTR ERVL 0 444 1 1308 172 182 10 chr3 105734267 105734439 -112302719 + MER31A LTR ERV1 208 458 -27 2362 167 81 0 chr3 105734439 105734835 -112302323 - MSTA LTR MaLR 0 428 1 10232 160 20 10 chr3 105734835 105735507 -112301651 - MSTA-int LTR MaLR 0 1651 987 1935 157 13 3 chr3 105735507 105735806 -112301352 - AluJb SINE Alu -10 302 1 10232 160 20 10 chr3 105735806 105736769 -112300389 - MSTA-int LTR MaLR -664 987 1 2293 146 63 24 chr3 105736769 105737181 -112299977 - MSTA LTR MaLR 0 428 1 564 340 109 24 chr3 105737255 105737423 -112299735 + L2 LINE L2 2915 3067 -205 2420 110 0 0 chr3 105737423 105737733 -112299425 - AluSq SINE Alu -3 310 1 564 340 109 24 chr3 105737733 105737893 -112299265 + L2 LINE L2 3067 3271 -1 23 0 0 0 chr3 105737911 105737934 -112299224 + AT_rich Low_complexity Low_complexity 1 23 0 1882 113 41 34 chr3 105738255 105738547 -112298611 + AluSx SINE Alu 1 294 -18 713 178 7 22 chr3 105738564 105738699 -112298459 + FLAM_C SINE Alu 1 133 0 3011 168 36 16 chr3 105740098 105740646 -112296512 + MER89 LTR ERV1 1 559 0 1956 125 32 4 chr3 105741108 105741389 -112295769 - AluSx SINE Alu -18 294 6 517 202 0 0 chr3 105741603 105741687 -112295471 - AluJb SINE Alu -30 282 199 1200 169 0 11 chr3 105741733 105741922 -112295236 - AluJo SINE Alu -125 187 1 2294 98 0 3 chr3 105742064 105742360 -112294798 - AluSx SINE Alu -16 296 2 3096 164 106 22 chr3 105742451 105743072 -112294086 + L1MCa LINE L1 20 692 -5734 517 234 87 29 chr3 105743076 105743247 -112293911 + L2 LINE L2 2745 2929 -343 1194 271 143 22 chr3 105743271 105743718 -112293440 + L2 LINE L2 2805 3305 -8 1173 222 99 36 chr3 105744040 105744490 -112292668 - MER34B LTR ERV1 0 565 31 2248 107 7 0 chr3 105744490 105744788 -112292370 + AluSq SINE Alu 1 300 -13 1173 222 99 36 chr3 105744788 105744822 -112292336 - MER34B LTR ERV1 -534 31 1 237 288 14 0 chr3 105744842 105744915 -112292243 - MIR3 SINE MIR -15 193 120 2384 96 0 0 chr3 105745397 105745699 -112291459 + AluSc SINE Alu 1 302 -7 2381 73 0 10 chr3 105745943 105746244 -112290914 + AluY SINE Alu 1 298 -13 205 289 128 48 chr3 105746693 105747029 -112290129 + L2 LINE L2 1563 1925 -1389 225 219 0 0 chr3 105747450 105747491 -112289667 + Alu SINE Alu 210 250 -52 937 212 9 5 chr3 105747491 105747708 -112289450 + AluJo SINE Alu 85 302 -10 1504 125 25 4 chr3 105748506 105748746 -112288412 + L1MB3 LINE L1 5932 6176 -7 251 167 0 0 chr3 105749013 105749055 -112288103 + L1PA15 LINE L1 6001 6042 -123 1934 149 0 26 chr3 105749760 105750069 -112287089 - AluJo SINE Alu -11 301 1 298 361 51 1 chr3 105750346 105750482 -112286676 + MIR SINE MIR 79 219 -43 2215 110 3 0 chr3 105750695 105750994 -112286164 + AluSx SINE Alu 1 300 -12 487 256 185 48 chr3 105751146 105751373 -112285785 - MIR SINE MIR -4 258 1 21 36 0 0 chr3 105751446 105751474 -112285684 + AT_rich Low_complexity Low_complexity 1 28 0 1651 147 23 8 chr3 105751660 105751919 -112285239 - L1PB4 LINE L1 -1 6155 5893 831 126 17 0 chr3 105751924 105752043 -112285115 - AluJb SINE Alu -2 310 190 1218 182 18 18 chr3 105752044 105752264 -112284894 - AluJb SINE Alu -78 234 15 523 198 38 9 chr3 105752270 105752405 -112284753 - L1PB4 LINE L1 -242 5889 5752 2098 114 3 29 chr3 105752540 105752846 -112284312 - AluSq SINE Alu -15 298 1 1903 143 3 10 chr3 105753051 105753351 -112283807 - AluJb SINE Alu -14 298 1 1939 226 120 8 chr3 105753354 105754074 -112283084 - L1ME2 LINE L1 -184 5980 5160 1824 182 0 13 chr3 105754074 105754382 -112282776 - AluJb SINE Alu -8 304 1 1939 226 120 8 chr3 105754382 105754393 -112282765 - L1ME2 LINE L1 -1004 5160 5152 26 30 0 0 chr3 105754761 105754794 -112282364 + GC_rich Low_complexity Low_complexity 1 33 0 237 152 152 0 chr3 105754864 105754910 -112282248 - L1ME2 LINE L1 -1930 4216 4164 11653 167 36 70 chr3 105754922 105756881 -112280277 - L1MA4A LINE L1 -21 7701 5677 793 156 39 0 chr3 105756881 105757009 -112280149 - AluSg/x SINE Alu -14 298 166 11653 167 36 70 chr3 105757009 105757077 -112280081 - L1MA4A LINE L1 -2045 5677 5608 1420 134 93 65 chr3 105757077 105757367 -112279791 - AluJo SINE Alu -14 298 1 11653 167 36 70 chr3 105757367 105758166 -112278992 - L1MA4A LINE L1 -2114 5608 4783 1403 199 17 37 chr3 105758166 105758463 -112278695 - AluJo SINE Alu -21 291 1 11653 167 36 70 chr3 105758463 105758814 -112278344 - L1MA4A LINE L1 -2939 4783 4422 2176 133 0 19 chr3 105758814 105759131 -112278027 - AluSx SINE Alu -1 311 1 11653 167 36 70 chr3 105759131 105759497 -112277661 - L1MA4A LINE L1 -3300 4422 4045 7582 55 4 2 chr3 105759497 105760599 -112276559 + L1PA7 LINE L1 5051 6154 0 11653 167 36 70 chr3 105760599 105760979 -112276179 - L1MA4A LINE L1 -3677 4045 3654 4422 102 24 0 chr3 105760979 105761567 -112275591 - L1PA11 LINE L1 -1 6173 5572 11653 167 36 70 chr3 105761567 105761853 -112275305 - L1MA4A LINE L1 -4068 3654 3523 7525 166 41 7 chr3 105761853 105763942 -112273216 + L1PA13 LINE L1 3985 6159 -4 11653 167 36 70 chr3 105763942 105764037 -112273121 - L1MA4A LINE L1 -4199 3523 3426 13399 57 5 2 chr3 105764044 105766436 -112270722 - L1PA6 LINE L1 -7 6147 3750 2981 72 0 0 chr3 105766444 105766845 -112270313 - L1PA6 LINE L1 -2978 3168 2768 1099 32 0 0 chr3 105766845 105766970 -112270188 - AluYb8 SINE Alu -5 313 189 456 263 84 67 chr3 105767078 105767257 -112269901 - L1 LINE L1 -1141 5005 4824 336 218 15 143 chr3 105767278 105767411 -112269747 + L2 LINE L2 3187 3302 -11 33 0 0 0 chr3 105767705 105767738 -112269420 + AT_rich Low_complexity Low_complexity 1 33 0 1717 137 53 14 chr3 105768514 105768799 -112268359 - AluJo SINE Alu -15 297 2 1854 80 4 13 chr3 105769150 105769239 -112267919 + AluSx SINE Alu 46 134 -178 2392 90 0 0 chr3 105769239 105769538 -112267620 + AluY SINE Alu 1 299 -12 1854 80 4 13 chr3 105769538 105769685 -112267473 + AluSx SINE Alu 134 280 -32 590 225 46 0 chr3 105769916 105770067 -112267091 - L1MD3 LINE L1 -8 7987 7830 1758 149 18 0 chr3 105770074 105770350 -112266808 - MER1B DNA MER1_type 0 339 59 4250 171 60 128 chr3 105770378 105770978 -112266180 - L1MC4a LINE L1 -158 7650 7010 1745 177 24 0 chr3 105770978 105771266 -112265892 + AluJb SINE Alu 1 295 -17 4250 171 60 128 chr3 105771266 105771300 -112265858 - L1MC4a LINE L1 -798 7010 6975 198 103 0 0 chr3 105771300 105771329 -112265829 + (CTTA)n Simple_repeat Simple_repeat 1 29 0 337 246 0 0 chr3 105771331 105771392 -112265766 - AluJ/FLAM SINE Alu -240 62 2 4250 171 60 128 chr3 105771392 105772018 -112265140 - L1MC4a LINE L1 -834 6974 6417 1958 151 3 3 chr3 105772196 105772495 -112264663 + AluSx SINE Alu 1 299 -13 1548 199 0 27 chr3 105772510 105772811 -112264347 + AluJo SINE Alu 1 293 -19 284 234 159 7 chr3 105772905 105773050 -112264108 - L1ME4a LINE L1 -101 6020 5854 260 308 0 77 chr3 105773082 105773160 -112263998 - L2 LINE L2 -10 3262 3191 5904 119 53 2 chr3 105773160 105774493 -112262665 - L1PA11 LINE L1 -2 6172 4776 241 326 0 12 chr3 105774564 105774650 -112262508 - L2 LINE L2 -291 2981 2897 25 31 0 0 chr3 105774944 105774976 -112262182 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr3 105775205 105775228 -112261930 + AT_rich Low_complexity Low_complexity 1 23 0 3202 79 19 0 chr3 105775664 105776080 -112261078 - L1PA13 LINE L1 0 6163 5740 1288 198 61 22 chr3 105776080 105776358 -112260800 - AluJo SINE Alu -23 289 1 718 175 217 11 chr3 105776359 105776598 -112260560 - MLT1B LTR MaLR -82 308 2 1310 196 89 7 chr3 105776689 105776959 -112260199 - AluJb SINE Alu -20 292 1 2305 78 3 3 chr3 105776969 105777265 -112259893 - AluSp SINE Alu -17 296 1 907 176 0 0 chr3 105777517 105777665 -112259493 + AluJo SINE Alu 1 148 -164 1613 188 7 0 chr3 105777671 105777948 -112259210 + AluJo SINE Alu 20 298 -14 31 76 0 0 chr3 105778480 105778546 -112258612 + AT_rich Low_complexity Low_complexity 1 66 0 1124 200 38 14 chr3 105778600 105778855 -112258303 - L1ME2 LINE L1 -180 5984 5744 2172 98 3 3 chr3 105778855 105779172 -112257986 - AluSp SINE Alu 0 317 1 1124 200 38 14 chr3 105779172 105779226 -112257932 - L1ME2 LINE L1 -420 5744 5693 * 3772 203 51 13 chr3 105779222 105780242 -112256916 - L1PA15-16 LINE L1 -3464 3385 2312 1885 124 7 4 chr3 105780242 105780516 -112256642 - AluSx SINE Alu -37 275 1 3772 203 51 13 chr3 105780516 105780659 -112256499 - L1PA15-16 LINE L1 -4537 2312 2176 * 4723 212 13 4 chr3 105780658 105781770 -112255388 + L1P LINE L1 4194 5323 -823 10346 178 161 5 chr3 105781800 105784704 -112252454 - L1PBa LINE L1 -3503 3359 6 3044 214 15 77 chr3 105784715 105785039 -112252119 - L1ME2 LINE L1 -836 5310 4967 2006 131 3 20 chr3 105785039 105785336 -112251822 - AluSx SINE Alu -20 292 1 3044 214 15 77 chr3 105785336 105785437 -112251721 - L1ME2 LINE L1 -1179 4967 4861 4133 115 34 59 chr3 105785437 105786202 -112250956 - L1PA16 LINE L1 -3 6163 5418 3044 214 15 77 chr3 105786202 105786735 -112250423 - L1ME2 LINE L1 -1285 4861 4411 2413 84 0 10 chr3 105786735 105787044 -112250114 - AluY SINE Alu -5 306 1 2252 92 154 13 chr3 105787165 105787554 -112249604 - SVA Other Other -550 836 393 21 36 0 0 chr3 105787605 105787633 -112249525 + GC_rich Low_complexity Low_complexity 1 28 0 314 226 0 0 chr3 105787633 105787695 -112249463 - L1 LINE L1 -2561 3585 3524 3592 207 53 19 chr3 105787849 105788724 -112248434 - L1MB3 LINE L1 -1 6182 5279 1075 138 40 11 chr3 105788726 105788900 -112248258 - AluJb SINE Alu -16 296 118 11049 157 14 15 chr3 105788933 105791986 -112245172 - L1MA1 LINE L1 -6 6296 3184 35975 38 4 1 chr3 105792090 105796992 -112240166 - L1P2 LINE L1 -335 5820 904 1297 91 6 0 chr3 105796989 105797165 -112239993 + L1P2 LINE L1 709 885 -5261 * 3763 203 40 20 chr3 105797164 105798173 -112238985 - L1M4 LINE L1 -766 6442 5414 1538 201 14 3 chr3 105798177 105798470 -112238688 - AluJo SINE Alu -14 298 3 3295 217 58 20 chr3 105798480 105799290 -112237868 - L1M4 LINE L1 -2744 4464 3687 2199 140 112 5 chr3 105799290 105799675 -112237483 - MSTA LTR MaLR 0 428 3 3295 217 58 20 chr3 105799675 105800711 -112236447 - L1M4 LINE L1 -3521 3687 2543 7714 23 4 0 chr3 105800730 105801748 -112235410 - L1PA3 LINE L1 -1 6154 5136 7426 33 8 1 chr3 105801748 105802660 -112234498 + L1PA3 LINE L1 4211 5128 -1018 3209 227 55 97 chr3 105802655 105803042 -112234116 - L1M4 LINE L1 -4657 2552 2150 * 1879 158 3 38 chr3 105803042 105803389 -112233769 + MER1B DNA MER1_type 3 337 0 3209 227 55 97 chr3 105803389 105804446 -112232712 - L1M4 LINE L1 -5059 2150 1154 321 370 87 40 chr3 105804446 105804619 -112232539 - L1M2 LINE L1 -5832 1017 837 914 271 94 19 chr3 105804625 105805039 -112232119 - L1M4 LINE L1 -2136 4010 3566 6502 73 7 69 chr3 105805040 105806408 -112230750 - SVA Other Other -551 1386 433 763 165 0 63 chr3 105806531 105806689 -112230469 - AluJo SINE Alu -164 148 1 933 174 51 15 chr3 105807953 105808149 -112229009 + L1PA16 LINE L1 5948 6150 -16 518 263 37 21 chr3 105808204 105808394 -112228764 + MIR SINE MIR 14 206 -56 1871 132 0 52 chr3 105809391 105809701 -112227457 - AluSx SINE Alu -18 294 1 207 388 8 50 chr3 105809713 105809834 -112227324 + L2 LINE L2 2969 3084 -188 283 371 13 72 chr3 105810078 105810315 -112226843 - L2 LINE L2 -47 3225 3003 29 0 0 0 chr3 105810690 105810719 -112226439 + AT_rich Low_complexity Low_complexity 1 29 0 1153 158 0 50 chr3 105811100 105811218 -112225940 + L1PA14 LINE L1 4121 4224 -1922 188 35 35 0 chr3 105811218 105811247 -112225911 + (TA)n Simple_repeat Simple_repeat 1 30 0 1153 158 0 50 chr3 105811247 105811350 -112225808 + L1PA14 LINE L1 4224 4331 -1815 2094 143 0 0 chr3 105811693 105811994 -112225164 + AluSq SINE Alu 6 306 -7 2191 111 0 0 chr3 105813329 105813618 -112223540 + AluSx SINE Alu 8 296 -16 5256 113 62 3 chr3 105814574 105816360 -112220798 + L1PA14 LINE L1 4316 6158 -3 302 304 0 0 chr3 105816695 105816774 -112220384 - L2 LINE L2 0 3272 3194 189 328 56 72 chr3 105817577 105817702 -112219456 - MIR SINE MIR -138 124 2 627 228 49 90 chr3 105820471 105820817 -112216341 - MLT1J LTR MaLR -180 331 1 1223 21 0 0 chr3 105820931 105821072 -112216086 - L1PA4 LINE L1 -8 6147 6007 893 45 0 0 chr3 105821072 105821182 -112215976 + L1PA4 LINE L1 5859 5968 -187 434 237 130 83 chr3 105821480 105821649 -112215509 - MER5A DNA MER1_type -4 185 9 2545 62 0 0 chr3 105822873 105823180 -112213978 - AluY SINE Alu -4 307 1 946 203 0 0 chr3 105823382 105823545 -112213613 - AluJo SINE Alu -13 299 137 284 51 13 77 chr3 105823596 105823674 -112213484 + (TCC)n Simple_repeat Simple_repeat 3 75 0 6290 118 22 6 chr3 105823708 105824988 -112212170 - L1PB1 LINE L1 0 6151 4854 2402 169 12 49 chr3 105825020 105825587 -112211571 + L1 LINE L1 4291 4836 -1310 228 135 0 0 chr3 105825589 105825626 -112211532 + (T)n Simple_repeat Simple_repeat 1 37 0 730 192 0 0 chr3 105825628 105825758 -112211400 - AluJo SINE Alu -172 130 1 189 116 209 0 chr3 105826374 105826417 -112210741 - L2 LINE L2 0 3313 3262 1817 193 166 32 chr3 105827023 105827652 -112209506 + L1MD3 LINE L1 6846 7389 -606 2192 93 10 7 chr3 105827652 105827942 -112209216 + AluSc SINE Alu 1 291 -18 1817 193 166 32 chr3 105827942 105828180 -112208978 + L1MD3 LINE L1 7389 7976 -19 1857 95 12 0 chr3 105830884 105831136 -112206022 - AluSq SINE Alu -15 298 44 1956 92 11 0 chr3 105831285 105831545 -112205613 - AluSq SINE Alu -14 299 37 772 210 136 3 chr3 105831832 105832467 -112204691 - L1MEc LINE L1 -5314 1082 331 285 266 11 130 chr3 105832700 105832842 -112204316 + L2 LINE L2 3152 3269 -44 2302 92 0 10 chr3 105832842 105833147 -112204011 - AluSc SINE Alu -7 302 1 285 266 11 130 chr3 105833147 105833188 -112203970 + L2 LINE L2 3269 3313 0 771 262 146 50 chr3 105833720 105834098 -112203060 + LTR33A LTR ERVL 108 521 -2 286 264 43 31 chr3 105834475 105834597 -112202561 - MIR SINE MIR -62 146 30 258 429 6 19 chr3 105835703 105835864 -112201294 + L2 LINE L2 2771 2929 -385 451 241 44 36 chr3 105835927 105836064 -112201094 + L2 LINE L2 3159 3296 -17 2112 133 6 18 chr3 105836832 105837171 -112199987 + MER1B DNA MER1_type 3 337 0 1187 191 99 26 chr3 105837485 105837758 -112199400 - AluJo SINE Alu -9 293 1 26 0 0 0 chr3 105838358 105838384 -112198774 + AT_rich Low_complexity Low_complexity 1 26 0 29 28 0 0 chr3 105838527 105838563 -112198595 + AT_rich Low_complexity Low_complexity 1 36 0 198 0 0 0 chr3 105839444 105839466 -112197692 + (TTA)n Simple_repeat Simple_repeat 2 23 0 422 144 10 96 chr3 105839501 105839544 -112197614 - L1MA8 LINE L1 -10 6281 6236 1482 194 42 10 chr3 105839544 105839833 -112197325 - AluJo SINE Alu -14 298 1 422 144 10 96 chr3 105839833 105839893 -112197265 - L1MA8 LINE L1 -55 6236 6187 1955 125 6 52 chr3 105841048 105841375 -112195783 - AluSx SINE Alu 0 312 1 422 280 49 0 chr3 105841751 105841894 -112195264 - MER103 DNA DNA -2 164 15 2629 80 19 19 chr3 105843429 105843804 -112193354 - THE1C LTR MaLR 0 375 1 490 274 111 38 chr3 105843863 105844312 -112192846 + L1MEc LINE L1 876 1357 -5039 345 132 88 11 chr3 105844765 105844856 -112192302 + L1MB7 LINE L1 6087 6184 0 29 28 0 0 chr3 105845303 105845339 -112191819 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr3 105845555 105845577 -112191581 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 105845987 105846008 -112191150 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 105846444 105846465 -112190693 + AT_rich Low_complexity Low_complexity 1 21 0 339 25 0 0 chr3 105847082 105847122 -112190036 + (TG)n Simple_repeat Simple_repeat 2 41 0 319 314 157 0 chr3 105847956 105848096 -112189062 + L2 LINE L2 3111 3272 0 369 289 93 52 chr3 105849084 105849278 -112187880 - MIR SINE MIR -51 211 10 389 198 73 113 chr3 105849949 105850126 -112187032 - MIR SINE MIR -4 258 89 23 78 0 0 chr3 105851960 105852011 -112185147 + AT_rich Low_complexity Low_complexity 1 51 0 266 102 61 0 chr3 105852357 105852406 -112184752 - L2 LINE L2 0 3313 3262 1111 133 0 0 chr3 105852831 105853030 -112184128 - AluSg/x SINE Alu 0 327 129 2668 225 71 28 chr3 105853757 105855304 -112181854 - L1ME1 LINE L1 -5 6161 4545 3413 148 16 0 chr3 105855304 105855871 -112181287 - Tigger4(Zombi) DNA MER2_type 0 2731 2156 1548 177 64 0 chr3 105855871 105856153 -112181005 - Tigger4(Zombi) DNA MER2_type -2430 301 2 514 156 0 0 chr3 105856153 105856243 -112180915 - L1ME1 LINE L1 -1602 4544 4455 598 115 0 39 chr3 105856607 105856711 -112180447 + MER53 DNA DNA 2 101 -88 285 333 0 0 chr3 105856752 105856836 -112180322 + MIR SINE MIR 74 157 -105 1097 229 39 7 chr3 105856946 105857256 -112179902 - L1M4 LINE L1 -1688 4458 4139 4691 210 73 19 chr3 105857871 105859792 -112177366 - L1MB8 LINE L1 -1 6988 4940 636 234 73 36 chr3 105859791 105859983 -112177175 - L1MB8 LINE L1 -6657 202 4 * 237 310 49 49 chr3 105860300 105860409 -112176749 - L1MC4 LINE L1 -27 8015 7904 1937 152 16 10 chr3 105860409 105860719 -112176439 - AluJb SINE Alu 0 312 1 237 310 49 49 chr3 105860719 105860793 -112176365 - L1MC4 LINE L1 -137 7905 7832 2552 233 87 20 chr3 105860834 105861308 -112175850 - L1ME2 LINE L1 -13 6151 5710 1864 136 30 83 chr3 105861308 105861704 -112175454 + THE1C LTR MaLR 1 375 0 9805 104 38 32 chr3 105861704 105863276 -112173882 + THE1C-int LTR MaLR 1 1580 0 2132 167 8 13 chr3 105863276 105863653 -112173505 + THE1C LTR MaLR 1 375 0 2552 233 87 20 chr3 105863653 105864326 -112172832 - L1ME2 LINE L1 -453 5711 4921 291 320 21 10 chr3 105864864 105864961 -112172197 - MIR SINE MIR -73 135 38 183 80 0 0 chr3 105865301 105865326 -112171832 + (TATG)n Simple_repeat Simple_repeat 2 26 0 3896 138 35 0 chr3 105865339 105865993 -112171165 - L1MC2 LINE L1 -8 6336 5660 248 330 44 22 chr3 105867662 105867753 -112169405 + L2 LINE L2 3118 3210 -62 23 68 0 0 chr3 105867972 105868016 -112169142 + AT_rich Low_complexity Low_complexity 1 44 0 325 352 92 5 chr3 105868284 105868480 -112168678 - MIR SINE MIR -2 260 48 363 324 131 50 chr3 105868838 105869544 -112167614 - L2 LINE L2 -234 3038 2225 3764 144 2 39 chr3 105869558 105870196 -112166962 + Tigger1 DNA MER2_type 1 614 -1804 26909 133 18 13 chr3 105870196 105871390 -112165768 + L1PA8 LINE L1 2 1188 -5299 180 77 0 0 chr3 105871390 105871416 -112165742 + (CAA)n Simple_repeat Simple_repeat 2 27 0 26909 133 18 13 chr3 105871416 105873798 -112163360 + L1PA8 LINE L1 1188 3556 -2931 2234 56 3 25 chr3 105873798 105874109 -112163049 + AluY SINE Alu 1 305 0 26909 133 18 13 chr3 105874109 105876905 -112160253 + L1PA8 LINE L1 3556 6461 -26 194 33 67 0 chr3 105876915 105876945 -112160213 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 10920 140 28 5 chr3 105876945 105878716 -112158442 + Tigger1 DNA MER2_type 603 2418 0 370 280 61 45 chr3 105878817 105878949 -112158209 - MIR SINE MIR -56 152 19 1800 150 3 32 chr3 105880471 105880785 -112156373 - AluJo SINE Alu -7 305 1 238 283 0 0 chr3 105880879 105880932 -112156226 - MIR3 SINE MIR -19 189 137 342 340 186 17 chr3 105880958 105881432 -112155726 + L2 LINE L2 2330 2883 -431 485 253 130 13 chr3 105881511 105881665 -112155493 - MIR SINE MIR -10 252 81 4808 121 15 3 chr3 105882186 105883738 -112153420 - L1PA16 LINE L1 -10 6156 4517 743 266 16 16 chr3 105884777 105884965 -112152193 - MIR SINE MIR 0 262 75 482 136 0 0 chr3 105885128 105885209 -112151949 + L1PB4 LINE L1 6069 6149 -7 25 31 0 0 chr3 105885209 105885241 -112151917 + AT_rich Low_complexity Low_complexity 1 32 0 304 326 89 22 chr3 105886579 105886714 -112150444 + MIR3 SINE MIR 11 154 -54 1467 257 63 5 chr3 105886731 105887109 -112150049 + L2 LINE L2 2301 2700 -614 21 36 0 0 chr3 105887326 105887354 -112149804 + AT_rich Low_complexity Low_complexity 1 28 0 2126 101 3 24 chr3 105887684 105887982 -112149176 + AluSx SINE Alu 6 297 -15 21 57 0 0 chr3 105888561 105888596 -112148562 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 105888895 105888918 -112148240 + AT_rich Low_complexity Low_complexity 1 23 0 1399 209 134 43 chr3 105888954 105889417 -112147741 - MLT1D LTR MaLR 0 505 1 239 352 24 0 chr3 105889577 105889702 -112147456 + L2 LINE L2 1569 1696 -1618 225 385 0 0 chr3 105889803 105889881 -112147277 + L2 LINE L2 3234 3311 -2 2227 88 7 10 chr3 105890046 105890341 -112146817 - AluSx SINE Alu -18 294 1 344 339 17 20 chr3 105890442 105890627 -112146531 - MIR SINE MIR -46 216 35 759 277 37 12 chr3 105891592 105891834 -112145324 + MIR SINE MIR 15 262 0 319 282 0 0 chr3 105891882 105891953 -112145205 + MIR SINE MIR 83 153 -55 2137 117 0 0 chr3 105892750 105893052 -112144106 - AluSx SINE Alu 0 302 1 276 302 53 47 chr3 105893466 105893635 -112143523 + L2 LINE L2 3111 3280 -33 * 467 273 8 8 chr3 105893634 105893755 -112143403 - L2 LINE L2 0 3313 3193 849 216 70 0 chr3 105893765 105893950 -112143208 + MER3 DNA MER1_type 6 203 -6 24 67 0 0 chr3 105894107 105894152 -112143006 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr3 105894489 105894512 -112142646 + AT_rich Low_complexity Low_complexity 1 23 0 446 191 19 9 chr3 105894676 105894781 -112142377 - L1MC5 LINE L1 -516 7445 7340 383 254 154 0 chr3 105894957 105895067 -112142091 + L2 LINE L2 3180 3306 -7 217 200 123 0 chr3 105896149 105896214 -112140944 + L2 LINE L2 3241 3313 0 2086 120 30 0 chr3 105896789 105897089 -112140069 - AluSx SINE Alu -3 309 1 298 162 27 81 chr3 105897150 105897224 -112139934 + L2 LINE L2 3203 3272 0 384 59 0 0 chr3 105898861 105898912 -112138246 + (TG)n Simple_repeat Simple_repeat 2 52 0 246 299 124 29 chr3 105899094 105899231 -112137927 - MIR3 SINE MIR -46 162 13 538 325 108 21 chr3 105899328 105899568 -112137590 + MIR SINE MIR 2 262 0 1903 46 29 8 chr3 105900203 105900444 -112136714 - AluY SINE Alu -22 289 44 2125 103 3 23 chr3 105900785 105901086 -112136072 + AluSx SINE Alu 18 312 0 487 265 104 35 chr3 105902001 105902231 -112134927 - MIR SINE MIR -14 248 3 501 264 118 17 chr3 105902325 105902369 -112134789 - MIR SINE MIR 0 262 224 186 43 0 0 chr3 105902369 105902392 -112134766 + (TA)n Simple_repeat Simple_repeat 2 24 0 501 264 118 17 chr3 105902392 105902525 -112134633 - MIR SINE MIR -38 224 67 241 282 28 0 chr3 105902710 105902781 -112134377 + MIR SINE MIR 23 95 -167 336 273 156 8 chr3 105902872 105903000 -112134158 + MIR SINE MIR 95 241 -21 21 36 0 0 chr3 105903238 105903266 -112133892 + AT_rich Low_complexity Low_complexity 1 28 0 1180 172 150 17 chr3 105903629 105903919 -112133239 - MER58B DNA MER1_type 0 341 17 13910 176 23 22 chr3 105903919 105904035 -112133123 - L1MA5A LINE L1 -394 6605 6491 2277 158 55 74 chr3 105904035 105904657 -112132501 - LTR38B LTR ERV1 0 610 1 13910 176 23 22 chr3 105904657 105908425 -112128733 - L1MA5A LINE L1 -508 6491 2719 365 169 70 0 chr3 105908401 105908472 -112128686 - L1MA5A LINE L1 -6707 142 67 * 25 0 0 0 chr3 105908903 105908928 -112128230 + AT_rich Low_complexity Low_complexity 1 25 0 338 217 43 0 chr3 105910104 105910173 -112126985 - L2 LINE L2 -1 3271 3200 193 266 25 51 chr3 105911448 105911527 -112125631 - L2 LINE L2 -23 3249 3173 29 47 0 0 chr3 105911607 105911650 -112125508 + AT_rich Low_complexity Low_complexity 1 43 0 473 333 83 25 chr3 105911913 105912153 -112125005 + MIR SINE MIR 7 260 -2 495 264 97 68 chr3 105912389 105912771 -112124387 - LTR37B LTR ERV1 -69 399 7 307 320 194 19 chr3 105913454 105913660 -112123498 + MIR SINE MIR 17 258 -4 333 212 35 35 chr3 105913954 105914039 -112123119 + MLT1K LTR MaLR 496 580 -8 2169 106 31 0 chr3 105914248 105914541 -112122617 + AluSx SINE Alu 1 302 -10 210 204 0 20 chr3 105915229 105915278 -112121880 + (TA)n Simple_repeat Simple_repeat 2 49 0 2449 64 0 3 chr3 105915485 105915797 -112121361 - AluY SINE Alu 0 311 1 195 42 0 0 chr3 105916652 105916676 -112120482 + (CCCCCG)n Simple_repeat Simple_repeat 6 29 0 291 54 0 0 chr3 105916886 105916923 -112120235 + (A)n Simple_repeat Simple_repeat 1 37 0 2530 44 0 3 chr3 105918133 105918429 -112118729 - AluY SINE Alu -16 295 1 17544 117 10 31 chr3 105918435 105921255 -112115903 - L1P LINE L1 -3375 2771 11 4662 248 93 24 chr3 105921262 105922978 -112114180 - L1M2 LINE L1 -4109 3100 1254 540 258 90 70 chr3 105923049 105923147 -112114011 - L1MDa LINE L1 -5078 1462 1367 3427 122 21 19 chr3 105923147 105923673 -112113485 - MER1A DNA MER1_type 0 527 1 540 258 90 70 chr3 105923673 105923847 -112113311 - L1MDa LINE L1 -5173 1367 1198 2102 99 3 7 chr3 105923847 105924178 -112112980 + AluSq SINE Alu 1 330 0 540 258 90 70 chr3 105924178 105924348 -112112810 - L1MDa LINE L1 -5342 1198 1009 269 333 21 0 chr3 105924434 105924527 -112112631 - L1MDa LINE L1 -6445 95 1 * 533 195 62 66 chr3 105924507 105924534 -112112624 - L1M4 LINE L1 -811 5335 5309 492 111 0 0 chr3 105924543 105924624 -112112534 + (TA)n Simple_repeat Simple_repeat 1 81 0 1523 189 62 0 chr3 105924624 105924889 -112112269 - AluJo SINE Alu -27 285 1 533 195 62 66 chr3 105924889 105925087 -112112071 - L1M4 LINE L1 -837 5309 5111 2174 121 0 0 chr3 105925088 105925385 -112111773 - AluSx SINE Alu -13 299 3 2305 96 3 0 chr3 105925402 105925704 -112111454 - AluSp SINE Alu -1 312 10 2907 175 30 89 chr3 105925771 105926567 -112110591 - L1MB5 LINE L1 -9 6165 5417 759 153 7 170 chr3 105926565 105926853 -112110305 - L1MB5 LINE L1 -1478 4668 4428 * 3428 222 36 46 chr3 105926848 105927028 -112110130 - L1M4 LINE L1 -740 5434 5254 798 185 0 0 chr3 105927028 105927158 -112110000 - FLAM_C SINE Alu -3 130 1 3428 222 36 46 chr3 105927158 105928186 -112108972 - L1M4 LINE L1 -920 5254 4244 291 215 32 0 chr3 105928177 105928253 -112108905 - L1M3 LINE L1 -416 5735 5664 * 367 266 18 37 chr3 105928318 105928427 -112108731 - MIR SINE MIR -73 189 83 21 36 0 0 chr3 105928887 105928915 -112108243 + AT_rich Low_complexity Low_complexity 1 28 0 302 345 0 25 chr3 105929065 105929184 -112107974 + MIR3 SINE MIR 87 202 -6 562 135 52 0 chr3 105929347 105929443 -112107715 - HY3 scRNA scRNA 0 101 1 396 0 0 0 chr3 105930987 105931031 -112106127 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 823 152 0 0 chr3 105931046 105931171 -112105987 + AluJb SINE Alu 1 125 -187 27 49 0 0 chr3 105931172 105931213 -112105945 + AT_rich Low_complexity Low_complexity 1 41 0 334 295 101 16 chr3 105932545 105932674 -112104484 - MIR SINE MIR -6 256 117 2794 163 65 88 chr3 105932956 105933432 -112103726 - L1MB8 LINE L1 -9 6169 5683 1964 163 3 0 chr3 105933432 105933739 -112103419 - AluJb SINE Alu 0 312 5 2794 163 65 88 chr3 105933739 105934087 -112103071 - L1MB8 LINE L1 -495 5683 5363 12502 57 5 2 chr3 105934087 105936493 -112100665 - L1PA4 LINE L1 0 6155 3750 19312 111 9 30 chr3 105936501 105936902 -112100256 - L1PA4 LINE L1 -2978 3168 2760 2844 19 0 0 chr3 105936902 105937215 -112099943 - AluYb8 SINE Alu -5 313 1 19312 111 9 30 chr3 105937215 105940041 -112097117 - L1PA4 LINE L1 -3386 2760 11 4241 251 86 15 chr3 105940048 105941757 -112095401 - L1M2 LINE L1 -4109 3100 1260 439 272 43 72 chr3 105941836 105941933 -112095225 - L1MDb LINE L1 -5081 1462 1364 3439 122 21 19 chr3 105941933 105942459 -112094699 - MER1A DNA MER1_type 0 527 1 439 272 43 72 chr3 105942459 105942633 -112094525 - L1MDb LINE L1 -5179 1364 1205 2146 99 3 3 chr3 105942633 105942963 -112094195 + AluSq SINE Alu 1 330 0 439 272 43 72 chr3 105942963 105943134 -112094024 - L1MDb LINE L1 -5338 1205 1031 243 333 21 0 chr3 105943219 105943312 -112093846 - L1MDb LINE L1 -6445 95 1 492 111 0 0 chr3 105943328 105943409 -112093749 + (TA)n Simple_repeat Simple_repeat 1 81 0 1501 196 62 0 chr3 105943409 105943674 -112093484 - AluJo SINE Alu -27 285 1 3294 155 37 18 chr3 105943796 105943913 -112093245 - L1 LINE L1 -3422 4143 4030 252 0 0 0 chr3 105943913 105943941 -112093217 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 3294 155 37 18 chr3 105943941 105944912 -112092246 - L1 LINE L1 -3535 4030 3036 * 5342 186 37 0 chr3 105944911 105945900 -112091258 - L1 LINE L1 -5459 2106 1081 1803 74 0 13 chr3 105946026 105946257 -112090901 - AluSc SINE Alu -22 287 60 22288 77 1 1 chr3 105946257 105950121 -112087037 + L1PA7 LINE L1 2285 6154 0 1439 161 24 20 chr3 105950244 105950308 -112086850 - L1PA13 LINE L1 -2231 4566 4504 1903 162 0 3 chr3 105950308 105950611 -112086547 - AluSx SINE Alu -10 302 1 1439 161 24 20 chr3 105950611 105950838 -112086320 - L1PA13 LINE L1 -2293 4504 4274 11653 193 24 19 chr3 105950838 105951036 -112086122 - L1PA13 LINE L1 -4042 2755 2559 2027 131 0 7 chr3 105951036 105951334 -112085824 + AluSx SINE Alu 1 296 -16 11653 193 24 19 chr3 105951334 105952650 -112084508 - L1PA13 LINE L1 -4238 2559 1235 1666 161 97 32 chr3 105952650 105952992 -112084166 - THE1B LTR MaLR 0 364 1 11653 193 24 19 chr3 105952992 105954228 -112082930 - L1PA13 LINE L1 -5562 1235 6 1415 169 28 36 chr3 105954242 105954598 -112082560 - L1ME LINE L1 -497 5667 5315 349 216 57 0 chr3 105954625 105954713 -112082445 - L1M LINE L1 -760 5406 5314 2257 98 8 64 chr3 105955488 105955845 -112081313 - MER1B DNA MER1_type 0 337 1 1436 228 26 93 chr3 105956591 105957250 -112079908 - L1MC4 LINE L1 -130 7912 7298 2498 48 0 3 chr3 105957439 105957732 -112079426 - AluY SINE Alu -19 292 1 669 263 82 41 chr3 105957788 105958031 -112079127 + MIR SINE MIR 2 254 -8 190 331 63 63 chr3 105958388 105958563 -112078595 + L2 LINE L2 2660 2834 -480 322 306 128 28 chr3 105958756 105958936 -112078222 + L2 LINE L2 3112 3309 -4 24 0 0 0 chr3 105958959 105958983 -112078175 + AT_rich Low_complexity Low_complexity 1 24 0 233 179 54 18 chr3 105959254 105959310 -112077848 - L3 LINE CR1 -355 1222 1165 200 193 53 0 chr3 105960533 105960590 -112076568 + (TATATG)n Simple_repeat Simple_repeat 6 65 0 339 324 98 17 chr3 105961681 105961854 -112075304 + L2 LINE L2 2325 2511 -803 394 410 25 18 chr3 105963672 105963950 -112073208 + L2 LINE L2 2553 2832 -482 292 337 163 24 chr3 105964091 105964337 -112072821 + L2 LINE L2 3033 3312 -1 23 0 0 0 chr3 105965990 105966013 -112071145 + AT_rich Low_complexity Low_complexity 1 23 0 889 269 24 40 chr3 105966585 105966838 -112070320 - MIR SINE MIR -12 250 2 199 274 39 20 chr3 105966852 105966903 -112070255 + MIR3 SINE MIR 105 156 -52 2039 128 7 0 chr3 105966928 105967253 -112069905 - AluSx SINE Alu 0 327 1 12885 189 32 8 chr3 105967253 105971223 -112065935 - L1P5 LINE L1 -366 6501 2133 5131 46 3 0 chr3 105971223 105971849 -112065309 - L1PA5 LINE L1 0 6154 5527 12885 189 32 8 chr3 105971849 105972609 -112064549 - L1P5 LINE L1 -4734 2133 1393 602 219 20 0 chr3 105972648 105972799 -112064359 - L1P5 LINE L1 -6709 154 1 465 207 32 75 chr3 105972802 105972990 -112064168 - MLT1B LTR MaLR -68 322 143 5623 181 3 7 chr3 105973000 105974161 -112062997 - L1P LINE L1 -762 5384 4228 318 312 36 29 chr3 105974323 105974461 -112062697 + MIR3 SINE MIR 58 196 -12 964 155 21 5 chr3 105974517 105974704 -112062454 + Tigger1 DNA MER2_type 2226 2415 -3 7043 120 25 158 chr3 105974771 105975182 -112061976 - Tigger1 DNA MER2_type -845 1573 1109 2144 99 27 3 chr3 105975182 105975476 -112061682 - AluSx SINE Alu -11 301 1 7043 120 25 158 chr3 105975476 105975798 -112061360 - Tigger1 DNA MER2_type -1309 1109 746 1170 167 0 81 chr3 105975798 105976032 -112061126 - AluJb SINE Alu -12 300 86 7043 120 25 158 chr3 105976032 105976259 -112060899 - Tigger1 DNA MER2_type -1672 746 490 2236 128 0 0 chr3 105976259 105976571 -112060587 - AluSx SINE Alu 0 312 1 7043 120 25 158 chr3 105976571 105976696 -112060462 - Tigger1 DNA MER2_type -1928 490 350 1517 181 29 36 chr3 105976696 105977005 -112060153 - AluJo SINE Alu -5 307 1 7043 120 25 158 chr3 105977005 105977495 -112059663 - Tigger1 DNA MER2_type -2068 350 4 1605 180 4 0 chr3 105977892 105978148 -112059010 + AluJo SINE Alu 1 257 -55 23 0 0 0 chr3 105978981 105979004 -112058154 + AT_rich Low_complexity Low_complexity 1 23 0 2257 92 0 10 chr3 105979335 105979640 -112057518 - AluY SINE Alu -9 302 1 218 273 45 34 chr3 105979640 105979717 -112057441 + L2 LINE L2 3230 3310 -3 1715 174 7 4 chr3 105980397 105980672 -112056486 + AluJo SINE Alu 12 287 -25 2258 110 3 0 chr3 105980676 105980975 -112056183 + AluSq SINE Alu 1 300 -13 234 390 76 0 chr3 105980996 105981114 -112056044 + L2 LINE L2 3099 3225 -47 578 310 111 0 chr3 105981711 105981927 -112055231 + MIR SINE MIR 23 262 0 3467 161 27 10 chr3 105982175 105983123 -112054035 + L1MA4A LINE L1 4641 5609 -694 1169 51 0 32 chr3 105983167 105983323 -112053835 + AluY SINE Alu 161 311 0 3464 132 48 11 chr3 105983323 105983952 -112053206 + L1MA4A LINE L1 5605 6256 -47 794 213 36 52 chr3 105983952 105984201 -112052957 + MSTB2 LTR MaLR 213 457 0 11647 179 35 83 chr3 105984201 105984827 -112052331 - L1M2 LINE L1 -743 6105 5451 913 191 12 18 chr3 105984827 105984995 -112052163 - AluJo SINE Alu -20 292 126 11647 179 35 83 chr3 105984995 105987579 -112049579 - L1M2 LINE L1 -1397 5451 2745 2420 108 0 0 chr3 105987579 105987886 -112049272 - AluSx SINE Alu -5 307 1 11647 179 35 83 chr3 105987886 105988562 -112048596 - L1M2 LINE L1 -4103 2745 2038 766 150 0 29 chr3 105988562 105988702 -112048456 + FRAM SINE Alu 1 40 0 11647 179 35 83 chr3 105988702 105990104 -112047054 - L1M2 LINE L1 -4810 2038 812 462 336 21 7 chr3 105990123 105990263 -112046895 - L1M2 LINE L1 -5934 915 774 3507 279 124 15 chr3 105990263 105991758 -112045400 - L1M2b LINE L1 -5551 1658 1 1809 292 26 44 chr3 105991788 105992554 -112044604 - L1M3b LINE L1 -4929 1352 601 183 80 0 0 chr3 105992673 105992698 -112044460 + (CA)n Simple_repeat Simple_repeat 2 26 0 804 154 58 6 chr3 105992853 105993009 -112044149 - MSTB LTR MaLR 0 428 265 6185 180 119 30 chr3 105993010 105994549 -112042609 - MER52A LTR ERV1 0 1755 1 1046 167 107 13 chr3 105994552 105994785 -112042373 - MSTB LTR MaLR -164 262 8 1707 191 0 23 chr3 105995358 105995667 -112041491 + AluJo SINE Alu 5 306 -6 278 229 0 104 chr3 105996462 105996558 -112040600 - MIR SINE MIR -75 187 102 381 263 78 85 chr3 105996654 105997053 -112040105 - L1ME3A LINE L1 -111 6059 5664 868 158 105 0 chr3 105997185 105997337 -112039821 - FAM SINE Alu -4 171 4 27 29 0 0 chr3 105997441 105997475 -112039683 + AT_rich Low_complexity Low_complexity 1 34 0 4391 169 55 6 chr3 105997551 105998895 -112038263 - L1MB3 LINE L1 -77 6106 4699 5978 166 58 77 chr3 105998905 105999803 -112037355 - L1MCa LINE L1 -4809 1617 762 861 101 78 0 chr3 105999803 105999932 -112037226 - MER85 DNA T2_type 0 139 1 5978 166 58 77 chr3 105999932 106000654 -112036504 - L1MCa LINE L1 -5664 762 28 2189 23 8 0 chr3 106001043 106001302 -112035856 - L1PA4 LINE L1 -2 6153 5893 1857 142 6 15 chr3 106001456 106001793 -112035365 - L1MB3 LINE L1 -8 6175 5842 3441 171 42 47 chr3 106001793 106002265 -112034893 - L1MB4 LINE L1 -94 6086 5613 2505 74 3 0 chr3 106002265 106002575 -112034583 - AluSp SINE Alu -2 311 1 3441 171 42 47 chr3 106002575 106003039 -112034119 - L1MB4 LINE L1 -567 5613 5160 1428 183 19 68 chr3 106003039 106003362 -112033796 - AluJo SINE Alu -5 307 1 3441 171 42 47 chr3 106003362 106003763 -112033395 - L1MB4 LINE L1 -1020 5160 4759 234 194 75 0 chr3 106004011 106004078 -112033080 - L1MB4 LINE L1 -1490 4656 4585 314 144 103 62 chr3 106004867 106004964 -112032194 - L1MC5 LINE L1 -32 7929 7829 36 53 0 0 chr3 106005860 106005917 -112031241 + AT_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chr3 106006034 106006056 -112031102 + AT_rich Low_complexity Low_complexity 1 22 0 1792 154 6 47 chr3 106006509 106006828 -112030330 - AluJb SINE Alu -6 306 1 1099 191 174 3 chr3 106007151 106007445 -112029713 - MER2 DNA MER2_type 0 344 1 3085 48 2 18 chr3 106009091 106009487 -112027671 - L1PA5 LINE L1 0 6154 5765 23 68 0 0 chr3 106010655 106010699 -112026459 + AT_rich Low_complexity Low_complexity 1 44 0 889 118 15 0 chr3 106012170 106012306 -112024852 - AluSg/x SINE Alu -4 306 169 312 188 0 0 chr3 106013950 106014014 -112023144 + (TG)n Simple_repeat Simple_repeat 1 64 0 1138 72 12 6 chr3 106014106 106014272 -112022886 + (TTTC)n Simple_repeat Simple_repeat 2 168 0 1851 101 114 135 chr3 106015166 106015603 -112021555 - MSTA LTR MaLR 0 428 1 205 314 14 14 chr3 106015975 106016045 -112021113 + L2 LINE L2 3201 3270 -2 23 33 0 0 chr3 106016209 106016239 -112020919 + AT_rich Low_complexity Low_complexity 1 30 0 198 103 0 0 chr3 106017697 106017726 -112019432 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 195 345 100 45 chr3 106017731 106017841 -112019317 - L2 LINE L2 -30 3242 3127 478 231 15 15 chr3 106018076 106018210 -112018948 + Charlie8 DNA MER1_type 96 229 -2188 25 0 0 0 chr3 106018514 106018539 -112018619 + AT_rich Low_complexity Low_complexity 1 25 0 293 299 91 46 chr3 106019685 106019882 -112017276 + MIR3 SINE MIR 1 206 -2 1072 165 0 69 chr3 106020244 106020462 -112016696 - AluJo SINE Alu -23 289 87 750 286 113 23 chr3 106021103 106021501 -112015657 - LTR33 LTR ERVL -85 436 3 2275 105 73 14 chr3 106021860 106022204 -112014954 - THE1B LTR MaLR 0 364 1 436 314 0 8 chr3 106022589 106022707 -112014451 + MER5B DNA MER1_type 37 153 -25 2324 97 3 0 chr3 106022713 106023012 -112014146 - AluSp SINE Alu -13 300 1 1569 179 31 10 chr3 106023216 106023506 -112013652 - AluJo SINE Alu -16 296 1 754 311 44 74 chr3 106027969 106028279 -112008879 + L2 LINE L2 2175 2464 -850 2333 102 0 3 chr3 106028279 106028582 -112008576 - AluSq SINE Alu -11 302 1 754 311 44 74 chr3 106028582 106028811 -112008347 + L2 LINE L2 2464 2698 -616 612 327 120 32 chr3 106028833 106029301 -112007857 + L2 LINE L2 2804 3312 -1 351 323 38 35 chr3 106029656 106029828 -112007330 + MIR SINE MIR 39 212 -50 1807 193 3 6 chr3 106029909 106030220 -112006938 + AluJo SINE Alu 1 310 -2 6666 66 3 0 chr3 106030249 106031285 -112005873 - L1PA7 LINE L1 -2 6152 5099 9844 99 4 25 chr3 106031289 106033928 -112003230 - L1P3 LINE L1 -3840 2621 1 1092 196 33 0 chr3 106034920 106035134 -112002024 + Tigger4(Zombi) DNA MER2_type 3 223 -2508 1995 106 13 0 chr3 106035137 106035440 -112001718 + Tigger4(Zombi) DNA MER2_type 2424 2730 -1 1852 197 42 18 chr3 106035810 106036261 -112000897 - MLT1C LTR MaLR 0 467 6 2440 99 0 0 chr3 106037790 106038103 -111999055 + AluSq SINE Alu 1 313 0 461 273 68 37 chr3 106038791 106038952 -111998206 + MIR3 SINE MIR 20 185 -23 228 283 0 101 chr3 106039419 106039518 -111997640 - L2 LINE L2 -17 3296 3208 268 339 109 12 chr3 106040141 106040306 -111996852 + L2 LINE L2 3082 3262 -10 276 330 155 16 chr3 106041644 106041838 -111995320 - MIR SINE MIR -2 260 40 21 36 0 0 chr3 106044377 106044405 -111992753 + AT_rich Low_complexity Low_complexity 1 28 0 261 83 0 0 chr3 106044844 106044880 -111992278 + (TG)n Simple_repeat Simple_repeat 1 36 0 2124 107 0 21 chr3 106046126 106046417 -111990741 - AluSx SINE Alu -27 285 1 768 169 133 0 chr3 106049745 106049940 -111987218 - L1MD3 LINE L1 -19 7976 7756 234 171 0 0 chr3 106049941 106049982 -111987176 - L1MC4a LINE L1 -285 7523 7483 2215 93 14 0 chr3 106049983 106050273 -111986885 - AluSx SINE Alu -18 294 1 1658 69 0 0 chr3 106052209 106052426 -111984732 + L1PA5 LINE L1 5938 6154 0 2661 206 17 49 chr3 106054192 106054846 -111982312 - LTR27 LTR ERV1 -2 634 2 1879 164 0 13 chr3 106055113 106055418 -111981740 - AluJb SINE Alu -11 301 1 1768 164 133 16 chr3 106058881 106059264 -111977894 - MSTA LTR MaLR 0 428 1 8490 175 8 59 chr3 106059264 106061003 -111976155 - MSTA-int LTR MaLR 0 1651 2 1806 164 132 11 chr3 106061007 106061385 -111975773 - MSTA LTR MaLR -4 424 1 336 259 116 20 chr3 106061947 106062094 -111975064 - L1ME4a LINE L1 -11 6110 5950 416 285 24 0 chr3 106062195 106062318 -111974840 + Charlie8 DNA MER1_type 1 126 -2291 1806 132 40 36 chr3 106062846 106063150 -111974008 - AluJb SINE Alu -7 305 1 748 152 0 8 chr3 106063678 106063803 -111973355 - Tigger3(Golem) DNA MER2_type -1 3028 2905 1362 104 0 5 chr3 106063851 106064052 -111973106 + L1PB1 LINE L1 5951 6150 -1 198 0 0 0 chr3 106065608 106065630 -111971528 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 208 274 36 48 chr3 106065836 106065920 -111971238 - L2 LINE L2 -45 3268 3186 248 360 56 0 chr3 106066065 106066154 -111971004 + MIR SINE MIR 58 151 -57 1154 141 0 0 chr3 106066155 106066347 -111970811 + L1PB1 LINE L1 5806 5997 -154 350 248 50 10 chr3 106067216 106067317 -111969841 + MIR SINE MIR 50 154 -108 1462 204 7 18 chr3 106067333 106067607 -111969551 + AluJo SINE Alu 12 282 -30 450 272 75 14 chr3 106070657 106070804 -111966354 - L2 LINE L2 -1 3271 3116 466 310 56 7 chr3 106070891 106071033 -111966125 - L3 LINE CR1 -11 1566 1418 386 301 174 5 chr3 106071072 106071268 -111965890 - MIR SINE MIR -31 231 3 * 808 257 132 58 chr3 106071268 106071671 -111965487 - L3 LINE CR1 -243 1334 900 573 202 0 0 chr3 106072188 106072292 -111964866 - U13 snRNA snRNA 0 104 1 685 244 22 0 chr3 106072622 106072802 -111964356 + MER5A DNA MER1_type 3 186 -3 219 88 0 0 chr3 106073665 106073699 -111963459 + (TG)n Simple_repeat Simple_repeat 1 34 0 7911 26 12 17 chr3 106074236 106075961 -111961197 + L1PA3 LINE L1 4434 6155 0 1134 181 108 0 chr3 106076288 106076576 -111960582 - MER33 DNA MER1_type -4 320 2 351 302 60 66 chr3 106076627 106076809 -111960349 + L3 LINE CR1 1396 1576 -1 251 320 10 48 chr3 106077007 106077110 -111960048 - L2 LINE L2 -1 3271 3173 1096 224 0 18 chr3 106078188 106078416 -111958742 + MER58A DNA MER1_type 1 224 0 385 266 15 118 chr3 106078458 106078661 -111958497 + MIR3 SINE MIR 16 197 -11 1850 126 115 8 chr3 106078722 106079078 -111958080 + MSTA LTR MaLR 35 428 0 3489 78 16 0 chr3 106079089 106079601 -111957557 + L1PA13 LINE L1 5263 5782 -386 1713 109 0 0 chr3 106079604 106079860 -111957298 + L1PA13 LINE L1 5904 6159 -4 22 0 0 0 chr3 106080678 106080700 -111956458 + AT_rich Low_complexity Low_complexity 1 22 0 472 302 80 11 chr3 106080824 106081011 -111956147 + MIR SINE MIR 55 253 -9 298 346 0 0 chr3 106081433 106081563 -111955595 - MER117 DNA MER1_type -29 168 39 534 204 19 9 chr3 106082188 106082296 -111954862 + FRAM SINE Alu 38 146 -30 203 88 29 0 chr3 106082296 106082330 -111954828 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1407 224 34 22 chr3 106082337 106082855 -111954303 + MER77 LTR ERV1 54 601 -4 4683 168 58 27 chr3 106083545 106084368 -111952790 - Charlie1 DNA MER1_type -18 2743 1947 1833 171 13 0 chr3 106084368 106084667 -111952491 + AluJb SINE Alu 1 303 -9 4683 168 58 27 chr3 106084667 106084782 -111952376 - Charlie1 DNA MER1_type -814 1947 1837 2066 182 124 7 chr3 106084782 106085233 -111951925 + MLT1D LTR MaLR 2 505 0 4683 168 58 27 chr3 106085233 106085402 -111951756 - Charlie1 DNA MER1_type -924 1837 1601 1348 224 15 3 chr3 106085402 106085745 -111951413 - L1P LINE L1 -2484 3662 3316 249 200 0 0 chr3 106085745 106085785 -111951373 + MER5A DNA MER1_type 150 189 0 955 206 124 0 chr3 106085828 106086022 -111951136 - MER21B LTR ERV1 -367 496 279 1979 137 48 0 chr3 106086097 106086390 -111950768 + AluSq SINE Alu 1 307 -6 805 122 198 0 chr3 106086404 106086576 -111950582 - MER21A LTR ERV1 -725 206 1 10647 119 17 23 chr3 106086576 106087957 -111949201 - MER21A-int LTR ERV1 0 4191 2804 267 0 45 23 chr3 106087957 106088001 -111949157 + (TA)n Simple_repeat Simple_repeat 1 45 0 1800 170 0 10 chr3 106088001 106088295 -111948863 - AluJb SINE Alu -21 291 1 10647 119 17 23 chr3 106088295 106088683 -111948475 - MER21A-int LTR ERV1 -1385 2806 2431 24 50 0 33 chr3 106088683 106088713 -111948445 + AT_rich Low_complexity Low_complexity 1 30 -28 510 61 0 0 chr3 106088713 106088779 -111948379 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 2204 117 0 0 chr3 106088779 106089062 -111948096 - AluSg SINE Alu -27 283 1 24 50 0 33 chr3 106089062 106089090 -111948068 + AT_rich Low_complexity Low_complexity 28 58 0 916 145 0 0 chr3 106089091 106089215 -111947943 - FLAM_C SINE Alu -19 124 1 2662 121 36 15 chr3 106089242 106089712 -111947446 - L1MA2 LINE L1 -7 6297 5818 14274 125 14 16 chr3 106089712 106091038 -111946120 - MER21A-int LTR ERV1 -1752 2439 1112 1871 169 3 10 chr3 106091038 106091346 -111945812 - AluJb SINE Alu -6 306 1 1508 169 3 92 chr3 106091346 106091672 -111945486 - AluJo SINE Alu -15 297 1 14274 125 14 16 chr3 106091672 106092857 -111944301 - MER21A-int LTR ERV1 -3077 1114 1 1295 133 92 37 chr3 106092857 106093128 -111944030 - MER21A LTR ERV1 0 931 646 861 174 0 45 chr3 106093225 106093403 -111943755 + MER21-int LTR ERV1 586 755 -3436 292 176 0 0 chr3 106093404 106093455 -111943703 + MER52A LTR ERV1 1179 1229 -526 845 156 114 0 chr3 106093550 106093717 -111943441 - MER21B LTR ERV1 -349 514 329 1598 189 82 25 chr3 106096146 106096317 -111940841 + MLT1C LTR MaLR 4 164 -303 1512 72 5 5 chr3 106096317 106096525 -111940633 + L1PA13 LINE L1 5950 6157 -6 1598 189 82 25 chr3 106096525 106096792 -111940366 + MLT1C LTR MaLR 164 467 0 711 214 10 45 chr3 106096962 106097163 -111939995 - L1ME3 LINE L1 -148 6014 5821 314 235 64 70 chr3 106097520 106097707 -111939451 + L1ME4a LINE L1 5614 5799 -322 527 237 112 36 chr3 106097761 106098039 -111939119 + L1ME4a LINE L1 5791 6089 -32 9389 84 1 2 chr3 106098068 106100143 -111937015 - L1PA7 LINE L1 0 6154 4077 1924 176 23 3 chr3 106100648 106101000 -111936158 + MLT1A1 LTR MaLR 1 359 -6 231 125 0 0 chr3 106101484 106101524 -111935634 + (TC)n Simple_repeat Simple_repeat 1 40 0 * 338 121 15 0 chr3 106101523 106101589 -111935569 + (CA)n Simple_repeat Simple_repeat 1 67 0 929 150 27 16 chr3 106102362 106102549 -111934609 + MER53 DNA DNA 1 189 0 190 265 44 59 chr3 106102977 106103045 -111934113 + L2 LINE L2 3204 3270 -43 612 244 36 30 chr3 106104624 106104792 -111932366 + MER5B DNA MER1_type 9 177 -1 315 104 0 0 chr3 106105167 106105215 -111931943 + (TG)n Simple_repeat Simple_repeat 1 48 0 186 209 0 0 chr3 106105215 106105258 -111931900 + GA-rich Low_complexity Low_complexity 2 44 0 274 266 0 0 chr3 106105935 106106014 -111931144 - LTR67 LTR ERVL 0 557 479 339 213 11 32 chr3 106106143 106106237 -111930921 - LTR67 LTR ERVL -66 491 400 306 309 56 19 chr3 106106450 106106612 -111930546 + HAL1b LINE L1 1174 1341 -7 191 171 0 186 chr3 106106766 106106836 -111930322 + MIR SINE MIR 109 165 -97 11565 31 5 0 chr3 106106978 106108625 -111928533 + L1P1 LINE L1 3944 5596 -559 5000 153 24 9 chr3 106108725 106109747 -111927411 - L1MA9 LINE L1 -111 6201 5164 12034 53 12 1 chr3 106110419 106111420 -111925738 - L1P LINE L1 -3730 2416 1387 190 0 67 0 chr3 106111420 106111450 -111925708 + (CATTT)n Simple_repeat Simple_repeat 4 35 0 12034 53 12 1 chr3 106111450 106112059 -111925099 - L1P LINE L1 -4759 1387 787 3708 27 0 0 chr3 106112160 106112598 -111924560 + L1PA4 LINE L1 5717 6154 -1 23 78 0 0 chr3 106112598 106112649 -111924509 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr3 106112954 106112975 -111924183 + AT_rich Low_complexity Low_complexity 1 21 0 1599 162 31 37 chr3 106112975 106113327 -111923831 + L1M3 LINE L1 5284 5633 -547 3419 149 28 2 chr3 106113347 106113623 -111923535 + Tigger1 DNA MER2_type 26 293 -2125 201 39 0 0 chr3 106113623 106113649 -111923509 + (TG)n Simple_repeat Simple_repeat 2 27 0 3419 149 28 2 chr3 106113649 106113954 -111923204 + Tigger1 DNA MER2_type 293 622 -1796 288 68 0 0 chr3 106113957 106114001 -111923157 + L1PA6 LINE L1 6106 6149 -5 25 31 0 0 chr3 106114568 106114600 -111922558 + AT_rich Low_complexity Low_complexity 1 32 0 1520 186 95 50 chr3 106115327 106115769 -111921389 - MLT1C LTR MaLR 0 467 6 234 118 0 0 chr3 106116018 106116052 -111921106 + U1 snRNA snRNA 4 37 -128 1623 91 0 0 chr3 106116188 106116418 -111920740 - L1P LINE L1 -5913 233 4 1381 215 112 39 chr3 106116632 106117097 -111920061 - MLT1D LTR MaLR 0 505 7 480 301 92 0 chr3 106117987 106118160 -111918998 + MER5A DNA MER1_type 1 189 0 480 129 0 0 chr3 106118303 106118388 -111918770 - L1MA9 LINE L1 -5 6307 6223 363 281 59 22 chr3 106118488 106118623 -111918535 + MLT1K LTR MaLR 108 247 -341 833 252 29 8 chr3 106118682 106118924 -111918234 + MLT1K LTR MaLR 342 588 0 1565 146 154 107 chr3 106120083 106120571 -111916587 - MLT2B1 LTR ERVL -7 513 3 254 296 0 0 chr3 106122527 106122581 -111914577 + L2 LINE L2 3210 3263 -9 4827 150 53 27 chr3 106123360 106124643 -111912515 + L1MA4A LINE L1 4996 6302 -1 218 272 221 19 chr3 106124854 106125012 -111912146 + L2 LINE L2 3118 3307 -6 453 288 27 36 chr3 106125160 106125379 -111911779 - LTR33 LTR ERVL 0 521 305 2194 129 0 3 chr3 106125987 106126298 -111910860 - AluSx SINE Alu -2 310 1 290 111 56 0 chr3 106126630 106126684 -111910474 + CT-rich Low_complexity Low_complexity 2 58 0 180 148 19 37 chr3 106127816 106127870 -111909288 + (CA)n Simple_repeat Simple_repeat 2 54 0 371 216 170 26 chr3 106127935 106128103 -111909055 + MLT1J2 LTR MaLR 264 409 0 24 0 0 0 chr3 106128342 106128366 -111908792 + AT_rich Low_complexity Low_complexity 1 24 0 244 280 127 33 chr3 106128424 106128699 -111908459 - L1ME4a LINE L1 -6 6115 5815 348 24 0 0 chr3 106128832 106128873 -111908285 + (TG)n Simple_repeat Simple_repeat 2 42 0 1170 253 11 8 chr3 106129378 106129643 -111907515 + MER45C DNA AcHobo 1 266 -687 254 387 105 8 chr3 106129929 106130053 -111907105 + L2 LINE L2 3125 3260 -12 931 48 16 8 chr3 106130585 106130710 -111906448 + AluY SINE Alu 174 299 -12 320 200 10 30 chr3 106131271 106131371 -111905787 - L1MB4 LINE L1 -2 6181 6083 2083 135 7 0 chr3 106131513 106131810 -111905348 - AluSx SINE Alu -13 299 1 202 312 93 20 chr3 106133391 106133524 -111903634 + MER5A DNA MER1_type 6 158 -31 517 203 0 109 chr3 106134144 106134272 -111902886 + L2 LINE L2 3200 3313 0 2274 123 0 0 chr3 106134311 106134620 -111902538 + AluSq SINE Alu 1 309 -4 261 83 0 0 chr3 106136429 106136465 -111900693 + (A)n Simple_repeat Simple_repeat 1 36 0 1747 204 27 27 chr3 106136922 106137290 -111899868 - MLT1A2 LTR MaLR -6 368 1 3664 160 20 12 chr3 106137971 106138663 -111898495 - L1MB4 LINE L1 -2 6178 5481 246 32 0 0 chr3 106139634 106139665 -111897493 + (CA)n Simple_repeat Simple_repeat 2 32 0 433 234 82 54 chr3 106140029 106140213 -111896945 + L1ME LINE L1 5542 5730 -391 2155 204 101 13 chr3 106140285 106140740 -111896418 + MLT2B3 LTR ERVL 3 497 -57 1398 96 0 5 chr3 106140815 106141002 -111896156 - THE1B LTR MaLR -143 221 36 262 61 0 0 chr3 106141002 106141035 -111896123 + MLT2B3 LTR ERVL 522 554 0 23 33 0 0 chr3 106141216 106141246 -111895912 + AT_rich Low_complexity Low_complexity 1 30 0 2843 85 0 3 chr3 106142177 106142541 -111894617 - THE1B LTR MaLR -1 363 1 247 274 237 37 chr3 106142620 106142755 -111894403 + MIR3 SINE MIR 20 181 -27 24 32 0 0 chr3 106143150 106143181 -111893977 + AT_rich Low_complexity Low_complexity 1 31 0 238 186 47 0 chr3 106144600 106144643 -111892515 - MER70B LTR ERVL -80 498 454 1468 126 63 43 chr3 106145461 106145762 -111891396 + L1MA6 LINE L1 5993 6299 -1 312 311 54 67 chr3 106147203 106147534 -111889624 - L2 LINE L2 -423 2891 2565 7679 24 0 0 chr3 106148190 106149396 -111887762 - L1PA4 LINE L1 0 6155 4949 1550 218 96 21 chr3 106150374 106150841 -111886317 - MLT1D LTR MaLR -3 502 1 685 296 39 0 chr3 106151029 106151208 -111885950 - LTR33 LTR ERVL -335 186 1 259 305 17 17 chr3 106151299 106151417 -111885741 - MLT1H LTR MaLR -13 536 419 329 306 39 19 chr3 106152133 106152391 -111884767 - L1 LINE L1 -1594 4552 4290 387 354 77 41 chr3 106152821 106153524 -111883634 - L2 LINE L2 -212 3060 2317 955 189 29 0 chr3 106154170 106154345 -111882813 - L1PA16 LINE L1 -6 6160 5981 420 111 0 0 chr3 106154346 106154409 -111882749 + L1PA8 LINE L1 6105 6167 -5 288 167 0 0 chr3 106154407 106154455 -111882703 - L1PA16 LINE L1 -179 5987 5940 * 872 149 1 1 chr3 106154444 106154591 -111882567 - L1MD1 LINE L1 -342 5824 5693 1461 128 78 4 chr3 106154643 106154900 -111882258 - L1MB2 LINE L1 -7 6164 5889 272 313 25 0 chr3 106155702 106155782 -111881376 + L2 LINE L2 3183 3264 -8 2668 80 11 0 chr3 106156565 106156914 -111880244 - THE1A LTR MaLR -2 353 1 209 83 28 0 chr3 106157086 106157122 -111880036 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 1110 50 7 0 chr3 106157122 106157261 -111879897 - MER107 DNA MER1_type -52 145 6 324 70 0 0 chr3 106158942 106158985 -111878173 + (CA)n Simple_repeat Simple_repeat 1 43 0 466 306 53 45 chr3 106159098 106159363 -111877795 - L1 LINE L1 -1539 4607 4341 498 301 45 0 chr3 106159657 106159905 -111877253 - L1 LINE L1 -2145 4001 3734 962 219 90 64 chr3 106160159 106160615 -111876543 - LTR37B LTR ERV1 0 468 1 2151 133 0 3 chr3 106162108 106162416 -111874742 + AluSq SINE Alu 3 309 -4 2485 143 31 12 chr3 106162651 106163072 -111874086 + Tigger2a DNA MER2_type 1 429 -5 486 262 20 54 chr3 106163085 106163234 -111873924 + MER5B DNA MER1_type 35 178 0 1811 193 21 21 chr3 106164613 106164987 -111872171 + MLT1A2 LTR MaLR 1 374 0 1853 128 147 26 chr3 106165252 106165634 -111871524 + MSTA LTR MaLR 1 428 0 569 200 31 15 chr3 106166221 106166351 -111870807 - MER103 DNA DNA -31 135 4 233 231 138 31 chr3 106166745 106166875 -111870283 - L1ME4a LINE L1 -18 6103 5960 226 316 21 0 chr3 106166971 106167066 -111870092 - L1ME4a LINE L1 -2038 5770 5674 333 289 170 7 chr3 106167365 106167500 -111869658 + MIR SINE MIR 76 232 -30 193 197 197 66 chr3 106167520 106167642 -111869516 - MIR SINE MIR -10 252 115 682 153 69 0 chr3 106168386 106168517 -111868641 - L1MB3 LINE L1 -2 6181 6042 1346 111 20 0 chr3 106168518 106168716 -111868442 - Tigger1 DNA MER2_type -420 1998 1797 * 1921 114 16 7 chr3 106168708 106169016 -111868142 - Tigger1 DNA MER2_type -1510 908 598 379 296 104 36 chr3 106169017 106169325 -111867833 - L1ME2 LINE L1 -278 5886 5558 189 0 0 0 chr3 106169349 106169370 -111867788 + (TG)n Simple_repeat Simple_repeat 2 22 0 221 148 0 98 chr3 106169853 106169914 -111867244 + (T)n Simple_repeat Simple_repeat 1 55 0 290 75 0 0 chr3 106169925 106169965 -111867193 - L1PA6 LINE L1 -8 6146 6107 980 303 84 56 chr3 106170524 106171252 -111865906 - L2 LINE L2 0 3313 2554 2168 101 10 3 chr3 106171252 106171548 -111865610 + AluSx SINE Alu 2 299 -13 980 303 84 56 chr3 106171548 106171812 -111865346 - L2 LINE L2 -759 2554 2299 2310 94 3 3 chr3 106172211 106172508 -111864650 + AluSp SINE Alu 1 297 -16 25 83 0 0 chr3 106172859 106172919 -111864239 + AT_rich Low_complexity Low_complexity 1 60 0 192 40 0 0 chr3 106172939 106172964 -111864194 + (CAA)n Simple_repeat Simple_repeat 3 27 0 375 356 69 22 chr3 106173060 106173377 -111863781 - L2 LINE L2 -1277 2037 1706 352 348 54 39 chr3 106174544 106174803 -111862355 - HAL1 LINE L1 -19 2488 2226 21 0 0 0 chr3 106174826 106174847 -111862311 + AT_rich Low_complexity Low_complexity 1 21 0 3330 171 49 29 chr3 106175283 106175302 -111861856 - L1MB7 LINE L1 0 6184 6167 1666 164 28 21 chr3 106175302 106175589 -111861569 + AluJo SINE Alu 1 289 -23 3330 171 49 29 chr3 106175589 106175922 -111861236 - L1MB7 LINE L1 -17 6167 5842 2054 134 0 0 chr3 106175922 106176214 -111860944 - AluSx SINE Alu -17 295 4 3330 171 49 29 chr3 106176214 106176596 -111860562 - L1MB7 LINE L1 -342 5842 5434 1107 149 87 0 chr3 106176616 106176811 -111860347 - L1PB4 LINE L1 -7 6149 5938 1865 175 42 10 chr3 106176811 106177310 -111859848 - L1MB7 LINE L1 -745 5433 4918 1530 256 70 8 chr3 106177308 106177706 -111859452 - L1M4 LINE L1 -6112 430 8 * 634 254 47 47 chr3 106177880 106178136 -111859022 - HAL1 LINE L1 -727 1780 1525 675 231 189 100 chr3 106178155 106178536 -111858622 - MLT1H LTR MaLR -16 533 119 446 283 166 18 chr3 106178612 106178955 -111858203 - HAL1 LINE L1 -967 1540 1147 23 0 0 71 chr3 106178992 106179034 -111858124 + AT_rich Low_complexity Low_complexity 1 39 0 191 360 99 77 chr3 106180339 106180458 -111856700 + L2 LINE L2 2837 2965 -307 3017 143 42 37 chr3 106180458 106181003 -111856155 - LTR14 LTR ERVK 0 548 1 191 360 99 77 chr3 106181003 106181105 -111856053 + L2 LINE L2 2965 3063 -209 297 128 0 0 chr3 106181217 106181264 -111855894 + (TCCC)n Simple_repeat Simple_repeat 3 49 0 540 285 86 34 chr3 106181798 106182216 -111854942 - L1MC5 LINE L1 -48 7913 7474 2233 110 0 0 chr3 106182300 106182601 -111854557 + AluSx SINE Alu 1 301 -11 286 148 0 0 chr3 106182653 106182707 -111854451 - Charlie1b DNA MER1_type -71 452 399 1193 224 3 3 chr3 106182707 106183001 -111854157 - L1 LINE L1 -928 5218 4925 762 172 0 0 chr3 106183049 106183177 -111853981 + L1PB4 LINE L1 6020 6147 -9 40 0 0 0 chr3 106183214 106183254 -111853904 + AT_rich Low_complexity Low_complexity 1 40 0 1184 203 31 75 chr3 106183305 106183664 -111853494 - Charlie1b DNA MER1_type -167 356 14 886 284 125 15 chr3 106183835 106184243 -111852915 + L1MC4a LINE L1 6413 6865 -943 1384 161 17 57 chr3 106184347 106184523 -111852635 - AluJo SINE Alu -25 287 126 2798 73 3 0 chr3 106184523 106184877 -111852281 - THE1A LTR MaLR 0 355 1 1384 161 17 57 chr3 106184877 106184999 -111852159 - AluJo SINE Alu -186 126 1 884 175 19 6 chr3 106185070 106185230 -111851928 - FRAM SINE Alu -12 164 3 28 0 0 0 chr3 106186272 106186300 -111850858 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr3 106186329 106186352 -111850806 + (CA)n Simple_repeat Simple_repeat 1 23 0 25 0 0 0 chr3 106186690 106186715 -111850443 + AT_rich Low_complexity Low_complexity 1 25 0 4607 142 26 15 chr3 106188384 106189188 -111847970 - L1MC1 LINE L1 -5 6328 5516 246 200 0 0 chr3 106189958 106190003 -111847155 - L2 LINE L2 -9 3263 3219 1916 59 111 15 chr3 106191714 106191984 -111845174 + AluY SINE Alu 1 296 -15 5624 20 0 1 chr3 106192776 106193451 -111843707 + L1PA4 LINE L1 5500 6173 0 219 241 181 36 chr3 106193820 106193903 -111843255 + MIR SINE MIR 18 112 -96 1851 121 114 0 chr3 106194001 106194308 -111842850 - L1PB4 LINE L1 -7 6149 5808 2250 162 127 20 chr3 106195212 106195520 -111841638 - MLT1D LTR MaLR 0 505 131 788 210 88 117 chr3 106195520 106195896 -111841262 + MLT1A1 LTR MaLR 1 365 0 2250 162 127 20 chr3 106195896 106196043 -111841115 - MLT1D LTR MaLR -374 131 1 384 252 109 14 chr3 106197433 106197580 -111839578 - Charlie8 DNA MER1_type -2256 161 1 1669 192 0 19 chr3 106197895 106198207 -111838951 - AluJo SINE Alu -6 306 1 347 270 113 32 chr3 106199628 106199876 -111837282 + LTR67 LTR ERVL 271 538 -19 760 156 30 0 chr3 106201376 106201511 -111835647 - MER5B DNA MER1_type 0 178 40 349 266 42 49 chr3 106201682 106201825 -111835333 + L2 LINE L2 3171 3312 -1 699 186 0 0 chr3 106201974 106202087 -111835071 + AluJb SINE Alu 1 113 -199 286 371 106 8 chr3 106204264 106204501 -111832657 + MIR SINE MIR 3 262 0 412 337 22 4 chr3 106204876 106205028 -111832130 + MIR3 SINE MIR 28 178 -30 26 0 0 0 chr3 106206219 106206245 -111830913 + AT_rich Low_complexity Low_complexity 1 26 0 407 258 45 84 chr3 106207127 106207282 -111829876 + HAL1 LINE L1 1796 1944 -563 393 167 0 0 chr3 106207423 106207495 -111829663 + L1 LINE L1 5155 5226 -920 1452 142 120 29 chr3 106207495 106207769 -111829389 + AluJo SINE Alu 1 299 -13 29 28 0 0 chr3 106207774 106207810 -111829348 + AT_rich Low_complexity Low_complexity 1 36 0 448 182 21 33 chr3 106207820 106207952 -111829206 + L1 LINE L1 5211 5339 -813 14361 182 33 29 chr3 106207953 106213826 -111823332 + L1P5 LINE L1 3 6008 -859 180 0 0 0 chr3 106213826 106213846 -111823312 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 14361 182 33 29 chr3 106213846 106214340 -111822818 + L1P5 LINE L1 6008 6498 -369 1411 132 5 5 chr3 106214340 106214545 -111822613 + AluSc SINE Alu 1 205 -104 709 331 29 0 chr3 106214584 106214862 -111822296 - LTR33 LTR ERVL -235 286 1 27 0 0 0 chr3 106215202 106215229 -111821929 + AT_rich Low_complexity Low_complexity 1 27 0 375 305 114 12 chr3 106215338 106215914 -111821244 + L1ME3A LINE L1 5296 5929 -241 251 114 0 0 chr3 106216338 106216373 -111820785 - U2 snRNA snRNA -153 35 1 538 306 133 55 chr3 106217138 106217717 -111819441 + L2 LINE L2 2232 2855 -459 1036 217 5 5 chr3 106217974 106218177 -111818981 - MER3 DNA MER1_type 0 209 7 261 118 0 0 chr3 106218267 106218318 -111818840 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 275 273 68 11 chr3 106218325 106218413 -111818745 + L2 LINE L2 3179 3271 -1 1064 220 23 0 chr3 106218951 106219169 -111817989 + MER58A DNA MER1_type 2 224 0 2337 86 3 7 chr3 106219304 106219606 -111817552 - AluSx SINE Alu -11 301 1 1046 243 18 5 chr3 106220396 106220618 -111816540 + MIR SINE MIR 17 241 -21 1708 87 0 14 chr3 106220880 106221098 -111816060 - AluSx SINE Alu -52 260 46 2813 106 18 48 chr3 106221171 106221317 -111815841 - L1MB2 LINE L1 0 6171 6022 1909 134 7 10 chr3 106221317 106221615 -111815543 - AluSx SINE Alu -7 305 9 2813 106 18 48 chr3 106221615 106221970 -111815188 - L1MB2 LINE L1 -149 6022 5685 515 280 104 26 chr3 106222018 106222231 -111814927 + MIR SINE MIR 15 249 -13 27 49 0 0 chr3 106222843 106222884 -111814274 + AT_rich Low_complexity Low_complexity 1 41 0 3786 224 54 2 chr3 106223127 106223960 -111813198 + L1M2 LINE L1 1075 1950 -4899 199 300 60 0 chr3 106224030 106224080 -111813078 - MIR SINE MIR -60 148 96 451 331 142 65 chr3 106224194 106225026 -111812132 + L2 LINE L2 1880 2803 -511 2338 110 0 0 chr3 106225026 106225335 -111811823 - AluSq SINE Alu -4 309 1 451 331 142 65 chr3 106225335 106225504 -111811654 + L2 LINE L2 2803 2958 -356 706 296 61 18 chr3 106225641 106226033 -111811125 + L1ME3 LINE L1 5541 5949 -213 1091 227 77 40 chr3 106226164 106226490 -111810668 - MER2 DNA MER2_type -7 338 1 597 333 59 63 chr3 106226985 106227999 -111809159 + L2 LINE L2 2230 3239 -33 730 300 104 45 chr3 106229088 106229212 -111807946 - L2 LINE L2 -4 3309 3194 1192 195 35 0 chr3 106229212 106229438 -111807720 - MER46A DNA MER2_type -1 235 2 730 300 104 45 chr3 106229438 106229509 -111807649 - L2 LINE L2 -119 3194 3129 225 108 0 0 chr3 106229509 106229546 -111807612 + (TG)n Simple_repeat Simple_repeat 1 37 0 730 300 104 45 chr3 106229546 106230020 -111807138 - L2 LINE L2 -184 3129 2595 402 21 0 0 chr3 106230057 106230104 -111807054 + (TA)n Simple_repeat Simple_repeat 2 48 0 479 319 9 43 chr3 106230221 106230431 -111806727 - L2 LINE L2 -724 2590 2388 360 274 125 24 chr3 106230829 106230997 -111806161 - MIR3 SINE MIR -8 200 16 2618 194 25 20 chr3 106231839 106231876 -111805282 - MLT2B1 LTR ERVL -2 552 517 356 59 20 0 chr3 106231876 106231927 -111805231 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 2618 194 25 20 chr3 106231927 106232463 -111804695 - MLT2B1 LTR ERVL -37 517 1 1015 164 34 29 chr3 106232467 106232675 -111804483 - ERVL-B1 LTR ERVL -12 5752 5544 348 24 0 0 chr3 106232683 106232724 -111804434 + (CA)n Simple_repeat Simple_repeat 2 42 0 236 213 0 0 chr3 106232764 106232811 -111804347 + (TA)n Simple_repeat Simple_repeat 1 47 0 6328 137 24 7 chr3 106232811 106233819 -111803339 - ERVL-B1 LTR ERVL -197 5567 4543 21 0 0 0 chr3 106233827 106233848 -111803310 + AT_rich Low_complexity Low_complexity 1 21 0 5449 111 33 8 chr3 106234372 106234690 -111802468 - L1PA15 LINE L1 -8 6157 5848 2409 84 3 0 chr3 106234690 106234987 -111802171 - AluSp SINE Alu -15 298 1 5449 111 33 8 chr3 106234987 106235550 -111801608 - L1PA15 LINE L1 -317 5848 5254 198 0 0 0 chr3 106235565 106235587 -111801571 + (A)n Simple_repeat Simple_repeat 1 22 0 348 64 0 0 chr3 106236570 106236617 -111800541 + (CA)n Simple_repeat Simple_repeat 2 48 0 7391 138 23 18 chr3 106237276 106238569 -111798589 - HSMAR2 DNA Mariner -1 1301 2 1394 154 7 25 chr3 106238769 106239055 -111798103 - L1MA4 LINE L1 -8 6292 6012 231 36 0 0 chr3 106239056 106239084 -111798074 + (TTCCC)n Simple_repeat Simple_repeat 1 28 0 1160 91 0 11 chr3 106239117 106239293 -111797865 - L1PA15 LINE L1 -1135 5011 4838 334 109 109 0 chr3 106239288 106239352 -111797806 + L1P LINE L1 5359 5429 -702 * 759 268 127 41 chr3 106239511 106240017 -111797141 - L2 LINE L2 0 3313 2695 2848 104 4 19 chr3 106240653 106241114 -111796044 + L1PA8 LINE L1 5719 6172 0 5454 101 6 8 chr3 106241133 106242153 -111795005 + L1PA12 LINE L1 5017 6036 -132 662 125 22 37 chr3 106242211 106242347 -111794811 + L1PA15 LINE L1 6030 6163 -2 246 258 72 0 chr3 106242471 106242568 -111794590 - L1M4 LINE L1 -1074 5072 4969 2284 108 19 25 chr3 106242575 106242935 -111794223 + THE1B LTR MaLR 7 364 0 300 289 0 33 chr3 106242935 106243025 -111794133 - L1M4 LINE L1 -1174 4972 4886 650 284 71 11 chr3 106243121 106243502 -111793656 - L1M4 LINE L1 -2200 3946 3543 3287 301 34 28 chr3 106243519 106245141 -111792017 + L1PBa LINE L1 3 1633 -5230 2793 185 8 2 chr3 106245112 106245621 -111791537 + L1PB3 LINE L1 1 512 -5692 * 1512 172 0 4 chr3 106245623 106245879 -111791279 + AluJb SINE Alu 56 312 0 8066 175 28 15 chr3 106245882 106245942 -111791216 + L1PB3 LINE L1 3243 3301 -2910 424 121 0 55 chr3 106245942 106246033 -111791125 + L1PA11 LINE L1 6088 6173 -1 8066 175 28 15 chr3 106246033 106247183 -111789975 + L1PB3 LINE L1 3301 4434 -1777 303 85 0 0 chr3 106247183 106247230 -111789928 + (CA)n Simple_repeat Simple_repeat 2 48 0 8066 175 28 15 chr3 106247230 106248943 -111788215 + L1PB3 LINE L1 4434 6204 -7 24 0 0 0 chr3 106248976 106249000 -111788158 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr3 106249227 106249255 -111787903 + AT_rich Low_complexity Low_complexity 1 28 0 2025 103 0 0 chr3 106249533 106249818 -111787340 + AluSg SINE Alu 23 307 0 990 216 37 37 chr3 106250933 106251151 -111786007 - MER58A DNA MER1_type -3 221 4 1058 177 42 23 chr3 106251228 106251443 -111785715 - MER20 DNA MER1_type 0 219 1 279 289 74 22 chr3 106252113 106252248 -111784910 - L3 LINE CR1 -62 1515 1374 182 339 0 31 chr3 106252441 106252506 -111784652 - L2 LINE L2 -16 3256 3194 1068 194 55 0 chr3 106253054 106253271 -111783887 + MER46A DNA MER2_type 1 229 -7 273 29 0 0 chr3 106255277 106255311 -111781847 + (CA)n Simple_repeat Simple_repeat 2 35 0 346 296 131 52 chr3 106256018 106256346 -111780812 - L1ME4a LINE L1 -187 5934 5581 308 122 0 0 chr3 106256454 106256503 -111780655 - L1 LINE L1 -959 5187 5139 236 75 0 25 chr3 106256491 106256531 -111780627 + L1MA3 LINE L1 6256 6294 -11 * 2209 121 3 10 chr3 106256726 106257040 -111780118 - AluSx SINE Alu 0 312 1 2377 85 0 19 chr3 106257045 106257352 -111779806 - AluY SINE Alu -10 301 1 1670 207 29 45 chr3 106257453 106257941 -111779217 + MLT1D LTR MaLR 26 505 0 4458 66 15 18 chr3 106258244 106259281 -111777877 + MER11A LTR ERVK 1 1266 0 234 314 29 0 chr3 106260696 106260766 -111776392 + MIR SINE MIR 64 135 -73 313 284 78 7 chr3 106261295 106261436 -111775722 + MIR SINE MIR 78 228 -34 1096 127 66 8 chr3 106261559 106261801 -111775357 + THE1B LTR MaLR 1 355 0 9362 104 27 0 chr3 106261801 106263162 -111773996 + THE1B-int LTR MaLR 1 1398 -182 * 29264 71 5 6 chr3 106263156 106268091 -111769067 + L1PA6 LINE L1 1228 6154 0 6840 137 40 11 chr3 106268080 106270433 -111766725 + L1MA3 LINE L1 3879 6305 0 * 486 242 54 48 chr3 106270453 106271418 -111765740 + L1ME1 LINE L1 3676 4634 -1700 1594 181 0 36 chr3 106271418 106271721 -111765437 + AluJo SINE Alu 1 292 -20 486 242 54 48 chr3 106271721 106273095 -111764063 + L1ME1 LINE L1 4634 6276 -58 671 185 33 26 chr3 106273104 106273255 -111763903 + MER6A DNA MER2_type 59 210 -395 21 0 0 0 chr3 106273916 106273937 -111763221 + AT_rich Low_complexity Low_complexity 1 21 0 1463 52 0 0 chr3 106274162 106274334 -111762824 + AluY SINE Alu 131 302 -9 1540 223 111 25 chr3 106275069 106275545 -111761613 - LTR40a LTR ERVL -2 517 1 184 297 119 42 chr3 106275632 106275750 -111761408 - L2 LINE L2 -5 3308 3182 713 228 37 0 chr3 106276843 106277005 -111760153 + MIR SINE MIR 84 251 -11 261 250 130 10 chr3 106277099 106277199 -111759959 + MIR SINE MIR 96 207 -55 21 57 0 0 chr3 106280251 106280286 -111756872 + AT_rich Low_complexity Low_complexity 1 35 0 266 240 169 71 chr3 106280347 106280501 -111756657 - MIR3 SINE MIR -39 169 1 299 212 24 0 chr3 106280637 106280722 -111756436 + (TA)n Simple_repeat Simple_repeat 2 88 0 477 254 170 12 chr3 106280847 106281012 -111756146 + MIR SINE MIR 59 249 -13 192 262 24 0 chr3 106280978 106281020 -111756138 + L2 LINE L2 3219 3261 -11 * 458 246 31 15 chr3 106281937 106281961 -111755197 - MIR SINE MIR -65 197 175 1280 168 150 57 chr3 106281961 106282295 -111754863 - MLT1A1 LTR MaLR 0 365 1 458 246 31 15 chr3 106282295 106282400 -111754758 - MIR SINE MIR -87 175 66 189 257 248 9 chr3 106282459 106282568 -111754590 - L2 LINE L2 0 3313 3179 310 179 167 0 chr3 106283462 106283546 -111753612 - MIR SINE MIR -56 206 109 205 268 18 0 chr3 106284452 106284508 -111752650 - MIR SINE MIR -87 175 119 1945 149 0 0 chr3 106284525 106284794 -111752364 + AluSx SINE Alu 24 292 -20 1682 236 94 25 chr3 106284797 106285267 -111751891 - MLT1E LTR MaLR 0 593 92 2390 88 0 0 chr3 106285820 106286128 -111751030 + AluY SINE Alu 1 308 -3 472 209 144 39 chr3 106287014 106287167 -111749991 - MER5B DNA MER1_type -9 169 1 21 0 0 0 chr3 106287518 106287539 -111749619 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr3 106287875 106287910 -111749248 + AT_rich Low_complexity Low_complexity 1 35 0 1833 132 79 28 chr3 106289051 106289406 -111747752 + THE1C LTR MaLR 3 375 0 201 215 13 63 chr3 106289843 106289922 -111747236 + CT-rich Low_complexity Low_complexity 2 76 0 861 104 8 0 chr3 106290973 106291098 -111746060 + AluY SINE Alu 175 300 -11 879 209 11 21 chr3 106292150 106292341 -111744817 - MER5A DNA MER1_type 0 189 1 189 172 219 16 chr3 106292426 106292490 -111744668 - MER5A DNA MER1_type -77 112 36 2657 210 13 24 chr3 106293522 106294065 -111743093 + MLT1F LTR MaLR 1 537 -5 2399 218 56 9 chr3 106296668 106297236 -111739922 - L1ME1 LINE L1 -104 6062 5468 360 299 14 42 chr3 106297739 106297883 -111739275 + MIR3 SINE MIR 2 141 -67 3351 216 9 3 chr3 106297898 106298547 -111738611 + MER82 DNA MER2_type 1 653 0 21 0 0 0 chr3 106299446 106299467 -111737691 + AT_rich Low_complexity Low_complexity 1 21 0 181 216 0 0 chr3 106301102 106301139 -111736019 - L2 LINE L2 -2 3311 3275 509 296 72 0 chr3 106301938 106302090 -111735068 + MIR3 SINE MIR 29 191 -17 1730 67 0 5 chr3 106302415 106302639 -111734519 + L1PA7 LINE L1 5931 6153 -1 2027 141 0 7 chr3 106303804 106304108 -111733050 - AluSx SINE Alu -10 302 1 380 348 44 13 chr3 106304205 106304363 -111732795 - MIR3 SINE MIR -15 193 31 581 187 56 0 chr3 106304805 106304912 -111732246 - MER58B DNA MER1_type 0 341 229 383 137 0 0 chr3 106304899 106304950 -111732208 - MER58B DNA MER1_type -282 59 9 * 232 295 0 0 chr3 106305684 106305745 -111731413 + L2 LINE L2 3251 3311 -2 396 300 105 84 chr3 106306606 106306730 -111730428 - L2 LINE L2 -22 3291 3171 3864 118 55 7 chr3 106306730 106307314 -111729844 - LTR9 LTR ERV1 0 612 1 396 300 105 84 chr3 106307314 106308014 -111729144 - L2 LINE L2 -142 3171 2435 675 253 68 32 chr3 106308064 106308254 -111728904 + MIR SINE MIR 45 241 -21 1174 329 212 27 chr3 106308308 106309622 -111727536 - L2 LINE L2 -924 2390 834 2475 199 8 45 chr3 106310254 106310781 -111726377 - MLT1E2 LTR MaLR -2 624 118 542 242 108 15 chr3 106310787 106311047 -111726111 - L1MCc LINE L1 -4904 2037 1754 2166 227 45 42 chr3 106311118 106311808 -111725350 - L1MCc LINE L1 -4848 1574 888 2863 7 0 0 chr3 106311808 106312118 -111725040 - AluY SINE Alu -1 310 1 2166 227 45 42 chr3 106312118 106312173 -111724985 - L1MCc LINE L1 -5534 888 835 437 316 38 38 chr3 106312383 106312592 -111724566 - L1MCc LINE L1 -5969 454 246 308 198 111 95 chr3 106312630 106312756 -111724402 - L1MCc LINE L1 -6271 152 25 347 333 91 30 chr3 106313205 106313403 -111723755 + L2 LINE L2 1929 2138 -1176 225 234 0 0 chr3 106313580 106313627 -111723531 + MIR SINE MIR 90 136 -72 * 2979 276 91 17 chr3 106313601 106314668 -111722490 + L2 LINE L2 2010 3141 -172 591 331 107 15 chr3 106314670 106315045 -111722113 - MLT1I LTR MaLR 0 409 1 369 0 0 0 chr3 106315062 106315103 -111722055 + (TG)n Simple_repeat Simple_repeat 2 42 0 2180 117 0 23 chr3 106315105 106315412 -111721746 - AluSx SINE Alu -12 300 1 642 231 6 35 chr3 106315414 106315587 -111721571 + L2 LINE L2 3146 3313 0 216 67 0 0 chr3 106316320 106316350 -111720808 + (A)n Simple_repeat Simple_repeat 1 30 0 24 0 0 0 chr3 106316755 106316779 -111720379 + AT_rich Low_complexity Low_complexity 1 24 0 28 48 0 0 chr3 106317129 106317171 -111719987 + AT_rich Low_complexity Low_complexity 1 42 0 218 339 75 40 chr3 106317425 106317599 -111719559 + L2 LINE L2 2872 3051 -221 706 132 0 0 chr3 106318587 106318693 -111718465 - U6 snRNA snRNA -1 106 1 940 119 89 72 chr3 106318892 106319127 -111718031 - L1MA8 LINE L1 -1 6290 6052 293 331 54 24 chr3 106320717 106320883 -111716275 + L2 LINE L2 2923 3093 -179 259 259 0 0 chr3 106321056 106321114 -111716044 - L2 LINE L2 -1 3312 3255 246 326 66 70 chr3 106321255 106321497 -111715661 - MIR SINE MIR -21 241 1 1619 185 6 32 chr3 106321754 106322067 -111715091 + AluSx SINE Alu 1 305 -7 23 33 0 0 chr3 106322347 106322377 -111714781 + AT_rich Low_complexity Low_complexity 1 30 0 989 123 26 7 chr3 106322438 106322593 -111714565 + MER46A DNA MER2_type 77 234 -2 214 287 84 54 chr3 106323170 106323337 -111713821 + L2 LINE L2 2815 2986 -286 2385 98 3 0 chr3 106324507 106324813 -111712345 - AluSp SINE Alu -6 307 1 2051 141 7 0 chr3 106324933 106325231 -111711927 - AluSx SINE Alu -12 300 1 22 0 0 0 chr3 106325273 106325295 -111711863 + AT_rich Low_complexity Low_complexity 1 22 0 1694 236 54 44 chr3 106325411 106325999 -111711159 + L1ME1 LINE L1 5566 6159 -7 254 302 104 0 chr3 106326266 106326362 -111710796 - MIR SINE MIR -66 142 37 21 57 0 0 chr3 106327015 106327050 -111710108 + AT_rich Low_complexity Low_complexity 1 35 0 1175 235 31 28 chr3 106327557 106327914 -111709244 + L1ME2 LINE L1 5797 6154 -10 22 0 0 0 chr3 106327917 106327939 -111709219 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr3 106328150 106328175 -111708983 + AT_rich Low_complexity Low_complexity 1 25 0 729 182 164 6 chr3 106328482 106328641 -111708517 - MER5A DNA MER1_type -1 188 5 576 0 0 0 chr3 106330491 106330555 -111706603 + (TA)n Simple_repeat Simple_repeat 1 64 0 8289 69 2 7 chr3 106330900 106331976 -111705182 + MER11C LTR ERVK 1 1071 0 205 273 0 0 chr3 106332363 106332407 -111704751 + (CA)n Simple_repeat Simple_repeat 1 44 0 2250 127 14 0 chr3 106333031 106333377 -111703781 - L1PA13 LINE L1 0 6163 5813 1570 218 129 2 chr3 106333822 106334234 -111702924 - L1ME1 LINE L1 -311 5855 5392 427 241 0 0 chr3 106334235 106334314 -111702844 + MER58A DNA MER1_type 1 79 -28 14173 71 6 0 chr3 106334316 106337353 -111699805 + L1PA7 LINE L1 3102 6150 -4 740 255 0 0 chr3 106337383 106337540 -111699618 + MER58A DNA MER1_type 66 222 -2 629 223 98 19 chr3 106337541 106337691 -111699467 - L1ME1 LINE L1 -744 5402 5265 183 42 0 0 chr3 106337691 106337715 -111699443 + (TA)n Simple_repeat Simple_repeat 2 25 0 629 223 98 19 chr3 106337715 106337820 -111699338 - L1ME1 LINE L1 -881 5265 5127 10057 174 12 12 chr3 106338456 106340849 -111696309 - L1P4 LINE L1 -479 5686 3291 254 176 103 44 chr3 106342591 106342659 -111694499 + MIR3 SINE MIR 114 185 -23 23 0 0 0 chr3 106343067 106343090 -111694068 + AT_rich Low_complexity Low_complexity 1 23 0 815 285 29 47 chr3 106343118 106343462 -111693696 - MER46C DNA MER2_type 0 338 1 271 289 139 35 chr3 106343470 106343531 -111693627 - MIR SINE MIR -10 252 199 1983 137 153 5 chr3 106343531 106343904 -111693254 + MSTA LTR MaLR 1 428 0 271 289 139 35 chr3 106343904 106344043 -111693115 - MIR SINE MIR -63 199 31 245 269 143 50 chr3 106344157 106344395 -111692763 + L2 LINE L2 2153 2412 -902 28 29 0 0 chr3 106345423 106345458 -111691700 + AT_rich Low_complexity Low_complexity 1 35 0 22 80 0 0 chr3 106345494 106345544 -111691614 + AT_rich Low_complexity Low_complexity 1 50 0 1666 166 4 7 chr3 106345629 106345906 -111691252 + AluJb SINE Alu 1 276 -36 192 40 0 0 chr3 106345913 106345938 -111691220 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 985 261 65 50 chr3 106346725 106347366 -111689792 - L1MC5 LINE L1 -51 7910 7260 277 288 80 8 chr3 106347344 106347469 -111689689 - L1MC4 LINE L1 -585 7457 7324 * 350 223 49 33 chr3 106347472 106347637 -111689521 - L1MC4 LINE L1 -728 7233 7083 328 135 0 0 chr3 106347653 106347705 -111689453 + MADE1 DNA Mariner 1 52 -28 188 325 147 44 chr3 106348040 106348292 -111688866 - L3b LINE CR1 -10 1573 1296 1711 189 60 62 chr3 106348482 106348751 -111688407 - MLT1D LTR MaLR -3 502 233 569 52 13 0 chr3 106348751 106348828 -111688330 + (CACCAT)n Simple_repeat Simple_repeat 4 81 0 1711 189 60 62 chr3 106348828 106349061 -111688097 - MLT1D LTR MaLR -272 233 1 351 294 87 60 chr3 106350453 106350624 -111686534 + MIR SINE MIR 30 210 -52 2203 111 0 10 chr3 106350624 106350931 -111686227 + AluSg1 SINE Alu 1 304 -5 351 294 87 60 chr3 106350931 106350977 -111686181 + MIR SINE MIR 210 253 -9 193 322 85 25 chr3 106350978 106351096 -111686062 + MIR3 SINE MIR 63 187 -21 337 331 108 0 chr3 106352360 106352508 -111684650 - MIR SINE MIR -97 165 2 423 219 0 0 chr3 106352988 106353084 -111684074 + (TGGA)n Simple_repeat Simple_repeat 4 99 0 453 295 60 0 chr3 106354694 106354843 -111682315 - MIR SINE MIR -10 252 95 1639 257 212 36 chr3 106355578 106356388 -111680770 + MER45C DNA AcHobo 1 953 0 196 263 158 21 chr3 106357394 106357489 -111679669 - L2 LINE L2 0 3313 3206 286 309 91 9 chr3 106359027 106359137 -111678021 + MIR SINE MIR 31 149 -59 185 191 0 21 chr3 106360349 106360396 -111676762 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 1010 178 22 6 chr3 106361119 106361299 -111675859 + MER5A DNA MER1_type 7 189 0 2269 211 133 17 chr3 106361717 106362464 -111674694 - L1ME2 LINE L1 -9 6155 5323 201 263 35 0 chr3 106363193 106363250 -111673908 - MIR SINE MIR -195 67 9 2500 68 0 0 chr3 106364487 106364797 -111672361 - AluY SINE Alu -1 310 1 298 352 56 0 chr3 106364949 106365074 -111672084 + L2 LINE L2 3136 3267 -5 198 366 75 33 chr3 106365089 106365450 -111671708 + L2 LINE L2 2299 2674 -640 207 344 88 34 chr3 106365569 106365953 -111671205 + L2 LINE L2 1555 1959 -1355 2040 171 45 37 chr3 106366015 106366562 -111670596 - MLT2A2 LTR ERVL 0 554 1 486 243 182 20 chr3 106366683 106366831 -111670327 - MER5A DNA MER1_type 0 189 18 187 343 141 10 chr3 106367714 106367813 -111669345 - L3 LINE CR1 -26 1551 1440 587 314 84 26 chr3 106367817 106368043 -111669115 + MIR SINE MIR 6 244 -18 180 284 40 27 chr3 106368114 106368188 -111668970 - L3 LINE CR1 -156 1421 1347 269 163 0 0 chr3 106370583 106370626 -111666532 - L2 LINE L2 -4 3309 3267 735 238 61 0 chr3 106371545 106371709 -111665449 + MER45A DNA AcHobo 5 178 0 205 301 181 0 chr3 106371721 106371804 -111665354 + L2 LINE L2 3174 3271 -1 317 338 41 28 chr3 106372182 106372327 -111664831 - L1ME3A LINE L1 -234 5936 5790 452 263 16 95 chr3 106372364 106372554 -111664604 + MIR SINE MIR 34 208 -54 205 205 0 0 chr3 106372586 106372625 -111664533 + (TA)n Simple_repeat Simple_repeat 2 40 0 286 133 0 0 chr3 106374715 106374760 -111662398 - MADE1 DNA Mariner 0 80 36 24 0 0 0 chr3 106375507 106375531 -111661627 + AT_rich Low_complexity Low_complexity 1 24 0 261 0 0 0 chr3 106375644 106375673 -111661485 + (T)n Simple_repeat Simple_repeat 1 29 0 710 148 7 63 chr3 106377275 106377417 -111659741 + FLAM_C SINE Alu 1 134 -9 8471 70 1 9 chr3 106377532 106379446 -111657712 - L1PA7 LINE L1 -4 6150 4236 1022 66 0 0 chr3 106379446 106379582 -111657576 - L1P LINE L1 -1682 4464 4329 2424 77 0 6 chr3 106379803 106380115 -111657043 - AluY SINE Alu -1 310 1 1798 162 11 0 chr3 106380458 106380736 -111656422 - AluJb SINE Alu -31 281 1 379 207 200 28 chr3 106380747 106380892 -111656266 - MIR SINE MIR -74 188 19 1951 175 49 14 chr3 106381798 106382164 -111654994 - MER45B DNA AcHobo -231 809 431 6365 29 1 1 chr3 106382164 106382919 -111654239 - L1PA4 LINE L1 -4 6151 5397 2141 219 9 31 chr3 106382920 106383372 -111653786 - MER45B DNA AcHobo -598 442 1 419 321 15 0 chr3 106383372 106383509 -111653649 + MIR SINE MIR 118 256 -6 24 32 0 0 chr3 106384185 106384216 -111652942 + AT_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chr3 106384246 106384278 -111652880 + AT_rich Low_complexity Low_complexity 1 32 0 328 290 226 18 chr3 106385098 106385315 -111651843 + MIR SINE MIR 1 262 0 2406 80 0 10 chr3 106385789 106386102 -111651056 - AluY SINE Alu -1 310 1 920 292 54 51 chr3 106386561 106387133 -111650025 - L1ME4a LINE L1 -188 5933 5360 203 0 37 0 chr3 106388176 106388203 -111648955 + (TA)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr3 106389022 106389044 -111648114 + AT_rich Low_complexity Low_complexity 1 22 0 1636 168 28 6 chr3 106391412 106391733 -111645425 + L1MA7 LINE L1 5942 6269 -22 300 269 120 48 chr3 106392209 106392376 -111644782 - L1ME4a LINE L1 -3 6118 5940 192 333 0 16 chr3 106393205 106393268 -111643890 + MIR SINE MIR 9 70 -192 2204 94 0 27 chr3 106393642 106393940 -111643218 - AluSq SINE Alu -23 290 1 855 168 16 94 chr3 106396609 106396800 -111640358 - MER5A DNA MER1_type -11 178 3 188 318 75 28 chr3 106396998 106397105 -111640053 - L2 LINE L2 -3 3269 3158 22 0 0 0 chr3 106398452 106398474 -111638684 + AT_rich Low_complexity Low_complexity 1 22 0 1552 197 0 25 chr3 106398735 106399014 -111638144 + AluJo SINE Alu 11 282 -30 2099 119 57 28 chr3 106399081 106399435 -111637723 - THE1B LTR MaLR 0 364 1 4502 167 31 49 chr3 106399569 106400680 -111636478 - L1MA9 LINE L1 -38 6274 5162 1760 146 6 53 chr3 106401216 106401539 -111635619 + AluJo SINE Alu 1 308 -4 798 223 4 118 chr3 106402448 106402686 -111634472 + MER20 DNA MER1_type 6 216 -3 2589 59 0 0 chr3 106403203 106403510 -111633648 - AluY SINE Alu -4 307 1 217 279 118 0 chr3 106405623 106405691 -111631467 - L2 LINE L2 -13 3259 3184 2155 113 3 0 chr3 106407254 106407547 -111629611 + AluSx SINE Alu 1 294 -18 188 338 53 45 chr3 106409027 106409160 -111627998 + MIR SINE MIR 20 153 -55 187 204 0 68 chr3 106410029 106410073 -111627085 + MIR3 SINE MIR 145 185 -23 432 247 31 10 chr3 106410639 106410736 -111626422 + MER5A DNA MER1_type 14 112 -77 1277 103 5 5 chr3 106410774 106410958 -111626200 - AluSq SINE Alu -6 307 124 548 213 0 0 chr3 106411544 106411713 -111625445 + C-rich Low_complexity Low_complexity 1 169 0 258 260 14 0 chr3 106411714 106411787 -111625371 + CT-rich Low_complexity Low_complexity 4 77 0 580 202 0 22 chr3 106411787 106411970 -111625188 + C-rich Low_complexity Low_complexity 1 179 0 213 163 0 0 chr3 106411997 106412046 -111625112 + C-rich Low_complexity Low_complexity 1 49 0 794 232 151 82 chr3 106417338 106417657 -111619501 - MER58B DNA MER1_type 0 341 1 1742 191 3 0 chr3 106418357 106418650 -111618508 + AluJb SINE Alu 1 294 -18 180 302 75 0 chr3 106418916 106418969 -111618189 - MIR SINE MIR -1 261 205 180 310 211 0 chr3 106422238 106422309 -111614849 - MIR3 SINE MIR -6 202 117 249 311 54 0 chr3 106422460 106422534 -111614624 - L3b LINE CR1 -135 1448 1371 2514 215 25 11 chr3 106423957 106424524 -111612634 - MER90 LTR ERV1 0 575 1 309 310 17 17 chr3 106426234 106426350 -111610808 + MER117 DNA MER1_type 80 195 -2 2225 115 0 3 chr3 106427948 106428243 -111608915 + AluSg SINE Alu 1 294 -16 180 0 0 0 chr3 106428802 106428822 -111608336 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1548 132 22 52 chr3 106428831 106429103 -111608055 - AluSx SINE Alu -46 266 3 187 324 0 40 chr3 106430671 106430745 -111606413 + MIR SINE MIR 132 202 -60 865 173 55 59 chr3 106431619 106431839 -111605319 + MER20 DNA MER1_type 1 219 0 185 262 48 0 chr3 106431949 106431991 -111605167 - L2 LINE L2 -9 3304 3261 2027 134 10 0 chr3 106433650 106433949 -111603209 + AluSx SINE Alu 1 302 -10 203 284 84 42 chr3 106434132 106434227 -111602931 - L2 LINE L2 -18 3295 3197 633 157 4 2 chr3 106434447 106434700 -111602458 + AluJo SINE Alu 1 298 -14 764 54 0 0 chr3 106436221 106436314 -111600844 + L1PA10 LINE L1 6042 6134 -34 24 0 0 0 chr3 106438526 106438550 -111598608 + AT_rich Low_complexity Low_complexity 1 24 0 384 190 26 0 chr3 106439558 106439630 -111597528 + CT-rich Low_complexity Low_complexity 1 79 -40 216 0 0 0 chr3 106439630 106439654 -111597504 + (CA)n Simple_repeat Simple_repeat 1 24 0 384 190 26 0 chr3 106439654 106439697 -111597461 + CT-rich Low_complexity Low_complexity 79 119 0 195 114 0 0 chr3 106439737 106439772 -111597386 + (CA)n Simple_repeat Simple_repeat 1 35 0 2158 121 0 19 chr3 106441252 106441567 -111595591 - AluSq SINE Alu -4 309 1 297 0 0 0 chr3 106441946 106441979 -111595179 + (A)n Simple_repeat Simple_repeat 1 33 0 186 43 0 0 chr3 106443038 106443061 -111594097 + (CCCCCG)n Simple_repeat Simple_repeat 4 26 0 23 33 0 0 chr3 106443247 106443277 -111593881 + AT_rich Low_complexity Low_complexity 1 30 0 2056 128 6 10 chr3 106445389 106445702 -111591456 - AluSx SINE Alu 0 312 1 895 214 0 22 chr3 106448998 106449176 -111587982 + AluJo SINE Alu 100 273 -39 234 239 0 0 chr3 106451868 106451914 -111585244 + CT-rich Low_complexity Low_complexity 6 51 0 681 214 14 7 chr3 106451961 106452106 -111585052 - MLT1E LTR MaLR -447 146 1 630 71 0 0 chr3 106453011 106453095 -111584063 + (TA)n Simple_repeat Simple_repeat 1 84 0 657 219 14 7 chr3 106453924 106454070 -111583088 - MER58C DNA MER1_type 0 215 69 1486 194 94 3 chr3 106456847 106457167 -111579991 - MLT1B LTR MaLR -14 376 28 2388 83 0 3 chr3 106461279 106461579 -111575579 + AluSg1 SINE Alu 2 300 -9 2356 94 7 0 chr3 106463202 106463509 -111573649 - AluSg SINE Alu -1 309 1 1073 214 65 87 chr3 106464031 106464347 -111572811 - L1 LINE L1 -1497 4649 4349 630 248 0 0 chr3 106464347 106464480 -111572678 + FLAM_C SINE Alu 1 133 0 1073 214 65 87 chr3 106464480 106464713 -111572445 - L1 LINE L1 -1797 4349 4112 1156 183 198 41 chr3 106464841 106465230 -111571928 - LTR7 LTR ERV1 0 450 1 2024 127 3 0 chr3 106465752 106466060 -111571098 + AluSg SINE Alu 1 309 -1 719 283 59 32 chr3 106466497 106466935 -111570223 - L1M4c LINE L1 -4647 1737 1288 2407 82 3 3 chr3 106467326 106467630 -111569528 + AluY SINE Alu 1 304 -7 967 201 36 10 chr3 106468415 106468609 -111568549 - MIR SINE MIR -62 200 2 4278 188 5 16 chr3 106471375 106472212 -111564946 - Tigger1 DNA MER2_type -1569 849 22 1365 162 7 14 chr3 106472408 106472686 -111564472 - L1P LINE L1 -1961 4185 3910 3337 200 32 0 chr3 106472866 106474063 -111563095 + L1PBa LINE L1 614 2028 -4835 1016 261 145 57 chr3 106474204 106474500 -111562658 + L1MEd LINE L1 504 772 -5357 2096 123 3 3 chr3 106474500 106474800 -111562358 + AluSx SINE Alu 1 300 -12 1016 261 145 57 chr3 106474800 106475516 -111561642 + L1MEd LINE L1 772 1614 -4515 1758 168 0 14 chr3 106476950 106477274 -111559884 + AluJo SINE Alu 1 320 0 330 326 62 43 chr3 106477299 106477667 -111559491 + L1MEd LINE L1 2187 2561 -3568 4082 170 14 30 chr3 106477744 106478513 -111558645 - MER52A LTR ERV1 0 1755 952 505 212 0 0 chr3 106478511 106478610 -111558548 - MER52A LTR ERV1 -1012 743 645 * 576 235 79 62 chr3 106478603 106478925 -111558233 - MER52A LTR ERV1 -784 494 56 24 32 0 0 chr3 106479806 106479837 -111557321 + AT_rich Low_complexity Low_complexity 1 31 0 332 346 38 0 chr3 106481493 106481626 -111555532 + MIR SINE MIR 51 188 -74 337 250 11 22 chr3 106483622 106483714 -111553444 + L1MC5 LINE L1 7820 7910 -51 1194 132 11 0 chr3 106485721 106485895 -111551263 - FRAM SINE Alu 0 176 1 250 276 138 43 chr3 106486066 106486182 -111550976 - L2 LINE L2 -8 3264 3138 2106 81 0 21 chr3 106486398 106486682 -111550476 + AluY SINE Alu 1 278 -33 346 365 114 33 chr3 106486870 106487416 -111549742 - L2 LINE L2 -575 2739 2150 380 263 82 17 chr3 106487627 106487882 -111549276 - MER46C DNA MER2_type 0 338 25 35 41 0 0 chr3 106488585 106488634 -111548524 + AT_rich Low_complexity Low_complexity 1 49 0 23 0 0 0 chr3 106489591 106489614 -111547544 + AT_rich Low_complexity Low_complexity 1 23 0 194 328 101 25 chr3 106492607 106492726 -111544432 - L2 LINE L2 -6 3307 3180 590 283 30 0 chr3 106492798 106492964 -111544194 - MIR SINE MIR -89 173 3 254 221 0 58 chr3 106494813 106494899 -111542259 + CT-rich Low_complexity Low_complexity 1 81 0 435 123 0 62 chr3 106495647 106495728 -111541430 - Charlie1 DNA MER1_type -257 2504 2429 395 248 255 0 chr3 106495706 106495867 -111541291 - MER46C DNA MER2_type -136 202 1 * 222 171 0 0 chr3 106497301 106497342 -111539816 + (TGGA)n Simple_repeat Simple_repeat 3 43 0 27 29 0 0 chr3 106500156 106500190 -111536968 + AT_rich Low_complexity Low_complexity 1 34 0 247 175 0 0 chr3 106501126 106501166 -111535992 - LTR16A LTR ERVL -410 40 1 945 217 19 79 chr3 106501178 106501428 -111535730 + L1M4 LINE L1 3793 4009 -2137 271 132 0 0 chr3 106501428 106501466 -111535692 + tRNA-Ser-TCC tRNA tRNA 1 38 -47 945 217 19 79 chr3 106501466 106501632 -111535526 + L1M4 LINE L1 4009 4184 -1962 22 0 0 0 chr3 106502095 106502117 -111535041 + AT_rich Low_complexity Low_complexity 1 22 0 4445 127 5 37 chr3 106502117 106502879 -111534279 - L1PB3 LINE L1 -2 6152 5415 843 194 0 81 chr3 106503308 106503519 -111533639 + MER58A DNA MER1_type 2 195 -29 474 257 71 0 chr3 106503521 106503634 -111533524 - MER58B DNA MER1_type -2 339 219 261 224 0 0 chr3 106503703 106503752 -111533406 - L2 LINE L2 -5 3267 3219 581 253 81 25 chr3 106505191 106505389 -111531769 + MIR SINE MIR 12 220 -42 195 329 13 0 chr3 106505936 106506015 -111531143 + MIR SINE MIR 183 262 0 22 56 0 0 chr3 106506212 106506248 -111530910 + AT_rich Low_complexity Low_complexity 1 36 0 252 0 0 0 chr3 106507546 106507574 -111529584 + (GA)n Simple_repeat Simple_repeat 2 29 0 503 331 17 29 chr3 106507781 106507953 -111529205 - MER91A DNA MER1_type -26 170 1 948 183 53 0 chr3 106508258 106508427 -111528731 + MER2 DNA MER2_type 1 178 -167 364 172 0 16 chr3 106508489 106508553 -111528605 + MER2 DNA MER2_type 283 345 0 21 0 0 0 chr3 106508710 106508731 -111528427 + AT_rich Low_complexity Low_complexity 1 21 0 387 326 35 7 chr3 106509626 106509770 -111527388 + L2 LINE L2 3165 3312 -1 235 263 26 40 chr3 106511707 106511783 -111525375 + L2 LINE L2 3239 3313 0 21 36 0 0 chr3 106512101 106512129 -111525029 + AT_rich Low_complexity Low_complexity 1 28 0 307 221 43 121 chr3 106512626 106512766 -111524392 - MLT1H LTR MaLR 0 549 421 254 185 62 62 chr3 106512945 106513026 -111524132 - MLT1H LTR MaLR -375 174 94 2771 209 82 31 chr3 106513101 106513998 -111523160 - L1ME1 LINE L1 -43 6192 5260 2079 129 7 7 chr3 106514074 106514384 -111522774 - AluSx SINE Alu -2 310 1 3120 255 82 15 chr3 106514388 106515967 -111521191 - L1ME1 LINE L1 -4108 2288 560 2522 56 0 7 chr3 106518793 106519099 -111518059 + AluY SINE Alu 1 304 -7 226 324 88 15 chr3 106519379 106519515 -111517643 - MIR SINE MIR 0 262 117 1252 129 110 5 chr3 106519942 106520151 -111517007 + AluJb SINE Alu 1 231 -81 304 328 80 77 chr3 106522794 106523169 -111513989 - L2 LINE L2 -84 3188 2813 2243 118 0 6 chr3 106523691 106524004 -111513154 - AluSq SINE Alu -2 311 1 1465 147 54 0 chr3 106526042 106526300 -111510858 + L1PA13 LINE L1 5891 6162 -1 223 284 54 0 chr3 106526503 106526577 -111510581 + MIR3 SINE MIR 129 206 -2 468 181 123 157 chr3 106528788 106529038 -111508120 - MIR SINE MIR -26 236 17 1542 239 110 19 chr3 106529468 106530134 -111507024 - HAL1 LINE L1 -693 1814 1089 1223 107 0 0 chr3 106530781 106530940 -111506218 - AluSp SINE Alu -154 159 1 292 314 86 7 chr3 106530984 106531124 -111506034 + MIR SINE MIR 112 262 0 233 317 114 14 chr3 106531884 106532052 -111505106 - MER5B DNA MER1_type -1 177 7 1519 155 57 26 chr3 106533612 106533876 -111503282 + AluJo SINE Alu 24 295 -17 413 297 224 0 chr3 106535115 106535334 -111501824 - L2 LINE L2 -357 2957 2690 268 284 25 12 chr3 106540764 106540845 -111496313 + MIR SINE MIR 62 143 -65 261 273 107 50 chr3 106540834 106540955 -111496203 + MER5B DNA MER1_type 47 174 -4 * 1180 171 42 5 chr3 106541216 106541432 -111495726 - MER58A DNA MER1_type 0 224 1 27 29 0 0 chr3 106542079 106542113 -111495045 + AT_rich Low_complexity Low_complexity 1 34 0 221 289 30 118 chr3 106543976 106544111 -111493047 - MIR SINE MIR -139 123 1 3240 170 50 14 chr3 106544388 106544970 -111492188 + MER6A DNA MER2_type 1 603 -2 406 296 126 26 chr3 106545059 106545174 -111491984 + L1MC4a LINE L1 5812 5914 -1894 5924 138 81 11 chr3 106545174 106546322 -111490836 - Tigger3b DNA MER2_type -2 1229 2 406 296 126 26 chr3 106546322 106546436 -111490722 + L1MC4a LINE L1 5914 6064 -1744 954 210 57 14 chr3 106546611 106547017 -111490141 + MLT1F LTR MaLR 48 559 -8 441 169 0 34 chr3 106547233 106547322 -111489836 + AluJb SINE Alu 213 298 -14 360 285 63 48 chr3 106547333 106547540 -111489618 + L1MC5 LINE L1 7673 7882 -79 578 172 203 76 chr3 106548115 106548406 -111488752 + MER33 DNA MER1_type 1 324 0 1740 145 9 72 chr3 106549082 106549414 -111487744 - AluJb SINE Alu -1 311 1 197 296 19 83 chr3 106549820 106549928 -111487230 - MIR3 SINE MIR -21 187 87 22 80 0 0 chr3 106551125 106551175 -111485983 + AT_rich Low_complexity Low_complexity 1 50 0 1011 198 58 10 chr3 106551543 106551750 -111485408 + MIR SINE MIR 2 218 -44 211 306 69 0 chr3 106551841 106551913 -111485245 + L2 LINE L2 3199 3275 -38 290 259 122 8 chr3 106552485 106552616 -111484542 + L1ME LINE L1 1 146 -5924 983 267 79 78 chr3 106552715 106552955 -111484203 + L1ME LINE L1 315 553 -5425 2231 114 64 52 chr3 106552955 106553393 -111483765 + MER65A LTR ERV1 1 443 -2 983 267 79 78 chr3 106553393 106554008 -111483150 + L1ME LINE L1 553 1032 -4946 714 253 0 35 chr3 106554242 106554440 -111482718 + L1ME3 LINE L1 5972 6162 0 459 219 73 36 chr3 106555262 106555332 -111481826 + L1MC5 LINE L1 7717 7783 -178 1557 165 68 0 chr3 106555332 106555581 -111481577 + AluSx SINE Alu 1 266 -46 459 219 73 36 chr3 106555581 106555702 -111481456 + L1MC5 LINE L1 7783 7915 -46 249 366 120 7 chr3 106558033 106558175 -111478983 + MER5A DNA MER1_type 27 184 -5 48 32 0 0 chr3 106558808 106558870 -111478288 + AT_rich Low_complexity Low_complexity 1 62 0 1591 188 11 7 chr3 106559046 106559333 -111477825 + AluJb SINE Alu 1 288 -24 33 0 0 0 chr3 106559333 106559366 -111477792 + AT_rich Low_complexity Low_complexity 1 33 0 239 292 99 45 chr3 106559404 106559647 -111477511 + MARNA DNA Mariner 177 432 -154 2666 172 39 72 chr3 106559916 106560527 -111476631 + MER90 LTR ERV1 8 598 -16 2157 191 30 83 chr3 106560685 106561252 -111475906 + MLT2B3 LTR ERVL 8 544 -10 2034 99 7 56 chr3 106561379 106561682 -111475476 - AluSg SINE Alu -22 288 1 2191 95 0 10 chr3 106561976 106562271 -111474887 + AluY SINE Alu 1 292 -19 548 282 125 10 chr3 106562271 106562664 -111474494 - L1MEd LINE L1 -2163 3966 3529 535 314 226 6 chr3 106562673 106563199 -111473959 - L1MEd LINE L1 -2663 3466 2825 421 308 169 23 chr3 106563420 106563768 -111473390 - L1MEd LINE L1 -3610 2519 2121 1274 273 144 49 chr3 106564297 106565013 -111472145 - L1MEd LINE L1 -4515 1614 744 2096 123 3 3 chr3 106565013 106565313 -111471845 - AluSx SINE Alu -12 300 1 1274 273 144 49 chr3 106565313 106565760 -111471398 - L1MEd LINE L1 -5385 744 341 427 246 86 27 chr3 106565844 106566031 -111471127 - L1MEd LINE L1 -5906 213 16 21 0 0 0 chr3 106566077 106566098 -111471060 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr3 106566227 106566252 -111470906 + AT_rich Low_complexity Low_complexity 1 25 0 726 160 152 44 chr3 106566482 106566742 -111470416 + MER1B DNA MER1_type 1 339 0 22 70 0 0 chr3 106567211 106567254 -111469904 + AT_rich Low_complexity Low_complexity 1 43 0 2309 111 3 0 chr3 106568324 106568630 -111468528 + AluSx SINE Alu 1 307 -5 250 282 115 0 chr3 106568692 106568770 -111468388 + MER58 DNA MER1_type 2 88 -2332 1765 164 6 13 chr3 106568953 106569265 -111467893 + AluJo SINE Alu 1 310 -2 6193 150 103 11 chr3 106569276 106571242 -111465916 + L1MA5A LINE L1 4127 6296 -1 613 236 111 0 chr3 106571308 106571452 -111465706 + FRAM SINE Alu 1 160 -16 742 304 37 0 chr3 106571704 106571954 -111465204 + MLT1J1 LTR MaLR 63 306 -140 458 214 100 7 chr3 106572344 106572484 -111464674 - MER103 DNA DNA -11 155 3 2178 98 7 7 chr3 106572666 106572961 -111464197 - AluSx SINE Alu -17 295 1 709 194 50 7 chr3 106573118 106573257 -111463901 + FRAM SINE Alu 1 145 -31 21 0 0 0 chr3 106573257 106573278 -111463880 + AT_rich Low_complexity Low_complexity 1 21 0 1461 262 158 13 chr3 106573748 106574275 -111462883 + L2 LINE L2 2283 2885 -429 653 256 182 16 chr3 106574310 106574568 -111462590 + L2 LINE L2 2997 3297 -16 336 286 97 89 chr3 106574871 106575242 -111461916 - L3 LINE CR1 -294 1283 910 196 216 0 0 chr3 106575290 106575327 -111461831 - L2 LINE L2 -8 3305 3269 186 143 0 57 chr3 106575514 106575549 -111461609 + L2 LINE L2 3246 3278 -35 2254 84 0 7 chr3 106575780 106576077 -111461081 + AluSg SINE Alu 1 295 -15 286 325 121 13 chr3 106576756 106576913 -111460245 + MIR SINE MIR 71 244 -18 198 129 0 57 chr3 106577265 106577335 -111459823 + (TCCC)n Simple_repeat Simple_repeat 2 67 0 199 231 115 51 chr3 106578076 106578154 -111459004 - L2 LINE L2 0 3313 3231 1781 136 106 12 chr3 106578320 106578651 -111458507 - MER31A LTR ERV1 -123 362 1 2758 93 54 2 chr3 106578723 106579133 -111458025 - MER57B LTR ERV1 -3 431 1 2126 113 54 59 chr3 106581345 106581735 -111455423 + MLT1B LTR MaLR 3 390 0 1162 137 0 0 chr3 106581818 106581986 -111455172 + AluSg/x SINE Alu 132 299 -13 1897 136 6 40 chr3 106581990 106582313 -111454845 + AluJb SINE Alu 1 312 0 328 264 42 42 chr3 106582502 106582646 -111454512 + L1ME2 LINE L1 5400 5543 -2265 3005 182 33 0 chr3 106582857 106583401 -111453757 + MER68 LTR ERV1 1 562 0 280 279 51 76 chr3 106583723 106583881 -111453277 - MIR3 SINE MIR -6 202 49 2583 188 33 48 chr3 106584285 106584412 -111452746 + L1ME2 LINE L1 5523 5650 -514 733 144 64 24 chr3 106584412 106584537 -111452621 - FLAM_C SINE Alu -3 130 1 2583 188 33 48 chr3 106584537 106585052 -111452106 + L1ME2 LINE L1 5650 6155 -9 180 77 0 0 chr3 106585155 106585181 -111451977 + (A)n Simple_repeat Simple_repeat 1 26 0 2156 116 0 0 chr3 106585181 106585491 -111451667 + AluSg SINE Alu 1 310 0 21 36 0 0 chr3 106586107 106586135 -111451023 + AT_rich Low_complexity Low_complexity 1 28 0 337 356 40 7 chr3 106586805 106586954 -111450204 + L1ME LINE L1 5642 5795 -326 4640 149 26 14 chr3 106587137 106587467 -111449691 - L1MA9 LINE L1 -177 6135 5810 531 0 0 0 chr3 106587467 106587526 -111449632 + (TG)n Simple_repeat Simple_repeat 1 59 0 4640 149 26 14 chr3 106587526 106588040 -111449118 - L1MA9 LINE L1 -502 5810 5281 244 296 69 57 chr3 106589238 106589485 -111447673 + LTR33A LTR ERVL 254 503 -20 238 358 78 11 chr3 106589501 106589680 -111447478 + MLT1K LTR MaLR 240 430 -158 2866 172 78 63 chr3 106589708 106590482 -111446676 - LTR1 LTR ERV1 0 785 1 420 296 15 0 chr3 106590505 106590637 -111446521 + MER94 DNA DNA 1 134 0 236 230 27 0 chr3 106590647 106590721 -111446437 + MLT1K LTR MaLR 485 560 -28 358 359 70 0 chr3 106592674 106592830 -111444328 + MIR3 SINE MIR 42 208 0 570 314 21 5 chr3 106593064 106593252 -111443906 - MIR SINE MIR -70 192 2 605 226 80 10 chr3 106593345 106593544 -111443614 + L1MD3 LINE L1 7783 7995 0 465 298 29 14 chr3 106594268 106594435 -111442723 - MER5A DNA MER1_type -6 183 2 290 334 44 9 chr3 106594505 106594615 -111442543 - MIR SINE MIR -90 118 3 196 315 0 0 chr3 106595286 106595340 -111441818 - L2 LINE L2 -84 3229 3176 406 197 124 18 chr3 106595502 106595666 -111441492 + L1MD3 LINE L1 6178 7995 0 42103 38 3 1 chr3 106595688 106601822 -111435336 + L1PA4 LINE L1 3 6152 -3 310 303 48 97 chr3 106601935 106602391 -111434767 + HAL1b LINE L1 496 929 -419 1779 168 0 14 chr3 106602633 106602957 -111434201 + AluJo SINE Alu 1 320 0 330 326 62 43 chr3 106602982 106603350 -111433808 + L1M4 LINE L1 2204 2578 -3568 4073 153 12 28 chr3 106603427 106604168 -111432990 - MER52A LTR ERV1 0 1755 1027 546 141 0 0 chr3 106604194 106604293 -111432865 - MER52A LTR ERV1 -1012 743 645 * 580 212 49 49 chr3 106604286 106604470 -111432688 - MER52A LTR ERV1 -1516 239 56 281 143 0 52 chr3 106605110 106605187 -111431971 - MER52A LTR ERV1 -1682 73 1 2319 118 0 0 chr3 106605604 106605909 -111431249 + AluSx SINE Alu 6 310 -2 1797 250 84 15 chr3 106606285 106607340 -111429818 + L1MEc LINE L1 1760 2842 -3373 402 165 175 0 chr3 106607639 106607742 -111429416 + L1M1 LINE L1 13 133 -7432 * 14314 154 39 8 chr3 106607739 106608380 -111428778 + L1M1 LINE L1 1099 1719 -5846 183 42 0 0 chr3 106608380 106608404 -111428754 + (GA)n Simple_repeat Simple_repeat 2 25 0 14314 154 39 8 chr3 106608404 106608751 -111428407 + L1M1 LINE L1 1719 2054 -5511 198 0 0 0 chr3 106608751 106608773 -111428385 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 14314 154 39 8 chr3 106608773 106611635 -111425523 + L1M1 LINE L1 2054 4826 -2739 207 0 0 0 chr3 106611635 106611658 -111425500 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 14314 154 39 8 chr3 106611658 106612332 -111424826 + L1M1 LINE L1 4826 5478 -2087 2325 101 0 0 chr3 106612332 106612628 -111424530 + AluY SINE Alu 1 296 -15 14314 154 39 8 chr3 106612628 106613060 -111424098 + L1M1 LINE L1 5478 6214 -1351 17257 84 12 1 chr3 106613080 106613451 -111423707 + L1PA7 LINE L1 2909 3274 -2880 2211 110 17 0 chr3 106613451 106613750 -111423408 + AluSg SINE Alu 1 304 -6 17257 84 12 1 chr3 106613750 106616643 -111420515 + L1PA7 LINE L1 3274 6152 -2 4342 95 25 31 chr3 106616643 106617156 -111420002 + L1MA3 LINE L1 5593 6107 -198 2241 104 0 10 chr3 106617156 106617454 -111419704 - AluSx SINE Alu -17 295 1 4342 95 25 31 chr3 106617454 106617640 -111419518 + L1MA3 LINE L1 6107 6293 -12 2191 40 8 145 chr3 106617644 106617996 -111419162 - AluY SINE Alu -7 304 1 484 266 72 58 chr3 106618692 106618899 -111418259 + MLT1H LTR MaLR 114 323 -226 2421 147 19 21 chr3 106618962 106619390 -111417768 + L1P3 LINE L1 10 436 -6025 4729 79 6 0 chr3 106619390 106620020 -111417138 + L1PA7 LINE L1 5521 6154 0 1192 88 6 41 chr3 106620020 106620103 -111417055 + AluSg/x SINE Alu 131 206 -103 8264 51 12 0 chr3 106620103 106621060 -111416098 + LTR5 LTR ERVK 1 969 0 1192 88 6 41 chr3 106621060 106621146 -111416012 + AluSg/x SINE Alu 206 294 -15 280 221 29 15 chr3 106621212 106621280 -111415878 + MLT1F1 LTR MaLR 470 550 -17 325 224 9 52 chr3 106626176 106626231 -111410927 - Charlie8 DNA MER1_type -2236 181 132 2369 93 3 0 chr3 106626231 106626531 -111410627 - AluSp SINE Alu -12 301 1 325 224 9 52 chr3 106626531 106626591 -111410567 - Charlie8 DNA MER1_type -2285 132 71 1648 182 19 19 chr3 106626597 106626905 -111410253 + AluJb SINE Alu 1 308 -4 269 186 17 17 chr3 106627111 106627170 -111409988 + MER2 DNA MER2_type 287 345 0 2411 59 0 26 chr3 106627737 106628042 -111409116 - AluY SINE Alu -14 297 1 223 22 0 109 chr3 106628110 106628156 -111409002 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 1343 220 200 74 chr3 106628241 106628841 -111408317 - L2 LINE L2 0 3313 2526 336 23 0 0 chr3 106628841 106628884 -111408274 - MADE1 DNA Mariner -37 43 1 1343 220 200 74 chr3 106628884 106629164 -111407994 - L2 LINE L2 -787 2526 2283 241 269 30 90 chr3 106630759 106630893 -111406265 - MIR SINE MIR -24 238 113 226 307 67 67 chr3 106631816 106631966 -111405192 + L2 LINE L2 3117 3266 -6 25 31 0 0 chr3 106632363 106632395 -111404763 + AT_rich Low_complexity Low_complexity 1 32 0 310 200 27 13 chr3 106632617 106632692 -111404466 + MLT1F LTR MaLR 2 77 -465 861 184 179 8 chr3 106632748 106632982 -111404176 - ORSL DNA AcHobo 0 275 2 1636 195 36 9 chr3 106632987 106633321 -111403837 + MER61A LTR ERV1 1 343 0 346 209 188 32 chr3 106633442 106633617 -111403541 + MLT1H1 LTR MaLR 329 531 -24 320 99 56 0 chr3 106634393 106634464 -111402694 + (TG)n Simple_repeat Simple_repeat 2 76 0 310 219 0 0 chr3 106635171 106635235 -111401923 - Tigger5 DNA MER2_type -1 2322 2259 * 420 181 0 0 chr3 106635234 106635306 -111401852 + Tigger5 DNA MER2_type 2250 2321 -2 431 158 13 0 chr3 106635306 106635382 -111401776 - Tigger5 DNA MER2_type -2246 77 1 779 165 0 0 chr3 106635510 106635631 -111401527 - FLAM_C SINE Alu -20 123 3 264 257 115 49 chr3 106635892 106636075 -111401083 + L2 LINE L2 3116 3310 -3 425 182 182 7 chr3 106636129 106636272 -111400886 + L1MC4 LINE L1 6818 6985 -1057 1105 252 74 16 chr3 106636300 106636732 -111400426 + L1MC4a LINE L1 7053 7509 -299 25 31 0 0 chr3 106637009 106637041 -111400117 + AT_rich Low_complexity Low_complexity 1 32 0 204 238 0 0 chr3 106637235 106637277 -111399881 + MIR SINE MIR 104 145 -63 599 279 17 17 chr3 106637740 106637912 -111399246 + MER8 DNA MER2_type 1 172 -67 270 188 78 16 chr3 106637953 106638017 -111399141 - Tigger2 DNA MER2_type -2649 69 2 23 86 0 0 chr3 106638711 106638769 -111398389 + AT_rich Low_complexity Low_complexity 1 58 0 2401 88 3 0 chr3 106640012 106640320 -111396838 - AluSg SINE Alu -1 309 1 1093 185 50 63 chr3 106642367 106642605 -111394553 + AluJb SINE Alu 1 235 -77 226 222 32 0 chr3 106645369 106645432 -111391726 + MER67C LTR ERV1 1 65 -645 3279 115 27 56 chr3 106645510 106646099 -111391059 + LTR24B LTR ERV1 3 574 -2 2136 143 0 0 chr3 106646376 106646676 -111390482 + AluSx SINE Alu 1 300 -12 323 271 64 36 chr3 106647854 106647994 -111389164 + L1ME LINE L1 5632 5775 -346 378 61 0 0 chr3 106648130 106648179 -111388979 + (CA)n Simple_repeat Simple_repeat 2 50 0 253 245 71 49 chr3 106648498 106648640 -111388518 + MER61B LTR ERV1 11 139 -286 2205 190 146 66 chr3 106648651 106649335 -111387823 + LTR28 LTR ERV1 119 1006 -14 185 91 0 30 chr3 106649926 106649959 -111387199 + (CAT)n Simple_repeat Simple_repeat 2 33 0 970 169 0 48 chr3 106650961 106651127 -111386031 + AluSg/x SINE Alu 135 292 -20 28 0 0 0 chr3 106651319 106651347 -111385811 + AT_rich Low_complexity Low_complexity 1 28 0 810 241 155 4 chr3 106651761 106652039 -111385119 + MER5C DNA MER1_type 5 324 0 339 25 0 0 chr3 106652149 106652189 -111384969 + (TG)n Simple_repeat Simple_repeat 2 41 0 360 278 196 26 chr3 106652297 106652515 -111384643 - MIR SINE MIR -3 259 11 533 291 45 35 chr3 106652645 106652844 -111384314 + MIR SINE MIR 62 262 0 256 291 164 0 chr3 106652852 106652962 -111384196 + MIR SINE MIR 129 256 -6 1857 139 13 26 chr3 106653361 106653664 -111383494 + AluSq SINE Alu 1 299 -14 45 50 0 30 chr3 106653938 106654037 -111383121 + AT_rich Low_complexity Low_complexity 1 96 0 205 29 59 0 chr3 106655153 106655187 -111381971 + (TATAG)n Simple_repeat Simple_repeat 5 40 0 312 73 0 0 chr3 106655293 106655334 -111381824 + MSTB LTR MaLR 386 426 0 22 35 0 0 chr3 106656506 106656535 -111380623 + AT_rich Low_complexity Low_complexity 1 29 0 329 62 21 0 chr3 106657865 106657913 -111379245 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 2011 127 38 0 chr3 106658525 106658816 -111378342 + AluSx SINE Alu 1 302 -10 477 271 7 26 chr3 106658823 106658978 -111378180 + L1ME LINE L1 303 454 -5918 725 267 26 30 chr3 106659173 106659494 -111377664 + L1ME LINE L1 1181 1477 -4907 3821 220 80 46 chr3 106659505 106660387 -111376771 + L1ME LINE L1 3760 4611 -1789 2246 110 7 0 chr3 106660387 106660679 -111376479 - AluSg SINE Alu -16 294 1 3821 220 80 46 chr3 106660679 106660879 -111376279 + L1ME LINE L1 4611 4803 -1597 12977 107 20 3 chr3 106660879 106663639 -111373519 + L1PA8 LINE L1 3356 6163 -9 3821 220 80 46 chr3 106663639 106664119 -111373039 + L1ME LINE L1 4803 5401 -999 1797 141 42 45 chr3 106664119 106664431 -111372727 + AluSx SINE Alu 1 311 -1 3821 220 80 46 chr3 106664431 106664750 -111372408 + L1ME LINE L1 5401 5708 -692 885 207 11 35 chr3 106664738 106664999 -111372159 + L1M4 LINE L1 4784 5038 -1108 * 1400 171 61 0 chr3 106665003 106665249 -111371909 + MER1B DNA MER1_type 1 261 -78 6738 135 10 12 chr3 106665250 106666375 -111370783 - Tigger1 DNA MER2_type -1275 1143 22 352 350 68 11 chr3 106666378 106666555 -111370603 - HAL1 LINE L1 -748 1742 1556 11438 30 0 0 chr3 106666571 106668020 -111369138 - L1PA4 LINE L1 -1961 4185 2737 9541 39 7 1 chr3 106668020 106669956 -111367202 + L1PA4 LINE L1 4214 6154 -1 1057 287 141 70 chr3 106670003 106670337 -111366821 - L1MEd LINE L1 -1045 1445 1136 1612 166 10 36 chr3 106670337 106670645 -111366513 - AluJo SINE Alu -11 301 2 1057 287 141 70 chr3 106670645 106671360 -111365798 - L1MEd LINE L1 -1354 1136 253 199 260 110 27 chr3 106671601 106671674 -111365484 + L2 LINE L2 3187 3265 -7 297 273 187 14 chr3 106671937 106672076 -111365082 - MIR3 SINE MIR -31 177 15 644 285 95 45 chr3 106673077 106673298 -111363860 - MIR SINE MIR -1 261 30 2243 105 3 0 chr3 106673987 106674283 -111362875 + AluSx SINE Alu 1 297 -15 219 69 0 0 chr3 106675296 106675325 -111361833 + (GAGTG)n Simple_repeat Simple_repeat 1 29 0 854 67 0 8 chr3 106675817 106675936 -111361222 + (GGAA)n Simple_repeat Simple_repeat 3 120 0 184 281 11 101 chr3 106676554 106676643 -111360515 + L2 LINE L2 3186 3266 -6 256 206 16 16 chr3 106676793 106676856 -111360302 + (TG)n Simple_repeat Simple_repeat 2 64 0 1990 178 26 8 chr3 106678009 106678392 -111358766 + MLT1B LTR MaLR 1 390 0 1998 153 3 19 chr3 106678759 106679126 -111358032 - MER47A DNA MER2_type 0 366 6 29 84 0 0 chr3 106679606 106679677 -111357481 + AT_rich Low_complexity Low_complexity 1 71 0 194 382 44 15 chr3 106679688 106679824 -111357334 - MIR SINE MIR -6 256 117 453 247 26 13 chr3 106679849 106680003 -111357155 + MER103 DNA DNA 1 156 -10 423 196 161 0 chr3 106680560 106680672 -111356486 - L2 LINE L2 0 3313 3184 280 287 138 0 chr3 106680666 106680753 -111356405 + MIR SINE MIR 43 141 -67 * 2168 92 4 0 chr3 106680903 106681321 -111355837 + AluSx SINE Alu 1 419 0 258 32 0 0 chr3 106681321 106681352 -111355806 + (CAGG)n Simple_repeat Simple_repeat 4 34 0 246 254 90 30 chr3 106682149 106682283 -111354875 + L1MC4 LINE L1 6559 6700 -1342 47 33 0 0 chr3 106682296 106682357 -111354801 + AT_rich Low_complexity Low_complexity 1 61 0 1151 215 93 12 chr3 106682377 106682721 -111354437 + L1MC4 LINE L1 6640 7011 -1031 32 67 0 0 chr3 106682722 106682782 -111354376 + AT_rich Low_complexity Low_complexity 1 60 0 532 184 20 0 chr3 106682850 106682948 -111354210 + MER5A DNA MER1_type 89 188 -1 491 245 54 91 chr3 106684345 106684719 -111352439 - MLT1G1 LTR MaLR -1 589 199 4785 30 0 0 chr3 106684719 106685277 -111351881 - LTR6B LTR ERV1 0 558 1 491 245 54 91 chr3 106685277 106685338 -111351820 - MLT1G1 LTR MaLR -391 199 137 936 72 0 7 chr3 106685338 106685476 -111351682 + L1MA5 LINE L1 5693 5829 -471 259 304 43 9 chr3 106685483 106685598 -111351560 + L1P5 LINE L1 439 557 -7024 13662 187 62 2 chr3 106685643 106690396 -111346762 + L1P5 LINE L1 728 5916 -1673 417 20 0 0 chr3 106690396 106690446 -111346712 + (TAAAA)n Simple_repeat Simple_repeat 3 52 0 13662 187 62 2 chr3 106690446 106691550 -111345608 + L1P5 LINE L1 5916 6952 -637 1106 185 9 0 chr3 106691547 106691763 -111345395 + L1PB1 LINE L1 4755 4972 -1174 * 4132 98 6 54 chr3 106691741 106692403 -111344755 + L1PB1 LINE L1 5514 6143 -8 2688 159 8 8 chr3 106692642 106693126 -111344032 + L1MA4 LINE L1 5812 6295 -5 518 142 21 4 chr3 106693209 106693321 -111343837 + MLT2D LTR ERVL 1 111 -286 417 297 77 50 chr3 106693620 106693842 -111343316 + MLT1J2 LTR MaLR 73 300 -150 1766 153 17 7 chr3 106693937 106694231 -111342927 - AluSx SINE Alu -15 297 1 755 194 54 158 chr3 106694237 106694290 -111342868 + MLT2C2 LTR ERVL 118 175 -289 2286 146 44 5 chr3 106694290 106694700 -111342458 - MSTB LTR MaLR 0 426 1 755 194 54 158 chr3 106694700 106694723 -111342435 + MLT2C2 LTR ERVL 175 199 -265 1037 171 153 51 chr3 106694723 106694997 -111342161 - AluJo SINE Alu 0 302 1 755 194 54 158 chr3 106694997 106695306 -111341852 + MLT2C2 LTR ERVL 199 464 0 2435 171 13 27 chr3 106695778 106696252 -111340906 - MLT1C LTR MaLR 0 467 1 238 255 76 83 chr3 106696798 106696955 -111340203 + MIR SINE MIR 13 168 -94 1969 144 0 12 chr3 106697909 106698248 -111338910 + L1MA4 LINE L1 5945 6279 -21 26 30 0 0 chr3 106698256 106698289 -111338869 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr3 106698378 106698404 -111338754 + AT_rich Low_complexity Low_complexity 1 26 0 214 211 0 18 chr3 106698419 106698476 -111338682 + A-rich Low_complexity Low_complexity 4 59 0 1065 267 93 48 chr3 106698831 106699624 -111337534 - L2 LINE L2 -4 3309 2493 1518 136 12 39 chr3 106700081 106700339 -111336819 + AluJb SINE Alu 55 305 -7 334 266 42 35 chr3 106700536 106700679 -111336479 + L1MC/D LINE L1 5400 5543 -2265 29 84 0 0 chr3 106700869 106700940 -111336218 + AT_rich Low_complexity Low_complexity 1 71 0 195 382 44 15 chr3 106700951 106701087 -111336071 - MIR SINE MIR -6 256 117 453 250 28 14 chr3 106701112 106701256 -111335902 + MER103 DNA DNA 1 146 -20 12860 153 36 10 chr3 106701733 106704614 -111332544 + L1M1 LINE L1 2123 4930 -2635 207 0 0 0 chr3 106704614 106704637 -111332521 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 12860 153 36 10 chr3 106704637 106705311 -111331847 + L1M1 LINE L1 4930 5794 -1771 2285 104 0 0 chr3 106705311 106705608 -111331550 + AluY SINE Alu 1 297 -14 12860 153 36 10 chr3 106705608 106706040 -111331118 + L1M1 LINE L1 5794 6214 -1351 17659 79 7 1 chr3 106706060 106706431 -111330727 + L1PA4 LINE L1 2909 3276 -2879 2178 113 17 0 chr3 106706431 106706731 -111330427 + AluSg SINE Alu 1 305 -5 17659 79 7 1 chr3 106706731 106709628 -111327530 + L1PA4 LINE L1 3276 6154 -1 237 293 96 88 chr3 106709762 106710009 -111327149 - L1MEd LINE L1 -4896 1223 980 1582 169 10 36 chr3 106710009 106710317 -111326841 - AluJo SINE Alu -11 301 2 237 293 96 88 chr3 106710317 106711017 -111326141 - L1MEd LINE L1 -5139 980 268 196 260 110 27 chr3 106711273 106711346 -111325812 + L2 LINE L2 3187 3265 -7 291 273 187 14 chr3 106711609 106711748 -111325410 - MIR3 SINE MIR -31 177 15 648 285 95 45 chr3 106712749 106712970 -111324188 - MIR SINE MIR -1 261 30 2193 108 3 0 chr3 106713659 106713955 -111323203 + AluSx SINE Alu 1 297 -15 219 69 0 0 chr3 106714968 106714997 -111322161 + (GAGTG)n Simple_repeat Simple_repeat 1 29 0 839 61 0 9 chr3 106715489 106715604 -111321554 + (GGAA)n Simple_repeat Simple_repeat 3 116 0 272 191 16 16 chr3 106716461 106716524 -111320634 + (TG)n Simple_repeat Simple_repeat 2 64 0 4112 148 27 18 chr3 106817598 106818303 -111218855 + MER50 LTR ERV1 1 711 -23 1462 181 19 13 chr3 106818693 106819002 -111218156 + LTR13 LTR ERVK 696 1006 -1 3836 147 14 9 chr3 106819058 106819719 -111217439 - LTR49-int LTR ERV1 -393 5938 5275 601 202 9 0 chr3 106819823 106819937 -111217221 - L1PA15-16 LINE L1 -2272 4577 4463 * 1959 236 52 56 chr3 106819935 106820698 -111216460 + L1 LINE L1 3007 3766 -2380 3234 199 21 11 chr3 106820698 106821405 -111215753 - L1PA15-16 LINE L1 -3979 2870 2157 2056 226 26 37 chr3 106821700 106822073 -111215085 - MER76 LTR ERV -3 685 318 1834 122 193 11 chr3 106822073 106822435 -111214723 + MSTA LTR MaLR 1 428 0 2056 226 26 37 chr3 106822435 106822602 -111214556 - MER76 LTR ERV -370 318 151 214 28 28 28 chr3 106822707 106822743 -111214415 + (TTCCC)n Simple_repeat Simple_repeat 2 37 0 1457 164 65 27 chr3 106822757 106823050 -111214108 - AluJo SINE Alu 0 312 9 369 219 133 0 chr3 106823789 106823894 -111213264 + L1M4 LINE L1 2295 2413 -3733 22 35 0 0 chr3 106824432 106824461 -111212697 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 106825940 106825962 -111211196 + AT_rich Low_complexity Low_complexity 1 22 0 256 162 14 27 chr3 106826191 106826265 -111210893 + L1MA7 LINE L1 6218 6290 -1 395 138 0 0 chr3 106826545 106826603 -111210555 + AluS SINE Alu 1 58 -245 443 182 11 0 chr3 106826705 106826793 -111210365 - AluJ/FRAM SINE Alu -6 306 218 2082 112 0 33 chr3 106827176 106827479 -111209679 - AluSx SINE Alu -16 296 4 221 319 77 11 chr3 106827652 106827743 -111209415 + L2 LINE L2 3174 3270 -2 382 279 0 0 chr3 106828449 106828528 -111208630 - FRAM/FAM SINE Alu -90 76 1 387 56 0 0 chr3 106828531 106828585 -111208573 + (CA)n Simple_repeat Simple_repeat 2 55 0 1396 139 29 0 chr3 106828593 106828801 -111208357 - AluSg/x SINE Alu -14 298 85 544 231 29 0 chr3 106829384 106829488 -111207670 + FLAM_A SINE Alu 1 107 -35 349 321 104 27 chr3 106829810 106830031 -111207127 + L1MEd LINE L1 1390 1627 -4903 276 270 259 0 chr3 106830042 106830216 -111206942 + HAL1 LINE L1 1391 1609 -898 304 292 72 51 chr3 106830275 106830470 -111206688 + L1MEd LINE L1 2434 2632 -3908 253 237 40 0 chr3 106830624 106830700 -111206458 + L1MEd LINE L1 2796 2874 -3666 2160 115 7 0 chr3 106830709 106831014 -111206144 + AluSx SINE Alu 1 307 -5 5442 118 71 113 chr3 106831291 106831495 -111205663 + Tigger3b DNA MER2_type 1 212 -2816 2049 136 3 7 chr3 106831495 106831805 -111205353 + AluSx SINE Alu 1 309 -3 2327 82 0 7 chr3 106831807 106832100 -111205058 + AluY SINE Alu 1 291 -20 5442 118 71 113 chr3 106832100 106833176 -111203982 + Tigger3b DNA MER2_type 213 1230 -1 2148 126 7 7 chr3 106833366 106833667 -111203491 - AluSx SINE Alu -11 301 1 1400 76 74 71 chr3 106833667 106833844 -111203314 + L1PB3 LINE L1 5581 5742 -412 2331 94 3 0 chr3 106833844 106834143 -111203015 + AluSp SINE Alu 1 300 -13 1400 76 74 71 chr3 106834143 106834250 -111202908 + L1PB3 LINE L1 5742 5847 -307 252 259 111 0 chr3 106834350 106834431 -111202727 + FLAM_C SINE Alu 27 116 -17 1748 184 0 0 chr3 106834454 106834736 -111202422 - AluSx SINE Alu -30 282 1 388 278 0 10 chr3 106837027 106837124 -111200034 - MIR3 SINE MIR -15 193 98 846 216 149 0 chr3 106837652 106837833 -111199325 + MER58A DNA MER1_type 2 209 -15 246 319 168 0 chr3 106837912 106838025 -111199133 - L2 LINE L2 -5 3267 3136 375 161 89 54 chr3 106838239 106838351 -111198807 + MER103 DNA DNA 30 145 -21 1748 158 37 3 chr3 106838364 106838661 -111198497 - AluSx SINE Alu -5 307 1 442 299 33 37 chr3 106838918 106839111 -111198047 - MIR SINE MIR -50 212 21 40 0 0 0 chr3 106840409 106840449 -111196709 + AT_rich Low_complexity Low_complexity 1 40 0 302 246 43 0 chr3 106841377 106841446 -111195712 + MIR SINE MIR 111 182 -80 1964 135 16 13 chr3 106841531 106841835 -111195323 - AluSx SINE Alu -7 305 1 1771 170 3 7 chr3 106841980 106842274 -111194884 + AluJb SINE Alu 1 293 -19 1438 198 0 15 chr3 106842288 106842556 -111194602 - AluJo SINE Alu -48 264 1 2384 57 0 3 chr3 106842857 106843169 -111193989 - AluY SINE Alu 0 311 1 2427 75 7 0 chr3 106843622 106843929 -111193229 - AluSg SINE Alu -1 309 1 960 202 15 0 chr3 106845128 106845326 -111191832 + L1MB7 LINE L1 4957 5157 -989 1111 145 23 6 chr3 106845358 106845530 -111191628 + AluJb SINE Alu 130 304 -8 4920 133 31 74 chr3 106845540 106846067 -111191091 + L1MB7 LINE L1 5175 5633 -551 492 183 258 0 chr3 106846067 106846160 -111190998 + FLAM_C SINE Alu 2 118 -15 4920 133 31 74 chr3 106846160 106846690 -111190468 + L1MB7 LINE L1 5633 6184 0 1966 139 36 3 chr3 106847524 106847827 -111189331 - MER7A DNA MER2_type -35 311 1 22 35 0 0 chr3 106848745 106848774 -111188384 + AT_rich Low_complexity Low_complexity 1 29 0 767 126 31 91 chr3 106849976 106850225 -111186933 + MER1B DNA MER1_type 35 339 0 2182 112 10 7 chr3 106850333 106850637 -111186521 + AluSx SINE Alu 1 305 -7 207 159 0 58 chr3 106851185 106851254 -111185904 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 338 261 31 54 chr3 106851422 106851552 -111185606 + L1ME LINE L1 5696 5822 -299 2266 113 0 0 chr3 106852101 106852402 -111184756 + AluSq SINE Alu 1 301 -12 1897 152 10 3 chr3 106853027 106853329 -111183829 + AluSx SINE Alu 1 304 -8 362 336 79 31 chr3 106854277 106854506 -111182652 - MIR SINE MIR -12 250 11 1855 153 30 7 chr3 106854668 106854963 -111182195 - AluSx SINE Alu -10 302 1 197 271 0 0 chr3 106855938 106855986 -111181172 - MIR SINE MIR 0 262 215 909 134 28 21 chr3 106857198 106857340 -111179818 + FAM SINE Alu 23 165 -20 2304 77 3 14 chr3 106858477 106858774 -111178384 + AluY SINE Alu 1 294 -17 1460 194 173 32 chr3 106859521 106859954 -111177204 + MLT1D LTR MaLR 3 496 -9 1218 217 160 80 chr3 106860742 106861166 -111175992 - LTR40b LTR ERVL 0 462 5 1766 114 110 0 chr3 106861311 106861574 -111175584 - AluSx SINE Alu -20 292 1 1051 110 0 0 chr3 106863817 106863953 -111173205 + AluSq/x SINE Alu 1 136 -177 2200 120 7 7 chr3 106863953 106864261 -111172897 + AluSx SINE Alu 1 308 -4 24 53 0 0 chr3 106864561 106864599 -111172559 + AT_rich Low_complexity Low_complexity 1 38 0 474 148 114 75 chr3 106864723 106864871 -111172287 + L1ME2 LINE L1 5704 5871 -307 569 255 122 23 chr3 106864990 106865253 -111171905 + L1ME2 LINE L1 5873 6161 -3 509 159 83 83 chr3 106865269 106865414 -111171744 + Charlie1 DNA MER1_type 95 239 -2522 812 239 85 0 chr3 106865473 106865661 -111171497 - MER63A DNA MER1_type 0 210 7 533 214 117 0 chr3 106865706 106865809 -111171349 - FLAM_A SINE Alu -18 115 1 228 275 100 25 chr3 106867261 106867341 -111169817 + MIR SINE MIR 64 149 -113 2176 111 3 10 chr3 106867823 106868129 -111169029 + AluSx SINE Alu 5 308 -4 6727 22 4 3 chr3 106869656 106870674 -111166484 - L1PA3 LINE L1 -534 5621 4601 4214 37 0 0 chr3 106870672 106871161 -111165997 + L1PA3 LINE L1 5638 6126 -29 * 1056 190 68 0 chr3 106871171 106871376 -111165782 + MER20 DNA MER1_type 1 219 0 499 229 73 58 chr3 106871747 106871949 -111165209 + L1ME3 LINE L1 5962 6170 0 1916 152 13 3 chr3 106872484 106872787 -111164371 + AluJo SINE Alu 1 306 -6 3181 114 51 47 chr3 106873424 106873708 -111163450 + MER41E LTR ERV1 1 289 -223 2304 95 0 3 chr3 106873708 106874003 -111163155 + AluSx SINE Alu 5 298 -14 3181 114 51 47 chr3 106874003 106874228 -111162930 + MER41E LTR ERV1 289 512 0 1350 143 19 0 chr3 106874252 106874462 -111162696 + AluJo SINE Alu 87 300 -12 2241 99 0 0 chr3 106874500 106874814 -111162344 + AluSq SINE Alu 1 314 0 281 293 7 73 chr3 106875087 106875237 -111161921 - MIR3 SINE MIR -32 176 37 2207 101 7 13 chr3 106876637 106876945 -111160213 + AluSx SINE Alu 1 306 -6 1768 124 0 0 chr3 106877007 106877256 -111159902 + AluSx SINE Alu 60 308 -4 312 232 71 24 chr3 106877259 106877427 -111159731 + L1M4 LINE L1 4389 4564 -1582 1486 251 118 50 chr3 106877480 106878134 -111159024 + L1ME LINE L1 31 728 -5342 2819 253 58 37 chr3 106878212 106879837 -111157321 + L1ME LINE L1 760 2389 -3691 344 59 0 39 chr3 106879838 106879889 -111157269 - Alu SINE Alu -9 292 244 436 208 0 107 chr3 106880042 106880109 -111157049 + L1M4 LINE L1 4549 4593 -1553 2342 87 7 0 chr3 106880109 106880398 -111156760 + AluY SINE Alu 1 291 -20 436 208 0 107 chr3 106880398 106880479 -111156679 + L1M4 LINE L1 4593 4681 -1465 310 155 17 0 chr3 106880826 106880884 -111156274 - LTR54 LTR ERV1 -50 460 402 1735 184 20 3 chr3 106881413 106881717 -111155441 + AluJb SINE Alu 3 311 -1 249 184 61 0 chr3 106881743 106881792 -111155366 - AluYa5 SINE Alu -119 182 131 1017 172 30 40 chr3 106882755 106882953 -111154205 + MER20 DNA MER1_type 4 199 -20 1492 273 136 7 chr3 106883124 106883542 -111153616 + MER45C DNA AcHobo 482 953 0 434 201 25 130 chr3 106883542 106883696 -111153462 + LTR41 LTR ERVL 553 722 -51 1832 156 0 27 chr3 106883696 106883997 -111153161 - AluJo SINE Alu -19 293 1 434 201 25 130 chr3 106883997 106884026 -111153132 + LTR41 LTR ERVL 722 711 -62 2199 89 4 4 chr3 106884026 106884334 -111152824 + AluSx SINE Alu 2 309 0 434 201 25 130 chr3 106884334 106884386 -111152772 + LTR41 LTR ERVL 710 766 -7 7500 78 8 5 chr3 106884487 106885453 -111151705 + LTR5 LTR ERVK 1 969 0 1114 143 9 43 chr3 106885846 106886056 -111151102 - AluJo SINE Alu -109 203 1 217 270 99 54 chr3 106886448 106886559 -111150599 - MIR SINE MIR -108 154 39 326 300 0 0 chr3 106887070 106887170 -111149988 + C-rich Low_complexity Low_complexity 1 100 0 251 293 61 75 chr3 106888050 106888262 -111148896 - L2 LINE L2 -2118 1196 988 447 95 0 0 chr3 106888623 106888686 -111148472 - L1PA12 LINE L1 -249 5919 5857 * 3282 155 37 11 chr3 106888684 106888770 -111148388 + L1P LINE L1 4486 4568 -1578 7901 61 19 1 chr3 106888770 106889722 -111147436 - LTR5 LTR ERVK 0 969 1 3282 155 37 11 chr3 106889722 106890204 -111146954 + L1P LINE L1 4568 5069 -1077 230 228 36 96 chr3 106890199 106890233 -111146925 + L1ME4a LINE L1 5893 5927 -194 * 244 237 0 0 chr3 106890233 106890292 -111146866 + (TA)n Simple_repeat Simple_repeat 1 59 0 230 228 36 96 chr3 106890292 106890366 -111146792 + L1ME4a LINE L1 5927 6049 -72 221 325 80 9 chr3 106890473 106890642 -111146516 - MIR SINE MIR -14 248 28 1943 161 75 11 chr3 106890681 106891053 -111146105 - L1MB2 LINE L1 0 6171 5776 209 213 38 12 chr3 106891084 106891164 -111145994 + (TA)n Simple_repeat Simple_repeat 1 82 0 1221 214 51 19 chr3 106891181 106891514 -111145644 - L1P5 LINE L1 -380 5776 5427 1625 173 43 4 chr3 106891575 106891852 -111145306 - AluJb SINE Alu -24 288 1 1443 156 30 60 chr3 106892008 106892342 -111144816 + L1MB7 LINE L1 5714 6037 -147 2799 13 0 0 chr3 106894663 106894968 -111142190 - AluYb8 SINE Alu -13 305 1 1490 158 0 5 chr3 106895362 106895583 -111141575 + AluSx SINE Alu 1 220 -92 395 182 0 11 chr3 106895588 106895676 -111141482 + A-rich Low_complexity Low_complexity 2 88 0 285 352 67 17 chr3 106895679 106895751 -111141407 + MIR SINE MIR 75 142 -120 4166 148 22 25 chr3 106895751 106896483 -111140675 - MER44D DNA MER2_type 0 605 4 285 352 67 17 chr3 106896483 106896589 -111140569 + MIR SINE MIR 142 262 0 1615 155 38 19 chr3 106897058 106897500 -111139658 + L1M3 LINE L1 5175 5623 -560 9048 113 22 19 chr3 106897620 106897863 -111139295 - Tigger1 DNA MER2_type -87 2331 2090 2298 89 0 0 chr3 106897863 106898154 -111139004 - AluSg SINE Alu -18 292 2 9048 113 22 19 chr3 106898154 106898764 -111138394 - Tigger1 DNA MER2_type -328 2090 1484 1841 177 3 6 chr3 106898764 106899075 -111138083 - AluJb SINE Alu -2 310 1 9048 113 22 19 chr3 106899075 106899433 -111137725 - Tigger1 DNA MER2_type -934 1484 1111 1933 107 4 0 chr3 106899433 106899685 -111137473 + AluSq SINE Alu 50 302 -11 9048 113 22 19 chr3 106899685 106899953 -111137205 - Tigger1 DNA MER2_type -1307 1111 845 798 137 12 19 chr3 106899954 106900115 -111137043 + CT-rich Low_complexity Low_complexity 2 161 0 1615 185 14 0 chr3 106900129 106900415 -111136743 - AluJb SINE Alu -7 305 16 1288 187 13 4 chr3 106900515 106900740 -111136418 - AluJb SINE Alu -83 229 3 5585 127 7 0 chr3 106900740 106901589 -111135569 - Tigger1 DNA MER2_type -1563 855 1 21 0 0 0 chr3 106901599 106901620 -111135538 + AT_rich Low_complexity Low_complexity 1 21 0 1950 167 26 36 chr3 106904479 106904750 -111132408 - L1MB3 LINE L1 -39 6144 5877 2439 51 0 35 chr3 106904750 106905066 -111132092 - AluY SINE Alu -6 305 1 1950 167 26 36 chr3 106905066 106905214 -111131944 - L1MB3 LINE L1 -306 5877 5729 2314 83 3 0 chr3 106905325 106905625 -111131533 + AluSp SINE Alu 1 301 -12 1741 148 7 7 chr3 106906101 106906391 -111130767 + AluSx SINE Alu 1 290 -22 2382 157 38 2 chr3 106907721 106908147 -111129011 - MLT2A2 LTR ERVL -12 441 1 5024 135 19 6 chr3 106908147 106909020 -111128138 - HERVL-A2 LTR ERVL 0 5654 4770 1692 166 3 10 chr3 106909342 106909644 -111127514 - AluSx SINE Alu -8 304 5 214 300 100 25 chr3 106910127 106910207 -111126951 - MIR SINE MIR -113 149 64 887 232 91 3 chr3 106910959 106911244 -111125914 + LTR16B LTR ERVL 1 310 -154 186 189 0 0 chr3 106911248 106911285 -111125873 + CT-rich Low_complexity Low_complexity 2 38 0 207 0 0 0 chr3 106911320 106911343 -111125815 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 196 393 0 0 chr3 106912211 106912267 -111124891 + L2 LINE L2 3201 3256 -16 212 320 0 0 chr3 106912652 106912702 -111124456 - L2 LINE L2 -19 3294 3245 1524 56 0 0 chr3 106912721 106912899 -111124259 + AluY SINE Alu 1 178 -133 769 221 149 0 chr3 106913014 106913195 -111123963 + MER58A DNA MER1_type 2 209 -15 243 319 168 0 chr3 106913274 106913387 -111123771 - L2 LINE L2 -5 3267 3136 339 146 146 10 chr3 106913601 106913697 -111123461 + MER103 DNA DNA 30 138 -28 1004 213 65 31 chr3 106913728 106914019 -111123139 - AluSx SINE Alu -8 304 4 641 143 0 0 chr3 106914263 106914361 -111122797 + MSTA LTR MaLR 331 428 0 232 321 31 42 chr3 106914603 106914792 -111122366 - LTR16A LTR ERVL -303 161 1 2049 128 3 3 chr3 106915433 106915730 -111121428 - AluSx SINE Alu -15 297 1 227 276 98 24 chr3 106915786 106915909 -111121249 + L2 LINE L2 3147 3278 -35 1464 185 22 66 chr3 106916333 106916652 -111120506 + AluJb SINE Alu 1 305 -7 204 195 0 24 chr3 106917339 106917380 -111119778 + MIR3 SINE MIR 133 172 -36 344 139 63 38 chr3 106918153 106918232 -111118926 + MER63 DNA MER1_type 3 709 -353 1395 152 9 149 chr3 106918482 106918831 -111118327 - AluJb SINE Alu -12 300 1 371 255 179 34 chr3 106918977 106919306 -111117852 + L1MC4 LINE L1 7559 8042 0 685 222 7 0 chr3 106919566 106919701 -111117457 - AluJb SINE Alu -174 138 3 359 237 59 30 chr3 106919701 106919836 -111117322 - L2 LINE L2 -1003 2311 2173 1918 130 7 0 chr3 106919968 106920245 -111116913 + AluSg SINE Alu 26 304 -6 394 212 61 20 chr3 106920424 106920523 -111116635 + MIR SINE MIR 49 151 -57 2145 158 177 6 chr3 106921268 106921743 -111115415 - MER21A LTR ERV1 0 931 376 1038 117 117 22 chr3 106921748 106921978 -111115180 - MER21A LTR ERV1 -667 264 13 278 261 116 0 chr3 106922265 106922334 -111114824 + MIR SINE MIR 33 109 -99 1554 180 126 17 chr3 106922504 106922990 -111114168 - L1ME LINE L1 -488 5678 5087 2154 100 7 0 chr3 106922990 106923271 -111113887 - AluSg SINE Alu -11 299 17 1554 180 126 17 chr3 106923271 106923568 -111113590 - L1ME LINE L1 -1079 5087 4824 5509 108 12 70 chr3 106923591 106924077 -111113081 - L1PB1 LINE L1 0 6151 5638 2254 112 0 0 chr3 106924077 106924371 -111112787 - AluSx SINE Alu -18 294 1 5509 108 12 70 chr3 106924371 106924767 -111112391 - L1PB1 LINE L1 -513 5638 5328 2765 64 0 6 chr3 106924767 106925126 -111112032 - L1PA5 LINE L1 -6 6148 5792 5509 108 12 70 chr3 106925126 106925440 -111111718 - L1PB1 LINE L1 -823 5328 4997 2308 138 98 141 chr3 106925725 106926118 -111111040 + L1MB7 LINE L1 5456 5803 -381 1912 156 0 0 chr3 106926118 106926400 -111110758 + AluSx SINE Alu 1 282 -30 2308 138 98 141 chr3 106926400 106926758 -111110400 + L1MB7 LINE L1 5803 6175 -9 187 262 0 0 chr3 106927099 106927141 -111110017 + MIR SINE MIR 101 142 -66 21 57 0 0 chr3 106928979 106929014 -111108144 + AT_rich Low_complexity Low_complexity 1 35 0 282 116 0 0 chr3 106929108 106929151 -111108007 + (TA)n Simple_repeat Simple_repeat 1 43 0 274 302 12 0 chr3 106929167 106929253 -111107905 + L2 LINE L2 3005 3091 -181 246 294 66 33 chr3 106930054 106930265 -111106893 + L1ME LINE L1 5602 5819 -302 40 0 0 36 chr3 106930271 106930286 -111106872 + AT_rich Low_complexity Low_complexity 1 15 -38 2195 78 18 3 chr3 106930286 106930570 -111106588 + AluY SINE Alu 1 288 -23 40 0 0 36 chr3 106930570 106930609 -111106549 + AT_rich Low_complexity Low_complexity 15 53 0 338 305 84 36 chr3 106931091 106931258 -111105900 + MIR3 SINE MIR 23 197 -11 188 254 68 17 chr3 106931225 106931284 -111105874 + MER5C DNA MER1_type 14 75 -249 * 24 0 0 0 chr3 106932126 106932150 -111105008 + AT_rich Low_complexity Low_complexity 1 24 0 416 271 63 68 chr3 106932587 106932951 -111104207 + L1MC4 LINE L1 7617 7980 -62 2421 70 3 0 chr3 106932951 106933251 -111103907 + AluSp SINE Alu 1 301 -12 416 271 63 68 chr3 106933251 106933314 -111103844 + L1MC4 LINE L1 7980 8042 0 2243 104 7 7 chr3 106933728 106934035 -111103123 + AluSx SINE Alu 3 309 -3 24 32 0 0 chr3 106934385 106934416 -111102742 + AT_rich Low_complexity Low_complexity 1 31 0 255 232 21 21 chr3 106934653 106934748 -111102410 + (TA)n Simple_repeat Simple_repeat 1 95 0 469 267 90 116 chr3 106935054 106935399 -111101759 + L1MC4a LINE L1 5555 5890 -1918 2037 122 38 0 chr3 106935580 106935868 -111101290 - AluSx SINE Alu -13 299 1 470 261 22 22 chr3 106936064 106936198 -111100960 + L2 LINE L2 2184 2317 -997 689 35 0 0 chr3 106936213 106936299 -111100859 - L1PA4 LINE L1 -3 6152 6067 196 278 19 0 chr3 106936299 106936353 -111100805 + L2 LINE L2 2311 2365 -949 559 238 34 20 chr3 106936870 106937017 -111100141 + MIR SINE MIR 81 229 -33 2462 87 3 0 chr3 106937217 106937527 -111099631 + AluSp SINE Alu 1 311 -2 1629 159 17 44 chr3 106937896 106938191 -111098967 - AluJo SINE Alu -25 287 1 2185 99 3 32 chr3 106938275 106938587 -111098571 + AluSc SINE Alu 2 304 -5 257 0 30 0 chr3 106939635 106939668 -111097490 + (TTA)n Simple_repeat Simple_repeat 2 35 0 919 94 0 0 chr3 106939690 106939807 -111097351 - AluY SINE Alu -194 117 1 25 31 0 0 chr3 106941059 106941091 -111096067 + AT_rich Low_complexity Low_complexity 1 32 0 1841 170 34 28 chr3 106942349 106942737 -111094421 + MLT1B LTR MaLR 1 390 0 2297 100 3 0 chr3 106942771 106943071 -111094087 + AluSg SINE Alu 2 302 -8 1236 135 0 5 chr3 106943476 106943661 -111093497 - AluSx SINE Alu -1 311 128 510 177 0 0 chr3 106943661 106943740 -111093418 - AluSx SINE Alu -233 79 1 340 235 139 32 chr3 106943902 106944183 -111092975 + L1ME4a LINE L1 5794 6104 -17 2444 54 0 7 chr3 106944187 106944485 -111092673 - AluY SINE Alu -15 296 1 458 257 124 19 chr3 106944693 106944950 -111092208 + L1ME LINE L1 5539 5822 -299 351 374 84 19 chr3 106945156 106945370 -111091788 - MIR SINE MIR -33 229 2 671 232 92 36 chr3 106948208 106948601 -111088557 + L1MC5 LINE L1 7121 7535 -426 1954 158 3 3 chr3 106948887 106949190 -111087968 - AluJb SINE Alu -9 303 1 21 0 0 0 chr3 106949282 106949303 -111087855 + AT_rich Low_complexity Low_complexity 1 21 0 2002 151 3 6 chr3 106949791 106950102 -111087056 + AluSx SINE Alu 1 310 -2 714 64 0 0 chr3 106951387 106951481 -111085677 - AluSg/x SINE Alu -11 301 208 354 289 138 29 chr3 106951490 106951801 -111085357 + L1MC4a LINE L1 5553 5897 -1911 22 35 0 0 chr3 106951848 106951877 -111085281 + AT_rich Low_complexity Low_complexity 1 29 0 1943 146 10 7 chr3 106951879 106952180 -111084978 + AluSx SINE Alu 1 302 -10 2123 77 0 4 chr3 106952868 106953140 -111084018 + AluSq SINE Alu 1 271 -42 198 0 0 0 chr3 106953140 106953162 -111083996 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 27 49 0 0 chr3 106953708 106953749 -111083409 + AT_rich Low_complexity Low_complexity 1 41 0 2521 56 0 7 chr3 106955800 106956102 -111081056 - AluY SINE Alu -11 300 1 385 282 0 19 chr3 106957197 106957300 -111079858 - MIR3 SINE MIR -11 197 97 332 306 45 9 chr3 106957774 106957885 -111079273 + MIR SINE MIR 69 183 -79 2381 97 0 0 chr3 106958119 106958417 -111078741 + AluSx SINE Alu 1 298 -14 268 308 47 9 chr3 106959471 106959578 -111077580 - MLT1J2 LTR MaLR -46 404 294 264 172 62 0 chr3 106959581 106959645 -111077513 - L1ME3A LINE L1 -12 6158 6091 1976 151 20 0 chr3 106960471 106960769 -111076389 + AluJo SINE Alu 1 304 -8 2691 45 0 0 chr3 106961131 106961440 -111075718 - AluY SINE Alu -2 309 1 212 320 0 0 chr3 106961459 106961509 -111075649 + L2 LINE L2 3245 3294 -19 196 216 0 0 chr3 106961476 106961513 -111075645 + MIR SINE MIR 217 253 -9 * 196 393 0 0 chr3 106961894 106961950 -111075208 - L2 LINE L2 -16 3256 3201 207 0 0 0 chr3 106962819 106962842 -111074316 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 186 189 0 0 chr3 106962877 106962914 -111074244 + GA-rich Low_complexity Low_complexity 2 38 0 915 226 88 3 chr3 106962918 106963201 -111073957 - LTR16B LTR ERVL -154 310 4 349 236 81 0 chr3 106963514 106963675 -111073483 + LTR16B LTR ERVL 289 462 -2 349 248 56 48 chr3 106963831 106963956 -111073202 + MIR3 SINE MIR 66 191 -17 212 229 143 38 chr3 106965539 106965644 -111071514 + MIR SINE MIR 19 134 -74 2187 101 28 0 chr3 106966925 106967211 -111069947 - AluSx SINE Alu -16 296 3 2285 108 0 7 chr3 106967828 106968135 -111069023 + AluSg SINE Alu 1 305 -5 1542 163 39 92 chr3 106970085 106970522 -111066636 - MLT2D LTR ERVL 0 414 1 516 170 19 9 chr3 106970680 106970786 -111066372 - MER20 DNA MER1_type 0 219 113 1058 170 0 0 chr3 106970880 106971045 -111066113 + FRAM SINE Alu 2 166 0 206 172 47 16 chr3 106971188 106971252 -111065906 + (TA)n Simple_repeat Simple_repeat 2 67 0 252 306 145 52 chr3 106971867 106972060 -111065098 + MIR SINE MIR 47 257 -5 3488 187 43 27 chr3 106972077 106972970 -111064188 + L1MC4a LINE L1 6902 7808 0 1955 160 144 3 chr3 106973074 106973449 -111063709 + MSTA LTR MaLR 1 428 0 9714 119 18 33 chr3 106973451 106975054 -111062104 + MSTA-int LTR MaLR 3 1580 0 2016 141 138 21 chr3 106975055 106975438 -111061720 + MSTA LTR MaLR 1 428 0 265 205 154 43 chr3 106975484 106975601 -111061557 - MIR SINE MIR -54 208 79 1938 161 0 0 chr3 106976140 106976442 -111060716 - AluSx SINE Alu 0 302 1 773 173 0 8 chr3 106976451 106976578 -111060580 - FLAM_C SINE Alu -16 127 2 21 0 0 0 chr3 106976580 106976601 -111060557 + AT_rich Low_complexity Low_complexity 1 21 0 195 129 0 0 chr3 106976974 106977005 -111060153 + (TG)n Simple_repeat Simple_repeat 2 32 0 184 271 0 0 chr3 106978502 106978550 -111058608 - MIR3 SINE MIR -9 199 152 564 172 0 0 chr3 106978908 106978995 -111058163 - AluS SINE Alu -225 87 1 509 225 108 53 chr3 106979019 106979361 -111057797 + L1ME4a LINE L1 5628 5988 -133 27 29 0 0 chr3 106979722 106979756 -111057402 + AT_rich Low_complexity Low_complexity 1 34 0 796 269 56 4 chr3 106980248 106980482 -111056676 - MIR SINE MIR -3 259 14 383 270 82 13 chr3 106980836 106980995 -111056163 + MIR SINE MIR 87 256 -6 261 210 0 0 chr3 106983041 106983103 -111054055 + GA-rich Low_complexity Low_complexity 3 64 0 628 222 91 36 chr3 106983173 106983394 -111053764 - Charlie8 DNA MER1_type -2141 276 44 496 293 34 11 chr3 106985065 106985331 -111051827 - L1M4 LINE L1 -1123 5023 4752 300 154 0 0 chr3 106985363 106985415 -111051743 + (TA)n Simple_repeat Simple_repeat 1 52 0 310 318 18 50 chr3 106985452 106985672 -111051486 - L1M4 LINE L1 -1446 4700 4488 706 185 8 23 chr3 106985735 106985865 -111051293 - FLAM_C SINE Alu -4 129 2 444 228 53 18 chr3 106985934 106986048 -111051110 + L2 LINE L2 2643 2760 -554 * 1296 253 56 27 chr3 106986036 106986412 -111050746 + L2 LINE L2 2914 3300 -13 22 88 0 0 chr3 106986770 106986827 -111050331 + AT_rich Low_complexity Low_complexity 1 57 0 283 296 44 44 chr3 106986925 106987084 -111050074 - MIR SINE MIR -6 256 98 1728 147 0 34 chr3 106987231 106987523 -111049635 + AluJo SINE Alu 1 282 -30 573 268 55 12 chr3 106987608 106987772 -111049386 - MIR3 SINE MIR -5 203 33 718 352 53 4 chr3 106988228 106988753 -111048405 + L1ME3 LINE L1 5338 5829 -333 29 28 0 0 chr3 106988822 106988858 -111048300 + AT_rich Low_complexity Low_complexity 1 36 0 251 193 35 0 chr3 106988912 106988969 -111048189 + (CAATA)n Simple_repeat Simple_repeat 2 60 0 412 291 74 40 chr3 106989089 106989264 -111047894 - MER5A DNA MER1_type -7 182 2 21 36 0 0 chr3 106990540 106990568 -111046590 + AT_rich Low_complexity Low_complexity 1 28 0 1034 158 0 6 chr3 106990576 106990741 -111046417 + FRAM SINE Alu 1 163 -13 2223 117 0 3 chr3 106991288 106991587 -111045571 - AluSx SINE Alu -14 298 1 841 161 0 0 chr3 106991626 106991750 -111045408 - FLAM_C SINE Alu -16 127 4 262 290 47 20 chr3 106993570 106993705 -111043453 + MIR SINE MIR 30 166 -47 3203 259 139 72 chr3 106996168 106997224 -111039934 + HAL1 LINE L1 108 1092 -1415 1561 173 28 14 chr3 106997224 106997339 -111039819 + AluJo SINE Alu 1 113 -199 189 0 0 0 chr3 106997339 106997360 -111039798 + (CAA)n Simple_repeat Simple_repeat 1 21 0 2512 71 0 0 chr3 106997365 106997673 -111039485 + AluY SINE Alu 1 308 -3 2404 97 0 0 chr3 106997673 106997983 -111039175 + AluSg SINE Alu 1 310 0 1561 173 28 14 chr3 106997983 106998144 -111039014 + AluJo SINE Alu 115 288 -24 3203 259 139 72 chr3 106998144 106998790 -111038368 + HAL1 LINE L1 1092 1693 -814 207 0 0 0 chr3 106998790 106998813 -111038345 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 3203 259 139 72 chr3 106998813 106999251 -111037907 + HAL1 LINE L1 1693 2392 -115 1973 123 3 29 chr3 106999283 106999591 -111037567 - AluSx SINE Alu -12 300 1 22 0 0 0 chr3 106999629 106999651 -111037507 + AT_rich Low_complexity Low_complexity 1 22 0 686 251 101 19 chr3 106999748 106999955 -111037203 + L1ME2 LINE L1 5451 5674 -490 447 83 155 36 chr3 106999955 107000039 -111037119 + L1MA5A LINE L1 6204 6297 0 545 186 32 70 chr3 107000052 107000131 -111037027 + L1ME2 LINE L1 5660 5732 -432 2246 116 3 3 chr3 107000131 107000441 -111036717 + AluSx SINE Alu 3 312 0 545 186 32 70 chr3 107000441 107000517 -111036641 + L1ME2 LINE L1 5732 5809 -355 1862 174 90 14 chr3 107000517 107000874 -111036284 + MLT1B LTR MaLR 1 384 -6 1161 237 28 47 chr3 107000879 107001238 -111035920 + L1ME2 LINE L1 5803 6154 -10 504 264 132 14 chr3 107001416 107001636 -111035522 + MLT1B-int LTR MaLR 291 536 -835 266 291 126 26 chr3 107001818 107001969 -111035189 + MLT1B-int LTR MaLR 699 864 -507 590 274 53 95 chr3 107002177 107002535 -111034623 + MLT1B-int LTR MaLR 1023 1365 -6 1292 234 140 58 chr3 107002540 107003041 -111034117 + MLT1F LTR MaLR 1 542 0 249 239 193 0 chr3 107004477 107004565 -111032593 - L2 LINE L2 0 3313 3209 294 219 227 8 chr3 107004985 107005113 -111032045 + MIR SINE MIR 107 262 0 24 32 0 0 chr3 107005504 107005535 -111031623 + AT_rich Low_complexity Low_complexity 1 31 0 458 294 62 0 chr3 107005539 107005699 -111031459 - MIR SINE MIR -1 261 92 1843 169 3 7 chr3 107005900 107006201 -111030957 + AluJb SINE Alu 1 300 -12 481 93 67 0 chr3 107006221 107006296 -111030862 - MADE1 DNA Mariner 0 80 1 2144 142 0 6 chr3 107006709 107007020 -111030138 + AluJo SINE Alu 3 311 -1 407 310 63 30 chr3 107007381 107007649 -111029509 + L1ME4a LINE L1 5602 5878 -243 423 298 60 24 chr3 107007662 107007830 -111029328 - MIR SINE MIR -15 247 74 1842 213 95 47 chr3 107008318 107008812 -111028346 + MLT2B1 LTR ERVL 1 518 -2 2287 90 0 23 chr3 107008819 107009120 -111028038 - AluSx SINE Alu -18 294 1 3315 202 18 58 chr3 107009248 107009990 -111027168 + L1MDa LINE L1 18 729 -5811 2282 211 26 49 chr3 107009999 107010869 -111026289 + L1MDa LINE L1 2337 3182 -3358 1137 230 23 4 chr3 107010850 107011107 -111026051 + L1MDa LINE L1 4385 4646 -1894 * 443 120 133 0 chr3 107012278 107012353 -111024805 - AluSg/x SINE Alu -11 298 214 2093 138 3 0 chr3 107012425 107012721 -111024437 - AluSx SINE Alu -15 297 1 2339 89 0 13 chr3 107013006 107013320 -111023838 + AluSg SINE Alu 1 310 0 989 124 89 6 chr3 107013322 107013491 -111023667 + AluSc SINE Alu 127 309 0 379 338 87 60 chr3 107013659 107013925 -111023233 - L2 LINE L2 -18 3254 2982 23 0 0 0 chr3 107013933 107013956 -111023202 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 107014565 107014587 -111022571 + AT_rich Low_complexity Low_complexity 1 22 0 2329 89 0 0 chr3 107015527 107015818 -111021340 + AluSg SINE Alu 1 291 -19 2237 109 3 3 chr3 107016020 107016323 -111020835 + AluSx SINE Alu 1 303 -9 336 322 17 0 chr3 107016564 107016679 -111020479 - MIR3 SINE MIR -7 201 85 2332 82 10 0 chr3 107016920 107017213 -111019945 + AluSx SINE Alu 3 298 -14 180 0 0 0 chr3 107017653 107017673 -111019485 + (T)n Simple_repeat Simple_repeat 1 20 0 313 278 112 75 chr3 107018524 107018819 -111018339 + L1M2 LINE L1 946 1251 -5598 227 246 197 8 chr3 107021014 107021136 -111016022 + MIR SINE MIR 68 212 -50 1793 111 100 4 chr3 107021385 107021656 -111015502 - AluSq SINE Alu -16 297 1 264 291 163 43 chr3 107021656 107021797 -111015361 + MIR3 SINE MIR 46 203 -5 373 349 148 40 chr3 107021933 107022250 -111014908 + L2 LINE L2 1728 2009 -1305 1029 159 111 5 chr3 107022250 107022439 -111014719 + MER3 DNA MER1_type 1 209 0 373 349 148 40 chr3 107022439 107022709 -111014449 + L2 LINE L2 2009 2401 -913 2356 97 0 0 chr3 107022709 107023009 -111014149 - AluY SINE Alu -11 300 1 373 349 148 40 chr3 107023009 107023100 -111014058 + L2 LINE L2 2401 2481 -833 1339 217 23 16 chr3 107023315 107023619 -111013539 - MLT1A1 LTR MaLR -2 363 58 2278 112 0 0 chr3 107023921 107024216 -111012942 + AluSx SINE Alu 1 295 -17 234 226 57 0 chr3 107024264 107024317 -111012841 + L2 LINE L2 3182 3237 -76 488 181 43 0 chr3 107024340 107024434 -111012724 + MLT2B1 LTR ERVL 1 98 -422 2449 81 7 0 chr3 107024443 107024750 -111012408 - AluSq SINE Alu -4 309 1 4430 229 45 75 chr3 107024752 107026939 -111010219 - L1M1 LINE L1 -4148 2958 7 863 248 159 52 chr3 107026948 107027275 -111009883 + MLT2B1 LTR ERVL 81 442 -78 1288 101 12 0 chr3 107027280 107027449 -111009709 + AluSq SINE Alu 1 171 -142 330 26 0 0 chr3 107027460 107027471 -111009687 + (CA)n Simple_repeat Simple_repeat 1 50 0 330 26 0 0 chr3 107027471 107027510 -111009648 + (CA)n Simple_repeat Simple_repeat 2 40 0 556 101 76 0 chr3 107027524 107027603 -111009555 - AluSp/q SINE Alu -16 297 213 455 48 0 16 chr3 107027744 107027807 -111009351 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 2741 197 30 32 chr3 107027841 107028531 -111008627 + MLT1-int LTR MaLR 1 884 -487 405 237 21 0 chr3 107028590 107028683 -111008475 + MLT-int LTR MaLR 680 774 -961 2173 216 15 26 chr3 107028809 107029272 -111007886 + MLT1E1-int LTR MaLR 1270 1727 -8 1706 187 8 77 chr3 107029297 107029699 -111007459 - MLT1A2 LTR MaLR 0 467 1 2251 152 81 25 chr3 107029791 107030224 -111006934 - MSTB2 LTR MaLR 0 457 1 181 351 22 113 chr3 107030442 107030673 -111006485 + L2 LINE L2 3035 3244 -28 481 291 108 14 chr3 107031436 107031584 -111005574 + MER91A DNA MER1_type 14 175 -21 803 231 124 0 chr3 107031847 107032033 -111005125 - MLT1H1 LTR MaLR 0 555 347 * 1421 199 156 63 chr3 107032006 107032052 -111005106 + MLT1E1 LTR MaLR 96 136 -518 2305 98 3 0 chr3 107032052 107032349 -111004809 + AluSq SINE Alu 1 298 -15 1421 199 156 63 chr3 107032349 107032762 -111004396 + MLT1E1 LTR MaLR 136 652 -2 632 287 110 25 chr3 107032791 107033535 -111003623 + L1ME LINE L1 4962 5768 -396 230 263 23 105 chr3 107033532 107033703 -111003455 - L1ME3 LINE L1 -60 6102 5946 * 544 183 66 188 chr3 107033787 107034381 -111002777 - L1MC5 LINE L1 -591 7370 6612 432 0 0 0 chr3 107034387 107034435 -111002723 + (TG)n Simple_repeat Simple_repeat 1 48 0 26 64 0 0 chr3 107034452 107034499 -111002659 + AT_rich Low_complexity Low_complexity 1 47 0 1677 83 14 0 chr3 107034506 107034722 -111002436 - L1PA8 LINE L1 -3 6169 5951 367 290 25 139 chr3 107034917 107035152 -111002006 - HAL1b LINE L1 -894 454 289 2098 134 3 10 chr3 107035152 107035466 -111001692 - AluSx SINE Alu 0 312 1 367 290 25 139 chr3 107035466 107035661 -111001497 - HAL1b LINE L1 -1059 289 73 1950 114 40 34 chr3 107035847 107036145 -111001013 - AluSx SINE Alu -12 300 1 2843 224 180 2 chr3 107037096 107037282 -110999876 - L1MD2 LINE L1 -14 6345 6193 204 40 0 0 chr3 107037282 107037307 -110999851 + (TG)n Simple_repeat Simple_repeat 2 26 0 2843 224 180 2 chr3 107037307 107037955 -110999203 - L1MD2 LINE L1 -166 6193 5363 346 185 0 0 chr3 107037955 107038009 -110999149 - 5S rRNA rRNA -67 54 1 274 167 19 0 chr3 107038010 107038064 -110999094 - L1MD2 LINE L1 -988 5371 5317 204 67 0 0 chr3 107038080 107038110 -110999048 + (TTCC)n Simple_repeat Simple_repeat 1 30 0 1774 170 3 17 chr3 107038110 107038404 -110998754 - AluJb SINE Alu -22 290 1 1423 203 8 28 chr3 107038408 107038763 -110998395 - L1MD2 LINE L1 -824 5322 4975 832 198 6 12 chr3 107038769 107038931 -110998227 - AluJb SINE Alu -16 296 136 618 224 24 12 chr3 107038937 107039102 -110998056 - L1MD2 LINE L1 -1195 4951 4785 955 153 12 6 chr3 107039102 107039265 -110997893 - MLT2D LTR ERVL -249 165 2 624 270 106 48 chr3 107039275 107039568 -110997590 - L1ME4a LINE L1 -251 5870 5561 2021 99 0 0 chr3 107039970 107040233 -110996925 - AluY SINE Alu -11 300 38 243 0 0 0 chr3 107040591 107040618 -110996540 + (T)n Simple_repeat Simple_repeat 1 27 0 965 136 0 0 chr3 107041163 107041295 -110995863 + FLAM_C SINE Alu 1 132 -1 2397 194 38 38 chr3 107042030 107042587 -110994571 - MER68 LTR ERV1 -1 561 5 8168 213 102 40 chr3 107042595 107045349 -110991809 - HERVL68-D LTR ERVL -16 3021 13 460 293 18 65 chr3 107045172 107045401 -110991757 - MER68-int LTR ERV1 -3961 230 13 * 1045 183 59 27 chr3 107045414 107045633 -110991525 - MER68 LTR ERV1 -21 541 316 365 333 49 57 chr3 107045858 107046044 -110991114 + MIR SINE MIR 8 193 -69 2258 120 0 0 chr3 107046044 107046345 -110990813 + AluSg SINE Alu 6 306 -4 365 333 49 57 chr3 107046345 107046404 -110990754 + MIR SINE MIR 193 251 -11 1202 227 66 51 chr3 107046428 107046900 -110990258 + L1ME3 LINE L1 5669 6147 -15 2521 56 0 7 chr3 107049493 107049795 -110987363 - AluY SINE Alu -11 300 1 385 282 0 19 chr3 107050890 107050993 -110986165 - MIR3 SINE MIR -11 197 97 332 306 45 9 chr3 107051467 107051578 -110985580 + MIR SINE MIR 69 183 -79 2412 103 0 0 chr3 107051812 107052123 -110985035 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr3 107052275 107052297 -110984861 + AT_rich Low_complexity Low_complexity 1 22 0 248 238 53 164 chr3 107052471 107052660 -110984498 - MIR SINE MIR -70 192 25 2324 84 13 0 chr3 107052940 107053239 -110983919 + AluY SINE Alu 1 303 -8 216 0 0 0 chr3 107053244 107053268 -110983890 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1711 176 0 7 chr3 107053484 107053774 -110983384 + AluJb SINE Alu 13 300 -12 433 226 169 16 chr3 107053884 107054008 -110983150 - MIR SINE MIR -64 198 56 1508 206 118 31 chr3 107054110 107054308 -110982850 + Charlie1b DNA MER1_type 1 180 -2581 1941 97 108 0 chr3 107054308 107054587 -110982571 + AluSq SINE Alu 1 309 -4 1508 206 118 31 chr3 107054587 107054774 -110982384 + Charlie1b DNA MER1_type 180 349 -2412 2272 107 3 3 chr3 107054774 107055072 -110982086 - AluSx SINE Alu -14 298 1 1508 206 118 31 chr3 107055072 107055166 -110981992 + Charlie1b DNA MER1_type 349 523 0 220 272 35 9 chr3 107055338 107055452 -110981706 + (TA)n Simple_repeat Simple_repeat 1 117 0 857 101 0 0 chr3 107056499 107056618 -110980540 + L1PA15 LINE L1 6039 6157 -8 1989 134 3 16 chr3 107057128 107057441 -110979717 - AluJb SINE Alu -3 309 1 615 275 111 41 chr3 107057724 107057968 -110979190 - MIR SINE MIR 0 262 2 1763 136 19 41 chr3 107058098 107058414 -110978744 - AluJb SINE Alu -3 309 1 722 212 0 0 chr3 107058455 107058587 -110978571 + FLAM_A SINE Alu 1 132 -1 213 210 16 65 chr3 107058952 107059014 -110978144 - L2 LINE L2 -2 3270 3212 1247 173 0 5 chr3 107059058 107059260 -110977898 + AluSg/x SINE Alu 100 300 -12 2053 130 13 7 chr3 107059260 107059568 -110977590 + AluSx SINE Alu 1 310 -2 2088 143 7 0 chr3 107059581 107059874 -110977284 + AluSx SINE Alu 5 299 -13 376 274 29 0 chr3 107060296 107060398 -110976760 + MER5B DNA MER1_type 1 105 -73 3146 181 95 6 chr3 107060488 107061268 -110975890 + L1MB7 LINE L1 5336 6184 0 222 239 0 0 chr3 107061271 107061317 -110975841 - MER5B DNA MER1_type -129 49 4 760 247 12 6 chr3 107061402 107061568 -110975590 - MER5B DNA MER1_type -1 177 11 216 171 0 0 chr3 107061685 107061726 -110975432 + (CCA)n Simple_repeat Simple_repeat 2 42 0 39 0 0 0 chr3 107062026 107062065 -110975093 + AT_rich Low_complexity Low_complexity 1 39 0 559 287 39 25 chr3 107062073 107062359 -110974799 - L1MA9 LINE L1 -55 6257 5968 2240 105 3 3 chr3 107062988 107063282 -110973876 - AluSx SINE Alu -18 294 1 2094 125 7 3 chr3 107064048 107064343 -110972815 - AluSx SINE Alu -16 296 1 390 253 130 13 chr3 107065038 107065192 -110971966 + L1MC5 LINE L1 7482 7653 -308 2232 104 3 7 chr3 107065198 107065495 -110971663 - AluSq SINE Alu -17 296 1 425 236 12 61 chr3 107065543 107065708 -110971450 + L1MC5 LINE L1 7761 7917 -44 335 253 95 32 chr3 107065751 107065909 -110971249 + L1ME4a LINE L1 5951 6118 -3 22 0 0 0 chr3 107065920 107065942 -110971216 + AT_rich Low_complexity Low_complexity 1 22 0 837 105 8 0 chr3 107066124 107066248 -110970910 - AluSx SINE Alu -10 302 178 912 123 0 0 chr3 107066248 107066370 -110970788 - AluSx SINE Alu -190 122 1 504 232 48 8 chr3 107067051 107067176 -110969982 - MIR SINE MIR -28 234 105 364 293 12 0 chr3 107067282 107067364 -110969794 - MIR SINE MIR -172 90 8 248 284 0 49 chr3 107067396 107067477 -110969681 + MIR SINE MIR 178 254 -8 2267 98 0 3 chr3 107067689 107067986 -110969172 + AluSg1 SINE Alu 1 296 -13 719 160 24 97 chr3 107070307 107070513 -110966645 - L1MB7 LINE L1 -147 6037 5847 456 210 48 40 chr3 107072067 107072191 -110964967 - L2 LINE L2 -1 3312 3188 1422 158 60 15 chr3 107074156 107074421 -110962737 - AluJo SINE Alu -31 281 5 1004 109 18 6 chr3 107074541 107074706 -110962452 + MER46A DNA MER2_type 2 168 -68 181 343 30 15 chr3 107075300 107075367 -110961791 + L2 LINE L2 3205 3272 0 2077 129 3 0 chr3 107075745 107076039 -110961119 + AluSx SINE Alu 1 295 -17 26 0 0 0 chr3 107076837 107076863 -110960295 + AT_rich Low_complexity Low_complexity 1 26 0 264 160 0 20 chr3 107077114 107077164 -110959994 - L2 LINE L2 -3 3269 3221 515 294 59 18 chr3 107077314 107077484 -110959674 + MER5A DNA MER1_type 13 189 0 201 255 0 21 chr3 107077794 107077841 -110959317 + L2 LINE L2 3180 3225 -88 200 200 18 0 chr3 107077982 107078037 -110959121 + GA-rich Low_complexity Low_complexity 2 57 0 304 146 0 0 chr3 107078080 107078150 -110959008 + FLAM_C SINE Alu 70 139 0 262 340 39 89 chr3 107078779 107078861 -110958297 + L2 LINE L2 2865 2949 -323 3595 49 2 2 chr3 107078861 107079309 -110957849 + LTR7 LTR ERV1 1 448 -2 262 340 39 89 chr3 107079309 107079352 -110957806 + L2 LINE L2 2949 2993 -279 863 148 172 55 chr3 107079352 107079569 -110957589 + MER33 DNA MER1_type 1 262 -2323 2408 73 3 0 chr3 107079569 107079872 -110957286 - AluSx SINE Alu -8 304 1 863 148 172 55 chr3 107079872 107079944 -110957214 + MER33 DNA MER1_type 262 324 0 262 340 39 89 chr3 107079944 107080020 -110957138 + L2 LINE L2 2993 3057 -215 23 0 0 0 chr3 107081548 107081571 -110955587 + GC_rich Low_complexity Low_complexity 1 23 0 836 186 77 0 chr3 107081820 107082014 -110955144 - MER115 DNA AcHobo -5 688 480 832 260 0 0 chr3 107083028 107083205 -110953953 + MER45A DNA AcHobo 1 177 -1 1525 136 9 0 chr3 107083291 107083505 -110953653 - AluSg/x SINE Alu -6 304 89 26 0 0 0 chr3 107083516 107083542 -110953616 + AT_rich Low_complexity Low_complexity 1 26 0 233 237 0 79 chr3 107083873 107083949 -110953209 + L2 LINE L2 3239 3308 -5 2428 194 44 21 chr3 107084233 107084753 -110952405 - MLT1F LTR MaLR -10 532 1 32 81 0 0 chr3 107086230 107086304 -110950854 + AT_rich Low_complexity Low_complexity 1 74 0 256 249 42 143 chr3 107086442 107086659 -110950499 + L2 LINE L2 2848 3042 -230 188 294 0 20 chr3 107086982 107087033 -110950125 - L2 LINE L2 -9 3304 3255 544 299 11 60 chr3 107087121 107087305 -110949853 - MER5B DNA MER1_type -3 175 1 468 296 44 38 chr3 107087775 107087934 -110949224 + MIR3 SINE MIR 30 189 -19 2399 85 0 0 chr3 107089090 107089385 -110947773 + AluSq SINE Alu 1 295 -18 2026 114 38 7 chr3 107089857 107090146 -110947012 - AluSx SINE Alu -14 298 1 279 342 7 40 chr3 107090353 107090505 -110946653 + MIR SINE MIR 51 197 -65 1741 124 112 35 chr3 107090506 107090853 -110946305 + THE1C LTR MaLR 2 375 0 2559 130 7 9 chr3 107090853 107091257 -110945901 + THE1C-int LTR MaLR 1 391 -1260 2111 113 24 3 chr3 107091257 107091550 -110945608 - AluSg SINE Alu -11 299 1 2559 130 7 9 chr3 107091550 107091646 -110945512 + THE1C-int LTR MaLR 391 486 -1165 * 2568 137 2 7 chr3 107091613 107092037 -110945121 + THE1C-int LTR MaLR 1216 1637 -14 1998 135 30 76 chr3 107092051 107092093 -110945065 + THE1C LTR MaLR 1 43 -332 2283 69 0 0 chr3 107092093 107092369 -110944789 - AluY SINE Alu -3 308 33 1998 135 30 76 chr3 107092369 107092719 -110944439 + THE1C LTR MaLR 43 375 0 272 308 91 33 chr3 107092746 107093150 -110944008 - LTR16B LTR ERVL -3 447 1 2048 128 3 3 chr3 107093791 107094088 -110943070 - AluSx SINE Alu -15 297 1 209 268 98 24 chr3 107094144 107094267 -110942891 + L2 LINE L2 3147 3278 -35 1597 167 22 63 chr3 107094691 107095009 -110942149 + AluJb SINE Alu 1 305 -7 253 175 0 0 chr3 107095694 107095734 -110941424 + MIR3 SINE MIR 133 172 -36 1330 203 90 8 chr3 107096534 107096800 -110940358 + AluJo SINE Alu 1 288 -24 336 132 0 0 chr3 107096957 107097010 -110940148 + L2 LINE L2 3261 3313 0 370 283 0 18 chr3 107097056 107097169 -110939989 + L1ME LINE L1 5551 5661 -460 1435 180 173 3 chr3 107097169 107097386 -110939772 + MER2 DNA MER2_type 1 282 -63 2059 156 0 0 chr3 107097386 107097693 -110939465 - AluSx SINE Alu -5 307 1 1435 180 173 3 chr3 107097693 107097770 -110939388 + MER2 DNA MER2_type 282 345 0 904 249 125 79 chr3 107097918 107098359 -110938799 + MLT1K LTR MaLR 128 588 0 2121 111 0 51 chr3 107098521 107098836 -110938322 - AluSx SINE Alu -13 299 1 3221 108 46 0 chr3 107099061 107099494 -110937664 - MLT2A2 LTR ERVL 0 453 1 36134 67 12 3 chr3 107099494 107103962 -110933196 - HERVL-A2 LTR ERVL 0 5654 1226 180 0 0 0 chr3 107103962 107103982 -110933176 + (TA)n Simple_repeat Simple_repeat 2 21 0 2120 110 0 23 chr3 107103982 107104281 -110932877 - AluSp SINE Alu -21 292 1 36134 67 12 3 chr3 107104281 107104338 -110932820 - HERVL-A2 LTR ERVL -4427 1227 1089 2869 100 31 0 chr3 107104351 107104742 -110932416 - MLT2A2 LTR ERVL -50 403 1 1157 152 5 0 chr3 107104765 107104949 -110932209 - AluJo SINE Alu -8 304 120 980 73 0 0 chr3 107104961 107105085 -110932073 - HERVL LTR ERVL -5204 450 327 636 198 9 0 chr3 107105089 107105195 -110931963 - FLAM_C SINE Alu -35 108 2 989 203 56 0 chr3 107105273 107105388 -110931770 + AluJo SINE Alu 5 137 -175 235 43 22 43 chr3 107105388 107105434 -110931724 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 989 203 56 0 chr3 107105434 107105515 -110931643 + AluJo SINE Alu 137 212 -100 2347 239 78 10 chr3 107105810 107106438 -110930720 - L1ME3A LINE L1 -31 6139 5469 288 0 0 0 chr3 107106966 107106998 -110930160 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 180 0 0 0 chr3 107107315 107107335 -110929823 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 191 330 170 0 chr3 107107335 107107441 -110929717 - L2 LINE L2 -11 3261 3138 844 205 0 23 chr3 107107825 107107996 -110929162 - FRAM SINE Alu -9 167 1 180 0 0 0 chr3 107108098 107108118 -110929040 + (T)n Simple_repeat Simple_repeat 1 20 0 427 289 51 13 chr3 107108606 107108762 -110928396 - MER5A DNA MER1_type -21 168 7 430 150 38 0 chr3 107108897 107108977 -110928181 - L1MC2 LINE L1 0 6344 6262 3972 123 29 32 chr3 107108977 107109630 -110927528 - L1MC2 LINE L1 -304 6040 5390 662 165 0 0 chr3 107109631 107109734 -110927424 - FLAM_A SINE Alu -3 139 37 766 205 21 16 chr3 107109748 107109938 -110927220 - L1MC2 LINE L1 -978 5168 4978 366 230 27 117 chr3 107110021 107110182 -110926976 - L1MC5 LINE L1 -36 7925 7788 2155 132 0 0 chr3 107110182 107110485 -110926673 - AluSx SINE Alu -9 303 1 366 230 27 117 chr3 107110485 107110545 -110926613 - L1MC5 LINE L1 -173 7788 7724 737 275 18 14 chr3 107110545 107110767 -110926391 - Tigger1 DNA MER2_type 0 2418 2196 2077 154 108 18 chr3 107111392 107111906 -110925252 - L1M3 LINE L1 -450 5733 5175 280 356 61 17 chr3 107112375 107112482 -110924676 - MIR SINE MIR 0 262 142 4516 148 22 25 chr3 107112482 107113214 -110923944 + MER44D DNA MER2_type 4 605 0 280 356 61 17 chr3 107113214 107113286 -110923872 - MIR SINE MIR -120 142 75 395 182 0 11 chr3 107113289 107113377 -110923781 + T-rich Low_complexity Low_complexity 2 88 0 1474 158 0 5 chr3 107113382 107113603 -110923555 - AluSx SINE Alu -92 220 1 2949 6 0 0 chr3 107113997 107114311 -110922847 + AluYb8 SINE Alu 1 314 -4 2901 204 36 45 chr3 107114631 107115430 -110921728 - L1M4 LINE L1 -958 5188 4397 224 211 35 0 chr3 107115430 107115487 -110921671 + (TA)n Simple_repeat Simple_repeat 2 60 0 1286 154 64 79 chr3 107115509 107115663 -110921495 - AluJo SINE Alu -35 277 127 2193 132 0 0 chr3 107115663 107115959 -110921199 - AluSx SINE Alu -16 296 1 1286 154 64 79 chr3 107115959 107116084 -110921074 - AluJo SINE Alu -185 127 2 2473 166 21 21 chr3 107116094 107116607 -110920551 - L1M4 LINE L1 -1743 4403 3891 685 250 138 30 chr3 107116946 107117178 -110919980 - L1ME1 LINE L1 -26 6140 5884 981 248 65 75 chr3 107117691 107118119 -110919039 - MLT1L LTR MaLR 0 615 192 199 261 43 0 chr3 107118235 107118304 -110918854 + MIR SINE MIR 174 245 -17 1935 158 0 10 chr3 107120382 107120680 -110916478 + AluJb SINE Alu 1 295 -17 217 203 34 0 chr3 107120700 107120759 -110916399 + GA-rich Low_complexity Low_complexity 1 61 0 1566 188 42 84 chr3 107121117 107121483 -110915675 + MLT2D LTR ERVL 3 350 -64 694 32 11 11 chr3 107121483 107121577 -110915581 + (TCTA)n Simple_repeat Simple_repeat 4 97 0 1566 188 42 84 chr3 107121577 107121636 -110915522 + MLT2D LTR ERVL 350 410 -4 1406 209 120 30 chr3 107121869 107122311 -110914847 - MLT1D LTR MaLR -1 466 1 21 0 0 0 chr3 107122383 107122404 -110914754 + AT_rich Low_complexity Low_complexity 1 21 0 1805 110 28 88 chr3 107123100 107123222 -110913936 + AluSx SINE Alu 1 129 -183 2151 100 4 0 chr3 107123222 107123534 -110913624 + AluSx SINE Alu 1 313 0 1805 110 28 88 chr3 107123534 107123727 -110913431 + AluSx SINE Alu 129 298 -14 332 175 25 25 chr3 107124406 107124486 -110912672 - MER116 DNA Mariner 0 80 1 23 0 0 0 chr3 107126270 107126293 -110910865 + AT_rich Low_complexity Low_complexity 1 23 0 1102 179 5 34 chr3 107126406 107126613 -110910545 + AluJo SINE Alu 86 286 -26 2109 75 0 11 chr3 107126995 107127262 -110909896 - AluSg SINE Alu -7 303 40 413 217 76 41 chr3 107127267 107127290 -110909868 + MER34 LTR ERV1 207 228 -314 200 59 29 0 chr3 107127290 107127324 -110909834 + (CAA)n Simple_repeat Simple_repeat 3 37 0 413 217 76 41 chr3 107127324 107127504 -110909654 + MER34 LTR ERV1 228 469 -73 2176 122 3 13 chr3 107128133 107128437 -110908721 + AluSx SINE Alu 1 301 -11 682 284 114 16 chr3 107128593 107128910 -110908248 + L1ME LINE L1 5389 5736 -385 320 333 93 8 chr3 107129097 107129226 -110907932 + L2 LINE L2 3132 3271 -1 243 304 0 38 chr3 107129701 107129780 -110907378 + MER5A DNA MER1_type 14 89 -100 25 0 0 0 chr3 107129911 107129936 -110907222 + AT_rich Low_complexity Low_complexity 1 25 0 269 150 0 0 chr3 107129936 107129976 -110907182 - LTR23 LTR ERV1 -78 359 320 25 0 0 0 chr3 107130749 107130774 -110906384 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr3 107130864 107130886 -110906272 + GC_rich Low_complexity Low_complexity 1 22 0 2066 115 37 0 chr3 107131545 107131840 -110905318 - AluSq SINE Alu -7 306 1 2503 66 0 3 chr3 107132147 107132448 -110904710 + AluY SINE Alu 1 300 -11 672 174 15 30 chr3 107132577 107132709 -110904449 - FLAM_A SINE Alu -3 130 1 1333 158 115 29 chr3 107132992 107133270 -110903888 + AluJb SINE Alu 1 302 -10 2258 89 7 20 chr3 107133537 107133840 -110903318 - AluSg SINE Alu -11 299 1 996 222 48 4 chr3 107134079 107134331 -110902827 - MER114 LTR ERV 0 648 386 754 230 0 0 chr3 107134335 107134470 -110902688 - FLAM_C SINE Alu -8 135 1 790 220 65 5 chr3 107134471 107134788 -110902370 - MER114 LTR ERV -265 383 2 462 154 0 0 chr3 107134830 107134895 -110902263 + AluJb SINE Alu 2 66 -246 1357 157 0 67 chr3 107134928 107135022 -110902136 + AluJb SINE Alu 53 152 -160 2193 125 0 0 chr3 107135022 107135318 -110901840 + AluSx SINE Alu 1 296 -16 1357 157 0 67 chr3 107135318 107135478 -110901680 + AluJb SINE Alu 152 290 -22 26 0 0 0 chr3 107135649 107135675 -110901483 + AT_rich Low_complexity Low_complexity 1 26 0 500 74 62 0 chr3 107135734 107135815 -110901343 - L1MA4A LINE L1 -1 6302 6217 2484 170 13 80 chr3 107135828 107136440 -110900718 - L1 LINE L1 -2365 4483 3913 626 206 34 7 chr3 107136439 107136585 -110900573 + L1 LINE L1 2736 2885 -3261 * 1559 144 0 0 chr3 107136581 107136831 -110900327 - L1 LINE L1 -5095 1754 1505 3016 172 67 56 chr3 107136851 107137533 -110899625 + LTR8A LTR ERV1 38 727 0 5026 207 164 5 chr3 107137534 107138263 -110898895 - L1 LINE L1 -5346 1503 891 2233 121 10 0 chr3 107138263 107138569 -110898589 - AluSg SINE Alu -1 309 1 5026 207 164 5 chr3 107138569 107139012 -110898146 - L1 LINE L1 -5958 891 145 4441 130 30 28 chr3 107139016 107139741 -110897417 + MER50 LTR ERV1 1 727 -7 764 141 55 8 chr3 107139741 107139869 -110897289 - L1 LINE L1 -6714 135 2 1703 126 8 19 chr3 107139961 107140223 -110896935 - AluSx SINE Alu -15 297 39 329 169 17 0 chr3 107140315 107140374 -110896784 - MER94 DNA DNA -73 61 2 2605 47 0 0 chr3 107140596 107140893 -110896265 + AluY SINE Alu 1 297 -14 306 308 47 9 chr3 107141946 107142053 -110895105 - MLT1J2 LTR MaLR -46 404 294 294 250 68 0 chr3 107142056 107142144 -110895014 - L1ME3A LINE L1 -12 6158 6065 1950 154 20 0 chr3 107142946 107143244 -110893914 + AluJo SINE Alu 1 304 -8 196 328 125 0 chr3 107144097 107144161 -110892997 - MIR3 SINE MIR -52 156 85 250 228 0 0 chr3 107144366 107144423 -110892735 + MER94 DNA DNA 78 134 0 753 274 120 4 chr3 107144668 107144902 -110892256 + MIR SINE MIR 2 262 0 561 30 0 0 chr3 107145201 107145268 -110891890 + (TG)n Simple_repeat Simple_repeat 2 68 0 902 145 0 21 chr3 107145272 107145417 -110891741 - FRAM SINE Alu -30 146 5 297 277 19 13 chr3 107147123 107147310 -110889848 + L1M4 LINE L1 2386 2574 -3572 2404 70 3 13 chr3 107147341 107147641 -110889517 - AluY SINE Alu -14 297 1 4630 80 7 3 chr3 107147725 107148868 -110888290 + L1PA8A LINE L1 4748 5892 -239 2036 139 39 3 chr3 107149308 107149640 -110887518 + MER2 DNA MER2_type 1 344 0 2090 236 53 30 chr3 107150313 107151007 -110886151 + MER69 DNA AcHobo 53 762 -464 495 168 10 10 chr3 107151070 107151171 -110885987 + MER69 DNA AcHobo 2423 2523 -3 750 203 0 0 chr3 107151225 107151358 -110885800 + FLAM_C SINE Alu 1 133 0 745 222 0 13 chr3 107151369 107151573 -110885585 + L1ME1 LINE L1 5839 5994 -172 297 305 0 21 chr3 107151634 107151729 -110885429 + MIR SINE MIR 8 100 -162 332 196 43 22 chr3 107151778 107151870 -110885288 - L1ME1 LINE L1 -5 6161 6068 407 291 17 23 chr3 107151874 107152049 -110885109 - MER58A DNA MER1_type -2 222 49 1405 81 0 0 chr3 107152063 107152236 -110884922 - AluSq SINE Alu -14 299 127 303 196 0 0 chr3 107152248 107152304 -110884854 - L1MC4 LINE L1 -1339 6703 6648 339 25 0 0 chr3 107152306 107152346 -110884812 + (CA)n Simple_repeat Simple_repeat 2 41 0 961 122 23 0 chr3 107152346 107152477 -110884681 - AluSq SINE Alu -178 134 1 1640 121 77 7 chr3 107152542 107152814 -110884344 - L1PA7 LINE L1 0 6154 5864 566 270 103 55 chr3 107153206 107153810 -110883348 - L1ME4a LINE L1 -13 6108 5476 2481 78 0 0 chr3 107153884 107154191 -110882967 - AluY SINE Alu -4 307 1 1560 200 14 3 chr3 107154320 107154605 -110882553 - AluJo SINE Alu -24 288 1 380 283 38 1 chr3 107155211 107155329 -110881829 + MIR SINE MIR 39 160 -48 975 285 16 12 chr3 107155426 107155682 -110881476 + MIR SINE MIR 5 261 -1 244 363 48 0 chr3 107155670 107155816 -110881342 + L2 LINE L2 1923 2075 -1239 * 429 248 101 7 chr3 107155940 107156089 -110881069 - MER58A DNA MER1_type -25 199 37 216 294 109 11 chr3 107156163 107156255 -110880903 + L2 LINE L2 3136 3236 -36 552 319 38 0 chr3 107157430 107157590 -110879568 - L2 LINE L2 0 3272 3107 1247 215 118 52 chr3 107157592 107158207 -110878951 + L1ME2 LINE L1 5705 6165 -1 241 253 195 0 chr3 107158501 107158588 -110878570 - L2 LINE L2 -262 3010 2907 2584 50 0 0 chr3 107159714 107160012 -110877146 - AluY SINE Alu -13 298 1 814 313 97 22 chr3 107163150 107163786 -110873372 + L2 LINE L2 2633 3313 0 4166 68 34 68 chr3 107164979 107165629 -110871529 + L1PA8 LINE L1 5540 6167 -5 251 271 82 109 chr3 107165822 107166151 -110871007 + L2 LINE L2 2914 3233 -39 297 258 54 21 chr3 107167631 107167724 -110869434 - MIR3 SINE MIR -3 205 110 1031 216 41 28 chr3 107168387 107168477 -110868681 - MER33 DNA MER1_type -2261 324 237 2031 171 58 2 chr3 107168477 107168843 -110868315 - L1MB4 LINE L1 -16 6164 5769 477 50 0 0 chr3 107168843 107168903 -110868255 + (TA)n Simple_repeat Simple_repeat 1 60 0 2031 171 58 2 chr3 107168903 107168963 -110868195 - L1MB4 LINE L1 -411 5769 5714 1031 216 41 28 chr3 107168963 107169192 -110867966 - MER33 DNA MER1_type -2348 237 1 541 321 14 14 chr3 107169283 107169492 -110867666 + MIR SINE MIR 5 213 -49 229 324 88 0 chr3 107169554 107169622 -110867536 + L2 LINE L2 3147 3220 -52 2020 210 206 27 chr3 107169914 107171025 -110866133 + L1MC4 LINE L1 6446 7844 -198 753 51 0 0 chr3 107171175 107171273 -110865885 + (GA)n Simple_repeat Simple_repeat 1 98 0 437 174 32 11 chr3 107171282 107171389 -110865769 + L1MC4 LINE L1 7880 7985 -10 370 310 65 52 chr3 107171396 107171628 -110865530 + MIR SINE MIR 20 254 -8 213 217 17 33 chr3 107171600 107171660 -110865498 + L2 LINE L2 3254 3312 -1 * 243 61 0 0 chr3 107172285 107172318 -110864840 + (CA)n Simple_repeat Simple_repeat 2 34 0 425 245 9 38 chr3 107174738 107174844 -110862314 - L2 LINE L2 -1 3312 3210 184 329 43 0 chr3 107175357 107175427 -110861731 - MIR SINE MIR -98 164 92 1668 214 60 20 chr3 107176935 107177383 -110859775 + L1ME1 LINE L1 5691 6156 -10 196 235 37 74 chr3 107177514 107177595 -110859563 - MIR3 SINE MIR -31 177 100 324 243 162 37 chr3 107178175 107178311 -110858847 + MIR SINE MIR 12 164 -98 22 0 0 0 chr3 107178813 107178835 -110858323 + AT_rich Low_complexity Low_complexity 1 22 0 6347 27 3 0 chr3 107184342 107185084 -110852074 + L1PA4 LINE L1 5409 6152 -3 415 300 119 19 chr3 107186166 107186376 -110850782 + MIR SINE MIR 20 250 -12 315 366 132 10 chr3 107186438 107186848 -110850310 + L2 LINE L2 344 803 -2511 328 211 0 0 chr3 107186979 107187036 -110850122 + L2 LINE L2 3255 3311 -2 242 320 21 31 chr3 107187083 107187180 -110849978 - MIR SINE MIR -90 172 77 763 289 34 13 chr3 107188183 107188418 -110848740 - MIR SINE MIR 0 262 23 410 194 40 40 chr3 107189099 107189223 -110847935 + L1MD1 LINE L1 4414 4537 -1609 899 201 0 0 chr3 107189226 107189395 -110847763 + MER2 DNA MER2_type 3 171 -174 1703 150 28 31 chr3 107189395 107189721 -110847437 - MER1B DNA MER1_type 0 339 15 316 45 0 0 chr3 107189723 107189767 -110847391 + MER2 DNA MER2_type 164 207 -138 6800 126 12 2 chr3 107189790 107191238 -110845920 - L1MA2 LINE L1 0 6304 4843 27 62 0 0 chr3 107191246 107191294 -110845864 + AT_rich Low_complexity Low_complexity 1 48 0 374 212 0 0 chr3 107191294 107191360 -110845798 + MER2 DNA MER2_type 280 345 0 1996 201 52 22 chr3 107191389 107191721 -110845437 + L1MD1 LINE L1 4564 4885 -1357 2372 77 10 19 chr3 107191721 107192033 -110845125 + AluY SINE Alu 1 309 -2 1996 201 52 22 chr3 107192033 107193237 -110843921 + L1MD1 LINE L1 4885 6242 0 22 94 0 0 chr3 107193244 107193308 -110843850 + AT_rich Low_complexity Low_complexity 1 64 0 237 245 122 0 chr3 107193334 107193432 -110843726 + L1ME4a LINE L1 6007 6116 -5 386 267 0 0 chr3 107194027 107194113 -110843045 - MIR SINE MIR -3 259 174 365 254 131 0 chr3 107194114 107194244 -110842914 + Charlie2a DNA MER1_type 2 148 -2634 238 148 37 12 chr3 107194451 107194532 -110842626 + Charlie2a DNA MER1_type 933 1015 -1847 323 167 15 0 chr3 107194540 107194606 -110842552 + Charlie2a DNA MER1_type 2759 2825 -37 719 269 0 28 chr3 107194632 107194814 -110842344 - MIR SINE MIR -81 181 5 2610 55 0 0 chr3 107195396 107195704 -110841454 - AluY SINE Alu -1 310 3 454 283 87 14 chr3 107196760 107196898 -110840260 - MIR3 SINE MIR -21 187 40 2303 94 20 0 chr3 107198579 107198877 -110838281 + AluSx SINE Alu 1 304 -8 3028 220 41 48 chr3 107198880 107199993 -110837165 + L1ME1 LINE L1 5044 6148 -18 247 295 320 0 chr3 107201496 107201618 -110835540 - MER5B DNA MER1_type -15 163 3 803 137 8 8 chr3 107202837 107202968 -110834190 + FLAM_C SINE Alu 2 132 -1 916 239 0 0 chr3 107203199 107203387 -110833771 - MER5A DNA MER1_type 0 189 2 812 146 93 13 chr3 107204751 107204902 -110832256 + MER20 DNA MER1_type 11 173 -46 180 281 109 0 chr3 107205390 107205454 -110831704 + L3b LINE CR1 1256 1326 -257 508 276 63 17 chr3 107206152 107206326 -110830832 + MER5A DNA MER1_type 7 188 -1 859 148 7 7 chr3 107206427 107206562 -110830596 + AluJo SINE Alu 1 135 -177 21 0 0 0 chr3 107206562 107206583 -110830575 + AT_rich Low_complexity Low_complexity 1 21 0 514 277 35 12 chr3 107207331 107207550 -110829608 + MLT1H1 LTR MaLR 1 200 -330 1427 83 79 14 chr3 107207698 107207801 -110829357 - MER30 DNA MER1_type 0 230 135 2072 125 0 10 chr3 107207801 107208104 -110829054 - AluSx SINE Alu -12 300 1 1427 83 79 14 chr3 107208104 107208216 -110828942 - MER30 DNA MER1_type -95 135 1 330 219 0 0 chr3 107208229 107208302 -110828856 + MLT1H LTR MaLR 477 549 0 1599 178 55 0 chr3 107208789 107209064 -110828094 - AluJb SINE Alu -16 296 7 182 247 68 68 chr3 107210354 107210427 -110826731 - L2 LINE L2 -515 2799 2727 204 299 117 0 chr3 107210671 107210748 -110826410 - MIR3 SINE MIR -7 201 116 * 298 276 126 11 chr3 107210723 107210810 -110826348 + MER5A DNA MER1_type 6 102 -87 197 213 149 0 chr3 107210865 107210912 -110826246 - MIR SINE MIR -68 140 87 215 135 0 27 chr3 107211132 107211169 -110825989 + (GAAAA)n Simple_repeat Simple_repeat 2 37 0 2353 119 0 0 chr3 107211717 107212029 -110825129 + AluSx SINE Alu 1 312 0 1076 243 14 0 chr3 107213346 107213564 -110823594 - MER58A DNA MER1_type -3 221 1 207 0 0 0 chr3 107215608 107215631 -110821527 + (A)n Simple_repeat Simple_repeat 1 23 0 2206 122 3 0 chr3 107215791 107216103 -110821055 + AluSq SINE Alu 1 313 0 1713 110 0 0 chr3 107217870 107218097 -110819061 + AluSg/x SINE Alu 76 302 -8 663 251 35 10 chr3 107218104 107218307 -110818851 - MER46C DNA MER2_type -51 287 80 261 0 0 0 chr3 107218337 107218366 -110818792 + (CA)n Simple_repeat Simple_repeat 2 30 0 241 291 112 28 chr3 107218410 107218589 -110818569 - L1ME LINE L1 -522 5599 5406 288 0 0 0 chr3 107219518 107219550 -110817608 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2748 3 0 0 chr3 107219903 107220197 -110816961 + AluYa5 SINE Alu 18 311 0 917 220 33 0 chr3 107220658 107220840 -110816318 - MER5A DNA MER1_type 0 189 2 333 257 62 61 chr3 107221213 107221389 -110815769 + MIR SINE MIR 15 185 -69 549 195 0 128 chr3 107221400 107221549 -110815609 - MER5A DNA MER1_type 0 189 60 186 362 85 11 chr3 107221660 107221754 -110815404 + L2 LINE L2 3169 3269 -3 235 270 76 54 chr3 107223722 107223843 -110813315 - MIR SINE MIR -41 167 26 254 271 146 0 chr3 107224032 107224128 -110813030 + HsTC2 DNA Tc2 39 148 -1750 2554 64 0 0 chr3 107224300 107224611 -110812547 + AluY SINE Alu 1 311 0 789 176 0 7 chr3 107224687 107224840 -110812318 + L1MB3 LINE L1 6024 6175 -8 739 267 54 42 chr3 107224855 107225095 -110812063 + MIR SINE MIR 20 262 0 31 0 0 0 chr3 107225548 107225579 -110811579 + AT_rich Low_complexity Low_complexity 1 31 0 1637 179 10 32 chr3 107225824 107226137 -110811021 - AluJb SINE Alu -6 306 1 760 295 11 41 chr3 107226785 107227056 -110810102 + Charlie8 DNA MER1_type 10 272 -2145 198 313 73 31 chr3 107227163 107227259 -110809899 + L2 LINE L2 3209 3308 -5 587 348 16 8 chr3 107228492 107228736 -110808422 + MIR SINE MIR 2 247 -15 201 217 65 0 chr3 107229463 107229509 -110807649 - L3 LINE CR1 -5 1572 1524 2512 40 0 17 chr3 107229693 107229992 -110807166 - AluY SINE Alu -17 294 1 304 219 70 55 chr3 107231054 107231182 -110805976 + L1ME4a LINE L1 5980 6109 -12 547 286 103 15 chr3 107232112 107232155 -110805003 - MER102a DNA MER1_type -1087 330 292 663 37 0 0 chr3 107232155 107232237 -110804921 + (CATAA)n Simple_repeat Simple_repeat 4 85 0 547 286 103 15 chr3 107232237 107232466 -110804692 - MER102a DNA MER1_type -1125 292 34 1695 203 25 15 chr3 107233105 107233504 -110803654 + MLT1C LTR MaLR 59 461 -6 279 181 62 25 chr3 107234713 107234873 -110802285 + (TA)n Simple_repeat Simple_repeat 1 166 0 3670 33 2 11 chr3 107234906 107235357 -110801801 + L1PA4 LINE L1 5706 6152 -3 27 29 0 0 chr3 107235370 107235404 -110801754 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr3 107235625 107235655 -110801503 + AT_rich Low_complexity Low_complexity 1 30 0 2208 92 7 0 chr3 107235882 107236194 -110800964 + AluSx SINE Alu 1 314 0 1782 139 121 23 chr3 107236729 107237117 -110800041 - Tigger2a DNA MER2_type -7 427 2 253 279 63 0 chr3 107238932 107239011 -110798147 - MIR SINE MIR -59 149 66 303 250 10 42 chr3 107239525 107239621 -110797537 - MIR SINE MIR -72 190 98 246 309 15 15 chr3 107239868 107239936 -110797222 - L2 LINE L2 -18 3254 3187 344 252 147 42 chr3 107241392 107241535 -110795623 - MIR SINE MIR 0 262 105 1147 337 103 17 chr3 107241538 107242530 -110794628 + L2 LINE L2 2198 3271 -1 999 161 23 8 chr3 107242643 107243026 -110794132 + L1MA7 LINE L1 5774 6278 -13 219 324 78 28 chr3 107243699 107243841 -110793317 - L3 LINE CR1 -690 887 739 23 0 0 0 chr3 107245101 107245124 -110792034 + AT_rich Low_complexity Low_complexity 1 23 0 2476 82 0 0 chr3 107246659 107246962 -110790196 + AluY SINE Alu 1 303 -8 582 209 39 96 chr3 107247756 107247911 -110789247 - L1MC4a LINE L1 -1831 5977 5844 622 183 15 44 chr3 107247911 107248048 -110789110 + FLAM_A SINE Alu 1 133 0 582 209 39 96 chr3 107248048 107248174 -110788984 - L1MC4a LINE L1 -1964 5844 5712 2256 84 3 50 chr3 107248456 107248777 -110788381 + AluSx SINE Alu 1 306 -6 4544 199 77 16 chr3 107249289 107250548 -110786610 - L1MC4 LINE L1 -5 8037 6702 376 232 98 24 chr3 107250829 107250993 -110786165 + L1MC5 LINE L1 7754 7929 -32 1978 103 33 0 chr3 107251148 107251444 -110785714 + AluSg SINE Alu 1 305 0 3312 188 19 14 chr3 107253508 107254232 -110782926 - L1 LINE L1 -2013 4133 3406 1658 236 10 2 chr3 107254244 107254651 -110782507 + L1 LINE L1 2484 2893 -3253 2362 94 47 3 chr3 107254651 107254991 -110782167 - THE1A LTR MaLR 0 355 1 473 27 27 0 chr3 107254991 107255065 -110782093 - THE1A-int LTR MaLR 0 1580 1505 449 349 114 15 chr3 107255579 107255851 -110781307 - L2 LINE L2 -338 2976 2678 758 264 102 0 chr3 107255892 107256108 -110781050 - MIR SINE MIR -6 256 19 234 253 0 84 chr3 107256151 107256234 -110780924 - L2 LINE L2 -665 2649 2574 33 56 0 0 chr3 107256327 107256381 -110780777 + AT_rich Low_complexity Low_complexity 1 54 0 247 235 0 0 chr3 107256681 107256732 -110780426 + (CA)n Simple_repeat Simple_repeat 2 52 0 271 174 13 91 chr3 107256814 107256891 -110780267 + FRAM/FAM SINE Alu 1 59 -107 2137 108 27 0 chr3 107257797 107258094 -110779064 + AluSp SINE Alu 1 305 -8 24 32 0 0 chr3 107258285 107258316 -110778842 + AT_rich Low_complexity Low_complexity 1 31 0 218 214 0 0 chr3 107258478 107258520 -110778638 - L2 LINE L2 -6 3307 3266 3113 178 19 3 chr3 107258740 107259376 -110777782 + L1 LINE L1 4494 5139 -1007 252 143 0 0 chr3 107259376 107259418 -110777740 + (A)n Simple_repeat Simple_repeat 1 42 0 315 259 146 13 chr3 107259739 107259897 -110777261 + MIR SINE MIR 80 258 -4 1177 229 70 3 chr3 107260623 107260938 -110776220 + MER58B DNA MER1_type 1 336 -5 29 94 0 0 chr3 107263359 107263444 -110773714 + AT_rich Low_complexity Low_complexity 1 85 0 904 150 14 0 chr3 107263552 107263692 -110773466 - FRAM SINE Alu -43 133 1 1831 180 58 5 chr3 107263696 107264412 -110772746 - L1M2 LINE L1 -640 5672 4920 318 294 62 17 chr3 107264442 107264549 -110772609 + LTR16A LTR ERVL 239 359 -91 2165 116 3 7 chr3 107264549 107264851 -110772307 - AluSc SINE Alu -8 301 1 318 294 62 17 chr3 107264851 107264920 -110772238 + LTR16A LTR ERVL 359 423 -27 676 216 126 0 chr3 107264943 107265110 -110772048 - MLT2B1 LTR ERVL -85 435 248 770 179 0 0 chr3 107265115 107265255 -110771903 - FLAM_C SINE Alu -3 140 1 253 194 16 0 chr3 107265470 107265532 -110771626 + L1PB4 LINE L1 4244 4306 -1840 3765 157 25 4 chr3 107265533 107266824 -110770334 + L1PB4 LINE L1 4475 5791 -365 231 167 0 0 chr3 107266830 107266872 -110770286 + (TA)n Simple_repeat Simple_repeat 1 42 0 265 219 0 62 chr3 107266875 107266971 -110770187 + L1MC4 LINE L1 6614 6703 -1339 240 35 0 0 chr3 107266993 107267022 -110770136 + (CA)n Simple_repeat Simple_repeat 2 30 0 2275 125 11 13 chr3 107267030 107267405 -110769753 + L1PB4 LINE L1 5782 6155 -1 27 29 0 0 chr3 107267410 107267444 -110769714 + AT_rich Low_complexity Low_complexity 1 34 0 5305 159 39 47 chr3 107268158 107269183 -110767975 + L1MA9 LINE L1 4805 5795 -517 191 36 36 0 chr3 107269183 107269211 -110767947 + (TA)n Simple_repeat Simple_repeat 1 29 0 5305 159 39 47 chr3 107269211 107269725 -110767433 + L1MA9 LINE L1 5795 6312 0 2190 109 0 0 chr3 107269856 107270188 -110766970 + AluSx SINE Alu 1 332 0 783 189 0 63 chr3 107270226 107270385 -110766773 + AluJo SINE Alu 1 149 -163 1092 180 26 44 chr3 107270386 107270424 -110766734 + AluJb SINE Alu 82 119 -193 180 97 0 0 chr3 107270424 107270455 -110766703 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1092 180 26 44 chr3 107270455 107270644 -110766514 + AluJb SINE Alu 119 305 -7 22 35 0 0 chr3 107271493 107271522 -110765636 + AT_rich Low_complexity Low_complexity 1 29 0 203 265 0 0 chr3 107271555 107271604 -110765554 + (TTCA)n Simple_repeat Simple_repeat 1 49 0 1971 109 0 48 chr3 107272476 107272788 -110764370 + AluSg SINE Alu 1 297 -13 225 271 221 16 chr3 107272888 107273010 -110764148 - MER5B DNA MER1_type -31 147 1 189 0 0 0 chr3 107273118 107273139 -110764019 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 209 171 0 0 chr3 107273536 107273571 -110763587 + (CCCA)n Simple_repeat Simple_repeat 2 36 0 199 370 62 0 chr3 107273800 107273881 -110763277 + L2 LINE L2 3185 3270 -2 1993 71 0 26 chr3 107274105 107274373 -110762785 + AluY SINE Alu 1 261 -50 309 26 0 0 chr3 107274760 107274799 -110762359 - MADE1 DNA Mariner 0 80 42 316 125 21 0 chr3 107275434 107275482 -110761676 - MER5B DNA MER1_type -129 49 1 1205 217 103 15 chr3 107275608 107276073 -110761085 - L1M4 LINE L1 -2751 3395 2890 2599 82 8 3 chr3 107276074 107276427 -110760731 + THE1A LTR MaLR 1 355 0 9836 87 8 1 chr3 107276427 107277801 -110759357 + THE1A-int LTR MaLR 1 1384 -196 2378 98 3 3 chr3 107278107 107278412 -110758746 - AluSc SINE Alu -4 305 1 324 0 0 0 chr3 107279263 107279299 -110757859 + (TG)n Simple_repeat Simple_repeat 1 36 0 306 0 0 0 chr3 107279298 107279332 -110757826 + (GA)n Simple_repeat Simple_repeat 1 34 0 * 25 0 0 0 chr3 107279435 107279460 -110757698 + AT_rich Low_complexity Low_complexity 1 25 0 549 296 34 15 chr3 107283712 107283918 -110753240 - Charlie8 DNA MER1_type -2127 290 81 1632 253 155 13 chr3 107283921 107284700 -110752458 + L2 LINE L2 2425 3313 0 398 250 0 28 chr3 107288457 107288565 -110748593 - MER5A DNA MER1_type -80 109 5 295 324 6 14 chr3 107290319 107290510 -110746648 + MIR SINE MIR 20 256 -6 195 262 0 0 chr3 107290574 107290616 -110746542 + L2 LINE L2 3220 3261 -11 289 299 174 7 chr3 107291135 107291279 -110745879 + MIR3 SINE MIR 32 199 -9 1003 244 5 0 chr3 107292504 107292713 -110744445 - MER58A DNA MER1_type -1 223 14 860 201 0 24 chr3 107293198 107293362 -110743796 - FRAM SINE Alu -15 161 2 212 302 103 60 chr3 107293551 107293783 -110743375 - L2 LINE L2 -115 3198 2957 23 0 0 0 chr3 107493881 107493904 -110543254 + AT_rich Low_complexity Low_complexity 1 23 0 352 242 25 17 chr3 107494016 107494136 -110543022 + L1MC5 LINE L1 7347 7467 -494 832 199 20 56 chr3 107494167 107494363 -110542795 - MER20 DNA MER1_type -27 192 4 567 206 21 96 chr3 107494464 107494746 -110542412 + L1MC5 LINE L1 7668 7928 -33 425 203 98 30 chr3 107494785 107494918 -110542240 + HAL1 LINE L1 2352 2493 -14 241 176 20 0 chr3 107495050 107495101 -110542057 + L1MC5 LINE L1 7380 7431 -530 1134 145 9 33 chr3 107496192 107496406 -110540752 + MER3 DNA MER1_type 1 209 0 505 210 32 25 chr3 107497310 107497467 -110539691 - L1MC5 LINE L1 -627 7334 7177 21 57 0 0 chr3 107497553 107497588 -110539570 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr3 107497738 107497759 -110539399 + AT_rich Low_complexity Low_complexity 1 21 0 583 241 29 0 chr3 107497814 107497951 -110539207 + L1MB5 LINE L1 5903 6043 -131 536 269 32 18 chr3 107497952 107498161 -110538997 + MLT1G1 LTR MaLR 281 590 -5 897 264 63 94 chr3 107498442 107499015 -110538143 - MLT1H1 LTR MaLR 0 555 1 304 287 126 29 chr3 107499143 107499317 -110537841 - L1M4 LINE L1 -1910 4236 4046 280 232 226 0 chr3 107499458 107499626 -110537532 - L1M4 LINE L1 -2149 3997 3792 21 0 0 0 chr3 107499643 107499664 -110537494 + AT_rich Low_complexity Low_complexity 1 21 0 2276 113 3 0 chr3 107499664 107499975 -110537183 - AluSx SINE Alu 0 312 1 196 274 151 0 chr3 107500111 107500184 -110536974 + MIR SINE MIR 30 113 -95 367 296 17 9 chr3 107500322 107500437 -110536721 - MIR SINE MIR 0 262 147 2110 146 0 0 chr3 107500924 107501232 -110535926 + AluJb SINE Alu 5 312 0 31 58 0 0 chr3 107501852 107501904 -110535254 + AT_rich Low_complexity Low_complexity 1 52 0 240 307 29 14 chr3 107504036 107504176 -110532982 - HAL1b LINE L1 -27 1321 1180 2147 102 3 3 chr3 107504289 107504573 -110532585 + AluSc SINE Alu 1 284 -25 504 0 0 0 chr3 107504574 107504630 -110532528 + (TATAA)n Simple_repeat Simple_repeat 1 56 0 543 328 62 29 chr3 107504634 107504990 -110532168 + L2 LINE L2 2790 3167 -146 21 36 0 0 chr3 107505649 107505677 -110531481 + AT_rich Low_complexity Low_complexity 1 28 0 486 280 14 7 chr3 107507285 107507428 -110529730 + L1ME LINE L1 6 149 -5921 644 304 36 3 chr3 107507782 107508147 -110529011 - L1M4 LINE L1 -3450 2696 2320 218 206 15 0 chr3 107508223 107508291 -110528867 + (TTA)n Simple_repeat Simple_repeat 1 69 0 5967 122 35 16 chr3 107508454 107509137 -110528021 + L1MA8 LINE L1 5214 5924 -367 14427 128 30 14 chr3 107509137 107511515 -110525643 + Tigger1 DNA MER2_type 1 2418 0 5967 122 35 16 chr3 107511515 107511868 -110525290 + L1MA8 LINE L1 5924 6269 -22 733 160 8 0 chr3 107512004 107512123 -110525035 - FLAM_A SINE Alu -11 122 3 1000 173 6 22 chr3 107512149 107512328 -110524830 + AluJo SINE Alu 124 299 -13 820 275 22 51 chr3 107512520 107512793 -110524365 - LTR16A1 LTR ERVL -3 454 190 237 119 0 51 chr3 107513642 107513701 -110523457 + (TA)n Simple_repeat Simple_repeat 1 56 0 973 150 12 30 chr3 107513745 107513912 -110523246 + FRAM SINE Alu 1 163 -13 928 207 58 0 chr3 107514203 107514391 -110522767 + MER8 DNA MER2_type 41 239 0 212 270 11 79 chr3 107514555 107514644 -110522514 - L2 LINE L2 0 3313 3231 249 289 0 40 chr3 107515077 107515153 -110522005 - MER5A DNA MER1_type 0 189 117 27 49 0 0 chr3 107515199 107515240 -110521918 + AT_rich Low_complexity Low_complexity 1 41 0 319 371 65 29 chr3 107515551 107515826 -110521332 + L3 LINE CR1 1088 1372 -205 211 318 32 0 chr3 107516499 107516562 -110520596 + L2 LINE L2 3244 3308 -5 6784 191 44 12 chr3 107516591 107517098 -110520060 - L1MA3 LINE L1 -1 7723 7234 1996 90 69 17 chr3 107517098 107517388 -110519770 - AluY SINE Alu -6 305 1 6784 191 44 12 chr3 107517388 107519595 -110517563 - L1MA3 LINE L1 -490 7234 4931 1213 168 25 53 chr3 107519598 107519842 -110517316 + THE1B LTR MaLR 1 237 -127 1130 151 0 0 chr3 107519866 107520032 -110517126 - THE1B LTR MaLR 0 364 199 6218 147 73 5 chr3 107520032 107521404 -110515754 + THE1B-int LTR MaLR 48 1580 0 2347 127 8 27 chr3 107521404 107521775 -110515383 + THE1B LTR MaLR 1 364 0 679 201 0 0 chr3 107521776 107521915 -110515243 - L1MA3 LINE L1 -2639 4926 4788 7327 118 28 7 chr3 107521917 107523363 -110513795 - L1MA3 LINE L1 -3588 3977 2491 4973 172 14 4 chr3 107523347 107524156 -110513002 - L1MA3 LINE L1 -5848 1717 901 * 8488 168 16 15 chr3 107524263 107525456 -110511702 + L1PA13 LINE L1 3700 4890 -1273 1878 154 0 0 chr3 107525456 107525741 -110511417 - AluSx SINE Alu -5 307 23 8488 168 16 15 chr3 107525741 107526865 -110510293 + L1PA13 LINE L1 4890 6041 -122 2276 75 7 3 chr3 107526865 107527158 -110510000 + AluY SINE Alu 1 294 -17 8488 168 16 15 chr3 107527158 107527282 -110509876 + L1PA13 LINE L1 6041 6163 0 371 64 0 0 chr3 107527282 107527329 -110509829 + L1MA3 LINE L1 6059 6105 -200 2139 208 75 51 chr3 107527447 107527977 -110509181 - MER21B LTR ERV1 -11 852 310 354 294 20 73 chr3 107528062 107528266 -110508892 + LTR67 LTR ERVL 353 545 -12 362 321 64 21 chr3 107528266 107528453 -110508705 + MIR SINE MIR 68 262 0 380 222 0 111 chr3 107528471 107528544 -110508614 + MER5A DNA MER1_type 4 83 -106 1335 210 38 21 chr3 107528544 107528834 -110508324 + AluJo SINE Alu 4 298 -14 366 80 0 0 chr3 107528834 107528884 -110508274 + (TA)n Simple_repeat Simple_repeat 2 51 0 380 222 0 111 chr3 107528884 107528928 -110508230 + MER5A DNA MER1_type 81 106 -83 561 245 35 14 chr3 107529011 107529154 -110508004 + MIR SINE MIR 37 182 -80 1666 182 91 52 chr3 107529156 107529595 -110507563 + MLT1D LTR MaLR 1 456 -49 1206 236 61 30 chr3 107529607 107529903 -110507255 - MER21B LTR ERV1 -539 324 20 1074 166 66 23 chr3 107529985 107530244 -110506914 + L1MD3 LINE L1 7726 7995 0 391 323 137 30 chr3 107530462 107530827 -110506331 + L2 LINE L2 2455 2858 -456 715 179 26 11 chr3 107531930 107532204 -110504954 + GA-rich Low_complexity Low_complexity 1 278 0 670 370 86 27 chr3 107532242 107532337 -110504821 + L3 LINE CR1 204 292 -1285 896 198 29 19 chr3 107532337 107532544 -110504614 - MER3 DNA MER1_type 0 209 1 670 370 86 27 chr3 107532544 107532927 -110504231 + L3 LINE CR1 292 710 -867 235 239 0 0 chr3 107532984 107533030 -110504128 + L2 LINE L2 3190 3235 -37 2042 118 3 10 chr3 107533055 107533352 -110503806 + AluSg SINE Alu 1 295 -15 24 67 0 0 chr3 107533387 107533432 -110503726 + AT_rich Low_complexity Low_complexity 1 45 0 251 211 40 26 chr3 107533460 107533536 -110503622 + L1ME4a LINE L1 5940 6016 -105 780 324 138 65 chr3 107533659 107534287 -110502871 + L3 LINE CR1 708 1408 -169 3446 160 4 49 chr3 107534287 107534442 -110502716 + L1MC1 LINE L1 5676 5836 -497 2032 136 0 3 chr3 107534442 107534729 -110502429 + AluSx SINE Alu 1 286 -26 3446 160 4 49 chr3 107534729 107535262 -110501896 + L1MC1 LINE L1 5836 6333 0 780 324 138 65 chr3 107535262 107535433 -110501725 + L3 LINE CR1 1408 1565 -12 383 220 202 0 chr3 107537269 107537378 -110499780 - L2 LINE L2 -1 3312 3182 342 306 206 0 chr3 107537679 107537878 -110499280 + MIR SINE MIR 2 241 -21 216 0 0 0 chr3 107537891 107537915 -110499243 + (TTA)n Simple_repeat Simple_repeat 3 26 0 2580 192 31 49 chr3 107538259 107538286 -110498872 - MLT2B3 LTR ERVL -13 541 515 520 49 12 12 chr3 107538286 107538367 -110498791 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 2580 192 31 49 chr3 107538367 107538890 -110498268 - MLT2B3 LTR ERVL -39 515 1 823 234 75 15 chr3 107540592 107540793 -110496365 + MIR SINE MIR 47 259 -3 3636 118 70 5 chr3 107540967 107541553 -110495605 - L1PA14 LINE L1 0 6161 5538 213 317 59 40 chr3 107541572 107541673 -110495485 + L2 LINE L2 2594 2696 -618 547 305 30 59 chr3 107542304 107542609 -110494549 + MLT1J LTR MaLR 1 296 -215 180 0 0 0 chr3 107542776 107542796 -110494362 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 12484 30 3 1 chr3 107542796 107545062 -110492096 - L1PA3 LINE L1 -4 6151 3883 1288 183 38 102 chr3 107545222 107545622 -110491536 + MLT1A2 LTR MaLR 1 374 0 27 29 0 0 chr3 107546045 107546079 -110491079 + AT_rich Low_complexity Low_complexity 1 34 0 1047 164 16 0 chr3 107546156 107546339 -110490819 - Tigger1 DNA MER2_type -2 2416 2231 331 152 411 9 chr3 107546384 107546496 -110490662 - Tigger1 DNA MER2_type -2261 157 1 1138 93 58 0 chr3 107546652 107546824 -110490334 - THE1-int LTR MaLR -102 1478 1297 1300 224 77 3 chr3 107548226 107548525 -110488633 + L1MA9 LINE L1 1 321 -6709 3331 275 52 35 chr3 107548525 107550780 -110486378 + L1MA9 LINE L1 1134 3059 -4047 1968 153 3 23 chr3 107550780 107551081 -110486077 + AluSx SINE Alu 1 295 -17 3331 275 52 35 chr3 107551081 107551649 -110485509 + L1MA9 LINE L1 3059 3616 -3490 886 106 0 68 chr3 107551649 107551781 -110485377 + AluSx SINE Alu 31 153 -159 907 223 8 27 chr3 107551810 107552070 -110485088 + L1MA9 LINE L1 3636 3890 -3216 2591 161 45 94 chr3 107552070 107552741 -110484417 + L1MA9 LINE L1 5605 6242 -864 1372 226 24 39 chr3 107552745 107553077 -110484081 + MLT1A1 LTR MaLR 1 327 -38 2707 139 4 9 chr3 107553089 107553549 -110483609 + L1MA9 LINE L1 6222 6679 -593 297 143 10 133 chr3 107553649 107553714 -110483444 + L1MA9 LINE L1 7071 7122 -150 1713 201 58 0 chr3 107553714 107554058 -110483100 + MLT1A1 LTR MaLR 2 365 0 297 143 10 133 chr3 107554058 107554090 -110483068 + L1MA9 LINE L1 7122 7156 -116 256 294 33 11 chr3 107554197 107554289 -110482869 - MIR SINE MIR -63 145 52 292 325 8 42 chr3 107554794 107554914 -110482244 + L2 LINE L2 3132 3247 -25 21 57 0 0 chr3 107554957 107554992 -110482166 + AT_rich Low_complexity Low_complexity 1 35 0 201 225 0 0 chr3 107555406 107555446 -110481712 + L2 LINE L2 3229 3268 -4 283 261 43 99 chr3 107556752 107556913 -110480245 - MLT1I LTR MaLR 0 409 258 240 330 35 26 chr3 107556941 107557056 -110480102 - MLT1I LTR MaLR -263 146 31 621 277 86 16 chr3 107557098 107557376 -110479782 - L2 LINE L2 -251 3062 2767 195 185 0 111 chr3 107558022 107558076 -110479082 + MIR SINE MIR 110 157 -105 512 327 111 4 chr3 107558376 107558602 -110478556 + MIR SINE MIR 3 252 -10 223 264 169 34 chr3 107558778 107558956 -110478202 - L3b LINE CR1 -185 1398 1197 218 200 46 15 chr3 107559897 107559962 -110477196 + (TATATG)n Simple_repeat Simple_repeat 3 69 0 1391 123 20 76 chr3 107559970 107560221 -110476937 - Tigger2a DNA MER2_type -1 443 207 21 0 0 0 chr3 107560224 107560245 -110476913 + AT_rich Low_complexity Low_complexity 1 21 0 845 119 0 17 chr3 107560262 107560380 -110476778 + AluJb SINE Alu 2 117 -195 877 169 0 40 chr3 107560383 107560560 -110476598 - Tigger2a DNA MER2_type -214 220 51 2246 96 0 0 chr3 107560590 107560872 -110476286 + AluSg1 SINE Alu 1 282 -27 285 100 0 0 chr3 107560872 107560922 -110476236 + (CTAA)n Simple_repeat Simple_repeat 3 52 0 829 188 30 79 chr3 107560922 107561148 -110476010 - MER8 DNA MER2_type -1 344 1 356 267 137 12 chr3 107561332 107561493 -110475665 + L1ME LINE L1 5259 5439 -682 313 288 153 12 chr3 107561507 107561670 -110475488 + MIR SINE MIR 20 205 -57 363 240 20 0 chr3 107561881 107561981 -110475177 - L1ME LINE L1 -5443 627 526 792 235 5 5 chr3 107562620 107562820 -110474338 - L1 LINE L1 -1566 4580 4381 1233 97 0 6 chr3 107562820 107562982 -110474176 + L1PA15 LINE L1 5986 6160 -5 1392 259 48 54 chr3 107562990 107563692 -110473466 + L1MDa LINE L1 1011 1708 -4832 * 6147 232 59 54 chr3 107563679 107563771 -110473387 + L1MDa LINE L1 2459 2549 -3991 2606 47 0 0 chr3 107563771 107564068 -110473090 + AluSg SINE Alu 1 297 -13 6147 232 59 54 chr3 107564068 107564848 -110472310 + L1MDa LINE L1 2549 3324 -3216 316 146 0 0 chr3 107564848 107564903 -110472255 + U5 snRNA snRNA 1 55 -61 6147 232 59 54 chr3 107564903 107566358 -110470800 + L1MDa LINE L1 3324 4796 -1744 2235 91 7 3 chr3 107566912 107567220 -110469938 - AluY SINE Alu 0 311 3 6499 56 6 5 chr3 107567225 107568050 -110469108 - L1PA8 LINE L1 -3 6169 5344 541 323 0 13 chr3 107568050 107568205 -110468953 + MIR3 SINE MIR 42 194 -14 214 355 13 0 chr3 107568296 107568372 -110468786 + L2 LINE L2 3237 3313 0 1173 183 9 80 chr3 107568905 107569254 -110467904 + MER33 DNA MER1_type 1 324 0 370 297 0 27 chr3 107569293 107569404 -110467754 - MIR3 SINE MIR -6 202 95 395 86 0 0 chr3 107570131 107570189 -110466969 - L1MA1 LINE L1 0 6302 6245 2034 164 71 10 chr3 107570725 107571121 -110466037 - MSTB1 LTR MaLR -12 420 1 25 51 0 0 chr3 107572570 107572609 -110464549 + AT_rich Low_complexity Low_complexity 1 39 0 191 260 104 31 chr3 107573319 107573415 -110463743 - MIR SINE MIR -84 124 22 646 213 12 37 chr3 107573750 107573914 -110463244 - L2 LINE L2 -1 3312 3153 339 288 14 65 chr3 107573993 107574132 -110463026 - L2 LINE L2 -3150 164 33 325 289 48 42 chr3 107575398 107575564 -110461594 + LTR33 LTR ERVL 1 167 -354 351 239 51 8 chr3 107575623 107575740 -110461418 + LTR33 LTR ERVL 394 515 -6 184 247 134 31 chr3 107575978 107576075 -110461083 + L3 LINE CR1 266 372 -1205 408 297 67 38 chr3 107576781 107576990 -110460168 + MLT1L LTR MaLR 368 582 -33 387 275 29 4 chr3 107577023 107577143 -110460015 - MIR SINE MIR -62 146 46 2032 133 7 7 chr3 107579520 107579820 -110457338 + AluSx SINE Alu 1 300 -12 276 162 15 29 chr3 107580211 107580279 -110456879 + L1ME LINE L1 5756 5822 -299 261 26 0 0 chr3 107580376 107580415 -110456743 - L1MA3 LINE L1 0 6305 6267 204 67 0 0 chr3 107580729 107580759 -110456399 + (TAAAAA)n Simple_repeat Simple_repeat 1 30 0 215 313 109 62 chr3 107580802 107580930 -110456228 - L3 LINE CR1 -137 1440 1307 365 258 43 0 chr3 107580934 107581027 -110456131 + MER33 DNA MER1_type 4 100 -224 933 163 45 9 chr3 107581102 107581323 -110455835 + MER33 DNA MER1_type 95 323 -1 188 250 23 0 chr3 107581433 107581477 -110455681 + L2 LINE L2 3255 3299 -14 3584 148 18 49 chr3 107582074 107582790 -110454368 + L1MB1 LINE L1 5475 6168 0 185 279 0 66 chr3 107584602 107584663 -110452495 - L3 LINE CR1 -32 1545 1489 457 97 234 2 chr3 107584839 107584946 -110452212 - L1PA13 LINE L1 -60 6094 5980 284 0 0 0 chr3 107585046 107585079 -110452079 - L1P4 LINE L1 -597 5571 5539 182 317 148 28 chr3 107585081 107585223 -110451935 - L3 LINE CR1 -372 1205 1047 743 222 175 112 chr3 107585496 107585872 -110451286 - HAL1 LINE L1 -996 1511 1160 1337 221 12 75 chr3 107585872 107586240 -110450918 - MLT1B LTR MaLR 0 390 49 2398 74 3 0 chr3 107586240 107586539 -110450619 + AluY SINE Alu 1 300 -11 1337 221 12 75 chr3 107586539 107586586 -110450572 - MLT1B LTR MaLR -341 49 1 743 222 175 112 chr3 107586586 107586953 -110450205 - HAL1 LINE L1 -1347 1160 721 505 274 89 17 chr3 107588712 107588891 -110448267 + MIR SINE MIR 47 238 -24 4803 85 42 14 chr3 107589922 107590638 -110446520 + L1PB3 LINE L1 5418 6153 -1 394 355 103 17 chr3 107591562 107591796 -110445362 - MIR SINE MIR -6 256 3 514 339 49 44 chr3 107592430 107592817 -110444341 + L2 LINE L2 2311 2699 -615 378 130 14 0 chr3 107592824 107592893 -110444265 - L1MB2 LINE L1 -3 6168 6099 1000 132 11 6 chr3 107592908 107593082 -110444076 - L1MB2 LINE L1 -288 5895 5721 718 137 6 37 chr3 107593069 107593230 -110443928 - L1MB2 LINE L1 -738 5442 5287 * 365 302 42 47 chr3 107593333 107593548 -110443610 - L1MEd LINE L1 -3726 2403 2190 2437 76 0 0 chr3 107593575 107593879 -110443279 - AluY SINE Alu -7 304 1 21 36 0 0 chr3 107594237 107594265 -110442893 + AT_rich Low_complexity Low_complexity 1 28 0 7393 18 1 2 chr3 107594416 107595319 -110441839 - L1PA3 LINE L1 0 6155 5254 1191 121 18 0 chr3 107595325 107595490 -110441668 - AluSg SINE Alu -142 168 1 301 369 41 37 chr3 107595490 107595659 -110441499 - HAL1 LINE L1 -868 1639 1467 3279 124 52 2 chr3 107595659 107596159 -110440999 + MER1A DNA MER1_type 3 527 0 301 369 41 37 chr3 107596159 107596233 -110440925 - HAL1 LINE L1 -1040 1467 1395 380 267 95 22 chr3 107596274 107596506 -110440652 - L1MEd LINE L1 -4886 1233 985 1249 167 75 48 chr3 107596905 107597198 -110439960 + MLT1C LTR MaLR 142 442 -25 398 281 170 90 chr3 107597687 107598075 -110439083 + L2 LINE L2 2853 3271 -1 1421 157 66 41 chr3 107598317 107598635 -110438523 - MLT1C LTR MaLR 0 467 142 240 86 0 0 chr3 107600161 107600196 -110436962 + (CA)n Simple_repeat Simple_repeat 2 36 0 1014 223 65 68 chr3 107600210 107600798 -110436360 + L1MC5 LINE L1 7328 7913 -48 37 23 0 0 chr3 107601359 107601403 -110435755 + AT_rich Low_complexity Low_complexity 1 44 0 26 64 0 0 chr3 107601711 107601758 -110435400 + AT_rich Low_complexity Low_complexity 1 47 0 302 258 81 3 chr3 107601811 107602000 -110435158 - MER112 DNA MER1_type -1 259 1 557 194 0 10 chr3 107602799 107602902 -110434256 + FLAM_A SINE Alu 23 124 -18 25 51 0 0 chr3 107604915 107604954 -110432204 + AT_rich Low_complexity Low_complexity 1 39 0 312 316 120 7 chr3 107605373 107605664 -110431494 - L1MC/D LINE L1 -2169 5639 5316 29 28 0 0 chr3 107605679 107605715 -110431443 + AT_rich Low_complexity Low_complexity 1 36 0 30 45 0 0 chr3 107606511 107606555 -110430603 + AT_rich Low_complexity Low_complexity 1 44 0 2406 74 7 0 chr3 107606913 107607212 -110429946 - AluSc SINE Alu -8 301 1 23 0 0 0 chr3 107607288 107607311 -110429847 + AT_rich Low_complexity Low_complexity 1 23 0 2420 148 26 16 chr3 107607772 107608199 -110428959 - MSTB1 LTR MaLR -1 431 1 1264 284 78 26 chr3 107608487 107609110 -110428048 + L2 LINE L2 2651 3306 -7 210 350 142 25 chr3 107609091 107609211 -110427947 - L2 LINE L2 -12 3260 3127 * 2692 139 142 50 chr3 107609567 107609594 -110427564 + L1MB2 LINE L1 5451 5474 -697 243 0 0 0 chr3 107609594 107609621 -110427537 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2692 139 142 50 chr3 107609621 107609738 -110427420 + L1MB2 LINE L1 5474 5579 -592 2140 127 0 7 chr3 107609738 107610038 -110427120 + AluSq SINE Alu 1 298 -15 2692 139 142 50 chr3 107610038 107610083 -110427075 + L1MB2 LINE L1 5579 5618 -553 2560 134 44 2 chr3 107610083 107610494 -110426664 + MSTA LTR MaLR 1 428 0 2692 139 142 50 chr3 107610494 107610629 -110426529 + L1MB2 LINE L1 5618 5739 -432 243 0 0 0 chr3 107610629 107610656 -110426502 + (CA)n Simple_repeat Simple_repeat 2 28 0 2692 139 142 50 chr3 107610656 107610981 -110426177 + L1MB2 LINE L1 5739 6163 -8 381 281 56 25 chr3 107611600 107611760 -110425398 + MIR SINE MIR 93 257 -5 198 348 22 30 chr3 107611856 107611991 -110425167 - L2 LINE L2 -585 2729 2596 4458 149 34 29 chr3 107612313 107613171 -110423987 + MER6 DNA MER2_type 4 865 0 3095 173 20 2 chr3 107613847 107614063 -110423095 - L1P LINE L1 -1521 4625 4414 333 68 0 0 chr3 107614063 107614107 -110423051 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 3095 173 20 2 chr3 107614107 107614491 -110422667 - L1P LINE L1 -1732 4414 4014 2120 110 75 20 chr3 107614491 107614836 -110422322 - THE1B LTR MaLR 0 364 1 11979 92 3 0 chr3 107614836 107616411 -110420747 - THE1B-int LTR MaLR 0 1580 1 2189 118 39 36 chr3 107616411 107616774 -110420384 - THE1B LTR MaLR 0 364 1 6033 91 13 22 chr3 107616781 107617488 -110419670 + L1PA14 LINE L1 4648 5360 -801 2585 105 16 5 chr3 107617488 107617859 -110419299 - THE1C LTR MaLR 0 375 1 6033 91 13 22 chr3 107617859 107618672 -110418486 + L1PA14 LINE L1 5360 6161 0 2675 103 0 0 chr3 107618672 107619073 -110418085 + L1PA13 LINE L1 5769 6175 0 329 43 0 0 chr3 107619835 107619881 -110417277 - L1PA6 LINE L1 0 6154 6109 640 211 151 81 chr3 107619968 107620266 -110416892 - MER46C DNA MER2_type -18 320 2 230 220 85 85 chr3 107621060 107621178 -110415980 - MLT1J2 LTR MaLR -67 383 266 40694 53 3 0 chr3 107621238 107627368 -110409790 - L1PA5 LINE L1 -4 6150 1 26 0 0 0 chr3 107627507 107627533 -110409625 + AT_rich Low_complexity Low_complexity 1 26 0 1887 163 0 4 chr3 107627899 107628176 -110408982 + AluSx SINE Alu 2 277 -35 911 57 0 8 chr3 107628176 107628299 -110408859 + (GGAA)n Simple_repeat Simple_repeat 3 124 0 264 122 0 0 chr3 107628832 107628873 -110408285 + (A)n Simple_repeat Simple_repeat 1 41 0 1533 184 10 33 chr3 107628878 107629177 -110407981 + AluJo SINE Alu 1 292 -20 750 347 66 44 chr3 107629910 107630041 -110407117 + L3 LINE CR1 117 244 -1333 765 204 0 0 chr3 107630041 107630173 -110406985 + FLAM_C SINE Alu 1 132 -1 750 347 66 44 chr3 107630173 107630629 -110406529 + L3 LINE CR1 244 717 -860 291 305 106 35 chr3 107631194 107631335 -110405823 + MIR3 SINE MIR 58 208 0 22 0 0 0 chr3 107631382 107631404 -110405754 + AT_rich Low_complexity Low_complexity 1 22 0 238 345 82 25 chr3 107633007 107633288 -110403870 + L2 LINE L2 456 752 -2562 247 299 174 21 chr3 107633930 107634171 -110402987 + L2 LINE L2 1628 1905 -1409 236 204 51 41 chr3 107634193 107634291 -110402867 + L1ME LINE L1 5812 5910 -211 724 270 17 0 chr3 107634579 107634753 -110402405 + MER45A DNA AcHobo 1 177 -1 263 289 241 28 chr3 107634756 107635047 -110402111 + L2 LINE L2 2007 2359 -955 674 258 197 22 chr3 107635058 107635515 -110401643 - L1ME2 LINE L1 -258 5906 5354 322 274 21 21 chr3 107636592 107636687 -110400471 - MIR SINE MIR 0 262 168 1642 235 52 38 chr3 107636717 107637296 -110399862 - L1ME1 LINE L1 -2 6233 5647 1665 214 118 13 chr3 107637297 107637745 -110399413 - MLT1D LTR MaLR -10 495 1 3217 229 76 10 chr3 107637745 107639035 -110398123 - L1ME1 LINE L1 -591 5644 4225 297 202 17 17 chr3 107639042 107639161 -110397997 - L1ME1 LINE L1 -3135 3080 2962 2519 223 55 17 chr3 107639190 107640277 -110396881 - L1ME1 LINE L1 -3231 2984 1906 1122 247 109 68 chr3 107640314 107640900 -110396258 - MLT1E3 LTR MaLR -15 609 2 4303 244 60 19 chr3 107640900 107641735 -110395423 - L1ME1 LINE L1 -4484 1912 990 852 210 0 0 chr3 107641735 107641892 -110395266 - FRAM SINE Alu -9 157 1 4303 244 60 19 chr3 107641892 107642527 -110394631 - L1ME1 LINE L1 -5406 990 382 460 324 161 44 chr3 107643596 107644687 -110392471 + L2 LINE L2 1758 2976 -338 224 292 62 0 chr3 107645551 107645616 -110391542 - L2 LINE L2 0 3272 3204 933 297 91 16 chr3 107647602 107648273 -110388885 + HAL1 LINE L1 619 1339 -1168 347 195 71 44 chr3 107648299 107648374 -110388784 + L1MCc LINE L1 23 103 -6320 1493 173 11 93 chr3 107648374 107648847 -110388311 - MER57B LTR ERV1 0 434 1 347 195 71 44 chr3 107648847 107648884 -110388274 + L1MCc LINE L1 103 138 -6285 288 232 14 0 chr3 107649676 107649745 -110387413 + L1MCc LINE L1 360 429 -5994 242 367 19 13 chr3 107649884 107650042 -110387116 + L1MCc LINE L1 971 1129 -5294 759 297 68 56 chr3 107650154 107650562 -110386596 + L1MCc LINE L1 940 1359 -5064 1595 160 41 110 chr3 107650562 107650981 -110386177 + MLT1B LTR MaLR 1 390 0 759 297 68 56 chr3 107650981 107651162 -110385996 + L1MCc LINE L1 1359 1536 -4887 277 256 0 11 chr3 107651267 107651357 -110385801 + L1MCc LINE L1 3261 3349 -3592 634 333 77 15 chr3 107651358 107651694 -110385464 + MLT2F LTR ERVL 17 373 -290 259 360 5 56 chr3 107651832 107652046 -110385112 + MLT2F LTR ERVL 402 604 -59 1158 216 54 15 chr3 107652142 107652549 -110384609 + L1MCc LINE L1 3352 3774 -3167 520 222 119 31 chr3 107652616 107652976 -110384182 + L1MCc LINE L1 3857 4248 -2693 22 0 0 0 chr3 107652987 107653009 -110384149 + AT_rich Low_complexity Low_complexity 1 22 0 41650 44 3 5 chr3 107653009 107659160 -110377998 - L1PA4 LINE L1 -3 6152 3 446 211 47 166 chr3 107659266 107659332 -110377826 + L1MCc LINE L1 4582 4654 -2287 2234 91 21 0 chr3 107659332 107659617 -110377541 + AluSg SINE Alu 5 295 -15 446 211 47 166 chr3 107659617 107659930 -110377228 + L1MCc LINE L1 4654 4916 -2025 451 316 51 17 chr3 107659932 107660109 -110377049 - LTR16A LTR ERVL -267 183 1 524 278 33 56 chr3 107660413 107660719 -110376439 + L1MCc LINE L1 5362 5660 -1281 1020 322 19 6 chr3 107660894 107661293 -110375865 + HERV16 LTR ERVL 2807 3089 -1907 1110 217 123 48 chr3 107661665 107661998 -110375160 + MLT2D LTR ERVL 12 377 -37 710 37 28 9 chr3 107661998 107662105 -110375053 + (TAGA)n Simple_repeat Simple_repeat 4 112 0 1110 217 123 48 chr3 107662105 107662144 -110375014 + MLT2D LTR ERVL 377 412 -2 1506 276 68 10 chr3 107662148 107662659 -110374499 + ERVL LTR ERVL 2 542 -5222 441 333 24 0 chr3 107662655 107662820 -110374338 - HERVL LTR ERVL -2679 2975 2807 * 209 57 29 0 chr3 107663035 107663070 -110374088 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 629 239 0 0 chr3 107663073 107663190 -110373968 - FLAM_C SINE Alu -26 117 1 16182 187 34 11 chr3 107663303 107665323 -110371835 + ERVL LTR ERVL 508 2746 -3018 2002 158 0 7 chr3 107665323 107665627 -110371531 - AluSx SINE Alu -10 302 1 16182 187 34 11 chr3 107665627 107666853 -110370305 + ERVL LTR ERVL 2746 3942 -1822 190 313 67 52 chr3 107666853 107666987 -110370171 + L2 LINE L2 3178 3313 0 328 322 157 18 chr3 107666999 107667285 -110369873 + L2 LINE L2 1835 2160 -1154 1373 81 19 5 chr3 107668969 107669179 -110367979 - L1MA8 LINE L1 -6 6285 6073 221 306 16 0 chr3 107669190 107669252 -110367906 + L2 LINE L2 3246 3308 -5 422 148 0 236 chr3 107669455 107669637 -110367521 - MLT1D LTR MaLR 0 505 367 829 174 0 0 chr3 107669638 107669770 -110367388 + FLAM_C SINE Alu 1 132 -11 1313 180 56 85 chr3 107669772 107670150 -110367008 - MLT1D LTR MaLR -119 386 20 262 281 0 16 chr3 107672457 107672521 -110364637 + L2 LINE L2 3210 3272 0 220 103 0 0 chr3 107674559 107674588 -110362570 + (A)n Simple_repeat Simple_repeat 1 29 0 2185 120 24 21 chr3 107674905 107675279 -110361879 - THE1C LTR MaLR 0 375 1 246 32 0 0 chr3 107676161 107676192 -110360966 + (CA)n Simple_repeat Simple_repeat 2 32 0 180 338 54 14 chr3 107676258 107676332 -110360826 + L2 LINE L2 3149 3225 -47 820 205 37 82 chr3 107676792 107677036 -110360122 - L2 LINE L2 0 3313 3081 774 176 15 0 chr3 107678324 107678455 -110358703 - FLAM_C SINE Alu 0 133 1 234 150 0 0 chr3 107678874 107678914 -110358244 + (TG)n Simple_repeat Simple_repeat 2 41 0 29 28 0 0 chr3 107679139 107679175 -110357983 + AT_rich Low_complexity Low_complexity 1 36 0 34 34 0 17 chr3 107679430 107679473 -110357685 + AT_rich Low_complexity Low_complexity 1 44 -14 2201 108 0 7 chr3 107679473 107679759 -110357399 + AluSx SINE Alu 9 292 -20 34 34 0 17 chr3 107679759 107679774 -110357384 + AT_rich Low_complexity Low_complexity 44 58 0 221 250 0 0 chr3 107680226 107680278 -110356880 + L2 LINE L2 2716 2767 -547 1617 160 25 70 chr3 107680682 107680770 -110356388 - MER2 DNA MER2_type -2 343 253 858 20 0 0 chr3 107680770 107680872 -110356286 - L1PA2 LINE L1 0 6155 6054 1617 160 25 70 chr3 107680872 107681140 -110356018 - MER2 DNA MER2_type -92 253 3 411 21 0 0 chr3 107681582 107681630 -110355528 + (TG)n Simple_repeat Simple_repeat 2 49 0 233 291 52 67 chr3 107681630 107681764 -110355394 + L2 LINE L2 3139 3270 -2 754 255 77 21 chr3 107682113 107682348 -110354810 + MIR SINE MIR 2 249 -13 244 295 122 26 chr3 107683786 107683942 -110353216 - MIR3 SINE MIR 0 208 38 1557 124 0 4 chr3 107684274 107684508 -110352650 + L1PA14 LINE L1 5920 6152 -9 3240 88 23 15 chr3 107685218 107685694 -110351464 + L1PA14 LINE L1 5682 6161 0 192 133 72 0 chr3 107685837 107685920 -110351238 + (TA)n Simple_repeat Simple_repeat 1 89 0 54 50 0 10 chr3 107685923 107686009 -110351149 + AT_rich Low_complexity Low_complexity 1 87 -12 2255 101 0 0 chr3 107686009 107686295 -110350863 - AluSc SINE Alu -23 286 1 54 50 0 10 chr3 107686295 107686308 -110350850 + AT_rich Low_complexity Low_complexity 87 99 0 355 269 60 50 chr3 107686314 107686496 -110350662 + L1ME LINE L1 5595 5778 -343 202 268 54 18 chr3 107686621 107686677 -110350481 - MER5A DNA MER1_type -87 102 45 312 276 10 10 chr3 107686806 107686904 -110350254 + GA-rich Low_complexity Low_complexity 3 100 0 301 307 52 20 chr3 107687291 107687444 -110349714 + L1MC4a LINE L1 4303 4460 -1686 309 211 0 133 chr3 107687744 107687910 -110349248 + L1MC4a LINE L1 5130 5273 -873 417 254 229 54 chr3 107688014 107688219 -110348939 - MIR SINE MIR -10 252 12 314 253 112 20 chr3 107688231 107688505 -110348653 + L1MC4a LINE L1 5371 5674 -679 574 242 6 6 chr3 107688568 107688733 -110348425 + L1MC4a LINE L1 5684 5848 -1960 234 173 24 51 chr3 107688730 107688817 -110348341 + L1MC4a LINE L1 5508 5561 -605 * 1037 154 32 32 chr3 107688819 107689039 -110348119 - MER34 LTR ERV1 0 542 323 620 152 88 0 chr3 107689142 107689267 -110347891 - MER34 LTR ERV1 -380 162 27 566 238 37 150 chr3 107689278 107689657 -110347501 + L1MC4a LINE L1 5587 5922 -1886 22 35 0 0 chr3 107689978 107690007 -110347151 + AT_rich Low_complexity Low_complexity 1 29 0 264 59 0 0 chr3 107690170 107690204 -110346954 + (TATG)n Simple_repeat Simple_repeat 3 36 0 512 258 84 39 chr3 107690237 107690415 -110346743 + MIR3 SINE MIR 23 208 0 4941 130 12 16 chr3 107691040 107691877 -110345281 - L1PA16 LINE L1 -16 6150 5317 * 5900 73 13 13 chr3 107691872 107692708 -110344450 - L1PA10 LINE L1 0 6168 5333 284 340 19 9 chr3 107693002 107693108 -110344050 + MIR SINE MIR 21 127 -81 540 267 108 67 chr3 107693316 107693518 -110343640 + MIR SINE MIR 8 223 -39 2377 98 3 0 chr3 107693518 107693825 -110343333 + AluSx SINE Alu 1 308 -4 540 267 108 67 chr3 107693825 107693862 -110343296 + MIR SINE MIR 223 257 -5 261 347 116 0 chr3 107694338 107694459 -110342699 + L2 LINE L2 3134 3268 -4 288 250 174 22 chr3 107694692 107694784 -110342374 + MIR SINE MIR 16 121 -87 189 325 50 12 chr3 107694857 107694937 -110342221 - MIR SINE MIR -112 150 68 709 85 0 0 chr3 107695408 107695502 -110341656 + AluSx SINE Alu 43 136 -177 2084 124 3 20 chr3 107695502 107695808 -110341350 + AluSg SINE Alu 1 301 -9 25686 113 11 17 chr3 107695811 107699999 -110337159 + L1P LINE L1 12 4176 -1970 3132 66 5 7 chr3 107699999 107700414 -110336744 + L1PA6 LINE L1 5732 6153 -1 1161 130 6 0 chr3 107700421 107700590 -110336568 + AluSx SINE Alu 131 300 -12 766 111 15 9 chr3 107700790 107700986 -110336172 - L1MB7 LINE L1 -46 6138 5879 636 75 0 0 chr3 107701399 107701479 -110335679 - AluS SINE Alu -231 82 3 520 314 41 6 chr3 107701482 107701651 -110335507 + MIR SINE MIR 88 262 0 653 294 99 30 chr3 107701952 107702346 -110334812 - LTR16B LTR ERVL 0 464 44 744 178 0 0 chr3 107703598 107703716 -110333442 + FLAM_C SINE Alu 1 118 -25 221 274 14 41 chr3 107703935 107704008 -110333150 - MIR SINE MIR -180 82 12 1608 156 54 104 chr3 107704093 107704574 -110332584 + MLT1C LTR MaLR 6 462 -5 370 254 40 17 chr3 107705092 107705269 -110331889 + L1M4 LINE L1 2132 2312 -3834 1075 303 40 34 chr3 107705286 107705332 -110331826 - LTR16C LTR ERVL -12 479 435 2450 138 20 54 chr3 107705332 107705775 -110331383 - MSTC LTR MaLR 0 428 1 1075 303 40 34 chr3 107705775 107706204 -110330954 - LTR16C LTR ERVL -56 435 1 835 250 5 0 chr3 107706262 107706462 -110330696 - L1PB4 LINE L1 -1 6155 5955 * 1176 219 35 0 chr3 107706445 107706756 -110330402 - L1PB4 LINE L1 -925 5221 4900 1033 265 111 3 chr3 107706761 107707345 -110329813 + L1M4 LINE L1 2387 3033 -3113 370 354 50 20 chr3 107707345 107707543 -110329615 + MIR SINE MIR 56 259 -3 956 200 0 0 chr3 107708071 107708236 -110328922 - FRAM SINE Alu -1 165 1 185 287 170 21 chr3 107708236 107708330 -110328828 - MIR SINE MIR -55 153 46 1992 169 18 110 chr3 107708444 107708793 -110328365 - MLT1D LTR MaLR 0 505 223 2026 114 40 0 chr3 107708793 107709113 -110328045 - AluSq SINE Alu 0 331 1 1992 169 18 110 chr3 107709113 107709318 -110327840 - MLT1D LTR MaLR -282 223 1 273 244 45 82 chr3 107709472 107709713 -110327445 + L1MC4 LINE L1 7548 7882 -160 2173 147 30 2 chr3 107709713 107710114 -110327044 + L1MA7 LINE L1 5874 6285 -6 273 244 45 82 chr3 107710114 107710205 -110326953 + L1MC4 LINE L1 7882 7975 -67 59 15 0 0 chr3 107710228 107710294 -110326864 + AT_rich Low_complexity Low_complexity 1 66 0 198 103 0 0 chr3 107711063 107711092 -110326066 + (TAGA)n Simple_repeat Simple_repeat 2 30 0 900 154 45 0 chr3 107711746 107711902 -110325256 - L1PA16 LINE L1 -9 6157 5995 665 104 47 9 chr3 107711926 107712032 -110325126 - HY1 scRNA scRNA -1 111 2 4245 159 30 42 chr3 107712086 107712873 -110324285 + L1MB4 LINE L1 5072 5842 -338 1789 142 8 4 chr3 107712873 107713141 -110324017 + AluJb SINE Alu 27 295 -17 4245 159 30 42 chr3 107713141 107713476 -110323682 + L1MB4 LINE L1 5842 6180 0 213 288 45 0 chr3 107713678 107713744 -110323414 - MIR SINE MIR -16 246 178 183 250 0 67 chr3 107714312 107714372 -110322786 - L3b LINE CR1 -356 1227 1172 369 250 9 103 chr3 107714407 107714477 -110322681 + MIR SINE MIR 39 95 -167 2150 108 0 0 chr3 107714477 107714790 -110322368 - AluSc SINE Alu 0 309 1 369 250 9 103 chr3 107714790 107714835 -110322323 + MIR SINE MIR 95 143 -119 937 272 13 0 chr3 107714861 107715096 -110322062 + MIR SINE MIR 23 260 -2 252 156 78 39 chr3 107715685 107715762 -110321396 + (CCCTG)n Simple_repeat Simple_repeat 1 80 0 1897 153 0 14 chr3 107717103 107717398 -110319760 + AluJb SINE Alu 5 295 -17 472 284 90 54 chr3 107717506 107717783 -110319375 - LTR16A LTR ERVL -4 453 146 2421 117 28 14 chr3 107717783 107718142 -110319016 - THE1B LTR MaLR 0 364 1 472 284 90 54 chr3 107718142 107718278 -110318880 - LTR16A LTR ERVL -311 146 16 4130 14 14 2 chr3 107719117 107719600 -110317558 + L1PA2 LINE L1 5667 6155 0 439 276 71 62 chr3 107719600 107719810 -110317348 + MIR SINE MIR 13 224 -38 287 171 124 62 chr3 107720170 107720262 -110316896 - Charlie2a DNA MER1_type -1850 1012 908 2180 98 3 14 chr3 107720262 107720557 -110316601 + AluSx SINE Alu 1 292 -20 287 171 124 62 chr3 107720557 107720593 -110316565 - Charlie2a DNA MER1_type -1954 908 876 356 350 57 13 chr3 107721982 107722139 -110315019 - MIR3 SINE MIR -5 203 40 208 252 28 84 chr3 107722124 107722231 -110314927 + MIR SINE MIR 102 202 -60 * 362 251 49 68 chr3 107722318 107722481 -110314677 + MIR SINE MIR 47 206 -56 200 109 0 65 chr3 107722566 107722612 -110314546 + (A)n Simple_repeat Simple_repeat 1 43 0 652 197 53 43 chr3 107722630 107722838 -110314320 - L1M4 LINE L1 -689 5495 5286 3772 70 14 6 chr3 107722941 107723453 -110313705 + L1PA7 LINE L1 5639 6154 0 2055 142 13 7 chr3 107723770 107724080 -110313078 + AluSx SINE Alu 1 312 0 511 271 138 39 chr3 107724289 107724492 -110312666 - MIR SINE MIR 0 262 40 344 281 84 18 chr3 107725105 107725272 -110311886 - L1M4 LINE L1 -850 5296 5119 530 162 54 27 chr3 107726308 107726445 -110310713 + FLAM_A SINE Alu 8 142 0 22 35 0 0 chr3 107726467 107726496 -110310662 + AT_rich Low_complexity Low_complexity 1 29 0 1774 161 0 24 chr3 107727940 107728275 -110308883 + MER47A DNA MER2_type 40 366 0 483 328 23 12 chr3 107729848 107730019 -110307139 - MIR SINE MIR -70 192 20 182 369 118 36 chr3 107730079 107730942 -110306216 - L2 LINE L2 -825 2489 1556 22 0 0 0 chr3 107731604 107731626 -110305532 + AT_rich Low_complexity Low_complexity 1 22 0 485 286 103 16 chr3 107731670 107731855 -110305303 - MIR SINE MIR -58 204 4 240 306 94 0 chr3 107732390 107732475 -110304683 - L2 LINE L2 -88 3184 3092 2509 84 3 0 chr3 107732716 107733027 -110304131 - AluSp SINE Alu -1 312 1 2826 3 0 0 chr3 107734282 107734587 -110302571 + AluYa5 SINE Alu 1 305 -6 2310 106 3 0 chr3 107734815 107735117 -110302041 - AluSp SINE Alu -10 303 1 248 270 59 33 chr3 107735368 107735520 -110301638 - Tigger7 DNA MER2_type -773 1714 1559 2340 96 0 0 chr3 107735537 107735838 -110301320 - AluSx SINE Alu -11 301 1 209 274 14 14 chr3 107735948 107736021 -110301137 + CT-rich Low_complexity Low_complexity 2 74 0 207 100 0 0 chr3 107736143 107736173 -110300985 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 622 267 100 55 chr3 107736330 107736750 -110300408 - L2 LINE L2 -249 3064 2622 213 39 0 0 chr3 107737356 107737382 -110299776 + (CA)n Simple_repeat Simple_repeat 1 26 0 1945 176 0 0 chr3 107737667 107737974 -110299184 - AluJo SINE Alu -5 307 1 189 107 0 0 chr3 107738073 107738101 -110299057 + (TATATG)n Simple_repeat Simple_repeat 2 29 0 331 324 57 0 chr3 107738369 107738474 -110298684 - L2 LINE L2 0 3313 3203 2201 97 10 19 chr3 107738856 107739166 -110297992 + AluSp SINE Alu 1 307 -6 1649 176 14 21 chr3 107739415 107739704 -110297454 + AluJo SINE Alu 1 287 -25 22 35 0 0 chr3 107739704 107739733 -110297425 + AT_rich Low_complexity Low_complexity 1 29 0 1579 251 65 45 chr3 107740190 107740741 -110296417 - MLT1G LTR MaLR 0 590 29 2086 142 0 3 chr3 107740750 107741053 -110296105 + AluSx SINE Alu 1 302 -10 280 294 20 14 chr3 107741415 107741561 -110295597 + L1P LINE L1 3588 3734 -2412 2354 82 3 0 chr3 107741765 107742056 -110295102 - AluSg SINE Alu -18 292 1 746 231 5 46 chr3 107742168 107742363 -110294795 + MER5A DNA MER1_type 3 189 0 2503 59 0 3 chr3 107743104 107743410 -110293748 - AluY SINE Alu -6 305 1 1091 221 15 115 chr3 107743453 107744000 -110293158 - HAL1 LINE L1 -113 2394 1903 29972 106 15 58 chr3 107744010 107750436 -110286722 + L1PA7 LINE L1 12 6154 0 267 321 79 14 chr3 107750452 107750592 -110286566 - HAL1 LINE L1 -601 1906 1758 1338 167 9 0 chr3 107750624 107750839 -110286319 - AluJb SINE Alu -84 228 12 3408 259 67 73 chr3 107750847 107751360 -110285798 - HAL1 LINE L1 -731 1776 1261 1992 113 25 103 chr3 107751360 107751767 -110285391 - THE1C LTR MaLR 0 375 1 3408 259 67 73 chr3 107751767 107753040 -110284118 - HAL1 LINE L1 -1246 1261 1 4244 125 19 1 chr3 107753135 107753832 -110283326 + L1MA5A LINE L1 5584 6292 -5 695 191 8 0 chr3 107753840 107753966 -110283192 + FLAM_A SINE Alu 1 127 -6 36 62 0 0 chr3 107753968 107754032 -110283126 + AT_rich Low_complexity Low_complexity 1 64 0 1652 161 58 6 chr3 107754089 107755068 -110282090 + L1MA9 LINE L1 5078 6310 -2 1158 278 100 20 chr3 107755068 107755618 -110281540 + L1ME3A LINE L1 5570 6163 -7 192 349 16 0 chr3 107755704 107755767 -110281391 + MIR SINE MIR 49 112 -150 410 221 134 16 chr3 107755789 107755916 -110281242 - L2 LINE L2 0 3313 3172 511 234 147 6 chr3 107755977 107756137 -110281021 + MER5A DNA MER1_type 4 189 0 465 319 147 0 chr3 107756783 107756940 -110280218 - MER5A DNA MER1_type -1 188 9 1957 169 0 13 chr3 107757076 107757389 -110279769 - AluJb SINE Alu -3 309 1 26 74 0 0 chr3 107757517 107757571 -110279587 + AT_rich Low_complexity Low_complexity 1 54 0 189 0 0 0 chr3 107757571 107757592 -110279566 + (T)n Simple_repeat Simple_repeat 1 21 0 30355 111 14 48 chr3 107757651 107758827 -110278331 + L1PA7 LINE L1 1 1215 -4939 231 61 0 0 chr3 107758827 107758860 -110278298 + (CAA)n Simple_repeat Simple_repeat 1 33 0 30355 111 14 48 chr3 107758860 107764063 -110273095 + L1PA7 LINE L1 1215 6154 0 2471 58 0 0 chr3 107764068 107764361 -110272797 + AluY SINE Alu 1 293 -18 4245 61 27 22 chr3 107764366 107764952 -110272206 + L1PA7 LINE L1 5566 6154 0 2055 142 13 7 chr3 107765269 107765579 -110271579 + AluSx SINE Alu 1 312 0 515 274 132 39 chr3 107765788 107765992 -110271166 - MIR SINE MIR 0 262 40 251 223 107 18 chr3 107766395 107766507 -110270651 + L1ME4a LINE L1 5964 6085 -36 21 0 0 0 chr3 107766531 107766552 -110270606 + AT_rich Low_complexity Low_complexity 1 21 0 621 251 46 80 chr3 107767726 107767965 -110269193 + MIR SINE MIR 18 248 -14 270 56 0 0 chr3 107767977 107768013 -110269145 + (TG)n Simple_repeat Simple_repeat 2 37 0 1528 186 51 72 chr3 107768260 107768690 -110268468 - MER67D LTR ERV1 -4 510 90 631 126 0 10 chr3 107768743 107768846 -110268312 - MER67D LTR ERV1 -412 102 1 400 234 0 13 chr3 107770857 107770976 -110266182 + L1ME1 LINE L1 4890 5003 -1143 2736 173 24 32 chr3 107770981 107771267 -110265891 + L1ME1 LINE L1 5139 5426 -740 1960 167 13 0 chr3 107771267 107771567 -110265591 - AluJb SINE Alu -8 304 1 2736 173 24 32 chr3 107771567 107771864 -110265294 + L1ME1 LINE L1 5426 5716 -450 1874 133 72 33 chr3 107771864 107772224 -110264934 + THE1C LTR MaLR 1 374 -1 2736 173 24 32 chr3 107772224 107772341 -110264817 + L1ME1 LINE L1 5716 5832 -334 487 186 0 0 chr3 107772384 107772470 -110264688 + Tigger5 DNA MER2_type 2237 2322 -1 303 233 0 0 chr3 107772483 107772543 -110264615 + L1MB8 LINE L1 4945 5004 -1142 1219 194 110 22 chr3 107772600 107772919 -110264239 + L1MB8 LINE L1 5831 6177 -1 456 221 63 55 chr3 107773104 107773231 -110263927 + FRAM SINE Alu 21 148 -28 1727 129 0 0 chr3 107773259 107773499 -110263659 + L1PB1 LINE L1 5910 6149 -2 1837 173 3 13 chr3 107773529 107773842 -110263316 + AluJo SINE Alu 1 310 -2 1690 170 134 36 chr3 107773847 107774206 -110262952 - MSTD LTR MaLR -2 394 1 4783 130 35 52 chr3 107775339 107775655 -110261503 + L1MB2 LINE L1 5271 5591 -580 2495 49 7 13 chr3 107775655 107775960 -110261198 + AluY SINE Alu 1 303 -8 4783 130 35 52 chr3 107775960 107776550 -110260608 + L1MB2 LINE L1 5591 6169 -2 198 317 57 81 chr3 107777384 107777630 -110259528 + L2 LINE L2 1377 1616 -1698 495 121 60 0 chr3 107777633 107777749 -110259409 + (CATATA)n Simple_repeat Simple_repeat 1 123 0 250 191 0 48 chr3 107777752 107777815 -110259343 - L1MCa LINE L1 -4361 2065 2006 408 183 65 18 chr3 107777824 107777993 -110259165 + (CATATA)n Simple_repeat Simple_repeat 3 179 0 274 132 0 73 chr3 107778035 107778103 -110259055 + LTR57-int LTR ERVL 880 942 -4401 293 145 14 43 chr3 107778121 107778190 -110258968 + LTR57-int LTR ERVL 883 949 -4394 630 135 43 0 chr3 107778190 107778331 -110258827 + (CATATA)n Simple_repeat Simple_repeat 4 150 0 180 0 0 0 chr3 107778345 107778365 -110258793 + (CA)n Simple_repeat Simple_repeat 2 21 0 22 35 0 0 chr3 107778385 107778414 -110258744 + AT_rich Low_complexity Low_complexity 1 29 0 1264 142 76 2 chr3 107778437 107778835 -110258323 + LTR54 LTR ERV1 8 510 0 2215 127 0 0 chr3 107778881 107779181 -110257977 - AluSg SINE Alu -10 300 1 262 292 93 40 chr3 107779246 107779472 -110257686 + L2 LINE L2 1871 2108 -1206 2305 102 3 0 chr3 107779537 107779832 -110257326 + AluSx SINE Alu 3 298 -14 374 302 57 31 chr3 107779880 107780039 -110257119 - MER5B DNA MER1_type 0 178 16 1232 202 87 7 chr3 107780150 107780427 -110256731 - AluJo SINE Alu 0 312 14 194 313 100 0 chr3 107781652 107781732 -110255426 + L3 LINE CR1 1277 1364 -213 1921 147 10 10 chr3 107782115 107782427 -110254731 + AluJo SINE Alu 1 312 0 7625 53 6 2 chr3 107782946 107784060 -110253098 + L1PA6 LINE L1 5042 6154 0 250 306 57 102 chr3 107785206 107785578 -110251580 + L2 LINE L2 2501 2855 -459 246 343 66 82 chr3 107785614 107785979 -110251179 + L2 LINE L2 2914 3272 0 299 287 56 0 chr3 107786014 107786122 -110251036 - MIR SINE MIR -108 154 41 1649 261 134 10 chr3 107786279 107786755 -110250403 - MLT1G1 LTR MaLR -5 590 55 931 167 0 0 chr3 107786931 107787063 -110250095 + FLAM_C SINE Alu 1 132 -1 2160 79 17 7 chr3 107787827 107788143 -110249015 + AluY SINE Alu 1 311 0 311 161 71 0 chr3 107788221 107788277 -110248881 + MARNA DNA Mariner 507 566 -20 1691 165 14 21 chr3 107788444 107788735 -110248423 + AluJo SINE Alu 2 290 -22 23 0 0 0 chr3 107789145 107789168 -110247990 + AT_rich Low_complexity Low_complexity 1 23 0 219 314 14 0 chr3 107790537 107790607 -110246551 - MIR SINE MIR -120 142 72 2008 138 17 0 chr3 107790940 107791236 -110245922 + AluSx SINE Alu 1 301 -11 23 33 0 0 chr3 107791614 107791644 -110245514 + AT_rich Low_complexity Low_complexity 1 30 0 439 333 0 43 chr3 107792335 107792497 -110244661 + MER5A DNA MER1_type 35 189 0 447 307 95 73 chr3 107793509 107793877 -110243281 - L2 LINE L2 0 3272 2897 593 192 66 77 chr3 107794449 107794631 -110242527 + L1ME1 LINE L1 5969 6148 -18 434 290 130 0 chr3 107794730 107794861 -110242297 - L2 LINE L2 -1 3312 3165 1408 175 0 0 chr3 107795138 107795355 -110241803 - AluJo SINE Alu -14 298 82 262 247 82 12 chr3 107795423 107795508 -110241650 + MIR SINE MIR 172 262 0 659 351 14 4 chr3 107795768 107796047 -110241111 + L1MEc LINE L1 35 316 -6080 2192 103 36 0 chr3 107796418 107796720 -110240438 - AluSq SINE Alu 0 313 1 631 273 65 64 chr3 107796870 107797100 -110240058 + L1MEc LINE L1 666 894 -5219 2131 96 4 0 chr3 107797100 107797409 -110239749 - AluSp SINE Alu 0 322 13 631 273 65 64 chr3 107797409 107797812 -110239346 + L1MEc LINE L1 894 1153 -4960 * 3149 203 76 32 chr3 107797803 107798448 -110238710 + L1ME2 LINE L1 5186 5881 -283 2394 58 3 29 chr3 107798448 107798760 -110238398 + AluY SINE Alu 1 304 -7 3149 203 76 32 chr3 107798760 107799021 -110238137 + L1ME2 LINE L1 5881 6129 -35 1815 120 147 23 chr3 107799432 107799732 -110237426 + MER1B DNA MER1_type 1 337 0 2263 116 0 3 chr3 107799921 107800232 -110236926 + AluSg SINE Alu 1 310 0 2292 188 111 32 chr3 107800438 107800971 -110236187 - MLT1E2 LTR MaLR 0 626 52 1475 159 43 12 chr3 107801125 107801383 -110235775 + AluJo SINE Alu 9 274 -38 232 132 0 38 chr3 107801386 107801439 -110235719 + (AGGGGG)n Simple_repeat Simple_repeat 6 56 0 318 167 22 22 chr3 107801440 107801530 -110235628 + GA-rich Low_complexity Low_complexity 4 93 0 346 249 142 20 chr3 107802038 107802235 -110234923 + L1MC5 LINE L1 7705 7925 -36 491 205 8 43 chr3 107802599 107802716 -110234442 - FRAM SINE Alu -66 110 1 413 141 272 0 chr3 107804094 107804186 -110232972 + L1MB1 LINE L1 6051 6167 -1 1099 223 70 100 chr3 107804298 107804386 -110232772 + MLT1C LTR MaLR 24 113 -354 2269 116 0 0 chr3 107804386 107804687 -110232471 + AluSx SINE Alu 1 301 -11 1656 120 64 0 chr3 107804687 107804921 -110232237 + AluSx SINE Alu 1 249 -63 1099 223 70 100 chr3 107804921 107805289 -110231869 + MLT1C LTR MaLR 111 467 0 411 270 119 44 chr3 107805540 107805699 -110231459 - MER5A DNA MER1_type -9 180 10 2177 112 3 7 chr3 107805854 107806149 -110231009 + AluSx SINE Alu 1 294 -18 310 321 9 47 chr3 107806354 107806460 -110230698 - L2 LINE L2 -8 3264 3163 442 283 66 0 chr3 107807052 107807158 -110230000 - L2 LINE L2 0 3272 3160 275 201 69 144 chr3 107807179 107807353 -110229805 - MER117 DNA MER1_type -30 167 7 204 97 0 0 chr3 107807668 107807699 -110229459 + (CA)n Simple_repeat Simple_repeat 1 31 0 24 0 0 0 chr3 107808699 107808723 -110228435 + AT_rich Low_complexity Low_complexity 1 24 0 1785 162 17 0 chr3 107809038 107809334 -110227824 + AluJo SINE Alu 1 301 -11 307 240 0 62 chr3 107811602 107811698 -110225460 - MIR SINE MIR 0 262 173 190 306 32 16 chr3 107812564 107812626 -110224532 + L2 LINE L2 3006 3068 -204 2411 71 0 0 chr3 107813193 107813488 -110223670 + AluY SINE Alu 1 295 -16 461 265 88 0 chr3 107815182 107815318 -110221840 - MIR SINE MIR -34 228 81 345 303 74 8 chr3 107817093 107817215 -110219943 - L2 LINE L2 0 3313 3184 27 29 0 0 chr3 107819774 107819808 -110217350 + GC_rich Low_complexity Low_complexity 1 34 0 23 68 0 0 chr3 107820366 107820410 -110216748 + GC_rich Low_complexity Low_complexity 1 44 0 1884 68 0 4 chr3 107821009 107821244 -110215914 - AluY SINE Alu -77 234 1 6145 180 53 66 chr3 107821245 107822776 -110214382 + Charlie1 DNA MER1_type 909 2418 -343 1694 172 0 33 chr3 107822776 107823078 -110214080 - AluJo SINE Alu -20 292 1 6145 180 53 66 chr3 107823078 107823194 -110213964 + Charlie1 DNA MER1_type 2418 2534 -227 23 68 0 0 chr3 107823194 107823238 -110213920 + AT_rich Low_complexity Low_complexity 1 44 0 1452 79 11 143 chr3 107823522 107823787 -110213371 + MER30 DNA MER1_type 1 230 0 1985 170 20 0 chr3 107825518 107825859 -110211299 + MER7A DNA MER2_type 1 346 0 2986 159 38 4 chr3 107826050 107826553 -110210605 + MLT2B1 LTR ERVL 1 520 0 955 206 133 8 chr3 107827017 107827265 -110209893 + MLT1F LTR MaLR 188 466 -76 1423 201 21 12 chr3 107827362 107827691 -110209467 + Charlie1 DNA MER1_type 582 913 -1848 1572 147 0 33 chr3 107827699 107827944 -110209214 + AluJo SINE Alu 1 237 -75 275 237 59 96 chr3 107828051 107828160 -110208998 + Charlie1 DNA MER1_type 2309 2420 -341 1389 218 0 33 chr3 107828160 107828463 -110208695 - AluJo SINE Alu -19 293 1 275 237 59 96 chr3 107828463 107828623 -110208535 + Charlie1 DNA MER1_type 2420 2568 -193 1499 72 11 143 chr3 107828907 107829172 -110207986 + MER30 DNA MER1_type 1 230 0 21 0 0 0 chr3 107829935 107829956 -110207202 + AT_rich Low_complexity Low_complexity 1 21 0 336 322 11 11 chr3 107830090 107830180 -110206978 - L2 LINE L2 -27 3245 3156 654 158 69 37 chr3 107832976 107833178 -110203980 + MER58 DNA MER1_type 1 2420 0 493 294 94 0 chr3 107833233 107833413 -110203745 + MIR SINE MIR 60 256 -6 438 139 13 0 chr3 107834096 107834175 -110202983 - AluJ/FRAM SINE Alu -1 311 232 778 273 83 8 chr3 107835020 107835273 -110201885 - L2 LINE L2 -4 3309 3038 1947 139 36 33 chr3 107835822 107836211 -110200947 + MLT1B LTR MaLR 1 390 0 469 322 100 22 chr3 107836345 107836575 -110200583 + MIR SINE MIR 15 262 0 2128 91 0 0 chr3 107836960 107837234 -110199924 + AluSx SINE Alu 1 274 -38 223 105 0 92 chr3 107837234 107837310 -110199848 + (GGAAA)n Simple_repeat Simple_repeat 5 73 0 183 42 0 0 chr3 107837314 107837338 -110199820 + (CAGGG)n Simple_repeat Simple_repeat 2 25 0 2956 163 65 18 chr3 107838726 107839327 -110197831 + L1MB3 LINE L1 5554 6182 -1 1465 135 9 117 chr3 107839384 107839717 -110197441 + AluJo SINE Alu 1 297 -15 1766 155 4 4 chr3 107839717 107839993 -110197165 + AluSx SINE Alu 36 312 0 315 122 0 0 chr3 107840001 107840050 -110197108 + (GGAGAA)n Simple_repeat Simple_repeat 6 54 0 1107 154 50 14 chr3 107840223 107840444 -110196714 - MER106A DNA MER1_type -7 229 1 3328 96 25 2 chr3 107840805 107841285 -110195873 + L1PA16 LINE L1 5666 6156 -10 22 0 0 0 chr3 107841290 107841312 -110195846 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr3 107841719 107841741 -110195417 + (CA)n Simple_repeat Simple_repeat 1 22 0 2210 103 3 0 chr3 107844558 107844869 -110192289 - AluSq SINE Alu 0 312 1 1850 60 16 8 chr3 107846375 107846624 -110190534 + L1PA13 LINE L1 5912 6162 -1 2014 141 7 3 chr3 107846880 107847178 -110189980 + AluJb SINE Alu 1 299 -13 190 333 67 0 chr3 107847265 107847355 -110189803 + MIR SINE MIR 125 220 -42 180 0 0 0 chr3 107847499 107847519 -110189639 + (T)n Simple_repeat Simple_repeat 1 20 0 48 0 0 0 chr3 107847823 107847871 -110189287 + AT_rich Low_complexity Low_complexity 1 48 0 853 184 13 0 chr3 107848459 107848611 -110188547 + FRAM SINE Alu 1 154 -22 1884 159 7 0 chr3 107849185 107849481 -110187677 - AluJb SINE Alu -14 298 1 26 30 0 0 chr3 107849551 107849584 -110187574 + AT_rich Low_complexity Low_complexity 1 33 0 207 0 0 0 chr3 107850012 107850035 -110187123 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5568 82 26 4 chr3 107851952 107852759 -110184399 - L1PA14 LINE L1 -3 6158 5334 1903 137 86 55 chr3 107852890 107853344 -110183814 + L1MA7 LINE L1 5823 6290 -1 298 325 18 35 chr3 107853756 107853870 -110183288 - L2 LINE L2 -8 3264 3153 2169 128 3 0 chr3 107853913 107854219 -110182939 + AluSx SINE Alu 5 311 -1 351 0 0 0 chr3 107854219 107854258 -110182900 + (TA)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr3 107854885 107854906 -110182252 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 107854906 107854928 -110182230 + GC_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr3 107855156 107855186 -110181972 + (TA)n Simple_repeat Simple_repeat 1 30 0 1626 165 0 8 chr3 107855740 107855995 -110181163 + AluJo SINE Alu 32 284 -28 458 325 13 13 chr3 107856559 107856710 -110180448 - MIR3 SINE MIR -15 193 43 2675 40 55 3 chr3 107857282 107857630 -110179528 + L1PA8 LINE L1 5807 6172 0 2212 112 0 14 chr3 107857729 107857888 -110179270 - AluSq SINE Alu -22 291 136 2328 98 3 0 chr3 107857888 107858185 -110178973 - AluSc SINE Alu -11 298 1 2212 112 0 14 chr3 107858185 107858320 -110178838 - AluSq SINE Alu -177 136 1 643 261 133 22 chr3 107858825 107859051 -110178107 - MIR SINE MIR -2 260 10 24 32 0 0 chr3 107860162 107860193 -110176965 + AT_rich Low_complexity Low_complexity 1 31 0 280 242 59 98 chr3 107861008 107861062 -110176096 - MIR3 SINE MIR -5 203 148 2598 55 3 0 chr3 107861062 107861372 -110175786 - AluY SINE Alu 0 311 1 280 242 59 98 chr3 107861372 107861470 -110175688 - MIR3 SINE MIR -60 148 57 27 0 0 0 chr3 107861675 107861702 -110175456 + AT_rich Low_complexity Low_complexity 1 27 0 2051 139 3 13 chr3 107861867 107862176 -110174982 + AluSx SINE Alu 1 306 -6 293 269 41 55 chr3 107862410 107862555 -110174603 + MIR SINE MIR 110 252 -10 2045 206 45 48 chr3 107862584 107862785 -110174373 - MLT1E3 LTR MaLR -2 622 422 2046 102 36 7 chr3 107862785 107863088 -110174070 + AluSx SINE Alu 1 312 0 2045 206 45 48 chr3 107863088 107863510 -110173648 - MLT1E3 LTR MaLR -202 422 1 1475 163 43 105 chr3 107863994 107864461 -110172697 + L1MD3 LINE L1 6805 7242 -753 522 0 0 0 chr3 107865047 107865105 -110172053 + (TA)n Simple_repeat Simple_repeat 2 59 0 635 253 63 41 chr3 107865202 107865471 -110171687 + Charlie8 DNA MER1_type 2 276 -2141 768 215 10 5 chr3 107865754 107865917 -110171241 - MER5A DNA MER1_type -25 164 1 448 219 123 0 chr3 107866107 107866221 -110170937 + MER3 DNA MER1_type 76 203 -6 1915 157 0 13 chr3 107866314 107866614 -110170544 + AluJo SINE Alu 15 310 -2 22 0 0 0 chr3 107867415 107867437 -110169721 + AT_rich Low_complexity Low_complexity 1 22 0 233 303 135 0 chr3 107867443 107867532 -110169626 + L2 LINE L2 3162 3262 -10 472 258 76 8 chr3 107867737 107867869 -110169289 - L2 LINE L2 -5 3308 3168 29 84 0 0 chr3 107867988 107868059 -110169099 + AT_rich Low_complexity Low_complexity 1 71 0 923 234 101 70 chr3 107868104 107868184 -110168974 + L1MC4 LINE L1 7451 7527 -515 1847 149 0 39 chr3 107868184 107868492 -110168666 + AluSx SINE Alu 1 296 -16 923 234 101 70 chr3 107868492 107868957 -110168201 + L1MC4 LINE L1 7527 8013 -29 1149 156 0 0 chr3 107869772 107869977 -110167181 + L1MA4 LINE L1 6087 6291 -9 1877 174 0 0 chr3 107870009 107870303 -110166855 + AluJb SINE Alu 5 298 -14 894 171 13 0 chr3 107870877 107871029 -110166129 - FRAM SINE Alu -22 154 1 889 113 0 0 chr3 107871474 107871589 -110165569 - FLAM_C SINE Alu -18 115 1 1673 170 3 3 chr3 107872755 107873043 -110164115 + L1MCa LINE L1 348 635 -5791 3025 239 75 4 chr3 107873055 107874127 -110163031 + L1MCa LINE L1 2552 3699 -2727 2255 109 3 0 chr3 107874201 107874505 -110162653 + AluSg SINE Alu 1 305 -5 24 53 0 0 chr3 107874589 107874627 -110162531 + AT_rich Low_complexity Low_complexity 1 38 0 1600 199 3 17 chr3 107874688 107874990 -110162168 + AluJo SINE Alu 4 301 -11 2088 131 0 35 chr3 107875005 107875318 -110161840 + AluSx SINE Alu 1 302 -10 293 125 18 0 chr3 107875318 107875374 -110161784 + (TA)n Simple_repeat Simple_repeat 2 58 0 228 179 0 0 chr3 107875374 107875430 -110161728 - L1MC4 LINE L1 -1339 6703 6648 685 139 0 26 chr3 107875430 107875545 -110161613 + FRAM SINE Alu 55 166 -10 712 211 43 121 chr3 107875558 107875715 -110161443 - MIR SINE MIR -3 259 132 6990 9 0 0 chr3 107875715 107876500 -110160658 + L1PA2 LINE L1 5370 6154 -1 712 211 43 121 chr3 107876500 107876622 -110160536 - MIR SINE MIR -130 132 2 288 145 58 0 chr3 107877789 107877858 -110159300 + MLT1L LTR MaLR 190 262 -353 1924 135 14 7 chr3 107878393 107878689 -110158469 - AluSq SINE Alu -15 298 1 1334 263 48 40 chr3 107879736 107880260 -110156898 + L1MEc LINE L1 35 562 -5834 261 0 0 0 chr3 107880268 107880297 -110156861 + (A)n Simple_repeat Simple_repeat 1 29 0 850 192 4 30 chr3 107880306 107880540 -110156618 + L1MEc LINE L1 2143 2370 -4026 * 6654 132 30 30 chr3 107880534 107882250 -110154908 + L1PA14 LINE L1 4015 5723 -438 1987 135 28 0 chr3 107882250 107882539 -110154619 + AluSg SINE Alu 1 297 -13 6654 132 30 30 chr3 107882539 107882977 -110154181 + L1PA14 LINE L1 5723 6160 -1 2408 200 33 40 chr3 107882991 107883030 -110154128 + L1MEc LINE L1 2316 2354 -3861 1950 149 0 10 chr3 107883030 107883338 -110153820 + AluJb SINE Alu 1 305 -7 2408 200 33 40 chr3 107883338 107883935 -110153223 + L1MEc LINE L1 2354 2947 -3268 1711 179 7 3 chr3 107883935 107884225 -110152933 + AluJo SINE Alu 1 291 -21 2408 200 33 40 chr3 107884225 107884353 -110152805 + L1MEc LINE L1 2947 3075 -3140 2007 125 4 4 chr3 107884503 107884808 -110152350 - AluSx SINE Alu 0 305 1 2232 169 85 90 chr3 107884810 107885742 -110151416 - L1MB2 LINE L1 -264 5907 4991 313 179 45 142 chr3 107885756 107885827 -110151331 - L1MB2 LINE L1 -7 6164 6110 2237 113 0 0 chr3 107885827 107886118 -110151040 - AluSx SINE Alu -21 291 1 313 179 45 142 chr3 107886118 107886180 -110150978 - L1MB2 LINE L1 -61 6110 6044 419 226 45 23 chr3 107886199 107886376 -110150782 - L1MB2 LINE L1 -2878 3268 3088 2286 97 3 3 chr3 107887283 107887583 -110149575 - AluSx SINE Alu -12 300 1 471 443 3 85 chr3 107887584 107887961 -110149197 - MLT2D LTR ERVL -68 346 1 2309 91 6 28 chr3 107887983 107888303 -110148855 + AluSp SINE Alu 1 313 0 908 167 0 0 chr3 107888307 107888445 -110148713 + FLAM_C SINE Alu 3 140 -3 843 110 13 52 chr3 107888614 107888769 -110148389 - AluSg/x SINE Alu 0 312 164 1264 157 14 0 chr3 107888769 107888979 -110148179 - AluJo SINE Alu -13 299 87 764 150 8 0 chr3 107888981 107889114 -110148044 - MER33 DNA MER1_type -189 135 2 905 190 11 22 chr3 107889681 107889860 -110147298 - AluJo SINE Alu -20 292 116 908 136 0 0 chr3 107890044 107890169 -110146989 - AluJo SINE Alu -187 125 1 306 250 128 20 chr3 107890215 107890411 -110146747 + L1MC4a LINE L1 5948 6164 -1644 754 230 0 0 chr3 107890454 107890602 -110146556 + FAM SINE Alu 1 148 -37 711 161 0 134 chr3 107890602 107890788 -110146370 + LTR24 LTR ERV1 6 166 -301 23 68 0 0 chr3 107890792 107890836 -110146322 + AT_rich Low_complexity Low_complexity 1 44 0 481 344 70 4 chr3 107891202 107891432 -110145726 + MIR SINE MIR 4 248 -14 2159 113 3 0 chr3 107891441 107891743 -110145415 - AluSp SINE Alu -9 304 2 333 153 313 0 chr3 107891781 107891925 -110145233 - Charlie5 DNA MER1_type -29 2583 2395 2256 100 0 28 chr3 107891925 107892246 -110144912 - AluSq SINE Alu -1 312 1 1324 112 19 42 chr3 107892589 107892803 -110144355 - AluSg/x SINE Alu -26 284 76 201 213 21 0 chr3 107893846 107893893 -110143265 + (TA)n Simple_repeat Simple_repeat 1 48 0 1702 159 0 45 chr3 107894542 107894851 -110142307 + AluJb SINE Alu 1 295 -17 1995 152 7 0 chr3 107894864 107895161 -110141997 + AluSx SINE Alu 4 302 -10 239 241 52 7 chr3 107895189 107895421 -110141737 + AluJo SINE Alu 3 295 -7 555 157 75 50 chr3 107896155 107896166 -110140992 + L1MC5 LINE L1 7299 7308 -653 630 185 147 32 chr3 107896166 107896323 -110140835 + FAM SINE Alu 1 175 0 555 157 75 50 chr3 107896323 107896470 -110140688 + L1MC5 LINE L1 7308 7461 -500 186 100 0 60 chr3 107896478 107896528 -110140630 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 282 250 106 0 chr3 107896560 107896664 -110140494 + MLT1F LTR MaLR 315 429 -113 598 241 77 37 chr3 107896733 107897032 -110140126 + L1MC5 LINE L1 7508 7818 -143 832 172 0 8 chr3 107897033 107897167 -110139991 + FLAM_C SINE Alu 1 133 0 4576 91 3 7 chr3 107897175 107897855 -110139303 + L1P LINE L1 13 689 -5457 399 149 58 11 chr3 107898016 107898103 -110139055 + MER53 DNA DNA 16 106 -83 476 114 13 0 chr3 107898135 107898214 -110138944 - MER53 DNA DNA -88 101 22 469 134 12 0 chr3 107898141 107898223 -110138935 + MER53 DNA DNA 105 187 -2 * 243 319 44 0 chr3 107898238 107898329 -110138829 + MIR SINE MIR 153 247 -15 1451 163 136 0 chr3 107898529 107898787 -110138371 + AluJb SINE Alu 3 295 -7 2284 103 10 0 chr3 107899962 107900307 -110136851 - AluSq SINE Alu 0 348 1 725 172 39 0 chr3 107900912 107901040 -110136118 + FLAM_C SINE Alu 1 133 0 604 89 86 3 chr3 107901096 107902019 -110135139 + (TA)n Simple_repeat Simple_repeat 1 998 0 2193 90 0 7 chr3 107902019 107902309 -110134849 - AluSp SINE Alu -25 288 1 503 281 32 77 chr3 107904073 107904294 -110132864 - MIR SINE MIR 0 262 52 224 315 99 0 chr3 107904316 107904427 -110132731 - MIR SINE MIR -15 247 126 270 311 142 0 chr3 107905280 107905386 -110131772 - L2 LINE L2 0 3313 3193 376 383 7 21 chr3 107906100 107906241 -110130917 + MIR3 SINE MIR 19 157 -51 884 293 41 0 chr3 107906243 107906489 -110130669 - MIR SINE MIR -3 259 4 2261 93 7 13 chr3 107906517 107906827 -110130331 - AluSq SINE Alu -5 308 1 1810 159 24 3 chr3 107907325 107907614 -110129544 + AluSx SINE Alu 1 295 -17 457 147 0 0 chr3 107907766 107907834 -110129324 - AluSx SINE Alu -48 261 194 947 111 0 0 chr3 107907834 107907960 -110129198 - AluSx SINE Alu -186 126 1 998 119 24 0 chr3 107907960 107908128 -110129030 + L1MB3 LINE L1 6003 6174 -9 254 349 104 37 chr3 107908799 107909097 -110128061 + L2 LINE L2 2995 3312 -1 247 281 16 0 chr3 107910781 107910845 -110126313 - L2 LINE L2 -4 3309 3245 2475 64 0 0 chr3 107911540 107911836 -110125322 + AluY SINE Alu 1 296 -15 21 0 0 0 chr3 107911837 107911858 -110125300 + AT_rich Low_complexity Low_complexity 1 21 0 1700 172 9 49 chr3 107911953 107912278 -110124880 + AluJb SINE Alu 1 312 0 22 0 0 0 chr3 107912575 107912597 -110124561 + AT_rich Low_complexity Low_complexity 1 22 0 206 220 209 22 chr3 107914085 107914176 -110122982 - L2 LINE L2 -80 3233 3126 670 251 17 17 chr3 107914205 107914380 -110122778 + MER5B DNA MER1_type 3 177 -1 210 37 0 0 chr3 107915266 107915293 -110121865 + (CCCCG)n Simple_repeat Simple_repeat 1 27 0 1874 33 0 0 chr3 107916618 107916828 -110120330 - L1PA5 LINE L1 0 6154 5945 1811 29 0 0 chr3 107916828 107917038 -110120120 + L1P2 LINE L1 5362 5571 -583 469 70 0 0 chr3 107917369 107917426 -110119732 + Alu SINE Alu 240 296 -16 2086 66 4 8 chr3 107917962 107918221 -110118937 + AluSq SINE Alu 1 258 -55 1989 109 0 0 chr3 107918321 107918586 -110118572 + AluSg SINE Alu 33 297 -13 876 219 116 19 chr3 107918586 107918801 -110118357 - L1MD3 LINE L1 -350 7645 7410 717 208 8 0 chr3 107918801 107918931 -110118227 - MLT1F1 LTR MaLR -436 131 1 4171 190 122 84 chr3 107918931 107920271 -110116887 - L1MD3 LINE L1 -717 7278 5888 2581 44 0 0 chr3 107920550 107920847 -110116311 - AluY SINE Alu -13 298 2 2431 191 61 67 chr3 107921124 107921734 -110115424 + L1ME1 LINE L1 4643 5255 -911 2300 99 0 22 chr3 107921734 107922046 -110115112 - AluY SINE Alu -6 305 1 2431 191 61 67 chr3 107922046 107922097 -110115061 + L1ME1 LINE L1 5255 5305 -861 2228 121 0 0 chr3 107922097 107922395 -110114763 - AluSx SINE Alu -14 298 1 2431 191 61 67 chr3 107922395 107922966 -110114192 + L1ME1 LINE L1 5305 5895 -271 268 189 161 84 chr3 107922986 107923074 -110114084 + L1MA10 LINE L1 6180 6285 -49 2207 124 0 10 chr3 107923074 107923381 -110113777 - AluSx SINE Alu -8 304 1 268 189 161 84 chr3 107923381 107923435 -110113723 + L1MA10 LINE L1 6285 6333 -1 23 0 0 0 chr3 107923437 107923460 -110113698 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr3 107923488 107923516 -110113642 + AT_rich Low_complexity Low_complexity 1 28 0 2415 95 7 0 chr3 107924218 107924524 -110112634 + AluSc SINE Alu 1 308 -1 1983 108 52 14 chr3 107924925 107925213 -110111945 + AluSx SINE Alu 1 299 -13 859 147 0 8 chr3 107925858 107925987 -110111171 - FLAM_C SINE Alu -5 128 1 468 252 59 7 chr3 107926265 107926400 -110110758 + MIR3 SINE MIR 67 208 0 24 32 0 0 chr3 107926596 107926627 -110110531 + AT_rich Low_complexity Low_complexity 1 31 0 746 194 84 19 chr3 107927451 107927606 -110109552 + FRAM SINE Alu 1 165 -1 180 0 0 0 chr3 107927882 107927902 -110109256 + (TA)n Simple_repeat Simple_repeat 2 21 0 1720 146 3 60 chr3 107929739 107929912 -110107246 - AluJo SINE Alu -11 301 152 2379 94 3 0 chr3 107929912 107930211 -110106947 - AluSp SINE Alu -13 300 1 1720 146 3 60 chr3 107930211 107930352 -110106806 - AluJo SINE Alu -160 152 5 182 260 120 0 chr3 107930397 107930447 -110106711 - MIR SINE MIR -118 90 35 256 234 16 0 chr3 107930944 107931008 -110106150 - L1ME4a LINE L1 -97 6024 5960 543 198 55 0 chr3 107931031 107931122 -110106036 + FAM SINE Alu 1 96 -89 303 275 46 8 chr3 107931133 107931264 -110105894 - L1MC4a LINE L1 -1926 5882 5747 671 173 0 0 chr3 107931351 107931455 -110105703 + FLAM_C SINE Alu 35 138 -5 23 0 0 0 chr3 107932201 107932224 -110104934 + AT_rich Low_complexity Low_complexity 1 23 0 1355 291 211 43 chr3 107932654 107933377 -110103781 + L2 LINE L2 121 721 -2593 2181 106 3 37 chr3 107933377 107933698 -110103460 + AluSq SINE Alu 3 312 -1 1355 291 211 43 chr3 107933698 107933711 -110103447 + L2 LINE L2 721 730 -2584 1539 170 36 29 chr3 107933711 107933987 -110103171 + AluJo SINE Alu 11 288 -24 1355 291 211 43 chr3 107933987 107934607 -110102551 + L2 LINE L2 730 1706 -1608 961 182 66 22 chr3 107934900 107935081 -110102077 - AluJ SINE Alu -17 295 107 451 165 101 0 chr3 107935082 107935161 -110101997 - AluSg/x SINE Alu -8 304 218 1778 128 0 4 chr3 107935172 107935421 -110101737 - AluSq SINE Alu -65 248 1 779 176 0 0 chr3 107935421 107935529 -110101629 - AluJ SINE Alu -195 117 10 2299 86 0 0 chr3 107935547 107935879 -110101279 - AluSg SINE Alu 0 332 1 1978 140 7 16 chr3 107936508 107936816 -110100342 - AluJo SINE Alu -7 305 1 254 290 107 8 chr3 107936897 107937028 -110100130 + MIR3 SINE MIR 56 199 -9 1930 168 7 0 chr3 107938158 107938456 -110098702 + AluJo SINE Alu 1 300 -12 2771 29 0 0 chr3 107938834 107939145 -110098013 - AluYa5 SINE Alu 0 311 1 2278 105 3 0 chr3 107939145 107939441 -110097717 - AluSp SINE Alu -16 297 1 549 198 122 41 chr3 107940243 107940415 -110096743 + MIR SINE MIR 65 250 -12 31989 106 19 64 chr3 107940706 107944942 -110092216 + L1PA7 LINE L1 1 4424 -1730 2123 123 0 0 chr3 107944942 107945234 -110091924 + AluSg1 SINE Alu 1 292 -17 31989 106 19 64 chr3 107945234 107945906 -110091252 + L1PA7 LINE L1 4424 5124 -1030 2455 74 3 0 chr3 107945906 107946205 -110090953 - AluSp SINE Alu -13 300 1 31989 106 19 64 chr3 107946205 107947076 -110090082 + L1PA7 LINE L1 5124 5450 -704 2454 87 0 6 chr3 107947076 107947387 -110089771 + AluSg SINE Alu 1 309 -1 31989 106 19 64 chr3 107947387 107948062 -110089096 + L1PA7 LINE L1 5450 6154 0 23 0 0 0 chr3 107948164 107948187 -110088971 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr3 107948220 107948244 -110088914 + AT_rich Low_complexity Low_complexity 1 24 0 1737 151 35 7 chr3 107948279 107948563 -110088595 + AluJb SINE Alu 1 292 -20 21 36 0 0 chr3 107948642 107948670 -110088488 + AT_rich Low_complexity Low_complexity 1 28 0 1487 221 0 7 chr3 107948723 107949013 -110088145 - AluJo SINE Alu -24 288 1 831 241 62 39 chr3 107949013 107949039 -110088119 + L1ME LINE L1 5461 5485 -677 2317 90 7 7 chr3 107949039 107949338 -110087820 + AluSp SINE Alu 1 299 -14 831 241 62 39 chr3 107949338 107949568 -110087590 + L1ME LINE L1 5485 5723 -439 2315 102 3 0 chr3 107949625 107949918 -110087240 + AluSq SINE Alu 7 300 -13 1541 187 10 33 chr3 107950578 107950883 -110086275 - AluJb SINE Alu -14 298 1 446 190 69 17 chr3 107950891 107951007 -110086151 - L1MC5 LINE L1 -30 7931 7810 216 0 0 0 chr3 107951053 107951077 -110086081 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 4526 26 0 0 chr3 107951080 107951570 -110085588 - L1PA3 LINE L1 -8 6147 5658 5824 19 0 0 chr3 107951570 107952529 -110084629 + L1PA3 LINE L1 4716 5674 -481 2501 67 0 0 chr3 107952576 107952876 -110084282 - AluY SINE Alu -11 300 1 1046 66 15 0 chr3 107952880 107953016 -110084142 - AluSp/q SINE Alu -17 296 159 1739 175 6 32 chr3 107953158 107953472 -110083686 + AluJo SINE Alu 1 306 -6 2463 75 0 0 chr3 107953963 107954257 -110082901 - AluY SINE Alu -17 294 1 8238 23 1 0 chr3 107954314 107955765 -110081393 - L1PA3 LINE L1 -3 6152 4701 29481 42 7 5 chr3 107955765 107959360 -110077798 - L1PA3 LINE L1 -2530 3616 15 586 152 10 10 chr3 107959360 107959459 -110077699 - FLAM_A SINE Alu 0 142 44 1138 93 58 0 chr3 108160098 108160270 -109876888 + THE1-int LTR MaLR 1297 1478 -102 331 152 411 9 chr3 108160426 108160538 -109876620 + Tigger1 DNA MER2_type 1 157 -2261 1047 164 16 0 chr3 108160583 108160766 -109876392 + Tigger1 DNA MER2_type 2231 2416 -2 27 29 0 0 chr3 108160843 108160877 -109876281 + AT_rich Low_complexity Low_complexity 1 34 0 1288 183 38 102 chr3 108161300 108161700 -109875458 - MLT1A2 LTR MaLR 0 374 1 12446 32 0 2 chr3 108161860 108164147 -109873011 + L1PA3 LINE L1 3883 6171 0 547 305 30 59 chr3 108164314 108164619 -109872539 - MLT1J LTR MaLR -215 296 1 213 317 59 40 chr3 108165250 108165351 -109871807 - L2 LINE L2 -618 2696 2594 3651 116 70 5 chr3 108165370 108165956 -109871202 + L1PA14 LINE L1 5538 6161 0 823 234 75 15 chr3 108166130 108166331 -109870827 - MIR SINE MIR -3 259 47 2580 192 31 49 chr3 108168032 108168555 -109868603 + MLT2B3 LTR ERVL 1 515 -39 448 55 14 14 chr3 108168555 108168628 -109868530 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 2580 192 31 49 chr3 108168628 108168655 -109868503 + MLT2B3 LTR ERVL 515 541 -13 270 0 0 0 chr3 108168999 108169029 -109868129 + (TAA)n Simple_repeat Simple_repeat 3 32 0 342 306 206 0 chr3 108169042 108169241 -109867917 - MIR SINE MIR -21 241 2 383 220 202 0 chr3 108169542 108169651 -109867507 + L2 LINE L2 3182 3312 -1 795 323 138 65 chr3 108171487 108171658 -109865500 - L3 LINE CR1 -12 1565 1408 3404 160 6 49 chr3 108171658 108172190 -109864968 - L1MC1 LINE L1 0 6333 5836 2046 132 0 3 chr3 108172190 108172477 -109864681 - AluSx SINE Alu -26 286 1 3404 160 6 49 chr3 108172477 108172632 -109864526 - L1MC1 LINE L1 -497 5836 5676 795 323 138 65 chr3 108172632 108173260 -109863898 - L3 LINE CR1 -169 1408 708 281 213 40 13 chr3 108173383 108173458 -109863700 - L1ME4a LINE L1 -105 6016 5940 24 67 0 0 chr3 108173486 108173531 -109863627 + AT_rich Low_complexity Low_complexity 1 45 0 2050 117 3 10 chr3 108173566 108173864 -109863294 - AluSg SINE Alu -14 296 1 235 239 0 0 chr3 108173889 108173935 -109863223 - L2 LINE L2 -37 3235 3190 686 367 86 27 chr3 108173992 108174375 -109862783 - L3 LINE CR1 -867 710 292 896 198 29 19 chr3 108174375 108174582 -109862576 + MER3 DNA MER1_type 1 209 0 686 367 86 27 chr3 108174582 108174677 -109862481 - L3 LINE CR1 -1285 292 204 942 138 6 11 chr3 108174717 108174898 -109862260 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 416 190 16 16 chr3 108174898 108175019 -109862139 + CT-rich Low_complexity Low_complexity 2 122 0 381 326 137 30 chr3 108176122 108176487 -109860671 - L2 LINE L2 -456 2858 2455 1074 166 66 23 chr3 108176705 108176964 -109860194 - L1MD3 LINE L1 0 7995 7726 1206 236 61 30 chr3 108177046 108177342 -109859816 + MER21B LTR ERV1 20 324 -539 1666 182 91 52 chr3 108177354 108177793 -109859365 - MLT1D LTR MaLR -49 456 1 561 245 35 14 chr3 108177795 108177938 -109859220 - MIR SINE MIR -80 182 37 208 302 0 0 chr3 108178021 108178064 -109859094 - MER5A DNA MER1_type -83 106 64 258 105 0 0 chr3 108178065 108178103 -109859055 + (TA)n Simple_repeat Simple_repeat 2 39 0 1242 215 40 22 chr3 108178131 108178405 -109858753 - AluJo SINE Alu -30 282 4 329 240 0 0 chr3 108178407 108178478 -109858680 - MER5A DNA MER1_type -115 74 4 362 321 64 21 chr3 108178496 108178683 -109858475 - MIR SINE MIR 0 262 68 354 294 20 73 chr3 108178683 108178887 -109858271 - LTR67 LTR ERVL -12 545 353 2185 204 75 51 chr3 108178972 108179502 -109857656 + MER21B LTR ERV1 310 852 -11 460 145 17 12 chr3 108179524 108179624 -109857534 - L1MC4a LINE L1 -250 7558 7481 1661 82 8 4 chr3 108179637 108179881 -109857277 - L1MA2 LINE L1 0 6304 6060 * 10298 165 27 29 chr3 108179879 108180003 -109857155 - L1PA13 LINE L1 -1 6162 6039 2268 75 7 3 chr3 108180003 108180295 -109856863 - AluY SINE Alu -18 293 1 10298 165 27 29 chr3 108180295 108181419 -109855739 - L1PA13 LINE L1 -124 6039 4915 1878 154 0 0 chr3 108181419 108181704 -109855454 + AluSx SINE Alu 23 307 -5 10298 165 27 29 chr3 108181704 108183314 -109853844 - L1PA13 LINE L1 -1248 4915 3308 4953 172 14 4 chr3 108183315 108184122 -109853036 + L1MA3 LINE L1 903 1717 -5848 * 7308 120 28 7 chr3 108184106 108185552 -109851606 + L1MA3 LINE L1 2491 3977 -3588 691 194 0 0 chr3 108185554 108185693 -109851465 + L1MA3 LINE L1 4788 4926 -2639 2347 127 8 27 chr3 108185694 108186065 -109851093 - THE1B LTR MaLR 0 364 1 6219 147 73 5 chr3 108186065 108187437 -109849721 - THE1B-int LTR MaLR 0 1580 48 1130 151 0 0 chr3 108187437 108187603 -109849555 + THE1B LTR MaLR 199 364 0 1213 168 25 53 chr3 108187627 108187871 -109849287 - THE1B LTR MaLR -127 237 1 6802 164 33 18 chr3 108187874 108190081 -109847077 + L1MA3 LINE L1 4931 7225 -499 1975 93 69 17 chr3 108190081 108190371 -109846787 + AluY SINE Alu 1 305 -6 6802 164 33 18 chr3 108190371 108190878 -109846280 + L1MA3 LINE L1 7225 7723 -1 211 318 32 0 chr3 108190907 108190970 -109846188 - L2 LINE L2 -5 3308 3244 378 349 100 31 chr3 108191643 108191953 -109845205 - L3 LINE CR1 -205 1372 1034 547 85 0 24 chr3 108191953 108192035 -109845123 - MADE1 DNA Mariner 0 80 1 378 349 100 31 chr3 108192035 108192074 -109845084 - L3 LINE CR1 -543 1034 999 2110 146 0 0 chr3 108192222 108192530 -109844628 - AluJb SINE Alu 0 312 5 367 296 17 9 chr3 108193017 108193132 -109844026 + MIR SINE MIR 147 262 0 196 274 151 0 chr3 108193270 108193343 -109843815 - MIR SINE MIR -95 113 30 2277 113 3 0 chr3 108193479 108193814 -109843344 + AluSx SINE Alu 1 336 0 262 238 226 0 chr3 108193834 108194002 -109843156 + L1M4 LINE L1 3792 3997 -2149 304 287 126 29 chr3 108194143 108194317 -109842841 + L1M4 LINE L1 4046 4236 -1910 921 262 63 94 chr3 108194445 108195018 -109842140 + MLT1H1 LTR MaLR 1 555 0 536 269 32 18 chr3 108195299 108195508 -109841650 - MLT1G1 LTR MaLR -5 590 281 583 241 29 0 chr3 108195509 108195646 -109841512 - L1MB5 LINE L1 -131 6043 5903 21 0 0 0 chr3 108195701 108195722 -109841436 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr3 108195872 108195907 -109841251 + AT_rich Low_complexity Low_complexity 1 35 0 484 217 32 25 chr3 108195993 108196150 -109841008 + L1MC5 LINE L1 7177 7334 -627 212 301 0 41 chr3 108196213 108196286 -109840872 + MIR3 SINE MIR 87 156 -52 23 0 0 0 chr3 108196289 108196312 -109840846 + AT_rich Low_complexity Low_complexity 1 23 0 352 242 25 17 chr3 108196424 108196544 -109840614 + L1MC5 LINE L1 7347 7467 -494 832 199 20 56 chr3 108196575 108196771 -109840387 - MER20 DNA MER1_type -27 192 4 567 206 21 96 chr3 108196872 108197154 -109840004 + L1MC5 LINE L1 7668 7928 -33 425 203 98 30 chr3 108197193 108197326 -109839832 + HAL1 LINE L1 2352 2493 -14 227 196 20 0 chr3 108197458 108197509 -109839649 + L1MC5 LINE L1 7380 7431 -530 1196 148 0 32 chr3 108198601 108198817 -109838341 + MER3 DNA MER1_type 1 209 0 2596 39 7 0 chr3 108199583 108199891 -109837267 + AluY SINE Alu 1 310 -1 6139 232 59 54 chr3 108200445 108201900 -109835258 - L1MEc LINE L1 -1744 4796 3350 316 146 0 0 chr3 108201900 108201955 -109835203 - U5 snRNA snRNA -61 55 1 6139 232 59 54 chr3 108201955 108202735 -109834423 - L1MEc LINE L1 -3190 3350 2549 2606 47 0 0 chr3 108202735 108203032 -109834126 - AluSg SINE Alu -13 297 1 6139 232 59 54 chr3 108203032 108203124 -109834034 - L1MEc LINE L1 -3991 2549 2459 1392 259 48 54 chr3 108203111 108203813 -109833345 - L1MEc LINE L1 -4832 1708 1011 * 1233 97 0 6 chr3 108203821 108203997 -109833161 - L1PA15 LINE L1 -5 6160 5986 741 242 5 0 chr3 108203997 108204183 -109832975 + L1 LINE L1 4394 4580 -1566 363 240 20 0 chr3 108204822 108204922 -109832236 + L1ME LINE L1 526 627 -5443 486 280 14 7 chr3 108205276 108205419 -109831739 - L1MEc LINE L1 -5921 609 466 21 36 0 0 chr3 108207027 108207055 -109830103 + AT_rich Low_complexity Low_complexity 1 28 0 516 332 62 29 chr3 108207714 108208070 -109829088 - L2 LINE L2 -146 3167 2790 459 0 0 0 chr3 108208074 108208125 -109829033 + (TTATA)n Simple_repeat Simple_repeat 1 51 0 2147 102 3 3 chr3 108208126 108208410 -109828748 - AluSc SINE Alu -25 284 1 240 307 29 14 chr3 108208523 108208663 -109828495 + HAL1b LINE L1 1180 1321 -27 31 58 0 0 chr3 108210795 108210847 -109826311 + AT_rich Low_complexity Low_complexity 1 52 0 324 147 0 0 chr3 108211584 108211659 -109825499 + (A)n Simple_repeat Simple_repeat 1 75 0 1461 213 28 64 chr3 108211814 108212468 -109824690 - LTR9 LTR ERV1 -11 601 13 2441 83 0 0 chr3 108212470 108212771 -109824387 + AluSc SINE Alu 1 301 -8 21 0 0 0 chr3 108212859 108212880 -109824278 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 108213307 108213329 -109823829 + AT_rich Low_complexity Low_complexity 1 22 0 285 98 0 0 chr3 108214284 108214325 -109822833 + (TG)n Simple_repeat Simple_repeat 2 42 0 462 250 8 8 chr3 108214417 108214541 -109822617 - MER103 DNA DNA -41 125 2 22 0 0 0 chr3 108214826 108214848 -109822310 + AT_rich Low_complexity Low_complexity 1 22 0 387 269 104 16 chr3 108215761 108215943 -109821215 - L1MC5 LINE L1 -51 7910 7713 234 315 110 39 chr3 108216485 108216612 -109820546 - L2 LINE L2 -1 3271 3136 430 129 0 24 chr3 108217512 108217597 -109819561 + L1PA8 LINE L1 5948 6030 -142 464 47 0 0 chr3 108217605 108217650 -109819508 + L1PA8 LINE L1 6107 6170 -2 678 262 19 24 chr3 108217714 108217920 -109819238 - MIR SINE MIR -8 254 50 356 272 119 76 chr3 108218182 108218612 -109818546 - L2 LINE L2 -138 3134 2683 435 235 183 24 chr3 108219160 108219299 -109817859 - Charlie2 DNA MER1_type 0 2862 2747 2088 98 0 3 chr3 108219299 108219607 -109817551 - AluY SINE Alu 0 307 1 435 235 183 24 chr3 108219607 108219679 -109817479 - Charlie2 DNA MER1_type -115 2747 2616 896 233 155 18 chr3 108220460 108220958 -109816200 - Charlie2 DNA MER1_type -238 2624 2059 245 322 122 33 chr3 108220958 108221138 -109816020 + MIR3 SINE MIR 10 205 -3 2776 226 32 3 chr3 108221604 108222223 -109814935 + MER82 DNA MER2_type 6 642 -11 248 360 72 9 chr3 108222327 108222438 -109814720 - L2 LINE L2 0 3272 3155 244 202 155 36 chr3 108223357 108223441 -109813717 - L2 LINE L2 -8 3264 3171 476 258 17 42 chr3 108226198 108226318 -109810840 + L2 LINE L2 3197 3313 0 * 1235 352 81 38 chr3 108226304 108227048 -109810110 + L3 LINE CR1 688 1463 -114 346 289 50 33 chr3 108227312 108227433 -109809725 - L2 LINE L2 -2 3270 3148 337 322 48 14 chr3 108227519 108227665 -109809493 + L2 LINE L2 3117 3267 -5 603 316 42 0 chr3 108228529 108228719 -109808439 + MIR SINE MIR 28 225 -37 1568 185 35 21 chr3 108229335 108229621 -109807537 + AluJb SINE Alu 1 290 -22 184 329 155 12 chr3 108230365 108230526 -109806632 + MIR SINE MIR 59 242 -20 745 319 32 12 chr3 108231832 108232083 -109805075 + L2 LINE L2 62 317 -2997 823 278 88 50 chr3 108232108 108232605 -109804553 + LTR33A LTR ERVL 1 516 -7 4142 240 61 171 chr3 108232608 108233600 -109803558 + L2 LINE L2 331 1431 -1882 705 304 70 36 chr3 108233600 108233959 -109803199 + LTR16B LTR ERVL 10 380 -84 4142 240 61 171 chr3 108233959 108235942 -109801216 + L2 LINE L2 1431 3307 -6 609 330 120 0 chr3 108236005 108236238 -109800920 + MIR SINE MIR 2 262 0 19902 171 32 6 chr3 108236358 108241655 -109795503 - L1 LINE L1 -2037 5528 90 297 0 0 0 chr3 108241655 108241688 -109795470 + (TG)n Simple_repeat Simple_repeat 2 34 0 19902 171 32 6 chr3 108241688 108241740 -109795418 - L1 LINE L1 -7475 90 41 393 115 0 0 chr3 108241752 108241813 -109795345 - L1PB4 LINE L1 -28 6128 6068 1737 178 14 3 chr3 108242372 108242659 -109794499 - AluJo SINE Alu -18 294 5 26 64 0 0 chr3 108242694 108242741 -109794417 + AT_rich Low_complexity Low_complexity 1 47 0 8430 67 3 0 chr3 108242952 108244018 -109793140 - MER11C LTR ERVK -2 1069 1 412 315 66 17 chr3 108244018 108244190 -109792968 - MIR3 SINE MIR -9 199 16 23 33 0 0 chr3 108244293 108244323 -109792835 + AT_rich Low_complexity Low_complexity 1 30 0 845 286 59 0 chr3 108244352 108244590 -109792568 + MIR SINE MIR 6 257 -5 389 226 90 13 chr3 108244986 108245141 -109792017 - MER112 DNA MER1_type -93 167 1 2043 144 62 6 chr3 108245891 108246246 -109790912 - THE1C LTR MaLR 0 375 1 8203 135 82 14 chr3 108246246 108247725 -109789433 - THE1C-int LTR MaLR 0 1580 1 2301 118 41 14 chr3 108247725 108248090 -109789068 - THE1C LTR MaLR 0 375 1 945 274 121 11 chr3 108248169 108248698 -109788460 - Charlie7 DNA MER1_type -278 2334 1748 820 100 71 0 chr3 108248703 108248843 -109788315 - L1MB1 LINE L1 -5 6163 6014 2046 192 35 2 chr3 108248844 108249271 -109787887 - L1MB1 LINE L1 -244 5924 5484 1239 198 62 9 chr3 108249275 108249742 -109787416 + L1MB1 LINE L1 5027 5515 -639 2524 232 95 36 chr3 108249744 108250020 -109787138 - Charlie7 DNA MER1_type -857 1755 1497 12937 21 8 1 chr3 108250020 108252297 -109784861 + L1PA2 LINE L1 3870 6153 -2 2524 232 95 36 chr3 108252297 108252597 -109784561 - Charlie7 DNA MER1_type -1115 1497 1216 189 94 0 0 chr3 108252597 108252629 -109784529 + (TA)n Simple_repeat Simple_repeat 1 32 0 2524 232 95 36 chr3 108252629 108253234 -109783924 - Charlie7 DNA MER1_type -1396 1216 504 531 224 170 17 chr3 108253336 108253630 -109783528 - L1MC5 LINE L1 -57 7904 7566 320 287 144 10 chr3 108253632 108253827 -109783331 - L2 LINE L2 -757 2557 2337 22 56 0 0 chr3 108253906 108253942 -109783216 + AT_rich Low_complexity Low_complexity 1 36 0 7231 92 7 1 chr3 108253961 108255795 -109781363 - L1PA8 LINE L1 0 6172 4339 11106 127 18 39 chr3 108255797 108258087 -109779071 - L1P3 LINE L1 -4140 2321 11 276 301 234 13 chr3 108258089 108258328 -109778830 - L2 LINE L2 -1094 2220 1929 225 310 5 20 chr3 108258322 108258428 -109778730 + MIR SINE MIR 41 142 -66 * 447 233 23 122 chr3 108260224 108260396 -109776762 - MIR3 SINE MIR -10 198 44 1827 126 88 6 chr3 108260412 108260754 -109776404 - L1MA2 LINE L1 -3 6301 5932 1662 204 108 20 chr3 108261250 108261706 -109775452 - MLT1D LTR MaLR -9 496 1 232 348 0 11 chr3 108261745 108261837 -109775321 + MIR SINE MIR 157 247 -15 198 0 0 0 chr3 108263414 108263436 -109773722 + (T)n Simple_repeat Simple_repeat 1 22 0 1674 191 7 7 chr3 108264757 108265061 -109772097 - AluJo SINE Alu -6 306 3 451 264 67 79 chr3 108265410 108265664 -109771494 + MIR SINE MIR 12 262 0 197 352 65 36 chr3 108267352 108267599 -109769559 + L2 LINE L2 2507 2760 -554 1375 179 107 36 chr3 108267788 108268152 -109769006 + MLT1B LTR MaLR 1 390 0 738 338 101 48 chr3 108270845 108271673 -109765485 + L2 LINE L2 2291 3268 -4 690 211 4 132 chr3 108272104 108272331 -109764827 + MER3 DNA MER1_type 5 202 -7 516 253 200 0 chr3 108273182 108273332 -109763826 - MER5A DNA MER1_type -1 188 9 437 336 0 0 chr3 108274060 108274167 -109762991 + MLT1E LTR MaLR 291 397 -196 293 345 80 77 chr3 108274728 108275556 -109761602 + L2 LINE L2 2437 3263 -9 182 278 122 26 chr3 108275731 108275846 -109761312 + L2 LINE L2 3093 3218 -54 1384 225 35 59 chr3 108275991 108276396 -109760762 - MLT1D LTR MaLR -80 425 31 236 232 18 0 chr3 108276448 108276504 -109760654 + L2 LINE L2 3215 3271 -1 1576 221 92 87 chr3 108276667 108277254 -109759904 + MLT1E LTR MaLR 3 592 -1 254 324 9 63 chr3 108277858 108277969 -109759189 - MIR3 SINE MIR -28 180 76 250 261 0 0 chr3 108278367 108278413 -109758745 - MIR SINE MIR -105 103 58 195 220 17 85 chr3 108278682 108278741 -109758417 + MIR SINE MIR 102 147 -61 207 0 0 0 chr3 108278857 108278880 -109758278 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 210 0 18 91 chr3 108278879 108278934 -109758224 + (TA)n Simple_repeat Simple_repeat 1 51 0 188 291 164 18 chr3 108279176 108279286 -109757872 - L2 LINE L2 -222 3050 2925 407 81 0 0 chr3 108279866 108279928 -109757230 - L1PA13 LINE L1 -133 6030 5969 830 76 0 17 chr3 108279928 108280047 -109757111 + L1PA13 LINE L1 6028 6144 -19 2297 81 3 0 chr3 108280454 108280765 -109756393 + AluSp SINE Alu 1 312 0 23 33 0 0 chr3 108281360 108281390 -109755768 + AT_rich Low_complexity Low_complexity 1 30 0 210 200 80 0 chr3 108281398 108281448 -109755710 + MIR SINE MIR 82 135 -127 1908 83 0 0 chr3 108282949 108283191 -109753967 + AluSg SINE Alu 63 304 -6 1394 184 144 43 chr3 108283593 108283967 -109753191 - MSTC LTR MaLR 0 428 17 280 335 29 29 chr3 108285959 108286132 -109751026 - L1ME LINE L1 -340 5781 5609 430 314 209 31 chr3 108286743 108287417 -109749741 - L2 LINE L2 -908 2406 1613 331 206 106 28 chr3 108287490 108287631 -109749527 + L1MC4a LINE L1 5765 5916 -1892 2741 13 0 0 chr3 108287913 108288214 -109748944 - AluYb8 SINE Alu -17 301 1 420 239 98 0 chr3 108288756 108288848 -109748310 - MER81 DNA DNA -13 101 1 220 254 55 0 chr3 108289301 108289356 -109747802 - MIR3 SINE MIR -7 201 144 735 187 22 7 chr3 108289577 108289716 -109747442 - MER8 DNA MER2_type -4 235 95 1919 201 80 21 chr3 108290264 108290741 -109746417 + MLT1D LTR MaLR 1 505 0 381 304 49 49 chr3 108290789 108290993 -109746165 - Charlie8 DNA MER1_type -2152 265 62 244 292 0 46 chr3 108290994 108291124 -109746034 + L1ME LINE L1 5669 5792 -329 582 216 8 30 chr3 108291628 108291762 -109745396 + FRAM SINE Alu 24 154 -22 200 86 29 0 chr3 108291813 108291848 -109745310 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 259 274 16 65 chr3 108292002 108292126 -109745032 + MIR SINE MIR 94 211 -51 22 35 0 0 chr3 108293881 108293910 -109743248 + AT_rich Low_complexity Low_complexity 1 29 0 589 274 69 73 chr3 108294117 108294315 -109742843 - L1MC4a LINE L1 -1882 5926 5729 291 54 0 0 chr3 108294315 108294352 -109742806 + (TG)n Simple_repeat Simple_repeat 2 38 0 589 274 69 73 chr3 108294352 108294605 -109742553 - L1MC4a LINE L1 -2079 5729 5477 751 336 55 33 chr3 108294606 108295375 -109741783 - L1MC4a LINE L1 -750 5396 4677 181 25 0 100 chr3 108295904 108295944 -109741214 + (TTTTA)n Simple_repeat Simple_repeat 4 39 0 651 161 67 13 chr3 108295946 108296095 -109741063 - L1MA4 LINE L1 0 6300 6144 398 188 0 0 chr3 108296098 108296178 -109740980 + L1MA4 LINE L1 6053 6132 -168 645 154 40 179 chr3 108296178 108296379 -109740779 + AluJo SINE Alu 116 288 -24 251 243 56 35 chr3 108296792 108296936 -109740222 - L1MC4a LINE L1 -3314 2832 2686 915 279 154 56 chr3 108297021 108297191 -109739967 - L2 LINE L2 0 3313 3161 2090 92 35 0 chr3 108297191 108297475 -109739683 - AluSg SINE Alu -16 294 1 915 279 154 56 chr3 108297475 108297877 -109739281 - L2 LINE L2 -152 3161 2690 2374 74 0 3 chr3 108297904 108298216 -109738942 + AluY SINE Alu 1 311 0 490 121 77 33 chr3 108298417 108298508 -109738650 + FRAM SINE Alu 65 159 -17 378 313 84 26 chr3 108299043 108299270 -109737888 - HAL1b LINE L1 -655 693 454 23 0 0 0 chr3 108299481 108299504 -109737654 + AT_rich Low_complexity Low_complexity 1 23 0 1731 185 80 14 chr3 108299833 108300184 -109736974 + MLT1A2 LTR MaLR 1 374 0 206 289 154 34 chr3 108300962 108301111 -109736047 - L2 LINE L2 -553 2761 2595 636 165 24 16 chr3 108301424 108301551 -109735607 + MLT1D LTR MaLR 1 128 -377 32 75 0 0 chr3 108301778 108301845 -109735313 + AT_rich Low_complexity Low_complexity 1 67 0 317 232 61 30 chr3 108301956 108302055 -109735103 + L1MC4 LINE L1 6602 6703 -1339 207 100 0 0 chr3 108302055 108302085 -109735073 + (TA)n Simple_repeat Simple_repeat 2 31 0 508 193 11 0 chr3 108302122 108302210 -109734948 + AluJ/FLAM SINE Alu 1 89 -223 396 287 81 84 chr3 108302215 108302472 -109734686 - L2 LINE L2 -817 2497 2240 4969 108 3 12 chr3 108302472 108303224 -109733934 + L1PA14 LINE L1 5415 6159 -2 396 287 81 84 chr3 108303224 108303325 -109733833 - L2 LINE L2 -1074 2240 2140 2047 148 35 22 chr3 108305128 108305194 -109731964 - THE1C LTR MaLR 0 375 311 4364 33 0 0 chr3 108305194 108305746 -109731412 + L1PA4 LINE L1 5633 6184 0 2047 148 35 22 chr3 108305746 108306044 -109731114 - THE1C LTR MaLR -64 311 5 22 25 0 25 chr3 108306075 108306089 -109731069 + AT_rich Low_complexity Low_complexity 1 14 -25 5577 102 14 2 chr3 108306089 108306925 -109730233 - L1MA3 LINE L1 0 7724 6879 22 25 0 25 chr3 108306925 108306950 -109730208 + AT_rich Low_complexity Low_complexity 14 39 0 14156 154 18 33 chr3 108306950 108306974 -109730184 - L1MA3 LINE L1 -675 6912 6889 5954 99 18 26 chr3 108306974 108308339 -109728819 - L1PA14 LINE L1 -4 6157 4786 14156 154 18 33 chr3 108308339 108311663 -109725495 - L1MA3 LINE L1 -698 6889 3517 2158 96 0 53 chr3 108311663 108311986 -109725172 - AluSg SINE Alu -4 306 1 14156 154 18 33 chr3 108311986 108312692 -109724466 - L1MA3 LINE L1 -4070 3517 2917 2844 7 0 0 chr3 108312692 108312997 -109724161 + AluYb8 SINE Alu 12 316 -2 14156 154 18 33 chr3 108312997 108313290 -109723868 - L1MA3 LINE L1 -4670 2917 2621 4963 248 87 13 chr3 108313294 108313355 -109723803 - L1PA12 LINE L1 -2109 5475 5420 2757 161 0 0 chr3 108313355 108313783 -109723375 - MSTA LTR MaLR 0 428 1 4963 248 87 13 chr3 108313783 108316719 -109720439 - L1PA12 LINE L1 -2164 5420 2236 1841 136 174 11 chr3 108316726 108317094 -109720064 + MSTA LTR MaLR 1 428 0 4845 152 8 55 chr3 108317097 108317974 -109719184 + MSTA-int LTR MaLR 4 839 -741 * 6126 178 4 44 chr3 108317972 108319128 -109718030 - L1M1 LINE L1 -5240 2325 1216 30 0 0 0 chr3 108319130 108319160 -109717998 + AT_rich Low_complexity Low_complexity 1 30 0 13902 157 54 17 chr3 108319160 108319524 -109717634 - L1PB1 LINE L1 0 7570 7221 261 0 0 0 chr3 108319524 108319553 -109717605 + (CA)n Simple_repeat Simple_repeat 2 30 0 13902 157 54 17 chr3 108319553 108322190 -109714968 - L1PB1 LINE L1 -349 7221 4684 210 37 0 0 chr3 108322190 108322217 -109714941 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 13902 157 54 17 chr3 108322217 108325231 -109711927 - L1PB1 LINE L1 -2886 4684 1337 943 209 10 0 chr3 108325231 108325427 -109711731 - L1PB1 LINE L1 -6663 903 706 4147 170 8 7 chr3 108325431 108326160 -109710998 - L1PB1 LINE L1 -6697 868 26 2201 93 13 32 chr3 108326752 108327065 -109710093 - AluY SINE Alu -4 307 1 21 36 0 0 chr3 108327068 108327096 -109710062 + AT_rich Low_complexity Low_complexity 1 28 0 5656 42 13 0 chr3 108327593 108328286 -109708872 + L1PA5 LINE L1 5452 6153 -1 229 226 0 0 chr3 108328429 108328482 -109708676 - L1ME3A LINE L1 -9 6161 6109 7516 87 8 20 chr3 108328493 108329563 -109707595 + MER11C LTR ERVK 1 1057 -14 207 167 0 0 chr3 108331546 108331588 -109705570 + A-rich Low_complexity Low_complexity 1 42 0 308 314 12 0 chr3 108331680 108331766 -109705392 + MIR3 SINE MIR 98 184 -24 1888 162 43 3 chr3 108333123 108333475 -109703683 + MER47A DNA MER2_type 1 366 0 460 289 46 54 chr3 108333625 108333864 -109703294 + MLT1L LTR MaLR 379 615 0 3613 213 62 35 chr3 108334159 108334506 -109702652 + L1MCa LINE L1 69 405 -5640 1517 198 96 3 chr3 108334506 108334840 -109702318 - MLT1A1 LTR MaLR 0 365 1 3613 213 62 35 chr3 108334840 108335525 -109701633 + L1MCa LINE L1 405 1048 -4997 846 197 14 0 chr3 108335528 108335675 -109701483 + MER5A DNA MER1_type 14 162 -27 242 208 21 0 chr3 108336493 108336541 -109700617 - L2 LINE L2 0 3313 3265 214 184 35 58 chr3 108336615 108336702 -109700456 + A-rich Low_complexity Low_complexity 5 89 0 1542 199 25 41 chr3 108337318 108337680 -109699478 + MLT1A1 LTR MaLR 10 365 0 2406 174 58 9 chr3 108338606 108339162 -109697996 + L1 LINE L1 3126 3708 -2438 497 289 136 30 chr3 108339557 108339858 -109697300 + HAL1 LINE L1 1423 1755 -752 460 273 102 8 chr3 108340215 108340409 -109696749 - MIR SINE MIR -2 260 1 317 236 69 0 chr3 108340576 108340648 -109696510 - MLT1H1 LTR MaLR -18 537 461 297 267 82 82 chr3 108340655 108340850 -109696308 - MLT1H1 LTR MaLR -208 341 147 214 350 178 19 chr3 108341243 108341400 -109695758 + MIR3 SINE MIR 16 197 -11 20197 176 24 21 chr3 108341508 108347738 -109689420 + L1M1 LINE L1 18 6272 -1293 488 210 48 8 chr3 108398422 108398546 -109638612 + MIR SINE MIR 14 142 -120 569 174 0 26 chr3 108398930 108399045 -109638113 - L1PA15-16 LINE L1 -4199 2650 2539 241 190 63 13 chr3 108399046 108399125 -109638033 + LTR41 LTR ERVL 105 187 -586 446 232 46 33 chr3 108401252 108401403 -109635755 + L1ME LINE L1 5615 5767 -354 960 227 42 42 chr3 108401650 108401910 -109635248 + LTR40a LTR ERVL 260 519 0 762 189 67 33 chr3 108402157 108402337 -109634821 - MER5A DNA MER1_type 0 189 4 389 241 85 43 chr3 108402356 108402497 -109634661 + MIR SINE MIR 3 149 -113 215 284 98 29 chr3 108402717 108402819 -109634339 + MIR SINE MIR 120 228 -34 188 208 42 0 chr3 108402937 108402985 -109634173 - L2 LINE L2 -86 3227 3178 205 361 132 7 chr3 108403040 108403184 -109633974 + MIR3 SINE MIR 32 193 -15 285 51 0 0 chr3 108404246 108404285 -109632873 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 1136 53 13 0 chr3 108404285 108404436 -109632722 - L1PA5 LINE L1 -16 6138 5986 413 281 48 0 chr3 108404665 108404811 -109632347 - L1MA10 LINE L1 -13 6321 6169 8685 153 28 11 chr3 108404899 108406421 -109630737 - Ricksha DNA DNA -9 3237 1690 603 224 14 14 chr3 108406467 108406614 -109630544 - Ricksha DNA DNA -3099 147 1 2277 226 75 5 chr3 108406621 108407245 -109629913 - L1ME2 LINE L1 -208 5956 5289 588 232 42 26 chr3 108407246 108407436 -109629722 - L1ME2 LINE L1 -2724 3422 3230 2446 183 9 36 chr3 108407451 108407981 -109629177 - L1MA7 LINE L1 -2 6289 5774 1992 158 5 8 chr3 108407988 108408361 -109628797 - L1MA4 LINE L1 -1 6299 5928 2241 160 51 58 chr3 108408361 108408903 -109628255 - L1MCa LINE L1 -4173 2253 1198 193 329 129 0 chr3 108409007 108409092 -109628066 + MIR3 SINE MIR 67 162 -46 25 51 0 0 chr3 108409190 108409229 -109627929 + AT_rich Low_complexity Low_complexity 1 39 0 524 333 92 4 chr3 108409229 108409469 -109627689 - MIR SINE MIR 0 262 2 22 0 0 0 chr3 108409678 108409700 -109627458 + AT_rich Low_complexity Low_complexity 1 22 0 228 365 37 0 chr3 108409997 108410104 -109627054 - MIR SINE MIR -132 130 20 721 160 8 156 chr3 108411129 108411367 -109625791 + MER3 DNA MER1_type 7 209 0 374 205 0 48 chr3 108411367 108411407 -109625751 - MER3 DNA MER1_type -162 47 12 416 275 35 28 chr3 108412612 108412754 -109624404 - L3 LINE CR1 -127 1450 1308 614 186 77 49 chr3 108412754 108413062 -109624096 + L1ME2 LINE L1 4274 4667 -1479 2645 240 58 13 chr3 108413169 108413923 -109623235 + L1ME2 LINE L1 5366 6153 -11 2160 180 27 27 chr3 108414017 108414455 -109622703 + MER66B LTR ERV1 1 438 -48 870 242 0 0 chr3 108415199 108415381 -109621777 + MER45 DNA AcHobo 2 183 -1398 1917 202 133 41 chr3 108417079 108417659 -109619499 - MER92B LTR ERV1 0 636 4 1127 268 132 57 chr3 108418542 108419520 -109617638 - HAL1 LINE L1 -608 1899 849 262 333 0 0 chr3 108419572 108419656 -109617502 - HAL1 LINE L1 -1616 891 808 2641 186 25 11 chr3 108420357 108420888 -109616270 + MER34 LTR ERV1 1 538 -4 30 0 0 0 chr3 108420915 108420945 -109616213 + AT_rich Low_complexity Low_complexity 1 30 0 203 206 0 0 chr3 108421282 108421316 -109615842 + L2 LINE L2 3261 3294 -19 743 321 90 31 chr3 108421415 108421981 -109615177 - L2 LINE L2 -38 3275 2666 597 282 68 36 chr3 108421980 108422232 -109614926 + L2 LINE L2 3050 3309 -4 * 793 300 162 38 chr3 108422247 108422981 -109614177 - L2 LINE L2 -653 2661 1827 2318 128 11 22 chr3 108422981 108423349 -109613809 - THE1B LTR MaLR 0 364 1 793 300 162 38 chr3 108423349 108423380 -109613778 - L2 LINE L2 -1487 1827 1801 247 189 29 29 chr3 108423521 108423696 -109613462 + (TTATA)n Simple_repeat Simple_repeat 4 178 0 265 276 11 11 chr3 108423920 108424007 -109613151 + MIR SINE MIR 111 197 -65 252 288 15 0 chr3 108424179 108424245 -109612913 + L2 LINE L2 3201 3267 -5 274 243 139 35 chr3 108425763 108425907 -109611251 + L1ME4a LINE L1 5961 6119 -2 219 167 0 0 chr3 108426549 108426585 -109610573 - L2 LINE L2 -5 3267 3232 291 250 228 11 chr3 108426714 108426806 -109610352 + L2 LINE L2 3201 3312 -1 2069 209 33 48 chr3 108427295 108427841 -109609317 + L1ME2 LINE L1 5621 6158 -6 321 311 68 23 chr3 108427899 108428031 -109609127 - L2 LINE L2 -12 3260 3123 1080 282 101 14 chr3 108428653 108429001 -109608157 + MLT1F1 LTR MaLR 188 565 -2 535 111 0 12 chr3 108429232 108429313 -109607845 - MADE1 DNA Mariner 0 80 1 528 229 103 23 chr3 108429991 108430166 -109606992 - MER5A DNA MER1_type 0 189 1 551 274 50 73 chr3 108430229 108430448 -109606710 + MLT1F1 LTR MaLR 303 516 -51 412 276 109 35 chr3 108430464 108430638 -109606520 + MLT1J2 LTR MaLR 60 246 -204 3397 279 62 34 chr3 108430699 108432449 -109604709 + ERVL LTR ERVL 3402 5236 -528 1439 194 16 28 chr3 108432639 108432958 -109604200 - MLT1B LTR MaLR -7 383 69 261 295 62 18 chr3 108433274 108433386 -109603772 + MLT2F LTR ERVL 38 154 -509 196 400 0 0 chr3 108434518 108434588 -109602570 + MIR3 SINE MIR 136 205 -3 298 303 0 22 chr3 108435513 108435602 -109601556 - MIR3 SINE MIR -5 203 117 455 232 51 22 chr3 108436390 108436528 -109600630 - MIR SINE MIR -16 246 105 21 36 0 0 chr3 108436796 108436824 -109600334 + AT_rich Low_complexity Low_complexity 1 28 0 640 199 96 7 chr3 108438612 108438758 -109598400 + MIR SINE MIR 1 159 -103 287 303 34 0 chr3 108439032 108439121 -109598037 + MIR SINE MIR 150 241 -21 2337 48 0 38 chr3 108439187 108439501 -109597657 + AluY SINE Alu 1 302 -9 692 189 26 33 chr3 108439502 108439655 -109597503 - L1MB1 LINE L1 -239 5929 5778 1048 148 11 28 chr3 108439720 108439902 -109597256 - L1MB1 LINE L1 -375 5793 5615 * 7445 204 20 64 chr3 108439892 108441601 -109595557 + L1M2c LINE L1 638 2270 -4519 1712 186 43 10 chr3 108441587 108442001 -109595157 + L1M2c LINE L1 3580 4007 -2781 * 411 197 13 0 chr3 108442001 108442077 -109595081 + FLAM_C SINE Alu 32 108 -25 31 0 0 0 chr3 108442082 108442113 -109595045 + AT_rich Low_complexity Low_complexity 1 31 0 2195 115 0 0 chr3 108442113 108442192 -109594966 - L1PB1 LINE L1 -1 6150 6072 10338 187 29 14 chr3 108442192 108442427 -109594731 - L1PA7 LINE L1 -87 6783 6553 531 0 0 0 chr3 108442427 108442486 -109594672 + (TA)n Simple_repeat Simple_repeat 1 59 0 10338 187 29 14 chr3 108442486 108445290 -109591868 - L1PA7 LINE L1 -317 6553 3689 953 122 27 0 chr3 108445295 108445442 -109591716 - AluJb SINE Alu -16 296 146 719 272 46 0 chr3 108445522 108445739 -109591419 - L1PA7 LINE L1 -6631 232 6 21 36 0 0 chr3 108447104 108447132 -109590026 + AT_rich Low_complexity Low_complexity 1 28 0 282 286 163 0 chr3 108447884 108447982 -109589176 - MIR SINE MIR -74 188 75 27 62 0 0 chr3 108449442 108449490 -109587668 + AT_rich Low_complexity Low_complexity 1 48 0 1939 157 3 0 chr3 108449630 108449924 -109587234 - AluSx SINE Alu -17 295 1 495 133 0 0 chr3 108450129 108450212 -109586946 - L1PA16 LINE L1 -15 6151 6069 346 120 0 0 chr3 108450212 108450266 -109586892 + L1P LINE L1 5336 5392 -762 682 115 34 0 chr3 108452620 108452831 -109584327 + (TA)n Simple_repeat Simple_repeat 1 218 0 315 194 0 0 chr3 108452936 108453034 -109584124 + (TA)n Simple_repeat Simple_repeat 2 99 0 189 341 136 0 chr3 108453559 108453647 -109583511 - MIR SINE MIR 0 262 163 4462 155 23 10 chr3 108453673 108454493 -109582665 + L1MA4 LINE L1 5464 6294 -6 22 0 0 0 chr3 108454508 108454530 -109582628 + AT_rich Low_complexity Low_complexity 1 22 0 195 261 0 0 chr3 108454544 108454590 -109582568 - MIR SINE MIR -121 141 96 254 349 81 10 chr3 108456272 108456470 -109580688 - MARNA DNA Mariner -110 476 265 306 316 29 46 chr3 108456503 108456677 -109580481 - MARNA DNA Mariner -376 210 40 552 289 48 21 chr3 108457988 108458175 -109578983 - MIR SINE MIR -8 254 63 253 376 15 23 chr3 108458289 108458422 -109578736 + L2 LINE L2 3141 3272 0 1953 116 0 75 chr3 108459401 108459721 -109577437 + AluSq SINE Alu 1 296 -17 312 91 0 0 chr3 108460904 108460948 -109576210 + (TG)n Simple_repeat Simple_repeat 2 45 0 420 274 59 59 chr3 108461053 108461239 -109575919 + MIR SINE MIR 20 205 -57 1936 116 0 51 chr3 108461653 108461964 -109575194 - AluSx SINE Alu -11 301 7 2747 236 74 13 chr3 108462393 108463164 -109573994 + MER99 DNA DNA 2 819 -9 452 267 87 12 chr3 108463190 108463351 -109573807 - MER5B DNA MER1_type 0 178 6 366 310 167 14 chr3 108463791 108464078 -109573080 - HAL1 LINE L1 -8 2499 2169 641 255 78 86 chr3 108464586 108464853 -109572305 - HAL1 LINE L1 -921 1586 1318 2589 42 0 6 chr3 108464853 108465165 -109571993 - AluY SINE Alu -1 310 1 641 255 78 86 chr3 108465165 108465435 -109571723 - HAL1 LINE L1 -1189 1318 1019 264 30 0 0 chr3 108465435 108465457 -109571701 + (TG)n Simple_repeat Simple_repeat 1 55 0 264 30 0 0 chr3 108465457 108465490 -109571668 + (TG)n Simple_repeat Simple_repeat 2 34 0 641 255 78 86 chr3 108465490 108465629 -109571529 - HAL1 LINE L1 -1488 1019 880 1883 186 52 93 chr3 108467964 108468482 -109568676 + MLT1D LTR MaLR 2 567 0 734 286 121 12 chr3 108468715 108469061 -109568097 - HsTC2 DNA Tc2 -1008 890 507 246 289 54 108 chr3 108469099 108469376 -109567782 - HsTC2 DNA Tc2 -1636 262 1 314 314 25 8 chr3 108469412 108469530 -109567628 - MIR SINE MIR -129 133 14 504 286 189 19 chr3 108469642 108469848 -109567310 + MIR SINE MIR 8 248 -14 240 286 22 55 chr3 108471136 108471227 -109565931 + MIR SINE MIR 29 116 -92 282 116 0 0 chr3 108471669 108471712 -109565446 + (CA)n Simple_repeat Simple_repeat 1 43 0 483 338 111 23 chr3 108471857 108472245 -109564913 + L2 LINE L2 2534 2955 -359 225 94 0 0 chr3 108472598 108472630 -109564528 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1932 150 0 0 chr3 108472633 108472913 -109564245 - AluSx SINE Alu -32 280 1 22 0 0 0 chr3 108473454 108473476 -109563682 + AT_rich Low_complexity Low_complexity 1 22 0 182 231 0 0 chr3 108475079 108475118 -109562040 - L2 LINE L2 0 3313 3275 339 214 29 50 chr3 108475715 108475855 -109561303 - L1MC5 LINE L1 -51 7910 7774 474 65 0 0 chr3 108479068 108479130 -109558028 + (TA)n Simple_repeat Simple_repeat 2 63 0 259 326 136 20 chr3 108479262 108479409 -109557749 - L2 LINE L2 0 3272 3109 348 271 73 20 chr3 108479432 108479583 -109557575 + LTR68 LTR ERV1 7 165 -575 370 294 65 68 chr3 108479677 108479956 -109557202 - MLT1J LTR MaLR -10 501 224 881 197 96 115 chr3 108480696 108481132 -109556026 - MSTC LTR MaLR 0 428 1 866 318 127 51 chr3 108483239 108483489 -109553669 + L3 LINE CR1 674 904 -673 1955 142 71 102 chr3 108483489 108483968 -109553190 - MLT2C2 LTR ERVL 0 464 1 866 318 127 51 chr3 108483968 108484481 -109552677 + L3 LINE CR1 904 1495 -82 25 31 0 0 chr3 108484824 108484856 -109552302 + AT_rich Low_complexity Low_complexity 1 32 0 305 247 21 97 chr3 108485545 108485731 -109551427 + Charlie8 DNA MER1_type 90 261 -2156 330 107 18 0 chr3 108488311 108488367 -109548791 - L1MA4 LINE L1 -9 6291 6235 223 268 0 0 chr3 108489562 108489618 -109547540 + A-rich Low_complexity Low_complexity 1 56 0 1334 226 46 3 chr3 108492068 108492391 -109544767 - MER58B DNA MER1_type -3 338 2 21 0 0 0 chr3 108493613 108493634 -109543524 + AT_rich Low_complexity Low_complexity 1 21 0 234 366 76 23 chr3 108493812 108493943 -109543215 - L2 LINE L2 -2 3270 3133 1041 216 15 0 chr3 108493953 108494152 -109543006 + MER20 DNA MER1_type 18 219 0 307 341 11 0 chr3 108495062 108495150 -109542008 + MER5B DNA MER1_type 89 177 -1 21 0 0 0 chr3 108495271 108495292 -109541866 + AT_rich Low_complexity Low_complexity 1 21 0 355 206 40 143 chr3 108496320 108496543 -109540615 + MER112 DNA MER1_type 3 202 -58 193 208 226 0 chr3 108497625 108497678 -109539480 - MIR SINE MIR -62 146 82 474 65 0 0 chr3 108497791 108497853 -109539305 + (CA)n Simple_repeat Simple_repeat 2 63 0 2356 93 0 0 chr3 108497915 108498215 -109538943 + AluSq SINE Alu 1 300 -13 268 297 83 48 chr3 108499263 108499408 -109537750 - MIR3 SINE MIR -14 194 45 23 0 0 0 chr3 108500344 108500367 -109536791 + AT_rich Low_complexity Low_complexity 1 23 0 314 138 17 0 chr3 108500393 108500451 -109536707 + (TA)n Simple_repeat Simple_repeat 1 59 0 303 266 74 115 chr3 108501108 108501420 -109535738 + L1MC4 LINE L1 7595 7893 -149 210 71 0 0 chr3 108501439 108501467 -109535691 + (TAGA)n Simple_repeat Simple_repeat 2 29 0 246 331 48 16 chr3 108501565 108501689 -109535469 + L2 LINE L2 2428 2555 -759 190 368 0 13 chr3 108501719 108501795 -109535363 + L2 LINE L2 2728 2802 -512 398 301 127 51 chr3 108501908 108502240 -109534918 + L2 LINE L2 2955 3311 -2 26 0 0 0 chr3 108502562 108502588 -109534570 + AT_rich Low_complexity Low_complexity 1 26 0 2159 125 0 0 chr3 108503306 108503609 -109533549 + AluSq SINE Alu 1 303 -10 467 284 26 72 chr3 108504580 108504844 -109532314 + L2 LINE L2 3048 3299 -14 532 293 123 14 chr3 108504950 108505162 -109531996 + MIR SINE MIR 10 244 -18 2308 63 3 10 chr3 108505206 108505508 -109531650 - AluY SINE Alu -11 300 1 362 259 176 24 chr3 108505741 108505911 -109531247 + MIR SINE MIR 53 248 -14 250 393 86 8 chr3 108507112 108507229 -109529929 - MER91A DNA MER1_type -70 126 1 2434 66 0 0 chr3 108507317 108507621 -109529537 - AluY SINE Alu -7 304 1 22 0 0 0 chr3 108508015 108508037 -109529121 + AT_rich Low_complexity Low_complexity 1 22 0 235 347 96 41 chr3 108508230 108508449 -109528709 + MIR SINE MIR 26 256 -6 357 256 144 33 chr3 108511250 108511520 -109525638 - L1MC5 LINE L1 -30 7931 7632 448 242 67 46 chr3 108511555 108511795 -109525363 - L1MC5 LINE L1 -425 7536 7292 535 302 106 51 chr3 108511834 108512304 -109524854 - L2 LINE L2 -575 2739 2244 186 43 0 0 chr3 108512411 108512434 -109524724 + (A)n Simple_repeat Simple_repeat 1 23 0 429 323 30 18 chr3 108512999 108513166 -109523992 + MER5A DNA MER1_type 21 189 0 3874 155 30 4 chr3 108513222 108513914 -109523244 - MER67C LTR ERV1 0 710 1 441 66 0 0 chr3 108513984 108514045 -109523113 + (CA)n Simple_repeat Simple_repeat 2 62 0 23 92 0 0 chr3 108514050 108514115 -109523043 + AT_rich Low_complexity Low_complexity 1 65 0 24 0 0 0 chr3 108515303 108515327 -109521831 + AT_rich Low_complexity Low_complexity 1 24 0 486 267 170 0 chr3 108517221 108517356 -109519802 + MER5A DNA MER1_type 32 189 0 22 0 0 0 chr3 108517583 108517605 -109519553 + AT_rich Low_complexity Low_complexity 1 22 0 454 337 146 3 chr3 108518048 108518342 -109518816 + L2 LINE L2 2152 2487 -827 325 289 115 19 chr3 108518472 108518628 -109518530 + L2 LINE L2 3134 3304 -9 2227 113 0 0 chr3 108518751 108519044 -109518114 - AluSc SINE Alu -16 293 1 688 309 71 30 chr3 108519057 108519520 -109517638 + Tigger8 DNA MER2_type 48 529 -137 410 303 83 64 chr3 108520831 108521049 -109516109 + L2 LINE L2 2939 3160 -112 1576 204 39 0 chr3 108521053 108521362 -109515796 + Tigger7 DNA MER2_type 1 321 -2166 977 169 17 0 chr3 108521376 108521548 -109515610 + Tigger7 DNA MER2_type 2317 2491 0 366 369 127 16 chr3 108521632 108521876 -109515282 - L2 LINE L2 -59 3213 2943 692 232 31 21 chr3 108521930 108522124 -109515034 - L1ME3 LINE L1 -9 6153 5958 454 331 112 29 chr3 108522191 108522505 -109514653 - L2 LINE L2 -452 2862 2523 1792 165 59 82 chr3 108523194 108523668 -109513490 - MLT1C LTR MaLR -4 463 1 387 0 0 0 chr3 108523795 108523838 -109513320 + (TG)n Simple_repeat Simple_repeat 1 43 0 335 313 16 23 chr3 108525332 108525460 -109511698 - MER20B DNA MER1_type -612 171 45 2119 124 0 0 chr3 108526254 108526537 -109510621 + AluSx SINE Alu 1 283 -29 206 286 132 0 chr3 108527222 108527313 -109509845 - L2 LINE L2 0 3272 3170 464 47 0 16 chr3 108528207 108528271 -109508887 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 290 264 164 9 chr3 108529038 108529148 -109508010 - L2 LINE L2 0 3313 3187 2615 39 0 3 chr3 108530484 108530796 -109506362 + AluY SINE Alu 1 311 0 1374 142 37 64 chr3 108531372 108531668 -109505490 - L1MC2 LINE L1 -29 6315 6028 629 184 58 58 chr3 108532703 108532909 -109504249 + MSTC LTR MaLR 223 428 0 654 255 65 22 chr3 108533063 108533154 -109504004 - MER58C DNA MER1_type -2205 215 129 297 118 0 0 chr3 108533154 108533205 -109503953 + (TTGG)n Simple_repeat Simple_repeat 2 52 0 654 255 65 22 chr3 108533205 108533297 -109503861 - MER58C DNA MER1_type -2291 129 24 755 231 152 48 chr3 108533375 108533871 -109503287 - MLT1G1 LTR MaLR -5 590 2 21 0 0 0 chr3 108535685 108535706 -109501452 + AT_rich Low_complexity Low_complexity 1 21 0 261 255 105 72 chr3 108536794 108536947 -109500211 + L3b LINE CR1 1104 1261 -322 596 49 12 0 chr3 108539504 108539586 -109497572 - L1MA1 LINE L1 -4 6298 6216 2296 79 0 35 chr3 108539682 108539998 -109497160 + AluY SINE Alu 7 311 0 376 296 119 8 chr3 108540951 108541211 -109495947 + L1ME4a LINE L1 5501 5789 -332 318 236 115 13 chr3 108541386 108541543 -109495615 + L1ME4a LINE L1 5927 6099 -22 192 184 0 46 chr3 108542657 108542744 -109494414 + A-rich Low_complexity Low_complexity 2 84 0 1264 278 101 24 chr3 108543330 108543755 -109493403 + L1MC4a LINE L1 4724 4748 -1398 396 0 0 0 chr3 108543755 108543799 -109493359 + (CA)n Simple_repeat Simple_repeat 2 45 0 1264 278 101 24 chr3 108543799 108544505 -109492653 + L1MC4a LINE L1 4748 5398 -748 240 315 96 14 chr3 108545186 108545259 -109491899 - L2 LINE L2 0 3272 3194 327 49 0 0 chr3 108546637 108546678 -109490480 + (CA)n Simple_repeat Simple_repeat 1 41 0 2169 101 0 0 chr3 108546699 108546986 -109490172 - AluSg SINE Alu -10 300 14 391 298 21 0 chr3 108547020 108547161 -109489997 + LTR33 LTR ERVL 24 167 -354 249 241 76 13 chr3 108547269 108547348 -109489810 + LTR33 LTR ERVL 429 512 -9 226 273 30 0 chr3 108547430 108547496 -109489662 + (CATA)n Simple_repeat Simple_repeat 3 70 0 259 372 31 16 chr3 108547579 108547708 -109489450 + MIR SINE MIR 17 147 -61 2371 90 0 0 chr3 108548173 108548472 -109488686 + AluSx SINE Alu 1 299 -13 2261 124 52 9 chr3 108548784 108549132 -109488026 - THE1B LTR MaLR 0 364 2 21 36 0 0 chr3 108549503 108549531 -109487627 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 108549631 108549653 -109487505 + AT_rich Low_complexity Low_complexity 1 22 0 312 286 62 9 chr3 108550327 108550439 -109486719 - L2 LINE L2 -31 3241 3124 378 233 0 29 chr3 108551970 108552073 -109485085 + MIR SINE MIR 122 221 -41 25 31 0 0 chr3 108555072 108555104 -109482054 + AT_rich Low_complexity Low_complexity 1 32 0 775 324 63 47 chr3 108555447 108555935 -109481223 - L3 LINE CR1 -82 1495 1000 1731 194 93 0 chr3 108555960 108556325 -109480833 + MLT2C2 LTR ERVL 1 399 -65 1063 211 15 0 chr3 108556804 108557003 -109480155 + MER20 DNA MER1_type 18 219 0 21 0 0 0 chr3 108559248 108559269 -109477889 + GC_rich Low_complexity Low_complexity 1 21 0 1288 108 21 37 chr3 108560185 108560426 -109476732 + L1PA13 LINE L1 5925 6161 -2 22 35 0 0 chr3 108560567 108560596 -109476562 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr3 108561344 108561374 -109475784 + AT_rich Low_complexity Low_complexity 1 30 0 456 266 158 23 chr3 108562338 108562515 -109474643 + MIR SINE MIR 55 255 -7 198 320 158 20 chr3 108562788 108562991 -109474167 + L2 LINE L2 2629 2859 -455 1535 181 0 11 chr3 108563206 108563471 -109473687 - AluJb SINE Alu -27 285 24 2123 118 7 0 chr3 108566710 108567007 -109470151 + AluSx SINE Alu 4 302 -10 213 200 0 0 chr3 108567151 108567191 -109469967 - MIR SINE MIR -152 110 71 1181 118 0 18 chr3 108568761 108568930 -109468228 + THE1C LTR MaLR 1 166 -209 7087 141 22 6 chr3 108568935 108570038 -109467120 + THE1C-int LTR MaLR 461 1580 0 1908 146 89 17 chr3 108570038 108570388 -109466770 + THE1C LTR MaLR 1 375 0 205 306 81 0 chr3 108570790 108570852 -109466306 - MIR SINE MIR -66 142 76 229 231 31 15 chr3 108570876 108570941 -109466217 + LTR33 LTR ERVL 10 75 -446 305 297 55 55 chr3 108572177 108572305 -109464853 - L2 LINE L2 0 3272 3145 231 180 0 33 chr3 108572749 108572810 -109464348 + (TTCA)n Simple_repeat Simple_repeat 2 60 0 192 310 90 55 chr3 108573089 108573234 -109463924 + MIR SINE MIR 58 207 -55 2406 70 0 13 chr3 108575558 108575873 -109461285 - AluY SINE Alu 0 311 1 184 376 43 26 chr3 108577774 108577891 -109459267 + MIR3 SINE MIR 3 121 -87 2756 248 107 19 chr3 108577980 108578859 -109458299 - L1MEc LINE L1 -1261 5383 4364 2047 115 49 25 chr3 108578859 108579225 -109457933 + THE1C LTR MaLR 1 375 0 2756 248 107 19 chr3 108579225 108579565 -109457593 - L1MEc LINE L1 -2280 4364 4056 614 252 137 11 chr3 108579569 108579942 -109457216 - L1MEc LINE L1 -2750 3894 3475 692 223 29 17 chr3 108579945 108580183 -109456975 - L1MEc LINE L1 -3195 3449 3209 1805 199 0 38 chr3 108580183 108580337 -109456821 + MLT1A1 LTR MaLR 8 166 -199 2395 60 0 10 chr3 108580337 108580637 -109456521 + AluY SINE Alu 1 297 -14 1805 199 0 38 chr3 108580637 108580854 -109456304 + MLT1A1 LTR MaLR 166 365 0 224 201 35 49 chr3 108580986 108581130 -109456028 + (TATAA)n Simple_repeat Simple_repeat 4 145 0 * 388 208 46 12 chr3 108581029 108581202 -109455956 + (TA)n Simple_repeat Simple_repeat 2 180 0 2119 102 10 16 chr3 108581203 108581507 -109455651 - AluSq SINE Alu -11 302 1 761 271 69 71 chr3 108581532 108582472 -109454686 - L1MEc LINE L1 -4565 2079 1033 595 296 29 21 chr3 108583049 108583289 -109453869 - L1MEc LINE L1 -6123 702 461 316 296 0 9 chr3 108583689 108583797 -109453361 + GA-rich Low_complexity Low_complexity 2 108 0 294 207 12 24 chr3 108583887 108583969 -109453189 + MLT1K LTR MaLR 507 587 -1 26 30 0 0 chr3 108584775 108584808 -109452350 + AT_rich Low_complexity Low_complexity 1 33 0 237 83 0 0 chr3 108585478 108585514 -109451644 + (TG)n Simple_repeat Simple_repeat 1 36 0 222 253 24 36 chr3 108586653 108586736 -109450422 - L2 LINE L2 -6 3266 3185 2541 30 0 7 chr3 108586826 108587123 -109450035 - AluY SINE Alu -16 295 1 322 386 121 5 chr3 108587709 108587924 -109449234 + L2 LINE L2 2738 2977 -337 242 245 66 94 chr3 108590381 108590487 -109446671 + MER5A DNA MER1_type 87 189 0 237 355 32 16 chr3 108590488 108590612 -109446546 - MIR SINE MIR -64 144 19 355 171 49 0 chr3 108590655 108590737 -109446421 + L1MB5 LINE L1 6089 6174 0 353 85 0 17 chr3 108591348 108591407 -109445751 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 28 61 0 0 chr3 108591694 108591743 -109445415 + AT_rich Low_complexity Low_complexity 1 49 0 344 290 33 79 chr3 108592445 108592659 -109444499 + MIR3 SINE MIR 2 205 -3 2250 111 3 3 chr3 108594703 108595009 -109442149 - AluSg SINE Alu -4 306 1 306 321 64 21 chr3 108595592 108595732 -109441426 + L2 LINE L2 3168 3313 0 315 171 62 159 chr3 108596393 108596569 -109440589 - MLT1F LTR MaLR -32 535 352 2285 116 0 0 chr3 108596681 108596991 -109440167 - AluSx SINE Alu -1 311 2 517 282 12 40 chr3 108596998 108597210 -109439948 - MLT1F LTR MaLR -354 188 18 186 401 7 33 chr3 108597557 108597709 -109439449 + L2 LINE L2 2816 2963 -309 213 342 123 7 chr3 108598052 108598207 -109438951 + L2 LINE L2 2263 2435 -879 2226 116 0 6 chr3 108598425 108598736 -109438422 - AluSx SINE Alu -2 310 2 248 321 12 0 chr3 108600759 108600840 -109436318 + MIR SINE MIR 108 189 -73 23 0 0 0 chr3 108600868 108600891 -109436267 + AT_rich Low_complexity Low_complexity 1 23 0 37 23 0 0 chr3 108601056 108601100 -109436058 + AT_rich Low_complexity Low_complexity 1 44 0 718 266 47 40 chr3 108601488 108601763 -109435395 + MLT1J LTR MaLR 179 455 -56 717 272 109 13 chr3 108602338 108602577 -109434581 - MIR SINE MIR 0 262 1 433 181 106 0 chr3 108602697 108602791 -109434367 - MER103 DNA DNA -62 104 1 1630 181 7 20 chr3 108603000 108603304 -109433854 - AluJo SINE Alu 0 312 13 305 279 13 13 chr3 108603755 108603834 -109433324 - L2 LINE L2 -279 2993 2915 348 304 76 43 chr3 108604995 108605179 -109431979 - MIR SINE MIR -70 192 3 1741 171 7 3 chr3 108605353 108605640 -109431518 + AluSx SINE Alu 3 290 -22 197 139 23 0 chr3 108605887 108605930 -109431228 + (CTAAA)n Simple_repeat Simple_repeat 2 45 0 235 278 40 87 chr3 108607081 108607207 -109429951 + L3b LINE CR1 1342 1461 -122 335 395 16 0 chr3 108607689 108607818 -109429340 - MIR SINE MIR -112 150 20 1748 144 25 7 chr3 108607923 108608200 -109428958 - AluSx SINE Alu -26 286 5 225 326 22 0 chr3 108608387 108608479 -109428679 - MIR3 SINE MIR -3 205 112 1869 144 14 3 chr3 108608900 108609192 -109427966 - AluSx SINE Alu -17 295 1 716 263 63 33 chr3 108610104 108610405 -109426753 + MER46C DNA MER2_type 29 338 0 207 0 0 0 chr3 108610711 108610734 -109426424 + (TAA)n Simple_repeat Simple_repeat 2 24 0 479 281 37 0 chr3 108612206 108612341 -109424817 + MLT1K LTR MaLR 447 586 -2 21 0 0 0 chr3 108612831 108612852 -109424306 + AT_rich Low_complexity Low_complexity 1 21 0 308 128 0 0 chr3 108613969 108614016 -109423142 + MLT2B2 LTR ERVL 1 47 -468 1233 184 165 28 chr3 108614518 108614954 -109422204 - LTR54B LTR ERV1 -2 496 1 1264 204 47 7 chr3 108616389 108616668 -109420490 + L1MD2 LINE L1 6057 6346 -13 1587 254 18 10 chr3 108616864 108617257 -109419901 - MSTD LTR MaLR 0 396 1 199 328 112 17 chr3 108617951 108618067 -109419091 - L2 LINE L2 -3 3310 3184 26 0 0 0 chr3 108618489 108618515 -109418643 + AT_rich Low_complexity Low_complexity 1 26 0 2036 111 10 14 chr3 108618522 108618810 -109418348 + AluSc SINE Alu 1 287 -22 382 335 156 5 chr3 108619956 108620168 -109416990 - MIR SINE MIR -1 261 18 1453 147 17 90 chr3 108620215 108620514 -109416644 + AluJo SINE Alu 1 277 -35 5048 151 22 20 chr3 108620660 108621507 -109415651 + Tigger2 DNA MER2_type 1870 2718 0 2765 167 18 52 chr3 108621507 108622548 -109414610 - L1M2 LINE L1 -521 6377 5372 216 0 0 0 chr3 108622553 108622577 -109414581 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2215 190 13 47 chr3 108622583 108623120 -109414038 - MER31-int LTR ERV1 -1843 5694 5176 198 258 41 72 chr3 108623120 108623217 -109413941 + L2 LINE L2 2376 2469 -845 1466 184 92 51 chr3 108623218 108623652 -109413506 - MER31-int LTR ERV1 -1728 3208 2757 9559 238 60 37 chr3 108623652 108626078 -109411080 - L1M2 LINE L1 -1349 5383 3014 216 0 0 0 chr3 108626078 108626102 -109411056 + (TG)n Simple_repeat Simple_repeat 2 25 0 9559 238 60 37 chr3 108626102 108626398 -109410760 - L1M2 LINE L1 -3718 3014 2726 195 100 0 0 chr3 108626398 108626428 -109410730 + (TG)n Simple_repeat Simple_repeat 1 30 0 9559 238 60 37 chr3 108626428 108628287 -109408871 - L1M2 LINE L1 -4006 2726 996 2917 3 0 0 chr3 108628362 108628680 -109408478 - AluYb8 SINE Alu 0 318 1 1400 158 64 42 chr3 108630034 108630345 -109406813 - THE1C LTR MaLR -57 318 1 5599 172 60 15 chr3 108630347 108631450 -109405708 - THE1C-int LTR MaLR -2 1578 427 1372 148 95 38 chr3 108631504 108631646 -109405512 - THE1C LTR MaLR -28 429 297 216 0 0 0 chr3 108631646 108631670 -109405488 + (GA)n Simple_repeat Simple_repeat 1 24 0 1372 148 95 38 chr3 108631670 108631853 -109405305 - THE1C LTR MaLR -160 297 1 423 261 106 0 chr3 108632122 108632264 -109404894 + MLT1J LTR MaLR 56 212 -299 492 325 112 0 chr3 108632305 108632502 -109404656 + MLT1J LTR MaLR 293 511 0 2027 127 14 0 chr3 108634387 108634679 -109402479 + AluSx SINE Alu 1 296 -16 269 309 27 41 chr3 108634847 108635142 -109402016 + L1M4 LINE L1 4314 4604 -1542 849 153 0 15 chr3 108636102 108636239 -109400919 - AluJo SINE Alu -177 135 1 25 75 0 0 chr3 108637169 108637222 -109399936 + AT_rich Low_complexity Low_complexity 1 53 0 395 247 0 0 chr3 108637951 108638036 -109399122 - Tigger5 DNA MER2_type 0 2323 2239 303 167 19 0 chr3 108638048 108638102 -109399056 - Tigger5 DNA MER2_type -2268 55 1 763 104 4 121 chr3 108640499 108640748 -109396410 + AluYa5 SINE Alu 89 308 -3 624 249 75 0 chr3 108641548 108641721 -109395437 + MER5A DNA MER1_type 4 189 0 509 332 63 10 chr3 108642005 108642210 -109394948 + MIR SINE MIR 20 235 -27 409 237 263 21 chr3 108642312 108642506 -109394652 + MIR SINE MIR 12 252 -10 1559 101 0 9 chr3 108642659 108642886 -109394272 - pTR5 LTR ERV1 -2042 396 172 276 242 30 20 chr3 108642892 108642991 -109394167 - LTR30 LTR ERV1 -79 643 544 3058 127 93 79 chr3 108642991 108643699 -109393459 - pTR5 LTR ERV1 -413 2025 1172 295 172 52 82 chr3 108643758 108643866 -109393292 + MIR SINE MIR 101 203 -59 486 281 37 0 chr3 108645239 108645374 -109391784 + MLT1K LTR MaLR 447 586 -2 21 0 0 0 chr3 108645864 108645885 -109391273 + AT_rich Low_complexity Low_complexity 1 21 0 306 128 0 0 chr3 108647001 108647048 -109390110 + MLT2B2 LTR ERVL 1 47 -468 1246 181 165 28 chr3 108647550 108647986 -109389172 - LTR54B LTR ERV1 -2 496 1 1269 204 47 7 chr3 108649421 108649700 -109387458 + L1MD2 LINE L1 6057 6346 -13 1580 254 18 10 chr3 108649896 108650289 -109386869 - MSTD LTR MaLR 0 396 1 244 284 63 58 chr3 108650427 108650617 -109386541 + L1MA9 LINE L1 6084 6274 -38 194 327 112 19 chr3 108650983 108651090 -109386068 - L2 LINE L2 -3 3310 3194 26 0 0 0 chr3 108651521 108651547 -109385611 + AT_rich Low_complexity Low_complexity 1 26 0 1979 115 10 14 chr3 108651554 108651842 -109385316 + AluSc SINE Alu 1 287 -22 184 219 0 0 chr3 108652907 108652939 -109384219 + MIR SINE MIR 116 147 -115 393 333 155 5 chr3 108652988 108653201 -109383957 - MIR SINE MIR 0 262 18 1458 147 17 90 chr3 108653248 108653547 -109383611 + AluJo SINE Alu 1 277 -35 5048 151 22 20 chr3 108653693 108654540 -109382618 + Tigger2 DNA MER2_type 1870 2718 0 2765 169 18 54 chr3 108654540 108655608 -109381550 - L1M2 LINE L1 -521 5615 4586 2215 190 13 47 chr3 108655616 108656153 -109381005 - MER31-int LTR ERV1 -1843 5694 5176 198 258 41 72 chr3 108656153 108656250 -109380908 + L2 LINE L2 2376 2469 -845 1466 184 92 51 chr3 108656251 108656685 -109380473 - MER31-int LTR ERV1 -1728 3208 2757 9608 239 60 38 chr3 108656685 108659110 -109378048 - L1M2 LINE L1 -1349 4621 2251 216 0 0 0 chr3 108659110 108659134 -109378024 + (TG)n Simple_repeat Simple_repeat 2 25 0 9608 239 60 38 chr3 108659134 108659426 -109377732 - L1M2 LINE L1 -3719 2251 1967 195 100 0 0 chr3 108659426 108659456 -109377702 + (TG)n Simple_repeat Simple_repeat 1 30 0 9608 239 60 38 chr3 108659456 108661319 -109375839 - L1M2 LINE L1 -4003 1967 252 1037 162 0 32 chr3 108661367 108661552 -109375606 - MLT1B LTR MaLR -211 179 1 707 282 112 29 chr3 108661733 108662109 -109375049 + L2 LINE L2 2304 2710 -604 347 296 34 0 chr3 108662643 108662731 -109374427 + L2 LINE L2 3217 3307 -6 348 109 0 0 chr3 108662777 108662823 -109374335 - L1P3 LINE L1 -6103 358 313 6541 70 9 10 chr3 108662823 108664180 -109372978 + L1PA7 LINE L1 4798 6154 0 183 156 0 0 chr3 108664311 108664343 -109372815 + A-rich Low_complexity Low_complexity 1 32 0 25 65 0 0 chr3 108664760 108664806 -109372352 + AT_rich Low_complexity Low_complexity 1 46 0 21 36 0 0 chr3 108664825 108664853 -109372305 + AT_rich Low_complexity Low_complexity 1 28 0 30 27 0 0 chr3 108666455 108666492 -109370666 + AT_rich Low_complexity Low_complexity 1 37 0 269 311 67 0 chr3 108667926 108668016 -109369142 + LTR16A1 LTR ERVL 6 101 -356 278 196 0 0 chr3 108668210 108668256 -109368902 - MER94 DNA DNA -74 60 15 322 304 104 25 chr3 108668639 108668879 -109368279 - L2 LINE L2 -1395 1919 1661 406 276 151 31 chr3 108668879 108669071 -109368087 - MIR SINE MIR 0 262 48 389 276 218 31 chr3 108669118 108669411 -109367747 - L2 LINE L2 -1652 1662 1315 237 279 48 19 chr3 108670632 108670736 -109366422 + L1ME LINE L1 5800 5906 -215 1789 134 0 46 chr3 108670746 108671030 -109366128 + AluJb SINE Alu 16 286 -26 194 0 39 0 chr3 108671033 108671059 -109366099 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 1819 72 30 19 chr3 108671114 108671379 -109365779 + L1PA8 LINE L1 5905 6172 0 2099 140 0 3 chr3 108671502 108671802 -109365356 + AluSx SINE Alu 1 299 -13 682 224 61 7 chr3 108671940 108672110 -109365048 + MIR SINE MIR 57 236 -26 1004 171 10 10 chr3 108673227 108673426 -109363732 - L1MB3 LINE L1 -4 6179 5981 218 174 43 0 chr3 108674928 108674974 -109362184 + (CAATT)n Simple_repeat Simple_repeat 3 50 0 1856 119 27 52 chr3 108675703 108676072 -109361086 - L1MA5 LINE L1 -1 6299 5940 1983 135 50 0 chr3 108676115 108676412 -109360746 - AluSx SINE Alu 0 312 1 1179 198 91 8 chr3 108677722 108677833 -109359325 + AluJo SINE Alu 7 107 -205 224 29 0 29 chr3 108677833 108677867 -109359291 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 1179 198 91 8 chr3 108677867 108677997 -109359161 + AluJo SINE Alu 107 268 -44 260 169 0 17 chr3 108678013 108678072 -109359086 + (TA)n Simple_repeat Simple_repeat 2 59 0 190 298 23 117 chr3 108679044 108679215 -109357943 - MIR SINE MIR -41 221 67 439 358 208 3 chr3 108679481 108679841 -109357317 - L2 LINE L2 -18 3295 2862 360 235 0 118 chr3 108680924 108681043 -109356115 + MIR SINE MIR 30 134 -74 209 363 0 0 chr3 108681070 108681150 -109356008 - L2 LINE L2 -5 3308 3229 248 259 127 54 chr3 108681151 108681317 -109355841 + MIR SINE MIR 85 262 0 1705 185 3 24 chr3 108681849 108682179 -109354979 - MLT2C1 LTR ERVL -72 325 3 221 355 103 28 chr3 108683341 108683631 -109353527 + L3b LINE CR1 1117 1428 -155 1045 198 176 141 chr3 108683803 108684399 -109352759 - MLT1E2 LTR MaLR 0 626 10 272 179 54 0 chr3 108684498 108684554 -109352604 - L2 LINE L2 0 3313 3255 2022 134 156 5 chr3 108686101 108686473 -109350685 + MSTA LTR MaLR 1 428 0 9053 176 20 9 chr3 108686473 108688106 -109349052 + MSTA-int LTR MaLR 1 1651 0 1987 154 141 3 chr3 108688106 108688482 -109348676 + MSTA LTR MaLR 1 428 0 370 123 46 0 chr3 108688822 108688887 -109348271 + L1MA5A LINE L1 6220 6287 -10 279 263 50 0 chr3 108689259 108689358 -109347800 + L2 LINE L2 2917 3020 -252 2383 79 10 0 chr3 108689385 108689688 -109347470 - AluY SINE Alu -5 306 1 443 204 133 72 chr3 108690229 108690410 -109346748 + MIR SINE MIR 13 204 -58 251 231 29 23 chr3 108690411 108690584 -109346574 + (TATAA)n Simple_repeat Simple_repeat 5 178 0 * 373 182 33 44 chr3 108690494 108690675 -109346483 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 264 122 0 0 chr3 108690682 108690723 -109346435 + (CA)n Simple_repeat Simple_repeat 2 42 0 2424 117 28 14 chr3 108691405 108691764 -109345394 - THE1B LTR MaLR 0 364 1 256 384 18 0 chr3 108692064 108692176 -109344982 + MER81 DNA DNA 1 114 0 553 207 14 48 chr3 108692176 108692321 -109344837 + MIR SINE MIR 72 211 -51 1662 224 75 33 chr3 108692342 108692823 -109344335 - MLT1D LTR MaLR 0 505 5 216 297 77 11 chr3 108692841 108692932 -109344226 + MIR SINE MIR 100 196 -66 1844 133 28 14 chr3 108693416 108693702 -109343456 - AluSg SINE Alu -20 290 1 1630 224 46 24 chr3 108693815 108694270 -109342888 - MLT1C LTR MaLR -2 465 1 994 135 11 6 chr3 108694476 108694654 -109342504 + CT-rich Low_complexity Low_complexity 2 180 0 342 271 89 67 chr3 108694702 108694927 -109342231 + MLT1K LTR MaLR 309 538 -50 476 215 242 27 chr3 108694986 108695135 -109342023 - MIR SINE MIR -79 183 3 2073 144 119 16 chr3 108695184 108695572 -109341586 - MSTA LTR MaLR 0 428 1 1589 145 55 31 chr3 108695679 108695801 -109341357 - LTR23 LTR ERV1 0 437 319 2307 90 7 3 chr3 108695801 108696100 -109341058 - AluY SINE Alu -10 301 2 1589 145 55 31 chr3 108696100 108696302 -109340856 - LTR23 LTR ERV1 -118 319 105 1278 216 102 71 chr3 108696307 108696746 -109340412 + LTR1B LTR ERV1 337 789 -37 603 227 21 14 chr3 108696821 108696962 -109340196 - MLT1E1 LTR MaLR -501 153 12 638 259 56 9 chr3 108698958 108699205 -109337953 - LTR16A LTR ERVL 0 457 182 262 367 38 19 chr3 108699369 108699579 -109337579 - LTR33 LTR ERVL -7 514 301 415 286 140 29 chr3 108700924 108701095 -109336063 - MIR3 SINE MIR -3 205 16 398 314 41 8 chr3 108701131 108701252 -109335906 - L2 LINE L2 -6 3266 3142 259 299 47 31 chr3 108703843 108703970 -109333188 + MIR SINE MIR 17 145 -63 1322 118 6 0 chr3 108705615 108705836 -109331322 - AluSc SINE Alu 0 322 101 845 211 277 51 chr3 108706252 108706646 -109330512 + MER31B LTR ERV1 1 483 -2 451 81 0 16 chr3 108706833 108706895 -109330263 + MER92B LTR ERV1 1 61 -575 1127 196 35 15 chr3 108706905 108707165 -109329993 - MER39 LTR ERV1 0 707 443 1260 263 61 11 chr3 108707165 108707542 -109329616 - MSTD LTR MaLR 0 396 1 1237 186 54 4 chr3 108707563 108707805 -109329353 - MSTD-int LTR MaLR -25 1710 1457 1204 203 70 73 chr3 108707873 108708243 -109328915 - MSTD LTR MaLR -24 372 4 435 276 36 73 chr3 108708246 108708438 -109328720 - MER39 LTR ERV1 -263 444 260 242 243 13 27 chr3 108708411 108708513 -109328645 - MER34 LTR ERV1 -420 122 1 * 2059 198 67 58 chr3 108708514 108709084 -109328074 + MER92B LTR ERV1 62 636 0 1718 150 10 48 chr3 108709192 108709506 -109327652 + AluJo SINE Alu 1 302 -10 536 45 0 91 chr3 108709742 108709830 -109327328 - L1PA4 LINE L1 0 6155 6076 502 291 0 0 chr3 108711538 108711648 -109325510 + FLAM_A SINE Alu 5 114 -28 1062 221 16 40 chr3 108711865 108712114 -109325044 - MLT1A1 LTR MaLR -1 364 122 2580 128 99 2 chr3 108712135 108712580 -109324578 + LTR21A LTR ERV1 1 488 -17 312 133 22 156 chr3 108712581 108712671 -109324487 - MLT1A1 LTR MaLR -287 78 1 2188 197 60 111 chr3 108713935 108714666 -109322492 - LTR8A LTR ERV1 0 727 34 811 309 83 0 chr3 108714682 108714983 -109322175 + LTR16A LTR ERVL 125 450 0 2417 190 138 22 chr3 108715108 108715730 -109321428 + LTR48 LTR ERV1 1 694 -93 842 191 12 6 chr3 108715737 108715899 -109321259 - FRAM SINE Alu -13 163 1 625 106 21 0 chr3 108715901 108715995 -109321163 + LTR48B LTR ERV1 539 634 -10 1968 154 13 0 chr3 108716682 108716988 -109320170 + AluJb SINE Alu 1 310 -2 2048 125 152 13 chr3 108717121 108717497 -109319661 - MSTA LTR MaLR 0 428 1 13401 32 0 6 chr3 108718284 108720677 -109316481 + L1PA3 LINE L1 3767 6152 -3 7435 31 0 6 chr3 108719773 108720678 -109316480 + L1PA3 LINE L1 5254 6197 0 235 136 0 0 chr3 108720678 108720722 -109316436 + (A)n Simple_repeat Simple_repeat 1 180 0 345 373 33 9 chr3 108723350 108723562 -109313596 - MIR SINE MIR -6 256 40 1915 190 9 6 chr3 108723572 108723919 -109313239 - MER7A DNA MER2_type 0 346 1 1674 169 37 49 chr3 108723925 108724108 -109313050 - MER2 DNA MER2_type 0 345 166 2460 125 35 28 chr3 108724108 108724539 -109312619 + Tigger2a DNA MER2_type 1 434 0 1674 169 37 49 chr3 108724539 108724704 -109312454 - MER2 DNA MER2_type -179 166 1 2157 130 3 0 chr3 108724809 108725109 -109312049 + AluSx SINE Alu 1 301 -11 1138 214 121 102 chr3 108725665 108726127 -109311031 - MER21B LTR ERV1 -345 518 48 469 188 12 12 chr3 108726172 108726257 -109310901 - MER21B LTR ERV1 -774 89 5 212 0 0 35 chr3 108726390 108726419 -109310739 + (TAA)n Simple_repeat Simple_repeat 1 28 0 341 351 18 23 chr3 108726457 108726628 -109310530 - MIR SINE MIR -19 243 74 24 0 0 0 chr3 108726898 108726922 -109310236 + AT_rich Low_complexity Low_complexity 1 24 0 459 294 104 57 chr3 108727052 108727351 -109309807 + L2 LINE L2 2474 2786 -528 884 224 138 43 chr3 108727352 108727569 -109309589 - MLT1C LTR MaLR -57 410 215 1557 195 0 14 chr3 108727569 108727851 -109309307 - AluJo SINE Alu -30 282 5 884 224 138 43 chr3 108727851 108728003 -109309155 - MLT1C LTR MaLR -252 215 6 2871 98 49 14 chr3 108728206 108728249 -109308909 - MLT2A1 LTR ERVL 0 444 404 454 133 0 105 chr3 108728249 108728354 -109308804 - L1PA11 LINE L1 -5 6169 6076 2871 98 49 14 chr3 108728354 108728739 -109308419 - MLT2A1 LTR ERVL -40 404 1 349 261 108 56 chr3 108728873 108729179 -109307979 - L1 LINE L1 -2742 3404 3083 839 238 71 37 chr3 108729237 108729512 -109307646 - LTR37A LTR ERV1 -4 422 127 2510 160 75 6 chr3 108729512 108729992 -109307166 - L1PA16 LINE L1 -2 6164 5652 839 238 71 37 chr3 108729992 108730124 -109307034 - LTR37A LTR ERV1 -299 127 1 366 248 84 23 chr3 108730227 108730512 -109306646 - L1 LINE L1 -3078 3068 2758 267 273 0 0 chr3 108731077 108731143 -109306015 - HAL1b LINE L1 -800 548 483 288 317 43 24 chr3 108731150 108731358 -109305800 - HAL1b LINE L1 -911 437 226 687 283 25 5 chr3 108731534 108731732 -109305426 + MIR SINE MIR 20 221 -41 272 277 30 40 chr3 108733332 108733433 -109303725 - L2 LINE L2 0 3272 3173 1371 326 153 43 chr3 108734715 108735476 -109301682 - L2 LINE L2 -24 3289 2613 1089 174 42 42 chr3 108735476 108735712 -109301446 - MER46A DNA MER2_type 0 236 1 1371 326 153 43 chr3 108735712 108736491 -109300667 - L2 LINE L2 -700 2613 1560 1149 154 62 11 chr3 108736493 108736765 -109300393 - MER33 DNA MER1_type 0 324 39 238 306 96 20 chr3 108736765 108736964 -109300194 - L2 LINE L2 -1753 1561 1348 26 0 0 0 chr3 108736986 108737012 -109300146 + AT_rich Low_complexity Low_complexity 1 26 0 1037 228 53 4 chr3 108737272 108737500 -109299658 - MER8 DNA MER2_type 0 239 1 220 301 40 87 chr3 108739353 108739526 -109297632 + L2 LINE L2 3144 3308 -5 317 345 90 7 chr3 108739531 108739676 -109297482 - MIR SINE MIR -58 204 48 285 128 0 0 chr3 108740588 108740635 -109296523 + (CA)n Simple_repeat Simple_repeat 2 48 0 350 248 16 0 chr3 108742171 108742296 -109294862 + T-rich Low_complexity Low_complexity 4 130 0 287 317 67 30 chr3 108742445 108742609 -109294549 + L2 LINE L2 2652 2821 -493 207 0 0 0 chr3 108742616 108742639 -109294519 + (TC)n Simple_repeat Simple_repeat 1 23 0 44 70 0 0 chr3 108742657 108742743 -109294415 + AT_rich Low_complexity Low_complexity 1 86 0 216 0 0 0 chr3 108742743 108742767 -109294391 + (TTTTA)n Simple_repeat Simple_repeat 4 27 0 7510 27 0 0 chr3 108742767 108743682 -109293476 - L1PA4 LINE L1 -13 6142 5230 1047 55 0 0 chr3 108743682 108743809 -109293349 - AluY SINE Alu -32 279 153 22 80 0 0 chr3 108744294 108744344 -109292814 + AT_rich Low_complexity Low_complexity 1 50 0 2097 160 17 14 chr3 108745195 108745557 -109291601 - MLT1A1 LTR MaLR 0 365 3 1738 193 41 3 chr3 108745738 108746100 -109291058 + L1PB4 LINE L1 5693 6068 -88 49 57 0 19 chr3 108746202 108746285 -109290873 + AT_rich Low_complexity Low_complexity 1 84 -20 216 0 0 0 chr3 108746285 108746309 -109290849 + (TTTTA)n Simple_repeat Simple_repeat 4 27 0 5604 35 0 7 chr3 108746309 108746986 -109290172 - L1PA4 LINE L1 -13 6142 5471 49 57 0 19 chr3 108746986 108747007 -109290151 + AT_rich Low_complexity Low_complexity 82 104 0 2460 167 27 9 chr3 108747362 108747800 -109289358 + MER31A LTR ERV1 1 446 -39 205 281 0 0 chr3 108748190 108748247 -109288911 + L2 LINE L2 2914 2970 -302 3398 78 16 0 chr3 108748600 108749046 -109288112 - MLT2A2 LTR ERVL 0 453 1 195 69 0 0 chr3 108750333 108750362 -109286796 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 2015 61 42 0 chr3 108750362 108750626 -109286532 - L1PA6 LINE L1 -12 6142 5868 409 71 0 0 chr3 108750626 108750682 -109286476 + L1P LINE L1 5242 5297 -849 227 152 0 0 chr3 108750720 108750766 -109286392 + L1MC4 LINE L1 6658 6703 -1339 25 31 0 0 chr3 108750859 108750891 -109286267 + AT_rich Low_complexity Low_complexity 1 32 0 28 48 0 0 chr3 108751079 108751121 -109286037 + AT_rich Low_complexity Low_complexity 1 42 0 1093 165 5 5 chr3 108751965 108752153 -109285005 - AluJo SINE Alu -6 306 119 397 215 103 0 chr3 108752214 108752321 -109284837 + MER5C DNA MER1_type 1 118 -206 1279 214 7 108 chr3 108752339 108752745 -109284413 + MLT1A1 LTR MaLR 1 365 0 241 197 0 42 chr3 108752876 108752947 -109284211 + MER5C DNA MER1_type 253 320 -4 320 182 0 0 chr3 108753152 108753207 -109283951 - MIR SINE MIR -21 241 187 293 275 12 0 chr3 108753211 108753291 -109283867 - LTR33A LTR ERVL -7 516 436 248 336 140 31 chr3 108753292 108753521 -109283637 - LTR50 LTR ERVL -155 640 387 492 255 69 43 chr3 108753597 108753785 -109283373 - LTR50 LTR ERVL -602 193 1 471 281 92 0 chr3 108753786 108753950 -109283208 - MIR SINE MIR -82 180 2 219 244 0 0 chr3 108754338 108754379 -109282779 - L2 LINE L2 -76 3196 3156 265 300 92 50 chr3 108756361 108756481 -109280677 + MIR SINE MIR 16 140 -68 2094 157 16 16 chr3 108757076 108757451 -109279707 - THE1C LTR MaLR 0 375 1 2217 126 22 25 chr3 108757773 108758138 -109279020 + THE1B LTR MaLR 1 364 0 1576 183 3 69 chr3 108758372 108758706 -109278452 - AluJb SINE Alu 0 312 1 925 243 93 104 chr3 108759926 108759955 -109277203 + MER34B LTR ERV1 1 29 -536 1516 234 85 56 chr3 108759955 108760579 -109276579 - LTR48B LTR ERV1 -2 642 1 925 243 93 104 chr3 108760579 108761078 -109276080 + MER34B LTR ERV1 29 555 -10 1345 296 52 2 chr3 108761178 108761810 -109275348 - MER69 DNA AcHobo -1830 696 4 1852 180 50 71 chr3 108762063 108762585 -109274573 + LTR49 LTR ERV1 12 522 -73 299 140 53 0 chr3 108762694 108762751 -109274407 + LTR8A LTR ERV1 1 60 -667 2733 212 57 30 chr3 108763197 108763830 -109273328 + MER82 DNA MER2_type 3 652 -1 23 68 0 0 chr3 108764818 108764862 -109272296 + AT_rich Low_complexity Low_complexity 1 44 0 1126 239 68 9 chr3 108764945 108765267 -109271891 - MER58B DNA MER1_type 0 341 1 2713 175 122 60 chr3 108765788 108766566 -109270592 + LTR1B LTR ERV1 1 826 0 212 318 84 9 chr3 108767209 108767316 -109269842 + L2 LINE L2 3158 3272 0 304 336 36 21 chr3 108767321 108767461 -109269697 - L3 LINE CR1 -582 995 854 1838 167 59 41 chr3 108767685 108768075 -109269083 + LTR39 LTR ERV1 1 397 -386 1420 180 26 15 chr3 108768052 108768324 -109268834 + LTR39 LTR ERV1 509 783 0 * 186 43 0 0 chr3 108768399 108768422 -109268736 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 368 255 0 0 chr3 108769272 108769366 -109267792 + MIR SINE MIR 36 129 -79 431 273 238 7 chr3 108771362 108771505 -109265653 - MIR SINE MIR -84 178 3 1188 257 68 64 chr3 108771769 108772286 -109264872 - LTR40a LTR ERVL 0 519 1 735 128 32 19 chr3 108774046 108774202 -109262956 + MER53 DNA DNA 23 180 -9 221 178 22 0 chr3 108776139 108776184 -109260974 + (TTCA)n Simple_repeat Simple_repeat 4 49 0 329 233 81 12 chr3 108776186 108776272 -109260886 - L2 LINE L2 -1 3312 3221 515 80 30 10 chr3 108777275 108777375 -109259783 + (TCTA)n Simple_repeat Simple_repeat 1 102 0 244 349 21 26 chr3 108778534 108778707 -109258451 - MIR3 SINE MIR -15 193 20 264 200 0 0 chr3 108779173 108779223 -109257935 - Alu SINE Alu -6 295 246 39 0 0 0 chr3 108879262 108879301 -109157857 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr3 108880119 108880141 -109157017 + AT_rich Low_complexity Low_complexity 1 22 0 208 338 39 42 chr3 108880520 108880711 -109156447 - MIR SINE MIR -31 231 43 1990 125 7 0 chr3 108880874 108881181 -109155977 + AluSg SINE Alu 1 309 0 2195 110 3 0 chr3 108882302 108882602 -109154556 + AluSc SINE Alu 1 301 -8 1646 157 74 84 chr3 108882717 108883111 -109154047 + MLT1B LTR MaLR 1 390 0 538 233 35 0 chr3 108883661 108883777 -109153381 + MER69 DNA AcHobo 1 120 -1106 11924 118 18 48 chr3 108883896 108886395 -109150763 - L1P3 LINE L1 -3935 2526 2 1734 161 34 0 chr3 108886396 108886688 -109150470 - Tigger1 DNA MER2_type -1988 430 129 406 162 3 26 chr3 108886682 108886770 -109150388 + MLT1D LTR MaLR 440 505 0 * 30 27 0 0 chr3 108887055 108887092 -109150066 + AT_rich Low_complexity Low_complexity 1 37 0 408 337 76 12 chr3 108887157 108887329 -109149829 + L3 LINE CR1 1382 1564 -13 23 33 0 0 chr3 108887512 108887542 -109149616 + AT_rich Low_complexity Low_complexity 1 30 0 278 260 20 10 chr3 108887812 108887912 -109149246 + MLT1A1 LTR MaLR 1 101 -264 21 36 0 0 chr3 108888308 108888336 -109148822 + AT_rich Low_complexity Low_complexity 1 28 0 210 419 23 0 chr3 108888607 108888693 -109148465 - L2 LINE L2 -22 3250 3163 736 307 13 9 chr3 108888769 108889000 -109148158 - MIR SINE MIR -2 260 29 218 0 45 45 chr3 108889005 108889049 -109148109 + (TTG)n Simple_repeat Simple_repeat 2 45 0 4507 99 22 4 chr3 108889049 108889733 -109147425 - L1PB1 LINE L1 -10 6345 5650 289 149 0 0 chr3 108889735 108889782 -109147376 - MLT2A2 LTR ERVL -8 512 466 231 175 0 0 chr3 108889803 108889860 -109147298 + (TA)n Simple_repeat Simple_repeat 2 58 0 2863 77 22 17 chr3 108889860 108890265 -109146893 - MLT2A2 LTR ERVL -40 413 7 3098 182 5 35 chr3 108890272 108891075 -109146083 - L1PB1 LINE L1 -701 5654 4874 1662 235 69 18 chr3 108891690 108892183 -109144975 + LTR40a LTR ERVL 2 519 0 249 108 0 0 chr3 108893302 108893339 -109143819 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2043 99 37 0 chr3 108893341 108893614 -109143544 - AluSg SINE Alu -27 283 1 32 57 0 0 chr3 108894282 108894335 -109142823 + AT_rich Low_complexity Low_complexity 1 53 0 2029 100 3 21 chr3 108894488 108894828 -109142330 - AluSx SINE Alu 0 335 1 22 0 0 0 chr3 108894957 108894979 -109142179 + AT_rich Low_complexity Low_complexity 1 22 0 225 32 32 0 chr3 108895020 108895051 -109142107 - U2 snRNA snRNA -153 35 4 4572 223 36 14 chr3 108895239 108896705 -109140453 - L1PB1 LINE L1 -2596 3754 2255 1287 179 12 28 chr3 108896725 108896977 -109140181 - AluSx SINE Alu -19 293 46 2276 281 62 18 chr3 108896978 108898319 -109138839 - L1PB1 LINE L1 -4106 2245 853 1316 170 155 15 chr3 108899880 108900145 -109137013 - AluJo SINE Alu 0 302 1 1702 206 8 0 chr3 108900355 108900715 -109136443 - L1MA9 LINE L1 0 6312 5950 335 70 0 0 chr3 108901343 108901386 -109135772 + MER61-int LTR ERV1 1320 1362 -3855 16825 115 45 18 chr3 108901402 108904259 -109132899 + MER61-int LTR ERV1 1655 4393 -824 663 223 13 6 chr3 108904544 108904701 -109132457 - FRAM SINE Alu -18 158 1 213 316 51 13 chr3 108904705 108904784 -109132374 - L3 LINE CR1 -177 1400 1319 * 246 320 10 41 chr3 108904768 108904865 -109132293 + L2 LINE L2 3220 3313 0 352 359 92 20 chr3 108904865 108905255 -109131903 - L3 LINE CR1 -253 1324 907 1035 241 9 5 chr3 108905255 108905467 -109131691 + MER58A DNA MER1_type 1 213 -11 1527 257 92 35 chr3 108905836 108906444 -109130714 - L1MD2 LINE L1 -16 6343 5701 5377 229 65 32 chr3 108906592 108907939 -109129219 + MLT1A1-int LTR MaLR 314 1704 -31 1131 249 33 58 chr3 108907960 108908325 -109128833 + MLT1A1 LTR MaLR 7 362 -3 812 212 51 30 chr3 108908340 108908576 -109128582 + MLT1D LTR MaLR 116 356 -149 2215 120 3 0 chr3 108909542 108909843 -109127315 + AluSx SINE Alu 1 302 -10 250 266 13 0 chr3 108912258 108912337 -109124821 + (TAAA)n Simple_repeat Simple_repeat 2 81 0 27 0 0 0 chr3 108913439 108913466 -109123692 + AT_rich Low_complexity Low_complexity 1 27 0 913 173 0 0 chr3 108913482 108913621 -109123537 - FRAM SINE Alu -38 138 1 519 268 181 26 chr3 108913697 108913962 -109123196 + MLT1G1 LTR MaLR 42 347 -248 421 247 82 0 chr3 108914892 108914989 -109122169 + MER58A DNA MER1_type 2 106 -1 282 191 67 56 chr3 108915486 108915575 -109121583 + MER5B DNA MER1_type 83 172 -6 183 167 42 42 chr3 108915825 108915873 -109121285 - L2 LINE L2 -11 3302 3255 303 243 54 0 chr3 108916544 108916618 -109120540 - L1MC4 LINE L1 -1339 6703 6626 457 340 53 22 chr3 108916876 108917390 -109119768 + MERVL LTR ERVL 4734 5326 -438 210 37 0 0 chr3 108917407 108917434 -109119724 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 840 322 53 17 chr3 108917525 108917885 -109119273 - LTR16B LTR ERVL -91 373 1 198 333 39 46 chr3 108918096 108918242 -109118916 + L2 LINE L2 2614 2760 -554 1471 228 68 97 chr3 108918242 108918812 -109118346 + MLT2B3 LTR ERVL 1 554 0 484 289 159 25 chr3 108919330 108919531 -109117627 - MIR SINE MIR -3 259 32 231 188 0 0 chr3 108919671 108919719 -109117439 + (TA)n Simple_repeat Simple_repeat 2 49 0 695 180 84 154 chr3 108920316 108920627 -109116531 - MLT1A1 LTR MaLR -8 357 78 290 309 211 30 chr3 108920659 108920995 -109116163 + L2 LINE L2 2375 2771 -543 353 345 43 0 chr3 108924721 108924860 -109112298 - L2 LINE L2 0 3313 3169 368 325 69 58 chr3 108925010 108925284 -109111874 - L2 LINE L2 -366 2948 2672 1948 191 10 2 chr3 108925854 108926257 -109110901 + L1P LINE L1 4992 5397 -749 186 328 90 0 chr3 108926920 108926987 -109110171 - L2 LINE L2 -2 3311 3239 1104 195 16 127 chr3 108927341 108927707 -109109451 + MLT1D LTR MaLR 113 437 -68 8217 161 17 4 chr3 108927707 108929120 -109108038 - Tigger1 DNA MER2_type -1 2417 987 32 0 0 0 chr3 108929682 108929714 -109107444 + AT_rich Low_complexity Low_complexity 1 32 0 3168 122 18 30 chr3 108931842 108932336 -109104822 + LOR1a LTR ERV1 10 497 0 2190 133 8 22 chr3 108932970 108933337 -109103821 + THE1B LTR MaLR 1 362 -2 3549 119 3 69 chr3 108933339 108933963 -109103195 + THE1B-int LTR MaLR 1 583 -997 3375 103 14 28 chr3 108933987 108934484 -109102674 + THE1B-int LTR MaLR 1091 1580 0 360 85 17 34 chr3 108934484 108934543 -109102615 + THE1B LTR MaLR 1 58 -306 294 325 50 0 chr3 108935528 108935648 -109101510 - MIR SINE MIR -74 188 63 888 214 154 19 chr3 108936085 108936351 -109100807 - AluJb SINE Alu 0 302 1 25 75 0 0 chr3 108936586 108936639 -109100519 + AT_rich Low_complexity Low_complexity 1 53 0 2426 80 0 0 chr3 108938463 108938762 -109098396 - AluSc SINE Alu -8 301 3 6761 68 5 0 chr3 108939982 108941120 -109096038 + L1PA6 LINE L1 5002 6151 -3 451 170 71 78 chr3 108941526 108941667 -109095491 - AluJo SINE Alu -172 140 1 847 223 10 21 chr3 108941964 108942157 -109095001 + AluJb SINE Alu 106 296 -16 419 232 33 46 chr3 108944550 108944701 -109092457 + FRAM SINE Alu 25 173 -3 484 182 20 10 chr3 108945636 108945735 -109091423 - L1MC1 LINE L1 -5 6328 6229 451 325 92 55 chr3 108947885 108948233 -109088925 - L2 LINE L2 -8 3264 2904 22 0 0 0 chr3 108948871 108948893 -109088265 + AT_rich Low_complexity Low_complexity 1 22 0 5927 194 16 7 chr3 108950385 108951619 -109085539 + L1 LINE L1 3440 4684 -1462 194 406 8 8 chr3 108952323 108952446 -109084712 - MIR3 SINE MIR -8 200 78 2106 286 15 50 chr3 108953586 108954270 -109082888 + MLT-int LTR MaLR 809 1468 -267 399 89 0 0 chr3 108954358 108954414 -109082744 + (CA)n Simple_repeat Simple_repeat 1 56 0 2295 205 119 4 chr3 108954428 108954916 -109082242 + MER44D DNA MER2_type 6 604 -1 216 0 0 0 chr3 108956429 108956453 -109080705 + (CA)n Simple_repeat Simple_repeat 2 25 0 1306 143 45 25 chr3 108956793 108957038 -109080120 - MSTB1 LTR MaLR -4 428 179 2005 123 0 3 chr3 108957996 108958281 -109078877 + AluSg SINE Alu 1 284 -26 264 81 0 0 chr3 108958728 108958765 -109078393 + tRNA-Glu-GAG tRNA tRNA 1 37 -38 244 272 80 0 chr3 108959579 108959704 -109077454 - THE1-int LTR MaLR -170 1410 1276 * 438 203 20 95 chr3 108959686 108959834 -109077324 + MST-int LTR MaLR 1195 1331 -320 3358 179 9 62 chr3 108959872 108960613 -109076545 - THE1-int LTR MaLR -388 1192 491 1228 174 181 20 chr3 108960636 108960934 -109076224 - MSTA LTR MaLR -82 346 1 333 311 34 8 chr3 108960987 108961106 -109076052 + MIR SINE MIR 1 122 -140 1083 176 36 60 chr3 108961469 108961568 -109075590 + AluSx SINE Alu 40 140 -172 265 24 48 0 chr3 108961568 108961610 -109075548 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1083 176 36 60 chr3 108961610 108961760 -109075398 + AluSx SINE Alu 140 283 -29 207 0 0 0 chr3 108961763 108961786 -109075372 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 223 283 53 11 chr3 108963333 108963435 -109073723 - MIR SINE MIR -109 153 45 212 305 53 32 chr3 108963647 108963742 -109073416 + MER5A DNA MER1_type 74 170 -19 211 297 51 76 chr3 108965458 108965576 -109071582 - L2 LINE L2 -6 3266 3152 211 178 14 41 chr3 108965846 108965919 -109071239 + (TA)n Simple_repeat Simple_repeat 2 72 0 1118 213 22 22 chr3 108966782 108967097 -109070061 - MER33 DNA MER1_type -4 320 6 373 324 118 6 chr3 108970312 108970482 -109066676 - MIR SINE MIR -63 199 11 2028 122 26 3 chr3 108970603 108970906 -109066252 + AluSg SINE Alu 1 310 0 1396 152 16 19 chr3 108971725 108972079 -109065079 + LTR45B LTR ERV1 96 489 0 745 276 35 0 chr3 108972100 108972332 -109064826 + L1ME2 LINE L1 5052 5291 -855 235 300 62 0 chr3 108972394 108972474 -109064684 + L1ME2 LINE L1 5394 5478 -700 481 270 59 80 chr3 108972493 108972782 -109064376 + L1ME2 LINE L1 5867 6149 -15 21 0 0 0 chr3 108977859 108977880 -109059278 + AT_rich Low_complexity Low_complexity 1 21 0 2357 177 7 27 chr3 108978273 108978720 -109058438 - MER49 LTR ERV1 -309 614 177 208 245 102 48 chr3 108978720 108978867 -109058291 + L2 LINE L2 2198 2352 -962 21 0 0 0 chr3 108979756 108979777 -109057381 + AT_rich Low_complexity Low_complexity 1 21 0 5161 209 25 10 chr3 108980748 108982406 -109054752 + L1M1 LINE L1 4128 5805 -498 347 219 42 21 chr3 108982418 108982514 -109054644 + AluS SINE Alu 5 102 -201 1918 186 16 19 chr3 108982619 108983048 -109054110 + L1 LINE L1 4943 5370 -776 1760 166 3 23 chr3 108983050 108983357 -109053801 + AluJb SINE Alu 5 305 -7 3101 214 26 3 chr3 108983360 108984043 -109053115 + L1P LINE L1 4643 5341 -805 180 333 0 0 chr3 108984340 108984385 -109052773 - L2 LINE L2 -305 2967 2923 23 0 0 0 chr3 108986674 108986697 -109050461 + AT_rich Low_complexity Low_complexity 1 23 0 1440 193 56 7 chr3 108986756 108987052 -109050106 + AluJo SINE Alu 1 309 0 502 340 116 16 chr3 108987136 108987507 -109049651 + L1MC/D LINE L1 5412 5819 -1989 443 179 36 0 chr3 108987740 108987824 -109049334 - MLT1A2 LTR MaLR -287 87 1 180 0 0 0 chr3 108988144 108988164 -109048994 + (GAAA)n Simple_repeat Simple_repeat 2 21 0 26 50 0 0 chr3 108988397 108988437 -109048721 + AT_rich Low_complexity Low_complexity 1 40 0 451 268 82 9 chr3 108988583 108988803 -109048355 + L1ME4a LINE L1 5704 5939 -182 700 253 53 41 chr3 108988835 108989080 -109048078 - L2 LINE L2 -4 3309 3062 1025 103 19 0 chr3 108990964 108991119 -109046039 - L1P4 LINE L1 -348 5813 5656 1315 114 19 57 chr3 108991119 108991375 -109045783 + L1PA13 LINE L1 5911 6162 -1 406 322 34 7 chr3 108994239 108994385 -109042773 + MIR SINE MIR 112 261 -1 6184 123 9 3 chr3 108994522 108995475 -109041683 + L1MA3 LINE L1 5305 6263 -42 1140 157 32 48 chr3 108995592 108995840 -109041318 + THE1A LTR MaLR 112 355 0 3705 175 27 5 chr3 108995840 108996588 -109040570 - L1 LINE L1 -1698 4448 3685 8521 93 7 3 chr3 108996704 108997947 -109039211 - L1P LINE L1 -1987 4159 2912 464 235 157 69 chr3 108998125 108998342 -109038816 + MIR SINE MIR 21 256 -6 347 310 50 0 chr3 108998404 108998504 -109038654 + MER3 DNA MER1_type 1 105 -104 435 203 0 0 chr3 108999382 108999456 -109037702 - AluJ/FLAM SINE Alu -238 74 1 22 0 0 0 chr3 109001197 109001219 -109035939 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 109001522 109001550 -109035608 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 109001802 109001824 -109035334 + AT_rich Low_complexity Low_complexity 1 22 0 464 323 69 67 chr3 109002996 109003457 -109033701 - MLT1K LTR MaLR -2 586 125 21 0 0 0 chr3 109004131 109004152 -109033006 + AT_rich Low_complexity Low_complexity 1 21 0 721 74 0 0 chr3 109006335 109006430 -109030728 + AluY SINE Alu 213 307 -4 1454 118 26 123 chr3 109006509 109007007 -109030151 - LTR24B LTR ERV1 -8 568 119 22 0 0 0 chr3 109007908 109007930 -109029228 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr3 109008536 109008577 -109028581 + AT_rich Low_complexity Low_complexity 1 41 0 2592 156 74 36 chr3 109008688 109009214 -109027944 - MER34C LTR ERV1 -3 582 37 488 228 65 20 chr3 109010571 109010822 -109026336 + MLT1A1 LTR MaLR 1 351 -14 306 206 15 15 chr3 109010833 109010901 -109026257 + MLT1A1-int LTR MaLR 3 70 -1581 251 209 0 0 chr3 109011724 109011767 -109025391 + 5S rRNA rRNA 1 43 -78 223 371 150 20 chr3 109011777 109012030 -109025128 + L2 LINE L2 2592 2877 -437 2237 279 61 26 chr3 109012771 109013671 -109023487 - L2 LINE L2 -82 3231 2210 3701 224 35 8 chr3 109013833 109014743 -109022415 - L1P LINE L1 -1237 4909 3975 624 185 17 0 chr3 109014740 109014859 -109022299 + L1P4 LINE L1 5401 5521 -640 * 379 341 64 19 chr3 109015160 109015474 -109021684 + L1M4 LINE L1 4509 4836 -1310 1010 303 50 35 chr3 109015498 109015894 -109021264 - L2 LINE L2 0 3313 2912 415 200 32 11 chr3 109017232 109017327 -109019831 + MER74A LTR ERVL 21 117 -441 1490 168 6 63 chr3 109017954 109018269 -109018889 - AluJo SINE Alu -5 307 11 396 294 151 32 chr3 109018389 109018607 -109018551 - MIR SINE MIR -17 245 2 252 0 0 0 chr3 109019621 109019649 -109017509 + (TG)n Simple_repeat Simple_repeat 2 29 0 201 187 13 40 chr3 109019685 109019760 -109017398 + T-rich Low_complexity Low_complexity 6 78 0 365 242 18 76 chr3 109019834 109020139 -109017019 + CT-rich Low_complexity Low_complexity 1 287 0 236 323 11 43 chr3 109020286 109020472 -109016686 + CT-rich Low_complexity Low_complexity 1 180 0 224 313 15 0 chr3 109020528 109020595 -109016563 + CT-rich Low_complexity Low_complexity 4 71 0 217 227 0 0 chr3 109022585 109022629 -109014529 + L2 LINE L2 3269 3312 -1 1456 224 19 32 chr3 109022893 109023272 -109013886 - MLT1A2 LTR MaLR 0 374 1 38 22 0 0 chr3 109023549 109023594 -109013564 + AT_rich Low_complexity Low_complexity 1 45 0 3720 182 7 5 chr3 109023746 109024936 -109012222 - L1 LINE L1 -3372 4193 3001 217 196 20 0 chr3 109025335 109025386 -109011772 + MIR SINE MIR 211 262 0 330 355 36 12 chr3 109025408 109025574 -109011584 + MER5B DNA MER1_type 7 176 -2 346 345 36 0 chr3 109025424 109025563 -109011595 - MER5A DNA MER1_type -22 167 24 314 250 11 65 chr3 109025760 109025852 -109011306 - MIR SINE MIR -102 106 20 189 0 0 0 chr3 109026739 109026760 -109010398 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 326 305 102 50 chr3 109027404 109027605 -109009553 - MIR SINE MIR -17 245 35 2110 128 0 16 chr3 109028306 109028610 -109008548 + AluSg SINE Alu 2 300 -10 1202 160 13 0 chr3 109029009 109029234 -109007924 + L1MA4A LINE L1 6072 6299 -4 821 287 79 23 chr3 109029247 109030161 -109006997 + L1M1 LINE L1 2841 3811 -3754 221 0 0 33 chr3 109030206 109030236 -109006922 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 300 285 12 24 chr3 109031571 109031721 -109005437 + L1ME3 LINE L1 6018 6162 0 203 222 74 28 chr3 109031944 109032019 -109005139 + MIR SINE MIR 20 98 -164 200 341 130 0 chr3 109033458 109033581 -109003577 - MIR SINE MIR -89 173 35 427 179 0 13 chr3 109034264 109034342 -109002816 + MER39 LTR ERV1 631 707 0 627 336 11 19 chr3 109034439 109034701 -109002457 - MIR SINE MIR 0 262 3 1891 112 52 3 chr3 109035627 109035932 -109001226 + MER61A-int LTR ERV1 4882 5201 -16 188 35 35 0 chr3 109035932 109035961 -109001197 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2022 96 22 0 chr3 109035967 109036237 -109000921 - AluSx SINE Alu -36 276 1 1410 143 130 26 chr3 109036262 109036570 -109000588 + MER61A LTR ERV1 1 340 -3 2592 10 0 3 chr3 109036898 109037187 -108999971 + AluYb8 SINE Alu 1 288 -30 223 256 49 73 chr3 109037222 109037304 -108999854 + MIR SINE MIR 35 114 -94 2196 130 31 0 chr3 109037428 109037781 -108999377 + THE1B LTR MaLR 1 364 0 267 346 50 0 chr3 109038580 109038681 -108998477 - MIR3 SINE MIR -43 165 60 2182 122 3 10 chr3 109038737 109039049 -108998109 + AluSp SINE Alu 1 310 -3 255 314 17 81 chr3 109039068 109039240 -108997918 + MIR SINE MIR 47 207 -55 188 415 0 0 chr3 109039774 109039815 -108997343 + T-rich Low_complexity Low_complexity 1 41 0 1707 201 40 88 chr3 109040153 109040319 -108996839 + L1M1 LINE L1 16 188 -7377 2302 115 0 10 chr3 109040319 109040632 -108996526 - AluSg SINE Alu 0 310 1 1707 201 40 88 chr3 109040632 109041012 -108996146 + L1M1 LINE L1 188 536 -7029 24 53 0 0 chr3 109042149 109042187 -108994971 + AT_rich Low_complexity Low_complexity 1 38 0 404 346 156 4 chr3 109042589 109042846 -108994312 - L2 LINE L2 -489 2825 2530 678 240 99 99 chr3 109042856 109043218 -108993940 - MER57B LTR ERV1 -6 428 67 198 0 0 0 chr3 109044790 109044812 -108992346 + (A)n Simple_repeat Simple_repeat 1 22 0 26 0 0 0 chr3 109045001 109045027 -108992131 + AT_rich Low_complexity Low_complexity 1 26 0 243 246 18 0 chr3 109045061 109045118 -108992040 + CT-rich Low_complexity Low_complexity 2 59 0 1000 217 68 16 chr3 109045678 109045927 -108991231 - MLT1A1 LTR MaLR -1 364 103 1821 124 31 28 chr3 109046155 109046446 -108990712 + AluSx SINE Alu 1 292 -20 293 231 84 113 chr3 109046504 109046707 -108990451 - L1ME1 LINE L1 -4 6162 5966 25 31 0 0 chr3 109148008 109148040 -108889118 + AT_rich Low_complexity Low_complexity 1 32 0 474 321 13 28 chr3 109148317 109148519 -108888639 + MIR SINE MIR 1 201 -61 421 262 72 97 chr3 109149267 109149557 -108887601 - L2 LINE L2 -1 3312 3030 443 287 157 70 chr3 109149571 109149700 -108887458 + MLT1H LTR MaLR 39 155 -394 1740 57 0 9 chr3 109149700 109149931 -108887227 + AluY SINE Alu 82 311 0 443 287 157 70 chr3 109149931 109150271 -108886887 + MLT1H LTR MaLR 155 549 0 252 248 113 30 chr3 109150361 109150494 -108886664 - L2 LINE L2 -419 2895 2752 5898 145 27 24 chr3 109151230 109152423 -108884735 - L1MA4A LINE L1 -2 6301 5099 389 315 45 0 chr3 109152463 109152574 -108884584 - L2 LINE L2 -3 3269 3154 283 352 0 8 chr3 109152647 109152772 -108884386 - MLT1L LTR MaLR -14 601 478 670 298 19 14 chr3 109153670 109153878 -108883280 + MIR SINE MIR 20 228 -34 1813 240 33 13 chr3 109154702 109155156 -108882002 + MLT1C LTR MaLR 5 467 0 280 250 0 0 chr3 109156330 109156382 -108880776 + tRNA-Thr-ACA tRNA tRNA 17 68 -8 183 356 78 0 chr3 109156606 109156696 -108880462 + MIR SINE MIR 49 145 -117 2684 103 0 0 chr3 109156961 109157311 -108879847 + THE1A LTR MaLR 1 350 -5 11960 106 18 0 chr3 109157313 109158865 -108878293 + THE1A-int LTR MaLR 1 1580 0 2916 90 0 0 chr3 109158865 109159220 -108877938 + THE1A LTR MaLR 1 355 0 553 218 122 13 chr3 109159334 109159490 -108877668 + MIR SINE MIR 64 236 -26 522 250 101 37 chr3 109159535 109159910 -108877248 - L1MC/D LINE L1 -665 5635 5343 212 317 29 0 chr3 109160518 109160563 -108876595 + MIR SINE MIR 156 198 -64 306 0 0 0 chr3 109160563 109160597 -108876561 + (TA)n Simple_repeat Simple_repeat 1 34 0 212 317 29 0 chr3 109160597 109160655 -108876503 + MIR SINE MIR 198 262 0 35 41 0 0 chr3 109162206 109162255 -108874903 + AT_rich Low_complexity Low_complexity 1 49 0 1659 223 22 19 chr3 109162470 109162838 -108874320 + MLT1A2 LTR MaLR 4 372 -2 1650 199 0 17 chr3 109163069 109163366 -108873792 + AluJb SINE Alu 20 311 -1 190 102 0 61 chr3 109163369 109163418 -108873740 + (GAAA)n Simple_repeat Simple_repeat 2 47 0 1582 166 6 72 chr3 109163426 109163745 -108873413 + AluJo SINE Alu 1 298 -14 241 191 0 0 chr3 109163763 109163810 -108873348 - L1ME4a LINE L1 -121 6000 5954 236 204 23 0 chr3 109163894 109163938 -108873220 + MER69A DNA AcHobo 8 52 -125 339 206 18 182 chr3 109163981 109164151 -108873007 + MER69A DNA AcHobo 35 176 -1 2290 167 36 27 chr3 109164198 109164640 -108872518 - MSTB2 LTR MaLR -7 450 5 888 255 101 46 chr3 109164907 109165233 -108871925 - MER2 DNA MER2_type 0 344 1 712 237 0 19 chr3 109165314 109165469 -108871689 + MER3 DNA MER1_type 2 153 -56 4219 112 5 16 chr3 109165469 109165895 -108871263 + MER41B LTR ERV1 1 419 -216 6490 59 14 13 chr3 109165895 109166673 -108870485 - LTR17 LTR ERV1 -1 779 1 4219 112 5 16 chr3 109166673 109166887 -108870271 + MER41B LTR ERV1 419 634 -1 359 83 0 167 chr3 109166888 109166960 -108870198 + MER3 DNA MER1_type 150 209 0 320 146 0 0 chr3 109166920 109166968 -108870190 - MER3 DNA MER1_type -122 87 40 * 4124 137 25 48 chr3 109167821 109168528 -108868630 + LTR8 LTR ERV1 1 691 0 606 230 82 75 chr3 109169153 109169504 -108867654 + LTR18B LTR ERVL 1 614 0 711 225 25 0 chr3 109169511 109169671 -108867487 + HERVL18 LTR ERVL 2 165 -5882 7749 211 8 8 chr3 109169772 109171195 -108865963 + HERVL18 LTR ERVL 186 1608 -4439 321 190 0 17 chr3 109171185 109171243 -108865915 + HERVL18 LTR ERVL 1325 1381 -4666 * 5714 148 6 1 chr3 109171280 109172124 -108865034 + HERVL18 LTR ERVL 1605 2452 -3595 * 21027 155 22 6 chr3 109172121 109175394 -108861764 + HERVL18 LTR ERVL 2718 6042 -5 655 215 146 84 chr3 109175399 109175734 -108861424 + LTR18A LTR ERVL 1 356 -1 216 0 0 0 chr3 109176096 109176120 -108861038 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1821 124 33 18 chr3 109176127 109176402 -108860756 - AluSx SINE Alu -33 279 1 404 187 8 0 chr3 109176404 109176527 -108860631 + CT-rich Low_complexity Low_complexity 2 125 0 2260 94 0 10 chr3 109176771 109177121 -108860037 + AluY SINE Alu 1 311 0 21 0 0 0 chr3 109177436 109177457 -108859701 + AT_rich Low_complexity Low_complexity 1 21 0 2215 177 62 82 chr3 109177563 109178078 -108859080 - MLT1D LTR MaLR 0 505 1 221 265 161 100 chr3 109178822 109179052 -108858106 + MIR SINE MIR 19 262 0 1283 235 46 4 chr3 109180372 109180653 -108856505 + AluJo SINE Alu 3 295 -17 682 109 17 8 chr3 109180657 109180776 -108856382 + (GAAA)n Simple_repeat Simple_repeat 1 120 0 1542 100 9 0 chr3 109181436 109181646 -108855512 - AluSg/x SINE Alu -16 294 83 242 308 0 0 chr3 109181760 109181825 -108855333 + L2 LINE L2 2214 2278 -1036 510 233 8 114 chr3 109182373 109182609 -108854549 + MER58C DNA MER1_type 1 211 -4 341 286 90 8 chr3 109185152 109185285 -108851873 - L3b LINE CR1 -121 1462 1319 21 0 0 0 chr3 109186417 109186438 -108850720 + AT_rich Low_complexity Low_complexity 1 21 0 1470 132 9 0 chr3 109188155 109188375 -108848783 - AluJb SINE Alu -6 306 85 792 180 16 10 chr3 109188380 109188574 -108848584 + Tigger6 DNA MER2_type 1327 1521 -76 643 123 0 38 chr3 109188609 109188715 -108848443 - U6 snRNA snRNA -4 103 2 2082 192 26 31 chr3 109188947 109189405 -108847753 - L1MA10 LINE L1 -25 6309 5854 190 264 19 0 chr3 109191750 109191803 -108845355 - MIR SINE MIR 0 262 209 370 69 121 0 chr3 109191806 109191864 -108845294 + MLT1A1 LTR MaLR 1 65 -300 * 3047 185 49 24 chr3 109191863 109192618 -108844540 - LTR1B LTR ERV1 -19 806 1 604 180 14 79 chr3 109192618 109192757 -108844401 + MLT1A1 LTR MaLR 64 193 -172 2790 245 64 28 chr3 109192806 109193667 -108843491 + MLT1A2-int LTR MaLR 755 1735 0 1177 179 47 124 chr3 109193673 109194059 -108843099 + MLT1A2 LTR MaLR 15 370 -4 362 248 56 88 chr3 109194085 109194210 -108842948 - MIR SINE MIR -105 157 37 213 186 47 0 chr3 109194256 109194299 -108842859 + (CATCT)n Simple_repeat Simple_repeat 1 45 0 2223 103 3 0 chr3 109194457 109194749 -108842409 + AluSx SINE Alu 5 297 -15 21 71 0 0 chr3 109195743 109195785 -108841373 + AT_rich Low_complexity Low_complexity 1 42 0 446 264 9 9 chr3 109195789 109195899 -108841259 - L2 LINE L2 -5 3308 3199 185 282 82 35 chr3 109196258 109196343 -108840815 + L2 LINE L2 2973 3061 -211 257 333 26 0 chr3 109196397 109196475 -108840683 + L2 LINE L2 3191 3270 -2 22 25 0 25 chr3 109198752 109198768 -108838390 + AT_rich Low_complexity Low_complexity 1 16 -23 1636 206 0 0 chr3 109198768 109199055 -108838103 + AluJb SINE Alu 1 287 -25 22 25 0 25 chr3 109199055 109199078 -108838080 + AT_rich Low_complexity Low_complexity 16 39 0 12703 128 24 104 chr3 109199828 109201434 -108835724 - Tigger1 DNA MER2_type 0 2418 686 240 35 0 0 chr3 109201434 109201463 -108835695 + (TTA)n Simple_repeat Simple_repeat 2 30 0 12703 128 24 104 chr3 109201463 109202052 -108835106 - Tigger1 DNA MER2_type -1732 686 464 5883 107 43 0 chr3 109202052 109203150 -108834008 - L1PA11 LINE L1 -2 6172 5055 12703 128 24 104 chr3 109203150 109203579 -108833579 - Tigger1 DNA MER2_type -1954 464 2 377 115 0 0 chr3 109203786 109203847 -108833311 + L1PA15 LINE L1 6098 6158 -7 25 75 0 0 chr3 109203893 109203946 -108833212 + AT_rich Low_complexity Low_complexity 1 53 0 22 35 0 0 chr3 109204323 109204352 -108832806 + AT_rich Low_complexity Low_complexity 1 29 0 544 186 42 8 chr3 109204541 109204659 -108832499 + L1M4 LINE L1 6 127 -6415 271 312 79 50 chr3 109205053 109205255 -108831903 + MIR SINE MIR 28 235 -27 1368 226 37 34 chr3 109207079 109207429 -108829729 + MLT2D LTR ERVL 64 414 0 6326 54 3 10 chr3 109209273 109210296 -108826862 - L1PA5 LINE L1 -7 6147 5106 5176 129 24 0 chr3 109210296 109211092 -108826066 + L1PA15 LINE L1 5351 6165 0 21 36 0 0 chr3 109211737 109211765 -108825393 + AT_rich Low_complexity Low_complexity 1 28 0 2115 120 0 7 chr3 109213847 109214146 -108823012 + AluSx SINE Alu 1 297 -15 25 31 0 0 chr3 109214265 109214297 -108822861 + AT_rich Low_complexity Low_complexity 1 32 0 312 261 35 0 chr3 109215033 109215148 -108822010 - L1ME3A LINE L1 -298 5872 5754 229 204 0 0 chr3 109215226 109215270 -108821888 + MLT1G1 LTR MaLR 540 583 -12 190 81 54 0 chr3 109219335 109219372 -108817786 + (TA)n Simple_repeat Simple_repeat 1 39 0 192 370 30 10 chr3 109220233 109220333 -108816825 + L2 LINE L2 3170 3271 -1 251 245 19 0 chr3 109220381 109220434 -108816724 + Tigger5 DNA MER2_type 1 54 -2269 290 226 0 0 chr3 109220470 109220523 -108816635 + Tigger5 DNA MER2_type 2270 2322 -1 252 0 0 0 chr3 109222005 109222033 -108815125 + (T)n Simple_repeat Simple_repeat 1 28 0 2069 131 0 6 chr3 109222182 109222496 -108814662 - AluSx SINE Alu 0 312 1 263 302 0 5 chr3 109222497 109222562 -108814596 + MIR SINE MIR 46 107 -102 876 166 147 38 chr3 109222564 109222775 -108814383 + MLT1D LTR MaLR 3 236 -269 203 243 0 0 chr3 109222775 109222812 -108814346 + G-rich Low_complexity Low_complexity 4 40 0 1053 267 32 9 chr3 109222812 109223127 -108814031 + MLT1D LTR MaLR 184 505 0 202 209 0 0 chr3 109223248 109223291 -108813867 + (ATG)n Simple_repeat Simple_repeat 3 45 0 27 0 0 0 chr3 109224949 109224976 -108812182 + AT_rich Low_complexity Low_complexity 1 27 0 344 234 66 51 chr3 109225210 109225347 -108811811 - L1ME3A LINE L1 -208 5962 5824 1902 225 81 35 chr3 109225496 109226112 -108811046 - MLT1E2 LTR MaLR 0 626 5 782 231 30 89 chr3 109226541 109226661 -108810497 - MIR SINE MIR -5 257 131 1968 141 10 0 chr3 109226661 109226967 -108810191 + AluSx SINE Alu 1 309 -3 782 231 30 89 chr3 109226967 109227115 -108810043 - MIR SINE MIR -131 131 5 732 196 58 93 chr3 109227190 109227415 -108809743 + MER20 DNA MER1_type 3 219 0 196 355 19 47 chr3 109227594 109227701 -108809457 + L2 LINE L2 2978 3081 -191 196 203 62 78 chr3 109227840 109227904 -108809254 + L2 LINE L2 3210 3272 0 1610 188 60 44 chr3 109227912 109228041 -108809117 - MLT1B LTR MaLR -1 389 264 1915 149 128 10 chr3 109228041 109228424 -108808734 - MSTA LTR MaLR 0 428 1 1610 188 60 44 chr3 109228424 109228677 -108808481 - MLT1B LTR MaLR -126 264 1 454 273 95 25 chr3 109228833 109229075 -108808083 + MER113 DNA MER1_type? 186 444 -77 1565 202 39 15 chr3 109229441 109229773 -108807385 - MER2 DNA MER2_type 0 345 6 953 204 11 6 chr3 109229795 109229976 -108807182 - MER5A DNA MER1_type -7 182 1 219 360 36 0 chr3 109230158 109230269 -108806889 - L2 LINE L2 0 3313 3199 221 309 117 11 chr3 109230316 109230410 -108806748 + MIR SINE MIR 27 130 -78 511 338 46 14 chr3 109230995 109231214 -108805944 + MIR SINE MIR 21 246 -16 200 163 23 0 chr3 109233482 109233525 -108803633 + (CATA)n Simple_repeat Simple_repeat 4 47 0 329 232 54 36 chr3 109233603 109233715 -108803443 + MIR SINE MIR 60 173 -89 246 245 30 5 chr3 109233968 109234055 -108803103 - MIR SINE MIR -62 146 67 23 33 0 0 chr3 109234272 109234302 -108802856 + AT_rich Low_complexity Low_complexity 1 30 0 193 89 44 0 chr3 109234938 109234983 -108802175 + (TA)n Simple_repeat Simple_repeat 2 48 0 2142 98 0 3 chr3 109234983 109235268 -108801890 - AluY SINE Alu -27 284 1 390 251 196 38 chr3 109235273 109235603 -108801555 + L1ME LINE L1 5261 5552 -614 387 209 0 0 chr3 109237320 109237435 -108799723 + (TA)n Simple_repeat Simple_repeat 2 116 0 261 169 0 0 chr3 109238467 109238526 -108798632 + (TA)n Simple_repeat Simple_repeat 2 60 0 6229 47 0 0 chr3 109238994 109239774 -108797384 - L1P LINE L1 -880 5266 4487 4775 34 19 0 chr3 109239774 109240355 -108796803 + L1P LINE L1 3890 4481 -1665 444 301 42 42 chr3 109240760 109240953 -108796205 - L3 LINE CR1 -470 1107 915 24 85 0 0 chr3 109241927 109241986 -108795172 + AT_rich Low_complexity Low_complexity 1 59 0 25 0 0 0 chr3 109243593 109243618 -108793540 + AT_rich Low_complexity Low_complexity 1 25 0 656 129 97 0 chr3 109243645 109243769 -108793389 - L1P LINE L1 -816 5330 5195 392 326 70 13 chr3 109243884 109244111 -108793047 + L1MCb LINE L1 306 545 -5500 837 272 37 44 chr3 109244240 109244380 -108792778 + L1MCb LINE L1 570 709 -5336 2681 124 11 36 chr3 109244380 109244823 -108792335 + MER57B LTR ERV1 1 432 -2 837 272 37 44 chr3 109244823 109245034 -108792124 + L1MCb LINE L1 709 905 -5140 5326 88 21 4 chr3 109245704 109247125 -108790033 + L1PA6 LINE L1 4657 6098 -56 2094 120 3 0 chr3 109247296 109247595 -108789563 + AluY SINE Alu 1 300 -11 826 216 0 6 chr3 109247601 109247763 -108789395 + FRAM SINE Alu 4 164 -12 223 190 30 20 chr3 109248525 109248625 -108788533 + GA-rich Low_complexity Low_complexity 1 101 0 753 211 0 11 chr3 109248737 109248912 -108788246 + LTR13 LTR ERVK 835 1007 0 1608 51 0 14 chr3 109248948 109249162 -108787996 - AluY SINE Alu -7 304 94 281 262 25 25 chr3 109249194 109249316 -108787842 + CT-rich Low_complexity Low_complexity 1 122 0 201 74 0 0 chr3 109249390 109249417 -108787741 + (C)n Simple_repeat Simple_repeat 1 27 0 206 371 0 28 chr3 109249448 109249626 -108787532 + C-rich Low_complexity Low_complexity 5 177 0 332 250 36 10 chr3 109250434 109250531 -108786627 + MLT1H LTR MaLR 421 514 -35 228 248 191 9 chr3 109250581 109250686 -108786472 - MER94 DNA DNA 0 134 11 470 297 9 47 chr3 109250690 109250902 -108786256 + L1ME LINE L1 5615 5818 -344 307 309 24 8 chr3 109250996 109251119 -108786039 - LTR16A LTR ERVL -25 425 301 1525 223 132 42 chr3 109251475 109251977 -108785181 + LTR10B LTR ERV1 1 547 0 1321 301 43 17 chr3 109252470 109252999 -108784159 + L1MCb LINE L1 3 545 -5500 1381 241 95 25 chr3 109253128 109253268 -108783890 + L1MCb LINE L1 570 699 -5817 2670 124 11 36 chr3 109253268 109253711 -108783447 + MER57B LTR ERV1 1 432 -2 1381 241 95 25 chr3 109253711 109254476 -108782682 + L1MCb LINE L1 699 1531 -4985 458 239 58 26 chr3 109254486 109254641 -108782517 + L1MCb LINE L1 1567 1726 -4838 31 0 0 0 chr3 109254763 109254794 -108782364 + AT_rich Low_complexity Low_complexity 1 31 0 1981 117 0 21 chr3 109254794 109255075 -108782083 - AluSg SINE Alu -35 275 1 1037 297 40 13 chr3 109255100 109255572 -108781586 + L1MCb LINE L1 2531 3015 -3549 431 184 0 0 chr3 109255586 109255662 -108781496 + L1PA7 LINE L1 1649 1724 -4737 17007 93 11 0 chr3 109255662 109258894 -108778264 + L1PA7 LINE L1 3210 6464 -5 349 106 0 30 chr3 109259000 109259066 -108778092 + (TA)n Simple_repeat Simple_repeat 2 65 0 388 309 64 48 chr3 109260077 109260391 -108776767 + L1MEd LINE L1 628 946 -5173 22 80 0 0 chr3 109260411 109260461 -108776697 + AT_rich Low_complexity Low_complexity 1 50 0 475 281 109 22 chr3 109260470 109260737 -108776421 + L1MEd LINE L1 968 1257 -4862 342 307 68 58 chr3 109260741 109260946 -108776212 + L1MEd LINE L1 1301 1507 -4803 384 262 70 53 chr3 109260963 109261150 -108776008 - L1M4 LINE L1 -935 5211 5022 207 0 0 0 chr3 109264325 109264348 -108772810 + (CA)n Simple_repeat Simple_repeat 1 23 0 23 92 0 0 chr3 109265336 109265401 -108771757 + AT_rich Low_complexity Low_complexity 1 65 0 2045 118 0 3 chr3 109265401 109265688 -108771470 - AluSg SINE Alu -24 286 1 356 285 203 32 chr3 109265777 109266023 -108771135 + L1ME LINE L1 5356 5552 -614 366 139 0 0 chr3 109268859 109268931 -108768227 + (TA)n Simple_repeat Simple_repeat 1 72 0 426 369 37 8 chr3 109269599 109269840 -108767318 - ERVL LTR ERVL -4728 1036 789 230 0 33 0 chr3 109270361 109270391 -108766767 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1245 204 37 71 chr3 109270397 109270691 -108766467 - AluJb SINE Alu -24 288 5 185 366 10 30 chr3 109271453 109271554 -108765604 - L2 LINE L2 -207 3106 3008 286 369 108 47 chr3 109271841 109272269 -108764889 - L2 LINE L2 -2180 1134 681 315 337 22 0 chr3 109272405 109272497 -108764661 + MIR SINE MIR 19 112 -150 21 57 0 0 chr3 109272970 109273005 -108764153 + AT_rich Low_complexity Low_complexity 1 35 0 204 40 0 0 chr3 109273050 109273075 -108764083 + (TG)n Simple_repeat Simple_repeat 2 26 0 259 253 51 13 chr3 109274370 109274449 -108762709 - L2 LINE L2 -1 3312 3231 340 306 88 6 chr3 109274903 109275063 -108762095 - L1M4 LINE L1 -2381 3765 3593 540 254 82 37 chr3 109275090 109275492 -108761666 - L1M4 LINE L1 -2635 3511 3092 6577 219 32 8 chr3 109275500 109278243 -108758915 - L1MC1 LINE L1 -63 7065 4258 849 220 45 58 chr3 109278314 109278627 -108758531 - L1M4 LINE L1 -3139 3007 2699 423 234 168 9 chr3 109278775 109278882 -108758276 - FLAM_A SINE Alu -9 124 1 490 295 138 49 chr3 109279061 109279512 -108757646 - L1MC1 LINE L1 -3992 3130 2640 186 219 0 0 chr3 109280071 109280103 -108757055 - MIR SINE MIR -13 249 218 503 201 48 67 chr3 109280204 109280326 -108756832 - L1MC1 LINE L1 -4657 2465 2347 695 207 0 15 chr3 109280326 109280461 -108756697 + FLAM_A SINE Alu 1 133 0 503 201 48 67 chr3 109280461 109280547 -108756611 - L1MC1 LINE L1 -4775 2347 2261 228 67 0 0 chr3 109280946 109280976 -108756182 + (T)n Simple_repeat Simple_repeat 1 30 0 645 347 63 9 chr3 109281031 109281460 -108755698 - L1MC1 LINE L1 -5947 476 25 1716 85 8 8 chr3 109281508 109281744 -108755414 + AluY SINE Alu 75 310 -1 18528 45 15 0 chr3 109281795 109284867 -108752291 + L1PA4 LINE L1 3065 6154 -1 321 258 31 10 chr3 109285688 109285785 -108751373 - L2 LINE L2 -1 3312 3214 516 270 60 35 chr3 109286270 109286470 -108750688 - MER63A DNA MER1_type -2 208 4 458 291 50 28 chr3 109286997 109287179 -108749979 - MER68 LTR ERV1 -127 435 250 1328 210 27 56 chr3 109287179 109287555 -108749603 + MLT1A1 LTR MaLR 1 365 0 1420 165 8 16 chr3 109287555 109287798 -108749360 - MER68 LTR ERV1 -308 254 14 41 0 0 0 chr3 109288173 109288214 -108748944 + AT_rich Low_complexity Low_complexity 1 41 0 1126 301 103 2 chr3 109288218 109288713 -108748445 - L2 LINE L2 -942 2372 1828 11283 213 44 10 chr3 109288716 109291249 -108745909 + L1PA13 LINE L1 2 2635 -4162 * 12017 196 25 7 chr3 109291240 109293756 -108743402 + L1PA13 LINE L1 3143 5703 -1094 3584 163 5 27 chr3 109293763 109293967 -108743191 + L1PA13 LINE L1 6052 6259 -555 341 43 0 0 chr3 109293967 109294013 -108743145 - MADE1 DNA Mariner -34 46 1 3584 163 5 27 chr3 109294013 109294568 -108742590 + L1PA13 LINE L1 6259 6809 -5 429 266 90 34 chr3 109294751 109294928 -108742230 - L2 LINE L2 -1807 1507 1321 1987 124 4 0 chr3 109295051 109295325 -108741833 - AluSp SINE Alu -38 275 1 21 36 0 0 chr3 109295503 109295531 -108741627 + AT_rich Low_complexity Low_complexity 1 28 0 1001 304 82 35 chr3 109296129 109296704 -108740454 + L1MCa LINE L1 50 651 -5775 3377 250 79 77 chr3 109296838 109298117 -108739041 + L1MCa LINE L1 2450 3723 -2703 2108 102 0 0 chr3 109298117 109298427 -108738731 + AluSq SINE Alu 1 310 0 3377 250 79 77 chr3 109298427 109299316 -108737842 + L1MCa LINE L1 3723 4608 -1818 22 0 0 0 chr3 109299663 109299685 -108737473 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr3 109299757 109299799 -108737359 + AT_rich Low_complexity Low_complexity 1 42 0 2464 244 35 23 chr3 109299868 109300602 -108736556 - L1ME2 LINE L1 -68 6096 5354 360 301 14 32 chr3 109300634 109300815 -108736343 - L1ME3 LINE L1 -333 5829 5657 338 213 85 73 chr3 109301587 109301751 -108735407 - L1ME2 LINE L1 -2948 3198 3033 24 53 0 0 chr3 109301817 109301855 -108735303 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr3 109302311 109302341 -108734817 + AT_rich Low_complexity Low_complexity 1 30 0 2022 202 73 53 chr3 109302341 109302422 -108734736 - L1MB1 LINE L1 -1 6167 6089 728 202 8 0 chr3 109302422 109302551 -108734607 + FLAM_A SINE Alu 2 131 -2 2022 202 73 53 chr3 109302551 109302978 -108734180 - L1MB1 LINE L1 -79 6089 5649 2368 66 0 31 chr3 109303322 109303640 -108733518 - AluY SINE Alu -3 308 1 198 103 0 0 chr3 109303903 109303932 -108733226 + (TG)n Simple_repeat Simple_repeat 2 30 0 348 43 0 0 chr3 109303940 109303986 -108733172 + (GA)n Simple_repeat Simple_repeat 2 47 0 298 160 40 0 chr3 109303986 109304036 -108733122 - AluS SINE Alu -29 272 221 314 311 22 76 chr3 109304056 109304281 -108732877 - L1MC/D LINE L1 -2004 5804 5592 363 358 67 14 chr3 109304290 109304575 -108732583 - L1MC/D LINE L1 -559 5603 5304 579 270 44 13 chr3 109304971 109305172 -108731986 + MLT1H LTR MaLR 38 264 -291 1746 123 67 0 chr3 109305385 109305670 -108731488 - L1PA12 LINE L1 0 6168 5865 440 153 65 16 chr3 109306178 109306302 -108730856 + L1PA2 LINE L1 6021 6150 -5 21 0 0 0 chr3 109306713 109306734 -108730424 + AT_rich Low_complexity Low_complexity 1 21 0 292 276 13 13 chr3 109307199 109307275 -108729883 + L2 LINE L2 3185 3260 -12 21 0 0 0 chr3 109307648 109307669 -108729489 + AT_rich Low_complexity Low_complexity 1 21 0 315 299 23 0 chr3 109307977 109308064 -108729094 + L2 LINE L2 3184 3272 0 2966 178 61 30 chr3 109308234 109309019 -108728139 + L1MC2 LINE L1 5121 5925 -419 5695 161 73 25 chr3 109309030 109309629 -108727529 + Tigger3b DNA MER2_type 14 583 -2445 2001 137 0 10 chr3 109309629 109309935 -108727223 + AluSc SINE Alu 1 303 -6 5695 161 73 25 chr3 109309935 109310488 -108726670 + Tigger3b DNA MER2_type 583 1221 -10 1852 175 28 42 chr3 109310488 109310922 -108726236 + L1MC2 LINE L1 5908 6335 -9 329 338 39 13 chr3 109311199 109311353 -108725805 + L1M4 LINE L1 3687 3844 -2302 440 250 12 67 chr3 109312294 109312458 -108724700 - L1ME3A LINE L1 -282 5888 5734 1600 212 55 34 chr3 109315967 109316349 -108720809 - MSTD LTR MaLR -6 390 1 5211 264 93 27 chr3 109316353 109317792 -108719366 - MSTD-int LTR MaLR -4 1731 174 2730 16 0 3 chr3 109317792 109318102 -108719056 - AluY SINE Alu -2 309 1 5211 264 93 27 chr3 109318102 109318260 -108718898 - MSTD-int LTR MaLR -1561 174 28 1343 257 34 29 chr3 109318278 109318666 -108718492 - MSTD LTR MaLR 0 467 1 1041 217 29 69 chr3 109318670 109319048 -108718110 - MSTD LTR MaLR 0 365 3 237 139 0 0 chr3 109319615 109319658 -108717500 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 8994 209 81 32 chr3 109319940 109323186 -108713972 + L1M4c LINE L1 4 3410 -2972 616 218 230 57 chr3 109323186 109323244 -108713914 - MSTD LTR MaLR -3 393 346 2280 115 0 0 chr3 109323244 109323556 -108713602 + AluSx SINE Alu 1 312 0 616 218 230 57 chr3 109323556 109323832 -108713326 - MSTD LTR MaLR -50 346 1 4251 153 8 23 chr3 109323839 109324589 -108712569 - Tigger1 DNA MER2_type 0 2418 1680 6725 180 28 12 chr3 109324610 109328434 -108708724 - L1MA3 LINE L1 0 7724 2893 2078 216 42 36 chr3 109328450 109328624 -108708534 + L1M3 LINE L1 5004 5176 -1007 644 38 0 0 chr3 109328624 109328704 -108708454 - L1PA11 LINE L1 0 6174 6095 2078 216 42 36 chr3 109328704 109329314 -108707844 + L1M3 LINE L1 5176 5764 -419 2214 183 78 19 chr3 109329488 109329993 -108707165 + LTR26B LTR ERV1 1 521 -10 1838 236 21 7 chr3 109330248 109330668 -108706490 - MSTB LTR MaLR 0 426 1 247 305 53 0 chr3 109332793 109332924 -108704234 + L1ME4a LINE L1 5807 5944 -177 1699 172 10 32 chr3 109333060 109333374 -108703784 + AluJb SINE Alu 1 307 -5 224 266 101 13 chr3 109333443 109333540 -108703618 + MIR SINE MIR 84 146 -62 242 294 84 25 chr3 109333560 109333679 -108703479 + MIR SINE MIR 110 235 -27 1070 269 114 17 chr3 109333711 109334072 -108703086 + MSTD LTR MaLR 1 396 0 204 360 90 10 chr3 109334275 109334375 -108702783 - L2 LINE L2 -9 3304 3197 826 284 65 9 chr3 109334593 109334822 -108702336 - MER21B LTR ERV1 -606 257 16 1955 249 29 31 chr3 109334838 109335453 -108701705 - L1MA9 LINE L1 -55 6257 5644 2590 234 14 30 chr3 109335454 109335532 -108701626 - Tigger7 DNA MER2_type -2 2585 2507 266 0 0 29 chr3 109335532 109335567 -108701591 + (TA)n Simple_repeat Simple_repeat 1 34 0 2590 234 14 30 chr3 109335567 109336190 -108700968 - Tigger7 DNA MER2_type -80 2507 3 1693 190 50 14 chr3 109336191 109336597 -108700561 - L1MA9 LINE L1 -665 5647 5227 636 197 26 77 chr3 109336597 109336831 -108700327 - L1MA9 LINE L1 -875 5271 5050 34 42 0 0 chr3 109336831 109336879 -108700279 + AT_rich Low_complexity Low_complexity 1 48 0 647 267 0 0 chr3 109337727 109337858 -108699300 + Tigger3b DNA MER2_type 1 131 -1100 3435 174 34 32 chr3 109337875 109338102 -108699056 - MER50 LTR ERV1 -20 714 489 2266 95 0 0 chr3 109338102 109338408 -108698750 - AluY SINE Alu 0 311 6 3435 174 34 32 chr3 109338408 109338893 -108698265 - MER50 LTR ERV1 -245 489 1 * 5510 145 65 36 chr3 109338893 109339188 -108697970 + Tigger3b DNA MER2_type 124 408 -2620 2278 67 0 0 chr3 109339188 109339527 -108697631 + AluY SINE Alu 1 339 0 5510 145 65 36 chr3 109339527 109340305 -108696853 + Tigger3b DNA MER2_type 408 1230 -1 21 0 0 0 chr3 109340381 109340402 -108696756 + AT_rich Low_complexity Low_complexity 1 21 0 401 310 82 60 chr3 109340405 109340721 -108696437 + HAL1b LINE L1 119 441 -907 2319 82 0 0 chr3 109340946 109341249 -108695909 + AluY SINE Alu 1 303 -8 39 68 0 0 chr3 109342032 109342106 -108695052 + AT_rich Low_complexity Low_complexity 1 74 0 1495 192 151 3 chr3 109342385 109342729 -108694429 + MSTD LTR MaLR 2 396 0 202 192 19 19 chr3 109343836 109343888 -108693270 + (TAA)n Simple_repeat Simple_repeat 2 53 0 202 273 36 0 chr3 109344148 109344203 -108692955 + MIR SINE MIR 201 257 -5 43 54 0 21 chr3 109345293 109345359 -108691799 + AT_rich Low_complexity Low_complexity 1 66 -25 1047 147 0 0 chr3 109345359 109345522 -108691636 - U1 snRNA snRNA 0 165 3 43 54 0 21 chr3 109345522 109345548 -108691610 + AT_rich Low_complexity Low_complexity 66 91 0 181 213 82 16 chr3 109345872 109345933 -108691225 + L2 LINE L2 2510 2574 -740 844 300 18 25 chr3 109346278 109346561 -108690597 + MLT2E LTR ERVL 10 290 -338 3125 146 135 9 chr3 109346819 109347366 -108689792 + MER51A LTR ERV1 1 616 -18 264 184 20 0 chr3 109347393 109347442 -108689716 + MLT2E LTR ERVL 577 626 -2 338 333 33 13 chr3 109347627 109347780 -108689378 + L2 LINE L2 3158 3313 0 2180 122 0 6 chr3 109348383 109348695 -108688463 + AluY SINE Alu 1 310 -1 626 230 0 22 chr3 109349002 109349137 -108688021 + FLAM_A SINE Alu 1 132 -1 226 229 48 124 chr3 109349247 109349352 -108687806 + MER91C DNA MER1_type 13 109 -31 238 234 0 16 chr3 109349586 109349650 -108687508 - LTR33A LTR ERVL -17 506 444 394 257 50 55 chr3 109351436 109351620 -108685538 + MIR SINE MIR 38 222 -40 278 252 44 13 chr3 109351646 109351805 -108685353 + (TA)n Simple_repeat Simple_repeat 1 164 0 181 387 0 0 chr3 109351806 109351881 -108685277 + L2 LINE L2 3234 3308 -5 242 197 33 0 chr3 109351934 109351995 -108685163 + (TA)n Simple_repeat Simple_repeat 1 63 0 201 39 0 0 chr3 109352011 109352037 -108685121 + (TG)n Simple_repeat Simple_repeat 2 27 0 226 202 9 61 chr3 109353112 109353226 -108683932 + A-rich Low_complexity Low_complexity 1 108 0 387 237 0 0 chr3 109353429 109353505 -108683653 + MER3 DNA MER1_type 1 76 -133 785 11 0 0 chr3 109353505 109353595 -108683563 - L1P3 LINE L1 -585 5569 5480 333 109 0 0 chr3 109353748 109353803 -108683355 + (TA)n Simple_repeat Simple_repeat 1 55 0 658 179 0 0 chr3 109353803 109353909 -108683249 + Tigger3(Golem) DNA MER2_type 2924 3029 0 448 240 7 48 chr3 109353965 109354111 -108683047 + MER3 DNA MER1_type 66 205 -4 1312 164 42 42 chr3 109354697 109354983 -108682175 + MER50 LTR ERV1 1 286 -448 1543 196 161 13 chr3 109354983 109355356 -108681802 + MSTA LTR MaLR 1 428 0 8779 160 15 42 chr3 109355358 109356980 -108680178 + MSTA-int LTR MaLR 3 1580 0 1877 168 122 13 chr3 109356980 109357366 -108679792 + MSTA LTR MaLR 1 428 0 2241 206 23 5 chr3 109357366 109357799 -108679359 + MER50 LTR ERV1 282 722 -12 300 268 42 103 chr3 109357895 109358037 -108679121 + L1MCc LINE L1 1139 1253 -5170 450 0 0 0 chr3 109358037 109358087 -108679071 + (TA)n Simple_repeat Simple_repeat 1 50 0 300 268 42 103 chr3 109358087 109358254 -108678904 + L1MCc LINE L1 1253 1429 -4994 1256 146 3 156 chr3 109360117 109360259 -108676899 + AluJo SINE Alu 12 74 -243 2075 122 3 3 chr3 109360259 109360563 -108676595 + AluSc SINE Alu 1 304 -5 1256 146 3 156 chr3 109360563 109360775 -108676383 + AluJo SINE Alu 74 317 0 25 51 0 0 chr3 109362402 109362441 -108674717 + AT_rich Low_complexity Low_complexity 1 39 0 1530 66 0 0 chr3 109364159 109364357 -108672801 + L1PA4 LINE L1 5951 6148 -7 1522 200 0 18 chr3 109364820 109365105 -108672053 + AluJb SINE Alu 7 286 -26 193 348 90 34 chr3 109365216 109365305 -108671853 - L3b LINE CR1 -33 1550 1457 4837 154 29 0 chr3 109365335 109366161 -108670997 - L1PA16 LINE L1 -9 6157 5308 24 32 0 0 chr3 109366164 109366195 -108670963 + AT_rich Low_complexity Low_complexity 1 31 0 6705 148 21 4 chr3 109366195 109368128 -108669030 - L1MA1 LINE L1 -4 6298 4335 3997 239 14 8 chr3 109368128 109368273 -108668885 - L1 LINE L1 -815 5331 5188 507 38 25 13 chr3 109368273 109368352 -108668806 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 3997 239 14 8 chr3 109368352 109369313 -108667845 - L1 LINE L1 -958 5188 4219 433 243 39 0 chr3 109370198 109370301 -108666857 - LTR40b LTR ERVL -7 455 349 445 281 14 23 chr3 109370409 109370626 -108666532 - L1MEc LINE L1 -4146 2250 2036 1258 117 0 36 chr3 109370627 109370823 -108666335 - THE1C LTR MaLR -186 189 1 1052 87 58 6 chr3 109370823 109370996 -108666162 - THE1C-int LTR MaLR 0 1580 1399 911 99 0 0 chr3 109371046 109371167 -108665991 + THE1C LTR MaLR 1 121 -254 286 57 0 0 chr3 109371158 109371193 -108665965 + THE1B LTR MaLR 330 364 0 * 648 144 0 0 chr3 109371204 109371301 -108665857 + THE1-int LTR MaLR 1142 1238 -342 2281 227 40 10 chr3 109371336 109371856 -108665302 - MER68 LTR ERV1 -24 538 3 2454 282 60 37 chr3 109371859 109373198 -108663960 + L1M4 LINE L1 2883 4253 -1893 1326 284 60 47 chr3 109373181 109373818 -108663340 + L1MC4 LINE L1 6359 7003 -1039 * 935 270 65 61 chr3 109373812 109374352 -108662806 + L1M4 LINE L1 4704 5245 -901 * 223 229 0 0 chr3 109374358 109374393 -108662765 + (TATG)n Simple_repeat Simple_repeat 3 40 -10 2153 175 23 14 chr3 109374393 109374822 -108662336 + Tigger2a DNA MER2_type 2 434 0 223 229 0 0 chr3 109374822 109374834 -108662324 + (TATG)n Simple_repeat Simple_repeat 39 50 0 243 0 0 0 chr3 109374837 109374864 -108662294 + (CA)n Simple_repeat Simple_repeat 2 28 0 823 173 0 0 chr3 109374917 109375044 -108662114 + FLAM_C SINE Alu 1 127 -6 531 287 169 33 chr3 109375840 109376112 -108661046 - L2 LINE L2 0 3313 3005 266 216 81 0 chr3 109376253 109376327 -108660831 - MER20 DNA MER1_type 0 219 140 1000 135 11 3 chr3 109376327 109376594 -108660564 + MER1B DNA MER1_type 1 337 -2 491 228 35 48 chr3 109376594 109376726 -108660432 - MER20 DNA MER1_type -66 153 24 714 314 171 55 chr3 109376784 109377487 -108659671 - L2 LINE L2 -437 2877 2094 454 200 0 0 chr3 109377861 109377936 -108659222 + MER1B DNA MER1_type 1 75 -262 * 946 155 61 28 chr3 109377931 109378112 -108659046 + MER1B DNA MER1_type 151 337 -2 25 31 0 0 chr3 109378150 109378182 -108658976 + AT_rich Low_complexity Low_complexity 1 32 0 388 282 37 37 chr3 109378467 109378630 -108658528 + MLT1A1 LTR MaLR 1 163 -202 394 171 28 107 chr3 109378741 109378836 -108658322 + MLT1A1 LTR MaLR 230 372 -56 5306 152 6 0 chr3 109378856 109379023 -108658135 - L1PA16 LINE L1 -2 6164 5999 1706 153 194 6 chr3 109379023 109379383 -108657775 - MSTA LTR MaLR 0 428 1 5306 152 6 0 chr3 109379383 109380497 -108656661 - L1PA16 LINE L1 -167 5999 4879 2084 143 0 0 chr3 109380498 109380798 -108656360 - AluSg SINE Alu -10 300 1 227 128 0 0 chr3 109380925 109380964 -108656194 + MLT1A1 LTR MaLR 369 407 -21 42 65 0 0 chr3 109381841 109381918 -108655240 + AT_rich Low_complexity Low_complexity 1 77 0 4615 164 47 65 chr3 109382427 109383485 -108653673 - L1MA4 LINE L1 0 6300 5262 31 44 0 0 chr3 109383486 109383531 -108653627 + AT_rich Low_complexity Low_complexity 1 45 0 4143 132 58 70 chr3 109383548 109384351 -108652807 + LTR25 LTR ERV1 1 794 0 1192 119 29 14 chr3 109384369 109384579 -108652579 - L1MA2 LINE L1 -23 6281 6069 326 211 154 39 chr3 109385586 109385690 -108651468 - MLT1H LTR MaLR -304 245 130 395 164 36 21 chr3 109387270 109387410 -108649748 + (TATG)n Simple_repeat Simple_repeat 3 144 0 538 282 80 115 chr3 109387987 109388683 -108648475 - L2 LINE L2 0 3313 2636 300 248 120 84 chr3 109388689 109388939 -108648219 - LTR41 LTR ERVL -6 767 509 511 285 50 34 chr3 109389238 109389417 -108647741 - LTR41 LTR ERVL -585 188 7 777 323 105 22 chr3 109389426 109389921 -108647237 - L2 LINE L2 -681 2633 2098 287 313 90 30 chr3 109389940 109390074 -108647084 - L2 LINE L2 -2032 1282 1141 23 33 0 0 chr3 109390605 109390635 -108646523 + AT_rich Low_complexity Low_complexity 1 30 0 1425 146 16 5 chr3 109390812 109391182 -108645976 + L1MA5 LINE L1 5869 6293 -7 381 90 81 0 chr3 109391377 109391488 -108645670 + (TA)n Simple_repeat Simple_repeat 1 120 0 224 316 0 26 chr3 109391488 109391564 -108645594 + L2 LINE L2 1705 1778 -1536 707 276 80 4 chr3 109391773 109391998 -108645160 - MLT1H LTR MaLR -307 242 1 4205 42 0 0 chr3 109392294 109392819 -108644339 - L1PA3 LINE L1 -3654 2492 1968 24005 34 2 0 chr3 109392819 109396523 -108640635 + L1PA3 LINE L1 2467 6172 0 363 257 86 57 chr3 109396524 109396664 -108640494 + L2 LINE L2 3167 3310 -3 187 292 97 53 chr3 109396832 109396945 -108640213 + L2 LINE L2 2261 2378 -936 252 0 0 0 chr3 109397644 109397672 -108639486 + (A)n Simple_repeat Simple_repeat 1 28 0 202 273 34 68 chr3 109398172 109398260 -108638898 - MIR SINE MIR -158 104 20 251 191 0 32 chr3 109400587 109400650 -108636508 + T-rich Low_complexity Low_complexity 3 63 0 4257 290 44 14 chr3 109400761 109402112 -108635046 + L1MA4A LINE L1 777 1981 -4868 5979 176 20 27 chr3 109402113 109402819 -108634339 + L1MA4A LINE L1 4728 5438 -1567 2284 66 0 11 chr3 109402819 109403132 -108634026 - AluY SINE Alu 0 310 1 5979 176 20 27 chr3 109403132 109403299 -108633859 + L1MA4A LINE L1 5438 5605 -1400 2054 127 0 3 chr3 109403299 109403583 -108633575 + AluSx SINE Alu 5 287 -25 242 29 29 0 chr3 109403586 109403621 -108633537 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 5979 176 20 27 chr3 109403621 109404333 -108632825 + L1MA4A LINE L1 5607 6291 -714 1780 86 127 0 chr3 109404333 109404600 -108632558 - AluSx SINE Alu -10 302 2 5979 176 20 27 chr3 109404600 109405304 -108631854 + L1MA4A LINE L1 6291 6999 -6 870 276 54 8 chr3 109405730 109406091 -108631067 - MER89 LTR ERV1 -81 478 1 1067 209 10 0 chr3 109406094 109406290 -108630868 - MER89-int LTR ERV1 -2 6799 6602 * 2691 263 59 20 chr3 109406288 109407261 -108629897 - MER89-int LTR ERV1 -3233 3568 2546 492 268 7 7 chr3 109407470 109407612 -108629546 - MER89-int LTR ERV1 -4982 1819 1678 1134 150 0 0 chr3 109407816 109407996 -108629162 + AluSg/x SINE Alu 129 308 -4 1638 241 65 64 chr3 109407996 109408593 -108628565 - MER89-int LTR ERV1 -5290 1511 914 1245 234 69 36 chr3 109408593 109408956 -108628202 + MSTD LTR MaLR 8 382 -14 1329 279 87 76 chr3 109409195 109409908 -108627250 - MER89-int LTR ERV1 -6080 721 1 1178 212 75 51 chr3 109409908 109410140 -108627018 - MER89 LTR ERV1 0 559 334 1525 225 36 25 chr3 109410140 109410500 -108626658 - MLT1A1 LTR MaLR 0 365 2 1178 212 75 51 chr3 109410500 109410716 -108626442 - MER89 LTR ERV1 -225 334 1 26 0 0 0 chr3 109411040 109411066 -108626092 + AT_rich Low_complexity Low_complexity 1 26 0 201 328 31 0 chr3 109411382 109411446 -108625712 + L2 LINE L2 3207 3272 0 21 0 0 0 chr3 109411536 109411557 -108625601 + AT_rich Low_complexity Low_complexity 1 21 0 285 272 11 5 chr3 109411582 109411706 -108625452 + A-rich Low_complexity Low_complexity 1 124 0 25 51 0 0 chr3 109412403 109412442 -108624716 + AT_rich Low_complexity Low_complexity 1 39 0 1321 186 85 30 chr3 109412519 109412814 -108624344 + AluJb SINE Alu 1 311 -1 2080 117 7 0 chr3 109412817 109413108 -108624050 - AluSc SINE Alu -16 293 1 21 36 0 0 chr3 109413176 109413204 -108623954 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 109415857 109415878 -108621280 + AT_rich Low_complexity Low_complexity 1 21 0 202 204 0 0 chr3 109417413 109417432 -108619726 + (TAAA)n Simple_repeat Simple_repeat 4 22 -25 1974 109 44 10 chr3 109417432 109417726 -108619432 + AluSx SINE Alu 1 304 -8 202 204 0 0 chr3 109417726 109417750 -108619408 + (TAAA)n Simple_repeat Simple_repeat 21 47 0 337 310 115 32 chr3 109417912 109418383 -108618775 - L1MC5 LINE L1 -105 7856 7347 490 257 24 52 chr3 109418952 109419186 -108617972 - L1MC5 LINE L1 -1039 6956 6695 329 220 184 80 chr3 109419186 109419302 -108617856 - Charlie2 DNA MER1_type -174 2688 2585 2302 82 0 0 chr3 109419302 109419595 -108617563 - AluY SINE Alu -18 293 1 329 220 184 80 chr3 109419595 109419891 -108617267 - Charlie2 DNA MER1_type -277 2585 2233 555 268 59 48 chr3 109419949 109420221 -108616937 - Charlie2 DNA MER1_type -2587 275 1 211 385 15 15 chr3 109422811 109422941 -108614217 + MIR SINE MIR 21 150 -112 310 398 50 14 chr3 109423123 109423402 -108613756 - L2 LINE L2 -1 3312 3024 2268 130 25 0 chr3 109423735 109424090 -108613068 - THE1B LTR MaLR 0 364 1 297 359 35 5 chr3 109424327 109424525 -108612633 - L1MC5 LINE L1 -2027 5781 5578 183 222 0 0 chr3 109424532 109424577 -108612581 + (TATG)n Simple_repeat Simple_repeat 2 46 0 1698 96 4 0 chr3 109424802 109425032 -108612126 - AluSp SINE Alu -1 312 82 21 71 0 0 chr3 109425100 109425142 -108612016 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr3 109426703 109426731 -108610427 + AT_rich Low_complexity Low_complexity 1 28 0 372 325 35 41 chr3 109426731 109426900 -108610258 - MIR SINE MIR -78 184 17 1656 155 7 24 chr3 109428118 109428408 -108608750 - AluJo SINE Alu -25 287 3 13602 151 28 6 chr3 109428720 109431086 -108606072 - Tigger1 DNA MER2_type 0 2418 1 228 379 21 0 chr3 109431557 109431652 -108605506 + MIR SINE MIR 55 151 -57 21 36 0 0 chr3 109431780 109431808 -108605350 + AT_rich Low_complexity Low_complexity 1 28 0 34 24 0 0 chr3 109432560 109432601 -108604557 + AT_rich Low_complexity Low_complexity 1 41 0 538 298 129 34 chr3 109434400 109435515 -108601643 + L1ME LINE L1 4095 5315 -831 337 241 37 10 chr3 109436129 109436225 -108600933 + MLT1H LTR MaLR 421 513 -36 228 248 191 9 chr3 109436276 109436381 -108600777 - MER94 DNA DNA 0 134 11 470 297 9 47 chr3 109436385 109436597 -108600561 + L1ME LINE L1 5615 5818 -344 307 309 24 8 chr3 109436691 109436814 -108600344 - LTR16A LTR ERVL -25 425 301 1525 223 132 42 chr3 109437170 109437672 -108599486 + LTR10B LTR ERV1 1 547 0 1321 301 43 17 chr3 109438165 109438694 -108598464 + L1MCb LINE L1 3 545 -5500 1381 240 95 26 chr3 109438823 109438963 -108598195 + L1MCb LINE L1 570 699 -5817 2733 124 11 23 chr3 109438963 109439400 -108597758 + MER57B LTR ERV1 1 432 -2 1381 240 95 26 chr3 109439400 109440166 -108596992 + L1MCb LINE L1 699 1531 -4985 452 237 58 32 chr3 109440176 109440332 -108596826 + L1MCb LINE L1 1567 1726 -4838 31 0 0 0 chr3 109440454 109440485 -108596673 + AT_rich Low_complexity Low_complexity 1 31 0 1994 114 0 21 chr3 109440485 109440766 -108596392 - AluSg SINE Alu -35 275 1 1037 297 40 13 chr3 109440791 109441263 -108595895 + L1MCb LINE L1 2531 3015 -3549 431 184 0 0 chr3 109441277 109441353 -108595805 + L1PA7 LINE L1 1649 1724 -4737 17039 93 11 0 chr3 109441353 109444585 -108592573 + L1PA7 LINE L1 3210 6464 -5 292 129 0 32 chr3 109444691 109444753 -108592405 + (TA)n Simple_repeat Simple_repeat 2 61 0 388 309 64 48 chr3 109445764 109446078 -108591080 + L1MEd LINE L1 628 946 -5173 22 80 0 0 chr3 109446098 109446148 -108591010 + AT_rich Low_complexity Low_complexity 1 50 0 475 281 109 22 chr3 109446157 109446424 -108590734 + L1MEd LINE L1 968 1257 -4862 342 307 68 58 chr3 109446428 109446633 -108590525 + L1MEd LINE L1 1301 1507 -4803 384 262 70 53 chr3 109446650 109446837 -108590321 - L1M4 LINE L1 -935 5211 5022 207 0 0 0 chr3 109450008 109450031 -108587127 + (CA)n Simple_repeat Simple_repeat 1 23 0 23 92 0 0 chr3 109451018 109451083 -108586075 + AT_rich Low_complexity Low_complexity 1 65 0 2012 115 3 3 chr3 109451083 109451369 -108585789 - AluSg SINE Alu -24 286 1 2000 184 32 3 chr3 109454990 109455364 -108581794 + MLT1B LTR MaLR 3 387 -3 23 54 0 0 chr3 109455875 109455912 -108581246 + AT_rich Low_complexity Low_complexity 1 37 0 347 320 88 5 chr3 109455925 109456119 -108581039 - MIR SINE MIR -1 261 52 212 59 29 0 chr3 109456807 109456841 -108580317 + (TG)n Simple_repeat Simple_repeat 1 35 0 1640 188 73 19 chr3 109458449 109458821 -108578337 + L1ME2 LINE L1 5520 5911 -253 193 398 76 0 chr3 109458979 109459097 -108578061 + MIR SINE MIR 5 131 -131 2561 147 56 2 chr3 109459141 109459569 -108577589 + LTR9B LTR ERV1 5 455 -189 1526 195 66 86 chr3 109459569 109460128 -108577030 + LTR10A LTR ERV1 1 548 -61 1140 129 21 0 chr3 109460142 109460328 -108576830 + LTR9B LTR ERV1 455 644 0 26 0 0 0 chr3 109460452 109460478 -108576680 + AT_rich Low_complexity Low_complexity 1 26 0 316 329 13 45 chr3 109462140 109462295 -108574863 + MIR SINE MIR 111 260 -2 1315 235 41 61 chr3 109462563 109462978 -108574180 + MER39 LTR ERV1 166 707 0 563 194 56 31 chr3 109464503 109464663 -108572495 - MER53 DNA DNA -2 187 24 2327 176 27 29 chr3 109464671 109464715 -108572443 - L1MA9 LINE L1 0 6312 6269 1888 163 39 6 chr3 109464715 109465052 -108572106 - MER7A DNA MER2_type 0 346 1 2327 176 27 29 chr3 109465052 109465410 -108571748 - L1MA9 LINE L1 -43 6269 5909 1820 162 40 30 chr3 109465410 109465781 -108571377 - THE1C LTR MaLR 0 375 1 2327 176 27 29 chr3 109465781 109465889 -108571269 - L1MA9 LINE L1 -403 5909 5802 1725 171 30 3 chr3 109465891 109466225 -108570933 + L1M2 LINE L1 5344 5686 -626 1621 336 130 23 chr3 109466381 109468025 -108569133 - L2 LINE L2 -18 3295 1456 310 229 157 21 chr3 109468098 109468238 -108568920 + L1ME4a LINE L1 5782 5940 -181 21 0 0 0 chr3 109468798 109468819 -108568339 + AT_rich Low_complexity Low_complexity 1 21 0 202 389 46 69 chr3 109469165 109469296 -108567862 + L2 LINE L2 3136 3263 -9 5285 143 48 30 chr3 109470203 109471554 -108565604 - L1MA8 LINE L1 -30 6261 4885 3773 162 39 4 chr3 109471554 109472275 -108564883 + L1PA13 LINE L1 5417 6163 0 27 49 0 0 chr3 109472289 109472330 -108564828 + AT_rich Low_complexity Low_complexity 1 41 0 365 353 0 8 chr3 109473626 109473745 -108563413 - L2 LINE L2 -4 3309 3192 310 221 70 23 chr3 109473995 109474081 -108563077 + L1MCa LINE L1 159 248 -6316 1466 266 55 31 chr3 109474088 109474634 -108562524 + L1MCa LINE L1 111 669 -5376 1635 223 8 27 chr3 109474634 109475010 -108562148 - MLT1B LTR MaLR 0 390 22 596 323 135 31 chr3 109475011 109475721 -108561437 - L1M4 LINE L1 -1783 4363 3580 1898 189 26 0 chr3 109477164 109477508 -108559650 + L1PA13 LINE L1 1 353 -6434 1088 149 0 0 chr3 109477574 109477755 -108559403 - L1 LINE L1 -1399 4747 4567 24 77 0 0 chr3 109477798 109477850 -108559308 + AT_rich Low_complexity Low_complexity 1 52 0 238 278 28 28 chr3 109477946 109478018 -108559140 - L2 LINE L2 0 3272 3201 402 250 48 81 chr3 109478733 109478857 -108558301 + MIR SINE MIR 20 139 -123 215 229 0 0 chr3 109479306 109479354 -108557804 + CT-rich Low_complexity Low_complexity 1 48 0 212 122 24 0 chr3 109479912 109479953 -108557205 + GA-rich Low_complexity Low_complexity 4 45 0 414 0 0 0 chr3 109480461 109480507 -108556651 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 2057 132 22 38 chr3 109481254 109481624 -108555534 - THE1B LTR MaLR 0 364 1 26 64 0 0 chr3 109482632 109482679 -108554479 + AT_rich Low_complexity Low_complexity 1 47 0 272 292 42 42 chr3 109483259 109483379 -108553779 - MER5B DNA MER1_type 0 178 59 1288 224 68 10 chr3 109484216 109484510 -108552648 + MER58B DNA MER1_type 31 341 0 777 222 25 0 chr3 109484519 109484681 -108552477 + MER3 DNA MER1_type 2 167 -42 234 326 49 7 chr3 109484779 109484963 -108552195 + MIR SINE MIR 38 262 0 189 358 37 28 chr3 109485004 109485113 -108552045 - L2 LINE L2 -8 3305 3196 205 285 100 3 chr3 109485504 109485588 -108551570 - MIR SINE MIR -69 139 47 870 217 0 0 chr3 109486517 109486674 -108550484 + FRAM SINE Alu 2 158 -8 810 236 75 14 chr3 109487048 109487260 -108549898 + MER69 DNA AcHobo 20 244 -982 10257 58 0 4 chr3 109487307 109488624 -108548534 + L1P LINE L1 3920 5231 -915 1709 60 0 0 chr3 109488653 109488870 -108548288 - L1PA6 LINE L1 0 6154 5938 550 254 47 17 chr3 109489564 109489800 -108547358 - L1MEc LINE L1 -5162 1234 992 236 339 9 17 chr3 109489801 109489916 -108547242 - L1MEc LINE L1 -6172 224 111 21 0 0 0 chr3 109490650 109490671 -108546487 + AT_rich Low_complexity Low_complexity 1 21 0 376 331 26 71 chr3 109491201 109491509 -108545649 + L1M4 LINE L1 3906 4199 -1947 235 276 17 69 chr3 109491699 109491815 -108545343 + MER5A DNA MER1_type 17 126 -63 1802 146 20 100 chr3 109491827 109491876 -108545282 - L1MA8 LINE L1 -4 6287 6236 1647 193 3 3 chr3 109491876 109492176 -108544982 - AluJb SINE Alu -12 300 1 1802 146 20 100 chr3 109492176 109492579 -108544579 - L1MA8 LINE L1 -55 6236 5874 27 96 0 0 chr3 109492892 109492975 -108544183 + AT_rich Low_complexity Low_complexity 1 83 0 189 0 0 0 chr3 109492981 109493002 -108544156 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 213 39 0 0 chr3 109493001 109493027 -108544131 + (TA)n Simple_repeat Simple_repeat 1 26 0 333 136 0 0 chr3 109493402 109493468 -108543690 + (TTTTA)n Simple_repeat Simple_repeat 2 67 0 1033 252 102 40 chr3 109493967 109494097 -108543061 + L1M4 LINE L1 2653 2774 -3372 2327 64 0 0 chr3 109494097 109494422 -108542736 + AluY SINE Alu 1 325 0 1033 252 102 40 chr3 109494422 109494962 -108542196 + L1M4 LINE L1 2774 3366 -2780 257 279 119 116 chr3 109495056 109495307 -108541851 - L2 LINE L2 -14 3258 3007 1030 208 35 9 chr3 109495362 109495588 -108541570 + MLT2B3 LTR ERVL 1 232 -322 420 240 90 0 chr3 109495881 109495981 -108541177 + MER5A DNA MER1_type 4 112 -77 27 0 0 0 chr3 109496376 109496403 -108540755 + AT_rich Low_complexity Low_complexity 1 27 0 26 30 0 0 chr3 109497375 109497408 -108539750 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr3 109498299 109498321 -108538837 + AT_rich Low_complexity Low_complexity 1 22 0 2342 97 0 0 chr3 109498500 109498810 -108538348 - AluSg SINE Alu 0 310 1 378 0 0 0 chr3 109500627 109500669 -108536489 + (TA)n Simple_repeat Simple_repeat 2 43 0 24 0 0 0 chr3 109501052 109501076 -108536082 + AT_rich Low_complexity Low_complexity 1 24 0 847 224 4 22 chr3 109501542 109501770 -108535388 + L1M4 LINE L1 4978 5201 -945 2290 171 21 46 chr3 109501776 109502257 -108534901 - L1MA8 LINE L1 -289 6002 5534 881 157 48 0 chr3 109502260 109502426 -108534732 + L1MA7 LINE L1 6073 6246 -45 225 192 80 112 chr3 109502446 109502498 -108534660 + L1M4 LINE L1 5188 5240 -906 3265 83 13 28 chr3 109502498 109502880 -108534278 + MLT2A2 LTR ERVL 1 376 -77 2141 118 3 0 chr3 109502880 109503169 -108533989 + AluSg SINE Alu 1 290 -20 3265 83 13 28 chr3 109503169 109503246 -108533912 + MLT2A2 LTR ERVL 376 453 0 11245 107 2 2 chr3 109503249 109504825 -108532333 + THE1B-int LTR MaLR 5 1580 0 2223 124 30 25 chr3 109504825 109505187 -108531971 + THE1B LTR MaLR 1 364 0 225 192 80 112 chr3 109505187 109505254 -108531904 + L1M4 LINE L1 5240 5308 -838 330 299 51 23 chr3 109505719 109505896 -108531262 + L1ME3A LINE L1 1575 1756 -4640 730 157 10 23 chr3 109505896 109505913 -108531245 + GA-rich Low_complexity Low_complexity 1 17 -415 353 300 15 8 chr3 109505913 109506043 -108531115 + FLAM_A SINE Alu 2 132 -1 730 157 10 23 chr3 109506043 109506334 -108530824 + GA-rich Low_complexity Low_complexity 17 432 0 1197 261 104 72 chr3 109506541 109507851 -108529307 + L1ME3A LINE L1 4631 5987 -252 2614 84 12 0 chr3 109507855 109508200 -108528958 + THE1A LTR MaLR 5 353 -2 11079 111 4 11 chr3 109508200 109509774 -108527384 + THE1A-int LTR MaLR 18 1580 0 2407 89 43 20 chr3 109509774 109510121 -108527037 + THE1A LTR MaLR 1 355 0 549 299 48 5 chr3 109510121 109510328 -108526830 + L1ME3A LINE L1 5983 6198 -41 773 244 0 0 chr3 109510495 109510675 -108526483 - L1MA3 LINE L1 -292 6013 5834 1061 207 85 83 chr3 109511196 109511618 -108525540 + MER66A LTR ERV1 169 478 0 1680 220 51 28 chr3 109511764 109511851 -108525307 - Charlie1b DNA MER1_type -2239 522 439 2172 174 49 2 chr3 109511851 109512260 -108524898 - MSTA LTR MaLR 0 428 1 1680 220 51 28 chr3 109512260 109512681 -108524477 - Charlie1b DNA MER1_type -2322 439 2 378 0 0 0 chr3 109513420 109513462 -108523696 + (TA)n Simple_repeat Simple_repeat 2 43 0 1525 193 30 13 chr3 109514313 109514618 -108522540 + AluJb SINE Alu 2 311 -1 1804 162 106 23 chr3 109514627 109515022 -108522136 + MSTA LTR MaLR 1 428 0 8691 158 5 59 chr3 109515024 109515373 -108521785 + MSTA-int LTR MaLR 3 369 -1211 1482 129 27 0 chr3 109515373 109515597 -108521561 + MER30 DNA MER1_type 1 230 0 8691 158 5 59 chr3 109515597 109516915 -108520243 + MSTA-int LTR MaLR 369 1580 0 2110 154 86 10 chr3 109516915 109517311 -108519847 + MSTA LTR MaLR 1 426 -2 1317 135 204 91 chr3 109517566 109517929 -108519229 - MER4A LTR ERV1 0 664 261 571 162 0 10 chr3 109517929 109518028 -108519130 - MER4A LTR ERV1 -566 98 1 447 275 116 32 chr3 109519926 109520115 -108517043 + MIR SINE MIR 15 219 -43 333 68 0 0 chr3 109520868 109520912 -108516246 + (TG)n Simple_repeat Simple_repeat 1 44 0 454 378 48 21 chr3 109520977 109521197 -108515961 + L2 LINE L2 974 1207 -2107 953 280 30 57 chr3 109521197 109521668 -108515490 + LTR16B LTR ERVL 3 460 -4 454 378 48 21 chr3 109521668 109521778 -108515380 + L2 LINE L2 1207 1313 -2001 34509 111 14 16 chr3 109521798 109527499 -108509659 + L1P2 LINE L1 11 5688 -466 315 130 0 0 chr3 109527612 109527686 -108509472 - Alu SINE Alu 0 311 238 191 318 59 12 chr3 109528860 109528945 -108508213 + L2 LINE L2 3221 3309 -4 24 53 0 0 chr3 109529903 109529941 -108507217 + AT_rich Low_complexity Low_complexity 1 38 0 7032 12 0 4 chr3 109530085 109530902 -108506256 + L1PA2 LINE L1 5340 6153 -2 22 88 0 0 chr3 109531711 109531768 -108505390 + AT_rich Low_complexity Low_complexity 1 57 0 463 343 36 35 chr3 109532534 109532892 -108504266 + L2 LINE L2 2772 3135 -178 421 244 41 8 chr3 109533009 109533132 -108504026 - MER104 DNA Tc2 -18 162 36 278 152 38 190 chr3 109533156 109533245 -108503913 + L2 LINE L2 3165 3221 -92 2370 65 3 0 chr3 109533245 109533539 -108503619 - AluY SINE Alu -13 298 4 278 152 38 190 chr3 109533539 109533607 -108503551 + L2 LINE L2 3221 3298 -15 2320 95 3 0 chr3 109533736 109534042 -108503116 - AluSx SINE Alu -5 307 1 239 232 0 18 chr3 109534120 109534176 -108502982 + (TG)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr3 109534195 109534216 -108502942 + AT_rich Low_complexity Low_complexity 1 21 0 522 294 82 60 chr3 109534293 109534562 -108502596 - MLT1J LTR MaLR -148 363 89 244 265 29 0 chr3 109535861 109535929 -108501229 - MLT1J LTR MaLR 0 511 442 706 271 62 14 chr3 109535993 109536203 -108500955 + MIR SINE MIR 19 238 -24 247 222 84 62 chr3 109536219 109536375 -108500783 - MLT1H LTR MaLR 0 595 378 420 256 141 26 chr3 109536522 109536678 -108500480 - MLT1H LTR MaLR -374 175 2 1640 225 50 54 chr3 109536835 109537320 -108499838 + MLT1D LTR MaLR 1 483 -22 517 293 0 0 chr3 109537316 109537432 -108499726 - MLT1J LTR MaLR -323 188 73 * 341 308 63 21 chr3 109538430 109538573 -108498585 - MIR SINE MIR -106 156 8 2878 191 54 7 chr3 109538765 109539373 -108497785 - L1MB7 LINE L1 -8 6176 5540 1060 201 21 92 chr3 109539369 109539652 -108497506 + MLT1C-int LTR MaLR 1103 1365 -6 * 1488 232 68 34 chr3 109539657 109540101 -108497057 + MLT1C LTR MaLR 1 459 -8 296 128 21 0 chr3 109540395 109540442 -108496716 + A-rich Low_complexity Low_complexity 5 52 0 477 175 35 14 chr3 109540449 109540592 -108496566 + GA-rich Low_complexity Low_complexity 3 148 0 813 242 48 42 chr3 109541245 109541555 -108495603 - LTR40b LTR ERVL -1 461 150 1592 290 78 13 chr3 109541565 109542092 -108495066 - HERVL40 LTR ERVL -514 5016 4456 183 100 0 0 chr3 109546416 109546446 -108490712 + (GA)n Simple_repeat Simple_repeat 1 30 0 464 241 131 103 chr3 109547000 109547497 -108489661 + MLT1J LTR MaLR 1 511 0 182 411 9 9 chr3 109548647 109548754 -108488404 - MER5A DNA MER1_type -18 171 65 276 30 0 0 chr3 109548757 109548790 -108488368 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 408 20 0 0 chr3 109548789 109548838 -108488320 + (TA)n Simple_repeat Simple_repeat 2 50 0 1079 278 74 60 chr3 109549018 109549464 -108487694 - LTR40b LTR ERVL -10 452 1 21 36 0 0 chr3 109549470 109549498 -108487660 + AT_rich Low_complexity Low_complexity 1 28 0 236 292 0 0 chr3 109550049 109550114 -108487044 + LTR43 LTR ERV1 238 302 -300 313 266 24 16 chr3 109550126 109550250 -108486908 - LTR43 LTR ERV1 -324 278 154 1034 304 62 47 chr3 109550440 109551084 -108486074 - MER66-int LTR ERV1 -52 6624 5971 1695 101 8 0 chr3 109552207 109552444 -108484714 + AluSp SINE Alu 73 311 -2 1561 193 48 7 chr3 109552473 109552591 -108484567 + AluJb SINE Alu 6 118 -194 263 28 28 0 chr3 109552591 109552627 -108484531 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1561 193 48 7 chr3 109552627 109552803 -108484355 + AluJb SINE Alu 118 312 0 1292 322 74 51 chr3 109552894 109553323 -108483835 - MER66-int LTR ERV1 -1508 6248 5831 2278 82 0 0 chr3 109553323 109553616 -108483542 - AluY SINE Alu -18 293 1 1292 322 74 51 chr3 109553616 109554762 -108482396 - MER66-int LTR ERV1 -1925 5831 4636 1042 317 80 69 chr3 109554830 109556459 -108480699 - MER66-int LTR ERV1 -3386 4370 2518 904 336 32 39 chr3 109556795 109557492 -108479666 - MER66-int LTR ERV1 -4021 2655 1964 275 344 65 37 chr3 109557805 109558020 -108479138 - MER66-int LTR ERV1 -5240 1965 1745 224 153 51 51 chr3 109558832 109558891 -108478267 + GA-rich Low_complexity Low_complexity 5 63 0 279 208 91 0 chr3 109559275 109559352 -108477806 - LTR43 LTR ERV1 -291 311 228 6547 76 54 27 chr3 109559766 109560749 -108476409 - L1PA8 LINE L1 -11 6161 5175 1156 248 56 9 chr3 109561249 109561698 -108475460 - MLT1D LTR MaLR -4 501 1 27 73 0 0 chr3 109562479 109562534 -108474624 + AT_rich Low_complexity Low_complexity 1 55 0 2163 281 51 18 chr3 109562559 109563462 -108473696 + L1MEc LINE L1 347 1312 -5409 1176 259 92 35 chr3 109563475 109564239 -108472919 + L1MEc LINE L1 1355 2161 -4560 2449 234 37 24 chr3 109564260 109564706 -108472452 + L1MEc LINE L1 2421 2889 -3651 1945 208 9 25 chr3 109564706 109565143 -108472015 + Tigger2a DNA MER2_type 1 430 -4 2449 234 37 24 chr3 109565143 109565540 -108471618 + L1MEc LINE L1 2889 3279 -3261 951 231 26 71 chr3 109565538 109566002 -108471156 + L1MEc LINE L1 3146 3588 -2952 * 249 83 0 0 chr3 109566109 109566145 -108471013 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 1072 275 96 23 chr3 109566146 109566894 -108470264 - L1MCc LINE L1 -4758 2183 1215 885 308 25 31 chr3 109566905 109567226 -108469932 - L1MCc LINE L1 -5306 1117 799 1256 275 78 23 chr3 109567580 109568056 -108469102 - L1MCc LINE L1 -5905 518 17 291 329 42 42 chr3 109568842 109568985 -108468173 - L2 LINE L2 -9 3263 3121 1109 164 86 23 chr3 109569450 109569670 -108467488 - MER46A DNA MER2_type -1 235 2 508 211 18 0 chr3 109569806 109569915 -108467243 + AluJb SINE Alu 201 311 -1 615 117 0 0 chr3 109569918 109570012 -108467146 + (GGAA)n Simple_repeat Simple_repeat 3 96 0 186 229 0 0 chr3 109570050 109570085 -108467073 - L2 LINE L2 -218 3054 3020 364 409 30 4 chr3 109570146 109570383 -108466775 - L2 LINE L2 -372 2942 2700 30 0 0 0 chr3 109570894 109570924 -108466234 + AT_rich Low_complexity Low_complexity 1 30 0 4657 34 19 0 chr3 109570924 109571490 -108465668 - L1PA5 LINE L1 -7 6147 5571 1425 56 0 0 chr3 109571490 109571669 -108465489 + L1PA5 LINE L1 5384 5562 -592 21 0 0 0 chr3 109571764 109571785 -108465373 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 109572394 109572417 -108464741 + AT_rich Low_complexity Low_complexity 1 23 0 688 333 18 0 chr3 109572423 109572645 -108464513 + LTR16B LTR ERVL 1 226 -238 21 0 0 0 chr3 109573497 109573518 -108463640 + AT_rich Low_complexity Low_complexity 1 21 0 182 255 59 0 chr3 109573613 109573664 -108463494 - MIR SINE MIR -131 131 78 336 307 10 0 chr3 109573670 109573771 -108463387 + MIR SINE MIR 141 242 -20 27 0 0 0 chr3 109574004 109574031 -108463127 + AT_rich Low_complexity Low_complexity 1 27 0 29 0 0 0 chr3 109574068 109574097 -108463061 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr3 109574132 109574161 -108462997 + AT_rich Low_complexity Low_complexity 1 29 0 1389 220 0 16 chr3 109574404 109574718 -108462440 + AluJb SINE Alu 1 309 -3 28 79 0 0 chr3 109574813 109574876 -108462282 + AT_rich Low_complexity Low_complexity 1 63 0 4967 144 2 11 chr3 109575022 109575212 -108461946 - L1PA15 LINE L1 -6 6159 5969 1938 140 0 13 chr3 109575212 109575542 -108461616 - AluSq SINE Alu 0 313 1 4967 144 2 11 chr3 109575542 109576145 -108461013 - L1PA15 LINE L1 -196 5969 5373 4476 199 52 9 chr3 109576150 109577183 -108459975 + L1PA15 LINE L1 4318 5395 -751 246 318 11 0 chr3 109578158 109578246 -108458912 + MIR3 SINE MIR 114 202 -6 183 346 140 0 chr3 109578362 109578469 -108458689 + MIR SINE MIR 53 174 -88 534 170 36 36 chr3 109579061 109579173 -108457985 + FLAM_A SINE Alu 22 133 -9 226 139 23 0 chr3 109579212 109579255 -108457903 - L1MC/D LINE L1 -1894 5914 5871 * 917 239 15 15 chr3 109579249 109579521 -108457637 - L1MD3 LINE L1 -10 7985 7714 * 2660 268 123 25 chr3 109579513 109579578 -108457580 - L1MC4 LINE L1 -947 7095 7038 1954 168 113 10 chr3 109579578 109579966 -108457192 + MSTA LTR MaLR 1 428 0 2660 268 123 25 chr3 109579966 109581115 -108456043 - L1MC4 LINE L1 -1004 7038 5762 225 0 0 0 chr3 109581196 109581221 -108455937 + (CA)n Simple_repeat Simple_repeat 2 26 0 281 217 0 33 chr3 109581231 109581323 -108455835 + L1MC4 LINE L1 6615 6703 -1339 198 167 0 0 chr3 109581325 109581361 -108455797 + (TA)n Simple_repeat Simple_repeat 2 37 0 233 217 0 72 chr3 109581381 109581450 -108455708 + LTR66 LTR ERVL 381 444 -166 189 0 0 0 chr3 109581450 109581471 -108455687 + (TA)n Simple_repeat Simple_repeat 2 22 0 1945 146 3 0 chr3 109581480 109581774 -108455384 - AluSx SINE Alu -17 295 1 520 223 31 0 chr3 109581788 109581918 -108455240 - L1MC4 LINE L1 -827 5319 5186 1064 208 41 9 chr3 109583018 109583239 -108453919 - MER46A DNA MER2_type 0 236 9 23 33 0 0 chr3 109583468 109583498 -108453660 + AT_rich Low_complexity Low_complexity 1 30 0 2257 188 27 2 chr3 109583602 109584016 -108453142 + MSTB LTR MaLR 3 426 0 503 349 78 62 chr3 109584213 109584663 -108452495 + MLT1K LTR MaLR 13 469 -119 2181 67 28 0 chr3 109584971 109585254 -108451904 - AluY SINE Alu -20 291 1 360 239 0 0 chr3 109585508 109585596 -108451562 - L1MC4 LINE L1 -1339 6703 6616 183 190 0 0 chr3 109585636 109585694 -108451464 + (TA)n Simple_repeat Simple_repeat 2 59 0 465 320 20 0 chr3 109586823 109586970 -108450188 + LTR16A LTR ERVL 202 351 -99 288 326 32 32 chr3 109587000 109587095 -108450063 - LTR16A LTR ERVL -263 187 93 494 302 87 21 chr3 109587457 109587699 -108449459 - MIR SINE MIR -2 260 3 255 329 13 0 chr3 109588048 109588127 -108449031 - MER81 DNA DNA -34 80 1 664 47 0 0 chr3 109588643 109588728 -108448430 - L1PA5 LINE L1 -1 6153 6069 436 20 0 0 chr3 109588728 109588779 -108448379 + L1PA5 LINE L1 6017 6067 -87 23 54 0 0 chr3 109589381 109589418 -108447740 + AT_rich Low_complexity Low_complexity 1 37 0 1124 249 14 127 chr3 109589777 109590275 -108446883 + MLT1D-int LTR MaLR 446 887 -484 1114 252 26 88 chr3 109590385 109590805 -108446353 + MLT1D-int LTR MaLR 959 1352 -19 * 5531 169 17 23 chr3 109590801 109591101 -108446057 - L1MA4A LINE L1 -5 7000 6700 324 48 0 0 chr3 109591101 109591143 -108446015 + (CA)n Simple_repeat Simple_repeat 2 43 0 5531 169 17 23 chr3 109591143 109592327 -108444831 - L1MA4A LINE L1 -305 6700 5512 5964 153 24 20 chr3 109592346 109593348 -108443810 - L1MA2 LINE L1 0 7723 6698 2767 10 0 3 chr3 109593348 109593659 -108443499 - AluYa5 SINE Alu -1 310 1 5964 153 24 20 chr3 109593659 109593960 -108443198 - L1MA2 LINE L1 -1025 6698 6400 1326 204 65 53 chr3 109593964 109594362 -108442796 - L1MB8 LINE L1 -41 6137 5735 * 10941 190 33 37 chr3 109594360 109595961 -108441197 - L1MA2 LINE L1 -1153 6412 4806 621 106 0 0 chr3 109595961 109596074 -108441084 + (TA)n Simple_repeat Simple_repeat 2 114 0 10941 190 33 37 chr3 109596074 109598309 -108438849 - L1MA2 LINE L1 -2759 4806 2588 9227 202 106 13 chr3 109598307 109598620 -108438538 - L1MA2 LINE L1 -5412 2153 1871 * 468 0 0 0 chr3 109598620 109598672 -108438486 + (TC)n Simple_repeat Simple_repeat 1 52 0 9227 202 106 13 chr3 109598672 109600311 -108436847 - L1MA2 LINE L1 -5694 1871 19 5465 183 31 121 chr3 109600312 109602041 -108435117 - L1MA4A LINE L1 -1320 5528 3955 1965 169 65 46 chr3 109602047 109602462 -108434696 + MSTA LTR MaLR 1 423 -5 1287 217 52 3 chr3 109602467 109602850 -108434308 - L1MA4A LINE L1 -2895 3953 3552 927 198 39 69 chr3 109602941 109606128 -108431030 - L1MA4A LINE L1 -3685 3163 5 1662 254 43 41 chr3 109606168 109606661 -108430497 + MLT1D LTR MaLR 3 496 -9 216 0 0 0 chr3 109606693 109606717 -108430441 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 713 282 60 41 chr3 109606734 109607153 -108430005 - L1MCc LINE L1 -5973 450 24 2324 53 0 57 chr3 109607433 109607751 -108429407 + AluY SINE Alu 1 300 -11 620 147 10 0 chr3 109607838 109607940 -108429218 - L1PB4 LINE L1 -5 6151 6049 245 274 153 0 chr3 109609645 109609769 -108427389 + MIR SINE MIR 120 262 0 2495 39 0 23 chr3 109609990 109610299 -108426859 - AluY SINE Alu -8 303 2 721 33 0 0 chr3 109610472 109610562 -108426596 + L1M1 LINE L1 2576 2665 -4900 261 57 0 0 chr3 109611558 109611593 -108425565 + (TG)n Simple_repeat Simple_repeat 1 35 0 254 310 159 28 chr3 109611710 109611855 -108425303 - MIR3 SINE MIR -40 168 5 303 368 39 13 chr3 109612676 109612831 -108424327 - MIR SINE MIR -96 166 8 216 0 0 0 chr3 109612832 109612856 -108424302 + (TG)n Simple_repeat Simple_repeat 2 25 0 17216 188 43 15 chr3 109613962 109621450 -108415708 + L1MA2 LINE L1 16 7720 -3 2250 95 10 0 chr3 109621583 109621889 -108415269 - AluSg SINE Alu -1 309 1 228 211 0 39 chr3 109622303 109622355 -108414803 + T-rich Low_complexity Low_complexity 2 51 0 2259 27 0 0 chr3 109623105 109623408 -108413750 + L1PA4 LINE L1 5869 6171 0 546 274 172 0 chr3 109623470 109623656 -108413502 - MIR SINE MIR -14 248 31 1511 263 107 28 chr3 109623737 109624205 -108412953 - MLT1D LTR MaLR 0 505 1 228 237 17 17 chr3 109625131 109625190 -108411968 + (TA)n Simple_repeat Simple_repeat 1 59 0 229 379 124 6 chr3 109626001 109626170 -108410988 - MER5A DNA MER1_type 0 189 1 24 53 0 0 chr3 109626962 109627000 -108410158 + AT_rich Low_complexity Low_complexity 1 38 0 231 272 39 58 chr3 109627341 109627444 -108409714 + MIR SINE MIR 91 191 -71 2253 95 0 3 chr3 109627665 109627970 -108409188 + AluSc SINE Alu 1 304 -5 244 271 0 0 chr3 109628607 109628666 -108408492 + GA-rich Low_complexity Low_complexity 2 60 0 1458 269 71 22 chr3 109630298 109630793 -108406365 + LTR40a LTR ERVL 1 519 0 2493 61 0 0 chr3 109631222 109631533 -108405625 - AluY SINE Alu 0 311 1 225 321 24 0 chr3 109632925 109633009 -108404149 - MLT1J LTR MaLR -317 194 109 16246 31 1 0 chr3 109633060 109635042 -108402116 - L1P LINE L1 -2340 3806 1823 2829 29 0 0 chr3 109635035 109635375 -108401783 - L1PA3 LINE L1 -520 5635 5296 * 4269 30 2 0 chr3 109635375 109635918 -108401240 + L1PA3 LINE L1 5635 6180 0 357 188 12 0 chr3 109636231 109636311 -108400847 - L1MA9 LINE L1 0 6312 6232 1168 166 98 68 chr3 109636311 109636532 -108400626 + L1MA9 LINE L1 5948 6184 -128 324 48 0 0 chr3 109636532 109636574 -108400584 + (CA)n Simple_repeat Simple_repeat 1 42 0 1168 166 98 68 chr3 109636574 109636677 -108400481 + L1MA9 LINE L1 6184 6282 -30 1693 218 93 46 chr3 109636724 109637206 -108399952 - MLT1D LTR MaLR 0 505 1 189 300 67 0 chr3 109637501 109637561 -108399597 + L2 LINE L2 3235 3298 -15 22 56 0 0 chr3 109637763 109637799 -108399359 + AT_rich Low_complexity Low_complexity 1 36 0 216 342 206 21 chr3 109638750 109638993 -108398165 - L3b LINE CR1 -3 1580 1293 37 0 0 0 chr3 109639385 109639422 -108397736 + AT_rich Low_complexity Low_complexity 1 37 0 1574 135 127 0 chr3 109639573 109639918 -108397240 + AluSx SINE Alu 5 381 0 563 294 15 0 chr3 109639971 109640107 -108397051 + LTR67 LTR ERVL 36 173 -384 180 129 0 32 chr3 109640934 109640965 -108396193 + L2 LINE L2 3228 3257 -15 352 310 69 59 chr3 109641246 109641535 -108395623 - MLT1I LTR MaLR -50 359 69 198 0 0 0 chr3 109642449 109642471 -108394687 + (A)n Simple_repeat Simple_repeat 1 22 0 391 278 32 24 chr3 109642791 109642917 -108394241 + L2 LINE L2 3186 3312 -1 22 35 0 0 chr3 109642950 109642979 -108394179 + AT_rich Low_complexity Low_complexity 1 29 0 2011 118 0 10 chr3 109643704 109643992 -108393166 + AluSg SINE Alu 1 285 -25 1963 62 0 19 chr3 109643998 109644256 -108392902 + L1PA6 LINE L1 5901 6153 -1 395 245 216 0 chr3 109644306 109644445 -108392713 - LTR41 LTR ERVL -196 577 409 1294 187 37 77 chr3 109644478 109644804 -108392354 + MLT1A1 LTR MaLR 1 313 -52 28 71 0 0 chr3 109645524 109645580 -108391578 + AT_rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chr3 109645648 109645670 -108391488 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 109645716 109645737 -108391421 + AT_rich Low_complexity Low_complexity 1 21 0 1506 168 9 58 chr3 109648026 109648354 -108388804 - L1MC1 LINE L1 -41 6292 5981 343 104 15 30 chr3 109648641 109648708 -108388450 + (GAAAA)n Simple_repeat Simple_repeat 5 70 0 21 36 0 0 chr3 109649480 109649508 -108387650 + AT_rich Low_complexity Low_complexity 1 28 0 531 269 160 0 chr3 109651529 109651685 -108385473 + MER5A DNA MER1_type 9 189 0 11188 161 46 11 chr3 109651947 109653495 -108383663 - Tigger4(Zombi) DNA MER2_type 0 2731 1087 716 181 0 23 chr3 109653495 109653628 -108383530 + FLAM_C SINE Alu 1 130 -3 11188 161 46 11 chr3 109653628 109654192 -108382966 - Tigger4(Zombi) DNA MER2_type -1644 1087 544 12492 196 42 11 chr3 109654587 109656133 -108381025 - Tigger4(Zombi) DNA MER2_type -2 2729 1064 716 181 0 23 chr3 109656133 109656266 -108380892 + FLAM_C SINE Alu 1 130 -3 12492 196 42 11 chr3 109656266 109657365 -108379793 - Tigger4(Zombi) DNA MER2_type -1667 1064 1 243 369 101 13 chr3 109657465 109657614 -108379544 + L2 LINE L2 2610 2771 -543 300 53 0 0 chr3 109657937 109657975 -108379183 + (CA)n Simple_repeat Simple_repeat 2 39 0 27 0 0 0 chr3 109658534 109658561 -108378597 + GC_rich Low_complexity Low_complexity 1 27 0 1199 218 26 48 chr3 109709392 109709724 -108327434 - MLT1C LTR MaLR -36 354 4 24 77 0 0 chr3 109709977 109710029 -108327129 + AT_rich Low_complexity Low_complexity 1 52 0 710 316 13 8 chr3 109710130 109710364 -108326794 - MIR SINE MIR -23 239 5 23 33 0 0 chr3 109710419 109710449 -108326709 + AT_rich Low_complexity Low_complexity 1 30 0 1121 72 0 7 chr3 109713241 109713380 -108323778 + AluY SINE Alu 1 138 -173 28801 30 0 2 chr3 109713380 109714556 -108322602 + L1PA2 LINE L1 1909 3085 -3070 2523 48 0 7 chr3 109714556 109714865 -108322293 + AluY SINE Alu 1 307 -4 28801 30 0 2 chr3 109714865 109717942 -108319216 + L1PA2 LINE L1 3085 6155 0 1423 79 0 0 chr3 109717951 109718128 -108319030 + AluY SINE Alu 127 303 -8 1118 264 43 56 chr3 109719657 109720123 -108317035 - LTR40b LTR ERVL 0 462 3 21 57 0 0 chr3 109720879 109720914 -108316244 + AT_rich Low_complexity Low_complexity 1 35 0 227 220 98 91 chr3 109721283 109721415 -108315743 - Charlie8 DNA MER1_type -2157 260 128 1625 255 79 44 chr3 109723105 109723690 -108313468 - MER77 LTR ERV1 0 605 1 212 240 0 13 chr3 109724029 109724104 -108313054 + (TA)n Simple_repeat Simple_repeat 2 75 0 216 345 0 18 chr3 109725291 109725346 -108311812 + L2 LINE L2 3195 3248 -24 248 229 43 0 chr3 109726321 109726391 -108310767 + MER3 DNA MER1_type 15 87 -122 227 53 0 26 chr3 109726398 109726436 -108310722 + (TTAAA)n Simple_repeat Simple_repeat 1 37 0 24 67 0 0 chr3 109726655 109726700 -108310458 + AT_rich Low_complexity Low_complexity 1 45 0 263 341 67 19 chr3 109730427 109730635 -108306523 + MLT1J1 LTR MaLR 129 346 -100 8276 120 4 51 chr3 109730827 109731564 -108305594 - HSMAR1 DNA Mariner 0 1287 640 1670 137 0 122 chr3 109731564 109731901 -108305257 - AluSx SINE Alu -6 296 1 8276 120 4 51 chr3 109731901 109732501 -108304657 - HSMAR1 DNA Mariner -647 640 13 2387 87 0 3 chr3 109732522 109732833 -108304325 + AluY SINE Alu 1 310 -1 817 330 16 91 chr3 109732875 109733512 -108303646 - MLT2E LTR ERVL -15 613 25 3608 261 76 43 chr3 109733729 109734923 -108302235 - L1ME2 LINE L1 -10 6154 5001 7139 71 6 17 chr3 109734923 109736558 -108300600 - SVA Other Other -724 1386 1 3608 261 76 43 chr3 109736558 109737275 -108299883 - L1ME2 LINE L1 -1163 5001 4309 1671 213 11 14 chr3 109737275 109737641 -108299517 - MLT1A1 LTR MaLR 0 365 1 3608 261 76 43 chr3 109737641 109739187 -108297971 - L1ME2 LINE L1 -1855 4309 2572 1846 262 97 27 chr3 109739182 109739961 -108297197 + L1ME1 LINE L1 4613 5337 -829 * 276 100 0 0 chr3 109739961 109740001 -108297157 + (CA)n Simple_repeat Simple_repeat 1 40 0 1846 262 97 27 chr3 109740001 109740089 -108297069 + L1ME1 LINE L1 5337 5417 -749 2307 175 26 2 chr3 109740089 109740507 -108296651 - MSTA LTR MaLR 0 428 1 1846 262 97 27 chr3 109740507 109741096 -108296062 + L1ME1 LINE L1 5417 6166 0 1006 171 29 5 chr3 109741226 109741431 -108295727 + L1MA4 LINE L1 6082 6291 -9 25 31 0 0 chr3 109741440 109741472 -108295686 + AT_rich Low_complexity Low_complexity 1 32 0 360 264 123 25 chr3 109741472 109741748 -108295410 + L1M4 LINE L1 4020 4322 -1824 509 349 25 31 chr3 109741873 109742197 -108294961 + L1MDa LINE L1 141 462 -6078 1094 195 102 16 chr3 109742924 109743237 -108293921 + L1MDa LINE L1 1011 1350 -5193 * 1216 218 33 37 chr3 109743235 109743737 -108293421 + L1MDa LINE L1 2238 2732 -3808 42480 35 21 1 chr3 109745220 109751248 -108285910 - L1PA2 LINE L1 0 6155 4 609 324 86 37 chr3 109751740 109752416 -108284742 - HAL1b LINE L1 -611 737 29 221 225 42 14 chr3 109752432 109752503 -108284655 + T-rich Low_complexity Low_complexity 2 74 0 857 284 119 53 chr3 109753218 109753727 -108283431 + L2 LINE L2 2773 3313 0 21 0 0 0 chr3 109753734 109753755 -108283403 + AT_rich Low_complexity Low_complexity 1 21 0 481 304 175 23 chr3 109754064 109754281 -108282877 - MIR SINE MIR 0 262 13 282 345 88 0 chr3 109755125 109755238 -108281920 + L2 LINE L2 3186 3308 -5 24 0 0 0 chr3 109755255 109755279 -108281879 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr3 109755419 109755443 -108281715 + AT_rich Low_complexity Low_complexity 1 24 0 3257 134 10 6 chr3 109755724 109756233 -108280925 - MER9 LTR ERVK 0 511 1 40629 99 10 7 chr3 109756233 109759757 -108277401 - HERVK9 LTR ERVK 0 7969 4456 185 0 40 0 chr3 109759757 109759782 -108277376 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 40629 99 10 7 chr3 109759782 109762253 -108274905 - HERVK9 LTR ERVK -3513 4456 1 3107 140 18 8 chr3 109762253 109762759 -108274399 - MER9 LTR ERVK 0 511 1 317 346 38 73 chr3 109763782 109764097 -108273061 + L1MEd LINE L1 89 392 -5813 230 302 54 39 chr3 109764173 109764302 -108272856 + L1MEd LINE L1 522 652 -5553 22 56 0 0 chr3 109764662 109764698 -108272460 + AT_rich Low_complexity Low_complexity 1 36 0 1853 43 0 4 chr3 109764973 109765203 -108271955 + L1PA3 LINE L1 5924 6152 -3 453 291 129 43 chr3 109765205 109765701 -108271457 + L1MEd LINE L1 2116 2597 -3618 231 131 49 49 chr3 109765800 109765861 -108271297 + L1MEd LINE L1 2720 2780 -3435 475 307 106 34 chr3 109765862 109766048 -108271110 + L1MEd LINE L1 2782 2953 -3262 431 128 0 13 chr3 109766048 109766126 -108271032 - MADE1 DNA Mariner -3 77 1 475 307 106 34 chr3 109766126 109766375 -108270783 + L1MEd LINE L1 2953 3248 -2967 857 312 19 26 chr3 109766533 109766799 -108270359 + L2 LINE L2 2640 2903 -411 1309 149 60 0 chr3 109767985 109768220 -108268938 + L1PA16 LINE L1 5912 6160 -6 863 277 45 17 chr3 109768863 109769282 -108267876 - Zaphod DNA AcHobo -6 4025 3595 1029 252 132 106 chr3 109769298 109770233 -108266925 - Zaphod DNA AcHobo -3071 960 2 1016 269 11 13 chr3 109770484 109770756 -108266402 - MLT1D LTR MaLR 0 505 245 1122 214 8 26 chr3 109770779 109771046 -108266112 - L1MB5 LINE L1 -12 6162 5901 1414 149 27 9 chr3 109771046 109771428 -108265730 + MLT2A2 LTR ERVL 3 446 -7 1933 186 16 10 chr3 109771439 109771826 -108265332 - L1MB5 LINE L1 -284 5890 5502 2882 109 15 2 chr3 109771826 109772229 -108264929 + MLT2A2 LTR ERVL 1 408 -45 316 157 0 0 chr3 109772216 109772267 -108264891 - MLT2A2 LTR ERVL -44 409 359 * 394 91 0 0 chr3 109772272 109772327 -108264831 - MLT2A2 LTR ERVL -2 451 397 237 62 0 0 chr3 109772389 109772421 -108264737 + THE1-int LTR MaLR 1053 1084 -496 237 65 0 0 chr3 109772421 109772452 -108264706 + (TG)n Simple_repeat Simple_repeat 2 32 0 773 238 104 9 chr3 109772453 109772781 -108264377 - L1MB5 LINE L1 -870 5276 4918 1755 247 10 25 chr3 109772816 109773408 -108263750 - L1MB5 LINE L1 -1397 4749 4187 445 267 14 27 chr3 109773411 109773557 -108263601 - MLT1D LTR MaLR -361 144 1 22 0 0 0 chr3 109773643 109773665 -108263493 + AT_rich Low_complexity Low_complexity 1 22 0 2267 61 7 3 chr3 109773666 109773962 -108263196 + AluY SINE Alu 1 297 -14 745 219 22 0 chr3 109774284 109774467 -108262691 - MER53 DNA DNA -2 187 1 461 306 85 40 chr3 109774590 109774789 -108262369 - MER58C DNA MER1_type -6 209 2 704 350 52 25 chr3 109775090 109775533 -108261625 - LTR16B LTR ERVL -2 462 8 188 163 0 20 chr3 109775625 109775674 -108261484 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 1869 135 3 3 chr3 109776623 109776911 -108260247 - AluSx SINE Alu -16 296 9 259 338 23 12 chr3 109778388 109778505 -108258653 - MIR SINE MIR -56 152 39 40 79 0 0 chr3 109782417 109782506 -108254652 + AT_rich Low_complexity Low_complexity 1 89 0 362 208 0 14 chr3 109783221 109783293 -108253865 - MSTB LTR MaLR 0 426 356 2153 251 77 36 chr3 109783557 109784667 -108252491 + L1ME3A LINE L1 2663 3817 -2329 2819 247 40 3 chr3 109784803 109785780 -108251378 - L1M4 LINE L1 -716 5458 4445 228 366 20 52 chr3 109785797 109786141 -108251017 - L3 LINE CR1 -727 850 518 692 179 0 8 chr3 109786429 109786552 -108250606 + THE1C LTR MaLR 1 122 -253 509 281 0 7 chr3 109786718 109786871 -108250287 + MER9 LTR ERVK 267 418 -93 664 270 12 80 chr3 109786963 109787300 -108249858 + L1ME3A LINE L1 4097 4410 -1736 2626 183 36 44 chr3 109787324 109788013 -108249145 + L1MD2 LINE L1 5175 5853 -506 267 312 72 0 chr3 109788182 109788320 -108248838 + L1ME3A LINE L1 4450 4597 -1549 513 294 28 19 chr3 109788367 109788581 -108248577 + L1ME3A LINE L1 5565 5780 -390 700 255 80 40 chr3 109788585 109788910 -108248248 + L1ME3A LINE L1 5825 6162 -8 2886 173 45 3 chr3 109788927 109789015 -108248143 + L1MA9 LINE L1 5691 5774 -538 1460 224 3 3 chr3 109789015 109789318 -108247840 + AluJo SINE Alu 1 303 -9 204 67 0 0 chr3 109789320 109789350 -108247808 + (CA)n Simple_repeat Simple_repeat 1 30 0 2886 173 45 3 chr3 109789350 109789855 -108247303 + L1MA9 LINE L1 5774 6312 0 23 78 0 0 chr3 109789955 109790006 -108247152 + AT_rich Low_complexity Low_complexity 1 51 0 224 260 24 98 chr3 109790419 109790542 -108246616 + MIR SINE MIR 79 192 -70 1794 159 73 94 chr3 109790608 109791035 -108246123 - MER61B LTR ERV1 0 425 8 390 337 47 25 chr3 109792095 109792371 -108244787 - L1ME3A LINE L1 -220 5950 5669 1983 153 39 25 chr3 109792371 109792730 -108244428 - THE1B LTR MaLR 0 364 1 10348 126 14 2 chr3 109792730 109794291 -108242867 - THE1B-int LTR MaLR 0 1580 1 2003 125 57 28 chr3 109794291 109794643 -108242515 - THE1B LTR MaLR 0 364 3 375 23 0 0 chr3 109794665 109794709 -108242449 + (TA)n Simple_repeat Simple_repeat 2 45 0 1555 201 14 0 chr3 109794709 109794987 -108242171 - AluJb SINE Alu -30 282 1 319 342 41 25 chr3 109794999 109795195 -108241963 - L1 LINE L1 -3009 3137 2939 198 0 0 0 chr3 109795241 109795263 -108241895 + (TATG)n Simple_repeat Simple_repeat 2 23 0 1870 234 47 30 chr3 109795551 109796089 -108241069 - LTR38 LTR ERV1 -9 547 1 1537 275 66 44 chr3 109796138 109796480 -108240678 - L1M4 LINE L1 -1318 4828 4495 2196 70 0 7 chr3 109796480 109796778 -108240380 - L1PA4 LINE L1 -1 6154 5859 1537 275 66 44 chr3 109796778 109797465 -108239693 - L1M4 LINE L1 -1651 4495 3776 12551 132 12 3 chr3 109797470 109800271 -108236887 - L1PA8 LINE L1 -13 6159 3342 13286 90 6 1 chr3 109800387 109802140 -108235018 - HERVL-A2 LTR ERVL -1613 4041 2279 240 86 0 0 chr3 109802143 109802178 -108234980 + (TTG)n Simple_repeat Simple_repeat 1 35 0 22 0 0 0 chr3 109802200 109802222 -108234936 + AT_rich Low_complexity Low_complexity 1 22 0 7601 29 2 0 chr3 109802222 109803534 -108233624 - L1PA3 LINE L1 -3 6152 4840 1982 33 4 0 chr3 109803534 109803775 -108233383 + L1P LINE L1 1707 1948 -4198 8303 90 12 4 chr3 109803775 109805948 -108231210 - HERVL-A2 LTR ERVL -3390 2264 1 2388 109 123 5 chr3 109805948 109806353 -108230805 - MLT2A2 LTR ERVL 0 453 1 2552 120 75 5 chr3 109806353 109806769 -108230389 - LTR1B LTR ERV1 -381 445 1 1158 202 51 60 chr3 109807152 109807633 -108229525 - L1MB1 LINE L1 0 6205 5890 868 263 88 31 chr3 109807749 109808494 -108228664 - L1ME LINE L1 -4796 1284 501 346 305 80 26 chr3 109808510 109808661 -108228497 - L1ME LINE L1 -5770 300 142 1496 182 32 26 chr3 109808967 109809275 -108227883 - AluJb SINE Alu -2 310 1 782 244 10 10 chr3 109809850 109810055 -108227103 - L1MB1 LINE L1 0 6168 5964 5529 167 20 6 chr3 109810065 109811236 -108225922 - L1MA8 LINE L1 -3 6288 5100 242 267 10 0 chr3 109811948 109812049 -108225109 + (TA)n Simple_repeat Simple_repeat 1 102 0 3085 172 137 9 chr3 109812053 109812944 -108224214 + Tigger3b DNA MER2_type 7 1227 -4 201 314 43 0 chr3 109814399 109814469 -108222689 + MIR SINE MIR 81 153 -109 473 263 113 21 chr3 109814596 109814782 -108222376 - MIR SINE MIR -58 204 2 198 0 0 0 chr3 109815597 109815619 -108221539 + (TTTTTA)n Simple_repeat Simple_repeat 3 24 0 21 36 0 0 chr3 109818786 109818814 -108218344 + AT_rich Low_complexity Low_complexity 1 28 0 243 88 0 0 chr3 109818999 109819033 -108218125 + (TAAAAA)n Simple_repeat Simple_repeat 6 39 0 2116 111 7 19 chr3 109819662 109819797 -108217361 + AluSq SINE Alu 1 136 -177 2139 105 3 10 chr3 109819797 109820111 -108217047 + AluSx SINE Alu 1 312 0 2116 111 7 19 chr3 109820111 109820282 -108216876 + AluSq SINE Alu 136 303 -10 487 207 14 0 chr3 109820314 109820454 -108216704 + CT-rich Low_complexity Low_complexity 4 145 0 24009 134 13 6 chr3 109821254 109826049 -108211109 - L1PA8A LINE L1 0 6446 1624 2173 163 6 0 chr3 109826027 109826365 -108210793 - L1PA8A LINE L1 -5534 341 2 * 1759 167 4 0 chr3 109826389 109826670 -108210488 - AluSx SINE Alu -16 296 15 256 167 0 0 chr3 109826670 109826706 -108210452 - AluSx SINE Alu -264 36 1 214 450 0 8 chr3 109827239 109827370 -108209788 + MIR SINE MIR 21 150 -58 1140 237 101 31 chr3 109828743 109829198 -108207960 + Charlie4a DNA MER1_type 16 502 -6 21 0 0 0 chr3 109832094 109832115 -108205043 + AT_rich Low_complexity Low_complexity 1 21 0 2194 113 0 7 chr3 109832195 109832496 -108204662 + AluSq SINE Alu 1 299 -14 1525 207 0 20 chr3 109832728 109833027 -108204131 + AluJo SINE Alu 1 293 -19 330 196 0 0 chr3 109833212 109833268 -108203890 + L1PA16 LINE L1 6053 6108 -58 211 145 13 92 chr3 109833300 109833376 -108203782 + A-rich Low_complexity Low_complexity 2 71 0 1628 54 10 0 chr3 109833559 109833763 -108203395 - L1PA7 LINE L1 0 6154 5949 707 73 0 0 chr3 109833763 109833859 -108203299 + L1PA7 LINE L1 5854 5949 -205 2239 86 0 49 chr3 109833871 109834196 -108202962 - AluSg SINE Alu -1 309 1 676 267 109 5 chr3 109834295 109834497 -108202661 + MIR SINE MIR 2 224 -38 379 293 54 30 chr3 109834655 109834822 -108202336 - L2 LINE L2 -900 2414 2244 598 31 52 0 chr3 109835704 109835801 -108201357 + (TAGA)n Simple_repeat Simple_repeat 4 105 0 236 239 196 0 chr3 109840239 109840331 -108196827 - MIR SINE MIR -62 200 91 2010 120 7 32 chr3 109840512 109840820 -108196338 + AluSx SINE Alu 1 300 -12 2414 200 37 8 chr3 109841291 109841835 -108195323 + L1 LINE L1 4843 5403 -743 343 315 76 22 chr3 109842012 109842196 -108194962 + MER20B DNA MER1_type 4 197 -586 849 207 64 10 chr3 109844451 109844654 -108192504 + L1MA7 LINE L1 6052 6265 -26 5516 192 28 4 chr3 109845110 109847231 -108189927 - L1PA16 LINE L1 -1 6165 3997 212 0 0 35 chr3 109847517 109847546 -108189612 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1215 150 43 51 chr3 109847551 109847785 -108189373 - AluJo SINE Alu -38 274 43 334 241 84 35 chr3 109847832 109848319 -108188839 - L1MC3 LINE L1 -229 7615 7186 25 31 0 0 chr3 109848389 109848421 -108188737 + AT_rich Low_complexity Low_complexity 1 32 0 193 302 0 19 chr3 109848908 109848961 -108188197 - L2 LINE L2 -61 3211 3160 180 370 35 54 chr3 109849086 109849289 -108187869 - L2 LINE L2 -345 2969 2771 350 224 0 0 chr3 109849290 109849366 -108187792 + L1 LINE L1 4469 4544 -1602 1029 231 0 0 chr3 109849367 109849583 -108187575 + L1PA16 LINE L1 4850 5065 -1081 4336 169 65 5 chr3 109849592 109850524 -108186634 + L1PA16 LINE L1 5169 6156 -10 252 314 63 60 chr3 109851770 109852022 -108185136 + MLT1L LTR MaLR 3 255 -360 1726 155 86 0 chr3 109953496 109953774 -108083384 - AluJb SINE Alu -10 302 1 1035 203 38 9 chr3 109953774 109953986 -108083172 - MIR SINE MIR -39 223 6 380 307 0 0 chr3 109957754 109957933 -108079225 + (CCCTAA)n Simple_repeat Simple_repeat 1 179 0 28 29 0 0 chr3 109958363 109958398 -108078760 + AT_rich Low_complexity Low_complexity 1 35 0 30 45 0 0 chr3 109959868 109959912 -108077246 + AT_rich Low_complexity Low_complexity 1 44 0 27 49 0 0 chr3 109960511 109960552 -108076606 + AT_rich Low_complexity Low_complexity 1 41 0 217 163 0 20 chr3 109961385 109961434 -108075724 + GA-rich Low_complexity Low_complexity 1 48 0 21 36 0 0 chr3 109963400 109963428 -108073730 + AT_rich Low_complexity Low_complexity 1 28 0 32 57 0 0 chr3 109963614 109963667 -108073491 + AT_rich Low_complexity Low_complexity 1 53 0 420 287 0 6 chr3 109963917 109964084 -108073074 + (CCCTAA)n Simple_repeat Simple_repeat 3 168 0 4357 228 18 7 chr3 109965064 109965937 -108071221 - L1M1 LINE L1 -6525 1040 158 233 347 12 33 chr3 109966089 109966301 -108070857 - L1PA13 LINE L1 -5276 2298 2085 691 359 26 34 chr3 109966520 109966904 -108070254 - L1PA13 LINE L1 -6403 1171 791 2359 78 0 10 chr3 109967446 109967754 -108069404 - AluY SINE Alu -6 305 1 1129 30 0 8 chr3 109967758 109967891 -108069267 - AluY SINE Alu -179 132 1 1884 147 59 59 chr3 109967896 109968064 -108069094 - THE1B LTR MaLR -10 354 187 2065 95 67 0 chr3 109968064 109968348 -108068810 - AluSg SINE Alu -4 306 4 1884 147 59 59 chr3 109968348 109968533 -108068625 - THE1B LTR MaLR -176 188 1 42 48 0 0 chr3 109968579 109968642 -108068516 + AT_rich Low_complexity Low_complexity 1 63 0 950 231 100 39 chr3 109968800 109968916 -108068242 + AluJo SINE Alu 5 112 -200 249 33 0 0 chr3 109968916 109968946 -108068212 + (TAA)n Simple_repeat Simple_repeat 2 31 0 950 231 100 39 chr3 109968946 109969089 -108068069 + AluJo SINE Alu 112 280 -32 1115 66 11 17 chr3 109969091 109969272 -108067886 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 321 155 0 0 chr3 109969272 109969330 -108067828 + GA-rich Low_complexity Low_complexity 1 58 0 242 256 93 70 chr3 109969330 109969600 -108067558 - LTR37A LTR ERV1 -18 408 133 283 23 45 0 chr3 109970012 109970056 -108067102 + (TA)n Simple_repeat Simple_repeat 2 47 0 2415 79 3 3 chr3 109970335 109970640 -108066518 + AluSc SINE Alu 2 306 -3 481 286 48 20 chr3 109970732 109970984 -108066174 + L1MC5 LINE L1 7622 7880 -81 6342 55 3 7 chr3 109971343 109972267 -108064891 - L1PA6 LINE L1 -103 6051 5130 10694 143 58 38 chr3 109972277 109974020 -108063138 + L1 LINE L1 1449 3155 -4410 1133 163 79 9 chr3 109974020 109974235 -108062923 + MER30 DNA MER1_type 1 230 0 10694 143 58 38 chr3 109974235 109974397 -108062761 + L1 LINE L1 3155 3312 -4253 1449 123 157 4 chr3 109974397 109974658 -108062500 + AluY SINE Alu 1 301 0 10694 143 58 38 chr3 109974658 109974836 -108062322 + L1 LINE L1 3312 3575 -3990 459 173 134 0 chr3 109974832 109974967 -108062191 + L1 LINE L1 6575 6752 -817 * 2278 121 22 19 chr3 109978227 109978590 -108058568 + THE1B LTR MaLR 1 364 0 302 346 96 31 chr3 109978740 109979069 -108058089 - L2 LINE L2 -223 3049 2642 192 218 18 0 chr3 109979082 109979137 -108058021 - L2 LINE L2 -911 2403 2348 616 257 100 60 chr3 109979341 109979556 -108057602 - MLT2C1 LTR ERVL -65 332 98 2103 175 43 24 chr3 109979556 109979979 -108057179 + MSTB1 LTR MaLR 1 431 -1 616 257 100 60 chr3 109979979 109980082 -108057076 - MLT2C1 LTR ERVL -299 98 1 310 277 188 12 chr3 109980396 109980652 -108056506 + L1ME4a LINE L1 5562 5862 -259 1914 114 0 60 chr3 109981443 109981779 -108055379 - AluSc SINE Alu 0 318 1 561 243 76 0 chr3 109981903 109982047 -108055111 - MER3 DNA MER1_type -53 156 2 321 273 35 131 chr3 109982399 109982681 -108054477 + LTR33A LTR ERVL 269 523 0 263 248 8 0 chr3 109983568 109983689 -108053469 + CT-rich Low_complexity Low_complexity 2 123 0 190 301 14 41 chr3 109984012 109984085 -108053073 + L3 LINE CR1 1506 1576 -1 213 411 68 0 chr3 109984179 109984342 -108052816 + MIR SINE MIR 2 175 -87 189 258 15 45 chr3 109984405 109984471 -108052687 + MIR SINE MIR 198 261 -1 21 0 0 0 chr3 109984648 109984669 -108052489 + AT_rich Low_complexity Low_complexity 1 21 0 726 189 16 0 chr3 109984830 109984957 -108052201 + Tigger7 DNA MER2_type 1 129 -576 404 276 109 16 chr3 109985044 109985236 -108051922 + MLT1H1 LTR MaLR 346 555 0 253 309 24 12 chr3 109985508 109985592 -108051566 + HAL1 LINE L1 1 85 -2422 6278 61 6 67 chr3 109985906 109987109 -108050049 + L1PA7 LINE L1 4637 5761 -393 1513 113 0 0 chr3 109987109 109987322 -108049836 + AluY SINE Alu 99 311 0 6278 61 6 67 chr3 109987322 109987691 -108049467 + L1PA7 LINE L1 5761 6151 -3 189 328 0 0 chr3 109987691 109987755 -108049403 - L2 LINE L2 -1066 2248 2185 32 81 0 0 chr3 109987829 109987903 -108049255 + AT_rich Low_complexity Low_complexity 1 74 0 1906 160 41 5 chr3 109987909 109988297 -108048861 - L1MA4 LINE L1 -11 6289 5888 1662 185 10 13 chr3 109989015 109989328 -108047830 + AluSx SINE Alu 1 312 0 23 68 0 0 chr3 109989603 109989647 -108047511 + AT_rich Low_complexity Low_complexity 1 44 0 197 367 136 12 chr3 109989814 109989983 -108047175 - MIR3 SINE MIR -11 197 8 414 289 33 50 chr3 109991383 109991563 -108045595 + LTR16A LTR ERVL 172 348 -102 225 94 0 0 chr3 109992512 109992544 -108044614 + (GA)n Simple_repeat Simple_repeat 1 32 0 255 31 0 0 chr3 109992754 109992786 -108044372 + (T)n Simple_repeat Simple_repeat 1 32 0 6601 167 38 7 chr3 109993706 109994919 -108042239 - HSMAR2 DNA Mariner -2 1300 50 1932 144 0 0 chr3 109995385 109995684 -108041474 + AluSx SINE Alu 11 309 -3 649 290 71 15 chr3 109996167 109996560 -108040598 - HAL1b LINE L1 -546 802 388 2234 48 65 20 chr3 109996573 109996866 -108040292 - AluY SINE Alu -5 306 1 369 343 123 17 chr3 109997317 109997617 -108039541 - L2 LINE L2 -514 2800 2469 331 358 57 23 chr3 109997769 109997945 -108039213 - L2 LINE L2 -1166 2148 1967 422 318 79 19 chr3 109998395 109998609 -108038549 + LTR16C LTR ERVL 265 491 0 24 53 0 0 chr3 109998633 109998671 -108038487 + AT_rich Low_complexity Low_complexity 1 38 0 31 0 0 0 chr3 109998950 109998981 -108038177 + AT_rich Low_complexity Low_complexity 1 31 0 1513 247 60 45 chr3 109999471 109999936 -108037222 + L1M3 LINE L1 4 475 -5909 1618 249 43 37 chr3 109999937 110000632 -108036526 + L1M3 LINE L1 2777 3475 -2907 40724 67 1 4 chr3 110000635 110006783 -108030375 - L1PA5 LINE L1 0 6154 22 6089 253 60 19 chr3 110006782 110006894 -108030264 + L1M3 LINE L1 3458 3564 -2818 * 213 39 0 0 chr3 110006894 110006920 -108030238 + (TC)n Simple_repeat Simple_repeat 1 26 0 180 0 0 0 chr3 110006921 110006941 -108030217 + (TCTA)n Simple_repeat Simple_repeat 2 21 0 6089 253 60 19 chr3 110006941 110008246 -108028912 + L1M3 LINE L1 3564 4991 -1391 1995 151 0 6 chr3 110008246 110008558 -108028600 - AluSx SINE Alu 0 312 3 6089 253 60 19 chr3 110008558 110009186 -108027972 + L1M3 LINE L1 4991 5591 -791 1806 199 44 24 chr3 110009408 110009819 -108027339 + L1M3 LINE L1 5605 6023 -384 207 0 0 0 chr3 110009822 110009845 -108027313 + (TA)n Simple_repeat Simple_repeat 1 23 0 180 0 0 0 chr3 110009886 110009906 -108027252 + (TA)n Simple_repeat Simple_repeat 2 21 0 249 162 0 108 chr3 110009906 110009972 -108027186 + L1MB3 LINE L1 5749 5808 -504 313 141 42 0 chr3 110009972 110010043 -108027115 - L1MA7 LINE L1 -2 6289 6216 2056 163 11 11 chr3 110010043 110010417 -108026741 - L1MA5 LINE L1 -131 6169 5796 1537 191 67 14 chr3 110010418 110010789 -108026369 + L1MB3 LINE L1 5791 6181 -2 28 79 0 0 chr3 110010789 110010852 -108026306 + AT_rich Low_complexity Low_complexity 1 63 0 1031 208 25 25 chr3 110011024 110011260 -108025898 + MER46A DNA MER2_type 1 236 0 32 57 0 0 chr3 110011692 110011745 -108025413 + AT_rich Low_complexity Low_complexity 1 53 0 180 135 0 0 chr3 110012079 110012116 -108025042 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 2420 62 0 34 chr3 110013119 110013441 -108023717 - AluY SINE Alu 0 311 1 26 0 0 0 chr3 110015302 110015328 -108021830 + AT_rich Low_complexity Low_complexity 1 26 0 200 132 26 0 chr3 110015675 110015713 -108021445 + A-rich Low_complexity Low_complexity 4 42 0 1011 130 0 0 chr3 110017010 110017179 -108019979 + (GGAA)n Simple_repeat Simple_repeat 2 170 0 265 232 122 147 chr3 110019180 110019499 -108017659 + LTR41 LTR ERVL 1 311 -462 818 310 114 40 chr3 110019528 110019931 -108017227 + LTR41 LTR ERVL 239 671 -102 1735 202 142 12 chr3 110019950 110020351 -108016807 + MLT2C2 LTR ERVL 10 462 -2 383 154 0 0 chr3 110020394 110020459 -108016699 + LTR41 LTR ERVL 700 764 -9 456 322 52 85 chr3 110021020 110021408 -108015750 + L2 LINE L2 2423 2797 -517 367 347 16 74 chr3 110021429 110021671 -108015487 - MIR SINE MIR -5 257 30 566 355 58 30 chr3 110021741 110022141 -108015017 + L2 LINE L2 2851 3261 -52 381 294 46 30 chr3 110022703 110022900 -108014258 - L2 LINE L2 -2521 793 594 2246 92 0 16 chr3 110023675 110023989 -108013169 + AluSc SINE Alu 1 309 0 25 65 0 0 chr3 110024520 110024566 -108012592 + AT_rich Low_complexity Low_complexity 1 46 0 22 88 0 0 chr3 110024619 110024676 -108012482 + AT_rich Low_complexity Low_complexity 1 57 0 192 311 0 66 chr3 110025322 110025444 -108011714 + MIR SINE MIR 83 196 -66 315 240 50 33 chr3 110025700 110025821 -108011337 + L1ME1 LINE L1 24 146 -6277 2234 277 52 18 chr3 110025846 110027246 -108009912 + L1ME1 LINE L1 5494 6948 -13 21 36 0 0 chr3 110027247 110027275 -108009883 + AT_rich Low_complexity Low_complexity 1 28 0 224 197 16 16 chr3 110027704 110027765 -108009393 + A-rich Low_complexity Low_complexity 2 62 0 210 233 0 0 chr3 110028154 110028214 -108008944 + (CA)n Simple_repeat Simple_repeat 1 60 0 4428 72 5 34 chr3 110028838 110029904 -108007254 - MER11A LTR ERVK 0 1266 1 1945 117 0 0 chr3 110030284 110030549 -108006609 - AluSc SINE Alu -11 298 34 216 270 71 87 chr3 110030553 110030679 -108006479 + MER5B DNA MER1_type 40 163 -15 1820 157 3 3 chr3 110032578 110032877 -108004281 - AluSx SINE Alu -13 299 1 371 259 54 60 chr3 110032901 110033067 -108004091 + MIR SINE MIR 88 252 -10 204 97 0 0 chr3 110033442 110033473 -108003685 + (TG)n Simple_repeat Simple_repeat 2 32 0 2867 141 22 0 chr3 110034967 110035415 -108001743 - LTR24 LTR ERV1 0 467 10 209 226 0 19 chr3 110035780 110035833 -108001325 + T-rich Low_complexity Low_complexity 4 55 0 219 183 0 42 chr3 110035985 110036056 -108001102 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 3544 170 26 39 chr3 110036264 110036635 -108000523 + MER72 LTR ERV1 10 369 -353 2316 58 34 0 chr3 110036635 110036930 -108000228 - AluY SINE Alu -6 305 1 3544 170 26 39 chr3 110036930 110037276 -107999882 + MER72 LTR ERV1 369 718 -4 30 0 0 0 chr3 110037470 110037500 -107999658 + AT_rich Low_complexity Low_complexity 1 30 0 303 146 344 10 chr3 110037638 110037734 -107999424 + MER39 LTR ERV1 6 133 -574 * 2121 162 74 12 chr3 110037702 110037838 -107999320 + MER39 LTR ERV1 250 376 -331 1571 155 32 29 chr3 110037838 110038179 -107998979 + L1MA4 LINE L1 5954 6295 -5 2121 162 74 12 chr3 110038179 110038473 -107998685 + MER39 LTR ERV1 376 707 0 186 256 0 0 chr3 110038523 110038562 -107998596 + L2 LINE L2 3257 3295 -18 23 68 0 0 chr3 110038840 110038884 -107998274 + AT_rich Low_complexity Low_complexity 1 44 0 25 65 0 0 chr3 110038918 110038964 -107998194 + AT_rich Low_complexity Low_complexity 1 46 0 11208 211 42 20 chr3 110039461 110044815 -107992343 + L1PA16 LINE L1 1364 6860 -9 2469 155 45 8 chr3 110044828 110045338 -107991820 + L1MA6 LINE L1 5769 6297 -3 337 138 101 116 chr3 110045346 110045484 -107991674 + Charlie5 DNA MER1_type 2442 2577 -35 343 273 27 80 chr3 110046177 110046364 -107990794 + MER69A DNA AcHobo 1 177 0 436 79 11 112 chr3 110046513 110046602 -107990556 - MADE1 DNA Mariner 0 80 1 198 0 0 0 chr3 110046636 110046658 -107990500 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 27 0 0 0 chr3 110047426 110047453 -107989705 + AT_rich Low_complexity Low_complexity 1 27 0 346 351 96 17 chr3 110048683 110048908 -107988250 - LTR16A LTR ERVL -8 442 179 1102 243 85 13 chr3 110048908 110049225 -107987933 + MER58B DNA MER1_type 1 340 -1 346 351 96 17 chr3 110049225 110049344 -107987814 - LTR16A LTR ERVL -271 179 71 1187 15 0 0 chr3 110050658 110050795 -107986363 + L1PA2 LINE L1 6019 6155 0 410 236 67 107 chr3 110051070 110051287 -107985871 - L2 LINE L2 -322 2991 2782 993 310 4 4 chr3 110051288 110051562 -107985596 - LTR40a LTR ERVL 0 519 246 325 122 0 0 chr3 110051569 110051618 -107985540 - MLT2B1 LTR ERVL -8 512 464 210 212 30 30 chr3 110051638 110051737 -107985421 + (TA)n Simple_repeat Simple_repeat 1 99 0 1550 186 169 45 chr3 110051751 110052176 -107984982 - MLT2B1 LTR ERVL -40 480 3 468 261 7 36 chr3 110052196 110052334 -107984824 - LTR40a LTR ERVL -290 229 96 1245 305 128 16 chr3 110052362 110052847 -107984311 - L2 LINE L2 -528 2786 2248 522 83 0 0 chr3 110052847 110052919 -107984239 + (CA)n Simple_repeat Simple_repeat 2 73 0 6163 49 12 3 chr3 110053396 110054128 -107983030 - SVA Other Other -2 1384 646 2444 59 3 3 chr3 110054165 110054470 -107982688 - AluY SINE Alu -4 307 3 254 318 125 42 chr3 110055290 110055482 -107981676 - L2 LINE L2 -448 2866 2659 857 170 0 36 chr3 110055614 110055779 -107981379 + AluJb SINE Alu 1 159 -153 270 0 0 0 chr3 110055809 110055839 -107981319 + (A)n Simple_repeat Simple_repeat 1 30 0 334 122 24 37 chr3 110056344 110056426 -107980732 - L1MD3 LINE L1 0 7995 7915 242 267 192 47 chr3 110056440 110056612 -107980546 + L2 LINE L2 3116 3312 -1 219 299 15 0 chr3 110056614 110056681 -107980477 - L2 LINE L2 -1062 2252 2185 1664 156 7 36 chr3 110056684 110056985 -107980173 - MER4A LTR ERV1 0 664 373 346 252 0 39 chr3 110057360 110057515 -107979643 + AluJb SINE Alu 11 159 -143 315 146 0 0 chr3 110057546 110057601 -107979557 + (A)n Simple_repeat Simple_repeat 1 55 0 334 122 24 37 chr3 110058080 110058162 -107978996 - L1MD3 LINE L1 0 7995 7915 242 267 192 47 chr3 110058176 110058348 -107978810 + L2 LINE L2 3116 3312 -1 219 299 15 0 chr3 110058350 110058417 -107978741 - L2 LINE L2 -1062 2252 2185 1649 153 8 33 chr3 110058420 110058774 -107978384 - MER4A LTR ERV1 0 664 261 533 120 10 30 chr3 110058774 110058874 -107978284 - MER4A LTR ERV1 -566 98 1 224 312 145 39 chr3 110058946 110059101 -107978057 - L2 LINE L2 -1241 2073 1936 212 0 36 0 chr3 110059101 110059129 -107978029 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 224 312 145 39 chr3 110059129 110059284 -107977874 - L2 LINE L2 -1378 1936 1730 23 0 0 0 chr3 110059534 110059557 -107977601 + AT_rich Low_complexity Low_complexity 1 23 0 2196 116 12 79 chr3 110059577 110059981 -107977177 + MER51B LTR ERV1 1 377 0 264 77 0 0 chr3 110060287 110060326 -107976832 + (CA)n Simple_repeat Simple_repeat 2 40 0 302 305 29 9 chr3 110060569 110060674 -107976484 + MER94 DNA DNA 6 112 -22 202 226 0 16 chr3 110060865 110060927 -107976231 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 200 297 0 0 chr3 110061145 110061209 -107975949 + A-rich Low_complexity Low_complexity 1 64 0 22 0 0 0 chr3 110061484 110061506 -107975652 + AT_rich Low_complexity Low_complexity 1 22 0 309 51 0 0 chr3 110063286 110063325 -107973833 + (T)n Simple_repeat Simple_repeat 1 39 0 236 317 24 0 chr3 110064811 110064893 -107972265 + MIR SINE MIR 178 261 -1 2053 111 47 3 chr3 110065135 110065433 -107971725 - AluSx SINE Alu -1 311 1 754 320 53 64 chr3 110065511 110066080 -107971078 - L2 LINE L2 -5 3308 2747 9753 105 9 1 chr3 110066706 110068908 -107968250 - L1PA8 LINE L1 -1 6171 3943 304 292 62 0 chr3 110069297 110069393 -107967765 - L2 LINE L2 -59 3254 3153 241 269 92 50 chr3 110069533 110069652 -107967506 - LTR16A1 LTR ERVL -2 455 332 247 203 31 47 chr3 110070161 110070225 -107966933 - MIR3 SINE MIR -48 160 98 343 335 118 6 chr3 110071967 110072128 -107965030 - L2 LINE L2 -12 3301 3123 351 96 0 0 chr3 110072240 110072292 -107964866 + (TG)n Simple_repeat Simple_repeat 2 53 0 926 255 0 72 chr3 110072493 110072728 -107964430 - MER58A DNA MER1_type -5 219 2 423 257 50 45 chr3 110072808 110073010 -107964148 - MER115 DNA AcHobo -31 662 460 699 362 16 8 chr3 110073066 110073320 -107963838 - MER115 DNA AcHobo -425 268 13 2420 187 6 25 chr3 110073386 110073862 -107963296 + MLT1C LTR MaLR 1 467 0 215 303 18 97 chr3 110073992 110074157 -107963001 + L2 LINE L2 3161 3312 -1 275 186 17 17 chr3 110074157 110074216 -107962942 + GA-rich Low_complexity Low_complexity 4 62 0 490 295 83 78 chr3 110074541 110075045 -107962113 - L2 LINE L2 -1 3312 2792 184 331 25 50 chr3 110075083 110075204 -107961954 - MIR3 SINE MIR -10 198 81 2184 94 10 3 chr3 110075209 110075497 -107961661 + AluSp SINE Alu 3 292 -21 757 262 5 5 chr3 110075585 110075772 -107961386 - MER5A DNA MER1_type 0 189 3 230 310 20 30 chr3 110076704 110076804 -107960354 + L2 LINE L2 2874 2972 -342 317 270 118 33 chr3 110076872 110077024 -107960134 - MLT1H LTR MaLR -383 166 2 1921 197 19 16 chr3 110077024 110077400 -107959758 - MSTD LTR MaLR 0 396 20 239 313 99 57 chr3 110077443 110077654 -107959504 - MSTD-int LTR MaLR -1 1370 1151 198 0 0 0 chr3 110077758 110077780 -107959378 + (TA)n Simple_repeat Simple_repeat 2 23 0 4862 92 27 0 chr3 110078505 110079208 -107957950 - LTR30 LTR ERV1 0 722 1 419 313 6 24 chr3 110079257 110079423 -107957735 - MLT1H LTR MaLR -308 241 79 1123 180 14 0 chr3 110079642 110079864 -107957294 - L1MA9 LINE L1 0 6312 6088 1251 178 174 3 chr3 110080063 110080350 -107956808 - L1PB3 LINE L1 -7 6147 5812 198 118 0 0 chr3 110080386 110080420 -107956738 + (TG)n Simple_repeat Simple_repeat 1 34 0 23 54 0 0 chr3 110080568 110080605 -107956553 + AT_rich Low_complexity Low_complexity 1 37 0 43156 30 21 1 chr3 110080756 110086788 -107950370 - L1HS LINE L1 0 6155 1 1889 177 22 30 chr3 110087015 110087383 -107949775 + MLT1A1 LTR MaLR 1 365 0 2135 120 27 0 chr3 110087389 110087688 -107949470 - AluSp SINE Alu -6 307 1 4936 141 156 35 chr3 110087918 110089017 -107948141 + MER11B LTR ERVK 1 1232 -4 23 0 0 0 chr3 110089687 110089710 -107947448 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr3 110090721 110090746 -107946412 + (TG)n Simple_repeat Simple_repeat 1 25 0 297 0 0 0 chr3 110091829 110091862 -107945296 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 337 250 71 0 chr3 110091862 110091946 -107945212 + L1MC4 LINE L1 6614 6703 -1339 * 360 244 67 0 chr3 110091872 110091962 -107945196 - L1MC4 LINE L1 -1339 6703 6608 758 265 117 121 chr3 110091989 110093042 -107944116 - L2 LINE L2 -31 3282 2200 342 284 46 9 chr3 110093344 110093453 -107943705 + MLT1J LTR MaLR 350 462 -49 853 288 69 9 chr3 110093508 110093841 -107943317 - L2 LINE L2 -1103 2211 1859 232 284 10 20 chr3 110093870 110093880 -107943278 + (TA)n Simple_repeat Simple_repeat 2 11 -91 198 0 0 0 chr3 110093880 110093902 -107943256 + (TG)n Simple_repeat Simple_repeat 1 22 0 232 284 10 20 chr3 110093902 110093993 -107943165 + (TA)n Simple_repeat Simple_repeat 11 102 0 371 241 51 44 chr3 110094209 110094367 -107942791 - L1ME4a LINE L1 -197 5924 5766 25 31 0 0 chr3 110094367 110094399 -107942759 + AT_rich Low_complexity Low_complexity 1 32 0 210 128 0 0 chr3 110095324 110095363 -107941795 + (GA)n Simple_repeat Simple_repeat 2 40 0 24 67 0 0 chr3 110095789 110095834 -107941324 + AT_rich Low_complexity Low_complexity 1 45 0 25 31 0 0 chr3 110095948 110095980 -107941178 + AT_rich Low_complexity Low_complexity 1 32 0 315 0 0 0 chr3 110096066 110096101 -107941057 + (TA)n Simple_repeat Simple_repeat 1 35 0 375 60 0 0 chr3 110096472 110096522 -107940636 + (CA)n Simple_repeat Simple_repeat 2 51 0 182 262 155 12 chr3 110097577 110097661 -107939497 - MIR SINE MIR -13 249 154 288 284 15 0 chr3 110097762 110097864 -107939294 - MIR SINE MIR -65 143 37 232 273 18 0 chr3 110097990 110098045 -107939113 + L2 LINE L2 3250 3305 -8 23 33 0 0 chr3 110098194 110098224 -107938934 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr3 110098582 110098614 -107938544 + AT_rich Low_complexity Low_complexity 1 32 0 297 281 39 47 chr3 110100650 110100778 -107936380 - MIR SINE MIR -110 152 26 239 246 79 44 chr3 110103676 110103790 -107933368 + L2 LINE L2 3114 3231 -82 194 423 27 0 chr3 110104471 110104582 -107932576 - L2 LINE L2 -9 3263 3150 271 265 0 49 chr3 110104618 110104720 -107932438 + CT-rich Low_complexity Low_complexity 5 101 0 27 0 0 0 chr3 110104887 110104914 -107932244 + AT_rich Low_complexity Low_complexity 1 27 0 198 191 0 0 chr3 110104980 110105022 -107932136 + (TA)n Simple_repeat Simple_repeat 2 43 0 24 0 0 0 chr3 110105768 110105792 -107931366 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr3 110106293 110106324 -107930834 + AT_rich Low_complexity Low_complexity 1 31 0 1210 105 0 6 chr3 110106426 110106597 -107930561 + AluSg/x SINE Alu 132 301 -11 694 178 0 0 chr3 110106707 110106836 -107930322 - AluSg/x SINE Alu -5 307 179 21 0 0 0 chr3 110106983 110107004 -107930154 + AT_rich Low_complexity Low_complexity 1 21 0 1890 118 30 10 chr3 110107004 110107309 -107929849 - AluSx SINE Alu -1 311 1 724 284 18 22 chr3 110107348 110107577 -107929581 - MIR SINE MIR -17 245 18 301 364 73 23 chr3 110107827 110108047 -107929111 - MIR3 SINE MIR -3 259 29 919 287 98 59 chr3 110108779 110109256 -107927902 + MLT1H LTR MaLR 1 496 -53 189 0 0 0 chr3 110109665 110109686 -107927472 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1910 129 0 11 chr3 110111025 110111304 -107925854 + AluSx SINE Alu 1 276 -36 381 43 0 0 chr3 110111306 110111353 -107925805 + (TAAA)n Simple_repeat Simple_repeat 4 50 0 296 353 129 4 chr3 110111368 110111623 -107925535 + L3 LINE CR1 1227 1513 -64 362 39 19 0 chr3 110111861 110111913 -107925245 + (TG)n Simple_repeat Simple_repeat 2 54 0 21 71 0 0 chr3 110112554 110112596 -107924562 + AT_rich Low_complexity Low_complexity 1 42 0 37 0 0 0 chr3 110112725 110112762 -107924396 + AT_rich Low_complexity Low_complexity 1 37 0 237 326 82 15 chr3 110112823 110112958 -107924200 + MIR3 SINE MIR 42 185 -23 459 281 38 35 chr3 110113375 110113692 -107923466 - L1MC5 LINE L1 -35 7926 7609 4286 44 0 4 chr3 110114290 110114817 -107922341 - L1PA5 LINE L1 -5 6149 5625 402 305 93 45 chr3 110114916 110115642 -107921516 - L1MEc LINE L1 -2663 3552 2745 230 221 91 0 chr3 110116052 110116129 -107921029 - L1MEc LINE L1 -4092 2304 2221 360 345 74 13 chr3 110116662 110116891 -107920267 - HAL1 LINE L1 -862 1645 1403 922 227 50 15 chr3 110116918 110117354 -107919804 - L1MC/D LINE L1 -743 5403 4992 2783 101 37 16 chr3 110118720 110119155 -107918003 - MLT2A1 LTR ERVL 0 444 1 41728 87 10 9 chr3 110119155 110124801 -107912357 - HERVL-A1-A1 LTR ERVL 0 5654 1 3066 74 35 7 chr3 110124801 110125233 -107911925 - MLT2A1 LTR ERVL 0 444 1 23 0 0 0 chr3 110125781 110125804 -107911354 + AT_rich Low_complexity Low_complexity 1 23 0 4791 284 68 37 chr3 110126704 110128618 -107908540 + L1M2b LINE L1 1 1973 -5236 2741 219 5 0 chr3 110128619 110129221 -107907937 - L1 LINE L1 -1437 4709 4105 1853 231 14 33 chr3 110129215 110129705 -107907453 + L1P LINE L1 4744 5224 -922 * 10565 199 39 16 chr3 110129727 110131733 -107905425 + L1M2b LINE L1 3003 4962 -2246 2284 151 5 0 chr3 110131733 110132104 -107905054 + THE1C LTR MaLR 3 375 0 10565 199 39 16 chr3 110132104 110132796 -107904362 + L1M2b LINE L1 4962 5771 -1437 261 0 0 0 chr3 110132796 110132825 -107904333 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 10565 199 39 16 chr3 110132825 110132873 -107904285 + L1M2b LINE L1 5771 5816 -1392 2005 167 68 31 chr3 110132873 110133256 -107903902 + MSTA LTR MaLR 1 397 -31 347 106 4 12 chr3 110133307 110133378 -107903780 - L1MA7 LINE L1 -94 6197 6145 507 138 11 0 chr3 110133381 110133475 -107903683 + L1MA7 LINE L1 6197 6291 0 234 259 0 0 chr3 110133544 110133598 -107903560 + (TATATG)n Simple_repeat Simple_repeat 2 55 0 953 248 90 70 chr3 110133698 110134153 -107903005 - MLT2C2 LTR ERVL 0 464 1 238 247 39 0 chr3 110134260 110134337 -107902821 + MIR SINE MIR 114 193 -69 2042 133 0 0 chr3 110134338 110134666 -107902492 - AluSx SINE Alu 0 328 1 24 0 0 0 chr3 110134673 110134697 -107902461 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 110134868 110134889 -107902269 + AT_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chr3 110134990 110135027 -107902131 + AT_rich Low_complexity Low_complexity 1 37 0 22 80 0 0 chr3 110135048 110135098 -107902060 + AT_rich Low_complexity Low_complexity 1 50 0 545 273 66 26 chr3 110135562 110135789 -107901369 - MIR SINE MIR -24 238 3 429 300 7 93 chr3 110135937 110136207 -107900951 + L1ME LINE L1 5412 5658 -506 481 224 0 0 chr3 110136908 110136993 -107900165 - Tigger7 DNA MER2_type 0 2487 2403 * 2525 180 74 18 chr3 110136992 110137493 -107899665 - Tigger7 DNA MER2_type -1958 529 1 267 31 0 0 chr3 110138590 110138622 -107898536 + (CA)n Simple_repeat Simple_repeat 1 32 0 23 0 0 0 chr3 110139734 110139757 -107897401 + AT_rich Low_complexity Low_complexity 1 23 0 315 281 0 0 chr3 110139953 110140017 -107897141 + MER21B LTR ERV1 26 89 -774 * 1822 238 28 36 chr3 110140016 110140780 -107896378 + MER21B LTR ERV1 46 840 -23 760 272 65 9 chr3 110140916 110141374 -107895784 + L1ME3 LINE L1 5596 6131 -31 21 0 0 0 chr3 110142066 110142087 -107895071 + AT_rich Low_complexity Low_complexity 1 21 0 637 125 10 10 chr3 110142125 110142229 -107894929 - MLT1A1 LTR MaLR -254 111 8 2394 115 16 16 chr3 110142242 110142617 -107894541 - THE1C LTR MaLR 0 375 1 9023 156 19 15 chr3 110142617 110143798 -107893360 - THE1C-int LTR MaLR 0 1580 389 3921 28 0 72 chr3 110143798 110144328 -107892830 + L1PA5 LINE L1 5658 6149 -5 9023 156 19 15 chr3 110144328 110144701 -107892457 - THE1C-int LTR MaLR -1191 389 19 1450 106 78 5 chr3 110144702 110144920 -107892238 - THE1C LTR MaLR -139 236 3 21 36 0 0 chr3 110145215 110145243 -107891915 + AT_rich Low_complexity Low_complexity 1 28 0 1837 163 49 85 chr3 110145383 110145454 -107891704 - MSTB1 LTR MaLR 0 432 360 2091 137 0 6 chr3 110145454 110145769 -107891389 + AluSq SINE Alu 1 313 0 1099 98 0 16 chr3 110145779 110145962 -107891196 + (GAAAA)n Simple_repeat Simple_repeat 1 180 0 1837 163 49 85 chr3 110145962 110146327 -107890831 - MSTB1 LTR MaLR -81 351 1 408 300 44 25 chr3 110147234 110147394 -107889764 - MER69A DNA AcHobo 0 177 15 183 42 0 0 chr3 110147932 110147956 -107889202 + (CAA)n Simple_repeat Simple_repeat 2 25 0 11974 215 48 19 chr3 110148190 110152381 -107884777 - L1MA4 LINE L1 -359 6123 1705 234 0 0 0 chr3 110152381 110152407 -107884751 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 11974 215 48 19 chr3 110152407 110154151 -107883007 - L1MA4 LINE L1 -4777 1705 12 774 237 5 24 chr3 110154653 110154860 -107882298 - L1 LINE L1 -1954 4192 3990 189 0 0 0 chr3 110155246 110155267 -107881891 + (TG)n Simple_repeat Simple_repeat 2 22 0 2160 124 62 3 chr3 110155314 110155668 -107881490 + THE1C LTR MaLR 1 375 0 8717 146 25 64 chr3 110155668 110157306 -107879852 + THE1C-int LTR MaLR 1 1574 -6 2424 114 25 8 chr3 110157310 110157677 -107879481 + THE1C LTR MaLR 3 375 0 557 241 7 7 chr3 110157683 110157820 -107879338 + L1MA9 LINE L1 3991 4127 -2019 2103 259 27 6 chr3 110157830 110158468 -107878690 - L1 LINE L1 -2174 3972 3322 * 4646 213 16 22 chr3 110158458 110160027 -107877131 + L1MA9 LINE L1 4198 5752 -560 243 206 14 27 chr3 110160119 110160192 -107876966 + L1MA9 LINE L1 5777 5848 -464 487 175 0 0 chr3 110160354 110160434 -107876724 + AluS SINE Alu 224 303 -7 769 152 269 18 chr3 110160645 110160816 -107876342 + AluJb SINE Alu 81 294 -18 1247 186 40 8 chr3 110161617 110161869 -107875289 - AluJb SINE Alu -52 260 1 180 0 0 0 chr3 110162596 110162616 -107874542 + (CA)n Simple_repeat Simple_repeat 1 20 0 414 217 11 0 chr3 110162669 110162761 -107874397 + L1MA9 LINE L1 6182 6274 -38 29 28 0 0 chr3 110163929 110163965 -107873193 + AT_rich Low_complexity Low_complexity 1 36 0 293 336 93 0 chr3 110165213 110165320 -107871838 - MER5A DNA MER1_type -5 184 68 632 296 140 37 chr3 110166567 110166918 -107870240 + L2 LINE L2 104 490 -2824 424 292 72 25 chr3 110166919 110167155 -107870003 + L2 LINE L2 1858 2104 -1210 360 293 126 37 chr3 110167192 110167383 -107869775 + L2 LINE L2 2452 2659 -655 21 71 0 0 chr3 110168353 110168395 -107868763 + AT_rich Low_complexity Low_complexity 1 42 0 275 0 29 0 chr3 110169641 110169676 -107867482 + (TA)n Simple_repeat Simple_repeat 1 36 0 25 51 0 0 chr3 110169974 110170013 -107867145 + AT_rich Low_complexity Low_complexity 1 39 0 186 103 0 0 chr3 110170256 110170285 -107866873 + (TTAA)n Simple_repeat Simple_repeat 4 32 0 333 345 48 40 chr3 110171985 110172387 -107864771 - L2 LINE L2 -202 3070 2660 2032 140 3 0 chr3 110173928 110174228 -107862930 - AluSp SINE Alu -12 301 1 1101 244 76 19 chr3 110174278 110174647 -107862511 - MLT1B LTR MaLR 0 390 1 313 359 22 22 chr3 110176653 110176834 -107860324 - MIR SINE MIR -45 217 37 25 0 0 0 chr3 110176855 110176880 -107860278 + AT_rich Low_complexity Low_complexity 1 25 0 205 149 21 21 chr3 110177197 110177244 -107859914 + A-rich Low_complexity Low_complexity 3 49 0 381 274 8 24 chr3 110178343 110178467 -107858691 + GA-rich Low_complexity Low_complexity 3 124 0 298 162 0 18 chr3 110178494 110178574 -107858584 + L1MEc LINE L1 1378 1419 -5440 28 48 0 0 chr3 110178934 110178976 -107858182 + AT_rich Low_complexity Low_complexity 1 42 0 356 388 21 18 chr3 110179476 110179757 -107857401 - ERVL LTR ERVL -4633 1131 850 21 0 0 0 chr3 110180190 110180211 -107856947 + AT_rich Low_complexity Low_complexity 1 21 0 1125 187 179 11 chr3 110180332 110180654 -107856504 - L1MA3 LINE L1 0 6305 5924 2062 159 45 13 chr3 110182413 110182790 -107854368 + MLT1B LTR MaLR 2 390 0 300 172 0 0 chr3 110183095 110183153 -107854005 + CT-rich Low_complexity Low_complexity 2 59 0 336 48 0 0 chr3 110183153 110183195 -107853963 + (CA)n Simple_repeat Simple_repeat 1 42 0 262 271 107 41 chr3 110183208 110183330 -107853828 + MER69A DNA AcHobo 2 131 -46 23 0 0 0 chr3 110186021 110186044 -107851114 + AT_rich Low_complexity Low_complexity 1 23 0 893 239 179 53 chr3 110186228 110186659 -107850499 + MLT1D LTR MaLR 21 505 0 311 299 112 86 chr3 110188887 110189048 -107848110 - L3 LINE CR1 -10 1567 1394 1807 130 0 78 chr3 110189048 110189399 -107847759 - AluSx SINE Alu 0 327 1 311 299 112 86 chr3 110189399 110189504 -107847654 - L3 LINE CR1 -183 1394 1293 3577 204 8 5 chr3 110189743 110190508 -107846650 + L1MB3 LINE L1 5417 6183 0 233 248 20 50 chr3 110191623 110191724 -107845434 + T-rich Low_complexity Low_complexity 5 102 0 1010 246 208 18 chr3 110192114 110192451 -107844707 - MLT1E2 LTR MaLR 0 626 226 207 0 0 0 chr3 110192504 110192527 -107844631 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1796 120 0 0 chr3 110192530 110192771 -107844387 - AluY SINE Alu -24 287 47 2099 134 3 6 chr3 110192849 110193162 -107843996 - AluSx SINE Alu 0 312 1 306 339 99 39 chr3 110193300 110193633 -107843525 - LTR33 LTR ERVL -99 422 70 867 226 17 6 chr3 110193736 110193917 -107843241 - MER58A DNA MER1_type 0 224 42 614 287 168 19 chr3 110194101 110194422 -107842736 + MLT1J LTR MaLR 99 467 -44 21 57 0 0 chr3 110194752 110194787 -107842371 + AT_rich Low_complexity Low_complexity 1 35 0 748 179 94 80 chr3 110195216 110195440 -107841718 + AluJo SINE Alu 2 228 -84 196 51 26 26 chr3 110195443 110195482 -107841676 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 247 328 26 9 chr3 110197124 110197240 -107839918 - L2 LINE L2 -8 3305 3188 22 35 0 0 chr3 110199476 110199505 -107837653 + AT_rich Low_complexity Low_complexity 1 29 0 258 250 0 0 chr3 110199861 110199913 -107837245 + MER3 DNA MER1_type 39 90 -119 231 103 0 0 chr3 110199913 110199952 -107837206 + (TAAAA)n Simple_repeat Simple_repeat 1 39 0 249 33 0 0 chr3 110200010 110200040 -107837118 + (CA)n Simple_repeat Simple_repeat 2 31 0 242 247 34 51 chr3 110200148 110200272 -107836886 + MLT1L LTR MaLR 455 552 -36 23 33 0 0 chr3 110200932 110200962 -107836196 + AT_rich Low_complexity Low_complexity 1 30 0 2038 139 0 7 chr3 110200978 110201272 -107835886 - AluSx SINE Alu -20 292 1 1719 246 102 16 chr3 110201637 110202088 -107835070 + MLT1E LTR MaLR 101 590 -3 195 242 0 0 chr3 110203881 110203943 -107833215 + (TA)n Simple_repeat Simple_repeat 1 62 0 212 122 24 0 chr3 110203945 110203986 -107833172 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 315 183 0 0 chr3 110205531 110205613 -107831545 + (TA)n Simple_repeat Simple_repeat 1 82 0 257 284 0 0 chr3 110205635 110205723 -107831435 + (TA)n Simple_repeat Simple_repeat 1 88 0 229 264 22 33 chr3 110205730 110205821 -107831337 + L1MC4 LINE L1 6614 6703 -1339 237 83 0 0 chr3 110206777 110206813 -107830345 + (CA)n Simple_repeat Simple_repeat 1 36 0 24 0 0 0 chr3 110207680 110207704 -107829454 + AT_rich Low_complexity Low_complexity 1 24 0 274 295 35 55 chr3 110207760 110208014 -107829144 + L1M4 LINE L1 3878 4126 -2020 461 184 19 0 chr3 110208365 110208468 -107828690 + L1MA7 LINE L1 6177 6281 -10 276 256 11 0 chr3 110209095 110209185 -107827973 + L1ME3A LINE L1 5851 5941 -229 234 0 0 0 chr3 110209464 110209490 -107827668 + (TTA)n Simple_repeat Simple_repeat 3 28 0 210 118 0 0 chr3 110210692 110210726 -107826432 + (CA)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr3 110210728 110210752 -107826406 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr3 110211047 110211069 -107826089 + AT_rich Low_complexity Low_complexity 1 22 0 2316 176 89 106 chr3 110211680 110212219 -107824939 - L1MA9 LINE L1 0 6312 5786 333 47 0 0 chr3 110212219 110212262 -107824896 + (CA)n Simple_repeat Simple_repeat 2 44 0 2316 176 89 106 chr3 110212262 110212428 -107824730 - L1MA9 LINE L1 -526 5786 5619 22 0 0 0 chr3 110212987 110213009 -107824149 + AT_rich Low_complexity Low_complexity 1 22 0 34 55 0 0 chr3 110213305 110213360 -107823798 + AT_rich Low_complexity Low_complexity 1 55 0 39 0 0 0 chr3 110213872 110213911 -107823247 + AT_rich Low_complexity Low_complexity 1 39 0 29 28 0 0 chr3 110214245 110214281 -107822877 + AT_rich Low_complexity Low_complexity 1 36 0 257 344 0 16 chr3 110214533 110214661 -107822497 + GA-rich Low_complexity Low_complexity 2 127 0 2105 138 3 0 chr3 110215050 110215361 -107821797 - AluSq SINE Alu -1 312 1 1979 143 98 15 chr3 110215780 110216116 -107821042 - THE1B LTR MaLR 0 364 1 10580 121 16 1 chr3 110216116 110217657 -107819501 - THE1B-int LTR MaLR 0 1580 17 1989 118 0 13 chr3 110217657 110217971 -107819187 + HERVL-A2 LTR ERVL 5345 5654 0 2443 136 42 50 chr3 110217971 110218428 -107818730 + MLT2A2 LTR ERVL 1 453 0 5612 58 1 4 chr3 110218775 110219486 -107817672 + L1PA7 LINE L1 5445 6153 -1 21 0 0 0 chr3 110219820 110219841 -107817317 + AT_rich Low_complexity Low_complexity 1 21 0 1429 209 91 28 chr3 110219936 110220133 -107817025 + MLT1B LTR MaLR 4 187 -203 201 39 0 0 chr3 110220133 110220159 -107816999 + (GA)n Simple_repeat Simple_repeat 1 26 0 1429 209 91 28 chr3 110220159 110220325 -107816833 + MLT1B LTR MaLR 187 390 0 228 301 98 24 chr3 110220434 110220557 -107816601 + MER5A DNA MER1_type 53 184 -5 542 286 56 0 chr3 110220897 110221058 -107816100 + MER45A DNA AcHobo 9 178 0 509 270 61 14 chr3 110221778 110221926 -107815232 - MIR SINE MIR 0 262 108 374 190 110 20 chr3 110223110 110223210 -107813948 - L2 LINE L2 -2 3311 3203 242 267 40 50 chr3 110223227 110223328 -107813830 + MER117 DNA MER1_type 45 144 -53 631 324 40 31 chr3 110223854 110224079 -107813079 - MIR SINE MIR 0 262 36 574 288 190 21 chr3 110224246 110224572 -107812586 - L2 LINE L2 0 3313 2933 2162 243 73 18 chr3 110226710 110227324 -107809834 + MER82 DNA MER2_type 6 653 0 243 0 0 0 chr3 110228072 110228099 -107809059 + (TCTA)n Simple_repeat Simple_repeat 3 29 0 190 310 18 106 chr3 110229982 110230037 -107807121 - MIR SINE MIR -90 118 60 414 0 0 0 chr3 110230037 110230083 -107807075 + (TA)n Simple_repeat Simple_repeat 1 46 0 190 310 18 106 chr3 110230083 110230094 -107807064 - MIR SINE MIR -148 60 50 342 45 0 0 chr3 110230094 110230138 -107807020 + (CA)n Simple_repeat Simple_repeat 1 44 0 190 310 18 106 chr3 110230138 110230183 -107806975 - MIR SINE MIR -158 50 16 225 0 0 0 chr3 110231215 110231240 -107805918 + (CA)n Simple_repeat Simple_repeat 1 25 0 1464 205 4 0 chr3 110233782 110234090 -107803068 + AluJo SINE Alu 6 314 0 195 42 0 0 chr3 110234092 110234116 -107803042 + (CAT)n Simple_repeat Simple_repeat 3 26 0 273 57 0 0 chr3 110234841 110234876 -107802282 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 21 0 0 0 chr3 110235420 110235441 -107801717 + AT_rich Low_complexity Low_complexity 1 21 0 234 91 0 0 chr3 110235650 110235683 -107801475 + (CATATA)n Simple_repeat Simple_repeat 2 34 0 789 221 10 2 chr3 110235811 110236111 -107801047 + MLT1A1 LTR MaLR 1 364 -1 6364 30 0 7 chr3 110236217 110236979 -107800179 - L1PA3 LINE L1 0 6155 5399 4943 34 6 2 chr3 110236978 110237607 -107799551 + L1M LINE L1 4750 5378 -788 * 25 0 0 0 chr3 110237655 110237680 -107799478 + AT_rich Low_complexity Low_complexity 1 25 0 219 338 25 0 chr3 110239378 110239458 -107797700 + L2 LINE L2 3223 3304 -9 250 181 125 0 chr3 110239966 110240038 -107797120 + L1MD1 LINE L1 3595 3675 -2471 644 129 6 37 chr3 110240055 110240218 -107796940 + (GAAA)n Simple_repeat Simple_repeat 3 160 0 183 246 0 0 chr3 110240204 110240261 -107796897 + GA-rich Low_complexity Low_complexity 4 60 0 * 888 259 85 25 chr3 110240273 110240636 -107796522 + L1MD1 LINE L1 3704 4088 -2058 * 2263 199 67 15 chr3 110240622 110241584 -107795574 + L1M2 LINE L1 4700 5714 -577 1093 166 9 42 chr3 110241580 110241797 -107795361 - L1MA9 LINE L1 -308 7025 6816 * 321 26 0 0 chr3 110241812 110241850 -107795308 + (TG)n Simple_repeat Simple_repeat 1 38 0 2250 181 23 28 chr3 110241850 110242151 -107795007 - Tigger2a DNA MER2_type -2280 428 128 954 131 0 6 chr3 110242151 110242311 -107794847 - L1PA10 LINE L1 0 6168 6010 2250 181 23 28 chr3 110242311 110242439 -107794719 - Tigger2a DNA MER2_type -2580 128 1 488 165 33 0 chr3 110242466 110242557 -107794601 - L1MA9 LINE L1 -1444 5723 5630 * 3191 284 50 36 chr3 110242556 110243885 -107793273 - L1MA9 LINE L1 -2759 4408 3099 2329 104 14 14 chr3 110243885 110244240 -107792918 - THE1A LTR MaLR 0 355 1 10374 119 19 10 chr3 110244240 110245682 -107791476 - THE1A-int LTR MaLR 0 1580 121 369 0 0 0 chr3 110245682 110245723 -107791435 + (TG)n Simple_repeat Simple_repeat 2 42 0 10374 119 19 10 chr3 110245723 110245846 -107791312 - THE1A-int LTR MaLR -1459 121 1 2210 120 14 8 chr3 110245848 110246199 -107790959 - THE1A LTR MaLR -2 353 1 3191 284 50 36 chr3 110246199 110247899 -107789259 - L1MA9 LINE L1 -4068 3099 1619 246 224 35 0 chr3 110248742 110248800 -107788358 - L1MA9 LINE L1 -6221 877 818 1321 210 30 20 chr3 110248865 110249165 -107787993 + AluJo SINE Alu 1 303 -9 1004 130 12 0 chr3 110249187 110249356 -107787802 + GA-rich Low_complexity Low_complexity 3 173 0 1975 245 36 20 chr3 110249388 110250573 -107786585 + L1MD1 LINE L1 4407 5731 -628 599 188 0 0 chr3 110250629 110250725 -107786433 - FRAM SINE Alu -30 146 51 390 198 54 27 chr3 110250773 110250884 -107786274 + L1MD1 LINE L1 5767 5880 -362 25 31 0 0 chr3 110251060 110251092 -107786066 + AT_rich Low_complexity Low_complexity 1 32 0 311 367 0 0 chr3 110251092 110251201 -107785957 + MER5A DNA MER1_type 1 109 -80 1430 206 85 60 chr3 110251276 110251712 -107785446 + L1MB1 LINE L1 5338 5784 -387 213 39 0 0 chr3 110251715 110251741 -107785417 + (TG)n Simple_repeat Simple_repeat 1 26 0 189 147 0 0 chr3 110251758 110251792 -107785366 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 434 204 21 0 chr3 110251796 110251889 -107785269 + L1MB1 LINE L1 5912 6006 -162 1835 172 78 0 chr3 110251920 110252281 -107784877 + L1MB2 LINE L1 5781 6169 -2 21 71 0 0 chr3 110252439 110252481 -107784677 + AT_rich Low_complexity Low_complexity 1 42 0 37 18 0 18 chr3 110252618 110252637 -107784521 + AT_rich Low_complexity Low_complexity 1 19 -35 2046 60 3 50 chr3 110252637 110252936 -107784222 + AluY SINE Alu 1 285 -26 37 18 0 18 chr3 110252936 110252971 -107784187 + AT_rich Low_complexity Low_complexity 19 54 0 202 360 13 0 chr3 110253067 110253142 -107784016 + (CA)n Simple_repeat Simple_repeat 2 77 0 1025 201 71 120 chr3 110253144 110253512 -107783646 + MLT1A1 LTR MaLR 13 362 -3 3660 87 200 5 chr3 110254106 110254682 -107782476 + LTR12 LTR ERV1 1 688 0 25 0 0 0 chr3 110255105 110255130 -107782028 + AT_rich Low_complexity Low_complexity 1 25 0 372 262 10 29 chr3 110255299 110255402 -107781756 + MER5A DNA MER1_type 10 110 -79 502 342 106 27 chr3 110255783 110256257 -107780901 - ERVL LTR ERVL -1407 4357 3847 1475 205 37 26 chr3 110256483 110256837 -107780321 - MLT1A1 LTR MaLR -9 387 1 1267 221 103 19 chr3 110256891 110257212 -107779946 + MLT1D LTR MaLR 115 462 -43 706 350 38 9 chr3 110257234 110257682 -107779476 - ERVL LTR ERVL -2021 3633 3173 598 262 76 9 chr3 110259318 110259528 -107777630 + L1ME3A LINE L1 5353 5576 -588 1819 180 5 73 chr3 110259592 110260004 -107777154 - MLT1B LTR MaLR 0 390 7 537 272 101 41 chr3 110260010 110260484 -107776674 + L1ME3A LINE L1 5647 6161 -9 191 322 68 75 chr3 110260642 110260788 -107776370 + MIR3 SINE MIR 59 203 -5 2683 20 0 0 chr3 110260824 110261128 -107776030 - AluYa5 SINE Alu -7 304 1 31 44 0 0 chr3 110261248 110261293 -107775865 + AT_rich Low_complexity Low_complexity 1 45 0 374 319 18 35 chr3 110261687 110261856 -107775302 - L2 LINE L2 -2 3311 3146 1168 296 112 30 chr3 110263266 110264111 -107773047 - L2 LINE L2 -2 3311 2381 2021 132 7 0 chr3 110264446 110264750 -107772408 + AluSc SINE Alu 1 306 -3 2317 98 0 16 chr3 110265882 110266198 -107770960 - AluSq SINE Alu -2 311 1 25 0 0 0 chr3 110266285 110266310 -107770848 + AT_rich Low_complexity Low_complexity 1 25 0 1821 158 150 5 chr3 110266750 110267124 -107770034 - MSTA LTR MaLR 0 428 1 271 114 0 0 chr3 110267484 110267528 -107769630 - Alu SINE Alu -257 44 1 1393 186 7 46 chr3 110267601 110267913 -107769245 + AluJb SINE Alu 9 309 0 271 245 230 14 chr3 110268452 110268591 -107768567 + MIR SINE MIR 34 202 -60 21 0 0 0 chr3 110268648 110268669 -107768489 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 110268874 110268895 -107768263 + AT_rich Low_complexity Low_complexity 1 21 0 224 292 14 0 chr3 110269095 110269167 -107767991 + (CATA)n Simple_repeat Simple_repeat 4 76 0 40 49 0 0 chr3 110269369 110269430 -107767728 + AT_rich Low_complexity Low_complexity 1 61 0 324 0 0 0 chr3 110269629 110269665 -107767493 + (TTA)n Simple_repeat Simple_repeat 3 38 0 3341 39 7 5 chr3 110269665 110270075 -107767083 - L1PA4 LINE L1 -18 6137 5727 309 319 35 35 chr3 110270712 110270856 -107766302 - L2 LINE L2 -985 2329 2186 1897 176 20 78 chr3 110270919 110271327 -107765831 - MLT2B2 LTR ERVL -130 385 2 11033 188 21 15 chr3 110271328 110273444 -107763714 - ERVL-B2 LTR ERVL -7 5757 3629 195 69 0 0 chr3 110274097 110274126 -107763032 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1690 151 28 69 chr3 110274652 110274876 -107762282 - THE1C LTR MaLR 0 375 172 2427 85 0 0 chr3 110274876 110275183 -107761975 + AluSg SINE Alu 1 307 -3 1690 151 28 69 chr3 110275183 110275349 -107761809 - THE1C LTR MaLR -203 172 1 454 327 77 41 chr3 110275541 110276110 -107761048 - L1MEd LINE L1 -846 1644 963 240 278 44 11 chr3 110276156 110276246 -107760912 + MIR SINE MIR 89 181 -81 2260 101 3 0 chr3 110276684 110276981 -107760177 + AluSg SINE Alu 1 298 -12 28 0 0 0 chr3 110277918 110277946 -107759212 + AT_rich Low_complexity Low_complexity 1 28 0 598 228 16 0 chr3 110278037 110278164 -107758994 + FLAM_C SINE Alu 5 133 0 206 227 0 0 chr3 110278221 110278265 -107758893 + CT-rich Low_complexity Low_complexity 1 44 0 5845 23 3 0 chr3 110278310 110278998 -107758160 + L1PA3 LINE L1 5463 6152 -3 619 329 80 23 chr3 110279067 110279545 -107757613 + L1MC/D LINE L1 5255 5759 -2049 336 83 0 0 chr3 110279552 110279600 -107757558 + (TA)n Simple_repeat Simple_repeat 1 48 0 606 238 89 6 chr3 110279649 110279817 -107757341 + MER58A DNA MER1_type 26 207 -17 1056 131 114 6 chr3 110279913 110280153 -107757005 + Tigger1 DNA MER2_type 26 328 -2090 25 31 0 0 chr3 110280848 110280880 -107756278 + AT_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr3 110281284 110281310 -107755848 + AT_rich Low_complexity Low_complexity 1 26 0 1416 244 42 32 chr3 110281444 110281846 -107755312 + MLT1C LTR MaLR 6 411 -56 1943 126 25 0 chr3 110281882 110282159 -107754999 - AluSx SINE Alu -28 284 1 243 0 0 0 chr3 110282195 110282222 -107754936 + (T)n Simple_repeat Simple_repeat 1 27 0 319 322 45 36 chr3 110282466 110282801 -107754357 + L1MD2 LINE L1 3892 4229 -1917 12870 157 56 3 chr3 110283296 110285051 -107752107 - Tigger1 DNA MER2_type -5 2413 752 1933 124 4 0 chr3 110285051 110285326 -107751832 + AluSg SINE Alu 1 276 -34 333 0 0 0 chr3 110285326 110285363 -107751795 + (TC)n Simple_repeat Simple_repeat 2 38 0 216 0 0 0 chr3 110285362 110285386 -107751772 + (TA)n Simple_repeat Simple_repeat 1 24 0 12870 157 56 3 chr3 110285363 110285385 -107751773 - Tigger1 DNA MER2_type -1666 752 733 315 0 0 0 chr3 110285385 110285420 -107751738 + (GA)n Simple_repeat Simple_repeat 2 36 0 12870 157 56 3 chr3 110285420 110285773 -107751385 - Tigger1 DNA MER2_type -1685 733 400 285 29 0 0 chr3 110285773 110285807 -107751351 + (TAA)n Simple_repeat Simple_repeat 3 36 0 12870 157 56 3 chr3 110285807 110285988 -107751170 - Tigger1 DNA MER2_type -2018 400 1 312 363 24 12 chr3 110285988 110286156 -107751002 + L1MD2 LINE L1 4752 4921 -1225 326 331 135 71 chr3 110286445 110286658 -107750500 + L1MD2 LINE L1 5259 5457 -705 6657 85 6 0 chr3 110286658 110287650 -107749508 + L1PA8 LINE L1 5172 6168 -4 326 331 135 71 chr3 110287650 110287833 -107749325 + L1MD2 LINE L1 5457 5672 -490 21 0 0 0 chr3 110287844 110287865 -107749293 + AT_rich Low_complexity Low_complexity 1 21 0 254 191 64 0 chr3 110287885 110287932 -107749226 - Tigger1 DNA MER2_type -1686 732 683 30 59 0 0 chr3 110288101 110288152 -107749006 + AT_rich Low_complexity Low_complexity 1 51 0 32 43 0 0 chr3 110288257 110288303 -107748855 + AT_rich Low_complexity Low_complexity 1 46 0 2137 106 0 29 chr3 110288754 110289066 -107748092 + AluSq SINE Alu 1 303 -10 2400 25 0 0 chr3 110292265 110292540 -107744618 + AluY SINE Alu 27 301 -10 21 36 0 0 chr3 110292901 110292929 -107744229 + AT_rich Low_complexity Low_complexity 1 28 0 3043 152 37 58 chr3 110293808 110294328 -107742830 + L1PA3 LINE L1 5321 5822 -333 225 170 0 0 chr3 110294328 110294375 -107742783 - LTR66 LTR ERVL -167 443 397 3043 152 37 58 chr3 110294375 110294701 -107742457 + L1PA3 LINE L1 5822 6153 -2 1165 107 45 0 chr3 110294701 110294879 -107742279 + L1PB1 LINE L1 5959 6144 -7 258 286 92 17 chr3 110295426 110295545 -107741613 - L2 LINE L2 -3 3310 3183 208 268 36 0 chr3 110297067 110297123 -107740035 + MER5C DNA MER1_type 267 324 0 3558 256 55 42 chr3 110297834 110299057 -107738101 + L1M4 LINE L1 2650 3902 -2244 1523 134 0 22 chr3 110299057 110299289 -107737869 - AluSg SINE Alu -78 232 6 3558 256 55 42 chr3 110299289 110299704 -107737454 + L1M4 LINE L1 3902 4310 -1836 1511 224 117 19 chr3 110299708 110300136 -107737022 + L1MD2 LINE L1 5869 6338 -21 2025 221 56 14 chr3 110301113 110301597 -107735561 - MLT1D LTR MaLR 0 505 2 29 0 0 0 chr3 110301912 110301941 -107735217 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr3 110303145 110303165 -107733993 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 26 30 0 0 chr3 110303687 110303720 -107733438 + AT_rich Low_complexity Low_complexity 1 33 0 301 227 0 21 chr3 110303867 110303964 -107733194 + CT-rich Low_complexity Low_complexity 5 99 0 1922 135 31 0 chr3 110304156 110304444 -107732714 + AluSx SINE Alu 5 301 -11 242 0 61 0 chr3 110304721 110304754 -107732404 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 1885 125 21 4 chr3 110304768 110305049 -107732109 - AluSg SINE Alu -22 288 3 290 252 9 9 chr3 110305591 110305698 -107731460 + (TA)n Simple_repeat Simple_repeat 2 108 0 297 0 0 0 chr3 110305698 110305731 -107731427 + (TG)n Simple_repeat Simple_repeat 2 34 0 249 286 26 0 chr3 110306045 110306122 -107731036 + GA-rich Low_complexity Low_complexity 3 81 0 21 57 0 0 chr3 110306367 110306402 -107730756 + AT_rich Low_complexity Low_complexity 1 35 0 223 215 51 40 chr3 110306624 110306801 -107730357 + (TA)n Simple_repeat Simple_repeat 2 180 0 * 282 155 39 29 chr3 110306782 110306885 -107730273 + (TTATA)n Simple_repeat Simple_repeat 1 104 0 309 312 48 8 chr3 110307276 110307401 -107729757 - MARNA DNA Mariner -372 214 85 2456 63 0 0 chr3 110308022 110308324 -107728834 + AluY SINE Alu 7 308 -3 22 35 0 0 chr3 110310513 110310542 -107726616 + AT_rich Low_complexity Low_complexity 1 29 0 958 244 24 83 chr3 110310604 110310789 -107726369 - L1MC5 LINE L1 -753 7208 7014 1432 173 61 30 chr3 110310789 110311084 -107726074 - AluJb SINE Alu -8 304 1 958 244 24 83 chr3 110311084 110311401 -107725757 - L1MC5 LINE L1 -947 7014 6736 245 303 77 109 chr3 110311407 110311747 -107725411 + L2 LINE L2 2208 2536 -778 297 319 142 56 chr3 110312157 110312445 -107724713 + LTR16C LTR ERVL 128 440 -51 1097 229 161 26 chr3 110312810 110313159 -107723999 - MSTD LTR MaLR 0 396 1 334 253 61 20 chr3 110313556 110313655 -107723503 - L2 LINE L2 -19 3294 3192 1876 179 3 34 chr3 110315736 110316093 -107721065 + MER7A DNA MER2_type 2 345 -1 513 287 70 0 chr3 110316426 110316583 -107720575 - MLT1J LTR MaLR -341 170 3 219 69 0 0 chr3 110316606 110316635 -107720523 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 290 295 134 51 chr3 110317290 110317544 -107719614 + L2 LINE L2 1421 1695 -1619 1161 264 64 7 chr3 110317720 110318111 -107719047 - L1ME1 LINE L1 -167 5999 5628 1835 256 91 32 chr3 110318111 110318928 -107718230 - L1ME1 LINE L1 -1772 4374 3510 589 223 50 25 chr3 110318951 110319137 -107718021 - L1M4 LINE L1 -685 5489 5300 180 77 0 0 chr3 110319250 110319276 -107717882 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1701 306 49 29 chr3 110319277 110320469 -107716689 - L1M4 LINE L1 -1205 4941 3512 29 28 0 0 chr3 110320826 110320862 -107716296 + AT_rich Low_complexity Low_complexity 1 36 0 1525 149 71 0 chr3 110321317 110321598 -107715560 + AluSp SINE Alu 3 303 -10 330 247 0 103 chr3 110323390 110323536 -107713622 + MER94 DNA DNA 2 132 -2 23 33 0 0 chr3 110323896 110323926 -107713232 + AT_rich Low_complexity Low_complexity 1 30 0 876 284 59 42 chr3 110323997 110324406 -107712752 + MER47B DNA MER2_type 1 416 -2 274 321 179 7 chr3 110325002 110325142 -107712016 + L2 LINE L2 3108 3271 -1 207 0 0 0 chr3 110325682 110325705 -107711453 + (CA)n Simple_repeat Simple_repeat 1 23 0 289 196 84 3 chr3 110325781 110325874 -107711284 + L1ME1 LINE L1 6067 6164 0 1067 290 140 49 chr3 110325889 110326516 -107710642 + L2 LINE L2 2260 2943 -371 206 139 23 23 chr3 110326545 110326588 -107710570 + L2 LINE L2 3271 3313 0 551 197 45 0 chr3 110327243 110327375 -107709783 - LTR37A LTR ERV1 -3 423 286 1160 200 97 62 chr3 110328615 110328905 -107708253 - AluJb SINE Alu -2 300 1 25 51 0 0 chr3 110329415 110329454 -107707704 + AT_rich Low_complexity Low_complexity 1 39 0 289 176 0 20 chr3 110330111 110330162 -107706996 + polypurine Low_complexity Low_complexity 3 52 0 756 141 11 23 chr3 110330163 110330340 -107706818 + GA-rich Low_complexity Low_complexity 2 176 0 606 301 62 22 chr3 110331220 110331575 -107705583 - L1ME3A LINE L1 -289 5881 5513 23 78 0 0 chr3 110331600 110331651 -107705507 + AT_rich Low_complexity Low_complexity 1 51 0 435 280 105 7 chr3 110332149 110332292 -107704866 - L1ME3A LINE L1 -2227 5581 5425 1490 159 0 4 chr3 110332310 110332561 -107704597 - L1PA16 LINE L1 -9 6157 5908 3921 192 25 16 chr3 110332661 110333653 -107703505 - L1PA16 LINE L1 -99 6067 4903 1238 98 11 16 chr3 110333653 110333837 -107703321 + AluY SINE Alu 127 309 -2 2010 245 32 18 chr3 110333837 110334332 -107702826 - L1 LINE L1 -1251 4895 4390 243 0 0 0 chr3 110334332 110334359 -107702799 + (TG)n Simple_repeat Simple_repeat 2 28 0 2010 245 32 18 chr3 110334359 110334427 -107702731 - L1 LINE L1 -1756 4390 4324 5013 206 26 9 chr3 110334440 110337238 -107699920 + L1PA13 LINE L1 1 3091 -3706 922 185 17 0 chr3 110337237 110337415 -107699743 - L1 LINE L1 -1938 4208 4028 * 336 252 66 26 chr3 110337442 110337593 -107699565 - L1M LINE L1 -2398 5410 5254 886 217 20 30 chr3 110337807 110338005 -107699153 - MLT1B LTR MaLR -2 388 193 242 329 91 21 chr3 110338250 110339021 -107698137 - L1M4 LINE L1 -1632 4514 3690 21 36 0 0 chr3 110339029 110339057 -107698101 + AT_rich Low_complexity Low_complexity 1 28 0 29 28 0 0 chr3 110339864 110339900 -107697258 + AT_rich Low_complexity Low_complexity 1 36 0 1927 115 56 0 chr3 110340356 110340642 -107696516 + AluSp SINE Alu 3 304 -9 752 113 11 43 chr3 110340823 110341008 -107696150 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 256 74 0 56 chr3 110341019 110341073 -107696085 + (TTCC)n Simple_repeat Simple_repeat 1 51 0 335 336 123 24 chr3 110341675 110341928 -107695230 - L1ME LINE L1 -4982 1088 811 198 71 0 0 chr3 110342117 110342145 -107695013 + (CAA)n Simple_repeat Simple_repeat 2 29 0 306 0 0 0 chr3 110344644 110344678 -107692480 + (TG)n Simple_repeat Simple_repeat 2 35 0 198 316 180 0 chr3 110345089 110345228 -107691930 + MIR SINE MIR 45 208 -54 3592 217 33 58 chr3 110345560 110346197 -107690961 - L1MD1 LINE L1 0 6636 5984 4861 153 39 15 chr3 110346197 110347079 -107690079 - MER4D LTR ERV1 0 903 1 3592 217 33 58 chr3 110347079 110347875 -107689283 - L1MD1 LINE L1 -652 5984 5246 429 180 32 48 chr3 110347909 110348039 -107689119 - L1MD1 LINE L1 -3896 2644 2514 237 133 50 33 chr3 110348061 110348121 -107689037 - L1MD1 LINE L1 -3991 2549 2489 5944 260 82 47 chr3 110348141 110350166 -107686992 - L1MD1 LINE L1 -4020 2520 566 180 0 0 0 chr3 110350166 110350186 -107686972 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 5944 260 82 47 chr3 110350186 110350307 -107686851 - L1MD1 LINE L1 -5974 566 451 222 37 0 0 chr3 110350307 110350334 -107686824 + (TTG)n Simple_repeat Simple_repeat 1 27 0 5944 260 82 47 chr3 110350334 110350598 -107686560 - L1MD1 LINE L1 -6089 451 26 4382 197 39 5 chr3 110350738 110351928 -107685230 + L1MA8 LINE L1 4983 6206 -85 22 35 0 0 chr3 110352623 110352652 -107684506 + AT_rich Low_complexity Low_complexity 1 29 0 248 250 17 0 chr3 110353814 110353874 -107683284 + GA-rich Low_complexity Low_complexity 3 63 0 22 0 0 0 chr3 110354460 110354482 -107682676 + AT_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chr3 110355389 110355413 -107681745 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2192 110 3 0 chr3 110355426 110355727 -107681431 - AluSx SINE Alu -10 302 1 355 288 18 18 chr3 110355785 110355896 -107681262 + MIR SINE MIR 152 262 0 360 365 31 51 chr3 110356011 110356398 -107680760 + L2 LINE L2 2695 3069 -244 4440 269 20 39 chr3 110356447 110358114 -107679044 + L1M4 LINE L1 3256 4890 -1256 496 280 13 0 chr3 110358249 110358406 -107678752 + L1MDa LINE L1 1882 2040 -4500 197 116 0 47 chr3 110358425 110358468 -107678690 + (CATA)n Simple_repeat Simple_repeat 4 44 0 814 273 23 59 chr3 110358656 110359216 -107677942 + L1MDa LINE L1 2398 2946 -3594 190 333 0 0 chr3 110360924 110360981 -107676177 + L2 LINE L2 2917 2973 -299 331 337 128 10 chr3 110361012 110361208 -107675950 - MIR SINE MIR -14 248 30 592 237 85 47 chr3 110362161 110362372 -107674786 - MER20 DNA MER1_type 0 219 1 288 120 0 0 chr3 110363037 110363087 -107674071 + (T)n Simple_repeat Simple_repeat 1 50 0 23 0 0 0 chr3 110363220 110363243 -107673915 + GC_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr3 110364486 110364525 -107672633 + AT_rich Low_complexity Low_complexity 1 39 0 195 42 0 0 chr3 110364551 110364575 -107672583 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 455 68 0 27 chr3 110365828 110365901 -107671257 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 24 0 0 0 chr3 110367084 110367108 -107670050 + AT_rich Low_complexity Low_complexity 1 24 0 1301 56 33 88 chr3 110369221 110369436 -107667722 - AluY SINE Alu -8 303 101 203 350 70 0 chr3 110369897 110369997 -107667161 - L2 LINE L2 -674 2640 2534 1362 215 54 34 chr3 110370034 110370383 -107666775 + MLT1A1 LTR MaLR 10 365 0 685 276 138 30 chr3 110370620 110371083 -107666075 - L1MC4a LINE L1 -1926 5882 5370 180 111 0 0 chr3 110371088 110371115 -107666043 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 2134 73 43 10 chr3 110371117 110371418 -107665740 - AluY SINE Alu 0 311 1 3274 189 28 11 chr3 110371926 110372574 -107664584 + MER39 LTR ERV1 1 707 0 868 299 17 14 chr3 110373069 110373427 -107663731 + L1MA6 LINE L1 5933 6291 -9 805 291 24 63 chr3 110373856 110374351 -107662807 + L1 LINE L1 3370 3845 -2301 6424 62 26 50 chr3 110374411 110375851 -107661307 - L1PA7 LINE L1 -7 6147 4726 21 0 0 0 chr3 110375954 110375975 -107661183 + GC_rich Low_complexity Low_complexity 1 21 0 291 233 107 0 chr3 110376207 110376310 -107660848 - MLT1A1 LTR MaLR -227 138 25 479 267 106 47 chr3 110376396 110376801 -107660357 - L1MDb LINE L1 -5115 955 527 329 311 71 67 chr3 110376983 110377172 -107659986 - L1MDb LINE L1 -5622 448 256 1402 186 54 120 chr3 110377172 110377672 -107659486 + MLT1C LTR MaLR 1 467 0 329 311 71 67 chr3 110377672 110377707 -107659451 - L1MDb LINE L1 -5814 256 223 1578 134 86 3 chr3 110377890 110378204 -107658954 - L1P4 LINE L1 -539 5627 5288 51 0 0 0 chr3 110382874 110382925 -107654233 + AT_rich Low_complexity Low_complexity 1 51 0 28 61 0 0 chr3 110386554 110386603 -107650555 + AT_rich Low_complexity Low_complexity 1 49 0 1147 237 16 72 chr3 110387537 110387900 -107649258 - MER2 DNA MER2_type -1 343 1 243 0 0 0 chr3 110388101 110388128 -107649030 + (CA)n Simple_repeat Simple_repeat 2 28 0 1675 254 8 16 chr3 110388136 110388624 -107648534 + L1 LINE L1 4412 4895 -1251 2027 138 0 3 chr3 110388624 110388936 -107648222 - AluSx SINE Alu -1 311 1 308 184 0 149 chr3 110389329 110389416 -107647742 - L2 LINE L2 -2 3311 3238 207 0 0 0 chr3 110389529 110389552 -107647606 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 891 203 33 6 chr3 110389558 110389740 -107647418 + Tigger5 DNA MER2_type 52 238 -2085 360 296 24 12 chr3 110389730 110389899 -107647259 + Tigger5 DNA MER2_type 2085 2255 -68 * 242 97 32 48 chr3 110390024 110390086 -107647072 + (CCCA)n Simple_repeat Simple_repeat 2 62 0 297 75 0 0 chr3 110390088 110390128 -107647030 + (GGGAA)n Simple_repeat Simple_repeat 4 43 0 24 0 0 0 chr3 110390153 110390177 -107646981 + AT_rich Low_complexity Low_complexity 1 24 0 396 108 15 0 chr3 110390177 110390242 -107646916 - L1MA9 LINE L1 0 6312 6247 301 344 122 5 chr3 110390542 110390731 -107646427 + MIR SINE MIR 15 225 -37 2628 7 0 0 chr3 110390731 110391022 -107646136 + AluYa5 SINE Alu 1 291 -20 270 305 59 93 chr3 110391163 110391399 -107645759 - L2 LINE L2 0 3313 3086 1258 200 47 0 chr3 110391442 110391717 -107645441 - L1MC1 LINE L1 -9 6324 6037 419 222 60 8 chr3 110391722 110391839 -107645319 - L1MC1 LINE L1 -690 5654 5532 27 0 0 0 chr3 110392440 110392467 -107644691 + AT_rich Low_complexity Low_complexity 1 27 0 23 33 0 0 chr3 110392490 110392520 -107644638 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr3 110392555 110392584 -107644574 + AT_rich Low_complexity Low_complexity 1 29 0 250 236 100 9 chr3 110392715 110392825 -107644333 - L1ME4a LINE L1 -194 5927 5808 1870 284 11 0 chr3 110393059 110393632 -107643526 - L1ME4a LINE L1 -1048 5098 4520 326 322 96 58 chr3 110393675 110394038 -107643120 + L1M2 LINE L1 816 1192 -5657 35 63 0 0 chr3 110394635 110394698 -107642460 + AT_rich Low_complexity Low_complexity 1 63 0 4639 167 58 9 chr3 110394967 110395918 -107641240 + L1MA4 LINE L1 5228 6223 -77 187 405 11 11 chr3 110397203 110397292 -107639866 + MER5B DNA MER1_type 26 114 -64 11993 57 12 0 chr3 110397852 110399571 -107637587 - L1P2 LINE L1 -609 5545 3805 947 210 4 48 chr3 110399771 110400042 -107637116 + AluJb SINE Alu 27 285 -27 902 159 13 13 chr3 110400542 110400699 -107636459 + Tigger1 DNA MER2_type 1 157 -2261 * 1155 111 17 94 chr3 110400688 110400922 -107636236 + Tigger1 DNA MER2_type 2202 2417 -1 230 290 14 0 chr3 110401514 110401583 -107635575 + CT-rich Low_complexity Low_complexity 1 70 0 961 171 278 4 chr3 110401583 110401828 -107635330 - AluJb SINE Alu 0 381 1 586 332 59 71 chr3 110401851 110402680 -107634478 + L2 LINE L2 1344 2162 -1152 679 150 0 17 chr3 110402734 110402854 -107634304 - AluSc SINE Alu -55 254 137 544 180 0 0 chr3 110402853 110402942 -107634216 - AluS SINE Alu -224 89 1 * 309 211 53 0 chr3 110403345 110403421 -107633737 + L1MA3 LINE L1 6226 6305 0 323 376 95 14 chr3 110403461 110403682 -107633476 - L2 LINE L2 -616 2698 2460 434 294 159 14 chr3 110404141 110404355 -107632803 - MIR SINE MIR -11 251 7 321 286 0 0 chr3 110404407 110404526 -107632632 + GA-rich Low_complexity Low_complexity 1 119 0 200 61 61 0 chr3 110404761 110404794 -107632364 + T-rich Low_complexity Low_complexity 5 39 0 381 200 0 0 chr3 110404983 110405043 -107632115 + AluJ/FLAM SINE Alu 2 61 -241 759 215 60 10 chr3 110405875 110406075 -107631083 - MER2 DNA MER2_type -134 211 2 1369 255 48 37 chr3 110406978 110408171 -107628987 + L1MC/D LINE L1 4314 5507 -745 1957 212 37 27 chr3 110408277 110408993 -107628165 + L1MC1 LINE L1 4957 5672 -661 1286 204 47 0 chr3 110408981 110409256 -107627902 + L1MC1 LINE L1 6037 6324 -9 * 270 305 59 93 chr3 110409299 110409535 -107627623 + L2 LINE L2 3086 3313 0 297 349 118 5 chr3 110409644 110409839 -107627319 - MIR SINE MIR -31 231 15 396 108 15 0 chr3 110410139 110410204 -107626954 + L1MA9 LINE L1 6247 6312 0 24 0 0 0 chr3 110410204 110410228 -107626930 + AT_rich Low_complexity Low_complexity 1 24 0 446 136 12 0 chr3 110410253 110410334 -107626824 + C-rich Low_complexity Low_complexity 3 84 0 264 185 0 0 chr3 110410321 110410375 -107626783 + CT-rich Low_complexity Low_complexity 5 58 0 * 379 265 41 27 chr3 110411516 110411663 -107625495 - MER104 DNA Tc2 -6 174 26 548 58 0 0 chr3 110411666 110411735 -107625423 - L1P LINE L1 -756 5375 5307 4867 88 6 3 chr3 110411735 110412400 -107624758 + L1PA8 LINE L1 5498 6168 -4 186 43 0 0 chr3 110412400 110412423 -107624735 + (TA)n Simple_repeat Simple_repeat 2 24 0 31 76 0 0 chr3 110412806 110412872 -107624286 + AT_rich Low_complexity Low_complexity 1 66 0 28 0 0 0 chr3 110412996 110413024 -107624134 + AT_rich Low_complexity Low_complexity 1 28 0 204 159 23 0 chr3 110413919 110413963 -107623195 + (TA)n Simple_repeat Simple_repeat 2 46 0 7883 198 51 20 chr3 110414482 110417202 -107619956 + L1MA4 LINE L1 3489 6299 -1 24 0 0 0 chr3 110417459 110417483 -107619675 + AT_rich Low_complexity Low_complexity 1 24 0 1878 167 74 115 chr3 110417518 110418206 -107618952 - MER4A LTR ERV1 -4 660 1 186 43 0 0 chr3 110418514 110418537 -107618621 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 23 33 0 0 chr3 110418880 110418910 -107618248 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr3 110419617 110419654 -107617504 + AT_rich Low_complexity Low_complexity 1 37 0 237 328 0 0 chr3 110420042 110420100 -107617058 + Charlie1 DNA MER1_type 2 59 -2702 28 48 0 0 chr3 110420100 110420142 -107617016 + AT_rich Low_complexity Low_complexity 1 42 0 2004 220 70 11 chr3 110420143 110420770 -107616388 + Charlie1 DNA MER1_type 2094 2757 -4 472 293 53 7 chr3 110420773 110420923 -107616235 + MIR SINE MIR 8 164 -98 2211 193 10 80 chr3 110420956 110421443 -107615715 + MLT2B2 LTR ERVL 1 453 -62 781 138 23 6 chr3 110421456 110421630 -107615528 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 240 231 0 0 chr3 110421630 110421682 -107615476 + MLT2B2 LTR ERVL 503 554 0 1331 273 111 9 chr3 110421737 110422474 -107614684 + L1M4 LINE L1 3053 3864 -2282 854 233 63 63 chr3 110422569 110422869 -107614289 - L1M4 LINE L1 -1153 5491 5192 * 983 252 67 21 chr3 110422861 110423234 -107613924 - L1M4 LINE L1 -1663 4981 4592 3849 269 81 21 chr3 110423675 110425507 -107611651 - L1M4 LINE L1 -1989 4655 2714 2930 257 96 45 chr3 110425507 110425745 -107611413 - L1M4 LINE L1 -5331 1211 986 236 30 30 0 chr3 110425745 110425778 -107611380 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 1839 154 19 19 chr3 110425782 110426094 -107611064 - AluSx SINE Alu 0 312 1 2930 257 96 45 chr3 110426094 110426258 -107610900 - L1M4 LINE L1 -5558 984 830 384 22 0 0 chr3 110426258 110426303 -107610855 + (TG)n Simple_repeat Simple_repeat 2 46 0 2930 257 96 45 chr3 110426303 110427020 -107610138 - L1M4 LINE L1 -5712 830 29 338 227 109 42 chr3 110427041 110427160 -107609998 - L1MEc LINE L1 -4128 2268 2142 345 353 57 29 chr3 110427171 110427415 -107609743 + L1ME3A LINE L1 5587 5837 -333 1061 264 44 33 chr3 110427722 110428179 -107608979 - LTR40a LTR ERVL 0 519 103 1550 169 36 26 chr3 110428179 110428481 -107608677 - AluJb SINE Alu -7 305 1 1061 264 44 33 chr3 110428481 110428586 -107608572 - LTR40a LTR ERVL -416 103 1 26 88 0 0 chr3 110428973 110429041 -107608117 + AT_rich Low_complexity Low_complexity 1 68 0 2092 135 0 6 chr3 110430618 110430930 -107606228 - AluSx SINE Alu -2 310 1 468 349 30 5 chr3 110431784 110431982 -107605176 + MIR SINE MIR 54 256 -6 372 290 0 9 chr3 110432117 110432224 -107604934 - MER5A DNA MER1_type -80 109 4 22 56 0 0 chr3 110432728 110432764 -107604394 + AT_rich Low_complexity Low_complexity 1 36 0 2531 42 0 3 chr3 110433059 110433367 -107603791 - AluY SINE Alu -4 307 1 279 259 172 26 chr3 110433524 110433640 -107603518 + L2 LINE L2 3181 3313 0 25 31 0 0 chr3 110433980 110434012 -107603146 + AT_rich Low_complexity Low_complexity 1 32 0 1788 141 38 19 chr3 110435222 110435590 -107601568 + L1MA1 LINE L1 5928 6302 0 339 25 0 0 chr3 110435840 110435880 -107601278 + (TA)n Simple_repeat Simple_repeat 1 40 0 1765 167 10 22 chr3 110435881 110436263 -107600895 - Tigger3(Golem) DNA MER2_type -4 3025 1 33 25 0 0 chr3 110436380 110436420 -107600738 + AT_rich Low_complexity Low_complexity 1 40 0 234 292 22 0 chr3 110436479 110436568 -107600590 - L1ME LINE L1 -331 5831 5741 2517 256 40 1 chr3 110436620 110437346 -107599812 + L1ME4a LINE L1 3332 4085 -2061 242 336 62 0 chr3 110437352 110437498 -107599660 + L1ME4a LINE L1 4960 5114 -1032 24 100 0 0 chr3 110437723 110437803 -107599355 + AT_rich Low_complexity Low_complexity 1 80 0 306 336 73 36 chr3 110438836 110439247 -107597911 + L1ME4a LINE L1 5320 5745 -2063 189 0 0 0 chr3 110439492 110439513 -107597645 + (TTTTTA)n Simple_repeat Simple_repeat 5 25 0 185 23 70 23 chr3 110439597 110439640 -107597518 + (TTA)n Simple_repeat Simple_repeat 1 45 0 842 334 76 7 chr3 110439658 110440092 -107597066 + LTR16B LTR ERVL 1 464 0 307 260 58 10 chr3 110440192 110440296 -107596862 + L1ME4a LINE L1 6012 6120 -1 305 233 14 0 chr3 110440310 110440383 -107596775 + L1MCa LINE L1 1995 2068 -4358 307 320 56 33 chr3 110441365 110441668 -107595490 + L1ME4a LINE L1 5532 5841 -280 3093 156 29 4 chr3 110441721 110442267 -107594891 - L1PA16 LINE L1 -190 5976 5417 362 215 13 0 chr3 110442270 110442349 -107594809 + L1 LINE L1 4520 4599 -1547 1920 189 133 0 chr3 110442349 110442725 -107594433 + MSTB LTR MaLR 1 426 0 827 197 57 0 chr3 110442730 110442923 -107594235 + MSTB-int LTR MaLR 6 209 -1442 5026 197 14 14 chr3 110443052 110444018 -107593140 + MSTB-int LTR MaLR 686 1651 0 1724 205 118 0 chr3 110444018 110444398 -107592760 + MSTB LTR MaLR 1 425 -1 863 131 35 7 chr3 110444404 110444549 -107592609 - L1P4 LINE L1 -606 5560 5412 * 2360 244 10 0 chr3 110444542 110445121 -107592037 + L1MA4 LINE L1 4514 5098 -1048 250 236 100 9 chr3 110445355 110445465 -107591693 + L1ME4a LINE L1 5808 5927 -194 22 35 0 0 chr3 110445596 110445625 -107591533 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr3 110445660 110445690 -107591468 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr3 110445713 110445740 -107591418 + AT_rich Low_complexity Low_complexity 1 27 0 895 200 36 45 chr3 110446490 110446710 -107590448 - MER20 DNA MER1_type -1 218 1 197 330 165 0 chr3 110446768 110446859 -107590299 + MIR SINE MIR 46 151 -111 2544 191 9 28 chr3 110448814 110449342 -107587816 + MLT2B1 LTR ERVL 3 520 0 215 327 113 47 chr3 110449381 110449656 -107587502 + L2 LINE L2 1258 1550 -1764 23 0 0 0 chr3 110450288 110450311 -107586847 + AT_rich Low_complexity Low_complexity 1 23 0 32 43 0 0 chr3 110450758 110450804 -107586354 + AT_rich Low_complexity Low_complexity 1 46 0 204 225 0 0 chr3 110450880 110450920 -107586238 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 30 0 0 0 chr3 110451485 110451515 -107585643 + AT_rich Low_complexity Low_complexity 1 30 0 3843 172 51 33 chr3 110451808 110452671 -107584487 + L1MA4 LINE L1 5227 6106 -194 198 71 0 0 chr3 110454036 110454064 -107583094 + (CA)n Simple_repeat Simple_repeat 1 28 0 315 394 49 25 chr3 110454345 110454713 -107582445 + LTR67 LTR ERVL 121 497 -60 1622 209 30 43 chr3 110456829 110457222 -107579936 + MLT1B LTR MaLR 3 390 0 1464 191 14 23 chr3 110458614 110458959 -107578199 - L1MA6 LINE L1 0 6300 5959 5708 240 67 17 chr3 110458988 110460555 -107576603 - L1M4c LINE L1 -4519 2134 588 1621 207 25 8 chr3 110460665 110461022 -107576136 - MLT1A1 LTR MaLR 0 365 3 7264 42 0 0 chr3 110461710 110462756 -107574402 - L1PA5 LINE L1 -3 6151 5106 264 224 0 41 chr3 110463010 110463157 -107574001 + GA-rich Low_complexity Low_complexity 3 143 0 241 371 61 0 chr3 110463248 110463380 -107573778 + L2 LINE L2 2739 2878 -436 2546 114 8 0 chr3 110464753 110465114 -107572044 - THE1B LTR MaLR 0 364 1 6236 209 37 25 chr3 110465583 110466678 -107570480 - L1M2 LINE L1 -693 5607 4461 297 0 0 0 chr3 110466678 110466711 -107570447 + (TG)n Simple_repeat Simple_repeat 2 34 0 6236 209 37 25 chr3 110466711 110467484 -107569674 - L1M2 LINE L1 -1839 4461 3699 784 281 60 44 chr3 110467585 110467970 -107569188 + MER47B DNA MER2_type 26 416 -2 246 304 203 6 chr3 110468349 110468507 -107568651 + L2 LINE L2 3124 3312 -1 289 252 7 43 chr3 110469006 110469145 -107568013 + (CGGGG)n Simple_repeat Simple_repeat 5 138 0 202 133 0 33 chr3 110469196 110469256 -107567902 + (CGGGGG)n Simple_repeat Simple_repeat 3 60 0 1831 171 38 0 chr3 110469923 110470269 -107566889 + THE1B LTR MaLR 1 359 -5 298 185 76 22 chr3 110474438 110474530 -107562628 - LTR12 LTR ERV1 -617 97 1 1282 19 0 13 chr3 110474577 110474733 -107562425 + L1PA3 LINE L1 6002 6155 0 396 0 0 0 chr3 110474842 110474886 -107562272 + (TG)n Simple_repeat Simple_repeat 2 45 0 414 337 21 70 chr3 110476129 110476414 -107560744 - MLT1I LTR MaLR -34 375 105 21 0 0 0 chr3 110476624 110476645 -107560513 + AT_rich Low_complexity Low_complexity 1 21 0 35 41 0 0 chr3 110478237 110478286 -107558872 + AT_rich Low_complexity Low_complexity 1 49 0 2005 146 3 7 chr3 110478323 110478632 -107558526 + AluSx SINE Alu 1 308 -4 210 191 0 0 chr3 110478678 110478725 -107558433 + (TA)n Simple_repeat Simple_repeat 1 47 0 1353 216 58 32 chr3 110479413 110479760 -107557398 - MLT1A1 LTR MaLR 0 365 10 267 341 11 0 chr3 110479983 110480074 -107557084 - MLT1H LTR MaLR -364 185 94 5097 196 26 23 chr3 110480505 110481014 -107556144 - L1MA5 LINE L1 0 6300 5794 288 53 0 0 chr3 110481014 110481052 -107556106 + (TG)n Simple_repeat Simple_repeat 2 39 0 5097 196 26 23 chr3 110481052 110482347 -107554811 - L1MA5 LINE L1 -506 5794 4468 315 0 0 0 chr3 110482347 110482382 -107554776 + (TG)n Simple_repeat Simple_repeat 2 36 0 5097 196 26 23 chr3 110482382 110482580 -107554578 - L1MA5 LINE L1 -1832 4468 4272 186 150 0 0 chr3 110482616 110482656 -107554502 + (T)n Simple_repeat Simple_repeat 1 40 0 186 113 62 25 chr3 110482730 110482810 -107554348 + T-rich Low_complexity Low_complexity 6 88 0 2058 73 47 13 chr3 110483498 110483828 -107553330 + AluY SINE Alu 1 340 0 712 272 138 30 chr3 110483833 110484296 -107552862 + L1MC4a LINE L1 5370 5882 -1926 41 48 0 0 chr3 110486081 110486143 -107551015 + AT_rich Low_complexity Low_complexity 1 62 0 732 290 71 24 chr3 110486145 110486569 -107550589 - L1MCa LINE L1 -5111 1453 1010 239 316 21 11 chr3 110487090 110487185 -107549973 - L1MCa LINE L1 -5514 532 437 261 342 69 30 chr3 110487544 110487775 -107549383 - L1MCa LINE L1 -5676 369 130 326 311 25 25 chr3 110488311 110488472 -107548686 + L1ME LINE L1 3 163 -5907 553 84 75 28 chr3 110488475 110488582 -107548576 - MER34 LTR ERV1 0 542 431 995 188 35 10 chr3 110488707 110488904 -107548254 + L1PB4 LINE L1 5845 6046 -110 5669 205 163 34 chr3 110488904 110490457 -107546701 + MER52A LTR ERV1 1 1753 -2 274 175 35 0 chr3 110490458 110490515 -107546643 + L1PB4 LINE L1 6042 6100 -56 605 279 29 20 chr3 110490527 110490771 -107546387 + L1M4 LINE L1 4546 4791 -1355 550 79 26 79 chr3 110490897 110491011 -107546147 - AluYb8 SINE Alu -209 109 2 6610 96 10 3 chr3 110492093 110493844 -107543314 - L1PA7 LINE L1 -10 6144 4381 2475 103 2 35 chr3 110493845 110494243 -107542915 + L1P LINE L1 3370 3754 -2392 570 112 20 20 chr3 110494366 110494464 -107542694 - AluSg SINE Alu -212 98 1 1057 287 57 30 chr3 110494531 110494991 -107542167 - L1MCc LINE L1 -5138 1285 814 197 164 0 18 chr3 110495064 110495119 -107542039 + T-rich Low_complexity Low_complexity 2 55 0 190 164 36 0 chr3 110495290 110495345 -107541813 + GA-rich Low_complexity Low_complexity 1 57 0 23 33 0 0 chr3 110496205 110496235 -107540923 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 110496401 110496422 -107540736 + AT_rich Low_complexity Low_complexity 1 21 0 665 79 32 48 chr3 110496805 110496931 -107540227 - L1P LINE L1 -1783 4363 4240 2959 99 7 0 chr3 110497071 110497505 -107539653 - L1P LINE L1 -992 5154 4718 298 340 98 14 chr3 110497749 110497964 -107539194 - MIR SINE MIR -1 261 29 9669 103 19 1 chr3 110498052 110499538 -107537620 + L1P LINE L1 3699 5210 -936 355 326 18 13 chr3 110499666 110499893 -107537265 - L1MEc LINE L1 -2549 3991 3764 1900 257 31 75 chr3 110500084 110500314 -107536844 - L1MEc LINE L1 -2790 3750 3512 3620 182 31 1 chr3 110500314 110501078 -107536080 - L1MA6 LINE L1 0 6300 5514 1900 257 31 75 chr3 110501078 110502000 -107535158 - L1MEc LINE L1 -3028 3512 2648 505 242 92 16 chr3 110502039 110502266 -107534892 - L1MEc LINE L1 -3867 2673 2441 1648 199 20 60 chr3 110502613 110503016 -107534142 + MLT1B LTR MaLR 1 387 -3 2781 233 106 6 chr3 110503327 110504217 -107532941 - L1 LINE L1 -2405 4443 3465 576 169 0 0 chr3 110504324 110504454 -107532704 + C-rich Low_complexity Low_complexity 1 130 0 209 230 14 27 chr3 110504477 110504551 -107532607 + (CCCG)n Simple_repeat Simple_repeat 2 74 0 * 296 306 0 0 chr3 110504502 110504623 -107532535 + C-rich Low_complexity Low_complexity 1 121 0 2085 258 20 9 chr3 110504861 110505228 -107531930 - L1 LINE L1 -3393 3455 3094 915 28 0 0 chr3 110505228 110505337 -107531821 - L1PA3 LINE L1 0 6155 6047 2085 258 20 9 chr3 110505337 110505750 -107531408 - L1 LINE L1 -3754 3094 2667 186 133 0 0 chr3 110506556 110506586 -107530572 + (TTA)n Simple_repeat Simple_repeat 2 31 0 312 318 90 69 chr3 110507473 110507863 -107529295 + L1MEc LINE L1 2145 2542 -4580 318 314 102 28 chr3 110508107 110508362 -107528796 + L1MEc LINE L1 2853 3126 -3996 2488 41 3 0 chr3 110508369 110508664 -107528494 + AluY SINE Alu 11 306 -5 244 318 126 30 chr3 110508761 110509230 -107527928 + L1MEc LINE L1 3173 3686 -3255 641 244 115 37 chr3 110509265 110509535 -107527623 + L1MEc LINE L1 19 309 -6114 1754 268 83 31 chr3 110510009 110510893 -107526265 + L1ME1 LINE L1 5222 6162 -4 369 263 126 22 chr3 110511034 110511312 -107525846 + L1MEc LINE L1 3717 4023 -2918 760 284 99 32 chr3 110511431 110511998 -107525160 - L1ME1 LINE L1 -3 6163 5559 308 258 54 11 chr3 110512080 110512173 -107524985 + MIR SINE MIR 89 185 -77 22 35 0 0 chr3 110512466 110512495 -107524663 + AT_rich Low_complexity Low_complexity 1 29 0 732 281 104 35 chr3 110512863 110513429 -107523729 - L1ME1 LINE L1 -3 6163 5559 308 258 54 11 chr3 110513512 110513605 -107523553 + MIR SINE MIR 89 185 -77 6391 142 32 10 chr3 110514496 110515605 -107521553 + Tigger3b DNA MER2_type 98 1230 -1 339 312 43 36 chr3 110515731 110515869 -107521289 + MER5B DNA MER1_type 1 139 -39 204 125 0 0 chr3 110516673 110516705 -107520453 + (GGGA)n Simple_repeat Simple_repeat 3 34 0 21 36 0 0 chr3 110516730 110516758 -107520400 + AT_rich Low_complexity Low_complexity 1 28 0 391 304 37 29 chr3 110517130 110517373 -107519785 + AluJo SINE Alu 1 245 -57 384 273 12 81 chr3 110517524 110517685 -107519473 + L1MEc LINE L1 4491 4640 -2301 7198 52 8 0 chr3 110517745 110519230 -107517928 - L1PA5 LINE L1 -7 6147 4657 1301 56 33 88 chr3 110519891 110520106 -107517052 + AluY SINE Alu 101 303 -8 1354 240 68 14 chr3 110521428 110521794 -107515364 - MLT1B LTR MaLR -2 388 3 1620 246 119 4 chr3 110521831 110522283 -107514875 + MLT1D LTR MaLR 1 504 -1 2567 179 8 15 chr3 110522575 110523049 -107514109 + MER39 LTR ERV1 237 707 0 29 0 0 0 chr3 110523870 110523899 -107513259 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 110523948 110523969 -107513189 + AT_rich Low_complexity Low_complexity 1 21 0 519 261 0 36 chr3 110524353 110524491 -107512667 + MLT1A1 LTR MaLR 13 145 -220 438 333 21 70 chr3 110525044 110525329 -107511829 - MLT1I LTR MaLR -34 375 105 22 0 0 0 chr3 110525536 110525558 -107511600 + AT_rich Low_complexity Low_complexity 1 22 0 1169 120 30 77 chr3 110525757 110525991 -107511167 - L1M2 LINE L1 -526 5774 5552 24 85 0 0 chr3 110528772 110528831 -107508327 + AT_rich Low_complexity Low_complexity 1 59 0 385 198 16 0 chr3 110528991 110529112 -107508046 + (TA)n Simple_repeat Simple_repeat 1 123 0 328 272 5 49 chr3 110529255 110529439 -107507719 + C-rich Low_complexity Low_complexity 5 180 0 181 329 57 0 chr3 110529742 110529812 -107507346 + MIR SINE MIR 69 142 -66 1987 146 33 30 chr3 110529818 110530181 -107506977 + THE1B LTR MaLR 1 364 0 1421 183 13 10 chr3 110530441 110530742 -107506416 + L1PA15 LINE L1 4972 5273 -873 4077 131 17 11 chr3 110530751 110531399 -107505759 + L1PA15 LINE L1 5407 6058 -107 245 176 0 59 chr3 110531525 110531593 -107505565 + L1MC4 LINE L1 6640 6703 -1339 21 0 0 0 chr3 110531624 110531645 -107505513 + AT_rich Low_complexity Low_complexity 1 21 0 304 220 10 30 chr3 110531852 110531952 -107505206 + L1PA13 LINE L1 6066 6163 0 246 128 0 0 chr3 110533106 110533145 -107504013 - MLT2B1 LTR ERVL -10 510 472 61 64 0 0 chr3 110533158 110533268 -107503890 + AT_rich Low_complexity Low_complexity 1 110 0 670 207 16 5 chr3 110533279 110533424 -107503734 + MLT2B1 LTR ERVL 331 479 -36 23 0 0 0 chr3 110533521 110533544 -107503614 + AT_rich Low_complexity Low_complexity 1 23 0 306 265 99 38 chr3 110533610 110533821 -107503337 - L1M4 LINE L1 -3583 2563 2340 31 58 0 0 chr3 110533921 110533973 -107503185 + AT_rich Low_complexity Low_complexity 1 52 0 2258 87 0 0 chr3 110534104 110534391 -107502767 + AluSc SINE Alu 5 291 -18 21 36 0 0 chr3 110534391 110534419 -107502739 + AT_rich Low_complexity Low_complexity 1 28 0 1355 114 10 0 chr3 110535641 110535842 -107501316 + MER11B LTR ERVK 1 203 -1033 281 240 13 0 chr3 110536771 110536846 -107500312 - MIR SINE MIR -68 140 65 24 0 0 0 chr3 110538960 110538984 -107498174 + AT_rich Low_complexity Low_complexity 1 24 0 1942 175 33 22 chr3 110539003 110539363 -107497795 + THE1B LTR MaLR 1 364 0 10184 104 64 5 chr3 110539363 110540854 -107496304 + THE1B-int LTR MaLR 1 1579 -1 1811 142 90 38 chr3 110540855 110541201 -107495957 + THE1B LTR MaLR 1 364 0 246 219 0 0 chr3 110541407 110541471 -107495687 + (TA)n Simple_repeat Simple_repeat 2 65 0 183 246 0 0 chr3 110542011 110542068 -107495090 + GA-rich Low_complexity Low_complexity 2 58 0 23 33 0 0 chr3 110542934 110542964 -107494194 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr3 110544539 110544561 -107492597 + AT_rich Low_complexity Low_complexity 1 22 0 297 240 27 13 chr3 110545485 110545560 -107491598 - MER21B LTR ERV1 -764 99 24 21 0 0 0 chr3 110545563 110545584 -107491574 + AT_rich Low_complexity Low_complexity 1 21 0 498 229 22 89 chr3 110545606 110545785 -107491373 + MIR SINE MIR 72 238 -24 22 56 0 0 chr3 110545786 110545822 -107491336 + AT_rich Low_complexity Low_complexity 1 36 0 204 287 20 0 chr3 110545999 110546100 -107491058 + (TA)n Simple_repeat Simple_repeat 1 103 0 1814 132 21 14 chr3 110546161 110546487 -107490671 + AluSx SINE Alu 1 328 0 24 0 0 0 chr3 110547201 110547225 -107489933 + AT_rich Low_complexity Low_complexity 1 24 0 490 49 0 0 chr3 110547228 110547289 -107489869 + tRNA-Glu-GAG tRNA tRNA 15 75 0 25 90 0 0 chr3 110547652 110547719 -107489439 + AT_rich Low_complexity Low_complexity 1 67 0 415 202 148 39 chr3 110548221 110548313 -107488845 + AluJb SINE Alu 5 86 -216 183 42 0 0 chr3 110548313 110548337 -107488821 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 415 202 148 39 chr3 110548337 110548476 -107488682 + AluJb SINE Alu 86 301 -1 1188 327 24 48 chr3 110548564 110549444 -107487714 + ERVL LTR ERVL 3991 4930 -834 1306 220 123 40 chr3 110549870 110550274 -107486884 - MLT1D LTR MaLR -36 469 1 25 51 0 0 chr3 110550621 110550660 -107486498 + AT_rich Low_complexity Low_complexity 1 39 0 1552 147 45 162 chr3 110550705 110551191 -107485967 + Tigger2 DNA MER2_type 2 2718 0 28 0 0 0 chr3 110552756 110552784 -107484374 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 110552847 110552868 -107484290 + AT_rich Low_complexity Low_complexity 1 21 0 289 175 8 119 chr3 110553918 110554044 -107483114 + L1ME2 LINE L1 3825 3936 -2210 616 269 82 41 chr3 110554104 110554419 -107482739 + L1ME2 LINE L1 4085 4445 -1701 22 0 0 0 chr3 110554419 110554441 -107482717 + AT_rich Low_complexity Low_complexity 1 22 0 616 269 82 41 chr3 110554441 110554542 -107482616 + L1ME2 LINE L1 4445 4540 -1606 1918 151 0 0 chr3 110554604 110554896 -107482262 - AluSx SINE Alu -20 292 1 269 225 42 84 chr3 110554901 110555043 -107482115 + L1ME2 LINE L1 4682 4817 -1329 651 260 84 59 chr3 110555071 110555444 -107481714 + MER57A LTR ERV1 20 403 0 935 274 79 16 chr3 110555444 110555998 -107481160 + L1ME2 LINE L1 4815 5403 -743 596 284 134 65 chr3 110556069 110556590 -107480568 + LTR50 LTR ERVL 87 643 -152 1815 228 72 93 chr3 110556743 110556857 -107480301 + L1ME2 LINE L1 5407 5522 -642 1373 203 13 39 chr3 110556857 110556978 -107480180 + AluJo SINE Alu 1 124 -188 309 26 0 0 chr3 110556978 110557016 -107480142 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1373 203 13 39 chr3 110557016 110557204 -107479954 + AluJo SINE Alu 124 302 -10 1815 228 72 93 chr3 110557204 110557862 -107479296 + L1ME2 LINE L1 5522 6163 -1 747 179 125 21 chr3 110558069 110558309 -107478849 + Charlie1 DNA MER1_type 2497 2761 0 261 264 58 25 chr3 110558355 110558476 -107478682 + LTR68 LTR ERV1 7 131 -609 291 170 0 0 chr3 110558862 110558909 -107478249 - MSTA LTR MaLR 0 428 382 2932 249 37 22 chr3 110559210 110560253 -107476905 - L1MC3 LINE L1 -745 5401 4972 1974 147 0 0 chr3 110560253 110560553 -107476605 - AluY SINE Alu -11 300 1 2932 249 37 22 chr3 110560553 110560979 -107476179 - L1MC3 LINE L1 -1174 4972 4554 712 266 30 0 chr3 110560984 110561187 -107475971 + MER74A LTR ERVL 350 558 0 27 0 0 0 chr3 110561639 110561666 -107475492 + AT_rich Low_complexity Low_complexity 1 27 0 832 366 24 49 chr3 110561725 110562353 -107474805 + L1PA16 LINE L1 -593 18 -6175 10743 259 46 33 chr3 110563211 110567606 -107469552 + L1PA16 LINE L1 802 5220 -983 2177 70 0 78 chr3 110567606 110567937 -107469221 - AluY SINE Alu -6 305 1 7116 49 22 2 chr3 110567954 110569207 -107467951 - L1PA5 LINE L1 -1 6153 4886 26 0 0 0 chr3 110570006 110570032 -107467126 + AT_rich Low_complexity Low_complexity 1 26 0 647 355 9 0 chr3 110570197 110570417 -107466741 - MIR SINE MIR -39 223 2 630 270 65 27 chr3 110571212 110571397 -107465761 - MER58C DNA MER1_type -22 193 2 34 55 0 0 chr3 110572085 110572140 -107465018 + AT_rich Low_complexity Low_complexity 1 55 0 237 180 0 0 chr3 110572914 110572964 -107464194 + (TA)n Simple_repeat Simple_repeat 2 51 0 18133 182 19 7 chr3 110573761 110577282 -107459876 + L1P LINE L1 1431 4992 -1154 2011 124 3 10 chr3 110578466 110578780 -107458378 + AluSx SINE Alu 1 312 0 202 424 25 17 chr3 110578830 110578948 -107458210 + MIR3 SINE MIR 39 157 -51 384 58 10 240 chr3 110578965 110579015 -107458143 - MADE1 DNA Mariner 0 80 65 2820 6 0 0 chr3 110579015 110579326 -107457832 + AluYa5 SINE Alu 1 311 0 384 58 10 240 chr3 110579326 110579379 -107457779 - MADE1 DNA Mariner -15 65 1 3789 131 3 11 chr3 110580349 110580996 -107456162 - L1P LINE L1 -1155 4991 4350 * 4521 173 36 15 chr3 110580995 110581976 -107455182 + L1PA16 LINE L1 5213 6217 -6 912 333 64 7 chr3 110583116 110583522 -107453636 + LTR16A LTR ERVL 22 450 0 282 100 29 29 chr3 110583562 110583632 -107453526 + T-rich Low_complexity Low_complexity 6 75 0 888 294 44 18 chr3 110583655 110584039 -107453119 + HERV16 LTR ERVL 125 518 -4478 4597 249 90 43 chr3 110584627 110586320 -107450838 - L1MDa LINE L1 -4734 1806 34 202 114 29 0 chr3 110586534 110586569 -107450589 + CT-rich Low_complexity Low_complexity 1 36 0 2233 146 68 11 chr3 110586693 110587098 -107450060 - MSTB LTR MaLR 0 405 1 7556 207 41 3 chr3 110587102 110588685 -107448473 - MSTB-int LTR MaLR -4 1647 5 1377 188 0 0 chr3 110588711 110588967 -107448191 - MSTA-int LTR MaLR -1395 256 1 1919 173 78 8 chr3 110588969 110589367 -107447791 - MSTA LTR MaLR -2 426 1 1560 227 81 35 chr3 110589655 110590136 -107447022 - MLT1D LTR MaLR 0 505 3 679 281 96 59 chr3 110590573 110590929 -107446229 - MLT1A2 LTR MaLR -5 369 1 2021 170 3 0 chr3 110591412 110591777 -107445381 + L1PB1 LINE L1 5782 6147 -4 6218 122 11 2 chr3 110591793 110592766 -107444392 + L1MA2 LINE L1 5323 6304 0 1013 315 91 12 chr3 110592889 110593065 -107444093 + L1ME3A LINE L1 5259 5420 -750 393 70 0 0 chr3 110593065 110593122 -107444036 + (CA)n Simple_repeat Simple_repeat 1 57 0 1013 315 91 12 chr3 110593122 110593538 -107443620 + L1ME3A LINE L1 5420 5898 -272 1200 248 8 48 chr3 110593538 110593893 -107443265 + MLT2C1 LTR ERVL 1 341 -56 25 0 0 0 chr3 110593919 110593944 -107443214 + AT_rich Low_complexity Low_complexity 1 25 0 201 147 0 0 chr3 110593953 110593987 -107443171 + (CA)n Simple_repeat Simple_repeat 2 35 0 551 274 57 41 chr3 110594038 110594283 -107442875 + L1ME3A LINE L1 5913 6161 -9 2105 103 3 0 chr3 110594513 110594822 -107442336 - AluSp SINE Alu 0 310 1 315 304 82 30 chr3 110594848 110594983 -107442175 - LTR50 LTR ERVL -629 166 25 188 250 36 0 chr3 110595020 110595076 -107442082 + MIR SINE MIR 174 231 -31 351 319 71 16 chr3 110595574 110595756 -107441402 - MLT1I LTR MaLR -26 383 192 21 0 0 0 chr3 110596015 110596036 -107441122 + AT_rich Low_complexity Low_complexity 1 21 0 497 305 6 6 chr3 110596205 110596369 -107440789 + L1MA9 LINE L1 11 174 -5781 7818 256 57 21 chr3 110596384 110597693 -107439465 + L1MA9 LINE L1 283 1543 -4491 2328 65 0 16 chr3 110597693 110598002 -107439156 + AluY SINE Alu 1 304 -7 415 54 0 0 chr3 110598011 110598067 -107439091 + L1PA5 LINE L1 6099 6154 0 7818 256 57 21 chr3 110598067 110600967 -107436191 + L1MA9 LINE L1 1550 4460 -1574 1662 208 58 13 chr3 110600975 110601354 -107435804 + L1MA9 LINE L1 5286 5681 -519 12357 147 38 11 chr3 110601381 110603535 -107433623 - Tigger1 DNA MER2_type 0 2418 207 426 165 59 0 chr3 110603551 110603636 -107433522 - Tigger1 DNA MER2_type -2327 91 2 2207 194 24 58 chr3 110603661 110604211 -107432947 + L1MA9 LINE L1 5670 6200 0 1592 258 108 47 chr3 110604396 110605079 -107432079 - MER50 LTR ERV1 0 734 10 314 360 42 0 chr3 110606175 110606364 -107430794 - L1M4 LINE L1 -1621 4525 4329 375 348 36 25 chr3 110606420 110606696 -107430462 - L1M4 LINE L1 -1923 4223 3945 309 297 55 21 chr3 110606799 110606944 -107430214 - L1M4 LINE L1 -2215 3931 3782 582 234 120 0 chr3 110607101 110607268 -107429890 + MER34C LTR ERV1 31 217 -368 245 220 0 0 chr3 110607297 110607356 -107429802 + LTR48 LTR ERV1 379 437 -350 251 125 42 0 chr3 110607356 110607404 -107429754 + T-rich Low_complexity Low_complexity 4 53 0 362 214 151 16 chr3 110607455 110607642 -107429516 + LTR48 LTR ERV1 437 539 -3 303 286 11 0 chr3 110607743 110607834 -107429324 + MIR SINE MIR 144 235 -27 568 349 62 36 chr3 110607851 110608301 -107428857 - L2 LINE L2 -2127 1187 726 481 143 20 20 chr3 110608315 110608413 -107428745 + MER4A LTR ERV1 1 98 -566 1587 178 18 19 chr3 110608413 110608759 -107428399 + MER4A LTR ERV1 261 664 0 2137 139 318 13 chr3 110608762 110609288 -107427870 + MER4A-int LTR ERV1 1 686 -5912 1332 236 66 7 chr3 110609450 110609785 -107427373 + MER4A-int LTR ERV1 1852 2527 -3736 5424 122 85 18 chr3 110609799 110610695 -107426463 + PABL_A-int LTR ERV1 194 1149 -5609 315 0 0 0 chr3 110610695 110610730 -107426428 + (TG)n Simple_repeat Simple_repeat 2 36 0 2988 138 90 66 chr3 110610749 110611435 -107425723 + PABL_A-int LTR ERV1 947 1649 -3366 1258 146 103 0 chr3 110611436 110611669 -107425489 - LTR8 LTR ERV1 -434 257 1 3160 163 121 15 chr3 110611669 110612524 -107424634 + PABL_A-int LTR ERV1 2737 3681 -2917 * 5601 114 57 25 chr3 110612523 110613507 -107423651 + PABL_A-int LTR ERV1 3837 4851 -1747 763 169 15 15 chr3 110613507 110613637 -107423521 + MER4A LTR ERV1 535 664 0 470 315 86 45 chr3 110613846 110614287 -107422871 - L1M4 LINE L1 -3546 2600 2142 902 232 45 5 chr3 110614413 110614633 -107422525 - L1MC1 LINE L1 -13 6320 6092 852 213 7 0 chr3 110614635 110614790 -107422368 - FRAM SINE Alu -23 153 1 1067 158 0 0 chr3 110614812 110614976 -107422182 + AluSg/x SINE Alu 136 299 -13 1721 174 19 16 chr3 110615149 110615470 -107421688 - Tigger2 DNA MER2_type -10 2708 2387 3562 74 20 6 chr3 110615618 110616106 -107421052 - L1PA13 LINE L1 -294 5874 5380 2057 84 27 0 chr3 110616106 110616401 -107420757 + L1PA13 LINE L1 5858 6162 -1 381 312 91 30 chr3 110616522 110616983 -107420175 + L1M4 LINE L1 2962 3450 -2696 357 220 74 136 chr3 110618617 110619022 -107418136 + L1ME4a LINE L1 5701 6080 -41 31 44 0 0 chr3 110620107 110620152 -107417006 + AT_rich Low_complexity Low_complexity 1 45 0 231 190 25 13 chr3 110620209 110620288 -107416870 + CT-rich Low_complexity Low_complexity 2 81 0 195 42 0 0 chr3 110620699 110620723 -107416435 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 2519 234 37 7 chr3 110622202 110622795 -107414363 - MER90 LTR ERV1 -2 612 2 192 211 0 0 chr3 110622796 110622834 -107414324 + L2 LINE L2 508 545 -2769 2125 113 3 0 chr3 110623464 110623795 -107413363 - AluSp SINE Alu 0 332 1 1879 185 42 37 chr3 110624005 110624555 -107412603 - MLT2A2 LTR ERVL 0 554 1 208 121 0 0 chr3 110624715 110624748 -107412410 + (CA)n Simple_repeat Simple_repeat 1 33 0 26 50 0 0 chr3 110625662 110625702 -107411456 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr3 110625745 110625773 -107411385 + AT_rich Low_complexity Low_complexity 1 28 0 2062 115 0 3 chr3 110625773 110626061 -107411097 - AluSg SINE Alu -23 287 1 352 322 79 40 chr3 110626420 110626647 -107410511 + L1 LINE L1 4745 4980 -1166 968 64 0 0 chr3 110627182 110627307 -107409851 - L1PA3 LINE L1 -3 6152 6028 2285 99 0 0 chr3 110627416 110627732 -107409426 + AluSx SINE Alu 3 318 0 2477 165 23 27 chr3 110629767 110630247 -107406911 + MER34 LTR ERV1 1 478 -64 21 0 0 0 chr3 110632232 110632253 -107404905 + AT_rich Low_complexity Low_complexity 1 21 0 1350 150 104 1 chr3 110632656 110632965 -107404193 + Tigger5 DNA MER2_type 1 2322 -1 463 290 118 43 chr3 110633156 110633855 -107403303 - L1MEc LINE L1 -4485 2340 1429 333 339 36 50 chr3 110633877 110634334 -107402824 - L1MEc LINE L1 -5142 1492 1086 6966 60 3 5 chr3 110635208 110636232 -107400926 + L1PA7 LINE L1 5120 6142 -12 29 0 0 0 chr3 110636248 110636277 -107400881 + AT_rich Low_complexity Low_complexity 1 29 0 215 176 0 59 chr3 110636789 110636857 -107400301 + T-rich Low_complexity Low_complexity 2 65 0 1802 256 24 20 chr3 110636971 110637472 -107399686 - L1MD2 LINE L1 -3 6356 5854 324 322 28 40 chr3 110638170 110638347 -107398811 + GA-rich Low_complexity Low_complexity 1 175 0 * 349 414 0 0 chr3 110638251 110638355 -107398803 + polypurine Low_complexity Low_complexity 3 106 0 5632 206 97 10 chr3 110638402 110638800 -107398358 - L1P5 LINE L1 -363 6504 6142 2248 91 0 0 chr3 110638800 110639087 -107398071 - AluSc SINE Alu -12 297 11 5632 206 97 10 chr3 110639087 110642080 -107395078 - L1P5 LINE L1 -725 6142 2617 2839 161 68 12 chr3 110642083 110642587 -107394571 - LTR9 LTR ERV1 -80 532 1 4693 133 7 11 chr3 110642587 110643306 -107393852 - HUERS-P3 LTR ERV1 -1 8918 8203 9460 199 130 7 chr3 110643306 110645593 -107391565 - L1P5 LINE L1 -4289 2574 6 11532 222 39 27 chr3 110645608 110645947 -107391211 - L1 LINE L1 -820 6745 6412 180 0 0 0 chr3 110645947 110645967 -107391191 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 11532 222 39 27 chr3 110645967 110645980 -107391178 - L1 LINE L1 -1153 6412 6401 1702 167 0 4 chr3 110645980 110646244 -107390914 - AluSx SINE Alu -49 263 1 11532 222 39 27 chr3 110646244 110652084 -107385074 - L1 LINE L1 -1164 6401 115 234 0 0 0 chr3 110652084 110652110 -107385048 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 11532 222 39 27 chr3 110652110 110652212 -107384946 - L1 LINE L1 -7450 115 16 1934 162 93 18 chr3 110652261 110652432 -107384726 + MSTA LTR MaLR 3 160 -268 503 103 26 0 chr3 110652432 110652510 -107384648 - MADE1 DNA Mariner 0 80 1 1934 162 93 18 chr3 110652510 110652734 -107384424 + MSTA LTR MaLR 160 428 0 262 327 13 0 chr3 110652734 110652887 -107384271 - L1MEc LINE L1 -967 5248 5094 314 253 99 54 chr3 110653043 110653264 -107383894 - L1MEc LINE L1 -1339 4876 4646 408 313 32 8 chr3 110653287 110653533 -107383625 - L1MEc LINE L1 -2368 3847 3596 24 77 0 0 chr3 110653563 110653615 -107383543 + AT_rich Low_complexity Low_complexity 1 52 0 721 287 110 39 chr3 110653814 110654828 -107382330 - L1MEc LINE L1 -3011 3204 2153 795 262 136 55 chr3 110655320 110655888 -107381270 - L1ME3 LINE L1 -172 5990 5377 7204 244 88 7 chr3 110655972 110657734 -107379424 + L1MA4A LINE L1 4 1908 -4941 29025 133 11 54 chr3 110657741 110659174 -107377984 - L1PA7 LINE L1 -11 6143 4650 246 32 0 0 chr3 110659174 110659205 -107377953 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 29025 133 11 54 chr3 110659205 110664191 -107372967 - L1PA7 LINE L1 -1504 4650 9 9181 193 28 17 chr3 110664201 110667151 -107370007 + L1MA4A LINE L1 1900 6728 -277 741 180 18 0 chr3 110667153 110667320 -107369838 + L1MA4A LINE L1 6836 7005 0 3106 156 67 20 chr3 110667359 110668005 -107369153 - L1MA3 LINE L1 0 6305 5630 2211 171 46 141 chr3 110668006 110668751 -107368407 + LTR8A LTR ERV1 18 727 0 284 220 22 44 chr3 110669004 110669095 -107368063 - MER4D LTR ERV1 -31 872 784 23 54 0 0 chr3 110670919 110670956 -107366202 + AT_rich Low_complexity Low_complexity 1 37 0 250 363 56 31 chr3 110671141 110671161 -107365997 - MIR SINE MIR -96 166 148 3969 166 67 3 chr3 110671161 110671895 -107365263 - LTR39 LTR ERV1 -2 781 1 250 363 56 31 chr3 110671895 110672034 -107365124 - MIR SINE MIR -114 148 3 1519 211 7 3 chr3 110672248 110672552 -107364606 + AluJo SINE Alu 1 305 -7 1248 200 9 64 chr3 110672620 110672950 -107364208 + AluJb SINE Alu 1 312 0 339 214 28 6 chr3 110673729 110673817 -107363341 - MIR SINE MIR -46 162 74 1437 150 86 64 chr3 110673829 110674188 -107362970 - THE1C LTR MaLR -8 367 1 579 333 68 0 chr3 110674528 110674762 -107362396 - MIR SINE MIR 0 262 13 2125 118 0 29 chr3 110674859 110675173 -107361985 + AluSx SINE Alu 1 305 -7 1562 185 27 114 chr3 110675487 110675969 -107361189 + MER65A LTR ERV1 1 440 -5 862 276 88 62 chr3 110675981 110676594 -107360564 + MER65A-int LTR ERV1 11 639 -4232 390 248 14 91 chr3 110676827 110677042 -107360116 + MER65A-int LTR ERV1 651 946 -4017 252 291 74 27 chr3 110677088 110677160 -107359998 + LTR57-int LTR ERVL 392 546 -4797 256 197 0 66 chr3 110677160 110677236 -107359922 + MER65A-int LTR ERV1 923 993 -3878 682 214 101 100 chr3 110677337 110677520 -107359638 + MER65A-int LTR ERV1 1293 1474 -3397 1841 132 48 0 chr3 110677520 110677792 -107359366 - AluSx SINE Alu -8 304 20 682 214 101 100 chr3 110677792 110678180 -107358978 + MER65A-int LTR ERV1 1474 1953 -2918 1912 210 92 92 chr3 110678203 110678897 -107358261 + LTR8A LTR ERV1 34 727 0 292 207 24 37 chr3 110678952 110679034 -107358124 + HUERS-P3b LTR ERV1 1517 1597 -3339 458 231 56 0 chr3 110679042 110679185 -107357973 + HUERS-P3b LTR ERV1 2290 2440 -2431 816 187 45 154 chr3 110679386 110680133 -107357025 + HUERS-P3b LTR ERV1 1607 3481 -2560 22 35 0 0 chr3 110680229 110680258 -107356900 + AT_rich Low_complexity Low_complexity 1 29 0 216 0 0 0 chr3 110680424 110680448 -107356710 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2136 95 7 0 chr3 110680451 110680724 -107356434 - AluSc SINE Alu -32 277 3 3315 126 14 8 chr3 110680740 110681248 -107355910 + MER9 LTR ERVK 1 511 0 4166 113 40 18 chr3 110681248 110681901 -107355257 + HERVK9 LTR ERVK 1 667 -5249 * 30461 87 3 0 chr3 110681897 110685895 -107351263 + HERVK9 LTR ERVK 1626 5634 -282 1750 141 38 41 chr3 110685920 110686275 -107350883 + HERVK9 LTR ERVK 5635 5916 0 3109 136 26 6 chr3 110686275 110686776 -107350382 + MER9 LTR ERVK 1 511 0 636 158 33 57 chr3 110686780 110686950 -107350208 + HUERS-P3b LTR ERV1 3585 4308 -2368 677 179 22 38 chr3 110687077 110687261 -107349897 + HUERS-P3b LTR ERV1 3732 3912 -2686 195 100 0 0 chr3 110687262 110687292 -107349866 + (T)n Simple_repeat Simple_repeat 1 30 0 894 231 68 95 chr3 110687393 110687970 -107349188 + HUERS-P3b LTR ERV1 4032 5143 -1455 591 134 17 47 chr3 110688105 110688233 -107348925 + LTR9B LTR ERV1 4 124 -488 7725 208 35 52 chr3 110688241 110688817 -107348341 + HUERS-P3b LTR ERV1 70 655 -6763 309 26 0 0 chr3 110688817 110688855 -107348303 + (TC)n Simple_repeat Simple_repeat 1 38 0 7725 208 35 52 chr3 110688855 110690135 -107347023 + HUERS-P3b LTR ERV1 655 1882 -5536 3747 86 25 0 chr3 110690133 110690644 -107346514 + HUERS-P3b LTR ERV1 2115 2638 -4780 * 2356 205 32 2 chr3 110690644 110691078 -107346080 - LTR8 LTR ERV1 -244 447 1 7044 119 15 22 chr3 110691081 110692212 -107344946 + HUERS-P3 LTR ERV1 3076 4198 -3220 16477 127 12 3 chr3 110692212 110694704 -107342454 + HUERS-P3 LTR ERV1 4417 6932 -486 402 57 0 0 chr3 110694704 110694757 -107342401 + (CTATT)n Simple_repeat Simple_repeat 2 54 0 16477 127 12 3 chr3 110694757 110694772 -107342386 + HUERS-P3 LTR ERV1 6932 6945 -473 669 205 22 10 chr3 110695071 110695225 -107341933 + HUERS-P3 LTR ERV1 6828 8812 -107 348 77 0 0 chr3 110695354 110695406 -107341752 + (TA)n Simple_repeat Simple_repeat 2 53 0 1482 269 72 4 chr3 110695936 110696405 -107340753 + HUERS-P3 LTR ERV1 4260 4760 -111 1599 193 63 39 chr3 110696471 110696902 -107340256 + MER65A LTR ERV1 5 445 0 5299 183 35 3 chr3 110697715 110699858 -107337300 + L1PB1 LINE L1 6 2438 -4425 * 9229 200 7 19 chr3 110699840 110702069 -107335089 + L1PB1 LINE L1 3815 6069 -798 198 0 0 0 chr3 110702069 110702091 -107335067 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 9229 200 7 19 chr3 110702091 110702579 -107334579 + L1PB1 LINE L1 6069 6501 -366 261 0 0 0 chr3 110702579 110702608 -107334550 + (TG)n Simple_repeat Simple_repeat 2 30 0 1858 139 0 0 chr3 110702623 110702917 -107334241 + L1PB1 LINE L1 6572 6865 -2 2194 65 3 0 chr3 110702917 110703224 -107333934 - PABL_A-int LTR ERV1 -3358 1657 1350 483 263 45 58 chr3 110703362 110703518 -107333640 + MER63A DNA MER1_type 52 205 -5 190 271 51 0 chr3 110704930 110704989 -107332169 - L2 LINE L2 0 3313 3252 2542 208 95 2 chr3 110705037 110705575 -107331583 + LTR69 LTR ERVL 1 588 0 25 65 0 0 chr3 110705721 110705767 -107331391 + AT_rich Low_complexity Low_complexity 1 46 0 611 244 58 14 chr3 110705907 110706274 -107330884 + MLT1E1 LTR MaLR 3 407 -217 461 303 66 53 chr3 110706270 110706650 -107330508 + Charlie7 DNA MER1_type 298 682 -1930 * 1152 279 40 15 chr3 110706831 110707157 -107330001 - MLT1G LTR MaLR -2 588 255 1666 217 71 7 chr3 110707256 110707662 -107329496 - MSTB1 LTR MaLR 0 432 1 376 346 44 31 chr3 110707682 110707910 -107329248 - L2 LINE L2 -773 2541 2311 232 274 24 0 chr3 110707941 110708025 -107329133 - L1MC4 LINE L1 -1341 6701 6616 1340 294 96 28 chr3 110708035 110708579 -107328579 - L2 LINE L2 -1018 2296 1716 932 203 123 44 chr3 110708621 110708937 -107328221 + Charlie7 DNA MER1_type 1454 1794 -818 436 323 132 17 chr3 110709648 110709883 -107327275 + MIR SINE MIR 1 262 0 1453 182 48 45 chr3 110710219 110710593 -107326565 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr3 110710964 110710987 -107326171 + AT_rich Low_complexity Low_complexity 1 23 0 31 44 0 0 chr3 110711097 110711142 -107326016 + AT_rich Low_complexity Low_complexity 1 45 0 721 288 61 48 chr3 110711157 110711616 -107325542 - MLT1C LTR MaLR -2 465 1 34 0 0 0 chr3 110711763 110711797 -107325361 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr3 110712490 110712511 -107324647 + AT_rich Low_complexity Low_complexity 1 21 0 434 242 140 13 chr3 110713689 110713846 -107323312 - MER5B DNA MER1_type 0 178 2 206 250 0 0 chr3 110713889 110713925 -107323233 - MER5B DNA MER1_type -17 161 126 228 284 136 34 chr3 110714476 110714564 -107322594 + MIR3 SINE MIR 15 111 -97 253 222 14 28 chr3 110715075 110715147 -107322011 + (TCTA)n Simple_repeat Simple_repeat 1 71 0 24 53 0 0 chr3 110716431 110716469 -107320689 + AT_rich Low_complexity Low_complexity 1 38 0 24 32 0 0 chr3 110716710 110716741 -107320417 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr3 110717078 110717099 -107320059 + AT_rich Low_complexity Low_complexity 1 21 0 216 135 0 0 chr3 110717840 110717877 -107319281 + (TA)n Simple_repeat Simple_repeat 1 37 0 2369 219 8 2 chr3 110720713 110721224 -107315934 - L1 LINE L1 -1903 4243 3730 * 4498 180 81 15 chr3 110721221 110722533 -107314625 + L1PB4 LINE L1 4384 5831 -325 509 33 55 22 chr3 110722533 110722624 -107314534 + (TCTA)n Simple_repeat Simple_repeat 1 94 0 4498 180 81 15 chr3 110722624 110722926 -107314232 + L1PB4 LINE L1 5831 6112 -44 255 344 61 0 chr3 110723148 110723279 -107313879 - MIR SINE MIR -37 225 87 335 273 49 60 chr3 110724321 110724504 -107312654 - L1ME LINE L1 -675 5446 5266 1904 207 75 41 chr3 110726893 110727376 -107309782 - MLT1D LTR MaLR 0 505 7 220 327 168 9 chr3 110727389 110727502 -107309656 - MIR SINE MIR -62 146 16 527 284 0 35 chr3 110729279 110729448 -107307710 - MER45A DNA AcHobo -7 171 9 191 349 60 20 chr3 110729485 110729634 -107307524 + L2 LINE L2 3123 3277 -36 2764 289 30 41 chr3 110729881 110731239 -107305919 + L1MA6 LINE L1 466 2470 -5095 2263 116 39 20 chr3 110731239 110731594 -107305564 - THE1B LTR MaLR -2 362 1 2764 289 30 41 chr3 110731594 110731634 -107305524 + L1MA6 LINE L1 2470 2509 -5056 * 12533 189 34 60 chr3 110731624 110731898 -107305260 + L1MA6 LINE L1 3413 3693 -4026 2247 108 0 7 chr3 110731898 110732204 -107304954 + AluY SINE Alu 1 304 -7 12533 189 34 60 chr3 110732204 110732729 -107304429 + L1MA6 LINE L1 3693 4230 -3489 2299 113 0 0 chr3 110732729 110733038 -107304120 + AluSc SINE Alu 1 309 0 12533 189 34 60 chr3 110733038 110736540 -107300618 + L1MA6 LINE L1 4230 7588 -131 1189 238 20 7 chr3 110736540 110736838 -107300320 + AluSx SINE Alu 1 302 0 12533 189 34 60 chr3 110736838 110736945 -107300213 + L1MA6 LINE L1 7588 7696 -23 22 35 0 0 chr3 110736987 110737016 -107300142 + AT_rich Low_complexity Low_complexity 1 29 0 1442 232 74 80 chr3 110737238 110737751 -107299407 - MLT2B1 LTR ERVL -6 514 5 6594 206 60 4 chr3 110737754 110739133 -107298025 - ERVL-B1 LTR ERVL -6 5758 4303 1162 245 4 4 chr3 110739139 110739400 -107297758 + MLT1A2-int LTR MaLR 1475 1735 0 795 210 28 6 chr3 110739400 110739576 -107297582 + MLT1A2 LTR MaLR 1 180 -194 417 119 155 0 chr3 110739626 110739710 -107297448 + MLT1A2 LTR MaLR 294 390 0 700 190 0 0 chr3 110740384 110740505 -107296653 + MER7A DNA MER2_type 11 129 -217 347 304 0 0 chr3 110740500 110740579 -107296579 + MER7A DNA MER2_type 251 329 -7 * 1072 212 101 26 chr3 110741134 110741501 -107295657 + MSTC LTR MaLR 1 428 0 29 28 0 0 chr3 110741740 110741776 -107295382 + AT_rich Low_complexity Low_complexity 1 36 0 2561 55 0 0 chr3 110742055 110742366 -107294792 - AluY SINE Alu 0 311 1 243 186 326 0 chr3 110742626 110742712 -107294446 - MLT1A1 LTR MaLR -17 379 266 498 240 26 71 chr3 110742784 110742971 -107294187 - MLT1A1 LTR MaLR -172 193 5 37 39 0 0 chr3 110743007 110743058 -107294100 + AT_rich Low_complexity Low_complexity 1 51 0 236 357 31 0 chr3 110743222 110743320 -107293838 + L3 LINE CR1 1367 1467 -110 316 0 45 0 chr3 110743586 110743630 -107293528 + (GA)n Simple_repeat Simple_repeat 1 46 0 226 233 0 0 chr3 110744346 110744389 -107292769 + MIR SINE MIR 72 114 -148 2256 110 0 0 chr3 110744697 110744996 -107292162 - AluSq SINE Alu -14 299 1 193 325 50 12 chr3 110745171 110745251 -107291907 - MIR3 SINE MIR -114 94 12 437 335 104 13 chr3 110745523 110745753 -107291405 + MIR SINE MIR 2 252 -10 23 33 0 0 chr3 110746286 110746316 -107290842 + AT_rich Low_complexity Low_complexity 1 30 0 2239 70 0 7 chr3 110746318 110746633 -107290525 + AluY SINE Alu 1 313 0 780 251 32 79 chr3 110747660 110748210 -107288948 + L1M4 LINE L1 662 1178 -5368 5497 179 67 18 chr3 110748228 110749396 -107287762 - Tigger3b DNA MER2_type -1 1230 6 637 215 0 77 chr3 110749401 110749675 -107287483 + L1M4 LINE L1 1195 1495 -5330 10033 97 9 13 chr3 110749675 110750811 -107286347 + L1PA7 LINE L1 3891 5030 -1124 1803 179 0 3 chr3 110750811 110751113 -107286045 + AluSx SINE Alu 1 301 -11 10033 97 9 13 chr3 110751113 110751562 -107285596 + L1PA7 LINE L1 5030 5479 -675 1902 144 18 0 chr3 110751562 110751847 -107285311 + AluSg SINE Alu 1 290 -20 10033 97 9 13 chr3 110751847 110752515 -107284643 + L1PA7 LINE L1 5479 6151 -3 637 215 0 77 chr3 110752515 110752948 -107284210 + L1M4 LINE L1 1495 2135 -4690 2001 60 11 11 chr3 110753323 110753589 -107283569 + L1PA8 LINE L1 5905 6170 -2 22 0 0 0 chr3 110753602 110753624 -107283534 + AT_rich Low_complexity Low_complexity 1 22 0 1625 101 0 9 chr3 110753803 110754030 -107283128 - AluY SINE Alu -3 308 84 24 0 0 0 chr3 110755213 110755237 -107281921 + AT_rich Low_complexity Low_complexity 1 24 0 299 277 28 21 chr3 110757367 110757558 -107279600 - LTR50 LTR ERVL 0 795 587 502 235 71 77 chr3 110757867 110758037 -107279121 - LTR41 LTR ERVL -604 169 1 578 325 57 41 chr3 110758349 110758512 -107278646 - ERVL LTR ERVL -315 5449 5290 1624 70 5 0 chr3 110758512 110758727 -107278431 - L1PA3 LINE L1 -3 6152 5937 578 325 57 41 chr3 110758727 110759052 -107278106 - ERVL LTR ERVL -474 5290 4953 479 371 42 14 chr3 110759122 110759410 -107277748 - ERVL LTR ERVL -901 4863 4568 1463 182 35 0 chr3 110759412 110759698 -107277460 + L1PA16 LINE L1 5865 6160 -6 426 331 129 29 chr3 110760404 110760676 -107276482 - ERVL LTR ERVL -1364 4290 3992 228 265 15 0 chr3 110760680 110760748 -107276410 - L1MC4 LINE L1 -1357 6685 6617 778 317 52 17 chr3 110760916 110761203 -107275955 - ERVL LTR ERVL -2355 3299 3003 263 231 75 56 chr3 110761278 110761438 -107275720 - L1MEc LINE L1 -6153 243 81 24 32 0 0 chr3 110761601 110761632 -107275526 + AT_rich Low_complexity Low_complexity 1 31 0 23 54 0 0 chr3 110761909 110761946 -107275212 + AT_rich Low_complexity Low_complexity 1 37 0 2086 130 0 0 chr3 110762113 110762443 -107274715 + AluSc SINE Alu 1 309 0 462 79 0 0 chr3 110762811 110762874 -107274284 + (TA)n Simple_repeat Simple_repeat 1 63 0 1604 163 63 30 chr3 110764214 110764576 -107272582 - THE1C LTR MaLR -1 374 1 281 322 70 70 chr3 110764648 110765018 -107272140 - MLT1H LTR MaLR -84 465 96 3110 155 8 2 chr3 110765137 110765633 -107271525 - MER1A DNA MER1_type 0 529 31 806 155 16 0 chr3 110765648 110765777 -107271381 - Charlie3 DNA MER1_type -4 2706 2576 510 233 108 0 chr3 110766419 110766539 -107270619 + FLAM_C SINE Alu 1 133 0 29 60 0 0 chr3 110766903 110766953 -107270205 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr3 110767085 110767106 -107270052 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 110768253 110768275 -107268883 + AT_rich Low_complexity Low_complexity 1 22 0 312 27 0 0 chr3 110770367 110770404 -107266754 + (TA)n Simple_repeat Simple_repeat 1 37 0 1998 111 0 59 chr3 110770404 110770710 -107266448 - AluSx SINE Alu -12 300 13 464 154 13 0 chr3 110771976 110772054 -107265104 - MADE1 DNA Mariner 0 80 2 985 196 5 44 chr3 110772308 110772512 -107264646 - MLT1D LTR MaLR -9 496 301 414 217 22 72 chr3 110772541 110772679 -107264479 - MLT1D LTR MaLR -372 133 3 1654 146 3 11 chr3 110773256 110773543 -107263615 + L1PA16 LINE L1 5873 6157 -9 234 146 0 36 chr3 110773687 110773742 -107263416 + (TA)n Simple_repeat Simple_repeat 1 53 0 21 0 0 0 chr3 110774473 110774494 -107262664 + AT_rich Low_complexity Low_complexity 1 21 0 228 361 56 0 chr3 110774719 110774827 -107262331 + MIR3 SINE MIR 42 155 -53 274 273 68 0 chr3 110774999 110775087 -107262071 - L1MC4 LINE L1 -31 8011 7918 216 0 0 0 chr3 110775099 110775123 -107262035 + (TG)n Simple_repeat Simple_repeat 1 24 0 1080 250 116 56 chr3 110775167 110775771 -107261387 - L1MC4 LINE L1 -122 7920 7281 888 291 81 21 chr3 110775824 110776212 -107260946 - L1MC4 LINE L1 -787 7104 6573 2284 113 24 51 chr3 110776212 110776627 -107260531 - L1PA11 LINE L1 -1 6173 5770 888 291 81 21 chr3 110776627 110776764 -107260394 - L1MC4 LINE L1 -1318 6573 6446 251 28 0 0 chr3 110776845 110776905 -107260253 - AluY SINE Alu 0 322 263 498 250 40 20 chr3 110776905 110777057 -107260101 - L1ME LINE L1 -858 5786 5632 275 200 54 0 chr3 110777118 110777248 -107259910 + (TA)n Simple_repeat Simple_repeat 2 138 0 371 280 42 6 chr3 110777325 110777493 -107259665 - L1ME LINE L1 -1045 5599 5426 1634 285 79 29 chr3 110777514 110778382 -107258776 - MER21B LTR ERV1 -55 808 102 3748 117 48 99 chr3 110778461 110779288 -107257870 + LTR1 LTR ERV1 1 785 0 315 284 0 63 chr3 110779315 110779410 -107257748 - MER21B LTR ERV1 -774 89 1 909 257 59 32 chr3 110779482 110780083 -107257075 - L1ME LINE L1 -1230 5414 1079 409 358 65 34 chr3 110780348 110780669 -107256489 - L1ME LINE L1 -5960 865 535 1264 143 65 12 chr3 110781729 110781974 -107255184 - MSTA LTR MaLR -170 258 1 21 89 0 0 chr3 110782056 110782112 -107255046 + AT_rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chr3 110783291 110783313 -107253845 + AT_rich Low_complexity Low_complexity 1 22 0 359 362 98 22 chr3 110783618 110783894 -107253264 - L2 LINE L2 -1657 1657 1361 340 273 87 43 chr3 110784134 110784295 -107252863 + L1MC/D LINE L1 2761 2928 -3218 337 310 61 24 chr3 110784371 110784584 -107252574 + L1MC/D LINE L1 2955 3175 -2971 230 350 102 3 chr3 110784850 110785164 -107251994 + L1MC/D LINE L1 3478 3822 -2324 454 341 88 12 chr3 110785268 110785599 -107251559 + L1MC/D LINE L1 5009 5364 -782 250 258 65 0 chr3 110785621 110785714 -107251444 + L1MC/D LINE L1 5404 5502 -740 2429 174 38 21 chr3 110786002 110786480 -107250678 - MER66B LTR ERV1 0 486 1 397 262 148 0 chr3 110786618 110786740 -107250418 + MER5A DNA MER1_type 7 146 -43 596 243 14 7 chr3 110786740 110786884 -107250274 + MLT2F LTR ERVL 1 145 -518 941 214 122 38 chr3 110786930 110787168 -107249990 + MLT2F LTR ERVL 406 663 0 306 167 0 0 chr3 110787168 110787216 -107249942 + MER5A DNA MER1_type 142 189 0 321 346 74 49 chr3 110787254 110787455 -107249703 + L1M4 LINE L1 4903 5098 -1048 2209 115 3 3 chr3 110787455 110787768 -107249390 + AluSq SINE Alu 1 313 0 321 346 74 49 chr3 110787768 110788055 -107249103 + L1M4 LINE L1 5098 5403 -743 1654 251 37 51 chr3 110788097 110788611 -107248547 - MLT1E2 LTR MaLR -7 619 113 36 23 0 0 chr3 110788616 110788659 -107248499 + AT_rich Low_complexity Low_complexity 1 43 0 1114 204 6 123 chr3 110788666 110788990 -107248168 - AluJb SINE Alu -16 286 1 368 210 12 12 chr3 110788990 110789071 -107248087 - MLT1E2 LTR MaLR -475 149 69 239 146 0 42 chr3 110789033 110789081 -107248077 - MLT2C1 LTR ERVL -312 85 40 * 205 277 64 0 chr3 110790402 110790449 -107246709 - L2 LINE L2 -1384 1930 1881 181 281 34 45 chr3 110790640 110790729 -107246429 + L2 LINE L2 2551 2638 -676 308 299 28 28 chr3 110791743 110791887 -107245271 - L1M4 LINE L1 -3688 2458 2315 2037 192 21 62 chr3 110792506 110793038 -107244120 + LTR54 LTR ERV1 1 510 0 25 75 0 0 chr3 110794284 110794337 -107242821 + AT_rich Low_complexity Low_complexity 1 53 0 1556 208 73 86 chr3 110794368 110794988 -107242170 - LTR9 LTR ERV1 0 612 1 246 183 0 56 chr3 110795143 110795214 -107241944 + (TA)n Simple_repeat Simple_repeat 1 67 0 48 32 0 0 chr3 110796156 110796218 -107240940 + AT_rich Low_complexity Low_complexity 1 62 0 702 207 0 0 chr3 110796218 110796339 -107240819 - FLAM_A SINE Alu -8 125 5 1828 175 10 0 chr3 110796432 110796741 -107240417 + AluSx SINE Alu 1 312 0 2341 69 0 10 chr3 110796888 110797213 -107239945 - AluY SINE Alu 0 311 1 21 0 0 0 chr3 110797214 110797235 -107239923 + AT_rich Low_complexity Low_complexity 1 21 0 2345 334 151 19 chr3 110797528 110798970 -107238188 + L2 LINE L2 1337 2968 -346 248 121 0 0 chr3 110798996 110799029 -107238129 - Tigger5 DNA MER2_type -24 2299 2267 3376 187 25 52 chr3 110799041 110800046 -107237112 - L1MCa LINE L1 -5290 1136 5 23 33 0 0 chr3 110800148 110800178 -107236980 + AT_rich Low_complexity Low_complexity 1 30 0 2320 217 132 24 chr3 110801100 110801923 -107235235 + LTR28 LTR ERV1 1 953 -67 229 275 0 14 chr3 110801976 110802045 -107235113 + LTR28 LTR ERV1 953 1020 0 1598 225 14 19 chr3 110803763 110804128 -107233030 - MLT1A1 LTR MaLR -2 363 1 226 353 33 39 chr3 110804758 110804911 -107232247 + L2 LINE L2 2633 2784 -530 203 214 45 11 chr3 110805986 110806075 -107231083 + (TTAA)n Simple_repeat Simple_repeat 3 94 0 246 125 0 83 chr3 110806400 110806448 -107230710 + MLT1A1 LTR MaLR 1 44 -330 6269 38 0 0 chr3 110806448 110807207 -107229951 - L1PA5 LINE L1 -1845 4301 3543 8809 35 1 1 chr3 110807213 110809055 -107228103 + L1PA5 LINE L1 4305 6147 -7 21 0 0 0 chr3 110809056 110809077 -107228081 + AT_rich Low_complexity Low_complexity 1 21 0 1230 188 19 121 chr3 110809077 110809450 -107227708 + MLT1A1 LTR MaLR 31 365 0 724 198 28 23 chr3 110809450 110809627 -107227531 + MLT1A1-int LTR MaLR 1 178 -1557 319 217 0 0 chr3 110809776 110809836 -107227322 - MER21B-int LTR ERV1 -93 4098 4039 13382 161 33 9 chr3 110809845 110810696 -107226462 - L1PA11 LINE L1 -2 7610 6781 1896 127 55 50 chr3 110810696 110811058 -107226100 - THE1B LTR MaLR 0 364 1 13382 161 33 9 chr3 110811058 110813534 -107223624 - L1PA11 LINE L1 -831 6781 4208 7206 240 22 17 chr3 110813549 110813817 -107223341 - L1PA11 LINE L1 -4941 2643 2378 2152 127 7 3 chr3 110813817 110814124 -107223034 - AluSc SINE Alu -1 308 1 7206 240 22 17 chr3 110814124 110815709 -107221449 - L1PA11 LINE L1 -5206 2378 2 2002 248 58 67 chr3 110815801 110815857 -107221301 - MER21B-int LTR ERV1 -3526 665 610 1946 193 19 35 chr3 110815857 110816288 -107220870 + MSTC LTR MaLR 5 428 0 2002 248 58 67 chr3 110816288 110816889 -107220269 - MER21B-int LTR ERV1 -3581 610 14 2105 274 40 62 chr3 110816920 110817742 -107219416 - MER21B LTR ERV1 -48 815 12 22 0 0 0 chr3 110818274 110818296 -107218862 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 110818552 110818574 -107218584 + AT_rich Low_complexity Low_complexity 1 22 0 25 75 0 0 chr3 110819053 110819106 -107218052 + AT_rich Low_complexity Low_complexity 1 53 0 29 70 0 0 chr3 110819574 110819631 -107217527 + AT_rich Low_complexity Low_complexity 1 57 0 29 47 0 0 chr3 110819652 110819695 -107217463 + AT_rich Low_complexity Low_complexity 1 43 0 520 381 26 23 chr3 110819860 110820248 -107216910 + LTR16C LTR ERVL 82 470 -21 186 43 0 0 chr3 110820306 110820329 -107216829 + (CA)n Simple_repeat Simple_repeat 2 24 0 44 0 0 0 chr3 110821506 110821550 -107215608 + AT_rich Low_complexity Low_complexity 1 44 0 3098 181 17 2 chr3 110821734 110822557 -107214601 - L1P5 LINE L1 -351 5805 4973 2367 117 92 37 chr3 110822561 110823013 -107214145 + MLT2A1 LTR ERVL 1 515 0 2616 222 27 2 chr3 110823013 110823648 -107213510 - L1 LINE L1 -1174 4972 4322 * 7119 254 104 34 chr3 110823646 110824065 -107213093 + L1PA12 LINE L1 6 394 -7190 2307 59 0 7 chr3 110824065 110824396 -107212762 + AluY SINE Alu 1 329 0 7119 254 104 34 chr3 110824396 110827820 -107209338 + L1PA12 LINE L1 394 4132 -3452 2223 146 33 33 chr3 110827823 110828245 -107208913 + L1P4 LINE L1 4900 5328 -837 2188 122 0 0 chr3 110828245 110828548 -107208610 + AluSg SINE Alu 1 303 -7 2223 146 33 33 chr3 110828548 110828753 -107208405 + L1P4 LINE L1 5328 5531 -634 1069 249 31 151 chr3 110828754 110829865 -107207293 - L1PBb LINE L1 -4764 2084 1016 539 352 25 22 chr3 110829985 110830309 -107206849 - L1PBb LINE L1 -5827 1022 698 249 347 64 62 chr3 110830530 110831032 -107206126 - L1PBb LINE L1 -6333 516 14 24 0 0 0 chr3 110831170 110831194 -107205964 + AT_rich Low_complexity Low_complexity 1 24 0 337 304 10 10 chr3 110831681 110831783 -107205375 - MIR SINE MIR -132 130 29 26 30 0 0 chr3 110831786 110831819 -107205339 + AT_rich Low_complexity Low_complexity 1 33 0 402 263 30 112 chr3 110832181 110832373 -107204785 - MIR SINE MIR -10 252 81 2118 119 0 7 chr3 110832373 110832666 -107204492 + AluSc SINE Alu 1 291 -18 402 263 30 112 chr3 110832666 110832705 -107204453 - MIR SINE MIR -181 81 40 26 30 0 0 chr3 110832887 110832920 -107204238 + AT_rich Low_complexity Low_complexity 1 33 0 2213 80 0 23 chr3 110833000 110833301 -107203857 - AluSg SINE Alu -16 294 1 27 49 0 0 chr3 110833840 110833881 -107203277 + AT_rich Low_complexity Low_complexity 1 41 0 211 274 0 0 chr3 110834557 110834608 -107202550 + MIR SINE MIR 101 151 -111 21 0 0 0 chr3 110836577 110836598 -107200560 + AT_rich Low_complexity Low_complexity 1 21 0 696 6 112 0 chr3 110836998 110837159 -107199999 + (TA)n Simple_repeat Simple_repeat 2 180 0 24 0 0 0 chr3 110837166 110837190 -107199968 + AT_rich Low_complexity Low_complexity 1 24 0 2483 56 0 0 chr3 110837452 110837754 -107199404 - MER11D LTR ERVK 0 897 596 423 0 0 20 chr3 110837753 110837804 -107199354 - MER11D LTR ERVK -847 50 1 * 2796 142 158 42 chr3 110837898 110838609 -107198549 - MER11A LTR ERVK 0 1266 474 250 283 0 94 chr3 110839759 110839865 -107197293 - Tigger8 DNA MER2_type -214 452 357 2263 109 0 0 chr3 110839877 110840171 -107196987 - AluSx SINE Alu -18 294 1 450 360 15 25 chr3 110840746 110840946 -107196212 + MIR SINE MIR 3 200 -62 357 214 0 0 chr3 110841123 110841207 -107195951 + L1MA9 LINE L1 6192 6275 -37 296 107 68 0 chr3 110841712 110841815 -107195343 + (TA)n Simple_repeat Simple_repeat 1 110 0 7322 42 15 0 chr3 110843406 110844484 -107192674 - L1PA5 LINE L1 -1 6153 5071 188 212 129 47 chr3 110844505 110844590 -107192568 + MIR SINE MIR 74 144 -64 2055 158 3 0 chr3 110844989 110845300 -107191858 - AluSx SINE Alu 0 312 1 190 400 0 0 chr3 110845419 110845494 -107191664 - L3 LINE CR1 -112 1465 1391 207 434 23 0 chr3 110845544 110845673 -107191485 - L2 LINE L2 -5 3267 3136 23 0 0 0 chr3 110846620 110846643 -107190515 + AT_rich Low_complexity Low_complexity 1 23 0 462 36 0 0 chr3 110846662 110846718 -107190440 + (TTA)n Simple_repeat Simple_repeat 2 57 0 1264 13 40 0 chr3 110846720 110846872 -107190286 - L1PA2 LINE L1 -13 6142 5985 1109 16 0 0 chr3 110846872 110847001 -107190157 + L1HS LINE L1 5844 5972 -183 1815 271 155 26 chr3 110848906 110849959 -107187199 - L1MC4 LINE L1 -155 7887 6699 243 191 0 48 chr3 110850000 110850063 -107187095 + CT-rich Low_complexity Low_complexity 1 60 0 325 298 71 12 chr3 110850070 110850238 -107186920 - L1MC4a LINE L1 -1249 6559 6382 3525 166 34 72 chr3 110850238 110850979 -107186179 + Ricksha_b DNA DNA 7 719 -535 3910 169 24 21 chr3 110850980 110851022 -107186136 - MER50 LTR ERV1 -23 711 671 2019 117 0 46 chr3 110851022 110851329 -107185829 - AluSg SINE Alu -17 293 1 3910 169 24 21 chr3 110851329 110851995 -107185163 - MER50 LTR ERV1 -63 671 1 1375 103 5 0 chr3 110851996 110852181 -107184977 - MER50-int LTR ERV1 -9 7196 7011 2366 176 47 10 chr3 110852189 110852701 -107184457 + Ricksha_b DNA DNA 716 1246 -8 251 245 91 35 chr3 110852756 110852899 -107184259 - L1ME3 LINE L1 -1 6161 6011 239 325 119 12 chr3 110853154 110853314 -107183844 - L1ME3A LINE L1 -39 6131 5955 679 282 63 19 chr3 110853337 110853653 -107183505 - L1ME3A LINE L1 -254 5916 5587 2084 155 7 0 chr3 110853663 110853973 -107183185 + MER1B DNA MER1_type 28 339 0 1251 214 88 9 chr3 110854096 110854414 -107182744 + MER2 DNA MER2_type 2 344 0 416 182 23 0 chr3 110854432 110854520 -107182638 - MLT1E3 LTR MaLR -2 622 533 1610 201 0 76 chr3 110854777 110855146 -107182012 - MLT2C2 LTR ERVL 0 464 124 323 247 12 0 chr3 110855136 110855217 -107181941 + MLT1E3 LTR MaLR 122 203 -421 * 408 40 0 0 chr3 110855300 110855350 -107181808 + (CA)n Simple_repeat Simple_repeat 2 51 0 1120 199 64 84 chr3 110855354 110855651 -107181507 - AluJo SINE Alu -10 292 2 22 56 0 0 chr3 110855651 110855687 -107181471 + AT_rich Low_complexity Low_complexity 1 36 0 367 165 37 165 chr3 110856019 110856075 -107181083 + L1MC1 LINE L1 6212 6249 -84 3972 98 24 3 chr3 110856075 110856649 -107180509 - L1PA11 LINE L1 -3 6171 5586 367 165 37 165 chr3 110856649 110856701 -107180457 + L1MC1 LINE L1 6249 6306 -27 27 73 0 0 chr3 110857921 110857976 -107179182 + AT_rich Low_complexity Low_complexity 1 55 0 21 57 0 0 chr3 110858014 110858049 -107179109 + AT_rich Low_complexity Low_complexity 1 35 0 198 71 0 0 chr3 110860418 110860446 -107176712 + (TA)n Simple_repeat Simple_repeat 2 29 0 210 298 0 0 chr3 110860497 110860554 -107176604 + (CA)n Simple_repeat Simple_repeat 2 58 0 514 341 254 21 chr3 110860916 110861494 -107175664 + L2 LINE L2 49 761 -2553 811 269 91 59 chr3 110861510 110861916 -107175242 + L2 LINE L2 2863 3281 -32 648 189 43 27 chr3 110862719 110862904 -107174254 + MER53 DNA DNA 1 188 -1 1232 159 70 0 chr3 110863767 110863871 -107173287 + MER30 DNA MER1_type 2 97 -133 186 71 0 0 chr3 110863871 110863899 -107173259 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1232 159 70 0 chr3 110863899 110864008 -107173150 + MER30 DNA MER1_type 97 230 0 23 33 0 0 chr3 110864397 110864427 -107172731 + AT_rich Low_complexity Low_complexity 1 30 0 184 313 25 25 chr3 110866958 110867038 -107170120 - L2 LINE L2 -13 3300 3221 207 403 0 0 chr3 110867231 110867308 -107169850 - L2 LINE L2 -336 2936 2860 1786 274 33 23 chr3 110867444 110867958 -107169200 - LTR40a LTR ERVL 0 519 1 209 345 148 61 chr3 110867960 110868549 -107168609 - L2 LINE L2 -593 2721 2082 451 211 0 0 chr3 110869117 110869212 -107167946 + L1MD3 LINE L1 7818 7912 -83 21 36 0 0 chr3 110870338 110870366 -107166792 + AT_rich Low_complexity Low_complexity 1 28 0 380 311 61 29 chr3 110870368 110870746 -107166412 + L1ME LINE L1 5296 5682 -439 12388 224 35 58 chr3 110871299 110873743 -107163415 - L1MA3 LINE L1 -71 6549 4051 482 114 13 0 chr3 110873743 110873822 -107163336 + MADE1 DNA Mariner 1 80 0 12388 224 35 58 chr3 110873822 110875558 -107161600 - L1MA3 LINE L1 -2569 4051 2277 607 216 119 46 chr3 110875558 110875752 -107161406 - LTR55 LTR ERV -340 208 1 12388 224 35 58 chr3 110875752 110875809 -107161349 - L1MA3 LINE L1 -4343 2277 2220 12116 131 14 6 chr3 110875809 110878586 -107158572 - L1PA8 LINE L1 0 6172 3384 12388 224 35 58 chr3 110878586 110880657 -107156501 - L1MA3 LINE L1 -4400 2220 2 21 57 0 0 chr3 110881238 110881273 -107155885 + AT_rich Low_complexity Low_complexity 1 35 0 206 148 12 62 chr3 110881890 110881971 -107155187 + (TA)n Simple_repeat Simple_repeat 2 78 0 293 250 0 22 chr3 110881971 110882063 -107155095 - L1MC4 LINE L1 -1339 6703 6614 * 298 253 0 0 chr3 110881987 110882066 -107155092 + L1MC4 LINE L1 6614 6692 -1350 2198 149 25 0 chr3 110885539 110885894 -107151264 + THE1B LTR MaLR 1 364 0 4354 26 25 0 chr3 110886322 110886853 -107150305 - L1PA4 LINE L1 -1 6154 5611 405 0 0 0 chr3 110887056 110887101 -107150057 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 194 290 129 16 chr3 110887773 110887897 -107149261 - L2 LINE L2 -168 3145 3008 342 316 100 74 chr3 110887997 110888228 -107148930 - MIR SINE MIR -1 261 25 11345 242 42 34 chr3 110888982 110889962 -107147196 - L1PA16 LINE L1 -6 6811 5841 8022 52 10 0 chr3 110889962 110891750 -107145408 + L1PA5 LINE L1 4350 6153 -1 11345 242 42 34 chr3 110891750 110891767 -107145391 - L1PA16 LINE L1 -976 5841 5826 2210 69 0 75 chr3 110891767 110892100 -107145058 + AluY SINE Alu 1 308 -3 11345 242 42 34 chr3 110892100 110896490 -107140668 - L1PA16 LINE L1 -991 5826 1396 887 363 24 49 chr3 110897345 110897973 -107139185 - L1PA16 LINE L1 -6175 612 1 27 0 0 0 chr3 110898032 110898059 -107139099 + AT_rich Low_complexity Low_complexity 1 27 0 728 261 30 0 chr3 110898511 110898714 -107138444 - MER74A LTR ERVL 0 558 350 4317 244 54 13 chr3 110898719 110899145 -107138013 + L1MC3 LINE L1 4554 4961 -1185 1990 143 0 0 chr3 110899145 110899445 -107137713 + AluY SINE Alu 1 300 -11 4317 244 54 13 chr3 110899445 110900834 -107136324 + L1MC3 LINE L1 4961 5401 -745 276 215 31 0 chr3 110900836 110900901 -107136257 + Tigger2 DNA MER2_type 3 69 -2649 * 437 149 85 11 chr3 110900899 110900993 -107136165 + Tigger2 DNA MER2_type 2280 2380 -338 * 1068 180 51 14 chr3 110900974 110901191 -107135967 + Tigger2 DNA MER2_type 2484 2708 -10 4749 204 66 12 chr3 110901192 110901917 -107135241 + L1MC3 LINE L1 6581 7388 -397 414 57 0 0 chr3 110901917 110901970 -107135188 + (TA)n Simple_repeat Simple_repeat 2 54 0 4749 204 66 12 chr3 110901970 110902357 -107134801 + L1MC3 LINE L1 7388 7753 -32 29 70 0 0 chr3 110902404 110902461 -107134697 + AT_rich Low_complexity Low_complexity 1 57 0 302 157 0 29 chr3 110902666 110902736 -107134422 + CT-rich Low_complexity Low_complexity 1 68 0 2136 86 0 0 chr3 110902758 110903036 -107134122 - AluY SINE Alu -33 278 1 729 169 8 0 chr3 110903712 110903842 -107133316 - L1PB3 LINE L1 -2 6152 6022 21480 182 22 19 chr3 110903859 110909429 -107127729 - L1PA11 LINE L1 -3 7609 1215 22 35 0 0 chr3 110909563 110909592 -107127566 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr3 110910385 110910409 -107126749 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr3 110911481 110911512 -107125646 + AT_rich Low_complexity Low_complexity 1 31 0 268 240 0 45 chr3 110911512 110911613 -107125545 - L1MEc LINE L1 -4978 1649 1362 26 30 0 0 chr3 110912394 110912427 -107124731 + AT_rich Low_complexity Low_complexity 1 33 0 203 216 0 20 chr3 110912753 110912804 -107124354 + (TA)n Simple_repeat Simple_repeat 2 51 0 9203 214 41 16 chr3 110913139 110914113 -107123045 - L1PA16 LINE L1 -3 6163 5215 320 77 19 0 chr3 110914113 110914165 -107122993 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 9203 214 41 16 chr3 110914165 110916444 -107120714 - L1PA16 LINE L1 -951 5215 2817 2111 138 0 0 chr3 110916444 110916741 -107120417 - AluSc SINE Alu -12 297 1 9203 214 41 16 chr3 110916741 110916942 -107120216 - L1PA16 LINE L1 -3349 2817 2623 1036 289 168 30 chr3 110916994 110917180 -107119978 + L1ME3A LINE L1 2110 2269 -3877 1534 246 17 8 chr3 110917180 110917542 -107119616 + MLT1A1 LTR MaLR 1 365 0 1036 289 168 30 chr3 110917542 110919311 -107117847 + L1ME3A LINE L1 2269 4460 -1686 348 64 0 0 chr3 110919311 110919358 -107117800 + (CA)n Simple_repeat Simple_repeat 2 48 0 1036 289 168 30 chr3 110919358 110919796 -107117362 + L1ME3A LINE L1 4460 4836 -1310 786 299 102 10 chr3 110919924 110920315 -107116843 + L1ME3A LINE L1 5709 6135 -35 322 295 130 30 chr3 110920624 110920822 -107116336 + MIR SINE MIR 28 247 -15 2333 71 0 13 chr3 110920977 110921285 -107115873 + AluY SINE Alu 1 304 -7 21 82 0 0 chr3 110921298 110921347 -107115811 + AT_rich Low_complexity Low_complexity 1 49 0 288 70 0 0 chr3 110922040 110922083 -107115075 + (CA)n Simple_repeat Simple_repeat 2 44 0 202 321 62 12 chr3 110922170 110922251 -107114907 + L2 LINE L2 3008 3092 -221 40 49 0 0 chr3 110922280 110922341 -107114817 + AT_rich Low_complexity Low_complexity 1 61 0 23 0 0 0 chr3 110922815 110922838 -107114320 + AT_rich Low_complexity Low_complexity 1 23 0 1083 277 147 9 chr3 110924185 110924614 -107112544 + L1MD2 LINE L1 5855 6342 -17 199 209 23 0 chr3 110925025 110925068 -107112090 + L2 LINE L2 3267 3310 -3 22 0 0 0 chr3 110925636 110925658 -107111500 + AT_rich Low_complexity Low_complexity 1 22 0 1183 254 83 24 chr3 110925768 110925932 -107111226 + L1ME1 LINE L1 5616 5769 -397 1552 221 32 58 chr3 110925932 110926430 -107110728 + MER31A LTR ERV1 1 485 0 1183 254 83 24 chr3 110926430 110926709 -107110449 + L1ME1 LINE L1 5769 6013 -153 22 35 0 0 chr3 110929052 110929081 -107108077 + AT_rich Low_complexity Low_complexity 1 29 0 2107 109 10 13 chr3 110929690 110929994 -107107164 - AluSx SINE Alu -9 303 1 21 0 0 0 chr3 110930004 110930025 -107107133 + AT_rich Low_complexity Low_complexity 1 21 0 2568 171 55 14 chr3 110930073 110930587 -107106571 - L1MA6 LINE L1 -22 6278 5744 219 200 22 0 chr3 110930690 110930735 -107106423 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 1899 134 0 4 chr3 110930897 110931165 -107105993 - AluSq SINE Alu -23 290 24 319 345 117 31 chr3 110931541 110931831 -107105327 + L1M4 LINE L1 535 849 -5976 4380 170 25 12 chr3 110931912 110932728 -107104430 + LTR1B LTR ERV1 1 826 0 16868 171 32 23 chr3 110932752 110935790 -107101368 + HUERS-P2 LTR ERV1 25 3088 0 2965 149 86 4 chr3 110935790 110936315 -107100843 + LTR1B LTR ERV1 1 568 -258 352 284 42 21 chr3 110936327 110936517 -107100641 + L1M4 LINE L1 1468 1661 -4881 833 257 26 59 chr3 110936598 110936987 -107100171 + L1ME2 LINE L1 5785 6326 -8 1187 275 155 26 chr3 110937093 110938444 -107098714 + L1M4 LINE L1 4454 5982 -700 796 235 97 0 chr3 110939426 110939622 -107097536 + MER58A DNA MER1_type 7 221 -3 30 0 0 0 chr3 110940769 110940799 -107096359 + AT_rich Low_complexity Low_complexity 1 30 0 449 340 66 56 chr3 110940800 110941448 -107095710 - L1MCa LINE L1 -2377 4049 3395 21 0 0 0 chr3 110941453 110941474 -107095684 + AT_rich Low_complexity Low_complexity 1 21 0 246 225 42 0 chr3 110941508 110941579 -107095579 - L1MCa LINE L1 -3108 3318 3245 204 67 0 0 chr3 110941640 110941670 -107095488 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 243 238 122 79 chr3 110941671 110941860 -107095298 - L2 LINE L2 -5 3308 3112 241 283 217 9 chr3 110942031 110942137 -107095021 - L2 LINE L2 -350 2963 2836 185 108 27 0 chr3 110942791 110942828 -107094330 + (TAGA)n Simple_repeat Simple_repeat 3 40 0 21 71 0 0 chr3 110943098 110943140 -107094018 + AT_rich Low_complexity Low_complexity 1 42 0 2388 45 0 7 chr3 110943643 110943933 -107093225 - AluY SINE Alu -9 302 15 243 299 156 12 chr3 110945268 110945435 -107091723 - L1MCa LINE L1 -4309 2298 2108 939 278 62 61 chr3 110945516 110946457 -107090701 - L1MCa LINE L1 -4600 2007 864 188 271 17 17 chr3 111046708 111046767 -106990391 - L2 LINE L2 -1392 1922 1864 659 203 123 0 chr3 111046833 111046971 -106990187 - MIR SINE MIR -101 161 7 2005 142 7 3 chr3 111047163 111047472 -106989686 + AluSg SINE Alu 1 310 0 4810 107 14 0 chr3 111047924 111048588 -106988570 + THE1B-int LTR MaLR 908 1580 0 2226 132 19 46 chr3 111048588 111048958 -106988200 + THE1B LTR MaLR 1 360 -4 609 302 79 40 chr3 111048962 111049486 -106987672 + THE1B-int LTR MaLR 1 606 -765 372 273 65 32 chr3 111049771 111049925 -106987233 + MLT1-int LTR MaLR 699 857 -514 611 221 22 7 chr3 111050294 111050430 -106986728 + Tigger7 DNA MER2_type 1 138 -595 7586 82 37 0 chr3 111050573 111051663 -106985495 + L1P LINE L1 3536 4665 -1481 10691 134 28 16 chr3 111051774 111053622 -106983536 + L1P3 LINE L1 16 1881 -4580 1040 181 11 6 chr3 111054056 111054238 -106982920 - AluJb SINE Alu -10 302 120 1556 152 134 4 chr3 111054244 111054520 -106982638 - AluSx SINE Alu 0 312 1 2147 122 3 0 chr3 111055301 111055597 -106981561 + AluSx SINE Alu 7 303 -9 6541 116 40 44 chr3 111056068 111057204 -106979954 - Tigger1 DNA MER2_type -54 2364 1234 443 200 25 0 chr3 111058394 111058474 -106978684 - AluJb SINE Alu -23 289 208 3446 178 31 52 chr3 111058577 111058626 -106978532 - L1M2 LINE L1 -5033 1816 1767 2194 113 3 0 chr3 111058626 111058917 -106978241 + AluSx SINE Alu 1 292 -20 3446 178 31 52 chr3 111058917 111059630 -106977528 - L1M2 LINE L1 -5082 1767 1070 1045 134 111 0 chr3 111060210 111060381 -106976777 - THE1B LTR MaLR 0 364 175 180 0 0 0 chr3 111060381 111060401 -106976757 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 7094 72 14 35 chr3 111060406 111061459 -106975699 - L1PA8 LINE L1 -3 6169 5121 2103 134 45 3 chr3 111061560 111061895 -106975263 - L1M3 LINE L1 -565 5769 5421 363 306 68 9 chr3 111061958 111062180 -106974978 - L1M4 LINE L1 -1166 4980 4746 340 204 197 20 chr3 111062183 111062335 -106974823 + MIR SINE MIR 81 259 -3 23 33 0 0 chr3 111062369 111062399 -106974759 + AT_rich Low_complexity Low_complexity 1 30 0 413 194 85 16 chr3 111062551 111062680 -106974478 - MLT1A1 LTR MaLR 0 365 228 631 206 0 15 chr3 111163934 111164065 -106873093 + MLT1C LTR MaLR 334 462 -5 205 240 20 0 chr3 111164415 111164465 -106872693 + MER5A DNA MER1_type 117 167 -22 * 209 272 17 97 chr3 111164446 111164589 -106872569 - MIR3 SINE MIR -40 168 48 495 243 93 7 chr3 111164666 111164806 -106872352 + MIR SINE MIR 97 248 -14 1629 108 29 12 chr3 111164857 111165098 -106872060 + AluSx SINE Alu 5 249 -63 2077 152 103 3 chr3 111165098 111165466 -106871692 - MER50 LTR ERV1 -329 405 1 632 124 26 26 chr3 111165737 111165850 -106871308 + AluJb SINE Alu 194 306 -6 670 184 129 45 chr3 111166174 111166375 -106870783 + Charlie4a DNA MER1_type 7 224 -284 2687 227 12 45 chr3 111166381 111166855 -106870303 + MER82 DNA MER2_type 10 457 -196 2203 107 0 7 chr3 111166855 111167154 -106870004 + AluSq SINE Alu 1 297 -16 2687 227 12 45 chr3 111167154 111167344 -106869814 + MER82 DNA MER2_type 457 652 -1 846 194 18 84 chr3 111167344 111167560 -106869598 + Charlie4a DNA MER1_type 232 426 -1535 1718 189 7 7 chr3 111167560 111167861 -106869297 + AluJo SINE Alu 1 301 -11 846 194 18 84 chr3 111167861 111167928 -106869230 + Charlie4a DNA MER1_type 426 496 -12 2037 106 38 0 chr3 111168060 111168353 -106868805 + AluSg SINE Alu 1 304 -6 305 263 70 9 chr3 111169456 111169570 -106867588 + MIR SINE MIR 87 207 -55 502 221 40 126 chr3 111169589 111169728 -106867430 - MIR SINE MIR -58 204 89 1336 154 88 48 chr3 111169728 111170000 -106867158 + AluJo SINE Alu 2 284 -28 502 221 40 126 chr3 111170000 111170082 -106867076 - MIR SINE MIR -173 89 2 262 118 78 0 chr3 111170383 111170434 -106866724 + MLT1H LTR MaLR 80 134 -415 636 241 43 73 chr3 111170531 111170763 -106866395 - LTR9 LTR ERV1 0 612 388 887 270 61 56 chr3 111171683 111172075 -106865083 + MLT1J LTR MaLR 69 462 -49 740 146 0 16 chr3 111172808 111172931 -106864227 + AluSg/x SINE Alu 189 309 -1 5716 102 14 3 chr3 111172933 111173834 -106863324 + L1MA3 LINE L1 5172 6081 -224 2111 145 3 0 chr3 111173835 111174139 -106863019 + AluSx SINE Alu 1 305 -7 187 133 0 0 chr3 111175415 111175445 -106861713 - L3b LINE CR1 -25 1558 1529 1421 157 14 64 chr3 111175746 111176026 -106861132 - AluJo SINE Alu 0 312 47 217 170 45 0 chr3 111176455 111176567 -106860591 + (TG)n Simple_repeat Simple_repeat 2 118 0 195 233 70 35 chr3 111176722 111176808 -106860350 - MIR3 SINE MIR -11 197 109 238 296 116 45 chr3 111177304 111177571 -106859587 + L2 LINE L2 2890 3175 -97 180 0 0 0 chr3 111178396 111178416 -106858742 + (T)n Simple_repeat Simple_repeat 1 20 0 369 209 0 0 chr3 111179002 111179069 -106858089 + MLT1A2 LTR MaLR 5 71 -303 2567 71 6 0 chr3 111179131 111179442 -106857716 + AluSq SINE Alu 1 313 0 918 117 0 36 chr3 111180189 111180326 -106856832 + FRAM SINE Alu 29 160 -16 1516 103 5 0 chr3 111181133 111181327 -106855831 + AluSc SINE Alu 1 195 -114 631 301 31 10 chr3 111181626 111181819 -106855339 - MER117 DNA MER1_type 0 197 1 216 260 125 39 chr3 111181979 111182083 -106855075 - MIR SINE MIR 0 262 150 269 303 17 25 chr3 111182236 111182355 -106854803 - MIR SINE MIR -111 151 34 2266 105 7 0 chr3 111183015 111183310 -106853848 - AluSx SINE Alu -15 297 1 226 240 104 10 chr3 111183651 111183747 -106853411 + MIR SINE MIR 48 152 -110 691 180 6 18 chr3 111184434 111184601 -106852557 - MER69 DNA AcHobo -47 2479 2315 895 198 5 24 chr3 111184622 111184829 -106852329 + L1MA4 LINE L1 6022 6224 -76 1914 106 13 27 chr3 111185281 111185714 -106851444 + HERV17 LTR ERV1 1247 1720 -5176 * 4374 86 7 2 chr3 111185709 111186288 -106850870 + HERV17 LTR ERV1 7757 8338 -61 388 254 16 0 chr3 111187869 111187995 -106849163 + MER69 DNA AcHobo 2382 2509 -17 210 37 0 0 chr3 111188658 111188685 -106848473 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 1487 246 119 19 chr3 111190230 111191192 -106845966 - L1MB8 LINE L1 -301 5877 4800 21 57 0 0 chr3 111191326 111191361 -106845797 + GC_rich Low_complexity Low_complexity 1 35 0 679 238 78 42 chr3 111191525 111191870 -106845288 - LTR18B LTR ERVL 0 614 1 4971 140 3 4 chr3 111191873 111192608 -106844550 - HERVL18 LTR ERVL -2 6045 5312 249 180 0 0 chr3 111293165 111293215 -106743943 + (TA)n Simple_repeat Simple_repeat 2 51 0 218 369 19 10 chr3 111293238 111293341 -106743817 + L2 LINE L2 3207 3310 -3 657 289 67 81 chr3 111293854 111294286 -106742872 - LTR16A1 LTR ERVL 0 457 32 246 350 93 68 chr3 111294644 111295010 -106742148 + L2 LINE L2 2873 3247 -25 2514 53 3 0 chr3 111295258 111295557 -106741601 + AluY SINE Alu 1 300 -11 665 54 0 0 chr3 111295637 111295729 -106741429 + L1PA4 LINE L1 6064 6155 0 447 259 22 37 chr3 111296034 111296169 -106740989 + MIR3 SINE MIR 8 140 -68 203 351 52 45 chr3 111296807 111296961 -106740197 - L2 LINE L2 -1 3312 3158 1579 135 97 152 chr3 111297421 111297874 -106739284 - MSTA LTR MaLR 0 428 1 4909 168 8 113 chr3 111297874 111299092 -106738066 - MSTA-int LTR MaLR 0 1580 491 1246 174 181 20 chr3 111299115 111299413 -106737745 - MSTA LTR MaLR -82 346 1 557 318 48 24 chr3 111299467 111299719 -106737439 + MIR SINE MIR 1 258 -4 21 0 0 0 chr3 111301646 111301667 -106735491 + AT_rich Low_complexity Low_complexity 1 21 0 4089 214 36 49 chr3 111302023 111302189 -106734969 + L1MA1 LINE L1 16 183 -7382 2268 115 0 10 chr3 111302189 111302502 -106734656 - AluSg SINE Alu 0 310 1 4089 214 36 49 chr3 111302502 111303333 -106733825 + L1MA1 LINE L1 183 1000 -6565 14551 170 23 10 chr3 111303336 111303967 -106733191 + L1MA1 LINE L1 1107 1729 -5992 348 24 0 0 chr3 111303967 111304008 -106733150 + (GA)n Simple_repeat Simple_repeat 2 42 0 14551 170 23 10 chr3 111304008 111308773 -106728385 + L1MA1 LINE L1 1729 6607 -1114 2282 122 0 3 chr3 111308773 111309084 -106728074 + AluSx SINE Alu 1 310 -2 14551 170 23 10 chr3 111309084 111310214 -106726944 + L1MA1 LINE L1 6607 7721 0 253 297 31 57 chr3 111310234 111310463 -106726695 + L1M4 LINE L1 4699 4921 -1225 272 282 0 0 chr3 111310463 111310534 -106726624 - MLT1L LTR MaLR -456 159 89 26 0 0 0 chr3 111310742 111310768 -106726390 + AT_rich Low_complexity Low_complexity 1 26 0 29 28 0 0 chr3 111310974 111311010 -106726148 + AT_rich Low_complexity Low_complexity 1 36 0 240 189 38 19 chr3 111311190 111311296 -106725862 + (TA)n Simple_repeat Simple_repeat 2 109 0 767 216 114 0 chr3 111311906 111312073 -106725085 - MER5A DNA MER1_type -1 188 3 250 266 13 0 chr3 111316787 111316866 -106720292 + (TTTA)n Simple_repeat Simple_repeat 2 81 0 315 337 41 47 chr3 111318493 111318665 -106718493 - MIR3 SINE MIR -34 174 4 1795 139 29 0 chr3 111319563 111319836 -106717322 - AluSx SINE Alu -25 287 7 216 322 0 0 chr3 111319976 111320035 -106717123 - MIR SINE MIR -10 252 194 25 0 0 0 chr3 111321082 111321107 -106716051 + AT_rich Low_complexity Low_complexity 1 25 0 423 263 90 26 chr3 111321345 111321501 -106715657 - MLT1E LTR MaLR -2 591 426 4910 178 35 12 chr3 111323295 111324372 -106712786 - L1MA7 LINE L1 -2 6289 5186 1494 220 66 99 chr3 111324589 111325162 -106711996 - MLT2B3 LTR ERVL 0 554 1 210 336 41 41 chr3 111325162 111325308 -106711850 - L2 LINE L2 -555 2759 2614 899 319 50 14 chr3 111325522 111325882 -106711276 + LTR16B LTR ERVL 1 373 -91 210 37 0 0 chr3 111325973 111326000 -106711158 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 454 325 51 26 chr3 111326017 111326328 -106710830 - ERVL LTR ERVL -438 5326 5008 7819 220 25 18 chr3 111328326 111329768 -106707390 - L1 LINE L1 -1057 6508 5077 1875 143 52 33 chr3 111329768 111330133 -106707025 + THE1C LTR MaLR 1 372 -3 7819 220 25 18 chr3 111330133 111330682 -106706476 - L1 LINE L1 -2488 5077 4500 187 54 54 0 chr3 111330682 111330719 -106706439 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7819 220 25 18 chr3 111330719 111330771 -106706387 - L1 LINE L1 -3065 4500 4450 1068 288 79 23 chr3 111330764 111331678 -106705480 - L1 LINE L1 -3754 3811 2841 * 2358 181 38 2 chr3 111331691 111332165 -106704993 - L1MA4A LINE L1 -4 6503 6013 225 258 0 0 chr3 111332167 111332229 -106704929 + L1MC4 LINE L1 6629 6690 -1352 1681 187 11 0 chr3 111332710 111333016 -106704142 - AluSx SINE Alu 0 309 1 12671 211 29 10 chr3 111333017 111336711 -106700447 - L1MA4A LINE L1 -493 6014 2255 1304 179 12 24 chr3 111336731 111336982 -106700176 - AluSx SINE Alu -19 293 46 2417 284 62 20 chr3 111336983 111338490 -106698668 - L1MA4A LINE L1 -4106 2245 704 407 274 30 30 chr3 111338653 111338821 -106698337 - L1MA4A LINE L1 -6113 168 1 38 0 0 0 chr3 111339740 111339778 -106697380 + AT_rich Low_complexity Low_complexity 1 38 0 604 252 0 0 chr3 111339837 111339956 -106697202 + FLAM_C SINE Alu 1 119 -14 204 125 62 0 chr3 111340219 111340267 -106696891 + A-rich Low_complexity Low_complexity 5 55 0 531 303 142 0 chr3 111340637 111340848 -106696310 + L1MEc LINE L1 100 340 -6056 1025 125 0 0 chr3 111340861 111341005 -106696153 + AluSg/x SINE Alu 140 283 -29 207 0 0 0 chr3 111341008 111341031 -106696127 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 749 179 18 80 chr3 111342430 111342654 -106694504 - L1MA8 LINE L1 0 6291 6082 1770 154 20 41 chr3 111342655 111342998 -106694160 + L1MA6 LINE L1 5698 6033 -267 1849 211 41 13 chr3 111343143 111343608 -106693550 + MLT2D LTR ERVL 1 464 0 243 0 0 0 chr3 111343786 111343813 -106693345 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr3 111344172 111344194 -106692964 + AT_rich Low_complexity Low_complexity 1 22 0 2254 136 3 22 chr3 111344199 111344568 -106692590 + THE1B LTR MaLR 1 362 -2 3524 120 3 69 chr3 111344570 111345194 -106691964 + THE1B-int LTR MaLR 1 583 -997 3364 105 14 28 chr3 111345218 111345715 -106691443 + THE1B-int LTR MaLR 1091 1580 0 2137 133 67 3 chr3 111345715 111346046 -106691112 + THE1B LTR MaLR 1 352 -12 564 262 15 59 chr3 111346288 111346490 -106690668 - MIR SINE MIR -59 203 11 1742 145 26 54 chr3 111349468 111349854 -106687304 - THE1C LTR MaLR 0 375 1 2280 94 3 7 chr3 111350152 111350459 -106686699 + AluSg SINE Alu 4 309 -1 384 272 40 24 chr3 111351137 111351262 -106685896 - L2 LINE L2 -8 3305 3179 1118 214 21 21 chr3 111352292 111352624 -106684534 - MER33 DNA MER1_type -4 320 1 186 328 90 0 chr3 111353793 111353860 -106683298 + L2 LINE L2 3239 3311 -2 21 112 0 0 chr3 111353860 111353958 -106683200 + AT_rich Low_complexity Low_complexity 1 98 0 6184 213 26 6 chr3 111354523 111355918 -106681240 - L1PA15 LINE L1 -749 5397 3975 4663 147 16 13 chr3 111355907 111356675 -106680483 + L1PA15 LINE L1 5391 6160 -5 * 29 0 0 0 chr3 111356719 111356748 -106680410 + AT_rich Low_complexity Low_complexity 1 29 0 1173 232 113 13 chr3 111356792 111357102 -106680056 + L1MA3 LINE L1 19 359 -7206 1047 149 123 5 chr3 111357102 111357297 -106679861 + LTR12 LTR ERV1 17 234 -480 282 185 74 25 chr3 111357339 111357420 -106679738 + LTR12 LTR ERV1 205 289 -425 229 261 0 0 chr3 111357420 111357485 -106679673 + LTR30 LTR ERV1 556 620 -102 633 202 26 9 chr3 111357491 111357605 -106679553 + pTR5 LTR ERV1 51 166 -2272 564 272 122 0 chr3 111357612 111357759 -106679399 + L1MA3 LINE L1 349 513 -7052 10207 177 41 6 chr3 111357763 111359384 -106677774 + L1MA3 LINE L1 4062 5624 -2100 1747 163 5 56 chr3 111359384 111359758 -106677400 - THE1A LTR MaLR 0 355 1 10207 177 41 6 chr3 111359758 111361585 -106675573 + L1MA3 LINE L1 5624 7724 0 245 197 16 0 chr3 111361639 111361700 -106675458 + (CATATA)n Simple_repeat Simple_repeat 3 64 0 347 322 114 30 chr3 111361716 111362048 -106675110 - L1MC4a LINE L1 -1937 5871 5512 496 330 128 16 chr3 111362111 111362478 -106674680 - L1MC/D LINE L1 -1989 5819 5412 1416 193 56 7 chr3 111362562 111362858 -106674300 - AluJo SINE Alu 0 309 1 23 0 0 0 chr3 111362917 111362940 -106674218 + AT_rich Low_complexity Low_complexity 1 23 0 280 259 84 8 chr3 111363014 111363145 -106674013 - L1ME LINE L1 -365 5797 5657 2131 106 0 0 chr3 111363188 111363508 -106673650 - AluY SINE Alu 0 320 1 263 261 46 23 chr3 111363539 111363669 -106673489 - L1ME LINE L1 -668 5494 5362 25 97 0 0 chr3 111363782 111363844 -106673314 + AT_rich Low_complexity Low_complexity 1 62 0 414 304 56 68 chr3 111364249 111364716 -106672442 - L1ME LINE L1 -1363 4783 4323 250 160 40 27 chr3 111364734 111364809 -106672349 + (TTAAA)n Simple_repeat Simple_repeat 1 76 0 562 311 35 15 chr3 111364809 111365211 -106671947 - L1ME LINE L1 -3345 2801 2392 481 270 59 80 chr3 111365565 111365854 -106671304 - L1ME2 LINE L1 -15 6149 5867 658 289 95 0 chr3 111365873 111366249 -106670909 - L1MC4a LINE L1 -700 5478 5053 572 234 69 78 chr3 111366381 111366651 -106670507 - MLT1F1 LTR MaLR -280 287 23 366 268 102 71 chr3 111366700 111367085 -106670073 - L1ME2 LINE L1 -450 5671 5282 2554 195 50 0 chr3 111367448 111367889 -106669269 + MER70A LTR ERVL 1 463 -9 1752 50 0 0 chr3 111368092 111368313 -106668845 + MLT2A1 LTR ERVL 3 223 -221 1114 157 5 51 chr3 111368426 111368589 -106668569 - LTR45B LTR ERV1 -280 209 57 1868 118 10 10 chr3 111368589 111368895 -106668263 + AluSx SINE Alu 2 307 -5 1114 157 5 51 chr3 111368895 111368948 -106668210 - LTR45B LTR ERV1 -432 57 3 423 220 98 37 chr3 111368960 111369021 -106668137 - L1MC4a LINE L1 -1280 4866 4810 2358 75 0 7 chr3 111369021 111369328 -106667830 - AluY SINE Alu -6 305 1 423 220 98 37 chr3 111369328 111369467 -106667691 - L1MC4a LINE L1 -1336 4810 4641 217 226 26 43 chr3 111371027 111371142 -106666016 + G-rich Low_complexity Low_complexity 1 113 0 663 268 157 64 chr3 111371358 111371522 -106665636 - L1ME2 LINE L1 -993 5153 5006 2688 161 13 11 chr3 111371522 111371988 -106665170 - MLT1C LTR MaLR 0 467 1 663 268 157 64 chr3 111371988 111372881 -106664277 - L1ME2 LINE L1 -1140 5006 3998 1245 248 126 21 chr3 111372897 111373404 -106663754 - MLT1E3 LTR MaLR 0 624 57 323 251 156 45 chr3 111373429 111373987 -106663171 - L1ME2 LINE L1 -2210 3936 3317 231 253 0 25 chr3 111374060 111374139 -106663019 + T-rich Low_complexity Low_complexity 2 78 0 3182 125 16 30 chr3 111375091 111375586 -106661572 + LOR1a LTR ERV1 10 497 0 21 0 0 0 chr3 111376030 111376051 -106661107 + AT_rich Low_complexity Low_complexity 1 21 0 299 320 65 7 chr3 111376428 111376581 -106660577 + MIR SINE MIR 32 193 -69 1972 119 7 3 chr3 111376585 111376899 -106660259 + AluSq SINE Alu 1 313 0 3079 281 79 25 chr3 111377501 111378741 -106658417 - L2 LINE L2 -82 3231 1835 181 246 66 33 chr3 111378979 111379040 -106658118 + L2 LINE L2 3192 3254 -59 194 406 8 8 chr3 111380252 111380375 -106656783 - MIR3 SINE MIR -8 200 78 1760 187 61 0 chr3 111381897 111382239 -106654919 - MLT1A1 LTR MaLR -2 363 1 1553 177 18 46 chr3 111382239 111382567 -106654591 - MLT1A1-int LTR MaLR 0 1735 1417 * 3210 215 57 9 chr3 111382558 111383246 -106653912 - MLT1A1-int LTR MaLR -1014 721 1 1430 188 87 64 chr3 111383246 111383603 -106653555 - MLT1A1 LTR MaLR 0 365 1 26 0 0 0 chr3 111384405 111384431 -106652727 + AT_rich Low_complexity Low_complexity 1 26 0 307 277 0 11 chr3 111385395 111385489 -106651669 - MLT1I LTR MaLR 0 409 317 255 221 191 0 chr3 111385519 111385587 -106651571 + L2 LINE L2 3232 3312 -1 1592 219 24 27 chr3 111385833 111386208 -106650950 - MLT1A2 LTR MaLR 0 374 1 38 22 0 0 chr3 111386485 111386530 -106650628 + AT_rich Low_complexity Low_complexity 1 45 0 817 228 10 21 chr3 111387453 111387646 -106649512 - AluJb SINE Alu -16 296 106 1204 195 43 36 chr3 111387942 111388244 -106648914 + AluJo SINE Alu 1 304 -8 22 35 0 0 chr3 111388267 111388296 -106648862 + AT_rich Low_complexity Low_complexity 1 29 0 333 235 211 35 chr3 111388418 111388938 -106648220 - L1MCa LINE L1 -3976 3146 2535 343 253 0 33 chr3 111388969 111389060 -106648098 + MLT1D LTR MaLR 1 88 -538 754 212 80 73 chr3 111389074 111389324 -106647834 + MLT1A1 LTR MaLR 3 314 -51 582 88 0 0 chr3 111389324 111389404 -106647754 + MADE1 DNA Mariner 1 80 0 754 212 80 73 chr3 111389404 111389457 -106647701 + MLT1A1 LTR MaLR 314 365 0 6655 226 81 25 chr3 111389457 111391067 -106646091 + MLT1A1-int LTR MaLR 5 1704 -31 1142 249 33 58 chr3 111391088 111391453 -106645705 + MLT1A1 LTR MaLR 7 362 -3 1574 210 39 21 chr3 111391468 111391849 -106645309 + MLT1D LTR MaLR 116 503 -2 1190 283 65 41 chr3 111391897 111393055 -106644103 - L1MCa LINE L1 -4600 2522 1129 247 276 78 42 chr3 111393449 111393641 -106643517 - L1MCa LINE L1 -6145 278 80 21 57 0 0 chr3 111393728 111393763 -106643395 + AT_rich Low_complexity Low_complexity 1 35 0 192 77 0 0 chr3 111394765 111394791 -106642367 + (TC)n Simple_repeat Simple_repeat 1 26 0 1239 209 16 28 chr3 111396461 111396714 -106640444 + AluJo SINE Alu 40 289 -23 741 120 29 3 chr3 111396943 111397076 -106640082 - L1M4 LINE L1 -361 5813 5678 1253 114 20 45 chr3 111397186 111397431 -106639727 + L1PA13 LINE L1 5924 6162 -1 661 204 54 68 chr3 111398175 111398322 -106638836 - L1MD3 LINE L1 -2 7985 6213 489 240 58 23 chr3 111401033 111401287 -106635871 + MLT1A1 LTR MaLR 1 353 -12 1425 177 27 78 chr3 111401295 111401629 -106635529 + MLT1A1-int LTR MaLR 1 317 -1418 2068 289 15 50 chr3 111401659 111402343 -106634815 + MLT1A1-int LTR MaLR 809 1468 -267 300 154 0 0 chr3 111402431 111402483 -106634675 + (CA)n Simple_repeat Simple_repeat 1 52 0 2310 207 119 2 chr3 111402497 111402984 -106634174 + MER44D DNA MER2_type 6 604 -1 298 306 211 30 chr3 111403769 111404105 -106633053 - L2 LINE L2 -543 2771 2375 693 180 84 154 chr3 111404137 111404448 -106632710 + MLT1A1 LTR MaLR 78 357 -8 241 417 0 17 chr3 111405482 111405597 -106631561 - MER5B DNA MER1_type -1 177 65 1785 168 25 63 chr3 111405597 111406070 -106631088 + MLT2A2 LTR ERVL 1 359 -85 223 311 66 0 chr3 111406817 111406878 -106630280 + MIR SINE MIR 84 148 -114 901 234 37 19 chr3 111406925 111407139 -106630019 + MER58A DNA MER1_type 1 218 -6 27 29 0 0 chr3 111408135 111408169 -106628989 + AT_rich Low_complexity Low_complexity 1 34 0 437 318 201 5 chr3 111408291 111408505 -106628653 + MIR SINE MIR 6 261 -1 6256 124 12 5 chr3 111408642 111409631 -106627527 + L1MA3 LINE L1 5305 6300 -5 353 22 22 0 chr3 111410541 111410587 -106626571 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 22 35 0 0 chr3 111410735 111410764 -106626394 + AT_rich Low_complexity Low_complexity 1 29 0 657 325 111 53 chr3 111411308 111411899 -106625259 - L2 LINE L2 -16 3297 2650 1141 289 99 34 chr3 111411918 111412046 -106625112 - L2 LINE L2 -463 2851 2733 2041 125 0 7 chr3 111412046 111412342 -106624816 + AluSx SINE Alu 1 294 -18 1141 289 99 34 chr3 111412342 111412708 -106624450 - L2 LINE L2 -581 2733 2325 23 0 0 0 chr3 111413156 111413179 -106623979 + AT_rich Low_complexity Low_complexity 1 23 0 1314 164 149 14 chr3 111414336 111414611 -106622547 - AluJo SINE Alu 0 312 1 1708 206 8 0 chr3 111415116 111415476 -106621682 - L1MA9 LINE L1 0 6312 5950 31 58 0 0 chr3 111416239 111416291 -106620867 + AT_rich Low_complexity Low_complexity 1 52 0 227 252 17 70 chr3 111416393 111416508 -106620650 - L1ME4a LINE L1 -74 6047 5939 22 0 0 0 chr3 111418934 111418956 -106618202 + AT_rich Low_complexity Low_complexity 1 22 0 1827 167 51 14 chr3 111419175 111419528 -106617630 - MER47A DNA MER2_type 0 366 1 294 288 158 7 chr3 111422496 111422635 -106614523 + MIR SINE MIR 102 261 -1 204 182 0 0 chr3 111423738 111423782 -106613376 + A-rich Low_complexity Low_complexity 1 44 0 332 214 60 0 chr3 111425557 111425641 -106611517 + L1MC4 LINE L1 6615 6703 -1339 876 191 6 13 chr3 111425642 111425799 -106611359 - AluJb SINE Alu -27 285 130 268 152 0 0 chr3 111425832 111425878 -106611280 - FLAM_A SINE Alu -2 131 86 183 279 0 0 chr3 111426004 111426047 -106611111 + MIR SINE MIR 111 153 -109 241 321 70 79 chr3 111426512 111426855 -106610303 + L2 LINE L2 2070 2409 -905 22 35 0 0 chr3 111426868 111426897 -106610261 + AT_rich Low_complexity Low_complexity 1 29 0 395 318 36 63 chr3 111427333 111427585 -106609573 + MIR SINE MIR 18 262 0 1887 134 3 22 chr3 111428694 111429046 -106608112 - MER4A LTR ERV1 0 664 261 637 131 0 10 chr3 111429046 111429145 -106608013 - MER4A LTR ERV1 -566 98 1 1176 245 21 55 chr3 111429331 111429658 -106607500 + LTR40a LTR ERVL 1 316 -203 331 251 37 107 chr3 111430090 111430277 -106606881 - MIR SINE MIR -32 230 57 388 345 50 29 chr3 111430586 111430824 -106606334 + MER102a DNA MER1_type 88 330 0 36 62 0 0 chr3 111431421 111431485 -106605673 + AT_rich Low_complexity Low_complexity 1 64 0 381 361 32 28 chr3 111431854 111432106 -106605052 + MIR SINE MIR 5 257 -5 1092 218 0 0 chr3 111432132 111432320 -106604838 + Tigger7 DNA MER2_type 1 188 -545 798 117 0 29 chr3 111432415 111432552 -106604606 - L1P3 LINE L1 -5181 1280 1148 37049 90 12 14 chr3 111432902 111439063 -106598095 + L1PA6 LINE L1 11 6151 -3 22 80 0 0 chr3 111439917 111439967 -106597191 + AT_rich Low_complexity Low_complexity 1 50 0 693 243 109 4 chr3 111440808 111441075 -106596083 + L1ME LINE L1 857 1151 -5054 324 221 48 19 chr3 111441131 111441235 -106595923 + L1ME LINE L1 1392 1498 -4898 215 203 17 17 chr3 111441692 111441751 -106595407 + (TA)n Simple_repeat Simple_repeat 2 60 0 369 302 81 52 chr3 111441817 111442065 -106595093 + L1MEd LINE L1 991 1245 -4874 23 0 0 0 chr3 111442436 111442459 -106594699 + AT_rich Low_complexity Low_complexity 1 23 0 599 92 64 18 chr3 111443671 111443780 -106593378 + MLT2A1 LTR ERVL 331 444 0 59 38 0 0 chr3 111443885 111443965 -106593193 + AT_rich Low_complexity Low_complexity 1 80 0 257 310 35 40 chr3 111444384 111444453 -106592705 + L1MC4a LINE L1 5758 5826 -1982 1486 204 3 23 chr3 111444453 111444757 -106592401 + AluJo SINE Alu 1 298 -14 257 310 35 40 chr3 111444757 111444861 -106592297 + L1MC4a LINE L1 5826 5930 -1878 24 0 0 0 chr3 111445070 111445094 -106592064 + AT_rich Low_complexity Low_complexity 1 24 0 305 290 14 21 chr3 111445278 111445423 -106591735 + (TA)n Simple_repeat Simple_repeat 2 145 0 280 275 9 18 chr3 111445780 111445889 -106591269 + L1MC/D LINE L1 5666 5773 -2035 1519 176 44 4 chr3 111445915 111446037 -106591121 + AluJb SINE Alu 1 117 -189 351 0 0 0 chr3 111446037 111446076 -106591082 + (CA)n Simple_repeat Simple_repeat 2 40 0 1519 176 44 4 chr3 111446076 111446248 -106590910 + AluJb SINE Alu 117 306 0 607 293 61 0 chr3 111446270 111446451 -106590707 + MER20 DNA MER1_type 1 192 -27 1045 217 84 40 chr3 111446451 111446774 -106590384 - MER2 DNA MER2_type -1 344 1 360 312 115 4 chr3 111447255 111447524 -106589634 + HAL1 LINE L1 1121 1419 -1088 2166 120 0 0 chr3 111447560 111447868 -106589290 - AluSg SINE Alu -2 308 1 258 32 0 0 chr3 111447892 111447923 -106589235 + (CA)n Simple_repeat Simple_repeat 2 32 0 510 326 107 16 chr3 111447999 111448318 -106588840 + MLT1J2 LTR MaLR 103 450 0 337 255 243 35 chr3 111448355 111448610 -106588548 + HAL1 LINE L1 1811 2118 -389 236 304 0 0 chr3 111448690 111448759 -106588399 + HAL1 LINE L1 2324 2392 -115 198 208 0 0 chr3 111448852 111448900 -106588258 + (TATG)n Simple_repeat Simple_repeat 3 50 0 30 45 0 0 chr3 111448901 111448945 -106588213 + AT_rich Low_complexity Low_complexity 1 44 0 245 250 0 0 chr3 111449174 111449226 -106587932 + LTR30 LTR ERV1 1 52 -670 253 163 0 20 chr3 111449226 111449275 -106587883 + LTR12 LTR ERV1 53 100 -614 2015 136 6 138 chr3 111449275 111449746 -106587412 + LTR12 LTR ERV1 76 484 -230 1513 164 4 50 chr3 111452969 111453249 -106583909 - AluJo SINE Alu -39 273 7 23 54 0 0 chr3 111454093 111454130 -106583028 + AT_rich Low_complexity Low_complexity 1 37 0 448 248 54 13 chr3 111454396 111454545 -106582613 - MLT1D LTR MaLR -349 156 2 243 250 0 0 chr3 111454791 111454859 -106582299 + (CATATA)n Simple_repeat Simple_repeat 3 70 0 761 259 172 30 chr3 111455366 111455807 -106581351 + MLT1D LTR MaLR 2 505 0 255 61 0 0 chr3 111455994 111456027 -106581131 + (TG)n Simple_repeat Simple_repeat 1 33 0 * 330 45 0 0 chr3 111456026 111456070 -106581088 + (GA)n Simple_repeat Simple_repeat 1 44 0 538 171 0 0 chr3 111456619 111456707 -106580451 - L1P4 LINE L1 -396 5772 5685 2233 85 55 0 chr3 111456709 111457039 -106580119 + L1PA13 LINE L1 5813 6160 -3 257 122 0 0 chr3 111457997 111458038 -106579120 + Harlequin LTR ERV1 6353 6393 -503 213 154 0 0 chr3 111458719 111458758 -106578400 + GA-rich Low_complexity Low_complexity 4 42 0 792 160 13 21 chr3 111458788 111459032 -106578126 + GA-rich Low_complexity Low_complexity 1 241 0 248 118 0 0 chr3 111460416 111460450 -106576708 - MADE1 DNA Mariner -44 36 3 1553 271 103 2 chr3 111460542 111461007 -106576151 - MLT1E2 LTR MaLR -4 622 111 262 233 0 0 chr3 111461898 111461958 -106575200 + (TA)n Simple_repeat Simple_repeat 2 61 0 35 41 0 0 chr3 111462196 111462245 -106574913 + AT_rich Low_complexity Low_complexity 1 49 0 186 204 0 161 chr3 111462756 111462849 -106574309 + MER5A DNA MER1_type 62 139 -50 2254 97 0 3 chr3 111462864 111463174 -106573984 - AluSc SINE Alu 0 309 1 23 33 0 0 chr3 111463626 111463656 -106573502 + AT_rich Low_complexity Low_complexity 1 30 0 573 239 89 33 chr3 111463849 111464062 -106573096 - MIR SINE MIR -34 228 4 189 333 59 37 chr3 111464289 111464424 -106572734 + L2 LINE L2 3152 3289 -24 24 77 0 0 chr3 111465197 111465249 -106571909 + AT_rich Low_complexity Low_complexity 1 52 0 2014 122 0 0 chr3 111465977 111466263 -106570895 - AluY SINE Alu -25 286 1 38 0 0 0 chr3 111469755 111469793 -106567365 + AT_rich Low_complexity Low_complexity 1 38 0 197 179 26 0 chr3 111469906 111469945 -106567213 - MIR SINE MIR -124 138 99 341 316 31 41 chr3 111470500 111470696 -106566462 - L2 LINE L2 -4 3309 3116 246 32 0 0 chr3 111473235 111473266 -106563892 + (CA)n Simple_repeat Simple_repeat 2 32 0 494 200 11 0 chr3 111473671 111473761 -106563397 - FLAM_A SINE Alu -18 124 34 2804 174 14 6 chr3 111474251 111474768 -106562390 - L1M3 LINE L1 -358 5810 5290 1121 150 16 5 chr3 111474952 111475139 -106562019 + AluJo SINE Alu 88 276 -36 344 22 22 0 chr3 111475154 111475199 -106561959 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 289 120 40 0 chr3 111475583 111475633 -106561525 - AluSc SINE Alu -3 296 245 1896 151 0 44 chr3 111476303 111476620 -106560538 - AluSx SINE Alu -9 303 1 448 239 141 5 chr3 111476623 111476807 -106560351 - L1M3 LINE L1 -825 5321 5113 1845 134 10 36 chr3 111476945 111477251 -106559907 - AluSg SINE Alu -12 298 1 1066 197 33 76 chr3 111478461 111478791 -106558367 - MLT1B LTR MaLR -74 316 1 814 150 31 8 chr3 111478836 111478963 -106558195 + AluJo SINE Alu 6 135 -177 2038 209 83 17 chr3 111479357 111479836 -106557322 + MER9 LTR ERVK 1 511 0 827 199 48 56 chr3 111479836 111480333 -106556825 + HERVK9 LTR ERVK 1 448 -5497 306 213 80 27 chr3 111480589 111480664 -106556494 - L2 LINE L2 -8 3264 3186 2300 166 33 40 chr3 111481839 111482329 -106554829 - MER4D LTR ERV1 -123 780 51 803 155 16 0 chr3 111482352 111482481 -106554677 - AluSg1 SINE Alu -177 132 2 1908 74 4 12 chr3 111483245 111483502 -106553656 - AluY SINE Alu -56 255 1 1217 159 31 8 chr3 111484094 111484332 -106552826 - L1ME LINE L1 -446 5716 5471 333 0 0 0 chr3 111484332 111484369 -106552789 + (TG)n Simple_repeat Simple_repeat 2 38 0 2007 133 11 0 chr3 111484369 111484654 -106552504 - AluSx SINE Alu -8 304 17 1731 178 27 3 chr3 111484683 111485015 -106552143 + L1PA15 LINE L1 5659 5998 -168 289 260 71 39 chr3 111485824 111485978 -106551180 + MER67A LTR ERV1 385 543 0 204 228 35 0 chr3 111486559 111486616 -106550542 - MIR SINE MIR -41 221 163 480 278 122 13 chr3 111486635 111486865 -106550293 - L1ME2 LINE L1 -9 6155 5901 1916 136 10 3 chr3 111486866 111487168 -106549990 - AluSg SINE Alu -6 304 1 2058 134 3 22 chr3 111487179 111487493 -106549665 - AluSx SINE Alu -4 308 1 538 93 82 41 chr3 111487933 111488030 -106549128 + FRAM SINE Alu 60 160 -16 2354 96 3 3 chr3 111488031 111488343 -106548815 + AluSp SINE Alu 1 312 -1 600 183 134 0 chr3 111488773 111488915 -106548243 - MER5A DNA MER1_type 0 189 29 2107 134 0 3 chr3 111489110 111489408 -106547750 - AluSx SINE Alu -15 297 1 1643 222 93 50 chr3 111491972 111492490 -106544668 - MLT1F LTR MaLR -2 540 1 885 226 0 6 chr3 111492494 111492653 -106544505 - FRAM SINE Alu -8 158 1 584 35 0 71 chr3 111492692 111492777 -106544381 - L1PA3 LINE L1 0 6155 6077 509 199 22 22 chr3 111492887 111493023 -106544135 + L1PA15 LINE L1 6028 6163 -2 24 0 0 0 chr3 111493193 111493217 -106543941 + AT_rich Low_complexity Low_complexity 1 24 0 471 184 0 11 chr3 111493217 111493304 -106543854 - FRAM SINE Alu -64 112 27 376 149 0 0 chr3 111493308 111493371 -106543787 - Alu SINE Alu -255 53 1 1822 170 104 90 chr3 111493460 111493960 -106543198 - LTR54 LTR ERV1 0 510 4 332 299 43 34 chr3 111494384 111494501 -106542657 - MIR SINE MIR -106 156 39 363 318 107 25 chr3 111496968 111497210 -106539948 + MIR SINE MIR 1 262 0 302 250 0 0 chr3 111497343 111497415 -106539743 + CT-rich Low_complexity Low_complexity 2 73 0 641 215 15 146 chr3 111497771 111497921 -106539237 - MER45A DNA AcHobo -1403 178 60 1365 55 49 16 chr3 111497921 111498104 -106539054 - L1PA3 LINE L1 -4 6151 5963 641 215 15 146 chr3 111498104 111498158 -106539000 - MER45A DNA AcHobo -1521 60 1 203 243 86 29 chr3 111499144 111499214 -106537944 - MIR SINE MIR -111 151 78 207 263 42 95 chr3 111499697 111499792 -106537366 - MER5B DNA MER1_type -6 172 83 210 186 17 17 chr3 111499805 111499864 -106537294 + (TG)n Simple_repeat Simple_repeat 1 59 0 200 222 32 16 chr3 111500034 111500097 -106537061 + A-rich Low_complexity Low_complexity 1 64 0 1038 266 126 52 chr3 111500112 111500754 -106536404 + L1MC4 LINE L1 6315 6909 -1133 2372 64 10 0 chr3 111500754 111501051 -106536107 - AluY SINE Alu -11 300 1 1038 266 126 52 chr3 111501051 111501797 -106535361 + L1MC4 LINE L1 6909 7850 -192 613 139 5 206 chr3 111501871 111502080 -106535078 - 7SK RNA RNA -4 189 23 534 122 0 12 chr3 111502080 111502162 -106534996 + L1MA4 LINE L1 5866 5946 -354 * 1575 151 13 27 chr3 111502160 111502458 -106534700 + L1M2 LINE L1 4082 4375 -1771 1081 155 28 12 chr3 111502452 111502799 -106534359 + L1M2 LINE L1 5172 5521 -743 * 2465 56 0 0 chr3 111503297 111503585 -106533573 - AluY SINE Alu -21 290 3 703 274 78 69 chr3 111503596 111504335 -106532823 + L1MC4 LINE L1 7112 7850 -192 613 139 5 206 chr3 111504409 111504618 -106532540 - 7SK RNA RNA -4 189 23 534 122 0 12 chr3 111504618 111504700 -106532458 + L1MA4 LINE L1 5866 5946 -354 * 1575 151 13 27 chr3 111504698 111504996 -106532162 + L1MA7 LINE L1 4082 4375 -1771 * 3153 162 13 9 chr3 111504990 111505664 -106531494 + L1MA7 LINE L1 5172 5847 -453 1588 161 63 18 chr3 111505665 111506000 -106531158 + L1MA7 LINE L1 5940 6289 -2 21 89 0 0 chr3 111506002 111506058 -106531100 + AT_rich Low_complexity Low_complexity 1 56 0 5324 180 23 22 chr3 111506245 111507475 -106529683 + L1PA16 LINE L1 4125 5359 -807 839 176 0 0 chr3 111507475 111507606 -106529552 + FLAM_C SINE Alu 3 133 0 5324 180 23 22 chr3 111507606 111508406 -106528752 + L1PA16 LINE L1 5359 6157 -9 591 256 34 15 chr3 111508424 111508637 -106528521 + L1ME4a LINE L1 5653 5868 -253 225 0 0 0 chr3 111509039 111509064 -106528094 + (T)n Simple_repeat Simple_repeat 1 25 0 200 141 62 31 chr3 111509666 111509730 -106527428 + (TTAA)n Simple_repeat Simple_repeat 4 69 0 251 338 8 30 chr3 111509758 111509891 -106527267 - MIR SINE MIR -10 252 123 441 222 59 7 chr3 111512718 111512853 -106524305 - MIR SINE MIR 0 262 121 1089 181 29 55 chr3 111513347 111513656 -106523502 + MER33 DNA MER1_type 1 301 -23 1831 183 23 34 chr3 111513803 111514153 -106523005 + MER7A DNA MER2_type 3 346 0 462 125 0 0 chr3 111514630 111514694 -106522464 + (T)n Simple_repeat Simple_repeat 1 64 0 183 326 90 0 chr3 111514781 111514870 -106522288 + MIR SINE MIR 11 107 -155 856 138 11 101 chr3 111515418 111515607 -106521551 + THE1B LTR MaLR 191 362 -2 11574 121 6 11 chr3 111515616 111517124 -106520034 + THE1B-int LTR MaLR 1 1502 -78 2203 121 0 0 chr3 111517124 111517422 -106519736 + AluSp SINE Alu 1 298 -15 11574 121 6 11 chr3 111517422 111517501 -106519657 + THE1B-int LTR MaLR 1502 1580 0 2074 141 19 51 chr3 111517502 111517877 -106519281 + THE1B LTR MaLR 2 364 0 2050 198 67 32 chr3 111517922 111518397 -106518761 + LTR22B LTR ERVK 1 492 0 225 258 67 83 chr3 111518398 111518415 -106518743 + MIR SINE MIR 137 153 -109 2052 122 17 7 chr3 111518415 111518710 -106518448 - AluSc SINE Alu -11 298 1 225 258 67 83 chr3 111518710 111518812 -106518346 + MIR SINE MIR 153 254 -8 1589 192 7 42 chr3 111518813 111519120 -106518038 - AluJb SINE Alu -13 299 4 260 313 72 24 chr3 111519138 111519304 -106517854 - MLT1I LTR MaLR -2 407 234 22 0 0 0 chr3 111522079 111522101 -106515057 + AT_rich Low_complexity Low_complexity 1 22 0 237 323 31 31 chr3 111523594 111523690 -106513468 + L2 LINE L2 3200 3295 -18 24 32 0 0 chr3 111524304 111524335 -106512823 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr3 111524893 111524924 -106512234 + AT_rich Low_complexity Low_complexity 1 31 0 1645 186 10 10 chr3 111524925 111525226 -106511932 - AluJo SINE Alu -11 301 1 559 162 10 0 chr3 111526380 111526479 -106510679 - L1PA16 LINE L1 -9 6157 6058 957 125 0 0 chr3 111526484 111526628 -106510530 + L1P4 LINE L1 5380 5523 -642 1667 166 11 4 chr3 111526628 111526906 -106510252 - MER47A DNA MER2_type -85 281 2 731 268 56 63 chr3 111527179 111527682 -106509476 - MER77 LTR ERV1 -6 599 95 251 322 27 54 chr3 111527651 111527800 -106509358 - MER77 LTR ERV1 -407 198 54 * 390 342 133 4 chr3 111528082 111528307 -106508851 + L2 LINE L2 2227 2480 -834 685 125 39 0 chr3 111529271 111529375 -106507783 + AluSg/x SINE Alu 192 299 -10 372 263 32 0 chr3 111529375 111529452 -106507706 - MER31B LTR ERV1 -70 396 317 1508 201 53 56 chr3 111529452 111529950 -106507208 - MER39 LTR ERV1 0 707 1 959 186 24 12 chr3 111529950 111530227 -106506931 - MER31B LTR ERV1 -144 322 1 22 0 0 0 chr3 111531093 111531115 -106506043 + AT_rich Low_complexity Low_complexity 1 22 0 1944 92 0 0 chr3 111532214 111532495 -106504663 + L1PA13 LINE L1 5878 6158 -5 299 281 11 0 chr3 111533638 111533727 -106503431 + (CATATA)n Simple_repeat Simple_repeat 1 90 0 242 294 60 62 chr3 111534091 111534232 -106502926 + L1ME4a LINE L1 5636 5776 -345 1407 199 40 4 chr3 111534232 111534508 -106502650 - AluJo SINE Alu -26 286 1 242 294 60 62 chr3 111534508 111534835 -106502323 + L1ME4a LINE L1 5776 6103 -18 1608 247 17 39 chr3 111535939 111536261 -106500897 - MER31B LTR ERV1 -9 457 147 3213 173 74 8 chr3 111536261 111536922 -106500236 - MER39 LTR ERV1 -2 705 1 1608 247 17 39 chr3 111536922 111537064 -106500094 - MER31B LTR ERV1 -319 147 3 183 261 22 0 chr3 111537074 111537120 -106500038 - MIR SINE MIR -107 155 109 1560 180 25 44 chr3 111537229 111537546 -106499612 - AluJb SINE Alu -1 311 1 1550 218 59 30 chr3 111537633 111538137 -106499021 - MER39 LTR ERV1 0 707 4 285 75 0 0 chr3 111538203 111538243 -106498915 + (CA)n Simple_repeat Simple_repeat 1 40 0 24 85 0 0 chr3 111540481 111540540 -106496618 + AT_rich Low_complexity Low_complexity 1 59 0 1916 162 19 35 chr3 111541274 111541644 -106495514 + THE1B LTR MaLR 1 364 0 11152 101 18 1 chr3 111541644 111543198 -106493960 + THE1B-int LTR MaLR 1 1580 0 2097 134 22 27 chr3 111543198 111543564 -106493594 + THE1B LTR MaLR 1 364 0 220 120 20 40 chr3 111543820 111543870 -106493288 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 48 67 0 0 chr3 111543870 111543960 -106493198 + AT_rich Low_complexity Low_complexity 1 90 0 28 71 0 0 chr3 111543998 111544054 -106493104 + AT_rich Low_complexity Low_complexity 1 56 0 34 42 0 0 chr3 111544694 111544742 -106492416 + AT_rich Low_complexity Low_complexity 1 48 0 1309 267 32 44 chr3 111544770 111545205 -106491953 + MLT2B1 LTR ERVL 41 470 -50 261 0 0 0 chr3 111545206 111545235 -106491923 + (TG)n Simple_repeat Simple_repeat 2 30 0 22 0 0 0 chr3 111545345 111545367 -106491791 + AT_rich Low_complexity Low_complexity 1 22 0 1933 168 66 6 chr3 111545684 111546175 -106490983 + L1MA7 LINE L1 5664 6290 -1 1092 191 29 0 chr3 111546347 111546551 -106490607 - MER2 DNA MER2_type -135 210 1 480 287 73 0 chr3 111546565 111546715 -106490443 - MIR SINE MIR -48 214 54 2284 100 0 0 chr3 111546836 111547146 -106490012 + AluY SINE Alu 1 310 -1 232 241 89 54 chr3 111547600 111547712 -106489446 + MLT1J2 LTR MaLR 279 394 -56 27 0 0 0 chr3 111547963 111547990 -106489168 + AT_rich Low_complexity Low_complexity 1 27 0 1412 177 49 0 chr3 111548138 111548426 -106488732 + MER33 DNA MER1_type 1 302 -22 951 254 64 3 chr3 111548627 111548954 -106488204 - LTR37A LTR ERV1 -2 424 78 22 56 0 0 chr3 111549043 111549079 -106488079 + AT_rich Low_complexity Low_complexity 1 36 0 1010 226 66 113 chr3 111549278 111549730 -106487428 + MLT1E2 LTR MaLR 3 433 -193 33 25 0 0 chr3 111549918 111549958 -106487200 + AT_rich Low_complexity Low_complexity 1 40 0 206 346 0 0 chr3 111552259 111552360 -106484798 + A-rich Low_complexity Low_complexity 4 104 0 3335 158 13 0 chr3 111553162 111553712 -106483446 - Tigger4(Zombi) DNA MER2_type 0 2731 2175 1469 180 14 25 chr3 111553712 111554028 -106483130 + AluJb SINE Alu 1 313 0 1048 207 0 0 chr3 111554047 111554221 -106482937 - Tigger4(Zombi) DNA MER2_type -2557 174 1 331 172 16 16 chr3 111554173 111554237 -106482921 + MER46A DNA MER2_type 97 160 -76 * 297 261 52 39 chr3 111556629 111556782 -106480376 + HAL1b LINE L1 755 909 -439 565 296 39 17 chr3 111557168 111557401 -106479757 + L1MCc LINE L1 29 266 -6157 637 298 39 52 chr3 111557488 111557645 -106479513 + L1MCc LINE L1 1398 1556 -5385 2301 94 7 0 chr3 111557645 111557954 -106479204 + AluY SINE Alu 1 311 0 637 298 39 52 chr3 111557954 111558406 -106478752 + L1MCc LINE L1 1556 1999 -4942 * 1083 271 65 48 chr3 111558402 111559091 -106478067 + L1M4 LINE L1 3223 3923 -2223 25 31 0 0 chr3 111560363 111560395 -106476763 + AT_rich Low_complexity Low_complexity 1 32 0 672 220 0 0 chr3 111560632 111560750 -106476408 - FLAM_C SINE Alu -25 118 1 328 260 116 19 chr3 111561646 111561826 -106475332 - MLT1G1 LTR MaLR 0 595 348 25 0 0 0 chr3 111562909 111562934 -106474224 + AT_rich Low_complexity Low_complexity 1 25 0 321 340 19 13 chr3 111564336 111564495 -106472663 + MLT1J1 LTR MaLR 287 446 0 839 240 119 92 chr3 111564996 111565451 -106471707 + MLT1D LTR MaLR 1 505 0 746 288 139 48 chr3 111565451 111565916 -106471242 - MLT1F LTR MaLR -34 508 1 327 229 70 45 chr3 111566224 111566381 -106470777 + L1ME1 LINE L1 6004 6164 -2 291 281 5 29 chr3 111566470 111566675 -106470483 + L1M4 LINE L1 3624 3989 -2157 381 315 60 21 chr3 111567139 111567346 -106469812 + MLT1J LTR MaLR 245 561 -54 587 275 129 68 chr3 111567551 111568063 -106469095 - MLT1H LTR MaLR 0 555 13 208 262 0 49 chr3 111568897 111568958 -106468200 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 1017 202 53 66 chr3 111571014 111571450 -106465708 - MER76 LTR ERV -195 493 1 2071 240 76 82 chr3 111571454 111571679 -106465479 - L1MCb LINE L1 -5088 957 732 2424 151 50 17 chr3 111571679 111572097 -106465061 + MSTB1 LTR MaLR 1 432 0 2071 240 76 82 chr3 111572097 111572797 -106464361 - L1MCb LINE L1 -5313 732 38 480 303 87 46 chr3 111572829 111573047 -106464111 + MLT1J LTR MaLR 230 456 -55 2504 60 7 0 chr3 111573494 111573795 -106463363 + AluY SINE Alu 1 303 -8 246 62 0 0 chr3 111576219 111576251 -106460907 + (A)n Simple_repeat Simple_repeat 1 32 0 457 304 141 5 chr3 111576692 111576912 -106460246 - MIR SINE MIR 0 262 13 2454 163 21 61 chr3 111578128 111578636 -106458522 - L1MA7 LINE L1 0 6300 5869 264 30 0 0 chr3 111578636 111578669 -106458489 + (TG)n Simple_repeat Simple_repeat 2 34 0 2454 163 21 61 chr3 111578669 111578915 -106458243 - L1MA7 LINE L1 -431 5869 5615 699 240 179 5 chr3 111578934 111579326 -106457832 - MER69 DNA AcHobo -55 2471 2012 * 1462 284 86 11 chr3 111579318 111579856 -106457302 - MER69 DNA AcHobo -1948 578 1 648 255 69 21 chr3 111579893 111580081 -106457077 - MER63A DNA MER1_type -12 198 2 1975 141 7 122 chr3 111580912 111581353 -106455805 + MLT1B LTR MaLR 1 390 0 194 383 67 35 chr3 111582585 111582901 -106454257 + L2 LINE L2 1344 1669 -1645 1954 212 93 23 chr3 111582913 111583385 -106453773 - MLT1D LTR MaLR 0 505 1 482 320 39 50 chr3 111583404 111583663 -106453495 + MIR SINE MIR 6 261 -1 214 216 59 0 chr3 111584590 111584641 -106452517 + (TATATG)n Simple_repeat Simple_repeat 2 55 0 594 342 108 32 chr3 111584724 111585172 -106451986 - L2 LINE L2 -283 3030 2558 234 267 22 33 chr3 111585335 111585425 -106451733 + G-rich Low_complexity Low_complexity 2 90 0 534 265 25 169 chr3 111585558 111586226 -106450932 - L2 LINE L2 -610 2704 2133 252 345 59 8 chr3 111586229 111586348 -106450810 - MIR SINE MIR -64 144 20 2084 177 76 5 chr3 111586718 111587113 -106450045 + MSTB LTR MaLR 1 423 -3 1514 211 56 12 chr3 111587298 111587640 -106449518 - MLT1A1 LTR MaLR 0 365 9 464 346 62 10 chr3 111588391 111588599 -106448559 - MIR SINE MIR -12 250 32 2181 107 0 3 chr3 111589711 111590011 -106447147 + AluSx SINE Alu 1 299 -13 290 313 74 21 chr3 111590741 111590984 -106446174 - L1MC/D LINE L1 -772 5587 5332 21 0 0 0 chr3 111591144 111591165 -106445993 + AT_rich Low_complexity Low_complexity 1 21 0 367 137 27 0 chr3 111592653 111592726 -106444432 + GA-rich Low_complexity Low_complexity 2 76 0 188 67 33 0 chr3 111593976 111594006 -106443152 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1846 168 42 17 chr3 111594377 111594735 -106442423 + L1PA16 LINE L1 5792 6158 -8 194 88 0 29 chr3 111594980 111595014 -106442144 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 21 36 0 0 chr3 111595422 111595450 -106441708 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr3 111595482 111595506 -106441652 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 111595579 111595600 -106441558 + AT_rich Low_complexity Low_complexity 1 21 0 2612 258 58 44 chr3 111596257 111599405 -106437753 - L1 LINE L1 -3303 3803 1017 1184 253 17 10 chr3 111599408 111599705 -106437453 - L1 LINE L1 -6731 299 1 190 327 0 0 chr3 111599805 111599857 -106437301 - MIR3 SINE MIR -22 186 135 401 262 92 43 chr3 111600030 111600194 -106436964 + MIR SINE MIR 91 262 0 22 0 0 0 chr3 111600623 111600645 -106436513 + AT_rich Low_complexity Low_complexity 1 22 0 317 271 17 113 chr3 111600646 111600823 -106436335 - MIR3 SINE MIR -3 205 46 277 115 173 0 chr3 111600931 111600983 -106436175 + pTR5 LTR ERV1 741 801 -1637 3406 138 119 115 chr3 111600984 111602275 -106434883 + pTR5 LTR ERV1 34 691 -23 1325 75 4 6 chr3 111602279 111602518 -106434640 + AluY SINE Alu 1 289 -22 612 327 30 30 chr3 111602609 111602878 -106434280 - L3 LINE CR1 -672 905 637 2211 111 0 0 chr3 111603123 111603430 -106433728 + AluSc SINE Alu 1 307 -2 26 0 0 0 chr3 111603437 111603463 -106433695 + AT_rich Low_complexity Low_complexity 1 26 0 2385 67 0 7 chr3 111605136 111605433 -106431725 - AluY SINE Alu -16 295 1 1937 163 0 7 chr3 111605499 111605800 -106431358 + AluJb SINE Alu 1 299 -13 360 280 48 97 chr3 111606156 111606342 -106430816 + MER5B DNA MER1_type 1 177 -1 3454 189 11 28 chr3 111606605 111607080 -106430078 - L1 LINE L1 -1741 4405 3947 2097 113 3 3 chr3 111607080 111607373 -106429785 - AluY SINE Alu -7 304 12 3454 189 11 28 chr3 111607373 111607677 -106429481 - L1 LINE L1 -2199 3947 3639 * 5057 139 26 52 chr3 111607676 111608730 -106428428 + L1PA16 LINE L1 5144 6166 0 767 87 0 0 chr3 111608904 111609007 -106428151 - AluSg/x SINE Alu -7 305 203 323 301 71 26 chr3 111609172 111609197 -106427961 + L1MC/D LINE L1 4927 4949 -1197 2161 130 0 10 chr3 111609197 111609505 -106427653 + AluSc SINE Alu 1 305 -4 323 301 71 26 chr3 111609505 111609931 -106427227 + L1MC/D LINE L1 4949 5398 -748 375 292 92 25 chr3 111610044 111610328 -106426830 + L1MC/D LINE L1 5521 5823 -1985 300 356 64 0 chr3 111610508 111610696 -106426462 + MIR SINE MIR 49 248 -14 187 422 0 0 chr3 111610749 111610813 -106426345 - L2 LINE L2 -48 3224 3161 23 0 0 0 chr3 111611793 111611816 -106425342 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 111612723 111612744 -106424414 + AT_rich Low_complexity Low_complexity 1 21 0 285 416 7 15 chr3 111613930 111614067 -106423091 + MIR SINE MIR 12 147 -115 243 394 108 12 chr3 111614166 111614407 -106422751 - L2 LINE L2 -205 3067 2804 430 129 35 16 chr3 111614421 111614516 -106422642 + MLT1A1 LTR MaLR 14 110 -264 2128 138 19 26 chr3 111615030 111615408 -106421750 - THE1C LTR MaLR 0 375 1 376 253 33 11 chr3 111616778 111616869 -106420289 + MER5B DNA MER1_type 43 135 -43 185 250 42 0 chr3 111616935 111616983 -106420175 + MER5B DNA MER1_type 128 177 -1 1812 154 19 38 chr3 111617104 111617475 -106419683 + THE1B LTR MaLR 1 364 0 564 219 137 34 chr3 111619234 111619380 -106417778 + MER5A DNA MER1_type 23 183 -6 1087 67 0 0 chr3 111619903 111620038 -106417120 - AluSp/q SINE Alu -13 300 166 478 63 0 0 chr3 111620038 111620101 -106417057 - Alu SINE Alu -248 63 1 2240 89 3 0 chr3 111620654 111620945 -106416213 + AluSg SINE Alu 1 292 -18 219 190 17 86 chr3 111621422 111621480 -106415678 + L2 LINE L2 3219 3272 0 414 278 70 0 chr3 111621629 111621744 -106415414 - L2 LINE L2 -1 3271 3149 501 311 11 73 chr3 111621768 111622028 -106415130 + LTR16A LTR ERVL 23 266 -184 1095 103 0 0 chr3 111622031 111622176 -106414982 - AluSg SINE Alu -108 202 58 240 302 0 0 chr3 111622282 111622345 -106414813 + LTR16A LTR ERVL 382 444 -6 25 75 0 0 chr3 111622536 111622589 -106414569 + AT_rich Low_complexity Low_complexity 1 53 0 33 25 0 0 chr3 111622615 111622655 -106414503 + AT_rich Low_complexity Low_complexity 1 40 0 13154 195 9 10 chr3 111622659 111624612 -106412546 - L1PB1 LINE L1 -15 6136 4184 2056 92 0 57 chr3 111624612 111624926 -106412232 - AluY SINE Alu -15 296 1 13154 195 9 10 chr3 111624926 111625948 -106411210 - L1PB1 LINE L1 -1967 4184 3162 207 0 0 0 chr3 111625948 111625971 -106411187 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 13154 195 9 10 chr3 111625971 111626812 -106410346 - L1PB1 LINE L1 -2989 3162 2322 1036 371 43 24 chr3 111626934 111627762 -106409396 + MERVL LTR ERVL 4139 4982 -503 636 251 6 51 chr3 111628010 111628185 -106408973 - MER63A DNA MER1_type 0 210 44 318 315 0 0 chr3 111628459 111628532 -106408626 + MER63 DNA MER1_type 711 783 -277 2131 125 0 0 chr3 111628543 111628840 -106408318 + AluSx SINE Alu 1 297 -15 965 332 51 16 chr3 111628867 111629295 -106407863 - LTR16A LTR ERVL -2 448 6 795 340 25 35 chr3 111629326 111629723 -106407435 + LTR16A LTR ERVL 52 444 -6 342 304 56 84 chr3 111630017 111630475 -106406683 - MLT1J LTR MaLR -80 535 1 2062 119 13 0 chr3 111631823 111632126 -106405032 - AluSg1 SINE Alu -2 307 1 180 267 22 0 chr3 111632131 111632176 -106404982 + MIR SINE MIR 103 148 -114 2020 122 54 23 chr3 111632639 111632992 -106404166 + THE1B LTR MaLR 1 364 0 21 57 0 0 chr3 111633466 111633501 -106403657 + AT_rich Low_complexity Low_complexity 1 35 0 369 0 0 0 chr3 111633566 111633607 -106403551 + (TA)n Simple_repeat Simple_repeat 2 42 0 894 349 52 12 chr3 111634764 111635171 -106401987 + LTR16A LTR ERVL 16 438 -12 2025 123 23 23 chr3 111635562 111635871 -106401287 + AluSc SINE Alu 1 309 0 22 35 0 0 chr3 111635970 111635999 -106401159 + AT_rich Low_complexity Low_complexity 1 29 0 2101 107 23 7 chr3 111637581 111637881 -106399277 + AluSx SINE Alu 1 305 -7 1178 222 14 21 chr3 111638429 111638717 -106398441 + Charlie1 DNA MER1_type 1439 1724 -1037 1154 245 57 6 chr3 111638793 111639124 -106398034 + Charlie1 DNA MER1_type 1842 2189 -572 622 226 21 48 chr3 111639215 111639401 -106397757 + LTR41 LTR ERVL 1 181 -592 1253 69 0 0 chr3 111639948 111640107 -106397051 - AluY SINE Alu -1 310 152 1584 70 0 0 chr3 111640107 111640306 -106396852 - AluY SINE Alu -112 199 1 182 114 0 57 chr3 111640702 111640737 -106396421 + MIR SINE MIR 204 236 -26 191 35 0 35 chr3 111640738 111640767 -106396391 + (GGGA)n Simple_repeat Simple_repeat 2 29 0 7757 175 23 25 chr3 111640906 111641735 -106395423 - L1PA13 LINE L1 -12 6151 5322 2249 119 3 0 chr3 111641735 111642038 -106395120 - AluSx SINE Alu -8 304 1 7757 175 23 25 chr3 111642038 111643603 -106393555 - L1PA13 LINE L1 -841 5322 3758 242 220 0 0 chr3 111644364 111644414 -106392744 + GA-rich Low_complexity Low_complexity 1 50 0 2559 94 16 11 chr3 111644675 111645048 -106392110 - THE1C LTR MaLR 0 375 1 22 0 0 0 chr3 111645405 111645427 -106391731 + AT_rich Low_complexity Low_complexity 1 22 0 1845 143 3 14 chr3 111645503 111645815 -106391343 + AluSx SINE Alu 1 309 0 195 42 0 0 chr3 111646812 111646836 -106390322 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 766 195 75 136 chr3 111649182 111649608 -106387550 + L1MC3 LINE L1 5674 6073 -1712 454 247 6 69 chr3 111649615 111649789 -106387369 - MER66B LTR ERV1 -4 482 320 650 122 10 0 chr3 111649791 111649889 -106387269 - MER66B LTR ERV1 -382 104 6 3533 207 19 18 chr3 111649894 111650351 -106386807 + L1MC3 LINE L1 6073 6533 -1252 2141 131 0 0 chr3 111650351 111650648 -106386510 + AluSx SINE Alu 1 297 -15 3533 207 19 18 chr3 111650648 111650979 -106386179 + L1MC3 LINE L1 6533 6862 -923 383 160 13 0 chr3 111650984 111651059 -106386099 + GA-rich Low_complexity Low_complexity 4 79 0 380 239 21 0 chr3 111651065 111651182 -106385976 + L1MD3 LINE L1 6181 6335 -1486 601 164 49 0 chr3 111651216 111651338 -106385820 + L1MC3 LINE L1 6879 7006 -779 1807 230 68 123 chr3 111651458 111652611 -106384547 - MER52A LTR ERV1 0 1755 666 31 0 0 0 chr3 111653103 111653134 -106384024 + AT_rich Low_complexity Low_complexity 1 31 0 27 0 0 0 chr3 111654435 111654462 -106382696 + AT_rich Low_complexity Low_complexity 1 27 0 326 342 67 27 chr3 111654536 111654685 -106382473 - MIR SINE MIR -106 156 2 22 35 0 0 chr3 111654810 111654839 -106382319 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr3 111655317 111655340 -106381818 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 111657147 111657168 -106379990 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr3 111658239 111658266 -106378892 + AT_rich Low_complexity Low_complexity 1 27 0 304 243 48 58 chr3 111658335 111658438 -106378720 + MER81 DNA DNA 6 107 -7 480 72 0 0 chr3 111658439 111658508 -106378650 + (TG)n Simple_repeat Simple_repeat 2 70 0 232 175 25 0 chr3 111658870 111658887 -106378271 + (TA)n Simple_repeat Simple_repeat 2 17 -66 186 43 0 0 chr3 111658887 111658910 -106378248 + (TC)n Simple_repeat Simple_repeat 2 24 0 232 175 25 0 chr3 111658910 111658972 -106378186 + (TA)n Simple_repeat Simple_repeat 17 83 0 1595 277 40 75 chr3 111658988 111659972 -106377186 - L1ME3A LINE L1 -9 6441 5495 819 297 102 41 chr3 111660024 111660922 -106376236 - L1ME3A LINE L1 -1017 5409 4457 905 262 125 7 chr3 111661049 111661457 -106375701 - L1M4 LINE L1 -1058 5088 4633 770 284 65 4 chr3 111661479 111661953 -106375205 - L1ME3A LINE L1 -1962 4464 3942 15328 165 19 13 chr3 111661971 111668251 -106368907 - L1MA2 LINE L1 0 7723 1406 1470 278 55 2 chr3 111668245 111668831 -106368327 - L1ME3A LINE L1 -2462 3964 3348 * 310 232 21 0 chr3 111668839 111668934 -106368224 - L1MB3 LINE L1 0 6183 6087 3384 152 22 16 chr3 111668938 111669568 -106367590 - L1MA4 LINE L1 -300 6000 5367 893 248 63 109 chr3 111669566 111670591 -106366567 - L1MDa LINE L1 -3085 3341 2369 * 1114 279 52 29 chr3 111670598 111671082 -106366076 - L1MDa LINE L1 -5296 1120 626 28 48 0 0 chr3 111671372 111671414 -106365744 + AT_rich Low_complexity Low_complexity 1 42 0 536 248 45 15 chr3 111671512 111671645 -106365513 - MER45C DNA AcHobo -107 846 710 257 367 13 0 chr3 111671658 111671737 -106365421 - MER45C DNA AcHobo -560 393 314 482 224 11 126 chr3 111671833 111672007 -106365151 - MER45 DNA AcHobo -797 156 1 312 323 44 12 chr3 111672007 111672172 -106364986 - L1MDa LINE L1 -4526 1900 1749 * 338 324 17 28 chr3 111672157 111672333 -106364825 - L1MDa LINE L1 -5891 525 352 24 32 0 0 chr3 111673167 111673198 -106363960 + AT_rich Low_complexity Low_complexity 1 31 0 28 0 0 0 chr3 111673335 111673363 -106363795 + AT_rich Low_complexity Low_complexity 1 28 0 1998 150 0 0 chr3 111674024 111674330 -106362828 - AluSq SINE Alu -7 306 1 4904 222 58 27 chr3 111674348 111676321 -106360837 + L1MC4 LINE L1 3960 5687 -491 1625 197 6 0 chr3 111676041 111676356 -106360802 + L1MB7 LINE L1 5778 6094 -90 * 740 61 0 0 chr3 111676372 111676471 -106360687 - AluY SINE Alu -7 304 206 384 130 13 13 chr3 111676472 111676541 -106360617 + L1MB7 LINE L1 6103 6174 -10 2309 97 0 0 chr3 111676541 111676839 -106360319 - AluSg SINE Alu -12 298 1 672 322 57 30 chr3 111678484 111678885 -106358273 + L2 LINE L2 2492 2903 -411 2506 262 50 36 chr3 111678898 111678937 -106358221 - L1ME1 LINE L1 -5 6161 6124 1665 160 45 11 chr3 111678937 111679224 -106357934 - AluJb SINE Alu -15 297 1 2506 262 50 36 chr3 111679224 111680184 -106356974 - L1ME1 LINE L1 -42 6124 5143 350 289 96 10 chr3 111680223 111680327 -106356831 + L2 LINE L2 2942 3054 -259 609 287 93 43 chr3 111680382 111680682 -106356476 + MLT1I LTR MaLR 71 385 -24 325 314 69 0 chr3 111680784 111680886 -106356272 + L2 LINE L2 3200 3308 -5 324 307 58 86 chr3 111681463 111681893 -106355265 + L2 LINE L2 2895 3312 -1 261 97 0 111 chr3 111683030 111683102 -106354056 - L1MC4 LINE L1 -1339 6703 6640 694 188 34 0 chr3 111683108 111683225 -106353933 - FLAM_C SINE Alu -12 121 1 672 278 46 16 chr3 111686351 111686657 -106350501 + Tigger8 DNA MER2_type 243 557 -109 2390 77 0 0 chr3 111686945 111687243 -106349915 - AluY SINE Alu -11 300 3 233 281 18 0 chr3 111687352 111687409 -106349749 - MIR3 SINE MIR -12 196 139 22 35 0 0 chr3 111689077 111689106 -106348052 + AT_rich Low_complexity Low_complexity 1 29 0 255 148 49 25 chr3 111690127 111690208 -106346950 + (TAA)n Simple_repeat Simple_repeat 2 84 0 366 23 0 0 chr3 111690723 111690766 -106346392 + (TG)n Simple_repeat Simple_repeat 2 44 0 378 426 63 29 chr3 111690766 111691256 -106345902 + L1PB4 LINE L1 10 516 -6333 6992 249 70 21 chr3 111691823 111692198 -106344960 + L1PB4 LINE L1 1049 1404 -5444 2465 65 3 0 chr3 111692198 111692506 -106344652 + AluY SINE Alu 1 309 -2 6992 249 70 21 chr3 111692506 111694376 -106342782 + L1PB4 LINE L1 1404 3639 -3209 2039 128 29 52 chr3 111694376 111694760 -106342398 + THE1C LTR MaLR 1 375 0 6992 249 70 21 chr3 111694760 111696135 -106341023 + L1PB4 LINE L1 3639 4945 -1903 4382 167 29 40 chr3 111696129 111696499 -106340659 + L1PB4 LINE L1 5803 6176 -682 * 210 37 0 0 chr3 111696499 111696526 -106340632 + (TAAAA)n Simple_repeat Simple_repeat 1 27 0 4382 167 29 40 chr3 111696526 111697006 -106340152 + L1PB4 LINE L1 6176 6643 -215 2023 119 61 0 chr3 111697006 111697301 -106339857 + AluSp SINE Alu 1 313 0 4382 167 29 40 chr3 111697301 111697501 -106339657 + L1PB4 LINE L1 6643 6844 -14 1508 237 58 38 chr3 111697814 111698262 -106338896 - MLT1C LTR MaLR 0 467 11 29 84 0 0 chr3 111698406 111698477 -106338681 + AT_rich Low_complexity Low_complexity 1 71 0 226 239 56 0 chr3 111698523 111698594 -106338564 - L1ME4a LINE L1 -36 6085 6011 23 54 0 0 chr3 111698699 111698736 -106338422 + AT_rich Low_complexity Low_complexity 1 37 0 27 29 0 0 chr3 111699741 111699775 -106337383 + AT_rich Low_complexity Low_complexity 1 34 0 200 316 105 30 chr3 111699816 111699949 -106337209 - L2 LINE L2 -9 3304 3162 2488 74 0 0 chr3 111699951 111700262 -106336896 + AluY SINE Alu 1 311 0 192 298 91 50 chr3 111700360 111700481 -106336677 + L2 LINE L2 2249 2374 -940 29 28 0 0 chr3 111700504 111700540 -106336618 + AT_rich Low_complexity Low_complexity 1 36 0 187 388 69 9 chr3 111701332 111701448 -106335710 - MIR SINE MIR -57 151 29 22 0 0 0 chr3 111701684 111701706 -106335452 + AT_rich Low_complexity Low_complexity 1 22 0 1001 299 82 21 chr3 111701768 111702192 -106334966 - LTR16A LTR ERVL 0 450 1 392 316 68 0 chr3 111702220 111702353 -106334805 + MIR SINE MIR 31 172 -90 5693 192 20 6 chr3 111702389 111704083 -106333075 + L1PA16 LINE L1 4016 5736 -430 562 115 42 21 chr3 111704083 111704179 -106332979 + MER4A LTR ERV1 1 98 -566 1581 132 8 77 chr3 111704179 111704550 -106332608 + MER4A LTR ERV1 261 664 0 2308 153 63 0 chr3 111704551 111704950 -106332208 + L1PA16 LINE L1 5734 6157 -9 275 246 8 0 chr3 111705163 111705289 -106331869 + (TA)n Simple_repeat Simple_repeat 1 127 0 196 274 39 0 chr3 111705476 111705527 -106331631 + MIR SINE MIR 210 262 0 224 390 163 0 chr3 111705541 111705664 -106331494 + L2 LINE L2 3129 3271 -1 22 56 0 0 chr3 111706353 111706389 -106330769 + AT_rich Low_complexity Low_complexity 1 36 0 193 274 189 0 chr3 111706988 111707083 -106330075 - MIR SINE MIR -63 199 87 348 213 125 44 chr3 111707290 111707426 -106329732 + L1MEc LINE L1 216 362 -6034 379 327 108 22 chr3 111707707 111707930 -106329228 - MIR SINE MIR -17 245 4 2249 88 0 3 chr3 111708131 111708426 -106328732 - AluSc SINE Alu -15 294 1 220 346 75 25 chr3 111710182 111710341 -106326817 - MIR SINE MIR -95 167 1 1108 201 164 28 chr3 111710520 111710838 -106326320 + MLT1A1 LTR MaLR 1 361 -4 22 0 0 0 chr3 111711942 111711964 -106325194 + AT_rich Low_complexity Low_complexity 1 22 0 1069 142 96 5 chr3 111712233 111712452 -106324706 + L1MC1 LINE L1 6095 6333 0 489 333 24 0 chr3 111712841 111713009 -106324149 - MIR SINE MIR -15 247 76 2004 109 13 20 chr3 111714184 111714487 -106322671 + AluSx SINE Alu 1 301 -11 267 192 0 14 chr3 111715640 111715664 -106321494 + (TAA)n Simple_repeat Simple_repeat 1 24 -48 2472 60 0 0 chr3 111715664 111715962 -106321196 - AluY SINE Alu -13 298 1 267 192 0 14 chr3 111715962 111716010 -106321148 + (TAA)n Simple_repeat Simple_repeat 24 72 0 728 303 63 38 chr3 111716134 111716659 -106320499 + ERVL LTR ERVL 3841 4435 -628 2068 168 11 22 chr3 111716708 111717077 -106320081 + MLT1A1 LTR MaLR 1 365 0 6791 207 66 55 chr3 111717104 111718806 -106318352 + MLT1A1-int LTR MaLR 16 1735 0 1768 206 22 11 chr3 111718806 111719161 -106317997 + MLT1A1 LTR MaLR 1 359 -6 522 344 43 26 chr3 111719164 111719585 -106317573 + ERVL LTR ERVL 4779 5206 -558 424 310 94 33 chr3 111719952 111720165 -106316993 + LTR16A LTR ERVL 210 435 -15 1756 229 42 29 chr3 111720211 111720666 -106316492 - MLT1C LTR MaLR -1 466 6 1094 236 155 33 chr3 111720675 111721282 -106315876 + L1ME2 LINE L1 3868 4548 -1598 2356 70 0 0 chr3 111721282 111721582 -106315576 + AluY SINE Alu 1 300 -11 321 255 11 0 chr3 111721614 111721708 -106315450 + L1ME2 LINE L1 4533 4627 -1519 2109 172 40 136 chr3 111721752 111722288 -106314870 - MLT2B3 LTR ERVL 0 554 81 1853 159 7 3 chr3 111722288 111722577 -106314581 - AluSx SINE Alu -19 293 4 2109 172 40 136 chr3 111722577 111722645 -106314513 - MLT2B3 LTR ERVL -473 81 8 285 257 50 56 chr3 111722759 111722938 -106314220 + L1ME2 LINE L1 4859 5036 -1110 670 240 102 39 chr3 111722982 111723530 -106313628 + L1ME2 LINE L1 5135 5720 -444 240 140 100 0 chr3 111723606 111723656 -106313502 + L1M4 LINE L1 4873 4927 -1219 1092 242 38 50 chr3 111723732 111724128 -106313030 + L1ME2 LINE L1 5754 6144 -20 2605 216 71 30 chr3 111724159 111724991 -106312167 + MER69 DNA AcHobo 1661 2526 0 2595 168 43 8 chr3 111725259 111725729 -106311429 + MER66B LTR ERV1 1 486 0 347 257 21 49 chr3 111726211 111726355 -106310803 + L1ME4a LINE L1 5888 6027 -94 2097 110 13 13 chr3 111726472 111726780 -106310378 + AluSg SINE Alu 3 310 0 323 254 127 0 chr3 111726780 111726898 -106310260 + L1ME4a LINE L1 5831 5963 -158 21 36 0 0 chr3 111726912 111726940 -106310218 + AT_rich Low_complexity Low_complexity 1 28 0 291 221 76 44 chr3 111726956 111727114 -106310044 + L1ME4a LINE L1 5959 6121 0 208 239 0 0 chr3 111727549 111727595 -106309563 + (CA)n Simple_repeat Simple_repeat 2 47 0 2279 182 58 2 chr3 111728761 111729170 -106307988 - LOR1b LTR ERV1 0 461 25 192 40 0 0 chr3 111729170 111729195 -106307963 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2279 182 58 2 chr3 111729195 111729219 -106307939 - LOR1b LTR ERV1 -436 25 4 4166 159 11 7 chr3 111729517 111730127 -106307031 - MER50 LTR ERV1 -25 709 94 2101 142 0 3 chr3 111730127 111730438 -106306720 + AluSx SINE Alu 1 310 -2 4166 159 11 7 chr3 111730438 111730533 -106306625 - MER50 LTR ERV1 -640 94 1 466 216 43 74 chr3 111731864 111732107 -106305051 - MER41B LTR ERV1 -205 430 55 1045 320 142 57 chr3 111732227 111732505 -106304653 - L2 LINE L2 -649 2665 2412 2135 103 3 33 chr3 111732505 111732806 -106304352 + AluSc SINE Alu 1 292 -17 1045 320 142 57 chr3 111732806 111733641 -106303517 - L2 LINE L2 -902 2412 1457 960 229 89 3 chr3 111733733 111734026 -106303132 - MER45B DNA AcHobo -12 1028 711 1377 272 84 89 chr3 111734132 111734896 -106302262 - MER45C DNA AcHobo -174 779 1 1512 229 64 38 chr3 111734984 111735408 -106301750 + LTR40b LTR ERVL 4 438 -24 324 226 44 25 chr3 111735711 111735870 -106301288 - Charlie7 DNA MER1_type -11 2601 2440 1899 184 37 8 chr3 111736094 111736447 -106300711 + MLT1A1 LTR MaLR 1 363 -2 2430 83 0 0 chr3 111737062 111737363 -106299795 + AluY SINE Alu 1 301 -10 292 237 26 9 chr3 111738386 111738500 -106298658 + (TA)n Simple_repeat Simple_repeat 1 116 0 477 0 0 0 chr3 111740092 111740145 -106297013 + (TA)n Simple_repeat Simple_repeat 2 54 0 257 231 0 0 chr3 111740368 111740420 -106296738 + LTR30 LTR ERV1 1 52 -670 531 113 15 0 chr3 111740420 111740526 -106296632 + LTR12 LTR ERV1 53 274 -440 399 245 10 0 chr3 111740526 111740628 -106296530 + LTR30 LTR ERV1 541 643 -79 1366 124 15 0 chr3 111740628 111740829 -106296329 + LTR12 LTR ERV1 377 580 -134 2147 97 0 0 chr3 111740829 111741107 -106296051 + AluY SINE Alu 27 304 -7 194 91 30 0 chr3 111741174 111741207 -106295951 + CT-rich Low_complexity Low_complexity 1 34 0 364 311 111 20 chr3 111741365 111741692 -106295466 + L1MC4a LINE L1 5555 5781 -340 192 179 0 0 chr3 111741875 111741914 -106295244 + (TA)n Simple_repeat Simple_repeat 2 40 0 924 271 44 30 chr3 111742428 111742793 -106294365 + L1MCc LINE L1 70 439 -5984 947 164 55 55 chr3 111743335 111743554 -106293604 - MER20 DNA MER1_type 0 219 1 330 123 0 0 chr3 111743566 111743623 -106293535 + (TAGA)n Simple_repeat Simple_repeat 3 59 0 314 193 52 111 chr3 111744082 111744217 -106292941 + L2 LINE L2 3186 3312 -1 2001 113 35 0 chr3 111744442 111744726 -106292432 - AluSg SINE Alu -16 294 1 290 297 40 0 chr3 111745683 111745784 -106291374 + MIR SINE MIR 135 239 -23 * 1767 335 173 32 chr3 111745781 111747280 -106289878 + L2 LINE L2 1555 3268 -45 770 306 117 61 chr3 111747345 111747708 -106289450 + L1ME3A LINE L1 4084 4425 -1721 1516 194 41 17 chr3 111747708 111748002 -106289156 + AluJb SINE Alu 3 303 -9 770 306 117 61 chr3 111748002 111748823 -106288335 + L1ME3A LINE L1 4425 5362 -784 1674 193 0 23 chr3 111748937 111749238 -106287920 - AluJo SINE Alu -17 295 2 720 292 40 0 chr3 111749264 111749490 -106287668 - MIR SINE MIR -25 237 3 284 358 64 34 chr3 111749505 111749853 -106287305 + L1ME3A LINE L1 5483 5850 -320 1605 231 34 71 chr3 111749853 111750391 -106286767 + MLT2B1 LTR ERVL 1 518 -2 284 358 64 34 chr3 111750391 111750508 -106286650 + L1ME3A LINE L1 5850 5962 -208 27 0 0 0 chr3 111750811 111750838 -106286320 + AT_rich Low_complexity Low_complexity 1 27 0 1824 146 165 5 chr3 111751069 111751438 -106285720 + MSTA LTR MaLR 1 428 0 2347 80 17 0 chr3 111752098 111752400 -106284758 + AluSc SINE Alu 1 307 -2 24 0 0 0 chr3 111753088 111753112 -106284046 + AT_rich Low_complexity Low_complexity 1 24 0 1937 108 4 0 chr3 111753122 111753382 -106283776 + AluSg SINE Alu 39 299 -11 2460 78 0 0 chr3 111753724 111754033 -106283125 + AluSc SINE Alu 1 309 0 246 62 0 0 chr3 111754076 111754108 -106283050 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 275 358 124 16 chr3 111754115 111754422 -106282736 + L2 LINE L2 2471 2810 -504 248 216 20 20 chr3 111754624 111754675 -106282483 + L2 LINE L2 3190 3240 -32 3484 156 38 3 chr3 111754861 111755491 -106281667 + L1MA6 LINE L1 5633 6284 -16 203 61 30 0 chr3 111757525 111757558 -106279600 + (CA)n Simple_repeat Simple_repeat 2 35 0 470 238 22 43 chr3 111759160 111759345 -106277813 + L1MCc LINE L1 21 201 -6222 508 275 53 12 chr3 111759362 111759533 -106277625 + L1MCc LINE L1 260 437 -5986 427 284 80 28 chr3 111759851 111760101 -106277057 + L1MCc LINE L1 1047 1309 -5114 10199 186 43 12 chr3 111760107 111765242 -106271916 + L1MA2 LINE L1 19 7723 0 208 150 62 0 chr3 111765333 111765413 -106271745 + (TA)n Simple_repeat Simple_repeat 2 86 0 494 309 46 73 chr3 111765424 111765751 -106271407 + L1MCc LINE L1 1393 1710 -5231 1348 278 106 39 chr3 111765760 111766034 -106271124 + L1MCc LINE L1 1815 2069 -4872 243 0 0 0 chr3 111766034 111766061 -106271097 + (TC)n Simple_repeat Simple_repeat 1 27 0 * 333 0 0 0 chr3 111766060 111766097 -106271061 + (CA)n Simple_repeat Simple_repeat 1 37 0 1348 278 106 39 chr3 111766061 111766302 -106270856 + L1MCc LINE L1 2069 2293 -4648 2150 109 0 26 chr3 111766302 111766604 -106270554 - AluSx SINE Alu -18 294 1 1348 278 106 39 chr3 111766604 111767662 -106269496 + L1MCc LINE L1 2293 3421 -3520 1738 274 83 32 chr3 111767699 111769167 -106267991 + L1ME1 LINE L1 2100 3599 -2616 1672 249 82 22 chr3 111769192 111769859 -106267299 + L1ME1 LINE L1 4129 4835 -1380 1076 248 31 0 chr3 111769861 111770119 -106267039 + AluJo SINE Alu 43 308 -4 1258 249 76 46 chr3 111770120 111770543 -106266615 + L1ME1 LINE L1 4821 5230 -1003 930 202 239 21 chr3 111770543 111770786 -106266372 - AluJo SINE Alu -6 296 1 1258 249 76 46 chr3 111770786 111771306 -106265852 + L1ME1 LINE L1 5230 5775 -458 1013 240 32 70 chr3 111771308 111771693 -106265465 - MLT1A2 LTR MaLR 0 467 4 2787 276 45 63 chr3 111771703 111772991 -106264167 - MLT1A2-int LTR MaLR -8 1363 99 1553 181 60 30 chr3 111772991 111773355 -106263803 - THE1C LTR MaLR 0 375 1 8711 184 18 10 chr3 111773355 111774993 -106262165 - THE1C-int LTR MaLR 0 1651 1 1412 199 62 33 chr3 111774994 111775331 -106261827 - THE1C LTR MaLR -1 374 28 430 122 19 5 chr3 111775332 111775418 -106261740 - MLT1A2-int LTR MaLR -1270 101 15 1144 265 36 10 chr3 111775418 111775810 -106261348 + L1ME1 LINE L1 5769 6170 -65 216 233 14 41 chr3 111775837 111775910 -106261248 + GA-rich Low_complexity Low_complexity 2 72 0 460 175 41 31 chr3 111776096 111776193 -106260965 + MLT1G LTR MaLR 181 278 -312 373 258 70 31 chr3 111776285 111776413 -106260745 + MLT1G LTR MaLR 463 595 0 2131 154 22 0 chr3 111776588 111776944 -106260214 - THE1B LTR MaLR 0 364 1 203 325 100 85 chr3 111777810 111778151 -106259007 - L2 LINE L2 -100 3172 2827 218 230 241 23 chr3 111778750 111778837 -106258321 + MIR SINE MIR 15 120 -142 654 84 28 0 chr3 111778855 111778962 -106258196 + (TTTC)n Simple_repeat Simple_repeat 4 113 0 2199 84 3 38 chr3 111778975 111779295 -106257863 - AluSc SINE Alu 0 309 1 417 232 64 40 chr3 111779295 111779410 -106257748 + MIR SINE MIR 116 236 -26 518 308 51 34 chr3 111782109 111782343 -106254815 - MIR SINE MIR -10 252 15 517 315 40 15 chr3 111782491 111782691 -106254467 + MLT1G1 LTR MaLR 3 207 -388 218 347 32 32 chr3 111782907 111783031 -106254127 - MIR SINE MIR -121 141 18 2082 149 130 0 chr3 111783038 111783414 -106253744 + MSTB LTR MaLR 2 426 0 213 65 0 0 chr3 111783461 111783492 -106253666 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 1531 83 46 0 chr3 111784418 111784658 -106252500 + L1MA1 LINE L1 6048 6298 -4 21 36 0 0 chr3 111784658 111784686 -106252472 + AT_rich Low_complexity Low_complexity 1 28 0 4374 147 7 51 chr3 111785986 111786835 -106250323 - L1PA12 LINE L1 -816 5330 4519 * 5766 110 8 4 chr3 111786832 111787669 -106249489 + L1PA12 LINE L1 5326 6166 -2 489 327 112 0 chr3 111789513 111789736 -106247422 - MIR SINE MIR -11 251 4 965 176 11 6 chr3 111790167 111790343 -106246815 + MER45A DNA AcHobo 2 178 0 1232 277 50 95 chr3 111791838 111792459 -106244699 + MLT1E LTR MaLR 1 593 0 2212 143 8 27 chr3 111792459 111792830 -106244328 + THE1B LTR MaLR 1 364 0 937 237 86 43 chr3 111793429 111793853 -106243305 + MLT1B LTR MaLR 3 390 0 387 256 28 91 chr3 111793943 111794119 -106243039 - MER5A DNA MER1_type -24 165 1 27 0 0 0 chr3 111795963 111795990 -106241168 + AT_rich Low_complexity Low_complexity 1 27 0 269 322 25 8 chr3 111796113 111796234 -106240924 + MER103 DNA DNA 38 160 -6 333 282 75 69 chr3 111796378 111796552 -106240606 + MIR SINE MIR 1 175 -87 2122 99 20 3 chr3 111796590 111796883 -106240275 + AluSg SINE Alu 1 298 -12 37 23 0 0 chr3 111797258 111797302 -106239856 + AT_rich Low_complexity Low_complexity 1 44 0 2264 218 150 33 chr3 111797956 111799205 -106237953 + MER45R DNA AcHobo 2 1448 -133 207 280 130 30 chr3 111800300 111800400 -106236758 + MIR3 SINE MIR 93 202 -6 384 121 15 0 chr3 111800884 111800950 -106236208 + L1MC3 LINE L1 6864 6930 -855 2426 63 0 3 chr3 111801099 111801398 -106235760 + AluY SINE Alu 1 298 -13 21 0 0 0 chr3 111801460 111801481 -106235677 + AT_rich Low_complexity Low_complexity 1 21 0 183 129 0 0 chr3 111801600 111801631 -106235527 + (TTTTC)n Simple_repeat Simple_repeat 3 33 0 975 244 5 9 chr3 111801651 111801872 -106235286 - AluJo SINE Alu -92 220 1 4037 148 43 7 chr3 111802846 111803507 -106233651 - L1PA16 LINE L1 0 6166 5475 369 0 0 0 chr3 111803507 111803548 -106233610 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 4037 148 43 7 chr3 111803548 111803608 -106233550 - L1PA16 LINE L1 -691 5475 5419 23 101 0 0 chr3 111803727 111803806 -106233352 + AT_rich Low_complexity Low_complexity 1 79 0 329 382 7 0 chr3 111804241 111804385 -106232773 - ERVL LTR ERVL -1482 4282 4138 6066 99 5 16 chr3 111805354 111806104 -106231054 - L1PA10 LINE L1 -16 6152 5396 2082 100 7 4 chr3 111806104 111806385 -106230773 - AluY SINE Alu -16 295 14 6066 99 5 16 chr3 111806385 111806574 -106230584 - L1PA10 LINE L1 -772 5396 5206 390 238 10 30 chr3 111806690 111806791 -106230367 + MER45C DNA AcHobo 850 948 -5 280 356 68 8 chr3 111806837 111806955 -106230203 + MIR SINE MIR 23 147 -115 486 284 74 57 chr3 111808015 111808610 -106228548 + HAL1 LINE L1 875 1479 -1028 462 313 103 35 chr3 111808635 111809002 -106228156 + HAL1 LINE L1 1615 2006 -501 292 278 53 43 chr3 111809174 111809383 -106227775 + HAL1 LINE L1 2269 2479 -28 574 89 0 0 chr3 111809444 111809523 -106227635 - MADE1 DNA Mariner 0 80 2 31 44 0 0 chr3 111809527 111809572 -106227586 + AT_rich Low_complexity Low_complexity 1 45 0 362 288 181 6 chr3 111809835 111809995 -106227163 - MER5A DNA MER1_type -1 188 1 246 196 217 11 chr3 111810086 111810178 -106226980 + MER103 DNA DNA 12 122 -44 274 170 0 38 chr3 111810780 111810833 -106226325 - MER5A DNA MER1_type -22 167 117 269 293 72 54 chr3 111810936 111811017 -106226141 + L1MC4 LINE L1 7816 7894 -148 237 65 0 0 chr3 111811017 111811048 -106226110 + (TG)n Simple_repeat Simple_repeat 1 31 0 269 293 72 54 chr3 111811048 111811188 -106225970 + L1MC4 LINE L1 7894 8041 -1 638 283 5 27 chr3 111811266 111811453 -106225705 + L2 LINE L2 3104 3286 -27 2594 104 3 6 chr3 111811501 111811865 -106225293 - THE1B LTR MaLR -1 363 1 1724 52 0 0 chr3 111811865 111812075 -106225083 - THE1B-int LTR MaLR 0 1580 1371 3431 61 5 0 chr3 111812191 111812634 -106224524 + L1PA7 LINE L1 5708 6152 -2 5387 133 1 29 chr3 111812981 111813399 -106223759 + L1P LINE L1 3551 3979 -2167 2176 85 4 0 chr3 111813399 111813707 -106223451 + AluY SINE Alu 1 309 0 5387 133 1 29 chr3 111813707 111814196 -106222962 + L1P LINE L1 3979 4434 -1712 1962 193 41 24 chr3 111814196 111814738 -106222420 - MLT2A2 LTR ERVL 0 554 1 3594 136 3 34 chr3 111814738 111815364 -106221794 + L1P LINE L1 4430 5036 -1110 2074 80 11 0 chr3 111815474 111815749 -106221409 - AluSg SINE Alu -8 302 25 541 260 156 7 chr3 111816037 111816191 -106220967 - MER5A DNA MER1_type -1 188 12 5504 140 53 82 chr3 111816287 111817554 -106219604 + Tigger3b DNA MER2_type 2 1231 0 2087 103 0 35 chr3 111817986 111818305 -106218853 + AluSg1 SINE Alu 1 308 -1 23 0 0 0 chr3 111818433 111818456 -106218702 + AT_rich Low_complexity Low_complexity 1 23 0 823 287 0 18 chr3 111818514 111818737 -106218421 - MIR SINE MIR -12 250 32 726 256 50 0 chr3 111818786 111818966 -106218192 + MER5A DNA MER1_type 1 189 0 1973 234 26 24 chr3 111819381 111819872 -106217286 - LTR40a LTR ERVL -24 495 4 21 0 0 0 chr3 111820133 111820154 -106217004 + AT_rich Low_complexity Low_complexity 1 21 0 215 149 0 21 chr3 111820744 111820791 -106216367 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 22 35 0 0 chr3 111821282 111821311 -106215847 + AT_rich Low_complexity Low_complexity 1 29 0 1107 264 49 58 chr3 111821508 111822062 -106215096 - MLT1H LTR MaLR 0 549 1 11138 236 66 34 chr3 111822441 111825940 -106211218 - L1P LINE L1 -783 5363 1752 32 26 0 0 chr3 111826217 111826256 -106210902 + AT_rich Low_complexity Low_complexity 1 39 0 232 311 115 20 chr3 111826613 111826761 -106210397 - MIR SINE MIR -13 249 88 201 259 0 0 chr3 111827127 111827185 -106209973 + (TA)n Simple_repeat Simple_repeat 1 58 0 225 105 0 0 chr3 111828494 111828532 -106208626 - Alu SINE Alu -3 296 259 1100 113 0 0 chr3 111828534 111828685 -106208473 - AluSg SINE Alu -159 151 1 2162 126 19 0 chr3 111829091 111829401 -106207757 + HUERS-P3 LTR ERV1 6506 6821 -597 1628 123 48 0 chr3 111829400 111829651 -106207507 + HUERS-P3 LTR ERV1 8650 8912 -7 * 2503 124 39 12 chr3 111829657 111830166 -106206992 + LTR9B LTR ERV1 1 560 -84 209 56 0 28 chr3 111830167 111830203 -106206955 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 306 313 0 0 chr3 111830756 111830839 -106206319 - L2 LINE L2 -5 3267 3185 651 292 32 19 chr3 111831076 111831292 -106205866 - L2 LINE L2 -417 2897 2679 199 356 115 19 chr3 111831387 111831491 -106205667 - L2 LINE L2 -25 3247 3134 1611 98 23 12 chr3 111831731 111831987 -106205171 - L1MA8 LINE L1 0 6291 6033 499 349 139 29 chr3 111831989 111832585 -106204573 - L2 LINE L2 -602 2712 2051 1317 269 31 33 chr3 111832636 111833089 -106204069 - LTR40c LTR ERVL -7 458 7 411 308 27 7 chr3 111833096 111833242 -106203916 - L2 LINE L2 -1345 1969 1821 2058 110 17 3 chr3 111833242 111833543 -106203615 + AluSq SINE Alu 1 305 -8 240 111 0 0 chr3 111833553 111833589 -106203569 + (A)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr3 111833640 111833661 -106203497 + AT_rich Low_complexity Low_complexity 1 21 0 1594 177 143 31 chr3 111833843 111834262 -106202896 + MLT1C LTR MaLR 1 466 -1 2148 109 7 3 chr3 111834381 111834674 -106202484 - AluSx SINE Alu -18 294 1 21 71 0 0 chr3 111836727 111836769 -106200389 + AT_rich Low_complexity Low_complexity 1 42 0 2533 97 21 21 chr3 111836838 111837211 -106199947 - THE1C LTR MaLR -2 373 1 23 68 0 0 chr3 111837222 111837266 -106199892 + AT_rich Low_complexity Low_complexity 1 44 0 468 283 114 12 chr3 111838011 111838177 -106198981 - MARNA DNA Mariner -88 498 316 232 299 254 15 chr3 111838304 111838438 -106198720 - MER5B DNA MER1_type -6 172 7 259 258 43 32 chr3 111840022 111840115 -106197043 + MER21B LTR ERV1 3 96 -767 392 240 13 0 chr3 111840121 111840196 -106196962 + MER21B LTR ERV1 19 94 -769 * 2102 197 35 11 chr3 111840194 111840794 -106196364 + MER21B LTR ERV1 43 756 -107 23 0 0 0 chr3 111841061 111841084 -106196074 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr3 111841288 111841320 -106195838 + AT_rich Low_complexity Low_complexity 1 32 0 221 128 21 0 chr3 111842074 111842121 -106195037 + (TG)n Simple_repeat Simple_repeat 2 49 0 1316 116 5 0 chr3 111842264 111842454 -106194704 - THE1A LTR MaLR 0 355 165 2463 81 44 12 chr3 111842486 111842830 -106194328 - THE1A LTR MaLR 0 355 1 11054 98 16 12 chr3 111842830 111843136 -106194022 - THE1A-int LTR MaLR 0 1580 1277 2338 82 0 3 chr3 111843136 111843430 -106193728 - AluY SINE Alu -18 293 1 11054 98 16 12 chr3 111843430 111844697 -106192461 - THE1A-int LTR MaLR -303 1277 1 2326 77 65 9 chr3 111844697 111845033 -106192125 - THE1A LTR MaLR 0 355 1 272 295 77 39 chr3 111845921 111846077 -106191081 - MIR SINE MIR -54 208 47 396 0 0 0 chr3 111846127 111846171 -106190987 + (TG)n Simple_repeat Simple_repeat 1 44 0 216 0 0 0 chr3 111846202 111846226 -106190932 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 340 235 59 0 chr3 111846666 111846751 -106190407 - MER117 DNA MER1_type -101 96 7 248 167 205 13 chr3 111848485 111848563 -106188595 - MIR SINE MIR -20 242 150 326 302 13 13 chr3 111848666 111848825 -106188333 + (CATATA)n Simple_repeat Simple_repeat 6 164 0 595 251 66 27 chr3 111848827 111849010 -106188148 - MIR SINE MIR -69 193 4 33 43 0 0 chr3 111849258 111849305 -106187853 + AT_rich Low_complexity Low_complexity 1 47 0 26 0 0 0 chr3 111849614 111849640 -106187518 + AT_rich Low_complexity Low_complexity 1 26 0 725 151 25 19 chr3 111849640 111849799 -106187359 - L1MA5A LINE L1 0 6297 6138 41 0 0 0 chr3 111850322 111850363 -106186795 + AT_rich Low_complexity Low_complexity 1 41 0 1333 159 51 73 chr3 111851158 111851472 -106185686 + MER49 LTR ERV1 1 307 -616 2618 180 41 89 chr3 111851525 111852053 -106185105 + MER4D LTR ERV1 249 738 -165 3898 93 15 0 chr3 111852053 111852599 -106184559 - MER41A LTR ERV1 0 554 1 2618 180 41 89 chr3 111852599 111852758 -106184400 + MER4D LTR ERV1 738 903 0 259 248 60 8 chr3 111852784 111852917 -106184241 - L1ME4a LINE L1 -5 6116 5977 203 217 22 0 chr3 111853671 111853717 -106183441 + MIR SINE MIR 216 262 0 21 36 0 0 chr3 111854115 111854143 -106183015 + AT_rich Low_complexity Low_complexity 1 28 0 1527 298 181 21 chr3 111854994 111855806 -106181352 + L2 LINE L2 1240 2181 -1133 792 315 116 49 chr3 111856311 111857116 -106180042 + L2 LINE L2 2384 3257 -56 201 345 0 0 chr3 111858098 111858156 -106179002 + (GACTG)n Simple_repeat Simple_repeat 2 59 0 196 315 37 0 chr3 111858212 111858266 -106178892 + L2 LINE L2 3215 3270 -2 463 198 0 12 chr3 111858450 111858531 -106178627 + AluJ/FLAM SINE Alu 1 80 -232 1020 136 0 37 chr3 111858531 111858693 -106178465 + AluJo/FRAM SINE Alu 147 302 -10 265 317 103 29 chr3 111858978 111859328 -106177830 + L1ME LINE L1 5298 5673 -489 632 247 65 5 chr3 111859463 111859649 -106177509 - L2 LINE L2 -4 3309 3113 27 49 0 0 chr3 111859816 111859857 -106177301 + AT_rich Low_complexity Low_complexity 1 41 0 332 297 0 2 chr3 111860238 111860385 -106176773 + MER63 DNA MER1_type 38 1688 0 251 330 112 5 chr3 111860714 111860902 -106176256 - L2 LINE L2 -4 3309 3102 34 0 0 0 chr3 111862691 111862725 -106174433 + AT_rich Low_complexity Low_complexity 1 34 0 326 264 23 0 chr3 111862728 111862815 -106174343 + L1MC4 LINE L1 6614 6702 -1340 673 312 5 0 chr3 111862907 111863093 -106174065 - MER5A DNA MER1_type 0 189 3 206 326 12 35 chr3 111863370 111863456 -106173702 - MIR SINE MIR -111 151 68 365 305 96 30 chr3 111863779 111863946 -106173212 + MIR3 SINE MIR 5 182 -26 204 40 0 0 chr3 111865383 111865408 -106171750 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr3 111865892 111865914 -106171244 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr3 111866181 111866216 -106170942 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr3 111866313 111866344 -106170814 + AT_rich Low_complexity Low_complexity 1 31 0 2544 52 0 0 chr3 111866907 111867213 -106169945 + AluY SINE Alu 1 306 -5 184 197 141 84 chr3 111867298 111867369 -106169789 + L2 LINE L2 1366 1440 -1874 221 408 39 0 chr3 111867693 111867796 -106169362 + L2 LINE L2 3147 3253 -19 188 340 0 0 chr3 111867925 111867978 -106169180 + L3 LINE CR1 1524 1576 -1 2296 100 3 0 chr3 111868122 111868423 -106168735 - AluSq SINE Alu -11 302 1 1264 265 187 43 chr3 111868436 111868565 -106168593 - LTR41 LTR ERVL -9 764 655 2008 122 0 3 chr3 111868565 111868851 -106168307 + AluSg SINE Alu 7 291 -19 1264 265 187 43 chr3 111868851 111869389 -106167769 - LTR41 LTR ERVL -118 655 1 309 272 25 89 chr3 111869967 111870125 -106167033 + MIR SINE MIR 88 235 -27 263 367 20 0 chr3 111870406 111870504 -106166654 + MIR SINE MIR 53 152 -56 317 257 113 37 chr3 111870597 111870742 -106166416 + MIR SINE MIR 17 169 -39 214 191 24 0 chr3 111870837 111870879 -106166279 + GA-rich Low_complexity Low_complexity 2 44 0 342 237 26 26 chr3 111870880 111870994 -106166164 - MER104 DNA Tc2 -63 117 4 359 306 8 22 chr3 111871162 111871296 -106165862 - L2 LINE L2 -3 3310 3179 924 257 140 105 chr3 111871800 111872322 -106164836 - MER39 LTR ERV1 -2 705 1 1835 293 98 55 chr3 111873145 111873799 -106163359 + HAL1 LINE L1 5 629 -1878 1550 199 13 3 chr3 111873799 111874106 -106163052 + AluJb SINE Alu 2 311 -1 1835 293 98 55 chr3 111874106 111874785 -106162373 + HAL1 LINE L1 629 1427 -1080 186 43 0 0 chr3 111874785 111874808 -106162350 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1835 293 98 55 chr3 111874808 111875143 -106162015 + HAL1 LINE L1 1427 1746 -761 316 320 19 73 chr3 111875418 111875624 -106161534 - LTR67 LTR ERVL -359 198 4 895 263 66 74 chr3 111875637 111876257 -106160901 + HAL1 LINE L1 1770 2384 -123 232 320 124 6 chr3 111876428 111876606 -106160552 + L1ME LINE L1 5531 5729 -392 1518 120 0 38 chr3 111876768 111877113 -106160045 + L1PA7 LINE L1 5526 5892 -274 2449 60 0 0 chr3 111877113 111877414 -106159744 - AluY SINE Alu -10 301 1 1518 120 0 38 chr3 111877414 111877664 -106159494 + L1PA7 LINE L1 5892 6157 -9 22 0 0 0 chr3 111877664 111877686 -106159472 + AT_rich Low_complexity Low_complexity 1 22 0 242 228 0 0 chr3 111877734 111877791 -106159367 + A-rich Low_complexity Low_complexity 4 60 0 1226 278 26 28 chr3 111877878 111878346 -106158812 - MLT1H LTR MaLR -7 542 14 1146 266 72 55 chr3 111878387 111878974 -106158184 + L1MC5 LINE L1 5291 5887 -1921 640 246 80 86 chr3 111879622 111879996 -106157162 + L1MC5 LINE L1 6698 7069 -892 28 33 0 49 chr3 111880356 111880417 -106156741 + AT_rich Low_complexity Low_complexity 1 58 0 2590 137 18 9 chr3 111880624 111881069 -106156089 - L1PA16 LINE L1 0 6166 5718 3284 46 12 0 chr3 111881087 111881499 -106155659 - L1PA5 LINE L1 -1 6468 6052 3795 41 14 5 chr3 111881499 111882123 -106155035 + L1P2 LINE L1 5107 5737 -417 3279 166 13 25 chr3 111882121 111883186 -106153972 - L1PA5 LINE L1 -438 6043 4995 * 3210 135 0 8 chr3 111886065 111886548 -106150610 - L1PA5 LINE L1 -5971 490 12 6831 69 7 4 chr3 111886548 111888144 -106149014 + L1PA8 LINE L1 4587 6168 -4 1697 173 77 111 chr3 111888918 111889449 -106147709 + MLT2B1 LTR ERVL 1 513 -7 217 158 61 110 chr3 111889715 111889797 -106147361 - L2 LINE L2 0 3313 3236 1021 278 46 52 chr3 111890725 111891246 -106145912 - L2 LINE L2 -2 3311 2794 228 324 99 18 chr3 111891568 111891679 -106145479 - L2 LINE L2 -13 3300 3181 200 57 0 29 chr3 111891858 111891893 -106145265 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 190 284 95 32 chr3 111892223 111892318 -106144840 - MIR SINE MIR -77 185 85 217 259 0 0 chr3 111894058 111894112 -106143046 + T-rich Low_complexity Low_complexity 1 54 0 23 0 0 0 chr3 111895001 111895024 -106142134 + AT_rich Low_complexity Low_complexity 1 23 0 630 269 29 12 chr3 111895243 111895414 -106141744 + MLT1L LTR MaLR 98 271 -344 539 288 79 14 chr3 111895469 111895684 -106141474 + MLT1L LTR MaLR 356 584 -31 2412 127 36 14 chr3 111895935 111896354 -106140804 - MSTA LTR MaLR 0 428 1 423 352 15 20 chr3 111896730 111896926 -106140232 + HERVL LTR ERVL 3434 3628 -2026 671 185 8 0 chr3 111896931 111897050 -106140108 + FLAM_C SINE Alu 1 120 -23 417 39 0 0 chr3 111897050 111897101 -106140057 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 391 259 84 0 chr3 111897204 111897335 -106139823 - L1MB3 LINE L1 -293 5890 5749 8446 169 45 32 chr3 111897345 111899085 -106138073 - L1M4c LINE L1 -4608 1776 14 289 311 40 13 chr3 111899087 111899238 -106137920 + HERVL LTR ERVL 3790 3944 -1710 382 311 72 31 chr3 111899375 111899568 -106137590 + HERVL LTR ERVL 4701 4901 -753 7352 169 15 2 chr3 111900287 111901568 -106135590 + HSMAR2 DNA Mariner 1 1298 -4 223 274 0 0 chr3 111901591 111901653 -106135505 + (TA)n Simple_repeat Simple_repeat 1 62 0 348 282 30 119 chr3 111901802 111902004 -106135154 + MIR SINE MIR 46 229 -33 440 288 108 69 chr3 111902366 111902856 -106134302 - MLT1J LTR MaLR 0 511 3 2150 233 18 38 chr3 111903527 111904080 -106133078 + MER82 DNA MER2_type 111 652 -1 25 51 0 0 chr3 111904793 111904832 -106132326 + AT_rich Low_complexity Low_complexity 1 39 0 2667 251 40 30 chr3 111904956 111905971 -106131187 - L1ME1 LINE L1 -6 6229 5202 1121 216 80 6 chr3 111905976 111906327 -106130831 - L1ME1 LINE L1 -1142 5073 4697 464 261 79 36 chr3 111906349 111907109 -106130049 - L1ME1 LINE L1 -1949 4266 3352 1051 304 25 6 chr3 111907153 111907479 -106129679 + MER58B DNA MER1_type 1 332 -9 2077 282 85 35 chr3 111907490 111908220 -106128938 - L1ME1 LINE L1 -2906 3309 2617 1206 196 38 107 chr3 111908220 111908612 -106128546 + MLT1A1 LTR MaLR 1 365 0 2077 282 85 35 chr3 111908612 111909229 -106127929 - L1ME1 LINE L1 -3598 2617 2032 222 37 0 0 chr3 111909229 111909256 -106127902 + (TCTA)n Simple_repeat Simple_repeat 1 27 0 2077 282 85 35 chr3 111909256 111909921 -106127237 - L1ME1 LINE L1 -4183 2032 1252 * 3522 188 87 33 chr3 111909916 111910831 -106126327 - L1 LINE L1 -771 5375 4411 2881 210 35 35 chr3 111910832 111911538 -106125620 + L1MA10 LINE L1 5594 6299 -35 308 305 21 59 chr3 111911558 111911730 -106125428 + L1 LINE L1 3729 3895 -2251 2190 179 27 99 chr3 111911730 111912284 -106124874 + MLT2B2 LTR ERVL 2 515 0 308 305 21 59 chr3 111912284 111912298 -106124860 + L1 LINE L1 3895 3908 -2238 2877 70 0 0 chr3 111912377 111912746 -106124412 - L1PA6 LINE L1 -302 5852 5484 2233 84 12 16 chr3 111912746 111913062 -106124096 + L1PA6 LINE L1 5831 6151 -3 652 262 120 41 chr3 111913188 111913735 -106123423 + MLT1G1 LTR MaLR 10 593 -2 4042 80 17 31 chr3 111913932 111914315 -106122843 - L1PB1 LINE L1 -3 6148 5776 225 0 0 0 chr3 111914315 111914340 -106122818 + (TG)n Simple_repeat Simple_repeat 2 26 0 4042 80 17 31 chr3 111914340 111914560 -106122598 - L1PB1 LINE L1 -375 5776 5554 259 345 0 0 chr3 111914607 111914723 -106122435 + L1 LINE L1 4414 4529 -1617 1382 255 143 29 chr3 111915040 111915379 -106121779 - MLT1E LTR MaLR -16 577 157 2486 53 0 0 chr3 111915379 111915683 -106121475 + AluY SINE Alu 3 306 -5 1382 255 143 29 chr3 111915683 111915861 -106121297 - MLT1E LTR MaLR -436 157 1 302 245 36 66 chr3 111916149 111916345 -106120813 + L1 LINE L1 5209 5398 -748 3124 171 13 25 chr3 111919345 111920411 -106116747 + L1PA6 LINE L1 4680 5728 -438 1957 49 37 0 chr3 111920409 111920654 -106116504 - L1P2 LINE L1 -417 5737 5484 * 2135 93 16 16 chr3 111920654 111920969 -106116189 + L1PA6 LINE L1 5831 6151 -3 652 262 120 41 chr3 111921095 111921642 -106115516 + MLT1G1 LTR MaLR 10 593 -2 4042 80 17 31 chr3 111921839 111922222 -106114936 - L1PB1 LINE L1 -3 6148 5776 225 0 0 0 chr3 111922222 111922247 -106114911 + (TG)n Simple_repeat Simple_repeat 2 26 0 4042 80 17 31 chr3 111922247 111922467 -106114691 - L1PB1 LINE L1 -375 5776 5554 259 345 0 0 chr3 111922514 111922630 -106114528 + L1M1 LINE L1 4414 4529 -1617 1382 255 143 29 chr3 111922947 111923286 -106113872 - MLT1E LTR MaLR -16 577 157 2486 53 0 0 chr3 111923286 111923590 -106113568 + AluY SINE Alu 3 306 -5 1382 255 143 29 chr3 111923590 111923768 -106113390 - MLT1E LTR MaLR -436 157 1 291 224 49 63 chr3 111924056 111924345 -106112813 + L1M1 LINE L1 5209 5492 -659 2430 48 0 0 chr3 111924361 111924651 -106112507 + AluY SINE Alu 20 309 -2 225 346 149 0 chr3 111925822 111925929 -106111229 + L2 LINE L2 3191 3313 0 317 268 185 17 chr3 111925941 111926243 -106110915 + L1ME4a LINE L1 5724 6076 -45 21 36 0 0 chr3 111926264 111926292 -106110866 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr3 111926359 111926383 -106110775 + AT_rich Low_complexity Low_complexity 1 24 0 1772 124 62 0 chr3 111926705 111926979 -106110179 - AluSg SINE Alu -19 291 1 23 97 0 0 chr3 111927118 111927190 -106109968 + AT_rich Low_complexity Low_complexity 1 72 0 393 320 106 20 chr3 111927250 111927553 -106109605 - L1M4 LINE L1 -1446 4700 4372 * 629 307 81 55 chr3 111927525 111928128 -106109030 - L1M4 LINE L1 -2962 3184 2566 374 294 18 0 chr3 111928256 111928365 -106108793 + MER94 DNA DNA 11 121 -13 2098 77 7 18 chr3 111928588 111928861 -106108297 + AluSx SINE Alu 22 291 -21 244 286 41 10 chr3 111929268 111929366 -106107792 + L1ME4a LINE L1 5988 6088 -33 391 337 80 6 chr3 111929540 111929715 -106107443 + MIR SINE MIR 71 258 -4 217 167 0 24 chr3 111929744 111929786 -106107372 + (CAA)n Simple_repeat Simple_repeat 2 42 0 211 214 0 0 chr3 111930463 111930505 -106106653 + L2 LINE L2 3267 3308 -5 180 0 0 0 chr3 111930811 111930831 -106106327 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 845 288 101 17 chr3 111931115 111931522 -106105636 - MLT1J1 LTR MaLR -5 441 1 1205 283 90 56 chr3 111931708 111932277 -106104881 + MLT1E LTR MaLR 1 588 -5 200 210 32 16 chr3 111932397 111932459 -106104699 + (TA)n Simple_repeat Simple_repeat 1 63 0 193 245 0 61 chr3 111932730 111932779 -106104379 + L2 LINE L2 3191 3236 -36 437 279 93 29 chr3 111933070 111933242 -106103916 + MIR SINE MIR 20 202 -60 23 86 0 0 chr3 111933244 111933302 -106103856 + AT_rich Low_complexity Low_complexity 1 58 0 577 178 161 0 chr3 111933392 111933510 -106103648 + FLAM_A SINE Alu 6 142 0 399 275 37 19 chr3 111933513 111933702 -106103456 - MIR SINE MIR 0 262 18 2061 157 156 138 chr3 111933774 111934197 -106102961 - L1MC3 LINE L1 -159 7626 7093 261 352 0 0 chr3 111934197 111934288 -106102870 - MLT1F1 LTR MaLR -442 125 35 2061 157 156 138 chr3 111934288 111934570 -106102588 - L1MC3 LINE L1 -692 7093 6817 207 280 130 30 chr3 111934995 111935095 -106102063 - MIR3 SINE MIR -6 202 93 192 306 0 0 chr3 111936876 111936925 -106100233 + MER5A DNA MER1_type 62 110 -79 205 282 0 26 chr3 111939526 111939604 -106097554 + (CATTT)n Simple_repeat Simple_repeat 3 78 0 368 236 147 70 chr3 111940505 111940619 -106096539 - MER5A DNA MER1_type -3 186 55 1367 235 48 14 chr3 111940619 111940972 -106096186 + MLT1A1 LTR MaLR 1 365 0 368 236 147 70 chr3 111940972 111941014 -106096144 - MER5A DNA MER1_type -134 55 18 2538 144 11 39 chr3 111941087 111941544 -106095614 - MER65A LTR ERV1 -1 444 1 2078 91 3 23 chr3 111941959 111942268 -106094890 - L1PA7 LINE L1 0 6154 5852 913 152 60 113 chr3 111943890 111944173 -106092985 + L1MD3 LINE L1 7728 7995 0 1238 138 20 0 chr3 111944367 111944570 -106092588 + Tigger2 DNA MER2_type 4 210 -2508 813 175 13 32 chr3 111944572 111944726 -106092432 + Tigger2 DNA MER2_type 2567 2717 -1 182 254 56 28 chr3 111944727 111944798 -106092360 + MIR SINE MIR 156 228 -34 22 0 0 0 chr3 111945489 111945511 -106091647 + AT_rich Low_complexity Low_complexity 1 22 0 333 189 67 44 chr3 111945675 111945765 -106091393 + MLT1K LTR MaLR 497 588 0 593 217 74 37 chr3 111946392 111946581 -106090577 - MER58B DNA MER1_type -1 340 145 22 35 0 0 chr3 111949063 111949092 -106088066 + AT_rich Low_complexity Low_complexity 1 29 0 204 350 0 0 chr3 111950066 111950126 -106087032 + MIR SINE MIR 34 93 -115 335 258 58 8 chr3 111950224 111950344 -106086814 - MIR SINE MIR -71 191 66 297 0 0 0 chr3 111950536 111950569 -106086589 + (CA)n Simple_repeat Simple_repeat 2 34 0 1847 199 20 9 chr3 111950964 111951306 -106085852 + MLT1A1 LTR MaLR 8 353 -12 649 92 0 20 chr3 111951307 111951405 -106085753 + L1PA11 LINE L1 6066 6161 -13 216 0 0 0 chr3 111951411 111951435 -106085723 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2156 180 40 42 chr3 111951659 111951693 -106085465 - MSTB2 LTR MaLR -2 455 422 2002 176 87 8 chr3 111951693 111952086 -106085072 + MSTA LTR MaLR 1 424 -4 2156 180 40 42 chr3 111952086 111952507 -106084651 - MSTB2 LTR MaLR -35 422 1 279 277 113 7 chr3 111952572 111952713 -106084445 + HAL1b LINE L1 219 374 -974 230 335 13 19 chr3 111952822 111952977 -106084181 + L1MCc LINE L1 242 395 -6028 1520 286 66 39 chr3 111953221 111953634 -106083524 + L1MCc LINE L1 816 1255 -5168 2294 113 0 0 chr3 111953634 111953945 -106083213 + AluY SINE Alu 1 311 0 1520 286 66 39 chr3 111953945 111954198 -106082960 + L1MCc LINE L1 1255 1500 -4923 303 118 66 66 chr3 111954220 111954296 -106082862 + HAL1b LINE L1 365 440 -908 1425 170 0 4 chr3 111954393 111954628 -106082530 - AluJb SINE Alu -20 292 59 268 333 0 20 chr3 111954859 111954958 -106082200 - L2 LINE L2 -16 3297 3201 833 269 91 28 chr3 111954959 111955387 -106081771 + HAL1b LINE L1 707 1161 -187 314 276 39 0 chr3 111955403 111955530 -106081628 + HAL1b LINE L1 1210 1341 -7 23 0 0 0 chr3 111957629 111957652 -106079506 + AT_rich Low_complexity Low_complexity 1 23 0 222 303 0 37 chr3 111958033 111958142 -106079016 + A-rich Low_complexity Low_complexity 5 109 0 841 156 81 66 chr3 111958569 111958780 -106078378 - MER20 DNA MER1_type -5 214 1 207 182 0 0 chr3 111959617 111959661 -106077497 + (TTTG)n Simple_repeat Simple_repeat 3 46 0 309 339 39 58 chr3 111960014 111960271 -106076887 - L1MC4a LINE L1 -1917 5891 5640 1245 207 3 24 chr3 111960383 111960673 -106076485 + L1MB7 LINE L1 5894 6177 -7 249 109 0 0 chr3 111961232 111961278 -106075880 + (TA)n Simple_repeat Simple_repeat 1 46 0 337 151 79 8 chr3 111962069 111962195 -106074963 + (TA)n Simple_repeat Simple_repeat 1 135 0 223 203 27 0 chr3 111962885 111962959 -106074199 + (TA)n Simple_repeat Simple_repeat 2 77 0 2198 194 37 131 chr3 111963398 111964164 -106072994 + LTR8A LTR ERV1 34 727 0 180 200 0 0 chr3 111964623 111964663 -106072495 + (TA)n Simple_repeat Simple_repeat 1 40 0 233 191 206 0 chr3 111964750 111964813 -106072345 - MIR SINE MIR -109 153 78 370 169 0 0 chr3 111964822 111964893 -106072265 + L1MA8 LINE L1 6210 6280 -11 21 36 0 0 chr3 111964971 111964999 -106072159 + AT_rich Low_complexity Low_complexity 1 28 0 2945 40 0 0 chr3 111966047 111966399 -106070759 - L1PA5 LINE L1 -379 5775 5424 3079 44 10 0 chr3 111966399 111966778 -106070380 + L1PA5 LINE L1 5766 6152 -2 252 0 0 0 chr3 111967420 111967448 -106069710 + (A)n Simple_repeat Simple_repeat 1 28 0 341 182 30 0 chr3 111968801 111968867 -106068291 + MLT1K LTR MaLR 521 588 0 412 104 30 0 chr3 111970222 111970319 -106066839 + L1PA16 LINE L1 6080 6178 0 1710 187 13 0 chr3 111970458 111970763 -106066395 + AluSx SINE Alu 1 309 -3 499 267 5 73 chr3 111970813 111971004 -106066154 - MER5B DNA MER1_type 0 178 1 185 235 0 0 chr3 111971536 111971570 -106065588 + L2 LINE L2 3271 3304 -9 408 40 0 0 chr3 111972148 111972198 -106064960 + (TG)n Simple_repeat Simple_repeat 2 51 0 2027 143 30 24 chr3 111972205 111972576 -106064582 + THE1C LTR MaLR 1 373 -2 1282 206 17 90 chr3 111973031 111973385 -106063773 + MLT2B3 LTR ERVL 1 328 -226 2059 233 72 24 chr3 111973392 111974305 -106062853 - L1MC/D LINE L1 -786 5754 4895 1278 268 21 9 chr3 111974310 111974639 -106062519 + MLT1E2 LTR MaLR 294 626 0 841 275 103 34 chr3 111974642 111975080 -106062078 + MLT1E LTR MaLR 56 593 0 422 262 82 6 chr3 111975081 111975114 -106062044 - L1MC/D LINE L1 -4127 2413 2384 192 40 0 0 chr3 111975114 111975139 -106062019 + (TG)n Simple_repeat Simple_repeat 2 26 0 422 262 82 6 chr3 111975139 111975288 -106061870 - L1MC/D LINE L1 -4156 2384 2217 414 234 0 89 chr3 111975297 111975421 -106061737 + MLT1E2 LTR MaLR 2 114 -391 980 203 0 40 chr3 111975422 111975624 -106061534 + MLT1A1 LTR MaLR 1 194 -171 767 191 7 0 chr3 111975753 111975889 -106061269 + MLT1A1 LTR MaLR 229 365 0 1574 283 75 13 chr3 111975901 111976367 -106060791 + MLT1E2 LTR MaLR 129 623 -3 644 221 54 7 chr3 111976544 111976693 -106060465 + MLT1D LTR MaLR 347 502 -3 186 103 0 0 chr3 111976713 111976742 -106060416 + (TG)n Simple_repeat Simple_repeat 2 30 0 909 292 75 35 chr3 111976795 111978026 -106059132 - L1ME LINE L1 -4360 2180 810 298 288 38 44 chr3 111978457 111978617 -106058541 - L1ME LINE L1 -6190 350 192 569 230 0 16 chr3 111978620 111978746 -106058412 + AluJb SINE Alu 9 132 -180 481 337 0 22 chr3 111978747 111978931 -106058227 - L1ME LINE L1 -6336 204 25 511 250 29 0 chr3 111979152 111979288 -106057870 + MER103 DNA DNA 19 158 -8 823 246 144 25 chr3 111980274 111980624 -106056534 - MLT1G3 LTR MaLR 0 542 153 413 116 14 0 chr3 111980636 111980705 -106056453 + (GA)n Simple_repeat Simple_repeat 2 71 0 239 295 26 26 chr3 111980797 111980875 -106056283 - MLT1G3 LTR MaLR -472 123 46 386 103 0 17 chr3 111980875 111980933 -106056225 + L1PA4 LINE L1 6030 6086 -69 1798 193 21 34 chr3 111981114 111981164 -106055994 - MLT2C2 LTR ERVL -8 456 407 621 92 25 0 chr3 111981164 111981284 -106055874 + (TAGA)n Simple_repeat Simple_repeat 3 125 0 1798 193 21 34 chr3 111981284 111981764 -106055394 - MLT2C2 LTR ERVL -57 407 1 4946 188 33 18 chr3 111981768 111981897 -106055261 - ERVL-C2 LTR ERVL -12 5752 5626 1778 152 10 17 chr3 111981897 111982193 -106054965 + AluJo SINE Alu 1 294 -18 4946 188 33 18 chr3 111982193 111983044 -106054114 - ERVL-C2 LTR ERVL -138 5626 4758 189 325 13 93 chr3 111983044 111983195 -106053963 - MIR SINE MIR -86 176 38 675 264 79 31 chr3 111983325 111983552 -106053606 + LTR33 LTR ERVL 12 249 -272 275 314 110 0 chr3 111983627 111983745 -106053413 + ERVL LTR ERVL 4527 4657 -1107 330 155 0 0 chr3 111983810 111983868 -106053290 + L1PB4 LINE L1 5643 5700 -456 1679 180 10 3 chr3 111983868 111984295 -106052863 - AluJo SINE Alu 0 434 6 432 183 0 0 chr3 111984302 111984384 -106052774 + L1PB4 LINE L1 5712 5793 -510 522 223 0 0 chr3 111984384 111984505 -106052653 + (TA)n Simple_repeat Simple_repeat 2 122 0 1806 200 3 16 chr3 111984508 111984888 -106052270 + L1PB4 LINE L1 5777 6151 -5 687 308 39 22 chr3 111985013 111985325 -106051833 + ERVL LTR ERVL 4787 5103 -661 816 266 133 0 chr3 111985842 111986068 -106051090 + LTR33 LTR ERVL 243 498 -23 26 30 0 0 chr3 111986933 111986966 -106050192 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr3 111987811 111987832 -106049326 + AT_rich Low_complexity Low_complexity 1 21 0 348 24 0 0 chr3 111988602 111988643 -106048515 + (TC)n Simple_repeat Simple_repeat 2 42 0 244 224 0 0 chr3 111988786 111988835 -106048323 - MIR SINE MIR -141 121 73 207 275 0 0 chr3 111989317 111989357 -106047801 - L2 LINE L2 -25 3247 3208 552 322 58 0 chr3 111989878 111990049 -106047109 - MER5A DNA MER1_type 0 189 9 435 229 9 48 chr3 111990060 111990165 -106046993 + MER5A DNA MER1_type 1 101 -88 1179 287 67 30 chr3 111990307 111990794 -106046364 + MLT1H LTR MaLR 1 547 -2 282 208 20 10 chr3 111992066 111992167 -106044991 + L1MC4a LINE L1 5328 5429 -2379 570 310 71 18 chr3 111992373 111992712 -106044446 + L1MC4a LINE L1 5560 5916 -1892 22 35 0 0 chr3 111992862 111992891 -106044267 + AT_rich Low_complexity Low_complexity 1 29 0 186 43 0 0 chr3 111993523 111993546 -106043612 + (TA)n Simple_repeat Simple_repeat 1 23 0 3634 104 37 6 chr3 111993548 111994095 -106043063 - L1PA10 LINE L1 0 6168 5605 2727 152 15 2 chr3 111994095 111994555 -106042603 + L1P LINE L1 4588 5053 -1093 26 30 0 0 chr3 111995386 111995419 -106041739 + AT_rich Low_complexity Low_complexity 1 33 0 228 349 12 29 chr3 111995944 111996116 -106041042 - L1MEd LINE L1 -5038 1081 913 23 33 0 0 chr3 111996561 111996591 -106040567 + AT_rich Low_complexity Low_complexity 1 30 0 260 335 80 38 chr3 111996808 111997047 -106040111 + L2 LINE L2 2505 2753 -561 226 169 68 51 chr3 111997850 111997909 -106039249 + L2 LINE L2 3251 3310 -3 1267 283 75 106 chr3 111998169 111999121 -106038037 + L1MCc LINE L1 30 953 -5470 3183 109 11 0 chr3 111999121 111999580 -106037578 + L1PA12 LINE L1 5705 6168 0 1267 283 75 106 chr3 111999580 111999608 -106037550 + L1MCc LINE L1 953 980 -5443 505 284 49 66 chr3 111999603 111999973 -106037185 + L1MCc LINE L1 1239 1606 -4887 * 15389 53 65 3 chr3 111999970 112001999 -106035159 + L1P LINE L1 3 2157 -3989 16021 92 10 56 chr3 112002116 112003499 -106033659 - L1P LINE L1 -856 5290 3974 833 84 0 0 chr3 112003499 112003606 -106033552 - AluY SINE Alu -14 297 191 16021 92 10 56 chr3 112003606 112004747 -106032411 - L1P LINE L1 -2172 3974 2782 9476 100 7 1 chr3 112004747 112006113 -106031045 + L1P LINE L1 1395 2768 -3378 1346 202 22 41 chr3 112006112 112006474 -106030684 - L1 LINE L1 -768 5614 5260 * 1592 267 51 37 chr3 112006472 112007611 -106029547 - L1 LINE L1 -3548 2834 1611 1672 174 7 33 chr3 112007611 112007916 -106029242 - AluJo SINE Alu -15 297 1 1592 267 51 37 chr3 112007916 112008260 -106028898 - L1 LINE L1 -4771 1611 1273 5790 273 21 21 chr3 112008360 112010036 -106027122 - L1M3de LINE L1 -4645 2008 572 278 182 0 18 chr3 112010154 112010209 -106026949 + MLT2B3 LTR ERVL 18 71 -483 1493 209 33 87 chr3 112010293 112010882 -106026276 + MLT2B3 LTR ERVL 70 516 -4 971 306 64 29 chr3 112010886 112011651 -106025507 - L1MEc LINE L1 -4530 1866 1075 9317 37 3 2 chr3 112011684 112013568 -106023590 - L1PA3 LINE L1 -4 6151 4239 2184 106 0 3 chr3 112015235 112015527 -106021631 - AluSg SINE Alu -19 291 1 2197 129 0 3 chr3 112015529 112015840 -106021318 - AluSx SINE Alu -2 310 1 9744 70 1 5 chr3 112016022 112017336 -106019822 - L1P LINE L1 -1640 4506 3197 2421 101 6 8 chr3 112018525 112018880 -106018278 + THE1A LTR MaLR 2 355 0 2594 128 8 5 chr3 112018880 112019278 -106017880 + THE1A-int LTR MaLR 1 399 -1181 307 193 0 113 chr3 112019335 112019485 -106017673 + AluJb SINE Alu 3 135 -167 231 108 0 0 chr3 112019902 112019939 -106017219 - AluJo SINE Alu -4 296 260 1403 153 22 41 chr3 112020531 112020845 -106016313 - L1MC3 LINE L1 -72 7713 7406 1705 234 26 0 chr3 112021625 112022040 -106015118 + L1MC3 LINE L1 7343 7768 -17 906 270 89 3 chr3 112022035 112022330 -106014828 + L1ME1 LINE L1 4631 4958 -1188 * 180 0 0 0 chr3 112022330 112022350 -106014808 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 906 270 89 3 chr3 112022350 112022380 -106014778 + L1ME1 LINE L1 4958 4984 -1162 3971 214 49 32 chr3 112023393 112024432 -106012726 + L1PBa LINE L1 561 1617 -5246 469 209 0 0 chr3 112024532 112024623 -106012535 - FLAM_A SINE Alu -48 94 4 726 154 138 5 chr3 112024626 112024814 -106012344 + L2 LINE L2 1958 2170 -1144 1077 156 78 39 chr3 112024815 112025020 -106012138 - MER20 DNA MER1_type -1 218 6 1798 230 128 13 chr3 112025068 112025538 -106011620 + L2 LINE L2 2177 2700 -614 1523 185 4 0 chr3 112025677 112025936 -106011222 - AluJo SINE Alu -52 260 1 2363 195 58 16 chr3 112026997 112027551 -106009607 + L1MA9 LINE L1 5697 6273 -39 1313 236 45 27 chr3 112027559 112028160 -106008998 + L1ME1 LINE L1 5255 6064 -102 1556 187 30 60 chr3 112028160 112028562 -106008596 - MLT1B LTR MaLR 0 390 1 1313 236 45 27 chr3 112028562 112028661 -106008497 + L1ME1 LINE L1 6064 6160 -6 26 30 0 0 chr3 112028877 112028910 -106008248 + AT_rich Low_complexity Low_complexity 1 33 0 532 235 170 0 chr3 112030452 112030605 -106006553 - MER5A DNA MER1_type -1 188 10 1904 175 31 11 chr3 112030968 112031350 -106005808 - MLT1B LTR MaLR 0 390 1 23 33 0 0 chr3 112031368 112031398 -106005760 + AT_rich Low_complexity Low_complexity 1 30 0 4480 210 80 34 chr3 112031667 112032981 -106004177 + Charlie1a DNA MER1_type 81 1455 0 189 154 0 0 chr3 112033445 112033484 -106003674 + (CAT)n Simple_repeat Simple_repeat 3 41 0 591 284 54 29 chr3 112033510 112033749 -106003409 - MIR SINE MIR -1 261 17 207 0 0 0 chr3 112034001 112034024 -106003134 + (T)n Simple_repeat Simple_repeat 1 23 0 29 0 0 0 chr3 112035739 112035768 -106001390 + AT_rich Low_complexity Low_complexity 1 29 0 302 333 36 29 chr3 112037475 112037613 -105999545 + MIR SINE MIR 2 141 -67 2209 125 105 10 chr3 112037791 112038182 -105998976 - MSTA LTR MaLR 0 428 1 2118 122 0 6 chr3 112038252 112038564 -105998594 + AluSg SINE Alu 1 310 0 21 0 0 0 chr3 112039722 112039743 -105997415 + AT_rich Low_complexity Low_complexity 1 21 0 1042 81 7 0 chr3 112039846 112039982 -105997176 - AluSg/x SINE Alu -17 293 157 12141 131 19 13 chr3 112039982 112041942 -105995216 + Tigger1 DNA MER2_type 447 2418 0 314 293 172 6 chr3 112042464 112042638 -105994520 + MIR SINE MIR 59 261 -1 2197 129 0 3 chr3 112042884 112043195 -105993963 + AluSx SINE Alu 1 310 -2 2184 106 0 3 chr3 112043197 112043489 -105993669 + AluSg SINE Alu 1 291 -19 45 19 0 0 chr3 112043800 112043852 -105993306 + AT_rich Low_complexity Low_complexity 1 52 0 2297 150 27 7 chr3 112044265 112044711 -105992447 - L1 LINE L1 -1426 4720 4266 * 2489 218 48 40 chr3 112044701 112044855 -105992303 - L1 LINE L1 -2659 3487 3336 2103 131 7 0 chr3 112044855 112045152 -105992006 + AluSx SINE Alu 6 304 -8 2489 218 48 40 chr3 112045152 112045838 -105991320 - L1 LINE L1 -2810 3336 2641 * 5157 191 30 12 chr3 112045837 112047387 -105989771 + L1MA6 LINE L1 4724 6297 -3 201 323 52 0 chr3 112047703 112047799 -105989359 + GA-rich Low_complexity Low_complexity 4 104 0 * 243 167 25 25 chr3 112047727 112047851 -105989307 + GA-rich Low_complexity Low_complexity 1 124 0 220 207 23 46 chr3 112049988 112050075 -105987083 + (TTATA)n Simple_repeat Simple_repeat 3 87 0 1319 255 11 30 chr3 112051498 112051870 -105985288 + MLT1A1 LTR MaLR 1 365 0 430 271 62 0 chr3 112052284 112052413 -105984745 + MIR SINE MIR 64 200 -62 257 260 14 14 chr3 112052449 112052522 -105984636 + (CATATA)n Simple_repeat Simple_repeat 3 75 0 416 308 32 13 chr3 112052777 112052933 -105984225 - MIR SINE MIR -21 241 83 536 105 0 12 chr3 112052960 112053046 -105984112 + (TA)n Simple_repeat Simple_repeat 1 85 0 224 59 29 0 chr3 112053069 112053103 -105984055 + (TA)n Simple_repeat Simple_repeat 1 35 0 211 163 70 0 chr3 112053235 112053278 -105983880 + L2 LINE L2 3268 3313 0 529 190 11 121 chr3 112053439 112053613 -105983545 + MER96B DNA MER1_type? 3 157 -260 537 279 82 6 chr3 112055634 112055817 -105981341 + MIR SINE MIR 64 260 -2 494 250 12 3 chr3 112056893 112057064 -105980094 + MLT1I LTR MaLR 1 220 -189 2360 38 41 3 chr3 112057126 112057418 -105979740 - AluY SINE Alu -8 303 1 264 217 0 17 chr3 112057426 112057486 -105979672 + MER69 DNA AcHobo 2464 2522 -4 375 294 49 42 chr3 112058080 112058223 -105978935 + MIR SINE MIR 49 192 -70 2215 209 35 49 chr3 112058341 112058385 -105978773 + MLT1F LTR MaLR 1 44 -498 1177 201 88 49 chr3 112058385 112058669 -105978489 - AluJo SINE Alu -5 297 3 2215 209 35 49 chr3 112058669 112059174 -105977984 + MLT1F LTR MaLR 44 542 0 1557 149 41 2 chr3 112059775 112060074 -105977084 - MSTA LTR MaLR 0 428 54 1171 216 47 14 chr3 112061106 112061402 -105975756 + MARNA DNA Mariner 111 416 -170 607 275 118 18 chr3 112061874 112062103 -105975055 - MIR SINE MIR -9 253 2 1380 207 43 37 chr3 112062142 112062490 -105974668 - MLT1A1 LTR MaLR -11 354 5 333 240 142 31 chr3 112063111 112063336 -105973822 - L1ME3A LINE L1 -220 5946 5697 345 332 39 20 chr3 112063453 112063723 -105973435 + MLT1J2 LTR MaLR 69 379 -132 630 260 103 35 chr3 112063781 112064288 -105972870 - L1ME3A LINE L1 -613 5549 5005 1363 334 38 33 chr3 112064499 112064864 -105972294 + L3 LINE CR1 799 1170 -407 351 0 0 0 chr3 112064864 112064903 -105972255 + (TG)n Simple_repeat Simple_repeat 2 40 0 1363 334 38 33 chr3 112064903 112065228 -105971930 + L3 LINE CR1 1170 1492 -85 471 315 31 0 chr3 112065233 112065395 -105971763 - MIR SINE MIR -2 260 94 190 322 161 11 chr3 112065461 112065548 -105971610 + L3 LINE CR1 1476 1575 -2 414 244 23 143 chr3 112066062 112066320 -105970838 - L2 LINE L2 -5 3308 3082 208 257 29 14 chr3 112066474 112066544 -105970614 + MIR SINE MIR 87 145 -63 345 47 0 0 chr3 112066699 112066706 -105970452 + (TG)n Simple_repeat Simple_repeat 1 50 0 345 47 0 0 chr3 112066706 112066749 -105970409 + (TG)n Simple_repeat Simple_repeat 2 44 0 286 204 0 0 chr3 112069534 112069583 -105967575 - L2 LINE L2 -3 3310 3262 660 317 9 9 chr3 112069698 112069919 -105967239 - MIR SINE MIR -10 252 32 489 318 67 64 chr3 112069940 112070599 -105966559 - L2 LINE L2 -107 3165 2504 277 325 102 32 chr3 112070778 112070935 -105966223 - MIR SINE MIR -42 220 53 367 308 23 15 chr3 112071377 112071507 -105965651 - MIR SINE MIR -131 131 1 780 197 104 47 chr3 112071550 112071743 -105965415 + MER63A DNA MER1_type 7 210 0 24 0 0 0 chr3 112072207 112072231 -105964927 + AT_rich Low_complexity Low_complexity 1 24 0 257 333 35 11 chr3 112072748 112072835 -105964323 + MLT1K LTR MaLR 132 220 -368 2169 115 3 0 chr3 112073123 112073419 -105963739 - AluSq SINE Alu -16 297 1 324 48 0 0 chr3 112074348 112074390 -105962768 + (TG)n Simple_repeat Simple_repeat 1 42 0 1073 193 74 70 chr3 112074390 112074660 -105962498 - AluJb SINE Alu -33 279 9 21 0 0 0 chr3 112075069 112075090 -105962068 + AT_rich Low_complexity Low_complexity 1 21 0 192 289 12 60 chr3 112075485 112075568 -105961590 + MIR3 SINE MIR 79 157 -51 841 288 164 16 chr3 112075737 112076116 -105961042 - L2 LINE L2 -27 3286 2852 709 278 34 34 chr3 112078758 112078992 -105958166 + MIR SINE MIR 8 241 -21 264 247 14 14 chr3 112079247 112079320 -105957838 + (TATATG)n Simple_repeat Simple_repeat 3 75 0 595 258 113 16 chr3 112079350 112079536 -105957622 - MIR SINE MIR -56 206 3 276 53 0 0 chr3 112079984 112080022 -105957136 + (TG)n Simple_repeat Simple_repeat 2 39 0 236 250 18 0 chr3 112081307 112081363 -105955795 + G-rich Low_complexity Low_complexity 3 59 0 252 236 28 0 chr3 112081410 112081482 -105955676 + (CCG)n Simple_repeat Simple_repeat 2 75 0 303 49 0 0 chr3 112082710 112082751 -105954407 + (GA)n Simple_repeat Simple_repeat 2 42 0 183 80 0 0 chr3 112083221 112083246 -105953912 + (CTG)n Simple_repeat Simple_repeat 1 25 0 397 277 27 36 chr3 112084901 112085013 -105952145 + MIR3 SINE MIR 91 201 -7 195 343 39 0 chr3 112085708 112085810 -105951348 + MIR SINE MIR 34 139 -123 186 133 0 0 chr3 112086000 112086030 -105951128 + (T)n Simple_repeat Simple_repeat 1 30 0 871 125 0 0 chr3 112088760 112088880 -105948278 + AluSq/x SINE Alu 1 120 -193 2209 104 0 3 chr3 112088996 112089304 -105947854 - AluSq SINE Alu -6 307 1 418 273 23 30 chr3 112089679 112089811 -105947347 - MER94 DNA DNA 0 134 4 224 77 26 0 chr3 112090584 112090623 -105946535 + (GA)n Simple_repeat Simple_repeat 1 40 0 312 341 92 43 chr3 112090976 112091301 -105945857 - L2 LINE L2 -9 3304 2964 678 253 66 69 chr3 112091541 112091904 -105945254 - L1MC4a LINE L1 -1873 5935 5574 263 313 82 22 chr3 112093573 112093707 -105943451 + MIR SINE MIR 120 261 -1 227 283 179 9 chr3 112094898 112095004 -105942154 + MIR3 SINE MIR 77 200 -8 767 267 47 35 chr3 112095435 112095693 -105941465 + MIR SINE MIR 2 262 0 181 30 91 0 chr3 112096387 112096420 -105940738 + T-rich Low_complexity Low_complexity 2 37 0 7483 35 0 0 chr3 112096425 112097344 -105939814 - L1PA3 LINE L1 0 6155 5237 379 355 114 33 chr3 112097560 112097859 -105939299 + L2 LINE L2 2950 3272 0 24 53 0 0 chr3 112098251 112098289 -105938869 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr3 112099268 112099294 -105937864 + AT_rich Low_complexity Low_complexity 1 26 0 237 33 0 0 chr3 112101721 112101751 -105935407 + (CA)n Simple_repeat Simple_repeat 1 30 0 200 314 126 51 chr3 112102205 112102380 -105934778 + MIR3 SINE MIR 8 195 -13 338 329 43 0 chr3 112103437 112103598 -105933560 + MIR SINE MIR 92 259 -3 252 0 0 0 chr3 112103858 112103886 -105933272 + (T)n Simple_repeat Simple_repeat 1 28 0 603 294 29 53 chr3 112104059 112104515 -105932643 - L1PA10 LINE L1 0 6168 5724 507 208 10 0 chr3 112104620 112104721 -105932437 - L1P LINE L1 -3808 2338 2237 * 2327 167 24 0 chr3 112104720 112105146 -105932012 + L1P LINE L1 3818 4253 -1893 2230 46 7 7 chr3 112105146 112105418 -105931740 + L1PA5 LINE L1 5864 6148 -6 182 61 0 30 chr3 112105490 112105523 -105931635 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 2814 170 23 4 chr3 112105523 112106036 -105931122 + L1P LINE L1 4239 4761 -1385 2121 162 28 9 chr3 112106321 112106747 -105930411 - L1 LINE L1 -1426 4720 4287 479 245 14 20 chr3 112106756 112106903 -105930255 - L1 LINE L1 -2657 3489 3344 1256 183 9 0 chr3 112106920 112107149 -105930009 + AluSx SINE Alu 14 244 -68 1184 217 49 4 chr3 112108195 112108486 -105928672 + MSTA LTR MaLR 134 428 0 3578 204 21 5 chr3 112108680 112109791 -105927367 + L1M2 LINE L1 4553 5677 -623 261 333 0 0 chr3 112110644 112110734 -105926424 + (CAG)n Simple_repeat Simple_repeat 2 91 0 343 286 76 17 chr3 112110772 112110891 -105926267 - MIR SINE MIR -5 257 132 771 188 81 91 chr3 112113257 112113577 -105923581 + Charlie1 DNA MER1_type 2445 2761 0 189 154 0 0 chr3 112114041 112114080 -105923078 + (CAT)n Simple_repeat Simple_repeat 3 41 0 590 284 54 29 chr3 112114106 112114345 -105922813 - MIR SINE MIR -1 261 17 198 0 0 0 chr3 112114597 112114619 -105922539 + (T)n Simple_repeat Simple_repeat 1 22 0 194 341 49 6 chr3 112116043 112116207 -105920951 + MIR SINE MIR 92 262 0 234 0 0 0 chr3 112116467 112116493 -105920665 + (T)n Simple_repeat Simple_repeat 1 26 0 15244 130 14 5 chr3 112116677 112120025 -105917133 - L1PA10 LINE L1 -5 6163 2799 22 35 0 0 chr3 112121004 112121033 -105916125 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 112123217 112123239 -105913919 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 112124543 112124565 -105912593 + AT_rich Low_complexity Low_complexity 1 22 0 393 265 94 43 chr3 112124992 112125109 -105912049 - L2 LINE L2 -4 3309 3187 967 204 5 0 chr3 112125112 112125298 -105911860 - MER5A DNA MER1_type -2 187 1 283 296 0 0 chr3 112125992 112126080 -105911078 + T-rich Low_complexity Low_complexity 3 90 0 22 0 0 0 chr3 112127513 112127535 -105909623 + AT_rich Low_complexity Low_complexity 1 22 0 396 334 71 11 chr3 112127874 112128077 -105909081 + MIR SINE MIR 34 247 -15 341 347 16 33 chr3 112128597 112128718 -105908440 - L2 LINE L2 0 3272 3154 488 263 40 29 chr3 112128901 112129076 -105908082 - MER5B DNA MER1_type -1 177 1 1087 163 15 0 chr3 112129346 112129542 -105907616 + L1PB1 LINE L1 2 200 -6663 12520 155 32 7 chr3 112129544 112130033 -105907125 + L1PB1 LINE L1 636 1111 -5756 2214 123 0 0 chr3 112130033 112130341 -105906817 - AluSq SINE Alu -5 308 1 12520 155 32 7 chr3 112130341 112132090 -105905068 + L1PB1 LINE L1 1111 2815 -4052 2318 110 3 0 chr3 112132090 112132399 -105904759 + AluSp SINE Alu 1 310 -3 12520 155 32 7 chr3 112132399 112132966 -105904192 + L1PB1 LINE L1 2815 3366 -3501 4688 74 46 6 chr3 112132966 112133601 -105903557 - PABL_A LTR ERV1 0 660 1 12520 155 32 7 chr3 112133601 112134340 -105902818 + L1PB1 LINE L1 3366 4085 -2782 197 83 28 0 chr3 112134340 112134376 -105902782 + (CAA)n Simple_repeat Simple_repeat 2 38 0 12520 155 32 7 chr3 112134376 112136808 -105900350 + L1PB1 LINE L1 4085 6867 0 1355 195 4 4 chr3 112136912 112137179 -105899979 - L1MC1 LINE L1 0 6333 6067 279 234 0 0 chr3 112138478 112138555 -105898603 + (TAG)n Simple_repeat Simple_repeat 2 78 0 402 252 76 17 chr3 112138594 112138713 -105898445 - MIR SINE MIR -5 257 132 222 360 85 54 chr3 112139003 112139261 -105897897 + L3b LINE CR1 1309 1574 -9 518 251 25 68 chr3 112140153 112140363 -105896795 + MIR SINE MIR 40 245 -17 325 302 87 17 chr3 112140589 112140761 -105896397 + MIR SINE MIR 24 207 -55 219 331 68 75 chr3 112141026 112141159 -105895999 - L2 LINE L2 -5 3267 3136 1492 181 6 56 chr3 112141211 112141532 -105895626 + AluJb SINE Alu 1 305 -7 320 362 35 43 chr3 112141787 112142041 -105895117 - L2 LINE L2 -445 2869 2618 484 293 5 74 chr3 112143432 112143647 -105893511 + MIR SINE MIR 63 262 0 558 342 50 54 chr3 112143686 112144280 -105892878 + L2 LINE L2 2381 2972 -342 27 49 0 0 chr3 112144521 112144562 -105892596 + AT_rich Low_complexity Low_complexity 1 41 0 442 291 29 40 chr3 112144620 112144795 -105892363 + MIR SINE MIR 47 219 -43 247 88 0 123 chr3 112146982 112147039 -105890119 - L2 LINE L2 0 3313 3264 206 225 0 0 chr3 112147306 112147346 -105889812 + CT-rich Low_complexity Low_complexity 2 41 0 232 384 67 18 chr3 112147725 112147889 -105889269 - L2 LINE L2 -1 3271 3100 268 316 46 53 chr3 112148173 112148325 -105888833 - MIR SINE MIR -38 224 74 2747 165 6 2 chr3 112148938 112149428 -105887730 - L1PB3 LINE L1 0 6154 5663 23 33 0 0 chr3 112150253 112150283 -105886875 + AT_rich Low_complexity Low_complexity 1 30 0 266 314 105 16 chr3 112151186 112151310 -105885848 + MIR SINE MIR 91 225 -37 316 136 91 0 chr3 112151346 112151412 -105885746 - MIR SINE MIR -57 205 134 238 311 0 40 chr3 112152052 112152126 -105885032 - MIR SINE MIR -184 78 8 223 239 0 0 chr3 112152152 112152198 -105884960 - MIR SINE MIR -107 155 110 25 0 0 0 chr3 112152845 112152870 -105884288 + AT_rich Low_complexity Low_complexity 1 25 0 470 304 22 7 chr3 112153196 112153331 -105883827 + MIR3 SINE MIR 31 167 -41 1282 137 7 82 chr3 112153452 112153744 -105883414 - L1MA6 LINE L1 -15 6285 6016 26 64 0 0 chr3 112153958 112154005 -105883153 + AT_rich Low_complexity Low_complexity 1 47 0 27 62 0 0 chr3 112155093 112155141 -105882017 + AT_rich Low_complexity Low_complexity 1 48 0 21 57 0 0 chr3 112155555 112155590 -105881568 + AT_rich Low_complexity Low_complexity 1 35 0 3262 187 58 49 chr3 112157189 112158039 -105879119 - L1MC3 LINE L1 0 7785 6929 187 250 0 0 chr3 112158069 112158105 -105879053 + L2 LINE L2 3210 3245 -27 848 294 115 29 chr3 112158303 112158780 -105878378 - MLT1H LTR MaLR -29 520 3 489 208 62 23 chr3 112159649 112159779 -105877379 + MIR SINE MIR 104 238 -24 23 33 0 0 chr3 112161630 112161660 -105875498 + AT_rich Low_complexity Low_complexity 1 30 0 203 268 167 38 chr3 112162100 112162240 -105874918 + MIR3 SINE MIR 49 202 -18 407 252 41 34 chr3 112162635 112162782 -105874376 - MLT1K LTR MaLR -3 585 438 460 113 0 0 chr3 112162811 112162873 -105874285 - THE1B LTR MaLR 0 355 294 1128 29 0 0 chr3 112162873 112163012 -105874146 - AluY SINE Alu 0 311 173 1922 105 23 36 chr3 112163013 112163319 -105873839 - THE1B LTR MaLR -62 302 1 2119 82 54 0 chr3 112163428 112163708 -105873450 - AluY SINE Alu -3 308 14 559 330 32 60 chr3 112163730 112164012 -105873146 - MLT1K LTR MaLR -313 275 2 399 254 87 32 chr3 112164062 112164188 -105872970 - L2 LINE L2 -3 3310 3178 740 203 54 0 chr3 112165829 112165977 -105871181 + FRAM SINE Alu 2 157 -19 355 106 30 0 chr3 112165978 112166044 -105871114 + GA-rich Low_complexity Low_complexity 2 69 0 186 133 0 0 chr3 112166967 112166997 -105870161 + (TTG)n Simple_repeat Simple_repeat 1 30 0 321 311 43 30 chr3 112168946 112169110 -105868048 + MARNA DNA Mariner 64 229 -357 2471 66 0 0 chr3 112169594 112169898 -105867260 + AluY SINE Alu 1 304 -7 1289 198 50 18 chr3 112169942 112170220 -105866938 - AluJo SINE Alu -25 287 1 2008 153 24 16 chr3 112171279 112171651 -105865507 - THE1C LTR MaLR 0 375 1 5620 152 22 14 chr3 112172290 112173705 -105863453 + L1MA6 LINE L1 4366 5798 -502 369 0 0 0 chr3 112173705 112173746 -105863412 + (CA)n Simple_repeat Simple_repeat 2 42 0 5620 152 22 14 chr3 112173746 112174254 -105862904 + L1MA6 LINE L1 5798 6300 0 1513 153 3 49 chr3 112174522 112174809 -105862349 + AluJb SINE Alu 12 285 -27 672 234 0 0 chr3 112178213 112178341 -105858817 + FLAM_A SINE Alu 2 129 -4 344 130 22 36 chr3 112178343 112178485 -105858673 + GA-rich Low_complexity Low_complexity 1 139 0 540 283 85 36 chr3 112178485 112178930 -105858228 + L1M4 LINE L1 2154 2620 -3526 7227 114 3 0 chr3 112179187 112181027 -105856131 - L1PA8A LINE L1 -1 6130 4292 396 289 51 45 chr3 112181042 112181198 -105855960 - MIR SINE MIR -28 234 78 35 0 0 0 chr3 112181214 112181249 -105855909 + AT_rich Low_complexity Low_complexity 1 35 0 663 245 62 24 chr3 112181376 112181584 -105855574 - MLT1K LTR MaLR -2 586 371 258 211 88 0 chr3 112181691 112181748 -105855410 + L2 LINE L2 3231 3292 -21 2146 102 3 34 chr3 112181752 112182074 -105855084 - AluSx SINE Alu 0 312 1 2474 55 0 3 chr3 112182254 112182565 -105854593 + AluY SINE Alu 1 310 -1 1859 190 42 69 chr3 112182658 112182914 -105854244 + MER66B LTR ERV1 6 246 -240 1589 117 47 4 chr3 112182914 112183208 -105853950 + AluSx SINE Alu 14 318 0 1859 190 42 69 chr3 112183208 112183443 -105853715 + MER66B LTR ERV1 246 486 0 1112 118 4 0 chr3 112184255 112184408 -105852750 - L1PA13 LINE L1 -276 5892 5739 1745 68 56 0 chr3 112184408 112184659 -105852499 + L1PA13 LINE L1 5898 6163 0 1112 118 4 0 chr3 112184659 112184676 -105852482 - L1PA12 LINE L1 -429 5739 5724 263 267 117 78 chr3 112186620 112186800 -105850358 + L2 LINE L2 3123 3309 -4 266 106 21 0 chr3 112188092 112188139 -105849019 + (TG)n Simple_repeat Simple_repeat 2 49 0 731 315 64 21 chr3 112188170 112188497 -105848661 - MER102b DNA MER1_type 0 341 1 190 258 16 65 chr3 112188779 112188841 -105848317 - MIR SINE MIR -131 77 19 346 230 14 0 chr3 112188896 112188970 -105848188 - L2 LINE L2 0 3313 3239 22 0 0 0 chr3 112189532 112189554 -105847604 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr3 112191348 112191386 -105845772 + AT_rich Low_complexity Low_complexity 1 38 0 683 231 162 34 chr3 112191903 112192137 -105845021 - L1ME2 LINE L1 -2 6162 5899 181 423 9 18 chr3 112192367 112192478 -105844680 - L2 LINE L2 -2088 1226 1117 26 30 0 0 chr3 112193151 112193184 -105843974 + AT_rich Low_complexity Low_complexity 1 33 0 634 301 66 18 chr3 112194084 112194310 -105842848 + MIR SINE MIR 20 256 -6 713 243 88 90 chr3 112195894 112196549 -105840609 - L1ME LINE L1 -5152 918 265 308 244 22 78 chr3 112196566 112196656 -105840502 + L1ME LINE L1 101 185 -5885 290 226 97 11 chr3 112197007 112197100 -105840058 + MIR SINE MIR 100 200 -62 245 228 41 32 chr3 112197100 112197223 -105839935 + (TA)n Simple_repeat Simple_repeat 2 125 0 294 29 0 0 chr3 112197223 112197258 -105839900 + (CA)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr3 112197578 112197600 -105839558 + AT_rich Low_complexity Low_complexity 1 22 0 2480 154 25 20 chr3 112198758 112199245 -105837913 - L1MA8 LINE L1 -1 6290 5802 225 83 0 0 chr3 112199268 112199304 -105837854 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2327 101 0 0 chr3 112249497 112249794 -105787364 - AluSp SINE Alu -16 297 1 255 277 105 16 chr3 112249822 112250317 -105786841 - L1M4 LINE L1 -2702 3444 2894 1980 128 0 6 chr3 112250367 112250687 -105786471 - AluYb8 SINE Alu 0 318 1 1387 196 26 17 chr3 112251192 112251526 -105785632 + L1MD3 LINE L1 6673 7060 -935 1299 173 0 68 chr3 112251533 112251782 -105785376 + AluJo SINE Alu 47 278 -34 413 198 0 12 chr3 112251842 112251923 -105785235 - L1ME3A LINE L1 -179 5991 5912 1465 168 53 7 chr3 112253331 112253616 -105783542 + L1MB7 LINE L1 5874 6171 -13 22 0 0 0 chr3 112254481 112254503 -105782655 + AT_rich Low_complexity Low_complexity 1 22 0 630 129 32 19 chr3 112254845 112255000 -105782158 + GA-rich Low_complexity Low_complexity 4 160 0 287 297 9 45 chr3 112255062 112255173 -105781985 + MIR3 SINE MIR 100 206 -2 259 136 17 68 chr3 112255471 112255530 -105781628 - MER5A DNA MER1_type -83 106 51 23 0 0 0 chr3 112255856 112255879 -105781279 + AT_rich Low_complexity Low_complexity 1 23 0 215 133 22 0 chr3 112256750 112256795 -105780363 + (TG)n Simple_repeat Simple_repeat 1 46 0 8488 122 17 30 chr3 112256870 112258194 -105778964 - THE1C-int LTR MaLR -271 1309 3 2631 98 8 16 chr3 112258196 112258574 -105778584 - THE1C LTR MaLR 0 375 1 200 282 19 68 chr3 112259376 112259479 -105777679 + MIR3 SINE MIR 73 170 -38 219 119 24 24 chr3 112259542 112259584 -105777574 - MIR SINE MIR 0 262 221 1929 216 73 9 chr3 112259586 112260053 -105777105 + MLT1D LTR MaLR 3 499 -6 531 237 107 12 chr3 112260057 112260226 -105776932 - MIR SINE MIR -31 231 47 365 121 0 15 chr3 112260638 112260704 -105776454 + (TTCC)n Simple_repeat Simple_repeat 2 66 0 1669 200 3 7 chr3 112260801 112261185 -105775973 - AluJo SINE Alu 0 385 3 22 0 0 0 chr3 112262515 112262537 -105774621 + AT_rich Low_complexity Low_complexity 1 22 0 378 61 0 0 chr3 112263054 112263103 -105774055 + (TG)n Simple_repeat Simple_repeat 1 49 0 2452 65 0 0 chr3 112263978 112264272 -105772886 + AluY SINE Alu 3 296 -15 297 324 136 28 chr3 112264285 112264498 -105772660 - MIR SINE MIR -7 255 20 189 0 0 0 chr3 112264726 112264747 -105772411 + (TG)n Simple_repeat Simple_repeat 2 22 0 236 258 52 21 chr3 112266483 112266580 -105770578 + CT-rich Low_complexity Low_complexity 3 102 0 255 289 13 13 chr3 112266937 112267013 -105770145 + MIR3 SINE MIR 102 177 -31 23 0 0 0 chr3 112267760 112267783 -105769375 + AT_rich Low_complexity Low_complexity 1 23 0 217 317 99 10 chr3 112270237 112270338 -105766820 - MIR SINE MIR -1 261 152 3645 107 74 72 chr3 112270338 112271121 -105766037 - LTR1 LTR ERV1 0 785 1 419 301 26 13 chr3 112271168 112271321 -105765837 - MIR SINE MIR -106 156 2 1891 159 138 5 chr3 112271393 112271771 -105765387 - MSTA LTR MaLR 0 428 1 30 0 0 0 chr3 112271871 112271901 -105765257 + AT_rich Low_complexity Low_complexity 1 30 0 3451 139 41 28 chr3 112273317 112273993 -105763165 - L1MC2 LINE L1 -9 6335 5651 260 311 47 27 chr3 112274519 112274667 -105762491 + MIR SINE MIR 4 154 -108 5320 165 22 22 chr3 112274835 112276128 -105761030 - L1MA9 LINE L1 -38 6274 4974 753 312 68 27 chr3 112276275 112276717 -105760441 - LTR16B LTR ERVL -2 462 3 220 300 73 55 chr3 112280390 112280500 -105756658 + L2 LINE L2 3202 3313 0 203 156 0 0 chr3 112281278 112281310 -105755848 + (CA)n Simple_repeat Simple_repeat 1 32 0 870 193 68 16 chr3 112281772 112281964 -105755194 + MER20 DNA MER1_type 18 219 0 196 344 65 11 chr3 112284098 112284191 -105752967 - L2 LINE L2 -20 3293 3196 28 61 0 0 chr3 112285519 112285568 -105751590 + AT_rich Low_complexity Low_complexity 1 49 0 26 50 0 0 chr3 112285692 112285732 -105751426 + AT_rich Low_complexity Low_complexity 1 40 0 221 186 23 0 chr3 112286242 112286285 -105750873 + CT-rich Low_complexity Low_complexity 1 44 0 2872 3 0 0 chr3 112287246 112287559 -105749599 + AluYb8 SINE Alu 1 313 -5 276 252 58 10 chr3 112287560 112287663 -105749495 + MER103 DNA DNA 59 166 0 406 323 95 37 chr3 112287767 112287956 -105749202 + MIR SINE MIR 49 248 -14 183 42 0 0 chr3 112288012 112288036 -105749122 + (GGAAA)n Simple_repeat Simple_repeat 1 24 0 446 293 34 75 chr3 112288903 112289084 -105748074 + MIR SINE MIR 34 204 -58 2579 45 0 3 chr3 112289084 112289396 -105747762 + AluY SINE Alu 1 311 0 446 293 34 75 chr3 112289396 112289453 -105747705 + MIR SINE MIR 204 262 0 21 36 0 0 chr3 112290200 112290228 -105746930 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 112290486 112290514 -105746644 + AT_rich Low_complexity Low_complexity 1 28 0 219 226 0 32 chr3 112291063 112291125 -105746033 + (TA)n Simple_repeat Simple_repeat 2 61 0 284 171 34 34 chr3 112291216 112291304 -105745854 + (TA)n Simple_repeat Simple_repeat 2 89 0 191 32 65 0 chr3 112292925 112292956 -105744202 + T-rich Low_complexity Low_complexity 2 34 0 348 256 102 51 chr3 112293539 112293715 -105743443 + MIR3 SINE MIR 19 203 -5 2124 88 7 0 chr3 112294820 112295114 -105742044 + L1PA13 LINE L1 5856 6151 -12 198 167 0 0 chr3 112295215 112295251 -105741907 + (CA)n Simple_repeat Simple_repeat 2 37 0 450 312 19 26 chr3 112297681 112297835 -105739323 - MER5A DNA MER1_type 0 189 37 21 36 0 0 chr3 112298028 112298056 -105739102 + AT_rich Low_complexity Low_complexity 1 28 0 1239 219 48 22 chr3 112298572 112298842 -105738316 + AluJb SINE Alu 13 289 -23 194 375 81 49 chr3 112298858 112299205 -105737953 - L2 LINE L2 -262 3010 2646 3063 156 60 0 chr3 112299996 112300495 -105736663 - MER1A DNA MER1_type 0 529 1 223 286 48 0 chr3 112301532 112301595 -105735563 - MIR3 SINE MIR -31 177 112 458 307 145 0 chr3 112301672 112301838 -105735320 + MIR SINE MIR 2 191 -71 2173 135 0 0 chr3 112302309 112302620 -105734538 - AluSx SINE Alu -1 311 1 851 245 5 0 chr3 112303061 112303249 -105733909 - MER5A DNA MER1_type 0 189 1 204 357 122 24 chr3 112303472 112303685 -105733473 + L2 LINE L2 2544 2777 -537 203 310 190 20 chr3 112303823 112303923 -105733235 + L2 LINE L2 2932 3048 -224 21 0 0 0 chr3 112305856 112305877 -105731281 + AT_rich Low_complexity Low_complexity 1 21 0 352 168 19 45 chr3 112307330 112307485 -105729673 + CT-rich Low_complexity Low_complexity 2 152 0 430 198 132 25 chr3 112310130 112310251 -105726907 - L2 LINE L2 -1 3312 3179 227 210 32 16 chr3 112310676 112310738 -105726420 - L2 LINE L2 -1 3312 3250 216 273 30 15 chr3 112310796 112310862 -105726296 + L2 LINE L2 3235 3301 -12 299 290 153 30 chr3 112311903 112312034 -105725124 - MIR SINE MIR -70 192 46 198 299 15 15 chr3 112312156 112312223 -105724935 + L2 LINE L2 3244 3310 -3 188 270 11 34 chr3 112315559 112315648 -105721510 - L2 LINE L2 -76 3237 3151 27 29 0 0 chr3 112315977 112316011 -105721147 + AT_rich Low_complexity Low_complexity 1 34 0 188 385 29 10 chr3 112317636 112317740 -105719418 + MER5A DNA MER1_type 68 173 -16 240 234 28 75 chr3 112319525 112319632 -105717526 + MER5A DNA MER1_type 81 182 -7 640 323 15 5 chr3 112319920 112320118 -105717040 - MIR SINE MIR -60 202 3 1960 213 27 49 chr3 112320284 112320810 -105716348 - MLT2B1 LTR ERVL -6 514 1 22 0 0 0 chr3 112321956 112321978 -105715180 + AT_rich Low_complexity Low_complexity 1 22 0 261 229 167 10 chr3 112323154 112323250 -105713908 - MIR SINE MIR -77 185 75 298 322 63 11 chr3 112325033 112325207 -105711951 - MIR SINE MIR -51 211 29 23 68 0 0 chr3 112325337 112325381 -105711777 + AT_rich Low_complexity Low_complexity 1 44 0 698 146 41 0 chr3 112325386 112325557 -105711601 + (TA)n Simple_repeat Simple_repeat 2 179 0 1472 197 18 23 chr3 112325557 112325870 -105711288 - MLT1A1 LTR MaLR -17 348 1 2503 231 64 30 chr3 112325870 112327058 -105710100 - L1ME2 LINE L1 -91 6142 4912 1599 246 68 22 chr3 112327059 112327737 -105709421 - L1ME2 LINE L1 -1421 4794 4086 1170 286 84 33 chr3 112327872 112328496 -105708662 - MER77 LTR ERV1 -1 604 53 1846 262 92 31 chr3 112328523 112329035 -105708123 - L1ME2 LINE L1 -2143 4072 3593 2297 101 0 0 chr3 112329035 112329332 -105707826 - AluSp SINE Alu -16 297 1 1846 262 92 31 chr3 112329332 112329754 -105707404 - L1ME2 LINE L1 -2622 3593 3081 2893 6 0 0 chr3 112329895 112330213 -105706945 - AluYb8 SINE Alu 0 318 1 452 262 32 54 chr3 112330214 112330435 -105706723 - L1ME2 LINE L1 -3327 2888 2673 629 277 65 20 chr3 112330447 112330931 -105706227 - L1ME2 LINE L1 -4371 2025 1474 841 182 0 59 chr3 112330943 112330991 -105706167 + FRAM SINE Alu 1 50 -252 1666 165 61 0 chr3 112330991 112331270 -105705888 + AluSx SINE Alu 1 296 -16 841 182 0 59 chr3 112331270 112331391 -105705767 + FRAM SINE Alu 50 160 -6 674 258 176 31 chr3 112331395 112331995 -105705163 - L1ME2 LINE L1 -5012 1326 671 250 352 39 28 chr3 112332138 112332320 -105704838 - L1ME2 LINE L1 -6091 305 122 424 228 0 0 chr3 112332375 112332454 -105704704 - MER2 DNA MER2_type -266 79 1 695 234 78 0 chr3 112332497 112332689 -105704469 - L1ME LINE L1 -3566 2514 2308 1075 268 106 66 chr3 112332706 112334167 -105702991 - L1ME LINE L1 -4173 2088 520 1990 93 0 96 chr3 112334253 112334617 -105702541 - AluSx SINE Alu 0 334 1 339 257 38 89 chr3 112334682 112334919 -105702239 - L1ME LINE L1 -5526 544 320 321 311 11 0 chr3 112334984 112335074 -105702084 - L1ME LINE L1 -5921 149 59 24 0 0 0 chr3 112335296 112335320 -105701838 + AT_rich Low_complexity Low_complexity 1 24 0 324 302 16 23 chr3 112335429 112335558 -105701600 + GA-rich Low_complexity Low_complexity 2 129 0 294 345 52 9 chr3 112335873 112335989 -105701169 - L2 LINE L2 -12 3301 3181 475 324 45 33 chr3 112336597 112336841 -105700317 + L1ME LINE L1 842 1088 -4982 760 234 34 26 chr3 112336853 112337118 -105700040 + L1ME3A LINE L1 5744 6010 -160 221 150 0 25 chr3 112337157 112337197 -105699961 + (GGGA)n Simple_repeat Simple_repeat 1 39 0 858 185 16 32 chr3 112337339 112337528 -105699630 - MER5A DNA MER1_type 0 189 4 4823 82 6 0 chr3 112338314 112338963 -105698195 - L1PA7 LINE L1 0 6154 5502 26 64 0 0 chr3 112339218 112339265 -105697893 + AT_rich Low_complexity Low_complexity 1 47 0 1984 149 0 19 chr3 112339265 112339580 -105697578 + AluSx SINE Alu 1 309 -3 186 133 0 0 chr3 112339706 112339736 -105697422 + (TATATG)n Simple_repeat Simple_repeat 2 31 0 285 287 159 20 chr3 112343547 112343742 -105693416 - MIR SINE MIR -6 256 35 329 129 14 0 chr3 112344879 112344949 -105692209 + (CA)n Simple_repeat Simple_repeat 1 71 0 1417 170 78 33 chr3 112345324 112345595 -105691563 + AluJb SINE Alu 1 283 -29 892 263 87 64 chr3 112347428 112347957 -105689201 + MLT1H LTR MaLR 9 549 0 323 296 56 43 chr3 112349003 112349165 -105687993 + MIR SINE MIR 27 190 -72 1465 214 0 21 chr3 112349187 112349472 -105687686 + AluJo SINE Alu 1 279 -33 2163 148 20 8 chr3 112349473 112349831 -105687327 + THE1B LTR MaLR 3 364 0 814 276 85 24 chr3 112350272 112350685 -105686473 + LTR1B LTR ERV1 61 498 -328 239 240 41 83 chr3 112350787 112350908 -105686250 + LTR28 LTR ERV1 905 1020 0 21 0 0 0 chr3 112351134 112351155 -105686003 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chr3 112352795 112352836 -105684322 + (TG)n Simple_repeat Simple_repeat 2 42 0 2084 106 3 62 chr3 112352850 112353172 -105683986 - AluSx SINE Alu -9 303 1 12496 18 0 0 chr3 112353566 112355868 -105681290 - L1HS LINE L1 0 6155 3853 * 20293 29 0 0 chr3 112355862 112358414 -105678744 + L1P LINE L1 1336 3887 -2259 2505 65 0 0 chr3 112358514 112358823 -105678335 + AluY SINE Alu 1 309 -2 207 235 39 0 chr3 112358862 112358913 -105678245 + GA-rich Low_complexity Low_complexity 4 56 0 231 294 71 40 chr3 112359026 112359152 -105678006 + HsTC2 DNA Tc2 1 130 -1768 1224 246 122 21 chr3 112359178 112359595 -105677563 + HsTC2 DNA Tc2 1274 1764 -134 4136 155 67 8 chr3 112359595 112360375 -105676783 - LTR1B LTR ERV1 0 826 1 1224 246 122 21 chr3 112360375 112360525 -105676633 + HsTC2 DNA Tc2 1764 1898 0 2181 174 16 21 chr3 112360594 112360642 -105676516 - Tigger2a DNA MER2_type -2274 434 387 5132 140 29 20 chr3 112360642 112361535 -105675623 - MER4D LTR ERV1 -2 901 1 2181 174 16 21 chr3 112361535 112361922 -105675236 - Tigger2a DNA MER2_type -2321 387 1 310 284 135 12 chr3 112361984 112362163 -105674995 + MIR SINE MIR 62 262 0 581 249 62 92 chr3 112362581 112363174 -105673984 - L1MC4 LINE L1 -733 7228 6661 258 261 35 0 chr3 112363475 112363590 -105673568 + T-rich Low_complexity Low_complexity 6 124 0 393 106 0 0 chr3 112363735 112363801 -105673357 + L1PA14 LINE L1 6096 6161 0 360 267 0 0 chr3 112363856 112363976 -105673182 + (TA)n Simple_repeat Simple_repeat 1 120 0 631 239 12 73 chr3 112363976 112364170 -105672988 - L1MC4 LINE L1 -1846 5962 5785 1817 225 37 90 chr3 112364170 112364900 -105672258 - LTR8 LTR ERV1 0 691 1 631 239 12 73 chr3 112364900 112364952 -105672206 - L1MC4 LINE L1 -2023 5785 5731 1727 199 55 10 chr3 112364958 112365376 -105671782 + LTR56 LTR ERV1 9 445 0 2786 179 46 4 chr3 112365396 112365957 -105671201 - LTR29 LTR ERV1 0 622 38 1820 223 130 28 chr3 112365957 112366611 -105670547 - MER50 LTR ERV1 0 734 14 267 125 0 0 chr3 112366616 112366656 -105670502 - LTR29 LTR ERV1 -581 41 2 485 267 29 68 chr3 112366664 112366790 -105670368 - L1MC4 LINE L1 -2076 5732 5616 1935 104 41 7 chr3 112366790 112367060 -105670098 + AluSg SINE Alu 12 290 -20 485 267 29 68 chr3 112367060 112367139 -105670019 - L1MC4 LINE L1 -2192 5616 5535 650 212 0 7 chr3 112367139 112367285 -105669873 - MER34C LTR ERV1 0 585 441 3246 66 11 31 chr3 112367287 112367332 -105669826 - MLT2A1 LTR ERVL 0 444 400 288 0 0 0 chr3 112367332 112367364 -105669794 + (CA)n Simple_repeat Simple_repeat 2 33 0 3246 66 11 31 chr3 112367364 112367771 -105669387 - MLT2A1 LTR ERVL -44 400 1 4361 54 9 2 chr3 112367771 112368342 -105668816 - HERVL-A1 LTR ERVL 0 5654 5080 * 5412 75 0 1 chr3 112368331 112369060 -105668098 - HERVL-A1 LTR ERVL -756 4898 4171 * 24027 78 7 12 chr3 112369059 112370662 -105666496 - HERVL-A1 LTR ERVL -2341 3313 1702 2408 78 0 3 chr3 112370662 112370968 -105666190 - AluY SINE Alu -6 305 1 24027 78 7 12 chr3 112370968 112372696 -105664462 - HERVL-A1 LTR ERVL -3952 1702 1 259 113 0 6 chr3 112372696 112372736 -105664422 - MLT2A1 LTR ERVL 0 453 404 315 0 0 0 chr3 112372736 112372771 -105664387 + (CA)n Simple_repeat Simple_repeat 2 36 0 259 113 0 6 chr3 112372771 112372792 -105664366 - MLT2A1 LTR ERVL -49 404 384 2157 140 3 0 chr3 112372855 112373163 -105663995 - AluSx SINE Alu -3 309 1 341 119 0 0 chr3 112373234 112373293 -105663865 + MLT2C2 LTR ERVL 1 59 -405 342 253 0 0 chr3 112373293 112373392 -105663766 + (TA)n Simple_repeat Simple_repeat 2 100 0 2680 93 0 31 chr3 112373392 112373809 -105663349 - MLT2A1 LTR ERVL -40 404 1 1893 176 31 8 chr3 112373816 112374208 -105662950 - MER34C LTR ERV1 -148 437 37 272 229 128 78 chr3 112374208 112374466 -105662692 - L1MC4 LINE L1 -2270 5538 5268 233 23 0 139 chr3 112374485 112374528 -105662630 - MLT2C2 LTR ERVL -12 508 472 312 327 20 0 chr3 112374531 112374632 -105662526 + L1MC4 LINE L1 6616 6718 -1324 308 281 0 11 chr3 112374553 112374642 -105662516 - L1MC4 LINE L1 -1339 6703 6616 * 435 268 140 31 chr3 112374659 112375067 -105662091 + LTR28 LTR ERV1 28 558 -291 291 93 0 0 chr3 112375311 112375354 -105661804 + (TG)n Simple_repeat Simple_repeat 2 44 0 245 119 0 24 chr3 112375356 112375398 -105661760 - MER34C LTR ERV1 -116 469 429 1637 188 45 32 chr3 112375415 112375793 -105661365 - MLT2C2 LTR ERVL -81 383 1 2211 120 7 0 chr3 112375864 112376173 -105660985 + AluSx SINE Alu 1 311 -1 21 36 0 0 chr3 112376304 112376332 -105660826 + AT_rich Low_complexity Low_complexity 1 28 0 2081 139 0 0 chr3 112376975 112377270 -105659888 - AluSx SINE Alu -17 295 1 1534 182 47 109 chr3 112377689 112378437 -105658721 - LTR8A LTR ERV1 -1 726 1 26 64 0 0 chr3 112378567 112378614 -105658544 + AT_rich Low_complexity Low_complexity 1 47 0 288 252 139 9 chr3 112380071 112380186 -105656972 - MIR SINE MIR -16 246 117 530 273 91 34 chr3 112380932 112381108 -105656050 - MIR SINE MIR -75 187 2 238 280 0 0 chr3 112381172 112381247 -105655911 + GA-rich Low_complexity Low_complexity 3 77 0 215 292 0 0 chr3 112381266 112381331 -105655827 - MIR SINE MIR -44 218 154 249 33 0 0 chr3 112381382 112381412 -105655746 + (GA)n Simple_repeat Simple_repeat 2 31 0 236 313 134 30 chr3 112382956 112383090 -105654068 - L2 LINE L2 -9 3263 3116 2934 161 18 63 chr3 112383491 112383909 -105653249 - L1MC2 LINE L1 -13 6331 5895 2360 86 7 7 chr3 112383909 112384210 -105652948 + AluSc SINE Alu 1 301 -8 2934 161 18 63 chr3 112384210 112384299 -105652859 - L1MC2 LINE L1 -449 5895 5803 2138 136 0 0 chr3 112384299 112384601 -105652557 + AluSx SINE Alu 1 302 -10 2934 161 18 63 chr3 112384601 112384769 -105652389 - L1MC2 LINE L1 -541 5803 5686 686 276 113 33 chr3 112384770 112385220 -105651938 + MLT1H LTR MaLR 57 542 -7 1778 187 0 3 chr3 112385774 112386073 -105651085 - AluJo SINE Alu -14 298 1 559 274 109 46 chr3 112386429 112386758 -105650400 + L2 LINE L2 2949 3298 -15 732 240 61 123 chr3 112387161 112387706 -105649452 + MLT1J LTR MaLR 1 511 0 187 264 47 56 chr3 112387760 112387931 -105649227 + MIR SINE MIR 40 207 -55 21 0 0 0 chr3 112388802 112388823 -105648335 + AT_rich Low_complexity Low_complexity 1 21 0 949 177 0 0 chr3 112388828 112388986 -105648172 - AluJb SINE Alu -36 276 119 712 307 10 0 chr3 112389026 112389228 -105647930 + MLT1I LTR MaLR 200 403 -6 307 349 11 42 chr3 112389592 112389781 -105647377 + L1MC4 LINE L1 6520 6702 -1340 * 333 303 0 0 chr3 112389702 112389791 -105647367 - L1MC4 LINE L1 -1339 6703 6615 232 278 0 0 chr3 112389802 112389892 -105647266 - L1MC4 LINE L1 -1339 6703 6614 324 241 72 0 chr3 112389914 112389997 -105647161 - L1MC4 LINE L1 -1339 6703 6615 309 197 0 0 chr3 112390001 112390067 -105647091 + (TA)n Simple_repeat Simple_repeat 1 66 0 341 300 0 0 chr3 112390068 112390158 -105647000 - L1MC4 LINE L1 -1339 6703 6614 180 111 0 0 chr3 112390158 112390185 -105646973 + (CATATA)n Simple_repeat Simple_repeat 4 30 0 714 253 0 12 chr3 112390185 112390355 -105646803 - AluJb SINE Alu -29 283 116 7529 27 5 0 chr3 112391059 112392163 -105644995 + L1PA4 LINE L1 5044 6151 -4 2147 88 17 0 chr3 112392391 112392685 -105644473 - AluSx SINE Alu -13 299 1 2719 330 66 23 chr3 112393005 112394262 -105642896 - ERVL LTR ERVL -2070 3694 2299 1867 178 44 65 chr3 112394262 112394739 -105642419 - MLT1C LTR MaLR 0 467 1 2719 330 66 23 chr3 112394739 112395201 -105641957 - ERVL LTR ERVL -3465 2299 1859 1577 194 39 9 chr3 112395488 112395818 -105641340 - MLT2C1 LTR ERVL -48 349 10 407 321 21 49 chr3 112395855 112396142 -105641016 - ERVL LTR ERVL -3618 1479 1086 448 167 14 29 chr3 112396800 112396938 -105640220 + CT-rich Low_complexity Low_complexity 4 139 0 786 262 0 0 chr3 112397735 112397903 -105639255 + FAM SINE Alu 1 168 -7 498 288 48 0 chr3 112398430 112398576 -105638582 + MER63A DNA MER1_type 58 210 0 278 272 61 75 chr3 112398923 112399070 -105638088 + L2 LINE L2 3169 3313 0 244 370 60 0 chr3 112400134 112400234 -105636924 + L3 LINE CR1 1464 1569 -8 211 147 0 0 chr3 112400378 112400412 -105636746 - MIR3 SINE MIR -53 155 122 210 358 12 37 chr3 112400449 112400530 -105636628 - MIR SINE MIR -90 118 40 503 282 199 9 chr3 112401332 112401548 -105635610 + MIR SINE MIR 6 262 0 299 241 9 28 chr3 112401650 112401758 -105635400 + (TA)n Simple_repeat Simple_repeat 1 106 0 3277 273 32 36 chr3 112401825 112402882 -105634276 - L2 LINE L2 -1736 1578 526 231 337 70 0 chr3 112403702 112403874 -105633284 - L1M4 LINE L1 -1086 5296 5113 227 125 50 0 chr3 112404013 112404053 -105633105 - L1M2 LINE L1 -4284 2565 2524 300 297 76 35 chr3 112404174 112404319 -105632839 - L1MEc LINE L1 -4905 1312 1162 249 33 0 0 chr3 112404335 112404365 -105632793 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 962 41 0 8 chr3 112404365 112404481 -105632677 - L1PA3 LINE L1 -6 6149 6035 464 47 47 0 chr3 112404481 112404545 -105632613 + L1HS LINE L1 5974 6040 -115 1807 136 3 50 chr3 112404564 112404881 -105632277 - AluSx SINE Alu -10 302 1 254 175 27 49 chr3 112405011 112405194 -105631964 + (TA)n Simple_repeat Simple_repeat 2 180 0 860 288 147 33 chr3 112405228 112406081 -105631077 - L1MEc LINE L1 -5216 1180 231 247 302 16 48 chr3 112406374 112406563 -105630595 - L1MEd LINE L1 -4862 1257 1075 2120 123 50 31 chr3 112406832 112407189 -105629969 - THE1B LTR MaLR 0 364 1 11449 99 8 1 chr3 112407189 112408759 -105628399 - THE1B-int LTR MaLR 0 1580 1 1905 143 56 34 chr3 112408759 112409115 -105628043 - THE1B LTR MaLR 0 364 1 723 334 30 30 chr3 112409326 112409760 -105627398 - L1MEd LINE L1 -5650 469 36 2176 85 26 29 chr3 112411356 112411662 -105625496 + AluSg SINE Alu 1 305 -5 387 293 62 70 chr3 112412286 112412371 -105624787 + L1ME3 LINE L1 2038 2122 -4274 1948 128 3 7 chr3 112412371 112412680 -105624478 + AluSq SINE Alu 11 313 0 387 293 62 70 chr3 112412680 112412867 -105624291 + L1ME3 LINE L1 2122 2308 -4088 426 175 0 0 chr3 112412889 112412969 -105624189 + (CATATA)n Simple_repeat Simple_repeat 2 81 0 363 318 78 0 chr3 112413087 112413241 -105623917 + L1ME3 LINE L1 2454 2619 -3596 823 205 7 0 chr3 112413371 112413522 -105623636 + AluJb SINE Alu 147 298 -14 700 233 55 13 chr3 112413546 112413782 -105623376 + L1ME3 LINE L1 2707 2952 -3263 1175 261 67 13 chr3 112413795 112414167 -105622991 + L1ME3 LINE L1 5720 6111 -120 876 162 7 0 chr3 112414266 112414414 -105622744 + MLT1B LTR MaLR 1 149 -241 915 170 0 0 chr3 112414414 112414561 -105622597 + FRAM SINE Alu 1 139 -37 983 219 0 0 chr3 112414611 112414807 -105622351 + MLT1B LTR MaLR 193 388 -2 375 285 166 10 chr3 112414826 112415019 -105622139 - MIR SINE MIR -37 225 3 192 273 76 0 chr3 112416139 112416205 -105620953 - MIR SINE MIR -98 164 94 243 0 0 0 chr3 112416675 112416702 -105620456 + (TAGA)n Simple_repeat Simple_repeat 2 28 0 1271 204 21 36 chr3 112416702 112416982 -105620176 - AluJo SINE Alu -36 276 1 2418 109 25 5 chr3 112418369 112418737 -105618421 - THE1C LTR MaLR 0 375 1 206 203 257 0 chr3 112421015 112421089 -105616069 + MIR SINE MIR 168 260 -2 259 211 39 0 chr3 112423830 112423882 -105613276 + L2 LINE L2 3250 3303 -10 215 286 66 22 chr3 112425565 112425656 -105611502 - MIR SINE MIR -55 207 113 2069 113 0 24 chr3 112426427 112426718 -105610440 - AluSq SINE Alu -29 284 1 869 147 0 22 chr3 112427193 112427329 -105609829 - FLAM_C SINE Alu 0 133 1 479 138 0 58 chr3 112429085 112429172 -105607986 - LTR3b LTR ERVK 0 500 419 545 97 0 0 chr3 112429174 112429246 -105607912 - LTR3b LTR ERVK -10 490 419 393 154 0 0 chr3 112429248 112429313 -105607845 - LTR3b LTR ERVK -10 490 426 453 95 40 27 chr3 112429315 112429389 -105607769 - LTR3b LTR ERVK -2 498 424 3351 100 49 0 chr3 112429397 112429866 -105607292 - LTR3b LTR ERVK -8 492 1 476 146 24 188 chr3 112429962 112430175 -105606983 + MER106A DNA MER1_type 35 212 -24 433 296 136 29 chr3 112430542 112430850 -105606308 + L1ME4a LINE L1 5778 6118 -3 184 296 84 0 chr3 112431276 112431347 -105605811 + MIR SINE MIR 90 166 -96 1879 130 68 10 chr3 112431347 112431640 -105605518 + AluSx SINE Alu 1 310 -2 354 194 0 0 chr3 112431643 112431715 -105605443 + (TA)n Simple_repeat Simple_repeat 2 73 0 271 241 41 12 chr3 112431770 112431940 -105605218 + (TA)n Simple_repeat Simple_repeat 2 176 0 2245 97 14 0 chr3 112431975 112432265 -105604893 + AluSg SINE Alu 1 294 -16 2243 106 0 0 chr3 112432632 112432925 -105604233 + AluSg SINE Alu 1 293 -17 608 273 56 70 chr3 112435278 112435292 -105601866 - L2 LINE L2 0 3313 3300 360 0 0 0 chr3 112435292 112435332 -105601826 + (TCCA)n Simple_repeat Simple_repeat 2 41 0 608 273 56 70 chr3 112435332 112435393 -105601765 - L2 LINE L2 -13 3300 3240 1896 167 33 17 chr3 112435393 112435752 -105601406 + MLT1A1 LTR MaLR 1 365 0 608 273 56 70 chr3 112435752 112435961 -105601197 - L2 LINE L2 -73 3240 3032 217 214 163 31 chr3 112436995 112437093 -105600065 + MIR SINE MIR 96 206 -56 212 75 0 25 chr3 112439214 112439254 -105597904 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1900 144 10 3 chr3 112439294 112439593 -105597565 - AluSx SINE Alu -11 301 1 22 0 0 0 chr3 112439672 112439694 -105597464 + AT_rich Low_complexity Low_complexity 1 22 0 673 294 156 15 chr3 112439870 112440197 -105596961 - L3 LINE CR1 -86 1491 1119 725 238 131 6 chr3 112440199 112440367 -105596791 - MER5A DNA MER1_type 0 189 1 533 286 99 34 chr3 112440401 112440663 -105596495 - L3 LINE CR1 -515 1062 784 394 308 22 108 chr3 112440767 112440952 -105596206 + MER91A DNA MER1_type 28 196 0 2105 141 0 3 chr3 112441828 112442132 -105595026 + AluSx SINE Alu 1 303 -9 1649 131 74 52 chr3 112442937 112443304 -105593854 + THE1C LTR MaLR 1 375 0 53 63 0 0 chr3 112443979 112444074 -105593084 + AT_rich Low_complexity Low_complexity 1 95 0 203 224 17 52 chr3 112444364 112444422 -105592736 + MIR3 SINE MIR 113 168 -40 203 136 45 0 chr3 112444984 112445028 -105592130 + (CATA)n Simple_repeat Simple_repeat 4 49 0 225 0 0 0 chr3 112445563 112445588 -105591570 + (A)n Simple_repeat Simple_repeat 1 25 0 2016 117 10 3 chr3 112445722 112446012 -105591146 + AluSc SINE Alu 1 292 -17 225 211 0 39 chr3 112446645 112446697 -105590461 - MER3 DNA MER1_type -158 51 2 1618 146 23 8 chr3 112448768 112449029 -105588129 - AluSx SINE Alu -47 265 1 2417 71 0 0 chr3 112450781 112451077 -105586081 - AluSg SINE Alu -14 296 1 898 266 39 14 chr3 112455147 112455433 -105581725 + L2 LINE L2 2935 3227 -86 24 53 0 0 chr3 112455544 112455582 -105581576 + AT_rich Low_complexity Low_complexity 1 38 0 35 63 0 0 chr3 112455893 112455956 -105581202 + AT_rich Low_complexity Low_complexity 1 63 0 290 303 66 46 chr3 112456649 112456768 -105580390 - MIR3 SINE MIR -5 203 79 2328 92 0 0 chr3 112456768 112457072 -105580086 + AluSg SINE Alu 1 304 -6 290 303 66 46 chr3 112457072 112457104 -105580054 - MIR3 SINE MIR -129 79 49 353 198 12 0 chr3 112462256 112462337 -105574821 + (TA)n Simple_repeat Simple_repeat 1 82 0 189 0 0 0 chr3 112464832 112464853 -105572305 + (A)n Simple_repeat Simple_repeat 1 21 0 184 302 65 101 chr3 112465620 112465759 -105571399 - MIR SINE MIR -102 160 27 2337 87 0 0 chr3 112467707 112468005 -105569153 + AluSq SINE Alu 1 298 -15 225 132 0 0 chr3 112468688 112468726 -105568432 + (A)n Simple_repeat Simple_repeat 1 38 0 22 0 0 0 chr3 112469586 112469608 -105567550 + AT_rich Low_complexity Low_complexity 1 22 0 2537 205 6 2 chr3 112471554 112472046 -105565112 - L1MC3 LINE L1 -169 7616 7123 1583 189 3 22 chr3 112472080 112472392 -105564766 + AluJo SINE Alu 1 306 -6 22 0 0 0 chr3 112475066 112475088 -105562070 + AT_rich Low_complexity Low_complexity 1 22 0 271 287 109 57 chr3 112475839 112476104 -105561054 - L1ME LINE L1 -329 5792 5514 21 36 0 0 chr3 112477024 112477052 -105560106 + AT_rich Low_complexity Low_complexity 1 28 0 657 205 0 0 chr3 112479214 112479331 -105557827 + FLAM_C SINE Alu 1 117 -16 448 261 138 28 chr3 112479356 112479574 -105557584 - MIR SINE MIR 0 262 21 263 363 35 0 chr3 112479625 112479738 -105557420 - L2 LINE L2 -12 3301 3185 577 285 42 26 chr3 112480050 112480243 -105556915 - MER20 DNA MER1_type -20 199 4 3629 118 2 17 chr3 112480446 112480981 -105556177 - MER1A DNA MER1_type 0 527 1 2056 116 3 0 chr3 112481985 112482269 -105554889 + AluSq SINE Alu 3 287 -26 308 78 39 0 chr3 112482291 112482342 -105554816 + (TGAA)n Simple_repeat Simple_repeat 3 55 0 183 239 22 0 chr3 112482575 112482621 -105554537 - L2 LINE L2 0 3313 3267 187 292 0 0 chr3 112483584 112483632 -105553526 - L2 LINE L2 0 3313 3266 486 114 114 0 chr3 112483634 112483722 -105553436 - MER58 DNA MER1_type -3 2417 2320 239 347 102 0 chr3 112483848 112483946 -105553212 - MIR SINE MIR -60 148 41 451 319 14 24 chr3 112484087 112484297 -105552861 - MIR SINE MIR -13 249 43 372 290 35 18 chr3 112484847 112485016 -105552142 + MER117 DNA MER1_type 6 177 -20 3582 116 25 8 chr3 112485644 112486172 -105550986 + Tigger3b DNA MER2_type 2 538 -693 1118 188 4 30 chr3 112488221 112488455 -105548703 + AluJo SINE Alu 85 312 0 667 261 23 14 chr3 112488572 112488787 -105548371 - L1MC5 LINE L1 -50 7911 7695 296 315 19 19 chr3 112490584 112490692 -105546466 + MIR3 SINE MIR 4 111 -97 487 289 168 0 chr3 112491018 112491208 -105545950 - MIR SINE MIR -36 226 5 1887 145 10 7 chr3 112492065 112492375 -105544783 - AluSx SINE Alu -1 311 1 6759 61 15 0 chr3 112492778 112494392 -105542766 - L1PA7 LINE L1 0 6154 4530 2055 70 0 0 chr3 112494400 112494670 -105542488 + L1P LINE L1 4201 4470 -1676 229 324 83 37 chr3 112495502 112495610 -105541548 + L2 LINE L2 3201 3313 0 384 296 32 17 chr3 112495895 112496189 -105540969 - Tigger8 DNA MER2_type -196 470 128 759 177 20 38 chr3 112497506 112497706 -105539452 - MER6 DNA MER2_type 0 865 -62 22 0 0 0 chr3 112497834 112497856 -105539302 + AT_rich Low_complexity Low_complexity 1 22 0 740 145 0 16 chr3 112497857 112497981 -105539177 - FLAM_C SINE Alu -11 122 1 2356 66 0 0 chr3 112499315 112499604 -105537554 + AluY SINE Alu 14 302 -9 30 77 0 0 chr3 112500028 112500093 -105537065 + AT_rich Low_complexity Low_complexity 1 65 0 213 219 0 0 chr3 112500837 112500878 -105536280 - L2 LINE L2 -13 3259 3219 21 0 0 0 chr3 112501334 112501355 -105535803 + AT_rich Low_complexity Low_complexity 1 21 0 225 159 0 0 chr3 112501397 112501441 -105535717 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 2119 100 17 0 chr3 112501895 112502185 -105534973 + AluSx SINE Alu 1 295 -17 269 332 70 12 chr3 112502759 112503003 -105534155 - L1ME LINE L1 -346 5775 5518 243 245 0 0 chr3 112504011 112504064 -105533094 + (CA)n Simple_repeat Simple_repeat 2 54 0 29 0 0 0 chr3 112504745 112504774 -105532384 + AT_rich Low_complexity Low_complexity 1 29 0 1692 166 7 7 chr3 112505148 112505432 -105531726 - AluJb SINE Alu -24 288 5 2202 100 3 3 chr3 112506049 112506350 -105530808 + AluSc SINE Alu 1 301 -8 32 26 0 0 chr3 112507202 112507241 -105529917 + AT_rich Low_complexity Low_complexity 1 39 0 357 60 0 0 chr3 112507324 112507374 -105529784 - Alu SINE Alu 0 302 253 2062 79 35 17 chr3 112507417 112507582 -105529576 - AluSc SINE Alu -14 295 121 2260 72 3 3 chr3 112507582 112507921 -105529237 - AluY SINE Alu 0 311 1 2062 79 35 17 chr3 112507921 112508045 -105529113 - AluSc SINE Alu -188 121 1 1830 148 3 16 chr3 112509402 112509712 -105527446 + AluSx SINE Alu 1 306 -6 21 36 0 0 chr3 112510080 112510108 -105527050 + AT_rich Low_complexity Low_complexity 1 28 0 2102 118 0 0 chr3 112510876 112511185 -105525973 + AluSc SINE Alu 1 309 0 205 256 17 137 chr3 112511479 112511596 -105525562 + MIR SINE MIR 42 144 -64 271 247 47 0 chr3 112511686 112511771 -105525387 + (TATATG)n Simple_repeat Simple_repeat 4 92 0 21 0 0 0 chr3 112512266 112512287 -105524871 + AT_rich Low_complexity Low_complexity 1 21 0 632 276 132 39 chr3 112512532 112513095 -105524063 + L2 LINE L2 2664 3280 -33 231 271 17 0 chr3 112514856 112514915 -105522243 + GA-rich Low_complexity Low_complexity 6 65 0 27 81 0 0 chr3 112515274 112515336 -105521822 + AT_rich Low_complexity Low_complexity 1 62 0 22 0 0 0 chr3 112516125 112516147 -105521011 + AT_rich Low_complexity Low_complexity 1 22 0 1592 82 0 0 chr3 112516250 112516445 -105520713 - AluY SINE Alu -17 294 100 236 265 0 0 chr3 112517140 112517208 -105519950 + L1ME LINE L1 5830 5897 -224 257 118 20 0 chr3 112517600 112517651 -105519507 + GA-rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr3 112517924 112517945 -105519213 + AT_rich Low_complexity Low_complexity 1 21 0 181 309 57 57 chr3 112518948 112518964 -105518194 + MER5A DNA MER1_type 1 16 -173 549 251 135 0 chr3 112518964 112519103 -105518055 - MER5A DNA MER1_type 0 189 24 189 0 0 0 chr3 112519103 112519124 -105518034 + (CTG)n Simple_repeat Simple_repeat 2 22 0 549 251 135 0 chr3 112519124 112519147 -105518011 - MER5A DNA MER1_type -165 24 5 186 310 35 78 chr3 112519138 112519254 -105517904 - L2 LINE L2 -24 3289 3179 * 570 15 0 0 chr3 112520720 112520787 -105516371 + (GA)n Simple_repeat Simple_repeat 2 68 0 2179 8 0 16 chr3 112521250 112521505 -105515653 - L1HS LINE L1 0 6155 5905 516 284 50 45 chr3 112521849 112522096 -105515062 + L1ME LINE L1 5491 5739 -382 628 287 120 21 chr3 112522432 112523007 -105514151 + L1ME3A LINE L1 4214 4845 -1301 1827 197 58 26 chr3 112523017 112523398 -105513760 + MSTA LTR MaLR 1 417 -40 391 127 0 0 chr3 112523398 112523461 -105513697 - MSTA LTR MaLR 0 428 366 434 243 137 114 chr3 112523467 112523854 -105513304 + L1ME3A LINE L1 5762 6157 -13 26 0 0 0 chr3 112523855 112523881 -105513277 + AT_rich Low_complexity Low_complexity 1 26 0 6044 185 117 45 chr3 112524682 112526190 -105510968 - MER52A LTR ERV1 -18 1737 122 22 0 0 0 chr3 112526737 112526759 -105510399 + AT_rich Low_complexity Low_complexity 1 22 0 1910 155 7 3 chr3 112527250 112527554 -105509604 - AluJb SINE Alu -3 309 5 2000 138 47 44 chr3 112527579 112527942 -105509216 + THE1B LTR MaLR 1 364 0 10467 106 8 45 chr3 112527942 112529582 -105507576 + THE1B-int LTR MaLR 1 1580 0 1704 146 139 12 chr3 112529582 112529905 -105507253 + THE1B LTR MaLR 1 364 0 1249 220 70 51 chr3 112529979 112530351 -105506807 - LTR40a LTR ERVL -21 498 120 486 351 35 0 chr3 112530478 112530652 -105506506 - MER102b DNA MER1_type -10 331 152 4598 146 46 1 chr3 112530682 112531471 -105505687 + Tigger1 DNA MER2_type 246 1069 -1349 509 125 67 48 chr3 112531471 112531575 -105505583 + L1PA16 LINE L1 6061 6166 0 819 214 30 30 chr3 112531576 112531744 -105505414 + MLT1A1 LTR MaLR 146 313 -52 7617 145 48 14 chr3 112531756 112533069 -105504089 + Tigger1 DNA MER2_type 1061 2418 0 198 103 0 0 chr3 112533773 112533802 -105503356 + (T)n Simple_repeat Simple_repeat 1 29 0 746 282 12 51 chr3 112533918 112534173 -105502985 - MIR SINE MIR -17 245 1 243 372 89 66 chr3 112534270 112534662 -105502496 - L2 LINE L2 -21 3251 2851 2116 104 3 17 chr3 112535259 112535556 -105501602 + AluSp SINE Alu 2 294 -19 2329 248 60 30 chr3 112536325 112537090 -105500068 + L1PB2 LINE L1 3 790 -6073 8205 167 18 15 chr3 112537100 112539716 -105497442 + L1PB2 LINE L1 4180 6805 -62 760 173 31 0 chr3 112540214 112540341 -105496817 + MSTC LTR MaLR 1 131 -297 243 0 0 0 chr3 112541589 112541616 -105495542 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 196 364 0 0 chr3 112543241 112543296 -105493862 - L2 LINE L2 -342 2972 2918 225 247 124 52 chr3 112543443 112543540 -105493618 - MER5B DNA MER1_type -53 125 22 1319 201 54 0 chr3 112543581 112543875 -105493283 + AluJo SINE Alu 1 310 -2 261 83 0 0 chr3 112544341 112544377 -105492781 + (TG)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr3 112545377 112545398 -105491760 + AT_rich Low_complexity Low_complexity 1 21 0 256 264 33 11 chr3 112545717 112545808 -105491350 + (CATATA)n Simple_repeat Simple_repeat 2 94 0 2044 137 3 0 chr3 112546087 112546379 -105490779 - AluSq SINE Alu -20 293 1 24 0 0 0 chr3 112546717 112546741 -105490417 + AT_rich Low_complexity Low_complexity 1 24 0 2411 72 7 3 chr3 112546880 112547187 -105489971 - AluY SINE Alu -3 308 1 1904 117 50 7 chr3 112548800 112549099 -105488059 - AluSx SINE Alu 0 312 1 21 0 0 0 chr3 112549562 112549583 -105487575 + AT_rich Low_complexity Low_complexity 1 21 0 301 277 48 0 chr3 112549754 112549837 -105487321 - L2 LINE L2 -2 3270 3184 182 308 154 40 chr3 112549908 112550135 -105487023 - L2 LINE L2 -2417 897 645 21 0 0 0 chr3 112551433 112551454 -105485704 + AT_rich Low_complexity Low_complexity 1 21 0 286 250 42 89 chr3 112552294 112552530 -105484628 + L1ME4a LINE L1 5849 6073 -48 243 277 128 54 chr3 112553574 112553722 -105483436 + MIR3 SINE MIR 45 203 -5 1076 92 255 5 chr3 112554586 112554770 -105482388 + MER30 DNA MER1_type 1 230 0 301 316 11 0 chr3 112554786 112554881 -105482277 + MIR SINE MIR 72 167 -95 737 237 173 68 chr3 112554911 112555364 -105481794 + MLT1H1 LTR MaLR 1 543 -6 30 45 0 0 chr3 112556352 112556396 -105480762 + AT_rich Low_complexity Low_complexity 1 44 0 378 376 40 0 chr3 112556708 112556857 -105480301 - L2 LINE L2 -1 3271 3117 604 212 152 12 chr3 112558244 112558409 -105478749 + MER5A DNA MER1_type 2 189 0 307 259 76 63 chr3 112560696 112560854 -105476304 - MIR3 SINE MIR -9 199 40 768 253 94 31 chr3 112561015 112561138 -105476020 + L1ME3A LINE L1 5589 5703 -467 2091 85 11 4 chr3 112561138 112561419 -105475739 - AluSc SINE Alu -14 295 13 768 253 94 31 chr3 112561419 112561615 -105475543 + L1ME3A LINE L1 5703 5928 -242 1952 101 70 0 chr3 112561954 112562241 -105474917 - AluSg SINE Alu -3 307 1 5608 111 19 24 chr3 112562277 112563826 -105473332 + L1PA15 LINE L1 4607 6156 -9 36 0 0 0 chr3 112564517 112564553 -105472605 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 112566142 112566163 -105470995 + AT_rich Low_complexity Low_complexity 1 21 0 375 230 122 79 chr3 112566276 112566383 -105470775 + MIR3 SINE MIR 38 154 -54 527 227 58 23 chr3 112566383 112566555 -105470603 + MER5B DNA MER1_type 1 178 0 375 230 122 79 chr3 112566555 112566586 -105470572 + MIR3 SINE MIR 154 182 -26 440 328 23 17 chr3 112566589 112566766 -105470392 + MER5B DNA MER1_type 1 178 0 1013 223 45 19 chr3 112570337 112570458 -105466700 + MER33 DNA MER1_type 7 123 -2462 2024 122 0 7 chr3 112570458 112570753 -105466405 + AluSg SINE Alu 1 293 -17 1013 223 45 19 chr3 112570753 112570941 -105466217 + MER33 DNA MER1_type 123 324 0 228 366 33 7 chr3 112571238 112571391 -105465767 + L2 LINE L2 2582 2738 -576 1966 148 0 10 chr3 112571522 112571825 -105465333 - AluSx SINE Alu -12 300 1 208 197 15 15 chr3 112572112 112572178 -105464980 + GA-rich Low_complexity Low_complexity 3 68 0 608 195 0 0 chr3 112573494 112573607 -105463551 + FLAM_C SINE Alu 1 113 -30 27 49 0 0 chr3 112573816 112573857 -105463301 + AT_rich Low_complexity Low_complexity 1 41 0 392 304 101 36 chr3 112573995 112574163 -105462995 - MIR3 SINE MIR -6 202 24 238 295 26 0 chr3 112575228 112575306 -105461852 - L2 LINE L2 0 3313 3234 26 0 0 0 chr3 112576617 112576643 -105460515 + AT_rich Low_complexity Low_complexity 1 26 0 478 226 66 44 chr3 112577693 112577830 -105459328 + L1MD2 LINE L1 6135 6274 -85 2127 101 24 0 chr3 112577934 112578222 -105458936 - AluSq SINE Alu -18 295 1 347 331 106 74 chr3 112578476 112578920 -105458238 - L2 LINE L2 -3 3269 2812 192 280 23 91 chr3 112579102 112579234 -105457924 + MIR SINE MIR 85 207 -55 260 105 0 0 chr3 112579766 112579804 -105457354 + L1MA9 LINE L1 6275 6312 0 21 0 0 0 chr3 112579804 112579825 -105457333 + AT_rich Low_complexity Low_complexity 1 21 0 199 344 94 42 chr3 112580853 112581141 -105456017 + L2 LINE L2 2560 2862 -452 5839 60 5 20 chr3 112581654 112582437 -105454721 + L1PA7 LINE L1 5384 6154 0 2119 125 0 6 chr3 112585424 112585735 -105451423 + AluSx SINE Alu 1 309 -3 3512 123 19 4 chr3 112586080 112586599 -105450559 - MER1A DNA MER1_type 0 527 1 297 68 0 0 chr3 112587468 112587512 -105449646 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 228 271 194 23 chr3 112588163 112588292 -105448866 - L1MC/D LINE L1 -1898 5910 5760 22 35 0 0 chr3 112588298 112588327 -105448831 + AT_rich Low_complexity Low_complexity 1 29 0 386 345 39 34 chr3 112591217 112591423 -105445735 + L2 LINE L2 3102 3308 -5 201 241 35 17 chr3 112591589 112591647 -105445511 + GA-rich Low_complexity Low_complexity 1 59 0 229 238 32 0 chr3 112591745 112591808 -105445350 + L2 LINE L2 3244 3308 -5 22 35 0 0 chr3 112593088 112593117 -105444041 + AT_rich Low_complexity Low_complexity 1 29 0 195 42 0 0 chr3 112593706 112593730 -105443428 + (TG)n Simple_repeat Simple_repeat 2 25 0 829 285 126 21 chr3 112594276 112594609 -105442549 - MLT1J LTR MaLR -143 368 1 1645 169 12 38 chr3 112595597 112595917 -105441241 + AluJo SINE Alu 1 312 0 294 250 33 0 chr3 112597896 112597956 -105439202 - L2 LINE L2 -241 3072 3011 33 0 0 0 chr3 112598241 112598274 -105438884 + AT_rich Low_complexity Low_complexity 1 33 0 242 287 58 0 chr3 112598988 112599075 -105438083 - L2 LINE L2 -1 3312 3221 268 344 203 5 chr3 112599155 112599347 -105437811 - L2 LINE L2 -259 3054 2825 27 81 0 0 chr3 112599887 112599949 -105437209 + AT_rich Low_complexity Low_complexity 1 62 0 1217 141 115 44 chr3 112600300 112600592 -105436566 + L1MA8 LINE L1 5979 6296 -4 2409 71 0 0 chr3 112600595 112600892 -105436266 + AluY SINE Alu 1 297 -14 27 0 0 0 chr3 112602603 112602630 -105434528 + AT_rich Low_complexity Low_complexity 1 27 0 26 30 0 0 chr3 112603933 112603966 -105433192 + AT_rich Low_complexity Low_complexity 1 33 0 1069 168 8 59 chr3 112604291 112604529 -105432629 - AluJo SINE Alu 0 312 87 1605 104 183 0 chr3 112604885 112605136 -105432022 - AluSc SINE Alu -12 297 1 741 266 74 0 chr3 112605793 112605996 -105431162 - MER58A DNA MER1_type 0 224 7 2304 73 0 3 chr3 112606965 112607253 -105429905 - AluY SINE Alu -24 287 1 1322 258 113 27 chr3 112607380 112607856 -105429302 + LTR40a LTR ERVL 3 519 0 279 350 8 17 chr3 112608208 112608325 -105428833 + MLT1L LTR MaLR 359 474 -141 830 243 67 0 chr3 112608475 112608685 -105428473 + MER58A DNA MER1_type 1 224 0 1444 230 69 25 chr3 112609400 112609847 -105427311 + MLT1C LTR MaLR 1 467 0 23 33 0 0 chr3 112611790 112611820 -105425338 + AT_rich Low_complexity Low_complexity 1 30 0 221 191 21 0 chr3 112612545 112612592 -105424566 + (TTG)n Simple_repeat Simple_repeat 1 48 0 333 0 0 0 chr3 112612892 112612929 -105424229 + (CA)n Simple_repeat Simple_repeat 1 37 0 283 280 80 0 chr3 112615584 112615659 -105421499 - MIR3 SINE MIR -54 154 74 29 0 0 0 chr3 112615700 112615729 -105421429 + AT_rich Low_complexity Low_complexity 1 29 0 3787 174 34 35 chr3 112616348 112617196 -105419962 + L1MC2 LINE L1 5487 6333 -11 5824 127 67 77 chr3 112617306 112618254 -105418904 + Tigger3b DNA MER2_type 17 951 -2077 2133 69 4 0 chr3 112618254 112618516 -105418642 - AluSp SINE Alu -50 263 1 5824 127 67 77 chr3 112618516 112618794 -105418364 + Tigger3b DNA MER2_type 951 1230 -1 2267 103 0 0 chr3 112620130 112620430 -105416728 - AluSg SINE Alu -10 300 1 722 256 0 6 chr3 112620465 112620625 -105416533 + MER69 DNA AcHobo 209 367 -859 1657 172 39 44 chr3 112620626 112621033 -105416125 + L1MA9 LINE L1 5874 6278 -34 483 309 58 16 chr3 112621064 112621255 -105415903 + MER69 DNA AcHobo 373 571 -655 584 254 23 6 chr3 112621256 112621429 -105415729 + MER69 DNA AcHobo 2351 2526 0 2283 104 3 0 chr3 112621569 112621878 -105415280 + AluSg SINE Alu 1 310 0 208 283 71 50 chr3 112622823 112622922 -105414236 - L2 LINE L2 -32 3281 3181 233 321 12 24 chr3 112622961 112623045 -105414113 - MIR3 SINE MIR -26 182 100 351 234 207 9 chr3 112623217 112623328 -105413830 - L2 LINE L2 0 3272 3140 289 167 0 37 chr3 112623813 112623867 -105413291 - L2 LINE L2 0 3313 3262 25 0 0 0 chr3 112624411 112624436 -105412722 + AT_rich Low_complexity Low_complexity 1 25 0 2335 63 0 38 chr3 112624869 112625186 -105411972 + AluY SINE Alu 1 305 -6 26 50 0 0 chr3 112625314 112625354 -105411804 + AT_rich Low_complexity Low_complexity 1 40 0 308 331 36 36 chr3 112625578 112625717 -105411441 + L2 LINE L2 3164 3302 -11 242 304 76 13 chr3 112625968 112626047 -105411111 + MIR SINE MIR 22 105 -157 21 36 0 0 chr3 112626651 112626679 -105410479 + AT_rich Low_complexity Low_complexity 1 28 0 405 58 0 0 chr3 112627177 112627229 -105409929 + (CA)n Simple_repeat Simple_repeat 1 52 0 533 373 89 38 chr3 112627325 112628392 -105408766 + L2 LINE L2 1837 2957 -357 21 0 0 0 chr3 112629088 112629109 -105408049 + AT_rich Low_complexity Low_complexity 1 21 0 378 365 18 30 chr3 112629700 112629867 -105407291 + L2 LINE L2 3101 3265 -7 733 273 16 0 chr3 112632093 112632276 -105404882 + MER5A DNA MER1_type 4 189 0 2158 81 13 7 chr3 112632406 112632423 -105404735 + MER4E LTR ERV1 1 16 -763 2202 85 13 7 chr3 112632423 112632730 -105404428 - AluY SINE Alu -2 309 1 2158 81 13 7 chr3 112632730 112633010 -105404148 + MER4E LTR ERV1 16 300 -479 619 186 0 0 chr3 112634871 112634973 -105402185 + MER44D DNA MER2_type 10 381 -228 1016 186 155 41 chr3 112635940 112636231 -105400927 - MLT2D LTR ERVL 0 414 91 22 0 0 0 chr3 112636580 112636602 -105400556 + AT_rich Low_complexity Low_complexity 1 22 0 416 209 0 12 chr3 112636721 112636807 -105400351 + MER20 DNA MER1_type 1 85 -134 949 197 11 6 chr3 112636856 112637034 -105400124 + FRAM SINE Alu 1 174 -2 249 135 0 0 chr3 112637044 112637081 -105400077 + MER20 DNA MER1_type 178 214 -5 1206 227 24 3 chr3 112637145 112637440 -105399718 + AluSc SINE Alu 5 305 -4 1455 35 0 0 chr3 112637462 112637632 -105399526 - MER4E LTR ERV1 -9 757 588 970 276 83 22 chr3 112640293 112640581 -105396577 - L2 LINE L2 -468 2846 2530 1403 169 69 48 chr3 112640581 112640913 -105396245 - MER44D DNA MER2_type 0 609 1 970 276 83 22 chr3 112640913 112640986 -105396172 - L2 LINE L2 -784 2530 2463 2263 86 28 0 chr3 112641214 112641505 -105395653 + AluSp SINE Alu 1 299 -14 903 242 77 86 chr3 112643650 112644166 -105392992 - MLT1J LTR MaLR -4 611 1 21 0 0 0 chr3 112644181 112644202 -105392956 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr3 112644298 112644329 -105392829 + (CA)n Simple_repeat Simple_repeat 1 31 0 26 0 0 0 chr3 112644979 112645005 -105392153 + AT_rich Low_complexity Low_complexity 1 26 0 233 260 78 13 chr3 112645009 112645086 -105392072 - MIR3 SINE MIR -5 203 122 2248 121 0 0 chr3 112645847 112646152 -105391006 + AluSq SINE Alu 1 305 -8 412 199 309 7 chr3 112646518 112646654 -105390504 - MER5B DNA MER1_type -1 177 1 328 370 64 15 chr3 112646689 112646892 -105390266 - L2 LINE L2 -820 2494 2282 1641 172 3 14 chr3 112647160 112647451 -105389707 + AluJo SINE Alu 1 288 -24 683 165 0 0 chr3 112647718 112647827 -105389331 + MER7A DNA MER2_type 1 107 -239 21 0 0 0 chr3 112649889 112649910 -105387248 + AT_rich Low_complexity Low_complexity 1 21 0 230 214 14 14 chr3 112650154 112650224 -105386934 + (TA)n Simple_repeat Simple_repeat 2 71 0 370 361 53 16 chr3 112650474 112650718 -105386440 - L3 LINE CR1 -193 1384 1132 729 21 0 0 chr3 112650821 112650914 -105386244 - AluYa5/8 SINE Alu -4 307 215 294 143 0 0 chr3 112651205 112651254 -105385904 + (CA)n Simple_repeat Simple_repeat 2 50 0 238 282 77 0 chr3 112653049 112653127 -105384031 - L2 LINE L2 -5 3267 3184 2251 66 3 3 chr3 112653422 112653724 -105383434 + AluY SINE Alu 1 302 -9 201 319 160 0 chr3 112653937 112654031 -105383127 + MIR SINE MIR 48 156 -106 1278 318 166 12 chr3 112654074 112654835 -105382323 + L2 LINE L2 2019 2896 -418 888 219 17 6 chr3 112655000 112655178 -105381980 - MER58A DNA MER1_type 0 224 45 359 288 93 43 chr3 112655243 112655382 -105381776 + L2 LINE L2 3168 3313 0 1066 226 0 9 chr3 112655661 112655882 -105381276 + MER20 DNA MER1_type 1 219 0 414 39 0 0 chr3 112656603 112656655 -105380503 + (TG)n Simple_repeat Simple_repeat 2 53 0 327 338 110 48 chr3 112656805 112657352 -105379806 + L2 LINE L2 2039 2619 -695 226 329 139 6 chr3 112657358 112657516 -105379642 + L2 LINE L2 2731 2909 -405 1598 124 109 4 chr3 112657574 112657857 -105379301 - AluSx SINE Alu 0 310 1 282 333 0 11 chr3 112658110 112658200 -105378958 + L2 LINE L2 3225 3313 0 627 276 78 37 chr3 112659685 112659902 -105377256 - MIR SINE MIR -19 243 18 887 207 25 5 chr3 112660117 112660315 -105376843 + MER3 DNA MER1_type 8 209 0 21 0 0 0 chr3 112660589 112660610 -105376548 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr3 112661521 112661542 -105375616 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 448 306 129 0 chr3 112661714 112661907 -105375251 + MIR SINE MIR 44 261 -1 1259 167 109 67 chr3 112662140 112662572 -105374586 - LTR7 LTR ERV1 0 450 1 2031 100 52 3 chr3 112663011 112663301 -105373857 - AluY SINE Alu -7 304 1 31 76 0 0 chr3 112663474 112663540 -105373618 + AT_rich Low_complexity Low_complexity 1 66 0 356 329 115 39 chr3 112664011 112664446 -105372712 + MLT1J LTR MaLR 44 511 0 22 0 0 0 chr3 112664979 112665001 -105372157 + AT_rich Low_complexity Low_complexity 1 22 0 225 293 98 16 chr3 112665131 112665254 -105371904 + MIR SINE MIR 106 238 -24 1978 221 45 37 chr3 112665606 112666168 -105370990 - L1ME1 LINE L1 -5 6161 5596 2048 178 33 2 chr3 112666177 112666570 -105370588 - L1MC3 LINE L1 -7 7778 7374 2573 252 60 58 chr3 112666597 112666967 -105370191 - L1MCa LINE L1 -3887 2858 2490 2131 133 3 0 chr3 112666967 112667276 -105369882 - AluSx SINE Alu 0 312 3 2573 252 60 58 chr3 112667276 112669299 -105367859 - L1MCa LINE L1 -4255 2490 482 545 299 12 6 chr3 112669348 112669515 -105367643 - L1MCa LINE L1 -5761 284 117 281 246 0 15 chr3 112669523 112669588 -105367570 - L1MCa LINE L1 -6344 220 157 * 6914 237 53 49 chr3 112669587 112670318 -105366840 - L1ME LINE L1 -564 5602 4875 2027 137 30 27 chr3 112670318 112670691 -105366467 - THE1C LTR MaLR 0 375 2 6914 237 53 49 chr3 112670691 112670848 -105366310 - L1ME LINE L1 -1291 4875 4720 2028 164 0 0 chr3 112670848 112671159 -105365999 - AluSx SINE Alu -1 311 1 6914 237 53 49 chr3 112671159 112673142 -105364016 - L1ME LINE L1 -1446 4720 2709 25 31 0 0 chr3 112673259 112673291 -105363867 + AT_rich Low_complexity Low_complexity 1 32 0 475 346 69 43 chr3 112673842 112674145 -105363013 + MLT1J2 LTR MaLR 83 393 -57 2191 90 30 7 chr3 112674261 112674562 -105362596 - AluSg SINE Alu -2 308 1 208 241 0 19 chr3 112675175 112675229 -105361929 + (CATA)n Simple_repeat Simple_repeat 3 55 0 22 56 0 0 chr3 112675527 112675563 -105361595 + AT_rich Low_complexity Low_complexity 1 36 0 351 273 11 23 chr3 112676396 112676484 -105360674 - L2 LINE L2 0 3272 3186 25 83 0 0 chr3 112677506 112677566 -105359592 + AT_rich Low_complexity Low_complexity 1 60 0 1720 147 29 0 chr3 112678417 112678696 -105358462 + L1PB4 LINE L1 5867 6153 -3 27 29 0 0 chr3 112679091 112679125 -105358033 + AT_rich Low_complexity Low_complexity 1 34 0 1562 172 7 32 chr3 112679314 112679622 -105357536 + AluJb SINE Alu 3 302 -10 2244 88 16 0 chr3 112680478 112680785 -105356373 - AluSx SINE Alu 0 312 1 1949 136 9 22 chr3 112681585 112681901 -105355257 - AluSx SINE Alu 0 312 1 2308 119 16 26 chr3 112682013 112682392 -105354766 + THE1C LTR MaLR 1 375 0 3722 147 107 5 chr3 112682843 112683498 -105353660 + MER50 LTR ERV1 1 722 -12 260 343 133 28 chr3 112684458 112684639 -105352519 - MIR3 SINE MIR -6 202 3 21 0 0 0 chr3 112685640 112685661 -105351497 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 112686650 112686671 -105350487 + AT_rich Low_complexity Low_complexity 1 21 0 2243 107 0 0 chr3 112686800 112687108 -105350050 - AluSg SINE Alu 0 310 3 2301 92 11 20 chr3 112687202 112687559 -105349599 - L1MA1 LINE L1 0 6302 5949 1596 69 9 0 chr3 112687647 112687864 -105349294 - L1MA1 LINE L1 -355 5947 5729 24 0 0 0 chr3 112688554 112688578 -105348580 + AT_rich Low_complexity Low_complexity 1 24 0 920 346 97 53 chr3 112689041 112690614 -105346544 - L2 LINE L2 -635 2679 1037 279 0 0 0 chr3 112691261 112691292 -105345866 + (TG)n Simple_repeat Simple_repeat 2 32 0 657 288 108 33 chr3 112691843 112691862 -105345296 + MIR SINE MIR 5 21 -241 1569 171 78 9 chr3 112691862 112692183 -105344975 + MER61A LTR ERV1 1 343 0 657 288 108 33 chr3 112692183 112692403 -105344755 + MIR SINE MIR 21 262 0 2484 73 0 0 chr3 112692879 112693180 -105343978 + AluY SINE Alu 3 303 -8 2214 140 33 6 chr3 112693583 112693948 -105343210 + THE1C LTR MaLR 1 375 0 12477 241 45 15 chr3 112694065 112695416 -105341742 - L1 LINE L1 -824 6741 5431 194 0 39 0 chr3 112695416 112695442 -105341716 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2108 117 0 3 chr3 112695444 112695735 -105341423 - AluSg SINE Alu -18 292 3 12477 241 45 15 chr3 112695735 112698698 -105338460 - L1 LINE L1 -2134 5431 2283 1061 101 27 48 chr3 112698719 112698907 -105338251 - L1PA10 LINE L1 -1 6167 5984 906 115 0 0 chr3 112699007 112699137 -105338021 - L1PA10 LINE L1 -196 5972 5843 1774 307 52 21 chr3 112699150 112699923 -105337235 - L1M3b LINE L1 -4865 1416 581 1028 304 128 19 chr3 112699978 112700617 -105336541 - L1M3b LINE L1 -5520 761 53 1807 157 10 20 chr3 112701881 112702187 -105334971 + AluSq SINE Alu 1 303 -10 202 188 0 29 chr3 112702287 112702356 -105334802 + GA-rich Low_complexity Low_complexity 2 68 0 300 251 100 71 chr3 112702421 112702541 -105334617 + L1MEd LINE L1 817 932 -5187 2136 121 0 3 chr3 112702541 112702839 -105334319 + AluSx SINE Alu 1 297 -15 300 251 100 71 chr3 112702839 112703068 -105334090 + L1MEd LINE L1 932 1176 -4943 311 335 62 6 chr3 112703613 112703792 -105333366 - L1M4 LINE L1 -763 5383 5195 422 253 162 0 chr3 112704381 112704535 -105332623 - MIR SINE MIR -39 223 45 24 53 0 0 chr3 112704581 112704619 -105332539 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr3 112705016 112705037 -105332121 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 112705830 112705851 -105331307 + AT_rich Low_complexity Low_complexity 1 21 0 290 291 256 5 chr3 112706089 112706292 -105330866 + MER102b DNA MER1_type 87 340 -1 3918 195 15 3 chr3 112706582 112707306 -105329852 + MER44D DNA MER2_type 1 605 0 2527 42 0 13 chr3 112707772 112708080 -105329078 - AluY SINE Alu -7 304 1 22 0 0 0 chr3 112708877 112708899 -105328259 + AT_rich Low_complexity Low_complexity 1 22 0 454 283 92 6 chr3 112708966 112709139 -105328019 - MIR SINE MIR -11 251 64 2219 99 20 0 chr3 112710579 112710873 -105326285 + AluSx SINE Alu 1 300 -12 739 302 118 31 chr3 112711189 112711767 -105325391 + L2 LINE L2 2692 3312 -1 243 326 12 0 chr3 112711967 112712053 -105325105 + MIR3 SINE MIR 90 176 -32 24 0 0 0 chr3 112713968 112713992 -105323166 + AT_rich Low_complexity Low_complexity 1 24 0 2525 114 6 3 chr3 112714386 112714737 -105322421 - THE1B LTR MaLR -12 352 1 328 285 11 38 chr3 112715372 112715411 -105321747 - L1ME4a LINE L1 -235 5886 5847 1247 207 71 71 chr3 112715411 112715807 -105321351 + MSTD LTR MaLR 1 396 0 328 285 11 38 chr3 112715807 112715953 -105321205 - L1ME4a LINE L1 -274 5847 5706 2369 83 0 0 chr3 112718135 112718435 -105318723 - AluSp SINE Alu -13 300 1 220 329 13 13 chr3 112718716 112718792 -105318366 + L2 LINE L2 3098 3173 -99 2552 37 0 7 chr3 112718799 112719099 -105318059 - AluY SINE Alu -10 301 4 2337 98 0 0 chr3 112719737 112720043 -105317115 - AluSc SINE Alu -3 306 1 237 286 29 0 chr3 112720309 112720379 -105316779 + CT-rich Low_complexity Low_complexity 4 75 0 26 0 0 0 chr3 112720437 112720463 -105316695 + AT_rich Low_complexity Low_complexity 1 26 0 2370 100 0 0 chr3 112721072 112721382 -105315776 + AluSx SINE Alu 1 310 -2 2071 129 3 35 chr3 112721397 112721714 -105315444 + AluSq SINE Alu 1 307 -6 312 286 134 17 chr3 112721846 112721965 -105315193 + MIR SINE MIR 32 164 -98 220 326 47 0 chr3 112722121 112722207 -105314951 - MER91B DNA MER1_type -11 179 90 214 324 59 59 chr3 112722240 112722342 -105314816 - MER91A DNA MER1_type -80 116 15 24 0 0 0 chr3 112722617 112722641 -105314517 + AT_rich Low_complexity Low_complexity 1 24 0 233 318 37 9 chr3 112722960 112723067 -105314091 + MLT1L LTR MaLR 503 612 -3 350 367 98 40 chr3 112723234 112723901 -105313257 - L3 LINE CR1 -618 959 255 734 317 4 38 chr3 112724232 112724497 -105312661 + MIR SINE MIR 3 258 -4 488 289 40 27 chr3 112726223 112726372 -105310786 - MER5A DNA MER1_type -37 152 2 5466 117 0 5 chr3 112727176 112727960 -105309198 + LTR17 LTR ERV1 1 780 0 1923 194 15 20 chr3 112728010 112728402 -105308756 - MLT1B LTR MaLR 0 390 1 373 321 62 19 chr3 112728870 112729032 -105308126 - MIR SINE MIR -13 249 81 602 235 18 95 chr3 112729046 112729293 -105307865 - L1ME1 LINE L1 -5 6161 5925 545 192 16 32 chr3 112729368 112729493 -105307665 - L1MEc LINE L1 -6231 165 43 700 126 0 27 chr3 112729886 112729997 -105307161 + AluJo SINE Alu 121 228 -84 2165 117 13 0 chr3 112730567 112730867 -105306291 + AluSg SINE Alu 1 304 -6 2267 101 3 16 chr3 112730879 112731185 -105305973 + AluSp SINE Alu 1 302 -11 315 306 65 0 chr3 112731506 112731614 -105305544 + L2 LINE L2 3199 3313 0 394 307 49 63 chr3 112731632 112731919 -105305239 + L2 LINE L2 2835 3117 -155 2262 123 24 19 chr3 112732297 112732670 -105304488 - THE1C LTR MaLR 0 375 1 4107 123 5 8 chr3 112732675 112733276 -105303882 - THE1C-int LTR MaLR -7 1573 975 2579 111 18 20 chr3 112733287 112733685 -105303473 - THE1C-int LTR MaLR -1183 397 1 2273 136 19 19 chr3 112733685 112734060 -105303098 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr3 112734304 112734325 -105302833 + AT_rich Low_complexity Low_complexity 1 21 0 236 108 62 31 chr3 112734454 112734519 -105302639 + (TA)n Simple_repeat Simple_repeat 2 68 0 2427 66 0 7 chr3 112734576 112734880 -105302278 + AluY SINE Alu 1 302 -9 610 285 49 22 chr3 112735217 112735484 -105301674 + L1MA9 LINE L1 6010 6283 -29 1827 172 49 3 chr3 112736766 112737115 -105300043 + MLT1A1 LTR MaLR 1 365 0 23 33 0 0 chr3 112737855 112737885 -105299273 + AT_rich Low_complexity Low_complexity 1 30 0 240 341 14 49 chr3 112738450 112738593 -105298565 - L2 LINE L2 -285 2987 2852 289 309 109 0 chr3 112738982 112739092 -105298066 - L2 LINE L2 -5 3267 3146 398 307 193 13 chr3 112739251 112739401 -105297757 - L3 LINE CR1 -29 1548 1426 183 42 0 0 chr3 112739401 112739425 -105297733 + (TAA)n Simple_repeat Simple_repeat 1 24 0 398 307 193 13 chr3 112739425 112739502 -105297656 - L3 LINE CR1 -151 1426 1280 2253 167 38 0 chr3 112740466 112740861 -105296297 - LTR57 LTR ERVL -1 410 1 228 193 145 60 chr3 112741579 112741662 -105295496 - MIR SINE MIR 0 262 173 512 248 28 9 chr3 112741708 112741817 -105295341 + MER5A DNA MER1_type 2 112 -77 247 293 40 0 chr3 112742260 112742335 -105294823 + L2 LINE L2 3223 3300 -13 3508 159 21 5 chr3 112743593 112744220 -105292938 - L1MA6 LINE L1 -2 6298 5662 207 65 65 0 chr3 112744227 112744273 -105292885 + (TA)n Simple_repeat Simple_repeat 1 49 0 572 54 84 12 chr3 112744284 112744451 -105292707 + (TA)n Simple_repeat Simple_repeat 2 180 0 3745 169 15 17 chr3 112744451 112745451 -105291707 - L1MA6 LINE L1 -651 5649 4646 2616 136 6 17 chr3 112745447 112745924 -105291234 + L1MA6 LINE L1 4190 4661 -1485 * 31 44 0 0 chr3 112747147 112747192 -105289966 + AT_rich Low_complexity Low_complexity 1 45 0 580 295 38 24 chr3 112747412 112747622 -105289536 + L2 LINE L2 523 735 -2579 206 289 72 0 chr3 112747634 112747717 -105289441 + L2 LINE L2 877 965 -2349 2147 98 17 3 chr3 112748329 112748625 -105288533 + AluSx SINE Alu 3 302 -10 3604 308 124 33 chr3 112748948 112751030 -105286128 + L2 LINE L2 1013 3286 -27 2148 82 7 10 chr3 112751169 112751488 -105285670 - AluSp SINE Alu 0 313 1 6542 132 8 12 chr3 112751660 112753036 -105284122 - L1MA2 LINE L1 -41 7682 6314 313 76 0 121 chr3 112753033 112753099 -105284059 + L1 LINE L1 4553 4610 -1536 * 5066 175 31 24 chr3 112753094 112755181 -105281977 - L1MA2 LINE L1 -2767 4798 2699 261 0 0 0 chr3 112755181 112755210 -105281948 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 7402 24 2 0 chr3 112755210 112756080 -105281078 - L1PA3 LINE L1 -10 6145 5274 * 14524 28 0 1 chr3 112756072 112757796 -105279362 + L1PA3 LINE L1 3531 5253 -893 13841 160 93 4 chr3 112757797 112760271 -105276887 - L1MA2 LINE L1 -4859 2706 11 261 0 0 0 chr3 112760360 112760389 -105276769 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1799 194 9 12 chr3 112760396 112760737 -105276421 - MLT1A1 LTR MaLR -25 340 1 1202 261 32 77 chr3 112761158 112761690 -105275468 + LTR55 LTR ERV 7 514 -34 2736 158 11 2 chr3 112762397 112762865 -105274293 + L1PA16 LINE L1 5686 6157 -9 24 0 0 0 chr3 112762865 112762889 -105274269 + AT_rich Low_complexity Low_complexity 1 24 0 678 324 20 17 chr3 112763082 112763381 -105273777 + ERVL LTR ERVL 1416 1715 -4049 525 333 62 19 chr3 112763432 112763753 -105273405 + ERVL LTR ERVL 3846 4180 -1584 759 299 90 17 chr3 112764201 112764556 -105272602 - MLT1I LTR MaLR -7 402 22 180 77 0 0 chr3 112765925 112765951 -105271207 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 1854 264 33 49 chr3 112767515 112768087 -105269071 + MER21B LTR ERV1 92 654 -209 1982 132 50 34 chr3 112769111 112769468 -105267690 + THE1C LTR MaLR 1 363 -12 558 265 60 30 chr3 112769513 112769679 -105267479 - MIR SINE MIR 0 262 92 489 340 123 24 chr3 112770363 112770736 -105266422 + L1MEc LINE L1 34 443 -5953 1199 284 84 8 chr3 112770776 112771167 -105265991 + ERVL LTR ERVL 1656 2076 -2920 487 278 29 62 chr3 112771296 112771505 -105265653 - HERV16 LTR ERVL -2547 2449 2248 754 324 56 5 chr3 112771598 112771814 -105265344 + ERVL LTR ERVL 2855 3081 -1915 1143 251 69 20 chr3 112771944 112772291 -105264867 + LTR40a LTR ERVL 135 498 -21 2270 215 26 17 chr3 112773034 112773565 -105263593 + L1ME2 LINE L1 5628 6163 -1 807 234 63 10 chr3 112774682 112774887 -105262271 - MER58A DNA MER1_type -8 216 1 22 0 0 0 chr3 112774887 112774909 -105262249 + AT_rich Low_complexity Low_complexity 1 22 0 200 206 0 0 chr3 112776383 112776417 -105260741 + T-rich Low_complexity Low_complexity 4 37 0 1975 212 49 15 chr3 112776890 112777357 -105259801 + L1ME1 LINE L1 5562 6044 -122 487 211 53 0 chr3 112777357 112777452 -105259706 - AluJ/FLAM SINE Alu -212 100 1 385 244 41 32 chr3 112777452 112777577 -105259581 + L1ME1 LINE L1 6047 6331 -3 948 98 15 0 chr3 112777666 112777798 -105259360 + AluSg/x SINE Alu 165 298 -14 289 260 14 0 chr3 112778115 112778188 -105258970 - L2 LINE L2 0 3313 3240 278 333 10 0 chr3 112778563 112778665 -105258493 + (TAG)n Simple_repeat Simple_repeat 2 104 0 1699 166 86 6 chr3 112779588 112779926 -105257232 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr3 112780331 112780352 -105256806 + AT_rich Low_complexity Low_complexity 1 21 0 1882 127 13 48 chr3 112780980 112781294 -105255864 + AluJb SINE Alu 5 307 -5 207 244 0 0 chr3 112781464 112781509 -105255649 + MIR SINE MIR 61 105 -103 582 301 20 25 chr3 112783385 112783584 -105253574 + MIR SINE MIR 40 237 -25 1113 211 49 11 chr3 112783797 112784062 -105253096 - ORSL DNA AcHobo 0 275 1 21 57 0 0 chr3 112784493 112784528 -105252630 + AT_rich Low_complexity Low_complexity 1 35 0 423 244 33 83 chr3 112785104 112785284 -105251874 + MIR SINE MIR 52 222 -40 274 253 259 32 chr3 112785920 112786078 -105251080 - MIR SINE MIR -6 256 63 468 268 92 57 chr3 112787335 112787970 -105249188 + L1ME LINE L1 902 1630 -860 2563 33 0 3 chr3 112788643 112788946 -105248212 - AluY SINE Alu -9 302 1 362 301 121 42 chr3 112788982 112789361 -105247797 + L1ME LINE L1 2193 2601 -3528 268 327 24 20 chr3 112789599 112789847 -105247311 + L1ME LINE L1 2850 3098 -3031 315 270 26 0 chr3 112790345 112790460 -105246698 + L1ME LINE L1 3572 3689 -2440 1898 179 48 15 chr3 112790461 112790857 -105246301 + MSTB1 LTR MaLR 1 409 -23 254 341 48 15 chr3 112790969 112791306 -105245852 + L1ME LINE L1 4798 5145 -984 424 299 75 27 chr3 112791352 112791905 -105245253 + L1ME LINE L1 5252 5869 -284 716 341 125 16 chr3 112793744 112794240 -105242918 + L2 LINE L2 37 586 -2728 533 197 148 28 chr3 112795279 112795421 -105241737 + MER3 DNA MER1_type 47 205 -4 198 286 82 0 chr3 112796044 112796093 -105241065 + L2 LINE L2 3253 3305 -8 1829 156 0 56 chr3 112796443 112796802 -105240356 + MER44D DNA MER2_type 1 609 0 1429 180 5 102 chr3 112797218 112797612 -105239546 - MLT1A1 LTR MaLR 0 365 10 2373 97 0 0 chr3 112797632 112797940 -105239218 - AluSg SINE Alu -2 308 1 269 273 80 0 chr3 112798035 112798123 -105239035 - L2 LINE L2 -4 3268 3174 483 311 7 73 chr3 112798230 112798516 -105238642 + MLT1J LTR MaLR 91 357 -154 219 325 50 0 chr3 112798845 112798925 -105238233 - L2 LINE L2 -3 3269 3186 450 253 166 64 chr3 112799396 112799472 -105237686 + L1M4 LINE L1 4324 4391 -1755 1748 129 91 0 chr3 112799472 112799736 -105237422 - AluSx SINE Alu -24 288 1 450 253 166 64 chr3 112799736 112799806 -105237352 + L1M4 LINE L1 4391 4452 -1694 2162 90 7 0 chr3 112799806 112800094 -105237064 - AluY SINE Alu -21 290 1 450 253 166 64 chr3 112800094 112800850 -105236308 + L1M4 LINE L1 4452 5319 -827 235 231 0 0 chr3 112800886 112800951 -105236207 + L1PA16 LINE L1 5374 5438 -713 647 313 8 88 chr3 112800951 112801347 -105235811 - MLT1E2-int LTR MaLR -309 1062 699 990 249 28 30 chr3 112801567 112802052 -105235106 - MLT1E2-int LTR MaLR -769 602 1 1535 284 69 22 chr3 112802052 112802650 -105234508 - MLT1E2 LTR MaLR 0 626 1 1271 256 67 31 chr3 112802653 112803269 -105233889 + L1M4 LINE L1 2128 2765 -3381 1665 150 85 28 chr3 112804002 112804355 -105232803 + THE1C LTR MaLR 1 373 -2 243 164 16 66 chr3 112804486 112804547 -105232611 + L2 LINE L2 2998 3055 -217 1551 241 110 19 chr3 112804550 112805022 -105232136 + MLT2B1 LTR ERVL 1 515 -5 357 339 71 24 chr3 112805068 112805236 -105231922 + L2 LINE L2 3096 3271 -1 2390 124 67 20 chr3 112806660 112807063 -105230095 - MSTC LTR MaLR -4 424 3 2235 91 0 7 chr3 112807088 112807384 -105229774 - AluY SINE Alu -17 294 1 207 325 79 32 chr3 112807797 112807923 -105229235 + MIR SINE MIR 16 147 -115 2740 183 115 61 chr3 112807927 112808693 -105228465 + L1MC1 LINE L1 21 827 -5599 1616 288 23 21 chr3 112809234 112809891 -105227267 - MER65-int LTR ERV1 0 4871 4214 23 33 0 0 chr3 112810282 112810312 -105226846 + AT_rich Low_complexity Low_complexity 1 30 0 10563 134 45 4 chr3 112810691 112812166 -105224992 + Tigger1 DNA MER2_type 349 1914 -504 2742 170 43 4 chr3 112812166 112812718 -105224440 + L1PA16 LINE L1 5592 6165 -1 10563 134 45 4 chr3 112812718 112813084 -105224074 + Tigger1 DNA MER2_type 1914 2264 -154 4082 145 28 19 chr3 112813092 112813850 -105223308 - L1MA4A LINE L1 -44 6259 5495 650 173 25 80 chr3 112813850 112813900 -105223258 + Tigger1 DNA MER2_type 2266 2317 -101 2152 107 0 25 chr3 112813900 112814218 -105222940 - AluSg SINE Alu 0 310 1 650 173 25 80 chr3 112814218 112814329 -105222829 + Tigger1 DNA MER2_type 2317 2418 0 6414 230 55 36 chr3 112814357 112816181 -105220977 + L1MC1 LINE L1 2911 4699 -1914 1973 58 8 0 chr3 112816181 112816421 -105220737 + AluY SINE Alu 69 310 -1 6414 230 55 36 chr3 112816421 112818212 -105218946 + L1MC1 LINE L1 4699 6613 0 787 78 0 0 chr3 112820809 112820951 -105216207 + L1PA8 LINE L1 6055 6196 0 27 0 0 0 chr3 112821352 112821379 -105215779 + AT_rich Low_complexity Low_complexity 1 27 0 477 357 37 17 chr3 112822108 112822408 -105214750 - L3 LINE CR1 -202 1375 1070 12169 193 43 7 chr3 112822426 112824904 -105212254 + L1MA1 LINE L1 17 2584 -4981 8878 146 12 31 chr3 112824907 112827005 -105210153 + L1MA1 LINE L1 4929 6959 -762 2202 107 7 7 chr3 112827005 112827314 -105209844 + AluSc SINE Alu 1 309 0 8878 146 12 31 chr3 112827314 112828063 -105209095 + L1MA1 LINE L1 6959 7721 0 451 282 224 8 chr3 112828075 112828320 -105208838 - L3 LINE CR1 -498 1079 782 744 198 6 64 chr3 112829177 112829276 -105207882 + AluJo SINE Alu 13 99 -213 2182 155 80 10 chr3 112829276 112829676 -105207482 + MSTA LTR MaLR 1 428 0 744 198 6 64 chr3 112829676 112829748 -105207410 + AluJo SINE Alu 99 174 -138 314 135 0 4 chr3 112829748 112829809 -105207349 + Alu SINE Alu 246 299 -3 22 0 0 0 chr3 112831839 112831861 -105205297 + AT_rich Low_complexity Low_complexity 1 22 0 1917 80 0 4 chr3 112832509 112832758 -105204400 + AluSg SINE Alu 31 278 -32 868 67 36 15 chr3 112833552 112833747 -105203411 + SVA Other Other 596 794 -592 1374 115 33 67 chr3 112833760 112834211 -105202947 + SVA Other Other 433 868 -518 6326 77 18 32 chr3 112834264 112835270 -105201888 + SVA Other Other 430 1421 0 295 266 129 0 chr3 112835410 112835549 -105201609 - LTR33 LTR ERVL -28 493 337 401 282 149 5 chr3 112835578 112835766 -105201392 - LTR33 LTR ERVL -246 275 61 667 175 26 0 chr3 112835767 112835881 -105201277 - LTR12 LTR ERV1 -234 480 364 328 185 0 0 chr3 112835892 112835957 -105201201 - LTR30 LTR ERV1 -102 620 556 556 129 31 93 chr3 112835957 112836165 -105200993 - LTR12 LTR ERV1 -425 289 33 3837 69 22 54 chr3 112836296 112837287 -105199871 - SVA Other Other -551 1151 433 5464 71 23 53 chr3 112837315 112838150 -105199008 - SVA Other Other -520 866 57 870 38 0 0 chr3 112838150 112838256 -105198902 + (GGGAGA)n Simple_repeat Simple_repeat 5 110 0 216 111 0 0 chr3 112838597 112838633 -105198525 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1114 133 158 161 chr3 112838965 112839156 -105198002 - MSTA LTR MaLR 0 428 238 399 41 0 0 chr3 112839156 112839205 -105197953 + (CA)n Simple_repeat Simple_repeat 2 50 0 1114 133 158 161 chr3 112839205 112839442 -105197716 - MSTA LTR MaLR -190 238 1 260 326 70 47 chr3 112840680 112840809 -105196349 + L2 LINE L2 3141 3272 0 257 75 25 0 chr3 112841168 112841208 -105195950 + (TTCC)n Simple_repeat Simple_repeat 4 44 0 2676 88 40 90 chr3 112841358 112841859 -105195299 - SVA Other Other -518 868 393 247 362 0 0 chr3 112842794 112842888 -105194270 + L3 LINE CR1 661 754 -823 237 333 44 56 chr3 112843003 112843273 -105193885 + L3 LINE CR1 766 1032 -545 340 342 90 34 chr3 112843319 112843553 -105193605 + L1MC/D LINE L1 5371 5617 -2191 319 329 26 23 chr3 112843660 112843908 -105193250 + MLT1I LTR MaLR 128 406 -3 433 350 15 0 chr3 112843921 112844121 -105193037 + L1MC/D LINE L1 5614 5816 -1992 780 279 104 48 chr3 112844825 112845180 -105191978 + LTR16A1 LTR ERVL 4 378 -79 402 85 0 0 chr3 112845234 112845293 -105191865 + (TG)n Simple_repeat Simple_repeat 2 60 0 1496 191 48 5 chr3 112845434 112845806 -105191352 - L1MEc LINE L1 -4430 2141 1771 190 74 0 0 chr3 112845806 112845833 -105191325 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1815 138 0 0 chr3 112845833 112846087 -105191071 - AluSx SINE Alu -28 284 31 3999 167 9 35 chr3 112846087 112846870 -105190288 - LTR1 LTR ERV1 0 785 23 240 230 0 14 chr3 112846952 112847026 -105190132 - L1MEc LINE L1 -4828 1712 1640 283 192 23 29 chr3 112847224 112847396 -105189762 + CT-rich Low_complexity Low_complexity 1 171 0 990 93 11 27 chr3 112847397 112847580 -105189578 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1366 195 8 0 chr3 112847585 112847831 -105189327 - AluJb SINE Alu -64 248 1 233 276 117 41 chr3 112848088 112848233 -105188925 + MIR SINE MIR 30 185 -77 261 348 40 44 chr3 112848288 112848491 -105188667 - MIR SINE MIR -51 211 4 1449 128 0 25 chr3 112849228 112849463 -105187695 - L1PA13 LINE L1 -8 6155 5927 234 279 25 25 chr3 112850943 112851022 -105186136 - L1ME LINE L1 -523 5598 5520 250 313 0 0 chr3 112852310 112852377 -105184781 + GA-rich Low_complexity Low_complexity 2 68 0 1110 117 0 0 chr3 112852377 112852556 -105184602 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 500 229 139 0 chr3 112852773 112852917 -105184241 + MER3 DNA MER1_type 46 209 0 336 23 23 0 chr3 112852955 112852999 -105184159 + MADE1 DNA Mariner 1 45 -35 317 203 14 0 chr3 112854309 112854376 -105182782 - MER82 DNA MER2_type -3 650 583 877 169 19 0 chr3 112854376 112854530 -105182628 - MLT1A1 LTR MaLR 0 365 209 2053 214 37 0 chr3 112854536 112854943 -105182215 - MER72 LTR ERV1 -3 719 298 25 0 0 0 chr3 112854945 112854970 -105182188 + AT_rich Low_complexity Low_complexity 1 25 0 770 86 9 0 chr3 112854970 112855086 -105182072 - LTR9B LTR ERV1 -84 560 444 720 221 47 75 chr3 112855219 112855282 -105181876 - MER72 LTR ERV1 -515 207 144 2248 101 3 20 chr3 112855282 112855588 -105181570 + AluSg SINE Alu 1 301 -9 720 221 47 75 chr3 112855588 112855737 -105181421 - MER72 LTR ERV1 -578 144 1 1353 126 0 23 chr3 112855737 112855952 -105181206 - MLT1A1 LTR MaLR -153 212 3 * 1385 221 65 3 chr3 112855952 112856258 -105180900 - MER82 DNA MER2_type -65 588 264 8036 170 11 28 chr3 112856358 112858897 -105178261 - L1P3 LINE L1 -3903 2558 5 776 259 60 86 chr3 112858910 112859459 -105177699 - HAL1 LINE L1 -1385 1122 588 1239 199 10 74 chr3 112859753 112860049 -105177109 - AluJo SINE Alu -12 300 24 481 353 38 0 chr3 112860073 112860339 -105176819 - HAL1 LINE L1 -2222 285 10 2148 105 7 3 chr3 112860878 112861172 -105175986 + AluSx SINE Alu 15 309 -3 22 35 0 0 chr3 112861538 112861567 -105175591 + AT_rich Low_complexity Low_complexity 1 29 0 252 309 60 0 chr3 112861817 112861901 -105175257 + L2 LINE L2 3225 3313 0 323 146 18 0 chr3 112862004 112862059 -105175099 - MER58B DNA MER1_type 0 341 286 925 251 41 67 chr3 112862122 112862464 -105174694 - MER58B DNA MER1_type 0 341 9 650 152 18 98 chr3 112863386 112863550 -105173608 + MLT1A1 LTR MaLR 1 151 -214 946 110 30 4 chr3 112863559 112863798 -105173360 + CT-rich Low_complexity Low_complexity 1 245 0 273 250 157 0 chr3 112863818 112863926 -105173232 + MLT1A1 LTR MaLR 225 349 -25 192 40 0 0 chr3 112863926 112863951 -105173207 + (T)n Simple_repeat Simple_repeat 1 25 0 2246 99 7 3 chr3 112864111 112864413 -105172745 - AluSp SINE Alu -10 303 1 1854 65 8 27 chr3 112864434 112864694 -105172464 - SVA Other Other 0 1386 1132 230 304 0 0 chr3 112864815 112864871 -105172287 - MER82 DNA MER2_type -597 56 1 25 31 0 0 chr3 112866113 112866145 -105171013 + AT_rich Low_complexity Low_complexity 1 32 0 182 364 25 25 chr3 112866229 112866350 -105170808 + MIR SINE MIR 140 260 -2 192 330 82 0 chr3 112866401 112866498 -105170660 - MIR SINE MIR -66 142 38 325 216 102 34 chr3 112868310 112868398 -105168760 + MER70A LTR ERVL 355 448 -24 2322 278 112 34 chr3 112868501 112869411 -105167747 + HAL1 LINE L1 649 1487 -1020 6241 134 54 33 chr3 112869411 112870616 -105166542 - Tigger3b DNA MER2_type -1 1230 1 2322 278 112 34 chr3 112870616 112871363 -105165795 + HAL1 LINE L1 1487 2488 -19 22 0 0 0 chr3 112871407 112871429 -105165729 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr3 112871552 112871583 -105165575 + AT_rich Low_complexity Low_complexity 1 31 0 2146 262 99 58 chr3 112873225 112873660 -105163498 - HAL1 LINE L1 0 2507 2091 2431 73 0 0 chr3 112873660 112873962 -105163196 - AluY SINE Alu -9 302 1 2146 262 99 58 chr3 112873962 112874822 -105162336 - HAL1 LINE L1 -416 2091 1154 2333 170 35 16 chr3 112874822 112875274 -105161884 + LOR1b LTR ERV1 1 461 0 2146 262 99 58 chr3 112875274 112875310 -105161848 - HAL1 LINE L1 -1353 1154 1121 18347 117 5 3 chr3 112875336 112878990 -105158168 - L1PA8A LINE L1 -28 6103 2443 7832 188 5 3 chr3 112879097 112881285 -105155873 + L1PB1 LINE L1 3595 5790 -361 252 0 0 0 chr3 112881285 112881313 -105155845 + (TA)n Simple_repeat Simple_repeat 2 29 0 7832 188 5 3 chr3 112881313 112881675 -105155483 + L1PB1 LINE L1 5790 6150 -1 4166 145 7 17 chr3 112882036 112882733 -105154425 + L1PA16 LINE L1 5476 6165 -1 2166 96 7 0 chr3 112882760 112883069 -105154089 + AluSp SINE Alu 1 311 0 26 74 0 0 chr3 112884369 112884423 -105152735 + AT_rich Low_complexity Low_complexity 1 54 0 272 318 127 28 chr3 112885288 112885540 -105151618 - L2 LINE L2 -1107 2207 1931 303 175 0 0 chr3 112885950 112886007 -105151151 + (CA)n Simple_repeat Simple_repeat 1 57 0 243 103 0 0 chr3 112886627 112886666 -105150492 + (GA)n Simple_repeat Simple_repeat 1 39 0 388 182 0 0 chr3 112886952 112887018 -105150140 + MLT1A1 LTR MaLR 300 365 0 189 0 0 0 chr3 112887244 112887265 -105149893 + (A)n Simple_repeat Simple_repeat 1 21 0 30 0 0 0 chr3 112887405 112887435 -105149723 + AT_rich Low_complexity Low_complexity 1 30 0 656 177 52 68 chr3 112888457 112888649 -105148509 + MER53 DNA DNA 1 189 0 616 153 28 21 chr3 112888693 112888837 -105148321 + MER53 DNA DNA 42 186 -3 530 300 40 7 chr3 112889958 112890108 -105147050 - MIR SINE MIR -82 180 26 2307 109 0 0 chr3 112890109 112890413 -105146745 - AluSx SINE Alu -8 304 1 284 397 32 16 chr3 112891523 112891712 -105145446 - MIR SINE MIR -1 261 70 1999 172 32 36 chr3 112892057 112892606 -105144552 - MLT2A2 LTR ERVL -12 542 1 28 48 0 0 chr3 112892959 112893001 -105144157 + AT_rich Low_complexity Low_complexity 1 42 0 313 339 78 57 chr3 112893278 112893879 -105143279 - L2 LINE L2 -400 2914 2301 645 241 35 41 chr3 112895250 112895420 -105141738 - MER5B DNA MER1_type -8 170 2 519 95 14 0 chr3 112895753 112895827 -105141331 - MADE1 DNA Mariner -5 75 1 377 296 113 15 chr3 112896798 112897001 -105140157 - MIR SINE MIR -1 261 39 533 249 210 10 chr3 112897579 112897784 -105139374 - MIR SINE MIR 0 262 17 397 339 156 5 chr3 112897867 112898053 -105139105 + MIR SINE MIR 32 245 -17 22 0 0 0 chr3 112898825 112898847 -105138311 + AT_rich Low_complexity Low_complexity 1 22 0 1419 187 78 22 chr3 112899284 112899605 -105137553 + MER44D DNA MER2_type 1 609 0 181 359 0 16 chr3 112900040 112900104 -105137054 + MIR SINE MIR 52 114 -148 1610 175 36 14 chr3 112900257 112900537 -105136621 - AluJo SINE Alu -24 288 3 3098 239 143 38 chr3 112900538 112901674 -105135484 - L1MDa LINE L1 -4959 1581 327 399 151 55 0 chr3 112901672 112901745 -105135413 - L1MDa LINE L1 -6448 92 16 * 185 32 0 65 chr3 112901753 112901784 -105135374 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 351 306 94 72 chr3 112902576 112902756 -105134402 - MIR3 SINE MIR -5 203 20 26 0 0 0 chr3 112903462 112903488 -105133670 + AT_rich Low_complexity Low_complexity 1 26 0 1663 267 69 20 chr3 112903844 112904335 -105132823 + LTR40a LTR ERVL 1 515 -4 1315 142 54 29 chr3 112904987 112905303 -105131855 + MER33 DNA MER1_type 1 324 0 224 272 0 87 chr3 112906392 112906422 -105130736 - MIR SINE MIR -148 114 83 1564 206 42 14 chr3 112906422 112906776 -105130382 + MLT1A1 LTR MaLR 2 365 0 224 272 0 87 chr3 112906776 112906848 -105130310 - MIR SINE MIR -179 83 21 366 280 6 54 chr3 112906971 112907139 -105130019 + CT-rich Low_complexity Low_complexity 1 160 0 389 299 32 32 chr3 112907319 112907476 -105129682 - MIR3 SINE MIR -4 204 48 292 313 97 28 chr3 112908124 112908300 -105128858 + MIR SINE MIR 73 260 -2 968 303 181 47 chr3 112910278 112911242 -105125916 + L2 LINE L2 1785 2877 -437 208 338 81 0 chr3 112911527 112911601 -105125557 + L2 LINE L2 3137 3216 -56 240 167 0 0 chr3 112911690 112911738 -105125420 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 278 241 0 38 chr3 112912069 112912148 -105125010 + L1ME LINE L1 5726 5801 -320 360 0 0 0 chr3 112914014 112914054 -105123104 + (TC)n Simple_repeat Simple_repeat 2 41 0 28 48 0 0 chr3 112914396 112914438 -105122720 + AT_rich Low_complexity Low_complexity 1 42 0 359 317 83 0 chr3 112915206 112915326 -105121832 + MIR3 SINE MIR 65 194 -14 211 264 0 0 chr3 112915488 112915541 -105121617 + MIR3 SINE MIR 150 202 -6 187 345 36 0 chr3 112915563 112915647 -105121511 - MIR3 SINE MIR -7 201 115 337 256 24 24 chr3 112916412 112916494 -105120664 + MIR SINE MIR 32 113 -95 10252 191 61 5 chr3 112917401 112919379 -105117779 + L1PA13 LINE L1 1 2090 -4697 4607 166 16 7 chr3 112919356 112919558 -105117600 + L1P LINE L1 5137 5336 -1461 * 185 0 40 0 chr3 112919558 112919583 -105117575 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 4607 166 16 7 chr3 112919583 112920277 -105116881 + L1P LINE L1 5336 6041 -756 1816 112 6 112 chr3 112920331 112920680 -105116478 + AluSx SINE Alu 1 312 0 24 0 0 0 chr3 112922167 112922191 -105114967 + AT_rich Low_complexity Low_complexity 1 24 0 185 297 135 27 chr3 112922297 112922408 -105114750 - L2 LINE L2 -2057 1257 1135 376 127 0 0 chr3 112922668 112922723 -105114435 - MER92C LTR ERV1 0 554 500 394 280 13 0 chr3 112922863 112922972 -105114186 - MER92B LTR ERV1 -438 116 1 297 244 2 0 chr3 112923576 112923664 -105113494 - MER31-int LTR ERV1 -468 4468 4399 429 154 0 0 chr3 112923807 112923872 -105113286 + AluJ/FLAM SINE Alu 1 65 -247 22 0 0 0 chr3 112924553 112924575 -105112583 + AT_rich Low_complexity Low_complexity 1 22 0 344 211 0 0 chr3 112924810 112924881 -105112277 - MER92C LTR ERV1 0 554 484 371 338 51 45 chr3 112925477 112925646 -105111512 + L2 LINE L2 2945 3118 -195 2289 165 28 37 chr3 112925646 112926107 -105111051 + MSTB2 LTR MaLR 1 457 0 371 338 51 45 chr3 112926107 112926248 -105110910 + L2 LINE L2 3118 3257 -56 189 107 0 0 chr3 112926261 112926289 -105110869 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 260 321 74 10 chr3 112926296 112926404 -105110754 - MIR3 SINE MIR -91 117 5 22 56 0 0 chr3 112926518 112926554 -105110604 + AT_rich Low_complexity Low_complexity 1 36 0 24 67 0 0 chr3 112927402 112927447 -105109711 + AT_rich Low_complexity Low_complexity 1 45 0 16838 96 3 9 chr3 112927578 112930839 -105106319 - L1PA7 LINE L1 -3 6151 2905 5838 104 81 112 chr3 112930839 112932428 -105104730 + pTR5 LTR ERV1 744 2438 0 10887 118 1 7 chr3 112932431 112934097 -105103061 - L1PA7 LINE L1 -3237 2909 1254 934 226 55 14 chr3 112934119 112934336 -105102822 - MLT1A1 LTR MaLR -138 227 2 1087 278 112 11 chr3 112934340 112934689 -105102469 + MLT1F LTR MaLR 159 542 0 2361 112 0 0 chr3 112935144 112935456 -105101702 - AluSq SINE Alu -1 312 1 2369 92 0 0 chr3 112936152 112936447 -105100711 + AluSc SINE Alu 3 297 -12 1207 248 98 67 chr3 112937699 112937860 -105099298 - L2 LINE L2 0 3313 3158 317 80 0 20 chr3 112937860 112937910 -105099248 + (CA)n Simple_repeat Simple_repeat 2 50 0 1207 248 98 67 chr3 112937910 112938640 -105098518 - L2 LINE L2 -155 3158 2397 695 281 122 30 chr3 112938937 112939240 -105097918 - LTR33 LTR ERVL -165 356 26 229 230 27 40 chr3 112939274 112939348 -105097810 + MLT1L LTR MaLR 397 469 -146 1857 224 36 28 chr3 112939404 112939696 -105097462 - L1MD3 LINE L1 -10 7985 7686 2200 118 0 3 chr3 112939696 112939993 -105097165 - AluSq SINE Alu -17 296 1 1857 224 36 28 chr3 112939993 112940196 -105096962 - L1MD3 LINE L1 -309 7686 7486 396 307 101 18 chr3 112940878 112941096 -105096062 - L3 LINE CR1 -880 697 462 351 299 24 24 chr3 112941322 112941449 -105095709 - MLT1I LTR MaLR -231 178 52 1071 259 73 6 chr3 112941584 112941901 -105095257 - MER58B DNA MER1_type -3 338 1 358 290 58 39 chr3 112942135 112942290 -105094868 - MIR SINE MIR -56 206 49 2191 125 0 0 chr3 112942475 112942786 -105094372 + AluSx SINE Alu 2 312 0 389 280 93 64 chr3 112944252 112944673 -105092485 + L1MC4a LINE L1 5576 6008 -113 903 150 6 124 chr3 112945161 112945504 -105091654 - L1MA9 LINE L1 -221 5950 5675 7018 223 11 7 chr3 112945505 112947393 -105089765 + L1 LINE L1 1852 3736 -2410 506 50 22 82 chr3 113147393 113147575 -104889583 + (TA)n Simple_repeat Simple_repeat 1 171 0 419 125 100 6 chr3 113147589 113147749 -104889409 + (TATAG)n Simple_repeat Simple_repeat 1 175 0 368 60 49 71 chr3 113147751 113147935 -104889223 + (TA)n Simple_repeat Simple_repeat 1 180 0 516 81 5 96 chr3 113147949 113148146 -104889012 + (TA)n Simple_repeat Simple_repeat 2 180 0 7800 42 5 3 chr3 113148537 113149724 -104887434 - L1P1 LINE L1 -563 5592 4403 372 313 12 0 chr3 113149869 113150029 -104887129 + (TA)n Simple_repeat Simple_repeat 2 163 0 22 35 0 0 chr3 113150082 113150111 -104887047 + AT_rich Low_complexity Low_complexity 1 29 0 2412 71 0 3 chr3 113150119 113150429 -104886729 + AluY SINE Alu 1 309 -2 288 340 19 0 chr3 113151326 113151429 -104885729 + MIR SINE MIR 36 140 -68 342 321 25 25 chr3 113151603 113151765 -104885393 - MER5B DNA MER1_type -3 175 14 351 78 0 0 chr3 113152067 113152118 -104885040 + (GA)n Simple_repeat Simple_repeat 2 52 0 442 229 145 8 chr3 113152340 113152471 -104884687 - MER45 DNA AcHobo -5 1576 1428 963 178 38 5 chr3 113152502 113152715 -104884443 - L1MD1 LINE L1 -1 6241 6022 1500 138 26 1 chr3 113152823 113153202 -104883956 - L1P5 LINE L1 -650 5501 5115 1549 124 102 102 chr3 113153241 113153605 -104883553 + THE1B LTR MaLR 1 364 0 487 92 0 0 chr3 113153605 113153670 -104883488 + THE1B-int LTR MaLR 1 65 -1515 1329 156 12 41 chr3 113153670 113153913 -104883245 + THE1B LTR MaLR 56 291 -73 2680 207 21 45 chr3 113154012 113154824 -104882334 + L1MD2 LINE L1 5099 5899 -460 978 191 143 9 chr3 113154934 113155144 -104882014 - MSTA LTR MaLR -188 240 3 281 56 0 0 chr3 113155144 113155180 -104881978 - MSTA LTR MaLR -392 36 1 3745 179 27 5 chr3 113155186 113155956 -104881202 + L1MA4 LINE L1 5513 6299 -1 324 311 40 34 chr3 113157249 113157397 -104879761 + L2 LINE L2 1898 2046 -1268 191 293 128 23 chr3 113157441 113157574 -104879584 + L2 LINE L2 2043 2189 -1125 314 320 94 39 chr3 113157574 113157777 -104879381 + L2 LINE L2 2333 2546 -768 253 365 146 0 chr3 113158102 113158294 -104878864 + MIR SINE MIR 33 252 -10 441 236 103 30 chr3 113160207 113160372 -104876786 + MLT1F1 LTR MaLR 386 562 -5 2581 102 17 59 chr3 113160574 113161034 -104876124 - HERVH LTR ERV1 -5664 2049 1609 5459 186 18 31 chr3 113161034 113162223 -104874935 - L1P LINE L1 -1794 4352 3180 6448 30 0 0 chr3 113162354 113163115 -104874043 - L1PA4 LINE L1 -3 6152 5392 1738 40 22 0 chr3 113163111 113163338 -104873820 + L1PA4 LINE L1 5172 5403 -743 * 24 0 0 0 chr3 113163339 113163363 -104873795 + AT_rich Low_complexity Low_complexity 1 24 0 1658 178 101 32 chr3 113164529 113165044 -104872114 - MLT2A2 LTR ERVL 0 554 2 568 228 24 0 chr3 113165044 113165171 -104871987 - FRAM SINE Alu -31 145 16 307 284 99 57 chr3 113165981 113166122 -104871036 + MIR3 SINE MIR 34 180 -28 185 32 0 65 chr3 113166162 113166193 -104870965 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 4006 23 8 0 chr3 113166197 113166669 -104870489 - L1PA3 LINE L1 -4 6151 5676 240 200 18 18 chr3 113166847 113166902 -104870256 + (CCA)n Simple_repeat Simple_repeat 2 56 0 1541 149 10 14 chr3 113166921 113167209 -104869949 + AluSp SINE Alu 1 287 -26 1477 197 37 10 chr3 113168104 113168403 -104868755 - AluJb SINE Alu -1 311 5 318 272 78 126 chr3 113169039 113169436 -104867722 + L1ME4a LINE L1 5501 5878 -243 253 276 63 55 chr3 113169452 113169579 -104867579 + MIR SINE MIR 105 232 -30 1615 184 75 22 chr3 113170277 113170597 -104866561 - MER1B DNA MER1_type 0 337 1 216 0 0 0 chr3 113171755 113171779 -104865379 + (TTAGGG)n Simple_repeat Simple_repeat 5 28 0 244 287 78 26 chr3 113171956 113172071 -104865087 + MIR SINE MIR 84 204 -58 26 64 0 0 chr3 113172090 113172137 -104865021 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr3 113172403 113172425 -104864733 + AT_rich Low_complexity Low_complexity 1 22 0 2018 92 46 3 chr3 113172584 113172868 -104864290 + AluY SINE Alu 1 296 -15 25 51 0 0 chr3 113172900 113172939 -104864219 + AT_rich Low_complexity Low_complexity 1 39 0 1589 215 111 13 chr3 113173022 113173417 -104863741 + MLT1C LTR MaLR 1 434 -33 971 201 0 0 chr3 113173418 113173597 -104863561 - Tigger1 DNA MER2_type 0 2418 2240 787 209 13 0 chr3 113173586 113173739 -104863419 - Tigger1 DNA MER2_type -2263 155 1 * 304 299 130 7 chr3 113174581 113174735 -104862423 - MIR SINE MIR -37 225 53 2242 190 26 2 chr3 113174737 113175159 -104861999 - MSTB1 LTR MaLR 0 432 1 276 53 0 0 chr3 113175183 113175221 -104861937 + (CA)n Simple_repeat Simple_repeat 2 39 0 45 34 0 0 chr3 113176242 113176301 -104860857 + AT_rich Low_complexity Low_complexity 1 59 0 878 25 158 0 chr3 113176550 113176670 -104860488 - MER85 DNA T2_type 0 139 1 312 218 69 35 chr3 113177848 113177935 -104859223 - L1MC4 LINE L1 -1339 6703 6614 303 235 41 31 chr3 113177862 113177960 -104859198 + L1MC4 LINE L1 6614 6712 -1330 * 24 0 0 0 chr3 113178021 113178045 -104859113 + AT_rich Low_complexity Low_complexity 1 24 0 27 62 0 0 chr3 113178089 113178137 -104859021 + AT_rich Low_complexity Low_complexity 1 48 0 257 352 0 11 chr3 113179320 113179411 -104857747 + L2 LINE L2 3205 3294 -19 558 156 21 0 chr3 113179617 113179713 -104857445 - L1PB4 LINE L1 0 6156 6059 584 137 0 39 chr3 113179715 113179817 -104857341 - L1 LINE L1 -1168 4978 4881 403 243 14 74 chr3 113180705 113180901 -104856257 + MER3 DNA MER1_type 1 144 -65 1272 165 13 4 chr3 113180902 113181139 -104856019 - L1MC3 LINE L1 -68 7717 7479 783 267 18 13 chr3 113181145 113181370 -104855788 + MLT2B1 LTR ERVL 10 235 -285 923 190 63 15 chr3 113181383 113181588 -104855570 - L1MC3 LINE L1 -481 7304 7090 3267 195 61 15 chr3 113181623 113182413 -104854745 + LTR1B LTR ERV1 1 826 0 23 0 0 0 chr3 113184135 113184158 -104853000 + AT_rich Low_complexity Low_complexity 1 23 0 817 204 84 0 chr3 113184158 113184349 -104852809 + MER2 DNA MER2_type 138 344 -1 336 64 0 0 chr3 113184350 113184397 -104852761 + (TG)n Simple_repeat Simple_repeat 2 48 0 457 335 90 0 chr3 113184524 113184724 -104852434 - MIR SINE MIR -10 252 35 607 296 86 44 chr3 113184772 113185157 -104852001 + MER57A LTR ERV1 3 403 0 697 214 28 112 chr3 113185771 113185824 -104851334 - MLT2D LTR ERVL -126 288 232 324 0 0 0 chr3 113185824 113185860 -104851298 + (CAA)n Simple_repeat Simple_repeat 2 37 0 697 214 28 112 chr3 113185860 113186091 -104851067 - MLT2D LTR ERVL -182 232 28 757 181 97 18 chr3 113186098 113186341 -104850817 - MSTA LTR MaLR -101 274 3 2296 246 56 61 chr3 113186352 113187689 -104849469 - L1M2 LINE L1 -4221 1814 475 34 42 0 0 chr3 113188984 113189032 -104848126 + AT_rich Low_complexity Low_complexity 1 48 0 194 294 33 33 chr3 113190136 113190228 -104846930 - MIR SINE MIR -70 192 101 24 32 0 0 chr3 113190273 113190304 -104846854 + AT_rich Low_complexity Low_complexity 1 31 0 1427 240 100 57 chr3 113190376 113191147 -104846011 - MER63C DNA MER1_type -43 887 84 561 357 34 24 chr3 113191125 113191422 -104845736 - MLT1K LTR MaLR -186 402 103 * 9316 267 21 12 chr3 113191423 113194465 -104842693 + L1PA15-16 LINE L1 2647 5717 -1132 959 280 55 9 chr3 113194598 113195174 -104841984 + L1M1 LINE L1 3360 3968 -3597 419 337 62 55 chr3 113195286 113195559 -104841599 + LTR33 LTR ERVL 247 521 0 29 78 0 0 chr3 113195672 113195736 -104841422 + AT_rich Low_complexity Low_complexity 1 64 0 25647 47 24 1 chr3 113195900 113200285 -104836873 + L1P LINE L1 1 4523 -1623 1517 127 18 0 chr3 113200386 113200615 -104836543 + AluSg/x SINE Alu 73 305 -5 383 130 0 0 chr3 113200616 113200670 -104836488 - THE1B LTR MaLR -200 164 111 2454 194 51 74 chr3 113200670 113201468 -104835690 - LTR17 LTR ERV1 0 780 1 22 35 0 0 chr3 113202183 113202212 -104834946 + AT_rich Low_complexity Low_complexity 1 29 0 371 288 114 68 chr3 113203572 113203791 -104833367 + LTR33 LTR ERVL 15 243 -278 805 176 0 0 chr3 113204208 113204339 -104832819 - LTR17 LTR ERV1 -204 576 446 1858 197 8 11 chr3 113205332 113205698 -104831460 + MLT1A1 LTR MaLR 1 365 0 7489 89 2 0 chr3 113205767 113207632 -104829526 + L1PA7 LINE L1 4277 6152 -2 180 0 0 0 chr3 113208623 113208643 -104828515 + (CA)n Simple_repeat Simple_repeat 1 20 0 226 312 0 11 chr3 113209157 113209250 -104827908 + GA-rich Low_complexity Low_complexity 1 92 0 234 188 0 0 chr3 113209250 113209298 -104827860 + (TA)n Simple_repeat Simple_repeat 2 49 0 28 61 0 0 chr3 113210662 113210711 -104826447 + AT_rich Low_complexity Low_complexity 1 49 0 7107 48 10 0 chr3 113211375 113212519 -104824639 - L1PA5 LINE L1 -8 6146 4999 617 255 36 88 chr3 113212567 113212818 -104824340 + MIR SINE MIR 3 240 -22 326 359 71 5 chr3 113212901 113213085 -104824073 - L2 LINE L2 -199 3114 2919 799 179 112 5 chr3 113213090 113213286 -104823872 - L1 LINE L1 -2073 4073 3857 286 356 9 0 chr3 113213301 113213416 -104823742 - MIR SINE MIR -37 225 110 3769 196 69 49 chr3 113213421 113213490 -104823668 + L1MA10 LINE L1 5231 5297 -1037 183 42 0 0 chr3 113213490 113213514 -104823644 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 3769 196 69 49 chr3 113213514 113214491 -104822667 + L1MA10 LINE L1 5297 6294 -40 575 179 34 0 chr3 113214503 113214620 -104822538 - L1MA7 LINE L1 -11 6280 6160 604 188 8 8 chr3 113214675 113214808 -104822350 + L1MB1 LINE L1 6036 6168 0 352 289 72 28 chr3 113214888 113215068 -104822090 - L2 LINE L2 -426 2888 2701 225 282 13 0 chr3 113215648 113215726 -104821432 + LTR37B LTR ERV1 198 276 -192 986 197 0 0 chr3 113215777 113215975 -104821183 + L1PB1 LINE L1 3 200 -6663 4663 119 12 4 chr3 113215979 113217247 -104819911 + L1PB1 LINE L1 639 2061 -4802 1994 171 36 14 chr3 113217247 113217603 -104819555 + THE1B LTR MaLR 1 364 0 10878 111 21 3 chr3 113217603 113219142 -104818016 + THE1B-int LTR MaLR 15 1580 0 1823 194 36 14 chr3 113219142 113219498 -104817660 + THE1B LTR MaLR 1 364 0 8792 213 43 8 chr3 113219498 113223677 -104813481 + L1PB1 LINE L1 2057 6529 -338 345 24 0 0 chr3 113223677 113223719 -104813439 + (CA)n Simple_repeat Simple_repeat 2 43 0 8792 213 43 8 chr3 113223719 113224024 -104813134 + L1PB1 LINE L1 6529 6822 -45 292 286 24 101 chr3 113224588 113224756 -104812402 - MIR SINE MIR -56 206 52 496 305 192 24 chr3 113224838 113225269 -104811889 - L2 LINE L2 0 3313 2744 1867 133 0 0 chr3 113225269 113225540 -104811618 + AluSx SINE Alu 1 271 -41 496 305 192 24 chr3 113225540 113225702 -104811456 - L2 LINE L2 -569 2744 2611 211 355 59 30 chr3 113226627 113226830 -104810328 + MIR SINE MIR 51 259 -3 237 33 0 0 chr3 113227027 113227057 -104810101 + (TC)n Simple_repeat Simple_repeat 1 30 0 24 0 0 0 chr3 113227138 113227162 -104809996 + AT_rich Low_complexity Low_complexity 1 24 0 1685 134 4 12 chr3 113227845 113228098 -104809060 + AluSq SINE Alu 1 251 -62 206 314 41 50 chr3 113229843 113229964 -104807194 + MER5A DNA MER1_type 69 188 -1 264 318 159 45 chr3 113230958 113231134 -104806024 + MIR SINE MIR 29 224 -38 2317 119 0 0 chr3 113231592 113231904 -104805254 - AluSx SINE Alu 0 312 1 711 261 65 26 chr3 113232481 113232787 -104804371 - L1M4 LINE L1 -1238 4908 4591 371 231 0 0 chr3 113233390 113233481 -104803677 - MER103 DNA DNA -74 92 2 384 240 30 0 chr3 113233542 113233642 -104803516 + MER5A DNA MER1_type 10 112 -77 24 91 0 0 chr3 113233729 113233795 -104803363 + AT_rich Low_complexity Low_complexity 1 66 0 598 350 64 50 chr3 113234360 113234863 -104802295 + LTR67 LTR ERVL 42 551 -6 1096 323 32 5 chr3 113235692 113236061 -104801097 + LTR33 LTR ERVL 143 521 0 2422 42 42 0 chr3 113236332 113236621 -104800537 + AluY SINE Alu 1 301 -10 3395 184 9 8 chr3 113237267 113237913 -104799245 - L1MB3 LINE L1 -11 6172 5526 541 130 20 10 chr3 113238570 113238670 -104798488 - L1PA10 LINE L1 -1 6167 6067 2866 6 0 0 chr3 113239534 113239845 -104797313 - AluYa5 SINE Alu 0 311 1 265 216 118 10 chr3 113240947 113241049 -104796109 - LTR48B LTR ERV1 -75 569 457 3249 212 26 69 chr3 113241058 113242071 -104795087 - LTR5 LTR ERVK 0 969 1 509 343 130 36 chr3 113243092 113243723 -104793435 + L2 LINE L2 2485 3189 -124 217 359 29 19 chr3 113243734 113243837 -104793321 + MIR SINE MIR 12 115 -147 244 139 0 47 chr3 113244259 113244302 -104792856 - MIR SINE MIR -111 151 111 244 329 49 24 chr3 113244344 113244508 -104792650 - L1MC/D LINE L1 -2052 5756 5589 30 59 0 0 chr3 113244727 113244778 -104792380 + AT_rich Low_complexity Low_complexity 1 51 0 31 0 0 0 chr3 113245371 113245402 -104791756 + AT_rich Low_complexity Low_complexity 1 31 0 228 200 0 18 chr3 113245414 113245469 -104791689 + L1MC4 LINE L1 6649 6702 -1340 * 241 200 0 0 chr3 113245447 113245502 -104791656 - L1MC4 LINE L1 -1340 6702 6648 1398 196 0 58 chr3 113246787 113247114 -104790044 - AluJo SINE Alu -4 308 1 295 279 81 18 chr3 113248013 113248124 -104789034 + MIR SINE MIR 31 148 -114 1077 175 31 31 chr3 113248398 113248621 -104788537 - MLT1D LTR MaLR 0 505 283 1633 111 201 7 chr3 113248623 113248912 -104788246 + MSTA LTR MaLR 84 428 0 236 344 160 46 chr3 113248953 113249346 -104787812 - L2 LINE L2 0 3313 2876 322 264 84 25 chr3 113249477 113249716 -104787442 + L1MC1 LINE L1 5576 5828 -293 1156 157 15 10 chr3 113249716 113249920 -104787238 + L1PB4 LINE L1 5939 6143 -13 5299 84 17 4 chr3 113250046 113250795 -104786363 + L1PB1 LINE L1 5389 6147 -4 24 0 0 0 chr3 113250795 113250819 -104786339 + AT_rich Low_complexity Low_complexity 1 24 0 1558 198 3 33 chr3 113251560 113251889 -104785269 + L1MC1 LINE L1 6009 6327 -6 219 400 96 0 chr3 113252258 113252383 -104784775 + L2 LINE L2 2916 3052 -220 486 202 0 12 chr3 113252606 113252690 -104784468 + MSTB1 LTR MaLR 22 104 -353 1048 251 59 57 chr3 113253209 113253563 -104783595 + MSTB1 LTR MaLR 78 432 0 195 233 0 0 chr3 113253845 113253888 -104783270 + MIR SINE MIR 75 117 -145 8967 108 19 4 chr3 113254177 113255107 -104782051 + HSMAR1 DNA Mariner 1 957 -330 2020 90 3 0 chr3 113255107 113255395 -104781763 + L1PA8 LINE L1 5881 6169 -3 8967 108 19 4 chr3 113255395 113255732 -104781426 + HSMAR1 DNA Mariner 957 1287 0 180 0 0 0 chr3 113255748 113255768 -104781390 + (TA)n Simple_repeat Simple_repeat 2 21 0 242 299 110 8 chr3 113256142 113256269 -104780889 + MIR SINE MIR 111 250 -12 890 176 29 5 chr3 113256425 113256630 -104780528 + L1MA8 LINE L1 6082 6291 0 366 80 0 0 chr3 113256856 113256906 -104780252 + (CA)n Simple_repeat Simple_repeat 1 50 0 206 160 20 0 chr3 113256963 113257013 -104780145 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 203 238 25 12 chr3 113257018 113257098 -104780060 + (TA)n Simple_repeat Simple_repeat 1 81 0 660 276 68 26 chr3 113257177 113257423 -104779735 - MIR SINE MIR -5 257 1 204 313 84 61 chr3 113257479 113257610 -104779548 - MIR SINE MIR -108 154 21 243 174 43 0 chr3 113258402 113258448 -104778710 + AluJb SINE Alu 1 48 -253 21 57 0 0 chr3 113258489 113258524 -104778634 + AT_rich Low_complexity Low_complexity 1 35 0 1271 161 54 9 chr3 113258586 113258810 -104778348 + AluJb SINE Alu 58 291 -21 7675 197 15 11 chr3 113258826 113261241 -104775917 - L1PB4 LINE L1 -11 6145 3712 2127 213 0 34 chr3 113261251 113261754 -104775404 + L1PB4 LINE L1 3240 3725 -2421 2929 73 62 2 chr3 113261761 113262184 -104774974 + LTR7 LTR ERV1 1 448 -2 528 16 0 0 chr3 113262897 113262958 -104774200 + (TG)n Simple_repeat Simple_repeat 2 62 0 517 308 24 0 chr3 113263692 113263861 -104773297 + MER5B DNA MER1_type 6 178 0 22 0 0 0 chr3 113263931 113263953 -104773205 + AT_rich Low_complexity Low_complexity 1 22 0 462 250 230 7 chr3 113264601 113264753 -104772405 + L1M4 LINE L1 169 354 -6188 * 1540 219 69 11 chr3 113264721 113265344 -104771814 + L1MC3 LINE L1 7500 8270 -13 22 56 0 0 chr3 113265377 113265413 -104771745 + AT_rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr3 113265428 113265461 -104771697 + AT_rich Low_complexity Low_complexity 1 33 0 23 97 0 0 chr3 113265482 113265554 -104771604 + AT_rich Low_complexity Low_complexity 1 72 0 385 353 17 0 chr3 113266250 113266423 -104770735 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 21 0 0 0 chr3 113267033 113267054 -104770104 + AT_rich Low_complexity Low_complexity 1 21 0 2012 121 0 22 chr3 113267146 113267460 -104769698 + AluSx SINE Alu 1 307 -5 1711 266 19 51 chr3 113267724 113268627 -104768531 - L1M4 LINE L1 -1339 4807 3954 360 132 41 8 chr3 113268627 113268748 -104768410 + (TA)n Simple_repeat Simple_repeat 1 125 0 345 178 0 0 chr3 113268755 113268828 -104768330 - L1M4 LINE L1 -2199 3947 3875 186 347 40 81 chr3 113269475 113269648 -104767510 - L2 LINE L2 -189 3083 2918 232 337 11 0 chr3 113270571 113270663 -104766495 + L2 LINE L2 2904 2996 -276 245 280 32 32 chr3 113270770 113270863 -104766295 + MIR SINE MIR 170 262 0 369 251 189 6 chr3 113271224 113271414 -104765744 - MIR SINE MIR -1 261 40 717 228 8 95 chr3 113271594 113271835 -104765323 + LTR37A LTR ERV1 18 237 -189 214 295 161 18 chr3 113272631 113272743 -104764415 - MIR SINE MIR -7 255 128 186 345 17 26 chr3 113273410 113273526 -104763632 - MIR SINE MIR -56 206 92 5056 169 29 4 chr3 113274198 113275097 -104762061 + HSMAR2 DNA Mariner 330 1250 -52 1043 290 27 47 chr3 113275097 113275576 -104761582 - L1M2 LINE L1 -6408 760 3 208 143 0 0 chr3 113275667 113275702 -104761456 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 250 254 0 0 chr3 113275716 113275783 -104761375 + (TA)n Simple_repeat Simple_repeat 1 67 0 183 167 104 21 chr3 113277037 113277085 -104760073 + L2 LINE L2 3262 3313 0 21 0 0 0 chr3 113277178 113277199 -104759959 + AT_rich Low_complexity Low_complexity 1 21 0 708 271 5 48 chr3 113277413 113277620 -104759538 - MER58A DNA MER1_type -1 223 26 507 275 111 29 chr3 113279267 113279749 -104757409 - MER20B DNA MER1_type 0 783 226 277 372 31 49 chr3 113279795 113280018 -104757140 - MER20B DNA MER1_type -562 221 3 25 31 0 0 chr3 113280483 113280515 -104756643 + AT_rich Low_complexity Low_complexity 1 32 0 201 302 9 9 chr3 113280661 113280767 -104756391 + (TA)n Simple_repeat Simple_repeat 2 107 0 209 343 14 14 chr3 113280842 113280915 -104756243 - L2 LINE L2 -49 3264 3192 226 335 35 58 chr3 113281466 113281639 -104755519 + MLT1K LTR MaLR 9 177 -411 3913 124 55 11 chr3 113282837 113283025 -104754133 + L1PB2 LINE L1 5464 5642 -509 1410 182 146 9 chr3 113283025 113283355 -104753803 + THE1C LTR MaLR 1 375 0 3913 124 55 11 chr3 113283355 113283821 -104753337 + L1PB2 LINE L1 5642 6147 -4 296 180 33 0 chr3 113283986 113284047 -104753111 + HsTC2 DNA Tc2 11 73 -1825 272 145 29 14 chr3 113284060 113284129 -104753029 - L1M LINE L1 -970 5330 5261 1243 120 0 34 chr3 113284229 113284438 -104752720 + HERVH LTR ERV1 2794 2995 -4718 * 8471 121 7 7 chr3 113284417 113286488 -104750670 + HERVH LTR ERV1 3140 5149 -2287 1169 144 58 0 chr3 113286489 113286697 -104750461 + HERVH LTR ERV1 5600 5819 -1894 * 2273 104 62 13 chr3 113286695 113287069 -104750089 + HERVH LTR ERV1 7322 7713 0 2596 80 97 7 chr3 113287069 113287480 -104749678 + LTR7 LTR ERV1 1 448 -2 24 0 0 0 chr3 113287824 113287848 -104749310 + AT_rich Low_complexity Low_complexity 1 24 0 210 314 95 45 chr3 113288779 113288983 -104748175 + MIR SINE MIR 34 248 -14 379 336 149 12 chr3 113289346 113289587 -104747571 - L2 LINE L2 -194 3119 2846 1489 146 18 33 chr3 113289961 113290236 -104746922 - L1PB1 LINE L1 -2 6149 5879 32 26 0 0 chr3 113290236 113290275 -104746883 + AT_rich Low_complexity Low_complexity 1 39 0 4017 152 7 7 chr3 113290276 113291250 -104745908 - L1PB1 LINE L1 -268 5883 4909 958 191 83 66 chr3 113291301 113291542 -104745616 - MER68 LTR ERV1 -2 560 316 384 174 10 10 chr3 113291547 113291645 -104745513 - L1PB1 LINE L1 -1647 4499 4402 1350 207 57 4 chr3 113291654 113291934 -104745224 - MER68 LTR ERV1 -257 305 11 189 211 0 167 chr3 113292699 113292789 -104744369 - MIR SINE MIR -158 104 30 645 288 58 96 chr3 113292855 113293594 -104743564 - L2 LINE L2 -6 3307 2606 351 306 68 52 chr3 113294738 113294990 -104742168 - MIR SINE MIR -3 259 4 753 161 24 8 chr3 113297522 113297646 -104739512 - MSTB LTR MaLR 0 426 301 27 0 0 0 chr3 113299768 113299795 -104737363 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr3 113299928 113299950 -104737208 + AT_rich Low_complexity Low_complexity 1 22 0 1301 281 67 5 chr3 113301864 113302313 -104734845 + L1MD2 LINE L1 693 1169 -5240 219 143 26 65 chr3 113302394 113302471 -104734687 + (TATATG)n Simple_repeat Simple_repeat 5 78 0 389 308 0 8 chr3 113302482 113302615 -104734543 + L1MD2 LINE L1 4224 4355 -2051 2420 254 68 37 chr3 113303414 113303958 -104733200 + L1MD2 LINE L1 4355 4881 -1738 1297 252 0 13 chr3 113303958 113304271 -104732887 + AluJo SINE Alu 1 309 -3 2420 254 68 37 chr3 113304271 113305236 -104731922 + L1MD2 LINE L1 4881 5909 -710 2179 167 8 5 chr3 113305242 113305763 -104731395 + HERV3 LTR ERV1 7211 7811 -2 1771 223 46 3 chr3 113305840 113305921 -104731237 + LTR2 LTR ERV1 42 118 -331 333 0 0 0 chr3 113305921 113305958 -104731200 + (TAA)n Simple_repeat Simple_repeat 2 38 0 1771 223 46 3 chr3 113305958 113306267 -104730891 + LTR2 LTR ERV1 118 449 0 1116 269 69 7 chr3 113306274 113306679 -104730479 + L1MD2 LINE L1 5919 6348 -271 947 212 50 57 chr3 113306686 113306983 -104730175 - L1PB1 LINE L1 -2080 4066 3772 1943 139 3 7 chr3 113306991 113307292 -104729866 - AluSg SINE Alu -10 300 1 1855 246 20 83 chr3 113307295 113307499 -104729659 - L1M4 LINE L1 -3111 3846 3631 326 80 20 0 chr3 113307499 113307549 -104729609 + (TA)n Simple_repeat Simple_repeat 2 52 0 1855 246 20 83 chr3 113307549 113307564 -104729594 - L1M4 LINE L1 -3326 3631 3617 1458 188 38 41 chr3 113307564 113307856 -104729302 - AluJo SINE Alu -21 291 1 1855 246 20 83 chr3 113307856 113308777 -104728381 - L1M4 LINE L1 -3340 3617 2787 955 253 74 80 chr3 113308789 113309737 -104727421 + L1M4 LINE L1 2635 3576 -2570 480 248 81 78 chr3 113309833 113310155 -104727003 - L1M4 LINE L1 -5324 1535 1213 1397 182 57 9 chr3 113310179 113310514 -104726644 - L1MA4 LINE L1 -1 6299 5949 316 200 0 0 chr3 113410534 113410584 -104626574 + T-rich Low_complexity Low_complexity 1 50 0 210 114 57 23 chr3 113410606 113410694 -104626464 + (GTGTG)n Simple_repeat Simple_repeat 2 92 0 188 125 56 14 chr3 113410708 113410780 -104626378 + (TTGTG)n Simple_repeat Simple_repeat 4 78 0 182 148 0 0 chr3 113412730 113412757 -104624401 - MIR SINE MIR -155 107 81 252 164 30 0 chr3 113413892 113413959 -104623199 + Charlie7 DNA MER1_type 78 146 -2466 665 231 160 14 chr3 113413979 113414261 -104622897 + Charlie7 DNA MER1_type 395 717 -1895 664 75 0 11 chr3 113414843 113414937 -104622221 - MER47A DNA MER2_type -194 172 80 415 88 18 0 chr3 113414964 113415021 -104622137 + Alu SINE Alu 230 287 -22 264 240 34 99 chr3 113415022 113415123 -104622035 - L1MC/D LINE L1 -589 5575 5491 2496 58 0 0 chr3 113415153 113415462 -104621696 - AluY SINE Alu -2 309 1 798 176 139 27 chr3 113415774 113415961 -104621197 - MER20B DNA MER1_type -7 212 5 216 281 24 61 chr3 113417264 113417346 -104619812 + L2 LINE L2 3177 3255 -58 205 351 15 61 chr3 113417447 113417578 -104619580 - L2 LINE L2 -5 3267 3143 1974 82 0 0 chr3 113418275 113418568 -104618590 - AluSg SINE Alu 0 331 39 388 291 37 30 chr3 113419470 113419604 -104617554 - MIR SINE MIR -123 139 5 337 256 0 12 chr3 113420043 113420125 -104617033 + LTR67 LTR ERVL 475 555 -2 2515 173 7 2 chr3 113420489 113420905 -104616253 + MER47B DNA MER2_type 1 418 0 367 140 0 0 chr3 113421894 113421951 -104615207 - AluSg SINE Alu -246 57 1 225 163 93 0 chr3 113421951 113421994 -104615164 - MSTC LTR MaLR -380 48 2 327 49 0 0 chr3 113422509 113422550 -104614608 + (CA)n Simple_repeat Simple_repeat 2 42 0 210 91 0 0 chr3 113422550 113422583 -104614575 + (GA)n Simple_repeat Simple_repeat 1 33 0 435 105 70 23 chr3 113422617 113422703 -104614455 - MLT1D LTR MaLR 0 505 416 394 325 52 19 chr3 113422945 113423099 -104614059 + MIR SINE MIR 23 181 -81 332 322 41 74 chr3 113423197 113423467 -104613691 + HAL1 LINE L1 21 281 -2226 2117 164 26 3 chr3 113423484 113423861 -104613297 + L1MC1 LINE L1 5943 6328 -5 752 265 94 44 chr3 113423881 113423927 -104613231 + HAL1 LINE L1 1048 1090 -1417 2197 91 35 0 chr3 113423927 113424213 -104612945 - AluSx SINE Alu -16 296 1 752 265 94 44 chr3 113424213 113424550 -104612608 + HAL1 LINE L1 1090 1409 -1098 180 97 0 0 chr3 113424550 113424581 -104612577 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 752 265 94 44 chr3 113424581 113424598 -104612560 + HAL1 LINE L1 1409 1424 -1083 2597 82 11 6 chr3 113424598 113424963 -104612195 + L1PA8 LINE L1 5798 6164 -8 752 265 94 44 chr3 113424963 113425081 -104612077 + HAL1 LINE L1 1424 1594 -913 387 304 155 52 chr3 113425142 113425543 -104611615 - LTR67 LTR ERVL -93 464 23 24 0 0 0 chr3 113425594 113425618 -104611540 + AT_rich Low_complexity Low_complexity 1 24 0 1076 81 0 7 chr3 113425620 113425768 -104611390 - L1PA4 LINE L1 -3 6152 6006 1106 320 63 42 chr3 113425779 113425858 -104611300 + L2 LINE L2 2305 2381 -932 2044 120 155 11 chr3 113425858 113426232 -104610926 - MSTA LTR MaLR 0 428 1 1106 320 63 42 chr3 113426232 113426677 -104610481 + L2 LINE L2 2381 2815 -498 213 39 0 0 chr3 113426677 113426703 -104610455 + (TTTTC)n Simple_repeat Simple_repeat 2 27 0 2580 96 22 0 chr3 113426708 113427073 -104610085 - L1PA10 LINE L1 -5 6163 5791 1106 320 63 42 chr3 113427073 113427409 -104609749 + L2 LINE L2 2818 3264 -49 21 0 0 0 chr3 113427656 113427677 -104609481 + AT_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr3 113427706 113427736 -104609422 + (CA)n Simple_repeat Simple_repeat 1 30 0 661 243 22 0 chr3 113428657 113428793 -104608365 + LTR40b LTR ERVL 237 375 -87 35 0 0 0 chr3 113429175 113429210 -104607948 + AT_rich Low_complexity Low_complexity 1 35 0 6015 131 40 7 chr3 113429210 113429578 -104607580 - L1PB1 LINE L1 -2 6149 5795 459 0 0 0 chr3 113429578 113429629 -104607529 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 6015 131 40 7 chr3 113429629 113430526 -104606632 - L1PB1 LINE L1 -356 5795 4833 264 307 30 10 chr3 113430590 113430691 -104606467 + L2 LINE L2 2902 3004 -268 7227 35 9 3 chr3 113431372 113433063 -104604095 + L1PA4 LINE L1 4469 6153 -2 416 63 32 0 chr3 113435160 113435223 -104601935 + (TGAA)n Simple_repeat Simple_repeat 1 65 0 2006 97 0 4 chr3 113435650 113435907 -104601251 - AluSc SINE Alu -53 256 1 1965 164 38 0 chr3 113436148 113436515 -104600643 + L1MA8 LINE L1 5906 6286 -5 25 0 0 0 chr3 113436678 113436703 -104600455 + AT_rich Low_complexity Low_complexity 1 25 0 607 337 131 43 chr3 113436779 113437000 -104600158 + L2 LINE L2 2447 2647 -666 786 237 14 37 chr3 113437000 113437215 -104599943 - MER63A DNA MER1_type 0 210 1 607 337 131 43 chr3 113437215 113437781 -104599377 + L2 LINE L2 2647 3313 0 3815 142 50 28 chr3 113438960 113439701 -104597457 + L1MA8 LINE L1 5535 6291 0 236 54 54 0 chr3 113439704 113439741 -104597417 + GA-rich Low_complexity Low_complexity 3 41 0 2020 127 24 32 chr3 113439957 113440334 -104596824 - THE1C LTR MaLR -1 374 1 866 257 21 29 chr3 113440338 113440579 -104596579 - MIR SINE MIR -22 240 2 286 336 114 8 chr3 113440697 113440828 -104596330 + MIR3 SINE MIR 20 164 -44 2289 124 16 38 chr3 113441288 113441660 -104595498 - THE1B LTR MaLR 0 364 1 5313 170 19 2 chr3 113442052 113443262 -104593896 - L1PB4 LINE L1 -1 6155 4924 300 230 0 0 chr3 113443255 113443329 -104593829 - L1PB4 LINE L1 -1639 4507 4434 * 1014 304 37 3 chr3 113443923 113444222 -104592936 + MLT1J LTR MaLR 3 311 -200 207 0 0 0 chr3 113444411 113444434 -104592724 + (TG)n Simple_repeat Simple_repeat 2 24 0 26 50 0 0 chr3 113444858 113444898 -104592260 + AT_rich Low_complexity Low_complexity 1 40 0 549 0 0 0 chr3 113445759 113445820 -104591338 + (TA)n Simple_repeat Simple_repeat 2 62 0 7168 55 0 1 chr3 113447052 113448498 -104588660 - L1PA6 LINE L1 -2 6152 4710 477 0 0 0 chr3 113448658 113448711 -104588447 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 215 31 31 0 chr3 113448713 113448745 -104588413 + (TG)n Simple_repeat Simple_repeat 2 34 0 236 75 0 25 chr3 113449322 113449362 -104587796 + (TA)n Simple_repeat Simple_repeat 2 40 0 2037 128 0 3 chr3 113449362 113449652 -104587506 - AluSg SINE Alu -21 289 1 2202 113 0 10 chr3 113450820 113451130 -104586028 - AluSg SINE Alu -3 307 1 228 35 0 0 chr3 113451410 113451439 -104585719 + (CA)n Simple_repeat Simple_repeat 2 30 0 * 243 0 0 0 chr3 113451438 113451465 -104585693 + (GA)n Simple_repeat Simple_repeat 2 28 0 265 304 204 18 chr3 113451666 113451886 -104585272 - L2 LINE L2 -14 3299 3039 2174 221 93 16 chr3 113451886 113451956 -104585202 - L1MA10 LINE L1 -29 6305 6242 2349 128 19 8 chr3 113451956 113452316 -104584842 - THE1B LTR MaLR 0 364 1 2174 221 93 16 chr3 113452316 113452825 -104584333 - L1MA10 LINE L1 -92 6242 5681 289 260 55 55 chr3 113454753 113454880 -104582278 - MIR SINE MIR -19 243 117 248 303 73 28 chr3 113456259 113456368 -104580790 + MIR SINE MIR 70 183 -79 5288 164 43 9 chr3 113456994 113457479 -104579679 + L1MA9 LINE L1 4479 4946 -1366 1827 154 35 27 chr3 113457479 113457849 -104579309 - THE1C LTR MaLR 0 375 3 10370 113 29 10 chr3 113457851 113459401 -104577757 - THE1C-int LTR MaLR 0 1580 1 1857 138 46 35 chr3 113459401 113459772 -104577386 - THE1C LTR MaLR 0 375 1 5288 164 43 9 chr3 113459772 113461062 -104576096 + L1MA9 LINE L1 4945 6312 0 1547 57 0 0 chr3 113461306 113461500 -104575658 + L1PA3 LINE L1 5959 6152 -3 391 317 78 18 chr3 113463998 113464165 -104572993 + MIR3 SINE MIR 1 177 -31 250 371 11 0 chr3 113464442 113464531 -104572627 - MIR SINE MIR -89 119 30 29 0 0 0 chr3 113465335 113465364 -104571794 + AT_rich Low_complexity Low_complexity 1 29 0 227 296 78 70 chr3 113465671 113465813 -104571345 - MIR SINE MIR -100 162 20 303 338 42 52 chr3 113466783 113466996 -104570162 + MIR SINE MIR 2 212 -50 811 196 92 0 chr3 113467019 113467182 -104569976 - MER45A DNA AcHobo 0 178 1 661 363 18 12 chr3 113468464 113468795 -104568363 + LTR16B LTR ERVL 52 384 -80 206 79 53 0 chr3 113469202 113469240 -104567918 + CT-rich Low_complexity Low_complexity 2 41 0 487 173 0 0 chr3 113469566 113469641 -104567517 - MER2 DNA MER2_type 0 345 271 1651 166 10 7 chr3 113469846 113470141 -104567017 - L1PA16 LINE L1 -4 6162 5867 317 326 103 23 chr3 113471341 113471516 -104565642 - MIR SINE MIR -72 190 2 389 297 25 8 chr3 113472729 113472847 -104564311 + L2 LINE L2 3182 3301 -12 2337 99 50 14 chr3 113473255 113473617 -104563541 - THE1C LTR MaLR 0 375 1 448 290 25 27 chr3 113474005 113474266 -104562892 + L1ME LINE L1 5446 5708 -413 606 205 205 6 chr3 113474273 113474390 -104562768 + MLT2D LTR ERVL 226 318 -96 324 0 0 0 chr3 113474390 113474426 -104562732 + (TC)n Simple_repeat Simple_repeat 1 36 0 * 354 23 0 0 chr3 113474425 113474468 -104562690 + (CA)n Simple_repeat Simple_repeat 1 43 0 606 205 205 6 chr3 113474426 113474506 -104562652 + MLT2D LTR ERVL 318 412 -2 884 223 41 16 chr3 113474562 113474804 -104562354 - LTR16A1 LTR ERVL -1 456 209 1315 103 39 0 chr3 113474834 113475038 -104562120 + L1PA13 LINE L1 5952 6163 0 252 237 62 72 chr3 113475077 113475174 -104561984 - LTR16C LTR ERVL -317 174 79 438 325 44 15 chr3 113476103 113476309 -104560849 - MIR SINE MIR 0 262 51 311 246 164 0 chr3 113477974 113478084 -104559074 + MIR SINE MIR 81 208 -54 7413 47 0 0 chr3 113478331 113480012 -104557146 - L1PA4 LINE L1 0 6155 4469 264 307 30 10 chr3 113480693 113480794 -104556364 - L2 LINE L2 -268 3004 2902 6015 131 40 7 chr3 113480858 113481755 -104555403 + L1PB1 LINE L1 4833 5795 -356 495 0 0 0 chr3 113481755 113481810 -104555348 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 6015 131 40 7 chr3 113481810 113482178 -104554980 + L1PB1 LINE L1 5795 6149 -2 35 0 0 0 chr3 113482178 113482213 -104554945 + AT_rich Low_complexity Low_complexity 1 35 0 727 234 15 0 chr3 113482595 113482732 -104554426 - LTR40b LTR ERVL -87 375 237 324 0 0 0 chr3 113483653 113483689 -104553469 + (TG)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr3 113483718 113483739 -104553419 + AT_rich Low_complexity Low_complexity 1 21 0 1106 320 63 42 chr3 113483986 113484322 -104552836 - L2 LINE L2 -49 3264 2936 2580 96 22 0 chr3 113484322 113484687 -104552471 + L1PA10 LINE L1 5791 6163 -5 213 39 0 0 chr3 113484692 113484718 -104552440 + (GAAAA)n Simple_repeat Simple_repeat 2 27 0 1106 320 63 42 chr3 113484718 113485163 -104551995 - L2 LINE L2 -380 2933 2381 2025 123 155 11 chr3 113485163 113485537 -104551621 + MSTA LTR MaLR 1 428 0 1106 320 63 42 chr3 113485537 113485616 -104551542 - L2 LINE L2 -932 2381 2305 1063 101 0 0 chr3 113485627 113485776 -104551382 + L1PA2 LINE L1 6006 6154 -1 320 241 161 9 chr3 113485776 113485888 -104551270 - L2 LINE L2 -1172 2142 2014 1043 223 31 97 chr3 113485900 113486260 -104550898 + MER58B DNA MER1_type 3 337 -4 826 302 24 17 chr3 113486269 113486567 -104550591 - L2 LINE L2 -1297 2017 1718 269 235 34 17 chr3 113486908 113487027 -104550131 + (TA)n Simple_repeat Simple_repeat 2 122 0 22 80 0 0 chr3 113490487 113490537 -104546621 + AT_rich Low_complexity Low_complexity 1 50 0 1315 229 150 38 chr3 113491160 113491579 -104545579 + MLT2B1 LTR ERVL 5 470 -50 8039 121 8 2 chr3 113491581 113492767 -104544391 + HSMAR2 DNA Mariner 46 1239 -63 1401 147 37 5 chr3 113493166 113493384 -104543774 + L1PA15-16 LINE L1 1 225 -6624 445 327 66 22 chr3 113493435 113493798 -104543360 + L1M4 LINE L1 4228 4623 -1523 467 244 156 6 chr3 113494287 113494447 -104542711 + L1M4 LINE L1 3664 3847 -2299 12209 179 24 63 chr3 113494467 113497359 -104539799 + L1PA16 LINE L1 1 3003 -3866 565 143 0 31 chr3 113497359 113497457 -104539701 - LTR14B LTR ERVK -2 606 512 12209 179 24 63 chr3 113497457 113497496 -104539662 + L1PA16 LINE L1 3003 3042 -3827 923 154 0 13 chr3 113497496 113497645 -104539513 - LTR14B LTR ERVK -447 161 15 12209 179 24 63 chr3 113497645 113500493 -104536665 + L1PA16 LINE L1 3042 5998 -871 2395 97 3 0 chr3 113500493 113500804 -104536354 + AluSp SINE Alu 1 312 -1 12209 179 24 63 chr3 113500804 113501097 -104536061 + L1PA16 LINE L1 5998 6301 -568 2793 13 0 0 chr3 113501097 113501404 -104535754 + AluYa5 SINE Alu 1 307 -4 12209 179 24 63 chr3 113501404 113501950 -104535208 + L1PA16 LINE L1 6301 6868 -1 34 0 0 0 chr3 113502173 113502207 -104534951 + AT_rich Low_complexity Low_complexity 1 34 0 343 287 83 61 chr3 113502851 113503032 -104534126 + LTR33A LTR ERVL 8 192 -331 2117 101 3 7 chr3 113503130 113503483 -104533675 - AluSp SINE Alu 0 352 1 438 197 8 68 chr3 113504270 113504387 -104532771 - MLT1K LTR MaLR -70 518 409 294 116 0 0 chr3 113504651 113504694 -104532464 + L1ME3 LINE L1 5672 5714 -448 851 144 8 0 chr3 113504705 113504837 -104532321 - THE1B LTR MaLR 0 375 243 4401 127 65 32 chr3 113504837 113505596 -104531562 - LTR25 LTR ERV1 -10 784 1 1032 128 48 112 chr3 113505599 113505850 -104531308 - THE1B LTR MaLR -129 235 1 1442 239 27 22 chr3 113505857 113505930 -104531228 + L1ME3 LINE L1 5728 5799 -363 1838 129 91 20 chr3 113505930 113506271 -104530887 + MER47A DNA MER2_type 1 365 -1 1442 239 27 22 chr3 113506271 113506602 -104530556 + L1ME3 LINE L1 5799 6134 -28 1808 181 0 6 chr3 113507282 113507596 -104529562 - AluJb SINE Alu 0 312 1 191 294 0 0 chr3 113508255 113508306 -104528852 + L2 LINE L2 3261 3311 -2 1794 165 18 24 chr3 113508741 113509081 -104528077 + MER44D DNA MER2_type 2 609 0 1899 144 55 0 chr3 113509220 113509512 -104527646 - AluJo SINE Alu -4 308 1 398 197 0 26 chr3 113510264 113510340 -104526818 - MLT2E LTR ERVL -523 105 32 287 292 48 71 chr3 113510802 113510970 -104526188 + HAL1 LINE L1 25 188 -2319 465 235 143 92 chr3 113511795 113512195 -104524963 - MLT2C2 LTR ERVL 0 464 45 * 567 236 46 52 chr3 113512037 113512211 -104524947 - MLT1E3 LTR MaLR -402 222 50 363 290 47 9 chr3 113512240 113512347 -104524811 - MLT2F LTR ERVL -552 111 1 182 339 0 18 chr3 113512424 113512480 -104524678 + L2 LINE L2 3199 3253 -19 533 249 61 24 chr3 113512817 113512982 -104524176 - L2 LINE L2 0 3313 3143 2130 247 2 9 chr3 113513161 113513590 -104523568 + MLT2B3 LTR ERVL 1 426 -128 515 278 36 31 chr3 113513552 113513746 -104523412 - MER69 DNA AcHobo -1899 627 433 * 446 248 0 37 chr3 113513741 113513850 -104523308 - MER69 DNA AcHobo -923 303 199 * 22 0 0 0 chr3 113513881 113513903 -104523255 + AT_rich Low_complexity Low_complexity 1 22 0 35 41 0 0 chr3 113514963 113515012 -104522146 + AT_rich Low_complexity Low_complexity 1 49 0 2494 68 3 0 chr3 113515805 113516112 -104521046 + AluY SINE Alu 2 309 -2 692 73 0 21 chr3 113516143 113516239 -104520919 - L1PA10 LINE L1 -9 6159 6066 1097 307 75 34 chr3 113517158 113517569 -104519589 - L2 LINE L2 -2 3311 2884 209 274 113 40 chr3 113517570 113517694 -104519464 - L2 LINE L2 -19 3294 3162 1462 186 0 53 chr3 113518228 113518529 -104518629 + AluJo SINE Alu 1 285 -27 38046 85 6 14 chr3 113519730 113525927 -104511231 - L1PA6 LINE L1 -3 6151 11 870 249 66 23 chr3 113526439 113526786 -104510372 + L1ME4a LINE L1 5597 5907 -214 1661 148 16 64 chr3 113527360 113527671 -104509487 + AluJb SINE Alu 1 296 -16 294 245 40 60 chr3 113527673 113527824 -104509334 - MER103 DNA DNA -6 160 13 387 309 0 0 chr3 113527944 113528041 -104509117 - MER5A DNA MER1_type -84 105 9 21 36 0 0 chr3 113528175 113528203 -104508955 + AT_rich Low_complexity Low_complexity 1 28 0 1054 182 23 32 chr3 113528621 113528841 -104508317 + MER20 DNA MER1_type 2 219 0 246 138 0 52 chr3 113529760 113529818 -104507340 - FAM SINE Alu 0 179 125 22 0 0 0 chr3 113529922 113529944 -104507214 + AT_rich Low_complexity Low_complexity 1 22 0 372 353 33 5 chr3 113530628 113530812 -104506346 + MER5A DNA MER1_type 1 189 0 4215 180 68 7 chr3 113531681 113532059 -104505099 - L1MB3 LINE L1 -8 6175 5821 189 107 0 0 chr3 113532059 113532087 -104505071 + (TA)n Simple_repeat Simple_repeat 1 28 0 4215 180 68 7 chr3 113532087 113532716 -104504442 - L1MB3 LINE L1 -362 5821 5112 263 215 122 19 chr3 113532722 113532829 -104504329 + L1M4 LINE L1 4614 4731 -1415 226 311 0 0 chr3 113533313 113533387 -104503771 + L1ME LINE L1 901 974 -5957 300 333 49 77 chr3 113533402 113533807 -104503351 + L1ME LINE L1 989 1382 -5549 1581 224 27 9 chr3 113533872 113534202 -104502956 + MER58B DNA MER1_type 6 341 0 242 272 27 49 chr3 113534331 113534515 -104502643 + L1ME LINE L1 1282 1461 -4962 371 337 96 13 chr3 113534516 113534876 -104502282 + L1ME LINE L1 1686 2039 -4902 1840 215 127 56 chr3 113534957 113535728 -104501430 - LTR1B LTR ERV1 0 826 1 715 253 112 4 chr3 113535785 113536026 -104501132 + L1ME LINE L1 2283 2549 -4573 359 242 24 55 chr3 113536081 113536246 -104500912 + L1ME LINE L1 2641 2800 -4322 31118 105 9 25 chr3 113536307 113536968 -104500190 - L1PA7 LINE L1 -11 6458 5788 2396 85 0 13 chr3 113536968 113537275 -104499883 - AluY SINE Alu -8 303 1 31118 105 9 25 chr3 113537275 113543087 -104494071 - L1PA7 LINE L1 -681 5788 2 355 218 102 48 chr3 113543123 113543270 -104493888 + L1ME LINE L1 2892 3046 -4076 532 188 23 74 chr3 113543324 113543437 -104493721 + L1ME LINE L1 3636 3753 -3188 2250 66 0 0 chr3 113543437 113543708 -104493450 - AluY SINE Alu -8 303 33 2277 114 0 0 chr3 113543708 113544005 -104493153 - AluSx SINE Alu -14 298 1 532 188 23 74 chr3 113544005 113544066 -104493092 + L1ME LINE L1 3751 3802 -3139 642 225 149 4 chr3 113544181 113544439 -104492719 + L1ME3 LINE L1 5844 6163 -1 820 291 45 9 chr3 113544521 113544741 -104492417 - MIR SINE MIR -21 241 14 458 275 8 0 chr3 113544989 113545109 -104492049 - MLT1F1 LTR MaLR -443 124 4 203 260 0 0 chr3 113545262 113545312 -104491846 + (TATATG)n Simple_repeat Simple_repeat 3 52 0 293 290 65 19 chr3 113545579 113545686 -104491472 + MIR3 SINE MIR 89 200 -8 414 319 102 0 chr3 113546458 113546615 -104490543 + MIR SINE MIR 31 203 -59 742 297 9 9 chr3 113546907 113547119 -104490039 + MIR SINE MIR 13 224 -38 21 82 0 0 chr3 113547148 113547197 -104489961 + AT_rich Low_complexity Low_complexity 1 49 0 27 0 0 0 chr3 113547243 113547270 -104489888 + AT_rich Low_complexity Low_complexity 1 27 0 1495 145 0 0 chr3 113548103 113548317 -104488841 - AluJb SINE Alu -15 297 84 2518 60 0 27 chr3 113549204 113549537 -104487621 - LTR17 LTR ERV1 -456 324 1 345 48 0 0 chr3 113549540 113549582 -104487576 - HERV17 LTR ERV1 -4 8622 8581 180 200 0 0 chr3 113550985 113551035 -104486123 + (TA)n Simple_repeat Simple_repeat 2 51 0 5445 188 62 27 chr3 113551218 113551308 -104485850 + L1PA15 LINE L1 4153 4238 -1927 2339 34 41 14 chr3 113551308 113551600 -104485558 + AluY SINE Alu 1 300 -11 5445 188 62 27 chr3 113551600 113553471 -104483687 + L1PA15 LINE L1 4238 6158 -7 23 33 0 0 chr3 113553501 113553531 -104483627 + AT_rich Low_complexity Low_complexity 1 30 0 1588 171 7 77 chr3 113553844 113554017 -104483141 + MLT1B LTR MaLR 1 138 -252 1542 183 13 32 chr3 113554017 113554328 -104482830 + AluJo SINE Alu 5 309 -3 1588 171 7 77 chr3 113554328 113554532 -104482626 + MLT1B LTR MaLR 138 355 -35 330 250 50 58 chr3 113554833 113554953 -104482205 - MER94 DNA DNA -15 119 1 473 306 151 0 chr3 113555037 113555236 -104481922 - MIR SINE MIR -1 261 33 196 320 133 13 chr3 113556423 113556498 -104480660 - L2 LINE L2 -42 3230 3147 2108 148 3 8 chr3 113556688 113557046 -104480112 + L1PA16 LINE L1 5795 6150 -16 764 343 40 37 chr3 113557255 113557684 -104479474 + MLT1J LTR MaLR 2 431 -80 383 321 86 7 chr3 113558152 113558292 -104478866 + MIR3 SINE MIR 52 202 -6 228 337 69 0 chr3 113559633 113559734 -104477424 + L2 LINE L2 3146 3253 -19 2749 119 26 0 chr3 113559736 113560166 -104476992 + L1PA16 LINE L1 5717 6157 -9 43 0 0 0 chr3 113560166 113560209 -104476949 + AT_rich Low_complexity Low_complexity 1 43 0 2333 81 3 0 chr3 113561309 113561605 -104475553 + AluSx SINE Alu 1 297 -15 753 314 142 37 chr3 113561956 113562152 -104475006 + LTR33 LTR ERVL 8 182 -339 2394 88 0 3 chr3 113562152 113562458 -104474700 - AluSp SINE Alu -8 305 1 753 314 142 37 chr3 113562458 113562726 -104474432 + LTR33 LTR ERVL 182 521 0 2224 174 172 12 chr3 113562797 113563285 -104473873 + MLT1F1 LTR MaLR 1 566 -1 261 316 68 45 chr3 113564575 113564752 -104472406 - MIR3 SINE MIR -12 196 16 231 227 23 0 chr3 113565229 113565273 -104471885 - Charlie8 DNA MER1_type -2163 254 210 1815 138 16 7 chr3 113565276 113565581 -104471577 + L1MA9 LINE L1 5802 6109 -203 883 182 13 0 chr3 113565581 113565735 -104471423 + MER2 DNA MER2_type 1 156 -189 2477 42 3 10 chr3 113565738 113566044 -104471114 - AluY SINE Alu -7 304 1 1781 104 100 7 chr3 113566044 113566323 -104470835 - THE1B LTR MaLR -59 305 1 736 166 86 13 chr3 113566325 113566476 -104470682 + MER2 DNA MER2_type 182 343 -2 954 167 15 5 chr3 113566476 113566680 -104470478 + L1MA9 LINE L1 6106 6311 -1 321 301 70 26 chr3 113566692 113566848 -104470310 - Charlie8 DNA MER1_type -2180 237 75 2563 49 0 3 chr3 113567651 113567955 -104469203 - AluY SINE Alu -8 303 1 222 37 0 0 chr3 113568029 113568056 -104469102 + (A)n Simple_repeat Simple_repeat 1 27 0 1782 95 30 0 chr3 113568060 113568323 -104468835 - L1MA1 LINE L1 -14 6288 6018 546 266 177 22 chr3 113568845 113569071 -104468087 + MIR SINE MIR 2 262 0 1005 226 116 102 chr3 113569720 113570252 -104466906 - MLT1H1 LTR MaLR -2 553 2 2105 120 0 7 chr3 113570348 113570648 -104466510 + AluSx SINE Alu 15 312 0 193 388 0 12 chr3 113570709 113570789 -104466369 + MIR SINE MIR 29 107 -155 24 32 0 0 chr3 113571144 113571175 -104465983 + AT_rich Low_complexity Low_complexity 1 31 0 205 333 120 28 chr3 113571231 113571339 -104465819 + L2 LINE L2 2937 3054 -259 800 99 0 33 chr3 113571510 113571661 -104465497 + (GGGAA)n Simple_repeat Simple_repeat 5 150 0 2257 114 0 0 chr3 113571771 113572061 -104465097 - AluSg SINE Alu -19 291 2 2144 123 45 28 chr3 113572140 113572498 -104464660 + THE1B LTR MaLR 1 364 0 380 271 127 42 chr3 113572618 113572784 -104464374 - MIR SINE MIR -3 259 80 760 217 11 69 chr3 113573183 113573303 -104463855 + MER45A DNA AcHobo 1 109 -1472 2149 93 4 0 chr3 113573303 113573627 -104463531 + AluY SINE Alu 1 325 0 760 217 11 69 chr3 113573627 113573694 -104463464 + MER45A DNA AcHobo 109 178 0 467 284 45 15 chr3 113574475 113574609 -104462549 - MIR SINE MIR -47 215 78 1061 236 12 41 chr3 113574880 113575126 -104462032 + MER8 DNA MER2_type 1 239 0 240 238 0 0 chr3 113575131 113575194 -104461964 + (TA)n Simple_repeat Simple_repeat 1 63 0 287 157 60 24 chr3 113575207 113575290 -104461868 + L1M4 LINE L1 4959 5044 -1102 1697 138 125 10 chr3 113575655 113575944 -104461214 + MER47A DNA MER2_type 45 366 0 1866 192 26 26 chr3 113575944 113576179 -104460979 - MLT1B LTR MaLR 0 390 153 3824 142 29 1 chr3 113576179 113576836 -104460322 - L1MA4 LINE L1 -4 6296 5622 1866 192 26 26 chr3 113576836 113576990 -104460168 - MLT1B LTR MaLR -236 154 1 1729 191 0 0 chr3 113577596 113577925 -104459233 + AluSx SINE Alu 1 312 0 249 146 21 0 chr3 113579376 113579424 -104457734 + (TA)n Simple_repeat Simple_repeat 1 49 0 677 229 72 18 chr3 113579518 113579684 -104457474 + MIR SINE MIR 71 245 -17 210 279 0 0 chr3 113579699 113579760 -104457398 + CT-rich Low_complexity Low_complexity 2 62 0 226 283 0 0 chr3 113580336 113580389 -104456769 - L2 LINE L2 -3 3310 3258 23 68 0 0 chr3 113580539 113580583 -104456575 + AT_rich Low_complexity Low_complexity 1 44 0 253 24 73 0 chr3 113581485 113581526 -104455632 + T-rich Low_complexity Low_complexity 2 45 0 1889 151 0 16 chr3 113581623 113581940 -104455218 + AluSx SINE Alu 1 312 0 21 36 0 0 chr3 113582424 113582452 -104454706 + AT_rich Low_complexity Low_complexity 1 28 0 186 341 24 0 chr3 113582589 113582674 -104454484 + MIR SINE MIR 175 261 -1 315 311 113 20 chr3 113585783 113585934 -104451224 + LTR67 LTR ERVL 8 172 -385 2088 117 0 0 chr3 113586185 113586467 -104450691 - AluSq SINE Alu -11 302 21 477 276 120 14 chr3 113586591 113586808 -104450350 + L2 LINE L2 2989 3228 -85 5896 148 44 36 chr3 113586862 113588724 -104448434 - L1PB1 LINE L1 -2 6149 4281 6247 183 26 116 chr3 113588724 113589064 -104448094 + L1 LINE L1 2902 3271 -2875 195 42 0 0 chr3 113589064 113589088 -104448070 + (GAAAA)n Simple_repeat Simple_repeat 4 27 0 6247 183 26 116 chr3 113589088 113590852 -104446306 + L1 LINE L1 3271 4816 -1330 23 0 0 0 chr3 113590853 113590876 -104446282 + AT_rich Low_complexity Low_complexity 1 23 0 292 263 242 0 chr3 113591660 113591755 -104445403 + MIR3 SINE MIR 39 156 -52 424 261 50 61 chr3 113592695 113592875 -104444283 - MER5B DNA MER1_type 0 178 1 289 309 78 69 chr3 113593826 113594043 -104443115 - MIR SINE MIR -12 250 32 23 33 0 0 chr3 113594697 113594727 -104442431 + AT_rich Low_complexity Low_complexity 1 30 0 454 71 0 192 chr3 113595207 113595306 -104441852 - MADE1 DNA Mariner 0 80 1 432 309 19 25 chr3 113595787 113595949 -104441209 - MIR SINE MIR 0 262 102 260 255 41 51 chr3 113595993 113596091 -104441067 - MIR SINE MIR -149 113 17 21 0 0 0 chr3 113596630 113596651 -104440507 + AT_rich Low_complexity Low_complexity 1 21 0 2269 101 0 0 chr3 113597442 113597749 -104439409 + AluY SINE Alu 1 307 -4 613 134 52 0 chr3 113597987 113598084 -104439074 - FRAM SINE Alu -18 158 57 4542 154 44 14 chr3 113598143 113598812 -104438346 - L1PB4 LINE L1 -50 6106 5459 2060 99 51 73 chr3 113598812 113599184 -104437974 + THE1B LTR MaLR 1 364 0 11749 95 4 1 chr3 113599184 113600758 -104436400 + THE1B-int LTR MaLR 1 1580 0 2172 115 57 14 chr3 113600758 113601107 -104436051 + THE1B LTR MaLR 1 364 0 4542 154 44 14 chr3 113601107 113601672 -104435486 - L1PB4 LINE L1 -696 5460 4836 25 31 0 0 chr3 113602823 113602855 -104434303 + AT_rich Low_complexity Low_complexity 1 32 0 248 343 57 0 chr3 113603315 113603420 -104433738 + MIR SINE MIR 87 197 -65 230 28 0 56 chr3 113604239 113604275 -104432883 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 772 221 14 22 chr3 113605658 113606024 -104431134 + L1ME1 LINE L1 4677 5111 -1035 928 212 16 69 chr3 113606105 113606264 -104430894 + MLT1A2 LTR MaLR 188 269 -105 4201 160 55 81 chr3 113606264 113607363 -104429795 - MER11C LTR ERVK 0 1071 1 928 212 16 69 chr3 113607363 113607464 -104429694 + MLT1A2 LTR MaLR 269 374 0 1308 229 35 29 chr3 113607464 113607839 -104429319 + L1ME1 LINE L1 5734 6110 -56 647 164 0 116 chr3 113607842 113607988 -104429170 + FLAM_C SINE Alu 2 130 -3 1902 173 0 0 chr3 113608010 113608317 -104428841 - AluSx SINE Alu -5 307 1 21 0 0 0 chr3 113608317 113608338 -104428820 + AT_rich Low_complexity Low_complexity 1 21 0 451 271 117 69 chr3 113608440 113608652 -104428506 - MIR SINE MIR -2 260 32 2160 100 0 0 chr3 113608652 113608964 -104428194 - AluY SINE Alu 0 312 1 451 271 117 69 chr3 113608964 113608997 -104428161 - MIR SINE MIR -230 32 2 287 286 84 34 chr3 113609164 113609420 -104427738 - LTR16B LTR ERVL -14 450 170 1750 123 0 7 chr3 113609750 113610019 -104427139 + L1PB1 LINE L1 5882 6148 -3 192 40 0 0 chr3 113610730 113610755 -104426403 + (CA)n Simple_repeat Simple_repeat 1 25 0 456 273 56 7 chr3 113611237 113611380 -104425778 - MIR SINE MIR -17 245 96 864 215 51 0 chr3 113611485 113611662 -104425496 - MER5A DNA MER1_type -3 186 1 4446 158 22 17 chr3 113611724 113612556 -104424602 + L1PB4 LINE L1 5321 6156 0 2628 212 68 59 chr3 113612677 113612772 -104424386 - L1ME1 LINE L1 -8 6158 6065 1727 134 91 0 chr3 113612772 113613048 -104424110 + AluSx SINE Alu 4 304 -8 2628 212 68 59 chr3 113613048 113613726 -104423432 - L1ME1 LINE L1 -101 6065 5378 1224 209 82 3 chr3 113613724 113614079 -104423079 - L1ME1 LINE L1 -1429 4717 4335 * 264 319 246 11 chr3 113614316 113614592 -104422566 + L2 LINE L2 2972 3312 -1 1262 184 20 44 chr3 113614862 113615204 -104421954 + MER96B DNA MER1_type? 1 334 -83 2349 80 3 3 chr3 113615204 113615504 -104421654 + AluY SINE Alu 1 300 -11 319 71 89 9 chr3 113615504 113615616 -104421542 + (TA)n Simple_repeat Simple_repeat 1 121 0 370 215 0 13 chr3 113615616 113615695 -104421463 + MER96B DNA MER1_type? 323 400 -17 2387 53 0 3 chr3 113615749 113616056 -104421102 + AluY SINE Alu 1 306 0 1491 187 42 7 chr3 113616137 113616420 -104420738 + AluJb SINE Alu 1 293 -19 1872 193 84 73 chr3 113616564 113617112 -104420046 - MLT2B3 LTR ERVL 0 554 1 23 0 0 0 chr3 113619275 113619298 -104417860 + AT_rich Low_complexity Low_complexity 1 23 0 789 327 59 50 chr3 113619532 113620009 -104417149 - L2 LINE L2 -15 3298 2818 1045 264 48 29 chr3 113620111 113620421 -104416737 - L2 LINE L2 -504 2810 2495 1054 226 158 20 chr3 113620467 113620860 -104416298 + LTR50 LTR ERVL 349 795 0 430 238 0 0 chr3 113620984 113621068 -104416090 + AluJ/FLAM SINE Alu 1 84 -228 390 269 104 26 chr3 113621080 113621273 -104415885 + HAL1 LINE L1 48 255 -2252 8371 226 70 40 chr3 113621324 113625288 -104411870 + L1MDa LINE L1 185 4032 -2508 2022 116 32 0 chr3 113625288 113625572 -104411586 + AluSg SINE Alu 4 296 -14 8371 226 70 40 chr3 113625572 113626252 -104410906 + L1MDa LINE L1 4032 4691 -1849 1841 238 38 40 chr3 113626252 113626773 -104410385 - MLT2B1 LTR ERVL 0 520 1 8371 226 70 40 chr3 113626773 113627100 -104410058 + L1MDa LINE L1 4691 5007 -1533 1409 197 137 13 chr3 113627100 113627481 -104409677 - MSTA LTR MaLR 0 428 1 8371 226 70 40 chr3 113627481 113627960 -104409198 + L1MDa LINE L1 5007 5773 -767 2049 138 0 13 chr3 113627960 113628265 -104408893 + AluY SINE Alu 1 301 -10 8371 226 70 40 chr3 113628265 113628283 -104408875 + L1MDa LINE L1 5773 5789 -751 278 287 32 11 chr3 113628559 113628653 -104408505 - MIR SINE MIR -71 191 96 9327 173 16 2 chr3 113628784 113630399 -104406759 + L1PBa LINE L1 3 1639 -5224 * 12207 165 70 16 chr3 113630371 113632281 -104404877 + L1P5 LINE L1 8 1814 -4394 2645 94 3 0 chr3 113632281 113632633 -104404525 - THE1A LTR MaLR -2 353 1 12207 165 70 16 chr3 113632633 113634193 -104402965 + L1P5 LINE L1 1814 3288 -2920 180 0 0 0 chr3 113634193 113634213 -104402945 + (CAA)n Simple_repeat Simple_repeat 2 21 0 12207 165 70 16 chr3 113634213 113634908 -104402250 + L1P5 LINE L1 3288 3944 -2264 249 33 0 0 chr3 113634908 113634938 -104402220 + (TAAAA)n Simple_repeat Simple_repeat 3 32 0 12207 165 70 16 chr3 113634938 113635648 -104401510 + L1P5 LINE L1 3944 4614 -1594 261 0 0 0 chr3 113635648 113635677 -104401481 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 12207 165 70 16 chr3 113635677 113635990 -104401168 + L1P5 LINE L1 4614 5506 -702 247 223 21 106 chr3 113635990 113636084 -104401074 + MLT2D LTR ERVL 140 225 -189 * 1000 221 30 13 chr3 113636080 113636311 -104400847 + MLT1A1 LTR MaLR 123 357 -8 842 300 94 57 chr3 113636489 113636965 -104400193 + MLT1K LTR MaLR 95 588 0 381 267 34 68 chr3 113637158 113637304 -104399854 + MIR SINE MIR 4 144 -118 265 340 0 0 chr3 113637412 113637506 -104399652 + (TG)n Simple_repeat Simple_repeat 1 94 0 193 374 113 20 chr3 113637631 113637733 -104399425 - MIR SINE MIR -2 260 169 2447 78 0 7 chr3 113637733 113638041 -104399117 + AluY SINE Alu 1 306 -5 193 374 113 20 chr3 113638041 113638133 -104399025 - MIR SINE MIR -93 169 48 210 153 47 35 chr3 113639549 113639634 -104397524 + (TAGA)n Simple_repeat Simple_repeat 4 89 0 842 289 28 4 chr3 113639945 113640198 -104396960 + MIR SINE MIR 3 261 -1 313 305 111 53 chr3 113640957 113641183 -104395975 + MIR SINE MIR 23 261 -1 741 259 61 8 chr3 113641314 113641561 -104395597 + HERV16 LTR ERVL 859 1118 -3878 476 271 40 72 chr3 113641585 113641925 -104395233 + HERV16 LTR ERVL 3379 4036 -1333 270 308 37 9 chr3 113642000 113642107 -104395051 + LTR16A LTR ERVL 331 440 -10 2647 185 93 42 chr3 113642593 113642930 -104394228 + L1MB4 LINE L1 5436 5754 -426 198 103 0 0 chr3 113642930 113642959 -104394199 + (TA)n Simple_repeat Simple_repeat 2 30 0 2647 185 93 42 chr3 113642959 113643021 -104394137 + L1MB4 LINE L1 5754 5811 -369 920 131 0 0 chr3 113643021 113643151 -104394007 + FLAM_C SINE Alu 4 133 0 2647 185 93 42 chr3 113643151 113643459 -104393699 + L1MB4 LINE L1 5811 6180 0 2118 161 8 21 chr3 113643870 113644254 -104392904 + L1PA16 LINE L1 5775 6153 -13 4868 149 63 17 chr3 113644266 113644861 -104392297 + L1PA16 LINE L1 5006 5572 -594 2087 123 7 7 chr3 113644861 113645163 -104391995 + AluSx SINE Alu 1 302 -10 4868 149 63 17 chr3 113645163 113645686 -104391472 + L1PA16 LINE L1 5572 6160 -6 328 171 24 0 chr3 113645781 113645863 -104391295 + (CATA)n Simple_repeat Simple_repeat 3 86 0 40420 72 7 2 chr3 113646341 113652465 -104384693 - L1PA5 LINE L1 0 6154 4 327 250 106 43 chr3 113652486 113652649 -104384509 - MIR SINE MIR -43 219 44 374 319 35 62 chr3 113653182 113653249 -104383909 + MIR SINE MIR 18 85 -177 2080 64 54 54 chr3 113653249 113653544 -104383614 + AluY SINE Alu 3 297 -14 374 319 35 62 chr3 113653544 113653620 -104383538 + MIR SINE MIR 85 157 -105 480 111 89 22 chr3 113653962 113654052 -104383106 + MLT2C2 LTR ERVL 1 96 -368 1227 208 9 0 chr3 113654065 113654319 -104382839 - AluJo SINE Alu 0 305 50 881 211 11 11 chr3 113654319 113654509 -104382649 + MLT2C2 LTR ERVL 128 317 -147 806 88 0 0 chr3 113654670 113654772 -104382386 + AluSg/x SINE Alu 193 294 -15 249 234 0 0 chr3 113654887 113654951 -104382207 + (TAG)n Simple_repeat Simple_repeat 1 64 0 311 229 124 19 chr3 113654959 113655064 -104382094 - MLT1K LTR MaLR -74 514 399 1822 226 99 78 chr3 113655491 113656118 -104381040 + MLT1E1 LTR MaLR 15 654 0 11211 160 45 11 chr3 113656142 113656221 -104380937 + L1M1 LINE L1 13 88 -7477 1594 136 103 11 chr3 113656221 113656493 -104380665 + AluSq SINE Alu 1 297 -16 2407 69 3 3 chr3 113656497 113656802 -104380356 + AluY SINE Alu 1 305 -6 11211 160 45 11 chr3 113656802 113658845 -104378313 + L1M1 LINE L1 90 2587 -4978 2364 91 3 0 chr3 113659241 113659537 -104377621 - AluSx SINE Alu -15 297 1 265 268 42 87 chr3 113659663 113659852 -104377306 + MIR SINE MIR 25 209 -53 10001 136 26 23 chr3 113661341 113663163 -104373995 + L1P LINE L1 11 1837 -4309 4286 67 2 4 chr3 113663163 113663718 -104373440 - L1PA5 LINE L1 -1 6153 5600 6455 171 55 16 chr3 113663819 113665367 -104371791 - L1PBa LINE L1 -2212 4650 2948 4339 25 0 4 chr3 113665367 113665879 -104371279 - L1PA3 LINE L1 -2 6153 5644 6455 171 55 16 chr3 113665879 113667039 -104370119 - L1PBa LINE L1 -3914 2948 1835 880 149 16 48 chr3 113667032 113667220 -104369938 - L1PBa LINE L1 -6048 815 634 * 509 179 9 0 chr3 113667220 113667326 -104369832 - L1PBa LINE L1 -6663 200 94 2330 84 0 7 chr3 113667541 113667837 -104369321 + AluY SINE Alu 1 294 -17 180 0 0 0 chr3 113667837 113667857 -104369301 + (TA)n Simple_repeat Simple_repeat 2 21 0 2557 73 38 0 chr3 113668344 113668686 -104368472 + THE1A LTR MaLR 1 355 0 592 187 0 8 chr3 113669169 113669292 -104367866 - L1PBa LINE L1 -6739 124 3 571 283 77 121 chr3 113669337 113670062 -104367096 - HAL1 LINE L1 -1554 953 261 417 37 0 0 chr3 113670294 113670348 -104366810 + MADE1 DNA Mariner 1 54 -26 2294 100 0 3 chr3 113671521 113671821 -104365337 + AluSg SINE Alu 1 299 -11 356 332 175 14 chr3 113672126 113672343 -104364815 + MIR SINE MIR 2 253 -9 485 349 146 17 chr3 113673532 113673882 -104363276 - LTR16A LTR ERVL -1 449 55 887 204 19 110 chr3 113673952 113674216 -104362942 - MLT1B LTR MaLR 0 383 135 31 44 0 0 chr3 113674261 113674306 -104362852 + AT_rich Low_complexity Low_complexity 1 45 0 212 408 10 10 chr3 113675731 113675834 -104361324 + L2 LINE L2 3167 3269 -3 2183 117 10 0 chr3 113676825 113677125 -104360033 - AluSx SINE Alu -9 303 1 275 254 42 0 chr3 113677396 113677467 -104359691 + L2 LINE L2 3224 3297 -16 882 281 114 52 chr3 113678318 113678837 -104358321 + MLT1H1 LTR MaLR 3 553 -2 311 171 57 14 chr3 113679139 113679209 -104357949 - MIR SINE MIR -112 150 78 461 325 26 0 chr3 113679268 113679419 -104357739 + L2 LINE L2 3118 3272 0 222 0 79 0 chr3 113680247 113680285 -104356873 + (CAA)n Simple_repeat Simple_repeat 2 42 0 2359 102 0 3 chr3 113680624 113680937 -104356221 + AluSx SINE Alu 1 312 0 365 186 0 12 chr3 113680937 113681012 -104356146 + GA-rich Low_complexity Low_complexity 11 86 0 646 180 7 7 chr3 113682086 113682236 -104354922 + CT-rich Low_complexity Low_complexity 3 152 0 291 279 0 0 chr3 113682948 113683016 -104354142 + G-rich Low_complexity Low_complexity 1 68 0 1944 163 3 0 chr3 113683388 113683694 -104353464 - AluJb SINE Alu -5 307 1 347 286 22 90 chr3 113683764 113683942 -104353216 + MIR SINE MIR 1 166 -96 320 344 102 32 chr3 113683948 113684105 -104353053 - L2 LINE L2 -3 3269 3102 223 229 86 29 chr3 113684071 113684176 -104352982 - MIR SINE MIR -5 257 147 * 199 206 111 127 chr3 113684197 113684323 -104352835 - MIR SINE MIR -58 204 81 239 164 30 0 chr3 113685462 113685529 -104351629 + Charlie7 DNA MER1_type 78 146 -2466 619 187 72 6 chr3 113685641 113685807 -104351351 + Charlie7 DNA MER1_type 506 682 -1930 243 250 98 30 chr3 113686097 113686229 -104350929 + Charlie8 DNA MER1_type 54 194 -2223 2346 157 5 52 chr3 113686372 113686819 -104350339 + MSTB1 LTR MaLR 7 432 0 1901 139 35 23 chr3 113686869 113687214 -104349944 - MER46B DNA MER2_type -8 228 5 282 56 0 0 chr3 113688087 113688123 -104349035 + (TG)n Simple_repeat Simple_repeat 2 37 0 1750 126 36 0 chr3 113689752 113690030 -104347128 + L1PB4 LINE L1 5869 6156 0 625 194 26 43 chr3 113690039 113690344 -104346814 + MER93b LTR ERV1 29 367 -6 1710 143 36 78 chr3 113690359 113690667 -104346491 + AluSx SINE Alu 1 295 -17 577 266 104 0 chr3 113691121 113691294 -104345864 + MIR SINE MIR 4 194 -68 213 343 0 0 chr3 113691297 113691364 -104345794 + (CTA)n Simple_repeat Simple_repeat 2 68 0 226 242 106 0 chr3 113691688 113691754 -104345404 + MIR3 SINE MIR 120 192 -16 492 336 66 4 chr3 113692429 113692700 -104344458 + MLT1I LTR MaLR 104 391 -18 272 178 14 55 chr3 113694788 113694861 -104342297 - MER5B DNA MER1_type -108 70 1 * 425 303 67 8 chr3 113694861 113694974 -104342184 + L2 LINE L2 3153 3272 0 302 138 15 0 chr3 113695441 113695506 -104341652 - L1MA8 LINE L1 -6 6285 6220 1370 274 44 39 chr3 113695507 113696265 -104340893 + L1M1 LINE L1 14 834 -6655 3866 243 45 29 chr3 113696557 113698735 -104338423 + L1M1 LINE L1 1884 4100 -3465 284 257 57 0 chr3 113698737 113698807 -104338351 - Tigger7 DNA MER2_type -470 80 7 295 364 50 0 chr3 113699019 113699118 -104338040 - L2 LINE L2 -35 3237 3134 312 345 43 9 chr3 113700181 113700297 -104336861 - L2 LINE L2 -2 3270 3151 966 226 44 91 chr3 113700513 113700898 -104336260 + MLT1A2 LTR MaLR 1 367 -7 319 364 58 6 chr3 113700912 113701085 -104336073 - MIR SINE MIR -32 230 49 1461 193 63 58 chr3 113701135 113701529 -104335629 - MSTD LTR MaLR 0 396 1 4198 252 119 72 chr3 113701532 113703185 -104333973 - MSTC-int LTR MaLR -4 1731 2 1484 181 113 38 chr3 113703187 113703585 -104333573 - MSTC LTR MaLR 0 428 1 1167 272 104 8 chr3 113704236 113704630 -104332528 + L2 LINE L2 1783 2214 -1100 3713 108 40 33 chr3 113704681 113705285 -104331873 - MER4B LTR ERV1 -2 608 1 680 277 38 11 chr3 113705328 113705512 -104331646 - MLT1F LTR MaLR -108 434 246 414 276 60 15 chr3 113705516 113705650 -104331508 - MLT1F LTR MaLR -402 140 1 284 274 47 108 chr3 113705650 113705781 -104331377 - MLT1F-int LTR MaLR 0 1371 1234 1642 206 16 30 chr3 113705781 113706149 -104331009 + MLT1A1 LTR MaLR 1 363 -2 284 274 47 108 chr3 113706149 113706378 -104330780 - MLT1F-int LTR MaLR -137 1234 1033 3313 181 22 15 chr3 113706696 113708741 -104328417 + L1PA16 LINE L1 4495 6166 0 447 295 35 79 chr3 113709149 113709382 -104327776 - MLT1F-int LTR MaLR -770 601 388 2257 121 0 0 chr3 113709382 113709688 -104327470 - AluSx SINE Alu -6 306 1 447 295 35 79 chr3 113709688 113709823 -104327335 - MLT1F-int LTR MaLR -983 388 249 815 257 62 70 chr3 113709854 113710319 -104326839 + MLT1G3 LTR MaLR 24 593 -2 9740 199 107 23 chr3 113711091 113712463 -104324695 + L1MCa LINE L1 3 1258 -5168 190 53 0 53 chr3 113712463 113712501 -104324657 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 9740 199 107 23 chr3 113712501 113713399 -104323759 + L1MCa LINE L1 1258 2079 -4347 228 35 0 0 chr3 113713399 113713428 -104323730 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 9740 199 107 23 chr3 113713428 113713471 -104323687 + L1MCa LINE L1 2079 2117 -4309 204 111 0 0 chr3 113713471 113713507 -104323651 + (TTAG)n Simple_repeat Simple_repeat 1 36 0 1613 179 48 0 chr3 113713507 113713775 -104323383 - AluJb SINE Alu -31 281 1 9740 199 107 23 chr3 113713775 113714246 -104322912 + L1MCa LINE L1 2116 3062 -3364 1191 216 15 4 chr3 113714236 113714500 -104322658 + L1MCa LINE L1 4226 4492 -1934 * 612 231 40 20 chr3 113714503 113714702 -104322456 + L1MCa LINE L1 4661 4863 -1563 578 219 41 0 chr3 113714752 113714875 -104322283 + MER58B DNA MER1_type 214 341 0 344 309 67 72 chr3 113715324 113715547 -104321611 - MIR SINE MIR -3 259 38 212 322 63 52 chr3 113717766 113717940 -104319218 - MIR SINE MIR -69 193 18 315 265 37 37 chr3 113718753 113718915 -104318243 - HAL1b LINE L1 -437 911 750 468 282 83 95 chr3 113719164 113719681 -104317477 - HAL1 LINE L1 -827 1680 1170 23 0 0 0 chr3 113720423 113720446 -104316712 + AT_rich Low_complexity Low_complexity 1 23 0 5386 154 43 2 chr3 113721069 113721933 -104315225 + L1PA16 LINE L1 9 907 -5942 2512 190 41 14 chr3 113721931 113724810 -104312348 + L1PA16 LINE L1 3857 6869 0 * 429 20 0 0 chr3 113725535 113725585 -104311573 + (TATTG)n Simple_repeat Simple_repeat 1 50 0 21 0 0 0 chr3 113727020 113727041 -104310117 + AT_rich Low_complexity Low_complexity 1 21 0 239 281 100 56 chr3 113727514 113727749 -104309409 - MIR3 SINE MIR -19 243 2 362 293 36 21 chr3 113728761 113728901 -104308257 - MIR SINE MIR -7 255 114 1862 139 105 15 chr3 113728977 113729309 -104307849 - THE1B LTR MaLR 0 364 3 11718 96 2 1 chr3 113729311 113730888 -104306270 - THE1B-int LTR MaLR 0 1580 1 1615 183 142 0 chr3 113730888 113731205 -104305953 - THE1B LTR MaLR 0 364 3 22 35 0 0 chr3 113732567 113732596 -104304562 + AT_rich Low_complexity Low_complexity 1 29 0 677 259 112 5 chr3 113733677 113733882 -104303276 + LTR16C LTR ERVL 257 483 -8 432 293 76 19 chr3 113734219 113734376 -104302782 - MIR SINE MIR -84 178 13 243 202 83 71 chr3 113734462 113734546 -104302612 + MIR SINE MIR 122 206 -56 674 230 35 88 chr3 113734632 113734858 -104302300 - MLT1J2 LTR MaLR -199 251 38 594 290 160 33 chr3 113734945 113735560 -104301598 + L2 LINE L2 2519 3216 -97 2089 127 3 0 chr3 113735568 113735903 -104301255 - AluSp SINE Alu 0 344 9 5843 166 48 23 chr3 113735971 113738137 -104299021 - L1MA9 LINE L1 -9 6303 4090 1831 172 7 0 chr3 113738200 113738490 -104298668 - AluSx SINE Alu -20 292 1 229 224 0 0 chr3 113738504 113738553 -104298605 + L2 LINE L2 3259 3307 -6 284 70 23 0 chr3 113738812 113738855 -104298303 + (TTTCC)n Simple_repeat Simple_repeat 4 47 0 22 56 0 0 chr3 113739074 113739110 -104298048 + AT_rich Low_complexity Low_complexity 1 36 0 7416 33 6 0 chr3 113739110 113740582 -104296576 - L1PA4 LINE L1 -11 6144 4669 186 304 58 29 chr3 113742527 113742596 -104294562 - L2 LINE L2 -8 3305 3235 233 333 100 0 chr3 113744212 113744302 -104292856 + L2 LINE L2 3160 3258 -14 759 115 0 0 chr3 113744644 113744748 -104292410 - AluSg/x SINE Alu -23 287 184 2200 113 0 0 chr3 113744928 113745230 -104291928 + AluSg1 SINE Alu 1 302 -7 285 274 0 0 chr3 113745401 113745474 -104291684 + CT-rich Low_complexity Low_complexity 2 74 0 262 247 165 47 chr3 113746982 113747067 -104290091 - L2 LINE L2 -9 3263 3169 1036 254 125 50 chr3 113747769 113748312 -104288846 + MER34C LTR ERV1 2 585 0 2673 131 30 31 chr3 113748624 113749222 -104287936 - MER4E LTR ERV1 0 766 1 418 328 79 11 chr3 113749934 113750148 -104287010 + MIR SINE MIR 11 229 -33 213 371 77 0 chr3 113750143 113750286 -104286872 - MIR SINE MIR -51 211 58 * 22 0 0 0 chr3 113750667 113750689 -104286469 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr3 113750864 113750894 -104286264 + AT_rich Low_complexity Low_complexity 1 30 0 2258 132 6 11 chr3 113751085 113751442 -104285716 - THE1A LTR MaLR 0 355 1 9641 122 2 34 chr3 113751641 113753130 -104284028 - THE1A-int LTR MaLR -139 1441 1 307 191 15 0 chr3 113753160 113753228 -104283930 - L1 LINE L1 -1584 5278 5210 465 19 0 0 chr3 113753228 113753282 -104283876 + (TA)n Simple_repeat Simple_repeat 2 55 0 9861 204 49 13 chr3 113753282 113757926 -104279232 - L1PBa LINE L1 -1747 5115 13 1306 13 0 0 chr3 113758077 113758227 -104278931 - L1PA2 LINE L1 -159 5996 5847 633 13 0 13 chr3 113758221 113758298 -104278860 + L1PA2 LINE L1 5739 5814 -341 * 5839 122 11 2 chr3 113758489 113759375 -104277783 + L1PB1 LINE L1 5258 6151 0 247 336 62 18 chr3 113759387 113759500 -104277658 - MIR3 SINE MIR -76 132 15 201 233 0 0 chr3 113759932 113759975 -104277183 + CT-rich Low_complexity Low_complexity 2 44 0 1074 176 5 3 chr3 113760347 113760573 -104276585 - AluJb SINE Alu -8 304 2 1818 157 0 0 chr3 113760611 113760898 -104276260 - AluSx SINE Alu -25 287 1 246 313 12 25 chr3 113761743 113761823 -104275335 + MIR SINE MIR 5 83 -179 313 327 24 36 chr3 113761870 113762004 -104275154 + MIR SINE MIR 79 212 -50 2265 92 0 0 chr3 113762004 113762299 -104274859 - AluY SINE Alu -16 295 1 313 327 24 36 chr3 113762299 113762332 -104274826 + MIR SINE MIR 212 244 -18 1991 112 14 10 chr3 113762372 113762667 -104274491 - AluSx SINE Alu -16 296 1 2458 80 11 32 chr3 113763413 113763786 -104273372 - L1MA1 LINE L1 -4 6298 5934 35813 93 23 5 chr3 113764034 113770068 -104267090 - L1PA6 LINE L1 -1 6153 11 625 254 37 11 chr3 113770377 113770566 -104266592 - L1MC4a LINE L1 -512 7296 7103 551 307 80 24 chr3 113770595 113770807 -104266351 - MIR SINE MIR -21 241 18 1399 233 33 64 chr3 113770844 113771300 -104265858 + L1MD3 LINE L1 7541 7982 -13 24 0 0 0 chr3 113771726 113771750 -104265408 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr3 113772763 113772789 -104264369 + AT_rich Low_complexity Low_complexity 1 26 0 348 252 259 8 chr3 113773719 113773850 -104263308 + MER5A DNA MER1_type 23 186 -3 379 383 88 13 chr3 113775024 113775408 -104261750 - L2 LINE L2 -470 2844 2432 33 43 0 0 chr3 113775458 113775505 -104261653 + AT_rich Low_complexity Low_complexity 1 47 0 27094 81 4 1 chr3 113776886 113781393 -104255765 + L1PA7 LINE L1 1632 6154 0 190 365 51 39 chr3 113781951 113782107 -104255051 + MIR SINE MIR 71 228 -34 22 70 0 0 chr3 113783199 113783242 -104253916 + AT_rich Low_complexity Low_complexity 1 43 0 371 241 136 93 chr3 113784407 113784643 -104252515 + L2 LINE L2 1367 1612 -1702 195 152 0 0 chr3 113784714 113784760 -104252398 + (TA)n Simple_repeat Simple_repeat 1 46 0 24 0 0 0 chr3 113785601 113785625 -104251533 + AT_rich Low_complexity Low_complexity 1 24 0 342 264 38 25 chr3 113786700 113786859 -104250299 - L1MC4a LINE L1 -1929 5879 5719 429 271 75 16 chr3 113787123 113787311 -104249847 - MIR SINE MIR -3 259 61 280 256 51 68 chr3 113787417 113787534 -104249624 + MIR SINE MIR 98 212 -50 21 57 0 0 chr3 113787815 113787850 -104249308 + AT_rich Low_complexity Low_complexity 1 35 0 1846 123 26 7 chr3 113788182 113788484 -104248674 + L1PA11 LINE L1 5867 6174 0 23 33 0 0 chr3 113788712 113788742 -104248416 + AT_rich Low_complexity Low_complexity 1 30 0 1498 124 4 35 chr3 113788746 113789005 -104248153 - L1MA1 LINE L1 -7 6295 6045 2237 92 0 0 chr3 113789771 113790065 -104247093 + AluSg1 SINE Alu 1 294 -15 1573 76 44 9 chr3 113790378 113790603 -104246555 + MLT2A1 LTR ERVL 2 234 -210 7142 177 21 1 chr3 113790603 113791297 -104245861 + L1PB1 LINE L1 3701 4380 -1771 387 0 0 0 chr3 113791297 113791340 -104245818 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 7142 177 21 1 chr3 113791340 113792687 -104244471 + L1PB1 LINE L1 4380 5699 -452 366 23 0 0 chr3 113792687 113792730 -104244428 + (CA)n Simple_repeat Simple_repeat 2 44 0 * 489 59 0 35 chr3 113792729 113792814 -104244344 + (TA)n Simple_repeat Simple_repeat 2 83 0 7142 177 21 1 chr3 113792730 113793021 -104244137 + L1PB1 LINE L1 5699 5999 -152 216 200 0 0 chr3 113793041 113793086 -104244072 + (TTA)n Simple_repeat Simple_repeat 2 46 0 419 256 67 0 chr3 113793483 113793573 -104243585 + FLAM_A SINE Alu 1 96 -37 306 183 0 0 chr3 113793596 113793667 -104243491 + (TA)n Simple_repeat Simple_repeat 2 72 0 205 186 23 0 chr3 113793813 113793856 -104243302 + (TG)n Simple_repeat Simple_repeat 1 44 0 928 236 20 45 chr3 113793870 113794116 -104243042 + MLT1D LTR MaLR 266 505 0 227 276 17 0 chr3 113794136 113794194 -104242964 - LTR16C LTR ERVL -222 269 211 370 394 33 39 chr3 113794445 113794752 -104242406 + L2 LINE L2 2967 3271 -1 1704 258 55 46 chr3 113795995 113796581 -104240577 + MLT1E LTR MaLR 3 593 0 217 336 71 14 chr3 113796717 113796857 -104240301 + MIR SINE MIR 109 256 -6 204 327 49 37 chr3 113796871 113797033 -104240125 + L2 LINE L2 2890 3053 -219 28 0 0 0 chr3 113798355 113798383 -104238775 + AT_rich Low_complexity Low_complexity 1 28 0 253 248 158 20 chr3 113799011 113799112 -104238046 + L3 LINE CR1 1246 1360 -217 217 374 12 12 chr3 113799175 113799258 -104237900 + L3 LINE CR1 1484 1566 -11 1190 221 120 43 chr3 113799744 113800120 -104237038 - MLT2D LTR ERVL 0 414 10 634 213 16 91 chr3 113800613 113800751 -104236407 - L1MA4 LINE L1 0 6300 6188 2453 75 0 0 chr3 113800751 113801059 -104236099 - AluY SINE Alu 0 311 4 634 213 16 91 chr3 113801059 113801173 -104235985 - L1MA4 LINE L1 -112 6188 6067 5950 208 60 15 chr3 113801181 113804342 -104232816 - L1 LINE L1 -3035 3293 4 29 70 0 0 chr3 113804420 113804477 -104232681 + AT_rich Low_complexity Low_complexity 1 57 0 23 68 0 0 chr3 113804577 113804621 -104232537 + AT_rich Low_complexity Low_complexity 1 44 0 2347 81 0 0 chr3 113804970 113805278 -104231880 - AluY SINE Alu 0 311 4 621 278 47 6 chr3 113805475 113805644 -104231514 - MER5B DNA MER1_type 0 178 3 2566 94 11 18 chr3 113806653 113807035 -104230123 - L1PB2 LINE L1 -2 6149 5771 224 298 111 29 chr3 113807051 113807222 -104229936 - MIR SINE MIR -6 256 72 252 280 61 30 chr3 113807225 113807357 -104229801 - L1ME4a LINE L1 -29 6092 5957 11288 140 12 11 chr3 113807463 113810807 -104226351 - L1PA11 LINE L1 -10 6164 2845 1584 134 18 14 chr3 113810790 113811067 -104226091 - L1P5 LINE L1 -352 5799 5522 * 26 50 0 0 chr3 113811362 113811402 -104225756 + AT_rich Low_complexity Low_complexity 1 40 0 1369 47 0 0 chr3 113813166 113813336 -104223822 - L1PA4 LINE L1 -3 6152 5983 2689 25 0 3 chr3 113813336 113813650 -104223508 + L1PA4 LINE L1 5662 5974 -181 2146 135 0 0 chr3 113813832 113814144 -104223014 - AluSx SINE Alu 0 312 1 2293 351 60 46 chr3 113814223 113816035 -104221123 - ERVL LTR ERVL -1098 4666 2826 1835 154 55 30 chr3 113816035 113816399 -104220759 + THE1C LTR MaLR 1 373 -2 2293 351 60 46 chr3 113816399 113816449 -104220709 - ERVL LTR ERVL -2938 2826 2778 1308 176 14 95 chr3 113816449 113816568 -104220590 + L1MA8 LINE L1 5827 5954 -337 2098 107 7 3 chr3 113816568 113816858 -104220300 + AluSc SINE Alu 1 291 -18 1308 176 14 95 chr3 113816858 113817107 -104220051 + L1MA8 LINE L1 5954 6165 -126 331 319 39 62 chr3 113817113 113817451 -104219707 - L1MEd LINE L1 -5124 995 666 564 65 0 0 chr3 113817850 113817927 -104219231 + (TTCC)n Simple_repeat Simple_repeat 3 79 0 1982 140 0 0 chr3 113817928 113818207 -104218951 - AluSx SINE Alu -33 279 1 446 158 57 0 chr3 113818911 113819176 -104217982 + (TA)n Simple_repeat Simple_repeat 1 280 0 1444 243 60 19 chr3 113819331 113819865 -104217293 + L1MEc LINE L1 1793 2348 -4048 300 254 0 0 chr3 113820293 113820348 -104216810 + MER2 DNA MER2_type 291 345 0 237 159 0 0 chr3 113820348 113820392 -104216766 + (TG)n Simple_repeat Simple_repeat 1 44 0 25 51 0 0 chr3 113820848 113820887 -104216271 + AT_rich Low_complexity Low_complexity 1 39 0 330 265 24 46 chr3 113820960 113821162 -104215996 - L1ME LINE L1 -461 5660 5467 238 326 101 0 chr3 113821191 113821320 -104215838 - L3 LINE CR1 -118 1459 1318 216 313 150 25 chr3 113821931 113822091 -104215067 + MIR SINE MIR 78 257 -5 211 338 15 0 chr3 113822597 113822665 -104214493 + L2 LINE L2 3245 3313 0 228 252 122 56 chr3 113822890 113822997 -104214161 - L3 LINE CR1 -498 1079 966 3697 184 12 13 chr3 113823052 113823812 -104213346 - L1MA6 LINE L1 0 6300 5542 1318 172 33 0 chr3 113823812 113824166 -104212992 + L1M2 LINE L1 5138 5500 -745 183 371 89 8 chr3 113826553 113826677 -104210481 + L2 LINE L2 3167 3300 -13 1781 213 77 48 chr3 113826754 113827445 -104209713 - Charlie2 DNA MER1_type -2 2860 2150 1121 276 162 50 chr3 113827435 113828165 -104208993 - Charlie2b DNA MER1_type -1515 1267 430 * 272 57 0 0 chr3 113828165 113828200 -104208958 + (TG)n Simple_repeat Simple_repeat 1 35 0 1121 276 162 50 chr3 113828200 113828308 -104208850 - Charlie2b DNA MER1_type -2352 430 335 7302 39 6 3 chr3 113828317 113829914 -104207244 + L1PA4 LINE L1 4557 6155 0 447 248 99 28 chr3 113830263 113830404 -104206754 - Charlie2b DNA MER1_type -2631 151 1 805 283 30 42 chr3 113830483 113831116 -104206042 - L1ME LINE L1 -616 5548 4925 258 32 0 0 chr3 113831186 113831217 -104205941 + (TG)n Simple_repeat Simple_repeat 2 32 0 623 330 116 28 chr3 113831309 113831706 -104205452 + MLT1H1 LTR MaLR 1 432 -123 261 237 48 48 chr3 113831819 113831931 -104205227 + MLT2F LTR ERVL 354 663 0 455 254 35 9 chr3 113831933 113832047 -104205111 + MLT1H1 LTR MaLR 439 555 0 356 247 100 65 chr3 113832087 113832378 -104204780 - L1ME LINE L1 -1460 4686 4386 344 267 38 29 chr3 113832867 113832972 -104204186 + MLT1G1 LTR MaLR 42 147 -448 1883 243 88 11 chr3 113832996 113833716 -104203442 - L1ME2 LINE L1 -260 5904 5129 2247 95 7 0 chr3 113833758 113834053 -104203105 + AluSp SINE Alu 1 297 -16 356 130 14 0 chr3 113834427 113834496 -104202662 + (TG)n Simple_repeat Simple_repeat 1 70 0 1705 198 39 21 chr3 113835540 113835923 -104201235 + MLT1B LTR MaLR 1 390 0 433 198 16 8 chr3 113836294 113836392 -104200766 + MER5A DNA MER1_type 4 103 -86 21 0 0 0 chr3 113837443 113837464 -104199694 + AT_rich Low_complexity Low_complexity 1 21 0 2209 232 5 25 chr3 113837691 113838281 -104198877 + L1MB8 LINE L1 3823 4400 -1746 1379 116 52 12 chr3 113838284 113838534 -104198624 + L1MA4 LINE L1 5881 6140 -160 3597 188 31 48 chr3 113838550 113839424 -104197734 + L1MB8 LINE L1 5315 6173 -5 2250 104 0 0 chr3 113840153 113840460 -104196698 + AluSx SINE Alu 1 307 -5 244 159 16 16 chr3 113840642 113840705 -104196453 + GA-rich Low_complexity Low_complexity 2 64 0 2011 192 41 31 chr3 113841656 113842166 -104194992 - L1MA8 LINE L1 0 6291 5777 243 200 0 20 chr3 113842166 113842216 -104194942 + (CATA)n Simple_repeat Simple_repeat 1 49 0 380 165 82 21 chr3 113842222 113842319 -104194839 - L1MA8 LINE L1 -507 5793 5691 625 111 28 9 chr3 113842563 113842671 -104194487 - L1MA5 LINE L1 -4 6296 6187 299 135 0 19 chr3 113842791 113842843 -104194315 + L1MA5 LINE L1 6197 6247 -53 * 3732 159 13 21 chr3 113842837 113843517 -104193641 - L1MA6 LINE L1 -118 6182 5508 562 200 45 0 chr3 113843533 113843643 -104193515 - L1MC3 LINE L1 -503 7282 7168 267 279 70 0 chr3 113843735 113843821 -104193337 + MIR SINE MIR 43 134 -74 2423 99 31 6 chr3 113845234 113845587 -104191571 - THE1B LTR MaLR 0 364 3 23 97 0 0 chr3 113845973 113846045 -104191113 + AT_rich Low_complexity Low_complexity 1 72 0 235 277 108 12 chr3 113846196 113846279 -104190879 + L2 LINE L2 3223 3313 0 261 279 139 51 chr3 113847423 113847504 -104189654 - MIR SINE MIR -14 248 176 2077 104 20 24 chr3 113847504 113847802 -104189356 - AluSx SINE Alu -15 297 1 261 279 139 51 chr3 113847802 113847878 -104189280 - MIR SINE MIR -86 176 77 21 0 0 0 chr3 113848226 113848247 -104188911 + AT_rich Low_complexity Low_complexity 1 21 0 28 61 0 0 chr3 113849716 113849765 -104187393 + AT_rich Low_complexity Low_complexity 1 49 0 191 143 0 54 chr3 113850826 113850882 -104186276 + (T)n Simple_repeat Simple_repeat 1 53 0 1269 161 4 38 chr3 113850984 113851220 -104185938 - MLT1A1 LTR MaLR 0 365 138 798 146 23 0 chr3 113851398 113851528 -104185630 - MLT1A1 LTR MaLR -229 136 4 894 221 17 0 chr3 113851686 113851867 -104185291 + L1PA16 LINE L1 5818 6001 -165 416 172 35 0 chr3 113851866 113851953 -104185205 + L1PA16 LINE L1 5913 6002 -164 * 811 218 34 33 chr3 113851952 113852199 -104184959 + L1PB4 LINE L1 5913 6289 -14 240 333 10 10 chr3 113852200 113852302 -104184856 - L1ME LINE L1 -577 5587 5486 2111 174 51 7 chr3 113852881 113853296 -104183862 + Tigger2a DNA MER2_type 2 434 0 1573 28 0 0 chr3 113853386 113853568 -104183590 + L1P1 LINE L1 4064 4245 -1901 3830 34 0 4 chr3 113853774 113854264 -104182894 - L1PA4 LINE L1 0 6155 5686 2820 19 0 0 chr3 113854264 113854587 -104182571 + L1PA4 LINE L1 5355 5677 -478 205 186 0 0 chr3 113854682 113854725 -104182433 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 204 97 0 0 chr3 113854931 113854962 -104182196 + (TG)n Simple_repeat Simple_repeat 2 32 0 1996 115 3 10 chr3 113856817 113857113 -104180045 + AluSg SINE Alu 1 294 -16 685 301 34 38 chr3 113857501 113857740 -104179418 + MIR SINE MIR 18 255 -7 1824 100 83 17 chr3 113857741 113858031 -104179127 - AluSc SINE Alu 0 309 1 22 56 0 0 chr3 113858660 113858696 -104178462 + AT_rich Low_complexity Low_complexity 1 36 0 608 270 87 36 chr3 113858881 113859077 -104178081 - MIR SINE MIR -15 247 42 272 299 0 0 chr3 113859926 113859993 -104177165 - MIR SINE MIR -136 126 60 3429 184 15 33 chr3 113860379 113861113 -104176045 + L1MB2 LINE L1 5449 6169 -2 303 143 0 20 chr3 113861134 113861183 -104175975 - MER5B DNA MER1_type -129 49 2 347 200 15 0 chr3 113861197 113861262 -104175896 + MER5A DNA MER1_type 1 66 -123 2679 58 0 0 chr3 113862362 113862687 -104174471 - LTR17 LTR ERV1 -454 326 2 1533 87 0 0 chr3 113862688 113862883 -104174275 - HERV17 LTR ERV1 0 8626 8432 21 0 0 0 chr3 113862926 113862947 -104174211 + AT_rich Low_complexity Low_complexity 1 21 0 1049 252 222 23 chr3 113863034 113863601 -104173557 - L1MC4 LINE L1 -138 7904 7225 804 58 0 0 chr3 113863627 113863731 -104173427 - L1MA1 LINE L1 -4 6298 6195 4749 175 29 48 chr3 113863732 113863924 -104173234 - L1M1 LINE L1 -5918 1647 1453 2139 122 0 0 chr3 113863924 113864220 -104172938 + AluSc SINE Alu 1 296 -13 4749 175 29 48 chr3 113864220 113864947 -104172211 - L1M1 LINE L1 -6112 1453 745 537 257 15 7 chr3 113864952 113865088 -104172070 - L1M1 LINE L1 -7031 534 398 3150 231 23 8 chr3 113865509 113866213 -104170945 - L1M1 LINE L1 -6830 735 22 558 265 54 0 chr3 113866223 113866427 -104170731 - L1MC4 LINE L1 -802 7240 7026 2294 264 57 14 chr3 113866485 113867403 -104169755 - L1ME1 LINE L1 -15 6151 5190 82 43 0 0 chr3 113867429 113867546 -104169612 + AT_rich Low_complexity Low_complexity 1 117 0 269 172 40 20 chr3 113867550 113867672 -104169486 + (TTA)n Simple_repeat Simple_repeat 3 103 0 337 170 67 24 chr3 113867583 113867629 -104169529 + (TTATA)n Simple_repeat Simple_repeat 5 48 -128 183 42 0 0 chr3 113867629 113867653 -104169505 + (TATAA)n Simple_repeat Simple_repeat 3 26 0 337 170 67 24 chr3 113867653 113867771 -104169387 + (TTATA)n Simple_repeat Simple_repeat 48 176 0 340 118 71 12 chr3 113867831 113867916 -104169242 - L1ME1 LINE L1 -951 5195 5106 481 331 70 8 chr3 113868160 113868402 -104168756 - L1MEc LINE L1 -6109 287 31 2027 117 23 19 chr3 113869625 113869934 -104167224 + AluSx SINE Alu 1 310 -2 760 184 147 6 chr3 113870022 113870185 -104166973 - MER5A DNA MER1_type -1 188 3 275 284 90 36 chr3 113871347 113871525 -104165633 - MIR3 SINE MIR -3 205 20 327 331 27 27 chr3 113872231 113872379 -104164779 - MIR3 SINE MIR -9 199 52 199 364 64 36 chr3 113873144 113873254 -104163904 + MIR SINE MIR 20 132 -76 204 283 0 0 chr3 113874735 113874781 -104162377 - L2 LINE L2 -4 3268 3223 581 193 27 64 chr3 113875516 113875703 -104161455 + MER46C DNA MER2_type 19 198 -140 2562 50 0 0 chr3 113875751 113876054 -104161104 + AluY SINE Alu 1 303 -8 26 74 0 0 chr3 113876089 113876143 -104161015 + AT_rich Low_complexity Low_complexity 1 54 0 888 283 17 0 chr3 113876190 113876423 -104160735 + MIR SINE MIR 1 237 -25 538 296 78 84 chr3 113876485 113876640 -104160518 + L1ME3A LINE L1 4762 4916 -1230 2096 117 4 0 chr3 113876640 113876976 -104160182 - AluY SINE Alu 0 337 1 538 296 78 84 chr3 113876976 113877316 -104159842 + L1ME3A LINE L1 4916 5255 -891 1013 278 87 34 chr3 113877319 113877971 -104159187 + L1ME3A LINE L1 5259 5945 -225 4302 22 0 0 chr3 113878109 113878605 -104158553 - L1PA3 LINE L1 -16 6139 5644 6255 115 94 7 chr3 113878614 113879765 -104157393 - L1PBa LINE L1 -3776 3086 1835 944 149 16 48 chr3 113879758 113879946 -104157212 - L1PBa LINE L1 -6048 815 634 * 539 179 9 0 chr3 113879946 113880052 -104157106 - L1PBa LINE L1 -6663 200 94 2354 77 0 7 chr3 113880267 113880564 -104156594 + AluY SINE Alu 1 295 -16 180 0 0 0 chr3 113880564 113880584 -104156574 + (TA)n Simple_repeat Simple_repeat 2 21 0 2497 79 38 0 chr3 113881074 113881416 -104155742 + THE1A LTR MaLR 1 355 0 630 187 0 8 chr3 113881899 113882022 -104155136 - L1PBa LINE L1 -6739 124 3 281 249 57 115 chr3 113882073 113882282 -104154876 - HAL1 LINE L1 -1556 951 755 266 291 103 43 chr3 113882549 113882783 -104154375 - HAL1 LINE L1 -1986 521 274 435 37 0 0 chr3 113883028 113883082 -104154076 + MADE1 DNA Mariner 1 54 -26 2270 100 0 3 chr3 113884250 113884550 -104152608 + AluSg SINE Alu 1 299 -11 363 332 175 14 chr3 113884855 113885072 -104152086 + MIR SINE MIR 2 253 -9 587 349 146 17 chr3 113886261 113886611 -104150547 - LTR16A LTR ERVL -1 449 55 951 207 19 109 chr3 113886681 113886947 -104150211 - MLT1B LTR MaLR 0 383 133 31 44 0 0 chr3 113886990 113887035 -104150123 + AT_rich Low_complexity Low_complexity 1 45 0 209 408 10 10 chr3 113888459 113888562 -104148596 + L2 LINE L2 3167 3269 -3 2132 120 10 0 chr3 113889551 113889851 -104147307 - AluSx SINE Alu -9 303 1 275 254 42 0 chr3 113890122 113890193 -104146965 + L2 LINE L2 3224 3297 -16 889 281 114 52 chr3 113891044 113891563 -104145595 + MLT1H1 LTR MaLR 3 553 -2 308 171 57 14 chr3 113891865 113891935 -104145223 - MIR SINE MIR -112 150 78 457 325 26 0 chr3 113891994 113892145 -104145013 + L2 LINE L2 3118 3272 0 222 0 79 0 chr3 113892973 113893011 -104144147 + (CAA)n Simple_repeat Simple_repeat 2 42 0 2287 101 0 7 chr3 113893349 113893655 -104143503 + AluSx SINE Alu 1 304 -8 334 194 11 11 chr3 113893655 113893737 -104143421 + GA-rich Low_complexity Low_complexity 10 94 0 2103 84 0 71 chr3 113894460 113894771 -104142387 - AluY SINE Alu -22 289 1 22 35 0 0 chr3 113895019 113895048 -104142110 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 113895057 113895078 -104142080 + AT_rich Low_complexity Low_complexity 1 21 0 322 356 0 17 chr3 113895706 113895821 -104141337 - MIR3 SINE MIR -36 172 60 274 343 57 7 chr3 113897061 113897138 -104140020 - L2 LINE L2 0 3313 3241 1138 145 28 5 chr3 113897138 113897352 -104139806 + L1MB3 LINE L1 5961 6179 -4 274 343 57 7 chr3 113897352 113897414 -104139744 - L2 LINE L2 -72 3241 3167 2161 112 0 3 chr3 113897605 113897900 -104139258 + AluY SINE Alu 4 297 -14 301 346 7 0 chr3 113898007 113898143 -104139015 + L2 LINE L2 1573 1709 -1605 230 270 22 56 chr3 113899802 113899891 -104137267 - MIR SINE MIR -64 198 113 482 306 111 37 chr3 113900170 113900467 -104136691 - MLT1J2 LTR MaLR -24 426 108 1526 252 9 9 chr3 113900477 113900826 -104136332 - MLT1A1 LTR MaLR -11 354 6 268 224 35 59 chr3 113900842 113900927 -104136231 - MLT1J2 LTR MaLR -366 84 2 204 273 15 30 chr3 113901035 113901101 -104136057 + MIR SINE MIR 88 147 -61 25 31 0 0 chr3 113901622 113901654 -104135504 + AT_rich Low_complexity Low_complexity 1 32 0 2787 53 8 0 chr3 113901662 113902009 -104135149 - L1PA7 LINE L1 -531 5623 5271 3801 65 2 10 chr3 113902009 113902514 -104134644 + L1PA7 LINE L1 5651 6152 -2 1092 184 0 0 chr3 113902526 113902705 -104134453 + AluJb SINE Alu 129 307 -5 255 235 0 12 chr3 113902708 113902789 -104134369 - L1MC4 LINE L1 -1339 6703 6624 224 210 0 16 chr3 113902813 113902875 -104134283 + (TA)n Simple_repeat Simple_repeat 2 62 0 591 192 42 0 chr3 113902888 113903008 -104134150 + MER4C LTR ERV1 311 435 -30 844 211 11 0 chr3 113904368 113904543 -104132615 + MER5B DNA MER1_type 2 178 0 373 284 80 19 chr3 113907343 113907505 -104129653 + MLT1J LTR MaLR 1 172 -339 231 385 78 51 chr3 113907559 113907816 -104129342 + L2 LINE L2 965 1228 -2086 211 139 0 23 chr3 113907817 113907860 -104129298 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 808 181 0 0 chr3 113907902 113908035 -104129123 - FLAM_C SINE Alu 0 133 1 970 217 4 4 chr3 113908038 113908264 -104128894 - L1MB3 LINE L1 -1 6182 5957 7602 200 102 48 chr3 113908266 113909457 -104127701 - L1M4c LINE L1 -4188 2196 1071 2532 56 0 0 chr3 113909457 113909760 -104127398 - AluY SINE Alu -8 303 1 7602 200 102 48 chr3 113909760 113909989 -104127169 - L1M4c LINE L1 -5313 1071 856 198 0 0 0 chr3 113909989 113910011 -104127147 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 7602 200 102 48 chr3 113910011 113910646 -104126512 - L1M4c LINE L1 -5528 856 29 2053 305 97 23 chr3 113910771 113911691 -104125467 + L2 LINE L2 1328 2315 -999 255 197 13 53 chr3 113911702 113911778 -104125380 - LTR41 LTR ERVL -6 767 695 393 193 168 37 chr3 113912204 113912365 -104124793 - LTR41 LTR ERVL -591 182 1 2111 272 33 20 chr3 113912371 113913121 -104124037 + L2 LINE L2 2317 3074 -239 209 306 0 0 chr3 113913124 113913186 -104123972 + L2 LINE L2 3251 3312 -1 365 312 82 18 chr3 113913213 113913383 -104123775 + MLT1J LTR MaLR 310 490 -21 520 313 42 12 chr3 113913418 113913584 -104123574 - MER5B DNA MER1_type 0 178 8 23 33 0 0 chr3 113913612 113913642 -104123516 + AT_rich Low_complexity Low_complexity 1 30 0 842 194 0 59 chr3 113913642 113913828 -104123330 + MER8 DNA MER2_type 3 177 -62 305 213 0 0 chr3 113913876 113913937 -104123221 - Tigger2a DNA MER2_type -373 61 1 24 0 0 0 chr3 113914545 113914569 -104122589 + AT_rich Low_complexity Low_complexity 1 24 0 2246 112 0 0 chr3 113914669 113914964 -104122194 + AluSg SINE Alu 1 295 -15 3184 95 11 9 chr3 113915032 113915236 -104121922 + MLT2A2 LTR ERVL 1 203 -250 387 0 0 0 chr3 113915236 113915279 -104121879 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 3184 95 11 9 chr3 113915279 113915526 -104121632 + MLT2A2 LTR ERVL 203 453 0 295 307 61 18 chr3 113915719 113915833 -104121325 + MIR SINE MIR 114 232 -30 1678 171 50 26 chr3 113915931 113916312 -104120846 + MLT1B LTR MaLR 1 390 0 2087 103 14 14 chr3 113917107 113917398 -104119760 - AluSg SINE Alu -19 291 1 564 306 95 45 chr3 113917572 113917994 -104119164 - LTR67 LTR ERVL -3 554 112 301 265 10 49 chr3 113919259 113919361 -104117797 + MIR SINE MIR 40 137 -125 2292 47 17 17 chr3 113920937 113921235 -104115923 - AluY SINE Alu -13 298 1 544 159 5 154 chr3 113921796 113922016 -104115142 + MER53 DNA DNA 3 189 0 230 283 11 11 chr3 113922022 113922114 -104115044 - MLT1K LTR MaLR -356 232 141 294 132 0 0 chr3 113923183 113923236 -104113922 + (CA)n Simple_repeat Simple_repeat 2 54 0 210 138 69 86 chr3 113923533 113923591 -104113567 - MER91 DNA MER1_type -19 121 65 28508 104 12 13 chr3 113924062 113929759 -104107399 - L1PA7 LINE L1 -4 6465 758 371 303 75 79 chr3 113930196 113930437 -104106721 + MIR SINE MIR 20 259 -3 1942 161 22 57 chr3 113932353 113932757 -104104401 - MLT1B LTR MaLR 0 390 1 660 290 68 38 chr3 113933180 113933577 -104103581 - LTR33A LTR ERVL -24 499 91 1340 223 140 16 chr3 113933803 113934247 -104102911 + MLT1D LTR MaLR 7 505 0 1540 116 0 5 chr3 113934634 113934874 -104102284 - AluSc SINE Alu 0 309 82 332 276 0 0 chr3 113934923 113934999 -104102159 - L1MC4 LINE L1 -1319 6723 6648 240 143 0 0 chr3 113935003 113935045 -104102113 + (GA)n Simple_repeat Simple_repeat 2 43 0 350 261 92 41 chr3 113935227 113935291 -104101867 + L1MC/D LINE L1 4415 4474 -1672 888 118 0 0 chr3 113935291 113935427 -104101731 - L1PA13 LINE L1 -7 6156 6021 350 261 92 41 chr3 113935427 113935557 -104101601 + L1MC/D LINE L1 4474 4619 -1527 259 305 116 0 chr3 113935630 113935820 -104101338 + L1MC/D LINE L1 5559 5770 -2038 384 325 74 40 chr3 113936014 113936365 -104100793 - L1 LINE L1 -3304 2842 2480 390 280 63 14 chr3 113936766 113936973 -104100185 - HAL1 LINE L1 -823 1684 1468 1542 215 3 0 chr3 113937423 113937716 -104099442 - AluJb SINE Alu -18 294 1 1584 173 66 17 chr3 113937720 113938009 -104099149 - AluJo SINE Alu -9 303 1 309 323 70 32 chr3 113938572 113938730 -104098428 + MIR SINE MIR 20 183 -79 854 216 34 55 chr3 113939045 113939337 -104097821 + MER83C LTR ERV1 49 334 -39 326 240 186 8 chr3 113941602 113941734 -104095424 + MIR3 SINE MIR 47 208 0 2294 170 65 0 chr3 113942627 113943027 -104094131 + MSTB LTR MaLR 1 426 0 256 294 68 57 chr3 113943651 113943828 -104093330 - HAL1 LINE L1 -2043 464 286 1707 97 47 10 chr3 113944024 113944354 -104092804 + MLT2A2 LTR ERVL 1 414 -39 264 30 0 0 chr3 113944354 113944387 -104092771 + (CA)n Simple_repeat Simple_repeat 2 34 0 1707 97 47 10 chr3 113944387 113944427 -104092731 + MLT2A2 LTR ERVL 414 451 -2 40853 80 12 4 chr3 113944429 113950034 -104087124 + HERVL-A2-A2 LTR ERVL 1 5654 0 2954 78 76 0 chr3 113950034 113950455 -104086703 + MLT2A2 LTR ERVL 1 453 0 24 0 0 0 chr3 113950568 113950592 -104086566 + AT_rich Low_complexity Low_complexity 1 24 0 273 350 49 8 chr3 113951098 113951221 -104085937 + L2 LINE L2 3136 3263 -9 367 285 124 15 chr3 113951325 113951462 -104085696 - MIR SINE MIR -61 201 50 7187 164 16 23 chr3 113952471 113955048 -104082110 - L1PB1 LINE L1 0 6151 3591 463 376 27 0 chr3 113955073 113955331 -104081827 + LTR16C LTR ERVL 71 335 -156 1196 194 111 50 chr3 113955355 113955703 -104081455 - MSTD LTR MaLR 0 396 41 1895 169 0 13 chr3 113955703 113956016 -104081142 - AluJo SINE Alu -3 309 1 1196 194 111 50 chr3 113956016 113956059 -104081099 - MSTD LTR MaLR -355 41 2 345 47 0 0 chr3 113956574 113956617 -104080541 + (CA)n Simple_repeat Simple_repeat 2 44 0 210 91 0 0 chr3 113956617 113956650 -104080508 + (GA)n Simple_repeat Simple_repeat 1 33 0 409 105 70 23 chr3 113956684 113956770 -104080388 - MLT1D LTR MaLR 0 505 416 398 325 52 19 chr3 113957012 113957166 -104079992 + MIR SINE MIR 23 181 -81 284 319 41 74 chr3 113957264 113957534 -104079624 + HAL1 LINE L1 21 281 -2226 2100 164 26 3 chr3 113957551 113957928 -104079230 + L1MC1 LINE L1 5943 6328 -5 623 265 85 51 chr3 113957948 113957994 -104079164 + HAL1 LINE L1 1048 1091 -1416 2185 94 35 0 chr3 113957994 113958281 -104078877 - AluSx SINE Alu -15 297 1 623 265 85 51 chr3 113958281 113958618 -104078540 + HAL1 LINE L1 1091 1415 -1092 180 97 0 0 chr3 113958618 113958649 -104078509 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 623 265 85 51 chr3 113958649 113958674 -104078484 + HAL1 LINE L1 1415 1438 -1069 2602 79 11 3 chr3 113958674 113959030 -104078128 + L1PA8 LINE L1 5806 6164 -8 623 265 85 51 chr3 113959030 113959148 -104078010 + HAL1 LINE L1 1438 1594 -913 266 312 152 50 chr3 113959209 113959610 -104077548 - LTR67 LTR ERVL -93 464 23 24 0 0 0 chr3 113959661 113959685 -104077473 + AT_rich Low_complexity Low_complexity 1 24 0 28475 31 22 1 chr3 113959686 113965077 -104072081 - L1PA3 LINE L1 -2 6153 620 558 28 0 0 chr3 113965072 113965143 -104072015 - L1PA3 LINE L1 -6072 74 4 * 698 258 0 0 chr3 113965157 113965320 -104071838 + HAL1 LINE L1 1595 1757 -750 899 136 12 19 chr3 113965339 113965501 -104071657 + L1PB2 LINE L1 5989 6149 -2 290 206 14 0 chr3 113965534 113965607 -104071551 + GA-rich Low_complexity Low_complexity 3 76 0 250 238 0 62 chr3 113965651 113965731 -104071427 + HAL1 LINE L1 1818 1892 -615 2532 4 0 0 chr3 113965852 113966125 -104071033 + AluYa5 SINE Alu 36 308 -3 337 329 43 24 chr3 113966158 113966575 -104070583 + HAL1 LINE L1 2076 2500 -7 7054 20 0 2 chr3 113966930 113967740 -104069418 + L1PA3 LINE L1 5344 6151 -4 311 246 164 0 chr3 113967987 113968097 -104069061 - MIR SINE MIR -54 208 81 431 325 44 15 chr3 113969762 113969968 -104067190 + MIR SINE MIR 51 262 0 1314 88 44 5 chr3 113971033 113971237 -104065921 - L1PA13 LINE L1 0 6163 5952 809 223 41 16 chr3 113971267 113971509 -104065649 + LTR16A1 LTR ERVL 209 456 -1 545 215 159 12 chr3 113971565 113971603 -104065555 - MLT2D LTR ERVL -2 412 381 354 23 0 0 chr3 113971603 113971646 -104065512 + (TG)n Simple_repeat Simple_repeat 1 43 0 261 0 0 0 chr3 113971652 113971681 -104065477 + (GA)n Simple_repeat Simple_repeat 2 30 0 545 215 159 12 chr3 113971681 113971798 -104065360 - MLT2D LTR ERVL -37 377 226 409 289 22 22 chr3 113971818 113972066 -104065092 - L1ME LINE L1 -425 5696 5446 1709 88 63 18 chr3 113972454 113972739 -104064419 + THE1C LTR MaLR 1 298 -77 22380 51 0 6 chr3 113972839 113975891 -104061267 - L1P LINE L1 -1954 4192 1157 27 35 0 0 chr3 113976304 113976333 -104060825 + GC_rich Low_complexity Low_complexity 1 29 0 13638 41 4 8 chr3 113976335 113978790 -104058368 + L1PA3 LINE L1 3699 6155 0 771 116 8 16 chr3 113978851 113978972 -104058186 - FLAM_C SINE Alu -10 133 14 1796 151 7 13 chr3 113979091 113979389 -104057769 + AluSx SINE Alu 3 298 -14 403 268 21 0 chr3 113979401 113979498 -104057660 + FRAM SINE Alu 1 99 -77 19197 58 3 1 chr3 113979600 113982438 -104054720 - L1P2 LINE L1 -513 5641 2799 16957 85 4 0 chr3 113982431 113984823 -104052335 - L1P2 LINE L1 -3745 2401 1 * 6002 56 14 4 chr3 113984826 113985659 -104051499 + L1PA6 LINE L1 1833 2674 -3472 816 82 8 4 chr3 113985782 113985886 -104051272 + L1PA6 LINE L1 2967 3076 -3070 7028 60 1 1 chr3 113985886 113986942 -104050216 + L1PA6 LINE L1 5097 6151 -3 816 82 8 4 chr3 113986942 113986965 -104050193 + L1PA6 LINE L1 3076 3097 -3049 395 293 70 13 chr3 113987579 113987917 -104049241 + L1M1 LINE L1 4727 5651 -651 21 0 0 0 chr3 113988058 113988079 -104049079 + AT_rich Low_complexity Low_complexity 1 21 0 984 226 47 47 chr3 113988739 113989018 -104048140 - MER31-int LTR ERV1 -92 4844 4566 294 183 24 61 chr3 113989112 113989194 -104047964 - MER31-int LTR ERV1 -375 4561 4483 2338 185 30 108 chr3 113989261 113989974 -104047184 - MER31-int LTR ERV1 -466 4470 3814 1253 202 105 98 chr3 113989983 113990735 -104046423 + LTR1B LTR ERV1 1 757 -69 736 215 5 82 chr3 113990770 113990944 -104046214 + MLT1A2 LTR MaLR 173 328 -46 1570 152 97 4 chr3 113990944 113991213 -104045945 - AluSx SINE Alu -18 294 1 736 215 5 82 chr3 113991213 113991257 -104045901 + MLT1A2 LTR MaLR 328 374 0 706 249 23 42 chr3 113991257 113991957 -104045201 - MER31-int LTR ERV1 -1530 3406 2638 26292 49 1 15 chr3 113992024 113995570 -104041588 + L1P LINE L1 3 3499 -2647 2179 193 21 37 chr3 113995677 113995893 -104041265 - L1M2 LINE L1 -743 5403 5185 297 51 0 0 chr3 113995893 113995932 -104041226 + (TG)n Simple_repeat Simple_repeat 2 40 0 2179 193 21 37 chr3 113995932 113996401 -104040757 - L1M2 LINE L1 -961 5185 4849 655 216 60 10 chr3 113996448 113996647 -104040511 + L1P5 LINE L1 8 216 -6647 * 13564 199 15 5 chr3 113996624 114001635 -104035523 + L1P5 LINE L1 1392 6491 -376 23 78 0 0 chr3 114001940 114001991 -104035167 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr3 114002054 114002075 -104035083 + AT_rich Low_complexity Low_complexity 1 21 0 2118 149 24 2 chr3 114002397 114002821 -104034337 - L1M2 LINE L1 -1397 4749 4317 637 175 36 0 chr3 114002826 114002963 -104034195 - L1MA5A LINE L1 0 6297 6156 338 309 114 72 chr3 114003121 114003203 -104033955 + L1M4 LINE L1 3900 3977 -2169 2182 132 0 0 chr3 114003203 114003506 -104033652 + AluSx SINE Alu 1 303 -9 14361 139 24 8 chr3 114003506 114004658 -104032500 + Tigger1 DNA MER2_type 3 1135 -1283 2365 81 3 0 chr3 114004658 114004955 -104032203 + AluY SINE Alu 1 298 -13 14361 139 24 8 chr3 114004955 114006179 -104030979 + Tigger1 DNA MER2_type 1135 2418 0 338 309 114 72 chr3 114006179 114006331 -104030827 + L1M4 LINE L1 3976 4145 -2001 285 349 71 8 chr3 114006524 114006650 -104030508 - L2 LINE L2 -5 3267 3134 1997 120 0 38 chr3 114006693 114007009 -104030149 - AluSg SINE Alu -6 304 1 1272 266 77 14 chr3 114007277 114007695 -104029463 + LTR40a LTR ERVL 76 519 0 621 200 77 108 chr3 114008014 114008472 -104028686 + L1MC4 LINE L1 7631 8036 -6 31 26 0 0 chr3 114008530 114008568 -104028590 + AT_rich Low_complexity Low_complexity 1 38 0 42 48 0 0 chr3 114008645 114008708 -104028450 + AT_rich Low_complexity Low_complexity 1 63 0 21 0 0 0 chr3 114009041 114009062 -104028096 + AT_rich Low_complexity Low_complexity 1 21 0 309 89 0 0 chr3 114009084 114009129 -104028029 + (TC)n Simple_repeat Simple_repeat 2 46 0 183 100 0 0 chr3 114009129 114009159 -104027999 + (CA)n Simple_repeat Simple_repeat 1 30 0 1989 135 10 0 chr3 114010966 114011255 -104025903 + AluSx SINE Alu 1 292 -20 424 246 92 28 chr3 114011661 114011803 -104025355 - MIR SINE MIR -34 228 78 24 0 0 0 chr3 114012463 114012487 -104024671 + AT_rich Low_complexity Low_complexity 1 24 0 2098 131 0 0 chr3 114013198 114013489 -104023669 + AluSx SINE Alu 1 291 -21 259 254 0 0 chr3 114014011 114014070 -104023088 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 3441 110 8 11 chr3 114014656 114015313 -104021845 + L1P4 LINE L1 5111 5770 -396 660 57 0 0 chr3 114015314 114015402 -104021756 + L1PA5 LINE L1 6066 6153 -1 264 224 0 0 chr3 114015495 114015553 -104021605 + L1MD2 LINE L1 6139 6196 -163 1806 148 19 3 chr3 114015563 114015910 -104021248 + L1PA16 LINE L1 5770 6156 -10 189 0 0 0 chr3 114015938 114015959 -104021199 + (CA)n Simple_repeat Simple_repeat 2 22 0 1976 167 50 115 chr3 114016003 114016679 -104020479 + MER65-int LTR ERV1 1384 2015 -2856 292 95 0 0 chr3 114016685 114016727 -104020431 + L1P1 LINE L1 5770 5811 -344 306 241 99 14 chr3 114018870 114019011 -104018147 + L1ME3A LINE L1 5988 6140 -30 225 0 0 0 chr3 114019647 114019672 -104017486 + (CA)n Simple_repeat Simple_repeat 1 25 0 472 307 35 45 chr3 114019825 114020027 -104017131 + MIR SINE MIR 18 217 -45 309 188 0 0 chr3 114020110 114020195 -104016963 + (TA)n Simple_repeat Simple_repeat 1 85 0 360 283 0 11 chr3 114020195 114020287 -104016871 + L1MC4 LINE L1 6613 6703 -1339 21 0 0 0 chr3 114020287 114020308 -104016850 + AT_rich Low_complexity Low_complexity 1 21 0 271 183 50 17 chr3 114020308 114020368 -104016790 - MER58 DNA MER1_type 0 2420 2359 381 286 51 0 chr3 114020587 114020685 -104016473 - MIR SINE MIR -65 143 41 1685 129 28 8 chr3 114020728 114020983 -104016175 + AluJb SINE Alu 1 260 -52 2258 92 0 16 chr3 114021074 114021380 -104015778 - AluSx SINE Alu -11 301 1 2198 167 38 9 chr3 114022836 114023256 -104013902 - MSTB1 LTR MaLR 0 432 1 424 358 22 8 chr3 114023429 114023563 -104013595 - L2 LINE L2 0 3272 3137 349 233 155 16 chr3 114023879 114023910 -104013248 + L1MC4 LINE L1 7889 7914 -128 531 45 0 0 chr3 114023910 114023976 -104013182 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 349 233 155 16 chr3 114023976 114024073 -104013085 + L1MC4 LINE L1 7914 8035 -7 1909 165 0 0 chr3 114024094 114024391 -104012767 + AluSx SINE Alu 3 299 -13 4862 205 32 71 chr3 114024414 114024650 -104012508 + L1MB7 LINE L1 3691 3935 -2211 1363 178 117 14 chr3 114024650 114024931 -104012227 + AluJo SINE Alu 1 310 -2 4862 205 32 71 chr3 114024931 114025729 -104011429 + L1MB7 LINE L1 3935 4723 -1423 498 111 0 0 chr3 114025729 114025801 -104011357 - MADE1 DNA Mariner 0 80 9 4862 205 32 71 chr3 114025801 114026231 -104010927 + L1MB7 LINE L1 4723 5168 -978 817 153 0 0 chr3 114026260 114026378 -104010780 + FLAM_C SINE Alu 1 118 -15 3819 199 27 29 chr3 114026415 114026465 -104010693 + L1PA15 LINE L1 4126 4175 -1971 2160 115 10 0 chr3 114026465 114026761 -104010397 + AluSq SINE Alu 1 299 -14 3819 199 27 29 chr3 114026761 114026962 -104010196 + L1PA15 LINE L1 4175 4375 -1771 2065 120 7 7 chr3 114026962 114027261 -104009897 + AluSx SINE Alu 1 299 -13 3819 199 27 29 chr3 114027261 114027925 -104009233 + L1PA15 LINE L1 4375 5040 -1106 4113 139 11 3 chr3 114027925 114028574 -104008584 + L1PA15 LINE L1 5512 6165 0 3836 169 34 65 chr3 114028577 114029473 -104007685 + L1MB7 LINE L1 5195 6058 -126 1531 88 5 0 chr3 114029473 114029667 -104007491 + AluSp SINE Alu 100 294 -19 3836 169 34 65 chr3 114029667 114029780 -104007378 + L1MB7 LINE L1 6058 6173 -11 30 45 0 0 chr3 114030740 114030784 -104006374 + AT_rich Low_complexity Low_complexity 1 44 0 889 90 8 0 chr3 114030872 114030994 -104006164 + AluJb SINE Alu 11 133 -179 2359 141 6 3 chr3 114031008 114031371 -104005787 - THE1B LTR MaLR 0 364 1 7964 158 27 32 chr3 114031388 114032885 -104004273 - THE1B-int LTR MaLR -83 1497 9 2343 128 14 3 chr3 114032913 114033266 -104003892 - THE1B LTR MaLR -7 357 1 995 178 0 6 chr3 114033266 114033429 -104003729 + AluJb SINE Alu 138 299 -13 257 303 38 61 chr3 114033453 114033585 -104003573 - MLT1J LTR MaLR -78 433 305 931 191 37 37 chr3 114034175 114034416 -104002742 - L1PB4 LINE L1 0 6156 5916 4292 175 35 21 chr3 114034537 114034598 -104002560 - L1PB4 LINE L1 -302 5854 5795 240 35 0 0 chr3 114034598 114034627 -104002531 + (TA)n Simple_repeat Simple_repeat 1 29 0 4292 175 35 21 chr3 114034627 114035780 -104001378 - L1PB4 LINE L1 -361 5795 4608 7465 30 0 0 chr3 114035780 114036803 -104000355 - L1PA4 LINE L1 -1 6154 5126 4292 175 35 21 chr3 114036803 114037011 -104000147 - L1PB4 LINE L1 -1548 4608 4404 197 262 0 0 chr3 114037061 114037103 -104000055 - L2 LINE L2 -105 3208 3167 1480 310 101 9 chr3 114037180 114037998 -103999160 - L2 LINE L2 -163 3150 2266 300 253 22 11 chr3 114038036 114038127 -103999031 - L2 LINE L2 -1581 1733 1642 201 283 38 0 chr3 114038187 114038240 -103998918 + MIR3 SINE MIR 120 174 -34 315 238 53 117 chr3 114038750 114039032 -103998126 + L1MC5 LINE L1 6907 7170 -791 1771 150 68 37 chr3 114039205 114039559 -103997599 - THE1C LTR MaLR -5 370 6 394 254 36 74 chr3 114039632 114039646 -103997512 + L1MC5 LINE L1 7502 7515 -446 1884 147 0 38 chr3 114039646 114039965 -103997193 + AluJo SINE Alu 1 307 -5 394 254 36 74 chr3 114039965 114040394 -103996764 + L1MC5 LINE L1 7515 7928 -33 495 191 66 66 chr3 114040655 114040807 -103996351 + L2 LINE L2 3162 3313 0 257 372 128 22 chr3 114040870 114041050 -103996108 + L2 LINE L2 3073 3271 -1 482 319 26 40 chr3 114041369 114041642 -103995516 + L1ME3A LINE L1 5588 5856 -314 921 204 33 0 chr3 114041687 114041868 -103995290 + MER20 DNA MER1_type 32 218 -1 27 0 0 0 chr3 114041980 114042007 -103995151 + AT_rich Low_complexity Low_complexity 1 27 0 25570 32 1 2 chr3 114042150 114046047 -103991111 + L1PA4 LINE L1 2279 6177 0 572 246 112 85 chr3 114046420 114046807 -103990351 + L1MC5 LINE L1 7270 7670 -291 1932 127 69 61 chr3 114046807 114047168 -103989990 + THE1B LTR MaLR 1 364 0 572 246 112 85 chr3 114047168 114047182 -103989976 + L1MC5 LINE L1 7670 7682 -279 22 0 0 0 chr3 114047198 114047220 -103989938 + AT_rich Low_complexity Low_complexity 1 22 0 5208 113 20 8 chr3 114047220 114048054 -103989104 - L1MA2 LINE L1 0 6304 5461 474 229 15 119 chr3 114048317 114048518 -103988640 + LTR67 LTR ERVL 375 554 -3 17721 173 19 65 chr3 114049004 114049038 -103988120 - L1M1 LINE L1 -749 6816 6782 207 69 0 0 chr3 114049038 114049067 -103988091 + (TTA)n Simple_repeat Simple_repeat 3 31 0 1189 54 0 0 chr3 114049067 114049214 -103987944 - L1PA3 LINE L1 -18 6137 5991 17721 173 19 65 chr3 114049214 114049432 -103987726 - L1M1 LINE L1 -782 6783 6557 2243 111 3 0 chr3 114049432 114049729 -103987429 + AluSp SINE Alu 1 298 -15 366 23 0 0 chr3 114049729 114049772 -103987386 + (TA)n Simple_repeat Simple_repeat 1 43 0 17721 173 19 65 chr3 114049772 114050792 -103986366 - L1M1 LINE L1 -1007 6558 5494 2404 70 0 13 chr3 114050792 114051090 -103986068 - AluY SINE Alu -17 294 1 17721 173 19 65 chr3 114051090 114051696 -103985462 - L1M1 LINE L1 -2071 5494 4862 1737 192 0 7 chr3 114051696 114051998 -103985160 - AluJb SINE Alu 0 312 13 17721 173 19 65 chr3 114051998 114052091 -103985067 - L1M1 LINE L1 -2703 4862 4766 1867 117 3 73 chr3 114052091 114052408 -103984750 + AluSx SINE Alu 1 295 -17 17721 173 19 65 chr3 114052408 114053108 -103984050 - L1M1 LINE L1 -2799 4766 4036 2145 80 7 27 chr3 114053108 114053409 -103983749 - AluY SINE Alu -16 295 1 17721 173 19 65 chr3 114053409 114054783 -103982375 - L1M1 LINE L1 -3529 4036 2602 2083 129 10 0 chr3 114054783 114055086 -103982072 + AluSx SINE Alu 1 306 -6 17721 173 19 65 chr3 114055086 114055108 -103982050 - L1M1 LINE L1 -4963 2602 2581 360 109 0 0 chr3 114055108 114055163 -103981995 + Alu SINE Alu 246 300 0 17721 173 19 65 chr3 114055163 114056591 -103980567 - L1M1 LINE L1 -4984 2581 1090 1855 164 3 7 chr3 114056591 114056889 -103980269 + AluJo SINE Alu 1 297 -15 17721 173 19 65 chr3 114056889 114057905 -103979253 - L1M1 LINE L1 -6475 1090 30 884 124 0 0 chr3 114057905 114058034 -103979124 + L1PB1 LINE L1 6022 6150 -1 2148 114 0 0 chr3 114058043 114058344 -103978814 + AluSg SINE Alu 1 301 0 17721 173 19 65 chr3 114058344 114058528 -103978630 - L1M1 LINE L1 -7543 22 981 1898 111 13 63 chr3 114058528 114058843 -103978315 + AluSx SINE Alu 1 299 -13 17721 173 19 65 chr3 114058843 114059771 -103977387 - L1M1 LINE L1 -6583 982 14 32 26 0 0 chr3 114059780 114059819 -103977339 + AT_rich Low_complexity Low_complexity 1 39 0 183 300 0 0 chr3 114060001 114060061 -103977097 + L3b LINE CR1 1144 1203 -380 356 309 32 24 chr3 114060850 114060976 -103976182 + MLT1K LTR MaLR 15 141 -447 1967 179 94 32 chr3 114061258 114061726 -103975432 + MLT1D LTR MaLR 1 497 -8 1877 193 14 8 chr3 114062488 114062851 -103974307 - MLT1A1 LTR MaLR 0 365 1 766 210 7 0 chr3 114063291 114063429 -103973729 + FRAM SINE Alu 26 164 -12 1758 84 0 0 chr3 114063450 114063674 -103973484 + AluSc SINE Alu 87 301 -8 419 221 12 0 chr3 114063837 114063923 -103973235 + L2 LINE L2 3225 3311 -2 933 170 99 11 chr3 114064196 114064378 -103972780 - MER3 DNA MER1_type 0 209 12 184 238 71 0 chr3 114064828 114064870 -103972288 - L3b LINE CR1 -98 1485 1441 1811 180 0 3 chr3 114065518 114065823 -103971335 + AluJo SINE Alu 2 305 -7 443 316 92 14 chr3 114066496 114066714 -103970444 - MIR SINE MIR -1 261 27 1667 174 10 17 chr3 114066890 114067189 -103969969 + AluJo SINE Alu 5 301 -11 25 0 0 0 chr3 114067343 114067368 -103969790 + AT_rich Low_complexity Low_complexity 1 25 0 1666 159 7 14 chr3 114067373 114067629 -103969529 - L1MA9 LINE L1 -371 5941 5686 2074 146 0 3 chr3 114067629 114067938 -103969220 - AluJo SINE Alu -4 308 1 1666 159 7 14 chr3 114067938 114067970 -103969188 - L1MA9 LINE L1 -626 5686 5655 1832 166 20 61 chr3 114067971 114068363 -103968795 + L1MA9 LINE L1 5937 6312 0 563 225 174 6 chr3 114068383 114068561 -103968597 + L1MC3 LINE L1 6520 6727 -1058 1204 121 0 0 chr3 114068561 114068726 -103968432 - AluSg/x SINE Alu 0 312 148 1275 135 67 43 chr3 114068726 114068879 -103968279 + L1MC3 LINE L1 6735 6900 -885 3605 190 53 33 chr3 114068879 114069646 -103967512 + LTR39 LTR ERV1 1 783 0 1275 135 67 43 chr3 114069646 114069774 -103967384 + L1MC3 LINE L1 6900 7023 -762 812 213 6 0 chr3 114069773 114069933 -103967225 + L1MC3 LINE L1 7248 7408 -377 * 4746 199 89 8 chr3 114069947 114071013 -103966145 + L1MA6 LINE L1 6 1157 -5706 15648 189 21 13 chr3 114071017 114073245 -103963913 + L1MA6 LINE L1 1311 3520 -3496 2301 100 0 3 chr3 114073245 114073544 -103963614 - AluSx SINE Alu -13 299 2 15648 189 21 13 chr3 114073544 114075020 -103962138 + L1MA6 LINE L1 3520 4983 -2033 534 82 0 0 chr3 114075020 114075105 -103962053 + (CATAA)n Simple_repeat Simple_repeat 2 86 0 15648 189 21 13 chr3 114075105 114076462 -103960696 + L1MA6 LINE L1 4983 6440 -576 276 100 0 0 chr3 114076462 114076502 -103960656 + (TG)n Simple_repeat Simple_repeat 2 41 0 15648 189 21 13 chr3 114076502 114076798 -103960360 + L1MA6 LINE L1 6440 6732 -284 2551 106 5 3 chr3 114076567 114076934 -103960224 + L1PB1 LINE L1 6499 6866 -1 * 346 208 0 28 chr3 114076930 114077002 -103960156 - L1 LINE L1 -1287 4859 4790 * 1799 171 21 45 chr3 114077003 114077178 -103959980 + L1MC3 LINE L1 7400 7578 -207 1954 174 3 0 chr3 114077178 114077488 -103959670 + AluJb SINE Alu 1 311 -1 1799 171 21 45 chr3 114077488 114077691 -103959467 + L1MC3 LINE L1 7578 7769 -16 2188 126 0 0 chr3 114077695 114078005 -103959153 + AluSx SINE Alu 1 310 -2 2873 246 71 25 chr3 114078026 114079063 -103958095 + L1MEc LINE L1 112 1196 -5200 4793 117 31 20 chr3 114079119 114079881 -103957277 + L1PA16 LINE L1 5387 6157 -9 1108 188 61 9 chr3 114079937 114080150 -103957008 - MLT1F1 LTR MaLR 0 567 344 412 164 26 112 chr3 114080150 114080192 -103956966 + L1ME1 LINE L1 5147 5191 -955 1548 96 5 0 chr3 114080192 114080389 -103956769 + AluSp SINE Alu 103 300 -13 412 164 26 112 chr3 114080389 114080498 -103956660 + L1ME1 LINE L1 5191 5285 -861 1479 63 0 0 chr3 114080503 114080677 -103956481 + AluY SINE Alu 1 174 -137 404 65 0 32 chr3 114080677 114080733 -103956425 + AluY SINE Alu 253 306 -5 2847 236 19 48 chr3 114080735 114081644 -103955514 + L1ME1 LINE L1 5280 6161 -5 3143 193 72 91 chr3 114081656 114081801 -103955357 + L1MC4 LINE L1 7001 7147 -895 2098 146 0 0 chr3 114081801 114082102 -103955056 + AluSx SINE Alu 1 301 -11 3143 193 72 91 chr3 114082102 114082548 -103954610 + L1MC4 LINE L1 7147 7600 -442 1567 103 0 36 chr3 114082548 114082772 -103954386 + AluSg/x SINE Alu 81 296 -16 3143 193 72 91 chr3 114082772 114082915 -103954243 + L1MC4 LINE L1 7600 7744 -298 1232 36 0 0 chr3 114082915 114083053 -103954105 - L1PA7 LINE L1 -6 6148 6011 3143 193 72 91 chr3 114083053 114083378 -103953780 + L1MC4 LINE L1 7744 8042 0 2030 118 0 24 chr3 114083388 114083684 -103953474 + AluSx SINE Alu 1 289 -23 209 33 33 0 chr3 114083687 114083717 -103953441 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 26 0 0 0 chr3 114083765 114083791 -103953367 + AT_rich Low_complexity Low_complexity 1 26 0 320 167 11 89 chr3 114083813 114083903 -103953255 + L1MC4 LINE L1 7950 8032 -10 330 232 0 0 chr3 114083992 114084061 -103953097 - L2 LINE L2 0 3313 3245 739 189 8 0 chr3 114084078 114084200 -103952958 + FLAM_A SINE Alu 4 126 -7 1227 142 88 176 chr3 114084522 114084676 -103952482 + MLT1A2 LTR MaLR 1 167 -207 2284 105 0 3 chr3 114084676 114084982 -103952176 + AluSx SINE Alu 1 305 -7 1227 142 88 176 chr3 114084982 114085159 -103951999 + MLT1A2 LTR MaLR 167 292 -82 2254 110 0 0 chr3 114085159 114085449 -103951709 + AluSx SINE Alu 1 290 -22 1227 142 88 176 chr3 114085449 114085526 -103951632 + MLT1A2 LTR MaLR 292 374 0 329 312 60 35 chr3 114085712 114085911 -103951247 - MIR SINE MIR 0 262 59 375 291 177 0 chr3 114085933 114086074 -103951084 - MER5A DNA MER1_type -14 175 10 1546 203 103 19 chr3 114086814 114087241 -103949917 - L1ME1 LINE L1 -37 6129 5660 2498 247 69 55 chr3 114087267 114087321 -103949837 - L1MEc LINE L1 -5428 968 916 2075 117 13 23 chr3 114087321 114087629 -103949529 - AluSq SINE Alu -8 305 1 2498 247 69 55 chr3 114087629 114087686 -103949472 - L1MEc LINE L1 -5480 916 861 183 42 0 0 chr3 114087686 114087710 -103949448 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2498 247 69 55 chr3 114087710 114087874 -103949284 - L1MEc LINE L1 -5535 861 701 1946 144 17 0 chr3 114087874 114088166 -103948992 + AluSx SINE Alu 1 297 -15 2498 247 69 55 chr3 114088166 114088178 -103948980 - L1MEc LINE L1 -5695 701 691 2453 67 0 3 chr3 114088178 114088475 -103948683 + AluY SINE Alu 1 296 -15 2498 247 69 55 chr3 114088475 114089096 -103948062 - L1MEc LINE L1 -5705 691 44 399 293 36 21 chr3 114089132 114089272 -103947886 + LTR50 LTR ERVL 465 606 -189 1194 108 30 0 chr3 114089275 114089442 -103947716 + MLT1B LTR MaLR 2 173 -217 308 64 21 0 chr3 114089489 114089536 -103947622 + (CA)n Simple_repeat Simple_repeat 1 48 0 1553 168 39 11 chr3 114090098 114090115 -103947043 - AluJo SINE Alu 0 409 394 181 57 57 0 chr3 114090115 114090150 -103947008 + (TA)n Simple_repeat Simple_repeat 1 37 0 1553 168 39 11 chr3 114090150 114090499 -103946659 - AluJo SINE Alu -15 394 1 352 77 0 19 chr3 114090652 114090704 -103946454 + AluJb SINE Alu 86 136 -166 2021 130 3 3 chr3 114090704 114091005 -103946153 + AluSx SINE Alu 1 301 -11 2460 112 5 36 chr3 114091011 114091281 -103945877 + L1PA7 LINE L1 2461 2718 -3428 2281 49 0 11 chr3 114091281 114091597 -103945561 + AluY SINE Alu 1 313 0 2460 112 5 36 chr3 114091597 114091718 -103945440 + L1PA7 LINE L1 2718 2841 -3305 2581 61 3 0 chr3 114092294 114092604 -103944554 + AluY SINE Alu 1 311 0 21 0 0 0 chr3 114092832 114092853 -103944305 + AT_rich Low_complexity Low_complexity 1 21 0 2206 108 3 7 chr3 114093025 114093332 -103943826 - AluSc SINE Alu -1 308 3 2430 108 0 0 chr3 114093413 114093783 -103943375 + L1PA7 LINE L1 2827 3196 -2950 2155 81 11 4 chr3 114093784 114094056 -103943102 + AluY SINE Alu 1 274 -37 16695 77 9 2 chr3 114094056 114096948 -103940210 + L1PA7 LINE L1 3253 6153 -1 2162 117 7 0 chr3 114097024 114097315 -103939843 + AluSx SINE Alu 1 293 -19 309 230 0 0 chr3 114097315 114097389 -103939769 + (TA)n Simple_repeat Simple_repeat 1 74 0 1025 144 6 24 chr3 114097409 114097420 -103939738 + AluJb SINE Alu 123 133 -179 2275 113 3 0 chr3 114097420 114097731 -103939427 + AluSx SINE Alu 1 312 0 1025 144 6 24 chr3 114097731 114097886 -103939272 + AluJb SINE Alu 133 286 -26 1769 186 7 7 chr3 114097921 114098217 -103938941 + AluSx SINE Alu 1 296 -16 1626 227 16 24 chr3 114098569 114098939 -103938219 + MLT1A2 LTR MaLR 1 367 -7 234 0 0 0 chr3 114098961 114098987 -103938171 + (CA)n Simple_repeat Simple_repeat 2 27 0 * 435 38 0 0 chr3 114098986 114099039 -103938119 + (TC)n Simple_repeat Simple_repeat 1 53 0 2284 94 3 13 chr3 114099766 114100073 -103937085 + AluSx SINE Alu 1 304 -8 893 193 7 0 chr3 114100167 114100317 -103936841 + FRAM SINE Alu 1 151 -15 2239 176 46 25 chr3 114100340 114100778 -103936380 + MLT1C LTR MaLR 21 467 0 1995 129 3 0 chr3 114100778 114101065 -103936093 + AluSp SINE Alu 1 288 -25 2176 106 7 23 chr3 114101091 114101394 -103935764 + AluSx SINE Alu 1 298 -14 231 346 9 28 chr3 114101942 114102049 -103935109 - MER5A DNA MER1_type -22 167 63 2379 81 0 10 chr3 114102133 114102440 -103934718 + AluSg SINE Alu 1 304 -6 369 0 0 0 chr3 114102449 114102490 -103934668 + (CA)n Simple_repeat Simple_repeat 2 42 0 421 292 38 4 chr3 114102490 114102751 -103934407 + L1ME3 LINE L1 5691 6161 -1 315 0 0 0 chr3 114102778 114102813 -103934345 + (TG)n Simple_repeat Simple_repeat 1 35 0 1397 181 0 4 chr3 114103418 114103655 -103933503 - AluJb SINE Alu -22 290 55 23 0 0 0 chr3 114103722 114103745 -103933413 + AT_rich Low_complexity Low_complexity 1 23 0 1711 162 33 33 chr3 114103753 114104055 -103933103 + AluJb SINE Alu 1 302 -10 2119 103 3 0 chr3 114104363 114104655 -103932503 - AluSx SINE Alu -19 293 1 835 97 0 0 chr3 114105567 114105680 -103931478 + AluSq/x SINE Alu 1 113 -199 2372 96 0 0 chr3 114105681 114105984 -103931174 + AluSx SINE Alu 5 307 -5 2219 84 3 3 chr3 114106312 114106641 -103930517 - AluSq SINE Alu 0 329 1 2141 104 13 3 chr3 114106911 114107209 -103929949 + AluSp SINE Alu 1 301 -12 308 275 0 33 chr3 114107302 114107393 -103929765 + MIR SINE MIR 74 161 -101 585 304 43 5 chr3 114107448 114107632 -103929526 - MIR SINE MIR -71 191 1 2045 137 7 0 chr3 114107728 114108020 -103929138 + AluSx SINE Alu 1 294 -18 4482 21 17 0 chr3 114108033 114108515 -103928643 - LTR2B LTR ERV1 0 490 1 207 0 0 0 chr3 114108543 114108566 -103928592 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2586 47 0 3 chr3 114108641 114108942 -103928216 + AluY SINE Alu 1 300 -11 2405 93 0 0 chr3 114108960 114109261 -103927897 + AluSx SINE Alu 1 301 -11 204 209 0 0 chr3 114109373 114109416 -103927742 + L2 LINE L2 2926 2968 -304 690 140 0 0 chr3 114109416 114109530 -103927628 + (CA)n Simple_repeat Simple_repeat 2 115 0 184 400 27 13 chr3 114109962 114110037 -103927121 - L2 LINE L2 -82 3190 3115 1964 150 0 7 chr3 114110359 114110659 -103926499 - AluSx SINE Alu -14 298 1 2246 86 0 0 chr3 114110783 114111061 -103926097 - AluSc SINE Alu -31 278 1 986 221 38 8 chr3 114111084 114111347 -103925811 + L2 LINE L2 1772 2042 -1272 1908 162 0 7 chr3 114111349 114111658 -103925500 - AluJb SINE Alu -2 310 4 321 121 69 0 chr3 114111662 114111720 -103925438 + L2 LINE L2 2156 2217 -1097 866 236 156 112 chr3 114111720 114112075 -103925083 - HsTC2a DNA Tc2 -1338 562 177 2109 90 0 11 chr3 114112075 114112353 -103924805 + AluSp SINE Alu 1 275 -38 866 236 156 112 chr3 114112353 114112498 -103924660 - HsTC2a DNA Tc2 -1723 177 40 330 316 139 37 chr3 114113390 114113504 -103923654 - MIR SINE MIR -40 222 121 2242 83 10 10 chr3 114113504 114113806 -103923352 + AluSx SINE Alu 1 302 -10 330 316 139 37 chr3 114113806 114113878 -103923280 - MIR SINE MIR -141 121 17 2203 90 14 0 chr3 114114891 114115169 -103921989 - AluSq SINE Alu -17 296 15 1886 147 10 10 chr3 114115385 114115684 -103921474 + AluJb SINE Alu 5 303 -9 1574 166 10 52 chr3 114116213 114116502 -103920656 + AluJb SINE Alu 2 278 -34 306 0 0 0 chr3 114116502 114116536 -103920622 + (TC)n Simple_repeat Simple_repeat 1 34 0 270 0 0 0 chr3 114116535 114116565 -103920593 + (CA)n Simple_repeat Simple_repeat 1 30 0 * 2505 48 0 3 chr3 114116774 114117066 -103920092 + AluY SINE Alu 1 291 -20 2446 87 3 0 chr3 114117146 114117446 -103919712 + AluSp SINE Alu 1 301 -12 25 0 0 0 chr3 114117735 114117760 -103919398 + AT_rich Low_complexity Low_complexity 1 25 0 2477 80 0 6 chr3 114117917 114118230 -103918928 + AluY SINE Alu 1 311 0 1080 99 7 0 chr3 114118440 114118582 -103918576 - AluSg/x SINE Alu -30 280 138 2016 200 16 31 chr3 114118997 114119422 -103917736 - MER89 LTR ERV1 0 559 141 535 222 52 30 chr3 114119899 114120034 -103917124 - MER89 LTR ERV1 -419 140 3 1579 149 21 100 chr3 114120723 114120852 -103916306 + AluYb8 SINE Alu 1 139 -179 2097 149 0 7 chr3 114120852 114121161 -103915997 + AluSq SINE Alu 1 307 -6 1579 149 21 100 chr3 114121161 114121360 -103915798 + AluYb8 SINE Alu 139 303 -15 30 45 0 0 chr3 114121463 114121507 -103915651 + AT_rich Low_complexity Low_complexity 1 44 0 512 264 76 52 chr3 114122214 114122543 -103914615 + L2 LINE L2 2968 3304 -9 869 112 0 0 chr3 114122972 114123088 -103914070 - AluSc SINE Alu -11 298 183 2549 54 0 3 chr3 114123177 114123474 -103913684 - AluY SINE Alu -15 296 1 2108 113 14 10 chr3 114123579 114123871 -103913287 + AluSx SINE Alu 1 293 -19 27 29 0 0 chr3 114123887 114123921 -103913237 + AT_rich Low_complexity Low_complexity 1 34 0 2069 109 3 11 chr3 114123923 114124259 -103912899 + AluSg SINE Alu 1 334 0 2149 127 0 0 chr3 114124594 114124894 -103912264 - AluSx SINE Alu -12 300 1 1565 224 19 12 chr3 114124894 114125216 -103911942 - MLT1A1 LTR MaLR -37 328 5 258 189 53 106 chr3 114125226 114125358 -103911800 - L1ME3A LINE L1 -5 6165 6041 2418 75 13 0 chr3 114125360 114125665 -103911493 + AluY SINE Alu 1 309 -2 258 187 53 40 chr3 114126135 114126144 -103911014 + (CATATA)n Simple_repeat Simple_repeat 3 10 -68 180 0 0 0 chr3 114126144 114126164 -103910994 + (TG)n Simple_repeat Simple_repeat 2 21 0 258 187 53 40 chr3 114126164 114126229 -103910929 + (CATATA)n Simple_repeat Simple_repeat 10 78 0 411 250 13 86 chr3 114126279 114126511 -103910647 + MER46C DNA MER2_type 59 273 -65 2129 109 3 7 chr3 114126577 114126860 -103910298 + AluSq SINE Alu 1 282 -31 1769 109 0 0 chr3 114126960 114127190 -103909968 - AluSx SINE Alu -26 286 57 870 104 17 0 chr3 114127191 114127306 -103909852 - AluSq/x SINE Alu -195 117 1 268 333 11 0 chr3 114127315 114127408 -103909750 - MIR SINE MIR -121 141 48 1813 128 4 7 chr3 114127751 114128024 -103909134 - AluSx SINE Alu -1 311 40 1952 87 87 0 chr3 114128080 114128355 -103908803 - AluSg SINE Alu -11 299 1 2478 72 0 0 chr3 114128365 114128669 -103908489 - AluY SINE Alu -7 304 1 2135 123 0 3 chr3 114129014 114129316 -103907842 - AluSc SINE Alu -8 301 1 1062 209 30 109 chr3 114129327 114129487 -103907671 - L1MC4 LINE L1 -1 8041 7870 1543 203 28 7 chr3 114129487 114129773 -103907385 - AluJo SINE Alu -18 294 3 1062 209 30 109 chr3 114129773 114130005 -103907153 - L1MC4 LINE L1 -172 7870 7680 864 150 8 0 chr3 114130013 114130146 -103907012 + AluJo SINE Alu 1 134 -178 756 205 37 42 chr3 114130208 114130398 -103906760 - L1MC4 LINE L1 -368 7674 7486 230 234 0 0 chr3 114130803 114130850 -103906308 - L1MC4 LINE L1 -551 7491 7445 1511 118 30 113 chr3 114131367 114131696 -103905462 - AluYb8 SINE Alu -16 302 1 3366 115 29 2 chr3 114131734 114132220 -103904938 - Tigger3b DNA MER2_type 0 1231 733 986 145 0 0 chr3 114132223 114132368 -103904790 - AluSg/x SINE Alu -8 302 158 3609 108 82 6 chr3 114132368 114132989 -103904169 - Tigger3b DNA MER2_type -498 733 66 237 65 0 0 chr3 114132994 114133025 -103904133 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 2111 110 3 3 chr3 114133025 114133311 -103903847 - AluSx SINE Alu -26 286 1 1830 172 10 7 chr3 114133541 114133843 -103903315 + AluJb SINE Alu 1 303 -9 2117 106 35 32 chr3 114133851 114134163 -103902995 + AluSq SINE Alu 1 313 0 570 177 113 0 chr3 114134186 114134312 -103902846 + MLT2C1 LTR ERVL 250 396 -1 2196 94 35 0 chr3 114134341 114134628 -103902530 - AluSp SINE Alu -16 297 1 2380 97 3 0 chr3 114134631 114134939 -103902219 - AluSg SINE Alu -1 309 1 224 298 58 10 chr3 114134973 114135077 -103902081 - L2 LINE L2 -31 3282 3174 741 157 32 105 chr3 114135078 114135236 -103901922 - LTR49 LTR ERV1 0 595 460 1982 112 4 11 chr3 114135236 114135512 -103901646 + AluSp SINE Alu 1 274 -39 741 157 32 105 chr3 114135512 114135601 -103901557 - LTR49 LTR ERV1 -135 460 366 411 130 30 40 chr3 114135619 114135719 -103901439 - LTR49 LTR ERV1 -496 99 1 519 279 113 31 chr3 114135721 114136047 -103901111 - L2 LINE L2 -132 3181 2829 425 217 175 28 chr3 114136244 114136387 -103900771 + MER5A DNA MER1_type 18 181 -8 411 200 30 89 chr3 114136391 114136526 -103900632 - MER5B DNA MER1_type -8 170 44 2388 50 40 10 chr3 114137365 114137666 -103899492 - AluY SINE Alu -1 310 1 2436 68 10 0 chr3 114138053 114138348 -103898810 - AluSq SINE Alu -15 298 1 390 300 8 0 chr3 114138732 114138852 -103898306 + L2 LINE L2 2921 3041 -272 225 180 0 0 chr3 114138852 114138902 -103898256 + AluSp SINE Alu 253 302 0 1649 162 21 10 chr3 114140286 114140576 -103896582 + AluJb SINE Alu 1 293 -19 1899 102 4 0 chr3 114140727 114140972 -103896186 + AluSg SINE Alu 1 246 -64 591 128 0 0 chr3 114141347 114141441 -103895717 - L1P LINE L1 -3774 2372 2279 2328 71 0 3 chr3 114141832 114142128 -103895030 + AluY SINE Alu 11 305 -6 2327 83 10 10 chr3 114142140 114142453 -103894705 + AluSq SINE Alu 1 313 0 1224 102 0 12 chr3 114142453 114142620 -103894538 + AluSg/x SINE Alu 134 298 -14 615 172 30 37 chr3 114143274 114143408 -103893750 + FLAM_A SINE Alu 1 133 0 1829 149 54 0 chr3 114143475 114143771 -103893387 - AluJb SINE Alu 0 312 1 325 255 78 46 chr3 114143839 114143992 -103893166 - MIR SINE MIR -87 175 18 2054 136 10 7 chr3 114144035 114144343 -103892815 - AluSx SINE Alu -3 309 1 673 121 0 78 chr3 114145025 114145166 -103891992 + FLAM_C SINE Alu 2 131 -12 2400 56 3 13 chr3 114146053 114146355 -103890803 + AluSp SINE Alu 1 299 -14 622 208 39 26 chr3 114146368 114146522 -103890636 - AluJb SINE Alu -20 292 137 32 0 0 23 chr3 114147075 114147092 -103890066 + AT_rich Low_complexity Low_complexity 1 17 -25 1862 138 17 0 chr3 114147092 114147381 -103889777 - AluSx SINE Alu -18 294 1 32 0 0 23 chr3 114147381 114147406 -103889752 + AT_rich Low_complexity Low_complexity 17 42 0 2062 108 7 7 chr3 114147522 114147818 -103889340 + AluSx SINE Alu 1 296 -16 1211 195 107 4 chr3 114147830 114148092 -103889066 + AluJo SINE Alu 5 293 -19 1310 157 82 30 chr3 114148707 114148974 -103888184 - AluJb SINE Alu -18 294 14 2037 138 3 28 chr3 114149872 114150190 -103886968 - AluSx SINE Alu -2 310 1 1689 107 30 0 chr3 114150204 114150438 -103886720 - AluSx SINE Alu -71 241 1 869 258 77 22 chr3 114150600 114151003 -103886155 + HAL1 LINE L1 2057 2481 -26 2079 169 39 39 chr3 114151973 114152451 -103884707 + MLT2A2 LTR ERVL 1 479 -75 1671 85 0 14 chr3 114152451 114152662 -103884496 - AluSg/x SINE Alu -22 288 81 2079 169 39 39 chr3 114152662 114152739 -103884419 + MLT2A2 LTR ERVL 479 554 0 618 243 7 0 chr3 114152994 114153142 -103884016 + MIR SINE MIR 40 188 -74 2288 119 0 0 chr3 114153479 114153781 -103883377 + AluSx SINE Alu 6 307 -5 359 291 48 18 chr3 114153845 114154010 -103883148 - MLT1L LTR MaLR -18 597 428 2352 110 126 5 chr3 114154473 114154855 -103882303 - MSTA LTR MaLR 0 428 1 203 211 122 44 chr3 114155030 114155120 -103882038 + L2 LINE L2 2404 2500 -814 1427 221 7 10 chr3 114155145 114155443 -103881715 - AluJo SINE Alu -15 297 1 2440 92 0 0 chr3 114155472 114155778 -103881380 + AluY SINE Alu 1 306 -5 2427 84 0 3 chr3 114156214 114156511 -103880647 + AluSq SINE Alu 1 296 -17 282 333 30 7 chr3 114157333 114157468 -103879690 - MIR SINE MIR -124 138 1 3893 178 33 61 chr3 114158333 114158884 -103878274 - L1MB7 LINE L1 -34 6150 5637 2408 85 3 0 chr3 114158884 114159178 -103877980 - AluSg SINE Alu -15 295 1 3893 178 33 61 chr3 114159178 114159590 -103877568 - L1MB7 LINE L1 -547 5637 5215 831 242 118 104 chr3 114159601 114159798 -103877360 - L1MC4 LINE L1 -1 8041 7848 2142 107 7 24 chr3 114159798 114160096 -103877062 - AluSg SINE Alu -17 293 1 831 242 118 104 chr3 114160096 114160107 -103877051 - L1MC4 LINE L1 -194 7848 7839 2285 101 6 22 chr3 114160107 114160423 -103876735 - AluSp SINE Alu -2 311 1 831 242 118 104 chr3 114160423 114160823 -103876335 - L1MC4 LINE L1 -203 7839 7446 2622 78 8 22 chr3 114160823 114161140 -103876018 + THE1A LTR MaLR 1 314 -41 2288 126 0 0 chr3 114161140 114161442 -103875716 - AluSx SINE Alu -10 302 1 2622 78 8 22 chr3 114161442 114161484 -103875674 + THE1A LTR MaLR 314 355 0 11613 92 18 7 chr3 114161484 114163047 -103874111 + THE1A-int LTR MaLR 1 1580 0 2583 95 3 11 chr3 114163047 114163405 -103873753 + THE1A LTR MaLR 1 355 0 831 242 118 104 chr3 114163405 114163648 -103873510 - L1MC4 LINE L1 -596 7446 7169 2060 126 31 0 chr3 114163648 114163941 -103873217 - AluSx SINE Alu -8 304 3 831 242 118 104 chr3 114163941 114164015 -103873143 - L1MC4 LINE L1 -873 7169 7098 2210 102 3 16 chr3 114164037 114164341 -103872817 + AluSg SINE Alu 1 300 -10 2103 129 0 0 chr3 114164343 114164645 -103872513 + AluSg SINE Alu 1 302 -8 1411 181 28 0 chr3 114164955 114165209 -103871949 + AluJo SINE Alu 7 267 -45 795 173 47 0 chr3 114165331 114165458 -103871700 + FLAM_A SINE Alu 1 133 0 1553 111 5 5 chr3 114165620 114165837 -103871321 - AluSx SINE Alu -95 217 1 23 33 0 0 chr3 114165898 114165928 -103871230 + AT_rich Low_complexity Low_complexity 1 30 0 1044 171 4 95 chr3 114166014 114166266 -103870892 - AluJo SINE Alu -83 229 1 300 313 10 0 chr3 114166276 114166375 -103870783 + L1MC5 LINE L1 7733 7832 -129 1036 79 0 21 chr3 114166481 114166621 -103870537 - AluSg/x SINE Alu -11 301 165 2444 82 3 0 chr3 114166745 114167050 -103870108 - AluSq SINE Alu -6 307 2 23 0 0 0 chr3 114167150 114167173 -103869985 + AT_rich Low_complexity Low_complexity 1 23 0 948 194 0 0 chr3 114167194 114167364 -103869794 - FRAM SINE Alu -9 167 1 2222 67 0 73 chr3 114167388 114167715 -103869443 - AluY SINE Alu -8 303 1 332 347 29 32 chr3 114167755 114167795 -103869363 + L1PB3 LINE L1 5483 5522 -632 2421 95 3 0 chr3 114167795 114168100 -103869058 - AluSp SINE Alu -7 306 1 332 347 29 32 chr3 114168100 114168468 -103868690 + L1PB3 LINE L1 5522 5890 -264 * 1317 243 70 21 chr3 114168103 114168531 -103868627 + L1MD3 LINE L1 5526 5974 -2021 2138 115 0 0 chr3 114168531 114168664 -103868494 + AluSg SINE Alu 1 133 -177 2085 124 10 0 chr3 114168664 114168955 -103868203 + AluSg SINE Alu 1 294 -16 2138 115 0 0 chr3 114168955 114169116 -103868042 + AluSg SINE Alu 132 295 -15 1468 110 0 34 chr3 114169116 114169325 -103867833 + AluY SINE Alu 1 202 -109 314 198 30 133 chr3 114169632 114169715 -103867443 - L1ME1 LINE L1 0 6166 6076 2151 64 8 4 chr3 114169715 114169982 -103867176 + AluSp SINE Alu 1 268 -45 314 198 30 133 chr3 114169982 114169994 -103867164 - L1ME1 LINE L1 -90 6076 6064 207 0 0 0 chr3 114169994 114170017 -103867141 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 314 198 30 133 chr3 114170017 114170177 -103866981 - L1ME1 LINE L1 -102 6064 5928 466 211 154 0 chr3 114170177 114170300 -103866858 - MER5A DNA MER1_type -47 142 1 413 55 18 0 chr3 114170318 114170373 -103866785 - AluSp/q SINE Alu -19 294 239 10099 97 14 9 chr3 114170499 114171146 -103866012 - L1PA8A LINE L1 -366 5765 5123 2466 67 3 0 chr3 114171146 114171444 -103865714 - AluY SINE Alu -12 299 1 10099 97 14 9 chr3 114171444 114172628 -103864530 - L1PA8A LINE L1 -1008 5123 3932 2363 57 7 3 chr3 114172628 114172924 -103864234 - AluY SINE Alu -14 297 1 2224 98 0 0 chr3 114173001 114173288 -103863870 - AluSp SINE Alu -26 287 1 348 273 19 65 chr3 114173288 114173371 -103863787 + L1ME LINE L1 5511 5585 -536 1513 191 11 11 chr3 114173371 114173644 -103863514 - AluJo SINE Alu -39 273 1 348 273 19 65 chr3 114173644 114173714 -103863444 + L1ME LINE L1 5585 5657 -464 2367 56 3 13 chr3 114173721 114174023 -103863135 + AluSp SINE Alu 1 299 -14 673 208 39 26 chr3 114174036 114174190 -103862968 - AluJb SINE Alu -20 292 137 31 0 0 24 chr3 114174743 114174760 -103862398 + AT_rich Low_complexity Low_complexity 1 17 -24 1880 138 14 0 chr3 114174760 114175050 -103862108 - AluSx SINE Alu -18 294 1 31 0 0 24 chr3 114175050 114175074 -103862084 + AT_rich Low_complexity Low_complexity 17 41 0 1983 110 4 4 chr3 114175751 114176015 -103861143 + AluSq SINE Alu 1 264 -49 207 0 0 0 chr3 114176030 114176053 -103861105 + (TC)n Simple_repeat Simple_repeat 2 24 0 208 369 58 76 chr3 114176240 114176465 -103860693 + L2 LINE L2 3017 3237 -35 2131 125 10 0 chr3 114177634 114177937 -103859221 + AluSq SINE Alu 1 306 -7 542 108 0 14 chr3 114178131 114178205 -103858953 + AluS SINE Alu 2 74 -238 1663 187 13 7 chr3 114178508 114178818 -103858340 - AluJo SINE Alu 0 312 1 629 286 255 47 chr3 114178829 114179137 -103858021 + Charlie7 DNA MER1_type 9 252 -2360 2040 142 30 0 chr3 114179137 114179439 -103857719 + AluSx SINE Alu 1 311 -1 629 286 255 47 chr3 114179439 114179501 -103857657 + Charlie7 DNA MER1_type 252 300 -2312 1777 156 49 0 chr3 114179501 114179789 -103857369 - AluJb SINE Alu -10 302 1 629 286 255 47 chr3 114179789 114179927 -103857231 + Charlie7 DNA MER1_type 300 624 -1988 27 73 0 0 chr3 114179942 114179997 -103857161 + AT_rich Low_complexity Low_complexity 1 55 0 36060 35 30 2 chr3 114180305 114184650 -103852508 - L1P LINE L1 -1676 4470 1 238 242 146 73 chr3 114186162 114186381 -103850777 - L1ME4a LINE L1 -5 6116 5882 684 224 16 47 chr3 114186394 114186586 -103850572 - L1MC4 LINE L1 -10 8032 7847 26 30 0 0 chr3 114186587 114186620 -103850538 + AT_rich Low_complexity Low_complexity 1 33 0 826 169 0 0 chr3 114186620 114186744 -103850414 - FLAM_C SINE Alu -19 124 1 4956 50 7 0 chr3 114186787 114187365 -103849793 + L1PA7 LINE L1 5558 6139 -15 261 75 57 0 chr3 114187365 114187418 -103849740 + (TA)n Simple_repeat Simple_repeat 1 56 0 211 169 0 34 chr3 114187919 114187978 -103849180 + GA-rich Low_complexity Low_complexity 2 58 0 369 282 166 25 chr3 114189059 114189300 -103847858 + L2 LINE L2 2823 3097 -216 263 111 0 22 chr3 114189300 114189345 -103847813 + LTR54 LTR ERV1 399 442 -68 235 348 71 29 chr3 114189382 114189592 -103847566 + L2 LINE L2 3095 3313 0 398 126 77 7 chr3 114190326 114190576 -103846582 + (TA)n Simple_repeat Simple_repeat 1 232 -275 1597 23 0 0 chr3 114190576 114190750 -103846408 - L1PA4 LINE L1 -4 6151 5978 398 126 77 7 chr3 114190750 114190800 -103846358 + (TA)n Simple_repeat Simple_repeat 232 507 0 314 242 58 83 chr3 114190849 114190969 -103846189 - MIR3 SINE MIR -82 126 10 683 227 26 122 chr3 114191060 114191403 -103845755 - MER51C LTR ERV1 -27 613 304 2257 117 3 0 chr3 114191832 114192141 -103845017 - AluSx SINE Alu -2 310 1 2277 92 7 0 chr3 114192179 114192515 -103844643 - AluSp SINE Alu 0 313 1 944 248 49 80 chr3 114192553 114192880 -103844278 - MLT1J LTR MaLR -53 458 142 245 128 21 0 chr3 114193066 114193113 -103844045 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 273 98 0 0 chr3 114193140 114193181 -103843977 + (CA)n Simple_repeat Simple_repeat 2 42 0 218 189 113 0 chr3 114193259 114193312 -103843846 + L2 LINE L2 3214 3272 0 2174 92 0 0 chr3 114193333 114193669 -103843489 + AluSg SINE Alu 1 336 0 2057 99 15 22 chr3 114193761 114194103 -103843055 - MER4A LTR ERV1 0 664 261 719 80 0 20 chr3 114194103 114194203 -103842955 - MER4A LTR ERV1 -566 98 1 366 290 43 36 chr3 114194277 114194415 -103842743 + MER91A DNA MER1_type 53 191 -5 2224 125 3 0 chr3 114194660 114194964 -103842194 + AluSx SINE Alu 1 305 -7 434 267 164 44 chr3 114196021 114196478 -103840680 - L1ME4a LINE L1 -80 6041 5530 346 175 0 41 chr3 114196480 114196577 -103840581 + CT-rich Low_complexity Low_complexity 3 95 0 265 289 220 13 chr3 114197520 114197679 -103839479 + L2 LINE L2 2240 2431 -883 369 295 86 100 chr3 114197733 114197886 -103839272 + L2 LINE L2 2628 2782 -490 1970 171 31 34 chr3 114197886 114198301 -103838857 - L1MB4 LINE L1 -2 6178 5765 369 295 86 100 chr3 114198301 114198326 -103838832 + L2 LINE L2 2782 2806 -466 2385 105 0 0 chr3 114198326 114198630 -103838528 - AluSq SINE Alu -9 304 1 369 295 86 100 chr3 114198630 114198896 -103838262 + L2 LINE L2 2806 3059 -213 948 244 6 0 chr3 114199050 114199218 -103837940 - FAM SINE Alu -6 169 1 1584 234 143 26 chr3 114199557 114200061 -103837097 + L1ME1 LINE L1 5583 6145 -21 221 0 35 0 chr3 114200065 114200094 -103837064 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 580 292 153 19 chr3 114200107 114200316 -103836842 + MIR SINE MIR 26 262 0 186 71 0 0 chr3 114201042 114201070 -103836088 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1381 260 100 43 chr3 114201092 114201211 -103835947 - L2 LINE L2 -1 3312 3201 2276 121 0 0 chr3 114201211 114201518 -103835640 + AluSx SINE Alu 1 307 -5 1381 260 100 43 chr3 114201518 114201961 -103835197 - L2 LINE L2 -112 3201 2679 2008 131 24 0 chr3 114201961 114202258 -103834900 - AluSq SINE Alu -9 304 1 1381 260 100 43 chr3 114202258 114202500 -103834658 - L2 LINE L2 -634 2679 2452 1221 102 0 38 chr3 114202515 114202701 -103834457 - L1MC/D LINE L1 -770 5589 5411 697 135 135 0 chr3 114202750 114202876 -103834282 + L1MB7 LINE L1 6026 6168 -16 4073 269 76 40 chr3 114202878 114203693 -103833465 - L2 LINE L2 -845 2469 1685 2510 57 0 28 chr3 114203693 114204011 -103833147 - AluY SINE Alu -2 309 1 4073 269 76 40 chr3 114204011 114204730 -103832428 - L2 LINE L2 -1629 1685 879 183 80 0 0 chr3 114205357 114205382 -103831776 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 183 332 93 53 chr3 114205535 114205761 -103831397 + L2 LINE L2 2873 3107 -165 191 303 15 15 chr3 114206511 114206577 -103830581 + L2 LINE L2 3207 3272 0 308 355 37 42 chr3 114206586 114206775 -103830383 - MIR3 SINE MIR -2 206 19 633 193 99 47 chr3 114207567 114207703 -103829455 + MER58C DNA MER1_type 26 174 -2246 2882 72 119 5 chr3 114207703 114208105 -103829053 + LTR7 LTR ERV1 1 448 -2 633 193 99 47 chr3 114208105 114208139 -103829019 + MER58C DNA MER1_type 174 205 -10 1474 46 0 0 chr3 114208139 114208312 -103828846 - L1PA4 LINE L1 -206 5949 5777 1689 53 10 5 chr3 114208312 114208506 -103828652 + L1PA4 LINE L1 5949 6155 0 4942 91 9 3 chr3 114210141 114210781 -103826377 - L1PA11 LINE L1 -7 6167 5524 554 319 64 20 chr3 114211956 114212251 -103824907 + HAL1 LINE L1 140 447 -2060 2466 91 0 0 chr3 114212253 114212562 -103824596 + AluSc SINE Alu 1 309 0 484 283 113 67 chr3 114212643 114212926 -103824232 + HAL1 LINE L1 557 852 -1655 267 250 0 0 chr3 114213365 114213429 -103823729 + (TG)n Simple_repeat Simple_repeat 1 64 0 2640 184 22 38 chr3 114213960 114214510 -103822648 + MER74A LTR ERVL 4 544 -14 280 294 11 11 chr3 114214883 114214975 -103822183 + L3 LINE CR1 1404 1495 -82 322 174 395 9 chr3 114214988 114215097 -103822061 - MER5A DNA MER1_type -30 159 9 928 156 0 15 chr3 114215406 114215541 -103821617 + FLAM_C SINE Alu 1 133 0 2296 125 0 0 chr3 114215744 114216056 -103821102 - AluSx SINE Alu 0 312 1 329 231 2 66 chr3 114216510 114216618 -103820540 - MIR3 SINE MIR -5 203 102 616 150 16 0 chr3 114216621 114216748 -103820410 + CT-rich Low_complexity Low_complexity 3 131 0 332 131 0 16 chr3 114217656 114217717 -103819441 + (TCCC)n Simple_repeat Simple_repeat 4 63 0 1884 156 30 14 chr3 114217726 114218021 -103819137 - AluJb SINE Alu -12 300 1 645 269 56 30 chr3 114218517 114218714 -103818444 - MER63A DNA MER1_type -4 206 5 919 186 0 0 chr3 114219440 114219585 -103817573 - FRAM SINE Alu -32 144 1 1491 194 70 26 chr3 114219591 114219645 -103817513 - Charlie1b DNA MER1_type -2312 449 399 1997 133 28 0 chr3 114219645 114219930 -103817228 - AluSx SINE Alu -19 293 1 1491 194 70 26 chr3 114219930 114220292 -103816866 - Charlie1b DNA MER1_type -2362 399 15 282 29 0 0 chr3 114220292 114220327 -103816831 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 180 179 0 0 chr3 114220396 114220435 -103816723 + A-rich Low_complexity Low_complexity 1 39 0 27 29 0 0 chr3 114220456 114220490 -103816668 + AT_rich Low_complexity Low_complexity 1 34 0 7794 19 0 2 chr3 114220490 114221780 -103815378 - L1PA3 LINE L1 -3 6152 4864 487 266 11 54 chr3 114221863 114222047 -103815111 - MIR SINE MIR -56 206 31 1801 156 17 0 chr3 114222093 114222381 -103814777 - AluJb SINE Alu -19 293 1 827 70 0 0 chr3 114222677 114222777 -103814381 + AluY SINE Alu 195 294 -17 2000 106 0 4 chr3 114223060 114223335 -103813823 - AluY SINE Alu -5 306 33 495 333 27 6 chr3 114223494 114223677 -103813481 + MIR SINE MIR 6 192 -70 437 297 16 0 chr3 114223752 114223880 -103813278 + MER94 DNA DNA 5 134 0 559 169 151 12 chr3 114223964 114224136 -103813022 - L1MC2 LINE L1 -3 6341 6146 2323 93 0 6 chr3 114224568 114224879 -103812279 + AluY SINE Alu 1 309 -2 185 0 0 39 chr3 114225511 114225537 -103811621 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 214 337 35 0 chr3 114225554 114225640 -103811518 - L2 LINE L2 -43 3270 3182 522 165 54 17 chr3 114225756 114225977 -103811181 + AluJo SINE Alu 1 306 -6 893 241 75 24 chr3 114226016 114226311 -103810847 + MLT1E2 LTR MaLR 3 312 -314 554 247 54 21 chr3 114226315 114226654 -103810504 + MER34B LTR ERV1 10 406 -159 1014 128 49 193 chr3 114226657 114226741 -103810417 + MER44D DNA MER2_type 1 96 -2391 2215 133 0 7 chr3 114226741 114227050 -103810108 + AluSx SINE Alu 1 307 -5 1014 128 49 193 chr3 114227050 114227244 -103809914 + MER44D DNA MER2_type 96 316 -2171 2075 135 143 11 chr3 114227244 114227622 -103809536 + MSTA LTR MaLR 1 428 0 1014 128 49 193 chr3 114227622 114227753 -103809405 + MER44D DNA MER2_type 316 605 0 399 169 22 11 chr3 114227805 114227894 -103809264 + MER34B LTR ERV1 470 559 -6 600 217 0 127 chr3 114227899 114228033 -103809125 + MLT1E2 LTR MaLR 313 410 -95 701 209 8 0 chr3 114228033 114228162 -103808996 + FLAM_C SINE Alu 1 130 -3 600 217 0 127 chr3 114228162 114228248 -103808910 + MLT1E2 LTR MaLR 410 505 0 339 348 53 37 chr3 114228248 114228492 -103808666 - L2 LINE L2 -236 3077 2830 1725 175 0 26 chr3 114228919 114229228 -103807930 + AluJo SINE Alu 5 305 -7 19123 20 0 0 chr3 114229562 114232718 -103804440 + L1HS LINE L1 3001 6155 0 2284 100 0 0 chr3 114232933 114233223 -103803935 + AluSg SINE Alu 1 290 -20 532 211 14 0 chr3 114233493 114233635 -103803523 - MER69 DNA AcHobo -21 2505 2362 944 255 81 20 chr3 114233661 114233959 -103803199 + MLT1G1 LTR MaLR 73 388 -207 688 244 87 41 chr3 114233997 114234239 -103802919 + MIR SINE MIR 10 262 0 1001 280 166 24 chr3 114234701 114235419 -103801739 + L2 LINE L2 1553 2372 -942 494 324 79 32 chr3 114235695 114235973 -103801185 + L2 LINE L2 2384 2674 -640 2138 100 7 0 chr3 114236001 114236280 -103800878 + AluSx SINE Alu 10 290 -22 1648 150 55 15 chr3 114236387 114236661 -103800497 + AluSx SINE Alu 1 285 -27 215 162 59 0 chr3 114236661 114236729 -103800429 + (TA)n Simple_repeat Simple_repeat 1 72 0 322 309 181 35 chr3 114236825 114237107 -103800051 + L2 LINE L2 2991 3313 0 265 225 188 0 chr3 114237316 114237396 -103799762 + MIR3 SINE MIR 93 187 -21 2278 111 0 3 chr3 114237855 114238161 -103798997 - AluSx SINE Alu -7 305 1 237 229 145 23 chr3 114239135 114239266 -103797892 + L1ME4a LINE L1 5974 6120 -1 1127 283 52 39 chr3 114240630 114241248 -103795910 - L1MC4a LINE L1 -1899 5909 5284 218 309 0 0 chr3 114241453 114241508 -103795650 + (CA)n Simple_repeat Simple_repeat 2 56 0 257 210 0 43 chr3 114241566 114241651 -103795507 - L1M4 LINE L1 -1160 4986 4905 23 33 0 0 chr3 114241797 114241827 -103795331 + AT_rich Low_complexity Low_complexity 1 30 0 348 304 146 9 chr3 114242020 114242471 -103794687 - L1M4 LINE L1 -1573 4573 4061 243 236 24 121 chr3 114242794 114242959 -103794199 - LTR16B LTR ERVL -315 149 1 263 333 44 44 chr3 114242959 114243118 -103794040 + MIR3 SINE MIR 14 172 -36 269 261 0 15 chr3 114243131 114243196 -103793962 + L2 LINE L2 3249 3312 -1 322 318 74 78 chr3 114243292 114243550 -103793608 + L2 LINE L2 2840 3096 -176 244 386 36 50 chr3 114244020 114244160 -103792998 + L2 LINE L2 3134 3271 -1 395 371 46 10 chr3 114244833 114245027 -103792131 + MIR SINE MIR 16 216 -46 1588 173 10 34 chr3 114245029 114245324 -103791834 + AluSx SINE Alu 1 288 -24 11464 122 18 19 chr3 114245423 114247328 -103789830 + L1P LINE L1 14 1915 -4231 3811 49 2 2 chr3 114247329 114247826 -103789332 + L1PA6 LINE L1 5673 6169 0 224 246 0 92 chr3 114247850 114247915 -103789243 + MIR SINE MIR 204 262 0 450 229 21 109 chr3 114247963 114248155 -103789003 - MIR SINE MIR 0 262 88 1950 157 23 3 chr3 114248487 114248787 -103788371 - AluSx SINE Alu -6 306 1 26 30 0 0 chr3 114249099 114249132 -103788026 + AT_rich Low_complexity Low_complexity 1 33 0 4735 147 37 23 chr3 114249189 114250545 -103786613 + L1PA16 LINE L1 4794 6166 0 2175 116 3 0 chr3 114250628 114250929 -103786229 + AluSq SINE Alu 1 302 -11 539 117 29 58 chr3 114250997 114251033 -103786125 + U6 snRNA snRNA 2 38 -69 5292 158 92 12 chr3 114251033 114251977 -103785181 - LTR28 LTR ERV1 0 1020 1 539 117 29 58 chr3 114251977 114252043 -103785115 + U6 snRNA snRNA 38 101 -6 507 59 0 0 chr3 114252109 114252177 -103784981 - L1MA5A LINE L1 -65 6232 6165 292 325 29 127 chr3 114253064 114253372 -103783786 - L2 LINE L2 0 3272 2995 302 306 156 19 chr3 114253375 114253535 -103783623 - MIR SINE MIR -78 184 3 2013 152 0 0 chr3 114253836 114254132 -103783026 + AluJb SINE Alu 1 296 -16 331 330 39 0 chr3 114254492 114254595 -103782563 - L2 LINE L2 -5 3308 3202 492 265 37 30 chr3 114254682 114254943 -103782215 + L1MC4a LINE L1 5523 5783 -2025 719 208 16 0 chr3 114255205 114255330 -103781828 - FLAM_A SINE Alu -6 127 1 25 0 0 0 chr3 114255985 114256010 -103781148 + AT_rich Low_complexity Low_complexity 1 25 0 345 164 0 0 chr3 114257270 114257325 -103779833 + AluS SINE Alu 9 63 -238 1186 141 6 0 chr3 114257325 114257521 -103779637 + AluSg/x SINE Alu 114 310 0 3103 180 46 49 chr3 114257534 114257858 -103779300 + L1MB3 LINE L1 5049 5372 -811 2079 130 0 16 chr3 114257858 114258165 -103778993 + AluSq SINE Alu 1 302 -11 3103 180 46 49 chr3 114258165 114258357 -103778801 + L1MB3 LINE L1 5372 5563 -620 2101 212 114 70 chr3 114258357 114259148 -103778010 + LTR1B LTR ERV1 1 826 0 3103 180 46 49 chr3 114259148 114259568 -103777590 + L1MB3 LINE L1 5563 5987 -196 335 250 62 14 chr3 114259565 114259709 -103777449 + L1MC5 LINE L1 7767 7917 -44 * 268 313 105 61 chr3 114259753 114260427 -103776731 + L1MC4a LINE L1 5885 6588 -1220 2347 105 0 0 chr3 114260429 114260735 -103776423 - AluSx SINE Alu -6 306 1 2221 197 30 10 chr3 114260919 114261416 -103775742 + L1P3 LINE L1 2 508 -5367 21994 141 18 62 chr3 114261416 114262924 -103774234 + L1P3 LINE L1 771 2345 -4116 1226 112 6 0 chr3 114262924 114263085 -103774073 + AluSp SINE Alu 135 296 -17 21994 141 18 62 chr3 114263085 114265081 -103772077 + L1P3 LINE L1 2345 4192 -2269 2011 102 23 56 chr3 114265081 114265386 -103771772 + AluSg1 SINE Alu 1 295 -14 21994 141 18 62 chr3 114265386 114266570 -103770588 + L1P3 LINE L1 4192 5427 -1034 2599 58 3 0 chr3 114266570 114266880 -103770278 + AluY SINE Alu 1 311 0 185 0 0 39 chr3 114267528 114267554 -103769604 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 196 310 42 0 chr3 114267571 114267642 -103769516 - L2 LINE L2 -43 3270 3197 515 170 54 17 chr3 114267773 114267994 -103769164 + AluJo SINE Alu 1 306 -6 1017 241 75 24 chr3 114268033 114268328 -103768830 + MLT1E2 LTR MaLR 3 312 -314 624 243 50 26 chr3 114268332 114268671 -103768487 + MER34B LTR ERV1 10 406 -159 1116 127 38 196 chr3 114268674 114268758 -103768400 + MER44D DNA MER2_type 1 97 -2390 2180 134 0 7 chr3 114268758 114269063 -103768095 + AluSx SINE Alu 1 303 -9 1116 127 38 196 chr3 114269063 114269256 -103767902 + MER44D DNA MER2_type 97 319 -2168 2124 135 143 11 chr3 114269256 114269634 -103767524 + MSTA LTR MaLR 1 428 0 1116 127 38 196 chr3 114269634 114269765 -103767393 + MER44D DNA MER2_type 319 605 0 447 157 22 11 chr3 114269817 114269906 -103767252 + MER34B LTR ERV1 470 559 -6 671 217 0 127 chr3 114269911 114270045 -103767113 + MLT1E2 LTR MaLR 313 410 -95 700 209 8 0 chr3 114270045 114270174 -103766984 + FLAM_C SINE Alu 1 130 -3 671 217 0 127 chr3 114270174 114270260 -103766898 + MLT1E2 LTR MaLR 410 505 0 249 332 62 44 chr3 114270278 114270504 -103766654 - L2 LINE L2 -254 3059 2830 1712 175 0 26 chr3 114270931 114271240 -103765918 + AluJo SINE Alu 5 305 -7 182 259 0 56 chr3 114271348 114271402 -103765756 - MIR SINE MIR -209 53 3 31 26 0 0 chr3 114271729 114271767 -103765391 + AT_rich Low_complexity Low_complexity 1 38 0 1451 175 71 62 chr3 114272458 114272795 -103764363 + MER2 DNA MER2_type 6 345 0 986 83 0 0 chr3 114272819 114272940 -103764218 - AluY SINE Alu -18 293 173 286 338 76 58 chr3 114273061 114273336 -103763822 + L2 LINE L2 2993 3272 0 395 248 184 28 chr3 114273507 114273697 -103763461 - MIR SINE MIR 0 262 32 1869 146 3 14 chr3 114273697 114273985 -103763173 - AluSx SINE Alu -27 285 1 395 248 184 28 chr3 114273985 114274012 -103763146 - MIR SINE MIR -230 32 11 198 302 87 8 chr3 114274052 114274178 -103762980 + MIR SINE MIR 117 252 -10 1143 254 26 7 chr3 114274694 114275001 -103762157 + MLT2D LTR ERVL 54 366 -48 2326 167 52 15 chr3 114275006 114275283 -103761875 + MER47B DNA MER2_type 1 299 -2024 1849 135 130 51 chr3 114275283 114275618 -103761540 - MSTA LTR MaLR -4 424 52 2467 92 3 0 chr3 114275618 114275922 -103761236 - AluSp SINE Alu -8 305 1 1849 135 130 51 chr3 114275922 114275979 -103761179 - MSTA LTR MaLR -376 52 1 2326 167 52 15 chr3 114275979 114276103 -103761055 + MER47B DNA MER2_type 299 417 -1 377 56 74 0 chr3 114276103 114276153 -103761005 + MLT2C2 LTR ERVL 411 464 0 22 0 0 0 chr3 114276164 114276186 -103760972 + AT_rich Low_complexity Low_complexity 1 22 0 492 178 59 25 chr3 114278622 114278740 -103758418 + MIR SINE MIR 112 233 -29 1883 209 73 18 chr3 114278743 114278939 -103758219 - L1 LINE L1 -2331 3815 3631 2591 58 0 7 chr3 114278939 114279249 -103757909 - AluY SINE Alu -1 310 3 1883 209 73 18 chr3 114279249 114279545 -103757613 - L1 LINE L1 -2515 3631 3296 1191 186 54 17 chr3 114279597 114279892 -103757266 - MER33 DNA MER1_type -5 319 14 2213 103 3 3 chr3 114279901 114280192 -103756966 - AluSg SINE Alu -17 293 3 327 164 62 37 chr3 114280247 114280355 -103756803 - MER34 LTR ERV1 -16 556 434 2287 102 0 16 chr3 114280385 114280690 -103756468 + AluSx SINE Alu 1 300 -12 1614 174 24 14 chr3 114281009 114281303 -103755855 - AluJo SINE Alu -14 298 2 2151 122 11 0 chr3 114281389 114281676 -103755482 - AluSx SINE Alu -19 293 4 360 126 0 20 chr3 114281764 114281830 -103755328 + Alu SINE Alu 1 44 -258 2226 114 13 3 chr3 114282023 114282329 -103754829 - AluSg SINE Alu -1 309 1 1598 65 0 0 chr3 114282696 114282909 -103754249 - AluSg/x SINE Alu 0 309 97 2250 114 3 0 chr3 114282920 114283226 -103753932 - AluSg SINE Alu -3 307 1 300 302 178 6 chr3 114283250 114283389 -103753769 + MIR3 SINE MIR 7 181 -27 406 247 117 19 chr3 114283389 114283551 -103753607 - MER5B DNA MER1_type 0 178 1 300 302 178 6 chr3 114283551 114283580 -103753578 + MIR3 SINE MIR 181 204 -4 490 274 62 71 chr3 114284036 114284262 -103752896 + MIR SINE MIR 13 236 -26 32 26 0 0 chr3 114284698 114284737 -103752421 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr3 114284782 114284804 -103752354 + AT_rich Low_complexity Low_complexity 1 22 0 2378 112 0 0 chr3 114285416 114285720 -103751438 - AluSg SINE Alu -6 304 1 345 172 0 17 chr3 114285745 114285803 -103751355 - AluJ/FLAM SINE Alu -245 57 1 1864 123 0 8 chr3 114285803 114286063 -103751095 - AluSx SINE Alu -13 299 42 1970 123 31 0 chr3 114286112 114286129 -103751029 - AluSq SINE Alu -12 301 286 705 97 0 0 chr3 114286129 114286232 -103750926 + (TTCC)n Simple_repeat Simple_repeat 3 105 0 1970 123 31 0 chr3 114286232 114286506 -103750652 - AluSq SINE Alu -27 286 1 2330 81 3 3 chr3 114286916 114287212 -103749946 + AluSg SINE Alu 1 296 -14 1237 98 0 0 chr3 114287739 114287903 -103749255 - AluSx SINE Alu 0 310 147 514 104 0 0 chr3 114287903 114287970 -103749188 - AluSx SINE Alu -244 68 2 1927 127 60 0 chr3 114287976 114288308 -103748850 - AluSx SINE Alu 0 358 10 645 134 55 31 chr3 114288317 114288444 -103748714 - L1MA8 LINE L1 -164 6127 5998 619 206 67 89 chr3 114288867 114288970 -103748188 - MER5A DNA MER1_type -13 176 77 2371 90 10 3 chr3 114288970 114289280 -103747878 - AluSp SINE Alu 0 313 2 619 206 67 89 chr3 114289280 114289356 -103747802 - MER5A DNA MER1_type -112 77 1 184 206 233 0 chr3 114289484 114289557 -103747601 + MIR SINE MIR 97 186 -76 2522 66 0 0 chr3 114289745 114290047 -103747111 - AluY SINE Alu -9 302 1 1977 135 20 3 chr3 114291615 114291911 -103745247 - AluSq SINE Alu -12 301 1 300 143 79 0 chr3 114292509 114292572 -103744586 - L1MA10 LINE L1 -1 6333 6266 21 0 0 0 chr3 114292575 114292596 -103744562 + AT_rich Low_complexity Low_complexity 1 21 0 258 250 83 42 chr3 114292748 114292868 -103744290 + L1MC4 LINE L1 7140 7264 -778 394 226 158 7 chr3 114293649 114293795 -103743363 + L1MC4 LINE L1 7338 7505 -537 1744 145 24 10 chr3 114293887 114294184 -103742974 + AluJb SINE Alu 1 301 -11 1756 49 58 9 chr3 114294185 114294408 -103742750 + AluY SINE Alu 1 234 -77 2410 90 7 0 chr3 114294441 114294742 -103742416 + AluSp SINE Alu 1 303 -10 1084 153 0 0 chr3 114294742 114294892 -103742266 + AluSg/x SINE Alu 132 281 -29 2070 127 7 0 chr3 114294905 114295197 -103741961 + AluSq SINE Alu 1 294 -19 474 216 142 0 chr3 114295215 114295349 -103741809 + MER5A DNA MER1_type 1 153 -36 499 204 34 118 chr3 114295365 114295498 -103741660 + L1ME2 LINE L1 5948 6091 -75 207 0 0 0 chr3 114295498 114295521 -103741637 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 499 204 34 118 chr3 114295521 114295533 -103741625 + L1ME2 LINE L1 6091 6102 -64 2197 60 8 4 chr3 114295533 114295800 -103741358 - AluSp SINE Alu -45 268 1 499 204 34 118 chr3 114295800 114295883 -103741275 + L1ME2 LINE L1 6102 6166 0 1463 115 0 34 chr3 114296190 114296399 -103740759 - AluY SINE Alu -109 202 1 2152 116 0 0 chr3 114296399 114296559 -103740599 - AluSg SINE Alu -16 294 132 2090 124 10 0 chr3 114296559 114296849 -103740309 - AluSg SINE Alu -17 293 1 2152 116 0 0 chr3 114296849 114296982 -103740176 - AluSg SINE Alu -177 133 1 1287 241 70 21 chr3 114296982 114297410 -103739748 - L1MC4 LINE L1 -2068 5974 5526 2428 95 3 0 chr3 114297413 114297717 -103739441 + AluSp SINE Alu 1 305 -8 2433 76 0 3 chr3 114297796 114298100 -103739058 + AluY SINE Alu 1 303 -8 975 188 0 0 chr3 114298124 114298294 -103738864 + FRAM SINE Alu 1 167 -9 23 0 0 0 chr3 114298315 114298338 -103738820 + AT_rich Low_complexity Low_complexity 1 23 0 2158 121 3 7 chr3 114298438 114298743 -103738415 + AluSx SINE Alu 2 305 -7 2456 77 0 3 chr3 114298813 114299124 -103738034 - AluY SINE Alu -1 310 1 2371 93 3 0 chr3 114299489 114299791 -103737367 + AluSx SINE Alu 1 303 -9 2078 133 0 0 chr3 114299793 114300095 -103737063 + AluSg SINE Alu 1 302 -8 1396 185 28 0 chr3 114300406 114300660 -103736498 + AluJo SINE Alu 7 267 -45 722 181 47 0 chr3 114300782 114300909 -103736249 + FLAM_A SINE Alu 1 133 0 1569 111 5 5 chr3 114301071 114301288 -103735870 - AluSx SINE Alu -95 217 1 23 33 0 0 chr3 114301349 114301379 -103735779 + AT_rich Low_complexity Low_complexity 1 30 0 1047 175 4 95 chr3 114301465 114301717 -103735441 - AluJo SINE Alu -83 229 1 298 313 10 0 chr3 114301727 114301826 -103735332 + L1MC5 LINE L1 7733 7832 -129 1040 85 0 21 chr3 114301932 114302073 -103735085 - AluSg/x SINE Alu -10 300 163 2557 73 0 0 chr3 114302197 114302510 -103734648 - AluSp SINE Alu 0 313 1 507 154 0 106 chr3 114302859 114302982 -103734176 + FLAM_A SINE Alu 1 110 -32 451 91 30 0 chr3 114303031 114303097 -103734061 + AluSg/x SINE Alu 111 178 -131 818 102 51 0 chr3 114303129 114303247 -103733911 + FRAM SINE Alu 44 167 -9 364 180 29 129 chr3 114303247 114303386 -103733772 - MER5A DNA MER1_type -32 157 33 754 151 0 58 chr3 114303403 114303567 -103733591 - FLAM_C SINE Alu 0 133 1 1620 157 29 29 chr3 114304216 114304528 -103732630 - AluJb SINE Alu 0 312 1 28 29 0 0 chr3 114305139 114305174 -103731984 + AT_rich Low_complexity Low_complexity 1 35 0 182 274 48 16 chr3 114305408 114305470 -103731688 + MIR SINE MIR 75 138 -124 275 287 78 16 chr3 114305690 114305819 -103731339 + MIR SINE MIR 120 256 -6 191 264 81 46 chr3 114305877 114305964 -103731194 - L2 LINE L2 -23 3290 3201 182 309 69 86 chr3 114305958 114306133 -103731025 - L2 LINE L2 -412 2902 2731 * 2047 122 31 0 chr3 114306955 114307243 -103729915 - AluSx SINE Alu -15 297 1 2289 108 0 10 chr3 114307532 114307846 -103729312 - AluSq SINE Alu -2 311 1 1980 153 0 0 chr3 114308202 114308497 -103728661 + AluSx SINE Alu 1 295 -17 1807 86 9 0 chr3 114308500 114308732 -103728426 + AluSg SINE Alu 1 234 -76 1488 178 7 24 chr3 114308952 114309250 -103727908 - AluSg SINE Alu -17 293 1 918 132 0 0 chr3 114309250 114309379 -103727779 - AluSq/x SINE Alu -177 135 7 2566 62 7 0 chr3 114309571 114309878 -103727280 + AluSp SINE Alu 1 309 -4 928 134 0 0 chr3 114310011 114310138 -103727020 + AluSq/x SINE Alu 1 127 -185 2129 93 25 0 chr3 114310501 114310779 -103726379 + AluSx SINE Alu 14 298 -14 364 333 24 18 chr3 114311035 114311200 -103725958 - MER91A DNA MER1_type -30 166 1 2326 88 3 3 chr3 114311263 114311559 -103725599 + AluY SINE Alu 1 296 -15 1229 137 0 57 chr3 114311571 114311704 -103725454 - L1MA5 LINE L1 -2 6298 6182 1718 201 0 3 chr3 114311704 114312007 -103725151 - AluJo SINE Alu -10 302 1 1229 137 0 57 chr3 114312007 114312100 -103725058 - L1MA5 LINE L1 -118 6182 6085 636 144 0 10 chr3 114312102 114312206 -103724952 + AluJo/FLAM SINE Alu 6 108 -204 531 171 138 32 chr3 114312207 114312330 -103724828 - AluJb SINE Alu -59 253 118 228 104 21 0 chr3 114312335 114312383 -103724775 - L1M LINE L1 -1001 5302 5254 2218 125 10 0 chr3 114312387 114312691 -103724467 - AluSp SINE Alu -6 307 1 2003 164 24 0 chr3 114312715 114313087 -103724071 - L1 LINE L1 -1016 5130 4750 2069 138 7 0 chr3 114313087 114313383 -103723775 - AluSx SINE Alu -14 298 1 1375 167 0 0 chr3 114313404 114313637 -103723521 - AluSg/x SINE Alu 0 310 78 579 133 10 0 chr3 114313637 114313735 -103723423 - L1 LINE L1 -1832 4314 4216 466 133 0 0 chr3 114313830 114313905 -103723253 - L1 LINE L1 -1947 4199 4125 2106 101 37 7 chr3 114315569 114315867 -103721291 + AluSx SINE Alu 1 307 -5 243 94 0 0 chr3 114315884 114315916 -103721242 + U5 snRNA snRNA 1 32 -84 2363 68 0 16 chr3 114315916 114316223 -103720935 - AluY SINE Alu -9 302 1 2274 106 3 0 chr3 114316243 114316536 -103720622 - AluSp SINE Alu -16 297 4 989 93 7 0 chr3 114316568 114316707 -103720451 - AluY SINE Alu -13 298 159 441 130 14 0 chr3 114316707 114316776 -103720382 - AluJ/FLAM SINE Alu -236 76 7 295 203 58 14 chr3 114316782 114316851 -103720307 + MER3 DNA MER1_type 138 209 0 1099 171 61 128 chr3 114317065 114317456 -103719702 - MLT1A1 LTR MaLR 0 365 1 2442 61 0 3 chr3 114317644 114317938 -103719220 - AluY SINE Alu -18 293 1 2386 92 0 0 chr3 114318732 114319038 -103718120 + AluSg SINE Alu 1 306 -4 22 35 0 0 chr3 114319262 114319291 -103717867 + AT_rich Low_complexity Low_complexity 1 29 0 700 151 0 0 chr3 114319320 114319426 -103717732 - FLAM_C SINE Alu -18 125 20 213 286 29 0 chr3 114319516 114319586 -103717572 - L2 LINE L2 0 3272 3201 2622 176 85 15 chr3 114319856 114320528 -103716630 + L1MCa LINE L1 873 1591 -4835 2196 128 0 3 chr3 114320541 114320847 -103716311 + AluSp SINE Alu 1 305 -8 1370 136 22 134 chr3 114320861 114320980 -103716178 + L1MC2 LINE L1 5218 5349 -980 1637 138 22 19 chr3 114320980 114321248 -103715910 + AluJb SINE Alu 27 295 -17 1370 136 22 134 chr3 114321248 114321390 -103715768 + L1MC2 LINE L1 5349 5425 -904 2031 139 0 23 chr3 114321390 114321692 -103715466 + AluSx SINE Alu 1 295 -17 1370 136 22 134 chr3 114321692 114321838 -103715320 + L1MC2 LINE L1 5425 5586 -743 * 1705 161 54 6 chr3 114321836 114321973 -103715185 + L1MC2 LINE L1 5818 5947 -397 1559 188 4 18 chr3 114321973 114322250 -103714908 + AluJo SINE Alu 1 273 -39 1705 161 54 6 chr3 114322250 114322448 -103714710 + L1MC2 LINE L1 5947 6169 -175 646 205 16 0 chr3 114322453 114322580 -103714578 + FLAM_C SINE Alu 6 134 -9 2062 96 4 14 chr3 114322581 114322862 -103714296 + AluSg SINE Alu 1 278 -32 237 33 0 0 chr3 114322862 114322892 -103714266 + (TAA)n Simple_repeat Simple_repeat 1 30 0 1674 155 3 70 chr3 114322895 114323224 -103713934 + AluJb SINE Alu 1 307 -5 2100 102 6 75 chr3 114323226 114323379 -103713779 + AluSx SINE Alu 1 120 -192 2191 98 10 30 chr3 114323379 114323684 -103713474 + AluSg SINE Alu 1 299 -11 2100 102 6 75 chr3 114323684 114323865 -103713293 + AluSx SINE Alu 120 312 0 475 139 57 177 chr3 114323872 114323902 -103713256 + L1MC2 LINE L1 6156 6188 -156 884 175 60 18 chr3 114323902 114324068 -103713090 - FAM SINE Alu -2 173 1 475 139 57 177 chr3 114324068 114324195 -103712963 + L1MC2 LINE L1 6188 6294 -50 660 238 53 16 chr3 114324331 114324520 -103712638 - MER34B LTR ERV1 -369 196 1 2172 131 0 0 chr3 114324688 114324994 -103712164 + AluSx SINE Alu 1 306 -6 1908 160 17 0 chr3 114325134 114325427 -103711731 - AluJb SINE Alu -14 298 1 2328 107 0 10 chr3 114325518 114325933 -103711225 + AluSx SINE Alu 1 412 0 252 206 14 41 chr3 114326327 114326400 -103710758 + L2 LINE L2 2212 2282 -1032 2057 143 3 3 chr3 114326593 114326900 -103710258 - AluSq SINE Alu -6 307 1 1711 106 30 0 chr3 114326913 114327149 -103710009 - AluSx SINE Alu -69 243 1 2315 84 3 3 chr3 114327559 114327855 -103709303 + AluSg SINE Alu 1 296 -14 1218 99 0 0 chr3 114328388 114328550 -103708608 - AluSx SINE Alu -2 310 149 514 104 0 0 chr3 114328550 114328617 -103708541 - AluSx SINE Alu -245 68 2 1927 127 60 0 chr3 114328623 114328955 -103708203 - AluSx SINE Alu 0 358 10 616 131 57 33 chr3 114328964 114329086 -103708072 - L1MA8 LINE L1 -164 6127 6003 505 186 60 176 chr3 114329507 114329629 -103707529 - MER5A DNA MER1_type -13 176 84 2455 74 10 3 chr3 114329629 114329939 -103707219 - AluSp SINE Alu 0 313 2 505 186 60 176 chr3 114329939 114330015 -103707143 - MER5A DNA MER1_type -105 84 1 184 206 233 0 chr3 114330143 114330216 -103706942 + MIR SINE MIR 97 186 -76 2522 66 0 0 chr3 114330404 114330706 -103706452 - AluY SINE Alu -9 302 1 1977 135 20 3 chr3 114332274 114332570 -103704588 - AluSq SINE Alu -12 301 1 300 143 79 0 chr3 114333168 114333231 -103703927 - L1MA10 LINE L1 -1 6333 6266 21 0 0 0 chr3 114333234 114333255 -103703903 + AT_rich Low_complexity Low_complexity 1 21 0 258 250 83 42 chr3 114333407 114333527 -103703631 + L1MC4 LINE L1 7140 7264 -778 394 226 158 7 chr3 114334308 114334454 -103702704 + L1MC4 LINE L1 7338 7505 -537 1744 145 24 10 chr3 114334546 114334843 -103702315 + AluJb SINE Alu 1 301 -11 1727 54 58 9 chr3 114334844 114335067 -103702091 + AluY SINE Alu 1 234 -77 2365 91 10 0 chr3 114335100 114335398 -103701760 + AluSp SINE Alu 1 301 -12 1084 153 0 0 chr3 114335398 114335548 -103701610 + AluSg/x SINE Alu 134 283 -29 1024 149 12 6 chr3 114335561 114335722 -103701436 + AluSx SINE Alu 1 162 -150 928 134 0 0 chr3 114336063 114336190 -103700968 - AluSq/x SINE Alu -186 127 1 2566 62 7 0 chr3 114336323 114336630 -103700528 - AluSp SINE Alu -4 309 1 918 132 0 0 chr3 114336822 114336951 -103700207 + AluSq/x SINE Alu 7 135 -178 2358 80 0 13 chr3 114336951 114337250 -103699908 + AluSg SINE Alu 1 295 -15 2218 111 3 0 chr3 114337826 114338114 -103699044 + AluSp SINE Alu 1 289 -24 203 0 0 36 chr3 114338124 114338152 -103699006 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 239 316 99 67 chr3 114338152 114338405 -103698753 - MIR SINE MIR 0 262 2 2468 80 3 0 chr3 114338454 114338753 -103698405 + AluSp SINE Alu 1 300 -13 235 250 143 18 chr3 114339071 114339183 -103697975 + L2 LINE L2 3142 3267 -5 214 312 104 0 chr3 114339220 114339297 -103697861 - MER91A DNA MER1_type -12 184 100 233 395 122 7 chr3 114339306 114339453 -103697705 - MER91A DNA MER1_type -20 176 13 1570 97 5 37 chr3 114339646 114339862 -103697296 + AluSp SINE Alu 3 211 -102 472 145 0 0 chr3 114339862 114339931 -103697227 - AluS SINE Alu -243 70 2 1632 194 0 0 chr3 114339936 114340229 -103696929 - AluJb SINE Alu -19 293 1 2474 84 0 3 chr3 114340280 114340589 -103696569 + AluSq SINE Alu 1 308 -5 287 243 214 0 chr3 114340590 114340693 -103696465 - MIR SINE MIR -133 129 5 461 270 15 0 chr3 114341031 114341168 -103695990 - MIR SINE MIR -92 170 32 407 283 19 25 chr3 114341264 114341423 -103695735 + HAL1 LINE L1 2009 2166 -341 2237 99 0 63 chr3 114341448 114341858 -103695300 + AluSx SINE Alu 1 389 0 1502 149 36 11 chr3 114342114 114342390 -103694768 - L1MA4 LINE L1 -11 6289 6007 1415 89 24 5 chr3 114342396 114342609 -103694549 + L1M1 LINE L1 5342 5558 -742 44 35 0 0 chr3 114342756 114342814 -103694344 + AT_rich Low_complexity Low_complexity 1 58 0 834 248 5 10 chr3 114343690 114343896 -103693262 + MIR SINE MIR 7 211 -51 2169 97 6 73 chr3 114344885 114345214 -103691944 - AluSq SINE Alu -6 307 1 2234 93 0 3 chr3 114346012 114346302 -103690856 + AluSq SINE Alu 1 289 -24 201 265 0 0 chr3 114346546 114346595 -103690563 - L2 LINE L2 0 3272 3224 940 129 0 0 chr3 114346927 114347059 -103690099 + FLAM_C SINE Alu 2 133 0 2146 125 7 0 chr3 114347192 114347495 -103689663 - AluSx SINE Alu -7 305 1 2254 162 20 48 chr3 114347942 114348012 -103689146 - MSTB LTR MaLR 0 426 356 2298 104 0 7 chr3 114348012 114348311 -103688847 + AluSp SINE Alu 1 297 -16 2254 162 20 48 chr3 114348311 114348678 -103688480 - MSTB LTR MaLR -70 356 1 2274 106 0 3 chr3 114348709 114349012 -103688146 + AluSg SINE Alu 1 302 -8 245 277 90 73 chr3 114349238 114349415 -103687743 + MLT1H LTR MaLR 109 288 -261 233 250 0 0 chr3 114349577 114349633 -103687525 + MLT1H LTR MaLR 492 547 -2 2301 87 3 3 chr3 114351239 114351537 -103685621 + AluSp SINE Alu 1 298 -15 2218 111 3 0 chr3 114352113 114352401 -103684757 + AluSp SINE Alu 1 289 -24 203 0 0 36 chr3 114352411 114352439 -103684719 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 239 316 99 67 chr3 114352439 114352692 -103684466 - MIR SINE MIR 0 262 2 2491 77 3 0 chr3 114352741 114353041 -103684117 + AluSp SINE Alu 1 301 -12 235 250 143 18 chr3 114353359 114353471 -103683687 + L2 LINE L2 3142 3267 -5 214 312 104 0 chr3 114353508 114353585 -103683573 - MER91A DNA MER1_type -12 184 100 233 395 122 7 chr3 114353594 114353741 -103683417 - MER91A DNA MER1_type -20 176 13 1586 93 5 37 chr3 114353934 114354150 -103683008 + AluSp SINE Alu 3 211 -102 472 145 0 0 chr3 114354150 114354219 -103682939 - AluS SINE Alu -243 70 2 1632 194 0 0 chr3 114354224 114354517 -103682641 - AluJb SINE Alu -19 293 1 2496 81 0 3 chr3 114354568 114354877 -103682281 + AluSq SINE Alu 1 308 -5 287 243 214 0 chr3 114354878 114354981 -103682177 - MIR SINE MIR -133 129 5 2490 76 3 0 chr3 114355606 114355910 -103681248 - AluSp SINE Alu -8 305 1 786 178 6 63 chr3 114356003 114356177 -103680981 + MER20 DNA MER1_type 56 219 0 2351 67 0 24 chr3 114356654 114356952 -103680206 + AluY SINE Alu 1 291 -20 11403 142 33 17 chr3 114357023 114357041 -103680117 + L1M4c LINE L1 1641 1657 -4725 1842 124 0 84 chr3 114357041 114357194 -103679964 + AluSx SINE Alu 1 114 -198 2380 78 20 16 chr3 114357194 114357500 -103679658 + AluSp SINE Alu 1 307 -6 1842 124 0 84 chr3 114357500 114357668 -103679490 + AluSx SINE Alu 114 295 -17 11403 142 33 17 chr3 114357668 114359659 -103677499 + L1M4c LINE L1 1657 4174 -2208 1662 141 36 59 chr3 114359665 114359971 -103677187 + AluSg1 SINE Alu 1 299 -10 554 110 49 0 chr3 114360067 114360149 -103677009 - AluSp/q SINE Alu -17 296 211 2019 115 4 4 chr3 114360262 114360540 -103676618 - AluSx SINE Alu -34 278 1 2435 69 3 0 chr3 114360546 114360836 -103676322 - AluY SINE Alu -20 291 1 267 213 0 0 chr3 114360855 114360916 -103676242 - MER5A DNA MER1_type -80 109 49 588 29 0 0 chr3 114360916 114360986 -103676172 + (ATG)n Simple_repeat Simple_repeat 1 70 0 26 0 0 0 chr3 114362449 114362475 -103674683 + AT_rich Low_complexity Low_complexity 1 26 0 401 192 20 181 chr3 114362509 114362659 -103674499 + L1MC5 LINE L1 7534 7706 -255 1795 155 3 7 chr3 114362659 114362943 -103674215 - AluJb SINE Alu -26 286 4 401 192 20 181 chr3 114362943 114362998 -103674160 + L1MC5 LINE L1 7706 7682 -279 793 210 25 0 chr3 114362998 114363160 -103673998 - FRAM SINE Alu 0 166 1 401 192 20 181 chr3 114363160 114363245 -103673913 + L1MC5 LINE L1 7681 7778 -183 1396 220 90 19 chr3 114363306 114363684 -103673474 + MLT1D LTR MaLR 1 405 -100 2137 254 73 46 chr3 114363686 114364871 -103672287 - L1MEc LINE L1 -2595 3620 2403 225 301 26 46 chr3 114364951 114365104 -103672054 - L1MEc LINE L1 -4348 2048 1899 244 169 14 14 chr3 114365109 114365151 -103672007 + (TA)n Simple_repeat Simple_repeat 2 46 -26 1715 125 0 20 chr3 114365151 114365399 -103671759 - AluSx SINE Alu -26 286 44 244 169 14 14 chr3 114365399 114365427 -103671731 + (TA)n Simple_repeat Simple_repeat 45 72 0 493 232 40 0 chr3 114365487 114365612 -103671546 - L1MEc LINE L1 -4602 1794 1665 1570 210 10 3 chr3 114365708 114366008 -103671150 - AluJo SINE Alu -10 302 1 2055 138 7 0 chr3 114366692 114366983 -103670175 - AluSx SINE Alu -10 302 10 1070 117 0 17 chr3 114367212 114367392 -103669766 + (TTCTCC)n Simple_repeat Simple_repeat 4 180 0 222 115 58 0 chr3 114367392 114367444 -103669714 + CT-rich Low_complexity Low_complexity 2 56 0 2528 53 0 3 chr3 114368103 114368402 -103668756 - AluY SINE Alu -10 301 4 1767 235 41 90 chr3 114368405 114368962 -103668196 - MLT1E LTR MaLR 0 593 64 200 297 20 101 chr3 114369057 114369107 -103668051 + MIR3 SINE MIR 72 124 -84 1578 240 117 35 chr3 114369107 114369587 -103667571 + LTR40a LTR ERVL 1 519 0 200 297 20 101 chr3 114369587 114369684 -103667474 + MIR3 SINE MIR 124 207 -1 1691 103 55 82 chr3 114370063 114370241 -103666917 - AluSx SINE Alu 0 313 145 2022 84 13 57 chr3 114370241 114370540 -103666618 - AluSc SINE Alu -23 286 1 1691 103 55 82 chr3 114370540 114370682 -103666476 - AluSx SINE Alu -168 145 1 524 287 57 29 chr3 114371297 114371362 -103665796 - MIR SINE MIR -1 261 199 1582 165 0 15 chr3 114371362 114371623 -103665535 - AluJb SINE Alu -55 257 1 524 287 57 29 chr3 114371623 114371766 -103665392 - MIR SINE MIR -63 199 47 835 349 89 2 chr3 114371969 114372416 -103664742 + L2 LINE L2 1612 2097 -1217 254 228 139 0 chr3 114372437 114372516 -103664642 + L2 LINE L2 3224 3313 0 215 233 0 0 chr3 114372516 114372559 -103664599 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 192 329 24 24 chr3 114372587 114372669 -103664489 - L2 LINE L2 -200 3072 2991 1395 181 36 58 chr3 114372675 114372824 -103664334 + AluJo SINE Alu 1 141 -171 2299 91 0 23 chr3 114372824 114373133 -103664025 + AluSc SINE Alu 3 304 -5 1395 181 36 58 chr3 114373133 114373292 -103663866 + AluJo SINE Alu 141 302 -10 546 297 78 8 chr3 114373312 114373568 -103663590 + HAL1 LINE L1 1631 1904 -603 899 261 77 22 chr3 114373651 114374054 -103663104 + HAL1 LINE L1 2057 2481 -26 2014 176 39 39 chr3 114375025 114375503 -103661655 + MLT2A2 LTR ERVL 1 479 -75 1654 85 0 14 chr3 114375503 114375714 -103661444 - AluSg/x SINE Alu -22 290 83 2014 176 39 39 chr3 114375714 114375791 -103661367 + MLT2A2 LTR ERVL 479 554 0 668 246 121 5 chr3 114376046 114376245 -103660913 + MIR SINE MIR 40 261 -1 2195 121 3 0 chr3 114376531 114376828 -103660330 + AluSx SINE Alu 6 303 -9 450 285 132 80 chr3 114376892 114377317 -103659841 - MLT1L LTR MaLR -18 597 151 2450 113 126 5 chr3 114377520 114377902 -103659256 - MSTA LTR MaLR 0 428 1 231 211 122 44 chr3 114378079 114378169 -103658989 + L2 LINE L2 2404 2500 -814 1411 221 7 10 chr3 114378194 114378492 -103658666 - AluJo SINE Alu -15 297 1 2401 95 0 0 chr3 114378521 114378827 -103658331 + AluY SINE Alu 1 306 -5 2428 84 0 3 chr3 114379263 114379562 -103657596 + AluSq SINE Alu 1 298 -15 323 333 30 7 chr3 114380386 114380521 -103656637 - MIR SINE MIR -124 138 1 3943 178 33 61 chr3 114381386 114381937 -103655221 - L1MB7 LINE L1 -34 6150 5637 2338 89 3 0 chr3 114381937 114382230 -103654928 - AluSg SINE Alu -16 294 1 3943 178 33 61 chr3 114382230 114382642 -103654516 - L1MB7 LINE L1 -547 5637 5215 917 241 118 104 chr3 114382653 114382850 -103654308 - L1MC4 LINE L1 -1 8041 7848 2110 111 7 24 chr3 114382850 114383148 -103654010 - AluSg SINE Alu -17 293 1 917 241 118 104 chr3 114383148 114383159 -103653999 - L1MC4 LINE L1 -194 7848 7839 2148 97 6 34 chr3 114383159 114383479 -103653679 - AluSp SINE Alu -2 311 1 917 241 118 104 chr3 114383479 114383879 -103653279 - L1MC4 LINE L1 -203 7839 7446 2765 78 8 22 chr3 114383879 114384196 -103652962 + THE1A LTR MaLR 1 314 -41 2276 126 0 0 chr3 114384196 114384498 -103652660 - AluSx SINE Alu -10 302 1 2765 78 8 22 chr3 114384498 114384540 -103652618 + THE1A LTR MaLR 314 355 0 12262 93 17 6 chr3 114384540 114386102 -103651056 + THE1A-int LTR MaLR 1 1580 0 2719 95 3 11 chr3 114386102 114386460 -103650698 + THE1A LTR MaLR 1 355 0 917 241 118 104 chr3 114386460 114386703 -103650455 - L1MC4 LINE L1 -596 7446 7169 1917 130 34 10 chr3 114386703 114386995 -103650163 - AluSx SINE Alu -11 301 3 917 241 118 104 chr3 114386995 114387069 -103650089 - L1MC4 LINE L1 -873 7169 7098 2071 124 3 13 chr3 114387091 114387389 -103649769 + AluSg SINE Alu 1 295 -15 3780 131 9 0 chr3 114387449 114388006 -103649152 + L1PB3 LINE L1 5592 6153 -1 821 183 0 29 chr3 114388074 114388241 -103648917 - FLAM_C SINE Alu 0 163 1 783 294 61 11 chr3 114388304 114388566 -103648592 - L1MC4 LINE L1 -1047 6995 6721 210 37 0 0 chr3 114389750 114389777 -103647381 + (TTAAA)n Simple_repeat Simple_repeat 1 27 0 24 32 0 0 chr3 114390461 114390492 -103646666 + AT_rich Low_complexity Low_complexity 1 31 0 2189 118 0 10 chr3 114390508 114390822 -103646336 - AluSx SINE Alu -1 311 1 1192 171 4 57 chr3 114391015 114391166 -103645992 - MER46A DNA MER2_type -2495 236 101 2358 86 0 7 chr3 114391166 114391470 -103645688 - AluSp SINE Alu -11 302 1 1192 171 4 57 chr3 114391470 114391564 -103645594 - MER46A DNA MER2_type -2630 101 4 583 198 9 9 chr3 114391617 114391723 -103645435 + MLT1D LTR MaLR 1 106 -399 722 240 125 0 chr3 114391742 114391867 -103645291 + MLT1D LTR MaLR 270 378 -127 1955 104 4 29 chr3 114391867 114392146 -103645012 + AluSg SINE Alu 22 293 -17 722 240 125 0 chr3 114392146 114392228 -103644930 + MLT1D LTR MaLR 378 503 -2 1891 146 13 0 chr3 114392379 114392681 -103644477 + AluSx SINE Alu 7 312 0 279 287 114 30 chr3 114392987 114393154 -103644004 - L2 LINE L2 -411 2903 2723 209 285 139 42 chr3 114393869 114394013 -103643145 - L2 LINE L2 -206 3066 2909 334 319 159 0 chr3 114394522 114394660 -103642498 + MIR SINE MIR 47 206 -56 23 0 0 0 chr3 114395481 114395504 -103641654 + AT_rich Low_complexity Low_complexity 1 23 0 2373 235 50 11 chr3 114395602 114396122 -103641036 + MLT1F LTR MaLR 1 540 -2 391 188 487 0 chr3 114396170 114396287 -103640871 + MER96 DNA MER1_type? 2 175 0 2136 172 24 33 chr3 114397009 114397433 -103639725 - L1MB4 LINE L1 -2 6178 5759 248 331 73 0 chr3 114397446 114397582 -103639576 - L2 LINE L2 -615 2699 2554 401 270 34 22 chr3 114398236 114398392 -103638766 - MIR SINE MIR -63 145 8 345 360 68 0 chr3 114398829 114398976 -103638182 + MIR3 SINE MIR 37 193 -15 21 0 0 0 chr3 114400353 114400374 -103636784 + AT_rich Low_complexity Low_complexity 1 21 0 2103 125 3 0 chr3 114400627 114400915 -103636243 - AluSx SINE Alu -19 293 5 251 238 0 75 chr3 114401072 114401219 -103635939 + GA-rich Low_complexity Low_complexity 1 136 0 2232 116 0 3 chr3 114401378 114401688 -103635470 + AluSx SINE Alu 1 309 -3 1347 205 61 14 chr3 114402150 114402443 -103634715 + MER61A LTR ERV1 1 307 -36 329 317 56 43 chr3 114403511 114403672 -103633486 + MIR SINE MIR 56 218 -44 181 329 79 26 chr3 114403917 114403993 -103633165 + MIR SINE MIR 63 142 -66 309 182 0 0 chr3 114405007 114405062 -103632096 - L1MC4 LINE L1 -1339 6703 6649 234 0 0 0 chr3 114405569 114405595 -103631563 + (CA)n Simple_repeat Simple_repeat 1 26 0 1494 209 29 3 chr3 114406100 114406416 -103630742 + L1MD1 LINE L1 5510 5833 -409 2145 113 14 0 chr3 114406430 114406722 -103630436 + AluSx SINE Alu 1 296 -16 2044 89 7 14 chr3 114407289 114407569 -103629589 - L1PA8 LINE L1 0 6172 5895 325 350 36 75 chr3 114408043 114408323 -103628835 + L2 LINE L2 3004 3272 0 2427 103 0 0 chr3 114408833 114409144 -103628014 + AluSx SINE Alu 1 311 -1 1973 185 15 50 chr3 114410847 114411247 -103625911 - MLT1B LTR MaLR 0 390 5 1861 112 86 4 chr3 114411326 114411604 -103625554 - AluSx SINE Alu -9 303 3 2601 133 3 6 chr3 114412385 114412747 -103624411 + THE1B LTR MaLR 3 363 -1 21 0 0 0 chr3 114413153 114413174 -103623984 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr3 114414197 114414229 -103622929 + AT_rich Low_complexity Low_complexity 1 32 0 2684 114 15 89 chr3 114414294 114414775 -103622383 + MER65A LTR ERV1 1 445 0 2401 94 0 0 chr3 114414779 114415077 -103622081 - AluSg SINE Alu -11 299 2 6929 70 16 26 chr3 114416487 114418296 -103618862 - SVA Other Other -551 1386 1 262 111 0 32 chr3 114418296 114418359 -103618799 + (GGGAGA)n Simple_repeat Simple_repeat 1 61 0 558 318 60 51 chr3 114418522 114418969 -103618189 + L2 LINE L2 2613 3054 -218 312 119 0 0 chr3 114419227 114419286 -103617872 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 330 224 0 13 chr3 114419523 114419599 -103617559 + LTR33A LTR ERVL 441 515 -8 289 236 27 64 chr3 114420093 114420203 -103616955 - MLT1L LTR MaLR 0 615 510 2816 143 39 5 chr3 114420802 114421216 -103615942 - MSTC LTR MaLR 0 428 1 182 185 109 98 chr3 114422738 114422830 -103614328 - L3 LINE CR1 -197 1380 1288 225 108 0 0 chr3 114424266 114424303 -103612855 + (T)n Simple_repeat Simple_repeat 1 37 0 1776 153 0 30 chr3 114424852 114425147 -103612011 - AluJo SINE Alu -26 286 1 858 291 138 33 chr3 114425183 114425634 -103611524 + L2 LINE L2 2454 2951 -363 245 161 36 0 chr3 114477258 114477314 -103559844 + (TA)n Simple_repeat Simple_repeat 2 59 0 2113 124 3 0 chr3 114477368 114477667 -103559491 - AluSx SINE Alu -12 300 1 3063 131 10 18 chr3 114477827 114478331 -103558827 + L1PB1 LINE L1 5652 6151 0 252 275 61 84 chr3 114478363 114478494 -103558664 - MIR SINE MIR -11 251 124 194 213 149 0 chr3 114479180 114479227 -103557931 + MIR3 SINE MIR 155 208 0 396 276 153 25 chr3 114479617 114479780 -103557378 + MIR SINE MIR 5 188 -74 423 231 32 70 chr3 114479880 114479955 -103557203 - L2 LINE L2 -23 3290 3223 2265 109 3 3 chr3 114479955 114480267 -103556891 + AluSx SINE Alu 1 312 0 423 231 32 70 chr3 114480267 114480347 -103556811 - L2 LINE L2 -90 3223 3141 2676 147 18 26 chr3 114480349 114480845 -103556313 - L1PA16 LINE L1 -2 6164 5673 622 300 56 44 chr3 114480850 114481120 -103556038 - MLT1F LTR MaLR -269 273 1 1100 254 197 42 chr3 114481142 114481716 -103555442 - L2 LINE L2 -339 2975 2313 24 32 0 0 chr3 114482195 114482226 -103554932 + AT_rich Low_complexity Low_complexity 1 31 0 321 296 32 72 chr3 114483422 114483547 -103553611 - L2 LINE L2 -1 3312 3193 785 167 0 29 chr3 114483653 114483791 -103553367 + AluJo SINE Alu 3 136 -176 2132 63 0 0 chr3 114483868 114484121 -103553037 + AluY SINE Alu 48 300 -11 22 35 0 0 chr3 114485532 114485561 -103551597 + AT_rich Low_complexity Low_complexity 1 29 0 336 319 99 28 chr3 114488162 114488344 -103548814 - MIR SINE MIR -21 241 47 242 278 14 42 chr3 114489830 114489902 -103547256 - L2 LINE L2 0 3272 3203 709 335 134 37 chr3 114489980 114490014 -103547144 + L2 LINE L2 2681 2710 -603 2400 86 0 0 chr3 114490014 114490318 -103546840 + AluY SINE Alu 1 304 -7 709 335 134 37 chr3 114490318 114490872 -103546286 + L2 LINE L2 2710 3310 -3 2331 89 0 0 chr3 114492244 114492537 -103544621 - AluSg1 SINE Alu -14 295 3 5401 145 20 0 chr3 114492747 114493715 -103543443 - L1PA16 LINE L1 -1 6165 5198 695 217 153 0 chr3 114494045 114494202 -103542956 + MER5A DNA MER1_type 9 189 0 292 354 63 51 chr3 114495856 114495935 -103541223 - L2 LINE L2 -48 3224 3147 1777 205 8 11 chr3 114495935 114496301 -103540857 + MLT1A1 LTR MaLR 1 365 0 292 354 63 51 chr3 114496301 114496458 -103540700 - L2 LINE L2 -125 3147 2985 684 355 115 28 chr3 114496460 114497138 -103540020 - L3 LINE CR1 -251 1326 590 35 41 0 0 chr3 114497542 114497591 -103539567 + AT_rich Low_complexity Low_complexity 1 49 0 2156 148 17 57 chr3 114497593 114497999 -103539159 + MLT1B LTR MaLR 1 390 0 810 246 58 7 chr3 114498005 114498298 -103538860 - L1MC5 LINE L1 -51 7910 7603 951 219 99 21 chr3 114498360 114498743 -103538415 - L1MC5 LINE L1 -466 7495 7083 480 238 47 36 chr3 114499647 114499840 -103537318 + L1MA9 LINE L1 6102 6296 -16 222 284 134 0 chr3 114500074 114500141 -103537017 + L3 LINE CR1 1065 1140 -437 376 269 39 15 chr3 114500985 114501115 -103536043 - MER117 DNA MER1_type -63 134 2 2171 125 3 3 chr3 114501570 114501874 -103535284 - AluSx SINE Alu -4 308 5 2288 69 0 0 chr3 114501967 114502243 -103534915 - AluY SINE Alu -14 297 22 2902 148 6 34 chr3 114502943 114503476 -103533682 - L1MB3 LINE L1 0 6419 5902 4370 153 22 9 chr3 114503487 114504258 -103532900 - L1MA8 LINE L1 -167 6124 5344 913 181 146 4 chr3 114504255 114504481 -103532677 - L1MB3 LINE L1 -507 5912 5655 * 424 211 88 0 chr3 114504470 114504584 -103532574 - L1MB3 LINE L1 -5065 1319 1196 * 845 110 0 0 chr3 114504584 114504693 -103532465 - AluSg/x SINE Alu -17 295 187 2009 125 4 0 chr3 114504693 114504972 -103532186 - AluSc SINE Alu -27 282 3 1063 79 7 14 chr3 114504972 114505111 -103532047 - AluSq/x SINE Alu -174 138 1 5568 166 43 44 chr3 114505111 114505206 -103531952 - L1MB3 LINE L1 -5177 1207 1113 2389 89 0 0 chr3 114505206 114505509 -103531649 - AluY SINE Alu -6 305 3 5568 166 43 44 chr3 114505509 114505682 -103531476 - L1MB3 LINE L1 -5271 1113 941 2157 142 0 0 chr3 114505682 114505993 -103531165 - AluSx SINE Alu -1 311 1 1230 60 0 22 chr3 114506003 114506187 -103530971 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5568 166 43 44 chr3 114506187 114507095 -103530063 - L1MB3 LINE L1 -5452 932 20 296 347 177 9 chr3 114507124 114507279 -103529879 - MIR SINE MIR -63 145 16 6933 57 7 1 chr3 114507300 114507325 -103529833 + L1PA6 LINE L1 4646 4669 -1485 2053 138 3 0 chr3 114507325 114507616 -103529542 + AluSx SINE Alu 1 292 -20 6933 57 7 1 chr3 114507616 114509092 -103528066 + L1PA6 LINE L1 4669 6147 -7 1831 145 104 65 chr3 114509211 114509645 -103527513 - LTR47A LTR ERVL -1 451 1 22 0 0 0 chr3 114510249 114510271 -103526887 + AT_rich Low_complexity Low_complexity 1 22 0 262 311 145 8 chr3 114510271 114510506 -103526652 - L1MC/D LINE L1 -1935 5873 5607 300 288 32 0 chr3 114510813 114510938 -103526220 - L1ME4a LINE L1 -2 6119 5991 1886 174 0 0 chr3 114511492 114511785 -103525373 + AluJb SINE Alu 1 293 -19 549 305 17 17 chr3 114512583 114512760 -103524398 + MIR SINE MIR 52 228 -34 365 303 53 26 chr3 114512796 114512963 -103524195 - MIR SINE MIR -64 144 17 621 90 0 0 chr3 114513195 114513284 -103523874 + (TTCC)n Simple_repeat Simple_repeat 2 90 0 518 238 73 13 chr3 114515075 114515226 -103521932 + MIR SINE MIR 1 160 -102 1166 148 42 4 chr3 114515550 114515787 -103521371 - L1MA3 LINE L1 0 6305 6060 243 310 69 17 chr3 114515954 114516070 -103521088 + L3b LINE CR1 1281 1402 -181 295 260 113 59 chr3 114516519 114516704 -103520454 - MIR3 SINE MIR -55 207 3 457 300 33 0 chr3 114520554 114520674 -103516484 + L2 LINE L2 3190 3313 0 2135 116 20 3 chr3 114520862 114521165 -103515993 + AluSx SINE Alu 5 312 0 276 304 116 29 chr3 114522144 114522282 -103514876 - MIR SINE MIR -56 206 57 233 404 37 29 chr3 114523619 114523755 -103513403 + L2 LINE L2 3116 3252 -20 2352 44 4 0 chr3 114525764 114526036 -103511122 - AluY SINE Alu -18 293 21 533 288 61 0 chr3 114526355 114526369 -103510789 - MER69A DNA AcHobo -2349 177 165 216 0 0 0 chr3 114526369 114526393 -103510765 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 533 288 61 0 chr3 114526393 114526541 -103510617 - MER69A DNA AcHobo -2361 165 5 618 301 111 0 chr3 114526771 114526987 -103510171 - MIR SINE MIR -21 241 2 191 355 0 0 chr3 114527288 114527364 -103509794 + MIR SINE MIR 22 97 -111 872 202 54 25 chr3 114527424 114527627 -103509531 + U3 snRNA snRNA 1 209 -8 258 296 25 86 chr3 114528009 114528171 -103508987 + LTR68 LTR ERV1 297 448 -292 211 388 10 0 chr3 114528427 114528530 -103508628 + MER5A DNA MER1_type 53 156 -33 265 335 102 29 chr3 114529341 114529616 -103507542 - L2 LINE L2 -1387 1927 1633 2334 99 0 6 chr3 114529646 114529960 -103507198 - AluSx SINE Alu 0 312 1 1710 149 35 62 chr3 114530316 114530686 -103506472 + MER46B DNA MER2_type 2 236 0 2212 86 14 7 chr3 114531357 114531647 -103505511 + AluSx SINE Alu 1 292 -20 1892 158 114 14 chr3 114532464 114532824 -103504334 - MSTD LTR MaLR 0 396 1 4759 228 66 19 chr3 114533428 114534720 -103502438 + L1ME1 LINE L1 3940 5326 -840 2357 95 3 0 chr3 114534720 114535026 -103502132 + AluSp SINE Alu 1 307 -6 4759 228 66 19 chr3 114535026 114535297 -103501861 + L1ME1 LINE L1 5326 5583 -583 860 189 0 0 chr3 114535299 114535452 -103501706 - FRAM SINE Alu -3 173 21 1761 235 54 21 chr3 114535461 114536024 -103501134 + L1ME1 LINE L1 5574 6310 -2 729 233 87 44 chr3 114536291 114536497 -103500661 + MER58C DNA MER1_type 1 215 0 698 285 80 53 chr3 114536759 114537037 -103500121 + HAL1b LINE L1 292 561 -787 2481 78 0 0 chr3 114537037 114537343 -103499815 + AluSc SINE Alu 1 306 -3 698 285 80 53 chr3 114537343 114537611 -103499547 + HAL1b LINE L1 561 853 -495 24 67 0 0 chr3 114538049 114538094 -103499064 + AT_rich Low_complexity Low_complexity 1 45 0 924 251 86 26 chr3 114538190 114538529 -103498629 + L1MC4a LINE L1 5558 5916 -1892 207 0 0 0 chr3 114538576 114538599 -103498559 + (CA)n Simple_repeat Simple_repeat 2 24 0 251 327 40 76 chr3 114538802 114539025 -103498133 - L2 LINE L2 -177 3095 2881 261 242 124 25 chr3 114539645 114539806 -103497352 - L1ME4a LINE L1 -1 6120 5944 231 238 157 61 chr3 114541900 114542047 -103495111 - MARNA DNA Mariner -27 559 399 477 304 37 0 chr3 114542155 114542316 -103494842 + MARNA DNA Mariner 244 410 -176 650 106 0 0 chr3 114542447 114542541 -103494617 - AluY SINE Alu -4 307 214 308 239 83 64 chr3 114542589 114542698 -103494460 - L3 LINE CR1 -74 1503 1393 357 24 0 0 chr3 114543107 114543149 -103494009 + (TG)n Simple_repeat Simple_repeat 1 42 0 252 241 0 0 chr3 114543204 114543283 -103493875 + (TA)n Simple_repeat Simple_repeat 2 80 0 388 357 103 34 chr3 114543287 114543853 -103493305 - L2 LINE L2 -33 3239 2648 739 346 133 26 chr3 114544392 114545124 -103492034 - L2 LINE L2 -659 2655 1846 337 65 0 0 chr3 114545125 114545171 -103491987 - MADE1 DNA Mariner -1 79 34 1118 148 6 0 chr3 114545245 114545414 -103491744 + AluSq SINE Alu 138 307 -6 24 0 0 0 chr3 114545653 114545677 -103491481 + AT_rich Low_complexity Low_complexity 1 24 0 361 289 66 33 chr3 114546073 114546225 -103490933 - MIR3 SINE MIR -47 161 5 338 254 154 0 chr3 114547108 114547238 -103489920 - L1MC5 LINE L1 -79 7882 7733 1719 123 89 20 chr3 114548997 114549289 -103487869 - AluSx SINE Alu 0 312 1 2442 81 0 0 chr3 114549504 114549812 -103487346 - AluY SINE Alu -3 308 1 198 0 0 0 chr3 114550232 114550254 -103486904 + (TG)n Simple_repeat Simple_repeat 1 22 0 327 254 249 17 chr3 114550344 114550517 -103486641 - MIR SINE MIR -37 225 13 259 293 171 29 chr3 114553422 114553562 -103483596 + MIR SINE MIR 30 189 -73 1115 310 89 12 chr3 114555049 114555533 -103481625 + L2 LINE L2 2396 2916 -398 26 50 0 0 chr3 114555534 114555574 -103481584 + AT_rich Low_complexity Low_complexity 1 40 0 321 26 0 0 chr3 114555612 114555650 -103481508 + (GA)n Simple_repeat Simple_repeat 1 38 0 725 270 175 32 chr3 114555772 114556232 -103480926 - L2 LINE L2 -20 3293 2789 307 255 132 0 chr3 114556231 114556337 -103480821 + L2 LINE L2 3098 3217 -96 * 2270 95 80 0 chr3 114556337 114556674 -103480484 - THE1B LTR MaLR 0 364 1 25 0 0 0 chr3 114560788 114560813 -103476345 + AT_rich Low_complexity Low_complexity 1 25 0 568 269 40 114 chr3 114563017 114563314 -103473844 + L2 LINE L2 3039 3313 0 651 193 20 40 chr3 114563588 114563777 -103473381 + L1ME3 LINE L1 5887 6071 -91 2738 50 13 4 chr3 114563799 114564740 -103472418 - L1PA6 LINE L1 -1 6153 5036 326 271 202 0 chr3 114564814 114564943 -103472215 - MIR SINE MIR 0 262 108 264 318 92 44 chr3 114565483 114565798 -103471360 + L2 LINE L2 2648 2977 -337 406 155 60 43 chr3 114565837 114565865 -103471293 - L1M1 LINE L1 -4104 3461 3435 3767 118 30 13 chr3 114565865 114566466 -103470692 - LTR36 LTR ERV1 0 611 1 406 155 60 43 chr3 114566466 114566553 -103470605 - L1M1 LINE L1 -4130 3435 3344 2458 55 0 0 chr3 114568364 114568653 -103468505 + AluY SINE Alu 1 289 -22 810 149 8 0 chr3 114569026 114569147 -103468011 + FLAM_C SINE Alu 3 124 -19 361 359 30 42 chr3 114569172 114569434 -103467724 - MIR SINE MIR 0 262 4 23 54 0 0 chr3 114569851 114569888 -103467270 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr3 114570540 114570570 -103466588 + AT_rich Low_complexity Low_complexity 1 30 0 237 108 0 0 chr3 114570749 114570786 -103466372 + (TAA)n Simple_repeat Simple_repeat 2 38 0 1140 241 13 0 chr3 114570787 114571019 -103466139 - MIR SINE MIR -11 251 17 1901 136 13 16 chr3 114572645 114572955 -103464203 + AluJb SINE Alu 1 309 -3 330 115 0 0 chr3 114574685 114574737 -103462421 + (TTCC)n Simple_repeat Simple_repeat 4 55 0 1128 152 88 0 chr3 114574744 114574961 -103462197 - L1MD1 LINE L1 -9 6233 5998 910 316 64 53 chr3 114576003 114576532 -103460626 + L2 LINE L2 1791 2325 -989 302 255 0 69 chr3 114577308 114577410 -103459748 - L1ME4a LINE L1 -60 6061 5967 276 268 61 0 chr3 114577818 114577900 -103459258 - MER91B DNA MER1_type -68 122 36 393 233 90 15 chr3 114578455 114578588 -103458570 - MIR SINE MIR -13 249 107 570 266 8 0 chr3 114578709 114578833 -103458325 - FLAM_A SINE Alu -17 125 1 1247 217 151 58 chr3 114580727 114581224 -103455934 - L1MD2 LINE L1 -15 6344 5802 184 323 75 21 chr3 114583142 114583235 -103453923 + MIR3 SINE MIR 9 106 -102 1132 88 0 7 chr3 114583336 114583484 -103453674 - AluSc SINE Alu -13 296 150 296 243 0 29 chr3 114584090 114584160 -103452998 + MIR SINE MIR 9 76 -186 7801 104 24 68 chr3 114585499 114586857 -103450301 - HSMAR2 DNA Mariner 0 1302 5 963 277 60 69 chr3 114588528 114589166 -103447992 - L1MC4a LINE L1 -1922 5886 5255 473 322 125 45 chr3 114589168 114590052 -103447106 - L1MC4a LINE L1 -893 5253 4297 2403 86 3 3 chr3 114590135 114590448 -103446710 - AluSq SINE Alu 0 313 1 2300 107 10 3 chr3 114590919 114591229 -103445929 - AluSx SINE Alu 0 312 1 2428 71 14 0 chr3 114591509 114591805 -103445353 + AluY SINE Alu 1 300 -11 370 259 98 75 chr3 114592276 114592450 -103444708 - MIR SINE MIR -78 184 7 201 269 0 43 chr3 114594287 114594380 -103442778 + CT-rich Low_complexity Low_complexity 2 90 0 28 0 0 0 chr3 114595089 114595117 -103442041 + AT_rich Low_complexity Low_complexity 1 28 0 1178 187 80 33 chr3 114595124 114595488 -103441670 - L1MA9 LINE L1 -38 6274 5894 24 0 0 0 chr3 114595906 114595930 -103441228 + AT_rich Low_complexity Low_complexity 1 24 0 4408 134 28 25 chr3 114595988 114596802 -103440356 + L1MA9 LINE L1 5495 6311 -1 277 288 25 0 chr3 114596805 114596885 -103440273 - MIR SINE MIR -6 256 175 539 311 70 36 chr3 114596941 114597298 -103439860 + LTR16B LTR ERVL 43 411 -53 1014 245 180 43 chr3 114597312 114597401 -103439757 + HAL1 LINE L1 1214 1290 -1217 2229 116 0 0 chr3 114597401 114597693 -103439465 + AluSx SINE Alu 9 300 -12 1014 245 180 43 chr3 114597693 114598040 -103439118 + HAL1 LINE L1 1290 1588 -919 2158 112 164 0 chr3 114598040 114598406 -103438752 - MSTA LTR MaLR -2 426 1 1014 245 180 43 chr3 114598406 114598614 -103438544 + HAL1 LINE L1 1588 1947 -560 23 0 0 0 chr3 114598627 114598650 -103438508 + AT_rich Low_complexity Low_complexity 1 23 0 618 170 112 31 chr3 114598733 114598992 -103438166 - L1MC5 LINE L1 -35 7926 7647 2062 103 11 45 chr3 114599080 114599438 -103437720 + Tigger2a DNA MER2_type 1 346 -88 809 85 39 0 chr3 114599438 114599567 -103437591 - L1MA7 LINE L1 -70 6221 6088 517 251 46 64 chr3 114599561 114599951 -103437207 - L1MC5 LINE L1 -302 7659 7277 * 1581 182 14 30 chr3 114600105 114600402 -103436756 + AluJb SINE Alu 1 292 -20 231 259 0 17 chr3 114600525 114600583 -103436575 + MER63 DNA MER1_type 688 744 -316 302 250 139 28 chr3 114600679 114600787 -103436371 + HAL1 LINE L1 2244 2363 -144 2174 166 23 73 chr3 114601809 114602290 -103434868 - LTR32 LTR ERVL 0 471 15 206 206 10 69 chr3 114602464 114602566 -103434592 + (TTTA)n Simple_repeat Simple_repeat 1 96 0 1173 124 0 0 chr3 114602601 114602787 -103434371 + L1PB1 LINE L1 5841 6026 -125 252 325 127 32 chr3 114603664 114603790 -103433368 - L2 LINE L2 -14 3258 3121 189 176 59 39 chr3 114604199 114604250 -103432908 - L2 LINE L2 -217 3055 3004 694 219 7 20 chr3 114604298 114604449 -103432709 - MIR SINE MIR -32 230 82 404 302 50 39 chr3 114605555 114605734 -103431424 + MIR SINE MIR 36 216 -46 425 287 134 13 chr3 114606591 114606748 -103430410 + MER5B DNA MER1_type 3 178 0 2387 76 17 0 chr3 114606914 114607216 -103429942 + AluSx SINE Alu 1 307 -5 2127 86 32 0 chr3 114608463 114608743 -103428415 - AluSg1 SINE Alu -13 296 8 540 332 39 10 chr3 114609971 114610179 -103426979 + MIR SINE MIR 20 233 -29 1769 183 11 0 chr3 114610270 114610554 -103426604 - AluJb SINE Alu -21 291 5 2234 104 0 25 chr3 114610816 114611132 -103426026 - AluSc SINE Alu -1 308 1 5118 114 9 0 chr3 114611169 114611183 -103425975 - L1PA8 LINE L1 0 6172 6160 4236 126 10 35 chr3 114611183 114611428 -103425730 - L1PA16 LINE L1 -3 6163 5913 2585 46 0 0 chr3 114611428 114611732 -103425426 + AluY SINE Alu 1 304 -7 4236 126 10 35 chr3 114611732 114612198 -103424960 - L1PA16 LINE L1 -253 5913 5470 5118 114 9 0 chr3 114612198 114612972 -103424186 - L1PA8 LINE L1 -12 6160 5377 24 0 0 0 chr3 114613197 114613221 -103423937 + AT_rich Low_complexity Low_complexity 1 24 0 2212 66 43 16 chr3 114613597 114613901 -103423257 - AluSp SINE Alu -1 312 1 289 368 0 0 chr3 114614097 114614184 -103422974 - MER5A DNA MER1_type -3 186 100 201 39 0 0 chr3 114614188 114614214 -103422944 + (T)n Simple_repeat Simple_repeat 1 26 0 202 260 82 27 chr3 114614214 114614287 -103422871 + MER5A DNA MER1_type 109 185 -4 2282 59 63 0 chr3 114614391 114614678 -103422480 + AluY SINE Alu 1 305 -6 4676 218 25 29 chr3 114616909 114618247 -103418911 + L1M4 LINE L1 3974 5305 -841 1035 153 11 0 chr3 114618258 114618448 -103418710 + L1PB1 LINE L1 6 197 -6666 * 12760 192 36 15 chr3 114618445 114619761 -103417397 + L1PB1 LINE L1 1392 2679 -4188 2318 90 0 0 chr3 114619761 114620050 -103417108 + AluY SINE Alu 1 289 -22 12760 192 36 15 chr3 114620050 114620442 -103416716 + L1PB1 LINE L1 2679 3061 -3806 2327 105 0 0 chr3 114620442 114620736 -103416422 - AluSx SINE Alu -18 294 1 12760 192 36 15 chr3 114620736 114623542 -103413616 + L1PB1 LINE L1 3061 5806 -1061 2687 25 52 0 chr3 114623542 114623867 -103413291 + L1PA7 LINE L1 5812 6153 -1 12760 192 36 15 chr3 114623867 114624337 -103412821 + L1PB1 LINE L1 5806 6265 -602 495 33 0 0 chr3 114624337 114624398 -103412760 + (TG)n Simple_repeat Simple_repeat 2 62 0 12760 192 36 15 chr3 114624398 114624754 -103412404 + L1PB1 LINE L1 6265 6867 0 5667 152 54 17 chr3 114624730 114625751 -103411407 + L1MC1 LINE L1 5987 7045 -4 * 261 329 38 0 chr3 114626748 114626827 -103410331 - MIR3 SINE MIR -7 201 120 617 258 6 22 chr3 114628297 114628479 -103408679 + MER20 DNA MER1_type 34 212 -7 2407 77 0 3 chr3 114628480 114628777 -103408381 - AluSg SINE Alu -14 296 1 207 267 123 75 chr3 114681007 114681153 -103356005 + L2 LINE L2 2314 2466 -848 1747 129 4 36 chr3 114681168 114681446 -103355712 - AluSq SINE Alu -44 269 1 430 316 128 34 chr3 114681464 114681761 -103355397 + L2 LINE L2 2554 2878 -436 882 252 14 18 chr3 114681768 114681986 -103355172 + MER58A DNA MER1_type 6 222 -2 663 309 67 45 chr3 114681999 114682420 -103354738 + L2 LINE L2 2881 3310 -3 207 175 0 0 chr3 114682612 114682652 -103354506 - L2 LINE L2 0 3313 3274 8992 154 28 12 chr3 114682746 114685545 -103351613 - L1MA4 LINE L1 -5 6295 3461 847 135 7 27 chr3 114685545 114685693 -103351465 + MSTA LTR MaLR 1 145 -283 265 299 65 23 chr3 114685708 114685953 -103351205 - L1M3b LINE L1 -6024 257 1 2414 133 70 5 chr3 114686409 114686809 -103350349 - MSTB LTR MaLR 0 426 1 1844 129 37 0 chr3 114686836 114687107 -103350051 - AluSx SINE Alu -30 282 2 15157 53 62 7 chr3 114688033 114690161 -103346997 - L1P LINE L1 -3892 2254 8 831 230 109 4 chr3 114690289 114690537 -103346621 + Charlie2 DNA MER1_type 46 319 -2463 803 276 62 47 chr3 114690554 114690838 -103346320 + Charlie2 DNA MER1_type 1865 2160 -702 2208 90 3 30 chr3 114690838 114691139 -103346019 + AluSx SINE Alu 1 293 -19 803 276 62 47 chr3 114691139 114691339 -103345819 + Charlie2 DNA MER1_type 2160 2356 -506 457 346 132 8 chr3 114691340 114691597 -103345561 + L2 LINE L2 2666 2954 -360 507 332 54 5 chr3 114691653 114691858 -103345300 + L2 LINE L2 3081 3295 -18 567 256 63 60 chr3 114692313 114692614 -103344544 + MLT1L LTR MaLR 203 504 -111 367 248 147 9 chr3 114692656 114692765 -103344393 - L2 LINE L2 0 3313 3190 569 315 38 5 chr3 114693769 114693953 -103343205 - MIR SINE MIR -4 258 69 1003 168 0 23 chr3 114694749 114694922 -103342236 - AluJo SINE Alu -2 310 142 2163 142 54 29 chr3 114694925 114695421 -103341737 + MLT2A2 LTR ERVL 1 532 -22 517 213 28 9 chr3 114695421 114695529 -103341629 - AluJo SINE Alu -149 163 54 2587 45 0 3 chr3 114695543 114695851 -103341307 - AluY SINE Alu -4 307 1 207 100 0 0 chr3 114695984 114696014 -103341144 + (TG)n Simple_repeat Simple_repeat 1 30 0 639 236 11 37 chr3 114696139 114696330 -103340828 + MER20 DNA MER1_type 33 218 -1 1496 96 0 0 chr3 114698039 114698226 -103338932 + AluSg1 SINE Alu 1 187 -122 1175 123 0 0 chr3 114698226 114698389 -103338769 + AluSg/x SINE Alu 143 305 -4 1953 219 108 51 chr3 114699107 114699793 -103337365 - MER50 LTR ERV1 0 734 10 857 111 209 91 chr3 114700050 114700303 -103336855 - LTR18B LTR ERVL -14 600 318 958 210 11 0 chr3 114700307 114700493 -103336665 - LTR18B LTR ERVL -426 188 1 1549 266 40 11 chr3 114700759 114701311 -103335847 + L1MDb LINE L1 13 736 -5673 3869 130 8 12 chr3 114702154 114702173 -103334985 - MER41B LTR ERV1 0 635 617 2190 126 50 6 chr3 114702173 114702530 -103334628 + THE1C LTR MaLR 1 373 -2 3869 130 8 12 chr3 114702530 114703148 -103334010 - MER41B LTR ERV1 -18 617 1 28 0 0 0 chr3 114703587 114703615 -103333543 + AT_rich Low_complexity Low_complexity 1 28 0 394 343 41 0 chr3 114704555 114704727 -103332431 + ERVL LTR ERVL 3697 3875 -1889 792 308 42 16 chr3 114704803 114705111 -103332047 + ERVL LTR ERVL 4017 4332 -1322 442 346 27 0 chr3 114705144 114705332 -103331826 + ERVL LTR ERVL 4477 4669 -1095 23 33 0 0 chr3 114706018 114706048 -103331110 + AT_rich Low_complexity Low_complexity 1 30 0 1816 112 64 70 chr3 114706303 114706615 -103330543 - AluSq SINE Alu -3 310 1 9765 191 27 39 chr3 114706853 114708569 -103328589 - L1MC3 LINE L1 -207 7996 6260 1787 166 6 41 chr3 114708569 114708888 -103328270 + AluJo SINE Alu 2 309 -3 2289 101 0 7 chr3 114708894 114709200 -103327958 + AluSg1 SINE Alu 1 304 -5 9765 191 27 39 chr3 114709200 114709898 -103327260 - L1MC3 LINE L1 -1948 6255 5595 839 107 16 0 chr3 114709900 114710022 -103327136 + AluSp/q SINE Alu 188 311 -2 815 220 45 0 chr3 114710046 114710269 -103326889 + L1MA4 LINE L1 6068 6300 0 1495 274 70 4 chr3 114710312 114710870 -103326288 + L1M4 LINE L1 4404 4998 -1148 1674 77 5 0 chr3 114710942 114711150 -103326008 + AluSq SINE Alu 1 209 -104 1723 218 22 75 chr3 114711351 114711375 -103325783 - L1MC3 LINE L1 -3099 3465 3441 2282 146 8 3 chr3 114711375 114711739 -103325419 - MER47A DNA MER2_type 0 366 1 1723 218 22 75 chr3 114711739 114712398 -103324760 - L1MC3 LINE L1 -3123 3441 2818 616 75 0 0 chr3 114712420 114712500 -103324658 - Alu SINE Alu -13 299 220 525 227 47 0 chr3 114712502 114712652 -103324506 - L1MC3 LINE L1 -3934 2811 2655 2274 260 27 46 chr3 114712655 114713506 -103323652 - L1MC3 LINE L1 -5210 835 1 659 297 34 51 chr3 114714067 114714391 -103322767 - L1M4 LINE L1 -2139 4007 3698 1287 211 123 0 chr3 114714391 114714652 -103322506 - AluSx SINE Alu -19 293 1 659 297 34 51 chr3 114714652 114714976 -103322182 - L1M4 LINE L1 -2448 3698 3370 8942 176 23 42 chr3 114715052 114715428 -103321730 - L1PB4 LINE L1 0 6156 5774 378 91 0 0 chr3 114715428 114715483 -103321675 + (CA)n Simple_repeat Simple_repeat 2 56 0 8942 176 23 42 chr3 114715483 114718279 -103318879 - L1PB4 LINE L1 -382 5774 3055 1731 163 23 114 chr3 114718292 114718861 -103318297 + L1MB1 LINE L1 3887 4403 -1743 377 153 42 83 chr3 114718987 114719131 -103318027 + L1MB1 LINE L1 4389 4526 -1620 * 5213 233 28 12 chr3 114719128 114720642 -103316516 - L1P LINE L1 -2086 4060 2523 2203 129 0 0 chr3 114720645 114720954 -103316204 - AluSc SINE Alu 0 309 1 4132 177 20 29 chr3 114720963 114722398 -103314760 + L1MB1 LINE L1 4741 6168 0 38 0 0 0 chr3 114722448 114722486 -103314672 + AT_rich Low_complexity Low_complexity 1 38 0 1796 190 0 0 chr3 114723318 114723613 -103313545 - AluJb SINE Alu -17 295 1 283 279 90 86 chr3 114723891 114724135 -103313023 + L2 LINE L2 2836 3080 -192 228 318 114 23 chr3 114724764 114724896 -103312262 - L2 LINE L2 -222 3050 2907 449 310 66 40 chr3 114724911 114725214 -103311944 - L1M4 LINE L1 -3498 2648 2338 572 270 145 42 chr3 114726247 114726684 -103310474 + MLT1G1 LTR MaLR 1 460 -107 260 262 16 0 chr3 114728057 114728118 -103309040 + MIR SINE MIR 85 146 -62 572 248 85 13 chr3 114728266 114728419 -103308739 + L2 LINE L2 3109 3272 0 292 177 0 48 chr3 114728488 114728550 -103308608 - MER3 DNA MER1_type -150 59 1 1891 152 68 11 chr3 114729647 114730015 -103307143 + MLT1B LTR MaLR 1 389 -1 2143 147 0 0 chr3 114730455 114730767 -103306391 + AluSx SINE Alu 1 312 0 214 303 26 26 chr3 114732515 114732591 -103304567 - MIR SINE MIR -11 251 176 301 256 0 35 chr3 114732593 114732679 -103304479 + L2 LINE L2 2412 2494 -820 239 213 43 0 chr3 114732667 114732714 -103304444 + L2 LINE L2 3224 3272 0 * 232 279 162 0 chr3 114732715 114732826 -103304332 - MIR SINE MIR -86 176 48 509 314 52 18 chr3 114733539 114733768 -103303390 + MIR SINE MIR 14 250 -12 1990 94 98 4 chr3 114735409 114735686 -103301472 - AluSx SINE Alu -9 303 1 1696 132 0 4 chr3 114736804 114737039 -103300119 - AluSx SINE Alu -78 234 1 2473 193 13 4 chr3 114738163 114738629 -103298529 + MER70B LTR ERVL 1 470 -108 2081 148 117 8 chr3 114738629 114739015 -103298143 - MSTA LTR MaLR 0 428 1 2002 107 70 67 chr3 114740449 114740823 -103296335 + THE1C LTR MaLR 1 375 0 302 259 0 25 chr3 114740986 114741067 -103296091 + MLT1F LTR MaLR 2 80 -462 327 174 0 18 chr3 114741099 114741183 -103295975 - Alu SINE Alu -11 291 240 * 529 138 0 0 chr3 114741174 114741267 -103295891 + THE1C LTR MaLR 237 321 -54 2161 102 14 0 chr3 114741671 114741964 -103295194 - AluSg SINE Alu -13 297 1 194 237 0 0 chr3 114741993 114742031 -103295127 - MIR SINE MIR -6 256 219 190 263 0 0 chr3 114741997 114742035 -103295123 - L2 LINE L2 -16 3256 3219 * 377 221 73 52 chr3 114742052 114742188 -103294970 + MIR SINE MIR 69 207 -55 726 261 55 15 chr3 114742962 114743161 -103293997 + MIR SINE MIR 12 218 -44 377 264 23 0 chr3 114744698 114744785 -103292373 + MIR SINE MIR 42 130 -78 452 301 62 51 chr3 114745179 114745509 -103291649 + L1ME LINE L1 5391 5727 -394 1423 138 104 22 chr3 114745509 114745778 -103291380 + AluJb SINE Alu 1 291 -11 452 301 62 51 chr3 114745778 114745802 -103291356 + L1ME LINE L1 5727 5749 -372 266 279 176 22 chr3 114746036 114746172 -103290986 + MIR SINE MIR 33 189 -73 1553 187 32 41 chr3 114746190 114746505 -103290653 + AluJb SINE Alu 1 312 0 354 306 20 0 chr3 114746930 114747028 -103290130 - MIR SINE MIR -78 130 31 2260 97 3 3 chr3 114747579 114747924 -103289234 + AluY SINE Alu 1 345 0 39 22 0 0 chr3 114748052 114748098 -103289060 + AT_rich Low_complexity Low_complexity 1 46 0 237 221 52 52 chr3 114748619 114748696 -103288462 + MIR SINE MIR 110 186 -76 207 231 0 39 chr3 114749207 114749259 -103287899 + MIR SINE MIR 16 65 -143 189 263 203 53 chr3 114750170 114750303 -103286855 - MER5A DNA MER1_type -3 186 34 626 226 161 0 chr3 114750324 114750479 -103286679 + MER5A DNA MER1_type 9 188 -1 548 218 32 96 chr3 114750482 114750670 -103286488 + MER5B DNA MER1_type 2 177 -1 376 257 50 0 chr3 114750860 114750961 -103286197 - MIR SINE MIR -87 175 70 4243 222 78 21 chr3 114751347 114752709 -103284449 - L1ME1 LINE L1 -9 6226 4718 2250 82 0 4 chr3 114752709 114753016 -103284142 - AluY SINE Alu 0 306 1 4243 222 78 21 chr3 114753016 114753671 -103283487 - L1ME1 LINE L1 -1517 4718 4102 388 215 234 0 chr3 114753738 114753845 -103283313 - MER5A DNA MER1_type -1 188 57 723 258 7 63 chr3 114753852 114754018 -103283140 - L1ME1 LINE L1 -2143 4072 3929 1979 136 0 32 chr3 114754018 114754326 -103282832 - AluSx SINE Alu -14 298 1 723 258 7 63 chr3 114754326 114754458 -103282700 - L1ME1 LINE L1 -2286 3929 3791 * 1669 225 21 27 chr3 114754442 114754541 -103282617 + L1M4 LINE L1 4895 4993 -1153 2110 128 3 3 chr3 114754541 114754838 -103282320 + AluSq SINE Alu 1 297 -16 1669 225 21 27 chr3 114754838 114755213 -103281945 + L1M4 LINE L1 4993 5366 -780 781 277 28 43 chr3 114755230 114755512 -103281646 - L1ME1 LINE L1 -6080 316 39 238 192 247 0 chr3 114756136 114756209 -103280949 + L3 LINE CR1 1093 1183 -394 267 261 28 52 chr3 114756334 114756545 -103280613 - L1M4 LINE L1 -3811 2335 2130 387 146 0 0 chr3 114756546 114756601 -103280557 + Tigger3b DNA MER2_type 2 56 -1175 1202 158 222 7 chr3 114756800 114757097 -103280061 + MER46B DNA MER2_type 1 236 0 2642 259 74 65 chr3 114757285 114758708 -103278450 + L1MEc LINE L1 36 1471 -4925 228 67 0 0 chr3 114759451 114759481 -103277677 - U6 snRNA snRNA -77 30 1 325 324 101 14 chr3 114760742 114760881 -103276277 + MIR SINE MIR 56 206 -56 270 81 0 0 chr3 114761174 114761211 -103275947 + (TG)n Simple_repeat Simple_repeat 2 38 0 2360 83 0 0 chr3 114761211 114761499 -103275659 - AluSq SINE Alu -25 288 1 252 0 0 0 chr3 114761507 114761535 -103275623 + (TTG)n Simple_repeat Simple_repeat 3 30 0 228 261 101 59 chr3 114761719 114761838 -103275320 - L2 LINE L2 -1330 1984 1861 21 0 0 0 chr3 114762893 114762914 -103274244 + AT_rich Low_complexity Low_complexity 1 21 0 2332 88 3 3 chr3 114762994 114763291 -103273867 + AluSq SINE Alu 1 297 -16 453 280 154 6 chr3 114763409 114763591 -103273567 + MIR SINE MIR 48 256 -6 399 317 33 0 chr3 114765390 114765510 -103271648 + MER5A DNA MER1_type 3 126 -63 723 278 32 45 chr3 114766857 114767111 -103270047 - MIR SINE MIR -1 261 10 329 312 45 26 chr3 114767188 114767342 -103269816 - MIR SINE MIR -17 245 89 543 279 48 12 chr3 114767399 114767564 -103269594 - MIR SINE MIR -70 192 22 24 32 0 0 chr3 114768594 114768625 -103268533 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr3 114768741 114768769 -103268389 + AT_rich Low_complexity Low_complexity 1 28 0 2598 68 0 0 chr3 114768816 114769127 -103268031 - AluY SINE Alu 0 311 1 30 27 0 0 chr3 114769150 114769187 -103267971 + AT_rich Low_complexity Low_complexity 1 37 0 655 108 10 0 chr3 114769267 114769369 -103267789 + AluY SINE Alu 195 297 -14 241 340 100 0 chr3 114769388 114769488 -103267670 + MIR3 SINE MIR 89 198 -10 1034 263 158 66 chr3 114769664 114770132 -103267026 - L2 LINE L2 -1059 2255 1717 2274 117 0 0 chr3 114770132 114770439 -103266719 - AluSc SINE Alu -2 307 1 1034 263 158 66 chr3 114770439 114770578 -103266580 - L2 LINE L2 -1597 1717 1592 2964 206 43 0 chr3 114772516 114773068 -103264090 + MER70B LTR ERVL 1 576 -2 218 236 182 0 chr3 114773070 114773125 -103264033 + L2 LINE L2 3208 3272 0 230 227 0 0 chr3 114773602 114773646 -103263512 + GA-rich Low_complexity Low_complexity 2 45 0 2292 100 3 0 chr3 114774051 114774350 -103262808 + AluSx SINE Alu 1 300 -12 1983 134 134 28 chr3 114774436 114774823 -103262335 + MSTA LTR MaLR 1 428 0 419 287 150 25 chr3 114774839 114775125 -103262033 + LTR16B LTR ERVL 143 464 0 438 304 55 20 chr3 114775195 114775396 -103261762 + L2 LINE L2 2497 2704 -610 1749 177 62 6 chr3 114775778 114776117 -103261041 + MLT1A1 LTR MaLR 7 364 -1 381 275 158 17 chr3 114776255 114776375 -103260783 + L2 LINE L2 3136 3272 0 240 275 9 101 chr3 114776879 114776988 -103260170 - Charlie8 DNA MER1_type -2275 142 44 327 298 25 56 chr3 114778267 114778428 -103258730 + MIR3 SINE MIR 38 193 -15 1342 161 21 8 chr3 114778777 114779013 -103258145 - MER66A LTR ERV1 -239 239 1 398 277 43 35 chr3 114779519 114779660 -103257498 - L2 LINE L2 -4 3309 3168 401 138 12 0 chr3 114780579 114780659 -103256499 + CT-rich Low_complexity Low_complexity 1 81 0 6028 130 48 27 chr3 114780671 114781391 -103255767 + Tigger3b DNA MER2_type 129 881 -2147 2582 36 3 0 chr3 114781391 114781693 -103255465 - AluY SINE Alu -8 303 1 6028 130 48 27 chr3 114781693 114782052 -103255106 + Tigger3b DNA MER2_type 881 1231 0 35 24 0 0 chr3 114782181 114782223 -103254935 + AT_rich Low_complexity Low_complexity 1 42 0 2252 105 0 7 chr3 114782693 114782997 -103254161 - AluSq SINE Alu -11 302 1 3846 175 60 16 chr3 114784627 114785484 -103251674 + MER97a DNA MER1_type 1 894 0 1395 299 110 44 chr3 114785741 114786184 -103250974 + L2 LINE L2 2214 2626 -687 1615 173 27 30 chr3 114786184 114786484 -103250674 + AluJo SINE Alu 1 299 -13 1395 299 110 44 chr3 114786484 114786924 -103250234 + L2 LINE L2 2626 3155 -158 252 214 0 0 chr3 114786924 114786980 -103250178 + (CATA)n Simple_repeat Simple_repeat 1 56 0 321 315 0 0 chr3 114787000 114787089 -103250069 + L1MC4 LINE L1 6614 6702 -1340 305 156 13 78 chr3 114787040 114787117 -103250041 - L1MCa LINE L1 -4363 2063 1992 * 220 302 208 0 chr3 114787133 114787239 -103249919 + L2 LINE L2 3137 3264 -8 1438 212 52 0 chr3 114787546 114787844 -103249314 - AluJo SINE Alu 0 312 1 1222 229 53 9 chr3 114787964 114788283 -103248875 + MER46C DNA MER2_type 2 334 -4 231 271 151 71 chr3 114788327 114788552 -103248606 + MLT1L LTR MaLR 207 449 -166 467 299 24 0 chr3 114789701 114789828 -103247330 - MIR SINE MIR -13 249 120 558 239 33 56 chr3 114790372 114790552 -103246606 + MER69A DNA AcHobo 2 177 0 216 86 0 0 chr3 114791083 114791118 -103246040 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 26470 20 1 0 chr3 114791122 114795029 -103242129 - L1HS LINE L1 0 6155 2246 2102 98 46 0 chr3 114795353 114795520 -103241638 - AluSc SINE Alu -11 298 111 186 71 0 0 chr3 114795520 114795548 -103241610 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2102 98 46 0 chr3 114795548 114795665 -103241493 - AluSc SINE Alu -198 111 1 657 0 45 0 chr3 114796610 114796698 -103240460 + (TCTA)n Simple_repeat Simple_repeat 1 92 0 317 337 61 12 chr3 114798164 114798327 -103238831 + MIR SINE MIR 36 206 -56 2127 85 11 7 chr3 114798799 114799121 -103238037 + AluSc SINE Alu 1 323 0 297 0 0 0 chr3 114800527 114800560 -103236598 + (TG)n Simple_repeat Simple_repeat 2 34 0 421 315 49 12 chr3 114800560 114800722 -103236436 - MIR SINE MIR -77 185 18 192 40 0 0 chr3 114800918 114800943 -103236215 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1970 115 0 0 chr3 114800944 114801204 -103235954 - AluSx SINE Alu -32 280 21 201 434 0 12 chr3 114802133 114802216 -103234942 + MIR SINE MIR 30 111 -97 1965 158 0 10 chr3 114802517 114802821 -103234337 + AluJo SINE Alu 1 301 -11 3069 137 33 27 chr3 114804263 114804742 -103232416 - Tigger3b DNA MER2_type -2512 516 41 279 0 0 0 chr3 114804742 114804773 -103232385 + (TG)n Simple_repeat Simple_repeat 2 32 0 2190 109 0 0 chr3 114804773 114805058 -103232100 - AluSx SINE Alu -27 285 1 3069 137 33 27 chr3 114805058 114805090 -103232068 - Tigger3b DNA MER2_type -2986 42 1 183 80 0 0 chr3 114805110 114805135 -103232023 + (TATAA)n Simple_repeat Simple_repeat 5 29 0 21 36 0 0 chr3 114806731 114806759 -103230399 + AT_rich Low_complexity Low_complexity 1 28 0 390 42 0 0 chr3 114806938 114806986 -103230172 + (CA)n Simple_repeat Simple_repeat 2 49 0 24 0 0 0 chr3 114809191 114809215 -103227943 + AT_rich Low_complexity Low_complexity 1 24 0 225 319 164 0 chr3 114811649 114811765 -103225393 - MER5A DNA MER1_type 0 189 55 198 256 105 47 chr3 114811703 114811789 -103225369 + MER5A DNA MER1_type 84 174 -15 * 244 250 92 0 chr3 114812121 114812197 -103224961 - MIR3 SINE MIR 0 208 126 231 242 33 22 chr3 114812395 114812486 -103224672 - MER103 DNA DNA -74 92 1 510 103 0 0 chr3 114814111 114814189 -103222969 + (TA)n Simple_repeat Simple_repeat 1 78 0 396 0 0 0 chr3 114814188 114814232 -103222926 + (GA)n Simple_repeat Simple_repeat 2 45 0 * 1164 264 54 83 chr3 114815217 114815736 -103221422 - LTR33 LTR ERVL -1 520 17 374 221 7 66 chr3 114816087 114816223 -103220935 + L1MC4 LINE L1 7914 8041 -1 287 267 0 0 chr3 114816230 114816290 -103220868 + MIR SINE MIR 195 254 -8 1238 228 17 56 chr3 114816301 114816709 -103220449 + L1M4 LINE L1 3643 4034 -2112 27 0 0 0 chr3 114816853 114816880 -103220278 + AT_rich Low_complexity Low_complexity 1 27 0 830 192 0 0 chr3 114817150 114817301 -103219857 + FRAM SINE Alu 14 164 -12 222 116 0 0 chr3 114817392 114817435 -103219723 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 5317 36 23 1 chr3 114817437 114818129 -103219029 - L1PA4 LINE L1 -8 6147 5441 865 241 42 71 chr3 114818247 114818654 -103218504 + L1MC4 LINE L1 7604 7998 -44 609 209 16 0 chr3 114818730 114818859 -103218299 - AluJb SINE Alu -181 131 1 340 326 76 39 chr3 114818929 114819312 -103217846 + L1M4 LINE L1 3100 3496 -2650 22 70 0 0 chr3 114819514 114819557 -103217601 + AT_rich Low_complexity Low_complexity 1 43 0 282 297 99 42 chr3 114819578 114819790 -103217368 + L1M4b LINE L1 12 235 -6624 1498 263 26 53 chr3 114820341 114821074 -103216084 + L1M4b LINE L1 1269 1985 -4870 618 285 44 60 chr3 114821076 114821508 -103215650 + L1M4b LINE L1 2388 2812 -4326 833 201 0 0 chr3 114821540 114821694 -103215464 + FRAM SINE Alu 1 153 -23 324 181 0 0 chr3 114821736 114821819 -103215339 + L1M4b LINE L1 2846 2928 -4031 2139 127 26 6 chr3 114821831 114822171 -103214987 - MER7A DNA MER2_type 0 346 2 562 163 20 0 chr3 114822180 114822278 -103214880 + MSTA LTR MaLR 1 100 -328 2804 237 109 20 chr3 114822380 114822811 -103214347 + L1M4b LINE L1 3039 3430 -3527 2264 95 0 23 chr3 114822811 114823116 -103214042 + AluSc SINE Alu 3 300 -9 2804 237 109 20 chr3 114823116 114823853 -103213305 + L1M4b LINE L1 3430 4311 -2646 627 294 11 11 chr3 114824047 114824227 -103212931 - LTR16A LTR ERVL -270 180 1 2320 101 0 0 chr3 114824414 114824721 -103212437 - AluSc SINE Alu -2 307 1 2328 77 3 0 chr3 114824875 114825174 -103211984 - AluY SINE Alu -11 300 1 184 218 128 51 chr3 114826162 114826240 -103210918 - L2 LINE L2 -2 3311 3228 2638 190 31 13 chr3 114826367 114826909 -103210249 - MER74A LTR ERVL -3 555 4 25 31 0 0 chr3 114828599 114828631 -103208527 + AT_rich Low_complexity Low_complexity 1 32 0 229 229 0 0 chr3 114828885 114828933 -103208225 + L1ME1 LINE L1 5989 6036 -130 1008 274 24 11 chr3 114829003 114829372 -103207786 + L1MC4 LINE L1 7036 7409 -633 3772 132 13 3 chr3 114880147 114880744 -103156414 + L1M1 LINE L1 1756 2358 -5207 1333 116 0 14 chr3 114880731 114880946 -103156212 - L1MA3 LINE L1 -278 6027 5816 * 693 147 0 0 chr3 114880948 114881050 -103156108 - FLAM_C SINE Alu -12 131 30 2553 94 8 16 chr3 114881052 114881433 -103155725 - L1MA3 LINE L1 -474 5830 5453 514 172 83 7 chr3 114881500 114881645 -103155513 + L1MA3 LINE L1 6100 6255 -50 879 246 131 11 chr3 114881765 114882257 -103154901 - L1ME LINE L1 -439 5723 5177 407 297 0 26 chr3 114882279 114882434 -103154724 - L1ME LINE L1 -1033 5113 4963 2023 251 78 1 chr3 114883084 114883765 -103153393 + L1ME LINE L1 3636 4368 -1778 1417 234 66 19 chr3 114883824 114884311 -103152847 + L1ME LINE L1 4762 5271 -875 648 276 206 0 chr3 114884355 114884710 -103152448 + L1ME LINE L1 5337 5764 -406 249 225 0 0 chr3 114884928 114884968 -103152190 + MER7C DNA MER2_type 2 41 -561 1428 110 17 0 chr3 114885137 114885373 -103151785 - L1MA8 LINE L1 -3 6288 6049 3542 142 47 24 chr3 114885374 114885497 -103151661 - L1MA8 LINE L1 -369 5943 5824 1934 169 0 0 chr3 114885497 114885798 -103151360 - AluJo SINE Alu -11 301 1 3542 142 47 24 chr3 114885798 114886410 -103150748 - L1MA8 LINE L1 -488 5824 5197 34259 48 5 3 chr3 114887008 114891309 -103145849 - L1P LINE L1 -1836 4310 1 417 262 159 1 chr3 114891344 114891488 -103145670 - MIR SINE MIR -65 143 34 204 183 34 92 chr3 114891515 114891633 -103145525 + L2 LINE L2 3174 3272 0 22 35 0 0 chr3 114891945 114891974 -103145184 + AT_rich Low_complexity Low_complexity 1 29 0 3743 259 82 85 chr3 114892192 114894364 -103142794 - L1MDa LINE L1 -4369 2171 7 187 176 0 0 chr3 114894465 114894499 -103142659 + L2 LINE L2 3273 3306 -7 2389 83 3 0 chr3 114894745 114895047 -103142111 - AluSp SINE Alu -10 303 1 7477 35 2 2 chr3 114896673 114898363 -103138795 - L1PA4 LINE L1 0 6155 4466 342 286 71 7 chr3 114898814 114898954 -103138204 - MER103 DNA DNA -3 163 15 249 33 0 0 chr3 114899296 114899326 -103137832 + (TA)n Simple_repeat Simple_repeat 1 30 0 2942 147 99 13 chr3 114899842 114900395 -103136763 - MER7C DNA MER2_type 0 602 2 294 233 86 67 chr3 114900442 114900652 -103136506 + L1MC5 LINE L1 7717 7930 -31 180 0 0 0 chr3 114900773 114900793 -103136365 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 313 317 37 12 chr3 114901121 114901282 -103135876 - L1MA10 LINE L1 0 6334 6170 1169 229 57 30 chr3 114901290 114901622 -103135536 - L1ME1 LINE L1 -141 6025 5685 193 68 45 23 chr3 114902125 114902169 -103134989 + T-rich Low_complexity Low_complexity 4 48 0 584 262 92 71 chr3 114902772 114903237 -103133921 - L1ME4a LINE L1 -128 5993 5519 2158 121 0 3 chr3 114904176 114904489 -103132669 + AluSx SINE Alu 1 312 0 547 81 0 0 chr3 114904950 114905024 -103132134 - Tigger3(Golem) DNA MER2_type -93 2936 2863 22 0 0 0 chr3 114905352 114905374 -103131784 + AT_rich Low_complexity Low_complexity 1 22 0 550 239 61 72 chr3 114905489 114905752 -103131406 + MER112 DNA MER1_type 1 260 0 22 0 0 0 chr3 114907638 114907660 -103129498 + AT_rich Low_complexity Low_complexity 1 22 0 198 296 56 0 chr3 114908191 114908245 -103128913 + L2 LINE L2 3213 3269 -3 26 74 0 0 chr3 114909168 114909222 -103127936 + AT_rich Low_complexity Low_complexity 1 54 0 2222 99 0 3 chr3 114909494 114909786 -103127372 - AluSc SINE Alu -18 291 1 315 364 175 23 chr3 114911248 114911556 -103125602 + L2 LINE L2 2918 3272 0 617 197 43 0 chr3 114912638 114912755 -103124403 + MER3 DNA MER1_type 88 209 0 433 181 0 21 chr3 114912795 114912889 -103124269 + MER5A DNA MER1_type 9 100 -89 271 210 0 120 chr3 114914516 114914616 -103122542 + L2 LINE L2 3189 3276 -37 775 296 41 10 chr3 114914625 114914968 -103122190 + L1ME3 LINE L1 5470 5830 -332 826 209 78 13 chr3 114915072 114915302 -103121856 + L1MEc LINE L1 1878 2122 -4274 1966 230 142 35 chr3 114915303 114915607 -103121551 + L1MEc LINE L1 2179 2449 -3766 2277 98 0 3 chr3 114915607 114915903 -103121255 + AluSc SINE Alu 1 295 -14 1966 230 142 35 chr3 114915903 114916725 -103120433 + L1MEc LINE L1 2449 3386 -2829 1058 236 99 16 chr3 114916724 114917038 -103120120 + L1ME LINE L1 257 596 -5474 * 547 231 41 8 chr3 114917042 114917163 -103119995 - L2 LINE L2 -18 3295 3171 385 374 78 40 chr3 114917352 114917726 -103119432 - L2 LINE L2 -400 2914 2527 2266 81 0 7 chr3 114917735 114918047 -103119111 + AluY SINE Alu 1 310 0 502 331 0 6 chr3 114918079 114918242 -103118916 - L2 LINE L2 -930 2384 2223 24 53 0 0 chr3 114919767 114919805 -103117353 + AT_rich Low_complexity Low_complexity 1 38 0 481 344 17 0 chr3 114920329 114920509 -103116649 - MIR SINE MIR -75 187 5 229 158 44 61 chr3 114920667 114920781 -103116377 + (TATAA)n Simple_repeat Simple_repeat 5 116 0 * 382 199 41 27 chr3 114920702 114920917 -103116241 + (TA)n Simple_repeat Simple_repeat 1 217 0 52 50 0 0 chr3 114923467 114923547 -103113611 + AT_rich Low_complexity Low_complexity 1 80 0 756 239 0 12 chr3 114924222 114924385 -103112773 + AluJo SINE Alu 122 282 -30 210 71 0 0 chr3 114924388 114924416 -103112742 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 457 232 99 34 chr3 114924613 114924956 -103112202 + HAL1 LINE L1 1111 1556 -951 1384 145 7 91 chr3 114924960 114925061 -103112097 + AluJo SINE Alu 42 150 -162 216 0 0 0 chr3 114925061 114925085 -103112073 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1384 145 7 91 chr3 114925085 114925259 -103111899 + AluJo SINE Alu 150 294 -18 893 234 27 43 chr3 114925261 114925518 -103111640 + HAL1 LINE L1 1586 1838 -669 218 191 0 0 chr3 114925810 114925852 -103111306 + GA-rich Low_complexity Low_complexity 1 42 0 573 15 0 0 chr3 114925852 114925918 -103111240 + (TG)n Simple_repeat Simple_repeat 2 67 0 247 262 133 47 chr3 114925919 114926175 -103110983 + HAL1 LINE L1 2230 2507 0 759 267 9 13 chr3 114926371 114926603 -103110555 - L1M4 LINE L1 -3560 2586 2356 334 237 0 35 chr3 114926608 114926722 -103110436 + L1M4 LINE L1 2248 2357 -3789 399 299 142 15 chr3 114926737 114927052 -103110106 + L1ME4a LINE L1 5454 5807 -314 30 27 0 0 chr3 114927086 114927123 -103110035 + AT_rich Low_complexity Low_complexity 1 37 0 255 264 47 31 chr3 114927307 114927436 -103109722 + L1ME4a LINE L1 5974 6104 -17 434 324 64 35 chr3 114927969 114928312 -103108846 + HERV16 LTR ERVL 117 469 -4527 2281 89 0 0 chr3 114928749 114929040 -103108118 + AluSc SINE Alu 1 291 -18 346 327 59 63 chr3 114929341 114929595 -103107563 + HERV16 LTR ERVL 1193 1445 -4319 546 277 45 23 chr3 114929643 114929863 -103107295 + HERV16 LTR ERVL 2528 2752 -2733 507 295 71 96 chr3 114930031 114930312 -103106846 + L2 LINE L2 2999 3272 0 310 337 72 44 chr3 114930559 114930740 -103106418 - MIR SINE MIR -75 187 2 25 0 0 0 chr3 114931253 114931278 -103105880 + AT_rich Low_complexity Low_complexity 1 25 0 606 217 9 0 chr3 114931358 114931473 -103105685 + FLAM_A SINE Alu 5 120 -13 21 0 0 0 chr3 114931909 114931930 -103105228 + AT_rich Low_complexity Low_complexity 1 21 0 6518 162 66 6 chr3 114932716 114933854 -103103304 + L1M1 LINE L1 22 1227 -6338 543 218 48 20 chr3 114934061 114934208 -103102950 + L1MD2 LINE L1 5983 6133 -226 2235 223 43 31 chr3 114934216 114934771 -103102387 + MER68 LTR ERV1 1 562 0 280 211 9 101 chr3 114934779 114934888 -103102270 + L1MD2 LINE L1 6196 6294 -65 1736 194 101 5 chr3 114934898 114935315 -103101843 + MLT2B1 LTR ERVL 1 457 -63 187 106 64 0 chr3 114935336 114935383 -103101775 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 396 88 0 0 chr3 114935391 114935448 -103101710 + (CA)n Simple_repeat Simple_repeat 2 58 0 2401 94 0 0 chr3 114935626 114935934 -103101224 - AluSg SINE Alu -2 308 1 447 246 337 0 chr3 114936167 114936354 -103100804 + MIR SINE MIR 13 262 0 2273 146 33 12 chr3 114937312 114937737 -103099421 - L1MA8 LINE L1 0 6291 5858 2212 95 0 0 chr3 114938406 114938720 -103098438 - AluY SINE Alu 0 314 1 443 301 239 0 chr3 114939104 114939330 -103097828 + L2 LINE L2 2001 2280 -1034 1050 288 50 48 chr3 114939703 114940186 -103096972 - LTR16C LTR ERVL -7 484 1 1538 258 90 18 chr3 114940383 114941184 -103095974 - L1M4 LINE L1 -2799 3347 2489 465 286 98 62 chr3 114941208 114941565 -103095593 - L1M4 LINE L1 -1299 4847 4478 284 305 34 34 chr3 114941616 114941734 -103095424 - MER5A DNA MER1_type -3 186 69 1309 213 57 27 chr3 114941838 114942172 -103094986 - MER2 DNA MER2_type 0 344 1 2159 115 7 0 chr3 114942726 114943021 -103094137 - AluSx SINE Alu -15 297 1 231 222 19 74 chr3 114944553 114944661 -103092497 + L1MC4 LINE L1 7935 8036 -6 1650 192 0 14 chr3 114944867 114945148 -103092010 - AluJb SINE Alu -33 279 3 2126 147 81 8 chr3 114945501 114945883 -103091275 + MSTA LTR MaLR 19 428 0 341 366 59 13 chr3 114947793 114947946 -103089212 + MER5B DNA MER1_type 1 160 -18 402 212 68 34 chr3 114948511 114948629 -103088529 + MIR SINE MIR 116 237 -25 2272 128 12 18 chr3 114948924 114949260 -103087898 + MER1B DNA MER1_type 3 336 -3 611 314 71 12 chr3 114949555 114949970 -103087188 - L1ME4a LINE L1 -180 5941 5490 1863 179 140 10 chr3 114952613 114953021 -103084137 - LOR1b LTR ERV1 0 461 1 537 252 22 7 chr3 114953290 114953425 -103083733 - MER20 DNA MER1_type 0 219 83 397 171 122 81 chr3 114953706 114953829 -103083329 + MIR SINE MIR 125 252 -10 210 143 0 0 chr3 114953832 114953867 -103083291 + (CAT)n Simple_repeat Simple_repeat 2 36 0 291 220 280 17 chr3 114954008 114954126 -103083032 - L1MC4a LINE L1 -1884 5924 5776 1491 184 99 15 chr3 114954584 114954916 -103082242 - MLT1A1 LTR MaLR 0 365 6 275 304 184 13 chr3 114956115 114956273 -103080885 - MIR SINE MIR -29 233 49 289 206 10 62 chr3 114956618 114956715 -103080443 - Charlie7 DNA MER1_type -6 2606 2515 364 286 9 29 chr3 114956743 114956848 -103080310 - Charlie7 DNA MER1_type -2509 103 1 393 225 171 27 chr3 114957703 114957814 -103079344 + L2 LINE L2 3186 3312 -1 511 244 240 12 chr3 114958012 114958262 -103078896 + L2 LINE L2 2069 2375 -939 228 254 9 109 chr3 114958283 114958393 -103078765 + MLT1H LTR MaLR 428 526 -23 542 299 47 31 chr3 114958416 114958670 -103078488 + L2 LINE L2 3055 3312 -1 1721 164 14 4 chr3 114959016 114959291 -103077867 + AluJo SINE Alu 5 282 -30 207 0 0 0 chr3 114959299 114959322 -103077836 + (CAA)n Simple_repeat Simple_repeat 2 24 0 182 161 0 0 chr3 114959491 114959522 -103077636 + L2 LINE L2 3281 3311 -2 833 181 120 19 chr3 114959805 114960021 -103077137 + L1MC2 LINE L1 5993 6230 -114 353 261 149 18 chr3 114960297 114960519 -103076639 - L1MC4a LINE L1 -1883 5925 5675 375 289 70 63 chr3 114960653 114960954 -103076204 - L1ME4a LINE L1 -761 5385 5083 365 279 41 101 chr3 114961465 114961684 -103075474 - L1ME4a LINE L1 -2065 4081 3876 1258 266 76 19 chr3 114961695 114962063 -103075095 - MLT1I LTR MaLR -2 407 19 397 339 89 41 chr3 114962125 114962709 -103074449 - L1ME4a LINE L1 -2353 3793 3182 330 190 112 89 chr3 114962817 114962996 -103074162 - L1ME3A LINE L1 -123 6047 5865 544 270 159 37 chr3 114963011 114963068 -103074090 - L1M4 LINE L1 -1780 4366 4317 2161 173 25 20 chr3 114963068 114963462 -103073696 + MSTD LTR MaLR 1 396 0 544 270 159 37 chr3 114963462 114963812 -103073346 - L1M4 LINE L1 -1829 4317 3909 803 266 105 36 chr3 114963845 114964179 -103072979 + ERVL LTR ERVL 4845 5201 -563 1098 211 88 85 chr3 114964489 114964853 -103072305 - MLT1A1 LTR MaLR 0 365 1 1906 145 11 0 chr3 114965919 114966228 -103070930 - AluSx SINE Alu 0 312 1 927 206 20 75 chr3 114966560 114966640 -103070518 - MER5A DNA MER1_type -1 188 105 2140 179 6 3 chr3 114966640 114967004 -103070154 + MLT1A1 LTR MaLR 1 365 0 927 206 20 75 chr3 114967004 114967122 -103070036 - MER5A DNA MER1_type -84 105 1 1596 163 7 54 chr3 114967326 114967620 -103069538 - AluJb SINE Alu -23 289 10 299 380 44 38 chr3 114968778 114968936 -103068222 - MIR3 SINE MIR -49 159 1 21 71 0 0 chr3 114969075 114969117 -103068041 + AT_rich Low_complexity Low_complexity 1 42 0 1834 215 35 83 chr3 114969520 114970064 -103067094 - MLT2B1 LTR ERVL -2 518 1 201 220 34 17 chr3 114970285 114970344 -103066814 + MIR SINE MIR 84 143 -119 1676 84 13 9 chr3 114970381 114970660 -103066498 - AluY SINE Alu 0 334 55 23 0 0 0 chr3 114970966 114970989 -103066169 + AT_rich Low_complexity Low_complexity 1 23 0 3248 239 67 31 chr3 114971272 114971468 -103065690 - L1MEc LINE L1 -5391 1005 818 2424 134 50 2 chr3 114971468 114971872 -103065286 - L1MC1 LINE L1 -18 6315 5893 3248 239 67 31 chr3 114971872 114972612 -103064546 - L1MEc LINE L1 -5578 818 35 194 157 129 71 chr3 114973251 114973321 -103063837 - L3b LINE CR1 -235 1348 1275 565 292 18 23 chr3 114973402 114973573 -103063585 + MIR SINE MIR 10 179 -83 602 317 85 5 chr3 114973953 114974038 -103063120 - MIR SINE MIR -13 249 172 822 221 136 39 chr3 114974038 114974369 -103062789 + MLT1A1 LTR MaLR 1 363 -2 602 317 85 5 chr3 114974369 114974507 -103062651 - MIR SINE MIR -90 172 8 23 0 0 0 chr3 114974667 114974690 -103062468 + AT_rich Low_complexity Low_complexity 1 23 0 999 180 38 6 chr3 114975007 114975190 -103061968 + MER5A DNA MER1_type 1 189 0 204 292 77 0 chr3 114975645 114975710 -103061448 + L2 LINE L2 3133 3202 -70 1068 248 78 73 chr3 114977046 114977497 -103059661 + MLT1J LTR MaLR 26 478 -33 21 0 0 0 chr3 114977725 114977746 -103059412 + AT_rich Low_complexity Low_complexity 1 21 0 864 274 76 55 chr3 114977763 114978453 -103058705 + L1ME4a LINE L1 5262 5963 -158 21 36 0 0 chr3 114978662 114978690 -103058468 + AT_rich Low_complexity Low_complexity 1 28 0 329 164 0 14 chr3 114978762 114978835 -103058323 - L1MA7 LINE L1 0 6291 6220 573 297 127 9 chr3 114981131 114981360 -103055798 + MIR SINE MIR 5 260 -2 198 333 42 42 chr3 114982688 114982832 -103054326 + MIR3 SINE MIR 57 200 -8 273 170 19 0 chr3 114983138 114983191 -103053967 + MIR SINE MIR 3 56 -206 455 326 119 39 chr3 114983265 114983987 -103053171 - L2 LINE L2 -85 3187 2404 342 344 47 0 chr3 114983978 114984106 -103053052 + MIR SINE MIR 110 243 -19 * 1126 82 0 0 chr3 114984442 114984577 -103052581 + AluSq/x SINE Alu 1 135 -178 2004 134 7 0 chr3 114984577 114984868 -103052290 + AluSq SINE Alu 1 293 -20 206 323 0 0 chr3 114985173 114985235 -103051923 - MIR SINE MIR 0 262 201 21 57 0 0 chr3 114985885 114985920 -103051238 + AT_rich Low_complexity Low_complexity 1 35 0 264 333 33 0 chr3 114985920 114986010 -103051148 - L2 LINE L2 -796 2518 2426 247 295 126 0 chr3 114986344 114986439 -103050719 + L2 LINE L2 3203 3309 -4 648 198 0 0 chr3 114986603 114986714 -103050444 - MER81 DNA DNA 0 114 4 434 234 0 88 chr3 114987196 114987333 -103049825 - MER94 DNA DNA 0 134 10 266 322 59 23 chr3 114988846 114988987 -103048171 - MIR3 SINE MIR -47 161 15 1084 197 48 26 chr3 114989847 114990116 -103047042 + ORSL DNA AcHobo 1 275 0 383 289 18 54 chr3 114991813 114991979 -103045179 + MIR SINE MIR 47 206 -56 491 238 54 0 chr3 114992186 114992333 -103044825 + L1ME4a LINE L1 5963 6117 -4 274 311 89 37 chr3 114992374 114992509 -103044649 - MIR3 SINE MIR -63 145 4 333 257 68 74 chr3 114992737 114992885 -103044273 + MIR3 SINE MIR 3 149 -59 1786 163 15 9 chr3 114993249 114993574 -103043584 + L1PA13 LINE L1 5804 6130 -33 228 286 0 0 chr3 114993600 114993656 -103043502 + GA-rich Low_complexity Low_complexity 1 56 0 228 260 149 8 chr3 114993707 114993942 -103043216 + L1M4 LINE L1 3071 3338 -2808 1687 157 48 3 chr3 114994082 114994375 -103042783 + AluJb SINE Alu 4 309 -3 853 239 37 0 chr3 114994675 114994863 -103042295 + MIR SINE MIR 68 262 0 21 57 0 0 chr3 114994898 114994933 -103042225 + AT_rich Low_complexity Low_complexity 1 35 0 1820 144 3 39 chr3 114995318 114995630 -103041528 - AluJb SINE Alu -10 302 2 288 372 96 13 chr3 114995664 114995965 -103041193 + L2 LINE L2 2416 2741 -573 1576 156 71 3 chr3 114996045 114996327 -103040831 - AluJb SINE Alu -11 301 1 811 280 163 26 chr3 114996778 114997196 -103039962 + L2 LINE L2 2834 3308 -5 267 305 170 7 chr3 114997194 114997335 -103039823 - MIR SINE MIR -86 176 13 * 242 319 143 0 chr3 114997394 114997513 -103039645 + L2 LINE L2 3136 3271 -1 23 33 0 0 chr3 114999522 114999552 -103037606 + AT_rich Low_complexity Low_complexity 1 30 0 2024 106 17 3 chr3 114999970 115000263 -103036895 + AluSx SINE Alu 6 302 -10 270 214 51 41 chr3 115000396 115000494 -103036664 - L1ME3 LINE L1 0 6162 6064 1493 231 69 29 chr3 115000519 115001038 -103036120 - L1ME3 LINE L1 -89 6073 5458 724 221 28 0 chr3 115001343 115001488 -103035670 + MIR SINE MIR 114 262 0 255 152 0 0 chr3 115002122 115002168 -103034990 + (TG)n Simple_repeat Simple_repeat 1 46 0 245 304 37 110 chr3 115002561 115002752 -103034406 - L2 LINE L2 -199 3073 2897 968 196 55 5 chr3 115003374 115003573 -103033585 + MER3 DNA MER1_type 1 209 0 586 297 100 10 chr3 115003776 115004066 -103033092 - L1ME LINE L1 -297 5824 5509 2772 109 51 68 chr3 115004133 115004665 -103032493 - L1MA4A LINE L1 -4 6299 5777 240 189 451 0 chr3 115005462 115005584 -103031574 - MER104 DNA Tc2 -1 179 3 2060 106 10 7 chr3 115007276 115007569 -103029589 + AluSc SINE Alu 1 294 -15 387 0 0 0 chr3 115007727 115007770 -103029388 + (TG)n Simple_repeat Simple_repeat 2 44 0 26 50 0 0 chr3 115008472 115008512 -103028646 + AT_rich Low_complexity Low_complexity 1 40 0 24 53 0 0 chr3 115009269 115009307 -103027851 + AT_rich Low_complexity Low_complexity 1 38 0 199 222 16 79 chr3 115009601 115009664 -103027494 - L2 LINE L2 -15 3257 3199 2056 109 3 7 chr3 115010286 115010591 -103026567 - AluSx SINE Alu 0 304 1 188 333 133 0 chr3 115010924 115011029 -103026129 + L2 LINE L2 2734 2852 -462 502 265 75 27 chr3 115012011 115012158 -103025000 - L1ME3A LINE L1 -30 6140 5987 268 253 46 0 chr3 115012229 115012316 -103024842 + L1MC4 LINE L1 6614 6704 -1338 429 302 0 0 chr3 115012317 115012496 -103024662 + (TA)n Simple_repeat Simple_repeat 2 180 0 231 274 48 0 chr3 115012523 115012607 -103024551 + L1MC4 LINE L1 6614 6701 -1341 * 241 303 0 0 chr3 115012582 115012671 -103024487 - L1MC4 LINE L1 -1340 6702 6614 227 284 23 0 chr3 115012607 115012695 -103024463 + L1MC4 LINE L1 6614 6703 -1339 * 246 294 47 0 chr3 115012689 115012774 -103024384 - L1MC4 LINE L1 -1339 6703 6615 221 311 0 16 chr3 115012777 115012838 -103024320 + (TG)n Simple_repeat Simple_repeat 2 61 0 308 248 80 18 chr3 115012853 115012966 -103024192 - L1ME3A LINE L1 -230 5940 5821 4539 121 122 6 chr3 115013664 115014508 -103022650 + Tigger3b DNA MER2_type 290 1231 0 426 39 0 0 chr3 115015724 115015776 -103021382 + (TA)n Simple_repeat Simple_repeat 1 52 0 198 212 0 0 chr3 115015954 115015987 -103021171 - L2 LINE L2 -40 3232 3200 29 0 0 0 chr3 115016465 115016494 -103020664 + AT_rich Low_complexity Low_complexity 1 29 0 427 196 9 218 chr3 115017637 115017862 -103019296 - MER5B DNA MER1_type 0 178 1 180 135 0 0 chr3 115018648 115018685 -103018473 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 1318 211 191 5 chr3 115020076 115020494 -103016664 - LTR54B LTR ERV1 -2 496 1 362 338 32 0 chr3 115020635 115020758 -103016400 + MIR SINE MIR 26 152 -65 1176 146 35 62 chr3 115020962 115021188 -103015970 + MER46A DNA MER2_type 1 220 -16 22 80 0 0 chr3 115021270 115021320 -103015838 + AT_rich Low_complexity Low_complexity 1 50 0 300 313 37 7 chr3 115021965 115022204 -103014954 - MLT1K LTR MaLR -76 512 224 783 219 93 10 chr3 115022522 115022727 -103014431 + MER58A DNA MER1_type 3 224 0 27 0 0 0 chr3 115022845 115022872 -103014286 + AT_rich Low_complexity Low_complexity 1 27 0 1552 167 62 7 chr3 115023264 115023540 -103013618 - AluJb SINE Alu -21 291 1 184 292 15 15 chr3 115023543 115023608 -103013550 - L2 LINE L2 -78 3235 3171 1936 146 10 3 chr3 115024470 115024765 -103012393 + AluSx SINE Alu 2 298 -14 25 31 0 0 chr3 115024867 115024899 -103012259 + AT_rich Low_complexity Low_complexity 1 32 0 450 329 134 64 chr3 115025440 115026451 -103010707 + L2 LINE L2 2164 3253 -19 434 259 28 9 chr3 115027984 115028092 -103009066 + L2 LINE L2 3199 3308 -5 326 210 0 0 chr3 115028119 115028181 -103008977 - MER116 DNA Mariner -18 62 1 332 267 38 0 chr3 115028246 115028351 -103008807 - L1ME LINE L1 -450 5671 5563 365 215 0 103 chr3 115028363 115028470 -103008688 - MER46A DNA MER2_type -140 96 1 2952 201 12 26 chr3 115028902 115029483 -103007675 - LTR39 LTR ERV1 -1 782 210 1811 146 0 4 chr3 115030700 115030975 -103006183 + AluSx SINE Alu 1 274 -38 252 0 0 0 chr3 115030976 115031004 -103006154 + (T)n Simple_repeat Simple_repeat 1 28 0 892 48 0 0 chr3 115031004 115031107 -103006051 - AluY SINE Alu -179 132 30 2034 151 10 3 chr3 115031479 115031784 -103005374 + AluJb SINE Alu 1 307 -5 1243 149 90 38 chr3 115031825 115032113 -103005045 - L1PA16 LINE L1 0 6166 5864 249 229 110 46 chr3 115032958 115033067 -103004091 - MIR SINE MIR -76 186 71 21 0 0 0 chr3 115034875 115034896 -103002262 + AT_rich Low_complexity Low_complexity 1 21 0 554 224 48 7 chr3 115035142 115035289 -103001869 + MER3 DNA MER1_type 2 154 -55 26 30 0 0 chr3 115035647 115035680 -103001478 + AT_rich Low_complexity Low_complexity 1 33 0 922 180 12 0 chr3 115036297 115036469 -103000689 - MER58B DNA MER1_type 0 341 168 492 269 42 5 chr3 115036499 115036715 -103000443 - L1MEc LINE L1 -3735 2480 2257 339 302 6 18 chr3 115036728 115036897 -103000261 - L1MEc LINE L1 -4366 2030 1864 547 226 61 22 chr3 115036965 115037146 -103000012 - L1MC4 LINE L1 -700 7342 7155 662 201 21 14 chr3 115037620 115037764 -102999394 + AluJb SINE Alu 15 159 -153 414 245 149 19 chr3 115038898 115039159 -102997999 + L1ME4a LINE L1 5621 5915 -206 243 61 0 0 chr3 115039185 115039218 -102997940 + (TG)n Simple_repeat Simple_repeat 2 34 0 441 0 0 0 chr3 115040408 115040457 -102996701 + (TA)n Simple_repeat Simple_repeat 1 49 0 1160 182 0 74 chr3 115040546 115040627 -102996531 - AluJo SINE Alu -98 214 129 2377 94 0 3 chr3 115040627 115040934 -102996224 - AluSg SINE Alu -4 306 1 1160 182 0 74 chr3 115040934 115041083 -102996075 - AluJo SINE Alu -183 129 1 26 30 0 0 chr3 115042015 115042048 -102995110 + AT_rich Low_complexity Low_complexity 1 33 0 1740 161 15 7 chr3 115042119 115042393 -102994765 + AluJb SINE Alu 5 280 -32 183 42 0 0 chr3 115042398 115042422 -102994736 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 217 306 161 20 chr3 115042647 115042846 -102994312 - L2 LINE L2 -1274 2040 1814 3937 172 17 5 chr3 115043488 115044339 -102992819 - L1MB7 LINE L1 -141 6043 5181 210 250 0 73 chr3 115045064 115045132 -102992026 - L2 LINE L2 0 3313 3251 527 286 138 14 chr3 115046174 115046384 -102990774 + MIR SINE MIR 15 250 -12 1320 190 124 42 chr3 115046571 115046997 -102990161 - MLT1C LTR MaLR 0 467 7 525 201 17 101 chr3 115047667 115047846 -102989312 + MIR SINE MIR 98 261 -1 210 372 41 14 chr3 115049265 115049410 -102987748 + L2 LINE L2 2916 3064 -208 2300 72 13 0 chr3 115050448 115050752 -102986406 - AluY SINE Alu -3 308 1 24 0 0 0 chr3 115052020 115052044 -102985114 + AT_rich Low_complexity Low_complexity 1 24 0 28 71 0 0 chr3 115052134 115052190 -102984968 + AT_rich Low_complexity Low_complexity 1 56 0 431 225 11 78 chr3 115052763 115052836 -102984322 + GA-rich Low_complexity Low_complexity 3 79 -101 1703 205 3 0 chr3 115052836 115053129 -102984029 + AluJo SINE Alu 1 294 -18 431 225 11 78 chr3 115053129 115053246 -102983912 + GA-rich Low_complexity Low_complexity 79 180 0 230 204 37 0 chr3 115053297 115053351 -102983807 + L1MC4 LINE L1 6646 6701 -1341 213 271 0 0 chr3 115053356 115053404 -102983754 + (TG)n Simple_repeat Simple_repeat 1 48 0 467 320 39 0 chr3 115053717 115053895 -102983263 + L2 LINE L2 2685 2869 -445 583 248 8 0 chr3 115053956 115054085 -102983073 + L2 LINE L2 3183 3312 -1 291 298 61 18 chr3 115054102 115054220 -102982938 - MIR SINE MIR -63 145 30 255 173 0 0 chr3 115054284 115054336 -102982822 + T-rich Low_complexity Low_complexity 1 52 0 371 182 9 27 chr3 115054553 115054663 -102982495 + CT-rich Low_complexity Low_complexity 1 108 0 1843 166 10 13 chr3 115054663 115054965 -102982193 - AluJo SINE Alu -11 301 1 219 297 0 16 chr3 115055208 115055272 -102981886 + MIR3 SINE MIR 92 154 -54 258 56 0 0 chr3 115055394 115055430 -102981728 + (TG)n Simple_repeat Simple_repeat 2 37 0 919 136 8 0 chr3 115055541 115055673 -102981485 - AluSq/x SINE Alu -179 133 1 1190 269 55 63 chr3 115056273 115056442 -102980716 - L2 LINE L2 0 3313 3144 2035 159 0 0 chr3 115056442 115056743 -102980415 + AluSx SINE Alu 1 301 -11 1190 269 55 63 chr3 115056743 115057149 -102980009 - L2 LINE L2 -169 3144 2740 2146 117 7 26 chr3 115058638 115058947 -102978211 + AluSx SINE Alu 1 303 -9 1410 107 45 16 chr3 115059657 115059899 -102977259 + Tigger4(Zombi) DNA MER2_type 2157 2405 -326 1836 115 59 0 chr3 115059921 115060226 -102976932 - Tigger4(Zombi) DNA MER2_type -874 1857 1535 287 109 0 0 chr3 115060224 115060270 -102976888 + Tigger4(Zombi) DNA MER2_type 2403 2448 -283 * 2276 91 0 7 chr3 115060270 115060568 -102976590 + AluSx SINE Alu 1 296 -16 2146 92 3 25 chr3 115061902 115062218 -102974940 + AluSc SINE Alu 1 309 0 1938 180 0 13 chr3 115062259 115062575 -102974583 + AluSx SINE Alu 1 312 0 253 244 47 16 chr3 115062644 115062771 -102974387 + L1MDa LINE L1 1304 1434 -5106 249 315 21 63 chr3 115063974 115064130 -102973028 - MIR SINE MIR -70 138 4 693 222 111 30 chr3 115065373 115065571 -102971587 - MER58C DNA MER1_type -1 214 1 250 329 0 40 chr3 115065647 115065796 -102971362 - MER96 DNA MER1_type? -13 162 20 1148 281 48 19 chr3 115065979 115066396 -102970762 - L1MEc LINE L1 -5933 463 35 183 171 129 71 chr3 115067037 115067107 -102970051 - L3b LINE CR1 -235 1348 1275 496 301 40 23 chr3 115067183 115067359 -102969799 + MIR SINE MIR 1 179 -83 24 32 0 0 chr3 115067675 115067706 -102969452 + AT_rich Low_complexity Low_complexity 1 31 0 232 346 94 0 chr3 115067708 115067778 -102969380 - MIR SINE MIR -32 230 168 802 221 136 39 chr3 115067778 115068109 -102969049 + MLT1A1 LTR MaLR 1 363 -2 232 346 94 0 chr3 115068109 115068165 -102968993 - MIR SINE MIR -94 168 92 24 0 0 0 chr3 115069888 115069912 -102967246 + AT_rich Low_complexity Low_complexity 1 24 0 1093 190 13 95 chr3 115070755 115071071 -102966087 + MLT1D LTR MaLR 1 290 -215 572 164 15 72 chr3 115071071 115071266 -102965892 - MER67C LTR ERV1 0 710 527 279 169 155 14 chr3 115071671 115071742 -102965416 + L1ME3 LINE L1 5515 5595 -526 236 164 91 18 chr3 115071791 115071846 -102965312 + MER5C DNA MER1_type 2 60 -264 308 306 38 15 chr3 115071904 115072165 -102964993 + L1ME3 LINE L1 5681 5947 -215 553 190 7 49 chr3 115072383 115072525 -102964633 + AluJo SINE Alu 1 136 -176 866 169 78 0 chr3 115073007 115073173 -102963985 - MER5A DNA MER1_type 0 189 11 374 216 0 57 chr3 115073170 115073258 -102963900 - MER5B DNA MER1_type -94 84 2 * 237 240 0 0 chr3 115075078 115075128 -102962030 + MIR3 SINE MIR 150 199 -9 1632 137 110 57 chr3 115076206 115076591 -102960567 + LTR46 LTR ERV1 1 364 -96 288 0 0 0 chr3 115076591 115076623 -102960535 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 473 49 0 0 chr3 115076626 115076687 -102960471 - L1PA5 LINE L1 -16 6138 6078 1632 137 110 57 chr3 115076687 115076734 -102960424 + LTR46 LTR ERV1 365 460 0 29 47 0 0 chr3 115077934 115077977 -102959181 + AT_rich Low_complexity Low_complexity 1 43 0 197 295 82 0 chr3 115078366 115078427 -102958731 - MIR SINE MIR -95 113 48 218 196 0 20 chr3 115079718 115079769 -102957389 + (CA)n Simple_repeat Simple_repeat 2 51 0 1928 166 15 3 chr3 115079783 115080114 -102957044 - MLT1A1 LTR MaLR 0 365 31 681 314 158 18 chr3 115080365 115080751 -102956407 + L3 LINE CR1 1135 1574 -3 21 36 0 0 chr3 115081416 115081444 -102955714 + AT_rich Low_complexity Low_complexity 1 28 0 1980 84 0 0 chr3 115081837 115082076 -102955082 + AluSc SINE Alu 47 285 -24 252 288 107 34 chr3 115082481 115082686 -102954472 + L1M4 LINE L1 4826 5045 -1101 480 204 8 4 chr3 115082686 115082765 -102954393 + L1MB1 LINE L1 5703 5780 -391 225 0 0 0 chr3 115082765 115082790 -102954368 + (TG)n Simple_repeat Simple_repeat 2 26 0 209 59 59 0 chr3 115082789 115082823 -102954335 + (CATATA)n Simple_repeat Simple_repeat 3 38 0 * 480 204 8 4 chr3 115082790 115082892 -102954266 + L1MB1 LINE L1 5780 5848 -323 264 149 0 0 chr3 115082894 115082941 -102954217 + (TA)n Simple_repeat Simple_repeat 1 47 0 2256 132 26 19 chr3 115082943 115083321 -102953837 + L1MB1 LINE L1 5783 6163 -5 270 281 112 7 chr3 115083331 115083609 -102953549 + L1M4 LINE L1 5038 5344 -802 25 75 0 0 chr3 115084048 115084101 -102953057 + AT_rich Low_complexity Low_complexity 1 53 0 2117 113 24 0 chr3 115084146 115084437 -102952721 + AluSp SINE Alu 1 298 -15 53 81 0 0 chr3 115084450 115084573 -102952585 + AT_rich Low_complexity Low_complexity 1 123 0 2412 107 48 34 chr3 115084760 115085114 -102952044 - THE1B LTR MaLR -3 361 3 12254 97 10 8 chr3 115085116 115086270 -102950888 - THE1B-int LTR MaLR 0 1580 419 1722 157 7 4 chr3 115086270 115086571 -102950587 + AluSx SINE Alu 1 302 0 12254 97 10 8 chr3 115086571 115086989 -102950169 - THE1B-int LTR MaLR -1161 419 3 2081 129 62 39 chr3 115086990 115087346 -102949812 - THE1B LTR MaLR 0 364 1 1046 133 72 0 chr3 115087487 115087668 -102949490 - L1MA4 LINE L1 -4 6296 6103 195 306 16 0 chr3 115088103 115088165 -102948993 + MIR SINE MIR 183 245 -17 468 293 77 77 chr3 115088411 115088790 -102948368 + MARNA DNA Mariner 139 517 -69 312 27 0 0 chr3 115091029 115091066 -102946092 + (TC)n Simple_repeat Simple_repeat 2 38 0 302 0 26 0 chr3 115091065 115091103 -102946055 + (TG)n Simple_repeat Simple_repeat 2 40 0 * 1663 177 81 29 chr3 115091103 115091447 -102945711 - MLT1A1 LTR MaLR -3 362 1 6728 214 90 29 chr3 115091447 115092982 -102944176 - MLT1A1-int LTR MaLR 0 1735 107 202 260 82 14 chr3 115093767 115093840 -102943318 - MIR SINE MIR -85 123 46 516 217 9 9 chr3 115094919 115095025 -102942133 + MIR SINE MIR 40 145 -117 2222 92 65 9 chr3 115095423 115095748 -102941410 + MER61A LTR ERV1 1 343 0 248 222 111 25 chr3 115096046 115096127 -102941031 + MIR SINE MIR 162 249 -13 2185 108 3 0 chr3 115096206 115096493 -102940665 + AluSg SINE Alu 20 307 -3 207 254 30 15 chr3 115096969 115097036 -102940122 + CT-rich Low_complexity Low_complexity 1 68 0 352 265 88 20 chr3 115097052 115097154 -102940004 - L2 LINE L2 -32 3281 3173 28 0 0 0 chr3 115098054 115098082 -102939076 + AT_rich Low_complexity Low_complexity 1 28 0 708 279 110 40 chr3 115098118 115098619 -102938539 + L2 LINE L2 2769 3312 -1 1876 121 40 7 chr3 115099767 115100040 -102937118 + AluSx SINE Alu 12 293 -19 953 94 16 0 chr3 115100043 115100171 -102936987 + AluSp/q SINE Alu 167 296 -17 3019 235 61 3 chr3 115100198 115100908 -102936250 + Charlie1a DNA MER1_type 9 759 -696 384 125 0 0 chr3 115100948 115101012 -102936146 + (TG)n Simple_repeat Simple_repeat 2 65 0 348 150 0 17 chr3 115101039 115101099 -102936059 + MER21B LTR ERV1 667 725 -138 257 208 19 19 chr3 115101098 115101151 -102936007 + MER2 DNA MER2_type 292 344 -1 * 329 311 121 21 chr3 115101449 115101639 -102935519 + MIR SINE MIR 53 261 -1 349 282 81 27 chr3 115102701 115102850 -102934308 - MIR SINE MIR -32 230 74 436 277 48 21 chr3 115102926 115103114 -102934044 + L2 LINE L2 2784 2976 -338 257 273 104 26 chr3 115103484 115103561 -102933597 + MER91A DNA MER1_type 88 170 -26 932 171 19 67 chr3 115103682 115103892 -102933266 - MER3 DNA MER1_type -4 205 6 539 197 8 60 chr3 115106228 115106296 -102930862 - MER81 DNA DNA -1 113 52 2756 103 19 5 chr3 115106296 115106666 -102930492 - THE1C LTR MaLR 0 375 1 539 197 8 60 chr3 115106666 115106714 -102930444 - MER81 DNA DNA -62 52 3 532 326 81 19 chr3 115108730 115109052 -102928106 - L1MC4a LINE L1 -1944 5864 5523 863 164 85 0 chr3 115109171 115109336 -102927822 - MER5A DNA MER1_type 0 189 11 379 216 0 57 chr3 115109333 115109421 -102927737 - MER5B DNA MER1_type -94 84 2 * 278 321 132 6 chr3 115110016 115110175 -102926983 + MER91B DNA MER1_type 1 179 -11 263 235 39 0 chr3 115110630 115110681 -102926477 + L2 LINE L2 3166 3218 -54 420 269 248 0 chr3 115110691 115110836 -102926322 + MER5A DNA MER1_type 9 189 0 349 143 0 48 chr3 115110836 115110899 -102926259 + L2 LINE L2 3254 3313 0 22 0 0 0 chr3 115112276 115112298 -102924860 + AT_rich Low_complexity Low_complexity 1 22 0 236 400 11 0 chr3 115112539 115112634 -102924524 - L3 LINE CR1 -72 1505 1410 255 321 205 5 chr3 115112692 115112882 -102924276 - L3 LINE CR1 -371 1206 979 25 0 0 0 chr3 115113820 115113845 -102923313 + AT_rich Low_complexity Low_complexity 1 25 0 194 287 137 67 chr3 115113957 115114166 -102922992 + MIR SINE MIR 2 212 -50 205 274 59 0 chr3 115115500 115115551 -102921607 - L2 LINE L2 -1 3312 3259 514 216 27 61 chr3 115116034 115116182 -102920976 - MER58B DNA MER1_type -1 340 198 1903 188 23 36 chr3 115117097 115117490 -102919668 - MLT1B LTR MaLR 0 390 3 2063 102 57 3 chr3 115117801 115118084 -102919074 - AluSg SINE Alu -12 298 1 722 280 106 28 chr3 115118312 115118633 -102918525 - MLT1J2 LTR MaLR -34 416 71 1839 158 35 133 chr3 115120146 115120664 -102916494 - MLT1C LTR MaLR 0 467 1 185 191 95 0 chr3 115121165 115121207 -102915951 + L2 LINE L2 3028 3073 -199 261 331 71 47 chr3 115121257 115121553 -102915605 - L2 LINE L2 -351 2963 2661 567 249 32 13 chr3 115121559 115121728 -102915430 + MER20B DNA MER1_type 16 196 -23 1874 150 84 31 chr3 115122026 115122346 -102914812 + MER1B DNA MER1_type 1 337 0 302 312 129 18 chr3 115122543 115122713 -102914445 - MER5A DNA MER1_type 0 189 1 231 88 0 0 chr3 115122977 115123011 -102914147 + (A)n Simple_repeat Simple_repeat 1 34 0 1841 159 7 10 chr3 115123340 115123642 -102913516 - AluSx SINE Alu -11 301 1 328 364 23 15 chr3 115125291 115125423 -102911735 - MER91A DNA MER1_type -63 133 1 186 297 29 80 chr3 115127119 115127257 -102909901 + L2 LINE L2 2855 2985 -328 232 37 0 0 chr3 115127527 115127554 -102909604 + L1MC4a LINE L1 5773 5799 -367 339 246 112 0 chr3 115127596 115127730 -102909428 + L1MC4a LINE L1 5883 6031 -1777 234 212 0 61 chr3 115128219 115128285 -102908873 + L1MC4a LINE L1 6616 6677 -1131 244 287 147 39 chr3 115128300 115128429 -102908729 + L1MC5 LINE L1 7630 7772 -189 192 294 20 0 chr3 115128701 115128752 -102908406 + L2 LINE L2 2902 2953 -360 573 244 96 24 chr3 115128848 115129057 -102908101 + L2 LINE L2 3087 3310 -3 380 285 89 56 chr3 115131872 115132294 -102904864 - LTR16B LTR ERVL -11 452 2 24 0 0 0 chr3 115135004 115135028 -102902130 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr3 115135974 115135997 -102901161 + AT_rich Low_complexity Low_complexity 1 23 0 302 261 134 28 chr3 115137846 115137988 -102899170 + MLT2F LTR ERVL 1 157 -471 740 249 157 8 chr3 115138061 115138430 -102898728 + MLT2F LTR ERVL 238 661 -2 295 290 22 29 chr3 115138573 115138711 -102898447 - MLT1L LTR MaLR -338 277 141 26 64 0 0 chr3 115139267 115139314 -102897844 + AT_rich Low_complexity Low_complexity 1 47 0 1899 81 14 1 chr3 115139314 115139598 -102897560 - L1PA8 LINE L1 -15 6157 5835 302 261 134 28 chr3 115139822 115139964 -102897194 + MLT2F LTR ERVL 1 157 -471 709 247 153 13 chr3 115140037 115140409 -102896749 + MLT2F LTR ERVL 238 661 -2 2698 55 22 0 chr3 115140853 115141220 -102895938 - L1PA8A LINE L1 -302 5829 5455 1360 144 87 109 chr3 115141686 115142144 -102895014 - LTR7 LTR ERV1 -2 448 1 398 290 180 9 chr3 115144144 115144361 -102892797 + LTR33 LTR ERVL 8 261 -260 631 95 9 0 chr3 115144368 115144484 -102892674 - L1PA12 LINE L1 -2962 4622 4506 42127 36 2 3 chr3 115144516 115150677 -102886481 - L1PA4 LINE L1 -1 6154 1 8556 189 156 16 chr3 115150685 115152754 -102884404 - L1PA12 LINE L1 -3063 4521 1376 14995 94 0 2 chr3 115152756 115155712 -102881446 + L1PA8 LINE L1 3191 6172 0 227 276 23 58 chr3 115156421 115156508 -102880650 + MIR3 SINE MIR 110 193 -15 341 306 35 12 chr3 115156990 115157163 -102879995 - L1ME LINE L1 -414 5707 5531 480 100 44 33 chr3 115157946 115158036 -102879122 - Tigger7 DNA MER2_type 0 2487 2397 2341 169 90 4 chr3 115158037 115158504 -102878654 - Tigger7 DNA MER2_type -1966 521 15 4974 171 70 10 chr3 115158849 115159817 -102877341 + Tigger7 DNA MER2_type 1 1026 -1461 592 115 11 0 chr3 115159815 115159902 -102877256 + Tigger7 DNA MER2_type 2400 2487 0 * 202 304 0 0 chr3 115160045 115160091 -102877067 - MIR SINE MIR -99 109 64 30148 28 4 1 chr3 115161546 115166125 -102871033 + L1PA2 LINE L1 1560 6151 -4 438 157 0 43 chr3 115166126 115166224 -102870934 + L1MB3 LINE L1 5812 5904 -258 774 113 0 75 chr3 115166265 115166398 -102870760 + AluSp SINE Alu 29 151 -162 388 177 126 1 chr3 115166405 115166505 -102870653 - MLT1B LTR MaLR -276 98 1 2236 128 0 3 chr3 115166580 115166893 -102870265 + AluSx SINE Alu 1 312 0 623 259 78 5 chr3 115166917 115167122 -102870036 + MLT1A2 LTR MaLR 155 374 0 1281 120 36 9 chr3 115167125 115167350 -102869808 + L1MB3 LINE L1 5927 6157 -26 529 224 16 16 chr3 115167390 115167515 -102869643 - MER63 DNA MER1_type -311 751 1 408 273 81 34 chr3 115168006 115168303 -102868855 - L1M2 LINE L1 -614 5564 5254 2389 85 0 0 chr3 115168426 115168731 -102868427 + AluY SINE Alu 1 305 -6 600 327 65 23 chr3 115168774 115169126 -102868032 - MLT1I LTR MaLR -2 407 41 2145 112 66 23 chr3 115170655 115171004 -102866154 + THE1B LTR MaLR 1 364 0 798 207 114 0 chr3 115171752 115171945 -102865213 - MER58C DNA MER1_type 0 215 1 1505 185 15 12 chr3 115173452 115173549 -102863609 + AluJo SINE Alu 35 130 -182 2300 103 0 7 chr3 115173549 115173859 -102863299 + AluY SINE Alu 1 308 -3 1505 185 15 12 chr3 115173859 115174020 -102863138 + AluJo SINE Alu 130 294 -18 274 304 87 51 chr3 115174719 115175031 -102862127 - MER110-int LTR ERV1 -2461 2186 1864 333 336 25 0 chr3 115175242 115175364 -102861794 - HERVL LTR ERVL -3104 2550 2426 1191 113 30 10 chr3 115175364 115175567 -102861591 - LTR30 LTR ERV1 0 722 516 10411 31 9 0 chr3 115175893 115177915 -102859243 - L1PA4 LINE L1 0 6155 4120 2148 22 4 0 chr3 115177915 115178184 -102858974 + L1PA4 LINE L1 3837 4106 -2040 412 98 16 0 chr3 115178184 115178245 -102858913 - LTR30 LTR ERV1 -192 530 469 2351 107 0 7 chr3 115180321 115180631 -102856527 + AluSg SINE Alu 1 308 -2 212 171 0 0 chr3 115182024 115182059 -102855099 + (TATATG)n Simple_repeat Simple_repeat 5 39 0 21 71 0 0 chr3 115182249 115182291 -102854867 + AT_rich Low_complexity Low_complexity 1 42 0 326 282 130 34 chr3 115182583 115182860 -102854298 + L1ME4a LINE L1 5632 5939 -182 21 0 0 0 chr3 115184587 115184608 -102852550 + AT_rich Low_complexity Low_complexity 1 21 0 325 279 73 22 chr3 115184905 115185084 -102852074 + L1ME4a LINE L1 5754 5941 -180 2185 134 0 6 chr3 115185664 115185978 -102851180 + AluSx SINE Alu 1 312 0 350 119 51 0 chr3 115186081 115186140 -102851018 + L1PA16 LINE L1 6092 6153 -13 245 349 172 11 chr3 115186734 115186995 -102850163 + L2 LINE L2 1289 1591 -1723 3863 84 0 8 chr3 115186999 115187585 -102849573 - L1P LINE L1 -2502 3644 3064 3257 48 31 0 chr3 115187585 115187998 -102849160 + L1PA7 LINE L1 5727 6154 0 1788 294 100 51 chr3 115187998 115189204 -102847954 + L2 LINE L2 1587 2852 -462 330 200 13 0 chr3 115189909 115189984 -102847174 + L1MA8 LINE L1 6205 6280 -11 311 221 58 10 chr3 115191433 115191537 -102845621 + LTR16A1 LTR ERVL 267 375 -82 180 0 0 0 chr3 115191815 115191835 -102845323 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2292 118 0 3 chr3 115194083 115194396 -102842762 + AluSq SINE Alu 1 312 -1 432 304 82 23 chr3 115194715 115194935 -102842223 + MLT1L LTR MaLR 348 580 -35 2171 122 10 0 chr3 115195395 115195699 -102841459 + AluSx SINE Alu 1 307 -5 360 0 0 0 chr3 115195699 115195739 -102841419 + (GGAA)n Simple_repeat Simple_repeat 1 40 0 189 348 94 33 chr3 115196583 115196764 -102840394 + L2 LINE L2 1713 1904 -1410 482 327 95 19 chr3 115197082 115197293 -102839865 - MIR SINE MIR -30 232 6 385 179 0 0 chr3 115197600 115197667 -102839491 - MER94 DNA DNA -62 72 6 255 229 43 0 chr3 115198272 115198342 -102838816 + MLT1K LTR MaLR 509 581 -7 219 131 0 56 chr3 115198433 115198540 -102838618 + (TA)n Simple_repeat Simple_repeat 2 102 0 839 221 145 31 chr3 115199299 115199589 -102837569 - MER5C DNA MER1_type 0 324 2 596 333 73 31 chr3 115199998 115200864 -102836294 - ERVL LTR ERVL -675 5089 4152 457 316 124 21 chr3 115201111 115201402 -102835756 - ERVL LTR ERVL -1914 3850 3530 317 250 12 0 chr3 115201658 115201738 -102835420 - ERVL LTR ERVL -3224 2540 2460 216 0 0 0 chr3 115203025 115203049 -102834109 + (T)n Simple_repeat Simple_repeat 1 24 0 697 127 204 0 chr3 115203098 115203255 -102833903 - MER53 DNA DNA 0 189 1 274 358 21 0 chr3 115203332 115203427 -102833731 + MIR SINE MIR 13 109 -153 252 252 195 0 chr3 115204085 115204208 -102832950 + L1ME LINE L1 5616 5762 -359 26 0 0 0 chr3 115204470 115204496 -102832662 + AT_rich Low_complexity Low_complexity 1 26 0 187 262 24 0 chr3 115204981 115205023 -102832135 - MER5A DNA MER1_type -143 46 4 407 307 69 18 chr3 115205030 115205362 -102831796 + L1MC4 LINE L1 7694 8042 0 235 296 148 0 chr3 115205379 115205467 -102831691 + MER5A DNA MER1_type 60 160 -29 * 333 339 9 9 chr3 115205390 115205502 -102831656 - MER5A DNA MER1_type -72 117 6 2069 227 115 9 chr3 115205763 115206336 -102830822 - MLT1E1 LTR MaLR -16 638 5 1747 232 102 17 chr3 115206351 115206820 -102830338 + MLT1F LTR MaLR 24 532 -10 538 276 55 15 chr3 115208054 115208253 -102828905 + MIR SINE MIR 43 249 -13 2234 112 3 0 chr3 115208500 115208795 -102828363 - AluSx SINE Alu -16 296 1 406 295 69 14 chr3 115209050 115209338 -102827820 + L1MEd LINE L1 954 1257 -4862 2239 111 3 0 chr3 115209912 115210209 -102826949 - AluSx SINE Alu -13 299 2 2410 94 0 0 chr3 115210237 115210536 -102826622 + AluSg SINE Alu 1 299 -11 562 335 78 6 chr3 115210919 115211098 -102826060 - MER91A DNA MER1_type -4 192 1 248 370 148 0 chr3 115211731 115211839 -102825319 + L2 LINE L2 3134 3257 -15 211 239 0 0 chr3 115211979 115212025 -102825133 + T-rich Low_complexity Low_complexity 1 46 0 214 350 111 8 chr3 115213247 115213364 -102823794 + MIR SINE MIR 19 147 -115 187 284 111 12 chr3 115214281 115214362 -102822796 - MIR3 SINE MIR -105 103 15 1182 263 62 19 chr3 115215268 115215701 -102821457 - LTR16A1 LTR ERVL -2 455 4 541 212 79 32 chr3 115215742 115215931 -102821227 - LTR33A LTR ERVL -9 514 317 369 231 39 70 chr3 115216028 115216184 -102820974 - LTR33A LTR ERVL -347 176 26 523 208 114 47 chr3 115217985 115218221 -102818937 + L1MD3 LINE L1 6867 7118 -877 489 198 0 28 chr3 115218222 115218328 -102818830 + MLT1F1 LTR MaLR 36 138 -429 1226 195 57 3 chr3 115218328 115218626 -102818532 + L1MD3 LINE L1 7419 7732 -263 6944 116 11 4 chr3 115218626 115220239 -102816919 + L1MA1 LINE L1 4679 6302 0 1170 163 18 46 chr3 115220251 115220461 -102816697 + L1MD3 LINE L1 7715 7916 -79 2311 92 7 0 chr3 115220461 115220756 -102816402 - AluSq SINE Alu -16 297 1 1170 163 18 46 chr3 115220756 115220828 -102816330 + L1MD3 LINE L1 7916 7989 -6 481 294 105 54 chr3 115221179 115221848 -102815310 - L1MEd LINE L1 -4976 1143 441 217 402 69 0 chr3 115222958 115223045 -102814113 - L2 LINE L2 -18 3254 3162 343 302 132 8 chr3 115224470 115224599 -102812559 - MIR SINE MIR -50 212 68 1359 271 48 46 chr3 115224607 115224685 -102812473 + L1MDa LINE L1 26 102 -6438 360 0 0 0 chr3 115224685 115224725 -102812433 + (CA)n Simple_repeat Simple_repeat 2 41 0 1359 271 48 46 chr3 115224725 115225260 -102811898 + L1MDa LINE L1 102 1034 -5506 * 3786 161 69 27 chr3 115225258 115226174 -102810984 + L1MD1 LINE L1 5153 6104 -138 2092 168 16 0 chr3 115226176 115226551 -102810607 + MLT1B LTR MaLR 4 384 -6 605 187 22 29 chr3 115226551 115226690 -102810468 + L1MD1 LINE L1 6093 6230 -12 1188 68 0 0 chr3 115227756 115227903 -102809255 - AluY SINE Alu -4 307 161 1215 60 0 60 chr3 115228144 115228312 -102808846 - AluY SINE Alu -153 158 1 386 276 31 36 chr3 115230441 115230637 -102806521 + LTR16C LTR ERVL 246 440 -51 9132 147 17 5 chr3 115230637 115232304 -102804854 - L1P LINE L1 -845 5301 3616 3912 104 5 2 chr3 115232304 115232873 -102804285 + L1PA14 LINE L1 5585 6161 0 26 50 0 0 chr3 115234164 115234204 -102802954 + AT_rich Low_complexity Low_complexity 1 40 0 189 167 0 0 chr3 115234285 115234339 -102802819 + (TA)n Simple_repeat Simple_repeat 2 55 0 38 22 0 0 chr3 115234340 115234385 -102802773 + AT_rich Low_complexity Low_complexity 1 45 0 2391 95 0 0 chr3 115234873 115235178 -102801980 + AluSg SINE Alu 2 306 -4 622 187 22 29 chr3 115236244 115236383 -102800775 - L1MD1 LINE L1 -12 6230 6093 2222 168 16 0 chr3 115236383 115236758 -102800400 - MLT1B LTR MaLR -6 384 4 4034 161 69 27 chr3 115236760 115237676 -102799482 - L1MD1 LINE L1 -138 6104 5153 1539 271 48 46 chr3 115237674 115238209 -102798949 - L1MDa LINE L1 -5506 1034 102 * 360 0 0 0 chr3 115238209 115238249 -102798909 + (TG)n Simple_repeat Simple_repeat 2 41 0 1539 271 48 46 chr3 115238249 115238327 -102798831 - L1MDa LINE L1 -6438 102 26 346 302 132 8 chr3 115238335 115238464 -102798694 + MIR SINE MIR 68 212 -50 217 402 69 0 chr3 115239888 115239975 -102797183 + L2 LINE L2 3162 3254 -18 233 163 23 0 chr3 115240679 115240722 -102796436 + L1MEd LINE L1 11 54 -6065 649 294 105 54 chr3 115241086 115241755 -102795403 + L1MEd LINE L1 441 1143 -4976 349 279 197 38 chr3 115241882 115242172 -102794986 + L1MEd LINE L1 1312 1647 -4482 1293 293 19 41 chr3 115242220 115242681 -102794477 + LTR16B LTR ERVL 14 464 0 1104 350 39 46 chr3 115242688 115243554 -102793604 + HERV16 LTR ERVL 6 865 -4131 2292 111 40 26 chr3 115243563 115243915 -102793243 + THE1B LTR MaLR 1 357 -7 10908 112 15 10 chr3 115243918 115245485 -102791673 + THE1B-int LTR MaLR 1 1574 -6 2220 137 33 25 chr3 115245491 115245850 -102791308 + THE1B LTR MaLR 1 362 -2 319 322 70 7 chr3 115245904 115246047 -102791111 + HERV16 LTR ERVL 1908 2059 -3595 623 371 26 13 chr3 115246294 115246462 -102790696 + HERV16 LTR ERVL 2142 2317 -3447 2092 128 3 3 chr3 115246462 115246766 -102790392 + AluSx SINE Alu 1 304 -8 623 371 26 13 chr3 115246766 115246910 -102790248 + HERV16 LTR ERVL 2317 2458 -3306 3678 90 8 11 chr3 115246920 115247452 -102789706 + LTR30 LTR ERV1 1 530 -192 1383 60 16 0 chr3 115247452 115247636 -102789522 - L1P LINE L1 -2040 4106 3920 21 36 0 0 chr3 115247752 115247780 -102789378 + AT_rich Low_complexity Low_complexity 1 28 0 269 207 12 148 chr3 115247981 115248150 -102789008 + L1M4 LINE L1 3428 3573 -2573 872 259 135 54 chr3 115248279 115248708 -102788450 - LTR16B LTR ERVL 0 464 1 227 315 0 11 chr3 115248709 115248798 -102788360 + L1M4 LINE L1 3792 3879 -2267 284 271 49 41 chr3 115249297 115249419 -102787739 + LTR16C LTR ERVL 367 489 -2 410 210 48 40 chr3 115249696 115249820 -102787338 - LTR33 LTR ERVL -60 461 337 722 231 104 52 chr3 115249945 115250343 -102786815 + MLT1D LTR MaLR 1 505 0 24 67 0 0 chr3 115250986 115251031 -102786127 + AT_rich Low_complexity Low_complexity 1 45 0 415 270 58 49 chr3 115251317 115251543 -102785615 + HAL1b LINE L1 127 354 -994 558 44 0 0 chr3 115251863 115251931 -102785227 - AluSg/x SINE Alu -81 231 164 666 240 119 72 chr3 115253819 115254556 -102782602 + L1MEc LINE L1 1013 1784 -4612 2065 152 33 30 chr3 115254878 115255239 -102781919 + THE1B LTR MaLR 3 364 0 29 47 0 0 chr3 115256325 115256368 -102780790 + AT_rich Low_complexity Low_complexity 1 43 0 290 247 0 12 chr3 115256715 115256796 -102780362 + L1ME3A LINE L1 5883 5962 -208 255 289 72 62 chr3 115256854 115257062 -102780096 + L1ME3A LINE L1 5960 6169 -1 455 262 36 107 chr3 115257940 115258043 -102779115 + HAL1 LINE L1 1 110 -2397 1914 57 50 44 chr3 115258043 115258341 -102778817 - L1MA1 LINE L1 0 6302 6003 455 262 36 107 chr3 115258341 115258400 -102778758 + HAL1 LINE L1 110 172 -2335 207 0 0 0 chr3 115258400 115258423 -102778735 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 455 262 36 107 chr3 115258423 115258568 -102778590 + HAL1 LINE L1 172 287 -2220 800 243 104 56 chr3 115258653 115259027 -102778131 - LTR52 LTR ERVL -22 399 8 1992 259 101 49 chr3 115259222 115260304 -102776854 + HAL1 LINE L1 734 1871 -636 189 0 0 0 chr3 115260355 115260376 -102776782 + (T)n Simple_repeat Simple_repeat 1 21 0 600 88 0 0 chr3 115260994 115261074 -102776084 - MADE1 DNA Mariner 0 80 1 425 290 23 0 chr3 115261184 115261315 -102775843 + L1ME LINE L1 5511 5644 -477 825 283 32 8 chr3 115261942 115262193 -102774965 - LTR16B LTR ERVL 0 464 208 2253 108 3 0 chr3 115263270 115263567 -102773591 - AluSx SINE Alu -13 299 2 302 268 16 34 chr3 115264023 115264155 -102773003 + LTR16A1 LTR ERVL 319 480 -11 274 158 61 0 chr3 115265101 115265183 -102771975 + (TA)n Simple_repeat Simple_repeat 1 87 0 500 242 187 9 chr3 115267039 115267258 -102769900 - MIR SINE MIR -3 259 2 298 267 0 33 chr3 115268705 115268795 -102768363 + L2 LINE L2 3224 3310 -3 1345 60 0 18 chr3 115269326 115269494 -102767664 + AluY SINE Alu 138 302 -9 22 80 0 0 chr3 115269909 115269959 -102767199 + AT_rich Low_complexity Low_complexity 1 50 0 777 235 70 47 chr3 115269959 115270385 -102766773 + L1MC5 LINE L1 7499 7934 -27 5802 155 21 18 chr3 115271435 115273417 -102763741 + L1MA4 LINE L1 4277 6272 -28 29 0 0 0 chr3 115273439 115273468 -102763690 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr3 115274488 115274512 -102762646 + AT_rich Low_complexity Low_complexity 1 24 0 837 246 63 28 chr3 115275046 115275298 -102761860 + MIR SINE MIR 1 261 -1 528 290 120 10 chr3 115275304 115275504 -102761654 - MIR SINE MIR -27 235 14 2053 142 3 0 chr3 115275743 115276038 -102761120 - AluSx SINE Alu -16 296 1 300 240 66 41 chr3 115276080 115276201 -102760957 - L1P LINE L1 -1144 5002 4879 293 200 10 64 chr3 115276279 115276396 -102760762 - L1MC4 LINE L1 -13 8029 7686 262 263 92 0 chr3 115276946 115277022 -102760136 - L2 LINE L2 -4 3309 3227 23 33 0 0 chr3 115277833 115277863 -102759295 + AT_rich Low_complexity Low_complexity 1 30 0 354 314 75 11 chr3 115278280 115278468 -102758690 - MIR SINE MIR -17 245 46 28 86 0 0 chr3 115279020 115279090 -102758068 + AT_rich Low_complexity Low_complexity 1 70 0 240 326 181 0 chr3 115280316 115280460 -102756698 + LTR16A LTR ERVL 13 182 -268 498 240 110 7 chr3 115280496 115280650 -102756508 + LTR16A LTR ERVL 277 446 -4 386 294 127 41 chr3 115280931 115281176 -102755982 - L2 LINE L2 0 3313 3048 200 327 208 0 chr3 115282349 115282450 -102754708 - L2 LINE L2 -1 3271 3150 645 280 28 28 chr3 115282503 115282717 -102754441 - MIR SINE MIR -19 243 30 196 164 30 0 chr3 115283052 115283119 -102754039 + (TTATA)n Simple_repeat Simple_repeat 5 73 0 29 0 0 0 chr3 115283119 115283148 -102754010 + AT_rich Low_complexity Low_complexity 1 29 0 489 99 80 0 chr3 115283149 115283410 -102753748 + (TA)n Simple_repeat Simple_repeat 1 281 0 50 0 0 0 chr3 115283999 115284049 -102753109 + AT_rich Low_complexity Low_complexity 1 50 0 563 202 46 0 chr3 115284949 115285058 -102752100 + MER5A DNA MER1_type 4 117 -72 2625 43 0 0 chr3 115285059 115285360 -102751798 + AluY SINE Alu 1 301 -10 5525 132 60 10 chr3 115285801 115286782 -102750376 + ERVL-B1 LTR ERVL 4729 5758 -6 1894 208 109 21 chr3 115286783 115287214 -102749944 + MLT2B1 LTR ERVL 3 481 -39 207 0 0 0 chr3 115287214 115287237 -102749921 + (TG)n Simple_repeat Simple_repeat 2 24 0 1894 208 109 21 chr3 115287237 115287281 -102749877 + MLT2B1 LTR ERVL 481 520 0 24 0 0 0 chr3 115287521 115287545 -102749613 + AT_rich Low_complexity Low_complexity 1 24 0 2230 124 3 0 chr3 115287632 115287931 -102749227 - AluSx SINE Alu -12 300 1 316 330 0 10 chr3 115288353 115288450 -102748708 - L2 LINE L2 -14 3299 3204 288 377 14 7 chr3 115288706 115288852 -102748306 + L2 LINE L2 2802 2948 -366 * 298 266 0 13 chr3 115288844 115288923 -102748235 + L2 LINE L2 3236 3313 0 1419 183 8 4 chr3 115289290 115289531 -102747627 - AluJo SINE Alu -21 291 50 659 197 23 15 chr3 115289540 115289672 -102747486 - FLAM_C SINE Alu 0 133 1 1129 154 53 18 chr3 115289721 115289948 -102747210 + MSTB LTR MaLR 192 426 0 2364 130 52 26 chr3 115290159 115290581 -102746577 + Tigger2a DNA MER2_type 2 434 0 700 294 95 27 chr3 115291436 115292077 -102745081 - L1MC4a LINE L1 -111 6010 5325 348 332 52 31 chr3 115292275 115292504 -102744654 - L1MC4a LINE L1 -1090 5056 4823 1639 145 93 4 chr3 115292578 115292847 -102744311 + AluJb SINE Alu 1 293 -19 4700 147 63 34 chr3 115293197 115294541 -102742617 + L1MA6 LINE L1 4906 6300 0 396 165 13 0 chr3 115294794 115294873 -102742285 - MER116 DNA Mariner 0 80 1 26 30 0 0 chr3 115295300 115295333 -102741825 + AT_rich Low_complexity Low_complexity 1 33 0 414 271 17 94 chr3 115297319 115297500 -102739658 + MER5B DNA MER1_type 8 174 -4 1011 209 11 0 chr3 115297962 115298149 -102739009 - MER5A DNA MER1_type 0 189 1 333 296 56 21 chr3 115298979 115299121 -102738037 + L1ME4a LINE L1 5971 6117 -4 924 113 0 0 chr3 115302181 115302305 -102734853 - AluSc SINE Alu -9 300 177 2446 83 0 3 chr3 115302357 115302659 -102734499 + AluSx SINE Alu 1 301 -11 1420 206 59 89 chr3 115302915 115303474 -102733684 - MER34 LTR ERV1 0 542 1 308 331 107 55 chr3 115304091 115304399 -102732759 + L1M4 LINE L1 4787 5110 -1036 906 156 61 11 chr3 115304572 115304752 -102732406 - MER20 DNA MER1_type -2 217 29 260 269 148 28 chr3 115304837 115305019 -102732139 - MER102a DNA MER1_type -15 315 112 211 346 173 19 chr3 115305981 115306189 -102730969 - L2 LINE L2 -567 2747 2508 730 271 78 12 chr3 115306212 115306467 -102730691 - LTR16A1 LTR ERVL -185 272 1 1064 208 78 28 chr3 115308385 115308732 -102728426 + MSTD LTR MaLR 1 396 0 279 400 44 6 chr3 115309343 115309523 -102727635 + L2 LINE L2 2601 2787 -527 575 215 16 94 chr3 115309540 115309731 -102727427 - MER69A DNA AcHobo 0 177 2 661 162 0 0 chr3 115309798 115309897 -102727261 + AluJ/FLAM SINE Alu 1 99 -213 308 244 132 35 chr3 115310642 115310839 -102726319 - LTR16B LTR ERVL 0 464 249 2734 309 38 10 chr3 115310839 115311777 -102725381 - HERV16 LTR ERVL -1922 3074 2110 2556 298 48 19 chr3 115311798 115312912 -102724246 - HERV16 LTR ERVL -3166 1830 617 3070 120 21 0 chr3 115313186 115313660 -102723498 - L1PA14 LINE L1 -9 6152 5669 798 80 0 0 chr3 115313661 115313774 -102723384 - L1PA14 LINE L1 -638 5527 5415 * 7473 162 23 1 chr3 115313771 115315007 -102722151 - L1PA12 LINE L1 -6314 1267 5 225 0 0 0 chr3 115315216 115315241 -102721917 + (TATTG)n Simple_repeat Simple_repeat 1 25 0 354 229 182 33 chr3 115318097 115318311 -102718847 + L1ME4a LINE L1 5675 5920 -201 2015 149 34 26 chr3 115318479 115318862 -102718296 + LTR45B LTR ERV1 3 388 -101 2281 106 0 0 chr3 115319519 115319812 -102717346 + AluSx SINE Alu 1 293 -19 1018 218 28 59 chr3 115320501 115320855 -102716303 + MER65-int LTR ERV1 2778 3120 -3211 1015 180 31 24 chr3 115320881 115321136 -102716022 + LTR57-int LTR ERVL 1320 1576 -3767 2672 94 36 3 chr3 115321184 115321547 -102715611 + THE1C LTR MaLR 1 375 0 10371 102 41 38 chr3 115321547 115323122 -102714036 + THE1C-int LTR MaLR 1 1580 0 2782 91 5 3 chr3 115323122 115323496 -102713662 + THE1C LTR MaLR 1 375 0 1066 210 99 81 chr3 115323530 115324478 -102712680 + MER65-int LTR ERV1 1541 3730 -2868 1070 224 125 41 chr3 115324534 115325164 -102711994 + MER65-int LTR ERV1 2607 3270 -1666 690 200 96 43 chr3 115325236 115325592 -102711566 + MER65-int LTR ERV1 3510 3959 -977 601 252 7 7 chr3 115325678 115325813 -102711345 + MER65-int LTR ERV1 3607 3741 -1130 280 295 0 0 chr3 115326992 115327087 -102710071 + MER70-int LTR ERVL 4577 4671 -352 1466 210 65 0 chr3 115327595 115327919 -102709239 + MER101 LTR ERV1 26 370 -104 1969 128 68 6 chr3 115328114 115328451 -102708707 + LTR45B LTR ERV1 1 358 -131 321 274 148 61 chr3 115328713 115328942 -102708216 - MIR SINE MIR -1 261 16 4771 196 31 10 chr3 115329096 115330108 -102707050 - L1MD1 LINE L1 -6 6236 5204 1716 160 3 17 chr3 115330108 115330395 -102706763 - AluJo SINE Alu -6 306 24 4771 196 31 10 chr3 115330395 115330598 -102706560 - L1MD1 LINE L1 -1038 5204 5007 6184 177 40 39 chr3 115330599 115331938 -102705220 - L1MC3 LINE L1 -965 6820 5478 366 23 0 0 chr3 115331938 115331981 -102705177 + (TG)n Simple_repeat Simple_repeat 2 44 0 6184 177 40 39 chr3 115331981 115332017 -102705141 - L1MC3 LINE L1 -2307 5478 5444 728 203 125 17 chr3 115332232 115332464 -102704694 - MER20B DNA MER1_type -3 780 524 928 194 68 25 chr3 115332539 115332776 -102704382 - MLT1A2 LTR MaLR 0 374 128 456 252 31 57 chr3 115333751 115333910 -102703248 - MER20B DNA MER1_type -627 156 2 370 206 0 0 chr3 115334924 115334987 -102702171 - MER63 DNA MER1_type -5 1057 995 42305 37 27 2 chr3 115334989 115341005 -102696153 + L1PA4 LINE L1 3 6155 0 1334 108 25 10 chr3 115341331 115341535 -102695623 + LTR30 LTR ERV1 516 722 0 387 370 57 9 chr3 115341535 115341762 -102695396 + ERVL LTR ERVL 2465 2702 -3062 394 315 72 68 chr3 115341868 115342398 -102694760 + MER110-int LTR ERV1 1864 2395 -2252 916 205 0 19 chr3 115342879 115343040 -102694118 - AluJo/FRAM SINE Alu -8 294 137 1224 117 0 0 chr3 115343040 115343211 -102693947 - AluY SINE Alu -3 308 138 2217 118 0 0 chr3 115344148 115344444 -102692714 + AluSg SINE Alu 1 296 -14 1855 139 49 38 chr3 115344560 115344927 -102692231 - THE1C LTR MaLR 0 375 5 1083 80 11 40 chr3 115344931 115345107 -102692051 - THE1C-int LTR MaLR 0 1580 1410 274 152 43 0 chr3 115345107 115345153 -102692005 + Tigger2 DNA MER2_type 22 69 -2649 * 1997 146 133 30 chr3 115345140 115345545 -102691613 + Tigger2 DNA MER2_type 2272 2718 0 1567 68 5 0 chr3 115347095 115347302 -102689856 + L1PA5 LINE L1 5947 6154 0 198 0 0 0 chr3 115347389 115347411 -102689747 + (GAAAA)n Simple_repeat Simple_repeat 3 24 0 340 147 0 59 chr3 115347661 115347729 -102689429 - MER41B LTR ERV1 -91 544 481 9106 122 39 13 chr3 115348138 115349567 -102687591 - Tigger2 DNA MER2_type 0 2718 1253 922 66 16 0 chr3 115349567 115349689 -102687469 + AluSp/q SINE Alu 186 309 -4 7420 137 21 22 chr3 115349689 115350952 -102686206 - Tigger2 DNA MER2_type -1456 1262 1 21 0 0 0 chr3 115351209 115351230 -102685928 + AT_rich Low_complexity Low_complexity 1 21 0 1574 205 34 48 chr3 115351499 115351966 -102685192 - MER89 LTR ERV1 0 559 1 242 287 104 43 chr3 115356060 115356175 -102680983 + LTR16A LTR ERVL 1 122 -328 1348 232 95 59 chr3 115356207 115357146 -102680012 - L1ME LINE L1 -414 5748 4791 * 1754 248 85 42 chr3 115357141 115358003 -102679155 - L1ME LINE L1 -1737 4409 3511 289 244 37 24 chr3 115358306 115358388 -102678770 + MIR SINE MIR 179 261 -1 543 286 35 60 chr3 115360288 115360623 -102676535 - MLT1I LTR MaLR -6 543 71 270 234 43 0 chr3 115361085 115361179 -102675979 - L1ME4a LINE L1 0 6121 6024 432 0 0 0 chr3 115361194 115361242 -102675916 + (CA)n Simple_repeat Simple_repeat 2 49 0 387 0 0 0 chr3 115361430 115361473 -102675685 + (CA)n Simple_repeat Simple_repeat 2 44 0 2068 153 14 3 chr3 115361475 115361827 -102675331 + MER47A DNA MER2_type 7 362 -4 225 257 162 7 chr3 115362083 115362219 -102674939 - L1ME4a LINE L1 -331 5790 5634 255 304 110 105 chr3 115362360 115363098 -102674060 + L2 LINE L2 2310 3047 -225 21 0 0 0 chr3 115363183 115363204 -102673954 + AT_rich Low_complexity Low_complexity 1 21 0 225 250 0 0 chr3 115363260 115363312 -102673846 + (TATG)n Simple_repeat Simple_repeat 1 52 0 253 224 13 0 chr3 115363661 115363763 -102673395 + MIR3 SINE MIR 123 201 -7 521 319 35 6 chr3 115363892 115364061 -102673097 + MIR3 SINE MIR 34 207 -1 8361 101 2 2 chr3 115364319 115365522 -102671636 - L1PA8 LINE L1 -1237 4909 3708 6818 67 13 1 chr3 115365522 115366760 -102670398 + L1PA8 LINE L1 4922 6170 -2 255 89 54 0 chr3 115367641 115367697 -102669461 + (TA)n Simple_repeat Simple_repeat 2 60 0 21 0 0 0 chr3 115369267 115369288 -102667870 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr3 115373687 115373712 -102663446 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr3 115373762 115373790 -102663368 + AT_rich Low_complexity Low_complexity 1 28 0 248 322 153 0 chr3 115374442 115374560 -102662598 + L2 LINE L2 3137 3272 0 3831 190 118 90 chr3 115374699 115375793 -102661365 + L1MC4 LINE L1 6564 7709 -333 1971 120 0 79 chr3 115375793 115376159 -102660999 - MER1B DNA MER1_type 0 337 1 3831 190 118 90 chr3 115376159 115376500 -102660658 + L1MC4 LINE L1 7709 8039 -3 529 180 0 0 chr3 115376871 115376960 -102660198 + MER2 DNA MER2_type 1 89 -256 202 224 149 0 chr3 115377013 115377080 -102660078 + MER5A DNA MER1_type 112 188 -1 186 308 115 13 chr3 115377014 115377092 -102660066 - MER5A DNA MER1_type -101 88 3 * 211 283 38 0 chr3 115377502 115377555 -102659603 + MIR SINE MIR 23 77 -131 2389 232 101 50 chr3 115377587 115378359 -102658799 - MER21B LTR ERV1 -52 811 1 189 376 64 0 chr3 115378359 115378484 -102658674 + MIR3 SINE MIR 70 202 -6 309 258 42 84 chr3 115378523 115378690 -102658468 - MER63A DNA MER1_type 0 210 51 2112 109 0 3 chr3 115379384 115379710 -102657448 - AluSq SINE Alu 0 325 1 322 354 56 60 chr3 115379900 115380363 -102656795 - L2 LINE L2 -8 3264 2804 457 244 135 13 chr3 115380520 115380676 -102656482 - MIR SINE MIR -12 250 76 203 274 55 0 chr3 115382159 115382232 -102654926 + MIR SINE MIR 127 203 -59 286 233 240 7 chr3 115383296 115383442 -102653716 + Charlie8 DNA MER1_type 86 265 -2152 197 357 93 21 chr3 115384266 115384406 -102652752 - MIR3 SINE MIR -58 150 1 702 243 93 37 chr3 115385445 115385713 -102651445 + L1MC4a LINE L1 5630 5912 -1896 2170 154 72 10 chr3 115385713 115386116 -102651042 - MSTA LTR MaLR 0 428 1 302 409 0 9 chr3 115386154 115386269 -102650889 - L2 LINE L2 -1 3271 3158 1631 91 10 0 chr3 115386481 115386689 -102650469 - L1PA7 LINE L1 -5 6149 5940 3147 80 17 88 chr3 115386973 115387451 -102649707 + MLT2A1 LTR ERVL 1 444 0 539 246 18 0 chr3 115388204 115388314 -102648844 + MER81 DNA DNA 1 112 -2 595 309 86 16 chr3 115388479 115388783 -102648375 + LTR16C LTR ERVL 159 483 -8 404 202 126 130 chr3 115388789 115389012 -102648146 - MLT1H1 LTR MaLR -6 549 328 1673 229 76 16 chr3 115389194 115389630 -102647528 - MLT1C LTR MaLR 0 467 6 289 407 0 0 chr3 115389737 115389855 -102647303 - L2 LINE L2 -16 3297 3180 353 241 45 27 chr3 115389995 115390107 -102647051 + MIR3 SINE MIR 91 204 -4 446 94 0 0 chr3 115390716 115390780 -102646378 - AluJb SINE Alu -8 304 241 1189 142 0 11 chr3 115390780 115390956 -102646202 - AluJb SINE Alu -136 176 3 205 311 14 14 chr3 115390981 115391055 -102646103 + MER5A DNA MER1_type 7 80 -109 * 278 291 25 0 chr3 115391008 115391087 -102646071 - MER5A DNA MER1_type -22 167 87 2859 7 0 0 chr3 115391627 115391933 -102645225 + AluYb8 SINE Alu 1 306 -12 1835 152 0 27 chr3 115392047 115392343 -102644815 + AluJo SINE Alu 2 289 -23 507 291 90 71 chr3 115392411 115392999 -102644159 - L2 LINE L2 -63 3209 2627 2525 184 62 0 chr3 115393002 115393453 -102643705 + MLT2B1 LTR ERVL 1 479 -41 1362 137 4 70 chr3 115393454 115393647 -102643511 - Tigger5 DNA MER2_type -1 2322 2149 2358 90 0 0 chr3 115393647 115393947 -102643211 - AluY SINE Alu -11 300 1 1362 137 4 70 chr3 115393947 115394009 -102643149 - Tigger5 DNA MER2_type -174 2149 2084 339 217 0 0 chr3 115394033 115394093 -102643065 - Tigger5 DNA MER2_type -2262 61 2 318 143 0 0 chr3 115394093 115394139 -102643019 + MLT2B1 LTR ERVL 470 515 0 743 333 21 24 chr3 115394157 115394490 -102642668 - L2 LINE L2 -707 2607 2276 723 311 29 16 chr3 115394563 115394807 -102642351 + MIR SINE MIR 2 248 -14 2584 157 43 2 chr3 115395203 115395618 -102641540 - Tigger2a DNA MER2_type 0 434 3 1887 159 3 3 chr3 115395783 115396079 -102641079 + AluSx SINE Alu 1 296 -16 2142 112 3 7 chr3 115396136 115396458 -102640700 + AluSx SINE Alu 1 321 0 1153 147 49 0 chr3 115396766 115396970 -102640188 - Tigger1 DNA MER2_type 0 2418 2205 830 185 0 25 chr3 115396962 115397119 -102640039 - Tigger1 DNA MER2_type -2261 157 5 * 4542 78 58 31 chr3 115398294 115398911 -102638247 + MER51A LTR ERV1 1 634 0 269 314 122 6 chr3 115400169 115400325 -102636833 + MIR SINE MIR 20 193 -69 201 226 0 38 chr3 115400476 115400529 -102636629 + GA-rich Low_complexity Low_complexity 1 51 0 249 33 0 0 chr3 115401004 115401034 -102636124 + (TTTTTG)n Simple_repeat Simple_repeat 6 35 0 420 111 0 0 chr3 115402690 115402753 -102634405 + (TG)n Simple_repeat Simple_repeat 1 63 0 232 328 0 50 chr3 115403746 115403865 -102633293 - L2 LINE L2 -1 3312 3200 217 314 144 0 chr3 115403996 115404114 -102633044 - MIR SINE MIR -119 143 9 23 0 0 0 chr3 115405429 115405452 -102631706 + AT_rich Low_complexity Low_complexity 1 23 0 539 307 11 6 chr3 115405596 115405772 -102631386 + MER117 DNA MER1_type 3 179 -18 579 324 58 26 chr3 115406067 115406370 -102630788 + LTR16B LTR ERVL 37 354 -110 1845 196 38 19 chr3 115406370 115406738 -102630420 + THE1C LTR MaLR 1 375 0 579 324 58 26 chr3 115406738 115406777 -102630381 + LTR16B LTR ERVL 354 390 -74 242 236 42 0 chr3 115406998 115407070 -102630088 + MIR SINE MIR 128 202 -60 304 283 192 0 chr3 115407172 115407271 -102629887 - L2 LINE L2 -3 3310 3193 28 0 0 0 chr3 115408033 115408061 -102629097 + AT_rich Low_complexity Low_complexity 1 28 0 2206 98 14 3 chr3 115408139 115408435 -102628723 + AluSc SINE Alu 1 299 -10 237 242 61 53 chr3 115408480 115408612 -102628546 + MER112 DNA MER1_type 66 198 -62 438 132 0 0 chr3 115408626 115408702 -102628456 + (TG)n Simple_repeat Simple_repeat 1 76 0 562 156 31 0 chr3 115408724 115408820 -102628338 - Charlie4 DNA MER1_type -45 1916 1818 278 231 0 0 chr3 115408887 115408939 -102628219 + MER112 DNA MER1_type 200 251 -9 278 342 18 0 chr3 115409054 115409168 -102627990 + (CA)n Simple_repeat Simple_repeat 1 116 0 1397 151 49 105 chr3 115409798 115410018 -102627140 + MLT1B LTR MaLR 1 197 -193 2699 91 36 6 chr3 115410018 115410382 -102626776 - THE1C LTR MaLR 0 375 1 1397 151 49 105 chr3 115410382 115410505 -102626653 + MLT1B LTR MaLR 197 325 -65 309 329 44 15 chr3 115410967 115411104 -102626054 - MIR3 SINE MIR -27 181 41 30 45 0 0 chr3 115411476 115411520 -102625638 + AT_rich Low_complexity Low_complexity 1 44 0 427 266 89 25 chr3 115411842 115412000 -102625158 - MIR3 SINE MIR -28 180 13 337 222 148 37 chr3 115412280 115412442 -102624716 + MIR SINE MIR 83 262 0 264 310 43 60 chr3 115412540 115412656 -102624502 + MIR SINE MIR 17 130 -78 195 258 299 10 chr3 115413486 115413583 -102623575 + MIR SINE MIR 31 155 -107 432 167 12 0 chr3 115413661 115413745 -102623413 - MER53 DNA DNA -104 85 1 246 278 56 0 chr3 115414034 115414106 -102623052 + L3 LINE CR1 1492 1567 -10 909 162 0 0 chr3 115414326 115414474 -102622684 - MER69 DNA AcHobo 0 2526 2379 1975 163 17 164 chr3 115414733 115414982 -102622176 - L1MA3 LINE L1 -1 6304 6020 1550 183 3 39 chr3 115414982 115415293 -102621865 - AluJb SINE Alu -10 302 3 1975 163 17 164 chr3 115415293 115415501 -102621657 - L1MA3 LINE L1 -285 6020 5537 644 303 22 26 chr3 115415501 115415772 -102621386 - L1ME3 LINE L1 -215 5947 5678 270 0 0 0 chr3 115416129 115416159 -102620999 + (CA)n Simple_repeat Simple_repeat 1 30 0 198 313 90 24 chr3 115417711 115417878 -102619280 - MIR SINE MIR -73 189 16 574 277 11 17 chr3 115418085 115418287 -102618871 + L1ME3A LINE L1 5461 5660 -502 274 298 54 12 chr3 115418369 115418537 -102618621 + L1ME3A LINE L1 5793 5967 -203 718 274 127 14 chr3 115419391 115419745 -102617413 + L1ME4a LINE L1 5691 6084 -37 531 228 9 18 chr3 115419853 115419967 -102617191 - MER81 DNA DNA 0 114 2 501 269 34 51 chr3 115420565 115420786 -102616372 + MIR SINE MIR 8 225 -37 390 262 179 31 chr3 115420788 115421017 -102616141 - LTR16A LTR ERVL -42 408 146 382 329 37 16 chr3 115421054 115421300 -102615858 + LTR16B LTR ERVL 60 310 -154 21 36 0 0 chr3 115421411 115421439 -102615719 + AT_rich Low_complexity Low_complexity 1 28 0 494 349 126 4 chr3 115421958 115422196 -102614962 + L3 LINE CR1 240 506 -1071 617 306 6 16 chr3 115422357 115422540 -102614618 + MER5A DNA MER1_type 8 188 -1 1851 298 80 29 chr3 115422578 115423401 -102613757 + L3 LINE CR1 642 1506 -71 740 205 104 115 chr3 115423450 115423797 -102613361 + MLT1A1 LTR MaLR 50 361 -4 183 42 0 0 chr3 115425183 115425207 -102611951 + (TG)n Simple_repeat Simple_repeat 2 25 0 229 328 0 0 chr3 115426380 115426441 -102610717 + MIR SINE MIR 81 141 -121 2130 101 0 0 chr3 115426793 115427070 -102610088 - AluSx SINE Alu -1 311 35 430 361 135 32 chr3 115427311 115427895 -102609263 + L2 LINE L2 2323 2966 -348 569 233 128 0 chr3 115427897 115428053 -102609105 + MER5A DNA MER1_type 4 182 -7 2463 258 46 20 chr3 115428093 115428286 -102608872 - MER20B DNA MER1_type 0 783 597 1267 93 0 0 chr3 115428286 115428448 -102608710 - L1PA8 LINE L1 -3 6169 6008 2463 258 46 20 chr3 115428448 115429011 -102608147 - MER20B DNA MER1_type -186 597 7 2800 137 9 40 chr3 115429022 115429466 -102607692 + MSTB1 LTR MaLR 3 432 0 1073 195 112 20 chr3 115429670 115429921 -102607237 - MLT1C LTR MaLR -46 421 148 22 0 0 0 chr3 115430151 115430173 -102606985 + AT_rich Low_complexity Low_complexity 1 22 0 268 283 0 0 chr3 115431330 115431390 -102605768 - MIR3 SINE MIR -7 201 142 740 268 180 4 chr3 115431391 115431652 -102605506 + L2 LINE L2 2320 2626 -688 770 223 62 16 chr3 115431661 115431854 -102605304 + MER58A DNA MER1_type 23 224 0 1138 246 112 47 chr3 115431980 115432427 -102604731 + L2 LINE L2 2819 3294 -19 2329 124 41 16 chr3 115433243 115433607 -102603551 + THE1C LTR MaLR 1 373 -2 933 219 22 0 chr3 115434766 115434949 -102602209 - MER5A DNA MER1_type 0 189 3 757 291 17 0 chr3 115435838 115436017 -102601141 - MLT1I LTR MaLR -77 332 151 2321 65 0 62 chr3 115436038 115436361 -102600797 - AluSc SINE Alu -6 303 1 875 173 103 98 chr3 115436389 115436758 -102600400 + MLT1C LTR MaLR 20 390 0 1569 250 113 7 chr3 115436821 115437281 -102599877 + LTR33 LTR ERVL 2 510 -11 320 333 170 0 chr3 115437453 115437618 -102599540 + MIR SINE MIR 22 214 -48 2208 210 55 33 chr3 115437619 115438223 -102598935 + MLT1E2 LTR MaLR 1 617 -9 653 283 4 49 chr3 115439150 115439376 -102597782 - MIR SINE MIR -1 261 46 2974 171 51 2 chr3 115439473 115440001 -102597157 + MLT2B3 LTR ERVL 1 554 0 360 312 48 85 chr3 115440182 115440371 -102596787 - L2 LINE L2 -218 3054 2873 2560 62 0 0 chr3 115440613 115440922 -102596236 + AluY SINE Alu 1 309 -2 213 154 0 0 chr3 115441008 115441047 -102596111 + (TTCA)n Simple_repeat Simple_repeat 2 40 0 430 222 162 0 chr3 115441048 115441165 -102595993 - L2 LINE L2 0 3313 3178 352 276 82 22 chr3 115441878 115442012 -102595146 + MIR SINE MIR 68 209 -53 516 279 63 129 chr3 115443541 115444486 -102592672 - L1M2 LINE L1 -5461 1388 387 258 304 10 20 chr3 115448885 115448987 -102588171 + L2 LINE L2 2603 2703 -611 294 272 163 0 chr3 115449155 115449247 -102587911 + L2 LINE L2 2937 3043 -229 764 236 79 22 chr3 115449748 115449977 -102587181 - MIR SINE MIR -12 250 9 612 330 151 45 chr3 115450035 115451483 -102585675 - L2 LINE L2 -361 2953 1353 253 319 76 50 chr3 115451711 115451830 -102585328 + L2 LINE L2 3143 3264 -8 786 218 41 37 chr3 115452629 115453052 -102584106 - LTR37A LTR ERV1 -5 421 35 230 333 94 0 chr3 115453572 115453668 -102583490 - MIR SINE MIR -118 144 40 243 0 0 0 chr3 115455646 115455673 -102581485 + (T)n Simple_repeat Simple_repeat 1 27 0 368 273 47 39 chr3 115456225 115456353 -102580805 + MIR SINE MIR 36 164 -98 2871 191 59 21 chr3 115457074 115457868 -102579290 - L1MD2 LINE L1 -22 6337 5461 223 330 89 39 chr3 115458217 115458396 -102578762 + MIR SINE MIR 4 191 -71 391 272 0 0 chr3 115458404 115458485 -102578673 - L2 LINE L2 -6 3266 3186 343 267 209 24 chr3 115458539 115458749 -102578409 - MIR SINE MIR -8 254 6 2381 194 92 99 chr3 115459001 115459650 -102577508 - MLT1E3 LTR MaLR 0 624 10 240 175 16 32 chr3 115459651 115459714 -102577444 - MLT2C1 LTR ERVL -335 62 1 2267 120 0 0 chr3 115460628 115460929 -102576229 + AluSx SINE Alu 1 301 -11 371 358 119 12 chr3 115461000 115461399 -102575759 - L3 LINE CR1 -8 1569 1052 545 293 158 15 chr3 115461415 115461681 -102575477 + L2 LINE L2 2610 2913 -401 312 274 42 0 chr3 115461804 115461899 -102575259 + L2 LINE L2 3214 3312 -1 34 42 0 0 chr3 115461942 115461990 -102575168 + AT_rich Low_complexity Low_complexity 1 48 0 758 233 28 6 chr3 115462063 115462243 -102574915 - L2 LINE L2 -763 2551 2368 272 221 81 23 chr3 115462311 115462397 -102574761 + MIR SINE MIR 110 200 -62 655 297 20 32 chr3 115463548 115463797 -102573361 - MIR SINE MIR -14 248 3 288 238 144 55 chr3 115465644 115466026 -102571132 - L1ME4a LINE L1 -2 6119 5704 263 233 116 12 chr3 115466058 115466144 -102571014 - L1ME4a LINE L1 -517 5604 5510 664 278 24 28 chr3 115466437 115466649 -102570509 - MIR SINE MIR 0 262 52 204 401 45 38 chr3 115466795 115466927 -102570231 - L2 LINE L2 -1 3271 3139 4953 171 45 25 chr3 115467876 115468934 -102568224 - Tigger6a DNA MER2_type 0 1083 4 2409 93 0 3 chr3 115469400 115469711 -102567447 - AluSg SINE Alu 0 310 1 24 77 0 0 chr3 115470274 115470326 -102566832 + AT_rich Low_complexity Low_complexity 1 52 0 331 248 72 64 chr3 115470985 115471110 -102566048 + L2 LINE L2 3183 3308 -5 239 237 0 17 chr3 115471136 115471195 -102565963 + L2 LINE L2 3215 3272 0 424 162 0 0 chr3 115471909 115471983 -102565175 - Tigger4(Zombi) DNA MER2_type 0 2731 2658 2116 105 3 50 chr3 115472291 115472614 -102564544 + AluSg SINE Alu 3 310 0 26 0 0 0 chr3 115473698 115473724 -102563434 + AT_rich Low_complexity Low_complexity 1 26 0 513 238 65 48 chr3 115473936 115474104 -102563054 + MER20 DNA MER1_type 17 187 -32 1017 223 84 98 chr3 115474564 115475076 -102562082 - MLT1D LTR MaLR 0 505 1 306 146 0 0 chr3 115477006 115477061 -102560097 - L1MC1 LINE L1 -10 6323 6269 851 190 58 16 chr3 115477061 115477271 -102559887 - L1MC1 LINE L1 -650 5683 5478 27 29 0 0 chr3 115478584 115478618 -102558540 + AT_rich Low_complexity Low_complexity 1 34 0 22 35 0 0 chr3 115480014 115480043 -102557115 + AT_rich Low_complexity Low_complexity 1 29 0 894 145 0 0 chr3 115481008 115481139 -102556019 - FLAM_A SINE Alu -2 131 1 1812 150 0 49 chr3 115482241 115482568 -102554590 - AluJb SINE Alu -1 311 1 23 68 0 0 chr3 115483223 115483267 -102553891 + AT_rich Low_complexity Low_complexity 1 44 0 33 25 0 0 chr3 115484595 115484635 -102552523 + AT_rich Low_complexity Low_complexity 1 40 0 2231 121 0 0 chr3 115484825 115485122 -102552036 + AluSc SINE Alu 1 297 -12 462 49 0 0 chr3 115486085 115486146 -102551012 + (GA)n Simple_repeat Simple_repeat 2 62 0 2709 42 0 0 chr3 115486557 115486868 -102550290 + AluY SINE Alu 1 311 0 240 226 0 0 chr3 115489680 115489742 -102547416 + (TA)n Simple_repeat Simple_repeat 2 63 0 219 114 0 0 chr3 115490765 115490800 -102546358 + (T)n Simple_repeat Simple_repeat 1 35 0 22 35 0 0 chr3 115491969 115491998 -102545160 + AT_rich Low_complexity Low_complexity 1 29 0 323 260 55 39 chr3 115492161 115492288 -102544870 + MIR SINE MIR 17 145 -63 700 288 110 42 chr3 115492331 115492786 -102544372 - MLT1K LTR MaLR -2 586 101 1695 166 7 0 chr3 115493926 115494197 -102542961 + AluJb SINE Alu 16 288 -24 21 0 0 0 chr3 115494197 115494218 -102542940 + AT_rich Low_complexity Low_complexity 1 21 0 2447 97 0 0 chr3 115495087 115495397 -102541761 - AluSq SINE Alu -3 310 1 396 235 241 6 chr3 115496750 115496912 -102540246 + MIR SINE MIR 60 259 -3 277 230 95 14 chr3 115499564 115499638 -102537520 - L2 LINE L2 -19 3253 3174 218 278 65 107 chr3 115499657 115499745 -102537413 + MIR SINE MIR 91 170 -92 1749 158 3 36 chr3 115499745 115500048 -102537110 - AluJb SINE Alu -19 293 1 218 278 65 107 chr3 115500048 115500128 -102537030 + MIR SINE MIR 170 252 -10 283 337 76 16 chr3 115500742 115500926 -102536232 + MIR3 SINE MIR 4 198 -10 797 244 140 58 chr3 115501389 115501754 -102535404 + Charlie8 DNA MER1_type 96 490 -1927 227 209 20 14 chr3 115502083 115502144 -102535014 - MIR SINE MIR -70 138 89 2380 102 0 3 chr3 115502642 115502947 -102534211 + AluSx SINE Alu 1 304 -8 1523 194 72 36 chr3 115503231 115503592 -102533566 + MLT1A2 LTR MaLR 1 374 0 199 324 98 22 chr3 115503738 115503963 -102533195 - MIR SINE MIR 0 262 21 180 0 0 0 chr3 115504527 115504547 -102532611 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1369 203 0 21 chr3 115504550 115504836 -102532322 - AluJo SINE Alu -30 282 3 705 245 105 85 chr3 115504989 115505704 -102531454 - L1MC5 LINE L1 -35 7926 7198 5666 128 20 52 chr3 115506578 115507061 -102530097 - L1MA5 LINE L1 0 6300 5803 2349 82 3 0 chr3 115507061 115507352 -102529806 - AluSp SINE Alu -17 296 5 5666 128 20 52 chr3 115507352 115507905 -102529253 - L1MA5 LINE L1 -497 5803 5297 587 269 33 6 chr3 115508005 115508187 -102528971 + MER112 DNA MER1_type 66 252 -8 11134 48 12 18 chr3 115508276 115509683 -102527475 + SVA Other Other 1 1386 0 1893 172 112 31 chr3 115511199 115511618 -102525540 - MLT1D LTR MaLR -52 453 1 2428 144 48 15 chr3 115512061 115512576 -102524582 - LTR35 LTR ERV1 0 618 26 3532 155 90 20 chr3 115512576 115513240 -102523918 + MER50 LTR ERV1 1 711 -23 235 69 0 0 chr3 115513241 115513270 -102523888 - LTR35 LTR ERV1 -589 29 1 232 143 200 0 chr3 115513911 115513981 -102523177 + MER91C DNA MER1_type 36 119 -21 304 333 0 0 chr3 115514171 115514261 -102522897 + L2 LINE L2 3224 3313 0 1150 242 126 19 chr3 115515693 115516115 -102521043 + MLT1C LTR MaLR 1 467 0 181 263 53 13 chr3 115516441 115516517 -102520641 - L2 LINE L2 -251 3021 2943 2518 73 0 0 chr3 115517831 115518132 -102519026 - AluY SINE Alu -10 301 1 308 273 9 73 chr3 115518220 115518330 -102518828 + L2 LINE L2 3156 3258 -14 483 213 27 87 chr3 115519009 115519192 -102517966 - MIR SINE MIR -65 197 26 1493 120 7 110 chr3 115519389 115519697 -102517461 - AluJo SINE Alu -10 302 27 886 261 64 66 chr3 115519700 115520230 -102516928 - LTR38 LTR ERV1 -5 606 59 233 184 0 0 chr3 115520248 115520286 -102516872 - AluJo SINE Alu -261 38 1 2246 104 17 0 chr3 115520741 115521039 -102516119 + AluSx SINE Alu 1 303 -9 375 132 221 0 chr3 115521117 115521185 -102515973 + MER45A DNA AcHobo 84 166 -12 262 188 75 38 chr3 115522157 115522237 -102514921 + MIR SINE MIR 110 192 -70 187 103 51 0 chr3 115522951 115522990 -102514168 + CT-rich Low_complexity Low_complexity 3 43 0 315 287 27 18 chr3 115523533 115523679 -102513479 - MIR SINE MIR -44 164 17 4500 64 3 2 chr3 115523802 115524367 -102512791 + L1PA8 LINE L1 5606 6171 -1 327 275 14 28 chr3 115524914 115525056 -102512102 + L1MC4 LINE L1 7902 8041 -1 * 1698 254 69 31 chr3 115525051 115525705 -102511453 + L1MC4 LINE L1 7225 7903 -139 2308 99 0 3 chr3 115526095 115526387 -102510771 + AluSg SINE Alu 1 291 -19 409 59 0 0 chr3 115526402 115526453 -102510705 + Ricksha DNA DNA 304 354 -900 313 230 11 46 chr3 115526454 115526541 -102510617 + MLT2B3 LTR ERVL 12 95 -459 1114 275 65 23 chr3 115526711 115527140 -102510018 - HERV16 LTR ERVL -4474 522 76 506 314 34 24 chr3 115527185 115527392 -102509766 - LTR16A LTR ERVL -5 445 237 281 253 52 45 chr3 115528823 115528844 -102508314 - L1MA10 LINE L1 0 6334 6314 2927 234 70 23 chr3 115528844 115529670 -102507488 - L1ME1 LINE L1 -7 6159 5295 * 5040 200 21 26 chr3 115529644 115530137 -102507021 - L1MC3 LINE L1 0 7785 7291 3913 78 8 10 chr3 115530137 115530649 -102506509 + MER9 LTR ERVK 1 511 0 5040 200 21 26 chr3 115530649 115531263 -102505895 - L1MC3 LINE L1 -494 7291 6684 409 221 0 107 chr3 115531260 115531409 -102505749 - L1ME1 LINE L1 -812 5334 5202 * 944 243 48 35 chr3 115532474 115532787 -102504371 - MER46C DNA MER2_type -21 317 1 1354 205 17 6 chr3 115532971 115533272 -102503886 - MER61B LTR ERV1 -28 396 1 585 168 348 11 chr3 115533272 115533551 -102503607 - Zaphod DNA AcHobo -43 3936 536 2281 223 96 42 chr3 115533563 115534363 -102502795 - Zaphod DNA AcHobo -3087 944 102 2512 52 0 3 chr3 115534435 115534740 -102502418 + AluY SINE Alu 1 304 -7 730 219 146 0 chr3 115534815 115535007 -102502151 + MER58A DNA MER1_type 5 224 0 2581 52 0 10 chr3 115535012 115535340 -102501818 - AluY SINE Alu 0 311 1 308 273 9 73 chr3 115535428 115535538 -102501620 + L2 LINE L2 3156 3258 -14 483 213 27 87 chr3 115536217 115536400 -102500758 - MIR SINE MIR -65 197 26 1459 123 7 110 chr3 115536597 115536905 -102500253 - AluJo SINE Alu -10 302 27 886 261 64 66 chr3 115536908 115537438 -102499720 - LTR38 LTR ERV1 -5 606 59 233 184 0 0 chr3 115537456 115537494 -102499664 - AluJo SINE Alu -262 38 1 2246 104 17 0 chr3 115537947 115538245 -102498913 + AluSx SINE Alu 1 303 -9 375 132 221 0 chr3 115538323 115538391 -102498767 + MER45A DNA AcHobo 84 166 -12 262 188 75 38 chr3 115539363 115539443 -102497715 + MIR SINE MIR 110 192 -70 187 103 51 0 chr3 115540157 115540196 -102496962 + CT-rich Low_complexity Low_complexity 3 43 0 315 287 27 18 chr3 115540739 115540885 -102496273 - MIR SINE MIR -44 164 17 4500 64 3 2 chr3 115541008 115541573 -102495585 + L1PA8 LINE L1 5606 6171 -1 194 302 0 0 chr3 115542314 115542367 -102494791 + L2 LINE L2 3205 3257 -15 275 0 29 0 chr3 115544631 115544666 -102492492 + (CA)n Simple_repeat Simple_repeat 1 36 0 465 168 0 31 chr3 115544733 115544840 -102492318 + MER5A DNA MER1_type 4 106 -83 2070 132 0 43 chr3 115544861 115545187 -102491971 + AluSx SINE Alu 1 312 0 204 208 0 21 chr3 115546562 115546610 -102490548 + CT-rich Low_complexity Low_complexity 2 48 0 21 0 0 0 chr3 115546617 115546638 -102490520 + AT_rich Low_complexity Low_complexity 1 21 0 1734 194 0 0 chr3 115546638 115546927 -102490231 - AluJb SINE Alu -23 289 1 413 214 36 18 chr3 115546930 115547042 -102490116 - MIR SINE MIR -62 200 87 2558 65 0 0 chr3 115547042 115547350 -102489808 + AluY SINE Alu 3 310 -1 239 229 0 0 chr3 115547360 115547408 -102489750 - MIR SINE MIR -157 105 58 252 269 82 67 chr3 115547527 115547665 -102489493 + MIR SINE MIR 15 152 -62 3235 149 19 34 chr3 115547665 115548254 -102488904 - LTR1 LTR ERV1 0 785 206 1314 150 12 20 chr3 115548251 115548497 -102488661 - LTR1 LTR ERV1 -533 252 9 * 27 0 0 0 chr3 115548596 115548623 -102488535 + AT_rich Low_complexity Low_complexity 1 27 0 1881 171 3 3 chr3 115548623 115548922 -102488236 - AluJb SINE Alu -13 299 1 256 298 24 0 chr3 115549934 115550018 -102487140 + MLT1D LTR MaLR 5 90 -415 950 193 128 5 chr3 115550093 115550311 -102486847 + MLT1D LTR MaLR 261 505 0 345 224 165 8 chr3 115550645 115550771 -102486387 + MIR SINE MIR 36 177 -65 285 228 13 38 chr3 115551419 115551498 -102485660 + LTR33A LTR ERVL 447 523 0 5006 149 6 15 chr3 115551873 115552351 -102484807 - L1MB3 LINE L1 -2 6181 5713 4057 161 21 48 chr3 115552351 115552583 -102484575 + LTR39 LTR ERV1 1 238 -545 2529 50 3 3 chr3 115552583 115552885 -102484273 - AluY SINE Alu -9 302 1 4057 161 21 48 chr3 115552885 115553457 -102483701 + LTR39 LTR ERV1 238 783 0 5006 149 6 15 chr3 115553457 115553821 -102483337 - L1MB3 LINE L1 -470 5713 5347 204 320 52 20 chr3 115554777 115554930 -102482228 - L2 LINE L2 -693 2621 2464 193 319 0 14 chr3 115554927 115554999 -102482159 + L2 LINE L2 2581 2651 -663 * 237 286 79 17 chr3 115555028 115555206 -102481952 + L2 LINE L2 2454 2642 -672 2110 161 0 0 chr3 115555250 115555561 -102481597 - AluSx SINE Alu -1 311 1 505 279 85 26 chr3 115555583 115555843 -102481315 + L1MC4a LINE L1 5576 5822 -512 2852 180 56 4 chr3 115555912 115556446 -102480712 + MER68 LTR ERV1 1 562 0 1402 220 84 41 chr3 115558309 115558773 -102478385 - L2 LINE L2 -414 2900 2417 596 62 25 0 chr3 115558911 115558992 -102478166 + L1PA7 LINE L1 6071 6153 -1 2225 100 13 3 chr3 115559834 115560134 -102477024 - AluSc SINE Alu -6 303 1 683 267 6 6 chr3 115560647 115560823 -102476335 + MER5B DNA MER1_type 1 176 -2 271 351 18 0 chr3 115560827 115560941 -102476217 + MER5B DNA MER1_type 60 175 -3 350 289 53 0 chr3 115560947 115561061 -102476097 + MIR SINE MIR 128 247 -15 197 303 13 0 chr3 115561714 115561790 -102475368 + MIR SINE MIR 67 143 -119 204 275 38 12 chr3 115563983 115564063 -102473095 - MER91A DNA MER1_type -82 114 33 517 275 20 0 chr3 115564541 115564690 -102472468 - L2 LINE L2 -1 3312 3161 246 300 18 18 chr3 115564815 115564925 -102472233 - MIR3 SINE MIR -18 190 81 744 163 118 127 chr3 115566275 115566606 -102470552 + LTR37A LTR ERV1 71 398 -28 303 293 0 0 chr3 115567435 115567517 -102469641 - L1MC4 LINE L1 -1347 6695 6614 913 169 100 0 chr3 115568134 115568294 -102468864 + MER21B LTR ERV1 328 503 -360 32 26 0 0 chr3 115568294 115568333 -102468825 + AT_rich Low_complexity Low_complexity 1 39 0 466 299 34 6 chr3 115569546 115569723 -102467435 + L1ME4a LINE L1 5520 5701 -420 440 149 0 27 chr3 115569737 115569811 -102467347 - AluJ/FRAM SINE Alu -17 295 224 344 242 169 28 chr3 115569818 115570178 -102466980 + L1ME4a LINE L1 5711 6121 0 225 125 21 21 chr3 115570387 115570435 -102466723 + (CA)n Simple_repeat Simple_repeat 1 48 0 354 266 119 9 chr3 115571252 115571361 -102465797 - Charlie8 DNA MER1_type -2290 127 7 297 169 156 39 chr3 115571716 115571793 -102465365 + L2 LINE L2 3228 3313 0 582 296 66 9 chr3 115573577 115573803 -102463355 - MIR SINE MIR -11 251 13 409 295 154 0 chr3 115574858 115575014 -102462144 + MER91A DNA MER1_type 16 195 -1 640 155 86 0 chr3 115576424 115576540 -102460618 + FLAM_C SINE Alu 2 127 -6 390 154 0 15 chr3 115577424 115577489 -102459669 - LTR40a LTR ERVL -5 514 451 240 233 0 0 chr3 115577732 115577805 -102459353 + (TA)n Simple_repeat Simple_repeat 1 73 0 360 285 145 47 chr3 115577805 115578040 -102459118 - LTR40b LTR ERVL -81 381 124 301 203 25 13 chr3 115579207 115579286 -102457872 - MER116 DNA Mariner 0 80 1 251 353 144 35 chr3 115579361 115579840 -102457318 + L2 LINE L2 2201 2731 -583 977 114 0 0 chr3 115579956 115580087 -102457071 - AluJb SINE Alu -19 293 163 484 263 10 102 chr3 115580089 115580294 -102456864 + MIR SINE MIR 77 262 0 231 263 34 5 chr3 115582244 115582367 -102454791 + MER5A DNA MER1_type 9 189 0 595 189 139 80 chr3 115583679 115583880 -102453278 + MER58C DNA MER1_type 2 214 -1 598 223 340 6 chr3 115584149 115584481 -102452677 - LTR33 LTR ERVL -72 449 7 426 217 22 0 chr3 115584544 115584636 -102452522 + MER45 DNA AcHobo 26 119 -59 805 189 13 7 chr3 115584638 115584830 -102452328 + FRAM SINE Alu 2 194 0 378 211 0 0 chr3 115584832 115584903 -102452255 + MER45 DNA AcHobo 1510 1580 -1 190 250 36 18 chr3 115584918 115584974 -102452184 + MIR SINE MIR 82 138 -70 264 59 0 0 chr3 115586206 115586240 -102450918 + (CA)n Simple_repeat Simple_repeat 2 35 0 397 257 8 53 chr3 115586461 115586630 -102450528 + MIR SINE MIR 31 186 -61 280 322 9 61 chr3 115587213 115587341 -102449817 - MIR SINE MIR -67 141 32 610 322 34 29 chr3 115587926 115588165 -102448993 + LTR16A LTR ERVL 206 445 -5 1154 270 65 23 chr3 115588211 115588640 -102448518 + HERV16 LTR ERVL 76 522 -4474 828 287 55 30 chr3 115588677 115589005 -102448153 + HERV16 LTR ERVL 591 926 -4070 1068 307 61 20 chr3 115589151 115589924 -102447234 + HERV16 LTR ERVL 697 1573 -3423 924 273 32 18 chr3 115589961 115590244 -102446914 + HERV16 LTR ERVL 1691 2035 -3058 306 87 0 0 chr3 115590250 115590296 -102446862 + (CA)n Simple_repeat Simple_repeat 2 47 0 933 297 44 23 chr3 115590335 115590788 -102446370 + HERV16 LTR ERVL 2064 2526 -2470 250 313 0 12 chr3 115590793 115590873 -102446285 + MER21B LTR ERV1 12 90 -773 3099 210 31 8 chr3 115590895 115591539 -102445619 + MER21B LTR ERV1 19 677 -186 238 105 35 35 chr3 115591535 115591592 -102445566 + MER21B LTR ERV1 806 862 -1 * 1018 276 4 14 chr3 115591746 115592021 -102445137 + HERV16 LTR ERVL 2758 3029 -1967 313 250 60 26 chr3 115592040 115592156 -102445002 - MLT1G1 LTR MaLR -36 506 387 213 211 0 0 chr3 115592246 115592284 -102444874 + CT-rich Low_complexity Low_complexity 2 39 0 773 302 17 14 chr3 115592289 115592571 -102444587 - MLT1G1 LTR MaLR -273 322 1 285 322 91 8 chr3 115592589 115592710 -102444448 + MIR SINE MIR 23 153 -109 1457 193 80 46 chr3 115593397 115593811 -102443347 + MSTC LTR MaLR 1 428 0 207 268 0 0 chr3 115595260 115595301 -102441857 + polypyrimidine Low_complexity Low_complexity 3 43 0 252 324 28 0 chr3 115597033 115597104 -102440054 + MIR SINE MIR 20 92 -170 183 80 0 0 chr3 115597240 115597265 -102439893 + (TAGA)n Simple_repeat Simple_repeat 2 26 0 509 246 126 0 chr3 115597310 115597501 -102439657 - LTR37B LTR ERV1 -253 215 1 232 250 173 19 chr3 115597508 115597612 -102439546 + MIR SINE MIR 93 212 -50 2721 106 13 54 chr3 115597616 115598080 -102439078 - MER65A LTR ERV1 0 445 1 2068 150 48 3 chr3 115598850 115599203 -102437955 + LTR32 LTR ERVL 21 389 -82 573 180 18 0 chr3 115599329 115599440 -102437718 + LTR32 LTR ERVL 359 471 0 322 275 0 0 chr3 115599774 115599854 -102437304 - L1ME LINE L1 -541 5629 5550 368 272 133 11 chr3 115599869 115600049 -102437109 - L1ME LINE L1 -752 5394 5193 531 302 94 0 chr3 115600113 115600315 -102436843 + MIR SINE MIR 34 254 -8 554 293 115 13 chr3 115600316 115600784 -102436374 - L1ME LINE L1 -1008 5138 4623 374 254 108 31 chr3 115600867 115600997 -102436161 + MIR3 SINE MIR 2 141 -67 248 287 295 0 chr3 115601036 115601158 -102436000 + MER5A DNA MER1_type 4 161 -28 1355 174 148 16 chr3 115601169 115601479 -102435679 + MLT2D LTR ERVL 4 354 -60 309 100 0 0 chr3 115601512 115601562 -102435596 + (TC)n Simple_repeat Simple_repeat 1 50 0 266 241 63 38 chr3 115601723 115601802 -102435356 - MIR SINE MIR -105 103 23 2504 132 54 98 chr3 115602253 115602792 -102434366 - MLT2B2 LTR ERVL 0 515 1 196 253 0 67 chr3 115603063 115603138 -102434020 - L2 LINE L2 -1344 1970 1901 1918 84 4 7 chr3 115604551 115604824 -102432334 - MER1A DNA MER1_type 0 529 258 513 330 49 22 chr3 115605478 115605745 -102431413 + MLT1J LTR MaLR 238 511 0 1368 203 106 41 chr3 115605840 115606254 -102430904 - MLT2B1 LTR ERVL 0 520 80 1117 184 43 32 chr3 115606254 115606536 -102430622 + THE1C LTR MaLR 1 285 -90 300 169 91 0 chr3 115606550 115606627 -102430531 - MLT2B1 LTR ERVL -434 86 3 288 0 0 0 chr3 115607017 115607049 -102430109 + (CA)n Simple_repeat Simple_repeat 2 33 0 216 67 0 0 chr3 115607429 115607459 -102429699 + (CA)n Simple_repeat Simple_repeat 1 30 0 352 248 197 8 chr3 115607659 115607776 -102429382 + MER5A DNA MER1_type 19 157 -32 862 186 5 42 chr3 115607776 115607969 -102429189 - MER5A DNA MER1_type -3 186 1 230 302 58 23 chr3 115608159 115608245 -102428913 + L2 LINE L2 3125 3213 -59 204 216 0 0 chr3 115608265 115608302 -102428856 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 2274 171 58 5 chr3 115608842 115609276 -102427882 + LTR32 LTR ERVL 15 471 0 210 143 0 0 chr3 115609748 115609783 -102427375 + (A)n Simple_repeat Simple_repeat 1 35 0 445 231 60 0 chr3 115610554 115610671 -102426487 + MIR SINE MIR 95 218 -44 228 361 0 0 chr3 115610700 115610783 -102426375 - MIR3 SINE MIR -24 184 102 372 279 134 23 chr3 115610874 115611046 -102426112 - MIR SINE MIR -71 191 1 770 246 4 102 chr3 115611708 115611972 -102425186 + MIR SINE MIR 25 262 0 193 306 200 0 chr3 115611975 115612060 -102425098 + MIR SINE MIR 161 262 0 455 311 112 29 chr3 115614153 115614359 -102422799 + MIR SINE MIR 18 240 -22 324 0 0 0 chr3 115614364 115614400 -102422758 + (CA)n Simple_repeat Simple_repeat 1 36 0 3025 33 14 0 chr3 115615033 115615398 -102421760 - L1PA5 LINE L1 0 6154 5785 790 40 0 0 chr3 115615398 115615498 -102421660 + L1PA5 LINE L1 5699 5798 -356 284 295 147 6 chr3 115615744 115615900 -102421258 - MIR SINE MIR -26 236 59 696 295 66 21 chr3 115616155 115616396 -102420762 + MIR SINE MIR 5 256 -6 1066 76 0 0 chr3 115617753 115617885 -102419273 + AluY SINE Alu 1 132 -179 24 0 0 0 chr3 115617885 115617909 -102419249 + AT_rich Low_complexity Low_complexity 1 24 0 207 130 0 43 chr3 115618651 115618697 -102418461 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 688 299 53 43 chr3 115618698 115619578 -102417580 + L1MEc LINE L1 785 1673 -4723 333 308 125 20 chr3 115619718 115620319 -102416839 + L1MEc LINE L1 1696 2359 -4037 608 284 101 0 chr3 115620364 115620572 -102416586 + MIR SINE MIR 34 262 0 589 344 86 0 chr3 115620633 115620854 -102416304 + MIR SINE MIR 15 254 -8 * 1024 257 26 122 chr3 115620837 115620882 -102416276 + L2 LINE L2 2669 2717 -596 2340 107 0 0 chr3 115620882 115621182 -102415976 + AluSq SINE Alu 1 300 -13 1024 257 26 122 chr3 115621182 115621857 -102415301 + L2 LINE L2 2717 3313 0 340 376 99 16 chr3 115621950 115622192 -102414966 + L2 LINE L2 3009 3270 -2 222 346 13 13 chr3 115622753 115622831 -102414327 + MIR SINE MIR 50 127 -81 292 335 95 19 chr3 115623056 115623214 -102413944 - L2 LINE L2 -4 3268 3099 846 321 64 39 chr3 115623271 115624051 -102413107 - L2 LINE L2 -4 3309 2507 28 29 0 0 chr3 115624279 115624314 -102412844 + AT_rich Low_complexity Low_complexity 1 35 0 197 119 24 0 chr3 115624840 115624882 -102412276 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 837 256 58 12 chr3 115626100 115626342 -102410816 - MIR SINE MIR 0 262 10 667 330 108 31 chr3 115626608 115627388 -102409770 - L2 LINE L2 -4 3268 2367 2836 161 68 33 chr3 115627480 115628221 -102408937 + LTR1B LTR ERV1 1 785 0 2418 159 26 12 chr3 115628359 115628781 -102408377 + MSTA LTR MaLR 1 428 0 378 203 258 37 chr3 115628907 115629070 -102408088 - MIR3 SINE MIR -7 201 3 25 0 0 0 chr3 115630261 115630286 -102406872 + AT_rich Low_complexity Low_complexity 1 25 0 1597 89 45 18 chr3 115630501 115630725 -102406433 - MER30 DNA MER1_type 0 230 1 477 270 113 13 chr3 115632208 115632367 -102404791 + MIR SINE MIR 88 262 0 602 287 40 16 chr3 115632575 115632929 -102404229 + L1ME4a LINE L1 5531 5905 -216 240 253 52 45 chr3 115633866 115633899 -102403259 - L1MA10 LINE L1 0 6334 6302 2614 234 71 20 chr3 115633899 115634691 -102402467 - L1ME1 LINE L1 -21 6145 5314 * 4625 200 21 26 chr3 115634687 115635180 -102401978 - L1MC3 LINE L1 0 7785 7291 3838 78 8 10 chr3 115635180 115635692 -102401466 + MER9 LTR ERVK 1 511 0 4625 200 21 26 chr3 115635692 115636306 -102400852 - L1MC3 LINE L1 -494 7291 6684 356 221 0 107 chr3 115636303 115636452 -102400706 - L1ME1 LINE L1 -812 5334 5202 * 865 240 48 35 chr3 115637517 115637830 -102399328 - MER46C DNA MER2_type -21 317 1 1262 200 16 5 chr3 115638014 115638313 -102398845 - MER61B LTR ERV1 -29 396 1 481 175 157 20 chr3 115638335 115638592 -102398566 - Zaphod DNA AcHobo -93 3938 3595 2073 223 96 41 chr3 115638604 115639403 -102397755 - Zaphod DNA AcHobo -3087 944 102 2500 46 0 3 chr3 115639475 115639780 -102397378 + AluY SINE Alu 1 304 -7 807 203 146 0 chr3 115639855 115640047 -102397111 + MER58A DNA MER1_type 5 224 0 2562 23 3 13 chr3 115640052 115640379 -102396779 - AluY SINE Alu 0 311 2 321 274 156 15 chr3 115641200 115641335 -102395823 + MIR SINE MIR 45 198 -64 1433 225 104 21 chr3 115642066 115642497 -102394661 - MLT1C LTR MaLR 0 467 1 4512 149 20 20 chr3 115642788 115643205 -102393953 + LTR39 LTR ERV1 1 420 -363 2181 112 0 0 chr3 115643205 115643530 -102393628 - AluSx SINE Alu 0 312 1 4512 149 20 20 chr3 115643530 115643895 -102393263 + LTR39 LTR ERV1 419 783 0 748 210 79 47 chr3 115645208 115645422 -102391736 + MIR SINE MIR 22 242 -20 309 289 34 122 chr3 115647185 115647448 -102389710 + MIR SINE MIR 10 249 -13 300 131 12 36 chr3 115647842 115647926 -102389232 - L1ME4a LINE L1 -1 6120 6039 1413 155 14 18 chr3 115648041 115648344 -102388814 + MER61B LTR ERV1 1 396 -29 884 201 20 61 chr3 115648435 115648729 -102388429 - L1MC5 LINE L1 -50 7911 7630 804 263 14 11 chr3 115648824 115649132 -102388026 + L1MC5 LINE L1 6555 6866 -946 * 2408 211 73 20 chr3 115649130 115649783 -102387375 - L1P LINE L1 -2257 3889 3202 * 5485 206 14 13 chr3 115649775 115651118 -102386040 + L1P LINE L1 3883 5226 -920 256 156 16 16 chr3 115651101 115651165 -102385993 + L1MC5 LINE L1 7483 7546 -415 * 663 301 35 25 chr3 115651685 115651967 -102385191 + MER102b DNA MER1_type 23 307 -34 238 318 0 0 chr3 115652084 115652150 -102385008 - L2 LINE L2 -458 2856 2791 985 291 25 47 chr3 115652161 115652563 -102384595 + MER115 DNA AcHobo 8 400 -293 224 359 21 31 chr3 115652680 115652872 -102384286 - L2 LINE L2 -556 2758 2569 261 320 25 0 chr3 115653720 115653842 -102383316 - LTR16A1 LTR ERVL -332 125 1 265 330 68 0 chr3 115653961 115654064 -102383094 + MIR SINE MIR 36 145 -63 764 224 166 14 chr3 115654261 115654484 -102382674 + MIR SINE MIR 3 259 -3 207 125 0 0 chr3 115655300 115655340 -102381818 + (CA)n Simple_repeat Simple_repeat 1 40 0 528 319 115 36 chr3 115657004 115657606 -102379552 + L2 LINE L2 1749 2397 -917 350 331 101 0 chr3 115657658 115657806 -102379352 - MER91A DNA MER1_type -28 168 6 435 253 62 0 chr3 115657978 115658124 -102379034 - Charlie7 DNA MER1_type -2457 155 1 205 298 71 132 chr3 115658183 115658659 -102378499 + L2 LINE L2 2825 3271 -1 247 337 48 0 chr3 115658683 115658766 -102378392 + L3 LINE CR1 1388 1474 -103 486 215 0 32 chr3 115660011 115660104 -102377054 + MER5A DNA MER1_type 2 91 -98 421 171 53 0 chr3 115660184 115660260 -102376898 + MER5A DNA MER1_type 81 160 -29 301 309 36 22 chr3 115661278 115661417 -102375741 + MLT1L LTR MaLR 420 560 -55 21 0 0 0 chr3 115661652 115661673 -102375485 + AT_rich Low_complexity Low_complexity 1 21 0 221 310 136 27 chr3 115661700 115661884 -102375274 - MIR SINE MIR 0 262 59 2174 87 42 0 chr3 115661898 115662184 -102374974 - AluSx SINE Alu -14 298 1 23 33 0 0 chr3 115662568 115662598 -102374560 + AT_rich Low_complexity Low_complexity 1 30 0 7069 12 0 0 chr3 115663890 115664726 -102372432 - L1HS LINE L1 -1 6154 5319 19920 26 0 0 chr3 115664726 115667213 -102369945 + L1M LINE L1 2829 5316 -838 282 56 0 0 chr3 115667430 115667466 -102369692 + (CA)n Simple_repeat Simple_repeat 2 37 0 1897 222 65 34 chr3 115667520 115668078 -102369080 - MLT1E2 LTR MaLR 0 626 52 657 318 19 31 chr3 115669830 115670154 -102367004 + LTR16B LTR ERVL 133 452 -12 457 348 21 55 chr3 115670593 115670883 -102366275 - LTR67 LTR ERVL -157 400 121 265 236 0 0 chr3 115671313 115671368 -102365790 - L2 LINE L2 -11 3302 3248 2297 107 0 0 chr3 115672177 115672487 -102364671 + AluY SINE Alu 1 310 -1 255 291 120 70 chr3 115672490 115672648 -102364510 + MIR SINE MIR 47 212 -50 2186 112 0 35 chr3 115672654 115672966 -102364192 + AluSx SINE Alu 5 305 -7 2079 123 3 7 chr3 115673062 115673083 -102364075 - AluJb SINE Alu -7 305 285 234 0 0 0 chr3 115673083 115673109 -102364049 + (TG)n Simple_repeat Simple_repeat 2 27 0 2079 123 3 7 chr3 115673109 115673389 -102363769 - AluJb SINE Alu -27 285 5 23 0 0 0 chr3 115673399 115673422 -102363736 + AT_rich Low_complexity Low_complexity 1 23 0 215 122 0 24 chr3 115673777 115673818 -102363340 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 1654 153 76 55 chr3 115673932 115674299 -102362859 + THE1C LTR MaLR 1 375 0 630 236 55 12 chr3 115674375 115674540 -102362618 + MER5B DNA MER1_type 7 178 0 395 308 87 6 chr3 115674625 115674797 -102362361 - L1ME3A LINE L1 -221 6367 6182 646 299 95 31 chr3 115674803 115675456 -102361702 - L1ME3A LINE L1 -1586 4978 4284 335 262 70 43 chr3 115675499 115675686 -102361472 - HAL1 LINE L1 -9 2498 2307 * 1743 238 100 44 chr3 115675681 115676259 -102360899 - L1MCb LINE L1 -3916 2829 2285 2441 71 0 0 chr3 115676259 115676553 -102360605 - AluY SINE Alu -17 294 1 1743 238 100 44 chr3 115676553 115677220 -102359938 - L1MCb LINE L1 -4460 2285 1560 1941 185 75 40 chr3 115677264 115677392 -102359766 + L1PB4 LINE L1 5660 5782 -374 198 0 0 0 chr3 115677392 115677414 -102359744 + (CA)n Simple_repeat Simple_repeat 2 23 0 1941 185 75 40 chr3 115677414 115677765 -102359393 + L1PB4 LINE L1 5782 6156 0 1913 213 65 21 chr3 115677804 115678256 -102358902 - L1MCb LINE L1 -4851 1194 828 1683 165 77 40 chr3 115678256 115678608 -102358550 + MLT1A1 LTR MaLR 1 365 0 1913 213 65 21 chr3 115678608 115678880 -102358278 - L1MCb LINE L1 -5217 828 570 1387 239 81 59 chr3 115679002 115679546 -102357612 - L1MCb LINE L1 -5489 556 1 643 281 57 57 chr3 115679591 115679926 -102357232 - L1MEd LINE L1 -5773 346 12 225 269 39 96 chr3 115681101 115681257 -102355901 - MIR SINE MIR -41 221 75 276 280 133 35 chr3 115681546 115681689 -102355469 - MIR3 SINE MIR -32 176 20 207 0 0 0 chr3 115681792 115681815 -102355343 + (A)n Simple_repeat Simple_repeat 1 23 0 5075 98 4 5 chr3 115682319 115683097 -102354061 + L1PB1 LINE L1 5374 6150 -1 530 225 28 28 chr3 115683200 115683342 -102353816 - L2 LINE L2 -14 3299 3158 511 290 7 26 chr3 115683397 115683552 -102353606 - MIR SINE MIR -100 162 11 2190 159 3 16 chr3 115683557 115683927 -102353231 + MLT1A1 LTR MaLR 1 365 0 257 363 19 57 chr3 115683967 115684179 -102352979 - L2 LINE L2 -122 3150 2947 316 333 80 27 chr3 115684213 115684363 -102352795 - L2 LINE L2 -457 2857 2700 2105 116 3 3 chr3 115684363 115684655 -102352503 - AluSx SINE Alu -20 292 1 203 290 30 60 chr3 115684944 115685044 -102352114 - L2 LINE L2 -8 3305 3209 267 227 0 0 chr3 115685689 115685755 -102351403 + (TA)n Simple_repeat Simple_repeat 2 67 0 408 214 48 40 chr3 115686943 115687069 -102350089 + MER65A LTR ERV1 1 127 -318 903 185 14 24 chr3 115688501 115688712 -102348446 - MER3 DNA MER1_type 0 209 1 492 300 139 0 chr3 115688972 115689152 -102348006 + MIR SINE MIR 45 249 -13 213 244 0 0 chr3 115689229 115689270 -102347888 + L2 LINE L2 3265 3305 -8 208 169 17 17 chr3 115689307 115689366 -102347792 + CT-rich Low_complexity Low_complexity 1 59 0 918 173 0 0 chr3 115689366 115689516 -102347642 - AluJo SINE Alu -1 311 162 1309 141 54 8 chr3 115689521 115689762 -102347396 + MER50 LTR ERV1 7 258 -476 515 138 0 0 chr3 115689756 115689836 -102347322 - MER50 LTR ERV1 -407 327 248 * 227 258 81 0 chr3 115689832 115689894 -102347264 - MER50 LTR ERV1 -654 80 14 * 403 217 0 76 chr3 115689904 115689996 -102347162 - AluJo SINE Alu -146 166 82 2926 87 11 54 chr3 115690563 115691023 -102346135 + MLT2A1 LTR ERVL 5 444 0 254 333 65 0 chr3 115691470 115691563 -102345595 - MER5B DNA MER1_type -72 106 8 878 134 0 8 chr3 115692024 115692143 -102345015 + FLAM_C SINE Alu 1 118 -15 506 25 37 12 chr3 115692158 115692239 -102344919 + (TAGA)n Simple_repeat Simple_repeat 3 85 0 226 162 0 0 chr3 115692325 115692362 -102344796 - L1ME LINE L1 -492 5670 5634 2778 201 12 1 chr3 115692383 115692916 -102344242 + L1ME1 LINE L1 5639 6333 -1 983 268 82 68 chr3 115693985 115694570 -102342588 - MLT1G1 LTR MaLR 0 595 3 28 29 0 0 chr3 115694765 115694800 -102342358 + AT_rich Low_complexity Low_complexity 1 35 0 270 329 49 21 chr3 115695071 115695214 -102341944 - LTR68 LTR ERV1 -303 437 291 3715 165 6 15 chr3 115695630 115696279 -102340879 - L1MB8 LINE L1 -57 6121 5479 222 352 11 44 chr3 115696418 115696509 -102340649 - MIR SINE MIR -84 124 37 953 288 47 68 chr3 115697399 115697947 -102339211 + MER34 LTR ERV1 1 537 -5 1872 100 0 27 chr3 115698477 115698780 -102338378 - AluSx SINE Alu 0 325 30 1509 124 108 27 chr3 115699010 115699269 -102337889 + Tigger3(Golem) DNA MER2_type 1 280 -2749 207 276 71 105 chr3 115699801 115700040 -102337118 + L2 LINE L2 2992 3222 -50 1692 245 60 50 chr3 115700082 115700555 -102336603 - L1ME3A LINE L1 -22 6148 5666 1870 164 102 15 chr3 115700555 115700897 -102336261 - MER93b LTR ERV1 -1 372 1 1692 245 60 50 chr3 115700897 115701028 -102336130 - L1ME3A LINE L1 -504 5666 5538 4873 101 45 18 chr3 115701903 115702067 -102335091 - Tigger3b DNA MER2_type -1922 1106 948 2297 109 0 0 chr3 115702067 115702370 -102334788 + AluSq SINE Alu 1 303 -10 4873 101 45 18 chr3 115702370 115702947 -102334211 - Tigger3b DNA MER2_type -2080 948 345 2328 84 7 0 chr3 115702951 115703248 -102333910 - AluSp SINE Alu -12 301 3 318 274 156 15 chr3 115704070 115704205 -102332953 + MIR SINE MIR 45 198 -64 1651 218 104 21 chr3 115704936 115705367 -102331791 - MLT1C LTR MaLR 0 467 1 4882 149 20 20 chr3 115705658 115706075 -102331083 + LTR39 LTR ERV1 1 420 -363 2181 112 0 0 chr3 115706075 115706404 -102330754 - AluSx SINE Alu 0 312 1 4882 149 20 20 chr3 115706404 115706769 -102330389 + LTR39 LTR ERV1 419 783 0 731 210 79 47 chr3 115708082 115708296 -102328862 + MIR SINE MIR 22 242 -20 679 349 141 33 chr3 115810377 115811289 -102225869 + L2 LINE L2 1925 2935 -379 746 288 0 23 chr3 115811298 115811513 -102225645 + HERVL LTR ERVL 4665 4874 -780 7344 173 34 6 chr3 115811985 115813443 -102223715 + L1P LINE L1 3834 5331 -815 361 255 11 0 chr3 115813563 115813657 -102223501 + MLT1D LTR MaLR 407 501 -4 285 346 50 0 chr3 115814935 115815036 -102222122 + MER82 DNA MER2_type 1 106 -547 23 0 0 0 chr3 115815786 115815809 -102221349 + AT_rich Low_complexity Low_complexity 1 23 0 204 40 0 0 chr3 115816184 115816209 -102220949 + (CA)n Simple_repeat Simple_repeat 2 26 0 182 305 60 93 chr3 115816739 115816890 -102220268 + L2 LINE L2 3127 3272 0 3337 112 45 6 chr3 115817188 115817982 -102219176 + LOR1-int LTR ERV1 2132 2997 -5123 22 35 0 0 chr3 115817999 115818028 -102219130 + AT_rich Low_complexity Low_complexity 1 29 0 1716 77 0 46 chr3 115819779 115820039 -102217119 - LTR7 LTR ERV1 -202 248 1 5598 130 27 8 chr3 115820039 115821355 -102215803 - L1PBa LINE L1 -4672 2191 704 2476 163 78 22 chr3 115822054 115822608 -102214550 - L1MC3 LINE L1 -175 7610 7026 6538 113 24 7 chr3 115822718 115822764 -102214394 - L1P LINE L1 -3779 2367 2323 207 0 0 0 chr3 115822764 115822787 -102214371 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6538 113 24 7 chr3 115822787 115823788 -102213370 - L1P LINE L1 -3823 2323 1302 429 155 134 0 chr3 115824649 115824746 -102212412 + L1 LINE L1 3073 3182 -2964 2009 243 12 5 chr3 115825367 115825948 -102211210 + L1 LINE L1 3137 3721 -2425 1622 269 14 4 chr3 115825945 115826450 -102210708 + L1 LINE L1 2583 3092 -3054 * 380 320 164 11 chr3 115826853 115827206 -102209952 - MLT1H LTR MaLR -118 431 25 360 0 0 0 chr3 115827690 115827730 -102209428 + (TA)n Simple_repeat Simple_repeat 2 41 0 930 218 91 21 chr3 115828451 115828790 -102208368 - MER69 DNA AcHobo -1 2525 2163 1070 278 49 0 chr3 115828813 115829119 -102208039 - MER69 DNA AcHobo -697 529 209 252 0 0 0 chr3 115929554 115929582 -102107576 + (GA)n Simple_repeat Simple_repeat 2 29 0 657 245 29 69 chr3 115930078 115930323 -102106835 - MER46A DNA MER2_type -1 235 1 223 333 0 0 chr3 115930363 115930417 -102106741 + L2 LINE L2 3025 3078 -194 23 33 0 0 chr3 115930471 115930501 -102106657 + AT_rich Low_complexity Low_complexity 1 30 0 236 182 23 0 chr3 115930932 115930976 -102106182 + LTR33 LTR ERVL 477 521 0 971 190 73 100 chr3 115930985 115931391 -102105767 + MER39 LTR ERV1 6 403 -162 1776 133 73 57 chr3 115931391 115931760 -102105398 + THE1C LTR MaLR 1 375 0 971 190 73 100 chr3 115931760 115931918 -102105240 + MER39 LTR ERV1 403 564 -1 4750 127 70 20 chr3 115932491 115933360 -102103798 + MER49 LTR ERV1 1 913 -10 268 356 83 49 chr3 115933544 115933808 -102103350 + L2 LINE L2 3000 3272 0 200 128 26 0 chr3 115934048 115934087 -102103071 + (TA)n Simple_repeat Simple_repeat 2 41 0 261 341 8 56 chr3 115936661 115936787 -102100371 + MER5A DNA MER1_type 68 187 -2 693 292 97 0 chr3 115936970 115937196 -102099962 + MIR SINE MIR 15 262 0 893 204 29 69 chr3 115938816 115939061 -102098097 - MER46A DNA MER2_type -1 235 1 224 315 0 0 chr3 115939101 115939155 -102098003 + L2 LINE L2 3025 3078 -194 29 90 0 0 chr3 115939209 115939287 -102097871 + AT_rich Low_complexity Low_complexity 1 78 0 585 272 41 62 chr3 115939391 115939634 -102097524 - MIR SINE MIR -1 261 24 599 267 58 0 chr3 115939761 115939952 -102097206 - MIR SINE MIR -12 250 49 200 244 95 26 chr3 115940810 115940940 -102096218 - MIR3 SINE MIR -63 145 9 254 220 0 0 chr3 115942001 115942051 -102095107 + L2 LINE L2 3264 3313 0 23 33 0 0 chr3 115944740 115944770 -102092388 + AT_rich Low_complexity Low_complexity 1 30 0 245 238 20 60 chr3 115944822 115944973 -102092185 + L1ME4a LINE L1 5973 6117 -4 24 0 0 0 chr3 115946590 115946614 -102090544 + AT_rich Low_complexity Low_complexity 1 24 0 29 28 0 0 chr3 115946639 115946675 -102090483 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr3 115947247 115947271 -102089887 + AT_rich Low_complexity Low_complexity 1 24 0 2280 75 0 20 chr3 115947271 115947564 -102089594 + AluSc SINE Alu 1 287 -22 23342 28 1 8 chr3 115948712 115952326 -102084832 + L1PA3 LINE L1 2576 6155 0 192 267 138 43 chr3 115952681 115952797 -102084361 + L2 LINE L2 3187 3313 0 32 0 0 0 chr3 115953423 115953455 -102083703 + GC_rich Low_complexity Low_complexity 1 32 0 198 340 109 84 chr3 115954099 115954288 -102082870 + L2 LINE L2 2949 3149 -123 1831 194 88 3 chr3 115954288 115954653 -102082505 + MSTD LTR MaLR 1 396 0 198 340 109 84 chr3 115954653 115954748 -102082410 + L2 LINE L2 3149 3240 -32 349 296 151 0 chr3 115954875 115955034 -102082124 - MIR SINE MIR -47 215 33 2296 142 79 2 chr3 115956059 115956516 -102080642 - L1MA3 LINE L1 0 6305 5814 324 293 6 40 chr3 115956583 115956820 -102080338 + CT-rich Low_complexity Low_complexity 1 228 0 224 343 0 30 chr3 115956792 115956958 -102080200 + C-rich Low_complexity Low_complexity 1 161 0 * 23 0 0 0 chr3 115957272 115957295 -102079863 + AT_rich Low_complexity Low_complexity 1 23 0 394 256 124 22 chr3 115957387 115957524 -102079634 - MIR SINE MIR -102 160 10 328 284 148 22 chr3 115957652 115957835 -102079323 + MIR SINE MIR 32 237 -25 222 208 0 0 chr3 115958561 115958614 -102078544 + GA-rich Low_complexity Low_complexity 2 54 0 23 33 0 0 chr3 115958996 115959026 -102078132 + AT_rich Low_complexity Low_complexity 1 30 0 216 323 8 23 chr3 115959469 115959602 -102077556 + CT-rich Low_complexity Low_complexity 2 132 0 718 256 72 88 chr3 115959872 115960317 -102076841 - MLT1H1 LTR MaLR 0 555 118 298 387 32 8 chr3 115960390 115960514 -102076644 + L2 LINE L2 3138 3264 -8 626 312 25 20 chr3 115961248 115961447 -102075711 + MIR3 SINE MIR 3 202 -6 665 297 53 0 chr3 115961606 115961815 -102075343 - MIR SINE MIR -1 261 42 403 272 139 11 chr3 115962297 115962477 -102074681 - MIR SINE MIR -55 207 5 37 39 0 0 chr3 115962620 115962671 -102074487 + AT_rich Low_complexity Low_complexity 1 51 0 2267 100 0 0 chr3 115962742 115963033 -102074125 - AluSx SINE Alu -21 291 1 234 0 0 0 chr3 115963045 115963071 -102074087 + (TTG)n Simple_repeat Simple_repeat 2 27 0 332 324 156 12 chr3 115963307 115963480 -102073678 + MIR SINE MIR 61 258 -4 220 294 0 29 chr3 115963637 115963705 -102073453 + L2 LINE L2 3206 3271 -1 975 242 18 9 chr3 115963891 115964118 -102073040 + L3 LINE CR1 769 997 -580 1162 149 16 11 chr3 115964149 115964337 -102072821 - MER5A DNA MER1_type 0 189 1 221 324 0 14 chr3 115964480 115964551 -102072607 - MIR SINE MIR 0 262 193 624 259 94 25 chr3 115964561 115964762 -102072396 - MIR SINE MIR 0 262 48 520 237 91 52 chr3 115964883 115965282 -102071876 + L1MA10 LINE L1 5761 6322 -5 25 95 0 0 chr3 115965594 115965668 -102071490 + AT_rich Low_complexity Low_complexity 1 74 0 2046 148 0 7 chr3 115966756 115967059 -102070099 - AluJb SINE Alu -11 301 1 467 228 31 109 chr3 115967318 115967511 -102069647 + MER45A DNA AcHobo 1 178 0 26 0 0 49 chr3 115967669 115967685 -102069473 + AT_rich Low_complexity Low_complexity 1 16 -23 2126 129 3 0 chr3 115967685 115967972 -102069186 + AluSx SINE Alu 1 288 -24 26 0 0 49 chr3 115967972 115967996 -102069162 + AT_rich Low_complexity Low_complexity 16 39 0 1611 201 0 10 chr3 115968015 115968314 -102068844 + AluJb SINE Alu 12 307 -5 1973 152 7 0 chr3 115969264 115969553 -102067605 + AluSx SINE Alu 1 291 -21 1577 190 0 32 chr3 115969611 115969921 -102067237 + AluJo SINE Alu 1 300 -12 1809 171 4 0 chr3 115970106 115970410 -102066748 + AluJo SINE Alu 1 305 0 21 71 0 0 chr3 115970498 115970540 -102066618 + AT_rich Low_complexity Low_complexity 1 42 0 187 313 75 25 chr3 115970593 115970673 -102066485 - L2 LINE L2 -21 3251 3168 932 283 71 9 chr3 115970762 115971087 -102066071 - LTR16C LTR ERVL 0 491 147 213 345 189 23 chr3 115971549 115971989 -102065169 - L2 LINE L2 -576 2738 2226 31024 97 13 58 chr3 115972157 115978611 -102058547 + L1PA6 LINE L1 1 6153 -1 225 132 0 0 chr3 115978644 115978682 -102058476 + (CAT)n Simple_repeat Simple_repeat 2 39 0 438 240 198 0 chr3 115979087 115979208 -102057950 - MIR3 SINE MIR -13 195 51 268 184 68 117 chr3 115979472 115979575 -102057583 + L2 LINE L2 3174 3271 -1 1555 198 55 27 chr3 115980064 115980468 -102056690 + L1MA9 LINE L1 5860 6274 -38 3881 205 59 20 chr3 115980685 115980846 -102056312 + L1MB8 LINE L1 4334 4487 -1691 2336 85 0 3 chr3 115980846 115981140 -102056018 + AluY SINE Alu 1 293 -18 3881 205 59 20 chr3 115981140 115982410 -102054748 + L1MB8 LINE L1 4487 5834 -344 684 205 16 0 chr3 115982410 115982537 -102054621 + FLAM_A SINE Alu 1 129 -4 3881 205 59 20 chr3 115982537 115982896 -102054262 + L1MB8 LINE L1 5834 6178 0 25 0 0 0 chr3 115982903 115982928 -102054230 + AT_rich Low_complexity Low_complexity 1 25 0 1637 173 17 17 chr3 115982990 115983291 -102053867 - AluJo SINE Alu -11 301 1 2673 171 53 10 chr3 115983627 115984119 -102053039 + MLT2B2 LTR ERVL 1 513 -2 1262 189 135 27 chr3 115984228 115984644 -102052514 - MLT1C LTR MaLR 0 467 5 643 180 99 19 chr3 115984920 115985081 -102052077 - MER5B DNA MER1_type 0 178 5 367 117 0 0 chr3 115985162 115985222 -102051936 - Alu SINE Alu -2 298 239 372 161 93 124 chr3 115985224 115985385 -102051773 + MER106A DNA MER1_type 80 235 -1 338 280 65 9 chr3 115985393 115985500 -102051658 - MER5A DNA MER1_type -21 168 56 * 406 249 90 31 chr3 115985496 115985678 -102051480 - MIR SINE MIR -4 258 16 1664 172 58 0 chr3 115986078 115986369 -102050789 + AluJb SINE Alu 1 308 -4 1703 183 43 43 chr3 115986554 115987014 -102050144 - Charlie4a DNA MER1_type -46 462 3 358 239 24 138 chr3 115987286 115987453 -102049705 - MER5A DNA MER1_type -22 167 20 215 304 43 104 chr3 115988547 115988777 -102048381 - MIR SINE MIR -34 228 13 573 206 152 59 chr3 115988782 115988986 -102048172 + MER58A DNA MER1_type 1 223 -1 23 68 0 0 chr3 115989104 115989148 -102048010 + AT_rich Low_complexity Low_complexity 1 44 0 355 316 43 22 chr3 115990640 115990779 -102046379 - L2 LINE L2 -6 3307 3166 1629 177 7 14 chr3 115991142 115991425 -102045733 - AluJb SINE Alu -19 293 13 27 49 0 0 chr3 115991806 115991847 -102045311 + AT_rich Low_complexity Low_complexity 1 41 0 1488 272 49 6 chr3 115991854 115992387 -102044771 + L1M4 LINE L1 3268 3823 -2323 1583 203 0 14 chr3 115992387 115992678 -102044480 - AluJo SINE Alu -10 302 16 234 0 0 0 chr3 115992944 115992970 -102044188 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 271 280 81 27 chr3 115993440 115993701 -102043457 - L1MEc LINE L1 -4579 1817 1543 987 288 131 47 chr3 115993828 115994599 -102042559 - L1MEc LINE L1 -4881 1324 489 840 139 0 16 chr3 115995119 115995248 -102041910 + FLAM_C SINE Alu 1 127 -6 1657 234 101 72 chr3 115995267 115995989 -102041169 + LTR41 LTR ERVL 25 767 -6 389 178 0 0 chr3 115996078 115996151 -102041007 - MER116 DNA Mariner -6 74 2 816 261 132 8 chr3 115996641 115997132 -102040026 - L1ME4a LINE L1 -76 6045 5494 2236 127 0 0 chr3 115997411 115997718 -102039440 - AluSq SINE Alu -6 307 1 1112 142 6 0 chr3 115998777 115998946 -102038212 + AluSq SINE Alu 132 301 -12 321 311 153 0 chr3 115998997 115999219 -102037939 - LTR67 LTR ERVL -299 258 3 361 323 138 17 chr3 115999536 115999833 -102037325 - LTR16C LTR ERVL -7 484 152 1693 170 3 28 chr3 116001522 116001842 -102035316 + AluJb SINE Alu 1 313 0 2176 145 0 3 chr3 116001928 116002239 -102034919 - AluSx SINE Alu -2 310 1 265 250 13 0 chr3 116002244 116002320 -102034838 - L1ME4a LINE L1 -205 5916 5840 22 35 0 0 chr3 116002343 116002372 -102034786 + AT_rich Low_complexity Low_complexity 1 29 0 294 161 0 0 chr3 116002509 116002571 -102034587 + L1MB7 LINE L1 6121 6182 -2 21 0 0 0 chr3 116002653 116002674 -102034484 + AT_rich Low_complexity Low_complexity 1 21 0 5009 37 2 2 chr3 116003256 116003856 -102033302 + L1PA5 LINE L1 5555 6154 0 1651 154 56 14 chr3 116003987 116004273 -102032885 - AluJo SINE Alu -3 309 12 440 286 97 19 chr3 116004336 116004490 -102032668 - MIR3 SINE MIR -6 202 37 267 278 87 40 chr3 116005823 116005949 -102031209 + MIR SINE MIR 11 142 -120 267 275 14 0 chr3 116006303 116006372 -102030786 + L2 LINE L2 3239 3308 -5 299 269 77 29 chr3 116006629 116006733 -102030425 + MLT1J2 LTR MaLR 60 168 -282 318 248 76 38 chr3 116006969 116007074 -102030084 + MLT1J2 LTR MaLR 60 168 -282 252 175 32 32 chr3 116008141 116008204 -102028954 + LTR50 LTR ERVL 732 794 -1 189 309 122 36 chr3 116008204 116008343 -102028815 + L2 LINE L2 2930 3080 -192 531 222 0 0 chr3 116008697 116008805 -102028353 - MER58B DNA MER1_type -15 326 219 238 224 216 17 chr3 116009398 116009514 -102027644 - MIR3 SINE MIR -54 154 16 843 266 21 62 chr3 116010039 116010328 -102026830 + L2 LINE L2 3035 3311 -2 518 296 150 19 chr3 116010461 116010674 -102026484 - MIR SINE MIR -17 245 5 1849 169 0 7 chr3 116011543 116011827 -102025331 - AluJb SINE Alu -30 282 1 243 0 0 0 chr3 116011843 116011870 -102025288 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 355 167 313 0 chr3 116011873 116011969 -102025189 - FLAM_C SINE Alu -7 126 1 1776 145 33 36 chr3 116012499 116012802 -102024356 + AluJb SINE Alu 3 304 -8 22 70 0 0 chr3 116012997 116013040 -102024118 + AT_rich Low_complexity Low_complexity 1 43 0 649 230 72 50 chr3 116013111 116013333 -102023825 - MIR SINE MIR -34 228 2 341 288 136 33 chr3 116014018 116014202 -102022956 + L2 LINE L2 3070 3272 0 1690 168 21 24 chr3 116014687 116014978 -102022180 + AluSx SINE Alu 3 292 -20 1683 167 34 24 chr3 116015564 116015857 -102021301 + AluJb SINE Alu 13 308 -4 247 310 0 0 chr3 116016556 116016627 -102020531 + L3 LINE CR1 193 263 -1314 259 291 136 18 chr3 116016941 116017051 -102020107 + L3 LINE CR1 285 407 -1170 21 36 0 0 chr3 116017632 116017660 -102019498 + AT_rich Low_complexity Low_complexity 1 28 0 503 319 98 13 chr3 116018029 116018264 -102018894 + L3 LINE CR1 534 788 -789 770 294 48 4 chr3 116018309 116018540 -102018618 - MIR SINE MIR -18 244 4 1315 253 124 58 chr3 116018574 116019227 -102017931 + L3 LINE CR1 845 1540 -37 227 318 45 81 chr3 116019368 116019566 -102017592 + MIR SINE MIR 26 216 -46 392 270 263 0 chr3 116020604 116020756 -102016402 - MIR SINE MIR -10 252 61 2409 74 0 0 chr3 116020756 116021054 -102016104 + AluSc SINE Alu 1 298 -11 369 184 51 77 chr3 116022023 116022120 -102015038 + Charlie7 DNA MER1_type 2418 2509 -103 698 141 0 107 chr3 116022120 116022269 -102014889 - FLAM_C SINE Alu 0 133 1 369 184 51 77 chr3 116022269 116022367 -102014791 + Charlie7 DNA MER1_type 2509 2608 -4 185 388 26 9 chr3 116022703 116022819 -102014339 + MIR SINE MIR 33 150 -58 2115 113 3 3 chr3 116022908 116023201 -102013957 - AluSx SINE Alu -15 297 5 23 33 0 0 chr3 116023727 116023757 -102013401 + AT_rich Low_complexity Low_complexity 1 30 0 2012 121 3 3 chr3 116025027 116025329 -102011829 + AluSx SINE Alu 2 303 0 287 211 0 18 chr3 116025708 116025765 -102011393 + L2 LINE L2 3254 3309 -4 296 291 27 39 chr3 116025775 116025918 -102011240 - MIR3 SINE MIR -84 124 11 21 0 0 0 chr3 116026067 116026088 -102011070 + AT_rich Low_complexity Low_complexity 1 21 0 279 114 0 0 chr3 116027090 116027134 -102010024 + (CGG)n Simple_repeat Simple_repeat 3 46 0 204 243 9 37 chr3 116027239 116027346 -102009812 + G-rich Low_complexity Low_complexity 4 107 0 384 218 23 15 chr3 116027815 116027948 -102009210 + GA-rich Low_complexity Low_complexity 4 137 0 23 33 0 0 chr3 116028292 116028322 -102008836 + AT_rich Low_complexity Low_complexity 1 30 0 208 238 0 0 chr3 116028492 116028534 -102008624 + GA-rich Low_complexity Low_complexity 3 44 0 211 224 41 0 chr3 116028675 116028724 -102008434 + G-rich Low_complexity Low_complexity 3 53 0 28 61 0 0 chr3 116028932 116028981 -102008177 + GC_rich Low_complexity Low_complexity 1 49 0 22 106 0 0 chr3 116029013 116029079 -102008079 + GC_rich Low_complexity Low_complexity 1 66 0 22 0 0 0 chr3 116029117 116029139 -102008019 + GC_rich Low_complexity Low_complexity 1 22 0 369 145 0 0 chr3 116029201 116029263 -102007895 + (GGA)n Simple_repeat Simple_repeat 1 62 0 1981 131 25 0 chr3 116033995 116034319 -102002839 + AluSx SINE Alu 1 331 0 29 47 0 0 chr3 116034353 116034396 -102002762 + AT_rich Low_complexity Low_complexity 1 43 0 275 220 178 114 chr3 116034591 116034827 -102002331 + MER112 DNA MER1_type 10 260 0 325 280 28 56 chr3 116034840 116034983 -102002175 - MER5A DNA MER1_type -44 145 7 341 332 84 21 chr3 116035198 116035388 -102001770 + MIR SINE MIR 48 249 -13 1717 170 3 7 chr3 116035813 116036101 -102001057 + AluJb SINE Alu 18 304 -8 1029 231 29 48 chr3 116036837 116037148 -102000010 + MER46C DNA MER2_type 33 337 -1 208 271 42 42 chr3 116038307 116038403 -101998755 + CT-rich Low_complexity Low_complexity 1 96 0 * 279 290 0 14 chr3 116038335 116038404 -101998754 + polypyrimidine Low_complexity Low_complexity 1 68 0 405 289 164 7 chr3 116038869 116039021 -101998137 - MIR SINE MIR -54 208 33 22 0 0 0 chr3 116039368 116039390 -101997768 + AT_rich Low_complexity Low_complexity 1 22 0 2130 121 0 20 chr3 116039479 116039784 -101997374 - AluSx SINE Alu -13 299 1 228 320 62 21 chr3 116040603 116040700 -101996458 - L2 LINE L2 -4 3268 3168 1732 168 14 30 chr3 116042678 116042975 -101994183 - AluJo SINE Alu -20 292 1 197 322 83 8 chr3 116043071 116043192 -101993966 - L2 LINE L2 -1 3312 3183 355 222 56 17 chr3 116043467 116043647 -101993511 - Charlie7 DNA MER1_type -8 2604 2418 285 241 19 46 chr3 116043618 116043726 -101993432 - Charlie7 DNA MER1_type -2507 105 1 * 395 211 179 0 chr3 116043758 116043853 -101993305 + L2 LINE L2 3198 3309 -4 325 263 0 0 chr3 116043928 116044004 -101993154 + L2 LINE L2 3229 3304 -9 332 331 41 0 chr3 116045014 116045159 -101991999 - MIR SINE MIR -74 188 38 1014 172 6 12 chr3 116045706 116045875 -101991283 - FRAM SINE Alu -16 160 1 21 36 0 0 chr3 116046000 116046028 -101991130 + AT_rich Low_complexity Low_complexity 1 28 0 511 266 52 12 chr3 116046510 116046683 -101990475 - MIR SINE MIR -70 192 13 215 301 98 46 chr3 116047041 116047194 -101989964 - MIR3 SINE MIR -7 201 41 358 333 0 0 chr3 116048085 116048187 -101988971 - MER91B DNA MER1_type -2 188 87 356 280 64 24 chr3 116048201 116048326 -101988832 - MER91B DNA MER1_type -60 130 1 918 118 7 7 chr3 116048473 116048608 -101988550 + AluSq/x SINE Alu 1 135 -177 2186 79 3 40 chr3 116048611 116048914 -101988244 + AluY SINE Alu 3 294 -17 21 57 0 0 chr3 116051466 116051501 -101985657 + AT_rich Low_complexity Low_complexity 1 35 0 202 311 16 0 chr3 116051618 116051679 -101985479 + C-rich Low_complexity Low_complexity 6 67 0 207 316 62 0 chr3 116051700 116051781 -101985377 - MIR SINE MIR -59 149 63 464 291 55 25 chr3 116051967 116052166 -101984992 + MIR SINE MIR 9 213 -49 3702 139 13 10 chr3 116052430 116053047 -101984111 + L1PA16 LINE L1 5547 6165 -1 582 275 31 59 chr3 116053066 116053288 -101983870 - L2 LINE L2 -4 3309 3094 22 0 0 0 chr3 116053752 116053774 -101983384 + AT_rich Low_complexity Low_complexity 1 22 0 246 324 84 28 chr3 116053927 116054069 -101983089 - L2 LINE L2 0 3313 3164 186 147 59 0 chr3 116054111 116054145 -101983013 + L2 LINE L2 3256 3291 -22 235 394 55 12 chr3 116055509 116055674 -101981484 + MIR3 SINE MIR 33 204 -4 2000 127 3 19 chr3 116055942 116056256 -101980902 + AluJb SINE Alu 1 309 -3 378 327 103 19 chr3 116057084 116057298 -101979860 - MIR SINE MIR 0 262 31 236 309 25 12 chr3 116057890 116057971 -101979187 + MER5A DNA MER1_type 99 180 -9 404 138 0 0 chr3 116058556 116058614 -101978544 + Alu SINE Alu 234 291 -11 2374 67 3 0 chr3 116058669 116058985 -101978173 + AluSp SINE Alu 1 317 0 23 0 0 0 chr3 116059819 116059842 -101977316 + AT_rich Low_complexity Low_complexity 1 23 0 448 180 23 62 chr3 116060900 116061028 -101976130 - L1ME2 LINE L1 0 6164 6042 622 205 115 19 chr3 116061807 116061963 -101975195 + MER5A DNA MER1_type 17 187 -2 620 264 67 76 chr3 116061963 116062089 -101975069 - LTR16A1 LTR ERVL -112 345 219 2096 118 7 3 chr3 116062089 116062385 -101974773 + AluSx SINE Alu 1 297 -15 620 264 67 76 chr3 116062385 116062588 -101974570 - LTR16A1 LTR ERVL -238 219 19 458 229 110 0 chr3 116062592 116062701 -101974457 - MIR SINE MIR -138 124 4 258 341 88 37 chr3 116062728 116062945 -101974213 - L2 LINE L2 -148 3124 2897 189 324 155 29 chr3 116063376 116063583 -101973575 - L2 LINE L2 -905 2409 2177 1707 182 3 7 chr3 116063629 116063926 -101973232 - AluJb SINE Alu -16 296 1 1097 178 42 5 chr3 116064818 116065009 -101972149 - MER20 DNA MER1_type -18 201 4 401 313 79 11 chr3 116065167 116065445 -101971713 + L1MC/D LINE L1 5527 5823 -1985 436 309 25 37 chr3 116067576 116067738 -101969420 + L2 LINE L2 3154 3313 0 330 286 116 10 chr3 116067907 116068113 -101969045 - L1ME2 LINE L1 -707 5467 5294 618 259 103 78 chr3 116068626 116069325 -101967833 - L1ME2 LINE L1 -1384 4762 4082 1854 129 41 0 chr3 116069325 116069638 -101967520 - AluSg1 SINE Alu 0 324 1 618 259 103 78 chr3 116069638 116069773 -101967385 - L1ME2 LINE L1 -2064 4082 3952 2447 87 0 3 chr3 116069773 116070083 -101967075 + AluSq SINE Alu 1 309 -4 618 259 103 78 chr3 116070083 116070260 -101966898 - L1ME2 LINE L1 -2194 3952 3722 983 314 83 44 chr3 116070445 116071562 -101965596 - L1ME2 LINE L1 -2629 3517 2203 262 274 70 82 chr3 116071952 116072146 -101965012 - L1MEd LINE L1 -1027 1463 1268 2381 68 17 0 chr3 116072146 116072439 -101964719 - AluY SINE Alu -13 298 1 262 274 70 82 chr3 116072439 116072725 -101964433 - L1MEd LINE L1 -1222 1268 904 283 248 136 32 chr3 116072826 116072951 -101964207 + MIR SINE MIR 52 189 -73 249 193 0 148 chr3 116072981 116073069 -101964089 - MIR SINE MIR -24 238 164 33 0 0 0 chr3 116073256 116073289 -101963869 + AT_rich Low_complexity Low_complexity 1 33 0 724 109 22 29 chr3 116073289 116073427 -101963731 - LTR7 LTR ERV1 -38 412 276 9816 135 7 31 chr3 116073427 116075085 -101962073 - HERVH LTR ERV1 -5295 2418 800 1933 187 53 31 chr3 116075143 116075592 -101961566 - HERVH LTR ERV1 -7254 459 1 762 75 0 19 chr3 116075592 116075699 -101961459 - LTR7 LTR ERV1 0 450 346 218 274 20 0 chr3 116075742 116075793 -101961365 + (TG)n Simple_repeat Simple_repeat 1 52 0 2069 88 11 18 chr3 116077160 116077468 -101959690 + AluSg SINE Alu 1 306 0 2105 104 14 7 chr3 116077617 116077906 -101959252 - AluSp SINE Alu -21 292 2 450 343 50 14 chr3 116077998 116078217 -101958941 - MIR SINE MIR -2 260 34 24 85 0 0 chr3 116078547 116078606 -101958552 + AT_rich Low_complexity Low_complexity 1 59 0 884 195 0 0 chr3 116079772 116079921 -101957237 + AluJb SINE Alu 137 285 -27 252 197 155 28 chr3 116080025 116080096 -101957062 - MIR SINE MIR -70 192 113 2115 109 0 7 chr3 116080734 116081043 -101956115 - AluSc SINE Alu 0 307 1 515 202 24 107 chr3 116081367 116081535 -101955623 + MIR SINE MIR 82 235 -27 27 29 0 0 chr3 116083837 116083871 -101953287 + AT_rich Low_complexity Low_complexity 1 34 0 23 68 0 0 chr3 116084395 116084439 -101952719 + AT_rich Low_complexity Low_complexity 1 44 0 2207 98 3 10 chr3 116084515 116084812 -101952346 - AluSq SINE Alu -17 296 2 23 33 0 0 chr3 116086082 116086112 -101951046 + AT_rich Low_complexity Low_complexity 1 30 0 216 253 152 0 chr3 116087165 116087244 -101949914 - MIR3 SINE MIR -23 185 95 1149 161 140 0 chr3 116087348 116087591 -101949567 - L1MA4 LINE L1 -5 6295 6019 25 31 0 0 chr3 116087749 116087781 -101949377 + AT_rich Low_complexity Low_complexity 1 32 0 667 0 96 24 chr3 116087794 116087919 -101949239 + (TA)n Simple_repeat Simple_repeat 1 312 0 667 0 96 24 chr3 116087919 116088086 -101949072 + (TA)n Simple_repeat Simple_repeat 2 180 0 210 303 81 49 chr3 116088371 116088556 -101948602 - L2 LINE L2 -112 3201 3011 1347 181 67 17 chr3 116088561 116088859 -101948299 - AluSq SINE Alu 0 313 1 293 323 65 14 chr3 116089036 116089253 -101947905 - L2 LINE L2 -1363 1951 1724 2191 110 0 13 chr3 116090637 116090937 -101946221 - AluSq SINE Alu -17 296 1 987 149 15 65 chr3 116091045 116091246 -101945912 + AluSg/x SINE Alu 111 301 -11 228 200 0 0 chr3 116091710 116091765 -101945393 + (TTCA)n Simple_repeat Simple_repeat 4 58 0 271 333 103 23 chr3 116091885 116092059 -101945099 + L2 LINE L2 3120 3307 -6 427 303 17 8 chr3 116092403 116092522 -101944636 + MIR SINE MIR 15 134 -128 29 0 0 0 chr3 116092753 116092782 -101944376 + AT_rich Low_complexity Low_complexity 1 29 0 1838 153 103 5 chr3 116094138 116094525 -101942633 - L1MA4 LINE L1 -4 6296 5874 1603 163 24 3 chr3 116095377 116095665 -101941493 - AluJo SINE Alu -18 294 1 1001 146 53 18 chr3 116096102 116096273 -101940885 + AluJb SINE Alu 136 312 0 183 339 0 18 chr3 116097041 116097097 -101940061 - L2 LINE L2 -15 3298 3244 215 348 97 58 chr3 116097413 116097620 -101939538 - L2 LINE L2 -16 3256 3042 187 31 62 0 chr3 116097648 116097680 -101939478 + A-rich Low_complexity Low_complexity 2 35 0 674 270 5 42 chr3 116098433 116098622 -101938536 + MIR SINE MIR 22 203 -59 23 0 0 0 chr3 116098645 116098668 -101938490 + AT_rich Low_complexity Low_complexity 1 23 0 416 248 124 22 chr3 116098760 116098897 -101938261 - MIR SINE MIR -102 160 10 315 290 148 22 chr3 116099025 116099208 -101937950 + MIR SINE MIR 32 237 -25 789 192 55 0 chr3 116099674 116099820 -101937338 - Tigger2 DNA MER2_type -11 2707 2554 1296 144 0 5 chr3 116099822 116100030 -101937128 - Tigger2 DNA MER2_type -2511 207 1 216 300 14 41 chr3 116100319 116100462 -101936696 - MIR SINE MIR -67 141 26 1511 219 231 19 chr3 116100857 116101687 -101935471 - Charlie2 DNA MER1_type 0 2862 1857 944 264 50 25 chr3 116101679 116101728 -101935430 - Charlie2 DNA MER1_type -2452 330 284 * 270 0 0 0 chr3 116101728 116101758 -101935400 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 944 264 50 25 chr3 116101758 116102030 -101935128 - Charlie2 DNA MER1_type -2498 284 1 354 344 99 0 chr3 116102461 116102612 -101934546 - MIR3 SINE MIR -11 197 32 10251 122 20 8 chr3 116104750 116106324 -101930834 + Tigger1 DNA MER2_type 1 1592 -826 830 125 31 23 chr3 116106325 116106453 -101930705 + FLAM_C SINE Alu 1 129 -14 4380 152 30 44 chr3 116106454 116106840 -101930318 + Tigger1 DNA MER2_type 1583 1973 -445 2190 92 0 4 chr3 116106840 116107156 -101930002 - AluY SINE Alu 0 315 1 4380 152 30 44 chr3 116107156 116107267 -101929891 + Tigger1 DNA MER2_type 1973 2084 -334 2240 106 0 3 chr3 116107267 116107570 -101929588 - AluSg SINE Alu -8 302 1 4380 152 30 44 chr3 116107570 116107918 -101929240 + Tigger1 DNA MER2_type 2084 2418 0 593 280 6 12 chr3 116107929 116108097 -101929061 - MER5B DNA MER1_type -2 176 10 1295 265 43 40 chr3 116108191 116108614 -101928544 - L3 LINE CR1 -289 1288 865 301 371 16 0 chr3 116108939 116109063 -101928095 - L3 LINE CR1 -1117 460 335 253 189 122 14 chr3 116109589 116109663 -101927495 - MIR3 SINE MIR -31 177 96 15141 138 33 14 chr3 116110546 116110995 -101926163 - L1MA3 LINE L1 0 7724 7285 1917 123 58 0 chr3 116110995 116111272 -101925886 - AluSx SINE Alu -17 295 3 15141 138 33 14 chr3 116111272 116117075 -101920083 - L1MA3 LINE L1 -439 7285 1186 1447 36 6 0 chr3 116117083 116117251 -101919907 - AluY SINE Alu -14 297 129 2363 88 0 0 chr3 116117836 116118143 -101919015 - AluSc SINE Alu -2 307 1 958 178 11 0 chr3 116118431 116118611 -101918547 + MER2 DNA MER2_type 30 211 -134 787 343 123 43 chr3 116118721 116119209 -101917949 - L2 LINE L2 -354 2960 2392 1514 181 86 12 chr3 116119209 116119546 -101917612 - MLT1A1 LTR MaLR -3 362 1 787 343 123 43 chr3 116119546 116119795 -101917363 - L2 LINE L2 -922 2392 2164 324 0 0 0 chr3 116119899 116119935 -101917223 + (T)n Simple_repeat Simple_repeat 1 36 0 572 128 0 29 chr3 116119958 116120021 -101917137 - L1MD2 LINE L1 0 6359 6299 1231 171 25 38 chr3 116120021 116120260 -101916898 + MER46A DNA MER2_type 1 236 0 572 128 0 29 chr3 116120260 116120298 -101916860 - L1MD2 LINE L1 -60 6299 6261 5272 229 202 28 chr3 116120337 116123242 -101913916 - L1MC/D LINE L1 -645 5991 2564 7799 214 89 25 chr3 116123258 116125380 -101911778 - L1MC/D LINE L1 -4282 2258 1 1446 280 62 25 chr3 116125871 116126435 -101910723 - L1ME1 LINE L1 -50 6116 5532 748 275 18 73 chr3 116126439 116126836 -101910322 - L1MDb LINE L1 -5273 1136 762 799 223 17 6 chr3 116127486 116127661 -101909497 - MER69A DNA AcHobo 0 177 1 183 303 64 37 chr3 116127677 116127786 -101909372 - MIR SINE MIR -19 243 132 678 243 122 0 chr3 116127938 116128152 -101909006 + MIR SINE MIR 2 241 -21 29 0 0 0 chr3 116128242 116128271 -101908887 + AT_rich Low_complexity Low_complexity 1 29 0 2327 106 0 0 chr3 116128479 116128781 -101908377 + AluSx SINE Alu 1 302 -10 225 283 47 56 chr3 116129037 116129172 -101907986 - L1MEd LINE L1 -5013 1106 972 1901 136 10 30 chr3 116129172 116129474 -101907684 - AluSx SINE Alu -14 298 3 225 283 47 56 chr3 116129474 116129571 -101907587 - L1MEd LINE L1 -5147 972 876 373 78 0 0 chr3 116129721 116129772 -101907386 - L1PA16 LINE L1 -9 6157 6107 380 141 0 0 chr3 116129780 116129851 -101907307 - L1MA5A LINE L1 -6 6291 6221 251 259 107 71 chr3 116130219 116130255 -101906903 + MIR SINE MIR 128 161 -101 2042 185 92 37 chr3 116130255 116130547 -101906611 - MLT1F LTR MaLR 0 542 209 2090 135 10 0 chr3 116130547 116130843 -101906315 - AluSx SINE Alu -13 299 1 2042 185 92 37 chr3 116130843 116131063 -101906095 - MLT1F LTR MaLR -333 209 2 251 259 107 71 chr3 116131063 116131138 -101906020 + MIR SINE MIR 161 243 -19 465 301 0 33 chr3 116133991 116134174 -101902984 - MER5B DNA MER1_type -1 177 1 2069 123 0 26 chr3 116135964 116136273 -101900885 - AluSx SINE Alu -11 301 1 22 56 0 0 chr3 116137175 116137211 -101899947 + AT_rich Low_complexity Low_complexity 1 36 0 615 286 94 38 chr3 116137538 116137804 -101899354 - L3 LINE CR1 -148 1429 1149 205 325 13 0 chr3 116138703 116138780 -101898378 + L2 LINE L2 2465 2542 -772 2170 99 3 0 chr3 116139605 116139897 -101897261 - AluSg SINE Alu -15 295 3 363 299 15 52 chr3 116140018 116140152 -101897006 - MLT1K LTR MaLR -360 228 100 385 200 47 0 chr3 116140963 116141048 -101896110 - L1MC1 LINE L1 -6 6327 6239 192 350 17 0 chr3 116141464 116141524 -101895634 + MIR3 SINE MIR 147 207 -1 342 273 23 45 chr3 116141598 116141730 -101895428 + MIR3 SINE MIR 43 171 -37 248 200 40 0 chr3 116141743 116141793 -101895365 + CT-rich Low_complexity Low_complexity 1 52 0 1356 240 6 13 chr3 116141793 116142105 -101895053 - AluJo SINE Alu -1 311 2 841 159 0 22 chr3 116142106 116142244 -101894914 - AluJo SINE Alu -177 135 1 1569 174 3 44 chr3 116142529 116142669 -101894489 + AluJb SINE Alu 3 126 -186 372 22 0 0 chr3 116142669 116142714 -101894444 + (CA)n Simple_repeat Simple_repeat 2 46 0 1569 174 3 44 chr3 116142714 116142871 -101894287 + AluJb SINE Alu 126 288 -24 403 272 87 17 chr3 116143886 116144059 -101893099 - MIR SINE MIR -4 258 74 2053 121 4 4 chr3 116144556 116144837 -101892321 - AluSx SINE Alu -29 283 3 1978 167 0 0 chr3 116144951 116145262 -101891896 - AluSx SINE Alu -1 311 1 21 0 0 0 chr3 116149166 116149187 -101887971 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr3 116150421 116150456 -101886702 + AT_rich Low_complexity Low_complexity 1 35 0 841 296 36 17 chr3 116151567 116151868 -101885290 - MLT1I LTR MaLR -2 407 101 288 256 35 12 chr3 116151965 116152051 -101885107 - MER103 DNA DNA -34 132 45 2383 112 25 8 chr3 116152804 116153162 -101883996 - THE1B LTR MaLR 0 364 1 581 281 41 45 chr3 116153189 116153431 -101883727 + MIR SINE MIR 16 256 -6 2034 112 54 36 chr3 116154017 116154348 -101882810 + MER1B DNA MER1_type 1 337 0 1281 183 55 78 chr3 116154644 116155043 -101882115 - MLT1B LTR MaLR 0 390 1 1405 49 16 22 chr3 116155713 116155897 -101881261 - MER107 DNA MER1_type -10 187 5 204 225 0 0 chr3 116156712 116156752 -101880406 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 300 284 25 12 chr3 116156816 116156897 -101880261 + L2 LINE L2 3183 3264 -8 199 71 48 0 chr3 116158551 116158593 -101878565 + T-rich Low_complexity Low_complexity 1 44 0 224 277 241 28 chr3 116158609 116158750 -101878408 + MIR SINE MIR 18 188 -74 1008 171 6 11 chr3 116159391 116159567 -101877591 - FRAM SINE Alu -8 168 1 2479 82 0 0 chr3 116159574 116159879 -101877279 - AluY SINE Alu -6 305 1 27 0 0 0 chr3 116159915 116159942 -101877216 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr3 116160407 116160430 -101876728 + AT_rich Low_complexity Low_complexity 1 23 0 195 234 65 91 chr3 116160610 116160687 -101876471 - L2 LINE L2 -12 3260 3186 419 346 25 12 chr3 116162631 116162793 -101874365 - MIR SINE MIR -79 183 20 212 254 67 60 chr3 116162948 116163082 -101874076 - MIR SINE MIR -6 256 122 23 0 0 0 chr3 116163114 116163137 -101874021 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr3 116163239 116163266 -101873892 + AT_rich Low_complexity Low_complexity 1 27 0 335 252 27 0 chr3 116163294 116163405 -101873753 - L1ME2 LINE L1 -10 6154 6041 799 233 0 6 chr3 116163415 116163578 -101873580 - MIR SINE MIR -99 163 2 180 0 0 0 chr3 116164385 116164405 -101872753 + (A)n Simple_repeat Simple_repeat 1 20 0 380 266 118 24 chr3 116165173 116165342 -101871816 + MIR SINE MIR 1 185 -77 307 304 89 0 chr3 116166628 116166740 -101870418 + MIR SINE MIR 51 172 -90 477 265 57 100 chr3 116167463 116167668 -101869490 - L1ME2 LINE L1 -221 5949 5737 2303 109 0 0 chr3 116167668 116167979 -101869179 - AluY SINE Alu 0 311 1 477 265 57 100 chr3 116167979 116168236 -101868922 - L1ME2 LINE L1 -433 5737 5505 272 329 44 22 chr3 116169163 116169300 -101867858 + MIR3 SINE MIR 64 203 -5 27 0 0 26 chr3 116170438 116170451 -101866707 + AT_rich Low_complexity Low_complexity 1 13 -24 2279 75 0 20 chr3 116170451 116170744 -101866414 - AluSc SINE Alu -22 287 1 27 0 0 26 chr3 116170744 116170768 -101866390 + AT_rich Low_complexity Low_complexity 13 37 0 29 28 0 0 chr3 116171340 116171376 -101865782 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr3 116171401 116171425 -101865733 + AT_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr3 116172976 116172998 -101864160 + (ATG)n Simple_repeat Simple_repeat 1 22 0 1501 127 49 8 chr3 116174176 116174443 -101862715 + L1MA5A LINE L1 6020 6297 0 421 281 82 20 chr3 116176827 116176973 -101860185 + MIR3 SINE MIR 53 207 -1 399 312 83 6 chr3 116179569 116179726 -101857432 + MIR3 SINE MIR 3 171 -37 191 339 0 0 chr3 116180941 116181006 -101856152 - L3 LINE CR1 -41 1536 1472 1393 135 31 4 chr3 116181298 116181527 -101855631 - Tigger5 DNA MER2_type 0 2323 2089 407 221 53 0 chr3 116181529 116181624 -101855534 + Tigger5 DNA MER2_type 2177 2276 -47 269 263 20 46 chr3 116181811 116181963 -101855195 - L1ME4a LINE L1 -48 6073 5926 233 220 100 0 chr3 116182214 116182264 -101854894 + L2 LINE L2 3255 3309 -4 1630 188 0 23 chr3 116182312 116182616 -101854542 + AluJo SINE Alu 1 297 -15 707 228 60 56 chr3 116182681 116182896 -101854262 - MIR SINE MIR 0 262 47 323 301 12 0 chr3 116183346 116183429 -101853729 - L2 LINE L2 -3 3269 3186 24 32 0 0 chr3 116185216 116185247 -101851911 + AT_rich Low_complexity Low_complexity 1 31 0 203 179 0 0 chr3 116190281 116190320 -101846838 + T-rich Low_complexity Low_complexity 1 39 0 26 0 0 0 chr3 116190820 116190846 -101846312 + AT_rich Low_complexity Low_complexity 1 26 0 1739 153 3 28 chr3 116191647 116191965 -101845193 + AluJb SINE Alu 3 313 0 2136 145 0 3 chr3 116192051 116192361 -101844797 - AluSx SINE Alu -3 309 1 283 250 13 0 chr3 116192366 116192442 -101844716 - L1ME4a LINE L1 -205 5916 5840 22 35 0 0 chr3 116192465 116192494 -101844664 + AT_rich Low_complexity Low_complexity 1 29 0 300 161 0 0 chr3 116192631 116192693 -101844465 + L1MB7 LINE L1 6121 6182 -2 21 0 0 0 chr3 116192775 116192796 -101844362 + AT_rich Low_complexity Low_complexity 1 21 0 353 295 57 0 chr3 116193132 116193237 -101843921 - L3 LINE CR1 -678 899 789 * 485 300 59 30 chr3 116193233 116193503 -101843655 + L3 LINE CR1 1240 1517 -60 2333 119 0 0 chr3 116193713 116194023 -101843135 - AluSx SINE Alu -2 310 1 23 33 0 0 chr3 116194023 116194053 -101843105 + AT_rich Low_complexity Low_complexity 1 30 0 407 296 40 45 chr3 116194991 116195064 -101842094 - MER5B DNA MER1_type -1 177 105 813 114 55 129 chr3 116195064 116195266 -101841892 - MER5A DNA MER1_type 0 189 3 407 296 40 45 chr3 116195266 116195368 -101841790 - MER5B DNA MER1_type -73 105 3 2347 71 0 0 chr3 116195707 116196014 -101841144 + AluSc SINE Alu 1 307 0 24 0 0 0 chr3 116197488 116197512 -101839646 + AT_rich Low_complexity Low_complexity 1 24 0 384 248 152 0 chr3 116198563 116198688 -101838470 + MER45A DNA AcHobo 1 144 -34 21 0 0 0 chr3 116198688 116198709 -101838449 + AT_rich Low_complexity Low_complexity 1 21 0 518 253 64 35 chr3 116198833 116199035 -101838123 + L2 LINE L2 3087 3294 -19 1645 100 153 0 chr3 116199875 116200124 -101837034 + AluSc SINE Alu 1 287 -12 2875 150 51 2 chr3 116200394 116200941 -101836217 - L1MA9 LINE L1 0 6312 5739 1660 203 0 25 chr3 116203083 116203398 -101833760 - AluJo SINE Alu -5 307 1 199 267 138 43 chr3 116203878 116203994 -101833164 - L2 LINE L2 0 3313 3187 42451 36 22 2 chr3 116204349 116210412 -101826746 - L1PA3 LINE L1 0 6155 3 30 27 0 0 chr3 116210494 116210531 -101826627 + AT_rich Low_complexity Low_complexity 1 37 0 2176 122 0 3 chr3 116210561 116210857 -101826301 + AluSg SINE Alu 1 295 -15 423 332 107 31 chr3 116211208 116211715 -101825443 - L2 LINE L2 0 3272 2704 381 43 0 0 chr3 116212599 116212646 -101824512 + (TTA)n Simple_repeat Simple_repeat 3 49 0 6579 18 1 4 chr3 116212646 116213410 -101823748 - L1PA4 LINE L1 -18 6137 5376 513 336 68 17 chr3 116213440 116213675 -101823483 + MIR SINE MIR 2 248 -14 340 272 22 43 chr3 116213691 116213783 -101823375 + MIR SINE MIR 2 91 -171 483 188 97 38 chr3 116213968 116214125 -101823033 + MIR SINE MIR 96 262 0 375 293 153 6 chr3 116216231 116216388 -101820770 + MIR SINE MIR 36 215 -47 187 340 109 84 chr3 116216515 116216610 -101820548 - L2 LINE L2 -32 3240 3149 1831 194 88 3 chr3 116216610 116216975 -101820183 - MSTD LTR MaLR 0 396 1 187 340 109 84 chr3 116216975 116217164 -101819994 - L2 LINE L2 -123 3149 2949 259 203 307 37 chr3 116217931 116218094 -101819064 - MIR SINE MIR -36 226 20 2130 110 3 13 chr3 116218213 116218512 -101818646 - AluSc SINE Alu -11 298 3 224 293 0 0 chr3 116219992 116220050 -101817108 + (CATA)n Simple_repeat Simple_repeat 3 60 0 2349 91 0 0 chr3 116220579 116220876 -101816282 + AluSg SINE Alu 1 297 -13 355 311 59 45 chr3 116221159 116221445 -101815713 + L1P LINE L1 4775 5064 -1082 186 43 0 0 chr3 116221785 116221808 -101815350 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 198 171 0 0 chr3 116222585 116222626 -101814532 + CT-rich Low_complexity Low_complexity 2 42 0 180 152 0 0 chr3 116222765 116222798 -101814360 + GA-rich Low_complexity Low_complexity 3 35 0 647 265 30 50 chr3 116223388 116223588 -101813570 + L2 LINE L2 3118 3313 0 181 268 71 0 chr3 116223602 116223658 -101813500 - L3 LINE CR1 -868 709 650 192 315 69 46 chr3 116223658 116223874 -101813284 + L2 LINE L2 1285 1505 -1809 1535 217 0 17 chr3 116224062 116224362 -101812796 - AluJb SINE Alu -17 295 1 1419 285 30 44 chr3 116224362 116224952 -101812206 + L2 LINE L2 2148 2729 -585 387 193 9 101 chr3 116224955 116225064 -101812094 + L2 LINE L2 3204 3302 -11 306 322 186 37 chr3 116225077 116225621 -101811537 + L2 LINE L2 2138 2762 -552 33 25 0 0 chr3 116226109 116226149 -101811009 + AT_rich Low_complexity Low_complexity 1 40 0 2108 120 23 10 chr3 116226149 116226457 -101810701 - AluSx SINE Alu 0 312 1 2296 90 3 0 chr3 116226979 116227268 -101809890 - AluSc SINE Alu -19 290 1 999 187 16 21 chr3 116227380 116227567 -101809591 + MER5A DNA MER1_type 3 188 -1 242 139 0 0 chr3 116227591 116227627 -101809531 + Tigger4(Zombi) DNA MER2_type -2 33 -2698 * 443 83 0 17 chr3 116227610 116227670 -101809488 + Tigger4(Zombi) DNA MER2_type 2673 2731 0 439 318 110 13 chr3 116228402 116228556 -101808602 - L2 LINE L2 0 3272 3104 23 0 0 0 chr3 116228648 116228671 -101808487 + AT_rich Low_complexity Low_complexity 1 23 0 258 289 33 79 chr3 116229505 116229657 -101807501 + MIR3 SINE MIR 62 206 -2 422 218 24 12 chr3 116230341 116230511 -101806647 + (TTA)n Simple_repeat Simple_repeat 1 172 0 244 297 0 14 chr3 116231252 116231326 -101805832 - L2 LINE L2 -5 3267 3195 201 349 24 0 chr3 116232314 116232397 -101804761 - MIR SINE MIR -63 145 61 22 35 0 0 chr3 116233299 116233328 -101803830 + AT_rich Low_complexity Low_complexity 1 29 0 196 0 118 0 chr3 116233535 116233569 -101803589 + T-rich Low_complexity Low_complexity 1 38 0 259 250 109 83 chr3 116233938 116234094 -101803064 + MIR SINE MIR 97 256 -6 21 36 0 0 chr3 116234377 116234405 -101802753 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr3 116234552 116234576 -101802582 + AT_rich Low_complexity Low_complexity 1 24 0 11191 31 3 0 chr3 116235591 116237696 -101799462 - L1PA5 LINE L1 0 6154 4046 183 268 0 36 chr3 116238553 116238609 -101798549 + L2 LINE L2 3186 3239 -74 355 318 9 0 chr3 116238943 116239050 -101798108 + L2 LINE L2 3192 3299 -14 297 273 77 63 chr3 116240308 116240451 -101796707 - MIR SINE MIR -41 221 77 254 252 126 50 chr3 116240484 116240643 -101796515 - MIR SINE MIR -81 181 11 1036 174 0 17 chr3 116242096 116242274 -101794884 + AluJo SINE Alu 115 289 -23 829 181 0 7 chr3 116244431 116244575 -101792583 - FRAM SINE Alu -23 153 11 23 0 0 0 chr3 116244784 116244807 -101792351 + AT_rich Low_complexity Low_complexity 1 23 0 1530 170 97 0 chr3 116245877 116246136 -101791022 - AluJb SINE Alu -28 284 1 23 33 0 0 chr3 116249760 116249790 -101787368 + AT_rich Low_complexity Low_complexity 1 30 0 359 208 32 71 chr3 116249841 116249995 -101787163 + L1ME4a LINE L1 5973 6120 -1 273 237 118 13 chr3 116250138 116250214 -101786944 - L2 LINE L2 0 3313 3230 231 276 11 35 chr3 116250314 116250401 -101786757 + MIR3 SINE MIR 123 207 -1 1610 189 30 3 chr3 116251462 116251759 -101785399 - AluJo SINE Alu -7 305 1 815 115 8 16 chr3 116252626 116252748 -101784410 - FLAM_C SINE Alu -11 132 12 240 59 0 0 chr3 116253228 116253262 -101783896 + (TG)n Simple_repeat Simple_repeat 2 35 0 463 310 91 30 chr3 116253311 116253543 -101783615 - MIR SINE MIR -2 260 15 2466 77 0 0 chr3 116255637 116255935 -101781223 - AluSq SINE Alu -15 298 1 691 200 127 6 chr3 116256905 116257070 -101780088 - MER5A DNA MER1_type -4 185 1 302 289 199 15 chr3 116258985 116259251 -101777907 - L2 LINE L2 -1086 2228 1914 182 307 27 13 chr3 116259588 116259663 -101777495 - L2 LINE L2 -3 3310 3235 337 304 116 17 chr3 116259961 116260142 -101777016 - MIR SINE MIR 0 262 64 254 351 36 30 chr3 116261763 116261928 -101775230 + L3b LINE CR1 1300 1465 -118 844 263 66 0 chr3 116265965 116266208 -101770950 - MIR SINE MIR -1 261 3 202 267 11 56 chr3 116266502 116266592 -101770566 - L2 LINE L2 -96 3217 3132 561 310 62 36 chr3 116266760 116267034 -101770124 + Charlie8 DNA MER1_type 2 282 -2135 1647 184 40 20 chr3 116268831 116269184 -101767974 + MER46B DNA MER2_type 1 235 -1 1050 32 0 0 chr3 116269229 116269352 -101767806 - AluY SINE Alu -14 297 175 2249 91 3 0 chr3 116270007 116270294 -101766864 - AluSx SINE Alu -24 288 1 202 294 69 29 chr3 116270397 116270499 -101766659 - L2 LINE L2 -13 3259 3154 590 256 89 35 chr3 116271225 116271428 -101765730 - MIR SINE MIR -29 233 20 270 95 0 0 chr3 116271443 116271485 -101765673 + (TG)n Simple_repeat Simple_repeat 2 43 0 710 185 0 8 chr3 116271485 116271615 -101765543 - FLAM_C SINE Alu -4 129 1 315 264 47 0 chr3 116271700 116271806 -101765352 + LTR33A LTR ERVL 60 170 -353 4209 72 11 0 chr3 116272651 116273206 -101763952 + L1PA7 LINE L1 5585 6145 -9 432 216 41 0 chr3 116273219 116273316 -101763842 + LTR33A LTR ERVL 66 166 -357 653 273 124 48 chr3 116273757 116274233 -101762925 + LTR33A LTR ERVL 12 523 0 1003 304 187 20 chr3 116274234 116274786 -101762372 + L3 LINE CR1 358 1001 -576 1248 190 41 76 chr3 116274878 116275168 -101761990 + AluJo SINE Alu 1 280 -32 704 51 0 10 chr3 116275172 116275270 -101761888 + (TAGA)n Simple_repeat Simple_repeat 4 100 0 517 296 259 14 chr3 116275534 116275889 -101761269 + L3 LINE CR1 1126 1567 -10 21 57 0 0 chr3 116276474 116276509 -101760649 + AT_rich Low_complexity Low_complexity 1 35 0 665 241 79 94 chr3 116277434 116277762 -101759396 - MER46C DNA MER2_type -14 324 2 1396 154 0 17 chr3 116277925 116278165 -101758993 + MER46A DNA MER2_type 1 236 0 401 361 38 0 chr3 116278187 116278345 -101758813 - MIR SINE MIR -71 191 28 455 188 0 0 chr3 116280084 116280164 -101756994 + AluJ/FLAM SINE Alu 1 80 -232 29 78 0 0 chr3 116281945 116282009 -101755149 + AT_rich Low_complexity Low_complexity 1 64 0 941 227 101 0 chr3 116283078 116283276 -101753882 + Tigger7 DNA MER2_type 1 218 -487 593 181 0 9 chr3 116283277 116283382 -101753776 + Tigger7 DNA MER2_type 2376 2479 -8 279 173 0 0 chr3 116285093 116285145 -101752013 + (CATATA)n Simple_repeat Simple_repeat 6 57 0 202 250 0 0 chr3 116290097 116290149 -101747009 - MIR SINE MIR -13 249 198 * 481 301 30 45 chr3 116290140 116290339 -101746819 - L2 LINE L2 -1 3312 3117 10121 217 33 25 chr3 116290346 116293275 -101743883 + L1MB8 LINE L1 2569 5522 -662 642 149 0 0 chr3 116293301 116293395 -101743763 - AluSc SINE Alu -215 94 1 1364 168 173 11 chr3 116293395 116293759 -101743399 + L1MB8 LINE L1 5750 6172 -6 481 262 90 100 chr3 116293809 116294142 -101743016 - L2 LINE L2 -214 3099 2771 1575 269 125 34 chr3 116294159 116294210 -101742948 - L2 LINE L2 -1052 2262 2217 285 29 0 0 chr3 116294210 116294244 -101742914 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 1575 269 125 34 chr3 116294244 116294601 -101742557 - L2 LINE L2 -1097 2217 1894 1704 128 55 22 chr3 116294601 116294900 -101742258 + AluJb SINE Alu 1 308 0 1575 269 125 34 chr3 116294900 116295288 -101741870 - L2 LINE L2 -1420 1894 1391 27 0 0 0 chr3 116295852 116295879 -101741279 + AT_rich Low_complexity Low_complexity 1 27 0 1979 122 0 0 chr3 116297821 116298084 -101739074 + AluSg SINE Alu 1 263 -47 216 320 0 0 chr3 116298379 116298429 -101738729 - MIR3 SINE MIR -23 185 136 425 269 54 15 chr3 116299026 116299156 -101738002 + MIR3 SINE MIR 4 138 -70 25 0 0 0 chr3 116299411 116299436 -101737722 + AT_rich Low_complexity Low_complexity 1 25 0 225 0 0 0 chr3 116301728 116301753 -101735405 + (T)n Simple_repeat Simple_repeat 1 25 0 229 270 40 14 chr3 116302171 116302245 -101734913 - MIR3 SINE MIR -18 190 115 243 0 0 0 chr3 116303452 116303479 -101733679 + (TA)n Simple_repeat Simple_repeat 1 27 0 1405 101 44 35 chr3 116304857 116304983 -101732175 + MER30 DNA MER1_type 1 131 -99 2438 80 0 10 chr3 116304983 116305297 -101731861 + AluY SINE Alu 1 311 0 1405 101 44 35 chr3 116305297 116305398 -101731760 + MER30 DNA MER1_type 131 230 0 227 407 70 29 chr3 116306185 116306357 -101730801 - MIR3 SINE MIR -14 194 16 372 327 24 42 chr3 116307673 116307838 -101729320 + MIR SINE MIR 26 187 -75 247 291 126 46 chr3 116307950 116308125 -101729033 + MIR SINE MIR 29 217 -45 222 219 0 0 chr3 116309206 116309247 -101727911 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 250 259 17 0 chr3 116309783 116309841 -101727317 - MIR SINE MIR -154 108 50 824 250 102 0 chr3 116310180 116310396 -101726762 + MIR SINE MIR 25 262 0 213 227 30 30 chr3 116311930 116311996 -101725162 + GA-rich Low_complexity Low_complexity 5 70 0 26 0 0 0 chr3 116317073 116317099 -101720059 + AT_rich Low_complexity Low_complexity 1 26 0 29 70 0 0 chr3 116318037 116318094 -101719064 + AT_rich Low_complexity Low_complexity 1 57 0 236 330 55 0 chr3 116318629 116318738 -101718420 + MIR SINE MIR 145 259 -3 255 203 68 68 chr3 116319310 116319428 -101717730 - L1MC5 LINE L1 -36 7925 7808 22 0 0 0 chr3 116319540 116319562 -101717596 + AT_rich Low_complexity Low_complexity 1 22 0 195 262 0 0 chr3 116320933 116320975 -101716183 - L2 LINE L2 -4 3309 3268 21 0 0 0 chr3 116321143 116321164 -101715994 + AT_rich Low_complexity Low_complexity 1 21 0 2389 81 3 7 chr3 116322543 116322853 -101714305 - AluSc SINE Alu 0 309 1 1803 189 0 3 chr3 116323695 116323996 -101713162 + AluJo SINE Alu 1 300 -12 254 211 0 0 chr3 116325264 116325316 -101711842 + LTR30 LTR ERV1 1 52 -670 1042 153 6 11 chr3 116325316 116325499 -101711659 + LTR12 LTR ERV1 53 234 -480 334 121 0 0 chr3 116325553 116325611 -101711547 + LTR12 LTR ERV1 228 285 -429 325 214 11 0 chr3 116325612 116325701 -101711457 + LTR30 LTR ERV1 553 642 -80 536 146 42 0 chr3 116325704 116325800 -101711358 + LTR12 LTR ERV1 615 714 0 4408 179 41 29 chr3 116326303 116327204 -101709954 + L1MC2 LINE L1 5186 6100 -244 1897 144 16 7 chr3 116327204 116327509 -101709649 + AluSx SINE Alu 1 308 -4 4408 179 41 29 chr3 116327509 116327669 -101709489 + L1MC2 LINE L1 6100 6257 -87 1232 147 0 5 chr3 116327784 116327974 -101709184 + AluSg/x SINE Alu 119 307 -5 2619 190 66 226 chr3 116328932 116330333 -101706825 - L2 LINE L2 -4 3309 1685 340 269 15 37 chr3 116330333 116330467 -101706691 - MER94 DNA DNA -3 131 1 2619 190 66 226 chr3 116330467 116330885 -101706273 - L2 LINE L2 -1628 1685 1706 463 179 146 6 chr3 116330885 116331103 -101706055 + ORSL DNA AcHobo 1 274 -1 2619 190 66 226 chr3 116331103 116331871 -101705287 - L2 LINE L2 -1606 1707 818 2323 83 10 7 chr3 116331983 116332283 -101704875 + AluSc SINE Alu 1 301 -8 246 81 0 0 chr3 116332307 116332344 -101704814 + (CA)n Simple_repeat Simple_repeat 2 38 0 231 268 54 18 chr3 116332363 116332475 -101704683 - L1MC/D LINE L1 -1878 5930 5815 753 255 51 5 chr3 116332550 116332766 -101704392 + MER69 DNA AcHobo 6 231 -995 434 181 152 9 chr3 116332839 116332944 -101704214 + MER69 DNA AcHobo 2406 2525 -1 243 352 19 9 chr3 116333304 116333412 -101703746 - MIR3 SINE MIR -1 207 99 624 297 9 23 chr3 116333999 116334218 -101702940 + MARNA DNA Mariner 12 227 -359 310 294 65 53 chr3 116334556 116334726 -101702432 - MIR SINE MIR -42 220 49 2168 134 0 3 chr3 116334765 116335070 -101702088 - AluSx SINE Alu -8 304 1 2090 181 119 51 chr3 116335149 116335678 -101701480 + MLT1F1 LTR MaLR 1 565 -2 483 159 37 19 chr3 116335684 116335791 -101701367 - MER103 DNA DNA -10 156 48 1135 242 42 6 chr3 116335989 116336349 -101700809 + L1MC4 LINE L1 7527 7899 -143 265 370 43 22 chr3 116336802 116336940 -101700218 + L2 LINE L2 3132 3272 0 1757 181 67 34 chr3 116337157 116337604 -101699554 + MLT1C LTR MaLR 6 467 0 607 323 100 15 chr3 116338190 116338531 -101698627 + L2 LINE L2 2019 2388 -926 393 261 153 17 chr3 116338807 116338983 -101698175 + L1ME4a LINE L1 5735 5934 -187 247 259 37 62 chr3 116339000 116339081 -101698077 + HAL1 LINE L1 6 84 -2423 219 346 64 32 chr3 116339116 116339272 -101697886 - L2 LINE L2 -215 3057 2897 460 290 139 16 chr3 116339287 116339532 -101697626 - L2 LINE L2 -562 2752 2478 895 201 87 114 chr3 116341388 116341519 -101695639 + MLT1A1 LTR MaLR 1 134 -231 2153 136 0 0 chr3 116341519 116341827 -101695331 + AluSx SINE Alu 2 309 -3 895 201 87 114 chr3 116341827 116342053 -101695105 + MLT1A1 LTR MaLR 134 348 -17 1882 130 4 7 chr3 116344060 116344336 -101692822 + AluSx SINE Alu 1 275 -37 240 35 0 0 chr3 116344339 116344368 -101692790 + (TC)n Simple_repeat Simple_repeat 2 30 0 222 171 0 0 chr3 116344368 116344409 -101692749 + (TA)n Simple_repeat Simple_repeat 2 42 0 238 292 46 0 chr3 116344909 116344974 -101692184 - MIR SINE MIR -55 153 86 422 122 0 40 chr3 116345292 116345366 -101691792 + MLT1B LTR MaLR 5 75 -315 218 239 164 0 chr3 116345755 116345822 -101691336 + MER5A DNA MER1_type 38 115 -74 776 144 10 153 chr3 116345826 116346028 -101691130 + MER5B DNA MER1_type 6 178 0 208 255 0 21 chr3 116346077 116346124 -101691034 + MER5A DNA MER1_type 116 161 -28 212 300 14 14 chr3 116347329 116347399 -101689759 + L2 LINE L2 2977 3046 -226 718 256 72 88 chr3 116347521 116347966 -101689192 - MLT1H1 LTR MaLR 0 555 118 298 387 32 8 chr3 116348039 116348163 -101688995 + L2 LINE L2 3138 3264 -8 626 312 25 20 chr3 116348897 116349096 -101688062 + MIR3 SINE MIR 3 202 -6 665 297 53 0 chr3 116349255 116349464 -101687694 - MIR SINE MIR -1 261 42 409 272 139 11 chr3 116349946 116350126 -101687032 - MIR SINE MIR -55 207 5 37 39 0 0 chr3 116350269 116350320 -101686838 + AT_rich Low_complexity Low_complexity 1 51 0 2284 100 0 0 chr3 116350391 116350682 -101686476 - AluSx SINE Alu -21 291 1 234 0 0 0 chr3 116350694 116350720 -101686438 + (TTG)n Simple_repeat Simple_repeat 2 27 0 332 324 156 12 chr3 116350956 116351129 -101686029 + MIR SINE MIR 61 258 -4 220 294 0 29 chr3 116351286 116351354 -101685804 + L2 LINE L2 3206 3271 -1 975 242 18 9 chr3 116351540 116351767 -101685391 + L3 LINE CR1 769 997 -580 1162 149 16 11 chr3 116351798 116351986 -101685172 - MER5A DNA MER1_type 0 189 1 221 324 0 14 chr3 116352129 116352200 -101684958 - MIR SINE MIR 0 262 193 624 259 94 25 chr3 116352210 116352411 -101684747 - MIR SINE MIR 0 262 48 520 237 91 52 chr3 116352532 116352931 -101684227 + L1MA10 LINE L1 5761 6322 -5 25 95 0 0 chr3 116353243 116353317 -101683841 + AT_rich Low_complexity Low_complexity 1 74 0 2046 148 0 7 chr3 116354405 116354708 -101682450 - AluJb SINE Alu -11 301 1 467 228 31 109 chr3 116354967 116355160 -101681998 + MER45A DNA AcHobo 1 178 0 26 0 0 49 chr3 116355318 116355334 -101681824 + AT_rich Low_complexity Low_complexity 1 16 -23 2103 132 3 0 chr3 116355334 116355621 -101681537 + AluSx SINE Alu 1 288 -24 26 0 0 49 chr3 116355621 116355645 -101681513 + AT_rich Low_complexity Low_complexity 16 39 0 1665 157 0 27 chr3 116355664 116355957 -101681201 + AluSq SINE Alu 12 296 -17 23 68 0 0 chr3 116356033 116356077 -101681081 + AT_rich Low_complexity Low_complexity 1 44 0 27 29 0 0 chr3 116356601 116356635 -101680523 + AT_rich Low_complexity Low_complexity 1 34 0 507 202 24 107 chr3 116358937 116359105 -101678053 - MIR SINE MIR -27 235 82 234 139 0 0 chr3 116359291 116359327 -101677831 - Alu SINE Alu -266 36 1 180 0 0 0 chr3 116359465 116359485 -101677673 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 325 316 112 33 chr3 116359937 116360152 -101677006 - L3 LINE CR1 -136 1441 1210 5635 174 37 33 chr3 116361118 116362386 -101674772 + L1P LINE L1 39 1311 -4835 800 105 9 0 chr3 116362501 116362615 -101674543 + AluSg/x SINE Alu 177 291 -19 1533 186 69 6 chr3 116362898 116363232 -101673926 - MLT1A1 LTR MaLR 0 365 11 585 110 99 0 chr3 116363734 116363825 -101673333 + AluSc SINE Alu 201 300 -9 22 0 0 0 chr3 116363962 116363984 -101673174 + AT_rich Low_complexity Low_complexity 1 22 0 786 199 128 4 chr3 116364439 116364690 -101672468 - L1MA9 LINE L1 -36 6276 5995 405 303 51 40 chr3 116365112 116365287 -101671871 - MIR SINE MIR -54 208 32 304 261 0 0 chr3 116366227 116366292 -101670866 + L2 LINE L2 3249 3313 0 823 191 25 0 chr3 116367549 116367706 -101669452 - AluJb SINE Alu -7 305 145 1169 146 49 139 chr3 116367706 116367994 -101669164 - AluJo SINE Alu -50 262 1 207 276 145 0 chr3 116368316 116368392 -101668766 + MIR3 SINE MIR 109 195 -13 560 306 39 13 chr3 116368469 116368698 -101668460 + MIR SINE MIR 28 262 0 198 0 0 0 chr3 116368719 116368741 -101668417 + (TG)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr3 116368946 116368967 -101668191 + AT_rich Low_complexity Low_complexity 1 21 0 327 287 125 70 chr3 116369795 116370123 -101667035 + L1M2 LINE L1 780 1125 -5724 285 29 0 0 chr3 116370585 116370619 -101666539 + (CA)n Simple_repeat Simple_repeat 2 35 0 378 278 151 0 chr3 116373116 116373242 -101663916 - MIR SINE MIR -98 164 20 4227 181 123 46 chr3 116374052 116375343 -101661815 - Charlie1a DNA MER1_type -60 1395 5 22 0 0 0 chr3 116376474 116376496 -101660662 + AT_rich Low_complexity Low_complexity 1 22 0 1588 146 47 6 chr3 116376498 116376841 -101660317 + Charlie5 DNA MER1_type 2235 2591 -21 704 169 81 0 chr3 116376845 116377015 -101660143 + AluJb SINE Alu 137 317 0 24 0 0 0 chr3 116377097 116377121 -101660037 + AT_rich Low_complexity Low_complexity 1 24 0 1289 133 58 4 chr3 116377316 116377541 -101659617 - L1MC1 LINE L1 -11 6322 6086 519 239 194 45 chr3 116377670 116377984 -101659174 - L1ME4a LINE L1 -3 6118 5758 21 0 0 0 chr3 116378171 116378192 -101658966 + AT_rich Low_complexity Low_complexity 1 21 0 375 273 97 25 chr3 116378218 116378517 -101658641 - L1ME4a LINE L1 -802 5344 5107 181 231 128 26 chr3 116379873 116379951 -101657207 + L3 LINE CR1 1203 1288 -289 21 36 0 0 chr3 116380281 116380309 -101656849 + AT_rich Low_complexity Low_complexity 1 28 0 4888 144 38 14 chr3 116381372 116382274 -101654884 - L1MC1 LINE L1 -11 6322 5400 1477 218 58 7 chr3 116382319 116382751 -101654407 - L1ME2 LINE L1 -278 5886 5433 36 23 0 0 chr3 116382757 116382800 -101654358 + AT_rich Low_complexity Low_complexity 1 43 0 2448 76 3 10 chr3 116382800 116383114 -101654044 - AluSp SINE Alu -1 312 1 596 119 13 0 chr3 116383115 116383274 -101653884 - L1MC1 LINE L1 -11 6322 6078 * 7009 161 80 31 chr3 116383269 116385199 -101651959 - L1MCa LINE L1 -4307 2119 2 22 35 0 0 chr3 116385289 116385318 -101651840 + AT_rich Low_complexity Low_complexity 1 29 0 625 190 8 0 chr3 116386480 116386601 -101650557 + Tigger6 DNA MER2_type 35 156 -927 494 273 30 67 chr3 116386597 116386708 -101650450 - Charlie7 DNA MER1_type -2284 328 214 * 1222 201 25 7 chr3 116386708 116386986 -101650172 - L1MB2 LINE L1 0 6171 5889 494 273 30 67 chr3 116386986 116387174 -101649984 - Charlie7 DNA MER1_type -2398 214 40 2011 254 47 22 chr3 116387182 116387442 -101649716 - MER90 LTR ERV1 0 614 362 2297 134 52 45 chr3 116387442 116387484 -101649674 - MSTA LTR MaLR 0 428 388 2192 108 0 10 chr3 116387484 116387781 -101649377 + AluSx SINE Alu 1 294 -18 2297 134 52 45 chr3 116387781 116388162 -101648996 - MSTA LTR MaLR -40 388 2 2011 254 47 22 chr3 116388162 116388500 -101648658 - MER90 LTR ERV1 -252 362 1 359 316 143 8 chr3 116388524 116388709 -101648449 + MIR SINE MIR 36 243 -19 454 390 99 34 chr3 116388764 116389118 -101648040 - L2 LINE L2 -5 3267 2891 184 164 91 18 chr3 116389477 116389532 -101647626 - L2 LINE L2 -828 2486 2428 317 120 0 0 chr3 116390274 116390324 -101646834 - MADE1 DNA Mariner 0 80 31 3062 238 104 22 chr3 116390676 116392223 -101644935 - L1M4c LINE L1 -3993 2391 911 577 274 67 62 chr3 116392963 116393335 -101643823 - L1M4c LINE L1 -5766 547 174 314 200 95 48 chr3 116393386 116393430 -101643728 - MER94 DNA DNA -14 120 80 2191 183 72 33 chr3 116393430 116393916 -101643242 + MLT1D LTR MaLR 1 505 0 314 200 95 48 chr3 116393916 116393976 -101643182 - MER94 DNA DNA -54 80 11 2447 84 3 0 chr3 116394558 116394869 -101642289 + AluSp SINE Alu 1 312 -1 21 0 0 0 chr3 116394937 116394958 -101642200 + AT_rich Low_complexity Low_complexity 1 21 0 561 99 0 0 chr3 116395037 116395118 -101642040 + (TA)n Simple_repeat Simple_repeat 2 82 0 210 171 0 0 chr3 116397079 116397120 -101640038 + (CA)n Simple_repeat Simple_repeat 2 42 0 192 302 126 11 chr3 116397452 116397569 -101639589 + MIR SINE MIR 33 161 -64 1638 166 100 6 chr3 116397970 116398301 -101638857 - MLT1A1 LTR MaLR -2 363 2 590 301 25 14 chr3 116399431 116399830 -101637328 - LTR16A LTR ERVL 0 491 16 307 163 54 27 chr3 116399848 116399995 -101637163 + (CATA)n Simple_repeat Simple_repeat 1 151 0 567 252 210 9 chr3 116401110 116401324 -101635834 - MIR SINE MIR -3 259 3 36 40 0 0 chr3 116402893 116402943 -101634215 + AT_rich Low_complexity Low_complexity 1 50 0 683 311 42 50 chr3 116402963 116403346 -101633812 + L2 LINE L2 2019 2398 -916 279 193 35 162 chr3 116404565 116404762 -101632396 + HsTC2 DNA Tc2 110 281 -1617 614 284 36 75 chr3 116404784 116404961 -101632197 + HsTC2 DNA Tc2 490 672 -1226 2034 112 14 0 chr3 116404961 116405266 -101631892 - AluSx SINE Alu 0 309 1 614 284 36 75 chr3 116405266 116405471 -101631687 + HsTC2 DNA Tc2 672 858 -1040 229 250 0 18 chr3 116405660 116405716 -101631442 + HsTC2 DNA Tc2 1844 1898 0 306 295 70 88 chr3 116405744 116405971 -101631187 + L2 LINE L2 2833 3055 -217 221 240 0 0 chr3 116406991 116407041 -101630117 + (TGAA)n Simple_repeat Simple_repeat 3 52 0 883 189 0 111 chr3 116407096 116407339 -101629819 + MER20 DNA MER1_type 1 216 -3 23 54 0 0 chr3 116407752 116407789 -101629369 + AT_rich Low_complexity Low_complexity 1 37 0 533 333 90 35 chr3 116408048 116408450 -101628708 - L2 LINE L2 -1 3312 2889 * 1832 320 76 44 chr3 116408445 116409706 -101627452 - L2 LINE L2 -528 2786 1486 2042 120 14 0 chr3 116409744 116410020 -101627138 + AluSx SINE Alu 9 288 -24 474 150 46 6 chr3 116410020 116410193 -101626965 + (TA)n Simple_repeat Simple_repeat 1 180 0 363 171 79 107 chr3 116410751 116410891 -101626267 - MLT1L LTR MaLR -14 601 466 265 337 0 11 chr3 116411459 116411551 -101625607 + L2 LINE L2 3182 3272 0 1752 147 45 32 chr3 116411581 116412008 -101625150 + L1MA7 LINE L1 5178 5617 -674 599 139 37 0 chr3 116412020 116412128 -101625030 + L1MA7 LINE L1 6113 6224 -67 1868 230 42 51 chr3 116412128 116412680 -101624478 + MLT2B3 LTR ERVL 1 547 -7 349 113 32 0 chr3 116412685 116412747 -101624411 + L1MA7 LINE L1 6222 6285 -6 2070 123 0 3 chr3 116412751 116413086 -101624072 - AluSx SINE Alu 0 334 1 227 270 16 0 chr3 116414611 116414674 -101622484 + GA-rich Low_complexity Low_complexity 1 64 0 222 292 21 10 chr3 116415124 116415220 -101621938 + (CATATA)n Simple_repeat Simple_repeat 4 100 0 290 264 129 29 chr3 116415552 116415692 -101621466 + MIR3 SINE MIR 40 193 -15 246 62 0 0 chr3 116415716 116415748 -101621410 + (TAG)n Simple_repeat Simple_repeat 2 33 0 452 280 123 59 chr3 116415758 116415994 -101621164 - MIR SINE MIR -10 252 2 220 222 127 0 chr3 116417450 116417513 -101619645 - MIR SINE MIR -1 261 191 214 261 78 52 chr3 116418273 116418388 -101618770 + L2 LINE L2 3147 3264 -8 353 350 112 5 chr3 116418818 116419024 -101618134 - MIR SINE MIR -3 259 32 222 303 45 30 chr3 116418990 116419056 -101618102 + L2 LINE L2 3194 3260 -12 * 234 301 0 24 chr3 116419375 116419458 -101617700 - L2 LINE L2 -1219 2095 2015 2294 132 71 7 chr3 116420968 116421377 -101615781 - L1PA14 LINE L1 -3 6158 5724 2121 133 3 0 chr3 116422148 116422448 -101614710 + AluSx SINE Alu 3 303 -9 1147 192 0 9 chr3 116424186 116424431 -101612727 + AluJb SINE Alu 83 312 0 5368 209 65 11 chr3 116424431 116425764 -101611394 - Charlie1a DNA MER1_type -50 1405 1 306 300 110 0 chr3 116426332 116426432 -101610726 - ORSL DNA AcHobo -1 274 164 444 253 106 15 chr3 116426650 116426827 -101610331 - MIR SINE MIR 0 262 9 313 246 200 0 chr3 116427507 116427637 -101609521 + MIR SINE MIR 32 187 -75 2377 70 0 0 chr3 116428097 116428396 -101608762 + AluY SINE Alu 1 299 -12 201 361 57 65 chr3 116429187 116429417 -101607741 + L2 LINE L2 2953 3180 -92 762 136 8 0 chr3 116429421 116429546 -101607612 - FLAM_A SINE Alu -7 135 10 275 253 126 0 chr3 116429546 116429633 -101607525 + L2 LINE L2 3215 3312 -1 27 29 0 0 chr3 116431249 116431283 -101605875 + AT_rich Low_complexity Low_complexity 1 34 0 25 31 0 0 chr3 116431581 116431613 -101605545 + AT_rich Low_complexity Low_complexity 1 32 0 1256 161 134 9 chr3 116431828 116432051 -101605107 + AluSg SINE Alu 39 289 -21 1966 134 134 31 chr3 116432514 116432902 -101604256 + MSTA LTR MaLR 1 428 0 303 242 83 42 chr3 116435120 116435240 -101601918 + MIR SINE MIR 128 252 -10 200 327 0 0 chr3 116435224 116435276 -101601882 - L2 LINE L2 -6 3307 3256 * 2506 121 78 10 chr3 116435723 116436135 -101601023 - L1PB4 LINE L1 -8 6148 5709 471 99 0 0 chr3 116436139 116436210 -101600948 + MADE1 DNA Mariner 3 73 -7 2452 133 18 43 chr3 116436215 116436842 -101600316 - L1PB4 LINE L1 -444 5712 5100 2165 129 0 19 chr3 116436910 116437228 -101599930 - AluSx SINE Alu 0 312 1 471 73 0 0 chr3 116437545 116437613 -101599545 + (TC)n Simple_repeat Simple_repeat 1 68 0 341 307 91 11 chr3 116437756 116437932 -101599226 + MIR3 SINE MIR 2 191 -17 40 31 0 15 chr3 116437963 116437994 -101599164 + AT_rich Low_complexity Low_complexity 1 31 -33 1426 189 14 30 chr3 116437994 116438290 -101598868 - AluJo SINE Alu -21 291 1 40 31 0 15 chr3 116438290 116438323 -101598835 + AT_rich Low_complexity Low_complexity 31 64 0 29 28 0 0 chr3 116438444 116438480 -101598678 + AT_rich Low_complexity Low_complexity 1 36 0 471 203 71 82 chr3 116438602 116438784 -101598374 + MER104 DNA MER2_type 1 180 0 436 308 118 23 chr3 116439150 116439413 -101597745 - LTR16A LTR ERVL -8 442 155 841 211 76 0 chr3 116439507 116439678 -101597480 - LTR40a LTR ERVL -44 475 292 * 864 203 25 0 chr3 116439676 116439834 -101597324 - LTR40a LTR ERVL -357 162 1 1870 163 3 13 chr3 116439919 116440220 -101596938 - AluJo SINE Alu -14 298 1 2567 102 8 0 chr3 116440247 116440608 -101596550 - THE1B LTR MaLR 0 364 1 1031 149 48 14 chr3 116441296 116441504 -101595654 - MLT1A1 LTR MaLR -150 215 1 327 245 50 29 chr3 116441511 116441650 -101595508 - MER103 DNA DNA -12 154 13 249 305 39 52 chr3 116441760 116441914 -101595244 + L2 LINE L2 3155 3306 -7 531 305 117 25 chr3 116442298 116442537 -101594621 + MIR SINE MIR 2 262 0 33 25 0 0 chr3 116442844 116442884 -101594274 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr3 116443139 116443162 -101593996 + AT_rich Low_complexity Low_complexity 1 23 0 1892 118 0 25 chr3 116443220 116443524 -101593634 - AluSx SINE Alu 0 310 14 276 329 110 20 chr3 116443851 116443997 -101593161 - MIR SINE MIR -90 172 14 769 136 0 79 chr3 116444144 116444284 -101592874 - FRAM SINE Alu -12 164 36 22 0 0 0 chr3 116445165 116445187 -101591971 + AT_rich Low_complexity Low_complexity 1 22 0 2761 62 0 14 chr3 116445379 116445732 -101591426 - LTR46 LTR ERV1 -112 348 1 328 279 28 49 chr3 116445814 116445927 -101591231 + L1MEc LINE L1 1232 1346 -5050 1405 111 60 0 chr3 116445927 116446143 -101591015 + MER30 DNA MER1_type 2 230 0 328 279 28 49 chr3 116446143 116446276 -101590882 + L1MEc LINE L1 1346 1473 -4923 419 265 0 20 chr3 116446513 116446660 -101590498 + L1MEc LINE L1 1558 1701 -4514 415 316 40 32 chr3 116446745 116446995 -101590163 + L1MEc LINE L1 1858 2109 -4287 2632 144 62 21 chr3 116447158 116447510 -101589648 + MER75 DNA T2_type 15 394 -120 2135 123 3 7 chr3 116447510 116447820 -101589338 - AluSx SINE Alu -3 309 1 2632 144 62 21 chr3 116447820 116447947 -101589211 + MER75 DNA T2_type 394 514 0 3040 275 110 40 chr3 116447970 116450320 -101586838 + L1M4 LINE L1 2782 5294 -852 1343 267 83 32 chr3 116450393 116450534 -101586624 + L1MEc LINE L1 3194 3326 -2889 1711 172 3 27 chr3 116450534 116450831 -101586327 + AluJo SINE Alu 1 290 -22 1343 267 83 32 chr3 116450831 116451185 -101585973 + L1MEc LINE L1 3326 3660 -2555 1366 271 70 46 chr3 116451185 116451727 -101585431 + MLT1H1 LTR MaLR 1 555 0 1343 267 83 32 chr3 116451727 116452654 -101584504 + L1MEc LINE L1 3660 4899 -1316 528 340 37 5 chr3 116453338 116453529 -101583629 - MIR3 SINE MIR -8 200 4 493 83 0 0 chr3 116453896 116453980 -101583178 - L1PB1 LINE L1 -3 6148 6065 1672 226 52 30 chr3 116455541 116456084 -101581074 - L1M4 LINE L1 -3049 3097 2543 2459 71 3 0 chr3 116457644 116457941 -101579217 - AluSp SINE Alu -15 298 1 541 212 127 42 chr3 116458031 116458196 -101578962 + MER5A DNA MER1_type 11 189 0 293 345 26 0 chr3 116458229 116458345 -101578813 - MERVL LTR ERVL -3507 1978 1860 1842 231 15 17 chr3 116458483 116458946 -101578212 - L1ME1 LINE L1 -92 6074 5613 2296 135 25 41 chr3 116458946 116459389 -101577769 - MER51B LTR ERV1 0 377 1 25 0 0 0 chr3 116460150 116460175 -101576983 + AT_rich Low_complexity Low_complexity 1 25 0 5200 105 18 14 chr3 116460182 116460913 -101576245 + L1PA13 LINE L1 5426 6159 -4 433 95 162 0 chr3 116461195 116461269 -101575889 - L1P4 LINE L1 -657 5511 5426 973 136 93 6 chr3 116461297 116461459 -101575699 - AluSx SINE Alu -16 294 119 238 113 38 19 chr3 116461463 116461516 -101575642 + T-rich Low_complexity Low_complexity 5 58 0 45213 39 1 1 chr3 116461516 116467675 -101569483 - L1PA3 LINE L1 0 6155 1 870 131 0 0 chr3 116467680 116467802 -101569356 - AluSx SINE Alu -179 133 12 1786 172 0 30 chr3 116467978 116468280 -101568878 + AluJb SINE Alu 1 293 -19 2357 87 3 0 chr3 116468487 116468786 -101568372 + AluSg SINE Alu 1 300 -10 1914 156 30 0 chr3 116468799 116469094 -101568064 + AluJb SINE Alu 1 304 -8 2309 87 0 3 chr3 116469381 116469692 -101567466 - AluY SINE Alu -1 310 1 187 286 48 0 chr3 116469719 116469761 -101567397 + L2 LINE L2 3254 3297 -16 1619 153 0 61 chr3 116469769 116470064 -101567094 - AluJo SINE Alu -14 298 22 2149 108 0 14 chr3 116470583 116470900 -101566258 - AluSx SINE Alu 0 313 1 257 364 77 15 chr3 116474999 116475194 -101561964 - L2 LINE L2 -109 3163 2957 475 257 110 48 chr3 116475524 116475796 -101561362 - LTR16A1 LTR ERVL -161 296 8 219 103 0 0 chr3 116476325 116476364 -101560794 + (CAGT)n Simple_repeat Simple_repeat 4 42 0 2895 284 111 63 chr3 116476369 116476563 -101560595 - L2 LINE L2 -33 3280 3097 1742 154 11 0 chr3 116476563 116476829 -101560329 + AluJo SINE Alu 12 280 -32 225 0 0 0 chr3 116476829 116476854 -101560304 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 2895 284 111 63 chr3 116476854 116477266 -101559892 - L2 LINE L2 -216 3097 2706 1027 210 11 0 chr3 116477266 116477442 -101559716 - MER45A DNA AcHobo 0 178 1 2895 284 111 63 chr3 116477442 116478702 -101558456 - L2 LINE L2 -607 2706 1345 415 284 52 0 chr3 116478783 116478917 -101558241 - L2 LINE L2 -1965 1349 1209 876 257 87 39 chr3 116479061 116479396 -101557762 - LTR16C LTR ERVL -51 440 90 262 250 43 69 chr3 116479403 116479519 -101557639 + L2 LINE L2 2349 2461 -853 211 303 0 30 chr3 116479515 116479581 -101557577 - L2 LINE L2 -2 3311 3248 * 491 271 87 24 chr3 116479768 116479975 -101557183 - HERV16 LTR ERVL -1781 3983 3764 1786 218 52 14 chr3 116479978 116480424 -101556734 + MLT1C LTR MaLR 4 466 -1 1111 343 28 46 chr3 116480442 116481273 -101555885 - HERV16 LTR ERVL -2014 3750 2935 2331 316 25 22 chr3 116481368 116482392 -101554766 - HERV16 LTR ERVL -3177 1819 732 863 336 45 24 chr3 116482756 116483175 -101553983 - LTR16A LTR ERVL -6 444 17 369 287 91 14 chr3 116483195 116483338 -101553820 + L2 LINE L2 3158 3311 -2 19969 194 19 21 chr3 116483505 116487625 -101549533 + L1PA14 LINE L1 608 4560 -3039 2118 104 0 0 chr3 116487625 116487905 -101549253 + AluSc SINE Alu 30 309 0 19969 194 19 21 chr3 116487905 116490940 -101546218 + L1PA14 LINE L1 4560 7599 0 6510 187 75 37 chr3 116491503 116492896 -101544262 + L1M4b LINE L1 14 1458 -5401 386 293 45 76 chr3 116493117 116493402 -101543756 + L1M4b LINE L1 2475 2748 -4390 2084 121 7 13 chr3 116493402 116493739 -101543419 + AluSx SINE Alu 1 312 0 386 293 45 76 chr3 116493739 116493808 -101543350 + L1M4b LINE L1 2748 2818 -4320 309 210 0 0 chr3 116493843 116493905 -101543253 + MLT1C LTR MaLR 216 277 -190 3860 114 101 0 chr3 116493908 116494493 -101542665 + MER39B LTR ERV1 1 644 -9 2353 67 7 13 chr3 116494512 116494810 -101542348 + AluSc SINE Alu 1 296 -13 664 200 13 45 chr3 116494817 116494905 -101542253 + MLT1C LTR MaLR 316 399 -68 1627 193 7 0 chr3 116494905 116495259 -101541899 - AluJb SINE Alu 0 356 1 664 200 13 45 chr3 116495259 116495324 -101541834 + MLT1C LTR MaLR 399 465 -2 1773 179 119 27 chr3 116495432 116495845 -101541313 + MLT1C LTR MaLR 11 461 -6 2253 100 0 3 chr3 116496012 116496311 -101540847 + AluSx SINE Alu 1 298 -14 1069 204 82 122 chr3 116496312 116496787 -101540371 + LTR37B LTR ERV1 13 468 0 26 0 0 0 chr3 116496829 116496855 -101540303 + AT_rich Low_complexity Low_complexity 1 26 0 225 239 0 91 chr3 116497243 116497331 -101539827 - L2 LINE L2 -84 3229 3150 1872 215 22 55 chr3 116498562 116499054 -101538104 - MER110 LTR ERV1 -15 476 1 1259 262 55 66 chr3 116499137 116499329 -101537829 - MER110-int LTR ERV1 -3 4644 4451 2333 104 0 3 chr3 116499329 116499636 -101537522 - AluSg SINE Alu -4 306 1 1259 262 55 66 chr3 116499636 116499897 -101537261 - MER110-int LTR ERV1 -196 4451 4196 580 290 65 43 chr3 116499988 116500264 -101536894 - MER110-int LTR ERV1 -591 4056 3775 509 271 0 9 chr3 116500486 116500593 -101536565 + MER110-int LTR ERV1 3716 3821 -826 1790 282 46 60 chr3 116500609 116501502 -101535656 - MER110-int LTR ERV1 -1041 3606 2727 1319 246 60 20 chr3 116502264 116502468 -101534690 + L1MDa LINE L1 1550 1744 -4796 1379 174 96 34 chr3 116502468 116502761 -101534397 + AluJo SINE Alu 1 311 -1 1319 246 60 20 chr3 116502761 116503056 -101534102 + L1MDa LINE L1 1744 2069 -4471 1159 250 93 34 chr3 116503070 116503510 -101533648 - MLT1C LTR MaLR 0 467 2 1726 175 60 6 chr3 116503550 116503865 -101533293 - MLT1A1 LTR MaLR -2 363 32 3574 240 63 36 chr3 116503959 116504180 -101532978 + L1MDa LINE L1 2154 2368 -4172 294 29 0 0 chr3 116504180 116504215 -101532943 + (TG)n Simple_repeat Simple_repeat 1 35 0 3574 240 63 36 chr3 116504215 116505457 -101531701 + L1MDa LINE L1 2368 3697 -2843 2456 88 0 0 chr3 116505457 116505753 -101531405 + AluSx SINE Alu 14 309 -3 3574 240 63 36 chr3 116505753 116506214 -101530944 + L1MDa LINE L1 3697 4144 -2396 810 251 50 6 chr3 116506236 116506555 -101530603 + L1ME1 LINE L1 3252 3584 -2956 4686 226 82 17 chr3 116506588 116508794 -101528364 + L1ME1 LINE L1 4178 6534 -26 273 182 0 0 chr3 116509343 116509398 -101527760 + (TA)n Simple_repeat Simple_repeat 1 55 0 302 157 0 0 chr3 116509656 116509707 -101527451 + L1M4 LINE L1 4842 4892 -1254 202 239 0 0 chr3 116509979 116510025 -101527133 + A-rich Low_complexity Low_complexity 1 46 0 2253 144 47 28 chr3 116510094 116510518 -101526640 + MSTB1 LTR MaLR 1 432 0 2031 192 5 24 chr3 116510521 116510653 -101526505 - MLT1A1 LTR MaLR 0 365 232 2316 161 95 2 chr3 116510653 116511074 -101526084 + LTR46 LTR ERV1 1 460 0 2031 192 5 24 chr3 116511074 116511310 -101525848 - MLT1A1 LTR MaLR -133 232 4 455 275 142 28 chr3 116512523 116512876 -101524282 - L1M4 LINE L1 -2039 4107 3715 231 280 21 0 chr3 116513184 116513277 -101523881 - L1M4 LINE L1 -2688 3458 3364 198 232 89 0 chr3 116513442 116513498 -101523660 - MIR SINE MIR -43 219 159 322 310 86 43 chr3 116513891 116514078 -101523080 + L3 LINE CR1 1247 1441 -136 180 0 0 0 chr3 116514531 116514551 -101522607 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2194 109 0 3 chr3 116514690 116514984 -101522174 + AluSx SINE Alu 1 293 -19 1725 180 67 6 chr3 116515267 116515611 -101521547 - MLT1A1 LTR MaLR 0 365 1 663 289 21 16 chr3 116516153 116516343 -101520815 + MIR SINE MIR 19 209 -53 577 242 210 5 chr3 116517960 116518146 -101519012 + MER58A DNA MER1_type 1 224 0 644 278 73 29 chr3 116519451 116519656 -101517502 + MIR SINE MIR 15 228 -34 2572 58 0 0 chr3 116519657 116519968 -101517190 + AluY SINE Alu 1 311 0 35 41 0 0 chr3 116520029 116520078 -101517080 + AT_rich Low_complexity Low_complexity 1 49 0 2790 213 81 49 chr3 116520078 116521017 -101516141 - L1ME1 LINE L1 -5 6421 5465 1962 155 0 13 chr3 116521080 116521383 -101515775 - AluJb SINE Alu -12 300 2 2124 237 134 84 chr3 116521408 116523258 -101513900 - L1ME1 LINE L1 -978 5428 3467 2198 114 0 7 chr3 116523286 116523585 -101513573 - AluSx SINE Alu -15 297 1 1553 241 70 32 chr3 116523594 116525209 -101511949 - L1ME1 LINE L1 -3218 3188 1379 256 169 136 0 chr3 116525217 116525276 -101511882 - L1ME1 LINE L1 -5124 1285 1219 491 284 46 65 chr3 116525384 116525423 -101511735 + MLT1G3 LTR MaLR 1 39 -491 2000 144 0 16 chr3 116525423 116525729 -101511429 - AluJb SINE Alu -11 301 1 491 284 46 65 chr3 116525729 116525990 -101511168 + MLT1G3 LTR MaLR 39 257 -273 486 229 18 0 chr3 116526013 116526122 -101511036 + MLT1G1 LTR MaLR 482 592 -3 231 61 0 0 chr3 116526399 116526432 -101510726 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 864 368 37 18 chr3 116526491 116527038 -101510120 - HERV16 LTR ERVL -3437 1559 1003 843 357 40 8 chr3 116527696 116528074 -101509084 - LTR16C LTR ERVL -3 488 99 417 216 138 9 chr3 116528210 116528326 -101508832 - Charlie4 DNA MER1_type -1827 134 4 1703 161 3 31 chr3 116528342 116528634 -101508524 + AluJb SINE Alu 9 292 -20 355 233 77 21 chr3 116528685 116528816 -101508342 + MLT1J2 LTR MaLR 41 191 -255 483 302 67 17 chr3 116528845 116528965 -101508193 + MLT1J2 LTR MaLR 263 396 -54 269 51 26 0 chr3 116528965 116529004 -101508154 + (TG)n Simple_repeat Simple_repeat 1 40 0 483 302 67 17 chr3 116529004 116529062 -101508096 + MLT1J2 LTR MaLR 396 450 0 467 0 35 0 chr3 116530362 116530420 -101506738 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 28 29 0 0 chr3 116530613 116530648 -101506510 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr3 116530765 116530791 -101506367 + AT_rich Low_complexity Low_complexity 1 26 0 1052 213 101 95 chr3 116530792 116531313 -101505845 + MLT1E LTR MaLR 10 593 0 1854 123 0 31 chr3 116531517 116531836 -101505322 + AluJo SINE Alu 1 310 0 28 29 0 0 chr3 116531890 116531925 -101505233 + AT_rich Low_complexity Low_complexity 1 35 0 666 320 65 42 chr3 116532005 116532439 -101504719 - LTR16B LTR ERVL -20 444 1 555 251 125 48 chr3 116532793 116533144 -101504014 - MLT1J2 LTR MaLR -28 422 45 288 0 0 0 chr3 116533144 116533176 -101503982 + (CAA)n Simple_repeat Simple_repeat 2 33 0 603 256 56 26 chr3 116534570 116534769 -101502389 - MLT1J2 LTR MaLR -9 441 239 411 280 60 0 chr3 116534794 116534944 -101502214 - MLT1J1 LTR MaLR -287 159 1 303 344 8 16 chr3 116535026 116535154 -101502004 - MIR SINE MIR -124 138 12 2005 199 103 43 chr3 116536969 116537570 -101499588 + MLT1E2 LTR MaLR 3 626 0 210 71 0 0 chr3 116537949 116537977 -101499181 + (T)n Simple_repeat Simple_repeat 1 28 0 1268 254 20 17 chr3 116538373 116538668 -101498490 + LTR40a LTR ERVL 1 296 -223 390 330 9 0 chr3 116538668 116538780 -101498378 - MER81 DNA DNA -1 113 1 976 237 27 18 chr3 116538780 116539004 -101498154 + LTR40b LTR ERVL 233 458 -4 1471 223 134 52 chr3 116539175 116539659 -101497499 - L1ME LINE L1 -3221 2994 2442 2288 121 38 11 chr3 116539659 116540024 -101497134 + THE1C LTR MaLR 1 375 0 1471 223 134 52 chr3 116540024 116540190 -101496968 - L1ME LINE L1 -3773 2442 2291 1368 151 0 14 chr3 116540198 116540410 -101496748 - AluJb SINE Alu -20 292 84 789 273 44 31 chr3 116540428 116540812 -101496346 - L1ME LINE L1 -4079 2317 1929 400 319 52 46 chr3 116540898 116541208 -101495950 - L1ME LINE L1 -5855 350 55 752 198 95 121 chr3 116541211 116541413 -101495745 - L1MC5 LINE L1 -829 7132 6943 1898 184 0 0 chr3 116541413 116541717 -101495441 - AluJb SINE Alu -8 304 1 752 198 95 121 chr3 116541717 116541903 -101495255 - L1MC5 LINE L1 -1018 6943 6754 442 366 16 5 chr3 116541916 116542110 -101495048 - L2 LINE L2 -2911 403 208 25 31 0 0 chr3 116542531 116542563 -101494595 + AT_rich Low_complexity Low_complexity 1 32 0 608 240 25 34 chr3 116542581 116542785 -101494373 - MER110A LTR ERV1 -242 226 25 188 138 0 0 chr3 116542988 116543017 -101494141 - L2 LINE L2 -347 2966 2938 24 32 0 0 chr3 116544589 116544620 -101492538 + AT_rich Low_complexity Low_complexity 1 31 0 864 204 97 11 chr3 116544700 116544938 -101492220 + MSTD LTR MaLR 97 393 -3 224 271 73 31 chr3 116545083 116545179 -101491979 - MIR SINE MIR -1 261 162 215 202 11 112 chr3 116546119 116546208 -101490950 - MIR SINE MIR -60 202 123 507 238 37 37 chr3 116546373 116546537 -101490621 + MIR SINE MIR 3 166 -96 335 226 255 10 chr3 116546629 116546731 -101490427 - L2 LINE L2 -1 3312 3186 767 273 25 35 chr3 116546780 116547066 -101490092 - L2 LINE L2 -1188 2126 1844 1259 181 10 0 chr3 116547381 116547586 -101489572 - AluJb SINE Alu -21 291 85 23 0 0 0 chr3 116548157 116548180 -101488978 + AT_rich Low_complexity Low_complexity 1 23 0 2233 116 0 3 chr3 116548496 116548797 -101488361 - AluSg SINE Alu -9 301 2 1848 141 10 7 chr3 116550320 116550611 -101486547 + AluSx SINE Alu 1 292 -20 1492 262 57 8 chr3 116550674 116551075 -101486083 - LTR16A LTR ERVL -14 436 16 881 337 18 18 chr3 116551500 116551832 -101485326 + HERV16 LTR ERVL 1247 1578 -3418 348 297 81 73 chr3 116551880 116552153 -101485005 + HERV16 LTR ERVL 1706 1980 -3016 939 311 10 39 chr3 116552211 116552520 -101484638 + LTR16B LTR ERVL 12 311 -153 1283 181 27 133 chr3 116552521 116553002 -101484156 - MLT2B1 LTR ERVL 0 520 1 343 270 28 71 chr3 116553162 116553414 -101483744 - L1MEc LINE L1 -5657 739 499 300 301 167 9 chr3 116553435 116553651 -101483507 - L1MEc LINE L1 -5980 416 167 660 227 80 61 chr3 116553745 116554058 -101483100 - L1ME LINE L1 -3177 2903 2585 888 137 0 0 chr3 116555713 116555844 -101481314 + AluJb SINE Alu 1 131 -181 302 293 15 38 chr3 116556074 116556207 -101480951 - L2 LINE L2 -57 3256 3127 1104 145 0 6 chr3 116556208 116556367 -101480791 + AluSg/x SINE Alu 134 291 -19 1766 169 33 56 chr3 116556411 116556807 -101480351 + MLT1B LTR MaLR 4 390 0 381 278 56 75 chr3 116556813 116557065 -101480093 - L2 LINE L2 -230 3083 2837 458 284 47 30 chr3 116557065 116557297 -101479861 + MER20B DNA MER1_type 5 240 -543 418 242 67 95 chr3 116557378 116557590 -101479568 - L1ME LINE L1 -4984 1086 985 1927 148 3 30 chr3 116557590 116557888 -101479270 - AluSx SINE Alu -22 290 1 418 242 67 95 chr3 116557888 116558161 -101478997 - L1ME LINE L1 -5085 985 706 * 566 262 174 34 chr3 116558148 116558939 -101478219 + L1MB8 LINE L1 4848 5748 -418 1309 143 29 79 chr3 116558949 116559264 -101477894 + L1MB8 LINE L1 5880 6178 0 315 292 41 26 chr3 116559268 116559463 -101477695 + L1ME3A LINE L1 5754 5951 -219 270 248 57 48 chr3 116559494 116559599 -101477559 + L1ME3A LINE L1 6051 6156 -14 249 276 76 7 chr3 116559663 116559808 -101477350 + L1ME4a LINE L1 5966 6120 -1 373 206 238 0 chr3 116560212 116560338 -101476820 + MER58C DNA MER1_type 47 202 -13 285 146 18 0 chr3 116561080 116561135 -101476023 - MER20 DNA MER1_type 0 219 164 667 114 32 32 chr3 116561166 116561289 -101475869 - MER20 DNA MER1_type -54 165 43 684 233 23 93 chr3 116561384 116561728 -101475430 - L1MC4 LINE L1 -239 7803 7484 254 226 98 55 chr3 116562221 116562385 -101474773 - L1 LINE L1 -1695 4451 4281 858 250 56 36 chr3 116562447 116562935 -101474223 - L1MC5 LINE L1 -884 6924 6419 771 178 45 13 chr3 116563034 116563191 -101473967 + FRAM SINE Alu 1 162 -4 523 321 87 45 chr3 116563307 116564006 -101473152 - L1 LINE L1 -3128 3018 2161 1057 254 100 11 chr3 116564073 116564406 -101472752 - L2 LINE L2 -157 3156 2797 186 43 0 0 chr3 116565029 116565052 -101472106 + (TG)n Simple_repeat Simple_repeat 2 24 0 2181 118 51 28 chr3 116566638 116566994 -101470164 - THE1B LTR MaLR 0 364 1 11717 87 15 1 chr3 116566994 116568552 -101468606 - THE1B-int LTR MaLR 0 1580 1 1089 118 81 10 chr3 116568552 116568824 -101468334 - THE1B LTR MaLR 0 364 1 2116 92 3 41 chr3 116570958 116571277 -101465881 - AluSp SINE Alu 0 308 1 249 339 61 0 chr3 116571458 116571573 -101465585 + L2 LINE L2 3150 3271 -1 331 244 71 63 chr3 116572154 116572281 -101464877 + MER91B DNA MER1_type 1 128 -62 209 225 54 117 chr3 116572297 116572357 -101464801 + MER91B DNA MER1_type 87 139 -51 2216 100 0 0 chr3 116572357 116572661 -101464497 - AluSc SINE Alu 0 304 1 209 225 54 117 chr3 116572661 116572710 -101464448 + MER91B DNA MER1_type 139 190 0 * 260 194 372 23 chr3 116572710 116572825 -101464333 + MIR SINE MIR 90 249 -13 243 178 22 0 chr3 116572794 116572839 -101464319 + L2 LINE L2 3264 3309 -4 * 196 326 23 23 chr3 116573206 116573292 -101463866 - L2 LINE L2 -1 3271 3186 366 360 137 22 chr3 116573355 116573669 -101463489 - L3 LINE CR1 -184 1393 1044 1268 200 31 114 chr3 116574395 116574850 -101462308 - MLT1C LTR MaLR 0 467 57 1344 171 44 114 chr3 116574850 116575237 -101461921 - MLT1A1 LTR MaLR -4 361 2 1268 200 31 114 chr3 116575237 116575290 -101461868 - MLT1C LTR MaLR -410 57 1 579 265 31 7 chr3 116575530 116575713 -101461445 + MLT1G1 LTR MaLR 1 186 -363 617 169 169 32 chr3 116575812 116575966 -101461192 + MER96 DNA MER1_type 1 175 0 365 42 0 56 chr3 116575968 116576040 -101461118 + (GGGAGA)n Simple_repeat Simple_repeat 5 72 0 497 177 66 9 chr3 116576116 116576261 -101460897 + MLT1H1 LTR MaLR 430 595 0 2342 165 24 47 chr3 116577679 116578188 -101458970 - L1MB3 LINE L1 -1 6182 5686 196 394 68 16 chr3 116578533 116578782 -101458376 + L2 LINE L2 2695 2956 -358 612 281 95 5 chr3 116578939 116579149 -101458009 - MIR SINE MIR -3 259 31 1258 270 33 26 chr3 116579623 116580197 -101456961 - L1MDa LINE L1 -2362 4044 3467 2213 114 0 7 chr3 116580225 116580524 -101456634 - AluSx SINE Alu -15 297 1 1447 233 119 23 chr3 116580533 116582148 -101455010 - L1MDa LINE L1 -3218 3188 1379 239 169 136 0 chr3 116582156 116582215 -101454943 - L1MDa LINE L1 -5124 1285 1219 421 280 51 57 chr3 116582323 116582362 -101454796 + MLT1J2 LTR MaLR 1 39 -491 2029 147 0 16 chr3 116582362 116582668 -101454490 - AluJb SINE Alu -11 301 1 421 280 51 57 chr3 116582668 116582929 -101454229 + MLT1J2 LTR MaLR 39 257 -273 363 266 18 0 chr3 116582952 116583061 -101454097 + MLT1G1 LTR MaLR 482 592 -3 231 61 0 0 chr3 116583338 116583371 -101453787 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 716 376 31 15 chr3 116583437 116583977 -101453181 - HERV16 LTR ERVL -3445 1551 1003 724 357 40 8 chr3 116584635 116585013 -101452145 - LTR16C LTR ERVL -3 488 99 381 216 138 9 chr3 116585149 116585265 -101451893 - Charlie4 DNA MER1_type -1827 134 4 924 180 85 54 chr3 116585281 116585575 -101451583 + AluJo SINE Alu 9 311 -1 323 229 42 21 chr3 116585627 116585723 -101451435 + MLT1J2 LTR MaLR 78 175 -275 427 302 67 17 chr3 116585765 116585885 -101451273 + MLT1J2 LTR MaLR 263 396 -54 269 51 26 0 chr3 116585885 116585924 -101451234 + (TG)n Simple_repeat Simple_repeat 1 40 0 427 302 67 17 chr3 116585924 116585982 -101451176 + MLT1J2 LTR MaLR 396 450 0 467 0 35 0 chr3 116587283 116587341 -101449817 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 28 29 0 0 chr3 116587534 116587569 -101449589 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr3 116587686 116587712 -101449446 + AT_rich Low_complexity Low_complexity 1 26 0 967 213 76 94 chr3 116587713 116588234 -101448924 + MLT1E LTR MaLR 10 593 0 1869 127 0 31 chr3 116588438 116588757 -101448401 + AluJo SINE Alu 1 310 0 28 29 0 0 chr3 116588811 116588846 -101448312 + AT_rich Low_complexity Low_complexity 1 35 0 599 298 32 41 chr3 116588926 116589241 -101447917 - LTR16B LTR ERVL -20 444 133 447 251 125 48 chr3 116589714 116590065 -101447093 - MLT1J2 LTR MaLR -28 422 45 288 0 0 0 chr3 116590065 116590097 -101447061 + (CAA)n Simple_repeat Simple_repeat 2 33 0 21 0 0 0 chr3 116590567 116590588 -101446570 + AT_rich Low_complexity Low_complexity 1 21 0 547 256 56 26 chr3 116591493 116591692 -101445466 - MLT1J2 LTR MaLR -9 441 239 365 280 60 0 chr3 116591717 116591867 -101445291 - MLT1J1 LTR MaLR -287 159 1 305 344 8 16 chr3 116591949 116592077 -101445081 - MIR SINE MIR -124 138 12 373 168 186 53 chr3 116593893 116594006 -101443152 + MLT1E2 LTR MaLR 3 130 -494 297 244 87 39 chr3 116594038 116594165 -101442993 + MLT2C1 LTR ERVL 49 181 -216 * 1853 196 103 39 chr3 116594073 116594587 -101442571 + MLT1E2 LTR MaLR 80 626 0 219 69 0 0 chr3 116594966 116594995 -101442163 + (T)n Simple_repeat Simple_repeat 1 29 0 1155 258 20 17 chr3 116595391 116595686 -101441472 + LTR40a LTR ERVL 1 296 -223 350 330 9 0 chr3 116595686 116595798 -101441360 - MER81 DNA DNA -1 113 1 897 237 27 18 chr3 116595798 116596022 -101441136 + LTR40b LTR ERVL 233 458 -4 1317 226 134 52 chr3 116596193 116596677 -101440481 - L1MEc LINE L1 -3221 2994 2442 2295 121 38 11 chr3 116596677 116597042 -101440116 + THE1C LTR MaLR 1 375 0 1317 226 134 52 chr3 116597042 116597208 -101439950 - L1MEc LINE L1 -3773 2442 2291 1387 151 0 14 chr3 116597216 116597428 -101439730 - AluJb SINE Alu -20 292 84 707 270 32 33 chr3 116597428 116597831 -101439327 - L1MEc LINE L1 -3923 2317 1929 349 308 64 23 chr3 116598018 116598190 -101438968 - L1MEc LINE L1 -5855 350 172 633 203 95 121 chr3 116598230 116598432 -101438726 - L1MC5 LINE L1 -829 7132 6943 1923 188 0 0 chr3 116598432 116598736 -101438422 - AluJb SINE Alu -8 304 1 633 203 95 121 chr3 116598736 116598922 -101438236 - L1MC5 LINE L1 -1018 6943 6754 443 366 16 5 chr3 116598935 116599129 -101438029 - L2 LINE L2 -2911 403 208 25 31 0 0 chr3 116599550 116599582 -101437576 + AT_rich Low_complexity Low_complexity 1 32 0 553 240 25 34 chr3 116599600 116599804 -101437354 - MER110A LTR ERV1 -242 226 25 202 103 0 0 chr3 116600007 116600036 -101437122 - L2 LINE L2 -347 2967 2939 24 32 0 0 chr3 116601609 116601640 -101435518 + AT_rich Low_complexity Low_complexity 1 31 0 799 209 68 13 chr3 116601720 116601958 -101435200 + MSTD LTR MaLR 97 393 -3 222 271 73 31 chr3 116602103 116602199 -101434959 - MIR SINE MIR -1 261 162 211 202 11 112 chr3 116603139 116603228 -101433930 - MIR SINE MIR -60 202 123 508 238 37 37 chr3 116603394 116603558 -101433600 + MIR SINE MIR 3 166 -96 337 226 255 10 chr3 116603650 116603752 -101433406 - L2 LINE L2 -1 3312 3186 769 273 25 35 chr3 116603801 116604087 -101433071 - L2 LINE L2 -1188 2126 1844 1296 176 10 0 chr3 116604402 116604607 -101432551 - AluJb SINE Alu -21 291 85 340 221 149 49 chr3 116606748 116607114 -101430044 - MLT1H LTR MaLR -2 553 152 2571 181 18 95 chr3 116608504 116608608 -101428550 - LTR9 LTR ERV1 0 612 502 2413 88 0 0 chr3 116608608 116608913 -101428245 + AluSq SINE Alu 1 305 -8 2571 181 18 95 chr3 116608913 116609471 -101427687 - LTR9 LTR ERV1 -110 502 1 207 0 0 0 chr3 116610364 116610387 -101426771 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1767 203 26 10 chr3 116612118 116612502 -101424656 - MLT1B LTR MaLR 0 390 1 698 278 106 44 chr3 116612929 116613012 -101424146 - L1MC4a LINE L1 -256 5906 5830 1271 144 18 31 chr3 116613012 116613234 -101423924 - MER20 DNA MER1_type 0 219 1 698 278 106 44 chr3 116613234 116613858 -101423300 - L1MC4a LINE L1 -332 5830 5160 3174 145 50 5 chr3 116614009 116614575 -101422583 - L1MC1 LINE L1 -8 6325 5735 308 250 118 40 chr3 116614592 116614744 -101422414 - L1MC1 LINE L1 -467 5654 5491 3290 190 10 11 chr3 116614745 116615915 -101421243 - L1MC/D LINE L1 -602 5731 4562 908 9 0 0 chr3 116615917 116616026 -101421132 + L1HS LINE L1 6047 6155 0 291 113 0 0 chr3 116616029 116616082 -101421076 + (A)n Simple_repeat Simple_repeat 1 53 0 2677 229 8 7 chr3 116616093 116616827 -101420331 - L1MC/D LINE L1 -1599 4547 3813 21 0 0 0 chr3 116616934 116616955 -101420203 + AT_rich Low_complexity Low_complexity 1 21 0 919 281 116 32 chr3 116617792 116618259 -101418899 + L2 LINE L2 2808 3313 0 29 47 0 0 chr3 116619316 116619359 -101417799 + AT_rich Low_complexity Low_complexity 1 43 0 2664 215 30 43 chr3 116621493 116622190 -101414968 + MER76 LTR ERV 1 688 0 1130 156 52 19 chr3 116622318 116622530 -101414628 - AluJo SINE Alu -9 303 85 219 234 0 0 chr3 116622695 116622742 -101414416 - MIR SINE MIR 0 262 216 442 277 22 21 chr3 116624137 116624304 -101412854 - MLT1H LTR MaLR -349 200 27 1428 238 114 37 chr3 116624324 116625153 -101412005 + L1M4 LINE L1 2859 3780 -2366 2905 209 65 17 chr3 116625153 116625842 -101411316 + MER72 LTR ERV1 1 722 0 1976 143 0 7 chr3 116625942 116626229 -101410929 - AluJb SINE Alu -27 285 1 202 156 31 16 chr3 116626445 116626509 -101410649 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 187 93 47 0 chr3 116627101 116627144 -101410014 + (TA)n Simple_repeat Simple_repeat 2 46 0 274 286 13 0 chr3 116627200 116627277 -101409881 + T-rich Low_complexity Low_complexity 3 80 0 241 188 31 16 chr3 116627488 116627552 -101409606 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 368 296 9 9 chr3 116627881 116627989 -101409169 + L2 LINE L2 3157 3264 -8 180 200 0 0 chr3 116628767 116628807 -101408351 + GA-rich Low_complexity Low_complexity 3 42 0 996 212 5 10 chr3 116629195 116629398 -101407760 + MER20 DNA MER1_type 17 218 -1 1973 151 0 0 chr3 116629400 116629691 -101407467 - AluSx SINE Alu -9 303 13 528 305 73 17 chr3 116630062 116630295 -101406863 - MIR SINE MIR -14 248 3 209 337 153 43 chr3 116630484 116630810 -101406348 + L2 LINE L2 2599 2960 -354 2713 36 9 0 chr3 116630871 116631204 -101405954 + L1PA5 LINE L1 5818 6153 -1 1480 189 47 14 chr3 116631325 116631621 -101405537 + AluJo SINE Alu 1 306 -6 186 246 105 18 chr3 116631646 116631703 -101405455 + L2 LINE L2 3246 3307 -6 184 202 36 95 chr3 116632535 116632619 -101404539 - L3 LINE CR1 -1197 380 302 1710 140 57 106 chr3 116632923 116633329 -101403829 + MLT1B LTR MaLR 1 386 -4 198 0 0 0 chr3 116633716 116633738 -101403420 + (T)n Simple_repeat Simple_repeat 1 22 0 438 262 20 7 chr3 116634162 116634297 -101402861 - MIR SINE MIR -29 233 97 262 290 71 71 chr3 116635302 116635485 -101401673 + L2 LINE L2 103 285 -3029 277 294 63 91 chr3 116635577 116635863 -101401295 - MLT1I LTR MaLR -61 348 71 1103 281 77 59 chr3 116635927 116636522 -101400636 + L2 LINE L2 297 902 -2412 1993 146 73 19 chr3 116636524 116636746 -101400412 + MLT1B LTR MaLR 1 252 -138 2141 118 36 36 chr3 116636746 116637109 -101400049 + THE1B LTR MaLR 2 364 0 1993 146 73 19 chr3 116637109 116637256 -101399902 + MLT1B LTR MaLR 252 390 0 1040 298 124 45 chr3 116637259 116637897 -101399261 + L2 LINE L2 983 1670 -1644 225 154 0 0 chr3 116638380 116638419 -101398739 + (TG)n Simple_repeat Simple_repeat 2 40 0 253 236 0 0 chr3 116639362 116639417 -101397741 - L1MC/D LINE L1 -2151 5657 5603 13485 133 25 27 chr3 116639623 116641726 -101395432 - Tigger1 DNA MER2_type -22 2396 297 2286 115 3 0 chr3 116641726 116642031 -101395127 + AluSx SINE Alu 1 306 -6 13485 133 25 27 chr3 116642031 116642328 -101394830 - Tigger1 DNA MER2_type -2121 297 1 289 278 44 11 chr3 116643812 116643902 -101393256 - L2 LINE L2 -7 3265 3173 294 254 0 0 chr3 116644062 116644117 -101393041 + MIR3 SINE MIR 111 165 -43 357 221 13 0 chr3 116644194 116644271 -101392887 - MER81 DNA DNA -36 78 1 507 291 122 15 chr3 116644622 116644818 -101392340 + MIR SINE MIR 3 219 -43 381 262 32 8 chr3 116648555 116648681 -101388477 - LTR67 LTR ERVL -1 556 428 207 360 144 0 chr3 116649154 116649307 -101387851 + L2 LINE L2 3094 3268 -4 545 296 50 0 chr3 116649403 116649562 -101387596 - MIR SINE MIR -70 192 26 6608 162 32 39 chr3 116649937 116650252 -101386906 - MER4B-int LTR ERV1 -762 5569 5254 2247 114 0 0 chr3 116650252 116650549 -101386609 - AluSx SINE Alu -15 297 1 6608 162 32 39 chr3 116650549 116650910 -101386248 - MER4B-int LTR ERV1 -1077 5254 4892 2966 116 9 0 chr3 116650910 116651340 -101385818 - MER57B LTR ERV1 0 434 1 6608 162 32 39 chr3 116651340 116653248 -101383910 - MER4B-int LTR ERV1 -1439 4892 473 602 168 0 0 chr3 116653340 116653447 -101383711 - FRAM SINE Alu -1 175 69 2371 181 62 22 chr3 116653447 116654253 -101382905 - MER4B-int LTR ERV1 -3220 2726 2631 1800 185 13 0 chr3 116654253 116654561 -101382597 - AluJo SINE Alu 0 312 1 2371 181 62 22 chr3 116654561 116654669 -101382489 - MER4B-int LTR ERV1 -3315 2631 2529 828 201 18 99 chr3 116654669 116654952 -101382206 - MER4B-int LTR ERV1 -3598 2348 2089 297 229 43 0 chr3 116655024 116655094 -101382064 - MER4B-int LTR ERV1 -4658 1673 1601 2377 65 0 0 chr3 116655098 116655392 -101381766 - AluY SINE Alu -17 294 1 1097 138 11 0 chr3 116655724 116655898 -101381260 - LTR47A LTR ERVL 0 452 277 2331 103 0 10 chr3 116656360 116656672 -101380486 - AluSq SINE Alu -4 309 1 724 232 0 6 chr3 116658460 116658628 -101378530 + MLT1A1 LTR MaLR 199 365 0 23 33 0 0 chr3 116659514 116659544 -101377614 + AT_rich Low_complexity Low_complexity 1 30 0 592 279 121 46 chr3 116659828 116660201 -101376957 + MLT1I LTR MaLR 3 403 -6 217 296 19 37 chr3 116660803 116660911 -101376247 + L2 LINE L2 1804 1909 -1405 1731 201 25 107 chr3 116660982 116661533 -101375625 + MLT2B1 LTR ERVL 10 515 0 461 349 72 52 chr3 116661547 116662282 -101374876 + L2 LINE L2 1991 2805 -509 262 292 0 22 chr3 116662288 116662377 -101374781 - MER81 DNA DNA -25 89 3 292 288 72 18 chr3 116662554 116662665 -101374493 + L2 LINE L2 3150 3266 -6 1770 169 78 87 chr3 116663074 116663660 -101373498 + LTR38B LTR ERV1 11 591 -19 421 306 83 58 chr3 116663879 116664483 -101372675 - HAL1 LINE L1 -1397 1110 492 1857 158 20 0 chr3 116664601 116664893 -101372265 - AluSx SINE Alu -14 298 1 207 347 61 14 chr3 116665756 116665903 -101371255 + L2 LINE L2 2554 2707 -607 238 304 0 0 chr3 116668215 116668271 -101368887 - L2 LINE L2 -12 3260 3205 953 210 32 75 chr3 116671136 116671388 -101365770 + MIR SINE MIR 12 252 -10 1969 147 3 3 chr3 116671391 116671690 -101365468 + AluSx SINE Alu 1 299 -13 2113 103 30 0 chr3 116671860 116671980 -101365178 + AluY SINE Alu 1 116 -195 222 37 0 0 chr3 116671980 116672007 -101365151 + (CA)n Simple_repeat Simple_repeat 2 28 0 2113 103 30 0 chr3 116672007 116672188 -101364970 + AluY SINE Alu 116 311 0 428 195 0 0 chr3 116672268 116672355 -101364803 - MIR SINE MIR -5 257 171 253 232 36 0 chr3 116672398 116672454 -101364704 + L2 LINE L2 3256 3313 0 24 0 0 0 chr3 116673426 116673450 -101363708 + AT_rich Low_complexity Low_complexity 1 24 0 1686 102 122 8 chr3 116673450 116673705 -101363453 - AluSg SINE Alu -24 286 3 512 128 0 0 chr3 116675460 116675546 -101361612 + L1MA5A LINE L1 6212 6297 0 227 301 0 27 chr3 116675693 116675766 -101361392 + L2 LINE L2 3241 3311 -2 394 258 45 86 chr3 116676892 116677090 -101360068 + L1ME4a LINE L1 5653 5842 -279 247 326 0 0 chr3 116677284 116677373 -101359785 - MIR SINE MIR -13 249 161 412 248 17 51 chr3 116678096 116678213 -101358945 - MIR SINE MIR -122 140 28 828 212 13 102 chr3 116679085 116679378 -101357780 + MER4B-int LTR ERV1 4755 6075 -257 1791 155 92 0 chr3 116679379 116679714 -101357444 + LTR47A LTR ERVL 1 366 -86 484 255 52 13 chr3 116680090 116680243 -101356915 - MER69A DNA AcHobo -1 176 18 223 344 16 0 chr3 116680544 116680608 -101356550 - L3 LINE CR1 -48 1529 1465 286 330 56 34 chr3 116680651 116680830 -101356328 - L2 LINE L2 -8 3305 3123 183 328 66 0 chr3 116680912 116680973 -101356185 - L2 LINE L2 -366 2947 2883 237 242 179 0 chr3 116680992 116681087 -101356071 + MER20B DNA MER1_type 29 140 -643 248 351 61 12 chr3 116681142 116681307 -101355851 - L2 LINE L2 -419 2895 2723 369 96 0 16 chr3 116681387 116681451 -101355707 - FLAM SINE Alu -2 131 76 229 330 43 9 chr3 116681454 116681569 -101355589 - L3 LINE CR1 -180 1397 1279 2889 140 7 13 chr3 116681665 116682129 -101355029 - LOR1b LTR ERV1 0 461 1 204 282 35 24 chr3 116682602 116682687 -101354471 + MIR SINE MIR 106 191 -71 528 238 166 7 chr3 116683758 116683909 -101353249 - MER5A DNA MER1_type -1 188 14 23 0 0 0 chr3 116684066 116684089 -101353069 + AT_rich Low_complexity Low_complexity 1 23 0 41196 37 0 2 chr3 116684157 116689377 -101347781 + L1P LINE L1 7 5214 -932 48 32 0 0 chr3 116689514 116689576 -101347582 + AT_rich Low_complexity Low_complexity 1 62 0 21 0 0 0 chr3 116689630 116689651 -101347507 + AT_rich Low_complexity Low_complexity 1 21 0 5498 102 10 0 chr3 116690133 116691407 -101345751 - L1PA15 LINE L1 -3 6162 4920 2571 115 3 6 chr3 116692308 116692673 -101344485 + THE1B LTR MaLR 1 364 0 449 315 49 0 chr3 116692815 116692977 -101344181 + MIR SINE MIR 53 222 -40 221 229 95 57 chr3 116693330 116693435 -101343723 + MIR SINE MIR 107 215 -47 636 304 10 25 chr3 116694131 116694332 -101342826 - MIR SINE MIR -31 231 34 26 0 0 0 chr3 116694436 116694462 -101342696 + AT_rich Low_complexity Low_complexity 1 26 0 2075 109 3 0 chr3 116694745 116695062 -101342096 - AluSq SINE Alu 0 318 1 431 113 0 103 chr3 116695083 116695180 -101341978 - L1MA9 LINE L1 -43 6269 6183 2217 101 3 3 chr3 116695671 116695959 -101341199 + AluSx SINE Alu 1 288 -24 22 35 0 0 chr3 116696099 116696128 -101341030 + AT_rich Low_complexity Low_complexity 1 29 0 514 307 56 6 chr3 116697416 116697595 -101339563 - MIR SINE MIR -55 207 20 408 279 68 36 chr3 116698087 116698338 -101338820 + MIR SINE MIR 4 262 0 1129 219 0 9 chr3 116698427 116698646 -101338512 - MSTD LTR MaLR 0 396 180 1785 74 0 4 chr3 116698653 116698897 -101338261 - L1MA2 LINE L1 -4 6300 6058 362 21 21 0 chr3 116698897 116698944 -101338214 + (TTCC)n Simple_repeat Simple_repeat 2 49 0 595 119 79 0 chr3 116698959 116699060 -101338098 - AluSg/x SINE Alu -2 307 199 2020 109 0 4 chr3 116699061 116699336 -101337822 - AluSx SINE Alu -38 274 1 551 97 78 0 chr3 116699336 116699439 -101337719 - L1MA1 LINE L1 -238 6064 5954 746 249 32 0 chr3 116699440 116699625 -101337533 - MSTD LTR MaLR -205 191 1 212 297 16 0 chr3 116699979 116700043 -101337115 + L2 LINE L2 3245 3309 -4 329 339 119 19 chr3 116700043 116700456 -101336702 - L2 LINE L2 -1064 2250 1797 1030 176 73 143 chr3 116703199 116703625 -101333533 + MSTD LTR MaLR 1 396 0 2259 116 33 28 chr3 116703863 116704225 -101332933 - THE1B LTR MaLR 0 364 1 2297 78 7 3 chr3 116706147 116706456 -101330702 + AluSg SINE Alu 1 310 0 205 149 21 21 chr3 116707719 116707766 -101329392 + (TAA)n Simple_repeat Simple_repeat 1 47 0 298 0 0 0 chr3 116708484 116708517 -101328641 + (TTTA)n Simple_repeat Simple_repeat 3 164 0 1986 101 0 24 chr3 116708517 116708805 -101328353 - AluY SINE Alu -30 281 1 218 266 31 16 chr3 116708842 116708906 -101328252 + MIR SINE MIR 34 98 -164 462 350 35 82 chr3 116708922 116709265 -101327893 - L2 LINE L2 0 3272 2946 297 233 41 0 chr3 116709380 116709453 -101327705 + MIR SINE MIR 116 191 -71 500 215 69 21 chr3 116710409 116710553 -101326605 + MER58B DNA MER1_type 191 341 0 24 0 0 0 chr3 116710779 116710803 -101326355 + AT_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr3 116710835 116710857 -101326301 + (A)n Simple_repeat Simple_repeat 1 22 0 33 43 0 0 chr3 116710983 116711030 -101326128 + AT_rich Low_complexity Low_complexity 1 47 0 1171 219 43 10 chr3 116711135 116711436 -101325722 - L1MB8 LINE L1 -13 6165 5855 488 172 35 0 chr3 116711622 116711720 -101325438 + MLT-int LTR MaLR 602 752 -948 1903 219 28 23 chr3 116712061 116712532 -101324626 + MLT1A1-int LTR MaLR 1263 1735 0 1926 219 0 3 chr3 116712532 116712898 -101324260 + MLT1A1 LTR MaLR 1 365 0 492 236 25 54 chr3 116712899 116713102 -101324056 - L1MDb LINE L1 -1566 4840 4644 2576 242 56 25 chr3 116713116 116714185 -101322973 - L1MDb LINE L1 -2112 4294 3193 717 213 40 35 chr3 116714186 116714584 -101322574 - L1MDb LINE L1 -3716 2690 2290 3732 234 78 65 chr3 116714868 116716740 -101320418 - L1MDb LINE L1 -4502 1904 19 24 0 0 0 chr3 116716884 116716908 -101320250 + AT_rich Low_complexity Low_complexity 1 24 0 267 282 107 48 chr3 116718265 116718368 -101318790 + MIR SINE MIR 15 123 -139 25 0 0 0 chr3 116718406 116718431 -101318727 + AT_rich Low_complexity Low_complexity 1 25 0 3405 200 46 34 chr3 116718509 116719883 -101317275 - L1MB7 LINE L1 -24 6160 4769 568 171 0 9 chr3 116720070 116720181 -101316977 + MSTA LTR MaLR 1 110 -318 1996 146 18 44 chr3 116720183 116720566 -101316592 - THE1C LTR MaLR -2 373 1 8330 142 81 9 chr3 116720566 116722041 -101315117 - THE1C-int LTR MaLR 0 1580 1 1039 202 89 25 chr3 116722041 116722323 -101314835 - THE1C LTR MaLR 0 428 129 726 168 22 15 chr3 116722324 116722461 -101314697 + THE1C LTR MaLR 1 138 -237 1192 170 9 31 chr3 116722476 116722705 -101314453 + THE1-int LTR MaLR 658 881 -699 1292 244 114 0 chr3 116722715 116723198 -101313960 - L1MB7 LINE L1 -3421 2725 2188 342 299 56 91 chr3 116723494 116723725 -101313433 + L2 LINE L2 3041 3263 -9 7112 144 23 32 chr3 116723847 116725026 -101312132 - L1PA13 LINE L1 0 7601 6414 1776 154 37 45 chr3 116725026 116725402 -101311756 - THE1C LTR MaLR 0 375 3 9305 146 8 35 chr3 116725404 116727024 -101310134 - THE1C-int LTR MaLR 0 1580 4 1779 179 46 27 chr3 116727027 116727395 -101309763 - THE1C LTR MaLR 0 375 1 7112 144 23 32 chr3 116727395 116728051 -101309107 - L1PA13 LINE L1 -1190 6411 5751 2193 122 0 3 chr3 116728051 116728346 -101308812 - AluSg SINE Alu -16 294 1 7112 144 23 32 chr3 116728346 116728486 -101308672 - L1PA13 LINE L1 -1850 5751 5611 1615 170 203 11 chr3 116728486 116728845 -101308313 - MSTA LTR MaLR 0 428 1 7112 144 23 32 chr3 116728845 116729076 -101308082 - L1PA13 LINE L1 -1990 5611 5399 245 108 0 0 chr3 116729169 116729206 -101307952 - L1 LINE L1 -2201 3945 3909 12562 201 27 22 chr3 116729250 116730700 -101306458 - L1PA13 LINE L1 -2237 5347 3905 2221 118 3 0 chr3 116730700 116730989 -101306169 - AluSp SINE Alu -23 290 1 12562 201 27 22 chr3 116730989 116731111 -101306047 - L1PA13 LINE L1 -3679 3905 3785 1960 159 7 3 chr3 116731111 116731413 -101305745 - AluSx SINE Alu -9 303 1 12562 201 27 22 chr3 116731413 116733394 -101303764 - L1PA13 LINE L1 -3799 3785 967 1447 163 4 20 chr3 116733402 116733653 -101303505 - AluJb SINE Alu -14 298 52 1989 108 13 65 chr3 116734151 116734523 -101302635 + MER4A LTR ERV1 1 353 -311 477 88 0 0 chr3 116734594 116734662 -101302496 + MER4A LTR ERV1 356 423 -241 2185 115 0 10 chr3 116734730 116735043 -101302115 - AluSg SINE Alu 0 310 1 27627 121 17 57 chr3 116735048 116739363 -101297795 - L1PA8 LINE L1 0 6172 2203 2194 115 0 0 chr3 116739363 116739651 -101297507 + AluSc SINE Alu 4 291 -18 27627 121 17 57 chr3 116739651 116741752 -101295406 - L1PA8 LINE L1 -3969 2203 20 407 211 197 26 chr3 116741752 116741904 -101295254 + MER4C LTR ERV1 288 465 0 22 0 0 0 chr3 116741986 116742008 -101295150 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr3 116742814 116742840 -101294318 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr3 116743104 116743128 -101294030 + AT_rich Low_complexity Low_complexity 1 24 0 396 200 80 0 chr3 116743137 116743212 -101293946 - MER5A DNA MER1_type -1 188 108 623 71 24 0 chr3 116743213 116743297 -101293861 - AluY SINE Alu -12 299 214 521 202 19 0 chr3 116743297 116743401 -101293757 - MER5A DNA MER1_type -77 112 7 331 250 0 0 chr3 116744655 116744731 -101292427 - LTR16A LTR ERVL -10 440 365 593 27 0 0 chr3 116744763 116744836 -101292322 - MLT2B2 LTR ERVL -442 73 1 409 289 13 19 chr3 116744878 116745037 -101292121 - LTR16A LTR ERVL -162 288 131 271 291 106 73 chr3 116745315 116745494 -101291664 - MIR SINE MIR -58 204 20 302 0 20 40 chr3 116747242 116747292 -101289866 - L1PA3 LINE L1 -3 6152 6104 1422 217 66 76 chr3 116747411 116747848 -101289310 - L1M4 LINE L1 -2231 3915 3484 195 42 0 0 chr3 116747848 116747872 -101289286 + (TTA)n Simple_repeat Simple_repeat 1 24 0 1422 217 66 76 chr3 116747872 116747997 -101289161 - L1M4 LINE L1 -2662 3484 3359 1927 147 123 23 chr3 116748007 116748396 -101288762 + MSTA LTR MaLR 1 428 0 8395 130 11 42 chr3 116748398 116749910 -101287248 + MSTA-int LTR MaLR 3 1468 -112 311 282 10 0 chr3 116750031 116750134 -101287024 + L1ME LINE L1 5579 5682 -439 6688 112 16 8 chr3 116750152 116751230 -101285928 + L1P LINE L1 12 1097 -5049 3480 181 62 19 chr3 116751367 116752363 -101284795 - L1MD2 LINE L1 -275 6084 5053 451 256 8 1 chr3 116752370 116752501 -101284657 - L1MD2 LINE L1 -1172 4974 4838 237 172 0 17 chr3 116752567 116752625 -101284533 - L1MD2 LINE L1 -1443 4703 4647 229 242 137 65 chr3 116752956 116753109 -101284049 - L3 LINE CR1 -337 1240 1077 182 226 145 32 chr3 116753124 116753186 -101283972 - MIR SINE MIR 0 262 194 1185 232 19 25 chr3 116753190 116753552 -101283606 - L1MD2 LINE L1 0 6359 6000 64 71 0 0 chr3 116753666 116753793 -101283365 + GC_rich Low_complexity Low_complexity 1 127 0 386 314 92 52 chr3 116804105 116804528 -101232630 - LTR16A LTR ERVL -9 441 2 2834 276 141 30 chr3 116805750 116807096 -101230062 + L2 LINE L2 1269 2763 -551 1106 168 28 14 chr3 116807097 116807140 -101230018 - MLT2C1 LTR ERVL 0 397 356 851 0 10 0 chr3 116807140 116807239 -101229919 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 1106 168 28 14 chr3 116807239 116807409 -101229749 - MLT2C1 LTR ERVL -41 356 181 2619 167 21 13 chr3 116807432 116808171 -101228987 + LTR1B LTR ERV1 1 826 0 757 191 13 0 chr3 116808173 116808325 -101228833 - MLT2C1 LTR ERVL -243 154 1 640 291 258 20 chr3 116808331 116808763 -101228395 + L2 LINE L2 2772 3301 -12 274 308 56 28 chr3 116808808 116808951 -101228207 + MIR SINE MIR 2 148 -114 1319 177 16 17 chr3 116809531 116809825 -101227333 - MER61B LTR ERV1 -37 388 1 441 0 0 0 chr3 116811090 116811139 -101226019 + (CA)n Simple_repeat Simple_repeat 2 50 0 896 104 0 0 chr3 116811808 116811923 -101225235 + AluSq SINE Alu 126 240 -73 33 66 0 0 chr3 116811936 116811997 -101225161 + AT_rich Low_complexity Low_complexity 1 61 0 23 33 0 0 chr3 116812597 116812627 -101224531 + AT_rich Low_complexity Low_complexity 1 30 0 1302 204 36 18 chr3 116812671 116812951 -101224207 - L1MB1 LINE L1 0 6168 5884 426 260 160 59 chr3 116813147 116813366 -101223792 + MIR SINE MIR 18 258 -4 326 331 16 24 chr3 116813377 116813501 -101223657 + L2 LINE L2 3190 3312 -1 207 349 23 0 chr3 116813499 116813585 -101223573 - MIR SINE MIR -10 252 165 * 893 215 27 43 chr3 116813674 116813845 -101223313 - MLT1D LTR MaLR -2 503 336 240 35 0 0 chr3 116813845 116813874 -101223284 + (TTG)n Simple_repeat Simple_repeat 2 30 0 893 215 27 43 chr3 116813874 116813958 -101223200 - MLT1D LTR MaLR -169 336 252 371 200 0 30 chr3 116814028 116814128 -101223030 + L1 LINE L1 3266 3362 -2784 469 251 110 21 chr3 116815420 116815611 -101221547 + MIR SINE MIR 47 254 -8 290 299 62 31 chr3 116816226 116816323 -101220835 + MIR SINE MIR 38 137 -71 373 287 43 9 chr3 116817440 116817555 -101219603 + MIR SINE MIR 33 151 -57 218 232 0 43 chr3 116818415 116818484 -101218674 + (CAGAGA)n Simple_repeat Simple_repeat 4 69 0 796 208 0 24 chr3 116818555 116818723 -101218435 + AluSg/x SINE Alu 126 289 -21 269 274 19 126 chr3 116818784 116819047 -101218111 - L1MB1 LINE L1 -420 5701 5467 224 231 19 0 chr3 116819658 116819710 -101217448 + CT-rich Low_complexity Low_complexity 3 55 0 27 29 0 0 chr3 116820318 116820352 -101216806 + AT_rich Low_complexity Low_complexity 1 34 0 203 171 98 0 chr3 116820733 116820774 -101216384 - MIR SINE MIR -8 254 210 2488 41 3 0 chr3 116820990 116821285 -101215873 + AluY SINE Alu 1 296 -15 320 254 30 0 chr3 116821651 116821718 -101215440 - L1MDb LINE L1 -6332 77 9 2457 61 0 0 chr3 116822002 116822296 -101214862 - AluY SINE Alu -15 296 3 1383 239 39 8 chr3 116823053 116823413 -101213745 - MLT1A2 LTR MaLR 0 374 4 256 163 23 0 chr3 116824100 116824143 -101213015 - Zaphod DNA AcHobo -10 4021 3978 2039 110 31 0 chr3 116826025 116826316 -101210842 + AluSx SINE Alu 1 300 -12 770 85 8 17 chr3 116826862 116827001 -101210157 + L1PA8 LINE L1 6054 6172 0 207 286 11 44 chr3 116827295 116827386 -101209772 + MIR SINE MIR 121 208 -54 1854 179 46 0 chr3 116827831 116828178 -101208980 - MLT1A1 LTR MaLR 0 365 3 320 304 64 1 chr3 116828202 116828318 -101208840 + MIR SINE MIR 36 155 -53 24 32 0 0 chr3 116828503 116828534 -101208624 + AT_rich Low_complexity Low_complexity 1 31 0 204 200 0 0 chr3 116829156 116829191 -101207967 + (TTAGGG)n Simple_repeat Simple_repeat 2 36 0 7966 80 8 2 chr3 116829213 116830264 -101206894 + MER11C LTR ERVK 1 1057 -14 423 320 41 0 chr3 116832067 116832214 -101204944 - L3b LINE CR1 -329 1254 1102 828 177 20 0 chr3 116833058 116833205 -101203953 - Tigger4(Zombi) DNA MER2_type -2581 150 1 23 33 0 0 chr3 116834974 116835004 -101202154 + AT_rich Low_complexity Low_complexity 1 30 0 336 274 62 18 chr3 116835051 116835164 -101201994 - MIR SINE MIR -114 148 31 495 269 128 43 chr3 116835291 116835618 -101201540 - MLT1H1 LTR MaLR 0 555 201 419 111 0 0 chr3 116835909 116835972 -101201186 + Alu SINE Alu 242 304 -8 191 312 0 39 chr3 116836130 116836207 -101200951 + MIR SINE MIR 185 258 -4 2837 214 53 2 chr3 116836430 116837050 -101200108 - MER82 DNA MER2_type -1 652 1 1841 206 44 27 chr3 116837227 116837707 -101199451 + L1PB4 LINE L1 4888 5375 -771 * 2048 140 25 12 chr3 116837694 116838193 -101198965 + L1MA3 LINE L1 3299 3802 -3763 12461 177 29 14 chr3 116838256 116841535 -101195623 + L1MA3 LINE L1 4040 7362 -362 1372 100 84 8 chr3 116841556 116841805 -101195353 + L1MA3 LINE L1 7452 7719 -5 3797 133 11 12 chr3 116841813 116841963 -101195195 + L1PB4 LINE L1 5352 5501 -655 2297 174 24 7 chr3 116841963 116842382 -101194776 - MSTB LTR MaLR 0 426 1 3797 133 11 12 chr3 116842382 116842869 -101194289 + L1PB4 LINE L1 5501 5988 -168 220 406 89 0 chr3 116843344 116843467 -101193691 - L2 LINE L2 -1 3271 3138 206 366 12 7 chr3 116843632 116843650 -101193508 - MER5A DNA MER1_type -42 136 120 582 253 145 6 chr3 116843650 116843816 -101193342 - MER5A DNA MER1_type 0 189 1 206 366 12 7 chr3 116843816 116843914 -101193244 - MER5A DNA MER1_type -58 120 21 199 286 122 0 chr3 116844257 116844306 -101192852 - L2 LINE L2 -12 3260 3206 4976 133 11 13 chr3 116844634 116845428 -101191730 + L1PA16 LINE L1 5365 6157 -9 2249 120 0 16 chr3 116846571 116846888 -101190270 + AluSx SINE Alu 1 312 0 26 0 0 0 chr3 116847132 116847158 -101190000 + AT_rich Low_complexity Low_complexity 1 26 0 672 314 12 21 chr3 116847697 116847939 -101189219 + MIR SINE MIR 18 257 -5 2201 214 50 54 chr3 116847941 116848330 -101188828 - MLT1E1 LTR MaLR -1 653 264 2052 121 24 0 chr3 116848330 116848627 -101188531 - AluSx SINE Alu -8 304 1 2201 214 50 54 chr3 116848627 116848648 -101188510 - MLT1E1 LTR MaLR -390 264 244 2059 108 0 37 chr3 116848648 116848944 -101188214 - AluSg SINE Alu -25 285 1 2201 214 50 54 chr3 116848944 116849185 -101187973 - MLT1E1 LTR MaLR -410 244 3 34 24 0 0 chr3 116849189 116849230 -101187928 + AT_rich Low_complexity Low_complexity 1 41 0 1688 192 0 3 chr3 116849257 116849544 -101187614 + AluJb SINE Alu 1 286 -26 2124 179 14 3 chr3 116850209 116850561 -101186597 + LTR18A LTR ERVL 1 356 -1 2151 129 0 3 chr3 116851543 116851846 -101185312 - AluSq SINE Alu -11 302 1 1825 216 23 59 chr3 116851896 116852420 -101184738 + MLT1D LTR MaLR 1 505 0 371 310 98 44 chr3 116852683 116852886 -101184272 + MIR SINE MIR 48 261 -1 2205 107 7 0 chr3 116853065 116853363 -101183795 + AluSx SINE Alu 1 300 -12 1345 238 90 28 chr3 116857089 116857599 -101179559 - L1ME2 LINE L1 -106 6058 5495 309 185 0 0 chr3 116857632 116857697 -101179461 + (TA)n Simple_repeat Simple_repeat 2 66 0 3356 78 13 9 chr3 116857991 116858442 -101178716 + MLT2A2 LTR ERVL 1 453 0 434 277 40 14 chr3 116858913 116859061 -101178097 - LTR41 LTR ERVL -604 169 18 200 302 188 21 chr3 116859088 116859184 -101177974 - MIR SINE MIR -150 112 1 504 48 0 0 chr3 116860172 116860235 -101176923 + (TG)n Simple_repeat Simple_repeat 1 63 0 2367 176 31 43 chr3 116860545 116861062 -101176096 - MER67D LTR ERV1 0 514 4 270 81 0 0 chr3 116861063 116861100 -101176058 + (TAG)n Simple_repeat Simple_repeat 1 37 0 218 234 47 16 chr3 116861434 116861498 -101175660 + MIR SINE MIR 161 226 -36 361 158 0 0 chr3 116863509 116863593 -101173565 - AluJ/FRAM SINE Alu 0 309 226 1781 185 0 0 chr3 116863595 116863892 -101173266 - AluJb SINE Alu -15 297 1 506 276 133 10 chr3 116864474 116864767 -101172391 + L1MD3 LINE L1 5808 6136 -1859 2396 194 60 4 chr3 116864778 116865310 -101171848 + L1MD3 LINE L1 7434 7995 0 319 341 22 29 chr3 116865926 116866064 -101171094 - MIR3 SINE MIR -21 187 51 2310 220 47 19 chr3 116866585 116867181 -101169977 + MER90 LTR ERV1 2 614 0 394 105 0 53 chr3 116867204 116867280 -101169878 + L1PA15 LINE L1 6093 6164 -1 248 0 31 0 chr3 116867387 116867419 -101169739 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2021 125 13 3 chr3 116867421 116867726 -101169432 + AluSx SINE Alu 4 311 -1 571 146 0 0 chr3 116868415 116868497 -101168661 - L1P3 LINE L1 -6372 89 8 1255 102 16 0 chr3 116868498 116868685 -101168473 + L1PA7 LINE L1 5965 6154 0 3966 122 8 29 chr3 116869599 116870041 -101167117 - MER39B LTR ERV1 -2 651 225 2129 123 0 0 chr3 116870041 116870363 -101166795 - AluSq SINE Alu 0 322 1 3966 122 8 29 chr3 116870363 116870584 -101166574 - MER39B LTR ERV1 -428 225 1 809 288 34 52 chr3 116870598 116870865 -101166293 - MIR SINE MIR 0 262 1 2502 64 0 0 chr3 116872907 116873205 -101163953 - AluSc SINE Alu -11 298 1 2217 106 3 10 chr3 116873246 116873557 -101163601 - AluSc SINE Alu 0 309 1 24 53 0 0 chr3 116874655 116874693 -101162465 + AT_rich Low_complexity Low_complexity 1 38 0 19868 170 56 10 chr3 116874816 116879228 -101157930 + L1PA16 LINE L1 13 4629 -2936 258 32 0 0 chr3 116879284 116879315 -101157843 + (T)n Simple_repeat Simple_repeat 1 31 0 5002 163 18 28 chr3 116879599 116880187 -101156971 + L1PA16 LINE L1 6148 6741 -844 1824 113 27 3 chr3 116880187 116880488 -101156670 + L1MA2 LINE L1 5997 6304 0 5002 163 18 28 chr3 116880488 116881343 -101155815 + L1PA16 LINE L1 6741 7585 0 1180 193 104 79 chr3 116882141 116882633 -101154525 - LTR24B LTR ERV1 -7 569 66 3017 273 109 40 chr3 116882823 116883978 -101153180 + L1MEc LINE L1 660 1733 -4482 2128 102 44 0 chr3 116883978 116884272 -101152886 + AluSc SINE Alu 1 307 -2 3017 273 109 40 chr3 116884272 116886584 -101150574 + L1MEc LINE L1 1733 4358 -1857 1698 176 69 32 chr3 116886584 116886780 -101150378 - MLT1B LTR MaLR 0 390 203 2316 102 7 0 chr3 116886780 116887084 -101150074 - AluSq SINE Alu -7 306 1 1698 176 69 32 chr3 116887084 116887263 -101149895 - MLT1B LTR MaLR -187 203 1 3017 273 109 40 chr3 116887263 116887430 -101149728 + L1MEc LINE L1 4358 4512 -1703 959 248 54 33 chr3 116887440 116887706 -101149452 + L1ME2 LINE L1 5817 6094 -70 2100 98 33 0 chr3 116887706 116888016 -101149142 + AluSx SINE Alu 1 319 0 959 248 54 33 chr3 116888016 116888079 -101149079 + L1ME2 LINE L1 6094 6154 -10 342 0 0 0 chr3 116888079 116888117 -101149041 + (TG)n Simple_repeat Simple_repeat 2 39 0 423 319 29 81 chr3 116888156 116888255 -101148903 + MIR SINE MIR 3 106 -156 1452 115 60 0 chr3 116888255 116888472 -101148686 - MER30 DNA MER1_type 0 230 1 423 319 29 81 chr3 116888472 116888645 -101148513 + MIR SINE MIR 106 261 -1 252 314 48 9 chr3 116888844 116888949 -101148209 + MIR SINE MIR 154 262 0 3854 175 21 9 chr3 116890230 116891545 -101145613 - L1PA16 LINE L1 -9 6157 4652 948 245 23 23 chr3 116891977 116892287 -101144871 - LTR37A LTR ERV1 -3 423 114 1981 109 58 4 chr3 116892421 116892696 -101144462 + AluSc SINE Alu 1 290 -19 272 305 149 90 chr3 116893727 116894170 -101142988 - L2 LINE L2 0 3313 2845 988 272 90 30 chr3 116894392 116894776 -101142382 - MLT1J LTR MaLR -45 466 52 412 82 0 196 chr3 116894776 116894873 -101142285 - MADE1 DNA Mariner 0 80 3 988 272 90 30 chr3 116894873 116894922 -101142236 - MLT1J LTR MaLR -459 52 7 344 339 16 7 chr3 116894994 116895130 -101142028 + MIR SINE MIR 19 154 -70 516 213 175 38 chr3 116896907 116897013 -101140145 + MIR SINE MIR 16 106 -156 2411 123 5 14 chr3 116897013 116897380 -101139778 - THE1B LTR MaLR 0 364 1 516 213 175 38 chr3 116897380 116897433 -101139725 + MIR SINE MIR 106 197 -65 204 330 102 11 chr3 116898092 116898180 -101138978 - L2 LINE L2 -55 3217 3122 260 355 0 65 chr3 116898211 116898349 -101138809 - L2 LINE L2 -240 3032 2904 246 81 0 0 chr3 116898800 116898837 -101138321 + (CATA)n Simple_repeat Simple_repeat 1 37 0 612 272 72 10 chr3 116900238 116900433 -101136725 - MIR SINE MIR 0 262 56 302 355 114 47 chr3 116901897 116902238 -101134920 - L2 LINE L2 -4 3268 2905 442 277 85 23 chr3 116902536 116902713 -101134445 - L2 LINE L2 -4 3309 3122 744 314 66 50 chr3 116903184 116903748 -101133410 - L1MCc LINE L1 -5827 596 24 593 163 19 50 chr3 116903867 116904027 -101133131 + L1MA7 LINE L1 6137 6291 0 21 36 0 0 chr3 116904027 116904055 -101133103 + AT_rich Low_complexity Low_complexity 1 28 0 6015 184 149 38 chr3 116905917 116906346 -101130812 + MER52A LTR ERV1 1 381 -1374 1983 149 39 33 chr3 116906346 116906708 -101130450 - THE1B LTR MaLR 0 364 1 6015 184 149 38 chr3 116906708 116907792 -101129366 + MER52A LTR ERV1 381 1755 0 1907 146 67 17 chr3 116907980 116908337 -101128821 - THE1C LTR MaLR 0 375 1 4509 160 13 28 chr3 116909293 116910082 -101127076 + LTR39 LTR ERV1 5 781 -2 377 238 12 101 chr3 116910386 116910484 -101126674 + MLT1K LTR MaLR 325 403 -185 622 222 90 16 chr3 116910484 116910673 -101126485 - MER3 DNA MER1_type -2 207 5 377 238 12 101 chr3 116910673 116910742 -101126416 + MLT1K LTR MaLR 403 477 -111 2759 193 99 10 chr3 116911050 116911657 -101125501 - MER67B LTR ERV1 0 661 1 408 314 90 0 chr3 116911702 116911858 -101125300 - MIR SINE MIR -73 189 20 192 40 0 0 chr3 116913240 116913265 -101123893 + (CA)n Simple_repeat Simple_repeat 1 25 0 221 269 77 0 chr3 116914010 116914062 -101123096 + L2 LINE L2 3217 3272 0 800 309 27 30 chr3 116914275 116914611 -101122547 - MLT1J2 LTR MaLR -8 442 108 343 312 74 25 chr3 116914671 116914873 -101122285 - L2 LINE L2 -575 2739 2528 606 250 58 17 chr3 116916161 116916333 -101120825 - MIR SINE MIR -71 191 13 236 292 0 0 chr3 116917158 116917223 -101119935 - LTR16A LTR ERVL -5 445 381 3003 141 6 20 chr3 116917230 116917734 -101119424 - LOR1a LTR ERV1 0 497 1 693 108 0 20 chr3 116917734 116917836 -101119322 - LOR1a-int LTR ERV1 0 8120 8021 1501 152 95 13 chr3 116917893 116918217 -101118941 - LOR1a-int LTR ERV1 -595 6163 3777 337 157 56 22 chr3 116918220 116918309 -101118849 - LOR1a-int LTR ERV1 -1911 4687 4596 10876 114 63 41 chr3 116918524 116919772 -101117386 - LOR1a-int LTR ERV1 -4342 3778 2559 462 18 0 0 chr3 116919772 116919827 -101117331 + (CA)n Simple_repeat Simple_repeat 2 56 0 10876 114 63 41 chr3 116919827 116919911 -101117247 - LOR1a-int LTR ERV1 -5561 2559 2478 2237 131 0 0 chr3 116919911 116920216 -101116942 + AluSx SINE Alu 1 305 -7 10876 114 63 41 chr3 116920216 116920505 -101116653 - LOR1a-int LTR ERV1 -5642 2478 2197 2380 69 3 0 chr3 116920505 116920808 -101116350 - AluY SINE Alu -7 304 1 10876 114 63 41 chr3 116920808 116921249 -101115909 - LOR1a-int LTR ERV1 -5923 2197 1668 1219 62 0 0 chr3 116921370 116921514 -101115644 - AluY SINE Alu -167 144 1 11776 123 30 47 chr3 116921520 116923098 -101114060 - LOR1a-int LTR ERV1 -6010 2110 530 274 196 0 0 chr3 116923098 116923144 -101114014 - 5S rRNA rRNA -74 47 2 11776 123 30 47 chr3 116923144 116923665 -101113493 - LOR1a-int LTR ERV1 -7590 530 2 3112 138 16 6 chr3 116923666 116924158 -101113000 - LOR1a LTR ERV1 0 497 1 1989 121 0 3 chr3 116924160 116924475 -101112683 - AluSg SINE Alu 0 314 1 267 311 57 0 chr3 116924499 116924605 -101112553 - LTR16A LTR ERVL -109 341 230 251 191 15 0 chr3 116924636 116924704 -101112454 + (TA)n Simple_repeat Simple_repeat 2 70 0 2533 65 3 3 chr3 116924732 116925040 -101112118 - AluSp SINE Alu -4 309 2 25 90 0 0 chr3 116925118 116925185 -101111973 + AT_rich Low_complexity Low_complexity 1 67 0 203 186 17 34 chr3 116925507 116925566 -101111592 + A-rich Low_complexity Low_complexity 2 59 0 21 0 0 0 chr3 116925773 116925794 -101111364 + AT_rich Low_complexity Low_complexity 1 21 0 238 28 0 0 chr3 116928739 116928775 -101108383 - Alu SINE Alu -4 295 260 309 347 86 66 chr3 116929818 116930191 -101106967 - L2 LINE L2 -84 3188 2824 1050 282 72 19 chr3 116930191 116930567 -101106591 + MSTD LTR MaLR 1 396 0 309 347 86 66 chr3 116930567 116931043 -101106115 - L2 LINE L2 -448 2824 2323 1720 208 108 19 chr3 116931336 116931797 -101105361 + MLT1D LTR MaLR 3 504 -1 1237 174 24 0 chr3 116931946 116932158 -101105000 - L1MDa LINE L1 -6269 271 55 2193 73 0 60 chr3 116932454 116932768 -101104390 - AluY SINE Alu -16 295 1 1738 161 46 0 chr3 116933384 116933664 -101103494 + AluSx SINE Alu 1 293 -19 2402 90 0 0 chr3 116935286 116935586 -101101572 + AluSq SINE Alu 1 300 -13 884 205 9 18 chr3 116935652 116935881 -101101277 + L1MA7 LINE L1 6065 6291 0 343 189 0 22 chr3 116935950 116936040 -101101118 + GA-rich Low_complexity Low_complexity 4 91 0 232 339 8 8 chr3 116936274 116936401 -101100757 + HAL1 LINE L1 1441 1567 -940 335 280 72 70 chr3 116936833 116937358 -101099800 + L1MEd LINE L1 623 1148 -4971 695 298 65 60 chr3 116937380 116938708 -101098450 + L1 LINE L1 3366 4701 -1445 2456 84 0 0 chr3 116938712 116939023 -101098135 + AluSq SINE Alu 1 311 -2 474 254 32 8 chr3 116939188 116939314 -101097844 + MER67C LTR ERV1 212 340 -370 10522 160 12 32 chr3 116939337 116940567 -101096591 + L1PA8 LINE L1 638 1815 -4331 2073 142 0 3 chr3 116940567 116940869 -101096289 - AluSx SINE Alu -11 301 1 10522 160 12 32 chr3 116940869 116941641 -101095517 + L1PA8 LINE L1 1815 2601 -3545 17595 104 12 0 chr3 116941646 116945069 -101092089 + L1PA8 LINE L1 2746 6172 0 321 313 109 7 chr3 116945106 116945396 -101091762 + L1 LINE L1 4734 5092 -1054 1307 95 16 0 chr3 116947281 116947470 -101089688 + L1PB1 LINE L1 5957 6148 -3 329 390 67 25 chr3 116949363 116949722 -101087436 - L2 LINE L2 -11 3261 2888 1604 209 50 44 chr3 116949779 116950115 -101087043 - MER31B LTR ERV1 -16 645 107 2320 85 3 28 chr3 116950115 116950433 -101086725 + AluSg SINE Alu 1 310 0 1604 209 50 44 chr3 116950433 116950526 -101086632 - MER31B LTR ERV1 -554 107 16 591 237 56 28 chr3 116950608 116950857 -101086301 + L1MEd LINE L1 895 1150 -4969 818 266 83 14 chr3 116950899 116951188 -101085970 + MLT1E LTR MaLR 222 530 -63 196 28 83 0 chr3 116952395 116952431 -101084727 + T-rich Low_complexity Low_complexity 2 40 0 1959 137 3 7 chr3 116952434 116952719 -101084439 - AluSx SINE Alu -28 284 1 869 229 64 14 chr3 116953080 116953298 -101083860 - MLT1C LTR MaLR 0 467 239 233 202 48 48 chr3 116953343 116953427 -101083731 - MLT1C LTR MaLR -439 187 104 214 195 0 0 chr3 116953730 116953771 -101083387 + (TTA)n Simple_repeat Simple_repeat 1 41 0 420 302 142 13 chr3 116953993 116954218 -101082940 + HAL1 LINE L1 1390 1643 -864 2729 13 0 0 chr3 116954265 116954564 -101082594 + AluY SINE Alu 1 299 -12 266 267 53 62 chr3 116954847 116955087 -101082071 + LTR48B LTR ERV1 11 432 -275 302 197 5 58 chr3 116955090 116955112 -101082046 + (TA)n Simple_repeat Simple_repeat 1 23 -155 189 0 0 0 chr3 116955112 116955133 -101082025 + (CA)n Simple_repeat Simple_repeat 2 22 0 302 197 5 58 chr3 116955133 116955298 -101081860 + (TA)n Simple_repeat Simple_repeat 23 178 0 203 88 29 0 chr3 116955334 116955368 -101081790 + (TATATG)n Simple_repeat Simple_repeat 3 37 0 350 98 52 52 chr3 116955424 116955598 -101081560 + (TA)n Simple_repeat Simple_repeat 1 174 0 375 288 28 14 chr3 116955598 116955736 -101081422 - MIR SINE MIR -55 153 25 487 320 53 14 chr3 116955970 116956251 -101080907 + L1ME3A LINE L1 5595 5886 -284 24 53 0 0 chr3 116956277 116956315 -101080843 + AT_rich Low_complexity Low_complexity 1 38 0 698 238 74 13 chr3 116956543 116956789 -101080369 - MER39 LTR ERV1 0 687 428 36 0 0 0 chr3 116956837 116956873 -101080285 + AT_rich Low_complexity Low_complexity 1 36 0 2034 109 55 0 chr3 116956873 116957148 -101080010 - AluSx SINE Alu -22 290 1 2445 65 3 13 chr3 116957510 116957816 -101079342 - AluSp SINE Alu -10 303 1 336 400 0 11 chr3 116957817 116958007 -101079151 - MER5A DNA MER1_type 0 189 2 2535 68 0 0 chr3 116959515 116959822 -101077336 - AluY SINE Alu -4 307 1 2214 86 0 58 chr3 116960447 116960772 -101076386 - AluY SINE Alu -5 306 1 339 237 0 13 chr3 116961069 116961145 -101076013 - MER94 DNA DNA -59 75 1 762 295 52 16 chr3 116961160 116961411 -101075747 - MIR SINE MIR 0 262 3 242 269 317 0 chr3 116961463 116961567 -101075591 - MIR SINE MIR -108 154 18 2165 125 0 6 chr3 116962416 116962728 -101074430 + AluSg SINE Alu 1 310 0 249 33 0 0 chr3 116963230 116963245 -101073913 + (GGAA)n Simple_repeat Simple_repeat 1 45 0 249 33 0 0 chr3 116963245 116963275 -101073883 + (GGAA)n Simple_repeat Simple_repeat 4 33 0 430 214 112 18 chr3 116963276 116963472 -101073686 + L1 LINE L1 4396 4611 -1535 1966 124 15 113 chr3 116963475 116964211 -101072947 - L1P4 LINE L1 -560 5606 4906 243 242 0 0 chr3 116964240 116964302 -101072856 + CT-rich Low_complexity Low_complexity 4 65 0 3415 124 20 9 chr3 116964390 116964930 -101072228 + L1PA15 LINE L1 5618 6163 -2 1002 223 28 0 chr3 116964976 116965187 -101071971 - MER34 LTR ERV1 -325 217 1 2609 159 61 0 chr3 116965187 116965676 -101071482 + L1MA9 LINE L1 5789 6307 -5 646 288 101 30 chr3 116966733 116967101 -101070057 + HAL1 LINE L1 1301 1694 -813 788 135 23 8 chr3 116967106 116967239 -101069919 - MER88 LTR ERVL 0 464 330 9532 200 45 20 chr3 116967265 116969189 -101067969 + L1MA10 LINE L1 2752 4801 -1533 2322 108 0 0 chr3 116969189 116969486 -101067672 - AluSg SINE Alu -13 297 1 9532 200 45 20 chr3 116969486 116971058 -101066100 + L1MA10 LINE L1 4801 6331 -3 228 274 68 68 chr3 116971398 116971664 -101065494 + L1MC/D LINE L1 5306 5571 -2237 5736 30 1 1 chr3 116971839 116972845 -101064313 + L1P1 LINE L1 4700 5705 -450 475 107 155 10 chr3 116973073 116973176 -101063982 + MIR SINE MIR 66 183 -79 2411 51 3 19 chr3 116973321 116973634 -101063524 - AluY SINE Alu -3 308 1 1425 200 75 33 chr3 116975086 116975318 -101061840 + L1MC/D LINE L1 4800 5021 -1285 2066 67 0 30 chr3 116975318 116975588 -101061570 + AluY SINE Alu 1 262 -49 1425 200 75 33 chr3 116975588 116976097 -101061061 + L1MC/D LINE L1 5021 5563 -743 456 333 33 25 chr3 116976113 116976356 -101060802 + L1PA14 LINE L1 1667 1911 -5670 * 11398 177 13 7 chr3 116976353 116977910 -101059248 + L1PA14 LINE L1 4295 5841 -1758 1957 121 124 3 chr3 116977910 116978233 -101058925 + THE1B LTR MaLR 1 362 -2 11398 177 13 7 chr3 116978233 116979903 -101057255 + L1PA14 LINE L1 5841 7534 -65 1884 111 4 0 chr3 116981707 116981959 -101055199 + AluSx SINE Alu 1 253 -59 806 67 30 0 chr3 116981966 116982101 -101055057 + (TAGA)n Simple_repeat Simple_repeat 2 140 0 25 0 0 0 chr3 116987497 116987522 -101049636 + AT_rich Low_complexity Low_complexity 1 25 0 285 149 21 0 chr3 116989365 116989412 -101047746 + L1PA14 LINE L1 7543 7590 -9 30 69 0 0 chr3 116990470 116990528 -101046630 + AT_rich Low_complexity Low_complexity 1 58 0 707 251 163 17 chr3 116990659 116991069 -101046089 + HAL1 LINE L1 992 1461 -1046 284 351 15 0 chr3 116991300 116991434 -101045724 + LTR16C LTR ERVL 354 489 -2 339 234 117 23 chr3 116991526 116991654 -101045504 + MLT1-int LTR MaLR 33 145 -1226 718 235 56 0 chr3 116991692 116991854 -101045304 - MLT1A2 LTR MaLR -16 374 204 398 237 41 131 chr3 116991951 116992196 -101044962 + MER41B LTR ERV1 54 430 -205 854 192 70 79 chr3 116992332 116992546 -101044612 - MLT1A2 LTR MaLR -178 212 1 839 183 21 112 chr3 116993145 116993299 -101043859 - MER20 DNA MER1_type 0 219 93 2261 109 0 10 chr3 116993299 116993611 -101043547 - AluSx SINE Alu -3 309 1 839 183 21 112 chr3 116993611 116993697 -101043461 - MER20 DNA MER1_type -126 93 1 319 292 100 8 chr3 116993886 116994016 -101043142 + MLT1F1 LTR MaLR 35 176 -379 3262 222 101 83 chr3 116994016 116995190 -101041968 + MER52A LTR ERV1 1 1196 -559 345 190 0 25 chr3 116995176 116995255 -101041903 + MER52A LTR ERV1 1679 1755 0 * 430 266 98 33 chr3 116995258 116995570 -101041588 + MLT1F1 LTR MaLR 140 558 -9 2056 116 76 20 chr3 116995865 116996220 -101040938 - THE1C LTR MaLR 0 375 1 740 298 39 33 chr3 116996443 116996775 -101040383 + LTR16C LTR ERVL 158 491 0 1380 234 95 46 chr3 116997325 116997510 -101039648 - L1ME1 LINE L1 -22 6144 5969 2018 110 3 79 chr3 116997510 116997838 -101039320 - AluSx SINE Alu -9 303 1 1380 234 95 46 chr3 116997838 116998524 -101038634 - L1ME1 LINE L1 -197 5969 5198 972 199 38 142 chr3 116998836 116999182 -101037976 + MER52A LTR ERV1 1040 1349 -406 290 252 0 45 chr3 116999172 116999283 -101037875 + LTR28 LTR ERV1 586 691 -329 * 458 142 24 126 chr3 116999293 116999332 -101037826 + MER52A LTR ERV1 1216 1257 -498 243 0 0 0 chr3 116999332 116999359 -101037799 + (G)n Simple_repeat Simple_repeat 1 27 0 458 142 24 126 chr3 116999359 116999446 -101037712 + MER52A LTR ERV1 1257 1329 -426 2844 203 39 0 chr3 116999448 117000035 -101037123 - MLT-int LTR MaLR -942 793 184 534 204 5 20 chr3 117000035 117000152 -101037006 - MSTC LTR MaLR -246 119 1 21 36 0 0 chr3 117001771 117001799 -101035359 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr3 117003261 117003292 -101033866 + AT_rich Low_complexity Low_complexity 1 31 0 283 317 42 7 chr3 117003772 117003914 -101033244 + L1ME LINE L1 29 175 -5944 325 130 19 0 chr3 117004160 117004214 -101032944 - MLT1A1 LTR MaLR 0 365 311 1139 240 11 0 chr3 117004215 117004482 -101032676 - L1ME1 LINE L1 -1342 4804 4535 284 317 12 18 chr3 117004582 117004749 -101032409 + L1P LINE L1 3607 3772 -2374 1754 259 119 8 chr3 117004768 117005390 -101031768 - L1ME1 LINE L1 -1617 4529 3839 2369 162 18 27 chr3 117005392 117005881 -101031277 + L1MC1 LINE L1 5841 6325 -8 444 276 138 78 chr3 117005886 117005992 -101031166 + L1ME LINE L1 3078 3176 -2953 2337 112 0 0 chr3 117005992 117006304 -101030854 + AluSx SINE Alu 1 312 0 444 276 138 78 chr3 117006304 117006660 -101030498 + L1ME LINE L1 3176 3568 -2561 251 299 23 42 chr3 117006851 117007068 -101030090 + L1P LINE L1 3560 3772 -2374 * 633 284 106 21 chr3 117007066 117007785 -101029373 + L1ME LINE L1 3795 4574 -1555 319 275 25 29 chr3 117007961 117008193 -101028965 + L1ME LINE L1 5244 5475 -676 2756 60 126 0 chr3 117008656 117009054 -101028104 - LTR7 LTR ERV1 -2 448 1 2249 98 70 14 chr3 117009054 117009423 -101027735 - HERVH LTR ERV1 0 7713 7324 1366 134 19 0 chr3 117009423 117009639 -101027519 - HERVH LTR ERV1 -1894 5819 5600 4321 138 5 1 chr3 117009640 117010300 -101026858 - HERVH LTR ERV1 -2564 5149 4488 3399 109 0 6 chr3 117010302 117010807 -101026351 - HERVH LTR ERV1 -3720 3993 3492 913 140 7 0 chr3 117010797 117010947 -101026211 - HERVH LTR ERV1 -4423 3290 3140 * 19912 93 26 19 chr3 117010944 117013905 -101023253 - HERVH LTR ERV1 -4729 2984 1 2620 67 149 0 chr3 117013907 117014297 -101022861 - LTR7 LTR ERV1 -2 448 1 445 272 157 35 chr3 117014897 117015235 -101021923 - L2 LINE L2 -1314 2000 1622 194 378 70 33 chr3 117015232 117015661 -101021497 + L2 LINE L2 2313 2757 -557 * 1988 191 47 89 chr3 117015902 117016474 -101020684 + MLT1E2 LTR MaLR 1 548 -78 1514 171 16 9 chr3 117016802 117017094 -101020064 - MER61B LTR ERV1 -37 388 1 21 36 0 0 chr3 117017944 117017972 -101019186 + AT_rich Low_complexity Low_complexity 1 28 0 208 143 0 0 chr3 117018282 117018317 -101018841 + (A)n Simple_repeat Simple_repeat 1 35 0 529 359 32 9 chr3 117018499 117018719 -101018439 - MIR SINE MIR -18 244 20 1517 134 11 18 chr3 117018742 117018893 -101018265 - L1MA4 LINE L1 -7 6293 6143 4638 146 27 22 chr3 117018893 117019672 -101017486 - LTR39 LTR ERV1 0 783 1 1517 134 11 18 chr3 117019672 117019797 -101017361 - L1MA4 LINE L1 -157 6143 6019 1498 120 13 8 chr3 117019798 117020032 -101017126 + L1MA4 LINE L1 5743 5977 -323 234 91 0 0 chr3 117020686 117020719 -101016439 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1860 202 102 28 chr3 117020933 117021403 -101015755 - MLT1D LTR MaLR 0 505 1 254 229 38 153 chr3 117021703 117021784 -101015374 + MIR SINE MIR 38 88 -174 2268 56 3 20 chr3 117021784 117022132 -101015026 + L1PA6 LINE L1 5856 6154 0 254 229 38 153 chr3 117022132 117022233 -101014925 + MIR SINE MIR 88 199 -63 2217 75 29 26 chr3 117022240 117022547 -101014611 + AluSc SINE Alu 1 308 -1 32 26 0 0 chr3 117023258 117023297 -101013861 + AT_rich Low_complexity Low_complexity 1 39 0 1837 164 10 0 chr3 117024527 117024826 -101012332 - AluJb SINE Alu -10 302 1 254 316 99 20 chr3 117024829 117024981 -101012177 - L2 LINE L2 -49 3264 3101 286 378 80 0 chr3 117025153 117025378 -101011780 - L2 LINE L2 -402 2912 2670 309 326 31 16 chr3 117025578 117025707 -101011451 + L2 LINE L2 3182 3312 -1 336 48 0 0 chr3 117026336 117026378 -101010780 + (CA)n Simple_repeat Simple_repeat 2 43 0 354 360 35 0 chr3 117026525 117026697 -101010461 + HAL1 LINE L1 1585 1762 -745 2344 95 3 0 chr3 117026927 117027231 -101009927 - AluSp SINE Alu -8 305 1 399 316 135 29 chr3 117027607 117027938 -101009220 + L1M4 LINE L1 2302 2707 -3439 231 36 0 0 chr3 117027938 117027966 -101009192 + (CA)n Simple_repeat Simple_repeat 1 28 0 399 316 135 29 chr3 117027966 117028146 -101009012 + L1M4 LINE L1 2707 2867 -3279 22 0 0 0 chr3 117028577 117028599 -101008559 + AT_rich Low_complexity Low_complexity 1 22 0 282 227 13 27 chr3 117028686 117028761 -101008397 + GA-rich Low_complexity Low_complexity 2 75 0 430 247 265 33 chr3 117028761 117029106 -101008052 - L2 LINE L2 -187 3126 2702 3995 191 37 73 chr3 117029113 117030674 -101006484 - L1MD1 LINE L1 -3 6633 5131 15646 26 2 0 chr3 117030691 117033319 -101003839 + L1PA3 LINE L1 3534 6166 0 2193 235 30 13 chr3 117033338 117033973 -101003185 - L1MD1 LINE L1 -1430 5110 4465 481 219 58 7 chr3 117033970 117034125 -101003033 + L1M4 LINE L1 3907 4069 -2077 * 8722 201 77 68 chr3 117034114 117035080 -101002078 - L1MD1 LINE L1 -3631 2909 1953 180 0 0 0 chr3 117035080 117035100 -101002058 + (C)n Simple_repeat Simple_repeat 1 20 0 8722 201 77 68 chr3 117035100 117036733 -101000425 - L1MD1 LINE L1 -4587 1953 269 246 105 0 0 chr3 117036733 117036771 -101000387 + (TTTTG)n Simple_repeat Simple_repeat 4 41 0 8722 201 77 68 chr3 117036771 117037043 -101000115 - L1MD1 LINE L1 -6271 269 1 595 285 179 13 chr3 117037223 117037525 -100999633 - L2 LINE L2 -776 2538 2187 7399 27 8 2 chr3 117039099 117040140 -100997018 + L1PA4 LINE L1 5106 6151 -4 379 238 12 0 chr3 117040246 117040330 -100996828 + MLT1G1 LTR MaLR 1 85 -510 624 297 153 68 chr3 117040347 117041246 -100995912 - L1M4 LINE L1 -1018 5128 4073 2176 106 106 0 chr3 117041246 117041575 -100995583 - THE1B LTR MaLR 0 364 1 624 297 153 68 chr3 117041575 117042025 -100995133 - L1M4 LINE L1 -2073 4073 3663 32 67 0 0 chr3 117042328 117042388 -100994770 + AT_rich Low_complexity Low_complexity 1 60 0 700 328 92 59 chr3 117042406 117043012 -100994146 - HAL1 LINE L1 -752 1755 1108 4678 168 35 6 chr3 117043012 117043852 -100993306 - MER6 DNA MER2_type 0 865 2 700 328 92 59 chr3 117043852 117044154 -100993004 - HAL1 LINE L1 -1399 1108 817 22 0 0 0 chr3 117044661 117044683 -100992475 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr3 117044914 117044943 -100992215 + AT_rich Low_complexity Low_complexity 1 29 0 186 309 73 52 chr3 117045064 117045200 -100991958 - MER5B DNA MER1_type -7 171 33 254 328 86 31 chr3 117045437 117045565 -100991593 - L3b LINE CR1 -93 1490 1356 2111 272 58 22 chr3 117046556 117047479 -100989679 - L1ME3A LINE L1 -21 6149 5195 1724 189 7 0 chr3 117047649 117047946 -100989212 - AluJb SINE Alu -5 307 9 382 254 103 6 chr3 117048030 117048195 -100988963 - L1ME3A LINE L1 -1843 4303 4123 305 284 37 67 chr3 117048261 117048395 -100988763 - L1ME3A LINE L1 -2178 3968 3839 896 191 6 0 chr3 117048409 117048587 -100988571 - L1MB7 LINE L1 -9 6175 5997 707 216 33 114 chr3 117049114 117049309 -100987849 - MIR SINE MIR 0 262 94 2271 113 3 0 chr3 117049309 117049620 -100987538 - AluSx SINE Alu 0 312 1 707 216 33 114 chr3 117049620 117049697 -100987461 - MIR SINE MIR -168 94 12 2307 93 7 0 chr3 117052172 117052472 -100984686 + AluSp SINE Alu 1 302 -11 750 304 19 27 chr3 117053193 117053453 -100983705 + MIR SINE MIR 5 262 0 180 331 69 23 chr3 117053498 117053628 -100983530 + L2 LINE L2 3173 3308 -5 191 283 0 0 chr3 117054799 117054852 -100982306 + L2 LINE L2 3020 3072 -241 525 297 40 0 chr3 117054992 117055140 -100982018 + MIR SINE MIR 2 155 -107 1831 153 54 17 chr3 117055197 117055550 -100981608 + MER47A DNA MER2_type 1 366 0 43007 32 21 1 chr3 117056105 117062136 -100975022 + L1PA2 LINE L1 1 6152 -3 231 159 167 24 chr3 117062168 117062294 -100974864 + L1M2 LINE L1 2674 2817 -4032 350 206 41 0 chr3 117062314 117062387 -100974771 + L1MA6 LINE L1 2236 2311 -4538 11974 170 50 22 chr3 117062420 117064645 -100972513 + L1MA6 LINE L1 2793 4954 -2048 2374 79 3 0 chr3 117064645 117064950 -100972208 + AluY SINE Alu 1 306 -5 11974 170 50 22 chr3 117064950 117065857 -100971301 + L1MA6 LINE L1 4954 5834 -1168 363 23 0 0 chr3 117065857 117065901 -100971257 + (CA)n Simple_repeat Simple_repeat 2 45 0 11974 170 50 22 chr3 117065901 117066875 -100970283 + L1MA6 LINE L1 5834 6984 -18 414 0 0 0 chr3 117067361 117067407 -100969751 + (TTA)n Simple_repeat Simple_repeat 2 47 0 2018 120 3 0 chr3 117067411 117067695 -100969463 - AluSq SINE Alu -28 285 1 206 316 63 0 chr3 117068059 117068138 -100969020 - L3b LINE CR1 -392 1191 1108 5380 78 97 1 chr3 117069056 117069810 -100967348 + LTR12 LTR ERV1 1 826 0 262 281 13 98 chr3 117070126 117070279 -100966879 + MIR SINE MIR 117 256 -6 259 267 172 0 chr3 117071021 117071137 -100966021 - MIR SINE MIR -83 179 44 2059 115 4 0 chr3 117071398 117071712 -100965446 - AluSx SINE Alu 0 317 3 221 308 165 0 chr3 117072015 117072106 -100965052 + L2 LINE L2 3156 3261 -11 2584 102 16 8 chr3 117072206 117072578 -100964580 - THE1C LTR MaLR 0 375 1 198 311 93 0 chr3 117072852 117073013 -100964145 - L2 LINE L2 -1261 2053 1878 209 200 233 17 chr3 117073127 117073187 -100963971 - L2 LINE L2 0 3272 3200 201 318 30 0 chr3 117073239 117073305 -100963853 - MER5A DNA MER1_type -6 183 116 244 253 88 11 chr3 117073502 117073593 -100963565 + L1ME2 LINE L1 90 187 -6018 330 255 9 38 chr3 117074314 117074420 -100962738 + L1ME2 LINE L1 2157 2259 -4137 492 239 100 29 chr3 117074519 117074758 -100962400 + L1ME2 LINE L1 2325 2580 -3635 513 309 55 62 chr3 117074944 117075362 -100961796 + HERV16 LTR ERVL 4558 4972 -24 314 87 0 0 chr3 117075362 117075408 -100961750 - MADE1 DNA Mariner 0 80 35 * 729 240 87 10 chr3 117075406 117075614 -100961544 + MLT1A1 LTR MaLR 142 365 0 2152 118 24 47 chr3 117075762 117076144 -100961014 + THE1C LTR MaLR 1 373 -2 416 219 35 41 chr3 117076176 117076325 -100960833 + L1ME2 LINE L1 4500 4649 -1566 1577 181 3 27 chr3 117076325 117076623 -100960535 - AluJo SINE Alu -21 291 1 416 219 35 41 chr3 117076623 117076642 -100960516 + L1ME2 LINE L1 4649 4667 -1548 22 88 0 0 chr3 117076847 117076904 -100960254 + AT_rich Low_complexity Low_complexity 1 57 0 563 306 46 19 chr3 117077162 117077378 -100959780 + MER31-int LTR ERV1 3839 4060 -876 1606 181 60 28 chr3 117077389 117077742 -100959416 - MLT1A1 LTR MaLR 0 365 2 533 204 39 0 chr3 117077969 117078072 -100959086 + U6 snRNA snRNA 1 107 0 473 130 10 80 chr3 117078073 117078112 -100959046 + L1MA5 LINE L1 2565 2605 -4244 2028 73 56 36 chr3 117078112 117078414 -100958744 + AluY SINE Alu 1 308 -3 473 130 10 80 chr3 117078414 117078474 -100958684 + L1MA5 LINE L1 2605 2657 -4192 13547 184 47 10 chr3 117078533 117081475 -100955683 + L1MA5 LINE L1 3068 6131 -743 460 212 10 20 chr3 117081468 117081567 -100955591 - L1MA5 LINE L1 -351 5949 5852 * 4604 156 19 14 chr3 117081567 117082422 -100954736 + L1MA5 LINE L1 6144 7002 0 1305 234 78 7 chr3 117082768 117083075 -100954083 - MER2 DNA MER2_type 0 345 17 2180 72 0 79 chr3 117083123 117083441 -100953717 + AluSg SINE Alu 1 293 -17 2311 230 66 42 chr3 117083505 117083763 -100953395 + L1ME2 LINE L1 5260 5510 -723 2352 86 3 0 chr3 117083763 117084066 -100953092 + AluY SINE Alu 1 304 -7 2311 230 66 42 chr3 117084066 117084702 -100952456 + L1ME2 LINE L1 5510 6176 -57 1684 256 113 43 chr3 117084702 117085689 -100951469 - L1M4 LINE L1 -1351 4795 3739 * 8068 215 44 25 chr3 117085687 117085749 -100951409 - L1MB1 LINE L1 -2 6166 6107 2093 129 3 3 chr3 117085749 117086058 -100951100 - AluSx SINE Alu -3 309 1 8068 215 44 25 chr3 117086058 117086805 -100950353 - L1MB1 LINE L1 -61 6107 5376 342 45 0 0 chr3 117086805 117086849 -100950309 + (TG)n Simple_repeat Simple_repeat 2 45 0 8068 215 44 25 chr3 117086849 117088901 -100948257 - L1MB1 LINE L1 -792 5376 3268 844 237 57 0 chr3 117089013 117089207 -100947951 + MLT1A1 LTR MaLR 161 365 0 1755 206 47 8 chr3 117089207 117089590 -100947568 + MLT1A1-int LTR MaLR 1 398 -1337 183 330 144 0 chr3 117090147 117090244 -100946914 - L2 LINE L2 -3 3269 3159 201 286 48 16 chr3 117091127 117091190 -100945968 - MIR SINE MIR -116 146 82 480 318 30 60 chr3 117091511 117091778 -100945380 + MIR SINE MIR 3 261 -1 239 301 12 0 chr3 117093498 117093581 -100943577 + T-rich Low_complexity Low_complexity 4 87 0 249 265 60 12 chr3 117093592 117093675 -100943483 - L1MC/D LINE L1 -2103 5705 5619 529 285 20 45 chr3 117094987 117095187 -100941971 - MER58A DNA MER1_type -3 221 27 212 383 2 5 chr3 117095256 117095348 -100941810 - MIR SINE MIR -63 145 55 405 133 0 0 chr3 117096537 117096612 -100940546 + (TC)n Simple_repeat Simple_repeat 2 76 0 216 135 0 0 chr3 117096866 117096903 -100940255 + (CA)n Simple_repeat Simple_repeat 1 37 0 1280 326 69 35 chr3 117096944 117097648 -100939510 + L1M2a LINE L1 401 1409 -6157 5014 237 25 16 chr3 117097830 117099270 -100937888 + L1M2a LINE L1 2097 3395 -4171 3755 28 0 59 chr3 117099366 117099861 -100937297 + L1PA3 LINE L1 5432 5897 -258 904 283 29 11 chr3 117199861 117200137 -100837021 + L1MEc LINE L1 136 416 -5980 * 1287 233 54 64 chr3 117200136 117200255 -100836903 + L1MEc LINE L1 647 766 -5630 2142 52 34 0 chr3 117200255 117200523 -100836635 + AluY SINE Alu 23 299 -12 1287 233 54 64 chr3 117200523 117200979 -100836179 + L1MEc LINE L1 766 1216 -5180 212 216 20 0 chr3 117201079 117201130 -100836028 + (TA)n Simple_repeat Simple_repeat 2 53 0 1935 163 203 29 chr3 117202015 117202538 -100834620 + LTR18B LTR ERVL 1 614 0 279 0 0 0 chr3 117202646 117202677 -100834481 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 1315 213 30 43 chr3 117203469 117203590 -100833568 + AluJb SINE Alu 1 122 -180 2035 101 11 0 chr3 117203590 117203906 -100833252 - AluY SINE Alu 0 319 1 1315 213 30 43 chr3 117203906 117204088 -100833070 + AluJb SINE Alu 122 301 -1 240 228 18 0 chr3 117204088 117204145 -100833013 + GA-rich Low_complexity Low_complexity 1 58 0 4612 182 25 15 chr3 117204301 117205721 -100831437 - L1PA16 LINE L1 -16 6150 4724 1148 226 0 0 chr3 117205720 117205955 -100831203 + L1P LINE L1 3776 4010 -2136 * 23 0 0 0 chr3 117207258 117207281 -100829877 + AT_rich Low_complexity Low_complexity 1 23 0 2318 92 0 3 chr3 117207539 117207832 -100829326 - AluY SINE Alu -19 292 1 2130 109 7 3 chr3 117208046 117208354 -100828804 + AluSx SINE Alu 1 309 0 1926 133 174 11 chr3 117208433 117208801 -100828357 + MSTA LTR MaLR 1 428 0 497 287 107 45 chr3 117208906 117209262 -100827896 + MLT1I LTR MaLR 17 448 -2 27 81 0 0 chr3 117210249 117210311 -100826847 + AT_rich Low_complexity Low_complexity 1 62 0 309 304 177 6 chr3 117211025 117211183 -100825975 - MIR SINE MIR 0 262 78 180 111 0 0 chr3 117212307 117212334 -100824824 + (CA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr3 117212416 117212438 -100824720 + AT_rich Low_complexity Low_complexity 1 22 0 1860 143 12 40 chr3 117213489 117213810 -100823348 - AluSx SINE Alu 0 312 1 766 286 213 22 chr3 117214988 117215359 -100821799 + MLT1H LTR MaLR 108 549 0 260 302 12 12 chr3 117215360 117215446 -100821712 - MIR SINE MIR -105 157 72 42 0 0 0 chr3 117215462 117215504 -100821654 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr3 117216340 117216370 -100820788 + AT_rich Low_complexity Low_complexity 1 30 0 300 172 0 0 chr3 117216527 117216585 -100820573 + (CA)n Simple_repeat Simple_repeat 1 58 0 25 65 0 0 chr3 117218618 117218664 -100818494 + AT_rich Low_complexity Low_complexity 1 46 0 200 257 29 86 chr3 117218694 117218834 -100818324 + MIR SINE MIR 74 205 -57 21 0 0 0 chr3 117219400 117219421 -100817737 + AT_rich Low_complexity Low_complexity 1 21 0 669 347 113 39 chr3 117219986 117220415 -100816743 + L2 LINE L2 1990 2386 -886 2125 109 0 7 chr3 117220415 117220708 -100816450 + AluSg SINE Alu 1 291 -19 284 0 28 0 chr3 117220714 117220750 -100816408 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 669 347 113 39 chr3 117220750 117221513 -100815645 + L2 LINE L2 2390 3267 -5 1474 225 53 26 chr3 117221861 117222315 -100814843 - MLT1C LTR MaLR 0 467 2 21 57 0 0 chr3 117222509 117222544 -100814614 + AT_rich Low_complexity Low_complexity 1 35 0 1940 150 36 6 chr3 117222949 117223308 -100813850 - L1PB2 LINE L1 0 6151 5782 577 159 0 0 chr3 117223323 117223411 -100813747 + LOR1a LTR ERV1 304 391 -106 2495 94 22 0 chr3 117223447 117223809 -100813349 - L1PB2 LINE L1 -359 5792 5423 4504 262 45 35 chr3 117224213 117224256 -100812902 - L1 LINE L1 -3342 3446 3405 2326 81 0 3 chr3 117224256 117224554 -100812604 - AluY SINE Alu -14 297 1 4504 262 45 35 chr3 117224554 117228080 -100809078 - L1 LINE L1 -3383 3405 79 222 37 0 0 chr3 117228839 117228866 -100808292 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 268 320 25 25 chr3 117229650 117229772 -100807386 + MER103 DNA DNA 44 165 -1 249 327 48 55 chr3 117229849 117230014 -100807144 - MLT1J2 LTR MaLR -5 445 282 218 239 42 0 chr3 117230248 117230319 -100806839 + (CATATA)n Simple_repeat Simple_repeat 6 79 0 2899 209 6 5 chr3 117230664 117231311 -100805847 + L1 LINE L1 4074 4721 -1425 5115 229 31 7 chr3 117231315 117231696 -100805462 + L1MA6 LINE L1 2900 3270 -2876 2081 86 4 4 chr3 117231696 117231965 -100805193 + AluSq SINE Alu 6 274 -39 5115 229 31 7 chr3 117231965 117232880 -100804278 + L1MA6 LINE L1 3270 4227 -1919 1511 143 8 4 chr3 117232865 117233130 -100804028 + L1MA6 LINE L1 4631 4896 -1250 * 3696 175 47 34 chr3 117233124 117233931 -100803227 + L1MA6 LINE L1 5478 6295 -5 273 231 231 0 chr3 117233973 117234103 -100803055 + L1M4 LINE L1 2333 2492 -3654 2077 247 126 41 chr3 117234112 117235275 -100801883 + L1M4 LINE L1 2838 4099 -2047 595 243 97 15 chr3 117235354 117235622 -100801536 + L1M4 LINE L1 4255 4544 -1602 936 331 156 19 chr3 117235683 117236375 -100800783 - L2 LINE L2 -5 3308 2525 1648 146 90 39 chr3 117236375 117236732 -100800426 + THE1C LTR MaLR 1 375 0 936 331 156 19 chr3 117236732 117236786 -100800372 - L2 LINE L2 -788 2525 2480 2027 130 7 0 chr3 117237322 117237623 -100799535 + AluSg1 SINE Alu 1 303 -6 1309 252 9 104 chr3 117237712 117238132 -100799026 + L2 LINE L2 1996 2358 -956 3229 144 2 4 chr3 117238132 117238619 -100798539 - MER66B LTR ERV1 0 486 1 1309 252 9 104 chr3 117238619 117238725 -100798433 + L2 LINE L2 2358 2472 -842 815 148 0 0 chr3 117238926 117239054 -100798104 + AluSg/x SINE Alu 173 300 -9 339 322 5 109 chr3 117240910 117241112 -100796046 + MER5A DNA MER1_type 7 187 -2 2157 93 14 3 chr3 117241386 117241676 -100795482 - AluSq SINE Alu -20 293 1 193 310 40 70 chr3 117242598 117242698 -100794460 - L2 LINE L2 0 3272 3176 202 318 0 0 chr3 117243220 117243283 -100793875 + (TA)n Simple_repeat Simple_repeat 1 63 0 1641 213 69 32 chr3 117243740 117244205 -100792953 - Charlie4a DNA MER1_type -3 505 24 1789 119 51 21 chr3 117244266 117244601 -100792557 + L1MA7 LINE L1 5932 6276 -15 427 188 24 0 chr3 117244804 117244889 -100792269 - LOR1a LTR ERV1 -378 119 33 285 156 0 0 chr3 117244924 117244969 -100792189 - LOR1a LTR ERV1 -452 45 1 461 228 11 0 chr3 117245126 117245218 -100791940 - Tigger5 DNA MER2_type 0 2323 2231 249 229 57 14 chr3 117245267 117245337 -100791821 - Tigger5 DNA MER2_type 0 2323 2251 336 316 68 32 chr3 117245381 117245571 -100791587 - MIR SINE MIR -48 214 18 465 316 35 39 chr3 117245964 117246246 -100790912 - Charlie8 DNA MER1_type -2142 275 6 276 30 0 0 chr3 117246880 117246913 -100790245 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 567 240 113 93 chr3 117247522 117247876 -100789282 - MER57A LTR ERV1 -1 402 42 2947 76 13 27 chr3 117248137 117248623 -100788535 + MLT2A1 LTR ERVL 2 453 0 471 115 0 13 chr3 117249304 117249382 -100787776 - MSTB2 LTR MaLR 0 457 381 329 221 10 0 chr3 117249556 117249660 -100787498 + CT-rich Low_complexity Low_complexity 1 105 0 212 355 81 0 chr3 117249675 117249799 -100787359 - L2 LINE L2 -20 3293 3160 315 274 0 0 chr3 117250095 117250179 -100786979 + L2 LINE L2 795 878 -2436 201 318 7 80 chr3 117250431 117250510 -100786648 + MIR SINE MIR 123 187 -75 2227 227 49 4 chr3 117250510 117251044 -100786114 + MER68 LTR ERV1 1 558 -4 201 318 7 80 chr3 117251044 117251115 -100786043 + MIR SINE MIR 187 262 0 880 367 133 6 chr3 117251145 117251831 -100785327 + L2 LINE L2 2196 2968 -346 25 65 0 0 chr3 117251968 117252014 -100785144 + AT_rich Low_complexity Low_complexity 1 46 0 1755 232 45 32 chr3 117252423 117252978 -100784180 - L1M4 LINE L1 -820 5326 4765 437 90 0 0 chr3 117253003 117253070 -100784088 + L1MA7 LINE L1 6225 6291 0 692 296 7 11 chr3 117253076 117253350 -100783808 - L1MCa LINE L1 -2582 3844 3572 663 167 0 0 chr3 117253363 117253471 -100783687 - AluJb SINE Alu -204 108 1 2008 215 34 2 chr3 117253491 117253997 -100783161 - L1MCa LINE L1 -2921 3505 2984 * 7130 188 49 1 chr3 117253993 117255388 -100781770 - L1MCa LINE L1 -4932 1494 34 867 294 58 3 chr3 117255698 117256011 -100781147 - MER46C DNA MER2_type -2 336 7 305 324 115 45 chr3 117256428 117256672 -100780486 + MIR SINE MIR 2 262 0 228 224 17 0 chr3 117256932 117256990 -100780168 - MLT1H LTR MaLR -3 546 488 24 0 0 0 chr3 117257133 117257157 -100780001 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr3 117257775 117257798 -100779360 + AT_rich Low_complexity Low_complexity 1 23 0 276 170 0 0 chr3 117257809 117257862 -100779296 + CT-rich Low_complexity Low_complexity 3 55 0 181 98 49 0 chr3 117257861 117257902 -100779256 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 * 22 70 0 0 chr3 117258040 117258083 -100779075 + AT_rich Low_complexity Low_complexity 1 43 0 195 42 0 0 chr3 117258083 117258107 -100779051 + (GA)n Simple_repeat Simple_repeat 2 25 0 458 252 20 40 chr3 117258192 117258343 -100778815 - MLT2D LTR ERVL -164 250 103 32 26 0 0 chr3 117258343 117258382 -100778776 + AT_rich Low_complexity Low_complexity 1 39 0 525 227 8 0 chr3 117258386 117258505 -100778653 - MLT2B2 LTR ERVL -393 122 3 2112 96 14 10 chr3 117258544 117258861 -100778297 - AluSp SINE Alu 0 313 1 274 344 76 0 chr3 117258897 117259028 -100778130 + MIR SINE MIR 5 145 -117 27 0 0 0 chr3 117259120 117259147 -100778011 + AT_rich Low_complexity Low_complexity 1 27 0 23 33 0 0 chr3 117259173 117259203 -100777955 + AT_rich Low_complexity Low_complexity 1 30 0 462 242 78 70 chr3 117259497 117259753 -100777405 - LTR41 LTR ERVL -6 767 510 285 51 0 0 chr3 117260136 117260175 -100776983 + (TC)n Simple_repeat Simple_repeat 2 40 0 582 279 27 6 chr3 117260185 117260368 -100776790 - LTR41 LTR ERVL -586 187 1 26 74 0 0 chr3 117261495 117261549 -100775609 + AT_rich Low_complexity Low_complexity 1 54 0 299 320 70 36 chr3 117261984 117262602 -100774556 - L1M4 LINE L1 -1637 4509 3871 757 228 33 47 chr3 117262927 117263142 -100774016 + MER58A DNA MER1_type 2 213 -11 2429 78 0 0 chr3 117263413 117263720 -100773438 + AluY SINE Alu 2 308 -3 2211 255 65 17 chr3 117265524 117266384 -100770774 - L1MEc LINE L1 -4109 2287 1387 226 344 39 26 chr3 117266699 117266853 -100770305 + MIR3 SINE MIR 38 193 -15 27 29 0 0 chr3 117267020 117267054 -100770104 + AT_rich Low_complexity Low_complexity 1 34 0 28 0 0 0 chr3 117267077 117267105 -100770053 + AT_rich Low_complexity Low_complexity 1 28 0 240 271 197 0 chr3 117267187 117267309 -100769849 - Charlie7 DNA MER1_type -853 1759 1614 2150 70 3 18 chr3 117267376 117267581 -100769577 - AluY SINE Alu 0 308 107 5862 64 13 14 chr3 117267581 117268362 -100768796 + LTR17 LTR ERV1 1 780 0 2150 70 3 18 chr3 117268362 117268468 -100768690 - AluY SINE Alu -201 107 1 308 244 33 0 chr3 117268482 117268572 -100768586 - Charlie7 DNA MER1_type -1079 1533 1441 382 233 98 43 chr3 117268631 117268794 -100768364 - Charlie7 DNA MER1_type -2433 179 8 200 280 0 2 chr3 117269977 117270034 -100767124 + MIR SINE MIR 98 148 -60 28 0 0 0 chr3 117270223 117270251 -100766907 + AT_rich Low_complexity Low_complexity 1 28 0 205 290 72 0 chr3 117270347 117270416 -100766742 - MIR SINE MIR -21 241 168 270 0 0 0 chr3 117270496 117270526 -100766632 + (CA)n Simple_repeat Simple_repeat 2 31 0 3945 140 8 2 chr3 117270856 117271498 -100765660 - L1PA16 LINE L1 -267 5899 5254 1097 251 36 0 chr3 117271512 117271759 -100765399 + L1PA16 LINE L1 5902 6157 -9 391 362 29 68 chr3 117273136 117273476 -100763682 - L2 LINE L2 0 3272 2946 6627 258 27 47 chr3 117273599 117276689 -100760469 + L1M2a LINE L1 4 3007 -4161 1159 182 5 5 chr3 117276723 117276932 -100760226 - AluY SINE Alu 0 311 103 12256 235 40 22 chr3 117277050 117277376 -100759782 + L1MA9 LINE L1 2786 3105 -4626 2526 71 3 3 chr3 117277376 117277687 -100759471 - AluY SINE Alu 0 311 1 12256 235 40 22 chr3 117277687 117282068 -100755090 + L1MA9 LINE L1 3105 7408 -323 1910 152 7 0 chr3 117282068 117282357 -100754801 + AluSx SINE Alu 1 291 -21 213 39 0 0 chr3 117282357 117282383 -100754775 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 12256 235 40 22 chr3 117282383 117282481 -100754677 + L1MA9 LINE L1 7407 7685 -46 208 191 0 79 chr3 117282525 117282588 -100754570 - L2 LINE L2 -564 2750 2693 582 301 75 19 chr3 117283251 117283517 -100753641 - L2 LINE L2 -1 3312 3032 2186 129 0 0 chr3 117283535 117283830 -100753328 - AluSq SINE Alu -16 297 3 481 363 49 29 chr3 117284004 117284290 -100752868 - L2 LINE L2 -285 3028 2740 814 161 7 15 chr3 117284363 117284500 -100752658 + AluJ SINE Alu 1 136 -176 936 169 51 11 chr3 117284532 117284710 -100752448 + AluJ SINE Alu 120 304 -8 811 273 98 88 chr3 117284741 117285488 -100751670 - L2 LINE L2 -665 2649 1896 2154 165 67 15 chr3 117285856 117286261 -100750897 - MSTB LTR MaLR 0 426 1 315 0 0 0 chr3 117286482 117286517 -100750641 + (CA)n Simple_repeat Simple_repeat 2 36 0 27 49 0 0 chr3 117287164 117287205 -100749953 + AT_rich Low_complexity Low_complexity 1 41 0 17024 174 55 7 chr3 117287499 117293464 -100743694 + L1MA2 LINE L1 13 6495 -1228 2270 84 0 0 chr3 117293464 117293779 -100743379 + AluY SINE Alu 1 315 0 17024 174 55 7 chr3 117293779 117294812 -100742346 + L1MA2 LINE L1 6495 7476 -247 296 102 51 51 chr3 117294806 117294849 -100742309 - L1MA2 LINE L1 -416 5888 5846 * 1919 144 16 43 chr3 117294849 117295085 -100742073 + L1MA3 LINE L1 5941 6182 -123 306 0 0 0 chr3 117295085 117295119 -100742039 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1265 311 7 91 chr3 117295121 117295430 -100741728 - AluSq SINE Alu -30 283 1 1919 144 16 43 chr3 117295430 117295565 -100741593 + L1MA3 LINE L1 6183 6305 0 296 102 51 51 chr3 117295565 117295580 -100741578 - L1MA2 LINE L1 -457 5847 5830 225 299 38 32 chr3 117295576 117295733 -100741425 + L1M4 LINE L1 1448 1605 -4937 * 2336 86 7 0 chr3 117295911 117296215 -100740943 + AluY SINE Alu 1 306 -5 1093 264 44 58 chr3 117296305 117296828 -100740330 - MLT1F1 LTR MaLR 0 567 96 1583 189 108 17 chr3 117297004 117297364 -100739794 + MSTD LTR MaLR 2 394 -2 408 294 65 46 chr3 117297471 117297789 -100739369 - MLT1H1 LTR MaLR -297 258 7 1860 264 74 19 chr3 117298167 117298697 -100738461 - MLT1F1 LTR MaLR -8 559 1 527 228 53 37 chr3 117298924 117299113 -100738045 - MLT1H1 LTR MaLR -1 589 398 622 307 52 22 chr3 117299279 117299542 -100737616 - MLT1H1 LTR MaLR -287 268 3 1666 78 5 0 chr3 117300463 117300668 -100736490 + AluSp SINE Alu 1 206 -107 225 94 0 0 chr3 117300681 117300713 -100736445 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 187 378 49 12 chr3 117300828 117300962 -100736196 + L2 LINE L2 3140 3283 -30 1761 154 21 0 chr3 117300962 117301248 -100735910 - AluJo SINE Alu -16 296 5 187 378 49 12 chr3 117301248 117301277 -100735881 + L2 LINE L2 3283 3309 -4 254 239 155 0 chr3 117301670 117301741 -100735417 + L2 LINE L2 1895 1976 -1338 1311 308 32 10 chr3 117301744 117302150 -100735008 + LTR16A LTR ERVL 1 415 -35 34 42 0 0 chr3 117302339 117302387 -100734771 + AT_rich Low_complexity Low_complexity 1 48 0 2160 202 34 87 chr3 117302502 117303086 -100734072 + MLT2B3 LTR ERVL 2 554 0 345 275 64 9 chr3 117303590 117303699 -100733459 + MIR SINE MIR 21 135 -127 22 0 0 0 chr3 117303782 117303804 -100733354 + AT_rich Low_complexity Low_complexity 1 22 0 312 269 23 31 chr3 117303807 117303937 -100733221 - LTR67 LTR ERVL 0 557 429 1914 164 3 3 chr3 117304819 117305117 -100732041 - AluJb SINE Alu -12 300 3 206 164 45 15 chr3 117305277 117305344 -100731814 + (TA)n Simple_repeat Simple_repeat 2 70 0 403 272 126 95 chr3 117305770 117306064 -100731094 + LTR16C LTR ERVL 1 303 -188 2720 99 0 0 chr3 117306885 117307249 -100729909 - THE1B LTR MaLR 0 364 1 26 0 0 0 chr3 117307537 117307563 -100729595 + AT_rich Low_complexity Low_complexity 1 26 0 316 207 45 36 chr3 117307607 117307718 -100729440 - L1MC5 LINE L1 -241 7720 7609 320 333 80 27 chr3 117308235 117308385 -100728773 - MIR SINE MIR -27 235 78 1253 258 90 82 chr3 117308715 117308929 -100728229 - MLT2E LTR ERVL -2 626 415 597 192 81 6 chr3 117308929 117309101 -100728057 + MER53 DNA DNA 2 186 -3 1253 258 90 82 chr3 117309101 117309484 -100727674 - MLT2E LTR ERVL -213 415 24 221 250 0 0 chr3 117309525 117309573 -100727585 + CT-rich Low_complexity Low_complexity 2 49 0 1287 238 52 6 chr3 117309575 117309940 -100727218 - L1ME2 LINE L1 -11 6153 5772 2066 134 0 3 chr3 117310437 117310735 -100726423 + AluSx SINE Alu 1 297 -15 39 38 0 0 chr3 117310973 117311026 -100726132 + AT_rich Low_complexity Low_complexity 1 53 0 215 188 0 42 chr3 117312088 117312136 -100725022 + L2 LINE L2 3189 3234 -38 536 281 113 72 chr3 117312966 117313301 -100723857 - MLT1K LTR MaLR -41 547 199 223 317 42 108 chr3 117313371 117313491 -100723667 + L2 LINE L2 3158 3269 -3 1455 38 71 22 chr3 117313550 117313734 -100723424 - AluY SINE Alu -118 193 1 438 256 48 0 chr3 117313973 117314098 -100723060 - MIR SINE MIR -42 220 90 2120 132 0 7 chr3 117314421 117314731 -100722427 - AluSx SINE Alu -4 308 1 310 282 94 28 chr3 117315679 117315860 -100721298 + MIR SINE MIR 11 203 -59 2205 112 0 0 chr3 117316092 117316386 -100720772 + AluSc SINE Alu 1 294 -15 270 337 0 11 chr3 117317334 117317426 -100719732 - MIR SINE MIR -117 145 55 723 298 78 4 chr3 117317454 117317696 -100719462 + MIR SINE MIR 1 260 -2 299 228 26 9 chr3 117319482 117319596 -100717562 + CT-rich Low_complexity Low_complexity 1 116 0 696 209 10 23 chr3 117319617 117320241 -100716917 + CT-rich Low_complexity Low_complexity 1 615 0 21 0 0 0 chr3 117320378 117320399 -100716759 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 117321557 117321579 -100715579 + AT_rich Low_complexity Low_complexity 1 22 0 183 80 0 0 chr3 117322383 117322408 -100714750 + (TGGGGG)n Simple_repeat Simple_repeat 5 29 0 402 21 0 0 chr3 117322495 117322542 -100714616 + (TG)n Simple_repeat Simple_repeat 2 48 0 196 276 17 0 chr3 117322633 117322691 -100714467 - MIR SINE MIR -46 216 158 253 217 24 72 chr3 117323054 117323137 -100714021 - L2 LINE L2 0 3272 3194 246 288 117 31 chr3 117323172 117323335 -100713823 - LTR33 LTR ERVL -11 510 334 282 283 118 26 chr3 117323443 117323595 -100713563 - LTR33 LTR ERVL -353 168 3 1416 96 35 0 chr3 117323741 117323970 -100713188 + L1MA8 LINE L1 6055 6291 0 2795 174 116 34 chr3 117324545 117325202 -100711956 - LTR8A LTR ERV1 -16 711 1 800 278 0 0 chr3 117325209 117325389 -100711769 - HUERS-P1 LTR ERV1 -7 6256 6077 8709 158 81 80 chr3 117325529 117328962 -100708196 - LTR8-int LTR ERV1 -80 6251 1843 253 116 23 0 chr3 117329019 117329062 -100708096 - MER34C LTR ERV1 -373 212 169 949 266 24 8 chr3 117329062 117329323 -100707835 - LTR8-int LTR ERV1 -3723 2608 2332 243 146 0 0 chr3 117329343 117329398 -100707760 + (T)n Simple_repeat Simple_repeat 1 55 0 6333 201 29 35 chr3 117329661 117331572 -100705586 - LTR8-int LTR ERV1 -3439 2507 557 642 236 44 104 chr3 117331583 117331926 -100705232 - LTR8-int LTR ERV1 -5867 396 1 532 161 0 0 chr3 117331928 117332009 -100705149 - LTR8 LTR ERV1 -3 688 608 406 193 182 83 chr3 117332343 117332524 -100704634 - L1ME2 LINE L1 -1 6163 5965 234 200 18 0 chr3 117332569 117332624 -100704534 - L1ME2 LINE L1 -197 5967 5912 29399 120 13 14 chr3 117332631 117338843 -100698315 - L1PA8 LINE L1 0 6487 105 2885 170 80 9 chr3 117338938 117339514 -100697644 - LTR8A LTR ERV1 -110 617 1 28 0 0 0 chr3 117340338 117340366 -100696792 + AT_rich Low_complexity Low_complexity 1 28 0 5189 119 14 0 chr3 117340477 117341216 -100695942 - THE1B-int LTR MaLR -831 749 1 2011 116 78 32 chr3 117341218 117341564 -100695594 - THE1B LTR MaLR -2 362 1 3985 196 62 4 chr3 117341564 117341956 -100695202 - L1 LINE L1 -1475 4671 4303 737 43 0 0 chr3 117341956 117342046 -100695112 + L1PA2 LINE L1 6062 6155 0 3985 196 62 4 chr3 117342046 117342563 -100694595 - L1 LINE L1 -1843 4303 3710 1297 210 34 9 chr3 117342567 117342888 -100694270 + L1M2 LINE L1 1573 2139 -4402 5480 76 8 15 chr3 117343822 117344570 -100692588 - L1PA8A LINE L1 0 6446 5704 22520 151 31 16 chr3 117344670 117349887 -100687271 - L1PA8A LINE L1 -1096 5365 3 31 76 0 0 chr3 117349961 117350027 -100687131 + AT_rich Low_complexity Low_complexity 1 66 0 331 299 22 29 chr3 117351684 117351821 -100685337 + L2 LINE L2 3178 3313 0 23 33 0 0 chr3 117353052 117353082 -100684076 + AT_rich Low_complexity Low_complexity 1 30 0 15915 151 128 7 chr3 117353528 117356396 -100680762 - L1PA12 LINE L1 -4360 3224 4 2778 137 19 70 chr3 117356395 117356481 -100680677 - L1MA8 LINE L1 -318 5833 5744 * 514 134 113 0 chr3 117356481 117356578 -100680580 - HY1 scRNA scRNA -4 108 1 2778 137 19 70 chr3 117356578 117357061 -100680097 - L1MA8 LINE L1 -407 5744 5292 661 288 24 20 chr3 117357170 117357420 -100679738 - MIR SINE MIR -3 259 9 637 246 134 6 chr3 117358239 117358418 -100678740 + MER58C DNA MER1_type 1 202 -13 1924 113 4 0 chr3 117358488 117358745 -100678413 - AluSg SINE Alu -52 258 1 810 279 90 63 chr3 117359088 117359611 -100677547 + MLT1F LTR MaLR 1 537 -5 858 227 88 49 chr3 117359617 117359925 -100677233 - L1MC4 LINE L1 -1110 6932 6613 644 129 9 43 chr3 117359925 117360252 -100676906 + (TA)n Simple_repeat Simple_repeat 1 315 0 643 115 28 35 chr3 117360268 117360819 -100676339 + (TA)n Simple_repeat Simple_repeat 1 546 0 306 202 71 24 chr3 117360853 117360937 -100676221 - L1MC4 LINE L1 -1340 6702 6615 594 133 0 48 chr3 117360939 117361127 -100676031 + (TA)n Simple_repeat Simple_repeat 2 180 0 566 110 63 15 chr3 117361141 117361465 -100675693 + (TA)n Simple_repeat Simple_repeat 1 339 0 282 291 0 48 chr3 117361474 117361600 -100675558 - L1MC4 LINE L1 -1190 6618 6501 195 186 0 0 chr3 117361781 117361824 -100675334 + GA-rich Low_complexity Low_complexity 2 44 0 180 77 0 0 chr3 117361826 117361852 -100675306 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 895 211 0 22 chr3 117361871 117362051 -100675107 - AluJo SINE Alu -52 260 85 540 246 0 0 chr3 117362051 117362165 -100674993 - FRAM SINE Alu -62 114 1 250 256 111 15 chr3 117363627 117363826 -100673332 + L1MEc LINE L1 2146 2363 -4033 1171 97 20 31 chr3 117363958 117364153 -100673005 + HSMAR2 DNA Mariner 8 200 -1102 1395 94 0 102 chr3 117364154 117364290 -100672868 - L1P4 LINE L1 -570 5595 5495 1594 158 10 62 chr3 117364290 117364594 -100672564 + AluJo SINE Alu 1 288 -24 1395 94 0 102 chr3 117364594 117364713 -100672445 - L1PA15 LINE L1 -670 5495 5366 4246 138 20 0 chr3 117364713 117365352 -100671806 + L1PA15 LINE L1 5497 6160 -5 3816 156 11 3 chr3 117365352 117365986 -100671172 + HSMAR2 DNA Mariner 199 837 -465 185 0 40 0 chr3 117366006 117366031 -100671127 + (CA)n Simple_repeat Simple_repeat 2 27 0 2392 142 18 8 chr3 117366038 117366439 -100670719 + HSMAR2 DNA Mariner 898 1302 0 1169 278 64 79 chr3 117366440 117367707 -100669451 + L1MEc LINE L1 2464 3711 -2504 431 302 86 3 chr3 117367714 117368052 -100669106 + L1MEc LINE L1 4312 4677 -1538 849 278 84 28 chr3 117368190 117369240 -100667918 + L1MCa LINE L1 929 2270 -4337 2058 123 3 10 chr3 117369365 117369658 -100667500 + AluSg SINE Alu 1 291 -19 231 36 0 0 chr3 117369999 117370027 -100667131 + (TA)n Simple_repeat Simple_repeat 2 29 0 2585 36 3 0 chr3 117370032 117370333 -100666825 - AluY SINE Alu -9 302 1 207 167 0 0 chr3 117370969 117371011 -100666147 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 25 0 0 0 chr3 117371213 117371238 -100665920 + AT_rich Low_complexity Low_complexity 1 25 0 367 318 91 19 chr3 117372250 117372404 -100664754 + MIR SINE MIR 6 170 -92 280 310 9 44 chr3 117372500 117372613 -100664545 + LTR67 LTR ERVL 31 139 -418 295 247 0 41 chr3 117372994 117373091 -100664067 + L1MC5 LINE L1 7832 7924 -37 192 411 70 13 chr3 117374205 117374363 -100662795 + L2 LINE L2 2510 2676 -638 304 253 192 0 chr3 117374377 117374476 -100662682 + HsTC2 DNA Tc2 7 124 -1774 983 220 45 111 chr3 117374510 117374855 -100662303 + HsTC2 DNA Tc2 1280 1657 -241 1695 146 17 21 chr3 117374855 117375143 -100662015 + AluJo SINE Alu 17 303 -9 983 220 45 111 chr3 117375143 117375303 -100661855 + HsTC2 DNA Tc2 1657 1826 -72 463 262 47 0 chr3 117375457 117375606 -100661552 - LTR16A1 LTR ERVL -4 453 298 1284 280 90 37 chr3 117375655 117376277 -100660881 + MLT2F LTR ERVL 1 655 -8 453 279 79 64 chr3 117376290 117376555 -100660603 - LTR16A1 LTR ERVL -187 270 2 511 268 85 12 chr3 117377768 117377932 -100659226 - MLT1J2 LTR MaLR -14 436 261 1256 190 93 60 chr3 117378065 117378418 -100658740 + MLT1A1 LTR MaLR 1 365 0 550 286 60 6 chr3 117378467 117378635 -100658523 + MIR SINE MIR 22 198 -64 693 269 119 36 chr3 117379412 117379824 -100657334 - MLT1J1 LTR MaLR 0 446 1 2284 36 0 4 chr3 117380188 117380469 -100656689 + L1PA5 LINE L1 5868 6147 -7 22 0 0 0 chr3 117380469 117380491 -100656667 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr3 117381937 117381967 -100655191 + AT_rich Low_complexity Low_complexity 1 30 0 314 192 0 27 chr3 117484955 117485028 -100552130 - MLT1A1 LTR MaLR -293 72 2 1330 142 54 29 chr3 117486147 117486463 -100550695 - MER33 DNA MER1_type 0 324 1 315 0 0 0 chr3 117486944 117486979 -100550179 + (TG)n Simple_repeat Simple_repeat 1 35 0 2685 176 50 6 chr3 117486986 117487481 -100549677 + MLT2B1 LTR ERVL 4 520 0 381 43 0 0 chr3 117487484 117487531 -100549627 + (TG)n Simple_repeat Simple_repeat 2 48 0 27 62 0 0 chr3 117487871 117487919 -100549239 + AT_rich Low_complexity Low_complexity 1 48 0 306 87 0 0 chr3 117487919 117487965 -100549193 + (TG)n Simple_repeat Simple_repeat 1 46 0 779 104 0 0 chr3 117489694 117489800 -100547358 - MSTA LTR MaLR 0 428 323 338 321 37 58 chr3 117489904 117490147 -100547011 - HAL1b LINE L1 -943 405 168 2261 100 3 3 chr3 117491632 117491943 -100545215 - AluSx SINE Alu -1 311 1 204 308 143 22 chr3 117492023 117492114 -100545044 - MIR SINE MIR -131 131 30 342 45 0 0 chr3 117492340 117492384 -100544774 + (A)n Simple_repeat Simple_repeat 1 44 0 31 26 0 0 chr3 117492402 117492440 -100544718 + AT_rich Low_complexity Low_complexity 1 38 0 302 313 97 28 chr3 117493514 117493690 -100543468 - MIR SINE MIR -2 260 73 378 299 32 32 chr3 117494339 117494496 -100542662 + MIR3 SINE MIR 48 204 -4 366 280 6 54 chr3 117494676 117494844 -100542314 + GA-rich Low_complexity Low_complexity 1 160 0 208 260 0 40 chr3 117494967 117495017 -100542141 + MIR SINE MIR 21 68 -194 680 136 10 0 chr3 117495039 117495142 -100542016 - MLT1A1 LTR MaLR 0 365 262 5791 166 13 2 chr3 117495242 117496614 -100540544 + L1PB1 LINE L1 4409 5804 -347 257 51 26 0 chr3 117496614 117496653 -100540505 + (TA)n Simple_repeat Simple_repeat 2 41 0 5791 166 13 2 chr3 117496653 117497004 -100540154 + L1PB1 LINE L1 5804 6150 -1 4155 145 7 17 chr3 117497365 117498062 -100539096 + L1PA16 LINE L1 5476 6165 -1 2201 106 7 0 chr3 117498089 117498391 -100538767 + AluSp SINE Alu 1 304 -9 390 182 0 0 chr3 117498593 117498659 -100538499 + MLT1A1 LTR MaLR 300 365 0 189 0 0 0 chr3 117498885 117498906 -100538252 + (A)n Simple_repeat Simple_repeat 1 21 0 30 0 0 0 chr3 117499046 117499076 -100538082 + AT_rich Low_complexity Low_complexity 1 30 0 659 177 52 68 chr3 117500100 117500292 -100536866 + MER53 DNA DNA 1 189 0 631 153 28 21 chr3 117500336 117500480 -100536678 + MER53 DNA DNA 42 186 -3 537 307 40 7 chr3 117501601 117501751 -100535407 - MIR SINE MIR -82 180 26 428 145 0 0 chr3 117501752 117501821 -100535337 - Alu SINE Alu -8 304 236 981 303 181 47 chr3 117503014 117503978 -100533180 + L2 LINE L2 1785 2877 -437 211 338 81 0 chr3 117504263 117504337 -100532821 + L2 LINE L2 3137 3216 -56 240 167 0 0 chr3 117504426 117504474 -100532684 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 285 241 0 38 chr3 117504805 117504884 -100532274 + L1ME LINE L1 5726 5801 -320 188 284 135 0 chr3 117505272 117505346 -100531812 + MIR3 SINE MIR 111 194 -14 209 264 0 0 chr3 117505508 117505561 -100531597 + MIR3 SINE MIR 150 202 -6 197 345 36 0 chr3 117505583 117505667 -100531491 - MIR3 SINE MIR -7 201 115 334 256 24 24 chr3 117506432 117506514 -100530644 + MIR SINE MIR 32 113 -95 23 0 0 0 chr3 117507504 117507527 -100529631 + AT_rich Low_complexity Low_complexity 1 23 0 393 338 59 0 chr3 117509251 117509387 -100527771 - MIR SINE MIR 0 262 119 1977 174 40 74 chr3 117509737 117509918 -100527240 + L1MDa LINE L1 1574 1760 -4780 3978 164 11 32 chr3 117509918 117510718 -100526440 + LTR1 LTR ERV1 3 785 0 1780 138 0 0 chr3 117510718 117510999 -100526159 + AluSx SINE Alu 31 311 0 1977 174 40 74 chr3 117510999 117511371 -100525787 + L1MDa LINE L1 1758 2110 -4430 402 85 0 0 chr3 117511512 117511571 -100525587 + (CA)n Simple_repeat Simple_repeat 2 60 0 894 279 104 48 chr3 117511625 117511980 -100525178 - LTR16A1 LTR ERVL -79 378 4 504 350 15 0 chr3 117512575 117512775 -100524383 - L1MC/D LINE L1 -1992 5816 5614 357 339 86 16 chr3 117512788 117513117 -100524041 - MLT1I LTR MaLR -3 406 27 344 342 90 34 chr3 117513143 117513377 -100523781 - L1MC/D LINE L1 -2191 5617 5371 258 333 44 56 chr3 117513423 117513693 -100523465 - L3 LINE CR1 -545 1032 766 252 362 0 0 chr3 117513808 117513902 -100523256 - L3 LINE CR1 -823 754 661 21 36 0 0 chr3 117514765 117514793 -100522365 + GC_rich Low_complexity Low_complexity 1 28 0 5442 142 9 48 chr3 117514844 117516119 -100521039 + SVA Other Other 393 1386 0 2139 116 0 3 chr3 117516140 117516443 -100520715 + AluSx SINE Alu 1 302 -10 200 292 0 0 chr3 117517162 117517227 -100519931 + A-rich Low_complexity Low_complexity 1 65 0 297 0 0 0 chr3 117517238 117517271 -100519887 + (TG)n Simple_repeat Simple_repeat 2 34 0 240 59 29 0 chr3 117517367 117517401 -100519757 + MSTA LTR MaLR 1 35 -393 326 299 95 27 chr3 117518009 117518156 -100519002 + L1ME4a LINE L1 5962 6118 -3 29 90 0 0 chr3 117518269 117518347 -100518811 + AT_rich Low_complexity Low_complexity 1 78 0 309 243 69 21 chr3 117518397 117518541 -100518617 - HAL1 LINE L1 -100 2407 2257 2027 240 69 30 chr3 117518888 117519454 -100517704 - MLT1E LTR MaLR -4 589 2 298 263 30 10 chr3 117519615 117519714 -100517444 - HAL1 LINE L1 -568 1939 1839 889 266 9 118 chr3 117519794 117520233 -100516925 - L2 LINE L2 -5 3308 2918 226 261 75 80 chr3 117520451 117520677 -100516481 + HAL1b LINE L1 663 887 -461 301 316 36 43 chr3 117520764 117520903 -100516255 + HAL1b LINE L1 794 931 -417 244 289 0 52 chr3 117521507 117521604 -100515554 - MLT1K LTR MaLR 0 588 497 22 56 0 0 chr3 117522218 117522254 -100514904 + AT_rich Low_complexity Low_complexity 1 36 0 228 336 52 0 chr3 117524855 117524971 -100512187 - L2 LINE L2 0 3313 3192 371 251 166 11 chr3 117525267 117525442 -100511716 + L1ME LINE L1 5535 5736 -385 852 197 6 17 chr3 117525603 117525781 -100511377 + MLT1A1 LTR MaLR 1 176 -189 28 29 0 0 chr3 117526295 117526330 -100510828 + AT_rich Low_complexity Low_complexity 1 35 0 233 281 31 21 chr3 117526440 117526536 -100510622 + L1ME LINE L1 5588 5684 -437 405 273 0 53 chr3 117526761 117526893 -100510265 - L2 LINE L2 -18 3295 3171 1266 143 153 20 chr3 117527128 117527415 -100509743 - MER61C LTR ERV1 0 434 139 186 273 104 0 chr3 117527522 117527599 -100509559 - L2 LINE L2 -532 2782 2698 1740 178 0 7 chr3 117527614 117527907 -100509251 - AluSx SINE Alu -21 291 1 570 315 29 12 chr3 117528019 117528260 -100508898 - L2 LINE L2 -687 2627 2383 2264 262 57 77 chr3 117528455 117529501 -100507657 - L2 LINE L2 -466 2848 1824 794 236 136 47 chr3 117529502 117529841 -100507317 + L1MC4 LINE L1 7526 7894 -148 283 301 173 6 chr3 117531200 117531356 -100505802 + MIR SINE MIR 57 238 -24 2794 268 68 2 chr3 117531367 117531942 -100505216 + L1PA13 LINE L1 5551 6163 0 26 64 0 0 chr3 117531966 117532013 -100505145 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr3 117532523 117532545 -100504613 + AT_rich Low_complexity Low_complexity 1 22 0 1088 265 133 40 chr3 117532559 117533651 -100503507 + HAL1 LINE L1 1007 2251 -256 1158 242 121 87 chr3 117533685 117534003 -100503155 - MLT1E1 LTR MaLR -5 649 323 252 0 0 0 chr3 117534003 117534031 -100503127 + (CA)n Simple_repeat Simple_repeat 2 29 0 1158 242 121 87 chr3 117534031 117534297 -100502861 - MLT1E1 LTR MaLR -331 323 67 508 330 38 24 chr3 117534400 117534609 -100502549 + L3 LINE CR1 888 1099 -478 184 98 24 24 chr3 117534782 117534823 -100502335 + (TA)n Simple_repeat Simple_repeat 2 42 0 943 253 38 62 chr3 117534862 117535262 -100501896 + L1MEc LINE L1 37 426 -5970 243 276 179 25 chr3 117535277 117535473 -100501685 + L1M4 LINE L1 3506 3731 -2415 3485 183 42 30 chr3 117535542 117537072 -100500086 - L1PA16 LINE L1 -9 6157 4653 1206 237 58 65 chr3 117537086 117537461 -100499697 + L1M4 LINE L1 3777 4148 -1998 324 0 0 0 chr3 117537461 117537497 -100499661 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1206 237 58 65 chr3 117537497 117537673 -100499485 + L1M4 LINE L1 4148 4324 -1822 1146 206 22 104 chr3 117537712 117537942 -100499216 + L1M4 LINE L1 4521 4705 -1441 581 206 136 13 chr3 117537942 117538097 -100499061 - MER96 DNA MER1_type 0 175 2 1146 206 22 104 chr3 117538097 117538269 -100498889 + L1M4 LINE L1 4705 4890 -1256 26 74 0 0 chr3 117539297 117539351 -100497807 + AT_rich Low_complexity Low_complexity 1 54 0 272 318 127 28 chr3 117540216 117540468 -100496690 - L2 LINE L2 -1107 2207 1931 303 175 0 0 chr3 117540878 117540935 -100496223 + (CA)n Simple_repeat Simple_repeat 1 57 0 327 192 0 64 chr3 117542673 117542729 -100494429 + Tigger2 DNA MER2_type 1 52 -2666 2212 109 0 3 chr3 117542729 117543041 -100494117 - AluSx SINE Alu -1 311 1 327 192 0 64 chr3 117543041 117543062 -100494096 + Tigger2 DNA MER2_type 52 73 -2645 775 256 0 6 chr3 117543095 117543263 -100493895 - MER8 DNA MER2_type -62 177 11 964 323 69 72 chr3 117543477 117544619 -100492539 - L2 LINE L2 -5 3267 2134 3418 99 32 2 chr3 117544639 117545163 -100491995 + L1MA2 LINE L1 5765 6304 0 24 0 0 0 chr3 117545163 117545187 -100491971 + AT_rich Low_complexity Low_complexity 1 24 0 454 43 29 14 chr3 117545221 117545290 -100491868 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 232 190 70 110 chr3 117545292 117545392 -100491766 + L2 LINE L2 2292 2387 -927 214 263 111 10 chr3 117545387 117545486 -100491672 + MIR SINE MIR 125 233 -29 * 1588 179 36 14 chr3 117546031 117546311 -100490847 - AluJo SINE Alu -24 288 3 2166 248 101 71 chr3 117546312 117547448 -100489710 - L1MDa LINE L1 -4959 1581 327 399 151 55 0 chr3 117547446 117547519 -100489639 - L1MDa LINE L1 -6448 92 16 * 185 32 0 65 chr3 117547527 117547558 -100489600 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 351 306 94 72 chr3 117548351 117548531 -100488627 - MIR3 SINE MIR -5 203 20 26 0 0 0 chr3 117549237 117549263 -100487895 + AT_rich Low_complexity Low_complexity 1 26 0 1663 267 69 20 chr3 117549619 117550110 -100487048 + LTR40a LTR ERVL 1 515 -4 1635 93 0 0 chr3 117550407 117550612 -100486546 - AluSx SINE Alu -107 205 1 284 397 32 16 chr3 117551722 117551911 -100485247 - MIR SINE MIR -1 261 70 1999 172 32 36 chr3 117552199 117552748 -100484410 - MLT2A2 LTR ERVL -12 542 1 28 48 0 0 chr3 117553101 117553143 -100484015 + AT_rich Low_complexity Low_complexity 1 42 0 313 339 78 57 chr3 117553420 117554021 -100483137 - L2 LINE L2 -400 2914 2301 645 241 35 41 chr3 117555392 117555562 -100481596 - MER5B DNA MER1_type -8 170 2 271 167 19 0 chr3 117555794 117555848 -100481310 + L1MB8 LINE L1 5552 5606 -568 * 862 177 24 129 chr3 117555835 117556007 -100481151 + L1MB8 LINE L1 5911 6100 -78 1716 187 10 74 chr3 117556007 117556424 -100480734 - MLT1B LTR MaLR 0 390 1 862 177 24 129 chr3 117556424 117556480 -100480678 + L1MB8 LINE L1 6100 6104 -74 1537 70 22 22 chr3 117556480 117556709 -100480449 - L1PA10 LINE L1 0 6168 5940 862 177 24 129 chr3 117556709 117556773 -100480385 + L1MB8 LINE L1 6104 6173 -5 22 56 0 0 chr3 117556775 117556811 -100480347 + AT_rich Low_complexity Low_complexity 1 36 0 19024 131 15 21 chr3 117556862 117560123 -100477035 + L1PA7 LINE L1 593 3833 -2313 8318 106 5 0 chr3 117560223 117562255 -100474903 + L1PA7 LINE L1 4113 6151 -3 612 272 114 24 chr3 117562255 117562553 -100474605 + L1ME1 LINE L1 5322 5646 -520 290 309 7 58 chr3 117562562 117562701 -100474457 + MER77 LTR ERV1 66 197 -408 * 1276 274 45 93 chr3 117562674 117563321 -100473837 + MER21B LTR ERV1 98 713 -150 1154 259 77 10 chr3 117563324 117563726 -100473432 + L1ME1 LINE L1 5646 6074 -92 533 337 78 46 chr3 117563975 117564655 -100472503 - L1M4 LINE L1 -1663 4483 3782 1178 104 49 0 chr3 117564665 117564828 -100472330 + AluSg/x SINE Alu 129 299 -13 300 336 66 8 chr3 117565067 117565189 -100471969 + L3 LINE CR1 1281 1409 -168 756 195 36 1 chr3 117565752 117566031 -100471127 - MER93b LTR ERV1 0 373 53 344 211 0 0 chr3 117566112 117566183 -100470975 + MER92C LTR ERV1 484 554 0 8159 208 7 7 chr3 117566293 117568307 -100468851 - L1 LINE L1 -2289 3857 1852 903 150 6 124 chr3 117568308 117568651 -100468507 + L1MA9 LINE L1 5675 5950 -221 389 280 93 64 chr3 117569139 117569560 -100467598 - L1MC4a LINE L1 -113 6008 5576 2191 125 0 0 chr3 117571026 117571337 -100465821 - AluSx SINE Alu 0 312 2 358 290 58 39 chr3 117571522 117571677 -100465481 + MIR SINE MIR 49 206 -56 1071 259 73 6 chr3 117571911 117572228 -100464930 + MER58B DNA MER1_type 1 338 -3 351 299 24 24 chr3 117572363 117572490 -100464668 + MLT1I LTR MaLR 52 178 -231 396 307 101 18 chr3 117572716 117572934 -100464224 + L3 LINE CR1 462 697 -880 1857 224 36 28 chr3 117573616 117573819 -100463339 + L1MD3 LINE L1 7486 7686 -309 2200 118 0 3 chr3 117573819 117574116 -100463042 + AluSq SINE Alu 1 296 -17 1857 224 36 28 chr3 117574116 117574408 -100462750 + L1MD3 LINE L1 7686 7985 -10 229 230 27 40 chr3 117574464 117574538 -100462620 - MLT1L LTR MaLR -146 469 397 695 281 122 30 chr3 117574572 117574875 -100462283 + LTR33 LTR ERVL 26 356 -165 273 250 157 0 chr3 117575038 117575146 -100462012 - MLT1A1 LTR MaLR -25 349 225 1040 102 30 0 chr3 117575166 117575404 -100461754 + GA-rich Low_complexity Low_complexity 1 245 0 650 152 18 98 chr3 117575413 117575577 -100461581 - MLT1A1 LTR MaLR -214 151 1 925 251 41 67 chr3 117576499 117576841 -100460317 + MER58B DNA MER1_type 9 341 0 323 146 18 0 chr3 117576904 117576959 -100460199 + MER58B DNA MER1_type 286 341 0 252 309 60 0 chr3 117577062 117577146 -100460012 - L2 LINE L2 0 3313 3225 22 35 0 0 chr3 117577396 117577425 -100459733 + AT_rich Low_complexity Low_complexity 1 29 0 1851 129 14 10 chr3 117577791 117578085 -100459073 - AluSx SINE Alu -3 309 15 481 353 38 0 chr3 117578624 117578890 -100458268 + HAL1 LINE L1 10 285 -2222 1239 199 10 74 chr3 117578914 117579210 -100457948 + AluJo SINE Alu 24 300 -12 742 270 55 80 chr3 117579505 117580054 -100457104 + HAL1 LINE L1 588 1122 -1385 11295 161 11 25 chr3 117580067 117583485 -100453673 + L1P3 LINE L1 5 3433 -3028 206 171 0 0 chr3 117585475 117585510 -100451648 + MIR SINE MIR 117 151 -111 184 231 248 41 chr3 117586953 117587074 -100450084 - L3 LINE CR1 -11 1566 1421 808 288 113 3 chr3 117589142 117589434 -100447724 + MER5C DNA MER1_type 1 324 0 1731 166 3 3 chr3 117589844 117590148 -100447010 - AluJo SINE Alu 0 304 1 10270 190 61 5 chr3 117591521 117593499 -100443659 + L1PA13 LINE L1 1 2090 -4697 4607 166 16 7 chr3 117593476 117593678 -100443480 + L1P LINE L1 5137 5336 -1461 * 185 0 40 0 chr3 117593678 117593703 -100443455 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 4607 166 16 7 chr3 117593703 117594397 -100442761 + L1P LINE L1 5336 6041 -756 1816 112 6 112 chr3 117594451 117594800 -100442358 + AluSx SINE Alu 1 312 0 24 0 0 0 chr3 117596287 117596311 -100440847 + AT_rich Low_complexity Low_complexity 1 24 0 185 297 135 27 chr3 117596417 117596528 -100440630 - L2 LINE L2 -2057 1257 1135 376 127 0 0 chr3 117596788 117596843 -100440315 - MER92C LTR ERV1 0 554 500 394 280 13 0 chr3 117596983 117597092 -100440066 - MER92B LTR ERV1 -438 116 1 297 244 2 0 chr3 117597696 117597784 -100439374 - MER31-int LTR ERV1 -468 4468 4399 429 154 0 0 chr3 117597927 117597992 -100439166 + AluJ/FLAM SINE Alu 1 65 -247 22 0 0 0 chr3 117598673 117598695 -100438463 + AT_rich Low_complexity Low_complexity 1 22 0 344 211 0 0 chr3 117598930 117599001 -100438157 - MER92C LTR ERV1 0 554 484 371 338 51 45 chr3 117599597 117599766 -100437392 + L2 LINE L2 2945 3118 -195 2289 165 28 37 chr3 117599766 117600227 -100436931 + MSTB2 LTR MaLR 1 457 0 371 338 51 45 chr3 117600227 117600368 -100436790 + L2 LINE L2 3118 3257 -56 189 107 0 0 chr3 117600381 117600409 -100436749 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 260 321 74 10 chr3 117600416 117600524 -100436634 - MIR3 SINE MIR -91 117 5 22 56 0 0 chr3 117600638 117600674 -100436484 + AT_rich Low_complexity Low_complexity 1 36 0 16808 95 3 9 chr3 117601693 117604955 -100432203 - L1PA7 LINE L1 -3 6151 2905 5849 105 81 112 chr3 117604955 117606545 -100430613 + pTR5 LTR ERV1 744 2438 0 10887 118 1 7 chr3 117606548 117608214 -100428944 - L1PA7 LINE L1 -3237 2909 1254 934 226 55 14 chr3 117608236 117608453 -100428705 - MLT1A1 LTR MaLR -138 227 2 1087 278 112 11 chr3 117608457 117608806 -100428352 + MLT1F LTR MaLR 159 542 0 2291 112 0 6 chr3 117609261 117609575 -100427583 - AluSq SINE Alu -1 312 1 2369 92 0 0 chr3 117610271 117610566 -100426592 + AluSc SINE Alu 3 297 -12 1207 248 98 67 chr3 117611818 117611979 -100425179 - L2 LINE L2 0 3313 3158 317 80 0 20 chr3 117611979 117612029 -100425129 + (CA)n Simple_repeat Simple_repeat 2 50 0 1207 248 98 67 chr3 117612029 117612759 -100424399 - L2 LINE L2 -155 3158 2397 519 95 14 0 chr3 117613020 117613094 -100424064 - MADE1 DNA Mariner -5 75 1 377 296 113 15 chr3 117614065 117614268 -100422890 - MIR SINE MIR -1 261 39 533 249 210 10 chr3 117614846 117615051 -100422107 - MIR SINE MIR 0 262 17 397 339 156 5 chr3 117615134 117615320 -100421838 + MIR SINE MIR 32 245 -17 22 0 0 0 chr3 117616092 117616114 -100421044 + AT_rich Low_complexity Low_complexity 1 22 0 1419 187 78 22 chr3 117616551 117616872 -100420286 + MER44D DNA MER2_type 1 609 0 302 295 54 36 chr3 117617307 117617419 -100419739 + MIR SINE MIR 52 165 -97 223 322 76 25 chr3 117617593 117617711 -100419447 - MIR3 SINE MIR -9 199 76 1031 238 56 16 chr3 117618288 117618611 -100418547 - MER58D DNA MER1_type -4 382 47 624 256 91 84 chr3 117619062 117619600 -100417558 + MER34 LTR ERV1 1 542 0 33 0 0 0 chr3 117620264 117620297 -100416861 + AT_rich Low_complexity Low_complexity 1 33 0 1972 196 8 0 chr3 117620565 117620927 -100416231 - MLT1A1 LTR MaLR 0 365 1 203 214 0 0 chr3 117622085 117622127 -100415031 - L2 LINE L2 0 3313 3272 526 112 11 11 chr3 117824071 117824160 -100212998 - L1P5 LINE L1 -541 5610 5522 26 50 0 0 chr3 117824455 117824495 -100212663 + AT_rich Low_complexity Low_complexity 1 40 0 1369 47 0 0 chr3 117826259 117826429 -100210729 - L1PA4 LINE L1 -3 6152 5983 2689 25 0 3 chr3 117826429 117826743 -100210415 + L1PA4 LINE L1 5662 5974 -181 2146 135 0 0 chr3 117826925 117827237 -100209921 - AluSx SINE Alu 0 312 1 2293 351 60 46 chr3 117827316 117829128 -100208030 - ERVL LTR ERVL -1098 4666 2826 1835 154 55 30 chr3 117829128 117829492 -100207666 + THE1C LTR MaLR 1 373 -2 2293 351 60 46 chr3 117829492 117829542 -100207616 - ERVL LTR ERVL -2938 2826 2778 1308 176 14 95 chr3 117829542 117829661 -100207497 + L1MA8 LINE L1 5827 5954 -337 2098 107 7 3 chr3 117829661 117829951 -100207207 + AluSc SINE Alu 1 291 -18 1308 176 14 95 chr3 117829951 117830200 -100206958 + L1MA8 LINE L1 5954 6165 -126 346 323 39 59 chr3 117830206 117830543 -100206615 - L1MEd LINE L1 -5124 995 666 439 296 32 104 chr3 117830574 117830976 -100206182 - L1MEd LINE L1 -5662 457 85 440 251 55 27 chr3 117831134 117831353 -100205805 - L1MC5 LINE L1 -114 7847 7623 906 234 106 52 chr3 117831434 117831896 -100205262 - L1MC5 LINE L1 -570 7391 6905 1441 113 0 193 chr3 117832068 117832441 -100204717 + AluSx SINE Alu 1 301 -1 257 294 47 65 chr3 117832735 117832949 -100204209 - L1MC5 LINE L1 -1853 5955 5746 203 286 43 29 chr3 117832986 117833056 -100204102 - L3 LINE CR1 -528 1049 979 305 361 110 17 chr3 117833135 117833434 -100203724 - L3 LINE CR1 -727 850 524 27 49 0 0 chr3 117833513 117833554 -100203604 + AT_rich Low_complexity Low_complexity 1 41 0 401 147 2 0 chr3 117834039 117834109 -100203049 - AluJo SINE Alu -4 298 236 701 176 0 78 chr3 117834110 117834263 -100202895 - AluJo SINE Alu -171 141 1 180 229 108 36 chr3 117835424 117835507 -100201651 + MIR SINE MIR 92 180 -82 4188 177 19 43 chr3 117836092 117837346 -100199812 + L1MA9 LINE L1 4904 6245 -67 202 276 13 53 chr3 117837610 117837686 -100199472 + L2 LINE L2 3189 3261 -11 27 0 0 0 chr3 117837757 117837784 -100199374 + AT_rich Low_complexity Low_complexity 1 27 0 230 120 0 40 chr3 117838131 117838181 -100198977 + (TAAAAA)n Simple_repeat Simple_repeat 4 51 0 1443 210 77 39 chr3 117839443 117839861 -100197297 - MER31B LTR ERV1 -4 510 1 233 284 71 98 chr3 117840257 117840413 -100196745 + MER5A DNA MER1_type 1 165 -24 302 299 250 5 chr3 117840597 117840801 -100196357 - MIR SINE MIR -5 257 4 481 292 111 97 chr3 117840872 117841389 -100195769 - L1ME4a LINE L1 -57 6064 5556 1382 223 37 45 chr3 117841389 117841766 -100195392 - MLT1A2 LTR MaLR 0 374 1 481 292 111 97 chr3 117841766 117841904 -100195254 - L1ME4a LINE L1 -565 5556 5396 2230 102 0 3 chr3 117841904 117842199 -100194959 - AluSx SINE Alu -18 294 1 481 292 111 97 chr3 117842199 117842224 -100194934 - L1ME4a LINE L1 -725 5396 5373 447 253 146 6 chr3 117842299 117842457 -100194701 - MIR SINE MIR -11 251 72 202 366 12 12 chr3 117843561 117843643 -100193515 - L2 LINE L2 -8 3305 3224 380 172 0 21 chr3 117844352 117844445 -100192713 + L1PA15 LINE L1 6075 6165 0 314 183 0 12 chr3 117845026 117845108 -100192050 + CT-rich Low_complexity Low_complexity 2 82 0 281 216 43 26 chr3 117845885 117846040 -100191118 + (TTATA)n Simple_repeat Simple_repeat 1 157 0 1898 205 32 9 chr3 117846118 117846552 -100190606 - L1MA9 LINE L1 -38 6274 5831 186 43 0 0 chr3 117846963 117846986 -100190172 + (A)n Simple_repeat Simple_repeat 1 23 0 185 243 0 162 chr3 117847432 117847568 -100189590 - MIR SINE MIR -96 166 53 238 261 0 0 chr3 117847781 117847827 -100189331 + Tigger2 DNA MER2_type 1 46 -2672 2441 170 47 7 chr3 117847827 117848256 -100188902 + Tigger2 DNA MER2_type 2273 2718 0 2665 23 0 0 chr3 117849556 117849866 -100187292 - AluYa5 SINE Alu -1 310 1 237 189 176 0 chr3 117851967 117852041 -100185117 + MLT1J1 LTR MaLR 360 446 0 2149 168 23 28 chr3 117852115 117852543 -100184615 + MSTB LTR MaLR 1 426 0 8685 179 26 3 chr3 117852543 117854090 -100183068 + MSTB-int LTR MaLR 1 1583 -68 1119 65 0 0 chr3 117854091 117854229 -100182929 + AluY SINE Alu 166 303 -8 417 157 0 24 chr3 117854230 117854313 -100182845 + MSTB-int LTR MaLR 1571 1651 0 2071 178 46 12 chr3 117854315 117854725 -100182433 + MSTB LTR MaLR 3 426 0 679 219 0 29 chr3 117854825 117854962 -100182196 - FLAM_C SINE Alu -10 133 1 502 301 35 10 chr3 117854975 117855174 -100181984 - L1ME2 LINE L1 -27 6137 5934 24 85 0 0 chr3 117857235 117857294 -100179864 + AT_rich Low_complexity Low_complexity 1 59 0 266 354 85 32 chr3 117857409 117857821 -100179337 + L2 LINE L2 1076 1509 -1805 300 311 0 0 chr3 117857828 117857902 -100179256 - MER94 DNA DNA -22 112 39 676 326 164 54 chr3 117858097 117859227 -100177931 + L2 LINE L2 1605 2858 -456 335 153 0 12 chr3 117859442 117859527 -100177631 + (TA)n Simple_repeat Simple_repeat 1 84 0 29 28 0 0 chr3 117859980 117860016 -100177142 + AT_rich Low_complexity Low_complexity 1 36 0 2196 191 30 76 chr3 117861283 117861823 -100175335 + MLT2B2 LTR ERVL 1 515 0 4175 220 28 28 chr3 117861898 117863060 -100174098 + L1MA8 LINE L1 4895 6266 -25 22 35 0 0 chr3 117863064 117863093 -100174065 + AT_rich Low_complexity Low_complexity 1 29 0 249 329 0 0 chr3 117863139 117863209 -100173949 + MIR SINE MIR 72 141 -121 4480 27 0 0 chr3 117864042 117864566 -100172592 - L1PA3 LINE L1 -3 6152 5629 560 367 37 54 chr3 117865041 117865632 -100171526 + L3 LINE CR1 899 1479 -98 2884 255 42 44 chr3 117865771 117866553 -100170605 + L1ME1 LINE L1 4394 5176 -1158 1589 180 99 6 chr3 117866553 117866887 -100170271 + MLT1A1 LTR MaLR 1 365 0 2884 255 42 44 chr3 117866887 117867889 -100169269 + L1ME1 LINE L1 5176 6334 0 2966 17 0 20 chr3 117867989 117868345 -100168813 + L1PA2 LINE L1 5802 6150 -5 29 47 0 0 chr3 117868345 117868388 -100168770 + AT_rich Low_complexity Low_complexity 1 43 0 1025 155 0 0 chr3 117868483 117868644 -100168514 + AluSg/x SINE Alu 136 296 -14 369 43 0 0 chr3 117869193 117869240 -100167918 + (TG)n Simple_repeat Simple_repeat 1 47 0 1401 208 14 17 chr3 117870048 117870342 -100166816 - AluJo SINE Alu -9 293 1 433 293 92 50 chr3 117870342 117870742 -100166416 - L1MEd LINE L1 -4911 1208 792 1728 192 55 18 chr3 117871215 117871660 -100165498 - MER31A LTR ERV1 0 661 6 1382 226 133 29 chr3 117871740 117872214 -100164944 - MER66A LTR ERV1 0 478 97 432 0 0 0 chr3 117872275 117872323 -100164835 + (CA)n Simple_repeat Simple_repeat 2 49 0 196 352 65 55 chr3 117872915 117873330 -100163828 + L2 LINE L2 996 1414 -1900 3212 291 81 18 chr3 117873630 117874935 -100162223 - L2 LINE L2 -84 3229 1842 1826 179 23 31 chr3 117874968 117875358 -100161800 - L1MC1 LINE L1 -6 6327 5941 33 25 0 0 chr3 117875371 117875411 -100161747 + AT_rich Low_complexity Low_complexity 1 40 0 545 143 0 9 chr3 117875556 117875661 -100161497 + (TCTG)n Simple_repeat Simple_repeat 3 106 0 547 292 102 14 chr3 117875663 117875879 -100161279 - L2 LINE L2 -1797 1517 1283 23 33 0 0 chr3 117875903 117875933 -100161225 + AT_rich Low_complexity Low_complexity 1 30 0 1659 267 54 30 chr3 117876215 117876885 -100160273 + L1MC4 LINE L1 6411 7124 -918 9808 179 138 14 chr3 117876995 117879344 -100157814 + L1PBa LINE L1 33 2672 -4191 * 10052 212 12 8 chr3 117879341 117881614 -100155544 + L1 LINE L1 2834 5115 -1747 288 0 0 0 chr3 117881614 117881646 -100155512 + (TA)n Simple_repeat Simple_repeat 2 33 0 330 203 0 0 chr3 117881646 117881715 -100155443 + L1 LINE L1 5210 5278 -1584 9677 122 2 34 chr3 117881745 117883233 -100153925 + THE1A-int LTR MaLR 1 1441 -139 2268 134 3 11 chr3 117883432 117883790 -100153368 + THE1A LTR MaLR 1 355 0 23 33 0 0 chr3 117883981 117884011 -100153147 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr3 117884186 117884208 -100152950 + AT_rich Low_complexity Low_complexity 1 22 0 201 378 77 0 chr3 117884589 117884732 -100152426 + MIR SINE MIR 58 211 -51 * 418 328 79 11 chr3 117884727 117884941 -100152217 - MIR SINE MIR -33 229 11 2685 129 30 31 chr3 117885653 117886251 -100150907 + MER4E LTR ERV1 1 766 0 1036 254 125 50 chr3 117886563 117887106 -100150052 - MER34C LTR ERV1 0 585 2 207 139 0 0 chr3 117887511 117887547 -100149611 + (TG)n Simple_repeat Simple_repeat 2 37 0 262 247 165 47 chr3 117887822 117887907 -100149251 + L2 LINE L2 3169 3263 -9 285 274 0 0 chr3 117889414 117889487 -100147671 + GA-rich Low_complexity Low_complexity 2 74 0 2176 114 0 0 chr3 117889658 117889957 -100147201 - AluSg1 SINE Alu -10 299 1 24742 110 19 8 chr3 117890103 117893878 -100143280 - L1P LINE L1 -2319 3827 11 615 254 37 11 chr3 117894187 117894376 -100142782 - L1MC4a LINE L1 -512 7296 7103 544 307 80 24 chr3 117894405 117894617 -100142541 - MIR SINE MIR -21 241 18 1357 233 33 64 chr3 117894654 117895110 -100142048 + L1MD3 LINE L1 7541 7982 -13 24 0 0 0 chr3 117895536 117895560 -100141598 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr3 117896573 117896599 -100140559 + AT_rich Low_complexity Low_complexity 1 26 0 347 252 259 8 chr3 117897529 117897660 -100139498 + MER5A DNA MER1_type 23 186 -3 372 378 88 13 chr3 117898834 117899218 -100137940 - L2 LINE L2 -470 2844 2432 33 43 0 0 chr3 117899268 117899315 -100137843 + AT_rich Low_complexity Low_complexity 1 47 0 9585 85 10 1 chr3 117900696 117902031 -100135127 + L1PA11 LINE L1 1632 2978 -3168 21 0 0 0 chr3 117902154 117902175 -100134983 + GC_rich Low_complexity Low_complexity 1 21 0 5953 102 26 6 chr3 117902511 117903622 -100133536 + L1PA11 LINE L1 5030 6162 -12 243 282 97 51 chr3 117903841 117904036 -100133122 + MIR SINE MIR 53 256 -6 2571 94 11 18 chr3 117904052 117904434 -100132724 + L1PB2 LINE L1 5771 6149 -2 616 270 49 6 chr3 117905443 117905606 -100131552 + MER5B DNA MER1_type 3 172 -6 2383 81 0 0 chr3 117905809 117906117 -100131041 + AluY SINE Alu 4 311 0 23 68 0 0 chr3 117906466 117906510 -100130648 + AT_rich Low_complexity Low_complexity 1 44 0 29 70 0 0 chr3 117906610 117906667 -100130491 + AT_rich Low_complexity Low_complexity 1 57 0 5942 229 65 16 chr3 117906745 117909890 -100127268 + L1M3f LINE L1 4 3293 -3035 611 213 16 91 chr3 117909898 117910012 -100127146 + L1MA4 LINE L1 6067 6153 -147 2516 71 0 0 chr3 117910012 117910320 -100126838 + AluY SINE Alu 4 311 0 611 213 16 91 chr3 117910320 117910458 -100126700 + L1MA4 LINE L1 6153 6300 0 1176 221 120 43 chr3 117910951 117911327 -100125831 + MLT2D LTR ERVL 10 414 0 216 374 12 12 chr3 117911813 117911896 -100125262 - L3 LINE CR1 -11 1566 1484 245 248 158 20 chr3 117911959 117912060 -100125098 - L3 LINE CR1 -217 1360 1246 28 0 0 0 chr3 117912688 117912716 -100124442 + AT_rich Low_complexity Low_complexity 1 28 0 207 327 49 37 chr3 117914038 117914200 -100122958 - L2 LINE L2 -219 3053 2890 207 336 71 14 chr3 117914214 117914354 -100122804 - MIR SINE MIR -6 256 109 1721 258 55 46 chr3 117914490 117915076 -100122082 - MLT1E LTR MaLR 0 593 3 351 394 33 39 chr3 117916319 117916626 -100120532 - L2 LINE L2 -1 3271 2967 925 226 21 47 chr3 117916954 117917189 -100119969 - MLT1D LTR MaLR 0 505 277 212 59 29 0 chr3 117917219 117917253 -100119905 + (CA)n Simple_repeat Simple_repeat 2 36 0 297 186 0 0 chr3 117917253 117917323 -100119835 + (TA)n Simple_repeat Simple_repeat 1 70 0 407 256 67 0 chr3 117917346 117917436 -100119722 - FLAM_A SINE Alu -46 96 1 216 200 0 0 chr3 117917833 117917878 -100119280 + (TAA)n Simple_repeat Simple_repeat 2 46 0 6976 178 22 1 chr3 117917898 117918105 -100119053 - L1PB1 LINE L1 -152 5999 5798 489 59 0 35 chr3 117918105 117918190 -100118968 + (TA)n Simple_repeat Simple_repeat 2 83 0 366 23 0 0 chr3 117918189 117918232 -100118926 + (TG)n Simple_repeat Simple_repeat 2 44 0 * 6976 178 22 1 chr3 117918190 117919579 -100117579 - L1PB1 LINE L1 -353 5798 4377 387 0 0 0 chr3 117919579 117919622 -100117536 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 6976 178 22 1 chr3 117919622 117920314 -100116844 - L1PB1 LINE L1 -1774 4377 3701 1582 76 44 9 chr3 117920314 117920539 -100116619 - MLT2A1 LTR ERVL -210 234 2 2273 92 0 0 chr3 117920852 117921146 -100116012 - AluSg1 SINE Alu -15 294 1 1489 124 4 35 chr3 117921911 117922170 -100114988 + L1MA1 LINE L1 6045 6295 -7 23 33 0 0 chr3 117922174 117922204 -100114954 + AT_rich Low_complexity Low_complexity 1 30 0 1958 109 26 7 chr3 117922432 117922734 -100114424 - L1PA11 LINE L1 0 6174 5867 21 57 0 0 chr3 117923068 117923103 -100114055 + AT_rich Low_complexity Low_complexity 1 35 0 271 256 51 68 chr3 117923384 117923501 -100113657 - MIR SINE MIR -50 212 98 426 275 62 22 chr3 117923622 117923800 -100113358 + MIR SINE MIR 75 259 -3 333 264 38 25 chr3 117924135 117924294 -100112864 + L1MC4a LINE L1 5719 5879 -1929 24 0 0 0 chr3 117925369 117925393 -100111765 + AT_rich Low_complexity Low_complexity 1 24 0 195 152 0 0 chr3 117926234 117926280 -100110878 + (TA)n Simple_repeat Simple_repeat 1 46 0 416 258 125 88 chr3 117926348 117926588 -100110570 - L2 LINE L2 -1699 1615 1367 22 70 0 0 chr3 117927753 117927796 -100109362 + AT_rich Low_complexity Low_complexity 1 43 0 190 365 51 39 chr3 117928888 117929044 -100108114 - MIR SINE MIR -34 228 71 17560 80 4 2 chr3 117929602 117932813 -100104345 - L1PA7 LINE L1 0 6154 2941 6774 68 31 0 chr3 117932950 117935137 -100102021 + L1PA6 LINE L1 3901 6153 -1 2452 80 11 35 chr3 117935385 117935759 -100101399 + L1MA1 LINE L1 5934 6298 -4 1991 112 14 10 chr3 117936505 117936800 -100100358 + AluSx SINE Alu 1 296 -16 313 327 24 36 chr3 117936840 117936873 -100100285 - MIR SINE MIR -18 244 212 2265 92 0 0 chr3 117936873 117937168 -100099990 + AluY SINE Alu 1 295 -16 313 327 24 36 chr3 117937168 117937302 -100099856 - MIR SINE MIR -50 212 79 246 313 12 25 chr3 117937349 117937429 -100099729 - MIR SINE MIR -179 83 5 1064 201 42 19 chr3 117937709 117937972 -100099186 + L1P5 LINE L1 5531 5799 -352 * 12086 157 12 24 chr3 117937955 117940249 -100096909 + L1P LINE L1 2845 5112 -1034 6278 190 52 57 chr3 117940353 117941885 -100095273 - L1PBa LINE L1 -2227 4635 3344 1978 90 10 10 chr3 117941885 117942184 -100094974 - L1PA3 LINE L1 -2 6153 5855 6278 190 52 57 chr3 117942184 117943686 -100093472 - L1PBa LINE L1 -3518 3344 1835 921 149 16 48 chr3 117943679 117943867 -100093291 - L1PBa LINE L1 -6048 815 634 * 537 179 9 0 chr3 117943867 117943973 -100093185 - L1PBa LINE L1 -6663 200 94 2319 77 0 7 chr3 117944188 117944485 -100092673 + AluY SINE Alu 1 295 -16 180 0 0 0 chr3 117944485 117944505 -100092653 + (TA)n Simple_repeat Simple_repeat 2 21 0 2478 79 38 0 chr3 117944995 117945337 -100091821 + THE1A LTR MaLR 1 355 0 625 187 0 8 chr3 117945820 117945943 -100091215 - L1PBa LINE L1 -6739 124 3 291 251 57 114 chr3 117945992 117946203 -100090955 - HAL1 LINE L1 -1554 953 755 258 308 97 40 chr3 117946470 117946717 -100090441 - HAL1 LINE L1 -1986 521 261 436 37 0 0 chr3 117946949 117947003 -100090155 + MADE1 DNA Mariner 1 54 -26 2238 100 0 3 chr3 117948171 117948471 -100088687 + AluSg SINE Alu 1 299 -11 373 332 175 14 chr3 117948776 117948993 -100088165 + MIR SINE MIR 2 253 -9 585 337 146 17 chr3 117950182 117950532 -100086626 - LTR16A LTR ERVL -1 449 55 947 207 19 109 chr3 117950602 117950868 -100086290 - MLT1B LTR MaLR 0 383 133 31 44 0 0 chr3 117950911 117950956 -100086202 + AT_rich Low_complexity Low_complexity 1 45 0 208 408 10 10 chr3 117952380 117952483 -100084675 + L2 LINE L2 3167 3269 -3 2102 120 10 0 chr3 117953472 117953772 -100083386 - AluSx SINE Alu -9 303 1 275 254 42 0 chr3 117954043 117954114 -100083044 + L2 LINE L2 3224 3297 -16 862 281 114 52 chr3 117954965 117955484 -100081674 + MLT1H1 LTR MaLR 3 553 -2 305 171 57 14 chr3 117955786 117955856 -100081302 - MIR SINE MIR -112 150 78 459 325 26 0 chr3 117955915 117956066 -100081092 + L2 LINE L2 3118 3272 0 222 0 79 0 chr3 117956894 117956932 -100080226 + (CAA)n Simple_repeat Simple_repeat 2 42 0 2257 101 0 7 chr3 117957270 117957576 -100079582 + AluSx SINE Alu 1 304 -8 334 194 11 11 chr3 117957576 117957658 -100079500 + GA-rich Low_complexity Low_complexity 10 94 0 515 207 0 8 chr3 117958733 117958854 -100078304 + CT-rich Low_complexity Low_complexity 1 120 0 243 318 6 29 chr3 117958980 117959153 -100078005 + T-rich Low_complexity Low_complexity 2 170 0 951 214 0 6 chr3 117959220 117959398 -100077760 + CT-rich Low_complexity Low_complexity 3 179 0 1982 140 0 0 chr3 117959399 117959678 -100077480 - AluSx SINE Alu -33 279 1 446 158 57 0 chr3 117960382 117960647 -100076511 + (TA)n Simple_repeat Simple_repeat 1 280 0 1459 244 60 17 chr3 117960802 117961335 -100075823 + L1MEc LINE L1 1793 2348 -4048 300 254 0 0 chr3 117961763 117961818 -100075340 + MER2 DNA MER2_type 291 345 0 237 159 0 0 chr3 117961818 117961862 -100075296 + (TG)n Simple_repeat Simple_repeat 1 44 0 25 51 0 0 chr3 117962318 117962357 -100074801 + AT_rich Low_complexity Low_complexity 1 39 0 330 265 24 46 chr3 117962430 117962632 -100074526 - L1ME LINE L1 -461 5660 5467 238 326 101 0 chr3 117962661 117962790 -100074368 - L3 LINE CR1 -118 1459 1318 216 313 150 25 chr3 117963401 117963561 -100073597 + MIR SINE MIR 78 257 -5 211 338 15 0 chr3 117964172 117964240 -100072918 + L2 LINE L2 3245 3313 0 228 252 122 56 chr3 117964465 117964572 -100072586 - L3 LINE CR1 -498 1079 966 3697 184 12 13 chr3 117964627 117965387 -100071771 - L1MA6 LINE L1 0 6300 5542 1318 172 33 0 chr3 117965387 117965741 -100071417 + L1M2 LINE L1 5138 5500 -745 183 371 89 8 chr3 117968130 117968254 -100068904 + L2 LINE L2 3167 3300 -13 1781 213 77 48 chr3 117968331 117969022 -100068136 - Charlie2 DNA MER1_type -2 2860 2150 1115 280 162 50 chr3 117969012 117969742 -100067416 - Charlie2b DNA MER1_type -1515 1267 430 * 282 29 0 0 chr3 117969742 117969777 -100067381 + (TG)n Simple_repeat Simple_repeat 1 35 0 1115 280 162 50 chr3 117969777 117969885 -100067273 - Charlie2b DNA MER1_type -2352 430 335 7302 39 6 3 chr3 117969894 117971491 -100065667 + L1PA4 LINE L1 4557 6155 0 461 241 99 28 chr3 117971840 117971981 -100065177 - Charlie2b DNA MER1_type -2631 151 1 824 285 47 39 chr3 117971982 117972694 -100064464 - L1ME LINE L1 -514 5648 4925 258 32 0 0 chr3 117972764 117972795 -100064363 + (TG)n Simple_repeat Simple_repeat 2 32 0 623 330 116 28 chr3 117972887 117973284 -100063874 + MLT1H1 LTR MaLR 1 432 -123 261 237 48 48 chr3 117973397 117973509 -100063649 + MLT2F LTR ERVL 354 663 0 455 254 35 9 chr3 117973511 117973625 -100063533 + MLT1H1 LTR MaLR 439 555 0 356 247 100 65 chr3 117973665 117973956 -100063202 - L1ME LINE L1 -1460 4686 4386 344 267 38 29 chr3 117974445 117974550 -100062608 + MLT1G1 LTR MaLR 42 147 -448 1883 243 88 11 chr3 117974574 117975294 -100061864 - L1ME2 LINE L1 -260 5904 5129 2247 95 7 0 chr3 117975336 117975631 -100061527 + AluSp SINE Alu 1 297 -16 356 130 14 0 chr3 117976005 117976074 -100061084 + (TG)n Simple_repeat Simple_repeat 1 70 0 1719 198 39 21 chr3 117977118 117977501 -100059657 + MLT1B LTR MaLR 1 390 0 434 198 16 8 chr3 117977872 117977970 -100059188 + MER5A DNA MER1_type 4 103 -86 21 0 0 0 chr3 117979022 117979043 -100058115 + AT_rich Low_complexity Low_complexity 1 21 0 2172 225 7 27 chr3 117979270 117979860 -100057298 + L1MB8 LINE L1 3823 4400 -1746 1374 116 52 12 chr3 117979863 117980113 -100057045 + L1MA4 LINE L1 5881 6140 -160 3546 188 31 48 chr3 117980129 117981003 -100056155 + L1MB8 LINE L1 5315 6173 -5 2282 104 0 0 chr3 117981732 117982039 -100055119 + AluSx SINE Alu 1 307 -5 244 159 16 16 chr3 117982221 117982284 -100054874 + GA-rich Low_complexity Low_complexity 2 64 0 1985 192 41 31 chr3 117983235 117983745 -100053413 - L1MA8 LINE L1 0 6291 5777 243 200 0 20 chr3 117983745 117983795 -100053363 + (CATA)n Simple_repeat Simple_repeat 1 49 0 378 151 19 25 chr3 117983801 117983898 -100053260 - L1MA8 LINE L1 -498 5793 5691 21 57 0 0 chr3 117984042 117984077 -100053081 + AT_rich Low_complexity Low_complexity 1 35 0 619 111 28 9 chr3 117984143 117984251 -100052907 - L1MA5 LINE L1 -4 6296 6187 293 135 0 19 chr3 117984371 117984423 -100052735 + L1MA5 LINE L1 6197 6247 -53 * 3708 159 13 21 chr3 117984417 117985097 -100052061 - L1MA6 LINE L1 -118 6182 5508 560 200 45 0 chr3 117985113 117985223 -100051935 - L1MC3 LINE L1 -503 7282 7168 270 279 70 0 chr3 117985315 117985401 -100051757 + MIR SINE MIR 43 134 -74 2441 99 31 6 chr3 117986814 117987167 -100049991 - THE1B LTR MaLR 0 364 3 23 97 0 0 chr3 117987554 117987626 -100049532 + AT_rich Low_complexity Low_complexity 1 72 0 231 277 108 12 chr3 117987777 117987860 -100049298 + L2 LINE L2 3223 3313 0 254 279 139 51 chr3 117989004 117989085 -100048073 - MIR SINE MIR -14 248 176 2102 104 20 24 chr3 117989085 117989383 -100047775 - AluSx SINE Alu -15 297 1 254 279 139 51 chr3 117989383 117989459 -100047699 - MIR SINE MIR -86 176 77 21 0 0 0 chr3 117989807 117989828 -100047330 + AT_rich Low_complexity Low_complexity 1 21 0 28 61 0 0 chr3 117991297 117991346 -100045812 + AT_rich Low_complexity Low_complexity 1 49 0 191 143 0 54 chr3 117992407 117992463 -100044695 + (T)n Simple_repeat Simple_repeat 1 53 0 1276 161 4 38 chr3 117992565 117992801 -100044357 - MLT1A1 LTR MaLR 0 365 138 797 146 23 0 chr3 117992979 117993109 -100044049 - MLT1A1 LTR MaLR -229 136 4 890 220 22 0 chr3 117993267 117993449 -100043709 + L1PA16 LINE L1 5818 6003 -163 393 195 46 0 chr3 117993448 117993535 -100043623 + L1PA16 LINE L1 5913 6003 -163 * 871 241 21 17 chr3 117993534 117993770 -100043388 + L1PA16 LINE L1 5913 6149 -17 234 333 10 10 chr3 117993781 117993883 -100043275 - L1ME LINE L1 -577 5587 5486 2110 174 51 7 chr3 117994462 117994877 -100042281 + Tigger2a DNA MER2_type 2 434 0 1582 28 0 0 chr3 117994967 117995149 -100042009 + L1P1 LINE L1 4064 4245 -1901 3851 34 0 4 chr3 117995355 117995845 -100041313 - L1PA4 LINE L1 0 6155 5686 2829 19 0 0 chr3 117995845 117996168 -100040990 + L1PA4 LINE L1 5355 5677 -478 205 186 0 0 chr3 117996263 117996306 -100040852 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 204 97 0 0 chr3 117996512 117996543 -100040615 + (TG)n Simple_repeat Simple_repeat 2 32 0 2035 115 3 10 chr3 117998398 117998694 -100038464 + AluSg SINE Alu 1 294 -16 675 301 34 38 chr3 117999082 117999321 -100037837 + MIR SINE MIR 18 255 -7 1854 100 83 17 chr3 117999322 117999612 -100037546 - AluSc SINE Alu 0 309 1 22 56 0 0 chr3 118000241 118000277 -100036881 + AT_rich Low_complexity Low_complexity 1 36 0 594 270 87 36 chr3 118000462 118000658 -100036500 - MIR SINE MIR -15 247 42 272 299 0 0 chr3 118001507 118001574 -100035584 - MIR SINE MIR -136 126 60 3429 184 15 33 chr3 118001961 118002695 -100034463 + L1MB2 LINE L1 5449 6169 -2 303 143 0 20 chr3 118002716 118002765 -100034393 - MER5B DNA MER1_type -129 49 2 347 200 15 0 chr3 118002779 118002844 -100034314 + MER5A DNA MER1_type 1 66 -123 2679 58 0 0 chr3 118003945 118004270 -100032888 - LTR17 LTR ERV1 -454 326 2 1533 87 0 0 chr3 118004271 118004466 -100032692 - HERV17 LTR ERV1 0 8626 8432 21 0 0 0 chr3 118004509 118004530 -100032628 + AT_rich Low_complexity Low_complexity 1 21 0 1049 252 222 23 chr3 118004617 118005184 -100031974 - L1MC4 LINE L1 -138 7904 7225 804 58 0 0 chr3 118005210 118005314 -100031844 - L1MA1 LINE L1 -4 6298 6195 4749 175 29 48 chr3 118005315 118005507 -100031651 - L1M1 LINE L1 -5918 1647 1453 2139 122 0 0 chr3 118005507 118005803 -100031355 + AluSc SINE Alu 1 296 -13 4749 175 29 48 chr3 118005803 118006530 -100030628 - L1M1 LINE L1 -6112 1453 745 628 256 0 0 chr3 118006535 118006672 -100030486 - L1M1 LINE L1 -7031 534 398 3150 231 23 8 chr3 118007093 118007797 -100029361 - L1M1 LINE L1 -6830 735 22 558 265 54 0 chr3 118007807 118008011 -100029147 - L1MC4 LINE L1 -802 7240 7026 2294 264 57 14 chr3 118008069 118008987 -100028171 - L1ME1 LINE L1 -15 6151 5190 82 43 0 0 chr3 118009013 118009130 -100028028 + AT_rich Low_complexity Low_complexity 1 117 0 269 172 40 20 chr3 118009134 118009256 -100027902 + (TTA)n Simple_repeat Simple_repeat 3 103 0 337 170 67 24 chr3 118009167 118009213 -100027945 + (TTATA)n Simple_repeat Simple_repeat 5 48 -128 183 42 0 0 chr3 118009213 118009237 -100027921 + (TATAA)n Simple_repeat Simple_repeat 3 26 0 337 170 67 24 chr3 118009237 118009355 -100027803 + (TTATA)n Simple_repeat Simple_repeat 48 176 0 340 118 71 12 chr3 118009415 118009500 -100027658 - L1ME1 LINE L1 -951 5195 5106 481 331 70 8 chr3 118009744 118009986 -100027172 - L1MEc LINE L1 -6109 287 31 2027 117 23 19 chr3 118011209 118011518 -100025640 + AluSx SINE Alu 1 310 -2 760 184 147 6 chr3 118011606 118011769 -100025389 - MER5A DNA MER1_type -1 188 3 275 284 90 36 chr3 118012931 118013109 -100024049 - MIR3 SINE MIR -3 205 20 327 331 27 27 chr3 118013815 118013963 -100023195 - MIR3 SINE MIR -9 199 52 199 364 64 36 chr3 118014728 118014838 -100022320 + MIR SINE MIR 20 132 -76 204 283 0 0 chr3 118016319 118016365 -100020793 - L2 LINE L2 -4 3268 3223 581 193 27 64 chr3 118017100 118017287 -100019871 + MER46C DNA MER2_type 19 198 -140 2562 50 0 0 chr3 118017335 118017638 -100019520 + AluY SINE Alu 1 303 -8 26 74 0 0 chr3 118017673 118017727 -100019431 + AT_rich Low_complexity Low_complexity 1 54 0 888 283 17 0 chr3 118017774 118018007 -100019151 + MIR SINE MIR 1 237 -25 538 296 78 84 chr3 118018069 118018224 -100018934 + L1ME3A LINE L1 4762 4916 -1230 2096 117 4 0 chr3 118018224 118018560 -100018598 - AluY SINE Alu 0 337 1 538 296 78 84 chr3 118018560 118018900 -100018258 + L1ME3A LINE L1 4916 5255 -891 1013 278 87 34 chr3 118018903 118019555 -100017603 + L1ME3A LINE L1 5259 5945 -225 2634 19 3 0 chr3 118019677 118019985 -100017173 - L1PA2 LINE L1 0 6155 5847 631 0 0 0 chr3 118019985 118020056 -100017102 + L1PA2 LINE L1 5744 5814 -341 5825 122 11 2 chr3 118020247 118021133 -100016025 + L1PB1 LINE L1 5258 6151 0 246 336 62 18 chr3 118021145 118021258 -100015900 - MIR3 SINE MIR -76 132 15 201 233 0 0 chr3 118021690 118021733 -100015425 + CT-rich Low_complexity Low_complexity 2 44 0 1086 176 5 3 chr3 118022105 118022331 -100014827 - AluJb SINE Alu -8 304 2 1853 157 0 0 chr3 118022369 118022656 -100014502 - AluSx SINE Alu -25 287 1 2253 116 0 0 chr3 118025630 118025941 -100011217 - AluSq SINE Alu -2 311 1 1775 170 0 10 chr3 118025945 118026239 -100010919 - AluJb SINE Alu -21 291 1 898 227 34 41 chr3 118026242 118026533 -100010625 - L1ME2 LINE L1 -36 6128 5840 386 202 20 1 chr3 118026543 118026653 -100010505 - AluSp/q SINE Alu -1 302 205 202 287 21 43 chr3 118027282 118027376 -100009782 + MIR SINE MIR 104 195 -67 344 279 121 29 chr3 118027680 118027820 -100009338 + MIR SINE MIR 30 182 -80 1978 135 0 13 chr3 118030964 118031275 -100005883 + AluSq SINE Alu 1 307 -6 1042 116 19 0 chr3 118031278 118031433 -100005725 + AluSg/x SINE Alu 136 293 -19 438 169 0 0 chr3 118031838 118031909 -100005249 + AluS SINE Alu 2 72 -238 321 281 11 37 chr3 118032239 118032532 -100004626 + GA-rich Low_complexity Low_complexity 1 285 0 484 292 25 0 chr3 118032986 118033106 -100004052 - L2 LINE L2 0 3272 3150 673 225 35 18 chr3 118033301 118033470 -100003688 + AluJb SINE Alu 16 187 -125 180 191 118 29 chr3 118034368 118034436 -100002722 + L2 LINE L2 3198 3271 -1 1956 142 7 0 chr3 118034843 118035153 -100002005 + AluSq SINE Alu 1 312 -1 861 189 7 0 chr3 118035153 118035306 -100001852 + AluJb SINE Alu 134 287 -25 478 256 113 0 chr3 118035324 118035484 -100001674 - L2 LINE L2 -1607 1707 1530 229 287 79 20 chr3 118035627 118035728 -100001430 + MIR SINE MIR 34 140 -68 2113 100 0 22 chr3 118086144 118086455 -99950703 + AluSx SINE Alu 1 304 -8 2057 138 6 0 chr3 118086505 118086816 -99950342 - AluSq SINE Alu 0 313 1 24 53 0 0 chr3 118086992 118087030 -99950128 + AT_rich Low_complexity Low_complexity 1 38 0 2218 181 26 37 chr3 118087042 118087753 -99949405 - L1M2 LINE L1 -686 5862 5148 5082 219 74 33 chr3 118087753 118089584 -99947574 - L1M2 LINE L1 -2343 4039 2133 963 210 0 36 chr3 118089745 118089940 -99947218 - L1MC3 LINE L1 -499 7286 7099 2207 95 0 3 chr3 118090400 118090722 -99946436 - AluSx SINE Alu 0 312 1 2516 264 52 38 chr3 118090733 118091842 -99945316 - L1ME3A LINE L1 0 6170 5060 209 196 22 0 chr3 118091875 118091921 -99945237 + CT-rich Low_complexity Low_complexity 2 48 0 28 0 0 0 chr3 118091942 118091970 -99945188 + AT_rich Low_complexity Low_complexity 1 28 0 225 343 64 6 chr3 118092216 118092388 -99944770 - L1ME3A LINE L1 -1835 4311 4130 1929 149 65 15 chr3 118092620 118092983 -99944175 + MLT2A2 LTR ERVL 1 309 -144 5325 128 8 40 chr3 118092989 118094324 -99942834 - L1PA10 LINE L1 -11 6157 4824 238 317 17 0 chr3 118094635 118094695 -99942463 - L2 LINE L2 -8 3264 3204 246 253 113 73 chr3 118094884 118095034 -99942124 + L2 LINE L2 2604 2759 -555 227 326 51 62 chr3 118095713 118095891 -99941267 - MER5B DNA MER1_type -1 177 2 183 42 0 0 chr3 118098768 118098792 -99938366 + (TTATA)n Simple_repeat Simple_repeat 5 28 0 67 14 0 0 chr3 118099531 118099605 -99937553 + AT_rich Low_complexity Low_complexity 1 74 0 554 311 37 21 chr3 118100205 118100446 -99936712 + MIR SINE MIR 8 252 -10 29 28 0 0 chr3 118101107 118101143 -99936015 + AT_rich Low_complexity Low_complexity 1 36 0 420 394 66 11 chr3 118101802 118102327 -99934831 - L2 LINE L2 -199 3073 2523 807 246 0 33 chr3 118103007 118103218 -99933940 + MER3 DNA MER1_type 2 205 -4 1249 264 87 50 chr3 118103640 118104159 -99932999 - MLT1E LTR MaLR -29 564 27 885 201 55 35 chr3 118104273 118104527 -99932631 + L1MA7 LINE L1 6017 6275 -16 2412 54 6 22 chr3 118104925 118105239 -99931919 + AluY SINE Alu 1 309 -2 2102 113 0 72 chr3 118105300 118105663 -99931495 + MER1B DNA MER1_type 1 337 0 271 317 106 72 chr3 118106193 118106401 -99930757 + L2 LINE L2 2102 2316 -998 22 35 0 0 chr3 118106781 118106810 -99930348 + AT_rich Low_complexity Low_complexity 1 29 0 249 321 18 36 chr3 118107688 118107856 -99929302 + LTR40c LTR ERVL 149 313 -152 1658 130 154 102 chr3 118108243 118108627 -99928531 - MER4A LTR ERV1 0 664 261 582 122 10 10 chr3 118108627 118108725 -99928433 - MER4A LTR ERV1 -566 98 1 230 348 20 54 chr3 118109490 118109694 -99927464 - L2 LINE L2 -474 2840 2644 1505 150 7 7 chr3 118110106 118110392 -99926766 + L1MA4 LINE L1 6015 6300 0 2287 96 3 0 chr3 118110425 118110717 -99926441 - AluSp SINE Alu -20 293 1 215 312 39 13 chr3 118111405 118111482 -99925676 + MIR SINE MIR 19 97 -111 401 336 34 20 chr3 118112242 118112388 -99924770 + MIR SINE MIR 2 149 -113 27 0 0 0 chr3 118113005 118113032 -99924126 + AT_rich Low_complexity Low_complexity 1 27 0 623 288 40 14 chr3 118113302 118113524 -99923634 + LTR16B LTR ERVL 96 323 -141 1671 233 67 6 chr3 118113524 118113885 -99923273 - MSTD LTR MaLR -2 394 12 370 326 38 8 chr3 118113894 118114026 -99923132 + LTR16B LTR ERVL 315 450 -14 181 243 0 0 chr3 118115909 118115946 -99921212 - L2 LINE L2 -1053 2261 2225 467 313 65 75 chr3 118115967 118116338 -99920820 - L2 LINE L2 0 3313 2947 1220 329 78 61 chr3 118116398 118117667 -99919491 - HERVL LTR ERVL -323 5331 4083 223 133 17 17 chr3 118117978 118118038 -99919120 + (TATAA)n Simple_repeat Simple_repeat 5 64 0 23 0 0 0 chr3 118118097 118118120 -99919038 + AT_rich Low_complexity Low_complexity 1 23 0 483 377 38 14 chr3 118118162 118118454 -99918704 - HERVL LTR ERVL -2078 3686 3388 597 235 34 20 chr3 118118464 118118613 -99918545 + MER92C LTR ERV1 1 151 -403 1505 211 22 19 chr3 118119203 118119563 -99917595 - MLT1A1 LTR MaLR -4 361 1 204 182 0 0 chr3 118119897 118119941 -99917217 + (TA)n Simple_repeat Simple_repeat 1 44 0 358 258 89 47 chr3 118119999 118120212 -99916946 + HAL1b LINE L1 745 966 -382 500 30 15 0 chr3 118121948 118122014 -99915144 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 1817 136 9 103 chr3 118122423 118122879 -99914279 - L1MA9 LINE L1 0 6312 5900 22 0 0 0 chr3 118122982 118123004 -99914154 + AT_rich Low_complexity Low_complexity 1 22 0 948 55 79 0 chr3 118124636 118124763 -99912395 + MER85 DNA T2_type 1 137 -2 221 197 16 0 chr3 118124815 118124876 -99912282 + (TA)n Simple_repeat Simple_repeat 1 62 0 2052 92 39 3 chr3 118124877 118125159 -99911999 - AluSg SINE Alu -18 292 1 21 0 0 0 chr3 118125398 118125419 -99911739 + AT_rich Low_complexity Low_complexity 1 21 0 268 319 230 5 chr3 118125821 118126034 -99911124 + MIR SINE MIR 2 262 0 22 0 0 0 chr3 118126502 118126524 -99910634 + AT_rich Low_complexity Low_complexity 1 22 0 233 246 0 14 chr3 118127698 118127767 -99909391 + (TA)n Simple_repeat Simple_repeat 2 69 0 26 23 0 23 chr3 118128932 118128953 -99908205 + AT_rich Low_complexity Low_complexity 1 21 -22 1963 130 25 0 chr3 118128953 118129238 -99907920 - AluSx SINE Alu -20 292 1 26 23 0 23 chr3 118129238 118129260 -99907898 + AT_rich Low_complexity Low_complexity 21 43 0 302 285 146 19 chr3 118129380 118129538 -99907620 - MIR SINE MIR -32 230 53 28 29 0 0 chr3 118129679 118129714 -99907444 + AT_rich Low_complexity Low_complexity 1 35 0 480 200 23 23 chr3 118130115 118130245 -99906913 - L1M LINE L1 -2402 5383 5254 1991 150 121 16 chr3 118130248 118130635 -99906523 - MSTA LTR MaLR 0 428 1 3501 154 16 15 chr3 118130635 118131246 -99905912 - MSTA-int LTR MaLR 0 1580 969 1157 189 126 22 chr3 118131253 118131523 -99905635 - MSTA LTR MaLR -130 298 1 6394 263 56 27 chr3 118131523 118134213 -99902945 - L1M4 LINE L1 -891 5255 2488 1022 223 29 95 chr3 118134211 118134892 -99902266 - L1MCb LINE L1 -5271 774 47 * 249 262 49 0 chr3 118135007 118135068 -99902090 - L1MCb LINE L1 -6360 204 141 243 178 110 68 chr3 118135058 118135123 -99902035 - L1M4 LINE L1 -1676 4470 4409 * 1315 159 4 17 chr3 118135123 118135356 -99901802 - L1MC1 LINE L1 0 6333 6104 243 178 110 68 chr3 118135356 118135436 -99901722 - L1M4 LINE L1 -1737 4409 4319 200 232 56 155 chr3 118135566 118135708 -99901450 - MIR SINE MIR -51 211 84 25 31 0 0 chr3 118136582 118136614 -99900544 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr3 118137124 118137154 -99900004 + AT_rich Low_complexity Low_complexity 1 30 0 225 196 0 0 chr3 118138001 118138052 -99899106 + A-rich Low_complexity Low_complexity 1 51 0 859 240 65 18 chr3 118138202 118138602 -99898556 + L1M4 LINE L1 2911 3329 -2817 282 56 0 0 chr3 118138723 118138759 -99898399 + (CA)n Simple_repeat Simple_repeat 1 36 0 219 259 0 0 chr3 118139113 118139171 -99897987 + A-rich Low_complexity Low_complexity 1 58 0 205 239 45 0 chr3 118139178 118139245 -99897913 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 27 0 0 0 chr3 118139389 118139416 -99897742 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr3 118139503 118139532 -99897626 + AT_rich Low_complexity Low_complexity 1 29 0 1984 156 95 14 chr3 118139554 118139985 -99897173 - L1MA3 LINE L1 -46 6259 5794 279 211 53 0 chr3 118140255 118140369 -99896789 + (TA)n Simple_repeat Simple_repeat 1 120 0 271 258 93 71 chr3 118140455 118141102 -99896056 + L1M4 LINE L1 2786 3446 -2700 7112 237 25 3 chr3 118141370 118142788 -99894370 + L1PA13 LINE L1 167 1615 -5172 346 194 28 0 chr3 118142793 118142865 -99894293 + L1PA13 LINE L1 1721 1794 -4993 12905 120 8 239 chr3 118142869 118144314 -99892844 + L1PA13 LINE L1 2393 4169 -2628 12491 44 3 1 chr3 118144314 118146639 -99890519 - L1PA5 LINE L1 -5 6149 3821 12905 120 8 239 chr3 118146639 118148389 -99888769 + L1PA13 LINE L1 4169 4333 -2464 2292 87 7 0 chr3 118148389 118148688 -99888470 + AluSc SINE Alu 6 306 -3 12905 120 8 239 chr3 118148688 118149821 -99887337 + L1PA13 LINE L1 4333 5725 -1072 3688 171 36 13 chr3 118149975 118151466 -99885692 + L1PA14 LINE L1 4597 6128 -3 279 0 0 0 chr3 118151638 118151669 -99885489 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr3 118152587 118152608 -99884550 + AT_rich Low_complexity Low_complexity 1 21 0 899 213 129 4 chr3 118152869 118153094 -99884064 - MLT1E1 LTR MaLR -401 253 1 1408 301 20 20 chr3 118153183 118153641 -99883517 + ERVL LTR ERVL 4019 4476 -1288 322 368 73 41 chr3 118154023 118154377 -99882781 - L2 LINE L2 -345 2927 2568 27 62 0 0 chr3 118154509 118154557 -99882601 + AT_rich Low_complexity Low_complexity 1 48 0 1427 242 25 6 chr3 118155303 118155625 -99881533 + L1MA3 LINE L1 9 336 -7229 * 6379 175 28 13 chr3 118155614 118158170 -99878988 + L1MA3 LINE L1 5065 7721 -3 335 337 103 11 chr3 118159543 118159727 -99877431 + MIR SINE MIR 20 220 -42 22 35 0 0 chr3 118160213 118160242 -99876916 + AT_rich Low_complexity Low_complexity 1 29 0 2320 97 0 0 chr3 118160806 118161106 -99876052 + AluSc SINE Alu 1 300 -9 383 236 200 0 chr3 118161247 118161357 -99875801 - MER63 DNA MER1_type -78 758 1 414 77 0 0 chr3 118161466 118161518 -99875640 + MSTA LTR MaLR 377 428 0 403 191 26 61 chr3 118161520 118161635 -99875523 - L1MA9 LINE L1 -294 6018 5908 21 0 0 0 chr3 118161689 118161710 -99875448 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 118162530 118162551 -99874607 + AT_rich Low_complexity Low_complexity 1 21 0 1583 218 22 14 chr3 118162631 118162993 -99874165 - MLT1A1 LTR MaLR 0 365 1 582 309 64 10 chr3 118163128 118163332 -99873826 - MIR SINE MIR -44 218 4 330 26 0 0 chr3 118163862 118163901 -99873257 + (CA)n Simple_repeat Simple_repeat 1 39 0 227 220 17 34 chr3 118164190 118164249 -99872909 + HAL1 LINE L1 347 404 -2103 1374 283 66 40 chr3 118164422 118165169 -99871989 + HAL1 LINE L1 607 1372 -1135 260 309 157 19 chr3 118165346 118165608 -99871550 + HAL1 LINE L1 1619 1916 -591 318 237 213 24 chr3 118165664 118165833 -99871325 + HAL1 LINE L1 2014 2214 -293 1686 231 78 12 chr3 118166298 118166784 -99870374 - MLT2B1 LTR ERVL -1 519 2 1896 164 0 0 chr3 118167073 118167371 -99869787 - AluJo SINE Alu -14 298 1 282 211 13 13 chr3 118167794 118167870 -99869288 - L1MA2 LINE L1 -4 6300 6225 201 154 0 0 chr3 118167951 118167990 -99869168 + (TTA)n Simple_repeat Simple_repeat 1 39 0 24 0 0 0 chr3 118168819 118168843 -99868315 + AT_rich Low_complexity Low_complexity 1 24 0 255 316 0 21 chr3 118168843 118168938 -99868220 + L1MC4 LINE L1 6613 6705 -1337 226 327 73 9 chr3 118169075 118169185 -99867973 - MIR SINE MIR 0 262 146 236 121 44 88 chr3 118170088 118170179 -99866979 + (TTA)n Simple_repeat Simple_repeat 2 88 0 1423 218 42 3 chr3 118170398 118170710 -99866448 + MLT1C LTR MaLR 3 326 -141 2437 187 18 0 chr3 118170716 118171160 -99865998 + MER66A LTR ERV1 27 478 0 598 225 43 0 chr3 118171163 118171301 -99865857 + MLT1C LTR MaLR 324 467 0 582 261 199 47 chr3 118175544 118175947 -99861211 + LTR16B LTR ERVL 1 464 0 2018 120 0 32 chr3 118175992 118176300 -99860858 - AluSc SINE Alu -11 298 1 283 377 37 81 chr3 118176795 118177068 -99860090 - L2 LINE L2 -20 3252 2992 1347 253 16 67 chr3 118177123 118177497 -99859661 + LTR16A LTR ERVL 33 384 -66 1821 146 14 88 chr3 118177497 118177915 -99859243 + L1MA9 LINE L1 5924 6310 -2 1347 253 16 67 chr3 118177915 118177971 -99859187 + LTR16A LTR ERVL 384 441 -9 247 239 0 30 chr3 118178137 118178204 -99858954 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 2124 121 3 0 chr3 118178902 118179200 -99857958 + AluSx SINE Alu 1 299 -13 267 319 35 35 chr3 118181681 118181794 -99855364 + MIR3 SINE MIR 83 195 -13 1874 224 48 36 chr3 118181822 118182449 -99854709 - MER21B LTR ERV1 -81 782 98 371 286 11 29 chr3 118182418 118182568 -99854590 - MER21B LTR ERV1 -403 202 17 * 2126 210 19 31 chr3 118182674 118183154 -99854004 - MER21B-int LTR ERV1 -58 4133 3660 2849 223 35 39 chr3 118183162 118183874 -99853284 - MER72 LTR ERV1 -9 713 5 6397 226 42 25 chr3 118183874 118185343 -99851815 - MER21B-int LTR ERV1 -523 3668 2175 1154 234 16 69 chr3 118185373 118185676 -99851482 - MER21B-int LTR ERV1 -2088 2103 1817 311 305 24 0 chr3 118185677 118185759 -99851399 - MER21B LTR ERV1 -457 406 323 393 200 0 0 chr3 118185919 118185984 -99851174 - MER21B LTR ERV1 -780 83 19 23 33 0 0 chr3 118186036 118186066 -99851092 + AT_rich Low_complexity Low_complexity 1 30 0 1793 213 3 3 chr3 118186203 118186565 -99850593 - MLT1A1 LTR MaLR -2 363 2 663 299 60 4 chr3 118186619 118186853 -99850305 + MIR SINE MIR 15 261 -1 25 31 0 0 chr3 118186853 118186885 -99850273 + AT_rich Low_complexity Low_complexity 1 32 0 425 325 28 8 chr3 118186896 118187067 -99850091 - MIR SINE MIR -65 143 5 302 323 57 32 chr3 118187219 118187377 -99849781 - MIR3 SINE MIR -28 180 19 1813 170 41 3 chr3 118187607 118187949 -99849209 - L1MC1 LINE L1 -1 6332 5978 670 210 63 0 chr3 118188375 118188518 -99848640 + MLT1C LTR MaLR 56 207 -260 482 279 62 40 chr3 118188533 118188767 -99848391 - MER102b DNA MER1_type -1096 332 90 2310 81 0 10 chr3 118188767 118189076 -99848082 + AluSq SINE Alu 8 313 0 482 279 62 40 chr3 118189076 118189117 -99848041 - MER102b DNA MER1_type -1338 90 51 25 51 0 0 chr3 118189223 118189262 -99847896 + AT_rich Low_complexity Low_complexity 1 39 0 32 0 0 0 chr3 118189890 118189922 -99847236 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr3 118193233 118193261 -99843897 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr3 118193793 118193832 -99843326 + AT_rich Low_complexity Low_complexity 1 39 0 326 240 256 8 chr3 118194224 118194349 -99842809 + L2 LINE L2 3158 3313 0 220 326 134 76 chr3 118194348 118194624 -99842534 + L2 LINE L2 2225 2516 -798 * 5569 192 32 31 chr3 118194727 118196043 -99841115 - L1 LINE L1 -1104 5042 3726 4727 179 13 8 chr3 118196050 118197134 -99840024 + L1MB1 LINE L1 5079 6168 0 206 260 94 94 chr3 118197372 118197553 -99839605 + L2 LINE L2 1783 1963 -1351 21 71 0 0 chr3 118197656 118197698 -99839460 + AT_rich Low_complexity Low_complexity 1 42 0 2053 131 0 0 chr3 118197875 118198172 -99838986 - AluSg SINE Alu -13 297 1 21 71 0 0 chr3 118198466 118198508 -99838650 + AT_rich Low_complexity Low_complexity 1 42 0 194 268 182 45 chr3 118198513 118198711 -99838447 + L2 LINE L2 3027 3251 -62 217 238 0 0 chr3 118198744 118198786 -99838372 + A-rich Low_complexity Low_complexity 5 46 0 22 0 0 0 chr3 118199134 118199156 -99838002 + AT_rich Low_complexity Low_complexity 1 22 0 6992 55 0 0 chr3 118199178 118200317 -99836841 - L1PA5 LINE L1 -7 6147 5001 2591 38 0 13 chr3 118201000 118201313 -99835845 - AluY SINE Alu -2 309 1 190 361 46 23 chr3 118202022 118202152 -99835006 - L2 LINE L2 -1 3271 3139 2147 124 0 9 chr3 118202279 118202594 -99834564 - AluSq SINE Alu -1 312 1 410 303 77 59 chr3 118202644 118203047 -99834111 - L2 LINE L2 0 3313 2824 581 216 0 0 chr3 118203386 118203497 -99833661 + MER45A DNA AcHobo 68 178 0 519 347 75 31 chr3 118203671 118204282 -99832876 + L1M4 LINE L1 4677 5314 -832 287 321 79 29 chr3 118204568 118204708 -99832450 - L2 LINE L2 -1 3271 3125 40 49 0 0 chr3 118204998 118205059 -99832099 + AT_rich Low_complexity Low_complexity 1 61 0 291 299 104 52 chr3 118205073 118205227 -99831931 - MIR SINE MIR -76 186 25 1326 184 58 83 chr3 118205361 118205796 -99831362 + L1MA9 LINE L1 5875 6298 -14 23 54 0 0 chr3 118205796 118205833 -99831325 + AT_rich Low_complexity Low_complexity 1 37 0 335 308 217 5 chr3 118206150 118206348 -99830810 - L2 LINE L2 0 3313 3074 250 280 26 0 chr3 118206884 118206962 -99830196 + MIR SINE MIR 53 131 -77 1286 208 139 30 chr3 118207214 118207618 -99829540 - MER39 LTR ERV1 -3 704 257 236 380 28 9 chr3 118208063 118208171 -99828987 + MIR3 SINE MIR 15 124 -84 413 138 12 0 chr3 118208178 118208258 -99828900 + CT-rich Low_complexity Low_complexity 1 81 0 26 0 0 0 chr3 118210449 118210475 -99826683 + AT_rich Low_complexity Low_complexity 1 26 0 1179 364 29 0 chr3 118210518 118210963 -99826195 + MER45C DNA AcHobo 2 459 -494 203 229 257 37 chr3 118211827 118211936 -99825222 + L2 LINE L2 2397 2529 -785 193 399 36 16 chr3 118211968 118212161 -99824997 + L2 LINE L2 2764 2960 -354 201 423 47 23 chr3 118212435 118212650 -99824508 + L2 LINE L2 2826 3045 -227 376 245 172 60 chr3 118213319 118213470 -99823688 - MLT1J LTR MaLR -335 176 9 650 275 114 13 chr3 118213546 118213782 -99823376 + MIR SINE MIR 3 262 0 2259 97 0 0 chr3 118214853 118215153 -99822005 - AluSg SINE Alu -10 300 1 219 88 0 0 chr3 118215371 118215405 -99821753 + (A)n Simple_repeat Simple_repeat 1 34 0 247 49 49 0 chr3 118216367 118216408 -99820750 + (TA)n Simple_repeat Simple_repeat 1 43 0 1244 246 59 17 chr3 118216972 118217326 -99819832 - MLT1A2 LTR MaLR -4 370 2 495 267 17 81 chr3 118217504 118217740 -99819418 - MLT1D LTR MaLR -284 221 1 210 37 0 0 chr3 118218787 118218814 -99818344 + (CA)n Simple_repeat Simple_repeat 1 27 0 4953 168 36 15 chr3 118218945 118219880 -99817278 + Tigger1 DNA MER2_type 1 955 -1463 781 77 39 13 chr3 118219897 118220052 -99817106 + C-rich Low_complexity Low_complexity 3 161 0 195 200 29 14 chr3 118220057 118220127 -99817031 + CT-rich Low_complexity Low_complexity 2 72 0 * 218 32 32 0 chr3 118220123 118220154 -99817004 + (TC)n Simple_repeat Simple_repeat 1 32 0 599 239 0 0 chr3 118220156 118220273 -99816885 - FLAM_A SINE Alu -18 124 8 2567 151 2 7 chr3 118220283 118220701 -99816457 + Tigger1 DNA MER2_type 970 1385 -1033 3426 145 50 10 chr3 118220704 118221325 -99815833 - L1MA4 LINE L1 -7 6293 5648 235 152 0 0 chr3 118221329 118221375 -99815783 + LTR66 LTR ERVL 394 439 -171 247 264 23 0 chr3 118221387 118221474 -99815684 - L1MC4 LINE L1 -1339 6703 6615 955 170 36 0 chr3 118221496 118221695 -99815463 - L1MA4 LINE L1 -644 5656 5447 444 189 116 21 chr3 118221695 118221790 -99815368 - Tigger1 DNA MER2_type -2314 104 1 1249 247 59 84 chr3 118221806 118222721 -99814437 - L1MEc LINE L1 -3045 3170 2279 402 235 15 59 chr3 118222726 118222862 -99814296 - L1MEc LINE L1 -4145 2251 2122 209 134 60 30 chr3 118222955 118223022 -99814136 + (TATAA)n Simple_repeat Simple_repeat 5 73 0 443 224 117 37 chr3 118223063 118223277 -99813881 - L1MC5 LINE L1 -482 7479 7249 470 337 59 74 chr3 118223341 118224100 -99813058 + L1 LINE L1 4227 4974 -1172 199 333 151 32 chr3 118225193 118225319 -99811839 + MIR3 SINE MIR 37 177 -31 198 347 82 0 chr3 118227237 118227335 -99809823 - MIR SINE MIR -30 232 127 409 340 132 14 chr3 118227656 118227944 -99809214 + LTR33A LTR ERVL 44 365 -158 6898 223 88 42 chr3 118227944 118228371 -99808787 - L1M1 LINE L1 -938 6627 6221 1921 130 16 0 chr3 118228371 118228678 -99808480 - AluSx SINE Alu 0 312 1 6898 223 88 42 chr3 118228678 118230784 -99806374 - L1M1 LINE L1 -1344 6221 3976 802 210 46 45 chr3 118230788 118231079 -99806079 - MLT1A1 LTR MaLR 0 365 4 1078 249 23 49 chr3 118231084 118231359 -99805799 - L1M1 LINE L1 -3592 3973 3711 2034 135 0 29 chr3 118231359 118231671 -99805487 - AluSx SINE Alu -9 303 1 1078 249 23 49 chr3 118231671 118231824 -99805334 - L1M1 LINE L1 -3854 3711 3556 1928 172 0 0 chr3 118231825 118232121 -99805037 - AluSx SINE Alu -16 296 1 1378 259 77 48 chr3 118232131 118232381 -99804777 - L1M4 LINE L1 -4085 2561 2320 223 212 59 12 chr3 118232381 118232466 -99804692 + (CATATA)n Simple_repeat Simple_repeat 2 90 0 1378 259 77 48 chr3 118232466 118234504 -99802654 - L1M4 LINE L1 -4326 2320 11 1731 186 0 0 chr3 118234678 118234958 -99802200 + AluJb SINE Alu 1 280 -32 995 205 57 0 chr3 118234975 118235204 -99801954 - MER33 DNA MER1_type -82 242 1 1006 263 5 0 chr3 118235337 118235554 -99801604 + MER58A DNA MER1_type 7 224 0 42 20 0 0 chr3 118235570 118235619 -99801539 + AT_rich Low_complexity Low_complexity 1 49 0 229 154 26 26 chr3 118235625 118235742 -99801416 + (TTAA)n Simple_repeat Simple_repeat 4 120 0 40 21 0 0 chr3 118235742 118235789 -99801369 + AT_rich Low_complexity Low_complexity 1 47 0 1856 151 51 38 chr3 118237175 118237545 -99799613 - THE1C LTR MaLR 0 375 1 8946 139 79 5 chr3 118237545 118239016 -99798142 - THE1C-int LTR MaLR 0 1580 2 1801 164 52 25 chr3 118239022 118239387 -99797771 - THE1C LTR MaLR 0 375 1 639 275 62 8 chr3 118239523 118239767 -99797391 + L1MCc LINE L1 20 276 -6147 12649 179 36 39 chr3 118289774 118292241 -99744917 - L1M1 LINE L1 -4989 2576 116 2342 73 0 0 chr3 118292241 118292542 -99744616 - AluY SINE Alu -8 303 3 12649 179 36 39 chr3 118292542 118292644 -99744514 - L1M1 LINE L1 -7449 116 15 438 290 72 68 chr3 118292800 118293093 -99744065 - L1M4 LINE L1 -1446 4700 4407 2511 240 42 24 chr3 118293124 118293209 -99743949 + L1ME1 LINE L1 5018 5100 -1066 1229 227 67 65 chr3 118293209 118293672 -99743486 + MLT2C2 LTR ERVL 1 464 0 2511 240 42 24 chr3 118293672 118294671 -99742487 + L1ME1 LINE L1 5100 6018 -148 184 320 39 58 chr3 118294888 118294991 -99742167 - MIR SINE MIR -56 206 106 50 18 0 0 chr3 118295040 118295097 -99742061 + AT_rich Low_complexity Low_complexity 1 57 0 699 213 8 0 chr3 118295104 118295231 -99741927 - FLAM_C SINE Alu -15 128 1 883 227 55 31 chr3 118296185 118296536 -99740622 - MSTD LTR MaLR 0 396 1 198 0 0 0 chr3 118296604 118296626 -99740532 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 234 385 28 21 chr3 118297796 118297939 -99739219 - MIR3 SINE MIR -48 160 17 303 352 49 43 chr3 118300135 118300459 -99736699 + L2 LINE L2 2952 3277 -36 202 352 66 0 chr3 118300788 118300879 -99736279 + MIR SINE MIR 42 138 -124 365 254 59 25 chr3 118301786 118301904 -99735254 + MIR SINE MIR 41 162 -100 21 57 0 0 chr3 118302395 118302430 -99734728 + AT_rich Low_complexity Low_complexity 1 35 0 247 288 0 0 chr3 118302685 118302758 -99734400 + (GTTTG)n Simple_repeat Simple_repeat 2 74 0 22 0 0 0 chr3 118302922 118302944 -99734214 + AT_rich Low_complexity Low_complexity 1 22 0 229 256 192 0 chr3 118303114 118303192 -99733966 - MIR SINE MIR -22 240 148 396 342 19 25 chr3 118304418 118304576 -99732582 + MER5A DNA MER1_type 1 157 -32 954 281 84 6 chr3 118304576 118304907 -99732251 - L1ME3A LINE L1 0 6170 5801 189 214 0 0 chr3 118305984 118306026 -99731132 + (TG)n Simple_repeat Simple_repeat 1 42 0 23 0 0 0 chr3 118306839 118306862 -99730296 + AT_rich Low_complexity Low_complexity 1 23 0 180 111 0 0 chr3 118307070 118307097 -99730061 + (T)n Simple_repeat Simple_repeat 1 27 0 403 271 19 9 chr3 118307100 118307207 -99729951 - MER50-int LTR ERV1 -7086 119 12 1267 119 11 116 chr3 118307217 118307494 -99729664 - MER50 LTR ERV1 -1 733 486 552 314 96 108 chr3 118307496 118308055 -99729103 + L2 LINE L2 2735 3313 0 23 0 0 0 chr3 118308438 118308461 -99728697 + AT_rich Low_complexity Low_complexity 1 23 0 206 299 137 0 chr3 118309410 118309527 -99727631 - MIR SINE MIR -53 209 77 1455 209 105 86 chr3 118310477 118310903 -99726255 - MLT1E1 LTR MaLR -41 613 171 531 129 21 0 chr3 118310903 118310996 -99726162 - L1MA10 LINE L1 -2 6332 6238 1455 209 105 86 chr3 118310996 118311171 -99725987 - MLT1E1 LTR MaLR -483 171 1 211 331 48 57 chr3 118312026 118312150 -99725008 + L3 LINE CR1 1436 1558 -19 12285 26 0 0 chr3 118312985 118315205 -99721953 + L1PA2 LINE L1 3933 6152 -3 24 32 0 0 chr3 118316841 118316872 -99720286 + AT_rich Low_complexity Low_complexity 1 31 0 2134 187 58 12 chr3 118317170 118317181 -99719977 - MLT2C2 LTR ERVL -43 477 468 342 67 0 0 chr3 118317181 118317226 -99719932 + (CA)n Simple_repeat Simple_repeat 2 46 0 2134 187 58 12 chr3 118317226 118317631 -99719527 - MLT2C2 LTR ERVL -52 468 1 444 257 126 3 chr3 118317828 118318002 -99719156 - L1ME3A LINE L1 -356 5765 5573 614 272 54 72 chr3 118318007 118318338 -99718820 - MER46C DNA MER2_type 0 338 14 844 271 31 60 chr3 118318350 118318998 -99718160 - L1ME3A LINE L1 -657 5513 4879 3510 108 13 2 chr3 118319002 118319530 -99717628 - L1MA1 LINE L1 0 7721 7188 261 0 0 0 chr3 118319536 118319565 -99717593 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 4833 153 27 30 chr3 118319976 118321960 -99715198 - L1MA1 LINE L1 -520 7201 5213 2099 137 0 0 chr3 118321960 118322260 -99714898 + AluSq SINE Alu 1 300 -13 4833 153 27 30 chr3 118322260 118324586 -99712572 - L1MA1 LINE L1 -2508 5213 2814 1176 341 48 27 chr3 118324687 118325420 -99711738 + HERV16 LTR ERVL 2582 3374 -1900 1984 243 78 48 chr3 118325485 118326208 -99710950 - L2 LINE L2 -629 2685 1942 263 316 84 7 chr3 118326820 118326975 -99710183 - MIR SINE MIR -25 237 71 336 245 19 84 chr3 118327075 118327230 -99709928 + L1M4 LINE L1 3133 3277 -2869 263 378 33 20 chr3 118327544 118327695 -99709463 - L2 LINE L2 -540 2774 2622 29 28 0 0 chr3 118328049 118328085 -99709073 + AT_rich Low_complexity Low_complexity 1 36 0 28 0 0 0 chr3 118328398 118328426 -99708732 + AT_rich Low_complexity Low_complexity 1 28 0 363 349 0 54 chr3 118328507 118328599 -99708559 + MIR SINE MIR 8 91 -171 1445 223 77 25 chr3 118328599 118329043 -99708115 + MLT1C LTR MaLR 1 467 0 363 349 0 54 chr3 118329043 118329099 -99708059 + MIR SINE MIR 91 148 -114 2243 81 3 0 chr3 118329100 118329395 -99707763 + AluY SINE Alu 1 296 -15 569 232 45 19 chr3 118329424 118329579 -99707579 + MIR SINE MIR 101 259 -3 185 342 13 0 chr3 118329584 118329663 -99707495 + MIR SINE MIR 183 262 0 187 297 81 0 chr3 118329665 118329739 -99707419 + MIR SINE MIR 182 261 -1 23 0 0 0 chr3 118329750 118329773 -99707385 + AT_rich Low_complexity Low_complexity 1 23 0 387 221 46 38 chr3 118330268 118330399 -99706759 + L1MC4 LINE L1 7766 7897 -145 1810 169 23 12 chr3 118330413 118330756 -99706402 + MER7A DNA MER2_type 1 345 -1 187 130 22 22 chr3 118330757 118330803 -99706355 + (CATA)n Simple_repeat Simple_repeat 3 48 0 239 231 8 58 chr3 118330821 118330942 -99706216 + L1MC4 LINE L1 7922 8036 -6 973 281 50 44 chr3 118332172 118332683 -99704475 - MLT1H LTR MaLR -8 582 25 207 158 0 70 chr3 118332746 118332803 -99704355 + (CAAAC)n Simple_repeat Simple_repeat 2 54 0 269 309 79 7 chr3 118332889 118333041 -99704117 + L1ME LINE L1 5568 5730 -391 21 0 0 0 chr3 118334802 118334823 -99702335 + AT_rich Low_complexity Low_complexity 1 21 0 490 122 134 0 chr3 118335359 118335441 -99701717 + L1MB3 LINE L1 6079 6171 -12 733 243 136 60 chr3 118335615 118335932 -99701226 + MLT1D LTR MaLR 20 360 -145 4445 199 21 22 chr3 118335932 118337094 -99700064 + L1MA9 LINE L1 4327 5485 -683 963 140 0 0 chr3 118337094 118337237 -99699921 + AluJb SINE Alu 1 143 -169 474 135 0 0 chr3 118337237 118337311 -99699847 - FRAM SINE Alu -81 95 22 1303 209 3 30 chr3 118337421 118337722 -99699436 + L1MA9 LINE L1 5501 5793 -519 734 161 20 44 chr3 118337741 118337907 -99699251 + L1MA9 LINE L1 5783 5941 -350 3143 144 39 6 chr3 118337919 118338439 -99698719 - MER6A DNA MER2_type -67 538 2 1053 107 0 0 chr3 118339778 118339928 -99697230 - L1PA13 LINE L1 -11 6152 6003 192 324 73 0 chr3 118340320 118340388 -99696770 + MIR SINE MIR 110 182 -80 24 32 0 0 chr3 118340462 118340493 -99696665 + AT_rich Low_complexity Low_complexity 1 31 0 266 109 0 0 chr3 118340712 118340758 -99696400 - L1MA8 LINE L1 -3 6288 6243 210 271 0 0 chr3 118340845 118340893 -99696265 - MIR SINE MIR -10 252 205 204 111 0 0 chr3 118343037 118343073 -99694085 + (CA)n Simple_repeat Simple_repeat 1 36 0 8993 201 51 13 chr3 118343075 118344882 -99692276 - ERVL LTR ERVL -340 5424 3550 5226 167 27 8 chr3 118344882 118345841 -99691317 - Tigger1 DNA MER2_type 0 2418 1442 2459 188 46 0 chr3 118345833 118346286 -99690872 - Tigger1 DNA MER2_type -1916 502 29 * 7764 240 83 29 chr3 118346287 118348394 -99688764 - ERVL LTR ERVL -2514 3250 1030 364 277 127 24 chr3 118348850 118349016 -99688142 - MIR SINE MIR -13 249 67 370 273 16 16 chr3 118349282 118349304 -99687854 + L2 LINE L2 3118 3139 -174 659 263 17 6 chr3 118349304 118349479 -99687679 + MER45A DNA AcHobo 1 177 -1 370 273 16 16 chr3 118349479 118349577 -99687581 + L2 LINE L2 3138 3238 -75 4516 211 66 31 chr3 118350231 118351337 -99685821 - L1M4 LINE L1 -4848 1694 550 739 328 90 3 chr3 118351842 118352177 -99684981 + Charlie2 DNA MER1_type 165 528 -2254 2158 269 114 15 chr3 118352242 118353223 -99683935 + Charlie2a DNA MER1_type 1611 2723 -139 2076 117 0 0 chr3 118353223 118353527 -99683631 + AluSg SINE Alu 1 304 0 2158 269 114 15 chr3 118353527 118353683 -99683475 + Charlie2a DNA MER1_type 2723 2862 0 21 0 0 0 chr3 118353824 118353845 -99683313 + AT_rich Low_complexity Low_complexity 1 21 0 333 316 26 42 chr3 118354185 118354375 -99682783 - MIR SINE MIR -48 214 28 368 331 21 14 chr3 118354986 118355128 -99682030 - MIR3 SINE MIR -4 204 62 687 286 4 52 chr3 118355470 118355722 -99681436 - MER102b DNA MER1_type -23 318 79 244 160 40 0 chr3 118355732 118355782 -99681376 + L1MA10 LINE L1 6276 6327 -7 278 274 126 0 chr3 118356524 118356619 -99680539 - MIR SINE MIR -65 197 91 41 21 0 0 chr3 118356787 118356835 -99680323 + AT_rich Low_complexity Low_complexity 1 48 0 310 239 135 25 chr3 118356877 118357040 -99680118 - L1ME4a LINE L1 -265 5856 5676 521 258 40 24 chr3 118357118 118357242 -99679916 + MIR SINE MIR 37 162 -100 295 280 40 10 chr3 118357289 118357389 -99679769 + MIR SINE MIR 160 262 0 344 350 30 10 chr3 118357401 118357601 -99679557 - L1ME4a LINE L1 -768 5378 5175 3607 199 42 75 chr3 118357650 118358653 -99678505 - L1MA10 LINE L1 -53 6281 5312 5360 231 48 22 chr3 118358659 118360282 -99676876 - L1MA10 LINE L1 -1590 4556 2891 2219 96 3 0 chr3 118360734 118361026 -99676132 - AluSp SINE Alu -20 293 1 2016 101 0 0 chr3 118362250 118362528 -99674630 + L1P5 LINE L1 5388 5665 -486 761 329 29 63 chr3 118364519 118364930 -99672228 - L2 LINE L2 -4 3309 2913 1548 221 150 2 chr3 118365245 118365666 -99671492 + MLT1D LTR MaLR 15 497 -8 201 296 112 66 chr3 118366239 118366391 -99670767 + MIR SINE MIR 58 216 -46 392 274 43 8 chr3 118366415 118366532 -99670626 - MIR3 SINE MIR -13 195 75 4768 187 63 8 chr3 118367113 118368162 -99668996 + L1PA16 LINE L1 4411 5587 -579 212 0 36 0 chr3 118368162 118368190 -99668968 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4768 187 63 8 chr3 118368190 118368794 -99668364 + L1PA16 LINE L1 5587 6157 -9 34 55 0 0 chr3 118368841 118368896 -99668262 + AT_rich Low_complexity Low_complexity 1 55 0 1636 186 20 102 chr3 118370561 118371012 -99666146 - MLT2D LTR ERVL 0 414 1 1821 175 75 14 chr3 118371631 118372002 -99665156 + MSTD LTR MaLR 1 394 -2 239 283 0 0 chr3 118372053 118372106 -99665052 + (ATGGTG)n Simple_repeat Simple_repeat 4 56 0 245 171 0 0 chr3 118372774 118372815 -99664343 - MER112 DNA MER1_type -219 41 1 619 197 8 0 chr3 118373438 118373560 -99663598 + MLT1B LTR MaLR 1 123 -267 1463 197 20 20 chr3 118373580 118373885 -99663273 + MLT1B LTR MaLR 78 382 -8 24 32 0 0 chr3 118374466 118374497 -99662661 + AT_rich Low_complexity Low_complexity 1 31 0 299 206 76 22 chr3 118374897 118374989 -99662169 - MIR SINE MIR -70 192 96 23 68 0 0 chr3 118375723 118375767 -99661391 + AT_rich Low_complexity Low_complexity 1 44 0 777 188 12 12 chr3 118376987 118377147 -99660011 + MLT1A1 LTR MaLR 2 161 -204 1329 308 80 45 chr3 118377147 118377259 -99659899 - HERV16 LTR ERVL -3222 1774 1667 850 177 22 0 chr3 118377259 118377440 -99659718 - L1MA7 LINE L1 0 6291 6107 1329 308 80 45 chr3 118377440 118378143 -99659015 - HERV16 LTR ERVL -3329 1667 931 1186 164 66 138 chr3 118378469 118378896 -99658262 + MSTD LTR MaLR 1 396 0 771 284 55 69 chr3 118379411 118379773 -99657385 - LTR16B LTR ERVL -6 458 102 186 133 0 0 chr3 118380201 118380231 -99656927 + (CA)n Simple_repeat Simple_repeat 1 30 0 3095 184 14 17 chr3 118380378 118381013 -99656145 - L1MA7 LINE L1 -2 6289 5657 24 32 0 0 chr3 118381434 118381465 -99655693 + AT_rich Low_complexity Low_complexity 1 31 0 1655 153 4 4 chr3 118381654 118381928 -99655230 - L1PA16 LINE L1 -45 6121 5848 21 57 0 0 chr3 118382259 118382294 -99654864 + AT_rich Low_complexity Low_complexity 1 35 0 421 380 22 9 chr3 118382322 118382546 -99654612 - L2 LINE L2 -259 3054 2828 22 94 0 0 chr3 118382667 118382731 -99654427 + AT_rich Low_complexity Low_complexity 1 64 0 411 201 22 45 chr3 118382775 118382954 -99654204 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 21 57 0 0 chr3 118382959 118382994 -99654164 + AT_rich Low_complexity Low_complexity 1 35 0 242 166 35 41 chr3 118382995 118383164 -99653994 + (TA)n Simple_repeat Simple_repeat 2 169 0 366 223 66 14 chr3 118383431 118383576 -99653582 + MLT1J2 LTR MaLR 67 262 -249 181 362 95 0 chr3 118383981 118384086 -99653072 - MIR SINE MIR -58 150 36 203 235 39 0 chr3 118384097 118384148 -99653010 + (TATG)n Simple_repeat Simple_repeat 3 55 0 419 329 9 70 chr3 118384250 118384463 -99652695 + MIR3 SINE MIR 5 204 -4 487 317 67 40 chr3 118385615 118385839 -99651319 - MIR SINE MIR -13 249 20 248 305 120 5 chr3 118386490 118386690 -99650468 + L1M4 LINE L1 3621 3843 -2303 44 35 0 0 chr3 118387017 118387075 -99650083 + AT_rich Low_complexity Low_complexity 1 58 0 21 36 0 0 chr3 118387089 118387117 -99650041 + AT_rich Low_complexity Low_complexity 1 28 0 260 297 68 34 chr3 118388326 118388444 -99648714 + L2 LINE L2 3184 3305 -8 23 33 0 0 chr3 118388748 118388778 -99648380 + AT_rich Low_complexity Low_complexity 1 30 0 26997 59 36 4 chr3 118389438 118393059 -99644099 + L1P LINE L1 2 3738 -2408 1788 236 65 23 chr3 118393209 118393828 -99643330 + L1ME2 LINE L1 5513 6157 -7 1124 243 32 40 chr3 118395281 118395551 -99641607 + L1MC/D LINE L1 34 302 -6238 13219 152 39 11 chr3 118395551 118397901 -99639257 + Tigger1 DNA MER2_type 2 2418 0 1124 243 32 40 chr3 118397901 118398000 -99639158 + L1MC/D LINE L1 302 400 -6140 3627 224 55 50 chr3 118398324 118398756 -99638402 + L1MC/D LINE L1 1010 1438 -5102 1052 81 23 11 chr3 118398756 118398930 -99638228 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 3627 224 55 50 chr3 118398930 118399759 -99637399 + L1MC/D LINE L1 1438 2277 -4263 1029 236 41 0 chr3 118399763 118400034 -99637124 + L1MC/D LINE L1 5795 6076 -560 319 354 51 17 chr3 118400101 118400276 -99636882 + HAL1 LINE L1 419 599 -1908 266 250 25 25 chr3 118400527 118400607 -99636551 + MLT1L LTR MaLR 449 528 -87 420 256 0 11 chr3 118401002 118401092 -99636066 + L1M3b LINE L1 1 89 -6192 2793 275 44 62 chr3 118401131 118402852 -99634306 + L1M3b LINE L1 335 1854 -4497 296 255 0 20 chr3 118402975 118403073 -99634085 + HAL1 LINE L1 2114 2209 -298 940 289 65 40 chr3 118403219 118403620 -99633538 + L2 LINE L2 2901 3311 -2 288 154 0 0 chr3 118405157 118405209 -99631949 + (TA)n Simple_repeat Simple_repeat 1 52 0 22 0 0 0 chr3 118406267 118406289 -99630869 + AT_rich Low_complexity Low_complexity 1 22 0 556 293 47 35 chr3 118406593 118407020 -99630138 + HAL1b LINE L1 97 528 -820 536 260 24 82 chr3 118407329 118407537 -99629621 - MIR SINE MIR -34 228 33 423 179 0 98 chr3 118409030 118409153 -99628005 + LTR48 LTR ERV1 605 715 -72 30408 119 7 61 chr3 118409179 118415038 -99622120 + L1PA7 LINE L1 12 5483 -671 2360 94 0 0 chr3 118415038 118415335 -99621823 - AluY SINE Alu -14 297 1 30408 119 7 61 chr3 118415335 118415941 -99621217 + L1PA7 LINE L1 5483 6120 -34 393 117 0 0 chr3 118416093 118416153 -99621005 + (TA)n Simple_repeat Simple_repeat 1 60 0 2053 152 0 0 chr3 118416713 118417023 -99620135 - AluSg SINE Alu 0 310 1 22 35 0 0 chr3 118417025 118417054 -99620104 + AT_rich Low_complexity Low_complexity 1 29 0 362 233 98 80 chr3 118417116 118417171 -99619987 + MIR SINE MIR 97 150 -112 2045 84 35 17 chr3 118417171 118417458 -99619700 + AluSc SINE Alu 1 292 -17 362 233 98 80 chr3 118417458 118417565 -99619593 + MIR SINE MIR 150 262 0 2192 112 39 13 chr3 118417993 118418377 -99618781 + L1MA3 LINE L1 5912 6305 0 609 226 9 0 chr3 118419224 118419339 -99617819 + FLAM_C SINE Alu 1 116 -17 504 233 68 0 chr3 118419361 118419407 -99617751 + FLAM_A SINE Alu 1 42 -269 2041 136 54 25 chr3 118419407 118419761 -99617397 + THE1B LTR MaLR 1 364 0 504 233 68 0 chr3 118419761 118419847 -99617311 + FLAM_A SINE Alu 42 142 -169 24 32 0 0 chr3 118420068 118420099 -99617059 + AT_rich Low_complexity Low_complexity 1 31 0 1728 171 3 34 chr3 118420251 118420607 -99616551 - AluJo SINE Alu 0 346 1 189 0 0 0 chr3 118421255 118421276 -99615882 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 13649 200 82 9 chr3 118421278 118427651 -99609507 - L1PB1 LINE L1 -13 6854 6 231 167 0 0 chr3 118427742 118427784 -99609374 + T-rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr3 118428407 118428431 -99608727 + AT_rich Low_complexity Low_complexity 1 24 0 953 108 7 0 chr3 118428671 118428810 -99608348 - L1MA2 LINE L1 0 6304 6165 470 215 120 120 chr3 118428916 118428982 -99608176 + L1ME4a LINE L1 5663 5728 -393 2164 131 0 10 chr3 118428982 118429294 -99607864 + AluSg SINE Alu 1 309 -1 470 215 120 120 chr3 118429294 118429609 -99607549 + L1ME4a LINE L1 5727 6044 -77 3880 154 31 21 chr3 118429693 118430454 -99606704 - L1MA4 LINE L1 -5 6295 5527 236 241 0 36 chr3 118430527 118430610 -99606548 + A-rich Low_complexity Low_complexity 1 80 0 1727 165 0 14 chr3 118431059 118431356 -99605802 - AluJb SINE Alu -19 293 1 318 269 0 0 chr3 118431356 118431434 -99605724 - MIR SINE MIR -111 151 74 838 341 26 16 chr3 118431813 118432121 -99605037 + LTR16A LTR ERVL 140 450 0 893 311 46 14 chr3 118432121 118432487 -99604671 + HERV16 LTR ERVL 1 378 -4618 515 257 9 0 chr3 118432525 118432638 -99604520 - MER8 DNA MER2_type 0 239 126 326 227 10 72 chr3 118432638 118432735 -99604423 - HERV16 LTR ERVL -2221 2775 2685 509 286 53 12 chr3 118432880 118433051 -99604107 + MIR SINE MIR 85 262 0 254 294 8 76 chr3 118434073 118434192 -99602966 + L2 LINE L2 3147 3257 -15 1335 212 0 38 chr3 118434542 118434830 -99602328 - AluJo SINE Alu -34 278 2 22 0 0 0 chr3 118434916 118434938 -99602220 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 118435460 118435488 -99601670 + AT_rich Low_complexity Low_complexity 1 28 0 216 272 37 110 chr3 118436428 118436564 -99600594 + MIR SINE MIR 16 141 -67 653 284 79 69 chr3 118436614 118437041 -99600117 + MLT1H1 LTR MaLR 4 429 -113 1725 169 82 20 chr3 118438190 118438533 -99598625 + THE1B LTR MaLR 1 364 0 11286 113 7 0 chr3 118438533 118440102 -99597056 + THE1B-int LTR MaLR 1 1580 0 2313 100 19 35 chr3 118440102 118440472 -99596686 + THE1B LTR MaLR 1 364 0 4617 159 41 6 chr3 118442239 118443105 -99594053 - MER4D LTR ERV1 0 862 1 1023 294 108 29 chr3 118443363 118443911 -99593247 + MLT1E LTR MaLR 1 591 -2 2017 141 3 3 chr3 118444109 118444415 -99592743 + AluSx SINE Alu 1 306 -6 190 304 25 13 chr3 118444417 118444496 -99592662 - L2 LINE L2 -8 3305 3226 388 258 80 33 chr3 118444509 118444660 -99592498 + L1ME LINE L1 12 169 -5901 268 206 72 22 chr3 118444841 118444941 -99592217 + L1M4 LINE L1 5246 5350 -805 5058 155 22 27 chr3 118445135 118446063 -99591095 + MER49 LTR ERV1 1 923 0 523 241 13 51 chr3 118446348 118446506 -99590652 - MER97c DNA MER1_type? -913 177 26 2560 159 5 7 chr3 118447599 118448034 -99589124 + MSTA-int LTR MaLR 1218 1651 0 2286 190 14 2 chr3 118448036 118448457 -99588701 + MSTA LTR MaLR 3 428 0 8407 188 13 11 chr3 118448458 118449684 -99587474 + L1MA3 LINE L1 3579 4802 -1503 2089 117 7 3 chr3 118449684 118449993 -99587165 + AluY SINE Alu 1 310 -1 8407 188 13 11 chr3 118449993 118451484 -99585674 + L1MA3 LINE L1 4802 6299 -6 344 322 50 8 chr3 118452839 118452960 -99584198 + MIR3 SINE MIR 56 181 -27 186 255 20 0 chr3 118453239 118453290 -99583868 - MIR SINE MIR -50 212 161 1808 156 49 25 chr3 118453547 118453913 -99583245 + THE1C LTR MaLR 1 375 0 467 318 178 5 chr3 118454053 118454267 -99582891 - MIR SINE MIR -10 252 2 4316 179 22 4 chr3 118455149 118455916 -99581242 - LTR39 LTR ERV1 0 783 3 192 125 0 0 chr3 118455964 118455996 -99581162 + (TCCA)n Simple_repeat Simple_repeat 2 33 0 39 38 0 0 chr3 118456552 118456605 -99580553 + AT_rich Low_complexity Low_complexity 1 53 0 788 169 73 0 chr3 118457491 118457627 -99579531 + MSTD LTR MaLR 251 396 0 262 281 110 41 chr3 118458147 118458393 -99578765 - L1ME LINE L1 -558 5612 5350 24 32 0 0 chr3 118458499 118458530 -99578628 + AT_rich Low_complexity Low_complexity 1 31 0 340 169 39 0 chr3 118458532 118458662 -99578496 + (TA)n Simple_repeat Simple_repeat 1 135 0 1963 177 13 39 chr3 118460594 118460983 -99576175 - MLT1B LTR MaLR 0 390 12 183 431 0 0 chr3 118461004 118461076 -99576082 + L3 LINE CR1 1073 1144 -433 304 337 0 0 chr3 118461204 118461302 -99575856 - MER117 DNA MER1_type -94 103 6 276 269 78 60 chr3 118461471 118461638 -99575520 - MER20B DNA MER1_type -607 176 7 306 345 82 0 chr3 118461782 118462002 -99575156 + L1ME LINE L1 5575 5812 -309 186 43 0 0 chr3 118462119 118462142 -99575016 + (TA)n Simple_repeat Simple_repeat 2 24 0 273 313 236 37 chr3 118462289 118462535 -99574623 - L3 LINE CR1 -762 815 521 23 0 0 0 chr3 118462627 118462650 -99574508 + AT_rich Low_complexity Low_complexity 1 23 0 316 196 0 31 chr3 118462650 118462747 -99574411 + GA-rich Low_complexity Low_complexity 3 96 0 280 307 100 36 chr3 118463075 118463215 -99573943 + L2 LINE L2 3165 3313 0 414 265 71 18 chr3 118465726 118465896 -99571262 - L1MC5 LINE L1 -494 7467 7289 333 300 63 55 chr3 118465899 118466152 -99571006 - MARNA DNA Mariner -238 348 94 2478 247 63 36 chr3 118467563 118468372 -99568786 + L2 LINE L2 1944 2774 -540 265 303 25 25 chr3 118468387 118468509 -99568649 - L2 LINE L2 -464 2850 2729 231 182 0 0 chr3 118468515 118468559 -99568599 - L2 LINE L2 -163 3150 3107 306 75 0 0 chr3 118468584 118468624 -99568534 - MADE1 DNA Mariner -39 41 2 314 346 0 37 chr3 118468667 118468774 -99568384 - L2 LINE L2 -313 3000 2898 232 268 51 123 chr3 118469562 118469700 -99567458 + L2 LINE L2 3182 3309 -4 15038 180 90 19 chr3 118470105 118472056 -99565102 - L1MA3 LINE L1 0 7724 5912 1581 130 0 67 chr3 118472056 118472340 -99564818 - AluSx SINE Alu -8 304 40 15038 180 90 19 chr3 118472340 118477524 -99559634 - L1MA3 LINE L1 -1812 5912 65 242 143 0 114 chr3 118477524 118477594 -99559564 - U2 snRNA snRNA -44 144 83 265 229 0 0 chr3 118478104 118478174 -99558984 - L1MCc LINE L1 -4943 1480 1411 1232 284 135 32 chr3 118478275 118478810 -99558348 + MLT1E LTR MaLR 1 590 -3 22 35 0 0 chr3 118479915 118479944 -99557214 + AT_rich Low_complexity Low_complexity 1 29 0 195 42 0 0 chr3 118480218 118480242 -99556916 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 213 121 0 0 chr3 118481121 118481154 -99556004 + (TTTC)n Simple_repeat Simple_repeat 3 35 0 23 0 0 0 chr3 118481268 118481291 -99555867 + AT_rich Low_complexity Low_complexity 1 23 0 2008 175 91 30 chr3 118481831 118482293 -99554865 + LTR2B LTR ERV1 1 490 0 1510 274 73 36 chr3 118482666 118483283 -99553875 + L1ME LINE L1 513 1152 -5378 5149 273 80 47 chr3 118483382 118484428 -99552730 + L1ME LINE L1 1386 2396 -4144 2333 97 0 3 chr3 118484428 118484739 -99552419 - AluSg SINE Alu 0 310 1 5149 273 80 47 chr3 118484739 118487475 -99549683 + L1ME LINE L1 2396 5291 -1249 2627 144 43 105 chr3 118487658 118487888 -99549270 + LTR49 LTR ERV1 4 247 -348 3022 75 2 47 chr3 118487888 118488339 -99548819 + L1PA7 LINE L1 5711 6141 -13 2715 3 0 0 chr3 118488342 118488639 -99548519 + AluYa5 SINE Alu 1 297 -14 2627 144 43 105 chr3 118488639 118489035 -99548123 + LTR49 LTR ERV1 249 595 0 453 334 101 28 chr3 118489268 118489594 -99547564 - L2 LINE L2 -587 2727 2378 21 0 0 0 chr3 118490879 118490900 -99546258 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 118490994 118491016 -99546142 + AT_rich Low_complexity Low_complexity 1 22 0 188 339 58 45 chr3 118492149 118492373 -99544785 + L2 LINE L2 3070 3296 -17 191 395 92 8 chr3 118493001 118493120 -99544038 + L2 LINE L2 2932 3060 -212 304 320 188 17 chr3 118493678 118493859 -99543299 + MIR SINE MIR 51 262 0 22 0 0 0 chr3 118495569 118495591 -99541567 + AT_rich Low_complexity Low_complexity 1 22 0 1460 174 10 39 chr3 118495591 118495896 -99541262 - AluJb SINE Alu -3 309 14 4429 140 59 35 chr3 118495925 118496759 -99540399 - L1PA16 LINE L1 -11 6155 5302 625 173 9 0 chr3 118496759 118496869 -99540289 - AluSp/q SINE Alu -39 274 164 2015 184 19 2 chr3 118496874 118497293 -99539865 - L1 LINE L1 -1290 4856 4431 395 310 82 62 chr3 118498795 118498905 -99538253 - L3 LINE CR1 -3 1574 1468 852 215 45 0 chr3 118498905 118499105 -99538053 - MER3 DNA MER1_type 0 209 1 395 310 82 62 chr3 118499105 118499346 -99537812 - L3 LINE CR1 -109 1468 1216 224 250 0 0 chr3 118499544 118499596 -99537562 + L2 LINE L2 3221 3272 0 313 248 157 7 chr3 118499807 118499960 -99537198 - L1ME4a LINE L1 -177 5944 5769 1885 201 14 5 chr3 118499983 118500352 -99536806 + MLT1B LTR MaLR 1 372 -18 342 323 134 0 chr3 118500359 118500523 -99536635 - L1ME4a LINE L1 -382 5739 5554 305 312 79 45 chr3 118500746 118500937 -99536221 - L1MC4a LINE L1 -1914 5894 5690 1233 256 49 33 chr3 118500937 118501139 -99536019 - MSTD LTR MaLR 0 396 199 2039 112 35 0 chr3 118501139 118501425 -99535733 - AluSp SINE Alu -17 296 1 1233 256 49 33 chr3 118501425 118501612 -99535546 - MSTD LTR MaLR -197 199 1 305 312 79 45 chr3 118501612 118501686 -99535472 - L1MC4a LINE L1 -2118 5690 5620 679 308 56 24 chr3 118501704 118501954 -99535204 + MIR SINE MIR 1 258 -4 239 250 0 18 chr3 118501978 118502034 -99535124 - L1MC4a LINE L1 -581 5581 5527 389 319 56 6 chr3 118502087 118502247 -99534911 - L1ME3A LINE L1 -329 5841 5674 198 159 0 68 chr3 118503764 118503808 -99533350 + MIR3 SINE MIR 150 190 -18 562 270 49 12 chr3 118503834 118503997 -99533161 - MER5B DNA MER1_type -8 170 2 247 333 173 6 chr3 118505296 118505464 -99531694 - MIR SINE MIR 0 262 67 2358 174 12 7 chr3 118505952 118506365 -99530793 - MSTB LTR MaLR -11 415 1 8344 169 54 22 chr3 118506365 118506971 -99530187 - MSTB-int LTR MaLR 0 1651 1066 2332 97 8 75 chr3 118506971 118507373 -99529785 + THE1C LTR MaLR 1 375 0 9288 141 40 11 chr3 118507373 118508908 -99528250 + THE1C-int LTR MaLR 1 1580 0 2580 117 3 5 chr3 118508908 118509284 -99527874 + THE1C LTR MaLR 1 375 0 8344 169 54 22 chr3 118509284 118510013 -99527145 - MSTB-int LTR MaLR -585 1066 252 270 0 0 0 chr3 118510013 118510043 -99527115 + (TTG)n Simple_repeat Simple_repeat 1 30 0 8344 169 54 22 chr3 118510043 118510304 -99526854 - MSTB-int LTR MaLR -1399 252 1 1868 170 79 3 chr3 118510304 118510634 -99526524 - MSTB LTR MaLR 0 426 72 22 0 0 0 chr3 118511575 118511597 -99525561 + AT_rich Low_complexity Low_complexity 1 22 0 343 317 16 24 chr3 118511980 118512103 -99525055 + MIR SINE MIR 47 168 -94 182 212 0 0 chr3 118512102 118512135 -99525023 + L2 LINE L2 3261 3293 -20 * 23 54 0 0 chr3 118512396 118512433 -99524725 + AT_rich Low_complexity Low_complexity 1 37 0 628 195 17 0 chr3 118512753 118512871 -99524287 - MER58B DNA MER1_type 0 341 222 282 29 0 0 chr3 118512872 118512907 -99524251 + (CA)n Simple_repeat Simple_repeat 2 36 0 5468 151 6 12 chr3 118512969 118513878 -99523280 + MER4D LTR ERV1 1 903 0 596 281 77 64 chr3 118513901 118514510 -99522648 - L1M4c LINE L1 -4612 1951 1182 4558 264 89 19 chr3 118515493 118517329 -99519829 + L1ME1 LINE L1 2839 4804 -1342 * 12041 177 35 25 chr3 118517327 118517794 -99519364 + L1M4c LINE L1 24 485 -5897 2102 99 10 16 chr3 118517794 118517970 -99519188 - AluSq SINE Alu -3 310 135 2420 75 0 3 chr3 118517970 118518276 -99518882 - AluY SINE Alu -6 305 1 2102 99 10 16 chr3 118518276 118518411 -99518747 - AluSq SINE Alu -178 135 1 12041 177 35 25 chr3 118518411 118518616 -99518542 + L1M4c LINE L1 485 686 -5696 215 30 0 30 chr3 118518616 118518649 -99518509 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 12041 177 35 25 chr3 118518649 118520560 -99516598 + L1M4c LINE L1 686 2634 -3748 4874 180 28 6 chr3 118520564 118521842 -99515316 - L1MA7 LINE L1 0 6291 4985 6797 243 50 33 chr3 118521842 118522527 -99514631 + L1M4c LINE L1 2777 3449 -2933 821 136 0 0 chr3 118522527 118522645 -99514513 + FLAM_C SINE Alu 1 118 -15 6797 243 50 33 chr3 118522645 118524223 -99512935 + L1M4c LINE L1 3449 5077 -1305 587 225 69 6 chr3 118524227 118524400 -99512758 + L1M4c LINE L1 5398 5581 -801 * 2911 212 78 60 chr3 118524391 118525753 -99511405 + L1ME1 LINE L1 4785 6162 -4 721 289 34 54 chr3 118526350 118526700 -99510458 + L2 LINE L2 2968 3310 -3 233 286 105 53 chr3 118527716 118527887 -99509271 - MIR3 SINE MIR -12 196 17 1770 117 97 29 chr3 118528062 118528413 -99508745 + THE1C LTR MaLR 1 375 0 381 316 57 36 chr3 118528868 118529061 -99508097 + MIR SINE MIR 45 241 -21 357 117 0 0 chr3 118529316 118529376 -99507782 + (TC)n Simple_repeat Simple_repeat 1 60 0 189 107 0 0 chr3 118529377 118529405 -99507753 + (CA)n Simple_repeat Simple_repeat 1 28 0 629 286 95 23 chr3 118529870 118530301 -99506857 + LTR33A LTR ERVL 21 523 0 2151 114 13 0 chr3 118530705 118531004 -99506154 + AluSp SINE Alu 2 304 -9 1765 145 0 30 chr3 118531105 118531401 -99505757 - AluJo SINE Alu -14 298 12 24 0 0 0 chr3 118531614 118531638 -99505520 + AT_rich Low_complexity Low_complexity 1 24 0 2177 80 43 7 chr3 118532026 118532326 -99504832 + AluYa5 SINE Alu 1 311 0 314 291 84 134 chr3 118533408 118533707 -99503451 - L2 LINE L2 -2 3270 2987 187 296 53 53 chr3 118533776 118533908 -99503250 - L2 LINE L2 -11 3302 3171 1832 190 49 65 chr3 118534201 118534674 -99502484 + MLT1C LTR MaLR 3 467 0 23 0 0 0 chr3 118534967 118534990 -99502168 + AT_rich Low_complexity Low_complexity 1 23 0 28 79 0 0 chr3 118535083 118535146 -99502012 + AT_rich Low_complexity Low_complexity 1 63 0 976 256 169 35 chr3 118535202 118535911 -99501247 + L2 LINE L2 2510 3307 -6 465 252 49 0 chr3 118535915 118536038 -99501120 + L1ME LINE L1 5689 5817 -304 2178 129 7 0 chr3 118536618 118536928 -99500230 + AluSx SINE Alu 1 312 0 426 53 0 0 chr3 118536928 118536985 -99500173 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 181 79 0 53 chr3 118537529 118537567 -99499591 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 267 257 14 0 chr3 118537576 118537646 -99499512 + GA-rich Low_complexity Low_complexity 4 74 0 * 302 227 0 82 chr3 118537594 118537788 -99499370 + A-rich Low_complexity Low_complexity 2 179 0 1121 258 33 19 chr3 118538036 118538400 -99498758 + MER93b LTR ERV1 2 370 -3 33 25 0 0 chr3 118538495 118538535 -99498623 + AT_rich Low_complexity Low_complexity 1 40 0 515 193 25 8 chr3 118538578 118538697 -99498461 + L1MB4 LINE L1 6054 6174 -6 23 0 0 0 chr3 118538697 118538720 -99498438 + AT_rich Low_complexity Low_complexity 1 23 0 535 311 15 5 chr3 118539893 118540089 -99497069 - Charlie8 DNA MER1_type -2217 200 3 1249 183 112 62 chr3 118540668 118541024 -99496134 + MLT1A2 LTR MaLR 1 374 0 727 221 28 37 chr3 118541380 118541597 -99495561 + LTR12 LTR ERV1 238 452 -262 1732 199 14 14 chr3 118541707 118542059 -99495099 + MLT1A1 LTR MaLR 10 361 -4 333 339 15 0 chr3 118542211 118542341 -99494817 + MIR SINE MIR 20 151 -111 2982 111 53 30 chr3 118542342 118542966 -99494192 + LTR8A LTR ERV1 1 727 0 23 0 0 0 chr3 118543214 118543237 -99493921 + AT_rich Low_complexity Low_complexity 1 23 0 4289 72 2 7 chr3 118543447 118544004 -99493154 - MER41A LTR ERV1 0 554 1 2387 64 0 0 chr3 118544091 118544403 -99492755 + AluY SINE Alu 1 312 0 1362 244 145 38 chr3 118544482 118544543 -99492615 - L1MEc LINE L1 -5668 728 675 641 275 35 0 chr3 118544543 118544714 -99492444 + MER45A DNA AcHobo 1 177 -1 1362 244 145 38 chr3 118544714 118545278 -99491880 - L1MEc LINE L1 -5721 675 36 815 257 63 68 chr3 118545282 118545679 -99491479 + L1ME3A LINE L1 5706 6100 -70 402 21 0 0 chr3 118546326 118546373 -99490785 + (CA)n Simple_repeat Simple_repeat 2 48 0 262 78 20 20 chr3 118546449 118546500 -99490658 + (TTTTA)n Simple_repeat Simple_repeat 1 51 0 40704 34 23 3 chr3 118546500 118552512 -99484646 - L1PA3 LINE L1 -24 6131 1 204 353 81 34 chr3 118552627 118552802 -99484356 + MIR SINE MIR 9 192 -63 225 240 60 0 chr3 118552852 118552902 -99484256 - MIR SINE MIR -81 127 75 362 71 54 0 chr3 118554701 118554757 -99482401 + tRNA-Gln-CAG tRNA tRNA 1 59 -16 2249 217 83 40 chr3 118555792 118556419 -99480739 + MLT1E1 LTR MaLR 1 654 0 2978 129 17 22 chr3 118557350 118557940 -99479218 - L1P LINE L1 -4607 1539 953 254 394 0 10 chr3 118608670 118608774 -99428384 + L2 LINE L2 3150 3252 -20 303 177 0 0 chr3 118609015 118609077 -99428081 + (TA)n Simple_repeat Simple_repeat 1 62 0 216 0 0 0 chr3 118609654 118609678 -99427480 + (A)n Simple_repeat Simple_repeat 1 24 0 28 29 0 0 chr3 118609743 118609778 -99427380 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr3 118609807 118609831 -99427327 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr3 118610507 118610545 -99426613 + AT_rich Low_complexity Low_complexity 1 38 0 5282 134 26 9 chr3 118610758 118611638 -99425520 - L1PB4 LINE L1 -8 6148 5254 1519 193 22 14 chr3 118611635 118611998 -99425160 - L1PB4 LINE L1 -1507 4639 4274 * 1466 223 13 20 chr3 118612261 118612562 -99424596 - MLT1D LTR MaLR -2 503 205 277 330 75 0 chr3 118612627 118612721 -99424437 - L2 LINE L2 -11 3302 3202 318 133 50 0 chr3 118613170 118613230 -99423928 - L1MB1 LINE L1 -3 6165 6103 2321 157 47 33 chr3 118613230 118613658 -99423500 - Tigger2a DNA MER2_type 0 434 1 685 159 182 18 chr3 118613664 118613834 -99423324 - MLT1D LTR MaLR -307 198 1 593 267 146 26 chr3 118614274 118614686 -99422472 - L1ME4a LINE L1 -43 6078 5609 10018 157 19 58 chr3 118614887 118616214 -99420944 - L1MA3 LINE L1 0 7724 6347 2030 124 0 0 chr3 118616214 118616530 -99420628 - AluSg SINE Alu 0 316 1 10018 157 19 58 chr3 118616530 118617163 -99419995 - L1MA3 LINE L1 -1377 6347 5691 1543 212 3 16 chr3 118617163 118617474 -99419684 - AluJo SINE Alu -5 307 1 10018 157 19 58 chr3 118617474 118617746 -99419412 - L1MA3 LINE L1 -2033 5691 5410 2301 118 28 8 chr3 118617746 118618103 -99419055 - THE1B LTR MaLR 0 364 1 8911 111 79 43 chr3 118618103 118619629 -99417529 - THE1B-int LTR MaLR 0 1580 1 2532 113 6 6 chr3 118619629 118619993 -99417165 - THE1B LTR MaLR 0 364 1 10018 157 19 58 chr3 118619993 118621251 -99415907 - L1MA3 LINE L1 -2311 5413 4370 267 245 0 0 chr3 118621233 118621286 -99415872 - L1MA3 LINE L1 -3478 4087 4035 * 11317 120 38 16 chr3 118621268 118623154 -99414004 - L1MA3 LINE L1 -4043 3522 1595 520 152 0 0 chr3 118623147 118623226 -99413932 - L1MA3 LINE L1 -6392 1173 1095 * 258 396 86 0 chr3 118623229 118623368 -99413790 + L2 LINE L2 3117 3267 -5 1775 135 38 28 chr3 118624742 118625031 -99412127 - AluSx SINE Alu -18 294 3 374 247 141 65 chr3 118625720 118625890 -99411268 + MER5A DNA MER1_type 4 186 -3 2265 88 0 7 chr3 118627571 118627868 -99409290 - AluSq SINE Alu -18 295 1 554 323 68 0 chr3 118627913 118628105 -99409053 - MIR SINE MIR -56 206 2 210 71 0 0 chr3 118628411 118628439 -99408719 + (A)n Simple_repeat Simple_repeat 1 28 0 374 311 79 6 chr3 118629925 118630089 -99407069 + MIR SINE MIR 87 262 0 2044 133 0 13 chr3 118630268 118630576 -99406582 - AluSx SINE Alu -8 304 1 21 36 0 0 chr3 118631706 118631734 -99405424 + AT_rich Low_complexity Low_complexity 1 28 0 186 208 0 0 chr3 118632038 118632086 -99405072 + T-rich Low_complexity Low_complexity 5 52 0 192 40 0 0 chr3 118632130 118632155 -99405003 + (TG)n Simple_repeat Simple_repeat 1 25 0 408 289 35 9 chr3 118632501 118632615 -99404543 - L2 LINE L2 0 3313 3197 21 57 0 0 chr3 118632860 118632895 -99404263 + AT_rich Low_complexity Low_complexity 1 35 0 1576 155 94 0 chr3 118632952 118633217 -99403941 + AluSx SINE Alu 1 290 -22 225 268 56 0 chr3 118633249 118633320 -99403838 + L1ME1 LINE L1 1921 1995 -4401 674 270 85 23 chr3 118633341 118633730 -99403428 - L1MDa LINE L1 -4120 2420 2008 * 752 282 44 65 chr3 118633702 118634135 -99403023 - L1MDa LINE L1 -5197 1346 923 426 125 11 45 chr3 118634162 118634250 -99402908 + MER53 DNA DNA 93 177 -12 408 162 10 50 chr3 118634174 118634273 -99402885 - MER53 DNA DNA -94 95 1 * 270 307 50 33 chr3 118635043 118635284 -99401874 + L1ME1 LINE L1 2024 2268 -4128 184 130 43 0 chr3 118635723 118635769 -99401389 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 330 323 54 30 chr3 118635786 118635953 -99401205 - MIR SINE MIR -89 173 3 1880 79 23 8 chr3 118637174 118637439 -99399719 + L1PA11 LINE L1 5906 6174 0 322 302 171 32 chr3 118637804 118638148 -99399010 + L1ME4a LINE L1 5643 6034 -87 1264 247 31 19 chr3 118638193 118638513 -99398645 + MLT1E3 LTR MaLR 301 624 0 231 271 0 51 chr3 118639254 118639313 -99397845 + L2 LINE L2 3124 3179 -93 558 323 44 32 chr3 118640194 118640442 -99396716 - MIR SINE MIR 0 262 12 433 331 26 10 chr3 118640457 118640611 -99396547 - MIR SINE MIR -65 143 12 25 0 0 0 chr3 118640626 118640651 -99396507 + AT_rich Low_complexity Low_complexity 1 25 0 507 240 52 13 chr3 118640696 118640850 -99396308 + MIR SINE MIR 71 230 -32 269 236 28 39 chr3 118640920 118641102 -99396056 + (TA)n Simple_repeat Simple_repeat 1 180 0 291 237 0 25 chr3 118641124 118641242 -99395916 + (TA)n Simple_repeat Simple_repeat 1 115 0 4513 265 94 21 chr3 118641373 118642773 -99394385 + L1ME1 LINE L1 2579 3875 -2360 351 0 0 0 chr3 118642773 118642812 -99394346 + (CA)n Simple_repeat Simple_repeat 2 40 0 4513 265 94 21 chr3 118642812 118643287 -99393871 + L1ME1 LINE L1 3875 4314 -1921 2129 128 0 7 chr3 118643287 118643585 -99393573 + AluSx SINE Alu 1 296 -16 4513 265 94 21 chr3 118643585 118645032 -99392126 + L1ME1 LINE L1 4314 6214 -21 367 228 62 62 chr3 118645157 118645302 -99391856 + L1ME4a LINE L1 5976 6120 -1 423 370 40 46 chr3 118645333 118645854 -99391304 + L2 LINE L2 2289 2806 -508 205 195 0 0 chr3 118645873 118645914 -99391244 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 31 88 0 0 chr3 118647139 118647219 -99389939 + AT_rich Low_complexity Low_complexity 1 80 0 397 187 28 37 chr3 118647353 118647460 -99389698 - L1MEc LINE L1 -4281 2115 2010 1286 276 138 18 chr3 118647501 118648272 -99388886 - L1MEc LINE L1 -4460 1936 1074 1790 168 62 19 chr3 118648272 118648641 -99388517 + MLT1B LTR MaLR 1 385 -5 2756 266 43 26 chr3 118648661 118649657 -99387501 - L1MEc LINE L1 -5349 1047 35 230 312 96 32 chr3 118649706 118650142 -99387016 - L1MC/D LINE L1 -2002 5806 5343 24 53 0 0 chr3 118650366 118650404 -99386754 + AT_rich Low_complexity Low_complexity 1 38 0 22 56 0 0 chr3 118650809 118650845 -99386313 + AT_rich Low_complexity Low_complexity 1 36 0 473 287 141 37 chr3 118650980 118651384 -99385774 - MLT1J1 LTR MaLR 0 446 1 1754 266 21 19 chr3 118651530 118652098 -99385060 - L1ME2 LINE L1 -9 6155 5587 987 178 12 66 chr3 118652100 118652341 -99384817 - L1MB8 LINE L1 -14 6164 5937 14666 103 10 5 chr3 118652341 118655280 -99381878 - L1PA7 LINE L1 0 6154 3201 13605 140 16 25 chr3 118655380 118657801 -99379357 - L1PA7 LINE L1 -3142 3004 604 2545 234 39 7 chr3 118657808 118658563 -99378595 - L1ME1 LINE L1 -229 5937 5162 3977 153 30 11 chr3 118658564 118659064 -99378094 - L1MA9 LINE L1 0 6312 5790 210 37 0 0 chr3 118659064 118659091 -99378067 + (TG)n Simple_repeat Simple_repeat 2 28 0 3977 153 30 11 chr3 118659091 118659349 -99377809 - L1MA9 LINE L1 -522 5790 5539 834 211 16 5 chr3 118659350 118659544 -99377614 - L1MA9 LINE L1 -1553 4593 4398 3471 199 4 6 chr3 118659557 118660249 -99376909 + L1 LINE L1 3367 4057 -2089 515 114 0 0 chr3 118660623 118660702 -99376456 + L1MA5A LINE L1 6215 6293 -4 450 189 39 7 chr3 118660777 118660894 -99376264 + L1MD3 LINE L1 7520 7827 -150 448 240 140 20 chr3 118661311 118661461 -99375697 + MER5B DNA MER1_type 4 171 -7 404 331 15 8 chr3 118661712 118661845 -99375313 + MIR SINE MIR 20 153 -109 4742 109 0 4 chr3 118664289 118664994 -99372164 - L1PA7 LINE L1 -2251 3895 3194 10278 92 13 0 chr3 118664994 118667247 -99369911 + L1PA7 LINE L1 3904 6164 0 469 311 72 0 chr3 118667652 118667845 -99369313 - MIR SINE MIR -17 245 39 1144 282 33 11 chr3 118668325 118668687 -99368471 + MLT1I LTR MaLR 1 370 -39 1039 215 23 14 chr3 118668868 118669082 -99368076 + MER58A DNA MER1_type 1 216 -8 229 360 159 34 chr3 118670075 118670483 -99366675 + L2 LINE L2 1774 2232 -1082 297 224 10 122 chr3 118671019 118671117 -99366041 - L2 LINE L2 -1 3312 3226 1252 293 129 27 chr3 118671141 118671930 -99365228 - L2 LINE L2 0 3313 2440 1822 118 8 0 chr3 118672037 118672300 -99364858 + AluSg SINE Alu 32 296 -14 1431 281 120 23 chr3 118672306 118673074 -99364084 - L1MEc LINE L1 -4387 2009 1168 243 0 0 0 chr3 118673146 118673173 -99363985 + (TA)n Simple_repeat Simple_repeat 1 27 0 463 300 0 8 chr3 118673594 118673714 -99363444 - MIR SINE MIR -116 146 28 635 105 11 0 chr3 118673756 118673851 -99363307 + HY3 scRNA scRNA 2 97 -4 296 146 0 0 chr3 118673851 118673899 -99363259 + (A)n Simple_repeat Simple_repeat 1 48 0 420 194 165 0 chr3 118674196 118674299 -99362859 + Charlie5 DNA MER1_type 5 124 -2488 1364 180 33 41 chr3 118674299 118674410 -99362748 + Charlie5 DNA MER1_type 2234 2344 -280 2104 107 3 7 chr3 118674410 118674709 -99362449 + AluSx SINE Alu 1 298 -14 1364 180 33 41 chr3 118674709 118674986 -99362172 + Charlie5 DNA MER1_type 2344 2619 -5 182 184 0 26 chr3 118675003 118675041 -99362117 + L2 LINE L2 3267 3303 -10 238 309 73 16 chr3 118675052 118675175 -99361983 - L2 LINE L2 -492 2822 2693 238 243 43 14 chr3 118675570 118675640 -99361518 + L2 LINE L2 2669 2740 -574 245 217 0 0 chr3 118675752 118675798 -99361360 - MLT1K LTR MaLR -8 580 535 694 287 84 0 chr3 118676059 118676261 -99360897 - MIR SINE MIR -20 242 24 286 191 44 118 chr3 118676271 118676407 -99360751 - MLT1K LTR MaLR -383 205 80 1890 145 11 34 chr3 118676733 118677084 -99360074 + MER61A LTR ERV1 1 343 0 288 365 31 25 chr3 118677390 118677549 -99359609 + L2 LINE L2 3112 3271 -1 207 265 44 0 chr3 118677549 118677617 -99359541 + GA-rich Low_complexity Low_complexity 4 74 0 21 57 0 0 chr3 118677701 118677736 -99359422 + AT_rich Low_complexity Low_complexity 1 35 0 559 270 80 53 chr3 118678324 118678550 -99358608 + MIR SINE MIR 10 241 -21 1460 130 8 32 chr3 118680308 118680555 -99356603 + THE1B LTR MaLR 77 317 -47 324 250 0 0 chr3 118680566 118680642 -99356516 - MER58A DNA MER1_type -30 77 2 24 0 0 0 chr3 118681646 118681670 -99355488 + AT_rich Low_complexity Low_complexity 1 24 0 8638 140 12 20 chr3 118681695 118683134 -99354024 - Tigger1 DNA MER2_type -7 2411 985 4697 127 7 69 chr3 118683128 118683424 -99353734 - Tigger1 DNA MER2_type -1602 816 503 * 1362 190 102 3 chr3 118683424 118683708 -99353450 - AluJo SINE Alu 0 312 1 4697 127 7 69 chr3 118683708 118683783 -99353375 - Tigger1 DNA MER2_type -1915 503 425 2276 59 0 46 chr3 118683783 118684090 -99353068 + AluY SINE Alu 4 296 -15 4697 127 7 69 chr3 118684090 118684463 -99352695 - Tigger1 DNA MER2_type -1993 425 126 2733 13 0 0 chr3 118684463 118684768 -99352390 + AluY SINE Alu 1 305 -6 4697 127 7 69 chr3 118684768 118684864 -99352294 - Tigger1 DNA MER2_type -2292 126 26 384 299 181 18 chr3 118684896 118685117 -99352041 + MIR SINE MIR 2 258 -4 23 54 0 0 chr3 118685117 118685154 -99352004 + AT_rich Low_complexity Low_complexity 1 37 0 1510 220 81 38 chr3 118686797 118687243 -99349915 + MLT1C LTR MaLR 3 467 0 873 321 108 24 chr3 118687519 118687983 -99349175 + L2 LINE L2 2127 2629 -685 30 0 0 24 chr3 118688018 118688033 -99349125 + AT_rich Low_complexity Low_complexity 1 15 -25 2608 3 0 0 chr3 118688033 118688317 -99348841 - AluYa8 SINE Alu -8 302 19 30 0 0 24 chr3 118688317 118688342 -99348816 + AT_rich Low_complexity Low_complexity 15 40 0 21 0 0 0 chr3 118689170 118689191 -99347967 + AT_rich Low_complexity Low_complexity 1 21 0 244 333 26 9 chr3 118690489 118690603 -99346555 + L2 LINE L2 2365 2480 -834 238 235 25 0 chr3 118690801 118690882 -99346276 + (TA)n Simple_repeat Simple_repeat 1 83 0 959 258 28 4 chr3 118690972 118691224 -99345934 + MIR SINE MIR 5 262 0 205 87 22 22 chr3 118691529 118691575 -99345583 + (TTTTA)n Simple_repeat Simple_repeat 1 46 0 184 216 0 0 chr3 118691756 118691793 -99345365 + MIR SINE MIR 215 251 -11 8728 176 38 7 chr3 118691795 118691937 -99345221 + L1PA13 LINE L1 3529 3665 -2498 333 47 0 0 chr3 118691937 118691980 -99345178 + (CA)n Simple_repeat Simple_repeat 2 44 0 8728 176 38 7 chr3 118691980 118693899 -99343259 + L1PA13 LINE L1 3665 5683 -480 180 0 0 0 chr3 118693899 118693919 -99343239 + (TA)n Simple_repeat Simple_repeat 1 20 0 8728 176 38 7 chr3 118693919 118694413 -99342745 + L1PA13 LINE L1 5683 6160 -3 205 296 162 37 chr3 118694605 118694821 -99342337 - MIR SINE MIR -17 245 3 288 346 0 52 chr3 118695384 118695520 -99341638 + MIR3 SINE MIR 5 133 -75 1831 134 51 48 chr3 118695936 118696272 -99340886 + MER1B DNA MER1_type 1 337 0 181 287 174 17 chr3 118697626 118697741 -99339417 - MER5A DNA MER1_type -24 165 33 * 304 259 194 9 chr3 118697645 118697753 -99339405 + MER5A DNA MER1_type 54 181 -8 457 321 135 25 chr3 118698546 118698873 -99338285 - L3 LINE CR1 -72 1505 1143 2542 142 166 6 chr3 118698987 118699486 -99337672 + LTR49 LTR ERV1 17 595 0 570 335 51 20 chr3 118699488 118699781 -99337377 - L3 LINE CR1 -589 988 687 199 349 95 12 chr3 118702178 118702347 -99334811 - L2 LINE L2 -1 3271 3089 495 280 126 6 chr3 118702408 118702590 -99334568 + MIR SINE MIR 53 256 -6 1574 205 54 42 chr3 118703155 118703479 -99333679 + Charlie1b DNA MER1_type 37 370 -2391 4183 106 35 5 chr3 118703479 118704103 -99333055 + LTR9B LTR ERV1 1 643 -1 1574 205 54 42 chr3 118704103 118704257 -99332901 + Charlie1b DNA MER1_type 370 521 -2 882 255 0 0 chr3 118704654 118704842 -99332316 - MER58A DNA MER1_type 0 224 37 22 0 0 0 chr3 118705032 118705054 -99332104 + AT_rich Low_complexity Low_complexity 1 22 0 2683 165 2 0 chr3 118705242 118705655 -99331503 - L1PA12 LINE L1 -7167 414 1 11440 171 26 33 chr3 118705657 118709222 -99327936 - L1MA8 LINE L1 0 7312 3782 1040 246 78 55 chr3 118709222 118709568 -99327590 - MSTD LTR MaLR -42 354 1 2501 207 16 42 chr3 118709568 118710325 -99326833 - L1MA8 LINE L1 -3407 3760 3016 1526 189 28 7 chr3 118710325 118710610 -99326548 + AluJo SINE Alu 1 291 -21 2501 207 16 42 chr3 118710610 118710680 -99326478 - L1MA8 LINE L1 -4151 3016 2946 5984 133 10 5 chr3 118710687 118711926 -99325232 + L1PB2 LINE L1 4902 6144 -7 2218 263 48 74 chr3 118711940 118713638 -99323520 - L1MA8 LINE L1 -4161 3007 1587 334 265 65 40 chr3 118714527 118714844 -99322314 - L1ME LINE L1 -5317 753 432 360 288 46 121 chr3 118714912 118715343 -99321815 - L1ME LINE L1 -5671 399 1 196 347 83 0 chr3 118715495 118715567 -99321591 - L2 LINE L2 -40 3273 3196 7497 128 14 0 chr3 118715663 118716761 -99320397 + L1P LINE L1 3 1115 -5031 219 394 44 29 chr3 118717759 118717896 -99319262 - L2 LINE L2 0 3272 3134 528 271 79 39 chr3 118718541 118718788 -99318370 + L2 LINE L2 2760 3015 -257 261 0 0 0 chr3 118718794 118718823 -99318335 + (TG)n Simple_repeat Simple_repeat 2 30 0 329 254 97 44 chr3 118718839 118718953 -99318205 + L2 LINE L2 3186 3305 -8 21 0 0 0 chr3 118719556 118719577 -99317581 + AT_rich Low_complexity Low_complexity 1 21 0 337 322 29 53 chr3 118719617 118719732 -99317426 - MIR SINE MIR -11 251 142 180 0 0 0 chr3 118719732 118719752 -99317406 + (TTG)n Simple_repeat Simple_repeat 2 21 0 337 322 29 53 chr3 118719752 118719844 -99317314 - MIR SINE MIR -120 142 49 28 29 0 0 chr3 118721252 118721287 -99315871 + AT_rich Low_complexity Low_complexity 1 35 0 293 355 80 22 chr3 118722142 118722280 -99314878 + L2 LINE L2 3102 3247 -25 2387 92 3 0 chr3 118724702 118725006 -99312152 + AluSq SINE Alu 1 305 -8 22 35 0 0 chr3 118725230 118725259 -99311899 + AT_rich Low_complexity Low_complexity 1 29 0 439 358 70 52 chr3 118725559 118725807 -99311351 - L2 LINE L2 -1 3271 3012 326 291 64 29 chr3 118725807 118725979 -99311179 - MER5B DNA MER1_type 0 178 1 439 358 70 52 chr3 118725979 118726115 -99311043 - L2 LINE L2 -260 3012 2880 187 333 108 9 chr3 118726150 118726261 -99310897 - L2 LINE L2 -512 2802 2681 699 307 142 15 chr3 118726289 118726690 -99310468 - L2 LINE L2 -706 2608 2157 684 278 17 11 chr3 118726746 118726926 -99310232 - MER5A DNA MER1_type 0 189 9 2320 71 0 29 chr3 118727384 118727694 -99309464 - AluY SINE Alu -10 301 1 263 210 0 0 chr3 118729061 118729123 -99308035 - L1MC4 LINE L1 -1327 6715 6654 445 162 0 0 chr3 118729169 118729237 -99307921 - LTR16B LTR ERVL 0 464 397 479 297 96 44 chr3 118729377 118729606 -99307552 - MIR SINE MIR -4 258 18 1650 197 0 17 chr3 118731240 118731540 -99305618 + AluJo SINE Alu 1 295 -17 359 248 116 0 chr3 118731730 118731851 -99305307 + MER103 DNA DNA 31 165 -1 5615 135 10 10 chr3 118731962 118733857 -99303301 - L1PA15 LINE L1 -3 6865 4973 9262 250 25 26 chr3 118733864 118735533 -99301625 - L1PA15 LINE L1 -1969 4880 3170 228 136 136 15 chr3 118735533 118735599 -99301559 + LTR66 LTR ERVL 366 439 -171 9262 250 25 26 chr3 118735599 118736975 -99300183 - L1PA15 LINE L1 -3679 3170 1794 584 281 28 0 chr3 118738403 118738581 -99298577 - MLT1L LTR MaLR 0 615 433 231 330 35 17 chr3 118738670 118738785 -99298373 - MLT1L LTR MaLR -306 309 193 404 248 17 43 chr3 118740678 118740795 -99296363 - L2 LINE L2 -1 3312 3199 579 175 22 26 chr3 118741118 118741278 -99295880 - LTR21B LTR ERV1 0 438 308 2245 148 50 0 chr3 118741995 118742379 -99294779 + MER57A LTR ERV1 1 403 0 1152 162 0 11 chr3 118742478 118742669 -99294489 - MER5A DNA MER1_type 0 189 1 334 269 51 122 chr3 118742677 118742833 -99294325 - MER5B DNA MER1_type 0 178 45 3522 189 92 32 chr3 118742835 118743470 -99293688 + L1MD2 LINE L1 5446 6149 -210 3789 130 48 5 chr3 118743470 118744079 -99293079 + MER41B LTR ERV1 1 635 0 3522 189 92 32 chr3 118744079 118744290 -99292868 + L1MD2 LINE L1 6149 6346 -13 630 248 30 22 chr3 118744445 118744655 -99292503 + L1ME LINE L1 5523 5683 -438 28 0 0 0 chr3 118745397 118745425 -99291733 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 118746834 118746856 -99290302 + AT_rich Low_complexity Low_complexity 1 22 0 2411 165 23 6 chr3 118746921 118747593 -99289565 - L1M2 LINE L1 -651 5661 4974 21 36 0 0 chr3 118747737 118747765 -99289393 + AT_rich Low_complexity Low_complexity 1 28 0 3033 208 22 8 chr3 118747992 118748661 -99288497 - L1M2 LINE L1 -1139 5007 4329 2490 210 63 14 chr3 118748671 118749291 -99287867 + L1MA9 LINE L1 5625 6274 -38 568 205 17 0 chr3 118749478 118749595 -99287563 - MIR SINE MIR -57 205 87 2009 147 31 101 chr3 118750101 118750555 -99286603 + MLT1C LTR MaLR 5 426 -41 1840 206 32 0 chr3 118750555 118751010 -99286148 - MLT2B1 LTR ERVL 0 520 1 284 73 0 24 chr3 118751014 118751055 -99286103 + MLT1B LTR MaLR 349 388 -2 458 234 204 6 chr3 118751565 118751732 -99285426 - MIR SINE MIR 0 262 63 2760 187 41 7 chr3 118752451 118752991 -99284167 - MER74A LTR ERVL 0 558 1 25 31 0 0 chr3 118753021 118753053 -99284105 + AT_rich Low_complexity Low_complexity 1 32 0 617 128 184 0 chr3 118753053 118753178 -99283980 - L1PA15 LINE L1 -1 6164 6017 280 177 101 0 chr3 118753200 118753266 -99283892 - FRAM SINE Alu -25 141 71 361 240 0 9 chr3 118753323 118753483 -99283675 + Zaphod DNA AcHobo 3264 3460 -571 196 185 62 62 chr3 118754475 118754556 -99282602 + MIR SINE MIR 124 204 -58 249 215 0 51 chr3 118755331 118755410 -99281748 + (CATATA)n Simple_repeat Simple_repeat 2 76 0 296 333 163 0 chr3 118757419 118757566 -99279592 - MIR SINE MIR -70 192 22 21 0 0 0 chr3 118757704 118757725 -99279433 + AT_rich Low_complexity Low_complexity 1 21 0 549 360 109 36 chr3 118758965 118759929 -99277229 + L2 LINE L2 2226 3257 -15 356 291 36 9 chr3 118760042 118760152 -99277006 + MER94 DNA DNA 21 133 -1 497 250 0 64 chr3 118760227 118760383 -99276775 - Charlie8 DNA MER1_type -2189 228 83 273 285 47 3 chr3 118761187 118761293 -99275865 - MIR SINE MIR -24 184 73 201 381 141 12 chr3 118761860 118762109 -99275049 + L2 LINE L2 2446 2726 -588 310 352 48 0 chr3 118762190 118762400 -99274758 + L1ME LINE L1 5608 5827 -294 345 243 100 146 chr3 118762463 118762874 -99274284 + L1ME LINE L1 522 913 -5617 465 283 45 66 chr3 118763202 118763732 -99273426 + L1ME LINE L1 1032 1550 -4993 1063 257 29 6 chr3 118763829 118764172 -99272986 + L1ME LINE L1 1782 2132 -4408 2165 113 56 6 chr3 118764180 118765224 -99271934 - L1MA2 LINE L1 -10 6294 5149 511 256 47 103 chr3 118765232 118765710 -99271448 + L1ME LINE L1 2117 2608 -4043 2209 82 4 0 chr3 118765710 118766013 -99271145 - AluSp SINE Alu 0 308 5 511 256 47 103 chr3 118766013 118766092 -99271066 + L1ME LINE L1 2608 2690 -3961 2504 11 0 0 chr3 118766104 118766377 -99270781 + AluYa5 SINE Alu 11 283 -28 21 36 0 0 chr3 118767079 118767107 -99270051 + AT_rich Low_complexity Low_complexity 1 28 0 559 250 32 0 chr3 118767347 118767503 -99269655 + L2 LINE L2 2002 2162 -1152 2800 159 9 15 chr3 118767528 118767992 -99269166 + MLT1C LTR MaLR 6 466 -1 2036 277 29 13 chr3 118767993 118768606 -99268552 + L2 LINE L2 2175 2797 -517 378 264 55 0 chr3 118768728 118768819 -99268339 + MIR3 SINE MIR 106 201 -7 24 32 0 0 chr3 118773508 118773539 -99263619 + AT_rich Low_complexity Low_complexity 1 31 0 321 190 127 25 chr3 118773904 118773983 -99263175 - MIR3 SINE MIR -3 205 119 1983 97 0 4 chr3 118774486 118774765 -99262393 - Tigger2 DNA MER2_type -99 2619 2342 9043 74 105 6 chr3 118774866 118776212 -99260946 - L1P LINE L1 -4667 1479 1 484 165 0 0 chr3 118776217 118776302 -99260856 - L1PA5 LINE L1 -9 6145 6061 289 391 23 23 chr3 118776475 118776608 -99260550 + MER91A DNA MER1_type 31 163 -33 894 211 11 6 chr3 118777015 118777190 -99259968 - MER5A DNA MER1_type 0 189 14 200 125 0 25 chr3 118777218 118777258 -99259900 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 22298 54 47 3 chr3 118777895 118780830 -99256328 + L1P LINE L1 2 3063 -3083 1181 67 0 0 chr3 118780930 118781079 -99256079 + AluY SINE Alu 142 290 -21 2448 62 0 3 chr3 118781079 118781384 -99255774 + AluY SINE Alu 1 304 -7 411 271 78 13 chr3 118781731 118781919 -99255239 - MIR SINE MIR -27 235 36 21 71 0 0 chr3 118782090 118782132 -99255026 + AT_rich Low_complexity Low_complexity 1 42 0 388 298 58 0 chr3 118783716 118783820 -99253338 + MIR3 SINE MIR 59 168 -40 253 273 0 15 chr3 118785091 118785157 -99252001 - MLT1I LTR MaLR 0 409 345 369 250 23 70 chr3 118785215 118785343 -99251815 - MLT1I LTR MaLR -172 237 116 224 206 62 158 chr3 118785720 118785743 -99251415 + MIR SINE MIR 124 148 -114 2372 158 11 38 chr3 118785743 118786187 -99250971 + Tigger2a DNA MER2_type 2 433 -1 224 206 62 158 chr3 118786187 118786201 -99250957 + MIR SINE MIR 148 162 -100 1616 179 21 61 chr3 118786201 118786580 -99250578 - MLT1A1 LTR MaLR 0 365 2 224 206 62 158 chr3 118786580 118786614 -99250544 + MIR SINE MIR 162 198 -64 252 0 0 0 chr3 118786614 118786642 -99250516 + (TTG)n Simple_repeat Simple_repeat 3 30 0 2051 103 3 35 chr3 118786642 118786932 -99250226 - AluSp SINE Alu -32 281 1 224 206 62 158 chr3 118786932 118787003 -99250155 + MIR SINE MIR 196 255 -7 1714 188 16 38 chr3 118788001 118788478 -99248680 - MLT2B2 LTR ERVL 0 515 1 472 328 11 11 chr3 118788718 118788892 -99248266 + L3 LINE CR1 631 804 -773 188 310 133 26 chr3 118788914 118789027 -99248131 - L2 LINE L2 -1 3271 3147 275 307 23 11 chr3 118789034 118789122 -99248036 - MIR SINE MIR -55 153 65 424 259 98 0 chr3 118790391 118790503 -99246655 + MER94 DNA DNA 12 134 0 509 338 102 52 chr3 118790515 118790620 -99246538 + L3 LINE CR1 1129 1227 -350 273 75 0 0 chr3 118790620 118790660 -99246498 + (TG)n Simple_repeat Simple_repeat 1 40 0 509 338 102 52 chr3 118790660 118790956 -99246202 + L3 LINE CR1 1227 1550 -27 419 349 61 33 chr3 118791876 118792088 -99245070 - MIR SINE MIR -29 233 16 871 274 60 71 chr3 118792599 118793066 -99244092 + HERVL40 LTR ERVL 109 570 -4960 1955 309 41 18 chr3 118793108 118793784 -99243374 + HERVL40 LTR ERVL 566 1257 -4273 256 264 44 11 chr3 118793953 118794044 -99243114 + HERVL40 LTR ERVL 1662 1755 -3775 1693 272 60 27 chr3 118794234 118794856 -99242302 + HERVL40 LTR ERVL 1969 2610 -2920 247 156 219 0 chr3 118794856 118794920 -99242238 + LTR40b LTR ERVL 385 462 0 21 36 0 0 chr3 118795226 118795254 -99241904 + AT_rich Low_complexity Low_complexity 1 28 0 250 239 0 30 chr3 118797622 118797689 -99239469 - MIR SINE MIR -10 252 188 190 295 16 16 chr3 118797729 118797790 -99239368 - MIR SINE MIR -170 92 32 1285 84 18 0 chr3 118798936 118799103 -99238055 - AluY SINE Alu -14 297 128 525 280 110 6 chr3 118800546 118800728 -99236430 - MIR SINE MIR -4 258 58 1959 127 27 7 chr3 118801093 118801392 -99235766 - AluSx SINE Alu -3 309 5 237 364 0 0 chr3 118801527 118801604 -99235554 + MIR3 SINE MIR 98 174 -34 320 177 0 25 chr3 118801685 118801764 -99235394 + GA-rich Low_complexity Low_complexity 4 80 0 180 0 0 0 chr3 118802499 118802519 -99234639 + (CA)n Simple_repeat Simple_repeat 2 21 0 231 217 29 14 chr3 118803259 118803328 -99233830 - MIR SINE MIR -105 157 88 25 51 0 0 chr3 118803784 118803823 -99233335 + AT_rich Low_complexity Low_complexity 1 39 0 1955 163 14 3 chr3 118804812 118805156 -99232002 - MER7A DNA MER2_type 0 346 1 21 0 0 0 chr3 118805203 118805224 -99231934 + AT_rich Low_complexity Low_complexity 1 21 0 508 319 29 48 chr3 118805506 118805779 -99231379 + L2 LINE L2 3005 3272 0 21 36 0 0 chr3 118807080 118807108 -99230050 + AT_rich Low_complexity Low_complexity 1 28 0 2464 124 45 54 chr3 118807331 118807846 -99229312 + L1MA9 LINE L1 5424 5933 -379 1202 212 174 9 chr3 118808011 118808351 -99228807 - MSTD LTR MaLR 0 396 1 252 254 0 0 chr3 118809373 118809444 -99227714 + (TA)n Simple_repeat Simple_repeat 2 72 0 201 232 200 42 chr3 118809565 118809660 -99227498 - L2 LINE L2 -497 2817 2708 1445 141 28 0 chr3 118809750 118809999 -99227159 - Tigger2 DNA MER2_type 0 2718 2463 4124 171 9 4 chr3 118810055 118810808 -99226350 - Tigger2 DNA MER2_type -1961 757 1 1151 210 95 63 chr3 118810926 118811369 -99225789 - MLT1C LTR MaLR -2 465 9 366 291 64 0 chr3 118811522 118811632 -99225526 + MER94 DNA DNA 18 134 0 1103 72 14 0 chr3 118812554 118812692 -99224466 + AluSc SINE Alu 159 298 -11 2402 223 31 93 chr3 118813091 118814027 -99223131 - L1MD2 LINE L1 -227 6526 5649 4336 247 57 38 chr3 118814051 118815883 -99221275 - L1MD2 LINE L1 -1677 4863 2996 1037 250 19 92 chr3 118815941 118816581 -99220577 - L1MD2 LINE L1 -5018 1525 933 269 295 76 0 chr3 118817145 118817250 -99219908 - L1MD2 LINE L1 -6322 218 106 2467 106 31 14 chr3 118817549 118817907 -99219251 + THE1B LTR MaLR 1 364 0 489 276 37 0 chr3 118817907 118818041 -99219117 - MIR SINE MIR -99 163 25 1791 77 0 0 chr3 118818493 118818727 -99218431 - L1PA7 LINE L1 -13 6141 5908 496 292 5 78 chr3 118819120 118819312 -99217846 + MER5B DNA MER1_type 1 178 0 279 0 0 0 chr3 118819698 118819729 -99217429 + (TC)n Simple_repeat Simple_repeat 2 32 0 238 132 38 0 chr3 118819754 118819807 -99217351 + (TA)n Simple_repeat Simple_repeat 1 55 0 1493 217 125 43 chr3 118822368 118822438 -99214720 + MLT1G1 LTR MaLR 1 64 -531 2317 118 6 14 chr3 118822438 118822795 -99214363 + THE1A LTR MaLR 2 355 0 1493 217 125 43 chr3 118822795 118823259 -99213899 + MLT1G1 LTR MaLR 64 579 -16 242 273 0 102 chr3 118823654 118823742 -99213416 - L2 LINE L2 0 3272 3194 1455 174 98 4 chr3 118823785 118824049 -99213109 + AluJb SINE Alu 1 289 -23 684 263 79 33 chr3 118824329 118824569 -99212589 - MIR SINE MIR -10 252 2 200 294 0 0 chr3 118825564 118825615 -99211543 + L2 LINE L2 3000 3050 -222 12200 52 78 9 chr3 118826470 118828200 -99208958 + L1P LINE L1 3 1851 -4295 205 86 0 29 chr3 118828692 118828727 -99208431 + (TTTTTA)n Simple_repeat Simple_repeat 1 34 0 2446 81 3 0 chr3 118829193 118829501 -99207657 + AluSc SINE Alu 1 309 0 2388 80 0 3 chr3 118830342 118830644 -99206514 - AluY SINE Alu -10 301 1 340 298 56 62 chr3 118831617 118831778 -99205380 + MER5A DNA MER1_type 28 187 -2 234 351 40 58 chr3 118831622 118831796 -99205362 - MER5A DNA MER1_type -18 171 1 * 552 286 6 65 chr3 118832191 118832277 -99204881 - MIR3 SINE MIR -34 174 101 1032 236 9 0 chr3 118832277 118832497 -99204661 - MER58A DNA MER1_type -2 222 1 552 286 6 65 chr3 118832497 118832578 -99204580 - MIR3 SINE MIR -107 101 17 223 132 26 0 chr3 118833206 118833244 -99203914 + L2 LINE L2 3265 3303 -10 193 216 39 0 chr3 118833390 118833441 -99203717 + L2 LINE L2 3220 3272 0 310 322 208 33 chr3 118833872 118834371 -99202787 + L2 LINE L2 2665 3262 -10 521 208 67 0 chr3 118835684 118835804 -99201354 - MER5A DNA MER1_type -1 188 61 5854 64 3 0 chr3 118835817 118836594 -99200564 - L1PA8 LINE L1 -1 6171 5393 2904 95 11 0 chr3 118836591 118837044 -99200114 + L1PA8 LINE L1 4932 5389 -757 * 325 215 92 0 chr3 118837044 118837109 -99200049 - MER5A DNA MER1_type -118 71 1 332 264 114 30 chr3 118838897 118839098 -99198060 + L1ME3A LINE L1 5634 5851 -319 446 282 102 51 chr3 118839351 118839567 -99197591 + MIR SINE MIR 32 258 -4 308 24 24 0 chr3 118839643 118839684 -99197474 + (CA)n Simple_repeat Simple_repeat 2 43 0 268 220 0 0 chr3 118842194 118842244 -99194914 - L2 LINE L2 -5 3308 3259 548 217 161 0 chr3 118842496 118842561 -99194597 - MER5A DNA MER1_type -2 187 134 2070 105 0 11 chr3 118842561 118842846 -99194312 - AluSc SINE Alu -10 299 18 548 217 161 0 chr3 118842846 118842941 -99194217 - MER5A DNA MER1_type -55 134 1 227 30 0 30 chr3 118843876 118843909 -99193249 + (TAA)n Simple_repeat Simple_repeat 2 33 0 227 374 88 0 chr3 118844667 118844721 -99192437 - L2 LINE L2 -28 3244 3196 201 74 0 0 chr3 118844721 118844748 -99192410 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 227 374 88 0 chr3 118844748 118844784 -99192374 - L2 LINE L2 -76 3196 3146 781 214 65 44 chr3 118845245 118845539 -99191619 - L1ME4a LINE L1 -2 6119 5820 213 367 10 20 chr3 118845898 118845996 -99191162 + L3 LINE CR1 823 919 -658 292 275 28 99 chr3 118846222 118846364 -99190794 - MIR SINE MIR -78 184 53 1039 311 29 37 chr3 118846417 118846873 -99190285 + L3 LINE CR1 1019 1470 -107 479 278 156 23 chr3 118847133 118847306 -99189852 - MIR SINE MIR -65 197 2 17857 39 8 0 chr3 118849352 118852338 -99184820 - L1PA3 LINE L1 0 6155 3153 187 368 29 0 chr3 118852643 118852711 -99184447 - MIR SINE MIR -173 89 20 284 348 162 50 chr3 118853905 118854244 -99182914 - L2 LINE L2 -33 3239 2863 214 175 0 0 chr3 118854776 118854816 -99182342 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 1919 132 28 14 chr3 118858015 118858304 -99178854 + AluSx SINE Alu 1 293 -19 2297 259 33 33 chr3 118858518 118859152 -99178006 + L1MA7 LINE L1 11 644 -5637 1826 174 58 26 chr3 118859162 118859577 -99177581 + L1MA7 LINE L1 1018 1445 -4836 4226 256 69 38 chr3 118859579 118863024 -99174134 + L1PA15-16 LINE L1 9 3585 -3264 586 148 30 0 chr3 118863021 118863122 -99174036 + L1MA7 LINE L1 3714 3817 -2533 * 230 204 0 0 chr3 118863124 118863168 -99173990 + MSTA LTR MaLR 1 44 -384 2000 136 7 3 chr3 118863176 118863471 -99173687 + AluSq SINE Alu 1 296 -17 270 81 0 0 chr3 118863471 118863508 -99173650 + (GGGGA)n Simple_repeat Simple_repeat 1 37 0 2189 169 38 0 chr3 118863510 118863876 -99173282 + MSTA LTR MaLR 49 428 0 9148 170 30 8 chr3 118863876 118863927 -99173231 + MSTA-int LTR MaLR 1 49 -1602 2147 133 33 25 chr3 118863927 118864288 -99172870 - THE1B LTR MaLR 0 364 1 10329 116 41 0 chr3 118864288 118865806 -99171352 - THE1B-int LTR MaLR 0 1580 1 2123 143 33 30 chr3 118865806 118866169 -99170989 - THE1B LTR MaLR 0 364 1 9148 170 30 8 chr3 118866169 118867722 -99169436 + MSTA-int LTR MaLR 48 1644 -7 2673 154 14 2 chr3 118867728 118868151 -99169007 + MSTA LTR MaLR 1 428 0 252 263 0 0 chr3 118868151 118868208 -99168950 + L1MA7 LINE L1 3818 3874 -2476 1535 116 186 45 chr3 118868208 118868519 -99168639 - THE1A LTR MaLR 0 355 1 2432 198 6 2 chr3 118868519 118869014 -99168144 + L1MA7 LINE L1 3870 4366 -1984 4657 169 46 22 chr3 118869025 118869205 -99167953 + L1MA7 LINE L1 5485 5659 -836 207 0 0 0 chr3 118869205 118869228 -99167930 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4657 169 46 22 chr3 118869228 118870025 -99167133 + L1MA7 LINE L1 5659 6485 -10 186 143 0 0 chr3 118870966 118871001 -99166157 + (T)n Simple_repeat Simple_repeat 1 35 0 401 315 41 22 chr3 118872043 118872196 -99164962 + MER5B DNA MER1_type 17 184 -5 436 267 192 0 chr3 118872206 118872326 -99164832 - MER5A DNA MER1_type 0 189 47 391 242 11 0 chr3 118872355 118872446 -99164712 - MER5B DNA MER1_type 0 178 87 194 320 52 10 chr3 118873033 118873130 -99164028 + MIR SINE MIR 52 152 -110 220 195 24 0 chr3 118873137 118873178 -99163980 + (CA)n Simple_repeat Simple_repeat 1 42 0 3786 159 47 12 chr3 118874256 118874996 -99162162 - LTR1B LTR ERV1 0 785 1 282 338 118 30 chr3 118875677 118875914 -99161244 + L1ME LINE L1 337 594 -5829 1973 240 116 60 chr3 118876053 118877817 -99159341 + L1ME LINE L1 826 2804 -4318 1612 245 88 31 chr3 118877946 118878716 -99158442 + L1ME LINE L1 2825 3607 -3334 517 287 74 4 chr3 118878798 118879028 -99158130 + L1ME LINE L1 6307 6552 -364 477 270 58 35 chr3 118879033 118879207 -99157951 - L2 LINE L2 -4 3309 3132 274 227 15 0 chr3 118879216 118879282 -99157876 + L1ME LINE L1 6555 6621 -295 2284 87 3 19 chr3 118879950 118880259 -99156899 - AluSc SINE Alu 0 309 6 3566 123 10 11 chr3 118880364 118880937 -99156221 - LTR10C LTR ERV1 0 529 12 12846 238 51 55 chr3 118880956 118884815 -99152343 - HERVI LTR ERV1 -2 7783 3943 639 260 35 26 chr3 118885313 118885605 -99151553 - HERVI LTR ERV1 -6331 318 1 3706 115 16 16 chr3 118885619 118886192 -99150966 - LTR10C LTR ERV1 -18 573 1 517 208 10 158 chr3 118886211 118886413 -99150745 + L2 LINE L2 3114 3285 -28 356 234 201 16 chr3 118887685 118887869 -99149289 - HAL1 LINE L1 -2 2505 2288 23 0 0 0 chr3 118887936 118887959 -99149199 + AT_rich Low_complexity Low_complexity 1 23 0 1987 277 82 79 chr3 118888216 118890053 -99147105 - HAL1 LINE L1 -654 1853 11 182 250 203 0 chr3 118891746 118891810 -99145348 + MIR SINE MIR 71 147 -61 426 384 31 23 chr3 118892132 118892484 -99144674 - L2 LINE L2 -407 2907 2553 2302 262 51 54 chr3 118892503 118894266 -99142892 + L1MEc LINE L1 1684 3450 -2765 1611 209 0 3 chr3 118894266 118894572 -99142586 + AluJo SINE Alu 1 305 -7 2302 262 51 54 chr3 118894572 118894680 -99142478 + L1MEc LINE L1 3450 3557 -2658 1772 187 0 0 chr3 118894680 118894979 -99142179 + AluJo SINE Alu 1 299 -13 2499 84 0 0 chr3 118894982 118895291 -99141867 + AluSg1 SINE Alu 1 309 0 2302 262 51 54 chr3 118895291 118895372 -99141786 + L1MEc LINE L1 3559 3592 -2623 24 53 0 0 chr3 118895515 118895553 -99141605 + AT_rich Low_complexity Low_complexity 1 38 0 21 71 0 0 chr3 118896312 118896354 -99140804 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr3 118896957 118896986 -99140172 + AT_rich Low_complexity Low_complexity 1 29 0 1236 266 55 16 chr3 118897848 118898227 -99138931 - L1MCc LINE L1 -5242 1181 788 1757 217 52 15 chr3 118898253 118898659 -99138499 - L1MCc LINE L1 -5985 438 18 464 290 28 21 chr3 118899295 118899440 -99137718 - L2 LINE L2 0 3313 3168 441 178 56 0 chr3 118899446 118899536 -99137622 + L1MA3 LINE L1 11 105 -7460 6358 165 20 7 chr3 118899539 118900869 -99136289 + L1MA3 LINE L1 377 2400 -5165 2867 90 50 14 chr3 118900872 118901294 -99135864 + LTR3b LTR ERVK 1 437 0 13136 182 43 14 chr3 118901303 118901336 -99135822 + L1MA3 LINE L1 2408 2439 -5285 252 0 0 0 chr3 118901336 118901364 -99135794 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 13136 182 43 14 chr3 118901364 118906319 -99130839 + L1MA3 LINE L1 2439 7553 -171 2144 112 0 7 chr3 118906319 118906636 -99130522 + AluSx SINE Alu 3 317 0 13136 182 43 14 chr3 118906636 118906803 -99130355 + L1MA3 LINE L1 7553 7714 -10 781 313 50 18 chr3 118906828 118907170 -99129988 - L2 LINE L2 -142 3171 2819 1475 186 130 6 chr3 118908445 118908806 -99128352 + L1MD3 LINE L1 7576 7981 -14 304 277 119 103 chr3 118908829 118909258 -99127900 + L1ME4a LINE L1 5611 6046 -75 208 258 11 11 chr3 118909394 118909487 -99127671 + CT-rich Low_complexity Low_complexity 2 94 0 186 43 0 0 chr3 118909503 118909526 -99127632 + (TTCC)n Simple_repeat Simple_repeat 2 24 0 2680 151 5 7 chr3 118910095 118910527 -99126631 - MER31A LTR ERV1 -9 476 46 1022 136 33 5 chr3 118910590 118910774 -99126384 + MER53 DNA DNA 1 189 0 192 163 93 0 chr3 118912222 118912265 -99124893 - L2 LINE L2 0 3272 3226 496 266 113 4 chr3 118912325 118912554 -99124604 + L1ME3A LINE L1 5685 5938 -232 21 0 0 0 chr3 118912554 118912575 -99124583 + AT_rich Low_complexity Low_complexity 1 21 0 311 280 76 8 chr3 118912710 118912842 -99124316 + L1ME3A LINE L1 6020 6160 -10 286 382 45 0 chr3 118913436 118913593 -99123565 + L3b LINE CR1 1180 1343 -240 242 29 29 0 chr3 118913599 118913634 -99123524 + (TAGA)n Simple_repeat Simple_repeat 3 38 0 25 31 0 0 chr3 118913856 118913888 -99123270 + AT_rich Low_complexity Low_complexity 1 32 0 255 216 171 0 chr3 118913889 118913977 -99123181 - L1MA7 LINE L1 -22 6269 6167 25 31 0 0 chr3 118913977 118914009 -99123149 + AT_rich Low_complexity Low_complexity 1 32 0 29996 111 12 23 chr3 118914205 118920647 -99116511 + L1PA7 LINE L1 8 6469 0 35 41 0 0 chr3 118921757 118921806 -99115352 + AT_rich Low_complexity Low_complexity 1 49 0 2457 78 0 0 chr3 118922530 118922839 -99114319 - AluSq SINE Alu -4 309 1 757 250 45 0 chr3 118923301 118923477 -99113681 + MER5A DNA MER1_type 4 187 -2 728 112 69 0 chr3 118923655 118924246 -99112912 + (TA)n Simple_repeat Simple_repeat 1 631 0 2136 155 79 20 chr3 118924321 118924727 -99112431 + MSTB1 LTR MaLR 1 430 -2 401 241 105 30 chr3 118924827 118924960 -99112198 - L2 LINE L2 0 3313 3171 1561 126 24 114 chr3 118925082 118925415 -99111743 - AluYb8 SINE Alu -15 303 1 202 284 0 68 chr3 118925438 118925512 -99111646 - L2 LINE L2 -251 3062 2994 1075 292 104 14 chr3 118925681 118926123 -99111035 - L2 LINE L2 -429 2885 2404 443 305 17 0 chr3 118928017 118928135 -99109023 + L2 LINE L2 3192 3311 -2 1038 261 48 14 chr3 118928473 118928804 -99108354 + MER45C DNA AcHobo 1 399 -554 421 253 138 67 chr3 118928834 118928925 -99108233 + MER45C DNA AcHobo 713 796 -785 219 88 0 0 chr3 118928925 118928959 -99108199 + (TG)n Simple_repeat Simple_repeat 1 34 0 421 253 138 67 chr3 118928959 118929092 -99108066 + MER45C DNA AcHobo 796 953 0 1150 211 13 4 chr3 118929196 118929424 -99107734 + LTR16C LTR ERVL 253 482 -9 23 86 0 0 chr3 118929976 118930034 -99107124 + AT_rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr3 118930048 118930069 -99107089 + AT_rich Low_complexity Low_complexity 1 21 0 700 292 23 0 chr3 118930615 118930786 -99106372 + MER5A DNA MER1_type 12 186 -3 583 194 0 0 chr3 118930790 118930883 -99106275 - MER5A DNA MER1_type -94 95 3 288 270 93 52 chr3 118931192 118931294 -99105864 + MIR3 SINE MIR 72 199 -63 884 215 64 43 chr3 118931294 118931527 -99105631 + MER8 DNA MER2_type 1 238 -1 288 270 93 52 chr3 118931527 118931583 -99105575 + MIR3 SINE MIR 199 251 -11 849 209 12 0 chr3 118932374 118932537 -99104621 - AluJb SINE Alu -19 293 129 272 191 30 85 chr3 118932851 118932968 -99104190 - AluJ/FLAM SINE Alu -207 95 1 512 229 235 71 chr3 118932976 118933623 -99103535 - HAL1 LINE L1 -209 2298 1546 7033 39 7 43 chr3 118933626 118934911 -99102247 + L1PA5 LINE L1 4894 6145 -9 43011 31 21 1 chr3 118934917 118940946 -99096212 + L1PA2 LINE L1 2 6152 -3 35 24 0 0 chr3 118940986 118941028 -99096130 + AT_rich Low_complexity Low_complexity 1 42 0 818 211 0 88 chr3 118941226 118941351 -99095807 - MER45A DNA AcHobo -1404 177 73 2269 104 0 22 chr3 118941351 118941668 -99095490 - AluSg SINE Alu 0 310 1 818 211 0 88 chr3 118941668 118941736 -99095422 - MER45A DNA AcHobo -1508 73 1 1303 162 26 9 chr3 118942504 118942733 -99094425 - MER46A DNA MER2_type -2 234 2 262 250 109 61 chr3 118942838 118942996 -99094162 + MIR SINE MIR 52 262 0 21 0 0 0 chr3 118943017 118943038 -99094120 + AT_rich Low_complexity Low_complexity 1 21 0 1102 230 102 0 chr3 118943181 118943455 -99093703 + MER58B DNA MER1_type 38 339 -2 307 336 62 34 chr3 118944331 118944477 -99092681 - MER91A DNA MER1_type -45 151 2 900 288 13 20 chr3 118944569 118944868 -99092290 + L1MC4a LINE L1 5480 5776 -2032 1304 209 28 0 chr3 118944871 118945153 -99092005 - MER58B DNA MER1_type -6 335 46 636 215 98 35 chr3 118945154 118945410 -99091748 + L1MC4a LINE L1 5769 6040 -1768 628 285 64 32 chr3 118945528 118945777 -99091381 + MER102a DNA MER1_type 74 330 0 448 347 57 22 chr3 118946062 118946242 -99090916 - MIR3 SINE MIR -21 187 1 1154 128 76 24 chr3 118946610 118946861 -99090297 + L1MC2 LINE L1 6079 6342 -2 201 147 0 0 chr3 118947527 118947561 -99089597 + (TTCTCC)n Simple_repeat Simple_repeat 3 36 0 276 290 14 0 chr3 118947756 118947825 -99089333 - MIR3 SINE MIR -51 157 88 868 95 43 0 chr3 118948749 118948865 -99088293 - AluSq/x SINE Alu -191 121 1 6702 139 33 14 chr3 118949004 118950212 -99086946 + Tigger3b DNA MER2_type 1 1231 0 25 0 0 0 chr3 118951266 118951291 -99085867 + AT_rich Low_complexity Low_complexity 1 25 0 732 272 56 31 chr3 118951615 118951938 -99085220 - MLT1A2 LTR MaLR -8 366 36 3573 202 36 41 chr3 118952041 118953252 -99083906 - L1M4 LINE L1 -704 5480 4265 2270 98 0 43 chr3 118953547 118953874 -99083284 - AluSq SINE Alu 0 313 1 28 48 0 0 chr3 118954244 118954286 -99082872 + AT_rich Low_complexity Low_complexity 1 42 0 260 224 104 40 chr3 118954431 118954556 -99082602 - HsTC2a DNA Tc2 -163 579 447 2022 209 79 19 chr3 118954629 118955146 -99082012 - MER68 LTR ERV1 -14 548 1 354 243 228 38 chr3 118955156 118955345 -99081813 - HsTC2a DNA Tc2 -400 344 131 2002 130 60 23 chr3 118955725 118956072 -99081086 + THE1B LTR MaLR 1 360 -4 11439 91 17 9 chr3 118956076 118957643 -99079515 + THE1B-int LTR MaLR 1 1580 0 2128 108 51 70 chr3 118957643 118958014 -99079144 + THE1B LTR MaLR 1 364 0 214 300 0 0 chr3 118958168 118958218 -99078940 - MIR3 SINE MIR -49 159 110 810 248 144 33 chr3 118958415 118958811 -99078347 - MLT1D LTR MaLR 0 505 66 325 292 69 35 chr3 118959314 118959458 -99077700 - L2 LINE L2 0 3313 3165 9171 238 38 32 chr3 118959563 118963468 -99073690 + L1MA4A LINE L1 10 3938 -2910 2268 97 20 12 chr3 118963470 118963811 -99073347 - THE1C LTR MaLR 0 375 32 1553 170 50 45 chr3 118963811 118964170 -99072988 + THE1C LTR MaLR 15 375 0 10102 112 54 3 chr3 118964170 118965673 -99071485 + THE1B-int LTR MaLR 1 1580 0 1839 159 39 39 chr3 118965673 118966037 -99071121 + THE1B LTR MaLR 1 364 0 3042 180 37 37 chr3 118966099 118966878 -99070280 + L1MA4A LINE L1 4477 5255 -1593 2107 139 36 15 chr3 118966878 118967210 -99069948 + MER1B DNA MER1_type 1 339 0 5412 157 22 11 chr3 118967210 118967861 -99069297 + L1MA4A LINE L1 5248 5890 -1115 1808 176 7 10 chr3 118967861 118968162 -99068996 - AluJo SINE Alu -12 300 1 5412 157 22 11 chr3 118968162 118969239 -99067919 + L1MA4A LINE L1 5890 6998 -7 30 0 0 0 chr3 118969252 118969282 -99067876 + AT_rich Low_complexity Low_complexity 1 30 0 281 296 151 29 chr3 118969877 118970049 -99067109 - MIR SINE MIR -50 212 20 294 178 317 0 chr3 118970452 118970553 -99066605 + MER39 LTR ERV1 1 133 -574 691 234 122 60 chr3 118970641 118971095 -99066063 + MER39 LTR ERV1 13 707 0 378 337 151 17 chr3 118972594 118972944 -99064214 + L2 LINE L2 1157 1553 -1761 1175 267 46 3 chr3 118973181 118973570 -99063588 - L1MC4a LINE L1 -1881 5927 5522 3866 136 21 21 chr3 118973570 118974223 -99062935 - MER39B LTR ERV1 0 653 1 309 257 143 9 chr3 118974275 118974380 -99062778 - L1MC4a LINE L1 -2377 5431 5313 251 274 0 0 chr3 118974586 118974699 -99062459 - L1MC4a LINE L1 -1653 4493 4381 193 349 60 66 chr3 118975059 118975140 -99062018 + L2 LINE L2 1705 1785 -1529 2557 137 30 23 chr3 118975140 118975571 -99061587 + Tigger2a DNA MER2_type 1 434 0 193 349 60 66 chr3 118975571 118975655 -99061503 + L2 LINE L2 1785 1869 -1445 471 282 19 24 chr3 118975803 118976012 -99061146 + LTR67 LTR ERVL 327 534 -23 1133 353 123 6 chr3 118976042 118976850 -99060308 + L2 LINE L2 1958 2859 -455 387 0 0 0 chr3 118977164 118977207 -99059951 + (CA)n Simple_repeat Simple_repeat 2 44 0 274 353 109 28 chr3 118977237 118977520 -99059638 + L2 LINE L2 3005 3310 -3 2555 195 17 21 chr3 118977691 118978208 -99058950 + MLT2B3 LTR ERVL 1 515 -39 349 138 25 0 chr3 118978208 118978288 -99058870 + (TCTA)n Simple_repeat Simple_repeat 1 82 0 324 115 0 0 chr3 118978290 118978345 -99058813 + MLT2B3 LTR ERVL 466 554 0 770 164 89 14 chr3 118978595 118978741 -99058417 + AluJo SINE Alu 23 179 -133 2576 136 57 97 chr3 118979206 118979825 -99057333 + LTR14B LTR ERVK 15 608 0 286 250 86 35 chr3 118979845 118979961 -99057197 - L2 LINE L2 -1882 1432 1311 28559 123 8 58 chr3 118980774 118987249 -99049909 + L1PA7 LINE L1 9 6153 -1 330 152 76 0 chr3 118987316 118987382 -99049776 - MLT1D LTR MaLR 0 505 435 1457 193 39 63 chr3 118987483 118987603 -99049555 - MLT1D LTR MaLR -66 439 318 1608 199 39 3 chr3 118987603 118987889 -99049269 - AluJo SINE Alu -16 296 1 1457 193 39 63 chr3 118987889 118988209 -99048949 - MLT1D LTR MaLR -187 318 10 1140 176 15 29 chr3 118988406 118988610 -99048548 + AluJo SINE Alu 86 286 -26 414 306 206 0 chr3 118988662 118988871 -99048287 - MIR SINE MIR -8 254 3 359 310 82 53 chr3 118989724 118990095 -99047063 + L2 LINE L2 2709 3091 -181 1084 188 20 8 chr3 118990457 118990707 -99046451 - L1MA4 LINE L1 -6 6294 6042 634 278 154 37 chr3 118991068 118991662 -99045496 - LTR50 LTR ERVL -3 520 2 1378 186 7 54 chr3 118991876 118992106 -99045052 - AluJo SINE Alu 0 319 106 2531 92 43 0 chr3 118992106 118992455 -99044703 + THE1B LTR MaLR 1 364 0 1378 186 7 54 chr3 118992455 118992557 -99044601 - AluJo SINE Alu -213 106 1 493 306 100 19 chr3 118992569 118992840 -99044318 - L2 LINE L2 -71 3242 2950 208 296 80 0 chr3 118993856 118993944 -99043214 + MIR SINE MIR 70 164 -98 418 285 95 93 chr3 118996234 118996813 -99040345 - L1M2 LINE L1 -5743 1106 527 23 54 0 0 chr3 118996889 118996926 -99040232 + GC_rich Low_complexity Low_complexity 1 37 0 189 0 0 0 chr3 118997544 118997565 -99039593 + (A)n Simple_repeat Simple_repeat 1 21 0 195 192 0 58 chr3 118999453 118999505 -99037653 + L3 LINE CR1 1529 1577 0 494 290 36 16 chr3 118999874 119000067 -99037091 + MIR SINE MIR 65 261 -1 1944 134 0 20 chr3 119001205 119001510 -99035648 + AluSx SINE Alu 1 299 -13 21 36 0 0 chr3 119001659 119001687 -99035471 + AT_rich Low_complexity Low_complexity 1 28 0 223 164 262 16 chr3 119002282 119002343 -99034815 + L2 LINE L2 3226 3301 -12 1162 203 75 20 chr3 119002380 119002686 -99034472 - MER33 DNA MER1_type 0 324 2 205 326 151 0 chr3 119002747 119002833 -99034325 + L2 LINE L2 2956 3054 -218 310 240 32 56 chr3 119002959 119003084 -99034074 - MER103 DNA DNA 0 166 45 23 78 0 0 chr3 119004826 119004877 -99032281 + AT_rich Low_complexity Low_complexity 1 51 0 811 204 115 5 chr3 119005517 119005630 -99031528 + AluJo SINE Alu 1 100 -212 189 0 0 0 chr3 119005630 119005651 -99031507 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 811 204 115 5 chr3 119005651 119005728 -99031430 + AluJo SINE Alu 100 212 -100 256 222 204 0 chr3 119006045 119006153 -99031005 + MIR SINE MIR 82 211 -51 507 138 11 43 chr3 119007215 119007309 -99029849 - Charlie3 DNA MER1_type -4 2706 2616 1498 203 122 41 chr3 119007578 119007996 -99029162 - MLT1C LTR MaLR -15 452 1 2009 249 146 34 chr3 119008141 119009992 -99027166 - L1ME3A LINE L1 -5 6165 4099 195 286 44 33 chr3 119010339 119010430 -99026728 - L3 LINE CR1 -343 1234 1143 280 237 114 26 chr3 119010949 119011063 -99026095 - MER94 DNA DNA -6 128 5 1601 136 0 15 chr3 119011994 119012258 -99024900 + Tigger4(Zombi) DNA MER2_type 2472 2731 0 35 92 0 0 chr3 119012311 119012409 -99024749 + AT_rich Low_complexity Low_complexity 1 98 0 308 319 217 0 chr3 119012658 119012796 -99024362 + MIR3 SINE MIR 34 201 -7 655 195 152 18 chr3 119013244 119013408 -99023750 + MER3 DNA MER1_type 14 199 -10 198 333 35 0 chr3 119013606 119013663 -99023495 + L2 LINE L2 3005 3063 -209 187 293 131 20 chr3 119013677 119013776 -99023382 + MIR SINE MIR 67 176 -86 595 284 169 11 chr3 119013916 119014194 -99022964 + L2 LINE L2 859 1180 -2134 3761 239 37 41 chr3 119014229 119015479 -99021679 - L1M4 LINE L1 -937 5209 3965 2133 193 114 34 chr3 119015460 119015953 -99021205 - L1ME1 LINE L1 -326 5909 5346 * 1757 179 3 10 chr3 119015953 119016260 -99020898 - AluJo SINE Alu -7 305 1 2133 193 114 34 chr3 119016260 119016500 -99020658 - L1ME1 LINE L1 -889 5346 5127 1441 214 52 85 chr3 119016497 119016770 -99020388 - L1ME1 LINE L1 -1481 4734 4488 * 1806 169 33 0 chr3 119016770 119017072 -99020086 - AluJb SINE Alu 0 312 1 1441 214 52 85 chr3 119017072 119017377 -99019781 - L1ME1 LINE L1 -1727 4488 4175 238 256 81 0 chr3 119017483 119017569 -99019589 - L1ME1 LINE L1 -6296 100 8 359 298 179 46 chr3 119017591 119017876 -99019282 + L2 LINE L2 1911 2233 -1081 258 250 16 0 chr3 119017873 119017937 -99019221 + L2 LINE L2 3248 3312 -1 * 21 36 0 0 chr3 119019859 119019887 -99017271 + AT_rich Low_complexity Low_complexity 1 28 0 2056 167 60 20 chr3 119020182 119020583 -99016575 - MSTB LTR MaLR -5 421 5 1498 223 37 28 chr3 119020585 119020939 -99016219 - MLT1A2 LTR MaLR -14 360 4 320 285 57 16 chr3 119021440 119021563 -99015595 - L1M4 LINE L1 -1527 4619 4492 241 316 15 52 chr3 119022815 119022951 -99014207 - HAL1b LINE L1 -819 529 399 1075 224 0 26 chr3 119023140 119023368 -99013790 - MLT1E LTR MaLR 0 593 372 488 81 14 0 chr3 119023500 119023574 -99013584 + (TG)n Simple_repeat Simple_repeat 2 76 0 26 30 0 0 chr3 119024222 119024255 -99012903 + AT_rich Low_complexity Low_complexity 1 33 0 234 202 165 37 chr3 119025126 119025235 -99011923 + LTR16A LTR ERVL 320 442 -8 1837 141 4 0 chr3 119025522 119025818 -99011340 + AluSx SINE Alu 13 309 0 1147 214 0 40 chr3 119026556 119026804 -99010354 - MER8 DNA MER2_type 0 239 2 734 173 77 104 chr3 119026817 119027037 -99010121 - MER20 DNA MER1_type -1 218 5 651 237 167 13 chr3 119027252 119027408 -99009750 + MER5A DNA MER1_type 10 189 0 568 235 30 0 chr3 119028125 119028257 -99008901 - MER105 DNA DNA -42 162 27 539 271 107 84 chr3 119028406 119029099 -99008059 + L1ME3A LINE L1 5223 5949 -221 287 286 141 0 chr3 119029471 119029663 -99007495 + L1MEd LINE L1 885 1103 -5016 362 21 21 0 chr3 119030057 119030104 -99007054 + (TA)n Simple_repeat Simple_repeat 1 48 0 23 0 0 0 chr3 119030438 119030461 -99006697 + AT_rich Low_complexity Low_complexity 1 23 0 2003 100 0 53 chr3 119031138 119031438 -99005720 - AluSc SINE Alu -25 284 1 2323 69 0 35 chr3 119032802 119033121 -99004037 - AluY SINE Alu -3 308 1 196 254 0 18 chr3 119033141 119033196 -99003962 + L2 LINE L2 3217 3270 -2 255 227 40 73 chr3 119034086 119034236 -99002922 - HAL1 LINE L1 -1476 1031 887 472 168 11 11 chr3 119034678 119034773 -99002385 - MER20 DNA MER1_type -6 213 119 302 225 87 121 chr3 119034813 119034986 -99002172 - HAL1 LINE L1 -2336 171 5 276 273 136 39 chr3 119035084 119035238 -99001920 + MIR SINE MIR 37 205 -57 264 253 121 50 chr3 119035723 119035822 -99001336 + L2 LINE L2 3208 3313 0 2297 106 0 0 chr3 119035903 119036215 -99000943 - AluSx SINE Alu 0 312 1 27 0 0 0 chr3 119036774 119036801 -99000357 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr3 119037918 119037947 -98999211 + AT_rich Low_complexity Low_complexity 1 29 0 284 340 154 12 chr3 119038184 119038346 -98998812 + L2 LINE L2 3105 3289 -24 1857 146 7 26 chr3 119038451 119038753 -98998405 - AluJb SINE Alu -16 296 1 2039 109 48 7 chr3 119038943 119039237 -98997921 + AluSx SINE Alu 3 308 -4 2216 274 46 55 chr3 119039280 119040389 -98996769 + L2 LINE L2 2225 3313 0 1964 136 7 3 chr3 119040540 119040835 -98996323 - AluSx SINE Alu -15 297 2 2317 86 0 3 chr3 119040841 119041142 -98996016 - AluY SINE Alu -11 300 1 29 70 0 0 chr3 119041425 119041482 -98995676 + AT_rich Low_complexity Low_complexity 1 57 0 26 64 0 0 chr3 119042752 119042799 -98994359 + AT_rich Low_complexity Low_complexity 1 47 0 23 33 0 0 chr3 119043845 119043875 -98993283 + AT_rich Low_complexity Low_complexity 1 30 0 33 25 0 0 chr3 119045565 119045605 -98991553 + AT_rich Low_complexity Low_complexity 1 40 0 25 31 0 0 chr3 119046522 119046554 -98990604 + AT_rich Low_complexity Low_complexity 1 32 0 307 55 18 18 chr3 119048278 119048333 -98988825 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 219 69 0 0 chr3 119048634 119048663 -98988495 + (T)n Simple_repeat Simple_repeat 1 29 0 741 82 172 0 chr3 119048673 119048795 -98988363 - L1PA11 LINE L1 -2 6172 6030 1535 224 169 26 chr3 119049872 119050492 -98986666 - L1MC5 LINE L1 -61 7900 7192 580 261 35 5 chr3 119050830 119051029 -98986129 - Charlie7 DNA MER1_type -249 2363 2159 651 258 73 53 chr3 119051065 119051406 -98985752 - Charlie7 DNA MER1_type -1860 752 405 239 333 0 33 chr3 119051417 119051507 -98985651 + Charlie7 DNA MER1_type 124 210 -2402 306 339 84 31 chr3 119051539 119051766 -98985392 - Charlie7 DNA MER1_type -2245 367 129 293 247 41 27 chr3 119051889 119051962 -98985196 + L2 LINE L2 3193 3266 -6 26 82 0 0 chr3 119052304 119052365 -98984793 + AT_rich Low_complexity Low_complexity 1 61 0 221 156 0 44 chr3 119053848 119053893 -98983265 + MIR SINE MIR 68 110 -152 201 365 40 0 chr3 119054691 119054765 -98982393 + MIR SINE MIR 65 141 -121 31 26 0 0 chr3 119055238 119055276 -98981882 + AT_rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chr3 119055345 119055377 -98981781 + AT_rich Low_complexity Low_complexity 1 32 0 205 330 0 40 chr3 119056501 119056601 -98980557 + MIR SINE MIR 103 198 -64 299 294 39 39 chr3 119056776 119056878 -98980280 + MIR SINE MIR 42 143 -65 2725 7 0 0 chr3 119057022 119057322 -98979836 + AluYa5 SINE Alu 1 300 -11 214 146 0 42 chr3 119059063 119059111 -98978047 + (TTTTG)n Simple_repeat Simple_repeat 3 48 0 438 291 121 17 chr3 119059499 119059877 -98977281 - L1 LINE L1 -1105 5041 4616 369 0 0 0 chr3 119059977 119060018 -98977140 + (TG)n Simple_repeat Simple_repeat 2 42 0 1570 223 156 6 chr3 119061041 119061529 -98975629 + Charlie1 DNA MER1_type 2201 2761 0 387 320 10 0 chr3 119061532 119061632 -98975526 + L2 LINE L2 3192 3292 -21 504 149 74 58 chr3 119061632 119061753 -98975405 - L1MA8 LINE L1 -2 6289 6167 334 268 109 7 chr3 119061929 119062067 -98975091 + L1ME4a LINE L1 5938 6089 -32 1257 290 108 37 chr3 119062359 119063056 -98974102 - L1MC4a LINE L1 -1750 6058 5313 258 316 61 0 chr3 119063982 119064080 -98973078 + MIR SINE MIR 138 241 -21 289 269 167 9 chr3 119064330 119064438 -98972720 - L2 LINE L2 0 3313 3189 2951 204 69 46 chr3 119064489 119065452 -98971706 - L1ME1 LINE L1 -5 6161 5179 2164 87 3 7 chr3 119065452 119065740 -98971418 - AluSc SINE Alu -22 287 1 2951 204 69 46 chr3 119065740 119065787 -98971371 - L1ME1 LINE L1 -987 5179 5135 21 82 0 0 chr3 119066782 119066831 -98970327 + AT_rich Low_complexity Low_complexity 1 49 0 22 56 0 0 chr3 119067007 119067043 -98970115 + AT_rich Low_complexity Low_complexity 1 36 0 389 339 118 31 chr3 119068022 119068276 -98968882 + L3 LINE CR1 1283 1558 -19 896 200 108 8 chr3 119069227 119069575 -98967583 + L1ME LINE L1 5106 5484 -682 208 135 0 0 chr3 119069977 119070014 -98967144 + (T)n Simple_repeat Simple_repeat 1 37 0 536 295 81 124 chr3 119070089 119070695 -98966463 - L3 LINE CR1 -4 1573 994 2266 80 0 0 chr3 119071229 119071518 -98965640 + AluY SINE Alu 1 289 -22 1003 287 83 55 chr3 119071759 119071959 -98965199 - ERVL LTR ERVL -4199 1565 1372 1788 151 90 6 chr3 119071959 119072270 -98964888 + MER1B DNA MER1_type 1 337 0 1003 287 83 55 chr3 119072270 119072612 -98964546 - ERVL LTR ERVL -4392 1372 1008 2217 106 80 9 chr3 119072761 119073111 -98964047 + THE1C LTR MaLR 1 375 0 508 255 13 33 chr3 119073273 119073426 -98963732 - MLT1H1-int LTR MaLR -1221 150 1 624 277 130 80 chr3 119073426 119073986 -98963172 - MLT1H1 LTR MaLR -2 584 6 25 83 0 0 chr3 119074748 119074808 -98962350 + AT_rich Low_complexity Low_complexity 1 60 0 1707 188 103 24 chr3 119074976 119075396 -98961762 - MLT1C LTR MaLR -7 560 1 2269 64 11 0 chr3 119075534 119075849 -98961309 - AluY SINE Alu 0 318 1 600 273 120 60 chr3 119076483 119076867 -98960291 - MLT1I LTR MaLR 0 409 3 228 67 0 0 chr3 119077416 119077446 -98959712 + (TAGG)n Simple_repeat Simple_repeat 2 31 0 1174 63 0 7 chr3 119077920 119078063 -98959095 - AluY SINE Alu -150 161 20 189 0 0 0 chr3 119078068 119078089 -98959069 + (T)n Simple_repeat Simple_repeat 1 21 0 683 258 33 35 chr3 119078976 119079131 -98958027 - MIR SINE MIR 0 262 100 2509 155 45 13 chr3 119079131 119079601 -98957557 - MER31A LTR ERV1 0 485 1 683 258 33 35 chr3 119079601 119079681 -98957477 - MIR SINE MIR -162 100 21 685 296 47 0 chr3 119079720 119079933 -98957225 - MIR SINE MIR -11 251 29 266 243 110 69 chr3 119079955 119080128 -98957030 + MIR3 SINE MIR 21 200 -8 225 94 0 0 chr3 119082635 119082667 -98954491 + (CAT)n Simple_repeat Simple_repeat 3 34 0 1143 210 68 34 chr3 119082958 119083253 -98953905 + MER46C DNA MER2_type 34 338 0 3563 139 104 39 chr3 119083319 119084094 -98953064 - LTR1B LTR ERV1 0 826 1 27 49 0 0 chr3 119085938 119085979 -98951179 + AT_rich Low_complexity Low_complexity 1 41 0 2323 126 52 0 chr3 119136097 119136463 -98900695 + L1PA15 LINE L1 5772 6156 -9 30 0 0 0 chr3 119136463 119136493 -98900665 + AT_rich Low_complexity Low_complexity 1 30 0 325 322 62 51 chr3 119136619 119136796 -98900362 - MIR SINE MIR -64 198 20 447 176 0 0 chr3 119137039 119137113 -98900045 + MER33 DNA MER1_type 11 84 -240 6830 31 1 7 chr3 119137132 119137940 -98899218 - L1PA4 LINE L1 -1 6154 5352 1211 44 0 0 chr3 119137961 119138098 -98899060 - L1PA3 LINE L1 -3 6152 6016 10218 36 1 0 chr3 119138221 119139437 -98897721 - L1PA4 LINE L1 -780 5366 4150 966 214 101 71 chr3 119139471 119139716 -98897442 + MLT2B3 LTR ERVL 1 255 -299 4453 244 105 46 chr3 119139716 119141374 -98895784 - MER52A LTR ERV1 0 1755 1 906 192 138 50 chr3 119141374 119141583 -98895575 + MLT2B3 LTR ERVL 266 456 -69 396 59 44 0 chr3 119141583 119141651 -98895507 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 906 192 138 50 chr3 119141651 119141706 -98895452 + MLT2B3 LTR ERVL 456 505 -20 455 0 18 0 chr3 119141751 119141806 -98895352 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 291 138 19 27 chr3 119141807 119141875 -98895283 + MLT2B3 LTR ERVL 458 554 0 211 245 20 0 chr3 119142523 119142572 -98894586 + CT-rich Low_complexity Low_complexity 2 51 0 894 275 185 15 chr3 119143249 119143737 -98893421 + L2 LINE L2 2731 3312 -1 322 230 14 14 chr3 119143877 119143951 -98893207 - LTR33A LTR ERVL -2 521 448 260 266 68 96 chr3 119144200 119144377 -98892781 - LTR33 LTR ERVL -349 172 1 298 227 13 13 chr3 119146183 119146258 -98890900 - MLT1H LTR MaLR -18 572 498 462 273 31 41 chr3 119146359 119146553 -98890605 - MLT1H LTR MaLR -242 307 116 313 304 122 23 chr3 119147401 119147615 -98889543 + MIR SINE MIR 22 256 -6 2356 95 0 3 chr3 119147836 119148163 -98888995 + AluY SINE Alu 1 326 0 186 43 0 0 chr3 119148408 119148431 -98888727 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 220 314 169 12 chr3 119148610 119148782 -98888376 + L3 LINE CR1 647 845 -732 329 292 61 32 chr3 119148892 119149218 -98887940 + L3 LINE CR1 1030 1480 -97 682 221 127 7 chr3 119149244 119149272 -98887886 - MIR SINE MIR -34 228 205 503 31 15 0 chr3 119149272 119149337 -98887821 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 682 221 127 7 chr3 119149337 119149488 -98887670 - MIR SINE MIR -57 205 31 2435 90 3 0 chr3 119149783 119150084 -98887074 - AluSp SINE Alu -11 302 1 415 327 101 14 chr3 119150158 119150375 -98886783 - MIR SINE MIR -7 255 20 1636 212 129 54 chr3 119150900 119151404 -98885754 - MLT1F LTR MaLR 0 542 1 858 273 19 16 chr3 119152414 119152670 -98884488 - MLT1H LTR MaLR -292 257 1 406 344 43 22 chr3 119153424 119153654 -98883504 - MIR SINE MIR -8 254 20 532 332 31 22 chr3 119154648 119154874 -98882284 - MIR SINE MIR -14 248 21 1763 224 26 6 chr3 119154874 119155223 -98881935 - MLT1A1 LTR MaLR 0 365 10 4593 197 89 6 chr3 119155266 119156560 -98880598 - L1MD1 LINE L1 0 6242 4849 668 323 34 58 chr3 119156641 119157022 -98880136 + L1MB2 LINE L1 434 805 -5498 6074 237 84 34 chr3 119157180 119158000 -98879158 + L1MB2 LINE L1 804 1582 -4800 4494 160 40 13 chr3 119158000 119158855 -98878303 - L1MA8 LINE L1 -10 6281 5404 6074 237 84 34 chr3 119158855 119159557 -98877601 + L1MB2 LINE L1 1582 2247 -4135 183 42 0 0 chr3 119159557 119159581 -98877577 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 6074 237 84 34 chr3 119159581 119161482 -98875676 + L1MB2 LINE L1 2247 4285 -2097 2167 120 3 34 chr3 119161582 119161734 -98875424 - MER4D LTR ERV1 -534 338 183 2021 92 46 0 chr3 119161734 119162016 -98875142 - AluY SINE Alu -16 295 1 2167 120 3 34 chr3 119162016 119162212 -98874946 - MER4D LTR ERV1 -689 183 1 752 178 14 103 chr3 119162250 119162463 -98874695 - MLT1A1 LTR MaLR -171 194 1 4370 227 68 39 chr3 119162463 119163557 -98873601 - MLT1A1-int LTR MaLR 0 1735 611 602 139 19 46 chr3 119163557 119163665 -98873493 + MSTA LTR MaLR 1 105 -323 448 214 129 96 chr3 119163726 119163904 -98873254 + MER5A DNA MER1_type 5 188 -1 324 312 173 5 chr3 119164655 119164857 -98872301 - MIR SINE MIR -20 242 7 2129 119 4 13 chr3 119164970 119165326 -98871832 - L1ME LINE L1 -479 5642 5296 1007 100 7 0 chr3 119165327 119165467 -98871691 + L1P4 LINE L1 5641 5781 -384 4226 211 29 3 chr3 119165569 119167212 -98869946 + L1MB2 LINE L1 4692 6371 -36 1793 255 65 33 chr3 119167212 119168028 -98869130 - L1M4 LINE L1 -1286 4860 4019 360 340 117 6 chr3 119168956 119169118 -98868040 - MIR SINE MIR -79 183 4 183 299 23 35 chr3 119169160 119169247 -98867911 - L2 LINE L2 -211 3061 2976 2515 147 26 2 chr3 119169627 119170043 -98867115 + MSTA LTR MaLR 1 426 -2 2876 6 0 0 chr3 119170140 119170451 -98866707 + AluY SINE Alu 1 311 0 398 211 235 6 chr3 119170517 119170683 -98866475 + MLT1H1 LTR MaLR 347 550 -5 24 0 0 0 chr3 119170999 119171023 -98866135 + AT_rich Low_complexity Low_complexity 1 24 0 281 93 19 0 chr3 119172344 119172398 -98864760 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 2165 92 3 7 chr3 119172401 119172684 -98864474 - AluSp SINE Alu -31 282 1 1119 191 5 0 chr3 119173220 119173424 -98863734 + MER2 DNA MER2_type 1 205 -140 23 33 0 0 chr3 119173424 119173454 -98863704 + AT_rich Low_complexity Low_complexity 1 30 0 311 266 0 0 chr3 119173455 119173519 -98863639 + MER2 DNA MER2_type 281 344 -1 295 381 12 6 chr3 119173659 119173827 -98863331 + L3 LINE CR1 1294 1462 -115 1319 43 4 174 chr3 119174757 119174992 -98862166 - AluY SINE Alu -5 306 112 2280 84 0 42 chr3 119175712 119176020 -98861138 - AluSx SINE Alu -17 295 1 192 370 76 17 chr3 119176742 119176861 -98860297 + MIR3 SINE MIR 39 164 -44 329 287 0 10 chr3 119178345 119178446 -98858712 + CT-rich Low_complexity Low_complexity 1 100 0 471 195 108 23 chr3 119179979 119180142 -98857016 - MLT1C LTR MaLR -332 173 1 268 259 35 47 chr3 119180143 119180228 -98856930 - MIR3 SINE MIR -6 202 119 873 253 72 19 chr3 119180356 119180856 -98856302 + MLT1G LTR MaLR 10 590 0 275 232 18 0 chr3 119181300 119181356 -98855802 - L2 LINE L2 -252 3061 3005 313 319 96 87 chr3 119181877 119182155 -98855003 - L1MEd LINE L1 -5287 832 558 1865 179 18 0 chr3 119182155 119182490 -98854668 - MER58B DNA MER1_type 0 341 1 313 319 96 87 chr3 119182490 119182961 -98854197 - L1MEd LINE L1 -5561 558 76 700 133 0 0 chr3 119184786 119184899 -98852259 - L1PB1 LINE L1 -1 6150 6038 679 331 16 4 chr3 119185012 119185257 -98851901 - MIR SINE MIR -2 260 13 205 349 112 0 chr3 119185219 119185371 -98851787 + MIR3 SINE MIR 27 195 -13 * 651 214 8 0 chr3 119185674 119185805 -98851353 + FLAM_A SINE Alu 1 132 -1 322 299 224 27 chr3 119187216 119187363 -98849795 + MER5B DNA MER1_type 1 176 -2 365 262 16 71 chr3 119187365 119187491 -98849667 + L2 LINE L2 3189 3307 -6 1424 251 38 6 chr3 119187821 119188187 -98848971 + LTR16A LTR ERVL 56 433 -17 566 226 155 22 chr3 119188265 119188446 -98848712 - L2 LINE L2 -30 3283 3079 1188 218 62 3 chr3 119188453 119188742 -98848416 - MER63 DNA MER1_type -2 1060 755 1266 188 39 0 chr3 119188745 119189001 -98848157 - MER63 DNA MER1_type -795 266 1 230 261 145 0 chr3 119189571 119189640 -98847518 + MIR SINE MIR 69 147 -115 6137 131 12 17 chr3 119190090 119190449 -98846709 - L1PB1 LINE L1 -7 6860 6501 447 106 0 0 chr3 119190449 119190515 -98846643 + (TG)n Simple_repeat Simple_repeat 2 67 0 6137 131 12 17 chr3 119190515 119191670 -98845488 - L1PB1 LINE L1 -366 6501 5355 * 15796 134 95 5 chr3 119191668 119192890 -98844268 - L1PB1 LINE L1 -3466 3396 2285 2310 102 0 0 chr3 119192890 119193185 -98843973 - AluSx SINE Alu -17 295 1 15796 134 95 5 chr3 119193185 119195077 -98842081 - L1PB1 LINE L1 -4577 2285 1 22 0 0 0 chr3 119195410 119195432 -98841726 + AT_rich Low_complexity Low_complexity 1 22 0 329 296 105 19 chr3 119195443 119195605 -98841553 - L1ME4a LINE L1 -4 6117 5942 6509 122 9 16 chr3 119195648 119196697 -98840461 - L1MA3 LINE L1 -8 7716 6675 14452 168 31 7 chr3 119196702 119197316 -98839842 - L1MA3 LINE L1 -1113 6452 5854 194 0 0 37 chr3 119197316 119197343 -98839815 + (TTA)n Simple_repeat Simple_repeat 2 27 0 14452 168 31 7 chr3 119197343 119202015 -98835143 - L1MA3 LINE L1 -1711 5854 1038 2749 186 15 8 chr3 119202011 119202534 -98834624 - L1MA3 LINE L1 -7026 539 13 * 315 259 43 17 chr3 119202538 119202654 -98834504 - L1ME4a LINE L1 -229 5892 5774 300 276 35 41 chr3 119202890 119203035 -98834123 + MARNA DNA Mariner 304 447 -139 198 171 0 0 chr3 119203630 119203671 -98833487 + T-rich Low_complexity Low_complexity 1 41 0 1931 174 52 34 chr3 119204323 119204854 -98832304 - MLT2A2 LTR ERVL 0 554 1 1756 177 10 17 chr3 119205972 119206271 -98830887 + AluJo SINE Alu 1 297 -15 427 165 10 10 chr3 119206271 119206367 -98830791 + GA-rich Low_complexity Low_complexity 5 103 0 423 346 96 57 chr3 119206709 119207166 -98829992 - L2 LINE L2 -337 2977 2503 226 213 12 25 chr3 119207383 119207463 -98829695 + T-rich Low_complexity Low_complexity 4 82 0 345 295 75 26 chr3 119207583 119207929 -98829229 + L1ME4a LINE L1 5734 6096 -25 5343 152 19 14 chr3 119208579 119209498 -98827660 + MER49 LTR ERV1 1 923 0 1857 93 100 38 chr3 119210371 119210662 -98826496 + AluY SINE Alu 1 309 -2 552 255 57 99 chr3 119211450 119211713 -98825445 + MIR SINE MIR 11 262 0 206 286 0 0 chr3 119211739 119211781 -98825377 - L2 LINE L2 -21 3292 3251 408 229 195 48 chr3 119212074 119212428 -98824730 - MLT1J1 LTR MaLR 0 446 41 449 232 77 53 chr3 119214781 119214971 -98822187 - MLT1J1 LTR MaLR 0 473 289 396 281 41 0 chr3 119215013 119215159 -98821999 - MLT1J2 LTR MaLR -298 152 1 336 102 0 0 chr3 119216063 119216112 -98821046 + (GA)n Simple_repeat Simple_repeat 1 49 0 407 394 28 11 chr3 119216599 119216779 -98820379 + MIR3 SINE MIR 15 197 -11 1230 293 257 26 chr3 119217493 119218377 -98818781 + L3 LINE CR1 380 1467 -110 430 354 92 17 chr3 119219360 119219654 -98817504 + L2 LINE L2 2148 2463 -851 235 255 63 144 chr3 119219646 119219979 -98817179 - L2 LINE L2 0 3313 3008 * 455 224 23 0 chr3 119220057 119220231 -98816927 + (TA)n Simple_repeat Simple_repeat 1 178 0 7929 182 45 18 chr3 119220610 119221800 -98815358 + L1PA15 LINE L1 3721 4878 -1287 2321 67 0 0 chr3 119221800 119222107 -98815051 + AluY SINE Alu 1 307 0 7929 182 45 18 chr3 119222107 119223323 -98813835 + L1PA15 LINE L1 4878 6152 -13 23 0 0 0 chr3 119223341 119223364 -98813794 + AT_rich Low_complexity Low_complexity 1 23 0 275 346 67 82 chr3 119223437 119223752 -98813406 - L2 LINE L2 -5 3267 2958 474 290 25 12 chr3 119223791 119223953 -98813205 + MLT1I LTR MaLR 1 164 -245 447 290 220 10 chr3 119224307 119224621 -98812537 + L1ME LINE L1 5265 5644 -477 364 232 87 14 chr3 119225048 119225186 -98811972 + L1ME LINE L1 5632 5779 -342 458 313 103 10 chr3 119225470 119225665 -98811493 + MIR SINE MIR 2 214 -48 286 280 63 49 chr3 119226730 119226873 -98810285 - MIR3 SINE MIR -21 187 43 756 228 13 13 chr3 119227066 119227224 -98809934 + MER5B DNA MER1_type 20 177 -1 354 267 38 111 chr3 119228196 119228458 -98808700 + MLT1I LTR MaLR 90 332 -77 399 283 20 20 chr3 119228792 119228944 -98808214 - MLT1K LTR MaLR -22 566 415 3862 157 34 76 chr3 119228975 119230007 -98807151 - L1MB7 LINE L1 -5 6179 5189 239 36 18 71 chr3 119230014 119230070 -98807088 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 1373 205 19 13 chr3 119230078 119230461 -98806697 - L1MB7 LINE L1 -941 5205 4828 446 167 8 87 chr3 119230445 119230512 -98806646 + L1MB7 LINE L1 6050 6104 -80 * 2251 103 0 39 chr3 119230512 119230823 -98806335 + AluY SINE Alu 1 299 -12 446 167 8 87 chr3 119230823 119230881 -98806277 + L1MB7 LINE L1 6104 6165 -19 974 154 15 46 chr3 119232015 119232210 -98804948 - MER5A DNA MER1_type 0 189 1 375 238 175 44 chr3 119232252 119232412 -98804746 + MER5A DNA MER1_type 9 189 0 549 238 43 32 chr3 119232560 119232745 -98804413 - LTR33 LTR ERVL -3 518 332 493 256 28 17 chr3 119232750 119232926 -98804232 - LTR33 LTR ERVL -307 214 37 490 277 168 0 chr3 119233491 119233628 -98803530 - MER5A DNA MER1_type -21 168 9 204 312 39 26 chr3 119234247 119234324 -98802834 - L2 LINE L2 -6 3266 3189 237 233 43 112 chr3 119234718 119234834 -98802324 - L2 LINE L2 -233 3039 2932 195 42 0 0 chr3 119236152 119236176 -98800982 + (T)n Simple_repeat Simple_repeat 1 24 0 634 180 44 27 chr3 119236203 119236386 -98800772 + MER53 DNA DNA 1 186 -3 367 290 35 21 chr3 119237855 119238000 -98799158 - MIR SINE MIR -43 219 73 226 265 15 0 chr3 119238709 119238777 -98798381 + MLT1J2 LTR MaLR 343 411 -39 356 263 74 0 chr3 119238799 119238894 -98798264 + MER5A DNA MER1_type 8 109 -80 223 290 87 0 chr3 119239067 119239136 -98798022 + MER5A DNA MER1_type 90 164 -25 21 71 0 0 chr3 119239211 119239253 -98797905 + AT_rich Low_complexity Low_complexity 1 42 0 1901 32 0 9 chr3 119240360 119240616 -98796542 + AluY SINE Alu 63 316 0 217 178 0 22 chr3 119241547 119241592 -98795566 + GA-rich Low_complexity Low_complexity 4 47 0 2186 240 49 6 chr3 119241623 119242157 -98795001 + MER68 LTR ERV1 6 562 0 258 256 26 13 chr3 119242588 119242666 -98794492 + MIR SINE MIR 172 250 -12 197 327 139 30 chr3 119242996 119243097 -98794061 + MIR3 SINE MIR 13 124 -84 2211 147 39 14 chr3 119243097 119243452 -98793706 + THE1B LTR MaLR 1 364 0 11276 101 14 2 chr3 119243452 119245013 -98792145 + THE1B-int LTR MaLR 1 1580 0 2035 147 51 20 chr3 119245023 119245376 -98791782 + THE1B LTR MaLR 1 364 0 208 263 0 18 chr3 119246979 119247036 -98790122 + CT-rich Low_complexity Low_complexity 4 59 0 390 21 0 0 chr3 119247038 119247085 -98790073 + (CA)n Simple_repeat Simple_repeat 1 47 0 180 0 0 0 chr3 119248020 119248040 -98789118 + (TAA)n Simple_repeat Simple_repeat 1 20 0 1809 234 21 37 chr3 119248045 119248557 -98788601 + MLT1D LTR MaLR 2 505 0 419 274 6 61 chr3 119248566 119248730 -98788428 - MIR SINE MIR 0 262 108 2956 141 10 2 chr3 119248843 119249346 -98787812 - MER41B LTR ERV1 -126 509 3 11254 123 38 21 chr3 119249348 119251519 -98785639 - MER41B-int LTR ERV1 0 5946 2027 256 139 0 0 chr3 119251502 119251545 -98785613 - MER41B-int LTR ERV1 -3523 4014 3972 * 4172 129 37 34 chr3 119251532 119252309 -98784849 - MER41B-int LTR ERV1 -3000 2946 2167 3547 133 64 25 chr3 119252308 119252822 -98784336 - MER41B-int LTR ERV1 -3932 2014 1357 * 2394 88 0 3 chr3 119252822 119253130 -98784028 + AluY SINE Alu 1 307 -4 3547 133 64 25 chr3 119253130 119253355 -98783803 - MER41B-int LTR ERV1 -4589 1357 1142 * 3969 128 29 2 chr3 119253352 119253938 -98783220 - MER41B-int LTR ERV1 -5343 603 2 1009 117 7 0 chr3 119253939 119254093 -98783065 - MER41B LTR ERV1 0 635 481 421 296 32 56 chr3 119254334 119254584 -98782574 - L2 LINE L2 -212 3060 2817 556 336 83 20 chr3 119254635 119254983 -98782175 + L2 LINE L2 1802 2171 -1143 530 342 115 22 chr3 119255236 119255600 -98781558 - L2 LINE L2 -641 2673 2267 2086 127 39 41 chr3 119255600 119255963 -98781195 + THE1B LTR MaLR 1 362 -2 530 342 115 22 chr3 119255963 119255999 -98781159 - L2 LINE L2 -1047 2267 2236 1474 199 21 81 chr3 119256197 119256618 -98780540 + MSTD LTR MaLR 1 396 0 1447 199 126 35 chr3 119257212 119257640 -98779518 + MLT1C LTR MaLR 1 467 0 12924 147 64 6 chr3 119258038 119258218 -98778940 + Tigger1 DNA MER2_type 1 169 -2249 303 93 0 0 chr3 119258218 119258261 -98778897 + (CAT)n Simple_repeat Simple_repeat 2 44 0 12924 147 64 6 chr3 119258261 119260365 -98776793 + Tigger1 DNA MER2_type 169 2417 -1 42 20 0 0 chr3 119260367 119260416 -98776742 + AT_rich Low_complexity Low_complexity 1 49 0 2130 135 140 8 chr3 119261701 119262079 -98775079 + MSTA LTR MaLR 1 428 0 8378 181 54 3 chr3 119262079 119263650 -98773508 + MSTA-int LTR MaLR 1 1651 0 2174 138 125 8 chr3 119263650 119264033 -98773125 + MSTA LTR MaLR 1 428 0 183 42 0 0 chr3 119264648 119264672 -98772486 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 201 264 75 0 chr3 119264940 119264993 -98772165 + L2 LINE L2 3216 3272 0 379 276 211 0 chr3 119266689 119266845 -98770313 + MER5A DNA MER1_type 1 189 0 195 162 0 0 chr3 119268305 119268342 -98768816 + (CA)n Simple_repeat Simple_repeat 2 38 0 265 286 13 0 chr3 119268524 119268601 -98768557 - MIR SINE MIR 0 262 185 737 100 0 0 chr3 119268637 119268737 -98768421 - AluSg/x SINE Alu -12 300 201 877 102 0 0 chr3 119268853 119268971 -98768187 - AluSg/x SINE Alu -12 300 183 196 250 23 0 chr3 119269043 119269087 -98768071 + MIR SINE MIR 45 89 -119 531 217 177 29 chr3 119269284 119269459 -98767699 + MIR SINE MIR 57 257 -5 275 319 78 28 chr3 119270753 119270894 -98766264 + MIR SINE MIR 1 148 -114 216 271 0 0 chr3 119270931 119270979 -98766179 + CT-rich Low_complexity Low_complexity 4 51 0 1280 199 11 113 chr3 119271670 119272042 -98765116 - MLT1B LTR MaLR 0 390 57 1479 244 78 16 chr3 119272160 119272583 -98764575 + LTR40b LTR ERVL 6 454 -8 396 260 17 13 chr3 119272591 119272736 -98764422 - L1M3 LINE L1 -737 5429 5294 3215 181 59 8 chr3 119272738 119273334 -98763824 - MER44D DNA MER2_type -1 604 107 2810 138 17 18 chr3 119273344 119273918 -98763240 + L1P4 LINE L1 5141 5705 -456 1847 286 71 16 chr3 119273924 119274163 -98762995 + L1M2 LINE L1 1639 1863 -4986 252 0 0 0 chr3 119274163 119274191 -98762967 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1847 286 71 16 chr3 119274191 119274243 -98762915 + L1M2 LINE L1 1863 1911 -4938 2072 68 8 8 chr3 119274243 119274507 -98762651 + AluY SINE Alu 34 297 -14 1847 286 71 16 chr3 119274507 119275183 -98761975 + L1M2 LINE L1 1911 2661 -4188 2005 122 7 14 chr3 119275184 119275478 -98761680 + AluSc SINE Alu 1 292 -17 327 104 0 0 chr3 119275585 119275633 -98761525 + Alu SINE Alu 259 306 -2 13727 204 23 20 chr3 119275908 119279452 -98757706 + L1PB1 LINE L1 6 3868 -2999 186 43 0 0 chr3 119279452 119279475 -98757683 + (CAA)n Simple_repeat Simple_repeat 2 24 0 13727 204 23 20 chr3 119279475 119282483 -98754675 + L1PB1 LINE L1 3868 6863 -4 539 115 106 10 chr3 119282492 119282596 -98754562 + L1PA10 LINE L1 6054 6167 -1 26420 120 88 30 chr3 119282661 119288479 -98748679 + L1PA8 LINE L1 2 6168 -4 339 170 150 0 chr3 119288474 119288574 -98748584 + L1MC3 LINE L1 7575 7689 -96 * 912 218 58 4 chr3 119288632 119288875 -98748283 + MER69 DNA AcHobo 2251 2506 -20 454 280 17 0 chr3 119289119 119289237 -98747921 + MIR SINE MIR 56 175 -87 4315 230 30 10 chr3 119289712 119291113 -98746045 + L1MA4A LINE L1 3165 4592 -2973 6921 29 0 0 chr3 119291117 119291932 -98745226 - L1PA3 LINE L1 -1936 4210 3396 9599 35 1 0 chr3 119291932 119293862 -98743296 + L1PA3 LINE L1 4222 6153 -2 8671 209 18 20 chr3 119293868 119295984 -98741174 + L1MA4A LINE L1 4584 6694 -871 1414 205 89 80 chr3 119295984 119296513 -98740645 + MER66A LTR ERV1 97 471 -7 270 125 0 0 chr3 119296544 119296592 -98740566 + (A)n Simple_repeat Simple_repeat 1 48 0 3372 167 82 113 chr3 119296599 119297627 -98739531 + L1MA4A LINE L1 6722 7717 -5 279 244 43 28 chr3 119297639 119297733 -98739425 - L1MEc LINE L1 -2558 3657 3563 2186 127 0 3 chr3 119297747 119298055 -98739103 + AluSq SINE Alu 1 307 -6 5270 166 28 13 chr3 119298056 119298295 -98738863 - L1MC1 LINE L1 -15 6318 6084 2102 148 11 32 chr3 119298295 119298666 -98738492 + MLT1A1 LTR MaLR 1 363 -2 5270 166 28 13 chr3 119298666 119299421 -98737737 - L1MC1 LINE L1 -249 6084 5309 1709 197 61 25 chr3 119299418 119299890 -98737268 - L1MC1 LINE L1 -1075 5071 4583 * 3481 252 97 26 chr3 119299903 119302379 -98734779 - L1MEc LINE L1 -2647 3568 925 1946 126 37 50 chr3 119302379 119302759 -98734399 - THE1C LTR MaLR 0 375 1 3481 252 97 26 chr3 119302759 119302828 -98734330 - L1MEc LINE L1 -5290 925 862 1283 301 42 5 chr3 119302826 119303251 -98733907 - L1MEc LINE L1 -5919 477 37 * 29 0 0 0 chr3 119303770 119303799 -98733359 + AT_rich Low_complexity Low_complexity 1 29 0 192 243 0 0 chr3 119304004 119304078 -98733080 + A-rich Low_complexity Low_complexity 4 77 0 2207 106 13 6 chr3 119305784 119306095 -98731063 - AluSp SINE Alu 0 313 1 254 57 0 0 chr3 119306126 119306161 -98730997 - L1MA5 LINE L1 -18 6282 6248 * 5947 221 55 17 chr3 119306159 119309014 -98728144 - L1 LINE L1 -3002 4165 1108 2563 269 75 18 chr3 119309010 119310132 -98727026 - L1M4 LINE L1 -1976 4170 2985 * 618 143 0 29 chr3 119310119 119310224 -98726934 - L1M1 LINE L1 -573 5727 5626 * 526 183 0 0 chr3 119310227 119310320 -98726838 + L1PB1 LINE L1 1067 1159 -5704 13454 187 44 8 chr3 119310322 119315672 -98721486 + L1PB1 LINE L1 1311 6867 0 1428 278 65 27 chr3 119315685 119315918 -98721240 - L1MEc LINE L1 -5831 565 342 1954 138 37 42 chr3 119315918 119316295 -98720863 - THE1C LTR MaLR 0 375 1 1428 278 65 27 chr3 119316295 119316572 -98720586 - L1MEc LINE L1 -6054 342 36 664 312 11 11 chr3 119318201 119318387 -98718771 - MER5A DNA MER1_type -3 186 1 1103 170 97 102 chr3 119319488 119319871 -98717287 - MLT1C LTR MaLR 0 390 10 2072 100 7 0 chr3 119324813 119325084 -98712074 + AluSx SINE Alu 1 273 -39 892 244 56 0 chr3 119325571 119325768 -98711390 - LTR16A LTR ERVL 0 450 243 3172 161 7 6 chr3 119325771 119326794 -98710364 + L1PB1 LINE L1 4724 5745 -406 235 102 20 20 chr3 119326996 119327045 -98710113 + (TA)n Simple_repeat Simple_repeat 2 50 0 2316 140 0 5 chr3 119327046 119327417 -98709741 + L1PB1 LINE L1 5783 6151 0 3230 256 30 25 chr3 119327446 119328596 -98708562 + L1PA15-16 LINE L1 1668 2822 -4027 1216 165 91 4 chr3 119328590 119328844 -98708314 + L1M4 LINE L1 5460 5735 -449 * 5158 254 30 16 chr3 119328967 119330873 -98706285 + L1PA15-16 LINE L1 1739 3655 -3194 * 7133 208 42 30 chr3 119330857 119332561 -98704597 + L1PA15-16 LINE L1 4025 5748 -1101 1843 185 43 38 chr3 119332565 119332987 -98704171 + MSTB LTR MaLR 1 424 -2 7339 206 33 4 chr3 119332990 119334398 -98702760 + MSTB-int LTR MaLR 1 1449 -202 737 78 0 19 chr3 119334398 119334501 -98702657 + MSTA LTR MaLR 285 385 -43 2317 128 50 6 chr3 119334501 119334860 -98702298 - THE1C LTR MaLR 0 375 1 1979 89 4 4 chr3 119334871 119335142 -98702016 - THE1C-int LTR MaLR -12 1568 1298 1039 210 0 0 chr3 119335139 119335334 -98701824 - L1P LINE L1 -4304 1842 1648 * 11458 188 26 31 chr3 119335335 119337281 -98699877 + L1MA9 LINE L1 2523 4445 -1867 2476 73 0 0 chr3 119337281 119337581 -98699577 - AluY SINE Alu -11 300 1 11458 188 26 31 chr3 119337581 119338920 -98698238 + L1MA9 LINE L1 4445 5789 -523 236 241 13 0 chr3 119338928 119339007 -98698151 + (TA)n Simple_repeat Simple_repeat 2 81 0 1305 170 22 64 chr3 119339038 119339349 -98697809 + L1MA9 LINE L1 5804 6101 -211 918 217 63 0 chr3 119339355 119339544 -98697614 + Tigger3(Golem) DNA MER2_type 1 201 -2828 * 3415 148 46 17 chr3 119339538 119340194 -98696964 + Tigger3(Golem) DNA MER2_type 2355 3029 0 582 112 71 0 chr3 119340194 119340292 -98696866 + L1MA9 LINE L1 6103 6207 -105 1708 191 36 12 chr3 119340565 119340900 -98696258 + MER2 DNA MER2_type 2 344 0 397 318 54 0 chr3 119341168 119341297 -98695861 - MIR SINE MIR -43 219 84 181 237 0 0 chr3 119341941 119341979 -98695179 - L2 LINE L2 -15 3298 3261 532 312 99 28 chr3 119342412 119342774 -98694384 + MLT1K LTR MaLR 201 588 0 258 388 133 5 chr3 119343455 119343643 -98693515 + L2 LINE L2 3052 3263 -9 23 0 0 0 chr3 119343643 119343666 -98693492 + AT_rich Low_complexity Low_complexity 1 23 0 180 195 11 138 chr3 119343944 119344031 -98693127 - L3 LINE CR1 0 1577 1502 536 276 164 13 chr3 119345536 119345688 -98691470 - MER5A DNA MER1_type -7 182 8 249 333 23 23 chr3 119345705 119345792 -98691366 - MER5A DNA MER1_type -3 186 89 24 0 0 0 chr3 119345826 119345850 -98691308 + AT_rich Low_complexity Low_complexity 1 24 0 30253 108 8 23 chr3 119345857 119352261 -98684897 - L1PA7 LINE L1 -9 6460 58 16386 113 11 18 chr3 119352363 119356840 -98680318 - L1P3 LINE L1 -1948 4513 7 3675 253 50 46 chr3 119357158 119358132 -98679026 + L1PA15 LINE L1 1 978 -5809 4628 224 16 20 chr3 119358164 119359320 -98677838 + L1PA15 LINE L1 2132 3282 -3515 10987 197 6 1 chr3 119359321 119359967 -98677191 + L1PA15 LINE L1 3361 4003 -2813 1845 139 3 37 chr3 119359967 119360302 -98676856 + AluSx SINE Alu 1 325 0 10987 197 6 1 chr3 119360302 119363114 -98674044 + L1PA15 LINE L1 4003 6812 -4 22 0 0 0 chr3 119363205 119363227 -98673931 + AT_rich Low_complexity Low_complexity 1 22 0 222 37 0 0 chr3 119363294 119363331 -98673827 + (CA)n Simple_repeat Simple_repeat 1 64 0 222 37 0 0 chr3 119363331 119363358 -98673800 + (CA)n Simple_repeat Simple_repeat 2 28 0 472 332 93 14 chr3 119364085 119364299 -98672859 + MIR SINE MIR 20 250 -12 478 269 53 25 chr3 119364781 119364983 -98672175 - MIR SINE MIR -14 248 37 1431 86 19 119 chr3 119364983 119365252 -98671906 + LTR12 LTR ERV1 33 274 -440 300 272 0 0 chr3 119365254 119365335 -98671823 + LTR30 LTR ERV1 544 624 -98 826 108 25 8 chr3 119365335 119365455 -98671703 + LTR12 LTR ERV1 359 480 -234 324 352 114 0 chr3 119365783 119365959 -98671199 - MIR SINE MIR -59 203 8 219 280 210 20 chr3 119366631 119366731 -98670427 - L2 LINE L2 -5 3308 3190 246 128 0 0 chr3 119366769 119366808 -98670350 + (CA)n Simple_repeat Simple_repeat 2 40 0 540 285 24 12 chr3 119366855 119367020 -98670138 - MIR SINE MIR -48 214 48 436 70 0 93 chr3 119367050 119367136 -98670022 - L1PA7 LINE L1 0 6154 6077 32 75 0 0 chr3 119368107 119368174 -98668984 + AT_rich Low_complexity Low_complexity 1 67 0 248 346 59 0 chr3 119368193 119368294 -98668864 - MIR SINE MIR -72 190 84 681 306 66 29 chr3 119368499 119369044 -98668114 - L1M4 LINE L1 -1667 4479 3915 239 301 66 71 chr3 119369195 119369378 -98667780 - L2 LINE L2 -463 2851 2670 234 62 0 0 chr3 119369976 119370008 -98667150 + (GA)n Simple_repeat Simple_repeat 1 32 0 182 326 0 0 chr3 119370224 119370273 -98666885 - L2 LINE L2 -1894 1420 1372 341 321 29 51 chr3 119370822 119370959 -98666199 + MIR3 SINE MIR 13 146 -62 251 261 0 14 chr3 119370960 119371029 -98666129 + GA-rich Low_complexity Low_complexity 1 68 0 241 235 0 0 chr3 119371208 119371259 -98665899 + CT-rich Low_complexity Low_complexity 3 53 0 1844 114 0 8 chr3 119372955 119373209 -98663949 - AluSx SINE Alu -15 297 46 3254 225 41 34 chr3 119373307 119374240 -98662918 - L1MC3 LINE L1 -83 7702 6764 191 197 213 0 chr3 119376095 119376156 -98661002 - MIR SINE MIR -118 144 71 * 251 349 40 13 chr3 119376142 119376291 -98660867 - L3b LINE CR1 -94 1489 1337 22 0 0 0 chr3 119377147 119377169 -98659989 + AT_rich Low_complexity Low_complexity 1 22 0 24085 173 31 24 chr3 119377181 119383530 -98653628 - L1PA10 LINE L1 -4 6479 10 473 302 47 17 chr3 119383776 119383948 -98653210 - MIR3 SINE MIR -11 197 21 282 308 19 28 chr3 119384303 119384410 -98652748 - MIR SINE MIR -16 246 141 343 349 15 8 chr3 119384883 119385015 -98652143 + L2 LINE L2 2896 3028 -244 224 304 19 41 chr3 119385091 119385229 -98651929 - MIR3 SINE MIR -1 207 8 24 0 0 0 chr3 119387353 119387377 -98649781 + AT_rich Low_complexity Low_complexity 1 24 0 369 0 0 0 chr3 119388280 119388321 -98648837 + (CA)n Simple_repeat Simple_repeat 1 41 0 4085 92 0 4 chr3 119389008 119389564 -98647594 - MER41A LTR ERV1 0 554 1 394 355 72 57 chr3 119389915 119390304 -98646854 - L2 LINE L2 0 3272 2878 2590 129 2 86 chr3 119391241 119391706 -98645452 - MSTB LTR MaLR 0 426 1 342 331 16 8 chr3 119392672 119392796 -98644362 - MIR SINE MIR -135 127 3 1007 129 6 0 chr3 119393008 119393171 -98643987 + L1MA5 LINE L1 6137 6300 0 459 248 0 0 chr3 119393765 119393886 -98643272 + (TA)n Simple_repeat Simple_repeat 1 121 0 219 36 0 0 chr3 119395473 119395501 -98641657 + (CA)n Simple_repeat Simple_repeat 2 29 0 3092 66 2 10 chr3 119395993 119396514 -98640644 + L1PA8A LINE L1 5516 6128 -3 230 247 68 0 chr3 119396521 119396594 -98640564 + HAL1b LINE L1 83 160 -1188 2083 112 41 0 chr3 119396795 119397089 -98640069 + AluSx SINE Alu 4 309 -3 5564 255 50 21 chr3 119398345 119399421 -98637737 + L1PBb LINE L1 709 1752 -4451 15172 27 0 0 chr3 119399421 119402010 -98635148 + L1PA3 LINE L1 3571 6152 -3 5564 255 50 21 chr3 119402010 119403064 -98634094 + L1PBb LINE L1 1752 2973 -3230 2439 159 14 5 chr3 119403069 119403502 -98633656 + L1PA16 LINE L1 5710 6146 -20 26 30 0 0 chr3 119403502 119403535 -98633623 + AT_rich Low_complexity Low_complexity 1 33 0 298 318 138 18 chr3 119403612 119403829 -98633329 + HAL1b LINE L1 300 542 -806 341 288 34 41 chr3 119403932 119404078 -98633080 + HAL1b LINE L1 685 829 -519 341 342 69 31 chr3 119404689 119404875 -98632283 + HAL1b LINE L1 449 672 -676 25 0 0 0 chr3 119404875 119404900 -98632258 + AT_rich Low_complexity Low_complexity 1 25 0 341 342 69 31 chr3 119404900 119404949 -98632209 + HAL1b LINE L1 672 718 -630 27 62 0 0 chr3 119405039 119405087 -98632071 + AT_rich Low_complexity Low_complexity 1 48 0 387 131 0 0 chr3 119405841 119405902 -98631256 - MER54B LTR ERVL -230 563 503 351 0 0 0 chr3 119405909 119405948 -98631210 + (TC)n Simple_repeat Simple_repeat 2 40 0 209 91 45 0 chr3 119406009 119406053 -98631105 + A-rich Low_complexity Low_complexity 4 49 0 3577 162 74 30 chr3 119406124 119406285 -98630873 - MER54B LTR ERVL 0 793 640 5097 134 3 6 chr3 119406285 119407068 -98630090 - LTR17 LTR ERV1 0 780 1 3577 162 74 30 chr3 119407068 119407666 -98629492 - MER54B LTR ERVL -153 640 1 290 324 104 29 chr3 119408143 119408421 -98628737 + HAL1b LINE L1 306 604 -744 524 337 26 34 chr3 119408424 119408898 -98628260 + L1 LINE L1 2966 3458 -2688 225 310 68 25 chr3 119409072 119409353 -98627805 + L1P LINE L1 3686 3978 -2168 593 316 44 36 chr3 119409431 119409792 -98627366 + L1 LINE L1 4066 4429 -1717 1846 260 85 43 chr3 119409810 119410605 -98626553 + L1ME1 LINE L1 6 766 -5314 2155 27 0 19 chr3 119410605 119410863 -98626295 + AluY SINE Alu 53 305 -6 1846 260 85 43 chr3 119410863 119411532 -98625626 + L1ME1 LINE L1 766 1555 -4525 236 30 30 0 chr3 119411532 119411565 -98625593 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1846 260 85 43 chr3 119411565 119411946 -98625212 + L1ME1 LINE L1 1555 1918 -4162 1805 200 102 2 chr3 119411970 119412575 -98624583 + L1ME1 LINE L1 2487 3152 -2928 1383 226 134 17 chr3 119412669 119413315 -98623843 - L1MB8 LINE L1 -5 6173 5430 825 175 0 7 chr3 119413361 119413498 -98623660 + FLAM_C SINE Alu 2 137 -6 507 231 0 81 chr3 119413500 119413660 -98623498 + MER58B DNA MER1_type 195 341 0 231 204 0 0 chr3 119413660 119413714 -98623444 + L1ME1 LINE L1 3145 3198 -2882 462 253 56 6 chr3 119413828 119413990 -98623168 + L1ME1 LINE L1 3355 3524 -2556 2011 181 45 17 chr3 119414044 119414463 -98622695 + MLT1C LTR MaLR 37 467 0 1792 236 51 63 chr3 119414463 119415290 -98621868 + L1ME1 LINE L1 3556 4372 -1708 2898 239 60 26 chr3 119415354 119416572 -98620586 + L1ME1 LINE L1 4820 6095 -5 280 226 20 62 chr3 119416819 119416965 -98620193 + L1 LINE L1 4636 4775 -1305 2061 233 99 52 chr3 119417395 119418148 -98619010 + L1MCa LINE L1 1 772 -5273 1730 196 36 3 chr3 119418243 119418630 -98618528 + L1MCa LINE L1 782 1181 -4864 1039 137 72 6 chr3 119418630 119418846 -98618312 + LTR18B LTR ERVL 1 261 -96 1588 203 116 14 chr3 119418879 119419513 -98617645 + L1MCa LINE L1 1722 2321 -4243 972 186 183 56 chr3 119419595 119419917 -98617241 - MLT1A1 LTR MaLR 0 365 3 261 273 66 58 chr3 119420948 119420974 -98616184 + L2 LINE L2 3192 3216 -97 2382 171 29 2 chr3 119420974 119421389 -98615769 + MSTB LTR MaLR 1 426 0 261 273 66 58 chr3 119421389 119421483 -98615675 + L2 LINE L2 3216 3313 0 309 349 71 0 chr3 119422909 119423035 -98614123 - MIR3 SINE MIR -7 201 67 21 0 0 0 chr3 119423469 119423490 -98613668 + AT_rich Low_complexity Low_complexity 1 21 0 580 288 30 30 chr3 119426193 119426391 -98610767 + MIR3 SINE MIR 2 199 -9 580 308 24 72 chr3 119426530 119426780 -98610378 - MIR SINE MIR -8 254 17 29 0 0 0 chr3 119427170 119427199 -98609959 + AT_rich Low_complexity Low_complexity 1 29 0 201 121 0 0 chr3 119427854 119427887 -98609271 + (CA)n Simple_repeat Simple_repeat 2 34 0 23 33 0 0 chr3 119431869 119431899 -98605259 + AT_rich Low_complexity Low_complexity 1 30 0 254 283 43 87 chr3 119432055 119432193 -98604965 - MIR3 SINE MIR -65 143 12 564 316 18 36 chr3 119432211 119432436 -98604722 - MIR SINE MIR -24 238 18 4462 81 16 4 chr3 119432970 119433985 -98603173 + MER11A LTR ERVK 1 1266 0 1959 123 7 10 chr3 119433985 119434294 -98602864 + HERVK11 LTR ERVK 1 308 -7645 2406 55 0 0 chr3 119434297 119434604 -98602554 + HERVK11 LTR ERVK 2257 2563 -5390 3955 92 2 31 chr3 119434704 119435289 -98601869 + HERVK11 LTR ERVK 2967 3534 -4419 * 20096 74 3 2 chr3 119435279 119437973 -98599185 + HERVK11 LTR ERVK 5256 7953 0 4693 54 20 3 chr3 119437974 119438988 -98598170 + MER11A LTR ERVK 2 1266 0 204 203 94 78 chr3 119439005 119439069 -98598089 - MIR SINE MIR -177 85 21 258 156 0 0 chr3 119439113 119439158 -98598000 + (TA)n Simple_repeat Simple_repeat 1 45 0 1142 291 16 21 chr3 119439918 119440354 -98596804 - LTR16A LTR ERVL -16 434 1 1092 201 147 54 chr3 119440425 119440848 -98596310 + MLT1C LTR MaLR 6 467 0 806 281 99 13 chr3 119440903 119441216 -98595942 + LTR33 LTR ERVL 169 508 -13 331 294 12 0 chr3 119441977 119442062 -98595096 - L2 LINE L2 -5 3308 3223 512 305 108 16 chr3 119442062 119442367 -98594791 - LTR16C LTR ERVL -1 490 158 3852 198 31 25 chr3 119442559 119443403 -98593755 + MER21B LTR ERV1 1 849 -14 647 285 77 53 chr3 119443451 119443869 -98593289 - L2 LINE L2 -71 3242 2815 184 277 62 15 chr3 119444235 119444300 -98592858 + MIR SINE MIR 85 152 -56 441 281 0 44 chr3 119445165 119445279 -98591879 + MIR3 SINE MIR 87 195 -13 384 97 0 0 chr3 119445776 119445838 -98591320 + (TC)n Simple_repeat Simple_repeat 2 63 0 219 125 0 0 chr3 119446360 119446400 -98590758 + (TC)n Simple_repeat Simple_repeat 1 40 0 25 83 0 0 chr3 119446420 119446480 -98590678 + AT_rich Low_complexity Low_complexity 1 60 0 226 335 147 35 chr3 119447204 119447517 -98589641 + L2 LINE L2 2620 2967 -347 28 48 0 0 chr3 119452080 119452122 -98585036 + AT_rich Low_complexity Low_complexity 1 42 0 2375 93 0 6 chr3 119452655 119452966 -98584192 - AluSc SINE Alu 0 309 1 413 285 57 0 chr3 119452971 119453094 -98584064 + MIR SINE MIR 83 212 -50 504 295 127 72 chr3 119454167 119454839 -98582319 - L2 LINE L2 -215 3057 2367 437 34 17 0 chr3 119455412 119455471 -98581687 + (CA)n Simple_repeat Simple_repeat 2 61 0 386 352 70 33 chr3 119455560 119455773 -98581385 + MIR SINE MIR 36 256 -6 298 313 99 24 chr3 119457395 119457606 -98579552 - L2 LINE L2 -5 3308 3082 250 170 0 19 chr3 119457668 119457721 -98579437 + CT-rich Low_complexity Low_complexity 5 56 0 1600 362 113 35 chr3 119457771 119459971 -98577187 - L2 LINE L2 -359 2955 586 349 203 25 0 chr3 119460000 119460079 -98577079 + MLT1A1 LTR MaLR 1 81 -347 1600 70 33 0 chr3 119460079 119460292 -98576866 - L1PA11 LINE L1 -1 6173 5954 2866 74 17 2 chr3 119460299 119460719 -98576439 - L1PA11 LINE L1 -495 5679 5254 578 248 10 40 chr3 119460853 119461051 -98576107 + MLT1A1 LTR MaLR 174 365 0 * 1004 212 10 5 chr3 119461051 119461246 -98575912 - MER58A DNA MER1_type -28 196 1 193 214 54 71 chr3 119461291 119461347 -98575811 - L3 LINE CR1 -467 1110 1056 483 270 87 4 chr3 119461437 119461678 -98575480 - L1MC5 LINE L1 -79 7882 7622 985 222 93 73 chr3 119461686 119462361 -98574797 - L1MC5 LINE L1 -366 7595 6907 388 259 86 7 chr3 119462400 119462539 -98574619 - L1M4 LINE L1 -891 6066 5917 478 343 81 11 chr3 119462685 119463032 -98574126 - L1MDb LINE L1 -5042 1367 997 3563 133 8 6 chr3 119463180 119463706 -98573452 - MER1A DNA MER1_type 0 527 1 1342 255 54 82 chr3 119463811 119464723 -98572435 - L1ME LINE L1 -4551 2408 1558 18640 25 1 0 chr3 119464727 119467705 -98569453 - L1PA2 LINE L1 0 6155 3176 3758 76 0 12 chr3 119467810 119468323 -98568835 - L1PA8 LINE L1 -1 6171 5665 31849 38 31 2 chr3 119468430 119472561 -98564597 - L1P LINE L1 -1892 4254 2 530 207 87 0 chr3 119472563 119472713 -98564445 - L1ME LINE L1 -5350 1509 1347 1046 200 101 73 chr3 119473216 119473571 -98563587 - MLT1A1 LTR MaLR 0 365 1 238 260 77 39 chr3 119473811 119473992 -98563166 - L1ME LINE L1 -6661 198 11 357 306 50 40 chr3 119474181 119474403 -98562755 - HAL1b LINE L1 -744 604 381 26 64 0 0 chr3 119474498 119474545 -98562613 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr3 119474788 119474809 -98562349 + AT_rich Low_complexity Low_complexity 1 21 0 30 69 0 0 chr3 119475843 119475901 -98561257 + AT_rich Low_complexity Low_complexity 1 58 0 474 372 10 5 chr3 119476048 119476244 -98560914 - L2 LINE L2 -2810 504 308 197 81 0 27 chr3 119476329 119476366 -98560792 + (TA)n Simple_repeat Simple_repeat 1 36 0 360 278 39 96 chr3 119476530 119476760 -98560398 + L1ME LINE L1 5595 5811 -310 1833 147 16 3 chr3 119477174 119477480 -98559678 + L1MC1 LINE L1 6014 6323 -10 241 180 0 0 chr3 119478569 119478619 -98558539 - Charlie8 DNA MER1_type -2276 141 92 22 0 0 0 chr3 119478721 119478743 -98558415 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr3 119479590 119479622 -98557536 + AT_rich Low_complexity Low_complexity 1 32 0 195 100 0 0 chr3 119481065 119481095 -98556063 + (TCC)n Simple_repeat Simple_repeat 2 31 0 181 73 24 24 chr3 119481515 119481556 -98555602 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 212 308 62 0 chr3 119481574 119481639 -98555519 + L2 LINE L2 3204 3272 0 1165 207 19 0 chr3 119482362 119482618 -98554540 + LTR43 LTR ERV1 176 436 -166 214 289 132 26 chr3 119483746 119483822 -98553336 - L2 LINE L2 -203 3069 2986 1285 166 26 0 chr3 119484566 119484795 -98552363 + MER46A DNA MER2_type 2 236 0 29 47 0 0 chr3 119485069 119485112 -98552046 + AT_rich Low_complexity Low_complexity 1 43 0 1884 151 0 36 chr3 119485114 119485419 -98551739 - AluJb SINE Alu -18 294 1 272 307 11 23 chr3 119485482 119485570 -98551588 + MIR SINE MIR 5 91 -171 720 172 41 12 chr3 119485571 119485740 -98551418 + MER96B DNA MER1_type? 2 175 -242 1011 168 65 119 chr3 119485902 119486288 -98550870 - MLT1A1 LTR MaLR 0 365 1 24 0 0 0 chr3 119486830 119486854 -98550304 + AT_rich Low_complexity Low_complexity 1 24 0 184 271 86 0 chr3 119486997 119487067 -98550091 + MIR SINE MIR 174 249 -13 256 256 44 100 chr3 119488282 119488435 -98548723 + MER5B DNA MER1_type 27 162 -16 338 164 109 82 chr3 119488752 119488862 -98548296 - MER96 DNA MER1_type? -1 174 62 182 338 27 0 chr3 119489259 119489333 -98547825 + MIR SINE MIR 175 250 -12 2751 121 16 21 chr3 119489791 119490221 -98546937 - MSTC LTR MaLR 0 428 1 268 264 0 28 chr3 119490972 119491044 -98546114 + C-rich Low_complexity Low_complexity 4 73 0 912 256 74 11 chr3 119492142 119492411 -98544747 - LTR16C LTR ERVL 0 491 206 2257 95 86 0 chr3 119492892 119493217 -98543941 - THE1A LTR MaLR 0 355 3 11528 106 1 1 chr3 119493219 119494798 -98542360 - THE1A-int LTR MaLR 0 1580 2 2649 102 3 0 chr3 119494799 119495153 -98542005 - THE1A LTR MaLR 0 355 1 283 306 45 18 chr3 119495393 119495504 -98541654 + L2 LINE L2 3170 3283 -30 43 0 0 0 chr3 119495511 119495554 -98541604 + AT_rich Low_complexity Low_complexity 1 43 0 653 255 45 33 chr3 119496266 119496488 -98540670 + MIR SINE MIR 38 262 0 2059 117 63 23 chr3 119496827 119497177 -98539981 - THE1B LTR MaLR 0 364 1 9630 93 16 106 chr3 119497177 119498915 -98538243 - THE1B-int LTR MaLR 0 1580 1 480 118 0 13 chr3 119498915 119498991 -98538167 - THE1B LTR MaLR 0 375 301 * 639 124 127 7 chr3 119498984 119499122 -98538036 - THE1B LTR MaLR -192 183 1 2438 78 3 0 chr3 119499269 119499578 -98537580 - AluY SINE Alu -1 310 1 336 328 73 11 chr3 119499936 119500113 -98537045 - MIR SINE MIR -42 220 33 419 328 89 17 chr3 119500118 119500353 -98536805 + MIR SINE MIR 1 252 -10 330 341 108 11 chr3 119500454 119500630 -98536528 + MIR SINE MIR 21 213 -49 2375 96 0 0 chr3 119501421 119501724 -98535434 + AluSc SINE Alu 1 303 -6 252 281 7 39 chr3 119502899 119503052 -98534106 + CT-rich Low_complexity Low_complexity 2 149 0 287 163 50 0 chr3 119506016 119506096 -98531062 + (TA)n Simple_repeat Simple_repeat 2 85 0 2218 119 0 0 chr3 119506208 119506551 -98530607 + AluSx SINE Alu 1 343 0 23 54 0 0 chr3 119507736 119507773 -98529385 + AT_rich Low_complexity Low_complexity 1 37 0 196 182 136 0 chr3 119507776 119507820 -98529338 + MIR SINE MIR 30 79 -129 2390 46 0 0 chr3 119509286 119509596 -98527562 - AluY SINE Alu 0 310 1 21 36 0 0 chr3 119509683 119509711 -98527447 + AT_rich Low_complexity Low_complexity 1 28 0 2158 128 0 3 chr3 119509766 119510063 -98527095 + AluSq SINE Alu 1 296 -17 1799 173 0 10 chr3 119514046 119514346 -98522812 + AluJb SINE Alu 1 297 -15 436 289 148 0 chr3 119514829 119514978 -98522180 - MER5A DNA MER1_type -12 177 7 856 230 80 33 chr3 119515624 119515837 -98521321 - MER58A DNA MER1_type 0 224 2 244 357 96 36 chr3 119517237 119517486 -98519672 + L2 LINE L2 3009 3272 0 562 258 19 13 chr3 119517800 119517959 -98519199 - L1MB8 LINE L1 0 6178 6019 385 292 55 36 chr3 119518241 119518460 -98518698 - L1MB8 LINE L1 -376 5745 5523 494 248 15 23 chr3 119519977 119520110 -98517048 - L2 LINE L2 -2 3311 3180 237 191 24 83 chr3 119520114 119520198 -98516960 + L1MC4 LINE L1 6636 6714 -1328 240 35 0 0 chr3 119520218 119520247 -98516911 + (CA)n Simple_repeat Simple_repeat 2 30 0 1133 248 192 21 chr3 119520252 119520872 -98516286 - L2 LINE L2 -165 3148 2417 762 208 79 83 chr3 119521111 119521351 -98515807 - MIR SINE MIR 0 262 24 2147 120 13 3 chr3 119521876 119522184 -98514974 + AluSx SINE Alu 1 311 -1 1324 168 9 18 chr3 119524198 119524418 -98512740 - MER20 DNA MER1_type 0 219 2 561 244 0 0 chr3 119524765 119524884 -98512274 + L2 LINE L2 3193 3311 -2 180 347 51 45 chr3 119525041 119525217 -98511941 + L2 LINE L2 2877 3053 -219 2038 105 3 22 chr3 119525901 119526215 -98510943 - AluSx SINE Alu -4 308 1 895 136 8 0 chr3 119526215 119526347 -98510811 - AluSc SINE Alu -175 134 2 1009 223 0 24 chr3 119526558 119526764 -98510394 + MLT1A2 LTR MaLR 174 374 0 1277 163 101 0 chr3 119526764 119527021 -98510137 + MLT1A2-int LTR MaLR 1 283 -1088 2152 131 0 0 chr3 119528685 119528976 -98508182 - AluSg SINE Alu -19 291 1 292 203 17 0 chr3 119528982 119529041 -98508117 + MLT1A2-int LTR MaLR 676 735 -1000 1916 234 36 36 chr3 119529119 119529310 -98507848 + MLT1A2-int LTR MaLR 1287 1477 -258 180 0 0 0 chr3 119529310 119529330 -98507828 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1916 234 36 36 chr3 119529330 119529583 -98507575 + MLT1A2-int LTR MaLR 1476 1731 -4 591 178 99 20 chr3 119529588 119529740 -98507418 + MLT1A2 LTR MaLR 8 171 -219 1288 166 40 6 chr3 119529769 119530148 -98507010 + L1M4 LINE L1 5086 5478 -696 1039 305 25 3 chr3 119530464 119530746 -98506412 - LTR16C LTR ERVL -65 426 139 6978 42 4 0 chr3 119530762 119531554 -98505604 + L1PA5 LINE L1 5358 6152 -2 222 233 0 47 chr3 119531864 119531950 -98505208 + (CCCG)n Simple_repeat Simple_repeat 2 83 0 1946 222 179 14 chr3 119532865 119533352 -98503806 - MLT1F1 LTR MaLR 0 567 1 315 224 145 0 chr3 119533428 119533504 -98503654 - MIR SINE MIR -109 153 67 251 317 13 28 chr3 119534081 119534349 -98502809 + C-rich Low_complexity Low_complexity 1 264 0 207 139 0 0 chr3 119537221 119537257 -98499901 + (TG)n Simple_repeat Simple_repeat 2 37 0 1114 275 64 58 chr3 119537469 119537935 -98499223 + L2 LINE L2 2845 3313 0 300 313 0 12 chr3 119538246 119538329 -98498829 + MIR SINE MIR 23 104 -158 7427 182 111 37 chr3 119538330 119539965 -98497193 + MER52A LTR ERV1 1 1755 0 216 337 32 0 chr3 119539972 119540067 -98497091 + MIR SINE MIR 111 208 -54 2375 68 47 3 chr3 119540212 119540508 -98496650 - AluY SINE Alu -2 309 1 21 0 0 0 chr3 119540605 119540626 -98496532 + AT_rich Low_complexity Low_complexity 1 21 0 402 272 283 18 chr3 119541711 119541983 -98495175 + L2 LINE L2 2928 3271 -1 294 210 16 0 chr3 119544006 119544068 -98493090 - MIR SINE MIR -18 244 182 579 260 0 0 chr3 119545030 119545157 -98492001 + L2 LINE L2 3187 3313 0 248 254 169 0 chr3 119545238 119545309 -98491849 + MIR3 SINE MIR 112 194 -14 183 179 51 0 chr3 119546084 119546123 -98491035 - L2 LINE L2 -2 3311 3271 440 309 179 30 chr3 119546143 119546444 -98490714 - L2 LINE L2 -14 3299 2954 936 282 81 52 chr3 119547079 119547659 -98489499 + L1ME3A LINE L1 4809 5371 -799 2508 58 6 19 chr3 119547659 119547970 -98489188 + AluY SINE Alu 1 307 -4 936 282 81 52 chr3 119547970 119548518 -98488640 + L1ME3A LINE L1 5371 5948 -222 23271 176 18 18 chr3 119548778 119554534 -98482624 + L1PA11 LINE L1 787 7356 -256 3887 151 26 10 chr3 119554535 119555150 -98482008 - Tigger1 DNA MER2_type -1739 679 55 1358 278 52 4 chr3 119556821 119557282 -98479876 + Charlie4a DNA MER1_type 26 508 0 22 0 0 0 chr3 119557326 119557348 -98479810 + AT_rich Low_complexity Low_complexity 1 22 0 260 125 0 36 chr3 119558382 119558438 -98478720 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 282 277 214 0 chr3 119558940 119559052 -98478106 - L2 LINE L2 -4 3268 3133 215 167 227 0 chr3 119559255 119559321 -98477837 - MIR SINE MIR -108 154 74 1719 192 3 52 chr3 119560318 119560704 -98476454 + MLT1B LTR MaLR 24 390 0 257 308 185 0 chr3 119560720 119560850 -98476308 + MIR SINE MIR 85 238 -24 286 253 55 11 chr3 119561593 119561684 -98475474 - MIR SINE MIR -23 239 145 1076 68 0 0 chr3 119561770 119561902 -98475256 + AluY SINE Alu 1 132 -179 2116 128 7 0 chr3 119562183 119562473 -98474685 + AluSp SINE Alu 5 296 -17 23 0 0 0 chr3 119562950 119562973 -98474185 + AT_rich Low_complexity Low_complexity 1 23 0 328 267 0 13 chr3 119565448 119565523 -98471635 - L2 LINE L2 -1 3271 3198 370 278 102 0 chr3 119566280 119566456 -98470702 + L1PB1 LINE L1 6 199 -6664 * 13054 191 19 28 chr3 119566453 119569777 -98467381 + L1PB1 LINE L1 652 4145 -2722 1983 158 0 0 chr3 119569777 119570080 -98467078 + AluSg SINE Alu 6 308 -2 13054 191 19 28 chr3 119570080 119572778 -98464380 + L1PB1 LINE L1 4145 6866 -1 435 283 59 5 chr3 119573422 119573609 -98463549 + L1MC4a LINE L1 5696 5892 -1916 4415 122 16 43 chr3 119573696 119574494 -98462664 + L1PA15 LINE L1 5389 6165 0 217 225 217 85 chr3 119575000 119575129 -98462029 - MIR3 SINE MIR -52 156 11 506 227 65 103 chr3 119577934 119578119 -98459039 + MER5B DNA MER1_type 1 178 0 504 223 10 0 chr3 119578173 119578276 -98458882 + MLT1F LTR MaLR 1 104 -438 430 198 158 0 chr3 119578279 119578380 -98458778 - MER96 DNA MER1_type? -3 172 56 1565 194 33 76 chr3 119578419 119578549 -98458609 + MLT1F LTR MaLR 139 273 -269 2452 74 0 6 chr3 119578549 119578860 -98458298 + AluY SINE Alu 1 309 -2 1565 194 33 76 chr3 119578860 119579151 -98458007 + MLT1F LTR MaLR 273 542 0 297 306 194 7 chr3 119580487 119580631 -98456527 - MIR3 SINE MIR -7 201 31 294 29 0 0 chr3 119580724 119580759 -98456399 - U2 snRNA snRNA -153 35 1 400 296 0 6 chr3 119582621 119582783 -98454375 + L1MC4a LINE L1 3806 3966 -2180 232 173 0 27 chr3 119582853 119582928 -98454230 + (TA)n Simple_repeat Simple_repeat 2 74 0 318 232 159 22 chr3 119582978 119583116 -98454042 + L1MC4a LINE L1 5116 5272 -874 2028 257 24 15 chr3 119583126 119583868 -98453290 + L1MC4a LINE L1 5256 6004 -1804 245 300 99 17 chr3 119583881 119584114 -98453044 + L1MC4a LINE L1 6044 6295 -1513 2154 108 11 0 chr3 119584153 119584430 -98452728 + AluSg SINE Alu 14 293 -17 443 278 56 43 chr3 119584557 119584791 -98452367 + L1MC4a LINE L1 6378 6614 -1194 315 211 26 0 chr3 119584827 119584903 -98452255 - L1MC4 LINE L1 -599 7443 7366 2168 271 36 45 chr3 119584931 119585813 -98451345 + L1MC4 LINE L1 6662 7535 -507 2772 223 73 6 chr3 119585813 119586632 -98450526 - L1 LINE L1 -2416 3730 2857 5667 208 14 4 chr3 119586632 119587957 -98449201 + L1 LINE L1 3742 5079 -1067 1933 141 136 21 chr3 119587959 119588341 -98448817 - MSTA LTR MaLR -2 426 1 8933 144 11 30 chr3 119588350 119589948 -98447210 - MSTA-int LTR MaLR -10 1570 3 1612 165 112 73 chr3 119589950 119590362 -98446796 - MSTA LTR MaLR 0 428 1 4818 144 53 17 chr3 119590362 119590756 -98446402 + L1PA16 LINE L1 5075 5453 -713 2272 88 0 7 chr3 119590756 119591053 -98446105 - AluY SINE Alu -16 295 1 4818 144 53 17 chr3 119591053 119591682 -98445476 + L1PA16 LINE L1 5453 6166 0 665 239 139 29 chr3 119591706 119592016 -98445142 + L1MC4 LINE L1 7546 7889 -153 192 231 0 0 chr3 119592031 119592083 -98445075 + (CATA)n Simple_repeat Simple_repeat 1 52 0 278 192 46 126 chr3 119592086 119592176 -98444982 + L1MC4 LINE L1 7904 7979 -63 321 26 0 0 chr3 119592176 119592214 -98444944 + (TG)n Simple_repeat Simple_repeat 2 39 0 278 192 46 126 chr3 119592214 119592274 -98444884 + L1MC4 LINE L1 7979 8042 0 5245 185 86 40 chr3 119592534 119593882 -98443276 + MER52A LTR ERV1 379 1755 0 254 26 53 0 chr3 119594384 119594422 -98442736 + (TAAAAA)n Simple_repeat Simple_repeat 2 41 0 6717 24 1 5 chr3 119594966 119595805 -98441353 - L1PA2 LINE L1 0 6155 5320 323 320 32 32 chr3 119596002 119596158 -98441000 + MER5A DNA MER1_type 27 182 -7 24 32 0 0 chr3 119596686 119596717 -98440441 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr3 119596873 119596894 -98440264 + GC_rich Low_complexity Low_complexity 1 21 0 31 76 0 0 chr3 119596997 119597063 -98440095 + GC_rich Low_complexity Low_complexity 1 66 0 278 182 55 0 chr3 119597256 119597311 -98439847 - MIR SINE MIR -115 147 90 21 71 0 0 chr3 119600026 119600068 -98437090 + AT_rich Low_complexity Low_complexity 1 42 0 716 204 51 13 chr3 119600757 119600914 -98436244 - FRAM SINE Alu -13 163 1 28 0 0 0 chr3 119601500 119601528 -98435630 + AT_rich Low_complexity Low_complexity 1 28 0 1267 232 150 35 chr3 119601650 119602103 -98435055 + MLT1D LTR MaLR 1 505 0 25 65 0 0 chr3 119602149 119602195 -98434963 + AT_rich Low_complexity Low_complexity 1 46 0 405 263 91 0 chr3 119602850 119603025 -98434133 + L2 LINE L2 1720 1910 -1404 2346 86 3 3 chr3 119603065 119603369 -98433789 + AluSq SINE Alu 1 304 -9 2710 165 38 13 chr3 119603372 119603978 -98433180 + L1PA16 LINE L1 5325 5945 -221 327 49 0 0 chr3 119604478 119604519 -98432639 + (TG)n Simple_repeat Simple_repeat 2 42 0 589 208 81 9 chr3 119607326 119607471 -98429687 + MIR SINE MIR 40 192 -63 25 31 0 0 chr3 119608011 119608043 -98429115 + AT_rich Low_complexity Low_complexity 1 32 0 357 256 45 0 chr3 119608263 119608363 -98428795 + MER5A DNA MER1_type 4 106 -83 305 176 78 0 chr3 119608471 119608522 -98428636 - L2 LINE L2 -9 3263 3209 2276 90 3 3 chr3 119608735 119609034 -98428124 - AluSc SINE Alu -10 299 1 593 284 121 0 chr3 119613540 119613755 -98423403 - MIR SINE MIR -1 261 21 261 236 28 0 chr3 119613901 119613973 -98423185 + (TA)n Simple_repeat Simple_repeat 2 75 0 271 336 25 0 chr3 119614703 119614822 -98422336 + MIR3 SINE MIR 78 199 -9 794 232 33 77 chr3 119616749 119617002 -98420156 + MIR SINE MIR 14 262 0 202 203 40 27 chr3 119617599 119617673 -98419485 + (CA)n Simple_repeat Simple_repeat 1 75 0 234 259 19 0 chr3 119619006 119619060 -98418098 - L2 LINE L2 -2 3270 3216 208 364 44 39 chr3 119619295 119619501 -98417657 - L2 LINE L2 -370 2944 2738 711 355 31 62 chr3 119619617 119620068 -98417090 - L2 LINE L2 -1 3271 2835 2304 104 0 0 chr3 119620102 119620399 -98416759 + AluSc SINE Alu 1 297 -12 2284 117 0 0 chr3 119620424 119620724 -98416434 + AluSx SINE Alu 1 300 -12 436 301 168 42 chr3 119620753 119621139 -98416019 - L2 LINE L2 -569 2745 2311 231 381 90 0 chr3 119623356 119623490 -98413668 - L2 LINE L2 -4 3268 3123 1817 149 54 7 chr3 119623933 119624229 -98412929 - AluJo SINE Alu -2 310 1 433 294 25 0 chr3 119624311 119624430 -98412728 + MIR SINE MIR 49 170 -92 1702 260 111 19 chr3 119624492 119625007 -98412151 - MER77 LTR ERV1 -7 598 37 194 357 68 34 chr3 119625352 119625587 -98411571 - L2 LINE L2 -182 3090 2848 526 286 39 0 chr3 119626204 119626358 -98410800 - MIR SINE MIR -10 252 93 244 368 58 32 chr3 119627547 119627702 -98409456 - MIR3 SINE MIR -6 202 44 627 322 33 5 chr3 119627974 119628185 -98408973 + MIR SINE MIR 33 249 -13 2387 41 10 10 chr3 119628300 119628595 -98408563 - AluY SINE Alu -16 295 1 180 0 0 0 chr3 119631816 119631836 -98405322 + (A)n Simple_repeat Simple_repeat 1 20 0 1458 243 44 34 chr3 119631918 119632613 -98404545 - Tigger7 DNA MER2_type 0 2587 2 27 29 0 0 chr3 119633084 119633118 -98404040 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr3 119634532 119634554 -98402604 + AT_rich Low_complexity Low_complexity 1 22 0 887 241 82 4 chr3 119634813 119635045 -98402113 - MIR SINE MIR 0 262 13 388 182 9 64 chr3 119635448 119635558 -98401600 - MER106B DNA MER1_type -7 1052 949 415 218 94 112 chr3 119636692 119636862 -98400296 - MER5B DNA MER1_type -9 169 3 558 188 106 53 chr3 119637815 119637985 -98399173 - MIR SINE MIR 0 262 84 286 324 126 43 chr3 119638369 119638879 -98398279 - L2 LINE L2 -733 2581 2030 186 43 0 0 chr3 119639830 119639853 -98397305 + (TCCTG)n Simple_repeat Simple_repeat 5 27 0 2710 152 12 31 chr3 119641212 119641470 -98395688 - L1MA5 LINE L1 0 6300 6054 2082 124 7 13 chr3 119641470 119641769 -98395389 - AluSx SINE Alu -15 297 1 2710 152 12 31 chr3 119641769 119641992 -98395166 - L1MA5 LINE L1 -246 6054 5828 1650 231 52 36 chr3 119642522 119643403 -98393755 + L1ME2 LINE L1 4912 6154 -10 641 162 30 3 chr3 119643698 119643934 -98393224 - AluJb SINE Alu -3 309 1 306 0 0 0 chr3 119645682 119645716 -98391442 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 405 291 123 32 chr3 119651392 119651612 -98385546 + MIR SINE MIR 7 246 -16 201 129 0 0 chr3 119651868 119651899 -98385259 + (TC)n Simple_repeat Simple_repeat 2 32 0 183 42 0 0 chr3 119651901 119651925 -98385233 + (TG)n Simple_repeat Simple_repeat 2 25 0 561 225 81 2 chr3 119652193 119652513 -98384645 - MER113 DNA MER1_type? -5 516 115 413 254 124 23 chr3 119654066 119654243 -98382915 + L3 LINE CR1 1067 1261 -316 326 244 228 0 chr3 119654282 119654409 -98382749 - MIR3 SINE MIR -21 187 32 181 357 0 0 chr3 119654456 119654512 -98382646 + L3 LINE CR1 1313 1368 -209 2652 172 64 19 chr3 119654589 119654861 -98382297 - MLT1D LTR MaLR 0 505 200 2278 65 3 10 chr3 119654861 119655152 -98382006 - AluY SINE Alu -2 309 21 2652 172 64 19 chr3 119655152 119655362 -98381796 - MLT1D LTR MaLR -305 200 1 291 315 146 0 chr3 119655410 119655499 -98381659 + MIR SINE MIR 48 149 -113 206 300 75 12 chr3 119655617 119655697 -98381461 + L3 LINE CR1 1483 1567 -10 785 179 16 0 chr3 119657797 119657920 -98379238 + FLAM_C SINE Alu 2 126 -17 261 287 81 11 chr3 119658178 119658265 -98378893 - MIR SINE MIR -146 116 24 265 270 90 11 chr3 119659272 119659361 -98377797 - MIR SINE MIR -159 103 8 325 248 49 50 chr3 119659845 119659992 -98377166 - MIR SINE MIR -69 139 41 2961 237 22 33 chr3 119661621 119662683 -98374475 - L1 LINE L1 -2347 3799 2750 190 349 71 40 chr3 119664113 119664311 -98372847 - L2 LINE L2 -1122 2192 1989 216 173 27 133 chr3 119664446 119664521 -98372637 - MIR SINE MIR -111 151 85 1423 224 130 70 chr3 119664755 119665357 -98371801 - MLT1E1 LTR MaLR -16 638 1 616 209 29 44 chr3 119666200 119666406 -98370752 + MLT2D LTR ERVL 1 203 -211 243 271 93 21 chr3 119667506 119667646 -98369512 - MIR SINE MIR -49 213 64 887 167 127 32 chr3 119668145 119668300 -98368858 + L1PB4 LINE L1 5908 6092 -64 2724 194 71 41 chr3 119668300 119669006 -98368152 + LTR8A LTR ERV1 1 727 0 887 167 127 32 chr3 119669006 119669071 -98368087 + L1PB4 LINE L1 6092 6149 -7 678 270 14 30 chr3 119670598 119670629 -98366529 + L1MC4a LINE L1 5681 5711 -450 2264 98 7 3 chr3 119670629 119670925 -98366233 - AluSq SINE Alu -14 299 3 678 270 14 30 chr3 119670925 119671157 -98366001 + L1MC4a LINE L1 5711 5822 -339 1007 220 215 14 chr3 119671273 119671719 -98365439 - L1MC/D LINE L1 -2019 5789 5254 1592 153 4 0 chr3 119671773 119672008 -98365150 - AluJb SINE Alu -49 263 28 240 326 0 0 chr3 119672147 119672233 -98364925 + L1PA15-16 LINE L1 2284 2369 -841 21 57 0 0 chr3 119672555 119672590 -98364568 + AT_rich Low_complexity Low_complexity 1 35 0 2297 171 24 6 chr3 119672627 119673096 -98364062 + L1MB1 LINE L1 5470 5946 -222 962 133 44 6 chr3 119673088 119673269 -98363889 + L1PA15-16 LINE L1 2380 2567 -4282 * 2094 110 7 3 chr3 119674901 119675191 -98361967 + AluSx SINE Alu 1 291 -21 180 0 0 0 chr3 119675196 119675216 -98361942 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 23 0 0 0 chr3 119676064 119676087 -98361071 + GC_rich Low_complexity Low_complexity 1 23 0 33 87 0 0 chr3 119676157 119676203 -98360955 + GC_rich Low_complexity Low_complexity 1 46 0 207 310 109 58 chr3 119676442 119676616 -98360542 - MER5A DNA MER1_type 0 189 7 302 115 19 0 chr3 119676844 119676896 -98360262 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 191 356 0 0 chr3 119676921 119676966 -98360192 - L2 LINE L2 -86 3186 3142 644 221 106 26 chr3 119677207 119677510 -98359648 - MER2 DNA MER2_type -1 344 18 636 325 70 12 chr3 119678420 119678663 -98358495 - MIR SINE MIR 0 262 6 342 0 0 0 chr3 119679276 119679314 -98357844 + (CA)n Simple_repeat Simple_repeat 2 39 0 297 51 0 0 chr3 119679314 119679353 -98357805 + (CAT)n Simple_repeat Simple_repeat 1 39 0 226 297 108 0 chr3 119680041 119680115 -98357043 - L2 LINE L2 -5 3267 3186 3703 190 32 12 chr3 119680864 119681676 -98355482 + Tigger6a DNA MER2_type 24 851 -232 1089 141 0 0 chr3 119681973 119682136 -98355022 - AluSq SINE Alu -17 296 134 453 62 0 0 chr3 119682142 119682207 -98354951 + (TATG)n Simple_repeat Simple_repeat 2 66 0 2200 105 0 10 chr3 119682207 119682494 -98354664 - AluSx SINE Alu -26 286 1 449 207 66 31 chr3 119682538 119682818 -98354340 + MER67C LTR ERV1 15 303 -402 8739 45 31 4 chr3 119683171 119684425 -98352733 + L1P LINE L1 3684 4971 -1175 1493 218 169 9 chr3 119684714 119685287 -98351871 - L1 LINE L1 -2416 3730 3066 298 331 20 7 chr3 119735652 119735800 -98301358 - L1ME4a LINE L1 0 6121 5972 522 309 0 23 chr3 119735845 119736020 -98301138 - L2 LINE L2 -706 2608 2438 1044 227 25 54 chr3 119736052 119736329 -98300829 - Tigger2 DNA MER2_type 0 2718 2450 267 243 14 0 chr3 119736331 119736401 -98300757 - L1PA7 LINE L1 -16 6138 6068 641 264 156 4 chr3 119737160 119737179 -98299979 + L1MC4 LINE L1 7592 7607 -435 207 0 0 0 chr3 119737179 119737202 -98299956 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 641 264 156 4 chr3 119737202 119737451 -98299707 + L1MC4 LINE L1 7607 7901 -141 226 135 77 19 chr3 119737453 119737505 -98299653 + L1MC4 LINE L1 7986 8040 -2 311 257 91 57 chr3 119737586 119737761 -98299397 - L1 LINE L1 -1921 4225 4045 272 111 0 0 chr3 119737812 119737848 -98299310 + U2 snRNA snRNA 1 36 -152 216 0 0 0 chr3 119737931 119737955 -98299203 + (T)n Simple_repeat Simple_repeat 1 24 0 1762 171 7 14 chr3 119737957 119738249 -98298909 + AluJo SINE Alu 2 291 -21 21 0 0 0 chr3 119738253 119738274 -98298884 + AT_rich Low_complexity Low_complexity 1 21 0 633 249 73 13 chr3 119738274 119738507 -98298651 - L1 LINE L1 -2212 3934 3688 416 297 88 16 chr3 119738650 119738832 -98298326 + MIR SINE MIR 61 255 -7 31 0 0 0 chr3 119739063 119739094 -98298064 + AT_rich Low_complexity Low_complexity 1 31 0 1413 94 0 21 chr3 119739099 119739290 -98297868 - AluSg/x SINE Alu -21 291 105 544 274 100 12 chr3 119739935 119740176 -98296982 + MIR SINE MIR 1 262 0 1803 162 6 38 chr3 119740250 119740565 -98296593 - L1MC1 LINE L1 -13 6320 6016 4011 174 95 22 chr3 119740573 119741390 -98295768 - L1MB8 LINE L1 0 6178 5287 1705 175 3 7 chr3 119741390 119741682 -98295476 - AluJo SINE Alu -21 291 1 4011 174 95 22 chr3 119741682 119741825 -98295333 - L1MB8 LINE L1 -891 5287 5156 220 324 108 36 chr3 119741990 119742240 -98294918 + L2 LINE L2 1442 1709 -1605 427 324 103 59 chr3 119742262 119742669 -98294489 + L2 LINE L2 2271 2695 -619 282 323 23 31 chr3 119742740 119742870 -98294288 + MIR SINE MIR 74 202 -60 2473 84 0 7 chr3 119743064 119743373 -98293785 + AluSg SINE Alu 2 308 -2 362 132 0 236 chr3 119744674 119744818 -98292340 - MLT2C2 LTR ERVL -7 457 348 412 318 14 7 chr3 119745252 119745400 -98291758 - L2 LINE L2 -6 3307 3159 1684 162 13 134 chr3 119746639 119747035 -98290123 + MER7A DNA MER2_type 1 346 0 182 62 31 0 chr3 119747148 119747180 -98289978 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 1633 167 18 18 chr3 119747184 119747459 -98289699 - AluJo SINE Alu -37 275 1 2921 134 14 45 chr3 119747650 119747855 -98289303 + L1PB3 LINE L1 5664 5874 -280 2528 58 0 0 chr3 119747855 119748149 -98289009 - AluY SINE Alu -17 294 1 2921 134 14 45 chr3 119748149 119748449 -98288709 + L1PB3 LINE L1 5874 6153 -1 1268 201 22 4 chr3 119748520 119748749 -98288409 + AluJo SINE Alu 49 281 -31 2488 76 0 0 chr3 119748902 119749205 -98287953 + AluY SINE Alu 1 303 -8 216 67 0 0 chr3 119750254 119750284 -98286874 + (TC)n Simple_repeat Simple_repeat 1 30 0 186 145 60 12 chr3 119750285 119750368 -98286790 + (TA)n Simple_repeat Simple_repeat 2 88 0 303 28 0 0 chr3 119750742 119750778 -98286380 + (CA)n Simple_repeat Simple_repeat 2 37 0 24 77 0 0 chr3 119751048 119751100 -98286058 + AT_rich Low_complexity Low_complexity 1 52 0 2143 116 14 0 chr3 119751578 119751871 -98285287 + AluSp SINE Alu 1 297 -16 203 338 26 66 chr3 119751876 119751943 -98285215 - MIR3 SINE MIR -63 145 77 2227 117 37 37 chr3 119751943 119752318 -98284840 - THE1C LTR MaLR 0 375 1 203 338 26 66 chr3 119752318 119752401 -98284757 - MIR3 SINE MIR -131 77 1 1598 136 102 159 chr3 119752668 119753147 -98284011 - LTR47A LTR ERVL 0 452 1 538 191 15 7 chr3 119753385 119753521 -98283637 + CT-rich Low_complexity Low_complexity 1 137 0 1738 147 30 13 chr3 119753618 119753918 -98283240 - AluJo SINE Alu -5 307 3 271 289 193 9 chr3 119754318 119754432 -98282726 + MIR SINE MIR 20 154 -108 947 299 79 35 chr3 119754723 119755159 -98281999 - L2 LINE L2 -21 3292 2877 1969 170 3 0 chr3 119755159 119755470 -98281688 + AluJb SINE Alu 1 312 0 947 299 79 35 chr3 119755470 119755580 -98281578 - L2 LINE L2 -436 2877 1596 6823 63 8 4 chr3 119755648 119756478 -98280680 + L1PA8 LINE L1 5337 6170 -2 215 393 48 0 chr3 119756597 119756742 -98280416 - MIR SINE MIR -41 221 70 1765 120 0 0 chr3 119759904 119760138 -98277020 - AluSq SINE Alu -79 234 1 689 181 111 18 chr3 119760404 119760575 -98276583 + MER20 DNA MER1_type 3 189 -30 370 227 41 79 chr3 119760795 119760961 -98276197 - MIR3 SINE MIR -1 207 47 225 251 44 169 chr3 119763527 119763710 -98273448 - MIR3 SINE MIR -41 167 8 1994 123 16 13 chr3 119764011 119764321 -98272837 - AluSx SINE Alu -1 311 1 378 0 0 0 chr3 119764934 119764976 -98272182 + (TG)n Simple_repeat Simple_repeat 2 43 0 448 221 84 114 chr3 119765401 119765697 -98271461 - L1MC5 LINE L1 -49 7912 7609 1892 152 3 13 chr3 119765697 119766006 -98271152 - AluJb SINE Alu -6 306 1 448 221 84 114 chr3 119766006 119766025 -98271133 - L1MC5 LINE L1 -352 7609 7591 1557 167 0 67 chr3 119766025 119766325 -98270833 - AluJo SINE Alu -32 280 1 448 221 84 114 chr3 119766325 119766588 -98270570 - L1MC5 LINE L1 -370 7591 7350 195 129 0 0 chr3 119766627 119766658 -98270500 + (TA)n Simple_repeat Simple_repeat 2 32 0 234 150 0 0 chr3 119767461 119767501 -98269657 + (A)n Simple_repeat Simple_repeat 1 40 0 270 73 0 0 chr3 119767697 119767738 -98269420 + (TG)n Simple_repeat Simple_repeat 2 42 0 1736 152 22 35 chr3 119769370 119769686 -98267472 + AluJb SINE Alu 1 312 0 333 351 53 15 chr3 119772314 119772445 -98264713 + L2 LINE L2 3121 3256 -16 710 333 34 3 chr3 119772494 119772788 -98264370 - MLT1I LTR MaLR -104 305 3 1220 94 18 12 chr3 119773163 119773334 -98263824 - AluSp SINE Alu -21 292 121 13652 139 30 77 chr3 119773506 119773772 -98263386 - Tigger2 DNA MER2_type 0 2718 2441 14898 73 11 1 chr3 119773772 119776543 -98260615 - L1PA7 LINE L1 -2 6152 3359 13652 139 30 77 chr3 119776543 119779127 -98258031 - Tigger2 DNA MER2_type -277 2441 1 331 270 63 11 chr3 119779232 119779406 -98257752 - L1ME4a LINE L1 -234 5887 5705 292 261 83 33 chr3 119783392 119783539 -98253619 - LTR37B LTR ERV1 -83 385 226 1248 93 132 5 chr3 119783539 119783743 -98253415 - MER30 DNA MER1_type 0 230 1 292 261 83 33 chr3 119783743 119783775 -98253383 - LTR37B LTR ERV1 -242 226 197 250 239 14 14 chr3 119783908 119783979 -98253179 - LTR37B LTR ERV1 -333 135 65 407 270 43 82 chr3 119784544 119784981 -98252177 - MER31-int LTR ERV1 -1136 3800 3381 24 0 0 0 chr3 119785348 119785372 -98251786 + AT_rich Low_complexity Low_complexity 1 24 0 272 100 0 0 chr3 119786515 119786555 -98250603 - MER4E LTR ERV1 -73 706 667 1984 153 0 3 chr3 119786619 119786906 -98250252 + AluJb SINE Alu 1 286 -26 579 168 48 0 chr3 119787683 119787808 -98249350 - LTR37B LTR ERV1 0 468 338 21 0 0 0 chr3 119788036 119788057 -98249101 + AT_rich Low_complexity Low_complexity 1 21 0 3444 125 13 13 chr3 119788388 119788915 -98248243 + MER1A DNA MER1_type 1 527 0 298 321 9 18 chr3 119789546 119789655 -98247503 + L2 LINE L2 3163 3270 -2 25 0 0 0 chr3 119790559 119790584 -98246574 + AT_rich Low_complexity Low_complexity 1 25 0 253 175 93 62 chr3 119790901 119790998 -98246160 - Charlie5 DNA MER1_type -41 2571 2472 7105 33 4 1 chr3 119791077 119792007 -98245151 - L1PA2 LINE L1 0 6155 5254 300 158 0 0 chr3 119792127 119792184 -98244974 + (TG)n Simple_repeat Simple_repeat 2 58 0 2012 130 7 3 chr3 119792764 119793056 -98244102 + AluSx SINE Alu 1 293 -19 372 43 0 0 chr3 119793056 119793102 -98244056 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 1333 161 173 8 chr3 119793196 119793450 -98243708 - AluSg SINE Alu -3 297 2 2105 94 0 21 chr3 119793562 119793848 -98243310 - AluSx SINE Alu -30 282 3 1839 163 81 0 chr3 119794075 119794444 -98242714 - L1MD1 LINE L1 -5 6237 5839 908 181 98 5 chr3 119794445 119794660 -98242498 - L1MDa LINE L1 -6288 252 18 13124 128 22 68 chr3 119795024 119795363 -98241795 - Tigger1 DNA MER2_type 0 2418 2065 444 19 0 0 chr3 119795363 119795416 -98241742 + (TG)n Simple_repeat Simple_repeat 2 54 0 1822 134 0 11 chr3 119795416 119795691 -98241467 - AluSx SINE Alu -40 272 1 13124 128 22 68 chr3 119795691 119796478 -98240680 - Tigger1 DNA MER2_type -352 2066 1245 1100 108 18 6 chr3 119796478 119796645 -98240513 - L1PA10 LINE L1 -3 6165 5997 13124 128 22 68 chr3 119796645 119797015 -98240143 - Tigger1 DNA MER2_type -1173 1245 860 628 112 10 0 chr3 119797015 119797113 -98240045 - AluJ/FLAM SINE Alu -213 99 1 13124 128 22 68 chr3 119797113 119798048 -98239110 - Tigger1 DNA MER2_type -1558 860 1 659 143 118 0 chr3 119798111 119798230 -98238928 - FLAM_C SINE Alu 0 133 1 2127 118 3 3 chr3 119798286 119798583 -98238575 + AluY SINE Alu 1 297 -14 888 231 0 6 chr3 119799511 119799693 -98237465 + AluJb SINE Alu 130 310 -2 1860 153 3 3 chr3 119799849 119800144 -98237014 - AluJb SINE Alu -16 296 2 25 0 0 0 chr3 119800155 119800180 -98236978 + AT_rich Low_complexity Low_complexity 1 25 0 202 314 57 29 chr3 119800987 119801092 -98236066 - MIR SINE MIR -59 203 96 2247 126 0 3 chr3 119801201 119801510 -98235648 + AluSx SINE Alu 1 308 -4 185 334 74 67 chr3 119801745 119802044 -98235114 - L2 LINE L2 -1484 1830 1530 384 216 0 14 chr3 119802128 119802202 -98234956 - Tigger3(Golem) DNA MER2_type -1 3028 2956 495 245 86 20 chr3 119802281 119802432 -98234726 + MIR SINE MIR 97 257 -5 1993 130 10 20 chr3 119802552 119802872 -98234286 - AluSx SINE Alu 0 312 5 634 182 0 16 chr3 119802943 119803064 -98234094 - Tigger3(Golem) DNA MER2_type -2846 183 65 360 197 0 0 chr3 119803109 119803175 -98233983 - Tigger3(Golem) DNA MER2_type -2952 77 12 1887 146 12 6 chr3 119803188 119803511 -98233647 + MER7A DNA MER2_type 24 346 0 821 257 28 0 chr3 119803529 119803708 -98233450 - MIR SINE MIR -77 185 2 765 246 76 45 chr3 119804416 119804705 -98232453 - MER77 LTR ERV1 -4 601 304 1758 157 21 0 chr3 119804705 119805012 -98232146 - AluSq SINE Alu 0 313 1 1336 155 0 0 chr3 119805013 119805219 -98231939 - AluJb SINE Alu -8 304 99 233 223 155 29 chr3 119805375 119805478 -98231680 - MER77 LTR ERV1 -436 169 54 375 290 113 39 chr3 119805647 119805930 -98231228 - MLT1I LTR MaLR -69 340 37 188 301 77 77 chr3 119806222 119806405 -98230753 + L2 LINE L2 2835 3017 -255 1381 177 8 26 chr3 119806570 119806836 -98230322 + AluJo SINE Alu 40 300 -12 28 29 0 0 chr3 119807496 119807531 -98229627 + AT_rich Low_complexity Low_complexity 1 35 0 327 312 18 0 chr3 119807740 119807849 -98229309 - MER94 DNA DNA 0 134 24 22 0 0 0 chr3 119809721 119809743 -98227415 + AT_rich Low_complexity Low_complexity 1 22 0 785 204 20 13 chr3 119810042 119810194 -98226964 + FRAM SINE Alu 1 145 -31 414 269 141 73 chr3 119811302 119811849 -98225309 - L1MC4a LINE L1 -1911 5897 5314 2253 115 0 0 chr3 119812643 119812948 -98224210 - AluSx SINE Alu -3 309 5 234 300 22 22 chr3 119815939 119816029 -98221129 + MIR SINE MIR 53 142 -66 2521 50 3 0 chr3 119818831 119819128 -98218030 - AluY SINE Alu -13 298 1 24 53 0 0 chr3 119819294 119819332 -98217826 + AT_rich Low_complexity Low_complexity 1 38 0 198 329 7 49 chr3 119819890 119820033 -98217125 + L2 LINE L2 1220 1356 -1958 1133 308 169 40 chr3 119820100 119821613 -98215545 + L2 LINE L2 1521 3232 -40 2060 141 0 0 chr3 119822054 119822353 -98214805 - AluSx SINE Alu -11 301 3 642 274 0 26 chr3 119824040 119824199 -98212959 + MER46C DNA MER2_type 153 308 -30 450 196 9 9 chr3 119824199 119824306 -98212852 + L1MA10 LINE L1 6228 6334 0 642 274 0 26 chr3 119824306 119824336 -98212822 + MER46C DNA MER2_type 308 337 -1 777 171 0 0 chr3 119824471 119824588 -98212570 + FLAM_C SINE Alu 1 117 -16 273 57 0 0 chr3 119824591 119824626 -98212532 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 661 211 43 22 chr3 119824792 119824977 -98212181 + MER53 DNA DNA 1 189 0 386 266 98 21 chr3 119825608 119825751 -98211407 - MER5B DNA MER1_type 0 178 25 1698 186 3 17 chr3 119826206 119826497 -98210661 + AluJo SINE Alu 1 287 -25 2328 63 3 3 chr3 119827137 119827421 -98209737 - AluY SINE Alu -11 300 17 211 139 23 23 chr3 119828704 119828747 -98208411 + CT-rich Low_complexity Low_complexity 3 45 0 351 336 21 28 chr3 119832026 119832169 -98204989 - MIR3 SINE MIR -29 179 38 1378 111 0 10 chr3 119832426 119832624 -98204534 - AluY SINE Alu -10 301 106 345 240 0 73 chr3 119832718 119832777 -98204381 + MIR3 SINE MIR 91 142 -66 3038 83 15 44 chr3 119832777 119832832 -98204326 - MLT2A1 LTR ERVL 0 444 389 387 0 0 0 chr3 119832832 119832875 -98204283 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 3038 83 15 44 chr3 119832875 119833276 -98203882 - MLT2A1 LTR ERVL -55 389 1 345 240 0 73 chr3 119833276 119833312 -98203846 + MIR3 SINE MIR 142 179 -29 1680 144 31 53 chr3 119834820 119835139 -98202019 + AluJb SINE Alu 1 312 0 950 199 0 5 chr3 119835524 119835715 -98201443 - L1MC1 LINE L1 -5 6328 6139 21 0 0 0 chr3 119835798 119835819 -98201339 + AT_rich Low_complexity Low_complexity 1 21 0 213 39 0 0 chr3 119836107 119836133 -98201025 + (TTTCC)n Simple_repeat Simple_repeat 4 29 0 2131 107 26 13 chr3 119836134 119836443 -98200715 - AluSq SINE Alu 0 313 1 1842 168 3 3 chr3 119838856 119839170 -98197988 + AluSx SINE Alu 1 314 0 21 0 0 0 chr3 119839425 119839446 -98197712 + AT_rich Low_complexity Low_complexity 1 21 0 470 198 9 0 chr3 119839570 119839676 -98197482 + L1ME2 LINE L1 4545 4651 -1495 2190 224 16 2 chr3 119839676 119840128 -98197030 - MER82 DNA MER2_type 0 653 196 31 58 0 0 chr3 119840129 119840181 -98196977 + AT_rich Low_complexity Low_complexity 1 52 0 1005 173 40 20 chr3 119840186 119840388 -98196770 - MER82 DNA MER2_type -447 206 1 1120 251 80 46 chr3 119840389 119840827 -98196331 + L1ME2 LINE L1 4651 5103 -1043 2565 221 81 59 chr3 119840832 119841701 -98195457 + L1ME2 LINE L1 5254 6141 -23 26 0 0 0 chr3 119841702 119841728 -98195430 + AT_rich Low_complexity Low_complexity 1 26 0 299 174 29 0 chr3 119841803 119841872 -98195286 + L1M4 LINE L1 4982 5052 -1094 2161 90 33 7 chr3 119842001 119842302 -98194856 - AluY SINE Alu -2 309 1 23 33 0 0 chr3 119842303 119842333 -98194825 + AT_rich Low_complexity Low_complexity 1 30 0 294 73 0 0 chr3 119842890 119842931 -98194227 + (TG)n Simple_repeat Simple_repeat 2 42 0 226 138 15 77 chr3 119843010 119843075 -98194083 + CT-rich Low_complexity Low_complexity 6 66 0 22 25 0 25 chr3 119843347 119843374 -98193784 + AT_rich Low_complexity Low_complexity 1 28 -11 2035 119 36 0 chr3 119843374 119843652 -98193506 - AluSx SINE Alu -24 288 1 22 25 0 25 chr3 119843652 119843664 -98193494 + AT_rich Low_complexity Low_complexity 28 39 0 998 303 38 40 chr3 119844014 119844513 -98192645 - L2 LINE L2 -510 2804 2307 233 226 0 19 chr3 119844762 119844815 -98192343 + CT-rich Low_complexity Low_complexity 3 54 0 261 98 0 0 chr3 119845576 119845617 -98191541 + (TG)n Simple_repeat Simple_repeat 1 41 0 467 224 49 71 chr3 119847638 119847821 -98189337 - MIR SINE MIR -13 249 71 25 0 0 0 chr3 119847855 119847880 -98189278 + AT_rich Low_complexity Low_complexity 1 25 0 835 250 52 14 chr3 119848533 119848745 -98188413 + MIR SINE MIR 42 261 -1 23 54 0 0 chr3 119848921 119848958 -98188200 + AT_rich Low_complexity Low_complexity 1 37 0 676 114 0 0 chr3 119849091 119849196 -98187962 - L1PB2 LINE L1 0 6151 6047 497 341 44 6 chr3 119850366 119850620 -98186538 - MIR SINE MIR 0 262 3 240 385 77 0 chr3 119852051 119852168 -98184990 - L2 LINE L2 -43 3229 3104 235 319 14 0 chr3 119852249 119852321 -98184837 - tRNA-Leu-CTA tRNA tRNA -5 80 8 331 217 23 16 chr3 119852361 119852490 -98184668 + (TA)n Simple_repeat Simple_repeat 2 131 0 1648 159 4 15 chr3 119852793 119853064 -98184094 - AluJb SINE Alu -27 285 18 1766 169 25 0 chr3 119853249 119853533 -98183625 + AluJo SINE Alu 2 292 -20 22 0 0 0 chr3 119855848 119855870 -98181288 + AT_rich Low_complexity Low_complexity 1 22 0 2373 96 0 0 chr3 119858380 119858682 -98178476 + AluSc SINE Alu 1 302 -7 2218 110 7 7 chr3 119859978 119860287 -98176871 + AluSq SINE Alu 3 311 -2 180 0 0 0 chr3 119861616 119861636 -98175522 + (CA)n Simple_repeat Simple_repeat 1 20 0 648 122 0 152 chr3 119861639 119861683 -98175475 + L1MA9 LINE L1 6167 6216 -96 1931 140 0 7 chr3 119861683 119861961 -98175197 - AluSx SINE Alu -25 287 12 648 122 0 152 chr3 119861961 119862080 -98175078 + L1MA9 LINE L1 6216 6305 -7 23 54 0 0 chr3 119862856 119862893 -98174265 + AT_rich Low_complexity Low_complexity 1 37 0 193 297 218 0 chr3 119862903 119863004 -98174154 - L2 LINE L2 -12 3260 3138 341 58 19 0 chr3 119863832 119863884 -98173274 + (TG)n Simple_repeat Simple_repeat 2 54 0 368 250 59 59 chr3 119864078 119864214 -98172944 + MIR3 SINE MIR 41 176 -32 214 49 24 24 chr3 119864286 119864327 -98172831 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 216 0 0 0 chr3 119865306 119865330 -98171828 + (A)n Simple_repeat Simple_repeat 1 24 0 198 244 70 113 chr3 119869177 119869292 -98167866 + L3 LINE CR1 614 723 -854 486 322 122 5 chr3 119869918 119870328 -98166830 - L1MC4a LINE L1 -1850 5958 5501 33 66 0 0 chr3 119870953 119871014 -98166144 + AT_rich Low_complexity Low_complexity 1 61 0 188 295 16 0 chr3 119871462 119871523 -98165635 - MIR SINE MIR 0 262 201 22 0 0 0 chr3 119872962 119872984 -98164174 + AT_rich Low_complexity Low_complexity 1 22 0 2191 108 0 0 chr3 119874350 119874636 -98162522 + AluSq SINE Alu 1 286 -27 315 282 182 48 chr3 119875165 119875577 -98161581 - L1MC/D LINE L1 -2025 5783 5317 245 248 76 19 chr3 119877657 119877762 -98159396 + L3 LINE CR1 792 902 -675 1901 148 9 28 chr3 119878355 119878673 -98158485 + AluJo SINE Alu 1 312 0 319 324 67 22 chr3 119879913 119880092 -98157066 + MIR3 SINE MIR 17 203 -5 188 322 17 103 chr3 119881695 119881869 -98155289 - L2 LINE L2 -246 3026 2868 331 346 123 41 chr3 119882233 119882600 -98154558 - L2 LINE L2 -33 3239 2843 1124 281 159 13 chr3 119882754 119883470 -98153688 - L2 LINE L2 -1 3312 2503 2285 71 0 0 chr3 119883760 119884066 -98153092 - AluY SINE Alu 0 306 1 245 189 7 101 chr3 119884094 119884242 -98152916 + T-rich Low_complexity Low_complexity 2 135 0 1940 171 55 6 chr3 119884804 119885132 -98152026 + MER2 DNA MER2_type 1 344 0 739 178 89 0 chr3 119885236 119885371 -98151787 + MER5A DNA MER1_type 1 147 -42 1729 174 7 0 chr3 119885947 119886222 -98150936 - AluJb SINE Alu -35 277 1 280 281 165 15 chr3 119887553 119887820 -98149338 + L1ME4a LINE L1 5762 6068 -53 28 48 0 0 chr3 119887851 119887893 -98149265 + AT_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr3 119888363 119888389 -98148769 + AT_rich Low_complexity Low_complexity 1 26 0 28 61 0 0 chr3 119889541 119889590 -98147568 + AT_rich Low_complexity Low_complexity 1 49 0 22 56 0 0 chr3 119889959 119889995 -98147163 + AT_rich Low_complexity Low_complexity 1 36 0 668 200 29 41 chr3 119890043 119890212 -98146946 - LTR37B LTR ERV1 -21 447 281 3081 182 20 11 chr3 119890212 119890762 -98146396 + MER68 LTR ERV1 1 555 -7 485 123 25 0 chr3 119890767 119890848 -98146310 - LTR37B LTR ERV1 -194 274 192 507 202 247 6 chr3 119891057 119891235 -98145923 + MIR SINE MIR 1 221 -41 637 288 121 33 chr3 119892571 119892991 -98144167 + L2 LINE L2 2039 2495 -819 1688 233 29 0 chr3 119893094 119893471 -98143687 + MER63B DNA MER1_type 20 407 -29 2138 120 0 3 chr3 119893875 119894174 -98142984 + AluSc SINE Alu 1 298 -11 216 278 93 0 chr3 119895103 119895157 -98142001 + L2 LINE L2 3214 3272 0 2187 105 0 0 chr3 119895488 119895773 -98141385 + AluSx SINE Alu 2 286 -26 23 0 0 0 chr3 119895784 119895807 -98141351 + AT_rich Low_complexity Low_complexity 1 23 0 508 323 89 17 chr3 119899552 119899787 -98137371 - MIR SINE MIR -4 258 7 185 116 0 47 chr3 119899868 119899911 -98137247 + (GGA)n Simple_repeat Simple_repeat 2 42 0 544 261 144 37 chr3 119901836 119902051 -98135107 + MIR SINE MIR 21 258 -4 695 273 107 9 chr3 119902399 119902615 -98134543 + MIR SINE MIR 20 256 -6 1729 82 0 13 chr3 119903022 119903255 -98133903 - AluY SINE Alu -1 310 81 1108 68 0 0 chr3 119903260 119903392 -98133766 - AluY SINE Alu -179 132 1 898 253 5 0 chr3 119903480 119903666 -98133492 - MER5A DNA MER1_type 0 189 3 2559 153 31 2 chr3 119904422 119904847 -98132311 - L1MC1 LINE L1 -9 6324 5888 238 275 0 14 chr3 119905365 119905434 -98131724 + MER5B DNA MER1_type 8 75 -103 858 199 24 0 chr3 119905662 119905828 -98131330 - AluJo SINE Alu -26 286 117 2432 172 41 10 chr3 119906160 119906573 -98130585 - MSTB LTR MaLR 0 426 1 300 351 61 12 chr3 119906865 119907030 -98130128 + MIR SINE MIR 2 174 -88 1510 106 0 0 chr3 119907207 119907406 -98129752 - AluY SINE Alu -7 304 106 363 242 0 63 chr3 119907500 119907558 -98129600 + MIR3 SINE MIR 91 142 -66 3250 88 15 44 chr3 119907558 119907613 -98129545 - MLT2A1 LTR ERVL 0 444 389 423 0 0 0 chr3 119907613 119907660 -98129498 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 3250 88 15 44 chr3 119907660 119908061 -98129097 - MLT2A1 LTR ERVL -55 389 1 363 242 0 63 chr3 119908061 119908097 -98129061 + MIR3 SINE MIR 142 179 -29 22 70 0 0 chr3 119908690 119908733 -98128425 + AT_rich Low_complexity Low_complexity 1 43 0 210 217 0 0 chr3 119910208 119910254 -98126904 + CT-rich Low_complexity Low_complexity 4 49 0 621 100 0 0 chr3 119912403 119912493 -98124665 + (TCCC)n Simple_repeat Simple_repeat 3 92 0 604 225 23 16 chr3 119912516 119912645 -98124513 - MER94 DNA DNA -1 133 4 263 194 65 0 chr3 119912923 119912985 -98124173 + MER58 DNA MER1_type 2354 2419 -1 234 0 0 0 chr3 119913982 119914008 -98123150 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 258 184 79 40 chr3 119914120 119914196 -98122962 + L3b LINE CR1 1296 1374 -209 180 237 102 34 chr3 119914309 119914368 -98122790 - L2 LINE L2 -11 3302 3240 239 200 0 13 chr3 119914428 119914503 -98122655 + (TGGA)n Simple_repeat Simple_repeat 1 74 0 273 315 81 0 chr3 119917560 119917709 -98119449 - L1ME LINE L1 -323 5798 5638 2100 126 7 3 chr3 119918005 119918315 -98118843 - AluSp SINE Alu -2 311 1 1925 120 3 23 chr3 119918751 119919050 -98118108 - AluSg SINE Alu -17 293 1 1408 205 8 91 chr3 119919249 119919644 -98117514 - MLT1A1 LTR MaLR -3 362 1 641 251 123 23 chr3 119919647 119919866 -98117292 - MIR SINE MIR -13 249 9 213 269 104 15 chr3 119919873 119919940 -98117218 - L2 LINE L2 -31 3241 3169 274 254 0 0 chr3 119920211 119920266 -98116892 - MER96B DNA MER1_type? -1 416 362 233 268 0 42 chr3 119920407 119920478 -98116680 - L2 LINE L2 -1 3271 3204 2207 109 3 19 chr3 119920531 119920842 -98116316 + AluSq SINE Alu 1 306 -7 208 143 0 61 chr3 119921509 119921558 -98115600 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 2333 151 43 24 chr3 119921640 119922058 -98115100 + MSTB LTR MaLR 1 426 0 7553 173 95 4 chr3 119922059 119923571 -98113587 + MSTB-int LTR MaLR 3 1651 0 1935 141 56 48 chr3 119923571 119923838 -98113320 + MSTB LTR MaLR 1 273 -153 1961 144 35 37 chr3 119923838 119924214 -98112944 + THE1C LTR MaLR 1 375 0 1935 141 56 48 chr3 119924214 119924342 -98112816 + MSTB LTR MaLR 273 399 -27 1877 134 4 0 chr3 119924358 119924633 -98112525 - AluSq SINE Alu -1 312 37 1393 207 165 32 chr3 119925989 119926036 -98111122 + LTR40c LTR ERVL 5 44 -421 1611 187 170 5 chr3 119926036 119926437 -98110721 + MLT1C LTR MaLR 1 467 0 1393 207 165 32 chr3 119926437 119926795 -98110363 + LTR40c LTR ERVL 44 464 -1 182 363 32 8 chr3 119926834 119926958 -98110200 - L2 LINE L2 -65 3248 3122 22 35 0 0 chr3 119927202 119927231 -98109927 + AT_rich Low_complexity Low_complexity 1 29 0 2353 61 0 42 chr3 119927690 119928000 -98109158 + AluY SINE Alu 1 297 -14 302 239 101 9 chr3 119928929 119929038 -98108120 - L1MC4 LINE L1 -1 8041 7923 28 29 0 0 chr3 119929150 119929185 -98107973 + AT_rich Low_complexity Low_complexity 1 35 0 29 0 0 0 chr3 119929574 119929603 -98107555 + AT_rich Low_complexity Low_complexity 1 29 0 1253 176 21 13 chr3 119931332 119931565 -98105593 - AluJo SINE Alu -77 235 1 1787 239 57 45 chr3 119932063 119932540 -98104618 - MER97b DNA MER1_type? -30 864 352 2936 101 27 25 chr3 119932540 119932987 -98104171 + MER83 LTR ERV1 1 448 0 1787 239 57 45 chr3 119932987 119933290 -98103868 - MER97b DNA MER1_type? -542 352 54 950 211 82 11 chr3 119933344 119933623 -98103535 - MER31B LTR ERV1 -21 445 147 308 167 0 0 chr3 119933645 119933699 -98103459 + A-rich Low_complexity Low_complexity 1 54 0 681 131 197 0 chr3 119933712 119933849 -98103309 - MER31B LTR ERV1 -302 164 1 260 57 0 0 chr3 119936211 119936246 -98100912 - MER11B LTR ERVK -894 342 308 2064 130 10 0 chr3 119936470 119936763 -98100395 + AluSq SINE Alu 1 296 -17 5369 148 29 46 chr3 119936929 119938018 -98099140 + MER11C LTR ERVK 1 1071 0 1913 147 0 35 chr3 119938654 119938966 -98098192 - AluJo SINE Alu -11 301 1 322 247 11 22 chr3 119939438 119939527 -98097631 + MER21B LTR ERV1 3 90 -773 283 289 247 0 chr3 119939569 119939666 -98097492 + MER21B LTR ERV1 19 139 -724 1521 223 99 48 chr3 119939710 119940267 -98096891 + MER21B LTR ERV1 231 815 -48 246 299 137 17 chr3 119940621 119940738 -98096420 - L2 LINE L2 -3 3269 3139 199 283 19 0 chr3 119941549 119941602 -98095556 - L2 LINE L2 -5 3267 3214 246 156 0 0 chr3 119941611 119941656 -98095502 + CT-rich Low_complexity Low_complexity 2 46 0 184 284 184 64 chr3 119941684 119941793 -98095365 - L2 LINE L2 -14 3258 3137 345 250 0 25 chr3 119942460 119942540 -98094618 + MIR3 SINE MIR 110 187 -21 389 288 98 14 chr3 119942891 119943106 -98094052 - L1ME LINE L1 -351 5770 5538 1156 177 238 3 chr3 119943284 119943566 -98093592 - MER7A DNA MER2_type 0 346 1 314 175 21 72 chr3 119944959 119945056 -98092102 - MER103 DNA DNA -54 112 21 466 206 206 53 chr3 119945117 119945306 -98091852 + MIR SINE MIR 18 235 -27 2325 104 0 0 chr3 119945333 119945630 -98091528 - AluSx SINE Alu -15 297 1 216 266 43 0 chr3 119946639 119946733 -98090425 + (TA)n Simple_repeat Simple_repeat 1 98 0 565 198 6 62 chr3 119946888 119947050 -98090108 - L1MC5 LINE L1 -52 7909 7757 1326 283 86 24 chr3 119947275 119947809 -98089349 - MLT1K LTR MaLR -1 587 21 250 163 0 0 chr3 119948529 119948578 -98088580 - L1ME4a LINE L1 0 6121 6073 229 179 18 18 chr3 119949012 119949068 -98088090 - MIR SINE MIR -66 196 141 2474 147 30 59 chr3 119949069 119949618 -98087540 + MER51C LTR ERV1 1 640 0 836 253 80 13 chr3 119950280 119950581 -98086577 - LTR50 LTR ERVL -10 785 465 252 0 0 0 chr3 119950711 119950739 -98086419 + (A)n Simple_repeat Simple_repeat 1 28 0 21 71 0 0 chr3 119951078 119951120 -98086038 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr3 119951311 119951333 -98085825 + AT_rich Low_complexity Low_complexity 1 22 0 1273 172 103 31 chr3 119951346 119951666 -98085492 - MER2 DNA MER2_type 0 344 2 1100 18 53 6 chr3 119951716 119951885 -98085273 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 1192 210 20 114 chr3 119952107 119952555 -98084603 - L2 LINE L2 -3 3310 2905 21 57 0 0 chr3 119952654 119952689 -98084469 + AT_rich Low_complexity Low_complexity 1 35 0 213 179 36 36 chr3 119952795 119952851 -98084307 + GA-rich Low_complexity Low_complexity 5 60 0 387 254 109 29 chr3 119953616 119953754 -98083404 - L2 LINE L2 -5 3308 3160 205 342 58 25 chr3 119953820 119953969 -98083189 - MIR SINE MIR -65 143 42 2501 51 3 3 chr3 119954920 119955252 -98081906 - AluY SINE Alu 0 332 1 335 243 139 14 chr3 119955439 119955583 -98081575 + MIR SINE MIR 51 212 -50 261 0 0 0 chr3 119955667 119955696 -98081462 + (CA)n Simple_repeat Simple_repeat 2 30 0 918 114 8 0 chr3 119956125 119956248 -98080910 + AluJb SINE Alu 1 124 -188 195 42 0 0 chr3 119956710 119956734 -98080424 + (CA)n Simple_repeat Simple_repeat 1 24 0 235 294 24 24 chr3 119956777 119956862 -98080296 + L3b LINE CR1 1221 1305 -278 475 270 7 8 chr3 119957436 119957576 -98079582 - MIR SINE MIR -68 140 9 2145 140 0 6 chr3 119957926 119958240 -98078918 - AluSx SINE Alu 0 312 1 436 276 76 0 chr3 119958561 119958666 -98078492 + MIR SINE MIR 34 146 -62 368 302 28 9 chr3 119959426 119959532 -98077626 + MIR SINE MIR 29 136 -126 7957 73 4 19 chr3 119960148 119961236 -98075922 - MER11C LTR ERVK 0 1071 1 204 260 96 0 chr3 119961781 119961854 -98075304 - MIR SINE MIR -103 159 80 43 88 0 0 chr3 119962270 119962383 -98074775 + AT_rich Low_complexity Low_complexity 1 113 0 433 194 31 93 chr3 119963942 119964071 -98073087 - MLT1H LTR MaLR -8 541 421 538 263 49 19 chr3 119964115 119964320 -98072838 - MLT1H LTR MaLR -240 309 99 1621 199 0 43 chr3 119964561 119964887 -98072271 - AluJb SINE Alu 0 312 1 23 0 0 0 chr3 119965226 119965249 -98071909 + AT_rich Low_complexity Low_complexity 1 23 0 1685 175 7 10 chr3 119965264 119965561 -98071597 - AluJo SINE Alu -11 301 6 234 270 149 0 chr3 119966171 119966245 -98070913 - L2 LINE L2 -4 3268 3184 644 212 0 34 chr3 119966812 119966930 -98070228 - MER81 DNA DNA 0 114 1 231 125 0 0 chr3 119966942 119966982 -98070176 + (TG)n Simple_repeat Simple_repeat 1 40 0 25 31 0 0 chr3 119967000 119967032 -98070126 + AT_rich Low_complexity Low_complexity 1 32 0 37114 81 3 10 chr3 119967051 119971008 -98066150 - L1PA6 LINE L1 0 6154 2248 894 57 0 0 chr3 119971008 119971113 -98066045 - L1PA5 LINE L1 -8 6146 6042 37114 81 3 10 chr3 119971113 119973003 -98064155 - L1PA6 LINE L1 -3906 2248 347 4328 46 0 13 chr3 119973002 119973312 -98063846 - L1PA5 LINE L1 -364 5790 5494 * 2244 96 0 35 chr3 119973312 119973625 -98063533 - AluSx SINE Alu -10 302 1 4328 46 0 13 chr3 119973625 119973942 -98063216 - L1PA5 LINE L1 -660 5494 5174 579 242 82 31 chr3 119978697 119978891 -98058267 + MIR SINE MIR 3 206 -56 1573 118 50 9 chr3 119979647 119979868 -98057290 - MER30 DNA MER1_type 0 230 1 677 196 140 35 chr3 119979951 119980171 -98056987 - MIR SINE MIR 0 262 19 289 210 222 12 chr3 119980664 119980745 -98056413 + MIR SINE MIR 157 254 -8 423 173 0 0 chr3 119980750 119980831 -98056327 + (CTA)n Simple_repeat Simple_repeat 2 82 0 2187 70 3 24 chr3 119981373 119981702 -98055456 + AluY SINE Alu 1 323 0 21 0 0 0 chr3 119981969 119981990 -98055168 + AT_rich Low_complexity Low_complexity 1 21 0 32 67 0 0 chr3 119984001 119984061 -98053097 + AT_rich Low_complexity Low_complexity 1 60 0 299 313 227 5 chr3 119984532 119984730 -98052428 - MIR SINE MIR -10 252 11 538 139 12 0 chr3 119985184 119985270 -98051888 + LTR33 LTR ERVL 340 426 -95 297 0 0 0 chr3 119985571 119985604 -98051554 + (TG)n Simple_repeat Simple_repeat 2 34 0 290 87 22 0 chr3 119985755 119985801 -98051357 + (TG)n Simple_repeat Simple_repeat 2 48 0 637 297 56 4 chr3 119985823 119986072 -98051086 - MIR SINE MIR 0 262 1 251 259 130 19 chr3 119986082 119986190 -98050968 + L2 LINE L2 3153 3272 0 200 333 57 9 chr3 119988671 119988776 -98048382 - MIR SINE MIR -50 212 103 257 0 30 0 chr3 119988883 119988916 -98048242 + (TCTA)n Simple_repeat Simple_repeat 3 36 0 25 31 0 0 chr3 119988919 119988951 -98048207 + AT_rich Low_complexity Low_complexity 1 32 0 284 303 82 16 chr3 119989295 119989417 -98047741 - MARNA DNA Mariner -335 251 122 2405 75 3 13 chr3 119989465 119989772 -98047386 + AluSp SINE Alu 1 304 -9 221 182 45 0 chr3 119990421 119990465 -98046693 - MER5B DNA MER1_type -132 46 1 1017 172 16 5 chr3 119990509 119990695 -98046463 - AluJo SINE Alu -4 308 121 188 286 98 36 chr3 119990721 119990833 -98046325 + L3b LINE CR1 1240 1358 -225 249 273 25 58 chr3 119991733 119991854 -98045304 + MER5B DNA MER1_type 61 177 -1 2630 52 0 0 chr3 119991940 119992249 -98044909 + AluY SINE Alu 1 309 -2 338 323 52 7 chr3 119992399 119992554 -98044604 - MIR SINE MIR -54 208 47 2076 153 0 0 chr3 119994211 119994512 -98042646 - AluSx SINE Alu -11 301 1 391 262 131 22 chr3 119994694 119994877 -98042281 - L1ME4a LINE L1 -119 6002 5800 2467 191 23 2 chr3 119996391 119996832 -98040326 - LTR47A LTR ERVL 0 452 3 658 216 58 12 chr3 119996934 119997105 -98040053 - MER97b DNA MER1_type? -874 179 1 943 79 87 0 chr3 119998103 119998229 -98038929 - MER85 DNA T2_type -2 137 1 2154 166 5 27 chr3 119998820 119999123 -98038035 - MLT1A1 LTR MaLR 0 365 70 2003 136 163 19 chr3 119999123 119999497 -98037661 + MSTA LTR MaLR 1 428 0 2154 166 5 27 chr3 119999497 119999566 -98037592 - MLT1A1 LTR MaLR -295 70 1 339 265 78 29 chr3 119999619 119999721 -98037437 + MIR SINE MIR 45 151 -57 424 316 61 15 chr3 119999744 119999940 -98037218 + MIR SINE MIR 58 262 0 308 351 120 5 chr3 120000056 120000264 -98036894 - MIR SINE MIR -23 239 8 312 244 141 0 chr3 120000911 120001067 -98036091 + L1ME4a LINE L1 5690 5867 -254 2766 189 94 4 chr3 120001348 120001860 -98035298 - MER68 LTR ERV1 -4 558 1 208 232 60 0 chr3 120002530 120002587 -98034571 + MIR SINE MIR 91 143 -65 1778 94 11 34 chr3 120003337 120003604 -98033554 + L1PA13 LINE L1 5899 6159 -4 244 295 122 100 chr3 120003707 120003978 -98033180 - L2 LINE L2 -3 3269 2993 384 300 177 26 chr3 120004122 120004432 -98032726 - L2 LINE L2 -561 2753 2397 32 57 0 0 chr3 120004809 120004862 -98032296 + AT_rich Low_complexity Low_complexity 1 53 0 1328 106 56 0 chr3 120004862 120005060 -98032098 - L1PB1 LINE L1 -1 6150 5942 651 202 202 5 chr3 120005706 120005757 -98031401 - MER21B LTR ERV1 -15 848 808 288 0 0 0 chr3 120005757 120005789 -98031369 + (TG)n Simple_repeat Simple_repeat 2 33 0 651 202 202 5 chr3 120005789 120005925 -98031233 - MER21B LTR ERV1 -55 808 624 998 82 15 0 chr3 120005925 120006060 -98031098 + AluY SINE Alu 165 301 -10 1261 253 75 12 chr3 120006070 120006402 -98030756 - MER21B LTR ERV1 -241 622 270 696 219 7 0 chr3 120006469 120006606 -98030552 - FLAM_A SINE Alu -1 141 4 710 234 94 18 chr3 120006615 120006786 -98030372 - MER21B LTR ERV1 -661 202 19 400 202 11 64 chr3 120006809 120006903 -98030255 - MER21B LTR ERV1 -774 89 1 294 226 0 32 chr3 120007360 120007422 -98029736 - L2 LINE L2 -9 3263 3204 226 222 0 0 chr3 120007427 120007472 -98029686 + GA-rich Low_complexity Low_complexity 3 47 0 242 303 28 76 chr3 120007845 120007990 -98029168 + MIR SINE MIR 49 186 -76 816 289 97 25 chr3 120008304 120008970 -98028188 + L1ME2 LINE L1 5214 5929 -235 489 252 54 29 chr3 120009950 120010088 -98027070 - MIR3 SINE MIR -5 203 61 2309 106 3 0 chr3 120010265 120010576 -98026582 + AluSx SINE Alu 1 312 0 21 0 0 0 chr3 120010771 120010792 -98026366 + AT_rich Low_complexity Low_complexity 1 21 0 1950 134 24 0 chr3 120011146 120011436 -98025722 + AluSc SINE Alu 1 297 -12 230 119 0 24 chr3 120014226 120014268 -98022890 + L2 LINE L2 3272 3312 -1 21 0 0 0 chr3 120014619 120014640 -98022518 + AT_rich Low_complexity Low_complexity 1 21 0 2427 88 0 0 chr3 120014640 120014937 -98022221 + AluSq SINE Alu 1 297 -16 250 262 66 0 chr3 120015240 120015301 -98021857 - L2 LINE L2 -56 3257 3193 21 36 0 0 chr3 120016048 120016076 -98021082 + AT_rich Low_complexity Low_complexity 1 28 0 199 118 0 0 chr3 120017154 120017188 -98019970 + (TTTTG)n Simple_repeat Simple_repeat 2 125 0 409 117 39 52 chr3 120017188 120017265 -98019893 - FRAM SINE Alu -1 181 73 2131 85 30 0 chr3 120019321 120019591 -98017567 + AluSq SINE Alu 3 280 -33 252 0 0 0 chr3 120019591 120019619 -98017539 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 261 345 11 0 chr3 120020044 120020131 -98017027 - MIR SINE MIR -56 152 65 224 361 75 8 chr3 120021668 120021801 -98015357 - MIR SINE MIR -115 147 6 225 114 0 45 chr3 120022115 120022159 -98014999 + tRNA-Thr-ACT tRNA tRNA 1 42 -35 930 196 46 23 chr3 120022429 120022648 -98014510 - MER58A DNA MER1_type 0 224 1 320 305 162 36 chr3 120022859 120023026 -98014132 + MIR3 SINE MIR 20 207 -1 223 250 42 0 chr3 120023656 120023704 -98013454 - MIR3 SINE MIR -50 158 109 794 186 0 0 chr3 120024239 120024384 -98012774 + MSTB LTR MaLR 1 145 -281 647 102 10 0 chr3 120024382 120024480 -98012678 + MSTB LTR MaLR 334 432 0 * 2281 106 3 0 chr3 120024545 120024846 -98012312 + AluSq SINE Alu 1 302 -11 716 265 51 43 chr3 120024986 120025239 -98011919 + MIR SINE MIR 2 256 -6 290 298 48 0 chr3 120025817 120025901 -98011257 - L2 LINE L2 -49 3223 3136 188 265 69 39 chr3 120026553 120026655 -98010503 + L2 LINE L2 1917 2021 -1293 359 303 41 78 chr3 120026663 120026881 -98010277 + L2 LINE L2 2599 2808 -506 413 193 52 82 chr3 120027756 120027891 -98009267 - MER94 DNA DNA -1 133 3 498 345 0 48 chr3 120028698 120028863 -98008295 + L2 LINE L2 3116 3272 0 566 304 76 18 chr3 120031291 120031515 -98005643 - MIR SINE MIR -6 256 20 21 0 0 0 chr3 120031692 120031713 -98005445 + AT_rich Low_complexity Low_complexity 1 21 0 797 154 8 0 chr3 120031716 120031839 -98005319 - FLAM_A SINE Alu -8 125 2 24 53 0 0 chr3 120032159 120032197 -98004961 + AT_rich Low_complexity Low_complexity 1 38 0 239 393 45 0 chr3 120032198 120032310 -98004848 - L2 LINE L2 -18 3254 3138 281 266 221 18 chr3 120032692 120032805 -98004353 - MIR SINE MIR -18 244 109 1087 187 76 5 chr3 120033750 120034038 -98003120 + L1ME1 LINE L1 5263 5571 -595 1264 234 140 63 chr3 120034042 120034780 -98002378 + LTR1B LTR ERV1 1 826 0 1785 235 69 21 chr3 120034782 120035348 -98001810 + L1ME1 LINE L1 5574 6166 0 369 270 130 0 chr3 120035440 120035540 -98001618 - L2 LINE L2 -1 3271 3159 1766 181 74 2 chr3 120036262 120036655 -98000503 + MER67C LTR ERV1 290 710 0 408 340 82 19 chr3 120037960 120038166 -97998992 - MIR SINE MIR 0 262 44 192 40 0 0 chr3 120038437 120038462 -97998696 + (CCCTAG)n Simple_repeat Simple_repeat 3 27 0 21 0 0 0 chr3 120039232 120039253 -97997905 + AT_rich Low_complexity Low_complexity 1 21 0 476 314 17 29 chr3 120039661 120039836 -97997322 + MIR SINE MIR 77 249 -13 522 143 0 0 chr3 120040571 120040655 -97996503 - AluY SINE Alu -12 299 216 325 296 212 17 chr3 120040720 120040899 -97996259 + MIR SINE MIR 47 260 -2 210 298 0 0 chr3 120040916 120040963 -97996195 - L2 LINE L2 -36 3236 3190 21 36 0 0 chr3 120041261 120041289 -97995869 + AT_rich Low_complexity Low_complexity 1 28 0 370 249 178 30 chr3 120042154 120042351 -97994807 - L1ME LINE L1 -303 5818 5593 5528 132 13 22 chr3 120042942 120044375 -97992783 - L1PA16 LINE L1 -3 6866 5440 2060 98 56 7 chr3 120044386 120044672 -97992486 - AluSg SINE Alu -10 300 1 7752 15 0 0 chr3 120044787 120046100 -97991058 - L1PA3 LINE L1 -19 6136 4824 5373 181 26 4 chr3 120046201 120047145 -97990013 - L1PA15-16 LINE L1 -5870 979 15 476 89 13 0 chr3 120047245 120047324 -97989834 + (TA)n Simple_repeat Simple_repeat 2 81 0 2058 108 0 0 chr3 120047424 120047693 -97989465 - AluSg SINE Alu -41 269 1 264 91 45 0 chr3 120048566 120048610 -97988548 - LTR5 LTR ERVK 0 969 924 11335 203 32 18 chr3 120048710 120049882 -97987276 - L1PA16 LINE L1 -1607 5242 4088 2063 148 73 14 chr3 120049882 120050226 -97986932 + THE1B LTR MaLR 1 364 0 11335 203 32 18 chr3 120050226 120053469 -97983689 - L1PA16 LINE L1 -2761 4088 790 1080 188 96 7 chr3 120053569 120053840 -97983318 + L1M4 LINE L1 4024 4318 -1828 315 0 0 0 chr3 120053923 120053958 -97983200 + (TG)n Simple_repeat Simple_repeat 2 36 0 374 314 87 32 chr3 120053971 120054223 -97982935 + L1ME LINE L1 5137 5402 -744 344 238 248 10 chr3 120054352 120054427 -97982731 + L1ME LINE L1 5502 5558 -563 11489 50 8 1 chr3 120054427 120056652 -97980506 + L1PA6 LINE L1 3928 6154 0 344 238 248 10 chr3 120056652 120056839 -97980319 + L1ME LINE L1 5558 5794 -327 209 287 28 0 chr3 120056840 120056948 -97980210 + (TA)n Simple_repeat Simple_repeat 1 111 0 22 56 0 0 chr3 120057238 120057274 -97979884 + AT_rich Low_complexity Low_complexity 1 36 0 817 246 16 11 chr3 120057623 120057814 -97979344 - MIR SINE MIR -66 196 5 1020 274 61 16 chr3 120057981 120058488 -97978670 - L1M4 LINE L1 -1197 4949 4420 732 270 140 22 chr3 120058486 120058893 -97978265 + L1M4 LINE L1 4948 5402 -744 * 2197 189 30 9 chr3 120059844 120060303 -97976855 - L1M4 LINE L1 -2090 4056 3588 296 302 45 12 chr3 120060339 120060581 -97976577 - L1M4 LINE L1 -1164 4982 4733 2127 154 30 37 chr3 120060625 120061087 -97976071 - L1MB3 LINE L1 0 6183 5725 8672 225 30 13 chr3 120061092 120063092 -97974066 - L1M2c LINE L1 -4684 2101 7 2315 189 42 17 chr3 120063106 120063911 -97973247 - L1MB3 LINE L1 -446 5737 4924 * 10505 147 63 29 chr3 120063907 120066178 -97970980 - L1M4c LINE L1 -3906 2477 131 240 178 0 0 chr3 120066281 120066326 -97970832 - L1M4c LINE L1 -6321 63 19 566 305 0 35 chr3 120066493 120066696 -97970462 + MER58A DNA MER1_type 13 208 -16 22 35 0 0 chr3 120066818 120066847 -97970311 + AT_rich Low_complexity Low_complexity 1 29 0 368 317 65 30 chr3 120066858 120067255 -97969903 - L1MB3 LINE L1 -1824 4322 3912 245 338 57 0 chr3 120067317 120067474 -97969684 - L1MB3 LINE L1 -2357 3789 3624 371 348 0 9 chr3 120070229 120070344 -97966814 + MIR3 SINE MIR 47 160 -48 222 298 0 0 chr3 120071613 120071670 -97965488 + L2 LINE L2 2999 3055 -217 188 304 87 0 chr3 120072268 120072337 -97964821 + L3 LINE CR1 1424 1498 -79 26 0 0 0 chr3 120073368 120073394 -97963764 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr3 120073483 120073506 -97963652 + AT_rich Low_complexity Low_complexity 1 23 0 10993 28 7 1 chr3 120073593 120075644 -97961514 + L1PA6 LINE L1 4088 6143 -11 374 329 139 15 chr3 120075870 120076144 -97961014 - L2 LINE L2 -830 2484 2177 2008 224 40 11 chr3 120078184 120078752 -97958406 + L1MB5 LINE L1 4156 4740 -1406 * 2350 174 107 60 chr3 120078746 120079342 -97957816 + L1MB5 LINE L1 5551 6174 0 30 0 0 0 chr3 120079541 120079571 -97957587 + AT_rich Low_complexity Low_complexity 1 30 0 41591 64 3 0 chr3 120079895 120086026 -97951132 + L1PA5 LINE L1 1 6150 -4 222 346 137 0 chr3 120086513 120086666 -97950492 + MIR SINE MIR 35 208 -54 190 264 165 58 chr3 120087226 120087347 -97949811 - L2 LINE L2 0 3272 3139 734 304 55 0 chr3 120087580 120087781 -97949377 + MIR SINE MIR 37 248 -14 2237 118 0 7 chr3 120088237 120088543 -97948615 - AluSx SINE Alu -8 304 1 571 294 0 11 chr3 120088714 120088898 -97948260 - MER115 DNA AcHobo -10 683 502 562 303 62 22 chr3 120089022 120089200 -97947958 - MER115 DNA AcHobo -378 315 131 273 301 39 0 chr3 120089195 120089298 -97947860 + LTR16A LTR ERVL 287 393 -57 * 249 347 16 24 chr3 120089510 120089634 -97947524 - L2 LINE L2 -279 2993 2871 352 226 88 44 chr3 120090153 120090290 -97946868 - MER103 DNA DNA -11 155 13 30 27 0 0 chr3 120090351 120090388 -97946770 + AT_rich Low_complexity Low_complexity 1 37 0 200 326 87 0 chr3 120090438 120090530 -97946628 - L2 LINE L2 -5 3308 3209 211 358 101 34 chr3 120091200 120091348 -97945810 - MIR3 SINE MIR -9 199 42 25 31 0 0 chr3 120091494 120091526 -97945632 + AT_rich Low_complexity Low_complexity 1 32 0 4572 169 17 42 chr3 120091856 120092798 -97944360 - LTR5 LTR ERVK -51 918 1 647 297 96 0 chr3 120093426 120093635 -97943523 - MIR SINE MIR -32 230 2 266 320 46 122 chr3 120095138 120095598 -97941560 - L2 LINE L2 -41 3231 2807 14928 179 18 27 chr3 120095673 120100004 -97937154 - L1MA4 LINE L1 -7 6475 2189 294 36 73 0 chr3 120100009 120100064 -97937094 + (TTTA)n Simple_repeat Simple_repeat 1 59 0 42456 36 22 1 chr3 120100069 120106085 -97931073 - L1PA3 LINE L1 0 6155 8 3692 247 92 28 chr3 120106100 120107583 -97929575 - L1MA4 LINE L1 -4078 1250 539 574 328 92 55 chr3 120108007 120108749 -97928409 - L1M3a LINE L1 -5173 782 14 1430 97 0 10 chr3 120108924 120109130 -97928028 - L1PA14 LINE L1 0 6161 5958 241 262 124 33 chr3 120109170 120109380 -97927778 - L1ME LINE L1 -302 5819 5591 42526 51 2 0 chr3 120109572 120115685 -97921473 - L1PA4 LINE L1 0 6155 34 367 161 161 0 chr3 120115730 120115811 -97921347 - THE1C LTR MaLR -83 292 199 38 75 0 0 chr3 120115961 120116041 -97921117 + AT_rich Low_complexity Low_complexity 1 80 0 300 317 20 0 chr3 120116146 120116247 -97920911 - L1ME LINE L1 -1311 4835 4733 449 232 0 0 chr3 120117070 120117152 -97920006 + FLAM_A SINE Alu 40 121 -21 255 216 11 34 chr3 120117440 120117528 -97919630 + GA-rich Low_complexity Low_complexity 2 87 0 280 350 40 0 chr3 120117595 120117695 -97919463 - L2 LINE L2 0 3272 3169 6226 198 69 33 chr3 120117994 120120279 -97916879 + L1MA5 LINE L1 1420 3622 -3288 2030 142 0 0 chr3 120120279 120120561 -97916597 + AluSx SINE Alu 1 282 -30 6226 198 69 33 chr3 120120561 120122693 -97914465 + L1MA5 LINE L1 3622 6167 -743 3457 134 12 7 chr3 120122713 120123310 -97913848 + L1MA5 LINE L1 6397 6996 -6 378 0 0 0 chr3 120125285 120125327 -97911831 + (CA)n Simple_repeat Simple_repeat 2 43 0 1949 162 29 5 chr3 120126450 120126869 -97910289 - L1 LINE L1 -1249 4897 4469 1321 213 0 70 chr3 120126858 120127272 -97909886 + L1 LINE L1 4903 5287 -859 * 1181 120 15 0 chr3 120127266 120127517 -97909641 - L1M2 LINE L1 -743 5403 5219 * 3047 263 53 31 chr3 120127657 120127889 -97909269 - L1ME LINE L1 -438 5795 5569 2086 106 0 7 chr3 120127889 120128171 -97908987 + AluSx SINE Alu 1 280 -32 240 35 0 0 chr3 120128174 120128203 -97908955 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 3047 263 53 31 chr3 120128203 120130152 -97907006 - L1ME LINE L1 -665 5568 3570 5801 117 0 0 chr3 120130230 120131195 -97905963 - L1PA15 LINE L1 -7 6158 5203 4291 237 36 13 chr3 120131536 120132840 -97904318 - L1PA12 LINE L1 -5637 1944 594 2644 136 47 0 chr3 120132947 120133375 -97903783 - L1PA12 LINE L1 -7132 449 2 411 298 80 55 chr3 120133386 120133675 -97903483 - L1ME LINE L1 -5450 946 651 2156 136 0 0 chr3 120133927 120134228 -97902930 - AluSx SINE Alu -11 301 1 281 379 35 0 chr3 120134383 120134557 -97902601 - L1ME LINE L1 -6045 351 172 412 86 0 29 chr3 120134564 120134634 -97902524 + L1PA13 LINE L1 6092 6159 -4 28 48 0 0 chr3 120134634 120134676 -97902482 + AT_rich Low_complexity Low_complexity 1 42 0 37 52 0 0 chr3 120134806 120134864 -97902294 + AT_rich Low_complexity Low_complexity 1 58 0 1497 178 56 31 chr3 120135059 120135346 -97901812 - AluJo SINE Alu -15 297 4 540 211 57 176 chr3 120135369 120135913 -97901245 - L1MC5 LINE L1 -492 7469 6991 27 49 0 0 chr3 120136742 120136783 -97900375 + AT_rich Low_complexity Low_complexity 1 41 0 2129 109 0 3 chr3 120137161 120137472 -97899686 + AluSq SINE Alu 1 310 0 1732 123 0 70 chr3 120137670 120137954 -97899204 - AluSq SINE Alu -49 264 1 307 308 0 22 chr3 120138378 120138469 -97898689 - L2 LINE L2 0 3272 3184 833 123 0 27 chr3 120139325 120139471 -97897687 - L1PA15 LINE L1 -1 6164 6023 1916 247 91 25 chr3 120139519 120140248 -97896910 - L1ME3A LINE L1 -9 6161 5385 2275 101 7 0 chr3 120141247 120141545 -97895613 + AluSx SINE Alu 1 300 -12 465 97 70 18 chr3 120142278 120142392 -97894766 + CT-rich Low_complexity Low_complexity 1 120 0 772 197 67 11 chr3 120142960 120143138 -97894020 + MER5A DNA MER1_type 2 189 0 435 255 32 30 chr3 120143204 120143341 -97893817 - MIR SINE MIR -68 140 1 315 242 79 91 chr3 120143415 120143580 -97893578 + MER5B DNA MER1_type 2 164 -14 249 33 0 0 chr3 120144206 120144236 -97892922 + (CA)n Simple_repeat Simple_repeat 1 30 0 185 0 40 0 chr3 120144235 120144260 -97892898 + (TA)n Simple_repeat Simple_repeat 2 27 0 * 1685 188 11 3 chr3 120144260 120144547 -97892611 - AluJb SINE Alu -17 295 7 25 83 0 0 chr3 120144598 120144658 -97892500 + AT_rich Low_complexity Low_complexity 1 60 0 40086 58 6 0 chr3 120144670 120150783 -97886375 - L1PA5 LINE L1 -2 6152 12 385 297 54 27 chr3 120151396 120151544 -97885614 - MIR SINE MIR 0 262 111 1203 202 117 39 chr3 120151545 120151906 -97885252 + MLT2B1 LTR ERVL 1 347 -69 1749 95 32 7 chr3 120152026 120152311 -97884847 + L1MA1 LINE L1 5857 6148 -154 21 23 0 47 chr3 120152312 120152340 -97884818 + AT_rich Low_complexity Low_complexity 1 28 -13 1133 113 11 6 chr3 120152340 120152517 -97884641 + L1MA1 LINE L1 6121 6298 -4 21 23 0 47 chr3 120152517 120152531 -97884627 + AT_rich Low_complexity Low_complexity 28 41 0 4815 158 36 36 chr3 120152537 120153470 -97883688 + L1PA16 LINE L1 4389 5341 -825 3537 96 29 6 chr3 120153470 120154020 -97883138 + L1MA3 LINE L1 5742 6304 -1 4815 158 36 36 chr3 120154020 120154841 -97882317 + L1PA16 LINE L1 5341 6161 -5 1275 149 9 14 chr3 120154880 120155094 -97882064 - AluJo SINE Alu -14 298 86 401 276 69 26 chr3 120155978 120156094 -97881064 - MER5B DNA MER1_type -1 177 57 655 244 43 35 chr3 120156102 120156356 -97880802 - L1ME2 LINE L1 -7 6157 5902 409 216 37 30 chr3 120156355 120156489 -97880669 - L1ME2 LINE L1 -727 5439 5305 * 1354 259 96 11 chr3 120156496 120157068 -97880090 - L1ME2 LINE L1 -1096 5050 4430 252 0 0 0 chr3 120159032 120159060 -97878098 + (TG)n Simple_repeat Simple_repeat 2 29 0 1553 207 45 82 chr3 120159105 120159619 -97877539 + MLT1F1 LTR MaLR 76 505 0 420 201 18 59 chr3 120159622 120159791 -97877367 - L1ME2 LINE L1 -1733 4413 4252 329 294 81 0 chr3 120159796 120159932 -97877226 - L1ME2 LINE L1 -1965 4181 4035 4291 215 24 11 chr3 120160024 120161072 -97876086 - L1P LINE L1 -1907 4239 3179 5734 25 3 1 chr3 120161077 120161754 -97875404 - L1PA4 LINE L1 -1 6154 5477 2708 132 19 13 chr3 120161759 120162236 -97874922 + L1PA15 LINE L1 5349 5828 -337 8996 246 55 14 chr3 120162244 120165545 -97871613 + L1PA12 LINE L1 6 3218 -4366 2636 226 17 6 chr3 120165646 120166335 -97870823 + L1PA12 LINE L1 3401 4097 -3487 1231 59 6 6 chr3 120216455 120216625 -97820533 + (TTTC)n Simple_repeat Simple_repeat 4 173 0 2160 112 0 0 chr3 120216625 120216903 -97820255 - AluSx SINE Alu -33 279 2 180 77 0 0 chr3 120217162 120217188 -97819970 + (TG)n Simple_repeat Simple_repeat 2 27 0 250 219 32 24 chr3 120217356 120217479 -97819679 + (TA)n Simple_repeat Simple_repeat 2 125 0 1391 246 3 3 chr3 120217490 120217783 -97819375 - AluJo SINE Alu -17 295 3 346 245 60 54 chr3 120217842 120218026 -97819132 - L1 LINE L1 -3596 2550 2366 2352 220 79 8 chr3 120218152 120218937 -97818221 - L1M4 LINE L1 -3056 3090 2250 534 221 29 64 chr3 120218938 120219078 -97818080 + MER2 DNA MER2_type 1 135 -210 239 254 16 87 chr3 120219677 120219803 -97817355 + LTR4 LTR ERV1 1 117 -479 560 237 19 33 chr3 120220083 120220298 -97816860 + LTR4 LTR ERV1 385 596 0 2323 163 15 77 chr3 120220298 120221024 -97816134 + HERV15 LTR ERV1 1 520 -7906 2489 225 55 75 chr3 120221065 120221793 -97815365 + HERV15 LTR ERV1 675 1387 -7039 * 3272 214 20 20 chr3 120221783 120223017 -97814141 + HERV15 LTR ERV1 1704 4082 -4344 5531 196 16 39 chr3 120223058 120224162 -97812996 + HERV15 LTR ERV1 4240 5318 -3108 9897 218 24 22 chr3 120224263 120226273 -97810885 + HERV3 LTR ERV1 4734 6746 -1680 653 229 7 7 chr3 120226295 120226439 -97810719 + HERV3 LTR ERV1 8283 8426 0 313 231 113 87 chr3 120226439 120226634 -97810524 + LTR4 LTR ERV1 1 200 -396 595 238 28 37 chr3 120226849 120227063 -97810095 + LTR4 LTR ERV1 385 596 0 222 149 47 9 chr3 120227408 120227515 -97809643 + (TTATA)n Simple_repeat Simple_repeat 1 111 0 1307 128 19 5 chr3 120228072 120228283 -97808875 + MER2 DNA MER2_type 132 345 0 2363 109 0 0 chr3 120228338 120228650 -97808508 + AluSx SINE Alu 1 312 0 2559 206 110 44 chr3 120228668 120230104 -97807054 - L1MCb LINE L1 -3951 2613 951 2264 114 0 10 chr3 120230104 120230411 -97806747 - AluSg SINE Alu -3 307 4 2559 206 110 44 chr3 120230411 120230800 -97806358 - L1MCb LINE L1 -5613 951 589 344 244 35 70 chr3 120230822 120230937 -97806221 + LTR4 LTR ERV1 7 117 -479 807 257 18 35 chr3 120231182 120231466 -97805692 + LTR4 LTR ERV1 318 596 0 1598 288 18 55 chr3 120231468 120232082 -97805076 - L1MCb LINE L1 -5454 591 1 1763 247 43 36 chr3 120232106 120232559 -97804599 - L1MEc LINE L1 -1825 4390 3929 2031 141 35 35 chr3 120232559 120232934 -97804224 - THE1C LTR MaLR 0 375 1 1763 247 43 36 chr3 120232934 120233152 -97804006 - L1MEc LINE L1 -2286 3929 3714 1310 238 95 37 chr3 120233161 120233593 -97803565 - MER4C LTR ERV1 -8 457 1 5182 140 50 41 chr3 120233595 120234876 -97802282 - MER4C-int LTR ERV1 0 6598 4863 1023 128 0 0 chr3 120234876 120235024 -97802134 + AluSp/q SINE Alu 165 312 -1 4604 189 37 47 chr3 120235024 120236177 -97800981 - MER83B-int LTR ERV1 -2812 5308 4167 2366 88 0 0 chr3 120236202 120236508 -97800650 - AluY SINE Alu -5 306 1 1928 174 113 52 chr3 120236534 120237219 -97799939 - MER83B-int LTR ERV1 -1950 2930 2029 789 312 95 10 chr3 120237313 120237922 -97799236 - L1MEc LINE L1 -2570 3645 2985 27 29 0 0 chr3 120238808 120238842 -97798316 + AT_rich Low_complexity Low_complexity 1 34 0 225 132 0 0 chr3 120239626 120239664 -97797494 + (T)n Simple_repeat Simple_repeat 1 38 0 443 211 23 47 chr3 120240467 120240595 -97796563 + LTR25 LTR ERV1 232 356 -438 243 311 12 38 chr3 120240619 120240727 -97796431 + MER61E LTR ERV1 75 189 -380 991 141 23 17 chr3 120240778 120240955 -97796203 + MER61E LTR ERV1 341 518 -51 465 270 60 60 chr3 120241186 120241419 -97795739 - L1MEc LINE L1 -4106 2290 2058 198 0 0 0 chr3 120241445 120241467 -97795691 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 3448 129 20 42 chr3 120241467 120242062 -97795096 - L1MA5A LINE L1 -9 6288 5706 1674 190 0 0 chr3 120242062 120242373 -97794785 + AluJo SINE Alu 3 313 0 3448 129 20 42 chr3 120242373 120242435 -97794723 - L1MA5A LINE L1 -591 5706 5644 1834 139 0 4 chr3 120243242 120243516 -97793642 - AluSq SINE Alu 0 313 41 2071 95 0 4 chr3 120244423 120244697 -97792461 - AluSq SINE Alu 0 313 41 238 316 164 11 chr3 120245584 120245761 -97791397 + MIR SINE MIR 59 262 0 241 186 12 35 chr3 120245837 120245923 -97791235 + (TTTA)n Simple_repeat Simple_repeat 3 86 0 702 352 83 15 chr3 120246662 120247060 -97790098 - L2 LINE L2 -660 2654 2230 279 265 10 20 chr3 120247663 120247765 -97789393 - L1M2 LINE L1 -865 5432 5332 2247 103 0 10 chr3 120247802 120247969 -97789189 - AluSx SINE Alu -13 299 135 2219 89 10 13 chr3 120247969 120248272 -97788886 - AluSq SINE Alu -7 306 5 2247 103 0 10 chr3 120248272 120248406 -97788752 - AluSx SINE Alu -177 135 1 660 330 158 17 chr3 120248606 120249260 -97787898 - L1M4 LINE L1 -1575 4571 3826 244 317 10 0 chr3 120249272 120249373 -97787785 - L1M4 LINE L1 -2414 3732 3631 498 254 118 58 chr3 120249514 120249861 -97787297 - L1M4 LINE L1 -2698 3448 3081 1308 176 0 17 chr3 120250119 120250352 -97786806 - AluJb SINE Alu -19 293 65 29 60 0 0 chr3 120250394 120250444 -97786714 + AT_rich Low_complexity Low_complexity 1 50 0 227 204 0 0 chr3 120250608 120250657 -97786501 + A-rich Low_complexity Low_complexity 2 50 0 418 164 0 11 chr3 120250680 120250760 -97786398 + AluJ/FLAM SINE Alu 1 62 -240 1054 265 9 19 chr3 120250851 120251176 -97785982 + L1ME3A LINE L1 5658 5979 -191 2268 50 3 11 chr3 120251177 120251460 -97785698 + AluY SINE Alu 1 281 -30 1307 215 70 3 chr3 120251503 120251787 -97785371 + AluJo SINE Alu 1 303 -9 644 129 0 17 chr3 120251932 120252024 -97785134 + (GGA)n Simple_repeat Simple_repeat 3 94 -22 2447 58 0 0 chr3 120252024 120252319 -97784839 + AluY SINE Alu 1 295 -16 644 129 0 17 chr3 120252319 120252342 -97784816 + (GGA)n Simple_repeat Simple_repeat 94 116 0 25 65 0 0 chr3 120252458 120252504 -97784654 + AT_rich Low_complexity Low_complexity 1 46 0 285 270 124 0 chr3 120254129 120254218 -97782940 - MIR SINE MIR -5 257 158 332 262 201 0 chr3 120254220 120254369 -97782789 - MIR SINE MIR -9 253 75 184 403 31 0 chr3 120257075 120257204 -97779954 - L2 LINE L2 -292 2980 2848 411 268 16 55 chr3 120257346 120257473 -97779685 + L2 LINE L2 3150 3271 -1 1485 191 65 12 chr3 120257481 120257806 -97779352 + MER2 DNA MER2_type 2 343 -1 1104 266 8 4 chr3 120258563 120258815 -97778343 + MIR SINE MIR 2 254 -8 238 295 14 29 chr3 120261953 120262092 -97775066 - L1MEd LINE L1 -5037 1082 946 314 356 52 0 chr3 120263605 120263740 -97773418 + MIR3 SINE MIR 52 193 -15 330 272 146 69 chr3 120264161 120264407 -97772751 - HAL1 LINE L1 -1129 1378 1114 271 309 81 121 chr3 120266108 120266380 -97770778 - L2 LINE L2 -1 3271 3011 213 370 98 0 chr3 120266979 120267071 -97770087 - L2 LINE L2 -1 3271 3171 374 195 65 24 chr3 120267239 120267362 -97769796 + L1ME4a LINE L1 5979 6106 -15 362 300 193 18 chr3 120267366 120267589 -97769569 + MIR SINE MIR 1 262 0 21 0 0 0 chr3 120267595 120267616 -97769542 + AT_rich Low_complexity Low_complexity 1 21 0 214 347 0 0 chr3 120268366 120268438 -97768720 + L2 LINE L2 3200 3271 -1 376 264 24 32 chr3 120269140 120269265 -97767893 - MIR SINE MIR -67 141 18 2137 147 95 3 chr3 120269738 120270126 -97767032 - MSTB1 LTR MaLR -8 424 1 243 0 0 0 chr3 120270573 120270600 -97766558 + (GA)n Simple_repeat Simple_repeat 1 27 0 234 81 0 0 chr3 120271327 120271364 -97765794 + (GTTTG)n Simple_repeat Simple_repeat 3 39 0 2139 175 83 33 chr3 120272677 120273158 -97764000 - MLT1D LTR MaLR 0 505 1 1609 99 22 11 chr3 120274388 120274661 -97762497 - L1MA8 LINE L1 -3 6288 6013 715 200 35 29 chr3 120274839 120275009 -97762149 + MIR SINE MIR 54 224 -38 2541 49 7 0 chr3 120275012 120275319 -97761839 + AluY SINE Alu 1 309 -2 367 182 0 0 chr3 120275393 120275459 -97761699 + MER63 DNA MER1_type 686 751 -85 3258 154 50 5 chr3 120275746 120276105 -97761053 - MER6A DNA MER2_type -260 605 209 258 105 0 0 chr3 120276105 120276143 -97761015 + (CA)n Simple_repeat Simple_repeat 1 38 0 3258 154 50 5 chr3 120276143 120276361 -97760797 - MER6A DNA MER2_type -656 209 2 241 174 29 14 chr3 120276916 120276985 -97760173 + GA-rich Low_complexity Low_complexity 3 72 0 192 284 0 30 chr3 120277501 120277568 -97759590 + L3 LINE CR1 1230 1294 -283 524 301 41 78 chr3 120277655 120278067 -97759091 - L2 LINE L2 0 3313 2917 2106 130 0 0 chr3 120278082 120278367 -97758791 + AluSx SINE Alu 5 289 -23 540 271 145 5 chr3 120278395 120278602 -97758556 + MER5C DNA MER1_type 1 236 -88 216 411 0 0 chr3 120278726 120278799 -97758359 - MIR SINE MIR -109 99 27 1760 180 0 31 chr3 120279056 120279378 -97757780 - AluJo SINE Alu 0 312 1 2453 34 41 0 chr3 120280963 120281255 -97755903 + AluY SINE Alu 1 304 -7 325 224 0 0 chr3 120281302 120281378 -97755780 - L1MC4a LINE L1 -917 6891 6816 650 153 21 35 chr3 120281531 120281675 -97755483 - Charlie1 DNA MER1_type 0 2761 2620 * 826 237 20 10 chr3 120281663 120281861 -97755297 - Charlie1 DNA MER1_type -2524 237 38 1614 168 63 7 chr3 120282764 120283049 -97754109 - AluJo SINE Alu -11 301 1 1206 288 105 35 chr3 120283431 120283922 -97753236 + L2 LINE L2 2471 2992 -321 1314 193 113 3 chr3 120284229 120284530 -97752628 - MER2 DNA MER2_type 0 345 12 2191 129 10 0 chr3 120285505 120285873 -97751285 - AluSq SINE Alu 0 371 1 1337 100 5 10 chr3 120287075 120287275 -97749883 - L1PA10 LINE L1 -16 6152 5954 6729 144 38 4 chr3 120287298 120288488 -97748670 + Tigger3b DNA MER2_type 1 1230 -1 285 182 15 83 chr3 120288549 120288681 -97748477 - L1ME4a LINE L1 -2 6119 5997 273 269 65 81 chr3 120289019 120289205 -97747953 - MIR SINE MIR -3 259 77 279 274 12 12 chr3 120289616 120289700 -97747458 - L2 LINE L2 -3 3310 3227 186 181 306 14 chr3 120289763 120289835 -97747323 - L2 LINE L2 -337 2976 2884 212 57 0 29 chr3 120290212 120290247 -97746911 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr3 120290250 120290271 -97746887 + AT_rich Low_complexity Low_complexity 1 21 0 344 257 29 9 chr3 120290271 120290376 -97746782 - L1PB4 LINE L1 0 6156 6050 255 241 63 25 chr3 120290421 120290500 -97746658 - MIR3 SINE MIR -2 206 125 658 284 78 64 chr3 120290650 120291072 -97746086 - ERVL LTR ERVL -2076 3688 3261 2159 117 7 10 chr3 120291080 120291387 -97745771 - AluSx SINE Alu -1 311 6 277 328 139 35 chr3 120291801 120291879 -97745279 + L3 LINE CR1 1230 1298 -279 1173 244 195 12 chr3 120291879 120292305 -97744853 + MLT1D LTR MaLR 2 505 0 277 328 139 35 chr3 120292305 120292427 -97744731 + L3 LINE CR1 1298 1451 -126 774 308 162 9 chr3 120293125 120293576 -97743582 + L2 LINE L2 1890 2409 -905 3320 163 73 25 chr3 120293576 120294307 -97742851 - LTR1B LTR ERV1 0 785 1 1808 187 43 32 chr3 120294338 120294877 -97742281 - MLT2A2 LTR ERVL -9 545 1 229 368 246 7 chr3 120294990 120295262 -97741896 + L2 LINE L2 2552 2888 -426 299 314 73 0 chr3 120295587 120295711 -97741447 - MIR SINE MIR -30 232 100 2248 155 28 2 chr3 120295794 120296187 -97740971 + MSTB1 LTR MaLR 30 432 0 225 250 15 15 chr3 120296328 120296396 -97740762 + CT-rich Low_complexity Low_complexity 4 71 0 2112 113 10 17 chr3 120296578 120296880 -97740278 - AluSq SINE Alu -10 303 4 2226 86 10 0 chr3 120297859 120298150 -97739008 - AluY SINE Alu -15 296 3 7491 105 11 0 chr3 120299231 120300307 -97736851 + THE1A-int LTR MaLR 493 1580 0 2436 93 11 11 chr3 120300307 120300662 -97736496 + THE1A LTR MaLR 1 355 0 1798 125 43 10 chr3 120301685 120301990 -97735168 - MER51B LTR ERV1 0 377 63 851 178 0 0 chr3 120302076 120302211 -97734947 + AluJb SINE Alu 156 290 -22 1457 125 4 42 chr3 120302443 120302683 -97734475 + AluSg/x SINE Alu 76 306 -6 1857 281 67 69 chr3 120302864 120303775 -97733383 + L2 LINE L2 8 919 -2395 760 187 29 145 chr3 120303775 120304016 -97733142 + MER20 DNA MER1_type 3 215 -4 1857 281 67 69 chr3 120304016 120304061 -97733097 + L2 LINE L2 919 963 -2351 1652 211 83 14 chr3 120304061 120304497 -97732661 + MLT1C LTR MaLR 2 467 0 1857 281 67 69 chr3 120304497 120304559 -97732599 + L2 LINE L2 963 1025 -2289 2173 87 38 0 chr3 120305248 120305535 -97731623 + AluSq SINE Alu 1 298 -15 15386 147 26 16 chr3 120305875 120308563 -97728595 + Tigger2 DNA MER2_type 4 2718 0 249 33 0 0 chr3 120308634 120308664 -97728494 + (TA)n Simple_repeat Simple_repeat 2 31 0 193 335 47 42 chr3 120309588 120309722 -97727436 + L2 LINE L2 2915 3055 -258 363 245 41 0 chr3 120309936 120310034 -97727124 + MIR SINE MIR 38 139 -123 4840 182 49 36 chr3 120310335 120311583 -97725575 - L1MC1 LINE L1 0 6333 5060 2979 140 50 31 chr3 120312587 120312940 -97724218 - MER41C LTR ERV1 0 554 186 2278 107 3 0 chr3 120312940 120313239 -97723919 + AluSx SINE Alu 1 300 -12 2979 140 50 31 chr3 120313239 120313429 -97723729 - MER41C LTR ERV1 -368 186 1 280 333 89 36 chr3 120313750 120313918 -97723240 + MIR SINE MIR 28 204 -58 245 310 71 3 chr3 120314135 120314234 -97722924 + MIR SINE MIR 38 140 -68 605 102 10 10 chr3 120314688 120314786 -97722372 + MER4A LTR ERV1 1 98 -566 1530 134 3 92 chr3 120314830 120315136 -97722022 + MER4A LTR ERV1 372 650 -14 2452 72 0 25 chr3 120315207 120315526 -97721632 + AluY SINE Alu 1 311 0 1760 115 0 87 chr3 120317431 120317752 -97719406 - MER4A LTR ERV1 0 664 372 3541 58 2 2 chr3 120317768 120318216 -97718942 + LTR7 LTR ERV1 1 448 -2 276 75 25 0 chr3 120318219 120318259 -97718899 - MER4A LTR ERV1 -363 301 261 566 124 21 10 chr3 120318259 120318356 -97718802 - MER4A LTR ERV1 -566 98 1 4247 99 80 22 chr3 120318360 120318446 -97718712 - MER4A-int LTR ERV1 0 6598 6518 2547 95 63 23 chr3 120318446 120318877 -97718281 - LTR7 LTR ERV1 -2 448 1 4247 99 80 22 chr3 120318877 120319549 -97717609 - MER4A-int LTR ERV1 -80 6518 5796 1074 95 58 15 chr3 120319555 120319878 -97717280 - LTR7 LTR ERV1 -4 446 1 10222 104 62 16 chr3 120319878 120321572 -97715586 - MER4A-int LTR ERV1 -802 5796 4014 1665 122 0 0 chr3 120321572 120321802 -97715356 + AluSg/x SINE Alu 71 300 -10 10222 104 62 16 chr3 120321802 120321910 -97715248 - MER4A-int LTR ERV1 -2584 4014 3912 1855 78 146 16 chr3 120321956 120322340 -97714818 - MER4A-int LTR ERV1 -3321 3277 2844 815 177 177 0 chr3 120322354 120322540 -97714618 + LTR8 LTR ERV1 39 257 -434 3446 96 82 53 chr3 120322540 120323168 -97713990 - MER4-int LTR ERV1 -4103 2495 1842 2059 107 7 0 chr3 120323168 120323440 -97713718 + AluSx SINE Alu 19 292 -20 3446 96 82 53 chr3 120323440 120323530 -97713628 - MER4-int LTR ERV1 -4756 1842 1756 297 89 0 0 chr3 120323547 120323592 -97713566 + (CA)n Simple_repeat Simple_repeat 2 46 0 1936 102 31 11 chr3 120323594 120323940 -97713218 - MER4-int LTR ERV1 -5613 1145 728 213 65 0 0 chr3 120323940 120323971 -97713187 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1936 102 31 11 chr3 120323971 120324155 -97713003 - MER4-int LTR ERV1 -6030 728 549 2154 128 13 3 chr3 120324188 120324492 -97712666 - AluSx SINE Alu -5 307 1 187 234 0 64 chr3 120324621 120324668 -97712490 + L2 LINE L2 3205 3248 -24 1173 147 28 0 chr3 120324695 120324913 -97712245 - L1MA9 LINE L1 0 6312 6089 3909 46 27 0 chr3 120325125 120325602 -97711556 - LTR2B LTR ERV1 0 490 1 453 298 43 108 chr3 120325764 120326294 -97710864 + MLT1K LTR MaLR 45 540 -48 242 217 14 0 chr3 120326765 120326834 -97710324 + GA-rich Low_complexity Low_complexity 2 71 0 237 83 0 0 chr3 120326882 120326918 -97710240 + (A)n Simple_repeat Simple_repeat 1 36 0 48 0 0 0 chr3 120327410 120327458 -97709700 + AT_rich Low_complexity Low_complexity 1 48 0 737 331 81 25 chr3 120327747 120328182 -97708976 - L2 LINE L2 -569 2745 2287 359 222 62 0 chr3 120328221 120328302 -97708856 + Tigger7 DNA MER2_type 2502 2587 0 2198 76 35 0 chr3 120328788 120329077 -97708081 - AluY SINE Alu -12 299 1 29 106 0 0 chr3 120330032 120330145 -97707013 + AT_rich Low_complexity Low_complexity 1 113 0 523 176 56 0 chr3 120330235 120330360 -97706798 - L1MC3 LINE L1 -1 7784 7653 249 105 0 0 chr3 120330366 120330404 -97706754 - L1 LINE L1 -1579 4567 4530 1970 218 16 14 chr3 120330409 120330918 -97706240 - L1 LINE L1 -781 6325 5816 1530 174 15 3 chr3 120330913 120331246 -97705912 - L1 LINE L1 -1526 5580 5244 * 284 262 18 77 chr3 120331243 120331411 -97705747 - L1 LINE L1 -5111 1919 1762 * 981 280 25 64 chr3 120331974 120332459 -97704699 - L1 LINE L1 -5807 1230 765 2298 98 0 0 chr3 120333214 120333509 -97703649 + AluSc SINE Alu 1 295 -14 377 371 13 13 chr3 120333538 120333697 -97703461 + L2 LINE L2 2816 2974 -298 3999 116 22 6 chr3 120333729 120334375 -97702783 - L1MA2 LINE L1 0 6304 5649 2430 171 83 25 chr3 120334376 120334892 -97702266 - MER21A LTR ERV1 0 931 386 1235 151 78 8 chr3 120334896 120335141 -97702017 - MER21A LTR ERV1 -667 264 3 618 256 78 78 chr3 120335173 120335481 -97701677 + L2 LINE L2 3006 3313 0 3101 158 12 29 chr3 120335529 120336125 -97701033 + LTR60 LTR ERV1 1 586 0 3478 60 0 7 chr3 120336429 120336880 -97700278 - LTR7 LTR ERV1 -2 448 1 1055 66 12 30 chr3 120336880 120337046 -97700112 - HERVH LTR ERV1 0 7713 7551 * 1456 117 0 22 chr3 120337037 120337268 -97699890 - HERVH LTR ERV1 -3000 4713 4488 3217 107 4 6 chr3 120337270 120337773 -97699385 - HERVH LTR ERV1 -3720 3993 3492 928 120 7 0 chr3 120337763 120337913 -97699245 - HERVH LTR ERV1 -4423 3290 3140 * 19755 87 7 20 chr3 120337892 120340929 -97696229 - HERVH LTR ERV1 -4718 2995 1 3459 55 0 9 chr3 120340931 120341383 -97695775 - LTR7 LTR ERV1 -2 448 1 261 278 125 72 chr3 120341406 120341838 -97695320 - L1M4 LINE L1 -1103 5043 4589 341 338 60 30 chr3 120341960 120342161 -97694997 - MIR SINE MIR -42 220 14 24 0 0 0 chr3 120342775 120342799 -97694359 + AT_rich Low_complexity Low_complexity 1 24 0 29 0 0 0 chr3 120343344 120343373 -97693785 + AT_rich Low_complexity Low_complexity 1 29 0 731 233 111 117 chr3 120343563 120344112 -97693046 + HAL1 LINE L1 832 1377 -1130 2021 161 59 43 chr3 120344204 120344626 -97692532 - MSTB1 LTR MaLR 0 432 4 22 0 0 30 chr3 120344846 120344857 -97692301 + AT_rich Low_complexity Low_complexity 1 11 -21 1781 83 140 11 chr3 120344857 120345121 -97692037 - AluY SINE Alu -13 298 1 22 0 0 30 chr3 120345121 120345142 -97692016 + AT_rich Low_complexity Low_complexity 11 32 0 1723 212 39 21 chr3 120345208 120345595 -97691563 + MSTD LTR MaLR 1 394 -2 5206 224 100 55 chr3 120345595 120347239 -97689919 + MSTD-int LTR MaLR 3 1721 -14 1511 219 35 9 chr3 120347252 120347599 -97689559 + MSTD LTR MaLR 1 356 -40 635 126 0 39 chr3 120347618 120347721 -97689437 + FLAM_C SINE Alu 23 121 -22 228 196 0 0 chr3 120347736 120347782 -97689376 + MSTD LTR MaLR 411 456 -1 211 324 40 27 chr3 120348113 120348187 -97688971 + MIR3 SINE MIR 118 192 -16 526 178 35 99 chr3 120348757 120348854 -97688304 - MER53 DNA DNA 0 189 87 2087 121 88 21 chr3 120348854 120349194 -97687964 + THE1B LTR MaLR 1 363 -1 11367 104 6 6 chr3 120349195 120350775 -97686383 + THE1B-int LTR MaLR 1 1580 0 2078 106 88 24 chr3 120350777 120351117 -97686041 + THE1B LTR MaLR 3 364 0 526 178 35 99 chr3 120351117 120351153 -97686005 - MER53 DNA DNA -103 86 49 1957 168 3 7 chr3 120351153 120351456 -97685702 - AluSx SINE Alu -10 302 1 526 178 35 99 chr3 120351456 120351518 -97685640 - MER53 DNA DNA -140 49 1 223 256 128 0 chr3 120351554 120351632 -97685526 + L2 LINE L2 3185 3272 0 23 68 0 0 chr3 120352292 120352336 -97684822 + AT_rich Low_complexity Low_complexity 1 44 0 309 239 76 22 chr3 120352475 120352567 -97684591 + MIR SINE MIR 108 204 -58 2240 112 0 3 chr3 120352847 120353141 -97684017 + AluSc SINE Alu 1 293 -16 360 0 0 0 chr3 120353164 120353204 -97683954 + (TAGA)n Simple_repeat Simple_repeat 2 41 0 246 105 0 0 chr3 120353261 120353299 -97683859 + (TC)n Simple_repeat Simple_repeat 1 38 0 431 312 82 33 chr3 120354062 120354610 -97682548 + HAL1 LINE L1 1128 1702 -805 876 332 7 12 chr3 120354634 120355050 -97682108 + L1PA16 LINE L1 2 415 -7166 720 297 31 10 chr3 120355717 120356079 -97681079 + L1PA16 LINE L1 2182 2542 -5032 11585 215 22 10 chr3 120356081 120356182 -97680976 + L1PA16 LINE L1 3528 3626 -3978 2541 50 0 3 chr3 120356182 120356483 -97680675 + AluY SINE Alu 1 300 -11 11585 215 22 10 chr3 120356483 120357176 -97679982 + L1PA16 LINE L1 3626 4309 -3295 2114 108 3 17 chr3 120357176 120357473 -97679685 + AluSc SINE Alu 1 293 -16 11585 215 22 10 chr3 120357473 120360601 -97676557 + L1PA16 LINE L1 4309 7492 -112 251 136 0 0 chr3 120360601 120360645 -97676513 - L1PA16 LINE L1 -19 6147 6104 349 292 14 28 chr3 120360981 120361125 -97676033 + L1ME2 LINE L1 5951 6092 -72 1460 138 27 0 chr3 120361359 120361620 -97675538 + L1MB7 LINE L1 5703 5970 -214 2617 39 0 0 chr3 120361780 120362088 -97675070 + AluY SINE Alu 1 308 -3 221 337 161 20 chr3 120362926 120363175 -97673983 + L2 LINE L2 2446 2729 -585 318 106 0 0 chr3 120364209 120364256 -97672902 - AluSp/q SINE Alu -8 295 249 540 186 21 190 chr3 120364592 120364919 -97672239 - LTR16A1 LTR ERVL -179 278 7 2126 158 29 43 chr3 120366118 120366183 -97670975 - MLT2D LTR ERVL 0 414 350 2209 124 0 16 chr3 120366183 120366498 -97670660 - AluSg SINE Alu 0 310 1 2126 158 29 43 chr3 120366498 120366850 -97670308 - MLT2D LTR ERVL -64 350 3 251 146 0 0 chr3 120367612 120367653 -97669505 - MER67A LTR ERV1 0 543 503 1369 238 65 52 chr3 120367661 120367970 -97669188 + L1ME3A LINE L1 5561 5864 -306 2736 74 8 0 chr3 120367970 120368322 -97668836 - THE1A LTR MaLR 0 355 1 1369 238 65 52 chr3 120368322 120368342 -97668816 + L1ME3A LINE L1 5864 5882 -288 2132 215 15 11 chr3 120368342 120368797 -97668361 + LTR40b LTR ERVL 4 460 -2 1369 238 65 52 chr3 120368797 120369068 -97668090 + L1ME3A LINE L1 5882 6170 0 2153 121 3 3 chr3 120370726 120371033 -97666125 + AluSc SINE Alu 1 307 -2 376 371 72 60 chr3 120371128 120371476 -97665682 - L2 LINE L2 -3 3269 2918 2264 78 0 36 chr3 120371717 120372025 -97665133 + AluY SINE Alu 1 297 -14 227 216 0 0 chr3 120373844 120373895 -97663263 - MLT1K LTR MaLR -17 571 521 445 221 57 8 chr3 120373896 120374018 -97663140 + MIR SINE MIR 106 233 -29 266 230 14 40 chr3 120374379 120374453 -97662705 + L2 LINE L2 3201 3272 0 947 204 0 0 chr3 120374892 120375064 -97662094 + FRAM SINE Alu 5 176 0 390 299 149 46 chr3 120375072 120375400 -97661758 - L1MC4a LINE L1 -1400 6408 6047 1005 263 21 4 chr3 120376550 120376793 -97660365 + MIR SINE MIR 14 260 -2 21 0 0 0 chr3 120377368 120377389 -97659769 + AT_rich Low_complexity Low_complexity 1 21 0 210 406 53 0 chr3 120378414 120378547 -97658611 + L2 LINE L2 3114 3253 -19 322 331 205 0 chr3 120378880 120379031 -97658127 - MER5A DNA MER1_type -4 185 4 270 303 128 9 chr3 120379062 120379171 -97657987 - L2 LINE L2 -2 3270 3149 826 178 51 34 chr3 120379254 120379490 -97657668 + L1PA16 LINE L1 5926 6165 -1 1581 151 21 0 chr3 120379532 120379823 -97657335 + L1MC1 LINE L1 5255 5551 -793 788 285 16 40 chr3 120380161 120380414 -97656744 - MIR SINE MIR -4 258 12 243 294 59 29 chr3 120380403 120380505 -97656653 + MIR SINE MIR 158 262 0 * 259 244 89 32 chr3 120381488 120381611 -97655547 + MLT1J LTR MaLR 1 130 -381 3877 126 29 33 chr3 120382260 120382687 -97654471 + L1PA13 LINE L1 5495 5919 -244 2494 40 0 43 chr3 120382687 120383010 -97654148 + AluY SINE Alu 1 309 -2 3877 126 29 33 chr3 120383010 120383243 -97653915 + L1PA13 LINE L1 5919 6152 -11 3207 152 64 3 chr3 120383248 120383859 -97653299 + L1MC1 LINE L1 5679 6326 -7 285 411 11 11 chr3 120383978 120384158 -97653000 + MER5A DNA MER1_type 7 186 -3 279 0 0 0 chr3 120385040 120385071 -97652087 + (CA)n Simple_repeat Simple_repeat 2 32 0 2430 56 3 10 chr3 120387194 120387500 -97649658 - AluY SINE Alu -6 305 2 428 62 15 0 chr3 120388411 120388476 -97648682 - L1MB7 LINE L1 -20 6164 6099 23 78 0 0 chr3 120388947 120388998 -97648160 + AT_rich Low_complexity Low_complexity 1 51 0 194 261 43 0 chr3 120391492 120391538 -97645620 - MIR SINE MIR -164 98 51 407 191 55 27 chr3 120391716 120391826 -97645332 - MER112 DNA MER1_type -20 240 128 712 169 17 58 chr3 120391849 120392021 -97645137 + MER20 DNA MER1_type 34 198 -21 189 0 0 0 chr3 120392103 120392124 -97645034 + (TTG)n Simple_repeat Simple_repeat 2 22 0 2074 123 14 0 chr3 120392184 120392476 -97644682 + AluSx SINE Alu 1 296 -16 182 359 103 34 chr3 120393158 120393275 -97643883 + L2 LINE L2 3163 3287 -26 2270 131 0 3 chr3 120393372 120393685 -97643473 - AluSx SINE Alu 0 312 1 21 0 0 0 chr3 120393987 120394008 -97643150 + AT_rich Low_complexity Low_complexity 1 21 0 214 339 25 34 chr3 120394448 120394566 -97642592 - L2 LINE L2 -219 3053 2937 214 359 97 10 chr3 120395053 120395156 -97642002 + L2 LINE L2 2766 2877 -437 235 281 0 0 chr3 120395254 120395311 -97641847 - MER91A DNA MER1_type -118 78 22 32 43 0 0 chr3 120395532 120395578 -97641580 + AT_rich Low_complexity Low_complexity 1 46 0 304 323 40 40 chr3 120395824 120395948 -97641210 - L2 LINE L2 -1 3271 3148 273 315 25 46 chr3 120396195 120396433 -97640725 + MARNA DNA Mariner 24 256 -330 4098 198 60 33 chr3 120396442 120398538 -97638620 - L1MB5 LINE L1 -8 6166 4007 220 273 0 0 chr3 120398822 120398877 -97638281 + A-rich Low_complexity Low_complexity 4 58 0 183 273 36 0 chr3 120399672 120399727 -97637431 + L2 LINE L2 3256 3312 -1 1239 161 126 79 chr3 120399749 120400179 -97636979 + LTR7 LTR ERV1 1 450 0 1557 218 58 16 chr3 120400180 120400560 -97636598 - MSTD LTR MaLR 0 396 1 2767 234 176 50 chr3 120400560 120401827 -97635331 - MSTD-int LTR MaLR 0 1651 225 23 0 0 0 chr3 120402433 120402456 -97634702 + AT_rich Low_complexity Low_complexity 1 23 0 2340 99 3 6 chr3 120402906 120403218 -97633940 - AluSp SINE Alu -2 311 1 205 302 48 0 chr3 120403346 120403409 -97633749 - L2 LINE L2 -77 3236 3171 2289 105 3 0 chr3 120403456 120403752 -97633406 + AluSx SINE Alu 1 297 -15 213 313 50 12 chr3 120404168 120404248 -97632910 + MIR3 SINE MIR 74 156 -52 2298 84 3 13 chr3 120404805 120405113 -97632045 - AluSq SINE Alu -8 305 1 1042 93 7 0 chr3 120405329 120405469 -97631689 - AluSp/q SINE Alu -9 304 164 2300 73 0 22 chr3 120405600 120405917 -97631241 + AluY SINE Alu 1 310 -1 242 207 37 24 chr3 120406070 120406152 -97631006 - MER97a DNA MER1_type? -27 867 785 21 57 0 0 chr3 120406224 120406259 -97630899 + AT_rich Low_complexity Low_complexity 1 35 0 2428 224 94 7 chr3 120406382 120407072 -97630086 - MER97b DNA MER1_type? -195 858 97 2360 83 3 3 chr3 120407072 120407373 -97629785 + AluSp SINE Alu 1 301 -12 2428 224 94 7 chr3 120407373 120407423 -97629735 - MER97b DNA MER1_type? -956 97 53 235 314 110 62 chr3 120407672 120407981 -97629177 + L2 LINE L2 2369 2692 -622 2501 56 16 0 chr3 120407986 120408291 -97628867 - AluY SINE Alu -1 310 1 2149 117 0 0 chr3 120408383 120408681 -97628477 - AluSg SINE Alu -12 298 1 25 51 0 0 chr3 120409150 120409189 -97627969 + AT_rich Low_complexity Low_complexity 1 39 0 333 0 0 0 chr3 120410374 120410411 -97626747 + (CA)n Simple_repeat Simple_repeat 2 38 0 4266 71 7 12 chr3 120410769 120411347 -97625811 + L1PA8A LINE L1 5557 6131 0 823 218 114 0 chr3 120411520 120411722 -97625436 - MIR SINE MIR -34 228 4 1755 139 0 0 chr3 120413224 120413475 -97623683 - AluSq SINE Alu -62 251 1 22 80 0 0 chr3 120413543 120413593 -97623565 + AT_rich Low_complexity Low_complexity 1 50 0 670 255 60 20 chr3 120413659 120413859 -97623299 - MIR SINE MIR -7 255 48 706 131 0 0 chr3 120414351 120414450 -97622708 + AluSq SINE Alu 3 101 -212 1169 100 0 123 chr3 120414682 120414902 -97622256 + AluSq SINE Alu 111 303 -10 207 0 0 0 chr3 120415016 120415039 -97622119 + (T)n Simple_repeat Simple_repeat 1 23 0 180 111 0 0 chr3 120417663 120417690 -97619468 + (A)n Simple_repeat Simple_repeat 1 27 0 281 334 32 38 chr3 120418273 120418443 -97618715 + MER5A DNA MER1_type 1 180 -9 492 338 120 6 chr3 120418569 120418903 -97618255 + LTR16A LTR ERVL 1 372 -78 746 165 42 196 chr3 120419484 120419615 -97617543 + MLT1A2 LTR MaLR 31 180 -194 1726 193 3 3 chr3 120419615 120419900 -97617258 + AluJo SINE Alu 5 289 -23 746 165 42 196 chr3 120419900 120420126 -97617032 + MLT1A2 LTR MaLR 180 333 -41 458 191 0 0 chr3 120420133 120420222 -97616936 + AluJ/FRAM SINE Alu 224 312 0 1106 284 24 33 chr3 120420578 120420997 -97616161 - LTR16A LTR ERVL -20 430 16 3510 163 52 0 chr3 120421519 120422175 -97614983 - L1MC1 LINE L1 -4 6329 5640 252 200 0 0 chr3 120422829 120422879 -97614279 - MLT1J LTR MaLR -363 148 99 1223 156 28 0 chr3 120422929 120423141 -97614017 + MER20 DNA MER1_type 2 219 0 306 0 0 0 chr3 120423306 120423340 -97613818 + (CA)n Simple_repeat Simple_repeat 1 34 0 819 255 38 26 chr3 120423555 120423822 -97613336 - LTR16C LTR ERVL -1 490 221 1123 194 110 49 chr3 120423825 120424170 -97612988 - MLT1D LTR MaLR -2 503 138 734 263 45 24 chr3 120424167 120424414 -97612744 + LTR16C LTR ERVL 238 489 -2 * 574 177 39 8 chr3 120424506 120424636 -97612522 - MLT1D LTR MaLR -371 134 1 457 295 50 40 chr3 120424636 120424835 -97612323 - LTR16C LTR ERVL -267 224 24 2090 105 0 0 chr3 120426457 120426761 -97610397 + L1PB1 LINE L1 5848 6151 0 7528 99 41 20 chr3 120426917 120428137 -97609021 - MER4-int LTR ERV1 -1512 5086 3841 3894 137 72 44 chr3 120428142 120428393 -97608765 - MER4-int LTR ERV1 -2919 3679 3437 2303 78 14 0 chr3 120428393 120428687 -97608471 + AluY SINE Alu 1 298 -13 3894 137 72 44 chr3 120428687 120429352 -97607806 - MER4-int LTR ERV1 -3161 3437 2737 1376 150 71 0 chr3 120429352 120429592 -97607566 + LTR8 LTR ERV1 1 257 -434 4067 86 70 19 chr3 120429592 120430094 -97607064 - MER4-int LTR ERV1 -4103 2495 1946 2142 136 0 7 chr3 120430094 120430395 -97606763 - AluSx SINE Alu -13 299 1 4067 86 70 19 chr3 120430395 120430588 -97606570 - MER4-int LTR ERV1 -4652 1946 1764 201 39 0 0 chr3 120430609 120430635 -97606523 + (CA)n Simple_repeat Simple_repeat 1 26 0 2651 123 35 32 chr3 120430635 120431298 -97605860 - MER4-int LTR ERV1 -5610 1148 427 1347 134 201 27 chr3 120431306 120431635 -97605523 - Tigger2 DNA MER2_type -2332 386 1 22 35 0 0 chr3 120431869 120431898 -97605260 + AT_rich Low_complexity Low_complexity 1 29 0 238 278 107 96 chr3 120431969 120432520 -97604638 + L1ME4a LINE L1 5536 6092 -29 918 197 21 10 chr3 120432673 120432857 -97604301 + MLT1B LTR MaLR 3 188 -202 2649 160 36 2 chr3 120432857 120433307 -97603851 + MER31A LTR ERV1 1 465 -20 2828 73 15 36 chr3 120433403 120433815 -97603343 - L1PA10 LINE L1 -2 6166 5764 3581 71 22 2 chr3 120433827 120434319 -97602839 + L1PA10 LINE L1 5254 5755 -413 1005 160 62 26 chr3 120434356 120434550 -97602608 + MLT1B LTR MaLR 190 390 0 296 248 115 45 chr3 120434616 120434773 -97602385 + MER112 DNA MER1_type 1 168 -92 858 130 8 0 chr3 120435192 120435315 -97601843 + FLAM_C SINE Alu 1 124 -9 23 0 0 0 chr3 120435315 120435338 -97601820 + AT_rich Low_complexity Low_complexity 1 23 0 2159 94 53 42 chr3 120435351 120435711 -97601447 + THE1B LTR MaLR 1 364 0 492 285 155 5 chr3 120436059 120436252 -97600906 - MIR SINE MIR -35 227 6 422 205 49 102 chr3 120436531 120436736 -97600422 - L2 LINE L2 -774 2540 2347 255 281 165 34 chr3 120436969 120437281 -97599877 - L1ME LINE L1 -447 5723 5365 2919 140 86 75 chr3 120437315 120437986 -97599172 - L1MA5 LINE L1 0 6300 5622 233 303 0 0 chr3 120437982 120438048 -97599110 - L1ME LINE L1 -1263 4883 4818 * 2155 112 3 3 chr3 120438093 120438396 -97598762 + AluSp SINE Alu 1 303 -10 1245 219 3 74 chr3 120438475 120438682 -97598476 - L1MA4 LINE L1 -170 6130 5961 1911 135 0 4 chr3 120438682 120438963 -97598195 - AluSx SINE Alu -32 280 1 1245 219 3 74 chr3 120438963 120439134 -97598024 - L1MA4 LINE L1 -339 5961 5779 308 238 105 35 chr3 120439179 120439322 -97597836 + HsTC2 DNA Tc2 1631 1783 -115 2059 117 6 46 chr3 120439327 120439652 -97597506 + AluSp SINE Alu 1 312 -1 216 0 0 0 chr3 120439830 120439854 -97597304 + (A)n Simple_repeat Simple_repeat 1 24 0 382 235 96 9 chr3 120439854 120439969 -97597189 + MER5B DNA MER1_type 50 174 -4 780 228 40 0 chr3 120440072 120440274 -97596884 - MER6B DNA MER2_type 0 210 1 1409 112 51 5 chr3 120442172 120442386 -97594772 + AluSq SINE Alu 1 224 -89 1360 174 237 24 chr3 120442388 120443317 -97593841 + SATR1 Satellite Satellite 1 1126 -2 2317 160 129 43 chr3 120443334 120444811 -97592347 + SATR1 Satellite Satellite 1 1603 0 2274 175 111 11 chr3 120444840 120446410 -97590748 + SATR1 Satellite Satellite 1 1727 -3 2045 137 0 7 chr3 120446476 120446768 -97590390 + AluSx SINE Alu 4 293 -19 2220 231 104 21 chr3 120446802 120447463 -97589695 + L1MD3 LINE L1 7141 7856 -139 268 245 69 39 chr3 120447459 120447561 -97589597 + L1MC4 LINE L1 7938 8042 0 * 2046 245 82 19 chr3 120449137 120449811 -97587347 + HsTC2a DNA Tc2 4 719 -25 258 32 0 0 chr3 120450065 120450096 -97587062 + (TA)n Simple_repeat Simple_repeat 1 31 0 244 200 18 18 chr3 120450775 120450830 -97586328 + MIR SINE MIR 206 260 -2 21 36 0 0 chr3 120453027 120453055 -97584103 + AT_rich Low_complexity Low_complexity 1 28 0 31 26 0 0 chr3 120453082 120453120 -97584038 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr3 120453358 120453380 -97583778 + AT_rich Low_complexity Low_complexity 1 22 0 2522 74 0 0 chr3 120455226 120455537 -97581621 + AluY SINE Alu 1 311 0 781 266 7 16 chr3 120456310 120456640 -97580518 + AluY SINE Alu 1 327 0 22 35 0 0 chr3 120457364 120457393 -97579765 + AT_rich Low_complexity Low_complexity 1 29 0 2824 253 134 39 chr3 120458128 120459416 -97577742 + L2 LINE L2 1893 3312 -1 283 252 163 8 chr3 120459670 120459793 -97577365 - L2 LINE L2 -970 2344 2203 2210 95 10 3 chr3 120460780 120461075 -97576083 + AluSc SINE Alu 1 297 -12 189 323 148 7 chr3 120461610 120461765 -97575393 - L2 LINE L2 -23 3290 3114 2128 129 7 0 chr3 120464047 120464349 -97572809 + AluSq SINE Alu 1 304 -9 1259 132 78 5 chr3 120464442 120464661 -97572497 - MER46A DNA MER2_type -1 235 1 352 313 91 45 chr3 120464746 120464922 -97572236 - MIR SINE MIR -70 192 9 1975 175 26 3 chr3 120465465 120465814 -97571344 + MLT2D LTR ERVL 1 357 -57 528 173 0 0 chr3 120465886 120465967 -97571191 - Tigger7 DNA MER2_type 0 2491 2411 1328 189 36 16 chr3 120465978 120466227 -97570931 - Tigger7 DNA MER2_type -2212 275 22 312 102 41 0 chr3 120466230 120466279 -97570879 + MLT2D LTR ERVL 470 520 0 948 173 127 15 chr3 120466759 120466956 -97570202 + MER20 DNA MER1_type 1 219 0 234 143 95 0 chr3 120467045 120467087 -97570071 + MER20 DNA MER1_type 174 219 0 370 245 157 10 chr3 120467352 120467454 -97569704 - L2 LINE L2 0 3313 3197 254 338 128 27 chr3 120467477 120467625 -97569533 - L2 LINE L2 -6 3266 3104 2161 84 28 3 chr3 120467742 120468029 -97569129 + AluSc SINE Alu 1 294 -15 2086 89 69 0 chr3 120469197 120469488 -97567670 + AluSq SINE Alu 1 311 -2 466 297 123 9 chr3 120470489 120470701 -97566457 - MIR SINE MIR -14 248 13 21 36 0 0 chr3 120472280 120472308 -97564850 + AT_rich Low_complexity Low_complexity 1 28 0 2174 78 14 14 chr3 120472320 120472616 -97564542 - AluY SINE Alu -15 296 1 23 0 0 0 chr3 120473494 120473517 -97563641 + AT_rich Low_complexity Low_complexity 1 23 0 1205 169 131 77 chr3 120473870 120474297 -97562861 + LTR7 LTR ERV1 1 450 0 23 0 0 0 chr3 120474745 120474768 -97562390 + AT_rich Low_complexity Low_complexity 1 23 0 328 243 46 67 chr3 120475812 120475935 -97561223 - MIR3 SINE MIR -13 195 73 6492 40 21 3 chr3 120475935 120476705 -97560453 + SVA Other Other 600 1383 -3 328 243 46 67 chr3 120476705 120476737 -97560421 - MIR3 SINE MIR -135 73 42 310 49 0 0 chr3 120476814 120476855 -97560303 - AluY SINE Alu -9 291 251 871 101 180 0 chr3 120476855 120476994 -97560164 - AluY SINE Alu -146 165 2 2026 85 57 18 chr3 120477022 120477305 -97559853 + AluSc SINE Alu 1 294 -15 261 65 39 65 chr3 120478207 120478284 -97558874 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 2393 76 0 7 chr3 120478403 120478706 -97558452 - AluSp SINE Alu -12 301 1 815 282 149 33 chr3 120479019 120479506 -97557652 - L2 LINE L2 -2 3311 2768 21 0 0 0 chr3 120480468 120480489 -97556669 + AT_rich Low_complexity Low_complexity 1 21 0 209 57 29 0 chr3 120481321 120481356 -97555802 + (CGGGA)n Simple_repeat Simple_repeat 2 37 0 358 313 0 9 chr3 120482163 120482275 -97554883 + MIR3 SINE MIR 81 191 -17 2311 84 6 10 chr3 120482445 120482756 -97554402 + AluSg SINE Alu 1 310 0 6413 96 5 3 chr3 120483743 120484595 -97552563 - LTR5 LTR ERVK 0 969 117 645 26 52 0 chr3 120484596 120484673 -97552485 - LTR5 LTR ERVK -888 81 1 234 353 78 35 chr3 120484768 120484884 -97552274 - L2 LINE L2 -40 3232 3112 192 297 0 14 chr3 120485044 120485118 -97552040 - L2 LINE L2 -302 2970 2898 1971 113 34 3 chr3 120485160 120485453 -97551705 + AluSx SINE Alu 1 302 -10 246 313 163 67 chr3 120485466 120486597 -97550561 - L2 LINE L2 -443 2871 1633 2475 77 0 0 chr3 120486609 120486907 -97550251 + AluY SINE Alu 3 300 -11 1868 102 31 41 chr3 120486974 120487267 -97549891 - AluSx SINE Alu -22 290 1 227 191 0 24 chr3 120487686 120487728 -97549430 - L2 LINE L2 -8 3264 3224 268 284 313 11 chr3 120487978 120488154 -97549004 + L3 LINE CR1 147 375 -1202 787 273 189 26 chr3 120488378 120488759 -97548399 + L3 LINE CR1 404 846 -731 14497 41 3 4 chr3 120488885 120490661 -97546497 - L1P LINE L1 -1328 4818 3044 5390 86 4 19 chr3 120491543 120491620 -97545538 + LTR17 LTR ERV1 1 78 -702 2494 57 0 25 chr3 120491620 120491935 -97545223 - AluY SINE Alu -4 307 1 5390 86 4 19 chr3 120491935 120492599 -97544559 + LTR17 LTR ERV1 78 731 -49 861 211 98 68 chr3 120492678 120493033 -97544125 - MLT1F LTR MaLR 0 542 234 1370 208 55 27 chr3 120493200 120493493 -97543665 - MER21B LTR ERV1 -54 809 509 3441 133 74 3 chr3 120493493 120494072 -97543086 - LTR24C LTR ERV1 0 635 16 1984 194 30 91 chr3 120494079 120494609 -97542549 - MER21B LTR ERV1 -350 513 16 232 346 65 19 chr3 120494640 120494747 -97542411 + L2 LINE L2 3137 3248 -24 2615 98 139 12 chr3 120495022 120495099 -97542059 - MER4C LTR ERV1 -4 461 395 263 28 28 0 chr3 120495099 120495135 -97542023 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 2615 98 139 12 chr3 120495135 120495466 -97541692 - MER4C LTR ERV1 -70 395 1 195 265 20 0 chr3 120495795 120495844 -97541314 - MIR3 SINE MIR -2 206 157 1290 186 52 122 chr3 120495848 120496332 -97540826 + LTR7 LTR ERV1 1 450 0 236 200 15 0 chr3 120496410 120496475 -97540683 + CT-rich Low_complexity Low_complexity 1 66 0 1952 129 1 52 chr3 120496561 120497117 -97540041 - MER4A LTR ERV1 0 664 1 2021 142 67 6 chr3 120497189 120497790 -97539368 - MER39 LTR ERV1 -5 702 5 359 219 135 0 chr3 120498129 120498225 -97538933 + L2 LINE L2 3205 3313 0 194 139 47 0 chr3 120498731 120498774 -97538384 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 1134 262 40 76 chr3 120498971 120499444 -97537714 - LTR33A LTR ERVL -1 522 67 479 209 0 0 chr3 120501286 120501372 -97535786 + Tigger4(Zombi) DNA MER2_type 2 87 -2644 * 2399 109 80 32 chr3 120501369 120501481 -97535677 + Tigger4(Zombi) DNA MER2_type 2295 2400 -331 2230 98 0 11 chr3 120501481 120501805 -97535353 + AluY SINE Alu 1 321 0 2399 109 80 32 chr3 120501805 120502102 -97535056 + Tigger4(Zombi) DNA MER2_type 2400 2725 -6 202 363 79 33 chr3 120502162 120502377 -97534781 + L2 LINE L2 2582 2806 -508 264 350 40 0 chr3 120502393 120502493 -97534665 + MER5A DNA MER1_type 86 189 0 321 314 0 58 chr3 120502728 120502884 -97534274 - L2 LINE L2 -11 3302 3156 454 186 10 102 chr3 120502910 120503035 -97534123 + MLT1D LTR MaLR 1 107 -409 234 0 0 0 chr3 120503069 120503095 -97534063 + (TG)n Simple_repeat Simple_repeat 1 26 0 1913 175 69 10 chr3 120503570 120503959 -97533199 + MLT1D LTR MaLR 94 505 0 557 281 28 45 chr3 120504257 120504435 -97532723 - MIR SINE MIR -87 175 1 197 129 0 0 chr3 120504770 120504801 -97532357 + MIR SINE MIR 113 143 -65 317 228 174 34 chr3 120504818 120504967 -97532191 - MER5B DNA MER1_type -5 173 4 765 232 66 25 chr3 120505863 120506104 -97531054 + MIR SINE MIR 11 261 -1 1245 103 103 0 chr3 120506125 120506300 -97530858 + MER107 DNA MER1_type 5 197 0 334 267 118 44 chr3 120506453 120506588 -97530570 - L3 LINE CR1 -140 1437 1293 206 283 185 11 chr3 120506658 120506750 -97530408 - L3 LINE CR1 -392 1185 1078 355 278 28 9 chr3 120508019 120508127 -97529031 - L2 LINE L2 -14 3299 3190 23 0 0 0 chr3 120508929 120508952 -97528206 + AT_rich Low_complexity Low_complexity 1 23 0 553 228 198 5 chr3 120509365 120509562 -97527596 + L2 LINE L2 3057 3291 -22 23 0 0 0 chr3 120509564 120509587 -97527571 + AT_rich Low_complexity Low_complexity 1 23 0 255 320 90 16 chr3 120509772 120509894 -97527264 + L3 LINE CR1 989 1119 -458 2428 64 7 0 chr3 120510154 120510449 -97526709 + AluY SINE Alu 1 297 -14 774 163 177 0 chr3 120511190 120511337 -97525821 + MER21B LTR ERV1 327 499 -364 201 267 186 0 chr3 120514226 120514312 -97522846 + L2 LINE L2 3167 3268 -4 588 251 184 0 chr3 120514444 120514651 -97522507 + MIR SINE MIR 18 262 0 947 231 14 27 chr3 120514994 120515215 -97521943 - MIR SINE MIR -32 230 13 773 118 67 0 chr3 120516142 120516261 -97520897 - L1MA3 LINE L1 0 6305 6179 205 377 68 20 chr3 120516909 120517055 -97520103 - L2 LINE L2 -50 3222 3070 306 253 40 0 chr3 120517868 120517943 -97519215 - MIR SINE MIR -67 195 118 427 211 136 20 chr3 120520409 120520556 -97516602 - MER5A DNA MER1_type 0 189 26 205 325 120 34 chr3 120520916 120521033 -97516125 + MIR3 SINE MIR 10 136 -72 1566 163 15 15 chr3 120521459 120521723 -97515435 - AluJb SINE Alu -24 288 25 1540 137 172 57 chr3 120522026 120522131 -97515027 + LTR47A LTR ERVL 5 97 -355 180 0 0 0 chr3 120522131 120522151 -97515007 + (CA)n Simple_repeat Simple_repeat 2 21 0 1540 137 172 57 chr3 120522151 120522447 -97514711 + LTR47A LTR ERVL 97 452 0 285 268 113 0 chr3 120522536 120522633 -97514525 + LTR16C LTR ERVL 372 479 -12 216 326 34 22 chr3 120523262 120523351 -97513807 - MIR SINE MIR -123 139 50 1581 121 121 38 chr3 120524435 120524700 -97512458 - AluSx SINE Alu -25 287 1 2848 99 15 0 chr3 120524784 120525178 -97511980 + L1PB2 LINE L1 5752 6151 0 327 223 182 25 chr3 120525436 120525557 -97511601 + MIR SINE MIR 71 210 -52 1451 132 68 16 chr3 120526013 120526264 -97510894 + MER21A LTR ERV1 1 264 -667 1518 150 141 33 chr3 120526269 120526716 -97510442 + MER21A LTR ERV1 376 925 -6 1890 139 10 26 chr3 120528318 120528621 -97508537 - AluSx SINE Alu -12 300 3 2126 123 10 0 chr3 120528964 120529266 -97507892 + AluSx SINE Alu 1 305 -7 184 309 59 0 chr3 120529738 120529806 -97507352 - L2 LINE L2 -1 3312 3241 2339 90 3 3 chr3 120530358 120530658 -97506500 - AluSp SINE Alu -12 301 2 802 265 109 13 chr3 120531858 120532088 -97505070 - MIR SINE MIR -4 258 7 692 262 99 0 chr3 120532403 120532594 -97504564 + MER20B DNA MER1_type 1 210 -573 254 148 37 19 chr3 120533194 120533248 -97503910 + Tigger5 DNA MER2_type 1 55 -2268 1158 163 143 91 chr3 120534830 120535248 -97501910 - LTR7 LTR ERV1 -9 441 2 571 106 202 0 chr3 120535864 120535968 -97501190 + FLAM_C SINE Alu 14 138 -5 1139 250 66 14 chr3 120536234 120536582 -97500576 + L2 LINE L2 2317 2682 -632 3886 152 41 26 chr3 120536608 120537371 -97499787 + LTR1 LTR ERV1 12 785 0 773 239 160 36 chr3 120537375 120537660 -97499498 + L2 LINE L2 2680 2999 -314 218 273 36 0 chr3 120538240 120538295 -97498863 - MIR SINE MIR 0 262 206 26 30 0 0 chr3 120538468 120538501 -97498657 + AT_rich Low_complexity Low_complexity 1 33 0 1621 156 19 81 chr3 120538603 120538923 -97498235 - AluJo SINE Alu -10 302 3 2072 221 37 49 chr3 120539695 120540264 -97496894 - MER68 LTR ERV1 0 562 1 1735 171 0 11 chr3 120541314 120541638 -97495520 + AluSx SINE Alu 1 321 0 333 208 156 10 chr3 120542384 120542480 -97494678 - L2 LINE L2 -744 2570 2461 1101 184 104 33 chr3 120542817 120543182 -97493976 - MSTC LTR MaLR 0 428 1 253 302 142 9 chr3 120543247 120543479 -97493679 + L1MEd LINE L1 561 823 -5296 192 328 35 0 chr3 120543611 120543669 -97493489 - MIR SINE MIR -186 76 17 724 317 52 28 chr3 120544502 120544827 -97492331 + LTR16A LTR ERVL 109 441 -9 450 53 0 0 chr3 120544876 120544933 -97492225 + (TCCA)n Simple_repeat Simple_repeat 4 60 0 897 139 0 0 chr3 120544968 120545090 -97492068 - FLAM_C SINE Alu -20 123 2 752 265 86 21 chr3 120545582 120545816 -97491342 + MIR SINE MIR 10 258 -4 23 33 0 0 chr3 120545963 120545993 -97491165 + AT_rich Low_complexity Low_complexity 1 30 0 185 108 27 0 chr3 120546534 120546571 -97490587 + (TG)n Simple_repeat Simple_repeat 1 38 0 273 359 68 8 chr3 120547703 120547820 -97489338 + MIR3 SINE MIR 4 127 -81 232 200 0 43 chr3 120547835 120547905 -97489253 + L1ME LINE L1 5806 5872 -249 182 295 45 62 chr3 120547905 120548017 -97489141 - MIR SINE MIR -136 126 17 1443 142 0 49 chr3 120548026 120548273 -97488885 - AluSx SINE Alu -77 235 1 2331 156 92 17 chr3 120548881 120549350 -97487808 + MLT1D LTR MaLR 3 505 0 1745 181 3 3 chr3 120550363 120550651 -97486507 - AluJo SINE Alu -24 288 1 438 304 0 48 chr3 120551189 120551357 -97485801 - MIR SINE MIR -40 222 63 1658 172 58 0 chr3 120553408 120553733 -97483425 - MER2 DNA MER2_type 0 344 1 2023 136 0 32 chr3 120554605 120554915 -97482243 - AluJb SINE Alu -12 300 1 853 259 76 19 chr3 120555038 120555300 -97481858 - LTR16A LTR ERVL -118 332 56 420 312 0 0 chr3 120555342 120555480 -97481678 - L1MEc LINE L1 -4595 1801 1664 1911 248 115 50 chr3 120555507 120556405 -97480753 - L1MEc LINE L1 -5064 1141 186 21 57 0 0 chr3 120556439 120556474 -97480684 + AT_rich Low_complexity Low_complexity 1 35 0 278 282 14 0 chr3 120556730 120556801 -97480357 + MIR SINE MIR 76 147 -115 477 332 64 58 chr3 120557146 120558066 -97479092 - L2 LINE L2 -2 3270 1684 241 277 89 45 chr3 120558692 120558804 -97478354 + L2 LINE L2 3187 3303 -10 2264 99 0 0 chr3 120559030 120559324 -97477834 - AluSc SINE Alu -15 294 1 298 294 117 72 chr3 120559405 120559670 -97477488 + L2 LINE L2 1741 2017 -1297 1996 124 118 15 chr3 120559670 120560000 -97477158 - THE1B LTR MaLR 0 364 1 11915 88 2 1 chr3 120560000 120561578 -97475580 - THE1B-int LTR MaLR 0 1580 1 2175 122 76 15 chr3 120561578 120561921 -97475237 - THE1B LTR MaLR 0 364 1 384 310 24 59 chr3 120562941 120563196 -97473962 - L1M4 LINE L1 -802 5344 5099 408 224 47 37 chr3 120563219 120563326 -97473832 - MER81 DNA DNA -1 113 6 248 308 55 20 chr3 120563365 120563511 -97473647 - L1M4 LINE L1 -1089 5057 4907 181 362 106 11 chr3 120563565 120563659 -97473499 - MIR SINE MIR -102 160 58 336 277 50 21 chr3 120564175 120564316 -97472842 - L1ME3A LINE L1 -208 5962 5818 2525 237 55 36 chr3 120566162 120567437 -97469721 - L1ME1 LINE L1 -5 6161 4862 1773 277 34 36 chr3 120567466 120568048 -97469110 + L1M3e LINE L1 466 1046 -6443 * 2981 248 33 48 chr3 120568029 120569132 -97468026 + L1M3e LINE L1 1885 2970 -4595 1272 77 0 0 chr3 120569140 120569295 -97467863 + AluSg/x SINE Alu 144 298 -14 1658 237 6 6 chr3 120569299 120569662 -97467496 + L1M3e LINE L1 3796 4158 -3407 3372 184 74 17 chr3 120569671 120570451 -97466707 - MER21B LTR ERV1 -7 924 1 7325 174 36 41 chr3 120570453 120571992 -97465166 + L1M3e LINE L1 4156 5701 -1864 189 0 0 0 chr3 120571992 120572013 -97465145 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 3518 31 0 0 chr3 120572013 120572429 -97464729 - L1PA3 LINE L1 -7 6148 5733 7325 174 36 41 chr3 120572429 120572603 -97464555 + L1M3e LINE L1 5699 5862 -1703 1135 246 125 29 chr3 120572599 120573144 -97464014 - L1ME1 LINE L1 -1286 4860 4264 * 280 264 0 0 chr3 120573140 120573212 -97463946 + L1M4 LINE L1 3967 4038 -2108 * 1932 244 105 15 chr3 120573266 120574245 -97462913 - L1ME1 LINE L1 -2452 3694 2622 281 235 44 0 chr3 120574247 120574315 -97462843 - MLT1F1 LTR MaLR 0 567 497 1339 103 11 0 chr3 120574379 120574563 -97462595 - AluSg/x SINE Alu -2 307 122 846 221 21 25 chr3 120574636 120574871 -97462287 - L1MC/D LINE L1 -2287 5521 5288 315 298 24 0 chr3 120575220 120575304 -97461854 + MIR SINE MIR 69 154 -108 213 355 86 93 chr3 120575598 120576026 -97461132 + L2 LINE L2 2831 3255 -17 2065 133 0 40 chr3 120576092 120576439 -97460719 + MER1B DNA MER1_type 1 333 -4 5490 150 57 27 chr3 120577340 120578408 -97458750 - L1MC1 LINE L1 -6 6396 5294 848 141 109 0 chr3 120578558 120578714 -97458444 - MER2 DNA MER2_type -172 173 1 9834 241 28 48 chr3 120578717 120578753 -97458405 - L1MC1 LINE L1 -922 5293 5258 2414 40 3 17 chr3 120578753 120579050 -97458108 - AluY SINE Alu -10 301 9 9834 241 28 48 chr3 120579050 120583179 -97453979 - L1MC1 LINE L1 -957 5258 1246 13489 176 31 26 chr3 120583365 120586475 -97450683 - L1MA5A LINE L1 -6 6933 3840 8318 136 15 6 chr3 120586475 120587427 -97449731 + L1PA11 LINE L1 4013 4954 -1220 2736 103 0 5 chr3 120587427 120587804 -97449354 + THE1C LTR MaLR 1 375 0 8318 136 15 6 chr3 120587804 120589017 -97448141 + L1PA11 LINE L1 4954 6174 0 13489 176 31 26 chr3 120589017 120589969 -97447189 - L1MA5A LINE L1 -3099 3840 2860 2177 118 0 0 chr3 120589969 120590258 -97446900 - AluSq SINE Alu -24 289 1 13489 176 31 26 chr3 120590258 120590390 -97446768 - L1MA5A LINE L1 -4079 2860 2730 7419 190 40 131 chr3 120590402 120593096 -97444062 - L1MA5A LINE L1 -4328 2461 9 225 283 0 0 chr3 120593856 120593909 -97443249 + L2 LINE L2 2887 2939 -333 24 0 0 0 chr3 120594511 120594535 -97442623 + AT_rich Low_complexity Low_complexity 1 24 0 24 67 0 0 chr3 120595042 120595087 -97442071 + AT_rich Low_complexity Low_complexity 1 45 0 24 53 0 0 chr3 120595128 120595166 -97441992 + AT_rich Low_complexity Low_complexity 1 38 0 842 300 87 52 chr3 120596520 120597154 -97440004 - HAL1 LINE L1 -27 2480 1825 796 298 90 63 chr3 120597199 120598101 -97439057 - HAL1 LINE L1 -1564 943 18 304 338 81 7 chr3 120598226 120598362 -97438796 - L3 LINE CR1 -3 1574 1429 2854 179 12 12 chr3 120599028 120599587 -97437571 - L1MC1 LINE L1 -1 6332 5774 26 50 0 0 chr3 120600250 120600290 -97436868 + AT_rich Low_complexity Low_complexity 1 40 0 770 246 53 70 chr3 120601615 120601989 -97435169 - L1MC4a LINE L1 -1933 5875 5508 218 350 79 11 chr3 120603077 120603191 -97433967 + MER5A DNA MER1_type 17 154 -35 195 100 0 0 chr3 120603335 120603365 -97433793 + (TC)n Simple_repeat Simple_repeat 1 30 0 1656 229 19 91 chr3 120603449 120604090 -97433068 - L1ME1 LINE L1 -5 6161 5567 21 57 0 0 chr3 120604095 120604130 -97433028 + AT_rich Low_complexity Low_complexity 1 35 0 16778 75 13 5 chr3 120604163 120604181 -97432977 - L1PA7 LINE L1 -2 6152 6136 1106 8 0 0 chr3 120604181 120604308 -97432850 - L1PA2 LINE L1 0 6155 6029 16778 75 13 5 chr3 120604308 120607221 -97429937 - L1PA7 LINE L1 -18 6136 3193 2174 119 13 0 chr3 120607221 120607524 -97429634 - AluSc SINE Alu -2 307 1 16778 75 13 5 chr3 120607524 120607774 -97429384 - L1PA7 LINE L1 -2961 3193 2947 3282 99 2 15 chr3 120607768 120608243 -97428915 - L1PA7 LINE L1 -4096 2050 1582 * 874 206 106 0 chr3 120608245 120608425 -97428733 - MLT1B LTR MaLR -191 199 1 1926 165 3 32 chr3 120608596 120608972 -97428186 - L1 LINE L1 -1831 4315 3951 28329 32 1 0 chr3 120608992 120613203 -97423955 - L1PA4 LINE L1 -3 6152 1941 4355 218 28 9 chr3 120613202 120614304 -97422854 - L1 LINE L1 -2184 3962 2840 * 3184 178 57 9 chr3 120614304 120614554 -97422604 + L1 LINE L1 4306 4542 -1604 1451 197 23 75 chr3 120614554 120614939 -97422219 + MLT1A1 LTR MaLR 1 365 0 3184 178 57 9 chr3 120614939 120615350 -97421808 + L1 LINE L1 4542 4999 -1147 264 319 21 11 chr3 120616097 120616191 -97420967 + MIR SINE MIR 86 180 -82 21 0 0 0 chr3 120616811 120616832 -97420326 + AT_rich Low_complexity Low_complexity 1 21 0 465 314 152 57 chr3 120616858 120617451 -97419707 + HAL1 LINE L1 1 649 -1858 403 316 57 5 chr3 120617538 120617731 -97419427 + HAL1 LINE L1 1722 1924 -583 1302 188 6 117 chr3 120618174 120618498 -97418660 + AluJo SINE Alu 1 288 -14 27 29 0 0 chr3 120618543 120618577 -97418581 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr3 120618975 120619005 -97418153 + AT_rich Low_complexity Low_complexity 1 30 0 688 93 9 9 chr3 120619088 120619191 -97417967 - L1P5 LINE L1 -472 5679 5576 2842 113 2 22 chr3 120619191 120619634 -97417524 + L1PB1 LINE L1 5716 6150 -1 299 171 0 85 chr3 120619715 120619797 -97417361 - MER5A DNA MER1_type -102 87 13 9146 133 28 1 chr3 120619924 120621898 -97415260 + L1PA10 LINE L1 3799 5828 -340 197 186 70 0 chr3 120621898 120621941 -97415217 - MER5A DNA MER1_type -143 46 1 2301 108 0 15 chr3 120621990 120622323 -97414835 + L1P3 LINE L1 14 341 -5534 305 316 71 25 chr3 120622448 120622644 -97414514 - HAL1 LINE L1 -330 2177 1973 5642 110 13 26 chr3 120622664 120623539 -97413619 - L1PA11 LINE L1 -2 6172 5310 352 282 40 27 chr3 120623560 120623709 -97413449 - HAL1 LINE L1 -554 1953 1803 225 0 0 0 chr3 120623830 120623855 -97413303 + (TTTTA)n Simple_repeat Simple_repeat 5 29 0 661 289 117 81 chr3 120624066 120624858 -97412300 - HAL1 LINE L1 -1678 829 9 333 287 19 9 chr3 120625011 120625119 -97412039 - L3 LINE CR1 -40 1537 1429 2810 178 16 13 chr3 120625801 120626358 -97410800 - L1MC1 LINE L1 -1 6332 5774 1971 131 7 3 chr3 120627012 120627317 -97409841 - AluSx SINE Alu -5 307 2 23 54 0 0 chr3 120627326 120627363 -97409795 + AT_rich Low_complexity Low_complexity 1 37 0 276 130 0 0 chr3 120628581 120628627 -97408531 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 21 0 0 0 chr3 120628724 120628745 -97408413 + AT_rich Low_complexity Low_complexity 1 21 0 511 281 63 20 chr3 120628754 120629007 -97408151 - L1MC4a LINE L1 -1927 5881 5618 24 0 0 0 chr3 120629256 120629280 -97407878 + AT_rich Low_complexity Low_complexity 1 24 0 1121 128 23 0 chr3 120629281 120629453 -97407705 + L1 LINE L1 22 197 -7368 * 1160 156 5 10 chr3 120629443 120629642 -97407516 - L1 LINE L1 -1178 6387 6190 1963 155 14 57 chr3 120629647 120630086 -97407072 + L1 LINE L1 5752 6171 -1394 * 2731 134 7 5 chr3 120630082 120630492 -97406666 - L1 LINE L1 -6297 1268 858 1715 227 72 11 chr3 120630489 120631046 -97406112 - L1ME1 LINE L1 -296 5939 5323 * 4174 226 48 28 chr3 120631047 120631837 -97405321 - L1ME1 LINE L1 -944 5271 4445 2026 133 7 0 chr3 120631837 120632130 -97405028 - AluSx SINE Alu -15 297 3 4174 226 48 28 chr3 120632130 120632623 -97404535 - L1ME1 LINE L1 -1770 4445 3963 476 211 39 22 chr3 120632660 120632840 -97404318 - L1ME1 LINE L1 -5219 1177 995 436 269 8 0 chr3 120632847 120632977 -97404181 - L1ME1 LINE L1 -5453 943 813 736 199 34 6 chr3 120632982 120633158 -97404000 - L1MB4 LINE L1 -2 6178 5998 1360 171 36 43 chr3 120633212 120633493 -97403665 - L1MA9 LINE L1 -421 5891 5613 2450 127 21 7 chr3 120633494 120633920 -97403238 + L1MA9 LINE L1 5881 6312 0 239 358 0 0 chr3 120634049 120634116 -97403042 - L3 LINE CR1 -1 1576 1510 24 53 0 0 chr3 120634400 120634438 -97402720 + AT_rich Low_complexity Low_complexity 1 38 0 821 260 0 0 chr3 120634517 120634717 -97402441 + Charlie1 DNA MER1_type 46 245 -2516 282 217 14 14 chr3 120634720 120634789 -97402369 + Charlie1 DNA MER1_type 2693 2761 0 1561 233 69 27 chr3 120634830 120635354 -97401804 + L1PBa LINE L1 6 551 -6312 2153 131 0 3 chr3 120635378 120635721 -97401437 + L1PB1 LINE L1 5810 6151 0 21 0 0 0 chr3 120635818 120635839 -97401319 + AT_rich Low_complexity Low_complexity 1 21 0 302 190 0 0 chr3 120636111 120636170 -97400988 + MLT1B LTR MaLR 307 390 0 488 227 168 31 chr3 120636487 120636641 -97400517 - HAL1b LINE L1 -7 1341 1210 1596 61 0 15 chr3 120636641 120636838 -97400320 + AluY SINE Alu 110 303 -8 488 227 168 31 chr3 120636838 120636974 -97400184 - HAL1b LINE L1 -138 1210 1011 1283 172 0 0 chr3 120636974 120637195 -97399963 + L1MC1 LINE L1 6104 6324 -9 2219 161 44 30 chr3 120637198 120637626 -97399532 + Tigger2a DNA MER2_type 1 434 0 752 249 30 43 chr3 120637795 120638096 -97399062 - HAL1b LINE L1 -342 1006 710 14698 237 33 18 chr3 120638482 120638844 -97398314 + L1PA15 LINE L1 1 356 -6460 2821 118 80 4 chr3 120638844 120639319 -97397839 - MER9 LTR ERVK 0 511 1 14698 237 33 18 chr3 120639319 120642167 -97394991 + L1PA15 LINE L1 356 3161 -3655 2141 137 3 0 chr3 120642167 120642473 -97394685 + AluSx SINE Alu 1 307 -5 14698 237 33 18 chr3 120642473 120644512 -97392646 + L1PA15 LINE L1 3161 5834 -982 291 28 0 0 chr3 120644512 120644548 -97392610 + (CA)n Simple_repeat Simple_repeat 1 36 0 14698 237 33 18 chr3 120644548 120645546 -97391612 + L1PA15 LINE L1 5834 6816 0 389 286 24 36 chr3 120646212 120646380 -97390778 + L1MB5 LINE L1 14 179 -6363 7221 43 4 4 chr3 120646393 120647292 -97389866 - L1PA7 LINE L1 -2 6152 5254 5581 92 4 15 chr3 120647305 120648120 -97389038 + L1PA7 LINE L1 4434 5239 -907 5479 246 71 26 chr3 120648162 120648560 -97388598 + L1MB5 LINE L1 1205 1584 -5060 2255 103 10 16 chr3 120648560 120648871 -97388287 + AluSg SINE Alu 1 309 -1 5479 246 71 26 chr3 120648871 120650158 -97387000 + L1MB5 LINE L1 1584 2812 -3832 1944 134 40 3 chr3 120650158 120650456 -97386702 - AluSx SINE Alu -3 309 1 5479 246 71 26 chr3 120650456 120652407 -97384751 + L1MB5 LINE L1 2812 5203 -1441 1008 207 60 4 chr3 120652430 120652662 -97384496 + L1MA3 LINE L1 1 245 -6964 4305 220 47 63 chr3 120652684 120653836 -97383322 + L1MA3 LINE L1 1039 2171 -5038 1184 171 13 1 chr3 120653836 120654212 -97382946 + MSTB LTR MaLR 10 425 -1 12940 187 75 11 chr3 120654213 120655190 -97381968 + L1MA3 LINE L1 2161 3075 -4292 2833 10 0 0 chr3 120655190 120655497 -97381661 + AluYa5 SINE Alu 1 307 -4 12940 187 75 11 chr3 120655497 120659409 -97377749 + L1MA3 LINE L1 3075 7365 -2 10895 169 23 21 chr3 120659477 120661946 -97375212 + L1MA4A LINE L1 3029 5503 -800 2339 107 0 0 chr3 120661946 120662244 -97374914 - AluSx SINE Alu -14 298 1 10895 169 23 21 chr3 120662244 120663046 -97374112 + L1MA4A LINE L1 5503 6302 -1 3773 191 53 48 chr3 120663035 120663506 -97373652 + L1MB5 LINE L1 5188 5655 -1017 * 2483 154 12 21 chr3 120663506 120663935 -97373223 - MSTB LTR MaLR -1 425 1 3773 191 53 48 chr3 120663935 120664282 -97372876 + L1MB5 LINE L1 5655 5999 -673 2360 86 3 0 chr3 120664282 120664574 -97372584 - AluSp SINE Alu -16 297 5 3773 191 53 48 chr3 120664574 120665214 -97371944 + L1MB5 LINE L1 5999 6636 -36 943 198 0 12 chr3 120665304 120665466 -97371692 - FRAM SINE Alu -24 152 1 1061 165 0 0 chr3 120665538 120665720 -97371438 - L1MD1 LINE L1 0 6242 6061 2280 174 30 94 chr3 120665720 120666346 -97370812 + LTR60 LTR ERV1 1 586 0 1255 223 6 28 chr3 120666568 120666852 -97370306 - L1M4 LINE L1 -1923 4223 3945 948 237 126 38 chr3 120666852 120667194 -97369964 + MLT1A2 LTR MaLR 1 372 -2 1255 223 6 28 chr3 120667194 120667228 -97369930 - L1M4 LINE L1 -2201 3945 3912 816 182 0 21 chr3 120667799 120667942 -97369216 - MLT1C LTR MaLR 0 467 328 607 176 29 37 chr3 120667960 120668096 -97369062 + MER74C LTR ERVL 1 135 -325 5019 196 52 11 chr3 120668098 120669146 -97368012 + HERVL74 LTR ERVL 3215 4304 -1381 10161 183 17 11 chr3 120669146 120671132 -97366026 - L1PA13 LINE L1 -2 6812 4816 2416 60 0 17 chr3 120671132 120671431 -97365727 - AluY SINE Alu -17 294 1 10161 183 17 11 chr3 120671431 120672319 -97364839 - L1PA13 LINE L1 -1998 4816 3934 12233 215 23 14 chr3 120672321 120676100 -97361058 - L1PA13 LINE L1 -2974 3823 1 3248 250 55 47 chr3 120676113 120677410 -97359748 + HERVL74 LTR ERVL 4293 5685 0 2288 178 43 23 chr3 120677421 120677864 -97359294 + MER74C LTR ERVL 9 460 0 703 157 88 31 chr3 120677866 120678025 -97359133 - MLT1C LTR MaLR -141 326 159 967 139 6 30 chr3 120678067 120678232 -97358926 - MLT1C LTR MaLR -299 168 8 656 232 73 36 chr3 120678247 120678467 -97358691 + L1ME3 LINE L1 5591 5818 -344 597 264 11 88 chr3 120678483 120678744 -97358414 + L1ME3 LINE L1 5914 6154 -8 4620 259 20 38 chr3 120679372 120679845 -97357313 - L1PA12 LINE L1 -2619 4965 4485 223 37 0 0 chr3 120679845 120679872 -97357286 + (TTTA)n Simple_repeat Simple_repeat 2 140 0 2102 99 11 0 chr3 120679872 120680154 -97357004 - AluSq SINE Alu -28 285 1 4620 259 20 38 chr3 120680154 120681691 -97355467 - L1PA12 LINE L1 -3097 4487 2966 3648 86 47 32 chr3 120681777 120682566 -97354592 - MER11A LTR ERVK -372 864 1 246 329 0 0 chr3 120682865 120682941 -97354217 - L1PA12 LINE L1 -5400 2181 2106 * 321 346 8 8 chr3 120682921 120683051 -97354107 - L1PA12 LINE L1 -5276 2298 2169 286 366 48 24 chr3 120683100 120683351 -97353807 - L1PA12 LINE L1 -6201 1373 1117 2117 109 174 11 chr3 120683362 120683730 -97353428 - MSTA LTR MaLR 0 428 1 36 53 0 0 chr3 120683881 120683938 -97353220 + AT_rich Low_complexity Low_complexity 1 57 0 1855 276 42 28 chr3 120684139 120684187 -97352971 - ERVL-C1 LTR ERVL -4443 1042 996 2623 157 24 5 chr3 120684187 120684607 -97352551 + MSTA LTR MaLR 1 428 0 1855 276 42 28 chr3 120684607 120685286 -97351872 - ERVL-C1 LTR ERVL -4489 996 360 744 291 71 28 chr3 120685323 120685646 -97351512 - ERVL-C1 LTR ERVL -5314 340 4 1846 195 14 58 chr3 120685648 120685713 -97351445 - MLT2C1 LTR ERVL 0 397 331 267 103 0 0 chr3 120685713 120685752 -97351406 + (TG)n Simple_repeat Simple_repeat 2 40 0 1846 195 14 58 chr3 120685752 120686101 -97351057 - MLT2C1 LTR ERVL -66 331 1 414 227 0 0 chr3 120686103 120686191 -97350967 + L1 LINE L1 2676 2763 -3383 336 260 32 41 chr3 120686324 120686447 -97350711 - L1MEd LINE L1 -5992 127 6 312 272 53 12 chr3 120687587 120687756 -97349402 + L1 LINE L1 3310 3485 -2661 404 347 81 25 chr3 120687860 120688217 -97348941 + L1 LINE L1 3595 3971 -2175 231 105 26 0 chr3 120688403 120688441 -97348717 + MER52A LTR ERV1 1 39 -1716 6817 182 36 34 chr3 120688849 120690232 -97346926 + MER52A LTR ERV1 314 1755 0 378 302 22 20 chr3 120690303 120690467 -97346691 - HERV16 LTR ERVL -548 4948 4777 705 111 0 0 chr3 120690468 120690567 -97346591 + AluSg/x SINE Alu 208 306 -6 365 248 0 9 chr3 120690759 120690864 -97346294 - HERV16 LTR ERVL -1713 3941 3838 2677 315 79 19 chr3 120690901 120692708 -97344450 - HERV16 LTR ERVL -1970 3794 1841 1579 221 43 54 chr3 120692711 120692916 -97344242 + Charlie1a DNA MER1_type 1 207 -2554 1861 241 102 2 chr3 120692916 120693339 -97343819 - MLT1C LTR MaLR 0 467 3 1579 221 43 54 chr3 120693339 120693594 -97343564 + Charlie1a DNA MER1_type 207 456 -999 180 0 0 0 chr3 120694280 120694300 -97342858 + (A)n Simple_repeat Simple_repeat 1 20 0 250 305 0 0 chr3 120694454 120694513 -97342645 - Charlie1a DNA MER1_type -1396 59 1 216 250 0 0 chr3 120695642 120695686 -97341472 + L2 LINE L2 2896 2939 -333 450 291 29 86 chr3 120698348 120698558 -97338600 + MIR SINE MIR 63 260 -2 22 35 0 0 chr3 120698637 120698666 -97338492 + AT_rich Low_complexity Low_complexity 1 29 0 654 159 133 26 chr3 120698697 120698848 -97338310 - L1MB8 LINE L1 0 6178 6012 70 48 0 0 chr3 120699336 120699441 -97337717 + AT_rich Low_complexity Low_complexity 1 105 0 2436 60 0 22 chr3 120699526 120699844 -97337314 - AluY SINE Alu 0 311 1 347 320 85 88 chr3 120700065 120700833 -97336325 + L2 LINE L2 1992 2756 -558 19460 72 14 1 chr3 120701091 120703537 -97333621 - HERVL LTR ERVL -510 5144 2667 10233 75 4 3 chr3 120705832 120707120 -97330038 - HERVL LTR ERVL -2970 2684 1396 5995 196 168 5 chr3 120707120 120708628 -97328530 - L1PBa LINE L1 -5105 1758 6 6436 164 18 10 chr3 120708648 120710529 -97326629 + L1PA13 LINE L1 4253 6153 -10 186 43 0 0 chr3 120710529 120710552 -97326606 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6436 164 18 10 chr3 120710552 120710564 -97326594 + L1PA13 LINE L1 6153 6163 0 223 239 57 19 chr3 120710666 120710756 -97326402 + MIR SINE MIR 92 147 -61 261 256 146 12 chr3 120712548 120712630 -97324528 - L2 LINE L2 -1 3271 3179 416 320 153 0 chr3 120712685 120712907 -97324251 - MIR SINE MIR -4 258 3 742 278 21 34 chr3 120714267 120714501 -97322657 - MIR SINE MIR -1 261 31 254 370 24 16 chr3 120715363 120715490 -97321668 - MIR3 SINE MIR -23 185 58 217 227 0 0 chr3 120715999 120716043 -97321115 + (TATG)n Simple_repeat Simple_repeat 4 47 0 1851 116 14 22 chr3 120718049 120718060 -97319098 - AluSq SINE Alu -38 275 265 1929 119 7 4 chr3 120718060 120718337 -97318821 - AluSx SINE Alu -2 310 33 1851 116 14 22 chr3 120718337 120718602 -97318556 - AluSq SINE Alu -48 265 1 500 167 12 130 chr3 120719650 120719812 -97317346 + L1 LINE L1 2758 2900 -3246 * 1444 284 38 0 chr3 120719809 120720259 -97316899 + L1ME1 LINE L1 3418 3884 -2262 2993 200 58 79 chr3 120720262 120720725 -97316433 + L1ME1 LINE L1 4915 5386 -780 2461 67 0 6 chr3 120720725 120721037 -97316121 + AluY SINE Alu 1 310 -1 2993 200 58 79 chr3 120721037 120721678 -97315480 + L1ME1 LINE L1 5386 6007 -159 2179 159 22 8 chr3 120721678 120722036 -97315122 + MLT1A1 LTR MaLR 3 365 0 2993 200 58 79 chr3 120722036 120722187 -97314971 + L1ME1 LINE L1 6007 6160 -6 410 298 122 11 chr3 120722321 120722502 -97314656 - MIR SINE MIR -11 251 51 2714 159 2 5 chr3 120723257 120723697 -97313461 + L1PB4 LINE L1 5717 6155 -1 926 270 10 36 chr3 120724502 120724809 -97312349 + L2 LINE L2 2606 2904 -410 703 243 103 5 chr3 120724828 120725013 -97312145 + MIR SINE MIR 34 236 -26 376 293 9 0 chr3 120725020 120725126 -97312032 + L2 LINE L2 2855 2961 -311 23 33 0 0 chr3 120725394 120725424 -97311734 + AT_rich Low_complexity Low_complexity 1 30 0 425 258 101 17 chr3 120727500 120727678 -97309480 + MIR SINE MIR 69 261 -1 481 323 143 60 chr3 120728829 120729430 -97307728 + L2 LINE L2 2608 3255 -17 540 330 47 8 chr3 120729441 120729677 -97307481 + MIR SINE MIR 1 245 -17 752 130 8 2 chr3 120729745 120729986 -97307172 + AluSx SINE Alu 1 298 -11 1412 81 52 19 chr3 120730188 120730398 -97306760 - AluSc SINE Alu -5 304 88 516 235 337 4 chr3 120730434 120730677 -97306481 + MER5C DNA MER1_type 1 324 0 201 348 177 14 chr3 120730677 120730818 -97306340 - MIR3 SINE MIR -26 182 19 2399 63 0 16 chr3 120731636 120731939 -97305219 + AluY SINE Alu 1 298 -13 348 279 77 27 chr3 120733409 120733599 -97303559 - MLT1L LTR MaLR -375 213 20 2685 39 0 0 chr3 120734314 120734625 -97302533 + AluY SINE Alu 1 311 0 839 218 83 0 chr3 120735760 120735953 -97301205 - MER3 DNA MER1_type 0 209 1 2913 126 97 17 chr3 120735982 120736499 -97300659 - LTR64 LTR ERVK 0 558 1 2108 131 3 0 chr3 120736616 120736922 -97300236 - AluSx SINE Alu -5 307 1 188 51 0 77 chr3 120736939 120736978 -97300180 + (A)n Simple_repeat Simple_repeat 1 36 0 186 281 70 0 chr3 120737070 120737127 -97300031 + MIR SINE MIR 103 163 -99 381 266 0 32 chr3 120737148 120737242 -97299916 + L2 LINE L2 3172 3262 -10 406 246 181 0 chr3 120738934 120739072 -97298086 + MIR3 SINE MIR 28 190 -18 2437 82 0 3 chr3 120739478 120739783 -97297375 - AluY SINE Alu -7 304 1 280 331 83 40 chr3 120740119 120740421 -97296737 - L2 LINE L2 -1 3312 2998 2264 121 0 0 chr3 120742447 120742754 -97294404 + AluSx SINE Alu 1 307 -5 300 247 67 11 chr3 120743879 120743968 -97293190 - L1MC4 LINE L1 -1337 6705 6612 241 216 0 57 chr3 120743974 120744062 -97293096 + (TA)n Simple_repeat Simple_repeat 1 83 0 341 329 13 26 chr3 120744436 120744591 -97292567 - MIR SINE MIR -41 221 69 291 289 70 16 chr3 120744629 120744757 -97292401 + MIR SINE MIR 78 212 -50 425 249 174 2 chr3 120744932 120745158 -97292000 - MER5C DNA MER1_type 0 324 1 5075 65 38 1 chr3 120746164 120746831 -97290327 + LTR8 LTR ERV1 1 691 0 2220 87 0 0 chr3 120747579 120747867 -97289291 - AluSc SINE Alu -13 296 9 739 205 101 95 chr3 120748410 120748746 -97288412 + MER46C DNA MER2_type 1 338 0 368 332 158 0 chr3 120748764 120748954 -97288204 + MIR SINE MIR 43 262 0 2002 153 0 3 chr3 120749425 120749738 -97287420 - AluSx SINE Alu 0 312 1 795 205 30 3 chr3 120749973 120750221 -97286937 - LTR37A LTR ERV1 0 426 212 2104 114 0 0 chr3 120750221 120750494 -97286664 + AluSx SINE Alu 1 273 -39 260 247 25 0 chr3 120750532 120750613 -97286545 - LTR37A LTR ERV1 -249 177 95 238 196 0 0 chr3 120750622 120750668 -97286490 + MER34 LTR ERV1 10 55 -487 246 122 20 0 chr3 120750669 120750718 -97286440 + MER39 LTR ERV1 599 648 -59 257 325 0 0 chr3 120750758 120750835 -97286323 + MIR SINE MIR 80 156 -106 1894 188 48 70 chr3 120750975 120751457 -97285701 + MLT1D LTR MaLR 1 471 -34 281 208 10 99 chr3 120751457 120751558 -97285600 + MER39B LTR ERV1 1 92 -561 * 2489 123 8 70 chr3 120751539 120751854 -97285304 + MER39 LTR ERV1 265 543 -164 2203 144 0 3 chr3 120751854 120752167 -97284991 - AluSx SINE Alu 0 312 1 2489 123 8 70 chr3 120752167 120752323 -97284835 + MER39 LTR ERV1 543 707 0 42521 34 2 2 chr3 120752910 120759061 -97278097 - L1PA3 LINE L1 -3 6152 2 584 176 0 0 chr3 120759190 120759292 -97277866 + Tigger2 DNA MER2_type 1 102 -2616 828 163 0 7 chr3 120759300 120759447 -97277711 - MER39 LTR ERV1 -25 682 537 * 2037 154 20 16 chr3 120759443 120760040 -97277118 + Tigger2 DNA MER2_type 101 744 -1974 1494 136 20 0 chr3 120760105 120760356 -97276802 + Tigger2 DNA MER2_type 2451 2706 -12 195 204 0 0 chr3 120760614 120760663 -97276495 + (CATG)n Simple_repeat Simple_repeat 2 50 0 2445 70 3 0 chr3 120761670 120761969 -97275189 - AluY SINE Alu -11 300 1 1520 118 0 0 chr3 120763262 120763466 -97273692 + AluY SINE Alu 1 204 -107 5179 89 0 4 chr3 120763533 120764227 -97272931 - LTR8 LTR ERV1 0 691 1 494 290 14 7 chr3 120764285 120764423 -97272735 + MER5B DNA MER1_type 38 176 -2 23 0 0 0 chr3 120764601 120764624 -97272534 + AT_rich Low_complexity Low_complexity 1 23 0 1521 179 140 11 chr3 120765524 120765875 -97271283 - MSTD LTR MaLR 0 396 1 515 316 37 28 chr3 120766177 120766392 -97270766 + MIR SINE MIR 2 218 -44 277 323 65 13 chr3 120766728 120766883 -97270275 - L2 LINE L2 -117 3196 3034 1758 141 62 43 chr3 120768870 120769238 -97267920 + THE1C LTR MaLR 1 375 0 2361 92 11 6 chr3 120769979 120770326 -97266832 + THE1A LTR MaLR 1 349 -6 976 245 117 40 chr3 120770410 120770813 -97266345 - MLT1J2 LTR MaLR -21 426 4 26 64 0 0 chr3 120770874 120770921 -97266237 + AT_rich Low_complexity Low_complexity 1 47 0 2047 97 51 10 chr3 120771066 120771377 -97265781 - THE1B LTR MaLR 0 364 41 562 93 0 0 chr3 120771434 120771509 -97265649 - THE1B LTR MaLR -289 75 1 599 284 164 26 chr3 120771540 120771931 -97265227 + MLT1H LTR MaLR 1 445 -104 819 285 42 49 chr3 120772067 120772474 -97264684 + MLT1J LTR MaLR 108 511 0 2546 141 16 25 chr3 120773149 120773583 -97263575 - Tigger2a DNA MER2_type -1 433 4 277 289 24 0 chr3 120774201 120774284 -97262874 - MIR3 SINE MIR -23 185 101 342 221 81 0 chr3 120774435 120774521 -97262637 - MLT1L LTR MaLR -357 258 166 270 95 0 0 chr3 120776710 120776752 -97260406 + (T)n Simple_repeat Simple_repeat 1 42 0 388 317 28 28 chr3 120777452 120777597 -97259561 + L2 LINE L2 3165 3309 -4 549 301 78 16 chr3 120777734 120778149 -97259009 + L1MC/D LINE L1 5275 5742 -442 604 279 99 44 chr3 120778201 120778473 -97258685 + L2 LINE L2 3025 3311 -2 328 169 0 0 chr3 120780366 120780425 -97256733 - LTR67 LTR ERVL -46 511 453 1846 208 62 52 chr3 120780778 120781177 -97255981 - MLT1F LTR MaLR 0 542 135 1904 159 0 17 chr3 120781177 120781501 -97255657 + AluJb SINE Alu 3 312 0 1846 208 62 52 chr3 120781501 120781615 -97255543 - MLT1F LTR MaLR -407 135 24 1649 155 75 33 chr3 120782249 120782584 -97254574 - MLT1A1 LTR MaLR 0 365 17 229 325 12 0 chr3 120782909 120782992 -97254166 - MER63 DNA MER1_type 0 1061 978 254 236 194 0 chr3 120782992 120783064 -97254094 - MER63 DNA MER1_type -310 752 41 1047 75 6 12 chr3 120783597 120783758 -97253400 + (GAA)n Simple_repeat Simple_repeat 2 161 0 374 280 19 28 chr3 120785411 120785518 -97251640 + MIR3 SINE MIR 99 204 -4 381 336 72 34 chr3 120785847 120786270 -97250888 + L1MC4a LINE L1 5332 5782 -2026 1539 119 5 9 chr3 120786270 120786489 -97250669 + AluSg/x SINE Alu 83 300 -10 381 336 72 34 chr3 120786489 120786618 -97250540 + L1MC4a LINE L1 5782 5905 -1903 444 114 0 13 chr3 120787552 120787631 -97249527 + L1MA1 LINE L1 6219 6296 -6 430 341 66 13 chr3 120787826 120788052 -97249106 - MIR SINE MIR -5 257 20 386 262 119 8 chr3 120788707 120788833 -97248325 - MIR SINE MIR -14 248 109 225 143 41 0 chr3 120790447 120790496 -97246662 + GA-rich Low_complexity Low_complexity 2 52 0 22 35 0 0 chr3 120791873 120791902 -97245256 + AT_rich Low_complexity Low_complexity 1 29 0 3382 205 22 6 chr3 120792228 120793083 -97244075 + L1 LINE L1 3139 4007 -2139 40454 36 23 1 chr3 120793089 120799106 -97238052 + L1PA3 LINE L1 3 6155 0 241 309 15 0 chr3 120799173 120799241 -97237917 - L2 LINE L2 -8 3305 3237 339 167 0 30 chr3 120799324 120799390 -97237768 + MER21B LTR ERV1 8 71 -792 5527 207 30 5 chr3 120799393 120801590 -97235568 + L1PA16 LINE L1 3991 6195 0 2360 98 0 0 chr3 120801653 120801950 -97235208 + AluSx SINE Alu 5 301 -11 389 289 58 32 chr3 120802665 120802821 -97234337 - L2 LINE L2 0 3313 3154 190 312 59 89 chr3 120803302 120803539 -97233619 - L2 LINE L2 -359 2955 2726 298 302 47 0 chr3 120805068 120805174 -97231984 - L3 LINE CR1 -112 1465 1355 22 80 0 0 chr3 120805635 120805685 -97231473 + AT_rich Low_complexity Low_complexity 1 50 0 1879 128 31 31 chr3 120805687 120805976 -97231182 + AluSq SINE Alu 2 290 -23 300 260 0 62 chr3 120805997 120806093 -97231065 - L1MC4 LINE L1 -1339 6703 6614 * 312 145 26 40 chr3 120806036 120806112 -97231046 + L1MCa LINE L1 1994 2068 -4358 449 235 26 9 chr3 120807024 120807139 -97230019 - MER94 DNA DNA 0 134 18 1891 240 16 5 chr3 120807281 120807718 -97229440 - MLT1F LTR MaLR -2 540 99 349 250 12 0 chr3 120807860 120808032 -97229126 + (TA)n Simple_repeat Simple_repeat 1 174 0 494 352 106 52 chr3 120808255 120808882 -97228276 - L2 LINE L2 0 3272 2617 676 193 0 0 chr3 120809015 120809124 -97228034 - FRAM SINE Alu -58 118 10 862 161 12 6 chr3 120809263 120809425 -97227733 + L1MB3 LINE L1 5939 6101 -82 2090 110 10 13 chr3 120809425 120809724 -97227434 + AluSx SINE Alu 1 298 -14 591 249 149 5 chr3 120810310 120810375 -97226783 + L2 LINE L2 2139 2193 -1121 1451 99 45 9 chr3 120810375 120810597 -97226561 + MER30 DNA MER1_type 1 230 0 591 249 149 5 chr3 120810597 120810752 -97226406 + L2 LINE L2 2193 2391 -923 405 359 13 26 chr3 120810752 120810983 -97226175 + L2 LINE L2 2519 2746 -568 409 288 145 76 chr3 120810986 120811379 -97225779 + L2 LINE L2 2892 3311 -2 206 273 0 61 chr3 120811795 120811861 -97225297 + L2 LINE L2 3134 3195 -77 271 163 0 0 chr3 120812611 120812660 -97224498 + MER41E LTR ERV1 1 49 -463 2346 79 3 10 chr3 120812668 120812973 -97224185 + AluY SINE Alu 1 303 -8 656 308 20 50 chr3 120813062 120813517 -97223641 + MER84-int LTR ERV1 2022 2718 -3958 289 191 139 25 chr3 120813575 120813707 -97223451 + MER84-int LTR ERV1 2039 2171 -2783 571 174 20 0 chr3 120813827 120813925 -97223233 + MER41E LTR ERV1 413 512 0 705 289 34 0 chr3 120815586 120815794 -97221364 + MIR SINE MIR 47 261 -1 201 39 0 0 chr3 120816522 120816548 -97220610 + (CA)n Simple_repeat Simple_repeat 2 27 0 231 167 0 0 chr3 120817284 120817326 -97219832 + GA-rich Low_complexity Low_complexity 2 43 0 298 281 0 50 chr3 120819983 120820104 -97217054 + GA-rich Low_complexity Low_complexity 3 117 0 285 355 28 21 chr3 120825160 120825301 -97211857 - MIR3 SINE MIR -64 144 3 216 0 0 0 chr3 120826348 120826372 -97210786 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 216 325 246 0 chr3 120827625 120827751 -97209407 - MIR SINE MIR -6 256 100 24 53 0 0 chr3 120829053 120829091 -97208067 + AT_rich Low_complexity Low_complexity 1 38 0 810 107 0 0 chr3 120829241 120829362 -97207796 - L1MB1 LINE L1 0 6168 6048 362 266 241 2 chr3 120829587 120829716 -97207442 + MIR SINE MIR 21 173 -81 1943 167 0 0 chr3 120831403 120831720 -97205438 + AluSx SINE Alu 2 318 0 1347 275 111 28 chr3 120832400 120833167 -97203991 - L1MC4a LINE L1 -1671 6137 5307 270 354 20 0 chr3 120833238 120833337 -97203821 - MER5B DNA MER1_type -68 110 10 323 379 39 20 chr3 120834192 120834345 -97202813 - L2 LINE L2 -10 3262 3107 466 328 56 6 chr3 120834582 120834762 -97202396 - MER5A DNA MER1_type 0 189 1 1975 124 0 65 chr3 120835272 120835579 -97201579 + AluSx SINE Alu 1 287 -25 28 29 0 0 chr3 120835579 120835614 -97201544 + AT_rich Low_complexity Low_complexity 1 35 0 455 226 9 43 chr3 120836117 120836232 -97200926 + MIR3 SINE MIR 10 120 -88 396 300 229 19 chr3 120836232 120836499 -97200659 - LTR16A LTR ERVL 0 450 128 735 229 100 98 chr3 120836647 120837194 -97199964 - MLT1H LTR MaLR 0 624 1 208 255 102 61 chr3 120837285 120837383 -97199775 + L2 LINE L2 3211 3312 -1 36 40 0 0 chr3 120837745 120837795 -97199363 + AT_rich Low_complexity Low_complexity 1 50 0 2353 62 0 26 chr3 120839703 120840010 -97197148 - AluY SINE Alu -12 299 1 572 298 111 13 chr3 120840115 120840340 -97196818 - MIR SINE MIR -14 248 2 406 147 27 13 chr3 120840635 120840710 -97196448 + MIR3 SINE MIR 124 199 -9 243 170 0 0 chr3 120841777 120841824 -97195334 + T-rich Low_complexity Low_complexity 1 47 0 4207 88 0 0 chr3 120842158 120842712 -97194446 - MER41A LTR ERV1 0 554 1 521 326 39 13 chr3 120843234 120843464 -97193694 - MIR SINE MIR -19 243 8 191 295 13 39 chr3 120843536 120843614 -97193544 - L3 LINE CR1 -2 1575 1500 180 213 0 0 chr3 120844335 120844396 -97192762 + (TA)n Simple_repeat Simple_repeat 1 61 0 751 285 66 12 chr3 120845007 120845249 -97191909 + MIR SINE MIR 6 260 -2 22 0 0 0 chr3 120845362 120845384 -97191774 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr3 120846185 120846206 -97190952 + (A)n Simple_repeat Simple_repeat 1 21 0 317 256 108 27 chr3 120846603 120846744 -97190414 + MIR SINE MIR 6 153 -62 2437 81 0 3 chr3 120847034 120847344 -97189814 + AluSc SINE Alu 1 309 0 1836 103 17 45 chr3 120850465 120850756 -97186402 - AluSx SINE Alu -29 283 1 227 191 0 24 chr3 120851175 120851217 -97185941 - L2 LINE L2 -8 3264 3224 281 284 313 11 chr3 120851466 120851642 -97185516 + L3 LINE CR1 147 375 -1202 801 273 189 26 chr3 120851866 120852247 -97184911 + L3 LINE CR1 404 846 -731 360 288 9 137 chr3 120852451 120852684 -97184474 - MIR3 SINE MIR -1 207 5 224 266 62 0 chr3 120852822 120852886 -97184272 + MIR SINE MIR 86 153 -109 2271 128 34 0 chr3 120854684 120855036 -97182122 - THE1B LTR MaLR 0 364 1 2922 13 0 0 chr3 120855074 120855392 -97181766 - AluYb8 SINE Alu 0 318 1 198 272 55 137 chr3 120855392 120855469 -97181689 + MIR3 SINE MIR 63 124 -84 198 0 0 0 chr3 120855469 120855491 -97181667 + (TAA)n Simple_repeat Simple_repeat 2 23 0 198 272 55 137 chr3 120855491 120855550 -97181608 + MIR3 SINE MIR 124 186 -22 29 60 0 0 chr3 120857785 120857835 -97179323 + AT_rich Low_complexity Low_complexity 1 50 0 2228 120 0 0 chr3 120858909 120859210 -97177948 - AluSx SINE Alu -11 301 1 1991 106 7 4 chr3 120859300 120859575 -97177583 - AluSc SINE Alu -33 276 1 1728 144 36 44 chr3 120859575 120859937 -97177221 - L1MB2 LINE L1 -41 6130 5772 52 41 0 0 chr3 120860204 120860277 -97176881 + AT_rich Low_complexity Low_complexity 1 73 0 215 289 77 19 chr3 120862376 120862480 -97174678 + L2 LINE L2 3185 3294 -19 390 317 111 62 chr3 120862689 120863014 -97174144 + L2 LINE L2 2932 3272 0 290 281 219 24 chr3 120864711 120864875 -97172283 - MIR3 SINE MIR -3 205 10 188 275 0 0 chr3 120867037 120867077 -97170081 - MIR SINE MIR -102 106 67 21 36 0 0 chr3 120867275 120867303 -97169855 + AT_rich Low_complexity Low_complexity 1 28 0 2722 153 52 20 chr3 120867796 120868177 -97168981 + L1PB4 LINE L1 5596 6000 -156 2111 109 37 40 chr3 120868177 120868553 -97168605 - THE1C LTR MaLR 0 375 1 2722 153 52 20 chr3 120868553 120868712 -97168446 + L1PB4 LINE L1 6000 6153 -3 498 298 103 58 chr3 120868847 120869139 -97168019 + L3 LINE CR1 1262 1566 -11 349 367 73 18 chr3 120870145 120870472 -97166686 - L1M4 LINE L1 -2546 3600 3256 2915 149 11 25 chr3 120870518 120871075 -97166083 - L1MB3 LINE L1 -3 6882 6334 1274 149 24 44 chr3 120871077 120871325 -97165833 + L1M3 LINE L1 5328 5570 -613 357 24 0 0 chr3 120871342 120871384 -97165774 + (CA)n Simple_repeat Simple_repeat 2 43 0 6292 191 39 46 chr3 120871384 120872638 -97164520 - L1MB3 LINE L1 -541 6344 5101 1913 152 34 0 chr3 120872638 120872935 -97164223 - AluSx SINE Alu -5 307 1 6292 191 39 46 chr3 120872935 120873612 -97163546 - L1MB3 LINE L1 -1784 5101 4421 5301 254 59 11 chr3 120873959 120875856 -97161302 - L1MB3 LINE L1 -2404 4444 2419 216 0 0 0 chr3 120875856 120875880 -97161278 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5301 254 59 11 chr3 120875880 120876411 -97160747 - L1MB3 LINE L1 -4429 2419 1915 2581 196 2 53 chr3 120876415 120876966 -97160192 - L1MB3 LINE L1 -5857 993 471 22 56 0 0 chr3 120877037 120877073 -97160085 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr3 120877129 120877158 -97160000 + AT_rich Low_complexity Low_complexity 1 29 0 2046 245 82 19 chr3 120878049 120878723 -97158435 + HsTC2a DNA Tc2 4 719 -25 318 115 0 0 chr3 120878977 120879038 -97158120 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 31 68 0 0 chr3 120879775 120879834 -97157324 + AT_rich Low_complexity Low_complexity 1 59 0 25 83 0 0 chr3 120879854 120879914 -97157244 + AT_rich Low_complexity Low_complexity 1 60 0 387 283 79 13 chr3 120882214 120882366 -97154792 - MIR3 SINE MIR -11 197 36 1767 132 0 68 chr3 120883647 120883958 -97153200 - AluJb SINE Alu -22 290 1 235 246 138 0 chr3 120884242 120884307 -97152851 + MIR3 SINE MIR 98 171 -37 931 174 29 6 chr3 120884686 120884858 -97152300 + AluJb SINE Alu 137 312 0 12942 133 45 26 chr3 120885115 120886395 -97150763 + Tigger1 DNA MER2_type 30 1284 -1134 2056 101 36 0 chr3 120886395 120886672 -97150486 + AluSg SINE Alu 1 287 -23 284 51 68 0 chr3 120886672 120886731 -97150427 + (TA)n Simple_repeat Simple_repeat 1 63 0 12942 133 45 26 chr3 120886731 120887793 -97149365 + Tigger1 DNA MER2_type 1283 2418 0 23 33 0 0 chr3 120888245 120888275 -97148883 + AT_rich Low_complexity Low_complexity 1 30 0 2165 106 3 0 chr3 120889549 120889875 -97147283 - AluSx SINE Alu 0 327 1 263 208 0 129 chr3 120889903 120890004 -97147154 + MIR SINE MIR 104 191 -71 2177 83 14 3 chr3 120890656 120890945 -97146213 + AluSg SINE Alu 2 293 -17 2454 81 0 3 chr3 120894053 120894363 -97142795 - AluSc SINE Alu 0 309 1 317 256 108 27 chr3 120894653 120894794 -97142364 - MIR SINE MIR -62 146 6 189 0 0 0 chr3 120895191 120895212 -97141946 + (T)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr3 120896013 120896035 -97141123 + AT_rich Low_complexity Low_complexity 1 22 0 747 285 66 12 chr3 120896148 120896390 -97140768 - MIR SINE MIR -2 260 6 344 325 25 25 chr3 120898012 120898169 -97138989 + MER5A DNA MER1_type 3 159 -30 22 35 0 0 chr3 120898568 120898597 -97138561 + AT_rich Low_complexity Low_complexity 1 29 0 1048 240 37 10 chr3 120898983 120899279 -97137879 - LTR16C LTR ERVL -12 479 176 2503 137 47 33 chr3 120899280 120899677 -97137481 + LTR22A LTR ERVK 1 406 -52 2360 101 0 3 chr3 120899677 120899985 -97137173 - AluSc SINE Alu -2 307 1 2503 137 47 33 chr3 120899985 120900039 -97137119 + LTR22A LTR ERVK 406 458 0 2337 117 0 0 chr3 120900642 120900951 -97136207 - AluSc SINE Alu 0 309 1 1162 164 51 99 chr3 120901139 120901571 -97135587 + Charlie1 DNA MER1_type 2351 2761 0 2516 128 33 21 chr3 120901626 120902055 -97135103 - MER57B LTR ERV1 0 434 1 296 299 47 0 chr3 120902078 120902185 -97134973 - MERVL LTR ERVL -640 4845 4734 2010 138 7 0 chr3 120902238 120902535 -97134623 + AluSx SINE Alu 1 299 -13 4351 233 63 32 chr3 120902763 120903003 -97134155 - L1ME1 LINE L1 -5 6161 5930 1944 151 36 14 chr3 120903003 120903368 -97133790 + MER93b LTR ERV1 1 373 0 4351 233 63 32 chr3 120903368 120903445 -97133713 - L1ME1 LINE L1 -236 5930 5857 2587 115 5 3 chr3 120903445 120903819 -97133339 + THE1C LTR MaLR 1 375 0 4351 233 63 32 chr3 120903819 120903889 -97133269 - L1ME1 LINE L1 -309 5857 5791 1827 174 42 0 chr3 120903889 120904222 -97132936 + MER7A DNA MER2_type 2 346 0 4351 233 63 32 chr3 120904222 120906173 -97130985 - L1ME1 LINE L1 -375 5791 3739 575 204 217 0 chr3 120906171 120906406 -97130752 - L1ME1 LINE L1 -2989 3157 2872 * 366 239 211 0 chr3 120906503 120906612 -97130546 - MIR SINE MIR -108 154 23 222 288 17 0 chr3 120907487 120907546 -97129612 - MIR SINE MIR -115 147 88 1587 214 42 40 chr3 120907739 120908193 -97128965 - MLT1C LTR MaLR 0 467 13 225 0 0 0 chr3 120908803 120908828 -97128330 + (A)n Simple_repeat Simple_repeat 1 25 0 207 167 0 0 chr3 120909430 120909472 -97127686 + GA-rich Low_complexity Low_complexity 2 43 0 2381 92 0 3 chr3 120911109 120911415 -97125743 + AluY SINE Alu 1 305 -6 276 181 24 24 chr3 120911576 120911659 -97125499 - MER97c DNA MER1_type? -27 1063 981 220 216 0 0 chr3 120911666 120911717 -97125441 + A-rich Low_complexity Low_complexity 1 51 0 232 283 33 76 chr3 120911983 120912018 -97125140 + MIR SINE MIR 21 56 -152 1986 145 0 0 chr3 120912018 120912352 -97124806 - AluSx SINE Alu 0 334 1 232 283 33 76 chr3 120912352 120912407 -97124751 + MIR SINE MIR 56 108 -100 273 280 181 6 chr3 120913274 120913456 -97123702 - MER112 DNA MER1_type -41 219 6 1987 169 34 0 chr3 120913461 120913811 -97123347 + MLT1A1 LTR MaLR 3 364 -1 21 57 0 0 chr3 120915004 120915039 -97122119 + AT_rich Low_complexity Low_complexity 1 35 0 641 189 91 11 chr3 120915081 120915256 -97121902 + LTR54B LTR ERV1 308 496 -2 2097 107 24 3 chr3 120915347 120915636 -97121522 + AluSc SINE Alu 1 295 -14 486 263 56 35 chr3 120915887 120916119 -97121039 + L1ME3A LINE L1 5078 5314 -832 2506 137 35 21 chr3 120916125 120916549 -97120609 - Tigger2a DNA MER2_type -4 430 1 1303 240 157 29 chr3 120916665 120917013 -97120145 + L1ME3A LINE L1 5500 5802 -368 4696 72 83 2 chr3 120917013 120917652 -97119506 + LTR8 LTR ERV1 1 691 0 1303 240 157 29 chr3 120917652 120917891 -97119267 + L1ME3A LINE L1 5802 6162 -8 2194 115 7 0 chr3 120917904 120918199 -97118959 + AluSq SINE Alu 3 299 -14 377 264 82 57 chr3 120918487 120918646 -97118512 - MIR SINE MIR -91 171 9 769 167 43 78 chr3 120918670 120918927 -97118231 - Charlie5 DNA MER1_type -31 2581 2334 575 177 24 8 chr3 120919047 120919171 -97117987 + MER34C LTR ERV1 5 130 -455 335 190 115 11 chr3 120919170 120919257 -97117901 - MER33 DNA MER1_type -259 65 1 * 2333 98 0 6 chr3 120920244 120920559 -97116599 + AluSq SINE Alu 1 313 0 24 0 0 0 chr3 120920746 120920770 -97116388 + AT_rich Low_complexity Low_complexity 1 24 0 2176 123 7 0 chr3 120920886 120921194 -97115964 - AluSg SINE Alu 0 310 1 182 184 149 69 chr3 120921307 120921394 -97115764 + MIR SINE MIR 79 172 -90 427 293 71 0 chr3 120921947 120922087 -97115071 + MIR SINE MIR 8 157 -105 304 341 17 17 chr3 120922178 120922351 -97114807 - L1ME LINE L1 -454 5708 5536 2022 111 30 13 chr3 120923838 120924136 -97113022 + AluSq SINE Alu 1 303 -10 584 314 61 72 chr3 120924952 120925395 -97111763 - L2 LINE L2 0 3272 2835 312 300 91 27 chr3 120925461 120925571 -97111587 + L2 LINE L2 3136 3252 -20 13510 66 20 3 chr3 120926225 120928056 -97109102 + HERVL-A1 LTR ERVL 3792 5654 0 1740 81 31 8 chr3 120928056 120928314 -97108844 + MLT2A1 LTR ERVL 1 264 -180 216 158 0 0 chr3 120928323 120928361 -97108797 + (TATG)n Simple_repeat Simple_repeat 2 39 0 13265 200 14 16 chr3 120928400 120933319 -97103839 + L1PB1 LINE L1 1877 6853 0 1595 134 0 0 chr3 120933325 120933572 -97103586 - L1P LINE L1 -1880 4266 4020 * 3204 135 32 5 chr3 120933570 120934619 -97102539 - L1P4 LINE L1 -376 6436 5362 244 176 78 0 chr3 120934635 120934686 -97102472 + L1 LINE L1 4294 4348 -1798 14677 197 9 7 chr3 120934698 120937946 -97099212 - L1P4 LINE L1 -1798 4999 1734 592 155 207 0 chr3 120937952 120938068 -97099090 + MER20 DNA MER1_type 80 219 0 186 240 0 0 chr3 120938213 120938263 -97098895 + (TA)n Simple_repeat Simple_repeat 1 50 0 241 276 17 0 chr3 120938397 120938455 -97098703 + (CATATA)n Simple_repeat Simple_repeat 5 63 0 368 283 20 10 chr3 120938544 120938643 -97098515 + MER5B DNA MER1_type 63 162 -16 344 263 111 0 chr3 120939933 120940032 -97097126 - L2 LINE L2 -4 3309 3200 924 215 10 24 chr3 120940032 120940100 -97097058 - MER3 DNA MER1_type -3 206 139 1663 147 98 4 chr3 120940100 120940399 -97096759 + AluSx SINE Alu 1 312 0 924 215 10 24 chr3 120940399 120940539 -97096619 - MER3 DNA MER1_type -70 139 1 2663 130 61 12 chr3 120940554 120940962 -97096196 + MSTA LTR MaLR 1 428 0 2298 132 112 25 chr3 120941028 120941422 -97095736 + MSTA LTR MaLR 1 428 0 2422 62 10 0 chr3 120941474 120941782 -97095376 - AluY SINE Alu 0 311 1 222 205 0 0 chr3 120942081 120942120 -97095038 - MIR SINE MIR -35 227 189 909 194 0 12 chr3 120942121 120942281 -97094877 + FRAM SINE Alu 1 158 -18 441 202 85 0 chr3 120942287 120942381 -97094777 - MIR SINE MIR -70 192 91 436 278 64 34 chr3 120942423 120942653 -97094505 - MLT1J2 LTR MaLR -23 419 191 498 192 58 75 chr3 120942658 120942679 -97094479 - MER20 DNA MER1_type -5 214 194 2617 181 39 47 chr3 120942679 120943194 -97093964 + MLT2B2 LTR ERVL 5 515 0 498 192 58 75 chr3 120943194 120943292 -97093866 - MER20 DNA MER1_type -25 194 97 475 271 41 35 chr3 120943358 120943535 -97093623 - MLT1J1 LTR MaLR -252 198 19 2281 111 0 3 chr3 120943645 120943951 -97093207 - AluSx SINE Alu -7 305 1 1899 137 11 0 chr3 120944576 120944853 -97092305 + AluSx SINE Alu 1 280 -32 216 0 0 0 chr3 120944856 120944880 -97092278 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 25 31 0 0 chr3 120945250 120945282 -97091876 + AT_rich Low_complexity Low_complexity 1 32 0 230 240 100 0 chr3 120945409 120945459 -97091699 + Tigger5 DNA MER2_type 1 55 -2268 305 213 80 13 chr3 120945479 120945554 -97091604 + Tigger5 DNA MER2_type 2244 2323 0 205 259 0 17 chr3 120945910 120945968 -97091190 + GA-rich Low_complexity Low_complexity 2 58 0 577 306 53 29 chr3 120946778 120947023 -97090135 + MIR SINE MIR 5 255 -7 202 306 41 20 chr3 120947023 120947121 -97090037 + MIR SINE MIR 161 260 -2 233 336 30 30 chr3 120947454 120947585 -97089573 - L3 LINE CR1 -830 747 617 252 231 0 0 chr3 120947672 120947750 -97089408 + CT-rich Low_complexity Low_complexity 2 79 0 273 368 63 22 chr3 120947961 120948276 -97088882 - L1MC/D LINE L1 -477 5882 5555 195 204 0 0 chr3 120949919 120949968 -97087190 + (CATG)n Simple_repeat Simple_repeat 2 50 0 763 81 17 139 chr3 120950384 120950436 -97086722 - L1M1 LINE L1 -871 5431 5374 2144 133 3 0 chr3 120950436 120950738 -97086420 - AluSx SINE Alu -9 303 1 763 81 17 139 chr3 120950738 120950857 -97086301 - L1M1 LINE L1 -928 5374 5281 692 248 85 30 chr3 120951080 120951375 -97085783 - L1ME3A LINE L1 -221 5949 5639 2223 112 3 16 chr3 120951445 120951759 -97085399 + AluSq SINE Alu 1 310 -3 718 221 0 0 chr3 120951862 120951984 -97085174 - FLAM_C SINE Alu -20 123 2 440 253 172 0 chr3 120952010 120952293 -97084865 - L1ME3A LINE L1 -651 5511 5191 197 295 252 9 chr3 120952840 120953050 -97084108 + MIR SINE MIR 2 262 0 482 246 0 48 chr3 120953830 120953956 -97083202 + MIR SINE MIR 36 155 -107 359 233 138 51 chr3 120955610 120955903 -97081255 - LTR48 LTR ERV1 0 737 338 267 276 52 52 chr3 120955940 120956074 -97081084 - LTR48B LTR ERV1 -380 264 131 341 253 19 25 chr3 120956662 120956824 -97080334 - FRAM SINE Alu -5 161 1 2467 67 0 0 chr3 120957080 120957377 -97079781 - AluY SINE Alu -14 297 1 369 134 73 0 chr3 120957879 120957961 -97079197 - AluSg/x SINE Alu -2 300 213 2288 221 37 49 chr3 120958972 120959541 -97077617 + MER68 LTR ERV1 1 562 0 2327 112 0 0 chr3 120960319 120960623 -97076535 + AluSx SINE Alu 3 306 -6 474 256 8 16 chr3 120960724 120960853 -97076305 + L2 LINE L2 3186 3313 0 345 268 0 21 chr3 120961428 120961525 -97075633 + LTR67 LTR ERVL 459 553 -4 250 314 105 19 chr3 120961931 120962036 -97075122 + MER5B DNA MER1_type 3 116 -62 1996 134 0 55 chr3 120962038 120962367 -97074791 - AluSx SINE Alu -1 311 1 265 182 234 26 chr3 120962372 120962449 -97074709 - L1MC4 LINE L1 -1 8041 7949 238 324 10 0 chr3 120962475 120962577 -97074581 + (TA)n Simple_repeat Simple_repeat 1 103 0 3255 261 150 18 chr3 120962621 120963864 -97073294 - L1MC4 LINE L1 -174 7868 6461 2041 181 5 24 chr3 120964311 120964682 -97072476 - MLT1A1 LTR MaLR 0 365 2 21 0 0 0 chr3 120965744 120965765 -97071393 + AT_rich Low_complexity Low_complexity 1 21 0 2201 101 0 23 chr3 120966094 120966402 -97070756 + AluSq SINE Alu 1 301 -12 319 278 56 0 chr3 120966516 120966606 -97070552 - MER63 DNA MER1_type -2 1058 964 * 448 220 156 0 chr3 120966598 120966707 -97070451 - MER63 DNA MER1_type -84 752 1 5042 222 15 19 chr3 120966758 120967435 -97069723 - L1P LINE L1 -1778 4368 3695 198 0 0 0 chr3 120967435 120967457 -97069701 + (TTG)n Simple_repeat Simple_repeat 3 24 0 5042 222 15 19 chr3 120967457 120967950 -97069208 - L1P LINE L1 -2451 3695 3202 * 6847 167 25 6 chr3 120967945 120968595 -97068563 + L1PA16 LINE L1 3886 4522 -1644 2073 163 73 34 chr3 120968595 120969007 -97068151 - MSTA LTR MaLR 0 428 1 6847 167 25 6 chr3 120969007 120970595 -97066563 + L1PA16 LINE L1 4522 6166 0 533 276 45 13 chr3 120970868 120971024 -97066134 - MIR3 SINE MIR -4 204 44 354 277 24 0 chr3 120972240 120972323 -97064835 + MER81 DNA DNA 2 86 -28 286 358 42 0 chr3 120972342 120972462 -97064696 - MIR SINE MIR -117 145 21 507 242 57 0 chr3 120972710 120972834 -97064324 - MER94 DNA DNA 0 134 4 238 296 14 0 chr3 120972975 120973046 -97064112 - MER63 DNA MER1_type 0 1060 989 524 137 10 0 chr3 120973151 120973253 -97063905 + CT-rich Low_complexity Low_complexity 1 103 0 2274 104 0 3 chr3 120973346 120973644 -97063514 - AluSg SINE Alu -12 298 2 584 122 0 0 chr3 120974292 120974374 -97062784 + AluS SINE Alu 225 306 -5 319 302 101 13 chr3 120974426 120974575 -97062583 + ERVL LTR ERVL 5 166 -5598 2096 115 20 7 chr3 120974641 120974937 -97062221 - L1PB1 LINE L1 0 6151 5852 183 244 89 0 chr3 120975151 120975196 -97061962 - L2 LINE L2 -5 3267 3219 2390 94 3 0 chr3 120975323 120975631 -97061527 + AluSx SINE Alu 1 309 -3 8891 20 1 291 chr3 120975809 120977760 -97059398 + SVA Other Other 1 1386 0 1900 169 5 86 chr3 120978019 120978415 -97058743 - MLT1A1 LTR MaLR 0 365 2 2320 94 3 3 chr3 120978425 120978723 -97058435 - AluSx SINE Alu -14 298 1 263 375 21 0 chr3 120978728 120978824 -97058334 - L2 LINE L2 -16 3297 3200 338 286 55 0 chr3 120978912 120979003 -97058155 + MIR SINE MIR 31 126 -136 574 234 135 31 chr3 120979104 120979326 -97057832 - MLT1J2 LTR MaLR -205 245 1 428 302 200 44 chr3 120979444 120979711 -97057447 - L2 LINE L2 -849 2465 2241 210 37 0 0 chr3 120979711 120979738 -97057420 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 428 302 200 44 chr3 120979738 120979900 -97057258 - L2 LINE L2 -1073 2241 1969 700 296 77 15 chr3 120979960 120980401 -97056757 + LTR33 LTR ERVL 40 520 -3 361 310 62 62 chr3 120980530 120980901 -97056257 - L2 LINE L2 -1548 1766 1396 317 355 113 25 chr3 120980912 120981312 -97055846 - L2 LINE L2 -2173 1141 707 277 269 109 8 chr3 120982672 120982791 -97054367 - L1ME4a LINE L1 -12 6109 5979 2494 124 51 0 chr3 120982891 120983245 -97053913 + MER83C LTR ERV1 1 372 -1 533 252 181 42 chr3 120983290 120983337 -97053821 + MLT1J2 LTR MaLR 1 40 -410 2179 125 10 10 chr3 120983337 120983649 -97053509 - AluSx SINE Alu 0 312 1 533 252 181 42 chr3 120983649 120983868 -97053290 + MLT1J2 LTR MaLR 40 288 -162 2294 100 0 3 chr3 120984032 120984333 -97052825 - AluSg SINE Alu -10 300 1 824 235 91 106 chr3 120984354 120984999 -97052159 + MLT1H LTR MaLR 1 590 0 1718 222 34 29 chr3 120985006 120985452 -97051706 - MER39 LTR ERV1 0 707 260 1161 342 72 31 chr3 120985572 120986340 -97050818 - ERVL LTR ERVL -3925 1839 1041 362 314 69 16 chr3 120986594 120986828 -97050330 - ERVL LTR ERVL -5067 597 355 716 232 246 26 chr3 120987074 120987136 -97050022 - LTR50 LTR ERVL -2 793 746 2228 98 3 7 chr3 120987136 120987431 -97049727 - AluSq SINE Alu -19 294 1 716 232 246 26 chr3 120987431 120987944 -97049214 - LTR50 LTR ERVL -49 746 9 1863 128 25 0 chr3 120988055 120988336 -97048822 + AluSx SINE Alu 2 289 -23 206 31 0 31 chr3 120988339 120988371 -97048787 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 24 0 0 0 chr3 120988411 120988435 -97048723 + AT_rich Low_complexity Low_complexity 1 24 0 218 333 164 14 chr3 120989211 120989418 -97047740 + L2 LINE L2 1349 1586 -1728 238 218 36 0 chr3 120989423 120989478 -97047680 + L2 LINE L2 3214 3270 -2 1690 189 42 71 chr3 120989586 120989966 -97047192 + MLT2C1 LTR ERVL 1 370 -27 8301 49 9 0 chr3 120989966 120990923 -97046235 + LTR5 LTR ERVK 1 966 -3 1690 189 42 71 chr3 120990923 120990949 -97046209 + MLT2C1 LTR ERVL 370 395 -2 2350 131 129 5 chr3 120991275 120991656 -97045502 - MSTA LTR MaLR 0 428 1 8171 23 0 4 chr3 120991813 120992825 -97044333 + L1PA3 LINE L1 5145 6152 -3 183 80 0 0 chr3 120993672 120993697 -97043461 + (A)n Simple_repeat Simple_repeat 1 25 0 283 294 174 9 chr3 120994512 120994621 -97042537 + L2 LINE L2 3181 3307 -6 733 159 204 0 chr3 120994875 120995032 -97042126 + MER53 DNA DNA 1 189 0 1256 160 9 36 chr3 120996146 120996371 -97040787 - MER20 DNA MER1_type 0 219 1 210 37 0 0 chr3 120996794 120996821 -97040337 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 225 0 0 0 chr3 120996820 120996845 -97040313 + (TG)n Simple_repeat Simple_repeat 1 25 0 215 378 18 9 chr3 120997015 120997126 -97040032 + L2 LINE L2 2891 3002 -270 257 95 63 0 chr3 120997156 120997219 -97039939 + (CA)n Simple_repeat Simple_repeat 2 68 0 246 266 78 78 chr3 120997300 120997428 -97039730 + L2 LINE L2 3178 3305 -8 251 323 90 118 chr3 120998752 120999040 -97038118 + L2 LINE L2 2992 3271 -1 305 377 63 6 chr3 120999634 120999809 -97037349 - MIR SINE MIR -74 188 4 764 219 92 6 chr3 120999860 121000024 -97037134 + MER45A DNA AcHobo 1 178 0 470 247 43 25 chr3 121000024 121000181 -97036977 - MIR3 SINE MIR -5 203 44 2215 122 3 0 chr3 121000754 121001058 -97036100 + AluSx SINE Alu 1 305 -7 339 214 22 22 chr3 121001236 121001325 -97035833 + AluSg SINE Alu 3 91 -209 486 216 45 22 chr3 121001426 121001560 -97035598 - AluYb8 SINE Alu -180 138 2 441 215 66 0 chr3 121001563 121001684 -97035474 + L1M4 LINE L1 2531 2659 -3487 1709 184 0 10 chr3 121001687 121001986 -97035172 + AluJo SINE Alu 1 296 -16 215 334 57 0 chr3 121002136 121002242 -97034916 + MIR SINE MIR 38 154 -61 2384 92 0 7 chr3 121002766 121003072 -97034086 - AluSx SINE Alu -8 304 1 1018 105 0 14 chr3 121003150 121003293 -97033865 - AluSq/x SINE Alu -172 141 1 243 270 10 20 chr3 121003567 121003667 -97033491 + CT-rich Low_complexity Low_complexity 2 100 0 270 0 0 0 chr3 121004610 121004640 -97032518 + (CA)n Simple_repeat Simple_repeat 2 31 0 227 177 76 51 chr3 121005269 121005340 -97031818 - MER5A DNA MER1_type -37 152 77 378 0 0 0 chr3 121005340 121005382 -97031776 + (TG)n Simple_repeat Simple_repeat 2 43 0 368 223 92 46 chr3 121005702 121005832 -97031326 - MIR SINE MIR -112 150 15 187 306 124 25 chr3 121006371 121006492 -97030666 + L2 LINE L2 3129 3261 -11 1829 40 53 9 chr3 121006571 121006798 -97030360 - AluY SINE Alu -11 300 64 201 280 75 28 chr3 121007520 121007627 -97029531 + L2 LINE L2 2273 2384 -930 198 248 69 50 chr3 121007825 121007926 -97029232 + L2 LINE L2 2719 2821 -493 967 246 106 35 chr3 121008516 121008857 -97028301 - MLT1A1 LTR MaLR 0 365 1 669 190 18 15 chr3 121009030 121009364 -97027794 + GA-rich Low_complexity Low_complexity 1 335 0 1254 95 11 11 chr3 121009580 121009769 -97027389 + AluYa5 SINE Alu 117 305 -6 857 102 0 8 chr3 121009810 121009937 -97027221 - L1PA15 LINE L1 0 6165 6040 2254 112 0 3 chr3 121009938 121010242 -97026916 + AluSx SINE Alu 1 303 -9 3458 116 8 30 chr3 121010303 121010753 -97026405 - L1PA15 LINE L1 -133 6032 5594 2333 112 0 3 chr3 121010753 121011067 -97026091 + AluSq SINE Alu 1 313 0 3458 116 8 30 chr3 121011067 121011141 -97026017 - L1PA15 LINE L1 -571 5594 5520 1054 188 10 0 chr3 121011143 121011335 -97025823 + L1M2 LINE L1 5513 5706 -594 * 1193 253 31 14 chr3 121011329 121011622 -97025536 - L1 LINE L1 -3372 2774 2477 534 85 93 0 chr3 121011624 121011917 -97025241 + (TA)n Simple_repeat Simple_repeat 1 320 0 869 229 22 13 chr3 121011920 121012151 -97025007 - L1 LINE L1 -3661 2485 2253 890 200 6 0 chr3 121012411 121012586 -97024572 - L1M4 LINE L1 -3600 2546 2371 2264 116 3 0 chr3 121012751 121013061 -97024097 + AluSx SINE Alu 1 311 -1 255 61 0 0 chr3 121013823 121013856 -97023302 + (CTG)n Simple_repeat Simple_repeat 3 35 0 28 48 0 0 chr3 121014425 121014467 -97022691 + AT_rich Low_complexity Low_complexity 1 42 0 199 204 0 0 chr3 121014770 121014814 -97022344 - L2 LINE L2 -1 3271 3228 996 146 7 7 chr3 121014874 121015025 -97022133 + FRAM SINE Alu 11 161 -15 1038 162 17 2 chr3 121015584 121015828 -97021330 - MER2 DNA MER2_type -9 336 42 2245 102 0 14 chr3 121015879 121016172 -97020986 - AluSx SINE Alu -23 289 1 1047 280 78 31 chr3 121016205 121016591 -97020567 - HERVL LTR ERVL -3805 1849 1446 565 263 0 50 chr3 121016621 121016781 -97020377 - HERVL LTR ERVL -4351 1413 1262 663 172 15 0 chr3 121016797 121016931 -97020227 - Charlie1 DNA MER1_type -12 2749 2614 * 3196 166 160 19 chr3 121016922 121017692 -97019466 - Charlie1 DNA MER1_type -452 2309 1432 1029 223 9 0 chr3 121017693 121017922 -97019236 + L1 LINE L1 2636 2866 -3280 3730 60 0 2 chr3 121018046 121018492 -97018666 + LTR5 LTR ERVK 522 966 -3 64729 13 1 0 chr3 121018499 121025639 -97011519 + HERVK LTR ERVK 4 7148 -95 452 101 18 147 chr3 121025639 121025734 -97011424 + SVA Other Other 857 938 -448 3879 87 49 2 chr3 121025734 121026306 -97010852 + LTR5 LTR ERVK 1 599 -370 452 101 18 147 chr3 121026306 121026319 -97010839 + SVA Other Other 938 951 -435 6242 205 15 43 chr3 121026445 121028032 -97009126 + L1 LINE L1 2876 4417 -1729 2239 114 0 19 chr3 121028260 121028576 -97008582 + AluSp SINE Alu 1 310 -3 4873 62 2 0 chr3 121028843 121029454 -97007704 - L1P LINE L1 -1101 5045 4434 4198 113 10 54 chr3 121029467 121030284 -97006874 + L1PA7 LINE L1 5254 6034 -120 444 108 0 0 chr3 121080287 121080352 -96956806 - AluS SINE Alu -246 67 3 2987 129 9 7 chr3 121080354 121080805 -96956353 + L1PA15 LINE L1 5581 6032 -133 232 71 0 0 chr3 121080838 121080866 -96956292 - U6 snRNA snRNA -79 28 1 2142 112 0 3 chr3 121080866 121081170 -96955988 - AluSx SINE Alu -9 303 1 798 102 0 8 chr3 121081171 121081298 -96955860 + L1PA15 LINE L1 6040 6165 0 2234 105 0 0 chr3 121081339 121081644 -96955514 - AluY SINE Alu -6 305 1 440 215 66 0 chr3 121081646 121081767 -96955391 + L1M4 LINE L1 2531 2659 -3487 1578 190 0 7 chr3 121081770 121082070 -96955088 + AluJo SINE Alu 1 298 -14 219 332 93 12 chr3 121082220 121082381 -96954777 + MIR SINE MIR 38 216 -46 2038 128 10 0 chr3 121082854 121083151 -96954007 - AluSx SINE Alu -12 300 1 540 244 198 37 chr3 121083153 121083370 -96953788 + MLT1J2 LTR MaLR 37 288 -162 2186 100 0 3 chr3 121083534 121083835 -96953323 - AluSg SINE Alu -10 300 1 820 269 54 34 chr3 121083856 121084150 -96953008 + MLT1H LTR MaLR 1 300 -249 550 199 137 6 chr3 121084269 121084430 -96952728 + MLT1H LTR MaLR 324 505 0 571 286 22 39 chr3 121084728 121084906 -96952252 - MIR SINE MIR -87 175 1 199 129 0 0 chr3 121085241 121085272 -96951886 + MIR SINE MIR 113 143 -65 334 228 174 34 chr3 121085289 121085438 -96951720 - MER5B DNA MER1_type -5 173 4 258 333 22 0 chr3 121086172 121086262 -96950896 + MIR SINE MIR 106 197 -65 803 232 66 25 chr3 121086335 121086576 -96950582 + MIR SINE MIR 11 261 -1 1057 98 115 6 chr3 121086597 121086771 -96950387 + MER107 DNA MER1_type 5 197 0 356 290 246 34 chr3 121086924 121087221 -96949937 - L3 LINE CR1 -140 1437 1078 255 213 128 71 chr3 121088181 121088322 -96948836 - MER34C LTR ERV1 0 585 394 1150 123 0 0 chr3 121088331 121088486 -96948672 + AluSg/x SINE Alu 131 322 0 301 27 0 0 chr3 121088486 121088523 -96948635 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 1854 114 104 3 chr3 121088523 121088820 -96948338 + Tigger4(Zombi) DNA MER2_type 2399 2725 -6 202 363 79 33 chr3 121088880 121089095 -96948063 + L2 LINE L2 2582 2806 -508 264 350 40 0 chr3 121089111 121089211 -96947947 + MER5A DNA MER1_type 86 189 0 188 258 52 113 chr3 121089332 121089429 -96947729 + L2 LINE L2 2941 3031 -241 321 314 0 58 chr3 121089445 121089601 -96947557 - L2 LINE L2 -11 3302 3156 454 186 10 102 chr3 121089627 121089752 -96947406 + MLT1D LTR MaLR 1 107 -409 234 0 0 0 chr3 121089786 121089812 -96947346 + (TG)n Simple_repeat Simple_repeat 1 26 0 634 173 7 29 chr3 121090287 121090426 -96946732 + MLT1D LTR MaLR 94 229 -276 1049 335 54 36 chr3 121090588 121091250 -96945908 - ERVL LTR ERVL -4050 1714 1041 362 314 69 16 chr3 121091504 121091738 -96945420 - ERVL LTR ERVL -5067 597 355 2083 115 3 10 chr3 121092046 121092342 -96944816 - AluSq SINE Alu -19 294 1 647 349 27 24 chr3 121092344 121092674 -96944484 - MLT1I LTR MaLR -78 331 1 541 311 24 12 chr3 121092897 121093061 -96944097 + MIR SINE MIR 3 168 -94 8171 23 6 3 chr3 121093448 121094557 -96942601 - L1PA3 LINE L1 -3 6152 5046 1486 39 6 0 chr3 121094559 121094741 -96942417 + L1P LINE L1 4212 4394 -1752 10888 21 0 2 chr3 121094847 121096069 -96941089 - HERVK LTR ERVK -3714 3529 2310 280 359 83 0 chr3 121096473 121096618 -96940540 + L3 LINE CR1 398 554 -1023 1713 177 0 14 chr3 121097004 121097332 -96939826 + AluJo SINE Alu 1 324 0 23 0 0 0 chr3 121097511 121097534 -96939624 + AT_rich Low_complexity Low_complexity 1 23 0 187 283 150 0 chr3 121097888 121097948 -96939210 - L2 LINE L2 -40 3232 3164 195 42 0 0 chr3 121098013 121098037 -96939121 + (TCTCTG)n Simple_repeat Simple_repeat 2 25 0 507 132 13 0 chr3 121098167 121098243 -96938915 - MLT1I LTR MaLR 0 409 333 708 145 8 107 chr3 121098243 121098485 -96938673 - AluSp SINE Alu -11 302 85 377 247 11 11 chr3 121099804 121099897 -96937261 - MIR SINE MIR -110 152 60 688 282 32 44 chr3 121100566 121100671 -96936487 - MIR SINE MIR -4 258 153 4200 91 32 0 chr3 121100671 121101208 -96935950 - MER41A LTR ERV1 0 554 1 688 282 32 44 chr3 121101208 121101350 -96935808 - MIR SINE MIR -109 153 14 376 325 103 20 chr3 121101745 121101948 -96935210 - MIR SINE MIR -21 241 22 3444 93 107 32 chr3 121103555 121104081 -96933077 - MER34B LTR ERV1 0 565 1 25 31 0 0 chr3 121105196 121105228 -96931930 + AT_rich Low_complexity Low_complexity 1 32 0 272 246 46 0 chr3 121105755 121105820 -96931338 - MIR SINE MIR -71 191 124 427 211 136 20 chr3 121108291 121108438 -96928720 - MER5A DNA MER1_type 0 189 26 205 325 120 34 chr3 121108798 121108915 -96928243 + MIR3 SINE MIR 10 136 -72 959 246 106 35 chr3 121109920 121110261 -96926897 - MLT1A1 LTR MaLR 0 365 1 669 190 18 15 chr3 121110434 121110768 -96926390 + GA-rich Low_complexity Low_complexity 1 335 0 2141 96 3 7 chr3 121111009 121111301 -96925857 - AluSc SINE Alu -18 291 1 498 184 298 7 chr3 121111384 121111525 -96925633 + MER5A DNA MER1_type 7 188 -1 2477 84 3 0 chr3 121112040 121112349 -96924809 - AluSp SINE Alu -3 310 1 701 257 87 58 chr3 121112598 121112976 -96924182 - L2 LINE L2 -2 3311 2923 23 0 0 0 chr3 121114414 121114437 -96922721 + AT_rich Low_complexity Low_complexity 1 23 0 1247 177 4 18 chr3 121115582 121115808 -96921350 - MLT2C1 LTR ERVL -174 223 1 238 218 36 0 chr3 121115916 121115971 -96921187 - L2 LINE L2 -2 3270 3214 218 333 164 14 chr3 121115976 121116183 -96920975 - L2 LINE L2 -1728 1586 1349 24 0 0 0 chr3 121116960 121116984 -96920174 + AT_rich Low_complexity Low_complexity 1 24 0 206 31 0 31 chr3 121117024 121117056 -96920102 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 294 195 0 62 chr3 121117270 121117383 -96919775 + (CCCG)n Simple_repeat Simple_repeat 3 108 0 496 155 0 0 chr3 121117451 121117535 -96919623 + SVA Other Other 1300 1383 -3 1915 167 5 86 chr3 121117797 121118193 -96918965 - MLT1A1 LTR MaLR 0 365 2 2320 94 3 3 chr3 121118203 121118501 -96918657 - AluSx SINE Alu -14 298 1 263 375 21 0 chr3 121118506 121118602 -96918556 - L2 LINE L2 -16 3297 3200 338 286 55 0 chr3 121118690 121118781 -96918377 + MIR SINE MIR 31 126 -136 518 235 49 31 chr3 121118908 121119104 -96918054 - MLT1J2 LTR MaLR -237 209 1 14534 128 61 7 chr3 121119866 121122154 -96915004 - Tigger1 DNA MER2_type 0 2418 7 3843 127 6 51 chr3 121122296 121122941 -96914217 - L1MC2 LINE L1 -8 6336 5721 1492 226 36 30 chr3 121123351 121123714 -96913444 - MLT1A1 LTR MaLR 0 365 1 325 278 124 0 chr3 121125211 121125308 -96911850 - MIR SINE MIR -142 120 12 395 260 24 16 chr3 121126987 121127110 -96910048 - MER5B DNA MER1_type -53 125 2 515 233 103 7 chr3 121128119 121128265 -96908893 + MIR SINE MIR 91 250 -12 828 196 55 0 chr3 121128327 121128490 -96908668 + MER5A DNA MER1_type 18 189 0 1885 198 36 47 chr3 121129308 121129752 -96907406 - MER39 LTR ERV1 -9 698 260 412 286 41 0 chr3 121129830 121129928 -96907230 - L2 LINE L2 -9 3263 3162 333 0 0 0 chr3 121130107 121130144 -96907014 + (CA)n Simple_repeat Simple_repeat 2 38 0 1432 204 10 23 chr3 121131388 121131692 -96905466 - AluSx SINE Alu -2 300 1 243 270 10 20 chr3 121132816 121132916 -96904242 + GA-rich Low_complexity Low_complexity 2 100 0 1018 105 0 14 chr3 121133190 121133333 -96903825 + AluSq/x SINE Alu 1 141 -172 2347 97 10 3 chr3 121133411 121133721 -96903437 + AluSp SINE Alu 1 312 -1 2331 107 13 0 chr3 121133737 121134046 -96903112 + AluSq SINE Alu 1 313 0 538 111 0 0 chr3 121134048 121134120 -96903038 - L1P4 LINE L1 -574 5591 5520 1054 188 10 0 chr3 121134122 121134314 -96902844 + L1M2 LINE L1 5513 5706 -594 * 1193 253 31 14 chr3 121134308 121134601 -96902557 - L1 LINE L1 -3372 2774 2477 534 99 83 0 chr3 121134603 121134867 -96902291 + (TA)n Simple_repeat Simple_repeat 1 285 0 29 0 0 0 chr3 121134870 121134899 -96902259 + AT_rich Low_complexity Low_complexity 1 29 0 880 225 22 13 chr3 121134899 121135130 -96902028 - L1 LINE L1 -3661 2485 2253 890 200 6 0 chr3 121135390 121135565 -96901593 - L1M4 LINE L1 -3600 2546 2371 2242 119 3 0 chr3 121135730 121136040 -96901118 + AluSx SINE Alu 1 311 -1 255 61 0 0 chr3 121136802 121136835 -96900323 + (CTG)n Simple_repeat Simple_repeat 3 35 0 28 48 0 0 chr3 121137404 121137446 -96899712 + AT_rich Low_complexity Low_complexity 1 42 0 199 204 0 0 chr3 121137749 121137793 -96899365 - L2 LINE L2 -1 3271 3228 996 146 7 7 chr3 121137853 121138004 -96899154 + FRAM SINE Alu 11 161 -15 1038 162 17 2 chr3 121138563 121138807 -96898351 - MER2 DNA MER2_type -9 336 42 2245 102 0 14 chr3 121138858 121139151 -96898007 - AluSx SINE Alu -23 289 1 1047 280 78 31 chr3 121139184 121139570 -96897588 - HERVL LTR ERVL -3805 1849 1446 565 263 0 50 chr3 121139600 121139760 -96897398 - HERVL LTR ERVL -4351 1413 1262 663 172 15 0 chr3 121139776 121139910 -96897248 - Charlie1 DNA MER1_type -12 2749 2614 * 3196 166 160 19 chr3 121139901 121140671 -96896487 - Charlie1 DNA MER1_type -452 2309 1432 2785 224 3 29 chr3 121140672 121141364 -96895794 + L1 LINE L1 2636 3309 -2837 355 278 28 9 chr3 121142443 121142551 -96894607 - L2 LINE L2 -14 3299 3190 23 0 0 0 chr3 121143352 121143375 -96893783 + AT_rich Low_complexity Low_complexity 1 23 0 553 228 198 5 chr3 121143788 121143985 -96893173 + L2 LINE L2 3057 3291 -22 23 0 0 0 chr3 121143987 121144010 -96893148 + AT_rich Low_complexity Low_complexity 1 23 0 204 331 99 16 chr3 121144195 121144316 -96892842 + L3 LINE CR1 989 1119 -458 241 284 0 45 chr3 121144581 121144669 -96892489 + AluSg SINE Alu 6 89 -211 1447 6 0 6 chr3 121144669 121144832 -96892326 + HERVK LTR ERVK 3471 3632 -3611 1829 40 53 9 chr3 121145221 121145448 -96891710 + AluY SINE Alu 64 300 -11 368 223 92 46 chr3 121146187 121146317 -96890841 + MIR SINE MIR 15 150 -112 378 0 0 0 chr3 121146637 121146679 -96890479 + (CA)n Simple_repeat Simple_repeat 2 43 0 227 177 76 51 chr3 121146679 121146750 -96890408 + MER5A DNA MER1_type 77 152 -37 270 0 0 0 chr3 121147379 121147409 -96889749 + (TG)n Simple_repeat Simple_repeat 2 31 0 1164 302 24 27 chr3 121148411 121148487 -96888671 - MLT1I LTR MaLR 0 409 334 2260 96 3 7 chr3 121148487 121148790 -96888368 - AluSp SINE Alu -11 302 1 1164 302 24 27 chr3 121148790 121149123 -96888035 - MLT1I LTR MaLR -75 334 1 817 321 12 8 chr3 121149346 121149592 -96887566 + MIR SINE MIR 3 249 -13 1578 212 13 7 chr3 121149734 121150036 -96887122 + AluJo SINE Alu 1 304 -8 737 264 100 9 chr3 121150162 121150393 -96886765 + MIR SINE MIR 9 260 -2 249 354 0 0 chr3 121150390 121150472 -96886686 - MIR SINE MIR -69 139 58 * 638 272 22 22 chr3 121150752 121150936 -96886222 - MIR SINE MIR -16 246 63 384 281 82 7 chr3 121151008 121151154 -96886004 - L1ME4a LINE L1 -3 6118 5962 370 281 15 59 chr3 121152362 121152497 -96884661 - L2 LINE L2 0 3272 3144 183 80 0 0 chr3 121153488 121153513 -96883645 + (A)n Simple_repeat Simple_repeat 1 25 0 283 294 174 9 chr3 121154328 121154437 -96882721 + L2 LINE L2 3181 3307 -6 733 159 204 0 chr3 121154691 121154848 -96882310 + MER53 DNA DNA 1 189 0 1256 160 9 36 chr3 121155962 121156187 -96880971 - MER20 DNA MER1_type 0 219 1 210 37 0 0 chr3 121156610 121156637 -96880521 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 225 0 0 0 chr3 121156636 121156661 -96880497 + (TG)n Simple_repeat Simple_repeat 1 25 0 215 378 18 9 chr3 121156831 121156942 -96880216 + L2 LINE L2 2891 3002 -270 257 95 63 0 chr3 121156972 121157035 -96880123 + (CA)n Simple_repeat Simple_repeat 2 68 0 246 266 78 78 chr3 121157116 121157244 -96879914 + L2 LINE L2 3178 3305 -8 17174 16 1 1 chr3 121158029 121159949 -96877209 - HERVK LTR ERVK -5323 1920 1 8301 49 9 0 chr3 121159952 121160909 -96876249 - LTR5 LTR ERVK -3 966 1 437 84 11 168 chr3 121160909 121161004 -96876154 - SVA Other Other -450 936 857 5254 19 0 2 chr3 121161004 121161598 -96875560 - HERVK LTR ERVK -95 7148 6556 464 144 10 52 chr3 121162225 121162322 -96874836 - MLT1D LTR MaLR -319 186 94 251 323 90 118 chr3 121163069 121163357 -96873801 + L2 LINE L2 2992 3271 -1 305 377 63 6 chr3 121163951 121164126 -96873032 - MIR SINE MIR -74 188 4 764 219 92 6 chr3 121164177 121164341 -96872817 + MER45A DNA AcHobo 1 178 0 470 247 43 25 chr3 121164341 121164498 -96872660 - MIR3 SINE MIR -5 203 44 1874 151 7 7 chr3 121165071 121165376 -96871782 + AluSx SINE Alu 1 305 -7 2349 109 0 0 chr3 121165551 121165855 -96871303 + AluSg SINE Alu 1 304 -6 474 256 8 16 chr3 121165956 121166085 -96871073 + L2 LINE L2 3186 3313 0 345 268 0 21 chr3 121166660 121166757 -96870401 + LTR67 LTR ERVL 459 553 -4 250 314 105 19 chr3 121167163 121167268 -96869890 + MER5B DNA MER1_type 3 116 -62 1996 134 0 55 chr3 121167270 121167599 -96869559 - AluSx SINE Alu -1 311 1 265 182 234 26 chr3 121167604 121167681 -96869477 - L1MC4 LINE L1 -1 8041 7949 238 324 10 0 chr3 121167707 121167809 -96869349 + (TA)n Simple_repeat Simple_repeat 2 104 0 3172 257 83 21 chr3 121167853 121169095 -96868063 - L1MC4 LINE L1 -128 7680 6444 2041 181 5 24 chr3 121169542 121169913 -96867245 - MLT1A1 LTR MaLR 0 365 2 21 0 0 0 chr3 121170975 121170996 -96866162 + AT_rich Low_complexity Low_complexity 1 21 0 2201 101 0 23 chr3 121171325 121171633 -96865525 + AluSq SINE Alu 1 301 -12 254 311 56 0 chr3 121171747 121171837 -96865321 - MER63 DNA MER1_type -2 1058 964 * 398 202 165 9 chr3 121171829 121171938 -96865220 - MER63 DNA MER1_type -310 752 1 5042 222 15 19 chr3 121171989 121172666 -96864492 - L1P LINE L1 -1778 4368 3695 198 0 0 0 chr3 121172666 121172688 -96864470 + (TTG)n Simple_repeat Simple_repeat 3 24 0 5042 222 15 19 chr3 121172688 121173181 -96863977 - L1P LINE L1 -2451 3695 3202 * 6847 168 26 6 chr3 121173176 121173826 -96863332 + L1PA16 LINE L1 3886 4522 -1644 2273 146 68 29 chr3 121173826 121174238 -96862920 - MSTA LTR MaLR 0 428 1 6847 168 26 6 chr3 121174238 121175825 -96861333 + L1PA16 LINE L1 4522 6166 0 221 311 78 11 chr3 121176098 121176188 -96860970 - MIR3 SINE MIR -4 204 109 190 278 76 76 chr3 121176501 121176645 -96860513 + L2 LINE L2 3127 3270 -2 2470 60 0 22 chr3 121177374 121177689 -96859469 + AluY SINE Alu 1 308 -3 351 0 0 0 chr3 121177927 121177966 -96859192 + (TG)n Simple_repeat Simple_repeat 1 39 0 504 0 0 0 chr3 121178710 121178766 -96858392 + (CA)n Simple_repeat Simple_repeat 1 56 0 2483 63 7 0 chr3 121179524 121179825 -96857333 + AluY SINE Alu 1 303 -8 264 233 0 0 chr3 121179839 121179899 -96857259 + MER46C DNA MER2_type 96 155 -183 339 25 0 0 chr3 121180456 121180496 -96856662 + (GA)n Simple_repeat Simple_repeat 1 40 0 260 316 0 11 chr3 121181384 121181479 -96855679 - MIR3 SINE MIR -15 193 100 2027 149 16 0 chr3 121181519 121181827 -96855331 + AluSq SINE Alu 1 313 0 210 37 0 0 chr3 121181846 121181873 -96855285 + (CAAG)n Simple_repeat Simple_repeat 2 28 0 298 352 100 56 chr3 121182168 121182617 -96854541 - L2 LINE L2 0 3272 2804 899 167 0 0 chr3 121183152 121183284 -96853874 - FLAM_C SINE Alu 0 133 2 21 71 0 0 chr3 121183512 121183554 -96853604 + AT_rich Low_complexity Low_complexity 1 42 0 822 219 97 12 chr3 121183597 121183844 -96853314 + L1ME LINE L1 5258 5525 -641 298 262 28 21 chr3 121184071 121184212 -96852946 + C-rich Low_complexity Low_complexity 2 143 0 228 281 0 24 chr3 121185973 121186055 -96851103 - L1MC4 LINE L1 -1339 6703 6624 * 280 250 0 65 chr3 121185985 121186093 -96851065 + L1MC4 LINE L1 6614 6714 -1328 * 518 221 29 88 chr3 121186066 121186270 -96850888 - L1MC4 LINE L1 -1854 5954 5763 366 224 129 81 chr3 121186289 121186499 -96850659 - L1M4 LINE L1 -2978 3168 2949 22 0 0 0 chr3 121186819 121186841 -96850317 + AT_rich Low_complexity Low_complexity 1 22 0 772 119 8 0 chr3 121187091 121187209 -96849949 - L1MCa LINE L1 -6224 202 84 * 1447 203 46 0 chr3 121187208 121187320 -96849838 - L1MA9 LINE L1 -36 6276 6171 360 0 0 0 chr3 121187320 121187360 -96849798 + (TG)n Simple_repeat Simple_repeat 2 41 0 1447 203 46 0 chr3 121187360 121187552 -96849606 - L1MA9 LINE L1 -141 6171 5958 490 219 0 0 chr3 121187552 121187634 -96849524 - L1MCa LINE L1 -6329 97 16 229 303 30 26 chr3 121187721 121187826 -96849332 - MIR SINE MIR -71 137 31 291 306 0 0 chr3 121188446 121188518 -96848640 + L2 LINE L2 3201 3272 0 2195 114 7 0 chr3 121189055 121189352 -96847806 + AluSx SINE Alu 1 299 -13 446 247 28 72 chr3 121189901 121190058 -96847100 + MLT1J1 LTR MaLR 21 169 -277 429 257 46 26 chr3 121190144 121190296 -96846862 + MLT1J1 LTR MaLR 292 446 0 191 233 0 0 chr3 121190581 121190624 -96846534 + L2 LINE L2 3266 3308 -5 588 270 142 89 chr3 121190627 121190689 -96846469 + L3 LINE CR1 1014 1071 -506 2069 114 9 32 chr3 121190689 121191005 -96846153 - AluSg1 SINE Alu 0 309 1 588 270 142 89 chr3 121191005 121191450 -96845708 + L3 LINE CR1 1071 1548 -29 3325 121 2 9 chr3 121192618 121193146 -96844012 + LTR5 LTR ERVK 443 966 -3 2399 128 126 5 chr3 121193498 121193880 -96843278 - MSTA LTR MaLR 0 428 1 548 174 0 0 chr3 121193907 121193993 -96843165 + Tigger4(Zombi) DNA MER2_type 2 87 -2644 * 2058 131 96 35 chr3 121193990 121194102 -96843056 + Tigger4(Zombi) DNA MER2_type 2295 2399 -332 2202 98 0 11 chr3 121194102 121194426 -96842732 + AluY SINE Alu 1 321 0 2058 131 96 35 chr3 121194426 121194718 -96842440 + Tigger4(Zombi) DNA MER2_type 2399 2725 -6 199 367 79 33 chr3 121194778 121194993 -96842165 + L2 LINE L2 2582 2806 -508 264 350 40 0 chr3 121195009 121195109 -96842049 + MER5A DNA MER1_type 86 189 0 188 258 52 113 chr3 121195230 121195327 -96841831 + L2 LINE L2 2941 3031 -241 264 264 0 0 chr3 121195343 121195396 -96841762 - L2 LINE L2 -11 3261 3209 11381 11 0 1 chr3 121195568 121196811 -96840347 + HERVK LTR ERVK 5373 6614 -629 388 307 65 13 chr3 121197062 121197215 -96839943 - MIR3 SINE MIR -4 204 44 354 277 24 0 chr3 121198431 121198514 -96838644 + MER81 DNA DNA 2 86 -28 286 358 42 0 chr3 121198533 121198653 -96838505 - MIR SINE MIR -117 145 21 507 242 57 0 chr3 121198901 121199025 -96838133 - MER94 DNA DNA 0 134 4 238 296 14 0 chr3 121199166 121199237 -96837921 - MER63 DNA MER1_type 0 1060 989 359 186 10 0 chr3 121199342 121199444 -96837714 + CT-rich Low_complexity Low_complexity 1 103 0 2274 104 0 3 chr3 121199537 121199835 -96837323 - AluSg SINE Alu -12 298 2 507 282 20 7 chr3 121200334 121200483 -96836675 + MLT2F LTR ERVL 457 607 -56 584 122 0 0 chr3 121200483 121200565 -96836593 + AluS SINE Alu 223 304 -5 558 265 115 104 chr3 121201223 121201657 -96835501 - L3 LINE CR1 -29 1548 1110 2193 92 0 43 chr3 121201668 121201993 -96835165 + AluY SINE Alu 1 311 0 349 297 124 26 chr3 121202039 121202085 -96835073 + L1ME4a LINE L1 5818 5858 -263 2472 127 51 0 chr3 121202085 121202439 -96834719 - MER83C LTR ERV1 -1 372 1 349 297 124 26 chr3 121202439 121202658 -96834500 + L1ME4a LINE L1 5858 6109 -12 317 355 113 25 chr3 121204020 121204420 -96832738 + L2 LINE L2 707 1141 -2173 361 310 62 62 chr3 121204431 121204802 -96832356 + L2 LINE L2 1396 1766 -1548 700 297 77 15 chr3 121204931 121205372 -96831786 - LTR33 LTR ERVL -3 520 40 428 302 200 44 chr3 121205432 121205594 -96831564 + L2 LINE L2 1969 2104 -1210 210 37 0 0 chr3 121205594 121205621 -96831537 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 428 302 200 44 chr3 121205621 121205888 -96831270 + L2 LINE L2 2104 2465 -849 574 234 135 31 chr3 121206005 121206227 -96830931 + MLT1J2 LTR MaLR 1 245 -205 298 203 81 14 chr3 121206327 121206401 -96830757 - MIR SINE MIR -136 126 48 266 223 48 78 chr3 121206666 121206872 -96830286 + AluSx SINE Alu 18 217 -85 235 270 59 72 chr3 121207245 121207397 -96829761 - MIR3 SINE MIR -21 187 38 481 253 93 44 chr3 121207783 121207951 -96829207 + L2 LINE L2 3123 3302 -11 1246 217 73 14 chr3 121207951 121208064 -96829094 + AluJo SINE Alu 1 106 -206 273 57 0 0 chr3 121208064 121208099 -96829059 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1246 217 73 14 chr3 121208099 121208271 -96828887 + AluJo SINE Alu 106 303 -9 481 253 93 44 chr3 121208271 121208284 -96828874 + L2 LINE L2 3302 3313 0 406 330 24 14 chr3 121208763 121208975 -96828183 + L1ME LINE L1 5491 5704 -417 1104 110 35 6 chr3 121208977 121209150 -96828008 + L1MA2 LINE L1 6127 6304 0 27 49 0 0 chr3 121209150 121209191 -96827967 + AT_rich Low_complexity Low_complexity 1 41 0 640 247 53 32 chr3 121209289 121209479 -96827679 + MIR SINE MIR 69 262 0 625 199 44 2 chr3 121210278 121210493 -96826665 + ORSL DNA AcHobo 1 272 -3 988 208 42 9 chr3 121210658 121210874 -96826284 + MIR SINE MIR 5 227 -35 774 163 177 0 chr3 121212392 121212539 -96824619 + MER21B LTR ERV1 327 499 -364 201 267 186 0 chr3 121216508 121216594 -96820564 + L2 LINE L2 3167 3268 -4 588 251 184 0 chr3 121216732 121216939 -96820219 + MIR SINE MIR 18 262 0 947 231 14 27 chr3 121217282 121217503 -96819655 - MIR SINE MIR -32 230 13 743 117 67 8 chr3 121218429 121218549 -96818609 - L1MA3 LINE L1 0 6305 6179 2275 104 7 0 chr3 121219467 121219774 -96817384 + AluSx SINE Alu 1 309 -3 7527 49 11 11 chr3 121219951 121221453 -96815705 + SVA Other Other 1 1386 0 332 286 0 54 chr3 121221712 121221824 -96815334 - MLT1A1 LTR MaLR 0 365 260 351 220 25 25 chr3 121222100 121222218 -96814940 - L1 LINE L1 -3776 2370 2253 890 200 6 0 chr3 121222478 121222653 -96814505 - L1M4 LINE L1 -3600 2546 2371 2198 121 3 0 chr3 121222818 121223123 -96814035 + AluSx SINE Alu 1 306 -6 255 61 0 0 chr3 121223893 121223926 -96813232 + (CTG)n Simple_repeat Simple_repeat 3 35 0 28 48 0 0 chr3 121224494 121224536 -96812622 + AT_rich Low_complexity Low_complexity 1 42 0 199 204 0 0 chr3 121224839 121224883 -96812275 - L2 LINE L2 -1 3271 3228 1012 127 7 20 chr3 121224943 121225093 -96812065 + FRAM SINE Alu 11 158 -18 26 0 0 0 chr3 121225094 121225120 -96812038 + AT_rich Low_complexity Low_complexity 1 26 0 29 60 0 0 chr3 121225595 121225645 -96811513 + AT_rich Low_complexity Low_complexity 1 50 0 1854 166 7 0 chr3 121225954 121226249 -96810909 - AluJb SINE Alu -11 301 5 189 0 0 0 chr3 121226549 121226570 -96810588 + (TTCA)n Simple_repeat Simple_repeat 3 23 0 630 220 71 18 chr3 121227423 121227591 -96809567 - MER5B DNA MER1_type -1 177 1 28 0 0 0 chr3 121228042 121228070 -96809088 + AT_rich Low_complexity Low_complexity 1 28 0 2028 134 6 16 chr3 121228070 121228384 -96808774 - AluJb SINE Alu -1 311 1 476 216 58 29 chr3 121228544 121228559 -96808599 + L1M4 LINE L1 2517 2530 -3616 2215 118 0 0 chr3 121228559 121228863 -96808295 - AluY SINE Alu -7 304 1 476 216 58 29 chr3 121228863 121228986 -96808172 + L1M4 LINE L1 2530 2659 -3487 1709 184 0 10 chr3 121228989 121229288 -96807870 + AluJo SINE Alu 1 296 -16 199 337 54 9 chr3 121229438 121229550 -96807608 + MIR SINE MIR 38 159 -61 1968 113 14 24 chr3 121229790 121230081 -96807077 - AluSg SINE Alu -22 288 1 533 244 198 37 chr3 121230083 121230300 -96806858 + MLT1J2 LTR MaLR 37 288 -162 1790 177 3 3 chr3 121230464 121230764 -96806394 - AluSx SINE Alu -10 302 3 584 293 17 6 chr3 121230790 121230964 -96806194 + MIR SINE MIR 77 252 -10 2344 97 13 0 chr3 121231157 121231465 -96805693 - AluSx SINE Alu 0 312 1 2349 96 10 3 chr3 121231480 121231783 -96805375 - AluSp SINE Alu -8 305 1 275 230 90 40 chr3 121231784 121231884 -96805274 - MER46C DNA MER2_type -232 106 2 596 153 18 35 chr3 121232113 121232283 -96804875 + GA-rich Low_complexity Low_complexity 4 170 0 2249 92 0 3 chr3 121232548 121232840 -96804318 - AluSc SINE Alu -18 291 1 485 191 298 7 chr3 121232923 121233064 -96804094 + MER5A DNA MER1_type 7 188 -1 2485 84 3 0 chr3 121233578 121233887 -96803271 - AluSp SINE Alu -3 310 1 2215 122 3 0 chr3 121234062 121234366 -96802792 - AluSx SINE Alu -7 305 1 207 0 0 0 chr3 121235323 121235346 -96801812 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 207 0 0 0 chr3 121235563 121235586 -96801572 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 184 200 180 0 chr3 121235944 121235994 -96801164 - MIR SINE MIR -76 132 74 205 208 0 19 chr3 121236429 121236482 -96800676 + T-rich Low_complexity Low_complexity 3 54 0 284 277 15 0 chr3 121236614 121236679 -96800479 - L2 LINE L2 -2 3311 3246 382 313 60 13 chr3 121236684 121236834 -96800324 + MIR3 SINE MIR 44 200 -8 1803 180 0 3 chr3 121237137 121237442 -96799716 - AluJo SINE Alu -8 304 1 243 0 0 0 chr3 121237443 121237470 -96799688 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr3 121237473 121237494 -96799664 + AT_rich Low_complexity Low_complexity 1 21 0 291 240 29 87 chr3 121237717 121237821 -96799337 + L2 LINE L2 3206 3303 -10 1578 86 14 14 chr3 121238142 121238364 -96798794 + AluY SINE Alu 1 222 -89 1017 167 4 67 chr3 121238423 121238663 -96798495 + AluJb SINE Alu 85 309 -3 1595 165 21 92 chr3 121238674 121239099 -96798059 + L1MB8 LINE L1 5784 6178 0 330 254 109 27 chr3 121239529 121239639 -96797519 - MIR SINE MIR -124 138 20 540 249 153 68 chr3 121240926 121241395 -96795763 + MLT1J LTR MaLR 1 509 -2 301 281 70 53 chr3 121241404 121241518 -96795640 - L2 LINE L2 -4 3268 3153 1824 273 65 17 chr3 121242394 121243144 -96794014 - L1MC4a LINE L1 -1768 6040 5255 1111 150 23 0 chr3 121243226 121243399 -96793759 - AluJo SINE Alu -7 305 129 747 149 18 0 chr3 121243426 121243540 -96793618 - AluJo SINE Alu -176 136 21 1632 174 4 18 chr3 121245004 121245280 -96791878 - AluJo SINE Alu -30 282 11 1915 148 0 0 chr3 121245325 121245609 -96791549 - AluJb SINE Alu -25 287 4 420 339 48 26 chr3 121245657 121245884 -96791274 - L1ME LINE L1 -379 5742 5511 363 219 0 0 chr3 121246042 121246124 -96791034 - L1MB8 LINE L1 -313 5865 5784 1017 167 4 67 chr3 121246135 121246375 -96790783 - AluJb SINE Alu -3 309 85 1535 85 14 18 chr3 121246434 121246657 -96790501 - AluY SINE Alu -89 222 1 190 278 76 76 chr3 121247388 121247532 -96789626 - L2 LINE L2 -2 3270 3127 23 0 0 0 chr3 121247842 121247865 -96789293 + AT_rich Low_complexity Low_complexity 1 23 0 325 278 124 0 chr3 121248943 121249040 -96788118 - MIR SINE MIR -142 120 12 276 30 0 0 chr3 121250336 121250369 -96786789 + (TG)n Simple_repeat Simple_repeat 1 33 0 625 202 43 7 chr3 121250709 121250922 -96786236 + ORSL DNA AcHobo 1 272 -3 966 213 42 9 chr3 121251087 121251303 -96785855 + MIR SINE MIR 5 227 -35 197 245 0 20 chr3 121251891 121251940 -96785218 - MIR SINE MIR -122 140 93 2286 119 0 0 chr3 121252521 121252824 -96784334 - AluSx SINE Alu -9 303 1 1233 144 5 0 chr3 121252824 121253006 -96784152 - LTR26B LTR ERV1 -348 183 1 796 250 74 46 chr3 121253082 121253366 -96783792 + LTR33 LTR ERVL 38 329 -192 1558 198 106 10 chr3 121253505 121253920 -96783238 - LTR26 LTR ERV1 0 603 149 345 308 0 0 chr3 121254045 121254152 -96783006 + MIR SINE MIR 156 262 0 1499 115 16 53 chr3 121255012 121255256 -96781902 + AluJo SINE Alu 58 292 -20 879 171 33 0 chr3 121255256 121255408 -96781750 + L1MB7 LINE L1 6011 6167 -17 563 159 0 0 chr3 121255507 121255595 -96781563 - L1PB1 LINE L1 -14 6137 6050 188 75 0 50 chr3 121256082 121256122 -96781036 + (TTTTTG)n Simple_repeat Simple_repeat 5 42 0 784 179 0 0 chr3 121256133 121256250 -96780908 - FRAM SINE Alu -27 149 33 216 0 0 0 chr3 121257095 121257119 -96780039 + (T)n Simple_repeat Simple_repeat 1 24 0 1570 192 3 27 chr3 121258593 121258885 -96778273 + AluJb SINE Alu 1 285 -27 2042 101 3 21 chr3 121259276 121259564 -96777594 + AluSp SINE Alu 28 310 -3 6358 39 5 0 chr3 121259831 121260596 -96776562 - L1P LINE L1 -1101 5045 4277 391 290 57 16 chr3 121261210 121261334 -96775824 + L2 LINE L2 3142 3270 -2 688 235 0 15 chr3 121261408 121261544 -96775614 - MLT1A1 LTR MaLR 0 365 232 1754 203 33 52 chr3 121261546 121262028 -96775130 - MER4B LTR ERV1 0 610 138 2148 82 24 0 chr3 121262140 121262433 -96774725 - L1P LINE L1 -3442 2704 2405 3145 169 6 0 chr3 121262433 121262948 -96774210 - L1P LINE L1 -1899 4247 3730 1515 115 16 53 chr3 121263635 121263879 -96773279 + AluJo SINE Alu 58 292 -20 853 178 33 0 chr3 121263879 121264031 -96773127 + L1MB7 LINE L1 6011 6167 -17 2225 92 5 75 chr3 121264130 121264531 -96772627 - L1PB1 LINE L1 -14 6137 5765 23 0 0 0 chr3 121264849 121264872 -96772286 + AT_rich Low_complexity Low_complexity 1 23 0 239 308 0 33 chr3 121265208 121265325 -96771833 + CT-rich Low_complexity Low_complexity 4 176 0 1427 158 60 54 chr3 121265583 121265899 -96771259 + MER33 DNA MER1_type 5 322 -2 1615 184 3 17 chr3 121266084 121266383 -96770775 - AluJo SINE Alu -17 295 1 5561 60 3 0 chr3 121268004 121268670 -96768488 + L1PA8 LINE L1 5503 6170 -2 2023 211 83 25 chr3 121268673 121269238 -96767920 + L1MC4 LINE L1 7444 8041 -1 312 261 127 45 chr3 121270279 121270413 -96766745 - L3 LINE CR1 -140 1437 1293 206 283 185 11 chr3 121270483 121270575 -96766583 - L3 LINE CR1 -392 1185 1078 711 259 60 93 chr3 121271731 121272323 -96764835 - L2 LINE L2 0 3313 2646 12207 22 1 1 chr3 121272899 121274284 -96762874 - HERVK LTR ERVK -3222 4021 2637 933 204 58 43 chr3 121275681 121276064 -96761094 - Charlie2a DNA MER1_type -10 2852 734 295 287 43 17 chr3 121276063 121276178 -96760980 - Charlie2a DNA MER1_type -2388 474 357 * 216 158 0 0 chr3 121276372 121276410 -96760748 + CT-rich Low_complexity Low_complexity 2 39 0 1425 142 65 12 chr3 121276679 121276925 -96760233 + MER21A LTR ERV1 6 264 -667 1466 164 135 33 chr3 121276936 121277381 -96759777 + MER21A LTR ERV1 381 925 -6 1642 89 0 0 chr3 121277574 121277777 -96759381 - AluSq SINE Alu -110 203 1 3086 122 9 4 chr3 121277777 121278227 -96758931 + L1PA15 LINE L1 5581 6032 -133 232 71 0 0 chr3 121278260 121278288 -96758870 - U6 snRNA snRNA -79 28 1 2358 90 3 3 chr3 121278288 121278588 -96758570 - AluSx SINE Alu -12 300 1 263 375 21 0 chr3 121278593 121278689 -96758469 - L2 LINE L2 -16 3297 3200 419 276 41 0 chr3 121278960 121279058 -96758100 + L2 LINE L2 3162 3263 -9 1222 188 46 57 chr3 121279136 121279487 -96757671 + MER39 LTR ERV1 260 606 -101 2299 105 0 7 chr3 121280208 121280514 -96756644 - AluSx SINE Alu -8 304 1 1018 105 0 14 chr3 121280592 121280735 -96756423 - AluSq/x SINE Alu -171 141 1 243 270 10 20 chr3 121281009 121281109 -96756049 + CT-rich Low_complexity Low_complexity 2 100 0 288 227 0 0 chr3 121282402 121282490 -96754668 + (CA)n Simple_repeat Simple_repeat 2 89 0 1267 227 13 39 chr3 121283070 121283378 -96753780 + AluJo SINE Alu 2 301 -1 194 136 23 0 chr3 121283640 121283684 -96753474 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 202 277 15 0 chr3 121284631 121284639 -96752519 + (TATATG)n Simple_repeat Simple_repeat 2 8 -59 1950 144 20 7 chr3 121284639 121284945 -96752213 + AluSx SINE Alu 1 310 -2 202 277 15 0 chr3 121284945 121285001 -96752157 + (TATATG)n Simple_repeat Simple_repeat 8 67 0 226 224 0 0 chr3 121285004 121285053 -96752105 - L1MC4 LINE L1 -1334 6708 6660 222 105 0 0 chr3 121285875 121285913 -96751245 + (CA)n Simple_repeat Simple_repeat 2 39 0 1824 131 18 99 chr3 121286998 121287380 -96749778 + MLT1B LTR MaLR 35 385 -5 294 387 95 6 chr3 121287410 121287578 -96749580 - L3 LINE CR1 -1282 295 113 356 178 89 153 chr3 121287587 121287744 -96749414 - MIR SINE MIR 0 262 116 232 228 70 0 chr3 121287747 121287804 -96749354 - MIR SINE MIR -116 146 86 181 134 0 119 chr3 121288051 121288118 -96749040 + (G)n Simple_repeat Simple_repeat 1 59 0 480 209 64 0 chr3 121288668 121288778 -96748380 - L1MC4 LINE L1 0 8042 7926 222 227 47 20 chr3 121288826 121288976 -96748182 + (TA)n Simple_repeat Simple_repeat 2 155 0 1225 221 109 19 chr3 121289013 121289388 -96747770 - L1MC4 LINE L1 -150 7892 7484 24 0 0 0 chr3 121289681 121289705 -96747453 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 121290399 121290420 -96746738 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 121290464 121290488 -96746670 + AT_rich Low_complexity Low_complexity 1 24 0 2355 84 0 0 chr3 121290531 121290830 -96746328 + AluY SINE Alu 1 299 -12 784 197 46 83 chr3 121290920 121291138 -96746020 - MER63A DNA MER1_type 0 210 1 337 278 22 0 chr3 121291326 121291416 -96745742 + Charlie2 DNA MER1_type 59 150 -2632 384 253 110 13 chr3 121291696 121291850 -96745308 + MLT1H1 LTR MaLR 132 300 -249 571 201 174 40 chr3 121291977 121292201 -96744957 + MLT1H1 LTR MaLR 302 555 0 1701 223 31 33 chr3 121292208 121292657 -96744501 - MER39 LTR ERV1 0 707 260 253 310 50 10 chr3 121294038 121294138 -96743020 + MIR SINE MIR 43 146 -116 937 90 0 22 chr3 121296108 121296242 -96740916 - FLAM_C SINE Alu -1 132 2 2066 109 0 0 chr3 121296615 121296881 -96740277 + AluSx SINE Alu 17 282 -30 9176 58 5 26 chr3 121297255 121298562 -96738596 - HERVK LTR ERVK -2068 5175 3897 2274 107 0 3 chr3 121299387 121299685 -96737473 + AluSg SINE Alu 2 298 -12 378 159 0 0 chr3 121299778 121299866 -96737292 + GA-rich Low_complexity Low_complexity 1 88 0 249 203 63 13 chr3 121300301 121300380 -96736778 + MER69 DNA AcHobo 2387 2469 -57 985 162 7 0 chr3 121300520 121300674 -96736484 - FRAM SINE Alu -30 146 1 25 0 0 0 chr3 121301593 121301618 -96735540 + AT_rich Low_complexity Low_complexity 1 25 0 1891 147 17 3 chr3 121301624 121301917 -96735241 + AluSp SINE Alu 1 297 -16 314 140 0 0 chr3 121301937 121301987 -96735171 + L1PA7 LINE L1 6104 6153 -1 23 0 0 0 chr3 121302530 121302553 -96734605 + AT_rich Low_complexity Low_complexity 1 23 0 1155 109 171 19 chr3 121302998 121303209 -96733949 - MER2 DNA MER2_type -97 248 6 794 129 31 78 chr3 121304078 121304161 -96732997 + L1MEc LINE L1 741 826 -5570 1619 197 13 7 chr3 121304161 121304465 -96732693 + AluJo SINE Alu 1 306 -6 794 129 31 78 chr3 121304465 121304574 -96732584 + L1MEc LINE L1 826 924 -5472 1074 138 0 0 chr3 121305637 121305782 -96731376 + AluSq SINE Alu 1 145 -168 2369 64 7 0 chr3 121305783 121306066 -96731092 + AluY SINE Alu 1 285 -26 621 163 32 8 chr3 121306167 121306290 -96730868 + AluSq SINE Alu 134 259 -54 1124 240 67 72 chr3 121307627 121308216 -96728942 - L2 LINE L2 0 3313 2739 5431 54 1 0 chr3 121309011 121309679 -96727479 + L1PA8 LINE L1 5501 6169 -3 28 48 0 0 chr3 121309792 121309834 -96727324 + AT_rich Low_complexity Low_complexity 1 42 0 277 353 25 0 chr3 121310054 121310173 -96726985 - L3 LINE CR1 -8 1569 1448 238 196 0 0 chr3 121310341 121310397 -96726761 + T-rich Low_complexity Low_complexity 1 56 0 2766 180 12 4 chr3 121310835 121311336 -96725822 - L1MB5 LINE L1 0 6174 5670 221 244 211 24 chr3 121312738 121312861 -96724297 - MER5A DNA MER1_type -3 186 41 490 327 13 0 chr3 121312960 121313110 -96724048 + L2 LINE L2 3117 3268 -4 1522 186 0 87 chr3 121316110 121316443 -96720715 - AluJo SINE Alu -6 306 3 6274 82 20 5 chr3 121316502 121317677 -96719481 - L1PA14 LINE L1 0 6161 4987 788 198 80 0 chr3 121317964 121318151 -96719007 + L1MD3 LINE L1 7784 7985 -10 484 213 0 19 chr3 121318185 121318345 -96718813 + G-rich Low_complexity Low_complexity 5 161 0 283 289 89 80 chr3 121318386 121318611 -96718547 + MIR SINE MIR 23 249 -13 198 0 0 0 chr3 121318807 121318829 -96718329 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 2155 108 3 3 chr3 121318829 121319109 -96718049 - AluSx SINE Alu -32 280 1 403 274 183 10 chr3 121319259 121319467 -96717691 - MIR SINE MIR 0 262 19 234 317 72 28 chr3 121320992 121321172 -96715986 - L2 LINE L2 -870 2444 2257 967 259 51 3 chr3 121321429 121321742 -96715416 - L1ME3A LINE L1 -215 5955 5628 344 211 46 112 chr3 121322410 121322562 -96714596 - MIR SINE MIR -11 251 110 302 347 151 15 chr3 121323502 121323767 -96713391 + L2 LINE L2 2969 3269 -3 354 123 0 0 chr3 121324331 121324388 -96712770 + (CA)n Simple_repeat Simple_repeat 2 58 0 1319 201 13 96 chr3 121326206 121326604 -96710554 + MLT1A1 LTR MaLR 1 365 0 398 348 38 11 chr3 121326669 121326853 -96710305 - L2 LINE L2 -227 3086 2898 205 195 0 0 chr3 121327058 121327099 -96710059 + (TA)n Simple_repeat Simple_repeat 1 41 0 27 29 0 0 chr3 121327303 121327337 -96709821 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr3 121327444 121327467 -96709691 + AT_rich Low_complexity Low_complexity 1 23 0 5319 143 20 7 chr3 121327500 121328329 -96708829 - MER6 DNA MER2_type -6 859 20 256 275 88 0 chr3 121328514 121328605 -96708553 - MIR SINE MIR 0 262 164 422 250 39 58 chr3 121329536 121329692 -96707466 + MIR SINE MIR 34 186 -76 461 255 71 25 chr3 121329812 121330008 -96707150 - HAL1 LINE L1 -8 2499 2295 253 241 152 0 chr3 121330062 121330141 -96707017 + LTR16B LTR ERVL 1 91 -373 1173 191 92 31 chr3 121330173 121330466 -96706692 + LTR16B LTR ERVL 154 464 0 2007 293 66 25 chr3 121330624 121331512 -96705646 + HERV16 LTR ERVL 190 1114 -3882 519 264 109 10 chr3 121331568 121331769 -96705389 + HERV16 LTR ERVL 1227 1447 -3549 * 3147 276 71 19 chr3 121331765 121332809 -96704349 + HERV16 LTR ERVL 1573 2670 -2326 4605 156 19 3 chr3 121332809 121333540 -96703618 + Tigger1 DNA MER2_type 1 743 -1675 777 264 56 8 chr3 121333540 121333790 -96703368 + HAL1 LINE L1 1443 1704 -803 243 236 171 14 chr3 121333823 121333963 -96703195 - HAL1 LINE L1 -1102 1405 1244 252 221 67 58 chr3 121334461 121334565 -96702593 - MER34 LTR ERV1 0 542 438 1255 122 0 0 chr3 121334611 121334783 -96702375 + AluSg/x SINE Alu 129 300 -10 664 227 89 104 chr3 121334788 121335193 -96701965 - MER34C LTR ERV1 -160 425 27 319 302 44 71 chr3 121335387 121335639 -96701519 - HAL1 LINE L1 -2261 246 2 280 264 56 16 chr3 121335844 121335969 -96701189 + L2 LINE L2 2694 2823 -491 21 57 0 0 chr3 121336180 121336215 -96700943 + AT_rich Low_complexity Low_complexity 1 35 0 4583 109 24 3 chr3 121336215 121336883 -96700275 - L1PB1 LINE L1 -2 6149 5468 254 324 67 0 chr3 121337058 121337163 -96699995 + L2 LINE L2 3156 3267 -5 200 160 40 20 chr3 121337244 121337294 -96699864 + L2 LINE L2 3222 3272 0 197 288 135 27 chr3 121339304 121339415 -96697743 + L2 LINE L2 3140 3262 -10 271 278 0 56 chr3 121339642 121339768 -96697390 - MER5A DNA MER1_type -36 153 35 209 275 42 78 chr3 121339647 121339789 -96697369 + MER5A DNA MER1_type 51 187 -2 * 459 330 39 6 chr3 121340597 121340779 -96696379 - MIR SINE MIR -49 213 26 252 0 0 0 chr3 121341609 121341637 -96695521 + (T)n Simple_repeat Simple_repeat 1 28 0 1751 199 129 2 chr3 121341784 121342225 -96694933 - L1MD3 LINE L1 -11 7984 7488 1044 191 0 0 chr3 121342256 121342424 -96694734 - FRAM SINE Alu -12 164 1 4281 185 100 55 chr3 121342425 121343526 -96693632 - L1MC4a LINE L1 -490 7318 6168 310 189 68 0 chr3 121343518 121343592 -96693566 - L1ME1 LINE L1 -3 6163 6085 * 216 356 59 0 chr3 121343995 121344096 -96693062 - L2 LINE L2 -11 3261 3155 560 351 31 36 chr3 121344376 121344826 -96692332 - L2 LINE L2 -438 2876 2429 1988 279 83 26 chr3 121345093 121345673 -96691485 + MER45C DNA AcHobo 12 624 -329 4714 224 17 39 chr3 121346017 121347665 -96689493 - L1MB2 LINE L1 -1 6170 4563 786 206 45 20 chr3 121347692 121347891 -96689267 + L1MD2 LINE L1 6140 6343 -16 419 348 71 48 chr3 121348158 121348552 -96688606 - L2 LINE L2 -1 3271 2869 231 234 0 0 chr3 121349877 121349941 -96687217 + L1MC4 LINE L1 6640 6703 -1339 211 279 107 19 chr3 121349956 121350079 -96687079 - MIR SINE MIR -80 128 36 1890 125 14 7 chr3 121350110 121350405 -96686753 + AluY SINE Alu 1 297 -14 807 138 188 0 chr3 121350407 121350545 -96686613 + AluSg/x SINE Alu 134 297 -13 2356 92 0 7 chr3 121351221 121351527 -96685631 - AluSg SINE Alu -6 304 1 302 289 129 31 chr3 121351811 121352005 -96685153 + MIR SINE MIR 47 259 -3 718 246 93 34 chr3 121352241 121352594 -96684564 + L1ME4a LINE L1 5537 5910 -211 384 218 106 21 chr3 121352811 121352953 -96684205 + L1ME4a LINE L1 5964 6117 -4 2252 101 0 3 chr3 121353696 121354002 -96683156 + AluSx SINE Alu 1 305 -7 1892 147 7 3 chr3 121354911 121355196 -96681962 + AluSx SINE Alu 1 286 -26 25 102 0 0 chr3 121355894 121355982 -96681176 + GC_rich Low_complexity Low_complexity 1 88 0 225 221 0 0 chr3 121356443 121356511 -96680647 + (TG)n Simple_repeat Simple_repeat 2 69 0 1878 144 46 0 chr3 121361128 121361245 -96675913 + AluJb SINE Alu 1 111 -201 225 0 0 0 chr3 121361245 121361270 -96675888 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1878 144 46 0 chr3 121361270 121361437 -96675721 + AluJb SINE Alu 111 298 -14 576 285 43 9 chr3 121363233 121363449 -96673709 - MIR SINE MIR -5 257 36 354 265 20 10 chr3 121364915 121365017 -96672141 + MIR SINE MIR 4 106 -156 1034 276 126 16 chr3 121365352 121366175 -96670983 + L2 LINE L2 2370 3288 -25 253 244 0 51 chr3 121366524 121366602 -96670556 - L2 LINE L2 -2 3270 3197 204 40 0 0 chr3 121367136 121367161 -96669997 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2349 152 23 38 chr3 121367162 121367637 -96669521 - L1MC2 LINE L1 -9 6335 5868 1968 120 9 71 chr3 121368573 121368706 -96668452 + AluSx SINE Alu 2 142 -170 2316 75 55 0 chr3 121368706 121368999 -96668159 + AluY SINE Alu 1 309 -2 1968 120 9 71 chr3 121368999 121369190 -96667968 + AluSx SINE Alu 142 306 -6 343 173 12 25 chr3 121371665 121371746 -96665412 - L1MC5 LINE L1 -50 7911 7832 591 261 6 28 chr3 121373784 121373960 -96663198 - MER5B DNA MER1_type -4 174 3 389 270 72 13 chr3 121374393 121374545 -96662613 + MIR SINE MIR 90 250 -12 578 198 16 0 chr3 121375484 121375605 -96661553 - MER103 DNA DNA -31 135 13 487 241 9 0 chr3 121375730 121375838 -96661320 - L2 LINE L2 -1 3312 3204 270 56 0 0 chr3 121376450 121376486 -96660672 + (TG)n Simple_repeat Simple_repeat 1 36 0 432 0 0 0 chr3 121377043 121377091 -96660067 + (TG)n Simple_repeat Simple_repeat 2 49 0 207 292 45 34 chr3 121378467 121378556 -96658602 + L2 LINE L2 3158 3247 -25 3155 123 0 88 chr3 121379809 121380108 -96657050 + L1PB4 LINE L1 5496 5723 -433 360 111 0 0 chr3 121380108 121380162 -96656996 + (TG)n Simple_repeat Simple_repeat 2 55 0 3155 123 0 88 chr3 121380162 121380432 -96656726 + L1PB4 LINE L1 5723 6015 -141 807 127 12 69 chr3 121380562 121380735 -96656423 + L1PB4 LINE L1 5992 6154 -2 243 302 110 8 chr3 121380904 121381117 -96656041 - MIR SINE MIR -15 247 12 375 283 44 100 chr3 121381918 121382257 -96654901 - L2 LINE L2 -8 3264 2945 536 319 16 5 chr3 121382675 121382860 -96654298 + MIR SINE MIR 2 188 -74 1317 139 115 3 chr3 121383041 121383329 -96653829 + MER33 DNA MER1_type 5 324 0 208 217 0 0 chr3 121384559 121384605 -96652553 - L2 LINE L2 0 3272 3227 239 114 23 0 chr3 121385617 121385661 -96651497 + GA-rich Low_complexity Low_complexity 1 45 0 311 248 10 40 chr3 121385965 121386066 -96651092 + GA-rich Low_complexity Low_complexity 2 99 0 2087 230 124 20 chr3 121386874 121387525 -96649633 + Charlie7 DNA MER1_type 6 724 -1888 364 272 0 40 chr3 121387548 121387673 -96649485 + Charlie7 DNA MER1_type 2493 2612 0 325 184 48 68 chr3 121388104 121388207 -96648951 - MLT1J2 LTR MaLR -283 167 67 894 211 53 21 chr3 121388561 121388751 -96648407 - MER3 DNA MER1_type 0 209 14 305 284 0 28 chr3 121388983 121389092 -96648066 + MIR SINE MIR 16 121 -87 39 0 0 0 chr3 121389170 121389209 -96647949 + AT_rich Low_complexity Low_complexity 1 39 0 251 51 0 26 chr3 121389257 121389296 -96647862 - L1MA9 LINE L1 -39 6273 6236 792 150 0 23 chr3 121389299 121389432 -96647726 - FRAM SINE Alu -12 164 35 31 26 0 0 chr3 121390657 121390695 -96646463 + AT_rich Low_complexity Low_complexity 1 38 0 237 196 0 0 chr3 121391195 121391246 -96645912 + CT-rich Low_complexity Low_complexity 3 53 0 512 233 114 25 chr3 121391578 121391780 -96645378 + MIR SINE MIR 7 226 -36 363 274 146 36 chr3 121394182 121394401 -96642757 - MIR SINE MIR 0 262 20 194 256 0 0 chr3 121395735 121395778 -96641380 + L3 LINE CR1 1525 1567 -10 195 42 0 0 chr3 121396402 121396426 -96640732 + (CAT)n Simple_repeat Simple_repeat 3 26 0 232 276 196 12 chr3 121397118 121397281 -96639877 - L1ME4a LINE L1 -79 6042 5850 868 185 128 5 chr3 121397370 121397565 -96639593 + AluJb SINE Alu 13 231 -81 304 172 261 75 chr3 121397623 121397757 -96639401 - L1ME3 LINE L1 -15 6147 5989 234 263 0 0 chr3 121397815 121397872 -96639286 - L1ME4a LINE L1 -396 5766 5710 252 298 53 26 chr3 121399334 121399485 -96637673 - MER117 DNA MER1_type -41 156 2 21 82 0 0 chr3 121399503 121399552 -96637606 + AT_rich Low_complexity Low_complexity 1 49 0 320 273 80 53 chr3 121399976 121400126 -96637032 + MIR SINE MIR 48 201 -61 284 91 91 0 chr3 121400763 121400807 -96636351 - MLT2B1 LTR ERVL 0 520 473 181 148 19 37 chr3 121400807 121400861 -96636297 + (TATATG)n Simple_repeat Simple_repeat 3 55 0 255 197 0 30 chr3 121403124 121403190 -96633968 + MER116 DNA Mariner 7 70 -10 185 258 65 16 chr3 121403281 121403343 -96633815 + L2 LINE L2 3249 3313 0 392 288 130 6 chr3 121403387 121403564 -96633594 - MIR SINE MIR -44 218 20 360 237 32 11 chr3 121403889 121403982 -96633176 + MLT1L LTR MaLR 508 602 -13 259 341 0 11 chr3 121404182 121404273 -96632885 + MIR SINE MIR 34 123 -139 735 228 22 0 chr3 121404679 121404859 -96632299 - MER5A DNA MER1_type 0 189 6 712 173 43 7 chr3 121406117 121406256 -96630902 - AluJo SINE Alu -82 230 87 1381 213 39 20 chr3 121406761 121407118 -96630040 - L1PB4 LINE L1 -12 6144 5781 529 147 2 107 chr3 121407158 121407325 -96629833 - L1PB4 LINE L1 -701 5462 5319 313 308 107 9 chr3 121408102 121408337 -96628821 + L2 LINE L2 2755 3001 -312 3290 153 16 12 chr3 121409302 121409870 -96627288 + L1MB3 LINE L1 5614 6183 0 6889 118 11 18 chr3 121409893 121410597 -96626561 + L1MA3 LINE L1 5121 5815 -490 1783 164 3 11 chr3 121410597 121410884 -96626274 + AluJo SINE Alu 1 285 -27 6889 118 11 18 chr3 121410884 121411372 -96625786 + L1MA3 LINE L1 5815 6305 0 1132 283 71 32 chr3 121411507 121412126 -96625032 + L1ME2 LINE L1 5298 5940 -224 1217 266 62 71 chr3 121412401 121412485 -96624673 + L1MC/D LINE L1 4964 5047 -1510 3645 132 35 29 chr3 121412485 121413152 -96624006 - L1MA8 LINE L1 -2 6289 5619 1217 266 62 71 chr3 121413152 121413333 -96623825 + L1MC/D LINE L1 5047 5228 -1329 2136 91 22 41 chr3 121413333 121413651 -96623507 + AluSx SINE Alu 1 312 0 1217 266 62 71 chr3 121413651 121414240 -96622918 + L1MC/D LINE L1 5228 5814 -743 447 260 0 10 chr3 121416585 121416689 -96620469 + Charlie7 DNA MER1_type 3 105 -2507 413 180 87 55 chr3 121416668 121416851 -96620307 + Charlie7 DNA MER1_type 2424 2612 0 * 364 281 50 25 chr3 121417363 121417523 -96619635 - MIR SINE MIR 0 262 99 183 343 14 14 chr3 121417639 121417712 -96619446 + MIR SINE MIR 34 106 -102 22 56 0 0 chr3 121417833 121417869 -96619289 + AT_rich Low_complexity Low_complexity 1 36 0 706 263 75 16 chr3 121418272 121418527 -96618631 + L2 LINE L2 3044 3313 0 2145 104 0 36 chr3 121418536 121418843 -96618315 + AluY SINE Alu 1 296 -15 1874 159 0 46 chr3 121419427 121419754 -96617404 - AluJb SINE Alu 0 312 1 471 252 47 0 chr3 121419775 121419902 -96617256 + MER46C DNA MER2_type 103 235 -103 1915 184 69 55 chr3 121419902 121420354 -96616804 + MER31B LTR ERV1 1 458 -8 357 179 0 15 chr3 121420381 121420448 -96616710 + MER46C DNA MER2_type 272 337 -1 9947 209 69 30 chr3 121420527 121421462 -96615696 + L1MDa LINE L1 71 969 -5571 2229 165 33 24 chr3 121421462 121421886 -96615272 + MSTA LTR MaLR 1 428 0 9947 209 69 30 chr3 121421886 121422111 -96615047 + L1MDa LINE L1 969 1184 -5356 2328 118 8 11 chr3 121422111 121422467 -96614691 + THE1A LTR MaLR 1 355 0 11576 80 15 26 chr3 121422467 121422894 -96614264 + THE1A-int LTR MaLR 1 431 -1149 192 40 0 0 chr3 121422894 121422919 -96614239 + (TG)n Simple_repeat Simple_repeat 2 26 0 2118 101 7 39 chr3 121422919 121423227 -96613931 - AluY SINE Alu -13 298 1 11576 80 15 26 chr3 121423227 121424396 -96612762 + THE1A-int LTR MaLR 429 1580 0 2452 110 8 8 chr3 121424396 121424751 -96612407 + THE1A LTR MaLR 1 355 0 9947 209 69 30 chr3 121424751 121426473 -96610685 + L1MDa LINE L1 1184 3111 -3429 2166 171 8 0 chr3 121426473 121426835 -96610323 + MER47A DNA MER2_type 1 365 -1 9947 209 69 30 chr3 121426835 121427421 -96609737 + L1MDa LINE L1 3111 3673 -2867 2261 121 0 0 chr3 121427431 121427728 -96609430 + AluSx SINE Alu 1 297 -15 1071 324 36 29 chr3 121427745 121428328 -96608830 + L1PA13 LINE L1 788 1374 -6200 395 260 0 20 chr3 121428474 121428574 -96608584 + L1PA13 LINE L1 2085 2182 -5399 4504 215 117 38 chr3 121428908 121431048 -96606110 + L1PA13 LINE L1 2571 5037 -2547 270 0 0 0 chr3 121431070 121431100 -96606058 + (TC)n Simple_repeat Simple_repeat 1 30 0 391 131 24 42 chr3 121431249 121431417 -96605741 + (TA)n Simple_repeat Simple_repeat 2 166 0 329 115 13 90 chr3 121431434 121431512 -96605646 - MLT2A1 LTR ERVL -41 403 332 1430 110 50 0 chr3 121432212 121432431 -96604727 - MER30 DNA MER1_type 0 230 1 552 255 62 12 chr3 121432710 121432871 -96604287 + L1MD2 LINE L1 5975 6143 -216 602 213 80 0 chr3 121432874 121433024 -96604134 + L1MD2 LINE L1 6196 6357 -2 2268 143 63 48 chr3 121433035 121433241 -96603917 - MSTB1 LTR MaLR -2 430 228 1770 130 53 18 chr3 121433241 121433526 -96603632 + AluJb SINE Alu 4 298 -14 2268 143 63 48 chr3 121433526 121433732 -96603426 - MSTB1 LTR MaLR -204 228 12 6669 139 20 47 chr3 121434340 121435782 -96601376 - L1MA3 LINE L1 0 6305 4918 205 329 49 0 chr3 121435789 121435871 -96601287 - L2 LINE L2 -38 3234 3149 862 84 0 8 chr3 121436829 121436948 -96600210 - AluY SINE Alu -18 293 176 1533 171 49 21 chr3 121437706 121437992 -96599166 - AluJo SINE Alu -18 294 1 673 170 0 0 chr3 121438536 121438636 -96598522 + AluSg/x SINE Alu 194 293 -19 380 170 113 47 chr3 121438689 121438795 -96598363 - L1ME4a LINE L1 -3 6118 6006 498 198 102 19 chr3 121439418 121439587 -96597571 - MIR SINE MIR -67 141 6 216 219 0 0 chr3 121439643 121439684 -96597474 + (TTAG)n Simple_repeat Simple_repeat 2 42 0 600 236 91 18 chr3 121440626 121440791 -96596367 + MER69A DNA AcHobo 1 177 0 464 269 147 20 chr3 121446311 121446508 -96590650 - MIR SINE MIR -12 250 29 720 327 24 0 chr3 121446541 121446752 -96590406 + MIR SINE MIR 44 259 -3 189 325 25 25 chr3 121450630 121450710 -96586448 - MIR SINE MIR -113 95 16 180 337 65 11 chr3 121450735 121450827 -96586331 - MIR SINE MIR -60 202 106 341 339 129 31 chr3 121451398 121451977 -96585181 - L2 LINE L2 -744 2570 1935 442 206 176 0 chr3 121452594 121452730 -96584428 - MLT2C2 LTR ERVL -192 272 113 255 103 0 0 chr3 121452725 121452764 -96584394 - MLT2D LTR ERVL -375 39 1 * 22 0 0 0 chr3 121453216 121453238 -96583920 + AT_rich Low_complexity Low_complexity 1 22 0 290 313 189 36 chr3 121455626 121455875 -96581283 + L2 LINE L2 2969 3255 -17 1961 108 0 155 chr3 121456192 121456352 -96580806 + MER1B DNA MER1_type 1 64 -2646 782 21 10 0 chr3 121456352 121456448 -96580710 + (CAGAA)n Simple_repeat Simple_repeat 2 98 0 1961 108 0 155 chr3 121456448 121456686 -96580472 + MER1B DNA MER1_type 64 337 0 198 295 139 49 chr3 121458024 121458146 -96579012 + L2 LINE L2 3138 3270 -2 705 239 98 6 chr3 121461406 121461569 -96575589 - MER45A DNA AcHobo 0 178 1 817 83 0 0 chr3 121461920 121462028 -96575130 - L1MA1 LINE L1 -10 6292 6185 272 47 0 47 chr3 121462325 121462368 -96574790 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 286 343 49 0 chr3 121462368 121462470 -96574688 - L2 LINE L2 -17 3255 3149 866 84 0 8 chr3 121463427 121463546 -96573612 - AluY SINE Alu -18 293 176 1646 175 49 11 chr3 121464304 121464590 -96572568 - AluJo SINE Alu -15 297 1 680 172 0 0 chr3 121465134 121465233 -96571925 + AluSg/x SINE Alu 192 290 -20 353 170 113 47 chr3 121465285 121465391 -96571767 - L1ME4a LINE L1 -3 6118 6006 562 198 102 19 chr3 121466015 121466184 -96570974 - MIR SINE MIR -67 141 6 216 219 0 0 chr3 121466240 121466281 -96570877 + (TTAG)n Simple_repeat Simple_repeat 2 42 0 599 241 84 18 chr3 121467225 121467391 -96569767 + MER69A DNA AcHobo 1 177 0 209 346 176 0 chr3 121467870 121468023 -96569135 - MIR SINE MIR -62 200 21 464 269 147 20 chr3 121472911 121473108 -96564050 - MIR SINE MIR -12 250 29 720 327 24 0 chr3 121473141 121473352 -96563806 + MIR SINE MIR 44 259 -3 189 325 25 25 chr3 121477231 121477311 -96559847 - MIR SINE MIR -113 95 16 180 337 65 11 chr3 121477336 121477428 -96559730 - MIR SINE MIR -60 202 106 330 341 128 31 chr3 121477999 121478579 -96558579 - L2 LINE L2 -744 2570 1935 23 33 0 0 chr3 121482581 121482611 -96554547 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr3 121484062 121484085 -96553073 + AT_rich Low_complexity Low_complexity 1 23 0 322 230 124 5 chr3 121485110 121485233 -96551925 - MIR3 SINE MIR -1 207 70 1432 190 116 67 chr3 121485292 121485804 -96551354 + MLT1F LTR MaLR 1 499 -6 242 250 0 0 chr3 121486324 121486376 -96550782 + LTR30 LTR ERV1 1 52 -670 1854 156 129 58 chr3 121486376 121487127 -96550031 + pTR5 LTR ERV1 57 2032 -406 312 244 11 0 chr3 121487128 121487218 -96549940 + LTR30 LTR ERV1 552 642 -80 746 108 19 25 chr3 121487218 121487365 -96549793 + LTR12 LTR ERV1 303 714 0 * 12023 102 19 10 chr3 121487365 121489114 -96548044 + HERV9 LTR ERV1 79 1844 -6555 1222 58 39 34 chr3 121489233 121489439 -96547719 - MLT2A1 LTR ERVL -237 207 1 5713 212 14 14 chr3 121489439 121490766 -96546392 + L1M4 LINE L1 3612 4938 -1208 4648 122 49 11 chr3 121490766 121491245 -96545913 + L1PA16 LINE L1 5201 5720 -446 2534 111 11 24 chr3 121491245 121491625 -96545533 - THE1C LTR MaLR 0 375 1 4648 122 49 11 chr3 121491625 121491980 -96545178 + L1PA16 LINE L1 5720 6060 -106 29 0 0 0 chr3 121492202 121492231 -96544927 + GC_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr3 121492255 121492280 -96544878 + GC_rich Low_complexity Low_complexity 1 25 0 1055 102 0 7 chr3 121492453 121492600 -96544558 - AluY SINE Alu -7 304 159 1187 250 44 5 chr3 121492617 121493005 -96544153 + L1M4 LINE L1 4528 4930 -1216 913 170 42 5 chr3 121492982 121493194 -96543964 + L1M4 LINE L1 5174 5393 -753 * 312 120 0 0 chr3 121495567 121495617 -96541541 + (A)n Simple_repeat Simple_repeat 1 50 0 359 288 20 48 chr3 121495748 121495894 -96541264 + L2 LINE L2 3172 3313 0 419 286 18 9 chr3 121498812 121498924 -96538234 - MIR SINE MIR -63 145 33 449 205 53 86 chr3 121499262 121499413 -96537745 - MER91B DNA MER1_type -27 163 18 549 262 43 0 chr3 121500040 121500181 -96536977 + MIR3 SINE MIR 62 208 0 2224 110 3 0 chr3 121500825 121501117 -96536041 - AluSc SINE Alu -14 295 3 309 157 72 0 chr3 121501891 121501974 -96535184 + GA-rich Low_complexity Low_complexity 3 91 0 831 282 53 63 chr3 121501978 121502502 -96534656 + L1MEc LINE L1 362 880 -5841 2189 256 49 11 chr3 121502564 121503482 -96533676 + L1MEc LINE L1 2990 3942 -2598 811 171 22 52 chr3 121503486 121503753 -96533405 + L1MEc LINE L1 2441 2741 -3890 3173 239 55 44 chr3 121503754 121504848 -96532310 + L1MEc LINE L1 4444 5557 -983 1958 155 23 0 chr3 121504848 121505152 -96532006 + AluSx SINE Alu 1 311 -1 3173 239 55 44 chr3 121505152 121505386 -96531772 + L1MEc LINE L1 5557 5787 -753 10033 153 54 9 chr3 121505428 121507244 -96529914 - HUERS-P2 LTR ERV1 -978 2110 213 383 183 0 24 chr3 121507270 121507352 -96529806 - HUERS-P2 LTR ERV1 -2961 127 48 4282 115 70 56 chr3 121507391 121508163 -96528995 - LTR1 LTR ERV1 -2 783 1 277 250 37 0 chr3 121508235 121508343 -96528815 + L1M4 LINE L1 4983 5094 -1052 1785 159 0 0 chr3 121508925 121509232 -96527926 + AluSx SINE Alu 9 315 0 2114 151 0 3 chr3 121509267 121509578 -96527580 - AluSx SINE Alu -2 310 1 1140 247 74 6 chr3 121509580 121510100 -96527058 - L1 LINE L1 -3542 2840 2271 9873 152 25 5 chr3 121510263 121511917 -96525241 + L1M1 LINE L1 16 1702 -5863 10455 175 28 5 chr3 121511921 121514419 -96522739 + L1M1 LINE L1 3288 5848 -1717 244 186 50 11 chr3 121516109 121516300 -96520858 + (TA)n Simple_repeat Simple_repeat 1 198 0 6625 98 6 4 chr3 121516965 121517945 -96519213 + Harlequin LTR ERV1 1991 2972 -5427 4547 113 24 67 chr3 121517944 121519156 -96518002 + Harlequin LTR ERV1 703 4978 -3421 * 1079 64 6 0 chr3 121519162 121519318 -96517840 + Harlequin LTR ERV1 1584 1740 -5156 * 5325 94 10 0 chr3 121519315 121520082 -96517076 + Harlequin LTR ERV1 7625 8399 0 248 231 0 0 chr3 121520082 121520134 -96517024 + LTR30 LTR ERV1 1 52 -670 1111 60 280 0 chr3 121520134 121520316 -96516842 + LTR12 LTR ERV1 53 285 -429 335 194 0 0 chr3 121520317 121520389 -96516769 + LTR30 LTR ERV1 553 624 -98 728 143 29 9 chr3 121520389 121520521 -96516637 + LTR12 LTR ERV1 175 480 -234 338 274 43 46 chr3 121520546 121520891 -96516267 + L1M2 LINE L1 5152 5497 -747 405 0 0 0 chr3 121521466 121521511 -96515647 + (CA)n Simple_repeat Simple_repeat 2 46 0 1463 213 47 29 chr3 121521772 121522180 -96514978 + L1ME3 LINE L1 349 763 -5633 915 147 54 5 chr3 121522181 121522365 -96514793 + L1PBa LINE L1 3 195 -6668 * 3601 116 223 18 chr3 121522350 121523072 -96514086 + L1PBa LINE L1 620 1489 -5374 1243 52 12 17 chr3 121523072 121523244 -96513914 + L1PB1 LINE L1 5981 6151 0 2119 100 0 7 chr3 121523251 121523530 -96513628 + AluSg1 SINE Alu 1 277 -32 1101 27 8 0 chr3 121523530 121523793 -96513365 + L1PA6 LINE L1 5793 6152 -2 539 214 77 25 chr3 121523799 121523995 -96513163 + L1ME3 LINE L1 738 943 -5453 32 26 0 0 chr3 121524031 121524070 -96513088 + AT_rich Low_complexity Low_complexity 1 39 0 328 233 128 30 chr3 121524088 121524221 -96512937 + HAL1 LINE L1 2226 2371 -136 31 0 0 0 chr3 121524256 121524287 -96512871 + AT_rich Low_complexity Low_complexity 1 31 0 1207 280 147 2 chr3 121524332 121524890 -96512268 + L1ME3 LINE L1 4643 5281 -934 246 128 0 0 chr3 121524911 121524950 -96512208 + (CA)n Simple_repeat Simple_repeat 2 40 0 2463 229 103 26 chr3 121525017 121525232 -96511926 + L1ME3 LINE L1 5323 5520 -711 2077 155 42 65 chr3 121525232 121525710 -96511448 + MLT1C LTR MaLR 1 467 0 2463 229 103 26 chr3 121525710 121526330 -96510828 + L1ME3 LINE L1 5520 6222 -9 29 84 0 0 chr3 121526468 121526539 -96510619 + AT_rich Low_complexity Low_complexity 1 71 0 298 279 12 29 chr3 121528880 121529052 -96508106 + T-rich Low_complexity Low_complexity 5 173 0 21 36 0 0 chr3 121529479 121529507 -96507651 + AT_rich Low_complexity Low_complexity 1 28 0 39 22 0 0 chr3 121529527 121529573 -96507585 + AT_rich Low_complexity Low_complexity 1 46 0 25 65 0 0 chr3 121529604 121529650 -96507508 + AT_rich Low_complexity Low_complexity 1 46 0 28 29 0 0 chr3 121532550 121532585 -96504573 + AT_rich Low_complexity Low_complexity 1 35 0 2329 76 0 13 chr3 121532607 121532911 -96504247 - AluY SINE Alu -11 300 1 21 36 0 0 chr3 121535645 121535673 -96501485 + AT_rich Low_complexity Low_complexity 1 28 0 634 227 29 17 chr3 121535828 121536000 -96501158 - MER5B DNA MER1_type 0 178 5 988 167 11 0 chr3 121537520 121537694 -96499464 + MLT1B LTR MaLR 1 176 -214 35822 87 8 8 chr3 121537709 121543854 -96493304 + L1PA6 LINE L1 11 6153 -1 1094 150 13 43 chr3 121543855 121544089 -96493069 + MLT1B LTR MaLR 164 390 0 342 0 0 0 chr3 121545476 121545514 -96491644 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 367 77 123 0 chr3 121545514 121545579 -96491579 - L1PA3 LINE L1 -13 6142 6070 2286 171 25 54 chr3 121545655 121545746 -96491412 + L1MB2 LINE L1 5663 5755 -416 1609 216 0 3 chr3 121545746 121546047 -96491111 - AluSx SINE Alu -12 300 1 2286 171 25 54 chr3 121546047 121546476 -96490682 + L1MB2 LINE L1 5755 6168 -3 478 322 22 35 chr3 121546496 121546726 -96490432 + L1MEd LINE L1 1074 1300 -4905 760 170 39 26 chr3 121546784 121546942 -96490216 + AluJb SINE Alu 138 292 -20 456 256 68 40 chr3 121546961 121547285 -96489873 + L1MEd LINE L1 2068 2400 -3996 2031 302 179 16 chr3 121547290 121548422 -96488736 - L2 LINE L2 -853 2461 1145 751 316 113 0 chr3 121548481 121548693 -96488465 + MIR SINE MIR 2 237 -25 323 161 16 0 chr3 121548696 121548758 -96488400 + MER53 DNA DNA 3 65 -124 234 119 18 174 chr3 121548710 121548771 -96488387 - MER53 DNA DNA -7 182 144 * 2144 105 3 3 chr3 121548771 121549056 -96488102 - AluSc SINE Alu -24 285 1 234 119 18 174 chr3 121549056 121549103 -96488055 - MER53 DNA DNA -45 144 91 459 175 0 0 chr3 121549148 121549228 -96487930 - FLAM_A SINE Alu -10 132 53 247 297 56 22 chr3 121549827 121549996 -96487162 + MLT1L LTR MaLR 1 180 -331 291 114 0 0 chr3 121550498 121550542 -96486616 + (TCC)n Simple_repeat Simple_repeat 3 46 0 1168 73 0 73 chr3 121551142 121551333 -96485825 - L1PA3 LINE L1 0 6155 5979 964 182 0 0 chr3 121551541 121551700 -96485458 - FRAM SINE Alu -7 159 1 217 313 50 25 chr3 121551862 121551942 -96485216 + L2 LINE L2 3183 3264 -49 22 0 0 0 chr3 121552229 121552251 -96484907 + AT_rich Low_complexity Low_complexity 1 22 0 22 106 0 0 chr3 121552317 121552402 -96484756 + AT_rich Low_complexity Low_complexity 1 85 0 433 359 68 15 chr3 121552566 121552831 -96484327 + L2 LINE L2 2071 2349 -965 427 286 19 39 chr3 121552844 121552998 -96484160 - L2 LINE L2 -5 3308 3158 23 33 0 0 chr3 121553090 121553120 -96484038 + AT_rich Low_complexity Low_complexity 1 30 0 1588 341 79 54 chr3 121553214 121554289 -96482869 - L2 LINE L2 -1120 2194 1147 1705 168 47 41 chr3 121554289 121554652 -96482506 - MLT1A1 LTR MaLR 0 365 1 1588 341 79 54 chr3 121554652 121554870 -96482288 - L2 LINE L2 -2167 1147 936 2417 35 0 0 chr3 121554870 121555154 -96482004 - L1PA7 LINE L1 -13 6141 5858 2246 106 0 7 chr3 121555164 121555466 -96481692 - AluY SINE Alu -11 300 1 1588 341 79 54 chr3 121555466 121555502 -96481656 - L2 LINE L2 -2386 928 894 2015 152 23 38 chr3 121555502 121555898 -96481260 + MLT1B LTR MaLR 1 390 0 1588 341 79 54 chr3 121555898 121556024 -96481134 - L2 LINE L2 -2420 894 773 2600 111 0 11 chr3 121556024 121556392 -96480766 + THE1B LTR MaLR 1 364 0 1588 341 79 54 chr3 121556392 121556557 -96480601 - L2 LINE L2 -2541 773 519 1566 250 67 20 chr3 121556611 121556743 -96480415 - L1 LINE L1 -3414 2968 2844 1648 139 21 35 chr3 121556743 121557053 -96480105 - AluSx SINE Alu 0 306 1 1566 250 67 20 chr3 121557053 121557575 -96479583 - L1 LINE L1 -3538 2844 2271 10484 152 25 5 chr3 121557728 121559391 -96477767 + L1MA3 LINE L1 8 1702 -5863 15686 156 23 21 chr3 121559395 121563818 -96473340 + L1MA3 LINE L1 3288 7724 0 2198 148 63 48 chr3 121564427 121564633 -96472525 + MSTB1 LTR MaLR 12 214 -218 1747 130 53 18 chr3 121564633 121564918 -96472240 - AluJb SINE Alu -14 298 4 2198 148 63 48 chr3 121564918 121565124 -96472034 + MSTB1 LTR MaLR 214 430 -2 584 214 62 0 chr3 121565140 121565285 -96471873 - L1MD2 LINE L1 -10 6349 6196 544 255 62 12 chr3 121565288 121565449 -96471709 - L1MD2 LINE L1 -216 6143 5975 1408 110 50 0 chr3 121565728 121565947 -96471211 + MER30 DNA MER1_type 1 230 0 181 338 70 14 chr3 121566243 121566314 -96470844 + L2 LINE L2 3235 3309 -4 520 293 110 104 chr3 121568049 121569075 -96468083 - L2 LINE L2 -12 3260 2239 343 272 151 48 chr3 121569208 121569480 -96467678 - L2 LINE L2 -5 3308 3009 724 257 4 68 chr3 121569902 121569920 -96467238 + L2 LINE L2 3080 3098 -215 2346 200 60 26 chr3 121569920 121570489 -96466669 + MLT1G LTR MaLR 3 590 0 724 257 4 68 chr3 121570489 121570719 -96466439 + L2 LINE L2 3098 3312 -1 24 53 0 0 chr3 121571121 121571159 -96465999 + AT_rich Low_complexity Low_complexity 1 38 0 478 286 32 42 chr3 121571889 121572078 -96465080 + MIR SINE MIR 20 206 -56 21 57 0 0 chr3 121572504 121572539 -96464619 + AT_rich Low_complexity Low_complexity 1 35 0 302 326 53 16 chr3 121573951 121574138 -96463020 + L3 LINE CR1 692 885 -692 257 235 59 12 chr3 121575238 121575323 -96461835 - L1ME4a LINE L1 -59 6062 5974 393 236 47 9 chr3 121575661 121575767 -96461391 - MIR SINE MIR -6 256 147 229 328 0 0 chr3 121575811 121575869 -96461289 + MER91B DNA MER1_type 139 196 0 467 258 133 0 chr3 121575869 121575989 -96461169 - MIR SINE MIR -106 156 21 309 297 0 0 chr3 121576013 121576104 -96461054 + MER103 DNA DNA 29 119 -47 2276 39 0 0 chr3 121577482 121577741 -96459417 + AluY SINE Alu 38 296 -15 453 240 13 87 chr3 121578256 121578389 -96458769 - L2 LINE L2 0 3313 3191 936 207 34 29 chr3 121578389 121578597 -96458561 - MER3 DNA MER1_type 0 209 1 453 240 13 87 chr3 121578597 121578613 -96458545 - L2 LINE L2 -122 3191 3175 574 247 167 0 chr3 121578632 121578794 -96458364 + MIR SINE MIR 72 260 -2 211 299 60 0 chr3 121579397 121579464 -96457694 + MIR SINE MIR 4 74 -188 2299 93 7 0 chr3 121579685 121579985 -96457173 + AluSp SINE Alu 1 302 -11 21 36 0 0 chr3 121580061 121580089 -96457069 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr3 121580109 121580132 -96457026 + (A)n Simple_repeat Simple_repeat 1 23 0 3401 137 9 9 chr3 121580712 121581267 -96455891 + MER41B LTR ERV1 1 555 -80 6070 55 21 1 chr3 121581267 121582061 -96455097 - L1PA5 LINE L1 -15 6139 5330 8986 64 15 1 chr3 121582200 121584016 -96453142 - L1PA5 LINE L1 -51 6103 4264 1997 52 8 0 chr3 121584014 121584263 -96452895 + L1PA5 LINE L1 4002 4252 -1894 * 585 168 28 0 chr3 121584263 121584370 -96452788 + MER41B LTR ERV1 526 635 0 21302 103 9 5 chr3 121584394 121588380 -96448778 - L1PA8A LINE L1 -13 6118 2120 271 222 0 0 chr3 121588380 121588434 -96448724 + MLT2B3 LTR ERVL 495 548 -6 622 177 4 226 chr3 121588875 121589118 -96448040 - MER5A DNA MER1_type 0 189 1 595 210 13 57 chr3 121589618 121589775 -96447383 - MIR SINE MIR -65 197 48 302 115 16 0 chr3 121590014 121590075 -96447083 + (TTTA)n Simple_repeat Simple_repeat 3 64 0 1920 128 17 7 chr3 121590084 121590373 -96446785 - AluSx SINE Alu -20 292 1 2204 112 3 13 chr3 121590677 121590990 -96446168 - AluSg SINE Alu 0 310 1 27 49 0 0 chr3 121591040 121591081 -96446077 + AT_rich Low_complexity Low_complexity 1 41 0 293 262 56 9 chr3 121591725 121591832 -96445326 + MIR SINE MIR 82 193 -69 186 43 0 0 chr3 121592377 121592400 -96444758 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 195 162 0 0 chr3 121592911 121592948 -96444210 + (TG)n Simple_repeat Simple_repeat 1 37 0 5383 140 38 0 chr3 121592973 121593822 -96443336 + L1PA16 LINE L1 5128 6020 -146 180 0 0 0 chr3 121593822 121593842 -96443316 + (GGGA)n Simple_repeat Simple_repeat 4 23 0 5383 140 38 0 chr3 121593842 121593978 -96443180 + L1PA16 LINE L1 6020 6149 -17 21 0 0 0 chr3 121594508 121594529 -96442629 + AT_rich Low_complexity Low_complexity 1 21 0 316 277 59 20 chr3 121594955 121595056 -96442102 + L2 LINE L2 3168 3272 0 1758 156 0 75 chr3 121595092 121595426 -96441732 - AluJb SINE Alu -3 309 1 2397 127 41 0 chr3 121595712 121596099 -96441059 - MER57A LTR ERV1 0 403 1 2219 97 0 0 chr3 121596142 121596446 -96440712 + AluSg SINE Alu 1 304 0 386 353 95 42 chr3 121596503 121596786 -96440372 + L3 LINE CR1 1218 1515 -62 984 217 4 26 chr3 121597833 121598059 -96439099 - MER58A DNA MER1_type -3 221 1 21 0 0 0 chr3 121598265 121598286 -96438872 + AT_rich Low_complexity Low_complexity 1 21 0 2806 91 3 3 chr3 121598292 121598667 -96438491 + THE1C LTR MaLR 1 375 0 37 39 0 0 chr3 121601060 121601111 -96436047 + AT_rich Low_complexity Low_complexity 1 51 0 1304 219 32 46 chr3 121601207 121601856 -96435302 - L1MEc LINE L1 -3603 2612 2020 1568 232 90 29 chr3 121601887 121602850 -96434308 + L1M4 LINE L1 2557 3649 -2497 331 314 29 0 chr3 121604002 121604104 -96433054 - MIR SINE MIR -122 140 36 815 254 152 55 chr3 121604362 121605126 -96432032 - HAL1 LINE L1 0 2507 1670 2416 110 0 0 chr3 121605134 121605444 -96431714 + AluSq SINE Alu 1 310 -3 22 0 0 0 chr3 121605480 121605502 -96431656 + AT_rich Low_complexity Low_complexity 1 22 0 321 361 103 56 chr3 121606052 121606373 -96430785 - L2 LINE L2 -15 3257 2922 374 231 82 30 chr3 121606513 121606647 -96430511 - L3 LINE CR1 -268 1309 1169 680 198 0 0 chr3 121607066 121607182 -96429976 + AluJo SINE Alu 3 118 -194 2400 105 6 6 chr3 121607182 121607534 -96429624 - THE1C LTR MaLR -4 371 20 1193 146 24 19 chr3 121607534 121607739 -96429419 + AluJo SINE Alu 97 302 -10 279 79 0 0 chr3 121607837 121607875 -96429283 + (TG)n Simple_repeat Simple_repeat 2 39 0 225 156 31 16 chr3 121607905 121607969 -96429189 + CT-rich Low_complexity Low_complexity 1 65 0 208 196 71 54 chr3 121608397 121608453 -96428705 - L2 LINE L2 -48 3224 3168 1363 275 35 15 chr3 121608819 121609219 -96427939 - MLT1E2 LTR MaLR -4 622 215 369 290 169 6 chr3 121609846 121610029 -96427129 + MIR SINE MIR 29 241 -21 * 395 202 0 24 chr3 121609997 121610081 -96427077 - MER5B DNA MER1_type -5 173 92 255 247 136 12 chr3 121610212 121610293 -96426865 - L3 LINE CR1 -1 1576 1486 503 313 111 19 chr3 121610314 121610522 -96426636 + MIR SINE MIR 2 228 -34 833 255 113 23 chr3 121610583 121610893 -96426265 - L3 LINE CR1 -95 1482 1145 2801 121 18 22 chr3 121611203 121611650 -96425508 + MER65A LTR ERV1 1 445 0 465 235 26 9 chr3 121611933 121612048 -96425110 - MIR SINE MIR 0 262 146 2034 96 11 0 chr3 121612068 121612349 -96424809 - AluSx SINE Alu -28 284 1 499 247 107 11 chr3 121612934 121613112 -96424046 - MIR SINE MIR -7 255 61 1338 176 59 7 chr3 121614115 121614469 -96422689 + L1ME LINE L1 5239 5610 -554 478 280 82 6 chr3 121614510 121614692 -96422466 + L1ME1 LINE L1 5967 6162 -4 490 292 148 14 chr3 121615121 121615337 -96421821 - MIR SINE MIR -15 247 3 445 260 19 82 chr3 121615381 121615589 -96421569 + MIR SINE MIR 53 247 -15 784 264 132 0 chr3 121615670 121615867 -96421291 + MIR SINE MIR 23 245 -17 2152 142 3 0 chr3 121616206 121616509 -96420649 + AluSx SINE Alu 1 304 -8 2687 90 3 0 chr3 121618854 121619208 -96417950 + THE1A LTR MaLR 1 355 0 1442 156 28 28 chr3 121619208 121619490 -96417668 - L1MC2 LINE L1 -13 6331 6050 199 374 39 45 chr3 121619572 121619727 -96417431 + MIR SINE MIR 1 154 -108 23 0 0 0 chr3 121619988 121620011 -96417147 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 121620130 121620152 -96417006 + AT_rich Low_complexity Low_complexity 1 22 0 384 254 39 31 chr3 121620963 121621093 -96416065 + MIR SINE MIR 76 206 -56 329 251 55 75 chr3 121621167 121621366 -96415792 + L2 LINE L2 3109 3303 -10 180 256 70 0 chr3 121621557 121621600 -96415558 - L3 LINE CR1 -11 1566 1521 202 268 155 0 chr3 121622132 121622203 -96414955 + MIR SINE MIR 38 119 -89 2060 78 0 0 chr3 121622568 121622825 -96414333 - AluY SINE Alu -15 296 40 180 0 0 0 chr3 121623454 121623474 -96413684 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 623 211 204 0 chr3 121624218 121624360 -96412798 + MER5A DNA MER1_type 9 179 -10 2139 129 0 0 chr3 121624390 121624684 -96412474 + AluSx SINE Alu 1 294 -18 2451 90 0 0 chr3 121624686 121624987 -96412171 + AluSg SINE Alu 1 301 -9 22 0 0 0 chr3 121625097 121625119 -96412039 + AT_rich Low_complexity Low_complexity 1 22 0 246 225 25 88 chr3 121626224 121626304 -96410854 - L2 LINE L2 -216 3097 3023 260 59 0 0 chr3 121626381 121626415 -96410743 + MER65B LTR ERV1 1 34 -497 2054 127 0 23 chr3 121626415 121626723 -96410435 + AluSq SINE Alu 1 301 -12 1996 144 53 3 chr3 121626784 121627145 -96410013 + MER65A LTR ERV1 47 425 -20 190 333 32 0 chr3 121627281 121627344 -96409814 - L2 LINE L2 -1522 1792 1728 278 226 16 0 chr3 121627349 121627411 -96409747 + MER3 DNA MER1_type 28 90 -119 * 1143 173 0 0 chr3 121627374 121627576 -96409582 - MER3 DNA MER1_type -6 203 2 488 317 36 15 chr3 121627912 121628106 -96409052 - MIR3 SINE MIR -8 200 2 22 56 0 0 chr3 121628910 121628946 -96408212 + AT_rich Low_complexity Low_complexity 1 36 0 1403 155 4 4 chr3 121629638 121629864 -96407294 - AluJb SINE Alu -3 309 84 9442 59 113 2 chr3 121630161 121631404 -96405754 + SVA Other Other 2 1381 -5 300 27 0 0 chr3 121631407 121631444 -96405714 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 2343 93 0 0 chr3 121631578 121631879 -96405279 + AluSg SINE Alu 2 302 -8 362 288 34 0 chr3 121631954 121632072 -96405086 + L1ME LINE L1 5632 5753 -368 567 244 49 47 chr3 121632206 121632436 -96404722 + MIR SINE MIR 23 246 -16 22 0 0 0 chr3 121633187 121633209 -96403949 + AT_rich Low_complexity Low_complexity 1 22 0 240 242 15 0 chr3 121633248 121633314 -96403844 + (TA)n Simple_repeat Simple_repeat 1 67 0 1112 270 102 17 chr3 121633837 121634241 -96402917 + L2 LINE L2 2239 2676 -638 2004 212 127 8 chr3 121634245 121634749 -96402409 + MER119 DNA MER1_type 6 569 -14 1623 246 69 22 chr3 121634758 121635372 -96401786 + L2 LINE L2 2661 3309 -4 2262 161 46 30 chr3 121635398 121635762 -96401396 + L1MB7 LINE L1 5649 6025 -159 2339 94 0 0 chr3 121635762 121636060 -96401098 + AluY SINE Alu 1 298 -13 2262 161 46 30 chr3 121636060 121636198 -96400960 + L1MB7 LINE L1 6025 6159 -25 2050 153 7 0 chr3 121636222 121636530 -96400628 - AluJo SINE Alu -2 310 1 1948 140 20 0 chr3 121636800 121637092 -96400066 + AluJb SINE Alu 1 298 -14 216 390 99 7 chr3 121637343 121637484 -96399674 + L2 LINE L2 3098 3251 -21 2292 90 0 17 chr3 121638299 121638599 -96398559 + AluSc SINE Alu 1 295 -14 1867 155 0 20 chr3 121638738 121639035 -96398123 + AluJb SINE Alu 1 291 -21 2063 118 3 29 chr3 121639261 121639574 -96397584 - AluSx SINE Alu -7 305 1 21 0 0 0 chr3 121639591 121639612 -96397546 + AT_rich Low_complexity Low_complexity 1 21 0 210 204 5 78 chr3 121641246 121641437 -96395721 + (TATAA)n Simple_repeat Simple_repeat 1 177 0 * 301 225 53 0 chr3 121641299 121641468 -96395690 + (TA)n Simple_repeat Simple_repeat 2 179 0 * 326 169 12 66 chr3 121641386 121641552 -96395606 + (TTATA)n Simple_repeat Simple_repeat 5 161 0 1885 188 55 174 chr3 121642103 121643077 -96394081 + MLT1D-int LTR MaLR 456 1313 -58 828 194 137 139 chr3 121643103 121643586 -96393572 + MLT1D LTR MaLR 3 343 -22 42217 37 2 2 chr3 121643771 121649919 -96387239 + L1PA3 LINE L1 2 6152 -3 305 285 100 60 chr3 121650011 121650292 -96386866 + L1MDa LINE L1 2359 2650 -3890 884 310 87 36 chr3 121650356 121650954 -96386204 + L1MDa LINE L1 2684 3250 -3290 5803 27 0 0 chr3 121650954 121651628 -96385530 - L1PA3 LINE L1 -7 6148 5475 884 310 87 36 chr3 121651628 121652684 -96384474 + L1MDa LINE L1 3250 4385 -2155 603 198 66 54 chr3 121652697 121652864 -96384294 + AluJb SINE Alu 129 297 -15 402 316 68 26 chr3 121652917 121653376 -96383782 + L1MDa LINE L1 4413 4890 -1650 19836 82 22 3 chr3 121653388 121656950 -96380208 - L1PA7 LINE L1 0 6154 2538 4688 123 9 25 chr3 121656950 121657684 -96379474 + L1P3 LINE L1 217 939 -5522 263 291 13 0 chr3 121657680 121657759 -96379399 + L1MDa LINE L1 4892 4971 -1569 * 1032 80 47 0 chr3 121657762 121657912 -96379246 + L1PA10 LINE L1 5787 5943 -225 1261 130 10 0 chr3 121657914 121658106 -96379052 + AluSg/x SINE Alu 110 303 -7 198 0 0 0 chr3 121658183 121658205 -96378953 + (TA)n Simple_repeat Simple_repeat 2 23 0 1888 58 18 0 chr3 121658205 121658480 -96378678 + L1P LINE L1 3019 3298 -2848 408 231 105 14 chr3 121658591 121658650 -96378508 + L1MC4a LINE L1 5834 5886 -1922 577 119 59 0 chr3 121658650 121658751 -96378407 + L1MA5A LINE L1 6190 6296 -1 408 231 105 14 chr3 121658751 121658834 -96378324 + L1MC4a LINE L1 5886 5989 -1819 198 0 0 0 chr3 121658835 121658857 -96378301 + (TA)n Simple_repeat Simple_repeat 2 23 0 1697 225 203 89 chr3 121659194 121659243 -96377915 + L1MC4 LINE L1 5844 5886 -2007 572 105 63 0 chr3 121659243 121659338 -96377820 + L1MA5A LINE L1 6190 6290 -7 1697 225 203 89 chr3 121659338 121659429 -96377729 + L1MC4 LINE L1 5886 5965 -1928 198 0 0 0 chr3 121659429 121659451 -96377707 + (TA)n Simple_repeat Simple_repeat 2 23 0 1697 225 203 89 chr3 121659451 121660305 -96376853 + L1MC4 LINE L1 5965 7037 -856 * 1905 219 37 51 chr3 121660275 121660868 -96376290 + L1MC4 LINE L1 7307 7891 -151 2183 121 17 22 chr3 121660887 121661242 -96375916 + L1PB3 LINE L1 5717 6069 -85 354 242 8 47 chr3 121661285 121661413 -96375745 + L1MC4 LINE L1 7920 8042 0 426 340 133 19 chr3 121661667 121662130 -96375028 + L2 LINE L2 1469 2012 -1302 1967 150 0 7 chr3 121662130 121662436 -96374722 + AluJb SINE Alu 1 304 -8 426 340 133 19 chr3 121662436 121662551 -96374607 + L2 LINE L2 2012 2113 -1201 194 129 0 0 chr3 121662594 121662625 -96374533 + MIR SINE MIR 232 262 0 605 327 130 32 chr3 121662761 121662926 -96374232 + L2 LINE L2 2147 2295 -1019 1977 163 0 0 chr3 121662926 121663226 -96373932 + AluJb SINE Alu 1 300 -12 605 327 130 32 chr3 121663226 121663708 -96373450 + L2 LINE L2 2295 2857 -457 197 328 17 0 chr3 121663799 121663857 -96373301 - MIR3 SINE MIR -49 159 101 2555 45 0 16 chr3 121663905 121664216 -96372942 + AluY SINE Alu 1 306 -5 347 280 52 88 chr3 121665172 121665365 -96371793 - MIR SINE MIR -7 255 70 517 262 41 0 chr3 121665432 121665554 -96371604 + MIR SINE MIR 36 162 -100 838 212 76 5 chr3 121665980 121666178 -96370980 - MIR SINE MIR 0 262 51 382 204 91 136 chr3 121666881 121666932 -96370226 + MER112 DNA MER1_type 2 54 -202 2744 10 0 0 chr3 121666932 121667231 -96369927 + AluYa5 SINE Alu 1 299 -12 382 204 91 136 chr3 121667231 121667444 -96369714 + MER112 DNA MER1_type 54 254 -2 1441 67 80 54 chr3 121668529 121668753 -96368405 - MER30 DNA MER1_type 0 230 1 419 284 77 0 chr3 121669368 121669523 -96367635 + L1MC4a LINE L1 5574 5740 -2068 398 317 130 10 chr3 121669616 121669824 -96367334 + MLT1J LTR MaLR 105 337 -174 380 256 80 7 chr3 121669947 121670084 -96367074 + L1MC4a LINE L1 5734 5880 -1928 378 322 9 9 chr3 121670108 121670223 -96366935 + MER5B DNA MER1_type 5 119 -59 195 42 0 0 chr3 121670249 121670273 -96366885 + (GA)n Simple_repeat Simple_repeat 2 25 0 1211 108 54 0 chr3 121670274 121670441 -96366717 - AluSg/x SINE Alu -8 302 127 2087 101 27 24 chr3 121670446 121670742 -96366416 - AluSq SINE Alu -16 297 1 242 145 0 145 chr3 121670751 121670813 -96366345 + MER5B DNA MER1_type 125 177 -1 501 289 78 15 chr3 121671672 121671863 -96365295 - MIR SINE MIR -37 225 16 411 171 13 13 chr3 121672426 121672502 -96364656 - MER112 DNA MER1_type -7 253 178 553 284 32 40 chr3 121672944 121673317 -96363841 + L1MC5 LINE L1 7558 7927 -34 2973 197 23 9 chr3 121673566 121674654 -96362504 + L1MB7 LINE L1 4729 5831 -353 1427 149 9 0 chr3 121674660 121674888 -96362270 + AluJb SINE Alu 1 230 -82 1816 180 15 0 chr3 121674894 121675251 -96361907 + L1MB7 LINE L1 5833 6194 0 21 57 0 0 chr3 121675816 121675851 -96361307 + AT_rich Low_complexity Low_complexity 1 35 0 2158 130 3 0 chr3 121676217 121676524 -96360634 + AluSq SINE Alu 1 308 -5 400 294 39 0 chr3 121676686 121676788 -96360370 - MER91C DNA MER1_type -34 106 1 768 131 0 83 chr3 121677011 121677156 -96360002 + FLAM_A SINE Alu 1 133 0 451 263 89 36 chr3 121677383 121677607 -96359551 + MARNA DNA Mariner 243 478 -108 569 157 143 189 chr3 121677612 121677829 -96359329 + MER8 DNA MER2_type 33 239 0 1696 166 7 24 chr3 121678187 121678482 -96358676 + AluJo SINE Alu 1 290 -22 799 214 48 11 chr3 121680302 121680489 -96356669 - MIR SINE MIR -6 256 63 4434 165 58 4 chr3 121680514 121681821 -96355337 + L1MB7 LINE L1 4802 6183 -1 319 206 198 0 chr3 121681935 121682061 -96355097 + L1ME4a LINE L1 5781 5931 -190 354 240 53 0 chr3 121682148 121682223 -96354935 + MIR SINE MIR 1 79 -183 2067 125 46 25 chr3 121682266 121682633 -96354525 + THE1C LTR MaLR 1 375 0 6419 87 10 2 chr3 121682725 121684351 -96352807 + L1PA10 LINE L1 4531 6165 -3 251 261 43 43 chr3 121684380 121684472 -96352686 - MIR SINE MIR -134 128 37 815 241 12 6 chr3 121684627 121684793 -96352365 + MLT1E1 LTR MaLR 466 632 -22 2444 82 3 0 chr3 121684968 121685273 -96351885 - AluSg SINE Alu -4 306 1 267 259 71 12 chr3 121685404 121685489 -96351669 - L2 LINE L2 -5 3308 3219 1667 164 13 32 chr3 121685698 121686008 -96351150 + AluJo SINE Alu 8 311 -1 330 342 64 76 chr3 121686350 121686692 -96350466 - L2 LINE L2 -1 3271 2934 264 305 150 18 chr3 121686736 121686903 -96350255 - L2 LINE L2 -474 2840 2652 181 296 204 39 chr3 121687102 121687332 -96349826 + L2 LINE L2 2898 3165 -107 2527 46 0 0 chr3 121687905 121688211 -96348947 + AluY SINE Alu 1 306 -5 1661 172 7 0 chr3 121688337 121688610 -96348548 + AluJb SINE Alu 24 298 -14 227 292 154 12 chr3 121688784 121689014 -96348144 - L2 LINE L2 -242 3030 2778 1276 285 90 0 chr3 121689204 121689628 -96347530 + L2 LINE L2 1035 1496 -1818 371 240 86 52 chr3 121689632 121689865 -96347293 + L1ME1 LINE L1 1435 1874 -913 2311 114 0 0 chr3 121689871 121690169 -96346989 - AluSx SINE Alu -14 298 1 2467 225 59 26 chr3 121690169 121691144 -96346014 + L1ME1 LINE L1 2195 3170 -3256 1381 187 45 72 chr3 121691144 121691519 -96345639 + MLT1A1 LTR MaLR 1 365 0 1182 175 234 19 chr3 121691519 121691839 -96345319 + MLT1A1-int LTR MaLR 1 389 -1346 4880 210 36 38 chr3 121691845 121692167 -96344991 + L1ME1 LINE L1 4212 4533 -1913 902 135 0 0 chr3 121692167 121692300 -96344858 + FLAM_C SINE Alu 1 133 0 4880 210 36 38 chr3 121692300 121692394 -96344764 + L1ME1 LINE L1 4533 4626 -1820 2306 101 0 0 chr3 121692394 121692690 -96344468 + AluSx SINE Alu 1 296 -16 4880 210 36 38 chr3 121692690 121694433 -96342725 + L1ME1 LINE L1 4626 6366 -80 319 209 93 0 chr3 121694472 121694558 -96342600 + L1MA10 LINE L1 6235 6328 -6 1064 184 111 17 chr3 121694589 121694823 -96342335 + MER89 LTR ERV1 301 556 -3 315 49 0 0 chr3 121694825 121694866 -96342292 + (TG)n Simple_repeat Simple_repeat 2 42 0 407 222 100 0 chr3 121694964 121695054 -96342104 - MER89 LTR ERV1 -262 297 199 1984 140 20 0 chr3 121695102 121695395 -96341763 - AluSx SINE Alu -13 299 1 11587 220 49 12 chr3 121695398 121697942 -96339216 - MER89-int LTR ERV1 0 6801 4163 3541 244 92 45 chr3 121697964 121698002 -96339156 - MER89-int LTR ERV1 -3194 3708 3673 2174 103 0 27 chr3 121698002 121698303 -96338855 - AluSq SINE Alu -18 295 3 3541 244 92 45 chr3 121698303 121699579 -96337579 - MER89-int LTR ERV1 -3229 3673 118 2100 214 25 30 chr3 121699582 121700053 -96337105 - MER89-int LTR ERV1 -4259 2542 2074 2113 122 20 0 chr3 121700067 121700362 -96336796 + AluSx SINE Alu 1 301 -11 4399 245 67 67 chr3 121700416 121702018 -96335140 - MER89-int LTR ERV1 -5200 1601 1 2040 193 26 10 chr3 121702022 121702504 -96334654 - MER89 LTR ERV1 -4 555 1 2520 89 33 8 chr3 121702551 121702910 -96334248 + L1MA2 LINE L1 5937 6304 0 682 299 33 12 chr3 121703291 121703532 -96333626 + L3 LINE CR1 1219 1464 -113 428 51 17 0 chr3 121703806 121703865 -96333293 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 1789 159 7 14 chr3 121703865 121704161 -96332997 - AluJb SINE Alu -18 294 1 327 121 0 0 chr3 121706627 121706685 -96330473 + (GA)n Simple_repeat Simple_repeat 1 58 0 314 289 62 0 chr3 121707454 121707551 -96329607 + L2 LINE L2 3139 3241 -31 1743 150 11 7 chr3 121707557 121707837 -96329321 + AluJo SINE Alu 1 281 -31 1004 175 27 93 chr3 121710244 121710349 -96326809 - MLT1A1 LTR MaLR -125 240 130 1989 153 0 0 chr3 121710349 121710649 -96326509 - AluSx SINE Alu -12 300 1 1004 175 27 93 chr3 121710649 121710800 -96326358 - MLT1A1 LTR MaLR -235 130 1 1137 206 55 4 chr3 121710984 121711256 -96325902 + MER33 DNA MER1_type 35 320 -4 2157 207 59 71 chr3 121711419 121712181 -96324977 - L1MC5 LINE L1 -659 7302 6531 1850 155 68 31 chr3 121712288 121712322 -96324836 - MSTB1 LTR MaLR -37 395 364 2007 97 0 4 chr3 121712322 121712589 -96324569 + AluSq SINE Alu 36 301 -12 1850 155 68 31 chr3 121712589 121712935 -96324223 - MSTB1 LTR MaLR -68 364 1 21 71 0 0 chr3 121713299 121713341 -96323817 + AT_rich Low_complexity Low_complexity 1 42 0 276 30 0 0 chr3 121713678 121713700 -96323458 + (CA)n Simple_repeat Simple_repeat 1 55 0 276 30 0 0 chr3 121713700 121713733 -96323425 + (CA)n Simple_repeat Simple_repeat 2 34 0 1944 120 0 50 chr3 121713735 121714036 -96323122 - AluSx SINE Alu -26 286 1 562 115 0 0 chr3 121714120 121714198 -96322960 - MADE1 DNA Mariner 0 80 3 553 296 113 27 chr3 121714203 121714478 -96322680 - HAL1b LINE L1 -743 605 355 2179 129 3 0 chr3 121714478 121714788 -96322370 - AluSx SINE Alu 0 312 2 553 296 113 27 chr3 121714788 121714988 -96322170 - HAL1b LINE L1 -993 355 89 345 75 0 0 chr3 121715469 121715522 -96321636 + (TG)n Simple_repeat Simple_repeat 2 54 0 2127 116 3 0 chr3 121715522 121715807 -96321351 - AluSx SINE Alu -26 286 1 1931 201 21 78 chr3 121716290 121716645 -96320513 - L1MC4 LINE L1 -5 8037 7663 216 0 0 0 chr3 121716645 121716669 -96320489 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1931 201 21 78 chr3 121716669 121716738 -96320420 - L1MC4 LINE L1 -379 7663 7592 1997 103 4 7 chr3 121716738 121717050 -96320108 - AluSc SINE Alu 0 317 7 1931 201 21 78 chr3 121717050 121717186 -96319972 - L1MC4 LINE L1 -450 7592 7507 2287 189 21 42 chr3 121717287 121717532 -96319626 - L1MC4 LINE L1 -503 7539 7290 2285 97 7 10 chr3 121717532 121717842 -96319316 + AluSx SINE Alu 1 309 -3 2287 189 21 42 chr3 121717842 121718115 -96319043 - L1MC4 LINE L1 -752 7290 7032 326 237 41 10 chr3 121718631 121718728 -96318430 + L1ME4a LINE L1 6007 6106 -15 271 302 129 29 chr3 121718757 121718896 -96318262 + MIR3 SINE MIR 4 156 -52 1184 116 6 0 chr3 121719787 121719960 -96317198 + L1MA5 LINE L1 6125 6298 -2 381 64 0 0 chr3 121720014 121720061 -96317097 + L1MA5 LINE L1 5911 5957 -343 27 73 0 0 chr3 121720088 121720143 -96317015 + AT_rich Low_complexity Low_complexity 1 55 0 1666 172 35 35 chr3 121720839 121721182 -96315976 - L1MC2 LINE L1 -84 6260 5918 3072 146 40 8 chr3 121721182 121721688 -96315470 + MER34 LTR ERV1 1 522 -20 3644 167 43 21 chr3 121721688 121722696 -96314462 - L1MC2 LINE L1 -425 5919 4901 23 68 0 0 chr3 121723407 121723451 -96313707 + AT_rich Low_complexity Low_complexity 1 44 0 4424 70 14 25 chr3 121723451 121724023 -96313135 - L1PA13 LINE L1 -1 6162 5597 306 361 39 0 chr3 121724025 121724155 -96313003 - MIR3 SINE MIR -31 177 43 284 0 0 27 chr3 121724525 121724562 -96312596 + (TG)n Simple_repeat Simple_repeat 2 37 0 375 202 22 11 chr3 121725143 121725232 -96311926 - LTR67 LTR ERVL -9 548 459 2113 117 0 20 chr3 121726459 121726759 -96310399 + AluSq SINE Alu 1 294 -19 2791 115 3 3 chr3 121727030 121727394 -96309764 + THE1B LTR MaLR 1 364 0 225 270 22 124 chr3 121727769 121727947 -96309211 + L2 LINE L2 2855 3014 -258 263 346 30 10 chr3 121728048 121728149 -96309009 + L2 LINE L2 3210 3312 -1 401 290 0 40 chr3 121728744 121728868 -96308290 - MIR SINE MIR -97 165 47 1021 244 4 38 chr3 121729231 121729497 -96307661 - MER93b LTR ERV1 0 373 117 2064 106 41 0 chr3 121729507 121729800 -96307358 - AluSx SINE Alu -4 308 4 1657 189 49 99 chr3 121730006 121730493 -96306665 + MLT1C LTR MaLR 1 463 -4 219 152 0 0 chr3 121730716 121730762 -96306396 + GA-rich Low_complexity Low_complexity 1 46 0 821 275 81 71 chr3 121731037 121731094 -96306064 - L1ME3 LINE L1 -214 5948 5893 1607 254 92 12 chr3 121731094 121731516 -96305642 + LTR40b LTR ERVL 5 460 -2 821 275 81 71 chr3 121731516 121732123 -96305035 - L1ME3 LINE L1 -269 5893 5340 1917 151 0 16 chr3 121732123 121732440 -96304718 - AluJb SINE Alu 0 312 1 821 275 81 71 chr3 121732440 121732605 -96304553 - L1ME3 LINE L1 -822 5340 5178 349 315 79 12 chr3 121732717 121732882 -96304276 + MIR3 SINE MIR 30 205 -3 395 271 110 8 chr3 121733069 121733187 -96303971 + L2 LINE L2 3137 3266 -6 395 336 14 14 chr3 121734341 121734481 -96302677 + MER5A DNA MER1_type 7 146 -43 4341 150 26 18 chr3 121734841 121735569 -96301589 + L1MB7 LINE L1 5432 6165 -19 380 277 47 51 chr3 121735906 121736169 -96300989 + L1ME3A LINE L1 4877 5145 -1001 1427 238 35 72 chr3 121736170 121736633 -96300525 + L1MC5 LINE L1 7312 7748 -213 2250 92 30 3 chr3 121736633 121736937 -96300221 - AluSp SINE Alu -1 312 1 1427 238 35 72 chr3 121736937 121737098 -96300060 + L1MC5 LINE L1 7748 7913 -48 226 268 73 92 chr3 121737301 121737465 -96299693 - L2 LINE L2 -831 2483 2323 189 0 0 0 chr3 121737857 121737878 -96299280 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2207 103 20 0 chr3 121737947 121738239 -96298919 + AluSx SINE Alu 1 298 -14 476 246 45 36 chr3 121738799 121738909 -96298249 + MER5B DNA MER1_type 67 177 -1 402 108 0 0 chr3 121739016 121739081 -96298077 + (TG)n Simple_repeat Simple_repeat 1 65 0 472 154 145 26 chr3 121739607 121739724 -96297434 - L2 LINE L2 0 3313 3183 276 203 99 139 chr3 121740894 121741012 -96296146 + L1ME3A LINE L1 5295 5403 -767 2490 77 3 0 chr3 121741012 121741322 -96295836 + AluY SINE Alu 1 311 0 276 203 99 139 chr3 121741322 121741405 -96295753 + L1ME3A LINE L1 5403 5488 -682 1005 172 41 36 chr3 121741444 121741550 -96295608 + L1ME3A LINE L1 5775 5879 -291 2060 107 7 23 chr3 121741550 121741858 -96295300 + AluSx SINE Alu 1 303 -9 1005 172 41 36 chr3 121741858 121741972 -96295186 + L1ME3A LINE L1 5879 5996 -174 247 227 52 62 chr3 121741977 121742074 -96295084 + L1ME3A LINE L1 6072 6167 -3 468 225 47 116 chr3 121742439 121742568 -96294590 + MER5B DNA MER1_type 69 177 -1 26 0 0 27 chr3 121742601 121742617 -96294541 + AT_rich Low_complexity Low_complexity 1 16 -20 2015 126 7 0 chr3 121742617 121742903 -96294255 - AluSx SINE Alu -24 288 1 26 0 0 27 chr3 121742903 121742923 -96294235 + AT_rich Low_complexity Low_complexity 16 36 0 752 224 60 6 chr3 121743548 121743731 -96293427 - MIR3 SINE MIR -6 202 10 1388 191 43 25 chr3 121743838 121744115 -96293043 + AluJo SINE Alu 1 282 -30 216 0 0 0 chr3 121744185 121744209 -96292949 + (CA)n Simple_repeat Simple_repeat 1 24 0 2021 124 0 3 chr3 121744368 121744651 -96292507 + AluSx SINE Alu 19 300 -12 198 304 295 6 chr3 121744676 121745018 -96292140 - L2 LINE L2 -631 2683 2243 234 322 217 49 chr3 121745775 121746247 -96290911 - L2 LINE L2 -790 2524 2133 1853 184 79 12 chr3 121746247 121746589 -96290569 + MLT1A1 LTR MaLR 1 365 0 234 322 217 49 chr3 121746589 121746997 -96290161 - L2 LINE L2 -1181 2133 1496 213 294 0 118 chr3 121749933 121750035 -96287123 - L2 LINE L2 -28 3244 3155 1007 185 58 11 chr3 121750511 121750700 -96286458 + MER63A DNA MER1_type 8 205 -5 2565 46 0 7 chr3 121750882 121751185 -96285973 + AluY SINE Alu 1 301 -10 1772 172 3 27 chr3 121751267 121751564 -96285594 + AluJo SINE Alu 4 293 -19 261 287 0 53 chr3 121753100 121753194 -96283964 + L2 LINE L2 3225 3313 0 210 240 0 0 chr3 121753626 121753676 -96283482 + GA-rich Low_complexity Low_complexity 3 52 0 2006 129 0 4 chr3 121754287 121754567 -96282591 + AluSx SINE Alu 1 279 -33 613 126 0 0 chr3 121755361 121755456 -96281702 + AluSp/q SINE Alu 212 306 -7 23 0 0 0 chr3 121755475 121755498 -96281660 + AT_rich Low_complexity Low_complexity 1 23 0 246 176 54 27 chr3 121755567 121755641 -96281517 - MIR3 SINE MIR -23 185 110 435 205 60 93 chr3 121758026 121758177 -96278981 + MIR SINE MIR 23 168 -94 493 188 31 0 chr3 121758906 121759002 -96278156 + L1MC4 LINE L1 6970 7068 -974 2624 213 76 84 chr3 121759112 121760069 -96277089 + L1MC4 LINE L1 7092 8041 -1 230 209 0 0 chr3 121760164 121760207 -96276951 - L2 LINE L2 -13 3259 3217 748 234 57 6 chr3 121760331 121760506 -96276652 - MIR SINE MIR -50 212 29 1062 256 225 12 chr3 121761521 121761943 -96275215 - MLT1H LTR MaLR -37 512 1 2273 112 0 3 chr3 121762225 121762530 -96274628 - AluSx SINE Alu -8 304 1 859 282 102 23 chr3 121762554 121762947 -96274211 - L2 LINE L2 -2 3311 2888 886 147 20 7 chr3 121763153 121763303 -96273855 - L1MB7 LINE L1 -7 6177 6026 2312 187 35 20 chr3 121763303 121763571 -96273587 + L1MB7 LINE L1 4280 4561 -1585 2534 188 70 2 chr3 121763571 121764044 -96273114 + MLT1D LTR MaLR 1 505 0 2312 187 35 20 chr3 121764044 121764284 -96272874 + L1MB7 LINE L1 4561 4796 -1350 859 39 0 0 chr3 121764284 121764387 -96272771 + AluY SINE Alu 175 277 -34 3428 153 25 13 chr3 121764409 121764944 -96272214 + L1MB7 LINE L1 5557 6101 -83 500 145 13 0 chr3 121764944 121765020 -96272138 + MADE1 DNA Mariner 4 80 0 3428 153 25 13 chr3 121765020 121765085 -96272073 + L1MB7 LINE L1 6101 6164 -20 958 115 77 0 chr3 121765107 121765263 -96271895 - L1M4 LINE L1 -535 5649 5482 2353 89 23 0 chr3 121765286 121765588 -96271570 - AluSg SINE Alu -1 309 1 2016 119 103 22 chr3 121765932 121766243 -96270915 + MER1B DNA MER1_type 2 337 0 23 0 0 0 chr3 121767240 121767263 -96269895 + AT_rich Low_complexity Low_complexity 1 23 0 320 269 93 0 chr3 121767671 121767779 -96269379 - MLT1L LTR MaLR -335 280 163 1030 178 30 91 chr3 121767834 121767993 -96269165 - MER20 DNA MER1_type 0 219 77 1765 163 3 23 chr3 121767993 121768294 -96268864 + AluJo SINE Alu 1 295 -17 1030 178 30 91 chr3 121768294 121768364 -96268794 - MER20 DNA MER1_type -142 77 4 2225 105 3 10 chr3 121769917 121770222 -96266936 + AluSc SINE Alu 1 303 -6 248 179 0 18 chr3 121771013 121771069 -96266089 + T-rich Low_complexity Low_complexity 3 57 0 314 109 18 18 chr3 121771199 121771254 -96265904 + L1MA9 LINE L1 6221 6275 -37 273 246 29 0 chr3 121771312 121771381 -96265777 + MIR SINE MIR 70 140 -122 1794 169 3 10 chr3 121771547 121771855 -96265303 + AluJo SINE Alu 1 306 -6 2123 198 31 36 chr3 121772208 121772715 -96264443 + L1MA9 LINE L1 5769 6275 -37 2194 121 0 25 chr3 121772730 121773045 -96264113 + AluSx SINE Alu 1 307 -5 548 301 27 0 chr3 121773081 121773267 -96263891 + MIR SINE MIR 70 260 -2 198 71 0 0 chr3 121773287 121773315 -96263843 + (CAG)n Simple_repeat Simple_repeat 2 29 0 995 224 19 5 chr3 121773961 121774166 -96262992 - MER58 DNA MER1_type -2212 208 1 244 296 112 0 chr3 121774433 121774558 -96262600 + MIR3 SINE MIR 70 208 0 21 36 0 0 chr3 121776551 121776579 -96260579 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 121776714 121776736 -96260422 + AT_rich Low_complexity Low_complexity 1 22 0 1959 94 8 15 chr3 121777828 121778093 -96259065 - AluSx SINE Alu -12 300 38 1913 153 6 10 chr3 121778497 121778810 -96258348 + AluJb SINE Alu 1 312 0 810 219 24 0 chr3 121779024 121779188 -96257970 + MER5B DNA MER1_type 1 168 -10 425 262 146 6 chr3 121780181 121780345 -96256813 - MIR SINE MIR -64 198 12 228 277 0 0 chr3 121781471 121781536 -96255622 - MLT1L LTR MaLR -5 610 546 2182 105 7 10 chr3 121781835 121782141 -96255017 - AluSx SINE Alu -7 305 1 776 286 119 36 chr3 121782700 121783253 -96253905 - L1ME3 LINE L1 -111 6010 5413 2055 83 72 0 chr3 121784119 121784396 -96252762 - AluSg SINE Alu -13 297 1 967 290 241 33 chr3 121785657 121786229 -96250929 - MER115 DNA AcHobo -1 692 2 854 278 88 36 chr3 121786676 121787040 -96250118 - LTR33 LTR ERVL -7 514 132 207 184 20 41 chr3 121788704 121788753 -96248405 - L2 LINE L2 -3 3310 3263 1630 77 0 52 chr3 121789223 121789456 -96247702 + L1PA11 LINE L1 5953 6173 -1 2398 71 10 0 chr3 121789466 121789760 -96247398 - AluSp SINE Alu -16 297 1 30 0 0 0 chr3 121789768 121789798 -96247360 + AT_rich Low_complexity Low_complexity 1 30 0 571 259 0 0 chr3 121789832 121789963 -96247195 + MER94 DNA DNA 2 132 -2 190 315 31 54 chr3 121790106 121790236 -96246922 + MIR3 SINE MIR 37 163 -45 5243 134 31 25 chr3 121790520 121791396 -96245762 - L1MC1 LINE L1 0 6333 5453 1943 164 0 3 chr3 121791587 121791898 -96245260 - AluSx SINE Alu -2 310 1 523 120 10 10 chr3 121792756 121792856 -96244302 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 288 0 0 0 chr3 121792966 121792998 -96244160 + (TG)n Simple_repeat Simple_repeat 1 32 0 294 280 0 0 chr3 121793945 121794020 -96243138 + L1MC4 LINE L1 7913 7987 -55 955 143 0 0 chr3 121794096 121794229 -96242929 + FLAM_C SINE Alu 1 133 0 339 297 108 81 chr3 121794234 121794590 -96242568 + L1M4 LINE L1 4345 4719 -1427 820 193 155 0 chr3 121794590 121794771 -96242387 + MER3 DNA MER1_type 1 209 0 339 297 108 81 chr3 121794771 121794885 -96242273 + L1M4 LINE L1 4719 4828 -1318 2391 85 0 7 chr3 121794956 121795263 -96241895 + AluSg1 SINE Alu 1 305 -4 1569 206 0 16 chr3 121795679 121795994 -96241164 + AluJo SINE Alu 1 310 -2 218 204 0 0 chr3 121796055 121796104 -96241054 + A-rich Low_complexity Low_complexity 1 49 0 2046 194 18 10 chr3 121796955 121797353 -96239805 - L1MB8 LINE L1 -99 6079 5679 * 4703 128 24 45 chr3 121797348 121797893 -96239265 - L1MA3 LINE L1 -1 6170 5617 2142 100 0 41 chr3 121797893 121798212 -96238946 - AluSx SINE Alu -6 306 1 4703 128 24 45 chr3 121798212 121798720 -96238438 - L1MA3 LINE L1 -554 5617 5100 216 0 0 0 chr3 121799352 121799376 -96237782 + (TCC)n Simple_repeat Simple_repeat 1 24 0 663 307 46 36 chr3 121799940 121800246 -96236912 + L2 LINE L2 3005 3313 0 1077 161 0 12 chr3 121802164 121802332 -96234826 + FRAM SINE Alu 1 166 0 243 214 0 0 chr3 121803448 121803504 -96233654 + MIR SINE MIR 70 125 -137 197 293 95 52 chr3 121805414 121805477 -96231681 - L2 LINE L2 -38 3234 3175 1665 46 0 0 chr3 121805477 121805673 -96231485 + 7SLRNA srpRNA srpRNA 1 196 -124 197 293 95 52 chr3 121805673 121805725 -96231433 - L2 LINE L2 -97 3175 3114 1002 128 0 0 chr3 121807148 121807281 -96229877 + AluSq/x SINE Alu 1 133 -180 1987 137 0 34 chr3 121807287 121807609 -96229549 + AluSx SINE Alu 1 311 -1 786 200 0 0 chr3 121807988 121808118 -96229040 + FLAM_C SINE Alu 2 131 -2 2157 113 0 31 chr3 121808358 121808676 -96228482 + AluSc SINE Alu 1 308 -1 21 0 0 0 chr3 121808872 121808893 -96228265 + AT_rich Low_complexity Low_complexity 1 21 0 2066 130 7 0 chr3 121808896 121809196 -96227962 + AluSx SINE Alu 1 302 -10 232 283 35 69 chr3 121809671 121809816 -96227342 - MIR SINE MIR -58 204 65 2582 52 0 3 chr3 121809869 121810177 -96226981 + AluY SINE Alu 1 307 -4 1384 177 28 28 chr3 121810182 121810431 -96226727 + AluJo SINE Alu 7 255 -57 641 119 0 0 chr3 121810568 121810652 -96226506 + AluS SINE Alu 2 85 -227 487 198 57 70 chr3 121810652 121810809 -96226349 + pTR5 LTR ERV1 743 897 -1541 1348 120 0 10 chr3 121810818 121811010 -96226148 - AluSq SINE Alu -121 192 3 1455 236 60 18 chr3 121811014 121811412 -96225746 - L1ME LINE L1 -458 5940 5526 5827 179 97 49 chr3 121811542 121811888 -96225270 - Charlie1a DNA MER1_type -1311 1450 1122 7088 111 65 46 chr3 121811888 121813094 -96224064 - Tigger3b DNA MER2_type -2 1229 1 5827 179 97 49 chr3 121813094 121813602 -96223556 - Charlie1a DNA MER1_type -1639 1122 640 1983 142 10 0 chr3 121813602 121813904 -96223254 - AluSx SINE Alu -7 305 1 5827 179 97 49 chr3 121813904 121814431 -96222727 - Charlie1a DNA MER1_type -2121 640 2 1136 256 87 64 chr3 121814449 121814951 -96222207 - L1ME LINE L1 -1120 5262 4744 2592 56 0 28 chr3 121814951 121815271 -96221887 - AluY SINE Alu 0 311 1 1136 256 87 64 chr3 121815271 121815330 -96221828 - L1ME LINE L1 -1638 4744 4688 1837 285 85 31 chr3 121815340 121815946 -96221212 - L1ME LINE L1 -1994 4388 3722 1471 155 25 39 chr3 121815946 121816230 -96220928 - L1MB8 LINE L1 0 6178 5899 1837 285 85 31 chr3 121816230 121816466 -96220692 - L1ME LINE L1 -2660 3722 3500 1215 200 0 0 chr3 121816468 121816683 -96220475 - AluJb SINE Alu 0 312 98 821 232 60 12 chr3 121816726 121816976 -96220182 - L1ME LINE L1 -2921 3461 3200 380 55 18 0 chr3 121816976 121817031 -96220127 + (TC)n Simple_repeat Simple_repeat 2 57 0 1181 245 109 72 chr3 121817251 121818237 -96218921 - L1ME LINE L1 -3939 2624 1602 1337 107 0 0 chr3 121818280 121818457 -96218701 - AluSq SINE Alu -136 177 1 964 108 24 48 chr3 121818458 121818625 -96218533 - MER30 DNA MER1_type -67 163 1 362 326 41 7 chr3 121819054 121819201 -96217957 - L1ME LINE L1 -4810 1753 1602 1166 97 0 0 chr3 121819244 121819389 -96217769 - AluSq SINE Alu -136 177 33 484 329 57 8 chr3 121819389 121819669 -96217489 - L1ME LINE L1 -4606 1697 1182 2444 85 0 7 chr3 121819721 121820027 -96217131 + AluY SINE Alu 1 304 -7 241 200 92 0 chr3 121820088 121820153 -96217005 - L1MB7 LINE L1 -12 6172 6102 * 304 212 212 15 chr3 121820124 121820256 -96216902 - L1ME1 LINE L1 -68 6098 5941 2125 121 0 56 chr3 121821083 121821406 -96215752 - AluSx SINE Alu -7 305 1 309 244 22 22 chr3 121821798 121821888 -96215270 + MIR3 SINE MIR 113 202 -6 225 65 0 0 chr3 121822622 121822653 -96214505 + (TA)n Simple_repeat Simple_repeat 2 32 0 225 0 0 0 chr3 121825823 121825848 -96211310 + (GA)n Simple_repeat Simple_repeat 1 25 0 * 324 70 0 0 chr3 121825847 121825890 -96211268 + (TG)n Simple_repeat Simple_repeat 1 43 0 248 179 0 18 chr3 121825890 121825946 -96211212 + GA-rich Low_complexity Low_complexity 2 56 0 1855 131 0 14 chr3 121826411 121826686 -96210472 + AluSx SINE Alu 1 271 -41 251 136 169 34 chr3 121826753 121826812 -96210346 + Alu SINE Alu 236 302 0 2350 92 0 7 chr3 121827060 121827365 -96209793 + AluY SINE Alu 1 303 -8 189 154 0 0 chr3 121827476 121827515 -96209643 + (CA)n Simple_repeat Simple_repeat 2 40 0 384 77 0 0 chr3 121830988 121831040 -96206118 + (CTG)n Simple_repeat Simple_repeat 2 53 0 23 33 0 0 chr3 121835166 121835196 -96201962 + AT_rich Low_complexity Low_complexity 1 30 0 2264 118 0 0 chr3 121835581 121835886 -96201272 - AluSx SINE Alu -7 305 1 625 210 61 39 chr3 121836469 121836650 -96200508 - MIR SINE MIR -1 261 77 526 275 34 7 chr3 121836644 121836793 -96200365 - MIR SINE MIR -98 164 12 * 940 243 160 44 chr3 121838303 121838489 -96198669 - L2 LINE L2 -5 3308 3145 1506 137 202 13 chr3 121838489 121838796 -96198362 + MLT1A1 LTR MaLR 1 365 0 940 243 160 44 chr3 121838796 121839041 -96198117 - L2 LINE L2 -168 3145 2827 2022 142 3 7 chr3 121839283 121839585 -96197573 + AluSx SINE Alu 1 301 -11 2359 87 3 0 chr3 121839641 121839939 -96197219 + AluSp SINE Alu 1 299 -14 1936 119 0 4 chr3 121840059 121840327 -96196831 - AluSx SINE Alu -45 267 1 2014 99 19 71 chr3 121840338 121840660 -96196498 - AluY SINE Alu -4 307 3 2139 81 8 0 chr3 121841382 121841673 -96195485 + AluSx SINE Alu 24 316 0 1089 257 83 82 chr3 121841754 121842993 -96194165 + HAL1 LINE L1 238 2212 -295 625 249 33 62 chr3 121843005 121843246 -96193912 + HAL1 LINE L1 2264 2497 -10 2114 125 0 3 chr3 121844091 121844388 -96192770 + AluSx SINE Alu 1 296 -16 204 158 0 0 chr3 121844388 121844426 -96192732 + G-rich Low_complexity Low_complexity 3 40 0 1362 190 56 14 chr3 121844535 121844819 -96192339 - AluJo SINE Alu -16 296 1 1921 179 0 6 chr3 121845533 121845845 -96191313 - AluJb SINE Alu -2 310 1 2060 112 58 3 chr3 121845906 121846200 -96190958 - AluSx SINE Alu -2 310 1 2404 93 13 0 chr3 121848116 121848417 -96188741 - AluSx SINE Alu -7 305 1 229 242 73 84 chr3 121849226 121849404 -96187754 + L1ME4a LINE L1 5881 6056 -65 842 116 8 8 chr3 121849457 121849586 -96187572 - THE1C LTR MaLR 0 375 247 2530 77 11 130 chr3 121849590 121850045 -96187113 - THE1C-int LTR MaLR -1179 401 1 2738 103 19 3 chr3 121850045 121850414 -96186744 - THE1C LTR MaLR 0 375 1 639 318 17 13 chr3 121850522 121850755 -96186403 + MIR SINE MIR 23 256 -6 322 316 31 10 chr3 121851656 121851754 -96185404 + MER5A DNA MER1_type 59 158 -31 346 161 0 25 chr3 121851757 121851838 -96185320 + C-rich Low_complexity Low_complexity 3 81 0 241 232 143 0 chr3 121851886 121851942 -96185216 + MER5A DNA MER1_type 101 164 -25 191 268 54 0 chr3 121851903 121851959 -96185199 - MER5B DNA MER1_type -114 64 6 * 1341 141 38 156 chr3 121852512 121852784 -96184374 - AluJo SINE Alu -1 301 75 288 0 0 0 chr3 121852784 121852816 -96184342 + (TC)n Simple_repeat Simple_repeat 1 32 0 1341 141 38 156 chr3 121852816 121852883 -96184275 - AluJo SINE Alu -227 75 2 232 217 22 0 chr3 121852991 121853037 -96184121 + MER5A DNA MER1_type 1 47 -142 914 196 158 47 chr3 121853057 121853183 -96183975 - L1ME2 LINE L1 -10 6154 6043 2276 125 0 0 chr3 121853183 121853488 -96183670 - AluSx SINE Alu -7 305 1 914 196 158 47 chr3 121853488 121853678 -96183480 - L1ME2 LINE L1 -121 6043 5803 446 76 15 0 chr3 121853718 121853784 -96183374 - AluSp/q SINE Alu -13 300 234 12013 170 51 88 chr3 121853789 121854305 -96182853 - L1 LINE L1 -2417 5148 4615 1787 151 49 0 chr3 121854305 121854590 -96182568 + AluSx SINE Alu 1 299 -13 12013 170 51 88 chr3 121854590 121854744 -96182414 - L1 LINE L1 -2950 4615 4457 2175 129 0 7 chr3 121854744 121855054 -96182104 - AluSx SINE Alu -4 308 1 12013 170 51 88 chr3 121855054 121855311 -96181847 - L1 LINE L1 -3108 4457 4192 1101 68 12 86 chr3 121855311 121855474 -96181684 - AluSq/x SINE Alu -161 152 2 12013 170 51 88 chr3 121855474 121855500 -96181658 - L1 LINE L1 -3373 4192 4167 2206 87 3 20 chr3 121855500 121855798 -96181360 - AluSg SINE Alu -17 293 1 12013 170 51 88 chr3 121855798 121855819 -96181339 - L1 LINE L1 -3398 4167 4147 1868 170 0 22 chr3 121855819 121856136 -96181022 + AluJb SINE Alu 3 312 0 12013 170 51 88 chr3 121856136 121857240 -96179918 - L1 LINE L1 -3418 4147 3004 2459 93 0 0 chr3 121857240 121857542 -96179616 - AluSc SINE Alu -7 302 1 12013 170 51 88 chr3 121857542 121860233 -96176925 - L1 LINE L1 -4561 3004 130 674 206 8 0 chr3 121860233 121860364 -96176794 - FLAM_C SINE Alu -11 132 1 271 159 352 0 chr3 121860364 121860452 -96176706 - L1 LINE L1 -7430 135 17 356 227 13 0 chr3 121860721 121860796 -96176362 - MLT1F1 LTR MaLR -456 111 36 2670 194 55 31 chr3 121860797 121860994 -96176164 - L1MD3 LINE L1 -888 7107 6916 366 42 0 0 chr3 121860994 121861042 -96176116 + (CA)n Simple_repeat Simple_repeat 2 49 0 2670 194 55 31 chr3 121861042 121861521 -96175637 - L1MD3 LINE L1 -1079 6916 6415 216 271 71 0 chr3 121861593 121861663 -96175495 + L2 LINE L2 3193 3267 -5 2218 107 0 3 chr3 121861894 121862193 -96174965 - AluSg SINE Alu -12 298 1 181 298 64 0 chr3 121862257 121862304 -96174854 - MER5A DNA MER1_type 0 189 140 515 260 0 8 chr3 121862325 121862448 -96174710 + L2 LINE L2 3192 3313 0 215 263 105 0 chr3 121862454 121862511 -96174647 - MER5B DNA MER1_type -99 79 17 2107 74 33 0 chr3 121862534 121862837 -96174321 + AluY SINE Alu 1 312 0 516 342 63 4 chr3 121862890 121863127 -96174031 + MIR SINE MIR 6 256 -6 467 340 77 43 chr3 121864418 121864681 -96172477 + L2 LINE L2 1525 1778 -1494 1909 153 0 3 chr3 121864681 121864982 -96172176 + AluSx SINE Alu 1 300 -12 467 340 77 43 chr3 121864982 121865221 -96171937 + L2 LINE L2 1778 3112 -160 1492 104 22 3 chr3 121865700 121865963 -96171195 - MER1B DNA MER1_type 0 339 42 236 216 81 54 chr3 121866415 121866489 -96170669 + L2 LINE L2 3237 3312 -1 254 361 56 0 chr3 121866924 121867032 -96170126 - L2 LINE L2 0 3272 3159 546 253 35 40 chr3 121867754 121867928 -96169230 + MER5B DNA MER1_type 6 178 0 1012 142 38 75 chr3 121868370 121868538 -96168620 + MER30 DNA MER1_type 1 159 -71 2173 110 3 3 chr3 121868538 121868837 -96168321 + AluSx SINE Alu 1 299 -13 1012 142 38 75 chr3 121868837 121868907 -96168251 + MER30 DNA MER1_type 159 230 0 352 298 91 97 chr3 121869828 121870164 -96166994 + L1M2 LINE L1 499 835 -6014 186 103 0 0 chr3 121870164 121870193 -96166965 + (CGG)n Simple_repeat Simple_repeat 1 29 0 352 298 91 97 chr3 121870193 121870544 -96166614 + L1M2 LINE L1 835 1252 -5597 397 107 0 27 chr3 121872136 121872211 -96164947 + (TTTCC)n Simple_repeat Simple_repeat 1 73 0 1137 183 60 13 chr3 121872211 121872446 -96164712 - AluJb SINE Alu -3 309 64 1949 92 82 14 chr3 121873164 121873456 -96163702 - AluSx SINE Alu 0 312 1 2101 91 13 27 chr3 121873456 121873754 -96163404 - AluSg SINE Alu -16 294 1 1517 148 49 62 chr3 121873856 121874160 -96162998 - AluJo SINE Alu -12 300 1 712 197 6 42 chr3 121874201 121874386 -96162772 - L1ME LINE L1 -571 5591 5413 2231 104 0 0 chr3 121874386 121874675 -96162483 + AluSq SINE Alu 1 289 -24 434 262 48 0 chr3 121874684 121874829 -96162329 - L1ME LINE L1 -816 5330 5179 21 0 0 0 chr3 121874829 121874850 -96162308 + AT_rich Low_complexity Low_complexity 1 21 0 638 167 9 0 chr3 121874857 121874971 -96162187 - Tigger1 DNA MER2_type 0 2418 2304 420 204 0 20 chr3 121874987 121875085 -96162073 + FLAM_A SINE Alu 44 139 -3 665 169 17 8 chr3 121875085 121875203 -96161955 + AluJb SINE Alu 183 301 -11 935 183 32 32 chr3 121875213 121875399 -96161759 + AluJo SINE Alu 2 187 -125 1683 118 19 11 chr3 121875499 121875769 -96161389 - L1PA16 LINE L1 -112 6054 5783 2300 114 0 3 chr3 121875985 121876292 -96160866 - AluSx SINE Alu -6 306 1 404 154 165 11 chr3 121876524 121876615 -96160543 - L1MC3 LINE L1 -26 7759 7655 633 129 101 119 chr3 121876621 121877003 -96160155 + L1MB7 LINE L1 5188 5553 -631 392 115 16 0 chr3 121877013 121877074 -96160084 - MLT1D LTR MaLR -76 429 368 891 187 70 79 chr3 121877085 121877464 -96159694 + MLT1B LTR MaLR 10 390 0 * 1197 182 96 69 chr3 121877464 121877825 -96159333 - MLT1D LTR MaLR -134 371 1 1718 232 61 25 chr3 121877825 121878395 -96158763 + L1MB7 LINE L1 5582 6172 -12 1659 219 138 15 chr3 121878443 121879383 -96157775 + L1ME1 LINE L1 5019 6145 -21 356 170 170 83 chr3 121879452 121879557 -96157601 + L1MEc LINE L1 2156 2250 -4146 2007 115 14 7 chr3 121879557 121879844 -96157314 - AluSx SINE Alu -23 289 1 356 170 170 83 chr3 121879844 121879956 -96157202 + L1MEc LINE L1 2250 2392 -4004 2205 118 0 3 chr3 121880059 121880364 -96156794 - AluY SINE Alu -7 304 1 5733 118 60 18 chr3 121880364 121881348 -96155810 - HSMAR2 DNA Mariner -57 1245 221 1326 188 0 5 chr3 121881352 121881570 -96155588 - AluJb SINE Alu -14 298 82 487 86 12 25 chr3 121881570 121881651 -96155507 - HSMAR2 DNA Mariner -1220 82 3 8428 106 22 3 chr3 121881661 121882953 -96154205 - Tigger1 DNA MER2_type -927 1491 176 5556 122 8 24 chr3 121882956 121883295 -96153863 + L1PA15 LINE L1 5128 5471 -694 1618 167 46 0 chr3 121883295 121883577 -96153581 - AluJb SINE Alu -17 295 1 5556 122 8 24 chr3 121883577 121883726 -96153432 + L1PA15 LINE L1 5471 5621 -544 2258 99 0 7 chr3 121883726 121884029 -96153129 + AluSg SINE Alu 1 301 -9 5556 122 8 24 chr3 121884029 121884587 -96152571 + L1PA15 LINE L1 5621 6160 -5 1830 149 7 10 chr3 121884882 121885178 -96151980 - AluJb SINE Alu -17 295 1 1111 152 0 0 chr3 121885233 121885417 -96151741 - Tigger1 DNA MER2_type -2233 185 2 619 244 20 76 chr3 121885427 121885730 -96151428 - L1ME2 LINE L1 -11 6153 5868 1579 187 14 25 chr3 121885755 121886039 -96151119 - AluJo SINE Alu -31 281 1 4498 203 86 99 chr3 121886051 121886191 -96150967 - L1ME2 LINE L1 -572 5594 5454 1800 153 28 0 chr3 121886191 121886473 -96150685 - AluJb SINE Alu -22 290 1 4498 203 86 99 chr3 121886473 121889142 -96148016 - L1ME2 LINE L1 -712 5454 2833 1003 83 23 0 chr3 121889167 121889299 -96147859 - AluSp/q SINE Alu -10 303 169 1234 106 122 5 chr3 121889318 121889507 -96147651 - AluSq SINE Alu -76 237 27 569 155 59 152 chr3 121889544 121889834 -96147324 - L1MA10 LINE L1 0 6334 6072 21 0 0 0 chr3 121889834 121889855 -96147303 + AT_rich Low_complexity Low_complexity 1 21 0 281 170 0 0 chr3 121889855 121889908 -96147250 - L1MB1 LINE L1 -71 6118 6066 255 133 0 117 chr3 121889915 121889949 -96147209 + L2 LINE L2 3219 3245 -27 1904 103 92 0 chr3 121889949 121890221 -96146937 - AluSp SINE Alu -16 297 1 255 133 0 117 chr3 121890221 121890246 -96146912 + L2 LINE L2 3245 3271 -1 2308 83 0 0 chr3 121890447 121890735 -96146423 - AluY SINE Alu -15 296 9 2081 136 10 7 chr3 121891831 121892140 -96145018 + AluSx SINE Alu 1 310 -2 265 304 43 0 chr3 121892414 121892483 -96144675 + L2 LINE L2 3209 3280 -33 1855 122 20 10 chr3 121893268 121893564 -96143594 + AluSx SINE Alu 1 299 -13 1346 206 61 81 chr3 121894133 121894639 -96142519 + MLT1F LTR MaLR 2 497 -45 2359 88 65 6 chr3 121900906 121901258 -96135900 + THE1C LTR MaLR 1 373 -2 189 74 0 0 chr3 121901675 121901702 -96135456 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 1472 169 55 33 chr3 121901717 121901990 -96135168 + AluJo SINE Alu 21 299 -13 2006 118 0 0 chr3 121902715 121902987 -96134171 + AluSg SINE Alu 39 310 0 1637 154 71 4 chr3 121903025 121903305 -96133853 - AluJb SINE Alu -13 299 1 614 295 139 0 chr3 121904876 121905120 -96132038 + L2 LINE L2 2152 2429 -885 2104 150 0 13 chr3 121905189 121905503 -96131655 - AluSx SINE Alu -2 310 1 244 167 51 13 chr3 121905503 121905581 -96131577 - L1M4 LINE L1 -2460 3686 3606 373 224 142 0 chr3 121905608 121905742 -96131416 - L1M4 LINE L1 -3658 2488 2336 805 163 7 14 chr3 121905747 121905894 -96131264 - AluY SINE Alu -4 307 162 228 308 126 25 chr3 121906549 121906741 -96130417 - L2 LINE L2 -1084 2230 2019 222 297 33 66 chr3 121906741 121906832 -96130326 + MER5B DNA MER1_type 2 97 -92 1832 132 13 20 chr3 121907171 121907474 -96129684 - AluSg SINE Alu -9 301 1 589 195 24 24 chr3 121908189 121908312 -96128846 - FLAM_A SINE Alu -10 123 1 393 303 67 0 chr3 121908469 121908588 -96128570 - MIR3 SINE MIR -48 160 34 721 238 29 6 chr3 121909157 121909329 -96127829 - MER20 DNA MER1_type 0 219 44 770 161 0 0 chr3 121909411 121909529 -96127629 + AluJb SINE Alu 1 118 -194 249 235 258 38 chr3 121909748 121909880 -96127278 + L2 LINE L2 2192 2352 -962 562 281 35 15 chr3 121910815 121911014 -96126144 + L1ME LINE L1 5511 5713 -408 661 197 136 19 chr3 121911639 121911852 -96125306 - Charlie5 DNA MER1_type -129 2483 2246 1696 172 0 45 chr3 121911856 121912164 -96124994 - AluJb SINE Alu -18 294 1 260 229 0 0 chr3 121912775 121912836 -96124322 - Charlie5 DNA MER1_type -2546 66 6 965 205 87 31 chr3 121913240 121913596 -96123562 + MER20B DNA MER1_type 368 743 -40 1172 182 10 0 chr3 121913746 121913964 -96123194 - AluJo SINE Alu 0 304 85 441 152 0 0 chr3 121913964 121914030 -96123128 - AluSp/q SINE Alu -63 250 185 1913 134 0 13 chr3 121915669 121915982 -96121176 + AluJb SINE Alu 2 310 -2 25 31 0 0 chr3 121917739 121917771 -96119387 + GC_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr3 121918492 121918516 -96118642 + GC_rich Low_complexity Low_complexity 1 24 0 387 0 0 0 chr3 121920752 121920795 -96116363 + (CA)n Simple_repeat Simple_repeat 1 43 0 297 250 42 14 chr3 121921178 121921250 -96115908 + L2 LINE L2 3237 3310 -3 209 262 148 16 chr3 121921544 121921605 -96115553 + MIR SINE MIR 25 93 -115 2021 119 0 10 chr3 121921706 121921999 -96115159 + AluY SINE Alu 21 310 -1 295 292 60 2 chr3 121922059 121922157 -96115001 + MIR SINE MIR 38 140 -68 26 30 0 0 chr3 121922207 121922240 -96114918 + AT_rich Low_complexity Low_complexity 1 33 0 249 206 19 47 chr3 121923136 121923243 -96113915 + (TA)n Simple_repeat Simple_repeat 1 104 0 22 35 0 0 chr3 121924122 121924151 -96113007 + AT_rich Low_complexity Low_complexity 1 29 0 339 293 37 37 chr3 121924211 121924375 -96112783 + L1ME LINE L1 4863 5026 -1120 322 318 80 37 chr3 121924622 121925109 -96112049 + L1ME LINE L1 5310 5817 -304 1287 176 0 5 chr3 121925182 121925398 -96111760 - AluJb SINE Alu -10 302 88 1822 152 6 37 chr3 121925730 121926052 -96111106 + AluJo SINE Alu 1 312 0 615 260 120 11 chr3 121926596 121926789 -96110369 + MIR SINE MIR 16 232 -30 1598 152 42 21 chr3 121926810 121927093 -96110065 + AluJb SINE Alu 1 289 -23 303 320 12 6 chr3 121927290 121927462 -96109696 - L1MC4a LINE L1 -1858 5950 5778 823 231 42 14 chr3 121927477 121927693 -96109465 - MIR SINE MIR -10 252 31 537 212 162 11 chr3 121927743 121927922 -96109236 - L1MC4a LINE L1 -2037 5771 5566 2382 93 0 3 chr3 121929352 121929653 -96107505 + AluSc SINE Alu 1 300 -9 2780 177 176 15 chr3 121929757 121930903 -96106255 - L1ME1 LINE L1 -4 6162 4833 25 31 0 0 chr3 121930921 121930953 -96106205 + AT_rich Low_complexity Low_complexity 1 32 0 46 68 0 0 chr3 121931039 121931127 -96106031 + AT_rich Low_complexity Low_complexity 1 88 0 397 297 14 36 chr3 121931312 121931450 -96105708 - L2 LINE L2 -6 3307 3173 2332 94 7 3 chr3 121931935 121932234 -96104924 + AluY SINE Alu 1 300 -11 2148 123 0 0 chr3 121932275 121932568 -96104590 + AluSc SINE Alu 1 293 -16 856 157 0 15 chr3 121932594 121932728 -96104430 - FLAM_A SINE Alu 0 133 2 2152 112 3 0 chr3 121932943 121933237 -96103921 + AluSp SINE Alu 1 295 -18 2264 95 3 0 chr3 121933359 121933653 -96103505 + AluSp SINE Alu 1 295 -18 2195 106 3 0 chr3 121933775 121934068 -96103090 + AluSp SINE Alu 1 294 -19 348 309 173 0 chr3 121934312 121934474 -96102684 - L1ME LINE L1 -365 5756 5567 2246 85 17 7 chr3 121934580 121934875 -96102283 - AluY SINE Alu -13 298 1 457 208 75 35 chr3 121935149 121935322 -96101836 + MER104 DNA MER2_type 1 180 0 1939 136 27 3 chr3 121935446 121935740 -96101418 + AluJb SINE Alu 1 301 -11 256 115 0 11 chr3 121936263 121936316 -96100842 + Alu SINE Alu 1 38 -261 633 142 59 148 chr3 121936335 121936504 -96100654 + AluJb SINE Alu 148 301 -11 2029 112 39 3 chr3 121936821 121937107 -96100051 + AluSq SINE Alu 1 296 -17 2156 93 3 33 chr3 121937124 121937424 -96099734 + AluSx SINE Alu 1 291 -21 1483 187 65 34 chr3 121937571 121937771 -96099387 - MLT1A1 LTR MaLR -1 364 147 1761 189 10 10 chr3 121937771 121938083 -96099075 - AluJb SINE Alu 0 312 1 1483 187 65 34 chr3 121938083 121938235 -96098923 - MLT1A1 LTR MaLR -218 147 1 527 80 13 0 chr3 121938263 121938338 -96098820 + MADE1 DNA Mariner 5 80 0 194 366 59 10 chr3 121938463 121938564 -96098594 + MIR SINE MIR 151 256 -6 2152 127 10 0 chr3 121938575 121938875 -96098283 - AluSg SINE Alu -7 303 1 1985 113 25 7 chr3 121939148 121939432 -96097726 - AluSg1 SINE Alu -20 289 1 21 0 0 0 chr3 121939850 121939871 -96097287 + AT_rich Low_complexity Low_complexity 1 21 0 454 308 81 51 chr3 121939890 121940081 -96097077 - MLT1L LTR MaLR -120 495 288 2286 98 24 0 chr3 121940081 121940377 -96096781 - AluSx SINE Alu -9 303 1 454 308 81 51 chr3 121940377 121940520 -96096638 - MLT1L LTR MaLR -327 288 151 1792 157 14 4 chr3 121941518 121941838 -96095320 - AluSx SINE Alu 0 323 1 1861 131 0 4 chr3 121941884 121942151 -96095007 + AluSx SINE Alu 1 266 -46 2390 68 0 10 chr3 121942536 121942846 -96094312 - AluY SINE Alu -4 307 1 612 294 33 15 chr3 121943102 121943374 -96093784 - LTR16A LTR ERVL -79 371 95 239 274 142 28 chr3 121943396 121943502 -96093656 - L2 LINE L2 -262 3051 2934 2448 67 0 3 chr3 121943555 121943852 -96093306 + AluY SINE Alu 1 296 -15 2413 82 0 7 chr3 121944043 121944347 -96092811 - AluSg SINE Alu -8 302 1 184 354 66 101 chr3 121944860 121945117 -96092041 + L2 LINE L2 3005 3252 -20 291 178 67 81 chr3 121945513 121945624 -96091534 - MIR SINE MIR -57 151 36 2295 111 7 0 chr3 121945643 121945949 -96091209 + AluSx SINE Alu 2 309 -3 343 346 88 26 chr3 121945951 121946179 -96090979 + L3 LINE CR1 1007 1248 -329 2174 134 0 0 chr3 121946339 121946637 -96090521 - AluSq SINE Alu -13 300 3 276 345 78 14 chr3 121946685 121946827 -96090331 - MIR SINE MIR -99 163 13 267 319 18 35 chr3 121946832 121946945 -96090213 + L3 LINE CR1 1464 1574 -3 1887 133 7 36 chr3 121947187 121947496 -96089662 + AluJb SINE Alu 2 301 -11 777 281 89 35 chr3 121948421 121948584 -96088574 - L2 LINE L2 -129 3184 3031 1455 225 18 0 chr3 121948584 121948869 -96088289 + AluJb SINE Alu 2 291 -21 777 281 89 35 chr3 121948869 121949093 -96088065 - L2 LINE L2 -282 3031 2779 1843 154 0 14 chr3 121949217 121949530 -96087628 + AluSx SINE Alu 1 309 0 943 159 0 0 chr3 121949530 121949668 -96087490 + AluJo/FRAM SINE Alu 131 268 -44 22 0 0 0 chr3 121949674 121949696 -96087462 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr3 121949811 121949844 -96087314 + AT_rich Low_complexity Low_complexity 1 33 0 233 171 0 0 chr3 121950279 121950314 -96086844 + L2 LINE L2 3222 3256 -16 22 0 0 0 chr3 121950946 121950968 -96086190 + AT_rich Low_complexity Low_complexity 1 22 0 1290 65 0 12 chr3 121950968 121951138 -96086020 - L1PA8 LINE L1 -6 6166 5999 2061 120 7 7 chr3 121952345 121952644 -96084514 + AluSx SINE Alu 1 299 -13 239 242 0 67 chr3 121953590 121953652 -96083506 - L1MC4a LINE L1 -1833 5975 5910 471 113 0 0 chr3 121953652 121953723 -96083435 + (TA)n Simple_repeat Simple_repeat 1 71 0 2014 101 0 4 chr3 121953725 121953993 -96083165 - AluSg1 SINE Alu -4 305 39 239 242 0 67 chr3 121953993 121954047 -96083111 - L1MC4a LINE L1 -1899 5909 5864 496 282 189 6 chr3 121954229 121954485 -96082673 - L1MC4a LINE L1 -1953 5832 5532 2213 209 63 13 chr3 121954677 121955232 -96081926 + MER119 DNA MER1_type 1 583 0 2253 102 0 0 chr3 121956269 121956562 -96080596 + AluSg SINE Alu 1 293 -17 1103 171 22 113 chr3 121956717 121956991 -96080167 - AluJo SINE Alu -43 269 21 609 165 16 31 chr3 121957035 121957162 -96079996 - FLAM_A SINE Alu 0 142 18 26 30 0 0 chr3 121957257 121957290 -96079868 + AT_rich Low_complexity Low_complexity 1 33 0 2071 130 3 19 chr3 121957942 121958257 -96078901 - AluJb SINE Alu -2 310 1 21 0 0 0 chr3 121958556 121958577 -96078581 + AT_rich Low_complexity Low_complexity 1 21 0 267 130 0 56 chr3 121958922 121958976 -96078182 - MADE1 DNA Mariner -29 51 1 198 71 0 0 chr3 121959079 121959107 -96078051 + (TC)n Simple_repeat Simple_repeat 1 28 0 1425 206 32 11 chr3 121959109 121959390 -96077768 - AluJo SINE Alu -25 287 1 2042 116 3 46 chr3 121959499 121959826 -96077332 - AluSq SINE Alu 0 313 1 2070 125 3 3 chr3 121960228 121960525 -96076633 - AluSq SINE Alu -16 297 1 22 0 0 0 chr3 121960686 121960708 -96076450 + AT_rich Low_complexity Low_complexity 1 22 0 1807 115 21 100 chr3 121961165 121961505 -96075653 + AluYb8 SINE Alu 1 313 -5 942 271 135 29 chr3 121961762 121962287 -96074871 - HAL1b LINE L1 -547 801 221 348 297 0 0 chr3 121963323 121963441 -96073717 - L1MC4a LINE L1 -1974 5834 5717 1849 166 10 3 chr3 121963518 121963813 -96073345 - AluJo SINE Alu -15 297 1 226 260 39 19 chr3 121963979 121964083 -96073075 - L1MC4 LINE L1 -13 8029 7924 2249 106 0 25 chr3 121964220 121964540 -96072618 - AluSx SINE Alu 0 312 1 247 293 157 50 chr3 121965127 121965267 -96071891 - MIR SINE MIR -59 203 49 615 269 90 35 chr3 121965658 121965948 -96071210 - MLT1J1 LTR MaLR -132 314 9 222 366 20 10 chr3 121966491 121966592 -96070566 - MER5B DNA MER1_type 0 178 77 45 45 0 0 chr3 121966594 121966660 -96070498 + AT_rich Low_complexity Low_complexity 1 66 0 21 36 0 0 chr3 121966775 121966803 -96070355 + AT_rich Low_complexity Low_complexity 1 28 0 2271 112 0 3 chr3 121968111 121968414 -96068744 - AluSq SINE Alu -11 302 1 2054 120 3 17 chr3 121968434 121968733 -96068425 - AluSx SINE Alu -17 295 1 2144 112 24 0 chr3 121969035 121969329 -96067829 + AluSx SINE Alu 1 301 -11 31 26 0 0 chr3 121969720 121969758 -96067400 + AT_rich Low_complexity Low_complexity 1 38 0 218 321 95 0 chr3 121969915 121969999 -96067159 + MIR SINE MIR 30 121 -87 697 294 127 36 chr3 121970284 121971127 -96066031 + L1M4 LINE L1 3662 4668 -1478 2294 91 0 7 chr3 121971127 121971425 -96065733 + AluSg SINE Alu 1 296 -14 697 294 127 36 chr3 121971425 121971899 -96065259 + L1M4 LINE L1 4668 5098 -1048 1811 175 0 14 chr3 121972050 121972342 -96064816 + AluJo SINE Alu 1 288 -24 43 56 0 0 chr3 121972353 121972424 -96064734 + AT_rich Low_complexity Low_complexity 1 71 0 2123 105 14 0 chr3 121973517 121973803 -96063355 - AluSc SINE Alu -19 290 1 2017 135 0 14 chr3 121973842 121974138 -96063020 - AluJb SINE Alu -18 294 3 2541 173 21 11 chr3 121974138 121974613 -96062545 + L1MB2 LINE L1 5691 6170 -1 1659 163 29 7 chr3 121975189 121975466 -96061692 - AluJb SINE Alu -26 286 4 1970 104 0 8 chr3 121976745 121977013 -96060145 - AluSc SINE Alu -10 299 34 1586 134 91 14 chr3 121977166 121977442 -96059716 + AluJb SINE Alu 1 297 -15 1381 75 11 21 chr3 121977634 121977820 -96059338 - AluSg/x SINE Alu -11 299 116 34 0 0 0 chr3 121978038 121978072 -96059086 + AT_rich Low_complexity Low_complexity 1 34 0 2254 108 3 7 chr3 121978245 121978551 -96058607 - AluSx SINE Alu -1 311 7 287 243 97 0 chr3 121978598 121978701 -96058457 + L1ME4a LINE L1 5772 5884 -237 2216 93 14 0 chr3 121978928 121979219 -96057939 + AluSx SINE Alu 1 295 -17 1000 107 0 0 chr3 121979566 121979697 -96057461 - AluSc SINE Alu -178 131 1 2266 93 3 20 chr3 121980073 121980373 -96056785 + AluSx SINE Alu 1 295 -17 2426 80 3 0 chr3 121981135 121981447 -96055711 - AluSp SINE Alu 0 313 1 22 0 0 0 chr3 121982321 121982343 -96054815 + AT_rich Low_complexity Low_complexity 1 22 0 1154 272 53 46 chr3 121983865 121984340 -96052818 - LTR16C LTR ERVL -3 488 11 2091 121 17 7 chr3 121984399 121984697 -96052461 + AluSx SINE Alu 3 303 -9 506 234 159 0 chr3 121984854 121984999 -96052159 - MIR3 SINE MIR -33 175 8 2034 124 10 7 chr3 121985154 121985444 -96051714 - AluSx SINE Alu -18 294 4 995 173 0 0 chr3 121985455 121985617 -96051541 - AluJo/FRAM SINE Alu -17 295 134 2171 112 6 16 chr3 121985617 121985929 -96051229 - AluSx SINE Alu -3 309 1 2737 183 118 45 chr3 121986083 121986795 -96050363 + L1ME3A LINE L1 5239 6023 -147 2277 110 3 0 chr3 121986795 121987096 -96050062 + AluSx SINE Alu 1 302 -10 2737 183 118 45 chr3 121987096 121987251 -96049907 + L1ME3A LINE L1 6023 6165 -5 369 229 56 59 chr3 121987692 121987837 -96049321 + MER5A DNA MER1_type 4 161 -28 2272 91 0 7 chr3 121987903 121988201 -96048957 + AluSc SINE Alu 1 296 -13 1450 189 0 16 chr3 121988650 121988899 -96048259 + AluJo SINE Alu 1 245 -67 2331 83 3 7 chr3 121988908 121989210 -96047948 - AluSp SINE Alu -11 302 2 422 323 104 48 chr3 121989330 121989742 -96047416 - LTR16A LTR ERVL -2 448 14 344 200 36 9 chr3 121989876 121989986 -96047172 - MER113 DNA MER1_type? -408 113 1 889 133 0 16 chr3 121990043 121990171 -96046987 + FLAM_C SINE Alu 1 126 -17 2155 125 3 16 chr3 121990177 121990489 -96046669 + AluSg SINE Alu 1 308 -2 1032 156 0 33 chr3 121990682 121990862 -96046296 - AluJb SINE Alu -2 310 137 1158 233 66 62 chr3 121990903 121991358 -96045800 + LTR16A1 LTR ERVL 1 457 0 2115 125 30 0 chr3 121991500 121991797 -96045361 + AluSq SINE Alu 1 306 -7 1998 162 0 0 chr3 121991809 121992106 -96045052 + AluSx SINE Alu 1 297 -15 2430 84 3 0 chr3 121992106 121992414 -96044744 + AluY SINE Alu 1 310 -1 336 83 0 0 chr3 121992574 121992622 -96044536 + (TTCC)n Simple_repeat Simple_repeat 4 51 0 604 164 23 78 chr3 121992655 121992783 -96044375 - AluJo SINE Alu -103 209 89 1789 153 29 0 chr3 121992869 121993144 -96044014 - AluJo SINE Alu -9 303 21 1670 168 64 20 chr3 121993164 121993461 -96043697 - AluJo SINE Alu -2 310 1 1987 152 3 14 chr3 121993492 121993788 -96043370 - AluJb SINE Alu -19 293 1 23 0 0 0 chr3 121993897 121993920 -96043238 + AT_rich Low_complexity Low_complexity 1 23 0 2448 58 3 0 chr3 121994157 121994450 -96042708 - AluY SINE Alu -17 294 1 1876 121 21 25 chr3 121994936 121995242 -96041916 - AluSx SINE Alu 0 305 1 208 147 0 0 chr3 121995279 121995313 -96041845 + (TA)n Simple_repeat Simple_repeat 2 35 0 351 269 104 57 chr3 121995426 121995536 -96041622 - L1ME3 LINE L1 0 6162 6038 2250 125 0 0 chr3 121995536 121995839 -96041319 + AluSx SINE Alu 1 303 -9 351 269 104 57 chr3 121995839 121995921 -96041237 - L1ME3 LINE L1 -124 6038 5961 278 246 0 0 chr3 121996448 121996509 -96040649 - HAL1 LINE L1 -630 1877 1817 251 250 19 153 chr3 121996659 121996728 -96040430 - HAL1 LINE L1 -2091 416 339 1985 122 41 3 chr3 121996728 121997022 -96040136 + AluSx SINE Alu 1 305 -7 251 250 19 153 chr3 121997022 121997168 -96039990 - HAL1 LINE L1 -2168 339 230 390 257 179 0 chr3 121997303 121997443 -96039715 - HAL1 LINE L1 -2315 192 28 426 20 0 0 chr3 121997445 121997496 -96039662 + (CA)n Simple_repeat Simple_repeat 2 52 0 569 182 36 9 chr3 121997505 121997615 -96039543 - FLAM_C SINE Alu -19 124 12 194 296 68 23 chr3 121997956 121998044 -96039114 + L2 LINE L2 211 302 -3012 1953 105 3 14 chr3 121998044 121998329 -96038829 - AluSx SINE Alu -16 296 15 435 144 34 119 chr3 121998429 121998447 -96038711 + L2 LINE L2 336 354 -2960 1298 110 83 28 chr3 121998447 121998530 -96038628 + MER30 DNA MER1_type 1 78 -152 2202 78 4 4 chr3 121998530 121998833 -96038325 + AluSx SINE Alu 1 303 0 1298 110 83 28 chr3 121998833 121998966 -96038192 + MER30 DNA MER1_type 78 230 0 435 144 34 119 chr3 121998966 121999065 -96038093 + L2 LINE L2 354 443 -2871 1945 228 33 14 chr3 121999111 121999620 -96037538 + MLT1F LTR MaLR 12 530 -12 2169 280 78 25 chr3 121999628 122000268 -96036890 + L2 LINE L2 436 1122 -2192 1388 226 18 0 chr3 122000268 122000387 -96036771 + AluJb SINE Alu 1 116 -196 243 0 0 0 chr3 122000387 122000414 -96036744 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1388 226 18 0 chr3 122000414 122000577 -96036581 + AluJb SINE Alu 116 288 -24 2169 280 78 25 chr3 122000577 122000680 -96036478 + L2 LINE L2 1122 1218 -2096 396 177 159 0 chr3 122000719 122000832 -96036326 - L1MC4 LINE L1 -32 8010 7880 709 164 0 0 chr3 122000861 122000977 -96036181 - MER7A DNA MER2_type -1 345 230 1319 206 41 68 chr3 122000988 122001647 -96035511 - LTR9 LTR ERV1 -12 600 1 1188 158 47 39 chr3 122001647 122001881 -96035277 - MER7A DNA MER2_type -112 234 1 1391 169 55 65 chr3 122001884 122001948 -96035210 - L1MC4 LINE L1 -214 7828 7765 1793 146 39 4 chr3 122001948 122002228 -96034930 + AluSx SINE Alu 5 294 -18 1391 169 55 65 chr3 122002228 122002530 -96034628 - L1MC4 LINE L1 -277 7765 7466 310 250 0 11 chr3 122002533 122002625 -96034533 - L1MC4a LINE L1 -1906 5902 5812 * 4092 212 106 74 chr3 122002620 122003162 -96033996 - L1M4 LINE L1 -4948 1594 1071 1864 138 31 24 chr3 122003162 122003453 -96033705 - AluSx SINE Alu -18 294 2 4092 212 106 74 chr3 122003453 122003558 -96033600 - L1M4 LINE L1 -5471 1071 971 1211 142 73 4 chr3 122003558 122003805 -96033353 - L1MB3 LINE L1 -1 6182 5919 4092 212 106 74 chr3 122003805 122004231 -96032927 - L1M4 LINE L1 -5571 971 560 2297 100 13 0 chr3 122004231 122004261 -96032897 - AluSp SINE Alu 0 313 285 195 42 0 0 chr3 122004261 122004285 -96032873 + (TG)n Simple_repeat Simple_repeat 1 24 0 2297 100 13 0 chr3 122004285 122004563 -96032595 - AluSp SINE Alu -28 285 1 4092 212 106 74 chr3 122004563 122005030 -96032128 - L1M4 LINE L1 -5982 560 2 967 216 71 89 chr3 122005030 122005320 -96031838 - L1MC4a LINE L1 -1979 5829 5535 2183 109 3 0 chr3 122005320 122005605 -96031553 - AluSx SINE Alu -26 286 1 967 216 71 89 chr3 122005605 122005782 -96031376 - L1MC4a LINE L1 -2273 5535 5368 1949 133 10 23 chr3 122005782 122006082 -96031076 + AluSq SINE Alu 3 298 -15 967 216 71 89 chr3 122006082 122006187 -96030971 - L1MC4a LINE L1 -2440 5368 5263 181 182 0 0 chr3 122006189 122006222 -96030936 + L2 LINE L2 1206 1238 -2076 582 225 65 70 chr3 122006285 122006490 -96030668 + L2 LINE L2 1206 1409 -1905 2518 200 20 12 chr3 122006492 122006998 -96030160 - MER90 LTR ERV1 0 614 105 2359 112 0 0 chr3 122007107 122007419 -96029739 + AluSx SINE Alu 1 312 0 427 219 154 0 chr3 122007535 122007658 -96029500 - L1MC4 LINE L1 -62 7980 7839 250 267 0 0 chr3 122007690 122007750 -96029408 - L1MC4 LINE L1 -190 7852 7793 2254 95 0 0 chr3 122007752 122008069 -96029089 - AluSq SINE Alu 0 317 1 309 197 0 0 chr3 122008192 122008258 -96028900 + CT-rich Low_complexity Low_complexity 2 67 0 740 195 0 0 chr3 122008274 122008397 -96028761 - FLAM_C SINE Alu -20 123 1 3526 121 80 41 chr3 122008434 122008730 -96028428 - MER4B LTR ERV1 -2 608 325 1567 170 49 3 chr3 122008730 122008849 -96028309 + AluJb SINE Alu 1 113 -199 315 0 0 0 chr3 122008849 122008884 -96028274 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1567 170 49 3 chr3 122008884 122009052 -96028106 + AluJb SINE Alu 113 301 -11 3526 121 80 41 chr3 122009052 122009340 -96027818 - MER4B LTR ERV1 -285 325 1 2135 96 3 13 chr3 122009415 122009718 -96027440 + AluSq SINE Alu 1 300 -13 180 77 0 0 chr3 122009974 122010000 -96027158 + (CGGTG)n Simple_repeat Simple_repeat 4 29 0 320 304 69 0 chr3 122010799 122010901 -96026257 - L2 LINE L2 -14 3258 3150 272 283 61 0 chr3 122010906 122011005 -96026153 - MIR SINE MIR -102 160 56 419 216 23 0 chr3 122011008 122011096 -96026062 - LTR52 LTR ERVL -6 415 326 679 167 77 32 chr3 122011096 122011133 -96026025 - LTR52 LTR ERVL -55 366 332 2114 54 0 12 chr3 122011133 122011392 -96025766 - AluY SINE Alu -55 256 1 679 167 77 32 chr3 122011392 122011510 -96025648 - LTR52 LTR ERVL -89 332 204 264 147 221 29 chr3 122011510 122011578 -96025580 - HERVL74 LTR ERVL -2 3554 3474 1471 167 0 66 chr3 122011578 122011865 -96025293 + AluJo SINE Alu 1 268 -44 4844 185 34 43 chr3 122011908 122012402 -96024756 - HERVL74 LTR ERVL -1483 2089 1592 2301 98 0 25 chr3 122012402 122012720 -96024438 - AluSg SINE Alu 0 310 1 4844 185 34 43 chr3 122012720 122012831 -96024327 - HERVL74 LTR ERVL -1980 1592 1482 1502 227 3 3 chr3 122012831 122013126 -96024032 - AluJo SINE Alu -17 295 1 4844 185 34 43 chr3 122013126 122013605 -96023553 - HERVL74 LTR ERVL -2090 1482 975 946 177 25 49 chr3 122013607 122013810 -96023348 - HERVL74 LTR ERVL -2541 1015 818 2301 114 0 0 chr3 122013810 122014116 -96023042 + AluSx SINE Alu 1 306 -6 1983 145 0 37 chr3 122014182 122014506 -96022652 - AluJb SINE Alu 0 312 1 1821 105 86 4 chr3 122014620 122014887 -96022271 - AluSx SINE Alu -23 289 1 285 274 86 19 chr3 122014893 122015051 -96022107 - L1ME LINE L1 -341 5821 5649 406 297 47 28 chr3 122015054 122015266 -96021892 + L2 LINE L2 3098 3313 0 971 178 0 17 chr3 122015274 122015454 -96021704 + FRAM SINE Alu 1 174 -2 22 35 0 0 chr3 122016117 122016146 -96021012 + AT_rich Low_complexity Low_complexity 1 29 0 1884 141 43 20 chr3 122016539 122016656 -96020502 + AluJb SINE Alu 1 114 -198 189 0 0 0 chr3 122016656 122016677 -96020481 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 1884 141 43 20 chr3 122016677 122016863 -96020295 + AluJb SINE Alu 114 311 -1 2210 112 3 0 chr3 122017241 122017535 -96019623 - AluSq SINE Alu -18 295 1 438 271 205 7 chr3 122017745 122017896 -96019262 + MER5A DNA MER1_type 9 189 0 24 0 0 0 chr3 122018327 122018351 -96018807 + AT_rich Low_complexity Low_complexity 1 24 0 699 211 8 8 chr3 122018831 122018959 -96018199 + FLAM_A SINE Alu 1 128 -5 298 274 32 73 chr3 122019286 122019410 -96017748 + MIR SINE MIR 29 147 -115 25 0 0 0 chr3 122019626 122019651 -96017507 + AT_rich Low_complexity Low_complexity 1 25 0 1757 183 3 7 chr3 122019652 122019958 -96017200 + AluJo SINE Alu 1 305 -7 329 0 24 0 chr3 122020401 122020442 -96016716 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 6117 40 17 22 chr3 122020442 122021219 -96015939 - SVA Other Other -23 1363 591 2456 77 0 7 chr3 122021948 122022258 -96014900 - AluY SINE Alu -3 308 1 2215 117 10 0 chr3 122022666 122022974 -96014184 - AluSx SINE Alu -1 311 1 1030 119 12 6 chr3 122023020 122023203 -96013955 - AluSg/x SINE Alu 0 305 122 861 267 116 62 chr3 122023630 122024080 -96013078 + L1MEd LINE L1 12 485 -5634 527 239 56 97 chr3 122024133 122024619 -96012539 + L1MEd LINE L1 731 1196 -4923 1319 291 113 39 chr3 122024754 122025762 -96011396 - L2 LINE L2 -2 3311 1840 2062 124 3 0 chr3 122026186 122026497 -96010661 + AluSp SINE Alu 1 312 0 2193 123 3 3 chr3 122026578 122026886 -96010272 + AluSx SINE Alu 1 308 -4 1400 121 5 0 chr3 122027054 122027252 -96009906 - AluSg/x SINE Alu -21 291 93 1103 113 7 0 chr3 122027352 122027502 -96009656 - AluSq/x SINE Alu -162 151 1 1828 169 17 0 chr3 122027507 122027803 -96009355 - AluJb SINE Alu -11 301 1 4532 217 70 38 chr3 122027867 122028044 -96009114 - L1M4 LINE L1 -2001 4145 3975 2473 61 0 3 chr3 122028044 122028341 -96008817 - AluY SINE Alu -15 296 1 4532 217 70 38 chr3 122028341 122028898 -96008260 - L1M4 LINE L1 -2171 3975 3437 1913 116 0 85 chr3 122028898 122029060 -96008098 - AluSx SINE Alu -12 300 179 2181 119 0 3 chr3 122029060 122029362 -96007796 - AluSc SINE Alu -8 301 1 1913 116 0 85 chr3 122029362 122029527 -96007631 - AluSx SINE Alu -133 179 1 4532 217 70 38 chr3 122029527 122030200 -96006958 - L1M4 LINE L1 -2709 3437 2692 255 237 40 0 chr3 122030293 122030369 -96006789 + L1MB7 LINE L1 3422 3500 -2646 * 878 233 5 11 chr3 122030350 122030597 -96006561 + L1MB7 LINE L1 3427 3671 -2475 * 3591 202 35 19 chr3 122030591 122030697 -96006461 + L1MB7 LINE L1 4314 4417 -1729 2253 106 0 3 chr3 122030697 122030989 -96006169 - AluSg SINE Alu -19 291 1 3591 202 35 19 chr3 122030989 122031353 -96005805 + L1MB7 LINE L1 4417 4774 -1372 2298 105 3 6 chr3 122031353 122031667 -96005491 + AluSq SINE Alu 1 313 0 3591 202 35 19 chr3 122031667 122032027 -96005131 + L1MB7 LINE L1 4774 5158 -988 992 168 6 0 chr3 122032038 122032205 -96004953 + FAM SINE Alu 1 41 -8 4511 159 40 44 chr3 122032206 122032466 -96004692 + L1MB7 LINE L1 5164 5424 -760 8096 102 5 18 chr3 122032466 122033552 -96003606 - MER11C LTR ERVK 0 1071 1 4511 159 40 44 chr3 122033552 122034310 -96002848 + L1MB7 LINE L1 5424 6165 -19 638 312 5 47 chr3 122034345 122034560 -96002598 - MLT-int LTR MaLR -437 1298 1093 873 228 91 0 chr3 122034564 122034783 -96002375 - MST-int LTR MaLR -1041 610 372 2203 101 3 10 chr3 122034786 122035082 -96002076 - AluSx SINE Alu -18 294 1 2119 187 25 2 chr3 122035204 122035611 -96001547 - MLT-int LTR MaLR -1318 417 2 1663 205 132 17 chr3 122035613 122036023 -96001135 - MSTB2 LTR MaLR 0 457 1 230 294 76 0 chr3 122036321 122036440 -96000718 - L1MEd LINE L1 -4938 1181 1054 2557 210 131 44 chr3 122036566 122037505 -95999653 - L1M4 LINE L1 -3312 3645 2789 2317 103 0 0 chr3 122037505 122037797 -95999361 - AluSg SINE Alu -18 292 1 2557 210 131 44 chr3 122037797 122037973 -95999185 - L1M4 LINE L1 -4168 2789 2630 1854 144 10 14 chr3 122037973 122038264 -95998894 - AluSx SINE Alu -22 290 1 2557 210 131 44 chr3 122038264 122038302 -95998856 - L1M4 LINE L1 -4327 2630 2429 2368 239 62 24 chr3 122038304 122039210 -95997948 - L1M4 LINE L1 -4719 2238 1188 235 254 55 36 chr3 122039265 122039375 -95997783 - L1M4 LINE L1 -5677 1178 1067 524 294 35 43 chr3 122039786 122040017 -95997141 - L1M4 LINE L1 -6620 239 11 3863 131 11 78 chr3 122040389 122040749 -95996409 + L1MA4 LINE L1 5614 5902 -398 1623 181 11 11 chr3 122040749 122041026 -95996132 + AluJo SINE Alu 2 278 -34 3863 131 11 78 chr3 122041026 122041400 -95995758 + L1MA4 LINE L1 5902 6299 -1 875 133 0 7 chr3 122041503 122041638 -95995520 + AluJo SINE Alu 1 134 -178 423 0 0 0 chr3 122041643 122041690 -95995468 + (CA)n Simple_repeat Simple_repeat 2 48 0 1759 159 0 36 chr3 122042050 122042168 -95994990 + AluJo SINE Alu 1 122 -190 2083 84 34 0 chr3 122042168 122042431 -95994727 + AluY SINE Alu 32 303 -8 1759 159 0 36 chr3 122042431 122042620 -95994538 + AluJo SINE Alu 122 297 -15 495 208 110 71 chr3 122043127 122043221 -95993937 + MER5A DNA MER1_type 30 134 -55 2296 114 0 0 chr3 122043221 122043527 -95993631 - AluSx SINE Alu -6 306 1 495 208 110 71 chr3 122043527 122043586 -95993572 + MER5A DNA MER1_type 134 189 0 1804 145 53 0 chr3 122044072 122044354 -95992804 - AluSq SINE Alu -16 297 1 481 325 212 21 chr3 122044404 122045080 -95992078 + L2 LINE L2 2455 3313 0 250 176 0 29 chr3 122046520 122046588 -95990570 + GA-rich Low_complexity Low_complexity 4 69 0 707 197 8 0 chr3 122046734 122046856 -95990302 - FLAM_A SINE Alu -10 123 1 3864 220 182 37 chr3 122046916 122047493 -95989665 - L1MC4 LINE L1 -141 7901 7409 2132 121 3 7 chr3 122047493 122047790 -95989368 - AluSq SINE Alu -17 296 1 3864 220 182 37 chr3 122047790 122048282 -95988876 - L1MC4 LINE L1 -633 7409 6990 186 43 0 0 chr3 122048282 122048305 -95988853 + (TCCA)n Simple_repeat Simple_repeat 3 25 0 3864 220 182 37 chr3 122048305 122048486 -95988672 - L1MC4 LINE L1 -1052 6990 6468 2398 91 0 0 chr3 122048635 122048942 -95988216 + AluSg SINE Alu 1 307 -3 2417 92 0 0 chr3 122049399 122049703 -95987455 - AluSq SINE Alu -9 304 1 316 234 125 23 chr3 122050187 122050367 -95986791 - L1M3 LINE L1 -359 5811 5619 625 275 89 42 chr3 122050397 122050633 -95986525 - MIR SINE MIR -9 253 7 2181 117 0 10 chr3 122050858 122051167 -95985991 - AluSx SINE Alu -6 306 1 2647 180 46 150 chr3 122052689 122052952 -95984206 + L1M4c LINE L1 2152 2441 -3941 2088 148 0 0 chr3 122052952 122053250 -95983908 + AluJo SINE Alu 1 298 -14 2647 180 46 150 chr3 122053250 122053574 -95983584 + L1M4c LINE L1 2441 2797 -3585 767 154 0 8 chr3 122053574 122053691 -95983467 + AluJb SINE Alu 3 118 -194 2647 180 46 150 chr3 122053691 122054261 -95982897 + L1M4c LINE L1 2797 3319 -3063 2565 45 6 22 chr3 122054261 122054574 -95982584 + AluY SINE Alu 1 308 -3 2647 180 46 150 chr3 122054574 122054586 -95982572 + L1M4c LINE L1 3319 3331 -3051 189 171 0 0 chr3 122054607 122054642 -95982516 + C-rich Low_complexity Low_complexity 2 36 0 405 244 53 0 chr3 122056342 122056473 -95980685 + L1M4c LINE L1 3309 3446 -2936 2378 90 0 0 chr3 122056489 122056788 -95980370 - AluSc SINE Alu -10 299 1 2025 113 20 14 chr3 122056795 122057087 -95980071 - AluSx SINE Alu -6 306 13 1533 194 0 55 chr3 122057679 122057841 -95979317 - AluJo SINE Alu -19 293 155 2153 129 3 10 chr3 122057841 122058152 -95979006 - AluSx SINE Alu -3 309 1 1533 194 0 55 chr3 122058152 122058299 -95978859 - AluJo SINE Alu -157 155 1 681 224 149 45 chr3 122058519 122059047 -95978111 - HAL1 LINE L1 -777 1730 1258 2347 104 0 0 chr3 122059047 122059345 -95977813 - AluSx SINE Alu -14 298 1 1897 144 10 3 chr3 122059348 122059640 -95977518 - AluJb SINE Alu -18 294 1 681 224 149 45 chr3 122059640 122060532 -95976626 - HAL1 LINE L1 -1250 1257 19 364 295 64 35 chr3 122060533 122060706 -95976452 + L2 LINE L2 1824 2001 -1313 1267 171 4 0 chr3 122060789 122061023 -95976135 - L1MB7 LINE L1 -86 6098 5864 877 137 0 0 chr3 122061057 122061181 -95975977 + AluSq/x SINE Alu 1 124 -188 318 50 0 0 chr3 122061354 122061369 -95975789 + (TG)n Simple_repeat Simple_repeat 1 55 0 318 50 0 0 chr3 122061369 122061409 -95975749 + (TG)n Simple_repeat Simple_repeat 2 41 0 886 185 54 0 chr3 122061478 122061662 -95975496 + MLT1B LTR MaLR 197 390 0 2289 102 0 3 chr3 122062177 122062481 -95974677 - AluSg SINE Alu -7 303 1 349 299 119 22 chr3 122063004 122063138 -95974020 + MIR3 SINE MIR 16 162 -46 24 32 0 0 chr3 122063430 122063461 -95973697 + AT_rich Low_complexity Low_complexity 1 31 0 574 287 102 37 chr3 122065416 122065470 -95971688 - MIR SINE MIR -1 261 212 1322 408 11 11 chr3 122065470 122065753 -95971405 - MER7A DNA MER2_type -2692 346 63 2162 117 0 3 chr3 122065753 122066051 -95971107 + AluSq SINE Alu 1 297 -16 1322 408 11 11 chr3 122066051 122066115 -95971043 - MER7A DNA MER2_type -2974 64 1 574 287 102 37 chr3 122066115 122066276 -95970882 - MIR SINE MIR -50 212 32 778 244 100 7 chr3 122066334 122066604 -95970554 + L1MC4 LINE L1 6748 7042 -1000 2104 126 3 13 chr3 122066616 122066925 -95970233 + AluSg SINE Alu 1 306 -4 2211 107 3 31 chr3 122068477 122068795 -95968363 + AluSc SINE Alu 1 309 0 2107 108 20 3 chr3 122068808 122069104 -95968054 + AluSx SINE Alu 1 301 -11 208 184 26 0 chr3 122069173 122069211 -95967947 - L3 LINE CR1 -15 1562 1524 * 566 298 50 12 chr3 122069178 122069339 -95967819 - MIR3 SINE MIR -25 183 17 1676 136 45 16 chr3 122069610 122069918 -95967240 - L1MB7 LINE L1 -6 6178 5862 232 254 73 0 chr3 122070174 122070229 -95966929 - L2 LINE L2 0 3313 3255 330 326 109 11 chr3 122070765 122070940 -95966218 + MIR SINE MIR 6 197 -65 216 0 0 0 chr3 122071043 122071067 -95966091 + (TAA)n Simple_repeat Simple_repeat 2 25 0 2173 130 0 0 chr3 122071101 122071400 -95965758 - AluSx SINE Alu -13 299 1 21 89 0 0 chr3 122071521 122071577 -95965581 + AT_rich Low_complexity Low_complexity 1 56 0 333 250 21 79 chr3 122071892 122072032 -95965126 - L2 LINE L2 -2 3311 3180 21 0 0 0 chr3 122072813 122072834 -95964324 + AT_rich Low_complexity Low_complexity 1 21 0 520 312 41 9 chr3 122075041 122075259 -95961899 - L2 LINE L2 -1152 2162 1938 437 326 53 49 chr3 122075353 122075638 -95961520 - L2 LINE L2 -448 2866 2581 2368 86 0 0 chr3 122076896 122077188 -95959970 + AluSx SINE Alu 1 292 -20 363 187 88 0 chr3 122077697 122077788 -95959370 + MER94 DNA DNA 12 110 -24 397 357 16 8 chr3 122077818 122077944 -95959214 - L2 LINE L2 -31 3241 3115 1849 120 29 7 chr3 122078284 122078593 -95958565 - MER58B DNA MER1_type 0 341 26 2151 107 3 0 chr3 122078971 122079284 -95957874 - AluSx SINE Alu 0 312 1 1910 141 10 27 chr3 122079576 122079875 -95957283 - AluJo SINE Alu -18 294 1 21 0 0 0 chr3 122079875 122079896 -95957262 + AT_rich Low_complexity Low_complexity 1 21 0 213 208 83 0 chr3 122080088 122080136 -95957022 + L2 LINE L2 3203 3254 -18 2252 84 11 0 chr3 122081545 122081831 -95955327 + AluSp SINE Alu 9 297 -16 2254 167 42 22 chr3 122081885 122082266 -95954892 - L1MB7 LINE L1 -7 6177 5782 2180 97 10 3 chr3 122082266 122082556 -95954602 - AluSp SINE Alu -21 292 1 2254 167 42 22 chr3 122082556 122082672 -95954486 - L1MB7 LINE L1 -402 5782 5670 657 150 0 17 chr3 122082674 122082794 -95954364 - L1MB7 LINE L1 -575 5609 5492 1991 133 38 51 chr3 122082806 122083197 -95953961 - L1MA9 LINE L1 0 6312 5927 1559 239 52 4 chr3 122083197 122083715 -95953443 - L1M4 LINE L1 -2348 3798 3256 32 26 0 0 chr3 122083965 122084004 -95953154 + AT_rich Low_complexity Low_complexity 1 39 0 1742 141 38 24 chr3 122084076 122084367 -95952791 + AluJo SINE Alu 1 295 -17 1137 161 0 0 chr3 122084858 122085026 -95952132 + AluSx SINE Alu 1 168 -144 195 42 0 0 chr3 122085045 122085069 -95952089 + (A)n Simple_repeat Simple_repeat 1 24 0 722 279 57 0 chr3 122086345 122086589 -95950569 + MIR SINE MIR 2 259 -3 2026 222 76 15 chr3 122087750 122088367 -95948791 + L1ME3A LINE L1 5508 6162 -8 1715 151 47 34 chr3 122088481 122088779 -95948379 + AluJo SINE Alu 1 302 -10 195 243 54 122 chr3 122089137 122089215 -95947943 - L2 LINE L2 -170 3143 3078 2198 114 0 19 chr3 122089215 122089531 -95947627 - AluSx SINE Alu -2 310 1 195 243 54 122 chr3 122089531 122089600 -95947558 - L2 LINE L2 -235 3078 3006 2261 115 0 3 chr3 122090453 122090757 -95946401 + AluSx SINE Alu 1 303 -9 269 279 0 0 chr3 122090993 122091061 -95946097 + CT-rich Low_complexity Low_complexity 5 72 0 6265 134 24 24 chr3 122091136 122092090 -95945068 - L1MA4 LINE L1 -6 7732 6779 1453 181 17 38 chr3 122092090 122092377 -95944781 - AluJb SINE Alu -20 292 12 6265 134 24 24 chr3 122092377 122092470 -95944688 - L1MA4 LINE L1 -959 6779 6687 2373 143 36 21 chr3 122092470 122092891 -95944267 - MSTB1 LTR MaLR -2 430 4 6265 134 24 24 chr3 122092891 122093964 -95943194 - L1MA4 LINE L1 -1051 6687 5607 665 202 16 0 chr3 122093964 122094088 -95943070 - AluJb SINE Alu -186 126 1 552 156 10 0 chr3 122094088 122094184 -95942974 - L1MA4 LINE L1 -1971 5613 5517 6696 22 4 0 chr3 122094197 122095015 -95942143 - L1PA4 LINE L1 -1 6154 5334 6544 181 86 14 chr3 122095017 122096832 -95940326 - L1MA4 LINE L1 -2206 5378 3426 2698 234 60 20 chr3 122096837 122097692 -95939466 - L1MA4 LINE L1 -4314 3270 2382 1893 135 0 36 chr3 122097794 122098098 -95939060 - AluSx SINE Alu -19 293 1 1779 156 24 10 chr3 122098790 122099085 -95938073 - AluJo SINE Alu -11 301 3 29 60 0 0 chr3 122099120 122099170 -95937988 + AT_rich Low_complexity Low_complexity 1 50 0 2181 108 7 7 chr3 122100631 122100937 -95936221 - AluSq SINE Alu -7 306 1 16628 193 22 29 chr3 122101019 122102161 -95934997 - L1P4 LINE L1 -19 6787 5639 2074 156 7 3 chr3 122102161 122102468 -95934690 - AluJb SINE Alu -4 308 1 16628 193 22 29 chr3 122102468 122105306 -95931852 - L1P4 LINE L1 -1167 5639 2890 1851 117 64 0 chr3 122105306 122105606 -95931552 + AluY SINE Alu 3 319 0 16628 193 22 29 chr3 122105606 122107251 -95929907 - L1P4 LINE L1 -3916 2890 1235 485 336 29 13 chr3 122108192 122108499 -95928659 - L1MA4 LINE L1 -6525 1060 7 4087 183 30 0 chr3 122108643 122109350 -95927808 - L1MB3 LINE L1 -1 6182 5455 480 204 143 141 chr3 122111108 122111552 -95925606 + L1MC5 LINE L1 7456 7903 -58 2007 97 8 0 chr3 122111552 122111810 -95925348 - AluSg SINE Alu -14 296 37 480 204 143 141 chr3 122111810 122111825 -95925333 + L1MC5 LINE L1 7903 7916 -45 2280 101 3 10 chr3 122112625 122112931 -95924227 - AluSg SINE Alu -6 304 1 559 212 62 62 chr3 122112932 122113111 -95924047 - MIR SINE MIR -6 256 78 261 279 23 0 chr3 122113374 122113460 -95923698 + L1MC4 LINE L1 6613 6700 -1342 985 157 23 23 chr3 122114582 122114754 -95922404 - FRAM SINE Alu -7 169 1 365 274 68 0 chr3 122114771 122114888 -95922270 + Charlie8 DNA MER1_type 152 276 -2141 189 0 0 0 chr3 122115266 122115287 -95921871 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2570 73 0 0 chr3 122115611 122115914 -95921244 + AluSp SINE Alu 1 303 -10 314 207 0 0 chr3 122116128 122116186 -95920972 + MER116 DNA Mariner 17 74 -6 558 298 11 26 chr3 122116398 122116589 -95920569 - MER5A DNA MER1_type -1 188 1 395 239 46 0 chr3 122118428 122118537 -95918621 - L1MC4a LINE L1 -1882 5926 5813 518 245 74 12 chr3 122118574 122118737 -95918421 - L1MC4a LINE L1 -1876 5932 5760 248 222 0 0 chr3 122118869 122118923 -95918235 - HAL1 LINE L1 -630 1877 1824 873 251 59 46 chr3 122119117 122119222 -95917936 + L2 LINE L2 2126 2228 -1086 1387 177 146 12 chr3 122119222 122119544 -95917614 - MLT1A1 LTR MaLR 0 365 1 873 251 59 46 chr3 122119544 122119761 -95917397 + L2 LINE L2 2228 2452 -862 577 318 13 7 chr3 122119793 122119947 -95917211 + L2 LINE L2 3114 3268 -4 188 315 180 11 chr3 122120146 122120235 -95916923 - L2 LINE L2 -334 2979 2876 22 56 0 0 chr3 122122882 122122918 -95914240 + GC_rich Low_complexity Low_complexity 1 36 0 213 108 0 0 chr3 122122928 122122965 -95914193 + (CGGGG)n Simple_repeat Simple_repeat 3 39 0 21 0 0 0 chr3 122123118 122123139 -95914019 + GC_rich Low_complexity Low_complexity 1 21 0 32 26 0 0 chr3 122123199 122123238 -95913920 + GC_rich Low_complexity Low_complexity 1 39 0 2019 176 17 14 chr3 122125493 122125845 -95911313 - MLT1A1 LTR MaLR 0 365 13 8188 188 42 43 chr3 122125846 122127090 -95910068 - MLT1A1-int LTR MaLR -7 1728 486 2430 78 3 0 chr3 122127090 122127385 -95909773 + AluSp SINE Alu 1 296 -17 8188 188 42 43 chr3 122127385 122127871 -95909287 - MLT1A1-int LTR MaLR -1249 486 1 2257 167 19 6 chr3 122127871 122128231 -95908927 - MLT1A1 LTR MaLR 0 365 1 181 322 52 35 chr3 122128379 122128494 -95908664 + L2 LINE L2 2937 3053 -219 357 24 0 0 chr3 122130594 122130636 -95906522 + (TG)n Simple_repeat Simple_repeat 2 43 0 2251 104 0 17 chr3 122131196 122131493 -95905665 + AluSg SINE Alu 1 292 -18 280 237 108 21 chr3 122133274 122133367 -95903791 - L2 LINE L2 0 3272 3172 260 303 68 58 chr3 122134175 122134368 -95902790 + MIR SINE MIR 15 216 -46 1549 147 61 67 chr3 122138695 122139008 -95898150 + AluJb SINE Alu 1 311 -1 31 0 0 0 chr3 122140809 122140840 -95896318 + AT_rich Low_complexity Low_complexity 1 31 0 2439 117 12 24 chr3 122140970 122141152 -95896006 - L1M3f LINE L1 -4290 1038 855 2210 116 3 0 chr3 122141152 122141453 -95895705 - AluSx SINE Alu -10 302 1 2439 117 12 24 chr3 122141453 122141682 -95895476 - L1M3f LINE L1 -4473 855 632 207 167 0 0 chr3 122141682 122141718 -95895440 + CT-rich Low_complexity Low_complexity 2 37 0 546 275 353 8 chr3 122142319 122142679 -95894479 - L2 LINE L2 0 3313 2830 1843 158 22 19 chr3 122142810 122143121 -95894037 + AluSx SINE Alu 1 312 0 203 369 46 8 chr3 122143179 122143309 -95893849 + MIR SINE MIR 20 154 -108 425 264 48 60 chr3 122143492 122143659 -95893499 - MIR SINE MIR -26 236 72 1135 149 44 6 chr3 122143922 122144103 -95893055 + AluSg/x SINE Alu 81 268 -44 21 57 0 0 chr3 122144341 122144376 -95892782 + AT_rich Low_complexity Low_complexity 1 35 0 387 259 28 107 chr3 122144378 122144668 -95892490 + L1ME3A LINE L1 5903 6169 -1 470 199 6 17 chr3 122146812 122146935 -95890223 + MLT1H LTR MaLR 50 138 -271 376 184 73 81 chr3 122147037 122147173 -95889985 + MLT1J2 LTR MaLR 313 447 -3 821 111 8 0 chr3 122148892 122149009 -95888149 + L1PB4 LINE L1 6039 6156 0 639 264 25 10 chr3 122149054 122149255 -95887903 + L1MC3 LINE L1 6078 6281 -1504 4458 113 26 5 chr3 122149288 122150241 -95886917 - L1PA8 LINE L1 -453 5678 4707 3865 65 0 0 chr3 122150240 122150716 -95886442 + L1PA8 LINE L1 5676 6151 -21 * 2466 181 77 56 chr3 122150726 122151406 -95885752 + L1MC3 LINE L1 6304 6997 -788 2606 164 93 13 chr3 122151407 122151709 -95885449 + Tigger3b DNA MER2_type 1 354 -2674 2389 92 0 3 chr3 122151709 122152015 -95885143 + AluSp SINE Alu 1 305 -8 2606 164 93 13 chr3 122152015 122152176 -95884982 + Tigger3b DNA MER2_type 354 501 -730 9703 142 42 11 chr3 122152177 122153756 -95883402 + ERVL-B1 LTR ERVL 4131 5757 -7 2567 154 107 41 chr3 122153756 122154244 -95882914 + MLT2B1 LTR ERVL 1 520 0 1548 182 14 27 chr3 122154341 122154638 -95882520 - AluJo SINE Alu -19 293 1 213 219 0 0 chr3 122154807 122154848 -95882310 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 348 246 12 200 chr3 122154859 122155189 -95881969 - L2 LINE L2 -52 3220 2953 418 282 221 27 chr3 122156026 122156320 -95880838 + L2 LINE L2 1998 2348 -966 289 286 321 8 chr3 122156311 122156573 -95880585 + L2 LINE L2 2963 3306 -7 * 777 279 52 63 chr3 122157699 122158125 -95879033 + L1MC3 LINE L1 30 450 -5595 2523 245 34 58 chr3 122158398 122159446 -95877712 + L1MC3 LINE L1 614 1685 -5060 1148 186 42 137 chr3 122159446 122159877 -95877281 + MLT1B LTR MaLR 1 390 0 2523 245 34 58 chr3 122159877 122160425 -95876733 + L1MC3 LINE L1 1685 2244 -4501 607 246 0 0 chr3 122160425 122160539 -95876619 - FLAM_A SINE Alu -18 115 2 2523 245 34 58 chr3 122160539 122160606 -95876552 + L1MC3 LINE L1 2244 2311 -4434 2276 89 0 0 chr3 122160606 122160886 -95876272 + AluSg SINE Alu 3 282 -28 2523 245 34 58 chr3 122160886 122161051 -95876107 + L1MC3 LINE L1 2311 2585 -4160 1121 68 0 0 chr3 122161056 122161189 -95875969 + AluSg1 SINE Alu 1 133 -176 2107 112 13 3 chr3 122161189 122161492 -95875666 + AluSp SINE Alu 1 306 -7 341 290 29 0 chr3 122161492 122161630 -95875528 + L1MC3 LINE L1 2574 2715 -4030 2300 82 0 10 chr3 122161644 122161938 -95875220 - AluY SINE Alu -20 291 1 2819 230 60 39 chr3 122161951 122162546 -95874612 + L1MC3 LINE L1 2862 3490 -3074 1948 176 0 3 chr3 122162546 122162853 -95874305 + AluJo SINE Alu 1 306 -6 2819 230 60 39 chr3 122162853 122163316 -95873842 + L1MC3 LINE L1 3490 3942 -2622 2031 236 71 9 chr3 122163424 122164054 -95873104 + L1MC3 LINE L1 4261 4929 -1635 2090 237 59 7 chr3 122164055 122164511 -95872647 + L1 LINE L1 5 484 -5657 * 2487 147 46 8 chr3 122164509 122164603 -95872555 + L1 LINE L1 3526 3615 -2595 1399 51 0 0 chr3 122164603 122164778 -95872380 + L1PA4 LINE L1 5980 6154 -1 2487 147 46 8 chr3 122164778 122165159 -95871999 + L1 LINE L1 3615 4019 -2191 814 122 9 0 chr3 122165191 122165306 -95871852 + AluJb SINE Alu 3 118 -194 2651 207 56 90 chr3 122165308 122165636 -95871522 + L1MC3 LINE L1 5065 5403 -1161 2199 115 6 16 chr3 122165636 122165949 -95871209 + AluSx SINE Alu 1 310 -2 2651 207 56 90 chr3 122165949 122166616 -95870542 + L1MC3 LINE L1 5403 5098 -1466 1973 145 7 0 chr3 122166616 122166905 -95870253 - AluJo SINE Alu -7 305 15 2651 207 56 90 chr3 122166905 122167607 -95869551 + L1MC3 LINE L1 5097 5821 -743 2760 74 5 5 chr3 122167643 122168023 -95869135 - L1PA8A LINE L1 -456 5675 5296 31 44 0 0 chr3 122168411 122168456 -95868702 + AT_rich Low_complexity Low_complexity 1 45 0 645 211 0 0 chr3 122169641 122169764 -95867394 + FLAM_C SINE Alu 1 123 -20 22 0 0 0 chr3 122169851 122169873 -95867285 + AT_rich Low_complexity Low_complexity 1 22 0 2065 138 0 0 chr3 122171821 122172117 -95865041 + AluSx SINE Alu 1 296 -16 362 39 19 0 chr3 122172242 122172294 -95864864 + (TA)n Simple_repeat Simple_repeat 1 53 0 223 45 63 63 chr3 122173678 122173789 -95863369 + (TA)n Simple_repeat Simple_repeat 1 111 0 272 283 86 12 chr3 122174197 122174441 -95862717 + L1ME LINE L1 5084 5345 -801 3956 114 82 20 chr3 122174489 122175197 -95861961 - Tigger3(Golem) DNA MER2_type -1 3028 2277 603 222 0 0 chr3 122175188 122175296 -95861862 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 284 153 0 34 chr3 122175308 122175367 -95861791 + L1ME LINE L1 5384 5440 -681 589 209 68 42 chr3 122175382 122175573 -95861585 + L1ME LINE L1 5629 5824 -297 203 254 95 0 chr3 122175615 122175678 -95861480 - MER5B DNA MER1_type -33 145 77 210 294 73 55 chr3 122177229 122177338 -95859820 - L2 LINE L2 -4 3268 3158 536 171 191 13 chr3 122177810 122177877 -95859281 + MER112 DNA MER1_type 5 59 -201 180 0 0 0 chr3 122177877 122177897 -95859261 + (TG)n Simple_repeat Simple_repeat 2 21 0 536 171 191 13 chr3 122177897 122177981 -95859177 + MER112 DNA MER1_type 59 183 -77 2026 146 13 0 chr3 122178622 122178930 -95858228 + AluJb SINE Alu 1 312 0 194 245 0 19 chr3 122180321 122180374 -95856784 + MER5B DNA MER1_type 96 147 -31 224 268 0 18 chr3 122180379 122180435 -95856723 + MER5A DNA MER1_type 111 165 -24 345 338 44 38 chr3 122180492 122180652 -95856506 + L2 LINE L2 3112 3272 0 355 159 11 23 chr3 122181065 122181153 -95856005 - L1PB2 LINE L1 -2 6149 6063 500 167 56 9 chr3 122182063 122182171 -95854987 + MIR3 SINE MIR 81 193 -15 21 0 0 0 chr3 122182757 122182778 -95854380 + AT_rich Low_complexity Low_complexity 1 21 0 181 308 0 0 chr3 122183102 122183141 -95854017 + L2 LINE L2 3139 3177 -95 1308 92 0 22 chr3 122183344 122183529 -95853629 + L1PA8A LINE L1 5948 6128 -3 738 174 0 0 chr3 122183978 122184128 -95853030 - FLAM_A SINE Alu 0 150 1 420 99 0 28 chr3 122185324 122185395 -95851763 + MADE1 DNA Mariner 1 69 -11 218 244 0 0 chr3 122186160 122186201 -95850957 + polypurine Low_complexity Low_complexity 1 41 0 211 351 42 68 chr3 122186552 122186743 -95850415 - MIR SINE MIR -45 217 32 25 0 0 0 chr3 122187100 122187125 -95850033 + AT_rich Low_complexity Low_complexity 1 25 0 10545 30 9 0 chr3 122188482 122190516 -95846642 + L1PA4 LINE L1 4106 6152 -3 426 232 49 30 chr3 122190978 122191142 -95846016 - L1MC5 LINE L1 -103 7858 7692 2197 107 40 0 chr3 122192990 122193288 -95843870 + AluSg SINE Alu 1 310 0 1526 186 32 46 chr3 122193740 122193932 -95843226 + L1MC4a LINE L1 6228 6414 -1394 2622 52 0 0 chr3 122193932 122194241 -95842917 - AluY SINE Alu -2 309 1 1526 186 32 46 chr3 122194241 122194418 -95842740 + L1MC4a LINE L1 6414 6592 -1216 195 100 0 0 chr3 122194422 122194452 -95842706 + (TA)n Simple_repeat Simple_repeat 1 30 0 4669 210 43 51 chr3 122194465 122195840 -95841318 + L1MC4a LINE L1 6518 7807 -6 610 210 108 6 chr3 122198325 122198485 -95838673 - L1MC3 LINE L1 -463 7340 7184 21 82 0 0 chr3 122198651 122198700 -95838458 + AT_rich Low_complexity Low_complexity 1 49 0 234 138 17 52 chr3 122198745 122198803 -95838355 - Alu SINE Alu 0 302 247 610 210 108 6 chr3 122199058 122199218 -95837940 - L1MC3 LINE L1 -463 7340 7184 21 82 0 0 chr3 122199384 122199433 -95837725 + AT_rich Low_complexity Low_complexity 1 49 0 1205 102 0 23 chr3 122199474 122199650 -95837508 - AluSg/x SINE Alu -1 311 140 588 280 10 10 chr3 122199744 122199937 -95837221 - L1ME LINE L1 -397 5724 5532 563 280 103 68 chr3 122200592 122201046 -95836112 + L1ME LINE L1 5339 5808 -313 23 0 0 0 chr3 122202571 122202594 -95834564 + AT_rich Low_complexity Low_complexity 1 23 0 28 48 0 0 chr3 122203206 122203248 -95833910 + AT_rich Low_complexity Low_complexity 1 42 0 192 77 0 0 chr3 122203495 122203521 -95833637 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 1768 195 32 65 chr3 122203523 122204016 -95833142 - L1ME1 LINE L1 -5 6161 5685 1739 157 46 6 chr3 122204016 122204340 -95832818 + MER2 DNA MER2_type 1 337 -8 1320 234 9 3 chr3 122204341 122204642 -95832516 - L1ME1 LINE L1 -505 5661 5365 1327 164 14 0 chr3 122204673 122204880 -95832278 + Tigger3b DNA MER2_type 1 210 -1021 1500 59 0 20 chr3 122204881 122205085 -95832073 - L1PA11 LINE L1 -383 5785 5586 2633 79 35 0 chr3 122205085 122205446 -95831712 + L1PA11 LINE L1 5796 6174 0 5467 121 74 11 chr3 122205481 122205618 -95831540 + Tigger3b DNA MER2_type 198 325 -2703 1707 154 48 14 chr3 122205618 122205911 -95831247 + AluJo SINE Alu 1 303 -9 5467 121 74 11 chr3 122205911 122206746 -95830412 + Tigger3b DNA MER2_type 325 1231 0 1252 176 37 111 chr3 122206746 122207233 -95829925 - L1MEc LINE L1 -3611 2604 2191 497 241 0 7 chr3 122207214 122207351 -95829807 - L1ME1 LINE L1 -2116 4030 3895 * 853 309 86 63 chr3 122207516 122208072 -95829086 + L3 LINE CR1 1006 1574 -3 922 208 181 27 chr3 122208586 122208884 -95828274 - MER2 DNA MER2_type 0 344 1 1463 173 54 11 chr3 122209004 122209281 -95827877 + AluJo SINE Alu 5 293 -19 2550 49 0 13 chr3 122209441 122209748 -95827410 + AluY SINE Alu 1 303 -8 606 269 42 6 chr3 122210092 122210259 -95826899 - MIR3 SINE MIR -18 190 18 3467 163 23 72 chr3 122210852 122211578 -95825580 - LTR8 LTR ERV1 0 691 1 303 140 0 0 chr3 122211769 122211819 -95825339 + (TCCC)n Simple_repeat Simple_repeat 3 52 0 2109 65 47 29 chr3 122211821 122212122 -95825036 - AluSp SINE Alu 0 306 1 1556 159 100 4 chr3 122212126 122212397 -95824761 - AluJb SINE Alu -15 297 1 212 242 44 55 chr3 122212413 122212504 -95824654 - MIR SINE MIR -75 187 98 309 179 0 45 chr3 122212542 122212609 -95824549 + FLAM_A SINE Alu 70 133 0 1887 162 6 16 chr3 122212865 122213179 -95823979 - AluSx SINE Alu -1 311 1 1679 184 3 7 chr3 122213431 122213719 -95823439 + AluJo SINE Alu 1 287 -25 867 144 0 0 chr3 122213727 122213845 -95823313 + FLAM_C SINE Alu 1 118 -25 26 0 0 0 chr3 122213845 122213871 -95823287 + AT_rich Low_complexity Low_complexity 1 26 0 239 310 129 0 chr3 122214055 122214171 -95822987 - L2 LINE L2 -4 3309 3179 1181 181 3 105 chr3 122214377 122214681 -95822477 + AluJo SINE Alu 19 291 -21 744 253 34 44 chr3 122215403 122215700 -95821458 - L1MC5 LINE L1 -109 7852 7559 961 170 42 106 chr3 122215700 122216012 -95821146 + MER33 DNA MER1_type 32 323 -1 415 155 60 0 chr3 122216013 122216097 -95821061 - L1MC5 LINE L1 -624 7337 7249 1020 171 75 0 chr3 122216357 122216544 -95820614 + MER3 DNA MER1_type 5 205 -4 430 373 8 0 chr3 122217267 122217385 -95819773 + L2 LINE L2 3134 3252 -20 771 135 0 115 chr3 122217591 122217679 -95819479 + MER58A DNA MER1_type 1 65 -276 2184 141 0 0 chr3 122217679 122217984 -95819174 - AluSx SINE Alu -7 305 1 771 135 0 115 chr3 122217984 122218051 -95819107 + MER58A DNA MER1_type 65 138 -86 4399 91 95 39 chr3 122218061 122218955 -95818203 + Tigger3b DNA MER2_type 5 948 -284 1294 80 0 0 chr3 122219006 122219169 -95817989 - AluSc SINE Alu -7 302 140 903 141 86 133 chr3 122219174 122219429 -95817729 - MLT1B LTR MaLR -197 193 3 362 277 43 65 chr3 122219664 122219848 -95817310 + MLT1J LTR MaLR 1 180 -331 315 285 135 48 chr3 122219951 122220031 -95817127 + L1M4 LINE L1 3522 3594 -2552 2149 37 0 0 chr3 122220031 122220273 -95816885 + L1PA5 LINE L1 5912 6153 -1 315 285 135 48 chr3 122220273 122220399 -95816759 + L1M4 LINE L1 3594 3746 -2400 259 111 0 139 chr3 122220404 122220476 -95816682 + LTR66 LTR ERVL 394 455 -155 263 252 178 9 chr3 122220635 122220742 -95816416 - L2 LINE L2 -226 3087 2963 524 288 94 19 chr3 122220906 122221215 -95815943 + L1M4 LINE L1 4094 4425 -1721 287 276 32 11 chr3 122221214 122221334 -95815824 + L1M4 LINE L1 5450 5575 -587 * 1642 154 47 70 chr3 122221334 122221560 -95815598 - MSTB LTR MaLR 0 426 209 1875 126 14 0 chr3 122221560 122221838 -95815320 + AluSx SINE Alu 1 282 -30 1642 154 47 70 chr3 122221838 122221954 -95815204 - MSTB LTR MaLR -217 209 92 1001 178 81 0 chr3 122221946 122222120 -95815038 - MER1B DNA MER1_type -109 188 1 * 1675 131 21 106 chr3 122222423 122222752 -95814406 + AluYb8 SINE Alu 1 301 -17 209 250 80 60 chr3 122223926 122224026 -95813132 - MIR SINE MIR -55 207 106 2179 126 10 0 chr3 122225351 122225653 -95811505 - AluSx SINE Alu -7 305 1 330 191 128 11 chr3 122225851 122225945 -95811213 + MLT1L LTR MaLR 150 254 -361 500 270 50 31 chr3 122226057 122226279 -95810879 + MLT1L LTR MaLR 390 615 0 482 302 76 13 chr3 122226418 122226581 -95810577 + L3 LINE CR1 692 874 -703 2114 124 0 10 chr3 122226581 122226895 -95810263 + AluSx SINE Alu 1 311 -1 482 302 76 13 chr3 122226895 122226956 -95810202 + L3 LINE CR1 874 930 -647 978 296 50 35 chr3 122226956 122227390 -95809768 + LTR16A LTR ERVL 1 440 -10 2398 317 85 28 chr3 122227390 122228916 -95808242 + HERV16 LTR ERVL 1985 3628 -2136 2253 106 0 0 chr3 122229339 122229640 -95807518 - AluSq SINE Alu -12 301 1 735 306 0 0 chr3 122229762 122229935 -95807223 + HERV16 LTR ERVL 4171 4343 -1421 459 139 116 12 chr3 122230121 122230207 -95806951 - MLT1B LTR MaLR -275 115 21 1038 187 44 159 chr3 122230207 122230684 -95806474 - L1M4 LINE L1 -1248 4898 4477 3310 158 30 12 chr3 122230698 122231274 -95805884 - L1MB5 LINE L1 0 6174 5589 250 290 0 0 chr3 122231307 122231369 -95805789 + HERV16 LTR ERVL 4938 4999 -765 3493 157 16 39 chr3 122231591 122232158 -95805000 + MLT2B3 LTR ERVL 1 554 0 293 302 38 28 chr3 122232189 122232295 -95804863 + HERV16 LTR ERVL 4787 4893 -103 605 258 42 25 chr3 122232472 122232730 -95804428 + LTR16A LTR ERVL 122 423 -27 786 317 168 28 chr3 122232738 122232870 -95804288 + L3 LINE CR1 964 1076 -501 2327 93 0 0 chr3 122232870 122233161 -95803997 - AluY SINE Alu -20 291 1 786 317 168 28 chr3 122233161 122233565 -95803593 + L3 LINE CR1 1076 1575 -2 391 261 75 8 chr3 122234122 122234256 -95802902 + MLT1C LTR MaLR 3 145 -322 608 122 0 11 chr3 122234261 122234351 -95802807 + MLT1C LTR MaLR 377 465 -2 1890 157 10 102 chr3 122234871 122235273 -95801885 + MLT1A1 LTR MaLR 1 365 0 1008 105 0 0 chr3 122235333 122235466 -95801692 + AluSq/x SINE Alu 1 133 -180 314 274 106 26 chr3 122235499 122235612 -95801546 - MIR SINE MIR -67 141 20 465 224 17 52 chr3 122236809 122236835 -95800323 + L2 LINE L2 3200 3225 -88 2196 115 0 0 chr3 122236835 122237131 -95800027 - AluSq SINE Alu -17 296 1 465 224 17 52 chr3 122237131 122237220 -95799938 + L2 LINE L2 3225 3311 -2 381 268 177 24 chr3 122237772 122237936 -95799222 + MIR3 SINE MIR 9 197 -11 567 251 76 35 chr3 122238140 122238311 -95798847 + MIR SINE MIR 12 189 -73 1787 172 7 3 chr3 122238389 122238691 -95798467 - AluJo SINE Alu -9 303 1 2329 103 0 3 chr3 122238973 122239273 -95797885 + AluSq SINE Alu 1 299 -14 2194 110 0 7 chr3 122239432 122239740 -95797418 + AluSx SINE Alu 1 306 -6 295 296 68 0 chr3 122240144 122240232 -95796926 + L2 LINE L2 3193 3286 -27 7362 141 33 14 chr3 122240260 122241462 -95795696 - Tigger3b DNA MER2_type 0 1231 7 215 274 40 89 chr3 122242614 122242683 -95794475 - MIR SINE MIR -24 238 175 2036 128 0 0 chr3 122242683 122242993 -95794165 + AluSx SINE Alu 1 310 0 215 274 40 89 chr3 122242993 122243046 -95794112 - MIR SINE MIR -87 175 121 239 306 16 66 chr3 122243141 122243262 -95793896 - L2 LINE L2 -8 3264 3150 1702 115 0 0 chr3 122243398 122243616 -95793542 + AluSp SINE Alu 1 218 -95 1754 134 3 39 chr3 122243618 122243902 -95793256 + AluJo SINE Alu 30 303 -9 3313 233 94 26 chr3 122244265 122244722 -95792436 - L2 LINE L2 -1 3312 2888 1189 164 53 0 chr3 122244722 122244929 -95792229 + MER20 DNA MER1_type 1 218 -1 3313 233 94 26 chr3 122244929 122245680 -95791478 - L2 LINE L2 -425 2888 2014 362 208 104 28 chr3 122246422 122246528 -95790630 + MER103 DNA DNA 1 114 -52 221 309 22 36 chr3 122246572 122246711 -95790447 + L2 LINE L2 2538 2674 -640 1205 129 0 0 chr3 122246723 122246893 -95790265 - AluSg/x SINE Alu -9 303 134 455 257 185 9 chr3 122246917 122247139 -95790019 + L2 LINE L2 2717 2977 -337 402 249 138 74 chr3 122247133 122247350 -95789808 + L2 LINE L2 3082 3312 -1 * 559 230 16 8 chr3 122247394 122247520 -95789638 + L2 LINE L2 2014 2140 -1174 21 0 0 0 chr3 122248265 122248286 -95788872 + AT_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chr3 122248399 122248436 -95788722 + AT_rich Low_complexity Low_complexity 1 37 0 1649 184 10 10 chr3 122248735 122249029 -95788129 + AluJo SINE Alu 1 294 -18 2243 109 3 0 chr3 122249049 122249343 -95787815 + AluSx SINE Alu 1 295 -17 1641 257 109 38 chr3 122249361 122250250 -95786908 + L2 LINE L2 2351 3313 0 223 351 90 0 chr3 122251241 122251352 -95785806 - L2 LINE L2 0 3313 3193 234 362 115 28 chr3 122252309 122252779 -95784379 + L2 LINE L2 637 1147 -2167 916 139 0 0 chr3 122252801 122252930 -95784228 + FLAM_C SINE Alu 1 129 -14 249 259 146 38 chr3 122253177 122253389 -95783769 - L2 LINE L2 -1221 2093 1859 543 313 111 18 chr3 122253890 122254107 -95783051 + L2 LINE L2 3036 3272 0 459 290 215 42 chr3 122254371 122254706 -95782452 - L3 LINE CR1 -14 1563 1171 306 247 37 12 chr3 122255211 122255292 -95781866 - MER5B DNA MER1_type -60 118 36 2364 69 0 23 chr3 122255706 122256031 -95781127 + AluY SINE Alu 1 311 0 349 243 13 0 chr3 122256273 122256361 -95780797 + MER93a LTR ERV1 253 370 -32 239 0 32 0 chr3 122256361 122256392 -95780766 + (TAA)n Simple_repeat Simple_repeat 2 33 0 209 182 0 0 chr3 122257371 122257404 -95779754 + polypurine Low_complexity Low_complexity 4 36 0 430 307 70 2 chr3 122258637 122258828 -95778330 + MIR SINE MIR 2 211 -51 610 261 152 5 chr3 122259333 122259544 -95777614 + MIR SINE MIR 21 262 0 383 338 95 5 chr3 122259576 122259798 -95777360 - L1MEc LINE L1 -4137 2259 2018 2038 127 7 0 chr3 122259894 122260186 -95776972 - AluSx SINE Alu -18 294 1 206 237 0 34 chr3 122261457 122261516 -95775642 + GA-rich Low_complexity Low_complexity 4 60 0 425 241 0 0 chr3 122261747 122261826 -95775332 - Tigger7 DNA MER2_type -6 2581 2503 687 83 7 56 chr3 122261826 122261970 -95775188 + (TAGA)n Simple_repeat Simple_repeat 3 139 0 413 119 0 0 chr3 122261970 122262037 -95775121 - Tigger7 DNA MER2_type -88 2399 2333 * 2529 180 29 0 chr3 122262031 122262480 -95774678 - Tigger7 DNA MER2_type -2021 466 5 1991 160 0 3 chr3 122262920 122263233 -95773925 - AluJb SINE Alu 0 312 1 21 0 0 0 chr3 122263366 122263387 -95773771 + AT_rich Low_complexity Low_complexity 1 21 0 1936 151 16 26 chr3 122263443 122263754 -95773404 + AluJb SINE Alu 5 312 0 2192 138 0 0 chr3 122265288 122265599 -95771559 + AluSx SINE Alu 1 311 -1 201 308 158 25 chr3 122267734 122267854 -95769304 - L2 LINE L2 0 3272 3137 230 179 126 84 chr3 122268017 122268112 -95769046 - L2 LINE L2 -220 3052 2954 1969 148 0 20 chr3 122270121 122270424 -95766734 + AluSx SINE Alu 1 297 -15 4169 110 2 0 chr3 122270597 122271160 -95765998 - L1PA14 LINE L1 -2 6159 5596 709 150 43 7 chr3 122271496 122271636 -95765522 + L1MA4A LINE L1 6159 6303 0 24 0 0 0 chr3 122271913 122271937 -95765221 + AT_rich Low_complexity Low_complexity 1 24 0 447 358 111 49 chr3 122272209 122272663 -95764495 + L2 LINE L2 1979 2404 -910 2007 124 28 0 chr3 122272663 122272954 -95764204 - AluSx SINE Alu -13 299 1 447 358 111 49 chr3 122272954 122273373 -95763785 + L2 LINE L2 2404 2906 -408 1775 121 15 29 chr3 122273502 122273775 -95763383 - AluSx SINE Alu -10 302 34 268 333 10 0 chr3 122273983 122274082 -95763076 + L2 LINE L2 2068 2167 -1147 225 178 0 44 chr3 122274115 122274160 -95762998 + L2 LINE L2 3227 3269 -3 2043 142 0 6 chr3 122274723 122275034 -95762124 - AluSg SINE Alu -1 309 1 275 206 192 0 chr3 122275082 122275155 -95762003 - MER94 DNA DNA -41 93 7 201 333 7 35 chr3 122275227 122275368 -95761790 + L2 LINE L2 2031 2167 -1147 538 385 60 15 chr3 122275535 122275989 -95761169 + L2 LINE L2 2265 2738 -576 256 303 48 31 chr3 122276278 122276549 -95760609 - L1MC/D LINE L1 -659 5511 5256 314 281 82 46 chr3 122276572 122276622 -95760536 - L1MC/D LINE L1 -941 5205 5158 2036 138 17 0 chr3 122276622 122276920 -95760238 - AluSx SINE Alu -8 304 2 314 281 82 46 chr3 122276920 122277150 -95760008 - L1MC/D LINE L1 -988 5158 4915 1798 168 0 16 chr3 122277277 122277586 -95759572 - AluJb SINE Alu -5 307 4 321 252 7 91 chr3 122278712 122278829 -95758329 + MER46C DNA MER2_type 146 250 -88 2315 74 3 0 chr3 122278829 122279114 -95758044 - AluSp SINE Alu -11 302 17 321 252 7 91 chr3 122279114 122279139 -95758019 + MER46C DNA MER2_type 250 276 -62 333 219 129 0 chr3 122279150 122279258 -95757900 - L1ME3 LINE L1 -34 6136 6017 1717 136 0 0 chr3 122279738 122279974 -95757184 - MER46A DNA MER2_type 0 236 1 651 257 29 61 chr3 122280330 122280377 -95756781 - MIR SINE MIR -6 256 209 2312 92 14 0 chr3 122280377 122280672 -95756486 + AluSq SINE Alu 1 299 -14 651 257 29 61 chr3 122280672 122280869 -95756289 - MIR SINE MIR -53 209 20 616 151 0 0 chr3 122282475 122282561 -95754597 - AluJo SINE Alu -20 292 207 1378 154 0 0 chr3 122282647 122282855 -95754303 - AluJo SINE Alu -104 208 1 447 19 0 0 chr3 122283322 122283374 -95753784 + (CA)n Simple_repeat Simple_repeat 1 52 0 586 220 0 0 chr3 122283399 122283499 -95753659 - AluJ/FLAM SINE Alu -211 101 2 318 289 70 14 chr3 122283571 122283713 -95753445 - L1ME LINE L1 -364 5757 5608 1314 155 59 5 chr3 122284330 122284386 -95752772 - MER46A DNA MER2_type -2499 232 181 633 61 0 0 chr3 122284386 122284468 -95752690 + (TTG)n Simple_repeat Simple_repeat 3 84 0 1314 155 59 5 chr3 122284468 122284630 -95752528 - MER46A DNA MER2_type -2550 181 2 1835 102 0 0 chr3 122285171 122285415 -95751743 - AluSg/x SINE Alu -3 309 66 1450 125 136 42 chr3 122285453 122285717 -95751441 + AluJo SINE Alu 1 289 -23 763 254 67 38 chr3 122285720 122285960 -95751198 - MIR SINE MIR -10 252 6 306 296 26 26 chr3 122285939 122286054 -95751104 + MIR SINE MIR 108 222 -40 * 2426 81 0 0 chr3 122286326 122286623 -95750535 - AluSg SINE Alu -13 297 1 220 239 34 120 chr3 122287889 122288006 -95749152 + MIR3 SINE MIR 85 191 -17 2280 130 138 49 chr3 122288432 122288488 -95748670 - MSTB LTR MaLR 0 426 376 1959 71 0 16 chr3 122288488 122288740 -95748418 - AluY SINE Alu -8 303 56 2280 130 138 49 chr3 122288740 122289074 -95748084 - MSTB LTR MaLR -50 376 1 22 35 0 0 chr3 122289442 122289471 -95747687 + AT_rich Low_complexity Low_complexity 1 29 0 2508 142 98 3 chr3 122289671 122290058 -95747100 - MSTB LTR MaLR -2 424 1 200 315 56 0 chr3 122290115 122290223 -95746935 - MIR SINE MIR 0 262 149 894 224 147 9 chr3 122291456 122291688 -95745470 - Charlie8 DNA MER1_type -2152 265 2 2023 128 3 10 chr3 122291973 122292269 -95744889 + AluSx SINE Alu 7 300 -12 1984 157 21 48 chr3 122292442 122292770 -95744388 - MLT1A1 LTR MaLR 0 365 47 2272 95 0 7 chr3 122292770 122293065 -95744093 - AluSg SINE Alu -17 293 1 1984 157 21 48 chr3 122293065 122293111 -95744047 - MLT1A1 LTR MaLR -318 47 1 182 283 94 0 chr3 122295179 122295232 -95741926 - L3 LINE CR1 -2 1575 1518 207 0 0 0 chr3 122295538 122295561 -95741597 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 7236 69 16 1 chr3 122295663 122296619 -95740539 + L1PA8 LINE L1 5201 6169 -3 1420 218 97 62 chr3 122296723 122297028 -95740130 + L1MC5 LINE L1 7368 7702 -259 2301 88 7 0 chr3 122297028 122297324 -95739834 - AluSp SINE Alu -15 298 1 1420 218 97 62 chr3 122297324 122297563 -95739595 + L1MC5 LINE L1 7702 7931 -30 257 256 119 14 chr3 122297564 122297669 -95739489 + MIR SINE MIR 42 155 -86 379 236 41 57 chr3 122297858 122297981 -95739177 + LTR67 LTR ERVL 96 216 -341 254 280 8 68 chr3 122298044 122298162 -95738996 + LTR67 LTR ERVL 407 517 -40 894 150 0 0 chr3 122298307 122298434 -95738724 - FLAM_C SINE Alu -16 127 1 2082 141 3 3 chr3 122298451 122298757 -95738401 - AluSx SINE Alu -6 306 1 2437 148 30 28 chr3 122298841 122299223 -95737935 - L1MA4 LINE L1 -11 6289 5904 2909 13 0 0 chr3 122299223 122299539 -95737619 - AluYb8 SINE Alu -2 316 1 2437 148 30 28 chr3 122299539 122299590 -95737568 - L1MA4 LINE L1 -396 5904 5855 2090 131 0 10 chr3 122299717 122300029 -95737129 - AluSg SINE Alu -1 309 1 712 133 0 0 chr3 122300172 122300277 -95736881 + FRAM SINE Alu 67 171 -5 237 333 11 22 chr3 122300297 122300387 -95736771 - MIR3 SINE MIR -48 160 72 1874 136 19 42 chr3 122301609 122301748 -95735410 + AluSx SINE Alu 1 142 -170 2636 32 0 23 chr3 122301748 122302058 -95735100 + AluY SINE Alu 1 303 -8 1874 136 19 42 chr3 122302058 122302228 -95734930 + AluSx SINE Alu 142 303 -9 2877 81 28 8 chr3 122302327 122302684 -95734474 - THE1B LTR MaLR 0 364 1 181 222 83 56 chr3 122302818 122302890 -95734268 + L2 LINE L2 3179 3252 -61 452 293 6 32 chr3 122304543 122304700 -95732458 - MIR SINE MIR -27 235 83 297 276 46 81 chr3 122304982 122305053 -95732105 + MIR SINE MIR 35 107 -155 183 100 0 0 chr3 122305053 122305083 -95732075 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 2218 93 0 7 chr3 122305083 122305372 -95731786 - AluSp SINE Alu -26 287 1 297 276 46 81 chr3 122305372 122305473 -95731685 + MIR SINE MIR 105 202 -60 31 0 0 0 chr3 122305483 122305514 -95731644 + AT_rich Low_complexity Low_complexity 1 31 0 2420 84 7 0 chr3 122305808 122306116 -95731042 + AluSg SINE Alu 1 310 0 303 217 48 24 chr3 122306402 122306485 -95730673 + LTR33 LTR ERVL 1 85 -436 256 250 17 0 chr3 122307414 122307474 -95729684 - L2 LINE L2 0 3313 3253 25 0 0 0 chr3 122309910 122309935 -95727223 + AT_rich Low_complexity Low_complexity 1 25 0 367 240 64 56 chr3 122310003 122310128 -95727030 - MIR SINE MIR -113 149 24 2024 113 65 0 chr3 122310475 122310766 -95726392 + AluSx SINE Alu 1 310 -2 21 36 0 0 chr3 122310933 122310961 -95726197 + AT_rich Low_complexity Low_complexity 1 28 0 1460 151 20 67 chr3 122311677 122311976 -95725182 - AluJo SINE Alu -25 287 3 211 329 15 51 chr3 122312541 122312678 -95724480 + L2 LINE L2 2269 2400 -914 2128 121 3 3 chr3 122312754 122313052 -95724106 - AluSx SINE Alu -14 298 1 479 274 192 33 chr3 122313062 122313369 -95723789 - L2 LINE L2 0 3313 2958 1940 229 115 31 chr3 122313535 122314111 -95723047 + MLT1E3 LTR MaLR 1 624 0 199 243 135 0 chr3 122314159 122314233 -95722925 + L2 LINE L2 2806 2889 -424 937 209 24 24 chr3 122315423 122315633 -95721525 + MER63A DNA MER1_type 1 210 0 211 336 24 32 chr3 122315726 122315851 -95721307 - MIR SINE MIR -117 145 22 368 354 0 0 chr3 122315994 122316093 -95721065 - MER5A DNA MER1_type -30 159 61 878 150 28 74 chr3 122316095 122316405 -95720753 - L1PB1 LINE L1 0 6166 5896 601 301 30 49 chr3 122317105 122317371 -95719787 + MIR SINE MIR 2 262 0 220 258 16 16 chr3 122317481 122317543 -95719615 - L2 LINE L2 -1 3271 3210 * 1033 214 15 0 chr3 122317509 122317715 -95719443 - MIR SINE MIR -23 239 31 545 296 98 5 chr3 122317782 122317985 -95719173 + MIR SINE MIR 41 262 0 181 389 22 0 chr3 122318100 122318190 -95718968 + MIR SINE MIR 23 114 -94 303 28 0 0 chr3 122318365 122318401 -95718757 + (TG)n Simple_repeat Simple_repeat 1 36 0 329 261 117 78 chr3 122319570 122319750 -95717408 - MER91A DNA MER1_type -8 188 2 211 288 0 45 chr3 122319929 122319995 -95717163 + C-rich Low_complexity Low_complexity 4 66 0 549 277 147 5 chr3 122320038 122320262 -95716896 - MIR SINE MIR 0 262 7 1150 56 17 17 chr3 122320755 122320933 -95716225 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 2092 142 0 0 chr3 122320933 122321393 -95715765 - AluSx SINE Alu 0 460 1 375 226 144 120 chr3 122321786 122321860 -95715298 + Tigger8 DNA MER2_type 452 523 -143 2328 112 3 0 chr3 122321860 122322164 -95714994 + AluSp SINE Alu 1 305 -8 860 187 0 15 chr3 122322171 122322305 -95714853 + FLAM_A SINE Alu 2 133 0 498 196 28 9 chr3 122322313 122322420 -95714738 + L1MB7 LINE L1 6076 6184 0 375 226 144 120 chr3 122322420 122322536 -95714622 + Tigger8 DNA MER2_type 534 664 -2 297 222 192 0 chr3 122322725 122322824 -95714334 + MIR SINE MIR 145 262 0 250 281 16 0 chr3 122323040 122323104 -95714054 + GA-rich Low_complexity Low_complexity 6 70 0 180 217 0 0 chr3 122323359 122323405 -95713753 + CT-rich Low_complexity Low_complexity 2 47 0 227 273 0 0 chr3 122324104 122324157 -95713001 - MIR3 SINE MIR -3 205 153 324 261 228 0 chr3 122324157 122324249 -95712909 + MER5A DNA MER1_type 1 113 -76 1283 109 0 16 chr3 122324270 122324453 -95712705 - AluSp SINE Alu 0 313 134 649 246 76 33 chr3 122326566 122326777 -95710381 - MIR SINE MIR 0 262 43 265 321 71 0 chr3 122327411 122327495 -95709663 - MIR SINE MIR -79 183 94 292 284 40 0 chr3 122327495 122327569 -95709589 - MIR SINE MIR -136 126 50 2237 111 20 0 chr3 122327984 122328290 -95708868 + AluSx SINE Alu 1 312 0 444 231 11 0 chr3 122328583 122328674 -95708484 - Charlie4 DNA MER1_type -1679 282 191 1024 81 0 22 chr3 122328720 122328856 -95708302 + AluSg/x SINE Alu 172 304 -6 528 225 99 0 chr3 122328863 122329014 -95708144 - Charlie4 DNA MER1_type -1764 197 32 211 239 22 0 chr3 122329186 122329232 -95707926 + MIR SINE MIR 105 151 -57 2318 94 17 0 chr3 122329385 122329683 -95707475 - AluSq SINE Alu -10 303 1 1948 156 109 11 chr3 122329721 122330079 -95707079 + MSTD LTR MaLR 4 396 0 188 288 50 25 chr3 122330100 122330180 -95706978 - MER5A DNA MER1_type 0 189 108 222 152 43 22 chr3 122330247 122330293 -95706865 + MIR3 SINE MIR 157 203 -5 274 279 91 91 chr3 122331339 122331547 -95705611 + MLT1K LTR MaLR 373 580 -8 414 309 108 50 chr3 122331842 122331954 -95705204 + MLT1J LTR MaLR 110 214 -297 207 0 0 0 chr3 122331954 122331977 -95705181 + (TC)n Simple_repeat Simple_repeat 1 23 0 414 309 108 50 chr3 122331977 122332242 -95704916 + MLT1J LTR MaLR 214 509 -2 268 114 0 0 chr3 122332960 122332995 -95704163 + U2 snRNA snRNA 1 35 -153 207 325 80 53 chr3 122333798 122333949 -95703209 - L2 LINE L2 -2 3270 3116 224 255 0 0 chr3 122334048 122334099 -95703059 + T-rich Low_complexity Low_complexity 1 51 0 1055 313 43 26 chr3 122335586 122336078 -95701080 - L2 LINE L2 0 3313 2814 456 245 14 61 chr3 122336091 122336238 -95700920 + MIR SINE MIR 24 163 -99 618 99 10 30 chr3 122336238 122336339 -95700819 - MSTC LTR MaLR 0 428 330 439 302 79 82 chr3 122336366 122336442 -95700716 + MER115 DNA AcHobo 9 84 -609 2510 142 6 8 chr3 122336442 122336808 -95700350 + MLT1A1 LTR MaLR 1 365 0 439 302 79 82 chr3 122336808 122337036 -95700122 + MER115 DNA AcHobo 84 312 -381 859 275 42 56 chr3 122337070 122337357 -95699801 + MER115 DNA AcHobo 411 693 0 23 68 0 0 chr3 122337582 122337626 -95699532 + AT_rich Low_complexity Low_complexity 1 44 0 369 177 38 25 chr3 122338419 122338498 -95698660 + MIR SINE MIR 123 202 -60 1027 184 5 34 chr3 122338502 122338709 -95698449 - MER20 DNA MER1_type -15 204 4 191 120 0 0 chr3 122338714 122338739 -95698419 + L2 LINE L2 3215 3239 -33 1911 147 0 24 chr3 122339812 122340105 -95697053 + AluJo SINE Alu 11 296 -16 698 226 45 40 chr3 122340338 122340537 -95696621 - MIR SINE MIR -56 206 7 739 259 110 21 chr3 122343351 122343587 -95693571 - MIR SINE MIR -1 261 5 204 135 0 0 chr3 122343643 122343680 -95693478 + (TAA)n Simple_repeat Simple_repeat 2 38 0 1913 182 62 19 chr3 122343779 122344153 -95693005 + MLT1B LTR MaLR 1 390 0 819 131 0 0 chr3 122346087 122346209 -95690949 - AluSx SINE Alu -1 308 187 2545 166 21 0 chr3 122346209 122346632 -95690526 - L1MB3 LINE L1 -248 6171 5740 4495 166 39 39 chr3 122346646 122348154 -95689004 - L1MB3 LINE L1 -3231 3151 1649 1196 194 0 5 chr3 122348154 122348350 -95688808 - AluSx SINE Alu -117 195 1 3812 166 55 21 chr3 122348350 122349167 -95687991 - L1MB3 LINE L1 -4730 1654 810 1166 161 28 32 chr3 122349167 122349385 -95687773 - AluJo SINE Alu -15 297 81 4181 174 46 16 chr3 122349385 122349713 -95687445 - L1MB3 LINE L1 -5569 815 499 1524 99 5 10 chr3 122349713 122349915 -95687243 - AluSp SINE Alu -112 201 1 4181 174 46 16 chr3 122349915 122350362 -95686796 - L1MB3 LINE L1 -5885 499 16 560 278 159 54 chr3 122351575 122351690 -95685468 - MLT1L LTR MaLR -25 563 462 2205 129 7 0 chr3 122351690 122352000 -95685158 - AluSx SINE Alu 0 312 1 560 278 159 54 chr3 122352000 122352367 -95684791 - MLT1L LTR MaLR -126 462 31 504 316 51 10 chr3 122352798 122352994 -95684164 + MIR3 SINE MIR 2 205 -3 285 208 8 154 chr3 122353146 122353276 -95683882 + MER102a DNA MER1_type 220 330 0 450 0 0 0 chr3 122353900 122353950 -95683208 + (TA)n Simple_repeat Simple_repeat 2 51 0 405 0 0 0 chr3 122354422 122354467 -95682691 + (TA)n Simple_repeat Simple_repeat 2 46 0 333 0 0 0 chr3 122354473 122354510 -95682648 + (T)n Simple_repeat Simple_repeat 1 37 0 184 192 96 82 chr3 122354683 122354756 -95682402 - L2 LINE L2 -4 3309 3236 761 308 190 6 chr3 122355080 122355803 -95681355 - L2 LINE L2 -1 3312 2464 3238 159 27 14 chr3 122355910 122356462 -95680696 - MER89 LTR ERV1 0 559 1 565 263 142 21 chr3 122356762 122357008 -95680150 + MER5C DNA MER1_type 10 296 -28 2423 50 0 0 chr3 122357008 122357328 -95679830 + AluY SINE Alu 1 320 0 565 263 142 21 chr3 122357328 122357361 -95679797 + MER5C DNA MER1_type 296 324 0 24 53 0 0 chr3 122357795 122357833 -95679325 + AT_rich Low_complexity Low_complexity 1 38 0 2088 135 3 0 chr3 122358288 122358584 -95678574 - AluSx SINE Alu -7 305 9 22 0 0 0 chr3 122359751 122359773 -95677385 + AT_rich Low_complexity Low_complexity 1 22 0 387 304 50 80 chr3 122359784 122360083 -95677075 + L3 LINE CR1 819 1108 -469 333 185 111 0 chr3 122360136 122360217 -95676941 - L1ME1 LINE L1 -289 5946 5857 435 169 0 45 chr3 122360224 122360313 -95676845 - L1ME1 LINE L1 -428 5805 5721 1045 163 0 0 chr3 122360322 122360488 -95676670 - FRAM SINE Alu -9 167 2 1577 225 36 13 chr3 122360500 122360971 -95676187 - L1ME1 LINE L1 -506 5729 5241 983 27 0 0 chr3 122360994 122361104 -95676054 - L1PA2 LINE L1 0 6155 6046 1473 188 35 60 chr3 122361112 122361431 -95675727 - AluJo SINE Alu -1 311 1 380 265 41 7 chr3 122361535 122361682 -95675476 - L1M4 LINE L1 -843 5303 5152 753 85 0 9 chr3 122361694 122361800 -95675358 - L1PA2 LINE L1 -4 6151 6047 1466 184 36 62 chr3 122361819 122362128 -95675030 - AluJo SINE Alu -11 301 1 2681 232 38 11 chr3 122362129 122362922 -95674236 - L1ME1 LINE L1 -960 5255 4442 812 160 8 0 chr3 122362927 122363058 -95674100 - AluJo/FRAM SINE Alu -2 310 179 600 161 0 0 chr3 122363056 122363143 -95674015 - AluJ/FLAM SINE Alu -224 88 2 * 670 180 68 44 chr3 122363151 122363357 -95673801 - L1ME1 LINE L1 -1777 4438 4228 1547 205 3 26 chr3 122363449 122363751 -95673407 - AluJo SINE Alu -16 296 2 571 281 97 21 chr3 122363791 122363899 -95673259 - L1ME1 LINE L1 -5236 1160 1062 2502 160 21 0 chr3 122363899 122364287 -95672871 - MSTD LTR MaLR 0 396 1 571 281 97 21 chr3 122364287 122364466 -95672692 - L1ME1 LINE L1 -5334 1062 851 2438 96 0 3 chr3 122365046 122365360 -95671798 - AluSp SINE Alu 0 313 1 299 291 12 12 chr3 122365361 122365533 -95671625 + HAL1b LINE L1 949 1120 -228 572 295 50 28 chr3 122366188 122366585 -95670573 - L1ME LINE L1 -4238 2023 1618 3322 134 12 2 chr3 122366585 122367396 -95669762 + L1PA15 LINE L1 5283 6165 0 2952 251 69 40 chr3 122367432 122368852 -95668306 - L1ME LINE L1 -4648 1613 5 246 254 57 57 chr3 122369291 122369413 -95667745 + L3 LINE CR1 1358 1479 -98 503 313 54 13 chr3 122370498 122370722 -95666436 - MIR SINE MIR -1 261 29 1551 171 24 3 chr3 122371177 122371475 -95665683 - L1MB4 LINE L1 -6 6174 5871 1042 157 61 0 chr3 122371475 122371672 -95665486 - MSTD LTR MaLR -187 209 1 2413 163 13 20 chr3 122371674 122372153 -95665005 - L1MB4 LINE L1 -438 5727 5255 314 278 82 0 chr3 122372156 122372253 -95664905 - MIR SINE MIR -109 153 49 1955 265 35 38 chr3 122372268 122372846 -95664312 + MLT1E LTR MaLR 14 589 -4 204 218 77 51 chr3 122373973 122374051 -95663107 - L3 LINE CR1 -126 1451 1372 2042 149 0 0 chr3 122374147 122374443 -95662715 + AluSq SINE Alu 1 296 -17 422 73 0 0 chr3 122374930 122374985 -95662173 - L1P LINE L1 -1511 4635 4581 4691 66 2 3 chr3 122374985 122375569 -95661589 + L1PA7 LINE L1 5564 6154 0 212 303 99 35 chr3 122375867 122376009 -95661149 - MIR SINE MIR -99 163 13 752 219 24 77 chr3 122376125 122376386 -95660772 - L1ME2 LINE L1 0 6164 5927 262 291 97 61 chr3 122379987 122380183 -95656975 - L2 LINE L2 0 3313 3111 * 2910 261 70 27 chr3 122380166 122381286 -95655872 - L2 LINE L2 -1446 1868 701 372 297 81 2 chr3 122381372 122381611 -95655547 - L2 LINE L2 -2611 703 389 686 253 12 0 chr3 122381614 122381780 -95655378 + MIR SINE MIR 70 237 -25 237 261 58 0 chr3 122382568 122382637 -95654521 + MIR SINE MIR 181 253 -9 437 276 33 26 chr3 122383154 122383306 -95653852 - MER20 DNA MER1_type -18 201 49 231 192 0 39 chr3 122383623 122383675 -95653483 + MER69 DNA AcHobo 1 50 -127 * 537 69 46 23 chr3 122383672 122383759 -95653399 + MER69 DNA AcHobo 2013 2101 -425 420 289 33 40 chr3 122383876 122384028 -95653130 - MIR SINE MIR -110 152 2 312 188 12 35 chr3 122385296 122385381 -95651777 + L1ME4a LINE L1 6017 6099 -22 501 335 0 16 chr3 122385427 122385621 -95651537 + MIR SINE MIR 2 192 -70 23 33 0 0 chr3 122387474 122387504 -95649654 + AT_rich Low_complexity Low_complexity 1 30 0 280 220 10 80 chr3 122387711 122387811 -95649347 + MER103 DNA DNA 38 130 -36 287 284 74 58 chr3 122387838 122388028 -95649130 + MIR SINE MIR 20 212 -50 301 319 26 18 chr3 122388714 122388827 -95648331 - L2 LINE L2 -15 3298 3185 487 237 46 0 chr3 122389318 122389449 -95647709 - LTR67 LTR ERVL -11 546 410 263 88 0 0 chr3 122389654 122389688 -95647470 - MLT1J LTR MaLR -377 134 101 217 204 20 0 chr3 122390496 122390545 -95646613 - L2 LINE L2 0 3272 3223 184 273 18 158 chr3 122390644 122391036 -95646122 - L2 LINE L2 -414 2900 2564 191 292 42 0 chr3 122391313 122391385 -95645773 + MIR SINE MIR 183 257 -5 356 273 101 0 chr3 122391778 122391877 -95645281 - L2 LINE L2 -19 3294 3186 247 202 155 0 chr3 122392112 122392196 -95644962 - MIR SINE MIR -75 187 91 341 278 52 52 chr3 122392731 122392904 -95644254 + L1MEd LINE L1 6 178 -5941 740 359 67 22 chr3 122392917 122393454 -95643704 + L1MEd LINE L1 268 828 -5291 680 276 53 5 chr3 122393552 122393952 -95643206 + L1MEd LINE L1 981 1441 -4862 190 67 44 44 chr3 122394611 122394656 -95642502 + T-rich Low_complexity Low_complexity 2 46 0 21 36 0 0 chr3 122394685 122394713 -95642445 + AT_rich Low_complexity Low_complexity 1 28 0 31 0 0 0 chr3 122395394 122395425 -95641733 + AT_rich Low_complexity Low_complexity 1 31 0 2140 98 22 0 chr3 122398529 122398837 -95638321 + AluY SINE Alu 1 314 0 479 315 101 7 chr3 122399174 122399460 -95637698 - L1MC4a LINE L1 -1911 5897 5585 7752 108 106 115 chr3 122401487 122403198 -95633960 - pTR5 LTR ERV1 0 2438 743 228 280 56 19 chr3 122403890 122403997 -95633161 + L1ME LINE L1 5488 5598 -564 350 278 22 0 chr3 122404479 122404569 -95632589 + HAL1 LINE L1 648 739 -1768 233 161 143 18 chr3 122404607 122404663 -95632495 - L1P LINE L1 -1984 4162 4100 2187 123 0 0 chr3 122405136 122405429 -95631729 + AluSg SINE Alu 1 293 -17 647 171 73 0 chr3 122406339 122406462 -95630696 + MLT1B LTR MaLR 6 137 -253 1117 249 3 26 chr3 122406504 122406837 -95630321 - AluSx SINE Alu 0 326 1 183 80 0 0 chr3 122407600 122407625 -95629533 + (TA)n Simple_repeat Simple_repeat 2 26 0 276 224 129 0 chr3 122407809 122407894 -95629264 + MIR3 SINE MIR 73 168 -40 2468 153 34 7 chr3 122408769 122409186 -95627972 + MSTA LTR MaLR 1 428 0 9420 162 30 14 chr3 122409186 122410812 -95626346 + MSTA-int LTR MaLR 1 1651 0 2150 144 60 14 chr3 122410812 122411179 -95625979 + MSTA LTR MaLR 1 384 -44 1742 167 14 11 chr3 122411180 122411455 -95625703 + AluSx SINE Alu 1 276 -36 405 0 0 0 chr3 122411460 122411505 -95625653 + (GAAA)n Simple_repeat Simple_repeat 1 45 0 2004 231 76 38 chr3 122412339 122412740 -95624418 + MLT1H1 LTR MaLR 12 439 -116 2276 132 34 23 chr3 122412740 122413126 -95624032 + MLT1B LTR MaLR 1 390 0 2004 231 76 38 chr3 122413126 122413248 -95623910 + MLT1H1 LTR MaLR 439 555 0 640 290 12 6 chr3 122413891 122414060 -95623098 + MIR SINE MIR 2 171 -91 713 280 70 0 chr3 122414649 122414835 -95622323 - MER63A DNA MER1_type -7 203 5 2153 108 11 0 chr3 122414913 122415215 -95621943 - AluSq SINE Alu 0 305 1 315 258 33 20 chr3 122415345 122415496 -95621662 + Charlie7 DNA MER1_type 2460 2612 0 216 0 0 0 chr3 122415569 122415593 -95621565 + (GA)n Simple_repeat Simple_repeat 1 24 0 24 0 0 0 chr3 122415665 122415689 -95621469 + AT_rich Low_complexity Low_complexity 1 24 0 501 207 0 52 chr3 122415815 122415931 -95621227 - MER5A DNA MER1_type -29 160 51 573 231 34 0 chr3 122415939 122416086 -95621072 - MER5C DNA MER1_type -167 157 6 316 183 33 0 chr3 122416239 122416299 -95620859 - MER5A DNA MER1_type -127 62 1 461 310 89 46 chr3 122416300 122416581 -95620577 - L2 LINE L2 -2985 329 37 3870 83 13 19 chr3 122417944 122418484 -95618674 - L1MA3 LINE L1 0 6305 5769 1357 192 8 8 chr3 122418486 122418741 -95618417 - AluJo SINE Alu -13 299 45 1370 136 13 38 chr3 122418741 122418977 -95618181 - L1M1 LINE L1 -524 5781 5552 6915 110 9 46 chr3 122418983 122420279 -95616879 - L1MA3 LINE L1 0 7724 6460 4077 139 26 28 chr3 122420351 122420564 -95616594 - L1MA3 LINE L1 -1089 6476 6264 5284 65 2 6 chr3 122420564 122421195 -95615963 + L1PA5 LINE L1 5527 6154 0 4077 139 26 28 chr3 122421195 122421720 -95615438 - L1MA3 LINE L1 -1301 6264 5740 834 130 16 0 chr3 122421720 122421843 -95615315 - AluSg/x SINE Alu -6 304 180 276 86 0 0 chr3 122421844 122421879 -95615279 - MER41B LTR ERV1 -600 35 1 12063 97 36 48 chr3 122421879 122424175 -95612983 - MER41B-int LTR ERV1 -2 5944 2864 2025 124 48 44 chr3 122424172 122424749 -95612409 - MER41B-int LTR ERV1 -4058 3758 3185 * 189 107 0 0 chr3 122424749 122424777 -95612381 + (CA)n Simple_repeat Simple_repeat 1 28 0 2025 124 48 44 chr3 122424777 122424789 -95612369 - MER41B-int LTR ERV1 -4631 3185 1080 3954 142 55 0 chr3 122424789 122425388 -95611770 - MER41B-int LTR ERV1 -5314 632 1 957 103 62 0 chr3 122425388 122425508 -95611650 - MER41B LTR ERV1 0 635 503 1972 150 3 3 chr3 122425508 122425808 -95611350 + AluSx SINE Alu 1 300 -12 957 103 62 0 chr3 122425808 122425833 -95611325 - MER41B LTR ERV1 -132 503 481 3860 156 45 81 chr3 122425833 122426398 -95610760 - L1MA3 LINE L1 -3007 4558 3974 2071 102 0 84 chr3 122426398 122426731 -95610427 - AluSq SINE Alu -8 305 1 3860 156 45 81 chr3 122426731 122427095 -95610063 - L1MA3 LINE L1 -3591 3974 3641 2297 102 0 3 chr3 122427095 122427398 -95609760 - AluY SINE Alu -9 302 1 3860 156 45 81 chr3 122427398 122427698 -95609460 - L1MA3 LINE L1 -3924 3641 3332 * 18420 151 30 19 chr3 122427694 122430478 -95606680 - L1PB1 LINE L1 0 6867 4117 2323 90 3 16 chr3 122430478 122430789 -95606369 - AluY SINE Alu -4 307 1 18420 151 30 19 chr3 122430789 122432684 -95604474 - L1PB1 LINE L1 -2750 4117 2245 207 100 0 0 chr3 122432684 122432714 -95604444 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 18420 151 30 19 chr3 122432714 122433494 -95603664 - L1PB1 LINE L1 -4622 2245 1475 2835 16 0 0 chr3 122433494 122433804 -95603354 + AluYa5 SINE Alu 1 310 -1 18420 151 30 19 chr3 122433804 122434367 -95602791 - L1PB1 LINE L1 -5392 1475 920 2397 129 8 14 chr3 122434367 122434724 -95602434 + THE1A LTR MaLR 1 355 0 18420 151 30 19 chr3 122434724 122435482 -95601676 - L1PB1 LINE L1 -5947 920 3 17818 121 111 53 chr3 122435511 122435930 -95601228 - L1M1 LINE L1 -4220 3345 2952 1799 93 4 4 chr3 122435930 122436203 -95600955 + AluY SINE Alu 54 326 0 991 110 110 0 chr3 122436203 122436349 -95600809 - THE1B LTR MaLR -202 162 1 17818 121 111 53 chr3 122436349 122438931 -95598227 - L1M1 LINE L1 -4612 2953 13 288 256 121 77 chr3 122439078 122439186 -95597972 - L1MC5 LINE L1 -145 7897 7795 2221 182 5 18 chr3 122439186 122439581 -95597577 - MLT1B LTR MaLR 0 390 1 288 256 121 77 chr3 122439581 122439754 -95597404 - L1MC5 LINE L1 -247 7795 7501 43749 32 24 1 chr3 122439757 122445772 -95591386 + L1PA3 LINE L1 1 6155 0 25 0 0 0 chr3 122445814 122445839 -95591319 + AT_rich Low_complexity Low_complexity 1 25 0 548 254 83 59 chr3 122445930 122446839 -95590319 - L1MC5 LINE L1 -547 7495 6637 15252 114 16 69 chr3 122446855 122449409 -95587749 - Tigger1 DNA MER2_type 0 2418 1 243 0 0 0 chr3 122449780 122449807 -95587351 + (CA)n Simple_repeat Simple_repeat 2 28 0 1879 221 25 3 chr3 122449807 122450164 -95586994 - MLT1A1 LTR MaLR 0 365 1 2260 268 86 17 chr3 122450169 122451146 -95586012 - L1MC4a LINE L1 -743 5403 5133 534 326 53 38 chr3 122451304 122451721 -95585437 - L1MC4a LINE L1 -1701 4445 4023 1673 122 106 0 chr3 122451849 122452103 -95585055 + AluSp SINE Alu 1 281 -32 189 0 0 0 chr3 122452103 122452124 -95585034 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 252 345 58 20 chr3 122452211 122452504 -95584654 - L1MC4a LINE L1 -2294 3852 3549 2761 120 21 24 chr3 122452741 122453208 -95583950 + MER31A LTR ERV1 1 466 -19 523 264 44 6 chr3 122454977 122455136 -95582022 - MIR SINE MIR -13 249 85 248 365 84 0 chr3 122455969 122456076 -95581082 + L2 LINE L2 3156 3271 -1 702 230 17 17 chr3 122458816 122458994 -95578164 + MER5B DNA MER1_type 1 178 0 934 219 77 24 chr3 122459286 122459533 -95577625 + MIR SINE MIR 1 260 -2 2161 80 4 7 chr3 122459753 122460029 -95577129 - AluSp SINE Alu -6 307 33 297 312 224 19 chr3 122460065 122460270 -95576888 + MIR SINE MIR 15 261 -1 265 276 130 81 chr3 122461870 122461993 -95575165 - L2 LINE L2 -1 3271 3143 624 196 38 85 chr3 122462025 122462260 -95574898 + MER97c DNA MER1_type? 867 1090 0 838 138 62 0 chr3 122463123 122463253 -95573905 + FRAM SINE Alu 25 162 -14 343 294 62 71 chr3 122463312 122463446 -95573712 + MIR3 SINE MIR 8 141 -121 1943 174 57 31 chr3 122463446 122463831 -95573327 - MSTD LTR MaLR 0 396 2 343 294 62 71 chr3 122463831 122463907 -95573251 + MIR3 SINE MIR 141 216 -46 312 268 62 9 chr3 122464738 122464850 -95572308 - LTR33 LTR ERVL 0 521 404 684 323 43 11 chr3 122464930 122465209 -95571949 - LTR33 LTR ERVL -228 293 6 601 306 46 1 chr3 122465331 122465612 -95571546 - HERV16 LTR ERVL -3420 1576 1265 1097 205 4 4 chr3 122465750 122465979 -95571179 - MER58B DNA MER1_type 0 341 113 24 32 0 0 chr3 122465980 122466011 -95571147 + AT_rich Low_complexity Low_complexity 1 31 0 5455 78 78 13 chr3 122466011 122466360 -95570798 - L1PB1 LINE L1 -1 6150 5825 969 94 0 0 chr3 122466360 122466498 -95570660 + (TA)n Simple_repeat Simple_repeat 1 138 0 264 30 0 0 chr3 122466497 122466530 -95570628 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 5455 78 78 13 chr3 122466498 122467119 -95570039 - L1PB1 LINE L1 -326 5825 5155 381 223 29 19 chr3 122467124 122467227 -95569931 - MER58B DNA MER1_type -229 112 9 408 297 87 27 chr3 122467312 122467497 -95569661 - HERV16 LTR ERVL -3942 1054 859 418 362 9 18 chr3 122467631 122467855 -95569303 - HERV16 LTR ERVL -4344 652 431 761 212 201 50 chr3 122468228 122468603 -95568555 - LTR16A1 LTR ERVL 0 457 17 2598 192 22 24 chr3 122468603 122468644 -95568514 - MLT2B3 LTR ERVL -3 551 511 909 104 0 0 chr3 122468644 122468779 -95568379 + (TGGA)n Simple_repeat Simple_repeat 4 138 0 2598 192 22 24 chr3 122468779 122469289 -95567869 - MLT2B3 LTR ERVL -43 511 1 761 212 201 50 chr3 122469289 122469310 -95567848 - LTR16A1 LTR ERVL -440 17 1 604 258 96 38 chr3 122469338 122469547 -95567611 + MIR SINE MIR 18 238 -24 693 314 110 58 chr3 122469742 122470699 -95566459 - L2 LINE L2 -560 2754 1748 273 57 0 0 chr3 122471086 122471121 -95566037 + (TG)n Simple_repeat Simple_repeat 2 36 0 189 195 49 0 chr3 122471501 122471542 -95565616 - L2 LINE L2 -93 3220 3178 22 0 0 0 chr3 122472431 122472453 -95564705 + AT_rich Low_complexity Low_complexity 1 22 0 1142 175 70 44 chr3 122472933 122473248 -95563910 + MER33 DNA MER1_type 2 324 0 1124 160 5 19 chr3 122474084 122474290 -95562868 + MER3 DNA MER1_type 1 203 -6 371 274 67 47 chr3 122474713 122474881 -95562277 + MIR3 SINE MIR 14 184 -65 31 82 0 0 chr3 122475636 122475709 -95561449 + AT_rich Low_complexity Low_complexity 1 73 0 21 0 0 0 chr3 122477653 122477674 -95559484 + AT_rich Low_complexity Low_complexity 1 21 0 214 163 0 41 chr3 122478329 122478378 -95558780 + (TATG)n Simple_repeat Simple_repeat 4 50 0 342 0 0 0 chr3 122478439 122478477 -95558681 + (TG)n Simple_repeat Simple_repeat 2 39 0 187 212 15 15 chr3 122479335 122479401 -95557757 + (TA)n Simple_repeat Simple_repeat 1 66 0 21 36 0 0 chr3 122482019 122482047 -95555111 + AT_rich Low_complexity Low_complexity 1 28 0 302 121 0 35 chr3 122482675 122482733 -95554425 + (CATATA)n Simple_repeat Simple_repeat 1 56 0 21 0 0 0 chr3 122483570 122483591 -95553567 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr3 122486030 122486059 -95551099 + AT_rich Low_complexity Low_complexity 1 29 0 234 0 0 0 chr3 122492583 122492609 -95544549 + (A)n Simple_repeat Simple_repeat 1 26 0 25 51 0 0 chr3 122493160 122493199 -95543959 + AT_rich Low_complexity Low_complexity 1 39 0 243 0 0 0 chr3 122493432 122493459 -95543699 + (A)n Simple_repeat Simple_repeat 1 27 0 288 0 0 0 chr3 122494828 122494860 -95542298 + (TG)n Simple_repeat Simple_repeat 1 32 0 225 0 0 0 chr3 122495781 122495806 -95541352 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr3 122498794 122498815 -95538343 + AT_rich Low_complexity Low_complexity 1 21 0 31 26 0 0 chr3 122501392 122501430 -95535728 + AT_rich Low_complexity Low_complexity 1 38 0 180 77 0 0 chr3 122502374 122502400 -95534758 + (T)n Simple_repeat Simple_repeat 1 26 0 185 128 0 26 chr3 122502597 122502636 -95534522 + (CAAAAA)n Simple_repeat Simple_repeat 4 41 0 22 35 0 0 chr3 122503241 122503270 -95533888 + AT_rich Low_complexity Low_complexity 1 29 0 201 296 0 0 chr3 122504664 122504718 -95532440 - MIR SINE MIR -3 259 206 283 309 32 49 chr3 122505412 122505535 -95531623 + MIR3 SINE MIR 57 177 -31 530 228 134 17 chr3 122506220 122506395 -95530763 + MIR SINE MIR 28 225 -37 2173 102 0 3 chr3 122507488 122507781 -95529377 + AluSx SINE Alu 1 292 -20 299 282 137 23 chr3 122508250 122508381 -95528777 - MIR SINE MIR -49 213 68 232 75 25 0 chr3 122508884 122508924 -95528234 - L1PB2 LINE L1 -3 6148 6108 423 218 225 7 chr3 122509341 122509483 -95527675 - MER5A DNA MER1_type -3 186 14 1833 182 0 0 chr3 122510406 122510708 -95526450 - AluJb SINE Alu -10 302 1 21 0 0 0 chr3 122510775 122510796 -95526362 + AT_rich Low_complexity Low_complexity 1 21 0 706 151 95 8 chr3 122510808 122510934 -95526224 - FLAM_A SINE Alu 0 142 6 2118 148 0 0 chr3 122512640 122512945 -95524213 + AluJb SINE Alu 1 305 -7 723 300 88 7 chr3 122513139 122513422 -95523736 - L3 LINE CR1 -2 1575 1270 936 274 23 30 chr3 122513428 122513691 -95523467 - MIR SINE MIR 0 262 2 249 171 53 92 chr3 122513702 122513778 -95523380 - L3 LINE CR1 -315 1262 1190 410 211 42 0 chr3 122516471 122516566 -95520592 + MER94 DNA DNA 4 102 -32 997 230 28 0 chr3 122517479 122517692 -95519466 - MIR SINE MIR -42 220 2 450 220 11 126 chr3 122518230 122518286 -95518872 - MIR SINE MIR -56 206 145 221 75 25 0 chr3 122518286 122518326 -95518832 + (TTTTG)n Simple_repeat Simple_repeat 1 41 0 2182 101 7 0 chr3 122518326 122518603 -95518555 - AluSx SINE Alu -33 279 1 450 220 11 126 chr3 122518603 122518727 -95518431 - MIR SINE MIR -115 147 46 265 242 15 0 chr3 122521083 122521149 -95516009 + Tigger8 DNA MER2_type 600 666 0 21 36 0 0 chr3 122521921 122521949 -95515209 + AT_rich Low_complexity Low_complexity 1 28 0 2179 87 10 39 chr3 122524132 122524443 -95512715 - AluSg SINE Alu -8 302 1 23 0 0 0 chr3 122524845 122524868 -95512290 + AT_rich Low_complexity Low_complexity 1 23 0 2115 138 3 0 chr3 122527962 122528258 -95508900 + AluSx SINE Alu 1 297 -15 518 219 9 44 chr3 122529826 122529940 -95507218 - L2 LINE L2 0 3313 3204 1784 175 28 0 chr3 122531059 122531350 -95505808 - AluJb SINE Alu -12 300 2 218 154 26 0 chr3 122531488 122531527 -95505631 + MIR SINE MIR 106 145 -117 556 259 0 51 chr3 122531866 122532024 -95505134 - MIR SINE MIR -13 249 100 227 348 45 18 chr3 122535109 122535221 -95501937 + L2 LINE L2 3199 3313 0 403 341 40 23 chr3 122535468 122535644 -95501514 + MIR3 SINE MIR 11 189 -19 1694 164 6 53 chr3 122536339 122536662 -95500496 + AluJb SINE Alu 1 308 -4 2088 94 4 0 chr3 122536826 122537093 -95500065 - AluSc SINE Alu -41 268 1 247 370 116 23 chr3 122537319 122537665 -95499493 + L2 LINE L2 2881 3258 -14 195 114 0 0 chr3 122537668 122537703 -95499455 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 208 239 14 127 chr3 122541634 122541705 -95495453 + MIR SINE MIR 87 149 -59 208 203 203 0 chr3 122541675 122541734 -95495424 + MIR SINE MIR 119 189 -73 26 0 0 0 chr3 122543489 122543515 -95493643 + AT_rich Low_complexity Low_complexity 1 26 0 994 171 6 6 chr3 122544706 122544881 -95492277 + MIR3 SINE MIR 20 194 -14 22 35 0 0 chr3 122544920 122544949 -95492209 + AT_rich Low_complexity Low_complexity 1 29 0 198 294 217 0 chr3 122546734 122546826 -95490332 - L2 LINE L2 -4 3309 3198 456 77 0 0 chr3 122547980 122548045 -95489113 + (TC)n Simple_repeat Simple_repeat 2 66 0 905 193 32 0 chr3 122549088 122549275 -95487883 + MIR SINE MIR 64 256 -6 1988 102 53 3 chr3 122549337 122549622 -95487536 + AluSc SINE Alu 1 299 -10 350 308 55 0 chr3 122550087 122550233 -95486925 - LTR33 LTR ERVL 0 521 368 530 295 17 17 chr3 122550330 122550503 -95486655 - LTR33 LTR ERVL -308 213 41 487 260 0 10 chr3 122550695 122550799 -95486359 + L2 LINE L2 3211 3313 0 2413 134 44 64 chr3 122553245 122553357 -95483801 - L1MA8 LINE L1 -1 6290 6177 2335 86 3 3 chr3 122553357 122553661 -95483497 + AluSc SINE Alu 1 304 -5 2413 134 44 64 chr3 122553661 122554076 -95483082 - L1MA8 LINE L1 -114 6177 5774 495 363 76 26 chr3 122554568 122555106 -95482052 + L2 LINE L2 2302 2866 -448 424 265 129 0 chr3 122555459 122555591 -95481567 - MIR3 SINE MIR 0 208 60 2052 73 11 0 chr3 122555893 122556179 -95480979 + L1MA1 LINE L1 6014 6302 0 641 318 19 28 chr3 122557843 122558112 -95479046 - MIR SINE MIR 0 262 2 577 153 10 0 chr3 122558344 122558442 -95478716 - MER5A DNA MER1_type -75 114 16 437 289 18 0 chr3 122559084 122559198 -95477960 + MIR3 SINE MIR 77 192 -16 195 69 0 0 chr3 122559750 122559779 -95477379 + (CA)n Simple_repeat Simple_repeat 2 30 0 399 320 79 31 chr3 122560166 122560394 -95476764 - MIR SINE MIR -17 245 7 187 314 0 0 chr3 122561046 122561097 -95476061 + L2 LINE L2 1361 1411 -1903 244 242 42 11 chr3 122561429 122561524 -95475634 - MER103 DNA DNA 0 166 69 182 401 33 40 chr3 122561753 122561905 -95475253 + L2 LINE L2 2901 3051 -221 405 294 8 32 chr3 122563871 122563997 -95473161 + MIR SINE MIR 23 145 -63 275 197 123 90 chr3 122564041 122564163 -95472995 + MIR SINE MIR 128 253 -9 504 0 0 0 chr3 122564833 122564889 -95472269 + (CA)n Simple_repeat Simple_repeat 2 57 0 586 287 0 7 chr3 122567620 122567763 -95469395 + MIR3 SINE MIR 61 202 -6 284 232 0 0 chr3 122569315 122569384 -95467774 + (TA)n Simple_repeat Simple_repeat 1 69 0 234 0 0 0 chr3 122572894 122572920 -95464238 + (T)n Simple_repeat Simple_repeat 1 26 0 244 296 139 0 chr3 122673444 122673552 -95363606 - MIR SINE MIR -136 126 4 374 287 147 41 chr3 122673630 122673944 -95363214 - L1ME4a LINE L1 -65 6056 5710 1407 220 37 45 chr3 122674141 122674518 -95362640 - MLT1A2 LTR MaLR 0 374 1 21 0 0 0 chr3 122674703 122674724 -95362434 + AT_rich Low_complexity Low_complexity 1 21 0 257 279 139 51 chr3 122675072 122675148 -95362010 + MIR SINE MIR 77 145 -117 2073 104 20 24 chr3 122675148 122675446 -95361712 + AluSx SINE Alu 1 297 -15 257 279 139 51 chr3 122675446 122675527 -95361631 + MIR SINE MIR 145 248 -14 1567 208 62 3 chr3 122676035 122676405 -95360753 - L1P LINE L1 -921 5225 4834 1113 181 45 21 chr3 122676393 122676636 -95360522 + L1P LINE L1 4570 4818 -1328 * 1999 162 35 0 chr3 122676654 122676994 -95360164 - L1MC1 LINE L1 -2 6331 5980 346 288 75 14 chr3 122678310 122678456 -95358702 - MIR SINE MIR -33 229 75 280 256 51 68 chr3 122678577 122678694 -95358464 + MIR SINE MIR 98 212 -50 1939 109 26 7 chr3 122679342 122679644 -95357514 + L1PA11 LINE L1 5867 6174 0 23 33 0 0 chr3 122679872 122679902 -95357256 + AT_rich Low_complexity Low_complexity 1 30 0 276 95 0 0 chr3 122679906 122679948 -95357210 - L1MA3 LINE L1 -8 6297 6256 712 263 23 5 chr3 122680087 122680304 -95356854 + L1MC4 LINE L1 7684 7904 -138 21 0 0 0 chr3 122680391 122680412 -95356746 + AT_rich Low_complexity Low_complexity 1 21 0 1510 87 0 0 chr3 122680455 122680650 -95356508 + HERV17 LTR ERV1 8432 8626 0 2659 58 0 0 chr3 122680651 122680976 -95356182 + LTR17 LTR ERV1 2 326 -454 564 198 27 64 chr3 122681359 122681546 -95355612 + MER46C DNA MER2_type 19 198 -140 2500 50 0 0 chr3 122681594 122681895 -95355263 + AluY SINE Alu 1 301 -10 26 74 0 0 chr3 122681930 122681984 -95355174 + AT_rich Low_complexity Low_complexity 1 54 0 897 283 17 0 chr3 122682031 122682264 -95354894 + MIR SINE MIR 1 237 -25 2062 117 4 0 chr3 122682481 122682809 -95354349 - AluY SINE Alu 0 329 1 2146 123 7 0 chr3 122683130 122683440 -95353718 - AluSp SINE Alu -1 312 1 601 296 85 0 chr3 122683642 122683841 -95353317 - MIR SINE MIR -16 246 31 23 0 0 0 chr3 122683885 122683908 -95353250 + AT_rich Low_complexity Low_complexity 1 23 0 204 327 49 37 chr3 122684784 122684946 -95352212 - L2 LINE L2 -219 3053 2890 217 336 71 14 chr3 122684960 122685100 -95352058 - MIR SINE MIR -6 256 109 1724 263 53 44 chr3 122685236 122685822 -95351336 - MLT1E LTR MaLR 0 593 3 339 393 36 36 chr3 122687065 122687345 -95349813 - L2 LINE L2 -1 3271 2992 2218 247 78 41 chr3 122687481 122688177 -95348981 - L1M4 LINE L1 -2576 3570 2815 1773 101 75 15 chr3 122688177 122688510 -95348648 + AluSx SINE Alu 1 349 0 2218 247 78 41 chr3 122688510 122688918 -95348240 - L1M4 LINE L1 -3331 2815 2424 2172 115 0 0 chr3 122688958 122689246 -95347912 - AluSg SINE Alu -22 288 1 2967 165 6 17 chr3 122689251 122689773 -95347385 + Tigger1 DNA MER2_type 11 526 -1892 3803 138 34 6 chr3 122689779 122690418 -95346740 + Tigger1 DNA MER2_type 634 1290 -1128 192 317 24 123 chr3 122691537 122691755 -95345403 - MIR SINE MIR -46 216 20 335 331 27 27 chr3 122692520 122692668 -95344490 + MIR3 SINE MIR 52 199 -9 322 295 161 27 chr3 122693515 122693664 -95343494 + MER5B DNA MER1_type 4 172 -6 672 286 124 0 chr3 122694168 122694385 -95342773 + MIR SINE MIR 12 255 -7 225 266 91 61 chr3 122695239 122695411 -95341747 + MIR SINE MIR 41 207 -51 278 256 47 23 chr3 122695573 122695659 -95341499 + L2 LINE L2 3182 3269 -3 323 287 14 63 chr3 122695953 122696096 -95341062 - L2 LINE L2 -22 3291 3156 1369 47 0 0 chr3 122696566 122696736 -95340422 - L1PA4 LINE L1 -3 6152 5983 2668 28 0 3 chr3 122696736 122697050 -95340108 + L1PA4 LINE L1 5662 5974 -181 2159 131 0 0 chr3 122697232 122697544 -95339614 - AluSx SINE Alu 0 312 1 2007 350 64 47 chr3 122697637 122699428 -95337730 - HERVL LTR ERVL -1041 4613 2793 1084 169 82 22 chr3 122699435 122699666 -95337492 + THE1C LTR MaLR 1 245 -130 217 250 83 0 chr3 122699771 122699843 -95337315 + MIR SINE MIR 56 133 -129 2389 105 31 6 chr3 122701256 122701609 -95335549 - THE1B LTR MaLR 0 364 3 23 97 0 0 chr3 122701995 122702067 -95335091 + AT_rich Low_complexity Low_complexity 1 72 0 235 277 108 12 chr3 122702218 122702301 -95334857 + L2 LINE L2 3223 3313 0 21 0 0 0 chr3 122702919 122702940 -95334218 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr3 122703832 122703860 -95333298 + AT_rich Low_complexity Low_complexity 1 28 0 253 248 158 20 chr3 122704488 122704589 -95332569 + L3 LINE CR1 1246 1360 -217 217 374 12 12 chr3 122704652 122704735 -95332423 + L3 LINE CR1 1484 1566 -11 1166 223 120 43 chr3 122705221 122705597 -95331561 - MLT2D LTR ERVL 0 414 10 446 204 0 73 chr3 122706089 122706226 -95330932 - L1MA4 LINE L1 0 6300 6174 940 86 0 0 chr3 122706227 122706355 -95330803 - AluY SINE Alu 0 311 184 1818 157 0 0 chr3 122706721 122707008 -95330150 + AluSx SINE Alu 1 287 -25 1074 176 5 3 chr3 122707046 122707272 -95329886 + AluJb SINE Alu 2 304 -8 201 233 0 0 chr3 122707644 122707687 -95329471 + GA-rich Low_complexity Low_complexity 2 44 0 247 336 62 18 chr3 122708119 122708232 -95328926 + MIR3 SINE MIR 15 132 -76 5877 120 11 2 chr3 122708244 122709130 -95328028 - L1PB1 LINE L1 0 6151 5258 633 13 0 13 chr3 122709321 122709398 -95327760 - L1PA2 LINE L1 -341 5814 5739 2650 23 0 0 chr3 122709398 122709701 -95327457 + L1PA2 LINE L1 5847 6155 0 749 305 92 23 chr3 122709823 122710256 -95326902 - L1ME3A LINE L1 -225 5945 5483 227 276 17 0 chr3 122710453 122710511 -95326647 + LTR16C LTR ERVL 211 269 -222 969 238 26 26 chr3 122710531 122710785 -95326373 - MLT1D LTR MaLR 0 505 223 212 59 29 0 chr3 122710789 122710823 -95326335 + (CA)n Simple_repeat Simple_repeat 2 36 0 261 197 0 0 chr3 122710823 122710889 -95326269 + (TA)n Simple_repeat Simple_repeat 1 66 0 419 256 67 0 chr3 122710912 122711002 -95326156 - FLAM_A SINE Alu -37 96 1 216 200 0 0 chr3 122711399 122711444 -95325714 + (TAA)n Simple_repeat Simple_repeat 2 46 0 1408 143 0 0 chr3 122711464 122711680 -95325478 - L1PB1 LINE L1 -152 5999 5784 306 66 0 49 chr3 122711681 122711742 -95325416 + (TA)n Simple_repeat Simple_repeat 2 59 0 279 0 0 0 chr3 122711741 122711772 -95325386 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 7152 184 19 0 chr3 122711772 122713127 -95324031 - L1PB1 LINE L1 -359 5792 4381 354 23 0 0 chr3 122713127 122713170 -95323988 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 7152 184 19 0 chr3 122713170 122713864 -95323294 - L1PB1 LINE L1 -1770 4381 3701 1573 76 44 9 chr3 122713864 122714089 -95323069 - MLT2A1 LTR ERVL -210 234 2 2228 92 0 0 chr3 122714403 122714696 -95322462 - AluSg1 SINE Alu -16 293 1 4030 147 39 1 chr3 122715200 122715868 -95321290 - Tigger2 DNA MER2_type -366 2352 1660 1072 243 129 73 chr3 122715868 122716401 -95320757 + LTR28 LTR ERV1 1 647 -282 535 153 10 10 chr3 122716406 122716504 -95320654 + MER4A LTR ERV1 1 98 -566 * 1706 138 3 76 chr3 122716499 122716875 -95320283 + MER4A LTR ERV1 256 662 -2 537 282 128 26 chr3 122716875 122717139 -95320019 + LTR28 LTR ERV1 693 983 -37 362 310 9 17 chr3 122717167 122717283 -95319875 + LTR28 LTR ERV1 900 1014 -6 7999 184 51 21 chr3 122717283 122718900 -95318258 - Tigger2 DNA MER2_type -1049 1669 4 1235 296 70 31 chr3 122719018 122719565 -95317593 - L1MCc LINE L1 -5831 592 25 455 239 197 42 chr3 122719613 122719922 -95317236 - L1PB1 LINE L1 -2846 3300 2944 246 313 12 25 chr3 122720876 122720956 -95316202 + MIR SINE MIR 5 83 -179 313 327 24 36 chr3 122721003 122721137 -95316021 + MIR SINE MIR 79 212 -50 2213 98 0 0 chr3 122721137 122721432 -95315726 - AluY SINE Alu -16 295 1 313 327 24 36 chr3 122721432 122721465 -95315693 + MIR SINE MIR 212 244 -18 2029 108 14 10 chr3 122721505 122721802 -95315356 - AluSx SINE Alu -14 298 1 2467 84 11 22 chr3 122722547 122722916 -95314242 - L1MA1 LINE L1 -4 6298 5934 31242 82 20 6 chr3 122723164 122728433 -95308725 - L1PA6 LINE L1 -1 7591 1440 750 184 147 6 chr3 122729005 122729168 -95307990 + MER5A DNA MER1_type 3 188 -1 2050 109 22 19 chr3 122729256 122729567 -95307591 - AluSx SINE Alu 0 312 1 486 331 70 8 chr3 122730790 122731032 -95306126 + L1MEc LINE L1 31 287 -6109 344 118 71 12 chr3 122731276 122731361 -95305797 + L1ME1 LINE L1 5106 5195 -951 353 164 67 24 chr3 122731421 122731539 -95305619 + (TATAA)n Simple_repeat Simple_repeat 1 113 -114 183 42 0 0 chr3 122731539 122731563 -95305595 + (TTATA)n Simple_repeat Simple_repeat 3 26 0 353 164 67 24 chr3 122731563 122731639 -95305519 + (TATAA)n Simple_repeat Simple_repeat 113 227 0 82 43 0 0 chr3 122731643 122731760 -95305398 + AT_rich Low_complexity Low_complexity 1 117 0 2351 263 59 14 chr3 122731786 122732714 -95304444 + L1ME1 LINE L1 5189 6162 -4 585 260 54 0 chr3 122732762 122732966 -95304192 + L1MC4 LINE L1 7026 7240 -802 3117 231 23 8 chr3 122732976 122733680 -95303478 + L1M1 LINE L1 22 735 -6830 622 256 0 0 chr3 122734101 122734238 -95302920 + L1M1 LINE L1 398 534 -7031 4672 175 29 48 chr3 122734243 122734970 -95302188 + L1M1 LINE L1 745 1453 -6112 2106 122 0 0 chr3 122734970 122735266 -95301892 - AluSc SINE Alu -13 296 1 4672 175 29 48 chr3 122735266 122735458 -95301700 + L1M1 LINE L1 1453 1647 -5918 803 58 0 0 chr3 122735459 122735563 -95301595 + L1MA1 LINE L1 6195 6298 -4 756 242 112 37 chr3 122735589 122735911 -95301247 + L1MC4 LINE L1 7225 7570 -472 258 237 41 41 chr3 122736014 122736111 -95301047 - L1MA4 LINE L1 -137 6163 6067 5942 208 60 15 chr3 122736119 122739280 -95297878 - L1 LINE L1 -3035 3293 4 29 70 0 0 chr3 122739358 122739415 -95297743 + AT_rich Low_complexity Low_complexity 1 57 0 23 68 0 0 chr3 122739515 122739559 -95297599 + AT_rich Low_complexity Low_complexity 1 44 0 2359 78 0 0 chr3 122739908 122740216 -95296942 - AluY SINE Alu 0 311 4 621 278 47 6 chr3 122740413 122740582 -95296576 - MER5B DNA MER1_type 0 178 3 2566 94 11 18 chr3 122741591 122741973 -95295185 - L1PB2 LINE L1 -2 6149 5771 224 298 111 29 chr3 122741989 122742160 -95294998 - MIR SINE MIR -6 256 72 252 280 61 30 chr3 122742163 122742295 -95294863 - L1ME4a LINE L1 -29 6092 5957 4717 111 24 7 chr3 122742403 122743116 -95294042 - L1PA11 LINE L1 -12 6162 5438 13337 154 5 23 chr3 122743219 122745654 -95291504 - L1PA11 LINE L1 -909 5237 2845 1624 133 14 14 chr3 122745637 122745915 -95291243 - L1P5 LINE L1 -352 5799 5522 * 26 50 0 0 chr3 122746210 122746250 -95290908 + AT_rich Low_complexity Low_complexity 1 40 0 442 111 0 0 chr3 122747835 122747898 -95289260 + MSTA LTR MaLR 364 426 -2 1308 176 14 95 chr3 122747948 122748067 -95289091 + L1MA8 LINE L1 5827 5954 -337 2089 107 7 3 chr3 122748067 122748356 -95288802 + AluSc SINE Alu 1 290 -19 1308 176 14 95 chr3 122748356 122748605 -95288553 + L1MA8 LINE L1 5954 6165 -126 346 323 39 59 chr3 122748611 122748948 -95288210 - L1MEd LINE L1 -5124 995 666 439 296 32 104 chr3 122748979 122749381 -95287777 - L1MEd LINE L1 -5662 457 85 440 251 55 27 chr3 122749539 122749758 -95287400 - L1MC5 LINE L1 -114 7847 7623 906 234 106 52 chr3 122749839 122750301 -95286857 - L1MC5 LINE L1 -570 7391 6905 1441 113 0 193 chr3 122750473 122750846 -95286312 + AluSx SINE Alu 1 301 -1 257 294 47 65 chr3 122751140 122751354 -95285804 - L1MC5 LINE L1 -1853 5955 5746 203 286 43 29 chr3 122751391 122751461 -95285697 - L3 LINE CR1 -528 1049 979 305 361 110 17 chr3 122751540 122751839 -95285319 - L3 LINE CR1 -727 850 524 27 49 0 0 chr3 122751918 122751959 -95285199 + AT_rich Low_complexity Low_complexity 1 41 0 401 147 2 0 chr3 122752444 122752514 -95284644 - AluJo SINE Alu -4 298 236 701 176 0 78 chr3 122752515 122752668 -95284490 - AluJo SINE Alu -171 141 1 180 229 108 36 chr3 122753843 122753926 -95283232 + MIR SINE MIR 92 180 -82 4202 176 19 43 chr3 122754513 122755767 -95281391 + L1MA9 LINE L1 4904 6245 -67 202 276 13 53 chr3 122756030 122756106 -95281052 + L2 LINE L2 3189 3261 -11 27 0 0 0 chr3 122756177 122756204 -95280954 + AT_rich Low_complexity Low_complexity 1 27 0 230 120 0 40 chr3 122756551 122756601 -95280557 + (TAAAAA)n Simple_repeat Simple_repeat 4 51 0 1443 210 77 39 chr3 122757864 122758282 -95278876 - MER31B LTR ERV1 -4 510 1 233 284 71 98 chr3 122758678 122758834 -95278324 + MER5A DNA MER1_type 1 165 -24 2230 102 0 3 chr3 122759149 122759444 -95277714 - AluSx SINE Alu -18 294 1 456 253 146 6 chr3 122759544 122759702 -95277456 - MIR SINE MIR -11 251 72 202 366 12 12 chr3 122760805 122760887 -95276271 - L2 LINE L2 -8 3305 3224 380 172 0 21 chr3 122761600 122761693 -95275465 + L1PA15 LINE L1 6075 6165 0 369 269 31 25 chr3 122762505 122762665 -95274493 + L1MC4a LINE L1 5719 5879 -1929 24 0 0 0 chr3 122763740 122763764 -95273394 + AT_rich Low_complexity Low_complexity 1 24 0 242 228 0 0 chr3 122764600 122764657 -95272501 + (TA)n Simple_repeat Simple_repeat 2 58 0 414 258 125 88 chr3 122764719 122764959 -95272199 - L2 LINE L2 -1699 1615 1367 22 70 0 0 chr3 122766124 122766167 -95270991 + AT_rich Low_complexity Low_complexity 1 43 0 181 372 51 39 chr3 122767259 122767415 -95269743 - MIR SINE MIR -34 228 71 19260 80 3 2 chr3 122767972 122772483 -95264675 - L1PA7 LINE L1 -1 6153 1632 33 43 0 0 chr3 122773864 122773911 -95263247 + AT_rich Low_complexity Low_complexity 1 47 0 379 383 88 13 chr3 122773961 122774345 -95262813 + L2 LINE L2 2432 2844 -470 26 0 0 0 chr3 122776416 122776442 -95260716 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr3 122777455 122777479 -95259679 + AT_rich Low_complexity Low_complexity 1 24 0 1407 230 33 64 chr3 122777905 122778361 -95258797 - L1MD3 LINE L1 -13 7982 7541 551 307 80 24 chr3 122778398 122778610 -95258548 + MIR SINE MIR 18 241 -21 625 254 37 11 chr3 122778639 122778828 -95258330 + L1MC4a LINE L1 7103 7296 -512 3089 170 37 3 chr3 122779137 122779726 -95257432 + L1P LINE L1 11 619 -5527 365 185 15 0 chr3 122780807 122780872 -95256286 - MER5A DNA MER1_type -123 66 1 301 143 0 20 chr3 122780886 122780935 -95256223 + MER5B DNA MER1_type 2 49 -129 3448 184 15 33 chr3 122780956 122781690 -95255468 - L1MB2 LINE L1 -2 6169 5449 270 299 0 0 chr3 122782076 122782143 -95255015 + MIR SINE MIR 60 126 -136 608 270 87 36 chr3 122782992 122783188 -95253970 + MIR SINE MIR 42 247 -15 22 56 0 0 chr3 122783373 122783409 -95253749 + AT_rich Low_complexity Low_complexity 1 36 0 1824 100 83 17 chr3 122784038 122784328 -95252830 + AluSc SINE Alu 1 309 0 685 301 34 38 chr3 122784329 122784568 -95252590 - MIR SINE MIR -7 255 18 1996 115 3 10 chr3 122784956 122785252 -95251906 - AluSg SINE Alu -16 294 1 204 97 0 0 chr3 122787108 122787139 -95250019 + (CA)n Simple_repeat Simple_repeat 2 32 0 205 186 0 0 chr3 122787345 122787388 -95249770 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 2827 19 0 0 chr3 122787483 122787807 -95249351 - L1PA4 LINE L1 -478 5677 5354 3809 36 0 4 chr3 122787807 122788296 -95248862 + L1PA4 LINE L1 5686 6155 0 1573 28 0 0 chr3 122788502 122788684 -95248474 - L1P2 LINE L1 -1901 4245 4064 2111 174 51 7 chr3 122788774 122789189 -95247969 - Tigger2a DNA MER2_type 0 434 2 240 333 10 10 chr3 122789768 122789870 -95247288 + L1ME LINE L1 5486 5587 -577 876 241 21 17 chr3 122789881 122790117 -95247041 - L1PA16 LINE L1 -17 6149 5913 388 193 36 0 chr3 122790120 122790203 -95246955 - L1PA16 LINE L1 -168 5998 5913 * 893 220 22 0 chr3 122790202 122790384 -95246774 - L1PA16 LINE L1 -163 6003 5818 798 146 23 0 chr3 122790542 122790672 -95246486 + MLT1A1 LTR MaLR 4 136 -229 1264 161 4 38 chr3 122790850 122791086 -95246072 + MLT1A1 LTR MaLR 138 365 0 200 140 0 53 chr3 122791188 122791245 -95245913 + (A)n Simple_repeat Simple_repeat 1 54 0 28 61 0 0 chr3 122792306 122792355 -95244803 + AT_rich Low_complexity Low_complexity 1 49 0 1916 203 32 9 chr3 122793729 122794163 -95242995 - L1MA9 LINE L1 -38 6274 5831 186 43 0 0 chr3 122794574 122794597 -95242561 + (A)n Simple_repeat Simple_repeat 1 23 0 185 243 0 162 chr3 122795043 122795179 -95241979 - MIR SINE MIR -96 166 53 2441 170 47 7 chr3 122795438 122795867 -95241291 + Tigger2 DNA MER2_type 2273 2718 0 2687 19 0 0 chr3 122797167 122797476 -95239682 - AluYa5 SINE Alu -2 309 1 237 189 176 0 chr3 122799576 122799650 -95237508 + MLT1J1 LTR MaLR 360 446 0 2149 168 23 28 chr3 122799724 122800152 -95237006 + MSTB LTR MaLR 1 426 0 8685 179 26 3 chr3 122800152 122801699 -95235459 + MSTB-int LTR MaLR 1 1583 -68 1112 66 0 0 chr3 122801700 122801837 -95235321 + AluY SINE Alu 166 302 -9 417 157 0 24 chr3 122801838 122801921 -95235237 + MSTB-int LTR MaLR 1571 1651 0 2071 178 46 12 chr3 122801923 122802333 -95234825 + MSTB LTR MaLR 3 426 0 679 219 0 29 chr3 122802434 122802571 -95234587 - FLAM_C SINE Alu -10 133 1 495 301 35 10 chr3 122802584 122802783 -95234375 - L1ME2 LINE L1 -27 6137 5934 24 85 0 0 chr3 122804844 122804903 -95232255 + AT_rich Low_complexity Low_complexity 1 59 0 266 354 85 32 chr3 122805018 122805430 -95231728 + L2 LINE L2 1076 1509 -1805 300 311 0 0 chr3 122805437 122805511 -95231647 - MER94 DNA DNA -22 112 39 676 326 164 54 chr3 122805707 122806837 -95230321 + L2 LINE L2 1605 2858 -456 299 161 0 12 chr3 122807052 122807133 -95230025 + (TA)n Simple_repeat Simple_repeat 1 80 0 29 28 0 0 chr3 122807586 122807622 -95229536 + AT_rich Low_complexity Low_complexity 1 36 0 2159 194 30 76 chr3 122808890 122809430 -95227728 + MLT2B2 LTR ERVL 1 515 0 4816 156 30 25 chr3 122809505 122810661 -95226497 + L1MA8 LINE L1 4895 6266 -25 22 35 0 0 chr3 122810665 122810694 -95226464 + AT_rich Low_complexity Low_complexity 1 29 0 249 329 0 0 chr3 122810740 122810810 -95226348 + MIR SINE MIR 72 141 -121 4480 27 0 0 chr3 122811640 122812164 -95224994 - L1PA3 LINE L1 -3 6152 5629 561 365 37 54 chr3 122812639 122813230 -95223928 + L3 LINE CR1 899 1479 -98 2884 255 42 44 chr3 122813369 122814152 -95223006 + L1ME1 LINE L1 4394 5177 -1157 1599 177 99 6 chr3 122814152 122814486 -95222672 + MLT1A1 LTR MaLR 1 365 0 2884 255 42 44 chr3 122814486 122815488 -95221670 + L1ME1 LINE L1 5177 6334 0 2972 17 0 17 chr3 122815588 122815943 -95221215 + L1PA2 LINE L1 5802 6150 -5 186 43 0 0 chr3 122815966 122815989 -95221169 + (A)n Simple_repeat Simple_repeat 1 23 0 1025 155 0 0 chr3 122816080 122816241 -95220917 + AluSg/x SINE Alu 136 296 -14 351 44 0 0 chr3 122816789 122816834 -95220324 + (TG)n Simple_repeat Simple_repeat 1 45 0 1401 208 14 17 chr3 122817642 122817936 -95219222 - AluJo SINE Alu -9 293 1 405 299 101 48 chr3 122817936 122818314 -95218844 - L1MEd LINE L1 -4911 1208 811 1728 192 55 18 chr3 122818805 122819250 -95217908 - MER31A LTR ERV1 0 661 6 1382 226 133 29 chr3 122819330 122819804 -95217354 - MER66A LTR ERV1 0 478 97 432 0 0 0 chr3 122819865 122819913 -95217245 + (CA)n Simple_repeat Simple_repeat 2 49 0 226 229 0 62 chr3 122820438 122820534 -95216624 + T-rich Low_complexity Low_complexity 4 93 0 3212 291 81 18 chr3 122820926 122822231 -95214927 - L2 LINE L2 -84 3229 1842 1826 179 23 31 chr3 122822264 122822654 -95214504 - L1MC1 LINE L1 -6 6327 5941 33 25 0 0 chr3 122822667 122822707 -95214451 + AT_rich Low_complexity Low_complexity 1 40 0 581 138 0 9 chr3 122822852 122822961 -95214197 + (TCTG)n Simple_repeat Simple_repeat 3 110 0 543 287 102 14 chr3 122822963 122823179 -95213979 - L2 LINE L2 -1797 1517 1283 23 33 0 0 chr3 122823203 122823233 -95213925 + AT_rich Low_complexity Low_complexity 1 30 0 2303 267 53 24 chr3 122823515 122824413 -95212745 + L1MC4 LINE L1 6411 7361 -681 306 176 0 0 chr3 122824412 122824463 -95212695 - L1MC1 LINE L1 -807 5526 5476 * 329 295 19 0 chr3 122824460 122824565 -95212593 - L1MC4a LINE L1 -200 7608 7502 686 324 91 34 chr3 122824776 122825128 -95212030 - LTR16B LTR ERVL -16 448 77 635 258 114 21 chr3 122825607 122825988 -95211170 - LTR16B LTR ERVL 0 464 3 1330 335 27 46 chr3 122826016 122827208 -95209950 - ERVL LTR ERVL -26 5383 4270 316 362 46 32 chr3 122827199 122827417 -95209741 - HERV16 LTR ERVL -3907 1089 869 * 475 342 105 23 chr3 122827496 122827806 -95209352 - HERV16 LTR ERVL -4225 771 421 2008 138 21 24 chr3 122827806 122828182 -95208976 - THE1C LTR MaLR 0 375 1 475 342 105 23 chr3 122828182 122828263 -95208895 - HERV16 LTR ERVL -4575 421 348 618 346 85 30 chr3 122828356 122828412 -95208746 - LTR16B LTR ERVL -4 460 409 2122 125 3 0 chr3 122828412 122828707 -95208451 + AluSx SINE Alu 1 296 -16 618 346 85 30 chr3 122828707 122829084 -95208074 - LTR16B LTR ERVL -55 409 3 1301 303 52 2 chr3 122829269 122829669 -95207489 - LTR16B LTR ERVL 0 464 45 1180 217 58 85 chr3 122829771 122830181 -95206977 - MLT1C LTR MaLR -2 465 67 368 304 9 89 chr3 122830308 122830532 -95206626 + L2 LINE L2 3080 3285 -28 180 217 0 0 chr3 122830796 122830842 -95206316 + A-rich Low_complexity Low_complexity 1 46 0 255 125 0 0 chr3 122832763 122832803 -95204355 + (CA)n Simple_repeat Simple_repeat 1 40 0 254 268 0 14 chr3 122833174 122833245 -95203913 - Tigger5 DNA MER2_type 0 2323 2254 824 187 0 7 chr3 122833346 122833501 -95203657 - Tigger5 DNA MER2_type -90 2233 2080 460 253 0 11 chr3 122833495 122833590 -95203568 - Tigger5 DNA MER2_type -2229 94 1 * 348 277 97 13 chr3 122834814 122834969 -95202189 - L2 LINE L2 -23 3290 3123 245 266 177 16 chr3 122834979 122835103 -95202055 - L2 LINE L2 -20 3293 3150 193 238 99 109 chr3 122835227 122835328 -95201830 - L2 LINE L2 -175 3138 3039 1905 131 22 0 chr3 122835374 122835695 -95201463 - L1MA3 LINE L1 0 6305 5978 6291 142 40 5 chr3 122835698 122836828 -95200330 - L1MC1 LINE L1 -10 6323 5160 23 54 0 0 chr3 122837002 122837039 -95200119 + AT_rich Low_complexity Low_complexity 1 37 0 17233 25 0 5 chr3 122837039 122839954 -95197204 - L1HS LINE L1 -1 6171 3329 3012 24 0 0 chr3 122839924 122840304 -95196854 + L1HS LINE L1 2980 3359 -2787 * 410 266 50 0 chr3 122840426 122840565 -95196593 - L1M4 LINE L1 -1893 4253 4108 307 220 14 106 chr3 122840565 122840706 -95196452 - L1M4 LINE L1 -2392 3754 3627 4321 238 72 12 chr3 122940716 122942350 -95094808 - L1ME LINE L1 -688 5474 3739 504 208 42 4 chr3 122942348 122942583 -95094575 - L1ME LINE L1 -2989 3157 2872 * 366 239 211 0 chr3 122942680 122942789 -95094369 - MIR SINE MIR -108 154 23 222 288 17 0 chr3 122943663 122943722 -95093436 - MIR SINE MIR -115 147 88 1587 214 42 40 chr3 122943915 122944369 -95092789 - MLT1C LTR MaLR 0 467 13 225 0 0 0 chr3 122944979 122945004 -95092154 + (A)n Simple_repeat Simple_repeat 1 25 0 207 167 0 0 chr3 122945606 122945648 -95091510 + GA-rich Low_complexity Low_complexity 2 43 0 2381 92 0 3 chr3 122947285 122947591 -95089567 + AluY SINE Alu 1 305 -6 276 181 24 24 chr3 122947752 122947835 -95089323 - MER97a DNA MER1_type? -27 867 785 220 216 0 0 chr3 122947842 122947893 -95089265 + A-rich Low_complexity Low_complexity 1 51 0 232 283 33 76 chr3 122948159 122948194 -95088964 + MIR SINE MIR 21 56 -152 1944 146 4 0 chr3 122948194 122948527 -95088631 - AluSx SINE Alu 0 334 1 232 283 33 76 chr3 122948527 122948582 -95088576 + MIR SINE MIR 56 108 -100 273 280 181 6 chr3 122949449 122949631 -95087527 - MER112 DNA MER1_type -41 219 6 1987 169 34 0 chr3 122949636 122949986 -95087172 + MLT1A1 LTR MaLR 3 364 -1 21 57 0 0 chr3 122951179 122951214 -95085944 + AT_rich Low_complexity Low_complexity 1 35 0 641 189 91 11 chr3 122951256 122951431 -95085727 + LTR54B LTR ERV1 308 496 -2 2097 107 24 3 chr3 122951522 122951811 -95085347 + AluSc SINE Alu 1 295 -14 486 263 56 35 chr3 122952062 122952294 -95084864 + L1M4 LINE L1 5078 5314 -832 1120 158 24 20 chr3 122952300 122952553 -95084605 - Tigger2 DNA MER2_type -4 2714 2461 2037 154 20 16 chr3 122952619 122953216 -95083942 - Tigger2 DNA MER2_type -1974 744 101 811 158 7 7 chr3 122953212 122953358 -95083800 + MER39 LTR ERV1 537 682 -25 * 255 65 43 0 chr3 122953366 122953412 -95083746 - Tigger2 DNA MER2_type -2616 102 55 23 33 0 0 chr3 122954713 122954743 -95082415 + AT_rich Low_complexity Low_complexity 1 30 0 381 293 9 0 chr3 122955011 122955117 -95082041 - L2 LINE L2 -311 2961 2855 686 239 109 5 chr3 122955124 122955308 -95081850 - MIR SINE MIR -26 236 34 930 274 7 33 chr3 122955327 122955634 -95081524 - L2 LINE L2 -410 2904 2606 2498 159 2 5 chr3 122956439 122956879 -95080279 - L1PB4 LINE L1 -1 6155 5717 430 298 122 11 chr3 122957634 122957815 -95079343 + MIR SINE MIR 51 251 -11 2580 209 56 77 chr3 122957949 122958100 -95079058 - L1ME1 LINE L1 -6 6160 6007 2009 156 22 8 chr3 122958100 122958458 -95078700 - MLT1A1 LTR MaLR 0 365 3 2580 209 56 77 chr3 122958458 122959099 -95078059 - L1ME1 LINE L1 -159 6007 5385 2380 70 0 10 chr3 122959099 122959412 -95077746 - AluY SINE Alu -1 310 1 2580 209 56 77 chr3 122959412 122959874 -95077284 - L1ME1 LINE L1 -781 5385 4915 1272 284 38 0 chr3 122959877 122960327 -95076831 - L1ME1 LINE L1 -2262 3884 3418 432 167 12 130 chr3 122960324 122960486 -95076672 - L1 LINE L1 -3246 2900 2758 * 1858 126 7 14 chr3 122961532 122961797 -95075361 + AluSq SINE Alu 1 265 -48 1937 119 7 4 chr3 122961797 122962074 -95075084 + AluSx SINE Alu 33 310 -2 1858 126 7 14 chr3 122962074 122962085 -95075073 + AluSq SINE Alu 265 275 -38 217 227 0 0 chr3 122964091 122964135 -95073023 + (CATA)n Simple_repeat Simple_repeat 4 47 0 1847 118 21 39 chr3 122964580 122964918 -95072240 - LTR64 LTR ERVK -226 332 1 2108 131 3 0 chr3 122965035 122965341 -95071817 - AluSx SINE Alu -5 307 1 188 51 0 77 chr3 122965358 122965397 -95071761 + (A)n Simple_repeat Simple_repeat 1 36 0 186 281 70 0 chr3 122965489 122965546 -95071612 + MIR SINE MIR 103 163 -99 381 266 0 32 chr3 122965567 122965661 -95071497 + L2 LINE L2 3172 3262 -10 406 246 181 0 chr3 122967353 122967491 -95069667 + MIR3 SINE MIR 28 190 -18 2423 85 0 3 chr3 122967897 122968202 -95068956 - AluY SINE Alu -7 304 1 249 327 85 56 chr3 122968538 122968844 -95068314 - L2 LINE L2 -1 3312 2998 2264 121 0 0 chr3 122970865 122971172 -95065986 + AluSx SINE Alu 1 307 -5 300 247 67 11 chr3 122972297 122972386 -95064772 - L1MC4 LINE L1 -1337 6705 6612 241 216 0 57 chr3 122972392 122972480 -95064678 + (TA)n Simple_repeat Simple_repeat 1 83 0 341 329 13 26 chr3 122972854 122973009 -95064149 - MIR SINE MIR -41 221 69 291 289 70 16 chr3 122973047 122973175 -95063983 + MIR SINE MIR 78 212 -50 425 249 174 2 chr3 122973350 122973576 -95063582 - MER5C DNA MER1_type 0 324 1 5427 68 38 1 chr3 122974581 122975248 -95061910 + LTR8 LTR ERV1 1 691 0 1956 104 7 10 chr3 122975996 122976285 -95060873 - AluSc SINE Alu -13 296 9 307 213 25 62 chr3 122976828 122976908 -95060250 + MER46C DNA MER2_type 1 77 -261 540 330 47 8 chr3 122977129 122977365 -95059793 + MIR SINE MIR 1 245 -17 807 113 8 2 chr3 122977433 122977674 -95059484 + AluSx SINE Alu 1 301 -11 1412 81 52 19 chr3 122977876 122978086 -95059072 - AluSc SINE Alu -5 304 88 542 244 339 0 chr3 122978122 122978364 -95058794 + MER5C DNA MER1_type 1 324 0 193 348 177 14 chr3 122978364 122978505 -95058653 - MIR3 SINE MIR -26 182 19 2411 63 0 16 chr3 122979327 122979630 -95057528 + AluY SINE Alu 1 298 -13 225 143 41 0 chr3 122981123 122981172 -95055986 + GA-rich Low_complexity Low_complexity 2 52 0 303 300 91 27 chr3 122983001 122983111 -95054047 - L2 LINE L2 -20 3252 3136 572 307 65 77 chr3 122983177 122983620 -95053538 + L2 LINE L2 2835 3272 0 2018 111 30 13 chr3 122984435 122984733 -95052425 - AluSq SINE Alu -10 303 1 372 341 17 17 chr3 122986220 122986393 -95050765 + L1ME LINE L1 5536 5708 -454 427 293 71 0 chr3 122986484 122986624 -95050534 - MIR SINE MIR -105 157 8 201 39 0 0 chr3 122987875 122987901 -95049257 + (CA)n Simple_repeat Simple_repeat 2 27 0 231 167 0 0 chr3 122988637 122988679 -95048479 + GA-rich Low_complexity Low_complexity 2 43 0 298 281 0 50 chr3 122991336 122991457 -95045701 + GA-rich Low_complexity Low_complexity 3 117 0 276 355 28 21 chr3 122992855 122992996 -95044162 - MIR3 SINE MIR -64 144 3 216 0 0 0 chr3 122994043 122994067 -95043091 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 202 333 246 0 chr3 122995320 122995446 -95041712 - MIR SINE MIR -6 256 100 486 286 23 0 chr3 122996397 122996530 -95040628 - MIR SINE MIR -80 182 47 606 174 20 0 chr3 122998191 122998289 -95038869 - MER41E LTR ERV1 0 512 413 328 191 139 25 chr3 122998409 122998541 -95038617 - MER84-int LTR ERV1 -2783 2957 2039 789 307 19 52 chr3 122998599 122999022 -95038136 - MER84-int LTR ERV1 -3958 2718 2310 2359 79 3 10 chr3 122999143 122999448 -95037710 - AluY SINE Alu -8 303 1 293 163 0 0 chr3 122999456 122999505 -95037653 - MER41E LTR ERV1 -463 49 1 2476 162 17 2 chr3 122999907 123000321 -95036837 + L1P4 LINE L1 3929 4348 -1798 244 176 78 0 chr3 123000333 123000384 -95036774 - L1 LINE L1 -1798 4348 4294 3475 137 32 5 chr3 123000400 123001459 -95035699 + L1P4 LINE L1 4711 5795 -366 1720 134 0 0 chr3 123001447 123001694 -95035464 + L1P LINE L1 4020 4266 -1880 * 7564 181 14 16 chr3 123001700 123004204 -95032954 - L1PB1 LINE L1 0 6151 3658 416 320 153 0 chr3 123005436 123005658 -95031500 + MIR SINE MIR 3 258 -4 261 256 146 12 chr3 123005713 123005795 -95031363 + L2 LINE L2 3179 3271 -1 1576 103 0 0 chr3 123007533 123007737 -95029421 - AluSq SINE Alu -109 204 1 371 192 114 11 chr3 123008723 123008810 -95028348 + MER33 DNA MER1_type 1 88 -93 * 632 177 24 8 chr3 123008809 123008933 -95028225 - MER34C LTR ERV1 -455 130 5 899 172 42 77 chr3 123009053 123009314 -95027844 + MER33 DNA MER1_type 73 324 0 377 258 88 63 chr3 123009334 123009493 -95027665 + MIR SINE MIR 9 171 -91 2188 115 7 0 chr3 123009781 123010076 -95027082 - AluSq SINE Alu -14 299 3 1516 241 160 31 chr3 123010089 123010328 -95026830 - L1ME3A LINE L1 -8 6162 5955 5074 75 81 2 chr3 123010328 123010968 -95026190 - LTR8 LTR ERV1 0 691 1 1516 241 160 31 chr3 123010968 123011405 -95025753 - L1ME3A LINE L1 -215 5955 5378 41645 38 3 3 chr3 123011593 123016579 -95020579 - L1P LINE L1 -1161 4985 2 280 222 44 0 chr3 123016708 123016798 -95020360 + Tigger2 DNA MER2_type 1 94 -2624 12186 201 9 7 chr3 123016931 123019788 -95017370 - L1PA13 LINE L1 -2192 4605 1734 281 222 0 16 chr3 123019794 123019857 -95017301 + MER20 DNA MER1_type 80 141 -78 973 247 75 23 chr3 123020078 123020466 -95016692 - MSTA LTR MaLR -20 408 1 924 215 10 24 chr3 123020481 123020621 -95016537 + MER3 DNA MER1_type 1 139 -70 1713 143 98 0 chr3 123020621 123020919 -95016239 - AluSx SINE Alu 0 312 1 924 215 10 24 chr3 123020919 123020987 -95016171 + MER3 DNA MER1_type 139 206 -3 344 263 111 0 chr3 123020987 123021086 -95016072 + L2 LINE L2 3200 3309 -4 348 286 31 10 chr3 123022375 123022473 -95014685 - MER5B DNA MER1_type -16 162 63 24 53 0 0 chr3 123022783 123022821 -95014337 + AT_rich Low_complexity Low_complexity 1 38 0 878 107 0 0 chr3 123022971 123023092 -95014066 - L1MB1 LINE L1 0 6168 6048 358 272 232 2 chr3 123023317 123023447 -95013711 + MIR SINE MIR 21 173 -81 1889 170 0 0 chr3 123025133 123025415 -95011743 + AluSx SINE Alu 2 283 -29 439 191 0 0 chr3 123025347 123025415 -95011743 + AluSg/x SINE Alu 214 316 0 241 86 0 0 chr3 123025415 123025450 -95011708 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 298 302 47 0 chr3 123027457 123027563 -95009595 - L3 LINE CR1 -112 1465 1355 22 80 0 0 chr3 123028024 123028074 -95009084 + AT_rich Low_complexity Low_complexity 1 50 0 1879 128 31 31 chr3 123028076 123028365 -95008793 + AluSq SINE Alu 2 290 -23 224 173 39 0 chr3 123028365 123028417 -95008741 + (CATATA)n Simple_repeat Simple_repeat 1 54 0 312 145 26 40 chr3 123028425 123028501 -95008657 + L1MCa LINE L1 1994 2068 -4358 308 293 87 13 chr3 123028426 123028576 -95008582 - L1MC4 LINE L1 -1343 6699 6539 * 2487 87 0 0 chr3 123028852 123029186 -95007972 - HERVL LTR ERVL -2654 3000 2667 1608 163 10 77 chr3 123031486 123032003 -95005155 - HERVL LTR ERVL -2975 2679 2198 1063 44 0 25 chr3 123032121 123032281 -95004877 - L1P LINE L1 -3095 3051 2896 * 1618 158 15 3 chr3 123032280 123032608 -95004550 + L1 LINE L1 3676 4007 -2139 16588 47 61 4 chr3 123032614 123034886 -95002272 + L1P LINE L1 3 2403 -3743 795 205 30 3 chr3 123035110 123035358 -95001800 - LTR37A LTR ERV1 0 426 212 2116 110 0 0 chr3 123035358 123035631 -95001527 + AluSx SINE Alu 1 273 -39 260 247 25 0 chr3 123035669 123035750 -95001408 - LTR37A LTR ERV1 -249 177 95 238 196 0 0 chr3 123035759 123035805 -95001353 + MER34 LTR ERV1 10 55 -487 246 122 20 0 chr3 123035806 123035855 -95001303 + MER39 LTR ERV1 599 648 -59 257 325 0 0 chr3 123035895 123035972 -95001186 + MIR SINE MIR 80 156 -106 1894 188 48 70 chr3 123036112 123036594 -95000564 + MLT1D LTR MaLR 1 471 -34 281 208 10 99 chr3 123036594 123036695 -95000463 + MER39B LTR ERV1 1 92 -561 * 2489 123 8 70 chr3 123036676 123036991 -95000167 + MER39 LTR ERV1 265 543 -164 2203 144 0 3 chr3 123036991 123037304 -94999854 - AluSx SINE Alu 0 312 1 2489 123 8 70 chr3 123037304 123037460 -94999698 + MER39 LTR ERV1 543 707 0 281 130 0 0 chr3 123037962 123038008 -94999150 + Alu SINE Alu 240 285 -15 28 29 0 0 chr3 123038008 123038043 -94999115 + AT_rich Low_complexity Low_complexity 1 35 0 464 226 9 43 chr3 123038546 123038661 -94998497 + MIR3 SINE MIR 10 120 -88 307 300 229 19 chr3 123038661 123038928 -94998230 - LTR16A LTR ERVL 0 450 128 595 238 117 90 chr3 123039110 123039623 -94997535 - MLT1H LTR MaLR -22 527 1 206 255 102 61 chr3 123039714 123039812 -94997346 + L2 LINE L2 3211 3312 -1 36 40 0 0 chr3 123040175 123040225 -94996933 + AT_rich Low_complexity Low_complexity 1 50 0 20283 41 5 1 chr3 123040395 123043057 -94994101 + L1P LINE L1 2503 5175 -971 1347 275 112 28 chr3 123043228 123043989 -94993169 - L1MC4a LINE L1 -1671 6137 5313 267 354 20 0 chr3 123044066 123044165 -94992993 - MER5B DNA MER1_type -68 110 10 327 379 39 20 chr3 123045021 123045174 -94991984 - L2 LINE L2 -10 3262 3107 467 328 56 6 chr3 123045412 123045592 -94991566 - MER5A DNA MER1_type 0 189 1 409 288 145 76 chr3 123046015 123046408 -94990750 - L2 LINE L2 -2 3311 2892 405 359 13 26 chr3 123046411 123046642 -94990516 - L2 LINE L2 -568 2746 2519 591 249 149 5 chr3 123046642 123046797 -94990361 - L2 LINE L2 -923 2391 2193 1493 99 40 9 chr3 123046797 123047020 -94990138 - MER30 DNA MER1_type 0 230 1 591 249 149 5 chr3 123047020 123047085 -94990073 - L2 LINE L2 -1121 2193 2139 5215 159 28 18 chr3 123047839 123049417 -94987741 + L1PA16 LINE L1 4573 6157 -9 29 47 0 0 chr3 123049417 123049460 -94987698 + AT_rich Low_complexity Low_complexity 1 43 0 3820 165 229 10 chr3 123049596 123050634 -94986524 + L1PBa LINE L1 493 1758 -5105 6622 83 6 0 chr3 123050634 123051540 -94985618 + HERVL LTR ERVL 1396 2306 -3348 1921 107 16 69 chr3 123051988 123052306 -94984852 + AluSx SINE Alu 1 301 -11 389 289 58 32 chr3 123053048 123053204 -94983954 - L2 LINE L2 0 3313 3154 2390 62 0 23 chr3 123055102 123055408 -94981750 - AluY SINE Alu -12 299 1 426 304 121 18 chr3 123055513 123055737 -94981421 - MIR SINE MIR -14 248 2 2464 171 41 45 chr3 123055879 123056392 -94980766 + MLT2B2 LTR ERVL 5 515 0 419 213 75 0 chr3 123056396 123056490 -94980668 - MER20 DNA MER1_type -22 197 97 420 273 40 34 chr3 123056556 123056733 -94980425 - MLT1J1 LTR MaLR -252 198 19 2289 111 0 3 chr3 123056844 123057150 -94980008 - AluSx SINE Alu -7 305 1 2002 153 0 3 chr3 123057745 123058058 -94979100 + AluSx SINE Alu 1 312 0 368 332 158 0 chr3 123058529 123058719 -94978439 - MIR SINE MIR 0 262 43 535 217 110 107 chr3 123058737 123059073 -94978085 - MER46C DNA MER2_type 0 338 2 3594 99 50 9 chr3 123059520 123060154 -94977004 - L1PBa LINE L1 -4307 2556 1897 216 158 0 0 chr3 123060193 123060231 -94976927 + (CATA)n Simple_repeat Simple_repeat 2 39 0 1740 81 31 8 chr3 123060240 123060498 -94976660 - MLT2A1 LTR ERVL -180 264 1 3443 75 6 22 chr3 123060498 123061041 -94976117 - HERVL-A1 LTR ERVL 0 5654 5121 194 139 47 0 chr3 123061273 123061316 -94975842 + (CATATA)n Simple_repeat Simple_repeat 4 48 0 368 219 135 0 chr3 123061822 123061918 -94975240 - L2 LINE L2 0 3313 3205 5190 36 3 6 chr3 123062320 123062963 -94974195 + L1PA3 LINE L1 5515 6155 0 241 309 15 0 chr3 123063030 123063098 -94974060 - L2 LINE L2 -8 3305 3237 339 167 0 30 chr3 123063181 123063247 -94973911 + MER21B LTR ERV1 8 71 -792 971 147 11 6 chr3 123063250 123063427 -94973731 + L1P LINE L1 3991 4168 -1978 5310 209 7 14 chr3 123063565 123064884 -94972274 - L1 LINE L1 -2566 3580 2272 250 314 26 64 chr3 123065223 123065379 -94971779 - L3 LINE CR1 -830 747 598 252 231 0 0 chr3 123065441 123065519 -94971639 + CT-rich Low_complexity Low_complexity 2 79 0 477 370 63 19 chr3 123065674 123066044 -94971114 - L1MD2 LINE L1 -224 5940 5555 964 264 18 7 chr3 123066208 123066481 -94970677 - MLT1F LTR MaLR -168 374 99 349 250 12 0 chr3 123066623 123066795 -94970363 + (TA)n Simple_repeat Simple_repeat 1 174 0 494 353 106 52 chr3 123067018 123067645 -94969513 - L2 LINE L2 0 3272 2617 676 193 0 0 chr3 123067778 123067887 -94969271 - FRAM SINE Alu -58 118 10 782 164 25 6 chr3 123068026 123068185 -94968973 + L1MB3 LINE L1 5939 6100 -83 436 258 101 17 chr3 123068932 123069110 -94968048 - MIR SINE MIR -1 261 69 682 271 23 37 chr3 123069608 123069822 -94967336 - MIR SINE MIR -21 241 31 564 49 25 0 chr3 123070848 123070929 -94966229 + LTR64 LTR ERVK 476 558 0 857 218 83 0 chr3 123070958 123071151 -94966007 + MER3 DNA MER1_type 1 209 0 334 331 25 25 chr3 123072630 123072787 -94964371 + MER5A DNA MER1_type 3 159 -30 22 35 0 0 chr3 123073185 123073214 -94963944 + AT_rich Low_complexity Low_complexity 1 29 0 1035 241 41 10 chr3 123073600 123073895 -94963263 - LTR16C LTR ERVL -12 479 176 2609 136 42 35 chr3 123073896 123074296 -94962862 + LTR22A LTR ERVK 1 406 -52 2349 104 0 3 chr3 123074296 123074605 -94962553 - AluSc SINE Alu -1 308 1 2609 136 42 35 chr3 123074605 123074659 -94962499 + LTR22A LTR ERVK 406 458 0 1142 164 51 99 chr3 123075160 123075592 -94961566 + Charlie1 DNA MER1_type 2351 2761 0 2140 158 33 23 chr3 123075647 123076077 -94961081 - MER57B LTR ERV1 0 434 1 296 299 47 0 chr3 123076100 123076207 -94960951 - MERVL LTR ERVL -640 4845 4734 2103 131 3 0 chr3 123076260 123076558 -94960600 + AluSx SINE Alu 1 299 -13 899 243 29 29 chr3 123076787 123077027 -94960131 - L1ME1 LINE L1 -5 6161 5919 1991 148 33 14 chr3 123077027 123077393 -94959765 + MER93b LTR ERV1 1 373 0 899 243 29 29 chr3 123077393 123077465 -94959693 - L1ME1 LINE L1 -246 5920 5849 470 99 0 14 chr3 123077470 123077541 -94959617 + THE1C LTR MaLR 1 70 -305 186 125 0 0 chr3 123080436 123080460 -94956698 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 25 31 0 0 chr3 123080829 123080861 -94956297 + AT_rich Low_complexity Low_complexity 1 32 0 271 213 80 13 chr3 123081058 123081133 -94956025 + Tigger5 DNA MER2_type 2244 2323 0 218 411 7 27 chr3 123081285 123081431 -94955727 - L2 LINE L2 -3 3269 3127 2035 120 18 0 chr3 123181621 123181897 -94855261 - AluSx SINE Alu -31 281 1 245 277 6 102 chr3 123183124 123183290 -94853868 + MIR3 SINE MIR 53 202 -6 237 159 0 0 chr3 123183345 123183389 -94853769 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 2470 91 0 0 chr3 123186210 123186517 -94850641 - AluSq SINE Alu -6 307 1 431 284 114 40 chr3 123186741 123186942 -94850216 - MIR SINE MIR -32 230 15 265 230 141 122 chr3 123187928 123188029 -94849129 - L3 LINE CR1 -98 1479 1381 2421 106 44 8 chr3 123188029 123188389 -94848769 - THE1C LTR MaLR -2 373 1 265 230 141 122 chr3 123188389 123188500 -94848658 - L3 LINE CR1 -196 1381 1263 571 170 18 0 chr3 123188758 123188870 -94848288 + MER94 DNA DNA 1 114 -20 181 385 88 22 chr3 123188929 123189020 -94848138 + L2 LINE L2 3133 3229 -43 206 81 27 0 chr3 123189710 123189747 -94847411 + (TTCG)n Simple_repeat Simple_repeat 3 40 0 1902 133 24 3 chr3 123189749 123190043 -94847115 - AluSx SINE Alu -12 300 1 343 356 61 44 chr3 123190606 123190786 -94846372 + L2 LINE L2 3044 3226 -46 537 302 35 0 chr3 123191035 123191203 -94845955 + MIR SINE MIR 53 227 -35 587 247 29 40 chr3 123191352 123191526 -94845632 - MER5A DNA MER1_type 0 189 18 387 296 78 7 chr3 123192636 123192778 -94844380 + MIR SINE MIR 47 198 -64 192 184 0 0 chr3 123192787 123192836 -94844322 + (TTATA)n Simple_repeat Simple_repeat 4 52 0 242 337 23 12 chr3 123193394 123193480 -94843678 + L2 LINE L2 3186 3272 0 321 247 0 45 chr3 123193698 123193787 -94843371 - MIR3 SINE MIR -3 205 121 2130 104 20 1 chr3 123197539 123197889 -94839269 - L1MCa LINE L1 -4199 2227 1705 267 288 110 0 chr3 123201415 123201533 -94835625 - LTR33A LTR ERVL -170 353 223 292 198 0 99 chr3 123202244 123202325 -94834833 + MER112 DNA MER1_type 5 77 -183 190 233 0 0 chr3 123202567 123202610 -94834548 - L2 LINE L2 0 3272 3230 2071 118 0 3 chr3 123203323 123203610 -94833548 - AluSg SINE Alu -24 286 1 242 289 12 12 chr3 123203612 123203695 -94833463 + CT-rich Low_complexity Low_complexity 3 85 0 383 313 71 0 chr3 123204093 123204205 -94832953 + L2 LINE L2 3145 3264 -8 2230 335 94 21 chr3 123204287 123205751 -94831407 + L2 LINE L2 1102 2672 -642 2839 206 31 22 chr3 123205782 123206492 -94830666 - L1MD2 LINE L1 -10 6349 5634 450 282 162 40 chr3 123206494 123207004 -94830154 + L2 LINE L2 2694 3259 -54 225 0 0 0 chr3 123208408 123208433 -94828725 + (CA)n Simple_repeat Simple_repeat 2 26 0 348 345 128 53 chr3 123210163 123210768 -94826390 + L2 LINE L2 2624 3267 -5 1017 176 0 10 chr3 123213676 123213869 -94823289 - MER3 DNA MER1_type -18 191 1 951 180 87 24 chr3 123215198 123215404 -94821754 - MER20 DNA MER1_type 0 219 1 380 255 113 0 chr3 123215482 123215588 -94821570 - L2 LINE L2 -6 3307 3190 324 338 45 0 chr3 123216173 123216306 -94820852 + L2 LINE L2 3167 3305 -8 2176 108 7 3 chr3 123216306 123216602 -94820556 + AluSg1 SINE Alu 1 297 -12 28 0 0 0 chr3 123218789 123218817 -94818341 + AT_rich Low_complexity Low_complexity 1 28 0 387 273 20 71 chr3 123222012 123222210 -94814948 + L2 LINE L2 3082 3269 -44 371 326 27 16 chr3 123222945 123223129 -94814029 + L1MC4a LINE L1 4981 5166 -980 1592 281 69 20 chr3 123223211 123223973 -94813185 + L1MC4a LINE L1 5265 5481 -673 37 39 0 0 chr3 123224039 123224090 -94813068 + AT_rich Low_complexity Low_complexity 1 51 0 33 56 0 0 chr3 123224515 123224569 -94812589 + AT_rich Low_complexity Low_complexity 1 54 0 199 260 68 41 chr3 123224599 123224672 -94812486 + L3 LINE CR1 226 300 -1277 26 64 0 0 chr3 123224703 123224750 -94812408 + AT_rich Low_complexity Low_complexity 1 47 0 309 335 100 42 chr3 123225025 123225476 -94811682 - L2 LINE L2 0 3313 2837 210 304 245 0 chr3 123225501 123225603 -94811555 - L2 LINE L2 -234 3079 2953 2005 95 4 4 chr3 123226959 123227222 -94809936 + AluSc SINE Alu 39 301 -8 2319 93 3 3 chr3 123227802 123228114 -94809044 + AluSp SINE Alu 1 312 -1 24 53 0 0 chr3 123228646 123228684 -94808474 + AT_rich Low_complexity Low_complexity 1 38 0 24 32 0 0 chr3 123229489 123229520 -94807638 + AT_rich Low_complexity Low_complexity 1 31 0 556 278 72 0 chr3 123230565 123230745 -94806413 - MIR SINE MIR -4 258 66 300 289 70 18 chr3 123230930 123231044 -94806114 + MIR SINE MIR 99 218 -44 386 82 28 28 chr3 123234902 123234981 -94802177 - MSTB2 LTR MaLR 0 457 350 588 244 105 77 chr3 123235174 123235747 -94801411 - L1ME4a LINE L1 -56 6065 5477 472 308 19 13 chr3 123236269 123236428 -94800730 - MIR3 SINE MIR -14 194 35 26 0 0 0 chr3 123236866 123236892 -94800266 + AT_rich Low_complexity Low_complexity 1 26 0 236 170 0 57 chr3 123237358 123237411 -94799747 - L2 LINE L2 0 3313 3264 23 0 0 0 chr3 123237478 123237501 -94799657 + AT_rich Low_complexity Low_complexity 1 23 0 689 218 43 5 chr3 123237502 123237713 -94799445 + AluYb8 SINE Alu 3 221 -97 2528 167 45 2 chr3 123238241 123238689 -94798469 + MLT1C LTR MaLR 1 467 0 309 207 0 0 chr3 123238727 123238785 -94798373 - L2 LINE L2 -1 3312 3255 519 286 37 31 chr3 123238888 123239049 -94798109 - L2 LINE L2 0 3313 3152 248 316 160 15 chr3 123239468 123239731 -94797427 - L1ME4a LINE L1 -62 6059 5759 517 294 117 52 chr3 123240061 123240565 -94796593 - L1ME4a LINE L1 -94 6027 5491 23 78 0 0 chr3 123240659 123240710 -94796448 + AT_rich Low_complexity Low_complexity 1 51 0 27 0 0 0 chr3 123242043 123242070 -94795088 + AT_rich Low_complexity Low_complexity 1 27 0 209 317 0 0 chr3 123242763 123242823 -94794335 - L2 LINE L2 -78 3235 3176 241 268 189 37 chr3 123243013 123243177 -94793981 - MIR SINE MIR -71 191 3 229 150 25 0 chr3 123243318 123243358 -94793800 - MIR SINE MIR -107 155 115 313 237 40 13 chr3 123245002 123245078 -94792080 + L2 LINE L2 3192 3269 -3 805 324 93 16 chr3 123245472 123245839 -94791319 + L3b LINE CR1 1180 1574 -9 279 0 0 0 chr3 123247506 123247537 -94789621 + (TGG)n Simple_repeat Simple_repeat 3 33 0 694 103 43 0 chr3 123248195 123248311 -94788847 - L1P LINE L1 -3878 2268 2148 7256 274 70 15 chr3 123248359 123250738 -94786420 - L2 LINE L2 -243 3070 560 1991 146 0 7 chr3 123250912 123251207 -94785951 - AluSx SINE Alu -19 293 1 337 265 151 78 chr3 123251253 123251472 -94785686 + L2 LINE L2 3079 3313 0 28 29 0 0 chr3 123252439 123252474 -94784684 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 123252706 123252729 -94784429 + AT_rich Low_complexity Low_complexity 1 23 0 32 0 0 0 chr3 123253348 123253380 -94783778 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr3 123254422 123254446 -94782712 + AT_rich Low_complexity Low_complexity 1 24 0 431 269 119 12 chr3 123254822 123254982 -94782176 + MIR3 SINE MIR 19 195 -13 1041 269 77 10 chr3 123255258 123255629 -94781529 + MLT1J1 LTR MaLR 3 442 -4 196 273 121 15 chr3 123255709 123255775 -94781383 + L2 LINE L2 3187 3259 -54 3716 154 8 5 chr3 123256143 123256742 -94780416 + MER7C DNA MER2_type 1 601 -1 553 320 101 48 chr3 123256999 123257515 -94779643 + L2 LINE L2 1981 2523 -791 31689 100 7 20 chr3 123257882 123264337 -94772821 + L1PA7 LINE L1 3 6469 0 280 252 137 38 chr3 123265614 123265745 -94771413 - MIR SINE MIR -46 216 73 1962 88 13 42 chr3 123266101 123266408 -94770750 - L1PA13 LINE L1 0 6163 5866 463 139 0 0 chr3 123266408 123266487 -94770671 + L1P LINE L1 3307 3385 -2761 183 410 12 0 chr3 123266573 123266656 -94770502 - MIR SINE MIR -92 116 33 220 304 170 9 chr3 123268007 123268119 -94769039 + MIR SINE MIR 76 205 -57 262 291 38 13 chr3 123271253 123271332 -94765826 + L2 LINE L2 2776 2856 -458 342 98 0 0 chr3 123273170 123273221 -94763937 + (TATG)n Simple_repeat Simple_repeat 2 52 0 373 333 63 40 chr3 123274612 123274915 -94762243 + L2 LINE L2 1156 1465 -1849 21 36 0 0 chr3 123275198 123275226 -94761932 + AT_rich Low_complexity Low_complexity 1 28 0 259 125 0 0 chr3 123275310 123275350 -94761808 - L1ME1 LINE L1 -5 6161 6122 24 0 0 0 chr3 123275500 123275524 -94761634 + GC_rich Low_complexity Low_complexity 1 24 0 1137 228 93 31 chr3 123276112 123276436 -94760722 + MER2 DNA MER2_type 1 344 0 285 203 17 0 chr3 123277082 123277141 -94760017 - L2 LINE L2 -4 3309 3250 630 0 0 0 chr3 123277497 123277567 -94759591 + (TTTC)n Simple_repeat Simple_repeat 2 71 0 267 257 22 80 chr3 123277795 123278021 -94759137 - L1MEd LINE L1 -4915 1204 992 182 37 37 0 chr3 123278312 123278339 -94758819 + (TTTTG)n Simple_repeat Simple_repeat 4 31 0 717 151 0 0 chr3 123278849 123278955 -94758203 + Tigger1 DNA MER2_type 14 119 -2299 268 306 122 48 chr3 123279029 123279258 -94757900 - MIR SINE MIR -11 251 6 219 333 28 0 chr3 123281194 123281266 -94755892 + L2 LINE L2 2550 2623 -691 187 264 0 57 chr3 123281289 123281342 -94755816 + L2 LINE L2 2924 2973 -299 413 231 25 123 chr3 123281595 123281798 -94755360 - L2 LINE L2 -4 3309 3127 196 309 0 0 chr3 123282523 123282578 -94754580 + MIR SINE MIR 86 140 -122 258 393 0 0 chr3 123283126 123283243 -94753915 + L2 LINE L2 2227 2343 -971 572 303 114 32 chr3 123283380 123284571 -94752587 - L1M4 LINE L1 -1988 4158 2870 1206 283 14 55 chr3 123286727 123287256 -94749902 - L2 LINE L2 -36 3277 2772 198 345 126 18 chr3 123287503 123287726 -94749432 - L2 LINE L2 -337 2977 2731 2358 77 3 3 chr3 123288129 123288427 -94748731 - AluSp SINE Alu -15 298 1 288 306 97 15 chr3 123289177 123289311 -94747847 - MER5A DNA MER1_type -44 145 1 396 97 0 0 chr3 123290879 123290941 -94746217 + (CAG)n Simple_repeat Simple_repeat 1 62 0 206 352 48 9 chr3 123292562 123292667 -94744491 + L2 LINE L2 2600 2708 -606 417 235 41 133 chr3 123294689 123294885 -94742273 - MIR SINE MIR -1 261 84 2100 81 3 54 chr3 123295558 123295891 -94741267 - AluSx SINE Alu 0 318 1 692 328 125 52 chr3 123297311 123298188 -94738970 + L2 LINE L2 2037 2977 -337 1419 181 0 31 chr3 123298537 123298791 -94738367 - AluJo SINE Alu -66 246 1 217 269 0 0 chr3 123298919 123298971 -94738187 - MIR SINE MIR -108 154 103 2310 104 3 0 chr3 123300516 123300825 -94736333 - AluSp SINE Alu -3 310 1 21 36 0 0 chr3 123301343 123301371 -94735787 + AT_rich Low_complexity Low_complexity 1 28 0 534 258 90 17 chr3 123306494 123306672 -94730486 + MIR SINE MIR 72 262 0 588 274 44 34 chr3 123308139 123308343 -94728815 + MIR3 SINE MIR 3 208 0 687 291 91 4 chr3 123309340 123309570 -94727588 + MIR SINE MIR 13 262 0 21 36 0 0 chr3 123309716 123309744 -94727414 + AT_rich Low_complexity Low_complexity 1 28 0 1636 211 79 171 chr3 123309959 123310108 -94727050 - LTR41 LTR ERVL -1 772 611 1550 181 60 0 chr3 123310108 123310389 -94726769 + AluJb SINE Alu 1 298 -14 1636 211 79 171 chr3 123310389 123311089 -94726069 - LTR41 LTR ERVL -162 611 1 2372 92 13 0 chr3 123311617 123311922 -94725236 - AluSg SINE Alu 0 310 2 349 269 65 19 chr3 123314314 123314422 -94722736 - MIR3 SINE MIR -5 203 91 412 320 65 55 chr3 123314743 123315052 -94722106 + L1M3c LINE L1 173 484 -5829 3296 245 74 18 chr3 123315557 123317139 -94720019 + L1M3c LINE L1 911 2488 -3894 241 26 53 0 chr3 123317139 123317177 -94719981 + (CAA)n Simple_repeat Simple_repeat 2 41 0 3296 245 74 18 chr3 123317177 123317381 -94719777 + L1M3c LINE L1 2488 2679 -3703 633 258 171 53 chr3 123318201 123318729 -94718429 + MLT1L LTR MaLR 19 608 -7 431 299 0 22 chr3 123320762 123320896 -94716262 - MER94 DNA DNA -2 132 2 188 393 0 0 chr3 123321209 123321265 -94715893 + MIR SINE MIR 46 101 -161 27 62 0 0 chr3 123322044 123322092 -94715066 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr3 123323321 123323342 -94713816 + AT_rich Low_complexity Low_complexity 1 21 0 1115 146 6 0 chr3 123324731 123324902 -94712256 + L1PA16 LINE L1 5389 5560 -606 666 144 23 45 chr3 123324902 123325033 -94712125 + L1PA16 LINE L1 6029 6157 -9 22 56 0 0 chr3 123325243 123325279 -94711879 + AT_rich Low_complexity Low_complexity 1 36 0 229 26 53 0 chr3 123327174 123327212 -94709946 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 2282 79 0 0 chr3 123327212 123327491 -94709667 - AluY SINE Alu -32 279 1 295 373 48 8 chr3 123327780 123327906 -94709252 + MIR SINE MIR 20 150 -112 29 60 0 0 chr3 123328380 123328430 -94708728 + AT_rich Low_complexity Low_complexity 1 50 0 218 317 39 19 chr3 123328512 123328616 -94708542 - MIR SINE MIR 0 262 157 228 111 0 0 chr3 123331785 123331821 -94705337 + (A)n Simple_repeat Simple_repeat 1 36 0 1703 224 92 45 chr3 123332251 123332826 -94704332 - L1ME2 LINE L1 0 6098 5497 6077 253 74 57 chr3 123332827 123335472 -94701686 - L1ME2 LINE L1 -1389 4691 1957 2780 19 0 0 chr3 123335472 123335786 -94701372 - AluYb8 SINE Alu -4 314 1 6077 253 74 57 chr3 123335786 123336979 -94700179 - L1ME2 LINE L1 -4123 1957 785 1009 142 0 26 chr3 123336990 123337145 -94700013 - AluSg/x SINE Alu -24 288 138 391 258 99 28 chr3 123337181 123337394 -94699764 - L1ME2 LINE L1 -5279 791 564 539 296 95 60 chr3 123337605 123338058 -94699100 - L1ME2 LINE L1 -5539 531 63 213 320 62 0 chr3 123338572 123338669 -94698489 - MIR SINE MIR -38 224 122 36 0 0 0 chr3 123340204 123340240 -94696918 + AT_rich Low_complexity Low_complexity 1 36 0 7808 17 37 0 chr3 123342139 123343136 -94694022 - L1PA2 LINE L1 -1 6154 5149 9068 29 0 0 chr3 123343136 123344224 -94692934 + L1P LINE L1 1501 2588 -3558 216 0 0 0 chr3 123344840 123344864 -94692294 + (CA)n Simple_repeat Simple_repeat 2 25 0 208 236 146 0 chr3 123345132 123345187 -94691971 + L2 LINE L2 3208 3270 -2 2045 132 6 52 chr3 123345339 123345703 -94691455 + MER7A DNA MER2_type 1 345 -1 975 39 77 8 chr3 123347329 123347459 -94689699 + MER85 DNA T2_type 1 139 0 628 253 41 0 chr3 123348446 123348616 -94688542 + MIR SINE MIR 18 194 -68 21 36 0 0 chr3 123348995 123349023 -94688135 + AT_rich Low_complexity Low_complexity 1 28 0 747 177 66 97 chr3 123349280 123349506 -94687652 + MER20 DNA MER1_type 1 219 0 881 171 29 12 chr3 123351497 123351667 -94685491 + MER69A DNA AcHobo 1 173 -4 206 276 181 26 chr3 123352954 123353070 -94684088 + MIR SINE MIR 20 153 -109 277 296 99 42 chr3 123353121 123353263 -94683895 + MER5B DNA MER1_type 27 176 -2 206 237 61 123 chr3 123353554 123353668 -94683490 + MIR SINE MIR 155 261 -1 180 152 0 0 chr3 123355078 123355111 -94682047 + (CATA)n Simple_repeat Simple_repeat 2 34 0 235 49 49 0 chr3 123355287 123355328 -94681830 + (TA)n Simple_repeat Simple_repeat 2 44 0 31 0 0 0 chr3 123355331 123355362 -94681796 + AT_rich Low_complexity Low_complexity 1 31 0 202 200 0 0 chr3 123356083 123356118 -94681040 + (CAA)n Simple_repeat Simple_repeat 1 35 0 899 255 51 0 chr3 123356120 123356336 -94680822 - MIR SINE MIR 0 262 36 534 271 182 0 chr3 123356473 123356643 -94680515 + MIR SINE MIR 3 203 -59 209 231 164 29 chr3 123356805 123356909 -94680249 - MIR SINE MIR -16 246 129 195 248 121 85 chr3 123356920 123357008 -94680150 - MIR SINE MIR -3 259 163 2266 87 7 0 chr3 123357008 123357307 -94679851 - AluSc SINE Alu -8 301 1 195 248 121 85 chr3 123357307 123357359 -94679799 - MIR SINE MIR -99 163 114 1944 167 27 3 chr3 123357546 123357875 -94679283 + MER1B DNA MER1_type 1 337 0 6699 70 2 2 chr3 123359290 123360520 -94676638 + L1PA7 LINE L1 4912 6140 -14 222 290 63 72 chr3 123361255 123361395 -94675763 - MIR SINE MIR -7 255 116 2175 116 0 3 chr3 123361395 123361697 -94675461 - AluSx SINE Alu -11 301 1 222 290 63 72 chr3 123361697 123361777 -94675381 - MIR SINE MIR -146 116 37 382 239 158 43 chr3 123361892 123362126 -94675032 - MIR SINE MIR 0 262 2 227 306 0 24 chr3 123362135 123362220 -94674938 + MIR SINE MIR 174 256 -6 239 306 0 14 chr3 123363084 123363156 -94674002 + MLT1H1 LTR MaLR 47 117 -438 212 184 20 0 chr3 123364609 123364658 -94672500 + T-rich Low_complexity Low_complexity 5 54 0 22 0 0 0 chr3 123366052 123366074 -94671084 + AT_rich Low_complexity Low_complexity 1 22 0 300 91 0 0 chr3 123367166 123367210 -94669948 + (CAA)n Simple_repeat Simple_repeat 1 44 0 198 103 0 0 chr3 123367846 123367875 -94669283 + (A)n Simple_repeat Simple_repeat 1 29 0 2088 128 0 0 chr3 123368184 123368497 -94668661 + AluSx SINE Alu 1 312 0 962 93 7 0 chr3 123368499 123368639 -94668519 + L1PA16 LINE L1 6026 6166 0 420 243 116 21 chr3 123371514 123371703 -94665455 + L1MC5 LINE L1 7726 7932 -29 440 251 195 34 chr3 123371745 123372124 -94665034 + L1ME4a LINE L1 5680 6119 -2 237 351 0 11 chr3 123373695 123373789 -94663369 + MIR SINE MIR 94 186 -76 22 0 0 0 chr3 123375549 123375571 -94661587 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 123375856 123375877 -94661281 + AT_rich Low_complexity Low_complexity 1 21 0 234 128 0 0 chr3 123377035 123377074 -94660084 + (GA)n Simple_repeat Simple_repeat 2 40 0 306 125 0 0 chr3 123377301 123377349 -94659809 + (A)n Simple_repeat Simple_repeat 1 48 0 295 274 12 12 chr3 123377973 123378057 -94659101 + GA-rich Low_complexity Low_complexity 5 88 0 277 293 0 27 chr3 123379087 123379162 -94657996 + L2 LINE L2 3236 3308 -5 300 305 116 0 chr3 123380052 123380147 -94657011 - MIR SINE MIR -59 149 44 342 310 127 42 chr3 123381726 123381939 -94655219 - MIR SINE MIR -6 256 26 1582 126 4 42 chr3 123382329 123382590 -94654568 + AluJb SINE Alu 35 285 -27 183 100 0 0 chr3 123382644 123382674 -94654484 + (TG)n Simple_repeat Simple_repeat 1 30 0 240 35 0 0 chr3 123382905 123382934 -94654224 + (TG)n Simple_repeat Simple_repeat 2 30 0 217 132 0 0 chr3 123383234 123383272 -94653886 + (TG)n Simple_repeat Simple_repeat 1 38 0 217 132 19 19 chr3 123384605 123384658 -94652500 + (TA)n Simple_repeat Simple_repeat 1 53 0 337 306 71 15 chr3 123384933 123385089 -94652069 - MIR3 SINE MIR -43 165 2 465 309 123 0 chr3 123385188 123385350 -94651808 - MIR SINE MIR -21 241 60 438 332 31 16 chr3 123386307 123386493 -94650665 + MIR SINE MIR 3 188 -62 1016 274 30 9 chr3 123388614 123388953 -94648205 + L1ME4a LINE L1 5564 5909 -212 297 331 63 8 chr3 123389859 123389986 -94647172 + MER5B DNA MER1_type 45 178 0 1256 298 115 31 chr3 123390545 123391590 -94645568 + L2 LINE L2 2194 3313 0 301 325 0 0 chr3 123391992 123392072 -94645086 + L2 LINE L2 3233 3312 -1 208 245 57 0 chr3 123392206 123392259 -94644899 + L2 LINE L2 3186 3241 -31 2450 73 0 7 chr3 123392609 123392912 -94644246 + AluSp SINE Alu 1 301 -12 465 260 70 0 chr3 123393084 123393184 -94643974 + MER81 DNA DNA 8 114 0 24 67 0 0 chr3 123394002 123394047 -94643111 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr3 123394818 123394840 -94642318 + AT_rich Low_complexity Low_complexity 1 22 0 1328 210 4 4 chr3 123395534 123395801 -94641357 - AluJb SINE Alu -34 278 12 358 343 71 7 chr3 123396431 123396571 -94640587 + MIR SINE MIR 16 164 -98 2207 138 0 0 chr3 123399584 123399896 -94637262 - AluSx SINE Alu 0 312 1 2296 95 0 3 chr3 123401017 123401312 -94635846 - AluY SINE Alu -13 298 5 1914 159 0 0 chr3 123401833 123402129 -94635029 - AluSx SINE Alu -16 296 1 189 349 266 0 chr3 123402361 123402470 -94634688 - L2 LINE L2 -17 3255 3118 1500 197 10 17 chr3 123403014 123403309 -94633849 + AluJb SINE Alu 9 301 -11 180 317 118 37 chr3 123408026 123408187 -94628971 + L3 LINE CR1 951 1124 -453 21 0 0 0 chr3 123408922 123408943 -94628215 + AT_rich Low_complexity Low_complexity 1 21 0 859 283 225 12 chr3 123409699 123410268 -94626890 + L2 LINE L2 2625 3313 0 242 324 0 14 chr3 123410699 123410773 -94626385 + Charlie4 DNA MER1_type 1888 1960 -1 778 256 103 21 chr3 123411496 123411738 -94625420 - MIR SINE MIR 0 262 1 14148 129 15 16 chr3 123411771 123413333 -94623825 - Tigger1 DNA MER2_type -169 2249 688 2274 75 35 0 chr3 123413333 123413615 -94623543 - AluSc SINE Alu -14 295 4 14148 129 15 16 chr3 123413615 123414302 -94622856 - Tigger1 DNA MER2_type -1730 688 2 297 240 0 0 chr3 123414631 123414706 -94622452 - MER116 DNA Mariner -5 75 1 1975 169 112 68 chr3 123415056 123415540 -94621618 - MLT1D LTR MaLR 0 505 1 261 143 48 9 chr3 123416353 123416458 -94620700 + (TA)n Simple_repeat Simple_repeat 1 109 0 26 50 0 0 chr3 123416515 123416555 -94620603 + AT_rich Low_complexity Low_complexity 1 40 0 2128 106 10 7 chr3 123417023 123417316 -94619842 - AluSx SINE Alu -16 296 3 21 0 0 0 chr3 123418064 123418085 -94619073 + AT_rich Low_complexity Low_complexity 1 21 0 261 0 0 0 chr3 123418485 123418514 -94618644 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 282 29 0 0 chr3 123418513 123418548 -94618610 + (GA)n Simple_repeat Simple_repeat 2 36 0 704 314 110 11 chr3 123419365 123419722 -94617436 + LTR16A LTR ERVL 68 457 0 211 240 117 91 chr3 123421422 123421576 -94615582 - MIR3 SINE MIR -26 182 25 333 0 0 0 chr3 123421918 123421955 -94615203 + (TA)n Simple_repeat Simple_repeat 1 37 0 231 325 47 6 chr3 123422057 123422226 -94614932 - MLT1J LTR MaLR 0 511 336 308 250 92 87 chr3 123422316 123422512 -94614646 - MLT1J LTR MaLR -220 291 95 349 248 7 42 chr3 123422578 123423007 -94614151 + CT-rich Low_complexity Low_complexity 1 414 0 4583 177 23 14 chr3 123424618 123425583 -94611575 + L1M1 LINE L1 1782 2754 -4811 198 0 0 0 chr3 123426098 123426120 -94611038 + (CA)n Simple_repeat Simple_repeat 2 23 0 198 313 62 10 chr3 123426497 123426593 -94610565 + MIR SINE MIR 8 108 -154 231 103 0 0 chr3 123426978 123427017 -94610141 + (TG)n Simple_repeat Simple_repeat 2 40 0 305 342 45 9 chr3 123427480 123427591 -94609567 - MER5B DNA MER1_type 0 178 64 2448 118 8 8 chr3 123427921 123428285 -94608873 + THE1B LTR MaLR 1 364 0 1978 173 128 8 chr3 123428385 123428825 -94608333 + L1MB3 LINE L1 5689 6182 -1 668 232 88 36 chr3 123429315 123429509 -94607649 - L1ME1 LINE L1 -50 6116 5913 316 308 0 11 chr3 123429514 123429605 -94607553 + L1MC4 LINE L1 6614 6703 -1339 250 98 0 0 chr3 123429631 123429682 -94607476 + LTR66 LTR ERVL 394 444 -166 575 200 7 75 chr3 123429687 123429729 -94607429 - L1ME1 LINE L1 -280 5886 5843 1519 188 30 24 chr3 123429729 123430027 -94607131 + AluJo SINE Alu 1 300 -12 575 200 7 75 chr3 123430027 123430274 -94606884 - L1ME1 LINE L1 -323 5843 5445 2394 53 0 7 chr3 123430563 123430865 -94606293 + L1PA7 LINE L1 5853 6152 -2 581 95 12 0 chr3 123430929 123431013 -94606145 + L1PA10 LINE L1 6084 6168 0 1410 178 60 46 chr3 123431013 123431383 -94605775 + L1MA9 LINE L1 5938 6312 0 23 0 0 0 chr3 123431411 123431434 -94605724 + AT_rich Low_complexity Low_complexity 1 23 0 541 202 0 42 chr3 123431707 123431826 -94605332 + MER58 DNA MER1_type 2306 2419 -1 211 294 0 0 chr3 123431827 123431878 -94605280 - MIR SINE MIR -69 139 89 562 255 181 10 chr3 123431935 123432139 -94605019 + MIR SINE MIR 24 262 0 2280 98 3 0 chr3 123433199 123433494 -94603664 - AluSc SINE Alu -13 296 1 200 317 97 59 chr3 123433802 123433988 -94603170 + L2 LINE L2 3121 3313 0 2130 118 56 34 chr3 123435000 123435356 -94601802 - THE1B LTR MaLR 0 364 1 943 211 67 18 chr3 123435634 123435857 -94601301 - MIR SINE MIR 0 262 29 2398 88 0 0 chr3 123436222 123436519 -94600639 + AluSc SINE Alu 1 297 -12 315 154 19 0 chr3 123436753 123436805 -94600353 + MIR3 SINE MIR 124 176 -32 27 0 0 0 chr3 123437423 123437450 -94599708 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr3 123438118 123438142 -94599016 + AT_rich Low_complexity Low_complexity 1 24 0 382 117 0 0 chr3 123438651 123438711 -94598447 - AluSp SINE Alu -11 292 233 6606 32 0 4 chr3 123438711 123439533 -94597625 - L1PA4 LINE L1 0 6155 5374 1724 100 67 0 chr3 123439533 123439773 -94597385 - AluSp SINE Alu -57 256 1 1807 220 81 33 chr3 123440342 123440824 -94596334 - MLT1D LTR MaLR 0 505 1 192 77 0 0 chr3 123440961 123440987 -94596171 + (A)n Simple_repeat Simple_repeat 1 26 0 414 301 68 27 chr3 123442064 123442210 -94594948 - MIR3 SINE MIR -6 202 51 341 306 56 27 chr3 123442360 123442595 -94594563 - MIR SINE MIR -9 253 13 225 262 122 52 chr3 123442752 123442924 -94594234 - MIR SINE MIR -72 190 7 2220 114 3 13 chr3 123443460 123443775 -94593383 + AluSq SINE Alu 1 312 -1 22 80 0 0 chr3 123445999 123446049 -94591109 + AT_rich Low_complexity Low_complexity 1 50 0 642 184 0 40 chr3 123449547 123449672 -94587486 - MLT1C LTR MaLR 0 467 348 310 325 91 30 chr3 123450202 123450467 -94586691 - L2 LINE L2 -840 2474 2194 351 296 154 0 chr3 123450492 123450654 -94586504 + MIR SINE MIR 20 206 -56 265 167 42 0 chr3 123450804 123450852 -94586306 + MER112 DNA MER1_type 208 257 -3 205 178 0 0 chr3 123451862 123451907 -94585251 + A-rich Low_complexity Low_complexity 1 45 0 206 339 119 0 chr3 123452145 123452254 -94584904 + MIR3 SINE MIR 83 204 -4 23 33 0 0 chr3 123452282 123452312 -94584846 + AT_rich Low_complexity Low_complexity 1 30 0 235 330 10 48 chr3 123453111 123453214 -94583944 - L2 LINE L2 -27 3286 3188 486 0 0 0 chr3 123454287 123454341 -94582817 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 219 69 0 0 chr3 123454834 123454863 -94582295 + (T)n Simple_repeat Simple_repeat 1 29 0 26 30 0 0 chr3 123455562 123455595 -94581563 + AT_rich Low_complexity Low_complexity 1 33 0 322 265 10 20 chr3 123456591 123456693 -94580465 + CT-rich Low_complexity Low_complexity 2 102 0 21 0 0 0 chr3 123457321 123457342 -94579816 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr3 123457769 123457789 -94579369 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 25 51 0 0 chr3 123458121 123458160 -94578998 + AT_rich Low_complexity Low_complexity 1 39 0 764 236 143 35 chr3 123458184 123458583 -94578575 - L1MC5 LINE L1 -44 7917 7476 * 2739 182 50 9 chr3 123458578 123459123 -94578035 - L1MD3 LINE L1 0 7995 7429 3287 198 70 53 chr3 123459142 123460667 -94576491 - L1MB8 LINE L1 -5 6173 4616 763 201 38 68 chr3 123460671 123460935 -94576223 - L1MB8 LINE L1 -1737 4409 4154 871 252 50 43 chr3 123460997 123461299 -94575859 - L1MB8 LINE L1 -1954 4192 3889 1064 155 0 0 chr3 123461402 123461576 -94575582 + AluSg/x SINE Alu 133 306 -4 2910 73 0 3 chr3 123461576 123461959 -94575199 + L1P3 LINE L1 5359 5740 -414 596 280 84 5 chr3 123461959 123462173 -94574985 + LTR16B LTR ERVL 234 464 0 309 318 61 8 chr3 123462249 123462381 -94574777 - L1ME LINE L1 -622 5499 5361 21 71 0 0 chr3 123462409 123462451 -94574707 + AT_rich Low_complexity Low_complexity 1 42 0 225 226 0 0 chr3 123462684 123462737 -94574421 + (CATG)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr3 123464446 123464468 -94572690 + AT_rich Low_complexity Low_complexity 1 22 0 180 361 134 0 chr3 123464474 123464571 -94572587 - L2 LINE L2 -19 3253 3144 269 250 7 125 chr3 123464676 123464828 -94572330 - L2 LINE L2 -216 3056 2923 409 367 49 23 chr3 123465056 123465364 -94571794 - L2 LINE L2 -1890 1424 1109 835 301 48 27 chr3 123465437 123465729 -94571429 + LTR16C LTR ERVL 90 387 -104 * 1014 277 59 50 chr3 123465728 123466186 -94570972 - MLT1H LTR MaLR -13 536 75 382 284 10 0 chr3 123466240 123466342 -94570816 + LTR16C LTR ERVL 363 465 -26 230 0 33 0 chr3 123468868 123468898 -94568260 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 230 330 37 58 chr3 123469880 123470071 -94567087 + L2 LINE L2 3124 3310 -3 473 289 59 0 chr3 123470843 123470978 -94566180 - MIR3 SINE MIR -1 207 65 1742 126 8 76 chr3 123471502 123471871 -94565287 - MER4A LTR ERV1 0 664 261 673 92 10 10 chr3 123471871 123471969 -94565189 - MER4A LTR ERV1 -566 98 1 1265 149 110 26 chr3 123471969 123472197 -94564961 + AluJo SINE Alu 23 269 -43 1770 249 60 95 chr3 123472524 123473166 -94563992 + L1ME LINE L1 2 665 -5405 2292 99 3 0 chr3 123473166 123473470 -94563688 + AluY SINE Alu 1 305 -6 1770 249 60 95 chr3 123473470 123473711 -94563447 + L1ME LINE L1 665 843 -5227 2385 95 3 0 chr3 123473711 123474017 -94563141 + AluSc SINE Alu 1 307 -2 1770 249 60 95 chr3 123474017 123474203 -94562955 + L1ME LINE L1 843 1034 -5036 30 0 0 0 chr3 123474212 123474242 -94562916 + AT_rich Low_complexity Low_complexity 1 30 0 4633 175 37 23 chr3 123474242 123476029 -94561129 - L1MA9 LINE L1 -22 6526 4609 1953 180 77 3 chr3 123476029 123476423 -94560735 + MSTB1 LTR MaLR 4 363 -2 7601 206 59 50 chr3 123476424 123477118 -94560040 - L1MA9 LINE L1 -1765 4617 3931 2315 30 0 0 chr3 123477118 123477389 -94559769 - L1PA5 LINE L1 -11 6143 5873 7601 206 59 50 chr3 123477389 123477562 -94559596 - L1MA9 LINE L1 -2451 3931 3761 2035 151 0 0 chr3 123477562 123477854 -94559304 + AluSx SINE Alu 2 293 -19 7601 206 59 50 chr3 123477854 123479264 -94557894 - L1MA9 LINE L1 -2621 3761 2301 2178 112 3 0 chr3 123479264 123479558 -94557600 - AluSg SINE Alu -15 295 1 7601 206 59 50 chr3 123479558 123479844 -94557314 - L1MA9 LINE L1 -4081 2301 2019 15793 154 32 5 chr3 123479917 123482510 -94554648 + L1MA3 LINE L1 410 3072 -4493 12133 166 30 11 chr3 123482618 123486519 -94550639 + L1MA3 LINE L1 3753 7723 -1 2124 275 32 18 chr3 123486627 123487539 -94549619 - L1M2 LINE L1 -4161 1874 950 374 292 81 31 chr3 123487537 123487698 -94549460 - L1M2 LINE L1 -5506 449 281 * 802 279 5 9 chr3 123487707 123487926 -94549232 - L1M2 LINE L1 -5720 235 18 347 272 105 43 chr3 123487938 123488100 -94549058 + L1M4c LINE L1 1284 1455 -4929 416 311 140 25 chr3 123488181 123488416 -94548742 + MIR SINE MIR 1 262 0 292 253 44 0 chr3 123488480 123488571 -94548587 - L1MEd LINE L1 -2448 3681 3587 29 0 0 0 chr3 123488613 123488642 -94548516 + AT_rich Low_complexity Low_complexity 1 29 0 348 127 0 0 chr3 123488653 123488708 -94548450 + (TG)n Simple_repeat Simple_repeat 2 56 0 332 287 97 21 chr3 123488926 123489215 -94547943 - L1MEd LINE L1 -2880 3249 2939 3627 125 241 1 chr3 123489215 123489926 -94547232 - Tigger3(Golem) DNA MER2_type -1 3028 2148 333 256 124 68 chr3 123489941 123490296 -94546862 - L1MEd LINE L1 -4910 1209 835 263 277 82 50 chr3 123490343 123490502 -94546656 - L1MEd LINE L1 -5368 751 588 812 270 81 47 chr3 123490899 123491258 -94545900 + L2 LINE L2 2943 3313 0 232 374 60 0 chr3 123491259 123491425 -94545733 - L2 LINE L2 -15 3298 3123 240 299 47 16 chr3 123492382 123492540 -94544618 - MIR SINE MIR -2 206 38 551 289 39 43 chr3 123492804 123493012 -94544146 - L2 LINE L2 -2 3311 3105 291 357 219 25 chr3 123493414 123493652 -94543506 - L2 LINE L2 -3 3269 2986 26 50 0 0 chr3 123493715 123493755 -94543403 + AT_rich Low_complexity Low_complexity 1 40 0 25 0 0 0 chr3 123494487 123494512 -94542646 + AT_rich Low_complexity Low_complexity 1 25 0 234 0 0 0 chr3 123494845 123494871 -94542287 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 454 321 128 18 chr3 123495636 123495854 -94541304 - MIR SINE MIR -14 248 7 287 286 67 42 chr3 123496583 123496702 -94540456 + L2 LINE L2 3151 3272 0 348 214 121 7 chr3 123497027 123497167 -94539991 - L1ME4a LINE L1 -2 6119 5964 548 288 113 16 chr3 123497249 123497558 -94539600 - L1ME4a LINE L1 -263 5858 5520 728 179 45 19 chr3 123497709 123497865 -94539293 - FRAM SINE Alu -6 160 1 261 0 0 0 chr3 123498439 123498468 -94538690 + (TG)n Simple_repeat Simple_repeat 2 30 0 21 36 0 0 chr3 123500052 123500080 -94537078 + AT_rich Low_complexity Low_complexity 1 28 0 291 222 63 0 chr3 123500327 123500390 -94536768 + L2 LINE L2 3206 3272 0 214 222 74 0 chr3 123500661 123500715 -94536443 - MIR SINE MIR -111 151 94 255 340 160 0 chr3 123501649 123501755 -94535403 - L2 LINE L2 -25 3247 3125 611 309 64 0 chr3 123501760 123501948 -94535210 + MIR SINE MIR 59 258 -4 2827 190 5 19 chr3 123502195 123502785 -94534373 - L1MB3 LINE L1 0 6183 5602 293 365 26 26 chr3 123503070 123503226 -94533932 + MIR SINE MIR 57 212 -50 22 0 0 0 chr3 123503303 123503325 -94533833 + AT_rich Low_complexity Low_complexity 1 22 0 1385 154 32 139 chr3 123504155 123504558 -94532600 - MLT1B LTR MaLR -26 364 5 185 319 0 0 chr3 123504570 123504617 -94532541 - MIR SINE MIR 0 262 216 256 234 21 0 chr3 123504617 123504711 -94532447 + (TA)n Simple_repeat Simple_repeat 2 97 0 566 270 22 7 chr3 123504717 123504854 -94532304 - MIR SINE MIR -76 186 48 198 0 0 0 chr3 123504942 123504964 -94532194 + (TTG)n Simple_repeat Simple_repeat 3 24 0 2095 99 7 3 chr3 123506933 123507227 -94529931 - AluSx SINE Alu -17 295 1 400 309 34 0 chr3 123507758 123507907 -94529251 - MER117 DNA MER1_type -38 159 6 184 365 19 0 chr3 123508153 123508205 -94528953 + L2 LINE L2 3117 3169 -103 2372 70 3 0 chr3 123508229 123508544 -94528614 - L1PA5 LINE L1 0 6154 5839 332 374 32 7 chr3 123508866 123509021 -94528137 + MIR SINE MIR 1 159 -103 29 78 0 0 chr3 123509893 123509957 -94527201 + AT_rich Low_complexity Low_complexity 1 64 0 1570 142 36 29 chr3 123510581 123510856 -94526302 - AluJb SINE Alu -35 277 1 210 143 0 0 chr3 123510862 123510897 -94526261 + (T)n Simple_repeat Simple_repeat 1 35 0 1524 210 69 47 chr3 123511202 123511654 -94525504 - MLT1C LTR MaLR 0 467 6 2213 156 62 0 chr3 123511713 123512116 -94525042 + MSTC LTR MaLR 1 428 0 190 321 99 12 chr3 123512725 123512806 -94524352 - MIR SINE MIR -84 124 37 252 287 46 23 chr3 123513611 123513698 -94523460 - L2 LINE L2 -248 3065 2977 2772 13 0 0 chr3 123514765 123515076 -94522082 + AluYa5 SINE Alu 1 311 0 283 304 17 70 chr3 123515887 123516002 -94521156 - MIR3 SINE MIR -4 204 96 635 304 97 35 chr3 123516393 123516930 -94520228 - L1MC4a LINE L1 -1979 5829 5260 26 0 0 0 chr3 123517406 123517432 -94519726 + AT_rich Low_complexity Low_complexity 1 26 0 285 212 44 66 chr3 123518003 123518140 -94519018 - L1ME4a LINE L1 -4 6117 5984 763 277 73 22 chr3 123518192 123518560 -94518598 - L1ME4a LINE L1 -238 5883 5497 23 33 0 0 chr3 123519000 123519030 -94518128 + AT_rich Low_complexity Low_complexity 1 30 0 186 43 0 0 chr3 123520404 123520427 -94516731 + (T)n Simple_repeat Simple_repeat 1 23 0 1839 242 101 37 chr3 123520904 123521450 -94515708 - MLT1E2 LTR MaLR -45 581 1 2027 105 7 3 chr3 123521835 123522120 -94515038 - AluSx SINE Alu -2 310 25 1415 156 0 13 chr3 123523214 123523452 -94513706 + MER46A DNA MER2_type 1 235 -1 2036 120 5 76 chr3 123523683 123523742 -94513416 - L1PB1 LINE L1 -2 6149 6087 1457 123 0 56 chr3 123523742 123523993 -94513165 - AluSq SINE Alu -18 295 59 2036 120 5 76 chr3 123523993 123524136 -94513022 - L1PB1 LINE L1 -64 6087 5984 2035 139 0 0 chr3 123524136 123524431 -94512727 - AluSx SINE Alu -17 295 1 2036 120 5 76 chr3 123524431 123524610 -94512548 - L1PB1 LINE L1 -167 5984 5794 405 0 0 0 chr3 123524610 123524655 -94512503 + (TA)n Simple_repeat Simple_repeat 2 46 0 210 225 18 45 chr3 123524706 123524817 -94512341 + (TA)n Simple_repeat Simple_repeat 2 109 0 * 211 195 73 12 chr3 123524749 123524831 -94512327 + (TATATG)n Simple_repeat Simple_repeat 4 90 0 679 79 0 40 chr3 123524831 123524932 -94512226 - L1PB1 LINE L1 -356 5795 5699 374 313 47 56 chr3 123525306 123525520 -94511638 + MIR SINE MIR 1 212 -50 29 60 0 0 chr3 123525871 123525921 -94511237 + AT_rich Low_complexity Low_complexity 1 50 0 358 196 15 0 chr3 123526547 123526686 -94510472 + CT-rich Low_complexity Low_complexity 1 141 0 369 0 0 0 chr3 123527677 123527718 -94509440 + (CA)n Simple_repeat Simple_repeat 2 42 0 2374 189 33 7 chr3 123528551 123529006 -94508152 - MLT1C LTR MaLR 0 467 1 602 147 26 0 chr3 123530363 123530479 -94506679 - L1MA7 LINE L1 -1 6290 6172 191 337 23 23 chr3 123530569 123530655 -94506503 - MIR SINE MIR -109 153 68 2099 129 3 0 chr3 123532344 123532653 -94504505 - AluSx SINE Alu 0 312 3 691 278 0 0 chr3 123532781 123532943 -94504215 + MIR SINE MIR 101 262 0 241 235 0 0 chr3 123532986 123533037 -94504121 + L2 LINE L2 3263 3313 0 260 369 134 14 chr3 123533716 123534006 -94503152 + L2 LINE L2 2948 3272 0 21 0 0 0 chr3 123534056 123534077 -94503081 + AT_rich Low_complexity Low_complexity 1 21 0 271 324 0 0 chr3 123534392 123534460 -94502698 + L2 LINE L2 3204 3271 -1 25 0 0 0 chr3 123536374 123536399 -94500759 + AT_rich Low_complexity Low_complexity 1 25 0 24 67 0 0 chr3 123538609 123538654 -94498504 + AT_rich Low_complexity Low_complexity 1 45 0 458 325 31 12 chr3 123539076 123539236 -94497922 + MER5A DNA MER1_type 26 188 -1 27 0 0 0 chr3 123539450 123539477 -94497681 + AT_rich Low_complexity Low_complexity 1 27 0 432 294 63 0 chr3 123540322 123540448 -94496710 - L2 LINE L2 -9 3304 3171 2183 113 3 0 chr3 123540473 123540764 -94496394 + AluSx SINE Alu 1 292 -20 690 165 28 6 chr3 123540773 123540949 -94496209 + (TA)n Simple_repeat Simple_repeat 1 180 0 21 36 0 0 chr3 123540967 123540995 -94496163 + AT_rich Low_complexity Low_complexity 1 28 0 796 264 29 17 chr3 123541943 123542182 -94494976 + MIR SINE MIR 21 262 0 221 175 0 0 chr3 123542190 123542230 -94494928 + (TTA)n Simple_repeat Simple_repeat 1 40 0 202 321 250 0 chr3 123542829 123542969 -94494189 + MIR SINE MIR 76 250 -12 392 315 146 3 chr3 123544323 123544500 -94492658 - MIR SINE MIR -43 219 9 468 0 0 0 chr3 123544585 123544637 -94492521 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 1899 147 7 3 chr3 123544637 123544936 -94492222 - AluSg SINE Alu -10 300 1 795 75 6 56 chr3 123545768 123545928 -94491230 + (GAAA)n Simple_repeat Simple_repeat 4 155 0 2665 26 7 3 chr3 123546261 123546571 -94490587 - AluY SINE Alu 0 311 1 2092 128 10 3 chr3 123546627 123546924 -94490234 - AluSx SINE Alu -13 299 1 192 125 0 0 chr3 123548392 123548424 -94488734 + (TTA)n Simple_repeat Simple_repeat 1 32 0 182 310 28 90 chr3 123550177 123550322 -94486836 + MIR SINE MIR 40 175 -87 610 219 116 0 chr3 123550474 123550620 -94486538 - MER5A DNA MER1_type -26 163 1 679 277 0 28 chr3 123551318 123551495 -94485663 - MER5B DNA MER1_type -6 172 1 * 806 314 18 4 chr3 123551495 123551719 -94485439 + MIR SINE MIR 9 235 -27 197 103 0 103 chr3 123551756 123551795 -94485363 + MIR SINE MIR 115 149 -59 2073 100 19 29 chr3 123552304 123552614 -94484544 - AluSg1 SINE Alu -2 307 1 222 283 71 40 chr3 123554390 123554489 -94482669 + MIR SINE MIR 34 135 -127 340 250 95 26 chr3 123554938 123555054 -94482104 - MER5A DNA MER1_type -2 187 64 551 105 0 0 chr3 123555138 123555214 -94481944 + AluJ/FLAM SINE Alu 1 76 -236 23 33 0 0 chr3 123555853 123555883 -94481275 + AT_rich Low_complexity Low_complexity 1 30 0 536 281 32 54 chr3 123557886 123558107 -94479051 - MIR SINE MIR 0 262 47 2999 132 35 92 chr3 123559154 123559751 -94477407 + MER6A DNA MER2_type 43 605 0 24 32 0 0 chr3 123559924 123559955 -94477203 + AT_rich Low_complexity Low_complexity 1 31 0 189 94 0 0 chr3 123560007 123560039 -94477119 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 226 149 64 0 chr3 123560479 123560526 -94476632 + L1MA9 LINE L1 6231 6280 -32 726 315 60 13 chr3 123562552 123562866 -94474292 + L3 LINE CR1 519 847 -730 525 333 67 16 chr3 123562932 123563187 -94473971 + L3 LINE CR1 1121 1388 -189 227 331 72 14 chr3 123563234 123563373 -94473785 + MIR SINE MIR 35 181 -81 1517 182 55 34 chr3 123563406 123563786 -94473372 - MLT1B LTR MaLR -2 388 1 184 331 63 63 chr3 123563808 123563884 -94473274 + L3 LINE CR1 1434 1512 -65 691 108 158 0 chr3 123563884 123563977 -94473181 - MER85 DNA T2_type 0 139 22 213 39 0 0 chr3 123563977 123564003 -94473155 + (CA)n Simple_repeat Simple_repeat 1 26 0 691 108 158 0 chr3 123564003 123564029 -94473129 - MER85 DNA T2_type -117 22 1 184 331 63 63 chr3 123564029 123564094 -94473064 + L3 LINE CR1 1511 1575 -2 1561 172 46 33 chr3 123564110 123564412 -94472746 + AluJo SINE Alu 1 306 -6 1119 128 0 11 chr3 123565117 123565297 -94471861 - L1PA10 LINE L1 -2 6166 5989 639 67 0 0 chr3 123565297 123565387 -94471771 + L1P LINE L1 5331 5420 -741 207 232 0 18 chr3 123566315 123566371 -94470787 + (TTA)n Simple_repeat Simple_repeat 3 57 0 2335 101 0 0 chr3 123567268 123567576 -94469582 - AluY SINE Alu -3 308 1 1019 147 79 11 chr3 123567596 123567773 -94469385 + MER5A DNA MER1_type 1 189 0 407 252 141 15 chr3 123569137 123569272 -94467886 + MER5A DNA MER1_type 7 158 -31 42 36 0 0 chr3 123569273 123569329 -94467829 + AT_rich Low_complexity Low_complexity 1 56 0 358 280 179 34 chr3 123569498 123569705 -94467453 - MIR SINE MIR -13 249 13 206 246 0 101 chr3 123569780 123569849 -94467309 + L3b LINE CR1 1520 1581 -2 2332 73 6 16 chr3 123570036 123570349 -94466809 + AluY SINE Alu 1 310 -1 447 292 11 28 chr3 123570506 123570684 -94466474 - MER5B DNA MER1_type -3 175 1 233 283 30 40 chr3 123571958 123572057 -94465101 - MIR SINE MIR -145 117 20 255 345 36 9 chr3 123572115 123572225 -94464933 - L2 LINE L2 -1 3312 3200 947 239 88 0 chr3 123572497 123572735 -94464423 + MIR SINE MIR 1 259 -3 227 105 70 0 chr3 123574087 123574144 -94463014 + (TA)n Simple_repeat Simple_repeat 2 62 0 655 338 112 12 chr3 123576274 123576597 -94460561 - L2 LINE L2 -1247 2067 1713 197 260 247 41 chr3 123576773 123576919 -94460239 + MIR3 SINE MIR 30 205 -3 356 362 14 0 chr3 123577016 123577175 -94459983 - MIR SINE MIR -67 141 32 252 0 0 0 chr3 123577225 123577253 -94459905 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 284 220 22 0 chr3 123579791 123579882 -94457276 - L1M4c LINE L1 -2959 3685 3593 2080 263 65 69 chr3 123579929 123581463 -94455695 - L1M4c LINE L1 -4537 2107 532 4145 103 236 137 chr3 123583008 123584366 -94452792 - pTR5 LTR ERV1 0 2438 743 1899 174 0 0 chr3 123584617 123584921 -94452237 + AluJb SINE Alu 1 304 -8 203 133 44 0 chr3 123584936 123584981 -94452177 + (TATAA)n Simple_repeat Simple_repeat 3 49 0 31 26 0 0 chr3 123585363 123585401 -94451757 + AT_rich Low_complexity Low_complexity 1 38 0 194 179 18 0 chr3 123585415 123585471 -94451687 + (TA)n Simple_repeat Simple_repeat 2 58 0 330 319 199 7 chr3 123585919 123586060 -94451098 + MER91A DNA MER1_type 19 186 -10 459 0 0 0 chr3 123588341 123588392 -94448766 + (CA)n Simple_repeat Simple_repeat 2 52 0 2184 96 4 0 chr3 123588401 123588722 -94448436 + AluSp SINE Alu 5 326 0 290 301 66 15 chr3 123588799 123588935 -94448223 + L2 LINE L2 3162 3304 -9 254 231 0 46 chr3 123589626 123589691 -94447467 + L2 LINE L2 3248 3309 -4 428 335 94 46 chr3 123589755 123590128 -94447030 + L1ME4a LINE L1 3911 4301 -1845 295 222 28 14 chr3 123590159 123590231 -94446927 + Tigger5 DNA MER2_type 2251 2323 0 355 282 127 28 chr3 123590355 123590674 -94446484 + L1ME4a LINE L1 4482 4835 -1311 530 292 80 38 chr3 123591205 123591732 -94445426 + L1ME4a LINE L1 5573 6121 0 266 290 0 0 chr3 123593877 123593939 -94443219 + L2 LINE L2 3203 3264 -8 302 355 16 8 chr3 123597000 123597121 -94440037 + MIR3 SINE MIR 87 208 0 251 330 9 9 chr3 123597586 123597692 -94439466 - MIR SINE MIR -7 255 150 212 363 80 0 chr3 123598095 123598208 -94438950 + MIR3 SINE MIR 59 180 -28 563 271 84 10 chr3 123599882 123600085 -94437073 - HsTC2 DNA Tc2 -1086 812 595 270 307 80 49 chr3 123600812 123600975 -94436183 - MIR3 SINE MIR -25 183 16 789 229 49 40 chr3 123601697 123601920 -94435238 - MIR SINE MIR -19 243 19 304 318 219 4 chr3 123602008 123602282 -94434876 - L3 LINE CR1 -62 1515 1183 717 242 16 32 chr3 123602414 123602604 -94434554 + MIR SINE MIR 6 192 -70 210 313 134 62 chr3 123602872 123603051 -94434107 + MIR3 SINE MIR 12 203 -5 1527 201 13 19 chr3 123604668 123604976 -94432182 - AluJo SINE Alu -6 306 1 376 278 40 40 chr3 123604982 123605133 -94432025 - MIR SINE MIR -92 170 20 991 327 117 44 chr3 123607681 123608481 -94428677 + L2 LINE L2 2366 3234 -79 1019 273 103 45 chr3 123608481 123608993 -94428165 - MLT1F LTR MaLR 0 542 1 991 327 117 44 chr3 123608993 123609047 -94428111 + L2 LINE L2 3234 3283 -30 236 209 0 0 chr3 123609217 123609260 -94427898 + MIR SINE MIR 117 159 -103 1475 197 0 25 chr3 123610272 123610653 -94426505 + AluJb SINE Alu 10 383 0 1202 213 86 61 chr3 123610709 123611165 -94425993 + MLT1C LTR MaLR 1 467 0 341 288 98 8 chr3 123611230 123611362 -94425796 + MIR SINE MIR 36 179 -83 29 47 0 0 chr3 123612075 123612118 -94425040 + AT_rich Low_complexity Low_complexity 1 43 0 650 343 89 43 chr3 123612156 123612596 -94424562 - L2 LINE L2 0 3272 2813 531 315 146 19 chr3 123612588 123613102 -94424056 - L2 LINE L2 -655 2659 2081 * 22 0 0 0 chr3 123613425 123613447 -94423711 + AT_rich Low_complexity Low_complexity 1 22 0 493 338 36 36 chr3 123613606 123613828 -94423330 - L2 LINE L2 -62 3210 2989 1615 135 86 50 chr3 123614010 123614372 -94422786 + THE1C LTR MaLR 1 375 0 332 267 60 17 chr3 123614528 123614644 -94422514 - MIR SINE MIR -111 151 31 694 182 0 0 chr3 123614688 123614809 -94422349 - AluJb SINE Alu -191 121 1 2136 97 0 33 chr3 123614828 123615127 -94422031 - AluSx SINE Alu -23 289 1 1072 235 9 51 chr3 123615135 123615450 -94421708 + L1ME1 LINE L1 5674 5975 -191 378 0 0 0 chr3 123615471 123615513 -94421645 + (TA)n Simple_repeat Simple_repeat 2 43 0 1274 124 0 0 chr3 123615513 123615691 -94421467 + FRAM SINE Alu 1 176 0 1490 197 32 50 chr3 123615694 123616241 -94420917 - L1ME LINE L1 -505 5661 5119 289 315 22 0 chr3 123616294 123616383 -94420775 + L2 LINE L2 3222 3312 -1 297 346 115 6 chr3 123618263 123618419 -94418739 + MARNA DNA Mariner 7 179 -407 2358 92 0 0 chr3 123621039 123621342 -94415816 - AluSx SINE Alu -9 303 1 842 209 25 96 chr3 123621596 123621835 -94415323 - MIR SINE MIR -38 224 3 244 248 87 55 chr3 123622728 123622982 -94414176 - L1ME LINE L1 -2911 3235 2974 2031 112 0 7 chr3 123623384 123623708 -94413450 - AluSx SINE Alu 0 322 1 370 340 10 47 chr3 123625190 123625419 -94411739 + MIR SINE MIR 28 247 -15 281 290 152 22 chr3 123625696 123625834 -94411324 + MIR SINE MIR 4 159 -103 505 282 14 30 chr3 123627132 123627310 -94409848 + MIR3 SINE MIR 4 181 -27 262 252 139 43 chr3 123627336 123627451 -94409707 - MIR SINE MIR 0 262 137 309 314 48 8 chr3 123628544 123628668 -94408490 + L3b LINE CR1 1310 1438 -145 264 100 0 0 chr3 123629656 123629696 -94407462 + (TG)n Simple_repeat Simple_repeat 1 40 0 23 0 0 0 chr3 123630221 123630244 -94406914 + AT_rich Low_complexity Low_complexity 1 23 0 995 132 6 0 chr3 123630328 123630502 -94406656 + (TTCC)n Simple_repeat Simple_repeat 4 178 0 306 233 0 0 chr3 123630508 123630594 -94406564 + CT-rich Low_complexity Low_complexity 2 87 0 189 0 0 0 chr3 123630714 123630735 -94406423 + (T)n Simple_repeat Simple_repeat 1 21 0 2251 79 3 3 chr3 123631171 123631463 -94405695 + AluSc SINE Alu 1 292 -17 1005 305 112 5 chr3 123632172 123632556 -94404602 + L2 LINE L2 2887 3311 -2 368 20 20 0 chr3 123632815 123632864 -94404294 + (CA)n Simple_repeat Simple_repeat 2 51 0 194 321 104 37 chr3 123633321 123633455 -94403703 - MIR SINE MIR -46 216 74 249 267 0 0 chr3 123633668 123633728 -94403430 - MIR SINE MIR 0 262 203 334 292 25 17 chr3 123633740 123633860 -94403298 + L2 LINE L2 3193 3313 0 353 236 0 0 chr3 123634044 123634116 -94403042 - L2 LINE L2 -1 3312 3241 520 276 90 0 chr3 123636993 123637138 -94400020 - MIR SINE MIR -102 160 3 459 318 16 0 chr3 123637156 123637285 -94399873 + MIR SINE MIR 6 136 -126 791 297 59 8 chr3 123637288 123637527 -94399631 - MIR SINE MIR 0 262 12 1624 212 48 84 chr3 123637609 123638133 -94399025 + MLT2B1 LTR ERVL 1 505 -15 1746 143 4 0 chr3 123638610 123638875 -94398283 - AluSx SINE Alu -43 269 4 22 0 0 0 chr3 123639601 123639623 -94397535 + AT_rich Low_complexity Low_complexity 1 22 0 198 292 83 0 chr3 123642770 123642842 -94394316 - MIR SINE MIR -85 123 46 209 296 143 20 chr3 123643854 123643952 -94393206 - MIR SINE MIR -132 130 21 230 221 15 59 chr3 123644145 123644213 -94392945 - MIR3 SINE MIR -30 178 114 339 207 18 126 chr3 123644321 123644432 -94392726 + L2 LINE L2 3198 3296 -17 186 43 0 0 chr3 123646383 123646406 -94390752 + (TAA)n Simple_repeat Simple_repeat 2 24 0 309 247 0 72 chr3 123646841 123646938 -94390220 + MIR SINE MIR 77 166 -96 1555 179 7 29 chr3 123647101 123647279 -94389879 + AluJo SINE Alu 7 177 -135 1438 77 48 5 chr3 123647279 123647488 -94389670 - L1PB1 LINE L1 -1 6150 5933 1555 179 7 29 chr3 123647488 123647616 -94389542 + AluJo SINE Alu 177 306 -6 274 260 49 49 chr3 123648359 123648482 -94388676 - L2 LINE L2 0 3313 3191 21 36 0 0 chr3 123648825 123648853 -94388305 + AT_rich Low_complexity Low_complexity 1 28 0 297 135 19 0 chr3 123649399 123649451 -94387707 - Alu SINE Alu -249 53 1 2582 72 3 41 chr3 123649452 123649546 -94387612 - L1P LINE L1 -780 5366 5270 2068 86 0 64 chr3 123649546 123649872 -94387286 + AluY SINE Alu 1 305 -6 2582 72 3 41 chr3 123649872 123650165 -94386993 - L1P LINE L1 -876 5270 4994 3218 49 2 2 chr3 123650165 123650563 -94386595 + L1PA7 LINE L1 5744 6151 -3 437 82 0 0 chr3 123650577 123650638 -94386520 - MER2 DNA MER2_type -84 261 201 789 326 0 5 chr3 123650641 123650859 -94386299 - LTR16B LTR ERVL -213 251 35 401 250 12 76 chr3 123650908 123651080 -94386078 + L1ME LINE L1 5629 5789 -332 669 223 6 19 chr3 123651451 123651608 -94385550 + FRAM SINE Alu 2 156 -20 204 259 45 107 chr3 123651817 123651929 -94385229 - L2 LINE L2 0 3272 3168 23 54 0 0 chr3 123652742 123652779 -94384379 + AT_rich Low_complexity Low_complexity 1 37 0 193 346 59 59 chr3 123652991 123653092 -94384066 - MIR SINE MIR -71 191 91 735 288 69 46 chr3 123655077 123655845 -94381313 + L1ME3A LINE L1 810 1595 -4801 5407 166 28 10 chr3 123655845 123656848 -94380310 + L1MA7 LINE L1 5271 6291 0 352 318 47 17 chr3 123656877 123657113 -94380045 + L1ME3A LINE L1 1578 1820 -4576 1428 277 76 32 chr3 123657252 123658130 -94379028 + L1ME3A LINE L1 2060 2941 -3274 563 260 40 55 chr3 123658121 123658448 -94378710 + L1ME3A LINE L1 3238 3559 -2656 * 4865 174 15 4 chr3 123658466 123659541 -94377617 + L1PB4 LINE L1 5068 6155 -1 2480 270 74 57 chr3 123659548 123660367 -94376791 + L1ME3A LINE L1 3564 4367 -1866 207 0 0 0 chr3 123660367 123660390 -94376768 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 2480 270 74 57 chr3 123660390 123661216 -94375942 + L1ME3A LINE L1 4367 5257 -976 2215 112 3 0 chr3 123661216 123661512 -94375646 + AluSx SINE Alu 1 297 -15 2480 270 74 57 chr3 123661512 123661866 -94375292 + L1ME3A LINE L1 5257 5603 -630 1095 115 32 202 chr3 123661866 123662283 -94374875 - Tigger7 DNA MER2_type 0 2587 7 1794 221 57 49 chr3 123662298 123662890 -94374268 + L1ME3A LINE L1 5605 6201 -38 1741 278 103 29 chr3 123663296 123663861 -94373297 + L1MDb LINE L1 789 1311 -5095 1205 231 117 19 chr3 123663861 123664220 -94372938 + MSTD LTR MaLR 1 394 -2 1741 278 103 29 chr3 123664220 123665527 -94371631 + L1MDb LINE L1 1311 2830 -3576 192 77 0 0 chr3 123666207 123666233 -94370925 + (CA)n Simple_repeat Simple_repeat 2 27 0 261 279 96 10 chr3 123668954 123669058 -94368100 - MER112 DNA MER1_type 0 260 148 256 254 0 0 chr3 123669058 123669113 -94368045 + (ATAGG)n Simple_repeat Simple_repeat 5 59 0 276 283 118 24 chr3 123669275 123669458 -94367700 - MER20 DNA MER1_type 0 219 18 2101 127 3 13 chr3 123670296 123670610 -94366548 + AluSx SINE Alu 1 311 -1 383 137 14 0 chr3 123671494 123671567 -94365591 + (CA)n Simple_repeat Simple_repeat 2 75 0 192 341 0 37 chr3 123671965 123672047 -94365111 + L3 LINE CR1 421 499 -1078 254 185 65 5 chr3 123672226 123672310 -94364848 - MIR SINE MIR -33 175 86 350 291 12 30 chr3 123672636 123672801 -94364357 - L2 LINE L2 -1208 2106 1945 230 270 260 0 chr3 123675823 123675923 -94361235 - L2 LINE L2 -8 3305 3180 2064 137 0 10 chr3 123675946 123676260 -94360898 + AluSx SINE Alu 1 311 -1 2110 152 93 1 chr3 123677023 123677498 -94359660 - L1MA8 LINE L1 0 6291 5745 1571 99 6 0 chr3 123677499 123677798 -94359360 - L1MA8 LINE L1 -743 5403 5175 462 281 62 52 chr3 123678246 123678456 -94358702 - MIR SINE MIR -3 259 48 30 69 0 0 chr3 123678620 123678678 -94358480 + AT_rich Low_complexity Low_complexity 1 58 0 2285 98 0 0 chr3 123679488 123679784 -94357374 + AluSx SINE Alu 1 296 -16 33 66 0 0 chr3 123680082 123680143 -94357015 + AT_rich Low_complexity Low_complexity 1 61 0 256 313 94 10 chr3 123680615 123680711 -94356447 + MIR SINE MIR 100 203 -59 187 360 48 0 chr3 123680752 123680877 -94356281 + L2 LINE L2 1527 1657 -1657 546 277 38 17 chr3 123681145 123681403 -94355755 - L1ME4a LINE L1 -222 5899 5634 325 255 75 43 chr3 123681586 123681747 -94355411 + L2 LINE L2 2144 2309 -1005 22 0 0 0 chr3 123682042 123682064 -94355094 + AT_rich Low_complexity Low_complexity 1 22 0 915 183 139 8 chr3 123682122 123682374 -94354784 - L1MA8 LINE L1 -10 6281 5997 1049 177 71 23 chr3 123682506 123682772 -94354386 + MER33 DNA MER1_type 37 315 -9 23 33 0 0 chr3 123682821 123682851 -94354307 + AT_rich Low_complexity Low_complexity 1 30 0 313 314 97 26 chr3 123682936 123683162 -94353996 + L1ME4a LINE L1 3895 4136 -2010 231 36 0 0 chr3 123683261 123683289 -94353869 + (CA)n Simple_repeat Simple_repeat 2 29 0 433 274 69 77 chr3 123683300 123684205 -94352953 + L1ME4a LINE L1 4353 5251 -895 296 324 14 14 chr3 123684193 123684332 -94352826 + L1ME4a LINE L1 5788 5926 -195 * 477 363 37 58 chr3 123684359 123684736 -94352422 + L2 LINE L2 2896 3264 -8 2585 242 54 30 chr3 123686740 123687686 -94349472 + L1 LINE L1 2640 3608 -2538 1706 60 38 17 chr3 123687660 123687895 -94349263 + L1M1 LINE L1 5584 5823 -479 * 3751 81 4 8 chr3 123688106 123688627 -94348531 + L1PA13 LINE L1 5644 6162 -1 302 324 68 45 chr3 123689169 123689345 -94347813 + L2 LINE L2 3092 3271 -1 247 282 27 73 chr3 123690551 123690661 -94346497 + L2 LINE L2 3204 3308 -5 259 250 200 0 chr3 123690671 123690791 -94346367 - MARNA DNA Mariner -50 536 393 522 259 109 50 chr3 123691033 123691253 -94345905 + MARNA DNA Mariner 294 526 -60 42 57 0 0 chr3 123691313 123691383 -94345775 + AT_rich Low_complexity Low_complexity 1 70 0 29 0 0 0 chr3 123691682 123691711 -94345447 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr3 123691994 123692019 -94345139 + AT_rich Low_complexity Low_complexity 1 25 0 363 305 65 13 chr3 123695693 123695847 -94341311 + L2 LINE L2 3147 3308 -5 4210 139 6 3 chr3 123696063 123696740 -94340418 - L1PA10 LINE L1 -1535 4611 3933 6502 87 9 2 chr3 123696740 123698259 -94338899 + L1PA10 LINE L1 4639 6168 0 451 327 20 7 chr3 123699467 123699617 -94337541 + L2 LINE L2 3161 3312 -1 2323 68 7 0 chr3 123701117 123701410 -94335748 + AluY SINE Alu 1 295 -16 204 111 0 0 chr3 123703233 123703269 -94333889 + (CA)n Simple_repeat Simple_repeat 1 36 0 273 317 94 70 chr3 123705826 123706154 -94331004 + L3 LINE CR1 903 1238 -339 568 269 41 12 chr3 123706176 123706347 -94330811 + L2 LINE L2 3138 3313 0 374 281 71 54 chr3 123706501 123706725 -94330433 - L2 LINE L2 -115 3198 2971 2186 101 3 3 chr3 123706727 123707025 -94330133 + AluSq SINE Alu 1 298 -15 181 354 21 76 chr3 123707516 123707660 -94329498 + L2 LINE L2 3126 3261 -11 366 362 73 40 chr3 123707891 123708197 -94328961 + L1ME4a LINE L1 4865 5194 -952 1451 139 0 5 chr3 123708197 123708413 -94328745 + AluJb SINE Alu 87 301 -11 366 362 73 40 chr3 123708413 123708584 -94328574 + L1ME4a LINE L1 5194 5358 -788 62 52 0 0 chr3 123708614 123708711 -94328447 + AT_rich Low_complexity Low_complexity 1 97 0 302 226 108 137 chr3 123708717 123709051 -94328107 + L1ME4a LINE L1 5650 5967 -154 207 69 0 0 chr3 123709051 123709080 -94328078 + (TG)n Simple_repeat Simple_repeat 1 29 0 302 226 108 137 chr3 123709080 123709228 -94327930 + L1ME4a LINE L1 5967 6118 -3 22 0 0 0 chr3 123709265 123709287 -94327871 + AT_rich Low_complexity Low_complexity 1 22 0 204 316 0 13 chr3 123709370 123709449 -94327709 + GA-rich Low_complexity Low_complexity 3 80 0 21 0 0 0 chr3 123711085 123711106 -94326052 + AT_rich Low_complexity Low_complexity 1 21 0 903 274 16 8 chr3 123711949 123712201 -94324957 - MIR SINE MIR -1 261 8 207 319 11 33 chr3 123712764 123712855 -94324303 - L3 LINE CR1 -1158 419 331 26 0 0 0 chr3 123712895 123712921 -94324237 + AT_rich Low_complexity Low_complexity 1 26 0 626 98 0 11 chr3 123713066 123713158 -94324000 - L1PA5 LINE L1 -23 6131 6041 183 264 38 0 chr3 123713546 123713599 -94323559 - L2 LINE L2 0 3313 3259 750 93 0 0 chr3 123714645 123714753 -94322405 - L1PA3 LINE L1 -6 6149 6042 605 270 161 36 chr3 123715253 123715645 -94321513 + L2 LINE L2 2873 3313 0 942 206 16 22 chr3 123716212 123716396 -94320762 - MER58A DNA MER1_type -14 210 28 7391 35 0 0 chr3 123718480 123719467 -94317691 - L1PA5 LINE L1 0 6154 5172 184 237 85 136 chr3 123719847 123719965 -94317193 + L2 LINE L2 3190 3301 -12 4666 111 58 20 chr3 123719976 123720618 -94316540 - L1MA3 LINE L1 0 6305 5624 225 0 0 0 chr3 123720618 123720643 -94316515 + (CA)n Simple_repeat Simple_repeat 2 26 0 4666 111 58 20 chr3 123720643 123720813 -94316345 - L1MA3 LINE L1 -681 5624 5462 12929 166 26 14 chr3 123720826 123724393 -94312765 - L1 LINE L1 -2458 5107 1492 1735 175 89 24 chr3 123724603 123724975 -94312183 - MSTD LTR MaLR 0 396 1 381 314 194 9 chr3 123725349 123725747 -94311411 + L1MC/D LINE L1 5180 5661 -748 205 315 63 42 chr3 123725885 123726028 -94311130 + MIR3 SINE MIR 46 191 -17 707 331 94 56 chr3 123726205 123727060 -94310098 - L2 LINE L2 -832 2482 1596 236 329 143 14 chr3 123727762 123727902 -94309256 + L3 LINE CR1 1400 1557 -20 189 0 0 0 chr3 123728070 123728091 -94309067 + (TA)n Simple_repeat Simple_repeat 1 21 0 300 232 179 21 chr3 123728160 123728255 -94308903 - L2 LINE L2 -1 3312 3203 195 42 0 0 chr3 123728288 123728312 -94308846 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 380 328 196 26 chr3 123728561 123728872 -94308286 - L2 LINE L2 -408 2906 2543 237 307 136 34 chr3 123728870 123729046 -94308112 + MIR SINE MIR 66 259 -3 * 208 250 13 13 chr3 123729213 123729289 -94307869 + (CATATA)n Simple_repeat Simple_repeat 3 78 0 231 88 0 0 chr3 123729524 123729558 -94307600 + (CA)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr3 123730561 123730583 -94306575 + AT_rich Low_complexity Low_complexity 1 22 0 221 0 0 33 chr3 123730854 123730884 -94306274 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 562 252 17 0 chr3 123730888 123731003 -94306155 - FLAM_A SINE Alu -16 117 1 4621 203 83 4 chr3 123731069 123731103 -94306055 - L1MC2 LINE L1 -13 6314 6284 202 29 57 0 chr3 123731103 123731138 -94306020 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 4621 203 83 4 chr3 123731138 123732980 -94304178 - L1MC2 LINE L1 -43 6284 4294 22 0 0 0 chr3 123734128 123734150 -94303008 + AT_rich Low_complexity Low_complexity 1 22 0 26 53 4 0 chr3 123734187 123734274 -94302884 + AT_rich Low_complexity Low_complexity 1 54 0 180 200 0 0 chr3 123735173 123735218 -94301940 + CT-rich Low_complexity Low_complexity 4 48 0 506 103 39 65 chr3 123735243 123735398 -94301760 + CT-rich Low_complexity Low_complexity 2 152 0 437 358 108 28 chr3 123735411 123736170 -94300988 + L2 LINE L2 1985 2804 -510 757 233 99 48 chr3 123736171 123736484 -94300674 + L1MD2 LINE L1 6024 6352 -7 399 133 40 0 chr3 123736476 123736551 -94300607 + L1MA9 LINE L1 6192 6269 -43 * 512 175 95 29 chr3 123737155 123737292 -94299866 - L1MB7 LINE L1 -33 6151 6006 232 333 20 0 chr3 123737340 123737442 -94299716 - L3 LINE CR1 -294 1283 1180 2463 58 0 0 chr3 123737462 123737771 -94299387 - L1PA7 LINE L1 -556 5598 5290 4348 58 0 28 chr3 123737771 123738342 -94298816 + L1PA7 LINE L1 5597 6152 -2 2316 234 29 13 chr3 123739559 123740110 -94297048 + MER119 DNA MER1_type 1 560 -23 1297 244 68 75 chr3 123740185 123741191 -94295967 - L1MC2 LINE L1 -2579 3550 2552 614 343 107 7 chr3 123741196 123741496 -94295662 + L2 LINE L2 2983 3312 -1 531 322 117 75 chr3 123741555 123742061 -94295097 - L1MC2 LINE L1 -5463 656 130 23028 44 2 1 chr3 123742547 123745439 -94291719 + L1P LINE L1 2248 5141 -1005 4468 202 48 20 chr3 123745539 123746678 -94290480 + L1MB3 LINE L1 4306 5513 -670 243 0 0 0 chr3 123746678 123746705 -94290453 + (CA)n Simple_repeat Simple_repeat 2 28 0 4468 202 48 20 chr3 123746705 123747394 -94289764 + L1MB3 LINE L1 5513 6181 -2 1121 81 0 0 chr3 123747426 123747574 -94289584 - AluSc SINE Alu -4 305 158 2190 70 0 0 chr3 123747574 123747846 -94289312 - AluSc SINE Alu -37 272 1 21 0 0 0 chr3 123748187 123748208 -94288950 + AT_rich Low_complexity Low_complexity 1 21 0 1919 114 7 4 chr3 123748436 123748707 -94288451 - AluSx SINE Alu -30 282 11 22 0 0 0 chr3 123749001 123749023 -94288135 + AT_rich Low_complexity Low_complexity 1 22 0 31 0 0 0 chr3 123749879 123749910 -94287248 + AT_rich Low_complexity Low_complexity 1 31 0 706 293 142 41 chr3 123750180 123750672 -94286486 + L3 LINE CR1 930 1471 -106 1432 144 26 92 chr3 123750899 123751245 -94285913 + L1MA7 LINE L1 5967 6289 -2 746 342 71 47 chr3 123751332 123751885 -94285273 - L2 LINE L2 -2 3270 2699 229 366 93 37 chr3 123752418 123752563 -94284595 - MIR3 SINE MIR -65 143 2 1969 107 0 40 chr3 123754410 123754781 -94282377 + AluSq SINE Alu 1 359 0 2649 139 19 2 chr3 123754929 123755345 -94281813 + MSTB LTR MaLR 4 426 0 183 42 0 0 chr3 123755441 123755465 -94281693 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 381 279 39 10 chr3 123755720 123755824 -94281334 + MER5B DNA MER1_type 1 107 -71 446 293 57 0 chr3 123755888 123756028 -94281130 + MIR SINE MIR 96 243 -19 201 263 0 0 chr3 123756400 123756457 -94280701 + (TA)n Simple_repeat Simple_repeat 2 58 0 21 71 0 0 chr3 123756564 123756606 -94280552 + AT_rich Low_complexity Low_complexity 1 42 0 2454 42 0 16 chr3 123759072 123759378 -94277780 + AluY SINE Alu 1 301 -10 332 311 70 123 chr3 123760042 123760496 -94276662 + L2 LINE L2 2824 3253 -19 1477 161 181 3 chr3 123760514 123760818 -94276340 - MER46B DNA MER2_type 0 236 4 23 0 0 0 chr3 123761404 123761427 -94275731 + AT_rich Low_complexity Low_complexity 1 23 0 31 26 0 0 chr3 123761659 123761697 -94275461 + AT_rich Low_complexity Low_complexity 1 38 0 215 397 53 23 chr3 123762303 123762434 -94274724 - L2 LINE L2 -22 3250 3116 1687 161 161 13 chr3 123762866 123763239 -94273919 - MSTA LTR MaLR 0 428 1 1920 148 0 0 chr3 123763315 123763605 -94273553 + AluSg SINE Alu 6 295 -15 21 71 0 0 chr3 123764023 123764065 -94273093 + AT_rich Low_complexity Low_complexity 1 42 0 186 43 0 0 chr3 123764433 123764456 -94272702 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 260 402 8 8 chr3 123765533 123765650 -94271508 - MIR SINE MIR -55 153 37 342 0 0 0 chr3 123766322 123766360 -94270798 + (TC)n Simple_repeat Simple_repeat 1 38 0 1344 220 163 0 chr3 123766366 123766679 -94270479 + MLT1F1 LTR MaLR 203 566 -1 263 256 120 45 chr3 123766710 123766843 -94270315 + MIR SINE MIR 120 262 0 367 286 120 26 chr3 123766946 123767254 -94269904 + L1ME LINE L1 4973 5309 -837 285 283 204 31 chr3 123767299 123767614 -94269544 + L1ME LINE L1 5317 5686 -435 3635 268 79 42 chr3 123768320 123768967 -94268191 - L1MEc LINE L1 -4142 2254 1633 2688 82 22 3 chr3 123768967 123769335 -94267823 - THE1C LTR MaLR 0 375 1 3635 268 79 42 chr3 123769335 123769581 -94267577 - L1MEc LINE L1 -4763 1633 1398 1931 129 4 0 chr3 123769581 123769859 -94267299 + AluSx SINE Alu 1 279 -33 3635 268 79 42 chr3 123769859 123770924 -94266234 - L1MEc LINE L1 -4998 1398 222 190 298 39 58 chr3 123771093 123771197 -94265961 - L3 LINE CR1 -861 716 615 286 304 113 24 chr3 123771298 123771466 -94265692 + MIR SINE MIR 18 200 -62 217 343 57 0 chr3 123771495 123771600 -94265558 + L2 LINE L2 2957 3067 -205 540 290 164 13 chr3 123771867 123772105 -94265053 - L3 LINE CR1 -1117 460 187 287 321 119 6 chr3 123772194 123772362 -94264796 + MIR SINE MIR 21 207 -55 227 343 14 55 chr3 123772410 123772556 -94264602 + MIR SINE MIR 123 262 0 322 133 0 133 chr3 123774370 123774460 -94262698 - MLT1A2 LTR MaLR -11 363 286 498 181 0 0 chr3 123774560 123774643 -94262515 - MLT1A2 LTR MaLR -291 83 1 372 22 0 0 chr3 123774695 123774740 -94262418 + (CA)n Simple_repeat Simple_repeat 2 46 0 421 194 74 0 chr3 123774822 123774930 -94262228 - HAL1 LINE L1 -149 2358 2243 2086 264 107 36 chr3 123775119 123775483 -94261675 - HAL1 LINE L1 -564 1943 1606 2233 99 10 13 chr3 123775483 123775795 -94261363 - AluSq SINE Alu -2 311 1 2086 264 107 36 chr3 123775795 123776347 -94260811 - HAL1 LINE L1 -901 1606 962 269 297 141 50 chr3 123776368 123776651 -94260507 - HAL1 LINE L1 -2198 309 1 450 305 7 24 chr3 123776709 123776862 -94260296 - MIR3 SINE MIR -3 205 54 466 325 54 66 chr3 123777281 123777780 -94259378 + L2 LINE L2 2372 2864 -450 27 29 0 0 chr3 123777966 123778000 -94259158 + AT_rich Low_complexity Low_complexity 1 34 0 206 353 84 25 chr3 123778188 123778307 -94258851 + L2 LINE L2 3147 3272 0 351 269 58 88 chr3 123780814 123780985 -94256173 - MIR SINE MIR -1 261 96 28 48 0 0 chr3 123781843 123781885 -94255273 + AT_rich Low_complexity Low_complexity 1 42 0 399 319 12 31 chr3 123781945 123782108 -94255050 + MIR SINE MIR 48 207 -55 182 235 0 0 chr3 123783386 123783420 -94253738 + MIR SINE MIR 7 40 -222 476 295 82 6 chr3 123783904 123784087 -94253071 + MIR SINE MIR 65 261 -1 26 0 0 0 chr3 123784770 123784796 -94252362 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 123784839 123784860 -94252298 + AT_rich Low_complexity Low_complexity 1 21 0 238 322 34 51 chr3 123785341 123785459 -94251699 - L2 LINE L2 -19 3253 3138 727 286 26 4 chr3 123785583 123785814 -94251344 + L1MEc LINE L1 39 274 -6122 22 0 0 0 chr3 123786091 123786113 -94251045 + AT_rich Low_complexity Low_complexity 1 22 0 2616 138 74 30 chr3 123786147 123786648 -94250510 - L1MB1 LINE L1 -1 6167 5645 4861 190 99 5 chr3 123786648 123787823 -94249335 + L1M3 LINE L1 3960 5244 -902 1929 167 24 12 chr3 123787823 123788152 -94249006 - MER1B DNA MER1_type 0 339 7 1944 188 16 49 chr3 123788187 123788281 -94248877 + L1M3 LINE L1 5254 5350 -818 1529 185 87 3 chr3 123788281 123788616 -94248542 + MLT1A1 LTR MaLR 1 363 -2 1944 188 16 49 chr3 123788616 123788973 -94248185 + L1M3 LINE L1 5350 5690 -478 814 262 48 0 chr3 123788973 123789179 -94247979 - MIR SINE MIR -39 223 8 189 0 0 0 chr3 123789638 123789659 -94247499 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 225 0 0 0 chr3 123789658 123789683 -94247475 + (TA)n Simple_repeat Simple_repeat 2 26 0 260 323 20 10 chr3 123789779 123789878 -94247280 - MIR SINE MIR -3 259 160 280 0 0 0 chr3 123790422 123790453 -94246705 + (TTTA)n Simple_repeat Simple_repeat 1 68 0 2051 108 0 17 chr3 123790453 123790740 -94246418 - AluSx SINE Alu -30 282 1 195 42 0 0 chr3 123790894 123790918 -94246240 + (CATTA)n Simple_repeat Simple_repeat 2 25 0 257 252 99 0 chr3 123790934 123791045 -94246113 - MIR SINE MIR -17 245 124 1183 212 85 14 chr3 123791054 123791337 -94245821 + MLT1A2 LTR MaLR 1 303 -71 319 297 25 0 chr3 123791450 123791568 -94245590 + L1M4 LINE L1 4273 4393 -1753 201 133 0 0 chr3 123791575 123791605 -94245553 + (TAAG)n Simple_repeat Simple_repeat 4 33 0 327 321 23 49 chr3 123791696 123792045 -94245113 + L1M4 LINE L1 4495 4834 -1312 23 0 0 0 chr3 123792611 123792634 -94244524 + AT_rich Low_complexity Low_complexity 1 23 0 212 0 36 0 chr3 123796014 123796042 -94241116 + (TTG)n Simple_repeat Simple_repeat 2 30 0 294 291 24 47 chr3 123798656 123798783 -94238375 + MIR SINE MIR 33 156 -106 34 24 0 0 chr3 123799640 123799681 -94237477 + AT_rich Low_complexity Low_complexity 1 41 0 416 268 63 16 chr3 123800256 123800383 -94236775 + MIR SINE MIR 37 169 -93 377 308 70 46 chr3 123800633 123800862 -94236296 + MIR SINE MIR 1 227 -35 369 303 28 79 chr3 123801055 123801233 -94235925 + MER5B DNA MER1_type 2 170 -8 309 299 131 9 chr3 123801266 123801373 -94235785 + MER5A DNA MER1_type 70 189 0 379 227 47 78 chr3 123801768 123801896 -94235262 - MIR SINE MIR -55 207 84 280 324 46 9 chr3 123802411 123802519 -94234639 - MIR3 SINE MIR -43 165 54 316 103 35 0 chr3 123802725 123802783 -94234375 + (TA)n Simple_repeat Simple_repeat 1 60 0 297 322 145 33 chr3 123802814 123802966 -94234192 - L2 LINE L2 -2 3270 3102 316 229 43 0 chr3 123804090 123804160 -94232998 - MIR SINE MIR -113 149 77 31 58 0 0 chr3 123805826 123805878 -94231280 + AT_rich Low_complexity Low_complexity 1 52 0 2042 81 0 18 chr3 123808222 123808494 -94228664 - AluSc SINE Alu -9 300 34 22 0 0 0 chr3 123810251 123810273 -94226885 + AT_rich Low_complexity Low_complexity 1 22 0 534 168 22 0 chr3 123811382 123811519 -94225639 + GA-rich Low_complexity Low_complexity 2 141 0 2106 103 10 7 chr3 123813734 123814026 -94223132 + AluSg SINE Alu 3 295 -15 6245 171 20 19 chr3 123814318 123816081 -94221077 + L1MC1 LINE L1 4564 6327 -6 300 244 22 22 chr3 123816104 123816194 -94220964 + MIR SINE MIR 52 141 -67 1006 240 52 4 chr3 123816257 123816490 -94220668 - MIR SINE MIR -18 244 1 2018 128 24 0 chr3 123816864 123817160 -94219998 - AluSx SINE Alu -7 305 3 2423 86 0 0 chr3 123817276 123817579 -94219579 - AluY SINE Alu -8 303 1 203 375 48 0 chr3 123817860 123817964 -94219194 + L2 LINE L2 3164 3272 0 1712 180 31 0 chr3 123818191 123818480 -94218678 + AluJo SINE Alu 1 298 -14 4926 93 31 0 chr3 123818502 123819203 -94217955 + L1PA8 LINE L1 5447 6169 -3 2266 88 14 7 chr3 123820974 123821271 -94215887 + AluSx SINE Alu 1 299 -13 21 71 0 0 chr3 123821615 123821657 -94215501 + AT_rich Low_complexity Low_complexity 1 42 0 2032 135 3 3 chr3 123821753 123822050 -94215108 + AluSx SINE Alu 1 297 -15 233 330 92 6 chr3 123822922 123823095 -94214063 + L1M4 LINE L1 4803 4990 -1156 309 257 9 53 chr3 123823269 123823382 -94213776 + MLT1K LTR MaLR 458 565 -23 359 294 143 22 chr3 123823466 123823723 -94213435 - L1M4 LINE L1 -1730 4416 4192 2119 131 19 27 chr3 123823723 123824090 -94213068 + THE1B LTR MaLR 1 364 0 359 294 143 22 chr3 123824090 123824434 -94212724 - L1M4 LINE L1 -1954 4192 3742 246 62 0 0 chr3 123824619 123824651 -94212507 + (T)n Simple_repeat Simple_repeat 1 32 0 407 229 161 8 chr3 123825001 123825119 -94212039 - MLT1D LTR MaLR 0 549 414 1234 151 23 28 chr3 123825325 123825543 -94211615 - MLT1D LTR MaLR -287 218 2 235 130 56 0 chr3 123827004 123827058 -94210100 + (TAAG)n Simple_repeat Simple_repeat 2 58 0 3645 134 34 5 chr3 123827073 123827686 -94209472 - MER41B LTR ERV1 -2 633 3 1928 139 74 8 chr3 123827861 123828213 -94208945 + THE1C LTR MaLR 1 375 0 10015 115 28 39 chr3 123828213 123829811 -94207347 + THE1C-int LTR MaLR 1 1580 0 2066 123 60 29 chr3 123829811 123830160 -94206998 + THE1C LTR MaLR 1 360 -15 2170 137 3 23 chr3 123830160 123830503 -94206655 + MER1B DNA MER1_type 2 337 0 2307 109 0 0 chr3 123830903 123831207 -94205951 - AluSc SINE Alu -5 304 1 526 203 145 7 chr3 123831343 123831481 -94205677 - MIR SINE MIR -2 260 104 285 250 15 0 chr3 123832392 123832460 -94204698 - MLT1K LTR MaLR 0 588 520 253 318 0 45 chr3 123832491 123832601 -94204557 - MLT1K LTR MaLR -137 451 347 233 281 62 104 chr3 123832810 123833002 -94204156 - MLT1K LTR MaLR -289 299 116 266 250 0 31 chr3 123833073 123833137 -94204021 - MLT1K LTR MaLR -289 299 238 191 346 39 39 chr3 123834598 123834702 -94202456 - L2 LINE L2 -47 3225 3122 542 272 117 56 chr3 123836029 123836389 -94200769 + MLT1H LTR MaLR 1 382 -167 2046 145 19 29 chr3 123838926 123839305 -94197853 - THE1C LTR MaLR 0 375 1 2181 122 0 13 chr3 123840273 123840584 -94196574 - AluSx SINE Alu -5 307 1 349 335 57 5 chr3 123841390 123841599 -94195559 + L1MC4a LINE L1 4613 4832 -1314 250 318 0 11 chr3 123841612 123841700 -94195458 + L1MC4a LINE L1 4887 4973 -1173 309 310 67 54 chr3 123841806 123842119 -94195039 + L1MC4a LINE L1 5603 5919 -1889 30 66 0 13 chr3 123842355 123842408 -94194750 + AT_rich Low_complexity Low_complexity 1 54 -21 2282 99 3 0 chr3 123842408 123842712 -94194446 + AluSp SINE Alu 1 305 -8 30 66 0 13 chr3 123842712 123842734 -94194424 + AT_rich Low_complexity Low_complexity 54 75 0 183 216 0 0 chr3 123843139 123843176 -94193982 + L2 LINE L2 3267 3303 -10 285 357 79 0 chr3 123843287 123843413 -94193745 + MIR SINE MIR 84 219 -43 2495 55 0 0 chr3 123844361 123844653 -94192505 - AluY SINE Alu -19 292 1 309 89 0 0 chr3 123844693 123844738 -94192420 + (TTCCC)n Simple_repeat Simple_repeat 5 49 0 203 243 0 0 chr3 123844761 123844798 -94192360 + C-rich Low_complexity Low_complexity 3 39 0 225 270 0 0 chr3 123844811 123844922 -94192236 + C-rich Low_complexity Low_complexity 1 111 0 321 308 58 0 chr3 123845391 123845495 -94191663 + L2 LINE L2 3168 3277 -36 767 219 73 39 chr3 123845709 123845914 -94191244 - MLT1I LTR MaLR -2 407 196 1711 196 61 28 chr3 123845941 123846936 -94190222 - L1MB8 LINE L1 0 6178 4943 266 253 61 30 chr3 123847018 123847117 -94190041 - L1M4b LINE L1 -6022 837 736 325 274 95 32 chr3 123847166 123847356 -94189802 - L1M4b LINE L1 -6647 212 11 1431 239 78 80 chr3 123847554 123848107 -94189051 + MLT1E LTR MaLR 42 593 0 2517 184 8 10 chr3 123848490 123848985 -94188173 + L1MC3 LINE L1 7168 7661 -124 180 0 0 0 chr3 123848991 123849011 -94188147 + (TTG)n Simple_repeat Simple_repeat 2 21 0 202 241 23 46 chr3 123849468 123849555 -94187603 + G-rich Low_complexity Low_complexity 5 89 0 390 108 0 0 chr3 123849700 123849765 -94187393 + (TCCCC)n Simple_repeat Simple_repeat 5 69 0 1945 130 0 11 chr3 123849791 123850076 -94187082 - AluSx SINE Alu -30 282 1 1848 142 0 28 chr3 123850121 123850410 -94186748 + AluSx SINE Alu 2 282 -30 3858 237 69 10 chr3 123850436 123851537 -94185621 + L1MC/D LINE L1 1898 2932 -3494 2197 75 7 3 chr3 123851537 123851843 -94185315 + AluY SINE Alu 2 308 0 3858 237 69 10 chr3 123851843 123852280 -94184878 + L1MC/D LINE L1 2932 3342 -3084 186 43 0 0 chr3 123852280 123852303 -94184855 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 3858 237 69 10 chr3 123852303 123852620 -94184538 + L1MC/D LINE L1 3342 3865 -2561 7224 46 0 0 chr3 123852627 123853972 -94183186 - L1PA7 LINE L1 -2 6152 4805 12919 99 7 30 chr3 123853972 123856028 -94181130 - L1P3 LINE L1 -4406 2055 2 5857 248 31 10 chr3 123856026 123857028 -94180130 + L1MC/D LINE L1 3850 4904 -1522 * 3456 87 4 0 chr3 123857028 123857479 -94179679 + MLT2A2 LTR ERVL 1 453 0 5857 248 31 10 chr3 123857479 123858189 -94178969 + L1MC/D LINE L1 4904 5598 -828 1303 118 15 5 chr3 123858171 123858374 -94178784 + L1PA15 LINE L1 5721 5925 -240 * 533 65 0 13 chr3 123858373 123858450 -94178708 + L1MC/D LINE L1 5638 5713 -900 * 5481 131 38 31 chr3 123858423 123859402 -94177756 + L1MC1 LINE L1 5628 6613 0 443 141 0 0 chr3 123859443 123859514 -94177644 + THE1-int LTR MaLR 1373 1443 -137 1040 61 0 0 chr3 123859515 123859646 -94177512 + AluY SINE Alu 175 305 -6 1038 97 0 7 chr3 123859646 123859800 -94177358 + MSTA-int LTR MaLR 1499 1651 0 883 93 54 0 chr3 123859800 123859927 -94177231 + MSTA LTR MaLR 1 134 -294 655 112 0 10 chr3 123859927 123860025 -94177133 + MER4A LTR ERV1 1 97 -567 399 72 18 50 chr3 123860026 123860137 -94177021 + MER4A LTR ERV1 261 426 -238 2208 105 6 0 chr3 123860137 123860462 -94176696 - pTR5 LTR ERV1 -2046 392 66 331 224 31 20 chr3 123860462 123860560 -94176598 - LTR30 LTR ERV1 -80 642 544 2831 159 60 51 chr3 123860560 123861400 -94175758 - pTR5 LTR ERV1 -413 2025 743 1571 126 4 9 chr3 123861435 123861666 -94175492 + MER4B LTR ERV1 381 610 0 2424 114 149 37 chr3 123861668 123862240 -94174918 + MER4B-int LTR ERV1 1 686 -5912 1498 237 63 14 chr3 123862400 123862763 -94174395 + MER4B-int LTR ERV1 1845 2225 -4106 6693 123 56 27 chr3 123862779 123864098 -94173060 + MER4B-int LTR ERV1 199 1649 -3366 1135 208 75 0 chr3 123864098 123864338 -94172820 - LTR8 LTR ERV1 -433 258 1 3904 129 79 37 chr3 123864338 123865240 -94171918 + MER4B-int LTR ERV1 2737 3676 -2922 3159 135 61 30 chr3 123865238 123865832 -94171326 + MER4B-int LTR ERV1 3815 4426 -2172 * 396 55 0 0 chr3 123865951 123866006 -94171152 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 26 50 0 0 chr3 123866294 123866334 -94170824 + AT_rich Low_complexity Low_complexity 1 40 0 22 103 0 0 chr3 123866546 123866624 -94170534 + AT_rich Low_complexity Low_complexity 1 78 0 6154 120 31 6 chr3 123867127 123868182 -94168976 - L1MA4A LINE L1 0 6303 5223 344 256 58 8 chr3 123868182 123868303 -94168855 - Charlie7 DNA MER1_type -1122 1490 1364 4715 226 113 63 chr3 123869370 123871561 -94165597 - Charlie7 DNA MER1_type -311 2301 2 213 296 122 17 chr3 123871599 123871714 -94165444 + MIR SINE MIR 72 198 -64 342 171 0 0 chr3 123871842 123871912 -94165246 + GA-rich Low_complexity Low_complexity 1 70 0 29 0 0 0 chr3 123872721 123872750 -94164408 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr3 123872905 123872934 -94164224 + AT_rich Low_complexity Low_complexity 1 29 0 315 325 64 10 chr3 123873074 123873212 -94163946 + MIR SINE MIR 4 147 -61 880 183 0 30 chr3 123873338 123873507 -94163651 - FRAM SINE Alu -1 165 2 937 33 0 33 chr3 123873851 123873972 -94163186 - AluY SINE Alu 0 311 195 443 279 112 11 chr3 123874369 123874548 -94162610 + MIR SINE MIR 8 204 -58 337 270 151 8 chr3 123874564 123874690 -94162468 - MIR SINE MIR -8 254 111 245 175 0 0 chr3 123874773 123874813 -94162345 + MIR SINE MIR 217 256 -6 2657 151 14 18 chr3 123875023 123875512 -94161646 + L1MC1 LINE L1 5847 6333 0 327 283 76 11 chr3 123875831 123875923 -94161235 - MIR SINE MIR -95 113 16 980 176 0 18 chr3 123877514 123877684 -94159474 + AluJb SINE Alu 137 303 -9 339 226 39 0 chr3 123877703 123877805 -94159353 - L1MEd LINE L1 -2227 3902 3797 21 0 0 0 chr3 123877808 123877829 -94159329 + AT_rich Low_complexity Low_complexity 1 21 0 605 274 119 61 chr3 123878087 123878264 -94158894 - L1MEd LINE L1 -2693 3436 3271 2627 147 51 45 chr3 123878264 123878815 -94158343 - L1MB7 LINE L1 -13 6171 5618 605 274 119 61 chr3 123878815 123879177 -94157981 - L1MEd LINE L1 -2858 3271 2836 353 310 97 15 chr3 123879322 123879590 -94157568 - L1MEd LINE L1 -4976 1143 854 291 359 48 0 chr3 123881276 123881379 -94155779 - L2 LINE L2 -23 3249 3142 686 270 87 21 chr3 123882136 123882377 -94154781 + MIR SINE MIR 6 262 0 220 376 30 20 chr3 123883745 123883846 -94153312 - MIR SINE MIR -86 122 21 180 0 0 0 chr3 123884160 123884180 -94152978 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 23 33 0 0 chr3 123885646 123885676 -94151482 + AT_rich Low_complexity Low_complexity 1 30 0 2089 108 10 10 chr3 123885967 123886264 -94150894 + AluSc SINE Alu 1 297 -12 607 179 15 37 chr3 123886972 123887106 -94150052 + FLAM_A SINE Alu 2 132 -1 378 250 13 0 chr3 123887576 123887652 -94149506 + L2 LINE L2 3189 3265 -48 24 32 0 0 chr3 123887787 123887818 -94149340 + AT_rich Low_complexity Low_complexity 1 31 0 1712 170 35 29 chr3 123888923 123889265 -94147893 + MER2 DNA MER2_type 1 344 0 223 226 0 54 chr3 123890519 123890612 -94146546 + (CGGGG)n Simple_repeat Simple_repeat 4 91 0 563 239 30 0 chr3 123893457 123893591 -94143567 + MIR SINE MIR 96 233 -29 288 314 44 12 chr3 123894086 123894334 -94142824 + L1ME3A LINE L1 4738 4993 -1153 420 123 25 0 chr3 123894461 123894542 -94142616 + L1PA13 LINE L1 6080 6162 -1 1738 194 3 0 chr3 123894559 123894863 -94142295 + AluJo SINE Alu 1 305 -7 2385 148 78 2 chr3 123894863 123895337 -94141821 + L1MA8 LINE L1 5777 6286 -5 1058 278 47 31 chr3 123895465 123896090 -94141068 + L1ME3A LINE L1 5257 5886 -276 324 284 216 0 chr3 123896493 123896627 -94140531 - MER5A DNA MER1_type -1 188 26 1801 190 3 13 chr3 123896808 123897118 -94140040 + AluSx SINE Alu 4 310 -2 26 0 0 0 chr3 123898264 123898290 -94138868 + GC_rich Low_complexity Low_complexity 1 26 0 226 271 17 0 chr3 123898687 123898746 -94138412 + C-rich Low_complexity Low_complexity 4 63 0 1934 141 10 13 chr3 123900490 123900803 -94136355 + AluSx SINE Alu 1 312 0 1165 92 6 6 chr3 123901361 123901524 -94135634 + AluSc SINE Alu 122 284 -25 206 247 258 0 chr3 123901724 123901817 -94135341 - MIR SINE MIR -140 122 6 5546 112 23 22 chr3 123905748 123906570 -94130588 - L1PA13 LINE L1 0 6163 5351 2236 112 7 0 chr3 123906570 123906875 -94130283 - AluSx SINE Alu -5 307 1 5546 112 23 22 chr3 123906875 123907515 -94129643 - L1PA13 LINE L1 -812 5351 4713 253 323 164 21 chr3 123908235 123908424 -94128734 + MIR SINE MIR 8 223 -39 335 93 0 0 chr3 123910203 123910257 -94126901 + MADE1 DNA Mariner 1 54 -26 271 167 0 0 chr3 123910276 123910324 -94126834 - MLT1J LTR MaLR -355 156 109 207 0 0 0 chr3 123911875 123911898 -94125260 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 26 0 0 0 chr3 123912340 123912366 -94124792 + AT_rich Low_complexity Low_complexity 1 26 0 498 322 16 16 chr3 123912818 123913040 -94124118 + MLT1K LTR MaLR 327 551 -37 2314 84 3 3 chr3 123913040 123913351 -94123807 - AluY SINE Alu 0 311 1 498 322 16 16 chr3 123913351 123913386 -94123772 + MLT1K LTR MaLR 550 584 -4 1540 201 42 11 chr3 123913428 123913782 -94123376 - MLT1A1 LTR MaLR 0 365 1 225 224 17 0 chr3 123913915 123913973 -94123185 + (TA)n Simple_repeat Simple_repeat 2 60 0 9490 140 21 10 chr3 123914380 123916161 -94120997 - L1PA15-16 LINE L1 -3038 3811 2003 7030 196 25 5 chr3 123916282 123917820 -94119338 + L1P LINE L1 2681 4249 -1897 2085 117 0 0 chr3 123918648 123918960 -94118198 + AluSq SINE Alu 2 313 0 969 178 107 0 chr3 123921263 123921460 -94115698 - MIR SINE MIR -24 238 21 253 320 96 16 chr3 123921508 123921633 -94115525 + L2 LINE L2 2834 2968 -345 244 327 178 9 chr3 123921758 123921865 -94115293 - MIR SINE MIR -67 141 17 243 326 22 0 chr3 123921976 123922068 -94115090 + CT-rich Low_complexity Low_complexity 2 95 0 903 240 57 28 chr3 123922085 123922402 -94114756 + L1ME1 LINE L1 5509 5834 -332 8199 106 7 5 chr3 123922658 123923943 -94113215 - L1P LINE L1 -1134 5012 3726 467 249 71 25 chr3 123924086 123924283 -94112875 + L1MC5 LINE L1 7454 7659 -302 7025 118 5 16 chr3 123924286 123925375 -94111783 - HSMAR1 DNA Mariner 0 1287 212 621 259 88 55 chr3 123925897 123926294 -94110864 - MLT1J LTR MaLR -31 480 71 21 36 0 0 chr3 123928625 123928653 -94108505 + AT_rich Low_complexity Low_complexity 1 28 0 36 0 0 0 chr3 123929646 123929682 -94107476 + AT_rich Low_complexity Low_complexity 1 36 0 1242 162 8 12 chr3 123930077 123930318 -94106840 + L1PB1 LINE L1 5911 6150 -1 1494 147 107 7 chr3 123930662 123930961 -94106197 - MER51B LTR ERV1 0 377 49 490 129 140 11 chr3 123930976 123931069 -94106089 - MER51A LTR ERV1 -529 105 1 555 128 1 0 chr3 123931189 123931288 -94105870 + L1MA5 LINE L1 6023 6122 -169 4175 128 63 13 chr3 123931403 123932159 -94104999 - LOR1a-int LTR ERV1 -7127 993 200 1767 189 60 0 chr3 123932168 123932518 -94104640 - LOR1a-int LTR ERV1 -7749 371 1 472 276 35 22 chr3 123932521 123932749 -94104409 - LOR1a LTR ERV1 -3 494 264 3754 173 13 4 chr3 123932854 123934157 -94103001 - L1P4 LINE L1 -353 5813 4503 2075 99 40 13 chr3 123934744 123935047 -94102111 - AluY SINE Alu 0 311 1 22 35 0 0 chr3 123935494 123935523 -94101635 + AT_rich Low_complexity Low_complexity 1 29 0 746 127 79 18 chr3 123935540 123935705 -94101453 - LOR1-int LTR ERV1 -5123 2997 2823 2370 249 38 17 chr3 123935941 123936580 -94100578 + MER82 DNA MER2_type 1 652 -1 7395 101 10 11 chr3 123937497 123938672 -94098486 + L1P LINE L1 3805 4978 -1168 526 207 0 16 chr3 123938773 123938894 -94098264 + MLT1A2 LTR MaLR 256 374 0 2127 103 3 35 chr3 123939524 123939835 -94097323 + AluSx SINE Alu 1 301 -11 747 186 32 4 chr3 123939835 123940025 -94097133 + MER61D LTR ERV1 323 490 -11 903 186 0 0 chr3 123940658 123940819 -94096339 + MLT1B LTR MaLR 229 389 -1 644 294 53 44 chr3 123940820 123941232 -94095926 - MLT1J LTR MaLR -34 477 62 412 282 129 39 chr3 123941465 123941720 -94095438 + L1ME4a LINE L1 5687 5964 -157 8478 90 3 9 chr3 123942291 123943492 -94093666 - THE1-int LTR MaLR -386 1194 1 2923 224 53 12 chr3 123943610 123944514 -94092644 - L1 LINE L1 -2365 3781 2841 1044 246 73 56 chr3 123945482 123945560 -94091598 + L1M4b LINE L1 11 86 -6773 447 35 0 0 chr3 123945560 123945617 -94091541 + (CA)n Simple_repeat Simple_repeat 2 58 0 1044 246 73 56 chr3 123945617 123945896 -94091262 + L1M4b LINE L1 86 374 -6485 327 330 102 47 chr3 123946206 123946421 -94090737 + L2 LINE L2 2709 2935 -379 638 298 0 23 chr3 123946430 123946645 -94090513 + HERVL LTR ERVL 4665 4874 -780 220 370 86 29 chr3 123946881 123947327 -94089831 - L2 LINE L2 -940 2374 1837 2512 69 0 0 chr3 123947561 123947911 -94089247 - L1P LINE L1 -1514 4632 4283 4545 62 0 0 chr3 123947911 123948471 -94088687 + L1PA7 LINE L1 5581 6146 -8 325 307 12 34 chr3 123950029 123950246 -94086912 + C-rich Low_complexity Low_complexity 1 212 0 243 275 0 58 chr3 123950293 123950464 -94086694 + CT-rich Low_complexity Low_complexity 5 165 0 233 315 19 28 chr3 123951258 123951366 -94085792 + MLT1L LTR MaLR 437 543 -72 5548 64 9 0 chr3 123951788 123952565 -94084593 - L1P LINE L1 -4384 1762 979 277 236 18 0 chr3 123953066 123953121 -94084037 + L3 LINE CR1 1513 1568 -9 5410 87 9 4 chr3 123953199 123953989 -94083169 + L1P LINE L1 1 794 -5352 4203 133 23 34 chr3 123954179 123955076 -94082082 - HERVH LTR ERV1 -6341 1372 362 1559 62 22 9 chr3 123955112 123955338 -94081820 - L1PA2 LINE L1 0 6155 5927 2307 177 19 20 chr3 123955778 123956298 -94080860 - LTR27 LTR ERV1 -11 493 3 935 145 70 16 chr3 123956299 123956485 -94080673 - LTR27-int LTR ERV1 0 5217 5022 24 0 0 0 chr3 123956675 123956699 -94080459 + GC_rich Low_complexity Low_complexity 1 24 0 980 177 165 16 chr3 123957258 123957507 -94079651 - MLT1D LTR MaLR 0 505 220 639 275 59 44 chr3 123957508 123957846 -94079312 + L1MC4a LINE L1 5587 5929 -1879 268 301 81 16 chr3 123958720 123958906 -94078252 - MER110 LTR ERV1 -39 452 255 2229 39 32 3 chr3 123959428 123959713 -94077445 - MER11B LTR ERVK -943 293 1 360 0 0 0 chr3 123960186 123960226 -94076932 + (TA)n Simple_repeat Simple_repeat 2 41 0 182 321 84 53 chr3 123960390 123960521 -94076637 - MIR SINE MIR -39 223 89 702 232 51 34 chr3 123961550 123961727 -94075431 + MIR SINE MIR 68 247 -15 307 229 73 37 chr3 123962015 123962079 -94075079 - LOR1a LTR ERV1 -334 163 91 2116 113 0 0 chr3 123962079 123962375 -94074783 - AluSg SINE Alu 0 304 9 307 229 73 37 chr3 123962375 123962418 -94074740 - LOR1a LTR ERV1 -406 91 51 190 73 49 0 chr3 123962418 123962459 -94074699 + (TA)n Simple_repeat Simple_repeat 1 43 0 3591 116 40 6 chr3 123962462 123962777 -94074381 - LOR1-int LTR ERV1 -5808 2312 2009 210 37 0 0 chr3 123962777 123962804 -94074354 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3591 116 40 6 chr3 123962804 123963162 -94073996 - LOR1-int LTR ERV1 -6111 2009 1616 978 232 14 0 chr3 123963301 123963577 -94073581 + L1PA5 LINE L1 5860 6139 -15 230 228 40 20 chr3 123963918 123964019 -94073139 + (TCTTG)n Simple_repeat Simple_repeat 1 103 0 7220 126 59 34 chr3 123964384 123966634 -94070524 + MER4A-int LTR ERV1 3936 6593 -5 594 99 0 30 chr3 123966645 123966746 -94070412 + MER4A LTR ERV1 1 98 -566 1701 132 3 51 chr3 123966746 123967109 -94070049 + MER4A LTR ERV1 261 664 0 1793 134 31 7 chr3 123967110 123967402 -94069756 + MSTA LTR MaLR 130 428 0 213 344 106 22 chr3 123967490 123967670 -94069488 - L2 LINE L2 -877 2437 2243 2348 86 10 0 chr3 123968035 123968338 -94068820 + AluSc SINE Alu 1 306 -3 226 218 0 103 chr3 123968589 123968667 -94068491 + MIR SINE MIR 129 198 -64 3225 133 73 0 chr3 123969602 123970152 -94067006 - L1PA16 LINE L1 -8 6158 5569 724 183 0 0 chr3 123970152 123970278 -94066880 + L1PA16 LINE L1 5444 5569 -597 374 119 0 0 chr3 123971392 123971459 -94065699 + L1MA8 LINE L1 6225 6291 0 15850 37 1 2 chr3 123971472 123973520 -94063638 - L1P LINE L1 -1312 4834 2790 2902 45 0 0 chr3 123973520 123973871 -94063287 + L1PA5 LINE L1 5796 6147 -7 474 241 141 0 chr3 123974154 123974353 -94062805 + L1ME LINE L1 5579 5805 -316 24 32 0 0 chr3 123974662 123974693 -94062465 + AT_rich Low_complexity Low_complexity 1 31 0 635 298 22 11 chr3 123975052 123975233 -94061925 - MER5A DNA MER1_type 0 189 7 202 175 123 0 chr3 123975408 123975465 -94061693 + L3 LINE CR1 904 967 -610 1841 163 0 17 chr3 123976092 123976392 -94060766 - AluJb SINE Alu -17 295 1 302 277 284 14 chr3 123976392 123976533 -94060625 - MER5A DNA MER1_type -2 187 9 1629 295 82 30 chr3 123976990 123977628 -94059530 + L2 LINE L2 2224 2894 -420 570 225 23 8 chr3 123977626 123977755 -94059403 + L2 LINE L2 3183 3313 0 * 31 0 0 0 chr3 123979742 123979773 -94057385 + AT_rich Low_complexity Low_complexity 1 31 0 470 338 89 49 chr3 123980461 123980986 -94056172 - L2 LINE L2 0 3313 2770 915 138 0 0 chr3 123981243 123981395 -94055763 + (TA)n Simple_repeat Simple_repeat 2 153 0 24 32 0 0 chr3 123981922 123981953 -94055205 + AT_rich Low_complexity Low_complexity 1 31 0 260 245 0 130 chr3 123982071 123982214 -94054944 - L2 LINE L2 -1015 2299 2184 534 241 66 18 chr3 123982214 123982380 -94054778 - MER5B DNA MER1_type 0 178 5 260 245 0 130 chr3 123982380 123982420 -94054738 - L2 LINE L2 -1130 2184 2140 1224 178 84 51 chr3 123982505 123982984 -94054174 + MLT1E2 LTR MaLR 151 626 0 1692 157 3 27 chr3 123983073 123983366 -94053792 - AluJb SINE Alu -16 296 11 294 210 226 73 chr3 123985382 123985506 -94051652 + MER5A DNA MER1_type 41 183 -6 306 368 8 0 chr3 123986918 123987035 -94050123 - MIR SINE MIR -58 150 33 209 205 0 0 chr3 123987145 123987184 -94049974 - MIR SINE MIR -65 143 105 2067 114 0 36 chr3 123987560 123987867 -94049291 - AluSx SINE Alu -16 296 1 737 236 63 0 chr3 123987871 123988062 -94049096 - L1ME3A LINE L1 -8 6162 5960 12891 124 30 71 chr3 123988068 123990241 -94046917 + Tigger1 DNA MER2_type 1 2262 -156 4532 62 3 56 chr3 123990241 123990889 -94046269 - L1PA6 LINE L1 -2 6152 5539 12891 124 30 71 chr3 123990889 123991097 -94046061 + Tigger1 DNA MER2_type 2262 2275 -143 1755 194 0 0 chr3 123991097 123991396 -94045762 - AluJo SINE Alu -12 300 2 12891 124 30 71 chr3 123991396 123991534 -94045624 + Tigger1 DNA MER2_type 2275 2417 -1 469 157 0 0 chr3 123991538 123991627 -94045531 - L1ME3A LINE L1 -218 5952 5864 217 248 78 85 chr3 123991879 123992008 -94045150 - L2 LINE L2 -8 3305 3178 479 297 0 0 chr3 123993921 123994032 -94043126 + MER81 DNA DNA 4 114 0 205 349 0 0 chr3 123994033 123994096 -94043062 - MIR3 SINE MIR -27 181 119 1643 169 97 0 chr3 123994456 123994787 -94042371 - MLT1A1 LTR MaLR -2 363 1 2361 72 0 16 chr3 123995904 123996209 -94040949 - AluY SINE Alu -11 300 1 222 287 178 30 chr3 123996211 123996312 -94040846 + L2 LINE L2 3197 3312 -1 279 361 124 5 chr3 123996466 123996660 -94040498 + MIR SINE MIR 41 257 -5 246 406 9 0 chr3 123996739 123996845 -94040313 + MIR3 SINE MIR 50 156 -52 517 228 19 63 chr3 123996968 123997126 -94040032 - LTR16A LTR ERVL -1 449 299 270 44 0 44 chr3 123997336 123997381 -94039777 + MADE1 DNA Mariner 38 80 0 4395 231 62 50 chr3 123997553 123998077 -94039081 + L1M4 LINE L1 2433 2949 -3197 663 203 0 23 chr3 123998077 123998205 -94038953 - FLAM_A SINE Alu -8 125 1 4395 231 62 50 chr3 123998205 123999391 -94037767 + L1M4 LINE L1 2949 4163 -1983 1080 229 44 7 chr3 123999378 123999653 -94037505 + L1ME1 LINE L1 5812 6096 -70 * 297 259 46 9 chr3 123999654 123999762 -94037396 + L1ME1 LINE L1 6048 6159 -7 366 236 34 11 chr3 124000692 124000781 -94036377 - MIR SINE MIR -23 239 149 351 164 27 0 chr3 124001208 124001281 -94035877 - MER103 DNA DNA -77 89 15 1684 171 127 26 chr3 124002813 124003200 -94033958 + MSTA LTR MaLR 1 426 -2 1363 227 28 59 chr3 124003201 124003310 -94033848 + MER110A LTR ERV1 62 173 -318 1966 144 141 8 chr3 124003310 124003686 -94033472 - MSTB LTR MaLR 0 426 1 1363 227 28 59 chr3 124003686 124004006 -94033152 + MER110A LTR ERV1 173 471 -20 1104 220 18 26 chr3 124004679 124004952 -94032206 - MLT1A2 LTR MaLR 0 374 104 330 212 0 61 chr3 124005570 124005669 -94031489 - L1MC4 LINE L1 -1339 6703 6611 324 120 0 0 chr3 124005690 124005740 -94031418 + (CA)n Simple_repeat Simple_repeat 2 51 0 2676 85 31 8 chr3 124005768 124006157 -94031001 + MLT2A1 LTR ERVL 1 398 -46 412 179 0 60 chr3 124006241 124006409 -94030749 + (TA)n Simple_repeat Simple_repeat 2 159 0 2178 145 3 0 chr3 124006436 124006747 -94030411 - AluSx SINE Alu 0 312 1 258 156 0 0 chr3 124006782 124006827 -94030331 + (TG)n Simple_repeat Simple_repeat 2 46 0 492 214 19 0 chr3 124007788 124007891 -94029267 - MER63B DNA MER1_type 0 436 332 848 153 0 7 chr3 124007894 124008031 -94029127 + FLAM_C SINE Alu 5 140 -3 1524 177 24 24 chr3 124008031 124008365 -94028793 - MER63B DNA MER1_type -102 334 1 280 301 59 37 chr3 124008423 124008778 -94028380 - L1MC5 LINE L1 -44 7917 7555 255 345 55 51 chr3 124009455 124009924 -94027234 - L2 LINE L2 -568 2746 2276 193 374 48 0 chr3 124010155 124010238 -94026920 + L2 LINE L2 2693 2779 -535 257 268 0 0 chr3 124010459 124010515 -94026643 - L2 LINE L2 -23 3249 3194 3307 169 50 5 chr3 124011449 124012084 -94025074 - L1MB3 LINE L1 -1 6182 5519 230 344 32 79 chr3 124012512 124012701 -94024457 - L2 LINE L2 -4 3268 3089 1433 199 132 20 chr3 124013144 124013500 -94023658 - MSTD LTR MaLR 0 396 1 1896 177 7 7 chr3 124013821 124014131 -94023027 + AluJb SINE Alu 1 310 -2 1374 194 56 14 chr3 124014845 124015129 -94022029 + AluJo SINE Alu 1 296 -16 204 158 0 0 chr3 124015238 124015276 -94021882 + C-rich Low_complexity Low_complexity 3 40 0 2168 112 0 3 chr3 124015276 124015571 -94021587 - AluSg SINE Alu -16 294 1 342 234 39 78 chr3 124015578 124015732 -94021426 + L1MC5 LINE L1 7766 7913 -48 687 307 46 36 chr3 124016669 124016975 -94020183 - L2 LINE L2 0 3313 3005 2222 211 73 87 chr3 124017473 124018434 -94018724 + L1MC4 LINE L1 7095 8041 -1 228 209 0 0 chr3 124018529 124018572 -94018586 - L2 LINE L2 -13 3259 3217 493 248 75 8 chr3 124018695 124018828 -94018330 - MIR SINE MIR -50 212 71 1114 192 13 34 chr3 124018941 124019175 -94017983 + AluJo SINE Alu 27 255 -57 606 118 0 0 chr3 124019311 124019396 -94017762 + AluS SINE Alu 1 85 -227 451 199 58 64 chr3 124019396 124019552 -94017606 + pTR5 LTR ERV1 743 897 -1541 1472 87 0 15 chr3 124019561 124019756 -94017402 - AluSx SINE Alu -120 192 1 2422 66 0 7 chr3 124020120 124020423 -94016735 + AluY SINE Alu 1 301 -10 1874 154 3 10 chr3 124020505 124020811 -94016347 + AluSq SINE Alu 4 307 -6 548 212 45 63 chr3 124021179 124021401 -94015757 + L1MA9 LINE L1 5788 6005 -307 2408 93 13 0 chr3 124021723 124022024 -94015134 - AluSx SINE Alu -7 305 1 327 247 73 84 chr3 124022831 124023009 -94014149 + L1ME4a LINE L1 5881 6056 -65 780 116 8 8 chr3 124023062 124023191 -94013967 - THE1C LTR MaLR 0 375 247 2058 91 9 138 chr3 124023195 124023636 -94013522 - THE1C-int LTR MaLR -1179 401 18 574 198 81 20 chr3 124023654 124023851 -94013307 - THE1C LTR MaLR -4 371 163 189 107 0 0 chr3 124025250 124025278 -94011880 + (TG)n Simple_repeat Simple_repeat 1 28 0 234 196 0 18 chr3 124025278 124025334 -94011824 + GA-rich Low_complexity Low_complexity 2 56 0 2272 97 3 10 chr3 124025801 124026111 -94011047 + AluSx SINE Alu 1 308 -4 1654 170 3 24 chr3 124026682 124026971 -94010187 - AluJo SINE Alu -29 283 1 753 220 38 0 chr3 124026971 124027130 -94010028 + MER20 DNA MER1_type 55 219 0 275 269 93 0 chr3 124027185 124027293 -94009865 + MLT1L LTR MaLR 163 280 -335 23 0 0 0 chr3 124027701 124027724 -94009434 + AT_rich Low_complexity Low_complexity 1 23 0 1780 161 7 13 chr3 124028290 124028595 -94008563 - AluJb SINE Alu -9 303 1 2244 125 0 0 chr3 124028891 124029196 -94007962 + AluSx SINE Alu 1 305 -7 392 217 148 0 chr3 124030448 124030563 -94006595 + L2 LINE L2 3182 3313 0 2886 187 123 73 chr3 124031021 124031378 -94005780 - Charlie1a DNA MER1_type -1828 933 595 1783 152 17 0 chr3 124031378 124031674 -94005484 - AluSx SINE Alu -7 305 5 2886 187 123 73 chr3 124031674 124032204 -94004954 - Charlie1a DNA MER1_type -2166 595 2 564 268 25 10 chr3 124032205 124032412 -94004746 - L1M4 LINE L1 -1103 5043 4834 297 282 74 32 chr3 124033276 124033508 -94003650 + L1ME LINE L1 5415 5658 -506 26 0 0 0 chr3 124033735 124033761 -94003397 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr3 124033800 124033830 -94003328 + AT_rich Low_complexity Low_complexity 1 30 0 883 177 0 44 chr3 124034150 124034308 -94002850 + FRAM SINE Alu 2 152 -24 26 36 0 0 chr3 124034309 124034337 -94002821 + AT_rich Low_complexity Low_complexity 1 28 0 201 121 0 0 chr3 124037444 124037477 -93999681 + (ATG)n Simple_repeat Simple_repeat 3 35 0 28 0 0 0 chr3 124038359 124038387 -93998771 + AT_rich Low_complexity Low_complexity 1 28 0 355 269 83 40 chr3 124038424 124038755 -93998403 - MLT1J LTR MaLR -21 474 86 784 254 0 0 chr3 124038758 124038923 -93998235 + FRAM SINE Alu 1 165 -11 1981 61 0 16 chr3 124039831 124040077 -93997081 + AluY SINE Alu 1 242 -69 2338 58 3 17 chr3 124040181 124040476 -93996682 + AluY SINE Alu 17 307 -4 1529 155 11 0 chr3 124040490 124040755 -93996403 + L1PA16 LINE L1 5457 5724 -442 2245 165 41 2 chr3 124040843 124041256 -93995902 + L1PA16 LINE L1 5737 6165 -1 2185 95 3 3 chr3 124041411 124041746 -93995412 + AluSq SINE Alu 5 339 0 1316 122 6 6 chr3 124044383 124044597 -93992561 - AluSg/x SINE Alu 0 319 106 2399 35 6 41 chr3 124045262 124045576 -93991582 + L1PA5 LINE L1 5852 6154 0 22 0 0 0 chr3 124045631 124045653 -93991505 + AT_rich Low_complexity Low_complexity 1 22 0 * 370 311 142 44 chr3 124045633 124045992 -93991166 + L1MEd LINE L1 938 1419 -1071 363 341 65 34 chr3 124046494 124046998 -93990160 + L1MC4a LINE L1 5355 5874 -1934 201 147 0 0 chr3 124047083 124047117 -93990041 + (TATATG)n Simple_repeat Simple_repeat 5 38 0 699 294 123 0 chr3 124047740 124047968 -93989190 + MIR SINE MIR 5 260 -2 1165 217 100 9 chr3 124048238 124048675 -93988483 - MLT1F LTR MaLR 0 542 1 453 321 89 9 chr3 124049824 124050048 -93987110 + MIR SINE MIR 6 247 -15 462 238 8 8 chr3 124050559 124050681 -93986477 - MLT1K LTR MaLR -9 579 458 24431 137 13 17 chr3 124050683 124051926 -93985232 + L1PA8A LINE L1 1 1248 -5198 195 100 0 0 chr3 124051926 124051956 -93985202 + (CAA)n Simple_repeat Simple_repeat 1 30 0 24431 137 13 17 chr3 124051956 124054951 -93982207 + L1PA8A LINE L1 1248 4267 -2179 2044 149 3 0 chr3 124054951 124055253 -93981905 + AluSx SINE Alu 1 303 -9 24431 137 13 17 chr3 124055253 124057407 -93979751 + L1PA8A LINE L1 4267 6428 -18 204 40 0 0 chr3 124057414 124057439 -93979719 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 527 378 46 14 chr3 124057491 124057906 -93979252 - MLT1K LTR MaLR -133 455 28 181 243 0 0 chr3 124058061 124058098 -93979060 + L2 LINE L2 3269 3305 -8 186 43 0 0 chr3 124059156 124059179 -93977979 + (CCAA)n Simple_repeat Simple_repeat 2 24 0 201 316 95 32 chr3 124059731 124059826 -93977332 - MIR SINE MIR -70 192 92 189 0 0 0 chr3 124060775 124060796 -93976362 + (T)n Simple_repeat Simple_repeat 1 21 0 1537 176 6 71 chr3 124063235 124063559 -93973599 + AluJo SINE Alu 1 303 -9 432 0 0 0 chr3 124063758 124063806 -93973352 + (TG)n Simple_repeat Simple_repeat 2 49 0 6162 94 34 0 chr3 124064236 124065566 -93971592 + L1PA11 LINE L1 4809 6173 -1 597 311 6 0 chr3 124066507 124066674 -93970484 - MIR SINE MIR -49 213 46 2436 68 0 0 chr3 124069060 124069354 -93967804 - AluY SINE Alu -17 294 1 1528 38 0 0 chr3 124069831 124070014 -93967144 - AluYb8 SINE Alu 0 318 136 576 101 10 0 chr3 124070211 124070310 -93966848 - L1MB2 LINE L1 0 6171 6072 1843 62 8 4 chr3 124070325 124070568 -93966590 - L1PA10 LINE L1 -2 6166 5923 2286 111 0 0 chr3 124070998 124071295 -93965863 - AluSg SINE Alu -13 297 1 895 148 0 13 chr3 124073466 124073615 -93963543 - MLT1C LTR MaLR 0 467 321 6738 131 5 17 chr3 124073623 124075010 -93962148 - L1MA2 LINE L1 0 6304 4944 478 212 188 52 chr3 124075011 124075299 -93961859 - LTR37A LTR ERV1 -64 362 36 453 305 119 6 chr3 124077850 124078027 -93959131 - MIR SINE MIR -34 228 32 204 295 16 0 chr3 124078257 124078318 -93958840 + MIR3 SINE MIR 110 171 -37 420 304 112 46 chr3 124078938 124079330 -93957828 + MLT1K LTR MaLR 103 520 -68 3495 216 49 9 chr3 124079352 124080507 -93956651 - L1ME1 LINE L1 0 6166 4970 337 292 243 41 chr3 124080653 124081068 -93956090 + L1M4 LINE L1 4552 5050 -1096 22 0 0 0 chr3 124082823 124082845 -93954313 + AT_rich Low_complexity Low_complexity 1 22 0 523 321 97 8 chr3 124083215 124083483 -93953675 - LTR16A LTR ERVL -158 292 1 515 268 146 80 chr3 124083571 124084011 -93953147 - MLT1H LTR MaLR -8 541 73 2209 131 0 0 chr3 124084867 124085172 -93951986 - AluSx SINE Alu -7 305 1 228 377 16 33 chr3 124085177 124085360 -93951798 - MER5A DNA MER1_type -3 186 7 21 0 0 0 chr3 124085815 124085836 -93951322 + AT_rich Low_complexity Low_complexity 1 21 0 1358 201 11 33 chr3 124085950 124086223 -93950935 - AluJo SINE Alu -45 267 1 23 0 0 0 chr3 124086231 124086254 -93950904 + AT_rich Low_complexity Low_complexity 1 23 0 561 366 121 11 chr3 124087333 124087778 -93949380 + L3 LINE CR1 192 685 -892 1256 219 66 14 chr3 124087983 124088400 -93948758 + MLT1D LTR MaLR 3 505 0 836 181 168 58 chr3 124090155 124090465 -93946693 - MER2 DNA MER2_type 0 344 1 298 333 161 42 chr3 124090616 124090901 -93946257 + L2 LINE L2 2953 3271 -1 454 285 41 16 chr3 124091009 124091132 -93946026 + L2 LINE L2 3186 3311 -2 1382 241 24 77 chr3 124092013 124092510 -93944648 + MLT1D LTR MaLR 3 473 -32 515 312 80 56 chr3 124092758 124093008 -93944150 - L2 LINE L2 -845 2469 2214 1601 158 61 7 chr3 124093536 124093815 -93943343 - AluJo SINE Alu -11 301 8 2627 148 12 5 chr3 124094417 124094842 -93942316 - MSTC LTR MaLR 0 428 1 2151 268 137 37 chr3 124095343 124096500 -93940658 + L1ME2 LINE L1 299 1572 -4899 845 269 65 70 chr3 124096538 124096906 -93940252 - LTR52 LTR ERVL -37 384 17 1379 197 91 4 chr3 124096906 124097180 -93939978 - AluJb SINE Alu -14 298 1 845 269 65 70 chr3 124097180 124097197 -93939961 - LTR52 LTR ERVL -404 17 1 1818 269 44 60 chr3 124097199 124097518 -93939640 + L1ME2 LINE L1 1804 2127 -4995 225 0 0 0 chr3 124097518 124097543 -93939615 + (CA)n Simple_repeat Simple_repeat 1 25 0 1818 269 44 60 chr3 124097543 124097776 -93939382 + L1ME2 LINE L1 2127 2362 -4760 1278 195 140 0 chr3 124097776 124098033 -93939125 - AluJb SINE Alu -19 293 1 1818 269 44 60 chr3 124098033 124098494 -93938664 + L1ME2 LINE L1 2362 2802 -4320 1650 210 40 17 chr3 124098511 124098915 -93938243 + LTR52 LTR ERVL 1 413 -8 3417 255 121 22 chr3 124098919 124099806 -93937352 + L1ME2 LINE L1 2827 3625 -3316 575 175 114 0 chr3 124099806 124099920 -93937238 + FLAM_C SINE Alu 5 131 -2 1190 195 107 4 chr3 124099924 124100186 -93936972 + AluJo SINE Alu 3 291 -11 3417 255 121 22 chr3 124100186 124100443 -93936715 + L1ME2 LINE L1 3627 3857 -3084 2287 72 45 0 chr3 124100443 124100734 -93936424 + AluY SINE Alu 1 304 -7 3417 255 121 22 chr3 124100734 124101388 -93935770 + L1ME2 LINE L1 3857 4768 -2173 1085 204 85 107 chr3 124101394 124101737 -93935421 + L1ME2 LINE L1 5483 5811 -1130 2171 103 0 6 chr3 124101737 124102049 -93935109 + AluYa8 SINE Alu 1 310 0 1085 204 85 107 chr3 124102049 124102259 -93934899 + L1ME2 LINE L1 5811 6024 -917 2293 237 73 41 chr3 124102301 124103112 -93934046 + L1ME2 LINE L1 6134 7128 -1 869 195 219 120 chr3 124103296 124103721 -93933437 + MLT1A2 LTR MaLR 1 467 0 373 295 96 25 chr3 124104328 124104519 -93932639 + MIR SINE MIR 2 206 -56 24 53 0 0 chr3 124104755 124104793 -93932365 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr3 124105543 124105569 -93931589 + AT_rich Low_complexity Low_complexity 1 26 0 4633 204 56 17 chr3 124105910 124106729 -93930429 - L1MB7 LINE L1 -1 6183 5398 1298 216 91 14 chr3 124106729 124107091 -93930067 - MLT1B LTR MaLR 0 390 1 4633 204 56 17 chr3 124107091 124107116 -93930042 - L1MB7 LINE L1 -786 5398 5375 1864 143 3 39 chr3 124107116 124107423 -93929735 - AluJb SINE Alu -16 296 1 4633 204 56 17 chr3 124107423 124108625 -93928533 - L1MB7 LINE L1 -809 5375 4050 198 0 0 0 chr3 124108627 124108649 -93928509 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 44320 34 1 3 chr3 124108649 124114802 -93922356 - L1PA3 LINE L1 -13 6142 3 1568 220 36 14 chr3 124114806 124115219 -93921939 - L1MB7 LINE L1 -2091 4055 3634 261 0 0 0 chr3 124117208 124117237 -93919921 + (TTG)n Simple_repeat Simple_repeat 2 30 0 647 228 15 0 chr3 124117452 124117588 -93919570 + Charlie8 DNA MER1_type 105 242 -2175 377 315 13 13 chr3 124117594 124117743 -93919415 + MIR SINE MIR 104 252 -10 226 163 143 0 chr3 124117821 124117870 -93919288 + Charlie8 DNA MER1_type 1373 1428 -989 313 374 0 0 chr3 124118648 124118763 -93918395 + L3 LINE CR1 1380 1494 -83 355 234 0 39 chr3 124121486 124121563 -93915595 - MLT1E1 LTR MaLR -548 106 33 1819 236 162 14 chr3 124122337 124122905 -93914253 - MLT1E1 LTR MaLR -2 652 1 30 27 0 0 chr3 124123523 124123560 -93913598 + AT_rich Low_complexity Low_complexity 1 37 0 682 141 16 43 chr3 124125423 124125608 -93911550 + CT-rich Low_complexity Low_complexity 1 180 0 675 238 173 19 chr3 124126336 124126550 -93910608 + MIR SINE MIR 9 255 -7 189 238 0 0 chr3 124127399 124127441 -93909717 - MIR3 SINE MIR -13 195 154 421 162 15 0 chr3 124127486 124127554 -93909604 + MER21B LTR ERV1 1 69 -794 * 2845 168 89 35 chr3 124127552 124128158 -93909000 + MER21B LTR ERV1 224 862 -1 247 254 211 40 chr3 124128190 124128418 -93908740 + LTR37A LTR ERV1 140 406 -20 221 222 0 48 chr3 124129640 124129703 -93907455 + CT-rich Low_complexity Low_complexity 2 61 0 186 364 0 0 chr3 124129703 124129769 -93907389 - L2 LINE L2 -2 3270 3205 184 242 32 48 chr3 124130045 124130107 -93907051 - MIR SINE MIR -1 261 201 1070 174 61 0 chr3 124130464 124130677 -93906481 + L1M4 LINE L1 5506 5731 -453 839 165 70 7 chr3 124130675 124130867 -93906291 - L1MB8 LINE L1 -274 5900 5700 * 433 184 13 0 chr3 124131311 124131387 -93905771 - FLAM_A SINE Alu -14 128 52 775 173 196 0 chr3 124132221 124132394 -93904764 - MER3 DNA MER1_type 0 209 3 230 254 18 0 chr3 124132617 124132672 -93904486 - L2 LINE L2 0 3313 3258 2277 189 27 2 chr3 124134499 124134950 -93902208 + MLT1C LTR MaLR 3 464 -3 184 167 45 152 chr3 124135609 124135675 -93901483 + L2 LINE L2 3255 3313 0 514 290 11 84 chr3 124136764 124137026 -93900132 + MIR SINE MIR 3 245 -17 558 286 121 60 chr3 124137936 124138251 -93898907 + L2 LINE L2 2980 3313 0 193 250 114 45 chr3 124138244 124138332 -93898826 - L2 LINE L2 -12 3301 3208 * 2069 136 3 0 chr3 124138378 124138673 -93898485 + AluSq SINE Alu 1 296 -17 475 234 37 0 chr3 124139286 124139393 -93897765 - MER63B DNA MER1_type -2 433 323 1215 208 16 17 chr3 124139399 124139719 -93897439 + MLT1A1 LTR MaLR 1 365 0 943 236 113 7 chr3 124139729 124140013 -93897145 - MER63B DNA MER1_type -122 314 1 1141 256 146 26 chr3 124140998 124141583 -93895575 - L2 LINE L2 -2 3311 2681 397 327 0 0 chr3 124141746 124141847 -93895311 + MER5A DNA MER1_type 6 106 -83 404 233 352 9 chr3 124141910 124142129 -93895029 - L2 LINE L2 -643 2671 2378 696 208 35 40 chr3 124142188 124142390 -93894768 + MLT2D LTR ERVL 81 281 -133 2093 136 0 3 chr3 124142426 124142901 -93894257 - AluSx SINE Alu 0 474 1 1396 259 72 13 chr3 124142987 124143434 -93893724 - L2 LINE L2 -1035 2279 1807 1289 141 92 4 chr3 124143475 124143737 -93893421 - L1MC2 LINE L1 0 6344 6060 250 292 5 15 chr3 124143743 124143809 -93893349 + MIR SINE MIR 53 122 -86 252 288 30 0 chr3 124144350 124144416 -93892742 + L3 LINE CR1 1493 1560 -17 22 0 0 0 chr3 124144763 124144785 -93892373 + AT_rich Low_complexity Low_complexity 1 22 0 592 211 64 44 chr3 124145250 124145454 -93891704 + MER113 DNA MER1_type? 34 241 -280 181 0 0 65 chr3 124145472 124145503 -93891655 + (TAA)n Simple_repeat Simple_repeat 1 29 0 237 209 179 0 chr3 124145670 124145737 -93891421 + MER113 DNA MER1_type? 379 457 -64 2115 167 32 49 chr3 124145770 124146202 -93890956 + MSTB1 LTR MaLR 8 432 0 610 264 84 42 chr3 124147155 124147537 -93889621 - L1M4b LINE L1 -2773 4184 3787 1131 260 98 47 chr3 124147555 124147851 -93889307 + MER74A LTR ERVL 15 345 -213 183 42 0 0 chr3 124147851 124147875 -93889283 + (CCTTG)n Simple_repeat Simple_repeat 3 26 0 1131 260 98 47 chr3 124147875 124148048 -93889110 + MER74A LTR ERVL 345 508 -50 2480 222 68 30 chr3 124148090 124149951 -93887207 - L1M4b LINE L1 -3170 3787 1619 2681 189 41 45 chr3 124149958 124150597 -93886561 - L1MB8 LINE L1 -9 6169 5534 508 251 84 11 chr3 124150597 124150788 -93886370 - L1M4b LINE L1 -5230 1629 1425 700 137 26 17 chr3 124150825 124150942 -93886216 - Tigger1 DNA MER2_type 0 2418 2301 7086 144 35 3 chr3 124150942 124153194 -93883964 + L1MA1 LINE L1 3995 6302 0 12835 140 28 51 chr3 124153207 124155572 -93881586 - Tigger1 DNA MER2_type -105 2313 5 679 211 0 23 chr3 124155670 124155803 -93881355 - FLAM_A SINE Alu -3 130 1 548 279 34 90 chr3 124156730 124156984 -93880174 - MLT1J LTR MaLR -207 304 37 611 200 9 0 chr3 124156984 124157099 -93880059 + FLAM_C SINE Alu 1 116 -17 342 0 0 0 chr3 124157102 124157140 -93880018 + (TA)n Simple_repeat Simple_repeat 1 38 0 * 696 35 0 0 chr3 124157139 124157226 -93879932 + (GA)n Simple_repeat Simple_repeat 2 88 0 548 279 34 90 chr3 124157140 124157289 -93879869 - MLT1J LTR MaLR -476 35 1 2157 196 21 5 chr3 124157804 124158223 -93878935 - MSTB LTR MaLR 0 426 1 220 26 26 26 chr3 124158977 124159015 -93878143 + (TA)n Simple_repeat Simple_repeat 2 39 0 350 284 0 0 chr3 124159224 124159298 -93877860 + MIR3 SINE MIR 111 184 -24 1824 87 62 0 chr3 124210100 124210342 -93826816 + AluSq SINE Alu 56 312 -1 309 322 120 29 chr3 124210652 124210860 -93826298 + MIR SINE MIR 36 262 0 381 283 123 0 chr3 124212787 124212893 -93824265 - L2 LINE L2 -3 3269 3151 426 39 0 0 chr3 124213287 124213339 -93823819 + (TG)n Simple_repeat Simple_repeat 1 52 0 421 278 35 97 chr3 124213518 124213777 -93823381 - MIR SINE MIR -14 248 6 186 43 0 0 chr3 124214187 124214210 -93822948 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2013 91 0 36 chr3 124214214 124214488 -93822670 - AluSg SINE Alu -24 286 23 387 340 136 49 chr3 124214920 124215104 -93822054 + L2 LINE L2 2849 3016 -297 1551 180 0 50 chr3 124215104 124215421 -93821737 - AluJb SINE Alu -11 301 1 387 340 136 49 chr3 124215421 124215662 -93821496 + L2 LINE L2 3016 3311 -2 194 319 0 6 chr3 124215946 124216083 -93821075 - MIR SINE MIR -12 250 50 827 194 15 51 chr3 124216263 124216393 -93820765 + MER5A DNA MER1_type 1 123 -66 2295 120 0 0 chr3 124216393 124216702 -93820456 - AluSx SINE Alu -3 309 1 827 194 15 51 chr3 124216702 124216767 -93820391 + MER5A DNA MER1_type 123 189 0 414 278 0 9 chr3 124216890 124216998 -93820160 + MER81 DNA DNA 3 109 -5 1210 221 159 45 chr3 124217008 124217256 -93819902 - MLT1D LTR MaLR -15 490 272 2095 113 3 0 chr3 124217256 124217585 -93819573 - AluSp SINE Alu 0 330 1 1210 221 159 45 chr3 124217585 124217775 -93819383 - MLT1D LTR MaLR -233 272 1 274 220 0 17 chr3 124217803 124217862 -93819296 + MER81 DNA DNA 50 107 -7 413 330 107 5 chr3 124218706 124218912 -93818246 + MIR SINE MIR 34 260 -2 511 348 67 24 chr3 124219092 124219505 -93817653 - L2 LINE L2 -228 3044 2611 423 253 16 48 chr3 124219527 124219713 -93817445 - LTR33 LTR ERVL -40 481 302 482 231 58 0 chr3 124219731 124219852 -93817306 - LTR16A1 LTR ERVL -2 455 328 289 236 217 0 chr3 124219917 124220047 -93817111 + MIR SINE MIR 32 192 -62 2988 120 5 0 chr3 124220386 124220818 -93816340 - MER57B LTR ERV1 0 434 1 202 167 37 37 chr3 124221330 124221438 -93815720 + GA-rich Low_complexity Low_complexity 5 112 0 332 313 10 0 chr3 124222197 124222293 -93814865 + L2 LINE L2 3215 3311 -2 495 70 0 0 chr3 124222595 124222666 -93814492 + Alu SINE Alu 233 303 -9 228 149 0 0 chr3 124223732 124223779 -93813379 + (T)n Simple_repeat Simple_repeat 1 47 0 5012 27 0 0 chr3 124223794 124224382 -93812776 - L1PA4 LINE L1 0 6155 5568 943 267 85 64 chr3 124224410 124224631 -93812527 - L2 LINE L2 -154 3159 2944 1552 193 0 95 chr3 124224631 124225030 -93812128 - MLT1A1 LTR MaLR 0 365 5 943 267 85 64 chr3 124225030 124225340 -93811818 - L2 LINE L2 -369 2944 2597 429 324 130 14 chr3 124226044 124226260 -93810898 - MIR SINE MIR 0 262 22 478 141 13 0 chr3 124226671 124226749 -93810409 - MADE1 DNA Mariner -1 79 1 424 294 55 61 chr3 124226815 124226978 -93810180 + MER5A DNA MER1_type 3 164 -25 383 215 13 0 chr3 124226978 124227057 -93810101 + MER63 DNA MER1_type 1 706 -130 387 0 0 0 chr3 124227952 124227995 -93809163 + (CA)n Simple_repeat Simple_repeat 2 44 0 334 327 83 12 chr3 124228213 124228381 -93808777 - L3b LINE CR1 -184 1399 1220 2061 133 0 20 chr3 124228572 124228874 -93808284 - AluSq SINE Alu -17 296 1 7554 32 0 2 chr3 124228945 124230142 -93807016 - L1PA4 LINE L1 -1 6154 4959 678 51 0 2 chr3 124230142 124230239 -93806919 + L1P LINE L1 4509 4604 -1542 1191 187 128 19 chr3 124230380 124230701 -93806457 - MER119 DNA MER1_type -51 532 177 503 200 33 8 chr3 124230818 124230938 -93806220 + L1MC1 LINE L1 6211 6333 0 208 240 27 40 chr3 124231217 124231292 -93805866 + CT-rich Low_complexity Low_complexity 1 74 0 302 312 32 56 chr3 124231292 124231417 -93805741 - L2 LINE L2 0 3272 3151 180 305 12 49 chr3 124231432 124231514 -93805644 - L2 LINE L2 0 3272 3194 229 241 130 0 chr3 124232073 124232127 -93805031 - L2 LINE L2 -75 3197 3137 600 147 141 25 chr3 124232416 124232614 -93804544 - MER33 DNA MER1_type 0 324 104 5297 69 49 0 chr3 124232693 124233393 -93803765 + L1PA8 LINE L1 5438 6171 -1 342 214 14 0 chr3 124233405 124233475 -93803683 - MER33 DNA MER1_type -248 76 6 463 324 99 55 chr3 124233629 124233942 -93803216 - L2 LINE L2 -238 3034 2736 189 107 0 0 chr3 124233942 124233970 -93803188 + (TA)n Simple_repeat Simple_repeat 1 28 0 463 324 99 55 chr3 124233970 124234388 -93802770 - L2 LINE L2 -536 2736 2250 612 251 116 29 chr3 124234554 124234761 -93802397 - MIR SINE MIR 0 262 38 182 344 54 0 chr3 124234895 124234988 -93802170 + L2 LINE L2 2799 2896 -418 701 307 55 43 chr3 124235022 124235459 -93801699 + LTR16A LTR ERVL 16 450 0 457 277 66 0 chr3 124235459 124235625 -93801533 + HERV16 LTR ERVL 1 177 -4819 1730 306 65 36 chr3 124235737 124236573 -93800585 + HERV16 LTR ERVL 423 1233 -3763 1779 166 3 57 chr3 124236573 124236692 -93800466 + AluJo SINE Alu 1 125 -187 269 82 20 0 chr3 124236692 124236741 -93800417 + (CAAAA)n Simple_repeat Simple_repeat 3 52 0 1779 166 3 57 chr3 124236741 124236935 -93800223 + AluJo SINE Alu 125 297 -15 1730 306 65 36 chr3 124236935 124237721 -93799437 + HERV16 LTR ERVL 1233 2182 -2814 546 273 55 16 chr3 124237880 124238063 -93799095 + HERV16 LTR ERVL 2441 2630 -2366 1245 328 15 15 chr3 124238090 124238483 -93798675 + HERV16 LTR ERVL 2699 3091 -1905 375 307 50 20 chr3 124238489 124238691 -93798467 + HERV16 LTR ERVL 3346 3553 -2211 1140 335 88 44 chr3 124239086 124240499 -93796659 + HERV16 LTR ERVL 3812 5287 -367 721 326 58 20 chr3 124240712 124241111 -93796047 + LTR16A LTR ERVL 16 429 -21 234 279 15 15 chr3 124241987 124242055 -93795103 - MIR3 SINE MIR -138 70 3 1383 197 7 86 chr3 124242442 124242695 -93794463 - MLT2C1 LTR ERVL -1 396 187 1870 136 0 58 chr3 124242695 124243025 -93794133 + AluSx SINE Alu 1 311 -1 1383 197 7 86 chr3 124243025 124243188 -93793970 - MLT2C1 LTR ERVL -210 187 13 921 223 0 0 chr3 124243210 124243385 -93793773 + AluJb SINE Alu 137 311 -1 891 289 107 63 chr3 124243582 124244364 -93792794 + L2 LINE L2 2485 3312 -1 279 0 0 0 chr3 124245191 124245222 -93791936 + (TG)n Simple_repeat Simple_repeat 2 32 0 1917 180 14 38 chr3 124245222 124245449 -93791709 - MSTB LTR MaLR -7 421 205 1654 197 0 29 chr3 124245449 124245758 -93791400 - AluJb SINE Alu -12 300 1 1917 180 14 38 chr3 124245758 124245955 -93791203 - MSTB LTR MaLR -223 205 5 6970 59 6 0 chr3 124246331 124247567 -93789591 - L1PA7 LINE L1 0 6154 4915 1967 73 3 104 chr3 124247569 124247926 -93789232 + L1PA7 LINE L1 4603 4923 -1223 275 254 0 0 chr3 124248096 124248155 -93789003 - L2 LINE L2 0 3272 3214 316 235 235 0 chr3 124250871 124250973 -93786185 - L2 LINE L2 0 3313 3188 194 105 26 0 chr3 124251270 124251308 -93785850 + A-rich Low_complexity Low_complexity 3 41 0 1851 125 0 0 chr3 124251760 124252016 -93785142 - AluSq SINE Alu -56 257 2 459 330 51 17 chr3 124254269 124254505 -93782653 - MIR SINE MIR 0 262 20 9952 209 70 74 chr3 124255387 124255693 -93781465 - L1MC3 LINE L1 -16 8049 7743 279 0 0 0 chr3 124255693 124255724 -93781434 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9952 209 70 74 chr3 124255724 124255974 -93781184 - L1MC3 LINE L1 -322 7743 7493 249 273 10 30 chr3 124255974 124256073 -93781085 - MLT1F1 LTR MaLR -435 132 36 9952 209 70 74 chr3 124256073 124261179 -93775979 - L1MC3 LINE L1 -572 7493 2366 1924 115 66 11 chr3 124261179 124261465 -93775693 + AluSx SINE Alu 1 302 -10 9952 209 70 74 chr3 124261465 124263637 -93773521 - L1MC3 LINE L1 -5699 2366 147 4200 112 43 0 chr3 124263637 124264263 -93772895 + MER39B LTR ERV1 1 653 0 9952 209 70 74 chr3 124264263 124264375 -93772783 - L1MC3 LINE L1 -7918 147 36 854 102 44 0 chr3 124264464 124264601 -93772557 + L1MA3 LINE L1 6163 6305 0 558 271 42 31 chr3 124264761 124264953 -93772205 - L2 LINE L2 0 3313 3120 4639 50 2 7 chr3 124264955 124265555 -93771603 - L1PA4 LINE L1 -937 5209 4613 * 6384 34 0 3 chr3 124265543 124266351 -93770807 + L1PA4 LINE L1 5213 6018 -137 362 369 68 23 chr3 124267000 124267398 -93769760 + L2 LINE L2 1959 2374 -940 487 298 36 61 chr3 124267964 124268243 -93768915 + LTR16C LTR ERVL 211 482 -9 1283 188 5 9 chr3 124268341 124268565 -93768593 + MLT1C LTR MaLR 245 467 0 793 299 115 33 chr3 124269295 124270087 -93767071 + L1ME4a LINE L1 5258 6114 -7 225 370 0 0 chr3 124270758 124270831 -93766327 + MLT1K LTR MaLR 147 219 -369 2544 10 0 0 chr3 124271004 124271301 -93765857 - L1PA2 LINE L1 -601 5554 5258 5358 19 0 0 chr3 124271301 124271913 -93765245 + L1PA2 LINE L1 5540 6155 0 3095 173 31 7 chr3 124271936 124272485 -93764673 - MER68 LTR ERV1 0 562 1 558 292 27 66 chr3 124272547 124272804 -93764354 - LTR16C LTR ERVL -244 247 1 475 293 49 89 chr3 124272815 124273163 -93763995 + MLT1K LTR MaLR 255 588 0 537 189 15 15 chr3 124273350 124273482 -93763676 + MER58 DNA MER1_type 45 176 -2244 652 205 0 13 chr3 124273483 124273634 -93763524 + MER58 DNA MER1_type 2270 2418 -2 180 0 0 0 chr3 124274871 124274891 -93762267 + (CA)n Simple_repeat Simple_repeat 2 21 0 * 252 0 0 0 chr3 124274890 124274918 -93762240 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 378 0 0 0 chr3 124274917 124274959 -93762199 + (TA)n Simple_repeat Simple_repeat 1 42 0 427 39 64 0 chr3 124275036 124275114 -93762044 + (TA)n Simple_repeat Simple_repeat 2 84 0 201 167 0 0 chr3 124275114 124275150 -93762008 - MIR SINE MIR -144 118 83 422 167 12 0 chr3 124275150 124275234 -93761924 + (TA)n Simple_repeat Simple_repeat 2 86 0 438 323 111 14 chr3 124275234 124275602 -93761556 - L2 LINE L2 -1092 2222 1819 1969 189 6 9 chr3 124276587 124276931 -93760227 + MER7A DNA MER2_type 1 341 -5 212 162 0 0 chr3 124276970 124277007 -93760151 + (TATG)n Simple_repeat Simple_repeat 4 40 0 461 189 0 0 chr3 124277198 124277272 -93759886 + AluJb SINE Alu 181 254 -58 427 135 40 0 chr3 124278543 124278617 -93758541 + MER58B DNA MER1_type 240 316 -25 2990 111 2 7 chr3 124278619 124279051 -93758107 - MER57B LTR ERV1 -4 430 1 241 296 0 0 chr3 124279194 124279248 -93757910 - L3 LINE CR1 -9 1568 1515 302 327 177 43 chr3 124280544 124280844 -93756314 + L3 LINE CR1 1237 1576 -1 573 285 151 86 chr3 124281106 124281672 -93755486 - L2 LINE L2 -4 3309 2697 1831 142 29 29 chr3 124281672 124281981 -93755177 + AluJo SINE Alu 4 312 0 573 285 151 86 chr3 124281981 124282112 -93755046 - L2 LINE L2 -616 2697 2576 297 51 0 0 chr3 124282250 124282289 -93754869 + (TG)n Simple_repeat Simple_repeat 2 40 0 26 0 0 0 chr3 124282428 124282454 -93754704 + AT_rich Low_complexity Low_complexity 1 26 0 273 300 0 0 chr3 124282977 124283037 -93754121 + L2 LINE L2 3213 3272 0 420 75 30 0 chr3 124283135 124283202 -93753956 + L1ME1 LINE L1 5759 5827 -339 4435 174 20 37 chr3 124283207 124284124 -93753034 + L1MB3 LINE L1 5276 6176 -7 866 184 85 52 chr3 124284146 124284437 -93752721 + L1MB8 LINE L1 5824 6102 -72 296 294 131 40 chr3 124284585 124284767 -93752391 - MIR SINE MIR -51 211 16 814 242 86 37 chr3 124286137 124286616 -93750542 - MLT1E LTR MaLR -2 591 21 493 275 160 52 chr3 124287138 124287407 -93749751 + L3 LINE CR1 1265 1562 -15 24 0 0 0 chr3 124287469 124287493 -93749665 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr3 124290389 124290418 -93746740 + AT_rich Low_complexity Low_complexity 1 29 0 234 62 0 0 chr3 124291452 124291484 -93745674 + (CA)n Simple_repeat Simple_repeat 2 33 0 227 299 30 0 chr3 124293228 124293295 -93743863 - L3 LINE CR1 0 1577 1509 450 0 0 0 chr3 124294502 124294552 -93742606 + (CA)n Simple_repeat Simple_repeat 1 50 0 249 335 144 30 chr3 124294563 124294730 -93742428 - MIR3 SINE MIR -21 187 2 327 300 110 51 chr3 124296120 124296357 -93740801 - HAL1 LINE L1 -14 2493 2243 314 160 32 11 chr3 124296462 124296556 -93740602 + (TCTA)n Simple_repeat Simple_repeat 1 96 0 261 291 8 60 chr3 124297486 124297552 -93739606 + L2 LINE L2 3193 3252 -61 738 238 38 16 chr3 124297552 124297737 -93739421 + MER5A DNA MER1_type 1 189 0 261 291 8 60 chr3 124297737 124297787 -93739371 + L2 LINE L2 3252 3303 -10 183 253 76 63 chr3 124300633 124300712 -93736446 + L2 LINE L2 3234 3313 0 543 232 55 30 chr3 124301818 124302011 -93735147 + MLT1J2 LTR MaLR 2 206 -203 314 358 23 37 chr3 124303650 124303868 -93733290 + MLT1I LTR MaLR 75 289 -120 1398 223 29 74 chr3 124304722 124304911 -93732247 + LTR40b LTR ERVL 1 197 -265 2228 127 34 8 chr3 124304911 124305266 -93731892 + THE1B LTR MaLR 1 364 0 10185 109 31 43 chr3 124305266 124306864 -93730294 + THE1B-int LTR MaLR 1 1580 0 2295 132 28 3 chr3 124306864 124307219 -93729939 + THE1B LTR MaLR 1 364 0 1398 223 29 74 chr3 124307219 124307511 -93729647 + LTR40b LTR ERVL 194 462 0 222 217 159 14 chr3 124307648 124307717 -93729441 + L2 LINE L2 3194 3272 0 358 243 0 0 chr3 124309584 124309654 -93727504 - L2 LINE L2 0 3272 3203 330 26 0 0 chr3 124310129 124310168 -93726990 + (TG)n Simple_repeat Simple_repeat 2 40 0 268 324 185 32 chr3 124310247 124310593 -93726565 - L2 LINE L2 -706 2608 2210 558 272 146 0 chr3 124310648 124310806 -93726352 - MER5A DNA MER1_type 0 189 9 309 314 71 50 chr3 124310931 124311214 -93725944 - L2 LINE L2 -1245 2069 1781 2277 185 62 12 chr3 124311348 124311829 -93725329 + MLT1D LTR MaLR 1 505 0 1597 151 164 26 chr3 124311862 124312253 -93724905 - MER39 LTR ERV1 -3 704 260 232 260 150 39 chr3 124312335 124312462 -93724696 + MIR SINE MIR 76 216 -46 196 359 42 84 chr3 124313930 124314072 -93723086 - L2 LINE L2 -94 3178 3043 1824 171 86 3 chr3 124315456 124315818 -93721340 - MSTA LTR MaLR 0 428 37 1821 152 25 0 chr3 124315818 124316141 -93721017 + MST-int LTR MaLR 135 465 -1186 260 108 0 0 chr3 124316144 124316181 -93720977 - MSTA LTR MaLR -391 37 1 7754 165 44 3 chr3 124316181 124317599 -93719559 - MSTA-int LTR MaLR 0 1651 175 2014 146 79 8 chr3 124317609 124317987 -93719171 - MSTA LTR MaLR -21 407 3 406 312 7 43 chr3 124318025 124318166 -93718992 - MIR SINE MIR -57 151 16 197 363 18 44 chr3 124319080 124319193 -93717965 + MIR SINE MIR 22 131 -77 491 245 71 39 chr3 124319361 124319516 -93717642 + MER63A DNA MER1_type 50 209 -1 1839 142 3 46 chr3 124320039 124320364 -93716794 + AluSx SINE Alu 1 311 -1 1866 156 6 83 chr3 124320958 124321457 -93715701 + MER89 LTR ERV1 1 559 0 441 0 0 0 chr3 124321513 124321562 -93715596 + (CA)n Simple_repeat Simple_repeat 2 50 0 2095 152 0 0 chr3 124321772 124322081 -93715077 + AluSx SINE Alu 1 309 -3 600 297 130 34 chr3 124323177 124323585 -93713573 - MLT1J2 LTR MaLR 0 450 4 17424 184 26 20 chr3 124324222 124325112 -93712046 - L1PA13 LINE L1 -949 5848 4965 2738 3 0 3 chr3 124325112 124325412 -93711746 - AluY SINE Alu -12 299 1 17424 184 26 20 chr3 124325412 124330324 -93706834 - L1PA13 LINE L1 -1832 4965 15 224 220 0 0 chr3 124330350 124330400 -93706758 - L2 LINE L2 -1 3312 3263 219 103 73 29 chr3 124330604 124330672 -93706486 + (TA)n Simple_repeat Simple_repeat 2 72 0 21 36 0 0 chr3 124331165 124331193 -93705965 + AT_rich Low_complexity Low_complexity 1 28 0 794 301 228 35 chr3 124331210 124331898 -93705260 + L3 LINE CR1 684 1504 -73 2021 142 7 0 chr3 124332006 124332302 -93704856 + AluSx SINE Alu 1 298 -14 660 255 87 14 chr3 124332454 124332760 -93704398 - L1MC4 LINE L1 -145 7897 7437 910 194 30 30 chr3 124332768 124332969 -93704189 - MER3 DNA MER1_type 0 209 9 431 252 0 47 chr3 124332983 124333110 -93704048 - L1MC4 LINE L1 -508 7534 7414 340 97 32 0 chr3 124333276 124333338 -93703820 + (TA)n Simple_repeat Simple_repeat 2 65 0 342 0 0 0 chr3 124333338 124333376 -93703782 + (GA)n Simple_repeat Simple_repeat 2 39 0 584 264 11 29 chr3 124334076 124334250 -93702908 + MIR SINE MIR 76 246 -16 219 393 41 7 chr3 124334329 124334474 -93702684 - MIR3 SINE MIR -4 204 55 221 243 86 14 chr3 124334529 124334599 -93702559 - L2 LINE L2 -17 3296 3222 188 300 62 25 chr3 124335523 124335603 -93701555 - L2 LINE L2 0 3272 3190 254 325 6 141 chr3 124335736 124335899 -93701259 - L2 LINE L2 -94 3178 3038 14110 133 27 21 chr3 124336262 124338666 -93698492 - Tigger1 DNA MER2_type 0 2418 1 316 208 188 45 chr3 124338823 124338977 -93698181 - L1MC/D LINE L1 -2182 5626 5451 251 261 43 48 chr3 124339165 124339395 -93697763 - L1MC/D LINE L1 -1517 4629 4401 208 161 32 0 chr3 124339495 124339557 -93697601 + (TA)n Simple_repeat Simple_repeat 2 65 0 780 264 81 19 chr3 124339642 124340265 -93696893 - HAL1 LINE L1 -551 1956 1203 452 275 158 18 chr3 124340465 124340687 -93696471 + MIR SINE MIR 9 261 -1 1614 170 0 55 chr3 124342240 124342551 -93694607 - AluJb SINE Alu -18 294 1 355 247 0 0 chr3 124343130 124343203 -93693955 - MIR SINE MIR -10 252 180 213 279 148 8 chr3 124343506 124343628 -93693530 - MIR SINE MIR -19 243 105 2841 117 27 0 chr3 124343632 124344044 -93693114 + MSTC LTR MaLR 2 424 -4 25 0 0 0 chr3 124344957 124344982 -93692176 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr3 124345549 124345572 -93691586 + AT_rich Low_complexity Low_complexity 1 23 0 420 290 77 71 chr3 124345634 124345972 -93691186 - L1ME4a LINE L1 -182 5939 5600 357 286 21 50 chr3 124346055 124346195 -93690963 - MLT1K LTR MaLR -15 573 438 507 246 32 0 chr3 124346200 124346326 -93690832 - MIR SINE MIR 0 262 133 477 318 105 43 chr3 124346327 124346698 -93690460 - MLT1K LTR MaLR -162 426 33 313 268 28 78 chr3 124348505 124348647 -93688511 - L2 LINE L2 -43 3270 3136 288 274 0 0 chr3 124348767 124348829 -93688329 - L2 LINE L2 -14 3299 3238 630 339 116 34 chr3 124349096 124349937 -93687221 - L2 LINE L2 -2 3311 2412 192 303 95 59 chr3 124350163 124350384 -93686774 + L2 LINE L2 2829 3057 -215 524 361 6 6 chr3 124350493 124350676 -93686482 + MER5A DNA MER1_type 7 189 0 189 265 196 10 chr3 124350676 124350773 -93686385 + L2 LINE L2 3153 3268 -4 819 302 182 9 chr3 124352913 124353504 -93683654 - L2 LINE L2 0 3313 2623 1573 123 8 4 chr3 124353504 124353739 -93683419 - MLT1A1 LTR MaLR 0 365 130 2041 265 251 16 chr3 124353758 124354683 -93682475 - L2 LINE L2 -1558 1756 615 307 304 124 37 chr3 124356308 124356469 -93680689 + MER5A DNA MER1_type 9 183 -6 340 278 83 0 chr3 124356555 124356663 -93680495 - L2 LINE L2 0 3313 3197 197 321 138 18 chr3 124356730 124356839 -93680319 - L2 LINE L2 -4 3309 3188 312 271 139 16 chr3 124357807 124357936 -93679222 + MIR SINE MIR 94 238 -24 260 289 83 56 chr3 124358558 124358738 -93678420 - MLT1J2 LTR MaLR -8 442 258 630 250 35 0 chr3 124358773 124358917 -93678241 - MLT1J1 LTR MaLR -297 149 1 207 203 290 0 chr3 124359134 124359203 -93677955 + MER5A DNA MER1_type 21 109 -80 310 267 0 59 chr3 124359893 124359994 -93677164 - L2 LINE L2 -2 3270 3176 481 305 113 14 chr3 124361102 124361315 -93675843 + MIR SINE MIR 15 248 -14 3953 121 2 2 chr3 124362168 124362762 -93674396 - L1PA13 LINE L1 -19 6144 5551 183 80 0 0 chr3 124362763 124362788 -93674370 + (T)n Simple_repeat Simple_repeat 1 25 0 1273 30 0 18 chr3 124362804 124362969 -93674189 - L1PA5 LINE L1 0 6154 5993 1747 158 55 14 chr3 124362969 124363092 -93674066 - L1PA13 LINE L1 -597 5564 5447 2328 114 27 29 chr3 124363092 124363468 -93673690 + THE1C LTR MaLR 1 375 0 1747 158 55 14 chr3 124363468 124363776 -93673382 - L1PA13 LINE L1 -714 5447 5118 234 330 46 18 chr3 124364339 124364448 -93672710 - L2 LINE L2 -5 3267 3156 2598 76 3 0 chr3 124364640 124364982 -93672176 + L1PA7 LINE L1 5809 6151 -3 802 249 19 58 chr3 124364985 124365246 -93671912 - MIR SINE MIR 0 262 12 2750 198 12 2 chr3 124365699 124366214 -93670944 - MLT2B1 LTR ERVL 0 520 1 2215 118 3 0 chr3 124416444 124416750 -93620408 + AluSp SINE Alu 1 307 -6 709 326 0 0 chr3 124416768 124416989 -93620169 + MIR SINE MIR 12 232 -30 211 239 0 0 chr3 124417423 124417469 -93619689 + T-rich Low_complexity Low_complexity 1 46 0 2188 70 0 61 chr3 124417907 124418219 -93618939 + AluY SINE Alu 1 293 -18 7945 158 20 48 chr3 124418244 124418675 -93618483 + L1MA5A LINE L1 3535 3977 -2320 2305 113 0 0 chr3 124418675 124418985 -93618173 + AluSg SINE Alu 1 310 0 7945 158 20 48 chr3 124418985 124419583 -93617575 + L1MA5A LINE L1 3977 4590 -1707 2054 140 45 36 chr3 124419583 124419940 -93617218 + THE1B LTR MaLR 5 364 0 7945 158 20 48 chr3 124419940 124420969 -93616189 + L1MA5A LINE L1 4590 5482 -815 289 0 0 47 chr3 124420969 124421012 -93616146 + (CAA)n Simple_repeat Simple_repeat 3 43 0 7945 158 20 48 chr3 124421012 124421803 -93615355 + L1MA5A LINE L1 5482 6294 -3 2226 196 42 24 chr3 124422830 124422941 -93614217 + L1MB8 LINE L1 5602 5710 -468 2111 150 10 39 chr3 124422941 124423327 -93613831 - THE1C LTR MaLR 0 375 1 2226 196 42 24 chr3 124423327 124423766 -93613392 + L1MB8 LINE L1 5710 6162 -16 898 270 60 8 chr3 124423822 124424070 -93613088 + MIR SINE MIR 2 262 0 196 310 87 43 chr3 124425433 124425617 -93611541 - L2 LINE L2 -701 2613 2422 379 322 101 29 chr3 124425875 124426083 -93611075 + MIR SINE MIR 11 233 -29 409 264 96 28 chr3 124426276 124426454 -93610704 - MIR3 SINE MIR -3 205 16 236 277 43 53 chr3 124427219 124427313 -93609845 + L2 LINE L2 3167 3259 -13 2060 121 7 3 chr3 124427445 124427742 -93609416 + AluSx SINE Alu 1 298 -14 646 275 15 18 chr3 124427885 124428111 -93609047 - MIR SINE MIR 0 262 37 1511 194 3 14 chr3 124428654 124428943 -93608215 + AluJb SINE Alu 1 286 -26 306 73 0 0 chr3 124428945 124428986 -93608172 + (CA)n Simple_repeat Simple_repeat 1 41 0 1016 189 63 15 chr3 124429989 124430195 -93606963 + AluJb SINE Alu 85 300 -12 324 256 7 117 chr3 124430195 124430332 -93606826 + MER5A DNA MER1_type 68 189 0 4071 125 12 62 chr3 124432186 124432913 -93604245 + LTR8 LTR ERV1 1 691 0 741 256 36 52 chr3 124433044 124433294 -93603864 - MIR SINE MIR -10 252 7 237 237 26 26 chr3 124433744 124433820 -93603338 + HsTC2 DNA Tc2 4 79 -1819 3324 235 96 27 chr3 124434070 124434108 -93603050 + L1MC4 LINE L1 6771 6805 -1237 477 0 0 0 chr3 124434108 124434161 -93602997 + (CA)n Simple_repeat Simple_repeat 2 54 0 3324 235 96 27 chr3 124434161 124435309 -93601849 + L1MC4 LINE L1 6805 8039 -3 546 199 46 8 chr3 124436622 124436753 -93600405 + L1MC4 LINE L1 7200 7335 -707 336 318 39 23 chr3 124436914 124437043 -93600115 - L2 LINE L2 -6 3307 3177 246 194 57 121 chr3 124437403 124437527 -93599631 + MIR SINE MIR 101 216 -46 509 273 36 0 chr3 124437562 124437701 -93599457 - MIR SINE MIR 0 262 119 742 294 30 9 chr3 124438933 124439164 -93597994 - MIR SINE MIR -26 236 1 561 254 0 30 chr3 124440310 124440444 -93596714 + L2 LINE L2 3183 3312 -1 327 297 36 36 chr3 124440732 124440843 -93596315 - L2 LINE L2 0 3313 3203 259 307 164 21 chr3 124441170 124441310 -93595848 + MIR SINE MIR 23 182 -80 181 316 59 66 chr3 124441523 124441675 -93595483 + MER5A DNA MER1_type 11 161 -28 537 216 65 62 chr3 124442802 124443093 -93594065 + MLT1H1 LTR MaLR 224 546 -9 2081 208 20 46 chr3 124443224 124443567 -93593591 - MER74A LTR ERVL -70 488 161 1528 204 30 38 chr3 124443567 124443939 -93593219 + MLT1A2 LTR MaLR 4 372 -2 2081 208 20 46 chr3 124443939 124444096 -93593062 - MER74A LTR ERVL -397 161 1 270 246 0 0 chr3 124444281 124444342 -93592816 + MLT1-int LTR MaLR 424 484 -887 367 240 0 10 chr3 124445416 124445520 -93591638 + MLT1J LTR MaLR 1 103 -439 356 238 107 48 chr3 124445733 124445853 -93591305 + MLT1H1 LTR MaLR 378 512 -43 768 256 108 5 chr3 124445853 124446056 -93591102 + MER58A DNA MER1_type 1 224 0 356 238 107 48 chr3 124446056 124446103 -93591055 + MLT1H1 LTR MaLR 512 555 0 256 317 21 7 chr3 124446153 124446295 -93590863 + GA-rich Low_complexity Low_complexity 4 147 0 560 267 61 88 chr3 124446526 124446934 -93590224 + MLT1J LTR MaLR 113 509 -2 1608 259 90 68 chr3 124447392 124447850 -93589308 - MER21B LTR ERV1 -79 784 301 2366 103 0 0 chr3 124447850 124448152 -93589006 + AluSq SINE Alu 1 302 -11 1608 259 90 68 chr3 124448152 124448460 -93588698 - MER21B LTR ERV1 -562 301 1 2590 84 26 0 chr3 124448583 124448929 -93588229 + THE1A LTR MaLR 1 355 0 1057 117 56 61 chr3 124449049 124449262 -93587896 - THE1B LTR MaLR -35 329 118 2145 131 3 23 chr3 124449382 124449725 -93587433 + MER1B DNA MER1_type 2 337 0 348 127 0 0 chr3 124450222 124450277 -93586881 + (CA)n Simple_repeat Simple_repeat 1 55 0 247 288 43 64 chr3 124453336 124453569 -93583589 + MLT1J LTR MaLR 110 337 -174 711 227 0 0 chr3 124453741 124453869 -93583289 - FLAM_A SINE Alu -5 128 1 211 324 88 10 chr3 124454173 124454275 -93582883 + L3 LINE CR1 279 388 -1189 289 309 0 12 chr3 124454298 124454379 -93582779 - L2 LINE L2 -2 3270 3191 193 317 237 46 chr3 124454767 124455795 -93581363 - L2 LINE L2 -546 2768 1544 682 304 56 77 chr3 124456209 124456640 -93580518 + L3 LINE CR1 430 851 -726 5889 145 11 5 chr3 124456765 124458357 -93578801 - L1PB1 LINE L1 0 6151 4549 1842 157 50 10 chr3 124458361 124458744 -93578414 - MER63B DNA MER1_type -37 399 2 207 0 0 0 chr3 124458778 124458801 -93578357 + (CA)n Simple_repeat Simple_repeat 2 24 0 30 0 0 0 chr3 124458830 124458860 -93578298 + AT_rich Low_complexity Low_complexity 1 30 0 418 322 120 47 chr3 124458915 124459257 -93577901 + L3 LINE CR1 1079 1445 -132 2051 164 70 24 chr3 124459791 124460206 -93576952 - Tigger2a DNA MER2_type 0 434 1 232 363 0 0 chr3 124461279 124461359 -93575799 + CT-rich Low_complexity Low_complexity 3 82 0 3172 242 84 5 chr3 124461412 124462368 -93574790 + MER69B DNA AcHobo 1 1031 -195 4309 113 7 10 chr3 124462368 124463077 -93574081 - L1PA10 LINE L1 -1241 4905 4199 5940 89 24 20 chr3 124463078 124463649 -93573509 + L1PA10 LINE L1 4904 5471 -697 2356 90 0 0 chr3 124463649 124463948 -93573210 + AluY SINE Alu 1 299 -12 5940 89 24 20 chr3 124463948 124464633 -93572525 + L1PA10 LINE L1 5471 6168 0 271 253 0 27 chr3 124464749 124464824 -93572334 + MER69B DNA AcHobo 1154 1226 0 24 67 0 0 chr3 124464847 124464892 -93572266 + AT_rich Low_complexity Low_complexity 1 45 0 397 343 125 58 chr3 124465631 124466048 -93571110 - L2 LINE L2 -10 3262 2818 333 343 17 44 chr3 124466088 124466269 -93570889 + MER5A DNA MER1_type 7 182 -7 419 364 68 38 chr3 124466287 124466760 -93570398 - L2 LINE L2 -559 2755 2269 1442 213 39 74 chr3 124468159 124468360 -93568798 + MLT1C LTR MaLR 1 208 -259 2027 159 0 3 chr3 124468360 124468668 -93568490 + AluSx SINE Alu 1 307 -5 1442 213 39 74 chr3 124468668 124468950 -93568208 + MLT1C LTR MaLR 208 467 0 1251 204 88 55 chr3 124469378 124469830 -93567328 + MLT1C LTR MaLR 1 467 0 1347 152 4 86 chr3 124469872 124470175 -93566983 + AluJo SINE Alu 43 312 0 25 0 0 0 chr3 124470581 124470606 -93566552 + AT_rich Low_complexity Low_complexity 1 25 0 335 350 49 17 chr3 124470697 124470974 -93566184 + L3 LINE CR1 1042 1369 -208 499 261 87 0 chr3 124471087 124471239 -93565919 + MIR SINE MIR 39 206 -56 475 272 68 7 chr3 124472227 124472374 -93564784 - MIR SINE MIR -38 224 69 264 203 26 26 chr3 124473288 124473441 -93563717 + GA-rich Low_complexity Low_complexity 1 153 0 195 129 0 0 chr3 124473501 124473532 -93563626 + (GA)n Simple_repeat Simple_repeat 1 31 0 248 326 10 10 chr3 124473543 124473641 -93563517 + GA-rich Low_complexity Low_complexity 3 100 0 216 0 0 0 chr3 124475168 124475192 -93561966 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 240 111 0 0 chr3 124477075 124477111 -93560047 + (T)n Simple_repeat Simple_repeat 1 36 0 304 222 97 0 chr3 124477870 124477942 -93559216 + MIR SINE MIR 70 148 -60 732 349 108 44 chr3 124478106 124479306 -93557852 + L2 LINE L2 1472 2747 -567 258 184 0 0 chr3 124480850 124480899 -93556259 + L2 LINE L2 3265 3313 0 437 266 9 0 chr3 124481226 124481339 -93555819 + MIR SINE MIR 47 160 -102 2031 134 17 0 chr3 124481581 124481879 -93555279 - AluSx SINE Alu -9 303 1 386 130 0 13 chr3 124483148 124483225 -93553933 + (GA)n Simple_repeat Simple_repeat 1 76 0 1775 166 21 7 chr3 124484455 124484764 -93552394 + AluJo SINE Alu 1 312 0 22 0 0 0 chr3 124486098 124486120 -93551038 + AT_rich Low_complexity Low_complexity 1 22 0 936 153 38 67 chr3 124486357 124486566 -93550592 + MER105 DNA DNA 1 203 -1 328 323 73 8 chr3 124486742 124486866 -93550292 + MIR3 SINE MIR 54 185 -23 1077 329 49 70 chr3 124487350 124488438 -93548720 + L2 LINE L2 1943 3005 -308 436 183 46 0 chr3 124490850 124490981 -93546177 + CT-rich Low_complexity Low_complexity 2 138 0 864 146 23 0 chr3 124490996 124491126 -93546032 - FLAM_C SINE Alu 0 133 1 315 349 11 11 chr3 124491296 124491471 -93545687 + (TA)n Simple_repeat Simple_repeat 1 175 0 297 0 0 0 chr3 124491472 124491505 -93545653 + (CA)n Simple_repeat Simple_repeat 1 33 0 385 297 21 62 chr3 124492294 124492439 -93544719 - L2 LINE L2 -1 3271 3133 241 206 206 22 chr3 124492645 124492737 -93544421 + MIR SINE MIR 154 262 0 244 219 0 0 chr3 124493463 124493504 -93543654 + L2 LINE L2 2586 2626 -688 827 248 100 58 chr3 124493510 124493869 -93543289 + L2 LINE L2 2936 3309 -4 1637 140 23 92 chr3 124496955 124497347 -93539811 + MLT1A1 LTR MaLR 1 365 0 295 40 20 20 chr3 124497681 124497731 -93539427 + (CAAAAA)n Simple_repeat Simple_repeat 5 54 0 312 324 178 43 chr3 124498417 124499024 -93538134 - L2 LINE L2 -841 2473 1757 1264 216 101 27 chr3 124499024 124499362 -93537796 - MLT1A1 LTR MaLR -2 363 1 312 324 178 43 chr3 124499362 124499455 -93537703 - L2 LINE L2 -1557 1757 1678 768 206 0 0 chr3 124499656 124499787 -93537371 + FLAM_A SINE Alu 1 131 -2 210 71 0 0 chr3 124499792 124499820 -93537338 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 1598 176 42 26 chr3 124500808 124501115 -93536043 + AluJo SINE Alu 1 312 0 1609 179 9 61 chr3 124502318 124502647 -93534511 - AluJo SINE Alu 0 312 1 2189 129 0 7 chr3 124503119 124503428 -93533730 + AluSx SINE Alu 1 307 -5 213 242 81 16 chr3 124503573 124503635 -93533523 - MIR3 SINE MIR -3 205 140 226 345 73 36 chr3 124506160 124506325 -93530833 + MER5A DNA MER1_type 19 189 0 384 298 65 0 chr3 124507249 124507373 -93529785 - L2 LINE L2 0 3272 3141 712 143 32 24 chr3 124507524 124507650 -93529508 - FLAM_C SINE Alu -16 127 1 21 0 0 0 chr3 124509391 124509412 -93527746 + AT_rich Low_complexity Low_complexity 1 21 0 301 243 40 0 chr3 124510237 124510311 -93526847 - MIR3 SINE MIR -43 165 89 222 244 35 47 chr3 124510523 124510609 -93526549 - MER5A DNA MER1_type -79 110 26 207 0 0 0 chr3 124511267 124511290 -93525868 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2367 63 3 0 chr3 124511293 124511579 -93525579 - AluY SINE Alu -23 288 2 582 208 58 71 chr3 124513745 124513899 -93523259 + MIR SINE MIR 49 200 -62 205 162 0 27 chr3 124513939 124513976 -93523182 + MIR SINE MIR 199 234 -28 550 355 21 0 chr3 124514214 124514403 -93522755 - MIR SINE MIR -46 216 24 387 0 0 0 chr3 124515782 124515825 -93521333 + (TG)n Simple_repeat Simple_repeat 1 43 0 827 279 65 16 chr3 124516321 124516568 -93520590 - MIR SINE MIR -2 260 2 220 344 99 15 chr3 124516595 124516726 -93520432 + MIR SINE MIR 63 204 -58 343 323 85 28 chr3 124516914 124517162 -93519996 - L2 LINE L2 -12 3301 3040 1735 156 4 0 chr3 124518218 124518456 -93518702 - AluSp SINE Alu -14 299 61 267 299 47 19 chr3 124518612 124518719 -93518439 - L2 LINE L2 -225 3047 2938 260 281 50 50 chr3 124519132 124519253 -93517905 - MIR SINE MIR -56 206 86 1958 137 13 42 chr3 124519522 124519829 -93517329 - AluSx SINE Alu -14 298 1 202 241 17 17 chr3 124519919 124519977 -93517181 + (TATATG)n Simple_repeat Simple_repeat 6 63 0 261 271 17 0 chr3 124520018 124520077 -93517081 + L2 LINE L2 3213 3272 0 383 246 104 7 chr3 124520081 124520255 -93516903 + MIR SINE MIR 53 249 -13 207 152 0 0 chr3 124521251 124521297 -93515861 + CT-rich Low_complexity Low_complexity 2 47 0 324 0 0 0 chr3 124521298 124521334 -93515824 + (CA)n Simple_repeat Simple_repeat 2 37 0 399 324 54 7 chr3 124522285 124522433 -93514725 - MER5A DNA MER1_type -19 170 16 1380 213 66 0 chr3 124522662 124522982 -93514176 - MER58B DNA MER1_type 0 341 1 207 184 26 0 chr3 124523261 124523299 -93513859 - L2 LINE L2 -16 3297 3259 348 103 0 0 chr3 124523595 124523653 -93513505 + (TC)n Simple_repeat Simple_repeat 1 58 0 362 268 0 0 chr3 124526766 124526848 -93510310 + MIR SINE MIR 58 139 -123 585 312 0 11 chr3 124527158 124527344 -93509814 - MER5A DNA MER1_type -3 186 3 181 167 37 0 chr3 124529315 124529369 -93507789 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 384 217 0 11 chr3 124531412 124531504 -93505654 - MER117 DNA MER1_type -79 118 28 776 40 0 10 chr3 124531698 124531799 -93505359 + (GGAA)n Simple_repeat Simple_repeat 4 103 0 2170 157 3 29 chr3 124532693 124532909 -93504249 - MLT1A1 LTR MaLR 0 365 162 2279 118 3 6 chr3 124532909 124533222 -93503936 - AluSx SINE Alu 0 312 1 2170 157 3 29 chr3 124533222 124533380 -93503778 - MLT1A1 LTR MaLR -203 162 1 302 279 81 0 chr3 124533385 124533471 -93503687 - L2 LINE L2 -8 3264 3172 1926 61 0 0 chr3 124535044 124535307 -93501851 + AluY SINE Alu 69 331 0 306 271 8 39 chr3 124535865 124535994 -93501164 + CT-rich Low_complexity Low_complexity 6 130 0 544 326 27 8 chr3 124536525 124536820 -93500338 + LTR16C LTR ERVL 191 457 0 431 335 89 10 chr3 124538011 124538214 -93498944 - MIR SINE MIR -25 237 19 2144 112 3 3 chr3 124538283 124538577 -93498581 + AluSq SINE Alu 1 294 -19 377 269 62 46 chr3 124538590 124538720 -93498438 - MIR SINE MIR -51 211 80 243 250 17 17 chr3 124539551 124539611 -93497547 + L2 LINE L2 3209 3268 -4 205 280 0 40 chr3 124540583 124540633 -93496525 + L2 LINE L2 3248 3295 -18 1446 168 0 29 chr3 124541089 124541333 -93495825 + AluJb SINE Alu 68 304 -8 207 0 0 0 chr3 124541335 124541358 -93495800 + (CA)n Simple_repeat Simple_repeat 2 24 0 441 250 45 0 chr3 124541685 124541797 -93495361 - L2 LINE L2 -4 3309 3193 192 111 0 0 chr3 124542225 124542261 -93494897 + (T)n Simple_repeat Simple_repeat 1 36 0 2693 100 2 2 chr3 124542263 124542673 -93494485 - L1HS LINE L1 -2 6153 5744 24 0 0 0 chr3 124542945 124542969 -93494189 + AT_rich Low_complexity Low_complexity 1 24 0 23 68 0 0 chr3 124543221 124543265 -93493893 + AT_rich Low_complexity Low_complexity 1 44 0 307 314 0 66 chr3 124544412 124544549 -93492609 + MIR3 SINE MIR 34 161 -47 414 154 10 29 chr3 124544945 124545049 -93492109 + CT-rich Low_complexity Low_complexity 2 103 0 194 91 30 0 chr3 124545492 124545525 -93491633 + GA-rich Low_complexity Low_complexity 1 34 0 1659 199 7 0 chr3 124547349 124547635 -93489523 - AluJb SINE Alu -24 288 1 2277 120 10 0 chr3 124547745 124548054 -93489104 + AluSx SINE Alu 1 312 0 338 239 0 14 chr3 124548144 124548215 -93488943 + L2 LINE L2 3237 3306 -7 234 254 0 0 chr3 124548759 124548814 -93488344 + (CTG)n Simple_repeat Simple_repeat 3 57 0 26 50 0 0 chr3 124550692 124550732 -93486426 + AT_rich Low_complexity Low_complexity 1 40 0 219 222 0 32 chr3 124550847 124550910 -93486248 + (TTTA)n Simple_repeat Simple_repeat 1 61 0 200 141 42 42 chr3 124552307 124552378 -93484780 + CT-rich Low_complexity Low_complexity 1 71 0 1904 150 13 7 chr3 124552445 124552752 -93484406 + AluJb SINE Alu 3 311 -1 438 314 65 35 chr3 124553775 124553944 -93483214 + MIR3 SINE MIR 17 190 -18 506 316 18 40 chr3 124553954 124554182 -93482976 - MIR SINE MIR 0 262 40 2103 114 25 0 chr3 124554814 124555095 -93482063 - AluSx SINE Alu -24 288 1 195 42 0 0 chr3 124555390 124555414 -93481744 + (CG)n Simple_repeat Simple_repeat 2 25 0 * 369 0 0 0 chr3 124555413 124555454 -93481704 + (CA)n Simple_repeat Simple_repeat 1 41 0 214 364 34 0 chr3 124557428 124557516 -93479642 - L2 LINE L2 -483 2831 2741 650 268 49 44 chr3 124558226 124558431 -93478727 + MER63A DNA MER1_type 1 206 -4 1910 122 14 21 chr3 124560264 124560585 -93476573 - AluSx SINE Alu 0 319 1 21 0 0 0 chr3 124560587 124560608 -93476550 + AT_rich Low_complexity Low_complexity 1 21 0 597 326 84 35 chr3 124561099 124561660 -93475498 + L2 LINE L2 2718 3306 -7 211 254 9 91 chr3 124562218 124562328 -93474830 + MIR3 SINE MIR 15 115 -93 419 288 189 5 chr3 124562712 124562903 -93474255 + MIR SINE MIR 20 245 -17 2529 77 0 0 chr3 124563010 124563321 -93473837 - AluY SINE Alu 0 311 1 196 343 140 39 chr3 124563602 124563809 -93473349 + MIR SINE MIR 21 248 -14 189 0 0 0 chr3 124565754 124565775 -93471383 + (TTA)n Simple_repeat Simple_repeat 2 22 0 186 43 0 0 chr3 124566112 124566135 -93471023 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 646 258 55 11 chr3 124566771 124566953 -93470205 - MIR SINE MIR -10 252 63 616 238 168 19 chr3 124567722 124567936 -93469222 - MIR SINE MIR -14 248 3 * 2090 264 62 38 chr3 124567936 124568704 -93468454 + L2 LINE L2 1801 2587 -727 848 260 64 110 chr3 124568704 124569079 -93468079 + L2 LINE L2 2769 3117 -196 1830 134 10 31 chr3 124569079 124569405 -93467753 - AluSq SINE Alu 0 320 1 848 260 64 110 chr3 124569405 124569593 -93467565 + L2 LINE L2 3117 3312 -1 258 32 0 0 chr3 124570246 124570277 -93466881 + (TG)n Simple_repeat Simple_repeat 2 32 0 457 47 115 0 chr3 124570282 124570430 -93466728 + (TA)n Simple_repeat Simple_repeat 2 166 0 570 40 99 0 chr3 124570444 124570596 -93466562 + (TA)n Simple_repeat Simple_repeat 2 168 0 29 0 0 0 chr3 124572017 124572046 -93465112 + AT_rich Low_complexity Low_complexity 1 29 0 2159 217 90 8 chr3 124572333 124572854 -93464304 + MER90 LTR ERV1 3 566 -9 1913 200 71 66 chr3 124574794 124575343 -93461815 - MER92C LTR ERV1 -2 552 1 535 230 252 47 chr3 124575584 124575858 -93461300 + L3 LINE CR1 1245 1574 -3 431 298 23 15 chr3 124577051 124577182 -93459976 + MIR3 SINE MIR 74 205 -3 340 261 99 28 chr3 124579141 124579283 -93457875 - MIR SINE MIR -4 258 107 264 207 17 17 chr3 124579297 124579355 -93457803 + MIR SINE MIR 197 254 -8 703 229 102 78 chr3 124579373 124579557 -93457601 - MIR SINE MIR -1 261 68 1801 160 37 3 chr3 124579557 124579857 -93457301 - AluJb SINE Alu -2 310 1 703 229 102 78 chr3 124579857 124579916 -93457242 - MIR SINE MIR -194 68 12 318 106 0 0 chr3 124580257 124580304 -93456854 + (CA)n Simple_repeat Simple_repeat 2 48 0 291 324 0 0 chr3 124580333 124580404 -93456754 - L2 LINE L2 -42 3271 3201 979 266 139 22 chr3 124580700 124581109 -93456049 - LTR16A1 LTR ERVL 0 457 1 216 0 0 0 chr3 124581207 124581231 -93455927 + (T)n Simple_repeat Simple_repeat 1 24 0 370 205 8 120 chr3 124581542 124581659 -93455499 + MER102b DNA MER1_type 232 335 -6 207 139 0 0 chr3 124582096 124582132 -93455026 + (TA)n Simple_repeat Simple_repeat 1 36 0 302 245 330 0 chr3 124582175 124582269 -93454889 - MER119 DNA MER1_type -5 578 454 306 310 35 0 chr3 124582297 124582384 -93454774 - MER119 DNA MER1_type -491 92 3 355 324 81 23 chr3 124583276 124583449 -93453709 + MIR3 SINE MIR 20 202 -6 22 0 0 0 chr3 124584391 124584413 -93452745 + AT_rich Low_complexity Low_complexity 1 22 0 405 295 33 49 chr3 124584846 124585029 -93452129 - MIR SINE MIR -50 212 33 22 0 0 0 chr3 124585434 124585456 -93451702 + AT_rich Low_complexity Low_complexity 1 22 0 206 320 40 0 chr3 124586374 124586449 -93450709 + L2 LINE L2 3236 3313 0 231 36 0 0 chr3 124587140 124587168 -93449990 + (CA)n Simple_repeat Simple_repeat 1 28 0 991 181 36 19 chr3 124587175 124587462 -93449696 - MLT1A1 LTR MaLR -9 584 1 534 258 136 0 chr3 124588193 124588348 -93448810 + MIR SINE MIR 83 258 -4 459 0 0 0 chr3 124588984 124589035 -93448123 + (TA)n Simple_repeat Simple_repeat 2 52 0 198 0 0 0 chr3 124589036 124589058 -93448100 + (GA)n Simple_repeat Simple_repeat 2 23 0 373 353 0 0 chr3 124589285 124589387 -93447771 + MIR SINE MIR 45 146 -62 274 387 16 8 chr3 124589397 124589521 -93447637 - L2 LINE L2 0 3272 3148 203 280 0 0 chr3 124589520 124589570 -93447588 + MIR3 SINE MIR 153 202 -6 * 2084 129 10 0 chr3 124589572 124589875 -93447283 - AluSq SINE Alu -7 306 1 355 297 43 36 chr3 124589880 124590018 -93447140 + L2 LINE L2 3175 3313 0 297 325 127 12 chr3 124590984 124591150 -93446008 + MARNA DNA Mariner 262 446 -140 2929 195 31 6 chr3 124591540 124592083 -93445075 + MER68 LTR ERV1 6 562 0 243 284 16 79 chr3 124592404 124592531 -93444627 - MLT1J LTR MaLR -161 350 232 21 0 0 0 chr3 124593310 124593331 -93443827 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 124593647 124593668 -93443490 + AT_rich Low_complexity Low_complexity 1 21 0 1299 185 15 27 chr3 124593934 124594193 -93442965 - MLT1B LTR MaLR -132 258 3 735 112 0 9 chr3 124594208 124594315 -93442843 + AluSq SINE Alu 83 188 -125 343 151 0 0 chr3 124594316 124594398 -93442760 + AluS SINE Alu 232 313 0 702 188 0 16 chr3 124594514 124594642 -93442516 + FLAM_A SINE Alu 1 126 -7 304 335 59 24 chr3 124596389 124596559 -93440599 + L2 LINE L2 2343 2518 -796 249 136 45 0 chr3 124597934 124597978 -93439180 - MER96B DNA MER1_type? -182 235 190 369 194 14 14 chr3 124597991 124598063 -93439095 - Tigger5 DNA MER2_type 0 2323 2252 315 222 0 0 chr3 124598034 124598088 -93439070 - Tigger5 DNA MER2_type -2269 54 1 * 741 166 17 50 chr3 124598337 124598422 -93438736 - MER96B DNA MER1_type? -242 175 89 2020 121 13 13 chr3 124598422 124598720 -93438438 - AluSx SINE Alu -14 298 1 741 166 17 50 chr3 124598720 124598815 -93438343 - MER96B DNA MER1_type? -328 89 1 1402 209 22 38 chr3 124599024 124599392 -93437766 + MLT1A1 LTR MaLR 1 362 -3 2136 105 70 6 chr3 124599634 124599976 -93437182 + L1PA13 LINE L1 5800 6163 0 244 275 125 50 chr3 124600627 124600747 -93436411 + L2 LINE L2 3144 3272 0 666 287 98 64 chr3 124600971 124601379 -93435779 + L2 LINE L2 2873 3294 -19 527 284 82 42 chr3 124601592 124601732 -93435426 + MLT1K LTR MaLR 126 259 -329 279 0 0 0 chr3 124601732 124601763 -93435395 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 527 284 82 42 chr3 124601763 124602027 -93435131 + MLT1K LTR MaLR 259 580 -8 8035 116 61 15 chr3 124602248 124604422 -93432736 - L1PA10 LINE L1 0 6483 4198 * 31415 81 8 10 chr3 124604421 124609131 -93428027 - L1PA6 LINE L1 0 6154 1472 2318 96 20 0 chr3 124609131 124609432 -93427726 - AluY SINE Alu -4 307 1 31415 81 8 10 chr3 124609432 124610891 -93426267 - L1PA6 LINE L1 -4682 1472 11 15072 186 28 53 chr3 124610900 124615048 -93422110 - L1PA10 LINE L1 -2250 4211 25 257 247 0 11 chr3 124615494 124615587 -93421571 + (TA)n Simple_repeat Simple_repeat 1 92 0 2298 109 0 0 chr3 124615783 124616085 -93421073 + AluY SINE Alu 1 302 -9 1835 170 3 28 chr3 124616372 124616690 -93420468 - AluJo SINE Alu -2 310 1 11359 60 9 11 chr3 124616841 124618260 -93418898 + HERV17 LTR ERV1 3162 4577 -4049 2507 102 10 8 chr3 124618254 124618711 -93418447 + HERV17 LTR ERV1 6809 7548 -1078 * 2469 58 0 0 chr3 124618701 124618993 -93418165 + HERV17 LTR ERV1 8335 8626 0 * 1296 103 0 11 chr3 124618993 124619178 -93417980 + LTR17 LTR ERV1 1 183 -597 6232 28 1 0 chr3 124619179 124619928 -93417230 - L1PA4 LINE L1 -2878 3268 2519 18438 39 3 0 chr3 124619929 124622808 -93414350 + L1PA4 LINE L1 3270 6154 -1 1070 73 13 20 chr3 124622808 124622959 -93414199 + LTR17 LTR ERV1 177 326 -454 1496 270 27 15 chr3 124622973 124623451 -93413707 + L1ME1 LINE L1 5650 6133 -33 247 250 0 12 chr3 124623474 124623558 -93413600 + (CATATA)n Simple_repeat Simple_repeat 2 84 0 31542 104 14 13 chr3 124623705 124629281 -93407877 + L1PA7 LINE L1 588 6152 -2 213 229 48 0 chr3 124629404 124629487 -93407671 + (TA)n Simple_repeat Simple_repeat 2 88 0 26 50 0 0 chr3 124630106 124630146 -93407012 + AT_rich Low_complexity Low_complexity 1 40 0 295 272 19 39 chr3 124630805 124630908 -93406250 + L2 LINE L2 2980 3080 -192 218 278 48 45 chr3 124631014 124631112 -93406046 + MIR SINE MIR 5 105 -103 319 211 263 0 chr3 124631246 124631341 -93405817 + L2 LINE L2 3153 3272 0 903 302 51 28 chr3 124631475 124631866 -93405292 + MLT1I LTR MaLR 10 409 0 214 125 0 0 chr3 124632022 124632054 -93405104 - MIR SINE MIR -111 151 120 403 367 50 68 chr3 124632453 124632731 -93404427 + L2 LINE L2 2987 3259 -13 417 20 0 0 chr3 124633959 124634009 -93403149 + (TG)n Simple_repeat Simple_repeat 1 50 0 228 314 277 0 chr3 124634457 124634645 -93402513 - MIR SINE MIR -14 248 9 2060 143 7 0 chr3 124634988 124635281 -93401877 + AluSx SINE Alu 1 295 -17 305 277 59 0 chr3 124635486 124635587 -93401571 - MIR SINE MIR 0 262 156 195 304 29 65 chr3 124636614 124636752 -93400406 + MIR SINE MIR 88 220 -42 607 267 7 0 chr3 124636765 124636900 -93400258 + MLT1H LTR MaLR 3 138 -411 959 162 6 24 chr3 124636907 124637074 -93400084 - L1PA15 LINE L1 -2 6163 6000 1173 178 0 56 chr3 124637223 124637437 -93399721 - AluJb SINE Alu -110 202 1 2293 105 0 0 chr3 124637583 124637877 -93399281 - AluSg SINE Alu -16 294 1 183 80 0 0 chr3 124638139 124638164 -93398994 + (TG)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr3 124639808 124639831 -93397327 + AT_rich Low_complexity Low_complexity 1 23 0 274 194 48 16 chr3 124640607 124640669 -93396489 + MLT1K LTR MaLR 183 246 -342 240 197 56 14 chr3 124641009 124641080 -93396078 + MLT1K LTR MaLR 511 584 -4 229 322 271 0 chr3 124642909 124643086 -93394072 + MIR SINE MIR 34 258 -4 448 205 41 33 chr3 124643516 124643638 -93393520 - L2 LINE L2 -2960 354 232 1099 248 17 33 chr3 124643638 124643984 -93393174 + MLT2D LTR ERVL 1 394 -20 226 211 39 0 chr3 124644097 124644149 -93393009 - L2 LINE L2 -3179 135 82 456 270 191 9 chr3 124644496 124644711 -93392447 - L2 LINE L2 -39 3274 3021 234 342 45 18 chr3 124645170 124645281 -93391877 - MER94 DNA DNA -16 118 5 240 119 0 0 chr3 124645694 124645736 -93391422 - MADE1 DNA Mariner 0 80 39 249 83 0 0 chr3 124645868 124645904 -93391254 - HSMAR1 DNA Mariner -1251 36 1 243 218 51 13 chr3 124645931 124646009 -93391149 + (TG)n Simple_repeat Simple_repeat 2 82 0 246 240 151 34 chr3 124646094 124646240 -93390918 - MIR SINE MIR -4 258 96 917 253 34 13 chr3 124646393 124646630 -93390528 - MIR SINE MIR 0 262 21 2104 216 104 16 chr3 124646636 124647050 -93390108 - L1MC4a LINE L1 -39 7769 7292 2022 160 19 45 chr3 124647050 124647186 -93389972 + MLT1A1 LTR MaLR 1 139 -226 2308 82 0 3 chr3 124647186 124647489 -93389669 - AluY SINE Alu -9 302 1 2022 160 19 45 chr3 124647489 124647727 -93389431 + MLT1A1 LTR MaLR 139 365 0 2104 216 104 16 chr3 124647727 124647868 -93389290 - L1MC4a LINE L1 -516 7292 7165 312 70 0 0 chr3 124648329 124648372 -93388786 + (TC)n Simple_repeat Simple_repeat 1 43 0 459 0 0 0 chr3 124648372 124648423 -93388735 + (TG)n Simple_repeat Simple_repeat 2 52 0 2007 95 0 11 chr3 124648920 124649193 -93387965 - AluSx SINE Alu 0 312 43 566 213 74 37 chr3 124650738 124650988 -93386170 + Charlie7 DNA MER1_type 1 2611 -1 222 280 0 0 chr3 124651673 124651723 -93385435 + MIR SINE MIR 92 141 -67 2380 86 0 0 chr3 124651735 124652027 -93385131 + AluSg SINE Alu 1 292 -18 226 293 40 0 chr3 124652027 124652102 -93385056 - MIR SINE MIR -172 90 13 682 282 151 44 chr3 124652221 124652595 -93384563 - L2 LINE L2 -7 3306 2879 1781 130 30 23 chr3 124652595 124652925 -93384233 + AluSc SINE Alu 1 309 0 682 282 151 44 chr3 124652925 124652982 -93384176 - L2 LINE L2 -434 2879 2829 280 309 79 7 chr3 124653196 124653335 -93383823 - LTR68 LTR ERV1 -580 160 12 652 315 136 3 chr3 124653345 124653675 -93383483 - L2 LINE L2 -592 2722 2349 881 287 117 8 chr3 124654128 124654681 -93382477 + MLT2F LTR ERVL 6 663 0 189 316 0 0 chr3 124655190 124655228 -93381930 - L2 LINE L2 -86 3186 3149 237 33 0 0 chr3 124655278 124655308 -93381850 + (TG)n Simple_repeat Simple_repeat 2 31 0 477 253 68 19 chr3 124655377 124655539 -93381619 - Charlie8 DNA MER1_type -2146 271 102 2376 84 0 0 chr3 124655560 124655858 -93381300 + AluSq SINE Alu 4 301 -12 22 56 0 0 chr3 124656080 124656116 -93381042 + AT_rich Low_complexity Low_complexity 1 36 0 289 232 40 10 chr3 124656556 124656655 -93380503 + (CGGG)n Simple_repeat Simple_repeat 4 105 0 267 177 13 25 chr3 124659069 124659148 -93378010 + (TA)n Simple_repeat Simple_repeat 1 78 0 1791 199 8 28 chr3 124659360 124659756 -93377402 - MLT1B LTR MaLR 0 390 3 232 352 8 40 chr3 124659833 124659958 -93377200 + MIR SINE MIR 20 140 -122 227 299 103 11 chr3 124660129 124660216 -93376942 + MIR SINE MIR 7 101 -161 749 152 60 7 chr3 124660219 124660468 -93376690 - MSTD LTR MaLR -54 342 1 250 337 11 0 chr3 124660495 124660584 -93376574 + MIR SINE MIR 120 209 -53 2105 114 14 0 chr3 124660594 124660884 -93376274 + AluSx SINE Alu 1 294 -18 290 317 19 10 chr3 124661337 124661441 -93375717 + L2 LINE L2 3168 3272 0 279 114 0 0 chr3 124661568 124661612 -93375546 + (TG)n Simple_repeat Simple_repeat 1 44 0 2082 175 15 24 chr3 124663647 124664189 -93372969 + pTR5 LTR ERV1 743 1279 -1159 1867 101 49 21 chr3 124664195 124664631 -93372527 + pTR5 LTR ERV1 82 714 0 2882 68 13 0 chr3 124665049 124665432 -93371726 + MLT2A1 LTR ERVL 1 388 -56 3472 56 2 7 chr3 124665749 124666199 -93370959 - LTR7 LTR ERV1 -2 448 1 2427 69 45 13 chr3 124666199 124666577 -93370581 - HERVH LTR ERV1 0 7713 7324 1377 111 18 5 chr3 124666577 124666794 -93370364 - HERVH LTR ERV1 -1894 5819 5600 3968 156 1 1 chr3 124666795 124667457 -93369701 - HERVH LTR ERV1 -2564 5149 4488 3210 111 0 4 chr3 124667459 124667955 -93369203 - HERVH LTR ERV1 -3720 3993 3500 824 129 27 0 chr3 124667954 124668101 -93369057 - HERVH LTR ERV1 -4423 3290 3140 * 19295 82 40 8 chr3 124668080 124670981 -93366177 - HERVH LTR ERV1 -4718 2995 1 3362 73 2 7 chr3 124670983 124671433 -93365725 - LTR7 LTR ERV1 -2 448 1 1576 179 86 57 chr3 124671917 124672393 -93364765 - LTR2B LTR ERV1 0 490 1 259 260 27 100 chr3 124672399 124672549 -93364609 + MER77 LTR ERV1 57 195 -410 2035 133 3 13 chr3 124672549 124672858 -93364300 + AluSc SINE Alu 1 306 -3 613 244 83 44 chr3 124673068 124673422 -93363736 + MER77 LTR ERV1 336 667 -23 2381 55 3 0 chr3 124673467 124673757 -93363401 - AluY SINE Alu 0 311 21 28 29 0 0 chr3 124674772 124674807 -93362351 + AT_rich Low_complexity Low_complexity 1 35 0 192 97 0 0 chr3 124674977 124675008 -93362150 + (TA)n Simple_repeat Simple_repeat 2 32 0 679 259 23 17 chr3 124676568 124676742 -93360416 - MIR3 SINE MIR -17 191 17 23 33 0 0 chr3 124677635 124677665 -93359493 + AT_rich Low_complexity Low_complexity 1 30 0 704 184 7 0 chr3 124680326 124680478 -93356680 + CT-rich Low_complexity Low_complexity 3 155 0 300 27 0 0 chr3 124682488 124682525 -93354633 + (TC)n Simple_repeat Simple_repeat 2 38 0 28 0 0 0 chr3 124682552 124682580 -93354578 + AT_rich Low_complexity Low_complexity 1 28 0 194 140 0 20 chr3 124683321 124683371 -93353787 + (CAAAAA)n Simple_repeat Simple_repeat 2 50 0 228 35 0 0 chr3 124683823 124683852 -93353306 + (TG)n Simple_repeat Simple_repeat 2 30 0 646 296 12 0 chr3 124684093 124684262 -93352896 - MIR SINE MIR -83 179 9 187 387 127 0 chr3 124684561 124684711 -93352447 - MIR3 SINE MIR -3 205 37 254 233 27 14 chr3 124685249 124685322 -93351836 + (CATATA)n Simple_repeat Simple_repeat 4 77 0 1595 186 68 0 chr3 124685449 124685772 -93351386 + MER7A DNA MER2_type 1 343 -3 1492 128 110 50 chr3 124687328 124687647 -93349511 + MER44D DNA MER2_type 1 608 -1 1351 308 31 23 chr3 124689260 124689737 -93347421 + L2 LINE L2 2833 3313 0 274 225 238 0 chr3 124690284 124690364 -93346794 - MIR SINE MIR -75 133 35 469 290 21 0 chr3 124690739 124690884 -93346274 + MIR SINE MIR 103 250 -12 193 29 59 0 chr3 124691000 124691034 -93346124 + (TA)n Simple_repeat Simple_repeat 1 36 0 288 0 0 0 chr3 124691057 124691089 -93346069 + (TA)n Simple_repeat Simple_repeat 1 32 0 2100 85 46 0 chr3 124691147 124691428 -93345730 + AluSx SINE Alu 1 294 -18 1925 98 65 7 chr3 124691430 124691706 -93345452 + AluSg SINE Alu 1 292 -18 256 316 53 21 chr3 124692900 124692995 -93344163 + L2 LINE L2 3171 3268 -4 203 245 0 0 chr3 124692998 124693047 -93344111 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 189 147 0 0 chr3 124693379 124693413 -93343745 + (TC)n Simple_repeat Simple_repeat 1 34 0 2293 110 10 0 chr3 124694574 124694926 -93342232 - AluSp SINE Alu 0 355 1 330 233 50 8 chr3 124695756 124695876 -93341282 + L1ME4a LINE L1 5997 6121 0 2217 85 0 56 chr3 124696678 124696997 -93340161 + AluSg SINE Alu 1 301 -9 552 199 13 26 chr3 124697992 124698143 -93339015 - L1MA4 LINE L1 -57 6243 6095 24 53 0 0 chr3 124698229 124698267 -93338891 + AT_rich Low_complexity Low_complexity 1 38 0 305 332 105 71 chr3 124698290 124698372 -93338786 + L2 LINE L2 2909 2987 -285 2319 83 30 3 chr3 124698372 124698672 -93338486 - AluY SINE Alu -3 308 1 305 332 105 71 chr3 124698672 124698941 -93338217 + L2 LINE L2 2987 3272 0 180 0 0 0 chr3 124699223 124699243 -93337915 + (T)n Simple_repeat Simple_repeat 1 20 0 200 35 35 0 chr3 124700602 124700631 -93336527 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 189 74 0 0 chr3 124708281 124708308 -93328850 + (TTA)n Simple_repeat Simple_repeat 1 27 0 1162 181 10 5 chr3 124709078 124709283 -93327875 - AluJb SINE Alu -41 271 66 310 285 172 59 chr3 124710005 124710144 -93327014 + MIR SINE MIR 2 124 -138 1904 164 24 0 chr3 124710144 124710436 -93326722 + 7SLRNA srpRNA srpRNA 11 309 -11 310 285 172 59 chr3 124710436 124710517 -93326641 + MIR SINE MIR 124 247 -15 872 79 0 8 chr3 124711472 124711599 -93325559 + (TTCC)n Simple_repeat Simple_repeat 3 128 0 338 321 99 31 chr3 124716273 124716435 -93320723 + MIR3 SINE MIR 30 202 -6 200 369 27 54 chr3 124716570 124716681 -93320477 + MIR SINE MIR 23 130 -78 199 333 21 69 chr3 124716813 124716957 -93320201 + MIR SINE MIR 6 142 -120 1998 142 3 3 chr3 124716961 124717256 -93319902 + AluSx SINE Alu 1 295 -17 202 245 56 126 chr3 124717283 124717426 -93319732 - L2 LINE L2 -782 2532 2400 530 304 68 14 chr3 124718751 124718971 -93318187 - MIR SINE MIR -23 239 8 220 271 99 77 chr3 124719127 124719348 -93317810 + MIR SINE MIR 10 235 -27 397 262 40 34 chr3 124719370 124719519 -93317639 + MIR SINE MIR 7 156 -106 420 207 54 18 chr3 124719569 124719680 -93317478 + MER97b DNA MER1_type? 44 158 -895 2183 125 29 35 chr3 124719759 124720136 -93317022 + THE1C LTR MaLR 1 375 0 1775 147 0 0 chr3 124720452 124720710 -93316448 + AluSx SINE Alu 45 302 -10 198 138 0 0 chr3 124721762 124721791 -93315367 + L2 LINE L2 3266 3294 -19 2165 123 7 0 chr3 124724706 124725006 -93312152 - AluSx SINE Alu -2 310 9 1960 115 10 21 chr3 124727006 124727329 -93309829 + AluSq SINE Alu 1 320 0 225 209 15 90 chr3 124728044 124728075 -93309083 - L2 LINE L2 -1 3312 3287 726 283 55 44 chr3 124728075 124728527 -93308631 + LTR16A1 LTR ERVL 1 457 0 225 209 15 90 chr3 124728527 124728562 -93308596 - L2 LINE L2 -26 3287 3251 210 308 55 82 chr3 124731480 124731626 -93305532 - L2 LINE L2 -4 3268 3127 925 225 142 20 chr3 124732388 124732641 -93304517 - MLT2B2 LTR ERVL -226 289 6 360 269 39 48 chr3 124732663 124732767 -93304391 - MER5C DNA MER1_type -221 103 1 23 33 0 0 chr3 124733626 124733656 -93303502 + AT_rich Low_complexity Low_complexity 1 30 0 1376 84 0 0 chr3 124735134 124735313 -93301845 + L1PA7 LINE L1 5965 6143 -11 1323 238 32 19 chr3 124735345 124735778 -93301380 + MER69 DNA AcHobo 1908 2346 -180 457 133 12 0 chr3 124737488 124737571 -93299587 + MER53 DNA DNA 2 85 -104 204 319 0 22 chr3 124738593 124738684 -93298474 + MIR SINE MIR 66 154 -108 486 230 46 20 chr3 124740454 124740606 -93296552 + MER103 DNA DNA 11 166 0 234 0 0 0 chr3 124740848 124740874 -93296284 + (TA)n Simple_repeat Simple_repeat 2 27 0 343 299 27 121 chr3 124741987 124742352 -93294806 - L1M2 LINE L1 -5763 1086 756 24 0 0 0 chr3 124742386 124742410 -93294748 + GC_rich Low_complexity Low_complexity 1 24 0 222 188 88 75 chr3 124742922 124743002 -93294156 - MIR3 SINE MIR -10 198 118 2103 116 10 3 chr3 124743045 124743347 -93293811 + AluSx SINE Alu 1 304 -8 404 316 106 64 chr3 124744144 124744502 -93292656 + L2 LINE L2 2139 2511 -803 652 272 93 95 chr3 124744604 124745182 -93291976 + L1M4 LINE L1 2644 3220 -2926 6074 102 9 2 chr3 124745192 124746320 -93290838 + L1PA13 LINE L1 5023 6162 -1 328 299 18 56 chr3 124747087 124747371 -93289787 + L1M4 LINE L1 3376 3648 -2498 256 332 81 36 chr3 124747386 124747609 -93289549 + L2 LINE L2 2624 2856 -458 345 311 115 0 chr3 124749438 124749560 -93287598 + MIR SINE MIR 117 252 -10 1837 192 37 6 chr3 124750038 124750392 -93286766 + MLT1A1 LTR MaLR 1 365 0 642 203 0 0 chr3 124751981 124752124 -93285034 + GA-rich Low_complexity Low_complexity 2 144 0 381 309 103 0 chr3 124752819 124752984 -93284174 + MIR SINE MIR 47 228 -34 264 339 16 58 chr3 124753012 124753133 -93284025 - L2 LINE L2 -3 3269 3154 207 0 0 0 chr3 124753771 124753794 -93283364 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 379 246 223 42 chr3 124757006 124757221 -93279937 - L2 LINE L2 -39 3274 3021 314 261 76 85 chr3 124758034 124758245 -93278913 - MER69 DNA AcHobo -439 787 579 1548 230 112 20 chr3 124758249 124758805 -93278353 - L1ME3A LINE L1 -9 6161 5555 548 255 81 0 chr3 124758806 124758955 -93278203 - MER69 DNA AcHobo -630 596 436 2344 94 0 0 chr3 124959364 124959663 -93077495 - AluSq SINE Alu -12 301 3 1563 238 62 23 chr3 124960198 124960631 -93076527 - LTR40c LTR ERVL -5 460 11 193 408 108 8 chr3 124960672 124960740 -93076418 + L2 LINE L2 3115 3175 -97 225 0 0 0 chr3 124960740 124960765 -93076393 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 193 408 108 8 chr3 124960765 124960816 -93076342 + L2 LINE L2 3175 3246 -26 344 232 10 0 chr3 124961012 124961111 -93076047 + (TA)n Simple_repeat Simple_repeat 2 101 0 662 176 64 80 chr3 124961714 124961901 -93075257 - MLT1E2 LTR MaLR -442 184 1 1796 143 13 50 chr3 124962494 124962795 -93074363 - AluJo SINE Alu -22 290 1 694 299 43 16 chr3 124962834 124963088 -93074070 + MIR SINE MIR 1 261 -1 286 262 126 19 chr3 124963159 124963262 -93073896 + L2 LINE L2 3159 3272 0 518 229 0 0 chr3 124964519 124964615 -93072543 - Tigger7 DNA MER2_type -3 2488 2393 * 1574 195 23 0 chr3 124964613 124964874 -93072284 - Tigger7 DNA MER2_type -2220 267 1 194 381 42 54 chr3 124964876 124965136 -93072022 - L2 LINE L2 -634 2680 2424 285 265 61 31 chr3 124965351 124965449 -93071709 + MIR3 SINE MIR 98 198 -10 397 335 76 13 chr3 124965648 124965872 -93071286 + L2 LINE L2 2392 2629 -685 2137 117 3 7 chr3 124965923 124966221 -93070937 + AluSp SINE Alu 1 297 -16 401 296 31 6 chr3 124966306 124966465 -93070693 - L1MC/D LINE L1 -2015 5793 5631 969 284 116 21 chr3 124966700 124967228 -93069930 - HAL1b LINE L1 -494 854 277 2535 66 0 0 chr3 124967693 124967994 -93069164 - AluY SINE Alu -10 301 1 376 347 119 23 chr3 124968792 124969160 -93067998 + L2 LINE L2 2611 3017 -255 641 292 40 5 chr3 124969204 124969406 -93067752 - MIR SINE MIR -26 236 28 1571 185 2 62 chr3 124969863 124970311 -93066847 - L1PA16 LINE L1 -78 6088 5668 2225 21 4 0 chr3 124971101 124971344 -93065814 + SVA Other Other 1142 1385 -1 315 123 23 17 chr3 124971347 124971377 -93065781 + L1P LINE L1 5291 5319 -836 2329 71 0 20 chr3 124971377 124971673 -93065485 + AluY SINE Alu 1 290 -21 315 123 23 17 chr3 124971673 124971724 -93065434 + L1P LINE L1 5319 5373 -782 2459 77 0 10 chr3 124971724 124972036 -93065122 + AluY SINE Alu 1 309 -2 2015 154 0 7 chr3 124972036 124972342 -93064816 + AluSg SINE Alu 1 304 -6 2369 100 6 3 chr3 124972344 124972655 -93064503 + AluSx SINE Alu 1 312 0 1484 155 23 42 chr3 124973103 124973412 -93063746 - AluJb SINE Alu -3 309 7 1280 154 47 53 chr3 124973507 124973806 -93063352 - AluJo SINE Alu -15 297 1 25979 225 11 7 chr3 124974192 124979369 -93057789 + HERV17 LTR ERV1 508 8626 0 440 192 40 20 chr3 124979575 124979674 -93057484 + LTR12 LTR ERV1 238 338 -376 480 196 39 72 chr3 124979708 124979861 -93057297 + pTR5 LTR ERV1 11 468 -246 2053 88 8 0 chr3 124979890 124980152 -93057006 + AluSq SINE Alu 31 294 -19 23 54 0 0 chr3 124981188 124981225 -93055933 + AT_rich Low_complexity Low_complexity 1 37 0 583 301 86 26 chr3 124982400 124982486 -93054672 + MLT1L LTR MaLR 166 245 -370 2908 3 0 0 chr3 124982486 124982794 -93054364 + AluYa5 SINE Alu 1 308 -3 583 301 86 26 chr3 124982794 124983046 -93054112 + MLT1L LTR MaLR 245 524 -91 14546 148 22 9 chr3 124984076 124984730 -93052428 + Tigger1 DNA MER2_type 1 645 -1773 2059 148 52 30 chr3 124984730 124985096 -93052062 - THE1C LTR MaLR 0 375 2 14546 148 22 9 chr3 124985096 124986827 -93050331 + Tigger1 DNA MER2_type 645 2418 0 1165 197 38 5 chr3 124986936 124987149 -93050009 - MLT1A1 LTR MaLR -2 363 144 6237 135 43 12 chr3 124987162 124988379 -93048779 - L1MA5 LINE L1 -4 7317 6063 4679 110 34 10 chr3 124988382 124988409 -93048749 - L1MA2 LINE L1 0 6304 6279 2553 116 8 8 chr3 124988409 124988764 -93048394 + THE1A LTR MaLR 1 355 0 4679 110 34 10 chr3 124988764 124989443 -93047715 - L1MA2 LINE L1 -25 6279 5581 6099 158 19 4 chr3 124989443 124990738 -93046420 - L1M1 LINE L1 -751 6814 5615 * 8991 143 29 16 chr3 124990735 124992199 -93044959 - L1M1 LINE L1 -5135 2430 948 7674 67 147 2 chr3 124992199 124993266 -93043892 + MER11B LTR ERVK 1 1222 -14 4353 186 57 13 chr3 124993358 124994253 -93042905 - L1M1 LINE L1 -6610 955 22 3558 176 16 10 chr3 124994262 124994951 -93042207 - L1MA5 LINE L1 -1087 6080 5388 321 163 0 0 chr3 124994942 124994991 -93042167 + L1 LINE L1 4637 4685 -1461 * 1939 175 18 18 chr3 124994990 124995328 -93041830 - L1MA5 LINE L1 -6822 346 9 1024 123 6 19 chr3 124995328 124995490 -93041668 - MLT1A1 LTR MaLR -205 160 1 475 255 213 0 chr3 124996418 124996559 -93040599 + MER5A DNA MER1_type 13 183 -6 2202 98 3 17 chr3 124996749 124997045 -93040113 - AluSx SINE Alu -10 302 11 2362 140 119 8 chr3 124997800 124998185 -93038973 + MSTA LTR MaLR 1 428 0 9987 135 22 36 chr3 124998188 124999786 -93037372 + MSTA-int LTR MaLR 4 1580 0 2217 131 150 11 chr3 124999787 125000160 -93036998 + MSTA LTR MaLR 2 426 -2 197 286 122 20 chr3 125000438 125000536 -93036622 - L2 LINE L2 -4 3268 3161 414 273 39 16 chr3 125000960 125001088 -93036070 + MER94 DNA DNA 4 134 0 1509 164 107 58 chr3 125001270 125001617 -93035541 + MLT1A1 LTR MaLR 1 364 -1 188 214 371 0 chr3 125002133 125002222 -93034936 - MIR SINE MIR -31 231 110 23 0 0 0 chr3 125004677 125004700 -93032458 + AT_rich Low_complexity Low_complexity 1 23 0 2332 90 30 6 chr3 125004700 125005034 -93032124 - L1MA3 LINE L1 0 6305 5964 2278 147 27 6 chr3 125005034 125005692 -93031466 + L1M1 LINE L1 3354 4025 -3540 1624 172 0 60 chr3 125005982 125006148 -93031010 - AluJb SINE Alu -28 284 142 2088 126 0 22 chr3 125006148 125006465 -93030693 - AluSx SINE Alu -2 310 1 1624 172 0 60 chr3 125006465 125006600 -93030558 - AluJb SINE Alu -170 142 1 1127 235 28 0 chr3 125006716 125006933 -93030225 + MER58A DNA MER1_type 1 223 -1 1766 169 40 63 chr3 125009052 125009449 -93027709 + MLT1B LTR MaLR 1 388 -2 188 345 9 55 chr3 125010345 125010455 -93026703 + MIR3 SINE MIR 95 199 -9 241 262 0 0 chr3 125010788 125010849 -93026309 - MLT1K LTR MaLR -13 575 515 1020 226 31 18 chr3 125010874 125011186 -93025972 - MER33 DNA MER1_type -17 307 1 377 181 35 238 chr3 125011380 125011607 -93025551 - MLT1K LTR MaLR -341 247 67 503 308 24 43 chr3 125012117 125012328 -93024830 + MIR SINE MIR 4 210 -52 293 243 44 59 chr3 125013289 125013425 -93023733 - MIR SINE MIR -56 206 73 373 258 86 11 chr3 125013723 125013816 -93023342 + L2 LINE L2 3191 3290 -23 24 67 0 0 chr3 125013822 125013867 -93023291 + AT_rich Low_complexity Low_complexity 1 45 0 180 302 159 54 chr3 125014452 125014803 -93022355 + L2 LINE L2 2580 2967 -347 496 269 106 24 chr3 125014876 125015084 -93022074 + L1ME LINE L1 5526 5750 -371 266 277 24 0 chr3 125015106 125015189 -93021969 + MER112 DNA MER1_type 1 85 -175 248 279 93 12 chr3 125015293 125015379 -93021779 + MER112 DNA MER1_type 167 259 -1 2114 104 0 3 chr3 125015488 125015775 -93021383 + AluSg SINE Alu 12 297 -13 1991 143 0 10 chr3 125016017 125016317 -93020841 + AluJb SINE Alu 1 297 -15 192 329 40 0 chr3 125016797 125016873 -93020285 - MER5B DNA MER1_type -35 143 65 203 358 134 28 chr3 125016913 125017092 -93020066 - L2 LINE L2 -557 2757 2560 217 200 238 0 chr3 125017439 125017519 -93019639 + MIR SINE MIR 151 249 -13 818 237 36 5 chr3 125018341 125018535 -93018623 + MIR SINE MIR 35 234 -28 781 263 72 0 chr3 125018696 125018932 -93018226 + MER102a DNA MER1_type 77 329 -1 366 257 188 7 chr3 125019191 125019335 -93017823 - MIR SINE MIR -47 215 46 26 0 0 0 chr3 125019658 125019684 -93017474 + AT_rich Low_complexity Low_complexity 1 26 0 611 290 54 0 chr3 125019816 125020002 -93017156 + MIR SINE MIR 60 255 -7 413 302 81 12 chr3 125020289 125020461 -93016697 - MIR SINE MIR 0 262 79 279 133 0 0 chr3 125020472 125020517 -93016641 + (TA)n Simple_repeat Simple_repeat 1 45 0 217 238 143 0 chr3 125020773 125020836 -93016322 + MIR SINE MIR 112 183 -79 248 360 102 7 chr3 125021077 125021224 -93015934 + MIR SINE MIR 92 252 -10 240 400 62 21 chr3 125021606 125021751 -93015407 + L2 LINE L2 3116 3266 -6 939 209 102 21 chr3 125022701 125023079 -93014079 + L1MD2 LINE L1 869 1293 -5250 * 1476 198 16 39 chr3 125023067 125023430 -93013728 + L1MB7 LINE L1 5812 6166 -18 793 229 139 0 chr3 125023477 125023722 -93013436 + L1MD2 LINE L1 1322 1600 -4940 * 1653 209 119 29 chr3 125023715 125024309 -93012849 + L1MD2 LINE L1 1842 2489 -4051 4746 217 66 30 chr3 125024319 125025550 -93011608 + L1MD2 LINE L1 3722 4908 -1845 189 0 0 0 chr3 125025550 125025571 -93011587 + (CA)n Simple_repeat Simple_repeat 2 22 0 4746 217 66 30 chr3 125025571 125026171 -93010987 + L1MD2 LINE L1 4908 5485 -1268 1900 152 27 39 chr3 125026171 125026579 -93010579 + L1MA3 LINE L1 5900 6302 -3 4746 217 66 30 chr3 125026579 125027246 -93009912 + L1MD2 LINE L1 5485 6496 -257 889 208 87 9 chr3 125027246 125027477 -93009681 + L1ME1 LINE L1 5916 6164 -2 23 54 0 0 chr3 125027598 125027635 -93009523 + AT_rich Low_complexity Low_complexity 1 37 0 1051 189 79 0 chr3 125027635 125027863 -93009295 + L1MD2 LINE L1 6495 6740 -13 344 306 50 0 chr3 125027941 125028062 -93009096 - L2 LINE L2 -10 3303 3177 26 0 0 0 chr3 125028169 125028195 -93008963 + AT_rich Low_complexity Low_complexity 1 26 0 21 71 0 0 chr3 125028279 125028321 -93008837 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr3 125029107 125029130 -93008028 + GC_rich Low_complexity Low_complexity 1 23 0 23 0 0 71 chr3 125029929 125029971 -93007187 + AT_rich Low_complexity Low_complexity 1 39 0 287 228 13 38 chr3 125031431 125031589 -93005569 + (TA)n Simple_repeat Simple_repeat 1 154 0 228 210 161 0 chr3 125033316 125033378 -93003780 + L2 LINE L2 3241 3312 -1 1607 228 39 32 chr3 125034546 125035007 -93002151 - LTR16B LTR ERVL 0 464 1 390 246 134 0 chr3 125035134 125035276 -93001882 - MIR SINE MIR -26 236 76 381 304 79 54 chr3 125035642 125035882 -93001276 - L2 LINE L2 0 3272 3027 337 298 139 13 chr3 125035965 125036123 -93001035 - MIR SINE MIR -18 244 67 490 290 49 44 chr3 125037192 125037375 -92999783 + MIR SINE MIR 17 200 -62 440 177 73 21 chr3 125037384 125037480 -92999678 - MER99 DNA DNA -1 827 727 23 33 0 0 chr3 125037758 125037788 -92999370 + AT_rich Low_complexity Low_complexity 1 30 0 421 193 11 11 chr3 125038215 125038303 -92998855 + MER99 DNA DNA 192 279 -549 * 794 214 45 17 chr3 125038272 125038543 -92998615 + MER99 DNA DNA 381 707 -121 231 354 112 75 chr3 125039026 125039464 -92997694 + L2 LINE L2 2807 3260 -12 674 171 109 22 chr3 125039788 125039997 -92997161 + AluJo SINE Alu 1 289 -23 494 72 54 9 chr3 125039998 125040109 -92997049 + GA-rich Low_complexity Low_complexity 1 116 0 293 280 56 19 chr3 125040169 125040276 -92996882 + MIR3 SINE MIR 92 202 -6 975 185 0 17 chr3 125041207 125041385 -92995773 + FRAM SINE Alu 1 175 -1 279 271 50 66 chr3 125041385 125041702 -92995456 + L1MEd LINE L1 945 1256 -4863 358 280 71 12 chr3 125041797 125041965 -92995193 + HAL1 LINE L1 1489 1644 -863 241 291 53 13 chr3 125042201 125042352 -92994806 + L1MEd LINE L1 1023 1179 -4940 42866 33 21 1 chr3 125042598 125048626 -92988532 + L1PA2 LINE L1 2 6153 -2 293 0 0 26 chr3 125048683 125048721 -92988437 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 25 0 0 0 chr3 125048939 125048964 -92988194 + AT_rich Low_complexity Low_complexity 1 25 0 400 320 26 16 chr3 125048987 125049181 -92987977 + L1MEd LINE L1 2409 2604 -3525 1364 306 58 13 chr3 125049240 125049691 -92987467 + L2 LINE L2 2842 3312 -1 508 326 138 0 chr3 125049856 125050080 -92987078 - MIR SINE MIR -7 255 1 354 289 97 50 chr3 125050184 125050526 -92986632 + L1MEd LINE L1 3461 3818 -2311 229 179 18 18 chr3 125050552 125050608 -92986550 - MER20 DNA MER1_type -22 197 142 1921 146 58 0 chr3 125050629 125050764 -92986394 - L1MA9 LINE L1 -5 6307 6181 180 0 0 0 chr3 125050764 125050784 -92986374 + (TG)n Simple_repeat Simple_repeat 1 20 0 1921 146 58 0 chr3 125050784 125051010 -92986148 - L1MA9 LINE L1 -131 6181 5925 1222 147 17 59 chr3 125051010 125051195 -92985963 - MLT1A1 LTR MaLR 0 365 191 2762 166 40 0 chr3 125051195 125051647 -92985511 + MER70A LTR ERVL 3 472 0 1222 147 17 59 chr3 125051647 125051699 -92985459 - MLT1A1 LTR MaLR -174 191 138 722 249 51 34 chr3 125051699 125051936 -92985222 - L1MC4 LINE L1 -169 7873 7633 916 42 84 0 chr3 125051941 125052060 -92985098 - MER85 DNA T2_type 0 139 11 1725 203 214 6 chr3 125052108 125052581 -92984577 - L1MC4 LINE L1 -527 7515 6945 21 36 0 0 chr3 125052692 125052720 -92984438 + AT_rich Low_complexity Low_complexity 1 28 0 213 94 0 0 chr3 125055389 125055421 -92981737 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 21 0 0 0 chr3 125055614 125055635 -92981523 + AT_rich Low_complexity Low_complexity 1 21 0 199 424 16 16 chr3 125056214 125056339 -92980819 + MIR3 SINE MIR 1 125 -83 434 243 10 10 chr3 125056341 125056444 -92980714 + MER94 DNA DNA 1 103 -31 300 351 54 16 chr3 125057562 125057747 -92979411 + MIR3 SINE MIR 6 197 -11 1914 227 65 5 chr3 125059022 125059590 -92977568 + L1MB7 LINE L1 4420 5021 -1125 1755 213 75 31 chr3 125059636 125060092 -92977066 + L1MB7 LINE L1 5624 6107 -77 2349 68 10 3 chr3 125060092 125060387 -92976771 - AluY SINE Alu -14 297 1 1755 213 75 31 chr3 125060387 125060451 -92976707 + L1MB7 LINE L1 6107 6167 -17 342 286 45 45 chr3 125061575 125061708 -92975450 + MIR SINE MIR 50 182 -80 210 191 0 0 chr3 125061825 125061867 -92975291 + (TA)n Simple_repeat Simple_repeat 1 42 0 439 278 102 45 chr3 125061871 125062047 -92975111 - MIR SINE MIR -68 194 9 970 340 99 34 chr3 125062223 125063215 -92973943 + L2 LINE L2 1492 2547 -767 197 305 84 21 chr3 125063310 125063405 -92973753 + L2 LINE L2 2971 3071 -201 267 79 0 0 chr3 125063584 125063622 -92973536 + (TA)n Simple_repeat Simple_repeat 1 38 0 315 167 0 0 chr3 125063649 125063715 -92973443 + (TA)n Simple_repeat Simple_repeat 1 66 0 273 263 0 21 chr3 125063721 125063816 -92973342 - L1MC4 LINE L1 -1336 6706 6614 2265 120 0 0 chr3 125064579 125064878 -92972280 + AluSx SINE Alu 1 299 -13 222 236 0 0 chr3 125066396 125066451 -92970707 + (TG)n Simple_repeat Simple_repeat 2 56 0 502 204 88 122 chr3 125066650 125066831 -92970327 + MER102a DNA MER1_type 155 329 -1 2458 248 58 20 chr3 125067190 125067648 -92969510 + L1ME1 LINE L1 2384 2823 -3323 2342 102 0 0 chr3 125067648 125067943 -92969215 + AluSx SINE Alu 1 295 -17 2458 248 58 20 chr3 125067943 125068420 -92968738 + L1ME1 LINE L1 2823 3354 -2792 3290 240 68 36 chr3 125068437 125070506 -92966652 + L1ME1 LINE L1 4021 6162 -4 312 325 50 84 chr3 125070519 125070983 -92966175 - LTR67 LTR ERVL -74 483 36 450 0 0 0 chr3 125072812 125072862 -92964296 + (CA)n Simple_repeat Simple_repeat 2 51 0 420 192 84 0 chr3 125073112 125073247 -92963911 - MIR SINE MIR -13 249 102 396 294 153 12 chr3 125073337 125073507 -92963651 + MIR SINE MIR 56 249 -13 26 0 0 0 chr3 125074091 125074117 -92963041 + AT_rich Low_complexity Low_complexity 1 26 0 297 51 0 0 chr3 125074546 125074585 -92962573 + (CA)n Simple_repeat Simple_repeat 2 40 0 215 231 0 0 chr3 125074801 125074840 -92962318 + polypurine Low_complexity Low_complexity 2 40 0 614 39 0 0 chr3 125075184 125075261 -92961897 + AluY SINE Alu 1 77 -233 1367 233 36 36 chr3 125075950 125076366 -92960792 - L1ME3A LINE L1 -14 6156 5741 236 197 121 45 chr3 125076360 125076426 -92960732 + L1ME LINE L1 5578 5648 -514 * 2419 52 0 23 chr3 125077038 125077343 -92959815 + AluY SINE Alu 1 298 -13 180 0 0 0 chr3 125077679 125077699 -92959459 + (A)n Simple_repeat Simple_repeat 1 20 0 246 311 95 68 chr3 125077973 125078156 -92959002 - MIR SINE MIR -56 206 16 345 121 15 15 chr3 125079021 125079087 -92958071 + L1ME3A LINE L1 5911 5976 -194 823 197 174 0 chr3 125079386 125079564 -92957594 + MER3 DNA MER1_type 1 209 0 256 293 0 13 chr3 125079926 125080001 -92957157 - MIR SINE MIR 0 262 189 1018 181 6 0 chr3 125080003 125080185 -92956973 + MER2 DNA MER2_type 8 190 -155 499 182 0 0 chr3 125080231 125080308 -92956850 + MER2 DNA MER2_type 269 345 0 4029 130 49 1 chr3 125080316 125080969 -92956189 - Tigger1 DNA MER2_type 0 2418 1735 5882 100 12 16 chr3 125081258 125082785 -92954373 - L1PB1 LINE L1 0 6151 4631 1398 111 65 0 chr3 125082785 125083001 -92954157 - Tigger1 DNA MER2_type -698 1720 1491 310 51 0 0 chr3 125083046 125083085 -92954073 - Tigger1 DNA MER2_type -1784 634 596 426 184 0 0 chr3 125083087 125083163 -92953995 - Tigger1 DNA MER2_type -935 1483 1408 3694 76 19 29 chr3 125083199 125083570 -92953588 + L1PB1 LINE L1 5426 5792 -359 426 39 0 0 chr3 125083570 125083622 -92953536 + (CA)n Simple_repeat Simple_repeat 2 53 0 3694 76 19 29 chr3 125083622 125083776 -92953382 + L1PB1 LINE L1 5792 5946 -205 354 171 65 0 chr3 125083775 125083866 -92953292 - L1 LINE L1 -1096 5050 4955 * 8641 133 15 33 chr3 125083866 125085297 -92951861 - Tigger1 DNA MER2_type -1011 1407 2 1628 199 114 40 chr3 125085301 125085743 -92951415 - MLT2B1 LTR ERVL -38 457 6 438 279 64 0 chr3 125085755 125085895 -92951263 - L1M4 LINE L1 -2658 3488 3340 2320 66 13 3 chr3 125088121 125088426 -92948732 + AluY SINE Alu 1 308 -3 510 312 27 4 chr3 125088509 125088712 -92948446 + L1ME LINE L1 5572 5768 -353 254 234 124 35 chr3 125088945 125089090 -92948068 - L1ME4a LINE L1 -23 6098 5941 1363 259 108 34 chr3 125090020 125090549 -92946609 + MER97a DNA MER1_type? 1 568 -326 449 190 66 22 chr3 125090690 125090854 -92946304 + MER97a DNA MER1_type? 784 894 0 295 354 133 32 chr3 125090860 125091363 -92945795 - L2 LINE L2 -898 2416 1863 622 272 40 12 chr3 125091457 125091630 -92945528 + MER5A DNA MER1_type 12 189 0 206 268 0 42 chr3 125091630 125091682 -92945476 + MIR3 SINE MIR 156 204 -4 209 283 0 33 chr3 125092346 125092406 -92944752 - MIR3 SINE MIR -15 193 136 215 225 0 50 chr3 125094310 125094390 -92942768 + A-rich Low_complexity Low_complexity 5 80 0 425 259 120 36 chr3 125094587 125094764 -92942394 - MIR SINE MIR -51 211 19 225 200 0 0 chr3 125095543 125095588 -92941570 + (TA)n Simple_repeat Simple_repeat 1 45 0 198 268 0 0 chr3 125095981 125096022 -92941136 + L2 LINE L2 3010 3050 -222 190 399 56 28 chr3 125097352 125097495 -92939663 - L2 LINE L2 -3 3269 3123 27 0 0 0 chr3 125097542 125097569 -92939589 + AT_rich Low_complexity Low_complexity 1 27 0 2260 95 0 3 chr3 125099877 125100181 -92936977 + AluSg1 SINE Alu 1 303 -6 196 260 34 103 chr3 125100706 125100852 -92936306 + L2 LINE L2 3102 3237 -76 1922 80 18 14 chr3 125102206 125102481 -92934677 + L1PA10 LINE L1 5893 6168 0 3284 96 19 4 chr3 125103918 125104388 -92932770 + L1PA16 LINE L1 5689 6165 -1 202 300 169 39 chr3 125104590 125104720 -92932438 + L2 LINE L2 2319 2465 -849 190 266 89 13 chr3 125105213 125105292 -92931866 + L3 LINE CR1 1362 1446 -131 6693 198 59 37 chr3 125105789 125107788 -92929370 + L1MA4A LINE L1 8 2274 -4575 5425 155 39 20 chr3 125107776 125109178 -92927980 + L1MA4A LINE L1 5583 6998 -7 * 4872 164 37 21 chr3 125109475 125109517 -92927641 - MER54A LTR ERVL 0 901 861 1864 131 40 11 chr3 125109517 125109817 -92927341 - AluSx SINE Alu 0 308 1 4872 164 37 21 chr3 125109817 125110660 -92926498 - MER54A LTR ERVL -40 861 1 341 285 19 38 chr3 125111357 125111515 -92925643 - MLT1J1 LTR MaLR -291 155 1 705 229 63 23 chr3 125111562 125111737 -92925421 - MIR SINE MIR -55 207 26 268 300 0 12 chr3 125111784 125111864 -92925294 + L3 LINE CR1 1248 1326 -251 624 302 89 9 chr3 125111900 125112125 -92925033 - MIR SINE MIR -19 243 1 26 30 0 0 chr3 125112180 125112213 -92924945 + AT_rich Low_complexity Low_complexity 1 33 0 237 269 46 74 chr3 125112682 125112790 -92924368 + L3 LINE CR1 1366 1470 -107 23 33 0 0 chr3 125113415 125113445 -92923713 + AT_rich Low_complexity Low_complexity 1 30 0 754 343 117 32 chr3 125113799 125114493 -92922665 + L2 LINE L2 2224 2976 -338 227 261 369 18 chr3 125114648 125114759 -92922399 + L2 LINE L2 3123 3272 0 343 305 133 16 chr3 125116675 125116803 -92920355 - MIR3 SINE MIR -23 185 43 189 245 57 0 chr3 125117400 125117453 -92919705 - L2 LINE L2 -1 3271 3216 776 191 87 71 chr3 125117592 125117712 -92919446 + MER5C DNA MER1_type 1 118 -206 2336 68 3 10 chr3 125117712 125118008 -92919150 - AluY SINE Alu -17 294 1 776 191 87 71 chr3 125118008 125118139 -92919019 + MER5C DNA MER1_type 118 256 -68 426 347 121 28 chr3 125118240 125118727 -92918431 - L2 LINE L2 -219 3053 2523 3139 186 84 29 chr3 125121085 125121308 -92915850 + L1MB8 LINE L1 5071 5280 -898 1695 168 0 8 chr3 125121308 125121576 -92915582 + AluJo SINE Alu 11 276 -36 3139 186 84 29 chr3 125121576 125122391 -92914767 + L1MB8 LINE L1 5280 6166 -12 1647 176 0 4 chr3 125122729 125122991 -92914167 + AluJb SINE Alu 1 261 -51 215 360 108 39 chr3 125123265 125123571 -92913587 - L2 LINE L2 -339 2975 2649 2078 86 18 4 chr3 125123992 125124302 -92912856 - AluY SINE Alu 0 314 1 1031 102 0 0 chr3 125124305 125124432 -92912726 - AluSq/x SINE Alu -180 133 7 870 265 121 43 chr3 125124498 125124936 -92912222 + L2 LINE L2 2310 2781 -533 2349 79 20 0 chr3 125124948 125125253 -92911905 - AluY SINE Alu 0 311 1 27 29 0 0 chr3 125126430 125126464 -92910694 + AT_rich Low_complexity Low_complexity 1 34 0 491 207 60 0 chr3 125127219 125127335 -92909823 + L1MC/D LINE L1 5682 5804 -2004 204 40 0 0 chr3 125128415 125128440 -92908718 + (T)n Simple_repeat Simple_repeat 1 25 0 2044 266 65 92 chr3 125128482 125129782 -92907376 + L2 LINE L2 2038 3301 -12 40709 33 23 1 chr3 125129825 125135845 -92901313 - L1PA2 LINE L1 0 6155 1 231 330 22 11 chr3 125136339 125136430 -92900728 - MIR3 SINE MIR -9 199 108 184 309 191 0 chr3 125136810 125136920 -92900238 - L2 LINE L2 -1220 2094 1964 1170 161 86 89 chr3 125137039 125137400 -92899758 + MLT2D LTR ERVL 1 360 -54 216 97 0 0 chr3 125137406 125137437 -92899721 + (CA)n Simple_repeat Simple_repeat 2 32 0 1947 126 70 22 chr3 125137677 125138035 -92899123 + THE1C LTR MaLR 1 375 0 21 71 0 0 chr3 125138321 125138363 -92898795 + AT_rich Low_complexity Low_complexity 1 42 0 1357 216 34 12 chr3 125138714 125139168 -92897990 + MLT2B1 LTR ERVL 2 520 0 784 294 65 18 chr3 125139388 125139789 -92897369 + L1ME LINE L1 20 439 -5631 713 294 81 37 chr3 125139846 125140281 -92896877 + L1ME LINE L1 242 695 -5375 225 0 0 0 chr3 125140300 125140325 -92896833 + (TG)n Simple_repeat Simple_repeat 2 26 0 348 311 177 23 chr3 125141142 125141447 -92895711 + L2 LINE L2 2614 2965 -349 270 253 11 81 chr3 125141922 125142009 -92895149 - L2 LINE L2 -4 3309 3229 358 253 187 7 chr3 125142066 125142216 -92894942 - MIR3 SINE MIR -31 177 1 310 333 0 0 chr3 125142984 125143059 -92894099 + MIR SINE MIR 47 121 -87 376 258 0 31 chr3 125144003 125144100 -92893058 + L2 LINE L2 3220 3313 0 1821 167 32 15 chr3 125145528 125145870 -92891288 - MER7A DNA MER2_type 0 346 1 1684 95 5 0 chr3 125146125 125146347 -92890811 - AluSp SINE Alu -1 312 90 294 330 85 0 chr3 125146977 125147095 -92890063 + MIR SINE MIR 120 247 -15 1831 200 28 6 chr3 125148188 125148543 -92888615 + MLT1A1 LTR MaLR 1 363 -2 232 340 64 14 chr3 125149831 125149972 -92887186 - L2 LINE L2 0 3313 3166 464 293 47 34 chr3 125149981 125150278 -92886880 + L1ME LINE L1 4941 5241 -905 2206 154 41 9 chr3 125150366 125150802 -92886356 + L1MB4 LINE L1 5725 6174 -6 429 169 12 0 chr3 125150813 125150896 -92886262 + L1MB8 LINE L1 6089 6172 -6 1041 244 57 59 chr3 125150896 125151319 -92885839 + L1ME LINE L1 5315 5736 -434 2405 93 0 3 chr3 125151334 125151647 -92885511 + AluSx SINE Alu 1 312 0 26 0 0 0 chr3 125153360 125153386 -92883772 + AT_rich Low_complexity Low_complexity 1 26 0 465 260 91 0 chr3 125153606 125153760 -92883398 - MIR3 SINE MIR -3 205 38 472 304 72 51 chr3 125153787 125154024 -92883134 - MIR SINE MIR 0 262 21 316 283 62 15 chr3 125154108 125154327 -92882831 + L1ME LINE L1 5619 5824 -297 1181 53 0 0 chr3 125154343 125154476 -92882682 + AluSg SINE Alu 1 133 -177 5400 201 62 24 chr3 125154715 125156113 -92881045 + Charlie1a DNA MER1_type 1 1451 -4 22 56 0 0 chr3 125157161 125157197 -92879961 + AT_rich Low_complexity Low_complexity 1 36 0 757 214 24 24 chr3 125157200 125157406 -92879752 + L1MD2 LINE L1 6154 6359 0 190 191 119 71 chr3 125157453 125157537 -92879621 - L2 LINE L2 -5 3267 3180 243 0 0 0 chr3 125157537 125157564 -92879594 + (CA)n Simple_repeat Simple_repeat 1 27 0 342 0 0 0 chr3 125157592 125157630 -92879528 + (CA)n Simple_repeat Simple_repeat 2 39 0 206 236 0 18 chr3 125157632 125157687 -92879471 + GA-rich Low_complexity Low_complexity 1 54 0 2079 124 0 0 chr3 125159329 125159635 -92877523 + AluSq SINE Alu 1 306 0 206 214 36 0 chr3 125160407 125160463 -92876695 + A-rich Low_complexity Low_complexity 4 61 0 238 304 108 55 chr3 125160869 125161292 -92875866 + L2 LINE L2 2811 3312 -1 377 297 94 97 chr3 125162689 125163433 -92873725 + L1M4 LINE L1 678 1419 -5430 263 209 0 86 chr3 125165625 125165730 -92871428 - MIR SINE MIR -46 216 121 1019 270 111 27 chr3 125167365 125167492 -92869666 + L2 LINE L2 2657 2772 -541 2066 161 102 32 chr3 125167492 125167963 -92869195 - MLT1D LTR MaLR -1 504 1 1019 270 111 27 chr3 125167963 125168188 -92868970 + L2 LINE L2 2772 2977 -336 5426 64 10 6 chr3 125168188 125168874 -92868284 + LTR8 LTR ERV1 1 689 -2 1019 270 111 27 chr3 125168874 125169118 -92868040 + L2 LINE L2 2977 3313 0 1316 291 93 20 chr3 125169124 125169654 -92867504 + L1M4 LINE L1 3440 3930 -2918 2165 137 3 10 chr3 125169654 125169967 -92867191 + AluSx SINE Alu 1 311 -1 1316 291 93 20 chr3 125169967 125170530 -92866628 + L1M4 LINE L1 3930 4613 -2235 * 3472 157 129 7 chr3 125170525 125171246 -92865912 + L1PB1 LINE L1 384 1192 -5671 1829 102 78 3 chr3 125171246 125171529 -92865629 - LTR17 LTR ERV1 0 780 477 * 2286 67 35 0 chr3 125171517 125171832 -92865326 - LTR17 LTR ERV1 -453 327 2 9052 122 32 13 chr3 125171832 125173476 -92863682 + L1PB1 LINE L1 1188 2920 -3942 40365 38 22 2 chr3 125173487 125179548 -92857610 + L1PA3 LINE L1 3 6155 0 10325 176 48 61 chr3 125179543 125180552 -92856606 + L1PB1 LINE L1 2918 3938 -2929 * 1447 141 0 0 chr3 125180552 125180751 -92856407 + AluSx SINE Alu 1 199 -113 10325 176 48 61 chr3 125180751 125183175 -92853983 + L1PB1 LINE L1 3938 6498 -369 4020 58 2 0 chr3 125183177 125183707 -92853451 + L1PA4 LINE L1 632 1162 -4984 24445 37 0 0 chr3 125183707 125187489 -92849669 + L1PA4 LINE L1 2371 6152 -3 2254 107 16 29 chr3 125187500 125187534 -92849624 + L1PB1 LINE L1 6485 6518 -349 266 0 29 0 chr3 125187534 125187568 -92849590 + (CA)n Simple_repeat Simple_repeat 1 35 0 2254 107 16 29 chr3 125187568 125187916 -92849242 + L1PB1 LINE L1 6518 6862 -5 327 283 73 36 chr3 125188345 125188564 -92848594 + LTR67 LTR ERVL 325 551 -6 575 295 24 51 chr3 125188836 125189090 -92848068 - MIR SINE MIR -5 257 11 306 305 23 8 chr3 125189941 125190072 -92847086 + LTR16C LTR ERVL 359 491 0 445 291 78 28 chr3 125190305 125190484 -92846674 + MIR SINE MIR 51 238 -24 356 335 40 17 chr3 125191395 125191571 -92845587 - L2 LINE L2 -16 3297 3118 183 42 0 0 chr3 125191819 125191843 -92845315 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2555 279 82 28 chr3 125192496 125193865 -92843293 - L1M4 LINE L1 -1072 5074 3603 2206 131 0 0 chr3 125193865 125194177 -92842981 + AluSx SINE Alu 1 312 0 2555 279 82 28 chr3 125194177 125194419 -92842739 - L1M4 LINE L1 -2543 3603 3376 400 191 163 57 chr3 125194522 125194663 -92842495 - MLT1D LTR MaLR -349 156 1 409 289 85 35 chr3 125194663 125194867 -92842291 - L1ME LINE L1 -4826 1389 1197 593 220 70 45 chr3 125194867 125195067 -92842091 - MER63A DNA MER1_type -1 209 5 409 289 85 35 chr3 125195067 125195474 -92841684 - L1ME LINE L1 -5018 1197 798 184 256 0 0 chr3 125196344 125196387 -92840771 - MER5B DNA MER1_type -135 43 1 391 272 71 24 chr3 125196605 125196774 -92840384 - MLT1J LTR MaLR -334 177 1 2508 74 0 6 chr3 125197271 125197582 -92839576 - AluY SINE Alu -2 309 1 228 251 360 11 chr3 125198316 125198491 -92838667 - MIR SINE MIR -6 256 21 3287 181 20 22 chr3 125199598 125200361 -92836797 - L1M4 LINE L1 -908 5238 4478 212 312 32 32 chr3 125200622 125200715 -92836443 - MIR SINE MIR -158 104 12 4835 92 20 132 chr3 125200768 125201693 -92835465 - LTR12 LTR ERV1 0 826 5 2363 174 25 38 chr3 125201709 125202320 -92834838 - pTR5 LTR ERV1 -1094 1344 742 11152 185 11 36 chr3 125202326 125202945 -92834213 + L1PA15 LINE L1 2443 3076 -3089 2244 89 10 0 chr3 125202945 125203236 -92833922 + AluY SINE Alu 18 311 0 11152 185 11 36 chr3 125203236 125204157 -92833001 + L1PA15 LINE L1 3076 4019 -2146 7317 43 1 8 chr3 125204157 125205782 -92831376 + L1PA5 LINE L1 4533 6151 -3 361 53 53 0 chr3 125205782 125205835 -92831323 + L1MA6 LINE L1 6241 6300 0 11152 185 11 36 chr3 125205835 125207430 -92829728 + L1PA15 LINE L1 4018 5473 -692 2308 98 0 16 chr3 125207430 125207736 -92829422 + AluSq SINE Alu 1 301 -12 11152 185 11 36 chr3 125207736 125208412 -92828746 + L1PA15 LINE L1 5473 6165 0 271 311 17 22 chr3 125209517 125209697 -92827461 + CT-rich Low_complexity Low_complexity 1 179 0 421 305 39 8 chr3 125209946 125210074 -92827084 + MIR3 SINE MIR 54 185 -23 1364 160 112 35 chr3 125211466 125211753 -92825405 - AluJb SINE Alu -1 311 3 417 20 0 0 chr3 125211857 125211907 -92825251 + (CA)n Simple_repeat Simple_repeat 1 50 0 3026 152 42 0 chr3 125211910 125212458 -92824700 + Tigger3b DNA MER2_type 2 572 -659 761 326 63 48 chr3 125212470 125213071 -92824087 + L1PA16 LINE L1 788 1397 -6177 281 343 0 0 chr3 125213192 125213291 -92823867 + L1PA16 LINE L1 2084 2182 -5399 14047 219 36 36 chr3 125213527 125214167 -92822991 + L1PA16 LINE L1 2182 2821 -4783 2057 111 113 17 chr3 125214167 125214511 -92822647 - MER51B LTR ERV1 0 377 1 14047 219 36 36 chr3 125214511 125215506 -92821652 + L1PA16 LINE L1 2821 3815 -3789 4202 86 19 9 chr3 125215506 125215726 -92821432 + L1PB1 LINE L1 5564 5780 -371 447 19 0 0 chr3 125215726 125215778 -92821380 + (CA)n Simple_repeat Simple_repeat 2 53 0 4202 86 19 9 chr3 125215778 125216134 -92821024 + L1PB1 LINE L1 5780 6149 -2 14047 219 36 36 chr3 125216134 125218096 -92819062 + L1PA16 LINE L1 3815 5788 -1816 2039 155 0 0 chr3 125218096 125218406 -92818752 + AluSx SINE Alu 1 310 -2 14047 219 36 36 chr3 125218406 125220212 -92816946 + L1PA16 LINE L1 5788 7594 -10 468 126 0 36 chr3 125220218 125220329 -92816829 + Tigger3b DNA MER2_type 556 662 -569 995 163 0 6 chr3 125220365 125220525 -92816633 - AluSg/x SINE Alu -13 296 138 3176 117 34 86 chr3 125220525 125220681 -92816477 + Tigger3b DNA MER2_type 649 812 -2216 1983 139 23 0 chr3 125220681 125220982 -92816176 - AluSx SINE Alu -4 308 1 3176 117 34 86 chr3 125220982 125221440 -92815718 + Tigger3b DNA MER2_type 812 1231 0 198 0 0 0 chr3 125222855 125222877 -92814281 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1545 172 0 56 chr3 125222880 125223097 -92814061 - AluJb SINE Alu -25 287 90 1941 163 0 3 chr3 125223097 125223397 -92813761 + AluJb SINE Alu 1 299 -13 1545 172 0 56 chr3 125223397 125223482 -92813676 - AluJb SINE Alu -222 90 2 608 151 40 125 chr3 125223483 125223525 -92813633 - L1MD2 LINE L1 -479 5880 5836 1869 140 38 3 chr3 125223525 125223818 -92813340 + AluSq SINE Alu 1 303 -10 608 151 40 125 chr3 125223818 125223927 -92813231 - L1MD2 LINE L1 -523 5836 5742 1513 136 16 8 chr3 125223996 125224238 -92812920 + AluSx SINE Alu 56 299 -13 366 129 0 0 chr3 125224238 125224300 -92812858 + (GGAA)n Simple_repeat Simple_repeat 1 62 0 1196 192 41 20 chr3 125224301 125224546 -92812612 - MER39B-int LTR ERV1 -6081 250 1 1044 167 21 0 chr3 125224547 125224733 -92812425 - MER39B LTR ERV1 -35 618 429 393 89 18 0 chr3 125225254 125225310 -92811848 + FAM SINE Alu 119 175 -4 1923 110 92 0 chr3 125225310 125225592 -92811566 + AluSg SINE Alu 1 308 -2 633 186 26 0 chr3 125225835 125225948 -92811210 + L1MC1 LINE L1 6218 6333 0 1875 142 21 7 chr3 125225958 125226239 -92810919 + AluJb SINE Alu 1 285 -27 906 199 31 0 chr3 125226246 125226407 -92810751 + LTR8 LTR ERV1 526 691 0 2245 77 40 3 chr3 125226779 125227077 -92810081 - AluY SINE Alu -1 310 2 1677 173 35 14 chr3 125228015 125228304 -92808854 - AluJb SINE Alu -17 295 1 2404 99 0 0 chr3 125228408 125228710 -92808448 - AluSx SINE Alu -10 302 1 1227 157 5 29 chr3 125228712 125228922 -92808236 - AluJo SINE Alu -21 291 87 2461 79 0 0 chr3 125229085 125229390 -92807768 - AluY SINE Alu -6 305 1 240 337 56 0 chr3 125229501 125229590 -92807568 - MIR SINE MIR -17 245 152 183 304 0 0 chr3 125229722 125229778 -92807380 - L2 LINE L2 -355 2959 2904 1475 196 59 51 chr3 125229794 125230045 -92807113 - MLT1C LTR MaLR -41 426 170 2010 151 3 0 chr3 125230045 125230356 -92806802 - AluSx SINE Alu 0 312 1 1475 196 59 51 chr3 125230356 125230476 -92806682 - MLT1C LTR MaLR -297 170 52 2053 147 0 3 chr3 125230730 125231037 -92806121 + AluJo SINE Alu 1 306 -6 1946 135 0 20 chr3 125231156 125231460 -92805698 + AluSx SINE Alu 3 300 -12 1907 143 0 19 chr3 125232005 125232320 -92804838 - AluSx SINE Alu -3 309 1 225 0 0 0 chr3 125233464 125233489 -92803669 + (T)n Simple_repeat Simple_repeat 1 25 0 337 153 0 0 chr3 125234383 125234442 -92802716 - MER39B LTR ERV1 -591 62 4 4220 130 109 45 chr3 125234462 125235483 -92801675 + pTR5 LTR ERV1 741 2067 -371 767 228 6 12 chr3 125235643 125235814 -92801344 - L1ME LINE L1 -644 5522 5353 2094 139 0 0 chr3 125235963 125236251 -92800907 + AluSx SINE Alu 1 288 -24 2474 76 0 3 chr3 125236260 125236564 -92800594 + AluY SINE Alu 1 303 -8 238 357 0 0 chr3 125236565 125236635 -92800523 + MIR SINE MIR 28 97 -165 195 25 75 25 chr3 125236665 125236705 -92800453 + CT-rich Low_complexity Low_complexity 6 47 0 269 218 36 0 chr3 125236914 125236969 -92800189 - MER66A LTR ERV1 -138 340 284 1134 152 43 56 chr3 125236969 125237200 -92799958 - LOR1-int LTR ERV1 -125 6206 5979 463 177 10 21 chr3 125237291 125237387 -92799771 - LOR1-int LTR ERV1 -437 4499 4405 441 192 0 0 chr3 125237413 125237486 -92799672 - LOR1-int LTR ERV1 -3178 4942 4870 570 117 0 0 chr3 125237502 125237579 -92799579 - AluJo SINE Alu -23 289 213 1605 120 47 0 chr3 125237579 125237837 -92799321 - LOR1-int LTR ERV1 -655 5676 5407 1425 116 45 5 chr3 125237837 125238036 -92799122 + AluJo SINE Alu 1 207 -105 1425 116 45 5 chr3 125238281 125238479 -92798679 - AluJo SINE Alu -106 206 1 1696 122 27 0 chr3 125238479 125238742 -92798416 + MER31-int LTR ERV1 5407 5676 -655 570 117 0 0 chr3 125238742 125238819 -92798339 + AluJo SINE Alu 213 289 -23 378 218 13 13 chr3 125238828 125238906 -92798252 + MER31-int LTR ERV1 3465 4943 -1473 493 172 10 20 chr3 125238932 125239031 -92798127 + MER31-int LTR ERV1 4405 4502 -434 1290 164 66 49 chr3 125239052 125239338 -92797820 + MER31-int LTR ERV1 5916 6206 -125 290 189 38 0 chr3 125239338 125239391 -92797767 + MER66A LTR ERV1 284 338 -140 1038 151 0 12 chr3 125239667 125239833 -92797325 - AluJo/FRAM SINE Alu -8 304 141 2259 93 21 0 chr3 125239836 125240125 -92797033 - AluSx SINE Alu -17 295 1 514 158 40 0 chr3 125240598 125240699 -92796459 + AluSq/x SINE Alu 2 106 -207 2386 50 0 7 chr3 125240843 125241150 -92796008 + AluY SINE Alu 1 305 0 2197 118 0 3 chr3 125242108 125242396 -92794762 + AluSc SINE Alu 9 295 -14 948 236 34 20 chr3 125242410 125242702 -92794456 + L1MC5 LINE L1 7608 7903 -58 2163 126 0 3 chr3 125242720 125243022 -92794136 + AluSx SINE Alu 1 301 -11 1179 94 7 0 chr3 125243030 125243179 -92793979 + AluSq/x SINE Alu 1 150 -162 910 261 68 27 chr3 125243309 125243757 -92793401 - L2 LINE L2 -178 3135 2662 2406 62 3 3 chr3 125243757 125244046 -92793112 + AluY SINE Alu 1 289 -22 910 261 68 27 chr3 125244046 125244078 -92793080 - L2 LINE L2 -651 2662 2633 380 289 26 0 chr3 125244673 125244787 -92792371 + L2 LINE L2 3193 3309 -4 6795 259 28 36 chr3 125245900 125246178 -92790980 - HERV17 LTR ERV1 -5580 3021 2742 7725 31 0 0 chr3 125246178 125247171 -92789987 - L1PA3 LINE L1 -5 6150 5157 6795 259 28 36 chr3 125247171 125249581 -92787577 - HERV17 LTR ERV1 -5859 2742 1 514 204 32 35 chr3 125249613 125249752 -92787406 - pTR5 LTR ERV1 -251 463 19 255 175 0 0 chr3 125250079 125250119 -92787039 - AluSp SINE Alu -134 169 130 21 71 0 0 chr3 125250121 125250163 -92786995 + AT_rich Low_complexity Low_complexity 1 42 0 2116 253 50 12 chr3 125250697 125251342 -92785816 - L1ME1 LINE L1 -5 6161 5493 * 2599 242 104 42 chr3 125251337 125251545 -92785613 + L1MDa LINE L1 1000 1194 -5346 1887 133 66 30 chr3 125251545 125251907 -92785251 + THE1C LTR MaLR 1 375 0 9037 134 41 40 chr3 125251909 125252413 -92784745 + THE1C-int LTR MaLR 3 505 -1075 2092 125 7 0 chr3 125252413 125252701 -92784457 + AluSc SINE Alu 1 290 -19 9037 134 41 40 chr3 125252701 125253773 -92783385 + THE1C-int LTR MaLR 505 1580 0 1633 152 95 26 chr3 125253773 125254122 -92783036 + THE1C LTR MaLR 1 373 -2 2599 242 104 42 chr3 125254122 125255265 -92781893 + L1MDa LINE L1 1193 2439 -4101 21 0 0 0 chr3 125255271 125255292 -92781866 + AT_rich Low_complexity Low_complexity 1 21 0 315 85 0 0 chr3 125255734 125255781 -92781377 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 348 313 78 39 chr3 125255930 125256415 -92780743 - HAL1 LINE L1 -857 1650 1147 1590 179 112 3 chr3 125256575 125256888 -92780270 + MSTD LTR MaLR 46 392 -4 787 219 226 11 chr3 125257935 125258205 -92778953 + LTR50 LTR ERVL 3 330 -465 683 252 150 28 chr3 125258240 125258526 -92778632 + LTR50 LTR ERVL 475 795 0 2534 80 0 0 chr3 125259059 125259361 -92777797 - AluY SINE Alu -9 302 1 243 260 255 69 chr3 125259408 125259612 -92777546 - MIR SINE MIR -13 249 8 1940 167 0 0 chr3 125259959 125260253 -92776905 - AluJb SINE Alu -18 294 1 240 360 56 16 chr3 125260863 125260988 -92776170 + MIR SINE MIR 19 148 -60 640 308 60 49 chr3 125261021 125261587 -92775571 - MLT1K LTR MaLR 0 615 20 2242 127 3 19 chr3 125261800 125262123 -92775035 - MER1B DNA MER1_type -21 318 1 191 229 16 0 chr3 125263072 125263133 -92774025 + CT-rich Low_complexity Low_complexity 4 65 0 650 294 28 37 chr3 125264296 125264514 -92772644 + MIR SINE MIR 33 248 -14 201 381 0 0 chr3 125264640 125264703 -92772455 - MIR SINE MIR -67 141 79 326 233 124 16 chr3 125265514 125265643 -92771515 + MER103 DNA DNA 4 146 -20 210 373 47 27 chr3 125265705 125265855 -92771303 + MIR3 SINE MIR 28 180 -28 365 262 16 115 chr3 125266096 125266348 -92770810 + L2 LINE L2 2461 2687 -627 446 313 0 23 chr3 125266475 125266603 -92770555 - L2 LINE L2 0 3272 3148 334 179 52 11 chr3 125266603 125266734 -92770424 - MER5A DNA MER1_type 0 189 1 706 299 187 19 chr3 125266734 125267362 -92769796 - L2 LINE L2 -117 3196 2455 2244 111 0 19 chr3 125267699 125268014 -92769144 + AluSx SINE Alu 1 309 -3 534 212 205 7 chr3 125268161 125268312 -92768846 + MER5A DNA MER1_type 9 189 0 2264 104 0 10 chr3 125269141 125269449 -92767709 - AluSx SINE Alu -5 307 3 227 431 76 0 chr3 125270877 125271021 -92766137 - L2 LINE L2 -2 3270 3116 1260 264 109 18 chr3 125271282 125271775 -92765383 - L1ME4a LINE L1 -5 6116 5579 23 0 0 0 chr3 125271932 125271955 -92765203 + AT_rich Low_complexity Low_complexity 1 23 0 241 191 0 29 chr3 125272292 125272360 -92764798 + L1MC4 LINE L1 6638 6703 -1339 271 248 20 50 chr3 125273969 125274070 -92763088 + MIR SINE MIR 114 211 -51 449 264 9 0 chr3 125274808 125274914 -92762244 + MIR SINE MIR 81 187 -75 302 285 57 8 chr3 125274931 125275054 -92762104 + MIR SINE MIR 124 252 -10 229 250 15 15 chr3 125276058 125276126 -92761032 + GA-rich Low_complexity Low_complexity 3 70 0 351 346 7 15 chr3 125276185 125276321 -92760837 + MIR SINE MIR 20 154 -108 310 324 102 25 chr3 125276728 125276878 -92760280 - L3 LINE CR1 -911 666 488 2664 172 21 5 chr3 125276878 125277297 -92759861 + MSTB LTR MaLR 1 426 0 310 324 102 25 chr3 125277297 125277390 -92759768 - L3 LINE CR1 -1089 488 404 32 0 0 0 chr3 125277424 125277456 -92759702 + AT_rich Low_complexity Low_complexity 1 32 0 190 339 98 63 chr3 125277577 125277751 -92759407 - L3 LINE CR1 -1353 224 45 299 113 16 0 chr3 125278107 125278169 -92758989 + (CA)n Simple_repeat Simple_repeat 2 64 0 908 160 13 13 chr3 125278169 125278325 -92758833 + MER3 DNA MER1_type 1 156 -53 2343 45 42 0 chr3 125278820 125279106 -92758052 + AluY SINE Alu 1 298 -13 850 176 6 25 chr3 125279177 125279336 -92757822 + MIR SINE MIR 17 172 -90 292 254 28 14 chr3 125279802 125279873 -92757285 - L2 LINE L2 -1 3271 3200 2052 133 52 17 chr3 125281261 125281623 -92755535 + THE1C LTR MaLR 1 375 0 180 0 0 0 chr3 125281712 125281732 -92755426 + (TTA)n Simple_repeat Simple_repeat 2 21 0 277 240 97 5 chr3 125281769 125281876 -92755282 - MIR SINE MIR -80 128 6 1037 203 10 90 chr3 125281948 125281986 -92755172 + MLT1A1 LTR MaLR 81 120 -245 206 81 27 0 chr3 125281986 125282023 -92755135 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 2241 126 39 41 chr3 125282028 125282392 -92754766 + THE1B LTR MaLR 1 363 -1 1675 178 0 18 chr3 125282392 125282678 -92754480 - AluJb SINE Alu -31 281 1 1037 203 10 90 chr3 125282678 125282942 -92754216 + MLT1A1 LTR MaLR 122 365 0 180 0 0 0 chr3 125283484 125283504 -92753654 + (TGGGGG)n Simple_repeat Simple_repeat 3 22 0 30 0 0 0 chr3 125283746 125283776 -92753382 + AT_rich Low_complexity Low_complexity 1 30 0 5584 93 0 4 chr3 125284367 125285120 -92752038 - L1PB1 LINE L1 -1 6150 5401 505 255 27 90 chr3 125286174 125286362 -92750796 + MER5B DNA MER1_type 3 178 0 955 222 33 0 chr3 125286370 125286550 -92750608 - MER5A DNA MER1_type 0 189 4 2176 73 7 14 chr3 125288406 125288704 -92748454 + AluSg SINE Alu 11 306 0 673 269 124 48 chr3 125288889 125289220 -92747938 + LTR18A LTR ERVL 1 356 -1 5221 209 3 8 chr3 125289245 125290221 -92746937 + HERVL18 LTR ERVL 4 974 -5073 981 185 6 6 chr3 125290204 125290382 -92746776 + HERVL18 LTR ERVL 2758 2935 -3112 * 243 61 0 0 chr3 125291421 125291454 -92745704 + (GA)n Simple_repeat Simple_repeat 1 33 0 296 315 65 0 chr3 125291462 125291570 -92745588 + MER94 DNA DNA 1 115 -19 185 283 22 0 chr3 125291799 125291845 -92745313 + MIR SINE MIR 104 150 -112 3336 278 72 17 chr3 125292668 125293956 -92743202 + L2 LINE L2 1786 3138 -175 1609 183 35 7 chr3 125294152 125294437 -92742721 + AluJb SINE Alu 1 293 -19 234 226 0 19 chr3 125295550 125295602 -92741556 - L3 LINE CR1 -2 1575 1525 295 235 212 0 chr3 125295602 125295687 -92741471 + MER5B DNA MER1_type 2 104 -74 425 313 62 31 chr3 125295837 125296032 -92741126 - L3 LINE CR1 -147 1430 1230 333 273 127 18 chr3 125296040 125296150 -92741008 - L2 LINE L2 -14 3258 3137 386 321 61 12 chr3 125296227 125296392 -92740766 - L3 LINE CR1 -351 1226 1054 2120 69 4 0 chr3 125297046 125297308 -92739850 - AluY SINE Alu -20 291 29 24 32 0 0 chr3 125297452 125297483 -92739675 + AT_rich Low_complexity Low_complexity 1 31 0 184 330 102 93 chr3 125298583 125299025 -92738133 - L2 LINE L2 -11 3261 2816 301 262 0 60 chr3 125299482 125299566 -92737592 - MER5A DNA MER1_type -48 141 63 186 43 0 0 chr3 125300233 125300256 -92736902 + (TG)n Simple_repeat Simple_repeat 2 24 0 428 313 45 70 chr3 125301376 125301619 -92735539 + MIR SINE MIR 26 262 0 288 275 12 12 chr3 125302588 125302668 -92734490 - MLT1K LTR MaLR -1 587 508 224 287 11 11 chr3 125303788 125303875 -92733283 + GA-rich Low_complexity Low_complexity 5 91 0 317 259 44 13 chr3 125303952 125304055 -92733103 - MER91 DNA MER1_type -1 189 86 216 286 60 68 chr3 125304454 125304587 -92732571 - MIR SINE MIR -107 155 24 2162 102 3 32 chr3 125305143 125305498 -92731660 + AluSx SINE Alu 1 312 0 233 349 41 34 chr3 125305740 125305886 -92731272 + L2 LINE L2 2910 3056 -216 311 294 137 0 chr3 125305934 125306036 -92731122 - L2 LINE L2 -11 3261 3146 449 316 50 0 chr3 125306107 125306246 -92730912 + L2 LINE L2 3127 3272 0 1975 116 10 46 chr3 125307230 125307533 -92729625 - AluSg SINE Alu -18 292 1 539 93 47 0 chr3 125307820 125307906 -92729252 - L1MC2 LINE L1 -1 6343 6254 301 306 6 44 chr3 125307917 125308122 -92729036 - HAL1b LINE L1 -127 2380 796 321 294 59 35 chr3 125308477 125308647 -92728511 - HAL1 LINE L1 -829 1661 1488 293 267 9 34 chr3 125308862 125308979 -92728179 - L1MEd LINE L1 -1242 1248 1045 289 240 0 13 chr3 125309411 125309486 -92727672 + CT-rich Low_complexity Low_complexity 3 76 0 458 216 37 62 chr3 125310843 125311006 -92726152 + MIR3 SINE MIR 9 166 -65 199 290 48 0 chr3 125311343 125311405 -92725753 + L3 LINE CR1 1065 1129 -448 356 321 29 7 chr3 125311664 125311801 -92725357 + L3 LINE CR1 1180 1319 -258 282 321 107 23 chr3 125312203 125312334 -92724824 - MER5A DNA MER1_type -5 184 43 214 316 21 32 chr3 125312356 125312451 -92724707 + L3 LINE CR1 1481 1574 -3 197 224 45 75 chr3 125312891 125312958 -92724200 + MER5A DNA MER1_type 12 76 -113 512 207 13 107 chr3 125312961 125313062 -92724096 - MER5B DNA MER1_type -42 136 52 2352 55 15 58 chr3 125313062 125313387 -92723771 + AluY SINE Alu 1 311 0 512 207 13 107 chr3 125313387 125313435 -92723723 - MER5B DNA MER1_type -126 52 1 261 304 82 59 chr3 125313435 125313558 -92723600 + MER5A DNA MER1_type 61 186 -3 368 306 30 45 chr3 125313586 125313720 -92723438 + MIR SINE MIR 35 166 -96 350 336 25 8 chr3 125313727 125313839 -92723319 + MIR SINE MIR 1 114 -148 406 265 182 0 chr3 125313839 125313971 -92723187 - MER5A DNA MER1_type -2 187 32 1725 167 79 50 chr3 125313986 125314364 -92722794 - MER45B DNA AcHobo -19 1021 633 3879 124 3 14 chr3 125314389 125314962 -92722196 - L1PA15 LINE L1 0 6165 5599 2299 95 0 30 chr3 125314959 125315298 -92721860 + L1PA15 LINE L1 5273 5601 -564 * 4334 169 86 23 chr3 125315296 125315643 -92721515 - L1PB4 LINE L1 -4 6152 5828 294 95 0 0 chr3 125315643 125315685 -92721473 + (TA)n Simple_repeat Simple_repeat 1 42 0 4334 169 86 23 chr3 125315685 125315875 -92721283 - L1PB4 LINE L1 -328 5828 5651 2156 111 42 31 chr3 125315875 125316235 -92720923 - THE1B LTR MaLR 0 364 1 4334 169 86 23 chr3 125316235 125317557 -92719601 - L1PB4 LINE L1 -505 5651 4169 483 379 59 39 chr3 125317594 125318103 -92719055 - L1M2 LINE L1 -6321 528 10 2350 225 81 26 chr3 125318110 125318696 -92718462 - MER45B DNA AcHobo -394 646 24 2463 85 0 13 chr3 125318696 125319012 -92718146 + AluSq SINE Alu 1 312 -1 2350 225 81 26 chr3 125319012 125319036 -92718122 - MER45B DNA AcHobo -1016 24 3 271 127 127 48 chr3 125320291 125320354 -92716804 + MER110A LTR ERV1 69 136 -332 478 261 141 5 chr3 125320502 125320701 -92716457 + MER110A LTR ERV1 243 468 0 245 170 7 69 chr3 125320744 125320802 -92716356 + MIR SINE MIR 46 107 -101 1869 150 92 34 chr3 125320802 125321314 -92715844 + MLT2A2 LTR ERVL 1 554 0 477 248 109 0 chr3 125321315 125321452 -92715706 + MIR SINE MIR 100 251 -11 773 193 127 44 chr3 125321452 125321595 -92715563 + L1MA9 LINE L1 6005 6135 -177 477 0 0 0 chr3 125321595 125321648 -92715510 + (CA)n Simple_repeat Simple_repeat 2 54 0 773 193 127 44 chr3 125321648 125321779 -92715379 + L1MA9 LINE L1 6135 6302 -10 28 0 0 0 chr3 125321825 125321853 -92715305 + AT_rich Low_complexity Low_complexity 1 28 0 464 188 98 0 chr3 125322603 125322715 -92714443 + MER5C DNA MER1_type 1 123 -201 208 146 24 0 chr3 125322904 125322945 -92714213 + MER5C DNA MER1_type 283 324 0 279 0 0 0 chr3 125323686 125323717 -92713441 + (TG)n Simple_repeat Simple_repeat 2 32 0 198 0 0 0 chr3 125323716 125323738 -92713420 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 707 222 0 6 chr3 125323836 125323998 -92713160 + MER46A DNA MER2_type 1 161 -75 781 179 0 0 chr3 125323998 125324132 -92713026 - Tigger3(Golem) DNA MER2_type -1 3028 2895 601 234 36 22 chr3 125325483 125325620 -92711538 + L2 LINE L2 3134 3272 0 186 328 69 0 chr3 125326235 125326293 -92710865 - L2 LINE L2 -1 3312 3251 324 0 0 0 chr3 125327084 125327120 -92710038 + (TC)n Simple_repeat Simple_repeat 2 37 0 1842 195 60 68 chr3 125327331 125327844 -92709314 + MLT2B1 LTR ERVL 1 509 -11 193 258 0 91 chr3 125327920 125327986 -92709172 - L2 LINE L2 -4 3268 3209 731 289 125 58 chr3 125328278 125328997 -92708161 + L1M4 LINE L1 2392 3158 -2988 651 174 58 0 chr3 125329000 125329121 -92708037 + FRAM SINE Alu 1 40 0 32 0 0 0 chr3 125330024 125330056 -92707102 + AT_rich Low_complexity Low_complexity 1 32 0 180 0 0 0 chr3 125330257 125330277 -92706881 + (A)n Simple_repeat Simple_repeat 1 20 0 262 371 0 10 chr3 125331976 125332073 -92705085 - MIR SINE MIR -141 121 26 237 33 0 0 chr3 125332357 125332387 -92704771 + (T)n Simple_repeat Simple_repeat 1 30 0 2247 83 3 20 chr3 125333234 125333535 -92703623 + AluSp SINE Alu 1 296 -17 192 267 133 13 chr3 125333784 125333859 -92703299 - L2 LINE L2 -50 3222 3139 180 246 231 0 chr3 125334015 125334080 -92703078 + MIR SINE MIR 30 109 -99 226 171 57 0 chr3 125334080 125334150 -92703008 + (TA)n Simple_repeat Simple_repeat 2 75 0 232 286 0 0 chr3 125334169 125334225 -92702933 + MIR3 SINE MIR 153 208 0 212 304 129 89 chr3 125335038 125335410 -92701748 + L2 LINE L2 2859 3245 -27 996 90 0 0 chr3 125335952 125336086 -92701072 + AluSp/q SINE Alu 176 309 -4 2058 83 11 0 chr3 125336095 125336360 -92700798 - AluSq SINE Alu -45 268 1 582 268 98 16 chr3 125336457 125336651 -92700507 + MIR SINE MIR 32 241 -21 194 286 0 0 chr3 125337473 125337522 -92699636 + L2 LINE L2 3214 3262 -10 2083 154 0 0 chr3 125338508 125338820 -92698338 - AluSx SINE Alu 0 312 1 2453 73 0 3 chr3 125338835 125339138 -92698020 + AluY SINE Alu 1 302 -9 256 379 39 0 chr3 125339139 125339242 -92697916 + MIR SINE MIR 28 134 -128 231 250 0 19 chr3 125339242 125339294 -92697864 + CT-rich Low_complexity Low_complexity 3 53 0 685 321 70 21 chr3 125339615 125340203 -92696955 - L1ME3 LINE L1 -214 5948 5332 235 198 21 73 chr3 125340355 125340451 -92696707 + T-rich Low_complexity Low_complexity 5 95 0 445 303 55 20 chr3 125340865 125341347 -92695811 - L1MEd LINE L1 -872 1618 1022 1911 82 29 0 chr3 125341375 125341655 -92695503 - L1MA1 LINE L1 -1 6301 6014 24 53 0 0 chr3 125341706 125341744 -92695414 + AT_rich Low_complexity Low_complexity 1 38 0 946 307 59 47 chr3 125341920 125342767 -92694391 - L1MEd LINE L1 -5240 879 23 191 276 35 35 chr3 125342877 125342935 -92694223 + L2 LINE L2 3244 3301 -12 340 294 126 16 chr3 125343869 125344124 -92693034 - MLT1K LTR MaLR -27 561 279 2180 129 36 33 chr3 125346171 125346534 -92690624 + THE1B LTR MaLR 1 364 0 730 153 27 82 chr3 125346538 125346721 -92690437 + MER44D DNA MER2_type 22 464 -145 1326 130 5 0 chr3 125346723 125346938 -92690220 - L1MB3 LINE L1 -177 6006 5791 260 259 99 0 chr3 125347338 125347419 -92689739 + MIR SINE MIR 155 243 -19 352 193 138 28 chr3 125347421 125347530 -92689628 + MIR3 SINE MIR 70 190 -18 341 315 74 20 chr3 125350871 125351020 -92686138 + MIR3 SINE MIR 50 206 -2 1066 177 110 47 chr3 125351240 125351557 -92685601 + MER57A LTR ERV1 67 403 0 272 211 0 66 chr3 125351932 125352006 -92685152 + LTR33A LTR ERVL 437 505 -18 773 174 42 182 chr3 125352006 125352391 -92684767 - MLT2D LTR ERVL 0 414 84 1747 40 0 0 chr3 125352831 125353053 -92684105 - L1PA3 LINE L1 -282 5873 5652 2218 51 0 0 chr3 125353053 125353368 -92683790 + L1PA3 LINE L1 5879 6193 0 982 342 13 21 chr3 125353792 125354476 -92682682 + ERVL-E LTR ERVL 1257 1887 -3109 267 359 31 7 chr3 125354613 125354814 -92682344 + ERVL-E LTR ERVL 2781 3024 -2013 1114 300 32 10 chr3 125355064 125355471 -92681687 + ERVL-E LTR ERVL 3332 3747 -2017 2427 231 28 39 chr3 125355562 125356305 -92680853 + ERVL-E LTR ERVL 3883 4617 -1147 465 274 38 25 chr3 125356675 125356866 -92680292 + ERVL-E LTR ERVL 5128 5376 -317 340 297 69 21 chr3 125357217 125357362 -92679796 + MLT2E LTR ERVL 1 152 -476 258 193 0 18 chr3 125357595 125357652 -92679506 + LTR33A LTR ERVL 459 514 -9 741 160 0 30 chr3 125358143 125358274 -92678884 + FLAM_A SINE Alu 4 130 -3 2755 85 92 2 chr3 125358490 125358901 -92678257 + LTR7 LTR ERV1 1 448 -2 184 313 30 0 chr3 125358948 125359015 -92678143 + MIR SINE MIR 88 156 -106 27 0 0 0 chr3 125359188 125359215 -92677943 + AT_rich Low_complexity Low_complexity 1 27 0 331 246 80 29 chr3 125360600 125360738 -92676420 - MIR SINE MIR -32 230 86 337 343 59 47 chr3 125363055 125363291 -92673867 + MIR SINE MIR 3 241 -21 783 281 25 29 chr3 125363311 125363549 -92673609 + MIR SINE MIR 2 238 -24 389 268 109 0 chr3 125363661 125363799 -92673359 + MIR SINE MIR 105 257 -5 418 269 132 71 chr3 125364115 125364172 -92672986 - MIR SINE MIR 0 262 210 3035 169 10 7 chr3 125364172 125364774 -92672384 - L1MB7 LINE L1 0 6184 5581 418 269 132 71 chr3 125364774 125364913 -92672245 - MIR SINE MIR -52 210 54 283 286 24 12 chr3 125365205 125365373 -92671785 - L1MB7 LINE L1 -854 5292 5123 816 295 23 5 chr3 125365374 125365591 -92671567 + MIR SINE MIR 21 241 -21 462 312 76 28 chr3 125365982 125366299 -92670859 - L1MEd LINE L1 -5447 672 341 216 172 0 71 chr3 125366605 125366704 -92670454 + CT-rich Low_complexity Low_complexity 4 95 0 318 326 37 59 chr3 125367433 125367568 -92669590 - L2 LINE L2 -2 3270 3139 2174 95 0 20 chr3 125367863 125368167 -92668991 - AluSg SINE Alu -11 299 2 2401 81 3 0 chr3 125368968 125369277 -92667881 - AluSp SINE Alu -3 310 1 27 0 0 0 chr3 125370022 125370049 -92667109 + AT_rich Low_complexity Low_complexity 1 27 0 493 342 29 29 chr3 125370145 125370423 -92666735 + L1ME LINE L1 5386 5663 -458 9140 208 61 31 chr3 125370428 125373068 -92664090 + L1ME4a LINE L1 1 2713 -3827 8636 24 0 201 chr3 125373068 125374548 -92662610 + SVA Other Other 205 1386 0 9140 208 61 31 chr3 125374548 125374583 -92662575 + L1ME4a LINE L1 2713 2745 -3795 3169 254 51 9 chr3 125374591 125375766 -92661392 + L1ME4a LINE L1 2796 4019 -2521 2835 184 47 22 chr3 125375770 125376410 -92660748 + L1MD1 LINE L1 5587 6242 0 441 216 115 5 chr3 125376422 125376640 -92660518 + L1ME4a LINE L1 6092 6333 -182 392 315 21 8 chr3 125376652 125376890 -92660268 + L1MC4a LINE L1 4762 5002 -1144 408 138 0 0 chr3 125376896 125376961 -92660197 + MLT2B3 LTR ERVL 1 65 -489 2182 174 35 53 chr3 125377066 125377554 -92659604 + MLT2B3 LTR ERVL 76 554 0 301 288 65 24 chr3 125377574 125377744 -92659414 + L1MC4a LINE L1 5025 5201 -945 526 114 0 0 chr3 125377744 125377823 -92659335 + L1MA2 LINE L1 6226 6304 0 336 223 114 17 chr3 125377903 125378078 -92659080 + L1MC4a LINE L1 5255 5446 -2362 375 141 0 0 chr3 125378102 125378166 -92658992 + (CA)n Simple_repeat Simple_repeat 1 64 0 400 154 0 0 chr3 125378166 125378231 -92658927 + LTR40b LTR ERVL 338 402 -60 251 122 20 20 chr3 125378240 125378289 -92658869 + L1MC4a LINE L1 5739 5787 -334 1363 243 34 48 chr3 125378289 125378729 -92658429 - LTR40b LTR ERVL 0 462 29 325 255 123 19 chr3 125378741 125378847 -92658311 + L1MC4a LINE L1 5781 5897 -1911 211 136 0 23 chr3 125378869 125378913 -92658245 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 5232 210 61 64 chr3 125379023 125380862 -92656296 + L1MC4a LINE L1 5973 7807 -1 23 0 0 0 chr3 125381261 125381284 -92655874 + AT_rich Low_complexity Low_complexity 1 23 0 800 283 108 41 chr3 125381304 125381820 -92655338 - L1ME4a LINE L1 -236 5885 5335 448 361 107 15 chr3 125381980 125382390 -92654768 + L3 LINE CR1 1128 1575 -2 181 368 108 10 chr3 125382853 125383057 -92654101 + L3b LINE CR1 1328 1551 -32 470 279 9 9 chr3 125383583 125383694 -92653464 - MIR3 SINE MIR -49 159 49 449 360 0 0 chr3 125384909 125385034 -92652124 - MIR3 SINE MIR -49 159 35 294 257 52 44 chr3 125385588 125385724 -92651434 + MIR3 SINE MIR 18 154 -54 205 191 24 0 chr3 125387439 125387481 -92649677 + GA-rich Low_complexity Low_complexity 3 45 0 340 333 45 15 chr3 125388093 125388225 -92648933 - L2 LINE L2 -4 3268 3133 597 245 88 115 chr3 125388260 125388856 -92648302 - L2 LINE L2 0 3313 2743 280 330 151 14 chr3 125390612 125390830 -92646328 - L2 LINE L2 -189 3083 2836 1802 241 73 17 chr3 125391109 125391632 -92645526 + MLT1E2 LTR MaLR 51 602 -24 597 324 68 18 chr3 125391667 125391889 -92645269 + MIR SINE MIR 30 262 0 233 250 0 0 chr3 125391920 125391964 -92645194 + MIR SINE MIR 201 244 -18 1193 203 73 16 chr3 125392584 125392953 -92644205 - MER69 DNA AcHobo 0 2526 2137 30 0 0 0 chr3 125393191 125393221 -92643937 + AT_rich Low_complexity Low_complexity 1 30 0 9532 184 7 7 chr3 125393261 125396377 -92640781 - L1PB1 LINE L1 -22 6845 3730 840 259 40 50 chr3 125396422 125396823 -92640335 - L1PB1 LINE L1 -6461 402 6 284 197 121 0 chr3 125397049 125397115 -92640043 - MER69 DNA AcHobo -102 75 2 386 310 94 38 chr3 125397167 125397380 -92639778 + L2 LINE L2 2893 3117 -155 383 302 60 0 chr3 125397601 125397717 -92639441 - L2 LINE L2 -262 3010 2888 241 364 100 0 chr3 125397738 125397878 -92639280 + L2 LINE L2 3110 3263 -9 647 210 66 6 chr3 125397959 125398126 -92639032 + MER104 DNA MER2_type 4 180 0 619 332 45 14 chr3 125398864 125399156 -92638002 - L3 LINE CR1 -82 1495 1195 726 268 21 26 chr3 125399268 125399458 -92637700 - MIR SINE MIR -22 240 52 1853 178 38 67 chr3 125399902 125400347 -92636811 - MSTB1 LTR MaLR 0 432 1 279 0 0 0 chr3 125400466 125400497 -92636661 + (TA)n Simple_repeat Simple_repeat 1 31 0 1794 140 15 4 chr3 125400502 125400767 -92636391 - AluSx SINE Alu -44 268 1 262 314 19 0 chr3 125400836 125400941 -92636217 - LTR16A1 LTR ERVL 0 457 351 416 329 114 22 chr3 125401212 125401440 -92635718 - MIR SINE MIR -3 259 11 293 358 73 0 chr3 125401505 125401628 -92635530 - L2 LINE L2 -4 3268 3137 798 269 135 14 chr3 125403492 125403774 -92633384 + MLT1I LTR MaLR 93 408 -1 25 31 0 0 chr3 125403941 125403973 -92633185 + AT_rich Low_complexity Low_complexity 1 32 0 414 340 25 12 chr3 125405539 125405701 -92631457 + MIR3 SINE MIR 17 180 -28 234 340 190 43 chr3 125405759 125405991 -92631167 - L2 LINE L2 -45 3227 2962 267 54 0 0 chr3 125406136 125406173 -92630985 + (TC)n Simple_repeat Simple_repeat 2 38 0 889 261 36 82 chr3 125406749 125407224 -92629934 - MLT1J LTR MaLR -39 472 20 974 96 0 0 chr3 125407249 125407374 -92629784 - AluSq/x SINE Alu -187 125 1 189 74 0 0 chr3 125407783 125407810 -92629348 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 674 287 68 27 chr3 125407887 125408225 -92628933 - L2 LINE L2 -80 3233 2882 527 313 129 15 chr3 125408902 125409103 -92628055 - L2 LINE L2 -539 2775 2552 1873 155 96 34 chr3 125410249 125410271 -92626887 - MSTB1 LTR MaLR 0 432 413 4249 126 2 10 chr3 125410271 125410888 -92626270 + LTR9 LTR ERV1 1 612 0 1873 155 96 34 chr3 125410888 125411272 -92625886 - MSTB1 LTR MaLR -19 413 1 1414 201 76 6 chr3 125411272 125411598 -92625560 - MLT1A1 LTR MaLR -16 349 1 10397 99 19 0 chr3 125411771 125414129 -92623029 + L1PA8A LINE L1 3704 6104 -27 261 321 0 0 chr3 125414375 125414459 -92622699 - MIR SINE MIR 0 262 179 195 318 0 18 chr3 125414440 125414536 -92622622 - MIR3 SINE MIR -45 163 71 * 2373 210 44 2 chr3 125414877 125415330 -92621828 + MER70A LTR ERVL 1 472 0 252 347 0 13 chr3 125415926 125416001 -92621157 - MIR SINE MIR -187 75 2 324 295 13 0 chr3 125416442 125416520 -92620638 + MIR SINE MIR 35 113 -95 1148 191 39 88 chr3 125416966 125417399 -92619759 - MLT2B1 LTR ERVL -1 413 3 2520 60 0 13 chr3 125418852 125419167 -92617991 + AluY SINE Alu 1 311 0 298 331 27 51 chr3 125419335 125419568 -92617590 - MIR SINE MIR -27 235 4 246 380 35 28 chr3 125420171 125420313 -92616845 - L2 LINE L2 -8 3264 3122 2084 226 22 31 chr3 125420654 125421208 -92615950 + MLT1E3 LTR MaLR 76 624 0 432 301 197 6 chr3 125421346 125421529 -92615629 + MIR SINE MIR 31 248 -14 532 227 221 0 chr3 125422004 125422158 -92615000 + MER5A DNA MER1_type 2 189 0 231 280 60 20 chr3 125422683 125422783 -92614375 + MIR SINE MIR 3 106 -156 392 174 0 14 chr3 125422827 125422896 -92614262 - MER5A DNA MER1_type 0 189 122 542 218 100 140 chr3 125423518 125423617 -92613541 - MIR SINE MIR -1 261 160 642 99 14 70 chr3 125423617 125423759 -92613399 - L1MA8 LINE L1 -6 6285 6152 542 218 100 140 chr3 125423759 125423930 -92613228 - MIR SINE MIR -102 160 2 34 24 0 0 chr3 125424789 125424830 -92612328 + AT_rich Low_complexity Low_complexity 1 41 0 432 0 0 0 chr3 125426699 125426747 -92610411 + (TG)n Simple_repeat Simple_repeat 2 49 0 1449 174 80 87 chr3 125426892 125427294 -92609864 - MER57A LTR ERV1 -2 401 3 1608 179 51 17 chr3 125427416 125427712 -92609446 + AluJo SINE Alu 1 306 -6 234 348 0 0 chr3 125427952 125428030 -92609128 - MIR SINE MIR -62 146 69 242 299 124 0 chr3 125428127 125428264 -92608894 - MIR SINE MIR 0 262 109 1041 229 0 0 chr3 125428344 125428554 -92608604 - MER63A DNA MER1_type 0 210 1 4334 152 51 42 chr3 125429485 125430268 -92606890 - MER54B LTR ERVL -2 791 2 2395 145 30 0 chr3 125431732 125432132 -92605026 - MSTB LTR MaLR -4 422 11 207 69 0 0 chr3 125432193 125432222 -92604936 + (TG)n Simple_repeat Simple_repeat 2 30 0 498 317 55 25 chr3 125432250 125432285 -92604873 + MIR SINE MIR 55 87 -175 2261 82 0 38 chr3 125432285 125432604 -92604554 - AluY SINE Alu -4 307 1 498 317 55 25 chr3 125432604 125432770 -92604388 + MIR SINE MIR 87 262 0 4209 181 23 63 chr3 125433540 125434599 -92602559 + L1 LINE L1 9 1024 -6541 * 11126 184 36 7 chr3 125434595 125437064 -92600094 + L1 LINE L1 3892 6432 -1133 2222 110 7 3 chr3 125437066 125437365 -92599793 + AluSq SINE Alu 1 300 -13 551 309 34 10 chr3 125437493 125437697 -92599461 - MLT1K LTR MaLR -358 230 22 232 276 0 66 chr3 125437903 125437979 -92599179 + L2 LINE L2 3189 3259 -54 335 294 31 69 chr3 125438740 125438900 -92598258 - MIR SINE MIR -71 191 38 230 231 0 19 chr3 125439508 125439560 -92597598 - L2 LINE L2 -9 3304 3254 678 286 68 38 chr3 125439583 125439981 -92597177 - L1ME LINE L1 -334 5787 5378 188 237 0 0 chr3 125441255 125441293 -92595865 + L2 LINE L2 3226 3263 -9 198 222 22 0 chr3 125441424 125441469 -92595689 - MIR3 SINE MIR -3 205 160 25 0 0 0 chr3 125442004 125442029 -92595129 + AT_rich Low_complexity Low_complexity 1 25 0 1646 101 40 11 chr3 125442029 125442305 -92594853 - L1MA1 LINE L1 0 6302 6019 231 325 26 0 chr3 125442309 125442386 -92594772 - L3 LINE CR1 -246 1331 1253 192 326 67 22 chr3 125442391 125442480 -92594678 + L2 LINE L2 2992 3084 -188 180 305 37 49 chr3 125442487 125442569 -92594589 + MER5A DNA MER1_type 10 90 -99 228 310 0 14 chr3 125442824 125442895 -92594263 + L2 LINE L2 3203 3272 0 30 0 0 0 chr3 125442900 125442930 -92594228 + AT_rich Low_complexity Low_complexity 1 30 0 743 65 14 22 chr3 125443283 125443421 -92593737 + (TCTA)n Simple_repeat Simple_repeat 2 138 0 1537 146 77 19 chr3 125443644 125443904 -92593254 - AluJo SINE Alu -17 295 21 671 12 24 0 chr3 125444371 125444454 -92592704 + (AATAG)n Simple_repeat Simple_repeat 3 87 0 2358 90 0 0 chr3 125445262 125445562 -92591596 - AluY SINE Alu -11 300 1 22 0 0 0 chr3 125445569 125445591 -92591567 + AT_rich Low_complexity Low_complexity 1 22 0 198 222 0 0 chr3 125446333 125446387 -92590771 + CT-rich Low_complexity Low_complexity 1 54 0 278 296 59 15 chr3 125446677 125446812 -92590346 + L3b LINE CR1 1258 1398 -185 1027 189 20 76 chr3 125446991 125447340 -92589818 + MER33 DNA MER1_type 1 319 -5 2576 113 54 7 chr3 125447807 125448216 -92588942 + MSTA LTR MaLR 1 428 0 405 278 37 51 chr3 125448289 125448505 -92588653 - MLT1J LTR MaLR -8 503 291 304 222 136 0 chr3 125448644 125448725 -92588433 - MLT1J LTR MaLR -416 95 4 428 256 80 96 chr3 125449794 125450044 -92587114 + MIR SINE MIR 17 262 0 255 260 26 0 chr3 125450142 125450219 -92586939 + CT-rich Low_complexity Low_complexity 2 80 0 318 306 112 8 chr3 125451235 125451369 -92585789 + L2 LINE L2 3123 3270 -2 501 121 0 0 chr3 125454542 125454625 -92582533 + (TGGA)n Simple_repeat Simple_repeat 4 86 0 486 224 47 82 chr3 125456174 125456491 -92580667 - L1ME4a LINE L1 -233 5888 5583 234 0 0 0 chr3 125456503 125456529 -92580629 + (CA)n Simple_repeat Simple_repeat 1 26 0 2549 60 0 10 chr3 125456836 125457150 -92580008 + AluY SINE Alu 1 311 0 377 264 106 5 chr3 125457268 125457476 -92579682 - L1ME4a LINE L1 -1 6120 5892 337 265 119 49 chr3 125457489 125457674 -92579484 - L1ME4a LINE L1 -331 5790 5593 324 0 0 0 chr3 125458454 125458490 -92578668 + (CA)n Simple_repeat Simple_repeat 2 37 0 315 0 0 0 chr3 125458489 125458524 -92578634 + (TC)n Simple_repeat Simple_repeat 1 35 0 * 25 0 0 0 chr3 125458634 125458659 -92578499 + AT_rich Low_complexity Low_complexity 1 25 0 686 275 99 19 chr3 125459669 125459880 -92577278 - MLT1G1 LTR MaLR -23 572 345 492 223 5 154 chr3 125459879 125460013 -92577145 - MER63A DNA MER1_type -1478 210 110 * 2212 85 11 0 chr3 125460013 125460296 -92576862 - AluSg SINE Alu -24 286 1 492 223 5 154 chr3 125460296 125460349 -92576809 - MER63A DNA MER1_type -1578 110 51 763 159 0 0 chr3 125460505 125460618 -92576540 - AluSq/x SINE Alu -200 113 1 811 246 75 44 chr3 125460622 125460915 -92576243 - MLT1G1 LTR MaLR -293 302 1 1447 229 120 36 chr3 125461178 125461754 -92575404 - MLT1E3 LTR MaLR 0 624 1 324 285 20 86 chr3 125461824 125461975 -92575183 + MIR SINE MIR 81 221 -41 203 217 33 33 chr3 125462237 125462297 -92574861 + L2 LINE L2 3213 3272 0 1091 195 0 28 chr3 125463932 125464147 -92573011 - MER3 DNA MER1_type 0 209 1 1604 184 50 0 chr3 125464433 125464716 -92572442 - AluJo SINE Alu -15 297 1 430 314 45 21 chr3 125466410 125466629 -92570529 - MIR SINE MIR -18 244 20 1706 178 4 0 chr3 125467401 125467670 -92569488 - AluJb SINE Alu -36 276 7 6085 40 0 0 chr3 125467680 125468358 -92568800 + L1PA5 LINE L1 5469 6146 -8 1712 157 17 41 chr3 125468396 125468690 -92568468 - AluJo SINE Alu -25 287 1 255 93 0 0 chr3 125469379 125469422 -92567736 + (T)n Simple_repeat Simple_repeat 1 43 0 737 251 73 26 chr3 125469713 125469904 -92567254 + MIR SINE MIR 7 206 -56 3035 56 0 0 chr3 125471008 125471363 -92565795 + L1PA5 LINE L1 5799 6153 -1 21 0 0 0 chr3 125471364 125471385 -92565773 + AT_rich Low_complexity Low_complexity 1 21 0 706 309 60 0 chr3 125471718 125471970 -92565188 - MER102a DNA MER1_type -3 327 61 730 258 47 29 chr3 125471989 125472264 -92564894 + L1MC4a LINE L1 5673 5952 -1856 1444 196 25 79 chr3 125472294 125472698 -92564460 - MLT1B LTR MaLR -7 383 2 434 221 18 6 chr3 125472698 125472861 -92564297 + (TA)n Simple_repeat Simple_repeat 2 166 0 870 189 76 0 chr3 125474359 125474544 -92562614 + L1MD3 LINE L1 7787 7985 -10 22 0 0 0 chr3 125474545 125474567 -92562591 + AT_rich Low_complexity Low_complexity 1 22 0 545 321 153 14 chr3 125475587 125475939 -92561219 + L2 LINE L2 2871 3271 -42 238 184 20 0 chr3 125476602 125476651 -92560507 + Charlie8 DNA MER1_type 2347 2396 -21 258 203 172 0 chr3 125476883 125476947 -92560211 + L2 LINE L2 3232 3306 -7 275 289 55 23 chr3 125476979 125477107 -92560051 + MIR SINE MIR 106 237 -25 1720 246 42 16 chr3 125477545 125477993 -92559165 - MLT1C LTR MaLR 0 467 8 15086 170 58 7 chr3 125478376 125478741 -92558417 - L1PB1 LINE L1 0 6867 6522 381 43 0 0 chr3 125478741 125478788 -92558370 + (TG)n Simple_repeat Simple_repeat 2 48 0 228 35 0 0 chr3 125478787 125478816 -92558342 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 15086 170 58 7 chr3 125478788 125480281 -92556877 - L1PB1 LINE L1 -345 6522 5106 1880 145 53 0 chr3 125480281 125480563 -92556595 - AluSx SINE Alu -15 297 1 15086 170 58 7 chr3 125480563 125485238 -92551920 - L1PB1 LINE L1 -1761 5106 14 23 0 0 0 chr3 125485495 125485518 -92551640 + AT_rich Low_complexity Low_complexity 1 23 0 437 0 19 0 chr3 125485523 125485576 -92551582 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 1808 218 178 28 chr3 125485619 125486114 -92551044 - MLT1E2 LTR MaLR 0 626 58 1430 54 0 0 chr3 125486193 125486379 -92550779 - L1P LINE L1 -789 5357 5172 1026 26 0 0 chr3 125486389 125486504 -92550654 - L1PA3 LINE L1 0 6155 6041 7126 33 1 0 chr3 125486524 125487363 -92549795 + L1PA3 LINE L1 5361 6200 0 898 161 19 0 chr3 125487368 125487529 -92549629 + L1M2 LINE L1 5572 5735 -565 192 77 0 0 chr3 125487530 125487556 -92549602 + (A)n Simple_repeat Simple_repeat 1 26 0 207 273 18 18 chr3 125487575 125487630 -92549528 - MIR SINE MIR -151 111 57 513 291 8 8 chr3 125487632 125487759 -92549399 - L2 LINE L2 0 3313 3187 2446 154 41 14 chr3 125488460 125488875 -92548283 - MSTB LTR MaLR 0 426 1 253 125 31 94 chr3 125490002 125490066 -92547092 - MLT2B1 LTR ERVL 0 520 461 204 226 0 0 chr3 125490080 125490133 -92547025 + (TAAA)n Simple_repeat Simple_repeat 4 56 0 1397 89 0 21 chr3 125490137 125490328 -92546830 - L1P4 LINE L1 -532 5636 5450 1907 114 36 4 chr3 125490328 125490607 -92546551 + L1PA10 LINE L1 5879 6167 -1 32 57 0 0 chr3 125490620 125490673 -92546485 + AT_rich Low_complexity Low_complexity 1 53 0 365 214 19 48 chr3 125491049 125491152 -92546006 + L2 LINE L2 3173 3272 0 230 331 28 36 chr3 125491250 125491361 -92545797 + MIR SINE MIR 36 148 -76 2924 116 0 12 chr3 125491725 125492155 -92545003 - L1PA10 LINE L1 -290 5878 5454 2128 91 14 3 chr3 125492158 125492443 -92544715 + L1PA10 LINE L1 5881 6168 0 2554 50 3 0 chr3 125492599 125492902 -92544256 + AluY SINE Alu 1 304 -7 461 330 110 9 chr3 125492928 125493146 -92544012 - MIR SINE MIR -18 244 5 202 403 42 8 chr3 125494146 125494265 -92542893 - L2 LINE L2 -188 3084 2962 267 54 0 0 chr3 125494410 125494447 -92542711 + (TC)n Simple_repeat Simple_repeat 2 38 0 403 269 76 7 chr3 125545242 125545387 -92491771 + L1MA10 LINE L1 6178 6332 -2 2072 137 101 36 chr3 125545400 125545447 -92491711 + MER4A LTR ERV1 1 43 -422 4451 89 26 0 chr3 125545447 125546066 -92491092 + MER41B LTR ERV1 1 635 0 2072 137 101 36 chr3 125546066 125546581 -92490577 + MER4A LTR ERV1 43 455 -10 315 236 0 19 chr3 125546610 125546716 -92490442 - L1M4 LINE L1 -2191 3955 3852 303 321 80 25 chr3 125546722 125546996 -92490162 - L1MEc LINE L1 -4233 2163 1875 527 265 115 45 chr3 125547027 125547099 -92490059 - L1MEc LINE L1 -4537 1678 1612 1757 151 88 23 chr3 125547099 125547451 -92489707 + THE1C LTR MaLR 1 375 0 527 265 115 45 chr3 125547451 125547992 -92489166 - L1MEc LINE L1 -4603 1612 1062 328 203 14 0 chr3 125547993 125548067 -92489091 + MLT2C2 LTR ERVL 383 457 -7 527 299 111 4 chr3 125548636 125548897 -92488261 + MLT1L LTR MaLR 314 602 -13 1388 251 188 14 chr3 125550164 125550904 -92486254 + L2 LINE L2 2336 3230 -83 3503 144 184 6 chr3 125550904 125551605 -92485553 + LTR1B LTR ERV1 1 826 0 1388 251 188 14 chr3 125551605 125551664 -92485494 + L2 LINE L2 3230 3277 -36 678 229 167 0 chr3 125551689 125551881 -92485277 + MER58A DNA MER1_type 1 224 0 1723 235 29 20 chr3 125551928 125552384 -92484774 + LTR40b LTR ERVL 3 462 0 2225 96 3 7 chr3 125552658 125552978 -92484180 + AluSp SINE Alu 1 313 0 1979 174 0 0 chr3 125553535 125553840 -92483318 + AluJb SINE Alu 3 307 -5 35635 89 6 10 chr3 125553958 125560129 -92477029 - L1PA6 LINE L1 0 6154 11 1838 153 0 20 chr3 125560157 125560458 -92476700 - AluSx SINE Alu -17 295 1 361 318 12 31 chr3 125560473 125560731 -92476427 - L1ME3A LINE L1 -307 5863 5611 2346 194 155 19 chr3 125560958 125561576 -92475582 - MER39 LTR ERV1 0 707 6 21 0 0 0 chr3 125561673 125561694 -92475464 + AT_rich Low_complexity Low_complexity 1 21 0 285 232 131 0 chr3 125562581 125562680 -92474478 + MLT1I LTR MaLR 291 402 -7 809 203 134 67 chr3 125563365 125563720 -92473438 - MER39 LTR ERV1 0 707 176 238 254 0 30 chr3 125563698 125563765 -92473393 - MER39 LTR ERV1 -425 282 218 * 255 278 49 56 chr3 125564452 125564596 -92472562 - MIR SINE MIR -92 170 28 2222 109 10 10 chr3 125564650 125564963 -92472195 - AluSp SINE Alu 0 313 1 343 310 42 61 chr3 125568100 125568361 -92468797 - MLT1K LTR MaLR -142 446 191 989 223 9 23 chr3 125569116 125569336 -92467822 + MER58A DNA MER1_type 4 220 -4 376 273 23 39 chr3 125569463 125569591 -92467567 - MIR3 SINE MIR -6 202 77 492 300 79 7 chr3 125570385 125570525 -92466633 + MIR3 SINE MIR 31 180 -28 185 215 169 31 chr3 125570848 125570895 -92466263 - L2 LINE L2 0 3272 3217 258 372 124 0 chr3 125570895 125571024 -92466134 + MER91A DNA MER1_type 2 146 -50 257 369 19 64 chr3 125571036 125571193 -92465965 - L2 LINE L2 -36 3236 3087 323 321 37 49 chr3 125571846 125572008 -92465150 - L2 LINE L2 -245 3027 2868 633 234 105 36 chr3 125572763 125572961 -92464197 - MIR SINE MIR -40 222 12 359 330 196 25 chr3 125573612 125573979 -92463179 + L2 LINE L2 2518 2947 -367 201 264 16 62 chr3 125575167 125575296 -92461862 + GA-rich Low_complexity Low_complexity 3 125 0 222 191 0 0 chr3 125575768 125575810 -92461348 + GA-rich Low_complexity Low_complexity 2 43 0 356 312 0 4 chr3 125576349 125576514 -92460644 - MIR SINE MIR 0 262 38 2193 117 0 3 chr3 125576640 125576938 -92460220 - AluSx SINE Alu -15 297 1 397 335 75 19 chr3 125578532 125578744 -92458414 + MIR SINE MIR 13 236 -26 22 0 0 0 chr3 125578885 125578907 -92458251 + AT_rich Low_complexity Low_complexity 1 22 0 590 297 77 53 chr3 125579974 125580311 -92456847 - Tigger8 DNA MER2_type 0 666 322 3597 182 31 9 chr3 125581211 125581910 -92455248 - L1MB5 LINE L1 -22 6152 5438 1629 240 112 57 chr3 125582160 125582722 -92454436 + MLT1E LTR MaLR 1 593 0 200 33 0 33 chr3 125583578 125583608 -92453550 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 1130 286 75 16 chr3 125583613 125584183 -92452975 + HAL1b LINE L1 445 1048 -300 1802 162 26 0 chr3 125584917 125585220 -92451938 + AluSx SINE Alu 2 312 0 1102 222 94 116 chr3 125585308 125585824 -92451334 - MLT1F1 LTR MaLR 0 567 64 5501 81 19 41 chr3 125585824 125586675 -92450483 - L1MA1 LINE L1 -6 6296 5465 1102 222 94 116 chr3 125586675 125586734 -92450424 - MLT1F1 LTR MaLR -503 64 5 507 143 31 31 chr3 125587078 125587176 -92449982 + L2 LINE L2 2697 2794 -520 262 83 17 33 chr3 125587257 125587317 -92449841 + (CAAAAA)n Simple_repeat Simple_repeat 2 60 0 1594 126 0 12 chr3 125587323 125587570 -92449588 + AluSg/x SINE Alu 69 312 0 537 183 127 66 chr3 125587827 125588040 -92449118 + LTR45 LTR ERV1 264 525 0 592 294 55 30 chr3 125588042 125588315 -92448843 + L2 LINE L2 2800 3081 -232 510 254 173 15 chr3 125588503 125588700 -92448458 + L2 LINE L2 3086 3313 0 318 292 21 0 chr3 125589957 125590053 -92447105 + MIR SINE MIR 77 174 -88 715 363 74 17 chr3 125590216 125590754 -92446404 + L2 LINE L2 2394 2962 -352 22 56 0 0 chr3 125591642 125591678 -92445480 + AT_rich Low_complexity Low_complexity 1 36 0 893 164 7 13 chr3 125592135 125592287 -92444871 + Tigger1 DNA MER2_type 1 151 -2267 * 983 188 46 0 chr3 125592284 125592481 -92444677 + Tigger1 DNA MER2_type 2213 2418 0 350 331 57 25 chr3 125592547 125592870 -92444288 + L1ME4a LINE L1 4124 4471 -1675 675 245 0 0 chr3 125592962 125593101 -92444057 + MER82 DNA MER2_type 3 141 -512 1911 213 82 53 chr3 125593118 125593724 -92443434 - LTR48B LTR ERV1 -20 624 1 2293 202 56 6 chr3 125593724 125594210 -92442948 + MER82 DNA MER2_type 138 647 -6 791 259 77 23 chr3 125595104 125595324 -92441834 + MIR SINE MIR 28 259 -3 776 263 47 55 chr3 125595342 125595722 -92441436 + L1ME4a LINE L1 5539 5915 -206 389 264 0 88 chr3 125595797 125595956 -92441202 + L2 LINE L2 3169 3313 0 195 204 0 0 chr3 125597395 125597439 -92439719 + GA-rich Low_complexity Low_complexity 1 44 0 4256 115 11 0 chr3 125597667 125598293 -92438865 - MER41B LTR ERV1 0 635 3 1488 178 135 7 chr3 125598368 125598672 -92438486 - MER61A LTR ERV1 0 343 1 292 336 84 0 chr3 125599610 125599753 -92437405 - MIR3 SINE MIR 0 208 54 185 297 31 31 chr3 125599755 125599819 -92437339 - MIR SINE MIR -129 79 16 308 276 184 31 chr3 125600146 125600309 -92436849 - MIR3 SINE MIR -3 205 18 2079 235 48 61 chr3 125600474 125601260 -92435898 - L1ME3 LINE L1 -13 6149 5374 2006 122 4 4 chr3 125601292 125601616 -92435542 + AluSc SINE Alu 2 325 0 431 301 22 9 chr3 125601626 125601852 -92435306 - L1ME3 LINE L1 -923 5223 4995 231 273 0 0 chr3 125601891 125601946 -92435212 - MER5B DNA MER1_type -123 55 1 217 333 188 0 chr3 125601958 125602150 -92435008 + MIR SINE MIR 32 259 -3 393 320 16 0 chr3 125602938 125603063 -92434095 - LTR16C LTR ERVL -11 480 354 1620 158 28 21 chr3 125603095 125603380 -92433778 + MLT1B LTR MaLR 104 390 0 952 242 55 58 chr3 125604912 125605276 -92431882 + MLT1A1 LTR MaLR 1 363 -2 7198 222 40 31 chr3 125605278 125606997 -92430161 + MLT1A1-int LTR MaLR 1 1735 0 975 228 101 49 chr3 125606997 125607343 -92429815 + MLT1A1 LTR MaLR 1 364 -1 242 204 29 32 chr3 125608138 125608238 -92428920 - MIR3 SINE MIR -1 207 76 206 299 65 19 chr3 125608894 125609001 -92428157 + L2 LINE L2 2791 2902 -412 1988 173 79 22 chr3 125609352 125609757 -92427401 + MSTA LTR MaLR 1 428 0 1834 152 11 0 chr3 125610403 125610679 -92426479 + AluSx SINE Alu 1 279 -33 21 36 0 0 chr3 125611034 125611062 -92426096 + AT_rich Low_complexity Low_complexity 1 28 0 1103 300 72 56 chr3 125611206 125611340 -92425818 - L2 LINE L2 0 3313 3183 303 28 0 0 chr3 125611340 125611376 -92425782 + (TG)n Simple_repeat Simple_repeat 1 36 0 1103 300 72 56 chr3 125611376 125611916 -92425242 - L2 LINE L2 -130 3183 2622 1223 207 56 22 chr3 125611918 125612186 -92424972 - MLT1D LTR MaLR -2 503 227 2266 173 25 8 chr3 125612186 125612585 -92424573 + MSTB LTR MaLR 1 406 -20 1008 162 70 57 chr3 125612622 125612850 -92424308 - MLT1D LTR MaLR -274 231 1 702 250 29 6 chr3 125612850 125613022 -92424136 - L2 LINE L2 -688 2626 2451 352 340 20 0 chr3 125613041 125613141 -92424017 + L2 LINE L2 3155 3256 -16 428 293 66 33 chr3 125613358 125613692 -92423466 - L1ME4a LINE L1 -259 5862 5518 27 29 0 0 chr3 125613912 125613946 -92423212 + AT_rich Low_complexity Low_complexity 1 34 0 26484 95 9 5 chr3 125614241 125618915 -92418243 - L1PA7 LINE L1 -1 6153 1465 22 0 0 0 chr3 125619353 125619375 -92417783 + AT_rich Low_complexity Low_complexity 1 22 0 231 292 67 34 chr3 125619702 125619791 -92417367 + L2 LINE L2 2550 2641 -673 1988 199 84 0 chr3 125619815 125620208 -92416950 + MSTB LTR MaLR 1 426 0 187 311 5 100 chr3 125620354 125620544 -92416614 + L2 LINE L2 3142 3313 0 347 222 11 33 chr3 125620714 125620804 -92416354 - MIR SINE MIR -55 207 120 11357 213 19 26 chr3 125621365 125623662 -92413496 + L1PA11 LINE L1 1 2311 -5273 1733 145 66 41 chr3 125623662 125624028 -92413130 - THE1C LTR MaLR 0 375 1 11357 213 19 26 chr3 125624028 125625837 -92411321 + L1PA11 LINE L1 2311 4884 -2700 8646 153 24 0 chr3 125625840 125628111 -92409047 + L1PA11 LINE L1 5288 7604 -8 450 53 0 0 chr3 125628115 125628172 -92408986 + (CA)n Simple_repeat Simple_repeat 2 58 0 397 309 16 8 chr3 125628448 125628571 -92408587 - L2 LINE L2 0 3313 3190 435 274 80 35 chr3 125628573 125628747 -92408411 - MER112 DNA MER1_type -7 253 65 2494 108 8 16 chr3 125628747 125629125 -92408033 + THE1C LTR MaLR 1 375 0 435 274 80 35 chr3 125629125 125629176 -92407982 - MER112 DNA MER1_type -195 65 18 452 276 145 18 chr3 125629224 125629445 -92407713 - MIR SINE MIR -1 261 13 209 338 28 0 chr3 125629886 125629957 -92407201 + MIR SINE MIR 51 123 -139 270 372 9 9 chr3 125630086 125630199 -92406959 - MER5B DNA MER1_type -5 173 61 2279 112 9 3 chr3 125631248 125631578 -92405580 + THE1A LTR MaLR 1 332 -23 954 208 52 24 chr3 125631587 125631675 -92405483 - MER20 DNA MER1_type 0 219 135 3400 167 49 64 chr3 125631675 125632472 -92404686 + LTR1 LTR ERV1 1 785 0 954 208 52 24 chr3 125632472 125632595 -92404563 - MER20 DNA MER1_type -84 135 2 265 125 0 0 chr3 125633389 125633429 -92403729 + MER67A LTR ERV1 10 49 -494 769 130 30 8 chr3 125633429 125633560 -92403598 - MER54B LTR ERVL 0 793 660 21 0 0 0 chr3 125633877 125633898 -92403260 + AT_rich Low_complexity Low_complexity 1 21 0 494 222 10 0 chr3 125634021 125634120 -92403038 - MER69A DNA AcHobo -77 100 1 1430 202 16 0 chr3 125634615 125634873 -92402285 - AluJb SINE Alu -33 279 18 26 64 0 0 chr3 125635481 125635528 -92401630 + AT_rich Low_complexity Low_complexity 1 47 0 315 0 0 0 chr3 125637447 125637482 -92399676 + (CA)n Simple_repeat Simple_repeat 2 36 0 324 127 0 0 chr3 125638261 125638316 -92398842 + (GA)n Simple_repeat Simple_repeat 2 56 0 25 51 0 0 chr3 125638915 125638954 -92398204 + AT_rich Low_complexity Low_complexity 1 39 0 614 37 0 0 chr3 125639489 125639571 -92397587 - L1PA2 LINE L1 0 6155 6074 215 291 47 12 chr3 125641863 125641949 -92395209 - MIR SINE MIR -17 245 157 476 227 62 23 chr3 125641952 125642128 -92395030 - MER69 DNA AcHobo -65 2461 2279 * 3908 267 28 25 chr3 125642125 125643249 -92393909 - MER69 DNA AcHobo -1399 1127 1 4158 36 2 0 chr3 125643416 125643915 -92393243 - L1PA3 LINE L1 -2 6153 5654 627 251 12 12 chr3 125644253 125644420 -92392738 - MIR SINE MIR 0 262 96 358 306 60 30 chr3 125644713 125644912 -92392246 + HAL1 LINE L1 188 392 -2115 4506 176 13 29 chr3 125644965 125645919 -92391239 + L1PA15 LINE L1 4377 5317 -848 2180 115 23 0 chr3 125645919 125646223 -92390935 + AluSx SINE Alu 1 311 -1 4506 176 13 29 chr3 125646223 125646546 -92390612 + L1PA15 LINE L1 5317 5644 -521 652 219 0 5 chr3 125646543 125646725 -92390433 + L1M LINE L1 5173 5350 -816 * 1488 136 6 9 chr3 125646738 125647080 -92390078 + L1PA15 LINE L1 5644 6150 -15 2263 230 49 36 chr3 125647206 125647745 -92389413 - L1MC4a LINE L1 -1697 6111 5560 2218 102 0 3 chr3 125647745 125648038 -92389120 + AluSg SINE Alu 2 293 -17 2263 230 49 36 chr3 125648038 125648188 -92388970 - L1MC4a LINE L1 -2248 5560 5413 1362 177 90 8 chr3 125648188 125648454 -92388704 - AluJb SINE Alu -13 299 12 529 233 32 14 chr3 125648463 125648684 -92388474 - L1MC4a LINE L1 -814 5332 5191 31 0 0 0 chr3 125648686 125648717 -92388441 + AT_rich Low_complexity Low_complexity 1 31 0 1675 193 0 10 chr3 125648822 125649123 -92388035 + AluJb SINE Alu 15 312 0 328 343 46 11 chr3 125649223 125649506 -92387652 - L1MC4a LINE L1 -1124 5022 4730 1069 98 0 0 chr3 125650408 125650551 -92386607 - AluSg/x SINE Alu -12 298 156 3372 235 23 25 chr3 125651134 125652363 -92384795 - L1MB7 LINE L1 -30 6154 4922 * 5440 153 38 14 chr3 125652333 125653547 -92383611 - L1MA4 LINE L1 -3 6297 5060 4403 211 29 11 chr3 125653540 125654452 -92382706 - L1M3f LINE L1 -4400 928 1 * 2393 254 34 14 chr3 125654453 125655393 -92381765 - L1MB7 LINE L1 -2221 3925 2967 1554 293 78 20 chr3 125655500 125656036 -92381122 - Zaphod DNA AcHobo -3451 580 14 211 180 0 33 chr3 125656569 125656630 -92380528 + A-rich Low_complexity Low_complexity 5 63 0 988 205 52 5 chr3 125657112 125657322 -92379836 - MLT1A1 LTR MaLR 0 365 146 705 128 0 18 chr3 125657366 125657475 -92379683 + THE1C LTR MaLR 2 108 -267 5777 118 4 6 chr3 125657475 125658306 -92378852 + THE1C-int LTR MaLR 752 1580 0 2427 106 27 8 chr3 125658306 125658674 -92378484 + THE1C LTR MaLR 1 375 0 14030 177 27 5 chr3 125658679 125661192 -92375966 - L1MA3 LINE L1 -53 7671 5214 297 0 0 0 chr3 125661192 125661225 -92375933 + (TA)n Simple_repeat Simple_repeat 2 34 0 14030 177 27 5 chr3 125661225 125665061 -92372097 - L1MA3 LINE L1 -2510 5214 1187 785 128 121 0 chr3 125665076 125665217 -92371941 - MLT1A1 LTR MaLR -207 158 1 649 173 93 20 chr3 125665241 125665391 -92371767 + MIR SINE MIR 102 262 0 3977 223 56 21 chr3 125665522 125666707 -92370451 + L1MB2 LINE L1 4256 5398 -773 1874 153 49 33 chr3 125666707 125667074 -92370084 - THE1C LTR MaLR -2 373 1 3977 223 56 21 chr3 125667074 125667385 -92369773 + L1MB2 LINE L1 5398 5697 -474 189 0 0 0 chr3 125667385 125667406 -92369752 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 342 67 0 0 chr3 125667405 125667450 -92369708 + (CA)n Simple_repeat Simple_repeat 2 46 0 3977 223 56 21 chr3 125667406 125667798 -92369360 + L1MB2 LINE L1 5697 6170 -1 372 291 9 9 chr3 125668369 125668479 -92368679 + L2 LINE L2 3201 3310 -3 1913 119 61 4 chr3 125669270 125669548 -92367610 + AluSq SINE Alu 1 294 -19 471 319 92 35 chr3 125671275 125671755 -92365403 + L1MEd LINE L1 642 1148 -4971 406 152 0 0 chr3 125672640 125672706 -92364452 + MLT2C1 LTR ERVL 332 397 0 300 316 90 42 chr3 125672795 125673007 -92364151 + L2 LINE L2 2497 2718 -596 334 296 40 16 chr3 125673396 125673521 -92363637 + L2 LINE L2 3180 3307 -6 1208 345 114 22 chr3 125674191 125675203 -92361955 - L3 LINE CR1 -23 1554 450 28 79 0 0 chr3 125675213 125675276 -92361882 + AT_rich Low_complexity Low_complexity 1 63 0 433 304 92 32 chr3 125675335 125675585 -92361573 - MLT1K LTR MaLR -149 439 175 1908 206 81 107 chr3 125675794 125675986 -92361172 - L1MC5 LINE L1 -36 7925 7730 1884 172 36 3 chr3 125675986 125676323 -92360835 - MER7A DNA MER2_type 0 346 1 1908 206 81 107 chr3 125676323 125677290 -92359868 - L1MC5 LINE L1 -231 7730 6796 751 192 0 0 chr3 125677314 125677439 -92359719 + AluJb SINE Alu 1 125 -187 366 276 94 8 chr3 125677473 125677600 -92359558 - L1MC4a LINE L1 -1056 6752 6615 349 376 41 9 chr3 125678381 125678602 -92358556 - HAL1b LINE L1 -440 908 681 335 271 69 76 chr3 125678826 125679255 -92357903 - HAL1b LINE L1 -962 3306 6 2534 52 7 0 chr3 125679488 125679794 -92357364 + AluY SINE Alu 2 309 -2 23 0 0 0 chr3 125680027 125680050 -92357108 + AT_rich Low_complexity Low_complexity 1 23 0 205 191 75 0 chr3 125680867 125680961 -92356197 + (TA)n Simple_repeat Simple_repeat 2 102 0 23 33 0 0 chr3 125680967 125680997 -92356161 + AT_rich Low_complexity Low_complexity 1 30 0 285 29 0 0 chr3 125682890 125682924 -92354234 + (A)n Simple_repeat Simple_repeat 1 34 0 3546 242 77 20 chr3 125683479 125684998 -92352160 - L1MC/D LINE L1 -611 6025 4419 1415 96 8 2 chr3 125684999 125685214 -92351944 + L1MA1 LINE L1 6074 6291 0 3343 259 71 33 chr3 125685234 125685290 -92351868 - L1MDa LINE L1 -2116 4424 4372 2497 56 0 0 chr3 125685290 125685592 -92351566 + AluY SINE Alu 1 302 -9 3343 259 71 33 chr3 125685592 125686564 -92350594 - L1MDa LINE L1 -2168 4372 3438 1953 196 18 8 chr3 125686564 125686946 -92350212 - MLT1B LTR MaLR -3 387 2 3343 259 71 33 chr3 125686946 125687886 -92349272 - L1MDa LINE L1 -3102 3438 2381 1503 188 24 106 chr3 125687894 125688308 -92348850 - MSTD LTR MaLR -4 392 13 5167 194 41 18 chr3 125688336 125689603 -92347555 - L1MDa LINE L1 -4174 2366 1071 183 156 0 0 chr3 125689605 125689637 -92347521 + (TA)n Simple_repeat Simple_repeat 1 32 0 804 184 0 0 chr3 125689641 125689766 -92347392 - FLAM_C SINE Alu -18 125 1 1439 267 82 59 chr3 125689766 125690555 -92346603 - L1MDa LINE L1 -5461 1079 112 515 308 22 0 chr3 125690550 125690735 -92346423 - L1MC4 LINE L1 -568 7474 7286 * 993 304 19 13 chr3 125690760 125691135 -92346023 + L1MC4a LINE L1 5506 5882 -1926 432 261 104 76 chr3 125691831 125691891 -92345267 + MIR SINE MIR 30 87 -175 2582 107 3 0 chr3 125691891 125692245 -92344913 - THE1A LTR MaLR 0 355 1 11843 88 1 2 chr3 125692245 125693827 -92343331 - THE1A-int LTR MaLR 0 1580 1 2704 80 6 0 chr3 125693827 125694176 -92342982 - THE1A LTR MaLR 0 355 5 432 261 104 76 chr3 125694176 125694324 -92342834 + MIR SINE MIR 86 246 -16 207 197 0 49 chr3 125694326 125694387 -92342771 + CT-rich Low_complexity Low_complexity 2 59 0 212 196 0 18 chr3 125694411 125694467 -92342691 + CT-rich Low_complexity Low_complexity 1 55 0 22 35 0 0 chr3 125695955 125695984 -92341174 + AT_rich Low_complexity Low_complexity 1 29 0 234 221 150 79 chr3 125696763 125696963 -92340195 + MIR3 SINE MIR 2 201 -61 215 353 59 17 chr3 125697044 125697163 -92339995 - L2 LINE L2 -658 2656 2533 293 323 16 32 chr3 125697406 125697530 -92339628 - L2 LINE L2 -1007 2307 2186 1412 231 56 108 chr3 125698942 125699518 -92337640 - MER77 LTR ERV1 -6 599 54 200 271 0 29 chr3 125699732 125699802 -92337356 + GA-rich Low_complexity Low_complexity 3 70 0 500 250 49 157 chr3 125700797 125700884 -92336274 + L1ME3A LINE L1 5741 5836 -334 1361 163 101 46 chr3 125700884 125701210 -92335948 + MER2 DNA MER2_type 1 344 0 500 250 49 157 chr3 125701210 125701594 -92335564 + L1ME3A LINE L1 5836 6161 -9 291 20 78 0 chr3 125703361 125703412 -92333746 + CT-rich Low_complexity Low_complexity 2 56 0 2922 132 13 61 chr3 125703560 125704115 -92333043 + L1P5 LINE L1 5264 5791 -365 248 200 19 71 chr3 125704101 125704227 -92332931 + L1MC4 LINE L1 2006 6985 -1337 * 21 36 0 0 chr3 125704566 125704594 -92332564 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr3 125705129 125705169 -92331989 + AT_rich Low_complexity Low_complexity 1 40 0 2517 302 29 47 chr3 125705759 125706712 -92330446 + L1M4b LINE L1 -562 373 -5911 769 271 65 30 chr3 125706799 125707389 -92329769 + L1M4b LINE L1 1404 2112 -4451 28 48 0 0 chr3 125707418 125707460 -92329698 + AT_rich Low_complexity Low_complexity 1 42 0 308 304 6 89 chr3 125707587 125707745 -92329413 + L1M4b LINE L1 2021 2165 -4219 33 43 0 0 chr3 125707756 125707803 -92329355 + AT_rich Low_complexity Low_complexity 1 47 0 412 242 65 96 chr3 125707828 125708250 -92328908 + L1M4b LINE L1 2281 2691 -3691 1620 187 79 23 chr3 125708252 125708605 -92328553 + THE1C LTR MaLR 3 375 0 1352 254 18 22 chr3 125708605 125708874 -92328284 + L1M4b LINE L1 2689 2957 -3425 1846 148 77 14 chr3 125708874 125709027 -92328131 + THE1C LTR MaLR 2 144 -231 1904 159 0 3 chr3 125709027 125709328 -92327830 - AluSx SINE Alu -12 300 1 1846 148 77 14 chr3 125709328 125709526 -92327632 + THE1C LTR MaLR 144 375 0 1352 254 18 22 chr3 125709526 125709709 -92327449 + L1M4b LINE L1 2957 3139 -3243 5146 264 46 14 chr3 125709720 125710393 -92326765 + L1M4b LINE L1 3200 3850 -2532 2192 154 8 6 chr3 125710393 125710756 -92326402 + THE1B LTR MaLR 1 364 0 5146 264 46 14 chr3 125710756 125712003 -92325155 + L1M4b LINE L1 3850 5292 -1090 2234 68 0 11 chr3 125712003 125712281 -92324877 + AluY SINE Alu 21 295 -16 5146 264 46 14 chr3 125712281 125712506 -92324652 + L1M4b LINE L1 5292 5508 -874 2945 109 5 5 chr3 125712522 125712935 -92324223 + MLT2A1 LTR ERVL 1 413 -31 216 0 0 0 chr3 125712935 125712959 -92324199 + (TG)n Simple_repeat Simple_repeat 2 25 0 328 146 0 0 chr3 125712980 125713035 -92324123 + MLT2A1 LTR ERVL 390 444 0 26963 89 11 2 chr3 125713035 125716643 -92320515 + HERVL-A1 LTR ERVL 1 3641 -2013 545 16 0 0 chr3 125716902 125716963 -92320195 - L1PA5 LINE L1 -265 5889 5829 1327 31 0 0 chr3 125716963 125717120 -92320038 + L1PA4 LINE L1 5997 6155 0 298 316 44 15 chr3 125717121 125717257 -92319901 + HERVL-A1 LTR ERVL 4808 4947 -707 425 298 156 0 chr3 125717333 125717474 -92319684 + LTR16A LTR ERVL 286 448 -2 432 257 70 19 chr3 125717477 125717691 -92319467 - L1MEc LINE L1 -1491 4724 4500 1023 285 95 34 chr3 125717910 125719175 -92317983 - L1MEc LINE L1 -2695 3520 2179 21 36 0 0 chr3 125719268 125719296 -92317862 + AT_rich Low_complexity Low_complexity 1 28 0 867 180 167 68 chr3 125719329 125719366 -92317792 - MER33 DNA MER1_type -2261 324 292 1419 180 118 7 chr3 125719366 125719638 -92317520 + AluJb SINE Alu 1 302 0 867 180 167 68 chr3 125719638 125719894 -92317264 - MER33 DNA MER1_type -2293 292 2 492 307 48 35 chr3 125720131 125720708 -92316450 - L1MEc LINE L1 -4580 1816 1232 246 304 12 94 chr3 125721086 125721257 -92315901 + LTR16A1 LTR ERVL 299 455 -2 21 57 0 0 chr3 125721966 125722001 -92315157 + AT_rich Low_complexity Low_complexity 1 35 0 835 284 122 67 chr3 125722440 125723508 -92313650 + HAL1 LINE L1 1382 2507 0 22 35 0 0 chr3 125724999 125725028 -92312130 + AT_rich Low_complexity Low_complexity 1 29 0 1824 183 24 3 chr3 125725203 125725575 -92311583 + L1MA3 LINE L1 5926 6305 0 1112 219 4 4 chr3 125726095 125726337 -92310821 + MER33 DNA MER1_type 10 251 -73 579 248 21 7 chr3 125726337 125726482 -92310676 + L1MC3 LINE L1 5616 5762 -2280 276 125 21 0 chr3 125726468 125726516 -92310642 + MSTB-int LTR MaLR 1603 1651 0 * 2180 178 36 10 chr3 125726517 125726932 -92310226 + MSTB LTR MaLR 1 426 0 1238 229 123 26 chr3 125726932 125727356 -92309802 + L1MC3 LINE L1 5907 6371 -1414 5384 208 60 11 chr3 125727388 125728634 -92308524 + L1MC3 LINE L1 6473 7779 -6 388 291 80 64 chr3 125728636 125729076 -92308082 + L1MC4a LINE L1 5811 6257 -1551 1979 211 10 5 chr3 125729246 125729634 -92307524 - MER74C LTR ERVL -1 459 70 991 254 122 65 chr3 125729810 125730392 -92306766 + L1MC5 LINE L1 6612 7226 -735 369 261 92 7 chr3 125730544 125730697 -92306461 + L1MC5 LINE L1 7304 7469 -492 1650 305 65 62 chr3 125730743 125732134 -92305024 + L1M3a LINE L1 15 1099 -4856 * 7630 209 25 8 chr3 125732131 125733634 -92303524 + L1M1 LINE L1 23 1550 -6015 4286 134 13 12 chr3 125733644 125734412 -92302746 + L1M1 LINE L1 2554 3322 -4243 2454 81 0 0 chr3 125734430 125734740 -92302418 + AluY SINE Alu 1 310 -1 1325 221 10 53 chr3 125734741 125734792 -92302366 + L1M1 LINE L1 4642 4694 -2871 7587 28 1 0 chr3 125734792 125736131 -92301027 + L1PA3 LINE L1 4813 6152 -3 1325 221 10 53 chr3 125736131 125736490 -92300668 + L1M1 LINE L1 4694 5034 -2531 * 5715 189 11 22 chr3 125736487 125736738 -92300420 + L1M1 LINE L1 5558 5810 -1755 2446 63 7 0 chr3 125736738 125737039 -92300119 + AluY SINE Alu 3 305 -6 1931 144 0 7 chr3 125737049 125737348 -92299810 + AluSx SINE Alu 3 299 -13 5715 189 11 22 chr3 125737348 125738326 -92298832 + L1M1 LINE L1 5819 6784 -781 14826 130 11 68 chr3 125738354 125739945 -92297213 - L1P LINE L1 -3075 3071 1712 2616 35 0 6 chr3 125739945 125740258 -92296900 - AluY SINE Alu 0 311 1 14826 130 11 68 chr3 125740258 125741513 -92295645 - L1P LINE L1 -4434 1712 387 8296 94 8 3 chr3 125741557 125743590 -92293568 + L1PA7 LINE L1 4131 6154 0 1811 255 30 35 chr3 125743590 125744285 -92292873 + L1M3a LINE L1 1082 1763 -4272 5193 221 36 56 chr3 125744285 125747061 -92290097 + L1MA9 LINE L1 3022 5853 -1878 1225 179 77 13 chr3 125747061 125747295 -92289863 - AluJo SINE Alu -53 259 11 5193 221 36 56 chr3 125747295 125747754 -92289404 + L1MA9 LINE L1 5853 6320 -1411 950 70 78 0 chr3 125747754 125747883 -92289275 + MER85 DNA T2_type 1 139 0 5193 221 36 56 chr3 125747883 125749523 -92287635 + L1MA9 LINE L1 6320 7731 0 563 79 0 0 chr3 125749645 125749721 -92287437 + MADE1 DNA Mariner 4 79 -1 366 244 37 24 chr3 125749754 125749918 -92287240 + L1MC5 LINE L1 7618 7783 -178 320 124 22 34 chr3 125749942 125750031 -92287127 + (TAGA)n Simple_repeat Simple_repeat 4 91 0 253 241 11 46 chr3 125750506 125750593 -92286565 - MLT1I LTR MaLR -17 392 309 331 352 28 45 chr3 125750655 125750831 -92286327 - MLT1I LTR MaLR -136 273 101 1828 157 35 35 chr3 125750831 125751206 -92285952 + THE1C LTR MaLR 1 375 0 5932 138 5 51 chr3 125751207 125752248 -92284910 + THE1C-int LTR MaLR 2 994 -586 745 170 26 20 chr3 125752234 125752387 -92284771 - THE1-int LTR MaLR -261 1319 1166 * 282 311 52 15 chr3 125752588 125752723 -92284435 - HERVL LTR ERVL -707 4947 4808 653 196 6 0 chr3 125752724 125752882 -92284276 - L1PA4 LINE L1 0 6155 5997 439 85 0 0 chr3 125752882 125752941 -92284217 + L1PA4 LINE L1 5831 5889 -266 575 333 19 36 chr3 125753349 125753658 -92283500 - HERVL LTR ERVL -1362 4402 4099 1372 164 14 58 chr3 125753825 125754100 -92283058 - MER2 DNA MER2_type -80 265 3 22 0 0 0 chr3 125755072 125755094 -92282064 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr3 125755662 125755693 -92281465 + AT_rich Low_complexity Low_complexity 1 31 0 1723 213 6 3 chr3 125756151 125756498 -92280660 - MER7A DNA MER2_type 0 346 1 273 297 125 30 chr3 125756773 125757309 -92279849 + L1ME LINE L1 2501 3087 -3128 1611 266 113 61 chr3 125757327 125758393 -92278765 + L1ME1 LINE L1 16 1136 -5260 255 302 52 35 chr3 125758413 125758585 -92278573 + L1ME1 LINE L1 1166 1340 -4875 6623 229 17 11 chr3 125758684 125760296 -92276862 + L1 LINE L1 3510 5130 -1016 1503 266 78 30 chr3 125760308 125761030 -92276128 + L1ME1 LINE L1 3785 4540 -1675 421 244 0 0 chr3 125761030 125761108 -92276050 + Tigger5 DNA MER2_type 2 79 -2244 2312 254 74 25 chr3 125761320 125762884 -92274274 + L1ME1 LINE L1 4539 6188 -47 308 348 88 14 chr3 125762934 125763230 -92273928 + L1ME LINE L1 3158 3475 -2740 419 315 55 38 chr3 125763533 125763984 -92273174 + L1ME LINE L1 3951 4409 -1806 1191 238 20 33 chr3 125763984 125764283 -92272875 - LTR40a LTR ERVL -224 295 1 284 272 122 7 chr3 125764417 125764564 -92272594 + L1ME LINE L1 5700 5863 -368 245 299 0 0 chr3 125764592 125764659 -92272499 - MIR SINE MIR 0 262 196 269 317 0 20 chr3 125765454 125765555 -92271603 + CT-rich Low_complexity Low_complexity 4 102 0 3052 37 19 0 chr3 125765573 125765947 -92271211 - L1PA5 LINE L1 -8 6146 5766 267 371 68 77 chr3 125766333 125766775 -92270383 - L2 LINE L2 -8 3264 2827 1228 179 40 71 chr3 125766820 125767117 -92270041 - AluJb SINE Alu -14 298 11 188 274 39 0 chr3 125767179 125767230 -92269928 + L2 LINE L2 3175 3227 -86 773 226 0 0 chr3 125767243 125767389 -92269769 - FRAM SINE Alu -30 146 1 249 318 68 0 chr3 125767403 125767491 -92269667 + L2 LINE L2 3220 3313 0 234 0 0 0 chr3 125768896 125768922 -92268236 + (T)n Simple_repeat Simple_repeat 1 26 0 293 321 38 63 chr3 125770159 125770341 -92266817 + MER5A DNA MER1_type 1 189 0 247 370 131 34 chr3 125770817 125771284 -92265874 - L2 LINE L2 -572 2742 2231 257 224 17 0 chr3 125771925 125771983 -92265175 + L2 LINE L2 3210 3268 -4 320 247 0 0 chr3 125775254 125775331 -92261827 + MIR SINE MIR 65 141 -121 240 179 0 0 chr3 125775331 125775370 -92261788 + L1 LINE L1 3512 3550 -2596 420 220 127 8 chr3 125775370 125775488 -92261670 + MIR SINE MIR 129 260 -2 235 286 102 31 chr3 125775908 125776006 -92261152 + L3b LINE CR1 1328 1432 -151 1783 194 40 35 chr3 125776348 125776720 -92260438 + MLT1A2 LTR MaLR 1 374 0 244 308 15 30 chr3 125776724 125776857 -92260301 + MER5B DNA MER1_type 48 178 0 320 328 47 23 chr3 125777085 125777213 -92259945 + MIR SINE MIR 61 191 -71 361 289 178 7 chr3 125778238 125778390 -92258768 - MER5A DNA MER1_type -6 183 6 497 272 184 7 chr3 125778452 125778599 -92258559 - MER5B DNA MER1_type 0 178 6 789 147 85 57 chr3 125778628 125778805 -92258353 + MER5A DNA MER1_type 4 185 -4 329 301 75 0 chr3 125779217 125779310 -92257848 - L2 LINE L2 0 3272 3173 332 365 34 11 chr3 125779376 125779554 -92257604 - L2 LINE L2 -14 3299 3118 344 265 215 53 chr3 125779666 125779842 -92257316 + MIR SINE MIR 27 231 -31 4279 128 52 41 chr3 125779941 125781342 -92255816 - pTR5 LTR ERV1 0 2438 741 626 239 43 16 chr3 125781852 125782036 -92255122 - MIR SINE MIR 0 262 74 211 200 0 0 chr3 125782160 125782205 -92254953 + CT-rich Low_complexity Low_complexity 2 46 0 529 311 26 35 chr3 125783399 125783627 -92253531 + MIR SINE MIR 21 246 -16 25 65 0 0 chr3 125783760 125783806 -92253352 + AT_rich Low_complexity Low_complexity 1 46 0 865 307 32 55 chr3 125783911 125784380 -92252778 + L1M3b LINE L1 1216 1673 -5823 1116 294 26 22 chr3 125784389 125784844 -92252314 + L1M3b LINE L1 1896 2352 -5213 2142 246 31 18 chr3 125784854 125785532 -92251626 + L1M3b LINE L1 2647 3333 -4232 679 331 86 18 chr3 125785737 125786282 -92250876 + L2 LINE L2 2667 3246 -67 27 0 0 0 chr3 125786471 125786498 -92250660 + AT_rich Low_complexity Low_complexity 1 27 0 22 70 0 0 chr3 125786574 125786617 -92250541 + AT_rich Low_complexity Low_complexity 1 43 0 509 321 52 38 chr3 125786690 125787135 -92250023 - L1ME3A LINE L1 -277 5885 5435 299 282 0 0 chr3 125787699 125787784 -92249374 + L1MC4 LINE L1 6507 6591 -1451 396 372 39 36 chr3 125788610 125788919 -92248239 - HAL1 LINE L1 -686 1821 1512 351 261 43 72 chr3 125789182 125789277 -92247881 + MER112 DNA MER1_type 121 212 -48 1392 228 43 14 chr3 125789277 125789628 -92247530 - MLT1A1 LTR MaLR -4 361 1 351 261 43 72 chr3 125789628 125789670 -92247488 + MER112 DNA MER1_type 212 254 -6 320 257 18 9 chr3 125789832 125789945 -92247213 - HAL1 LINE L1 -1404 1103 990 1625 192 94 21 chr3 125789952 125790437 -92246721 - L1MB7 LINE L1 -13 6167 5623 1550 137 29 67 chr3 125790437 125790752 -92246406 - THE1B LTR MaLR 0 364 62 8207 92 12 15 chr3 125790869 125792881 -92244277 - L1PA7 LINE L1 -22 6132 4131 9019 101 3 2 chr3 125792881 125794181 -92242977 + L1P3 LINE L1 526 1806 -4645 2474 56 7 3 chr3 125794181 125794486 -92242672 + AluY SINE Alu 1 306 -5 23 0 0 0 chr3 125794719 125794742 -92242416 + AT_rich Low_complexity Low_complexity 1 23 0 33 73 0 0 chr3 125795560 125795628 -92241530 + AT_rich Low_complexity Low_complexity 1 68 0 3333 109 14 10 chr3 125795906 125796399 -92240759 + THE1C-int LTR MaLR 1082 1576 -4 1899 142 40 35 chr3 125796403 125796776 -92240382 + THE1C LTR MaLR 1 375 0 659 180 0 105 chr3 125797297 125797469 -92239689 + L1M4 LINE L1 1 154 -6876 682 203 46 124 chr3 125797475 125797781 -92239377 + L1M4 LINE L1 297 578 -6452 476 126 0 11 chr3 125797781 125797868 -92239290 + L1MA8 LINE L1 6205 6290 -1 24 32 0 0 chr3 125798005 125798036 -92239122 + AT_rich Low_complexity Low_complexity 1 31 0 500 290 72 50 chr3 125798630 125798992 -92238166 + MLT1J LTR MaLR 101 470 -41 318 307 142 10 chr3 125799060 125799265 -92237893 + L1M4 LINE L1 3964 4195 -2911 202 175 0 88 chr3 125799850 125799907 -92237251 + MIR SINE MIR 198 249 -13 333 330 82 19 chr3 125802293 125802563 -92234595 + L2 LINE L2 2140 2426 -888 287 373 33 24 chr3 125802896 125803108 -92234050 + L2 LINE L2 2841 3054 -218 24 53 0 0 chr3 125805062 125805100 -92232058 + AT_rich Low_complexity Low_complexity 1 38 0 660 305 43 50 chr3 125805292 125805895 -92231263 - L1MC4a LINE L1 -1899 5909 5311 1436 212 62 69 chr3 125806570 125807112 -92230046 - L1PA8A LINE L1 -325 5806 5267 2421 88 0 0 chr3 125807112 125807409 -92229749 + AluY SINE Alu 1 297 -14 1436 212 62 69 chr3 125807409 125807857 -92229301 - L1PA8A LINE L1 -864 5267 4817 1072 193 5 58 chr3 125807871 125808094 -92229064 - AluJo SINE Alu -20 292 82 303 214 12 48 chr3 125808097 125808181 -92228977 + L1M4 LINE L1 4734 4814 -1332 236 224 0 0 chr3 125808191 125808240 -92228918 + Alu SINE Alu 35 83 -219 4554 139 25 38 chr3 125808240 125808905 -92228253 - L1 LINE L1 -1011 5135 4484 1322 118 59 14 chr3 125808905 125809125 -92228033 + MER30 DNA MER1_type 1 230 0 4554 139 25 38 chr3 125809125 125809380 -92227778 - L1 LINE L1 -1662 4484 4227 256 278 148 68 chr3 125810223 125810622 -92226536 - L1 LINE L1 -1904 4242 3812 276 378 64 6 chr3 125810698 125810854 -92226304 + L2 LINE L2 2594 2758 -556 239 152 0 45 chr3 125811617 125811683 -92225475 + T-rich Low_complexity Low_complexity 4 66 0 2523 64 0 0 chr3 125812319 125812630 -92224528 - AluY SINE Alu 0 311 1 185 0 40 0 chr3 125813202 125813227 -92223931 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 254 303 59 85 chr3 125813285 125813336 -92223822 - L2 LINE L2 -237 3035 2984 1860 181 52 65 chr3 125813336 125813794 -92223364 + LTR47A LTR ERVL 1 452 0 254 303 59 85 chr3 125813794 125813996 -92223162 - L2 LINE L2 -288 2984 2783 262 276 204 41 chr3 125814743 125814841 -92222317 + MIR SINE MIR 17 130 -78 229 250 114 34 chr3 125815669 125815757 -92221401 + MER77 LTR ERV1 53 147 -458 305 228 18 0 chr3 125815957 125816014 -92221144 + MER77 LTR ERV1 293 350 -255 1773 161 164 16 chr3 125816087 125816460 -92220698 + MSTA LTR MaLR 1 428 0 9042 147 14 35 chr3 125816462 125818071 -92219087 + THE1C-int LTR MaLR 3 1576 -4 1829 148 40 35 chr3 125818075 125818448 -92218710 + THE1C LTR MaLR 1 375 0 634 186 0 105 chr3 125818969 125819141 -92218017 + L1M3e LINE L1 62 215 -6876 682 203 46 124 chr3 125819147 125819453 -92217705 + L1M3e LINE L1 358 639 -6452 476 126 0 11 chr3 125819453 125819540 -92217618 + L1MA8 LINE L1 6205 6290 -1 24 32 0 0 chr3 125819677 125819708 -92217450 + AT_rich Low_complexity Low_complexity 1 31 0 15930 95 11 12 chr3 125820084 125822299 -92214859 + HERVL LTR ERVL 3408 5619 -35 2362 253 72 31 chr3 125822486 125824571 -92212587 + L1M3e LINE L1 1592 3488 -3679 238 132 0 0 chr3 125824571 125824609 -92212549 + L1 LINE L1 4411 4448 -1698 1216 181 211 12 chr3 125824684 125825026 -92212132 - MSTA LTR MaLR 0 428 19 8339 154 15 38 chr3 125825101 125826702 -92210456 - MSTA-int LTR MaLR -13 1567 3 1770 161 164 16 chr3 125826704 125827077 -92210081 - MSTA LTR MaLR 0 428 1 285 228 18 0 chr3 125827150 125827207 -92209951 - MER77 LTR ERV1 -255 350 293 264 276 204 41 chr3 125828323 125828421 -92208737 - MIR SINE MIR -78 130 17 247 300 94 85 chr3 125829165 125829367 -92207791 + L2 LINE L2 2783 2986 -286 1848 181 52 65 chr3 125829367 125829825 -92207333 - LTR47A LTR ERVL 0 452 1 247 300 94 85 chr3 125829825 125829876 -92207282 + L2 LINE L2 2986 3035 -237 185 0 40 0 chr3 125829934 125829959 -92207199 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 679 146 81 32 chr3 125830524 125830709 -92206449 + AluY SINE Alu 3 196 -115 280 275 221 23 chr3 125883371 125883502 -92153656 - L3 LINE CR1 -58 1519 1363 557 301 27 0 chr3 125883680 125883863 -92153295 + MER5A DNA MER1_type 2 189 0 40 59 0 0 chr3 125884056 125884124 -92153034 + AT_rich Low_complexity Low_complexity 1 68 0 250 313 109 45 chr3 125884145 125884660 -92152498 + L1MC/D LINE L1 5265 5812 -1996 436 264 66 85 chr3 125884770 125884949 -92152209 - MIR SINE MIR -53 209 33 2115 59 15 0 chr3 125884949 125885222 -92151936 - AluY SINE Alu -34 277 1 436 264 66 85 chr3 125885222 125885254 -92151904 - MIR SINE MIR -229 33 2 342 123 0 0 chr3 125885447 125885504 -92151654 + (GGGA)n Simple_repeat Simple_repeat 4 60 0 219 211 0 0 chr3 125885506 125885544 -92151614 + polypurine Low_complexity Low_complexity 3 40 0 2458 225 34 24 chr3 125885812 125886451 -92150707 + L1MC3 LINE L1 7131 7776 -9 186 316 92 13 chr3 125886520 125886596 -92150562 - L2 LINE L2 -36 3277 3196 2096 134 3 3 chr3 125886750 125887057 -92150101 - AluSx SINE Alu -4 308 2 244 285 150 20 chr3 125887412 125887658 -92149500 - L1MEd LINE L1 -4868 1251 974 1008 282 54 75 chr3 125887868 125888333 -92148825 + LTR40a LTR ERVL 3 457 -62 527 327 114 35 chr3 125888861 125889209 -92147949 - LTR67 LTR ERVL 0 557 173 333 118 0 0 chr3 125889209 125889260 -92147898 + (CA)n Simple_repeat Simple_repeat 2 52 0 527 327 114 35 chr3 125889260 125889306 -92147852 - LTR67 LTR ERVL -384 173 132 2166 121 0 0 chr3 125890777 125891075 -92146083 + AluY SINE Alu 1 298 -13 192 379 0 0 chr3 125891262 125891320 -92145838 - L2 LINE L2 -61 3211 3154 22 0 0 0 chr3 125891376 125891398 -92145760 + AT_rich Low_complexity Low_complexity 1 22 0 206 387 33 41 chr3 125891523 125891766 -92145392 - L2 LINE L2 -227 3045 2805 3820 164 23 16 chr3 125891784 125892474 -92144684 - MER50 LTR ERV1 -23 711 17 630 268 19 15 chr3 125892577 125892782 -92144376 + L1MA10 LINE L1 461 666 -6823 11101 228 52 40 chr3 125892783 125894350 -92142808 + L1MA10 LINE L1 2078 3625 -4106 2080 118 3 0 chr3 125894350 125894637 -92142521 + AluSc SINE Alu 1 288 -21 11101 228 52 40 chr3 125894637 125895862 -92141296 + L1MA10 LINE L1 3625 4834 -2897 1011 64 50 0 chr3 125895862 125896003 -92141155 + L1PA5 LINE L1 6004 6151 -3 11101 228 52 40 chr3 125896003 125897756 -92139402 + L1MA10 LINE L1 4834 6704 -1027 3109 61 2 2 chr3 125897756 125898156 -92139002 + L1PA4 LINE L1 5746 6152 -3 11101 228 52 40 chr3 125898156 125898665 -92138493 + L1MA10 LINE L1 6704 7205 -526 369 188 0 0 chr3 125898666 125898730 -92138428 - MER2 DNA MER2_type 0 345 282 * 603 206 23 23 chr3 125898705 125898836 -92138322 - MER8 DNA MER2_type -60 179 49 297 172 47 0 chr3 125898848 125898912 -92138246 + L1MA10 LINE L1 7590 7656 -97 441 250 29 10 chr3 125898921 125899025 -92138133 + Tigger3(Golem) DNA MER2_type 2 107 -2922 430 103 0 29 chr3 125899017 125899085 -92138073 + Tigger3(Golem) DNA MER2_type 2277 2342 -687 * 252 22 43 22 chr3 125899086 125899132 -92138026 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 2110 94 16 22 chr3 125899136 125899454 -92137704 - THE1C LTR MaLR -59 316 1 641 179 0 9 chr3 125899487 125899599 -92137559 - L1M2 LINE L1 -6738 111 1 4767 46 5 2 chr3 125899642 125900232 -92136926 - L1PA5 LINE L1 0 6154 5563 294 193 0 18 chr3 125900233 125900290 -92136868 + Tigger3(Golem) DNA MER2_type 52 107 -2922 * 3551 144 53 14 chr3 125900282 125900982 -92136176 + Tigger3(Golem) DNA MER2_type 2278 3004 -25 349 114 89 25 chr3 125901027 125901106 -92136052 + L1MA10 LINE L1 6249 6332 -2 465 246 66 24 chr3 125901853 125902064 -92135094 - L1M4 LINE L1 -917 5229 5010 22 70 0 0 chr3 125902105 125902148 -92135010 + AT_rich Low_complexity Low_complexity 1 43 0 354 150 150 0 chr3 125902149 125902229 -92134929 - L1MA5 LINE L1 -2 6298 6207 2547 268 53 19 chr3 125902279 125903180 -92133978 - L1M4 LINE L1 -1118 5028 4097 326 331 99 11 chr3 125903610 125903848 -92133310 - MLT1K LTR MaLR -208 380 78 6821 198 18 5 chr3 125905110 125907519 -92129639 + L1PA16 LINE L1 3728 6162 -4 240 250 114 29 chr3 125908109 125908249 -92128909 + L2 LINE L2 3161 3312 -1 195 42 0 0 chr3 125908852 125908876 -92128282 + (TG)n Simple_repeat Simple_repeat 1 24 0 222 241 0 19 chr3 125909608 125909662 -92127496 + CT-rich Low_complexity Low_complexity 2 54 0 221 354 12 0 chr3 125909848 125909930 -92127228 - L2 LINE L2 -4 3268 3186 249 222 42 14 chr3 125910068 125910140 -92127018 - L2 LINE L2 -227 3045 2972 1194 211 52 81 chr3 125910504 125910912 -92126246 + MSTD LTR MaLR 1 396 0 374 327 160 6 chr3 125911519 125911675 -92125483 + MER5A DNA MER1_type 9 188 -1 328 394 139 19 chr3 125911717 125912149 -92125009 + L1ME LINE L1 137 620 -5585 1517 253 63 55 chr3 125912195 125912625 -92124533 - L1MEc LINE L1 -2954 3428 3003 2208 50 4 4 chr3 125912625 125912951 -92124207 + AluY SINE Alu 1 326 0 1517 253 63 55 chr3 125912951 125913979 -92123179 - L1MEc LINE L1 -3379 3003 1856 236 260 14 14 chr3 125914018 125914091 -92123067 - L1MEc LINE L1 -4773 1611 1539 1780 223 121 98 chr3 125914313 125914493 -92122665 - MER21B LTR ERV1 -121 742 568 1956 122 0 21 chr3 125914493 125914820 -92122338 + AluSx SINE Alu 2 322 0 1780 223 121 98 chr3 125914820 125915363 -92121795 - MER21B LTR ERV1 -295 568 1 34 0 0 0 chr3 125915384 125915418 -92121740 + AT_rich Low_complexity Low_complexity 1 34 0 1566 257 64 15 chr3 125915470 125916314 -92120844 + L1ME LINE L1 1731 2578 -3637 1690 163 46 3 chr3 125916318 125916601 -92120557 + L1M4c LINE L1 13 307 -6077 1491 220 48 20 chr3 125916604 125916958 -92120200 - MLT1A1 LTR MaLR -1 364 1 5395 168 115 92 chr3 125916965 125918623 -92118535 - pTR5 LTR ERV1 0 2438 743 4137 248 87 87 chr3 125918629 125918883 -92118275 - MLT1A1-int LTR MaLR -6 1729 1476 270 111 0 0 chr3 125918883 125918928 -92118230 + MADE1 DNA Mariner 1 45 -35 4137 248 87 87 chr3 125918928 125920357 -92116801 - MLT1A1-int LTR MaLR -258 1477 2 274 247 140 0 chr3 125920404 125920497 -92116661 + MLT1F1-int LTR MaLR 476 581 -790 2089 170 72 5 chr3 125920759 125921160 -92115998 - MSTA LTR MaLR 0 428 1 490 298 34 99 chr3 125921551 125921904 -92115254 + MLT1F1-int LTR MaLR 1039 1368 -3 744 278 255 38 chr3 125921904 125922347 -92114811 + MLT1F1 LTR MaLR 27 565 -2 3086 258 67 39 chr3 125922393 125923892 -92113266 + L1ME LINE L1 3134 4675 -1540 4058 207 39 12 chr3 125923901 125925251 -92111907 - L1MB8 LINE L1 -4 6174 4786 27 29 0 0 chr3 125925261 125925295 -92111863 + AT_rich Low_complexity Low_complexity 1 34 0 311 132 88 0 chr3 125925314 125925382 -92111776 - L1MA7 LINE L1 -27 6264 6191 263 159 0 0 chr3 125925387 125925431 -92111727 - MER31-int LTR ERV1 -1972 2964 2921 6982 54 0 5 chr3 125925431 125926366 -92110792 - L1PA6 LINE L1 -3 6151 5219 4433 188 6 21 chr3 125926366 125927234 -92109924 - L1P LINE L1 -5281 865 11 573 111 49 7 chr3 125927225 125927347 -92109811 - L1MA7 LINE L1 -71 6220 6098 * 3702 165 30 6 chr3 125927350 125927994 -92109164 - MER6A DNA MER2_type -12 593 195 677 256 52 10 chr3 125928138 125928439 -92108719 - MER6A DNA MER2_type -412 193 2 396 163 50 0 chr3 125928443 125928523 -92108635 - L1MA7 LINE L1 -193 6098 6015 868 143 34 14 chr3 125928554 125928701 -92108457 - THE1B LTR MaLR 0 364 215 3643 180 35 15 chr3 125928702 125929842 -92107316 - L1MA7 LINE L1 -255 6036 4876 2043 94 4 0 chr3 125929842 125930117 -92107041 + THE1C LTR MaLR 1 276 -99 1105 151 34 71 chr3 125930117 125930355 -92106803 + THE1B LTR MaLR 1 229 -135 746 115 0 0 chr3 125930386 125930490 -92106668 - THE1C LTR MaLR 0 375 272 842 150 34 14 chr3 125930490 125930637 -92106521 - THE1B LTR MaLR 0 364 215 9459 112 36 45 chr3 125930637 125931160 -92105998 + THE1C-int LTR MaLR 51 577 -1003 2192 97 28 0 chr3 125931160 125931448 -92105710 + AluSq SINE Alu 1 296 -17 9459 112 36 45 chr3 125931448 125932468 -92104690 + THE1C-int LTR MaLR 577 1580 0 2332 152 3 3 chr3 125932468 125932843 -92104315 + THE1C LTR MaLR 1 375 0 1923 218 38 22 chr3 125932843 125933399 -92103759 - L1MA7 LINE L1 -1266 4880 4316 1776 273 53 27 chr3 125933409 125934161 -92102997 - L1M4 LINE L1 -2024 4620 3849 2314 263 66 2 chr3 125934199 125935027 -92102131 - L1M4 LINE L1 -3065 3579 2699 2744 154 16 6 chr3 125935028 125935527 -92101631 - L1MA5 LINE L1 -4 6296 5793 307 109 22 0 chr3 125935547 125935591 -92101567 + MSTB LTR MaLR 2 46 -380 2759 104 6 130 chr3 125935591 125936108 -92101050 + MLT2A2 LTR ERVL 1 453 0 1590 174 46 20 chr3 125936108 125936412 -92100746 + MSTB LTR MaLR 42 353 -73 3214 263 51 56 chr3 125936532 125937946 -92099212 - L1M4 LINE L1 -5110 1432 26 1957 260 69 39 chr3 125937991 125939434 -92097724 + L1ME1 LINE L1 4622 6161 -5 3135 270 27 49 chr3 125939594 125940160 -92096998 + L1M4b LINE L1 11 588 -6271 1469 194 30 68 chr3 125940160 125940628 -92096530 + LTR7 LTR ERV1 1 450 0 3135 270 27 49 chr3 125940628 125940878 -92096280 + L1M4b LINE L1 588 804 -6055 2810 115 25 7 chr3 125940878 125941314 -92095844 + MLT2A1 LTR ERVL 1 444 0 3135 270 27 49 chr3 125941314 125941491 -92095667 + L1M4b LINE L1 804 983 -5876 * 23534 138 24 54 chr3 125941482 125941524 -92095634 + L1PA8A LINE L1 13 55 -6391 221 57 29 0 chr3 125941524 125941559 -92095599 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 23534 138 24 54 chr3 125941559 125945252 -92091906 + L1PA8A LINE L1 55 3536 -2910 7443 35 2 0 chr3 125945252 125946309 -92090849 + L1PA4 LINE L1 5091 6150 -5 23534 138 24 54 chr3 125946309 125948839 -92088319 + L1PA8A LINE L1 3536 6142 -304 2675 228 40 41 chr3 125948867 125949899 -92087259 + L1M4b LINE L1 973 1993 -4862 606 286 65 0 chr3 125949944 125950161 -92086997 + L1M4b LINE L1 2158 2388 -4571 45 62 0 0 chr3 125950161 125950241 -92086917 + AT_rich Low_complexity Low_complexity 1 80 0 354 301 41 89 chr3 125950315 125950418 -92086740 + L1M4b LINE L1 2469 2575 -4563 13458 146 31 14 chr3 125950418 125952793 -92084365 - Tigger1 DNA MER2_type -1 2417 2 354 301 41 89 chr3 125952793 125952935 -92084223 + L1M4b LINE L1 2575 2702 -4436 1243 178 172 28 chr3 125952946 125953266 -92083892 + MER47A DNA MER2_type 1 366 0 689 194 17 4 chr3 125953560 125953786 -92083372 + CT-rich Low_complexity Low_complexity 1 228 0 186 187 0 40 chr3 125953802 125953877 -92083281 + CT-rich Low_complexity Low_complexity 1 72 0 406 250 90 7 chr3 125954116 125954260 -92082898 + MIR SINE MIR 51 206 -56 194 304 87 11 chr3 125954581 125954673 -92082485 - MIR SINE MIR -1 261 163 2057 109 58 0 chr3 125954742 125955035 -92082123 + AluSg SINE Alu 1 310 0 513 76 0 0 chr3 125955449 125955528 -92081630 + (TG)n Simple_repeat Simple_repeat 2 80 0 203 304 0 0 chr3 125955918 125955964 -92081194 + polypyrimidine Low_complexity Low_complexity 6 51 0 244 359 0 19 chr3 125956027 125956130 -92081028 + MER5A DNA MER1_type 1 101 -88 421 355 125 0 chr3 125956720 125956920 -92080238 - MIR SINE MIR -33 229 5 1306 179 29 7 chr3 125957033 125957540 -92079618 - MER89 LTR ERV1 0 559 1 696 252 33 13 chr3 125957776 125958035 -92079123 + L1ME LINE L1 5414 5682 -439 340 280 88 52 chr3 125960284 125960477 -92076681 - L2 LINE L2 0 3313 3114 939 144 0 0 chr3 125960548 125960680 -92076478 + AluSp/q SINE Alu 159 290 -23 669 323 40 10 chr3 125961342 125961741 -92075417 + L1M4b LINE L1 3038 3448 -3509 445 194 51 0 chr3 125961830 125961928 -92075230 + L1M4b LINE L1 4397 4499 -2458 342 0 0 0 chr3 125962044 125962082 -92075076 + (CA)n Simple_repeat Simple_repeat 2 39 0 2811 179 20 13 chr3 125962082 125963087 -92074071 - L1M2 LINE L1 -517 5783 4773 842 296 21 41 chr3 125963093 125963431 -92073727 - L1M2b LINE L1 -6862 347 17 605 292 65 19 chr3 125963453 125963885 -92073273 - L1M4c LINE L1 -3903 2481 2030 266 215 13 0 chr3 125964162 125964241 -92072917 + (TATG)n Simple_repeat Simple_repeat 3 82 0 43 20 0 0 chr3 125964273 125964323 -92072835 + AT_rich Low_complexity Low_complexity 1 50 0 227 264 155 26 chr3 125964335 125964683 -92072475 - L1M4 LINE L1 -2732 3414 3022 588 242 96 61 chr3 125964747 125965110 -92072048 - L1M4 LINE L1 -3336 2810 2435 1327 255 18 28 chr3 125965232 125965727 -92071431 + L1MC4 LINE L1 7086 7627 -415 2927 247 20 37 chr3 125966176 125967750 -92069408 + L1ME1 LINE L1 4553 6094 -72 24 53 0 0 chr3 125967791 125967829 -92069329 + AT_rich Low_complexity Low_complexity 1 38 0 1492 290 103 41 chr3 125967900 125970016 -92067142 + L1ME3 LINE L1 3713 5967 -195 1105 111 184 21 chr3 125971711 125971901 -92065257 + MER30 DNA MER1_type 1 221 -9 27 0 0 0 chr3 125972426 125972453 -92064705 + AT_rich Low_complexity Low_complexity 1 27 0 229 224 0 0 chr3 125972774 125972823 -92064335 + A-rich Low_complexity Low_complexity 1 49 0 684 241 29 8 chr3 125972830 125973003 -92064155 + MER5B DNA MER1_type 1 189 0 2318 101 0 0 chr3 125973771 125974068 -92063090 + AluSg SINE Alu 2 298 -12 441 257 0 71 chr3 125974114 125974254 -92062904 - L2 LINE L2 0 3313 3184 1417 120 0 0 chr3 125974273 125974490 -92062668 - L1PA14 LINE L1 -2 6159 5943 434 214 107 38 chr3 125974504 125974663 -92062495 + L2 LINE L2 3028 3197 -116 289 200 38 0 chr3 125975062 125975142 -92062016 + (CATATA)n Simple_repeat Simple_repeat 2 84 0 944 286 70 28 chr3 125975151 125975648 -92061510 + HAL1 LINE L1 1105 1622 -885 300 23 0 23 chr3 125975814 125975858 -92061300 + L1PA3 LINE L1 6110 6152 -3 630 269 0 38 chr3 125976246 125976406 -92060752 + MER5A DNA MER1_type 36 189 0 1168 285 148 27 chr3 125976870 125977456 -92059702 - L3 LINE CR1 -290 1287 631 183 243 45 117 chr3 125977518 125977629 -92059529 - MIR SINE MIR -50 212 110 214 226 0 97 chr3 125977703 125977765 -92059393 - L3 LINE CR1 -1038 539 484 445 346 72 52 chr3 125978666 125979013 -92058145 - L2 LINE L2 -4 3268 2915 1728 166 29 0 chr3 125981000 125981277 -92055881 + AluJb SINE Alu 1 285 -27 2539 59 0 0 chr3 125982771 125983078 -92054080 + AluY SINE Alu 1 307 -4 212 300 0 0 chr3 125983104 125983164 -92053994 + MIR3 SINE MIR 112 171 -37 235 269 0 0 chr3 125984375 125984427 -92052731 + MIR SINE MIR 209 260 -2 298 286 0 59 chr3 125984515 125984634 -92052524 - MIR SINE MIR -102 160 49 1380 284 83 20 chr3 125985479 125985972 -92051186 + MLT1E LTR MaLR 70 593 0 826 236 28 37 chr3 125986460 125986786 -92050372 - L1M4 LINE L1 -3074 3072 2750 4438 170 16 41 chr3 125986789 125988173 -92048985 + L1MA7 LINE L1 4732 6078 -213 1577 253 61 17 chr3 125988597 125989059 -92048099 + MER57-int LTR ERV1 6663 7144 -393 912 184 70 50 chr3 125989061 125989502 -92047656 + LTR54 LTR ERV1 1 510 0 195 276 103 86 chr3 125990662 125990778 -92046380 - L2 LINE L2 -9 3304 3187 22 0 0 0 chr3 125992321 125992343 -92044815 + AT_rich Low_complexity Low_complexity 1 22 0 843 147 5 100 chr3 125993693 125993883 -92043275 + L1PB4 LINE L1 5984 6155 -1 3381 231 58 52 chr3 125994456 125994760 -92042398 - L1MD2 LINE L1 -92 6267 5966 3258 49 0 5 chr3 125994760 125995167 -92041991 + L1PA8 LINE L1 5762 6166 -6 3381 231 58 52 chr3 125995167 125995230 -92041928 - L1MD2 LINE L1 -393 5966 5905 2317 72 0 10 chr3 125995230 125995520 -92041638 - AluY SINE Alu -9 302 16 3381 231 58 52 chr3 125995520 125996050 -92041108 - L1MD2 LINE L1 -454 5905 5380 2715 103 0 3 chr3 125996050 125996420 -92040738 - THE1C LTR MaLR -4 371 3 9381 116 30 59 chr3 125996422 125998049 -92039109 - THE1C-int LTR MaLR 0 1580 1 2630 123 0 5 chr3 125998049 125998424 -92038734 - THE1C LTR MaLR 0 375 3 3381 231 58 52 chr3 125998424 125999654 -92037504 - L1MD2 LINE L1 -978 5381 4081 442 295 83 0 chr3 126000559 126000715 -92036443 + MER96 DNA MER1_type 5 173 -2 236 318 159 17 chr3 126001021 126001197 -92035961 + MIR SINE MIR 1 201 -61 220 317 12 12 chr3 126001362 126001444 -92035714 - MER5B DNA MER1_type -80 98 17 822 343 109 13 chr3 126002404 126003019 -92034139 - L3 LINE CR1 -25 1552 879 301 324 101 34 chr3 126003020 126003168 -92033990 + MIR3 SINE MIR 15 172 -36 1009 305 116 30 chr3 126003423 126004033 -92033125 - MLT2F LTR ERVL 0 663 1 23 0 0 0 chr3 126004188 126004211 -92032947 + AT_rich Low_complexity Low_complexity 1 23 0 217 211 0 0 chr3 126004292 126004330 -92032828 + (TG)n Simple_repeat Simple_repeat 1 38 0 1217 245 68 19 chr3 126004703 126004739 -92032419 - MLT2D LTR ERVL 0 520 487 432 0 0 0 chr3 126004739 126004787 -92032371 + (CA)n Simple_repeat Simple_repeat 2 49 0 1217 245 68 19 chr3 126004787 126005208 -92031950 - MLT2D LTR ERVL -33 487 3 2465 85 0 0 chr3 126005274 126005581 -92031577 - AluSx SINE Alu -5 307 1 2644 251 98 22 chr3 126009967 126011711 -92025447 - L1ME2 LINE L1 -11 6153 4268 661 269 185 18 chr3 126011872 126012262 -92024896 - L1MC4 LINE L1 -1928 6114 5660 22 35 0 0 chr3 126012881 126012910 -92024248 + AT_rich Low_complexity Low_complexity 1 29 0 201 108 0 0 chr3 126013167 126013204 -92023954 + (TG)n Simple_repeat Simple_repeat 2 38 0 21258 168 25 18 chr3 126013511 126015238 -92021920 + L1MA3 LINE L1 14 1729 -5995 234 0 0 0 chr3 126015238 126015264 -92021894 + (GA)n Simple_repeat Simple_repeat 1 26 0 21258 168 25 18 chr3 126015264 126016830 -92020328 + L1MA3 LINE L1 1729 3284 -4440 2149 109 3 0 chr3 126016830 126017115 -92020043 + AluSp SINE Alu 1 286 -27 328 20 41 0 chr3 126017115 126017164 -92019994 + (TA)n Simple_repeat Simple_repeat 2 52 0 21258 168 25 18 chr3 126017164 126017239 -92019919 + L1MA3 LINE L1 3284 3357 -4367 2494 52 0 0 chr3 126017239 126017526 -92019632 + AluY SINE Alu 17 303 -8 21258 168 25 18 chr3 126017526 126018061 -92019097 + L1MA3 LINE L1 3357 3887 -3837 1357 233 21 3 chr3 126018061 126018348 -92018810 + AluJo SINE Alu 3 294 -18 21258 168 25 18 chr3 126018348 126022100 -92015058 + L1MA3 LINE L1 3887 7724 0 770 304 122 47 chr3 126022507 126022908 -92014250 + LTR16B LTR ERVL 34 464 0 3815 167 48 95 chr3 126023159 126024524 -92012634 - L1MA9 LINE L1 -14 6298 5011 1921 157 0 0 chr3 126024524 126024846 -92012312 + AluSx SINE Alu 1 322 0 3815 167 48 95 chr3 126024846 126024886 -92012272 - L1MA9 LINE L1 -1301 5011 4971 1295 206 104 15 chr3 126024886 126025221 -92011937 + MLT1A1 LTR MaLR 1 365 0 2321 170 135 2 chr3 126025240 126025751 -92011407 + L1 LINE L1 4374 4952 -1194 221 56 0 28 chr3 126025762 126025798 -92011360 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 10579 28 0 1 chr3 126025798 126027807 -92009351 - L1PA3 LINE L1 -24 6131 4125 407 198 0 0 chr3 126027941 126028027 -92009131 + L1MC2 LINE L1 6250 6335 -9 1717 216 40 88 chr3 126030299 126030951 -92006207 + MLT1E2 LTR MaLR 3 616 -10 299 345 25 42 chr3 126030972 126031091 -92006067 - L2 LINE L2 -16 3256 3140 234 179 89 0 chr3 126031094 126031150 -92006008 - LTR66 LTR ERVL -171 439 379 281 320 10 0 chr3 126031575 126031675 -92005483 + (TA)n Simple_repeat Simple_repeat 2 102 0 21 57 0 0 chr3 126031678 126031713 -92005445 + AT_rich Low_complexity Low_complexity 1 35 0 301 226 63 14 chr3 126033193 126033298 -92003860 - L1ME3 LINE L1 0 6164 6059 227 171 0 0 chr3 126033300 126033341 -92003817 - MER3 DNA MER1_type -159 50 10 843 341 48 14 chr3 126034215 126034652 -92002506 + LTR16B LTR ERVL 13 464 0 264 59 0 0 chr3 126035324 126035358 -92001800 + (TG)n Simple_repeat Simple_repeat 1 34 0 201 179 0 26 chr3 126035682 126035721 -92001437 + (TTG)n Simple_repeat Simple_repeat 2 39 0 558 293 105 3 chr3 126035977 126036301 -92000857 + L1MEc LINE L1 2083 2439 -3957 870 124 0 23 chr3 126036302 126036431 -92000727 + FLAM_C SINE Alu 1 126 -17 3733 297 52 19 chr3 126036438 126038542 -91998616 + L1MEc LINE L1 2388 4559 -1656 1512 249 66 11 chr3 126038548 126039150 -91998008 + L1MEc LINE L1 5156 5784 -451 1325 231 112 50 chr3 126039170 126039870 -91997288 + L1ME1 LINE L1 5210 5950 -214 8632 29 1 2 chr3 126039897 126041360 -91995798 - L1PA5 LINE L1 -341 5814 4354 2533 41 22 6 chr3 126041360 126041669 -91995489 + L1PA5 LINE L1 5831 6154 0 231 88 0 0 chr3 126041906 126041940 -91995218 + (CA)n Simple_repeat Simple_repeat 2 35 0 281 264 11 28 chr3 126041943 126042077 -91995081 - L1MC/D LINE L1 -303 5818 5689 259 206 130 11 chr3 126042151 126042243 -91994915 + L1ME1 LINE L1 5998 6100 -66 27 29 0 0 chr3 126042268 126042302 -91994856 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr3 126042316 126042337 -91994821 + AT_rich Low_complexity Low_complexity 1 21 0 1803 167 7 0 chr3 126042404 126042698 -91994460 - AluSq SINE Alu -12 301 6 405 318 24 24 chr3 126042765 126042891 -91994267 - MIR SINE MIR -105 157 32 274 111 0 0 chr3 126042891 126042927 -91994231 - AluSg SINE Alu -34 266 231 840 110 118 7 chr3 126042928 126043064 -91994094 - AluSg SINE Alu -154 156 6 5152 173 25 28 chr3 126043258 126044934 -91992224 - L1MA9 LINE L1 -1 6311 4639 379 158 11 21 chr3 126045134 126045229 -91991929 + C-rich Low_complexity Low_complexity 1 94 0 186 118 0 59 chr3 126045240 126045291 -91991867 + (TTCTC)n Simple_repeat Simple_repeat 4 51 0 207 162 0 0 chr3 126045393 126045430 -91991728 + CT-rich Low_complexity Low_complexity 1 37 0 2273 92 3 0 chr3 126046100 126046394 -91990764 - AluSq SINE Alu -18 295 1 24 77 0 0 chr3 126046850 126046902 -91990256 + AT_rich Low_complexity Low_complexity 1 52 0 1910 214 61 65 chr3 126048452 126049008 -91988150 - MLT2B3 LTR ERVL 0 554 1 2116 278 34 18 chr3 126049068 126049803 -91987355 - MER20B DNA MER1_type -36 747 1 234 62 0 0 chr3 126050935 126050967 -91986191 + (CA)n Simple_repeat Simple_repeat 1 32 0 1672 169 61 25 chr3 126051680 126052042 -91985116 - THE1C LTR MaLR 0 375 1 257 237 51 59 chr3 126052618 126052736 -91984422 + MER103 DNA DNA 45 161 -5 442 232 67 77 chr3 126054770 126054964 -91982194 + L1MC/D LINE L1 5564 5755 -2053 400 291 16 16 chr3 126055307 126055434 -91981724 + MIR3 SINE MIR 8 134 -74 1536 189 65 28 chr3 126055478 126055833 -91981325 - MLT1B LTR MaLR 0 390 23 316 266 75 62 chr3 126057708 126057934 -91979224 + L3 LINE CR1 619 847 -730 21 0 0 0 chr3 126058545 126058566 -91978592 + AT_rich Low_complexity Low_complexity 1 21 0 1603 205 42 25 chr3 126061186 126061634 -91975524 - L1MA9 LINE L1 -1596 4550 4095 6809 249 59 40 chr3 126061639 126062597 -91974561 - L1 LINE L1 -1855 5251 4312 333 68 0 0 chr3 126062597 126062641 -91974517 + (TA)n Simple_repeat Simple_repeat 2 45 0 6809 249 59 40 chr3 126062641 126066090 -91971068 - L1 LINE L1 -2794 4312 1123 514 258 0 17 chr3 126066090 126066210 -91970948 - L1 LINE L1 -6912 118 1 332 335 133 44 chr3 126066449 126067057 -91970101 - L1M4 LINE L1 -1524 4622 3961 344 329 56 33 chr3 126067153 126067366 -91969792 - L1M4 LINE L1 -2320 3826 3609 228 275 0 64 chr3 126068270 126068379 -91968779 - MLT1H LTR MaLR -17 532 431 24 0 0 0 chr3 126068517 126068541 -91968617 + AT_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr3 126069050 126069072 -91968086 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 22 0 0 0 chr3 126072202 126072224 -91964934 + AT_rich Low_complexity Low_complexity 1 22 0 304 313 49 45 chr3 126072378 126072621 -91964537 + HAL1b LINE L1 371 614 -734 22 56 0 0 chr3 126072911 126072947 -91964211 + AT_rich Low_complexity Low_complexity 1 36 0 2021 82 10 27 chr3 126073232 126073526 -91963632 + AluSg SINE Alu 1 289 -21 1809 270 68 71 chr3 126073616 126074121 -91963037 + L1ME LINE L1 90 595 -5666 2054 116 14 0 chr3 126074121 126074414 -91962744 + AluSq SINE Alu 1 297 -16 1809 270 68 71 chr3 126074414 126075033 -91962125 + L1ME LINE L1 595 1214 -5047 957 63 16 0 chr3 126075033 126075160 -91961998 + L1PA6 LINE L1 6026 6154 0 1809 270 68 71 chr3 126075160 126076006 -91961152 + L1ME LINE L1 1214 2081 -4180 387 282 15 13 chr3 126076016 126076173 -91960985 + L1PB3 LINE L1 5 141 -6709 2688 194 95 11 chr3 126076213 126077042 -91960116 + L1PB3 LINE L1 1398 2299 -4551 * 5139 254 13 9 chr3 126077023 126078714 -91958444 + L1PB3 LINE L1 2591 4281 -2568 1477 153 11 8 chr3 126078714 126078975 -91958183 + L1MA1 LINE L1 4073 4334 -1812 2106 90 21 0 chr3 126078980 126079268 -91957890 - THE1A LTR MaLR 0 355 62 5801 112 14 0 chr3 126079269 126080139 -91957019 + L1MA1 LINE L1 5417 6298 -4 24 0 0 0 chr3 126080139 126080163 -91956995 + AT_rich Low_complexity Low_complexity 1 24 0 7186 187 38 4 chr3 126080163 126081838 -91955320 + L1PB3 LINE L1 4269 5885 -972 197 81 0 27 chr3 126081838 126081875 -91955283 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 7186 187 38 4 chr3 126081875 126082344 -91954814 + L1PB3 LINE L1 5885 6503 -354 360 0 0 0 chr3 126082344 126082384 -91954774 + (CA)n Simple_repeat Simple_repeat 2 41 0 7186 187 38 4 chr3 126082384 126082539 -91954619 + L1PB3 LINE L1 6503 6651 -206 24 67 0 0 chr3 126082694 126082739 -91954419 + AT_rich Low_complexity Low_complexity 1 45 0 452 318 98 32 chr3 126083499 126084614 -91952544 + L1MC4a LINE L1 4055 5242 -904 2764 284 110 29 chr3 126084716 126086347 -91950811 + L1MC4a LINE L1 5951 7713 -95 25 83 0 0 chr3 126087852 126087912 -91949246 + AT_rich Low_complexity Low_complexity 1 60 0 203 327 69 20 chr3 126088382 126088483 -91948675 - L2 LINE L2 -33 3280 3175 1555 177 21 42 chr3 126089598 126089886 -91947272 - AluJo SINE Alu -30 282 1 769 299 84 19 chr3 126090584 126091139 -91946019 - L2 LINE L2 -83 3230 2589 2221 105 6 6 chr3 126091690 126092003 -91945155 + AluSp SINE Alu 1 313 0 341 286 41 0 chr3 126092296 126092394 -91944764 + MIR3 SINE MIR 97 198 -10 470 329 14 0 chr3 126093160 126093306 -91943852 + MIR3 SINE MIR 58 205 -3 24 77 0 0 chr3 126093570 126093622 -91943536 + AT_rich Low_complexity Low_complexity 1 52 0 25 31 0 0 chr3 126096387 126096419 -91940739 + AT_rich Low_complexity Low_complexity 1 32 0 15621 108 9 3 chr3 126097497 126098187 -91938971 + L1PA7 LINE L1 2986 3671 -2483 279 0 0 0 chr3 126098187 126098218 -91938940 + (CAA)n Simple_repeat Simple_repeat 3 33 0 15621 108 9 3 chr3 126098218 126100668 -91936490 + L1PA7 LINE L1 3671 6154 0 294 330 28 18 chr3 126102311 126102420 -91934738 - L2 LINE L2 0 3313 3204 214 324 88 10 chr3 126105277 126105379 -91931779 + MER5B DNA MER1_type 79 177 -1 246 261 46 0 chr3 126105930 126105995 -91931163 + MIR3 SINE MIR 92 159 -49 978 214 5 10 chr3 126106025 126106226 -91930932 + MER20 DNA MER1_type 16 215 -4 310 296 47 71 chr3 126106269 126106438 -91930720 + MER5A DNA MER1_type 3 167 -22 * 315 357 6 33 chr3 126106288 126106470 -91930688 - MER5A DNA MER1_type -6 183 7 202 333 33 11 chr3 126106586 126106676 -91930482 - MIR SINE MIR -162 100 9 498 219 89 27 chr3 126106884 126107030 -91930128 - MER5B DNA MER1_type -1 177 23 229 378 47 8 chr3 126107092 126107219 -91929939 - L2 LINE L2 -611 2703 2572 181 330 10 52 chr3 126107235 126107332 -91929826 + MIR SINE MIR 37 129 -79 1164 182 5 19 chr3 126107635 126107849 -91929309 + MER20 DNA MER1_type 6 216 -3 351 292 29 40 chr3 126107872 126108039 -91929119 - MIR3 SINE MIR -70 138 3 426 161 17 8 chr3 126109385 126109503 -91927655 + (TG)n Simple_repeat Simple_repeat 2 120 0 256 311 0 0 chr3 126109741 126109815 -91927343 + G-rich Low_complexity Low_complexity 1 74 0 305 258 19 20 chr3 126109819 126110479 -91926679 + CT-rich Low_complexity Low_complexity 1 659 0 226 293 0 45 chr3 126110511 126110668 -91926490 + CT-rich Low_complexity Low_complexity 4 153 0 216 306 125 66 chr3 126110943 126111263 -91925895 - L2 LINE L2 -1261 2053 1715 498 151 16 8 chr3 126112081 126112207 -91924951 + (TG)n Simple_repeat Simple_repeat 2 128 0 298 224 0 0 chr3 126112415 126112482 -91924676 + C-rich Low_complexity Low_complexity 1 67 0 241 206 14 14 chr3 126112500 126112573 -91924585 + GA-rich Low_complexity Low_complexity 1 73 0 229 217 17 17 chr3 126113019 126113079 -91924079 + (CA)n Simple_repeat Simple_repeat 2 61 0 1404 209 10 34 chr3 126115734 126116030 -91921128 - AluJb SINE Alu -13 289 1 2085 122 7 14 chr3 126116243 126116539 -91920619 + AluSq SINE Alu 6 299 -14 218 182 0 0 chr3 126116573 126116587 -91920571 + (TAA)n Simple_repeat Simple_repeat 1 14 -30 1548 215 0 7 chr3 126116587 126116875 -91920283 + AluJb SINE Alu 1 286 -26 218 182 0 0 chr3 126116875 126116904 -91920254 + (TAA)n Simple_repeat Simple_repeat 13 44 0 181 304 54 0 chr3 126117609 126117665 -91919493 + MIR SINE MIR 117 175 -87 189 107 0 0 chr3 126117964 126117992 -91919166 + (CAAAA)n Simple_repeat Simple_repeat 5 32 0 238 310 138 0 chr3 126118088 126118175 -91918983 + MIR3 SINE MIR 7 105 -103 440 335 78 41 chr3 126119396 126119976 -91917182 - L2 LINE L2 -195 3077 2482 200 246 70 0 chr3 126120067 126120124 -91917034 - MIR SINE MIR -85 177 117 204 182 0 0 chr3 126120268 126120301 -91916857 + MIR SINE MIR 73 105 -103 369 296 115 15 chr3 126121726 126122064 -91915094 - L1ME4a LINE L1 -5 6116 5745 249 269 0 15 chr3 126122431 126122498 -91914660 + MIR SINE MIR 197 262 0 208 307 133 33 chr3 126122556 126122706 -91914452 - MIR3 SINE MIR -39 169 5 645 161 8 16 chr3 126123171 126123295 -91913863 + L1PA13 LINE L1 6023 6145 -18 291 259 129 17 chr3 126124359 126124475 -91912683 + MIR3 SINE MIR 65 193 -15 23 0 0 0 chr3 126124824 126124847 -91912311 + AT_rich Low_complexity Low_complexity 1 23 0 693 233 40 0 chr3 126126055 126126205 -91910953 - MIR SINE MIR -105 157 2 192 152 0 0 chr3 126126471 126126504 -91910654 + (ATG)n Simple_repeat Simple_repeat 1 33 0 230 208 20 99 chr3 126126715 126126816 -91910342 + L1MC4 LINE L1 6614 6706 -1336 504 195 21 24 chr3 126126818 126127045 -91910113 + (TA)n Simple_repeat Simple_repeat 1 226 0 383 202 45 22 chr3 126127352 126127441 -91909717 + MIR SINE MIR 128 218 -44 667 302 17 0 chr3 126128630 126128809 -91908349 + MER5A DNA MER1_type 8 189 0 593 236 61 6 chr3 126129247 126129412 -91907746 - MLT1J1 LTR MaLR -272 174 1 316 373 8 8 chr3 126129819 126129937 -91907221 + MIR3 SINE MIR 81 198 -10 374 357 91 21 chr3 126129971 126130114 -91907044 - L2 LINE L2 -2 3270 3118 229 240 0 0 chr3 126131262 126131312 -91905846 + L2 LINE L2 2657 2706 -608 252 355 123 36 chr3 126131625 126131763 -91905395 - L2 LINE L2 -1 3271 3122 25 95 0 0 chr3 126132350 126132424 -91904734 + AT_rich Low_complexity Low_complexity 1 74 0 660 312 138 42 chr3 126132522 126133034 -91904124 + L1M4 LINE L1 3111 3723 -2423 1715 204 8 13 chr3 126133034 126133416 -91903742 + L1MA8 LINE L1 5905 6284 -7 660 312 138 42 chr3 126133416 126133679 -91903479 + L1M4 LINE L1 3723 3960 -2186 27 0 0 0 chr3 126133849 126133876 -91903282 + AT_rich Low_complexity Low_complexity 1 27 0 665 168 21 21 chr3 126134001 126134144 -91903014 + L1MB3 LINE L1 6032 6174 -9 2002 94 0 8 chr3 126134276 126134542 -91902616 + AluSc SINE Alu 28 291 -18 180 0 0 0 chr3 126136696 126136716 -91900442 + (TGG)n Simple_repeat Simple_repeat 3 22 0 192 289 22 0 chr3 126137660 126137705 -91899453 - MIR SINE MIR -214 48 3 21 89 0 0 chr3 126137713 126137769 -91899389 + AT_rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chr3 126137951 126137973 -91899185 + AT_rich Low_complexity Low_complexity 1 22 0 454 218 77 77 chr3 126138321 126138477 -91898681 + MIR SINE MIR 3 158 -104 990 210 5 10 chr3 126138560 126138765 -91898393 - MER2 DNA MER2_type -135 210 7 303 339 18 0 chr3 126138769 126138881 -91898277 + MIR SINE MIR 149 262 0 2111 74 0 28 chr3 126139091 126139376 -91897782 - AluSc SINE Alu -5 304 28 665 168 21 21 chr3 126139508 126139651 -91897507 - L1MB3 LINE L1 -9 6174 6032 27 0 0 0 chr3 126139776 126139803 -91897355 + AT_rich Low_complexity Low_complexity 1 27 0 473 329 108 48 chr3 126139973 126140236 -91896922 - L1M4 LINE L1 -2186 3960 3714 1732 202 8 13 chr3 126140236 126140618 -91896540 - L1MA8 LINE L1 -7 6284 5905 473 329 108 48 chr3 126140618 126140916 -91896242 - L1M4 LINE L1 -2432 3714 3365 25 95 0 0 chr3 126141228 126141302 -91895856 + AT_rich Low_complexity Low_complexity 1 74 0 249 333 90 0 chr3 126141950 126142028 -91895130 + L2 LINE L2 3187 3271 -1 229 240 0 0 chr3 126142341 126142391 -91894767 - L2 LINE L2 -608 2706 2657 374 357 91 21 chr3 126143541 126143684 -91893474 + L2 LINE L2 3118 3270 -2 316 373 8 8 chr3 126143718 126143836 -91893322 - MIR3 SINE MIR -10 198 81 216 0 0 0 chr3 126144405 126144429 -91892729 + (A)n Simple_repeat Simple_repeat 1 24 0 226 253 67 40 chr3 126144697 126144772 -91892386 - L2 LINE L2 -72 3200 3124 194 364 100 9 chr3 126145693 126145803 -91891355 + L2 LINE L2 3149 3268 -4 532 285 0 0 chr3 126146206 126146336 -91890822 + MER94 DNA DNA 5 134 0 2767 13 0 0 chr3 126146489 126146796 -91890362 + AluYa5 SINE Alu 1 307 -4 1275 188 20 77 chr3 126146805 126147103 -91890055 + AluJo SINE Alu 1 281 -31 1832 150 169 5 chr3 126147103 126147470 -91889688 - MSTA LTR MaLR -1 427 1 5054 139 16 2 chr3 126147914 126149637 -91887521 - L1PA16 LINE L1 -1 6165 4445 7861 236 47 7 chr3 126149640 126151599 -91885559 + L1PA15-16 LINE L1 2736 4806 -2043 1983 122 69 28 chr3 126151599 126151959 -91885199 + THE1C LTR MaLR 1 375 0 7861 236 47 7 chr3 126151959 126152308 -91884850 + L1PA15-16 LINE L1 4806 5140 -1709 44 99 0 0 chr3 126153521 126153663 -91883495 + AT_rich Low_complexity Low_complexity 1 142 0 1516 234 21 12 chr3 126154365 126154703 -91882455 - MLT1A1 LTR MaLR 0 365 25 6250 217 83 42 chr3 126154751 126156405 -91880753 - MLT1A1-int LTR MaLR -13 1722 1 1720 190 61 3 chr3 126156405 126156731 -91880427 - MLT1A1 LTR MaLR 0 365 21 284 336 32 24 chr3 126156827 126156952 -91880206 - MIR SINE MIR -73 189 64 211 349 12 12 chr3 126158075 126158161 -91878997 - L2 LINE L2 0 3313 3228 1563 292 58 58 chr3 126161022 126161993 -91875165 - L2 LINE L2 -1 3312 2344 1589 215 25 12 chr3 126162091 126162416 -91874742 - MLT1A1 LTR MaLR -24 341 13 181 263 121 40 chr3 126162555 126162654 -91874504 + MIR3 SINE MIR 87 193 -15 21 0 0 0 chr3 126163019 126163040 -91874118 + AT_rich Low_complexity Low_complexity 1 21 0 204 97 0 0 chr3 126163276 126163307 -91873851 + (TTG)n Simple_repeat Simple_repeat 2 32 0 369 200 191 35 chr3 126166280 126166395 -91870763 - MER69 DNA AcHobo -2387 139 7 279 358 104 15 chr3 126166716 126166850 -91870308 - L2 LINE L2 -31 3241 3096 397 317 106 11 chr3 126168065 126168245 -91868913 + MIR SINE MIR 2 198 -64 244 267 13 27 chr3 126168372 126168447 -91868711 - MIR SINE MIR -136 126 53 26 30 0 0 chr3 126168473 126168506 -91868652 + AT_rich Low_complexity Low_complexity 1 33 0 1266 205 0 0 chr3 126169495 126169719 -91867439 - MER58A DNA MER1_type 0 224 1 357 361 23 0 chr3 126169751 126169881 -91867277 - MIR3 SINE MIR -46 162 30 292 348 54 9 chr3 126170917 126171029 -91866129 + MIR SINE MIR 20 136 -72 33 0 0 0 chr3 126171115 126171148 -91866010 + AT_rich Low_complexity Low_complexity 1 33 0 254 146 0 18 chr3 126171151 126171206 -91865952 + L1MB2 LINE L1 6106 6159 -12 614 250 37 0 chr3 126172755 126172891 -91864267 - MER5A DNA MER1_type -48 141 1 3085 152 37 20 chr3 126173146 126173667 -91863491 - L1MA9 LINE L1 0 6312 5778 468 0 0 0 chr3 126173667 126173719 -91863439 + (TG)n Simple_repeat Simple_repeat 2 53 0 3085 152 37 20 chr3 126173719 126173790 -91863368 - L1MA9 LINE L1 -534 5778 5710 229 271 68 25 chr3 126176681 126176799 -91860359 + MIR SINE MIR 91 213 -49 214 204 0 20 chr3 126176841 126176890 -91860268 + CT-rich Low_complexity Low_complexity 1 48 0 228 135 0 0 chr3 126177231 126177268 -91859890 + (GA)n Simple_repeat Simple_repeat 1 37 0 279 317 19 10 chr3 126177700 126177804 -91859354 - MIR SINE MIR -60 202 98 348 64 0 0 chr3 126178463 126178510 -91858648 + (TG)n Simple_repeat Simple_repeat 2 48 0 234 316 0 26 chr3 126179628 126179704 -91857454 + L2 LINE L2 3232 3305 -8 795 293 140 21 chr3 126181652 126182031 -91855127 - LTR16C LTR ERVL -4 487 64 216 275 200 38 chr3 126183417 126183577 -91853581 + MIR3 SINE MIR 1 186 -22 2556 42 0 6 chr3 126185692 126186004 -91851154 + AluY SINE Alu 1 310 -1 396 285 91 83 chr3 126187707 126187949 -91849209 - MIR SINE MIR -2 260 17 * 411 302 137 38 chr3 126187947 126188159 -91848999 + MIR SINE MIR 30 262 0 30 0 0 0 chr3 126189231 126189261 -91847897 + AT_rich Low_complexity Low_complexity 1 30 0 410 126 53 33 chr3 126189261 126189555 -91847603 + (TATAA)n Simple_repeat Simple_repeat 1 299 0 956 291 166 5 chr3 126189631 126190155 -91847003 + L2 LINE L2 2710 3313 0 6687 131 37 47 chr3 126191514 126192754 -91844404 - Tigger3b DNA MER2_type -3 1228 1 904 199 0 15 chr3 126194234 126194440 -91842718 + L1MB1 LINE L1 5966 6168 0 189 389 23 53 chr3 126194570 126194701 -91842457 - L2 LINE L2 -213 3059 2933 198 171 0 0 chr3 126194793 126194834 -91842324 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 255 258 84 24 chr3 126195361 126195528 -91841630 - L1ME4a LINE L1 -201 5920 5744 369 0 0 0 chr3 126195585 126195626 -91841532 + (TG)n Simple_repeat Simple_repeat 2 42 0 261 0 0 0 chr3 126196110 126196139 -91841019 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 361 276 86 35 chr3 126196436 126196552 -91840606 - L2 LINE L2 0 3272 3151 248 384 0 0 chr3 126196561 126196673 -91840485 + L2 LINE L2 2508 2619 -695 239 389 102 6 chr3 126196735 126196902 -91840256 + L2 LINE L2 2779 2961 -353 2174 96 7 23 chr3 126196993 126197294 -91839864 - AluSg SINE Alu -14 296 1 195 288 41 0 chr3 126198407 126198480 -91838678 - MIR3 SINE MIR -4 204 129 1083 152 0 5 chr3 126198846 126199037 -91838121 - L1MA6 LINE L1 -1 6299 6110 212 365 9 9 chr3 126199477 126199584 -91837574 - MIR SINE MIR -129 133 27 211 135 0 27 chr3 126200656 126200693 -91836465 + (GAAA)n Simple_repeat Simple_repeat 4 39 0 14447 143 24 7 chr3 126200913 126203292 -91833866 - Tigger1 DNA MER2_type 0 2418 1 446 303 130 29 chr3 126204050 126204288 -91832870 - MIR SINE MIR 0 262 1 529 297 28 46 chr3 126205139 126205362 -91831796 + MIR SINE MIR 3 225 -37 314 353 113 16 chr3 126207741 126208050 -91829108 + L2 LINE L2 2931 3269 -3 1047 183 19 1 chr3 126208096 126208408 -91828750 + MLT1A1 LTR MaLR 14 365 0 24 0 0 0 chr3 126208647 126208671 -91828487 + AT_rich Low_complexity Low_complexity 1 24 0 838 272 22 0 chr3 126209145 126209329 -91827829 + MER5A DNA MER1_type 2 189 0 219 333 0 0 chr3 126211997 126212072 -91825086 + MIR SINE MIR 78 152 -56 880 201 52 10 chr3 126212400 126212594 -91824564 - MER20 DNA MER1_type 0 219 18 310 308 0 0 chr3 126212897 126212988 -91824170 - L1MC4 LINE L1 -1338 6704 6614 * 331 272 0 22 chr3 126212910 126213002 -91824156 + L1MC4 LINE L1 6614 6703 -1339 * 350 260 0 42 chr3 126212970 126213066 -91824092 - L1MC4 LINE L1 -1337 6705 6614 230 255 0 0 chr3 126213075 126213122 -91824036 + (TATG)n Simple_repeat Simple_repeat 3 49 0 612 196 45 15 chr3 126214197 126214330 -91822828 - MER20 DNA MER1_type -65 154 18 212 283 52 32 chr3 126214567 126214742 -91822416 + MIR SINE MIR 6 239 -23 237 108 0 0 chr3 126216515 126216552 -91820606 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 195 69 0 0 chr3 126216965 126216994 -91820164 + (T)n Simple_repeat Simple_repeat 1 29 0 3005 25 3 3 chr3 126217282 126217637 -91819521 - L1PA5 LINE L1 -9 6145 5791 436 181 43 0 chr3 126317647 126317763 -91719395 + L1MC3 LINE L1 3139 3259 -2887 493 151 66 0 chr3 126317763 126317929 -91719229 + (TA)n Simple_repeat Simple_repeat 2 178 0 308 151 105 47 chr3 126317929 126318015 -91719143 - L1MC4 LINE L1 -1338 6704 6614 355 56 70 0 chr3 126318016 126318087 -91719071 + (TA)n Simple_repeat Simple_repeat 1 76 0 2040 251 8 4 chr3 126318087 126318609 -91718549 + L1MC3 LINE L1 3268 3791 -2355 1384 242 67 36 chr3 126318613 126319059 -91718099 - MLT1C LTR MaLR 0 467 8 1085 229 44 4 chr3 126319066 126319337 -91717821 + L1MC3 LINE L1 3791 4072 -2074 * 3916 203 54 57 chr3 126319330 126320171 -91716987 + L1MC3 LINE L1 4990 5831 -315 180 0 0 0 chr3 126320171 126320191 -91716967 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 273 29 0 0 chr3 126320190 126320224 -91716934 + (CA)n Simple_repeat Simple_repeat 1 34 0 3916 203 54 57 chr3 126320191 126320769 -91716389 + L1MC3 LINE L1 5830 5401 -745 27 0 0 0 chr3 126321054 126321081 -91716077 + AT_rich Low_complexity Low_complexity 1 27 0 2023 123 7 3 chr3 126322251 126322559 -91714599 + AluSq SINE Alu 5 313 0 516 345 72 4 chr3 126324746 126324981 -91712177 - MIR SINE MIR -5 257 7 3095 191 22 2 chr3 126325000 126325623 -91711535 - L1MB2 LINE L1 -2 5993 5358 606 205 0 0 chr3 126325630 126325752 -91711406 - L1MB2 LINE L1 -868 5102 4981 1460 217 13 43 chr3 126325765 126326162 -91710996 - L1MA9 LINE L1 -38 6274 5890 * 2212 199 98 85 chr3 126326153 126326891 -91710267 - L1MB2 LINE L1 -965 5005 4259 912 156 35 29 chr3 126326891 126327064 -91710094 + MSTC LTR MaLR 1 174 -254 1937 246 70 16 chr3 126327064 126327337 -91709821 - L1MB2 LINE L1 -2590 3380 3123 2079 145 0 0 chr3 126327337 126327634 -91709524 + AluSx SINE Alu 1 297 -15 1937 246 70 16 chr3 126327634 126328063 -91709095 - L1MB2 LINE L1 -2847 3123 2640 21 36 0 0 chr3 126328063 126328091 -91709067 + AT_rich Low_complexity Low_complexity 1 28 0 2808 121 17 20 chr3 126328133 126328630 -91708528 - L1MA1 LINE L1 -15 6285 5779 1327 256 13 31 chr3 126328618 126329094 -91708064 - L1MB2 LINE L1 -3334 2636 2170 * 428 376 47 42 chr3 126329370 126329756 -91707402 - L1MB2 LINE L1 -5499 392 5 282 283 57 38 chr3 126331268 126331374 -91705784 + MIR SINE MIR 13 120 -142 391 361 61 18 chr3 126331505 126331785 -91705373 - L1ME4a LINE L1 -230 5891 5600 582 323 93 23 chr3 126331817 126332155 -91705003 + L1ME LINE L1 5317 5675 -487 276 77 0 0 chr3 126332163 126332202 -91704956 + (TG)n Simple_repeat Simple_repeat 2 40 0 264 272 130 0 chr3 126332418 126332510 -91704648 - MIR SINE MIR -72 190 87 2201 158 12 50 chr3 126332511 126332930 -91704228 - MER4E LTR ERV1 0 779 377 3310 147 41 7 chr3 126332934 126333492 -91703666 - MER4D LTR ERV1 -326 577 1 378 359 58 18 chr3 126334820 126335043 -91702115 + MIR SINE MIR 28 259 -3 316 346 111 6 chr3 126335048 126335210 -91701948 + MIR3 SINE MIR 20 198 -10 24 0 0 0 chr3 126335323 126335347 -91701811 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr3 126337224 126337248 -91699910 + AT_rich Low_complexity Low_complexity 1 24 0 2863 3 0 0 chr3 126337336 126337648 -91699510 + AluYb8 SINE Alu 1 312 -6 1737 125 27 8 chr3 126337863 126338150 -91699008 + AluSx SINE Alu 23 314 0 200 338 0 52 chr3 126340122 126340199 -91696959 - MIR3 SINE MIR -37 171 99 24 0 0 0 chr3 126340341 126340365 -91696793 + AT_rich Low_complexity Low_complexity 1 24 0 398 265 128 36 chr3 126340726 126340922 -91696236 - L2 LINE L2 -72 3241 3028 27 0 0 0 chr3 126341496 126341523 -91695635 + AT_rich Low_complexity Low_complexity 1 27 0 511 265 68 0 chr3 126342115 126342262 -91694896 - MIR SINE MIR -71 191 35 350 361 7 19 chr3 126344279 126344434 -91692724 - MER5A DNA MER1_type -1 188 36 331 264 0 85 chr3 126344351 126344457 -91692701 + MER5A DNA MER1_type 92 188 -1 * 25 0 0 0 chr3 126344577 126344602 -91692556 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr3 126344696 126344717 -91692441 + AT_rich Low_complexity Low_complexity 1 21 0 630 293 31 40 chr3 126346289 126346514 -91690644 + MIR SINE MIR 12 234 -28 195 42 0 0 chr3 126350136 126350160 -91686998 + (TG)n Simple_repeat Simple_repeat 2 25 0 368 20 0 20 chr3 126351404 126351454 -91685704 + (TG)n Simple_repeat Simple_repeat 2 50 0 23 0 0 0 chr3 126351555 126351578 -91685580 + AT_rich Low_complexity Low_complexity 1 23 0 2414 21 0 0 chr3 126352406 126352690 -91684468 - L1PA4 LINE L1 -1073 5073 4790 7358 35 2 0 chr3 126352690 126353778 -91683380 + L1PA4 LINE L1 5063 6152 -3 233 338 13 19 chr3 126354089 126354243 -91682915 + CT-rich Low_complexity Low_complexity 4 156 0 463 273 40 34 chr3 126354624 126354800 -91682358 + MER5B DNA MER1_type 1 177 -1 364 153 0 0 chr3 126355267 126355326 -91681832 - MER53 DNA DNA -129 60 2 312 308 80 40 chr3 126356830 126357054 -91680104 - L1ME4a LINE L1 -12 6109 5877 28 61 0 0 chr3 126357136 126357185 -91679973 + AT_rich Low_complexity Low_complexity 1 49 0 366 23 0 0 chr3 126358230 126358273 -91678885 + (CA)n Simple_repeat Simple_repeat 2 44 0 219 346 49 0 chr3 126358432 126358513 -91678645 - L2 LINE L2 -232 3081 2997 255 221 114 53 chr3 126358555 126358686 -91678472 + L2 LINE L2 3082 3220 -93 676 351 37 16 chr3 126358738 126359114 -91678044 - L2 LINE L2 -661 2653 2270 2207 116 7 7 chr3 126363430 126363740 -91673418 - AluSg SINE Alu 0 310 1 301 265 149 51 chr3 126363833 126364048 -91673110 + HAL1 LINE L1 1055 1290 -1217 491 287 28 91 chr3 126364118 126364372 -91672786 - MIR SINE MIR 0 262 25 672 283 75 12 chr3 126366738 126366978 -91670180 + MIR SINE MIR 8 262 0 21 57 0 0 chr3 126368154 126368189 -91668969 + AT_rich Low_complexity Low_complexity 1 35 0 509 261 62 31 chr3 126368858 126369019 -91668139 - MIR SINE MIR 0 262 97 259 324 28 0 chr3 126369685 126369756 -91667402 + L2 LINE L2 3232 3304 -9 1501 178 3 39 chr3 126369943 126370229 -91666929 + AluJo SINE Alu 5 280 -32 348 148 0 0 chr3 126370241 126370302 -91666856 + (GGGGA)n Simple_repeat Simple_repeat 5 65 0 284 290 67 78 chr3 126370458 126370651 -91666507 + L3 LINE CR1 949 1139 -438 315 320 25 33 chr3 126377017 126377139 -91660019 + L2 LINE L2 3172 3292 -21 219 297 77 77 chr3 126379387 126379569 -91657589 + MIR SINE MIR 25 206 -56 400 226 43 35 chr3 126380492 126380607 -91656551 - MIR SINE MIR -145 117 2 765 234 0 0 chr3 126381509 126381654 -91655504 + FRAM SINE Alu 1 145 -31 206 195 24 0 chr3 126382242 126382283 -91654875 + MER91B DNA MER1_type 22 63 -127 24 0 0 0 chr3 126384035 126384059 -91653099 + AT_rich Low_complexity Low_complexity 1 24 0 560 306 124 8 chr3 126384404 126384705 -91652453 - L2 LINE L2 -194 3078 2732 195 69 0 0 chr3 126385317 126385346 -91651812 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 705 167 9 0 chr3 126385350 126385497 -91651661 + FLAM_C SINE Alu 2 149 0 465 357 22 6 chr3 126385498 126385680 -91651478 - L2 LINE L2 -789 2525 2341 249 83 0 0 chr3 126386337 126386373 -91650785 + (TG)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr3 126386900 126386921 -91650237 + AT_rich Low_complexity Low_complexity 1 21 0 1302 126 10 15 chr3 126387365 126387563 -91649595 + AluSq SINE Alu 103 299 -14 1904 114 0 0 chr3 126388660 126388941 -91648217 + L1PA13 LINE L1 5883 6163 0 24 32 0 0 chr3 126389024 126389055 -91648103 + AT_rich Low_complexity Low_complexity 1 31 0 226 345 7 21 chr3 126389230 126389372 -91647786 + CT-rich Low_complexity Low_complexity 1 140 0 24 32 0 0 chr3 126390371 126390402 -91646756 + AT_rich Low_complexity Low_complexity 1 31 0 245 349 68 34 chr3 126390663 126390809 -91646349 - MIR SINE MIR -84 178 28 249 180 0 0 chr3 126392683 126392733 -91644425 + A-rich Low_complexity Low_complexity 4 53 0 1724 179 0 19 chr3 126396587 126396939 -91640219 - AluJo SINE Alu 0 346 1 706 183 24 24 chr3 126397447 126397616 -91639542 - MER3 DNA MER1_type -7 202 34 209 378 20 50 chr3 126397628 126397829 -91639329 - L3 LINE CR1 -61 1516 1322 200 241 148 0 chr3 126398234 126398288 -91638870 - MIR SINE MIR -194 68 7 230 201 114 60 chr3 126398440 126398589 -91638569 - MER112 DNA MER1_type -98 162 6 319 282 105 38 chr3 126399157 126399295 -91637863 - MIR SINE MIR -36 172 22 499 88 0 38 chr3 126400188 126400268 -91636890 - MADE1 DNA Mariner -3 77 1 2012 115 14 4 chr3 126401418 126401697 -91635461 + AluSc SINE Alu 13 294 -15 296 140 0 18 chr3 126401703 126401760 -91635398 + (GGAA)n Simple_repeat Simple_repeat 1 56 0 189 74 0 0 chr3 126401773 126401800 -91635358 + (TG)n Simple_repeat Simple_repeat 2 28 0 233 289 41 0 chr3 126401816 126401913 -91635245 + MER103 DNA DNA 64 164 -2 2536 59 3 0 chr3 126402843 126403150 -91634008 + AluY SINE Alu 1 308 -3 451 264 11 0 chr3 126404532 126404710 -91632448 + GA-rich Low_complexity Low_complexity 1 180 0 222 37 0 0 chr3 126404718 126404745 -91632413 + (GA)n Simple_repeat Simple_repeat 1 27 0 358 320 130 5 chr3 126405214 126405414 -91631744 - MIR SINE MIR -18 244 20 22 35 0 0 chr3 126405626 126405655 -91631503 + AT_rich Low_complexity Low_complexity 1 29 0 229 281 7 52 chr3 126405809 126405962 -91631196 - L1ME LINE L1 -216 5905 5760 676 179 0 0 chr3 126405999 126406105 -91631053 + FRAM SINE Alu 13 118 -58 349 280 42 51 chr3 126406151 126406365 -91630793 - L1ME LINE L1 -363 5758 5547 269 153 254 0 chr3 126407735 126407794 -91629364 + MIR SINE MIR 118 191 -71 962 48 0 28 chr3 126408026 126408171 -91628987 + (GAA)n Simple_repeat Simple_repeat 2 142 0 222 289 92 13 chr3 126408454 126408530 -91628628 + L2 LINE L2 3156 3237 -35 205 296 0 84 chr3 126410152 126410223 -91626935 - L2 LINE L2 -83 3189 3125 203 254 0 17 chr3 126410289 126410348 -91626810 + (TG)n Simple_repeat Simple_repeat 2 59 0 2250 114 3 0 chr3 126410895 126411194 -91625964 + AluSq SINE Alu 1 300 -13 21 36 0 0 chr3 126412813 126412841 -91624317 + AT_rich Low_complexity Low_complexity 1 28 0 40 21 0 0 chr3 126413938 126413985 -91623173 + AT_rich Low_complexity Low_complexity 1 47 0 533 301 56 20 chr3 126414445 126414641 -91622517 + MIR SINE MIR 6 208 -54 527 289 149 49 chr3 126414858 126415208 -91621950 - L2 LINE L2 -3 3310 2926 225 167 0 0 chr3 126415469 126415511 -91621647 - U5 snRNA snRNA -74 42 1 216 0 0 0 chr3 126417588 126417612 -91619546 + (T)n Simple_repeat Simple_repeat 1 24 0 199 178 55 14 chr3 126417639 126417708 -91619450 - MIR SINE MIR -27 181 104 192 125 0 0 chr3 126418616 126418648 -91618510 + (T)n Simple_repeat Simple_repeat 1 32 0 1005 293 109 8 chr3 126419303 126419908 -91617250 - L2 LINE L2 -41 3272 2593 327 141 0 0 chr3 126423671 126423735 -91613423 + (GA)n Simple_repeat Simple_repeat 1 64 0 300 53 0 0 chr3 126423951 126423989 -91613169 + (TG)n Simple_repeat Simple_repeat 1 38 0 1812 153 4 4 chr3 126424638 126424906 -91612252 + AluSx SINE Alu 37 304 -8 22 0 0 0 chr3 126425180 126425202 -91611956 + AT_rich Low_complexity Low_complexity 1 22 0 1711 148 89 82 chr3 126425843 126426268 -91610890 + MSTA LTR MaLR 1 428 0 1425 151 14 0 chr3 126426378 126426596 -91610562 - AluSg/x SINE Alu -16 296 76 232 295 117 23 chr3 126427979 126428120 -91609038 + MIR SINE MIR 44 190 -55 6634 165 21 25 chr3 126429865 126430348 -91606810 - L1MA5 LINE L1 -8 6292 5808 2247 87 0 3 chr3 126430348 126430636 -91606522 - AluSc SINE Alu -17 292 6 6634 165 21 25 chr3 126430636 126432711 -91604447 - L1MA5 LINE L1 -492 5808 3753 4016 136 65 48 chr3 126432711 126433483 -91603675 - LTR1 LTR ERV1 0 785 1 6634 165 21 25 chr3 126433483 126433697 -91603461 - L1MA5 LINE L1 -2547 3753 3540 249 318 90 16 chr3 126435114 126435359 -91601799 - L2 LINE L2 -1488 1826 1564 276 247 41 0 chr3 126436520 126436593 -91600565 + MER116 DNA Mariner 1 76 -4 274 242 11 21 chr3 126437800 126437895 -91599263 + (TA)n Simple_repeat Simple_repeat 2 95 0 23 0 0 0 chr3 126438645 126438668 -91598490 + AT_rich Low_complexity Low_complexity 1 23 0 2312 111 0 3 chr3 126440033 126440340 -91596818 - AluSx SINE Alu -6 306 1 254 331 105 23 chr3 126441264 126441397 -91595761 - MIR SINE MIR -111 151 8 2355 115 0 0 chr3 126441850 126442162 -91594996 - AluSx SINE Alu 0 312 1 1627 190 51 0 chr3 126443391 126443723 -91593435 + L1PB4 LINE L1 5807 6155 -1 2136 130 0 9 chr3 126444523 126444838 -91592320 + AluSx SINE Alu 1 312 0 1903 130 36 0 chr3 126445970 126446246 -91590912 + AluSx SINE Alu 1 286 -26 202 340 11 32 chr3 126447528 126447622 -91589536 - MIR SINE MIR -74 188 97 256 340 153 23 chr3 126447676 126447891 -91589267 - MIR SINE MIR -16 246 4 1528 200 32 20 chr3 126448131 126448531 -91588627 + LTR52 LTR ERVL 3 407 -14 224 244 0 0 chr3 126448580 126448625 -91588533 - MIR SINE MIR -108 154 110 429 70 0 0 chr3 126448637 126448694 -91588464 + (TG)n Simple_repeat Simple_repeat 1 57 0 357 356 31 25 chr3 126450461 126450624 -91586534 + MIR SINE MIR 34 197 -65 2332 81 3 10 chr3 126450836 126451132 -91586026 + AluSp SINE Alu 1 294 -19 24273 137 17 22 chr3 126451958 126451984 -91585174 - L1PA8A LINE L1 0 6446 6421 189 0 0 0 chr3 126451984 126452005 -91585153 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 24273 137 17 22 chr3 126452005 126458377 -91578781 - L1PA8A LINE L1 -25 6421 1 451 327 55 6 chr3 126459620 126459785 -91577373 + MIR SINE MIR 6 178 -84 31 0 0 0 chr3 126461228 126461259 -91575899 + AT_rich Low_complexity Low_complexity 1 31 0 638 336 20 4 chr3 126461896 126462140 -91575018 + MIR SINE MIR 15 262 0 380 248 117 14 chr3 126464024 126464169 -91572989 + MIR SINE MIR 42 201 -61 198 327 28 47 chr3 126464345 126464452 -91572706 - L2 LINE L2 -13 3259 3155 2116 108 44 3 chr3 126465522 126465819 -91571339 - AluSp SINE Alu -4 309 1 183 156 0 0 chr3 126466297 126466329 -91570829 + T-rich Low_complexity Low_complexity 1 32 0 434 278 6 44 chr3 126467264 126467444 -91569714 + G-rich Low_complexity Low_complexity 3 175 0 210 71 0 0 chr3 126467716 126467744 -91569414 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 181 217 130 43 chr3 126468049 126468118 -91569040 + L2 LINE L2 679 753 -2561 273 282 0 26 chr3 126468787 126468865 -91568293 + L2 LINE L2 3230 3305 -8 242 352 86 0 chr3 126469428 126469533 -91567625 + MIR SINE MIR 79 192 -70 1829 152 17 14 chr3 126469999 126470289 -91566869 + AluJb SINE Alu 1 291 -21 241 330 99 33 chr3 126471018 126471109 -91566049 - L2 LINE L2 -29 3243 3147 268 367 97 18 chr3 126471124 126471579 -91565579 - L2 LINE L2 -1090 2224 1734 293 324 108 11 chr3 126472212 126472390 -91564768 - MIR SINE MIR -2 260 65 614 333 83 0 chr3 126472390 126472630 -91564528 + MIR SINE MIR 1 260 -2 236 337 65 11 chr3 126474171 126474263 -91562895 - L2 LINE L2 -31 3241 3145 212 315 0 0 chr3 126474287 126474341 -91562817 - L2 LINE L2 -17 3255 3202 188 353 8 34 chr3 126474473 126474592 -91562566 - L2 LINE L2 -327 2945 2830 2212 118 0 10 chr3 126474752 126475065 -91562093 + AluSq SINE Alu 2 311 -2 23 33 0 0 chr3 126476943 126476973 -91560185 + AT_rich Low_complexity Low_complexity 1 30 0 577 217 19 25 chr3 126479029 126479186 -91557972 - MLT1K LTR MaLR -1 587 432 213 176 39 0 chr3 126479562 126479588 -91557570 + (TA)n Simple_repeat Simple_repeat 1 25 -28 180 0 0 0 chr3 126479588 126479608 -91557550 + (TG)n Simple_repeat Simple_repeat 2 21 0 213 176 39 0 chr3 126479608 126479632 -91557526 + (TA)n Simple_repeat Simple_repeat 25 53 0 25 0 0 0 chr3 126480226 126480251 -91556907 + AT_rich Low_complexity Low_complexity 1 25 0 7580 30 1 1 chr3 126480424 126481385 -91555773 - L1PA3 LINE L1 -1015 5131 4171 7778 19 1 0 chr3 126481385 126482433 -91554725 + L1PA3 LINE L1 5107 6155 0 3442 250 53 53 chr3 126483549 126485340 -91551818 + L1MCb LINE L1 3 1793 -4771 1223 181 141 25 chr3 126485340 126485616 -91551542 - AluJo SINE Alu -4 308 1 3442 250 53 53 chr3 126485616 126486207 -91550951 + L1MCb LINE L1 1793 2491 -4073 1406 199 25 4 chr3 126486207 126486328 -91550830 + AluJo SINE Alu 1 118 -194 215 79 26 0 chr3 126486328 126486366 -91550792 + (TAA)n Simple_repeat Simple_repeat 2 40 0 1406 199 25 4 chr3 126486366 126486520 -91550638 + AluJo SINE Alu 118 282 -30 3442 250 53 53 chr3 126486520 126486976 -91550182 + L1MCb LINE L1 2491 2946 -3618 347 214 219 24 chr3 126588313 126588523 -91448635 - L1ME4a LINE L1 -296 5825 5575 2108 114 0 54 chr3 126588583 126588899 -91448259 + AluSx SINE Alu 1 299 -13 2714 23 0 0 chr3 126588899 126589199 -91447959 + AluYa5 SINE Alu 1 300 -11 1341 175 71 19 chr3 126589204 126589511 -91447647 + AluJo SINE Alu 1 321 0 268 338 0 0 chr3 126589516 126589584 -91447574 - MER58 DNA MER1_type -2346 74 7 239 245 53 64 chr3 126589685 126589779 -91447379 + MIR3 SINE MIR 78 170 -38 892 189 44 40 chr3 126589926 126590201 -91446957 + LTR37B LTR ERV1 192 467 -1 292 289 102 8 chr3 126590201 126590306 -91446852 + Charlie8 DNA MER1_type 160 276 -2141 1106 181 6 0 chr3 126590411 126590593 -91446565 - MER5A DNA MER1_type 0 189 7 226 217 0 87 chr3 126590723 126590792 -91446366 + AluS SINE Alu 2 64 -244 309 175 0 90 chr3 126590829 126590898 -91446260 + AluSq/x SINE Alu 73 127 -176 696 165 9 0 chr3 126591008 126591123 -91446035 + AluJb SINE Alu 170 285 -27 459 0 0 0 chr3 126591123 126591174 -91445984 + (TATAA)n Simple_repeat Simple_repeat 4 54 0 397 306 21 48 chr3 126591461 126591647 -91445511 - MIR SINE MIR -46 216 36 428 276 0 51 chr3 126591911 126592067 -91445091 - L1MC1 LINE L1 -80 6253 6106 4816 17 6 0 chr3 126592636 126593157 -91444001 - L1PA4 LINE L1 0 6155 5632 236 0 0 0 chr3 126593158 126593185 -91443973 + L1P2 LINE L1 5643 5669 -485 * 2557 38 5 1 chr3 126593171 126593480 -91443678 + L1P2 LINE L1 5313 5624 -531 21 36 0 0 chr3 126594661 126594689 -91442469 + AT_rich Low_complexity Low_complexity 1 28 0 1010 269 111 20 chr3 126595980 126596422 -91440736 + L1MC/D LINE L1 5332 5813 -1995 10002 65 13 6 chr3 126596528 126597979 -91439179 + L1P1 LINE L1 4027 5488 -667 2414 167 3 3 chr3 126598105 126598495 -91438663 + Tigger1 DNA MER2_type 2029 2418 0 27 0 0 0 chr3 126598641 126598668 -91438490 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr3 126598942 126598967 -91438191 + AT_rich Low_complexity Low_complexity 1 25 0 1450 176 3 41 chr3 126598967 126599257 -91437901 - AluJb SINE Alu -33 279 1 207 0 0 0 chr3 126599631 126599654 -91437504 + (CA)n Simple_repeat Simple_repeat 2 24 0 221 323 15 0 chr3 126599926 126599991 -91437167 + L2 LINE L2 3248 3313 0 5223 62 12 7 chr3 126600089 126600771 -91436387 + L1PA2 LINE L1 5366 6050 -105 225 193 88 0 chr3 126601724 126601781 -91435377 + MER103 DNA DNA 105 166 0 184 390 12 0 chr3 126602009 126602091 -91435067 + MER5B DNA MER1_type 96 178 0 265 246 14 14 chr3 126602149 126602218 -91434940 + L2 LINE L2 3244 3312 -1 698 286 170 23 chr3 126602506 126602848 -91434310 - L2 LINE L2 -1 3312 2921 732 129 0 0 chr3 126602951 126603052 -91434106 + L1PA8 LINE L1 6063 6163 -9 1494 188 41 3 chr3 126604709 126605001 -91432157 + Tigger1 DNA MER2_type 23 325 -2093 216 322 58 33 chr3 126606376 126606497 -91430661 - MER5A DNA MER1_type -1 188 65 609 159 44 9 chr3 126607128 126607241 -91429917 + L1MD1 LINE L1 6118 6234 -8 385 278 133 51 chr3 126607325 126607559 -91429599 + L1ME LINE L1 5494 5746 -375 29 47 0 0 chr3 126607559 126607602 -91429556 + AT_rich Low_complexity Low_complexity 1 43 0 26 30 0 0 chr3 126607652 126607685 -91429473 + AT_rich Low_complexity Low_complexity 1 33 0 245 216 0 4 chr3 126607722 126607770 -91429388 + MIR SINE MIR 75 121 -87 384 279 134 79 chr3 126610108 126610488 -91426670 + MLT1J LTR MaLR 1 401 -110 4111 247 28 7 chr3 126610588 126611760 -91425398 + L1 LINE L1 2638 3834 -2312 359 276 10 43 chr3 126611885 126612305 -91424853 + GA-rich Low_complexity Low_complexity 1 406 0 1968 182 22 3 chr3 126612771 126613129 -91424029 - L1MB7 LINE L1 -2 6182 5818 446 221 19 10 chr3 126617356 126617460 -91419698 + MIR3 SINE MIR 98 202 -6 21 0 0 0 chr3 126617653 126617674 -91419484 + AT_rich Low_complexity Low_complexity 1 21 0 211 321 0 0 chr3 126620894 126620947 -91416211 + G-rich Low_complexity Low_complexity 2 54 0 920 239 49 29 chr3 126621800 126622043 -91415115 - MIR SINE MIR -14 248 1 6272 112 16 41 chr3 126623549 126624677 -91412481 + L1P3 LINE L1 771 1848 -4613 833 254 25 25 chr3 126625057 126625293 -91411865 - MIR SINE MIR -19 243 8 23 0 0 0 chr3 126626046 126626069 -91411089 + AT_rich Low_complexity Low_complexity 1 23 0 470 335 82 58 chr3 126626630 126626789 -91410369 + L2 LINE L2 2851 3005 -267 2140 109 10 22 chr3 126626789 126627101 -91410057 - AluSx SINE Alu -4 308 1 470 335 82 58 chr3 126627101 126627353 -91409805 + L2 LINE L2 3005 3272 0 3485 128 34 2 chr3 126628638 126629170 -91407988 - Tigger1 DNA MER2_type -1564 854 306 2936 91 2 33 chr3 126629949 126630402 -91406756 - L1P3 LINE L1 -382 5790 5352 21 0 0 0 chr3 126630496 126630517 -91406641 + AT_rich Low_complexity Low_complexity 1 21 0 299 240 60 44 chr3 126630899 126631082 -91406076 - L1P3 LINE L1 -1089 5057 4872 2735 137 2 12 chr3 126631260 126631690 -91405468 - L1PA16 LINE L1 -161 6005 5580 2049 101 4 4 chr3 126632695 126632972 -91404186 + AluSx SINE Alu 1 277 -35 195 42 0 0 chr3 126632979 126633003 -91404155 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 2438 63 3 16 chr3 126633945 126634260 -91402898 - AluY SINE Alu 0 311 1 792 342 4 4 chr3 126735603 126735843 -91301315 + MIR SINE MIR 19 258 -4 5716 50 3 4 chr3 126735892 126737176 -91299982 - L1PA3 LINE L1 -205 5950 4667 504 0 0 0 chr3 126738656 126738712 -91298446 + (TG)n Simple_repeat Simple_repeat 1 56 0 532 329 82 4 chr3 126742224 126742455 -91294703 + MIR SINE MIR 7 255 -7 22 0 0 0 chr3 126743381 126743403 -91293755 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 126743726 126743749 -91293409 + AT_rich Low_complexity Low_complexity 1 23 0 2215 114 7 0 chr3 126747421 126747719 -91289439 - AluSx SINE Alu -12 300 1 219 306 20 10 chr3 126747882 126747980 -91289178 + CT-rich Low_complexity Low_complexity 2 100 0 561 244 3 13 chr3 126747980 126748276 -91288882 + C-rich Low_complexity Low_complexity 1 293 0 1925 130 15 0 chr3 126748747 126749017 -91288141 - AluSx SINE Alu -38 274 1 2234 120 7 0 chr3 126749032 126749333 -91287825 - AluSp SINE Alu -10 303 1 239 230 90 40 chr3 126749334 126749434 -91287724 - MER46C DNA MER2_type -232 106 2 229 293 0 0 chr3 126749496 126749554 -91287604 + MIR SINE MIR 83 140 -122 841 185 62 0 chr3 126750157 126750319 -91286839 - MER5A DNA MER1_type 0 189 18 517 233 103 7 chr3 126750381 126750527 -91286631 - MIR SINE MIR -12 250 91 199 377 68 20 chr3 126751427 126751573 -91285585 - L2 LINE L2 -50 3222 3070 1765 144 32 30 chr3 126752173 126752512 -91284646 - THE1C LTR MaLR -35 340 1 23 0 0 0 chr3 126755028 126755051 -91282107 + AT_rich Low_complexity Low_complexity 1 23 0 226 341 24 12 chr3 126755637 126755719 -91281439 - L2 LINE L2 -15 3257 3175 227 293 0 0 chr3 126756351 126756426 -91280732 - Charlie2b DNA MER1_type -1852 930 856 290 293 0 0 chr3 126757065 126757147 -91280011 - MER63 DNA MER1_type -2 1060 979 399 220 156 0 chr3 126757147 126757256 -91279902 - MER63 DNA MER1_type -84 752 1 2910 201 5 5 chr3 126757317 126757945 -91279213 - L1 LINE L1 -1788 4358 3731 4795 116 11 7 chr3 126758090 126758850 -91278308 + L1MA3 LINE L1 5543 6305 0 3018 51 3 0 chr3 126759270 126759645 -91277513 - L1PA4 LINE L1 -1 6154 5779 2153 107 0 9 chr3 126759645 126759971 -91277187 - THE1C LTR MaLR -52 323 1 2267 91 44 14 chr3 126759971 126760334 -91276824 - THE1C-int LTR MaLR 0 1580 1207 216 0 0 0 chr3 126760841 126760865 -91276293 + (A)n Simple_repeat Simple_repeat 1 24 0 659 265 87 58 chr3 126763688 126764066 -91273092 + L2 LINE L2 2923 3311 -2 791 196 6 0 chr3 126764503 126764671 -91272487 - L1 LINE L1 -3600 2546 2378 2283 116 3 0 chr3 126764843 126765154 -91272004 + AluSx SINE Alu 1 312 0 634 268 102 8 chr3 126765556 126765791 -91271367 + LTR16B LTR ERVL 208 464 0 648 272 51 23 chr3 126766912 126767169 -91269989 + MLT1H LTR MaLR 37 300 -249 327 237 142 14 chr3 126767287 126767518 -91269640 + MLT1G LTR MaLR 288 590 0 1496 230 31 29 chr3 126767524 126767971 -91269187 - MER39 LTR ERV1 0 707 260 573 171 29 0 chr3 126768459 126768564 -91268594 - AluSg/x SINE Alu -15 294 187 399 260 10 20 chr3 126768626 126768726 -91268432 + MIR SINE MIR 66 164 -98 2171 85 3 57 chr3 126769996 126770314 -91266844 + AluSx SINE Alu 1 301 -11 244 265 15 0 chr3 126770356 126770424 -91266734 - MER69 DNA AcHobo -1141 85 17 21 71 0 0 chr3 126770570 126770612 -91266546 + AT_rich Low_complexity Low_complexity 1 42 0 1882 195 77 104 chr3 126771010 126771734 -91265424 - LTR8A LTR ERV1 -22 705 1 203 349 35 23 chr3 126771740 126771826 -91265332 - L2 LINE L2 -289 2983 2897 25 0 0 0 chr3 126772175 126772200 -91264958 + AT_rich Low_complexity Low_complexity 1 25 0 1534 165 12 70 chr3 126772632 126772959 -91264199 - AluJo SINE Alu -4 308 1 180 0 0 0 chr3 126773042 126773062 -91264096 + (CAA)n Simple_repeat Simple_repeat 2 21 0 201 154 0 0 chr3 126774045 126774084 -91263074 + T-rich Low_complexity Low_complexity 1 39 0 206 62 31 0 chr3 126774834 126774866 -91262292 + (CA)n Simple_repeat Simple_repeat 2 34 0 2323 123 0 0 chr3 126777430 126777739 -91259419 + AluSx SINE Alu 4 312 0 256 309 164 13 chr3 126778468 126778620 -91258538 + L2 LINE L2 3097 3271 -1 530 288 24 6 chr3 126779780 126779950 -91257208 + MER97c DNA MER1_type? 4 176 -914 23 0 0 0 chr3 126781423 126781446 -91255712 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr3 126781671 126781696 -91255462 + AT_rich Low_complexity Low_complexity 1 25 0 570 236 118 5 chr3 126783463 126783666 -91253492 - L1ME3A LINE L1 -8 6162 5937 405 250 45 0 chr3 126783682 126783794 -91253364 - L1ME3A LINE L1 -281 5889 5773 378 0 0 0 chr3 126783852 126783894 -91253264 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 24 0 0 0 chr3 126786394 126786418 -91250740 + AT_rich Low_complexity Low_complexity 1 24 0 1126 194 44 4 chr3 126786549 126786776 -91250382 + MER46A DNA MER2_type 1 236 0 219 365 24 36 chr3 126787117 126787284 -91249874 + L2 LINE L2 1859 2023 -1291 1552 279 43 11 chr3 126787407 126787877 -91249281 - L2 LINE L2 -617 2697 2213 327 192 0 0 chr3 126787942 126787994 -91249164 - L2 LINE L2 -10 3303 3252 350 313 38 23 chr3 126789350 126789481 -91247677 - MIR SINE MIR -56 152 20 566 326 111 44 chr3 126789558 126790258 -91246900 + L2 LINE L2 1993 2739 -575 501 328 50 80 chr3 126790432 126790795 -91246363 + L2 LINE L2 2916 3267 -5 233 188 62 0 chr3 126791466 126791546 -91245612 + (TA)n Simple_repeat Simple_repeat 1 85 0 24 0 0 0 chr3 126792661 126792685 -91244473 + AT_rich Low_complexity Low_complexity 1 24 0 259 272 120 0 chr3 126793091 126793183 -91243975 - MIR SINE MIR -71 137 35 1070 180 63 48 chr3 126793677 126793993 -91243165 - MER33 DNA MER1_type 0 324 4 2139 108 0 33 chr3 126794064 126794371 -91242787 - AluSx SINE Alu -15 297 1 285 172 0 0 chr3 126794570 126794634 -91242524 + (TA)n Simple_repeat Simple_repeat 1 64 0 21 36 0 0 chr3 126794741 126794769 -91242389 + AT_rich Low_complexity Low_complexity 1 28 0 204 67 0 0 chr3 126794971 126795001 -91242157 + (TTTTTA)n Simple_repeat Simple_repeat 5 34 0 245 53 0 0 chr3 126795001 126795039 -91242119 - L1PA2 LINE L1 0 6155 6118 1701 179 13 22 chr3 126795369 126795681 -91241477 + AluJb SINE Alu 1 309 -3 965 102 0 7 chr3 126795683 126795820 -91241338 + MER72 LTR ERV1 585 720 -2 363 227 13 7 chr3 126795934 126796084 -91241074 + (TG)n Simple_repeat Simple_repeat 1 151 0 23 0 0 0 chr3 126796225 126796248 -91240910 + AT_rich Low_complexity Low_complexity 1 23 0 233 268 54 0 chr3 126796438 126796494 -91240664 - MIR SINE MIR -82 180 122 1241 140 0 0 chr3 126796508 126796686 -91240472 - AluSg/x SINE Alu -7 305 128 23 0 0 0 chr3 126796913 126796936 -91240222 + AT_rich Low_complexity Low_complexity 1 23 0 257 295 74 0 chr3 126797728 126797823 -91239335 + MIR SINE MIR 106 207 -55 988 206 117 5 chr3 126797825 126798140 -91239018 + Tigger5 DNA MER2_type 1 2323 0 238 327 146 9 chr3 126798192 126798302 -91238856 - MIR SINE MIR -64 144 20 1440 222 8 48 chr3 126799400 126799756 -91237402 + MLT2C1 LTR ERVL 1 342 -55 351 0 0 0 chr3 126799805 126799844 -91237314 + (CA)n Simple_repeat Simple_repeat 1 39 0 2464 184 22 13 chr3 126799931 126800394 -91236764 + MLT1C LTR MaLR 1 467 0 1247 233 3 38 chr3 126801614 126801927 -91235231 + MLT2C1 LTR ERVL 1 302 -95 217 305 0 0 chr3 126801992 126802051 -91235107 + (CG)n Simple_repeat Simple_repeat 1 59 0 2464 184 22 13 chr3 126802146 126802609 -91234549 + MLT1C LTR MaLR 1 467 0 868 133 74 0 chr3 126803050 126803185 -91233973 + AluSg/x SINE Alu 137 281 -31 821 10 10 0 chr3 126803187 126803285 -91233873 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 409 316 26 19 chr3 126803604 126803759 -91233399 + MIR SINE MIR 51 206 -56 181 315 68 14 chr3 126804089 126804162 -91232996 + L2 LINE L2 3180 3256 -57 247 182 61 0 chr3 126804187 126804253 -91232905 - L1MA8 LINE L1 -3 6288 6219 986 239 101 42 chr3 126804880 126805306 -91231852 + MER113 DNA MER1_type? 37 487 -34 212 320 109 77 chr3 126805497 126805564 -91231594 - MIR3 SINE MIR -18 190 127 2091 116 21 0 chr3 126805564 126805849 -91231309 - AluSg SINE Alu -17 293 3 212 320 109 77 chr3 126805849 126805937 -91231221 - MIR3 SINE MIR -81 127 30 2367 124 8 19 chr3 126806081 126806460 -91230698 + THE1C LTR MaLR 1 375 0 1600 189 0 17 chr3 126806660 126806975 -91230183 - AluJb SINE Alu 0 310 1 183 204 0 0 chr3 126807185 126807234 -91229924 + CT-rich Low_complexity Low_complexity 1 49 0 2092 113 29 42 chr3 126807354 126807733 -91229425 - THE1C LTR MaLR -1 374 1 23 68 0 0 chr3 126808102 126808146 -91229012 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr3 126808270 126808291 -91228867 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 126808345 126808366 -91228792 + AT_rich Low_complexity Low_complexity 1 21 0 226 250 28 28 chr3 126808453 126808525 -91228633 + MIR SINE MIR 80 151 -111 328 346 103 39 chr3 126810036 126810242 -91226916 - L2 LINE L2 0 3313 3122 2588 37 0 0 chr3 126810242 126810541 -91226617 - AluY SINE Alu -12 299 1 328 346 103 39 chr3 126810541 126811013 -91226145 - L2 LINE L2 -191 3122 2600 24 0 0 0 chr3 126811503 126811527 -91225631 + AT_rich Low_complexity Low_complexity 1 24 0 191 285 267 12 chr3 126811852 126812017 -91225141 - MIR SINE MIR -14 248 42 584 324 52 28 chr3 126812564 126812891 -91224267 - L3b LINE CR1 -147 1436 1102 357 281 82 34 chr3 126813446 126813592 -91223566 - MIR SINE MIR -71 191 39 2181 109 38 44 chr3 126814304 126814670 -91222488 - THE1B LTR MaLR 0 364 1 1931 193 88 35 chr3 126815687 126816317 -91220841 + MER39 LTR ERV1 4 707 0 25 31 0 0 chr3 126817018 126817050 -91220108 + AT_rich Low_complexity Low_complexity 1 32 0 25 31 0 0 chr3 126817345 126817377 -91219781 + AT_rich Low_complexity Low_complexity 1 32 0 428 322 106 68 chr3 126819648 126820455 -91216703 + L2 LINE L2 2451 3312 -1 2926 128 43 32 chr3 126821428 126821934 -91215224 - MER4D LTR ERV1 0 903 392 372 58 58 0 chr3 126822089 126822141 -91215017 - MER4D LTR ERV1 -532 371 317 303 259 47 0 chr3 126822854 126822939 -91214219 + L2 LINE L2 3225 3313 0 25 65 0 0 chr3 126823552 126823598 -91213560 + AT_rich Low_complexity Low_complexity 1 46 0 26 50 0 0 chr3 126823774 126823814 -91213344 + AT_rich Low_complexity Low_complexity 1 40 0 397 306 48 113 chr3 126824228 126824600 -91212558 + L2 LINE L2 2925 3272 0 253 274 230 0 chr3 126824821 126824956 -91212202 + L1MC/D LINE L1 5667 5832 -1976 318 268 64 70 chr3 126825803 126825960 -91211198 + L2 LINE L2 3158 3313 0 742 321 18 0 chr3 126826381 126826605 -91210553 + MIR SINE MIR 23 250 -12 27 81 0 0 chr3 126826946 126827008 -91210150 + AT_rich Low_complexity Low_complexity 1 62 0 282 282 12 12 chr3 126827025 126827110 -91210048 + MIR3 SINE MIR 76 160 -48 322 290 103 0 chr3 126827180 126827325 -91209833 - MER103 DNA DNA -3 163 4 963 199 60 38 chr3 126827396 126827622 -91209536 + MER5C DNA MER1_type 2 236 -88 2283 97 0 3 chr3 126827622 126827930 -91209228 - AluY SINE Alu -4 307 1 963 199 60 38 chr3 126827930 126827970 -91209188 + MER5C DNA MER1_type 236 274 -50 269 79 0 0 chr3 126827976 126828014 -91209144 + L1ME LINE L1 5693 5730 -432 224 156 22 0 chr3 126828017 126828062 -91209096 + MER5C DNA MER1_type 277 322 -2 232 300 154 18 chr3 126828127 126828237 -91208921 + MER5A DNA MER1_type 63 187 -2 200 309 36 0 chr3 126828956 126829011 -91208147 - MER5B DNA MER1_type 0 178 122 724 149 0 0 chr3 126829012 126829119 -91208039 + U6 snRNA snRNA 1 107 0 4012 101 37 2 chr3 126829119 126829691 -91207467 + L1PA11 LINE L1 5513 6104 -70 336 284 32 21 chr3 126829691 126829786 -91207372 - MER5B DNA MER1_type -79 99 4 203 242 0 16 chr3 126830086 126830148 -91207010 + GA-rich Low_complexity Low_complexity 2 62 0 201 250 0 0 chr3 126830308 126830348 -91206810 + polypurine Low_complexity Low_complexity 1 40 0 222 159 23 0 chr3 126831277 126831321 -91205837 - L2 LINE L2 -4 3309 3265 185 286 18 0 chr3 126831567 126831623 -91205535 - L2 LINE L2 -1148 2166 2110 988 304 87 10 chr3 126832104 126832496 -91204662 + LTR16B LTR ERVL 43 464 0 23 0 0 0 chr3 126833825 126833848 -91203310 + AT_rich Low_complexity Low_complexity 1 23 0 189 320 39 0 chr3 126834476 126834554 -91202604 + MIR SINE MIR 105 185 -77 293 232 62 18 chr3 126835484 126835596 -91201562 - LTR67 LTR ERVL -67 490 374 464 346 51 0 chr3 126835974 126836130 -91201028 - MIR3 SINE MIR -18 190 27 2214 49 4 0 chr3 126836407 126836671 -91200487 - AluY SINE Alu -46 265 1 294 277 12 0 chr3 126836749 126836832 -91200326 + MIR SINE MIR 64 147 -61 184 314 81 12 chr3 126836860 126836946 -91200212 + L2 LINE L2 3221 3312 -1 201 39 0 0 chr3 126837029 126837055 -91200103 + (TC)n Simple_repeat Simple_repeat 2 27 0 208 329 0 14 chr3 126837066 126837139 -91200019 + CT-rich Low_complexity Low_complexity 1 72 0 433 298 80 7 chr3 126837955 126838106 -91199052 + MIR3 SINE MIR 21 182 -26 27 29 0 0 chr3 126838651 126838685 -91198473 + AT_rich Low_complexity Low_complexity 1 34 0 638 184 52 0 chr3 126839030 126839166 -91197992 + MER58B DNA MER1_type 199 341 0 621 292 27 23 chr3 126839166 126839385 -91197773 - L2 LINE L2 -641 2673 2454 5030 71 16 47 chr3 126840159 126840905 -91196253 + L1PA8 LINE L1 5446 6168 -4 750 204 68 6 chr3 126840922 126841084 -91196074 + FRAM SINE Alu 1 172 -4 255 234 0 0 chr3 126841596 126841643 -91195515 - MIR3 SINE MIR -3 205 159 249 289 63 63 chr3 126841827 126841986 -91195172 + MIR SINE MIR 66 224 -38 1420 164 27 81 chr3 126843923 126844250 -91192908 + AluJo SINE Alu 1 311 0 1104 176 15 15 chr3 126845631 126845868 -91191290 + AluJo SINE Alu 85 321 0 1866 131 30 0 chr3 126845872 126846139 -91191019 + AluSx SINE Alu 1 275 -37 188 0 0 69 chr3 126846145 126846174 -91190984 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 1997 114 15 0 chr3 126846981 126847253 -91189905 - AluSx SINE Alu -16 296 21 300 313 80 18 chr3 126848279 126848503 -91188655 + L1ME LINE L1 2 239 -5831 3857 193 64 47 chr3 126848969 126849762 -91187396 + MER106B DNA MER1_type 1 780 -279 991 105 0 7 chr3 126849762 126849905 -91187253 - L1PA8 LINE L1 -11 6161 6020 1664 190 0 7 chr3 126849910 126850236 -91186922 - AluJb SINE Alu 0 324 1 3857 193 64 47 chr3 126850236 126850473 -91186685 + MER106B DNA MER1_type 783 1055 -4 273 254 134 64 chr3 126850532 126851085 -91186073 + L1ME LINE L1 582 1184 -4896 2993 140 40 7 chr3 126851117 126851674 -91185484 - L1MA4A LINE L1 -6 6297 5723 2158 147 19 16 chr3 126852118 126852492 -91184666 + THE1C LTR MaLR 1 375 0 363 44 0 0 chr3 126852882 126852927 -91184231 + (CA)n Simple_repeat Simple_repeat 1 45 0 307 297 124 7 chr3 126854314 126854459 -91182699 - L2 LINE L2 0 3313 3152 183 156 0 0 chr3 126854938 126854970 -91182188 + A-rich Low_complexity Low_complexity 1 32 0 1945 161 21 0 chr3 126855746 126856075 -91181083 - THE1B LTR MaLR -28 336 1 312 102 0 0 chr3 126856141 126856190 -91180968 + (TC)n Simple_repeat Simple_repeat 2 50 0 249 196 0 0 chr3 126856364 126856420 -91180738 + (TGAA)n Simple_repeat Simple_repeat 1 56 0 392 317 90 0 chr3 126856495 126856640 -91180518 - LTR16A LTR ERVL -9 441 284 195 215 92 31 chr3 126856852 126856917 -91180241 + L3 LINE CR1 1307 1375 -202 550 269 131 0 chr3 126857517 126857677 -91179481 - MIR SINE MIR -33 229 49 288 0 0 0 chr3 126857951 126857983 -91179175 + (TG)n Simple_repeat Simple_repeat 1 32 0 279 368 111 10 chr3 126858090 126858291 -91178867 + MIR SINE MIR 13 231 -31 1678 166 86 3 chr3 126859336 126859649 -91177509 + MER44D DNA MER2_type 1 609 0 312 27 0 0 chr3 126860732 126860769 -91176389 + (CA)n Simple_repeat Simple_repeat 1 37 0 211 255 0 0 chr3 126862139 126862190 -91174968 + MIR SINE MIR 150 200 -62 248 303 73 42 chr3 126862493 126862658 -91174500 - L2 LINE L2 -222 3050 2881 6895 134 9 17 chr3 126863159 126864739 -91172419 + L1MA3 LINE L1 4743 6305 0 1587 206 31 36 chr3 126865034 126865418 -91171740 - MLT1B LTR MaLR -8 382 1 222 208 0 21 chr3 126865743 126865791 -91171367 + GA-rich Low_complexity Low_complexity 4 50 0 426 229 172 26 chr3 126867870 126868062 -91169096 - MIR SINE MIR -18 244 25 805 246 15 15 chr3 126868131 126868330 -91168828 + MIR SINE MIR 63 261 -1 263 287 11 11 chr3 126869411 126869498 -91167660 - MIR3 SINE MIR -7 201 115 26 0 0 0 chr3 126869917 126869943 -91167215 + AT_rich Low_complexity Low_complexity 1 26 0 372 316 53 18 chr3 126870171 126870342 -91166816 - MER5A DNA MER1_type -3 186 10 1155 196 66 10 chr3 126870817 126871118 -91166040 - MER33 DNA MER1_type -2 322 5 344 341 52 39 chr3 126871655 126871963 -91165195 + L2 LINE L2 1317 1628 -1686 2113 123 3 10 chr3 126872209 126872518 -91164640 + AluSx SINE Alu 1 307 -5 24 0 0 0 chr3 126873819 126873843 -91163315 + AT_rich Low_complexity Low_complexity 1 24 0 1681 193 0 16 chr3 126874162 126874467 -91162691 - AluJo SINE Alu 0 312 13 1608 97 0 0 chr3 126875093 126875319 -91161839 + L1PA13 LINE L1 5934 6159 -4 221 300 0 29 chr3 126875857 126875927 -91161231 + MIR3 SINE MIR 10 77 -131 517 66 13 0 chr3 126876649 126876725 -91160433 + L1PA11 LINE L1 6098 6174 0 1776 173 28 8 chr3 126876998 126877385 -91159773 - Charlie5 DNA MER1_type 0 2624 2230 743 135 0 16 chr3 126877375 126877501 -91159657 - Charlie5 DNA MER1_type -2488 124 1 * 1299 203 139 77 chr3 126877675 126878129 -91159029 - MLT1D LTR MaLR 0 505 24 7300 181 109 77 chr3 126880469 126881033 -91156125 - L1MC3 LINE L1 0 7785 7241 232 255 19 57 chr3 126881033 126881139 -91156019 - MLT1F1 LTR MaLR -442 125 24 7300 181 109 77 chr3 126881139 126881181 -91155977 - L1MC3 LINE L1 -544 7241 7202 228 86 0 0 chr3 126881181 126881216 -91155942 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 7300 181 109 77 chr3 126881216 126882625 -91154533 - L1MC3 LINE L1 -583 7202 5596 271 92 31 31 chr3 126883537 126883602 -91153556 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 359 271 56 0 chr3 126883722 126883829 -91153329 - MIR SINE MIR -25 237 125 2163 111 0 0 chr3 126883851 126884131 -91153027 + AluSx SINE Alu 1 280 -32 232 47 23 23 chr3 126884135 126884178 -91152980 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 182 353 71 0 chr3 126884446 126884531 -91152627 + MER5A DNA MER1_type 7 97 -92 25 0 0 0 chr3 126884778 126884803 -91152355 + AT_rich Low_complexity Low_complexity 1 25 0 195 129 0 0 chr3 126885429 126885460 -91151698 + (A)n Simple_repeat Simple_repeat 1 31 0 2224 124 0 0 chr3 126885463 126885770 -91151388 + AluSg SINE Alu 4 310 0 23 0 0 0 chr3 126886285 126886308 -91150850 + AT_rich Low_complexity Low_complexity 1 23 0 289 211 98 41 chr3 126887271 126887394 -91149764 + L1MC/D LINE L1 5694 5823 -1985 533 243 113 67 chr3 126887409 126887648 -91149510 - MIR SINE MIR -10 252 3 227 54 27 0 chr3 126887843 126887880 -91149278 + (GA)n Simple_repeat Simple_repeat 2 39 0 1807 138 20 46 chr3 126889240 126889620 -91147538 - MLT1A1 LTR MaLR -3 362 1 262 242 46 18 chr3 126891131 126891219 -91145939 - MIR SINE MIR -83 125 36 303 290 91 57 chr3 126891281 126891457 -91145701 - MER5A DNA MER1_type -6 183 2 238 359 0 0 chr3 126893044 126893108 -91144050 - L3b LINE CR1 -8 1575 1512 225 315 19 80 chr3 126893739 126893952 -91143206 - L3 LINE CR1 -216 1361 1162 210 191 48 48 chr3 126894083 126894146 -91143012 - L3 LINE CR1 -568 1009 947 533 295 200 36 chr3 126894229 126894730 -91142428 - L1ME4a LINE L1 -6 6115 5533 371 320 169 26 chr3 126894790 126895140 -91142018 - L3 LINE CR1 -772 805 406 27 29 0 0 chr3 126895839 126895873 -91141285 + AT_rich Low_complexity Low_complexity 1 34 0 29 60 0 0 chr3 126896094 126896144 -91141014 + AT_rich Low_complexity Low_complexity 1 50 0 244 265 15 0 chr3 126896552 126896620 -91140538 + MER69 DNA AcHobo 17 85 -2441 2553 53 0 0 chr3 126896662 126896962 -91140196 - AluY SINE Alu -11 300 1 33 0 0 0 chr3 126896972 126897005 -91140153 + AT_rich Low_complexity Low_complexity 1 33 0 226 353 139 25 chr3 126897082 126897204 -91139954 - MIR SINE MIR -115 147 12 2247 124 19 5 chr3 126897217 126897587 -91139571 + MER4D LTR ERV1 1 375 -497 2723 134 43 32 chr3 126897739 126898245 -91138913 + MER4D LTR ERV1 392 903 0 7753 21 0 1 chr3 126900091 126901051 -91136107 + L1PA3 LINE L1 5197 6155 0 329 67 0 0 chr3 126901485 126901530 -91135628 + MSTA LTR MaLR 1 45 -383 1285 174 107 7 chr3 126901648 126901929 -91135229 + MSTA LTR MaLR 120 428 0 195 325 188 0 chr3 126903616 126903733 -91133425 + MIR SINE MIR 57 195 -67 2498 56 3 0 chr3 126904267 126904569 -91132589 + AluY SINE Alu 2 304 -7 1839 156 3 7 chr3 126904618 126904907 -91132251 - AluSx SINE Alu -11 301 14 21 0 0 0 chr3 126905354 126905375 -91131783 + AT_rich Low_complexity Low_complexity 1 21 0 2442 100 0 65 chr3 126905537 126905861 -91131297 + THE1C LTR MaLR 1 296 -79 3158 32 3 0 chr3 126905861 126906237 -91130921 + L1PA4 LINE L1 5779 6155 0 2442 100 0 65 chr3 126906237 126906313 -91130845 + THE1C LTR MaLR 296 375 0 472 250 162 0 chr3 126906469 126906658 -91130500 + MIR SINE MIR 45 261 -1 265 284 18 46 chr3 126906672 126906781 -91130377 - MIR SINE MIR -155 107 2 21 0 0 0 chr3 126906828 126906849 -91130309 + AT_rich Low_complexity Low_complexity 1 21 0 626 303 106 47 chr3 126907565 126907754 -91129404 - L2 LINE L2 -8 3305 3129 2109 91 60 0 chr3 126907754 126908039 -91129119 + AluY SINE Alu 1 302 -9 626 303 106 47 chr3 126908039 126908368 -91128790 - L2 LINE L2 -184 3129 2761 505 217 54 0 chr3 126908408 126908537 -91128621 + MER58 DNA MER1_type 34 169 -172 859 340 173 20 chr3 126908703 126909644 -91127514 - L2 LINE L2 -2139 1175 91 869 222 0 15 chr3 126910066 126910264 -91126894 - L1PA16 LINE L1 0 6166 5972 913 153 6 12 chr3 126910271 126910441 -91126717 + L1PA16 LINE L1 5782 5950 -215 785 342 4 4 chr3 126910490 126910730 -91126428 - MIR SINE MIR -4 258 19 1936 138 38 7 chr3 126914042 126914333 -91122825 - AluSx SINE Alu -12 300 1 289 336 10 19 chr3 126914344 126914448 -91122710 + MER5A DNA MER1_type 7 109 -80 198 233 0 0 chr3 126915018 126915061 -91122097 + L2 LINE L2 3266 3308 -5 2028 116 35 32 chr3 126915126 126915437 -91121721 - AluSx SINE Alu 0 312 1 289 336 10 19 chr3 126915448 126915552 -91121606 + MER5A DNA MER1_type 7 109 -80 235 340 120 20 chr3 126916013 126916163 -91120995 + MIR SINE MIR 6 170 -92 621 287 45 18 chr3 126916756 126917087 -91120071 - L1ME4a LINE L1 -240 5881 5542 30 27 0 0 chr3 126917385 126917422 -91119736 + AT_rich Low_complexity Low_complexity 1 37 0 343 333 17 8 chr3 126917671 126917791 -91119367 + L2 LINE L2 3191 3311 -2 362 263 59 99 chr3 126918496 126918648 -91118510 + MER5B DNA MER1_type 17 162 -16 186 245 38 57 chr3 126919237 126919290 -91117868 - MIR SINE MIR -192 70 19 238 286 91 33 chr3 126919307 126919548 -91117610 - L1ME LINE L1 -345 5776 5522 22 21 0 62 chr3 126919560 126919608 -91117550 + AT_rich Low_complexity Low_complexity 1 45 0 289 405 9 0 chr3 126919779 126919890 -91117268 + L2 LINE L2 3134 3245 -27 2284 108 0 3 chr3 126921064 126921370 -91115788 + AluSc SINE Alu 1 305 -4 2193 86 23 10 chr3 126923137 126923438 -91113720 + AluSx SINE Alu 1 305 -7 2525 99 11 166 chr3 126924488 126925056 -91112102 - LTR12 LTR ERV1 -234 480 1 1423 268 36 12 chr3 126925571 126925992 -91111166 + MER70A LTR ERVL 1 431 -41 1674 141 118 20 chr3 126927558 126927906 -91109252 + L1PA16 LINE L1 5774 6155 -11 2186 99 7 10 chr3 126927914 126928217 -91108941 + AluSg SINE Alu 9 310 0 245 346 67 17 chr3 126928461 126928640 -91108518 - MIR SINE MIR -1 261 74 574 306 66 18 chr3 126928749 126929082 -91108076 - L1ME LINE L1 -1498 4648 4300 402 100 0 0 chr3 126929336 126929396 -91107762 + (CA)n Simple_repeat Simple_repeat 2 61 0 247 321 119 0 chr3 126929484 126929593 -91107565 - L1ME3A LINE L1 -37 6133 6012 628 183 0 40 chr3 126930126 126930252 -91106906 + FLAM_A SINE Alu 12 132 -10 219 388 41 25 chr3 126931802 126931923 -91105235 + MER5A DNA MER1_type 67 189 0 353 266 28 46 chr3 126931982 126932091 -91105067 + MIR SINE MIR 108 214 -48 25 65 0 0 chr3 126932171 126932217 -91104941 + AT_rich Low_complexity Low_complexity 1 46 0 330 153 0 0 chr3 126932916 126932975 -91104183 + (TG)n Simple_repeat Simple_repeat 2 60 0 1654 153 7 4 chr3 126933542 126933823 -91103335 + L1PA16 LINE L1 5885 6166 0 30 0 0 0 chr3 126933829 126933859 -91103299 + AT_rich Low_complexity Low_complexity 1 30 0 1429 169 8 38 chr3 126933874 126934141 -91103017 + AluJo SINE Alu 1 259 -53 650 226 51 23 chr3 126934200 126934303 -91102855 - MIR SINE MIR 0 262 150 2037 125 67 25 chr3 126934303 126934662 -91102496 + THE1C LTR MaLR 1 374 -1 650 226 51 23 chr3 126934662 126934735 -91102423 - MIR SINE MIR -112 150 81 461 277 151 13 chr3 126936885 126937044 -91100114 - MER5A DNA MER1_type 0 189 9 296 133 107 13 chr3 126937077 126937152 -91100006 - MER3 DNA MER1_type -8 201 120 831 159 0 8 chr3 126937154 126937280 -91099878 + FLAM_C SINE Alu 1 125 -18 558 188 26 0 chr3 126937284 126937401 -91099757 - MER3 DNA MER1_type -81 128 9 900 248 83 14 chr3 126938845 126939264 -91097894 - MER113 DNA MER1_type? -37 484 37 620 173 19 0 chr3 126939977 126940081 -91097077 + MER5A DNA MER1_type 9 114 -75 284 266 52 97 chr3 126941062 126941216 -91095942 + MIR SINE MIR 31 177 -85 2096 106 0 7 chr3 126941457 126941758 -91095400 - AluY SINE Alu -12 299 1 733 221 99 0 chr3 126942674 126942846 -91094312 - MER5A DNA MER1_type 0 189 1 2304 71 29 3 chr3 126943642 126943950 -91093208 + L1PA8 LINE L1 5853 6168 -4 296 223 34 17 chr3 126944685 126944800 -91092358 + HERVFH21 LTR ERV1 6021 7071 -321 2424 81 13 0 chr3 126944800 126945109 -91092049 - AluSp SINE Alu 0 313 1 2348 46 3 20 chr3 126945290 126945594 -91091564 - AluY SINE Alu -12 299 1 1113 154 82 5 chr3 126945597 126945792 -91091366 - AluJb SINE Alu -19 293 84 2206 91 3 10 chr3 126945982 126946146 -91091012 - AluSg SINE Alu -15 295 132 2389 92 3 6 chr3 126946146 126946460 -91090698 - AluSq SINE Alu 0 313 1 2206 91 3 10 chr3 126946460 126946592 -91090566 - AluSg SINE Alu -178 132 1 549 200 40 0 chr3 126946604 126946729 -91090429 - FLAM_A SINE Alu -3 130 1 231 88 0 0 chr3 126947613 126947647 -91089511 + (TG)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr3 126948174 126948195 -91088963 + AT_rich Low_complexity Low_complexity 1 21 0 1321 122 10 15 chr3 126948639 126948836 -91088322 + AluSq SINE Alu 103 298 -15 1884 117 0 0 chr3 126949933 126950214 -91086944 + L1PA13 LINE L1 5883 6163 0 24 32 0 0 chr3 126950297 126950328 -91086830 + AT_rich Low_complexity Low_complexity 1 31 0 226 345 7 21 chr3 126950503 126950645 -91086513 + CT-rich Low_complexity Low_complexity 1 140 0 245 349 68 34 chr3 126952137 126952283 -91084875 - MIR SINE MIR -84 178 28 249 180 0 0 chr3 126954157 126954207 -91082951 + A-rich Low_complexity Low_complexity 4 53 0 322 224 13 0 chr3 126958013 126958089 -91079069 - MER116 DNA Mariner 0 80 4 24 53 0 0 chr3 126958291 126958329 -91078829 + AT_rich Low_complexity Low_complexity 1 38 0 583 268 87 5 chr3 126959073 126959301 -91077857 - MIR SINE MIR 0 262 18 284 298 12 24 chr3 126959325 126959409 -91077749 - MIR SINE MIR -83 125 43 1835 146 22 81 chr3 126961308 126961678 -91075480 + MER7A DNA MER2_type 1 346 0 230 250 0 0 chr3 126961878 126961930 -91075228 + MIR SINE MIR 193 244 -18 2104 123 22 14 chr3 126962506 126962864 -91074294 - THE1C LTR MaLR -14 361 1 1994 81 15 0 chr3 126963452 126963724 -91073434 + L1PA8 LINE L1 5884 6159 -13 195 42 0 0 chr3 126963730 126963754 -91073404 + (TA)n Simple_repeat Simple_repeat 2 25 0 192 235 185 34 chr3 126964850 126964969 -91072189 - MIR SINE MIR -2 260 124 324 301 35 9 chr3 126965108 126965221 -91071937 - MIR SINE MIR -140 122 7 411 238 12 76 chr3 126965354 126965526 -91071632 + MER104 DNA Tc2 1 161 -19 270 290 129 26 chr3 126966086 126966241 -91070917 + MIR SINE MIR 92 262 0 25 51 0 0 chr3 126966441 126966480 -91070678 + AT_rich Low_complexity Low_complexity 1 39 0 206 222 133 0 chr3 126967245 126967290 -91069868 + L3 LINE CR1 1446 1496 -81 21 0 0 0 chr3 126967358 126967379 -91069779 + AT_rich Low_complexity Low_complexity 1 21 0 368 342 150 5 chr3 126967590 126967777 -91069381 + MIR SINE MIR 48 261 -1 3014 104 17 8 chr3 126968030 126968500 -91068658 - L1MA3 LINE L1 0 6305 5832 14609 142 21 3 chr3 126968500 126970875 -91066283 - L1M1 LINE L1 -5137 2428 10 207 100 0 0 chr3 126971022 126971052 -91066106 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 30 0 0 0 chr3 126971578 126971608 -91065550 + AT_rich Low_complexity Low_complexity 1 30 0 312 353 70 53 chr3 126973355 126973889 -91063269 - L2 LINE L2 -68 3204 2660 507 250 133 0 chr3 126974092 126974248 -91062910 + MER5A DNA MER1_type 4 183 -6 22 35 0 0 chr3 126974679 126974708 -91062450 + AT_rich Low_complexity Low_complexity 1 29 0 323 328 76 30 chr3 126975026 126975157 -91062001 + MIR3 SINE MIR 33 169 -39 475 307 73 16 chr3 126976072 126976264 -91060894 - MIR SINE MIR -49 213 11 183 333 0 0 chr3 126976502 126976550 -91060608 - MER5A DNA MER1_type 0 189 142 185 200 57 0 chr3 126976572 126976607 -91060551 + MER5A DNA MER1_type 115 151 -38 2211 179 49 5 chr3 126976650 126977058 -91060100 - MSTB LTR MaLR 0 426 1 22 0 0 0 chr3 126977381 126977403 -91059755 + AT_rich Low_complexity Low_complexity 1 22 0 453 281 8 23 chr3 126977430 126977558 -91059600 + MIR SINE MIR 49 174 -88 266 323 54 0 chr3 126977573 126977666 -91059492 - MER91C DNA MER1_type -41 99 2 2232 89 0 0 chr3 126978120 126978436 -91058722 - AluY SINE Alu 0 316 1 244 281 101 0 chr3 126978979 126979068 -91058090 - L2 LINE L2 -55 3258 3161 2261 93 7 26 chr3 126979317 126979627 -91057531 + AluSq SINE Alu 1 304 -9 266 50 25 0 chr3 126980616 126980656 -91056502 + (GA)n Simple_repeat Simple_repeat 2 42 0 607 239 68 0 chr3 126980657 126980833 -91056325 + MLT1K LTR MaLR 397 584 -4 278 281 116 27 chr3 126980834 126980980 -91056178 + L2 LINE L2 3155 3313 0 303 28 0 0 chr3 126981438 126981474 -91055684 + (CA)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr3 126982770 126982792 -91054366 + AT_rich Low_complexity Low_complexity 1 22 0 689 224 34 106 chr3 126983443 126983762 -91053396 - MLT1B LTR MaLR 0 390 75 1272 210 88 10 chr3 126985971 126986266 -91050892 + MLT1A1 LTR MaLR 48 365 0 378 0 0 0 chr3 126986521 126986563 -91050595 + (CA)n Simple_repeat Simple_repeat 2 43 0 399 294 87 87 chr3 126986834 126987321 -91049837 + L1ME4a LINE L1 3516 4006 -2140 2335 66 0 3 chr3 126987321 126987636 -91049522 + AluY SINE Alu 1 314 0 399 294 87 87 chr3 126987636 126987838 -91049320 + L1ME4a LINE L1 4005 4206 -1940 507 304 99 46 chr3 126988199 126988614 -91048544 + L1ME4a LINE L1 5611 6047 -74 804 182 76 20 chr3 126991370 126991568 -91045590 + MER3 DNA MER1_type 1 209 0 704 225 146 33 chr3 126992193 126992406 -91044752 - MIR SINE MIR -15 247 11 329 273 281 14 chr3 126993172 126993311 -91043847 - L3 LINE CR1 -13 1564 1389 750 262 111 9 chr3 126993937 126994162 -91042996 + MIR SINE MIR 15 262 0 26 0 0 0 chr3 126994345 126994371 -91042787 + AT_rich Low_complexity Low_complexity 1 26 0 295 167 61 45 chr3 126994735 126994801 -91042357 + MER63 DNA MER1_type 1 693 -143 3469 151 46 7 chr3 126994803 126995406 -91041752 - Tigger1 DNA MER2_type 0 2418 1792 2588 185 17 11 chr3 126995473 126996004 -91041154 - L1MB2 LINE L1 -3 6168 5635 2533 252 66 11 chr3 126996007 126997110 -91040048 - L1 LINE L1 -1348 4798 3583 724 180 0 8 chr3 126997731 126997859 -91039299 + FLAM_C SINE Alu 1 127 -6 205 86 0 29 chr3 126998086 126998121 -91039037 + (TTAAA)n Simple_repeat Simple_repeat 2 35 0 2091 116 21 0 chr3 126998900 126999185 -91037973 - AluSg SINE Alu -17 293 3 414 153 0 99 chr3 126999420 126999551 -91037607 + THE1C LTR MaLR 1 118 -257 24 0 0 0 chr3 126999642 126999666 -91037492 + AT_rich Low_complexity Low_complexity 1 24 0 3229 249 35 40 chr3 127000093 127000470 -91036688 - L1 LINE L1 -2585 3561 3184 19918 37 1 1 chr3 127000470 127003683 -91033475 - L1PA4 LINE L1 0 6155 2941 3229 249 35 40 chr3 127003683 127004431 -91032727 - L1 LINE L1 -2962 3184 2440 360 0 0 0 chr3 127004431 127004471 -91032687 + (TA)n Simple_repeat Simple_repeat 1 40 0 3229 249 35 40 chr3 127004471 127004532 -91032626 - L1 LINE L1 -3706 2440 2380 3725 153 7 0 chr3 127004538 127005148 -91032010 - Tigger1 DNA MER2_type -554 1864 1251 457 43 0 58 chr3 127005150 127005219 -91031939 + L1MA2 LINE L1 6234 6298 -6 186 43 0 0 chr3 127005225 127005248 -91031910 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4774 146 28 21 chr3 127005336 127006201 -91030957 - Tigger1 DNA MER2_type -1166 1252 382 4802 140 7 23 chr3 127006201 127007098 -91030060 + L1PA15 LINE L1 5171 6061 -104 327 140 18 0 chr3 127007110 127007167 -91029991 - Alu SINE Alu -2 300 243 669 135 9 0 chr3 127007172 127007283 -91029875 + L1PA15 LINE L1 6044 6155 -10 2205 153 8 19 chr3 127007293 127007671 -91029487 - Tigger1 DNA MER2_type -2021 397 24 1318 207 67 42 chr3 127007681 127008039 -91029119 + MER63 DNA MER1_type 694 1060 0 2140 69 4 0 chr3 127008189 127008450 -91028708 + AluY SINE Alu 39 300 -11 375 23 0 0 chr3 127008473 127008517 -91028641 + (CA)n Simple_repeat Simple_repeat 1 44 0 255 93 0 0 chr3 127009233 127009276 -91027882 + (TG)n Simple_repeat Simple_repeat 1 43 0 267 222 16 16 chr3 127009276 127009339 -91027819 + GA-rich Low_complexity Low_complexity 1 63 0 180 286 308 0 chr3 127010924 127011015 -91026143 - L2 LINE L2 -5 3308 3190 203 335 58 73 chr3 127011642 127012110 -91025048 - L2 LINE L2 -672 2642 2182 1461 300 35 11 chr3 127012692 127013145 -91024013 - LTR16B LTR ERVL 0 464 1 339 368 66 0 chr3 127013498 127013634 -91023524 + MIR SINE MIR 43 187 -75 244 260 27 0 chr3 127014713 127014863 -91022295 + (TA)n Simple_repeat Simple_repeat 1 154 0 244 385 90 21 chr3 127014900 127015134 -91022024 - MIR SINE MIR -6 256 7 680 208 8 0 chr3 127015501 127015626 -91021532 + FLAM_A SINE Alu 1 126 -7 27 0 0 0 chr3 127015905 127015932 -91021226 + AT_rich Low_complexity Low_complexity 1 27 0 300 93 0 0 chr3 127017138 127017181 -91019977 + MADE1 DNA Mariner 1 43 -37 2326 97 0 25 chr3 127017397 127017717 -91019441 - AluSx SINE Alu 0 312 1 1661 204 54 85 chr3 127017881 127018117 -91019041 - MLT1D LTR MaLR -1 504 262 1589 116 36 22 chr3 127018117 127018309 -91018849 - L1MA4 LINE L1 -11 6289 6090 1733 148 70 25 chr3 127018309 127018668 -91018490 + THE1C LTR MaLR 1 375 0 1589 116 36 22 chr3 127018668 127018751 -91018407 - L1MA4 LINE L1 -210 6090 6010 1661 204 54 85 chr3 127018751 127019034 -91018124 - MLT1D LTR MaLR -243 262 1 381 262 205 16 chr3 127020179 127020301 -91016857 - MER5A DNA MER1_type -30 159 15 234 319 43 11 chr3 127020512 127020606 -91016552 + MIR3 SINE MIR 58 154 -54 915 177 2 13 chr3 127020628 127020809 -91016349 - L1PA15 LINE L1 -54 6114 5935 549 0 0 0 chr3 127021236 127021297 -91015861 + (TA)n Simple_repeat Simple_repeat 2 62 0 668 310 35 35 chr3 127021806 127022067 -91015091 - MIR SINE MIR -1 261 1 454 339 110 30 chr3 127023001 127023429 -91013729 + MLT1J LTR MaLR 1 462 -49 4781 152 22 8 chr3 127023464 127024920 -91012238 - L1PA15 LINE L1 -4 6161 4680 236 323 43 12 chr3 127026560 127026724 -91010434 - LTR67 LTR ERVL -10 547 379 180 349 16 0 chr3 127027522 127027585 -91009573 - L2 LINE L2 -4 3309 3246 370 320 6 39 chr3 127029558 127029714 -91007444 + L3 LINE CR1 1335 1485 -92 281 239 0 14 chr3 127029733 127029804 -91007354 - L2 LINE L2 0 3313 3244 2272 274 111 19 chr3 127030835 127031081 -91006077 - L2 LINE L2 -268 3045 2823 2070 144 38 22 chr3 127031081 127031450 -91005708 + THE1C LTR MaLR 1 375 0 2272 274 111 19 chr3 127031450 127032056 -91005102 - L2 LINE L2 -490 2823 2108 315 328 36 62 chr3 127032240 127032432 -91004726 - MIR SINE MIR -3 259 73 306 286 135 73 chr3 127032659 127032851 -91004307 + MIR SINE MIR 48 251 -11 2229 59 14 7 chr3 127034051 127034337 -91002821 + AluY SINE Alu 1 288 -23 345 169 0 0 chr3 127034775 127034840 -91002318 + L1MA6 LINE L1 6234 6298 -2 21 0 0 0 chr3 127034844 127034865 -91002293 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr3 127035453 127035487 -91001671 + AT_rich Low_complexity Low_complexity 1 34 0 2423 88 0 0 chr3 127036494 127036800 -91000358 - AluSx SINE Alu -6 306 1 2487 77 0 0 chr3 127036999 127037310 -90999848 - AluY SINE Alu 0 311 1 180 111 0 0 chr3 127037321 127037348 -90999810 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 592 83 115 0 chr3 127037549 127037668 -90999490 + AluSg/x SINE Alu 180 309 0 443 349 37 11 chr3 127037953 127038142 -90999016 + MIR SINE MIR 57 250 -12 556 287 79 0 chr3 127038286 127038450 -90998708 - MER117 DNA MER1_type -16 181 5 23 0 0 0 chr3 127038532 127038555 -90998603 + AT_rich Low_complexity Low_complexity 1 23 0 586 321 128 30 chr3 127039905 127040310 -90996848 + L3 LINE CR1 1054 1498 -79 318 50 0 0 chr3 127040695 127040735 -90996423 + (TG)n Simple_repeat Simple_repeat 2 41 0 2162 141 0 3 chr3 127040757 127041070 -90996088 - AluSx SINE Alu 0 312 1 1787 174 37 0 chr3 127041845 127042143 -90995015 + AluJb SINE Alu 1 309 -3 193 333 152 0 chr3 127043076 127043175 -90993983 - MIR SINE MIR -26 236 123 310 162 51 6 chr3 127045276 127045360 -90991798 - THE1C LTR MaLR -331 44 1 2147 133 36 30 chr3 127045770 127046132 -90991026 - THE1B LTR MaLR 0 364 1 200 191 0 0 chr3 127047049 127047091 -90990067 - L2 LINE L2 0 3313 3272 206 281 47 0 chr3 127047346 127047410 -90989748 + L2 LINE L2 3247 3313 0 310 310 78 0 chr3 127047497 127047613 -90989545 + MIR SINE MIR 109 233 -29 35 0 0 0 chr3 127048175 127048210 -90988948 + AT_rich Low_complexity Low_complexity 1 35 0 250 169 121 48 chr3 127048325 127048408 -90988750 + L1MC4 LINE L1 6614 6702 -1340 1889 191 24 5 chr3 127048523 127048899 -90988259 - Tigger2a DNA MER2_type -45 389 7 301 295 0 30 chr3 127048901 127049067 -90988091 + (TA)n Simple_repeat Simple_repeat 2 162 0 214 193 18 35 chr3 127049103 127049160 -90987998 - MIR3 SINE MIR -141 67 12 2129 124 0 3 chr3 127049682 127049996 -90987162 - AluSq SINE Alu 0 313 1 2054 92 9 57 chr3 127051396 127051712 -90985446 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr3 127052362 127052384 -90984774 + AT_rich Low_complexity Low_complexity 1 22 0 2340 84 0 0 chr3 127052393 127052690 -90984468 - AluY SINE Alu -14 297 1 22 0 0 0 chr3 127053152 127053174 -90983984 + AT_rich Low_complexity Low_complexity 1 22 0 1367 170 8 12 chr3 127053179 127053420 -90983738 + AluSx SINE Alu 55 294 -18 669 254 57 16 chr3 127056289 127056482 -90980676 - MIR3 SINE MIR -3 205 5 429 20 0 0 chr3 127056647 127056697 -90980461 + (TA)n Simple_repeat Simple_repeat 1 50 0 365 188 12 0 chr3 127056984 127057069 -90980089 + (TAGA)n Simple_repeat Simple_repeat 4 89 0 274 251 154 11 chr3 127057108 127057295 -90979863 - L1MC/D LINE L1 -299 5822 5669 2217 106 3 7 chr3 127057437 127057738 -90979420 + AluSx SINE Alu 1 300 -12 2335 84 3 0 chr3 127057925 127058224 -90978934 - AluY SINE Alu -11 300 1 315 0 0 0 chr3 127059023 127059058 -90978100 + (TG)n Simple_repeat Simple_repeat 2 36 0 349 286 88 28 chr3 127059362 127059538 -90977620 - MIR3 SINE MIR -17 191 6 652 223 0 0 chr3 127059834 127059964 -90977194 + FLAM_A SINE Alu 10 139 -3 220 188 16 47 chr3 127060083 127060147 -90977011 + L2 LINE L2 3158 3219 -94 236 118 0 0 chr3 127060167 127060201 -90976957 - MLT1J1 LTR MaLR 0 446 413 254 128 43 43 chr3 127060283 127060330 -90976828 - MLT1J1 LTR MaLR -162 284 238 579 254 36 0 chr3 127060376 127060514 -90976644 - MLT1J2 LTR MaLR -307 143 1 648 226 39 0 chr3 127060518 127060666 -90976492 + MER34 LTR ERV1 1 123 -419 1171 163 48 7 chr3 127060681 127061044 -90976114 + MSTB LTR MaLR 1 426 0 633 208 33 55 chr3 127061177 127061360 -90975798 + MER39 LTR ERV1 355 533 -174 780 146 0 16 chr3 127061360 127061483 -90975675 + FRAM SINE Alu 35 155 -21 584 185 86 32 chr3 127061491 127061668 -90975490 + MER34 LTR ERV1 370 542 0 207 243 71 43 chr3 127061668 127061738 -90975420 + L2 LINE L2 3238 3309 -4 288 322 93 19 chr3 127062191 127062396 -90974762 - L3b LINE CR1 -98 1485 1266 282 233 0 0 chr3 127062689 127062749 -90974409 + MIR SINE MIR 91 150 -112 1073 204 56 56 chr3 127063008 127063332 -90973826 + MER33 DNA MER1_type 1 324 0 289 342 27 18 chr3 127063666 127063777 -90973381 + MIR SINE MIR 20 131 -131 2336 86 0 0 chr3 127064555 127064845 -90972313 - AluY SINE Alu -21 290 1 400 83 0 42 chr3 127065839 127065911 -90971247 + (GAAA)n Simple_repeat Simple_repeat 4 72 0 252 86 0 0 chr3 127067379 127067414 -90969744 + (CA)n Simple_repeat Simple_repeat 1 35 0 245 290 47 47 chr3 127067431 127067538 -90969620 - MIR SINE MIR -133 129 23 202 270 0 45 chr3 127068218 127068307 -90968851 + T-rich Low_complexity Low_complexity 1 85 0 412 250 10 20 chr3 127068982 127069082 -90968076 - MIR SINE MIR -98 164 66 571 171 29 0 chr3 127069144 127069249 -90967909 + AluSg/x SINE Alu 187 294 -15 268 219 125 0 chr3 127069462 127069526 -90967632 + MIR SINE MIR 12 83 -179 405 153 10 31 chr3 127070486 127070584 -90966574 + GA-rich Low_complexity Low_complexity 2 97 0 1580 104 0 0 chr3 127070923 127071154 -90966004 - AluSg/x SINE Alu 0 312 82 511 327 24 12 chr3 127071666 127071834 -90965324 - MIR3 SINE MIR -23 185 16 21 82 0 0 chr3 127071954 127072003 -90965155 + AT_rich Low_complexity Low_complexity 1 49 0 2073 223 12 46 chr3 127072671 127072833 -90964325 - L1ME1 LINE L1 -4 6162 5996 2259 122 48 20 chr3 127072833 127073187 -90963971 + THE1B LTR MaLR 1 364 0 2073 223 12 46 chr3 127073187 127073615 -90963543 - L1ME1 LINE L1 -170 5996 5592 298 337 0 30 chr3 127073734 127073835 -90963323 + MIR3 SINE MIR 81 178 -30 2184 130 0 9 chr3 127073881 127074196 -90962962 + AluSx SINE Alu 1 312 0 594 230 20 0 chr3 127074212 127074360 -90962798 - MER103 DNA DNA -7 159 9 278 301 68 19 chr3 127076856 127076959 -90960199 + MIR SINE MIR 8 115 -147 244 365 58 0 chr3 127077217 127077321 -90959837 + MIR3 SINE MIR 92 201 -7 473 235 57 102 chr3 127078470 127078734 -90958424 + MER112 DNA MER1_type 1 252 -8 357 276 0 10 chr3 127079313 127079411 -90957747 + MIR SINE MIR 41 137 -71 451 369 30 12 chr3 127080113 127080281 -90956877 - L2 LINE L2 0 3272 3102 2063 210 164 38 chr3 127080726 127081460 -90955698 - LTR1B LTR ERV1 0 826 1 939 250 27 23 chr3 127081488 127081744 -90955414 - MIR SINE MIR 0 262 6 188 236 0 55 chr3 127082177 127082232 -90954926 - MIR SINE MIR -106 156 105 199 306 14 28 chr3 127082629 127082701 -90954457 - MIR3 SINE MIR -27 181 111 236 288 43 86 chr3 127084791 127084954 -90952204 - L3 LINE CR1 -531 1046 891 361 255 167 0 chr3 127085298 127085400 -90951758 - L3 LINE CR1 -809 768 650 204 250 0 0 chr3 127085425 127085473 -90951685 + (TA)n Simple_repeat Simple_repeat 2 49 0 190 372 0 26 chr3 127085759 127085837 -90951321 - L3 LINE CR1 -1287 290 215 23 0 0 0 chr3 127087164 127087187 -90949971 + AT_rich Low_complexity Low_complexity 1 23 0 414 114 0 0 chr3 127087382 127087452 -90949706 + (TTTA)n Simple_repeat Simple_repeat 2 71 0 1843 126 68 0 chr3 127087454 127087717 -90949441 - AluSx SINE Alu -31 281 1 186 340 47 38 chr3 127090342 127090448 -90946710 + L2 LINE L2 3158 3264 -8 180 0 0 0 chr3 127090800 127090820 -90946338 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 895 278 46 33 chr3 127092627 127093038 -90944120 - LTR16C LTR ERVL -1 490 1 200 311 47 28 chr3 127093162 127093268 -90943890 + L2 LINE L2 3165 3272 -41 360 294 42 17 chr3 127094182 127094301 -90942857 + MIR SINE MIR 21 142 -66 259 318 128 38 chr3 127094401 127094612 -90942546 - MIR SINE MIR -5 257 28 461 237 49 46 chr3 127095755 127095892 -90941266 - MIR SINE MIR -65 143 57 622 301 37 23 chr3 127095916 127096132 -90941026 + MIR SINE MIR 35 253 -9 1139 197 114 16 chr3 127097768 127098087 -90939071 - MLT1A1 LTR MaLR -2 363 3 278 281 88 76 chr3 127098093 127098331 -90938827 + L3 LINE CR1 1309 1549 -28 365 215 60 79 chr3 127098804 127098956 -90938202 - MIR SINE MIR -71 191 34 3867 70 0 0 chr3 127103330 127103828 -90933330 - L1PA8 LINE L1 -1 6171 5674 612 361 108 14 chr3 127104167 127104613 -90932545 - L2 LINE L2 -406 2908 2421 288 0 0 0 chr3 127105102 127105134 -90932024 + (A)n Simple_repeat Simple_repeat 1 32 0 449 309 19 12 chr3 127106625 127106787 -90930371 - MARNA DNA Mariner -84 502 340 1121 180 52 119 chr3 127106914 127107302 -90929856 - MLT1B LTR MaLR 0 390 29 282 208 0 0 chr3 127107415 127107468 -90929690 - MLT1H LTR MaLR 0 549 497 744 298 13 39 chr3 127107635 127107910 -90929248 - MLT1H LTR MaLR -238 311 1 1269 213 163 34 chr3 127108388 127108835 -90928323 - MLT1D LTR MaLR 0 505 1 1609 182 3 21 chr3 127109839 127110125 -90927033 + AluJo SINE Alu 2 282 -30 234 0 0 0 chr3 127110131 127110157 -90927001 + (TG)n Simple_repeat Simple_repeat 1 26 0 439 156 0 0 chr3 127110189 127110266 -90926892 - MADE1 DNA Mariner 0 80 4 25 0 0 0 chr3 127111010 127111035 -90926123 + AT_rich Low_complexity Low_complexity 1 25 0 686 77 67 9 chr3 127111759 127111893 -90925265 + L1PA7 LINE L1 5919 6065 -90 556 276 4 4 chr3 127112456 127112684 -90924474 + L1PA7 LINE L1 5926 6153 -1 351 0 0 0 chr3 127112821 127112860 -90924298 + (T)n Simple_repeat Simple_repeat 1 39 0 1561 171 7 52 chr3 127112910 127113219 -90923939 + AluSx SINE Alu 1 295 -17 2442 70 0 0 chr3 127113371 127113669 -90923489 + AluSp SINE Alu 1 298 -15 21 36 0 0 chr3 127113927 127113955 -90923203 + AT_rich Low_complexity Low_complexity 1 28 0 331 314 31 18 chr3 127114265 127114491 -90922667 + L1MC/D LINE L1 3716 3944 -2202 231 285 167 14 chr3 127115283 127115504 -90921654 + L1MC/D LINE L1 4765 5019 -1127 581 264 136 35 chr3 127115719 127116117 -90921041 + L1MC/D LINE L1 5254 5691 -2117 1026 172 0 21 chr3 127116123 127116336 -90920822 - AluSc SINE Alu 0 308 100 276 30 0 0 chr3 127116552 127116585 -90920573 + (CA)n Simple_repeat Simple_repeat 2 34 0 435 340 42 0 chr3 127116988 127117132 -90920026 + MIR SINE MIR 3 152 -110 733 224 50 12 chr3 127118154 127118315 -90918843 + FRAM SINE Alu 1 167 -9 22 0 0 0 chr3 127118315 127118337 -90918821 + AT_rich Low_complexity Low_complexity 1 22 0 256 242 65 0 chr3 127118340 127118402 -90918756 + MIR SINE MIR 87 152 -56 339 309 30 47 chr3 127118420 127118653 -90918505 - L2 LINE L2 -9 3304 3076 506 315 118 25 chr3 127118801 127119039 -90918119 + MIR SINE MIR 3 262 0 1045 158 22 0 chr3 127119226 127119410 -90917748 + L1MC4 LINE L1 7708 7895 -147 339 330 0 8 chr3 127119410 127119528 -90917630 + (CATATA)n Simple_repeat Simple_repeat 3 119 0 1426 184 67 54 chr3 127119827 127120218 -90916940 + MSTD LTR MaLR 1 396 0 2529 64 0 0 chr3 127121665 127121963 -90915195 + AluY SINE Alu 1 298 -13 618 352 127 15 chr3 127122054 127122525 -90914633 + L2 LINE L2 87 610 -2704 1608 182 71 31 chr3 127122770 127123121 -90914037 + MLT1A1 LTR MaLR 1 365 0 708 242 23 9 chr3 127123131 127123350 -90913808 + L1ME2 LINE L1 4882 5103 -1043 373 200 16 0 chr3 127123350 127123459 -90913699 + AluJ/monomer SINE Alu 7 52 -247 498 103 0 0 chr3 127123555 127123642 -90913516 + (TA)n Simple_repeat Simple_repeat 2 88 0 2171 250 85 39 chr3 127124386 127125272 -90911886 + L1ME2 LINE L1 5224 6151 -13 3422 311 65 99 chr3 127128008 127128372 -90908786 - L2 LINE L2 -30 3283 2908 2715 104 3 5 chr3 127128372 127128748 -90908410 - THE1C LTR MaLR 0 375 1 3422 311 65 99 chr3 127128748 127129382 -90907776 - L2 LINE L2 -405 2908 2254 399 245 29 106 chr3 127129382 127129590 -90907568 - L1MC5 LINE L1 -51 7910 7719 3422 311 65 99 chr3 127129590 127131102 -90906056 - L2 LINE L2 -1059 2254 658 1564 196 39 0 chr3 127131102 127131388 -90905770 - AluJb SINE Alu -15 297 1 3422 311 65 99 chr3 127131388 127131708 -90905450 - L2 LINE L2 -2655 658 329 180 111 0 0 chr3 127132122 127132149 -90905009 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 394 330 5 52 chr3 127132252 127132352 -90904806 - MER5A DNA MER1_type -6 183 95 609 227 8 0 chr3 127132352 127132484 -90904674 - MER94 DNA DNA -1 133 1 394 330 5 52 chr3 127132484 127132574 -90904584 - MER5A DNA MER1_type -94 95 2 725 263 67 10 chr3 127132839 127133048 -90904110 - MIR SINE MIR -21 241 21 2143 123 7 0 chr3 127133051 127133431 -90903727 - AluSq SINE Alu 0 382 1 310 344 66 0 chr3 127133734 127133885 -90903273 - MIR SINE MIR -13 249 89 1717 172 0 14 chr3 127134202 127134493 -90902665 + AluJo SINE Alu 1 287 -25 2767 23 0 0 chr3 127134762 127135072 -90902086 + AluY SINE Alu 1 310 -1 513 309 22 11 chr3 127136562 127136740 -90900418 + MIR SINE MIR 50 229 -33 323 355 7 29 chr3 127136811 127136949 -90900209 - MIR3 SINE MIR -48 160 26 1883 149 4 0 chr3 127137078 127137387 -90899771 + AluSx SINE Alu 5 314 0 1721 180 0 7 chr3 127139679 127139963 -90897195 + AluJo SINE Alu 1 282 -30 381 22 0 0 chr3 127139966 127140012 -90897146 + (CA)n Simple_repeat Simple_repeat 2 47 0 266 336 68 7 chr3 127140255 127140446 -90896712 - MIR SINE MIR -42 220 21 1991 105 0 7 chr3 127140870 127141146 -90896012 + AluY SINE Alu 36 309 -2 871 217 0 0 chr3 127141884 127142036 -90895122 + AluJb SINE Alu 136 287 -25 291 305 182 11 chr3 127142413 127142600 -90894558 + MIR SINE MIR 34 252 -10 1875 160 6 13 chr3 127142989 127143302 -90893856 + AluSx SINE Alu 1 311 -1 357 305 8 62 chr3 127143316 127143444 -90893714 - MIR3 SINE MIR -41 167 47 25 99 0 0 chr3 127144855 127144936 -90892222 + AT_rich Low_complexity Low_complexity 1 81 0 48 18 0 0 chr3 127146360 127146415 -90890743 + AT_rich Low_complexity Low_complexity 1 55 0 1787 178 0 3 chr3 127146537 127146829 -90890329 + AluJo SINE Alu 1 291 -21 642 256 18 103 chr3 127147445 127147611 -90889547 + MIR SINE MIR 12 148 -114 2384 62 0 56 chr3 127147611 127147931 -90889227 + AluY SINE Alu 1 302 -9 642 256 18 103 chr3 127147931 127148037 -90889121 + MIR SINE MIR 148 261 -1 659 277 129 44 chr3 127148447 127148996 -90888162 - L2 LINE L2 -914 2400 1805 262 237 17 0 chr3 127149664 127149782 -90887376 + (TA)n Simple_repeat Simple_repeat 2 121 0 436 174 71 0 chr3 127149784 127149882 -90887276 - L1MB7 LINE L1 -16 6168 6064 185 265 20 0 chr3 127150491 127150540 -90886618 - L2 LINE L2 -12 3260 3211 200 222 0 22 chr3 127151071 127151116 -90886042 + CT-rich Low_complexity Low_complexity 3 46 0 22 70 0 0 chr3 127151517 127151560 -90885598 + AT_rich Low_complexity Low_complexity 1 43 0 251 339 41 8 chr3 127152360 127152481 -90884677 + MIR SINE MIR 12 136 -126 308 168 147 21 chr3 127152582 127152677 -90884481 + L1ME4a LINE L1 6013 6119 -2 1879 121 20 156 chr3 127153912 127154418 -90882740 - LTR23 LTR ERV1 0 437 1 479 43 29 0 chr3 127154519 127154589 -90882569 - L1M LINE L1 -939 5363 5292 3316 90 20 6 chr3 127154589 127155074 -90882084 + L1MA1 LINE L1 5802 6296 -6 36 0 0 0 chr3 127155074 127155110 -90882048 + AT_rich Low_complexity Low_complexity 1 36 0 2159 123 36 0 chr3 127155120 127155422 -90881736 + AluSp SINE Alu 1 313 0 274 145 24 36 chr3 127155446 127155529 -90881629 - MER69 DNA AcHobo -65 2461 2380 2497 122 17 6 chr3 127155683 127156043 -90881115 - THE1B LTR MaLR 0 364 1 232 315 0 0 chr3 127156043 127156097 -90881061 - MER69 DNA AcHobo -2461 65 12 410 53 18 0 chr3 127157513 127157570 -90879588 + (TG)n Simple_repeat Simple_repeat 2 59 0 540 0 0 0 chr3 127157721 127157781 -90879377 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 1582 180 7 11 chr3 127157781 127158064 -90879094 - AluSx SINE Alu -30 282 1 506 292 40 15 chr3 127159956 127160158 -90877000 + L2 LINE L2 2550 2756 -558 828 273 40 30 chr3 127160246 127160550 -90876608 + MLT1H LTR MaLR 45 351 -198 208 281 102 39 chr3 127160600 127160728 -90876430 - MIR SINE MIR -122 140 5 396 308 115 24 chr3 127160939 127161270 -90875888 - MARNA DNA Mariner -220 366 6 281 107 0 54 chr3 127161473 127161507 -90875651 + (T)n Simple_repeat Simple_repeat 1 33 -20 7383 68 34 20 chr3 127161507 127162994 -90874164 - SVA Other Other -991 1385 3 281 107 0 54 chr3 127162994 127163014 -90874144 + (T)n Simple_repeat Simple_repeat 33 53 0 1629 100 0 8 chr3 127163014 127163254 -90873904 - L1PB1 LINE L1 0 6151 5914 1940 164 7 3 chr3 127163972 127164282 -90872876 - AluJb SINE Alu -1 311 1 1542 234 6 9 chr3 127164301 127164630 -90872528 + MLT1A1 LTR MaLR 38 365 0 410 214 0 0 chr3 127164630 127164714 -90872444 + MIR SINE MIR 179 262 0 393 367 82 22 chr3 127165728 127166131 -90871027 - L3 LINE CR1 -575 1002 576 280 269 239 35 chr3 127166681 127166882 -90870276 - MIR SINE MIR 0 262 21 560 280 76 38 chr3 127167568 127167911 -90869247 + LTR16A LTR ERVL 17 372 -78 190 0 67 0 chr3 127168099 127168129 -90869029 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2011 82 0 0 chr3 127168132 127168377 -90868781 - AluSg1 SINE Alu -30 279 35 679 193 71 10 chr3 127168549 127168746 -90868412 - Charlie2 DNA MER1_type -5 2857 2649 2322 107 0 0 chr3 127168757 127169067 -90868091 - AluSg SINE Alu 0 310 1 1561 166 9 50 chr3 127169073 127169393 -90867765 - AluJb SINE Alu -5 307 1 1498 218 99 116 chr3 127169447 127170624 -90866534 - L1MC5 LINE L1 -59 7902 6745 493 226 115 10 chr3 127170720 127170928 -90866230 - Charlie2 DNA MER1_type -256 2606 2377 1122 289 110 44 chr3 127171010 127171851 -90865307 - Charlie2b DNA MER1_type -1792 990 1 244 235 53 66 chr3 127171959 127172095 -90865063 - L1M3 LINE L1 -618 5550 5410 407 340 84 38 chr3 127172149 127172575 -90864583 - L1M3 LINE L1 -811 5335 4890 362 322 52 60 chr3 127172640 127173670 -90863488 - L1M3 LINE L1 -1331 4815 3794 2105 110 7 27 chr3 127173777 127174078 -90863080 - AluSx SINE Alu -12 300 6 627 288 176 39 chr3 127174306 127174765 -90862393 - MLT1G1 LTR MaLR 0 595 74 449 294 58 48 chr3 127174842 127174974 -90862184 - L1M3 LINE L1 -2754 3392 3263 2061 150 0 13 chr3 127174974 127175288 -90861870 + AluSx SINE Alu 1 310 -2 449 294 58 48 chr3 127175288 127175868 -90861290 - L1M3 LINE L1 -2883 3263 2673 189 94 0 0 chr3 127176117 127176149 -90861009 + (A)n Simple_repeat Simple_repeat 1 32 0 228 254 0 0 chr3 127177189 127177248 -90859910 + T-rich Low_complexity Low_complexity 1 59 0 1291 235 79 9 chr3 127178245 127178381 -90858777 - L1ME1 LINE L1 -56 6110 5985 313 22 43 0 chr3 127178381 127178427 -90858731 + (CA)n Simple_repeat Simple_repeat 1 48 0 1291 235 79 9 chr3 127178427 127178693 -90858465 - L1ME1 LINE L1 -181 5985 5741 4074 76 7 32 chr3 127178705 127179233 -90857925 - MER41A LTR ERV1 0 554 39 2142 130 0 16 chr3 127179233 127179548 -90857610 + AluSx SINE Alu 1 310 -2 4074 76 7 32 chr3 127179548 127179587 -90857571 - MER41A LTR ERV1 -515 39 1 13061 136 68 41 chr3 127179587 127185498 -90851660 - MER41A-int LTR ERV1 -2 6568 1 198 0 0 0 chr3 127185601 127185623 -90851535 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 195 276 0 0 chr3 127186283 127186381 -90850777 + CT-rich Low_complexity Low_complexity 3 100 0 4030 68 21 27 chr3 127186895 127187069 -90850089 - MER41A LTR ERV1 0 554 381 2016 117 7 10 chr3 127187069 127187369 -90849789 - AluSq SINE Alu -9 304 6 4030 68 21 27 chr3 127187369 127187751 -90849407 - MER41A LTR ERV1 -173 381 1 443 210 0 0 chr3 127187753 127187856 -90849302 - L1ME1 LINE L1 -435 5731 5629 291 311 0 0 chr3 127188888 127188962 -90848196 - Charlie4 DNA MER1_type 0 1961 1888 231 184 102 0 chr3 127189294 127189343 -90847815 + L2 LINE L2 3246 3299 -14 568 174 5 27 chr3 127189348 127189532 -90847626 + GA-rich Low_complexity Low_complexity 1 180 0 249 326 58 23 chr3 127190110 127190196 -90846962 + MIR SINE MIR 33 121 -141 21 0 0 0 chr3 127190899 127190920 -90846238 + AT_rich Low_complexity Low_complexity 1 21 0 245 244 144 33 chr3 127190933 127191023 -90846135 - MIR SINE MIR -79 129 30 28 0 0 0 chr3 127191028 127191056 -90846102 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr3 127191126 127191161 -90845997 + AT_rich Low_complexity Low_complexity 1 35 0 181 364 52 0 chr3 127191236 127191313 -90845845 - MIR SINE MIR -75 187 107 224 275 0 72 chr3 127192994 127193063 -90844095 - L2 LINE L2 0 3313 3250 372 273 162 7 chr3 127193078 127193232 -90843926 - MIR SINE MIR -16 246 69 212 393 39 6 chr3 127194796 127194974 -90842184 - L2 LINE L2 -2 3270 3087 272 271 175 15 chr3 127197930 127198070 -90839088 + MIR SINE MIR 1 163 -45 24 67 0 0 chr3 127198950 127198995 -90838163 + AT_rich Low_complexity Low_complexity 1 45 0 260 184 13 66 chr3 127199135 127199211 -90837947 + (CATA)n Simple_repeat Simple_repeat 1 72 0 1884 295 43 34 chr3 127200288 127200933 -90836225 + MER115 DNA AcHobo 17 667 -26 483 277 108 0 chr3 127201576 127201724 -90835434 - MIR SINE MIR -86 176 13 239 235 49 25 chr3 127203408 127203489 -90833669 + L2 LINE L2 3227 3309 -4 201 175 0 0 chr3 127204253 127204293 -90832865 + (TA)n Simple_repeat Simple_repeat 2 41 0 3954 89 11 0 chr3 127205673 127206214 -90830944 + L1PA10 LINE L1 5611 6157 -11 1913 136 77 0 chr3 127208650 127208937 -90828221 - AluSx SINE Alu -3 309 1 23 54 0 0 chr3 127208989 127209026 -90828132 + AT_rich Low_complexity Low_complexity 1 37 0 21 89 0 0 chr3 127209811 127209867 -90827291 + AT_rich Low_complexity Low_complexity 1 56 0 227 257 27 27 chr3 127210110 127210184 -90826974 - L2 LINE L2 -262 3010 2937 667 336 22 0 chr3 127210599 127210822 -90826336 - MIR SINE MIR -33 229 2 225 328 41 16 chr3 127210939 127211061 -90826097 - MIR SINE MIR -65 197 73 189 0 0 0 chr3 127211081 127211102 -90826056 + (T)n Simple_repeat Simple_repeat 1 21 0 405 323 30 42 chr3 127212045 127212212 -90824946 + MIR SINE MIR 56 220 -42 615 291 24 12 chr3 127214308 127214473 -90822685 + MIR3 SINE MIR 21 187 -21 425 266 9 9 chr3 127214551 127214664 -90822494 - MER103 DNA DNA -10 156 44 7338 145 41 9 chr3 127215305 127216580 -90820578 - Tigger1 DNA MER2_type -1101 1317 2 712 191 74 11 chr3 127216580 127216769 -90820389 + L1MA9 LINE L1 6109 6309 -3 562 280 96 51 chr3 127217433 127217765 -90819393 - L1MC4a LINE L1 -1930 5878 5532 429 81 0 0 chr3 127218010 127218072 -90819086 + (TGGA)n Simple_repeat Simple_repeat 4 65 0 24 0 0 0 chr3 127218885 127218909 -90818249 + AT_rich Low_complexity Low_complexity 1 24 0 460 359 47 0 chr3 127219236 127219406 -90817752 - MIR3 SINE MIR -1 207 30 21 0 0 0 chr3 127219749 127219770 -90817388 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chr3 127221381 127221422 -90815736 + (TG)n Simple_repeat Simple_repeat 2 42 0 480 314 134 31 chr3 127221425 127221874 -90815284 + MARNA DNA Mariner 50 544 -42 296 308 103 23 chr3 127222031 127222245 -90814913 - L2 LINE L2 0 3313 3083 425 374 15 10 chr3 127222301 127222507 -90814651 - MIR SINE MIR -36 226 20 211 289 0 0 chr3 127222976 127223028 -90814130 - L2 LINE L2 -8 3305 3254 1979 270 56 18 chr3 127223753 127224382 -90812776 + L1ME3A LINE L1 5513 6165 -5 186 103 0 0 chr3 127225790 127225819 -90811339 + (CA)n Simple_repeat Simple_repeat 2 30 0 264 344 32 0 chr3 127226766 127226859 -90810299 - MIR SINE MIR -147 115 20 24 32 0 0 chr3 127226960 127226991 -90810167 + AT_rich Low_complexity Low_complexity 1 31 0 900 207 88 32 chr3 127227138 127227477 -90809681 - MSTD LTR MaLR -15 381 1 2092 118 0 10 chr3 127229763 127230060 -90807098 + AluY SINE Alu 1 294 -17 1112 158 12 158 chr3 127230071 127230253 -90806905 + MLT1B LTR MaLR 1 113 -277 1880 147 3 7 chr3 127230253 127230539 -90806619 + AluJo SINE Alu 5 289 -23 1112 158 12 158 chr3 127230539 127230690 -90806468 + MLT1B LTR MaLR 113 285 -105 1596 143 48 34 chr3 127230690 127230984 -90806174 - THE1B LTR MaLR 0 364 67 * 1938 137 22 53 chr3 127230982 127231340 -90805818 - THE1B LTR MaLR -17 347 1 617 203 8 0 chr3 127231340 127231448 -90805710 + MLT1B LTR MaLR 280 388 -2 398 316 72 41 chr3 127231462 127231946 -90805212 - L1ME2 LINE L1 -285 5879 5381 859 137 0 0 chr3 127231964 127232081 -90805077 + FLAM_C SINE Alu 3 119 -24 257 276 15 22 chr3 127232148 127232282 -90804876 - L1ME2 LINE L1 -816 5330 5198 13743 142 33 16 chr3 127232381 127234755 -90802403 + Tigger1 DNA MER2_type 3 2416 -2 1726 122 27 127 chr3 127234771 127235181 -90801977 - Tigger2 DNA MER2_type 0 2718 2350 334 232 24 0 chr3 127235183 127235265 -90801893 - Tigger2 DNA MER2_type -2589 129 46 599 191 0 9 chr3 127235265 127235380 -90801778 + U5 snRNA snRNA 3 116 0 1459 129 0 9 chr3 127235400 127235633 -90801525 + AluSg/x SINE Alu 80 310 0 2544 181 76 27 chr3 127235816 127236406 -90800752 - L1MA9 LINE L1 -213 6099 5481 465 247 66 28 chr3 127236554 127236736 -90800422 - MER112 DNA MER1_type -7 253 65 483 356 15 27 chr3 127236946 127237207 -90799951 - MIR SINE MIR 0 262 5 275 320 102 0 chr3 127237522 127237669 -90799489 + MIR SINE MIR 89 250 -12 441 312 81 24 chr3 127242406 127242653 -90794505 + MIR SINE MIR 2 262 0 29 0 0 0 chr3 127243142 127243171 -90793987 + AT_rich Low_complexity Low_complexity 1 29 0 228 252 55 39 chr3 127243376 127243503 -90793655 - L1MC/D LINE L1 -1914 5894 5766 731 259 196 22 chr3 127243562 127243971 -90793187 - L1MC/D LINE L1 -2064 5744 5265 198 0 0 0 chr3 127244447 127244469 -90792689 + (T)n Simple_repeat Simple_repeat 1 22 0 654 286 102 77 chr3 127244883 127245401 -90791757 - L3 LINE CR1 -3 1574 1044 239 220 17 17 chr3 127245569 127245628 -90791530 - MIR3 SINE MIR -25 183 125 1643 200 124 49 chr3 127245771 127246240 -90790918 + MLT1D LTR MaLR 1 504 -1 332 349 48 14 chr3 127246872 127247081 -90790077 - MIR SINE MIR -26 236 21 1336 121 11 0 chr3 127248362 127248544 -90788614 + AluSg/x SINE Alu 106 289 -21 318 50 0 0 chr3 127248587 127248627 -90788531 + (CA)n Simple_repeat Simple_repeat 2 41 0 537 318 123 40 chr3 127249012 127249436 -90787722 - L3 LINE CR1 -79 1498 1040 457 265 22 22 chr3 127249916 127250052 -90787106 - MLT1F1 LTR MaLR -418 149 14 669 292 179 8 chr3 127250541 127250904 -90786254 - MLT1D LTR MaLR 0 505 81 1982 39 13 4 chr3 127251194 127251428 -90785730 - L1PA7 LINE L1 0 6154 5919 429 308 72 29 chr3 127253580 127253788 -90783370 - MIR SINE MIR -14 248 32 282 116 0 0 chr3 127255485 127255528 -90781630 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 728 187 0 0 chr3 127255541 127255648 -90781510 - FLAM_C SINE Alu -32 111 5 266 191 250 0 chr3 127255716 127255800 -90781358 - L2 LINE L2 -1 3312 3208 223 322 77 21 chr3 127255864 127256007 -90781151 - L2 LINE L2 0 3313 3163 185 295 139 16 chr3 127256192 127256321 -90780837 - L2 LINE L2 -437 2877 2733 327 373 44 0 chr3 127256453 127256611 -90780547 - L2 LINE L2 -590 2724 2560 55 56 0 0 chr3 127256851 127256941 -90780217 + AT_rich Low_complexity Low_complexity 1 90 0 5536 93 6 46 chr3 127257268 127257833 -90779325 + L1P LINE L1 2521 3040 -3106 2115 125 4 0 chr3 127257833 127258113 -90779045 + AluSp SINE Alu 1 281 -32 5536 93 6 46 chr3 127258113 127258414 -90778744 + L1P LINE L1 3040 3352 -2794 382 304 47 47 chr3 127258548 127258719 -90778439 + MIR SINE MIR 92 262 0 6806 115 12 5 chr3 127258988 127259977 -90777181 + L1P3 LINE L1 11 1006 -5455 7213 65 11 2 chr3 127260145 127261365 -90775793 + L1PA7 LINE L1 4918 6143 -11 1497 122 9 22 chr3 127264884 127265113 -90772045 - AluSx SINE Alu -31 281 56 450 202 0 10 chr3 127266680 127266779 -90770379 + L1MC/D LINE L1 5633 5730 -2265 1001 237 53 16 chr3 127266784 127267105 -90770053 + MER41A LTR ERV1 1 333 -221 22 70 0 0 chr3 127268395 127268438 -90768720 + AT_rich Low_complexity Low_complexity 1 43 0 356 238 0 0 chr3 127269580 127269664 -90767494 - MIR SINE MIR 0 262 179 1091 273 19 13 chr3 127269664 127269972 -90767186 - MLT1A1 LTR MaLR 0 365 56 3049 214 33 27 chr3 127270390 127271229 -90765929 - L1 LINE L1 -2122 4024 3181 22 35 0 0 chr3 127272774 127272803 -90764355 + GC_rich Low_complexity Low_complexity 1 29 0 577 253 77 32 chr3 127277055 127277327 -90759831 - L1ME LINE L1 -382 5739 5455 1535 180 3 14 chr3 127277401 127277684 -90759474 + AluSx SINE Alu 1 280 -32 29 60 0 0 chr3 127277696 127277746 -90759412 + AT_rich Low_complexity Low_complexity 1 50 0 25 0 0 0 chr3 127277969 127277994 -90759164 + AT_rich Low_complexity Low_complexity 1 25 0 1532 176 7 47 chr3 127278251 127278576 -90758582 - AluJb SINE Alu 0 313 1 365 301 154 6 chr3 127280427 127280583 -90756575 - MER5A DNA MER1_type -2 187 9 1479 118 0 50 chr3 127280709 127280947 -90756211 - MER30 DNA MER1_type -4 226 1 7201 115 20 34 chr3 127282285 127283194 -90753964 + L1P LINE L1 2175 3064 -3082 2105 129 4 0 chr3 127283194 127283474 -90753684 + AluSp SINE Alu 1 281 -32 7201 115 20 34 chr3 127283474 127283787 -90753371 + L1P LINE L1 3064 3380 -2766 234 177 48 48 chr3 127283890 127283952 -90753206 + Tigger1 DNA MER2_type 2356 2417 -1 1982 132 3 11 chr3 127283984 127284271 -90752887 + AluJo SINE Alu 11 295 -17 1472 246 0 0 chr3 127284455 127284743 -90752415 + AluJb SINE Alu 1 288 -24 308 237 46 86 chr3 127284835 127284987 -90752171 - L1ME LINE L1 -1348 4798 4653 1540 115 15 56 chr3 127284992 127285262 -90751896 - L1MA9 LINE L1 0 6312 6054 210 324 0 39 chr3 127285951 127286111 -90751047 + G-rich Low_complexity Low_complexity 1 153 0 4135 133 3 5 chr3 127286232 127287387 -90749771 + L1PB3 LINE L1 4678 5829 -325 1250 117 5 30 chr3 127287387 127287584 -90749574 + AluY SINE Alu 1 192 -119 370 303 84 28 chr3 127288243 127288421 -90748737 + MIR SINE MIR 75 262 0 2213 166 69 10 chr3 127288690 127289185 -90747973 + L1P3 LINE L1 11 534 -5927 503 338 85 35 chr3 127289959 127290420 -90746738 + L2 LINE L2 2829 3312 -1 208 241 0 149 chr3 127290842 127290929 -90746229 - MIR SINE MIR -70 192 119 2237 102 6 10 chr3 127291494 127291807 -90745351 - AluSx SINE Alu 0 312 1 228 67 0 0 chr3 127292098 127292128 -90745030 + (T)n Simple_repeat Simple_repeat 1 30 0 266 266 169 16 chr3 127293777 127293901 -90743257 - MIR SINE MIR -119 143 1 23 35 6 0 chr3 127295297 127295372 -90741786 + AT_rich Low_complexity Low_complexity 1 37 0 8054 97 66 2 chr3 127296009 127297179 -90739979 + L1P LINE L1 3482 4726 -1420 21 57 0 0 chr3 127297818 127297853 -90739305 + AT_rich Low_complexity Low_complexity 1 35 0 304 275 0 0 chr3 127298481 127298572 -90738586 + C-rich Low_complexity Low_complexity 1 91 0 180 0 0 0 chr3 127299416 127299436 -90737722 + (A)n Simple_repeat Simple_repeat 1 20 0 25 0 0 0 chr3 127299908 127299933 -90737225 + AT_rich Low_complexity Low_complexity 1 25 0 327 288 46 33 chr3 127300312 127300523 -90736635 + MIR SINE MIR 7 220 -42 25 31 0 0 chr3 127300573 127300605 -90736553 + AT_rich Low_complexity Low_complexity 1 32 0 263 386 30 20 chr3 127300627 127300829 -90736329 - MIR3 SINE MIR 0 208 5 464 293 92 26 chr3 127302273 127302502 -90734656 - LTR16A LTR ERVL -6 444 201 2470 326 59 29 chr3 127302507 127304821 -90732337 - HERV16 LTR ERVL -1427 4337 1870 263 274 0 0 chr3 127304850 127304923 -90732235 - HERV16 LTR ERVL -3839 1815 1743 2698 317 78 38 chr3 127305102 127306443 -90730715 - HERV16 LTR ERVL -3550 1446 53 773 329 59 21 chr3 127306445 127306867 -90730291 - LTR16A LTR ERVL -6 444 7 2420 66 3 0 chr3 127306920 127307221 -90729937 - AluY SINE Alu -9 302 1 1497 122 9 22 chr3 127308255 127308484 -90728674 + AluSx SINE Alu 56 281 -31 1559 107 15 56 chr3 127309285 127309555 -90727603 + L1MA9 LINE L1 6054 6312 0 308 237 46 86 chr3 127309560 127309712 -90727446 + L1M4 LINE L1 4653 4798 -1348 1472 246 0 0 chr3 127309804 127310092 -90727066 - AluJb SINE Alu -24 288 1 1973 133 3 11 chr3 127310276 127310562 -90726596 - AluJo SINE Alu -18 294 11 3127 131 8 30 chr3 127310594 127311127 -90726031 - Tigger1 DNA MER2_type -1 2417 1897 248 47 0 70 chr3 127311129 127311172 -90725986 + (CTATT)n Simple_repeat Simple_repeat 2 41 0 8277 21 0 0 chr3 127311187 127312723 -90724435 - L1PA3 LINE L1 -2 6153 4618 4884 123 49 4 chr3 127312723 127312977 -90724181 - Tigger1 DNA MER2_type -694 1724 1483 1314 78 12 0 chr3 127312977 127313143 -90724015 - L1PA8 LINE L1 -1 6171 6004 4884 123 49 4 chr3 127313143 127313660 -90723498 - Tigger1 DNA MER2_type -935 1483 918 6915 241 47 36 chr3 127313812 127315892 -90721266 - L1PBa LINE L1 -4161 2702 599 668 260 0 0 chr3 127316028 127316151 -90721007 - FLAM_C SINE Alu -19 124 2 1982 132 3 11 chr3 127316335 127316622 -90720536 - AluJo SINE Alu -17 295 11 2358 167 33 6 chr3 127316654 127317134 -90720024 - Tigger1 DNA MER2_type -1 2417 1925 650 269 67 0 chr3 127317610 127317833 -90719325 - L1PBa LINE L1 -6623 240 3 183 276 81 46 chr3 127317956 127318043 -90719115 + L2 LINE L2 3182 3271 -1 297 338 29 15 chr3 127318337 127318473 -90718685 + MIR3 SINE MIR 64 201 -7 372 253 68 74 chr3 127318655 127318817 -90718341 - MIR SINE MIR -100 162 2 274 216 41 41 chr3 127319094 127319173 -90717985 + MIR SINE MIR 117 198 -64 1541 181 128 3 chr3 127319173 127319494 -90717664 - MER46B DNA MER2_type 0 236 1 274 216 41 41 chr3 127319494 127319511 -90717647 + MIR SINE MIR 197 213 -49 306 386 44 0 chr3 127320094 127320252 -90716906 - L2 LINE L2 -590 2724 2560 23 54 0 0 chr3 127320495 127320532 -90716626 + AT_rich Low_complexity Low_complexity 1 37 0 1245 138 82 41 chr3 127320545 127320808 -90716350 - L1PB4 LINE L1 0 6154 5893 2009 138 0 10 chr3 127320871 127321167 -90715991 + AluSx SINE Alu 1 293 -19 4586 239 50 33 chr3 127322977 127324385 -90712773 + L1PBa LINE L1 1310 2740 -4123 568 174 5 27 chr3 127325054 127325238 -90711920 + CT-rich Low_complexity Low_complexity 1 180 0 219 204 102 0 chr3 127325243 127325292 -90711866 - L2 LINE L2 -14 3299 3246 343 298 29 10 chr3 127326727 127326831 -90710327 - MIR SINE MIR -70 192 87 3514 158 20 40 chr3 127326994 127327688 -90709470 + PABL_A-int LTR ERV1 2357 3036 -1979 282 250 31 38 chr3 127327965 127328125 -90709033 + (CCCA)n Simple_repeat Simple_repeat 4 162 0 648 272 70 84 chr3 127328876 127329376 -90707782 - HAL1 LINE L1 -2013 494 2 198 0 0 0 chr3 127329973 127329995 -90707163 + (T)n Simple_repeat Simple_repeat 1 22 0 595 233 153 12 chr3 127335605 127335768 -90701390 - MER5A DNA MER1_type 0 189 4 1996 104 4 0 chr3 127336625 127336905 -90700253 + AluY SINE Alu 1 281 -30 222 289 0 33 chr3 127337229 127337319 -90699839 + CT-rich Low_complexity Low_complexity 2 88 0 23 54 0 0 chr3 127337857 127337894 -90699264 + AT_rich Low_complexity Low_complexity 1 37 0 1730 147 85 0 chr3 127337946 127338218 -90698940 + AluSx SINE Alu 1 295 -17 1145 97 0 0 chr3 127338706 127338861 -90698297 - MER41A LTR ERV1 -376 178 24 1808 158 3 17 chr3 127338862 127339153 -90698005 + AluSx SINE Alu 1 287 -25 24 0 0 0 chr3 127389980 127390004 -90647154 + AT_rich Low_complexity Low_complexity 1 24 0 3887 150 26 14 chr3 127390006 127390731 -90646427 - L1MA4A LINE L1 -13 6290 5557 187 368 0 0 chr3 127390862 127390930 -90646228 - L3 LINE CR1 -807 770 703 187 330 125 18 chr3 127391453 127391677 -90645481 - L2 LINE L2 -671 2643 2396 195 42 0 0 chr3 127391693 127391717 -90645441 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 882 192 24 16 chr3 127391853 127392179 -90644979 + MER93b LTR ERV1 13 373 0 2430 67 0 0 chr3 127393118 127393417 -90643741 + AluY SINE Alu 11 309 -2 182 329 24 0 chr3 127393488 127393570 -90643588 + L2 LINE L2 2226 2309 -1005 582 300 64 39 chr3 127393604 127394336 -90642822 - L1M4 LINE L1 -2129 4017 3305 1927 146 0 0 chr3 127394336 127394610 -90642548 - AluSx SINE Alu -38 274 1 582 300 64 39 chr3 127394610 127394679 -90642479 - L1M4 LINE L1 -2841 3305 3239 2510 54 0 0 chr3 127394679 127394973 -90642185 - AluY SINE Alu -15 296 3 582 300 64 39 chr3 127394973 127395104 -90642054 - L1M4 LINE L1 -2907 3239 3054 662 368 99 19 chr3 127395210 127395745 -90641413 + L3 LINE CR1 998 1575 -2 210 37 0 0 chr3 127395953 127395980 -90641178 + (TG)n Simple_repeat Simple_repeat 1 27 0 305 297 96 51 chr3 127396412 127396705 -90640453 + L2 LINE L2 2578 2883 -431 26380 53 5 1 chr3 127396830 127400995 -90636163 - L1PA5 LINE L1 -1 6153 1977 1730 190 14 0 chr3 127401130 127401478 -90635680 - L1MA4 LINE L1 -1 6299 5947 362 276 0 44 chr3 127401922 127402071 -90635087 + MLT1J LTR MaLR 18 191 -296 243 0 0 0 chr3 127402307 127402334 -90634824 + (T)n Simple_repeat Simple_repeat 1 27 0 27 29 0 0 chr3 127403329 127403363 -90633795 + AT_rich Low_complexity Low_complexity 1 34 0 180 0 0 0 chr3 127403451 127403471 -90633687 + (T)n Simple_repeat Simple_repeat 1 20 0 881 303 4 0 chr3 127404988 127405219 -90631939 + MIR SINE MIR 11 242 -20 269 289 116 50 chr3 127405464 127405585 -90631573 + MIR SINE MIR 16 144 -64 404 313 45 67 chr3 127406980 127407354 -90629804 + L1ME4a LINE L1 5599 5964 -157 238 266 51 57 chr3 127407374 127407532 -90629626 + HAL1b LINE L1 1187 1343 -5 202 239 0 0 chr3 127407565 127407611 -90629547 + (TA)n Simple_repeat Simple_repeat 1 46 0 215 353 74 8 chr3 127408342 127408464 -90628694 - L2 LINE L2 -1 3271 3142 2660 105 5 5 chr3 127409344 127409717 -90627441 - THE1C LTR MaLR 0 375 3 9540 124 69 3 chr3 127409719 127411200 -90625958 - THE1C-int LTR MaLR 0 1580 3 2150 147 19 19 chr3 127411202 127411577 -90625581 - THE1C LTR MaLR 0 375 1 375 308 131 75 chr3 127411577 127411606 -90625552 - L2 LINE L2 -671 2643 2617 2361 106 3 0 chr3 127411606 127411918 -90625240 + AluSq SINE Alu 1 313 0 375 308 131 75 chr3 127411918 127412317 -90624841 - L2 LINE L2 -697 2617 2191 693 319 30 27 chr3 127412319 127412614 -90624544 - L2 LINE L2 -3 3310 3015 493 237 35 0 chr3 127415576 127415690 -90621468 - MIR SINE MIR -10 252 135 183 129 0 0 chr3 127416050 127416081 -90621077 + (TTC)n Simple_repeat Simple_repeat 2 32 0 207 88 0 0 chr3 127416098 127416132 -90621026 + (T)n Simple_repeat Simple_repeat 1 34 0 291 122 0 0 chr3 127416966 127417015 -90620143 + (CA)n Simple_repeat Simple_repeat 2 50 0 1037 224 28 22 chr3 127417964 127418285 -90618873 - L1MC5 LINE L1 -30 7931 7609 29 0 0 0 chr3 127418412 127418441 -90618717 + AT_rich Low_complexity Low_complexity 1 29 0 743 283 32 9 chr3 127418479 127418698 -90618460 + MER58A DNA MER1_type 1 224 0 234 215 279 0 chr3 127419125 127419204 -90617954 - MIR SINE MIR -40 222 122 193 273 45 30 chr3 127422674 127422740 -90614418 + L3 LINE CR1 1279 1345 -232 947 160 41 41 chr3 127422778 127422997 -90614161 - MER20 DNA MER1_type 0 219 1 534 259 82 7 chr3 127423469 127423604 -90613554 - L2 LINE L2 -1 3312 3168 437 282 82 26 chr3 127423832 127424027 -90613131 - L3 LINE CR1 -95 1482 1277 1785 164 3 7 chr3 127424228 127424514 -90612644 + AluJo SINE Alu 1 285 -27 24 0 0 0 chr3 127425300 127425324 -90611834 + AT_rich Low_complexity Low_complexity 1 24 0 1791 148 136 0 chr3 127425559 127425889 -90611269 - THE1C LTR MaLR 0 375 1 330 280 50 0 chr3 127426839 127426939 -90610219 + MIR SINE MIR 40 144 -64 22 56 0 0 chr3 127427605 127427641 -90609517 + AT_rich Low_complexity Low_complexity 1 36 0 702 266 50 35 chr3 127428627 127428886 -90608272 + LTR33A LTR ERVL 258 520 -3 767 243 98 8 chr3 127429040 127429275 -90607883 - L1ME3A LINE L1 -13 6157 5902 5621 151 64 7 chr3 127429292 127429367 -90607791 - L1MC1 LINE L1 -6 6327 6258 373 19 37 0 chr3 127429367 127429421 -90607737 + (CA)n Simple_repeat Simple_repeat 2 57 0 5621 151 64 7 chr3 127429421 127429990 -90607168 - L1MC1 LINE L1 -75 6258 5723 423 57 143 0 chr3 127429990 127430060 -90607098 + MADE1 DNA Mariner 1 80 0 5621 151 64 7 chr3 127430060 127430517 -90606641 - L1MC1 LINE L1 -610 5723 5164 23 0 0 0 chr3 127430668 127430691 -90606467 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr3 127431498 127431527 -90605631 + AT_rich Low_complexity Low_complexity 1 29 0 6885 62 6 0 chr3 127431824 127433291 -90603867 - L1PA7 LINE L1 -5 6149 4682 277 215 13 25 chr3 127433303 127433382 -90603776 + CT-rich Low_complexity Low_complexity 3 80 0 413 297 102 34 chr3 127433619 127434179 -90602979 - L1MB4 LINE L1 -296 5884 5272 352 308 77 49 chr3 127434227 127434668 -90602490 - L1MB4 LINE L1 -940 5206 4762 308 308 28 21 chr3 127434786 127434929 -90602229 - L1MB4 LINE L1 -1503 4643 4500 241 291 74 52 chr3 127435064 127435390 -90601768 - L1MB4 LINE L1 -2155 3991 3659 257 285 99 55 chr3 127435620 127436250 -90600908 - L1MB4 LINE L1 -2869 3277 2603 2809 19 0 6 chr3 127436250 127436568 -90600590 - AluYb8 SINE Alu -2 316 1 257 285 99 55 chr3 127436568 127436737 -90600421 - L1MB4 LINE L1 -3543 2603 2443 224 415 15 23 chr3 127437250 127437403 -90599755 - MIR SINE MIR -62 146 2 22 0 0 0 chr3 127440578 127440600 -90596558 + AT_rich Low_complexity Low_complexity 1 22 0 213 146 24 0 chr3 127440841 127440882 -90596276 + (CATATA)n Simple_repeat Simple_repeat 3 44 0 211 326 78 31 chr3 127441025 127441154 -90596004 - L2 LINE L2 -8 3305 3171 554 300 110 4 chr3 127441902 127442129 -90595029 + MIR SINE MIR 9 259 -3 238 36 0 0 chr3 127443542 127443570 -90593588 + (TG)n Simple_repeat Simple_repeat 1 28 0 486 149 0 0 chr3 127443570 127443657 -90593501 + (TA)n Simple_repeat Simple_repeat 1 87 0 748 309 133 38 chr3 127443712 127444185 -90592973 + LTR33A LTR ERVL 1 518 -5 22 0 0 0 chr3 127444560 127444582 -90592576 + AT_rich Low_complexity Low_complexity 1 22 0 2404 72 0 3 chr3 127445374 127445681 -90591477 - AluY SINE Alu -5 306 1 528 45 0 0 chr3 127446245 127446312 -90590846 + (TCCA)n Simple_repeat Simple_repeat 3 69 0 281 369 45 13 chr3 127446326 127446483 -90590675 + MIR SINE MIR 51 212 -50 21 57 0 0 chr3 127446499 127446534 -90590624 + AT_rich Low_complexity Low_complexity 1 35 0 388 371 11 11 chr3 127446764 127446939 -90590219 - MIR3 SINE MIR -2 206 32 286 196 9 103 chr3 127448883 127448990 -90588168 - MIR SINE MIR -52 210 114 309 285 47 64 chr3 127449136 127449308 -90587850 + MIR SINE MIR 71 239 -23 324 378 33 6 chr3 127449356 127449536 -90587622 + L3 LINE CR1 1381 1565 -12 490 273 7 53 chr3 127449636 127449786 -90587372 - MIR SINE MIR -70 192 50 496 327 58 5 chr3 127452181 127452386 -90584772 - MIR SINE MIR -1 261 46 228 180 0 33 chr3 127452576 127452637 -90584521 + GA-rich Low_complexity Low_complexity 2 60 0 2223 148 0 0 chr3 127453004 127453362 -90583796 + L1PA16 LINE L1 5808 6165 -1 345 265 221 29 chr3 127454879 127455083 -90582075 - MIR SINE MIR 0 262 20 384 173 236 101 chr3 127455218 127455426 -90581732 - MER106A DNA MER1_type 0 236 1 408 340 21 31 chr3 127455927 127456121 -90581037 - MIR SINE MIR -6 256 65 457 330 75 24 chr3 127456995 127457427 -90579731 - L2 LINE L2 -249 3023 2571 196 264 88 22 chr3 127459122 127459213 -90577945 + L3 LINE CR1 1393 1489 -88 210 171 0 0 chr3 127459289 127459330 -90577828 + (TG)n Simple_repeat Simple_repeat 1 41 0 339 375 33 16 chr3 127459624 127459808 -90577350 + L2 LINE L2 2572 2758 -556 193 275 25 38 chr3 127459837 127459917 -90577241 - MIR SINE MIR -6 256 178 513 269 133 11 chr3 127460092 127460356 -90576802 - L1ME LINE L1 -433 5688 5393 197 200 67 33 chr3 127460384 127460444 -90576714 - MIR SINE MIR -81 181 120 324 360 107 43 chr3 127460595 127460942 -90576216 + L2 LINE L2 2896 3264 -8 426 335 18 6 chr3 127461409 127461573 -90575585 + MIR3 SINE MIR 20 185 -23 207 100 0 0 chr3 127462078 127462108 -90575050 + (CATATA)n Simple_repeat Simple_repeat 3 32 0 2036 189 58 110 chr3 127464524 127465123 -90572035 + MER82 DNA MER2_type 27 594 -59 21 57 0 0 chr3 127465672 127465707 -90571451 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr3 127465744 127465783 -90571375 + AT_rich Low_complexity Low_complexity 1 39 0 695 237 85 28 chr3 127466321 127466498 -90570660 - MER5A DNA MER1_type -1 188 2 235 209 0 0 chr3 127466527 127466570 -90570588 + MIR SINE MIR 210 252 -10 27 49 0 0 chr3 127467222 127467263 -90569895 + AT_rich Low_complexity Low_complexity 1 41 0 237 305 40 99 chr3 127467764 127467915 -90569243 - L2 LINE L2 0 3313 3172 180 319 43 35 chr3 127470527 127470643 -90566515 + L2 LINE L2 2236 2352 -962 1387 144 4 4 chr3 127470661 127470911 -90566247 + L1MA4 LINE L1 6036 6285 -15 203 167 0 21 chr3 127470911 127470959 -90566199 + (TA)n Simple_repeat Simple_repeat 1 47 0 244 303 0 0 chr3 127470962 127471051 -90566107 + L1MC4 LINE L1 6614 6702 -1340 230 200 14 14 chr3 127471033 127471103 -90566055 - L1MCa LINE L1 -4362 2064 1995 * 286 239 159 0 chr3 127472520 127472608 -90564550 - L2 LINE L2 -5 3308 3207 287 368 72 0 chr3 127473000 127473152 -90564006 - MIR3 SINE MIR -31 177 15 225 324 115 47 chr3 127473227 127473645 -90563513 - L2 LINE L2 -212 3060 2595 262 241 13 7 chr3 127474995 127475140 -90562018 - L1ME2 LINE L1 -216 5948 5761 902 148 0 0 chr3 127475229 127475357 -90561801 - AluJo SINE Alu -126 186 59 236 228 9 0 chr3 127475399 127475513 -90561645 + (TA)n Simple_repeat Simple_repeat 1 115 0 207 329 12 0 chr3 127475860 127475942 -90561216 + (CATATA)n Simple_repeat Simple_repeat 2 84 0 1777 154 4 0 chr3 127477180 127477453 -90559705 - AluJb SINE Alu -38 274 1 23 33 0 0 chr3 127477470 127477500 -90559658 + AT_rich Low_complexity Low_complexity 1 30 0 771 338 70 11 chr3 127477502 127477976 -90559182 + L2 LINE L2 1816 2317 -997 252 0 0 0 chr3 127478396 127478424 -90558734 + (GA)n Simple_repeat Simple_repeat 1 28 0 249 333 0 22 chr3 127479416 127479506 -90557652 - L2 LINE L2 -36 3236 3149 2130 106 0 0 chr3 127479596 127479902 -90557256 + AluSq SINE Alu 1 306 0 1996 155 0 13 chr3 127480137 127480453 -90556705 - AluJb SINE Alu 0 312 1 349 228 114 9 chr3 127481456 127481570 -90555588 - MIR SINE MIR -71 191 66 628 55 22 0 chr3 127481622 127481713 -90555445 + L1MA1 LINE L1 6210 6302 0 459 0 0 0 chr3 127481891 127481942 -90555216 + (TG)n Simple_repeat Simple_repeat 1 51 0 29 28 0 0 chr3 127482704 127482740 -90554418 + AT_rich Low_complexity Low_complexity 1 36 0 346 307 43 34 chr3 127483320 127483492 -90553666 + MIR SINE MIR 33 207 -55 262 311 49 79 chr3 127483651 127483815 -90553343 + MIR SINE MIR 53 211 -51 812 219 106 50 chr3 127484678 127485082 -90552076 - MLT1E3 LTR MaLR 0 624 122 388 22 0 0 chr3 127485090 127485136 -90552022 - MADE1 DNA Mariner -29 51 6 390 141 0 0 chr3 127535137 127535201 -90501957 + Tigger5 DNA MER2_type 2185 2248 -75 834 216 11 16 chr3 127535207 127535397 -90501761 + LTR47B LTR ERVL 254 442 -1 574 338 145 39 chr3 127535464 127535609 -90501549 - L2 LINE L2 -348 2966 2838 420 20 0 0 chr3 127535609 127535658 -90501500 + (TG)n Simple_repeat Simple_repeat 1 49 0 574 338 145 39 chr3 127535658 127536149 -90501009 - L2 LINE L2 -476 2838 2211 378 0 0 0 chr3 127536149 127536191 -90500967 + (TG)n Simple_repeat Simple_repeat 2 43 0 574 338 145 39 chr3 127536191 127536424 -90500734 - L2 LINE L2 -1103 2211 2004 3348 152 25 2 chr3 127536837 127537441 -90499717 + L1MC1 LINE L1 5462 6079 -254 546 295 115 12 chr3 127538284 127538623 -90498535 + L1MC4a LINE L1 5889 6262 -1546 1565 212 21 30 chr3 127539069 127539442 -90497716 - MLT1A2 LTR MaLR -4 370 1 345 267 91 21 chr3 127539537 127539724 -90497434 + L1MC4a LINE L1 6385 6584 -1224 * 614 247 37 6 chr3 127539722 127539884 -90497274 + L1MC4 LINE L1 6696 6862 -1180 468 274 0 8 chr3 127539884 127540001 -90497157 - LTR28 LTR ERV1 0 1020 905 1492 193 176 84 chr3 127540071 127540760 -90496398 - LTR28 LTR ERV1 -61 959 82 326 232 0 0 chr3 127540980 127541062 -90496096 - LTR30 LTR ERV1 -97 625 544 1044 128 122 10 chr3 127541062 127541258 -90495900 - LTR12 LTR ERV1 -437 277 60 1231 139 0 83 chr3 127541266 127541518 -90495640 - LTR12 LTR ERV1 -483 231 1 1420 225 66 7 chr3 127541654 127542094 -90495064 + L1MC4 LINE L1 6931 7396 -646 258 173 0 19 chr3 127542197 127542249 -90494909 + MLT1B LTR MaLR 336 386 -4 1742 182 30 52 chr3 127542262 127542728 -90494430 + L1MB5 LINE L1 5676 6131 -43 270 176 68 27 chr3 127542718 127542792 -90494366 + L1MA9 LINE L1 6234 6310 -2 * 441 314 118 16 chr3 127542970 127543225 -90493933 - L1M4 LINE L1 -2253 3893 3613 28 0 0 0 chr3 127543341 127543369 -90493789 + AT_rich Low_complexity Low_complexity 1 28 0 1849 272 56 23 chr3 127543459 127544363 -90492795 - L1ME3A LINE L1 -52 6118 5188 602 281 118 37 chr3 127544426 127544860 -90492298 - L1ME3A LINE L1 -2751 3395 2927 1308 189 5 110 chr3 127545367 127545775 -90491383 - MLT1A1 LTR MaLR 0 365 1 5480 215 121 41 chr3 127545775 127547027 -90490131 - MLT1A1-int LTR MaLR 0 1735 324 1996 210 109 58 chr3 127547027 127547813 -90489345 - LTR1B LTR ERV1 0 826 1 5480 215 121 41 chr3 127547813 127548166 -90488992 - MLT1A1-int LTR MaLR -1411 324 1 811 179 51 167 chr3 127548166 127548522 -90488636 - MLT1A1 LTR MaLR 0 365 62 2297 83 3 7 chr3 127548522 127548822 -90488336 + AluSg SINE Alu 1 299 -11 811 179 51 167 chr3 127548822 127548878 -90488280 - MLT1A1 LTR MaLR -303 62 1 30 0 0 0 chr3 127549696 127549726 -90487432 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr3 127550130 127550159 -90486999 + AT_rich Low_complexity Low_complexity 1 29 0 248 321 55 0 chr3 127550529 127550638 -90486520 - MIR SINE MIR -11 251 137 2203 114 0 0 chr3 127550664 127550962 -90486196 + AluSg SINE Alu 3 300 -10 5095 71 1 0 chr3 127551271 127551929 -90485229 - L1PA6 LINE L1 -1 6153 5495 198 0 0 0 chr3 127552267 127552289 -90484869 + (T)n Simple_repeat Simple_repeat 1 22 0 1399 254 54 109 chr3 127553722 127554465 -90482693 - MER21B LTR ERV1 -149 714 13 548 339 26 78 chr3 127555970 127556357 -90480801 - L2 LINE L2 -11 3261 2895 542 344 116 34 chr3 127556471 127557110 -90480048 - L2 LINE L2 -1010 2304 1614 614 113 50 94 chr3 127557397 127557557 -90479601 - Charlie5 DNA MER1_type 0 2624 2472 6287 121 58 4 chr3 127557566 127558613 -90478545 + Tigger3b DNA MER2_type 4 1107 -124 235 233 0 0 chr3 127558717 127558760 -90478398 + Tigger3b DNA MER2_type 1190 1232 0 214 179 0 0 chr3 127559276 127559315 -90477843 - L3 LINE CR1 -7 1570 1532 953 223 4 30 chr3 127559559 127559673 -90477485 + AluJb SINE Alu 23 129 -183 2455 50 13 0 chr3 127559673 127559971 -90477187 + AluY SINE Alu 1 302 -9 953 223 4 30 chr3 127559971 127560089 -90477069 + AluJb SINE Alu 129 249 -63 195 69 0 0 chr3 127562744 127562773 -90474385 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 270 380 116 0 chr3 127563550 127563671 -90473487 + L2 LINE L2 3138 3272 0 280 291 128 27 chr3 127563736 127563884 -90473274 + MIR SINE MIR 85 247 -15 1665 224 8 20 chr3 127564936 127565294 -90471864 - MLT1A1 LTR MaLR 0 365 12 336 253 88 65 chr3 127565368 127565629 -90471529 - L1ME LINE L1 -338 5783 5517 360 0 0 0 chr3 127565648 127565688 -90471470 + (CA)n Simple_repeat Simple_repeat 2 41 0 207 317 0 40 chr3 127565722 127565823 -90471335 - MIR SINE MIR -50 212 116 1341 156 246 12 chr3 127565899 127566220 -90470938 - MSTD LTR MaLR 0 396 1 22 0 0 0 chr3 127566230 127566252 -90470906 + AT_rich Low_complexity Low_complexity 1 22 0 319 129 0 29 chr3 127568107 127568177 -90468981 + (GGAA)n Simple_repeat Simple_repeat 1 68 0 238 346 69 0 chr3 127568824 127568925 -90468233 + MIR SINE MIR 44 151 -57 188 35 35 0 chr3 127569582 127569611 -90467547 + (TTG)n Simple_repeat Simple_repeat 1 30 0 261 272 39 39 chr3 127571225 127571328 -90465830 + MIR SINE MIR 156 258 -4 459 326 33 11 chr3 127572173 127572357 -90464801 + MIR SINE MIR 1 188 -74 276 355 38 16 chr3 127572496 127572679 -90464479 - MIR SINE MIR -56 206 20 218 325 25 12 chr3 127573110 127573190 -90463968 + MIR SINE MIR 182 262 0 212 328 0 0 chr3 127573414 127573472 -90463686 - L2 LINE L2 -212 3060 3003 1428 185 88 16 chr3 127574535 127574576 -90462582 - MLT2B1 LTR ERVL 0 520 483 206 95 24 0 chr3 127574576 127574618 -90462540 + (TA)n Simple_repeat Simple_repeat 2 44 0 1428 185 88 16 chr3 127574618 127575012 -90462146 - MLT2B1 LTR ERVL -37 483 1 189 107 0 0 chr3 127575287 127575315 -90461843 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 270 0 0 0 chr3 127577738 127577768 -90459390 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr3 127578843 127578864 -90458294 + AT_rich Low_complexity Low_complexity 1 21 0 239 200 0 0 chr3 127580299 127580344 -90456814 + MIR SINE MIR 211 255 -7 423 0 0 0 chr3 127580390 127580437 -90456721 + (TC)n Simple_repeat Simple_repeat 2 48 0 495 276 62 149 chr3 127581700 127581739 -90455419 - L2 LINE L2 -5 3308 3267 1524 168 31 90 chr3 127581739 127581971 -90455187 - MLT1A1 LTR MaLR 0 365 164 1819 145 0 8 chr3 127581971 127582233 -90454925 - AluSx SINE Alu -32 280 21 1524 168 31 90 chr3 127582233 127582388 -90454770 - MLT1A1 LTR MaLR -201 164 1 495 276 62 149 chr3 127582388 127582845 -90454313 - L2 LINE L2 -46 3267 2855 2010 239 58 30 chr3 127582995 127584245 -90452913 - L1ME3 LINE L1 -1 6161 4839 926 259 101 48 chr3 127584246 127584582 -90452576 - L2 LINE L2 -603 2711 2358 327 348 39 47 chr3 127584731 127585010 -90452148 + L2 LINE L2 2268 2544 -770 411 299 124 51 chr3 127585132 127585366 -90451792 + MIR SINE MIR 9 259 -3 2362 97 0 3 chr3 127585990 127586301 -90450857 - AluSx SINE Alu -2 310 1 221 410 22 22 chr3 127586560 127586694 -90450464 + L2 LINE L2 2968 3101 -171 631 237 111 30 chr3 127586710 127586908 -90450250 + MER20 DNA MER1_type 6 219 0 377 311 61 20 chr3 127586921 127587069 -90450089 + L2 LINE L2 3117 3270 -2 225 405 61 7 chr3 127587079 127587227 -90449931 + L2 LINE L2 3116 3271 -1 266 330 107 34 chr3 127588291 127588497 -90448661 + MIR SINE MIR 28 248 -14 2340 178 107 0 chr3 127588598 127589122 -90448036 - L1MC3 LINE L1 -7 7778 7199 261 310 0 17 chr3 127589124 127589240 -90447918 - MLT1F1 LTR MaLR -433 134 21 1232 218 24 104 chr3 127589260 127589303 -90447855 - MLT2C1 LTR ERVL -8 389 344 195 42 0 0 chr3 127589303 127589327 -90447831 + (TAGA)n Simple_repeat Simple_repeat 1 24 0 1232 218 24 104 chr3 127589327 127589706 -90447452 - MLT2C1 LTR ERVL -53 344 1 351 140 0 0 chr3 127589807 127589857 -90447301 + THE1A LTR MaLR 306 355 0 2382 213 62 15 chr3 127589887 127590644 -90446514 - L1MC3 LINE L1 -1239 6559 5721 2032 141 3 0 chr3 127592001 127592298 -90444860 - AluSx SINE Alu -14 298 1 9046 195 51 65 chr3 127592638 127594637 -90442521 + L1M1 LINE L1 12 2038 -5527 252 0 0 0 chr3 127594637 127594665 -90442493 + (CAA)n Simple_repeat Simple_repeat 2 29 0 9046 195 51 65 chr3 127594665 127595217 -90441941 + L1M1 LINE L1 2038 2596 -4969 2319 103 7 0 chr3 127595217 127595527 -90441631 + AluSp SINE Alu 2 313 0 9046 195 51 65 chr3 127595527 127597966 -90439192 + L1M1 LINE L1 2596 5606 -1959 4177 170 14 17 chr3 127597983 127598502 -90438656 + L1M1 LINE L1 5964 6483 -1241 1151 120 16 5 chr3 127598502 127598686 -90438472 + MER30B DNA MER1_type 1 186 -4 4177 170 14 17 chr3 127598686 127599227 -90437931 + L1M1 LINE L1 6483 7021 -703 243 0 0 0 chr3 127599227 127599254 -90437904 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4177 170 14 17 chr3 127599254 127599445 -90437713 + L1M1 LINE L1 7021 7211 -513 2507 195 32 11 chr3 127599547 127600110 -90437048 + L1MA3 LINE L1 5731 6305 0 468 264 137 60 chr3 127600150 127600650 -90436508 - MLT1H LTR MaLR -1 554 3 3958 95 19 23 chr3 127603759 127604326 -90432832 - MER61E LTR ERV1 -4 565 1 1198 63 82 0 chr3 127604410 127604569 -90432589 - AluY SINE Alu -11 300 129 192 40 0 0 chr3 127604569 127604594 -90432564 + (TG)n Simple_repeat Simple_repeat 2 26 0 927 89 0 8 chr3 127604694 127604818 -90432340 - AluSq/x SINE Alu -189 123 1 233 261 0 15 chr3 127604872 127604937 -90432221 + (CA)n Simple_repeat Simple_repeat 2 65 0 227 180 0 66 chr3 127605314 127605375 -90431783 + A-rich Low_complexity Low_complexity 2 58 0 1358 188 50 11 chr3 127607742 127608024 -90429134 - L1MB2 LINE L1 -4 6167 5875 224 244 0 0 chr3 127608110 127608151 -90429007 - L2 LINE L2 -91 3222 3182 22 0 0 0 chr3 127608803 127608825 -90428333 + AT_rich Low_complexity Low_complexity 1 22 0 325 341 0 0 chr3 127608835 127608926 -90428232 - MIR3 SINE MIR -31 177 87 218 296 0 14 chr3 127609347 127609418 -90427740 - L2 LINE L2 0 3313 3244 336 183 0 0 chr3 127609520 127609591 -90427567 - MLT1B LTR MaLR -221 169 99 1161 133 0 0 chr3 127609591 127609749 -90427409 - AluSg/x SINE Alu -18 294 137 690 13 0 0 chr3 127609749 127609828 -90427330 + (TTTTA)n Simple_repeat Simple_repeat 4 82 0 1564 110 130 28 chr3 127609828 127610082 -90427076 - AluSx SINE Alu -30 282 3 412 194 122 0 chr3 127610086 127610184 -90426974 - MLT1B LTR MaLR -280 110 1 1996 168 16 39 chr3 127610186 127610628 -90426530 - L1M4 LINE L1 -504 5670 5236 254 327 15 22 chr3 127610680 127610912 -90426246 + L1M4 LINE L1 4007 4239 -1907 2187 108 7 3 chr3 127611418 127611723 -90425435 - AluSg1 SINE Alu -3 306 1 472 354 0 6 chr3 127611826 127611987 -90425171 - MER5B DNA MER1_type -16 162 3 285 75 0 0 chr3 127612706 127612746 -90424412 + (CA)n Simple_repeat Simple_repeat 2 41 0 246 309 221 0 chr3 127614128 127614264 -90422894 + MIR SINE MIR 56 221 -41 1856 119 149 6 chr3 127614272 127614600 -90422558 - THE1C LTR MaLR 0 375 1 218 275 22 11 chr3 127615826 127615917 -90421241 + (CATATA)n Simple_repeat Simple_repeat 3 94 0 1345 168 62 4 chr3 127615917 127616161 -90420997 - Tigger3(Golem) DNA MER2_type -1 3028 2771 676 211 21 28 chr3 127616158 127616300 -90420858 - Tigger3(Golem) DNA MER2_type -2887 142 2 * 185 362 57 14 chr3 127616340 127616481 -90420677 + L2 LINE L2 2564 2710 -604 182 274 32 42 chr3 127616533 127616628 -90420530 + L2 LINE L2 3084 3177 -136 893 125 7 7 chr3 127616634 127616770 -90420388 - AluJo SINE Alu -176 136 1 383 261 59 0 chr3 127616787 127616906 -90420252 + L2 LINE L2 3176 3301 -12 241 246 0 18 chr3 127616936 127616993 -90420165 + L2 LINE L2 3217 3272 0 449 202 22 0 chr3 127617817 127617906 -90419252 - L2 LINE L2 0 3313 3223 313 266 0 21 chr3 127617918 127618012 -90419146 + (TA)n Simple_repeat Simple_repeat 2 93 0 324 0 0 0 chr3 127618024 127618060 -90419098 + (TG)n Simple_repeat Simple_repeat 2 37 0 192 254 7 160 chr3 127618091 127618366 -90418792 - L2 LINE L2 -114 3199 2967 38 0 0 0 chr3 127618595 127618633 -90418525 + AT_rich Low_complexity Low_complexity 1 38 0 438 347 53 37 chr3 127619520 127619820 -90417338 + L2 LINE L2 2552 2856 -458 316 291 276 31 chr3 127619854 127620115 -90417043 + L2 LINE L2 2948 3272 0 246 128 0 0 chr3 127621360 127621399 -90415759 + (CA)n Simple_repeat Simple_repeat 2 40 0 1735 199 133 28 chr3 127622305 127622561 -90414597 + MLT1D LTR MaLR 1 229 -276 3903 159 116 4 chr3 127622561 127623304 -90413854 - LTR1B LTR ERV1 0 826 1 1735 199 133 28 chr3 127623304 127623504 -90413654 + MLT1D LTR MaLR 229 505 0 10783 37 0 3 chr3 127623793 127625864 -90411294 + L1PA4 LINE L1 4078 6153 -2 352 310 40 70 chr3 127626138 127626338 -90410820 - L2 LINE L2 -663 2651 2458 370 206 0 0 chr3 127628102 127628170 -90408988 - MER5A DNA MER1_type -83 106 39 24 0 0 0 chr3 127628663 127628687 -90408471 + AT_rich Low_complexity Low_complexity 1 24 0 2038 163 82 5 chr3 127629395 127629763 -90407395 - MSTD LTR MaLR 0 396 1 22 0 0 0 chr3 127629881 127629903 -90407255 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 127630064 127630086 -90407072 + AT_rich Low_complexity Low_complexity 1 22 0 216 384 0 0 chr3 127630228 127630301 -90406857 + MIR SINE MIR 119 191 -71 205 195 0 0 chr3 127630727 127630768 -90406390 + A-rich Low_complexity Low_complexity 5 45 0 292 266 13 13 chr3 127632220 127632299 -90404859 + L2 LINE L2 3230 3308 -5 258 348 7 57 chr3 127632332 127632473 -90404685 - MIR3 SINE MIR -62 146 13 200 287 11 58 chr3 127632797 127632884 -90404274 + MIR3 SINE MIR 118 200 -8 22 0 0 0 chr3 127633092 127633114 -90404044 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 127633164 127633187 -90403971 + AT_rich Low_complexity Low_complexity 1 23 0 809 301 26 15 chr3 127633465 127633737 -90403421 - Charlie8 DNA MER1_type -2141 276 2 196 204 142 115 chr3 127634612 127634725 -90402433 - MIR SINE MIR -77 131 16 21 36 0 0 chr3 127634725 127634753 -90402405 + AT_rich Low_complexity Low_complexity 1 28 0 475 311 6 6 chr3 127636711 127636878 -90400280 + L3b LINE CR1 1102 1268 -315 2108 141 0 0 chr3 127637925 127638237 -90398921 + AluSq SINE Alu 1 312 -1 531 272 144 0 chr3 127638683 127638843 -90398315 - MER5A DNA MER1_type 0 189 4 925 176 24 0 chr3 127638934 127639104 -90398054 - L1MC1 LINE L1 -30 6303 6130 306 196 59 29 chr3 127639227 127639329 -90397829 + L1MC4 LINE L1 7688 7792 -250 44 0 0 0 chr3 127639341 127639385 -90397773 + AT_rich Low_complexity Low_complexity 1 44 0 317 248 32 31 chr3 127639385 127639515 -90397643 + L1MC4 LINE L1 7900 7995 0 21 0 0 0 chr3 127639921 127639942 -90397216 + AT_rich Low_complexity Low_complexity 1 21 0 694 290 97 66 chr3 127641511 127642016 -90395142 - L2 LINE L2 -8 3305 2779 640 279 17 28 chr3 127642565 127642744 -90394414 + MIR SINE MIR 65 241 -21 285 200 15 0 chr3 127645503 127645568 -90391590 + FLAM_A SINE Alu 67 132 -1 261 0 0 0 chr3 127645809 127645838 -90391320 + (A)n Simple_repeat Simple_repeat 1 29 0 405 298 135 88 chr3 127647867 127648297 -90388861 + MLT1K LTR MaLR 139 588 0 180 0 0 0 chr3 127649194 127649214 -90387944 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5053 143 13 13 chr3 127650298 127651152 -90386006 + L1PA16 LINE L1 5304 6157 -9 22 35 0 0 chr3 127651152 127651181 -90385977 + AT_rich Low_complexity Low_complexity 1 29 0 1249 177 35 0 chr3 127651255 127651481 -90385677 + MER46A DNA MER2_type 3 236 0 191 252 99 92 chr3 127651649 127651780 -90385378 + MIR SINE MIR 20 151 -57 * 448 352 35 39 chr3 127651765 127652021 -90385137 - MIR SINE MIR 0 262 8 200 329 29 14 chr3 127652548 127652618 -90384540 - MER5A DNA MER1_type -24 165 95 577 274 18 12 chr3 127654693 127654861 -90382297 - L2 LINE L2 0 3313 3145 1258 228 80 74 chr3 127654865 127655138 -90382020 - MER34C LTR ERV1 0 585 315 1246 143 39 4 chr3 127655138 127655369 -90381789 + L1PA16 LINE L1 5925 6163 -3 1258 228 80 74 chr3 127655369 127655661 -90381497 - MER34C LTR ERV1 -270 315 17 432 247 43 19 chr3 127655726 127655888 -90381270 - MER104 DNA Tc2 -2 178 13 1052 278 90 48 chr3 127655907 127656407 -90380751 - L2 LINE L2 -253 3060 2539 469 281 31 19 chr3 127656960 127657120 -90380038 + MIR SINE MIR 30 191 -71 206 216 20 0 chr3 127657166 127657217 -90379941 + L2 LINE L2 2853 2904 -410 189 107 0 0 chr3 127658925 127658953 -90378205 + (CA)n Simple_repeat Simple_repeat 2 29 0 244 197 14 14 chr3 127658979 127659050 -90378108 + CT-rich Low_complexity Low_complexity 1 71 0 841 258 5 41 chr3 127660362 127660583 -90376575 + MIR SINE MIR 1 213 -49 192 313 0 0 chr3 127661167 127661215 -90375943 + L2 LINE L2 2985 3032 -240 23 33 0 0 chr3 127661481 127661511 -90375647 + AT_rich Low_complexity Low_complexity 1 30 0 252 272 232 31 chr3 127661862 127661929 -90375229 + MIR SINE MIR 37 89 -173 1537 101 64 5 chr3 127661929 127662148 -90375010 + 7SLRNA srpRNA srpRNA 1 232 -88 252 272 232 31 chr3 127662148 127662271 -90374887 + MIR SINE MIR 89 261 -1 24383 71 4 11 chr3 127664615 127667773 -90369385 - HERVL-A1 LTR ERVL -588 5066 1932 12056 70 2 2 chr3 127667910 127669446 -90367712 - HERVL-A1 LTR ERVL -4118 1536 1 310 123 0 53 chr3 127669446 127669503 -90367655 - MLT2A1 LTR ERVL 0 444 391 336 240 0 0 chr3 127669504 127669625 -90367533 + (TA)n Simple_repeat Simple_repeat 2 122 0 2658 114 23 5 chr3 127669640 127670036 -90367122 - MLT2A1 LTR ERVL -41 403 1 198 0 0 0 chr3 127671198 127671220 -90365938 + (CATTT)n Simple_repeat Simple_repeat 3 24 0 2358 223 39 15 chr3 127671438 127672030 -90365128 + L1MB8 LINE L1 5541 6146 -32 573 266 144 0 chr3 127676283 127676456 -90360702 - MIR SINE MIR -24 238 41 678 198 55 22 chr3 127677716 127677898 -90359260 + MER53 DNA DNA 2 189 0 651 304 45 12 chr3 127677907 127678150 -90359008 + MIR SINE MIR 6 256 -6 225 0 0 0 chr3 127678564 127678589 -90358569 + (CA)n Simple_repeat Simple_repeat 2 26 0 * 306 0 0 0 chr3 127678588 127678622 -90358536 + (GA)n Simple_repeat Simple_repeat 2 35 0 255 260 60 40 chr3 127680062 127680212 -90356946 - MIR SINE MIR -4 258 106 630 235 186 18 chr3 127680432 127680653 -90356505 + MIR SINE MIR 2 259 -3 270 167 56 28 chr3 127681476 127681548 -90355610 - L1ME4a LINE L1 -95 6026 5953 23 0 0 0 chr3 127681584 127681607 -90355551 + AT_rich Low_complexity Low_complexity 1 23 0 2471 63 10 0 chr3 127681649 127681951 -90355207 - AluY SINE Alu 0 311 7 222 315 189 0 chr3 127682458 127682585 -90354573 + MIR SINE MIR 3 153 -109 1986 119 39 0 chr3 127682989 127683274 -90353884 - AluSx SINE Alu -11 301 6 25 31 0 0 chr3 127683794 127683826 -90353332 + AT_rich Low_complexity Low_complexity 1 32 0 222 297 195 16 chr3 127684494 127684622 -90352536 + L2 LINE L2 3162 3312 -1 21 0 0 0 chr3 127685149 127685170 -90351988 + AT_rich Low_complexity Low_complexity 1 21 0 255 125 0 0 chr3 127685469 127685509 -90351649 + (TG)n Simple_repeat Simple_repeat 1 40 0 1564 165 77 15 chr3 127685654 127685993 -90351165 - MER46B DNA MER2_type -1 235 1 1267 200 113 36 chr3 127686025 127686360 -90350798 - MLT1A1 LTR MaLR 0 365 5 491 122 11 0 chr3 127686607 127686697 -90350461 + (TC)n Simple_repeat Simple_repeat 2 92 0 540 217 217 50 chr3 127686791 127686989 -90350169 - MIR SINE MIR -1 261 31 250 363 83 36 chr3 127687616 127687809 -90349349 + MIR SINE MIR 37 238 -24 2189 108 7 10 chr3 127688492 127688789 -90348369 - AluSq SINE Alu -16 297 2 435 316 42 6 chr3 127688945 127689113 -90348045 - MIR SINE MIR -10 252 79 231 61 0 0 chr3 127689121 127689154 -90348004 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 235 292 22 0 chr3 127690144 127690233 -90346925 + L1MC4a LINE L1 5504 5594 -527 447 310 96 31 chr3 127690369 127690480 -90346678 + L1MC4a LINE L1 5646 5748 -2060 4213 114 3 0 chr3 127690480 127691094 -90346064 + L1PA15 LINE L1 5546 6161 -4 447 310 96 31 chr3 127691094 127691243 -90345915 + L1MC4a LINE L1 5748 5923 -1885 22 70 0 0 chr3 127692030 127692073 -90345085 + AT_rich Low_complexity Low_complexity 1 43 0 2754 252 59 10 chr3 127692227 127693573 -90343585 - L1ME1 LINE L1 -5 6441 5027 804 152 22 0 chr3 127693577 127693715 -90343443 - L1MA9 LINE L1 -5 6307 6167 201 74 0 0 chr3 127693718 127693745 -90343413 + (TG)n Simple_repeat Simple_repeat 2 28 0 354 244 11 0 chr3 127693765 127693855 -90343303 - L1MA10 LINE L1 -6 6328 6238 2549 202 37 67 chr3 127693870 127694393 -90342765 - L1MA4A LINE L1 -143 6160 5742 2067 92 44 0 chr3 127694393 127694703 -90342455 - AluSq SINE Alu 0 322 1 2549 202 37 67 chr3 127694703 127695321 -90341837 - L1MA4A LINE L1 -561 5742 5107 808 21 0 0 chr3 127695379 127695475 -90341683 - L1PA3 LINE L1 0 6155 6060 1507 235 54 47 chr3 127695490 127695808 -90341350 - L1ME1 LINE L1 -1385 5041 4716 2112 137 3 0 chr3 127695808 127696107 -90341051 - AluSx SINE Alu -12 300 1 1507 235 54 47 chr3 127696107 127696380 -90340778 - L1ME1 LINE L1 -1710 4716 4446 498 237 0 0 chr3 127696463 127696556 -90340602 - AluJb SINE Alu -25 287 195 749 212 83 9 chr3 127696556 127696773 -90340385 - L1ME1 LINE L1 -2185 4241 4009 * 15461 222 28 21 chr3 127696770 127697074 -90340084 - L1PA15 LINE L1 -8 6808 6508 234 0 0 0 chr3 127697074 127697100 -90340058 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1959 125 10 7 chr3 127697100 127697397 -90339761 - AluSp SINE Alu -15 298 1 15461 222 28 21 chr3 127697397 127703643 -90333515 - L1PA15 LINE L1 -307 6509 1 1435 257 49 74 chr3 127703658 127704502 -90332656 - L1ME1 LINE L1 -2421 4005 3192 1900 177 30 6 chr3 127704502 127704841 -90332317 - MER7A DNA MER2_type -1 345 1 1435 257 49 74 chr3 127704841 127705082 -90332076 - L1ME1 LINE L1 -3234 3192 2947 2267 123 0 0 chr3 127705099 127705407 -90331751 - AluSc SINE Alu -1 308 1 298 288 65 43 chr3 127705857 127705996 -90331162 + L2 LINE L2 3142 3283 -30 2008 136 0 0 chr3 127706000 127706287 -90330871 + AluSp SINE Alu 1 287 -26 759 274 90 0 chr3 127706797 127707031 -90330127 + LTR16C LTR ERVL 237 491 0 404 324 27 7 chr3 127708516 127708664 -90328494 - MIR SINE MIR -2 260 110 26 74 0 0 chr3 127709530 127709584 -90327574 + AT_rich Low_complexity Low_complexity 1 54 0 1590 317 110 14 chr3 127710326 127711262 -90325896 - L2 LINE L2 -166 3147 2131 21 36 0 0 chr3 127712171 127712199 -90324959 + AT_rich Low_complexity Low_complexity 1 28 0 202 168 42 21 chr3 127713421 127713516 -90323642 + (TCTA)n Simple_repeat Simple_repeat 3 99 0 251 132 57 0 chr3 127713618 127713671 -90323487 + MER4B-int LTR ERV1 1141 1196 -5562 315 293 0 0 chr3 127713682 127713764 -90323394 - L1MC4 LINE L1 -1347 6695 6614 205 243 0 0 chr3 127713764 127713801 -90323357 + (CA)n Simple_repeat Simple_repeat 2 38 0 303 241 13 0 chr3 127713801 127713880 -90323278 - L1ME1 LINE L1 -4362 2064 1985 351 179 0 0 chr3 127714287 127714354 -90322804 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 21 0 0 0 chr3 127715845 127715866 -90321292 + AT_rich Low_complexity Low_complexity 1 21 0 779 257 55 0 chr3 127716012 127716214 -90320944 + MER58A DNA MER1_type 12 224 0 411 21 0 0 chr3 127716532 127716580 -90320578 + (TG)n Simple_repeat Simple_repeat 2 49 0 210 328 198 17 chr3 127717965 127718081 -90319077 - L2 LINE L2 0 3272 3136 205 175 50 0 chr3 127718590 127718630 -90318528 + (TATG)n Simple_repeat Simple_repeat 3 44 0 22 35 0 0 chr3 127718646 127718675 -90318483 + AT_rich Low_complexity Low_complexity 1 29 0 1179 164 9 9 chr3 127719084 127719297 -90317861 - AluJo SINE Alu -23 289 77 1910 200 75 10 chr3 127719495 127719895 -90317263 - MSTB LTR MaLR 0 426 1 25 31 0 0 chr3 127720093 127720125 -90317033 + AT_rich Low_complexity Low_complexity 1 32 0 2263 73 0 45 chr3 127721399 127721713 -90315445 - AluY SINE Alu -9 302 3 2176 125 51 0 chr3 127721716 127722067 -90315091 - L1PA8 LINE L1 -952 5194 4826 5960 77 11 81 chr3 127722067 127722379 -90314779 + L1PA8 LINE L1 5215 5547 -625 10483 68 18 9 chr3 127722379 127723744 -90313414 - SVA Other Other -1 1385 8 5960 77 11 81 chr3 127723744 127724451 -90312707 + L1PA8 LINE L1 5547 6166 -6 21 0 0 0 chr3 127724562 127724583 -90312575 + AT_rich Low_complexity Low_complexity 1 21 0 191 323 21 10 chr3 127725346 127725442 -90311716 + MIR SINE MIR 150 246 -16 229 349 48 62 chr3 127726104 127726313 -90310845 + MIR SINE MIR 23 228 -34 21 0 0 0 chr3 127727490 127727511 -90309647 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr3 127729411 127729437 -90307721 + AT_rich Low_complexity Low_complexity 1 26 0 2108 89 11 4 chr3 127729437 127729717 -90307441 - AluSp SINE Alu -26 287 6 309 317 89 0 chr3 127730403 127730526 -90306632 - MIR SINE MIR -50 212 79 2108 184 58 33 chr3 127731041 127731492 -90305666 - MLT1C LTR MaLR -5 462 1 268 246 45 27 chr3 127733636 127733746 -90303412 + MIR SINE MIR 96 207 -55 30 21 0 21 chr3 127733975 127733989 -90303169 + AT_rich Low_complexity Low_complexity 1 14 -33 17916 37 6 1 chr3 127733989 127736939 -90300219 + L1PA3 LINE L1 3202 6155 0 30 21 0 21 chr3 127736939 127736972 -90300186 + AT_rich Low_complexity Low_complexity 14 47 0 185 91 0 30 chr3 127737193 127737226 -90299932 + (TC)n Simple_repeat Simple_repeat 2 33 0 369 177 0 0 chr3 127737374 127737453 -90299705 + (TAAA)n Simple_repeat Simple_repeat 4 82 0 44 0 0 0 chr3 127738475 127738519 -90298639 + AT_rich Low_complexity Low_complexity 1 44 0 185 91 0 30 chr3 127738751 127738784 -90298374 + (TC)n Simple_repeat Simple_repeat 2 33 0 405 169 0 0 chr3 127738932 127739015 -90298143 + (TAAA)n Simple_repeat Simple_repeat 4 86 0 278 318 114 0 chr3 127740597 127740685 -90296473 + L2 LINE L2 3201 3298 -15 385 226 21 0 chr3 127740686 127740779 -90296379 - L1ME3 LINE L1 -1 6161 6067 366 189 22 11 chr3 127740793 127740883 -90296275 - L1M4 LINE L1 -877 5269 5179 6132 186 13 30 chr3 127740980 127741651 -90295507 - L1PA14 LINE L1 0 7599 6918 2298 101 3 10 chr3 127741651 127741959 -90295199 - AluSg SINE Alu -4 306 1 6132 186 13 30 chr3 127741959 127743402 -90293756 - L1PA14 LINE L1 -681 6918 5507 6828 202 17 28 chr3 127743402 127744707 -90292451 - L1PA14 LINE L1 -2977 4607 3343 1991 155 0 0 chr3 127744707 127745003 -90292155 - AluSx SINE Alu -12 300 5 6828 202 17 28 chr3 127745003 127746113 -90291045 - L1PA14 LINE L1 -4241 3343 2223 479 122 11 0 chr3 127746310 127746400 -90290758 + (GA)n Simple_repeat Simple_repeat 2 92 0 1267 200 113 36 chr3 127746647 127746982 -90290176 + MLT1A1 LTR MaLR 5 365 0 1543 168 77 15 chr3 127747014 127747353 -90289805 + MER46B DNA MER2_type 1 235 -1 186 133 0 0 chr3 127747498 127747528 -90289630 + (CA)n Simple_repeat Simple_repeat 1 30 0 2439 66 13 0 chr3 127747589 127747893 -90289265 + AluY SINE Alu 2 309 -2 23 0 0 0 chr3 127747934 127747957 -90289201 + AT_rich Low_complexity Low_complexity 1 23 0 262 167 56 28 chr3 127747993 127748065 -90289093 + L1ME4a LINE L1 5953 6026 -95 633 235 186 18 chr3 127748888 127749109 -90288049 - MIR SINE MIR -3 259 2 255 260 60 40 chr3 127749329 127749479 -90287679 + MIR SINE MIR 106 258 -4 306 0 0 0 chr3 127750896 127750930 -90286228 + (TC)n Simple_repeat Simple_repeat 2 35 0 223 297 195 16 chr3 127751429 127751557 -90285601 + L2 LINE L2 3162 3312 -1 21 0 0 0 chr3 127752084 127752105 -90285053 + AT_rich Low_complexity Low_complexity 1 21 0 2429 82 0 0 chr3 127752358 127752662 -90284496 - AluY SINE Alu 0 311 8 216 315 189 0 chr3 127753171 127753298 -90283860 + MIR SINE MIR 3 153 -109 2003 128 38 0 chr3 127753702 127753992 -90283166 - AluSx SINE Alu -11 301 1 25 31 0 0 chr3 127754507 127754539 -90282619 + AT_rich Low_complexity Low_complexity 1 32 0 9037 64 3 4 chr3 127755312 127756520 -90280638 + HERVL-A1 LTR ERVL 4448 5654 0 2642 103 74 10 chr3 127756520 127756937 -90280221 + MLT2A1 LTR ERVL 1 444 0 23 0 0 0 chr3 127757543 127757566 -90279592 + AT_rich Low_complexity Low_complexity 1 23 0 6268 54 16 5 chr3 127758016 127759080 -90278078 + L1P1 LINE L1 4566 5646 -509 380 306 0 0 chr3 127759602 127759796 -90277362 + G-rich Low_complexity Low_complexity 1 194 0 222 308 191 50 chr3 127760216 127760557 -90276601 + L2 LINE L2 2553 2941 -373 1693 116 109 4 chr3 127761129 127761404 -90275754 - AluSq SINE Alu -6 307 4 8262 146 20 14 chr3 127762025 127763413 -90273745 - L1PA12 LINE L1 -5074 2507 1111 798 108 8 23 chr3 127763425 127763555 -90273603 - L1PA12 LINE L1 -7451 130 3 789 223 33 30 chr3 127763553 127763858 -90273300 - L1ME2 LINE L1 -193 6766 6461 * 4818 267 89 14 chr3 127763858 127765363 -90271795 - L1ME2 LINE L1 -750 6191 4416 315 0 0 0 chr3 127765363 127765398 -90271760 + (TG)n Simple_repeat Simple_repeat 2 36 0 4818 267 89 14 chr3 127765398 127766430 -90270728 - L1ME2 LINE L1 -2525 4416 3463 759 269 37 0 chr3 127766473 127766715 -90270443 - L1ME2 LINE L1 -3603 3338 3088 12172 204 13 22 chr3 127766847 127769796 -90267362 - L1PA13 LINE L1 -8 7593 4670 2198 99 0 7 chr3 127769796 127770090 -90267068 - AluSq SINE Alu -2 311 20 12172 204 13 22 chr3 127770090 127770863 -90266295 - L1PA13 LINE L1 -2931 4670 3892 225 108 0 0 chr3 127770864 127770901 -90266257 + (TA)n Simple_repeat Simple_repeat 1 37 0 369 154 51 0 chr3 127770904 127770982 -90266176 - L1PA13 LINE L1 -4679 2902 2821 180 77 0 0 chr3 127770982 127771008 -90266150 + (TA)n Simple_repeat Simple_repeat 1 26 0 239 102 0 20 chr3 127771052 127771101 -90266057 + (CTA)n Simple_repeat Simple_repeat 2 49 0 272 294 0 33 chr3 127771118 127771210 -90265948 + C-rich Low_complexity Low_complexity 2 90 0 248 141 42 14 chr3 127771212 127771283 -90265875 + CT-rich Low_complexity Low_complexity 1 73 0 225 159 0 0 chr3 127771346 127771390 -90265768 + C-rich Low_complexity Low_complexity 2 45 0 369 308 3 34 chr3 127771514 127771760 -90265398 + C-rich Low_complexity Low_complexity 1 238 0 879 138 4 0 chr3 127771883 127772137 -90265021 + (TA)n Simple_repeat Simple_repeat 1 255 0 7109 224 49 77 chr3 127772137 127775649 -90261509 - L1PA12 LINE L1 -3700 3884 2 488 273 40 59 chr3 127775655 127775688 -90261470 - L1ME2 LINE L1 -3996 3126 3094 1569 169 30 63 chr3 127775688 127775990 -90261168 - AluJo SINE Alu -20 292 1 488 273 40 59 chr3 127775990 127776298 -90260860 - L1ME2 LINE L1 -4028 3094 2792 611 188 91 41 chr3 127776298 127776495 -90260663 + MER3 DNA MER1_type 2 208 -1 488 273 40 59 chr3 127776495 127776573 -90260585 - L1ME2 LINE L1 -4330 2792 2714 2179 175 8 44 chr3 127776617 127777092 -90260066 - L1MC1 LINE L1 -2 6331 5874 603 258 33 0 chr3 127777096 127777216 -90259942 - FLAM_C SINE Alu -19 124 1 322 287 7 0 chr3 127777271 127777407 -90259751 - L1MEc LINE L1 -4074 2322 2186 4163 218 16 14 chr3 127777420 127779276 -90257882 - L1MC1 LINE L1 -467 5866 4007 343 268 93 76 chr3 127779285 127779633 -90257525 - L1ME2 LINE L1 -4436 2686 2329 237 108 0 0 chr3 127779633 127779670 -90257488 + (TAGA)n Simple_repeat Simple_repeat 3 39 0 343 268 93 76 chr3 127779670 127779728 -90257430 - L1ME2 LINE L1 -4793 2329 2273 1218 151 32 0 chr3 127779782 127780000 -90257158 - L1PA16 LINE L1 -9 6157 5933 1998 126 6 6 chr3 127780001 127780326 -90256832 - L1PA16 LINE L1 -391 5775 5451 319 242 124 69 chr3 127780390 127780469 -90256689 - L1ME2 LINE L1 -4823 2118 2045 2018 127 35 59 chr3 127780469 127780509 -90256649 - THE1B LTR MaLR 0 364 325 2113 120 7 3 chr3 127780509 127780793 -90256365 + AluSq SINE Alu 1 285 -28 2018 127 35 59 chr3 127780793 127781123 -90256035 - THE1B LTR MaLR -39 325 3 10675 126 13 1 chr3 127781125 127782687 -90254471 - THE1B-int LTR MaLR 0 1580 1 2195 124 36 36 chr3 127782687 127783051 -90254107 - THE1B LTR MaLR 0 364 1 319 242 124 69 chr3 127783051 127783653 -90253505 - L1ME2 LINE L1 -4895 2046 1252 463 343 39 23 chr3 127784100 127784488 -90252670 - L1ME2 LINE L1 -6013 410 17 534 259 54 44 chr3 127784555 127784760 -90252398 + MIR SINE MIR 53 259 -3 180 0 0 0 chr3 127785546 127785566 -90251592 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 185 146 21 0 chr3 127785813 127785861 -90251297 + CT-rich Low_complexity Low_complexity 1 49 0 192 77 0 0 chr3 127785879 127785905 -90251253 + (GA)n Simple_repeat Simple_repeat 2 27 0 268 356 87 9 chr3 127788224 127788339 -90248819 + MIR3 SINE MIR 6 129 -79 215 250 77 0 chr3 127788717 127788769 -90248389 + MIR SINE MIR 59 114 -148 356 0 23 0 chr3 127790331 127790375 -90246783 + (TG)n Simple_repeat Simple_repeat 1 45 0 1582 149 76 50 chr3 127790424 127790726 -90246432 - AluJo SINE Alu -2 310 1 22 0 0 0 chr3 127790755 127790777 -90246381 + AT_rich Low_complexity Low_complexity 1 22 0 356 0 0 22 chr3 127790888 127790933 -90246225 + (TG)n Simple_repeat Simple_repeat 2 45 0 25 31 0 0 chr3 127791466 127791498 -90245660 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr3 127792510 127792553 -90244605 + AT_rich Low_complexity Low_complexity 1 43 0 2279 112 3 0 chr3 127793525 127793821 -90243337 - AluSp SINE Alu -16 297 1 1767 164 44 90 chr3 127794100 127794557 -90242601 + L1PA16 LINE L1 5711 6146 -20 26 74 0 0 chr3 127794557 127794611 -90242547 + AT_rich Low_complexity Low_complexity 1 54 0 267 246 0 0 chr3 127794782 127794839 -90242319 + (CA)n Simple_repeat Simple_repeat 2 58 0 422 351 40 6 chr3 127794869 127795043 -90242115 + MIR3 SINE MIR 1 180 -28 351 0 0 0 chr3 127795773 127795812 -90241346 + (TG)n Simple_repeat Simple_repeat 2 40 0 324 0 0 0 chr3 127796650 127796686 -90240472 + (CA)n Simple_repeat Simple_repeat 2 37 0 23 68 0 0 chr3 127796776 127796820 -90240338 + AT_rich Low_complexity Low_complexity 1 44 0 235 315 96 0 chr3 127798052 127798125 -90239033 + L2 LINE L2 3004 3083 -189 24 85 0 0 chr3 127799254 127799313 -90237845 + AT_rich Low_complexity Low_complexity 1 59 0 24854 36 11 1 chr3 127799647 127805745 -90231413 - L1PA4 LINE L1 0 6155 3 312 366 143 6 chr3 127806343 127806518 -90230640 + MIR3 SINE MIR 3 201 -7 326 345 107 52 chr3 127807242 127807645 -90229513 + L2 LINE L2 2455 2879 -435 383 277 84 0 chr3 127808453 127808572 -90228586 + L2 LINE L2 3143 3271 -1 538 327 97 43 chr3 127809292 127809940 -90227218 + L2 LINE L2 2553 3247 -66 2509 7 0 0 chr3 127812662 127813000 -90224158 + L1PA2 LINE L1 5861 6198 0 231 36 0 0 chr3 127813106 127813134 -90224024 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2292 55 12 64 chr3 127813813 127814141 -90223017 + AluY SINE Alu 1 311 0 254 320 7 41 chr3 127814976 127815123 -90222035 + CT-rich Low_complexity Low_complexity 5 146 0 207 277 11 32 chr3 127815322 127815416 -90221742 + GA-rich Low_complexity Low_complexity 4 95 0 228 35 0 0 chr3 127815425 127815454 -90221704 + (CTG)n Simple_repeat Simple_repeat 1 29 0 381 22 0 0 chr3 127816102 127816148 -90221010 + (TG)n Simple_repeat Simple_repeat 2 47 0 239 0 32 0 chr3 127816190 127816221 -90220937 + (TG)n Simple_repeat Simple_repeat 2 33 0 183 42 0 0 chr3 127816519 127816543 -90220615 + (TG)n Simple_repeat Simple_repeat 2 25 0 276 30 0 0 chr3 127816554 127816587 -90220571 + (CA)n Simple_repeat Simple_repeat 2 34 0 204 135 58 19 chr3 127817430 127817482 -90219676 + (TG)n Simple_repeat Simple_repeat 2 55 0 284 307 79 20 chr3 127820803 127820904 -90216254 + MIR SINE MIR 37 143 -65 2384 86 0 0 chr3 127820915 127821217 -90215941 + AluSc SINE Alu 1 302 -7 694 200 80 7 chr3 127821401 127821551 -90215607 - MER5A DNA MER1_type 0 189 29 201 324 45 68 chr3 127821730 127821906 -90215252 + MER5B DNA MER1_type 7 178 0 243 329 97 13 chr3 127822978 127823133 -90214025 - MIR3 SINE MIR -11 197 30 436 232 0 14 chr3 127823224 127823362 -90213796 + CT-rich Low_complexity Low_complexity 1 136 0 4935 130 37 64 chr3 127823527 127824862 -90212296 - L1PB1 LINE L1 -2 6149 4854 2000 105 11 0 chr3 127826088 127826364 -90210794 + AluSc SINE Alu 1 279 -30 212 333 10 42 chr3 127826395 127826491 -90210667 + L2 LINE L2 2986 3078 -194 28 79 0 0 chr3 127828353 127828416 -90208742 + AT_rich Low_complexity Low_complexity 1 63 0 29 47 0 0 chr3 127828582 127828625 -90208533 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr3 127829043 127829068 -90208090 + AT_rich Low_complexity Low_complexity 1 25 0 283 333 253 22 chr3 127829490 127829890 -90207268 + L3 LINE CR1 256 747 -830 214 186 23 0 chr3 127829987 127830030 -90207128 + GA-rich Low_complexity Low_complexity 4 47 0 327 326 62 14 chr3 127830111 127830255 -90206903 + MIR SINE MIR 6 156 -106 25 31 0 0 chr3 127830450 127830482 -90206676 + AT_rich Low_complexity Low_complexity 1 32 0 1790 97 0 0 chr3 127832495 127832722 -90204436 - AluSc SINE Alu -45 264 38 250 296 127 73 chr3 127832906 127833126 -90204032 - L2 LINE L2 -916 2398 2167 419 229 65 65 chr3 127833193 127833363 -90203795 + MER69A DNA AcHobo 1 170 -7 2860 13 3 0 chr3 127833517 127833834 -90203324 + AluYb8 SINE Alu 1 318 0 210 71 0 0 chr3 127833864 127833892 -90203266 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 1962 104 96 0 chr3 127834450 127834730 -90202428 - AluSq SINE Alu -6 307 1 27 0 0 0 chr3 127835171 127835198 -90201960 + AT_rich Low_complexity Low_complexity 1 27 0 256 341 35 0 chr3 127835380 127835465 -90201693 - MIR SINE MIR -56 152 65 677 302 60 40 chr3 127837833 127838134 -90199024 - L2 LINE L2 -1 3312 3006 3134 237 44 22 chr3 127838168 127838392 -90198766 - L1MB7 LINE L1 -9 6175 5957 1185 184 129 16 chr3 127838392 127838701 -90198457 + MER2 DNA MER2_type 1 344 0 3134 237 44 22 chr3 127838701 127839367 -90197791 - L1MB7 LINE L1 -227 5957 5237 1943 118 93 0 chr3 127839367 127839647 -90197511 - AluSq SINE Alu -7 306 1 3134 237 44 22 chr3 127839647 127840035 -90197123 - L1MB7 LINE L1 -947 5237 4859 1952 119 0 36 chr3 127840047 127840350 -90196808 - AluSx SINE Alu -20 292 1 2183 137 0 3 chr3 127840535 127840848 -90196310 + AluSx SINE Alu 1 312 0 214 375 22 74 chr3 127841773 127842042 -90195116 - L2 LINE L2 -153 3119 2865 228 67 0 0 chr3 127842150 127842180 -90194978 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 216 322 53 35 chr3 127842548 127842719 -90194439 - L2 LINE L2 -910 2404 2231 226 331 79 16 chr3 127845631 127845717 -90191441 + MIR SINE MIR 56 154 -108 1249 230 67 49 chr3 127845717 127846122 -90191036 - MER92A LTR ERV1 0 412 1 226 331 79 16 chr3 127846122 127846162 -90190996 + MIR SINE MIR 154 190 -72 216 158 0 0 chr3 127846475 127846513 -90190645 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 213 294 0 0 chr3 127847502 127847553 -90189605 + L2 LINE L2 3244 3294 -19 471 194 319 7 chr3 127847804 127847948 -90189210 - MER5A DNA MER1_type 0 189 1 1191 207 97 7 chr3 127848831 127849131 -90188027 - MSTD LTR MaLR 0 396 70 6199 33 0 0 chr3 127849143 127849906 -90187252 - L1PA3 LINE L1 0 6155 5393 369 129 143 0 chr3 127849906 127849976 -90187182 - MSTD LTR MaLR -348 80 1 225 320 29 45 chr3 127851823 127852008 -90185150 - MIR SINE MIR -51 211 29 322 283 239 0 chr3 127852193 127852331 -90184827 + MIR SINE MIR 20 190 -72 249 312 94 22 chr3 127855105 127855243 -90181915 + MIR3 SINE MIR 50 197 -11 269 217 17 17 chr3 127856369 127856429 -90180729 + (TCCA)n Simple_repeat Simple_repeat 3 62 0 1343 142 7 89 chr3 127856903 127857185 -90179973 + AluJo SINE Alu 36 294 -18 368 320 6 70 chr3 127857835 127857991 -90179167 - MLT1K LTR MaLR -343 245 100 202 258 45 15 chr3 127858247 127858313 -90178845 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 2022 150 0 0 chr3 127859350 127859644 -90177514 + AluJb SINE Alu 1 294 -18 251 45 68 0 chr3 127860154 127860198 -90176960 + AluY SINE Alu 1 47 -253 1472 163 12 0 chr3 127860300 127860545 -90176613 + AluSq SINE Alu 60 307 -6 506 217 16 0 chr3 127860545 127860674 -90176484 + GA-rich Low_complexity Low_complexity 1 131 0 241 343 95 60 chr3 127861567 127862277 -90174881 + L2 LINE L2 2520 3254 -18 200 296 84 0 chr3 127862562 127862633 -90174525 - L2 LINE L2 0 3313 3237 1918 269 119 45 chr3 127863371 127864359 -90172799 - L2 LINE L2 -3 3310 2240 30 27 0 0 chr3 127865033 127865070 -90172088 + AT_rich Low_complexity Low_complexity 1 37 0 6932 198 129 30 chr3 127867337 127868928 -90168230 - MER52A LTR ERV1 0 1755 46 1139 120 5 60 chr3 127870252 127870436 -90166722 - AluSg/x SINE Alu -6 304 131 197 359 46 55 chr3 127870446 127870663 -90166495 + L2 LINE L2 2841 3055 -217 297 0 0 0 chr3 127870850 127870883 -90166275 + (TG)n Simple_repeat Simple_repeat 2 34 0 292 322 0 11 chr3 127870936 127871023 -90166135 - L3 LINE CR1 -24 1553 1468 32 26 0 0 chr3 127871156 127871195 -90165963 + AT_rich Low_complexity Low_complexity 1 39 0 224 213 33 0 chr3 127872092 127872153 -90165005 + T-rich Low_complexity Low_complexity 4 66 0 1735 65 0 48 chr3 127872973 127873204 -90163954 - AluY SINE Alu -90 221 2 295 94 57 0 chr3 127873494 127873547 -90163611 - L1MA4 LINE L1 -5 6295 6240 259 304 0 65 chr3 127874103 127874195 -90162963 + L2 LINE L2 2967 3052 -220 1543 223 0 0 chr3 127874244 127874526 -90162632 + AluJo SINE Alu 1 282 -30 494 261 158 5 chr3 127874881 127875065 -90162093 + MIR SINE MIR 48 259 -3 249 33 0 0 chr3 127875066 127875096 -90162062 + (TAG)n Simple_repeat Simple_repeat 3 32 0 259 370 31 8 chr3 127875680 127875807 -90161351 - MIR3 SINE MIR -3 205 76 450 241 37 91 chr3 127876488 127876675 -90160483 - MER5B DNA MER1_type 0 178 2 520 237 220 11 chr3 127878304 127878353 -90158805 - MER58C DNA MER1_type -2205 215 178 5247 36 16 2 chr3 127878353 127878996 -90158162 - L1PA5 LINE L1 -1 6153 5502 520 237 220 11 chr3 127878996 127879123 -90158035 - MER58C DNA MER1_type -2242 178 2 308 277 133 53 chr3 127879979 127880321 -90156837 + L1MC4a LINE L1 5723 5828 -303 361 330 48 44 chr3 127880553 127880780 -90156378 - MIR SINE MIR -29 233 6 21 0 0 0 chr3 127881097 127881118 -90156040 + AT_rich Low_complexity Low_complexity 1 21 0 380 331 55 18 chr3 127881226 127881389 -90155769 + L2 LINE L2 2689 2857 -457 414 0 0 0 chr3 127881766 127881812 -90155346 + (TG)n Simple_repeat Simple_repeat 2 47 0 316 295 37 16 chr3 127881831 127881976 -90155182 + MIR SINE MIR 20 169 -64 193 331 74 20 chr3 127882087 127882235 -90154923 + L2 LINE L2 3158 3313 0 4250 82 2 2 chr3 127883157 127883734 -90153424 + L1PA10 LINE L1 5592 6168 0 30 27 0 0 chr3 127885340 127885377 -90151781 + AT_rich Low_complexity Low_complexity 1 37 0 6591 205 90 27 chr3 127887196 127887568 -90149590 - L1MB3 LINE L1 -7 6412 6065 204 40 0 0 chr3 127887568 127887593 -90149565 + (TA)n Simple_repeat Simple_repeat 1 25 0 6591 205 90 27 chr3 127887593 127890059 -90147099 - L1MB3 LINE L1 -354 6065 3389 2041 215 7 12 chr3 127890059 127890482 -90146676 - L1MB3 LINE L1 -5946 438 18 1247 184 54 96 chr3 127890755 127891162 -90145996 - MLT1B LTR MaLR 0 390 1 266 347 48 32 chr3 127891520 127891644 -90145514 + L2 LINE L2 3116 3241 -31 2204 105 0 16 chr3 127892993 127893307 -90143851 + AluSq SINE Alu 1 309 -4 1245 163 18 0 chr3 127894540 127894767 -90142391 - L1P LINE L1 -759 5387 5157 43056 29 21 1 chr3 127894777 127900804 -90136354 - L1HS LINE L1 0 6155 4 1659 161 19 25 chr3 127900803 127901120 -90136038 - L1P LINE L1 -978 5168 4854 * 548 83 17 8 chr3 127901116 127901236 -90135922 + L1PA11 LINE L1 6071 6172 -2 * 21 0 0 0 chr3 127901581 127901602 -90135556 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr3 127901681 127901714 -90135444 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr3 127903283 127903306 -90133852 + AT_rich Low_complexity Low_complexity 1 23 0 2668 33 0 0 chr3 127903711 127904016 -90133142 + AluY SINE Alu 1 305 -6 6330 130 26 13 chr3 127904072 127905499 -90131659 - L1MA3 LINE L1 -10 6295 4858 363 96 0 0 chr3 127905915 127905967 -90131191 + (CA)n Simple_repeat Simple_repeat 2 53 0 392 247 13 0 chr3 127909789 127909866 -90127292 - Tigger7 DNA MER2_type -1 2490 2413 * 3522 145 47 19 chr3 127909862 127910455 -90126703 - Tigger7 DNA MER2_type -1872 615 6 652 241 36 118 chr3 127910922 127911254 -90125904 + L2 LINE L2 2992 3296 -17 216 158 0 0 chr3 127911263 127911320 -90125838 + (TG)n Simple_repeat Simple_repeat 2 58 0 612 310 54 4 chr3 127911620 127911862 -90125296 - MIR SINE MIR 0 262 9 412 303 15 0 chr3 127912671 127912803 -90124355 + MER94 DNA DNA 1 134 0 23 78 0 0 chr3 127913795 127913846 -90123312 + AT_rich Low_complexity Low_complexity 1 51 0 271 196 0 0 chr3 127913999 127914045 -90123113 + L2 LINE L2 3227 3272 0 302 316 37 15 chr3 127914045 127914181 -90122977 + MIR3 SINE MIR 60 198 -10 1916 163 0 3 chr3 127914184 127914485 -90122673 + AluSx SINE Alu 9 308 -4 191 35 0 35 chr3 127914944 127914973 -90122185 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 28 29 0 0 chr3 127915171 127915206 -90121952 + AT_rich Low_complexity Low_complexity 1 35 0 291 308 93 19 chr3 127915679 127915786 -90121372 + L2 LINE L2 3198 3312 -1 339 253 194 35 chr3 127915964 127916134 -90121024 + MIR SINE MIR 30 226 -36 212 98 24 24 chr3 127917686 127917727 -90119431 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 199 209 0 0 chr3 127917920 127917963 -90119195 - MIR3 SINE MIR 0 208 166 497 312 92 60 chr3 127918823 127919439 -90117719 - L3 LINE CR1 -303 1274 639 21 36 0 0 chr3 127919538 127919566 -90117592 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 127920202 127920223 -90116935 + AT_rich Low_complexity Low_complexity 1 21 0 215 333 82 25 chr3 127920510 127920669 -90116489 - MIR SINE MIR -13 249 82 1275 283 80 34 chr3 127920807 127921309 -90115849 - MLT1G LTR MaLR -60 530 1 193 311 29 68 chr3 127921483 127921586 -90115572 + MER5A DNA MER1_type 73 171 -18 183 310 17 0 chr3 127921534 127921592 -90115566 - MER5A DNA MER1_type -106 83 25 * 472 339 52 17 chr3 127922857 127923031 -90114127 + MER5A DNA MER1_type 10 189 0 3820 182 35 61 chr3 127923461 127924843 -90112315 - L1MB3 LINE L1 -2 6417 5077 1800 181 3 3 chr3 127924859 127925185 -90111973 + MER47A DNA MER2_type 18 343 -23 11166 208 56 19 chr3 127925240 127927255 -90109903 - L1MB3 LINE L1 -1303 5079 3140 2074 126 14 0 chr3 127927255 127927548 -90109610 - AluSg1 SINE Alu -12 297 1 11166 208 56 19 chr3 127927548 127928667 -90108491 - L1MB3 LINE L1 -3242 3140 2064 1556 196 13 10 chr3 127928667 127928978 -90108180 + AluJo SINE Alu 1 312 0 11166 208 56 19 chr3 127928978 127930722 -90106436 - L1MB3 LINE L1 -4318 2064 16 238 285 130 24 chr3 127931526 127931649 -90105509 + MIR SINE MIR 111 246 -16 21 36 0 0 chr3 127931658 127931686 -90105472 + AT_rich Low_complexity Low_complexity 1 28 0 213 295 16 0 chr3 127933678 127933739 -90103419 + MER5A DNA MER1_type 128 189 0 335 270 93 12 chr3 127934078 127934244 -90102914 - MIR SINE MIR -42 166 16 1041 177 0 0 chr3 127935502 127935660 -90101498 + FAM SINE Alu 1 158 -17 32 26 0 0 chr3 127935672 127935711 -90101447 + AT_rich Low_complexity Low_complexity 1 39 0 342 277 0 39 chr3 127937928 127938058 -90099100 + A-rich Low_complexity Low_complexity 3 127 0 624 321 47 5 chr3 127939135 127939350 -90097808 + MIR SINE MIR 13 241 -21 1619 196 16 16 chr3 127939404 127939715 -90097443 - AluJb SINE Alu 0 312 2 2118 116 0 0 chr3 127940360 127940675 -90096483 - AluSg SINE Alu 0 315 1 21 0 0 0 chr3 127941253 127941274 -90095884 + AT_rich Low_complexity Low_complexity 1 21 0 248 288 25 0 chr3 127942369 127942449 -90094709 - MIR3 SINE MIR -6 202 121 2432 86 0 0 chr3 127942652 127942954 -90094204 - AluSx SINE Alu -10 302 1 2522 62 0 0 chr3 127943153 127943459 -90093699 + AluY SINE Alu 1 306 -5 725 115 13 0 chr3 127943480 127943599 -90093559 - LTR12 LTR ERV1 -133 581 359 326 203 0 0 chr3 127943599 127943668 -90093490 - LTR30 LTR ERV1 -98 624 556 582 140 15 17 chr3 127943672 127943843 -90093315 - LTR12 LTR ERV1 -430 284 1 2338 103 0 0 chr3 127944005 127944315 -90092843 - AluSg SINE Alu 0 310 1 301 308 13 0 chr3 127944377 127944455 -90092703 - L2 LINE L2 -1 3271 3193 326 228 0 167 chr3 127944997 127945177 -90091981 + MIR SINE MIR 113 262 0 222 320 17 74 chr3 127945555 127945730 -90091428 - L2 LINE L2 -235 3037 2873 520 318 128 14 chr3 127946421 127946632 -90090526 - MIR SINE MIR -14 248 14 394 302 60 68 chr3 127946619 127946835 -90090323 + MIR SINE MIR 13 228 -34 * 2189 127 0 0 chr3 127946835 127947134 -90090024 - AluSx SINE Alu -13 299 1 394 302 60 68 chr3 127947134 127947169 -90089989 + MIR SINE MIR 228 262 0 219 88 0 0 chr3 127947936 127947970 -90089188 + (CA)n Simple_repeat Simple_repeat 2 35 0 212 395 32 6 chr3 127948691 127948848 -90088310 - L3 LINE CR1 -1078 499 339 180 241 0 0 chr3 127948956 127949014 -90088144 + (CTA)n Simple_repeat Simple_repeat 2 59 0 284 273 204 23 chr3 127949033 127949205 -90087953 - MIR SINE MIR -44 218 16 296 228 132 102 chr3 127949349 127949516 -90087642 + MER5B DNA MER1_type 7 178 0 212 162 0 0 chr3 127949895 127949932 -90087226 + (CAT)n Simple_repeat Simple_repeat 3 39 0 286 293 24 24 chr3 127949972 127950054 -90087104 + MIR3 SINE MIR 85 166 -42 200 83 0 28 chr3 127951317 127951353 -90085805 + (TTAAA)n Simple_repeat Simple_repeat 1 35 0 518 282 0 8 chr3 127951353 127951484 -90085674 - MER3 DNA MER1_type -78 131 2 193 305 49 12 chr3 127951543 127951625 -90085533 + MIR SINE MIR 101 185 -77 245 270 260 28 chr3 127951935 127952129 -90085029 - MIR3 SINE MIR -25 237 4 329 334 25 109 chr3 127952347 127952715 -90084443 - L2 LINE L2 0 3272 2936 731 293 50 5 chr3 127952749 127952971 -90084187 - MIR SINE MIR -12 250 19 619 257 29 17 chr3 127952971 127953221 -90083937 - L1ME4a LINE L1 -192 5929 5677 377 349 8 15 chr3 127954618 127954750 -90082408 + L2 LINE L2 3137 3267 -5 27 0 0 0 chr3 127957743 127957770 -90079388 + AT_rich Low_complexity Low_complexity 1 27 0 38 0 0 0 chr3 127959811 127959849 -90077309 + AT_rich Low_complexity Low_complexity 1 38 0 1643 130 91 72 chr3 127960011 127960342 -90076816 - MER1B DNA MER1_type 0 337 1 247 217 17 0 chr3 127962665 127962725 -90074433 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 2037 56 0 49 chr3 127964080 127964364 -90072794 - AluY SINE Alu -3 308 39 362 320 124 31 chr3 127966934 127967193 -90069965 - HAL1 LINE L1 -1 2506 2224 727 290 0 6 chr3 127969282 127969458 -90067700 - MIR3 SINE MIR -11 197 23 2255 98 0 0 chr3 127970021 127970352 -90066806 - AluSg SINE Alu 0 331 1 372 210 89 48 chr3 127971431 127971555 -90065603 + MER103 DNA DNA 36 164 -2 189 121 0 0 chr3 127973625 127973658 -90063500 + (CA)n Simple_repeat Simple_repeat 2 34 0 623 335 106 27 chr3 127975038 127975612 -90061546 - L2 LINE L2 -1 3312 2682 23 33 0 0 chr3 127976471 127976501 -90060657 + AT_rich Low_complexity Low_complexity 1 30 0 1532 135 0 9 chr3 127976766 127976995 -90060163 - AluSg/x SINE Alu -2 310 84 192 152 0 0 chr3 127977560 127977593 -90059565 + CT-rich Low_complexity Low_complexity 4 36 0 229 182 0 52 chr3 127979768 127979845 -90057313 + CT-rich Low_complexity Low_complexity 3 75 0 226 320 66 33 chr3 127980411 127980533 -90056625 + MIR SINE MIR 19 144 -64 236 269 0 0 chr3 127982019 127982071 -90055087 - L2 LINE L2 -4 3268 3217 2273 68 0 10 chr3 127983131 127983427 -90053731 + AluY SINE Alu 1 293 -18 1421 141 16 8 chr3 127984120 127984368 -90052790 - L1PB1 LINE L1 0 6151 5902 1471 180 32 32 chr3 127985449 127985727 -90051431 + AluJo SINE Alu 1 278 -34 207 0 0 0 chr3 127985727 127985750 -90051408 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 205 311 14 14 chr3 127986823 127986897 -90050261 - L3 LINE CR1 -11 1566 1493 279 157 0 0 chr3 127986957 127987008 -90050150 + GA-rich Low_complexity Low_complexity 2 52 0 237 219 0 0 chr3 127987052 127987116 -90050042 + L1MC4 LINE L1 6640 6703 -1339 28 0 0 0 chr3 127988631 127988659 -90048499 + AT_rich Low_complexity Low_complexity 1 28 0 316 335 62 34 chr3 127989788 127989964 -90047194 - MIR3 SINE MIR -14 194 14 744 172 0 30 chr3 127991049 127991183 -90045975 - MER94 DNA DNA 0 134 5 258 257 54 40 chr3 127991324 127991398 -90045760 - L2 LINE L2 -4 3309 3235 217 326 43 22 chr3 127991508 127991600 -90045558 - MIR SINE MIR -120 142 49 21 0 0 0 chr3 127992002 127992023 -90045135 + AT_rich Low_complexity Low_complexity 1 21 0 506 272 101 22 chr3 127992651 127992879 -90044279 - MLT1J LTR MaLR -7 504 259 305 198 17 147 chr3 127993779 127993895 -90043263 + MIR SINE MIR 160 260 -2 380 255 21 0 chr3 127995621 127995715 -90041443 + MER21B LTR ERV1 1 96 -767 466 244 69 0 chr3 127995754 127995885 -90041273 + MER21B LTR ERV1 98 237 -626 1509 185 4 18 chr3 127995928 127996204 -90040954 + AluJo SINE Alu 30 301 -11 2344 97 0 0 chr3 127997251 127997549 -90039609 - AluSx SINE Alu -14 298 1 246 236 65 0 chr3 127998879 127999002 -90038156 + (TA)n Simple_repeat Simple_repeat 1 131 0 26 30 0 0 chr3 128000324 128000357 -90036801 + AT_rich Low_complexity Low_complexity 1 33 0 23 54 0 0 chr3 128000389 128000426 -90036732 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr3 128000448 128000470 -90036688 + AT_rich Low_complexity Low_complexity 1 22 0 25 75 0 0 chr3 128002246 128002299 -90034859 + AT_rich Low_complexity Low_complexity 1 53 0 319 236 31 63 chr3 128002988 128003115 -90034043 - L2 LINE L2 0 3313 3191 214 183 50 0 chr3 128006320 128006380 -90030778 + CT-rich Low_complexity Low_complexity 3 65 0 247 324 0 0 chr3 128009074 128009148 -90028010 - L3 LINE CR1 -9 1568 1495 1698 166 3 27 chr3 128009928 128010223 -90026935 - AluJb SINE Alu -21 291 4 253 379 37 12 chr3 128010728 128010889 -90026269 + MIR SINE MIR 48 212 -50 1735 130 0 0 chr3 128011122 128011361 -90025797 + AluSg SINE Alu 1 239 -71 1815 66 0 9 chr3 128011361 128011588 -90025570 - AluY SINE Alu -85 226 2 513 0 0 0 chr3 128011920 128011977 -90025181 + (CA)n Simple_repeat Simple_repeat 2 58 0 618 223 0 33 chr3 128011977 128012098 -90025060 - FLAM_A SINE Alu -15 118 2 347 361 161 20 chr3 128012130 128012379 -90024779 + L2 LINE L2 2954 3237 -35 24 53 0 0 chr3 128014084 128014122 -90023036 + AT_rich Low_complexity Low_complexity 1 38 0 365 358 64 17 chr3 128014288 128014461 -90022697 + MIR3 SINE MIR 19 199 -9 24 0 0 0 chr3 128014776 128014800 -90022358 + AT_rich Low_complexity Low_complexity 1 24 0 248 364 57 45 chr3 128014824 128015071 -90022087 - L2 LINE L2 -355 2959 2710 1992 179 33 3 chr3 128015085 128015453 -90021705 - MLT1B LTR MaLR 0 390 12 299 257 277 20 chr3 128015669 128015817 -90021341 - L2 LINE L2 -3 3310 3125 21 0 0 0 chr3 128016595 128016616 -90020542 + AT_rich Low_complexity Low_complexity 1 21 0 897 276 129 27 chr3 128017052 128017528 -90019630 + LTR33A LTR ERVL 25 519 -4 2069 108 7 10 chr3 128018885 128019173 -90017985 - AluSx SINE Alu -25 287 1 2271 104 0 3 chr3 128019263 128019561 -90017597 - AluSp SINE Alu -15 298 2 342 354 50 17 chr3 128020659 128020840 -90016318 - L3 LINE CR1 -14 1563 1377 24 32 0 0 chr3 128020862 128020893 -90016265 + AT_rich Low_complexity Low_complexity 1 31 0 1220 186 5 32 chr3 128022335 128022555 -90014603 + MER20 DNA MER1_type 6 219 0 335 339 123 0 chr3 128022663 128022834 -90014324 + MIR SINE MIR 13 204 -58 230 192 0 0 chr3 128023450 128023502 -90013656 + L1MC4 LINE L1 6652 6703 -1339 316 347 21 0 chr3 128023534 128023629 -90013529 - MIR3 SINE MIR -24 184 88 201 196 0 0 chr3 128024930 128024976 -90012182 + CT-rich Low_complexity Low_complexity 1 46 0 1328 204 0 4 chr3 128025039 128025269 -90011889 + AluJo SINE Alu 3 231 -81 36 23 0 0 chr3 128025270 128025313 -90011845 + AT_rich Low_complexity Low_complexity 1 43 0 227 271 31 10 chr3 128025484 128025580 -90011578 + MER103 DNA DNA 57 154 -12 25 95 0 0 chr3 128025935 128026009 -90011149 + AT_rich Low_complexity Low_complexity 1 74 0 1055 167 42 21 chr3 128026751 128026990 -90010168 + L1MA4 LINE L1 5929 6172 -128 2292 59 0 0 chr3 128027018 128027288 -90009870 - AluY SINE Alu -8 303 34 291 161 0 0 chr3 128027736 128027792 -90009366 + A-rich Low_complexity Low_complexity 1 56 0 439 258 73 94 chr3 128031858 128032091 -90005067 - MIR SINE MIR -12 250 23 199 316 161 30 chr3 128032953 128033121 -90004037 - L2 LINE L2 0 3313 3124 1086 244 125 22 chr3 128034936 128035345 -90001813 - MLT1C LTR MaLR 0 467 17 337 208 10 83 chr3 128035509 128035605 -90001553 - L2 LINE L2 0 3272 3184 361 293 77 31 chr3 128036860 128037082 -90000076 - L1ME4a LINE L1 -200 5921 5690 238 191 0 0 chr3 128037087 128037129 -90000029 + MIR SINE MIR 211 252 -10 2550 32 13 13 chr3 128037415 128037726 -89999432 + AluY SINE Alu 1 311 0 404 257 162 0 chr3 128038203 128038339 -89998819 - MIR3 SINE MIR -5 203 46 306 0 0 0 chr3 128038574 128038608 -89998550 + (CA)n Simple_repeat Simple_repeat 2 35 0 247 240 40 144 chr3 128038907 128039032 -89998126 - MIR3 SINE MIR -37 171 60 * 276 301 58 17 chr3 128039029 128039225 -89997933 + MIR SINE MIR 7 206 -56 2376 69 10 0 chr3 128039278 128039581 -89997577 - AluY SINE Alu -5 306 1 405 0 0 0 chr3 128040058 128040103 -89997055 + (TG)n Simple_repeat Simple_repeat 2 46 0 1137 169 99 21 chr3 128040145 128040239 -89996919 - L1M3 LINE L1 -760 5386 5301 261 0 0 0 chr3 128040239 128040268 -89996890 + (TG)n Simple_repeat Simple_repeat 2 30 0 1833 140 7 34 chr3 128040268 128040561 -89996597 - AluSx SINE Alu -27 285 1 1137 169 99 21 chr3 128040561 128040874 -89996284 - L1M3 LINE L1 -844 5302 5104 3259 165 25 20 chr3 128040874 128041507 -89995651 + L1MB1 LINE L1 5520 6166 -2 774 207 11 56 chr3 128041642 128041821 -89995337 + FAM SINE Alu 1 171 -4 426 289 63 25 chr3 128042697 128042856 -89994302 + MIR SINE MIR 86 250 -12 220 314 93 23 chr3 128043001 128043087 -89994071 - MIR SINE MIR -126 136 45 848 363 63 35 chr3 128044019 128044586 -89992572 + L3 LINE CR1 993 1575 -2 349 205 27 80 chr3 128044805 128044917 -89992241 - MLT1J LTR MaLR -8 503 398 358 313 57 32 chr3 128044951 128045235 -89991923 - MLT1J2 LTR MaLR -177 273 11 243 278 30 112 chr3 128045265 128045434 -89991724 + L2 LINE L2 3159 3313 0 2258 116 3 0 chr3 128045651 128045954 -89991204 + AluSx SINE Alu 1 304 -8 2346 179 15 44 chr3 128046379 128046903 -89990255 - L1MB1 LINE L1 -1 6167 5659 2168 127 48 20 chr3 128046905 128047259 -89989899 - THE1B LTR MaLR 0 364 1 486 227 0 0 chr3 128047265 128047375 -89989783 + L1M3 LINE L1 5551 5660 -508 3563 132 12 23 chr3 128048968 128049614 -89987544 - L1MA8 LINE L1 -2 6289 5651 1802 176 45 44 chr3 128049731 128050272 -89986886 - MLT2A2 LTR ERVL -8 546 3 198 118 0 0 chr3 128050274 128050308 -89986850 + (CAT)n Simple_repeat Simple_repeat 2 35 0 1954 101 3 14 chr3 128050400 128050721 -89986437 + AluY SINE Alu 1 318 0 42482 36 22 1 chr3 128051027 128056920 -89980238 + L1PA2 LINE L1 1 6020 -135 239 354 14 61 chr3 128057988 128058135 -89979023 + L2 LINE L2 3066 3205 -67 27 62 0 0 chr3 128058135 128058183 -89978975 + AT_rich Low_complexity Low_complexity 1 48 0 203 383 14 21 chr3 128058568 128058709 -89978449 + MER5A DNA MER1_type 2 141 -48 336 388 0 0 chr3 128060286 128060389 -89976769 + L2 LINE L2 3134 3236 -36 2063 135 141 5 chr3 128060715 128061092 -89976066 + MSTA LTR MaLR 1 428 0 36 0 0 0 chr3 128061739 128061775 -89975383 + AT_rich Low_complexity Low_complexity 1 36 0 2121 122 7 3 chr3 128062066 128062361 -89974797 + AluSx SINE Alu 1 296 -16 255 125 0 0 chr3 128062404 128062444 -89974714 + (CA)n Simple_repeat Simple_repeat 1 40 0 292 333 94 15 chr3 128062558 128062759 -89974399 + L2 LINE L2 3092 3308 -5 22 56 0 0 chr3 128062905 128062941 -89974217 + AT_rich Low_complexity Low_complexity 1 36 0 191 282 21 120 chr3 128063799 128063941 -89973217 - L2 LINE L2 0 3313 3186 248 412 9 18 chr3 128064453 128064567 -89972591 + L3 LINE CR1 1464 1576 -1 1341 113 87 0 chr3 128065034 128065264 -89971894 + L1MA5A LINE L1 6044 6293 -4 183 395 12 0 chr3 128067316 128067397 -89969761 - L2 LINE L2 -2 3270 3189 35 0 0 0 chr3 128068401 128068436 -89968722 + AT_rich Low_complexity Low_complexity 1 35 0 323 230 51 48 chr3 128068436 128068607 -89968551 + L1ME1 LINE L1 6025 6147 -19 263 217 17 0 chr3 128069219 128069279 -89967879 + MLT1L LTR MaLR 139 199 -416 862 284 24 8 chr3 128069281 128069531 -89967627 - MIR SINE MIR -2 260 7 386 226 9 26 chr3 128069678 128069793 -89967365 + MLT1L LTR MaLR 492 604 -11 286 259 163 15 chr3 128069850 128069985 -89967173 - MIR SINE MIR -58 204 50 758 248 97 24 chr3 128071252 128071664 -89965494 + L1M4 LINE L1 3912 4353 -1793 1440 201 79 4 chr3 128071884 128072163 -89964995 + AluJo SINE Alu 5 304 -8 2160 139 7 0 chr3 128072170 128072480 -89964678 + AluSx SINE Alu 1 312 0 202 182 0 0 chr3 128072480 128072513 -89964645 + polypurine Low_complexity Low_complexity 4 36 0 183 267 89 0 chr3 128073200 128073245 -89963913 - L2 LINE L2 -56 3216 3168 315 0 0 0 chr3 128074475 128074510 -89962648 + (TG)n Simple_repeat Simple_repeat 2 36 0 349 345 32 88 chr3 128075070 128075319 -89961839 - L2 LINE L2 -32 3240 3006 1708 173 3 24 chr3 128075485 128075808 -89961350 - AluJb SINE Alu 0 317 1 2228 87 0 7 chr3 128075817 128076116 -89961042 - AluY SINE Alu -14 297 1 197 326 121 26 chr3 128076500 128076690 -89960468 + L2 LINE L2 2822 3029 -243 306 0 0 0 chr3 128077439 128077473 -89959685 + (TG)n Simple_repeat Simple_repeat 2 35 0 307 310 19 57 chr3 128078650 128078808 -89958350 - MER5B DNA MER1_type 0 178 27 247 250 66 53 chr3 128079249 128079401 -89957757 - LTR33A LTR ERVL 0 523 370 280 269 142 8 chr3 128079475 128079609 -89957549 - LTR33A LTR ERVL -318 205 54 2161 68 0 7 chr3 128079908 128080187 -89956971 + AluY SINE Alu 1 277 -34 338 0 24 0 chr3 128080190 128080232 -89956926 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 188 292 73 51 chr3 128081369 128081506 -89955652 + MIR SINE MIR 73 212 -50 247 217 0 43 chr3 128081769 128081838 -89955320 - MIR3 SINE MIR -21 187 122 210 366 0 0 chr3 128082603 128082686 -89954472 - MIR SINE MIR -70 138 72 303 307 29 44 chr3 128083217 128083354 -89953804 + MER5A DNA MER1_type 3 137 -52 1302 101 0 0 chr3 128083357 128083549 -89953609 - AluY SINE Alu 0 305 114 22 0 0 0 chr3 128084144 128084166 -89952992 + AT_rich Low_complexity Low_complexity 1 22 0 369 0 0 0 chr3 128084474 128084515 -89952643 + (TG)n Simple_repeat Simple_repeat 2 42 0 415 187 11 0 chr3 128084578 128084669 -89952489 - L1MA8 LINE L1 -3 6288 6197 365 180 0 0 chr3 128085182 128085243 -89951915 + MER63 DNA MER1_type 676 736 -324 792 298 153 15 chr3 128085249 128085642 -89951516 + L2 LINE L2 2867 3313 0 2015 61 0 0 chr3 128086552 128086813 -89950345 + L1PA13 LINE L1 5899 6159 -4 410 184 140 66 chr3 128089465 128089601 -89947557 - MLT1C LTR MaLR -316 151 6 221 272 5 41 chr3 128089748 128089832 -89947326 - MIR SINE MIR -114 94 18 284 244 74 15 chr3 128089869 128090004 -89947154 - L1MC/D LINE L1 -2056 5752 5610 216 350 24 41 chr3 128090212 128090335 -89946823 + MIR SINE MIR 18 138 -70 239 198 0 127 chr3 128090384 128090510 -89946648 + AluSp SINE Alu 30 139 -164 1600 145 18 18 chr3 128090665 128090947 -89946211 + AluSc SINE Alu 21 302 -7 24 0 0 0 chr3 128091148 128091172 -89945986 + AT_rich Low_complexity Low_complexity 1 24 0 455 222 43 49 chr3 128092084 128092246 -89944912 + AluSq SINE Alu 140 300 -13 317 216 176 0 chr3 128092451 128092553 -89944605 - MER63 DNA MER1_type -316 746 1 2459 209 7 6 chr3 128092624 128093165 -89943993 - L1P LINE L1 -1798 4348 3807 25 0 0 0 chr3 128093222 128093247 -89943911 + GC_rich Low_complexity Low_complexity 1 25 0 1506 111 21 0 chr3 128093445 128093680 -89943478 + L1PB1 LINE L1 5911 6150 -1 209 125 0 25 chr3 128093700 128093740 -89943418 + (TAAAAA)n Simple_repeat Simple_repeat 3 41 0 251 246 90 37 chr3 128093760 128093894 -89943264 + MLT1D LTR MaLR 91 231 -274 1477 199 4 15 chr3 128094831 128095103 -89942055 - AluJo SINE Alu -30 282 14 25 0 0 0 chr3 128095796 128095821 -89941337 + AT_rich Low_complexity Low_complexity 1 25 0 272 320 10 80 chr3 128096322 128096422 -89940736 + L2 LINE L2 3162 3254 -18 240 243 0 0 chr3 128096422 128096496 -89940662 + (TGGA)n Simple_repeat Simple_repeat 3 76 0 1260 122 40 18 chr3 128096709 128096931 -89940227 + L1PB2 LINE L1 5925 6151 0 2568 48 0 16 chr3 128096944 128097258 -89939900 + AluY SINE Alu 1 309 -2 248 103 0 0 chr3 128097429 128097468 -89939690 - L1MC4 LINE L1 -1339 6703 6665 1109 241 13 0 chr3 128097554 128097791 -89939367 + MIR SINE MIR 2 241 -21 252 327 148 43 chr3 128097894 128098313 -89938845 - L2 LINE L2 0 3313 2851 216 67 0 0 chr3 128098463 128098493 -89938665 + (TG)n Simple_repeat Simple_repeat 2 31 0 593 124 43 0 chr3 128099273 128099434 -89937724 + (TA)n Simple_repeat Simple_repeat 2 169 0 210 200 13 27 chr3 128099552 128099627 -89937531 + C-rich Low_complexity Low_complexity 3 76 0 183 121 0 61 chr3 128099630 128099696 -89937462 + (CCCCG)n Simple_repeat Simple_repeat 1 62 0 263 262 6 18 chr3 128099763 128099935 -89937223 + C-rich Low_complexity Low_complexity 1 170 0 256 138 0 35 chr3 128100148 128100206 -89936952 + (GGGGA)n Simple_repeat Simple_repeat 1 56 0 5674 18 0 3 chr3 128100900 128101555 -89935603 + L1PA4 LINE L1 5500 6152 -3 303 71 0 0 chr3 128101834 128101876 -89935282 + (TG)n Simple_repeat Simple_repeat 2 43 0 227 191 16 0 chr3 128101992 128102055 -89935103 + (CA)n Simple_repeat Simple_repeat 2 65 0 267 292 58 53 chr3 128103476 128103647 -89933511 + MER3 DNA MER1_type 37 208 -1 * 941 201 5 0 chr3 128103647 128103687 -89933471 - MER3 DNA MER1_type -160 49 9 430 325 16 0 chr3 128103742 128103868 -89933290 + MER5A DNA MER1_type 55 182 -7 828 140 0 7 chr3 128103945 128104088 -89933070 - L1PA15 LINE L1 0 6165 6024 425 168 26 18 chr3 128104088 128104201 -89932957 + CT-rich Low_complexity Low_complexity 1 114 0 2110 127 7 0 chr3 128104223 128104515 -89932643 - AluSq SINE Alu -19 294 1 7454 173 78 6 chr3 128104515 128105682 -89931476 - L1PA15 LINE L1 -132 6033 4951 320 22 0 43 chr3 128105682 128105728 -89931430 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 7454 173 78 6 chr3 128105728 128107014 -89930144 - L1PA15 LINE L1 -1214 4951 3396 228 216 175 21 chr3 128107362 128107459 -89929699 - L3 LINE CR1 0 1577 1466 182 250 98 71 chr3 128107460 128107572 -89929586 + MER5A DNA MER1_type 74 188 -1 298 304 71 99 chr3 128107573 128107965 -89929193 - L3 LINE CR1 -105 1472 1092 192 152 0 0 chr3 128108925 128108958 -89928200 + (TATATG)n Simple_repeat Simple_repeat 4 36 0 288 91 0 0 chr3 128108963 128109007 -89928151 + (CA)n Simple_repeat Simple_repeat 2 45 0 275 298 46 69 chr3 128109023 128109102 -89928056 - L2 LINE L2 -11 3261 3184 2147 109 0 11 chr3 128109102 128109417 -89927741 + AluSq SINE Alu 1 312 0 275 298 46 69 chr3 128109417 128109467 -89927691 - L2 LINE L2 -88 3184 3134 189 132 0 0 chr3 128109573 128109611 -89927547 + (A)n Simple_repeat Simple_repeat 1 38 0 330 279 36 21 chr3 128109743 128109883 -89927275 - Charlie7 DNA MER1_type -2469 143 2 400 353 42 11 chr3 128109925 128110208 -89926950 - L2 LINE L2 -358 2956 2665 252 228 0 0 chr3 128110510 128110567 -89926591 - MIR SINE MIR -50 212 156 31 44 0 0 chr3 128110734 128110779 -89926379 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr3 128111575 128111596 -89925562 + AT_rich Low_complexity Low_complexity 1 21 0 214 273 154 9 chr3 128111938 128112048 -89925110 + L2 LINE L2 3188 3313 0 648 328 38 13 chr3 128112149 128112387 -89924771 + MIR SINE MIR 2 245 -17 194 323 16 0 chr3 128112702 128112764 -89924394 + L3 LINE CR1 1049 1111 -466 400 381 12 6 chr3 128113155 128113315 -89923843 + L2 LINE L2 2895 3055 -217 234 359 163 20 chr3 128116918 128117322 -89919836 + L3 LINE CR1 118 579 -998 208 301 81 32 chr3 128117464 128117587 -89919571 + L3 LINE CR1 877 1005 -572 399 331 164 31 chr3 128117622 128117909 -89919249 - L3 LINE CR1 -1 1576 1252 326 213 19 93 chr3 128118125 128118233 -89918925 - L3 LINE CR1 -624 953 854 358 319 11 6 chr3 128118700 128118882 -89918276 + L1MEd LINE L1 974 1156 -5049 1752 174 44 81 chr3 128118934 128119364 -89917794 + MLT2D LTR ERVL 1 414 0 252 271 69 27 chr3 128119548 128119736 -89917422 + L1MEd LINE L1 1432 1627 -4769 1363 230 49 0 chr3 128120088 128120375 -89916783 - AluJo SINE Alu -11 301 1 275 285 67 35 chr3 128120648 128121016 -89916142 + L1MEd LINE L1 3014 3403 -2812 1661 97 35 0 chr3 128121016 128121274 -89915884 - L1MA1 LINE L1 0 6302 6036 275 285 67 35 chr3 128121274 128121397 -89915761 + L1MEd LINE L1 3403 3521 -2694 217 171 80 0 chr3 128121559 128121647 -89915511 + (TA)n Simple_repeat Simple_repeat 1 95 0 561 372 197 8 chr3 128121758 128122266 -89914892 + L3 LINE CR1 942 1545 -32 417 322 73 33 chr3 128122626 128122871 -89914287 + LTR16A LTR ERVL 17 271 -179 199 171 66 0 chr3 128125554 128125630 -89911528 + (TA)n Simple_repeat Simple_repeat 2 82 0 21 0 0 0 chr3 128126185 128126206 -89910952 + AT_rich Low_complexity Low_complexity 1 21 0 202 167 0 0 chr3 128126361 128126397 -89910761 + L2 LINE L2 3277 3312 -1 319 323 98 38 chr3 128126474 128126607 -89910551 + MER5A DNA MER1_type 4 144 -45 1128 222 74 57 chr3 128127300 128127743 -89909415 + MLT1C LTR MaLR 18 464 -3 308 225 432 6 chr3 128129152 128129321 -89907837 + MIR SINE MIR 10 250 -12 474 269 49 102 chr3 128129416 128129661 -89907497 + MIR SINE MIR 18 249 -13 406 291 236 35 chr3 128129752 128130298 -89906860 - L2 LINE L2 0 3313 2667 232 300 100 0 chr3 128130875 128130975 -89906183 + L2 LINE L2 3195 3304 -9 1609 169 6 70 chr3 128131018 128131349 -89905809 + AluJo SINE Alu 1 310 -2 2268 126 0 0 chr3 128132502 128132812 -89904346 + AluSx SINE Alu 1 310 -2 537 319 87 50 chr3 128133005 128133339 -89903819 - MLT1K LTR MaLR -163 425 74 2408 76 0 3 chr3 128133339 128133642 -89903516 + AluY SINE Alu 1 302 -9 537 319 87 50 chr3 128133642 128133686 -89903472 - MLT1K LTR MaLR -514 74 33 25 51 0 0 chr3 128133914 128133953 -89903205 + AT_rich Low_complexity Low_complexity 1 39 0 185 354 121 10 chr3 128136245 128136344 -89900814 + MIR SINE MIR 20 129 -133 284 315 63 27 chr3 128136424 128136535 -89900623 + L2 LINE L2 3156 3270 -2 234 0 0 0 chr3 128136908 128136934 -89900224 + (A)n Simple_repeat Simple_repeat 1 26 0 2043 130 3 7 chr3 128137744 128138051 -89899107 - AluSx SINE Alu -6 306 1 507 310 122 13 chr3 128141951 128142254 -89894904 - L2 LINE L2 0 3313 2978 306 263 70 13 chr3 128142385 128142541 -89894617 - L1ME4a LINE L1 -234 5887 5723 814 278 11 53 chr3 128142588 128142624 -89894534 + MIR SINE MIR 3 39 -223 1602 100 13 13 chr3 128142624 128142854 -89894304 + MER30 DNA MER1_type 1 230 0 814 278 11 53 chr3 128142854 128143083 -89894075 + MIR SINE MIR 39 257 -5 230 116 23 0 chr3 128144190 128144233 -89892925 + CT-rich Low_complexity Low_complexity 3 46 0 2157 128 0 6 chr3 128144670 128144982 -89892176 + AluSg SINE Alu 1 310 0 209 229 292 10 chr3 128145628 128145724 -89891434 + MER5A DNA MER1_type 67 189 0 21 0 0 0 chr3 128145814 128145835 -89891323 + AT_rich Low_complexity Low_complexity 1 21 0 301 283 101 10 chr3 128145884 128145983 -89891175 - L2 LINE L2 -8 3264 3157 1412 260 102 80 chr3 128146008 128146673 -89890485 + HAL1 LINE L1 12 691 -1816 2776 182 32 11 chr3 128146728 128147295 -89889863 + L1MC3 LINE L1 7206 7784 -1 475 220 28 18 chr3 128147326 128147435 -89889723 + HAL1 LINE L1 703 812 -1695 1452 219 102 6 chr3 128147518 128147860 -89889298 - MLT1H1 LTR MaLR 0 555 181 1978 99 0 73 chr3 128147880 128148214 -89888944 - AluSc SINE Alu 0 312 1 1377 266 74 41 chr3 128148217 128149150 -89888008 + HAL1 LINE L1 813 1812 -695 648 274 62 18 chr3 128149163 128149389 -89887769 + MIR SINE MIR 19 254 -8 244 274 0 0 chr3 128150333 128150395 -89886763 - MER92C LTR ERV1 0 554 493 534 209 10 21 chr3 128150498 128150623 -89886535 - MER92C LTR ERV1 -449 105 1 218 302 0 0 chr3 128150809 128150872 -89886286 + (TAA)n Simple_repeat Simple_repeat 2 64 0 2761 16 0 0 chr3 128150904 128151207 -89885951 + AluYa5 SINE Alu 1 303 -8 189 0 0 0 chr3 128151207 128151228 -89885930 + (TA)n Simple_repeat Simple_repeat 1 21 0 2456 101 70 23 chr3 128153400 128153828 -89883330 + LTR7 LTR ERV1 1 448 -2 17086 92 14 30 chr3 128153830 128156977 -89880181 + HERVH LTR ERV1 1 2987 -4726 794 169 20 0 chr3 128156971 128157119 -89880039 + HERVH LTR ERV1 3140 3290 -4423 * 3324 108 8 8 chr3 128157109 128157611 -89879547 + HERVH LTR ERV1 3492 3993 -3720 3771 139 76 3 chr3 128157613 128158230 -89878928 + HERVH LTR ERV1 4488 5149 -2564 1331 134 18 18 chr3 128158227 128158450 -89878708 + HERVH LTR ERV1 5597 5819 -1894 * 2532 70 44 21 chr3 128158448 128158831 -89878327 + HERVH LTR ERV1 7322 7713 0 2524 99 58 23 chr3 128158831 128159264 -89877894 + LTR7 LTR ERV1 1 448 -2 1979 153 7 3 chr3 128161130 128161437 -89875721 - AluSx SINE Alu -2 310 3 1359 180 108 129 chr3 128161774 128161809 -89875349 - MLT2B1 LTR ERVL 0 414 380 290 87 22 0 chr3 128161809 128161855 -89875303 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 1359 180 108 129 chr3 128161855 128162236 -89874922 - MLT2B1 LTR ERVL -34 380 7 1570 124 36 7 chr3 128162925 128163199 -89873959 + L1MA5A LINE L1 6011 6292 -5 235 345 0 0 chr3 128163485 128163572 -89873586 - L2 LINE L2 0 3313 3227 251 309 91 74 chr3 128163881 128164124 -89873034 - L2 LINE L2 -534 2780 2534 34 55 0 0 chr3 128164141 128164196 -89872962 + AT_rich Low_complexity Low_complexity 1 55 0 1867 155 7 0 chr3 128164243 128164520 -89872638 + AluSx SINE Alu 1 279 -33 347 313 23 16 chr3 128164585 128164713 -89872445 - L2 LINE L2 -890 2424 2296 294 504 126 4 chr3 128166091 128166379 -89870779 - AluSp SINE Alu 0 319 1 3168 231 123 24 chr3 128166573 128167130 -89870028 + L1MC4 LINE L1 6458 6959 -1083 2266 63 0 7 chr3 128167130 128167478 -89869680 + AluY SINE Alu 1 346 0 3168 231 123 24 chr3 128167478 128167995 -89869163 + L1MC4 LINE L1 6959 7639 -403 462 233 67 0 chr3 128168019 128168139 -89869019 + L1MC4 LINE L1 7914 8041 -1 26 0 0 0 chr3 128168208 128168234 -89868924 + AT_rich Low_complexity Low_complexity 1 26 0 324 346 0 6 chr3 128168460 128168619 -89868539 + L1ME LINE L1 4067 4224 -1922 26 101 0 0 chr3 128168633 128168722 -89868436 + AT_rich Low_complexity Low_complexity 1 89 0 2445 67 0 7 chr3 128169199 128169497 -89867661 + AluY SINE Alu 1 296 -15 300 325 118 5 chr3 128169573 128169776 -89867382 + L1ME LINE L1 4800 5025 -1121 2382 85 3 0 chr3 128169915 128170210 -89866948 + AluSx SINE Alu 1 296 -16 2265 94 3 3 chr3 128170320 128170617 -89866541 + AluSg SINE Alu 1 297 -13 2125 108 30 7 chr3 128170618 128170923 -89866235 + AluSp SINE Alu 1 312 -1 831 283 47 29 chr3 128170940 128171386 -89865772 + L1ME LINE L1 5329 5782 -339 5743 118 12 15 chr3 128172025 128173481 -89863677 + L1PA11 LINE L1 4242 5784 -390 2510 63 0 0 chr3 128173481 128173781 -89863377 + AluY SINE Alu 1 300 -11 5743 118 12 15 chr3 128173781 128174170 -89862988 + L1PA11 LINE L1 5784 6172 -2 2296 78 3 0 chr3 128174557 128174893 -89862265 - AluSp SINE Alu 0 338 2 22 35 0 0 chr3 128175051 128175080 -89862078 + AT_rich Low_complexity Low_complexity 1 29 0 218 337 112 47 chr3 128175496 128175944 -89861214 + L2 LINE L2 1942 2418 -896 262 219 100 152 chr3 128176417 128176627 -89860531 - L2 LINE L2 -425 2889 2691 25 51 0 0 chr3 128177789 128177828 -89859330 + AT_rich Low_complexity Low_complexity 1 39 0 461 304 23 61 chr3 128179378 128179641 -89857517 - MIR SINE MIR 0 262 10 32 26 0 0 chr3 128179714 128179753 -89857405 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr3 128180112 128180140 -89857018 + AT_rich Low_complexity Low_complexity 1 28 0 365 301 87 17 chr3 128180561 128180734 -89856424 + MIR SINE MIR 34 218 -44 1271 148 37 9 chr3 128180742 128180958 -89856200 - MLT1A1 LTR MaLR 0 365 144 2097 140 0 0 chr3 128181422 128181722 -89855436 + AluSq SINE Alu 1 300 -13 191 294 152 11 chr3 128183366 128183458 -89853700 - MIR SINE MIR -41 221 117 533 323 45 0 chr3 128183468 128183669 -89853489 - MIR SINE MIR -16 246 37 293 366 8 22 chr3 128184722 128184856 -89852302 - MIR SINE MIR -78 184 53 998 199 14 14 chr3 128186248 128186464 -89850694 - MER20 DNA MER1_type -2 217 2 9047 32 3 2 chr3 128187967 128189035 -89848123 + MER11C LTR ERVK 1 1069 -2 1064 157 17 6 chr3 128189376 128189548 -89847610 - FRAM SINE Alu -1 175 2 33 0 0 0 chr3 128189794 128189827 -89847331 + AT_rich Low_complexity Low_complexity 1 33 0 2456 69 0 0 chr3 128189960 128190265 -89846893 + AluY SINE Alu 1 305 -6 1427 173 92 35 chr3 128191438 128191721 -89845437 + AluJo SINE Alu 1 299 -13 183 42 0 0 chr3 128194638 128194662 -89842496 + (CA)n Simple_repeat Simple_repeat 1 24 0 240 349 12 0 chr3 128194996 128195082 -89842076 - MIR SINE MIR -61 147 61 206 118 0 0 chr3 128195128 128195162 -89841996 + (T)n Simple_repeat Simple_repeat 1 34 0 265 333 62 34 chr3 128195398 128195575 -89841583 - MIR SINE MIR -45 217 36 478 279 59 59 chr3 128196077 128196296 -89840862 + MIR SINE MIR 8 226 -36 189 154 0 0 chr3 128196322 128196361 -89840797 + (ATG)n Simple_repeat Simple_repeat 3 41 0 2994 103 43 0 chr3 128196595 128197033 -89840125 - L1PA14 LINE L1 -14 6147 5691 315 326 22 30 chr3 128197124 128197259 -89839899 + MER5A DNA MER1_type 55 188 -1 22 35 0 0 chr3 128197920 128197949 -89839209 + AT_rich Low_complexity Low_complexity 1 29 0 2101 96 32 0 chr3 128198153 128198435 -89838723 - AluSc SINE Alu -18 291 1 241 203 16 31 chr3 128198593 128198657 -89838501 + CT-rich Low_complexity Low_complexity 3 65 0 21 0 0 0 chr3 128199965 128199986 -89837172 + AT_rich Low_complexity Low_complexity 1 21 0 2143 141 0 0 chr3 128200766 128201071 -89836087 - AluSx SINE Alu -7 305 1 210 37 0 0 chr3 128202198 128202225 -89834933 + (CA)n Simple_repeat Simple_repeat 2 28 0 2182 104 0 24 chr3 128202790 128203088 -89834070 - AluSx SINE Alu -21 291 1 771 229 47 118 chr3 128203468 128203808 -89833350 - L2 LINE L2 0 3313 2998 354 286 164 18 chr3 128204049 128204220 -89832938 + MIR SINE MIR 20 215 -47 258 0 47 23 chr3 128204363 128204406 -89832752 + (TTTTA)n Simple_repeat Simple_repeat 3 46 0 2317 97 3 0 chr3 128204535 128204834 -89832324 - AluSp SINE Alu -11 302 3 306 295 19 9 chr3 128205136 128205241 -89831917 + GA-rich Low_complexity Low_complexity 5 110 0 33 43 0 0 chr3 128206818 128206865 -89830293 + AT_rich Low_complexity Low_complexity 1 47 0 346 352 9 0 chr3 128207052 128207157 -89830001 - MIR SINE MIR -60 148 43 408 20 0 0 chr3 128207333 128207382 -89829776 + (TG)n Simple_repeat Simple_repeat 2 50 0 388 330 0 0 chr3 128207491 128207606 -89829552 - MLT1K LTR MaLR -55 533 419 227 79 26 0 chr3 128209162 128209200 -89827958 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 199 245 57 0 chr3 128210012 128210065 -89827093 + L2 LINE L2 3196 3251 -21 1922 199 54 54 chr3 128210879 128211382 -89825776 + MLT1D LTR MaLR 1 503 -2 204 366 56 93 chr3 128211648 128211970 -89825188 + L2 LINE L2 2869 3178 -94 27 0 0 0 chr3 128212822 128212849 -89824309 + AT_rich Low_complexity Low_complexity 1 27 0 280 271 8 34 chr3 128212990 128213108 -89824050 + CT-rich Low_complexity Low_complexity 5 119 0 1223 283 70 44 chr3 128214852 128215351 -89821807 - LTR33 LTR ERVL -7 514 3 364 300 186 5 chr3 128216451 128216661 -89820497 + MIR SINE MIR 2 249 -13 342 277 39 84 chr3 128217197 128217352 -89819806 - L2 LINE L2 0 3272 3125 769 207 50 0 chr3 128217357 128217555 -89819603 + L1MA8 LINE L1 6081 6288 -3 216 86 0 0 chr3 128217905 128217940 -89819218 + (T)n Simple_repeat Simple_repeat 1 35 0 335 279 114 14 chr3 128219451 128219591 -89817567 + MIR SINE MIR 101 254 -8 189 0 0 0 chr3 128219748 128219769 -89817389 + (T)n Simple_repeat Simple_repeat 1 21 0 2380 67 0 10 chr3 128221333 128221646 -89815512 - AluY SINE Alu 0 311 2 536 242 81 0 chr3 128222201 128222325 -89814833 + MER20 DNA MER1_type 86 219 0 2299 97 3 3 chr3 128222583 128222883 -89814275 + AluSc SINE Alu 1 300 -9 212 244 141 111 chr3 128222970 128223105 -89814053 + MIR SINE MIR 124 262 0 204 67 0 0 chr3 128223485 128223515 -89813643 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1798 182 0 0 chr3 128224090 128224376 -89812782 + AluJb SINE Alu 4 289 -23 727 211 108 12 chr3 128224409 128224575 -89812583 + FRAM SINE Alu 1 176 0 549 278 162 14 chr3 128227004 128227220 -89809938 - MIR SINE MIR -11 251 4 242 296 17 43 chr3 128229333 128229448 -89807710 - MLT1J2 LTR MaLR -270 180 69 26 0 0 0 chr3 128232473 128232499 -89804659 + AT_rich Low_complexity Low_complexity 1 26 0 1600 170 46 25 chr3 128232499 128232781 -89804377 - AluJo SINE Alu -22 290 3 266 295 8 89 chr3 128232837 128233029 -89804129 + MIR SINE MIR 38 212 -50 207 224 26 26 chr3 128233060 128233136 -89804022 + T-rich Low_complexity Low_complexity 5 80 0 450 0 0 0 chr3 128233719 128233769 -89803389 + (A)n Simple_repeat Simple_repeat 1 50 0 185 282 35 59 chr3 128234549 128234634 -89802524 + L2 LINE L2 3178 3260 -12 213 300 73 64 chr3 128237250 128237360 -89799798 - MIR SINE MIR -56 206 96 274 296 111 41 chr3 128238575 128238699 -89798459 - MLT1H LTR MaLR -9 540 399 821 183 32 16 chr3 128238699 128238885 -89798273 + MER53 DNA DNA 1 189 0 274 296 111 41 chr3 128238885 128238932 -89798226 - MLT1H LTR MaLR -150 399 357 233 279 164 0 chr3 128239026 128239148 -89798010 - MLT1H LTR MaLR -387 162 21 326 288 62 62 chr3 128239219 128239396 -89797762 - MLT1K LTR MaLR -394 194 18 550 235 0 0 chr3 128239794 128239896 -89797262 + FRAM SINE Alu 12 113 -63 25 31 0 0 chr3 128240017 128240049 -89797109 + AT_rich Low_complexity Low_complexity 1 32 0 410 313 91 55 chr3 128240177 128240650 -89796508 + L1 LINE L1 4903 5392 -754 211 357 110 33 chr3 128240907 128241044 -89796114 + MIR SINE MIR 3 159 -103 252 86 0 0 chr3 128241044 128241079 -89796079 + (TAA)n Simple_repeat Simple_repeat 1 35 0 211 357 110 33 chr3 128241079 128241123 -89796035 + MIR SINE MIR 159 198 -64 232 280 210 10 chr3 128241576 128241676 -89795482 - L2 LINE L2 -14 3299 3180 214 299 57 124 chr3 128242032 128242242 -89794916 - L2 LINE L2 -465 2849 2671 2356 70 0 35 chr3 128242242 128242554 -89794604 - AluY SINE Alu -10 301 1 214 299 57 124 chr3 128242554 128242697 -89794461 - L2 LINE L2 -643 2671 2520 219 139 0 0 chr3 128242709 128242745 -89794413 + (TA)n Simple_repeat Simple_repeat 2 37 0 626 334 96 33 chr3 128242822 128243486 -89793672 - L2 LINE L2 -796 2518 1813 307 146 0 0 chr3 128243569 128243610 -89793548 + MER4E LTR ERV1 653 693 -73 280 387 0 0 chr3 128243888 128243994 -89793164 + MIR3 SINE MIR 4 109 -99 202 278 167 48 chr3 128244448 128244574 -89792584 + MIR3 SINE MIR 32 172 -36 224 354 184 9 chr3 128245333 128245545 -89791613 + MIR SINE MIR 12 260 -2 34 65 0 0 chr3 128245840 128245902 -89791256 + AT_rich Low_complexity Low_complexity 1 62 0 248 102 20 0 chr3 128246621 128246670 -89790488 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 25 75 0 0 chr3 128248254 128248307 -89788851 + AT_rich Low_complexity Low_complexity 1 53 0 1174 234 32 46 chr3 128248947 128249293 -89787865 + MER58B DNA MER1_type 1 341 0 32 26 0 0 chr3 128251361 128251400 -89785758 + AT_rich Low_complexity Low_complexity 1 39 0 222 359 0 0 chr3 128251572 128251636 -89785522 - L2 LINE L2 -67 3205 3142 231 214 0 0 chr3 128251667 128251709 -89785449 + Tigger5 DNA MER2_type 2271 2312 -11 416 208 26 0 chr3 128251716 128251793 -89785365 - Tigger5 DNA MER2_type -2244 79 1 209 402 0 0 chr3 128251915 128252012 -89785146 - L2 LINE L2 -289 3024 2928 210 143 0 0 chr3 128253576 128253611 -89783547 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 276 184 20 0 chr3 128254639 128254688 -89782470 + AluSg/x SINE Alu 115 164 -138 1315 92 0 0 chr3 128254688 128254852 -89782306 + AluY SINE Alu 126 289 -22 247 184 41 0 chr3 128255805 128255854 -89781304 + MER5A DNA MER1_type 62 112 -77 214 287 156 60 chr3 128256399 128256566 -89780592 + MIR SINE MIR 20 202 -60 969 202 11 5 chr3 128256745 128256933 -89780225 + MER5A DNA MER1_type 1 189 0 1354 234 19 47 chr3 128258298 128258662 -89778496 - MLT1A2 LTR MaLR -20 354 1 649 66 11 0 chr3 128459590 128459681 -89577477 + AluSg/x SINE Alu 219 310 0 235 319 131 6 chr3 128460400 128460560 -89576598 + MIR SINE MIR 68 247 -15 1715 108 8 42 chr3 128460808 128460964 -89576194 - AluSx SINE Alu -21 291 146 2309 99 3 0 chr3 128460964 128461258 -89575900 - AluSx SINE Alu -17 295 1 1715 108 8 42 chr3 128461258 128461361 -89575797 - AluSx SINE Alu -166 146 41 1971 137 0 0 chr3 128461361 128461677 -89575481 - AluSx SINE Alu 0 320 5 864 122 0 8 chr3 128461683 128461814 -89575344 - FLAM_C SINE Alu -3 130 1 480 259 48 27 chr3 128461865 128462012 -89575146 - MIR3 SINE MIR -17 191 42 1231 190 35 9 chr3 128462148 128462380 -89574778 + MER8 DNA MER2_type 1 238 -1 948 181 16 32 chr3 128462461 128462649 -89574509 - AluJb SINE Alu -12 300 116 1289 134 6 0 chr3 128463122 128463301 -89573857 + AluSx SINE Alu 1 180 -132 289 318 194 6 chr3 128464087 128464411 -89572747 + L2 LINE L2 2593 2977 -337 537 235 17 0 chr3 128464412 128464531 -89572627 - L2 LINE L2 0 3313 3193 521 252 73 48 chr3 128464553 128464759 -89572399 + L2 LINE L2 3025 3235 -37 234 208 75 0 chr3 128467427 128467480 -89569678 - L2 LINE L2 -1 3271 3215 2383 48 45 7 chr3 128467554 128467846 -89569312 + AluY SINE Alu 1 303 -8 192 241 27 125 chr3 128467887 128467999 -89569159 - MIR SINE MIR -78 130 30 2538 93 12 77 chr3 128468223 128468651 -89568507 - LTR10A LTR ERV1 -54 555 156 1180 173 73 23 chr3 128468766 128468986 -89568172 - AluJo SINE Alu -81 231 1 1854 156 7 10 chr3 128469019 128469321 -89567837 + AluJo SINE Alu 1 301 -11 2262 91 3 0 chr3 128469521 128469807 -89567351 + AluSg SINE Alu 1 287 -23 2248 89 7 0 chr3 128469910 128470219 -89566939 + AluSp SINE Alu 2 312 0 238 259 89 18 chr3 128470219 128470331 -89566827 + MIR SINE MIR 140 259 -3 1396 141 12 60 chr3 128470331 128470392 -89566766 - MER47A DNA MER2_type -2086 237 175 2423 79 3 0 chr3 128470392 128470696 -89566462 - AluY SINE Alu -6 305 1 1396 141 12 60 chr3 128470696 128470882 -89566276 - MER47A DNA MER2_type -2148 175 2 306 264 85 0 chr3 128470894 128471000 -89566158 + MIR SINE MIR 68 182 -80 2416 85 7 0 chr3 128471272 128471577 -89565581 - AluSp SINE Alu -6 307 1 1973 161 0 13 chr3 128471579 128471890 -89565268 - AluJo SINE Alu -5 307 1 1920 150 10 18 chr3 128471947 128472377 -89564781 + L1M4 LINE L1 5188 5608 -566 1118 220 0 20 chr3 128472384 128472629 -89564529 + AluJo SINE Alu 21 260 -52 2002 100 6 41 chr3 128474251 128474571 -89562587 + AluY SINE Alu 1 309 -2 233 333 38 11 chr3 128474592 128474701 -89562457 - MIR SINE MIR -39 169 56 503 212 15 51 chr3 128474761 128474898 -89562260 + AluJo SINE Alu 5 136 -176 230 341 97 35 chr3 128474947 128475173 -89561985 - L2 LINE L2 -119 3153 2914 2353 87 0 19 chr3 128475181 128475492 -89561666 + AluY SINE Alu 1 305 -6 2220 120 0 10 chr3 128475979 128476114 -89561044 + AluSq SINE Alu 1 136 -177 2172 115 3 13 chr3 128476114 128476427 -89560731 + AluSg SINE Alu 1 310 0 2220 120 0 10 chr3 128476427 128476591 -89560567 + AluSq SINE Alu 136 297 -16 2111 143 0 9 chr3 128476592 128476907 -89560251 + AluSx SINE Alu 1 312 0 21 36 0 0 chr3 128476910 128476938 -89560220 + AT_rich Low_complexity Low_complexity 1 28 0 1608 154 44 18 chr3 128477089 128477362 -89559796 - AluJo SINE Alu -32 280 1 838 185 68 12 chr3 128477542 128477704 -89559454 + FRAM SINE Alu 4 174 -2 663 174 58 43 chr3 128477709 128477847 -89559311 + AluJo SINE Alu 2 141 -171 2214 74 3 20 chr3 128477847 128478143 -89559015 + AluSx SINE Alu 1 291 -21 256 283 104 9 chr3 128478143 128478249 -89558909 + MIR SINE MIR 26 141 -67 188 284 118 29 chr3 128478315 128478417 -89558741 + L2 LINE L2 3203 3313 0 903 127 127 25 chr3 128478443 128478600 -89558558 - FRAM SINE Alu -7 169 1 222 37 0 0 chr3 128478600 128478627 -89558531 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2188 100 11 0 chr3 128478627 128478908 -89558250 - AluSq SINE Alu -29 284 1 346 269 102 0 chr3 128479306 128479414 -89557744 + MLT1H LTR MaLR 114 232 -317 * 476 201 57 33 chr3 128479410 128479535 -89557623 - MLT1H1 LTR MaLR -443 112 1 1411 238 79 2 chr3 128479556 128479960 -89557198 - L1MC4 LINE L1 -332 7710 7276 1044 184 85 124 chr3 128480147 128480501 -89556657 + MER57A LTR ERV1 64 403 0 1988 179 75 36 chr3 128480533 128480975 -89556183 + LTR2B LTR ERV1 32 490 0 281 333 131 13 chr3 128481134 128481287 -89555871 + LTR2B-int LTR ERV1 165 335 -7202 340 277 18 18 chr3 128481960 128482072 -89555086 + LTR2B-int LTR ERV1 876 987 -4136 809 199 23 6 chr3 128482073 128482244 -89554914 + MER34C LTR ERV1 155 328 -257 2311 110 7 0 chr3 128482317 128482627 -89554531 - AluSq SINE Alu 0 313 2 706 158 78 81 chr3 128482777 128483037 -89554121 + MER31-int LTR ERV1 1027 2986 -3345 47 61 0 0 chr3 128483037 128483119 -89554039 + AT_rich Low_complexity Low_complexity 1 82 0 380 107 0 0 chr3 128483138 128483194 -89553964 + MER31-int LTR ERV1 1254 1309 -3627 * 539 223 88 47 chr3 128483184 128483377 -89553781 + MER31-int LTR ERV1 1467 1667 -3269 266 174 184 41 chr3 128483292 128483390 -89553768 + LTR57-int LTR ERVL 1306 1417 -3926 * 542 248 51 23 chr3 128483432 128483646 -89553512 + MER31-int LTR ERV1 1739 1958 -2978 2939 200 91 102 chr3 128483669 128484539 -89552619 + MER31-int LTR ERV1 2063 2941 -4005 785 165 0 0 chr3 128484539 128484660 -89552498 - FLAM_C SINE Alu -11 122 2 2939 200 91 102 chr3 128484660 128485236 -89551922 + MER31-int LTR ERV1 2941 3522 -3424 2928 88 0 3 chr3 128485236 128485612 -89551546 + THE1C LTR MaLR 1 375 0 2939 200 91 102 chr3 128485612 128485722 -89551436 + MER31-int LTR ERV1 3522 5448 -1498 15095 186 31 14 chr3 128485730 128490139 -89547019 - L1PB2 LINE L1 -3 6864 3214 2106 143 0 0 chr3 128490139 128490439 -89546719 - AluSq SINE Alu -13 300 1 15095 186 31 14 chr3 128490439 128493570 -89543588 - L1PB2 LINE L1 -3653 3214 137 30672 115 12 33 chr3 128493671 128499560 -89537598 - L1P3 LINE L1 -463 6024 115 253 292 158 23 chr3 128499554 128499725 -89537433 - L1MC/D LINE L1 -2026 5782 5589 * 23 0 0 0 chr3 128499725 128499748 -89537410 + AT_rich Low_complexity Low_complexity 1 23 0 268 80 0 40 chr3 128499748 128499798 -89537360 - L1MA3 LINE L1 0 6305 6258 2283 101 0 17 chr3 128499806 128500104 -89537054 - AluSq SINE Alu -20 293 1 427 281 94 49 chr3 128500120 128500408 -89536750 - L1MC/D LINE L1 -2211 5597 5297 571 250 33 0 chr3 128500433 128500617 -89536541 - L1MC/D LINE L1 -1801 4345 4156 483 276 47 6 chr3 128500629 128500799 -89536359 - L1MC/D LINE L1 -2251 3895 3719 * 2267 217 29 7 chr3 128500797 128501350 -89535808 - L1MEc LINE L1 -2023 4192 3628 874 236 0 0 chr3 128501352 128501530 -89535628 - FRAM SINE Alu -6 170 1 4517 223 44 27 chr3 128501530 128501671 -89535487 - L1MEc LINE L1 -2581 3634 3497 2367 108 0 19 chr3 128501671 128501987 -89535171 - AluSx SINE Alu -2 310 1 4517 223 44 27 chr3 128501987 128502238 -89534920 - L1MEc LINE L1 -2718 3497 3252 1902 184 0 0 chr3 128502238 128502548 -89534610 - AluJb SINE Alu -2 310 1 4517 223 44 27 chr3 128502548 128503763 -89533395 - L1MEc LINE L1 -2963 3252 2047 468 200 35 124 chr3 128503765 128503820 -89533338 + Tigger1 DNA MER2_type 2 60 -2358 2254 86 0 27 chr3 128503820 128504121 -89533037 - AluSx SINE Alu -13 299 7 468 200 35 124 chr3 128504121 128504210 -89532948 + Tigger1 DNA MER2_type 60 133 -2285 1392 125 5 9 chr3 128504221 128504437 -89532721 + Tigger1 DNA MER2_type 2204 2418 0 496 189 7 98 chr3 128504437 128504580 -89532578 - L1MEc LINE L1 -4349 2047 1918 * 3195 253 56 30 chr3 128504578 128504904 -89532254 - L1MEc LINE L1 -5352 1044 728 2163 76 94 0 chr3 128504904 128505179 -89531979 - AluY SINE Alu -10 301 1 3195 253 56 30 chr3 128505179 128505837 -89531321 - L1MEc LINE L1 -5668 728 35 643 233 64 83 chr3 128505889 128506202 -89530956 - L1MC4 LINE L1 0 8042 7736 596 243 132 32 chr3 128506224 128506413 -89530745 - MLT1G LTR MaLR -8 582 375 324 274 0 24 chr3 128506466 128506550 -89530608 - MLT1G LTR MaLR -288 267 186 831 269 57 0 chr3 128506551 128506778 -89530380 + L1MC4 LINE L1 7382 7621 -421 1820 187 13 40 chr3 128506778 128507157 -89530001 - MLT1B LTR MaLR 0 390 22 2557 108 26 115 chr3 128507446 128508019 -89529139 + L1PA10 LINE L1 5645 6166 -2 1961 141 7 3 chr3 128508761 128509059 -89528099 - AluSx SINE Alu -13 299 1 387 0 0 0 chr3 128509641 128509684 -89527474 + (TG)n Simple_repeat Simple_repeat 1 43 0 186 107 0 0 chr3 128510222 128510250 -89526908 + L2 LINE L2 2730 2757 -557 485 361 97 6 chr3 128510333 128510693 -89526465 + L2 LINE L2 2873 3265 -7 2594 145 32 34 chr3 128511234 128511702 -89525456 - MLT1C LTR MaLR 0 467 1 1949 149 3 0 chr3 128511911 128512200 -89524958 + AluSx SINE Alu 1 290 -22 234 264 0 0 chr3 128512304 128512357 -89524801 + L1MC4 LINE L1 6637 6689 -1353 2229 89 0 0 chr3 128512852 128513132 -89524026 + AluSx SINE Alu 1 280 -32 1037 61 49 0 chr3 128513133 128513296 -89523862 + GA-rich Low_complexity Low_complexity 2 172 0 623 266 54 5 chr3 128513601 128513785 -89523373 - MIR SINE MIR -45 217 25 1804 167 148 13 chr3 128516046 128516423 -89520735 + MSTA LTR MaLR 1 428 0 10253 119 11 34 chr3 128516425 128518041 -89519117 + MSTA-int LTR MaLR 3 1580 0 1923 141 136 16 chr3 128518041 128518423 -89518735 + MSTA LTR MaLR 1 428 0 15721 197 19 88 chr3 128518454 128524584 -89512574 - L1 LINE L1 -772 6016 344 1558 209 27 3 chr3 128524584 128524881 -89512277 + AluJb SINE Alu 1 304 -8 15721 197 19 88 chr3 128524881 128525191 -89511967 - L1 LINE L1 -6444 344 14 242 263 40 0 chr3 128525566 128525642 -89511516 + GA-rich Low_complexity Low_complexity 4 82 0 24 53 0 0 chr3 128526283 128526321 -89510837 + AT_rich Low_complexity Low_complexity 1 38 0 615 243 29 0 chr3 128526328 128526461 -89510697 + L1MD3 LINE L1 7804 7945 -50 2466 45 3 23 chr3 128526461 128526770 -89510388 - AluY SINE Alu -8 303 1 615 243 29 0 chr3 128526770 128526809 -89510349 + L1MD3 LINE L1 7945 7981 -14 996 247 41 47 chr3 128527515 128527855 -89509303 - MER102b DNA MER1_type -3 338 1 205 295 16 0 chr3 128531377 128531449 -89505709 - MIR SINE MIR -74 134 75 324 0 0 0 chr3 128532482 128532518 -89504640 + (CA)n Simple_repeat Simple_repeat 2 37 0 329 232 20 40 chr3 128533692 128533791 -89503367 + MER5B DNA MER1_type 4 100 -78 595 250 132 5 chr3 128534646 128534850 -89502308 + MIR SINE MIR 32 261 -1 2212 99 19 25 chr3 128535119 128535433 -89501725 + AluSx SINE Alu 1 312 0 269 282 185 15 chr3 128537124 128537319 -89499839 - MIR SINE MIR -16 246 19 2141 116 0 3 chr3 128538354 128538665 -89498493 - AluSg SINE Alu 0 310 1 1048 144 0 0 chr3 128539313 128539515 -89497643 + AluSg/x SINE Alu 130 331 0 372 239 64 18 chr3 128539600 128539709 -89497449 - MIR SINE MIR -93 169 56 31 0 0 0 chr3 128540722 128540753 -89496405 + AT_rich Low_complexity Low_complexity 1 31 0 2169 109 3 10 chr3 128540844 128541137 -89496021 + AluSx SINE Alu 1 291 -21 311 270 71 32 chr3 128541258 128541384 -89495774 - MER5A DNA MER1_type -58 131 1 771 254 0 39 chr3 128541675 128541880 -89495278 + MIR SINE MIR 4 200 -62 329 314 108 14 chr3 128542527 128542750 -89494408 + L3 LINE CR1 966 1209 -368 2164 183 57 35 chr3 128542827 128543320 -89493838 - MLT1D LTR MaLR 0 505 2 188 182 0 0 chr3 128543360 128543393 -89493765 + L3b LINE CR1 1537 1569 -14 1926 154 0 13 chr3 128543408 128543714 -89493444 - AluJb SINE Alu -10 302 1 1886 160 7 17 chr3 128544045 128544338 -89492820 + AluJo SINE Alu 1 290 -22 483 125 0 80 chr3 128544338 128544426 -89492732 + Charlie3 DNA MER1_type 2622 2702 -8 330 284 53 0 chr3 128544568 128544663 -89492495 - MIR SINE MIR -81 127 28 1984 133 50 12 chr3 128544990 128545313 -89491845 + MER1B DNA MER1_type 3 337 0 1162 163 64 33 chr3 128545830 128546156 -89491002 - MLT1D LTR MaLR -126 379 1 23 33 0 0 chr3 128547150 128547180 -89489978 + AT_rich Low_complexity Low_complexity 1 30 0 836 179 144 0 chr3 128547303 128547476 -89489682 + MER3 DNA MER1_type 12 209 0 516 280 13 116 chr3 128548672 128549068 -89488090 + L2 LINE L2 2871 3225 -47 242 313 80 9 chr3 128549256 128549368 -89487790 + MIR3 SINE MIR 43 162 -46 388 227 74 85 chr3 128550679 128550855 -89486303 + MIR SINE MIR 48 221 -41 2561 62 3 0 chr3 128551743 128552048 -89485110 - AluY SINE Alu -5 306 1 285 242 0 15 chr3 128552238 128552304 -89484854 + GA-rich Low_complexity Low_complexity 4 68 0 215 216 48 136 chr3 128552375 128552500 -89484658 + MIR3 SINE MIR 84 154 -54 1171 168 0 34 chr3 128552635 128552843 -89484315 + AluJo SINE Alu 84 284 -28 367 213 13 13 chr3 128553637 128553712 -89483446 - MSTA LTR MaLR -353 75 1 2003 116 113 6 chr3 128555349 128555678 -89481480 + THE1B LTR MaLR 1 364 0 377 65 13 39 chr3 128555826 128555903 -89481255 + (TA)n Simple_repeat Simple_repeat 2 76 0 623 261 120 64 chr3 128555934 128556213 -89480945 - L1ME4a LINE L1 -19 6102 5785 2169 117 0 13 chr3 128556213 128556513 -89480645 - AluSx SINE Alu -16 296 1 623 261 120 64 chr3 128556513 128556700 -89480458 - L1ME4a LINE L1 -336 5785 5610 303 223 103 91 chr3 128556701 128556876 -89480282 - MLT1K LTR MaLR -2 586 410 213 196 0 0 chr3 128558021 128558067 -89479091 + T-rich Low_complexity Low_complexity 1 46 0 214 215 200 0 chr3 128558262 128558327 -89478831 + MIR SINE MIR 73 150 -112 664 201 14 28 chr3 128560317 128560461 -89476697 + MER5B DNA MER1_type 1 142 -36 2405 96 0 3 chr3 128560461 128560774 -89476384 + AluSq SINE Alu 1 312 -1 1851 163 3 10 chr3 128561409 128561715 -89475443 + AluJb SINE Alu 2 305 -7 2356 92 0 6 chr3 128561813 128562127 -89475031 + AluSx SINE Alu 1 312 0 585 220 54 104 chr3 128562128 128562387 -89474771 + L2 LINE L2 3067 3312 -1 585 323 76 25 chr3 128562896 128563172 -89473986 - L3 LINE CR1 -91 1486 1197 1542 111 0 5 chr3 128563184 128563414 -89473744 - AluSg/x SINE Alu 0 307 79 262 281 172 16 chr3 128563414 128563530 -89473628 + MIR SINE MIR 109 249 -13 347 296 56 8 chr3 128565151 128565276 -89471882 + MIR3 SINE MIR 74 204 -4 21 36 0 0 chr3 128565984 128566012 -89471146 + AT_rich Low_complexity Low_complexity 1 28 0 1045 312 78 25 chr3 128566339 128566753 -89470405 - L3 LINE CR1 -20 1557 1166 2239 107 3 7 chr3 128566753 128567052 -89470106 - AluSq SINE Alu -15 298 1 1045 312 78 25 chr3 128567052 128567136 -89470022 - L3 LINE CR1 -411 1166 1088 426 39 0 0 chr3 128567136 128567188 -89469970 + (TC)n Simple_repeat Simple_repeat 1 52 0 393 75 0 0 chr3 128567187 128567240 -89469918 + (CA)n Simple_repeat Simple_repeat 1 53 0 * 1045 312 78 25 chr3 128567188 128567333 -89469825 - L3 LINE CR1 -489 1088 934 550 279 99 22 chr3 128567414 128567636 -89469522 - MIR SINE MIR 0 262 24 336 261 50 67 chr3 128568216 128568335 -89468823 - MIR3 SINE MIR -89 119 3 552 248 24 0 chr3 128569090 128569215 -89467943 + MER94 DNA DNA 1 128 -6 805 232 118 19 chr3 128569258 128569469 -89467689 - MIR SINE MIR -11 251 20 478 311 77 20 chr3 128569744 128569940 -89467218 + MIR SINE MIR 35 241 -21 2061 125 0 7 chr3 128570441 128570744 -89466414 + AluSq SINE Alu 1 301 -12 865 227 69 0 chr3 128570985 128571188 -89465970 + MER97b DNA MER1_type? 22 238 -815 2734 171 33 48 chr3 128571188 128571655 -89465503 - L1MB8 LINE L1 -1 6177 5719 5121 128 49 43 chr3 128571655 128572476 -89464682 - LTR12 LTR ERV1 0 826 1 2734 171 33 48 chr3 128572476 128572609 -89464549 - L1MB8 LINE L1 -459 5719 5586 308 135 0 54 chr3 128572611 128572685 -89464473 + MER97b DNA MER1_type? 230 299 -754 398 156 26 0 chr3 128572687 128572764 -89464394 + MER97c DNA MER1_type? 263 341 -749 1769 195 53 106 chr3 128572841 128573409 -89463749 + MER97a DNA MER1_type? 357 894 0 2625 227 38 31 chr3 128573865 128574770 -89462388 + L1MC/D LINE L1 4539 5444 -743 405 297 54 14 chr3 128575097 128575245 -89461913 + MIR SINE MIR 69 222 -40 211 192 77 0 chr3 128575580 128575632 -89461526 + L2 LINE L2 3253 3308 -5 913 189 16 21 chr3 128575893 128576084 -89461074 - MIR SINE MIR 0 262 73 823 96 0 0 chr3 128576387 128576491 -89460667 - U6 snRNA snRNA -3 104 1 2283 103 3 0 chr3 128577218 128577519 -89459639 + AluSp SINE Alu 1 302 -11 236 191 0 0 chr3 128577715 128577762 -89459396 - L2 LINE L2 0 3313 3267 683 297 57 9 chr3 128577781 128578010 -89459148 + MIR SINE MIR 2 241 -21 936 168 43 22 chr3 128578631 128578816 -89458342 + MER53 DNA DNA 1 189 0 245 268 122 0 chr3 128578985 128579067 -89458091 - L2 LINE L2 -38 3234 3143 216 200 133 0 chr3 128579118 128579178 -89457980 - MIR SINE MIR -10 252 185 847 177 7 14 chr3 128579206 128579353 -89457805 - AluJb SINE Alu -38 274 129 312 227 27 0 chr3 128579353 128579428 -89457730 - MIR SINE MIR -87 175 99 2415 80 0 10 chr3 128579525 128579836 -89457322 - AluY SINE Alu -3 308 1 302 259 25 0 chr3 128579975 128580056 -89457102 - MIR SINE MIR -165 97 15 274 308 38 75 chr3 128580093 128580226 -89456932 + L2 LINE L2 3144 3271 -1 193 299 65 65 chr3 128581067 128581174 -89455984 + L2 LINE L2 3190 3296 -17 412 297 27 27 chr3 128581362 128581510 -89455648 + MIR3 SINE MIR 54 201 -7 248 329 78 54 chr3 128581854 128582021 -89455137 - L2 LINE L2 -76 3196 3026 1322 181 31 0 chr3 128582532 128582759 -89454399 + MER1B DNA MER1_type 1 234 -63 1147 94 6 6 chr3 128582794 128582954 -89454204 + MER1B DNA MER1_type 174 333 0 2341 142 15 0 chr3 128583056 128583394 -89453764 + MER2 DNA MER2_type 2 344 0 197 323 39 79 chr3 128585546 128585673 -89451485 - MIR3 SINE MIR -15 193 72 445 301 78 6 chr3 128585954 128586120 -89451038 + MIR SINE MIR 20 197 -65 255 263 0 0 chr3 128587534 128587591 -89449567 - MIR SINE MIR -11 251 195 229 232 18 0 chr3 128587598 128587654 -89449504 + (CATAT)n Simple_repeat Simple_repeat 2 58 0 414 236 56 0 chr3 128587945 128588034 -89449124 + MIR SINE MIR 92 185 -77 2211 84 52 3 chr3 128588072 128588359 -89448799 + AluSg1 SINE Alu 1 301 -8 227 276 58 0 chr3 128588920 128589007 -89448151 - L1ME4a LINE L1 -38 6083 5992 385 62 31 0 chr3 128589009 128589074 -89448084 + (TG)n Simple_repeat Simple_repeat 1 67 0 1654 83 0 79 chr3 128589074 128589326 -89447832 - AluSq SINE Alu -31 282 51 26 0 0 0 chr3 128589395 128589421 -89447737 + AT_rich Low_complexity Low_complexity 1 26 0 501 268 33 13 chr3 128589681 128589834 -89447324 + MIR SINE MIR 20 175 -87 3853 50 2 0 chr3 128590035 128590479 -89446679 - L1PA6 LINE L1 0 6154 5710 197 338 12 50 chr3 128590508 128590588 -89446570 - L2 LINE L2 -74 3198 3122 182 311 0 33 chr3 128590585 128590646 -89446512 + L2 LINE L2 3209 3267 -5 * 1934 269 89 26 chr3 128590674 128590897 -89446261 - L1MC4a LINE L1 -1654 6154 5947 2420 107 0 0 chr3 128590897 128591207 -89445951 + AluSx SINE Alu 1 310 -2 1934 269 89 26 chr3 128591207 128591677 -89445481 - L1MC4a LINE L1 -1861 5947 5417 445 304 101 23 chr3 128591734 128591951 -89445207 - L2 LINE L2 -170 3102 2869 4744 157 51 4 chr3 128592525 128593549 -89443609 + L1MB7 LINE L1 5099 6163 -21 2175 116 0 31 chr3 128593550 128593869 -89443289 - AluSx SINE Alu -3 309 1 679 222 135 23 chr3 128594547 128594813 -89442345 - L1ME1 LINE L1 -96 6070 5775 380 252 157 50 chr3 128595731 128595890 -89441268 + MER5A DNA MER1_type 14 189 0 2213 111 0 20 chr3 128595918 128596224 -89440934 - AluSx SINE Alu -11 301 2 208 231 0 0 chr3 128596224 128596263 -89440895 - MER5A DNA MER1_type -4 185 147 2141 131 0 0 chr3 128597029 128597327 -89439831 + AluSq SINE Alu 1 298 -15 357 318 108 0 chr3 128597485 128597633 -89439525 - MIR SINE MIR -15 247 84 180 77 0 0 chr3 128597750 128597776 -89439382 + (GA)n Simple_repeat Simple_repeat 1 26 0 1066 155 28 11 chr3 128599070 128599251 -89437907 - MER5A DNA MER1_type 0 189 6 21 36 0 0 chr3 128599318 128599346 -89437812 + AT_rich Low_complexity Low_complexity 1 28 0 2064 117 23 3 chr3 128599354 128599654 -89437504 + AluSq SINE Alu 1 306 -7 37 0 0 0 chr3 128600471 128600508 -89436650 + AT_rich Low_complexity Low_complexity 1 37 0 27 73 0 0 chr3 128600736 128600791 -89436367 + AT_rich Low_complexity Low_complexity 1 55 0 2251 87 35 0 chr3 128601363 128601650 -89435508 + AluSq SINE Alu 1 297 -16 2374 92 3 0 chr3 128602120 128602424 -89434734 + AluY SINE Alu 1 305 -6 369 248 168 0 chr3 128603320 128603445 -89433713 - MIR3 SINE MIR -62 146 1 692 262 249 0 chr3 128603749 128604062 -89433096 - L2 LINE L2 -2139 1175 785 180 111 0 0 chr3 128604497 128604524 -89432634 + (A)n Simple_repeat Simple_repeat 1 27 0 284 241 36 54 chr3 128604964 128605076 -89432082 - HAL1b LINE L1 -5 1343 1234 355 266 66 66 chr3 128605261 128605487 -89431671 - L1ME1 LINE L1 -335 5786 5561 4464 96 77 21 chr3 128606193 128606824 -89430334 - L1PA13 LINE L1 -4 6159 5488 2420 83 3 0 chr3 128606824 128607126 -89430032 - AluSq SINE Alu -10 303 1 4464 96 77 21 chr3 128607126 128607153 -89430005 - L1PA13 LINE L1 -675 5488 5464 588 242 124 5 chr3 128607222 128607426 -89429732 - MIR SINE MIR -1 261 34 413 300 65 46 chr3 128607612 128607872 -89429286 + L1ME4a LINE L1 5099 5363 -783 21 0 0 0 chr3 128607918 128607939 -89429219 + AT_rich Low_complexity Low_complexity 1 21 0 2418 85 0 0 chr3 128608000 128608307 -89428851 - AluSx SINE Alu -5 307 1 814 310 37 9 chr3 128608307 128608633 -89428525 + L1ME4a LINE L1 5512 5846 -275 2260 147 44 53 chr3 128608637 128609029 -89428129 + MSTB LTR MaLR 1 390 -36 1903 160 137 21 chr3 128609029 128609410 -89427748 + MSTA LTR MaLR 4 428 0 2260 147 44 53 chr3 128609410 128609447 -89427711 + MSTB LTR MaLR 390 426 0 231 151 0 19 chr3 128609592 128609645 -89427513 + L1ME4a LINE L1 5996 6047 -74 1895 215 78 21 chr3 128609674 128610148 -89427010 - MLT1D LTR MaLR 0 505 5 726 236 6 45 chr3 128610380 128610558 -89426600 - FRAM SINE Alu -5 171 1 307 348 35 43 chr3 128610567 128610708 -89426450 + L2 LINE L2 3123 3262 -10 1771 103 0 0 chr3 128610750 128610974 -89426184 + AluSx SINE Alu 1 224 -88 569 307 57 45 chr3 128610979 128611243 -89425915 + L2 LINE L2 2830 3096 -217 494 106 15 0 chr3 128611250 128611316 -89425842 + AluSx SINE Alu 227 293 -16 490 229 48 0 chr3 128611404 128611509 -89425649 - MER81 DNA DNA -4 110 1 1328 300 48 32 chr3 128611667 128612164 -89424994 - L2 LINE L2 -5 3308 2804 350 226 126 69 chr3 128613686 128613845 -89423313 - L2 LINE L2 -29 3284 3117 568 142 26 18 chr3 128614266 128614379 -89422779 + L1ME3 LINE L1 6048 6161 -1 625 212 17 0 chr3 128614913 128615093 -89422065 - FLAM_A SINE Alu 0 182 1 400 290 20 102 chr3 128616030 128616255 -89420903 + L3 LINE CR1 1341 1544 -33 2490 50 3 0 chr3 128616255 128616552 -89420606 + AluY SINE Alu 7 304 -7 400 290 20 102 chr3 128616552 128616581 -89420577 + L3 LINE CR1 1544 1574 -3 942 206 22 0 chr3 128618431 128618615 -89418543 - MER5A DNA MER1_type -1 188 1 2499 171 36 33 chr3 128618809 128618939 -89418219 - L1MB7 LINE L1 -30 6154 6026 2338 152 34 13 chr3 128618939 128619327 -89417831 - MSTD LTR MaLR 0 396 1 2499 171 36 33 chr3 128619327 128619471 -89417687 - L1MB7 LINE L1 -158 6026 5884 2197 114 3 10 chr3 128619471 128619770 -89417388 - AluSx SINE Alu -15 297 1 2499 171 36 33 chr3 128619770 128620015 -89417143 - L1MB7 LINE L1 -300 5884 5632 435 303 71 22 chr3 128620144 128620384 -89416774 - MIR SINE MIR -10 252 3 2033 163 22 19 chr3 128620783 128621082 -89416076 - MLT1A1 LTR MaLR -2 363 61 7971 69 6 4 chr3 128621082 128622087 -89415071 - LTR13 LTR ERVK 0 1007 1 2033 163 22 19 chr3 128622087 128622149 -89415009 - MLT1A1 LTR MaLR -304 61 1 218 264 19 0 chr3 128622154 128622207 -89414951 - MIR3 SINE MIR -47 161 108 918 285 83 25 chr3 128622233 128622640 -89414518 - L2 LINE L2 -12 3301 2871 265 145 32 0 chr3 128622814 128622876 -89414282 + (TA)n Simple_repeat Simple_repeat 2 65 0 767 294 79 36 chr3 128622917 128623411 -89413747 - L2 LINE L2 -476 2838 2324 2171 114 0 13 chr3 128623417 128623724 -89413434 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr3 128623983 128624004 -89413154 + AT_rich Low_complexity Low_complexity 1 21 0 1007 189 9 66 chr3 128624405 128624633 -89412525 - MER20 DNA MER1_type -4 215 1 227 140 0 80 chr3 128625011 128625061 -89412097 + L2 LINE L2 3268 3313 0 2057 133 0 0 chr3 128626710 128627013 -89410145 + AluJb SINE Alu 3 305 0 618 182 8 8 chr3 128627512 128627633 -89409525 + FLAM_C SINE Alu 11 131 -12 2322 211 54 12 chr3 128628270 128628787 -89408371 - L1MC4a LINE L1 -6 7802 7264 508 183 226 0 chr3 128628789 128628904 -89408254 - L1MC4a LINE L1 -657 7151 7011 846 163 0 0 chr3 128629214 128629343 -89407815 + FLAM_C SINE Alu 1 129 -4 394 340 65 41 chr3 128629821 128630115 -89407043 - MLT1K LTR MaLR -6 582 282 439 252 9 17 chr3 128630788 128630903 -89406255 - MER5B DNA MER1_type -64 114 1 450 266 76 93 chr3 128632415 128632560 -89404598 - MIR SINE MIR 0 262 121 1602 190 0 4 chr3 128632560 128632834 -89404324 + AluJo SINE Alu 35 307 -5 450 266 76 93 chr3 128632834 128632925 -89404233 - MIR SINE MIR -141 121 30 209 176 0 0 chr3 128634269 128634303 -89402855 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 1738 87 0 140 chr3 128634691 128634991 -89402167 + AluSx SINE Alu 1 258 -54 21 0 0 0 chr3 128634995 128635016 -89402142 + AT_rich Low_complexity Low_complexity 1 21 0 185 294 110 37 chr3 128635208 128635317 -89401841 + MIR SINE MIR 113 229 -33 2357 94 0 0 chr3 128635432 128635729 -89401429 + AluSx SINE Alu 3 299 -13 1013 227 31 27 chr3 128637013 128637273 -89399885 + MIR SINE MIR 2 262 0 488 237 51 51 chr3 128637427 128637583 -89399575 - MLT1K LTR MaLR -277 311 156 399 277 146 18 chr3 128637743 128637963 -89399195 - MIR SINE MIR -12 250 3 285 328 61 23 chr3 128638187 128638318 -89398840 - L2 LINE L2 -183 3089 2954 226 358 118 5 chr3 128638341 128638545 -89398613 + MIR SINE MIR 29 255 -7 784 255 131 45 chr3 128639778 128640244 -89396914 - MLT1J LTR MaLR -2 509 4 889 237 65 4 chr3 128640854 128641095 -89396063 + L1MC4a LINE L1 5560 5804 -366 902 319 80 16 chr3 128641214 128641578 -89395580 + LTR16C LTR ERVL 97 483 -8 2260 122 0 3 chr3 128641605 128641917 -89395241 + AluSx SINE Alu 2 312 0 500 312 21 25 chr3 128641931 128642168 -89394990 + L1MC4a LINE L1 5812 6047 -1761 1563 152 21 139 chr3 128642386 128642775 -89394383 - MER2 DNA MER2_type 0 345 3 268 284 28 28 chr3 128643024 128643133 -89394025 - MIR SINE MIR -5 257 149 197 255 0 0 chr3 128643211 128643258 -89393900 - L2 LINE L2 -16 3297 3251 255 252 41 89 chr3 128643500 128643573 -89393585 + MIR3 SINE MIR 85 151 -57 1243 118 8 88 chr3 128643573 128643811 -89393347 - MER20 DNA MER1_type 0 219 1 255 252 41 89 chr3 128643811 128643860 -89393298 + MIR3 SINE MIR 151 201 -7 460 288 128 62 chr3 128645272 128646083 -89391075 - L2 LINE L2 0 3272 2385 209 330 127 0 chr3 128646143 128646261 -89390897 - L2 LINE L2 -37 3235 3103 267 246 63 56 chr3 128646331 128646457 -89390701 - L2 LINE L2 0 3272 3146 2285 103 13 10 chr3 128646649 128646961 -89390197 + AluSq SINE Alu 1 313 0 330 199 48 62 chr3 128647135 128647281 -89389877 + L1ME4a LINE L1 5978 6121 0 2041 120 21 0 chr3 128647281 128647564 -89389594 + AluSx SINE Alu 1 289 -23 2265 115 0 13 chr3 128647574 128647886 -89389272 + AluSg SINE Alu 1 308 -2 412 290 127 23 chr3 128648026 128648247 -89388911 + MIR SINE MIR 1 244 -18 934 119 8 0 chr3 128652002 128652128 -89385030 + FLAM_C SINE Alu 1 127 -16 260 120 20 0 chr3 128652560 128652610 -89384548 + CT-rich Low_complexity Low_complexity 1 51 0 197 355 103 28 chr3 128656226 128656508 -89380650 + L2 LINE L2 225 527 -2787 285 336 174 13 chr3 128657333 128657862 -89379296 + L2 LINE L2 1437 2050 -1264 2085 124 0 0 chr3 128657883 128658219 -89378939 + AluSx SINE Alu 1 336 0 287 184 0 0 chr3 128658219 128658268 -89378890 - L1MB5 LINE L1 -50 6124 6076 303 300 0 0 chr3 128658541 128658621 -89378537 + L2 LINE L2 3198 3277 -36 2174 91 26 26 chr3 128659583 128659892 -89377266 + AluSg SINE Alu 1 309 -1 189 273 63 98 chr3 128659908 128660051 -89377107 - MER5A DNA MER1_type -45 144 7 282 180 0 0 chr3 128660659 128660709 -89376449 + MER94 DNA DNA 78 127 -7 839 208 29 23 chr3 128660887 128661060 -89376098 + Tigger7 DNA MER2_type 2 175 -558 244 135 0 0 chr3 128661869 128661906 -89375252 - MER68 LTR ERV1 -525 37 1 * 695 189 92 66 chr3 128661906 128662087 -89375071 - MER68 LTR ERV1 -340 222 37 1120 158 6 6 chr3 128662087 128662258 -89374900 + MER68 LTR ERV1 176 346 -216 2348 115 0 0 chr3 128662287 128662600 -89374558 - AluSq SINE Alu 0 313 1 294 265 102 17 chr3 128662615 128662908 -89374250 - L2 LINE L2 -853 2461 2078 26 0 0 0 chr3 128663413 128663439 -89373719 + AT_rich Low_complexity Low_complexity 1 26 0 466 195 270 27 chr3 128663605 128663790 -89373368 - MLT1J1 LTR MaLR -140 306 77 249 164 55 55 chr3 128663759 128663814 -89373344 - MLT1J2 LTR MaLR -342 108 54 * 2464 78 0 0 chr3 128663943 128664239 -89372919 + AluY SINE Alu 1 296 -15 1436 179 8 8 chr3 128664306 128664546 -89372612 + AluJo SINE Alu 1 240 -72 194 216 81 27 chr3 128665111 128665185 -89371973 - MIR SINE MIR -56 206 129 312 346 37 27 chr3 128665555 128665743 -89371415 - LTR67 LTR ERVL -269 288 99 282 220 68 51 chr3 128665918 128666036 -89371122 + L3 LINE CR1 1389 1508 -69 770 241 47 11 chr3 128666427 128666618 -89370540 + MLT1A1 LTR MaLR 168 365 0 2341 111 0 0 chr3 128666641 128666947 -89370211 + AluSq SINE Alu 1 306 -7 1900 156 26 0 chr3 128667219 128667521 -89369637 + AluJb SINE Alu 1 310 -2 1646 94 5 5 chr3 128667653 128667865 -89369293 + AluSx SINE Alu 1 212 -100 862 110 34 0 chr3 128667865 128667983 -89369175 + AluSp/q SINE Alu 161 282 -31 512 230 125 0 chr3 128668675 128668827 -89368331 - L1MC4a LINE L1 -1904 5904 5734 2083 129 3 19 chr3 128668901 128669212 -89367946 + AluSx SINE Alu 1 306 -6 2533 80 3 0 chr3 128669910 128670222 -89366936 + AluSp SINE Alu 1 313 0 198 0 0 0 chr3 128671941 128671963 -89365195 + (C)n Simple_repeat Simple_repeat 1 22 0 25 0 0 0 chr3 128672583 128672608 -89364550 + GC_rich Low_complexity Low_complexity 1 25 0 396 246 93 8 chr3 128672898 128673016 -89364142 + L2 LINE L2 3185 3312 -1 267 304 69 10 chr3 128673164 128673266 -89363892 + MARNA DNA Mariner 149 256 -330 225 241 107 54 chr3 128673330 128673442 -89363716 + MARNA DNA Mariner 415 532 -54 26 30 0 0 chr3 128674320 128674353 -89362805 + AT_rich Low_complexity Low_complexity 1 33 0 483 161 0 12 chr3 128675003 128675084 -89362074 - MER58 DNA MER1_type -23 2397 2318 248 86 0 0 chr3 128675081 128675116 -89362042 - MER58 DNA MER1_type -2321 99 65 * 390 146 37 0 chr3 128675725 128675807 -89361351 - L1MA7 LINE L1 -130 6161 6077 1765 166 47 0 chr3 128675862 128676041 -89361117 - AluJo SINE Alu -2 310 110 396 40 0 0 chr3 128676041 128676091 -89361067 + (TG)n Simple_repeat Simple_repeat 1 50 0 1765 166 47 0 chr3 128676091 128676207 -89360951 - AluJo SINE Alu -202 110 1 2187 112 7 3 chr3 128676219 128676515 -89360643 - AluSx SINE Alu -15 297 1 683 239 85 60 chr3 128676515 128676846 -89360312 + L1MC4a LINE L1 5584 5922 -1886 186 43 0 0 chr3 128677174 128677197 -89359961 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 2217 103 0 10 chr3 128677202 128677493 -89359665 - AluSq SINE Alu -25 288 1 21 82 0 0 chr3 128677599 128677648 -89359510 + AT_rich Low_complexity Low_complexity 1 49 0 1872 166 7 0 chr3 128677660 128677955 -89359203 - AluSx SINE Alu -15 297 1 625 212 17 0 chr3 128678690 128678870 -89358288 - FLAM_A SINE Alu 0 182 1 365 323 32 51 chr3 128679807 128680024 -89357134 + L3 LINE CR1 1341 1553 -24 2312 97 0 16 chr3 128680026 128680336 -89356822 + AluSg SINE Alu 4 308 -2 2100 116 24 66 chr3 128680363 128680743 -89356415 - THE1B LTR MaLR 0 364 1 1333 89 6 0 chr3 128680743 128680923 -89356235 - THE1B-int LTR MaLR 0 1580 1400 204 40 0 0 chr3 128683649 128683674 -89353484 + (A)n Simple_repeat Simple_repeat 1 25 0 262 291 73 10 chr3 128685504 128685615 -89351543 - MIR SINE MIR -58 150 30 2341 108 0 0 chr3 128685653 128685950 -89351208 - AluSx SINE Alu -15 297 1 189 0 0 0 chr3 128685965 128685986 -89351172 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 2169 98 4 0 chr3 128685989 128686264 -89350894 - AluSp SINE Alu -37 276 1 394 157 97 157 chr3 128686683 128686817 -89350341 - AluJo SINE Alu -168 134 9 1048 186 43 30 chr3 128687907 128688373 -89348785 - L1MA7 LINE L1 -142 6149 5166 803 184 0 0 chr3 128688392 128688539 -89348619 - L1MA7 LINE L1 -951 5195 5049 2017 113 40 7 chr3 128688539 128688839 -89348319 - AluY SINE Alu -1 310 1 498 208 63 31 chr3 128688938 128689097 -89348061 - MER113 DNA MER1_type? -218 303 140 277 346 0 13 chr3 128689384 128689462 -89347696 + L2 LINE L2 3133 3209 -63 1650 96 0 22 chr3 128689559 128689788 -89347370 + AluSx SINE Alu 1 224 -88 432 302 42 64 chr3 128689793 128690058 -89347100 + L2 LINE L2 2828 3086 -227 469 106 15 0 chr3 128690072 128690138 -89347020 + AluSx SINE Alu 228 294 -16 492 229 48 0 chr3 128690226 128690331 -89346827 - MER81 DNA DNA -4 110 1 1193 298 49 32 chr3 128690489 128690982 -89346176 - L2 LINE L2 -5 3308 2808 2489 68 3 0 chr3 128691646 128691941 -89345217 - AluSp SINE Alu -17 296 1 2076 146 0 7 chr3 128692125 128692434 -89344724 - AluJb SINE Alu -5 307 1 8903 138 48 16 chr3 128692873 128693108 -89344050 - Tigger1 DNA MER2_type -855 1563 1337 2287 100 0 7 chr3 128693108 128693409 -89343749 - AluSx SINE Alu -13 299 1 8903 138 48 16 chr3 128693409 128694688 -89342470 - Tigger1 DNA MER2_type -1081 1337 1 219 262 95 65 chr3 128694947 128695115 -89342043 + L2 LINE L2 2581 2753 -561 1982 160 0 0 chr3 128695402 128695695 -89341463 + AluJb SINE Alu 3 295 -17 2243 121 3 9 chr3 128696400 128696715 -89340443 + AluSq SINE Alu 1 313 0 330 199 48 62 chr3 128696889 128697035 -89340123 + L1ME4a LINE L1 5978 6121 0 2041 120 21 0 chr3 128697035 128697318 -89339840 + AluSx SINE Alu 1 289 -23 5742 112 73 59 chr3 128697461 128697915 -89339243 - Tigger3b DNA MER2_type -1945 1083 637 1866 131 85 0 chr3 128697915 128698198 -89338960 - AluSg SINE Alu -3 307 1 5742 112 73 59 chr3 128698198 128698811 -89338347 - Tigger3b DNA MER2_type -2391 637 1 763 149 0 45 chr3 128698811 128698941 -89338217 - MER47A DNA MER2_type -236 130 7 22 35 0 0 chr3 128699082 128699111 -89338047 + AT_rich Low_complexity Low_complexity 1 29 0 2258 106 7 0 chr3 128699532 128699833 -89337325 - AluSx SINE Alu -9 303 1 27 73 0 0 chr3 128700405 128700460 -89336698 + AT_rich Low_complexity Low_complexity 1 55 0 37 0 0 0 chr3 128700688 128700725 -89336433 + AT_rich Low_complexity Low_complexity 1 37 0 271 256 8 64 chr3 128701151 128701276 -89335882 - L1ME2 LINE L1 -65 6099 5982 1272 144 72 0 chr3 128701282 128701443 -89335715 - AluJb SINE Alu -19 293 114 189 0 0 0 chr3 128701443 128701464 -89335694 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1272 144 72 0 chr3 128701464 128701496 -89335662 - AluJb SINE Alu -198 114 86 1029 198 39 0 chr3 128701547 128701729 -89335429 + MER5A DNA MER1_type 1 189 0 886 145 8 0 chr3 128702302 128702433 -89334725 - Tigger1 DNA MER2_type 0 2418 2287 279 0 0 0 chr3 128702435 128702466 -89334692 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 26 30 0 0 chr3 128702660 128702693 -89334465 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr3 128703903 128703932 -89333226 + AT_rich Low_complexity Low_complexity 1 29 0 2403 79 7 0 chr3 128705047 128705350 -89331808 + AluSp SINE Alu 2 306 -7 236 122 0 0 chr3 128705472 128705513 -89331645 - LTR54 LTR ERV1 0 510 470 1563 98 0 0 chr3 128705514 128705707 -89331451 + AluSx SINE Alu 1 193 -119 713 138 0 17 chr3 128705866 128705982 -89331176 - Tigger2 DNA MER2_type -41 2677 2564 * 995 151 19 48 chr3 128705981 128706141 -89331017 - Tigger2 DNA MER2_type -2508 210 56 2157 116 13 13 chr3 128706141 128706451 -89330707 + AluSx SINE Alu 1 310 -2 995 151 19 48 chr3 128706451 128706496 -89330662 - Tigger2 DNA MER2_type -2662 56 11 597 286 97 43 chr3 128706668 128707038 -89330120 + L1ME LINE L1 5296 5685 -436 22 35 0 0 chr3 128707814 128707843 -89329315 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr3 128708463 128708488 -89328670 + AT_rich Low_complexity Low_complexity 1 25 0 235 204 45 0 chr3 128708817 128708861 -89328297 + MER5A DNA MER1_type 4 49 -140 2606 181 70 31 chr3 128708866 128709538 -89327620 + L1 LINE L1 1063 1760 -4521 1099 170 23 5 chr3 128709651 128710034 -89327124 - LTR54 LTR ERV1 -42 468 1 333 0 0 0 chr3 128710141 128710178 -89326980 + (CA)n Simple_repeat Simple_repeat 2 38 0 26 30 0 0 chr3 128712489 128712522 -89324636 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr3 128712547 128712571 -89324587 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr3 128712632 128712667 -89324491 + AT_rich Low_complexity Low_complexity 1 35 0 568 142 26 18 chr3 128712950 128713063 -89324095 - L1ME3 LINE L1 -1 6161 6048 5128 109 6 24 chr3 128713774 128714580 -89322578 - L1P LINE L1 -4873 1273 482 6515 159 29 14 chr3 128715455 128716709 -89320449 + L1 LINE L1 3595 4866 -1484 3534 149 13 29 chr3 128716811 128717441 -89319717 - THE1-int LTR MaLR -408 1172 553 220 248 257 18 chr3 128719536 128719649 -89317509 - MIR SINE MIR -107 155 16 211 231 0 0 chr3 128719654 128719693 -89317465 + T-rich Low_complexity Low_complexity 5 43 0 5846 75 1 3 chr3 128720654 128721418 -89315740 - L1P LINE L1 -4151 1995 1233 218 296 56 16 chr3 128722354 128722479 -89314679 - MIR SINE MIR -1 261 132 408 288 71 70 chr3 128722957 128723921 -89313237 - L1M4 LINE L1 -1944 4202 3193 618 255 74 82 chr3 128723933 128724325 -89312833 - L2 LINE L2 -36 3277 2889 215 406 0 0 chr3 128724664 128724792 -89312366 + G-rich Low_complexity Low_complexity 1 128 0 349 379 23 0 chr3 128725560 128725734 -89311424 + CT-rich Low_complexity Low_complexity 3 180 0 204 283 17 50 chr3 128725688 128725808 -89311350 + (TCCCG)n Simple_repeat Simple_repeat 4 119 0 * 6062 74 0 10 chr3 128726215 128727027 -89310131 + L1P LINE L1 4105 4908 -1238 255 351 0 35 chr3 128727042 128727310 -89309848 + C-rich Low_complexity Low_complexity 1 258 0 232 255 135 50 chr3 128727698 128727839 -89309319 - MIR SINE MIR -82 180 28 2164 100 3 3 chr3 128727875 128728164 -89308994 + AluSc SINE Alu 1 289 -20 24 0 0 0 chr3 128731215 128731239 -89305919 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr3 128731315 128731338 -89305820 + AT_rich Low_complexity Low_complexity 1 23 0 336 213 25 25 chr3 128733579 128733659 -89303499 - MIR SINE MIR -18 244 165 2285 74 11 7 chr3 128733712 128734024 -89303134 - AluSq SINE Alu 0 313 1 246 128 64 0 chr3 128734524 128734618 -89302540 + (TA)n Simple_repeat Simple_repeat 1 100 0 38 22 0 0 chr3 128735037 128735082 -89302076 + AT_rich Low_complexity Low_complexity 1 45 0 266 115 19 0 chr3 128735082 128735134 -89302024 + (TA)n Simple_repeat Simple_repeat 2 54 0 254 317 70 42 chr3 128735799 128735941 -89301217 + MIR SINE MIR 52 197 -65 286 303 22 14 chr3 128736207 128736412 -89300746 + L3 LINE CR1 956 1218 -359 1169 148 13 89 chr3 128737184 128737421 -89299737 + MER20 DNA MER1_type 1 219 0 189 0 0 0 chr3 128739363 128739384 -89297774 + (T)n Simple_repeat Simple_repeat 1 21 0 204 385 68 18 chr3 128739617 128739838 -89297320 + L2 LINE L2 3006 3237 -35 192 125 0 0 chr3 128739844 128739876 -89297282 + (TGGA)n Simple_repeat Simple_repeat 1 32 0 25 31 0 0 chr3 128740040 128740072 -89297086 + GC_rich Low_complexity Low_complexity 1 32 0 235 301 0 24 chr3 128740094 128740177 -89296981 + CT-rich Low_complexity Low_complexity 3 83 0 250 221 39 13 chr3 128740340 128740417 -89296741 + C-rich Low_complexity Low_complexity 4 82 0 915 218 50 27 chr3 128741197 128741459 -89295699 + L1ME4a LINE L1 5542 5809 -312 670 209 131 5 chr3 128741530 128741721 -89295437 + MIR SINE MIR 48 262 0 1064 193 27 49 chr3 128741788 128742011 -89295147 - MER20 DNA MER1_type 0 219 2 226 289 48 29 chr3 128742012 128742116 -89295042 + L1ME4a LINE L1 5960 6065 -56 2451 64 0 3 chr3 128743059 128743357 -89293801 + AluY SINE Alu 1 297 -14 235 306 47 12 chr3 128744025 128744110 -89293048 + L2 LINE L2 3226 3313 0 24 0 0 0 chr3 128744519 128744543 -89292615 + AT_rich Low_complexity Low_complexity 1 24 0 216 0 0 0 chr3 128746398 128746422 -89290736 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2112 100 7 4 chr3 128746425 128746706 -89290452 - AluSx SINE Alu -30 282 1 185 292 0 0 chr3 128747086 128747134 -89290024 + MER5A DNA MER1_type 10 57 -132 319 341 29 29 chr3 128747206 128747482 -89289676 + L1M4 LINE L1 4969 5244 -902 23 33 0 0 chr3 128747484 128747514 -89289644 + AT_rich Low_complexity Low_complexity 1 30 0 211 250 176 28 chr3 128747610 128747718 -89289440 - MIR SINE MIR -71 191 68 1688 172 26 0 chr3 128747789 128748057 -89289101 + AluSx SINE Alu 1 275 -37 312 204 39 48 chr3 128748821 128748924 -89288234 - LTR67 LTR ERVL 0 557 456 1264 220 103 35 chr3 128749152 128749434 -89287724 + AluJb SINE Alu 1 301 -11 1237 110 55 81 chr3 128750198 128750434 -89286724 - MER30 DNA MER1_type 0 230 1 1858 141 10 13 chr3 128750488 128750786 -89286372 + AluSx SINE Alu 1 297 -15 293 200 169 0 chr3 128751312 128751377 -89285781 - L2 LINE L2 -6 3307 3232 1466 48 0 0 chr3 128752149 128752317 -89284841 - AluSq SINE Alu -14 299 132 2098 112 6 26 chr3 128753129 128753442 -89283716 - AluJb SINE Alu 0 312 6 2167 118 7 0 chr3 128753456 128753761 -89283397 - AluSx SINE Alu -3 309 3 562 183 71 16 chr3 128753990 128754116 -89283042 - FLAM_A SINE Alu 0 133 1 769 229 70 9 chr3 128754360 128754574 -89282584 - L1ME3A LINE L1 -5 6165 5939 2964 156 59 184 chr3 128755358 128756274 -89280884 - L1MC4 LINE L1 0 8042 7013 1879 173 0 7 chr3 128756274 128756580 -89280578 - AluJb SINE Alu -8 304 1 2964 156 59 184 chr3 128756580 128756604 -89280554 - L1MC4 LINE L1 -1029 7013 7274 1680 166 10 30 chr3 128756604 128756906 -89280252 - AluJo SINE Alu -14 298 3 2964 156 59 184 chr3 128756906 128757138 -89280020 - L1MC4 LINE L1 -767 7275 7016 1134 150 56 52 chr3 128757138 128757371 -89279787 + MER46A DNA MER2_type 1 234 -2 486 250 73 0 chr3 128758357 128758493 -89278665 - L2 LINE L2 -247 3066 2921 1368 176 113 41 chr3 128759259 128759405 -89277753 - MER58B DNA MER1_type -2079 341 207 2373 86 6 16 chr3 128759405 128759720 -89277438 + AluSx SINE Alu 1 312 0 1368 176 113 41 chr3 128759720 128759891 -89277267 - MER58B DNA MER1_type -2213 207 1 386 255 186 7 chr3 128759899 128760044 -89277114 + MER5B DNA MER1_type 1 171 -7 464 243 50 77 chr3 128760489 128760670 -89276488 - Charlie8 DNA MER1_type -2228 189 14 438 310 66 14 chr3 128760778 128760991 -89276167 + MIR SINE MIR 30 253 -9 838 167 0 0 chr3 128761413 128761545 -89275613 + FLAM_A SINE Alu 2 133 0 2065 124 42 24 chr3 128761795 128762126 -89275032 + MER1B DNA MER1_type 1 337 0 2098 111 28 3 chr3 128763193 128763482 -89273676 + AluSx SINE Alu 1 296 -16 26740 69 3 4 chr3 128764012 128767481 -89269677 + L1P LINE L1 298 3762 -2384 1898 207 8 11 chr3 128767481 128767843 -89269315 + MSTD LTR MaLR 36 396 0 2187 48 24 102 chr3 128768361 128768694 -89268464 + AluY SINE Alu 1 307 -4 683 121 0 35 chr3 128768724 128768840 -89268318 + FLAM_C SINE Alu 20 131 -12 868 169 34 94 chr3 128768872 128769258 -89267900 + L1MB7 LINE L1 5797 6123 -61 468 0 0 0 chr3 128769258 128769310 -89267848 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 426 341 42 18 chr3 128770110 128770277 -89266881 - MER65C-int LTR ERV1 -4093 2708 2538 322 293 0 20 chr3 128770212 128770311 -89266847 - HERVL32 LTR ERVL -1137 2281 2185 * 394 284 16 16 chr3 128770410 128770537 -89266621 - MER65C-int LTR ERV1 -4363 284 158 2102 128 19 50 chr3 128771786 128772162 -89264996 + THE1B LTR MaLR 1 364 0 11765 100 6 3 chr3 128772162 128773738 -89263420 + THE1B-int LTR MaLR 1 1580 0 2100 116 24 66 chr3 128773738 128774118 -89263040 + THE1B LTR MaLR 1 364 0 2126 143 10 0 chr3 128774145 128774452 -89262706 - AluSx SINE Alu -2 310 1 198 0 0 0 chr3 128775422 128775444 -89261714 + (A)n Simple_repeat Simple_repeat 1 22 0 954 263 91 54 chr3 128775608 128776037 -89261121 - MER65C LTR ERV1 -12 449 5 2051 241 103 29 chr3 128776056 128776585 -89260573 + MLT1E LTR MaLR 1 574 -19 1832 179 26 45 chr3 128776585 128776966 -89260192 - MLT1A2 LTR MaLR 0 374 1 2051 241 103 29 chr3 128776966 128776988 -89260170 + MLT1E LTR MaLR 574 593 0 1456 207 68 58 chr3 128777099 128777143 -89260015 + LTR40b LTR ERVL 1 43 -419 2456 78 0 0 chr3 128777143 128777436 -89259722 - AluSc SINE Alu -16 293 1 1456 207 68 58 chr3 128777436 128777767 -89259391 + LTR40b LTR ERVL 43 383 -79 2067 124 58 22 chr3 128777767 128778129 -89259029 + THE1C LTR MaLR 1 375 0 1456 207 68 58 chr3 128778129 128778162 -89258996 + LTR40b LTR ERVL 383 414 -48 25 0 0 0 chr3 128779089 128779114 -89258044 + AT_rich Low_complexity Low_complexity 1 25 0 943 99 8 8 chr3 128779114 128779245 -89257913 - AluSg/x SINE Alu -26 286 156 1939 159 46 53 chr3 128779367 128779783 -89257375 + MLT2D LTR ERVL 2 414 0 1693 173 0 23 chr3 128779808 128780108 -89257050 + AluJo SINE Alu 6 298 -14 2431 91 3 0 chr3 128780312 128780620 -89256538 + AluSg SINE Alu 1 309 -1 2147 120 0 0 chr3 128781599 128781914 -89255244 - AluSx SINE Alu 0 315 1 198 163 23 0 chr3 128783107 128783150 -89254008 + MIR SINE MIR 211 254 -8 205 338 29 22 chr3 128783238 128783374 -89253784 - L2 LINE L2 -217 3055 2919 43088 55 4 2 chr3 128783378 128789263 -89247895 + L1PA5 LINE L1 8 5901 -253 23 0 0 0 chr3 128789392 128789415 -89247743 + GC_rich Low_complexity Low_complexity 1 23 0 415 312 98 56 chr3 128789672 128790031 -89247127 - MER89-int LTR ERV1 -2019 2628 2255 1623 175 29 4 chr3 128790496 128790776 -89246382 - AluJo SINE Alu -25 287 1 225 0 0 0 chr3 128790776 128790801 -89246357 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 1691 157 25 21 chr3 128790801 128791082 -89246076 - AluSx SINE Alu -30 282 1 1753 139 37 24 chr3 128791154 128791448 -89245710 - AluJb SINE Alu -14 298 1 299 317 63 30 chr3 128791889 128792157 -89245001 - MER89-int LTR ERV1 -3151 3650 3374 973 323 27 31 chr3 128792430 128792910 -89244248 - MER89-int LTR ERV1 -826 6711 6234 2152 119 7 0 chr3 128793266 128793560 -89243598 + AluSg SINE Alu 1 296 -14 351 125 47 0 chr3 128795214 128795278 -89241880 + AluS SINE Alu 1 67 -241 259 178 0 0 chr3 128795655 128795700 -89241458 + CT-rich Low_complexity Low_complexity 1 45 0 368 308 122 27 chr3 128796514 128796735 -89240423 - MIR SINE MIR 0 262 21 1943 136 7 14 chr3 128796911 128797206 -89239952 + AluSx SINE Alu 5 297 -15 259 43 22 43 chr3 128797220 128797266 -89239892 + (GGGAA)n Simple_repeat Simple_repeat 3 47 0 207 163 0 47 chr3 128799532 128799575 -89237583 + T-rich Low_complexity Low_complexity 5 45 0 1708 189 0 29 chr3 128799618 128799931 -89237227 - AluJb SINE Alu -8 304 1 200 290 0 43 chr3 128799954 128800092 -89237066 + T-rich Low_complexity Low_complexity 4 135 0 439 301 74 12 chr3 128800242 128800405 -89236753 + MIR3 SINE MIR 3 175 -33 2517 61 0 3 chr3 128800688 128801000 -89236158 - AluY SINE Alu 0 311 1 458 275 188 23 chr3 128802244 128802590 -89234568 + L3 LINE CR1 1173 1575 -2 203 306 12 35 chr3 128802635 128802720 -89234438 + MIR SINE MIR 125 207 -55 651 205 96 15 chr3 128804006 128804210 -89232948 + MIR SINE MIR 24 249 -13 504 193 77 54 chr3 128804532 128804734 -89232424 - MLT1F LTR MaLR 0 542 354 1575 229 90 51 chr3 128804795 128805287 -89231871 - L1ME3A LINE L1 -341 5829 5358 2126 117 23 13 chr3 128805287 128805596 -89231562 - AluSx SINE Alu 0 312 1 1575 229 90 51 chr3 128805596 128806183 -89230975 - L1ME3A LINE L1 -812 5358 4705 537 134 61 0 chr3 128806184 128806266 -89230892 - Tigger3(Golem) DNA MER2_type -2942 87 1 420 293 160 9 chr3 128806266 128806491 -89230667 + L2 LINE L2 2534 2792 -522 371 80 0 0 chr3 128806583 128806633 -89230525 + Alu SINE Alu 245 294 -7 1703 69 32 5 chr3 128807616 128807833 -89229325 - AluY SINE Alu -5 306 84 245 301 121 18 chr3 128808187 128808353 -89228805 - L2 LINE L2 -844 2470 2288 731 274 96 0 chr3 128809331 128809561 -89227597 + MIR SINE MIR 1 252 -10 1467 132 15 77 chr3 128810857 128811129 -89226029 - MER1B DNA MER1_type 0 339 85 1144 263 34 0 chr3 128811635 128811989 -89225169 + L1M4 LINE L1 3190 3555 -2591 280 155 226 36 chr3 128812030 128812114 -89225044 - L2 LINE L2 0 3313 3214 2426 97 7 0 chr3 128812753 128813062 -89224096 - AluSq SINE Alu -2 311 1 930 166 53 12 chr3 128813245 128813414 -89223744 + MER45A DNA AcHobo 1 176 -2 779 261 55 0 chr3 128813473 128813691 -89223467 + MIR SINE MIR 7 236 -26 921 190 50 150 chr3 128813966 128814130 -89223028 - MER113 DNA MER1_type? -3 518 339 2182 70 42 7 chr3 128814130 128814415 -89222743 - AluSq SINE Alu -18 295 1 921 190 50 150 chr3 128814415 128814671 -89222487 - MER113 DNA MER1_type? -182 339 140 1979 130 0 65 chr3 128814836 128815160 -89221998 - AluSx SINE Alu -9 303 1 653 248 89 37 chr3 128815745 128816173 -89220985 + LTR33 LTR ERVL 23 521 0 222 253 40 13 chr3 128818026 128818101 -89219057 + MIR SINE MIR 34 110 -152 579 242 18 12 chr3 128819134 128819299 -89217859 - MER5B DNA MER1_type -11 167 2 264 323 92 12 chr3 128819589 128819753 -89217405 + L2 LINE L2 2665 2841 -473 507 269 112 4 chr3 128820062 128820304 -89216854 + LTR33A LTR ERVL 256 523 0 354 272 0 10 chr3 128821242 128821345 -89215813 + MIR SINE MIR 56 157 -105 2260 92 0 3 chr3 128821352 128821635 -89215523 + AluSx SINE Alu 1 282 -30 216 0 0 0 chr3 128821638 128821662 -89215496 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 247 125 34 80 chr3 128822714 128822802 -89214356 + CT-rich Low_complexity Low_complexity 3 86 0 183 42 0 0 chr3 128822805 128822829 -89214329 + (CCCCG)n Simple_repeat Simple_repeat 1 24 0 222 369 57 8 chr3 128822951 128823073 -89214085 - L2 LINE L2 0 3272 3145 300 289 232 9 chr3 128823608 128823819 -89213339 + MIR SINE MIR 4 261 -1 1880 152 7 10 chr3 128825020 128825322 -89211836 - AluJb SINE Alu -11 301 1 1739 152 56 34 chr3 128825540 128825948 -89211210 - SVA Other Other -538 848 432 387 221 41 76 chr3 128826080 128826225 -89210933 + L2 LINE L2 2952 3091 -222 956 151 95 0 chr3 128826235 128826414 -89210744 + MER3 DNA MER1_type 3 198 -11 576 240 16 0 chr3 128826474 128826595 -89210563 + L2 LINE L2 3191 3313 0 185 353 138 0 chr3 128826593 128826709 -89210449 - MIR3 SINE MIR -71 137 6 * 513 190 44 70 chr3 128827580 128827738 -89209420 + MIR SINE MIR 66 219 -43 24 0 0 0 chr3 128828089 128828113 -89209045 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr3 128828119 128828145 -89209013 + AT_rich Low_complexity Low_complexity 1 26 0 370 274 0 0 chr3 128829340 128829442 -89207716 + MIR SINE MIR 56 157 -105 2359 88 14 3 chr3 128829449 128829746 -89207412 + AluSq SINE Alu 1 300 -13 859 107 67 7 chr3 128829746 128829895 -89207263 + L1MA8 LINE L1 6131 6288 -3 2424 78 0 10 chr3 128830009 128830316 -89206842 - AluSp SINE Alu -9 304 1 1013 89 48 0 chr3 128830560 128830706 -89206452 - L1PA12 LINE L1 0 6168 6016 1731 151 34 14 chr3 128830893 128831185 -89205973 + AluJo SINE Alu 1 298 -14 6934 154 53 57 chr3 128831710 128831954 -89205204 - L1MCa LINE L1 -4953 1473 1230 189 0 0 0 chr3 128831954 128831975 -89205183 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 6934 154 53 57 chr3 128831975 128833188 -89203970 - L1MCa LINE L1 -5196 1230 21 1409 209 58 29 chr3 128833188 128833533 -89203625 + LTR52 LTR ERVL 64 418 -3 2163 127 0 0 chr3 128833577 128833869 -89203289 + AluSx SINE Alu 1 292 -20 2056 219 70 31 chr3 128833869 128834340 -89202818 + L1MB7 LINE L1 5598 6096 -88 2413 81 0 3 chr3 128834340 128834637 -89202521 - AluSc SINE Alu -13 296 1 2056 219 70 31 chr3 128834637 128834721 -89202437 + L1MB7 LINE L1 6096 6175 -9 376 298 59 48 chr3 128835019 128835291 -89201867 + L1ME LINE L1 4556 4830 -1316 746 139 0 9 chr3 128835575 128835690 -89201468 - Tigger2 DNA MER2_type -51 2667 2554 * 995 151 19 48 chr3 128835689 128835849 -89201309 - Tigger2 DNA MER2_type -2508 210 56 2184 117 13 10 chr3 128835849 128836157 -89201001 + AluSx SINE Alu 1 309 -3 995 151 19 48 chr3 128836157 128836202 -89200956 - Tigger2 DNA MER2_type -2662 56 11 799 280 124 28 chr3 128836374 128836834 -89200324 + L1ME LINE L1 5296 5799 -322 2256 113 0 3 chr3 128836919 128837230 -89199928 - AluSg SINE Alu 0 310 1 21 82 0 0 chr3 128837337 128837386 -89199772 + AT_rich Low_complexity Low_complexity 1 49 0 1872 166 7 0 chr3 128837398 128837693 -89199465 - AluSx SINE Alu -15 297 1 757 254 34 48 chr3 128838831 128839182 -89197976 - L1MC4 LINE L1 0 8042 7697 898 255 91 37 chr3 128839184 128839333 -89197825 - L1MC4 LINE L1 -511 7531 7391 1895 162 120 118 chr3 128839333 128839560 -89197598 - MLT1E2 LTR MaLR 0 626 401 2115 110 0 58 chr3 128839560 128839887 -89197271 + AluSx SINE Alu 1 308 -4 1895 162 120 118 chr3 128839887 128840284 -89196874 - MLT1E2 LTR MaLR -225 401 1 898 255 91 37 chr3 128840284 128840562 -89196596 - L1MC4 LINE L1 -651 7391 7081 24 53 0 0 chr3 128840604 128840642 -89196516 + AT_rich Low_complexity Low_complexity 1 38 0 2081 175 30 14 chr3 128840740 128841175 -89195983 - L1MB2 LINE L1 -2 6169 5728 235 235 262 13 chr3 128841313 128841462 -89195696 - MER20 DNA MER1_type -4 215 30 630 95 0 21 chr3 128842016 128842111 -89195047 + AluSg/x SINE Alu 216 308 -4 9467 195 33 27 chr3 128842323 128842409 -89194749 + L1 LINE L1 1765 1849 -4297 186 43 0 0 chr3 128842409 128842432 -89194726 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9467 195 33 27 chr3 128842432 128844799 -89192359 + L1 LINE L1 1849 4173 -1973 1859 139 30 0 chr3 128844802 128845068 -89192090 + AluSx SINE Alu 1 274 -38 972 165 24 18 chr3 128845073 128845237 -89191921 + FRAM SINE Alu 1 158 -18 5376 119 29 50 chr3 128845267 128846233 -89190925 + L1MA5 LINE L1 5345 6290 -10 300 27 0 0 chr3 128846329 128846366 -89190792 + (TG)n Simple_repeat Simple_repeat 1 37 0 579 242 18 12 chr3 128848861 128849026 -89188132 - MER5B DNA MER1_type -11 167 2 264 323 92 12 chr3 128849316 128849480 -89187678 + L2 LINE L2 2665 2841 -473 507 269 112 4 chr3 128849789 128850031 -89187127 + LTR33A LTR ERVL 256 523 0 530 301 19 15 chr3 128850967 128851076 -89186082 + MIR SINE MIR 56 168 -94 2414 91 0 0 chr3 128851076 128851372 -89185786 + AluSx SINE Alu 1 296 -16 530 301 19 15 chr3 128851372 128851468 -89185690 + MIR SINE MIR 168 262 0 921 206 51 126 chr3 128851570 128851959 -89185199 + MLT1A2 LTR MaLR 15 374 0 2382 109 0 0 chr3 128851982 128852293 -89184865 + AluSq SINE Alu 1 311 -2 1840 153 7 29 chr3 128852560 128852868 -89184290 + AluJb SINE Alu 1 301 -11 2337 106 0 6 chr3 128852878 128853190 -89183968 + AluSx SINE Alu 1 310 -2 933 79 0 0 chr3 128853792 128853919 -89183239 + (TTC)n Simple_repeat Simple_repeat 2 128 0 764 194 14 0 chr3 128853925 128854069 -89183089 - FRAM SINE Alu -30 146 1 339 287 0 0 chr3 128854200 128854301 -89182857 + MIR SINE MIR 39 139 -69 285 362 24 8 chr3 128855034 128855161 -89181997 + MIR3 SINE MIR 4 132 -76 610 286 22 18 chr3 128855344 128855568 -89181590 - MIR SINE MIR -33 229 5 233 216 57 34 chr3 128855814 128855902 -89181256 + MER104 DNA Tc2 3 92 -88 2186 151 0 0 chr3 128858235 128858547 -89178611 - AluSx SINE Alu 0 312 1 23 33 0 0 chr3 128859466 128859496 -89177662 + AT_rich Low_complexity Low_complexity 1 30 0 1766 99 11 50 chr3 128860156 128860438 -89176720 - AluSx SINE Alu -2 310 40 730 276 9 13 chr3 128860914 128861142 -89176016 + L2 LINE L2 2444 2670 -644 346 202 158 44 chr3 128861138 128861252 -89175906 + L2 LINE L2 3187 3313 0 * 2364 91 0 10 chr3 128861377 128861685 -89175473 - AluY SINE Alu -6 305 1 2465 66 0 0 chr3 128862094 128862395 -89174763 - AluY SINE Alu -10 301 1 210 245 108 39 chr3 128862721 128862823 -89174335 - MIR3 SINE MIR -22 186 78 2413 75 0 0 chr3 128863220 128863512 -89173646 + AluY SINE Alu 1 292 -19 237 241 112 52 chr3 128863587 128863703 -89173455 - MIR SINE MIR 0 262 140 646 257 116 55 chr3 128863704 128864015 -89173143 - LTR16C LTR ERVL -2 489 160 5574 176 15 22 chr3 128864130 128866171 -89170987 + L1PA16 LINE L1 4125 6145 -21 323 274 58 2 chr3 128866849 128866976 -89170182 - MIR SINE MIR -65 143 6 513 323 106 6 chr3 128867421 128867582 -89169576 - MER91A DNA MER1_type -8 188 12 909 92 13 13 chr3 128867710 128867862 -89169296 + (TTTC)n Simple_repeat Simple_repeat 1 152 0 444 252 76 42 chr3 128867870 128867989 -89169169 - L2 LINE L2 -4 3268 3146 495 333 99 6 chr3 128869564 128869726 -89167432 - MER91A DNA MER1_type -8 188 12 930 86 13 13 chr3 128869853 128870005 -89167153 + (TTTC)n Simple_repeat Simple_repeat 1 152 0 457 244 76 42 chr3 128870013 128870132 -89167026 - L2 LINE L2 -4 3268 3146 1917 157 37 70 chr3 128871646 128872047 -89165111 + MLT1B LTR MaLR 1 388 -2 303 169 90 11 chr3 128873420 128873509 -89163649 - L1MB3 LINE L1 -1 6182 6087 3121 108 14 30 chr3 128873514 128874007 -89163151 - L1MA4 LINE L1 -281 6019 5535 325 278 60 57 chr3 128874022 128874142 -89163016 + L1M4 LINE L1 2875 2993 -3153 1624 184 63 39 chr3 128874142 128874506 -89162652 + MER93b LTR ERV1 1 373 0 325 278 60 57 chr3 128874506 128874684 -89162474 + L1M4 LINE L1 2993 3174 -2972 1541 251 94 48 chr3 128874693 128875531 -89161627 + L2 LINE L2 2410 3277 -36 567 275 125 77 chr3 128875549 128876523 -89160635 + L1M4 LINE L1 3199 4219 -1927 390 263 69 114 chr3 128877536 128877825 -89159333 - L2 LINE L2 -21 3251 2976 222 37 0 0 chr3 128878152 128878179 -89158979 + (CA)n Simple_repeat Simple_repeat 1 27 0 333 312 182 7 chr3 128878880 128879034 -89158124 - MIR SINE MIR -50 212 32 22 0 0 0 chr3 128879790 128879812 -89157346 + AT_rich Low_complexity Low_complexity 1 22 0 309 324 57 0 chr3 128880593 128880698 -89156460 + L2 LINE L2 3112 3222 -50 267 308 96 62 chr3 128880780 128880926 -89156232 - MIR3 SINE MIR -11 197 47 382 295 133 0 chr3 128881304 128881409 -89155749 - MIR SINE MIR -140 122 4 1418 290 62 2 chr3 128881616 128882051 -89155107 - LTR16B LTR ERVL 0 464 4 254 319 59 8 chr3 128882202 128882321 -89154837 - MER5A DNA MER1_type -22 167 43 * 331 261 99 9 chr3 128882231 128882342 -89154816 + MER5A DNA MER1_type 68 188 -1 463 288 8 8 chr3 128882587 128882705 -89154453 + L2 LINE L2 3182 3299 -14 746 198 8 0 chr3 128882870 128882991 -89154167 - AluJb SINE Alu -58 254 133 1493 189 7 14 chr3 128882991 128883328 -89153830 - AluJo SINE Alu 0 335 1 1546 154 9 103 chr3 128883531 128883862 -89153296 - AluJb SINE Alu 0 302 3 2034 181 96 16 chr3 128884192 128884629 -89152529 + MER70A LTR ERVL 1 472 0 588 223 187 6 chr3 128885221 128885387 -89151771 - MIR SINE MIR -14 248 53 304 217 0 43 chr3 128886575 128886644 -89150514 + MER21B LTR ERV1 3 68 -795 3463 212 73 33 chr3 128886672 128887485 -89149673 + MER21B LTR ERV1 19 863 0 328 257 110 0 chr3 128887502 128887611 -89149547 + MIR3 SINE MIR 45 165 -43 200 35 35 0 chr3 128888003 128888032 -89149126 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 204 40 0 0 chr3 128888282 128888307 -89148851 + (TC)n Simple_repeat Simple_repeat 2 26 0 293 200 53 0 chr3 128888327 128888402 -89148756 - L2 LINE L2 -1919 1395 1317 228 343 15 58 chr3 128888983 128889120 -89148038 - L2 LINE L2 -179 3093 2963 254 260 10 62 chr3 128889237 128889333 -89147825 - L2 LINE L2 -1 3312 3222 1332 274 42 6 chr3 128889624 128889956 -89147202 + LTR16C LTR ERVL 148 491 0 280 248 135 50 chr3 128892118 128892259 -89144899 - MIR SINE MIR -82 180 28 2191 105 0 6 chr3 128892295 128892608 -89144550 + AluY SINE Alu 1 311 0 1981 147 59 43 chr3 128893057 128893431 -89143727 + MLT1B LTR MaLR 1 380 -10 2079 122 0 0 chr3 128893569 128893863 -89143295 - AluSx SINE Alu -18 294 1 872 138 84 25 chr3 128893978 128894181 -89142977 - L1MA7 LINE L1 0 6291 6077 1574 170 0 50 chr3 128894236 128894439 -89142719 - AluJo SINE Alu -2 310 127 1953 180 6 6 chr3 128894439 128894772 -89142386 - MER1B DNA MER1_type -2 335 3 1574 170 0 50 chr3 128894772 128894886 -89142272 - AluJo SINE Alu -185 127 9 639 222 94 90 chr3 128895436 128895670 -89141488 - MIR SINE MIR -14 248 14 194 269 231 9 chr3 128895848 128895956 -89141202 - MIR SINE MIR -65 143 33 513 170 95 68 chr3 128896008 128896125 -89141033 + MIR SINE MIR 88 211 -51 2382 79 0 0 chr3 128896125 128896428 -89140730 + AluSx SINE Alu 1 303 -9 513 170 95 68 chr3 128896428 128896457 -89140701 + MIR SINE MIR 211 238 -24 271 235 59 15 chr3 128898138 128898206 -89138952 + MIR SINE MIR 127 197 -65 27 29 0 0 chr3 128898425 128898459 -89138699 + AT_rich Low_complexity Low_complexity 1 34 0 275 263 0 0 chr3 128898471 128898528 -89138630 - L1ME1 LINE L1 -98 6068 6012 257 292 34 0 chr3 128898528 128898617 -89138541 + MARNA DNA Mariner 266 357 -229 438 307 52 22 chr3 128898639 128898870 -89138288 - MER34 LTR ERV1 -21 521 284 2126 238 85 12 chr3 128899100 128899663 -89137495 - LTR31 LTR ERV1 -15 604 1 284 319 11 0 chr3 128899710 128899804 -89137354 - MER34 LTR ERV1 -447 95 1 1785 153 30 0 chr3 128900022 128900323 -89136835 + AluJb SINE Alu 1 310 -2 532 303 17 67 chr3 128900393 128900453 -89136705 + MIR SINE MIR 23 84 -178 2317 82 3 0 chr3 128900453 128900756 -89136402 + AluSg SINE Alu 1 304 -6 532 303 17 67 chr3 128900756 128900933 -89136225 + MIR SINE MIR 84 248 -14 450 259 50 29 chr3 128901194 128901333 -89135825 - MLT1L LTR MaLR -53 562 421 227 295 0 16 chr3 128901830 128901891 -89135267 - L2 LINE L2 -12 3301 3242 435 198 0 0 chr3 128902256 128902342 -89134816 - L1MA10 LINE L1 0 6334 6249 2364 129 46 41 chr3 128902410 128902822 -89134336 + MLT2D LTR ERVL 1 414 0 2106 91 0 11 chr3 128902847 128903133 -89134025 + AluSq SINE Alu 6 288 -25 186 43 0 0 chr3 128903139 128903162 -89133996 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2322 129 9 3 chr3 128903394 128903727 -89133431 + MER72 LTR ERV1 204 538 -184 861 129 0 0 chr3 128903728 128903872 -89133286 + AluSg/x SINE Alu 159 302 0 1141 146 16 10 chr3 128903872 128904064 -89133094 + MER72 LTR ERV1 530 722 0 2159 109 3 0 chr3 128904069 128904371 -89132787 - AluSx SINE Alu -9 303 1 586 208 167 7 chr3 128904373 128904517 -89132641 + MER58B DNA MER1_type 175 341 0 24 0 0 0 chr3 128905258 128905282 -89131876 + AT_rich Low_complexity Low_complexity 1 24 0 272 306 47 12 chr3 128905691 128905776 -89131382 - L2 LINE L2 0 3313 3226 180 45 0 0 chr3 128905848 128905870 -89131288 - MIR SINE MIR -230 32 11 2335 71 0 0 chr3 128906444 128906741 -89130417 - AluY SINE Alu -14 297 1 252 245 108 39 chr3 128907137 128907239 -89129919 + MIR3 SINE MIR 78 186 -22 2338 66 0 0 chr3 128907565 128907866 -89129292 + AluY SINE Alu 1 301 -10 633 307 40 0 chr3 128908721 128908897 -89128261 + MIR SINE MIR 56 238 -24 827 197 38 28 chr3 128908988 128909166 -89127992 + MER3 DNA MER1_type 1 132 -77 2150 97 7 3 chr3 128909168 128909467 -89127691 - AluSq SINE Alu -13 300 1 660 240 11 28 chr3 128909485 128909664 -89127494 - MER5B DNA MER1_type 0 178 3 228 332 70 39 chr3 128910211 128910455 -89126703 + L2 LINE L2 2714 2974 -298 199 322 123 20 chr3 128910590 128910736 -89126422 + L2 LINE L2 3100 3260 -12 2555 40 0 0 chr3 128910737 128911036 -89126122 + AluY SINE Alu 2 300 -11 292 262 62 102 chr3 128911189 128911414 -89125744 - MIR SINE MIR -12 250 35 573 242 54 7 chr3 128911697 128911846 -89125312 + MLT1J LTR MaLR 20 175 -336 195 186 0 0 chr3 128912001 128912044 -89125114 + GA-rich Low_complexity Low_complexity 1 43 0 196 323 31 0 chr3 128912442 128912507 -89124651 + MIR SINE MIR 55 121 -87 321 148 37 0 chr3 128915432 128915486 -89121672 - Alu SINE Alu -246 56 1 354 250 144 0 chr3 128915814 128915918 -89121240 + L2 LINE L2 3149 3267 -5 2116 134 3 0 chr3 128918245 128918551 -89118607 + AluSq SINE Alu 1 307 -6 214 209 233 12 chr3 128918755 128918841 -89118317 - MIR SINE MIR 0 262 158 283 176 0 0 chr3 128918841 128918892 -89118266 - MER116 DNA Mariner -29 51 1 216 248 266 18 chr3 128918892 128919001 -89118157 - MIR SINE MIR -111 151 16 191 128 51 0 chr3 128919010 128919049 -89118109 + T-rich Low_complexity Low_complexity 4 44 0 449 251 128 17 chr3 128920541 128920710 -89116448 + MIR SINE MIR 52 249 -13 1945 102 38 0 chr3 128920710 128920974 -89116184 - AluY SINE Alu -37 274 1 449 251 128 17 chr3 128920974 128920986 -89116172 + MIR SINE MIR 249 258 -4 2069 132 3 7 chr3 128921492 128921788 -89115370 + AluSx SINE Alu 1 295 -17 456 283 18 9 chr3 128922149 128922262 -89114896 - MER81 DNA DNA 0 114 1 517 184 178 37 chr3 128922284 128922447 -89114711 + MER5A DNA MER1_type 4 189 0 5383 74 19 0 chr3 128923314 128923992 -89113166 + LTR8 LTR ERV1 1 691 0 1721 91 133 11 chr3 128924187 128924450 -89112708 - AluSx SINE Alu -17 295 1 2330 112 3 0 chr3 128924609 128924912 -89112246 - AluSx SINE Alu -8 304 1 3129 129 42 59 chr3 128925755 128925786 -89111372 - L1MB2 LINE L1 -1 6170 6140 2202 69 33 4 chr3 128925786 128926087 -89111071 + AluSq SINE Alu 1 309 0 3129 129 42 59 chr3 128926087 128926680 -89110478 - L1MB2 LINE L1 -31 6140 5556 392 220 40 0 chr3 128927100 128927200 -89109958 - MIR SINE MIR -59 203 100 225 0 0 0 chr3 128927540 128927565 -89109593 + (CA)n Simple_repeat Simple_repeat 2 26 0 287 302 23 12 chr3 128927914 128928000 -89109158 + MIR3 SINE MIR 79 165 -43 393 353 153 24 chr3 128928064 128928523 -89108635 - L3 LINE CR1 -126 1451 934 2371 94 7 3 chr3 128928696 128929005 -89108153 - AluSq SINE Alu -2 311 2 321 286 48 0 chr3 128929218 128929323 -89107835 - MIR3 SINE MIR -16 192 83 2225 99 0 7 chr3 128929479 128929788 -89107370 + AluSg SINE Alu 1 307 0 189 175 193 0 chr3 128930667 128930724 -89106434 + MIR SINE MIR 46 113 -95 630 245 58 69 chr3 128931548 128931895 -89105263 + L2 LINE L2 2968 3310 -3 219 236 9 91 chr3 128931917 128932027 -89105131 + MIR SINE MIR 61 161 -101 2224 99 0 7 chr3 128933703 128934012 -89103146 - AluSg SINE Alu 0 307 1 321 286 48 0 chr3 128934168 128934273 -89102885 + MIR3 SINE MIR 83 192 -16 1875 126 61 7 chr3 128934486 128934779 -89102379 + AluSx SINE Alu 2 310 -2 206 373 137 11 chr3 128934814 128935165 -89101993 + L2 LINE L2 2313 2707 -607 2307 132 8 27 chr3 128935708 128936079 -89101079 + THE1B LTR MaLR 1 364 0 1057 164 22 78 chr3 128936294 128936360 -89100798 + MER58A DNA MER1_type 6 74 -2346 2373 108 0 6 chr3 128936360 128936675 -89100483 + AluSq SINE Alu 1 313 0 1057 164 22 78 chr3 128936675 128936840 -89100318 + MER58A DNA MER1_type 74 224 0 2279 114 0 0 chr3 128937182 128937481 -89099677 + AluSx SINE Alu 1 299 -13 327 282 100 58 chr3 128937966 128938225 -89098933 + MARNA DNA Mariner 269 538 -48 1514 146 14 14 chr3 128938237 128938517 -89098641 + AluSg SINE Alu 1 280 -30 1695 174 13 16 chr3 128938595 128938905 -89098253 - AluJo SINE Alu -3 309 1 2012 153 42 0 chr3 128939016 128939349 -89097809 + MER7A DNA MER2_type 1 345 -1 2116 134 3 0 chr3 128939787 128940093 -89097065 + AluSq SINE Alu 1 307 -6 214 209 233 12 chr3 128940297 128940383 -89096775 - MIR SINE MIR 0 262 158 283 176 0 0 chr3 128940383 128940434 -89096724 - MER116 DNA Mariner -29 51 1 216 248 266 18 chr3 128940434 128940543 -89096615 - MIR SINE MIR -111 151 16 191 128 51 0 chr3 128940552 128940591 -89096567 + T-rich Low_complexity Low_complexity 4 44 0 449 251 128 17 chr3 128942083 128942252 -89094906 + MIR SINE MIR 52 249 -13 1945 102 38 0 chr3 128942252 128942516 -89094642 - AluY SINE Alu -37 274 1 449 251 128 17 chr3 128942516 128942528 -89094630 + MIR SINE MIR 249 258 -4 2069 132 3 7 chr3 128943034 128943330 -89093828 + AluSx SINE Alu 1 295 -17 456 283 18 9 chr3 128943691 128943804 -89093354 - MER81 DNA DNA 0 114 1 517 184 178 37 chr3 128943826 128943989 -89093169 + MER5A DNA MER1_type 4 189 0 5400 72 18 0 chr3 128944854 128945533 -89091625 + LTR8 LTR ERV1 1 691 0 1721 91 133 11 chr3 128945728 128945991 -89091167 - AluSx SINE Alu -17 295 1 2330 112 3 0 chr3 128946150 128946453 -89090705 - AluSx SINE Alu -8 304 1 2506 86 0 6 chr3 128947327 128947642 -89089516 + AluSq SINE Alu 1 313 0 989 142 25 12 chr3 128947645 128947807 -89089351 + MER58B DNA MER1_type 178 341 0 2279 114 0 0 chr3 128948149 128948448 -89088710 + AluSx SINE Alu 1 299 -13 346 292 92 54 chr3 128948937 128949197 -89087961 + MARNA DNA Mariner 269 538 -48 2437 87 0 3 chr3 128949209 128949518 -89087640 + AluSg SINE Alu 1 308 -2 393 353 153 24 chr3 128949691 128950150 -89087008 + L3 LINE CR1 934 1451 -126 287 302 23 12 chr3 128950214 128950300 -89086858 - MIR3 SINE MIR -43 165 79 225 0 0 0 chr3 128950649 128950674 -89086484 + (TG)n Simple_repeat Simple_repeat 2 26 0 392 220 40 0 chr3 128951014 128951114 -89086044 + MIR SINE MIR 100 203 -59 1318 114 81 5 chr3 128951534 128951744 -89085414 + L1MB7 LINE L1 5556 5781 -390 248 276 0 16 chr3 128951834 128952081 -89085077 + G-rich Low_complexity Low_complexity 1 306 0 21 0 0 0 chr3 128952249 128952270 -89084888 + GC_rich Low_complexity Low_complexity 1 21 0 855 178 10 107 chr3 128952402 128952619 -89084539 + L1MB7 LINE L1 5927 6112 -62 1986 131 3 0 chr3 128952619 128952954 -89084204 - AluSx SINE Alu 0 336 1 855 178 10 107 chr3 128952954 128952989 -89084169 + L1MB7 LINE L1 6112 6149 -25 468 116 74 21 chr3 128954509 128954604 -89082554 + MER5A DNA MER1_type 9 108 -81 1552 182 61 3 chr3 128954621 128954917 -89082241 - L1MC1 LINE L1 -7 6326 6014 184 304 72 0 chr3 128955286 128955355 -89081803 + L2 LINE L2 3240 3313 0 386 286 68 8 chr3 128956915 128957048 -89080110 + MIR3 SINE MIR 43 183 -25 2301 108 0 10 chr3 128957995 128958300 -89078858 + AluSx SINE Alu 1 302 -10 653 218 0 0 chr3 128958557 128958667 -89078491 - AluJb SINE Alu -18 294 185 568 126 0 0 chr3 128959801 128959888 -89077270 + AluSg/x SINE Alu 216 302 -8 1270 242 43 60 chr3 128959912 128960330 -89076828 + Charlie2b DNA MER1_type 598 1008 -1774 269 287 53 0 chr3 128960348 128960442 -89076716 + Charlie2b DNA MER1_type 2635 2733 -49 2295 107 3 0 chr3 128960447 128960747 -89076411 - AluSg SINE Alu -9 301 1 231 88 0 0 chr3 128961148 128961182 -89075976 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1751 156 10 28 chr3 128961194 128961506 -89075652 + AluSx SINE Alu 1 307 0 22 70 0 0 chr3 128961656 128961699 -89075459 + AT_rich Low_complexity Low_complexity 1 43 0 253 261 8 25 chr3 128961758 128961877 -89075281 + L1M4 LINE L1 5100 5216 -930 27 0 0 0 chr3 128962664 128962691 -89074467 + AT_rich Low_complexity Low_complexity 1 27 0 4759 134 27 5 chr3 128962694 128963445 -89073713 - L1PA5 LINE L1 -1 6153 5387 257 312 161 0 chr3 128964090 128964183 -89072975 - L2 LINE L2 -18 3254 3147 298 274 103 8 chr3 128964371 128964488 -89072670 - MLT1L LTR MaLR -63 552 425 1003 293 147 33 chr3 128964997 128965151 -89072007 - MLT1L LTR MaLR -6 609 474 1696 207 3 0 chr3 128965151 128965455 -89071703 + AluJo SINE Alu 1 305 -7 1003 293 147 33 chr3 128965455 128965843 -89071315 - MLT1L LTR MaLR -141 474 5 574 189 204 48 chr3 128965935 128966205 -89070953 - MER5C DNA MER1_type 0 324 13 225 360 70 20 chr3 128966244 128966444 -89070714 + L2 LINE L2 2841 3050 -222 843 164 0 8 chr3 128966457 128966579 -89070579 - FLAM_C SINE Alu -8 125 5 195 324 167 10 chr3 128966724 128966826 -89070332 + L2 LINE L2 3151 3268 -4 399 302 7 27 chr3 128967215 128967364 -89069794 + MIR SINE MIR 7 152 -110 258 301 131 98 chr3 128967946 128968305 -89068853 + L2 LINE L2 2897 3267 -5 938 93 0 7 chr3 128968535 128968675 -89068483 + (TTTC)n Simple_repeat Simple_repeat 2 140 0 1888 132 0 14 chr3 128968677 128968957 -89068201 - AluSx SINE Alu -32 280 5 518 266 147 37 chr3 128969133 128969351 -89067807 + MIR SINE MIR 21 262 0 311 217 0 43 chr3 128969964 128970033 -89067125 + L2 LINE L2 3248 3313 0 22 35 0 0 chr3 128970206 128970235 -89066923 + AT_rich Low_complexity Low_complexity 1 29 0 273 206 254 0 chr3 128970332 128970395 -89066763 + L3 LINE CR1 1448 1526 -51 280 319 124 43 chr3 128970539 128970724 -89066434 - MIR SINE MIR -45 217 18 213 278 19 19 chr3 128970731 128970785 -89066373 - MIR3 SINE MIR -29 179 126 22 0 0 0 chr3 128971739 128971761 -89065397 + AT_rich Low_complexity Low_complexity 1 22 0 1242 154 0 33 chr3 128972213 128972427 -89064731 - AluJb SINE Alu -104 208 2 188 289 50 83 chr3 128972521 128972642 -89064516 + MIR3 SINE MIR 15 131 -77 1970 132 4 4 chr3 128972659 128972940 -89064218 + AluSg SINE Alu 1 281 -29 1771 239 44 30 chr3 128973018 128973521 -89063637 - L2 LINE L2 0 3313 2804 * 2978 244 70 32 chr3 128973491 128974370 -89062788 - L2 LINE L2 -734 2580 1668 256 308 32 0 chr3 128974583 128974666 -89062492 - MIR SINE MIR -85 123 36 211 290 116 0 chr3 128974871 128974940 -89062218 + MIR SINE MIR 184 260 -2 215 292 0 0 chr3 128975109 128975157 -89062001 - L2 LINE L2 -2 3270 3223 247 125 34 80 chr3 128976530 128976618 -89060540 + CT-rich Low_complexity Low_complexity 3 86 0 228 35 0 0 chr3 128976623 128976652 -89060506 + (CCCCG)n Simple_repeat Simple_repeat 1 29 0 278 352 80 8 chr3 128976774 128976899 -89060259 - L2 LINE L2 0 3272 3139 341 284 232 9 chr3 128977431 128977642 -89059516 + MIR SINE MIR 4 261 -1 1824 158 14 3 chr3 128978842 128979139 -89058019 - AluJo SINE Alu -12 300 1 182 335 101 22 chr3 128979708 128979887 -89057271 - L3b LINE CR1 -95 1488 1296 222 340 20 30 chr3 128980941 128981041 -89056117 + MER5B DNA MER1_type 1 99 -79 243 0 0 0 chr3 128981451 128981478 -89055680 + (CA)n Simple_repeat Simple_repeat 2 28 0 473 231 88 27 chr3 128983092 128983239 -89053919 - MLT1J LTR MaLR -336 175 20 381 379 102 47 chr3 128983307 128983563 -89053595 + L2 LINE L2 3002 3271 -1 565 313 40 0 chr3 128984619 128984795 -89052363 + MIR SINE MIR 56 238 -24 846 197 38 28 chr3 128984886 128985064 -89052094 + MER3 DNA MER1_type 1 132 -77 2255 97 7 3 chr3 128985066 128985365 -89051793 - AluSq SINE Alu -13 300 1 721 240 11 28 chr3 128985383 128985562 -89051596 - MER5B DNA MER1_type 0 178 3 190 352 117 40 chr3 128986105 128986352 -89050806 + L2 LINE L2 2712 2977 -337 1588 91 0 0 chr3 128987609 128987818 -89049340 + THE1B-int LTR MaLR 1372 1580 0 2229 116 21 63 chr3 128987818 128988198 -89048960 + THE1B LTR MaLR 1 364 0 2210 103 13 3 chr3 128988225 128988527 -89048631 - AluSx SINE Alu -2 310 6 2496 128 46 44 chr3 128988552 128988965 -89048193 - MLT2D LTR ERVL 0 414 1 452 198 0 0 chr3 128989033 128989119 -89048039 + L1MA10 LINE L1 6249 6334 0 501 352 157 20 chr3 128989392 128989838 -89047320 - L3 LINE CR1 -137 1440 934 2473 61 0 3 chr3 128990008 128990318 -89046840 - AluY SINE Alu -2 309 1 1377 158 4 21 chr3 128991356 128991590 -89045568 - AluJo SINE Alu -82 230 1 180 0 0 0 chr3 128991611 128991631 -89045527 + (TA)n Simple_repeat Simple_repeat 1 20 0 522 319 96 22 chr3 128992211 128992440 -89044718 - MIR SINE MIR -10 252 7 306 319 43 0 chr3 128993809 128993925 -89043233 - MER110-int LTR ERV1 -4183 464 344 1190 137 0 0 chr3 128995061 128995236 -89041922 + AluSg/x SINE Alu 129 303 -9 279 287 53 0 chr3 128995241 128995335 -89041823 - Charlie2 DNA MER1_type -49 2813 2715 1280 239 43 60 chr3 128995353 128995771 -89041387 - Charlie2b DNA MER1_type -1774 1008 598 523 153 0 0 chr3 128995797 128995882 -89041276 - AluSg/x SINE Alu -10 300 216 282 303 121 18 chr3 128996607 128996772 -89040386 - L2 LINE L2 -845 2469 2288 186 400 36 9 chr3 128997346 128997456 -89039702 - L2 LINE L2 -62 3210 3098 281 311 152 18 chr3 128997759 128997923 -89039235 + MIR SINE MIR 10 195 -67 1577 179 29 4 chr3 128999669 128999949 -89037209 - AluJo SINE Alu -25 287 1 270 0 0 0 chr3 128999949 128999979 -89037179 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 1646 164 25 21 chr3 128999979 129000260 -89036898 - AluSx SINE Alu -30 282 1 704 213 38 38 chr3 129000329 129000564 -89036594 - AluJb SINE Alu -13 299 65 195 323 31 0 chr3 129001226 129001291 -89035867 - MIR SINE MIR -87 121 55 219 233 0 0 chr3 129001686 129001729 -89035429 + CT-rich Low_complexity Low_complexity 1 43 0 8054 74 8 25 chr3 129002376 129003586 -89033572 + L1P LINE L1 2810 3999 -2147 279 133 0 0 chr3 129004316 129004361 -89032797 + (GA)n Simple_repeat Simple_repeat 1 45 0 2105 123 0 0 chr3 129005286 129005601 -89031557 - AluSx SINE Alu 0 315 1 3416 181 48 18 chr3 129106126 129107009 -88930149 + L1MB8 LINE L1 5127 6038 -140 1157 50 0 0 chr3 129107011 129107152 -88930006 - AluY SINE Alu -1 310 170 541 234 41 0 chr3 129107152 129107297 -88929861 + L1MB7 LINE L1 6034 6184 0 363 299 22 15 chr3 129107315 129107531 -88929627 + L1ME LINE L1 1046 1301 -5071 542 295 107 15 chr3 129107609 129108002 -88929156 + L1ME LINE L1 1557 1985 -4578 207 167 0 0 chr3 129108062 129108104 -88929054 + (TATG)n Simple_repeat Simple_repeat 3 44 0 279 0 0 0 chr3 129108461 129108492 -88928666 + (CA)n Simple_repeat Simple_repeat 2 32 0 904 132 18 150 chr3 129110653 129110695 -88926463 - MER69 DNA AcHobo -12 2514 2468 195 114 0 0 chr3 129110695 129110730 -88926428 + (TTTTA)n Simple_repeat Simple_repeat 3 37 0 1780 167 3 7 chr3 129110735 129111023 -88926135 - AluSq SINE Alu -26 287 1 904 132 18 150 chr3 129111023 129111056 -88926102 - MER69 DNA AcHobo -62 2464 2428 1703 166 10 21 chr3 129111056 129111188 -88925970 + AluJo SINE Alu 1 133 -179 1874 157 19 22 chr3 129111188 129111501 -88925657 + AluJb SINE Alu 1 312 0 1703 166 10 21 chr3 129111501 129111658 -88925500 + AluJo SINE Alu 133 287 -25 904 132 18 150 chr3 129111658 129111848 -88925310 - MER69 DNA AcHobo -98 2428 2278 1587 204 36 8 chr3 129111859 129112216 -88924942 + MLT1D LTR MaLR 1 367 -138 2037 139 79 0 chr3 129112422 129112775 -88924383 - MSTB LTR MaLR 0 426 46 1223 141 0 0 chr3 129112776 129112960 -88924198 - AluSx SINE Alu 0 312 129 1199 58 0 0 chr3 129113911 129114048 -88923110 - AluSx SINE Alu -176 137 1 387 107 0 18 chr3 129114048 129114104 -88923054 - MSTB LTR MaLR -371 55 1 4102 168 62 2 chr3 129114958 129115750 -88921408 + L1MB2 LINE L1 5328 6166 -5 28 29 0 0 chr3 129115823 129115858 -88921300 + AT_rich Low_complexity Low_complexity 1 35 0 1272 159 53 20 chr3 129116046 129116291 -88920867 + THE1C LTR MaLR 1 253 -122 354 65 0 16 chr3 129116394 129116456 -88920702 + L1MA3 LINE L1 6245 6305 0 597 238 180 6 chr3 129119077 129119249 -88917909 + MIR SINE MIR 49 250 -12 593 319 55 6 chr3 129119348 129119530 -88917628 - MIR SINE MIR -24 238 48 2341 79 0 0 chr3 129119713 129120017 -88917141 + AluY SINE Alu 1 304 -7 2646 201 22 24 chr3 129120298 129120834 -88916324 + MLT1F LTR MaLR 1 535 -7 440 214 80 0 chr3 129121790 129121902 -88915256 - MER3 DNA MER1_type -8 201 81 2001 111 16 23 chr3 129122029 129122335 -88914823 - AluSx SINE Alu -8 304 1 230 215 168 65 chr3 129123570 129123677 -88913481 + L1ME LINE L1 5531 5648 -473 375 283 0 28 chr3 129125199 129125305 -88911853 + L3 LINE CR1 628 730 -847 774 226 12 24 chr3 129126574 129126742 -88910416 - MER58A DNA MER1_type -2 222 57 342 219 0 0 chr3 129127633 129127706 -88909452 - MER52A LTR ERV1 -1 1754 1682 * 5507 181 44 37 chr3 129127696 129128884 -88908274 - MER52A LTR ERV1 -559 1196 1 710 278 79 37 chr3 129128885 129129126 -88908032 + MIR SINE MIR 7 257 -5 584 320 6 23 chr3 129129552 129129727 -88907431 + MER5B DNA MER1_type 1 172 -6 348 269 46 62 chr3 129129948 129130078 -88907080 + L2 LINE L2 3140 3267 -5 31 26 0 0 chr3 129130410 129130448 -88906710 + AT_rich Low_complexity Low_complexity 1 38 0 419 238 25 126 chr3 129130971 129131379 -88905779 + L1MEc LINE L1 2144 2479 -3736 2414 222 59 99 chr3 129131569 129132289 -88904869 + L1MB4 LINE L1 3924 4580 -1566 1326 167 39 66 chr3 129132289 129132594 -88904564 + AluJo SINE Alu 1 297 -15 2414 222 59 99 chr3 129132594 129133069 -88904089 + L1MB4 LINE L1 4580 5072 -1074 199 281 53 0 chr3 129133269 129133326 -88903832 - MIR SINE MIR -111 151 92 3626 233 64 33 chr3 129133334 129134089 -88903069 + L1M4 LINE L1 1 732 -5914 393 117 0 0 chr3 129134089 129134149 -88903009 + (TA)n Simple_repeat Simple_repeat 2 61 0 2231 113 0 0 chr3 129134149 129134450 -88902708 - AluSx SINE Alu -11 301 1 3626 233 64 33 chr3 129134450 129135462 -88901696 + L1M4 LINE L1 731 1835 -4811 935 157 37 68 chr3 129135463 129135654 -88901504 + L1MB4 LINE L1 5441 5625 -555 1605 149 124 34 chr3 129135655 129135977 -88901181 - MLT1A1 LTR MaLR 0 365 15 1805 173 117 0 chr3 129135977 129136346 -88900812 + L1MB4 LINE L1 5622 6033 -147 23 54 0 0 chr3 129137279 129137316 -88899842 + AT_rich Low_complexity Low_complexity 1 37 0 297 75 0 0 chr3 129137715 129137755 -88899403 + (CA)n Simple_repeat Simple_repeat 1 40 0 1778 153 20 3 chr3 129139877 129140171 -88896987 + AluJb SINE Alu 1 299 -13 21 36 0 0 chr3 129140193 129140221 -88896937 + AT_rich Low_complexity Low_complexity 1 28 0 1740 170 0 26 chr3 129141629 129141935 -88895223 + AluJo SINE Alu 1 298 -14 780 173 8 8 chr3 129145335 129145462 -88891696 + MER58A DNA MER1_type 3 129 0 629 146 0 0 chr3 129145538 129145634 -88891524 + MER58A DNA MER1_type 129 224 0 53 30 0 0 chr3 129146298 129146365 -88890793 + GC_rich Low_complexity Low_complexity 1 67 0 44 123 0 0 chr3 129146407 129146472 -88890686 + GC_rich Low_complexity Low_complexity 1 65 0 1903 211 31 22 chr3 129146506 129146962 -88890196 - L1M4 LINE L1 -1035 5111 4652 514 126 0 23 chr3 129147045 129147132 -88890026 - BC200 scRNA scRNA -51 149 65 324 284 12 12 chr3 129147416 129147497 -88889661 + MIR SINE MIR 2 82 -180 1149 221 96 72 chr3 129148089 129148618 -88888540 - MLT1H1 LTR MaLR -2 553 15 186 315 19 19 chr3 129149271 129149325 -88887833 + L2 LINE L2 3258 3311 -2 941 165 6 6 chr3 129149361 129149519 -88887639 + MLT1A1 LTR MaLR 1 158 -207 1440 144 38 19 chr3 129149519 129149782 -88887376 + AluJb SINE Alu 1 268 -44 255 31 0 0 chr3 129149818 129149850 -88887308 + (GA)n Simple_repeat Simple_repeat 2 33 0 1255 182 14 18 chr3 129149855 129150075 -88887083 + MLT1A1 LTR MaLR 147 365 0 1777 122 7 14 chr3 129150230 129150517 -88886641 - AluSx SINE Alu -16 296 12 384 245 210 25 chr3 129150528 129150728 -88886430 - L1MEc LINE L1 -4014 2420 2176 616 333 88 71 chr3 129150730 129151019 -88886139 - L1MEc LINE L1 -5051 1365 1082 237 33 0 0 chr3 129151019 129151049 -88886109 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 616 333 88 71 chr3 129151049 129151189 -88885969 - L1MEc LINE L1 -5334 1082 946 1915 112 0 77 chr3 129151189 129151527 -88885631 + AluSx SINE Alu 1 312 0 616 333 88 71 chr3 129151527 129151789 -88885369 - L1MEc LINE L1 -5470 946 661 1523 209 0 3 chr3 129152065 129152366 -88884792 - AluJo SINE Alu -12 300 1 503 275 263 9 chr3 129153881 129154227 -88882931 - MLT1L LTR MaLR -7 608 175 348 339 99 26 chr3 129154421 129154654 -88882504 + MIR SINE MIR 2 251 -11 27 0 0 0 chr3 129156137 129156164 -88880994 + GC_rich Low_complexity Low_complexity 1 27 0 649 304 74 9 chr3 129156993 129157210 -88879948 - MIR SINE MIR -12 250 20 306 304 104 0 chr3 129157685 129157810 -88879348 - MIR SINE MIR -102 160 23 492 184 319 7 chr3 129157841 129157982 -88879176 + MER5A DNA MER1_type 5 189 0 341 280 112 8 chr3 129159825 129159950 -88877208 - MIR SINE MIR -17 191 53 225 357 31 10 chr3 129161955 129162053 -88875105 - MIR SINE MIR -151 111 12 1607 174 7 16 chr3 129162614 129162919 -88874239 + AluJo SINE Alu 1 302 -10 215 263 199 39 chr3 129163919 129164075 -88873083 - L2 LINE L2 -3 3310 3130 2070 102 0 0 chr3 129164789 129165082 -88872076 + AluY SINE Alu 3 295 -16 189 0 0 0 chr3 129165895 129165916 -88871242 + (T)n Simple_repeat Simple_repeat 1 21 0 2011 107 38 0 chr3 129166428 129166718 -88870440 + AluSx SINE Alu 1 301 -11 915 168 0 0 chr3 129167260 129167403 -88869755 + MER52A LTR ERV1 1031 1173 -582 * 1902 146 44 38 chr3 129167400 129167742 -88869416 + THE1B LTR MaLR 21 364 0 490 216 196 7 chr3 129167948 129168096 -88869062 - MER5A DNA MER1_type -1 188 13 1728 173 3 3 chr3 129168277 129168584 -88868574 + AluJb SINE Alu 1 307 -5 1529 175 3 18 chr3 129168597 129168883 -88868275 + AluJo SINE Alu 1 282 -30 26 0 0 0 chr3 129168889 129168915 -88868243 + AT_rich Low_complexity Low_complexity 1 26 0 303 275 38 0 chr3 129169147 129169227 -88867931 + L1MCa LINE L1 1986 2068 -4358 369 310 0 0 chr3 129169157 129169183 -88867975 + (TA)n Simple_repeat Simple_repeat 1 111 0 304 224 24 47 chr3 129169183 129169268 -88867890 - L1MCa LINE L1 -4349 2077 1995 497 16 16 0 chr3 129169295 129169357 -88867801 + (CA)n Simple_repeat Simple_repeat 2 64 0 231 228 119 0 chr3 129169636 129169713 -88867445 - MIR SINE MIR -110 152 65 2038 142 7 0 chr3 129169713 129170009 -88867149 - AluSx SINE Alu -14 298 1 270 236 0 45 chr3 129170974 129171063 -88866095 + L1M4 LINE L1 3915 3999 -2147 874 290 168 16 chr3 129171181 129171757 -88865401 + L1MC4a LINE L1 41 704 -5415 288 318 0 0 chr3 129171807 129171870 -88865288 - MER91B DNA MER1_type -127 63 1 301 357 13 0 chr3 129171874 129172101 -88865057 + L1MC4a LINE L1 4073 4302 -1827 318 343 88 0 chr3 129172142 129172323 -88864835 + L1MC4a LINE L1 4739 4935 -1194 682 274 96 23 chr3 129172531 129173132 -88864026 + L1MC4a LINE L1 5201 5758 -395 1813 105 11 11 chr3 129173261 129173547 -88863611 - L1P LINE L1 -3449 2697 2412 1212 52 0 0 chr3 129173547 129173683 -88863475 - AluSq/x SINE Alu -176 137 2 2277 96 3 0 chr3 129173930 129174223 -88862935 + AluSx SINE Alu 1 294 -18 231 250 6 25 chr3 129174438 129174518 -88862640 + AluSq/x SINE Alu 54 113 -189 22 70 0 0 chr3 129174696 129174739 -88862419 + AT_rich Low_complexity Low_complexity 1 43 0 2371 100 3 0 chr3 129176621 129176920 -88860238 + AluSp SINE Alu 1 300 -13 216 0 0 0 chr3 129178855 129178879 -88858279 + (TA)n Simple_repeat Simple_repeat 1 24 0 2651 33 3 0 chr3 129180077 129180384 -88856774 - AluY SINE Alu -3 308 1 2407 115 8 8 chr3 129180605 129180996 -88856162 + Tigger1 DNA MER2_type 1131 1521 -897 753 235 24 0 chr3 129181007 129181177 -88855981 - L1ME LINE L1 -417 5753 5580 213 369 39 0 chr3 129181628 129181731 -88855427 + MIR SINE MIR 22 128 -134 204 182 0 0 chr3 129181941 129181985 -88855173 + (TA)n Simple_repeat Simple_repeat 2 45 0 1087 251 23 7 chr3 129182004 129182311 -88854847 + Zaphod DNA AcHobo 3720 4031 0 2686 128 69 70 chr3 129182462 129183102 -88854056 - L1MA8 LINE L1 -6 6285 5647 1062 170 5 0 chr3 129183429 129183635 -88853523 - L1MB7 LINE L1 -23 6161 5955 1993 148 0 10 chr3 129183640 129183945 -88853213 - AluSx SINE Alu -10 302 1 974 278 50 6 chr3 129184003 129184603 -88852555 - L1MEc LINE L1 -3597 2618 2030 735 269 56 54 chr3 129184818 129185261 -88851897 - L1MEc LINE L1 -4641 1755 1312 900 214 43 89 chr3 129185592 129186012 -88851146 - MLT1B LTR MaLR 0 379 6 2015 281 49 3 chr3 129186018 129186587 -88850571 - MLT1B-int LTR MaLR 0 1735 1141 1973 199 5 0 chr3 129186797 129187189 -88849969 - MLT1B-int LTR MaLR -710 661 268 621 146 146 0 chr3 129187160 129187297 -88849861 - MLT1B-int LTR MaLR -1574 161 5 * 585 149 0 0 chr3 129187305 129187399 -88849759 - MLT1B LTR MaLR -4 386 293 1291 129 0 0 chr3 129187440 129187641 -88849517 + L1PB1 LINE L1 5950 6150 -1 472 363 96 11 chr3 129187642 129187912 -88849246 - L1MEc LINE L1 -5306 899 607 24 53 0 0 chr3 129188232 129188270 -88848888 + AT_rich Low_complexity Low_complexity 1 38 0 223 342 67 42 chr3 129188997 129189117 -88848041 - MIR3 SINE MIR -83 125 3 664 240 97 0 chr3 129190960 129191135 -88846023 - MIR SINE MIR -2 260 69 1812 168 7 7 chr3 129191768 129192065 -88845093 - AluJb SINE Alu -15 297 1 641 250 68 40 chr3 129192342 129192594 -88844564 + L1MC/D LINE L1 5539 5797 -2011 26 0 0 0 chr3 129193104 129193130 -88844028 + AT_rich Low_complexity Low_complexity 1 26 0 926 293 127 8 chr3 129194542 129194904 -88842254 + MLT1J LTR MaLR 1 405 -106 249 347 28 28 chr3 129195259 129195403 -88841755 + L2 LINE L2 3163 3306 -7 213 319 92 50 chr3 129195537 129195656 -88841502 - L2 LINE L2 -11 3302 3179 543 293 94 23 chr3 129196490 129196756 -88840402 + L2 LINE L2 2230 2514 -800 201 351 0 0 chr3 129196758 129196832 -88840326 + L2 LINE L2 2632 2705 -609 311 269 0 39 chr3 129196910 129197014 -88840144 + L2 LINE L2 3196 3295 -18 2144 85 64 0 chr3 129197887 129198170 -88838988 + AluSx SINE Alu 1 301 -11 1760 144 12 0 chr3 129200179 129200429 -88836729 + AluSx SINE Alu 27 279 -33 360 0 0 0 chr3 129200429 129200469 -88836689 + (CA)n Simple_repeat Simple_repeat 1 40 0 224 276 167 32 chr3 129201394 129201550 -88835608 + MIR SINE MIR 86 262 0 185 305 34 68 chr3 129202101 129202219 -88834939 - L2 LINE L2 -11 3302 3189 1721 149 4 8 chr3 129202656 129202917 -88834241 + AluSx SINE Alu 1 260 -52 598 130 0 0 chr3 129203018 129203110 -88834048 + AluSg/x SINE Alu 219 310 0 655 171 9 0 chr3 129204124 129204235 -88832923 - L1PB4 LINE L1 -7 6149 6038 1513 90 9 24 chr3 129204391 129204602 -88832556 + AluSp SINE Alu 83 290 -23 572 309 76 22 chr3 129204744 129205245 -88831913 + L1M4 LINE L1 3490 4017 -2129 1013 193 0 0 chr3 129205461 129205648 -88831510 + MER5A DNA MER1_type 1 187 -2 182 152 0 0 chr3 129208144 129208177 -88828981 + L2 LINE L2 3239 3271 -1 1306 178 104 17 chr3 129208494 129208899 -88828259 + MER106B DNA MER1_type 289 728 -331 1681 157 41 27 chr3 129208901 129209195 -88827963 - AluJo SINE Alu -14 298 1 810 194 22 35 chr3 129209215 129209442 -88827716 + MER106B DNA MER1_type 833 1056 -3 441 0 0 0 chr3 129209499 129209548 -88827610 + (CA)n Simple_repeat Simple_repeat 1 49 0 255 175 0 0 chr3 129210339 129210379 -88826779 + L2 LINE L2 3262 3301 -12 2133 137 10 0 chr3 129210478 129210785 -88826373 - AluSx SINE Alu -2 310 1 184 299 28 89 chr3 129210884 129211098 -88826060 + L2 LINE L2 2539 2739 -575 266 263 116 76 chr3 129211118 129211342 -88825816 - L2 LINE L2 0 3313 3081 458 269 9 9 chr3 129211626 129211734 -88825424 + MIR SINE MIR 118 225 -37 713 189 80 11 chr3 129211873 129212048 -88825110 - MER5A DNA MER1_type 0 189 3 270 159 0 0 chr3 129212050 129212094 -88825064 + MIR SINE MIR 209 252 -10 399 41 0 0 chr3 129212245 129212294 -88824864 + (CAT)n Simple_repeat Simple_repeat 2 50 0 187 388 62 0 chr3 129212444 129212524 -88824634 + L2 LINE L2 2981 3065 -207 288 336 50 25 chr3 129212674 129212793 -88824365 + L2 LINE L2 3142 3263 -9 1947 153 0 10 chr3 129214520 129214814 -88822344 - AluJb SINE Alu -10 302 12 22 35 0 0 chr3 129215190 129215219 -88821939 + AT_rich Low_complexity Low_complexity 1 29 0 205 320 80 60 chr3 129215454 129215500 -88821658 + L3 LINE CR1 1333 1377 -200 2287 72 3 36 chr3 129215500 129215807 -88821351 - AluY SINE Alu -14 297 1 205 320 80 60 chr3 129215807 129215910 -88821248 + L3 LINE CR1 1377 1485 -92 207 78 59 0 chr3 129216202 129216253 -88820905 + (TA)n Simple_repeat Simple_repeat 1 54 0 252 0 0 0 chr3 129216285 129216313 -88820845 + (TA)n Simple_repeat Simple_repeat 2 29 0 1972 138 13 3 chr3 129216347 129216645 -88820513 + AluSx SINE Alu 1 301 -11 7454 126 24 12 chr3 129217441 129218847 -88818311 - L1P LINE L1 -1994 4152 2723 963 207 152 13 chr3 129218847 129219228 -88817930 - L1MCa LINE L1 -4224 2202 1769 2118 146 2 54 chr3 129219254 129219463 -88817695 - L1MB7 LINE L1 -25 6159 5982 2354 72 0 16 chr3 129219463 129219769 -88817389 - AluY SINE Alu -10 301 1 2118 146 2 54 chr3 129219769 129219984 -88817174 - L1MB7 LINE L1 -202 5982 5757 336 215 107 74 chr3 129220120 129220241 -88816917 - L1ME3 LINE L1 -77 6085 5961 347 263 51 6 chr3 129220307 129220462 -88816696 - L1ME3A LINE L1 -208 5962 5801 2734 189 73 73 chr3 129220462 129221272 -88815886 - Cheshire DNA MER1_type -1 2419 1610 22 88 0 0 chr3 129221330 129221387 -88815771 + GC_rich Low_complexity Low_complexity 1 57 0 4145 209 37 8 chr3 129221542 129222547 -88814611 + L1 LINE L1 2464 3497 -2649 22 0 0 0 chr3 129222707 129222729 -88814429 + GC_rich Low_complexity Low_complexity 1 22 0 1278 154 27 35 chr3 129223110 129223370 -88813788 + AluSx SINE Alu 39 296 -16 200 208 21 0 chr3 129225647 129225695 -88811463 + (CATA)n Simple_repeat Simple_repeat 3 51 0 472 42 14 0 chr3 129225702 129225773 -88811385 - MER2 DNA MER2_type -146 199 128 813 141 15 0 chr3 129225774 129225909 -88811249 + AluSg/x SINE Alu 176 312 0 758 191 8 0 chr3 129225909 129226040 -88811118 - MER2 DNA MER2_type -213 132 1 799 174 56 46 chr3 129227094 129227290 -88809868 + L1MB5 LINE L1 5977 6174 0 283 205 94 77 chr3 129227392 129227509 -88809649 + MER94 DNA DNA 12 130 -4 1196 110 6 0 chr3 129228210 129228396 -88808762 - AluSp SINE Alu 0 307 121 7051 59 29 7 chr3 129228410 129230134 -88807024 - L1PA7 LINE L1 -1 6153 4412 23 0 0 0 chr3 129231111 129231134 -88806024 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr3 129232553 129232582 -88804576 + AT_rich Low_complexity Low_complexity 1 29 0 288 0 0 0 chr3 129232635 129232667 -88804491 + (TA)n Simple_repeat Simple_repeat 2 33 0 2547 50 7 0 chr3 129232667 129232968 -88804190 - AluY SINE Alu -8 303 1 21 36 0 0 chr3 129234984 129235012 -88802146 + AT_rich Low_complexity Low_complexity 1 28 0 226 130 19 19 chr3 129235250 129235304 -88801854 + A-rich Low_complexity Low_complexity 2 55 0 214 140 20 20 chr3 129235316 129235366 -88801792 + GA-rich Low_complexity Low_complexity 3 52 0 1576 98 0 0 chr3 129236248 129236451 -88800707 + AluSg/x SINE Alu 108 310 -2 914 191 104 11 chr3 129236847 129237030 -88800128 - MER6B DNA MER2_type 0 210 11 216 369 81 27 chr3 129237512 129237623 -88799535 + L2 LINE L2 3154 3270 -2 24 19 5 0 chr3 129239244 129239302 -88797856 + GC_rich Low_complexity Low_complexity 1 31 0 834 227 93 2 chr3 129239439 129239674 -88797484 - L1ME LINE L1 -445 5953 5699 1610 250 67 13 chr3 129239683 129240294 -88796864 - L1ME LINE L1 -3873 2690 2047 4743 60 26 9 chr3 129240294 129241408 -88795750 - MER11A LTR ERVK 0 1266 1 812 264 121 40 chr3 129241408 129242209 -88794949 - L1ME LINE L1 -4511 2052 1015 409 162 68 68 chr3 129242215 129242332 -88794826 - L1ME LINE L1 -5452 1111 995 5710 169 38 19 chr3 129242627 129244353 -88792805 - L1PA16 LINE L1 -4 6162 4389 405 0 0 0 chr3 129244353 129244398 -88792760 + (TTTTA)n Simple_repeat Simple_repeat 3 47 0 5710 169 38 19 chr3 129244398 129244770 -88792388 - L1PA16 LINE L1 -1777 4389 4026 331 290 181 16 chr3 129245043 129245236 -88791922 + MIR SINE MIR 35 259 -3 208 330 161 0 chr3 129245885 129246003 -88791155 + MIR3 SINE MIR 45 181 -27 543 157 87 17 chr3 129246057 129246172 -88790986 + MER58B DNA MER1_type 219 341 0 255 238 70 116 chr3 129247091 129247263 -88789895 + L1MC4 LINE L1 7864 8027 -15 2344 117 5 37 chr3 129247559 129247935 -88789223 - THE1B LTR MaLR 0 364 1 575 247 95 22 chr3 129248401 129248632 -88788526 - L1ME3A LINE L1 -220 5950 5703 6088 116 46 27 chr3 129249186 129250175 -88786983 + L1MA3 LINE L1 5141 6165 -140 2189 105 0 3 chr3 129250175 129250469 -88786689 + AluY SINE Alu 1 293 -18 6088 116 46 27 chr3 129250469 129250607 -88786551 + L1MA3 LINE L1 6165 6299 -6 2766 208 92 11 chr3 129250617 129251531 -88785627 - L1ME1 LINE L1 -31 6135 5142 188 291 175 29 chr3 129251945 129252048 -88785110 + L2 LINE L2 3196 3313 0 1098 169 163 20 chr3 129252092 129252393 -88784765 - MER2 DNA MER2_type 0 344 1 1979 199 31 5 chr3 129252626 129253012 -88784146 - MSTD LTR MaLR 0 396 1 376 333 10 0 chr3 129254003 129254102 -88783056 - MIR3 SINE MIR -54 154 55 441 0 0 0 chr3 129254106 129254155 -88783003 + (TG)n Simple_repeat Simple_repeat 2 50 0 238 267 103 0 chr3 129254853 129254969 -88782189 + L1ME4a LINE L1 5980 6107 -14 22 0 0 0 chr3 129255100 129255122 -88782036 + AT_rich Low_complexity Low_complexity 1 22 0 1460 139 51 24 chr3 129255152 129255447 -88781711 + MER44D DNA MER2_type 37 609 0 1781 186 0 0 chr3 129257027 129257312 -88779846 - MER44D DNA MER2_type -420 285 1 370 278 0 0 chr3 129257324 129257421 -88779737 + MIR SINE MIR 147 243 -19 2143 94 0 0 chr3 129257758 129258062 -88779096 + AluY SINE Alu 5 308 0 243 179 54 18 chr3 129258409 129258465 -88778693 - Tigger7 DNA MER2_type -342 2245 2188 * 262 32 0 0 chr3 129258463 129258494 -88778664 - MSTC LTR MaLR -68 360 330 2883 3 0 0 chr3 129258578 129258887 -88778271 + AluYa5 SINE Alu 1 309 -2 2337 90 0 34 chr3 129259662 129259985 -88777173 - AluSx SINE Alu 0 312 1 188 143 0 0 chr3 129260367 129260395 -88776763 + L2 LINE L2 3231 3258 -14 13940 124 48 24 chr3 129261964 129264323 -88772835 + Tigger1 DNA MER2_type 3 2418 0 313 306 119 6 chr3 129264928 129265088 -88772070 + MIR3 SINE MIR 17 194 -14 6571 40 1 0 chr3 129265235 129266027 -88771131 - L1PA5 LINE L1 -9 6145 5353 18428 62 6 0 chr3 129266027 129268464 -88768694 + L1PA5 LINE L1 2882 5331 -815 1521 126 9 9 chr3 129268566 129268796 -88768362 + AluSq SINE Alu 1 230 -83 490 242 0 10 chr3 129269281 129269380 -88767778 + Tigger3(Golem) DNA MER2_type 2941 3038 0 3823 7 0 0 chr3 129269608 129270038 -88767120 + L1HS LINE L1 5726 6155 0 180 77 0 0 chr3 129270164 129270190 -88766968 + (T)n Simple_repeat Simple_repeat 1 26 0 479 305 50 7 chr3 129271063 129271204 -88765954 + MIR3 SINE MIR 31 177 -31 569 221 25 8 chr3 129272251 129272373 -88764785 + MER94 DNA DNA 1 124 -10 182 336 84 49 chr3 129273155 129273298 -88763860 - MIR3 SINE MIR -8 200 53 327 274 10 49 chr3 129273435 129273537 -88763621 + L2 LINE L2 3189 3286 -27 262 183 14 14 chr3 129273641 129273712 -88763446 + (TTTAA)n Simple_repeat Simple_repeat 1 71 0 21 57 0 0 chr3 129273862 129273897 -88763261 + AT_rich Low_complexity Low_complexity 1 35 0 562 313 106 9 chr3 129274050 129274277 -88762881 - L3 LINE CR1 -8 1569 1321 1465 160 83 44 chr3 129274633 129274971 -88762187 - MER58D DNA MER1_type 0 386 36 1624 179 4 0 chr3 129275886 129276165 -88760993 + AluJb SINE Alu 1 280 -32 24 0 0 0 chr3 129276177 129276201 -88760957 + AT_rich Low_complexity Low_complexity 1 24 0 1840 163 14 0 chr3 129276204 129276493 -88760665 + AluSx SINE Alu 1 293 -19 202 189 0 0 chr3 129276524 129276561 -88760597 + CT-rich Low_complexity Low_complexity 2 38 0 27 62 0 0 chr3 129278023 129278071 -88759087 + AT_rich Low_complexity Low_complexity 1 48 0 27 0 0 0 chr3 129278492 129278519 -88758639 + AT_rich Low_complexity Low_complexity 1 27 0 23 78 0 0 chr3 129278717 129278768 -88758390 + AT_rich Low_complexity Low_complexity 1 51 0 431 309 0 0 chr3 129279396 129279519 -88757639 - MIR SINE MIR -1 261 139 4121 157 38 1 chr3 129279529 129280209 -88756949 + MER44D DNA MER2_type 1 705 0 1825 183 16 16 chr3 129280563 129280929 -88756229 + MER47A DNA MER2_type 1 366 0 511 121 0 11 chr3 129281076 129281167 -88755991 - AluS SINE Alu 0 310 221 1648 182 16 10 chr3 129282713 129282753 -88754405 + L1MB7 LINE L1 4679 4717 -1429 1986 138 0 13 chr3 129282753 129283057 -88754101 - AluJb SINE Alu -12 300 1 1648 182 16 10 chr3 129283057 129283323 -88753835 + L1MB7 LINE L1 4717 4987 -1159 3017 170 37 15 chr3 129283330 129283981 -88753177 + L1MA7 LINE L1 5509 6283 -8 1192 188 63 8 chr3 129283989 129285020 -88752138 + L1MB7 LINE L1 4982 6179 -5 1679 167 35 3 chr3 129285594 129285876 -88751282 + AluSx SINE Alu 2 292 -20 226 339 33 25 chr3 129286383 129286504 -88750654 - L2 LINE L2 -188 3084 2963 198 216 59 0 chr3 129286656 129286707 -88750451 - L2 LINE L2 -559 2755 2702 1624 164 87 105 chr3 129287129 129287641 -88749517 - L1MC2 LINE L1 -92 7693 6171 254 262 36 36 chr3 129287644 129287728 -88749430 - MLT1F1 LTR MaLR -434 133 50 687 229 203 0 chr3 129287729 129287921 -88749237 - L1MC3 LINE L1 -669 7116 6886 2074 112 0 0 chr3 129287958 129288244 -88748914 - AluSx SINE Alu -25 287 2 248 191 48 119 chr3 129288244 129288328 -88748830 - L1MC3 LINE L1 -884 6901 6824 281 262 91 27 chr3 129288575 129288762 -88748396 - L1MC3 LINE L1 -2319 5489 5291 1535 143 53 8 chr3 129288767 129289012 -88748146 - AluSq SINE Alu -57 256 1 23 33 0 0 chr3 129289305 129289335 -88747823 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr3 129290172 129290200 -88746958 + AT_rich Low_complexity Low_complexity 1 28 0 1923 144 10 0 chr3 129290200 129290506 -88746652 - AluSx SINE Alu -3 309 1 622 337 84 36 chr3 129290919 129291337 -88745821 - L3 LINE CR1 -439 1138 701 298 206 130 54 chr3 129291570 129291662 -88745496 - L3 LINE CR1 -916 661 563 30 0 0 0 chr3 129291666 129291696 -88745462 + AT_rich Low_complexity Low_complexity 1 30 0 441 95 0 0 chr3 129291696 129291759 -88745399 + (TG)n Simple_repeat Simple_repeat 2 64 0 1516 167 7 51 chr3 129291761 129291920 -88745238 - AluJb SINE Alu -30 282 140 2282 81 10 0 chr3 129291920 129292218 -88744940 - AluSp SINE Alu -12 301 1 1516 167 7 51 chr3 129292218 129292351 -88744807 - AluJb SINE Alu -172 140 3 679 301 39 39 chr3 129292877 129293136 -88744022 - MIR SINE MIR -3 259 1 2464 77 0 0 chr3 129293204 129293515 -88743643 - AluY SINE Alu 0 311 1 23 0 0 0 chr3 129295005 129295028 -88742130 + AT_rich Low_complexity Low_complexity 1 23 0 803 231 0 0 chr3 129295262 129295418 -88741740 - MIR SINE MIR -25 237 82 1756 128 14 11 chr3 129295534 129295815 -88741343 + AluSx SINE Alu 1 282 -30 188 33 0 33 chr3 129295822 129295852 -88741306 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 187 266 139 13 chr3 129295986 129296065 -88741093 - MIR SINE MIR -64 198 110 261 83 0 0 chr3 129296862 129296898 -88740260 + (A)n Simple_repeat Simple_repeat 1 36 0 1210 274 120 68 chr3 129297036 129297193 -88739965 + L1MC4a LINE L1 5673 5820 -1988 180 0 0 0 chr3 129297193 129297213 -88739945 + (CA)n Simple_repeat Simple_repeat 2 21 0 1210 274 120 68 chr3 129297213 129297596 -88739562 + L1MC4a LINE L1 5820 6182 -1626 1833 154 3 14 chr3 129297596 129297888 -88739270 - AluSx SINE Alu -23 289 1 1210 274 120 68 chr3 129297888 129298448 -88738710 + L1MC4a LINE L1 6182 6831 -977 1905 214 80 30 chr3 129298498 129299196 -88737962 + L1MC5 LINE L1 6971 7703 -258 1883 132 4 0 chr3 129299201 129299473 -88737685 + AluSx SINE Alu 1 273 -39 198 0 0 0 chr3 129299474 129299496 -88737662 + (GGAA)n Simple_repeat Simple_repeat 2 23 0 * 242 71 0 24 chr3 129299495 129299537 -88737621 + (TAGG)n Simple_repeat Simple_repeat 2 42 0 8957 116 98 33 chr3 129300196 129301814 -88735344 + Tigger1 DNA MER2_type 695 2418 0 1665 156 30 7 chr3 129302785 129303086 -88734072 + AluJb SINE Alu 1 308 -4 625 176 91 91 chr3 129303217 129303404 -88733754 - Charlie1a DNA MER1_type -1267 188 2 1969 234 43 26 chr3 129304224 129304365 -88732793 - L1M4 LINE L1 -3085 3061 2924 1849 173 129 16 chr3 129304365 129304753 -88732405 - MSTB1 LTR MaLR 0 432 1 1969 234 43 26 chr3 129304753 129305257 -88731901 - L1M4 LINE L1 -3222 2924 2405 2238 102 0 3 chr3 129305272 129305565 -88731593 + AluSx SINE Alu 1 292 -20 280 118 29 0 chr3 129305565 129305633 -88731525 + (TA)n Simple_repeat Simple_repeat 1 70 0 2013 201 58 61 chr3 129305640 129306243 -88730915 - L1M4 LINE L1 -1976 4170 3570 914 134 0 20 chr3 129307145 129307294 -88729864 - AluJo SINE Alu -166 146 1 335 345 0 8 chr3 129307308 129307427 -88729731 - L2 LINE L2 -2084 1230 1113 852 208 0 0 chr3 129307447 129307596 -88729562 - MER58A DNA MER1_type -38 186 38 338 181 11 32 chr3 129307632 129307726 -88729432 - L2 LINE L2 -2271 1043 952 461 247 110 19 chr3 129308346 129308500 -88728658 - MIR3 SINE MIR -32 176 9 207 0 0 0 chr3 129309798 129309821 -88727337 + (TAA)n Simple_repeat Simple_repeat 1 23 0 382 75 27 68 chr3 129309869 129310016 -88727142 + (TA)n Simple_repeat Simple_repeat 2 142 0 264 59 0 0 chr3 129310053 129310087 -88727071 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 974 79 0 0 chr3 129310199 129310326 -88726832 + (C)n Simple_repeat Simple_repeat 1 127 0 219 174 52 52 chr3 129310327 129310482 -88726676 + (CCGCG)n Simple_repeat Simple_repeat 5 159 0 231 218 91 0 chr3 129313739 129313794 -88723364 + L1MC4 LINE L1 6644 6703 -1339 * 351 268 114 34 chr3 129313785 129314164 -88722994 - L1ME4a LINE L1 -157 5964 5541 482 279 75 4 chr3 129315292 129315436 -88721722 - L1ME2 LINE L1 -8 6156 6018 305 181 361 0 chr3 129315436 129315519 -88721639 + MER81 DNA DNA 1 113 -1 740 234 81 0 chr3 129315521 129315718 -88721440 - L1ME1 LINE L1 -145 6021 5809 1787 251 16 37 chr3 129317812 129318386 -88718772 + L1M4 LINE L1 3393 3954 -2192 240 236 28 0 chr3 129318459 129318531 -88718627 + L1M4 LINE L1 4322 4395 -1751 23 0 0 0 chr3 129318775 129318798 -88718360 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr3 129319643 129319668 -88717490 + AT_rich Low_complexity Low_complexity 1 25 0 315 238 108 56 chr3 129320675 129320906 -88716252 + L1M4 LINE L1 4338 4580 -1566 923 260 69 48 chr3 129321316 129321693 -88715465 + L2 LINE L2 2928 3312 -1 407 91 91 0 chr3 129321734 129321822 -88715336 + L1MA9 LINE L1 6217 6312 0 1346 181 146 16 chr3 129322711 129323020 -88714138 - MER47A DNA MER2_type -13 353 5 470 152 9 38 chr3 129323024 129323115 -88714043 - L1 LINE L1 -2138 4008 3919 2272 116 3 0 chr3 129323115 129323426 -88713732 - AluSx SINE Alu 0 312 1 470 152 9 38 chr3 129323426 129323439 -88713719 - L1 LINE L1 -2227 3919 3907 504 276 94 68 chr3 129323841 129324149 -88713009 - L2 LINE L2 -21 3292 2977 2854 179 45 68 chr3 129324149 129324858 -88712300 - L1MD2 LINE L1 -45 6314 5622 1763 244 88 15 chr3 129324858 129324919 -88712239 - L2 LINE L2 -769 2545 2490 2109 92 0 110 chr3 129324919 129325265 -88711893 + AluSx SINE Alu 1 308 -4 1763 244 88 15 chr3 129325265 129325727 -88711431 - L2 LINE L2 -824 2490 1984 1659 176 4 7 chr3 129326094 129326367 -88710791 - AluJo SINE Alu -30 282 11 189 0 0 0 chr3 129326368 129326389 -88710769 + (CCCA)n Simple_repeat Simple_repeat 3 23 0 1601 178 39 60 chr3 129326438 129326821 -88710337 - THE1C LTR MaLR 0 375 1 433 268 154 36 chr3 129326947 129327167 -88709991 + MIR SINE MIR 10 255 -7 23 33 0 0 chr3 129327530 129327560 -88709598 + AT_rich Low_complexity Low_complexity 1 30 0 254 215 31 0 chr3 129327732 129327797 -88709361 + MER58A DNA MER1_type 39 105 -2 314 200 31 0 chr3 129327806 129327871 -88709287 + MER58A DNA MER1_type 77 143 0 241 259 0 0 chr3 129327871 129327924 -88709234 + MER58A DNA MER1_type 172 224 0 1235 185 40 4 chr3 129328168 129328395 -88708763 + MER46A DNA MER2_type 2 236 0 191 286 19 67 chr3 129328470 129328575 -88708583 + L2 LINE L2 2290 2389 -925 2237 109 3 0 chr3 129328819 129329130 -88708028 + AluSx SINE Alu 1 312 0 458 76 38 0 chr3 129329409 129329488 -88707670 + L1MA4A LINE L1 6217 6298 -5 265 223 134 18 chr3 129330272 129330384 -88706774 + MER112 DNA MER1_type 9 133 -127 923 81 19 19 chr3 129330389 129330550 -88706608 + (CTATT)n Simple_repeat Simple_repeat 2 162 0 1324 267 79 53 chr3 129331244 129332255 -88704903 - L1M4b LINE L1 -3954 3184 1937 2476 83 0 0 chr3 129332255 129332567 -88704591 - AluSx SINE Alu 0 312 1 1324 267 79 53 chr3 129332567 129333195 -88703963 - L1M4b LINE L1 -5201 1937 1326 1963 129 7 0 chr3 129333196 129333483 -88703675 - AluSx SINE Alu -23 289 1 312 316 53 27 chr3 129333905 129334130 -88703028 - L1M4b LINE L1 -6612 247 17 249 344 80 0 chr3 129334173 129334298 -88702860 + L2 LINE L2 1813 1947 -1367 * 430 337 82 5 chr3 129334295 129334479 -88702679 + L2 LINE L2 2873 3070 -243 499 288 174 58 chr3 129334538 129334951 -88702207 + L2 LINE L2 1938 2398 -916 651 108 69 0 chr3 129334958 129335060 -88702098 - AluSg/x SINE Alu -9 303 195 741 330 19 49 chr3 129335060 129335468 -88701690 + L2 LINE L2 2688 3080 -233 2287 81 0 11 chr3 129335771 129336080 -88701078 + AluSq SINE Alu 1 306 0 213 121 0 0 chr3 129336867 129336900 -88700258 + (T)n Simple_repeat Simple_repeat 1 33 0 817 207 117 77 chr3 129337010 129337310 -88699848 - MER5C DNA MER1_type -9 315 4 180 0 0 0 chr3 129338896 129338916 -88698242 + (TTG)n Simple_repeat Simple_repeat 2 21 0 300 238 16 0 chr3 129339053 129339116 -88698042 - MIR SINE MIR -21 241 178 213 328 37 8 chr3 129340017 129340151 -88697007 - L2 LINE L2 -978 2336 2199 440 353 0 0 chr3 129340263 129340382 -88696776 - L2 LINE L2 -2899 415 297 259 333 0 12 chr3 129340425 129340506 -88696652 - L2 LINE L2 -2938 376 297 255 181 24 12 chr3 129340938 129341021 -88696137 + CT-rich Low_complexity Low_complexity 2 85 0 2082 100 62 3 chr3 129342191 129342482 -88694676 + AluSq SINE Alu 1 308 -5 320 282 43 53 chr3 129342661 129342849 -88694309 + MER117 DNA MER1_type 1 186 -11 504 308 136 23 chr3 129342860 129343081 -88694077 + MIR SINE MIR 17 262 0 580 277 91 16 chr3 129343101 129343343 -88693815 - MIR SINE MIR -2 260 1 235 190 0 35 chr3 129343434 129343455 -88693703 + (TAG)n Simple_repeat Simple_repeat 1 21 -35 2272 103 0 7 chr3 129343455 129343757 -88693401 + AluSq SINE Alu 2 301 -12 235 190 0 35 chr3 129343757 129343793 -88693365 + (TAG)n Simple_repeat Simple_repeat 21 56 0 422 220 50 0 chr3 129343798 129343898 -88693260 - MIR SINE MIR 0 262 158 23 0 0 0 chr3 129344136 129344159 -88692999 + AT_rich Low_complexity Low_complexity 1 23 0 252 250 188 0 chr3 129344497 129344561 -88692597 + MIR SINE MIR 76 151 -111 229 209 45 0 chr3 129344561 129344628 -88692530 + (TA)n Simple_repeat Simple_repeat 1 70 0 309 26 0 0 chr3 129344638 129344676 -88692482 + (CA)n Simple_repeat Simple_repeat 2 39 0 309 355 114 19 chr3 129344720 129344982 -88692176 + L2 LINE L2 2075 2361 -953 1604 108 44 44 chr3 129345421 129345717 -88691441 + Tigger7 DNA MER2_type 2192 2487 0 3096 180 26 29 chr3 129345717 129346127 -88691031 + L1MC2 LINE L1 4912 5321 -1023 1454 164 62 78 chr3 129346127 129346498 -88690660 + MLT1A1 LTR MaLR 1 365 0 3096 180 26 29 chr3 129346498 129347000 -88690158 + L1MC2 LINE L1 5321 5831 -513 2425 90 3 0 chr3 129347000 129347311 -88689847 + AluSq SINE Alu 1 312 -1 3441 185 51 87 chr3 129347314 129347631 -88689527 + L1MA10 LINE L1 4012 4339 -1807 1841 138 75 19 chr3 129347631 129347950 -88689208 - MER1B DNA MER1_type 0 337 1 3441 185 51 87 chr3 129347950 129348404 -88688754 + L1MA10 LINE L1 4339 4808 -1338 840 120 19 63 chr3 129348404 129348562 -88688596 + AluSg/x SINE Alu 162 312 0 3441 185 51 87 chr3 129348562 129349151 -88688007 + L1MA10 LINE L1 4808 5391 -755 3069 174 57 45 chr3 129349150 129349853 -88687305 + L1MA10 LINE L1 5613 6323 -11 * 2222 98 0 46 chr3 129349945 129350270 -88686888 - AluSx SINE Alu -2 310 1 837 126 0 70 chr3 129350275 129350418 -88686740 - FLAM_C SINE Alu 0 133 1 25 0 0 0 chr3 129350704 129350729 -88686429 + AT_rich Low_complexity Low_complexity 1 25 0 184 302 58 47 chr3 129351293 129351379 -88685779 - MIR3 SINE MIR -30 178 92 1669 219 82 34 chr3 129351738 129351993 -88685165 + L1ME LINE L1 4338 4579 -1567 2166 97 7 0 chr3 129351993 129352282 -88684876 - AluSg SINE Alu -19 291 1 1669 219 82 34 chr3 129352282 129352623 -88684535 + L1ME LINE L1 4579 4963 -1183 195 69 0 0 chr3 129352639 129352668 -88684490 + (TCCCC)n Simple_repeat Simple_repeat 3 31 0 623 103 10 0 chr3 129352676 129352773 -88684385 + (TC)n Simple_repeat Simple_repeat 1 98 0 2002 112 18 0 chr3 129352774 129353060 -88684098 - AluY SINE Alu -20 291 1 723 141 30 44 chr3 129353063 129353198 -88683960 - AluJo/FLAM SINE Alu -169 133 1 3332 231 125 18 chr3 129353233 129353916 -88683242 + L1MC2 LINE L1 3661 4269 -1877 2255 108 0 0 chr3 129353916 129354213 -88682945 + AluSx SINE Alu 1 297 -15 3332 231 125 18 chr3 129354213 129354661 -88682497 + L1MC2 LINE L1 4269 4914 -1232 2152 183 120 24 chr3 129354661 129355154 -88682004 + MER44D DNA MER2_type 2 596 -9 1013 176 10 10 chr3 129355160 129355359 -88681799 + L1ME LINE L1 5301 5499 -667 2219 92 0 52 chr3 129355396 129355721 -88681437 + AluSg SINE Alu 1 308 -2 2883 3 0 0 chr3 129356508 129356817 -88680341 - AluYa5 SINE Alu -2 309 1 262 32 0 0 chr3 129356901 129356932 -88680226 + MSTC LTR MaLR 330 360 -68 243 179 54 18 chr3 129356930 129356986 -88680172 + Tigger7 DNA MER2_type 2188 2245 -342 * 2142 94 0 0 chr3 129357333 129357637 -88679521 - AluY SINE Alu 0 308 5 370 278 0 0 chr3 129357974 129358071 -88679087 - MIR SINE MIR -19 243 147 4171 149 18 18 chr3 129358083 129358788 -88678370 + MER44D DNA MER2_type 1 705 0 5111 184 41 31 chr3 129358788 129359198 -88677960 + L1MC2 LINE L1 4912 5316 -1028 1454 164 62 78 chr3 129359198 129359569 -88677589 + MLT1A1 LTR MaLR 1 365 0 5111 184 41 31 chr3 129359569 129360071 -88677087 + L1MC2 LINE L1 5316 5811 -533 2181 107 3 0 chr3 129360071 129360362 -88676796 + AluSq SINE Alu 1 292 -21 5111 184 41 31 chr3 129360362 129360827 -88676331 + L1MC2 LINE L1 5811 6313 -31 3952 183 48 12 chr3 129360824 129361638 -88675520 + L1MB7 LINE L1 5334 6176 -8 * 21 0 0 0 chr3 129361672 129361693 -88675465 + AT_rich Low_complexity Low_complexity 1 21 0 802 248 71 34 chr3 129362176 129362470 -88674688 + LTR16B LTR ERVL 11 315 -149 227 255 21 0 chr3 129362843 129362890 -88674268 - L2 LINE L2 -16 3256 3209 191 268 0 0 chr3 129362892 129362933 -88674225 - MIR SINE MIR -104 158 118 2362 164 52 2 chr3 129362950 129363413 -88673745 + LTR19A LTR ERV1 1 486 0 1201 67 0 0 chr3 129363413 129363562 -88673596 + HERVFH19I LTR ERV1 1 149 -7570 * 6448 100 55 14 chr3 129363542 129364511 -88672647 + HERVFH19I LTR ERV1 277 1284 -4302 * 6973 107 50 47 chr3 129364508 129365265 -88671893 + HERVFH19I LTR ERV1 1436 2200 -3386 2174 115 0 3 chr3 129365265 129365560 -88671598 - AluSp SINE Alu -19 294 1 6973 107 50 47 chr3 129365560 129366134 -88671024 + HERVFH19I LTR ERV1 2200 2771 -2815 36356 93 14 8 chr3 129366134 129372240 -88664918 + L1PA6 LINE L1 9 6148 -6 13855 73 39 12 chr3 129372240 129374268 -88662890 + HERVFH19I LTR ERV1 2761 4842 -744 1920 152 3 10 chr3 129374268 129374577 -88662581 + AluSx SINE Alu 2 308 -4 2233 68 26 0 chr3 129374577 129374885 -88662273 + LTR19A-int LTR ERV1 5271 5586 0 2605 136 22 54 chr3 129374885 129375387 -88661771 + LTR19A LTR ERV1 1 486 0 2111 126 7 0 chr3 129375553 129375854 -88661304 + AluSq SINE Alu 1 303 -10 189 0 0 0 chr3 129376416 129376437 -88660721 + (A)n Simple_repeat Simple_repeat 1 21 0 790 325 43 11 chr3 129376784 129377431 -88659727 + L1MD3 LINE L1 4386 5053 -1093 897 246 29 29 chr3 129377611 129377924 -88659234 + L1MD3 LINE L1 5270 5582 -2226 585 265 91 32 chr3 129377921 129378755 -88658403 + L1MD3 LINE L1 5804 6578 -1230 * 2880 190 86 54 chr3 129378753 129378795 -88658363 + L1MC4 LINE L1 6947 6986 -1056 1977 88 66 4 chr3 129378795 129379067 -88658091 - AluY SINE Alu -22 289 1 2880 190 86 54 chr3 129379067 129379956 -88657202 + L1MC4 LINE L1 6986 7908 -134 1438 196 11 35 chr3 129379966 129380251 -88656907 + AluJo SINE Alu 18 295 -17 341 293 78 0 chr3 129380252 129380368 -88656790 + L1MC4 LINE L1 7901 8025 -17 1689 75 163 8 chr3 129380377 129380629 -88656529 - AluSg1 SINE Alu -18 291 1 2267 120 0 0 chr3 129380643 129380943 -88656215 - AluSx SINE Alu -12 300 1 23 68 0 0 chr3 129381479 129381523 -88655635 + AT_rich Low_complexity Low_complexity 1 44 0 256 300 25 0 chr3 129382394 129382514 -88654644 + L1M4 LINE L1 4500 4622 -1524 441 281 85 53 chr3 129382595 129382898 -88654260 + L1M4 LINE L1 4733 5049 -1097 702 248 92 39 chr3 129383056 129383462 -88653696 + MLT1F LTR MaLR 1 491 -51 552 240 23 0 chr3 129383576 129383705 -88653453 + FLAM_C SINE Alu 1 132 -11 440 259 64 67 chr3 129384195 129384388 -88652770 + MIR SINE MIR 3 186 -74 187 410 0 0 chr3 129385228 129385328 -88651830 - L2 LINE L2 -976 2338 2239 205 205 0 0 chr3 129385704 129385743 -88651415 + A-rich Low_complexity Low_complexity 1 39 0 1016 141 70 11 chr3 129385768 129385823 -88651335 + MSTB LTR MaLR 1 51 -375 1701 65 0 0 chr3 129385823 129386024 -88651134 - AluY SINE Alu -6 305 105 1016 141 70 11 chr3 129386024 129386153 -88651005 + MSTB LTR MaLR 51 196 -230 774 169 0 0 chr3 129386156 129386274 -88650884 + FLAM_C SINE Alu 4 121 -22 219 69 0 0 chr3 129386274 129386303 -88650855 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1220 169 35 9 chr3 129386303 129386534 -88650624 + MSTB LTR MaLR 190 426 0 2212 113 6 0 chr3 129387228 129387539 -88649619 - AluSq SINE Alu 0 313 1 229 241 203 0 chr3 129387678 129387757 -88649401 - MIR SINE MIR -88 174 80 21 0 0 0 chr3 129388005 129388026 -88649132 + AT_rich Low_complexity Low_complexity 1 21 0 820 108 31 8 chr3 129388178 129388307 -88648851 - AluY SINE Alu -73 238 107 650 158 8 24 chr3 129388312 129388439 -88648719 + MSTB LTR MaLR 72 196 -230 774 169 0 0 chr3 129388442 129388560 -88648598 + FLAM_C SINE Alu 4 121 -22 219 69 0 0 chr3 129388560 129388589 -88648569 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1222 177 30 9 chr3 129388589 129388821 -88648337 + MSTB LTR MaLR 190 426 0 2254 112 3 0 chr3 129389514 129389826 -88647332 - AluSq SINE Alu 0 313 1 229 241 203 0 chr3 129389965 129390044 -88647114 - MIR SINE MIR -88 174 80 32060 105 24 13 chr3 129390969 129397043 -88640115 + L1PA7 LINE L1 11 6154 0 340 186 0 0 chr3 129397887 129397975 -88639183 + AluJ/FRAM SINE Alu 224 311 0 1767 164 0 4 chr3 129397975 129398250 -88638908 + AluSx SINE Alu 1 274 -38 2233 114 0 0 chr3 129399516 129399814 -88637344 - AluSx SINE Alu -14 298 1 3968 220 86 58 chr3 129400522 129401747 -88635411 - HERVI LTR ERV1 -1856 5799 4609 194 208 69 28 chr3 129401747 129401819 -88635339 - L2 LINE L2 -1886 1428 1354 3968 220 86 58 chr3 129401819 129402458 -88634700 - HERVI LTR ERV1 -3046 4609 2608 5245 248 16 11 chr3 129403041 129404375 -88632783 + HERVI LTR ERV1 6412 7752 -33 1221 235 109 45 chr3 129404597 129405111 -88632047 + LTR10B LTR ERV1 1 547 0 2814 137 15 119 chr3 129405111 129405865 -88631293 + L1MC2 LINE L1 5670 6344 0 21 0 0 0 chr3 129405938 129405959 -88631199 + AT_rich Low_complexity Low_complexity 1 21 0 1999 141 0 10 chr3 129405959 129406265 -88630893 - AluSx SINE Alu -9 303 1 263 288 0 0 chr3 129406291 129406350 -88630808 + MIR3 SINE MIR 101 159 -49 311 313 191 0 chr3 129406971 129407086 -88630072 - L2 LINE L2 0 3272 3136 325 206 192 68 chr3 129407141 129407287 -88629871 + L1ME3 LINE L1 5989 6152 -10 1240 203 11 27 chr3 129407753 129408014 -88629144 + MIR SINE MIR 3 259 -3 306 298 83 8 chr3 129408789 129408910 -88628248 - L2 LINE L2 -211 3061 2932 1043 203 0 55 chr3 129409117 129409269 -88627889 - MER58A DNA MER1_type -2196 224 88 2304 163 41 11 chr3 129409269 129409711 -88627447 - MSTB2 LTR MaLR 0 457 3 1043 203 0 55 chr3 129409711 129409795 -88627363 - MER58A DNA MER1_type -2332 88 1 192 293 83 115 chr3 129409796 129410110 -88627048 - L2 LINE L2 -703 2611 2308 28 29 0 0 chr3 129410187 129410222 -88626936 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr3 129410236 129410257 -88626901 + GC_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr3 129410257 129410284 -88626874 + AT_rich Low_complexity Low_complexity 1 27 0 23 33 0 0 chr3 129410324 129410354 -88626804 + GC_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr3 129410357 129410380 -88626778 + AT_rich Low_complexity Low_complexity 1 23 0 189 94 0 0 chr3 129410402 129410434 -88626724 + (T)n Simple_repeat Simple_repeat 1 32 0 26 0 0 0 chr3 129410437 129410463 -88626695 + GC_rich Low_complexity Low_complexity 1 26 0 812 260 33 8 chr3 129411047 129411289 -88625869 - HERVI LTR ERV1 -6500 1285 1038 * 2376 192 46 102 chr3 129411282 129412145 -88625013 - HERVI LTR ERV1 -5832 817 3 1065 233 108 42 chr3 129412167 129412623 -88624535 - LTR10B LTR ERV1 -47 500 15 2157 163 26 16 chr3 129412647 129413340 -88623818 - L1MC/D LINE L1 -671 5673 4980 1211 184 160 4 chr3 129413489 129413739 -88623419 - AluJb SINE Alu -13 289 1 404 199 74 53 chr3 129413837 129413966 -88623192 + MIR SINE MIR 6 140 -68 266 150 0 33 chr3 129414391 129414451 -88622707 - Alu SINE Alu 0 302 245 2213 110 7 0 chr3 129415208 129415509 -88621649 - AluSx SINE Alu -9 303 1 4466 186 62 47 chr3 129415845 129416583 -88620575 + L1MB8 LINE L1 3939 4664 -1514 1496 176 75 73 chr3 129416583 129416918 -88620240 - MLT1C LTR MaLR 0 467 129 1906 130 25 7 chr3 129416918 129417202 -88619956 - AluSx SINE Alu -19 293 5 1496 176 75 73 chr3 129417202 129417332 -88619826 - MLT1C LTR MaLR -338 129 1 4466 186 62 47 chr3 129417332 129418032 -88619126 + L1MB8 LINE L1 4664 5352 -826 1896 127 132 48 chr3 129418032 129418427 -88618731 - MSTA LTR MaLR 0 428 1 4466 186 62 47 chr3 129418427 129419174 -88617984 + L1MB8 LINE L1 5352 6177 -1 768 152 67 98 chr3 129419298 129419360 -88617798 - MER33 DNA MER1_type -2261 324 262 788 167 0 0 chr3 129419360 129419486 -88617672 - FLAM_A SINE Alu -5 128 3 768 152 67 98 chr3 129419486 129419530 -88617628 - MER33 DNA MER1_type -2323 262 218 2252 103 0 0 chr3 129419530 129419820 -88617338 - AluSg SINE Alu -14 296 7 768 152 67 98 chr3 129419820 129420028 -88617130 - MER33 DNA MER1_type -2367 218 19 644 307 58 29 chr3 129421215 129421577 -88615581 - L2 LINE L2 -169 3144 2767 488 246 29 121 chr3 129421583 129421855 -88615303 - L2 LINE L2 -990 2324 2078 189 250 0 50 chr3 129421872 129421932 -88615226 - L2 LINE L2 -2792 522 466 410 171 63 18 chr3 129424155 129424266 -88612892 - L1ME4a LINE L1 -24 6097 5982 798 264 16 40 chr3 129424282 129424604 -88612554 - L1ME4a LINE L1 -196 5925 5612 2271 106 0 7 chr3 129424627 129424929 -88612229 - AluSx SINE Alu -12 300 1 941 101 31 0 chr3 129424940 129425069 -88612089 - AluSg/x SINE Alu -15 297 165 1535 167 33 65 chr3 129425993 129426299 -88610859 - AluJo SINE Alu -16 296 1 21 36 0 0 chr3 129427161 129427189 -88609969 + AT_rich Low_complexity Low_complexity 1 28 0 1851 76 141 0 chr3 129427199 129427461 -88609697 + AluSx SINE Alu 1 299 -3 335 193 0 0 chr3 129427500 129427557 -88609601 + AluS SINE Alu 1 57 -244 37 0 0 0 chr3 129427578 129427615 -88609543 + AT_rich Low_complexity Low_complexity 1 37 0 181 188 0 0 chr3 129428471 129428503 -88608655 + L2 LINE L2 3263 3294 -19 2515 77 0 3 chr3 129428680 129428991 -88608167 + AluSg SINE Alu 1 310 0 501 279 62 12 chr3 129429485 129429646 -88607512 - MER5A DNA MER1_type -18 171 3 224 339 55 49 chr3 129429653 129429836 -88607322 - MIR SINE MIR -72 190 7 239 350 83 11 chr3 129431436 129431548 -88605610 - MIR SINE MIR -65 197 66 899 178 89 126 chr3 129431548 129431795 -88605363 - MER8 DNA MER2_type 0 239 2 239 350 83 11 chr3 129431795 129431862 -88605296 - MIR SINE MIR -196 66 5 4954 125 108 7 chr3 129433647 129434505 -88602653 + Tigger1 DNA MER2_type 24 968 -1450 2383 127 41 5 chr3 129434505 129434538 -88602620 + Tigger1 DNA MER2_type 1563 1593 -825 2300 72 0 39 chr3 129434538 129434844 -88602314 + AluSg SINE Alu 4 297 -13 2383 127 41 5 chr3 129434844 129435227 -88601931 + Tigger1 DNA MER2_type 1593 1994 -424 559 191 0 26 chr3 129435247 129435362 -88601796 + FLAM_A SINE Alu 22 133 -9 1986 139 123 0 chr3 129435365 129435747 -88601411 + Tigger1 DNA MER2_type 1987 2415 -3 190 91 0 68 chr3 129435873 129435917 -88601241 + (GAAA)n Simple_repeat Simple_repeat 2 42 0 1537 126 17 96 chr3 129437370 129437672 -88599486 + AluJo SINE Alu 13 290 -22 503 239 12 84 chr3 129438221 129438388 -88598770 + L1MB8 LINE L1 5887 6041 -137 1440 134 74 5 chr3 129438388 129438604 -88598554 + AluSq SINE Alu 1 231 -82 391 231 138 62 chr3 129438704 129439059 -88598099 + HAL1b LINE L1 13 394 -954 459 261 28 35 chr3 129439151 129439293 -88597865 + MIR3 SINE MIR 58 198 -10 453 19 0 0 chr3 129439824 129439878 -88597280 + (CA)n Simple_repeat Simple_repeat 2 55 0 2129 104 35 0 chr3 129439880 129440167 -88596991 - AluSx SINE Alu -15 297 1 318 109 0 0 chr3 129440297 129440343 -88596815 - AluSg1 SINE Alu -122 178 133 756 103 0 0 chr3 129440343 129440440 -88596718 - AluSg1 SINE Alu -211 98 2 8004 188 52 28 chr3 129440444 129442359 -88594799 + L1MA9 LINE L1 3343 5361 -951 2620 30 3 0 chr3 129442359 129442659 -88594499 + AluY SINE Alu 1 301 -10 8004 188 52 28 chr3 129442659 129443613 -88593545 + L1MA9 LINE L1 5361 6290 -22 269 317 167 61 chr3 129443683 129443863 -88593295 + MIR SINE MIR 46 244 -18 2079 102 26 16 chr3 129444366 129444671 -88592487 - AluSx SINE Alu -4 308 1 306 0 0 0 chr3 129444735 129444769 -88592389 + (CA)n Simple_repeat Simple_repeat 2 35 0 1917 109 27 20 chr3 129444769 129445063 -88592095 - AluSx SINE Alu -16 296 1 369 0 0 0 chr3 129445129 129445170 -88591988 + (CA)n Simple_repeat Simple_repeat 2 42 0 2010 147 7 0 chr3 129445218 129445511 -88591647 - AluSx SINE Alu -17 295 1 1639 193 14 0 chr3 129445827 129446112 -88591046 + AluJo SINE Alu 1 289 -23 238 92 15 77 chr3 129446116 129446181 -88590977 + (GGAGAA)n Simple_repeat Simple_repeat 1 61 0 2098 143 3 0 chr3 129446363 129446664 -88590494 + AluSx SINE Alu 1 302 -10 2304 82 20 0 chr3 129447087 129447380 -88589778 + AluSc SINE Alu 1 299 -10 1174 159 29 93 chr3 129448119 129448200 -88588958 + MER33 DNA MER1_type 1 86 -2499 2518 78 0 0 chr3 129448200 129448508 -88588650 - AluSg1 SINE Alu -1 308 1 1174 159 29 93 chr3 129448508 129448771 -88588387 + MER33 DNA MER1_type 86 323 -1 361 201 182 26 chr3 129449075 129449229 -88587929 + HAL1 LINE L1 1745 1922 -585 2693 166 94 5 chr3 129449379 129449952 -88587206 + L1MB7 LINE L1 5551 6174 -10 29 47 0 0 chr3 129450024 129450067 -88587091 + AT_rich Low_complexity Low_complexity 1 43 0 299 258 157 22 chr3 129450154 129450332 -88586826 + HAL1 LINE L1 2304 2505 -2 1711 144 0 22 chr3 129451365 129451635 -88585523 + AluSx SINE Alu 34 297 -15 1745 162 10 20 chr3 129452334 129452631 -88584527 + AluJb SINE Alu 5 298 -14 2106 126 0 3 chr3 129453066 129453360 -88583798 + AluSg SINE Alu 1 293 -17 2337 71 0 7 chr3 129453706 129454002 -88583156 - AluSc SINE Alu -10 299 6 23 54 0 0 chr3 129455850 129455887 -88581271 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr3 129456034 129456056 -88581102 + AT_rich Low_complexity Low_complexity 1 22 0 273 362 32 23 chr3 129456240 129456458 -88580700 + L2 LINE L2 2350 2569 -745 210 234 21 0 chr3 129459685 129459732 -88577426 + G-rich Low_complexity Low_complexity 5 52 0 216 0 0 0 chr3 129460193 129460217 -88576941 + (CGG)n Simple_repeat Simple_repeat 2 25 0 212 125 0 42 chr3 129460295 129460343 -88576815 + (TCC)n Simple_repeat Simple_repeat 1 46 0 25 31 0 0 chr3 129461415 129461447 -88575711 + GC_rich Low_complexity Low_complexity 1 32 0 906 208 53 85 chr3 129462028 129462346 -88574812 - MER102b DNA MER1_type -6 335 28 1531 102 14 0 chr3 129462438 129462654 -88574504 - AluSp SINE Alu -9 304 86 550 57 0 34 chr3 129462801 129462889 -88574269 + AluSp/q SINE Alu 220 304 -9 23 33 0 0 chr3 129463316 129463346 -88573812 + AT_rich Low_complexity Low_complexity 1 30 0 840 213 55 0 chr3 129463373 129463537 -88573621 - FRAM SINE Alu 0 40 1 1669 159 83 0 chr3 129463912 129464188 -88572970 - AluJb SINE Alu -13 299 1 3565 98 23 32 chr3 129464927 129465097 -88572061 - MER41A LTR ERV1 0 554 384 2190 91 17 7 chr3 129465097 129465394 -88571764 - AluSp SINE Alu -13 300 1 3565 98 23 32 chr3 129465394 129465782 -88571376 - MER41A LTR ERV1 -170 384 1 1231 116 12 104 chr3 129466599 129466840 -88570318 - AluJo SINE Alu -10 302 84 1518 191 23 7 chr3 129467022 129467326 -88569832 - AluJo SINE Alu -3 309 1 294 29 0 0 chr3 129467329 129467364 -88569794 + (T)n Simple_repeat Simple_repeat 1 35 0 188 292 0 0 chr3 129468019 129468067 -88569091 + L2 LINE L2 3221 3268 -4 2562 106 17 0 chr3 129469442 129469800 -88567358 - THE1B LTR MaLR 0 364 1 2379 84 14 3 chr3 129469844 129470189 -88566969 + THE1A LTR MaLR 7 355 0 187 234 0 94 chr3 129470273 129470337 -88566821 - MIR SINE MIR -89 173 116 1744 169 37 0 chr3 129470339 129470634 -88566524 + AluJb SINE Alu 1 306 -6 193 365 0 0 chr3 129471040 129471092 -88566066 - L2 LINE L2 -4 3268 3217 2256 85 3 0 chr3 129471104 129471421 -88565737 - AluSp SINE Alu 0 318 1 210 189 0 0 chr3 129471505 129471553 -88565605 + L2 LINE L2 3225 3313 0 1829 130 23 4 chr3 129472486 129472747 -88564411 + AluSx SINE Alu 9 274 -38 2049 135 35 0 chr3 129473194 129473483 -88563675 + AluSq SINE Alu 1 299 -14 2338 92 0 0 chr3 129473695 129473989 -88563169 - AluSg SINE Alu -16 294 1 389 279 0 16 chr3 129474924 129475046 -88562112 - MIR3 SINE MIR -6 202 83 1834 174 29 0 chr3 129476019 129476329 -88560829 - 7SLRNA srpRNA srpRNA 0 320 2 2209 87 11 0 chr3 129477075 129477361 -88559797 + AluSq SINE Alu 1 289 -24 2331 97 7 0 chr3 129478110 129478418 -88558740 + AluY SINE Alu 2 311 0 676 232 37 99 chr3 129478545 129478817 -88558341 - MIR SINE MIR -2 260 6 364 326 25 105 chr3 129478897 129479250 -88557908 - L2 LINE L2 -19 3253 2929 371 314 118 13 chr3 129479378 129479531 -88557627 - L3 LINE CR1 -3 1574 1406 * 476 190 165 57 chr3 129479529 129479687 -88557471 + L2 LINE L2 3135 3309 -4 * 820 300 63 30 chr3 129479684 129480180 -88556978 - L3 LINE CR1 -164 1413 815 236 220 34 34 chr3 129480177 129480236 -88556922 - L2 LINE L2 -683 2631 2573 * 421 361 90 36 chr3 129480496 129481142 -88556016 - L2 LINE L2 -860 2454 1774 996 167 0 0 chr3 129481332 129481488 -88555670 + FAM SINE Alu 1 45 -4 5657 67 150 58 chr3 129481814 129482887 -88554271 + MER11A LTR ERVK 1 1266 0 433 236 6 124 chr3 129482889 129483067 -88554091 - MIR3 SINE MIR -4 204 48 * 613 305 40 22 chr3 129483027 129483250 -88553908 + MIR SINE MIR 23 249 -13 768 226 72 10 chr3 129483354 129483562 -88553596 + Charlie2 DNA MER1_type 1 221 -2641 1415 189 50 94 chr3 129483691 129483864 -88553294 + Charlie2 DNA MER1_type 2234 2413 -449 2269 129 3 0 chr3 129483864 129484175 -88552983 + AluSx SINE Alu 1 312 0 1415 189 50 94 chr3 129484175 129484620 -88552538 + Charlie2 DNA MER1_type 2413 2825 -37 982 141 70 49 chr3 129485082 129485207 -88551951 - MER5A DNA MER1_type 0 189 57 1948 125 17 17 chr3 129485207 129485502 -88551656 + AluSx SINE Alu 1 295 -17 982 141 70 49 chr3 129485502 129485561 -88551597 - MER5A DNA MER1_type -132 57 1 414 259 30 15 chr3 129485835 129485970 -88551188 - MIR SINE MIR -6 256 120 1236 126 0 11 chr3 129485989 129486164 -88550994 + AluSg/x SINE Alu 134 306 -4 197 105 0 26 chr3 129486687 129486725 -88550433 + (TG)n Simple_repeat Simple_repeat 2 38 0 1282 276 94 26 chr3 129486737 129487462 -88549696 + L1M4b LINE L1 1349 2322 -4816 2103 157 6 3 chr3 129487462 129487780 -88549378 + 7SLRNA srpRNA srpRNA 1 319 -1 1282 276 94 26 chr3 129487780 129487918 -88549240 + L1M4b LINE L1 2322 2449 -4689 769 141 63 7 chr3 129487911 129488053 -88549105 - L1M4 LINE L1 -1939 4207 4058 * 1484 184 50 8 chr3 129488129 129488390 -88548768 - AluJb SINE Alu -40 272 1 323 309 79 94 chr3 129488455 129488537 -88548621 + L3 LINE CR1 1310 1392 -185 1964 108 43 0 chr3 129488537 129488815 -88548343 - AluSx SINE Alu -21 291 2 323 309 79 94 chr3 129488815 129488997 -88548161 + L3 LINE CR1 1392 1570 -7 21 57 0 0 chr3 129489663 129489698 -88547460 + AT_rich Low_complexity Low_complexity 1 35 0 2309 88 13 3 chr3 129489709 129490016 -88547142 - AluSq SINE Alu -3 310 1 1924 157 3 7 chr3 129490019 129490306 -88546852 - AluSx SINE Alu -22 290 5 258 32 0 0 chr3 129490371 129490402 -88546756 + (TTA)n Simple_repeat Simple_repeat 3 33 0 1927 140 4 0 chr3 129490402 129490681 -88546477 - AluSx SINE Alu -32 280 1 503 286 15 0 chr3 129490885 129491081 -88546077 - L1MC4a LINE L1 -1886 5922 5724 405 0 0 0 chr3 129491264 129491309 -88545849 + (GA)n Simple_repeat Simple_repeat 2 46 0 283 372 16 16 chr3 129491314 129491435 -88545723 - MER5B DNA MER1_type -9 169 49 389 282 121 47 chr3 129491935 129492322 -88544836 - L1ME4a LINE L1 -212 5909 5494 185 0 40 0 chr3 129492441 129492466 -88544692 + (ACTTG)n Simple_repeat Simple_repeat 2 27 0 416 291 133 30 chr3 129492471 129492537 -88544621 + MIR SINE MIR 38 96 -166 2141 109 0 17 chr3 129492537 129492830 -88544328 - AluSx SINE Alu -24 288 1 416 291 133 30 chr3 129492830 129492966 -88544192 + MIR SINE MIR 96 261 -1 194 351 18 53 chr3 129492965 129493079 -88544079 - L2 LINE L2 -25 3247 3138 * 2203 123 7 0 chr3 129493205 129493507 -88543651 - AluSx SINE Alu -8 304 1 687 193 7 22 chr3 129493597 129493732 -88543426 - FLAM_C SINE Alu 0 133 1 1827 102 25 0 chr3 129493762 129494007 -88543151 - AluSx SINE Alu -30 282 32 467 288 73 0 chr3 129494008 129494185 -88542973 - L1MC4a LINE L1 -1927 5881 5692 409 272 21 47 chr3 129494385 129494576 -88542582 + MER112 DNA MER1_type 65 250 -10 1884 166 7 7 chr3 129496071 129496378 -88540780 + AluSx SINE Alu 1 307 -5 2233 108 0 0 chr3 129497017 129497314 -88539844 + AluY SINE Alu 1 297 -14 1765 173 20 3 chr3 129497338 129497644 -88539514 - AluJb SINE Alu -1 311 1 366 191 99 7 chr3 129497649 129497790 -88539368 - L1 LINE L1 -2812 3334 3181 296 289 252 0 chr3 129497810 129497945 -88539213 - MIR SINE MIR -43 219 51 29 0 0 0 chr3 129498113 129498142 -88539016 + AT_rich Low_complexity Low_complexity 1 29 0 1312 191 53 57 chr3 129498264 129498563 -88538595 - AluJo SINE Alu -14 298 1 619 215 37 15 chr3 129498571 129498706 -88538452 - MIR SINE MIR -122 140 3 1726 123 26 93 chr3 129499082 129499392 -88537766 - AluSx SINE Alu -23 289 1 3113 117 29 2 chr3 129499814 129500292 -88536866 - MER1A DNA MER1_type 0 529 39 253 269 100 62 chr3 129500707 129500837 -88536321 - MIR SINE MIR -114 148 14 408 245 123 7 chr3 129501170 129501325 -88535833 + MIR SINE MIR 90 262 0 2197 107 0 0 chr3 129501418 129501735 -88535423 - AluSc SINE Alu 0 317 1 212 309 0 0 chr3 129502599 129502654 -88534504 + CT-rich Low_complexity Low_complexity 5 59 0 772 239 77 86 chr3 129502795 129502943 -88534215 - L1MC5 LINE L1 -37 7924 7776 2074 117 3 0 chr3 129502943 129503248 -88533910 - AluSx SINE Alu 0 307 2 2455 83 0 0 chr3 129503256 129503557 -88533601 - AluSg SINE Alu -9 301 1 772 239 77 86 chr3 129503557 129504012 -88533146 - L1MC5 LINE L1 -192 7769 7317 1339 179 136 27 chr3 129504035 129504365 -88532793 + MER47A DNA MER2_type 1 366 0 1216 116 106 0 chr3 129504548 129504755 -88532403 - MER30 DNA MER1_type -1 229 1 1041 209 28 5 chr3 129504770 129504981 -88532177 + MER58A DNA MER1_type 7 222 -2 965 240 133 34 chr3 129504984 129505509 -88531649 - L1MC5 LINE L1 -757 7204 6628 4085 186 55 17 chr3 129505582 129507361 -88529797 - L1MB5 LINE L1 -38 6136 4279 24 53 0 0 chr3 129507521 129507559 -88529599 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr3 129507652 129507673 -88529485 + AT_rich Low_complexity Low_complexity 1 21 0 1674 133 60 0 chr3 129507673 129507922 -88529236 - AluSx SINE Alu -22 290 27 2381 86 0 3 chr3 129507922 129508223 -88528935 - AluSx SINE Alu -10 302 1 294 225 25 75 chr3 129508920 129509000 -88528158 + L2 LINE L2 3194 3269 -44 1995 118 4 0 chr3 129509636 129509915 -88527243 + AluSp SINE Alu 1 280 -33 252 0 0 0 chr3 129509917 129509945 -88527213 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr3 129510443 129510464 -88526694 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr3 129510744 129510767 -88526391 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 1842 166 7 0 chr3 129510921 129511222 -88525936 - AluJb SINE Alu -9 303 1 366 288 40 93 chr3 129511341 129511619 -88525539 + L2 LINE L2 3008 3270 -43 * 392 297 17 8 chr3 129511586 129511704 -88525454 + L2 LINE L2 3154 3272 0 218 209 23 0 chr3 129511887 129511930 -88525228 + L2 LINE L2 3267 3310 -3 248 284 49 25 chr3 129512285 129512366 -88524792 - L2 LINE L2 -5 3267 3185 420 241 152 52 chr3 129512594 129512638 -88524520 - MIR SINE MIR -6 256 218 2182 136 0 0 chr3 129512638 129512940 -88524218 - AluSx SINE Alu -10 302 1 420 241 152 52 chr3 129512940 129513086 -88524072 - MIR SINE MIR -44 218 47 664 158 82 61 chr3 129513220 129513416 -88523742 + MER33 DNA MER1_type 22 221 -103 202 259 69 0 chr3 129513840 129513898 -88523260 - MIR SINE MIR -96 166 105 272 206 63 0 chr3 129513899 129513962 -88523196 + MIR SINE MIR 158 224 -38 299 276 124 38 chr3 129514125 129514335 -88522823 - L1ME LINE L1 -331 5790 5563 22 0 0 0 chr3 129514417 129514439 -88522719 + AT_rich Low_complexity Low_complexity 1 22 0 2055 147 0 6 chr3 129514495 129514807 -88522351 - AluSx SINE Alu -2 310 1 1249 180 134 92 chr3 129514966 129515029 -88522129 - Charlie1b DNA MER1_type -2240 521 462 2080 123 3 3 chr3 129515029 129515322 -88521836 + AluSx SINE Alu 1 293 -19 1249 180 134 92 chr3 129515322 129515758 -88521400 - Charlie1b DNA MER1_type -2299 462 1 183 203 34 17 chr3 129516699 129516758 -88520400 - L2 LINE L2 -831 2483 2424 412 303 196 10 chr3 129516855 129517366 -88519792 - L2 LINE L2 -946 2368 1763 2181 116 40 20 chr3 129517684 129518037 -88519121 - THE1B LTR MaLR 0 364 5 2216 98 7 0 chr3 129518316 129518611 -88518547 - AluSx SINE Alu -15 297 1 673 207 129 46 chr3 129518658 129518875 -88518283 + MIR SINE MIR 28 262 0 1992 112 0 7 chr3 129519619 129519895 -88517263 - AluSx SINE Alu -38 274 1 2290 115 3 0 chr3 129520791 129521096 -88516062 - AluSx SINE Alu -6 306 1 2281 105 0 29 chr3 129521215 129521530 -88515628 - AluSx SINE Alu -2 310 5 456 303 64 69 chr3 129521547 129522013 -88515145 - LTR67 LTR ERVL -2 555 92 281 155 28 0 chr3 129522137 129522208 -88514950 + (CAAAC)n Simple_repeat Simple_repeat 2 74 0 2066 134 3 10 chr3 129522631 129522936 -88514222 + AluSx SINE Alu 1 303 -9 1706 181 3 13 chr3 129523085 129523383 -88513775 - AluJo SINE Alu -17 295 1 2278 101 7 0 chr3 129523535 129523831 -88513327 + AluSq SINE Alu 1 298 -15 5204 86 44 0 chr3 129523850 129524593 -88512565 + L1MA1 LINE L1 5526 6301 -1 21 0 0 0 chr3 129525899 129525920 -88511238 + AT_rich Low_complexity Low_complexity 1 21 0 2201 105 0 0 chr3 129525965 129526259 -88510899 + AluSx SINE Alu 1 294 -18 214 222 0 19 chr3 129526260 129526314 -88510844 + (TA)n Simple_repeat Simple_repeat 2 54 0 7628 121 19 21 chr3 129526314 129526716 -88510442 + Tigger1 DNA MER2_type 2 403 -2015 2194 94 0 7 chr3 129526716 129527025 -88510133 + AluSg1 SINE Alu 1 307 -2 7628 121 19 21 chr3 129527025 129527783 -88509375 + Tigger1 DNA MER2_type 403 1160 -1258 4173 84 20 200 chr3 129527783 129529397 -88507761 + pTR5 LTR ERV1 749 2606 0 7302 129 17 21 chr3 129529398 129530495 -88506663 + Tigger1 DNA MER2_type 1156 2256 -162 278 0 113 0 chr3 129530495 129530557 -88506601 + (TA)n Simple_repeat Simple_repeat 1 69 0 2168 81 7 0 chr3 129530557 129530840 -88506318 - AluSp SINE Alu -28 285 1 7302 129 17 21 chr3 129530840 129530927 -88506231 + Tigger1 DNA MER2_type 2254 2336 -82 1566 152 16 65 chr3 129530927 129531140 -88506018 - AluJo SINE Alu -18 294 99 2031 123 0 0 chr3 129531140 129531433 -88505725 - AluSq SINE Alu -15 298 6 1566 152 16 65 chr3 129531433 129531528 -88505630 - AluJo SINE Alu -213 99 1 931 168 0 6 chr3 129532298 129532459 -88504699 + FRAM SINE Alu 1 154 -22 2371 66 3 0 chr3 129532689 129532990 -88504168 + AluY SINE Alu 1 302 -9 687 191 151 0 chr3 129533387 129533539 -88503619 - MER5A DNA MER1_type -6 183 9 1806 154 0 22 chr3 129534023 129534372 -88502786 + AluJo SINE Alu 1 342 0 1364 158 61 47 chr3 129535996 129536274 -88500884 - AluJb SINE Alu -30 282 1 288 197 42 28 chr3 129536274 129536345 -88500813 + MIR SINE MIR 81 152 -110 1456 139 45 42 chr3 129536922 129536966 -88500192 - L1MB3 LINE L1 -7 6176 6134 1627 146 68 0 chr3 129536966 129537247 -88499911 - AluJo SINE Alu -12 300 1 1456 139 45 42 chr3 129537247 129537490 -88499668 - L1MB3 LINE L1 -49 6134 5888 828 264 79 45 chr3 129538219 129538384 -88498774 - MLT1G1 LTR MaLR -9 586 428 1133 195 47 5 chr3 129538384 129538599 -88498559 - MER58A DNA MER1_type 0 224 1 828 264 79 45 chr3 129538599 129538716 -88498442 - MLT1G1 LTR MaLR -167 428 316 926 0 18 0 chr3 129538716 129538825 -88498333 + (TTTTA)n Simple_repeat Simple_repeat 2 112 0 2023 94 4 7 chr3 129538828 129539104 -88498054 - AluSc SINE Alu -34 275 1 828 264 79 45 chr3 129539104 129539311 -88497847 - MLT1G1 LTR MaLR -280 315 1 658 228 0 0 chr3 129540115 129540242 -88496916 - FLAM_A SINE Alu -6 127 1 1697 168 27 0 chr3 129540252 129540549 -88496609 - AluJb SINE Alu -7 305 1 284 309 93 10 chr3 129541387 129541484 -88495674 - L2 LINE L2 -8 3305 3201 2009 143 2 111 chr3 129541562 129541698 -88495460 + MLT1B LTR MaLR 1 150 -240 1987 123 59 54 chr3 129541698 129541871 -88495287 - THE1C LTR MaLR 0 375 204 246 32 0 0 chr3 129541871 129541902 -88495256 + (GA)n Simple_repeat Simple_repeat 2 32 0 1987 123 59 54 chr3 129541902 129542101 -88495057 - THE1C LTR MaLR -171 204 1 10054 113 50 13 chr3 129542101 129543625 -88493533 - THE1C-int LTR MaLR 0 1580 1 2037 146 23 47 chr3 129543625 129544009 -88493149 - THE1C LTR MaLR 0 375 1 2009 143 2 111 chr3 129544009 129544107 -88493051 + MLT1B LTR MaLR 148 255 -135 2447 54 0 3 chr3 129544107 129544403 -88492755 + AluY SINE Alu 1 295 -16 2009 143 2 111 chr3 129544403 129544599 -88492559 + MLT1B LTR MaLR 255 387 -3 243 258 117 17 chr3 129544727 129544847 -88492311 + L2 LINE L2 3082 3213 -100 277 323 40 20 chr3 129545382 129545481 -88491677 + MER5B DNA MER1_type 12 112 -66 1178 187 64 91 chr3 129545900 129546275 -88490883 + MLT1A1 LTR MaLR 1 365 0 347 118 0 0 chr3 129546328 129546379 -88490779 + L2 LINE L2 3210 3260 -12 190 316 79 26 chr3 129546544 129546658 -88490500 - L2 LINE L2 -15 3298 3179 450 288 61 8 chr3 129547024 129547156 -88490002 - L2 LINE L2 0 3272 3134 2299 99 0 0 chr3 129547251 129547563 -88489595 + AluSx SINE Alu 1 312 0 515 321 58 11 chr3 129548058 129548248 -88488910 + MIR SINE MIR 34 232 -30 2095 122 0 0 chr3 129548275 129548578 -88488580 - AluSx SINE Alu -9 303 1 562 260 120 16 chr3 129548944 129549136 -88488022 - MIR SINE MIR -6 256 45 356 368 53 7 chr3 129549391 129549543 -88487615 - L2 LINE L2 -5 3267 3109 1594 186 3 0 chr3 129549733 129550087 -88487071 - AluJo SINE Alu 0 367 13 1724 125 0 0 chr3 129550496 129550744 -88486414 + AluSg SINE Alu 39 286 -24 273 57 0 0 chr3 129550747 129550782 -88486376 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 236 320 47 31 chr3 129551227 129551355 -88485803 - L2 LINE L2 -4 3309 3180 2051 120 3 3 chr3 129552078 129552387 -88484771 - AluSg SINE Alu -1 309 1 327 290 80 10 chr3 129553632 129553732 -88483426 + MIR SINE MIR 77 183 -79 206 219 0 0 chr3 129554353 129554394 -88482764 + (TCCA)n Simple_repeat Simple_repeat 3 43 0 268 200 50 0 chr3 129556255 129556315 -88480843 + MIR SINE MIR 186 248 -14 2294 127 18 0 chr3 129556792 129557122 -88480036 + MER1B DNA MER1_type 1 336 -1 183 288 34 34 chr3 129557176 129557235 -88479923 - MER5A DNA MER1_type -58 131 73 2048 141 0 0 chr3 129560161 129560467 -88476691 + AluSx SINE Alu 1 306 -6 734 273 131 37 chr3 129560508 129560860 -88476298 + L2 LINE L2 2928 3312 -1 967 207 0 0 chr3 129561414 129561578 -88475580 + FRAM SINE Alu 1 164 -2 229 283 120 33 chr3 129561943 129562035 -88475123 - MIR3 SINE MIR -44 164 65 2670 176 11 62 chr3 129563127 129563657 -88473501 + MLT1D LTR MaLR 1 503 -2 257 306 77 47 chr3 129563709 129563944 -88473214 + L2 LINE L2 2817 3058 -214 261 119 0 0 chr3 129563946 129563988 -88473170 + (TCCC)n Simple_repeat Simple_repeat 1 42 0 1836 142 27 10 chr3 129563988 129564147 -88473011 - AluJb SINE Alu -12 300 132 1910 115 20 3 chr3 129564147 129564443 -88472715 - AluSx SINE Alu -11 301 1 1836 142 27 10 chr3 129564443 129564578 -88472580 - AluJb SINE Alu -180 132 1 242 300 18 18 chr3 129565506 129565616 -88471542 + GA-rich Low_complexity Low_complexity 4 113 0 425 284 122 78 chr3 129565939 129566062 -88471096 - L1MEd LINE L1 -4909 1210 1094 2221 112 0 0 chr3 129566062 129566375 -88470783 - AluSq SINE Alu 0 313 1 425 284 122 78 chr3 129566375 129566572 -88470586 - L1MEd LINE L1 -5025 1094 876 263 318 66 56 chr3 129566794 129566992 -88470166 - MLT1J LTR MaLR -202 309 110 2034 100 0 0 chr3 129567053 129567322 -88469836 - AluSx SINE Alu -43 269 1 503 263 30 8 chr3 129569139 129569272 -88467886 + MIR SINE MIR 121 256 -6 434 309 99 0 chr3 129569440 129569602 -88467556 + MER91A DNA MER1_type 2 179 -17 307 323 52 0 chr3 129569602 129569698 -88467460 + MER91A DNA MER1_type 94 194 -2 2193 94 7 0 chr3 129570158 129570457 -88466701 - AluSq SINE Alu -12 301 1 761 236 84 25 chr3 129571425 129571662 -88465496 - MIR SINE MIR 0 262 12 2163 107 0 7 chr3 129571857 129572155 -88465003 - AluSx SINE Alu -16 296 1 2143 108 7 0 chr3 129573518 129573813 -88463345 - AluSx SINE Alu -15 297 1 1009 236 44 9 chr3 129573823 129574052 -88463106 - MIR SINE MIR -14 248 12 22 70 0 0 chr3 129574743 129574786 -88462372 + AT_rich Low_complexity Low_complexity 1 43 0 233 194 81 32 chr3 129574900 129574962 -88462196 + Tigger5 DNA MER2_type 2252 2316 -7 * 2342 138 0 14 chr3 129574912 129575274 -88461884 - MER47A DNA MER2_type -9 357 1 993 221 58 80 chr3 129575550 129576139 -88461019 + L1ME1 LINE L1 1415 1990 -4406 4358 222 71 45 chr3 129576166 129576428 -88460730 + L1ME1 LINE L1 3658 3912 -2303 2078 159 3 0 chr3 129576428 129576767 -88460391 + L1MC1 LINE L1 5988 6327 -6 4358 222 71 45 chr3 129576767 129577241 -88459917 + L1ME1 LINE L1 3912 4372 -1843 2116 138 0 0 chr3 129577241 129577532 -88459626 + AluSx SINE Alu 1 291 -21 4358 222 71 45 chr3 129577532 129578301 -88458857 + L1ME1 LINE L1 4372 5203 -1012 1024 113 0 0 chr3 129578302 129578435 -88458723 + AluSq/x SINE Alu 1 133 -179 3068 201 40 55 chr3 129578467 129578683 -88458475 + L1ME1 LINE L1 5191 5409 -826 2250 115 0 0 chr3 129578683 129578979 -88458179 + AluSg SINE Alu 1 296 -14 3068 201 40 55 chr3 129578979 129579818 -88457340 + L1ME1 LINE L1 5409 6230 -5 384 224 37 37 chr3 129582294 129582401 -88454757 + MIR SINE MIR 132 238 -24 2283 104 3 7 chr3 129582534 129582841 -88454317 - AluSx SINE Alu -6 306 1 1835 129 8 0 chr3 129582891 129583146 -88454012 - AluSx SINE Alu -18 294 38 2204 114 0 0 chr3 129583158 129583456 -88453702 - AluSx SINE Alu -14 298 1 301 267 87 70 chr3 129583496 129583668 -88453490 + MIR SINE MIR 17 191 -71 22 35 0 0 chr3 129585498 129585527 -88451631 + AT_rich Low_complexity Low_complexity 1 29 0 2601 228 70 27 chr3 129586011 129586946 -88450212 + L2 LINE L2 2340 3313 0 244 326 127 59 chr3 129586951 129587258 -88449900 + L2 LINE L2 880 1207 -2107 242 329 0 13 chr3 129587553 129587632 -88449526 + L2 LINE L2 3232 3309 -4 1952 127 0 54 chr3 129588886 129589200 -88447958 - AluSx SINE Alu -15 297 1 26 30 0 0 chr3 129589644 129589677 -88447481 + AT_rich Low_complexity Low_complexity 1 33 0 2355 60 3 0 chr3 129589849 129590148 -88447010 - L1PA8 LINE L1 -2 6170 5871 207 0 0 0 chr3 129590155 129590178 -88446980 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1664 193 11 0 chr3 129590179 129590459 -88446699 - AluJo SINE Alu -29 283 1 2265 107 3 0 chr3 129591153 129591452 -88445706 - AluSp SINE Alu -13 300 1 207 298 58 41 chr3 129591566 129591687 -88445471 + L2 LINE L2 3191 3313 0 216 294 28 73 chr3 129591850 129591959 -88445199 - MIR3 SINE MIR -97 111 8 401 286 170 0 chr3 129592499 129592681 -88444477 + MIR SINE MIR 6 218 -44 363 296 223 10 chr3 129592887 129593093 -88444065 - MIR SINE MIR 0 262 13 2372 137 45 41 chr3 129593518 129594008 -88443150 + L1MA9 LINE L1 5821 6312 0 1652 189 56 83 chr3 129594008 129594541 -88442617 + L1MD2 LINE L1 5725 6243 -116 868 145 0 0 chr3 129594644 129594768 -88442390 - FRAM SINE Alu -33 143 20 2244 93 3 3 chr3 129594797 129595111 -88442047 - AluSx SINE Alu 0 314 1 3976 165 37 19 chr3 129595138 129595950 -88441208 + L1MB7 LINE L1 5327 6153 -31 9207 127 4 4 chr3 129596051 129597580 -88439578 - L1P LINE L1 -1465 4681 3153 1954 127 19 45 chr3 129598619 129598746 -88438412 + AluSx SINE Alu 1 130 -182 2330 96 0 0 chr3 129598746 129599047 -88438111 + AluSg SINE Alu 1 301 -9 2271 102 0 0 chr3 129599049 129599342 -88437816 + AluSx SINE Alu 1 293 -19 1954 127 19 45 chr3 129599342 129599525 -88437633 + AluSx SINE Alu 131 306 -6 1076 204 38 0 chr3 129599589 129599800 -88437358 + AluJb SINE Alu 1 219 -93 297 0 0 0 chr3 129601447 129601480 -88435678 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 315 0 0 0 chr3 129601479 129601514 -88435644 + (GA)n Simple_repeat Simple_repeat 2 36 0 1161 170 28 46 chr3 129601824 129602107 -88435051 - MLT1B LTR MaLR 0 390 113 222 171 0 0 chr3 129602181 129602222 -88434936 + CT-rich Low_complexity Low_complexity 2 42 0 5230 122 9 33 chr3 129602660 129603651 -88433507 - L1PA13 LINE L1 -12 6151 5202 575 143 98 0 chr3 129603651 129603763 -88433395 - MLT1B LTR MaLR -265 125 3 549 30 0 0 chr3 129603917 129603984 -88433174 + (CA)n Simple_repeat Simple_repeat 2 68 0 2200 77 35 14 chr3 129603990 129604275 -88432883 - AluY SINE Alu -20 291 1 1491 253 96 32 chr3 129604290 129604966 -88432192 - L1ME3A LINE L1 -38 6132 5414 * 3087 185 62 10 chr3 129604963 129605749 -88431409 - L1MB8 LINE L1 -187 5991 5158 2330 93 3 3 chr3 129605749 129606050 -88431108 - AluSg SINE Alu -9 301 1 3087 185 62 10 chr3 129606050 129606115 -88431043 - L1MB8 LINE L1 -1020 5158 5098 21 0 0 0 chr3 129606236 129606257 -88430901 + AT_rich Low_complexity Low_complexity 1 21 0 574 272 82 9 chr3 129606375 129606607 -88430551 - L1ME3A LINE L1 0 6170 5922 1892 152 15 0 chr3 129606707 129606829 -88430329 - L1PB4 LINE L1 -130 6026 5905 531 294 12 28 chr3 129606829 129607077 -88430081 - L1ME3A LINE L1 -276 5902 5659 357 244 50 8 chr3 129607094 129607213 -88429945 - L1ME3A LINE L1 -878 5268 5145 1258 161 0 35 chr3 129607216 129607446 -88429712 - AluJb SINE Alu -14 298 77 862 245 114 53 chr3 129607456 129607834 -88429324 - L1ME3A LINE L1 -1004 5142 4685 2298 103 0 0 chr3 129607834 129608134 -88429024 - AluSq SINE Alu -13 300 1 862 245 114 53 chr3 129608134 129608319 -88428839 - L1ME3A LINE L1 -1461 4685 4513 913 181 62 5 chr3 129608400 129608920 -88428238 - MLT2F LTR ERVL -38 625 1 353 275 72 81 chr3 129609054 129609290 -88427868 - HAL1b LINE L1 -1073 275 42 1494 278 44 6 chr3 129610925 129611539 -88425619 + L2 LINE L2 2666 3304 -9 5272 126 35 13 chr3 129611652 129612146 -88425012 - L1M2 LINE L1 -743 5403 4921 2175 115 3 0 chr3 129612146 129612434 -88424724 - AluSx SINE Alu -7 305 17 5272 126 35 13 chr3 129612434 129613030 -88424128 - L1M2 LINE L1 -1225 4921 4349 960 211 88 4 chr3 129613032 129613259 -88423899 - L1MC/D LINE L1 -621 5738 5493 840 108 0 34 chr3 129613264 129613412 -88423746 - L1PA13 LINE L1 0 6163 6021 245 295 87 87 chr3 129613563 129613736 -88423422 - L2 LINE L2 -16 3297 3125 938 197 11 16 chr3 129613765 129613948 -88423210 - MER5A DNA MER1_type 0 189 8 192 360 70 0 chr3 129613959 129614073 -88423085 - L2 LINE L2 -258 3014 2893 718 100 0 0 chr3 129614701 129614801 -88422357 + HY3 scRNA scRNA 1 100 -1 600 181 174 26 chr3 129616171 129616326 -88420832 - MER5B DNA MER1_type 0 178 1 462 154 10 19 chr3 129616340 129616444 -88420714 + CT-rich Low_complexity Low_complexity 1 103 0 2217 119 3 0 chr3 129616824 129617118 -88420040 - AluSx SINE Alu -17 295 1 1602 209 32 49 chr3 129618179 129618649 -88418509 + LTR40c LTR ERVL 4 465 0 984 102 0 0 chr3 129619040 129619167 -88417991 + AluSq/x SINE Alu 1 127 -185 28 29 0 0 chr3 129619256 129619291 -88417867 + AT_rich Low_complexity Low_complexity 1 35 0 2281 187 21 70 chr3 129619374 129619988 -88417170 - L1ME1 LINE L1 -5 6161 5578 826 191 43 0 chr3 129619989 129620130 -88417028 + AluJo SINE Alu 1 147 -165 1104 170 105 32 chr3 129620142 129620419 -88416739 - L1ME1 LINE L1 -577 5589 5293 3180 150 18 11 chr3 129620420 129620603 -88416555 - MER44D DNA MER2_type -1882 605 425 1938 121 54 46 chr3 129620603 129620975 -88416183 - THE1C LTR MaLR 0 375 1 3180 150 18 11 chr3 129620975 129621337 -88415821 - MER44D DNA MER2_type -2062 425 1 2296 104 3 13 chr3 129621353 129621661 -88415497 - AluSq SINE Alu -8 305 1 4796 204 26 16 chr3 129621661 129622627 -88414531 - L1ME1 LINE L1 -902 5244 4262 1633 192 3 23 chr3 129622627 129622929 -88414229 - AluJo SINE Alu -16 296 1 4796 204 26 16 chr3 129622929 129623214 -88413944 - L1ME1 LINE L1 -1884 4262 3981 1876 75 111 23 chr3 129623216 129623522 -88413636 - L1PA10 LINE L1 0 6168 5836 186 43 0 0 chr3 129623622 129623645 -88413513 + (A)n Simple_repeat Simple_repeat 1 23 0 747 276 55 32 chr3 129624450 129624959 -88412199 - L1MC5 LINE L1 -816 6992 6455 330 138 0 0 chr3 129624974 129625032 -88412126 + (TATG)n Simple_repeat Simple_repeat 4 61 0 407 259 226 29 chr3 129625106 129625229 -88411929 - L1MC4a LINE L1 -1480 6328 6230 21 57 0 0 chr3 129625229 129625264 -88411894 + AT_rich Low_complexity Low_complexity 1 35 0 407 259 226 29 chr3 129625264 129625345 -88411813 - L1MC4a LINE L1 -1578 6230 6043 2229 123 0 3 chr3 129625375 129625676 -88411482 - AluSx SINE Alu -12 300 1 588 194 10 0 chr3 129625745 129625848 -88411310 + FRAM SINE Alu 67 170 -6 25 51 0 0 chr3 129625848 129625887 -88411271 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr3 129626255 129626276 -88410882 + AT_rich Low_complexity Low_complexity 1 21 0 471 278 16 77 chr3 129626359 129626553 -88410605 + L2 LINE L2 3132 3313 0 1596 269 75 24 chr3 129626836 129627475 -88409683 - L1MEc LINE L1 -4558 1838 1167 * 20847 166 20 95 chr3 129627461 129629462 -88407696 - L1MA1 LINE L1 0 6617 4467 2891 85 10 3 chr3 129629462 129629852 -88407306 - L1PA13 LINE L1 -2 6161 5769 4582 68 2 17 chr3 129629852 129630424 -88406734 - L1PA11 LINE L1 -1 6173 5608 20847 166 20 95 chr3 129630424 129633366 -88403792 - L1MA1 LINE L1 -2149 4468 2280 2650 43 0 0 chr3 129633366 129633669 -88403489 + AluY SINE Alu 1 303 -8 20847 166 20 95 chr3 129633669 129635131 -88402027 - L1MA1 LINE L1 -4337 2280 709 988 243 34 14 chr3 129635137 129635433 -88401725 - L1M4 LINE L1 -2156 3990 3689 834 166 0 0 chr3 129635438 129635589 -88401569 + CT-rich Low_complexity Low_complexity 1 151 0 376 233 0 13 chr3 129635590 129635699 -88401459 - L1M4 LINE L1 -2473 3673 3567 951 242 177 34 chr3 129635705 129636114 -88401044 - MLT1F1 LTR MaLR -105 462 1 2767 199 56 23 chr3 129636115 129636682 -88400476 - L1M4 LINE L1 -2786 3360 2760 2168 104 31 0 chr3 129636682 129636969 -88400189 - AluSx SINE Alu -16 296 1 2767 199 56 23 chr3 129636969 129637153 -88400005 - L1M4 LINE L1 -3386 2760 2584 22 0 0 0 chr3 129637702 129637724 -88399434 + AT_rich Low_complexity Low_complexity 1 22 0 1330 231 40 79 chr3 129638315 129638760 -88398398 - L2 LINE L2 -17 3296 2869 222 192 0 0 chr3 129639932 129639984 -88397174 + CT-rich Low_complexity Low_complexity 1 52 0 29 60 0 0 chr3 129640594 129640644 -88396514 + AT_rich Low_complexity Low_complexity 1 50 0 252 276 69 52 chr3 129642017 129642133 -88395025 - MIR SINE MIR -58 204 87 1264 178 28 5 chr3 129642329 129642543 -88394615 + MER20 DNA MER1_type 1 219 0 2757 266 104 23 chr3 129643356 129644389 -88392769 + L1MEc LINE L1 37 1153 -5243 239 296 21 129 chr3 129644394 129644481 -88392677 + L2 LINE L2 3057 3152 -161 2288 120 0 0 chr3 129644481 129644789 -88392369 - AluSx SINE Alu -3 309 2 239 296 21 129 chr3 129644789 129644934 -88392224 + L2 LINE L2 3152 3264 -49 566 162 45 18 chr3 129644959 129645070 -88392088 + L1 LINE L1 16 129 -7436 6070 185 28 32 chr3 129645070 129646072 -88391086 + L1 LINE L1 338 1368 -6197 273 61 0 0 chr3 129646072 129646105 -88391053 + AluSq/x SINE Alu 91 123 -179 6070 185 28 32 chr3 129646105 129646265 -88390893 + L1 LINE L1 1368 1527 -6038 1577 152 22 4 chr3 129646259 129646529 -88390629 + L1 LINE L1 5461 5735 -1830 * 681 97 177 0 chr3 129646528 129646641 -88390517 + L1P4 LINE L1 5644 5776 -392 * 8889 163 28 5 chr3 129646665 129648343 -88388815 + L1PA15-16 LINE L1 2024 3742 -3107 1300 180 0 9 chr3 129648447 129648669 -88388489 - AluJb SINE Alu -92 220 1 518 259 41 61 chr3 129648761 129649054 -88388104 - L1ME4a LINE L1 -236 5885 5599 2181 221 60 8 chr3 129651394 129651896 -88385262 + L1MEc LINE L1 228 755 -5641 3274 231 48 49 chr3 129651897 129652462 -88384696 + L1MEc LINE L1 2434 2998 -3217 1623 179 35 18 chr3 129652462 129652747 -88384411 + AluJo SINE Alu 1 290 -22 3274 231 48 49 chr3 129652747 129652863 -88384295 + L1MEc LINE L1 2998 3113 -3102 1699 162 0 28 chr3 129652863 129653147 -88384011 + AluJo SINE Alu 5 280 -32 3274 231 48 49 chr3 129653147 129653622 -88383536 + L1MEc LINE L1 3113 3548 -2667 413 267 9 0 chr3 129653610 129653715 -88383443 + L1MEc LINE L1 4011 4116 -2099 * 2308 98 0 0 chr3 129653735 129654030 -88383128 - AluSg SINE Alu -15 295 1 2249 104 3 3 chr3 129654030 129654336 -88382822 - AluSx SINE Alu -5 307 1 2222 113 0 7 chr3 129654572 129654872 -88382286 - AluSx SINE Alu -14 298 1 964 169 16 48 chr3 129655301 129655490 -88381668 + MER5A DNA MER1_type 7 189 0 351 193 0 0 chr3 129656702 129656759 -88380399 - L2 LINE L2 -10 3262 3206 253 275 101 18 chr3 129656740 129656849 -88380309 + L2 LINE L2 3154 3271 -1 * 354 336 78 14 chr3 129657066 129657283 -88379875 - MIR SINE MIR -6 256 26 4499 122 22 5 chr3 129657356 129657989 -88379169 - LTR9B LTR ERV1 0 644 1 5273 89 41 0 chr3 129659327 129660056 -88377102 + L1PA14 LINE L1 5401 6159 -2 2257 89 0 0 chr3 129660529 129660839 -88376319 + AluSc SINE Alu 1 310 0 228 299 134 8 chr3 129660869 129660996 -88376162 - HAL1b LINE L1 -15 1333 1191 324 259 52 78 chr3 129661160 129661430 -88375728 - L1MC4a LINE L1 -1849 5959 5697 2144 134 0 6 chr3 129661547 129661892 -88375266 + AluSx SINE Alu 1 343 0 395 307 36 32 chr3 129661921 129662196 -88374962 - L1MC4a LINE L1 -795 5351 5197 732 54 89 36 chr3 129662862 129662974 -88374184 + L1MB3 LINE L1 6065 6182 -1 257 170 0 19 chr3 129663128 129663181 -88373977 + MIR SINE MIR 101 152 -110 1880 101 34 37 chr3 129663301 129663470 -88373688 - AluSx SINE Alu 0 312 143 1980 136 0 7 chr3 129663470 129663765 -88373393 - AluSx SINE Alu 0 312 20 1880 101 34 37 chr3 129663765 129663892 -88373266 - AluSx SINE Alu -169 143 17 572 154 90 22 chr3 129663942 129664097 -88373061 - L1MB8 LINE L1 -173 6011 5879 608 200 29 0 chr3 129664216 129664356 -88372802 - L1ME4a LINE L1 -4 6117 5974 401 209 121 17 chr3 129664516 129664763 -88372395 - L1MC4a LINE L1 -352 5810 5605 612 289 63 25 chr3 129664767 129665051 -88372107 - L1ME4a LINE L1 -223 5898 5604 365 221 123 41 chr3 129665072 129665194 -88371964 - L1ME4a LINE L1 -1 6120 5989 287 241 72 0 chr3 129665301 129665384 -88371774 - L1ME4a LINE L1 -298 5823 5735 1108 180 60 66 chr3 129665407 129665834 -88371324 - MER76 LTR ERV -199 489 1 222 211 0 42 chr3 129666535 129666547 -88370611 + (TTA)n Simple_repeat Simple_repeat 3 14 -56 1663 169 0 18 chr3 129666547 129666826 -88370332 + AluJb SINE Alu 1 274 -38 222 211 0 42 chr3 129666826 129666839 -88370319 + (TTA)n Simple_repeat Simple_repeat 14 26 -44 203 0 0 36 chr3 129666839 129666867 -88370291 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 222 211 0 42 chr3 129666867 129666911 -88370247 + (TTA)n Simple_repeat Simple_repeat 26 70 0 231 254 16 16 chr3 129667328 129667391 -88369767 - MER77 LTR ERV1 -54 551 489 299 284 75 67 chr3 129667410 129667692 -88369466 + L1MC4a LINE L1 5623 5906 -1902 666 97 0 0 chr3 129667894 129667987 -88369171 + L1MB3 LINE L1 6079 6171 -12 26 64 0 0 chr3 129667987 129668034 -88369124 + AT_rich Low_complexity Low_complexity 1 47 0 336 257 162 40 chr3 129668405 129668553 -88368605 - MIR3 SINE MIR 0 208 43 261 0 0 0 chr3 129668572 129668601 -88368557 + (A)n Simple_repeat Simple_repeat 1 29 0 581 171 171 0 chr3 129668811 129668934 -88368224 + HsTC2 DNA Tc2 1 144 -1754 782 259 85 51 chr3 129668950 129669222 -88367936 + HsTC2 DNA Tc2 1231 1492 -406 2141 76 50 20 chr3 129669222 129669525 -88367633 + AluSx SINE Alu 1 312 0 782 259 85 51 chr3 129669525 129669574 -88367584 + HsTC2 DNA Tc2 1492 1538 -360 2141 80 59 3 chr3 129669574 129669862 -88367296 + AluY SINE Alu 1 304 -7 782 259 85 51 chr3 129669862 129669914 -88367244 + HsTC2 DNA Tc2 1538 1794 -104 256 269 134 27 chr3 129671677 129672051 -88365107 - L1 LINE L1 -2599 3547 3087 2219 71 9 58 chr3 129672051 129672376 -88364782 - AluSg SINE Alu -1 309 1 256 269 134 27 chr3 129672376 129672570 -88364588 - L1 LINE L1 -3059 3087 2915 329 326 81 35 chr3 129672654 129672964 -88364194 - L1 LINE L1 -3381 2765 2442 2633 191 38 64 chr3 129673051 129673678 -88363480 - LTR9 LTR ERV1 0 612 2 365 300 62 72 chr3 129673693 129674279 -88362879 - HAL1b LINE L1 -673 1662 217 1818 140 8 57 chr3 129674289 129674652 -88362506 - MER4A LTR ERV1 0 664 261 505 144 89 0 chr3 129674652 129674742 -88362416 - MER4A LTR ERV1 -566 98 1 1935 175 113 27 chr3 129674972 129675423 -88361735 + LTR2B LTR ERV1 1 490 0 2550 181 49 32 chr3 129675423 129676081 -88361077 + Harlequin LTR ERV1 1 620 -6276 1649 87 53 1 chr3 129676081 129676334 -88360824 - LTR21A LTR ERV1 -207 298 1 2321 100 3 31 chr3 129676559 129676880 -88360278 + AluSp SINE Alu 1 312 -1 388 164 14 0 chr3 129677095 129677168 -88359990 + L1PA13 LINE L1 2 75 -6712 * 19531 180 37 13 chr3 129677159 129680112 -88357046 + L1PA13 LINE L1 637 3520 -3294 1793 142 12 0 chr3 129680112 129680366 -88356792 + AluSx SINE Alu 1 257 -55 19531 180 37 13 chr3 129680366 129683571 -88353587 + L1PA13 LINE L1 3520 6813 -1 10294 176 155 40 chr3 129683719 129684727 -88352431 - L1PA12 LINE L1 -1552 6032 5142 527 221 0 0 chr3 129684727 129684813 -88352345 - AluS SINE Alu -226 87 2 10294 176 155 40 chr3 129684813 129685131 -88352027 - L1PA12 LINE L1 -2442 5142 4862 2209 116 3 0 chr3 129685131 129685424 -88351734 - AluSg SINE Alu -16 294 1 10294 176 155 40 chr3 129685424 129686403 -88350755 - L1PA12 LINE L1 -2722 4862 3998 1564 118 0 0 chr3 129686403 129686614 -88350544 + AluSg/x SINE Alu 85 295 -17 10294 176 155 40 chr3 129686614 129687126 -88350032 - L1PA12 LINE L1 -3586 3998 2758 2108 130 0 37 chr3 129687126 129687448 -88349710 - AluSx SINE Alu -2 310 1 916 147 96 0 chr3 129687450 129687607 -88349551 - AluSg/x SINE Alu -3 307 136 6276 99 220 108 chr3 129687607 129689123 -88348035 - pTR5 LTR ERV1 -6 2432 747 1215 110 0 0 chr3 129689123 129689277 -88347881 - AluSq SINE Alu -159 154 1 12604 152 21 9 chr3 129689279 129691752 -88345406 - L1PA12 LINE L1 -4811 2770 1 310 317 74 48 chr3 129691790 129692020 -88345138 - L2 LINE L2 -558 2756 2521 234 252 88 34 chr3 129692932 129693079 -88344079 - L1ME4a LINE L1 0 6121 5967 213 195 0 0 chr3 129693508 129693549 -88343609 + (CCCCG)n Simple_repeat Simple_repeat 1 41 0 864 280 112 27 chr3 129695776 129696265 -88340893 + L2 LINE L2 2698 3309 -4 1618 213 27 16 chr3 129696472 129696843 -88340315 - L1ME2 LINE L1 -93 6071 5697 5478 140 52 7 chr3 129699368 129700726 -88336432 - L1PA16 LINE L1 0 6166 4750 4689 189 8 205 chr3 129700729 129702976 -88334182 + L1PA16 LINE L1 2926 4730 -1416 200 279 139 13 chr3 129705165 129705244 -88331914 + MIR SINE MIR 32 120 -88 467 305 0 20 chr3 129705340 129705491 -88331667 - MER5B DNA MER1_type -30 148 1 2139 120 0 7 chr3 129706147 129706446 -88330712 - AluSg SINE Alu -13 297 1 189 312 26 26 chr3 129706533 129706610 -88330548 + MIR3 SINE MIR 125 201 -7 2381 92 7 0 chr3 129706808 129707114 -88330044 + AluSc SINE Alu 1 308 -1 2363 88 3 0 chr3 129707123 129707418 -88329740 + AluSp SINE Alu 1 296 -17 2350 122 61 0 chr3 129707517 129707860 -88329298 - THE1B LTR MaLR 0 364 1 23 33 0 0 chr3 129708533 129708563 -88328595 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr3 129709569 129709593 -88327565 + AT_rich Low_complexity Low_complexity 1 24 0 2332 105 0 0 chr3 129709930 129710234 -88326924 - AluSx SINE Alu -8 304 1 2709 29 0 10 chr3 129711011 129711321 -88325837 - AluY SINE Alu -4 307 1 1769 167 7 4 chr3 129711503 129711809 -88325349 - AluSx SINE Alu 0 312 6 30 45 0 0 chr3 129713726 129713770 -88323388 + AT_rich Low_complexity Low_complexity 1 44 0 211 77 135 0 chr3 129714507 129714559 -88322599 + (TATAG)n Simple_repeat Simple_repeat 2 60 0 1654 153 0 8 chr3 129716522 129716770 -88320388 - AluJo SINE Alu -19 293 48 942 60 0 0 chr3 129716770 129716886 -88320272 + AluY SINE Alu 193 308 -3 369 138 0 181 chr3 129716888 129716982 -88320176 - AluJ/FLAM SINE Alu -240 62 1 2382 52 0 14 chr3 129717990 129718307 -88318851 + AluY SINE Alu 1 313 0 181 261 0 22 chr3 129719805 129719851 -88317307 - L2 LINE L2 0 3272 3228 195 130 29 14 chr3 129720594 129720663 -88316495 + (TA)n Simple_repeat Simple_repeat 1 70 0 540 257 28 105 chr3 129720933 129721302 -88315856 - L1MC/D LINE L1 -600 5554 5258 2195 117 0 13 chr3 129721601 129721910 -88315248 - AluSx SINE Alu -7 305 1 340 262 126 0 chr3 129722009 129722112 -88315046 + MIR SINE MIR 57 172 -90 696 272 183 55 chr3 129722115 129722751 -88314407 - L2 LINE L2 -7 3306 2585 380 305 112 30 chr3 129723215 129723510 -88313648 - HAL1b LINE L1 -719 629 311 415 277 81 45 chr3 129723536 129723619 -88313539 - L1MEd LINE L1 -4910 1209 1130 2307 94 10 13 chr3 129723619 129723927 -88313231 - AluSg SINE Alu -3 307 1 415 277 81 45 chr3 129723927 129724153 -88313005 - L1MEd LINE L1 -4989 1130 889 1737 131 10 76 chr3 129724362 129724676 -88312482 + AluSx SINE Alu 1 293 -19 219 114 0 0 chr3 129724996 129725031 -88312127 + (AATAG)n Simple_repeat Simple_repeat 2 36 0 932 216 19 14 chr3 129725265 129725473 -88311685 + MLT1A1 LTR MaLR 1 209 -165 * 5772 118 157 34 chr3 129725449 129726571 -88310587 + MER52C LTR ERV1 19 1278 0 1051 166 28 6 chr3 129726571 129726752 -88310406 + MLT1A1 LTR MaLR 181 365 0 2038 120 0 29 chr3 129727517 129727847 -88309311 + AluSx SINE Alu 1 299 -13 280 318 131 19 chr3 129729344 129729451 -88307707 + MIR3 SINE MIR 69 187 -21 2130 127 3 16 chr3 129729740 129730054 -88307104 + AluSx SINE Alu 1 310 -2 458 308 121 15 chr3 129730139 129730337 -88306821 + MIR SINE MIR 32 250 -12 412 305 226 37 chr3 129730459 129730836 -88306322 + L2 LINE L2 2513 2960 -354 452 176 0 118 chr3 129730920 129731022 -88306136 + L2 LINE L2 3182 3271 -1 2897 16 0 0 chr3 129731146 129731460 -88305698 - AluYb8 SINE Alu -4 314 1 273 232 179 21 chr3 129731864 129731959 -88305199 - L2 LINE L2 -239 3033 2924 314 239 65 110 chr3 129732073 129732228 -88304930 - L2 LINE L2 -467 2847 2700 1293 179 29 0 chr3 129734537 129734783 -88302375 + AluJb SINE Alu 1 253 -59 193 279 190 0 chr3 129735390 129735469 -88301689 + L2 LINE L2 3192 3285 -28 427 292 49 21 chr3 129735614 129735758 -88301400 - MIR SINE MIR -113 149 2 222 287 103 23 chr3 129736870 129736957 -88300201 + L2 LINE L2 3161 3254 -18 438 269 104 80 chr3 129737074 129737323 -88299835 + MIR SINE MIR 8 262 0 228 231 19 0 chr3 129738403 129738455 -88298703 - L2 LINE L2 -4 3309 3257 586 295 27 16 chr3 129738483 129738666 -88298492 - MIR SINE MIR 0 262 78 4954 146 10 30 chr3 129738778 129739666 -88297492 + L1MB8 LINE L1 5308 6177 -1 226 264 125 42 chr3 129741082 129741113 -88296045 - HAL1b LINE L1 0 1348 1318 469 199 152 46 chr3 129741113 129741264 -88295894 - L1ME4a LINE L1 -56 6065 1193 2379 80 0 16 chr3 129741960 129742272 -88294886 - AluSq SINE Alu -6 307 1 314 359 66 24 chr3 129742328 129742495 -88294663 - L2 LINE L2 0 3272 3099 366 216 211 30 chr3 129742496 129742695 -88294463 + L1ME4a LINE L1 5831 6065 -56 2452 86 0 0 chr3 129742875 129743178 -88293980 - AluSc SINE Alu -6 303 1 2361 144 60 7 chr3 129743622 129743651 -88293507 - L1P LINE L1 -1095 5051 5025 6359 91 40 0 chr3 129743651 129744773 -88292385 - L1PA14 LINE L1 -2 6159 4992 952 37 0 0 chr3 129744780 129744888 -88292270 - L1PA4 LINE L1 -8 6147 6040 2361 144 60 7 chr3 129744888 129745300 -88291858 - L1P LINE L1 -1126 5020 4578 24 39 0 0 chr3 129745403 129745429 -88291729 + GC_rich Low_complexity Low_complexity 1 26 0 262 94 24 47 chr3 129745429 129745514 -88291644 + (CGGGG)n Simple_repeat Simple_repeat 1 83 0 37 0 0 0 chr3 129745514 129745551 -88291607 + GC_rich Low_complexity Low_complexity 1 37 0 181 83 0 83 chr3 129745551 129745623 -88291535 + (CCCCCG)n Simple_repeat Simple_repeat 4 69 0 413 271 60 108 chr3 129745885 129746385 -88290773 - L2 LINE L2 -50 3263 2752 1460 124 58 4 chr3 129746470 129746696 -88290462 + AluSx SINE Alu 61 298 -14 242 258 118 11 chr3 129746954 129747047 -88290111 - L2 LINE L2 -8 3264 3162 616 256 100 0 chr3 129747265 129747445 -88289713 + MIR SINE MIR 31 228 -34 362 192 182 0 chr3 129747461 129747560 -88289598 + MIR SINE MIR 132 248 -14 1343 119 0 0 chr3 129747704 129747881 -88289277 + AluY SINE Alu 1 177 -134 297 288 36 18 chr3 129747933 129748044 -88289114 + L2 LINE L2 2562 2674 -640 1106 90 0 0 chr3 129748061 129748205 -88288953 - AluSg/x SINE Alu -4 308 165 2381 101 0 0 chr3 129748609 129748916 -88288242 + AluSg SINE Alu 1 307 -3 602 191 57 32 chr3 129749944 129750101 -88287057 + MIR SINE MIR 37 197 -65 1040 138 138 5 chr3 129750105 129750294 -88286864 - AluJb SINE Alu -13 299 86 291 309 148 8 chr3 129750388 129750544 -88286614 - MIR SINE MIR -66 142 9 2497 151 3 3 chr3 129751235 129751600 -88285558 - MLT1A1 LTR MaLR 0 365 1 1520 147 184 43 chr3 129751862 129752171 -88284987 + MSTC LTR MaLR 1 374 -54 2236 109 3 0 chr3 129752171 129752465 -88284693 + AluSx SINE Alu 1 295 -17 1520 147 184 43 chr3 129752465 129752530 -88284628 + MSTC LTR MaLR 374 428 0 258 185 77 0 chr3 129753853 129753918 -88283240 - MER91C DNA MER1_type -32 108 39 3275 278 106 8 chr3 129754118 129755189 -88281969 + L2 LINE L2 39 1214 -2100 2118 114 3 13 chr3 129755189 129755516 -88281642 - AluSq SINE Alu 0 313 1 2139 128 3 3 chr3 129755635 129755939 -88281219 + AluSx SINE Alu 1 304 -8 23 68 0 0 chr3 129755977 129756021 -88281137 + AT_rich Low_complexity Low_complexity 1 44 0 408 289 41 0 chr3 129756447 129756568 -88280590 + MIR SINE MIR 81 206 -56 1646 169 3 14 chr3 129756877 129757191 -88279967 - AluSx SINE Alu 0 311 1 226 264 125 42 chr3 129759824 129759855 -88277303 - HAL1b LINE L1 0 1348 1318 701 203 85 89 chr3 129759855 129760126 -88277032 - L1ME4a LINE L1 -56 6065 1193 2379 80 0 16 chr3 129760699 129761011 -88276147 - AluSq SINE Alu -6 307 1 314 359 66 24 chr3 129761067 129761234 -88275924 - L2 LINE L2 0 3272 3099 402 221 207 31 chr3 129761235 129761457 -88275701 + L1ME4a LINE L1 5831 6091 -30 2445 97 0 0 chr3 129761619 129761927 -88275231 - AluSc SINE Alu 0 309 2 273 29 0 0 chr3 129761927 129761961 -88275197 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2148 119 0 3 chr3 129761961 129762247 -88274911 - AluSq SINE Alu -28 285 1 2165 125 3 3 chr3 129762366 129762670 -88274488 + AluSx SINE Alu 1 304 -8 23 68 0 0 chr3 129762708 129762752 -88274406 + AT_rich Low_complexity Low_complexity 1 44 0 408 289 41 0 chr3 129763178 129763299 -88273859 + MIR SINE MIR 81 206 -56 1881 145 0 7 chr3 129763605 129763918 -88273240 - AluSx SINE Alu 0 311 1 342 0 0 0 chr3 129765671 129765709 -88271449 + (TG)n Simple_repeat Simple_repeat 1 38 0 253 349 18 46 chr3 129766453 129766562 -88270596 - MIR SINE MIR -108 154 49 889 246 47 0 chr3 129766841 129767056 -88270102 + MIR SINE MIR 28 252 -10 1033 179 28 179 chr3 129767064 129767500 -88269658 - MLT2D LTR ERVL -5 409 40 289 316 13 0 chr3 129768463 129768539 -88268619 + LTR67 LTR ERVL 114 190 -367 235 148 33 49 chr3 129768798 129768859 -88268299 + MLT2E LTR ERVL 517 576 -52 * 318 247 24 12 chr3 129768829 129768914 -88268244 + LTR33A LTR ERVL 438 523 0 185 65 32 0 chr3 129769583 129769614 -88267544 + (CAA)n Simple_repeat Simple_repeat 2 33 0 378 277 155 40 chr3 129769703 129769851 -88267307 + MIR3 SINE MIR 2 166 -42 451 281 179 0 chr3 129770918 129771114 -88266044 - MIR SINE MIR -12 250 20 512 303 48 10 chr3 129771429 129771637 -88265521 - MIR SINE MIR 0 262 47 337 278 37 0 chr3 129771874 129771982 -88265176 - MIR3 SINE MIR -14 194 83 399 265 129 66 chr3 129772127 129772429 -88264729 + L1ME4a LINE L1 5798 6118 -3 7272 183 62 13 chr3 129772453 129774942 -88262216 - L1MB8 LINE L1 -6 6172 3558 522 249 17 0 chr3 129774947 129775124 -88262034 - L1MB8 LINE L1 -2944 3202 3023 31947 32 17 1 chr3 129775125 129781148 -88256010 - L1PA2 LINE L1 -4 6151 3 1110 171 41 30 chr3 129781148 129781417 -88255741 - L1MB8 LINE L1 -3103 3043 2772 826 234 23 35 chr3 129781396 129781590 -88255568 - L1M4 LINE L1 -1398 4748 4556 * 2660 145 21 9 chr3 129781590 129782011 -88255147 - MSTB LTR MaLR 0 426 1 826 234 23 35 chr3 129782011 129782073 -88255085 - L1M4 LINE L1 -1590 4556 4495 488 219 43 55 chr3 129782125 129782289 -88254869 - L2 LINE L2 0 3313 3152 1249 173 28 35 chr3 129782292 129782546 -88254612 + L1ME3A LINE L1 5899 6150 -20 5863 254 157 23 chr3 129782546 129782650 -88254508 - L2 LINE L2 -148 3165 3076 2021 136 4 0 chr3 129782650 129782973 -88254185 - AluSx SINE Alu 0 326 3 5863 254 157 23 chr3 129782973 129784564 -88252594 - L2 LINE L2 -237 3076 1701 2268 102 7 7 chr3 129784564 129784888 -88252270 + AluSp SINE Alu 1 313 0 5863 254 157 23 chr3 129784888 129785727 -88251431 - L2 LINE L2 -1612 1701 285 412 232 5 116 chr3 129785878 129786085 -88251073 + L2 LINE L2 3125 3308 -5 403 294 88 48 chr3 129786641 129786869 -88250289 + L1MC/D LINE L1 5380 5616 -2192 1952 195 8 19 chr3 129788022 129788391 -88248767 + MLT1A1 LTR MaLR 1 365 0 198 237 17 0 chr3 129790135 129790194 -88246964 - MIR SINE MIR -76 132 73 27 49 0 0 chr3 129790560 129790601 -88246557 + AT_rich Low_complexity Low_complexity 1 41 0 482 260 48 7 chr3 129791682 129791828 -88245330 + MIR SINE MIR 17 168 -94 3874 160 80 13 chr3 129791845 129792612 -88244546 + L1MB7 LINE L1 5366 6183 -1 1774 246 64 11 chr3 129792634 129793089 -88244069 + LTR16C LTR ERVL 3 481 -10 302 272 76 0 chr3 129793785 129793877 -88243281 - L2 LINE L2 -21 3251 3153 633 255 16 21 chr3 129794627 129794808 -88242350 - MER5B DNA MER1_type 0 189 2 1785 165 39 0 chr3 129795928 129796213 -88240945 - AluJo SINE Alu -16 296 1 324 162 68 0 chr3 129796639 129796713 -88240445 + MIR SINE MIR 156 234 -28 186 161 8 68 chr3 129796748 129796866 -88240292 + (TTA)n Simple_repeat Simple_repeat 2 112 0 836 10 0 0 chr3 129798196 129798335 -88238823 + AluYa5/8 SINE Alu 215 353 0 390 326 36 0 chr3 129798361 129798499 -88238659 + MIR SINE MIR 48 190 -72 21 0 0 0 chr3 129798925 129798946 -88238212 + AT_rich Low_complexity Low_complexity 1 21 0 2086 122 39 0 chr3 129801141 129801453 -88235705 - MER46B DNA MER2_type 0 236 38 294 258 30 18 chr3 129802991 129803158 -88234000 + (TG)n Simple_repeat Simple_repeat 2 170 0 471 253 43 29 chr3 129804647 129804837 -88232321 + MIR SINE MIR 14 206 -56 312 70 0 0 chr3 129806355 129806398 -88230760 + (CA)n Simple_repeat Simple_repeat 2 44 0 1577 180 21 58 chr3 129806567 129806944 -88230214 + MLT1A1 LTR MaLR 3 365 0 381 162 0 0 chr3 129807132 129807200 -88229958 + (CA)n Simple_repeat Simple_repeat 2 69 0 211 125 0 75 chr3 129807616 129807656 -88229502 - MIR SINE MIR -6 256 220 210 71 0 0 chr3 129808101 129808129 -88229029 + (TCTCCC)n Simple_repeat Simple_repeat 2 29 0 9858 45 119 8 chr3 129808129 129809377 -88227781 + SVA Other Other 1 1386 0 21 36 0 0 chr3 129809490 129809518 -88227640 + AT_rich Low_complexity Low_complexity 1 28 0 372 290 48 90 chr3 129809540 129810082 -88227076 + L1MC4a LINE L1 5596 6117 -4 230 331 101 50 chr3 129810663 129810941 -88226217 - L2 LINE L2 -1 3271 2980 184 266 38 25 chr3 129812192 129812271 -88224887 + MIR SINE MIR 70 149 -113 487 228 8 31 chr3 129812598 129812725 -88224433 - MIR SINE MIR -89 173 50 286 264 264 0 chr3 129812796 129812902 -88224256 - MIR SINE MIR -73 189 56 378 247 167 0 chr3 129813051 129813201 -88223957 + MIR SINE MIR 58 232 -30 293 271 39 39 chr3 129814270 129814425 -88222733 - MIR SINE MIR -79 183 29 297 328 78 0 chr3 129815147 129815263 -88221895 - MIR3 SINE MIR -81 127 3 586 236 81 0 chr3 129816192 129816353 -88220805 - MER69A DNA AcHobo -1 176 3 1637 114 3 44 chr3 129816573 129816870 -88220288 + L1MA9 LINE L1 6022 6306 -6 22 35 0 0 chr3 129816871 129816900 -88220258 + AT_rich Low_complexity Low_complexity 1 29 0 2252 118 0 0 chr3 129817065 129817361 -88219797 - AluSx SINE Alu -16 296 1 1013 171 0 0 chr3 129818577 129818741 -88218417 + FRAM SINE Alu 2 165 -1 505 274 111 0 chr3 129819484 129819637 -88217521 - MER91A DNA MER1_type -13 183 14 490 227 43 7 chr3 129819901 129820042 -88217116 + MIR3 SINE MIR 50 195 -13 213 353 15 0 chr3 129821742 129821810 -88215348 + L2 LINE L2 3121 3189 -83 2014 143 0 3 chr3 129822871 129823195 -88213963 + AluSx SINE Alu 1 323 0 353 211 211 0 chr3 129823794 129823898 -88213260 + MER94 DNA DNA 9 134 0 1376 146 59 53 chr3 129825336 129825401 -88211757 - MER33 DNA MER1_type -2261 324 261 2069 131 3 0 chr3 129825401 129825691 -88211467 - AluSx SINE Alu -21 291 1 1376 146 59 53 chr3 129825691 129825947 -88211211 - MER33 DNA MER1_type -2324 261 1 936 128 0 0 chr3 129825961 129826094 -88211064 + FLAM_C SINE Alu 1 133 0 1054 289 112 24 chr3 129827907 129828685 -88208473 - L2 LINE L2 -4 3309 2461 275 258 150 8 chr3 129828971 129829091 -88208067 - MER103 DNA DNA -1 165 29 194 296 0 0 chr3 129829198 129829252 -88207906 - MIR SINE MIR 0 262 209 2236 117 0 0 chr3 129829357 129829664 -88207494 + AluSx SINE Alu 1 307 -5 183 162 0 0 chr3 129832029 129832066 -88205092 + (CA)n Simple_repeat Simple_repeat 2 38 0 233 250 78 0 chr3 129833077 129833141 -88204017 - MIR3 SINE MIR -13 195 127 211 286 0 0 chr3 129834103 129834152 -88203006 - MER91A DNA MER1_type -147 49 1 1887 155 3 16 chr3 129834251 129834567 -88202591 + AluJb SINE Alu 1 312 0 289 340 107 24 chr3 129834856 129835062 -88202096 + L2 LINE L2 3001 3223 -49 228 377 0 0 chr3 129836037 129836114 -88201044 + (CA)n Simple_repeat Simple_repeat 2 78 0 860 186 123 21 chr3 129836156 129836392 -88200766 - MIR SINE MIR 0 262 3 434 248 72 0 chr3 129836639 129836764 -88200394 - MIR SINE MIR -112 150 17 2344 93 3 10 chr3 129836918 129837231 -88199927 + AluSx SINE Alu 1 311 -1 1702 16 0 0 chr3 129837332 129837523 -88199635 + L1PA3 LINE L1 5961 6151 -4 215 216 0 0 chr3 129838030 129838067 -88199091 + (CA)n Simple_repeat Simple_repeat 2 38 0 793 254 42 0 chr3 129838718 129838907 -88198251 + MER117 DNA MER1_type 1 197 0 229 250 53 53 chr3 129839084 129839236 -88197922 - L1ME4a LINE L1 -1 6120 5969 268 294 29 10 chr3 129839337 129839439 -88197719 - L1ME4a LINE L1 -330 5791 5688 301 212 76 0 chr3 129839989 129840055 -88197103 + L1ME3 LINE L1 6064 6134 -28 201 286 71 0 chr3 129840192 129840248 -88196910 + L2 LINE L2 3144 3203 -69 1960 157 0 7 chr3 129842069 129842369 -88194789 - AluJb SINE Alu -12 300 3 597 269 40 10 chr3 129843571 129843781 -88193377 + MIR SINE MIR 38 252 -10 362 273 91 0 chr3 129843810 129843931 -88193227 + MIR SINE MIR 12 143 -119 236 272 0 33 chr3 129845445 129845537 -88191621 + C-rich Low_complexity Low_complexity 5 93 0 324 289 116 33 chr3 129847499 129847741 -88189417 + MIR SINE MIR 1 262 0 2140 135 0 3 chr3 129847851 129848163 -88188995 + AluSx SINE Alu 1 311 -1 207 315 41 0 chr3 129848195 129848268 -88188890 - MIR SINE MIR -110 152 77 394 204 60 16 chr3 129848563 129848718 -88188440 + L1ME LINE L1 5284 5450 -740 319 198 60 0 chr3 129848723 129848798 -88188360 - MIR SINE MIR -70 138 75 245 265 73 0 chr3 129848799 129848867 -88188291 + L1ME LINE L1 5437 5509 -657 882 214 50 25 chr3 129848904 129849142 -88188016 + MIR SINE MIR 8 251 -11 1357 203 34 69 chr3 129849243 129849477 -88187681 + Charlie7 DNA MER1_type 1792 2008 -604 1699 176 0 26 chr3 129849477 129849783 -88187375 + AluJb SINE Alu 7 304 -8 1357 203 34 69 chr3 129849783 129849956 -88187202 + Charlie7 DNA MER1_type 2008 2185 -427 318 344 0 0 chr3 129850087 129850180 -88186978 + MLT1K LTR MaLR 150 242 -346 1669 190 80 6 chr3 129850210 129850562 -88186596 - MLT1B LTR MaLR -12 378 1 669 202 89 58 chr3 129850563 129850666 -88186492 + Charlie7 DNA MER1_type 2197 2295 -317 1967 161 3 3 chr3 129850666 129850970 -88186188 - AluJb SINE Alu -8 304 1 669 202 89 58 chr3 129850970 129851094 -88186064 + Charlie7 DNA MER1_type 2295 2437 -175 1858 125 59 7 chr3 129851094 129851381 -88185777 + AluSx SINE Alu 1 302 -10 669 202 89 58 chr3 129851381 129851444 -88185714 + Charlie7 DNA MER1_type 2437 2497 -115 2139 80 0 4 chr3 129851889 129852151 -88185007 - AluY SINE Alu -14 297 37 476 293 131 32 chr3 129852214 129852639 -88184519 + MLT1K LTR MaLR 26 536 -52 1122 210 136 74 chr3 129853101 129853534 -88183624 + MLT1D LTR MaLR 46 505 0 366 304 116 64 chr3 129853553 129853574 -88183584 - MLT1K LTR MaLR -158 430 412 405 0 0 0 chr3 129853574 129853619 -88183539 + (CA)n Simple_repeat Simple_repeat 1 45 0 366 304 116 64 chr3 129853619 129853943 -88183215 - MLT1K LTR MaLR -176 412 67 202 269 0 64 chr3 129854345 129854423 -88182735 + CT-rich Low_complexity Low_complexity 1 73 0 2739 200 56 4 chr3 129855155 129855689 -88181469 - MER68 LTR ERV1 0 562 1 392 125 16 0 chr3 129856200 129856267 -88180891 - AluSg/x SINE Alu -63 239 187 501 262 122 0 chr3 129857457 129857629 -88179529 + MIR SINE MIR 67 259 -3 317 228 24 81 chr3 129858097 129858220 -88178938 + L1MC4 LINE L1 7808 7923 -119 247 348 9 0 chr3 129858236 129858348 -88178810 + L1MC4 LINE L1 7914 8026 -16 232 256 16 93 chr3 129858663 129858792 -88178366 + LTR67 LTR ERVL 433 551 -6 1734 157 24 0 chr3 129859620 129859913 -88177245 - AluSx SINE Alu -12 300 1 1861 146 32 67 chr3 129861081 129861485 -88175673 + MLT1B LTR MaLR 1 390 0 219 330 32 32 chr3 129861685 129861779 -88175379 + MIR SINE MIR 49 142 -120 975 231 202 10 chr3 129863251 129863616 -88173542 + LTR50 LTR ERVL 326 770 -25 1777 179 3 3 chr3 129863616 129863907 -88173251 - AluJb SINE Alu -21 291 1 975 231 202 10 chr3 129863907 129863927 -88173231 + LTR50 LTR ERVL 770 785 -10 404 179 128 43 chr3 129863942 129864059 -88173099 - MLT1B LTR MaLR -4 463 337 * 3380 161 28 29 chr3 129864029 129864667 -88172491 + MER41B LTR ERV1 5 469 -9 1252 187 29 105 chr3 129864672 129864987 -88172171 - MLT1B LTR MaLR -99 291 1 254 262 12 12 chr3 129865040 129865124 -88172034 + MIR SINE MIR 70 153 -109 360 270 164 20 chr3 129865790 129865942 -88171216 - MER5A DNA MER1_type -6 183 10 593 189 72 83 chr3 129865968 129866148 -88171010 - MER5B DNA MER1_type 0 178 1 463 275 161 0 chr3 129866160 129866309 -88170849 - MER5A DNA MER1_type -5 184 12 892 120 99 78 chr3 129866334 129866525 -88170633 - MER20 DNA MER1_type -5 214 20 2172 161 83 64 chr3 129866695 129867178 -88169980 + MLT1D LTR MaLR 1 492 -13 475 273 93 0 chr3 129867508 129867669 -88169489 + MER5B DNA MER1_type 3 178 0 324 351 18 0 chr3 129868071 129868182 -88168976 + L2 LINE L2 2977 3089 -183 696 162 51 0 chr3 129868193 129868310 -88168848 - MER20 DNA MER1_type -96 123 1 228 283 142 17 chr3 129869319 129869439 -88167719 - L2 LINE L2 -10 3303 3169 216 284 12 25 chr3 129870465 129870546 -88166612 - MIR3 SINE MIR -5 203 124 1884 158 0 3 chr3 129870714 129871005 -88166153 - AluJb SINE Alu -1 311 22 803 215 30 88 chr3 129871228 129871409 -88165749 - MLT1D LTR MaLR 0 505 327 1747 93 4 0 chr3 129871409 129871634 -88165524 + AluSp SINE Alu 83 308 -5 803 215 30 88 chr3 129871634 129871763 -88165395 - MLT1D LTR MaLR -178 327 192 1302 187 119 4 chr3 129871793 129872069 -88165089 + AluJb SINE Alu 2 306 0 888 235 132 0 chr3 129872152 129872424 -88164734 - LTR50 LTR ERVL -162 633 326 893 181 25 45 chr3 129872661 129872860 -88164298 - MLT1D LTR MaLR -309 196 2 2220 88 0 58 chr3 129873840 129874168 -88162990 - AluSg SINE Alu 0 310 2 2396 70 20 13 chr3 129874246 129874547 -88162611 - AluY SINE Alu -8 303 1 240 269 62 7 chr3 129874547 129874692 -88162466 + MER113 DNA MER1_type? 30 182 -339 * 392 107 0 0 chr3 129874686 129874742 -88162416 - Alu SINE Alu -2 300 245 1069 140 7 0 chr3 129874743 129874893 -88162265 - AluSq/x SINE Alu -162 151 1 453 116 0 0 chr3 129875909 129875978 -88161180 + (CA)n Simple_repeat Simple_repeat 2 70 0 2331 92 13 0 chr3 129876493 129876798 -88160360 + AluSx SINE Alu 1 309 -3 1182 218 50 49 chr3 129877147 129877171 -88159987 - L1MDa LINE L1 -3620 2920 2898 2167 122 7 0 chr3 129877171 129877467 -88159691 - AluSx SINE Alu -14 298 1 1182 218 50 49 chr3 129877467 129877894 -88159264 - L1MDa LINE L1 -3642 2898 2480 459 35 0 0 chr3 129878976 129879033 -88158125 + (CA)n Simple_repeat Simple_repeat 2 58 0 186 167 0 0 chr3 129879235 129879271 -88157887 + (CA)n Simple_repeat Simple_repeat 2 37 0 582 227 135 27 chr3 129879367 129879426 -88157732 - MIR SINE MIR -6 256 205 1388 128 22 0 chr3 129879426 129879652 -88157506 - L1MA8 LINE L1 0 6291 6061 582 227 135 27 chr3 129879652 129879777 -88157381 - MIR SINE MIR -57 205 52 4932 137 29 63 chr3 129880026 129880772 -88156386 - L1MA7 LINE L1 -7 6284 5612 2227 128 0 0 chr3 129880772 129881084 -88156074 - AluSq SINE Alu -1 312 1 4932 137 29 63 chr3 129881084 129881577 -88155581 - L1MA7 LINE L1 -679 5612 5104 575 318 41 20 chr3 129882034 129882229 -88154929 + MIR3 SINE MIR 1 199 -9 1310 199 84 4 chr3 129884011 129884273 -88152885 + LTR10B LTR ERV1 313 547 0 4239 261 56 28 chr3 129884273 129886474 -88150684 + LTR10B-int LTR ERV1 6 2043 -4606 * 11380 271 37 24 chr3 129886472 129890231 -88146927 + HERVI LTR ERV1 2967 7784 -1 1198 205 41 4 chr3 129890322 129890570 -88146588 + LTR10B LTR ERV1 317 547 0 619 214 29 80 chr3 129892646 129892884 -88144274 + L1ME4a LINE L1 5677 5902 -219 432 147 0 0 chr3 129893751 129893826 -88143332 + (CA)n Simple_repeat Simple_repeat 2 76 0 216 97 0 0 chr3 129894608 129894639 -88142519 + (A)n Simple_repeat Simple_repeat 1 31 0 516 289 50 44 chr3 129895434 129895804 -88141354 - HAL1b LINE L1 -816 1599 417 2536 59 0 3 chr3 129896883 129897186 -88139972 + AluY SINE Alu 1 302 -9 812 167 0 0 chr3 129897320 129897440 -88139718 + FLAM_C SINE Alu 1 120 -23 248 360 79 43 chr3 129897607 129897746 -88139412 - MIR3 SINE MIR -9 199 56 603 265 47 28 chr3 129898089 129898300 -88138858 - LTR67 LTR ERVL 0 557 343 292 367 47 20 chr3 129898529 129898679 -88138479 - LTR67 LTR ERVL -386 171 18 1178 237 174 18 chr3 129898746 129899189 -88137969 + LTR33 LTR ERVL 1 512 -9 2182 126 3 0 chr3 129899494 129899795 -88137363 - AluSx SINE Alu -10 302 1 4516 131 26 63 chr3 129899872 129900634 -88136524 + MER50 LTR ERV1 1 734 0 9716 147 84 37 chr3 129900676 129902444 -88134714 + MER50-int LTR ERV1 1 1850 -5355 1162 153 6 5 chr3 129902440 129902650 -88134508 + MER50-int LTR ERV1 1004 1177 -3703 * 6058 182 63 26 chr3 129902645 129903917 -88133241 + MER50-int LTR ERV1 3225 4543 -2662 * 9960 121 23 13 chr3 129903907 129905409 -88131749 + MER50-int LTR ERV1 4702 6217 -988 2491 104 0 22 chr3 129905390 129905756 -88131402 + MER50-int LTR ERV1 6840 7197 -8 * 4515 137 25 49 chr3 129905756 129906338 -88130820 + MER50 LTR ERV1 1 564 -170 2169 109 0 0 chr3 129906338 129906645 -88130513 - AluSx SINE Alu 0 307 1 4515 137 25 49 chr3 129906645 129906813 -88130345 + MER50 LTR ERV1 564 734 0 198 0 0 0 chr3 129907700 129907722 -88129436 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 1615 149 69 14 chr3 129907735 129908010 -88129148 + AluJo SINE Alu 1 290 -22 227 372 53 26 chr3 129908152 129908265 -88128893 - L2 LINE L2 -19 3253 3138 554 301 26 18 chr3 129908489 129908718 -88128440 - L3 LINE CR1 -661 916 686 267 245 248 8 chr3 129908772 129908902 -88128256 - MIR SINE MIR -58 150 45 22 35 0 0 chr3 129908947 129908976 -88128182 + AT_rich Low_complexity Low_complexity 1 29 0 240 35 0 0 chr3 129908976 129909005 -88128153 + (CCCCCT)n Simple_repeat Simple_repeat 5 33 0 1625 187 7 4 chr3 129909014 129909292 -88127866 - AluJo SINE Alu -33 279 1 21 36 0 0 chr3 129909315 129909343 -88127815 + AT_rich Low_complexity Low_complexity 1 28 0 812 263 104 69 chr3 129909532 129909984 -88127174 - L1MC4a LINE L1 -258 5904 5437 547 373 165 10 chr3 129910034 129910538 -88126620 - L3 LINE CR1 -899 678 97 1168 285 99 15 chr3 129911773 129912166 -88124992 + LTR16A LTR ERVL 16 441 -9 904 315 85 0 chr3 129912768 129913120 -88124038 - LTR16B LTR ERVL 0 464 83 856 281 37 40 chr3 129913433 129913801 -88123357 - LTR16B LTR ERVL -8 442 104 609 202 36 89 chr3 129915190 129915231 -88121927 - MIR SINE MIR -37 225 183 2387 98 0 13 chr3 129915231 129915546 -88121612 - AluSx SINE Alu -1 311 1 609 202 36 89 chr3 129915546 129915672 -88121486 - MIR SINE MIR -79 183 67 323 227 114 74 chr3 129916815 129916991 -88120167 + MER5A DNA MER1_type 4 186 -3 2388 103 0 0 chr3 129917037 129917349 -88119809 + AluSx SINE Alu 1 312 0 3231 187 42 74 chr3 129917374 129918113 -88119045 + L1ME1 LINE L1 4614 5375 -791 2301 110 0 0 chr3 129918113 129918422 -88118736 + AluSx SINE Alu 1 309 -3 3231 187 42 74 chr3 129918422 129919283 -88117875 + L1ME1 LINE L1 5375 6163 -3 276 316 102 6 chr3 129919336 129919513 -88117645 - L2 LINE L2 -12 3301 3108 757 192 102 18 chr3 129920049 129920216 -88116942 + MER5A DNA MER1_type 2 182 -7 737 140 93 33 chr3 129920522 129920672 -88116486 - FRAM SINE Alu 0 176 18 223 298 53 32 chr3 129920819 129920913 -88116245 + MIR SINE MIR 45 140 -68 535 275 39 53 chr3 129921776 129921983 -88115175 - MIR SINE MIR -16 246 43 319 295 133 60 chr3 129922018 129922184 -88114974 + LTR33 LTR ERVL 1 178 -343 2335 105 0 3 chr3 129922215 129922528 -88114630 + AluSx SINE Alu 1 312 0 1084 237 101 53 chr3 129923668 129924368 -88112790 - L1MEc LINE L1 -3881 2515 1747 3503 200 78 45 chr3 129924485 129924528 -88112630 - L1ME1 LINE L1 -7 6419 6379 2051 139 7 10 chr3 129924528 129924831 -88112327 - AluSx SINE Alu -10 302 1 3503 200 78 45 chr3 129924831 129924918 -88112240 - L1ME1 LINE L1 -47 6379 6296 2143 116 0 10 chr3 129924918 129925211 -88111947 - AluSx SINE Alu -22 290 1 3503 200 78 45 chr3 129925211 129926054 -88111104 - L1ME1 LINE L1 -130 6296 5430 2959 246 27 31 chr3 129926103 129927064 -88110094 - L1ME1 LINE L1 -2275 4131 3175 2800 217 60 41 chr3 129927062 129928007 -88109151 - L1ME1 LINE L1 -4383 2023 1061 * 2574 189 31 12 chr3 129927988 129928507 -88108651 - L1PA16 LINE L1 -1850 4296 3768 * 5291 163 28 46 chr3 129928505 129928603 -88108555 + L1PA16 LINE L1 4286 4384 -1782 812 178 0 0 chr3 129928603 129928721 -88108437 + FLAM_C SINE Alu 1 118 -15 5291 163 28 46 chr3 129928721 129928773 -88108385 + L1PA16 LINE L1 4384 4435 -1731 180 0 0 0 chr3 129928773 129928793 -88108365 + (CA)n Simple_repeat Simple_repeat 1 20 0 5291 163 28 46 chr3 129928793 129930316 -88106842 + L1PA16 LINE L1 4435 5910 -256 1917 161 3 10 chr3 129930316 129930621 -88106537 + AluSx SINE Alu 1 303 -9 5291 163 28 46 chr3 129930621 129930874 -88106284 + L1PA16 LINE L1 5910 6166 0 971 239 60 11 chr3 129930869 129931153 -88106005 - L1ME1 LINE L1 -5341 1068 771 * 2027 101 18 0 chr3 129931787 129932109 -88105049 + AluSx SINE Alu 1 327 0 22 0 0 0 chr3 129932318 129932340 -88104818 + AT_rich Low_complexity Low_complexity 1 22 0 15065 185 37 12 chr3 129932340 129932464 -88104694 - L1PB2 LINE L1 -2 6206 6087 2057 154 0 0 chr3 129932464 129932776 -88104382 - AluSx SINE Alu 0 312 1 15065 185 37 12 chr3 129932776 129934413 -88102745 - L1PB2 LINE L1 -121 6087 4492 333 0 0 0 chr3 129934413 129934450 -88102708 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 15065 185 37 12 chr3 129934450 129938108 -88099050 - L1PB2 LINE L1 -1716 4492 633 180 0 0 0 chr3 129938108 129938128 -88099030 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 15065 185 37 12 chr3 129938128 129938770 -88098388 - L1PB2 LINE L1 -5575 633 9 8691 178 36 4 chr3 129938738 129940331 -88096827 - L1PBa LINE L1 -5219 1644 1 * 2739 139 59 0 chr3 129940434 129940838 -88096320 - MSTC LTR MaLR 0 428 1 721 165 9 0 chr3 129941236 129941345 -88095813 + FLAM_A SINE Alu 12 121 -21 2934 166 34 6 chr3 129941350 129941844 -88095314 + MLT2B3 LTR ERVL 1 508 -46 530 29 15 0 chr3 129941844 129941912 -88095246 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 1890 103 70 0 chr3 129941927 129942200 -88094958 - MER4A LTR ERV1 -58 606 315 3739 157 19 3 chr3 129942314 129943407 -88093751 + L1PA16 LINE L1 4731 5839 -327 470 157 2 20 chr3 129943927 129944029 -88093129 - L1MC/D LINE L1 -418 5748 5662 407 211 11 11 chr3 129944333 129944423 -88092735 - MER20B DNA MER1_type 0 783 694 806 151 0 17 chr3 129944426 129944545 -88092613 + FRAM SINE Alu 43 159 -17 757 234 117 4 chr3 129944608 129944856 -88092302 - MER20B DNA MER1_type -166 617 342 1032 118 0 0 chr3 129944869 129945004 -88092154 + AluSq/x SINE Alu 1 135 -177 2406 86 7 0 chr3 129945004 129945306 -88091852 + AluSx SINE Alu 1 304 -8 1158 286 21 3 chr3 129945316 129945641 -88091517 - MER20B DNA MER1_type -452 331 1 184 352 23 55 chr3 129947451 129947579 -88089579 + L2 LINE L2 2724 2847 -467 586 263 46 11 chr3 129947632 129947807 -88089351 + MIR SINE MIR 54 234 -28 217 276 191 29 chr3 129948103 129948208 -88088950 + L2 LINE L2 3139 3260 -12 522 276 40 29 chr3 129948668 129948842 -88088316 + MIR3 SINE MIR 32 207 -1 282 306 112 84 chr3 129950068 129950424 -88086734 - L3b LINE CR1 -21 1562 1197 384 22 0 0 chr3 129951523 129951568 -88085590 + (CA)n Simple_repeat Simple_repeat 2 46 0 28 29 0 0 chr3 129952670 129952705 -88084453 + AT_rich Low_complexity Low_complexity 1 35 0 210 100 80 0 chr3 129953256 129953306 -88083852 + CT-rich Low_complexity Low_complexity 5 58 0 1557 158 0 70 chr3 129953733 129954031 -88083127 + AluJb SINE Alu 1 277 -35 3137 144 16 46 chr3 129955473 129956043 -88081115 + L1MB7 LINE L1 5625 6177 -7 687 121 121 26 chr3 129956057 129956173 -88080985 + AluJo/FLAM SINE Alu 1 127 -175 2600 40 0 3 chr3 129956173 129956472 -88080686 + AluY SINE Alu 1 298 -13 338 328 26 9 chr3 129957828 129957944 -88079214 - L2 LINE L2 -2 3311 3194 2286 96 3 7 chr3 129957991 129958292 -88078866 + AluSx SINE Alu 2 301 -11 280 307 79 0 chr3 129958293 129958420 -88078738 + MIR SINE MIR 99 235 -27 694 280 86 8 chr3 129958571 129958814 -88078344 + MIR SINE MIR 1 262 0 282 275 12 12 chr3 129958846 129958926 -88078232 - MIR3 SINE MIR -21 187 108 767 232 51 47 chr3 129959326 129959580 -88077578 - MER112 DNA MER1_type -1 255 1 759 218 47 34 chr3 129959643 129959877 -88077281 - L2 LINE L2 0 3313 3077 559 110 40 0 chr3 129959881 129959981 -88077177 + GA-rich Low_complexity Low_complexity 4 107 0 320 234 54 27 chr3 129959984 129960095 -88077063 - L1ME4a LINE L1 -66 6055 5942 302 231 51 13 chr3 129960388 129960498 -88076660 - MIR SINE MIR -64 144 27 312 255 128 21 chr3 129960897 129960991 -88076167 + MIR SINE MIR 21 124 -84 237 158 0 0 chr3 129961244 129961282 -88075876 + MIR3 SINE MIR 156 193 -15 565 312 51 9 chr3 129962090 129962305 -88074853 - MIR SINE MIR -37 225 2 1408 245 8 58 chr3 129962925 129963321 -88073837 + LTR16C LTR ERVL 115 490 -1 722 171 39 8 chr3 129963329 129963458 -88073700 + AluSq/x SINE Alu 1 133 -180 5182 139 22 28 chr3 129963579 129964483 -88072675 + L1MB1 LINE L1 5270 6168 0 241 242 140 83 chr3 129964484 129964641 -88072517 - L2 LINE L2 -808 2506 2341 580 259 20 58 chr3 129964804 129965097 -88072061 + L1MC5 LINE L1 7650 7931 -30 250 248 23 135 chr3 129965469 129965602 -88071556 - MIR SINE MIR -118 144 27 2161 121 0 0 chr3 129966044 129966342 -88070816 + AluSx SINE Alu 1 298 -14 45666 32 3 1 chr3 129966520 129972656 -88064502 + L1HS LINE L1 9 6155 0 207 69 0 0 chr3 129972656 129972685 -88064473 + (A)n Simple_repeat Simple_repeat 1 29 0 570 348 20 30 chr3 129972820 129973116 -88064042 + ERVL LTR ERVL 4107 4399 -1365 305 365 19 48 chr3 129973308 129973686 -88063472 + ERVL LTR ERVL 4621 4987 -498 207 139 0 0 chr3 129974257 129974273 -88062885 + (A)n Simple_repeat Simple_repeat 1 16 -27 27557 29 0 0 chr3 129974273 129978151 -88059007 + L1PA3 LINE L1 2273 6152 -3 207 139 0 0 chr3 129978151 129978177 -88058981 + (A)n Simple_repeat Simple_repeat 15 43 0 279 164 137 62 chr3 129978218 129978364 -88058794 + L1ME4a LINE L1 5963 6119 -2 2141 121 0 3 chr3 129978626 129978924 -88058234 + AluSg SINE Alu 1 297 -13 189 0 0 0 chr3 129980259 129980280 -88056878 + (TG)n Simple_repeat Simple_repeat 1 21 0 420 307 195 34 chr3 129980429 129981026 -88056132 - L2 LINE L2 0 3272 2590 321 280 166 11 chr3 129981496 129981671 -88055487 + L1M4 LINE L1 2507 2708 -3438 404 311 105 5 chr3 129981838 129982218 -88054940 + L1M4 LINE L1 2746 3163 -2983 * 410 250 40 0 chr3 129982216 129982316 -88054842 + L1MC1 LINE L1 4585 4688 -1458 * 6594 127 7 22 chr3 129982308 129982618 -88054540 + L1MC1 LINE L1 5299 5612 -721 2178 118 3 0 chr3 129982618 129982914 -88054244 - AluSq SINE Alu -16 297 1 6594 127 7 22 chr3 129982914 129983654 -88053504 + L1MC1 LINE L1 5612 6333 0 2028 281 78 56 chr3 129983631 129985177 -88051981 + L1M4 LINE L1 3181 4759 -1387 * 1048 151 164 20 chr3 129985742 129986046 -88051112 - MER69 DNA AcHobo -7 2519 2172 194 228 18 53 chr3 129987040 129987097 -88050061 + MER5A DNA MER1_type 48 102 -87 815 197 0 0 chr3 129987169 129987296 -88049862 - FLAM_A SINE Alu -6 127 1 1961 191 35 26 chr3 129987441 129987656 -88049502 + MER66B LTR ERV1 27 239 -247 2408 32 0 11 chr3 129987656 129987963 -88049195 - AluY SINE Alu 0 304 1 1961 191 35 26 chr3 129987963 129988202 -88048956 + MER66B LTR ERV1 239 486 0 535 263 67 49 chr3 129989348 129989554 -88047604 - MIR SINE MIR -43 219 12 718 287 26 17 chr3 129990205 129990435 -88046723 + MIR SINE MIR 21 252 -10 588 102 61 0 chr3 129990437 129990584 -88046574 + (TA)n Simple_repeat Simple_repeat 1 156 0 221 289 52 52 chr3 129990698 129990795 -88046363 + MIR SINE MIR 33 129 -133 534 316 53 18 chr3 129991030 129991258 -88045900 - MIR SINE MIR -26 236 1 270 262 241 7 chr3 129991359 129991500 -88045658 + MIR SINE MIR 20 193 -69 2003 152 0 3 chr3 129991549 129991852 -88045306 - AluJb SINE Alu -10 302 1 2627 248 139 19 chr3 129991875 129993086 -88044072 - L2 LINE L2 0 3313 1956 210 37 0 0 chr3 129993608 129993635 -88043523 + (T)n Simple_repeat Simple_repeat 1 27 0 196 29 29 29 chr3 129994319 129994353 -88042805 + (ATTAG)n Simple_repeat Simple_repeat 1 34 0 23 33 0 0 chr3 129995624 129995654 -88041504 + AT_rich Low_complexity Low_complexity 1 30 0 295 302 135 0 chr3 129996018 129996114 -88041044 - L2 LINE L2 -2 3311 3203 248 276 237 13 chr3 129996462 129996618 -88040540 + MIR SINE MIR 8 198 -64 419 281 71 20 chr3 129996795 129996991 -88040167 - LTR16C LTR ERVL -10 481 276 272 331 88 33 chr3 129997416 129997778 -88039380 - ERVL LTR ERVL -380 5384 5003 300 314 97 23 chr3 129997842 129998017 -88039141 - ERVL LTR ERVL -621 4864 4677 830 241 47 36 chr3 129998215 129998468 -88038690 - ERVL LTR ERVL -2421 3343 3088 773 209 51 32 chr3 129998469 129998627 -88038531 + FRAM SINE Alu 1 159 -17 1000 309 8 4 chr3 129998627 129998879 -88038279 - ERVL LTR ERVL -1937 3059 2807 1527 137 23 62 chr3 129999354 129999661 -88037497 + MER44D DNA MER2_type 40 604 -5 1246 148 39 0 chr3 129999807 130000010 -88037148 + MER2 DNA MER2_type 1 211 -134 24 67 0 0 chr3 130000014 130000059 -88037099 + AT_rich Low_complexity Low_complexity 1 45 0 621 256 131 40 chr3 130000150 130000343 -88036815 - L1ME4a LINE L1 -176 5945 5771 2330 98 0 0 chr3 130000343 130000639 -88036519 - AluSx SINE Alu -16 296 1 621 256 131 40 chr3 130000639 130000843 -88036315 - L1ME4a LINE L1 -350 5771 5512 510 275 127 0 chr3 130000852 130001041 -88036117 + MIR SINE MIR 22 234 -28 1793 158 7 18 chr3 130001184 130001511 -88035647 - AluJb SINE Alu 0 324 1 204 40 0 0 chr3 130001517 130001542 -88035616 + (TC)n Simple_repeat Simple_repeat 2 26 0 808 171 0 0 chr3 130001560 130001677 -88035481 - FLAM_C SINE Alu -15 118 2 415 319 81 0 chr3 130002143 130002328 -88034830 - L2 LINE L2 -480 2834 2635 4319 136 23 9 chr3 130002939 130003602 -88033556 - L1PA15 LINE L1 -13 6152 5481 2182 122 3 0 chr3 130004285 130004580 -88032578 + AluSx SINE Alu 1 296 -16 254 253 189 11 chr3 130004966 130005061 -88032097 - L2 LINE L2 -7 3265 3154 510 261 122 31 chr3 130005080 130005302 -88031856 - MIR SINE MIR -6 256 15 4563 123 2 3 chr3 130005417 130006053 -88031105 + MER41B LTR ERV1 1 635 0 410 250 87 0 chr3 130006080 130006184 -88030974 - MIR3 SINE MIR -3 205 93 437 244 173 27 chr3 130006528 130006753 -88030405 + MLT1L LTR MaLR 3 260 -355 264 294 83 0 chr3 130006935 130007044 -88030114 + MLT1J LTR MaLR 394 511 0 501 300 157 18 chr3 130007445 130007668 -88029490 - MIR SINE MIR -1 261 8 888 236 101 0 chr3 130007768 130007809 -88029349 - MIR SINE MIR 0 262 227 194 0 39 0 chr3 130007809 130007835 -88029323 + (CTATT)n Simple_repeat Simple_repeat 4 30 0 888 236 101 0 chr3 130007835 130008030 -88029128 - MIR SINE MIR -35 227 2 23 0 0 0 chr3 130008075 130008098 -88029060 + AT_rich Low_complexity Low_complexity 1 23 0 857 161 13 7 chr3 130008338 130008487 -88028671 - LTR9B LTR ERV1 0 644 495 2539 99 0 104 chr3 130008487 130008594 -88028564 - MER48 LTR ERV1 0 387 270 190 0 0 62 chr3 130008594 130008626 -88028532 + (TTTTA)n Simple_repeat Simple_repeat 4 33 0 5957 70 6 0 chr3 130008626 130009350 -88027808 - L1PA6 LINE L1 -13 6141 5414 2539 99 0 104 chr3 130009350 130009673 -88027485 - MER48 LTR ERV1 -115 272 1 3297 94 68 2 chr3 130009673 130010141 -88027017 - LTR9B LTR ERV1 -145 499 1 1765 139 65 31 chr3 130010236 130010560 -88026598 - LTR10A LTR ERV1 -61 548 214 315 241 126 0 chr3 130010582 130010669 -88026489 - LTR10A LTR ERV1 -511 98 1 11793 149 12 32 chr3 130010677 130011255 -88025903 - Harlequin LTR ERV1 -9 6640 6052 2423 64 0 13 chr3 130011255 130011553 -88025605 - AluY SINE Alu -17 294 1 11793 149 12 32 chr3 130011553 130014124 -88023034 - Harlequin LTR ERV1 -597 6052 1846 383 222 156 0 chr3 130014124 130014214 -88022944 + LTR8 LTR ERV1 150 253 -438 5615 75 20 116 chr3 130014216 130014878 -88022280 - LTR10A-int LTR ERV1 -5176 1720 1173 2270 110 0 0 chr3 130014878 130015231 -88021927 - AluY SINE Alu 0 311 1 5615 75 20 116 chr3 130015231 130015668 -88021490 - LTR10A-int LTR ERV1 -5723 1173 696 525 183 39 0 chr3 130015672 130015825 -88021333 + CT-rich Low_complexity Low_complexity 2 160 0 300 185 120 76 chr3 130015880 130015972 -88021186 - LTR10A-int LTR ERV1 -5579 1070 975 346 234 206 38 chr3 130016011 130016220 -88020938 - LTR10A-int LTR ERV1 -5936 713 470 964 225 57 39 chr3 130016514 130016794 -88020364 - LTR10A-int LTR ERV1 -6364 285 1 1922 175 107 22 chr3 130016803 130017264 -88019894 - LTR10A LTR ERV1 -61 548 1 875 167 0 8 chr3 130017383 130017515 -88019643 + FLAM_A SINE Alu 1 131 -2 604 286 29 11 chr3 130017595 130017770 -88019388 - MER5B DNA MER1_type 0 178 1 992 226 23 23 chr3 130017780 130017997 -88019161 - MER20 DNA MER1_type -1 218 2 1068 129 0 0 chr3 130018089 130018259 -88018899 + (TA)n Simple_repeat Simple_repeat 2 171 0 306 0 0 0 chr3 130018260 130018294 -88018864 + (GA)n Simple_repeat Simple_repeat 1 34 0 1087 240 147 8 chr3 130018789 130019164 -88017994 - LTR16C LTR ERVL -64 427 1 1810 159 10 7 chr3 130019257 130019553 -88017605 + AluJb SINE Alu 1 297 -15 425 306 68 41 chr3 130019618 130019837 -88017321 + L2 LINE L2 2442 2666 -648 195 298 125 10 chr3 130019891 130019995 -88017163 + L2 LINE L2 2966 3081 -191 1879 169 3 0 chr3 130020095 130020397 -88016761 - AluSx SINE Alu -6 306 4 405 0 0 0 chr3 130020406 130020451 -88016707 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 350 265 61 38 chr3 130020477 130020555 -88016603 + L2 LINE L2 3133 3217 -55 1174 144 11 0 chr3 130020555 130020742 -88016416 + MER53 DNA DNA 1 189 0 350 265 61 38 chr3 130020742 130020795 -88016363 + L2 LINE L2 3217 3267 -5 314 331 74 0 chr3 130021082 130021203 -88015955 + L2 LINE L2 3139 3268 -4 655 198 9 0 chr3 130021221 130021332 -88015826 + MER81 DNA DNA 1 112 -2 336 242 133 16 chr3 130022212 130022340 -88014818 + MIR3 SINE MIR 2 144 -64 337 251 91 24 chr3 130022468 130022593 -88014565 - MIR3 SINE MIR -52 156 37 7169 163 6 2 chr3 130023104 130024359 -88012799 + L1PA14 LINE L1 3906 5165 -981 270 0 0 0 chr3 130024359 130024389 -88012769 + (TA)n Simple_repeat Simple_repeat 1 30 0 399 41 0 0 chr3 130024398 130024447 -88012711 + (CA)n Simple_repeat Simple_repeat 2 50 0 2512 130 13 5 chr3 130024447 130024814 -88012344 + L1PA14 LINE L1 5789 6161 0 1703 120 8 12 chr3 130024814 130025071 -88012087 + L1MA2 LINE L1 6043 6299 -5 494 261 31 15 chr3 130026389 130026519 -88010639 - MIR SINE MIR -111 151 20 643 312 132 4 chr3 130027607 130027857 -88009301 - L3 LINE CR1 -1 1576 1295 2567 59 0 0 chr3 130028764 130029067 -88008091 + AluY SINE Alu 1 303 -8 189 276 40 53 chr3 130029480 130029556 -88007602 + MER5A DNA MER1_type 1 75 -114 1824 154 0 30 chr3 130029556 130029861 -88007297 + AluJb SINE Alu 1 296 -16 948 189 0 13 chr3 130029862 130030021 -88007137 + MER5A DNA MER1_type 32 188 -1 282 241 0 0 chr3 130030683 130030741 -88006417 - L2 LINE L2 0 3272 3215 543 282 36 71 chr3 130030751 130031003 -88006155 + MIR SINE MIR 12 254 -8 27 0 0 0 chr3 130031011 130031038 -88006120 + AT_rich Low_complexity Low_complexity 1 27 0 255 93 0 0 chr3 130031164 130031207 -88005951 + (TC)n Simple_repeat Simple_repeat 2 44 0 2602 167 31 0 chr3 130031428 130031841 -88005317 + MSTB LTR MaLR 1 426 0 2190 99 57 24 chr3 130032261 130032357 -88004801 - L1PA16 LINE L1 0 6166 6075 2804 113 3 3 chr3 130032357 130032721 -88004437 + THE1B LTR MaLR 1 364 0 2190 99 57 24 chr3 130032721 130032956 -88004202 - L1PA16 LINE L1 -91 6075 5824 308 312 28 9 chr3 130033593 130033702 -88003456 - L2 LINE L2 -195 3077 2967 324 67 0 0 chr3 130033702 130033735 -88003423 + (GGAA)n Simple_repeat Simple_repeat 3 38 -9 330 44 0 0 chr3 130033735 130033780 -88003378 + L1PA15 LINE L1 6121 6165 0 324 67 0 0 chr3 130033780 130033791 -88003367 + (GGAA)n Simple_repeat Simple_repeat 37 47 0 207 0 0 0 chr3 130033812 130033835 -88003323 + (GGGA)n Simple_repeat Simple_repeat 4 26 0 1148 257 98 45 chr3 130035869 130036053 -88001105 - LTR33 LTR ERVL -58 463 290 837 268 24 24 chr3 130036053 130036262 -88000896 + MER63A DNA MER1_type 1 209 -1 1148 257 98 45 chr3 130036262 130036517 -88000641 - LTR33 LTR ERVL -231 290 1 250 306 35 116 chr3 130036573 130036701 -88000457 - MER5A DNA MER1_type -2 187 79 2224 110 0 0 chr3 130036701 130036991 -88000167 - AluSx SINE Alu -22 290 1 250 306 35 116 chr3 130036991 130037061 -88000097 - MER5A DNA MER1_type -110 79 5 438 250 70 79 chr3 130037615 130037843 -87999315 + MIR SINE MIR 20 245 -17 204 188 42 0 chr3 130038290 130038338 -87998820 + GA-rich Low_complexity Low_complexity 3 52 0 22 35 0 0 chr3 130040086 130040115 -87997043 + AT_rich Low_complexity Low_complexity 1 29 0 686 298 114 36 chr3 130041546 130041986 -87995172 - L2 LINE L2 -13 3300 2827 245 306 16 0 chr3 130042037 130042099 -87995059 - MIR SINE MIR -169 93 31 766 83 0 58 chr3 130042318 130042438 -87994720 + MER4E LTR ERV1 654 766 0 5205 116 86 113 chr3 130042438 130042698 -87994460 + MER4E-int LTR ERV1 1 266 -6492 2341 96 0 6 chr3 130042698 130043010 -87994148 - AluSg SINE Alu 0 310 1 5205 116 86 113 chr3 130043010 130043840 -87993318 + MER4E-int LTR ERV1 266 1062 -5696 1160 97 12 12 chr3 130043840 130044005 -87993153 + MER4E LTR ERV1 586 750 -29 1436 198 124 30 chr3 130045447 130045881 -87991277 + Charlie4a DNA MER1_type 34 508 0 1216 191 29 0 chr3 130047368 130047578 -87989580 - MER20 DNA MER1_type -3 216 1 210 346 12 0 chr3 130047799 130047856 -87989302 + L3 LINE CR1 1493 1553 -24 617 197 197 14 chr3 130047856 130048003 -87989155 + MER5B DNA MER1_type 1 174 -4 210 346 12 0 chr3 130048003 130048026 -87989132 + L3 LINE CR1 1553 1574 -3 186 208 0 0 chr3 130048061 130048109 -87989049 + (CCAA)n Simple_repeat Simple_repeat 4 51 0 210 279 29 0 chr3 130048203 130048271 -87988887 + GA-rich Low_complexity Low_complexity 3 72 0 2181 130 0 0 chr3 130048358 130048659 -87988499 + AluSg SINE Alu 1 301 -9 1612 216 77 11 chr3 130049520 130049886 -87987272 + MLT1B LTR MaLR 1 390 0 224 224 103 17 chr3 130050000 130050058 -87987100 + L2 LINE L2 3251 3313 0 2103 106 0 0 chr3 130050142 130050417 -87986741 - AluSx SINE Alu -35 277 3 718 184 28 0 chr3 130050588 130050729 -87986429 - L1M4 LINE L1 -3538 2608 2464 246 164 55 18 chr3 130050958 130051013 -87986145 + L3 LINE CR1 1516 1572 -5 2877 116 2 88 chr3 130051177 130051643 -87985515 - MSTA LTR MaLR -2 426 1 10138 152 27 30 chr3 130051643 130053299 -87983859 - MSTA-int LTR MaLR 0 1651 1 1240 141 59 27 chr3 130053301 130053521 -87983637 - MSTA LTR MaLR -2 424 198 * 1963 130 72 6 chr3 130053509 130053840 -87983318 + MSTA LTR MaLR 76 428 0 2044 93 0 0 chr3 130054110 130054368 -87982790 + AluSq SINE Alu 1 258 -55 183 42 0 0 chr3 130054375 130054399 -87982759 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 314 233 0 0 chr3 130054503 130054563 -87982595 + L2 LINE L2 3248 3307 -6 350 206 0 82 chr3 130054563 130054660 -87982498 - MIR SINE MIR -72 190 102 282 258 140 0 chr3 130054946 130055039 -87982119 - L2 LINE L2 0 3313 3208 428 297 110 19 chr3 130055994 130056149 -87981009 + MER5A DNA MER1_type 7 175 -14 315 270 26 9 chr3 130056328 130056353 -87980805 + GA-rich Low_complexity Low_complexity 2 25 -93 2152 164 66 6 chr3 130056353 130056719 -87980439 + MLT1B LTR MaLR 3 390 0 315 270 26 9 chr3 130056719 130056808 -87980350 + GA-rich Low_complexity Low_complexity 25 118 0 1031 145 62 32 chr3 130056862 130057132 -87980026 - THE1B LTR MaLR 0 364 1 348 281 126 26 chr3 130057277 130057508 -87979650 + L1ME4a LINE L1 5695 5948 -173 1821 178 0 9 chr3 130057943 130058298 -87978860 - AluJb SINE Alu 0 352 1 271 235 47 24 chr3 130058355 130058440 -87978718 + L1ME4a LINE L1 5946 6032 -89 1891 103 3 97 chr3 130060040 130060375 -87976783 - AluSp SINE Alu 0 310 5 2028 155 0 7 chr3 130060610 130060919 -87976239 + AluJb SINE Alu 1 307 -5 40 37 0 0 chr3 130061341 130061395 -87975763 + AT_rich Low_complexity Low_complexity 1 54 0 300 246 105 89 chr3 130061507 130061698 -87975460 + MER91A DNA MER1_type 1 194 -2 188 159 0 23 chr3 130062088 130062132 -87975026 + GA-rich Low_complexity Low_complexity 1 43 0 473 236 199 6 chr3 130062239 130062400 -87974758 - MIR SINE MIR -24 238 47 357 24 0 0 chr3 130063015 130063057 -87974101 + (CA)n Simple_repeat Simple_repeat 1 42 0 2145 152 98 3 chr3 130063060 130063428 -87973730 + MER57A LTR ERV1 1 403 0 2473 114 47 14 chr3 130063474 130063835 -87973323 + THE1C LTR MaLR 3 375 0 395 261 92 67 chr3 130064796 130065034 -87972124 - L1MC/D LINE L1 -2269 5539 5296 5529 71 7 0 chr3 130065048 130065725 -87971433 + L1PA10 LINE L1 5484 6165 -3 266 287 287 0 chr3 130066240 130066369 -87970789 + MIR SINE MIR 76 241 -21 261 57 0 0 chr3 130066522 130066557 -87970601 + (TAGG)n Simple_repeat Simple_repeat 1 35 0 788 256 24 61 chr3 130067325 130067571 -87969587 - MIR SINE MIR -1 261 25 237 190 0 17 chr3 130068718 130068776 -87968382 - L1ME4a LINE L1 -8 6113 6057 212 354 0 15 chr3 130070101 130070166 -87966992 + L2 LINE L2 3129 3192 -80 9286 50 5 5 chr3 130070427 130071498 -87965660 + MER11C LTR ERVK 1 1071 0 2213 166 50 73 chr3 130073017 130073522 -87963636 + MLT1D LTR MaLR 5 497 -8 275 257 186 18 chr3 130073547 130073660 -87963498 + MER5A DNA MER1_type 20 151 -38 259 297 31 0 chr3 130073655 130073719 -87963439 - MIR SINE MIR -116 146 81 * 21 0 0 0 chr3 130073727 130073748 -87963410 + AT_rich Low_complexity Low_complexity 1 21 0 287 327 0 0 chr3 130074214 130074327 -87962831 + L2 LINE L2 2227 2339 -975 218 328 99 30 chr3 130074374 130074505 -87962653 + L2 LINE L2 2928 3067 -205 316 268 145 50 chr3 130074972 130075151 -87962007 + MIR SINE MIR 22 217 -45 204 298 18 0 chr3 130075546 130075603 -87961555 + MIR3 SINE MIR 144 201 -7 464 194 58 0 chr3 130076756 130076859 -87960299 + MLT1H LTR MaLR 1 109 -440 685 218 94 25 chr3 130076930 130077203 -87959955 + MLT1H LTR MaLR 241 549 0 27 0 0 0 chr3 130077988 130078015 -87959143 + AT_rich Low_complexity Low_complexity 1 27 0 1842 156 14 3 chr3 130078015 130078304 -87958854 - AluJo SINE Alu -20 292 1 828 204 6 6 chr3 130078309 130078466 -87958692 - AluJb SINE Alu -20 292 136 241 297 39 78 chr3 130078606 130078734 -87958424 - L2 LINE L2 -164 3108 2986 503 284 13 19 chr3 130078785 130078940 -87958218 + HAL1 LINE L1 1839 1992 -515 293 326 21 64 chr3 130079346 130079533 -87957625 + MER5A DNA MER1_type 7 185 -4 1119 210 123 58 chr3 130080175 130080650 -87956508 - MER39 LTR ERV1 0 683 1 818 192 20 20 chr3 130080866 130081017 -87956141 - AluJb SINE Alu -30 282 132 276 53 0 0 chr3 130081339 130081377 -87955781 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2104 108 21 0 chr3 130081379 130081658 -87955500 - AluSx SINE Alu -27 285 1 24 53 0 0 chr3 130081658 130081696 -87955462 + AT_rich Low_complexity Low_complexity 1 38 0 180 0 0 0 chr3 130082363 130082383 -87954775 + (CA)n Simple_repeat Simple_repeat 2 21 0 2089 165 14 8 chr3 130084892 130085255 -87951903 + MER47A DNA MER2_type 2 366 0 2306 87 0 0 chr3 130085766 130086065 -87951093 - AluY SINE Alu -12 299 1 27 49 0 0 chr3 130086372 130086413 -87950745 + AT_rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr3 130087674 130087702 -87949456 + AT_rich Low_complexity Low_complexity 1 28 0 337 311 82 7 chr3 130088946 130089081 -87948077 + MIR SINE MIR 58 202 -60 336 48 0 0 chr3 130090160 130090202 -87946956 + (CA)n Simple_repeat Simple_repeat 2 43 0 356 353 10 14 chr3 130090537 130090727 -87946431 + MER5A DNA MER1_type 1 178 0 196 267 0 0 chr3 130090727 130090768 -87946390 + MIR3 SINE MIR 153 193 -15 562 263 34 34 chr3 130090846 130091021 -87946137 + MIR SINE MIR 86 260 -2 1891 138 10 10 chr3 130091451 130091741 -87945417 + AluSg SINE Alu 1 290 -20 24 0 0 0 chr3 130092927 130092951 -87944207 + AT_rich Low_complexity Low_complexity 1 24 0 1622 207 76 53 chr3 130093857 130094476 -87942682 + L1MC5 LINE L1 7310 7942 -19 228 83 0 0 chr3 130094470 130094506 -87942652 - L1MB4 LINE L1 -4 6176 6141 * 1070 265 114 28 chr3 130094517 130095026 -87942132 - L1MC4a LINE L1 -1664 6144 5592 2121 124 0 0 chr3 130197312 130197611 -87839547 - AluSx SINE Alu -1 311 13 283 278 134 0 chr3 130199362 130199459 -87837699 - L2 LINE L2 -194 3078 2969 28 0 0 0 chr3 130199961 130199989 -87837169 + AT_rich Low_complexity Low_complexity 1 28 0 401 189 8 68 chr3 130200147 130200279 -87836879 + Charlie5 DNA MER1_type 2501 2624 0 553 239 84 19 chr3 130200790 130200945 -87836213 + L2 LINE L2 3148 3312 -1 2968 172 31 0 chr3 130201503 130202050 -87835108 - L1MB5 LINE L1 -10 6164 5601 235 288 82 0 chr3 130203467 130203540 -87833618 + MLT1K LTR MaLR 85 163 -425 712 250 16 31 chr3 130203618 130203810 -87833348 + MLT1K LTR MaLR 400 588 0 206 296 59 55 chr3 130203985 130204164 -87832994 - MIR SINE MIR -58 150 16 201 74 0 0 chr3 130204164 130204191 -87832967 + (TTTCC)n Simple_repeat Simple_repeat 4 30 0 794 173 0 0 chr3 130204195 130204328 -87832830 - FLAM_C SINE Alu 0 133 1 1910 219 90 17 chr3 130205369 130205903 -87831255 - MER90 LTR ERV1 0 575 3 233 268 0 24 chr3 130206649 130206731 -87830427 + L1MC5 LINE L1 7833 7912 -49 1369 266 63 75 chr3 130207916 130208533 -87828625 - MLT1L LTR MaLR 0 615 6 25 0 0 0 chr3 130209812 130209837 -87827321 + AT_rich Low_complexity Low_complexity 1 25 0 1166 234 64 13 chr3 130212220 130212596 -87824562 + L1M4 LINE L1 3768 4162 -1984 274 298 0 61 chr3 130212737 130212868 -87824290 - MIR SINE MIR -55 207 85 1137 50 0 0 chr3 130213067 130213208 -87823950 + L1PA3 LINE L1 6015 6155 0 629 301 79 78 chr3 130213341 130214328 -87822830 + L1MEd LINE L1 376 1363 -5009 519 297 102 50 chr3 130214336 130214619 -87822539 + L1MEd LINE L1 1317 1724 -4658 260 329 42 4 chr3 130214912 130215093 -87822065 + MIR SINE MIR 5 262 0 948 166 80 0 chr3 130215445 130215620 -87821538 - MER5A DNA MER1_type 0 189 1 477 296 202 11 chr3 130215686 130215953 -87821205 - L3 LINE CR1 -2 1575 1258 23 33 0 0 chr3 130216206 130216236 -87820922 + AT_rich Low_complexity Low_complexity 1 30 0 1993 124 0 27 chr3 130216262 130216561 -87820597 + AluJo SINE Alu 1 291 -21 186 43 0 0 chr3 130217042 130217065 -87820093 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 7119 51 20 0 chr3 130217065 130218685 -87818473 - L1PA5 LINE L1 -9 6145 4507 1212 91 0 18 chr3 130218785 130218950 -87818208 - AluSq SINE Alu -151 162 1 492 128 0 92 chr3 130219280 130219389 -87817769 - L1PA11 LINE L1 0 6174 6076 979 242 54 12 chr3 130219912 130220152 -87817006 - MIR SINE MIR -11 251 2 959 214 20 5 chr3 130220195 130220347 -87816811 - MER3 DNA MER1_type -5 204 47 1991 144 7 0 chr3 130220347 130220665 -87816493 - AluSx SINE Alu 0 312 1 959 214 20 5 chr3 130220665 130220713 -87816445 - MER3 DNA MER1_type -162 47 1 205 351 222 17 chr3 130220787 130221422 -87815736 - L2 LINE L2 -869 2445 1681 336 342 61 0 chr3 130221495 130221609 -87815549 - L2 LINE L2 0 3313 3193 2377 80 3 7 chr3 130221812 130222113 -87815045 + AluSg SINE Alu 1 300 -10 363 272 106 56 chr3 130222899 130223079 -87814079 - MER5A DNA MER1_type 0 189 1 405 326 55 69 chr3 130223140 130223358 -87813800 - L2 LINE L2 0 3272 3058 407 287 171 0 chr3 130223896 130224025 -87813133 - MIR3 SINE MIR -18 190 40 286 308 37 37 chr3 130224052 130224159 -87812999 - MER5A DNA MER1_type 0 189 83 3843 268 219 25 chr3 130224317 130225936 -87811222 - L2 LINE L2 -533 2781 849 1955 268 122 9 chr3 130227619 130228582 -87808576 - L1M4 LINE L1 -2342 3804 2734 1703 124 75 11 chr3 130228585 130228898 -87808260 - AluSx SINE Alu 0 330 1 712 161 31 8 chr3 130228904 130229034 -87808124 - AluJb SINE Alu -179 133 1 703 146 24 8 chr3 130229261 130229384 -87807774 + AluJb SINE Alu 1 125 -187 22 35 0 0 chr3 130229387 130229416 -87807742 + AT_rich Low_complexity Low_complexity 1 29 0 20808 34 2 1 chr3 130229422 130232733 -87804425 - L1PA4 LINE L1 -6 6149 2836 20906 57 9 1 chr3 130233347 130236163 -87800995 - L1PA4 LINE L1 -3307 2839 1 1197 286 35 16 chr3 130236177 130236727 -87800431 - L1M4 LINE L1 -3418 2728 2169 311 308 103 0 chr3 130236727 130236844 -87800314 - MER5A DNA MER1_type -60 129 1 274 323 123 49 chr3 130236966 130237291 -87799867 - L2 LINE L2 -2737 577 229 2250 120 0 0 chr3 130237608 130237917 -87799241 + AluSx SINE Alu 1 309 -3 2112 112 14 0 chr3 130239756 130240041 -87797117 - AluSx SINE Alu -23 289 1 22 0 0 0 chr3 130240183 130240205 -87796953 + AT_rich Low_complexity Low_complexity 1 22 0 675 285 90 0 chr3 130241717 130241917 -87795241 - MIR SINE MIR -29 233 16 1103 269 99 10 chr3 130242138 130242656 -87794502 - L2 LINE L2 0 3313 2734 562 319 56 19 chr3 130242664 130242880 -87794278 - MIR SINE MIR -32 230 7 1433 188 11 4 chr3 130243723 130244000 -87793158 - AluSq SINE Alu -3 310 32 256 86 0 0 chr3 130245271 130245306 -87791852 - U2 snRNA snRNA -153 35 1 503 211 10 39 chr3 130245561 130245665 -87791493 + FLAM_A SINE Alu 25 125 -17 427 200 105 11 chr3 130245745 130245840 -87791318 - MIR SINE MIR -3 259 156 288 98 39 0 chr3 130246780 130246831 -87790327 - L1MA6 LINE L1 -2 6298 6246 4406 127 64 58 chr3 130246848 130247329 -87789829 - L1PA15 LINE L1 -21 6144 5668 1895 101 63 17 chr3 130247329 130247485 -87789673 - AluSx SINE Alu -12 300 153 2424 103 0 0 chr3 130247485 130247795 -87789363 - AluSq SINE Alu -3 310 1 1895 101 63 17 chr3 130247795 130247925 -87789233 - AluSx SINE Alu -159 153 1 4406 127 64 58 chr3 130247925 130248930 -87788228 - L1PA15 LINE L1 -497 5668 4650 294 291 155 0 chr3 130250116 130250322 -87786836 - L1MC4a LINE L1 -1879 5929 5692 242 214 274 34 chr3 130250748 130250865 -87786293 + L2 LINE L2 2405 2549 -765 210 244 0 0 chr3 130250858 130250899 -87786259 - L2 LINE L2 -780 2534 2494 * 805 273 173 29 chr3 130250894 130251548 -87785610 + L2 LINE L2 2527 3313 0 591 315 61 11 chr3 130252507 130252786 -87784372 + L2 LINE L2 2879 3171 -142 2263 152 23 102 chr3 130253178 130253737 -87783421 - LTR40a LTR ERVL -4 515 1 308 323 112 25 chr3 130254621 130254782 -87782376 - MER5B DNA MER1_type -2 176 2 180 306 111 50 chr3 130255143 130255342 -87781816 - MIR SINE MIR -50 212 2 813 301 117 22 chr3 130256619 130257184 -87779974 - L2 LINE L2 -97 3216 2593 366 257 64 64 chr3 130258100 130258240 -87778918 - MIR3 SINE MIR -64 144 5 21819 70 6 24 chr3 130258411 130258813 -87778345 + L1PA6 LINE L1 2374 2782 -3372 2532 69 0 0 chr3 130258813 130259116 -87778042 + AluY SINE Alu 1 303 -8 21819 70 6 24 chr3 130259116 130262481 -87774677 + L1PA6 LINE L1 2782 6153 -1 2001 118 24 3 chr3 130262735 130263023 -87774135 - AluSx SINE Alu -18 294 1 2290 123 0 0 chr3 130263949 130264259 -87772899 - AluSx SINE Alu -2 310 1 5460 87 37 0 chr3 130264625 130265410 -87771748 + L1MA2 LINE L1 5485 6298 -6 23 0 0 0 chr3 130265415 130265438 -87771720 + AT_rich Low_complexity Low_complexity 1 23 0 199 222 89 0 chr3 130266035 130266080 -87771078 + L3b LINE CR1 1526 1574 -9 25 65 0 0 chr3 130266080 130266126 -87771032 + AT_rich Low_complexity Low_complexity 1 46 0 242 262 104 49 chr3 130266270 130266434 -87770724 + L1ME LINE L1 5594 5766 -355 13503 25 1 3 chr3 130268868 130271273 -87765885 + L1PA3 LINE L1 3794 6194 0 587 92 0 0 chr3 130271283 130271398 -87765760 + AluSp/q SINE Alu 207 321 0 325 267 84 23 chr3 130271436 130271567 -87765591 + MIR SINE MIR 78 216 -46 1736 185 3 10 chr3 130271665 130271967 -87765191 - AluJb SINE Alu -12 300 1 1518 128 0 0 chr3 130271977 130272188 -87764970 - AluSg/x SINE Alu -15 297 87 495 248 66 25 chr3 130272289 130272531 -87764627 - MER20B DNA MER1_type 0 783 532 661 266 12 35 chr3 130272861 130273030 -87764128 - MER5B DNA MER1_type -1 177 13 194 336 115 29 chr3 130273158 130273262 -87763896 + MIR SINE MIR 28 140 -122 1287 200 79 0 chr3 130273288 130273553 -87763605 + AluJo SINE Alu 10 295 -17 181 314 59 29 chr3 130273558 130273660 -87763498 + MIR SINE MIR 150 254 -8 357 335 121 16 chr3 130273843 130274091 -87763067 - L2 LINE L2 -792 2522 2249 759 227 58 14 chr3 130274210 130274417 -87762741 + Charlie8 DNA MER1_type 2 217 -2200 290 281 195 33 chr3 130274671 130274973 -87762185 + L2 LINE L2 2873 3223 -49 212 314 102 8 chr3 130275133 130275251 -87761907 - L2 LINE L2 -574 2740 2612 26 0 0 0 chr3 130276299 130276325 -87760833 + AT_rich Low_complexity Low_complexity 1 26 0 394 167 216 0 chr3 130276450 130276552 -87760606 - MIR SINE MIR -40 222 99 25 0 0 0 chr3 130276781 130276806 -87760352 + AT_rich Low_complexity Low_complexity 1 25 0 187 366 0 24 chr3 130277234 130277316 -87759842 - MIR3 SINE MIR -19 189 110 1975 135 13 13 chr3 130277919 130278223 -87758935 + AluJo SINE Alu 1 304 -8 320 274 57 57 chr3 130278897 130279072 -87758086 + L1ME LINE L1 5255 5429 -2379 2257 86 0 0 chr3 130279104 130279384 -87757774 - AluSg SINE Alu -30 280 1 292 287 101 34 chr3 130279504 130279772 -87757386 + L1ME LINE L1 5568 5853 -268 31808 66 18 1 chr3 130279857 130284250 -87752908 + L1P LINE L1 1 4468 -1678 707 258 48 19 chr3 130285117 130285261 -87751897 - MLT1B LTR MaLR -59 331 174 234 0 0 0 chr3 130285261 130285287 -87751871 + (TG)n Simple_repeat Simple_repeat 2 27 0 707 258 48 19 chr3 130285287 130285410 -87751748 - MLT1B LTR MaLR -216 174 56 696 194 42 30 chr3 130286012 130286177 -87750981 + FAM SINE Alu 4 170 -5 1601 185 33 62 chr3 130286335 130286789 -87750369 - MLT1D LTR MaLR -13 492 52 228 288 129 25 chr3 130286860 130287023 -87750135 - L1MC5 LINE L1 -48 7913 7734 329 318 8 23 chr3 130287606 130287735 -87749423 + MER5B DNA MER1_type 51 177 -1 301 239 34 45 chr3 130288104 130288192 -87748966 + L2 LINE L2 3227 3313 0 1069 225 39 45 chr3 130288849 130289160 -87747998 + MLT1I LTR MaLR 85 393 -16 497 246 168 43 chr3 130289357 130289613 -87747545 + MLT1K LTR MaLR 321 581 -7 221 167 0 139 chr3 130289675 130289747 -87747411 - MIR SINE MIR 0 262 201 773 126 67 0 chr3 130289822 130289941 -87747217 - FLAM_C SINE Alu -12 131 5 284 176 0 73 chr3 130291631 130291699 -87745459 + L2 LINE L2 3210 3272 0 540 226 96 57 chr3 130291925 130292134 -87745024 + MIR SINE MIR 6 219 -43 290 279 35 86 chr3 130292807 130293004 -87744154 + MER5A DNA MER1_type 3 189 0 245 148 0 19 chr3 130293160 130293214 -87743944 + (TTCC)n Simple_repeat Simple_repeat 1 53 0 560 257 13 46 chr3 130293774 130293926 -87743232 - MIR SINE MIR -114 148 2 580 240 16 0 chr3 130294169 130294298 -87742860 + MIR3 SINE MIR 30 160 -48 534 231 159 53 chr3 130294424 130294632 -87742526 - MIR SINE MIR 0 262 33 1814 292 83 20 chr3 130295602 130296351 -87740807 + L3 LINE CR1 673 1468 -109 2062 133 3 31 chr3 130296675 130296992 -87740166 - AluSx SINE Alu -4 308 1 27 0 0 0 chr3 130297115 130297142 -87740016 + AT_rich Low_complexity Low_complexity 1 27 0 2100 113 6 38 chr3 130297214 130297533 -87739625 + AluSg SINE Alu 1 309 -1 2998 203 63 2 chr3 130297734 130298350 -87738808 - MER21B LTR ERV1 -31 832 179 830 144 0 0 chr3 130298378 130298496 -87738662 - FLAM_C SINE Alu -15 118 1 431 253 258 5 chr3 130298582 130298776 -87738382 + MIR SINE MIR 12 254 -8 316 200 191 0 chr3 130298804 130298909 -87738249 - L1ME4a LINE L1 -40 6081 5957 22 0 0 0 chr3 130299597 130299619 -87737539 + AT_rich Low_complexity Low_complexity 1 22 0 200 257 9 38 chr3 130299772 130299877 -87737281 + GA-rich Low_complexity Low_complexity 3 104 0 260 260 0 0 chr3 130300431 130300508 -87736650 + GA-rich Low_complexity Low_complexity 1 77 0 677 97 10 0 chr3 130301541 130301644 -87735514 + (GAA)n Simple_repeat Simple_repeat 1 104 0 749 265 34 97 chr3 130303661 130304186 -87732972 - MLT1J LTR MaLR -19 492 1 2181 121 48 25 chr3 130304415 130304771 -87732387 + THE1B LTR MaLR 1 364 0 297 302 39 93 chr3 130305143 130305325 -87731833 + MIR3 SINE MIR 6 177 -31 526 221 52 0 chr3 130307054 130307190 -87729968 + MIR SINE MIR 114 256 -6 27 0 0 0 chr3 130307830 130307857 -87729301 + AT_rich Low_complexity Low_complexity 1 27 0 1962 137 0 24 chr3 130307857 130308150 -87729008 - AluJb SINE Alu -26 286 1 520 278 65 82 chr3 130308222 130308574 -87728584 + L2 LINE L2 2616 2961 -353 274 261 35 17 chr3 130308838 130308953 -87728205 + LTR16B LTR ERVL 189 305 -159 215 345 58 23 chr3 130309038 130309212 -87727946 + L2 LINE L2 3125 3304 -9 328 195 110 0 chr3 130309241 130309323 -87727835 - MIR SINE MIR -81 181 91 198 300 190 20 chr3 130309470 130309570 -87727588 + L2 LINE L2 3154 3270 -2 263 254 203 72 chr3 130309849 130309987 -87727171 - MIR3 SINE MIR -22 186 31 182 311 10 68 chr3 130310787 130310890 -87726268 - MIR SINE MIR -83 125 29 25 31 0 0 chr3 130311131 130311163 -87725995 + AT_rich Low_complexity Low_complexity 1 32 0 340 327 62 99 chr3 130311707 130311979 -87725179 - L2 LINE L2 -10 3262 3001 2179 49 3 14 chr3 130312209 130312494 -87724664 - L1PA8 LINE L1 -14 6158 5877 1131 201 47 0 chr3 130312782 130312996 -87724162 - MER58A DNA MER1_type 0 224 1 2156 125 7 0 chr3 130313175 130313470 -87723688 + AluSx SINE Alu 1 297 -15 1152 239 85 45 chr3 130313629 130314077 -87723081 + MLT1J LTR MaLR 1 466 -45 2223 118 3 0 chr3 130314121 130314426 -87722732 - AluSg SINE Alu -4 306 1 1494 282 94 8 chr3 130315844 130316335 -87720823 - L2 LINE L2 -1 3312 2781 540 220 153 28 chr3 130316386 130316563 -87720595 + MIR SINE MIR 18 216 -46 259 231 17 86 chr3 130316563 130316680 -87720478 + MER58B DNA MER1_type 1 109 -232 260 128 0 0 chr3 130316710 130316749 -87720409 - MER57A LTR ERV1 -64 339 301 996 217 0 26 chr3 130316754 130316984 -87720174 + MER58B DNA MER1_type 118 341 0 1255 263 106 26 chr3 130317135 130317631 -87719527 + L2 LINE L2 2781 3313 0 1626 197 3 20 chr3 130319062 130319357 -87717801 - AluJb SINE Alu -22 290 1 379 237 11 0 chr3 130320817 130320910 -87716248 - MIR SINE MIR 0 262 169 278 198 12 25 chr3 130321207 130321288 -87715870 + (TA)n Simple_repeat Simple_repeat 2 81 0 2050 84 30 0 chr3 130321598 130321860 -87715298 + AluSp SINE Alu 1 270 -43 224 59 29 0 chr3 130321861 130321895 -87715263 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 203 304 9 80 chr3 130323381 130323493 -87713665 - L2 LINE L2 -18 3295 3192 278 243 81 14 chr3 130323634 130323708 -87713450 + MIR SINE MIR 62 140 -68 617 259 43 83 chr3 130323761 130324062 -87713096 - L2 LINE L2 -16 3297 3009 2195 163 37 10 chr3 130324163 130324563 -87712595 - LTR39 LTR ERV1 0 783 373 1461 70 0 15 chr3 130324563 130324763 -87712395 + MER107 DNA MER1_type 1 197 0 2276 113 8 42 chr3 130324764 130325146 -87712012 - LTR39 LTR ERV1 -414 369 1 880 169 119 0 chr3 130325224 130325467 -87711691 + MER33 DNA MER1_type 7 278 -46 756 191 0 0 chr3 130325477 130325603 -87711555 - FLAM_C SINE Alu -17 126 1 276 308 23 23 chr3 130326426 130326556 -87710602 - L3b LINE CR1 -143 1440 1311 284 219 0 31 chr3 130326556 130326620 -87710538 + C-rich Low_complexity Low_complexity 4 65 0 771 134 29 12 chr3 130326620 130326791 -87710367 + CT-rich Low_complexity Low_complexity 2 175 0 192 224 94 35 chr3 130326794 130326879 -87710279 - L3b LINE CR1 -280 1303 1214 451 320 32 32 chr3 130327756 130327912 -87709246 + L2 LINE L2 3117 3272 0 223 263 25 0 chr3 130328119 130328199 -87708959 + (TATATG)n Simple_repeat Simple_repeat 1 82 0 1961 150 3 10 chr3 130329070 130329377 -87707781 - AluJb SINE Alu -7 305 1 636 189 141 5 chr3 130329410 130329571 -87707587 - MER5A DNA MER1_type 0 189 4 2890 142 39 4 chr3 130330782 130331316 -87705842 + L1MA8 LINE L1 5739 6291 0 275 323 101 16 chr3 130331357 130331546 -87705612 + L2 LINE L2 2932 3136 -177 1984 140 31 0 chr3 130331589 130331882 -87705276 - AluSx SINE Alu -10 302 1 1008 111 0 0 chr3 130331882 130332017 -87705141 - AluSq/x SINE Alu -178 135 1 248 174 0 0 chr3 130332138 130332184 -87704974 + L2 LINE L2 3265 3310 -3 1604 276 40 20 chr3 130333093 130333688 -87703470 + L1ME3A LINE L1 5544 6150 -20 29 0 0 0 chr3 130333701 130333730 -87703428 + AT_rich Low_complexity Low_complexity 1 29 0 227 183 32 32 chr3 130333885 130333978 -87703180 + GA-rich Low_complexity Low_complexity 2 94 0 2077 116 3 27 chr3 130334685 130334986 -87702172 - AluSg SINE Alu -16 294 1 232 250 217 22 chr3 130335169 130335261 -87701897 - MIR3 SINE MIR -28 180 71 21 0 0 0 chr3 130335618 130335639 -87701519 + AT_rich Low_complexity Low_complexity 1 21 0 405 220 46 77 chr3 130336014 130336206 -87700952 - MIR SINE MIR -66 142 3 2364 79 0 19 chr3 130336792 130337107 -87700051 - AluSc SINE Alu 0 309 1 237 250 135 10 chr3 130337576 130337672 -87699486 - MIR SINE MIR -87 175 68 1510 262 134 53 chr3 130337783 130339536 -87697622 - HAL1 LINE L1 0 2507 418 248 326 43 0 chr3 130339566 130339658 -87697500 - HAL1 LINE L1 -2154 353 258 231 240 93 40 chr3 130339796 130339871 -87697287 - HAL1 LINE L1 -2419 88 10 1018 289 116 5 chr3 130339874 130340279 -87696879 - LTR16A LTR ERVL 0 450 1 4112 182 71 15 chr3 130340307 130341433 -87695725 - L1MB8 LINE L1 -6 6172 5004 350 174 163 11 chr3 130341984 130342076 -87695082 - L1MB8 LINE L1 -1130 5016 4911 261 336 23 23 chr3 130342228 130342359 -87694799 - L3 LINE CR1 -925 652 522 * 316 353 15 30 chr3 130342354 130342487 -87694671 - L2 LINE L2 -8 3264 3134 287 347 159 15 chr3 130342505 130342776 -87694382 - L3 LINE CR1 -1057 520 211 228 172 0 138 chr3 130344797 130344855 -87692303 - L3 LINE CR1 -2 1575 1526 808 221 39 0 chr3 130345878 130346032 -87691126 - MER5B DNA MER1_type 0 178 19 313 343 27 89 chr3 130346396 130346688 -87690470 + L2 LINE L2 2995 3268 -4 234 276 182 69 chr3 130346848 130347167 -87689991 - L2 LINE L2 -362 2952 2598 1588 182 73 14 chr3 130347214 130347392 -87689766 + MLT1B LTR MaLR 1 167 -223 234 0 0 0 chr3 130347392 130347418 -87689740 + (CA)n Simple_repeat Simple_repeat 2 27 0 1588 182 73 14 chr3 130347418 130347607 -87689551 + MLT1B LTR MaLR 167 390 0 524 309 115 5 chr3 130349336 130349527 -87687631 + MIR SINE MIR 1 212 -50 234 0 0 0 chr3 130349882 130349908 -87687250 + (A)n Simple_repeat Simple_repeat 1 26 0 1833 248 39 31 chr3 130350904 130351421 -87685737 + LTR33 LTR ERVL 1 521 0 870 289 21 30 chr3 130351665 130351900 -87685258 + MIR SINE MIR 30 262 0 496 242 106 96 chr3 130352197 130352499 -87684659 + L2 LINE L2 3002 3306 -7 208 209 93 0 chr3 130352660 130352703 -87684455 + MIR SINE MIR 209 255 -7 954 186 64 6 chr3 130353458 130353630 -87683528 + MER5A DNA MER1_type 2 183 -6 371 263 88 35 chr3 130353647 130353761 -87683397 + MER117 DNA MER1_type 70 189 -8 387 369 7 7 chr3 130354709 130354850 -87682308 - MIR SINE MIR -102 160 20 7231 50 0 1 chr3 130355556 130357217 -87679941 - L1PA5 LINE L1 -1 6153 4480 38 75 0 0 chr3 130357309 130357389 -87679769 + AT_rich Low_complexity Low_complexity 1 80 0 419 113 14 0 chr3 130357732 130357803 -87679355 + (GA)n Simple_repeat Simple_repeat 1 72 0 2485 162 89 0 chr3 130358851 130359276 -87677882 - MLT1C LTR MaLR 0 467 5 2028 206 23 41 chr3 130359509 130360023 -87677135 + MLT1D LTR MaLR 1 505 0 709 267 68 32 chr3 130360201 130360422 -87676736 + MIR SINE MIR 34 262 0 1721 169 16 13 chr3 130360491 130360798 -87676360 - AluJb SINE Alu -4 308 1 1941 50 0 0 chr3 130361281 130361520 -87675638 - L1PA6 LINE L1 -252 5902 5664 1878 60 4 0 chr3 130361522 130361757 -87675401 + L1PA6 LINE L1 5908 6143 -11 355 313 116 42 chr3 130363407 130363926 -87673232 + L2 LINE L2 2485 3040 -232 692 218 79 50 chr3 130363946 130364287 -87672871 + MLT1J2 LTR MaLR 20 437 -13 363 348 32 32 chr3 130364321 130364479 -87672679 + L2 LINE L2 3108 3265 -7 185 196 18 0 chr3 130365077 130365133 -87672025 + GA-rich Low_complexity Low_complexity 2 58 0 506 315 59 57 chr3 130365462 130365900 -87671258 + MLT1L LTR MaLR 142 580 -35 464 211 0 11 chr3 130366177 130366267 -87670891 - MER4C LTR ERV1 0 465 377 1194 117 6 0 chr3 130366275 130366438 -87670720 + AluSp SINE Alu 122 285 -28 939 43 0 0 chr3 130366438 130366554 -87670604 + (CAAAG)n Simple_repeat Simple_repeat 2 117 0 387 222 37 9 chr3 130366587 130366695 -87670463 - MER4C LTR ERV1 -79 386 276 * 494 220 84 18 chr3 130366690 130366863 -87670295 - MER4C LTR ERV1 -167 532 165 * 2049 129 6 49 chr3 130366831 130367196 -87669962 - MER4A LTR ERV1 -315 349 1 4599 146 88 7 chr3 130367368 130368183 -87668975 - MER4D LTR ERV1 -22 881 1 340 252 120 48 chr3 130368425 130368593 -87668565 + MIR SINE MIR 5 182 -65 1394 62 0 0 chr3 130368615 130368791 -87668367 + L1PA5 LINE L1 5979 6154 0 838 158 72 0 chr3 130369507 130369646 -87667512 + FRAM SINE Alu 1 146 -30 792 244 49 78 chr3 130370054 130370399 -87666759 + Charlie8 DNA MER1_type 78 412 -2005 641 323 66 80 chr3 130371940 130372469 -87664689 - L2 LINE L2 0 3272 2737 641 233 0 0 chr3 130372493 130372613 -87664545 - FLAM_A SINE Alu -13 120 1 24 67 0 0 chr3 130373258 130373303 -87663855 + AT_rich Low_complexity Low_complexity 1 45 0 11092 126 8 11 chr3 130373847 130376397 -87660761 + L1PA10 LINE L1 3615 6166 -2 240 200 17 33 chr3 130377062 130377122 -87660036 + LTR67 LTR ERVL 478 536 -21 711 303 70 35 chr3 130377205 130377571 -87659587 + MLT1I LTR MaLR 21 450 0 2467 60 0 25 chr3 130377777 130378095 -87659063 + AluY SINE Alu 1 310 -1 22 0 0 0 chr3 130378122 130378144 -87659014 + AT_rich Low_complexity Low_complexity 1 22 0 443 322 171 24 chr3 130378716 130379008 -87658150 + L3 LINE CR1 429 763 -814 * 4358 253 109 70 chr3 130378997 130380115 -87657043 + L2 LINE L2 492 1564 -1750 360 0 0 0 chr3 130380115 130380155 -87657003 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 4358 253 109 70 chr3 130380155 130380590 -87656568 + L2 LINE L2 1564 1980 -1334 243 0 0 0 chr3 130380590 130380617 -87656541 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4358 253 109 70 chr3 130380617 130380866 -87656292 + L2 LINE L2 1980 2374 -940 1631 68 9 5 chr3 130380866 130381088 -87656070 + L1PA7 LINE L1 5932 6154 0 4358 253 109 70 chr3 130381088 130381162 -87655996 + L2 LINE L2 2374 2444 -870 516 301 55 10 chr3 130381336 130381535 -87655623 + L3 LINE CR1 1080 1287 -290 186 43 0 0 chr3 130381699 130381722 -87655436 + (TC)n Simple_repeat Simple_repeat 2 24 0 777 191 35 12 chr3 130382304 130382477 -87654681 - MER5B DNA MER1_type 0 178 2 242 341 30 45 chr3 130382537 130382669 -87654489 + L3 LINE CR1 1447 1576 -1 21 36 0 0 chr3 130383375 130383403 -87653755 + AT_rich Low_complexity Low_complexity 1 28 0 2407 119 5 22 chr3 130383684 130384054 -87653104 - THE1B LTR MaLR 0 364 1 1867 294 115 39 chr3 130384337 130385468 -87651690 - L2 LINE L2 -788 2526 1310 193 359 26 8 chr3 130385735 130385852 -87651306 - L2 LINE L2 -1205 2109 1991 278 272 11 54 chr3 130386055 130386147 -87651011 + L2 LINE L2 3225 3312 -1 352 263 0 71 chr3 130386230 130386329 -87650829 - L2 LINE L2 -1 3312 3221 27 62 0 0 chr3 130386701 130386749 -87650409 + AT_rich Low_complexity Low_complexity 1 48 0 848 238 79 0 chr3 130387556 130387783 -87649375 - MIR SINE MIR 0 262 18 21 0 0 0 chr3 130387913 130387934 -87649224 + AT_rich Low_complexity Low_complexity 1 21 0 199 315 11 56 chr3 130389073 130389162 -87647996 + MIR3 SINE MIR 124 208 0 571 256 22 17 chr3 130389480 130389710 -87647448 + L1ME4a LINE L1 5676 5906 -215 43194 47 2 1 chr3 130390021 130396171 -87640987 - L1PA4 LINE L1 0 6155 1 278 236 18 0 chr3 130396249 130396304 -87640854 - L3 LINE CR1 -9 1568 1513 621 274 22 58 chr3 130397719 130397894 -87639264 + MIR SINE MIR 28 195 -67 1996 115 14 0 chr3 130397894 130398180 -87638978 - AluSg SINE Alu -20 290 1 621 274 22 58 chr3 130398180 130398227 -87638931 + MIR SINE MIR 195 242 -20 1878 183 15 52 chr3 130398259 130398664 -87638494 + MLT1B LTR MaLR 1 390 0 659 251 94 43 chr3 130398762 130398997 -87638161 + MIR SINE MIR 16 262 0 280 273 0 15 chr3 130399771 130399837 -87637321 - L2 LINE L2 -3 3269 3205 22 0 0 0 chr3 130400562 130400584 -87636574 + AT_rich Low_complexity Low_complexity 1 22 0 263 340 52 0 chr3 130400781 130400878 -87636280 + MIR SINE MIR 30 131 -77 182 136 51 17 chr3 130400901 130400960 -87636198 + GA-rich Low_complexity Low_complexity 5 65 0 23 0 0 0 chr3 130401960 130401983 -87635175 + GC_rich Low_complexity Low_complexity 1 23 0 213 65 0 0 chr3 130402234 130402265 -87634893 + (TG)n Simple_repeat Simple_repeat 2 32 0 237 98 0 0 chr3 130402267 130402308 -87634850 + (GA)n Simple_repeat Simple_repeat 1 41 0 332 362 0 0 chr3 130402557 130402706 -87634452 + G-rich Low_complexity Low_complexity 1 149 0 401 335 12 29 chr3 130405178 130405369 -87631789 + MIR3 SINE MIR 5 138 -70 303 390 76 20 chr3 130405877 130406128 -87631030 + L2 LINE L2 2493 2757 -557 212 419 25 6 chr3 130406697 130406857 -87630301 + L2 LINE L2 2892 3054 -218 358 302 8 23 chr3 130407113 130407242 -87629916 + MER5B DNA MER1_type 51 177 -1 354 260 83 0 chr3 130407599 130407695 -87629463 + L2 LINE L2 3210 3313 0 2386 88 0 0 chr3 130410112 130410418 -87626740 - AluSq SINE Alu -6 307 2 21 0 0 0 chr3 130410490 130410511 -87626647 + AT_rich Low_complexity Low_complexity 1 21 0 760 170 42 30 chr3 130411370 130411535 -87625623 + FAM SINE Alu 4 170 -5 1829 182 34 66 chr3 130411682 130412154 -87625004 - MLT1D LTR MaLR -2 503 47 596 236 97 81 chr3 130412193 130412575 -87624583 - L1MC5 LINE L1 -29 7932 7545 21 0 0 0 chr3 130412993 130413014 -87624144 + AT_rich Low_complexity Low_complexity 1 21 0 8129 191 42 10 chr3 130414185 130417744 -87619414 - L1MA4 LINE L1 -11 7708 3974 2287 53 3 3 chr3 130418514 130418827 -87618331 - AluY SINE Alu 0 313 1 5041 209 39 22 chr3 130419077 130420743 -87616415 - L1MA4 LINE L1 -3598 3967 2265 2098 142 0 0 chr3 130420743 130421053 -87616105 - AluY SINE Alu -1 310 1 5041 209 39 22 chr3 130421053 130421093 -87616065 - L1MA4 LINE L1 -5300 2265 2227 3269 174 16 2 chr3 130421091 130421659 -87615499 - L1MA4 LINE L1 -4752 1813 1238 * 1029 206 73 73 chr3 130421890 130422082 -87615076 - L1ME2 LINE L1 -11 6153 5962 2120 131 0 0 chr3 130422082 130422379 -87614779 - AluSg SINE Alu -13 297 1 1029 206 73 73 chr3 130422379 130422458 -87614700 - L1ME2 LINE L1 -202 5962 5884 342 0 0 0 chr3 130422458 130422496 -87614662 + (TG)n Simple_repeat Simple_repeat 2 39 0 1029 206 73 73 chr3 130422496 130422577 -87614581 - L1ME2 LINE L1 -279 5885 5800 1584 213 40 39 chr3 130422696 130423192 -87613966 - MER89 LTR ERV1 0 559 3 289 311 109 30 chr3 130423222 130423489 -87613669 - L1ME4a LINE L1 -215 5906 5619 257 284 74 28 chr3 130423593 130423769 -87613389 - L1ME4a LINE L1 -2337 5471 5288 465 167 0 0 chr3 130423997 130424075 -87613083 + MLT1B LTR MaLR 313 390 0 365 319 48 57 chr3 130424181 130424429 -87612729 - HAL1b LINE L1 -689 659 414 1642 256 110 36 chr3 130424861 130425388 -87611770 - MER90 LTR ERV1 -5 570 5 321 302 0 0 chr3 130425560 130425646 -87611512 + MER89 LTR ERV1 165 250 -309 2053 157 9 9 chr3 130425704 130426049 -87611109 - MER7A DNA MER2_type 0 346 4 5270 28 14 0 chr3 130426395 130427028 -87610130 + L1PA4 LINE L1 5514 6155 0 245 279 0 0 chr3 130427882 130427950 -87609208 + T-rich Low_complexity Low_complexity 1 68 0 3520 190 77 16 chr3 130428031 130430426 -87606732 - L1MCb LINE L1 -3210 3216 594 1250 81 9 8 chr3 130430437 130430659 -87606499 - AluY SINE Alu -19 292 1 2711 179 14 108 chr3 130430662 130431531 -87605627 - L1MCa LINE L1 -5319 759 29 242 292 111 0 chr3 130431829 130431973 -87605185 - L1ME4a LINE L1 -2 6119 5960 21 0 0 0 chr3 130432075 130432096 -87605062 + AT_rich Low_complexity Low_complexity 1 21 0 493 291 45 6 chr3 130432154 130432333 -87604825 - L1ME4a LINE L1 -382 5739 5554 407 249 69 104 chr3 130432557 130432594 -87604564 + MIR SINE MIR 72 109 -153 1772 160 3 10 chr3 130432594 130432901 -87604257 - AluJo SINE Alu -7 305 1 407 249 69 104 chr3 130432901 130433036 -87604122 + MIR SINE MIR 109 238 -24 491 240 133 7 chr3 130433649 130433799 -87603359 - MIR3 SINE MIR -6 202 34 22 70 0 0 chr3 130435416 130435459 -87601699 + AT_rich Low_complexity Low_complexity 1 43 0 389 369 7 7 chr3 130436319 130436460 -87600698 - MIR SINE MIR -102 160 20 20642 41 1 1 chr3 130437166 130440476 -87596682 - L1PA5 LINE L1 -1 6153 2829 2125 136 0 0 chr3 130440708 130441009 -87596149 + AluSx SINE Alu 1 301 -11 1058 116 6 29 chr3 130441169 130441342 -87595816 - MER39 LTR ERV1 0 707 539 1256 215 14 11 chr3 130441401 130441680 -87595478 - MER39 LTR ERV1 -164 543 264 1133 174 94 26 chr3 130442531 130442796 -87594362 - MER2 DNA MER2_type -5 340 58 810 151 14 22 chr3 130443600 130443739 -87593419 + AluSg/x SINE Alu 153 290 -20 665 273 75 12 chr3 130444110 130444429 -87592729 + MER58B DNA MER1_type 3 341 0 308 333 45 18 chr3 130444629 130444740 -87592418 + L2 LINE L2 3139 3252 -20 333 300 132 7 chr3 130446393 130446680 -87590478 - L1M4 LINE L1 -1968 4178 3856 247 330 9 9 chr3 130447194 130447306 -87589852 - L1M4 LINE L1 -2323 3823 3712 224 195 0 0 chr3 130447543 130447584 -87589574 + CT-rich Low_complexity Low_complexity 2 42 0 428 187 73 40 chr3 130447600 130447750 -87589408 + HAL1 LINE L1 1932 2086 -421 600 208 128 57 chr3 130447788 130448086 -87589072 + HAL1 LINE L1 2189 2507 0 23 0 0 0 chr3 130448984 130449007 -87588151 + AT_rich Low_complexity Low_complexity 1 23 0 300 321 55 66 chr3 130449296 130449660 -87587498 - MER65A LTR ERV1 -85 360 1 987 314 113 17 chr3 130449826 130450285 -87586873 - MLT1J LTR MaLR -8 503 1 253 360 34 0 chr3 130450449 130450538 -87586620 + LTR33A LTR ERVL 71 162 -361 4429 174 33 26 chr3 130451132 130452086 -87585072 - L1MB8 LINE L1 -15 6163 5210 6038 137 6 15 chr3 130452086 130453550 -87583608 - L1PB2 LINE L1 -2 6149 4696 2162 209 9 46 chr3 130453558 130453673 -87583485 - L1MB8 LINE L1 -957 5189 5071 308 153 69 0 chr3 130453673 130453745 -87583413 + L1MA7 LINE L1 6210 6286 -5 2162 209 9 46 chr3 130453745 130454213 -87582945 - L1MB8 LINE L1 -1075 5071 4628 778 41 0 0 chr3 130454213 130454310 -87582848 - L1PA2 LINE L1 -5 6150 6054 7628 22 1 1 chr3 130454310 130455880 -87581278 + L1PA3 LINE L1 4473 6043 -112 853 219 86 20 chr3 130455878 130456180 -87580978 - L1MB8 LINE L1 -1509 4637 4316 * 1693 175 0 4 chr3 130456504 130456773 -87580385 - AluJb SINE Alu -44 268 1 1817 176 0 29 chr3 130456999 130457311 -87579847 - AluJo SINE Alu -9 303 1 998 251 50 16 chr3 130457312 130457635 -87579523 - L1MB8 LINE L1 -1818 4328 3995 1784 237 56 35 chr3 130457886 130458587 -87578571 - L1ME2 LINE L1 0 6170 5406 1097 220 19 28 chr3 130458871 130459235 -87577923 - L1ME2 LINE L1 -2812 3334 2974 3252 166 35 13 chr3 130459240 130459874 -87577284 - L1MD1 LINE L1 0 6242 5595 3253 182 10 2 chr3 130459877 130460470 -87576688 - L1MB3 LINE L1 -52 6131 5534 1878 194 35 11 chr3 130460473 130460927 -87576231 - L1MB3 LINE L1 -964 5182 4718 * 2704 194 16 31 chr3 130460924 130461318 -87575840 - L1MB8 LINE L1 -2211 3935 3554 19961 43 0 4 chr3 130461318 130464593 -87572565 + L1PA5 LINE L1 2875 6151 -3 2704 194 16 31 chr3 130464593 130464883 -87572275 - L1MB8 LINE L1 -2592 3554 3261 472 272 79 0 chr3 130465011 130465213 -87571945 + L1 LINE L1 2969 3186 -2960 43451 44 1 1 chr3 130465222 130471360 -87565798 + L1PA3 LINE L1 9 6144 -11 6012 226 13 15 chr3 130471341 130472920 -87564238 + L1 LINE L1 3153 4729 -1417 * 377 136 41 82 chr3 130472901 130473029 -87564129 + L1P4 LINE L1 5677 5792 -382 * 301 276 0 61 chr3 130473111 130473209 -87563949 - L1MC4 LINE L1 -1339 6703 6612 228 274 0 0 chr3 130473216 130473267 -87563891 + (TG)n Simple_repeat Simple_repeat 1 51 0 1851 127 25 102 chr3 130473267 130473670 -87563488 + L1PB4 LINE L1 5777 6148 -8 4342 229 61 32 chr3 130474137 130475145 -87562013 + L1M2c LINE L1 2571 3548 -4017 5492 108 36 14 chr3 130475145 130476331 -87560827 + L1PB2 LINE L1 4929 6144 -7 4342 229 61 32 chr3 130476331 130477416 -87559742 + L1M2c LINE L1 3548 4687 -2878 36806 96 6 9 chr3 130477484 130483631 -87553527 + L1PA6 LINE L1 13 6147 -7 28 91 0 0 chr3 130483780 130483857 -87553301 + AT_rich Low_complexity Low_complexity 1 77 0 1006 253 65 6 chr3 130483892 130484245 -87552913 + L1ME3A LINE L1 5757 6135 -27 7600 109 29 5 chr3 130484432 130485524 -87551634 + L1PBa LINE L1 1285 2409 -4454 1860 196 20 43 chr3 130485524 130485984 -87551174 - LTR2 LTR ERV1 0 449 1 7600 109 29 5 chr3 130485984 130486075 -87551083 + L1PBa LINE L1 2409 2496 -4367 903 228 58 17 chr3 130486248 130486750 -87550408 - L1M4 LINE L1 -3692 3873 3346 1385 224 38 18 chr3 130486766 130487209 -87549949 - L1M4 LINE L1 -4521 2975 2524 251 174 14 29 chr3 130487455 130487524 -87549634 + (CAATT)n Simple_repeat Simple_repeat 3 70 0 3057 12 0 0 chr3 130489726 130490134 -87547024 - L1P1 LINE L1 -720 5435 5028 796 289 162 39 chr3 130490167 130490838 -87546320 + L2 LINE L2 1890 2643 -671 1733 155 105 3 chr3 130490838 130491161 -87545997 + MLT2D LTR ERVL 1 356 -58 213 94 0 0 chr3 130491207 130491239 -87545919 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 258 136 0 0 chr3 130491258 130491302 -87545856 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 195 325 96 66 chr3 130491316 130491513 -87545645 + L2 LINE L2 2645 2847 -467 348 275 83 17 chr3 130491586 130491706 -87545452 + LTR67 LTR ERVL 372 499 -58 211 333 17 51 chr3 130491764 130491881 -87545277 + MER5A DNA MER1_type 7 119 -70 315 242 71 10 chr3 130491881 130491910 -87545248 + LTR67 LTR ERVL 451 477 -80 7071 89 4 1 chr3 130491910 130493671 -87543487 - L1PA7 LINE L1 -14 6140 4378 315 242 71 10 chr3 130493671 130493740 -87543418 + LTR67 LTR ERVL 477 555 -2 1753 197 28 79 chr3 130494731 130495188 -87541970 + MLT1D LTR MaLR 1 434 -71 297 169 0 0 chr3 130495435 130495494 -87541664 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 586 207 7 22 chr3 130495525 130495660 -87541498 + MER34 LTR ERV1 1 133 -409 475 44 29 0 chr3 130495734 130495802 -87541356 - L1PA4 LINE L1 -4 6151 6082 448 323 123 32 chr3 130496042 130496541 -87540617 - L2 LINE L2 -46 3267 2700 400 192 52 6 chr3 130496542 130496714 -87540444 + (TA)n Simple_repeat Simple_repeat 1 180 0 26 64 0 0 chr3 130496714 130496761 -87540397 + AT_rich Low_complexity Low_complexity 1 47 0 316 260 85 105 chr3 130496947 130497147 -87540011 - MER102b DNA MER1_type 0 341 146 13328 168 76 6 chr3 130498247 130498533 -87538625 - L1PBa LINE L1 -751 6111 5846 2238 75 0 11 chr3 130498533 130498812 -87538346 + AluY SINE Alu 1 276 -35 13328 168 76 6 chr3 130498812 130503658 -87533500 - L1PBa LINE L1 -1016 5846 633 1280 132 0 0 chr3 130503658 130503855 -87533303 - L1PBa LINE L1 -6664 199 3 6191 230 39 23 chr3 130503862 130504485 -87532673 - L1M4 LINE L1 -990 5156 4544 234 0 0 0 chr3 130504485 130504511 -87532647 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 1456 209 0 7 chr3 130504511 130504788 -87532370 - AluJo SINE Alu -29 283 9 6191 230 39 23 chr3 130504788 130505889 -87531269 - L1M4 LINE L1 -1601 4545 3404 3117 244 55 46 chr3 130505889 130507297 -87529861 - L1MCb LINE L1 -4851 1194 3 993 226 70 52 chr3 130507405 130507848 -87529310 - L1M4 LINE L1 -1497 4649 4199 839 239 109 25 chr3 130507847 130508270 -87528888 + L1ME2 LINE L1 5494 5998 -166 * 5376 156 38 11 chr3 130508289 130509901 -87527257 + L1PA16 LINE L1 4488 6148 -18 3695 197 22 38 chr3 130509899 130510801 -87526357 + L1MB8 LINE L1 5290 6177 -1 * 2226 182 23 23 chr3 130511611 130512044 -87525114 + Tigger2a DNA MER2_type 1 433 -1 853 309 18 4 chr3 130512148 130512423 -87524735 + HERVL LTR ERVL 1668 1945 -3051 406 327 36 35 chr3 130512448 130512708 -87524450 + HERVL LTR ERVL 2385 2605 -2880 272 343 19 0 chr3 130512675 130512783 -87524375 + HERVL LTR ERVL 3268 3377 -2387 * 1931 338 57 31 chr3 130513054 130514352 -87522806 + HERVL LTR ERVL 3407 5026 -628 392 344 21 43 chr3 130514755 130514941 -87522217 + LTR16C LTR ERVL 1 182 -309 931 262 51 23 chr3 130515022 130515453 -87521705 + L1M4 LINE L1 3464 3906 -2240 30525 41 3 0 chr3 130515467 130519936 -87517222 + L1PA4 LINE L1 1578 6056 -99 2631 176 48 21 chr3 130519936 130520702 -87516456 + L1MA8 LINE L1 5035 5827 -464 1948 161 20 25 chr3 130520719 130521111 -87516047 + L1PA16 LINE L1 5766 6155 -11 299 236 85 19 chr3 130521307 130521413 -87515745 + L1M4 LINE L1 4552 4664 -1482 19701 121 21 34 chr3 130521415 130525642 -87511516 + L1P3 LINE L1 2 4232 -2229 4894 154 39 7 chr3 130525755 130526619 -87510539 + L1P3 LINE L1 686 1577 -4884 1605 142 0 15 chr3 130526616 130526877 -87510281 + L1PA4 LINE L1 1 257 -5889 * 35205 42 4 7 chr3 130526877 130532098 -87505060 + L1PA4 LINE L1 945 6150 -5 227 282 0 0 chr3 130532129 130532200 -87504958 - L1MDa LINE L1 -3834 2706 2636 8979 169 22 15 chr3 130532284 130535167 -87501991 - L1MA4A LINE L1 0 6954 4039 3028 231 51 15 chr3 130535173 130535264 -87501894 - L1MDa LINE L1 -3966 2574 2488 1743 211 0 0 chr3 130535264 130535576 -87501582 - AluJb SINE Alu 0 312 1 3028 231 51 15 chr3 130535576 130536442 -87500716 - L1MDa LINE L1 -4052 2488 1582 2000 196 42 16 chr3 130536469 130536917 -87500241 - L1MA9 LINE L1 -30 6282 5823 5125 135 13 13 chr3 130536921 130537892 -87499266 - L1PA15 LINE L1 0 6165 5165 3834 228 5 13 chr3 130537887 130538510 -87498648 + L1PA16 LINE L1 3671 4285 -1861 2125 82 0 0 chr3 130538510 130538790 -87498368 - L1PA7 LINE L1 -1 6153 5874 3834 228 5 13 chr3 130538790 130539062 -87498096 + L1PA16 LINE L1 4285 4558 -1588 407 259 36 0 chr3 130539059 130539198 -87497960 - L1PA13 LINE L1 -3213 3584 3441 * 1803 148 0 0 chr3 130539199 130539456 -87497702 - AluSx SINE Alu -32 280 24 4470 242 27 38 chr3 130539456 130542010 -87495148 - L1PA13 LINE L1 -3753 3044 1 2676 174 48 21 chr3 130542014 130542780 -87494378 - L1MA8 LINE L1 -464 5827 5035 11083 33 5 12 chr3 130542780 130544837 -87492321 - L1PA4 LINE L1 -99 6056 4017 679 276 11 37 chr3 130544831 130545099 -87492059 + L1MC/D LINE L1 2329 2589 -3557 * 3509 213 45 13 chr3 130545092 130546001 -87491157 + L1PA16 LINE L1 5209 6153 -13 788 236 89 30 chr3 130546006 130546931 -87490227 + L1MC/D LINE L1 2585 3711 -2435 * 1327 231 53 14 chr3 130546930 130547501 -87489657 + L1MC/D LINE L1 5009 5608 -751 * 2431 176 72 4 chr3 130547498 130548015 -87489143 - L1M4c LINE L1 -4907 1477 926 * 4168 210 45 142 chr3 130548006 130550215 -87486943 + L1 LINE L1 2322 4316 -1830 616 333 59 57 chr3 130550230 130550705 -87486453 + L1M3b LINE L1 9 484 -5797 4077 228 54 139 chr3 130550726 130554970 -87482188 + L1M2 LINE L1 1 3888 -2960 43251 44 1 2 chr3 130554979 130561131 -87476027 + L1PA2 LINE L1 9 6155 0 180 0 0 0 chr3 130561139 130561159 -87475999 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 23 78 0 0 chr3 130561277 130561328 -87475830 + AT_rich Low_complexity Low_complexity 1 51 0 242 313 0 0 chr3 130561668 130561680 -87475478 - L1MA4A LINE L1 0 6303 6292 5083 178 44 31 chr3 130561680 130562068 -87475090 - L1PB4 LINE L1 0 6156 5775 470 83 14 0 chr3 130562068 130562140 -87475018 + (TCTA)n Simple_repeat Simple_repeat 1 73 0 5083 178 44 31 chr3 130562140 130563597 -87473561 - L1PB4 LINE L1 -381 5775 4268 1986 141 3 0 chr3 130563597 130563887 -87473271 + AluSq SINE Alu 1 291 -22 5083 178 44 31 chr3 130563887 130564321 -87472837 - L1PB4 LINE L1 -1888 4268 3841 575 0 0 0 chr3 130564327 130564398 -87472760 - L1HS LINE L1 0 6155 6085 347 202 36 0 chr3 130564380 130564464 -87472694 - L1M4 LINE L1 -2284 3931 3845 * 21 0 0 0 chr3 130564464 130564485 -87472673 + AT_rich Low_complexity Low_complexity 1 21 0 1504 212 0 20 chr3 130564485 130564778 -87472380 - AluJo SINE Alu -23 289 3 1226 201 11 47 chr3 130564781 130565060 -87472098 - AluJo SINE Alu 0 312 44 3645 246 67 30 chr3 130565076 130567254 -87469904 - L1PBa LINE L1 -2367 3848 1624 434 270 34 11 chr3 130567275 130567453 -87469705 - L1MEc LINE L1 -5105 1291 1110 2538 268 62 37 chr3 130567473 130567493 -87469665 - L1MEc LINE L1 -5357 1039 1021 261 83 0 0 chr3 130567493 130567529 -87469629 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 2538 268 62 37 chr3 130567529 130568484 -87468674 - L1MEc LINE L1 -5375 1021 40 241 308 0 0 chr3 130568593 130568658 -87468500 + CT-rich Low_complexity Low_complexity 3 67 0 21 57 0 0 chr3 130569553 130569588 -87467570 + AT_rich Low_complexity Low_complexity 1 35 0 2362 104 0 0 chr3 130570972 130571279 -87465879 + AluSc SINE Alu 1 307 -2 12275 223 11 4 chr3 130573270 130576223 -87460935 - L1P3 LINE L1 -1867 5717 2736 1111 104 0 0 chr3 130576228 130576372 -87460786 - AluSg/x SINE Alu -15 295 152 2782 312 42 60 chr3 130576372 130577764 -87459394 - L1P3 LINE L1 -6204 1377 12 16473 38 1 0 chr3 130577947 130580002 -87457156 + L1P LINE L1 1809 3865 -2281 605 278 8 48 chr3 130580133 130580486 -87456672 + L1M4 LINE L1 3441 3779 -2367 1226 201 11 47 chr3 130580502 130580781 -87456377 + AluJo SINE Alu 44 312 0 1519 208 0 20 chr3 130580784 130581077 -87456081 + AluJo SINE Alu 3 289 -23 21 0 0 0 chr3 130581077 130581098 -87456060 + AT_rich Low_complexity Low_complexity 1 21 0 363 202 36 0 chr3 130581098 130581182 -87455976 + L1M4 LINE L1 3776 3862 -2284 * 575 0 0 0 chr3 130581164 130581235 -87455923 + L1HS LINE L1 6085 6155 0 5083 177 43 31 chr3 130581239 130581673 -87455485 + L1PB4 LINE L1 3841 4268 -2035 2040 134 3 0 chr3 130581673 130581963 -87455195 - AluSq SINE Alu -22 291 1 5083 177 43 31 chr3 130581963 130583420 -87453738 + L1PB4 LINE L1 4268 5909 -394 470 83 14 0 chr3 130583420 130583492 -87453666 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 5083 177 43 31 chr3 130583492 130583892 -87453266 + L1PB4 LINE L1 5909 6303 0 23 78 0 0 chr3 130584232 130584283 -87452875 + AT_rich Low_complexity Low_complexity 1 51 0 180 0 0 0 chr3 130584401 130584421 -87452737 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 11141 117 6 2 chr3 130584430 130586921 -87450237 - L1PA2 LINE L1 0 6155 3657 915 160 58 0 chr3 130586921 130587127 -87450031 - L1 LINE L1 -2738 3408 3191 * 4589 158 3 5 chr3 130587123 130587899 -87449259 - L1PA15 LINE L1 0 6165 5392 593 304 63 51 chr3 130587990 130588458 -87448700 - L1M1 LINE L1 -5769 1796 407 1670 175 33 36 chr3 130588578 130588938 -87448220 + MER1A DNA MER1_type 1 359 -170 289 243 108 0 chr3 130589133 130589281 -87447877 + L1M4 LINE L1 3023 3186 -2960 37897 52 4 5 chr3 130589290 130594327 -87442831 + L1P LINE L1 9 5039 -1107 303 227 45 15 chr3 130594427 130594493 -87442665 - L1ME3A LINE L1 -304 5866 5799 27 29 0 0 chr3 130594578 130594612 -87442546 + AT_rich Low_complexity Low_complexity 1 34 0 1535 160 20 68 chr3 130595483 130595593 -87441565 + AluJo SINE Alu 3 117 -201 1446 196 57 29 chr3 130595593 130595874 -87441284 + AluJo SINE Alu 1 289 -23 1535 160 20 68 chr3 130595874 130596093 -87441065 + AluJo SINE Alu 117 318 0 7478 29 3 5 chr3 130596836 130597971 -87439187 - L1PA4 LINE L1 -3 6152 5017 1433 242 71 78 chr3 130598146 130599075 -87438083 + L1M4 LINE L1 3207 4129 -2017 1482 255 116 9 chr3 130599084 130599516 -87437642 + MLT1E LTR MaLR 8 485 -108 632 204 0 68 chr3 130599544 130599676 -87437482 + FLAM_A SINE Alu 1 123 -10 1710 237 103 31 chr3 130599846 130600808 -87436350 + L1MDa LINE L1 1048 2078 -4462 7605 12 0 0 chr3 130600888 130601929 -87435229 - L1HS LINE L1 0 6155 5115 2053 225 50 5 chr3 130601935 130603044 -87434114 + L1MDa LINE L1 2126 3276 -3264 1409 134 7 56 chr3 130603046 130603196 -87433962 - Tigger3(Golem) DNA MER2_type 0 3029 2896 1251 192 31 0 chr3 130603196 130603425 -87433733 + MER46A DNA MER2_type 1 236 0 1409 134 7 56 chr3 130603425 130603543 -87433615 - Tigger3(Golem) DNA MER2_type -133 2896 2774 468 200 136 9 chr3 130603541 130603651 -87433507 - Tigger3(Golem) DNA MER2_type -2885 144 21 * 23 0 0 0 chr3 130603695 130603718 -87433440 + AT_rich Low_complexity Low_complexity 1 23 0 4767 127 19 7 chr3 130603814 130604636 -87432522 - L1PA10 LINE L1 -1137 5009 4178 6223 99 9 9 chr3 130604639 130605789 -87431369 + L1PA10 LINE L1 5014 6164 -4 668 255 92 24 chr3 130605799 130606258 -87430900 + L1MDa LINE L1 3426 3915 -2625 897 262 124 7 chr3 130606425 130607005 -87430153 - L1MEc LINE L1 -3248 3292 2645 2068 122 7 0 chr3 130607056 130607343 -87429815 - AluSc SINE Alu -18 291 3 574 268 123 58 chr3 130607343 130607742 -87429416 - L1MEc LINE L1 -4094 2627 2203 313 342 13 25 chr3 130607763 130607921 -87429237 - L1MEc LINE L1 -4440 2100 1945 236 211 64 7 chr3 130607928 130608035 -87429123 - L1MC3 LINE L1 0 7995 7716 * 2583 214 38 23 chr3 130608030 130608694 -87428464 - L1MD2 LINE L1 -196 6163 5490 619 214 48 19 chr3 130608720 130608930 -87428228 - L1MD2 LINE L1 -1074 5072 4857 599 231 0 0 chr3 130608952 130609099 -87428059 - L1 LINE L1 -3113 3090 2944 737 224 103 40 chr3 130609113 130609489 -87427669 - LTR30 LTR ERV1 -20 529 112 16509 282 35 36 chr3 130609940 130616155 -87421003 - HERV3 LTR ERV1 -1833 6593 386 6483 102 106 89 chr3 130616322 130618153 -87419005 - pTR5 LTR ERV1 0 2438 748 653 223 107 43 chr3 130618155 130618532 -87418626 - LTR30 LTR ERV1 -21 529 108 5345 151 48 20 chr3 130618605 130620972 -87416186 - L1PBa LINE L1 -3237 2966 373 1726 230 60 7 chr3 130620972 130621520 -87415638 - L1MD2 LINE L1 -1306 4840 4264 645 315 10 0 chr3 130621521 130621721 -87415437 + MER45B DNA AcHobo 1 202 -838 517 237 144 0 chr3 130621730 130621945 -87415213 - L1MD2 LINE L1 -2167 3979 3734 1325 83 11 22 chr3 130621957 130622137 -87415021 + AluSc SINE Alu 1 178 -131 31658 49 2 3 chr3 130622255 130626463 -87410695 - L1P LINE L1 -1001 5145 945 1509 142 0 15 chr3 130626463 130626724 -87410434 - L1P LINE L1 -5889 257 1 * 8911 137 40 8 chr3 130626721 130628249 -87408909 - L1P3 LINE L1 -4884 1577 1 409 312 39 52 chr3 130628346 130628577 -87408581 - L3 LINE CR1 -589 988 761 1102 235 39 4 chr3 130628692 130628947 -87408211 - MSTB LTR MaLR -73 353 90 276 106 0 43 chr3 130628914 130628961 -87408197 + MSTA LTR MaLR 122 166 -262 * 491 181 179 40 chr3 130628965 130629089 -87408069 - MSTB LTR MaLR -305 152 1 286 130 0 0 chr3 130629972 130630026 -87407132 + L1 LINE L1 3424 3477 -2669 10830 214 29 6 chr3 130630251 130634123 -87403035 + L1PA16 LINE L1 2163 6157 -9 3509 166 19 30 chr3 130634709 130635588 -87401570 + L1P5 LINE L1 4478 5359 -792 2218 100 0 0 chr3 130635588 130635895 -87401263 + AluSc SINE Alu 1 307 0 3509 166 19 30 chr3 130635895 130636135 -87401023 + L1P5 LINE L1 5359 5600 -551 22 35 0 0 chr3 130636375 130636404 -87400754 + AT_rich Low_complexity Low_complexity 1 29 0 15786 161 36 31 chr3 130636715 130640843 -87396315 - L1PA10 LINE L1 -1 6482 2233 222 37 0 0 chr3 130640843 130640870 -87396288 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 15786 161 36 31 chr3 130640870 130643104 -87394054 - L1PA10 LINE L1 -4250 2233 10 295 365 56 6 chr3 130643373 130643551 -87393607 - MER117 DNA MER1_type -1 196 10 2178 106 3 10 chr3 130644153 130644464 -87392694 - AluSc SINE Alu 0 309 1 338 311 94 47 chr3 130645014 130645226 -87391932 + MIR SINE MIR 3 224 -38 22 35 0 0 chr3 130645377 130645406 -87391752 + AT_rich Low_complexity Low_complexity 1 29 0 2335 126 17 89 chr3 130646118 130646579 -87390579 - MSTA LTR MaLR 0 428 1 188 316 35 0 chr3 130646933 130646990 -87390168 + L2 LINE L2 3137 3195 -77 499 352 141 35 chr3 130648573 130649488 -87387670 - L2 LINE L2 -6 3266 2256 766 311 76 19 chr3 130649552 130649867 -87387291 + MER102b DNA MER1_type 2 334 -7 253 306 28 19 chr3 130650210 130650318 -87386840 + L1ME4a LINE L1 5963 6071 -50 351 243 65 9 chr3 130650544 130650651 -87386507 - MER103 DNA DNA -52 114 2 253 326 91 0 chr3 130650956 130651088 -87386070 - MIR SINE MIR -1 261 118 237 108 0 0 chr3 130652331 130652368 -87384790 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 42 20 0 0 chr3 130652696 130652745 -87384413 + AT_rich Low_complexity Low_complexity 1 49 0 391 265 13 20 chr3 130652849 130653000 -87384158 + L1ME LINE L1 4561 4710 -1436 500 194 65 22 chr3 130653427 130653566 -87383592 + HAL1 LINE L1 2248 2392 -115 23 0 0 0 chr3 130653673 130653696 -87383462 + AT_rich Low_complexity Low_complexity 1 23 0 246 300 0 0 chr3 130653872 130653942 -87383216 + L1ME LINE L1 5734 5803 -359 317 365 19 9 chr3 130654227 130654334 -87382824 + MIR SINE MIR 26 133 -129 369 280 113 21 chr3 130654338 130654577 -87382581 - L1M4 LINE L1 -965 5181 4921 1051 300 107 15 chr3 130654668 130655590 -87381568 - L1M4 LINE L1 -1344 4802 3796 2093 119 3 10 chr3 130655681 130655975 -87381183 + AluSx SINE Alu 1 292 -20 867 204 109 0 chr3 130656679 130656880 -87380278 + MER58A DNA MER1_type 2 224 0 1224 235 45 10 chr3 130657158 130657447 -87379711 - MLT1D LTR MaLR 0 505 207 367 247 13 0 chr3 130657500 130657577 -87379581 - MLT1D LTR MaLR -423 82 5 773 330 95 67 chr3 130657614 130657783 -87379375 + HERV16 LTR ERVL 368 531 -4465 985 249 82 72 chr3 130657783 130658244 -87378914 - MLT1C LTR MaLR 0 467 2 773 330 95 67 chr3 130658244 130659171 -87377987 + HERV16 LTR ERVL 531 1495 -3501 281 338 0 0 chr3 130659330 130659410 -87377748 + HERV16 LTR ERVL 1746 1825 -3660 1762 325 64 41 chr3 130659478 130660699 -87376459 + HERV16 LTR ERVL 1974 3222 -2542 540 241 80 7 chr3 130660740 130660877 -87376281 + HERV16 LTR ERVL 3321 3467 -2297 354 386 19 26 chr3 130660949 130661216 -87375942 + HERV16 LTR ERVL 3572 3836 -1928 535 332 87 39 chr3 130661244 130661973 -87375185 + L1 LINE L1 2835 3604 -2542 334 243 0 0 chr3 130661975 130662045 -87375113 + MER58A DNA MER1_type 5 74 -33 * 439 194 0 0 chr3 130662043 130662115 -87375043 + MER58A DNA MER1_type 153 224 0 3690 248 60 65 chr3 130662251 130663582 -87373576 + L1M3d LINE L1 1 937 -4954 700 229 0 0 chr3 130663582 130663713 -87373445 + FLAM_C SINE Alu 2 132 -1 3690 248 60 65 chr3 130663713 130664150 -87373008 + L1M3d LINE L1 937 1375 -4516 1726 145 78 31 chr3 130664166 130664524 -87372634 - THE1C LTR MaLR 0 375 1 1950 177 57 28 chr3 130664528 130664899 -87372259 - MSTC LTR MaLR -2 426 42 2137 136 0 25 chr3 130664899 130665333 -87371825 - L1PA5 LINE L1 0 6154 5732 1950 177 57 28 chr3 130665333 130665350 -87371808 - MSTC LTR MaLR -386 42 27 17477 40 5 0 chr3 130665591 130668510 -87368648 + L1PA3 LINE L1 3225 6152 -3 3219 255 83 21 chr3 130668856 130670104 -87367054 + L1MDa LINE L1 753 2078 -4462 10497 46 7 1 chr3 130670185 130672286 -87364872 - L1HS LINE L1 0 6155 4046 6319 99 4 19 chr3 130672268 130672322 -87364836 - L1P3 LINE L1 -623 5531 5478 * 2230 98 0 10 chr3 130672322 130672628 -87364530 - AluSc SINE Alu 0 309 7 6319 99 4 19 chr3 130672628 130673661 -87363497 - L1P3 LINE L1 -676 5478 4462 7239 39 0 4 chr3 130673761 130674691 -87362467 - L1PA5 LINE L1 -30 6124 5198 1564 115 0 52 chr3 130674748 130675000 -87362158 - MER1A DNA MER1_type -162 367 129 585 323 24 39 chr3 130675108 130675452 -87361706 + L1M1 LINE L1 192 1337 -5769 4749 150 3 6 chr3 130675573 130676352 -87360806 + L1PA15 LINE L1 5390 6165 0 946 166 57 0 chr3 130676348 130676559 -87360599 + L1MA5 LINE L1 3191 3413 -2733 * 7653 187 29 5 chr3 130676549 130678070 -87359088 + L1MA5 LINE L1 3652 5212 -934 1712 195 39 12 chr3 130678070 130678486 -87358672 + L1MA5 LINE L1 5874 6300 0 522 292 117 0 chr3 130678509 130678663 -87358495 - MIR SINE MIR -86 176 5 431 169 227 0 chr3 130678962 130679099 -87358059 + L1 LINE L1 5175 5346 -800 306 255 49 0 chr3 130679098 130679200 -87357958 + L1MA8 LINE L1 4927 5033 -1113 * 4398 174 42 19 chr3 130679204 130680136 -87357022 + L1MA8 LINE L1 5338 6290 -1 2063 127 7 0 chr3 130680224 130680516 -87356642 + AluSp SINE Alu 1 294 -19 5660 227 69 24 chr3 130680678 130682630 -87354528 + L1MB1 LINE L1 2016 4075 -2307 2433 218 3 65 chr3 130682633 130683313 -87353845 + L1MB1 LINE L1 4953 5590 -792 258 252 149 0 chr3 130683337 130683444 -87353714 + L1M4c LINE L1 2073 2195 -4189 * 3108 170 44 85 chr3 130683443 130684286 -87352872 + L1MB1 LINE L1 5596 6403 -1 533 251 55 18 chr3 130684289 130684508 -87352650 + L1M4c LINE L1 3954 4180 -2202 403 312 73 15 chr3 130684550 130684755 -87352403 + L1ME3A LINE L1 1598 1814 -4582 2476 199 25 29 chr3 130684850 130685367 -87351791 + MLT2B2 LTR ERVL 1 515 0 678 288 81 0 chr3 130685556 130685913 -87351245 + L1ME3A LINE L1 2186 2534 -3681 1657 276 15 23 chr3 130686059 130686711 -87350447 + L1ME3A LINE L1 2559 3205 -3010 2120 193 16 73 chr3 130686711 130687256 -87349902 + MLT2B1 LTR ERVL 1 514 -6 357 206 114 0 chr3 130687258 130687389 -87349769 + L1ME3A LINE L1 3201 3346 -2869 532 285 81 30 chr3 130687414 130687712 -87349446 + L1ME3A LINE L1 3880 4192 -2023 728 229 100 57 chr3 130687720 130688227 -87348931 + L1ME3A LINE L1 5561 6126 -113 27 49 0 0 chr3 130688327 130688368 -87348790 + AT_rich Low_complexity Low_complexity 1 41 0 204 154 0 26 chr3 130688425 130688464 -87348694 + CT-rich Low_complexity Low_complexity 1 38 0 399 309 110 13 chr3 130688475 130688931 -87348227 + L1 LINE L1 4030 4529 -1617 225 272 193 28 chr3 130688971 130689261 -87347897 - L1MDa LINE L1 -3055 3485 3148 224 404 18 0 chr3 130689274 130689388 -87347770 - L2 LINE L2 -18 3295 3180 510 154 39 0 chr3 130689417 130689521 -87347637 - MER90 LTR ERV1 -362 252 145 2150 119 3 22 chr3 130689907 130690219 -87346939 + AluSx SINE Alu 1 306 -6 33 73 0 0 chr3 130691007 130691075 -87346083 + AT_rich Low_complexity Low_complexity 1 68 0 377 337 155 49 chr3 130693402 130694455 -87342703 + L2 LINE L2 1814 2977 -337 368 239 14 0 chr3 130695658 130695729 -87341429 - L2 LINE L2 -4 3309 3238 1104 212 86 31 chr3 130695746 130696072 -87341086 - MER2 DNA MER2_type 0 344 1 372 278 142 6 chr3 130696235 130696397 -87340761 + MIR SINE MIR 79 262 0 420 211 6 109 chr3 130698245 130698420 -87338738 - L1MEc LINE L1 -3140 3075 2919 616 204 0 26 chr3 130698459 130698572 -87338586 - FLAM_C SINE Alu -33 110 1 387 303 174 40 chr3 130698576 130698724 -87338434 - L1MEc LINE L1 -3303 2912 2785 2635 29 0 10 chr3 130698724 130699033 -87338125 - AluY SINE Alu -5 306 1 387 303 174 40 chr3 130699033 130699211 -87337947 - L1MEc LINE L1 -3430 2785 2542 443 298 28 0 chr3 130699219 130699397 -87337761 - L1MDa LINE L1 -3506 3034 2852 230 320 0 13 chr3 130699425 130699503 -87337655 - MER2 DNA MER2_type -1 344 268 24 53 0 0 chr3 130699503 130699541 -87337617 + AT_rich Low_complexity Low_complexity 1 38 0 1086 142 61 5 chr3 130699542 130699739 -87337419 - MER2 DNA MER2_type -135 210 3 705 295 95 40 chr3 130699779 130700667 -87336491 - L1MDa LINE L1 -3987 2553 1618 317 270 109 29 chr3 130700885 130701054 -87336104 + L1M4 LINE L1 4006 4186 -1960 7118 63 1 2 chr3 130701398 130702702 -87334456 + L1PA8 LINE L1 4867 6170 -2 21 0 0 0 chr3 130702872 130702893 -87334265 + AT_rich Low_complexity Low_complexity 1 21 0 711 185 72 81 chr3 130703039 130703261 -87333897 - L1MB8 LINE L1 -6 6172 5953 4331 170 32 55 chr3 130703263 130704255 -87332903 + L1MA9 LINE L1 5306 6274 -38 252 288 0 34 chr3 130704347 130704465 -87332693 - L1MEc LINE L1 -4714 1682 1569 1761 148 20 13 chr3 130704669 130704974 -87332184 - MER61A LTR ERV1 -36 307 1 353 281 82 53 chr3 130704976 130705114 -87332044 - L1MEc LINE L1 -4870 1335 1203 1713 158 38 10 chr3 130705114 130705406 -87331752 - AluJb SINE Alu -12 300 1 353 281 82 53 chr3 130705406 130705816 -87331342 - L1MEc LINE L1 -5002 1203 771 373 256 105 26 chr3 130705893 130706084 -87331074 + L1MC4 LINE L1 7836 8041 -1 30343 103 10 15 chr3 130706588 130712459 -87324699 + L1PA7 LINE L1 618 6487 0 332 229 48 1 chr3 130712459 130712564 -87324594 + L1MCc LINE L1 54 675 -6266 1375 133 79 12 chr3 130712565 130712805 -87324353 - Tigger2 DNA MER2_type -1 2717 2462 4161 173 14 8 chr3 130712870 130713610 -87323548 - Tigger2 DNA MER2_type -1974 744 1 307 289 39 109 chr3 130713615 130713926 -87323232 + L1MCc LINE L1 503 791 -5631 1004 231 108 3 chr3 130714294 130714601 -87322557 + L1MCc LINE L1 1047 1385 -5038 1706 235 63 26 chr3 130714621 130715389 -87321769 + L1MCc LINE L1 2759 3518 -3423 395 251 87 5 chr3 130715390 130715609 -87321549 + L1MCc LINE L1 3829 4065 -2876 275 252 126 47 chr3 130715909 130716226 -87320932 + HAL1b LINE L1 84 425 -923 4889 166 11 22 chr3 130716377 130717407 -87319751 + L1MB3 LINE L1 5162 6180 -3 282 253 13 27 chr3 130717407 130717482 -87319676 + MLT1J2 LTR MaLR 64 137 -313 25 0 0 0 chr3 130717606 130717631 -87319527 + AT_rich Low_complexity Low_complexity 1 25 0 2135 208 0 59 chr3 130717691 130718197 -87318961 + L1PBa LINE L1 206 681 -6182 6932 113 66 14 chr3 130718215 130719690 -87317468 + L1PBa LINE L1 1297 2846 -4017 1966 146 7 3 chr3 130719691 130719992 -87317166 + AluSq SINE Alu 1 302 -11 358 67 0 33 chr3 130719995 130720055 -87317103 + (GAGAA)n Simple_repeat Simple_repeat 4 61 0 224 200 0 22 chr3 130720057 130720102 -87317056 + G-rich Low_complexity Low_complexity 4 47 0 348 47 0 0 chr3 130720103 130720146 -87317012 + L1PBa LINE L1 2834 2876 -3987 505 150 0 0 chr3 130720146 130720226 -87316932 + AluSp/q SINE Alu 230 309 -4 284 164 33 0 chr3 130720226 130720287 -87316871 + GA-rich Low_complexity Low_complexity 2 64 0 277 105 0 0 chr3 130720288 130720326 -87316832 + L1PBa LINE L1 2833 2870 -3993 600 150 20 0 chr3 130720326 130720426 -87316732 + AluSp/q SINE Alu 194 295 -18 207 0 0 0 chr3 130720431 130720454 -87316704 + (GGAGA)n Simple_repeat Simple_repeat 2 24 0 4826 204 59 8 chr3 130720454 130720550 -87316608 + L1 LINE L1 2120 2210 -3936 1971 138 0 14 chr3 130720550 130720887 -87316271 + AluSx SINE Alu 1 333 0 4826 204 59 8 chr3 130720887 130721961 -87315197 + L1 LINE L1 2210 3353 -2793 2812 232 28 3 chr3 130721967 130722647 -87314511 + L1 LINE L1 3698 4394 -1752 502 193 6 31 chr3 130722660 130722821 -87314337 + GA-rich Low_complexity Low_complexity 2 158 0 7461 149 18 39 chr3 130722825 130724245 -87312913 + L1PA6 LINE L1 684 2074 -4072 12474 46 4 5 chr3 130724246 130725822 -87311336 - L1PA4 LINE L1 -851 5295 3722 6795 38 15 8 chr3 130725822 130726668 -87310490 + L1PA4 LINE L1 5302 6154 -1 5715 106 9 3 chr3 130726715 130727562 -87309596 + L1PA6 LINE L1 2064 2915 -3231 4864 58 3 9 chr3 130727566 130728199 -87308959 + L1PA6 LINE L1 3650 4278 -1868 * 5008 63 1 0 chr3 130728194 130728844 -87308314 - L1P LINE L1 -865 5281 4631 9244 62 5 128 chr3 130729152 130730675 -87306483 - SVA Other Other 0 1386 52 291 28 0 0 chr3 130730675 130730711 -87306447 + (GGGAGA)n Simple_repeat Simple_repeat 1 36 0 473 74 139 0 chr3 130730717 130730823 -87306335 - L1P LINE L1 -1510 4636 4501 3146 68 5 0 chr3 130730833 130731245 -87305913 + L1PA5 LINE L1 5736 6149 -5 8549 61 3 1 chr3 130731245 130733105 -87304053 + L1PA6 LINE L1 4269 6133 -21 198 0 0 0 chr3 130733108 130733130 -87304028 + (TAA)n Simple_repeat Simple_repeat 3 24 0 1548 219 43 8 chr3 130733161 130733554 -87303604 - L1MB8 LINE L1 -10 6168 5762 256 146 0 0 chr3 130733557 130733598 -87303560 + AluJ/FLAM SINE Alu 32 72 -230 492 66 0 0 chr3 130733598 130733659 -87303499 + AluJo/FRAM SINE Alu 192 252 -60 1383 230 51 19 chr3 130733727 130734064 -87303094 - L1MEc LINE L1 -2500 3882 3527 2286 89 0 32 chr3 130734064 130734377 -87302781 - AluSc SINE Alu -6 303 1 1383 230 51 19 chr3 130734377 130734469 -87302689 - L1MEc LINE L1 -2855 3527 3439 305 125 97 0 chr3 130734473 130734545 -87302613 - L1MA9 LINE L1 0 6312 6234 911 174 58 58 chr3 130734574 130734816 -87302342 - L1MA9 LINE L1 -300 6012 5771 225 333 29 0 chr3 130734839 130734908 -87302250 - MIR SINE MIR -104 104 34 287 197 0 0 chr3 130735039 130735100 -87302058 - L1MA9 LINE L1 -949 5197 5137 * 1272 167 4 37 chr3 130735099 130735316 -87301842 - L1MA9 LINE L1 -1393 4753 4545 1791 109 98 15 chr3 130735316 130735590 -87301568 - AluSx SINE Alu -14 298 2 1272 167 4 37 chr3 130735590 130735642 -87301516 - L1MA9 LINE L1 -1601 4545 4493 463 252 28 78 chr3 130735641 130735808 -87301350 - L1MEc LINE L1 -2933 3449 3304 * 1338 200 64 24 chr3 130735808 130735988 -87301170 - AluJb SINE Alu -5 307 109 333 0 0 0 chr3 130735988 130736025 -87301133 + (ATTG)n Simple_repeat Simple_repeat 4 40 0 1338 200 64 24 chr3 130736025 130736139 -87301019 - AluJb SINE Alu -203 109 1 463 252 28 78 chr3 130736139 130736293 -87300865 - L1MEc LINE L1 -3078 3304 3144 * 658 278 19 22 chr3 130736284 130736629 -87300529 - L1MEc LINE L1 -3797 2585 2301 22829 109 11 10 chr3 130736646 130740996 -87296162 - L1PA8 LINE L1 -2 6170 1825 1430 143 0 0 chr3 130740996 130741212 -87295946 - AluSx SINE Alu -96 216 1 32 43 0 0 chr3 130741276 130741322 -87295836 + AT_rich Low_complexity Low_complexity 1 46 0 1296 275 90 21 chr3 130741619 130742230 -87294928 - L1MEc LINE L1 -4553 1831 1179 2223 100 0 3 chr3 130743114 130743405 -87293753 + AluY SINE Alu 1 290 -21 2013 196 20 13 chr3 130744310 130744703 -87292455 - MSTD LTR MaLR 0 396 1 24 53 0 0 chr3 130745036 130745074 -87292084 + AT_rich Low_complexity Low_complexity 1 38 0 26 50 0 0 chr3 130745624 130745664 -87291494 + AT_rich Low_complexity Low_complexity 1 40 0 1942 137 0 13 chr3 130745685 130745985 -87291173 + AluSx SINE Alu 1 296 -16 24 32 0 0 chr3 130746084 130746115 -87291043 + AT_rich Low_complexity Low_complexity 1 31 0 7369 46 0 0 chr3 130746309 130747650 -87289508 + L1PA5 LINE L1 4811 6151 -3 4694 65 13 19 chr3 130747936 130748570 -87288588 - L1PA7 LINE L1 -11 6143 5514 10410 49 7 0 chr3 130748590 130750673 -87286485 - L1PA5 LINE L1 0 6154 4064 30248 125 14 64 chr3 130750673 130750724 -87286434 - L1PA7 LINE L1 -625 5529 5477 2203 101 0 10 chr3 130750724 130751030 -87286128 - AluSc SINE Alu 0 309 7 30248 125 14 64 chr3 130751030 130756792 -87280366 - L1PA7 LINE L1 -677 5477 12 533 89 21 84 chr3 130757156 130757347 -87279811 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 415 165 44 6 chr3 130757308 130757466 -87279692 + (TATAG)n Simple_repeat Simple_repeat 2 165 0 * 244 196 20 39 chr3 130757471 130757573 -87279585 + (TTATA)n Simple_repeat Simple_repeat 3 102 0 260 262 175 19 chr3 130757956 130758059 -87279099 + MIR SINE MIR 79 197 -65 618 273 0 18 chr3 130758886 130759051 -87278107 + MIR SINE MIR 101 262 0 1292 209 32 32 chr3 130759131 130759476 -87277682 - L1ME1 LINE L1 -18 6148 5804 231 336 32 16 chr3 130759678 130759803 -87277355 + MER103 DNA DNA 4 130 -36 774 267 33 14 chr3 130759920 130760130 -87277028 + MIR SINE MIR 46 259 -3 22 0 0 0 chr3 130760630 130760652 -87276506 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr3 130760779 130760808 -87276350 + AT_rich Low_complexity Low_complexity 1 29 0 793 161 0 16 chr3 130762971 130763126 -87274032 + FLAM_C SINE Alu 1 133 0 503 269 48 12 chr3 130763234 130763401 -87273757 + MIR SINE MIR 20 192 -70 278 360 76 12 chr3 130763913 130764085 -87273073 - L2 LINE L2 -1075 2239 2057 255 202 56 45 chr3 130765321 130765410 -87271748 - PABL_B-int LTR ERV1 -2454 4075 3986 481 319 7 9 chr3 130765800 130765953 -87271205 - PABL_B-int LTR ERV1 -531 4405 3605 269 227 0 76 chr3 130766037 130766103 -87271055 - PABL_B-int LTR ERV1 -897 5049 4989 1215 217 86 82 chr3 130766124 130766456 -87270702 - PABL_B-int LTR ERV1 -886 5377 5048 1700 157 14 11 chr3 130766456 130766743 -87270415 + AluJo SINE Alu 1 288 -24 1215 217 86 82 chr3 130766743 130767450 -87269708 - PABL_B-int LTR ERV1 -1215 5048 3501 401 159 28 65 chr3 130767497 130767604 -87269554 - PABL_B-int LTR ERV1 -2867 3731 3629 1299 198 84 80 chr3 130767692 130767752 -87269406 - PABL_B-int LTR ERV1 -2609 4067 4009 2191 119 3 3 chr3 130767752 130768062 -87269096 + AluSx SINE Alu 1 310 -2 1299 198 84 80 chr3 130768062 130768693 -87268465 - PABL_B-int LTR ERV1 -2667 4009 1585 1716 194 10 3 chr3 130768701 130769011 -87268147 - AluJo SINE Alu 0 312 1 845 202 88 26 chr3 130769163 130769608 -87267550 - PABL_B-int LTR ERV1 -3211 3120 1197 1243 208 43 35 chr3 130769668 130770039 -87267119 - PABL_B-int LTR ERV1 -3211 3120 1307 359 250 29 29 chr3 130770498 130770602 -87266556 - PABL_B-int LTR ERV1 -5418 1704 1601 298 351 0 27 chr3 130771099 130771247 -87265911 - PABL_B-int LTR ERV1 -5353 910 767 2154 193 85 15 chr3 130771806 130772278 -87264880 - LTR45B LTR ERV1 0 603 1 312 191 72 29 chr3 130773625 130773778 -87263380 + L2 LINE L2 3107 3309 -4 32 0 0 0 chr3 130774146 130774178 -87262980 + AT_rich Low_complexity Low_complexity 1 32 0 248 136 0 0 chr3 130774179 130774223 -87262935 - L1MB4 LINE L1 -2 6178 6135 190 312 65 21 chr3 130774331 130774424 -87262734 + L2 LINE L2 2295 2391 -923 411 21 0 0 chr3 130774974 130775022 -87262136 + (CA)n Simple_repeat Simple_repeat 2 49 0 1691 195 52 9 chr3 130775464 130775792 -87261366 - MSTB1 LTR MaLR 0 432 91 4666 214 62 30 chr3 130775818 130777288 -87259870 - MSTB1-int LTR MaLR 0 1580 1 2024 138 94 27 chr3 130777288 130777693 -87259465 - MSTB1 LTR MaLR 0 432 1 22 35 0 0 chr3 130777712 130777741 -87259417 + AT_rich Low_complexity Low_complexity 1 29 0 3539 15 2 0 chr3 130778617 130779029 -87258129 + L1PA3 LINE L1 5743 6155 0 232 313 81 20 chr3 130779231 130779330 -87257828 - MER91C DNA MER1_type -35 105 1 233 361 48 18 chr3 130779929 130780095 -87257063 - L3 LINE CR1 -5 1572 1402 2290 247 75 26 chr3 130780143 130780522 -87256636 + L1MDa LINE L1 1 360 -6180 444 37 0 0 chr3 130780522 130780576 -87256582 + (CA)n Simple_repeat Simple_repeat 2 55 0 2290 247 75 26 chr3 130780576 130780853 -87256305 + L1MDa LINE L1 360 914 -5626 3775 170 103 52 chr3 130780854 130781943 -87255215 + L1MDa LINE L1 1544 2685 -3855 484 308 45 49 chr3 130781967 130782233 -87254925 + L1M3d LINE L1 413 677 -5626 3065 247 55 32 chr3 130782538 130782731 -87254427 + L1M3d LINE L1 800 987 -5395 3098 140 40 0 chr3 130782731 130783225 -87253933 + MER75 DNA T2_type 1 514 0 3065 247 55 32 chr3 130783225 130783606 -87253552 + L1M3d LINE L1 987 1358 -5024 237 33 0 0 chr3 130783606 130783636 -87253522 + (GA)n Simple_repeat Simple_repeat 1 30 0 3065 247 55 32 chr3 130783636 130785191 -87251967 + L1M3d LINE L1 1358 2972 -3410 2391 120 3 15 chr3 130785191 130785533 -87251625 + MER1B DNA MER1_type 1 338 -1 21 57 0 0 chr3 130785741 130785776 -87251382 + AT_rich Low_complexity Low_complexity 1 35 0 1690 225 44 19 chr3 130785782 130786251 -87250907 + L1ME1 LINE L1 5685 6161 -5 714 249 20 5 chr3 130786300 130786501 -87250657 - L1M4 LINE L1 -1286 4860 4657 5439 203 37 41 chr3 130786511 130787205 -87249953 - L1PA16 LINE L1 -9 6157 5462 2139 131 0 6 chr3 130787205 130787519 -87249639 - AluSx SINE Alu 0 312 1 5439 203 37 41 chr3 130787519 130789424 -87247734 - L1PA16 LINE L1 -704 5462 3574 1932 140 0 20 chr3 130791233 130791534 -87245624 + AluSx SINE Alu 1 325 0 250 33 0 0 chr3 130791534 130791564 -87245594 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 24 0 0 0 chr3 130791645 130791669 -87245489 + AT_rich Low_complexity Low_complexity 1 24 0 1253 216 60 1 chr3 130791851 130792313 -87244845 - MLT1E1 LTR MaLR -4 650 104 1559 174 44 139 chr3 130792360 130792795 -87244363 - L1MD3 LINE L1 0 8041 7703 2050 57 6 82 chr3 130792795 130793111 -87244047 - AluY SINE Alu -19 292 1 1559 174 44 139 chr3 130793111 130793331 -87243827 - L1MD3 LINE L1 -338 7703 7463 259 364 114 0 chr3 130793722 130793862 -87243296 + MIR SINE MIR 104 259 -3 278 77 0 0 chr3 130794616 130794655 -87242503 - L1MA8 LINE L1 -44 6247 6209 404 222 65 184 chr3 130795119 130795412 -87241746 + MIR SINE MIR 5 262 0 194 125 0 25 chr3 130795850 130795890 -87241268 + (CA)n Simple_repeat Simple_repeat 1 39 0 31 88 0 0 chr3 130795954 130796034 -87241124 + AT_rich Low_complexity Low_complexity 1 80 0 1796 169 7 0 chr3 130796805 130797089 -87240069 + AluJo SINE Alu 5 290 -22 246 253 0 25 chr3 130797697 130797776 -87239382 - L2 LINE L2 -773 2541 2465 25 51 0 0 chr3 130797903 130797942 -87239216 + AT_rich Low_complexity Low_complexity 1 39 0 25 65 0 0 chr3 130798432 130798478 -87238680 + AT_rich Low_complexity Low_complexity 1 46 0 431 259 32 39 chr3 130798579 130798871 -87238287 - L1MDb LINE L1 -5063 1346 1046 588 313 107 10 chr3 130799184 130799475 -87237683 - L1MC/D LINE L1 -2236 5572 5254 391 291 96 72 chr3 130799487 130799903 -87237255 - L1MC/D LINE L1 -907 5239 4814 865 283 50 34 chr3 130800459 130800936 -87236222 + L1M4 LINE L1 3515 3999 -2147 1275 246 25 19 chr3 130801005 130801366 -87235792 - MLT1A1 LTR MaLR -2 363 1 1817 185 0 35 chr3 130801372 130801506 -87235652 - MLT1A1-int LTR MaLR -7 1728 1591 2020 130 25 0 chr3 130801506 130801791 -87235367 + AluSx SINE Alu 1 292 -20 1817 185 0 35 chr3 130801791 130801997 -87235161 - MLT1A1-int LTR MaLR -144 1591 1400 * 6855 99 13 33 chr3 130801957 130807722 -87229436 + L1PA7 LINE L1 785 6466 -3 429 250 57 117 chr3 130808500 130808800 -87228358 - LTR40a LTR ERVL -1 518 237 3489 216 97 27 chr3 130809361 130809618 -87227540 - L1MC4 LINE L1 -202 7840 7602 2082 134 0 0 chr3 130809618 130809909 -87227249 - AluSx SINE Alu -21 291 1 3489 216 97 27 chr3 130809909 130810715 -87226443 - L1MC4 LINE L1 -440 7602 6703 251 193 0 0 chr3 130810843 130810900 -87226258 - L1MC/D LINE L1 -2191 3955 3899 1013 138 116 16 chr3 130810901 130811090 -87226068 - MSTA LTR MaLR 0 428 221 2865 251 52 65 chr3 130811101 130814050 -87223108 - L1 LINE L1 -3304 3863 1294 1673 241 57 15 chr3 130814118 130814665 -87222493 - L1M4 LINE L1 -1195 5020 4451 * 2301 257 84 28 chr3 130814663 130816127 -87221031 - L1MEc LINE L1 -3476 2739 1243 884 245 109 21 chr3 130816159 130816199 -87220959 - L1MEc LINE L1 -5237 1159 1124 1948 193 25 6 chr3 130816199 130816557 -87220601 - MLT1A1 LTR MaLR 0 365 1 884 245 109 21 chr3 130816557 130816937 -87220221 - L1MEc LINE L1 -5272 1124 702 1228 321 58 15 chr3 130816943 130817491 -87219667 - L1MEc LINE L1 -5764 632 61 339 320 51 45 chr3 130817790 130817968 -87219190 - MIR SINE MIR -46 216 38 21 0 0 0 chr3 130819526 130819547 -87217611 + AT_rich Low_complexity Low_complexity 1 21 0 666 216 0 0 chr3 130819946 130820083 -87217075 + FLAM_C SINE Alu 1 137 0 38 61 0 0 chr3 130820084 130820150 -87217008 + AT_rich Low_complexity Low_complexity 1 66 0 23 0 0 0 chr3 130820184 130820207 -87216951 + AT_rich Low_complexity Low_complexity 1 23 0 314 176 0 0 chr3 130820640 130820691 -87216467 - Charlie5 DNA MER1_type -2521 91 41 24 0 0 0 chr3 130820811 130820835 -87216323 + AT_rich Low_complexity Low_complexity 1 24 0 56 29 0 0 chr3 130821136 130821206 -87215952 + AT_rich Low_complexity Low_complexity 1 70 0 1020 200 48 0 chr3 130822678 130822888 -87214270 + MER58B DNA MER1_type 122 341 0 351 44 0 0 chr3 130823036 130823081 -87214077 + (TG)n Simple_repeat Simple_repeat 2 46 0 260 286 107 64 chr3 130824364 130824504 -87212654 - MIR SINE MIR -87 175 30 232 347 24 80 chr3 130824819 130824985 -87212173 + MIR SINE MIR 21 175 -64 209 304 68 40 chr3 130824999 130825147 -87212011 - MIR SINE MIR -75 187 36 396 327 175 11 chr3 130825560 130825823 -87211335 - L2 LINE L2 -3 3310 3005 901 296 125 33 chr3 130825866 130826345 -87210813 + L1MCc LINE L1 53 575 -5821 * 2006 204 31 47 chr3 130826339 130826701 -87210457 + L1M4 LINE L1 4095 4444 -1702 2365 72 0 0 chr3 130826701 130826994 -87210164 + AluSg SINE Alu 1 293 -17 2006 204 31 47 chr3 130826994 130827250 -87209908 + L1M4 LINE L1 4444 4703 -1443 4072 165 6 2 chr3 130827250 130828078 -87209080 - L1PA15 LINE L1 -269 5896 5068 973 152 6 0 chr3 130828077 130828235 -87208923 + L1PA15 LINE L1 5948 6106 -59 * 13497 181 16 18 chr3 130828230 130832188 -87204970 + L1PB1 LINE L1 2208 6151 0 1264 250 18 51 chr3 130832202 130832650 -87204508 + L1ME1 LINE L1 5722 6327 -7 1570 302 94 73 chr3 130832681 130832729 -87204429 - L2 LINE L2 -339 2975 2929 2177 117 0 3 chr3 130832729 130833036 -87204122 + AluSq SINE Alu 1 306 -7 1570 302 94 73 chr3 130833036 130833930 -87203228 - L2 LINE L2 -385 2929 1990 216 0 0 0 chr3 130833930 130833954 -87203204 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1570 302 94 73 chr3 130833954 130834429 -87202729 - L2 LINE L2 -1324 1990 1527 464 230 20 20 chr3 130834804 130834904 -87202254 + MER20 DNA MER1_type 8 107 -112 342 0 0 0 chr3 130836353 130836391 -87200767 + (TG)n Simple_repeat Simple_repeat 1 38 0 406 240 22 82 chr3 130836432 130836622 -87200536 + L1MCc LINE L1 549 749 -5255 2012 126 0 3 chr3 130836622 130836907 -87200251 + AluSx SINE Alu 1 284 -28 406 240 22 82 chr3 130836907 130837047 -87200111 + L1MCc LINE L1 749 1034 -4970 2158 121 15 67 chr3 130837048 130837454 -87199704 - L1M3 LINE L1 -427 5741 5357 875 248 5 0 chr3 130837448 130837654 -87199504 + L1MB1 LINE L1 4963 5169 -977 * 2437 152 12 7 chr3 130837654 130838076 -87199082 + L1MB1 LINE L1 5736 6159 -9 272 267 40 22 chr3 130838619 130838770 -87198388 + L1M3de LINE L1 1081 1435 -4701 * 798 273 27 18 chr3 130838767 130838855 -87198303 + L1MCc LINE L1 1305 1391 -5005 1752 149 43 7 chr3 130838855 130839156 -87198002 + AluJb SINE Alu 1 312 0 798 273 27 18 chr3 130839156 130839397 -87197761 + L1MCc LINE L1 1391 1637 -4759 1415 260 57 41 chr3 130839407 130840091 -87197067 + L1MCc LINE L1 1687 2381 -4015 * 13890 41 3 1 chr3 130840087 130841810 -87195348 - L1PA4 LINE L1 -1383 4763 3036 7504 27 9 0 chr3 130841810 130843188 -87193970 + L1PA4 LINE L1 4765 6155 0 4669 257 78 9 chr3 130843188 130845175 -87191983 + L1MCc LINE L1 2334 4458 -1757 5409 205 66 52 chr3 130845181 130847227 -87189931 + L1MCc LINE L1 -731 1451 -4766 1311 98 41 0 chr3 130847227 130847421 -87189737 + L1PA10 LINE L1 5962 6163 -5 5409 205 66 52 chr3 130847421 130847649 -87189509 + L1MCc LINE L1 1451 1674 -4543 1412 248 69 43 chr3 130847812 130848778 -87188380 + L1MCc LINE L1 1746 2693 -3522 * 2235 249 84 35 chr3 130848775 130849479 -87187679 + L1MCc LINE L1 4504 5172 -1061 2177 95 0 17 chr3 130849479 130849775 -87187383 + AluY SINE Alu 1 291 -20 2199 119 0 0 chr3 130849777 130850070 -87187088 + AluSx SINE Alu 1 293 -19 2235 249 84 35 chr3 130850070 130850440 -87186718 + L1MCc LINE L1 5172 5636 -597 264 237 42 22 chr3 130850496 130850615 -87186543 + L1M3 LINE L1 5676 5796 -325 7034 37 0 0 chr3 130850662 130851520 -87185638 + L1P LINE L1 4310 5167 -979 198 0 0 0 chr3 130851520 130851542 -87185616 + (T)n Simple_repeat Simple_repeat 1 22 0 6326 75 18 45 chr3 130851609 130852589 -87184569 - SVA Other Other 0 1386 433 1133 122 49 19 chr3 130852606 130852869 -87184289 - SVA Other Other -520 866 596 5566 72 25 54 chr3 130852898 130853732 -87183426 - SVA Other Other -520 866 57 459 0 0 0 chr3 130853732 130853783 -87183375 + (GGGAGA)n Simple_repeat Simple_repeat 5 55 0 7447 34 2 2 chr3 130853791 130854796 -87182362 + L1PA4 LINE L1 5151 6155 0 2229 118 7 3 chr3 130854867 130855172 -87181986 + AluSx SINE Alu 1 306 -6 331 311 57 28 chr3 130855626 130855803 -87181355 + MIR SINE MIR 55 236 -26 403 337 12 48 chr3 130856444 130856610 -87180548 + MIR3 SINE MIR 42 201 -7 26 0 0 0 chr3 130857022 130857048 -87180110 + AT_rich Low_complexity Low_complexity 1 26 0 948 128 0 0 chr3 130857324 130857457 -87179701 + FLAM_C SINE Alu 1 133 0 25 0 0 0 chr3 130857457 130857482 -87179676 + AT_rich Low_complexity Low_complexity 1 25 0 821 103 0 8 chr3 130858982 130859099 -87178059 + FLAM_C SINE Alu 1 116 -17 21 0 0 0 chr3 130859109 130859130 -87178028 + AT_rich Low_complexity Low_complexity 1 21 0 1166 275 115 8 chr3 130859132 130859757 -87177401 - L1M4 LINE L1 -1449 4697 4006 2302 81 7 0 chr3 130859849 130860146 -87177012 - AluY SINE Alu -12 299 1 549 204 29 0 chr3 130860696 130860799 -87176359 - MER5A DNA MER1_type -83 106 1 5436 114 19 2 chr3 130861000 130861344 -87175814 - L1PA16 LINE L1 -9 6157 5820 2271 91 10 0 chr3 130861344 130861641 -87175517 + AluSp SINE Alu 1 300 -13 5436 114 19 2 chr3 130861641 130862525 -87174633 - L1PA16 LINE L1 -346 5820 4966 246 300 10 40 chr3 130862733 130862833 -87174325 - L2 LINE L2 0 3272 3176 267 336 172 33 chr3 130862919 130863041 -87174117 + MER91A DNA MER1_type 31 169 -27 457 302 96 24 chr3 130864884 130865117 -87172041 - MIR SINE MIR 0 262 11 622 259 142 43 chr3 130867378 130867610 -87169548 - MIR SINE MIR 0 262 8 2259 109 0 3 chr3 130867614 130867918 -87169240 + AluSx SINE Alu 1 303 -9 271 150 33 0 chr3 130868154 130868214 -87168944 + (TA)n Simple_repeat Simple_repeat 1 62 0 414 315 99 30 chr3 130868494 130868726 -87168432 + L3 LINE CR1 1249 1496 -81 1906 124 7 0 chr3 130868731 130869004 -87168154 + AluSx SINE Alu 5 279 -33 6687 202 46 25 chr3 130869250 130872437 -87164721 + L1MA3 LINE L1 601 2906 -3957 * 11164 154 34 40 chr3 130872428 130873037 -87164121 + L1PA13 LINE L1 2894 3506 -2657 1957 141 27 38 chr3 130873037 130873405 -87163753 + THE1B LTR MaLR 1 364 0 11164 154 34 40 chr3 130873405 130875363 -87161795 + L1PA13 LINE L1 3506 5476 -687 1719 188 7 0 chr3 130875363 130875650 -87161508 + AluJb SINE Alu 1 289 -23 192 111 0 0 chr3 130875655 130875691 -87161467 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 11164 154 34 40 chr3 130875691 130876415 -87160743 + L1PA13 LINE L1 5480 6163 0 10570 184 32 62 chr3 130876417 130877510 -87159648 + L1MA3 LINE L1 2919 4043 -2978 1730 103 5 0 chr3 130877510 130877733 -87159425 + AluSx SINE Alu 1 224 -88 10570 184 32 62 chr3 130877733 130878237 -87158921 + L1MA3 LINE L1 4043 4561 -2460 185 81 0 27 chr3 130878237 130878274 -87158884 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 10570 184 32 62 chr3 130878274 130879475 -87157683 + L1MA3 LINE L1 4561 5539 -1482 2794 61 3 13 chr3 130879475 130879850 -87157308 - L1PA6 LINE L1 0 6154 5784 10570 184 32 62 chr3 130879850 130881290 -87155868 + L1MA3 LINE L1 5539 7021 0 376 191 0 0 chr3 130881299 130881362 -87155796 + MER8 DNA MER2_type 177 239 0 7549 27 16 0 chr3 130881495 130882490 -87154668 - L1PA3 LINE L1 0 6155 5156 8850 38 0 0 chr3 130882490 130883564 -87153594 + L1PA3 LINE L1 4084 5157 -989 207 204 0 0 chr3 130884096 130884140 -87153018 + (TA)n Simple_repeat Simple_repeat 1 44 0 6305 65 1 0 chr3 130884164 130884960 -87152198 - L1PA6 LINE L1 -6 6148 5352 18284 44 1 4 chr3 130885105 130888187 -87148971 - L1PA4 LINE L1 -3 6152 3075 30 59 0 0 chr3 130888919 130888970 -87148188 + AT_rich Low_complexity Low_complexity 1 51 0 189 0 0 0 chr3 130889454 130889475 -87147683 + (C)n Simple_repeat Simple_repeat 1 21 0 180 0 0 0 chr3 130889511 130889531 -87147627 + (A)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr3 130889531 130889553 -87147605 + GC_rich Low_complexity Low_complexity 1 22 0 231 299 0 23 chr3 130890801 130890888 -87146270 + (CA)n Simple_repeat Simple_repeat 2 86 0 21 36 0 0 chr3 130891072 130891100 -87146058 + AT_rich Low_complexity Low_complexity 1 28 0 7194 114 27 0 chr3 130891201 130892367 -87144791 + L1M1 LINE L1 2479 3675 -3890 2507 199 23 9 chr3 130892479 130893590 -87143568 - L1M4 LINE L1 -3473 2909 1681 18839 54 1 1 chr3 130893691 130896207 -87140951 - L1P LINE L1 -3000 3146 632 5302 214 22 49 chr3 130896212 130897657 -87139501 - L1 LINE L1 -785 6780 5375 2309 64 4 4 chr3 130897657 130897938 -87139220 - AluY SINE Alu -10 301 21 12283 68 7 0 chr3 130898548 130900171 -87136987 - HERVK9 LTR ERVK -571 5345 3711 2093 49 0 0 chr3 130900171 130900438 -87136720 - HERVK9 LTR ERVK -3130 2786 2520 9260 199 53 21 chr3 130900538 130902512 -87134646 - L1 LINE L1 -5513 2052 16 4160 234 153 21 chr3 130902515 130904594 -87132564 - L1M4 LINE L1 -815 5567 3214 33965 99 11 9 chr3 130904698 130909882 -87127276 - L1P LINE L1 -942 5204 11 32 57 0 0 chr3 130910993 130911046 -87126112 + AT_rich Low_complexity Low_complexity 1 53 0 5331 128 59 11 chr3 130911046 130911352 -87125806 - L1MA1 LINE L1 -9 6293 6003 2047 122 141 13 chr3 130911352 130911729 -87125429 - MSTA LTR MaLR -1 427 3 5331 128 59 11 chr3 130911729 130912411 -87124747 - L1MA1 LINE L1 -299 6003 5258 7400 182 31 38 chr3 130912527 130912860 -87124298 - L1M4 LINE L1 -4625 1759 1425 1540 186 0 66 chr3 130912860 130913177 -87123981 - AluJo SINE Alu -6 306 11 7400 182 31 38 chr3 130913177 130914595 -87122563 - L1M4 LINE L1 -4959 1425 20 942 193 70 48 chr3 130914585 130914943 -87122215 - L1M3c LINE L1 -4841 1300 935 * 11998 176 20 19 chr3 130914937 130915179 -87121979 - L1PA13 LINE L1 -4333 2464 2224 1780 129 182 35 chr3 130915179 130915346 -87121812 + MSTA LTR MaLR 1 142 -286 2091 120 3 10 chr3 130915346 130915637 -87121521 + AluSx SINE Alu 1 289 -23 1780 129 182 35 chr3 130915637 130915842 -87121316 + MSTA LTR MaLR 142 428 0 11998 176 20 19 chr3 130915842 130918050 -87119108 - L1PA13 LINE L1 -4573 2224 2 1990 251 56 27 chr3 130918344 130918938 -87118220 + L1M2b LINE L1 46 656 -6553 * 4233 233 41 51 chr3 130918932 130920183 -87116975 + L1M2b LINE L1 1297 2534 -4675 1383 146 8 52 chr3 130920183 130920450 -87116708 + L1PB4 LINE L1 5902 6156 0 4233 233 41 51 chr3 130920450 130920591 -87116567 + L1M2b LINE L1 2534 2675 -4534 482 293 62 67 chr3 130920689 130920914 -87116244 + MIR SINE MIR 13 236 -26 765 217 131 27 chr3 130921346 130921567 -87115591 - MIR SINE MIR 0 262 19 6392 75 8 2 chr3 130921602 130922517 -87114641 - L1PA8 LINE L1 -1100 5046 4127 6961 46 20 0 chr3 130922517 130923599 -87113559 + L1PA8 LINE L1 5060 6159 -13 25 65 0 0 chr3 130924871 130924917 -87112241 + AT_rich Low_complexity Low_complexity 1 46 0 1294 192 4 13 chr3 130925100 130925334 -87111824 - AluJo SINE Alu -18 294 63 266 340 163 0 chr3 130925399 130925540 -87111618 + MIR3 SINE MIR 34 197 -11 323 292 212 0 chr3 130926298 130926435 -87110723 + MIR3 SINE MIR 19 184 -24 21 89 0 0 chr3 130927794 130927850 -87109308 + AT_rich Low_complexity Low_complexity 1 56 0 715 206 0 0 chr3 130928262 130928388 -87108770 + FLAM_C SINE Alu 1 126 -7 30 0 0 0 chr3 130928388 130928418 -87108740 + AT_rich Low_complexity Low_complexity 1 30 0 1370 149 165 11 chr3 130928418 130928679 -87108479 + AluJo SINE Alu 2 302 0 583 189 88 0 chr3 130928679 130928827 -87108331 + L1MC2 LINE L1 6182 6342 -2 224 336 129 92 chr3 130929360 130929644 -87107514 - L2 LINE L2 0 3272 2967 774 181 0 0 chr3 130929644 130929771 -87107387 + FLAM_C SINE Alu 1 127 -6 224 336 129 92 chr3 130929771 130929897 -87107261 - L2 LINE L2 -305 2967 2847 30 45 0 0 chr3 130930003 130930047 -87107111 + AT_rich Low_complexity Low_complexity 1 44 0 22 56 0 0 chr3 130930276 130930312 -87106846 + AT_rich Low_complexity Low_complexity 1 36 0 2603 162 2 0 chr3 130930399 130930813 -87106345 - MSTB LTR MaLR -11 415 1 21 0 0 0 chr3 130931112 130931133 -87106025 + AT_rich Low_complexity Low_complexity 1 21 0 853 187 33 11 chr3 130931489 130931671 -87105487 - L1PB4 LINE L1 -159 5997 5812 * 35707 88 9 7 chr3 130931666 130937797 -87099361 - L1PA6 LINE L1 -1 6153 11 2242 149 41 2 chr3 130937988 130938033 -87099125 - L1PB4 LINE L1 -319 5837 5795 342 0 0 0 chr3 130938033 130938071 -87099087 + (TA)n Simple_repeat Simple_repeat 2 39 0 2242 149 41 2 chr3 130938071 130938460 -87098698 - L1PB4 LINE L1 -361 5795 5386 1032 94 0 0 chr3 130988478 130988631 -87048527 + AluSg/x SINE Alu 155 307 0 1781 152 14 27 chr3 130988962 130989259 -87047899 + AluJo SINE Alu 1 293 -19 1453 237 58 43 chr3 130989265 130989797 -87047361 - L1M4c LINE L1 -4771 1613 1074 350 173 87 67 chr3 130989799 130989903 -87047255 + AluSc SINE Alu 3 108 -191 22 35 0 0 chr3 130989918 130989947 -87047211 + AT_rich Low_complexity Low_complexity 1 29 0 2357 100 3 7 chr3 130990530 130990839 -87046319 + AluSp SINE Alu 5 312 -1 456 68 0 0 chr3 130991463 130991522 -87045636 + AluSp/q SINE Alu 241 299 -14 1256 180 9 0 chr3 130991531 130991742 -87045416 + AluSg/x SINE Alu 83 295 -15 2642 187 47 9 chr3 130991743 130992279 -87044879 + Tigger2 DNA MER2_type 260 815 -1903 626 229 157 0 chr3 130993538 130993691 -87043467 + MER5B DNA MER1_type 2 178 0 290 197 0 47 chr3 130995655 130995782 -87041376 + CT-rich Low_complexity Low_complexity 1 121 0 3349 201 101 78 chr3 130995991 130996546 -87040612 + L1MC4 LINE L1 6461 7002 -1040 885 129 0 23 chr3 130996546 130996678 -87040480 + FLAM_C SINE Alu 1 129 -4 3349 201 101 78 chr3 130996678 130997363 -87039795 + L1MC4 LINE L1 7002 7729 -313 241 220 0 0 chr3 130997382 130997441 -87039717 + L1MC4 LINE L1 7982 8040 -2 562 262 180 35 chr3 130997751 130998178 -87038980 - L1MC4a LINE L1 -1910 5898 5410 1033 162 210 7 chr3 130998178 130998449 -87038709 - LTR52 LTR ERVL -95 326 1 232 284 78 29 chr3 130998982 130999186 -87037972 - L1MC4a LINE L1 -1073 5073 4860 216 0 0 0 chr3 130999347 130999371 -87037787 + (TG)n Simple_repeat Simple_repeat 1 24 0 2107 96 7 3 chr3 130999372 130999654 -87037504 - AluSq SINE Alu -30 283 1 3126 173 38 15 chr3 130999758 131000173 -87036985 - Tigger6a DNA MER2_type -970 627 192 2505 180 30 20 chr3 131000173 131000673 -87036485 - MLT1D LTR MaLR 0 505 1 3126 173 38 15 chr3 131000673 131000870 -87036288 - Tigger6a DNA MER2_type -1405 192 1 205 29 29 29 chr3 131002509 131002544 -87034614 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1987 124 0 36 chr3 131004834 131005140 -87032018 + AluSx SINE Alu 1 295 -17 467 272 128 0 chr3 131005410 131005535 -87031623 + Charlie1b DNA MER1_type 7 147 -376 240 258 30 0 chr3 131005540 131005606 -87031552 - MER81 DNA DNA -32 82 15 1624 183 52 13 chr3 131005609 131005997 -87031161 + Charlie1b DNA MER1_type 121 523 0 740 165 0 0 chr3 131007070 131007191 -87029967 + FLAM_A SINE Alu 20 140 -2 1881 270 98 29 chr3 131007286 131008079 -87029079 + L1ME3A LINE L1 5280 6127 -43 206 54 0 54 chr3 131008110 131008147 -87029011 + (CAAAAA)n Simple_repeat Simple_repeat 5 39 0 1782 171 3 16 chr3 131009192 131009496 -87027662 - AluJo SINE Alu -12 300 1 1716 155 0 21 chr3 131010298 131010588 -87026570 - AluJb SINE Alu -17 295 12 1786 255 94 22 chr3 131011231 131012112 -87025046 - L1ME2 LINE L1 -11 6153 5191 14921 150 26 34 chr3 131012119 131012816 -87024342 - L1MA3 LINE L1 0 7724 7023 216 0 0 0 chr3 131012816 131012840 -87024318 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2107 108 7 0 chr3 131012840 131013119 -87024039 - AluSg SINE Alu -29 281 1 14921 150 26 34 chr3 131013119 131015544 -87021614 - L1MA3 LINE L1 -700 7024 4645 2102 136 0 0 chr3 131015544 131015839 -87021319 + AluSx SINE Alu 1 295 -17 14921 150 26 34 chr3 131015839 131017135 -87020023 - L1MA3 LINE L1 -3079 4645 3340 1995 124 31 3 chr3 131017135 131017426 -87019732 - AluSx SINE Alu -13 299 1 5068 106 80 16 chr3 131017426 131018319 -87018839 - L1MA3 LINE L1 -4321 3244 2294 2160 102 7 10 chr3 131018319 131018623 -87018535 - AluSc SINE Alu -1 308 6 699 258 0 32 chr3 131018658 131018848 -87018310 + L1ME1 LINE L1 5978 6161 -5 7804 37 0 0 chr3 131018975 131020694 -87016464 + L1PA3 LINE L1 4436 6152 -3 207 0 0 0 chr3 131020697 131020720 -87016438 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 614 174 98 23 chr3 131020749 131020881 -87016277 + MIR SINE MIR 48 189 -73 600 223 0 22 chr3 131021067 131021206 -87015952 + AluJo SINE Alu 1 136 -176 207 282 26 51 chr3 131021549 131021627 -87015531 - L2 LINE L2 -4 3268 3193 2590 61 0 0 chr3 131021668 131021979 -87015179 - AluY SINE Alu 0 311 1 282 241 0 0 chr3 131022911 131022969 -87014189 + L2 LINE L2 3215 3272 0 621 245 78 44 chr3 131023271 131023565 -87013593 + L1MC/D LINE L1 5323 5626 -2182 2260 99 7 0 chr3 131023669 131023962 -87013196 + AluSq SINE Alu 1 295 -18 23 101 0 0 chr3 131024013 131024092 -87013066 + AT_rich Low_complexity Low_complexity 1 79 0 34 42 0 0 chr3 131025576 131025624 -87011534 + AT_rich Low_complexity Low_complexity 1 48 0 2288 99 3 0 chr3 131025636 131025929 -87011229 + AluSp SINE Alu 2 295 -18 491 141 152 0 chr3 131026200 131026292 -87010866 + FRAM SINE Alu 58 163 -13 21 36 0 0 chr3 131026439 131026467 -87010691 + AT_rich Low_complexity Low_complexity 1 28 0 1056 189 52 108 chr3 131026471 131026626 -87010532 - AluJo SINE Alu -12 290 159 200 35 35 0 chr3 131026626 131026655 -87010503 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 1056 189 52 108 chr3 131026655 131026805 -87010353 - AluJo SINE Alu -143 159 2 224 311 0 0 chr3 131027105 131027150 -87010008 + L2 LINE L2 3205 3249 -23 2373 90 3 7 chr3 131027217 131027527 -87009631 - AluSp SINE Alu 0 313 5 2218 115 0 3 chr3 131027825 131028121 -87009037 + AluSx SINE Alu 1 295 -17 21 71 0 0 chr3 131028156 131028198 -87008960 + AT_rich Low_complexity Low_complexity 1 42 0 2359 75 0 3 chr3 131029091 131029383 -87007775 + AluSg1 SINE Alu 2 292 -17 2314 81 0 16 chr3 131029692 131030002 -87007156 - AluY SINE Alu -6 305 1 1209 139 57 0 chr3 131030280 131030524 -87006634 - AluSp SINE Alu -18 295 38 1398 178 30 7 chr3 131031062 131031331 -87005827 + MER58B DNA MER1_type 34 308 -33 265 312 76 13 chr3 131031359 131031516 -87005642 - L2 LINE L2 -1516 1798 1632 762 154 8 15 chr3 131032615 131032745 -87004413 - MER33 DNA MER1_type -195 129 1 467 302 37 33 chr3 131032968 131033183 -87003975 - MARNA DNA Mariner -350 236 21 273 75 0 0 chr3 131034223 131034263 -87002895 + (A)n Simple_repeat Simple_repeat 1 40 0 1181 163 31 0 chr3 131034333 131034529 -87002629 + AluSg/x SINE Alu 87 288 -24 21 0 0 0 chr3 131034529 131034550 -87002608 + AT_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chr3 131034806 131034851 -87002307 + AT_rich Low_complexity Low_complexity 1 45 0 636 268 18 41 chr3 131034865 131035068 -87002090 + MIR3 SINE MIR 1 202 -6 312 286 71 0 chr3 131035859 131035943 -87001215 - L2 LINE L2 -1 3271 3182 212 307 93 67 chr3 131035986 131036136 -87001022 - MIR SINE MIR -48 214 61 286 309 55 36 chr3 131036349 131036459 -87000699 - L2 LINE L2 -46 3226 3115 206 367 61 30 chr3 131036988 131037429 -86999729 - L2 LINE L2 -965 2349 1895 276 111 0 0 chr3 131037872 131037917 -86999241 + (A)n Simple_repeat Simple_repeat 1 45 0 1438 126 27 14 chr3 131037982 131038205 -86998953 + AluSg/x SINE Alu 85 310 0 204 279 0 16 chr3 131038986 131039047 -86998111 - MIR3 SINE MIR -31 177 118 412 279 255 14 chr3 131039055 131039263 -86997895 + MIR SINE MIR 5 262 0 305 261 113 103 chr3 131039279 131039474 -86997684 - L2 LINE L2 -6 3266 3070 181 311 90 41 chr3 131039836 131039958 -86997200 - L2 LINE L2 -458 2856 2729 246 348 99 11 chr3 131040008 131040189 -86996969 - L2 LINE L2 -738 2576 2380 204 353 78 10 chr3 131040203 131040305 -86996853 - MIR3 SINE MIR -86 122 14 365 304 11 60 chr3 131040309 131040493 -86996665 - MER5B DNA MER1_type -3 175 1 2117 108 11 0 chr3 131041623 131041949 -86995209 - AluSx SINE Alu 0 329 1 2328 144 15 5 chr3 131042101 131042496 -86994662 + L1MB7 LINE L1 5786 6184 0 216 0 0 0 chr3 131042605 131042629 -86994529 + (TAAAAA)n Simple_repeat Simple_repeat 1 24 0 1882 134 4 7 chr3 131042631 131042908 -86994250 - AluSx SINE Alu -36 276 1 240 86 0 0 chr3 131043026 131043061 -86994097 + (GA)n Simple_repeat Simple_repeat 2 36 0 22 70 0 0 chr3 131046185 131046228 -86990930 + AT_rich Low_complexity Low_complexity 1 43 0 762 160 115 0 chr3 131046482 131046638 -86990520 - MER20 DNA MER1_type -3 216 43 611 213 161 19 chr3 131048714 131048869 -86988289 + MER5B DNA MER1_type 2 178 0 774 165 0 0 chr3 131050605 131050726 -86986432 + FLAM_A SINE Alu 5 125 -8 230 208 69 14 chr3 131050945 131051017 -86986141 - L1MEd LINE L1 -2638 3491 3416 643 278 176 30 chr3 131051104 131051468 -86985690 - L1MEd LINE L1 -2734 3395 3085 2007 125 34 0 chr3 131051468 131051764 -86985394 + AluSx SINE Alu 1 306 -6 643 278 176 30 chr3 131051764 131051833 -86985325 - L1MEd LINE L1 -3044 3085 3027 225 0 0 0 chr3 131051833 131051858 -86985300 + (CA)n Simple_repeat Simple_repeat 2 26 0 857 135 0 8 chr3 131051858 131051991 -86985167 - FLAM_C SINE Alu -1 132 1 643 278 176 30 chr3 131051991 131052597 -86984561 - L1MEd LINE L1 -3101 3028 2202 216 0 0 0 chr3 131052620 131052644 -86984514 + (T)n Simple_repeat Simple_repeat 1 24 0 416 340 66 25 chr3 131052800 131052997 -86984161 - L1MEd LINE L1 -5326 793 589 349 193 23 11 chr3 131053600 131053688 -86983470 + MER103 DNA DNA 2 90 -76 1653 128 57 4 chr3 131053690 131053971 -86983187 - Tigger4(Zombi) DNA MER2_type -1 2730 2435 1160 158 0 0 chr3 131053969 131054159 -86982999 - Tigger4(Zombi) DNA MER2_type -2512 219 30 * 279 0 0 0 chr3 131054734 131054765 -86982393 + (TG)n Simple_repeat Simple_repeat 2 32 0 211 213 0 0 chr3 131054929 131054976 -86982182 + L2 LINE L2 3265 3311 -2 519 161 9 33 chr3 131055120 131055245 -86981913 - L1HS LINE L1 -198 5957 5845 1968 142 12 121 chr3 131055829 131056343 -86980815 + L1MA7 LINE L1 5827 6284 -7 302 155 0 5 chr3 131056343 131056441 -86980717 - MER53 DNA DNA -43 146 1 215 284 45 0 chr3 131056954 131057021 -86980137 + L3 LINE CR1 1505 1574 -3 1956 169 7 0 chr3 131057200 131057502 -86979656 + AluJb SINE Alu 1 304 -8 1767 190 7 7 chr3 131057522 131057832 -86979326 + AluJo SINE Alu 1 310 -2 503 181 53 23 chr3 131058531 131058611 -86978547 + Charlie5 DNA MER1_type 1 88 -2536 1606 173 14 27 chr3 131058611 131058906 -86978252 - AluJb SINE Alu -18 294 4 503 181 53 23 chr3 131058906 131058958 -86978200 + Charlie5 DNA MER1_type 88 137 -2487 * 903 159 51 5 chr3 131058955 131059150 -86978008 + Charlie5 DNA MER1_type 2246 2449 -163 1824 112 94 0 chr3 131059273 131059540 -86977618 + AluSx SINE Alu 1 292 -20 21 36 0 0 chr3 131059586 131059614 -86977544 + AT_rich Low_complexity Low_complexity 1 28 0 1402 116 0 5 chr3 131059731 131059921 -86977237 + AluSg/x SINE Alu 110 298 -14 252 0 0 0 chr3 131059932 131059960 -86977198 + (CA)n Simple_repeat Simple_repeat 2 29 0 25 0 0 0 chr3 131060123 131060148 -86977010 + AT_rich Low_complexity Low_complexity 1 25 0 1623 115 0 5 chr3 131060155 131060393 -86976765 + AluSg/x SINE Alu 66 302 0 450 222 59 30 chr3 131060489 131060624 -86976534 + FLAM_C SINE Alu 5 143 0 1830 162 7 7 chr3 131060799 131061095 -86976063 - AluSx SINE Alu -16 296 1 269 180 33 148 chr3 131061152 131061274 -86975884 + MLT1H LTR MaLR 199 306 -243 2403 97 0 7 chr3 131061379 131061688 -86975470 - AluSc SINE Alu -2 307 1 3538 133 4 4 chr3 131061973 131062498 -86974660 + MER1A DNA MER1_type 3 527 0 302 128 21 0 chr3 131062549 131062596 -86974562 - FLAM SINE Alu -10 123 76 2895 186 70 89 chr3 131062596 131062844 -86974314 - L1M3 LINE L1 -568 5615 5364 2051 63 4 12 chr3 131062844 131063097 -86974061 - AluSp SINE Alu 0 313 63 2895 186 70 89 chr3 131063097 131063222 -86973936 - L1M3 LINE L1 -819 5364 5238 2125 121 13 10 chr3 131063222 131063527 -86973631 - AluSq SINE Alu -7 306 1 2895 186 70 89 chr3 131063527 131064179 -86972979 - L1M3 LINE L1 -945 5238 4575 2354 84 0 16 chr3 131064179 131064489 -86972669 + AluSq SINE Alu 1 305 -8 2895 186 70 89 chr3 131064489 131064517 -86972641 - L1M3 LINE L1 -1608 4575 4548 527 105 0 0 chr3 131064517 131064593 -86972565 + AluSg SINE Alu 1 76 -234 2182 107 0 13 chr3 131064594 131064903 -86972255 + AluSq SINE Alu 1 305 -8 1503 92 8 88 chr3 131064909 131065176 -86971982 + AluSg SINE Alu 66 313 0 2895 186 70 89 chr3 131065176 131065384 -86971774 - L1M3 LINE L1 -1640 4543 4313 181 222 63 16 chr3 131066104 131066167 -86970991 + MIR SINE MIR 77 142 -120 410 206 200 18 chr3 131066444 131066609 -86970549 + L1MDa LINE L1 1874 2068 -4472 347 231 19 46 chr3 131066729 131066837 -86970321 - L1MD2 LINE L1 -14 6345 6241 234 200 0 0 chr3 131066837 131066887 -86970271 + Charlie1 DNA MER1_type 98 147 -2614 2448 167 92 33 chr3 131066889 131067060 -86970098 + Charlie1 DNA MER1_type 2082 2242 -519 2389 102 0 0 chr3 131067060 131067363 -86969795 + AluSx SINE Alu 1 303 -9 2448 167 92 33 chr3 131067363 131067825 -86969333 + Charlie1 DNA MER1_type 2242 2752 -9 303 260 67 19 chr3 131067961 131068065 -86969093 - MIR SINE MIR -35 227 119 332 302 24 16 chr3 131068299 131068425 -86968733 - L2 LINE L2 -3 3310 3184 21 0 0 0 chr3 131069205 131069226 -86967932 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr3 131069665 131069690 -86967468 + (A)n Simple_repeat Simple_repeat 1 25 0 2129 130 3 3 chr3 131070698 131070999 -86966159 + AluSx SINE Alu 2 302 -10 3652 164 10 29 chr3 131071292 131071669 -86965489 + MER21B LTR ERV1 129 489 -374 1738 169 7 7 chr3 131071669 131071964 -86965194 + AluJo SINE Alu 3 297 -15 3652 164 10 29 chr3 131071964 131072268 -86964890 + MER21B LTR ERV1 489 797 -66 2366 76 0 3 chr3 131072284 131072586 -86964572 - AluSg SINE Alu -9 301 1 290 287 40 30 chr3 131072595 131072730 -86964428 - MIR SINE MIR -67 141 5 857 200 24 0 chr3 131073356 131073526 -86963632 + AluJo SINE Alu 75 248 -64 680 154 0 65 chr3 131073530 131073692 -86963466 + AluJb SINE Alu 168 321 0 2250 132 0 0 chr3 131073778 131074082 -86963076 + AluSx SINE Alu 1 304 -8 1767 190 7 7 chr3 131074102 131074412 -86962746 + AluJo SINE Alu 1 310 -2 384 218 11 0 chr3 131075104 131075191 -86961967 + MER3 DNA MER1_type 41 128 -81 1577 167 14 28 chr3 131075191 131075478 -86961680 - AluJb SINE Alu -18 294 12 1626 255 94 22 chr3 131076120 131077001 -86960157 - L1ME2 LINE L1 -11 6153 5191 13945 151 25 33 chr3 131077008 131077705 -86959453 - L1MA3 LINE L1 0 7724 7023 216 0 0 0 chr3 131077705 131077729 -86959429 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2115 108 7 0 chr3 131077729 131078008 -86959150 - AluSg SINE Alu -29 281 1 13945 151 25 33 chr3 131078008 131080432 -86956726 - L1MA3 LINE L1 -700 7024 4646 2125 136 0 0 chr3 131080432 131080727 -86956431 + AluSx SINE Alu 1 295 -17 13945 151 25 33 chr3 131080727 131082024 -86955134 - L1MA3 LINE L1 -3078 4646 3340 1995 127 31 3 chr3 131082024 131082315 -86954843 - AluSx SINE Alu -13 299 1 4793 106 81 15 chr3 131082315 131083208 -86953950 - L1MA3 LINE L1 -4320 3245 2294 2177 102 7 10 chr3 131083208 131083512 -86953646 - AluSc SINE Alu -1 308 6 624 251 0 37 chr3 131083547 131083738 -86953420 + L1ME1 LINE L1 5978 6161 -5 21 0 0 0 chr3 131084104 131084125 -86953033 + AT_rich Low_complexity Low_complexity 1 21 0 717 281 55 0 chr3 131084891 131085090 -86952068 + MIR SINE MIR 42 251 -11 1737 60 0 0 chr3 131085223 131085441 -86951717 - L1PA5 LINE L1 -1 6153 5936 12225 97 11 2 chr3 131085441 131087272 -86949886 - L1P LINE L1 -4296 1850 2 180 250 0 0 chr3 131087293 131087357 -86949801 + T-rich Low_complexity Low_complexity 1 64 0 38271 38 2 2 chr3 131087540 131093245 -86943913 + L1PA3 LINE L1 445 6152 -3 207 0 0 0 chr3 131093248 131093271 -86943887 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 609 174 98 23 chr3 131093300 131093432 -86943726 + MIR SINE MIR 48 189 -73 607 222 0 0 chr3 131093618 131093735 -86943423 + FLAM_C SINE Alu 1 117 -16 203 282 26 51 chr3 131094100 131094178 -86942980 - L2 LINE L2 -4 3268 3193 2585 62 0 0 chr3 131094219 131094528 -86942630 - AluY SINE Alu -2 309 1 281 241 0 0 chr3 131095460 131095518 -86941640 + L2 LINE L2 3215 3272 0 554 251 82 29 chr3 131095835 131096114 -86941044 + L1MC4a LINE L1 5333 5626 -2182 2261 117 0 0 chr3 131096218 131096525 -86940633 + AluSc SINE Alu 1 307 -2 363 184 64 0 chr3 131096527 131096636 -86940522 + L1MC4a LINE L1 5870 5985 -1823 1154 169 52 30 chr3 131096814 131097045 -86940113 + MER46A DNA MER2_type 1 236 0 346 339 12 33 chr3 131097068 131097313 -86939845 + L1MEc LINE L1 81 320 -6076 301 349 56 28 chr3 131097596 131097811 -86939347 + L1MEc LINE L1 579 799 -5597 3098 188 82 16 chr3 131097903 131097940 -86939218 + Charlie5 DNA MER1_type 1012 1045 -1579 2064 140 39 22 chr3 131097940 131098298 -86938860 + THE1B LTR MaLR 1 364 0 3098 188 82 16 chr3 131098298 131099090 -86938068 + Charlie5 DNA MER1_type 1045 1896 -728 755 136 0 53 chr3 131099091 131099223 -86937935 + FLAM_C SINE Alu 1 125 -18 1539 160 50 50 chr3 131099242 131099417 -86937741 + Charlie5 DNA MER1_type 1891 2065 -559 1710 145 111 0 chr3 131099417 131099741 -86937417 + MER46B DNA MER2_type 2 236 0 1539 160 50 50 chr3 131099741 131099921 -86937237 + Charlie5 DNA MER1_type 2065 2249 -375 1975 151 0 16 chr3 131099921 131100233 -86936925 - AluJo SINE Alu 0 312 6 1539 160 50 50 chr3 131100233 131100312 -86936846 + Charlie5 DNA MER1_type 2248 2326 -298 4044 122 63 72 chr3 131100312 131101168 -86935990 + Tigger1 DNA MER2_type 1 848 -1570 418 76 30 0 chr3 131101174 131101240 -86935918 + Alu SINE Alu 243 310 0 2420 77 3 0 chr3 131101255 131101554 -86935604 + AluSp SINE Alu 1 300 -13 301 317 75 53 chr3 131101918 131102145 -86935013 - L2 LINE L2 -1220 2094 1863 1800 161 30 3 chr3 131102605 131102903 -86934255 + AluJo SINE Alu 1 306 -6 1576 93 9 9 chr3 131103836 131104051 -86933107 + AluSg/x SINE Alu 85 299 -11 22 0 0 0 chr3 131104681 131104703 -86932455 + AT_rich Low_complexity Low_complexity 1 22 0 1601 95 193 0 chr3 131104870 131105135 -86932023 + AluSx SINE Alu 2 312 0 526 252 56 135 chr3 131105345 131105474 -86931684 - MIR SINE MIR -16 246 147 1762 140 0 78 chr3 131105474 131105781 -86931377 - AluJb SINE Alu -29 283 1 526 252 56 135 chr3 131105781 131105917 -86931241 - MIR SINE MIR -115 147 2 2150 94 0 55 chr3 131106306 131106641 -86930517 + AluSq SINE Alu 1 313 0 1195 133 0 0 chr3 131107788 131107954 -86929204 + AluSx SINE Alu 1 166 -146 1926 171 7 0 chr3 131108574 131108873 -86928285 - AluJb SINE Alu -11 301 1 215 284 45 0 chr3 131109052 131109119 -86928039 - L3 LINE CR1 -3 1574 1505 302 155 0 5 chr3 131109628 131109726 -86927432 + MER53 DNA DNA 1 146 -43 1968 142 12 121 chr3 131109726 131110240 -86926918 - L1MA7 LINE L1 -7 6284 5827 519 113 0 0 chr3 131110867 131110947 -86926211 + L1PA14 LINE L1 5882 5961 -200 211 213 0 0 chr3 131111091 131111138 -86926020 - L2 LINE L2 -2 3311 3265 297 0 0 0 chr3 131111302 131111335 -86925823 + (CA)n Simple_repeat Simple_repeat 2 34 0 1160 158 0 0 chr3 131111910 131112100 -86925058 + Tigger4(Zombi) DNA MER2_type 30 219 -2512 * 1653 128 57 4 chr3 131112098 131112379 -86924779 + Tigger4(Zombi) DNA MER2_type 2435 2730 -1 349 193 23 11 chr3 131112381 131112469 -86924689 - MER103 DNA DNA -76 90 2 400 342 67 26 chr3 131113075 131113268 -86923890 + L1MEd LINE L1 593 793 -5326 207 0 0 0 chr3 131113424 131113447 -86923711 + (A)n Simple_repeat Simple_repeat 1 23 0 659 279 101 33 chr3 131113470 131114076 -86923082 + L1MEd LINE L1 2202 2765 -3364 857 135 0 8 chr3 131114076 131114209 -86922949 + FLAM_C SINE Alu 1 132 -1 225 0 0 0 chr3 131114209 131114234 -86922924 + (TG)n Simple_repeat Simple_repeat 2 26 0 659 279 101 33 chr3 131114234 131114303 -86922855 + L1MEd LINE L1 2765 2828 -3301 2007 125 34 0 chr3 131114303 131114599 -86922559 - AluSx SINE Alu -6 306 1 659 279 101 33 chr3 131114599 131114963 -86922195 + L1MEd LINE L1 2828 3395 -2734 230 208 69 14 chr3 131115050 131115122 -86922036 + L1MEd LINE L1 3416 3491 -2638 774 165 0 0 chr3 131115341 131115462 -86921696 - FLAM_A SINE Alu -8 125 5 303 244 333 6 chr3 131115544 131115712 -86921446 - MIR SINE MIR 0 262 40 780 214 94 5 chr3 131116104 131116296 -86920862 + MER58A DNA MER1_type 1 209 -15 2411 84 0 3 chr3 131117085 131117382 -86919776 + AluSq SINE Alu 2 297 -16 21 0 0 0 chr3 131117973 131117994 -86919164 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr3 131118431 131118456 -86918702 + (A)n Simple_repeat Simple_repeat 1 25 0 2129 130 3 3 chr3 131119464 131119765 -86917393 + AluSx SINE Alu 2 302 -10 268 330 55 0 chr3 131120478 131120569 -86916589 + L2 LINE L2 3169 3264 -8 2021 108 7 21 chr3 131121113 131121420 -86915738 + AluSc SINE Alu 1 303 0 1885 151 30 20 chr3 131121426 131121731 -86915427 + AluSx SINE Alu 1 308 -4 306 50 0 0 chr3 131121731 131121771 -86915387 + (GA)n Simple_repeat Simple_repeat 1 40 0 264 122 0 0 chr3 131121766 131121807 -86915351 + (GAAAA)n Simple_repeat Simple_repeat 3 43 0 * 22 80 0 0 chr3 131121886 131121936 -86915222 + AT_rich Low_complexity Low_complexity 1 50 0 27 29 0 0 chr3 131122107 131122141 -86915017 + AT_rich Low_complexity Low_complexity 1 34 0 542 283 82 40 chr3 131125285 131125589 -86911569 - L2 LINE L2 0 3313 2997 1806 149 14 10 chr3 131125616 131125905 -86911253 + AluSx SINE Alu 1 290 -22 2247 113 20 0 chr3 131125915 131126216 -86910942 + AluSx SINE Alu 1 307 -5 939 257 96 11 chr3 131126255 131126621 -86910537 + L1ME LINE L1 62 458 -5612 1366 163 80 35 chr3 131126630 131126918 -86910240 + MER1B DNA MER1_type 1 301 -38 1719 167 13 39 chr3 131127482 131127788 -86909370 - AluJo SINE Alu -14 298 1 22 35 0 0 chr3 131127826 131127855 -86909303 + AT_rich Low_complexity Low_complexity 1 29 0 2340 95 0 0 chr3 131127864 131128159 -86908999 + AluSq SINE Alu 1 295 -18 23 101 0 0 chr3 131128210 131128289 -86908869 + AT_rich Low_complexity Low_complexity 1 79 0 34 42 0 0 chr3 131129775 131129823 -86907335 + AT_rich Low_complexity Low_complexity 1 48 0 2285 99 3 0 chr3 131129835 131130128 -86907030 + AluSp SINE Alu 2 295 -18 2346 77 0 19 chr3 131130406 131130717 -86906441 + AluY SINE Alu 1 305 -6 1064 253 110 58 chr3 131130898 131131496 -86905662 - L1MC4a LINE L1 -1795 6013 5385 485 116 14 159 chr3 131131498 131131636 -86905522 + L1MB8 LINE L1 5917 6034 -144 377 281 151 71 chr3 131131703 131131962 -86905196 - L1MC4a LINE L1 -825 5321 5084 2344 85 3 44 chr3 131131962 131132278 -86904880 - AluSp SINE Alu -10 303 1 377 281 151 71 chr3 131132278 131132620 -86904538 - L1MC4a LINE L1 -1062 5084 4672 2324 142 43 17 chr3 131132631 131133046 -86904112 - MSTA LTR MaLR 0 428 3 1372 125 33 8 chr3 131133049 131133289 -86903869 - MSTA-int LTR MaLR -1 1650 1405 1517 234 34 30 chr3 131133290 131133884 -86903274 - L1MC4a LINE L1 -2341 3805 3210 1800 80 0 60 chr3 131133892 131134141 -86903017 + AluSx SINE Alu 56 289 -23 1273 154 41 8 chr3 131134147 131134393 -86902765 - MER2 DNA MER2_type -90 255 2 500 224 41 0 chr3 131134397 131134544 -86902614 - L1MC4a LINE L1 -3466 2680 2528 1604 144 3 126 chr3 131134618 131135007 -86902151 - MER7A DNA MER2_type -1 345 7 1820 164 32 0 chr3 131135501 131135781 -86901377 + AluSx SINE Alu 1 289 -23 885 125 0 0 chr3 131135989 131136117 -86901041 - AluSg/x SINE Alu -4 308 181 9487 126 97 57 chr3 131136252 131136696 -86900462 + Tigger2 DNA MER2_type 441 866 -1852 1625 179 3 25 chr3 131136696 131136830 -86900328 + AluJb SINE Alu 2 137 -175 2298 96 0 0 chr3 131136830 131137121 -86900037 + AluSx SINE Alu 1 291 -21 1625 179 3 25 chr3 131137121 131137271 -86899887 + AluJb SINE Alu 137 280 -32 9487 126 97 57 chr3 131137271 131137299 -86899859 + Tigger2 DNA MER2_type 866 891 -1827 270 95 0 0 chr3 131137299 131137341 -86899817 + (CA)n Simple_repeat Simple_repeat 1 42 0 9487 126 97 57 chr3 131137341 131138821 -86898337 + Tigger2 DNA MER2_type 891 2471 -247 2395 82 0 0 chr3 131138821 131139124 -86898034 - AluY SINE Alu 0 311 9 406 208 52 0 chr3 131139124 131139220 -86897938 + Tigger2 DNA MER2_type 2617 2717 -1 297 0 0 0 chr3 131139221 131139254 -86897904 + (TG)n Simple_repeat Simple_repeat 2 34 0 856 238 45 56 chr3 131139299 131139677 -86897481 - L1ME2 LINE L1 -2 6162 5789 21 0 0 0 chr3 131139813 131139834 -86897324 + AT_rich Low_complexity Low_complexity 1 21 0 21 107 0 0 chr3 131140318 131140402 -86896756 + AT_rich Low_complexity Low_complexity 1 84 0 1860 169 3 10 chr3 131140447 131140761 -86896397 - AluJb SINE Alu 0 312 1 1764 161 7 14 chr3 131140873 131141164 -86895994 + AluJo SINE Alu 1 289 -23 684 214 17 56 chr3 131141447 131141580 -86895578 + MER5B DNA MER1_type 7 133 -45 2856 7 0 0 chr3 131141580 131141889 -86895269 + AluYb8 SINE Alu 1 309 -9 684 214 17 56 chr3 131141889 131141933 -86895225 + MER5B DNA MER1_type 133 177 -1 2160 101 0 4 chr3 131142303 131142579 -86894579 + AluSx SINE Alu 1 275 -37 534 200 10 0 chr3 131142636 131142736 -86894422 - Tigger7 DNA MER2_type -1 2586 2486 610 143 71 0 chr3 131142800 131142898 -86894260 - Tigger7 DNA MER2_type -1 2486 2382 700 193 290 0 chr3 131142913 131143089 -86894069 - Tigger7 DNA MER2_type -2259 228 2 21 0 0 0 chr3 131143194 131143215 -86893943 + AT_rich Low_complexity Low_complexity 1 21 0 702 236 68 0 chr3 131143385 131143533 -86893625 + MER58A DNA MER1_type 1 158 0 2093 106 0 0 chr3 131143646 131143919 -86893239 - AluSx SINE Alu -39 273 1 2497 52 0 7 chr3 131144473 131144779 -86892379 - AluY SINE Alu -6 305 2 234 0 0 0 chr3 131144788 131144814 -86892344 + (TA)n Simple_repeat Simple_repeat 2 27 0 2951 193 59 5 chr3 131145578 131146175 -86890983 - MER82 DNA MER2_type -2 651 23 1463 231 84 64 chr3 131146212 131146709 -86890449 - MLT1J LTR MaLR 0 511 5 500 184 58 0 chr3 131147908 131148091 -86889067 - L1MA7 LINE L1 -11 6280 5981 * 3324 251 37 45 chr3 131148071 131148851 -86888307 - L1M3b LINE L1 -4743 1538 897 941 201 25 0 chr3 131148851 131149010 -86888148 + FRAM SINE Alu 4 166 0 3324 251 37 45 chr3 131149010 131149801 -86887357 - L1M3b LINE L1 -5384 897 101 2071 136 3 7 chr3 131149834 131150129 -86887029 - AluSq SINE Alu -19 294 1 2274 106 7 0 chr3 131150131 131150433 -86886725 - AluSq SINE Alu -8 305 2 393 274 47 0 chr3 131150433 131150539 -86886619 - L1M3b LINE L1 -6166 115 5 2480 72 0 0 chr3 131150548 131150854 -86886304 - AluSc SINE Alu -3 306 1 1319 229 36 97 chr3 131151413 131151989 -86885169 - MER34 LTR ERV1 0 542 2 2153 126 7 7 chr3 131152367 131152676 -86884482 - AluSx SINE Alu -1 311 3 2165 108 0 38 chr3 131152756 131152927 -86884231 - AluSc SINE Alu -7 302 147 2435 73 3 0 chr3 131152927 131153230 -86883928 - AluY SINE Alu -7 304 1 2165 108 0 38 chr3 131153230 131153372 -86883786 - AluSc SINE Alu -162 147 1 2456 61 3 10 chr3 131153567 131153877 -86883281 - AluY SINE Alu -1 310 3 24 0 0 0 chr3 131154848 131154872 -86882286 + AT_rich Low_complexity Low_complexity 1 24 0 709 273 36 6 chr3 131155614 131155779 -86881379 + MIR SINE MIR 5 174 -88 1189 219 0 30 chr3 131156059 131156324 -86880834 + AluJo SINE Alu 44 300 -12 2256 121 3 0 chr3 131156427 131156732 -86880426 - AluSx SINE Alu -6 306 1 1640 244 124 53 chr3 131156942 131157675 -86879483 - L1MC4a LINE L1 -1639 6169 5385 538 116 14 159 chr3 131157677 131157815 -86879343 + L1MB8 LINE L1 5917 6034 -144 222 0 51 26 chr3 131157876 131157915 -86879243 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 2339 85 3 44 chr3 131158135 131158451 -86878707 - AluSp SINE Alu -10 303 1 2516 142 43 17 chr3 131158804 131159219 -86877939 - MSTA LTR MaLR 0 428 3 1493 125 33 8 chr3 131159222 131159462 -86877696 - MSTA-int LTR MaLR -1 1650 1405 * 1761 231 35 36 chr3 131159443 131160048 -86877110 - L1MC4a LINE L1 -2323 3823 3220 1277 136 23 45 chr3 131160051 131160065 -86877093 - Tigger2 DNA MER2_type -2458 260 247 1768 95 0 57 chr3 131160065 131160327 -86876831 + AluSx SINE Alu 56 302 -10 1277 136 23 45 chr3 131160327 131160577 -86876581 - Tigger2 DNA MER2_type -2471 247 2 224 280 136 38 chr3 131161352 131161484 -86875674 - L2 LINE L2 -4 3309 3165 2088 154 52 9 chr3 131161484 131161828 -86875330 + MER47A DNA MER2_type 8 366 0 22 56 0 0 chr3 131161831 131161867 -86875291 + AT_rich Low_complexity Low_complexity 1 36 0 1174 267 120 54 chr3 131162111 131162277 -86874881 - L2 LINE L2 0 3313 3159 2154 73 44 0 chr3 131162277 131162549 -86874609 + AluSp SINE Alu 5 288 -25 1174 267 120 54 chr3 131162549 131163106 -86874052 - L2 LINE L2 -154 3159 2555 212 268 179 8 chr3 131163436 131163559 -86873599 - MIR SINE MIR -13 249 106 23 33 0 0 chr3 131163766 131163796 -86873362 + AT_rich Low_complexity Low_complexity 1 30 0 736 111 0 46 chr3 131163863 131163971 -86873187 - AluSg/x SINE Alu -22 290 188 1586 110 5 0 chr3 131163971 131164189 -86872969 - AluSq SINE Alu -94 219 1 965 260 82 48 chr3 131164620 131164878 -86872280 - L1ME LINE L1 -459 5711 5463 2099 134 0 0 chr3 131164878 131165170 -86871988 - AluSg SINE Alu -18 292 1 965 260 82 48 chr3 131165170 131165260 -86871898 - L1ME LINE L1 -707 5463 5378 1986 63 112 0 chr3 131165260 131165529 -86871629 - AluY SINE Alu -12 299 1 965 260 82 48 chr3 131165529 131165618 -86871540 - L1ME LINE L1 -792 5378 5258 1077 273 59 32 chr3 131165630 131165681 -86871477 - L1MC4a LINE L1 -2989 3157 3109 1782 171 31 0 chr3 131165681 131165973 -86871185 - AluSx SINE Alu -11 301 1 1077 273 59 32 chr3 131165973 131166511 -86870647 - L1MC4a LINE L1 -3037 3109 2539 2555 230 130 57 chr3 131166520 131166785 -86870373 + HAL1 LINE L1 1338 1582 -925 2408 91 3 0 chr3 131166785 131167092 -86870066 + AluSq SINE Alu 1 308 -5 2555 230 130 57 chr3 131167092 131167819 -86869339 + HAL1 LINE L1 1582 2402 -105 21 36 0 0 chr3 131167822 131167850 -86869308 + AT_rich Low_complexity Low_complexity 1 28 0 1875 159 7 3 chr3 131167997 131168293 -86868865 - AluJo SINE Alu -13 299 3 2212 98 53 39 chr3 131168646 131169003 -86868155 - L1PA16 LINE L1 0 6166 5805 236 167 0 48 chr3 131169962 131170004 -86867154 - L2 LINE L2 -30 3242 3203 25 0 0 0 chr3 131171399 131171424 -86865734 + AT_rich Low_complexity Low_complexity 1 25 0 430 233 68 0 chr3 131171647 131171750 -86865408 - MIR SINE MIR -57 151 42 2255 89 38 7 chr3 131172239 131172532 -86864626 - AluSx SINE Alu -10 302 1 2094 114 0 35 chr3 131173194 131173511 -86863647 + AluSx SINE Alu 1 306 -6 804 230 0 0 chr3 131173598 131173759 -86863399 + AluSg/x SINE Alu 140 300 -12 624 350 93 32 chr3 131173763 131174038 -86863120 - L2 LINE L2 -338 2976 2719 1606 110 48 100 chr3 131174038 131174347 -86862811 + AluSq SINE Alu 1 293 -20 624 350 93 32 chr3 131174347 131174596 -86862562 - L2 LINE L2 -595 2719 2420 220 228 53 0 chr3 131174676 131174733 -86862425 - MIR SINE MIR -21 241 182 220 308 123 0 chr3 131174794 131174859 -86862299 - MIR SINE MIR -156 106 34 2154 117 3 0 chr3 131175054 131175352 -86861806 + AluSx SINE Alu 1 299 -13 1892 136 35 3 chr3 131175425 131175711 -86861447 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr3 131176273 131176294 -86860864 + AT_rich Low_complexity Low_complexity 1 21 0 274 289 82 52 chr3 131178259 131178453 -86858705 - L2 LINE L2 -1 3312 3113 2319 89 3 3 chr3 131178462 131178765 -86858393 + AluSx SINE Alu 2 304 -8 383 276 134 0 chr3 131178812 131178939 -86858219 + MIR SINE MIR 2 145 -117 820 104 9 0 chr3 131178957 131179072 -86858086 + AluSg/x SINE Alu 183 298 -12 227 265 73 0 chr3 131179072 131179140 -86858018 + L1MEd LINE L1 322 394 -5725 276 326 12 0 chr3 131179226 131179312 -86857846 + L1MEd LINE L1 544 630 -5489 446 102 0 0 chr3 131179333 131179392 -86857766 - Alu SINE Alu -15 294 236 2006 124 7 7 chr3 131179393 131179683 -86857475 - LTR2B LTR ERV1 0 490 201 233 268 0 28 chr3 131179926 131179997 -86857161 + CT-rich Low_complexity Low_complexity 6 74 0 2003 152 0 0 chr3 131180030 131180326 -86856832 + AluSx SINE Alu 8 303 -9 862 144 0 0 chr3 131180474 131180592 -86856566 + FLAM_C SINE Alu 1 118 -15 24 67 0 0 chr3 131180592 131180637 -86856521 + AT_rich Low_complexity Low_complexity 1 45 0 305 229 86 0 chr3 131181443 131181513 -86855645 + MIR SINE MIR 22 97 -165 2378 71 10 0 chr3 131181513 131181810 -86855348 - AluY SINE Alu -11 300 1 2906 137 2 37 chr3 131181853 131182314 -86854844 - MER65A LTR ERV1 0 445 1 4236 175 13 29 chr3 131182405 131182872 -86854286 + MER21B LTR ERV1 39 491 -372 1723 169 7 7 chr3 131182872 131183167 -86853991 + AluJo SINE Alu 3 297 -15 4236 175 13 29 chr3 131183167 131183470 -86853688 + MER21B LTR ERV1 491 797 -66 2412 73 0 3 chr3 131183486 131183788 -86853370 - AluSg SINE Alu -9 301 1 301 363 22 15 chr3 131183797 131183932 -86853226 - MIR SINE MIR -122 140 5 232 294 0 69 chr3 131183991 131184797 -86852361 + GA-rich Low_complexity Low_complexity 2 150 0 249 242 32 75 chr3 131184039 131184128 -86853030 + (CAGAGA)n Simple_repeat Simple_repeat 3 94 -86 2281 90 0 7 chr3 131184128 131184470 -86852688 - AluY SINE Alu 0 311 1 249 242 32 75 chr3 131184470 131184480 -86852678 + (CAGAGA)n Simple_repeat Simple_repeat 94 103 -77 2544 65 0 0 chr3 131184480 131184786 -86852372 - AluY SINE Alu -5 306 1 249 242 32 75 chr3 131184786 131184871 -86852287 + (CAGAGA)n Simple_repeat Simple_repeat 103 180 0 1002 172 0 12 chr3 131184887 131185056 -86852102 - FRAM SINE Alu -10 166 1 1841 149 0 17 chr3 131185060 131185349 -86851809 - AluSx SINE Alu -19 293 10 906 204 30 0 chr3 131185407 131185574 -86851584 + FAM SINE Alu 4 175 0 327 264 36 55 chr3 131185862 131185972 -86851186 + L2 LINE L2 3158 3265 -7 * 861 191 84 100 chr3 131185944 131186092 -86851066 - L2 LINE L2 0 3313 3164 1840 161 3 7 chr3 131186092 131186390 -86850768 + AluSx SINE Alu 1 297 -15 861 191 84 100 chr3 131186390 131186550 -86850608 - L2 LINE L2 -149 3164 3010 2025 128 3 16 chr3 131186845 131187149 -86850009 + AluSx SINE Alu 1 300 -12 366 80 0 0 chr3 131187149 131187199 -86849959 + (GA)n Simple_repeat Simple_repeat 1 50 0 2465 50 7 3 chr3 131187262 131187563 -86849595 + AluY SINE Alu 1 302 -9 2351 151 12 41 chr3 131187594 131188005 -86849153 + MSTB LTR MaLR 1 399 -27 222 118 0 0 chr3 131188008 131188042 -86849116 + (TCCC)n Simple_repeat Simple_repeat 3 36 0 1050 82 6 22 chr3 131188044 131188227 -86848931 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1920 135 14 14 chr3 131188247 131188544 -86848614 - AluSx SINE Alu -15 297 1 400 175 0 0 chr3 131188544 131188624 -86848534 - AluS SINE Alu -5 305 226 1767 138 4 4 chr3 131188625 131188879 -86848279 - AluSx SINE Alu -56 256 3 1649 122 44 41 chr3 131189062 131189356 -86847802 - AluSg1 SINE Alu -13 296 2 1859 124 8 4 chr3 131189358 131189625 -86847533 - AluSx SINE Alu -12 300 33 24 0 0 0 chr3 131189643 131189667 -86847491 + AT_rich Low_complexity Low_complexity 1 24 0 233 274 0 0 chr3 131190171 131190222 -86846936 - MIR SINE MIR -61 147 97 331 213 0 27 chr3 131190410 131190485 -86846673 - LTR16A1 LTR ERVL -134 323 251 304 244 84 25 chr3 131190541 131190660 -86846498 - LTR16A1 LTR ERVL -313 144 19 1242 231 49 49 chr3 131190698 131190977 -86846181 + L1MDa LINE L1 1 282 -6258 190 0 67 0 chr3 131190977 131191007 -86846151 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1242 231 49 49 chr3 131191007 131191077 -86846081 + L1MDa LINE L1 281 350 -6190 2095 125 7 0 chr3 131191090 131191385 -86845773 - AluSx SINE Alu -15 297 1 314 179 75 0 chr3 131191388 131191455 -86845703 + MLT1A1 LTR MaLR 294 365 0 2106 99 0 11 chr3 131191769 131192076 -86845082 - AluSg SINE Alu 0 304 1 1028 47 0 23 chr3 131192097 131192225 -86844933 - AluSp SINE Alu -188 125 1 558 221 117 14 chr3 131192231 131192376 -86844782 + MER5B DNA MER1_type 3 162 -16 1730 174 40 0 chr3 131192623 131192922 -86844236 - AluJb SINE Alu -1 311 1 26 50 0 0 chr3 131193124 131193164 -86843994 + AT_rich Low_complexity Low_complexity 1 40 0 2278 106 0 3 chr3 131193359 131193661 -86843497 + AluSx SINE Alu 1 301 -11 228 265 73 0 chr3 131193661 131193729 -86843429 + L1MDa LINE L1 733 805 -5725 276 326 12 0 chr3 131193815 131193901 -86843257 + L1MDa LINE L1 955 1041 -5489 446 102 0 0 chr3 131193922 131193981 -86843177 - AluSx SINE Alu -15 296 238 3756 96 8 10 chr3 131193982 131194470 -86842688 - LTR2B LTR ERV1 0 490 4 259 0 0 0 chr3 131194470 131194498 -86842660 - LTR2B LTR ERV1 -462 28 1 1705 129 8 4 chr3 131194498 131194738 -86842420 - AluSx SINE Alu -71 241 1 31 0 0 0 chr3 131194929 131194960 -86842198 + AT_rich Low_complexity Low_complexity 1 31 0 538 219 18 0 chr3 131195151 131195265 -86841893 - MIR SINE MIR -21 241 126 1253 168 14 5 chr3 131195365 131195574 -86841584 - AluJo SINE Alu -99 213 3 1454 285 0 22 chr3 131195760 131195963 -86841195 - PRIMA41-int LTR ERV1 -5517 2239 2048 1714 164 0 4 chr3 131195963 131196231 -86840927 - AluSx SINE Alu -8 304 38 1454 285 0 22 chr3 131196231 131196431 -86840727 - PRIMA41-int LTR ERV1 -5708 2048 1845 381 223 68 7 chr3 131196431 131196579 -86840579 - LTR5 LTR ERVK 0 969 813 2873 262 30 6 chr3 131197119 131197818 -86839340 - PRIMA41-int LTR ERV1 -2337 5419 4704 * 3075 246 22 14 chr3 131197815 131198586 -86838572 - PRIMA41-int LTR ERV1 -3154 4602 3826 592 253 24 36 chr3 131199167 131199362 -86837796 + AluJo SINE Alu 123 315 0 943 157 7 7 chr3 131199370 131199517 -86837641 + FRAM SINE Alu 8 154 -22 21 36 0 0 chr3 131199521 131199549 -86837609 + AT_rich Low_complexity Low_complexity 1 28 0 1594 167 52 11 chr3 131199696 131199983 -86837175 - AluJo SINE Alu -13 299 1 1264 155 77 42 chr3 131200096 131200427 -86836731 + L1M4b LINE L1 1318 1661 -5194 1792 119 4 14 chr3 131200427 131200704 -86836454 + AluJb SINE Alu 1 274 -38 246 322 43 0 chr3 131200984 131201099 -86836059 - L2 LINE L2 -655 2659 2540 417 165 0 5 chr3 131201130 131201209 -86835949 - AluJ/FLAM SINE Alu -238 64 1 2207 119 0 3 chr3 131201578 131201880 -86835278 + AluSx SINE Alu 1 301 -11 423 56 0 0 chr3 131202045 131202099 -86835059 + (CA)n Simple_repeat Simple_repeat 1 54 0 180 0 0 0 chr3 131202098 131202118 -86835040 + (TA)n Simple_repeat Simple_repeat 2 21 0 * 2149 133 0 0 chr3 131202118 131202411 -86834747 - AluSx SINE Alu -15 297 5 1450 192 14 42 chr3 131202444 131202731 -86834427 - AluJo SINE Alu -33 279 1 430 208 57 0 chr3 131203100 131203206 -86833952 + MIR SINE MIR 108 219 -43 622 184 9 35 chr3 131203418 131203532 -86833626 + MER81 DNA DNA 1 111 -3 1267 209 59 4 chr3 131205312 131205566 -86831592 - MLT1A1 LTR MaLR -2 363 96 829 220 36 0 chr3 131205566 131205734 -86831424 - MER41D LTR ERV1 0 557 384 2292 106 0 6 chr3 131206098 131206409 -86830749 - AluSc SINE Alu 0 309 1 411 269 58 32 chr3 131206461 131206617 -86830541 - PRIMA41-int LTR ERV1 0 5946 5787 1544 322 12 12 chr3 131206816 131207325 -86829833 - PRIMA41-int LTR ERV1 -249 6873 6365 413 19 19 0 chr3 131207326 131207380 -86829778 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 954 174 0 0 chr3 131207383 131207532 -86829626 - AluSx SINE Alu -32 278 130 688 111 0 0 chr3 131207532 131207622 -86829536 - AluSx SINE Alu -217 95 6 2149 320 26 6 chr3 131207636 131208355 -86828803 - PRIMA41-int LTR ERV1 -759 6363 5630 2791 284 7 3 chr3 131208670 131209371 -86827787 - PRIMA41-int LTR ERV1 -1534 6222 5519 376 177 0 0 chr3 131209373 131209435 -86827723 + AluS SINE Alu 1 62 -241 600 238 66 22 chr3 131209592 131209773 -86827385 - PRIMA41-int LTR ERV1 -3742 4014 3826 24 0 0 0 chr3 131209818 131209842 -86827316 + AT_rich Low_complexity Low_complexity 1 24 0 1276 290 9 0 chr3 131209842 131210190 -86826968 - PRIMA41-int LTR ERV1 -3915 3841 3491 4095 284 23 24 chr3 131210194 131211229 -86825929 - PRIMA41-int LTR ERV1 -4678 3078 2044 1731 164 0 4 chr3 131211229 131211497 -86825661 - AluSx SINE Alu -8 304 38 4095 284 23 24 chr3 131211497 131211697 -86825461 - PRIMA41-int LTR ERV1 -5712 2044 1845 815 166 11 46 chr3 131211697 131211872 -86825286 - LTR5 LTR ERVK 0 969 801 245 205 0 0 chr3 131212504 131212543 -86824615 - AluSx SINE Alu -262 41 3 217 157 59 20 chr3 131213752 131213803 -86823355 - MIR SINE MIR -67 141 89 808 149 95 0 chr3 131214273 131214441 -86822717 - L1ME3A LINE L1 0 6170 5987 783 180 150 0 chr3 131214442 131214642 -86822516 - L1ME3A LINE L1 -234 5936 5707 2842 13 0 6 chr3 131214903 131215216 -86821942 + AluYb8 SINE Alu 1 311 -7 265 235 31 0 chr3 131215242 131215340 -86821818 + (TA)n Simple_repeat Simple_repeat 2 102 0 425 137 65 0 chr3 131215410 131215630 -86821528 + (TA)n Simple_repeat Simple_repeat 1 234 0 298 338 13 0 chr3 131216513 131216664 -86820494 - L1ME4a LINE L1 -205 5916 5764 317 322 50 8 chr3 131216664 131216785 -86820373 + L2 LINE L2 3147 3272 0 435 271 82 6 chr3 131217160 131217347 -86819811 - MIR SINE MIR -55 207 3 432 279 93 0 chr3 131217636 131217765 -86819393 - Charlie8 DNA MER1_type -2130 287 147 817 281 0 4 chr3 131217812 131218040 -86819118 + MIR SINE MIR 35 261 -1 360 277 50 34 chr3 131218102 131218221 -86818937 - Charlie8 DNA MER1_type -2296 121 1 1793 160 0 41 chr3 131218320 131218639 -86818519 + AluJo SINE Alu 1 306 -6 403 242 53 117 chr3 131218714 131218864 -86818294 - L1MC4 LINE L1 -16 8026 7868 282 56 0 0 chr3 131218864 131218900 -86818258 + (CA)n Simple_repeat Simple_repeat 1 36 0 403 242 53 117 chr3 131218900 131218932 -86818226 - L1MC4 LINE L1 -174 7868 7836 2095 138 0 28 chr3 131218932 131219252 -86817906 + AluSx SINE Alu 1 311 -1 403 242 53 117 chr3 131219252 131219428 -86817730 - L1MC4 LINE L1 -206 7836 7690 35 0 0 0 chr3 131219428 131219463 -86817695 + AT_rich Low_complexity Low_complexity 1 35 0 980 86 36 0 chr3 131219465 131219604 -86817554 - L1MA4 LINE L1 -6 6294 6151 1941 116 11 11 chr3 131219608 131219885 -86817273 - AluSx SINE Alu -10 302 26 282 325 117 6 chr3 131219887 131220050 -86817108 + MIR SINE MIR 82 262 0 2530 210 26 12 chr3 131220210 131220790 -86816368 - L1M4 LINE L1 -1828 4318 3731 568 160 30 0 chr3 131220800 131220900 -86816258 - U13 snRNA snRNA -1 103 1 1196 173 15 0 chr3 131220941 131221138 -86816020 + MER46B DNA MER2_type 1 75 -161 2072 128 3 7 chr3 131221370 131221666 -86815492 - AluSx SINE Alu -17 295 1 997 176 0 33 chr3 131221717 131221899 -86815259 + AluJb SINE Alu 137 312 0 1603 57 0 0 chr3 131222002 131222196 -86814962 + MER107 DNA MER1_type 4 197 0 1048 182 50 59 chr3 131223976 131224150 -86813008 + MER20 DNA MER1_type 2 175 -44 2031 78 54 34 chr3 131224150 131224445 -86812713 + AluSp SINE Alu 1 301 -12 1048 182 50 59 chr3 131224445 131224490 -86812668 + MER20 DNA MER1_type 175 219 0 240 111 0 0 chr3 131225446 131225482 -86811676 + (GAAAA)n Simple_repeat Simple_repeat 5 40 0 826 280 48 39 chr3 131226262 131226573 -86810585 + MLT1K LTR MaLR 257 570 -18 22 56 0 0 chr3 131226955 131226991 -86810167 + AT_rich Low_complexity Low_complexity 1 36 0 1197 271 63 39 chr3 131227661 131228170 -86808988 - LTR33 LTR ERVL 0 521 1 241 289 148 31 chr3 131228190 131228318 -86808840 + L2 LINE L2 3103 3245 -27 2480 83 3 0 chr3 131228322 131228624 -86808534 + AluSp SINE Alu 1 303 -10 2417 94 3 0 chr3 131228624 131228923 -86808235 + AluSp SINE Alu 1 300 -13 1589 194 60 0 chr3 131228945 131229229 -86807929 + AluJo SINE Alu 1 301 -11 298 338 13 0 chr3 131231494 131231645 -86805513 - L1ME4a LINE L1 -205 5916 5764 317 322 50 8 chr3 131231645 131231766 -86805392 + L2 LINE L2 3147 3272 0 439 269 82 7 chr3 131232141 131232328 -86804830 - MIR SINE MIR -55 207 3 432 279 93 0 chr3 131232619 131232748 -86804410 - Charlie8 DNA MER1_type -2130 287 147 817 281 0 4 chr3 131232795 131233023 -86804135 + MIR SINE MIR 35 261 -1 360 277 50 34 chr3 131233085 131233204 -86803954 - Charlie8 DNA MER1_type -2296 121 1 1810 157 0 41 chr3 131233303 131233622 -86803536 + AluJo SINE Alu 1 306 -6 445 236 53 119 chr3 131233697 131233848 -86803310 - L1MC4 LINE L1 -16 8026 7867 282 56 0 0 chr3 131233848 131233884 -86803274 + (CA)n Simple_repeat Simple_repeat 1 36 0 445 236 53 119 chr3 131233884 131233916 -86803242 - L1MC4 LINE L1 -175 7867 7834 2095 138 0 28 chr3 131233916 131234236 -86802922 + AluSx SINE Alu 1 311 -1 445 236 53 119 chr3 131234236 131234412 -86802746 - L1MC4 LINE L1 -208 7834 7690 35 0 0 0 chr3 131234412 131234447 -86802711 + AT_rich Low_complexity Low_complexity 1 35 0 1380 128 58 0 chr3 131234449 131234592 -86802566 - L1MA4 LINE L1 -6 6294 6130 2093 126 10 10 chr3 131234592 131234894 -86802264 - AluSx SINE Alu -10 302 1 1380 128 58 0 chr3 131234894 131234993 -86802165 - L1MA4 LINE L1 -170 6130 6038 2295 91 0 7 chr3 131235000 131235298 -86801860 - AluSc SINE Alu -13 296 1 2562 108 34 15 chr3 131235303 131235712 -86801446 - L1MA4A LINE L1 -4 6299 5883 267 268 21 10 chr3 131235726 131235823 -86801335 - L1MC4 LINE L1 -364 7678 7581 200 225 0 0 chr3 131235863 131235903 -86801255 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 192 189 0 0 chr3 131235939 131235976 -86801182 - MER5A DNA MER1_type -16 173 137 289 276 75 55 chr3 131235990 131236189 -86800969 + MER3 DNA MER1_type 7 209 0 * 1051 181 31 0 chr3 131236032 131236225 -86800933 - MER3 DNA MER1_type 0 209 11 547 180 9 23 chr3 131236540 131236658 -86800500 + MLT1A1 LTR MaLR 1 104 -261 1644 140 7 30 chr3 131237020 131237291 -86799867 - AluSx SINE Alu -1 311 47 634 214 65 30 chr3 131237317 131237390 -86799768 + MER41D LTR ERV1 384 453 -104 1962 106 64 7 chr3 131237390 131237673 -86799485 - AluSc SINE Alu -9 300 2 634 214 65 30 chr3 131237673 131237767 -86799391 + MER41D LTR ERV1 453 557 0 344 209 45 64 chr3 131237767 131237877 -86799281 + MER41D-int LTR ERV1 1 108 -5838 359 274 104 0 chr3 131237945 131238051 -86799107 + MER41D-int LTR ERV1 272 388 -5558 2375 97 0 13 chr3 131238147 131238318 -86798840 - AluSx SINE Alu -8 304 137 2309 108 0 13 chr3 131238318 131238624 -86798534 - AluSc SINE Alu -7 302 1 2375 97 0 13 chr3 131238624 131238760 -86798398 - AluSx SINE Alu -175 137 1 1507 304 63 66 chr3 131239011 131239521 -86797637 + MER41D-int LTR ERV1 658 1168 -6588 2457 63 0 3 chr3 131239521 131239823 -86797335 - AluY SINE Alu -10 301 1 1507 304 63 66 chr3 131239823 131240508 -86796650 + MER41D-int LTR ERV1 1168 1850 -5906 3211 203 39 70 chr3 131240508 131241492 -86795666 + LTR5 LTR ERVK 1 953 -16 1217 215 15 44 chr3 131241634 131241908 -86795250 + AluJo SINE Alu 14 279 -33 414 133 0 0 chr3 131241941 131242001 -86795157 + AluJ/FLAM SINE Alu 5 64 -248 246 322 43 0 chr3 131242047 131242162 -86794996 + L2 LINE L2 2540 2659 -655 295 313 35 19 chr3 131242391 131242698 -86794460 + L2 LINE L2 2720 3070 -243 2148 119 3 3 chr3 131242790 131243092 -86794066 + AluSq SINE Alu 1 302 -11 441 252 204 7 chr3 131244180 131244327 -86792831 - MER5A DNA MER1_type -6 183 8 285 273 13 0 chr3 131244335 131244412 -86792746 - MIR3 SINE MIR -49 159 82 2171 122 0 0 chr3 131246254 131246540 -86790618 + AluSx SINE Alu 4 289 -23 24 0 0 0 chr3 131246551 131246575 -86790583 + AT_rich Low_complexity Low_complexity 1 24 0 2023 138 7 7 chr3 131246584 131246881 -86790277 + AluSx SINE Alu 1 297 -15 625 307 0 34 chr3 131247913 131248092 -86789066 - MIR3 SINE MIR -15 193 21 340 311 142 11 chr3 131248146 131248163 -86788995 + MIR SINE MIR 56 69 -193 2160 100 0 0 chr3 131248163 131248443 -86788715 - AluSg SINE Alu -5 305 26 340 311 142 11 chr3 131248443 131248608 -86788550 + MIR SINE MIR 69 262 0 2569 210 26 12 chr3 131248768 131249348 -86787810 - L1M4 LINE L1 -1828 4318 3731 605 160 30 0 chr3 131249358 131249458 -86787700 - U13 snRNA snRNA -1 103 1 2215 134 41 0 chr3 131249499 131249841 -86787317 + MER46B DNA MER2_type 1 231 -5 1643 253 59 21 chr3 131249844 131250076 -86787082 - L1M4 LINE L1 -2441 3705 3483 1781 139 42 127 chr3 131250076 131250509 -86786649 - MSTD LTR MaLR 0 396 1 1643 253 59 21 chr3 131250509 131250856 -86786302 - L1M4 LINE L1 -2663 3483 3104 456 316 18 59 chr3 131250858 131251075 -86786083 - L1M4 LINE L1 -3569 2577 2372 1841 129 47 0 chr3 131251075 131251353 -86785805 + AluSx SINE Alu 1 291 -21 456 316 18 59 chr3 131251353 131251407 -86785751 - L1M4 LINE L1 -3774 2372 2317 501 224 24 0 chr3 131251437 131251562 -86785596 - L1M4 LINE L1 -3120 3026 2899 1174 178 14 0 chr3 131251564 131251772 -86785386 - AluJb SINE Alu -16 296 86 545 207 82 0 chr3 131251772 131251907 -86785251 - L1M4 LINE L1 -3238 2908 2763 1524 82 0 48 chr3 131251907 131252114 -86785044 - AluSc SINE Alu -112 197 1 320 251 145 60 chr3 131252125 131252243 -86784915 - L1 LINE L1 -1656 4490 4383 2299 93 0 37 chr3 131252243 131252565 -86784593 - AluSg SINE Alu 0 310 1 320 251 145 60 chr3 131252565 131252729 -86784429 - L1 LINE L1 -1763 4383 4184 23 0 0 0 chr3 131252771 131252794 -86784364 + AT_rich Low_complexity Low_complexity 1 23 0 1336 153 22 5 chr3 131252877 131253100 -86784058 + AluJb SINE Alu 86 312 0 290 170 0 0 chr3 131253154 131253201 -86783957 + U6 snRNA snRNA 1 47 -60 1783 168 0 13 chr3 131253263 131253399 -86783759 + AluJb SINE Alu 1 137 -175 2217 102 0 3 chr3 131253399 131253694 -86783464 + AluSx SINE Alu 1 294 -18 1783 168 0 13 chr3 131253694 131253855 -86783303 + AluJb SINE Alu 137 294 -18 1017 128 0 0 chr3 131255111 131255244 -86781914 + FLAM_C SINE Alu 1 133 0 181 309 95 12 chr3 131255429 131255513 -86781645 + MIR SINE MIR 51 141 -67 219 88 0 0 chr3 131256444 131256478 -86780680 + (CTTTG)n Simple_repeat Simple_repeat 2 35 0 * 672 13 0 0 chr3 131256477 131256554 -86780604 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 1529 186 17 28 chr3 131256573 131256864 -86780294 - AluJo SINE Alu -22 290 3 1197 198 13 4 chr3 131256945 131257177 -86779981 + AluJo SINE Alu 15 248 -64 723 154 0 65 chr3 131257181 131257343 -86779815 + AluJb SINE Alu 168 321 0 2223 132 0 0 chr3 131257429 131257732 -86779426 + AluSx SINE Alu 1 303 -9 1732 190 7 7 chr3 131257752 131258062 -86779096 + AluJo SINE Alu 1 310 -2 562 181 53 23 chr3 131258761 131258841 -86778317 + Charlie5 DNA MER1_type 1 88 -2536 1591 169 14 27 chr3 131258841 131259136 -86778022 - AluJo SINE Alu -18 294 4 562 181 53 23 chr3 131259136 131259188 -86777970 + Charlie5 DNA MER1_type 88 137 -2487 * 1021 154 51 5 chr3 131259185 131259380 -86777778 + Charlie5 DNA MER1_type 2246 2449 -163 1822 112 94 0 chr3 131259503 131259770 -86777388 + AluSx SINE Alu 1 292 -20 21 36 0 0 chr3 131259816 131259844 -86777314 + AT_rich Low_complexity Low_complexity 1 28 0 1376 117 0 5 chr3 131259961 131260149 -86777009 + AluSg/x SINE Alu 108 294 -16 252 0 0 0 chr3 131260164 131260192 -86776966 + (CA)n Simple_repeat Simple_repeat 2 29 0 202 158 53 18 chr3 131260319 131260376 -86776782 + T-rich Low_complexity Low_complexity 2 60 0 1231 115 0 0 chr3 131260381 131260546 -86776612 + AluSc SINE Alu 63 227 -82 1427 127 24 71 chr3 131260566 131260850 -86776308 + AluJb SINE Alu 73 344 0 477 111 0 0 chr3 131260871 131260934 -86776224 + AluJ/FLAM SINE Alu 2 64 -248 * 709 154 18 0 chr3 131260932 131261042 -86776116 - FLAM_A SINE Alu -30 112 1 1962 128 0 4 chr3 131261782 131262055 -86775103 + AluSg SINE Alu 1 272 -38 2215 97 3 17 chr3 131262310 131262608 -86774550 + AluSx SINE Alu 1 294 -18 483 107 0 0 chr3 131262608 131262683 -86774475 + (TA)n Simple_repeat Simple_repeat 1 75 0 226 152 0 0 chr3 131262683 131262729 -86774429 - LTR66 LTR ERVL -171 439 394 * 227 125 0 0 chr3 131262700 131262740 -86774418 + LTR66 LTR ERVL 399 438 -172 25 0 0 0 chr3 131262902 131262927 -86774231 + AT_rich Low_complexity Low_complexity 1 25 0 939 204 68 18 chr3 131262950 131263171 -86773987 + AluJb SINE Alu 73 304 -8 442 256 44 25 chr3 131263299 131263459 -86773699 + MLT1I LTR MaLR 239 401 -8 191 238 218 30 chr3 131263505 131263606 -86773552 + L3 LINE CR1 1450 1569 -8 195 296 173 0 chr3 131263889 131263970 -86773188 + MIR SINE MIR 20 114 -148 2129 127 0 10 chr3 131264001 131264309 -86772849 + AluSg SINE Alu 1 305 -5 201 233 0 0 chr3 131264697 131264740 -86772418 + (CA)n Simple_repeat Simple_repeat 1 43 0 1427 146 0 9 chr3 131266335 131266554 -86770604 + AluSg/x SINE Alu 85 301 -9 271 289 39 19 chr3 131266928 131267032 -86770126 - L1MC4 LINE L1 -33 8009 7904 25 0 0 0 chr3 131267138 131267163 -86769995 + AT_rich Low_complexity Low_complexity 1 25 0 2430 194 31 43 chr3 131267175 131267782 -86769376 - L1ME2 LINE L1 -10 6154 5555 2269 96 0 0 chr3 131267782 131268074 -86769084 - AluSg SINE Alu -18 292 1 259 281 53 21 chr3 131268633 131268963 -86768195 - L1MEc LINE L1 -4908 1402 941 339 309 47 16 chr3 131268975 131269279 -86767879 + CT-rich Low_complexity Low_complexity 1 313 0 1589 132 49 73 chr3 131269578 131269948 -86767210 - MER46B DNA MER2_type 0 236 1 217 310 171 0 chr3 131269948 131270106 -86767052 + MIR SINE MIR 78 262 0 821 165 120 67 chr3 131270451 131270569 -86766589 + MER5C DNA MER1_type 1 111 -213 1910 161 9 22 chr3 131270569 131270892 -86766266 - 7SLRNA srpRNA srpRNA -1 319 1 821 165 120 67 chr3 131270892 131271040 -86766118 + MER5C DNA MER1_type 111 281 -43 252 303 0 2 chr3 131271551 131271631 -86765527 - MIR SINE MIR -72 136 57 198 0 0 0 chr3 131272058 131272080 -86765078 + (T)n Simple_repeat Simple_repeat 1 22 0 814 86 19 0 chr3 131272080 131272185 -86764973 - U4 snRNA snRNA -26 119 13 198 0 0 0 chr3 131272274 131272296 -86764862 + (T)n Simple_repeat Simple_repeat 1 22 0 702 116 0 54 chr3 131272419 131272591 -86764567 - AluSg/x SINE Alu 0 323 159 1410 191 4 12 chr3 131272704 131272955 -86764203 - AluJo SINE Alu -63 249 1 2386 84 0 3 chr3 131274268 131274564 -86762594 - AluSg SINE Alu -15 295 1 1082 191 53 16 chr3 131274764 131275010 -86762148 - L1MD3 LINE L1 -5 7990 7736 1974 135 0 4 chr3 131275011 131275316 -86761842 - AluSg SINE Alu 0 304 1 1310 164 67 0 chr3 131275344 131275635 -86761523 - AluJb SINE Alu 0 378 73 336 304 0 0 chr3 131276019 131276111 -86761047 - L1MC4 LINE L1 -1337 6705 6614 246 192 0 0 chr3 131276112 131276164 -86760994 + (TA)n Simple_repeat Simple_repeat 1 52 0 447 272 37 62 chr3 131276164 131276407 -86760751 + L1MC4a LINE L1 5649 5885 -1923 478 184 74 49 chr3 131277025 131277188 -86759970 + Charlie7 DNA MER1_type 2446 2612 0 237 286 88 11 chr3 131278361 131278452 -86758706 + MIR SINE MIR 116 213 -49 476 343 30 93 chr3 131280171 131280535 -86756623 - L2 LINE L2 -1 3271 2931 823 291 31 31 chr3 131281775 131282102 -86755056 + L1ME LINE L1 168 494 -5576 1008 238 45 56 chr3 131282352 131282730 -86754428 + L1ME2 LINE L1 5789 6162 -2 297 0 0 0 chr3 131282775 131282808 -86754350 + (CA)n Simple_repeat Simple_repeat 2 34 0 442 208 52 0 chr3 131282809 131282905 -86754253 - Tigger2 DNA MER2_type -1 2717 2617 1873 136 0 4 chr3 131282905 131283170 -86753988 + AluSg SINE Alu 9 272 -38 2036 99 27 20 chr3 131283423 131283716 -86753442 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr3 131284279 131284300 -86752858 + AT_rich Low_complexity Low_complexity 1 21 0 526 290 24 6 chr3 131284956 131285125 -86752033 + L1PBb LINE L1 777 948 -5256 609 124 7 0 chr3 131285154 131285288 -86751870 - L1PA15-16 LINE L1 -6636 213 1 1474 223 48 30 chr3 131285335 131285796 -86751362 + L1PBb LINE L1 1954 2421 -3782 * 4870 186 18 17 chr3 131285792 131286803 -86750355 + L1 LINE L1 3905 4916 -1287 234 156 0 0 chr3 131286816 131286861 -86750297 + A-rich Low_complexity Low_complexity 2 46 0 315 232 80 53 chr3 131286861 131287012 -86750146 - MER57A LTR ERV1 -52 351 197 435 175 75 0 chr3 131287052 131287132 -86750026 - LTR54 LTR ERV1 -424 86 1 295 189 0 0 chr3 131287132 131287185 -86749973 + L1MC3 LINE L1 7506 7558 -227 223 178 0 0 chr3 131287333 131287378 -86749780 - MIR SINE MIR -94 168 124 286 111 0 0 chr3 131287381 131287426 -86749732 + AluSg SINE Alu 251 295 -5 3615 209 62 8 chr3 131288171 131289185 -86747973 - L1MD2 LINE L1 -1 6752 5517 441 175 88 29 chr3 131289163 131289300 -86747858 - L1MD2 LINE L1 -5074 1466 1322 * 1656 167 8 0 chr3 131292741 131293005 -86744153 + AluSx SINE Alu 9 274 -38 688 82 41 0 chr3 131293005 131293127 -86744031 + GA-rich Low_complexity Low_complexity 1 127 0 1388 181 13 0 chr3 131293377 131293615 -86743543 + AluJb SINE Alu 1 241 -71 10922 37 4 89 chr3 131293941 131295453 -86741705 + SVA Other Other 1 1384 -2 1517 87 0 48 chr3 131295626 131295833 -86741325 + AluSc SINE Alu 1 197 -112 545 207 82 0 chr3 131295833 131295968 -86741190 + L1M4 LINE L1 2763 2908 -3238 709 203 8 0 chr3 131295968 131296096 -86741062 + AluJb SINE Alu 86 214 -98 832 143 0 8 chr3 131296295 131296414 -86740744 + FLAM_C SINE Alu 1 118 -15 24 67 0 0 chr3 131296414 131296459 -86740699 + AT_rich Low_complexity Low_complexity 1 45 0 289 243 86 0 chr3 131297267 131297337 -86739821 + MIR SINE MIR 22 97 -165 1264 67 18 0 chr3 131297337 131297501 -86739657 - AluY SINE Alu -11 300 134 2296 93 0 27 chr3 131297585 131297886 -86739272 - AluSg SINE Alu -17 293 1 1787 164 10 23 chr3 131297894 131298199 -86738959 - AluJo SINE Alu -6 306 6 2145 125 7 3 chr3 131299229 131299534 -86737624 + AluSx SINE Alu 1 306 -6 307 179 75 0 chr3 131299848 131299915 -86737243 - MLT1A1 LTR MaLR 0 365 294 2112 125 7 0 chr3 131299918 131300213 -86736945 + AluSx SINE Alu 1 297 -15 585 185 28 0 chr3 131300454 131300562 -86736596 + FRAM SINE Alu 41 151 -25 274 244 49 12 chr3 131301114 131301196 -86735962 + MIR3 SINE MIR 123 207 -1 273 253 65 91 chr3 131302150 131302304 -86734854 + L3 LINE CR1 1233 1382 -195 1894 170 128 17 chr3 131302795 131303255 -86733903 - Charlie1 DNA MER1_type -9 2752 2242 2350 99 0 3 chr3 131303257 131303561 -86733597 - AluSx SINE Alu -9 303 1 1730 107 0 32 chr3 131304225 131304478 -86732680 + AluY SINE Alu 60 304 -7 785 175 0 22 chr3 131304545 131304682 -86732476 - AluJo SINE Alu -177 135 2 2279 99 0 10 chr3 131304717 131305021 -86732137 + AluSc SINE Alu 1 301 -8 378 227 159 44 chr3 131305117 131305402 -86731756 - MER41D-int LTR ERV1 -5558 388 1 396 203 13 0 chr3 131305402 131305481 -86731677 - MER41D LTR ERV1 0 557 478 353 139 0 56 chr3 131305496 131305568 -86731590 + AluS SINE Alu 2 69 -234 184 211 0 0 chr3 131305967 131306005 -86731153 + A-rich Low_complexity Low_complexity 1 38 0 1528 205 45 58 chr3 131306328 131306865 -86730293 - L1M4 LINE L1 -2688 3458 2929 602 217 42 0 chr3 131306865 131307008 -86730150 + AluJb SINE Alu 157 305 -7 1455 223 32 35 chr3 131307029 131307492 -86729666 - L1M4 LINE L1 -3203 2943 2482 348 24 0 0 chr3 131307493 131307534 -86729624 + (TG)n Simple_repeat Simple_repeat 2 42 0 1435 156 5 0 chr3 131307569 131307780 -86729378 - AluSx SINE Alu -100 212 1 1903 270 9 6 chr3 131307782 131308249 -86728909 + PRIMA41-int LTR ERV1 5519 5986 -1770 22 0 0 0 chr3 131308758 131308780 -86728378 + GC_rich Low_complexity Low_complexity 1 22 0 527 250 9 0 chr3 131311281 131311393 -86725765 - MER81 DNA DNA -1 113 1 203 267 0 0 chr3 131311787 131311832 -86725326 + (CCCGAA)n Simple_repeat Simple_repeat 3 47 0 3404 182 154 112 chr3 131312236 131313124 -86724034 + L1MC3 LINE L1 6163 7215 -570 479 189 32 11 chr3 131313124 131313219 -86723939 + MLT1F1 LTR MaLR 35 131 -436 3404 182 154 112 chr3 131313219 131313550 -86723608 + L1MC3 LINE L1 7215 7531 -254 899 100 8 0 chr3 131313551 131313671 -86723487 + AluSq/x SINE Alu 1 121 -192 219 200 0 20 chr3 131314737 131314787 -86722371 + L2 LINE L2 3262 3310 -3 206 200 0 0 chr3 131315238 131315273 -86721885 + (TG)n Simple_repeat Simple_repeat 2 36 0 1230 241 52 7 chr3 131315308 131315748 -86721410 - L1M4 LINE L1 -2686 3460 3001 1039 171 0 0 chr3 131315930 131316094 -86721064 + AluJb SINE Alu 149 312 0 2164 126 7 7 chr3 131317523 131317832 -86719326 - AluSx SINE Alu -1 311 3 2202 102 0 10 chr3 131317911 131318216 -86718942 - AluSc SINE Alu -7 302 1 264 245 66 94 chr3 131318745 131318851 -86718307 - MER63 DNA MER1_type -332 730 2 * 326 167 0 0 chr3 131318851 131318903 -86718255 + Charlie1 DNA MER1_type 2668 2719 -42 332 288 92 6 chr3 131319076 131319239 -86717919 - MIR SINE MIR 0 262 86 224 271 181 8 chr3 131319507 131319640 -86717518 - L2 LINE L2 0 3313 3158 1897 189 61 11 chr3 131320060 131320516 -86716642 - L1M4 LINE L1 -1468 4678 4200 219 286 29 0 chr3 131320791 131320861 -86716297 + L2 LINE L2 3242 3313 0 2174 110 4 0 chr3 131320882 131321183 -86715975 + AluSx SINE Alu 1 302 0 457 220 0 0 chr3 131321490 131321590 -86715568 + AluSg/x SINE Alu 199 298 -11 431 145 0 0 chr3 131321590 131321652 -86715506 - AluJ/FLAM SINE Alu -249 63 2 944 203 0 0 chr3 131321661 131321824 -86715334 - FRAM SINE Alu -3 163 1 233 268 0 28 chr3 131321901 131321972 -86715186 + CT-rich Low_complexity Low_complexity 6 74 0 2257 109 3 0 chr3 131321998 131322300 -86714858 + AluSq SINE Alu 1 303 -10 2382 93 3 3 chr3 131322300 131322600 -86714558 + AluSp SINE Alu 1 300 -13 1446 190 75 0 chr3 131322622 131322901 -86714257 + AluJo SINE Alu 1 300 -12 301 98 0 39 chr3 131323066 131323117 -86714041 - Alu SINE Alu -254 49 1 369 271 15 15 chr3 131323138 131323271 -86713887 - L1MCa LINE L1 -4738 1477 1345 1721 168 19 10 chr3 131323294 131323603 -86713555 - AluSx SINE Alu 0 312 1 310 339 77 18 chr3 131323736 131323904 -86713254 - L1MCa LINE L1 -5023 1373 1196 753 128 0 0 chr3 131323907 131324016 -86713142 - AluSg/x SINE Alu -15 295 187 1201 262 73 34 chr3 131324023 131324554 -86712604 - L1MCa LINE L1 -5632 764 213 500 217 7 36 chr3 131324702 131324840 -86712318 - FLAM_C SINE Alu 0 143 10 917 241 35 0 chr3 131324845 131325044 -86712114 + MLT1A1 LTR MaLR 160 365 0 195 129 0 0 chr3 131325131 131325162 -86711996 + (A)n Simple_repeat Simple_repeat 1 31 0 2176 138 0 3 chr3 131327614 131327926 -86709232 - AluSx SINE Alu -1 311 1 1913 156 80 33 chr3 131328047 131328437 -86708721 - MSTC LTR MaLR -19 409 2 418 196 22 0 chr3 131328438 131328530 -86708628 - MSTC-int LTR MaLR 0 1735 1642 1798 266 74 30 chr3 131328538 131329080 -86708078 - MSTC-int LTR MaLR -199 1536 971 1380 214 51 52 chr3 131329207 131329396 -86707762 - L1ME LINE L1 -507 5659 5471 1533 172 63 0 chr3 131329396 131329664 -86707494 + AluJb SINE Alu 1 285 -27 190 0 67 0 chr3 131329668 131329698 -86707460 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1380 214 51 52 chr3 131329698 131329960 -86707198 - L1ME LINE L1 -698 5468 5207 242 29 29 0 chr3 131329960 131329995 -86707163 + (ATTG)n Simple_repeat Simple_repeat 1 36 0 1947 109 8 4 chr3 131329995 131330260 -86706898 - AluSg SINE Alu -44 266 1 1380 214 51 52 chr3 131330260 131330494 -86706664 - L1ME LINE L1 -957 5209 4964 3355 129 12 4 chr3 131330649 131331139 -86706019 - MER1A DNA MER1_type -33 496 3 2021 115 6 50 chr3 131331425 131331746 -86705412 + AluSc SINE Alu 1 307 -2 1647 176 0 50 chr3 131331831 131332149 -86705009 + AluJo SINE Alu 1 302 -10 22 0 0 0 chr3 131333655 131333677 -86703481 + AT_rich Low_complexity Low_complexity 1 22 0 840 144 86 0 chr3 131334770 131334944 -86702214 + L1MA4A LINE L1 6115 6303 0 342 253 152 25 chr3 131334962 131335160 -86701998 + L2 LINE L2 3090 3312 -1 316 231 58 19 chr3 131335158 131335262 -86701896 - MIR SINE MIR -102 160 53 * 341 339 3 23 chr3 131337925 131338261 -86698897 + G-rich Low_complexity Low_complexity 1 329 0 2754 204 58 7 chr3 131338865 131339463 -86697695 - MER82 DNA MER2_type -2 651 23 2461 70 0 3 chr3 131341666 131341967 -86695191 + AluSg1 SINE Alu 1 300 -9 438 288 30 39 chr3 131342669 131342959 -86694199 - L1MC4 LINE L1 -1100 6793 6420 322 95 0 0 chr3 131342995 131343037 -86694121 - 5S rRNA rRNA -79 42 1 23 0 0 0 chr3 131343065 131343088 -86694070 + AT_rich Low_complexity Low_complexity 1 23 0 234 304 127 55 chr3 131343106 131343491 -86693667 - HAL1b LINE L1 -524 824 412 437 121 0 8 chr3 131343806 131343893 -86693265 + L1M LINE L1 5311 5394 -966 2059 117 3 13 chr3 131343893 131344297 -86692861 + AluSg SINE Alu 1 401 0 37 52 0 0 chr3 131444312 131444370 -86592788 + AT_rich Low_complexity Low_complexity 1 58 0 29 47 0 0 chr3 131444393 131444436 -86592722 + AT_rich Low_complexity Low_complexity 1 43 0 30752 67 4 12 chr3 131444624 131449028 -86588130 + L1P LINE L1 638 5003 -1143 264 368 0 0 chr3 131451780 131451875 -86585283 + (CA)n Simple_repeat Simple_repeat 1 95 0 531 85 0 0 chr3 131451957 131452039 -86585119 + (TA)n Simple_repeat Simple_repeat 1 82 0 252 279 119 50 chr3 131452399 131452618 -86584540 - L3 LINE CR1 -37 1540 1307 1175 112 0 0 chr3 131453066 131453227 -86583931 - AluSp SINE Alu -2 311 151 310 263 158 11 chr3 131453361 131453456 -86583702 + MER5A DNA MER1_type 4 112 -77 194 337 103 15 chr3 131454200 131454340 -86582818 + MIR SINE MIR 16 165 -72 478 266 119 18 chr3 131454411 131454629 -86582529 + MIR SINE MIR 2 241 -21 24 32 0 0 chr3 131455781 131455812 -86581346 + AT_rich Low_complexity Low_complexity 1 31 0 187 54 54 0 chr3 131455971 131456008 -86581150 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 246 62 0 0 chr3 131457020 131457052 -86580106 + (TC)n Simple_repeat Simple_repeat 1 32 0 219 327 0 0 chr3 131457275 131457330 -86579828 - MIR SINE MIR -162 100 46 187 362 0 0 chr3 131457802 131457860 -86579298 + MIR SINE MIR 30 87 -175 868 229 70 28 chr3 131458125 131458409 -86578749 - L1M4 LINE L1 -1181 4965 4670 707 219 148 25 chr3 131458409 131458687 -86578471 - L1M4 LINE L1 -2315 3831 3520 2085 125 14 0 chr3 131458711 131459000 -86578158 - AluSc SINE Alu -16 293 1 345 253 77 0 chr3 131459163 131459254 -86577904 + MIR SINE MIR 57 154 -108 294 132 29 15 chr3 131459369 131459437 -86577721 - AluSp/q SINE Alu 0 303 235 1177 181 45 20 chr3 131459549 131459932 -86577226 + L1MB8 LINE L1 5070 5464 -702 1875 137 89 22 chr3 131459936 131460294 -86576864 - MLT1B LTR MaLR -4 386 5 1269 233 64 5 chr3 131460303 131460676 -86576482 + L1MB8 LINE L1 5780 6174 -4 1698 174 3 27 chr3 131460806 131461100 -86576058 + AluJo SINE Alu 2 288 -24 303 212 76 25 chr3 131461116 131461234 -86575924 - HAL1b LINE L1 -256 1092 969 1940 127 10 23 chr3 131461860 131462167 -86574991 + AluSq SINE Alu 1 303 -10 181 226 107 71 chr3 131462773 131462857 -86574301 + L3 LINE CR1 138 224 -1353 317 237 9 97 chr3 131463280 131463394 -86573764 + L2 LINE L2 3209 3312 -1 2086 119 54 25 chr3 131464069 131464423 -86572735 - THE1B LTR MaLR 0 364 1 11714 90 9 4 chr3 131464423 131465994 -86571164 - THE1B-int LTR MaLR 0 1580 1 1202 106 18 41 chr3 131465994 131466212 -86570946 - THE1B LTR MaLR 0 364 152 1739 168 23 32 chr3 131467228 131467537 -86569621 - AluJo SINE Alu -2 310 5 327 260 0 0 chr3 131469318 131469395 -86567763 + L2 LINE L2 3235 3311 -2 445 301 57 8 chr3 131469747 131469870 -86567288 - MER5A DNA MER1_type 0 189 61 2294 113 3 0 chr3 131469891 131470200 -86566958 - AluSx SINE Alu -2 310 1 2049 160 10 0 chr3 131470230 131470537 -86566621 - AluJo SINE Alu -1 311 2 427 167 0 0 chr3 131470548 131470614 -86566544 - MER5A DNA MER1_type -123 66 1 369 0 0 0 chr3 131470632 131470673 -86566485 + (CA)n Simple_repeat Simple_repeat 2 42 0 448 313 78 16 chr3 131470673 131470865 -86566293 + MIR SINE MIR 29 232 -30 980 294 72 15 chr3 131471343 131471799 -86565359 - ERVL LTR ERVL -2106 3658 3177 331 216 0 57 chr3 131471801 131471889 -86565269 + MER94 DNA DNA 1 83 -51 311 173 77 149 chr3 131471979 131472081 -86565077 + HAL1b LINE L1 281 368 -980 692 273 22 6 chr3 131472081 131472264 -86564894 - MER5A DNA MER1_type -3 186 1 311 173 77 149 chr3 131472264 131472329 -86564829 + HAL1b LINE L1 368 436 -912 262 207 17 0 chr3 131472369 131472427 -86564731 + HAL1b LINE L1 396 454 -894 243 0 0 0 chr3 131472896 131472923 -86564235 + (CAG)n Simple_repeat Simple_repeat 1 27 0 278 298 93 7 chr3 131473256 131473407 -86563751 + MER103 DNA DNA 2 165 -1 933 272 38 13 chr3 131473704 131473943 -86563215 - MIR SINE MIR -13 249 5 216 259 74 0 chr3 131474244 131474298 -86562860 - MIR SINE MIR -1 261 204 335 343 0 0 chr3 131474464 131474572 -86562586 + L1MEc LINE L1 1713 1820 -4576 541 285 64 41 chr3 131474585 131474880 -86562278 + L1MEc LINE L1 1872 2173 -4223 2276 112 3 0 chr3 131474884 131475188 -86561970 + AluSx SINE Alu 1 305 -7 2825 124 49 22 chr3 131475197 131475747 -86561411 + L1MB7 LINE L1 5368 5932 -252 1309 105 60 53 chr3 131475855 131476280 -86560878 + LTR8A LTR ERV1 200 727 0 2071 142 81 10 chr3 131476482 131476890 -86560268 - LTR23 LTR ERV1 0 437 1 29 0 0 0 chr3 131478746 131478775 -86558383 + AT_rich Low_complexity Low_complexity 1 29 0 663 277 36 20 chr3 131479331 131479526 -86557632 - MIR SINE MIR -19 243 46 292 267 52 19 chr3 131479830 131480023 -86557135 - L1MC4a LINE L1 -301 5820 5703 70 49 0 28 chr3 131480259 131480401 -86556757 + AT_rich Low_complexity Low_complexity 1 138 0 4075 171 14 13 chr3 131480694 131481485 -86555673 - MST-int LTR MaLR -14 1637 846 1270 173 35 35 chr3 131481486 131481741 -86555417 - MSTA LTR MaLR -173 255 1 380 178 59 42 chr3 131482097 131482215 -86554943 - L1MC4a LINE L1 -1063 5083 4964 507 192 0 0 chr3 131482309 131482408 -86554750 - L1MC4a LINE L1 -1197 4949 4851 1050 198 16 51 chr3 131482428 131482685 -86554473 + L1MC2 LINE L1 4695 4941 -1205 1582 201 38 0 chr3 131482685 131482804 -86554354 + AluJb SINE Alu 1 114 -198 180 0 0 0 chr3 131482804 131482824 -86554334 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1582 201 38 0 chr3 131482824 131482993 -86554165 + AluJb SINE Alu 114 300 -12 1050 198 16 51 chr3 131482993 131483048 -86554110 + L1MC2 LINE L1 4941 4996 -1150 1514 166 3 29 chr3 131483211 131483519 -86553639 + MLT1A1 LTR MaLR 66 365 0 1189 272 45 43 chr3 131483633 131484188 -86552970 - L1ME3A LINE L1 -5 6165 5610 821 214 12 0 chr3 131484188 131484356 -86552802 + MLT1F1 LTR MaLR 1 170 -397 3954 191 55 61 chr3 131484500 131485576 -86551582 - L1MDb LINE L1 -4988 1421 353 427 342 63 26 chr3 131485910 131486261 -86550897 + L2 LINE L2 2474 2837 -477 270 287 174 9 chr3 131486297 131486412 -86550746 + L2 LINE L2 2909 3042 -230 331 257 27 0 chr3 131486428 131486502 -86550656 - L2 LINE L2 -11 3302 3227 591 264 68 12 chr3 131486836 131486999 -86550159 + MIR SINE MIR 4 175 -87 1759 207 5 5 chr3 131487164 131487551 -86549607 + L1MC2 LINE L1 5440 5826 -518 773 174 0 21 chr3 131487552 131487696 -86549462 + FLAM_C SINE Alu 3 143 0 1973 176 22 20 chr3 131487696 131488140 -86549018 + L1MC2 LINE L1 5822 6266 -78 5755 49 22 19 chr3 131488252 131489024 -86548134 + L1PA6 LINE L1 5380 6153 -1 2276 113 7 0 chr3 131489184 131489486 -86547672 - AluSg SINE Alu -6 304 1 412 304 52 30 chr3 131489897 131490167 -86546991 + MER20B DNA MER1_type 216 491 -292 664 231 88 8 chr3 131490306 131490544 -86546614 + MER20B DNA MER1_type 519 775 -8 255 283 47 26 chr3 131490765 131490956 -86546202 - L1M4 LINE L1 -1890 4256 4062 721 309 127 41 chr3 131491071 131491226 -86545932 + L2 LINE L2 2330 2470 -843 2348 126 27 0 chr3 131491226 131491591 -86545567 + THE1C LTR MaLR 1 375 0 721 309 127 41 chr3 131491591 131492055 -86545103 + L2 LINE L2 2470 3002 -311 2151 201 114 45 chr3 131492363 131492967 -86544191 + L1ME3 LINE L1 5169 5865 -297 219 36 0 0 chr3 131492967 131492995 -86544163 + (TATAA)n Simple_repeat Simple_repeat 5 32 0 2151 201 114 45 chr3 131492995 131493299 -86543859 + L1ME3 LINE L1 5865 6147 -15 321 385 33 0 chr3 131493321 131493443 -86543715 - L2 LINE L2 -333 2980 2855 1026 343 84 34 chr3 131494690 131495911 -86541247 + L2 LINE L2 1965 3308 -5 255 333 15 44 chr3 131496283 131496418 -86540740 + MIR SINE MIR 16 146 -62 434 279 48 71 chr3 131497312 131497663 -86539495 + L1MEd LINE L1 664 1006 -5113 365 265 185 35 chr3 131497664 131498128 -86539030 + HAL1 LINE L1 1113 1646 -861 280 279 127 20 chr3 131498662 131498999 -86538159 + L1MEd LINE L1 2096 2482 -3647 252 86 0 0 chr3 131498999 131499034 -86538124 + (TG)n Simple_repeat Simple_repeat 2 36 0 280 279 127 20 chr3 131499034 131499090 -86538068 + L1MEd LINE L1 2482 2531 -3598 32 57 0 0 chr3 131499308 131499361 -86537797 + AT_rich Low_complexity Low_complexity 1 53 0 29 0 0 0 chr3 131499479 131499508 -86537650 + AT_rich Low_complexity Low_complexity 1 29 0 195 42 0 0 chr3 131499555 131499579 -86537579 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 945 205 0 0 chr3 131499580 131499746 -86537412 - FAM SINE Alu -9 166 1 357 228 92 48 chr3 131499749 131500043 -86537115 + L1MEd LINE L1 2976 3282 -2847 9160 145 41 35 chr3 131500075 131501940 -86535218 - L1MA4 LINE L1 -9 6291 4438 1604 197 3 10 chr3 131501940 131502234 -86534924 - AluJo SINE Alu -11 301 10 9160 145 41 35 chr3 131502234 131502256 -86534902 - L1MA4 LINE L1 -1862 4438 4418 414 0 0 0 chr3 131502256 131502302 -86534856 + (TG)n Simple_repeat Simple_repeat 2 47 0 9160 145 41 35 chr3 131502302 131503299 -86533859 - L1MA4 LINE L1 -1882 4418 3370 42 17 0 17 chr3 131503299 131503329 -86533829 + AT_rich Low_complexity Low_complexity 1 30 -29 1957 152 0 3 chr3 131503329 131503619 -86533539 - AluSx SINE Alu -23 289 1 42 17 0 17 chr3 131503619 131503648 -86533510 + AT_rich Low_complexity Low_complexity 30 59 0 682 279 54 48 chr3 131503700 131503875 -86533283 + L1MEd LINE L1 3768 3940 -2189 2173 151 0 0 chr3 131503875 131504187 -86532971 + AluSx SINE Alu 1 312 0 682 279 54 48 chr3 131504187 131504528 -86532630 + L1MEd LINE L1 3940 4287 -1842 664 231 88 8 chr3 131504705 131504943 -86532215 - MER20B DNA MER1_type -8 775 519 832 321 52 27 chr3 131505082 131505561 -86531597 - MER20B DNA MER1_type -292 491 1 1253 291 83 15 chr3 131505889 131506562 -86530596 + L2 LINE L2 2492 3220 -93 25 0 0 0 chr3 131506945 131506970 -86530188 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr3 131507216 131507248 -86529910 + AT_rich Low_complexity Low_complexity 1 32 0 209 98 24 0 chr3 131507255 131507296 -86529862 + (TA)n Simple_repeat Simple_repeat 1 42 0 2604 151 36 4 chr3 131507378 131507875 -86529283 - L1MC1 LINE L1 -108 6225 5713 222 236 9 57 chr3 131507913 131508019 -86529139 + T-rich Low_complexity Low_complexity 4 104 0 2466 62 0 23 chr3 131508615 131508920 -86528238 + AluY SINE Alu 1 298 -13 382 302 81 14 chr3 131508935 131509230 -86527928 + HAL1b LINE L1 361 675 -673 412 232 26 7 chr3 131509792 131509932 -86527226 + L1ME3 LINE L1 6020 6162 -2 259 219 50 20 chr3 131509976 131510085 -86527073 + L1P LINE L1 5244 5355 -791 * 337 254 161 0 chr3 131510082 131510200 -86526958 + L1MC/D LINE L1 5592 5728 -2080 1136 148 5 11 chr3 131510200 131510235 -86526923 - MER4B LTR ERV1 0 664 630 2000 105 0 0 chr3 131510235 131510525 -86526633 - AluSq SINE Alu 0 307 18 1136 148 5 11 chr3 131510525 131510712 -86526446 - MER4B LTR ERV1 -34 630 400 311 40 0 20 chr3 131510729 131510779 -86526379 - AluY SINE Alu 0 300 252 1551 266 80 26 chr3 131510787 131511019 -86526139 - L1M4 LINE L1 -823 5323 5105 2444 72 16 3 chr3 131511019 131511323 -86525835 + AluSg SINE Alu 1 308 -2 1551 266 80 26 chr3 131511323 131512084 -86525074 - L1M4 LINE L1 -1041 5105 4277 268 396 0 10 chr3 131512502 131512603 -86524555 + MER5A DNA MER1_type 17 116 -73 214 188 125 0 chr3 131512641 131512689 -86524469 + MIR3 SINE MIR 152 205 -3 180 235 15 73 chr3 131513502 131513570 -86523588 + L2 LINE L2 3250 3313 0 2113 122 20 0 chr3 131513745 131514115 -86523043 - AluSg SINE Alu 0 376 1 345 253 77 0 chr3 131514278 131514369 -86522789 + MIR SINE MIR 57 154 -108 2137 107 37 17 chr3 131514483 131514782 -86522376 - AluSq SINE Alu -8 305 1 25 31 0 0 chr3 131516073 131516105 -86521053 + AT_rich Low_complexity Low_complexity 1 32 0 994 199 0 6 chr3 131517407 131517583 -86519575 + FAM SINE Alu 1 175 0 350 345 44 28 chr3 131518436 131518544 -86518614 - L3b LINE CR1 -205 1378 1273 2322 101 0 0 chr3 131518544 131518840 -86518318 + AluSx SINE Alu 1 296 -16 350 345 44 28 chr3 131518840 131518983 -86518175 - L3b LINE CR1 -310 1273 1123 672 205 19 13 chr3 131519276 131519432 -86517726 + MER103 DNA DNA 8 164 -2 21 0 0 0 chr3 131519767 131519788 -86517370 + AT_rich Low_complexity Low_complexity 1 21 0 337 192 101 30 chr3 131519927 131520026 -86517132 - L1ME3 LINE L1 -2 6160 6055 242 241 0 0 chr3 131520268 131520322 -86516836 + (TTTAA)n Simple_repeat Simple_repeat 5 58 0 213 312 128 18 chr3 131520322 131520431 -86516727 - L2 LINE L2 -5 3308 3188 234 346 20 79 chr3 131520878 131521181 -86515977 + L2 LINE L2 2468 2752 -562 191 273 164 23 chr3 131521311 131521439 -86515719 + L2 LINE L2 2915 3060 -212 22 35 0 0 chr3 131521522 131521551 -86515607 + AT_rich Low_complexity Low_complexity 1 29 0 218 115 66 0 chr3 131521627 131521688 -86515470 + (TA)n Simple_repeat Simple_repeat 2 66 0 2133 114 7 0 chr3 131521698 131521979 -86515179 - AluSx SINE Alu -29 283 1 182 217 65 0 chr3 131522001 131522047 -86515111 + L2 LINE L2 3210 3258 -14 180 152 0 0 chr3 131522247 131522280 -86514878 + (TG)n Simple_repeat Simple_repeat 2 34 0 257 51 26 0 chr3 131522499 131522538 -86514620 + (TG)n Simple_repeat Simple_repeat 2 41 0 32 0 0 0 chr3 131522993 131523025 -86514133 + AT_rich Low_complexity Low_complexity 1 32 0 37274 76 9 10 chr3 131523025 131529178 -86507980 - L1PA6 LINE L1 -1 6153 11 928 130 0 0 chr3 131529555 131529686 -86507472 + FLAM_C SINE Alu 1 131 -2 2037 156 0 6 chr3 131529713 131530027 -86507131 - AluSx SINE Alu 0 312 1 243 306 0 0 chr3 131530040 131530102 -86507056 + MIR SINE MIR 92 153 -55 199 70 23 23 chr3 131530274 131530317 -86506841 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1421 109 95 0 chr3 131530376 131530586 -86506572 - MER30 DNA MER1_type 0 230 1 2130 110 0 7 chr3 131530857 131531149 -86506009 - AluSc SINE Alu -15 294 5 207 0 0 0 chr3 131532886 131532909 -86504249 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2050 118 4 0 chr3 131532911 131533191 -86503967 - AluSx SINE Alu -31 281 1 597 315 230 8 chr3 131533870 131534226 -86502932 + L3 LINE CR1 1046 1480 -97 226 211 0 26 chr3 131534562 131534638 -86502520 + CT-rich Low_complexity Low_complexity 1 74 0 425 333 38 8 chr3 131535271 131535403 -86501755 - L2 LINE L2 -1 3271 3136 957 101 0 0 chr3 131535408 131535537 -86501621 + AluY SINE Alu 174 302 -9 364 301 26 72 chr3 131536378 131536571 -86500587 - MIR SINE MIR -6 256 73 291 301 11 97 chr3 131536495 131536681 -86500477 - MER5B DNA MER1_type -8 170 1 * 2518 78 0 0 chr3 131537474 131537782 -86499376 - AluY SINE Alu -3 308 1 393 336 44 105 chr3 131537803 131538069 -86499089 - L2 LINE L2 0 3272 2991 1838 170 3 0 chr3 131538069 131538390 -86498768 + AluJo SINE Alu 1 322 0 393 336 44 105 chr3 131538390 131538775 -86498383 - L2 LINE L2 -281 2991 2651 442 247 10 0 chr3 131538777 131538874 -86498284 + MER96B DNA MER1_type? 320 417 0 1053 331 78 19 chr3 131538895 131539520 -86497638 - L2 LINE L2 -811 2503 1842 754 221 169 131 chr3 131539536 131540400 -86496758 - LTR28 LTR ERV1 0 1755 1 385 321 230 13 chr3 131540423 131540741 -86496417 - L2 LINE L2 -1573 1741 1355 4514 233 81 38 chr3 131541105 131541537 -86495621 - L1MDb LINE L1 -2347 4059 3647 1688 144 35 74 chr3 131541537 131541849 -86495309 - AluJo SINE Alu -12 300 1 4514 233 81 38 chr3 131541849 131542824 -86494334 - L1MDb LINE L1 -2759 3647 2716 2183 99 3 0 chr3 131542824 131543127 -86494031 - AluSx SINE Alu 0 304 1 4514 233 81 38 chr3 131543127 131544690 -86492468 - L1MDb LINE L1 -3690 2716 1103 2375 113 3 0 chr3 131544690 131545000 -86492158 - AluSx SINE Alu -1 311 1 4514 233 81 38 chr3 131545000 131545746 -86491412 - L1MDb LINE L1 -5303 1103 391 732 124 133 0 chr3 131545771 131545884 -86491274 - FLAM_C SINE Alu -5 128 1 875 152 0 14 chr3 131546179 131546317 -86490841 - AluJb SINE Alu -176 136 1 1874 157 3 7 chr3 131546599 131546909 -86490249 - AluJb SINE Alu 0 310 2 30073 73 4 5 chr3 131547609 131553776 -86483382 + L1PA5 LINE L1 2 6154 0 2276 113 7 0 chr3 131553935 131554237 -86482921 - AluSg SINE Alu -6 304 1 1897 161 10 7 chr3 131554669 131554967 -86482191 + AluJo SINE Alu 2 300 -12 779 119 0 86 chr3 131554975 131555126 -86482032 + FLAM_C SINE Alu 6 143 0 195 272 194 29 chr3 131555883 131555986 -86481172 - MER5A DNA MER1_type -39 150 31 191 196 20 39 chr3 131556264 131556315 -86480843 + L2 LINE L2 3263 3312 -1 21 36 0 0 chr3 131556582 131556610 -86480548 + AT_rich Low_complexity Low_complexity 1 28 0 2316 116 0 0 chr3 131557114 131557415 -86479743 - AluSx SINE Alu -11 301 1 370 214 16 83 chr3 131557660 131557852 -86479306 + L1MC5 LINE L1 7307 7485 -476 812 166 0 63 chr3 131557858 131558033 -86479125 + FAM SINE Alu 1 40 -9 498 230 106 61 chr3 131558039 131558434 -86478724 + L1MC5 LINE L1 7473 7885 -76 25 83 0 0 chr3 131558624 131558684 -86478474 + AT_rich Low_complexity Low_complexity 1 60 0 792 130 0 62 chr3 131559528 131559707 -86477451 - L1PA12 LINE L1 -4616 2230 2066 18822 161 17 23 chr3 131559721 131564129 -86473029 - L1PA12 LINE L1 -3135 4449 57 2756 96 0 0 chr3 131564129 131564484 -86472674 - THE1A LTR MaLR 0 355 1 18822 161 17 23 chr3 131564484 131564541 -86472617 - L1PA12 LINE L1 -7527 57 1 6741 201 43 45 chr3 131564541 131567285 -86469873 - L1 LINE L1 -1680 5885 3180 1029 135 102 7 chr3 131567285 131567582 -86469576 + MSTA LTR MaLR 1 428 0 2735 126 21 4 chr3 131567582 131568057 -86469101 - L1 LINE L1 -4381 3184 2702 * 4072 170 14 1 chr3 131568045 131568744 -86468414 - L1 LINE L1 -6840 725 18 2317 130 3 11 chr3 131568790 131569166 -86467992 - L1PB3 LINE L1 -2 6152 5780 1001 97 26 0 chr3 131569205 131569359 -86467799 - L1PB3 LINE L1 -365 5789 5632 485 196 98 0 chr3 131569359 131569471 -86467687 + MER119 DNA MER1_type 461 583 0 269 254 0 14 chr3 131569621 131569692 -86467466 - MIR SINE MIR 0 262 193 852 129 92 32 chr3 131570199 131570416 -86466742 + L1MDa LINE L1 2324 2553 -3987 2488 81 3 0 chr3 131570420 131570729 -86466429 + AluSg SINE Alu 1 310 0 1546 178 65 7 chr3 131570737 131571013 -86466145 + AluJo SINE Alu 1 292 -20 638 195 5 54 chr3 131571014 131571219 -86465939 + L1M4 LINE L1 3848 4042 -2104 796 87 24 0 chr3 131571222 131571348 -86465810 + L1P5 LINE L1 5492 5620 -534 2043 105 15 85 chr3 131571348 131571527 -86465631 + MER41A LTR ERV1 193 332 -222 2224 88 3 26 chr3 131571527 131571832 -86465326 + AluY SINE Alu 3 300 -11 2043 105 15 85 chr3 131571832 131572041 -86465117 + MER41A LTR ERV1 332 554 0 533 78 100 0 chr3 131572041 131572131 -86465027 + MER41A-int LTR ERV1 1 99 -5847 1146 112 39 0 chr3 131572131 131572309 -86464849 + MER51B LTR ERV1 1 185 -192 1025 167 62 66 chr3 131572310 131572537 -86464621 - AluJb SINE Alu -14 298 73 2165 261 59 59 chr3 131572695 131573372 -86463786 - L1M4c LINE L1 -4054 2771 2096 1780 138 58 0 chr3 131573372 131573633 -86463525 - AluSx SINE Alu -36 276 1 2165 261 59 59 chr3 131573633 131575183 -86461975 - L1M4c LINE L1 -4729 2096 466 669 323 32 22 chr3 131575296 131575943 -86461215 + L1MEc LINE L1 1167 1820 -4576 580 276 72 41 chr3 131575956 131576249 -86460909 + L1MEc LINE L1 1872 2173 -4223 2154 113 3 0 chr3 131576253 131576566 -86460592 + AluSx SINE Alu 1 314 0 2036 142 3 10 chr3 131576803 131577114 -86460044 - AluSc SINE Alu 0 309 1 230 208 83 56 chr3 131577780 131577852 -86459306 + L2 LINE L2 3198 3271 -42 460 315 122 22 chr3 131577879 131578101 -86459057 + MIR SINE MIR 11 254 -8 331 344 28 37 chr3 131578207 131578425 -86458733 - L2 LINE L2 -645 2669 2454 553 76 13 0 chr3 131578618 131578697 -86458461 - MADE1 DNA Mariner 0 80 1 252 0 0 0 chr3 131582246 131582274 -86454884 + (TA)n Simple_repeat Simple_repeat 1 28 0 1274 169 35 35 chr3 131582681 131582936 -86454222 + MSTA LTR MaLR 1 255 -173 4724 154 9 8 chr3 131582937 131583742 -86453416 + MSTA-int LTR MaLR 846 1651 0 2562 154 17 2 chr3 131583742 131584164 -86452994 + MSTA LTR MaLR 1 428 0 311 233 0 135 chr3 131584347 131584480 -86452678 + L2 LINE L2 3199 3313 0 892 202 75 16 chr3 131585099 131585352 -86451806 - L1ME4a LINE L1 -238 5883 5616 344 268 9 71 chr3 131587165 131587277 -86449881 - L2 LINE L2 0 3313 3209 181 226 107 71 chr3 131587697 131587781 -86449377 - L3 LINE CR1 -1353 224 138 2240 104 0 13 chr3 131588387 131588694 -86448464 - AluSq SINE Alu -10 303 1 25 31 0 0 chr3 131589198 131589230 -86447928 + AT_rich Low_complexity Low_complexity 1 32 0 40966 32 22 2 chr3 131589251 131595276 -86441882 - L1PA3 LINE L1 0 6155 7 416 319 37 37 chr3 131596201 131596302 -86440856 + MIR SINE MIR 16 119 -143 1874 85 0 92 chr3 131596302 131596595 -86440563 - AluSx SINE Alu -46 266 1 416 319 37 37 chr3 131596595 131596684 -86440474 + MIR SINE MIR 118 206 -56 412 210 143 0 chr3 131599224 131599343 -86437815 - MER103 DNA DNA -3 163 28 893 291 64 81 chr3 131599356 131599473 -86437685 - L3 LINE CR1 -169 1408 1291 2293 116 0 0 chr3 131599473 131599774 -86437384 + AluSq SINE Alu 1 301 -12 893 291 64 81 chr3 131599774 131600137 -86437021 - L3 LINE CR1 -286 1291 936 1413 98 33 95 chr3 131600147 131600421 -86436737 - MER7A DNA MER2_type -10 327 71 271 211 0 14 chr3 131600423 131600494 -86436664 + L1MA4 LINE L1 6220 6289 -11 380 182 0 0 chr3 131600556 131600622 -86436536 - MER7A DNA MER2_type -260 86 23 1745 253 55 77 chr3 131600693 131601006 -86436152 - L2 LINE L2 -521 2793 2475 1569 204 17 20 chr3 131601006 131601300 -86435858 + AluJo SINE Alu 2 294 -18 1745 253 55 77 chr3 131601300 131601324 -86435834 - L2 LINE L2 -839 2475 2452 585 0 0 0 chr3 131601324 131601389 -86435769 + (GGAA)n Simple_repeat Simple_repeat 4 68 0 1745 253 55 77 chr3 131601389 131601790 -86435368 - L2 LINE L2 -862 2452 2070 959 188 0 6 chr3 131601806 131601976 -86435182 + FRAM SINE Alu 3 171 -5 333 231 43 34 chr3 131601977 131602094 -86435064 - L2 LINE L2 -1165 2149 2032 1803 176 10 0 chr3 131602266 131602562 -86434596 - AluJo SINE Alu -13 299 1 282 339 208 6 chr3 131602578 131602761 -86434397 + L2 LINE L2 2854 3073 -240 337 330 68 0 chr3 131602819 131602922 -86434236 - L2 LINE L2 -5 3267 3158 303 352 179 7 chr3 131603582 131603883 -86433275 + L2 LINE L2 2492 2844 -470 22 35 0 0 chr3 131604082 131604111 -86433047 + AT_rich Low_complexity Low_complexity 1 29 0 701 253 88 65 chr3 131604369 131604438 -86432720 - L1M4 LINE L1 -3164 2982 2916 1772 122 0 4 chr3 131604438 131604685 -86432473 - AluSx SINE Alu -13 299 54 701 253 88 65 chr3 131604685 131604932 -86432226 - L1M4 LINE L1 -3230 2916 2676 1815 179 0 22 chr3 131604932 131605251 -86431907 - AluJb SINE Alu 0 312 1 701 253 88 65 chr3 131605251 131605325 -86431833 - L1M4 LINE L1 -3470 2676 2605 963 204 0 0 chr3 131605325 131605487 -86431671 + FRAM SINE Alu 1 162 -4 701 253 88 65 chr3 131605487 131605820 -86431338 - L1M4 LINE L1 -3541 2605 2240 1603 188 24 10 chr3 131606043 131606331 -86430827 + AluJo SINE Alu 7 298 -14 21 0 0 0 chr3 131606426 131606447 -86430711 + AT_rich Low_complexity Low_complexity 1 21 0 2179 115 0 13 chr3 131606510 131606823 -86430335 + AluSx SINE Alu 1 309 -3 344 267 68 80 chr3 131607177 131607503 -86429655 + L1MCa LINE L1 2304 2632 -3794 264 59 0 0 chr3 131607555 131607589 -86429569 + (TA)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr3 131608263 131608285 -86428873 + AT_rich Low_complexity Low_complexity 1 22 0 587 286 100 61 chr3 131609259 131609749 -86427409 + MER109 Unknown Unknown 145 653 -1779 26 0 0 0 chr3 131609902 131609928 -86427230 + AT_rich Low_complexity Low_complexity 1 26 0 263 340 62 90 chr3 131610040 131610408 -86426750 + L2 LINE L2 2880 3237 -35 409 127 0 0 chr3 131610873 131610952 -86426206 - AluSp/q SINE Alu 0 313 235 182 208 104 21 chr3 131611258 131611306 -86425852 + L2 LINE L2 3215 3266 -6 204 395 26 26 chr3 131611870 131612022 -86425136 + L2 LINE L2 2703 2854 -460 2212 110 0 10 chr3 131612041 131612350 -86424808 - AluSg SINE Alu 0 310 5 411 363 109 30 chr3 131612393 131612732 -86424426 + L2 LINE L2 2895 3260 -12 321 162 182 20 chr3 131613992 131614091 -86423067 - L1ME3A LINE L1 -73 6097 5983 291 270 157 0 chr3 131614277 131614366 -86422792 - MIR SINE MIR -3 259 157 375 293 69 31 chr3 131614876 131615044 -86422114 - MIR SINE MIR -27 235 60 1989 133 0 20 chr3 131615322 131615478 -86421680 - AluSx SINE Alu -24 288 139 2447 69 13 0 chr3 131615478 131615784 -86421374 - AluSg SINE Alu 0 310 1 1989 133 0 20 chr3 131615784 131615921 -86421237 - AluSx SINE Alu -173 139 1 248 53 26 0 chr3 131615937 131615975 -86421183 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 2337 100 0 3 chr3 131615977 131616288 -86420870 - AluSx SINE Alu 0 312 3 2355 66 3 7 chr3 131616686 131616988 -86420170 - AluY SINE Alu -10 301 1 2274 94 3 0 chr3 131616992 131617301 -86419857 - AluSg SINE Alu 0 310 1 1999 117 17 3 chr3 131617301 131617600 -86419558 - AluSg1 SINE Alu -5 304 1 674 297 64 32 chr3 131618116 131618429 -86418729 - MER102b DNA MER1_type -18 323 1 523 298 73 19 chr3 131619845 131620050 -86417108 - MIR SINE MIR 0 262 47 239 307 13 0 chr3 131621254 131621329 -86415829 + MIR3 SINE MIR 122 197 -11 183 351 32 0 chr3 131621451 131621545 -86415613 + L3 LINE CR1 1279 1375 -202 668 255 39 20 chr3 131623439 131623643 -86413515 + MIR SINE MIR 52 259 -3 185 290 58 43 chr3 131623917 131623986 -86413172 + L2 LINE L2 3167 3236 -36 335 286 11 0 chr3 131624169 131624260 -86412898 - L2 LINE L2 0 3313 3222 458 147 126 0 chr3 131624316 131624411 -86412747 - MIR SINE MIR 0 262 156 447 273 87 31 chr3 131624684 131624885 -86412273 + L1ME LINE L1 4951 5139 -982 2156 114 3 3 chr3 131624885 131625184 -86411974 + AluSx SINE Alu 1 299 -13 447 273 87 31 chr3 131625184 131625475 -86411683 + L1ME LINE L1 5139 5479 -642 234 267 86 52 chr3 131625484 131625600 -86411558 + L1ME LINE L1 5695 5814 -307 3340 159 45 148 chr3 131625758 131626174 -86410984 - MER21A LTR ERV1 -35 896 635 843 217 0 6 chr3 131626174 131626331 -86410827 + FRAM SINE Alu 1 156 -10 3340 159 45 148 chr3 131626331 131626886 -86410272 - MER21A LTR ERV1 -296 635 25 207 100 0 0 chr3 131626886 131626916 -86410242 + (TATATG)n Simple_repeat Simple_repeat 4 33 0 312 267 48 38 chr3 131626934 131627039 -86410119 + MIR SINE MIR 156 261 -1 451 185 0 0 chr3 131627099 131627180 -86409978 - FLAM_A SINE Alu -15 127 47 28 61 0 0 chr3 131627254 131627303 -86409855 + AT_rich Low_complexity Low_complexity 1 49 0 2016 120 14 3 chr3 131627303 131627586 -86409572 - AluSx SINE Alu -26 286 1 2986 154 36 34 chr3 131627665 131628192 -86408966 - MER68 LTR ERV1 -32 530 3 188 267 0 0 chr3 131628264 131628309 -86408849 + L2 LINE L2 3251 3295 -18 1365 73 14 56 chr3 131630084 131630372 -86406786 - L1PA15 LINE L1 -4 6161 5738 839 190 19 15 chr3 131631781 131631986 -86405172 - L1MEc LINE L1 -3236 2979 2774 2377 96 3 0 chr3 131632005 131632317 -86404841 + AluSp SINE Alu 1 313 0 249 114 0 0 chr3 131632342 131632377 -86404781 - Tigger6 DNA MER2_type -1035 48 14 1071 202 16 125 chr3 131632443 131632883 -86404275 - L1MEc LINE L1 -3459 2756 2365 1153 205 64 4 chr3 131632888 131633122 -86404036 + Tigger7 DNA MER2_type 17 264 -2223 638 152 0 10 chr3 131633123 131633222 -86403936 + Tigger7 DNA MER2_type 2390 2487 0 1637 253 128 34 chr3 131633225 131634582 -86402576 - L1MEc LINE L1 -3993 2403 672 1629 200 34 90 chr3 131635038 131635514 -86401644 - MLT2B1 LTR ERVL -2 518 70 283 246 0 0 chr3 131635578 131635647 -86401511 - L1MEc LINE L1 -5935 270 202 727 198 156 0 chr3 131635668 131635835 -86401323 + MER58A DNA MER1_type 5 197 -27 1716 142 87 17 chr3 131636097 131636385 -86400773 + AluJo SINE Alu 1 308 -4 213 236 122 88 chr3 131636769 131636917 -86400241 - L2 LINE L2 -998 2316 2164 25 0 0 0 chr3 131637049 131637074 -86400084 + AT_rich Low_complexity Low_complexity 1 25 0 482 195 73 0 chr3 131637155 131637278 -86399880 + MER3 DNA MER1_type 37 168 -41 955 155 48 0 chr3 131637280 131637467 -86399691 + MER3 DNA MER1_type 2233 2428 0 380 216 27 9 chr3 131637501 131637612 -86399546 + MER3 DNA MER1_type 2508 2620 0 3600 130 0 20 chr3 131637832 131638370 -86398788 + MER1A DNA MER1_type 1 527 0 1348 146 88 122 chr3 131639273 131639657 -86397501 - MLT1A2 LTR MaLR 0 374 4 6987 56 11 14 chr3 131639925 131641721 -86395437 - L1PA8 LINE L1 0 6172 4376 376 242 87 47 chr3 131741855 131742004 -86295154 + MIR SINE MIR 105 259 -3 211 285 171 0 chr3 131742554 131742677 -86294481 + MIR3 SINE MIR 1 144 -64 337 336 22 7 chr3 131743335 131743472 -86293686 - MIR3 SINE MIR -17 191 53 2124 141 0 13 chr3 131743530 131743834 -86293324 - AluSx SINE Alu -12 300 1 207 250 0 0 chr3 131743940 131743984 -86293174 - L3 LINE CR1 -10 1567 1524 228 288 22 65 chr3 131744988 131745127 -86292031 + L1ME LINE L1 5778 5910 -211 287 322 35 9 chr3 131745249 131745364 -86291794 - MIR3 SINE MIR -84 124 7 889 181 7 0 chr3 131745515 131745670 -86291488 - L1PA16 LINE L1 -3 6163 6008 7180 124 79 29 chr3 131745670 131746894 -86290264 + pTR5 LTR ERV1 741 2025 -413 379 177 14 46 chr3 131746896 131747005 -86290153 + LTR30 LTR ERV1 375 478 -91 5760 161 23 7 chr3 131747130 131749077 -86288081 + L1MA4 LINE L1 4317 6298 -2 3724 123 7 16 chr3 131749173 131749748 -86287410 + MER7C DNA MER2_type 33 602 0 1195 288 82 31 chr3 131749757 131750527 -86286631 + L1M4 LINE L1 4519 5327 -819 225 0 0 0 chr3 131750529 131750554 -86286604 + (TCTCCC)n Simple_repeat Simple_repeat 1 25 0 3991 38 2 26 chr3 131750559 131751064 -86286094 + SVA Other Other 2 494 -892 29641 38 3 2 chr3 131751180 131756445 -86280713 - L1P LINE L1 -872 5274 1 2165 116 0 3 chr3 131756447 131756740 -86280418 - AluSc SINE Alu -17 292 1 357 233 105 8 chr3 131756740 131756873 -86280285 - L1M4c LINE L1 -4901 1527 1345 204 67 0 0 chr3 131756972 131757002 -86280156 + (A)n Simple_repeat Simple_repeat 1 30 0 689 272 100 52 chr3 131758408 131758798 -86278360 - L1ME LINE L1 -370 5751 5331 1591 178 43 16 chr3 131758798 131759102 -86278056 - AluJo SINE Alu 0 312 1 689 272 100 52 chr3 131759102 131759323 -86277835 - L1ME LINE L1 -790 5331 5122 634 253 104 18 chr3 131759552 131759773 -86277385 - L2 LINE L2 0 3313 3074 377 211 111 42 chr3 131760449 131760600 -86276558 + MIR SINE MIR 44 202 -60 21 36 0 0 chr3 131760606 131760634 -86276524 + AT_rich Low_complexity Low_complexity 1 28 0 810 295 42 7 chr3 131762832 131763202 -86273956 - L1ME4a LINE L1 -216 5905 5507 907 289 65 37 chr3 131763283 131763672 -86273486 - L1MC/D LINE L1 -744 5402 5240 2320 98 0 13 chr3 131763672 131763989 -86273169 + AluSq SINE Alu 1 313 0 907 289 65 37 chr3 131763989 131764276 -86272882 - L1MC/D LINE L1 -906 5240 4963 319 253 74 78 chr3 131764363 131764620 -86272538 - L1MC/D LINE L1 -1393 4753 4498 3979 162 27 73 chr3 131764694 131765571 -86271587 - L1MB7 LINE L1 0 6184 5348 3790 207 38 16 chr3 131765547 131766490 -86270668 - L1ME LINE L1 -1085 5061 4098 * 8115 219 22 2 chr3 131766496 131768057 -86269101 + L1M2 LINE L1 1 1593 -5256 624 118 0 0 chr3 131768057 131768142 -86269016 + AluY SINE Alu 213 297 -14 6906 169 48 41 chr3 131768143 131769774 -86267384 + L1M2 LINE L1 1586 3237 -3611 269 200 78 33 chr3 131769743 131769833 -86267325 + L1M2 LINE L1 3999 4092 -2756 * 571 100 0 0 chr3 131769830 131769910 -86267248 + L1M1 LINE L1 5545 5624 -680 869 159 159 11 chr3 131769911 131770087 -86267071 + MSTB1 LTR MaLR 226 427 -5 2926 166 64 16 chr3 131770092 131770129 -86267029 - L1 LINE L1 -2155 3991 3957 1849 171 26 3 chr3 131770129 131770434 -86266724 - AluJb SINE Alu 0 312 1 2926 166 64 16 chr3 131770434 131771004 -86266154 - L1 LINE L1 -2189 3957 3355 1125 250 20 99 chr3 131771007 131771365 -86265793 - L1M4 LINE L1 -6118 424 105 2220 96 0 0 chr3 131771365 131771683 -86265475 - AluSq SINE Alu 0 322 5 1125 250 20 99 chr3 131771683 131771767 -86265391 - L1M4 LINE L1 -6437 105 16 10899 146 19 21 chr3 131771809 131772836 -86264322 - L1MA3 LINE L1 0 6305 5277 2487 96 0 0 chr3 131772836 131773148 -86264010 - AluSx SINE Alu 0 312 1 10899 146 19 21 chr3 131773148 131775055 -86262103 - L1MA3 LINE L1 -1028 5277 3360 1414 195 161 10 chr3 131775609 131775993 -86261165 - L1ME3A LINE L1 -41 6129 5688 16669 158 11 6 chr3 131775998 131780074 -86257084 - L1MA2 LINE L1 0 7723 3628 3072 100 5 0 chr3 131780068 131780516 -86256642 - L1MA2 LINE L1 -4704 2861 2412 * 10758 163 17 13 chr3 131780517 131782345 -86254813 - L1MA2 LINE L1 -5712 1853 19 973 233 66 0 chr3 131782349 131782577 -86254581 - L1ME3A LINE L1 -465 5705 5463 695 289 39 1 chr3 131782627 131782860 -86254298 - L1ME3A LINE L1 -221 5949 5718 2137 120 17 0 chr3 131782926 131783218 -86253940 + AluSc SINE Alu 1 297 -12 181 348 114 21 chr3 131783274 131783564 -86253594 - L3b LINE CR1 -165 1418 1102 756 149 75 0 chr3 131784272 131784406 -86252752 + MER5A DNA MER1_type 2 145 -44 1076 196 10 5 chr3 131784530 131784729 -86252429 - AluJo SINE Alu -24 288 89 1041 250 32 0 chr3 131785946 131786162 -86250996 + MER58A DNA MER1_type 1 223 -1 259 261 148 0 chr3 131786943 131787031 -86250127 - MER96 DNA MER1_type? -2 173 73 2356 172 50 7 chr3 131787067 131787527 -86249631 - MER90 LTR ERV1 -95 480 1 377 338 8 0 chr3 131787549 131787682 -86249476 - MIR3 SINE MIR -1 207 74 228 297 157 53 chr3 131787707 131788121 -86249037 + L2 LINE L2 2804 3260 -12 4178 189 27 14 chr3 131789116 131790815 -86246343 - L1 LINE L1 -2932 4633 2919 378 0 0 0 chr3 131790815 131790857 -86246301 + (TCTCCC)n Simple_repeat Simple_repeat 1 42 0 5411 74 47 45 chr3 131790857 131792055 -86245103 + SVA Other Other 57 868 -592 6824 55 17 49 chr3 131792068 131793053 -86244105 + SVA Other Other 433 1386 0 17434 139 16 39 chr3 131793058 131793144 -86244014 - L1 LINE L1 -4638 2927 2841 1985 138 3 0 chr3 131793144 131793473 -86243685 - AluSx SINE Alu 0 330 1 17434 139 16 39 chr3 131793473 131793587 -86243571 - L1 LINE L1 -4724 2841 2726 1811 133 4 0 chr3 131793587 131793850 -86243308 - AluSx SINE Alu -13 299 36 17434 139 16 39 chr3 131793850 131795567 -86241591 - L1 LINE L1 -4839 2726 1095 2007 132 10 0 chr3 131795567 131795856 -86241302 - AluSq SINE Alu -1 312 21 17434 139 16 39 chr3 131795856 131796846 -86240312 - L1 LINE L1 -6470 1095 84 3779 84 4 25 chr3 131796846 131797357 -86239801 - LTR3b LTR ERVK 0 500 1 381 143 71 0 chr3 131797357 131797427 -86239731 - L1 LINE L1 -7476 89 15 377 312 87 31 chr3 131797606 131798056 -86239102 - L1 LINE L1 -2908 3238 2752 2317 34 0 11 chr3 131798104 131798371 -86238787 - L1PA4 LINE L1 0 6155 5892 2180 98 35 6 chr3 131798422 131798810 -86238348 - LTR7 LTR ERV1 0 450 1 14374 133 39 0 chr3 131799311 131801522 -86235636 - Tigger1 DNA MER2_type 0 2418 122 836 219 67 0 chr3 131801611 131801775 -86235383 + FAM SINE Alu 1 175 0 531 193 13 73 chr3 131801791 131801941 -86235217 - MER69 DNA AcHobo 0 2526 2386 365 212 15 0 chr3 131802060 131802126 -86235032 - MER69 DNA AcHobo -2459 67 1 254 304 233 43 chr3 131802129 131802518 -86234640 + L3 LINE CR1 822 1314 -263 6669 83 39 5 chr3 131802518 131803926 -86233232 + L1PA11 LINE L1 4730 6174 0 254 304 233 43 chr3 131803926 131803999 -86233159 + L3 LINE CR1 1314 1372 -205 629 211 44 49 chr3 131804002 131804206 -86232952 - L2 LINE L2 -4 3309 3107 2542 251 50 49 chr3 131804206 131804482 -86232676 + L1ME3A LINE L1 4338 4612 -1558 243 0 0 0 chr3 131804482 131804509 -86232649 + (TG)n Simple_repeat Simple_repeat 1 27 0 2542 251 50 49 chr3 131804509 131805113 -86232045 + L1ME3A LINE L1 4612 5214 -956 601 191 31 6 chr3 131805113 131805275 -86231883 + L1MA7 LINE L1 6126 6291 0 2542 251 50 49 chr3 131805275 131805546 -86231612 + L1ME3A LINE L1 5214 5483 -687 2342 89 6 16 chr3 131805546 131805861 -86231297 - AluSp SINE Alu -1 312 1 2542 251 50 49 chr3 131805861 131806358 -86230800 + L1ME3A LINE L1 5483 5990 -180 2376 73 0 0 chr3 131806672 131806958 -86230200 + AluY SINE Alu 17 302 -9 1252 112 0 0 chr3 131806958 131807127 -86230031 + AluSg/x SINE Alu 133 301 -9 1359 286 104 20 chr3 131807243 131807356 -86229802 - L2 LINE L2 -195 3118 3016 1856 100 4 0 chr3 131807356 131807596 -86229562 + AluSg SINE Alu 58 298 -12 1359 286 104 20 chr3 131807596 131808089 -86229069 - L2 LINE L2 -297 3016 2455 187 234 43 0 chr3 131808823 131808870 -86228288 - L3 LINE CR1 -3 1574 1526 1252 249 46 24 chr3 131808999 131809457 -86227701 + MER113 DNA MER1_type? 54 521 0 381 336 50 0 chr3 131809457 131809597 -86227561 + MIR SINE MIR 9 155 -107 370 303 180 45 chr3 131809612 131809879 -86227279 - L3 LINE CR1 -470 1107 805 278 250 185 0 chr3 131810042 131810150 -86227008 - MIR SINE MIR -14 248 121 272 283 66 49 chr3 131810336 131810580 -86226578 - L1ME LINE L1 -303 5818 5571 204 292 98 77 chr3 131810672 131810946 -86226212 - L2 LINE L2 -1 3271 2992 26 30 0 0 chr3 131811413 131811446 -86225712 + GC_rich Low_complexity Low_complexity 1 33 0 383 313 132 24 chr3 131813611 131813899 -86223259 - L2 LINE L2 0 3313 2995 443 306 48 121 chr3 131814512 131814966 -86222192 - L2 LINE L2 -1 3271 2851 407 282 129 18 chr3 131814972 131815142 -86222016 + MIR SINE MIR 7 195 -67 544 320 89 36 chr3 131815146 131815505 -86221653 - L2 LINE L2 -498 2816 2439 201 74 0 0 chr3 131815726 131815753 -86221405 + (TC)n Simple_repeat Simple_repeat 2 28 0 340 251 68 92 chr3 131816323 131816486 -86220672 + MIR SINE MIR 86 244 -18 746 294 10 5 chr3 131817523 131817724 -86219434 + MIR SINE MIR 2 203 -59 338 274 66 0 chr3 131817730 131817836 -86219322 + L2 LINE L2 3160 3272 0 218 200 0 0 chr3 131817836 131817876 -86219282 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 318 272 44 91 chr3 131817928 131818120 -86219038 - MIR SINE MIR -62 146 20 2327 112 0 6 chr3 131818422 131818736 -86218422 - AluSx SINE Alu 0 312 1 628 269 11 5 chr3 131819098 131819284 -86217874 + L1ME LINE L1 5596 5782 -339 678 302 15 15 chr3 131819294 131819496 -86217662 + MIR SINE MIR 2 203 -59 414 333 94 6 chr3 131819809 131819968 -86217190 - MER5A DNA MER1_type 0 189 17 281 24 49 0 chr3 131820317 131820358 -86216800 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2059 125 0 0 chr3 131820369 131820641 -86216517 - AluSx SINE Alu -40 272 1 215 200 117 17 chr3 131821044 131821104 -86216054 - MIR3 SINE MIR -27 181 116 201 312 130 0 chr3 131821437 131821514 -86215644 + L2 LINE L2 3137 3223 -49 304 170 20 30 chr3 131822068 131822168 -86214990 + CT-rich Low_complexity Low_complexity 3 101 0 604 324 66 0 chr3 131822700 131822913 -86214245 - MIR SINE MIR -14 248 22 1133 256 26 14 chr3 131822974 131823321 -86213837 + L1ME4a LINE L1 5519 5869 -252 1498 101 5 18 chr3 131823641 131823880 -86213278 - AluJb SINE Alu 0 312 84 1840 133 10 10 chr3 131823931 131824232 -86212926 - L1MA9 LINE L1 -5 6307 6007 486 287 71 28 chr3 131825333 131825657 -86211501 + L1ME4a LINE L1 5619 5956 -165 21 36 0 0 chr3 131825887 131825915 -86211243 + AT_rich Low_complexity Low_complexity 1 28 0 2194 108 16 43 chr3 131826798 131827006 -86210152 + L1MA5 LINE L1 5937 6149 -151 211 28 56 0 chr3 131827006 131827042 -86210116 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2075 125 7 3 chr3 131827044 131827331 -86209827 - AluSp SINE Alu -25 288 1 2194 108 16 43 chr3 131827331 131827489 -86209669 + L1MA5 LINE L1 6150 6296 -4 882 277 127 32 chr3 131827562 131828120 -86209038 - L1ME3A LINE L1 -208 5962 5315 6846 69 9 11 chr3 131828124 131829011 -86208147 - SVA Other Other 0 1386 502 1511 132 25 0 chr3 131829085 131829328 -86207830 + L1P LINE L1 4730 4978 -1168 12845 201 25 19 chr3 131829442 131832805 -86204353 - L1P4 LINE L1 -465 5701 2326 304 260 128 44 chr3 131833374 131833522 -86203636 - MIR SINE MIR -71 191 33 2207 111 3 0 chr3 131834243 131834532 -86202626 - AluSx SINE Alu -21 291 2 817 272 188 48 chr3 131835932 131836583 -86200575 + L2 LINE L2 2565 3313 0 630 326 56 42 chr3 131836582 131836664 -86200494 + L2 LINE L2 2453 2532 -782 * 2230 78 3 33 chr3 131836664 131836971 -86200187 - AluSc SINE Alu -11 298 1 630 326 56 42 chr3 131836971 131837296 -86199862 + L2 LINE L2 2532 2866 -448 280 229 131 33 chr3 131837380 131837502 -86199656 - MIR SINE MIR 0 262 129 731 273 42 83 chr3 131837617 131837824 -86199334 + L2 LINE L2 2921 3104 -209 1797 137 27 10 chr3 131837824 131838116 -86199042 + AluJo SINE Alu 1 297 -15 731 273 42 83 chr3 131838116 131838318 -86198840 + L2 LINE L2 3104 3313 0 313 229 144 8 chr3 131838506 131838624 -86198534 - MIR SINE MIR 0 262 129 297 265 106 29 chr3 131839106 131839276 -86197882 - MIR SINE MIR 0 262 80 394 284 102 30 chr3 131839401 131839598 -86197560 + MARNA DNA Mariner 178 388 -198 241 271 34 0 chr3 131839600 131839659 -86197499 + HAL1b LINE L1 1198 1258 -90 306 295 8 47 chr3 131839878 131840007 -86197151 + MARNA DNA Mariner 425 548 -38 430 301 124 35 chr3 131841621 131841967 -86195191 + L3 LINE CR1 1041 1417 -160 237 305 189 0 chr3 131841996 131842160 -86194998 + L3 LINE CR1 1381 1575 -2 2451 87 0 0 chr3 131842283 131842581 -86194577 + AluSp SINE Alu 1 298 -15 12964 118 7 11 chr3 131842653 131843483 -86193675 - L1PA10 LINE L1 -5 6163 5331 1798 174 0 25 chr3 131843483 131843799 -86193359 - AluSx SINE Alu -4 308 1 12964 118 7 11 chr3 131843799 131845510 -86191648 - L1PA10 LINE L1 -837 5331 3618 2358 126 42 22 chr3 131845510 131845867 -86191291 + THE1B LTR MaLR 1 364 0 12964 118 7 11 chr3 131845867 131845975 -86191183 - L1PA10 LINE L1 -2550 3618 3511 755 146 215 19 chr3 131846010 131846168 -86190990 + MER5A DNA MER1_type 1 189 0 674 278 88 50 chr3 131846551 131846891 -86190267 + L1M4 LINE L1 3923 4282 -1864 470 198 226 0 chr3 131846891 131846997 -86190161 + FLAM_A SINE Alu 1 130 -3 674 278 88 50 chr3 131846997 131847055 -86190103 + L1M4 LINE L1 4282 4336 -1810 370 192 0 0 chr3 131847135 131847208 -86189950 - L1 LINE L1 -3098 3048 2976 591 225 8 8 chr3 131847225 131847354 -86189804 + L1 LINE L1 2492 2620 -3526 2597 186 19 60 chr3 131847490 131848077 -86189081 - L1 LINE L1 -3098 3048 2486 4394 183 31 16 chr3 131848081 131849033 -86188125 + L1 LINE L1 3065 4031 -2115 626 208 33 8 chr3 131849136 131849256 -86187902 + MER2 DNA MER2_type 223 345 0 343 248 120 0 chr3 131849256 131849373 -86187785 - L1ME4a LINE L1 -24 6097 5967 748 118 92 33 chr3 131849400 131849552 -86187606 + L1PA5 LINE L1 5994 6154 0 218 250 18 18 chr3 131850007 131850063 -86187095 + L3 LINE CR1 1520 1575 -2 482 215 192 40 chr3 131850502 131850679 -86186479 - MER63A DNA MER1_type -4 206 3 282 191 170 11 chr3 131851112 131851206 -86185952 + MER103 DNA DNA 57 165 -1 320 333 44 0 chr3 131852835 131852949 -86184209 - L2 LINE L2 -9 3263 3145 401 264 75 0 chr3 131853014 131853120 -86184038 - L2 LINE L2 0 3313 3200 326 297 87 97 chr3 131853180 131853375 -86183783 + L2 LINE L2 3080 3272 0 323 284 214 20 chr3 131853746 131853947 -86183211 - MLT1J LTR MaLR -46 465 226 211 289 157 25 chr3 131854491 131854612 -86182546 + MIR SINE MIR 120 256 -6 247 224 53 66 chr3 131854648 131854724 -86182434 - L2 LINE L2 -5 3267 3193 270 219 55 14 chr3 131854795 131854868 -86182290 + L2 LINE L2 3139 3214 -58 436 278 135 8 chr3 131855283 131855416 -86181742 + MER91A DNA MER1_type 22 171 -25 234 311 107 51 chr3 131855449 131855626 -86181532 - L2 LINE L2 -244 3028 2842 391 237 82 0 chr3 131855714 131855811 -86181347 - MIR SINE MIR -145 117 13 240 388 0 0 chr3 131855836 131855916 -86181242 - L2 LINE L2 -645 2669 2590 1654 192 3 19 chr3 131855916 131856233 -86180925 + AluJb SINE Alu 1 312 0 822 156 11 22 chr3 131856249 131856428 -86180730 + GA-rich Low_complexity Low_complexity 3 179 0 419 336 138 29 chr3 131856467 131856881 -86180277 - L2 LINE L2 -711 2603 2145 2138 133 0 3 chr3 131857145 131857447 -86179711 - AluSq SINE Alu -12 301 1 180 111 0 0 chr3 131858695 131858722 -86178436 + (T)n Simple_repeat Simple_repeat 1 27 0 635 338 79 15 chr3 131858784 131859175 -86177983 - L3 LINE CR1 -155 1422 1007 31 44 0 0 chr3 131859523 131859568 -86177590 + AT_rich Low_complexity Low_complexity 1 45 0 243 170 140 70 chr3 131859972 131860072 -86177086 - L1ME4a LINE L1 -16 6105 5999 372 248 131 56 chr3 131860409 131860512 -86176646 - MIR SINE MIR -15 247 153 2202 125 0 10 chr3 131860512 131860825 -86176333 - AluSx SINE Alu -2 310 1 372 248 131 56 chr3 131860825 131860935 -86176223 - MIR SINE MIR -109 153 18 302 208 43 0 chr3 131862052 131862148 -86175010 + L1ME1 LINE L1 5691 5793 -328 23 54 0 0 chr3 131862179 131862216 -86174942 + AT_rich Low_complexity Low_complexity 1 37 0 180 0 0 0 chr3 131862263 131862283 -86174875 + (T)n Simple_repeat Simple_repeat 1 20 0 799 232 12 6 chr3 131862672 131862836 -86174322 - MER5B DNA MER1_type -13 165 1 1955 40 0 0 chr3 131863533 131863757 -86173401 - AluY SINE Alu -11 300 77 952 44 0 0 chr3 131864494 131864607 -86172551 + L1PA5 LINE L1 6042 6154 0 195 42 0 0 chr3 131865387 131865411 -86171747 + (CTCA)n Simple_repeat Simple_repeat 4 27 0 291 244 93 95 chr3 131867166 131867378 -86169780 + MIR SINE MIR 53 261 -1 426 310 76 14 chr3 131868294 131868439 -86168719 - MLT1K LTR MaLR -415 173 20 263 295 248 0 chr3 131869354 131869459 -86167699 + L2 LINE L2 3142 3272 0 378 241 11 0 chr3 131869522 131869609 -86167549 - MLT1K LTR MaLR -355 233 146 789 148 0 0 chr3 131870324 131870446 -86166712 - AluSg/x SINE Alu -2 310 189 2088 141 0 3 chr3 131870627 131870933 -86166225 + AluSg SINE Alu 1 305 -5 720 222 155 17 chr3 131871404 131871696 -86165462 + L1ME1 LINE L1 5845 6334 0 666 274 59 39 chr3 131871934 131872189 -86164969 + MIR SINE MIR 3 262 0 301 355 19 9 chr3 131872190 131872297 -86164861 - MIR SINE MIR -67 141 34 316 296 0 41 chr3 131872535 131872633 -86164525 + L2 LINE L2 3220 3313 0 5348 231 43 26 chr3 131873132 131873750 -86163408 - L1M4 LINE L1 -1996 4150 3544 2137 128 0 0 chr3 131873750 131874046 -86163112 - AluSx SINE Alu -16 296 1 5348 231 43 26 chr3 131874046 131874978 -86162180 - L1M4 LINE L1 -2602 3544 2574 226 369 70 25 chr3 131875109 131875266 -86161892 - L2 LINE L2 -2 3270 3107 3484 166 58 12 chr3 131875487 131875996 -86161162 - L1MB8 LINE L1 0 6178 5633 315 0 0 0 chr3 131875996 131876031 -86161127 + (CA)n Simple_repeat Simple_repeat 1 35 0 3484 166 58 12 chr3 131876031 131876161 -86160997 - L1MB8 LINE L1 -545 5633 5510 191 288 144 30 chr3 131876548 131876680 -86160478 + L2 LINE L2 3165 3311 -2 810 231 20 10 chr3 131877185 131877380 -86159778 + MIR SINE MIR 60 256 -6 930 122 7 14 chr3 131878524 131878663 -86158495 + AluJo SINE Alu 1 138 -174 414 246 127 8 chr3 131878901 131879027 -86158131 + MIR SINE MIR 84 224 -38 369 241 0 47 chr3 131879531 131879685 -86157473 - MER91B DNA MER1_type 0 190 1 346 325 34 10 chr3 131880342 131880491 -86156667 + MER20B DNA MER1_type 63 219 0 2211 116 7 0 chr3 131880948 131881251 -86155907 - AluSx SINE Alu -7 305 1 418 314 43 38 chr3 131882164 131882349 -86154809 - MIR3 SINE MIR -21 187 2 331 208 99 40 chr3 131882640 131882741 -86154417 + MIR SINE MIR 3 109 -153 1205 272 91 35 chr3 131882767 131883227 -86153931 + MLT1J LTR MaLR 4 489 -22 670 287 47 32 chr3 131883239 131883580 -86153578 + L1M4 LINE L1 3611 3956 -2190 2032 90 25 11 chr3 131883696 131883973 -86153185 - L1PA10 LINE L1 -2 6166 5886 2353 109 15 0 chr3 131883974 131884313 -86152845 + L1P LINE L1 3849 4192 -1954 192 77 0 0 chr3 131884485 131884511 -86152647 + (TTCCC)n Simple_repeat Simple_repeat 5 30 0 236 244 106 49 chr3 131885016 131885071 -86152087 + L1M4b LINE L1 94 144 -6715 209 30 61 0 chr3 131885071 131885104 -86152054 + T-rich Low_complexity Low_complexity 2 36 0 236 244 106 49 chr3 131885104 131885171 -86151987 + L1M4b LINE L1 144 223 -6636 1212 262 72 19 chr3 131885180 131885706 -86151452 - L1M4 LINE L1 -1877 4269 3716 228 200 0 0 chr3 131885756 131885806 -86151352 + (TG)n Simple_repeat Simple_repeat 2 51 0 208 256 239 0 chr3 131886530 131886647 -86150511 + MIR SINE MIR 113 257 -5 183 211 0 0 chr3 131886615 131886653 -86150505 + L2 LINE L2 3271 3308 -5 * 663 246 60 0 chr3 131886698 131886865 -86150293 - MIR SINE MIR -64 198 22 200 304 87 0 chr3 131886869 131886938 -86150220 + L2 LINE L2 3198 3272 0 22 0 0 0 chr3 131887183 131887205 -86149953 + AT_rich Low_complexity Low_complexity 1 22 0 185 247 35 82 chr3 131887475 131887560 -86149598 + L2 LINE L2 1404 1484 -1830 967 259 0 29 chr3 131890155 131890398 -86146760 + MIR SINE MIR 27 262 0 2167 203 34 32 chr3 131891865 131892368 -86144790 + MLT1D LTR MaLR 2 505 0 1862 140 6 22 chr3 131893698 131894012 -86143146 + AluJb SINE Alu 1 309 -3 6717 26 0 0 chr3 131894633 131895399 -86141759 - L1PA4 LINE L1 0 6155 5390 1846 169 0 3 chr3 131895795 131896090 -86141068 + AluJb SINE Alu 1 294 -18 22 0 0 0 chr3 131896179 131896201 -86140957 + AT_rich Low_complexity Low_complexity 1 22 0 453 306 21 0 chr3 131896272 131896416 -86140742 - LTR67 LTR ERVL -4 553 407 1508 134 17 13 chr3 131897102 131897341 -86139817 + LTR32 LTR ERVL 232 471 0 287 199 61 84 chr3 131897355 131897486 -86139672 + L1ME4a LINE L1 5971 6098 -23 497 206 0 48 chr3 131897570 131897696 -86139462 - L1MC4 LINE L1 -1 8041 7922 504 243 30 55 chr3 131897732 131897934 -86139224 + L1MC5 LINE L1 7729 7925 -36 237 196 0 0 chr3 131898787 131898838 -86138320 + GA-rich Low_complexity Low_complexity 3 53 0 1942 188 78 36 chr3 131899885 131900331 -86136827 + MER31B LTR ERV1 2 466 0 2034 55 0 16 chr3 131901354 131901611 -86135547 + AluY SINE Alu 27 279 -32 1181 175 75 51 chr3 131901822 131902261 -86134897 + MLT1D LTR MaLR 4 495 -10 205 235 210 0 chr3 131902273 131902354 -86134804 + MIR3 SINE MIR 102 199 -9 495 48 0 0 chr3 131902593 131902655 -86134503 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 420 302 65 8 chr3 131902753 131902998 -86134160 + L1MC4 LINE L1 7712 7970 -72 63 87 0 0 chr3 131903719 131903880 -86133278 + AT_rich Low_complexity Low_complexity 1 161 0 2147 123 0 16 chr3 131904042 131904352 -86132806 + AluSx SINE Alu 1 305 -7 1491 148 30 70 chr3 131904621 131904919 -86132239 - AluJo SINE Alu -26 286 1 304 254 9 27 chr3 131905603 131905849 -86131309 + L1MC4 LINE L1 6785 7027 -1015 6261 101 40 10 chr3 131905849 131906797 -86130361 - L1PA13 LINE L1 -5 6158 5199 304 254 9 27 chr3 131906797 131906833 -86130325 + L1MC4 LINE L1 7027 7062 -980 512 256 28 11 chr3 131906876 131907052 -86130106 + L1MC5 LINE L1 6961 7139 -822 339 171 57 23 chr3 131907092 131907180 -86129978 + L1MA10 LINE L1 6241 6331 -3 24 53 0 0 chr3 131907291 131907329 -86129829 + AT_rich Low_complexity Low_complexity 1 38 0 522 243 80 130 chr3 131907351 131907911 -86129247 + L1 LINE L1 4206 4792 -1354 2122 113 30 7 chr3 131907911 131908213 -86128945 + AluSx SINE Alu 1 309 -3 522 243 80 130 chr3 131908213 131908479 -86128679 + L1 LINE L1 4792 5070 -1076 1808 170 3 7 chr3 131908479 131908785 -86128373 + AluJo SINE Alu 3 307 -5 522 243 80 130 chr3 131908785 131908835 -86128323 + L1 LINE L1 5070 5121 -1025 2225 96 48 0 chr3 131908835 131909128 -86128030 + AluSg SINE Alu 1 307 -3 522 243 80 130 chr3 131909128 131909331 -86127827 + L1 LINE L1 5121 5233 -913 1437 170 60 89 chr3 131910341 131910393 -86126765 - MER58B DNA MER1_type -2079 341 289 795 214 7 0 chr3 131910393 131910547 -86126611 + FRAM SINE Alu 1 155 -11 1437 170 60 89 chr3 131910547 131910841 -86126317 - MER58B DNA MER1_type -2131 289 5 2540 176 39 149 chr3 131912645 131913201 -86123957 + LTR8 LTR ERV1 1 617 -74 2358 93 0 0 chr3 131913201 131913490 -86123668 + AluSc SINE Alu 1 289 -20 2540 176 39 149 chr3 131913490 131913545 -86123613 + LTR8 LTR ERV1 617 511 -180 2269 64 64 0 chr3 131913545 131913826 -86123332 + AluSp SINE Alu 2 300 -13 2540 176 39 149 chr3 131913826 131913990 -86123168 + LTR8 LTR ERV1 510 691 0 251 125 0 0 chr3 131913990 131914030 -86123128 + L1ME4a LINE L1 6079 6118 -3 551 98 0 12 chr3 131914713 131914795 -86122363 - MLT1C LTR MaLR -386 81 1 350 371 109 2 chr3 131914902 131915322 -86121836 - L2 LINE L2 -493 2821 2357 620 213 47 24 chr3 131915635 131915804 -86121354 - MIR SINE MIR -12 250 78 615 282 12 0 chr3 131915920 131916090 -86121068 + L1ME1 LINE L1 5957 6128 -38 22 0 0 0 chr3 131916106 131916128 -86121030 + AT_rich Low_complexity Low_complexity 1 22 0 417 183 153 46 chr3 131917070 131917201 -86119957 - L1ME3 LINE L1 -1 6161 6017 2208 187 120 94 chr3 131917224 131918328 -86118830 - L1ME3 LINE L1 -212 5952 4855 545 174 11 0 chr3 131918556 131918648 -86118510 - Tigger5 DNA MER2_type 0 2323 2231 287 163 0 0 chr3 131918653 131918696 -86118462 - Tigger5 DNA MER2_type -2268 55 13 436 163 35 23 chr3 131918696 131918782 -86118376 - Tigger5 DNA MER2_type 0 2323 2237 293 222 0 0 chr3 131918792 131918846 -86118312 - Tigger5 DNA MER2_type -2268 55 2 250 26 51 0 chr3 131918846 131918885 -86118273 + (TTC)n Simple_repeat Simple_repeat 1 41 0 205 393 7 0 chr3 131919594 131919744 -86117414 + (CCA)n Simple_repeat Simple_repeat 1 151 0 377 20 20 0 chr3 131920658 131920708 -86116450 + (CA)n Simple_repeat Simple_repeat 1 51 0 2195 126 37 0 chr3 131921402 131921727 -86115431 - MER1B DNA MER1_type 0 337 1 7252 122 37 4 chr3 131922933 131924109 -86113049 + L1M1 LINE L1 1543 2757 -4808 1705 139 4 33 chr3 131924115 131924389 -86112769 + AluSx SINE Alu 36 301 -11 445 255 138 76 chr3 131924470 131924811 -86112347 - L2 LINE L2 0 3313 2952 546 272 83 12 chr3 131924932 131925270 -86111888 + L1ME1 LINE L1 4966 5327 -819 225 0 0 0 chr3 131925272 131925297 -86111861 + (TCTCCC)n Simple_repeat Simple_repeat 1 25 0 5976 66 22 64 chr3 131925302 131926207 -86110951 + SVA Other Other 2 868 -518 2407 81 7 0 chr3 131926897 131927192 -86109966 - AluSc SINE Alu -12 297 1 228 308 0 0 chr3 131927480 131927558 -86109600 + L1ME1 LINE L1 5701 5778 -2030 242 231 51 115 chr3 131930099 131930255 -86106903 + MIR SINE MIR 61 206 -56 6962 175 16 10 chr3 131930953 131932497 -86104661 - L1M1 LINE L1 -743 5403 3996 31 99 0 0 chr3 131932585 131932686 -86104472 + GC_rich Low_complexity Low_complexity 1 101 0 24 32 0 0 chr3 131932719 131932750 -86104408 + GC_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr3 131932803 131932831 -86104327 + GC_rich Low_complexity Low_complexity 1 28 0 234 287 9 56 chr3 131933405 131933513 -86103645 - MARNA DNA Mariner -446 140 38 2075 144 0 3 chr3 131935431 131935737 -86101421 + AluSg SINE Alu 1 305 -5 706 222 155 17 chr3 131936209 131936501 -86100657 + L1ME1 LINE L1 5845 6334 0 3915 171 35 14 chr3 131937245 131938085 -86099073 - L1M1 LINE L1 -2225 3921 3065 259 220 0 0 chr3 131938089 131938139 -86099019 + L1 LINE L1 2486 2535 -3611 774 229 55 25 chr3 131938933 131939208 -86097950 + MER113 DNA MER1_type? 54 336 -185 3842 138 24 79 chr3 131939768 131940587 -86096571 + LTR1 LTR ERV1 12 785 0 239 237 88 18 chr3 131941113 131941227 -86095931 + L1M1 LINE L1 1732 1853 -5712 2825 120 7 0 chr3 131941231 131941674 -86095484 + L1M1 LINE L1 2416 2861 -4704 * 3289 225 15 12 chr3 131941651 131942487 -86094671 + L1M1 LINE L1 3610 4459 -3106 706 149 75 0 chr3 131943311 131943445 -86093713 + MER5A DNA MER1_type 2 145 -44 871 207 36 5 chr3 131943569 131943762 -86093396 - AluJo SINE Alu -24 288 90 430 319 96 33 chr3 131944220 131944555 -86092603 + L2 LINE L2 2461 2816 -498 345 288 129 18 chr3 131944559 131944729 -86092429 - MIR SINE MIR -67 195 7 208 341 23 61 chr3 131944739 131944953 -86092205 + L2 LINE L2 2854 3059 -213 224 329 0 0 chr3 131945366 131945451 -86091707 + (CGAG)n Simple_repeat Simple_repeat 2 86 0 237 254 34 51 chr3 131945476 131945653 -86091505 + (CGGG)n Simple_repeat Simple_repeat 2 175 0 213 158 35 53 chr3 131945680 131945737 -86091421 + G-rich Low_complexity Low_complexity 3 58 0 202 259 0 0 chr3 131945847 131945901 -86091257 + G-rich Low_complexity Low_complexity 1 54 0 213 43 64 21 chr3 131945948 131945995 -86091163 + G-rich Low_complexity Low_complexity 2 50 0 340 267 0 22 chr3 131946284 131946374 -86090784 - MER91B DNA MER1_type 0 190 103 2001 127 14 0 chr3 131946893 131947177 -86089981 - AluSq SINE Alu -5 308 21 1971 189 48 16 chr3 131947177 131947617 -86089541 - L1M1 LINE L1 -6473 1092 639 1177 154 4 57 chr3 131948007 131948042 -86089116 - L1MA5 LINE L1 -130 6170 6135 2064 129 7 3 chr3 131948042 131948367 -86088791 + AluSp SINE Alu 1 326 0 1177 154 4 57 chr3 131948367 131948575 -86088583 - L1MA5 LINE L1 -165 6135 5937 3149 108 36 16 chr3 131949102 131949845 -86087313 - L1P4 LINE L1 -575 5599 4850 30 164 0 0 chr3 131949845 131949912 -86087246 + GC_rich Low_complexity Low_complexity 1 67 0 191 275 14 43 chr3 131949912 131950050 -86087108 + (CCCCG)n Simple_repeat Simple_repeat 4 137 0 21 200 0 0 chr3 131950050 131950085 -86087073 + GC_rich Low_complexity Low_complexity 1 35 0 1123 171 16 5 chr3 132050110 132050297 -85986861 + AluJb SINE Alu 111 299 -13 585 283 147 67 chr3 132050301 132050976 -85986182 + L2 LINE L2 1894 2622 -692 1020 72 58 0 chr3 132050979 132051169 -85985989 - AluY SINE Alu 0 333 136 3045 84 40 46 chr3 132051270 132051724 -85985434 + L1PA8 LINE L1 5713 6163 -9 2111 139 17 0 chr3 132052405 132052700 -85984458 + AluSx SINE Alu 6 305 -7 185 349 0 58 chr3 132053241 132053327 -85983831 - MIR3 SINE MIR -3 205 125 2169 75 0 34 chr3 132053812 132054105 -85983053 + AluY SINE Alu 29 311 0 1995 154 3 6 chr3 132054169 132054481 -85982677 + AluJb SINE Alu 1 311 -1 2237 102 3 0 chr3 132054512 132054820 -85982338 + AluSp SINE Alu 3 311 0 417 101 121 121 chr3 132054839 132054885 -85982273 + L1ME4a LINE L1 5972 6017 -104 2266 88 3 23 chr3 132054885 132055193 -85981965 + AluSq SINE Alu 1 302 -11 417 101 121 121 chr3 132055193 132055295 -85981863 + L1ME4a LINE L1 6016 6120 -1 535 333 76 13 chr3 132055474 132055711 -85981447 - L2 LINE L2 -44 3228 2977 252 346 85 43 chr3 132055704 132055915 -85981243 - L2 LINE L2 -453 2861 2642 * 315 0 0 0 chr3 132056213 132056248 -85980910 + (TG)n Simple_repeat Simple_repeat 1 35 0 348 186 0 0 chr3 132056608 132056667 -85980491 + L2 LINE L2 3205 3263 -9 252 315 0 0 chr3 132058031 132058104 -85979054 + MIR SINE MIR 189 261 -1 1879 154 14 81 chr3 132058262 132058632 -85978526 + MER47B DNA MER2_type 2 346 -72 1789 158 7 35 chr3 132059496 132059806 -85977352 + AluJo SINE Alu 1 301 -11 206 280 0 0 chr3 132060275 132060325 -85976833 + GA-rich Low_complexity Low_complexity 4 53 0 186 300 124 34 chr3 132060556 132060789 -85976369 + L2 LINE L2 1803 2056 -1258 208 271 45 30 chr3 132061005 132061138 -85976020 - L2 LINE L2 -1248 2066 1932 394 284 104 37 chr3 132061377 132061662 -85975496 + L1M3 LINE L1 4029 4331 -1815 3497 246 140 51 chr3 132061662 132062471 -85974687 + L1MEc LINE L1 34 770 -5626 2227 99 3 23 chr3 132062471 132062773 -85974385 + AluSq SINE Alu 11 306 -7 3497 246 140 51 chr3 132062773 132063412 -85973746 + L1MEc LINE L1 770 1636 -4760 1674 202 0 17 chr3 132063412 132063714 -85973444 + AluJo SINE Alu 2 298 -14 3497 246 140 51 chr3 132063714 132063847 -85973311 + L1MEc LINE L1 1636 1756 -4640 700 193 13 0 chr3 132063907 132064057 -85973101 + L1M3 LINE L1 4669 4820 -1326 * 2312 178 27 25 chr3 132064030 132064460 -85972698 + L1M3 LINE L1 5028 5462 -709 186 43 0 0 chr3 132064460 132064483 -85972675 + (GGAAA)n Simple_repeat Simple_repeat 2 24 0 2312 178 27 25 chr3 132064483 132064706 -85972452 + L1M3 LINE L1 5462 5683 -488 1070 146 0 0 chr3 132064706 132064857 -85972301 - Tigger3(Golem) DNA MER2_type -1 3028 2878 2415 67 0 0 chr3 132065189 132065487 -85971671 - AluY SINE Alu -13 298 1 299 227 93 21 chr3 132065887 132065984 -85971174 - L1ME4a LINE L1 -5 6116 6013 476 256 85 18 chr3 132065987 132066151 -85971007 - MIR SINE MIR -79 183 9 241 225 12 12 chr3 132066467 132066547 -85970611 + CT-rich Low_complexity Low_complexity 3 82 0 775 161 73 0 chr3 132066562 132066686 -85970472 - FLAM_C SINE Alu 0 133 1 836 62 0 0 chr3 132066712 132066809 -85970349 - AluY SINE Alu -20 291 195 2166 76 0 0 chr3 132066811 132067075 -85970083 - AluSg SINE Alu -46 264 1 271 171 0 0 chr3 132067081 132067122 -85970036 - U6 snRNA snRNA -66 41 1 2320 91 0 14 chr3 132067211 132067508 -85969650 - AluSx SINE Alu -19 293 1 2237 85 11 0 chr3 132067562 132067874 -85969284 - AluSp SINE Alu 0 315 1 1823 137 4 4 chr3 132067941 132068204 -85968954 - AluJb SINE Alu -45 267 5 271 313 133 36 chr3 132068381 132068576 -85968582 + L2 LINE L2 2877 3090 -182 1458 171 0 64 chr3 132068851 132069149 -85968009 + AluJb SINE Alu 19 297 -15 221 286 48 12 chr3 132069157 132069241 -85967917 - MER5A DNA MER1_type -23 166 80 257 254 0 0 chr3 132069503 132069562 -85967596 + MIR SINE MIR 203 261 -1 23 0 0 0 chr3 132069607 132069630 -85967528 + AT_rich Low_complexity Low_complexity 1 23 0 807 228 126 47 chr3 132069735 132069989 -85967169 - LTR16C LTR ERVL -2 489 216 1284 187 0 63 chr3 132069989 132070257 -85966901 - AluJb SINE Alu -17 295 45 438 246 193 50 chr3 132070597 132070949 -85966209 + LTR16B LTR ERVL 1 450 0 476 186 124 50 chr3 132070952 132071113 -85966045 - MER104 DNA MER2_type -3 177 5 1720 147 6 39 chr3 132071863 132072175 -85964983 - AluJo SINE Alu -2 310 9 193 263 84 53 chr3 132073081 132073176 -85963982 - L2 LINE L2 -181 3091 2994 2212 79 14 0 chr3 132073538 132073853 -85963305 - AluY SINE Alu 0 319 1 1759 149 0 14 chr3 132074410 132074691 -85962467 - AluSq SINE Alu -36 277 1 419 260 65 7 chr3 132074692 132074846 -85962312 - L1M4 LINE L1 -2172 3974 3812 310 219 105 58 chr3 132074913 132075041 -85962117 - LTR45B LTR ERV1 0 783 358 765 183 0 0 chr3 132075042 132075162 -85961996 + AluJb SINE Alu 165 284 -28 2222 147 38 3 chr3 132075162 132075508 -85961650 - LTR45B LTR ERV1 -129 360 3 1444 197 7 19 chr3 132076054 132076323 -85960835 - AluJo SINE Alu -46 266 1 6281 136 29 26 chr3 132076439 132077333 -85959825 - L1MC1 LINE L1 0 6333 5436 1589 164 43 16 chr3 132077333 132077637 -85959521 - AluJo SINE Alu 0 312 1 6281 136 29 26 chr3 132077637 132077868 -85959290 - L1MC1 LINE L1 -897 5436 5207 683 141 91 0 chr3 132078207 132078328 -85958830 - L1MB7 LINE L1 -9 6175 6044 1024 171 12 0 chr3 132078329 132078499 -85958659 + AluJb SINE Alu 141 312 0 2043 140 34 17 chr3 132078499 132078855 -85958303 - L1MB7 LINE L1 -132 6052 5691 2407 58 3 17 chr3 132080075 132080370 -85956788 - AluY SINE Alu -20 291 1 2199 103 0 3 chr3 132080750 132081032 -85956126 - AluSx SINE Alu -27 285 5 2221 135 100 18 chr3 132081083 132081482 -85955676 - MSTB1 LTR MaLR 0 432 1 525 222 0 0 chr3 132081693 132081783 -85955375 - FLAM_A SINE Alu -52 90 1 1690 178 0 0 chr3 132081974 132082295 -85954863 - AluJb SINE Alu 0 321 1 696 250 170 0 chr3 132082664 132082888 -85954270 - MIR SINE MIR 0 262 1 1261 128 0 0 chr3 132083805 132083977 -85953181 + AluSg/x SINE Alu 124 295 -15 250 195 0 0 chr3 132084215 132084256 -85952902 - MER5A DNA MER1_type -148 41 1 491 215 58 76 chr3 132084691 132084863 -85952295 + LTR33 LTR ERVL 45 213 -308 675 228 119 15 chr3 132084898 132085100 -85952058 + LTR33 LTR ERVL 299 521 0 219 316 126 11 chr3 132085155 132085250 -85951908 + L2 LINE L2 3162 3267 -5 302 281 258 24 chr3 132085415 132085582 -85951576 - MIR SINE MIR -31 231 26 783 278 60 67 chr3 132086103 132086849 -85950309 - L1M4 LINE L1 -835 5311 4571 553 208 183 75 chr3 132087398 132087639 -85949519 - L1ME1 LINE L1 -8 6158 5892 1576 174 38 109 chr3 132087659 132087750 -85949408 - L1M4 LINE L1 -3317 2829 2733 2246 102 0 0 chr3 132087750 132088034 -85949124 + AluSx SINE Alu 1 284 -28 1576 174 38 109 chr3 132088034 132088047 -85949111 - L1M4 LINE L1 -3413 2733 2721 366 23 0 0 chr3 132088047 132088090 -85949068 + (TA)n Simple_repeat Simple_repeat 2 44 0 1576 174 38 109 chr3 132088090 132088479 -85948679 - L1M4 LINE L1 -3425 2721 2370 876 148 0 21 chr3 132088512 132088654 -85948504 - L1MB2 LINE L1 -2 6169 6031 1254 129 33 5 chr3 132088659 132088869 -85948289 - L1MB2 LINE L1 -276 5907 5692 1109 158 31 5 chr3 132088893 132089089 -85948069 + MER7A DNA MER2_type 1 199 -147 1173 237 98 50 chr3 132089203 132089434 -85947724 - L2 LINE L2 -755 2559 2341 2271 109 3 0 chr3 132089434 132089738 -85947420 - AluSc SINE Alu -4 305 1 1173 237 98 50 chr3 132089738 132089983 -85947175 - L2 LINE L2 -973 2341 2060 1407 176 68 11 chr3 132089988 132090266 -85946892 + AluSx SINE Alu 7 300 -12 1484 254 21 5 chr3 132090266 132090648 -85946510 - L2 LINE L2 -1248 2066 1679 507 149 14 0 chr3 132091531 132091605 -85945553 - FRAM SINE Alu -45 131 57 650 278 114 9 chr3 132091667 132091894 -85945264 + MIR SINE MIR 10 260 -2 2199 103 0 10 chr3 132092374 132092664 -85944494 + AluSx SINE Alu 1 287 -25 467 45 15 0 chr3 132092665 132092731 -85944427 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 212 319 0 14 chr3 132092861 132092930 -85944228 + MIR SINE MIR 7 74 -188 809 227 58 6 chr3 132092964 132093136 -85944022 + MIR SINE MIR 42 222 -40 21 0 0 0 chr3 132093184 132093205 -85943953 + AT_rich Low_complexity Low_complexity 1 21 0 5837 87 3 0 chr3 132093205 132093932 -85943226 - L1PA10 LINE L1 -4 6164 5436 2224 100 0 17 chr3 132094034 132094335 -85942823 - AluSc SINE Alu -13 296 1 2284 77 0 7 chr3 132095242 132095529 -85941629 + AluY SINE Alu 1 285 -26 2189 102 20 3 chr3 132095630 132095923 -85941235 + AluY SINE Alu 1 298 -13 275 273 71 30 chr3 132096252 132096351 -85940807 - MIR SINE MIR -125 137 35 854 265 75 39 chr3 132096685 132097017 -85940141 + Tigger8 DNA MER2_type 2 345 -321 473 311 146 18 chr3 132097139 132097358 -85939800 + MIR SINE MIR 13 259 -3 755 285 263 50 chr3 132097444 132098181 -85938977 - HAL1 LINE L1 -1602 905 12 1902 114 59 0 chr3 132098388 132098511 -85938647 + AluSx SINE Alu 1 115 -197 180 0 0 0 chr3 132098511 132098531 -85938627 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1902 114 59 0 chr3 132098531 132098679 -85938479 + AluSx SINE Alu 115 288 -24 481 244 135 27 chr3 132098986 132099172 -85937986 - MIR SINE MIR -55 207 3 2070 112 0 7 chr3 132099814 132100092 -85937066 + AluSx SINE Alu 27 302 -10 2127 139 0 7 chr3 132101334 132101668 -85935490 - AluJb SINE Alu 0 337 6 24 0 0 0 chr3 132101909 132101933 -85935225 + AT_rich Low_complexity Low_complexity 1 24 0 974 200 44 44 chr3 132102260 132102619 -85934539 - MLT1E2 LTR MaLR -220 404 8 328 253 0 0 chr3 132102625 132102700 -85934458 - L1PA15-16 LINE L1 -4357 2492 2418 639 195 18 0 chr3 132102804 132102917 -85934241 - FRAM SINE Alu -8 168 54 438 20 0 0 chr3 132102925 132102976 -85934182 + (TG)n Simple_repeat Simple_repeat 2 52 0 821 147 0 9 chr3 132102976 132103092 -85934066 - FLAM_C SINE Alu -18 115 1 1079 342 72 5 chr3 132103112 132103489 -85933669 - MER115 DNA AcHobo -266 427 26 297 344 87 72 chr3 132103772 132104106 -85933052 + L2 LINE L2 2932 3270 -2 22 35 0 0 chr3 132105056 132105085 -85932073 + AT_rich Low_complexity Low_complexity 1 29 0 2175 91 51 3 chr3 132105268 132105564 -85931594 + AluSq SINE Alu 1 310 -3 2336 59 0 16 chr3 132105771 132106078 -85931080 + AluY SINE Alu 1 302 -9 1842 166 47 0 chr3 132106214 132106510 -85930648 + AluJb SINE Alu 3 312 0 202 139 0 47 chr3 132106954 132106997 -85930161 + (TTCC)n Simple_repeat Simple_repeat 3 43 0 1021 191 0 0 chr3 132107086 132107259 -85929899 + AluJo SINE Alu 3 175 -137 600 141 175 51 chr3 132107259 132107436 -85929722 - Charlie5 DNA MER1_type -42 2570 2372 926 64 0 0 chr3 132107641 132107751 -85929407 + AluSg SINE Alu 2 111 -199 247 226 0 32 chr3 132107756 132107818 -85929340 + (TATG)n Simple_repeat Simple_repeat 3 62 0 22 0 0 0 chr3 132107943 132107965 -85929193 + AT_rich Low_complexity Low_complexity 1 22 0 518 325 122 28 chr3 132108844 132109719 -85927439 - L2 LINE L2 -182 3090 2134 357 289 25 25 chr3 132109735 132109856 -85927302 + L2 LINE L2 3193 3313 0 1984 147 16 10 chr3 132110763 132111070 -85926088 + AluSg SINE Alu 2 310 0 267 295 64 0 chr3 132112747 132112825 -85924333 - L2 LINE L2 -86 3186 3104 325 267 114 8 chr3 132113672 132113803 -85923355 - MIR SINE MIR -70 192 48 667 187 8 16 chr3 132115013 132115136 -85922022 + FLAM_A SINE Alu 1 122 -11 1421 163 9 4 chr3 132115163 132115390 -85921768 + AluJo SINE Alu 1 228 -84 25 0 0 0 chr3 132115430 132115455 -85921703 + AT_rich Low_complexity Low_complexity 1 25 0 759 263 84 0 chr3 132115464 132115654 -85921504 + MIR SINE MIR 38 243 -19 21 57 0 0 chr3 132115732 132115767 -85921391 + AT_rich Low_complexity Low_complexity 1 35 0 192 340 87 0 chr3 132116233 132116336 -85920822 + L2 LINE L2 3142 3253 -19 1937 141 20 13 chr3 132117960 132118265 -85918893 + AluJo SINE Alu 1 307 -5 615 121 0 0 chr3 132118581 132118695 -85918463 + AluSg/x SINE Alu 199 312 0 216 0 0 0 chr3 132119626 132119650 -85917508 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 2236 102 3 0 chr3 132119801 132120117 -85917041 + AluSp SINE Alu 1 313 0 1844 176 0 14 chr3 132120385 132120681 -85916477 - AluJo SINE Alu -20 292 1 809 177 16 83 chr3 132120724 132120868 -85916290 + MIR SINE MIR 57 186 -76 2250 105 0 3 chr3 132120868 132121162 -85915996 + AluSq SINE Alu 5 297 -16 809 177 16 83 chr3 132121162 132121209 -85915949 + MIR SINE MIR 186 235 -27 417 290 160 0 chr3 132122005 132122136 -85915022 + MER63A DNA MER1_type 59 210 0 442 148 0 25 chr3 132122301 132122382 -85914776 - AluJ/FRAM SINE Alu -6 306 228 1362 275 25 10 chr3 132122521 132122917 -85914241 - L1MC4a LINE L1 -1878 5930 5529 191 350 0 64 chr3 132122917 132123057 -85914101 + L2 LINE L2 2617 2747 -567 876 196 137 5 chr3 132123102 132123321 -85913837 + MER33 DNA MER1_type 6 253 -71 415 191 45 9 chr3 132123331 132123441 -85913717 + MER33 DNA MER1_type 209 322 -2 284 187 288 58 chr3 132124871 132125010 -85912148 - L1ME4a LINE L1 -10 6111 5941 2312 94 3 7 chr3 132125083 132125391 -85911767 + AluSx SINE Alu 1 307 -5 201 229 0 0 chr3 132125391 132125439 -85911719 + GA-rich Low_complexity Low_complexity 1 48 0 450 261 62 117 chr3 132125986 132126238 -85910920 - L2 LINE L2 -2 3311 3079 1852 159 14 0 chr3 132126238 132126515 -85910643 - AluJo SINE Alu -31 281 1 450 261 62 117 chr3 132126515 132126587 -85910571 - L2 LINE L2 -234 3079 3005 830 257 139 36 chr3 132126594 132127312 -85909846 - L2 LINE L2 -4 3309 2520 479 211 12 87 chr3 132127683 132127844 -85909314 + MER5B DNA MER1_type 30 178 0 2268 92 4 0 chr3 132127880 132128204 -85908954 + AluSp SINE Alu 1 325 0 425 245 13 33 chr3 132131160 132131311 -85905847 + (CAGAGA)n Simple_repeat Simple_repeat 3 150 0 1977 142 0 7 chr3 132131664 132131959 -85905199 - AluSx SINE Alu -6 306 14 252 0 0 0 chr3 132132202 132132230 -85904928 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1706 154 56 11 chr3 132132334 132132620 -85904538 + AluJb SINE Alu 1 299 -13 2437 88 3 0 chr3 132132873 132133180 -85903978 + AluSx SINE Alu 1 308 -4 201 281 45 11 chr3 132133729 132133818 -85903340 + MIR SINE MIR 118 209 -53 610 293 74 8 chr3 132133839 132134081 -85903077 - MIR SINE MIR -1 261 4 696 244 0 17 chr3 132134593 132134769 -85902389 + MER5B DNA MER1_type 1 173 -5 1810 158 3 26 chr3 132135508 132135811 -85901347 + AluJo SINE Alu 1 296 -16 414 291 204 52 chr3 132136032 132136321 -85900837 + LTR16C LTR ERVL 37 369 -122 2142 130 0 40 chr3 132136324 132136510 -85900648 - AluSx SINE Alu -1 311 142 2000 121 7 29 chr3 132136510 132136816 -85900342 - AluSg SINE Alu -11 299 1 2142 130 0 40 chr3 132136816 132136953 -85900205 - AluSx SINE Alu -170 142 1 296 210 16 0 chr3 132136974 132137036 -85900122 + LTR16C LTR ERVL 429 491 0 372 358 11 6 chr3 132137085 132137264 -85899894 - MIR3 SINE MIR -10 198 19 759 262 49 0 chr3 132137308 132137491 -85899667 - MER117 DNA MER1_type -5 192 1 1206 265 20 59 chr3 132138811 132139252 -85897906 - LTR16A1 LTR ERVL -4 453 30 634 312 66 93 chr3 132139303 132139454 -85897704 + L3 LINE CR1 836 990 -587 4860 103 47 56 chr3 132139454 132140074 -85897084 + L1MC2 LINE L1 5490 6103 -241 1942 104 97 0 chr3 132140074 132140352 -85896806 + AluSx SINE Alu 1 305 -7 4860 103 47 56 chr3 132140352 132140576 -85896582 + L1MC2 LINE L1 6103 6327 -17 634 312 66 93 chr3 132140576 132141087 -85896071 + L3 LINE CR1 990 1480 -97 224 330 80 0 chr3 132141397 132141497 -85895661 - MIR SINE MIR -1 261 154 1630 205 13 3 chr3 132141514 132141821 -85895337 + AluJo SINE Alu 1 310 -2 233 163 20 0 chr3 132141821 132141870 -85895288 + GA-rich Low_complexity Low_complexity 1 50 0 224 228 18 18 chr3 132141881 132141938 -85895220 + GA-rich Low_complexity Low_complexity 1 57 0 981 175 0 29 chr3 132142000 132142171 -85894987 - AluJb SINE Alu -14 298 133 2110 123 3 16 chr3 132142193 132142510 -85894648 + AluSq SINE Alu 1 313 0 1810 196 79 79 chr3 132142637 132143158 -85894000 + MLT1F LTR MaLR 18 538 -4 235 167 0 0 chr3 132143341 132143377 -85893781 - MER2 DNA MER2_type -30 315 280 1342 139 10 5 chr3 132143416 132143625 -85893533 - MER2 DNA MER2_type -134 211 2 490 211 168 21 chr3 132144419 132144609 -85892549 + MIR SINE MIR 6 223 -39 1848 176 0 0 chr3 132145175 132145471 -85891687 - AluJb SINE Alu -12 300 5 201 264 149 0 chr3 132145956 132146043 -85891115 - L2 LINE L2 -3 3269 3170 2086 126 6 25 chr3 132147238 132147555 -85889603 + AluSq SINE Alu 1 311 -2 301 218 115 0 chr3 132147644 132147731 -85889427 - MIR SINE MIR 0 262 166 544 241 0 0 chr3 132147732 132147840 -85889318 - MER81 DNA DNA 0 114 7 1196 249 48 4 chr3 132147868 132148137 -85889021 + MER69 DNA AcHobo 1 281 -2245 330 181 307 0 chr3 132148140 132148267 -85888891 + MER69 DNA AcHobo 2358 2523 -3 204 231 296 28 chr3 132148276 132148384 -85888774 - MIR SINE MIR -114 148 12 218 222 0 0 chr3 132148473 132148518 -85888640 - MIR SINE MIR -107 155 111 1717 172 77 58 chr3 132148519 132148620 -85888538 + MLT1B LTR MaLR 1 99 -291 2029 143 3 0 chr3 132148620 132148927 -85888231 - AluSx SINE Alu -2 310 3 1717 172 77 58 chr3 132148927 132149202 -85887956 + MLT1B LTR MaLR 99 384 -6 388 292 0 0 chr3 132149205 132149301 -85887857 - MIR SINE MIR -148 114 19 1967 194 46 35 chr3 132149310 132149573 -85887585 - MER90 LTR ERV1 0 575 289 2633 60 0 0 chr3 132149573 132149874 -85887284 - AluY SINE Alu -10 301 1 1967 194 46 35 chr3 132149874 132150098 -85887060 - MER90 LTR ERV1 -286 289 69 1026 280 101 76 chr3 132151258 132151812 -85885346 - MLT1K LTR MaLR -7 581 14 21 0 0 0 chr3 132151879 132151900 -85885258 + AT_rich Low_complexity Low_complexity 1 21 0 1643 142 116 7 chr3 132152532 132152807 -85884351 - AluSg SINE Alu -5 305 1 3644 140 0 6 chr3 132152895 132153425 -85883733 - MER1A DNA MER1_type 0 527 1 1751 173 22 0 chr3 132153779 132154083 -85883075 + AluJb SINE Alu 1 310 0 217 261 24 123 chr3 132154162 132154395 -85882763 - MIR3 SINE MIR -24 184 11 514 268 102 21 chr3 132155793 132156028 -85881130 - MLT1K LTR MaLR 0 588 335 350 302 40 67 chr3 132156533 132156682 -85880476 + L2 LINE L2 3126 3270 -2 1484 139 35 115 chr3 132156785 132157159 -85879999 - MER2 DNA MER2_type 0 344 1 2109 211 86 6 chr3 132157462 132157949 -85879209 - MLT1F LTR MaLR -7 535 10 565 318 65 0 chr3 132158055 132158272 -85878886 - L3 LINE CR1 -89 1488 1258 272 299 52 45 chr3 132158409 132158598 -85878560 - L1ME4a LINE L1 -43 6078 5885 7705 30 0 0 chr3 132158598 132159619 -85877539 - L1PA4 LINE L1 0 6155 5139 272 299 52 45 chr3 132159619 132159697 -85877461 - L1ME4a LINE L1 -236 5885 5809 252 248 110 41 chr3 132159727 132159872 -85877286 - L1ME4a LINE L1 -175 5946 5792 1303 164 5 0 chr3 132160132 132160339 -85876819 + AluJo SINE Alu 85 292 -20 2322 62 38 7 chr3 132160491 132160781 -85876377 + AluY SINE Alu 1 299 -12 214 264 14 14 chr3 132161187 132161259 -85875899 + CT-rich Low_complexity Low_complexity 3 74 0 2300 110 0 0 chr3 132162291 132162600 -85874558 - AluSx SINE Alu -3 309 1 2028 136 23 0 chr3 132162631 132162933 -85874225 - AluSx SINE Alu -3 309 1 1522 174 3 76 chr3 132162936 132163253 -85873905 - AluJb SINE Alu -18 294 1 265 281 109 32 chr3 132163258 132163415 -85873743 - MIR SINE MIR -51 211 44 848 130 0 0 chr3 132163518 132163633 -85873525 + AluSg SINE Alu 1 115 -195 333 151 19 22 chr3 132163633 132163725 -85873433 + AluSp/q SINE Alu 167 225 -78 1694 256 91 38 chr3 132163976 132165291 -85871867 + HAL1 LINE L1 67 1559 -948 1740 143 23 40 chr3 132165298 132165598 -85871560 + AluJb SINE Alu 1 295 -17 23 33 0 0 chr3 132165890 132165920 -85871238 + AT_rich Low_complexity Low_complexity 1 30 0 935 258 82 19 chr3 132165920 132166188 -85870970 + L1MC/D LINE L1 5423 5707 -2101 2258 123 0 0 chr3 132166260 132166561 -85870597 - AluSx SINE Alu -11 301 1 2472 99 59 31 chr3 132166620 132166974 -85870184 - THE1B LTR MaLR 0 364 1 491 276 109 8 chr3 132167032 132167407 -85869751 + L1ME LINE L1 5156 5574 -588 1850 130 71 60 chr3 132168008 132168376 -85868782 - THE1C LTR MaLR -1 374 3 297 75 0 0 chr3 132168579 132168619 -85868539 + (TCCC)n Simple_repeat Simple_repeat 4 43 0 37981 83 14 21 chr3 132168802 132171650 -85865508 + L1PA6 LINE L1 11 2879 -3275 2569 71 0 0 chr3 132171650 132171961 -85865197 + AluY SINE Alu 1 311 0 37981 83 14 21 chr3 132171961 132172559 -85864599 + L1PA6 LINE L1 2879 3480 -2674 2068 102 0 14 chr3 132172559 132172871 -85864287 + AluSc SINE Alu 1 308 0 37981 83 14 21 chr3 132172871 132175617 -85861541 + L1PA6 LINE L1 3480 6153 -1 358 103 0 5 chr3 132175662 132175728 -85861430 - MLT2D LTR ERVL 0 414 369 1913 158 0 13 chr3 132175731 132176035 -85861123 + AluJb SINE Alu 1 300 -12 2033 109 18 11 chr3 132176043 132176390 -85860768 + AluSx SINE Alu 8 312 0 202 268 0 0 chr3 132176456 132176497 -85860661 - L2 LINE L2 -200 3072 3032 26 0 0 0 chr3 132177220 132177246 -85859912 + AT_rich Low_complexity Low_complexity 1 26 0 364 315 93 46 chr3 132177715 132178197 -85858961 + L1ME LINE L1 5326 5663 -458 2267 121 0 3 chr3 132182429 132182742 -85854416 + AluSx SINE Alu 1 312 0 329 248 99 0 chr3 132182753 132182874 -85854284 + MER58B DNA MER1_type 100 232 -109 3793 144 49 20 chr3 132182875 132183563 -85853595 + MER67C LTR ERV1 3 710 0 578 209 0 0 chr3 132183563 132183668 -85853490 + MER58B DNA MER1_type 228 332 -9 272 317 73 0 chr3 132183840 132183922 -85853236 - MER102b DNA MER1_type -1 340 253 242 277 48 0 chr3 132183977 132184060 -85853098 - MER102b DNA MER1_type -194 147 61 246 250 0 0 chr3 132184518 132184570 -85852588 + MIR SINE MIR 210 261 -1 1522 179 8 8 chr3 132184716 132184978 -85852180 + AluJo SINE Alu 47 308 -4 239 0 32 0 chr3 132184987 132185018 -85852140 + (TTA)n Simple_repeat Simple_repeat 3 34 0 7499 51 4 0 chr3 132185018 132186220 -85850938 - L1PA6 LINE L1 -18 6136 4933 3954 185 27 1 chr3 132186220 132186962 -85850196 - L1P LINE L1 -5375 771 11 354 297 0 0 chr3 132186975 132187066 -85850092 + MLT1H1 LTR MaLR 18 108 -459 1071 154 67 26 chr3 132187067 132187262 -85849896 - AluJo SINE Alu -23 289 87 728 250 127 82 chr3 132187263 132187703 -85849455 + MLT1H1 LTR MaLR 96 555 0 394 68 119 3 chr3 132188262 132188628 -85848530 + (TA)n Simple_repeat Simple_repeat 1 408 0 1261 215 81 3 chr3 132188780 132189064 -85848094 + L1MC4 LINE L1 6459 6764 -1278 272 208 0 0 chr3 132189110 132189158 -85848000 - MER58A DNA MER1_type -36 71 24 456 19 0 0 chr3 132189163 132189216 -85847942 + (CA)n Simple_repeat Simple_repeat 2 54 0 2698 89 16 3 chr3 132189221 132189590 -85847568 - L1PA14 LINE L1 -333 5828 5455 375 159 17 0 chr3 132189644 132189753 -85847405 + L1MC4 LINE L1 7704 8042 0 242 250 139 0 chr3 132190326 132190434 -85846724 + L1M4 LINE L1 2170 2292 -3854 634 308 77 25 chr3 132190442 132190981 -85846177 - MLT1L LTR MaLR 0 615 15 932 141 0 0 chr3 132191150 132191285 -85845873 + FLAM_C SINE Alu 1 135 -8 322 295 139 0 chr3 132191536 132191665 -85845493 - LTR16A1 LTR ERVL -308 149 3 479 202 91 0 chr3 132191669 132191768 -85845390 + MIR SINE MIR 3 110 -152 351 171 53 0 chr3 132191859 132191935 -85845223 + MIR SINE MIR 121 200 -62 438 222 13 0 chr3 132192039 132192124 -85845034 + L1MC4a LINE L1 5481 5569 -605 799 269 167 64 chr3 132192124 132192193 -85844965 + MLT1H1 LTR MaLR 1 62 -493 2576 105 118 18 chr3 132192193 132192582 -85844576 - MSTA LTR MaLR 0 428 1 799 269 167 64 chr3 132192582 132193010 -85844148 + MLT1H1 LTR MaLR 62 555 0 1779 223 92 108 chr3 132193010 132193836 -85843322 + L1MC4a LINE L1 5562 6370 -1438 2175 185 3 11 chr3 132193836 132194204 -85842954 - MLT1A1 LTR MaLR 0 365 1 1779 223 92 108 chr3 132194204 132194406 -85842752 + L1MC4a LINE L1 6370 6574 -1234 2231 212 48 30 chr3 132194931 132195391 -85841767 - MER63C DNA MER1_type -381 679 345 270 0 0 0 chr3 132195391 132195421 -85841737 + (TA)n Simple_repeat Simple_repeat 2 31 0 2231 212 48 30 chr3 132195421 132195773 -85841385 - MER63C DNA MER1_type -715 345 1 608 267 119 45 chr3 132197562 132197914 -85839244 + L2 LINE L2 2379 2756 -558 225 0 0 0 chr3 132199027 132199052 -85838106 + (CGGGGG)n Simple_repeat Simple_repeat 3 27 0 274 236 87 55 chr3 132200180 132200324 -85836834 - MER5A DNA MER1_type -22 167 7 2098 109 0 16 chr3 132200600 132200912 -85836246 + AluSc SINE Alu 1 307 -2 212 267 46 15 chr3 132202088 132202219 -85834939 + L2 LINE L2 1939 2073 -1241 339 232 109 65 chr3 132202274 132202412 -85834746 - MIR3 SINE MIR -62 146 3 214 254 0 17 chr3 132203279 132203338 -85833820 + (TAGGG)n Simple_repeat Simple_repeat 5 62 0 2156 129 0 0 chr3 132203339 132203634 -85833524 - AluSg SINE Alu -15 295 1 309 285 7 83 chr3 132203825 132203969 -85833189 + MIR SINE MIR 124 256 -6 1994 142 0 3 chr3 132203976 132204278 -85832880 - AluJb SINE Alu -11 301 1 1865 142 7 26 chr3 132204287 132204590 -85832568 - AluJo SINE Alu -15 297 1 196 327 173 19 chr3 132206893 132207055 -85830103 + L2 LINE L2 2221 2407 -907 1527 181 55 10 chr3 132207140 132207432 -85829726 - AluJb SINE Alu -7 305 1 285 252 205 53 chr3 132207995 132208146 -85829012 - MIR3 SINE MIR -5 203 30 815 239 154 72 chr3 132208272 132208333 -85828825 - MLT1J2 LTR MaLR -9 441 386 1970 127 36 0 chr3 132208333 132208636 -85828522 - AluSx SINE Alu 0 313 1 815 239 154 72 chr3 132208636 132208963 -85828195 - MLT1J2 LTR MaLR -64 386 20 227 261 204 11 chr3 132209463 132209551 -85827607 - L2 LINE L2 -8 3264 3160 25 65 0 0 chr3 132209647 132209693 -85827465 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr3 132209912 132209941 -85827217 + AT_rich Low_complexity Low_complexity 1 29 0 627 256 161 5 chr3 132210772 132210983 -85826175 - MIR SINE MIR 0 262 19 762 219 93 39 chr3 132211192 132211381 -85825777 + MIR SINE MIR 13 215 -47 2026 149 0 13 chr3 132211381 132211696 -85825462 + AluJb SINE Alu 1 311 -1 762 219 93 39 chr3 132211696 132211711 -85825447 + MIR SINE MIR 215 228 -34 428 288 62 34 chr3 132211812 132211958 -85825200 - L2 LINE L2 -1 3271 3122 512 325 141 4 chr3 132212086 132212363 -85824795 + L2 LINE L2 2946 3260 -12 1841 118 74 19 chr3 132212373 132212644 -85824514 - AluSx SINE Alu -26 286 1 267 315 141 50 chr3 132212658 132213056 -85824102 - L2 LINE L2 -240 3032 2598 1882 146 6 22 chr3 132214760 132215076 -85822082 - AluJb SINE Alu -1 311 1 694 238 7 14 chr3 132215145 132215288 -85821870 - MIR SINE MIR -87 175 34 718 251 73 9 chr3 132215701 132215920 -85821238 + MIR SINE MIR 29 261 -1 741 284 65 4 chr3 132216361 132216593 -85820565 + MIR SINE MIR 16 261 -1 2243 110 0 10 chr3 132220034 132220342 -85816816 - AluSx SINE Alu -7 305 1 532 218 158 0 chr3 132220397 132220530 -85816628 - MIR SINE MIR -101 161 8 22 0 0 0 chr3 132220562 132220584 -85816574 + AT_rich Low_complexity Low_complexity 1 22 0 1125 138 0 22 chr3 132220665 132220846 -85816312 + FRAM SINE Alu 1 176 0 1325 205 33 48 chr3 132222770 132223165 -85813993 - L1MC5 LINE L1 -45 7916 7528 593 311 112 19 chr3 132224187 132224499 -85812659 + MER102b DNA MER1_type 1 341 0 248 211 0 0 chr3 132224836 132224888 -85812270 - L1ME4a LINE L1 -8 6113 6062 809 114 22 1 chr3 132224959 132225242 -85811916 + AluSx SINE Alu 1 319 0 24 0 0 0 chr3 132225250 132225274 -85811884 + AT_rich Low_complexity Low_complexity 1 24 0 1559 144 0 89 chr3 132225313 132225604 -85811554 + AluJo SINE Alu 1 265 -47 545 255 57 33 chr3 132225631 132225843 -85811315 - L1ME4a LINE L1 -276 5845 5629 888 226 37 79 chr3 132226436 132226866 -85810292 - L1ME LINE L1 -4873 1667 1256 10426 173 28 11 chr3 132226884 132227706 -85809452 - L1PB2 LINE L1 -5 6540 5734 219 88 0 0 chr3 132227706 132227740 -85809418 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 10426 173 28 11 chr3 132227740 132228612 -85808546 - L1PB2 LINE L1 -811 5734 4879 459 0 0 0 chr3 132228612 132228663 -85808495 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 10426 173 28 11 chr3 132228663 132230063 -85807095 - L1PB2 LINE L1 -1666 4879 3505 1951 134 13 20 chr3 132230063 132230369 -85806789 - AluSx SINE Alu -8 304 1 10426 173 28 11 chr3 132230369 132230381 -85806777 - L1PB2 LINE L1 -3040 3505 3495 2054 137 3 3 chr3 132230381 132230674 -85806484 - AluJb SINE Alu -19 293 1 10426 173 28 11 chr3 132230674 132230792 -85806366 - L1PB2 LINE L1 -3050 3495 1025 257 240 52 21 chr3 132230928 132231024 -85806134 - L1MDa LINE L1 -6408 132 34 262 200 105 63 chr3 132231716 132231738 -85805420 - MIR SINE MIR -89 173 153 2095 127 0 0 chr3 132231738 132232065 -85805093 - AluSx SINE Alu 0 327 1 262 200 105 63 chr3 132232065 132232136 -85805022 - MIR SINE MIR -109 153 75 1773 209 42 21 chr3 132232293 132232675 -85804483 + MLT1B LTR MaLR 1 390 0 364 148 12 25 chr3 132233032 132233113 -85804045 + T-rich Low_complexity Low_complexity 5 84 0 736 161 46 8 chr3 132233124 132233254 -85803904 - AluSx SINE Alu -11 301 167 888 103 0 0 chr3 132233254 132233371 -85803787 - AluSx SINE Alu -195 117 1 1571 145 44 24 chr3 132233691 132233988 -85803170 + AluSx SINE Alu 1 303 -9 1797 114 95 22 chr3 132234007 132234280 -85802878 + AluSx SINE Alu 1 293 -19 2248 114 3 16 chr3 132234641 132234956 -85802202 - AluSx SINE Alu -1 311 1 2054 137 3 3 chr3 132234968 132235261 -85801897 - AluJb SINE Alu -19 293 1 294 237 18 35 chr3 132235264 132235378 -85801780 - L1ME LINE L1 -5404 1136 1025 282 268 37 33 chr3 132235436 132235608 -85801550 - L1ME LINE L1 -5878 652 482 220 242 16 16 chr3 132237069 132237131 -85800027 + GA-rich Low_complexity Low_complexity 5 66 0 277 145 145 0 chr3 132237511 132237573 -85799585 - L1PA6 LINE L1 0 6154 6084 630 26 0 0 chr3 132238003 132238079 -85799079 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 446 315 34 7 chr3 132238798 132238944 -85798214 - L2 LINE L2 -16 3256 3107 210 256 24 73 chr3 132239318 132239400 -85797758 + L2 LINE L2 3195 3272 0 244 325 141 18 chr3 132242369 132242532 -85794626 - MER5A DNA MER1_type 0 189 7 724 183 17 0 chr3 132243243 132243363 -85793795 + FLAM_A SINE Alu 8 129 -13 2170 110 0 0 chr3 132243716 132244006 -85793152 + AluSg SINE Alu 1 290 -20 332 358 73 0 chr3 132244742 132244879 -85792279 + MER117 DNA MER1_type 3 149 -48 1910 256 111 91 chr3 132245124 132245345 -85791813 - L1MC4 LINE L1 -55 7987 7772 2234 102 0 13 chr3 132245345 132245649 -85791509 - AluSx SINE Alu -12 300 1 1910 256 111 91 chr3 132245649 132246702 -85790456 - L1MC4 LINE L1 -270 7772 6688 1489 195 13 33 chr3 132246707 132247014 -85790144 - AluJo SINE Alu -11 301 1 5197 87 50 32 chr3 132247055 132247841 -85789317 - SVA Other Other 0 1386 587 1651 271 114 26 chr3 132247987 132248835 -85788323 - L1MEc LINE L1 -3943 2453 1531 25 0 0 0 chr3 132249096 132249121 -85788037 + AT_rich Low_complexity Low_complexity 1 25 0 199 394 48 0 chr3 132251429 132251533 -85785625 + L2 LINE L2 3163 3271 -1 314 350 29 0 chr3 132251547 132251684 -85785474 - L3 LINE CR1 -46 1531 1391 265 280 0 97 chr3 132251797 132251844 -85785314 - L3 LINE CR1 -181 1396 1361 2093 82 71 0 chr3 132251844 132252124 -85785034 - AluSp SINE Alu -13 300 1 265 280 0 97 chr3 132252124 132252169 -85784989 - L3 LINE CR1 -216 1361 1313 317 291 110 35 chr3 132252412 132252639 -85784519 - MIR SINE MIR -6 256 13 288 333 73 40 chr3 132253522 132253672 -85783486 + MER5B DNA MER1_type 1 155 -23 374 339 8 8 chr3 132253540 132253670 -85783488 - MER5A DNA MER1_type -23 166 37 870 185 190 22 chr3 132253682 132253914 -85783244 + ORSL DNA AcHobo 1 271 -4 292 194 280 32 chr3 132253964 132254057 -85783101 - FLAM_A SINE Alu 0 133 18 2023 101 4 0 chr3 132254085 132254352 -85782806 - AluSx SINE Alu -44 268 1 478 198 78 132 chr3 132254655 132254851 -85782307 + MER112 DNA MER1_type 7 187 -73 1931 111 17 21 chr3 132254851 132255139 -85782019 + AluSg SINE Alu 23 309 -1 478 198 78 132 chr3 132255139 132255199 -85781959 + MER112 DNA MER1_type 187 249 -11 45386 36 3 3 chr3 132255281 132261429 -85775729 + L1PA4 LINE L1 1 6180 0 238 65 0 0 chr3 132261429 132261460 -85775698 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 522 256 83 17 chr3 132261554 132261734 -85775424 - L2 LINE L2 0 3313 3122 812 204 55 6 chr3 132262272 132262453 -85774705 - MER58A DNA MER1_type 0 224 35 35 0 0 0 chr3 132262702 132262737 -85774421 + AT_rich Low_complexity Low_complexity 1 35 0 628 271 147 25 chr3 132264122 132264557 -85772601 + L1ME LINE L1 5292 5779 -391 31 44 0 0 chr3 132264557 132264602 -85772556 + AT_rich Low_complexity Low_complexity 1 45 0 901 189 92 12 chr3 132264642 132264939 -85772219 + L1M4 LINE L1 5363 5886 -276 1875 168 15 0 chr3 132264939 132265278 -85771880 + MLT2C1 LTR ERVL 1 344 -53 251 280 0 11 chr3 132265292 132265385 -85771773 + (TA)n Simple_repeat Simple_repeat 1 92 0 1286 145 8 47 chr3 132265514 132265697 -85771461 - L1MB7 LINE L1 -326 5858 5686 2258 95 14 0 chr3 132265697 132265993 -85771165 + AluSp SINE Alu 1 300 -13 1286 145 8 47 chr3 132265993 132266064 -85771094 - L1MB7 LINE L1 -498 5686 5614 266 113 0 94 chr3 132266064 132266117 -85771041 - MLT2C1 LTR ERVL 0 397 357 925 217 0 0 chr3 132266276 132266442 -85770716 + FRAM SINE Alu 1 166 0 1149 273 140 59 chr3 132267213 132267820 -85769338 + L1M4 LINE L1 3736 4441 -1705 3651 157 78 27 chr3 132267820 132268516 -85768642 + MER44D DNA MER2_type 3 605 0 1149 273 140 59 chr3 132268516 132268806 -85768352 + L1M4 LINE L1 4441 4706 -1440 2758 61 0 21 chr3 132269026 132269405 -85767753 + SVA Other Other 1 371 -1015 3108 144 14 12 chr3 132270416 132270986 -85766172 - L1MB7 LINE L1 -170 6014 5444 223 362 55 25 chr3 132270997 132271196 -85765962 + L2 LINE L2 1750 1954 -1360 184 281 7 89 chr3 132273343 132273478 -85763680 - L3 LINE CR1 -313 1264 1141 * 486 289 134 15 chr3 132273476 132273677 -85763481 + MIR SINE MIR 25 249 -13 897 275 78 31 chr3 132273717 132274077 -85763081 - L3 LINE CR1 -465 1112 736 1076 236 90 92 chr3 132274087 132274347 -85762811 - L1MC4a LINE L1 -933 6875 6616 437 0 0 19 chr3 132274347 132274401 -85762757 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 1076 236 90 92 chr3 132274401 132274446 -85762712 - L1MC4a LINE L1 -1192 6616 6572 433 202 30 20 chr3 132274446 132274545 -85762613 - U13 snRNA snRNA -4 100 1 1076 236 90 92 chr3 132274545 132274644 -85762514 - L1MC4a LINE L1 -1236 6572 6474 2379 102 0 0 chr3 132274644 132274947 -85762211 + AluSc SINE Alu 1 303 -6 1076 236 90 92 chr3 132274947 132275007 -85762151 - L1MC4a LINE L1 -1334 6474 6415 2243 98 0 10 chr3 132275007 132275302 -85761856 + AluSc SINE Alu 1 292 -17 1076 236 90 92 chr3 132275302 132275735 -85761423 - L1MC4a LINE L1 -1393 6415 5977 344 293 0 7 chr3 132275736 132275876 -85761282 + (TA)n Simple_repeat Simple_repeat 2 140 0 1521 240 45 13 chr3 132275881 132276344 -85760814 - L1MC4a LINE L1 -1856 5952 5475 305 266 24 83 chr3 132276348 132276517 -85760641 - L1MC4a LINE L1 -1037 5109 4951 9549 27 0 222 chr3 132276518 132278282 -85758876 - SVA Other Other 0 1386 14 1911 157 26 20 chr3 132278284 132278635 -85758523 - L1PA16 LINE L1 -132 6034 5682 355 319 222 26 chr3 132279775 132280117 -85757041 - L3 LINE CR1 -28 1549 1141 1823 147 6 45 chr3 132280627 132280941 -85756217 + AluJo SINE Alu 1 302 -10 387 295 92 29 chr3 132281115 132281288 -85755870 - MIR3 SINE MIR -16 192 9 293 306 58 93 chr3 132281604 132281914 -85755244 + L2 LINE L2 2965 3263 -9 246 367 0 10 chr3 132282124 132282222 -85754936 + L2 LINE L2 3197 3293 -20 1108 161 143 64 chr3 132282856 132283136 -85754022 + AluJo SINE Alu 1 302 0 211 308 128 17 chr3 132283259 132283376 -85753782 - MIR SINE MIR -62 146 17 306 0 0 0 chr3 132283408 132283442 -85753716 + (CA)n Simple_repeat Simple_repeat 1 34 0 639 224 0 28 chr3 132283789 132283932 -85753226 - L2 LINE L2 -6 3307 3169 292 324 44 80 chr3 132285086 132285311 -85751847 - L2 LINE L2 -17 3255 3039 1705 157 0 75 chr3 132285710 132286041 -85751117 + AluJb SINE Alu 1 306 -6 204 235 173 25 chr3 132286245 132286326 -85750832 - L3 LINE CR1 -7 1570 1478 473 325 192 19 chr3 132286370 132286797 -85750361 - L3 LINE CR1 -221 1356 856 2037 214 46 2 chr3 132286813 132287373 -85749785 - L1M4 LINE L1 -3217 2929 2345 436 169 40 33 chr3 132287401 132287520 -85749638 + L1ME2 LINE L1 5894 5997 -167 668 200 7 7 chr3 132287530 132287680 -85749478 + L1MA10 LINE L1 6176 6325 -9 1043 181 65 0 chr3 132287694 132287893 -85749265 - Charlie1a DNA MER1_type -1230 225 14 22 35 0 0 chr3 132289481 132289510 -85747648 + AT_rich Low_complexity Low_complexity 1 29 0 2276 115 0 6 chr3 132289521 132289835 -85747323 + AluSx SINE Alu 1 312 0 2315 142 98 56 chr3 132289845 132290491 -85746667 + Charlie1a DNA MER1_type 673 1345 -110 526 234 224 10 chr3 132290959 132291164 -85745994 + MIR SINE MIR 12 260 -2 1845 136 0 57 chr3 132291483 132291814 -85745344 + AluSx SINE Alu 1 312 0 367 195 18 92 chr3 132291826 132291935 -85745223 + AluSp SINE Alu 120 197 -106 21 57 0 0 chr3 132293158 132293193 -85743965 + AT_rich Low_complexity Low_complexity 1 35 0 776 192 0 0 chr3 132293238 132293363 -85743795 + FLAM_A SINE Alu 1 125 -8 27 0 0 0 chr3 132293363 132293390 -85743768 + AT_rich Low_complexity Low_complexity 1 27 0 217 175 75 0 chr3 132293855 132293895 -85743263 + L2 LINE L2 3216 3258 -14 1991 148 10 3 chr3 132293901 132294206 -85742952 - AluSx SINE Alu -5 307 1 255 98 122 0 chr3 132294576 132294617 -85742541 + MIR SINE MIR 201 246 -16 2113 136 0 13 chr3 132294644 132294960 -85742198 + AluJb SINE Alu 1 312 0 729 309 134 49 chr3 132296019 132296964 -85740194 + L1ME4a LINE L1 4084 5109 -1037 1602 179 44 17 chr3 132297077 132297373 -85739785 - AluJo SINE Alu -3 309 6 251 304 58 39 chr3 132297449 132297531 -85739627 + L1ME4a LINE L1 5339 5418 -703 2033 118 6 29 chr3 132297531 132297844 -85739314 - AluSx SINE Alu -6 306 1 251 304 58 39 chr3 132297844 132297887 -85739271 + L1ME4a LINE L1 5418 5459 -662 1748 171 4 7 chr3 132297887 132298167 -85738991 - AluJb SINE Alu -33 279 1 251 304 58 39 chr3 132298167 132298297 -85738861 + L1ME4a LINE L1 5459 5600 -521 523 291 119 67 chr3 132298349 132299017 -85738141 - L2 LINE L2 -86 3227 2517 675 189 78 10 chr3 132299109 132299315 -85737843 + L1ME4a LINE L1 5604 5823 -298 239 244 67 0 chr3 132299368 132299458 -85737700 + L1ME4a LINE L1 5930 6025 -96 1174 121 32 0 chr3 132299460 132299699 -85737459 + L1MB7 LINE L1 5227 5475 -699 1152 46 0 0 chr3 132299711 132299842 -85737316 - AluSg SINE Alu -179 131 1 3077 173 49 18 chr3 132299868 132300522 -85736636 + L1MB7 LINE L1 5495 6168 -16 367 248 62 39 chr3 132300632 132300761 -85736397 + MIR SINE MIR 128 259 -3 682 171 14 5 chr3 132302308 132302444 -85734714 - L1PA16 LINE L1 -4 6159 6022 2433 72 0 28 chr3 132302738 132303058 -85734100 - AluY SINE Alu 0 311 1 2236 82 0 35 chr3 132303254 132303571 -85733587 - AluSg1 SINE Alu -3 306 1 293 0 27 0 chr3 132303723 132303760 -85733398 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 6392 63 14 57 chr3 132303760 132305821 -85731337 - SVA Other Other -518 1363 14 2000 142 23 20 chr3 132305823 132306175 -85730983 - L1PA16 LINE L1 -132 6034 5682 1521 180 58 22 chr3 132307699 132308060 -85729098 - MER34 LTR ERV1 -13 529 156 2440 80 3 0 chr3 132308062 132308361 -85728797 - AluY SINE Alu -11 300 1 417 132 15 0 chr3 132308361 132308437 -85728721 - MER34 LTR ERV1 -464 97 10 456 309 95 34 chr3 132308485 132308780 -85728378 + L1ME4a LINE L1 5539 5851 -270 209 191 0 88 chr3 132309226 132309294 -85727864 - MIR SINE MIR -131 77 16 262 197 159 98 chr3 132309479 132309502 -85727656 + MLT1J LTR MaLR 3 23 -488 2732 137 59 7 chr3 132309502 132309962 -85727196 + MER31A LTR ERV1 1 484 -1 262 197 159 98 chr3 132309962 132310070 -85727088 + MLT1J LTR MaLR 23 142 -369 252 0 0 0 chr3 132310073 132310101 -85727057 + (TAGA)n Simple_repeat Simple_repeat 4 31 0 213 39 0 0 chr3 132310124 132310150 -85727008 + (TG)n Simple_repeat Simple_repeat 1 26 0 242 259 52 0 chr3 132310908 132310966 -85726192 + L2 LINE L2 3251 3311 -2 23 54 0 0 chr3 132311731 132311768 -85725390 + AT_rich Low_complexity Low_complexity 1 37 0 2662 176 30 2 chr3 132312689 132313196 -85723962 + L1MB2 LINE L1 5651 6171 0 218 313 12 25 chr3 132313801 132313881 -85723277 + L2 LINE L2 3235 3313 0 1882 172 3 0 chr3 132314093 132314389 -85722769 - AluSx SINE Alu -13 299 3 790 161 15 0 chr3 132314928 132315065 -85722093 + AluJ SINE Alu 1 139 -173 440 202 248 0 chr3 132315282 132315391 -85721767 - MIR SINE MIR -34 228 93 259 309 221 20 chr3 132315383 132315632 -85721526 + L2 LINE L2 2639 2937 -377 * 614 304 108 50 chr3 132315648 132316268 -85720890 - L2 LINE L2 0 3313 2543 354 273 264 22 chr3 132316454 132316685 -85720473 - L2 LINE L2 -2107 1207 921 1802 91 12 8 chr3 132316876 132317129 -85720029 + AluSc SINE Alu 56 309 0 22 70 0 0 chr3 132319242 132319285 -85717873 + GC_rich Low_complexity Low_complexity 1 43 0 26 64 0 0 chr3 132319517 132319564 -85717594 + GC_rich Low_complexity Low_complexity 1 47 0 1681 176 21 6 chr3 132320640 132320970 -85716188 - MLT1A1 LTR MaLR 0 365 31 732 176 40 7 chr3 132320973 132321121 -85716037 + AluJ SINE Alu 137 289 -13 197 122 49 49 chr3 132321206 132321247 -85715911 + MIR SINE MIR 220 260 -2 951 308 157 14 chr3 132321321 132321876 -85715282 + L3 LINE CR1 891 1524 -53 1982 142 0 0 chr3 132321933 132322235 -85714923 + AluJb SINE Alu 2 303 0 483 211 0 18 chr3 132322305 132322419 -85714739 - L1MD3 LINE L1 -206 7789 7678 1559 133 33 8 chr3 132322875 132323116 -85714042 - AluJb SINE Alu -2 310 64 324 202 110 18 chr3 132323254 132323363 -85713795 - L2 LINE L2 -1224 2090 1972 5629 268 102 34 chr3 132323382 132325569 -85711589 - L2 LINE L2 -99 3214 830 1816 104 29 25 chr3 132325569 132325848 -85711310 + AluSq SINE Alu 21 300 -13 5629 268 102 34 chr3 132325848 132326174 -85710984 - L2 LINE L2 -2483 830 527 289 186 0 70 chr3 132326174 132326260 -85710898 + L1MEc LINE L1 45 124 -6272 738 157 0 0 chr3 132326286 132326407 -85710751 + FLAM_A SINE Alu 16 136 -6 1427 256 70 2 chr3 132326419 132326848 -85710310 + L1MEc LINE L1 109 566 -5830 976 225 12 101 chr3 132326864 132327455 -85709703 + L1MEc LINE L1 955 1539 -1037 875 286 98 19 chr3 132327456 132327823 -85709335 - L2 LINE L2 -2885 429 34 2476 146 14 30 chr3 132328240 132328671 -85708487 - MSTB LTR MaLR -2 424 1 876 158 8 0 chr3 132328890 132329023 -85708135 - AluJo SINE Alu -178 134 1 349 321 77 36 chr3 132329861 132330029 -85707129 + L3 LINE CR1 926 1100 -477 2120 133 7 0 chr3 132330614 132330914 -85706244 - AluSx SINE Alu -10 302 1 25 31 0 0 chr3 132331446 132331478 -85705680 + AT_rich Low_complexity Low_complexity 1 32 0 255 292 12 32 chr3 132331549 132331691 -85705467 - L2 LINE L2 -221 3051 2914 258 309 86 43 chr3 132332026 132332259 -85704899 - L2 LINE L2 -467 2847 2605 421 242 22 0 chr3 132332294 132332385 -85704773 - L2 LINE L2 0 3313 3221 977 260 154 58 chr3 132332478 132333249 -85703909 - L2 LINE L2 -105 3208 2372 815 138 8 0 chr3 132333679 132333802 -85703356 + FLAM_C SINE Alu 1 124 -9 518 96 0 0 chr3 132334820 132334893 -85702265 - L1PA10 LINE L1 -3 6165 6093 534 302 118 33 chr3 132335084 132335534 -85701624 + L1MC4a LINE L1 4903 5390 -756 599 298 111 29 chr3 132335577 132336063 -85701095 + L1MC4a LINE L1 5388 5913 -1895 1837 166 31 0 chr3 132336205 132336494 -85700664 - AluJo SINE Alu -14 298 1 404 313 30 8 chr3 132336738 132336869 -85700289 + MER5A DNA MER1_type 55 188 -1 2111 91 49 3 chr3 132337212 132337497 -85699661 + AluSx SINE Alu 1 298 -14 2077 122 11 0 chr3 132338237 132338523 -85698635 + AluSx SINE Alu 9 297 -15 371 282 162 59 chr3 132338844 132338908 -85698250 - MLT1J LTR MaLR -38 473 417 1405 90 29 86 chr3 132338908 132339152 -85698006 - MER30 DNA MER1_type 0 230 1 371 282 162 59 chr3 132339152 132339334 -85697824 - MLT1J LTR MaLR -94 417 255 2037 142 10 0 chr3 132339334 132339629 -85697529 - AluSx SINE Alu -14 298 1 371 282 162 59 chr3 132339629 132339806 -85697352 - MLT1J LTR MaLR -256 255 5 426 203 82 57 chr3 132340811 132340969 -85696189 - MLT1J LTR MaLR -13 498 337 1304 164 12 8 chr3 132341510 132341760 -85695398 + MLT1D LTR MaLR 250 500 -5 1575 168 52 52 chr3 132341824 132342134 -85695024 - AluJb SINE Alu 0 312 3 749 260 100 52 chr3 132342172 132342734 -85694424 + L1ME4a LINE L1 5512 6100 -21 2020 128 3 27 chr3 132342905 132343203 -85693955 + AluSx SINE Alu 3 293 -19 1924 140 34 0 chr3 132343213 132343506 -85693652 + AluJo SINE Alu 1 303 -9 317 262 65 47 chr3 132343690 132343797 -85693361 + L2 LINE L2 3160 3268 -4 189 240 20 160 chr3 132344448 132344548 -85692610 + MIR3 SINE MIR 5 90 -118 2391 94 28 17 chr3 132345140 132345500 -85691658 + THE1B LTR MaLR 1 364 0 448 351 34 30 chr3 132346733 132347029 -85690129 + L2 LINE L2 1846 2142 -1172 537 317 70 29 chr3 132347226 132347620 -85689538 + MER115 DNA AcHobo 1 434 -259 287 295 48 48 chr3 132347744 132347849 -85689309 + L2 LINE L2 3204 3308 -5 2197 141 0 0 chr3 132348808 132349274 -85687884 - AluSx SINE Alu 0 466 1 202 246 43 14 chr3 132350241 132350310 -85686848 - MIR3 SINE MIR -7 201 131 189 337 168 0 chr3 132350336 132350437 -85686721 - MIR SINE MIR -55 153 36 573 266 78 62 chr3 132350575 132350819 -85686339 + MIR SINE MIR 8 255 -7 291 290 0 0 chr3 132351938 132352000 -85685158 - L2 LINE L2 -7 3265 3204 425 270 42 121 chr3 132352045 132352358 -85684800 - L2 LINE L2 -188 3084 2797 497 324 128 54 chr3 132352382 132352790 -85684368 - L2 LINE L2 -8 3264 2827 5549 196 65 18 chr3 132353347 132353711 -85683447 + L1MB8 LINE L1 3667 4012 -2166 1651 157 11 8 chr3 132353711 132353972 -85683186 + AluSx SINE Alu 1 262 -50 189 0 0 0 chr3 132353972 132353993 -85683165 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 5549 196 65 18 chr3 132353993 132356019 -85681139 + L1MB8 LINE L1 4011 6172 -6 309 309 51 46 chr3 132356034 132356209 -85680949 + L1ME LINE L1 5320 5495 -675 377 317 144 8 chr3 132356357 132356521 -85680637 - MIR3 SINE MIR -6 202 20 21 0 0 0 chr3 132357043 132357064 -85680094 + AT_rich Low_complexity Low_complexity 1 21 0 1981 138 0 48 chr3 132357182 132357493 -85679665 + AluJb SINE Alu 1 296 -16 28 61 0 0 chr3 132357931 132357980 -85679178 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr3 132358118 132358139 -85679019 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 132358196 132358218 -85678940 + AT_rich Low_complexity Low_complexity 1 22 0 310 175 0 0 chr3 132358507 132358564 -85678594 - Charlie5 DNA MER1_type 0 2619 2563 6611 190 27 46 chr3 132358565 132360334 -85676824 + L1PB3 LINE L1 2750 4484 -1662 4234 29 2 0 chr3 132360340 132360866 -85676292 - L1PA4 LINE L1 -2100 4046 3520 * 10693 28 6 0 chr3 132360862 132362955 -85674203 + L1PA4 LINE L1 4051 6152 -3 5186 146 18 11 chr3 132362963 132364624 -85672534 + L1PB3 LINE L1 4477 6147 -7 25 94 0 23 chr3 132364624 132364752 -85672406 + AT_rich Low_complexity Low_complexity 1 125 0 775 163 68 80 chr3 132364757 132365008 -85672150 - Charlie5 DNA MER1_type -67 2545 2298 * 2399 168 52 10 chr3 132365002 132365578 -85671580 - Charlie5 DNA MER1_type -1426 1186 587 1256 176 70 36 chr3 132365574 132365903 -85671255 - Charlie5 DNA MER1_type -2228 384 45 * 201 74 0 0 chr3 132365977 132366004 -85671154 + (AATAG)n Simple_repeat Simple_repeat 4 30 0 347 222 79 16 chr3 132366014 132366140 -85671018 - MER112 DNA MER1_type -125 135 2 2822 13 0 0 chr3 132366443 132366751 -85670407 + AluY SINE Alu 1 308 -3 201 323 32 0 chr3 132366817 132366879 -85670279 - L2 LINE L2 -527 2787 2724 482 220 121 56 chr3 132367886 132368191 -85668967 - L1MC5 LINE L1 -414 7547 7223 265 296 81 12 chr3 132368239 132368411 -85668747 - L1P4 LINE L1 -372 5802 5619 1157 199 0 10 chr3 132368479 132368675 -85668483 - AluJo SINE Alu -118 194 1 24 32 0 0 chr3 132368762 132368793 -85668365 + AT_rich Low_complexity Low_complexity 1 31 0 2217 114 0 3 chr3 132368802 132369100 -85668058 + AluSq SINE Alu 1 297 -16 330 211 0 105 chr3 132369177 132369271 -85667887 + L1MC4 LINE L1 6614 6696 -1346 4049 118 44 16 chr3 132369271 132369951 -85667207 - L1PA15 LINE L1 -7 6158 5460 330 211 0 105 chr3 132369951 132369970 -85667188 + L1MC4 LINE L1 6696 6715 -1327 831 259 129 32 chr3 132370685 132371159 -85665999 - L1ME LINE L1 -356 5814 5295 1318 196 21 35 chr3 132371692 132371997 -85665161 + AluJb SINE Alu 1 301 0 349 265 77 8 chr3 132373461 132373578 -85663580 + L2 LINE L2 3189 3313 0 2091 121 7 23 chr3 132375226 132375533 -85661625 + AluSx SINE Alu 1 302 -10 308 331 71 19 chr3 132375834 132375988 -85661170 - MIR3 SINE MIR -41 167 6 1800 148 25 4 chr3 132376041 132376342 -85660816 + AluJo SINE Alu 1 307 0 500 307 58 21 chr3 132376960 132377149 -85660009 - MIR3 SINE MIR -7 201 6 1352 159 5 5 chr3 132377466 132377680 -85659478 + AluJb SINE Alu 85 298 -14 218 266 62 0 chr3 132378417 132378481 -85658677 + MIR3 SINE MIR 100 167 -41 243 0 0 0 chr3 132380112 132380139 -85657019 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 297 286 19 29 chr3 132380826 132380931 -85656227 + MIR3 SINE MIR 103 206 -2 893 141 0 0 chr3 132381322 132381450 -85655708 + FLAM_A SINE Alu 1 128 -5 1642 162 86 0 chr3 132381688 132381966 -85655192 + AluSp SINE Alu 1 302 -11 314 178 19 56 chr3 132384347 132384454 -85652704 - L1ME4a LINE L1 -56 6065 5963 1903 152 0 3 chr3 132387463 132387746 -85649412 + AluJb SINE Alu 1 282 -30 865 108 0 0 chr3 132388391 132388511 -85648647 + L1PA16 LINE L1 6038 6157 -9 2162 128 0 0 chr3 132389635 132389931 -85647227 + AluSx SINE Alu 1 296 -16 278 225 28 14 chr3 132390229 132390300 -85646858 + MER5B DNA MER1_type 38 109 -69 24 0 0 0 chr3 132391589 132391613 -85645545 + AT_rich Low_complexity Low_complexity 1 24 0 1558 156 22 18 chr3 132392259 132392576 -85644582 - AluSg SINE Alu 0 321 4 229 264 18 9 chr3 132392988 132393098 -85644060 + (TGGG)n Simple_repeat Simple_repeat 1 111 0 * 273 196 10 62 chr3 132393020 132393117 -85644041 + G-rich Low_complexity Low_complexity 4 95 0 510 136 37 0 chr3 132393237 132393318 -85643840 + FLAM_C SINE Alu 37 120 -23 240 35 0 0 chr3 132393318 132393347 -85643811 + (TAA)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr3 132393349 132393373 -85643785 + AT_rich Low_complexity Low_complexity 1 24 0 525 286 117 26 chr3 132394030 132394372 -85642786 + L1MC4a LINE L1 5529 5901 -1907 2393 74 0 0 chr3 132395584 132395881 -85641277 - AluY SINE Alu -14 297 1 1136 67 0 0 chr3 132395881 132396015 -85641143 - AluY SINE Alu -177 134 1 22 35 0 0 chr3 132396163 132396192 -85640966 + AT_rich Low_complexity Low_complexity 1 29 0 235 278 167 11 chr3 132396192 132396282 -85640876 - MIR SINE MIR -50 212 109 225 335 184 5 chr3 132396437 132396643 -85640515 + L3 LINE CR1 669 911 -666 616 318 123 39 chr3 132396837 132397302 -85639856 + L3 LINE CR1 1047 1550 -27 1585 173 19 42 chr3 132397375 132397688 -85639470 + AluJb SINE Alu 2 307 -5 1658 185 21 7 chr3 132398688 132398975 -85638183 - AluJo SINE Alu -12 300 10 1114 134 13 0 chr3 132399666 132399823 -85637335 + AluSg/x SINE Alu 138 296 -14 307 228 123 18 chr3 132400811 132400925 -85636233 - L1ME4a LINE L1 -3 6118 5993 2115 202 18 33 chr3 132401369 132401878 -85635280 - MER119 DNA MER1_type 0 583 83 1568 191 51 109 chr3 132402418 132402943 -85634215 + MLT1D LTR MaLR 3 497 -8 21 0 0 0 chr3 132403168 132403189 -85633969 + AT_rich Low_complexity Low_complexity 1 21 0 1399 155 124 4 chr3 132403891 132404149 -85633009 - AluJb SINE Alu -21 291 3 233 158 0 18 chr3 132404179 132404236 -85632922 + L1ME4a LINE L1 6049 6104 -17 317 268 175 48 chr3 132404298 132404696 -85632462 + L2 LINE L2 2759 3214 -99 207 100 0 0 chr3 132406397 132406427 -85630731 + (T)n Simple_repeat Simple_repeat 1 30 0 2165 119 3 3 chr3 132406855 132407157 -85630001 - AluSx SINE Alu -10 302 1 377 260 397 0 chr3 132407893 132408039 -85629119 + MIR SINE MIR 59 262 0 344 204 237 0 chr3 132408194 132408287 -85628871 + MIR SINE MIR 111 225 -37 2637 45 0 6 chr3 132408589 132408902 -85628256 - AluY SINE Alu 0 311 1 604 289 38 50 chr3 132408927 132409270 -85627888 + MLT1J2 LTR MaLR 1 339 -111 23 0 0 0 chr3 132409768 132409791 -85627367 + AT_rich Low_complexity Low_complexity 1 23 0 1816 162 0 17 chr3 132409938 132410235 -85626923 - AluJb SINE Alu -20 292 1 1628 198 83 3 chr3 132410362 132410700 -85626458 + MLT1A1 LTR MaLR 1 365 0 2164 130 7 0 chr3 132411420 132411721 -85625437 + AluSx SINE Alu 1 303 -9 836 266 131 69 chr3 132411737 132412936 -85624222 + L1M4 LINE L1 1075 2475 -4088 1642 174 11 0 chr3 132412936 132413200 -85623958 + AluJo SINE Alu 30 296 -16 5348 141 27 34 chr3 132413200 132413228 -85623930 + L1MA4 LINE L1 4985 5012 -1288 3672 94 10 8 chr3 132413228 132413740 -85623418 + MER75 DNA T2_type 2 514 0 5348 141 27 34 chr3 132413740 132415038 -85622120 + L1MA4 LINE L1 5012 6300 0 22 0 0 0 chr3 132415038 132415060 -85622098 + AT_rich Low_complexity Low_complexity 1 22 0 693 303 73 26 chr3 132415067 132415599 -85621559 + L1M4 LINE L1 4628 5285 -1097 896 202 5 67 chr3 132415599 132415822 -85621336 + MER3 DNA MER1_type 1 209 0 693 303 73 26 chr3 132415822 132415867 -85621291 + L1M4 LINE L1 5285 5326 -1056 245 284 0 0 chr3 132415880 132415954 -85621204 - L1M4b LINE L1 -5357 1502 1429 2404 64 17 3 chr3 132416067 132416362 -85620796 + AluY SINE Alu 1 299 -12 238 364 186 4 chr3 132416368 132416648 -85620510 + L2 LINE L2 2422 2752 -562 825 201 0 0 chr3 132419404 132419548 -85617610 + FRAM SINE Alu 13 156 -20 322 230 124 35 chr3 132419598 132419711 -85617447 - L1ME4a LINE L1 -183 5938 5816 575 172 0 0 chr3 132420070 132420163 -85616995 + AluJ/FLAM SINE Alu 1 93 -219 576 200 195 45 chr3 132420566 132420766 -85616392 - MIR SINE MIR -18 244 15 261 180 49 115 chr3 132421070 132421192 -85615966 + Charlie2b DNA MER1_type 122 235 -2547 25 51 0 0 chr3 132421224 132421263 -85615895 + AT_rich Low_complexity Low_complexity 1 39 0 1610 302 57 12 chr3 132421341 132421934 -85615224 + Charlie2b DNA MER1_type 358 977 -1805 3106 204 70 58 chr3 132421944 132422508 -85614650 - L1ME1 LINE L1 -5 6161 5605 2372 165 33 58 chr3 132422508 132422980 -85614178 + LTR54 LTR ERV1 1 460 -50 300 52 0 52 chr3 132422980 132423038 -85614120 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 2372 165 33 58 chr3 132423038 132423086 -85614072 + LTR54 LTR ERV1 460 508 -2 3106 204 70 58 chr3 132423086 132423199 -85613959 - L1ME1 LINE L1 -561 5605 5495 2002 142 19 10 chr3 132423199 132423508 -85613650 - AluSx SINE Alu 0 312 1 3106 204 70 58 chr3 132423508 132423709 -85613449 - L1ME1 LINE L1 -671 5495 5298 604 203 65 0 chr3 132423709 132423832 -85613326 - FLAM_A SINE Alu 0 133 3 3106 204 70 58 chr3 132423832 132424058 -85613100 - L1ME1 LINE L1 -868 5298 5030 356 203 181 44 chr3 132424059 132424241 -85612917 + Charlie2b DNA MER1_type 988 1194 -1588 1563 184 141 6 chr3 132424369 132424886 -85612272 + Charlie2b DNA MER1_type 2183 2769 -13 2133 130 0 3 chr3 132426268 132426575 -85610583 + AluSx SINE Alu 1 306 -6 290 230 122 56 chr3 132426824 132426941 -85610217 + L1ME3A LINE L1 5574 5711 -410 2100 123 0 23 chr3 132426941 132427241 -85609917 + AluJb SINE Alu 20 312 0 290 230 122 56 chr3 132427241 132427319 -85609839 + L1ME3A LINE L1 5711 5782 -339 2244 125 0 3 chr3 132427668 132427972 -85609186 - AluSq SINE Alu -10 303 1 1945 162 3 3 chr3 132428788 132429084 -85608074 + AluJo SINE Alu 1 296 -16 255 223 237 14 chr3 132430322 132430461 -85606697 + L1ME4a LINE L1 5631 5800 -321 1962 106 4 15 chr3 132430756 132431029 -85606129 - AluSx SINE Alu -4 308 39 477 263 96 26 chr3 132431030 132431300 -85605858 + L1ME4a LINE L1 5832 6120 -1 299 261 19 38 chr3 132431412 132431569 -85605589 - HAL1 LINE L1 -325 2182 2029 287 293 69 17 chr3 132431572 132431746 -85605412 + L1ME3A LINE L1 5988 6170 0 1356 222 164 90 chr3 132431779 132432536 -85604622 - HAL1 LINE L1 -473 2034 1123 281 122 41 0 chr3 132432536 132432585 -85604573 - U5 snRNA snRNA -65 51 1 1356 222 164 90 chr3 132432585 132432888 -85604270 - HAL1 LINE L1 -1384 1123 844 309 310 147 43 chr3 132432990 132433174 -85603984 - HAL1 LINE L1 -1673 834 632 285 210 0 0 chr3 132433174 132433236 -85603922 + GA-rich Low_complexity Low_complexity 2 63 0 372 315 35 30 chr3 132433340 132433540 -85603618 - HAL1 LINE L1 -2001 506 306 247 194 60 0 chr3 132433822 132433889 -85603269 + L1ME4a LINE L1 6047 6117 -4 306 0 0 0 chr3 132434213 132434247 -85602911 + (TG)n Simple_repeat Simple_repeat 2 35 0 1733 184 3 0 chr3 132434481 132434809 -85602349 + AluJb SINE Alu 1 329 0 261 57 0 0 chr3 132435752 132435787 -85601371 + (TG)n Simple_repeat Simple_repeat 2 36 0 2783 16 0 3 chr3 132437014 132437317 -85599841 + AluYa5 SINE Alu 1 302 -9 22 88 0 0 chr3 132439578 132439635 -85597523 + GC_rich Low_complexity Low_complexity 1 57 0 213 298 24 48 chr3 132440665 132440749 -85596409 - L2 LINE L2 0 3272 3191 566 244 50 67 chr3 132440938 132441118 -85596040 + MIR SINE MIR 30 206 -56 1586 151 96 11 chr3 132441141 132441413 -85595745 + AluJb SINE Alu 1 295 -17 497 234 127 0 chr3 132441433 132441591 -85595567 - MIR SINE MIR -33 229 52 521 246 45 8 chr3 132442497 132442631 -85594527 - MIR SINE MIR -1 261 123 447 284 110 26 chr3 132442802 132442846 -85594312 - MIR3 SINE MIR -2 206 167 604 150 170 26 chr3 132442846 132442999 -85594159 - MER5B DNA MER1_type -3 175 1 447 284 110 26 chr3 132442999 132443109 -85594049 - MIR3 SINE MIR -41 167 39 363 276 27 65 chr3 132444797 132444982 -85592176 - MER5B DNA MER1_type 0 178 1 225 0 0 0 chr3 132445483 132445508 -85591650 + (T)n Simple_repeat Simple_repeat 1 25 0 292 331 77 0 chr3 132445513 132445682 -85591476 + L3 LINE CR1 1255 1436 -141 435 321 54 71 chr3 132447048 132447232 -85589926 - MIR SINE MIR -48 214 34 526 269 154 10 chr3 132448147 132448355 -85588803 - MIR SINE MIR -7 255 18 309 240 54 87 chr3 132449367 132449561 -85587597 - MIR SINE MIR -46 216 28 548 236 82 31 chr3 132450509 132450704 -85586454 + MER112 DNA MER1_type 1 205 -55 585 309 136 41 chr3 132450855 132451511 -85585647 + L2 LINE L2 2538 3253 -19 1411 106 35 31 chr3 132451762 132451876 -85585282 + MER30 DNA MER1_type 4 116 -114 2385 96 0 6 chr3 132451876 132452189 -85584969 + AluY SINE Alu 1 311 0 1411 106 35 31 chr3 132452189 132452300 -85584858 + MER30 DNA MER1_type 116 230 0 212 194 0 0 chr3 132452498 132452534 -85584624 - L3 LINE CR1 -3 1574 1539 803 216 52 47 chr3 132453349 132453528 -85583630 - MIR SINE MIR -2 260 78 568 113 0 0 chr3 132453528 132453608 -85583550 + MADE1 DNA Mariner 1 80 0 803 216 52 47 chr3 132453608 132453641 -85583517 - MIR SINE MIR -184 78 47 1716 170 0 27 chr3 132453682 132453982 -85583176 - AluJo SINE Alu -20 292 1 777 198 0 69 chr3 132454725 132454927 -85582231 - MER53 DNA DNA -1 188 1 255 234 128 11 chr3 132456037 132456131 -85581027 - MIR SINE MIR -68 140 36 589 307 50 5 chr3 132457199 132457401 -85579757 - MIR SINE MIR -32 230 20 23 0 0 0 chr3 132457523 132457546 -85579612 + AT_rich Low_complexity Low_complexity 1 23 0 856 228 151 48 chr3 132457552 132457902 -85579256 - HAL1 LINE L1 -2 2505 2086 1732 219 140 46 chr3 132457902 132458579 -85578579 - HsTC2a DNA MER2_type 0 744 4 856 228 151 48 chr3 132458579 132458733 -85578425 - HAL1 LINE L1 -421 2086 1949 1788 181 0 22 chr3 132458734 132458840 -85578318 - AluJo SINE Alu -2 310 203 3467 91 7 7 chr3 132458840 132459300 -85577858 + LTR46 LTR ERV1 1 460 0 1788 181 0 22 chr3 132459300 132459508 -85577650 - AluJo SINE Alu -109 203 3 2119 219 144 23 chr3 132459544 132460323 -85576835 - HAL1 LINE L1 -569 1938 1066 2376 85 3 0 chr3 132460403 132460697 -85576461 - AluSx SINE Alu -17 295 1 1094 213 150 36 chr3 132460700 132461193 -85575965 + L1MC5 LINE L1 7107 7655 -306 785 196 46 17 chr3 132461208 132461381 -85575777 + AluJo SINE Alu 123 300 -12 534 223 98 26 chr3 132461381 132461574 -85575584 + L1MC5 LINE L1 7703 7909 -52 413 263 92 37 chr3 132461591 132461808 -85575350 - HAL1 LINE L1 -1658 849 621 2156 118 6 10 chr3 132462169 132462483 -85574675 - AluSq SINE Alu 0 313 1 334 314 51 58 chr3 132462483 132462639 -85574519 - HAL1 LINE L1 -2333 174 20 311 333 77 13 chr3 132463045 132463201 -85573957 + L2 LINE L2 1831 1996 -1318 294 29 0 0 chr3 132464739 132464774 -85572384 + (TGGA)n Simple_repeat Simple_repeat 1 35 0 203 250 0 0 chr3 132464794 132464834 -85572324 + (TGGA)n Simple_repeat Simple_repeat 4 43 0 191 289 89 33 chr3 132465087 132465177 -85571981 + L2 LINE L2 3204 3298 -15 * 199 184 0 26 chr3 132465146 132465184 -85571974 + MIR SINE MIR 223 259 -3 358 215 172 0 chr3 132465543 132465636 -85571522 - MER81 DNA DNA -5 109 1 443 236 126 21 chr3 132466090 132466285 -85570873 - MIR SINE MIR -51 211 1 410 234 16 62 chr3 132467895 132468023 -85569135 + MIR SINE MIR 79 200 -62 260 288 0 0 chr3 132468087 132468153 -85569005 + MIR SINE MIR 185 250 -12 991 174 21 11 chr3 132468221 132468411 -85568747 + L1MD2 LINE L1 6154 6345 -14 26 0 0 0 chr3 132468615 132468641 -85568517 + AT_rich Low_complexity Low_complexity 1 26 0 247 226 24 71 chr3 132468662 132468746 -85568412 - MIR SINE MIR -80 182 103 375 293 5 83 chr3 132469002 132469149 -85568009 + MIR3 SINE MIR 17 145 -63 724 216 105 0 chr3 132469149 132469320 -85567838 - MER5A DNA MER1_type 0 189 1 375 293 5 83 chr3 132469320 132469377 -85567781 + MIR3 SINE MIR 145 205 -3 645 321 75 12 chr3 132470211 132470635 -85566523 + L2 LINE L2 2383 2833 -481 222 205 133 72 chr3 132470830 132470913 -85566245 + L2 LINE L2 3029 3116 -156 300 70 0 0 chr3 132471469 132471512 -85565646 + (GA)n Simple_repeat Simple_repeat 1 43 0 181 261 148 11 chr3 132473027 132473115 -85564043 - L2 LINE L2 -3 3269 3170 225 293 12 24 chr3 132473204 132473286 -85563872 + L2 LINE L2 3188 3268 -4 1114 261 56 47 chr3 132475493 132475872 -85561286 + L1MC5 LINE L1 4902 5296 -1165 2594 207 36 47 chr3 132475872 132476571 -85560587 + LTR8 LTR ERV1 1 691 0 1114 261 56 47 chr3 132476571 132476929 -85560229 + L1MC5 LINE L1 5296 5649 -812 1107 222 82 3 chr3 132476933 132477226 -85559932 + MER5C DNA MER1_type 6 321 -3 602 281 11 6 chr3 132477234 132477412 -85559746 + L1MC5 LINE L1 5648 5826 -1982 1075 173 0 17 chr3 132477412 132477591 -85559567 - AluJb SINE Alu -2 310 135 326 237 14 22 chr3 132477681 132477820 -85559338 + L1MC5 LINE L1 5872 6009 -1799 199 219 31 62 chr3 132478105 132478169 -85558989 + MIR3 SINE MIR 108 169 -39 2266 121 0 0 chr3 132478426 132478724 -85558434 - AluSq SINE Alu -15 298 1 24 32 0 0 chr3 132478733 132478764 -85558394 + AT_rich Low_complexity Low_complexity 1 31 0 1191 194 0 10 chr3 132478851 132479047 -85558111 + AluJo SINE Alu 1 194 -118 319 296 76 24 chr3 132479075 132479287 -85557871 + L1P4 LINE L1 5574 5802 -372 1171 219 128 63 chr3 132479335 132480001 -85557157 + L1MC5 LINE L1 7223 7931 -30 1571 52 0 6 chr3 132480369 132480378 -85556780 + (G)n Simple_repeat Simple_repeat 1 376 0 1571 52 0 6 chr3 132480378 132480748 -85556410 + (G)n Simple_repeat Simple_repeat 1 367 0 227 351 43 0 chr3 132531515 132531609 -85505549 - L2 LINE L2 -20 3293 3196 229 240 31 52 chr3 132531754 132531850 -85505308 - MLT1L LTR MaLR -13 602 509 2193 104 0 13 chr3 132531963 132532282 -85504876 + AluSg SINE Alu 1 310 0 230 180 180 0 chr3 132532564 132532625 -85504533 + LTR37B LTR ERV1 324 395 -73 2285 146 56 17 chr3 132532782 132533194 -85503964 - MSTC LTR MaLR 0 428 1 278 272 57 15 chr3 132534619 132534746 -85502412 - MIR SINE MIR -77 131 21 1257 184 0 9 chr3 132535062 132535279 -85501879 + AluJo SINE Alu 87 301 -11 283 259 46 9 chr3 132535723 132535831 -85501327 - MER5B DNA MER1_type -17 161 50 1775 76 20 8 chr3 132536648 132536898 -85500260 + AluY SINE Alu 55 307 -4 1141 192 270 17 chr3 132537081 132537636 -85499522 + L1MC4 LINE L1 7258 8041 -1 2466 91 0 0 chr3 132537963 132538261 -85498897 + AluSg SINE Alu 1 298 -12 375 23 0 0 chr3 132538486 132538530 -85498628 + (TG)n Simple_repeat Simple_repeat 1 44 0 721 273 68 0 chr3 132538701 132538921 -85498237 - MIR SINE MIR 0 262 28 232 288 128 8 chr3 132539498 132539623 -85497535 - MER112 DNA MER1_type 0 260 121 285 253 108 0 chr3 132539736 132539819 -85497339 - MIR SINE MIR -111 151 60 261 249 312 31 chr3 132540360 132540841 -85496317 + L2 LINE L2 1689 2304 -1010 322 211 18 21 chr3 132540855 132541024 -85496134 - LTR37B LTR ERV1 -5 463 239 416 218 203 8 chr3 132541641 132541774 -85495384 + MIR SINE MIR 104 262 0 1096 147 22 0 chr3 132542305 132542489 -85494669 + MER5A DNA MER1_type 2 189 0 476 202 0 10 chr3 132542554 132542653 -85494505 - MER5B DNA MER1_type -31 147 50 454 229 44 55 chr3 132542666 132542849 -85494309 - L1MC4 LINE L1 -1 8041 7861 2295 112 0 0 chr3 132542892 132543188 -85493970 + AluSx SINE Alu 1 296 -16 181 293 75 88 chr3 132543276 132543423 -85493735 - L2 LINE L2 -2831 483 339 670 212 20 20 chr3 132543457 132543608 -85493550 - MER53 DNA DNA -38 151 1 576 181 9 0 chr3 132543723 132543839 -85493319 - MLT2D LTR ERVL -297 117 1 394 346 16 11 chr3 132543841 132544029 -85493129 - MER5A DNA MER1_type 0 189 1 2403 90 3 0 chr3 132546303 132546602 -85490556 + AluSp SINE Alu 1 300 -13 1744 164 17 6 chr3 132546764 132547112 -85490046 - L1MB3 LINE L1 0 6183 5832 1419 25 6 0 chr3 132549709 132549871 -85487287 + AluY SINE Alu 149 311 0 230 279 13 13 chr3 132550014 132550093 -85487065 + GA-rich Low_complexity Low_complexity 5 83 0 592 245 0 0 chr3 132550723 132550866 -85486292 + L1PA16 LINE L1 6024 6166 0 1749 152 25 41 chr3 132551330 132551645 -85485513 + AluJo SINE Alu 1 310 -2 315 0 0 0 chr3 132552463 132552498 -85484660 + (CA)n Simple_repeat Simple_repeat 1 35 0 352 155 0 0 chr3 132552957 132553015 -85484143 + L2 LINE L2 3227 3284 -29 240 128 0 43 chr3 132554064 132554111 -85483047 + Charlie8 DNA MER1_type 1384 1428 -989 231 309 48 12 chr3 132554565 132554649 -85482509 + L2 LINE L2 3170 3256 -16 274 252 10 29 chr3 132556900 132557003 -85480155 + GA-rich Low_complexity Low_complexity 1 101 0 314 209 45 0 chr3 132557533 132557600 -85479558 + MIR SINE MIR 106 175 -87 504 0 0 0 chr3 132559763 132559819 -85477339 + (TC)n Simple_repeat Simple_repeat 1 56 0 225 0 0 0 chr3 132560150 132560175 -85476983 + (TTCC)n Simple_repeat Simple_repeat 1 25 0 348 320 40 55 chr3 132560219 132560491 -85476667 - L2 LINE L2 -108 3164 2897 444 346 16 5 chr3 132560558 132560743 -85476415 + MIR3 SINE MIR 17 203 -5 2003 250 154 10 chr3 132560900 132561850 -85475308 + L2 LINE L2 2165 3271 -42 193 179 26 0 chr3 132561909 132561948 -85475210 - MIR SINE MIR -109 153 114 2486 84 0 3 chr3 132562770 132563080 -85474078 + AluSp SINE Alu 1 309 -4 264 306 60 37 chr3 132564419 132564553 -85472605 + L3b LINE CR1 1249 1385 -198 187 337 54 22 chr3 132564559 132564651 -85472507 + MIR3 SINE MIR 107 201 -7 222 227 0 0 chr3 132564883 132564927 -85472231 + (CATATA)n Simple_repeat Simple_repeat 4 47 0 514 235 85 26 chr3 132565923 132566076 -85471082 + MER5B DNA MER1_type 17 178 0 1119 243 56 3 chr3 132566353 132566657 -85470501 - L1ME4a LINE L1 -173 5948 5629 485 251 18 101 chr3 132567026 132567130 -85470028 - MIR SINE MIR -14 248 170 1734 184 25 0 chr3 132567130 132567412 -85469746 - AluJb SINE Alu -23 289 1 485 251 18 101 chr3 132567412 132567526 -85469632 - MIR SINE MIR -92 170 48 345 343 27 7 chr3 132568018 132568164 -85468994 + L3 LINE CR1 868 1016 -561 513 194 29 112 chr3 132568647 132568792 -85468366 + MER5A DNA MER1_type 1 126 -63 2262 120 0 13 chr3 132568792 132569100 -85468058 - AluSx SINE Alu -8 304 1 513 194 29 112 chr3 132569100 132569160 -85467998 + MER5A DNA MER1_type 126 189 0 1581 181 8 50 chr3 132569457 132569538 -85467620 - MER2 DNA MER2_type 0 344 261 2461 61 17 0 chr3 132569538 132569835 -85467323 + AluY SINE Alu 1 302 -9 1549 203 7 30 chr3 132569844 132570139 -85467019 + AluJo SINE Alu 1 288 -24 180 0 0 0 chr3 132570139 132570159 -85466999 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 1581 181 8 50 chr3 132570159 132570425 -85466733 - MER2 DNA MER2_type -89 255 1 1315 346 152 19 chr3 132570906 132571467 -85465691 - L3 LINE CR1 -67 1510 1024 2465 171 31 4 chr3 132571467 132571922 -85465236 - MLT1C LTR MaLR 0 467 1 1315 346 152 19 chr3 132571922 132572548 -85464610 - L3 LINE CR1 -553 1024 166 603 253 28 52 chr3 132573099 132573316 -85463842 + MIR SINE MIR 19 229 -33 251 268 24 12 chr3 132573421 132573503 -85463655 - MIR SINE MIR -14 248 166 431 218 209 29 chr3 132574477 132574683 -85462475 - MIR SINE MIR 0 262 20 2376 99 0 3 chr3 132575896 132576198 -85460960 - AluSc SINE Alu -8 301 1 469 280 160 11 chr3 132576290 132576500 -85460658 - MIR SINE MIR -28 234 2 182 329 35 24 chr3 132576635 132576720 -85460438 - MER5B DNA MER1_type -63 115 30 207 223 165 74 chr3 132576779 132576900 -85460258 + L2 LINE L2 3138 3269 -3 282 95 0 0 chr3 132577177 132577219 -85459939 + (CA)n Simple_repeat Simple_repeat 1 42 0 211 185 0 46 chr3 132578139 132578204 -85458954 + CT-rich Low_complexity Low_complexity 2 63 0 320 309 71 16 chr3 132578301 132578427 -85458731 - L2 LINE L2 -6 3307 3175 487 312 91 10 chr3 132580149 132580348 -85456810 + MIR SINE MIR 47 261 -1 2302 121 0 3 chr3 132580587 132580894 -85456264 - AluSc SINE Alu -3 306 1 2175 115 7 0 chr3 132581297 132581592 -85455566 + AluSq SINE Alu 1 297 -16 540 278 23 36 chr3 132581711 132581921 -85455237 + MIR3 SINE MIR 3 208 0 406 265 63 46 chr3 132582307 132582501 -85454657 - MIR SINE MIR -54 154 11 195 129 0 0 chr3 132583147 132583178 -85453980 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 266 233 22 33 chr3 132583422 132583512 -85453646 + GA-rich Low_complexity Low_complexity 1 89 0 196 289 115 18 chr3 132583519 132583700 -85453458 + MIR SINE MIR 6 200 -58 272 277 125 0 chr3 132585028 132585140 -85452018 - MIR SINE MIR -63 145 20 486 289 34 7 chr3 132585955 132586104 -85451054 - MIR SINE MIR -35 227 75 944 200 42 23 chr3 132589225 132589440 -85447718 - MER20 DNA MER1_type 0 219 1 200 194 0 0 chr3 132590185 132590221 -85446937 + (TG)n Simple_repeat Simple_repeat 2 37 0 207 0 0 0 chr3 132590365 132590388 -85446770 + (CTG)n Simple_repeat Simple_repeat 2 24 0 229 226 26 104 chr3 132592536 132592616 -85444542 + MIR3 SINE MIR 78 148 -60 746 223 22 0 chr3 132592616 132592800 -85444358 + MER5A DNA MER1_type 1 188 -1 229 226 26 104 chr3 132592800 132592834 -85444324 + MIR3 SINE MIR 148 183 -25 1963 142 13 31 chr3 132594254 132594572 -85442586 + AluJo SINE Alu 1 312 0 1872 179 37 2 chr3 132594632 132595041 -85442117 + L1MB3 LINE L1 5759 6181 -2 21 36 0 0 chr3 132595076 132595104 -85442054 + AT_rich Low_complexity Low_complexity 1 28 0 512 219 123 32 chr3 132595327 132595482 -85441676 - MER5B DNA MER1_type 0 178 10 901 260 20 12 chr3 132595483 132595729 -85441429 + MIR SINE MIR 15 262 0 328 356 7 22 chr3 132596676 132596811 -85440347 - MIR3 SINE MIR -34 174 42 333 227 93 0 chr3 132597450 132597525 -85439633 + L2 LINE L2 3190 3271 -1 205 316 0 0 chr3 132599515 132599572 -85437586 + L2 LINE L2 3207 3263 -9 245 95 0 24 chr3 132599656 132599698 -85437460 + (GAAAA)n Simple_repeat Simple_repeat 1 41 0 552 231 69 0 chr3 132599775 132599905 -85437253 + MIR SINE MIR 76 214 -48 241 169 75 0 chr3 132599957 132600039 -85437119 + L1ME LINE L1 5377 5431 -690 1905 145 0 33 chr3 132600056 132600360 -85436798 + AluJo SINE Alu 1 294 -18 213 238 12 38 chr3 132601729 132601809 -85435349 + (TAGA)n Simple_repeat Simple_repeat 1 78 0 1023 303 94 33 chr3 132602207 132602479 -85434679 + MLT1L LTR MaLR 1 234 -277 2016 104 45 0 chr3 132602479 132602784 -85434374 + AluSg SINE Alu 1 317 0 1023 303 94 33 chr3 132602784 132603052 -85434106 + MLT1L LTR MaLR 234 484 -27 2260 102 0 13 chr3 132603106 132603409 -85433749 + AluSg SINE Alu 1 299 -11 287 346 39 31 chr3 132604505 132604632 -85432526 + MIR SINE MIR 65 192 -70 325 298 113 33 chr3 132605178 132605329 -85431829 - L2 LINE L2 0 3272 3110 577 267 42 6 chr3 132606174 132606339 -85430819 - MIR3 SINE MIR -10 198 28 2523 70 3 0 chr3 132606413 132606712 -85430446 - AluSp SINE Alu -13 300 1 1037 266 36 14 chr3 132606901 132607314 -85429844 - L1ME4a LINE L1 -199 5922 5545 423 344 32 0 chr3 132607533 132607690 -85429468 - MER5B DNA MER1_type -16 162 1 978 161 6 0 chr3 132607985 132608146 -85429012 + FRAM SINE Alu 1 162 -4 245 311 116 16 chr3 132608149 132608339 -85428819 + L1MC4a LINE L1 5725 5933 -1875 2584 86 0 0 chr3 132608408 132608721 -85428437 + AluSp SINE Alu 1 313 0 198 275 12 62 chr3 132608984 132609064 -85428094 - MIR SINE MIR -83 179 104 43 76 0 0 chr3 132610005 132610097 -85427061 + AT_rich Low_complexity Low_complexity 1 92 0 2175 133 3 19 chr3 132610118 132610435 -85426723 - AluJb SINE Alu 0 312 1 326 279 36 42 chr3 132610453 132610619 -85426539 - MIR SINE MIR -58 150 5 454 128 32 21 chr3 132610768 132610862 -85426296 + L1ME3A LINE L1 6074 6168 -2 230 340 56 7 chr3 132610976 132611120 -85426038 + L2 LINE L2 2636 2786 -528 304 283 162 26 chr3 132611184 132611397 -85425761 + MIR SINE MIR 15 262 0 1931 174 78 23 chr3 132612035 132612471 -85424687 + MLT1C LTR MaLR 1 460 -7 237 108 0 0 chr3 132612570 132612607 -85424551 + (CAT)n Simple_repeat Simple_repeat 3 39 0 740 257 105 5 chr3 132612607 132612817 -85424341 - MIR SINE MIR -6 256 26 367 157 118 59 chr3 132614647 132614749 -85422409 - LTR67 LTR ERVL -1 556 449 1949 152 3 7 chr3 132614751 132615048 -85422110 + AluJo SINE Alu 1 296 -16 2375 218 18 32 chr3 132615059 132615499 -85421659 - MLT1F1 LTR MaLR 0 567 135 2309 115 0 0 chr3 132615499 132615804 -85421354 - AluSx SINE Alu -7 305 1 2375 218 18 32 chr3 132615804 132615933 -85421225 - MLT1F1 LTR MaLR -432 135 6 229 245 0 20 chr3 132616146 132616195 -85420963 - LTR67 LTR ERVL -382 175 128 371 195 69 0 chr3 132616333 132616420 -85420738 - MER21B LTR ERV1 -113 750 658 273 253 161 11 chr3 132617702 132617789 -85419369 - L2 LINE L2 -5 3308 3209 276 185 0 0 chr3 132617812 132617866 -85419292 + (TG)n Simple_repeat Simple_repeat 2 55 0 614 242 76 0 chr3 132617977 132618134 -85419024 - MIR SINE MIR -48 214 46 3617 155 19 13 chr3 132618151 132618843 -85418315 - L1MB2 LINE L1 0 6171 5476 405 156 31 10 chr3 132618857 132618953 -85418205 + CT-rich Low_complexity Low_complexity 3 100 0 694 135 11 49 chr3 132618971 132619156 -85418002 + CT-rich Low_complexity Low_complexity 3 180 0 1910 179 87 2 chr3 132619156 132619325 -85417833 - L1MB2 LINE L1 -709 5474 5321 405 0 0 0 chr3 132619325 132619370 -85417788 + (TG)n Simple_repeat Simple_repeat 1 45 0 1910 179 87 2 chr3 132619370 132619744 -85417414 - L1MB2 LINE L1 -862 5321 4905 986 152 52 5 chr3 132619749 132619940 -85417218 - L1MB3 LINE L1 -40 6143 5944 2454 86 81 8 chr3 132620399 132620796 -85416362 - MSTA LTR MaLR -2 426 1 747 212 104 36 chr3 132620821 132621043 -85416115 - L1ME3A LINE L1 -66 6104 5868 1085 216 105 41 chr3 132621724 132621777 -85415381 - L1ME2 LINE L1 -62 6104 6056 1844 168 14 0 chr3 132621777 132622074 -85415084 + AluJo SINE Alu 1 301 -11 1085 216 105 41 chr3 132622074 132622308 -85414850 - L1ME2 LINE L1 -110 6056 5838 210 37 0 0 chr3 132622308 132622335 -85414823 + (TC)n Simple_repeat Simple_repeat 2 28 0 1085 216 105 41 chr3 132622335 132622410 -85414748 - L1ME2 LINE L1 -328 5838 5769 1937 153 36 43 chr3 132622410 132622803 -85414355 - MLT1B LTR MaLR 0 390 1 1085 216 105 41 chr3 132622803 132622849 -85414309 - L1ME2 LINE L1 -397 5769 5674 442 173 12 0 chr3 132622855 132622936 -85414222 - L1ME2 LINE L1 -585 5579 5498 193 152 60 147 chr3 132622938 132623059 -85414099 - MIR SINE MIR -62 146 32 704 304 123 38 chr3 132623107 132623910 -85413248 - L2 LINE L2 0 3313 2440 195 154 26 0 chr3 132624013 132624052 -85413106 + L2 LINE L2 3273 3312 -1 1974 133 59 9 chr3 132624079 132624402 -85412756 - MER1B DNA MER1_type 0 339 1 2972 147 32 39 chr3 132624459 132624798 -85412360 - L1MB5 LINE L1 -12 6162 5827 1588 188 56 3 chr3 132624798 132624964 -85412194 - AluJo SINE Alu -9 303 114 194 0 0 37 chr3 132624964 132624991 -85412167 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1588 188 56 3 chr3 132624991 132625112 -85412046 - AluJo SINE Alu -198 114 1 2972 147 32 39 chr3 132625112 132625370 -85411788 - L1MB5 LINE L1 -347 5827 5569 341 276 35 0 chr3 132625468 132625555 -85411603 + MIR SINE MIR 63 152 -110 329 292 100 0 chr3 132626555 132626685 -85410473 + MIR SINE MIR 50 192 -70 185 373 40 60 chr3 132627448 132627746 -85409412 - L2 LINE L2 -3 3269 2978 366 288 8 16 chr3 132628085 132628210 -85408948 + L1ME4a LINE L1 5676 5799 -322 1434 205 25 30 chr3 132628219 132628580 -85408578 - MLT1A1 LTR MaLR 0 365 7 2463 96 0 0 chr3 132628581 132628893 -85408265 + AluSx SINE Alu 1 312 0 359 262 33 74 chr3 132628927 132629049 -85408109 + L1ME4a LINE L1 5782 5898 -223 419 213 59 22 chr3 132629080 132629216 -85407942 + L1ME4a LINE L1 5977 6117 -4 42 36 0 0 chr3 132629872 132629928 -85407230 + AT_rich Low_complexity Low_complexity 1 56 0 487 294 44 0 chr3 132629945 132630105 -85407053 - MIR3 SINE MIR -39 169 3 234 319 43 9 chr3 132630536 132630652 -85406506 + L2 LINE L2 3153 3272 0 389 273 200 0 chr3 132631016 132631166 -85405992 + MIR SINE MIR 71 250 -12 303 28 0 0 chr3 132631686 132631722 -85405436 + (TG)n Simple_repeat Simple_repeat 1 36 0 326 300 169 42 chr3 132632937 132633174 -85403984 - L2 LINE L2 -12 3301 3035 1515 147 55 103 chr3 132633174 132633611 -85403547 - Charlie4a DNA MER1_type -51 457 42 561 292 108 57 chr3 132633742 132633994 -85403164 - L1ME LINE L1 -431 5731 5466 1082 262 73 21 chr3 132634903 132635288 -85401870 - MLT1J LTR MaLR -30 481 77 254 321 154 25 chr3 132635367 132635529 -85401629 - MIR3 SINE MIR -17 191 9 657 260 50 0 chr3 132636447 132636628 -85400530 + MIR SINE MIR 33 222 -40 505 311 35 22 chr3 132636846 132637074 -85400084 - MIR SINE MIR -12 250 20 205 156 0 0 chr3 132637849 132637881 -85399277 + (TTG)n Simple_repeat Simple_repeat 3 34 0 198 200 0 0 chr3 132639348 132639388 -85397770 - L2 LINE L2 -14 3258 3219 345 322 45 23 chr3 132640386 132640563 -85396595 - MIR SINE MIR -50 212 32 267 256 84 0 chr3 132640573 132640659 -85396499 + MIR SINE MIR 17 106 -102 3478 253 81 56 chr3 132640690 132641326 -85395832 - HAL1 LINE L1 -545 1962 1343 640 217 16 0 chr3 132641326 132641455 -85395703 - FLAM_A SINE Alu -2 131 1 3478 253 81 56 chr3 132641455 132642502 -85394656 - HAL1 LINE L1 -1164 1343 237 1382 176 71 22 chr3 132642754 132643077 -85394081 + MER2 DNA MER2_type 7 345 0 221 358 33 33 chr3 132646884 132647004 -85390154 - MIR SINE MIR -59 149 30 207 0 0 0 chr3 132647401 132647424 -85389734 + (TG)n Simple_repeat Simple_repeat 1 23 0 292 253 63 44 chr3 132649217 132649359 -85387799 + MIR SINE MIR 56 191 -63 2394 103 3 0 chr3 132649610 132649911 -85387247 + AluSp SINE Alu 1 302 -11 481 277 0 0 chr3 132649940 132650059 -85387099 + MIR SINE MIR 30 148 -60 1652 162 42 11 chr3 132650348 132650632 -85386526 - AluJb SINE Alu -19 293 1 218 204 0 20 chr3 132653188 132653237 -85383921 + (CA)n Simple_repeat Simple_repeat 1 48 0 409 236 57 16 chr3 132653418 132653541 -85383617 - L2 LINE L2 0 3313 3186 934 191 33 6 chr3 132655337 132655520 -85381638 - MER5A DNA MER1_type -1 188 1 334 268 39 39 chr3 132655779 132655906 -85381252 - MER5B DNA MER1_type -41 137 11 2572 84 0 0 chr3 132656043 132656354 -85380804 - AluSx SINE Alu -1 311 1 210 150 0 0 chr3 132657751 132657791 -85379367 + (TCTCCC)n Simple_repeat Simple_repeat 1 40 0 309 51 0 0 chr3 132659874 132659913 -85377245 + (CA)n Simple_repeat Simple_repeat 1 39 0 786 153 0 8 chr3 132661553 132661684 -85375474 + FLAM_A SINE Alu 1 130 -3 1768 160 18 11 chr3 132661947 132662228 -85374930 - AluJo SINE Alu -16 296 14 603 288 86 12 chr3 132662837 132663164 -85373994 - L1ME4a LINE L1 -21 6100 5750 188 259 0 17 chr3 132663432 132663490 -85373668 - MIR SINE MIR -5 257 201 324 189 11 44 chr3 132663860 132663950 -85373208 + MIR3 SINE MIR 98 184 -24 465 235 42 0 chr3 132664759 132664878 -85372280 + MIR3 SINE MIR 34 157 -51 359 190 15 95 chr3 132664881 132665018 -85372140 + MER112 DNA MER1_type 1 126 -134 795 219 84 0 chr3 132665116 132665294 -85371864 + MER58A DNA MER1_type 2 194 -30 2270 102 0 40 chr3 132665727 132666052 -85371106 - AluSx SINE Alu 0 312 1 296 287 107 8 chr3 132666567 132666689 -85370469 - MIR SINE MIR -70 192 59 309 276 22 60 chr3 132667642 132667776 -85369382 - MIR SINE MIR -114 148 20 410 296 91 28 chr3 132668686 132668862 -85368296 - MIR3 SINE MIR -5 203 17 214 310 45 45 chr3 132669187 132669342 -85367816 + L2 LINE L2 3116 3270 -2 2399 160 24 47 chr3 132670341 132670567 -85366591 - L1MB2 LINE L1 0 6171 5941 225 0 0 0 chr3 132670567 132670592 -85366566 + (TA)n Simple_repeat Simple_repeat 1 25 0 700 192 0 0 chr3 132670596 132670716 -85366442 - FLAM_A SINE Alu -13 120 1 2399 160 24 47 chr3 132670716 132671022 -85366136 - L1MB2 LINE L1 -233 5938 5646 262 330 97 0 chr3 132671871 132671974 -85365184 + L2 LINE L2 3156 3268 -4 1780 159 27 17 chr3 132672161 132672456 -85364702 + AluJo SINE Alu 1 298 -14 452 265 27 27 chr3 132673442 132673589 -85363569 + MIR SINE MIR 48 194 -68 180 388 60 9 chr3 132673815 132673931 -85363227 + L2 LINE L2 2250 2371 -943 428 253 203 13 chr3 132674993 132675151 -85362007 - MIR SINE MIR -62 200 13 180 327 0 0 chr3 132675653 132675708 -85361450 - L2 LINE L2 -8 3264 3210 280 231 221 10 chr3 132675840 132675944 -85361214 - MIR SINE MIR -70 192 67 1534 164 4 12 chr3 132676185 132676435 -85360723 + AluJo SINE Alu 1 248 -64 660 235 20 7 chr3 132678439 132678592 -85358566 - MIR SINE MIR 0 262 108 213 276 35 0 chr3 132680742 132680800 -85356358 - MIR SINE MIR -130 78 19 515 337 56 5 chr3 132680820 132681016 -85356142 - L3 LINE CR1 -193 1384 1179 187 286 200 0 chr3 132681062 132681167 -85355991 - L2 LINE L2 -9 3263 3138 269 235 227 53 chr3 132681178 132681310 -85355848 - HAL1 LINE L1 -1935 572 418 190 229 0 124 chr3 132681542 132681647 -85355511 - L3 LINE CR1 -647 930 839 1488 128 0 34 chr3 132681689 132681923 -85355235 - AluJo SINE Alu -2 310 85 382 244 212 21 chr3 132682155 132682348 -85354810 - L1MC4a LINE L1 -1959 5849 5620 188 257 57 14 chr3 132682389 132682459 -85354699 - L3 LINE CR1 -770 807 735 228 235 44 15 chr3 132682939 132683007 -85354151 - MIR SINE MIR -76 132 63 216 280 93 0 chr3 132683912 132683987 -85353171 - L2 LINE L2 -40 3232 3151 1880 155 7 0 chr3 132684192 132684463 -85352695 + AluJo SINE Alu 11 283 -29 1214 127 0 0 chr3 132684463 132684621 -85352537 + AluSg/x SINE Alu 134 291 -21 24 32 0 0 chr3 132684639 132684670 -85352488 + AT_rich Low_complexity Low_complexity 1 31 0 189 307 80 0 chr3 132685300 132685375 -85351783 - MIR SINE MIR -93 169 89 241 243 68 10 chr3 132687031 132687134 -85350024 - L1ME4a LINE L1 -8 6113 6005 1550 160 0 0 chr3 132687155 132687439 -85349719 - AluJo SINE Alu 0 365 82 268 262 103 14 chr3 132688824 132688969 -85348189 - L1ME4a LINE L1 -1 6120 5963 1714 141 109 14 chr3 132689152 132689435 -85347723 - AluJo SINE Alu -2 310 1 2286 83 45 0 chr3 132689659 132689947 -85347211 + AluSg SINE Alu 1 301 -9 907 298 80 42 chr3 132689957 132690612 -85346546 - L1MC4a LINE L1 -771 5407 5254 316 371 55 11 chr3 132690637 132690717 -85346441 - L1MC4a LINE L1 -921 5225 5150 613 270 34 56 chr3 132690717 132690984 -85346174 - MIR SINE MIR 0 262 2 316 371 55 11 chr3 132690984 132691158 -85346000 - L1MC4a LINE L1 -996 5150 4956 1906 175 0 3 chr3 132691158 132691444 -85345714 - AluJo SINE Alu -27 285 1 316 371 55 11 chr3 132691444 132691460 -85345698 - L1MC4a LINE L1 -1190 4956 4942 609 276 16 35 chr3 132691498 132691752 -85345406 - L1ME4a LINE L1 -245 5876 5628 593 275 92 49 chr3 132693017 132693591 -85343567 - L2 LINE L2 -38 3275 2682 265 289 148 7 chr3 132694077 132694212 -85342946 - MER117 DNA MER1_type -40 157 4 21 36 0 0 chr3 132694947 132694975 -85342183 + AT_rich Low_complexity Low_complexity 1 28 0 2401 93 0 7 chr3 132696297 132696599 -85340559 + AluY SINE Alu 1 300 -11 2427 78 0 13 chr3 132697797 132698106 -85339052 + AluY SINE Alu 1 305 -6 497 249 133 23 chr3 132698307 132698480 -85338678 + MIR SINE MIR 39 230 -32 2025 127 32 86 chr3 132699910 132700004 -85337154 - MLT1B LTR MaLR 0 390 292 2198 104 30 3 chr3 132700004 132700301 -85336857 - AluSx SINE Alu -7 305 1 2025 127 32 86 chr3 132700301 132700615 -85336543 - MLT1B LTR MaLR -98 292 4 485 261 187 15 chr3 132701267 132701470 -85335688 + MIR SINE MIR 16 253 -9 1941 165 0 3 chr3 132701475 132701772 -85335386 + AluJb SINE Alu 1 296 -16 317 284 64 9 chr3 132701881 132701990 -85335168 - MIR SINE MIR -72 190 76 554 227 38 8 chr3 132702884 132703016 -85334142 - MIR SINE MIR -112 150 15 1187 102 0 7 chr3 132704919 132705142 -85332016 + (CCTG)n Simple_repeat Simple_repeat 1 224 -236 1071 94 0 0 chr3 132705142 132705322 -85331836 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1187 102 0 7 chr3 132705322 132705383 -85331775 + (CCTG)n Simple_repeat Simple_repeat 224 460 0 24 67 0 0 chr3 132705690 132705735 -85331423 + AT_rich Low_complexity Low_complexity 1 45 0 23 33 0 0 chr3 132708536 132708566 -85328592 + AT_rich Low_complexity Low_complexity 1 30 0 219 270 14 40 chr3 132710492 132710566 -85326592 + MER5A DNA MER1_type 70 141 -48 236 280 93 19 chr3 132710619 132710726 -85326432 - MIR SINE MIR -59 149 35 184 333 206 0 chr3 132711224 132711350 -85325808 + L2 LINE L2 3161 3312 -1 284 342 60 0 chr3 132711398 132711547 -85325611 - MIR SINE MIR -60 202 45 738 285 73 7 chr3 132711548 132711822 -85325336 - LTR16C LTR ERVL 0 491 200 640 283 20 60 chr3 132712644 132712895 -85324263 - Charlie8 DNA MER1_type -2174 243 3 211 296 28 0 chr3 132713278 132713349 -85323809 + L2 LINE L2 3184 3256 -16 667 336 31 8 chr3 132713862 132714118 -85323040 - MIR SINE MIR 0 262 1 1315 201 34 0 chr3 132715468 132715736 -85321422 + AluJo SINE Alu 36 312 0 355 179 75 0 chr3 132717993 132718060 -85319098 + Charlie5 DNA MER1_type 3 74 -2538 4475 158 30 44 chr3 132718083 132718870 -85318288 - L1MB4 LINE L1 0 6180 5404 2293 120 0 0 chr3 132718870 132719179 -85317979 - AluSx SINE Alu -3 309 1 4475 158 30 44 chr3 132719179 132719624 -85317534 - L1MB4 LINE L1 -776 5404 4954 386 120 0 27 chr3 132719624 132719699 -85317459 - L1MB4 LINE L1 -2 6178 6106 2348 94 0 0 chr3 132720088 132720386 -85316772 + AluSx SINE Alu 1 298 -14 1071 217 43 0 chr3 132720386 132720644 -85316514 - L1MB4 LINE L1 -1210 4936 4668 3850 196 76 32 chr3 132720672 132721852 -85315306 - L1MD2 LINE L1 -240 6119 4857 980 172 6 0 chr3 132721852 132722033 -85315125 + FAM SINE Alu 1 46 0 3850 196 76 32 chr3 132722033 132722335 -85314823 - L1MD2 LINE L1 -1502 4857 4570 253 207 268 0 chr3 132722491 132722573 -85314585 + L1MC4 LINE L1 7939 8042 0 267 31 0 0 chr3 132723174 132723206 -85313952 + (CA)n Simple_repeat Simple_repeat 2 33 0 390 333 16 0 chr3 132723259 132723382 -85313776 - L3 LINE CR1 -476 1101 977 294 29 0 0 chr3 132723599 132723634 -85313524 + (CA)n Simple_repeat Simple_repeat 1 35 0 243 200 0 0 chr3 132723679 132723739 -85313419 - L1ME LINE L1 -254 5867 5808 893 186 62 19 chr3 132723745 132723955 -85313203 - MER20 DNA MER1_type 0 219 1 298 290 32 70 chr3 132724103 132724155 -85313003 - L1ME LINE L1 -482 5639 5587 2403 87 0 0 chr3 132724155 132724453 -85312705 + AluSq SINE Alu 1 298 -15 298 290 32 70 chr3 132724453 132724586 -85312572 - L1ME LINE L1 -534 5587 5461 720 340 161 18 chr3 132724601 132724992 -85312166 - L3 LINE CR1 -756 821 375 288 296 111 0 chr3 132725098 132725233 -85311925 - HAL1 LINE L1 -2180 327 178 1052 169 12 0 chr3 132725272 132725444 -85311714 + FAM SINE Alu 1 174 -1 22 0 0 0 chr3 132725535 132725557 -85311601 + AT_rich Low_complexity Low_complexity 1 22 0 2227 79 52 0 chr3 132725560 132725851 -85311307 + AluSx SINE Alu 3 308 -4 258 32 0 0 chr3 132725868 132725899 -85311259 + (CA)n Simple_repeat Simple_repeat 2 32 0 1215 194 9 107 chr3 132725905 132726224 -85310934 + AluY SINE Alu 1 288 -23 390 188 39 8 chr3 132726235 132726363 -85310795 - MER69 DNA AcHobo -83 2443 2312 494 298 120 21 chr3 132726386 132726628 -85310530 + L2 LINE L2 3032 3297 -16 484 231 134 20 chr3 132726830 132727077 -85310081 + L1ME4a LINE L1 5836 6110 -11 2236 100 0 3 chr3 132727475 132727776 -85309382 - AluY SINE Alu -11 300 1 442 296 84 47 chr3 132728819 132729329 -85307829 + L1ME4a LINE L1 5394 5922 -199 398 19 0 19 chr3 132729586 132729638 -85307520 + (TTTTA)n Simple_repeat Simple_repeat 4 54 0 1757 157 3 17 chr3 132729640 132729934 -85307224 - AluJb SINE Alu -22 290 1 25 0 0 0 chr3 132730122 132730147 -85307011 + AT_rich Low_complexity Low_complexity 1 25 0 349 176 22 11 chr3 132730155 132730246 -85306912 + L1MB8 LINE L1 5091 5182 -964 2719 151 60 101 chr3 132730255 132730656 -85306502 + L1MB8 LINE L1 5446 5862 -316 2075 143 0 0 chr3 132730656 132730957 -85306201 - AluJb SINE Alu -11 301 1 2719 151 60 101 chr3 132730957 132731003 -85306155 + L1MB8 LINE L1 5862 5908 -270 4942 55 3 9 chr3 132731003 132731635 -85305523 + L1PA6 LINE L1 5524 6151 -3 2719 151 60 101 chr3 132731635 132731940 -85305218 + L1MB8 LINE L1 5908 6168 -10 548 244 96 68 chr3 132732081 132732331 -85304827 + MIR SINE MIR 1 257 -5 22 0 0 0 chr3 132734751 132734773 -85302385 + AT_rich Low_complexity Low_complexity 1 22 0 1826 229 35 14 chr3 132735158 132735670 -85301488 + L1MD3 LINE L1 7472 7994 -1 376 297 58 36 chr3 132735669 132736258 -85300900 - L1M4 LINE L1 -2615 3531 2930 * 973 99 17 22 chr3 132736302 132736483 -85300675 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 674 191 0 0 chr3 132736484 132736599 -85300559 - FLAM_C SINE Alu -28 115 1 22 0 0 0 chr3 132736648 132736670 -85300488 + AT_rich Low_complexity Low_complexity 1 22 0 182 313 12 84 chr3 132736717 132736800 -85300358 + L2 LINE L2 392 468 -2846 1728 116 104 15 chr3 132737225 132737333 -85299825 + AluSq SINE Alu 2 99 -210 2066 115 3 3 chr3 132737333 132737628 -85299530 + AluSc SINE Alu 1 295 -14 1728 116 104 15 chr3 132737628 132737804 -85299354 + AluSq SINE Alu 99 309 0 626 191 0 30 chr3 132737958 132738089 -85299069 - MLT2D LTR ERVL 0 414 288 530 123 25 0 chr3 132738089 132738170 -85298988 - MER1B DNA MER1_type 0 333 251 * 1231 130 85 0 chr3 132738166 132738366 -85298792 - MER1B DNA MER1_type -80 217 1 955 212 7 44 chr3 132738366 132738639 -85298519 - MLT2D LTR ERVL -128 286 24 2458 89 47 0 chr3 132738672 132739031 -85298127 - L1MA1 LINE L1 0 6302 5927 1293 165 106 33 chr3 132739033 132739306 -85297852 - AluJo SINE Alu -17 295 3 328 303 81 28 chr3 132739395 132739538 -85297620 + MIR SINE MIR 19 183 -79 1658 181 0 27 chr3 132739538 132739831 -85297327 - AluJo SINE Alu -24 288 4 328 303 81 28 chr3 132739831 132739910 -85297248 + MIR SINE MIR 183 256 -6 468 48 0 0 chr3 132740285 132740348 -85296810 + (TC)n Simple_repeat Simple_repeat 1 63 0 184 281 69 40 chr3 132741309 132741434 -85295724 + MIR SINE MIR 2 144 -64 999 257 66 40 chr3 132741849 132742304 -85294854 + L1MD1 LINE L1 4750 5216 -930 2786 151 60 50 chr3 132742398 132742470 -85294688 + L1MD1 LINE L1 5199 5269 -973 1748 164 85 3 chr3 132742470 132742788 -85294370 + MER2 DNA MER2_type 1 344 0 2786 151 60 50 chr3 132742788 132742849 -85294309 + L1MD1 LINE L1 5269 5328 -914 1992 115 3 62 chr3 132742849 132743170 -85293988 + AluSx SINE Alu 1 302 -10 2786 151 60 50 chr3 132743170 132743586 -85293572 + L1MD1 LINE L1 5328 5738 -504 1385 186 69 28 chr3 132743586 132743877 -85293281 + AluJo SINE Alu 1 303 -9 2786 151 60 50 chr3 132743877 132744003 -85293155 + L1MD1 LINE L1 5738 5885 -357 2143 80 40 0 chr3 132744003 132744278 -85292880 + AluSg SINE Alu 13 298 -12 2786 151 60 50 chr3 132744278 132744298 -85292860 + L1MD1 LINE L1 5885 5903 -339 1454 185 44 9 chr3 132744298 132744617 -85292541 + MLT1A2 LTR MaLR 34 363 -11 1746 152 55 9 chr3 132744624 132744953 -85292205 + L1MD1 LINE L1 5899 6242 0 1719 161 46 12 chr3 132744999 132745328 -85291830 - MER47A DNA MER2_type 0 366 27 296 224 207 0 chr3 132745351 132745467 -85291691 + L1MC4 LINE L1 7902 8041 -1 205 254 164 36 chr3 132746026 132746136 -85291022 + MIR SINE MIR 139 262 0 22 56 0 0 chr3 132746259 132746295 -85290863 + AT_rich Low_complexity Low_complexity 1 36 0 325 316 73 15 chr3 132746320 132746456 -85290702 + MIR SINE MIR 1 144 -118 2216 110 0 10 chr3 132746661 132746969 -85290189 + AluSg SINE Alu 1 305 -5 1968 150 0 7 chr3 132746995 132747288 -85289870 - AluJb SINE Alu -21 291 1 254 244 47 23 chr3 132747379 132747465 -85289693 + ERVL LTR ERVL 2049 2136 -3628 444 273 33 8 chr3 132747618 132747739 -85289419 + ERVL LTR ERVL 2331 2454 -3310 654 246 0 14 chr3 132747963 132748101 -85289057 + MER58A DNA MER1_type 1 136 0 308 303 27 57 chr3 132748188 132748321 -85288837 - L1MCa LINE L1 -874 1913 1778 201 74 0 0 chr3 132748321 132748348 -85288810 + (TG)n Simple_repeat Simple_repeat 2 28 0 308 303 27 57 chr3 132748348 132748426 -85288732 - L1MCa LINE L1 -1009 1778 1464 9149 196 59 69 chr3 132748943 132749968 -85287190 - L1MB7 LINE L1 -19 6663 5630 624 227 0 0 chr3 132749968 132750087 -85287071 + FLAM_A SINE Alu 4 122 -11 9149 196 59 69 chr3 132750087 132750119 -85287039 - L1MB7 LINE L1 -1052 5630 5599 2148 114 7 0 chr3 132750119 132750416 -85286742 - AluJb SINE Alu -13 299 1 9149 196 59 69 chr3 132750416 132751684 -85285474 - L1MB7 LINE L1 -1083 5599 4321 1907 162 55 0 chr3 132751684 132752012 -85285146 - MER7A DNA MER2_type -2 344 1 1899 148 17 7 chr3 132752015 132752306 -85284852 - AluJo SINE Alu -18 294 1 9149 196 59 69 chr3 132752306 132752464 -85284694 - L1MB7 LINE L1 -2363 4319 4161 846 164 0 0 chr3 132752464 132752592 -85284566 - FLAM_C SINE Alu -15 128 1 9149 196 59 69 chr3 132752592 132752897 -85284261 - L1MB7 LINE L1 -2521 4161 3855 1923 162 3 7 chr3 132752897 132753200 -85283958 - AluSx SINE Alu -10 302 1 9149 196 59 69 chr3 132753200 132754847 -85282311 - L1MB7 LINE L1 -2827 3855 2163 637 215 69 7 chr3 132755012 132755156 -85282002 - FRAM SINE Alu -23 153 1 338 282 43 34 chr3 132755159 132755276 -85281882 - L1MB7 LINE L1 -4544 2102 1985 2310 84 0 0 chr3 132755280 132755565 -85281593 - AluSg SINE Alu -14 296 12 757 252 12 49 chr3 132755577 132755864 -85281294 - L1MB7 LINE L1 -4644 2002 1693 305 133 133 0 chr3 132755840 132755900 -85281258 - L1PA13 LINE L1 -2 6659 6592 * 1399 221 82 6 chr3 132755897 132756415 -85280743 - L1MB7 LINE L1 -4832 1710 1215 352 290 161 19 chr3 132756736 132756898 -85280260 - L1ME3A LINE L1 -296 5874 5690 1124 98 0 0 chr3 132756958 132757101 -85280057 - AluSg/x SINE Alu -45 265 123 2127 143 3 0 chr3 132757108 132757401 -85279757 - AluSx SINE Alu -18 294 1 705 244 105 22 chr3 132757410 132757819 -85279339 - L1MEc LINE L1 -5039 1357 915 198 118 0 0 chr3 132757861 132757895 -85279263 + (A)n Simple_repeat Simple_repeat 1 34 0 774 252 69 11 chr3 132757919 132758193 -85278965 - L1MEc LINE L1 -5482 914 625 322 327 65 9 chr3 132758505 132758722 -85278436 - L1MEc LINE L1 -6122 274 46 1715 135 44 47 chr3 132758824 132759121 -85278037 - AluJb SINE Alu -2 310 15 858 209 161 56 chr3 132759134 132759468 -85277690 - L1ME3A LINE L1 -60 6110 5720 2132 125 3 13 chr3 132759468 132759781 -85277377 - AluSx SINE Alu -2 310 1 858 209 161 56 chr3 132759781 132759876 -85277282 - L1ME3A LINE L1 -450 5720 5636 1079 337 111 37 chr3 132759878 132760837 -85276321 + L2 LINE L2 2236 3272 0 288 0 0 0 chr3 132762431 132762463 -85274695 + (T)n Simple_repeat Simple_repeat 1 32 0 574 297 86 2 chr3 132762571 132762769 -85274389 + MIR SINE MIR 39 249 -13 * 763 210 17 77 chr3 132762766 132762999 -85274159 - MIR SINE MIR 0 262 44 351 236 234 9 chr3 132763050 132763177 -85273981 + MIR SINE MIR 2 147 -61 335 179 126 0 chr3 132763653 132763748 -85273410 - MER113 DNA MER1_type? -408 113 7 1913 115 45 0 chr3 132764784 132765089 -85272069 + AluSx SINE Alu 1 317 0 251 353 0 0 chr3 132765229 132765297 -85271861 + L2 LINE L2 3204 3271 -1 1155 196 157 4 chr3 132765488 132765743 -85271415 - AluJo SINE Alu -14 298 5 1972 157 7 0 chr3 132766183 132766476 -85270682 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr3 132766699 132766720 -85270438 + AT_rich Low_complexity Low_complexity 1 21 0 470 259 30 30 chr3 132766981 132767112 -85270046 + MER5A DNA MER1_type 59 189 0 952 298 82 11 chr3 132767306 132767869 -85269289 - L1ME4a LINE L1 -1 6120 5518 301 128 0 0 chr3 132767902 132767949 -85269209 + Alu SINE Alu 1 47 -252 1725 128 4 39 chr3 132768115 132768396 -85268762 - AluSp SINE Alu -42 271 1 642 220 33 60 chr3 132768396 132768578 -85268580 - L1M4b LINE L1 -5446 1413 1237 325 293 138 0 chr3 132768593 132768716 -85268442 + L3 LINE CR1 1063 1202 -375 1791 106 4 0 chr3 132768716 132768953 -85268205 - AluSg1 SINE Alu -14 295 58 1647 75 0 0 chr3 132769063 132769277 -85267881 - L1PA7 LINE L1 -2 6152 5939 310 299 127 19 chr3 132769472 132769629 -85267529 + L3 LINE CR1 1372 1545 -32 6693 124 16 20 chr3 132769785 132771127 -85266031 + L1MA3 LINE L1 4972 6302 -3 27 0 0 0 chr3 132771128 132771155 -85266003 + AT_rich Low_complexity Low_complexity 1 27 0 1849 145 17 7 chr3 132771878 132772168 -85264990 - AluJo SINE Alu -19 293 1 1117 205 42 5 chr3 132772424 132772639 -85264519 + MER58A DNA MER1_type 1 223 -1 2021 256 70 53 chr3 132773618 132774184 -85262974 + L1MC4 LINE L1 7012 7604 -438 2186 100 10 3 chr3 132774184 132774475 -85262683 + AluSx SINE Alu 1 293 -19 2021 256 70 53 chr3 132774475 132774920 -85262238 + L1MC4 LINE L1 7604 8040 -2 2423 98 0 0 chr3 132775185 132775491 -85261667 - AluSx SINE Alu -6 306 1 272 89 0 22 chr3 132775767 132775812 -85261346 + (TA)n Simple_repeat Simple_repeat 2 45 0 455 222 232 16 chr3 132775982 132776176 -85260982 - MER112 DNA MER1_type -6 254 19 239 235 0 0 chr3 132777022 132777073 -85260085 - MIR SINE MIR -14 248 198 850 153 15 0 chr3 132777079 132777216 -85259942 + FRAM SINE Alu 25 163 -13 21 0 0 0 chr3 132777705 132777726 -85259432 + AT_rich Low_complexity Low_complexity 1 21 0 933 229 137 6 chr3 132778981 132779331 -85257827 - L1ME4a LINE L1 0 6121 5726 2209 108 0 16 chr3 132779366 132779680 -85257478 - AluY SINE Alu -2 309 1 2117 116 0 7 chr3 132779682 132779974 -85257184 - AluSx SINE Alu -22 290 1 239 290 14 0 chr3 132780087 132780156 -85257002 + MIR SINE MIR 174 243 -19 322 324 68 113 chr3 132780248 132780331 -85256827 - L2 LINE L2 -2 3270 3185 2489 71 3 0 chr3 132780331 132780641 -85256517 + AluY SINE Alu 1 311 0 322 324 68 113 chr3 132780641 132780927 -85256231 - L2 LINE L2 -87 3185 2918 * 429 322 101 22 chr3 132780903 132781170 -85255988 - L2 LINE L2 -822 2492 2205 540 255 125 24 chr3 132781216 132781558 -85255600 + L1MC4 LINE L1 7574 8039 -3 241 252 90 58 chr3 132781608 132781763 -85255395 + L1MC5 LINE L1 5802 5961 -1847 228 163 0 0 chr3 132781889 132781932 -85255226 + (TG)n Simple_repeat Simple_repeat 2 44 0 219 114 0 0 chr3 132782091 132782126 -85255032 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 1491 164 0 0 chr3 132782382 132782661 -85254497 + L1PA7 LINE L1 5886 6164 0 227 204 93 0 chr3 132782985 132783039 -85254119 + L1MC5 LINE L1 6976 7034 -927 757 169 8 15 chr3 132783064 132783194 -85253964 + FLAM_C SINE Alu 1 129 -4 258 252 16 24 chr3 132783356 132783483 -85253675 + T-rich Low_complexity Low_complexity 5 130 0 2340 107 0 3 chr3 132783643 132783953 -85253205 - AluSg SINE Alu -1 309 1 387 283 78 52 chr3 132784064 132784255 -85252903 - MIR3 SINE MIR 0 208 13 1834 112 22 7 chr3 132785226 132785502 -85251656 + AluSx SINE Alu 5 284 -28 192 77 0 0 chr3 132785502 132785528 -85251630 + (TA)n Simple_repeat Simple_repeat 2 27 0 2581 213 141 33 chr3 132785543 132786274 -85250884 + MER21B LTR ERV1 43 852 -11 3453 208 42 41 chr3 132786289 132787271 -85249887 - L1M4 LINE L1 -1477 4669 3687 1417 172 115 18 chr3 132789353 132789632 -85247526 - AluJo SINE Alu -6 306 1 451 257 111 119 chr3 132791660 132791913 -85245245 - MIR SINE MIR -7 255 5 209 254 55 28 chr3 132792233 132792309 -85244849 + MIR SINE MIR 73 149 -63 * 247 330 11 11 chr3 132792302 132792393 -85244765 - MIR SINE MIR -152 110 20 21 0 0 0 chr3 132793073 132793094 -85244064 + AT_rich Low_complexity Low_complexity 1 21 0 1209 71 35 0 chr3 132793114 132793283 -85243875 - L1MA1 LINE L1 -362 5940 5766 369 0 0 0 chr3 132794000 132794041 -85243117 + (TG)n Simple_repeat Simple_repeat 2 42 0 2227 200 77 11 chr3 132794242 132794802 -85242356 + L1ME2 LINE L1 5469 6065 -99 2012 184 11 3 chr3 132794804 132795169 -85241989 + MER74A LTR ERVL 3 370 -188 2339 24 0 0 chr3 132795171 132795528 -85241630 + L1P1 LINE L1 5110 5466 -689 1663 53 5 0 chr3 132795537 132795746 -85241412 + L1PA3 LINE L1 5945 6154 -1 782 167 189 11 chr3 132795749 132795929 -85241229 + MER74A LTR ERVL 346 557 -1 800 165 8 8 chr3 132796191 132796324 -85240834 - FRAM SINE Alu -38 138 6 24 0 0 0 chr3 132796561 132796585 -85240573 + AT_rich Low_complexity Low_complexity 1 24 0 636 244 64 123 chr3 132796629 132797463 -85239695 - L1MC5 LINE L1 -284 7752 7019 287 336 68 20 chr3 132797810 132797956 -85239202 + L2 LINE L2 2698 2850 -464 1363 184 82 82 chr3 132798200 132798565 -85238593 - MLT1A1 LTR MaLR 0 365 1 302 276 236 0 chr3 132798565 132798692 -85238466 + L2 LINE L2 3115 3271 -1 24 0 0 0 chr3 132799080 132799104 -85238054 + GC_rich Low_complexity Low_complexity 1 24 0 666 137 92 13 chr3 132799340 132799493 -85237665 - Charlie5 DNA MER1_type 0 2624 2460 1392 232 17 6 chr3 132799548 132799897 -85237261 - L1MC4 LINE L1 -251 7791 7439 484 350 58 9 chr3 132799897 132800123 -85237035 + LTR16A LTR ERVL 1 237 -213 2066 101 10 42 chr3 132800190 132800498 -85236660 - AluSx SINE Alu -14 298 1 473 240 40 20 chr3 132800500 132800650 -85236508 - L1MEc LINE L1 -4345 2051 1899 676 262 49 67 chr3 132800707 132800836 -85236322 - L1MEc LINE L1 -4501 1895 1765 2185 79 0 0 chr3 132800836 132801113 -85236045 - AluY SINE Alu 0 311 35 676 262 49 67 chr3 132801113 132801241 -85235917 - L1MEc LINE L1 -4631 1765 1643 1689 185 3 31 chr3 132801241 132801560 -85235598 - AluJb SINE Alu -2 310 1 676 262 49 67 chr3 132801560 132801645 -85235513 - L1MEc LINE L1 -4753 1643 1558 522 299 129 4 chr3 132801762 132802003 -85235155 - L2 LINE L2 -4 3309 3039 * 616 233 82 65 chr3 132802002 132802234 -85234924 + L2 LINE L2 3077 3312 -1 2342 194 153 34 chr3 132802528 132802836 -85234322 - L1MC4a LINE L1 0 7808 7538 2567 65 0 0 chr3 132802836 132803142 -85234016 + AluY SINE Alu 1 306 -5 2342 194 153 34 chr3 132803142 132803540 -85233618 - L1MC4a LINE L1 -270 7538 7018 333 0 0 0 chr3 132803551 132803588 -85233570 + (CA)n Simple_repeat Simple_repeat 2 38 0 689 236 136 74 chr3 132803629 132804189 -85232969 + L1MC4 LINE L1 7199 7716 -92 * 2729 201 54 34 chr3 132804183 132804810 -85232348 + L1MDa LINE L1 1 640 -5900 3582 195 74 10 chr3 132804835 132806524 -85230634 + L1MDa LINE L1 1791 3588 -2952 1049 125 78 42 chr3 132806631 132806823 -85230335 + AluSq SINE Alu 99 297 -16 2439 78 0 0 chr3 132806989 132807284 -85229874 - AluSg SINE Alu -15 295 1 516 275 115 50 chr3 132807406 132807806 -85229352 - L1MC4a LINE L1 -1854 5954 5529 189 0 0 0 chr3 132807865 132807886 -85229272 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2096 121 4 0 chr3 132807888 132808169 -85228989 - AluSq SINE Alu -31 282 1 191 348 78 43 chr3 132808523 132808638 -85228520 - MIR SINE MIR -66 142 24 2326 55 0 52 chr3 132809981 132810290 -85226868 + AluY SINE Alu 1 293 -18 1706 187 7 7 chr3 132810365 132810664 -85226494 + AluJo SINE Alu 1 299 -13 21 71 0 0 chr3 132810961 132811003 -85226155 + AT_rich Low_complexity Low_complexity 1 42 0 347 280 16 64 chr3 132811781 132811906 -85225252 + MIR SINE MIR 45 163 -99 364 238 272 44 chr3 132811911 132812349 -85224809 + MLT1K LTR MaLR 18 586 -2 215 228 228 0 chr3 132812352 132812431 -85224727 + MIR SINE MIR 162 258 -4 1756 155 14 7 chr3 132812727 132813005 -85224153 + AluJb SINE Alu 10 289 -23 258 259 52 60 chr3 132813581 132813697 -85223461 + L2 LINE L2 2934 3048 -224 1724 301 102 18 chr3 132813818 132814674 -85222484 + L2 LINE L2 2181 3102 -211 1627 105 0 0 chr3 132815383 132815593 -85221565 + AluSg SINE Alu 1 210 -100 292 164 0 18 chr3 132815593 132815648 -85221510 + FLAM SINE Alu 78 131 -2 1737 157 18 11 chr3 132815911 132816192 -85220966 - AluJo SINE Alu -16 296 14 720 131 9 0 chr3 132816390 132816497 -85220661 - AluSg/x SINE Alu -13 297 190 29 28 0 0 chr3 132817521 132817557 -85219601 + AT_rich Low_complexity Low_complexity 1 36 0 612 274 119 0 chr3 132818046 132818265 -85218893 - MIR SINE MIR -14 248 4 685 311 98 52 chr3 132818436 132818877 -85218281 + L2 LINE L2 2835 3295 -18 210 139 0 0 chr3 132819215 132819251 -85217907 + (CA)n Simple_repeat Simple_repeat 2 37 0 593 291 86 12 chr3 132820138 132820465 -85216693 - L1ME4a LINE L1 -21 6100 5750 1429 165 8 4 chr3 132922189 132922425 -85114733 - AluJo SINE Alu -38 274 38 21 36 0 0 chr3 132922462 132922490 -85114668 + AT_rich Low_complexity Low_complexity 1 28 0 203 182 231 74 chr3 132922490 132922611 -85114547 - MIR SINE MIR -65 197 58 321 287 0 0 chr3 132923108 132923230 -85113928 - MER103 DNA DNA -43 123 2 368 353 104 0 chr3 132923982 132924131 -85113027 - MIR SINE MIR -63 145 17 677 183 53 15 chr3 132924214 132924345 -85112813 - AluJb SINE Alu -176 136 1 410 305 49 1 chr3 132924998 132925140 -85112018 - MIR SINE MIR -65 143 35 432 71 14 0 chr3 132925377 132925447 -85111711 - MADE1 DNA Mariner 0 80 10 261 130 0 0 chr3 132925451 132925497 -85111661 - MADE1 DNA Mariner 0 80 35 216 0 0 0 chr3 132925549 132925573 -85111585 + (CA)n Simple_repeat Simple_repeat 2 25 0 1932 75 0 16 chr3 132926586 132926864 -85110294 + AluY SINE Alu 36 309 0 240 326 122 50 chr3 132926964 132927060 -85110098 - MIR SINE MIR 0 262 174 893 171 80 6 chr3 132927060 132927236 -85109922 - MER5A DNA MER1_type 0 189 1 240 326 122 50 chr3 132927236 132927360 -85109798 - MIR SINE MIR -88 174 26 1900 106 8 0 chr3 132927362 132927616 -85109542 - AluSq SINE Alu -20 293 38 442 81 0 0 chr3 132927616 132927678 -85109480 + THE1A LTR MaLR 294 355 0 366 131 0 0 chr3 132927702 132927763 -85109395 - MSTB1 LTR MaLR 0 432 372 1289 165 12 16 chr3 132927863 132928105 -85109053 - AluSq SINE Alu -72 241 1 407 21 0 0 chr3 132928109 132928156 -85109002 - AluSq/x SINE Alu -180 133 87 2061 114 0 20 chr3 132928220 132928517 -85108641 - AluJb SINE Alu -14 298 8 2022 103 31 10 chr3 132928559 132928851 -85108307 - AluSq SINE Alu -15 298 1 1213 113 5 31 chr3 132928882 132929077 -85108081 - AluSg/x SINE Alu -18 292 103 492 18 0 0 chr3 132929460 132929517 -85107641 + (TA)n Simple_repeat Simple_repeat 1 57 0 1943 118 4 7 chr3 132929554 132929925 -85107233 - AluSc SINE Alu 0 370 1 2029 132 0 7 chr3 132929925 132930228 -85106930 - AluSx SINE Alu -11 301 1 944 59 0 0 chr3 132930260 132930379 -85106779 + SVA Other Other 213 331 -1055 1459 141 114 4 chr3 132930950 132931213 -85105945 + AluJo SINE Alu 1 292 -20 1836 93 128 0 chr3 132931226 132931483 -85105675 - AluSx SINE Alu -12 290 1 725 234 62 14 chr3 132931485 132931694 -85105464 - L1MB3 LINE L1 -130 6053 5835 990 122 0 43 chr3 132931710 132931874 -85105284 - AluSg/x SINE Alu -22 290 134 2253 89 0 0 chr3 132932064 132932357 -85104801 - AluY SINE Alu -18 293 1 1878 106 24 27 chr3 132932358 132932651 -85104507 - AluSx SINE Alu -20 292 1 915 214 28 23 chr3 132932805 132933020 -85104138 - MER20 DNA MER1_type -3 216 1 350 277 50 0 chr3 132933126 132933227 -85103931 + MIR SINE MIR 43 148 -114 831 195 0 0 chr3 132933440 132933594 -85103564 - AluJo SINE Alu -41 271 118 25 31 0 0 chr3 132933610 132933642 -85103516 + AT_rich Low_complexity Low_complexity 1 32 0 2192 110 0 0 chr3 132933647 132933948 -85103210 - AluSq SINE Alu -2 311 11 1188 57 0 0 chr3 132933951 132934092 -85103066 - AluSq/x SINE Alu -172 141 1 31 0 0 0 chr3 132934139 132934170 -85102988 + AT_rich Low_complexity Low_complexity 1 31 0 831 195 20 7 chr3 132934232 132934381 -85102777 - AluJb SINE Alu -28 284 134 1015 115 14 0 chr3 132934381 132934529 -85102629 - AluSp/q SINE Alu -8 305 156 1202 125 0 0 chr3 132934796 132934972 -85102186 - AluSx SINE Alu 0 310 135 2311 80 0 3 chr3 132934972 132935271 -85101887 - AluSx SINE Alu -14 298 1 21 0 0 0 chr3 132935273 132935294 -85101864 + AT_rich Low_complexity Low_complexity 1 21 0 875 145 0 0 chr3 132935425 132935556 -85101602 - AluSx SINE Alu -179 133 3 1788 151 20 0 chr3 132935557 132935725 -85101433 - AluJo SINE Alu -14 298 120 198 0 0 0 chr3 132935725 132935747 -85101411 + (TTA)n Simple_repeat Simple_repeat 2 23 0 1788 151 20 0 chr3 132935747 132935870 -85101288 - AluJo SINE Alu -192 120 1 1733 53 0 22 chr3 132935988 132936216 -85100942 + AluY SINE Alu 82 304 -7 2166 101 16 3 chr3 132936803 132937110 -85100048 - AluSx SINE Alu -1 311 1 1436 47 0 0 chr3 132937255 132937425 -85099733 - AluY SINE Alu -141 170 1 733 154 15 44 chr3 132937425 132937561 -85099597 - AluJo/FLAM SINE Alu -170 132 1 200 216 59 0 chr3 132938178 132938229 -85098929 + (CACCC)n Simple_repeat Simple_repeat 3 56 0 232 217 33 0 chr3 132939109 132939169 -85097989 - LTR16C LTR ERVL -7 484 423 438 323 56 50 chr3 132939303 132939606 -85097552 + L2 LINE L2 2882 3186 -86 2331 92 0 0 chr3 132939862 132940168 -85096990 + AluY SINE Alu 1 306 -5 29 28 0 0 chr3 132940288 132940324 -85096834 + AT_rich Low_complexity Low_complexity 1 36 0 1803 180 7 0 chr3 132940324 132940630 -85096528 + AluJb SINE Alu 1 308 -4 1235 182 0 22 chr3 132940724 132940949 -85096209 + AluJo SINE Alu 1 220 -92 1883 138 10 0 chr3 132941078 132941368 -85095790 + AluSp SINE Alu 19 311 -2 775 229 51 37 chr3 132941372 132941586 -85095572 + MER20 DNA MER1_type 2 218 -1 189 0 0 0 chr3 132941661 132941682 -85095476 + (A)n Simple_repeat Simple_repeat 1 21 0 2243 107 3 0 chr3 132942014 132942323 -85094835 - AluSg SINE Alu 0 310 1 2173 134 0 3 chr3 132942344 132942657 -85094501 - AluSx SINE Alu 0 312 1 2212 114 0 0 chr3 132943000 132943298 -85093860 - AluSx SINE Alu -14 298 1 2074 113 0 26 chr3 132943867 132944177 -85092981 + AluSx SINE Alu 1 302 -10 2208 92 26 0 chr3 132944218 132944548 -85092610 - AluSx SINE Alu 0 338 1 699 215 23 0 chr3 132944550 132944680 -85092478 - AluJo/FLAM SINE Alu -169 133 1 596 274 38 9 chr3 132945270 132945482 -85091676 - MLT1K LTR MaLR -295 293 76 985 128 20 0 chr3 132945863 132946011 -85091147 - AluSq/x SINE Alu -162 151 1 630 231 94 30 chr3 132946012 132946215 -85090943 - L1MA10 LINE L1 -56 6278 6063 2220 100 3 0 chr3 132947155 132947465 -85089693 - AluSx SINE Alu -1 311 1 22 35 0 0 chr3 132948314 132948343 -85088815 + GC_rich Low_complexity Low_complexity 1 29 0 252 346 28 0 chr3 132949013 132949120 -85088038 + MER3 DNA MER1_type 1 110 -99 1579 156 109 0 chr3 132949139 132949414 -85087744 - AluJo SINE Alu -7 305 1 360 300 83 22 chr3 132949458 132949488 -85087670 + L2 LINE L2 3123 3150 -163 2337 100 0 6 chr3 132949488 132949799 -85087359 - AluSx SINE Alu -3 309 1 360 300 83 22 chr3 132949799 132949948 -85087210 + L2 LINE L2 3150 3313 0 788 243 92 0 chr3 132950061 132950312 -85086846 - MER58 DNA MER1_type -67 274 1 27 29 0 0 chr3 132950318 132950352 -85086806 + AT_rich Low_complexity Low_complexity 1 34 0 2044 109 11 0 chr3 132950352 132950636 -85086522 - AluSx SINE Alu -25 287 1 243 241 17 0 chr3 132950682 132950740 -85086418 - FLAM_A SINE Alu -72 60 2 1618 110 27 104 chr3 132950743 132951071 -85086087 - AluYb8 SINE Alu -15 303 1 1137 105 0 47 chr3 132951497 132951668 -85085490 + AluSg/x SINE Alu 136 298 -12 856 226 0 0 chr3 132953643 132953802 -85083356 + FRAM SINE Alu 1 156 -20 2036 104 10 20 chr3 132953824 132954121 -85083037 + AluSc SINE Alu 1 294 -15 540 255 35 0 chr3 132954124 132954269 -85082889 - L1MB3 LINE L1 -20 6163 6014 335 237 43 21 chr3 132954276 132954369 -85082789 + L1MC4 LINE L1 6610 6704 -1338 1960 123 3 26 chr3 132954798 132955108 -85082050 - AluJb SINE Alu -9 303 1 261 192 39 0 chr3 132959872 132959924 -85077234 - MIR3 SINE MIR -38 170 117 30 45 0 0 chr3 132960124 132960168 -85076990 + GC_rich Low_complexity Low_complexity 1 44 0 189 0 0 0 chr3 132960279 132960300 -85076858 + (CGGGGG)n Simple_repeat Simple_repeat 2 22 0 690 117 19 0 chr3 132960541 132960644 -85076514 + AluSq/x SINE Alu 4 108 -204 949 148 43 0 chr3 132960746 132960908 -85076250 - AluJ SINE Alu 0 312 144 319 145 325 0 chr3 132960910 132960993 -85076165 - AluJ SINE Alu -191 111 2 351 0 0 0 chr3 132961284 132961323 -85075835 + (TG)n Simple_repeat Simple_repeat 2 40 0 25 0 0 0 chr3 132964485 132964510 -85072648 + GC_rich Low_complexity Low_complexity 1 25 0 432 248 60 8 chr3 132967466 132967583 -85069575 - MER20 DNA MER1_type -68 151 29 195 370 59 8 chr3 132967876 132967995 -85069163 - MIR3 SINE MIR -54 154 30 538 100 0 11 chr3 132969840 132969930 -85067228 + AluS SINE Alu 1 89 -224 369 0 0 0 chr3 132970175 132970216 -85066942 + (TG)n Simple_repeat Simple_repeat 2 42 0 1030 162 0 12 chr3 132970218 132970391 -85066767 - AluSg/x SINE Alu -31 279 109 1746 183 0 0 chr3 132972231 132972520 -85064638 - AluJo SINE Alu -14 298 10 2764 81 11 0 chr3 132972581 132972939 -85064219 - L1PA8 LINE L1 -13 6159 5798 186 260 201 19 chr3 132973567 132973721 -85063437 + MIR3 SINE MIR 9 190 -18 190 319 0 0 chr3 132973771 132973818 -85063340 - L2 LINE L2 -3 3310 3264 1515 194 3 25 chr3 132974577 132974896 -85062262 - AluJo SINE Alu 0 312 1 2209 106 6 0 chr3 132974912 132975223 -85061935 - AluSq SINE Alu 0 313 1 1916 124 28 3 chr3 132975330 132975612 -85061546 - AluJb SINE Alu -17 295 7 207 325 26 0 chr3 132976304 132976381 -85060777 - MIR3 SINE MIR -52 156 78 2366 47 0 27 chr3 132976389 132976690 -85060468 - AluY SINE Alu -18 293 1 2183 105 0 0 chr3 132976690 132976985 -85060173 - AluSg SINE Alu -15 295 1 1706 85 135 0 chr3 132977821 132978081 -85059077 + AluSp SINE Alu 1 295 -18 802 215 0 7 chr3 132978081 132978230 -85058928 - AluJb SINE Alu -34 278 131 1217 49 0 0 chr3 132978246 132978390 -85058768 + AluY SINE Alu 1 144 -167 2342 84 3 0 chr3 132978390 132978698 -85058460 + AluSx SINE Alu 1 309 -3 1087 194 14 5 chr3 132978737 132978948 -85058210 - AluJo SINE Alu -94 218 6 671 151 28 0 chr3 132978950 132979056 -85058102 - AluJo SINE Alu -174 138 30 253 280 11 75 chr3 132979183 132979276 -85057882 + L2 LINE L2 3226 3312 -1 189 161 0 0 chr3 132979513 132979544 -85057614 + MIR SINE MIR 221 251 -11 859 162 54 73 chr3 132979957 132980161 -85056997 - AluJb SINE Alu -21 291 92 203 152 0 0 chr3 132980302 132980335 -85056823 + L2 LINE L2 3271 3303 -10 189 326 23 0 chr3 132980316 132980411 -85056747 - MIR SINE MIR -71 137 83 * 202 187 0 80 chr3 132981095 132981170 -85055988 + G-rich Low_complexity Low_complexity 4 72 0 2018 115 13 0 chr3 132981452 132981757 -85055401 - AluSx SINE Alu -3 309 1 828 153 8 0 chr3 132981758 132981889 -85055269 - AluJo SINE Alu -176 136 5 626 262 98 6 chr3 132983694 132983858 -85053300 - AluJo SINE Alu -11 301 123 1773 115 84 25 chr3 132983871 132984157 -85053001 + AluSq SINE Alu 1 303 -10 818 207 73 69 chr3 132984694 132984969 -85052189 + LTR2 LTR ERV1 41 316 -133 25 31 0 0 chr3 132985069 132985101 -85052057 + GC_rich Low_complexity Low_complexity 1 32 0 2119 111 7 0 chr3 132985511 132985817 -85051341 - AluSx SINE Alu -4 308 1 341 289 0 21 chr3 132986510 132986607 -85050551 - MIR3 SINE MIR -52 156 62 1961 126 18 0 chr3 132986743 132987029 -85050129 + AluSx SINE Alu 1 291 -21 485 241 62 2 chr3 132987125 132987290 -85049868 - MIR SINE MIR -62 146 5 553 67 0 48 chr3 132988508 132988613 -85048545 + (TTCC)n Simple_repeat Simple_repeat 1 100 0 183 279 82 0 chr3 132988792 132988853 -85048305 - MIR3 SINE MIR -43 165 100 2142 106 0 31 chr3 132988940 132989262 -85047896 - AluSx SINE Alu 0 312 1 211 301 55 0 chr3 132989299 132989372 -85047786 + L2 LINE L2 3235 3311 -2 252 0 0 0 chr3 132989417 132989445 -85047713 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 240 282 128 0 chr3 132989482 132989560 -85047598 + MIR SINE MIR 36 123 -85 241 310 38 19 chr3 132989798 132989956 -85047202 + C-rich Low_complexity Low_complexity 1 161 0 217 296 11 45 chr3 132990434 132990522 -85046636 - MIR SINE MIR 0 262 178 414 0 0 0 chr3 132991045 132991091 -85046067 + (TG)n Simple_repeat Simple_repeat 2 47 0 202 189 0 0 chr3 132991146 132991183 -85045975 - L2 LINE L2 -19 3294 3258 870 153 0 0 chr3 132992229 132992353 -85044805 + FLAM_C SINE Alu 1 124 -9 2078 99 0 40 chr3 132992373 132992675 -85044483 + AluSx SINE Alu 1 290 -22 22 56 0 0 chr3 132993632 132993668 -85043490 + GC_rich Low_complexity Low_complexity 1 36 0 2407 53 0 10 chr3 132995366 132995670 -85041488 + AluY SINE Alu 1 301 -10 2266 115 0 0 chr3 132995920 132996225 -85040933 + AluSx SINE Alu 1 305 -7 26 0 0 0 chr3 132999401 132999427 -85037731 + GC_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr3 132999513 132999538 -85037620 + GC_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr3 132999785 132999808 -85037350 + GC_rich Low_complexity Low_complexity 1 23 0 246 147 0 53 chr3 132999842 132999917 -85037241 + (CCGGG)n Simple_repeat Simple_repeat 5 75 0 26 30 0 0 chr3 132999959 132999992 -85037166 + GC_rich Low_complexity Low_complexity 1 33 0 38 51 0 0 chr3 133000157 133000216 -85036942 + GC_rich Low_complexity Low_complexity 1 59 0 29 0 0 0 chr3 133002128 133002157 -85035001 + GC_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr3 133004383 133004408 -85032750 + AT_rich Low_complexity Low_complexity 1 25 0 2066 129 3 0 chr3 133004438 133004748 -85032410 + AluSx SINE Alu 1 311 -1 1353 91 0 67 chr3 133004883 133004946 -85032212 - AluSp SINE Alu -117 196 130 2080 98 17 3 chr3 133004946 133005242 -85031916 - AluY SINE Alu -11 300 1 1353 91 0 67 chr3 133005242 133005388 -85031770 - AluSp SINE Alu -183 130 1 2385 68 0 3 chr3 133005396 133005692 -85031466 - AluY SINE Alu -16 295 1 2388 88 3 0 chr3 133005699 133006006 -85031152 - AluSp SINE Alu -5 308 1 2442 65 0 0 chr3 133006501 133006808 -85030350 - AluY SINE Alu -4 307 1 1398 107 97 0 chr3 133006816 133007032 -85030126 - AluSx SINE Alu -20 292 56 874 192 0 0 chr3 133007691 133007837 -85029321 - FRAM SINE Alu -30 146 1 198 310 52 0 chr3 133007916 133007974 -85029184 - L2 LINE L2 0 3313 3253 25 65 0 0 chr3 133008332 133008378 -85028780 + GC_rich Low_complexity Low_complexity 1 46 0 1230 118 0 147 chr3 133010477 133010553 -85026605 + AluJo SINE Alu 81 167 -145 2572 41 0 13 chr3 133010553 133010867 -85026291 + AluY SINE Alu 1 310 -1 1230 118 0 147 chr3 133010867 133011062 -85026096 + AluJo SINE Alu 167 312 0 2006 109 0 45 chr3 133011180 133011491 -85025667 - AluSg SINE Alu -11 299 3 1901 128 0 73 chr3 133011505 133011834 -85025324 - AluY SINE Alu -6 305 1 2029 98 25 0 chr3 133013972 133014258 -85022900 + AluSx SINE Alu 1 293 -19 546 195 39 47 chr3 133014284 133014412 -85022746 + AluJb SINE Alu 153 279 -33 1473 164 94 0 chr3 133015557 133015574 -85021584 - AluJb SINE Alu -11 301 287 246 32 0 0 chr3 133015574 133015605 -85021553 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 1473 164 94 0 chr3 133015605 133015862 -85021296 - AluJb SINE Alu -25 287 1 399 263 115 6 chr3 133016169 133016325 -85020833 - MLT1B LTR MaLR -32 535 363 2199 114 0 0 chr3 133016441 133016739 -85020419 + AluSx SINE Alu 1 298 -14 656 265 167 15 chr3 133017003 133017339 -85019819 + L1MC3 LINE L1 7370 7756 -29 2056 120 20 0 chr3 133017346 133017647 -85019511 + AluSx SINE Alu 1 307 -5 1731 89 170 12 chr3 133018008 133018267 -85018891 - AluSg SINE Alu 0 300 1 686 0 0 0 chr3 133018686 133018759 -85018399 - tRNA-Phe-TTC tRNA tRNA -3 73 1 689 0 0 0 chr3 133018887 133018962 -85018196 + tRNA-Asn-AAC tRNA tRNA 1 75 -2 1325 246 42 57 chr3 133019762 133020137 -85017021 - Charlie4a DNA MER1_type -1464 497 131 1555 172 41 14 chr3 133020137 133020428 -85016730 - AluJb SINE Alu -13 299 1 1325 246 42 57 chr3 133020428 133020557 -85016601 - Charlie4a DNA MER1_type -1830 131 1 2264 81 7 0 chr3 133020563 133020859 -85016299 + AluSp SINE Alu 7 304 -9 2142 94 3 7 chr3 133020861 133021158 -85016000 + AluSp SINE Alu 1 296 -17 1510 159 53 58 chr3 133021572 133021825 -85015333 - MLT1B LTR MaLR -26 364 112 2223 105 0 0 chr3 133021825 133022120 -85015038 - AluSx SINE Alu -15 297 3 1510 159 53 58 chr3 133022120 133022225 -85014933 - MLT1B LTR MaLR -278 112 8 193 324 48 19 chr3 133022722 133022827 -85014331 - L2 LINE L2 -244 3028 2921 215 241 12 0 chr3 133024312 133024395 -85012763 + (CA)n Simple_repeat Simple_repeat 1 84 0 266 319 11 11 chr3 133024398 133024492 -85012666 + (CACG)n Simple_repeat Simple_repeat 4 97 0 459 274 0 0 chr3 133024495 133024670 -85012488 + (CA)n Simple_repeat Simple_repeat 1 175 0 2353 49 29 19 chr3 133025217 133025525 -85011633 - AluY SINE Alu 0 311 1 291 270 0 50 chr3 133025913 133026013 -85011145 + Charlie5 DNA MER1_type 2472 2566 -46 2337 85 13 3 chr3 133026803 133027108 -85010050 - AluSx SINE Alu -4 308 1 1685 128 4 23 chr3 133027302 133027568 -85009590 - AluJo SINE Alu -38 274 14 248 167 18 10 chr3 133028292 133028347 -85008811 + MIR SINE MIR 113 165 -43 2459 57 7 0 chr3 133028369 133028668 -85008490 - AluY SINE Alu -7 304 4 974 125 0 0 chr3 133028670 133028806 -85008352 - AluSq/x SINE Alu -177 136 1 835 166 29 17 chr3 133028829 133029004 -85008154 - L1MB5 LINE L1 0 6174 5998 379 286 43 7 chr3 133029460 133029600 -85007558 + MIR SINE MIR 22 166 -96 182 337 157 0 chr3 133029717 133029800 -85007358 + L2 LINE L2 3163 3258 -14 2105 117 3 31 chr3 133029843 133030160 -85006998 + AluSx SINE Alu 1 308 -4 269 351 70 18 chr3 133030545 133030716 -85006442 + MIR SINE MIR 5 184 -78 22 56 0 0 chr3 133031520 133031556 -85005602 + GC_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr3 133031656 133031678 -85005480 + GC_rich Low_complexity Low_complexity 1 22 0 24 91 0 0 chr3 133031765 133031831 -85005327 + GC_rich Low_complexity Low_complexity 1 66 0 191 61 30 0 chr3 133032113 133032146 -85005012 + (TG)n Simple_repeat Simple_repeat 2 35 0 451 249 50 6 chr3 133032195 133032520 -85004638 + (TG)n Simple_repeat Simple_repeat 1 339 0 2067 133 0 0 chr3 133034810 133035110 -85002048 + AluJb SINE Alu 1 300 -12 578 187 11 50 chr3 133035950 133036203 -85000955 + (CCCA)n Simple_repeat Simple_repeat 1 243 0 7694 53 3 7 chr3 133037723 133038765 -84998393 + SVA Other Other 434 1380 -6 2147 120 3 0 chr3 133038877 133039177 -84997981 - AluSx SINE Alu -7 305 5 259 270 95 48 chr3 133039239 133039365 -84997793 + MIR3 SINE MIR 15 146 -62 258 258 0 0 chr3 133040423 133040512 -84996646 + (CA)n Simple_repeat Simple_repeat 1 89 0 212 197 0 16 chr3 133040624 133040685 -84996473 + (CA)n Simple_repeat Simple_repeat 1 60 0 2188 77 28 0 chr3 133042402 133042687 -84994471 + AluY SINE Alu 1 293 -18 781 197 39 116 chr3 133042857 133043090 -84994068 - MER20 DNA MER1_type 0 219 5 233 250 18 0 chr3 133043202 133043258 -84993900 + MIR SINE MIR 117 173 -89 1952 122 39 0 chr3 133043290 133043576 -84993582 - AluSx SINE Alu -11 301 5 259 270 95 48 chr3 133043638 133043764 -84993394 + MIR3 SINE MIR 15 146 -62 188 348 56 0 chr3 133044038 133044127 -84993031 - MIR SINE MIR -89 173 80 301 240 108 23 chr3 133047136 133047265 -84989893 + L2 LINE L2 2632 2771 -543 203 269 218 45 chr3 133047309 133047465 -84989693 + L2 LINE L2 2912 3094 -178 311 315 18 9 chr3 133047545 133047656 -84989502 - MIR3 SINE MIR -13 195 84 28 71 0 0 chr3 133048218 133048274 -84988884 + GC_rich Low_complexity Low_complexity 1 56 0 254 164 30 45 chr3 133048728 133048795 -84988363 + (TCTCTG)n Simple_repeat Simple_repeat 1 66 0 255 204 37 0 chr3 133049044 133049098 -84988060 + MIR SINE MIR 94 149 -59 2530 36 10 7 chr3 133049381 133049690 -84987468 - AluY SINE Alu -1 310 1 1749 112 4 0 chr3 133049690 133049940 -84987218 - AluSg SINE Alu -12 298 48 265 318 84 13 chr3 133050109 133050263 -84986895 + MIR3 SINE MIR 3 167 -41 220 319 44 11 chr3 133050337 133050428 -84986730 - MIR3 SINE MIR -29 179 86 23 0 0 0 chr3 133051813 133051836 -84985322 + GC_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr3 133051977 133052014 -84985144 + GC_rich Low_complexity Low_complexity 1 37 0 283 237 237 0 chr3 133052584 133052677 -84984481 - L2 LINE L2 -3 3310 3196 207 0 0 0 chr3 133054670 133054693 -84982465 + (CCG)n Simple_repeat Simple_repeat 1 23 0 2126 132 0 0 chr3 133057278 133057582 -84979576 - AluSx SINE Alu -8 304 1 1725 148 0 40 chr3 133057591 133057926 -84979232 - AluJo SINE Alu 0 312 2 22 35 0 0 chr3 133060582 133060611 -84976547 + GC_rich Low_complexity Low_complexity 1 29 0 240 268 10 41 chr3 133061036 133061107 -84976051 - MIR SINE MIR -31 231 162 1001 76 0 15 chr3 133061107 133061238 -84975920 - FLAM_C SINE Alu -1 132 4 240 268 10 41 chr3 133061238 133061263 -84975895 - MIR SINE MIR -100 162 138 213 39 0 0 chr3 133061263 133061289 -84975869 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 256 38 208 0 chr3 133061292 133061345 -84975813 - MER41A LTR ERV1 -91 463 400 233 171 0 0 chr3 133061350 133061391 -84975767 - MIR SINE MIR -64 144 104 225 0 0 0 chr3 133061769 133061794 -84975364 + (CCTG)n Simple_repeat Simple_repeat 3 27 0 344 204 175 10 chr3 133061815 133061918 -84975240 - MIR SINE MIR -102 160 41 1974 110 0 60 chr3 133062186 133062504 -84974654 - AluY SINE Alu -8 303 5 276 100 0 0 chr3 133063295 133063335 -84973823 + (TCCC)n Simple_repeat Simple_repeat 3 42 0 290 319 18 0 chr3 133064269 133064382 -84972776 - L1MD2 LINE L1 0 6359 6245 183 129 0 0 chr3 133065742 133065773 -84971385 + (T)n Simple_repeat Simple_repeat 1 31 0 2281 106 0 3 chr3 133066109 133066420 -84970738 + AluSx SINE Alu 1 310 -2 263 328 69 26 chr3 133068658 133068774 -84968384 - MIR SINE MIR -77 185 65 2301 91 0 0 chr3 133069178 133069475 -84967683 - AluSg SINE Alu -13 297 1 1754 144 3 24 chr3 133071372 133071670 -84965488 + AluJo SINE Alu 1 292 -20 263 265 48 0 chr3 133072792 133072875 -84964283 - Tigger5 DNA MER2_type 0 2323 2237 233 204 19 0 chr3 133072875 133072929 -84964229 - Tigger5 DNA MER2_type -32 2291 2237 314 271 83 54 chr3 133073113 133073230 -84963928 - L1MC5 LINE L1 -32 7929 7817 2373 70 10 0 chr3 133073230 133073528 -84963630 - AluY SINE Alu -10 301 1 314 271 83 54 chr3 133073528 133073563 -84963595 - L1MC5 LINE L1 -144 7817 7784 768 249 58 0 chr3 133073563 133073768 -84963390 + MER20 DNA MER1_type 3 219 0 314 271 83 54 chr3 133073768 133073888 -84963270 - L1MC5 LINE L1 -177 7784 7584 289 154 18 9 chr3 133073888 133073955 -84963203 + Alu SINE Alu 1 55 -246 311 360 89 21 chr3 133074182 133074418 -84962740 - L1MC4 LINE L1 -180 7862 7611 315 161 0 0 chr3 133077552 133077608 -84959550 + T-rich Low_complexity Low_complexity 1 56 0 216 0 0 0 chr3 133079096 133079120 -84958038 + (CCCCCT)n Simple_repeat Simple_repeat 5 28 0 201 140 53 35 chr3 133080946 133081003 -84956155 + (CTGGGG)n Simple_repeat Simple_repeat 3 60 0 2419 63 0 3 chr3 133085465 133085766 -84951392 - AluY SINE Alu -11 300 1 2377 70 0 16 chr3 133085858 133086172 -84950986 - AluY SINE Alu 0 311 3 1657 107 4 0 chr3 133086176 133086410 -84950748 - AluSq SINE Alu -14 299 65 23 0 0 0 chr3 133089575 133089598 -84947560 + GC_rich Low_complexity Low_complexity 1 23 0 439 135 151 4 chr3 133090675 133090781 -84946377 - MLT1D LTR MaLR -375 130 8 2584 49 0 0 chr3 133090811 133091118 -84946040 + AluSp SINE Alu 1 307 -6 400 321 16 80 chr3 133191514 133191825 -84845333 + L2 LINE L2 2972 3262 -10 24 32 0 0 chr3 133193249 133193280 -84843878 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr3 133193379 133193401 -84843757 + AT_rich Low_complexity Low_complexity 1 22 0 1065 206 0 0 chr3 133193456 133193636 -84843522 + AluJb SINE Alu 50 229 -83 434 241 51 70 chr3 133193650 133193808 -84843350 + L1ME4a LINE L1 5966 6120 -1 2223 117 0 43 chr3 133193815 133194102 -84843056 + AluSx SINE Alu 1 274 -38 441 0 0 0 chr3 133194102 133194151 -84843007 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 2223 117 0 43 chr3 133194151 133194189 -84842969 + AluSx SINE Alu 274 312 0 23 0 0 0 chr3 133194314 133194337 -84842821 + AT_rich Low_complexity Low_complexity 1 23 0 2205 115 10 0 chr3 133194339 133194634 -84842524 - AluSx SINE Alu -14 298 1 259 316 15 21 chr3 133194948 133195122 -84842036 + MLT1L LTR MaLR 1 174 -337 25 0 0 0 chr3 133196171 133196196 -84840962 + GC_rich Low_complexity Low_complexity 1 25 0 314 230 38 25 chr3 133196943 133197064 -84840094 - MIR SINE MIR -9 199 68 202 263 25 38 chr3 133197624 133197704 -84839454 - L2 LINE L2 -4 3268 3190 2258 107 17 0 chr3 133198046 133198346 -84838812 + AluSx SINE Alu 1 305 -7 2311 107 0 3 chr3 133198346 133198644 -84838514 + AluSc SINE Alu 1 297 -12 228 35 0 0 chr3 133198645 133198674 -84838484 + (TA)n Simple_repeat Simple_repeat 1 29 0 22 35 0 0 chr3 133198884 133198913 -84838245 + AT_rich Low_complexity Low_complexity 1 29 0 2417 82 0 0 chr3 133199006 133199298 -84837860 + AluSg SINE Alu 1 292 -18 493 247 54 111 chr3 133199303 133199593 -84837565 - L1ME4a LINE L1 -174 5947 5681 680 194 0 8 chr3 133199593 133199722 -84837436 + FLAM_A SINE Alu 1 128 -5 493 247 54 111 chr3 133199722 133199799 -84837359 - L1ME4a LINE L1 -440 5681 5601 318 331 128 7 chr3 133200449 133200597 -84836561 + L2 LINE L2 3102 3267 -5 196 335 127 52 chr3 133200715 133200839 -84836319 - L2 LINE L2 -529 2785 2672 1661 153 3 42 chr3 133200839 133201127 -84836031 + AluJo SINE Alu 22 298 -14 196 335 127 52 chr3 133201127 133201214 -84835944 - L2 LINE L2 -642 2672 2558 604 191 0 0 chr3 133201401 133201506 -84835652 + AluJo/FLAM SINE Alu 7 111 -201 1996 147 0 0 chr3 133201508 133201847 -84835311 - AluSx SINE Alu 0 339 1 201 39 0 0 chr3 133201995 133202021 -84835137 + (TTAGGG)n Simple_repeat Simple_repeat 6 31 0 310 250 74 37 chr3 133202074 133202182 -84834976 + MER5B DNA MER1_type 7 118 -60 328 206 48 87 chr3 133202570 133202696 -84834462 - MIR SINE MIR -67 141 21 193 232 98 27 chr3 133203689 133203801 -84833357 + L2 LINE L2 3112 3231 -82 1995 139 16 7 chr3 133204023 133204332 -84832826 + AluJo SINE Alu 1 312 0 242 234 47 0 chr3 133204870 133204934 -84832224 + MER5B DNA MER1_type 112 178 0 888 154 35 0 chr3 133205391 133205534 -84831624 - FAM SINE Alu -10 175 28 210 196 137 0 chr3 133205643 133205694 -84831464 + L2 LINE L2 3256 3313 0 518 247 143 69 chr3 133207721 133207952 -84829206 - MIR SINE MIR -3 259 12 439 324 14 7 chr3 133207955 133208094 -84829064 - MER5A DNA MER1_type 0 189 50 196 200 200 15 chr3 133208552 133208617 -84828541 + MIR3 SINE MIR 98 174 -34 198 200 100 0 chr3 133208970 133209020 -84828138 - L2 LINE L2 -50 3222 3168 636 200 48 21 chr3 133209048 133209193 -84827965 - MIR SINE MIR -32 230 82 2153 122 0 22 chr3 133210219 133210577 -84826581 + AluSx SINE Alu 1 351 0 216 179 89 36 chr3 133210577 133210633 -84826525 + L2 LINE L2 3193 3251 -62 416 263 58 19 chr3 133210658 133210814 -84826344 + MIR SINE MIR 89 250 -12 381 351 29 19 chr3 133214264 133214469 -84822689 + MIR SINE MIR 4 210 -52 504 257 166 17 chr3 133215442 133215617 -84821541 + MIR SINE MIR 41 241 -21 1810 175 97 21 chr3 133215692 133216126 -84821032 + MLT1C LTR MaLR 1 467 0 182 147 0 0 chr3 133217065 133217099 -84820059 - L2 LINE L2 -220 3052 3019 2111 176 19 3 chr3 133217704 133218080 -84819078 - MLT2B1 LTR ERVL 0 520 139 2370 121 65 35 chr3 133218083 133218513 -84818645 + MSTB2 LTR MaLR 15 457 0 854 150 7 0 chr3 133218513 133218653 -84818505 - MLT2B1 LTR ERVL -377 143 3 583 252 36 0 chr3 133219010 133219149 -84818009 - MIR3 SINE MIR -3 205 62 988 227 78 26 chr3 133219741 133220049 -84817109 - MLT1B LTR MaLR -2 388 65 355 305 57 17 chr3 133220831 133221008 -84816150 - L1MC5 LINE L1 -67 7894 7711 421 214 39 10 chr3 133221851 133221954 -84815204 + MIR SINE MIR 31 136 -126 2232 116 0 3 chr3 133221992 133222285 -84814873 + AluSx SINE Alu 1 292 -20 277 231 169 54 chr3 133222432 133222562 -84814596 - MIR SINE MIR -51 211 67 318 217 84 0 chr3 133223091 133223174 -84813984 + L3b LINE CR1 1277 1366 -217 1998 145 0 14 chr3 133225906 133226202 -84810956 + AluJo SINE Alu 5 296 -16 197 164 0 36 chr3 133226483 133226538 -84810620 + GA-rich Low_complexity Low_complexity 2 54 0 562 213 128 18 chr3 133227112 133227276 -84809882 - MER5A DNA MER1_type -7 182 1 184 200 15 123 chr3 133227549 133227614 -84809544 + L2 LINE L2 3206 3263 -9 2217 116 7 0 chr3 133227853 133228155 -84809003 - AluSx SINE Alu -8 304 1 2319 92 0 0 chr3 133228181 133228474 -84808684 - AluSg SINE Alu -17 293 1 183 42 0 0 chr3 133228487 133228511 -84808647 + (A)n Simple_repeat Simple_repeat 1 24 0 1581 153 9 37 chr3 133228863 133229071 -84808087 - L1MB5 LINE L1 -97 6077 5880 1735 165 0 48 chr3 133229071 133229380 -84807778 - AluJo SINE Alu -17 295 2 1581 153 9 37 chr3 133229380 133229492 -84807666 - L1MB5 LINE L1 -294 5880 5766 3085 157 36 9 chr3 133230365 133230476 -84806682 - MER74A LTR ERVL 0 558 451 180 0 0 0 chr3 133230476 133230496 -84806662 + (CATGC)n Simple_repeat Simple_repeat 1 20 0 3085 157 36 9 chr3 133230496 133230914 -84806244 - MER74A LTR ERVL -107 451 15 1965 146 0 0 chr3 133230916 133231255 -84805903 + AluSx SINE Alu 2 340 0 207 273 189 38 chr3 133233299 133233431 -84803727 - MIR SINE MIR -79 183 32 1887 171 10 13 chr3 133233447 133233752 -84803406 - AluJb SINE Alu -8 304 1 21 36 0 0 chr3 133233904 133233932 -84803226 + AT_rich Low_complexity Low_complexity 1 28 0 2581 53 0 10 chr3 133233979 133234281 -84802877 - AluY SINE Alu -12 299 1 997 277 68 54 chr3 133235694 133235863 -84801295 - L1ME4a LINE L1 -67 6054 5889 2295 68 21 0 chr3 133235863 133236185 -84800973 - AluSq SINE Alu 0 328 1 997 277 68 54 chr3 133236185 133236530 -84800628 - L1ME4a LINE L1 -232 5889 5532 285 330 10 0 chr3 133236581 133236681 -84800477 - MIR SINE MIR -71 137 37 518 155 0 10 chr3 133237229 133237332 -84799826 + L1MB1 LINE L1 6067 6168 0 900 231 13 8 chr3 133237463 133237701 -84799457 - MER3 DNA MER1_type 0 2578 2340 230 200 22 0 chr3 133237684 133237729 -84799429 - MER3 DNA MER1_type -163 46 1 * 1860 161 7 3 chr3 133239211 133239496 -84797662 - AluJo SINE Alu -26 286 1 237 33 0 0 chr3 133240000 133240030 -84797128 + (TC)n Simple_repeat Simple_repeat 1 30 0 333 0 0 0 chr3 133240030 133240067 -84797091 + (CCTG)n Simple_repeat Simple_repeat 1 37 0 657 201 6 17 chr3 133240067 133240246 -84796912 + CT-rich Low_complexity Low_complexity 2 178 0 697 164 0 48 chr3 133240274 133240463 -84796695 + CT-rich Low_complexity Low_complexity 1 180 0 563 208 23 17 chr3 133240492 133240816 -84796342 + CT-rich Low_complexity Low_complexity 1 325 0 214 290 0 14 chr3 133241085 133241154 -84796004 + G-rich Low_complexity Low_complexity 1 68 0 252 276 35 11 chr3 133241723 133241810 -84795348 + GA-rich Low_complexity Low_complexity 3 91 0 540 224 12 6 chr3 133241814 133241975 -84795183 + CT-rich Low_complexity Low_complexity 1 162 0 1858 149 9 38 chr3 133241975 133242291 -84794867 - AluJo SINE Alu -5 307 1 207 342 142 0 chr3 133242306 133242426 -84794732 - L2 LINE L2 -8 3305 3169 1986 112 49 25 chr3 133243743 133244029 -84793129 - AluSx SINE Alu -19 293 1 1630 196 0 17 chr3 133244278 133244614 -84792544 - AluJo SINE Alu 0 331 1 291 266 81 24 chr3 133244614 133244738 -84792420 - MIR SINE MIR -57 151 21 309 221 0 0 chr3 133245123 133245227 -84791931 + GA-rich Low_complexity Low_complexity 1 104 0 225 308 96 32 chr3 133245247 133245403 -84791755 + MIR3 SINE MIR 33 198 -10 207 71 0 0 chr3 133246103 133246131 -84791027 - MER91 DNA MER1_type -77 63 36 236 273 0 34 chr3 133248818 133248906 -84788252 + CT-rich Low_complexity Low_complexity 2 86 0 252 315 178 39 chr3 133249153 133249772 -84787386 + L2 LINE L2 2029 2733 -581 * 357 322 42 98 chr3 133249743 133250172 -84786986 + L2 LINE L2 2865 3269 -3 475 236 16 39 chr3 133251270 133251397 -84785761 + MER94 DNA DNA 1 124 -10 384 269 67 0 chr3 133251862 133251981 -84785177 + MIR SINE MIR 63 189 -73 600 148 35 9 chr3 133252129 133252244 -84784914 - MIR SINE MIR -108 154 37 243 88 0 0 chr3 133252565 133252599 -84784559 + (TG)n Simple_repeat Simple_repeat 2 35 0 201 291 162 39 chr3 133253545 133253724 -84783434 - L3b LINE CR1 -196 1387 1187 298 268 21 0 chr3 133253888 133253985 -84783173 + (TG)n Simple_repeat Simple_repeat 1 99 0 265 214 19 0 chr3 133253999 133254102 -84783056 + (TG)n Simple_repeat Simple_repeat 1 105 0 3360 174 34 4 chr3 133254945 133255622 -84781536 - L1MB4 LINE L1 0 6180 5484 1134 215 68 30 chr3 133255729 133256097 -84781061 - L2 LINE L2 -342 2972 2591 779 198 108 0 chr3 133256192 133256349 -84780809 - MER45A DNA AcHobo -4 174 1 269 196 39 0 chr3 133256394 133256445 -84780713 + MER96 DNA MER1_type? 47 99 -76 638 262 25 20 chr3 133256767 133256969 -84780189 - MIR SINE MIR -44 218 16 324 250 160 0 chr3 133257110 133257210 -84779948 - MIR SINE MIR -40 222 107 244 262 41 57 chr3 133257872 133257994 -84779164 + MIR SINE MIR 31 150 -112 182 281 211 0 chr3 133259535 133259649 -84777509 + MIR3 SINE MIR 10 147 -61 186 103 0 0 chr3 133259891 133259920 -84777238 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 1682 87 0 14 chr3 133259926 133260144 -84777014 - AluSg/x SINE Alu -5 305 91 376 293 48 94 chr3 133260253 133260772 -84776386 - L2 LINE L2 -72 3200 2673 2240 222 22 15 chr3 133263308 133263897 -84773261 + L1ME4a LINE L1 3776 4368 -1778 333 250 0 0 chr3 133263908 133263968 -84773190 - MER2 DNA MER2_type -1 344 285 420 185 0 0 chr3 133263990 133264055 -84773103 + MER2 DNA MER2_type 281 345 0 514 186 0 39 chr3 133264055 133264157 -84773001 - MER2 DNA MER2_type -247 98 1 2231 204 36 48 chr3 133264159 133264969 -84772189 + L1ME4a LINE L1 4381 5243 -903 323 200 136 8 chr3 133265064 133265189 -84771969 + L1ME2 LINE L1 4906 5046 -1100 * 1531 191 223 74 chr3 133265170 133265819 -84771339 + L1ME2 LINE L1 5419 6164 0 360 0 0 0 chr3 133266726 133266766 -84770392 + (TG)n Simple_repeat Simple_repeat 2 41 0 1697 145 61 44 chr3 133266893 133267190 -84769968 + AluJo SINE Alu 1 302 -10 687 167 42 7 chr3 133267805 133267902 -84769256 - MER53 DNA DNA -18 171 66 288 0 0 0 chr3 133267902 133267934 -84769224 + (TA)n Simple_repeat Simple_repeat 2 33 0 687 167 42 7 chr3 133267934 133267980 -84769178 - MER53 DNA DNA -123 66 23 345 327 47 43 chr3 133269401 133269612 -84767546 - MIR SINE MIR -50 212 1 1625 172 34 18 chr3 133269890 133270216 -84766942 - L1MB7 LINE L1 -16 6168 5838 1921 121 72 3 chr3 133270220 133270552 -84766606 - MER46B DNA MER2_type 0 236 7 1947 175 42 12 chr3 133270558 133270959 -84766199 - L1MB7 LINE L1 -347 5837 5425 1163 279 125 53 chr3 133271411 133271432 -84765726 + L1ME4a LINE L1 5282 5300 -821 2350 110 0 3 chr3 133271432 133271733 -84765425 + AluSg SINE Alu 1 300 -10 1163 279 125 53 chr3 133271733 133272199 -84764959 + L1ME4a LINE L1 5300 5846 -275 1989 157 3 3 chr3 133272199 133272498 -84764660 + AluJb SINE Alu 3 301 -11 1163 279 125 53 chr3 133272498 133272777 -84764381 + L1ME4a LINE L1 5846 6104 -17 2255 88 3 73 chr3 133273499 133273828 -84763330 - AluSx SINE Alu -6 306 1 848 183 159 38 chr3 133274515 133274804 -84762354 + MER33 DNA MER1_type 1 324 0 428 305 48 12 chr3 133275300 133275467 -84761691 + MIR3 SINE MIR 24 196 -12 2165 107 7 3 chr3 133276885 133277174 -84759984 + AluSx SINE Alu 1 290 -22 1055 182 0 0 chr3 133277174 133277339 -84759819 + AluSg/x SINE Alu 134 298 -14 355 281 11 0 chr3 133277355 133277444 -84759714 + L2 LINE L2 3224 3313 0 964 241 103 32 chr3 133277584 133277954 -84759204 + MSTD LTR MaLR 1 396 0 264 292 24 65 chr3 133278254 133278422 -84758736 + MIR3 SINE MIR 41 201 -7 28 0 0 0 chr3 133278847 133278875 -84758283 + AT_rich Low_complexity Low_complexity 1 28 0 583 264 117 59 chr3 133278878 133279312 -84757846 + MLT1J LTR MaLR 1 446 0 216 271 29 14 chr3 133279359 133279429 -84757729 + C-rich Low_complexity Low_complexity 2 72 0 285 275 46 28 chr3 133279797 133279906 -84757252 + MIR SINE MIR 81 191 -71 220 280 20 0 chr3 133281688 133281738 -84755420 + L2 LINE L2 3208 3258 -14 187 289 19 77 chr3 133282358 133282462 -84754696 + MIR SINE MIR 16 113 -95 871 282 33 12 chr3 133282976 133283221 -84753937 - MIR SINE MIR -11 251 2 1059 187 0 35 chr3 133284746 133284944 -84752214 + AluJb SINE Alu 107 297 -15 2186 127 0 13 chr3 133284976 133285292 -84751866 + AluSx SINE Alu 1 312 0 1476 255 39 59 chr3 133285522 133286016 -84751142 - LTR16C LTR ERVL -7 484 1 562 236 20 72 chr3 133286018 133286213 -84750945 + MIR SINE MIR 77 261 -1 303 228 173 8 chr3 133286773 133286900 -84750258 - MER103 DNA DNA -9 157 10 2687 180 82 60 chr3 133286919 133287290 -84749868 + MER44D DNA MER2_type 2 363 -2124 1944 171 0 22 chr3 133287290 133287605 -84749553 - AluJb SINE Alu -4 308 1 2687 180 82 60 chr3 133287605 133287630 -84749528 + MER44D DNA MER2_type 363 386 -2101 2389 63 21 0 chr3 133287630 133287915 -84749243 - AluY SINE Alu -20 291 1 2687 180 82 60 chr3 133287915 133288233 -84748925 + MER44D DNA MER2_type 386 605 0 248 320 13 0 chr3 133288319 133288397 -84748761 + L2 LINE L2 3194 3272 0 * 289 303 99 40 chr3 133288378 133288530 -84748628 + L3b LINE CR1 1201 1361 -222 222 212 45 76 chr3 133288687 133288753 -84748405 - L2 LINE L2 -2 3270 3207 353 218 35 153 chr3 133289683 133289885 -84747273 - MER5B DNA MER1_type 0 178 1 841 305 140 46 chr3 133289902 133290515 -84746643 - L3 LINE CR1 -50 1527 857 231 306 8 25 chr3 133292956 133293077 -84744081 + GA-rich Low_complexity Low_complexity 2 120 0 210 282 129 37 chr3 133294581 133294744 -84742414 - MIR3 SINE MIR -12 196 19 21 0 0 0 chr3 133296495 133296516 -84740642 + GC_rich Low_complexity Low_complexity 1 21 0 188 0 0 69 chr3 133296671 133296700 -84740458 + (CCG)n Simple_repeat Simple_repeat 2 28 0 233 215 15 15 chr3 133296718 133296783 -84740375 + (CCG)n Simple_repeat Simple_repeat 3 67 0 21 36 0 0 chr3 133297020 133297048 -84740110 + GC_rich Low_complexity Low_complexity 1 28 0 210 234 0 0 chr3 133297680 133297727 -84739431 + G-rich Low_complexity Low_complexity 2 48 0 233 275 0 67 chr3 133298274 133298452 -84738706 + C-rich Low_complexity Low_complexity 6 171 0 314 230 38 25 chr3 133299134 133299255 -84737903 - MIR SINE MIR -9 199 68 202 263 25 38 chr3 133299815 133299895 -84737263 - L2 LINE L2 -4 3268 3190 2258 107 17 0 chr3 133300237 133300537 -84736621 + AluSx SINE Alu 1 305 -7 2346 108 0 0 chr3 133300537 133300834 -84736324 + AluSc SINE Alu 1 297 -12 228 35 0 0 chr3 133300835 133300864 -84736294 + (TA)n Simple_repeat Simple_repeat 2 30 0 22 35 0 0 chr3 133301074 133301103 -84736055 + AT_rich Low_complexity Low_complexity 1 29 0 2417 82 0 0 chr3 133301196 133301488 -84735670 + AluSg SINE Alu 1 292 -18 493 247 54 111 chr3 133301493 133301783 -84735375 - L1ME4a LINE L1 -174 5947 5681 680 194 0 8 chr3 133301783 133301912 -84735246 + FLAM_A SINE Alu 1 128 -5 493 247 54 111 chr3 133301912 133301989 -84735169 - L1ME4a LINE L1 -440 5681 5601 318 331 128 7 chr3 133302639 133302787 -84734371 + L2 LINE L2 3102 3267 -5 196 335 127 52 chr3 133302905 133303029 -84734129 - L2 LINE L2 -529 2785 2672 1661 153 3 42 chr3 133303029 133303317 -84733841 + AluJo SINE Alu 22 298 -14 196 335 127 52 chr3 133303317 133303404 -84733754 - L2 LINE L2 -642 2672 2558 1740 173 7 33 chr3 133303591 133303897 -84733261 + AluJo SINE Alu 7 304 -8 936 229 18 14 chr3 133304319 133304463 -84732695 + L1MB7 LINE L1 5951 6098 -86 2343 114 57 26 chr3 133304463 133304655 -84732503 + Tigger2a DNA MER2_type 1 186 -2522 2063 142 20 0 chr3 133304655 133304951 -84732207 - AluSx SINE Alu -10 302 1 2343 114 57 26 chr3 133304951 133305179 -84731979 + Tigger2a DNA MER2_type 186 434 0 936 229 18 14 chr3 133305179 133305257 -84731901 + L1MB7 LINE L1 6098 6174 -10 2349 81 3 0 chr3 133305338 133305645 -84731513 - AluSp SINE Alu 0 308 1 1973 154 0 7 chr3 133307114 133307413 -84729745 + AluSx SINE Alu 1 297 -15 1000 171 0 13 chr3 133307413 133307571 -84729587 + AluJb SINE Alu 134 289 -23 366 80 0 0 chr3 133307571 133307621 -84729537 + (GGAA)n Simple_repeat Simple_repeat 1 50 0 893 181 116 58 chr3 133307714 133307991 -84729167 + L1MB8 LINE L1 5886 6178 0 212 310 35 0 chr3 133308995 133309082 -84728076 - MIR SINE MIR -64 144 55 732 201 180 0 chr3 133309423 133309612 -84727546 + MER58A DNA MER1_type 2 224 0 3636 201 36 59 chr3 133309612 133309649 -84727509 + L1ME1 LINE L1 4965 5001 -1165 2232 118 0 0 chr3 133309649 133309938 -84727220 + AluSx SINE Alu 1 289 -23 2255 94 0 39 chr3 133309942 133310250 -84726908 + AluY SINE Alu 3 298 -13 1735 164 34 14 chr3 133310259 133310551 -84726607 + AluJo SINE Alu 1 298 -14 3636 201 36 59 chr3 133310551 133310810 -84726348 + L1ME1 LINE L1 5012 5275 -891 2001 119 41 27 chr3 133310810 133311105 -84726053 + AluSx SINE Alu 1 299 -13 3636 201 36 59 chr3 133311105 133312024 -84725134 + L1ME1 LINE L1 5275 6161 -5 629 246 7 8 chr3 133312639 133312824 -84724334 + L1MC4 LINE L1 6743 6948 -1035 258 284 35 35 chr3 133312985 133313101 -84724057 + MIR SINE MIR 34 149 -59 2145 136 3 3 chr3 133313379 133313680 -84723478 - AluSx SINE Alu -11 301 1 1118 76 0 0 chr3 133313680 133313811 -84723347 - AluSq/x SINE Alu -177 135 5 1793 161 14 82 chr3 133314078 133314494 -84722664 + MLT1B LTR MaLR 3 390 0 2119 144 0 0 chr3 133314701 133315000 -84722158 + AluSx SINE Alu 1 299 -13 337 217 0 24 chr3 133315026 133315109 -84722049 + L1MC5 LINE L1 7827 7907 -54 418 293 68 21 chr3 133316128 133316319 -84720839 - LTR67 LTR ERVL 0 557 358 526 230 170 50 chr3 133316808 133317113 -84720045 + L1ME3A LINE L1 5361 5712 -458 1587 184 22 0 chr3 133317114 133317386 -84719772 - AluJo SINE Alu -9 303 26 928 168 0 7 chr3 133317396 133317545 -84719613 - AluJo SINE Alu -162 150 3 1438 286 53 0 chr3 133317545 133317982 -84719176 + L1ME3A LINE L1 5702 6161 -9 201 147 0 0 chr3 133318070 133318104 -84719054 - L2 LINE L2 -18 3254 3221 194 259 25 49 chr3 133318828 133318909 -84718249 - L2 LINE L2 -56 3216 3138 1884 150 31 3 chr3 133318931 133319224 -84717934 - AluSx SINE Alu -11 301 1 495 233 17 111 chr3 133319225 133319287 -84717871 - MIR SINE MIR -4 258 192 1973 161 10 6 chr3 133319287 133319598 -84717560 - AluJo SINE Alu 0 312 1 495 233 17 111 chr3 133319598 133319707 -84717451 - MIR SINE MIR -70 192 103 1106 235 57 41 chr3 133319712 133320189 -84716969 + MLT1F1 LTR MaLR 1 567 0 3185 163 17 10 chr3 133320266 133320850 -84716308 - L1PA16 LINE L1 -2 6164 5577 2020 130 34 3 chr3 133320861 133321153 -84716005 - AluSq SINE Alu -12 301 1 458 196 21 10 chr3 133321285 133321382 -84715776 + MIR SINE MIR 103 200 -62 2343 96 0 7 chr3 133321451 133321752 -84715406 - AluSc SINE Alu -10 299 1 253 281 219 9 chr3 133321805 133321911 -84715247 + MIR SINE MIR 120 253 -9 2058 114 7 39 chr3 133321911 133322217 -84714941 + AluSx SINE Alu 1 296 -16 754 163 0 15 chr3 133322278 133322413 -84714745 - FLAM_C SINE Alu 0 133 1 400 321 16 80 chr3 133323837 133324148 -84713010 - L2 LINE L2 -10 3262 2972 2505 93 0 3 chr3 133324764 133325077 -84712081 - AluSx SINE Alu 0 312 1 186 325 0 25 chr3 133325681 133325761 -84711397 - L2 LINE L2 -2 3270 3193 189 0 0 0 chr3 133325909 133325930 -84711228 + (GA)n Simple_repeat Simple_repeat 2 22 0 449 309 29 0 chr3 133326168 133326304 -84710854 - MIR SINE MIR 0 262 123 429 251 56 99 chr3 133326308 133326728 -84710430 + MLT1C LTR MaLR 1 372 -95 571 323 25 25 chr3 133328774 133329009 -84708149 + MIR SINE MIR 7 241 -21 543 255 84 65 chr3 133329738 133330060 -84707098 - MER102a DNA MER1_type -2 328 1 2174 89 4 0 chr3 133331092 133331361 -84705797 - AluY SINE Alu -41 270 1 187 183 33 83 chr3 133332182 133332242 -84704916 + L2 LINE L2 3011 3067 -246 246 277 12 24 chr3 133332338 133332421 -84704737 - L2 LINE L2 -53 3219 3138 2521 52 0 29 chr3 133332540 133332848 -84704310 - AluY SINE Alu -12 299 1 904 138 0 0 chr3 133332875 133332998 -84704160 - FLAM_C SINE Alu -19 124 2 374 161 81 11 chr3 133333010 133333097 -84704061 + MER53 DNA DNA 97 189 0 241 318 47 24 chr3 133333101 133333271 -84703887 - L2 LINE L2 -176 3096 2923 2155 122 0 10 chr3 133333470 133333766 -84703392 - AluSx SINE Alu -19 293 1 725 264 25 51 chr3 133333770 133334126 -84703032 - L2 LINE L2 -603 2711 2365 380 333 128 0 chr3 133334431 133334626 -84702532 - Charlie8 DNA MER1_type -2185 232 13 317 314 25 8 chr3 133334724 133334845 -84702313 - MER5A DNA MER1_type -22 167 45 306 278 97 21 chr3 133334725 133334869 -84702289 + MER5A DNA MER1_type 35 189 0 * 2286 110 0 0 chr3 133335843 133336135 -84701023 + AluSx SINE Alu 1 292 -20 352 312 91 21 chr3 133336208 133336493 -84700665 - L2 LINE L2 -1652 1662 1358 1785 179 0 3 chr3 133336731 133337028 -84700130 + AluJb SINE Alu 1 296 -16 2341 93 0 7 chr3 133339492 133339794 -84697364 + AluSq SINE Alu 1 300 -13 24 53 0 0 chr3 133340291 133340329 -84696829 + AT_rich Low_complexity Low_complexity 1 38 0 2493 67 0 7 chr3 133341658 133341956 -84695202 + AluY SINE Alu 1 296 -15 479 217 43 97 chr3 133343827 133344034 -84693124 - MIR SINE MIR -35 227 32 491 282 45 45 chr3 133344278 133344480 -84692678 + MER20 DNA MER1_type 1 202 -17 1552 185 20 7 chr3 133344610 133344908 -84692250 - AluJo SINE Alu -10 302 1 2022 145 17 7 chr3 133347011 133347308 -84689850 + MER1B DNA MER1_type 40 339 0 21 57 0 0 chr3 133348604 133348639 -84688519 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr3 133349795 133349825 -84687333 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr3 133350925 133350955 -84686203 + AT_rich Low_complexity Low_complexity 1 30 0 2198 91 11 3 chr3 133351577 133351864 -84685294 + AluSx SINE Alu 10 298 -14 22 0 0 0 chr3 133352767 133352789 -84684369 + AT_rich Low_complexity Low_complexity 1 22 0 210 248 119 46 chr3 133352918 133353027 -84684131 + L2 LINE L2 3197 3313 0 255 301 101 58 chr3 133353384 133353503 -84683655 + L3 LINE CR1 641 753 -824 2567 135 46 54 chr3 133353503 133354020 -84683138 + L1MB3 LINE L1 5668 6180 -3 255 301 101 58 chr3 133354020 133354245 -84682913 + L3 LINE CR1 753 1000 -577 1818 145 0 69 chr3 133355003 133355320 -84681838 - AluJb SINE Alu -17 295 1 1667 152 18 11 chr3 133355572 133355855 -84681303 + AluJo SINE Alu 12 296 -16 1633 180 18 24 chr3 133355864 133356192 -84680966 + L1MB8 LINE L1 5667 5992 -192 731 53 0 0 chr3 133356220 133356314 -84680844 + L1MA1 LINE L1 6205 6298 -4 27 0 0 0 chr3 133356314 133356341 -84680817 + AT_rich Low_complexity Low_complexity 1 27 0 591 146 51 44 chr3 133356361 133356498 -84680660 + L1MB8 LINE L1 6041 6178 0 619 129 0 20 chr3 133356501 133356602 -84680556 + FLAM_C SINE Alu 38 136 -7 1573 169 87 36 chr3 133357448 133357804 -84679354 - MLT1A2 LTR MaLR 0 374 1 384 260 21 0 chr3 133357816 133357912 -84679246 - MER58C DNA MER1_type -1 214 117 970 139 86 53 chr3 133357921 133358108 -84679050 + AluJb SINE Alu 120 312 0 2503 57 7 3 chr3 133358203 133358500 -84678658 - AluY SINE Alu -13 298 1 4160 141 56 34 chr3 133358700 133358958 -84678200 - L1MB4 LINE L1 -21 6159 5908 2179 108 0 10 chr3 133358958 133359254 -84677904 - AluSx SINE Alu -19 293 1 4160 141 56 34 chr3 133359254 133359850 -84677308 - L1MB4 LINE L1 -272 5908 5290 244 211 118 0 chr3 133359871 133359947 -84677211 - MIR SINE MIR 0 262 178 204 40 0 0 chr3 133360057 133360082 -84677076 + (CA)n Simple_repeat Simple_repeat 2 26 0 1455 157 66 2 chr3 133360511 133360852 -84676306 + MSTB1 LTR MaLR 7 430 -2 2281 209 106 77 chr3 133361339 133362695 -84674463 + L1MC4a LINE L1 6444 7855 -140 1992 138 3 3 chr3 133362695 133362991 -84674167 + AluJb SINE Alu 1 296 -16 2281 209 106 77 chr3 133362991 133363137 -84674021 + L1MC4a LINE L1 7855 7995 0 387 176 0 0 chr3 133363746 133363814 -84673344 - MIR SINE MIR -5 257 190 481 281 27 34 chr3 133363979 133364125 -84673033 + L2 LINE L2 3123 3267 -5 2049 129 0 13 chr3 133364460 133364762 -84672396 - AluSx SINE Alu -14 298 1 2492 60 0 3 chr3 133364936 133365236 -84671922 - AluY SINE Alu -12 299 1 378 187 0 0 chr3 133365645 133365720 -84671438 + MIR SINE MIR 72 146 -116 598 256 112 41 chr3 133366533 133366613 -84670545 + Charlie8 DNA MER1_type 1 74 -267 2935 3 0 0 chr3 133366613 133366922 -84670236 + AluYa5 SINE Alu 1 309 -2 598 256 112 41 chr3 133366922 133367083 -84670075 + Charlie8 DNA MER1_type 74 259 -82 2276 92 3 10 chr3 133367417 133367723 -84669435 + AluSg SINE Alu 1 304 -6 861 186 122 11 chr3 133369099 133369287 -84667871 - MER3 DNA MER1_type 0 209 1 1681 129 19 83 chr3 133370727 133371052 -84666106 + AluJo SINE Alu 1 304 -8 224 288 62 82 chr3 133372134 133372280 -84664878 - MIR SINE MIR -70 192 50 399 328 29 11 chr3 133372901 133373075 -84664083 - MER5A DNA MER1_type -6 183 7 621 149 167 0 chr3 133373375 133373489 -84663669 - FLAM_C SINE Alu 0 133 1 211 300 158 8 chr3 133373556 133373676 -84663482 + MIR SINE MIR 54 191 -71 4038 180 35 1 chr3 133375949 133376656 -84660502 + MER44D DNA MER2_type 3 605 0 541 200 0 0 chr3 133376679 133376779 -84660379 + AluJ/FLAM SINE Alu 1 100 -212 2166 126 0 3 chr3 133377802 133378103 -84659055 - AluSx SINE Alu -11 301 2 1807 168 3 10 chr3 133378145 133378437 -84658721 + AluJo SINE Alu 1 290 -22 195 139 0 0 chr3 133378444 133378480 -84658678 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr3 133378612 133378634 -84658524 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr3 133378900 133378920 -84658238 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1577 161 7 46 chr3 133378952 133379111 -84658047 - AluJo SINE Alu -19 293 150 2318 94 0 0 chr3 133379111 133379409 -84657749 - AluSc SINE Alu -11 298 1 1577 161 7 46 chr3 133379409 133379554 -84657604 - AluJo SINE Alu -162 150 1 1969 106 0 8 chr3 133379565 133379849 -84657309 - AluSc SINE Alu 0 301 20 1798 129 61 24 chr3 133380019 133380313 -84656845 - AluSx SINE Alu -7 305 1 793 248 77 48 chr3 133380443 133380818 -84656340 - L1ME4a LINE L1 -234 5887 5502 2115 109 13 22 chr3 133381251 133381562 -84655596 + AluSx SINE Alu 1 308 -4 1925 142 0 11 chr3 133381856 133382138 -84655020 - AluJb SINE Alu -20 292 14 299 244 156 0 chr3 133382387 133382477 -84654681 - L2 LINE L2 -16 3297 3194 195 382 59 20 chr3 133382520 133382672 -84654486 - L2 LINE L2 -537 2777 2620 207 0 0 0 chr3 133382732 133382755 -84654403 + (TG)n Simple_repeat Simple_repeat 1 23 0 5514 115 76 43 chr3 133382961 133384048 -84653110 + Tigger3b DNA MER2_type 1 1123 -108 276 252 18 27 chr3 133384748 133384859 -84652299 - L1MC4a LINE L1 -1867 5941 5832 1520 239 178 17 chr3 133385177 133385892 -84651266 + HAL1b LINE L1 77 906 -442 1340 177 28 35 chr3 133386011 133386281 -84650877 + AluJo SINE Alu 25 294 -18 267 31 0 0 chr3 133386281 133386313 -84650845 + (CA)n Simple_repeat Simple_repeat 2 33 0 1340 177 28 35 chr3 133386313 133386324 -84650834 + AluJo SINE Alu 294 304 -8 230 329 40 13 chr3 133386427 133386579 -84650579 + HAL1b LINE L1 1191 1346 -2 2216 112 3 7 chr3 133387991 133388295 -84648863 + AluSx SINE Alu 1 303 -9 1637 156 52 42 chr3 133388507 133388814 -84648344 + AluJo SINE Alu 1 310 -2 24 53 0 0 chr3 133389588 133389626 -84647532 + AT_rich Low_complexity Low_complexity 1 38 0 2290 103 3 0 chr3 133389691 133389981 -84647177 + AluSx SINE Alu 1 291 -21 343 243 117 10 chr3 133390309 133390412 -84646746 - MIR3 SINE MIR -19 189 76 588 327 46 43 chr3 133390539 133390595 -84646563 + L1ME LINE L1 5221 5275 -846 2595 11 0 0 chr3 133390595 133390877 -84646281 + AluYa5 SINE Alu 28 309 -2 588 327 46 43 chr3 133390877 133391297 -84645861 + L1ME LINE L1 5275 5706 -415 433 209 10 114 chr3 133391455 133391656 -84645502 + L1MC5 LINE L1 6784 6963 -998 365 167 14 0 chr3 133392053 133392125 -84645033 + L1MC5 LINE L1 6973 7045 -916 311 242 55 79 chr3 133392184 133392349 -84644809 + L1MC4a LINE L1 6046 6206 -1602 1319 149 18 104 chr3 133393297 133393632 -84643526 - MLT1B LTR MaLR -82 308 3 1091 76 0 0 chr3 133393899 133394030 -84643128 + AluSq/x SINE Alu 5 135 -177 2117 136 3 3 chr3 133394030 133394331 -84642827 + AluSx SINE Alu 1 301 -11 267 293 26 26 chr3 133394609 133394725 -84642433 - MIR SINE MIR -59 149 34 599 205 0 0 chr3 133394944 133395071 -84642087 - L1MC4 LINE L1 -1094 6948 6822 3509 187 37 49 chr3 133395686 133396604 -84640554 - L1ME1 LINE L1 -5 6161 5255 2324 101 0 26 chr3 133396605 133396912 -84640246 - AluSx SINE Alu -13 299 1 24 53 0 0 chr3 133396977 133397015 -84640143 + AT_rich Low_complexity Low_complexity 1 38 0 1637 156 52 42 chr3 133397789 133398096 -84639062 - AluJo SINE Alu -2 310 1 2216 112 3 7 chr3 133398308 133398612 -84638546 - AluSx SINE Alu -9 303 1 230 329 40 13 chr3 133400025 133400177 -84636981 - HAL1b LINE L1 -2 1346 1191 1340 177 28 35 chr3 133400280 133400291 -84636867 - AluJo SINE Alu -8 304 294 267 31 0 0 chr3 133400291 133400323 -84636835 + (TG)n Simple_repeat Simple_repeat 2 33 0 1340 177 28 35 chr3 133400323 133400593 -84636565 - AluJo SINE Alu -18 294 25 1520 239 178 17 chr3 133400712 133401427 -84635731 - HAL1b LINE L1 -442 906 77 276 252 18 27 chr3 133401745 133401856 -84635302 + L1MC4a LINE L1 5832 5941 -1867 5514 115 76 43 chr3 133402558 133403645 -84633513 - Tigger3b DNA MER2_type -108 1123 1 207 0 0 0 chr3 133403851 133403874 -84633284 + (CA)n Simple_repeat Simple_repeat 1 23 0 699 278 101 0 chr3 133504011 133504238 -84532920 - Charlie1 DNA MER1_type -2511 250 1 332 240 152 32 chr3 133504272 133504397 -84532761 - HAL1 LINE L1 -1227 1280 1141 442 214 8 15 chr3 133504409 133504540 -84532618 + CT-rich Low_complexity Low_complexity 1 130 0 1938 163 0 10 chr3 133504540 133504834 -84532324 - AluJb SINE Alu -21 291 1 819 259 157 8 chr3 133504834 133505197 -84531961 - HAL1 LINE L1 -1349 1158 742 2140 155 35 37 chr3 133505354 133505905 -84531253 + MLT2A2 LTR ERVL 1 554 0 1715 144 15 4 chr3 133506041 133506304 -84530854 - AluJb SINE Alu -22 290 25 2113 133 19 0 chr3 133506707 133507015 -84530143 + LTR57 LTR ERVL 91 404 -7 885 172 57 6 chr3 133507020 133507177 -84529981 + FRAM SINE Alu 3 167 -9 1912 134 29 0 chr3 133507455 133507753 -84529405 - AluSx SINE Alu 0 306 1 874 142 60 0 chr3 133507756 133507890 -84529268 - FRAM SINE Alu -16 160 19 243 302 42 10 chr3 133508174 133508270 -84528888 - HAL1 LINE L1 -1772 735 637 497 195 0 0 chr3 133508288 133508375 -84528783 + MER45A DNA AcHobo 1 87 -91 243 0 0 0 chr3 133508376 133508403 -84528755 + (A)n Simple_repeat Simple_repeat 1 27 0 538 153 59 0 chr3 133508534 133508619 -84528539 + MER45A DNA AcHobo 89 178 0 370 292 72 47 chr3 133508626 133508862 -84528296 - HAL1 LINE L1 -1889 618 377 1186 140 0 0 chr3 133508913 133509077 -84528081 - FRAM SINE Alu -12 164 1 355 174 159 98 chr3 133509161 133509293 -84527865 - HAL1 LINE L1 -2350 157 18 2356 53 42 3 chr3 133509448 133509733 -84527425 + AluY SINE Alu 1 296 -15 271 275 12 0 chr3 133510713 133510793 -84526365 + MIR SINE MIR 114 194 -68 370 227 0 0 chr3 133510933 133510999 -84526159 - MER2 DNA MER2_type 0 345 280 2095 138 3 0 chr3 133511007 133511303 -84525855 + AluSx SINE Alu 1 297 -15 611 62 39 16 chr3 133511303 133511432 -84525726 + (TA)n Simple_repeat Simple_repeat 2 133 0 814 87 87 7 chr3 133511919 133512025 -84525133 + L1MA8 LINE L1 6143 6264 -27 324 0 0 0 chr3 133512025 133512061 -84525097 + (TG)n Simple_repeat Simple_repeat 2 37 0 814 87 87 7 chr3 133512061 133512092 -84525066 + L1MA8 LINE L1 6264 6291 0 255 200 42 19 chr3 133512103 133512192 -84524966 - MIR SINE MIR -105 103 15 187 302 81 35 chr3 133512571 133512657 -84524501 + L2 LINE L2 3169 3258 -14 438 250 56 66 chr3 133512956 133513152 -84524006 + MIR SINE MIR 69 262 0 2278 106 0 0 chr3 133513512 133513804 -84523354 + AluSx SINE Alu 1 292 -20 287 265 0 24 chr3 133514812 133514895 -84522263 - MER5B DNA MER1_type -96 82 2 754 235 142 0 chr3 133514903 133515107 -84522051 + MIR SINE MIR 28 260 -2 830 267 134 16 chr3 133515538 133516085 -84521073 + L2 LINE L2 2711 3312 -1 282 68 23 0 chr3 133516211 133516255 -84520903 - MADE1 DNA Mariner -35 45 1 25 51 0 0 chr3 133517391 133517430 -84519728 + AT_rich Low_complexity Low_complexity 1 39 0 196 333 135 0 chr3 133517829 133517925 -84519233 + MIR SINE MIR 37 145 -117 236 158 0 0 chr3 133518335 133518373 -84518785 - MER33 DNA MER1_type -5 358 321 1365 140 0 61 chr3 133518374 133518548 -84518610 - AluJb SINE Alu -15 297 114 405 0 0 0 chr3 133518548 133518593 -84518565 + (TATG)n Simple_repeat Simple_repeat 2 46 0 2146 126 0 0 chr3 133518593 133518879 -84518279 - AluSg SINE Alu -24 286 1 1365 140 0 61 chr3 133518879 133518931 -84518227 - AluJb SINE Alu -196 116 84 1247 170 108 4 chr3 133518931 133519190 -84517968 - MER33 DNA MER1_type -38 286 1 2740 138 27 2 chr3 133519270 133519684 -84517474 + MSTB LTR MaLR 1 424 -2 374 220 55 0 chr3 133520003 133520094 -84517064 - MER5A DNA MER1_type -85 104 9 380 121 45 0 chr3 133520140 133520206 -84516952 - MER5A DNA MER1_type 0 189 121 536 158 0 50 chr3 133521382 133521483 -84515675 - AluJo SINE Alu -94 218 123 2079 131 6 16 chr3 133521512 133521826 -84515332 + AluSx SINE Alu 1 311 -1 419 146 13 166 chr3 133521849 133522000 -84515158 + L2 LINE L2 3179 3306 -7 489 254 41 0 chr3 133522305 133522427 -84514731 + MER20B DNA MER1_type 1 127 -656 230 136 153 34 chr3 133523350 133523409 -84513749 + MER20B DNA MER1_type 519 584 -199 507 230 58 49 chr3 133523409 133523635 -84513523 + MER20B DNA MER1_type 555 782 -1 447 252 42 0 chr3 133523678 133523797 -84513361 - MER94 DNA DNA 0 134 11 2047 176 23 30 chr3 133524513 133524940 -84512218 - L1MB5 LINE L1 0 6174 5751 600 292 185 3 chr3 133525431 133525804 -84511354 - L2 LINE L2 -1052 2262 1822 398 281 82 37 chr3 133525804 133526074 -84511084 - L1ME4a LINE L1 -251 5870 5589 527 285 69 41 chr3 133527322 133527568 -84509590 + MIR SINE MIR 8 260 -2 1389 238 40 55 chr3 133528015 133528436 -84508722 - MLT1J2 LTR MaLR -11 439 25 2711 75 11 0 chr3 133528805 133529165 -84507993 - THE1B LTR MaLR 0 364 1 354 377 38 6 chr3 133529396 133529555 -84507603 + MIR SINE MIR 18 181 -81 2182 101 49 0 chr3 133530429 133530716 -84506442 - AluSx SINE Alu -11 301 1 417 259 88 29 chr3 133531363 133531533 -84505625 + MER112 DNA MER1_type 17 196 -64 327 319 75 21 chr3 133531643 133531831 -84505327 + L1MC5 LINE L1 7734 7931 -30 461 307 105 20 chr3 133532759 133533159 -84503999 - L2 LINE L2 -246 3067 2631 248 189 0 0 chr3 133535162 133535215 -84501943 - L1ME4a LINE L1 -7 6114 6062 303 289 100 24 chr3 133535250 133535499 -84501659 - L1ME4a LINE L1 -188 5933 5666 770 263 62 64 chr3 133535548 133536095 -84501063 + L1MC5 LINE L1 7371 7916 -45 4150 167 31 37 chr3 133536730 133537422 -84499736 - L1MB7 LINE L1 -9 6175 5481 1773 183 3 13 chr3 133537422 133537722 -84499436 - AluJo SINE Alu -15 297 1 4150 167 31 37 chr3 133537722 133537769 -84499389 - L1MB7 LINE L1 -703 5481 5435 1772 172 10 7 chr3 133537769 133538066 -84499092 - AluJo SINE Alu -14 298 1 4150 167 31 37 chr3 133538066 133538296 -84498862 - L1MB7 LINE L1 -749 5435 5209 3585 226 21 61 chr3 133538289 133539051 -84498107 - L1M4 LINE L1 -5612 930 139 * 248 51 0 26 chr3 133539051 133539090 -84498068 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3585 226 21 61 chr3 133539090 133539127 -84498031 - L1M4 LINE L1 -6403 139 102 1799 155 16 35 chr3 133539127 133539443 -84497715 - AluJo SINE Alu 0 312 3 3585 226 21 61 chr3 133539443 133539595 -84497563 - L1M4 LINE L1 -6440 102 16 288 288 82 78 chr3 133539725 133540044 -84497114 + L2 LINE L2 1479 1798 -1516 548 344 61 4 chr3 133540060 133540290 -84496868 - MIR SINE MIR 0 262 20 211 240 60 0 chr3 133540600 133540650 -84496508 + L2 LINE L2 3236 3288 -25 338 307 29 14 chr3 133541892 133542032 -84495126 + MIR SINE MIR 92 233 -29 224 208 0 0 chr3 133542063 133542111 -84495047 + L2 LINE L2 3266 3313 0 419 302 50 0 chr3 133542430 133542569 -84494589 + MIR3 SINE MIR 20 165 -43 2121 98 11 4 chr3 133542623 133542899 -84494259 + AluSq SINE Alu 1 278 -35 213 39 0 0 chr3 133542899 133542925 -84494233 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 615 196 9 0 chr3 133543270 133543382 -84493776 - MER58B DNA MER1_type -6 335 223 823 137 15 0 chr3 133543384 133543515 -84493643 + FLAM_C SINE Alu 1 133 0 354 172 0 0 chr3 133543556 133543614 -84493544 + AluSp/q SINE Alu 240 297 -6 945 214 36 13 chr3 133543627 133543851 -84493307 - MER58B DNA MER1_type -111 230 2 238 298 91 47 chr3 133546525 133546746 -84490412 - MIR SINE MIR -10 252 9 509 247 123 35 chr3 133547948 133548175 -84488983 + MIR SINE MIR 16 262 0 197 240 0 20 chr3 133548648 133548698 -84488460 + L2 LINE L2 3021 3069 -203 731 289 89 33 chr3 133548727 133549213 -84487945 - L2 LINE L2 0 3313 2794 184 254 51 17 chr3 133549253 133549312 -84487846 + L2 LINE L2 3159 3219 -94 2228 116 0 19 chr3 133549506 133549824 -84487334 + AluJb SINE Alu 1 312 0 328 309 74 0 chr3 133552244 133552411 -84484747 - MIR SINE MIR -64 144 6 345 303 8 16 chr3 133552590 133552712 -84484446 + CT-rich Low_complexity Low_complexity 2 122 0 189 234 15 33 chr3 133553434 133553499 -84483659 + MIR SINE MIR 87 141 -67 459 0 0 0 chr3 133554037 133554088 -84483070 + (CA)n Simple_repeat Simple_repeat 2 52 0 191 299 30 15 chr3 133554265 133554332 -84482826 + MIR SINE MIR 40 107 -101 891 255 54 14 chr3 133556289 133556567 -84480591 - L1ME1 LINE L1 -3 6163 5875 1103 103 0 0 chr3 133556567 133556703 -84480455 - AluJb SINE Alu -19 293 158 1905 202 44 16 chr3 133556705 133557136 -84480022 - L1ME1 LINE L1 -281 5885 5443 240 277 191 45 chr3 133557177 133557513 -84479645 + L1MC4a LINE L1 5791 6175 -1633 2410 68 0 13 chr3 133558229 133558537 -84478621 + AluY SINE Alu 1 304 -7 378 270 43 43 chr3 133558537 133558700 -84478458 - MIR SINE MIR -15 247 85 2221 156 111 59 chr3 133560241 133560780 -84476378 - MLT1F1 LTR MaLR 0 567 1 273 311 14 0 chr3 133560932 133561006 -84476152 + L2 LINE L2 3236 3310 -3 291 153 53 35 chr3 133561382 133561468 -84475690 - MLT1G1 LTR MaLR 0 590 459 367 354 50 11 chr3 133562039 133562220 -84474938 - MIR3 SINE MIR -1 207 20 187 265 0 59 chr3 133562359 133562427 -84474731 - L2 LINE L2 -518 2796 2733 2422 71 6 53 chr3 133562728 133563051 -84474107 - AluY SINE Alu -3 308 1 187 246 72 0 chr3 133564765 133564834 -84472324 + MIR SINE MIR 51 124 -138 833 178 0 8 chr3 133564835 133564964 -84472194 - FLAM_C SINE Alu -13 130 3 317 325 48 8 chr3 133564966 133565092 -84472066 + MIR SINE MIR 101 231 -31 201 158 0 0 chr3 133565844 133565882 -84471276 + (ATTG)n Simple_repeat Simple_repeat 2 39 0 180 0 0 0 chr3 133566417 133566437 -84470721 + (T)n Simple_repeat Simple_repeat 1 20 0 507 226 250 10 chr3 133569935 133570143 -84467015 - MIR SINE MIR 0 262 5 199 246 14 58 chr3 133572023 133572092 -84465066 - MIR SINE MIR -13 249 184 382 292 32 32 chr3 133575636 133575821 -84461337 - MIR3 SINE MIR -5 203 19 1395 252 210 26 chr3 133578598 133579708 -84457450 - L2 LINE L2 0 3313 2409 1646 172 32 0 chr3 133579708 133579987 -84457171 + AluJb SINE Alu 1 288 -24 696 70 0 26 chr3 133579987 133580102 -84457056 + (GGAA)n Simple_repeat Simple_repeat 3 114 0 1395 252 210 26 chr3 133580102 133580222 -84456936 - L2 LINE L2 -903 2410 1847 246 264 83 0 chr3 133580222 133580294 -84456864 - MIR SINE MIR -139 123 46 2347 84 0 0 chr3 133580429 133580733 -84456425 - AluSq SINE Alu 0 304 1 271 279 13 0 chr3 133580773 133580852 -84456306 - MER116 DNA Mariner 0 80 1 366 304 37 0 chr3 133580963 133581087 -84456071 - MIR SINE MIR -67 141 25 1963 142 0 40 chr3 133582037 133582362 -84454796 - AluJb SINE Alu 0 312 1 350 328 35 11 chr3 133582381 133582564 -84454594 - MIR SINE MIR -43 219 34 1932 109 57 21 chr3 133582837 133583120 -84454038 + AluSx SINE Alu 1 293 -19 371 262 170 14 chr3 133583380 133583521 -84453637 + MER5B DNA MER1_type 16 178 0 198 0 0 0 chr3 133584606 133584628 -84452530 + (CAGCC)n Simple_repeat Simple_repeat 4 25 0 754 160 58 146 chr3 133586442 133586717 -84450441 - ORSL DNA AcHobo -24 251 1 598 190 52 46 chr3 133587540 133587714 -84449444 + MER5B DNA MER1_type 1 175 -3 2572 62 0 0 chr3 133588343 133588647 -84448511 - AluSc SINE Alu -5 304 1 335 340 43 55 chr3 133588704 133588957 -84448201 - L1ME4a LINE L1 -4 6117 5868 207 69 0 0 chr3 133589002 133589031 -84448127 + (TG)n Simple_repeat Simple_repeat 2 30 0 338 341 69 32 chr3 133589482 133589699 -84447459 - MIR SINE MIR 0 262 38 315 0 0 0 chr3 133589754 133589789 -84447369 + (TA)n Simple_repeat Simple_repeat 1 35 0 306 191 32 119 chr3 133589886 133590012 -84447146 - L1MC4 LINE L1 -239 7803 7689 400 319 64 0 chr3 133590283 133590424 -84446734 + MIR3 SINE MIR 41 190 -18 336 282 155 0 chr3 133592645 133592748 -84444410 - L2 LINE L2 0 3272 3154 185 283 53 44 chr3 133592873 133592986 -84444172 - L2 LINE L2 -291 2981 2868 310 257 0 14 chr3 133593037 133593111 -84444047 + MER5A DNA MER1_type 117 189 0 307 296 298 10 chr3 133593217 133593626 -84443532 - L2 LINE L2 -535 2779 2253 692 137 40 2 chr3 133594258 133594519 -84442639 + AluJb SINE Alu 1 312 0 225 396 16 6 chr3 133594597 133594760 -84442398 + MIR SINE MIR 30 143 -65 1134 183 64 41 chr3 133595206 133595661 -84441497 - MLT1B LTR MaLR 0 467 1 652 224 34 20 chr3 133596779 133596903 -84440255 + MER3 DNA MER1_type 1 129 -33 1765 166 48 0 chr3 133596903 133597192 -84439966 - AluJo SINE Alu -4 308 6 652 224 34 20 chr3 133597192 133597214 -84439944 + MER3 DNA MER1_type 129 149 -60 1112 156 14 170 chr3 133597500 133597609 -84439549 - L1MC4 LINE L1 -1 8041 7917 2295 126 0 0 chr3 133597609 133597918 -84439240 - AluSx SINE Alu -3 309 1 1112 156 14 170 chr3 133597918 133598237 -84438921 - L1MC4 LINE L1 -125 7917 7680 201 217 17 50 chr3 133598355 133598415 -84438743 + L2 LINE L2 3215 3272 0 796 206 114 44 chr3 133598715 133598987 -84438171 - L2 LINE L2 0 3313 3023 1636 224 111 29 chr3 133598992 133599479 -84437679 - L1ME1 LINE L1 0 6166 5640 186 133 0 0 chr3 133599671 133599701 -84437457 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 2355 113 0 7 chr3 133600040 133600350 -84436808 - AluSx SINE Alu -4 308 1 1204 114 9 59 chr3 133602362 133602522 -84434636 + MER3 DNA MER1_type 1 149 -60 2281 160 13 26 chr3 133602522 133602977 -84434181 - L1MB7 LINE L1 -8 6176 5728 1204 114 9 59 chr3 133602977 133603036 -84434122 + MER3 DNA MER1_type 149 209 0 295 242 97 124 chr3 133604717 133604903 -84432255 - MER91A DNA MER1_type -13 183 3 242 171 0 0 chr3 133605081 133605122 -84432036 + MIR3 SINE MIR 160 200 -8 22 0 0 0 chr3 133607100 133607122 -84430036 + AT_rich Low_complexity Low_complexity 1 22 0 313 311 38 23 chr3 133608956 133609088 -84428070 - MIR SINE MIR -50 212 79 427 226 179 48 chr3 133609579 133609747 -84427411 - MIR SINE MIR -69 193 4 349 387 5 20 chr3 133611010 133611209 -84425949 - L2 LINE L2 -173 3099 2904 240 225 67 45 chr3 133611381 133611470 -84425688 + MER5A DNA MER1_type 10 100 -89 852 291 26 4 chr3 133611777 133612011 -84425147 - MIR SINE MIR -4 258 20 364 335 216 16 chr3 133612023 133612629 -84424529 - L2 LINE L2 -838 2476 1750 2293 117 0 3 chr3 133612653 133612960 -84424198 + AluSx SINE Alu 1 306 -6 387 0 0 0 chr3 133613640 133613683 -84423475 + (CA)n Simple_repeat Simple_repeat 2 44 0 278 281 24 0 chr3 133614665 133614747 -84422411 - L2 LINE L2 -3 3269 3186 701 189 0 0 chr3 133615566 133615698 -84421460 - FLAM_A SINE Alu -1 132 1 237 223 0 0 chr3 133617167 133617261 -84419897 + (CA)n Simple_repeat Simple_repeat 2 95 0 309 252 54 0 chr3 133617409 133617520 -84419638 - MIR3 SINE MIR -22 186 70 1239 108 33 19 chr3 133618978 133619190 -84417968 + L1PA10 LINE L1 5954 6168 0 211 265 41 0 chr3 133619207 133619256 -84417902 + MIR3 SINE MIR 137 187 -21 996 85 0 0 chr3 133619815 133619945 -84417213 + FLAM_C SINE Alu 1 130 -3 692 250 104 0 chr3 133620017 133620181 -84416977 - MER58A DNA MER1_type -41 183 3 267 103 0 0 chr3 133621118 133621157 -84416001 + (CA)n Simple_repeat Simple_repeat 2 40 0 1008 261 59 79 chr3 133621281 133621520 -84415638 - L1MC4a LINE L1 -1700 6108 5866 1820 140 70 0 chr3 133621520 133621805 -84415353 - AluSx SINE Alu -7 305 1 1008 261 59 79 chr3 133621805 133622121 -84415037 - L1MC4a LINE L1 -1942 5866 5564 457 345 52 5 chr3 133622333 133622524 -84414634 + MIR SINE MIR 11 210 -52 465 298 0 13 chr3 133624652 133624803 -84412355 + MER5B DNA MER1_type 1 149 -29 702 194 26 19 chr3 133624821 133624976 -84412182 - MIR SINE MIR -12 250 95 513 237 126 20 chr3 133625292 133625497 -84411661 - MIR SINE MIR 0 262 21 1254 188 0 5 chr3 133625592 133625805 -84411353 + AluJo SINE Alu 90 301 -11 440 150 0 35 chr3 133625805 133625918 -84411240 + GA-rich Low_complexity Low_complexity 2 110 0 1461 151 33 3 chr3 133626088 133626379 -84410779 - L1 LINE L1 -1603 5185 4883 495 0 0 0 chr3 133626379 133626434 -84410724 + (TA)n Simple_repeat Simple_repeat 2 56 0 1461 151 33 3 chr3 133626434 133626446 -84410712 - L1 LINE L1 -1905 4883 4873 * 7670 170 126 108 chr3 133626442 133628865 -84408293 - L1 LINE L1 -4219 2570 107 1980 172 13 0 chr3 133628960 133629262 -84407896 - AluJo SINE Alu -6 306 1 1701 258 175 30 chr3 133629653 133629739 -84407419 - L2 LINE L2 -86 3227 3155 2197 114 0 0 chr3 133629739 133630047 -84407111 + AluSq SINE Alu 1 308 -5 1701 258 175 30 chr3 133630047 133631038 -84406120 - L2 LINE L2 -158 3155 1969 2175 178 28 8 chr3 133631885 133632273 -84404885 - MSTD LTR MaLR 0 396 1 27 0 0 0 chr3 133632955 133632982 -84404176 + AT_rich Low_complexity Low_complexity 1 27 0 1921 142 0 16 chr3 133633100 133633403 -84403755 + AluSx SINE Alu 1 298 -14 861 38 0 0 chr3 133633412 133633517 -84403641 + (GGAA)n Simple_repeat Simple_repeat 4 108 0 198 0 0 0 chr3 133634319 133634341 -84402817 + (A)n Simple_repeat Simple_repeat 1 22 0 1774 206 68 25 chr3 133634555 133634997 -84402161 - LTR40b LTR ERVL 0 462 2 249 389 46 8 chr3 133635022 133635153 -84402005 - MIR SINE MIR -6 256 121 358 252 173 7 chr3 133635235 133635374 -84401784 - MIR SINE MIR -3 259 98 1528 166 4 4 chr3 133635422 133635700 -84401458 - AluJb SINE Alu -13 299 22 659 232 141 49 chr3 133635743 133636049 -84401109 + L3 LINE CR1 1101 1434 -143 330 271 125 28 chr3 133637737 133637881 -84399277 - MIR SINE MIR -74 188 31 429 227 42 34 chr3 133638149 133638268 -84398890 + L2 LINE L2 3193 3312 -1 346 318 61 46 chr3 133638939 133639037 -84398121 + L1ME4a LINE L1 5591 5686 -435 2000 128 0 0 chr3 133639037 133639346 -84397812 + AluSx SINE Alu 1 309 0 346 318 61 46 chr3 133639346 133639507 -84397651 + L1ME4a LINE L1 5686 5855 -266 24 32 0 0 chr3 133639528 133639559 -84397599 + AT_rich Low_complexity Low_complexity 1 31 0 285 256 39 0 chr3 133640157 133640235 -84396923 - MER94 DNA DNA -53 81 1 2238 96 0 0 chr3 133640322 133640614 -84396544 + AluSx SINE Alu 3 294 -18 2238 99 0 3 chr3 133644576 133644888 -84392270 - AluSq SINE Alu -2 311 1 284 271 59 12 chr3 133644969 133645054 -84392104 + MIR3 SINE MIR 85 173 -35 641 304 50 54 chr3 133645147 133645407 -84391751 + MIR SINE MIR 1 259 -3 202 146 24 24 chr3 133645435 133645476 -84391682 + MIR SINE MIR 99 139 -69 224 231 0 39 chr3 133645767 133645819 -84391339 + MIR3 SINE MIR 145 194 -14 2002 110 3 20 chr3 133646686 133646986 -84390172 - AluSq SINE Alu -18 295 1 299 251 96 90 chr3 133647036 133647168 -84389990 + MIR SINE MIR 28 112 -96 2067 90 3 14 chr3 133647168 133647478 -84389680 + AluSx SINE Alu 1 307 0 299 251 96 90 chr3 133647478 133647511 -84389647 + MIR SINE MIR 112 143 -65 378 239 45 0 chr3 133647833 133647921 -84389237 + MIR3 SINE MIR 109 200 -8 26 0 0 0 chr3 133648030 133648056 -84389102 + AT_rich Low_complexity Low_complexity 1 26 0 499 294 4 93 chr3 133648186 133648434 -84388724 - MIR SINE MIR -12 250 25 275 250 50 25 chr3 133650072 133650152 -84387006 + MIR SINE MIR 181 262 0 295 284 60 60 chr3 133650621 133650737 -84386421 - MIR SINE MIR -86 122 6 220 245 38 0 chr3 133651903 133651956 -84385202 - MIR SINE MIR -99 163 109 4513 146 9 14 chr3 133651964 133652702 -84384456 + L1PA16 LINE L1 5419 6153 -13 2067 162 128 17 chr3 133652834 133653303 -84383855 + Charlie1b DNA MER1_type 3 523 0 291 273 112 13 chr3 133655869 133655993 -84381165 + MIR SINE MIR 29 167 -41 436 292 112 6 chr3 133656300 133656461 -84380697 - MIR SINE MIR -16 246 69 250 219 96 55 chr3 133656734 133656807 -84380351 + L2 LINE L2 3238 3313 0 253 227 27 45 chr3 133656886 133656996 -84380162 + L1MC5 LINE L1 7803 7910 -51 25 0 0 0 chr3 133657000 133657025 -84380133 + AT_rich Low_complexity Low_complexity 1 25 0 553 306 65 31 chr3 133657096 133657387 -84379771 - L1ME LINE L1 -348 5773 5473 1003 244 4 63 chr3 133657745 133658015 -84379143 + MIR SINE MIR 9 262 0 315 269 0 90 chr3 133658559 133658693 -84378465 + LTR67 LTR ERVL 428 549 -8 353 311 72 0 chr3 133658704 133658871 -84378287 + L1ME LINE L1 5625 5803 -318 911 216 87 26 chr3 133659097 133659328 -84377830 + MIR SINE MIR 18 262 0 343 306 94 19 chr3 133659510 133659670 -84377488 + MIR3 SINE MIR 30 201 -7 1765 131 31 22 chr3 133661493 133661813 -84375345 + L1MB7 LINE L1 5808 6130 -54 340 92 105 26 chr3 133662273 133662349 -84374809 - L1MB5 LINE L1 -11 6163 6082 454 180 102 155 chr3 133663808 133664053 -84373105 + MLT1L LTR MaLR 223 454 -161 231 170 0 0 chr3 133664401 133664448 -84372710 + CT-rich Low_complexity Low_complexity 2 48 0 450 310 78 35 chr3 133664534 133664766 -84372392 + MER115 DNA AcHobo 6 247 -446 1734 46 18 0 chr3 133665521 133665739 -84371419 + L1PA3 LINE L1 5934 6155 0 1987 77 55 26 chr3 133667337 133667647 -84369511 - L1MA1 LINE L1 -6 6296 5978 2298 78 0 3 chr3 133667816 133668111 -84369047 - AluSx SINE Alu -18 294 1 1104 136 0 88 chr3 133668206 133668434 -84368724 - MER3 DNA MER1_type -1 208 1 237 292 67 42 chr3 133669441 133669561 -84367597 - MER5B DNA MER1_type -5 173 51 471 243 178 13 chr3 133669565 133669717 -84367441 - MER5A DNA MER1_type 0 189 13 1166 185 101 13 chr3 133669735 133670033 -84367125 + MER33 DNA MER1_type 1 324 0 491 123 0 0 chr3 133670129 133670202 -84366956 - AluJ/FRAM SINE Alu -8 304 232 225 298 48 0 chr3 133671507 133671591 -84365567 - L2 LINE L2 -101 3212 3125 241 196 0 0 chr3 133672528 133672574 -84364584 - LTR16A1 LTR ERVL 0 457 412 286 197 141 0 chr3 133672599 133672670 -84364488 - LTR16A1 LTR ERVL -376 81 1 210 333 35 23 chr3 133672709 133672796 -84364362 - MIR SINE MIR -78 130 43 201 308 44 22 chr3 133673138 133673229 -84363929 + MIR3 SINE MIR 110 202 -6 222 37 0 0 chr3 133675469 133675496 -84361662 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1607 173 11 11 chr3 133675498 133675781 -84361377 - AluJo SINE Alu -29 283 1 360 262 141 102 chr3 133676275 133676657 -84360501 + MLT1K LTR MaLR 187 583 -5 392 298 50 61 chr3 133676675 133676820 -84360338 + MIR SINE MIR 26 171 -91 264 30 0 0 chr3 133676820 133676853 -84360305 + (TATG)n Simple_repeat Simple_repeat 1 33 0 2137 89 4 0 chr3 133676853 133677134 -84360024 - AluSp SINE Alu -31 282 1 392 298 50 61 chr3 133677134 133677168 -84359990 + MIR SINE MIR 169 204 -58 2159 97 0 3 chr3 133678400 133678690 -84358468 + AluSq SINE Alu 1 289 -24 523 246 88 44 chr3 133678699 133678883 -84358275 - HAL1 LINE L1 0 2507 2332 1851 148 3 10 chr3 133678883 133679188 -84357970 - AluJb SINE Alu -9 303 1 523 246 88 44 chr3 133679188 133679221 -84357937 - HAL1 LINE L1 -175 2332 2302 1230 165 56 127 chr3 133679221 133679614 -84357544 + MLT1A1 LTR MaLR 1 365 0 523 246 88 44 chr3 133679614 133679692 -84357466 - HAL1 LINE L1 -205 2302 2198 2970 272 118 65 chr3 133679749 133681499 -84355659 - HAL1 LINE L1 -385 2122 280 3501 129 51 99 chr3 133681700 133681906 -84355252 + L1MB3 LINE L1 5469 5683 -500 2191 119 3 0 chr3 133681906 133682217 -84354941 + AluSx SINE Alu 1 312 0 3501 129 51 99 chr3 133682217 133682759 -84354399 + L1MB3 LINE L1 5683 6181 -2 303 293 10 10 chr3 133682755 133682854 -84354304 - L1M4 LINE L1 -1286 4860 4762 * 2090 127 0 0 chr3 133683981 133684289 -84352869 + AluSx SINE Alu 1 308 -4 486 315 31 86 chr3 133686195 133686487 -84350671 + L2 LINE L2 2994 3269 -3 23 33 0 0 chr3 133686553 133686583 -84350575 + AT_rich Low_complexity Low_complexity 1 30 0 1971 121 0 41 chr3 133686685 133686999 -84350159 + AluSq SINE Alu 1 301 -12 762 308 82 59 chr3 133687124 133687646 -84349512 + L3 LINE CR1 976 1509 -68 345 311 131 19 chr3 133688019 133688279 -84348879 - L1M4 LINE L1 -2851 3295 3007 1930 161 49 3 chr3 133688286 133688635 -84348523 - MER47A DNA MER2_type 0 366 2 313 308 42 8 chr3 133688739 133688859 -84348299 + L1ME4a LINE L1 4412 4535 -1611 489 274 203 26 chr3 133688928 133689553 -84347605 + L1ME4a LINE L1 4791 5551 -771 228 232 192 20 chr3 133689624 133689723 -84347435 + L1ME4a LINE L1 5573 5688 -433 292 224 168 49 chr3 133689930 133690073 -84347085 + L1ME4a LINE L1 5962 6121 0 335 315 28 0 chr3 133691083 133691191 -84345967 - MIR SINE MIR -65 197 87 237 365 35 0 chr3 133691578 133691663 -84345495 - L2 LINE L2 -48 3224 3137 1557 155 30 33 chr3 133691686 133691989 -84345169 - AluJo SINE Alu -10 302 1 233 292 0 0 chr3 133692534 133692582 -84344576 - L2 LINE L2 -19 3294 3247 517 254 99 35 chr3 133693035 133693318 -84343840 + L1ME4a LINE L1 5598 5898 -223 307 271 86 43 chr3 133693412 133693552 -84343606 - MIR SINE MIR -108 154 9 204 273 317 25 chr3 133693835 133693996 -84343162 - MIR SINE MIR -34 228 21 404 215 41 103 chr3 133694774 133694969 -84342189 + MER106A DNA MER1_type 2 184 -52 1546 65 0 15 chr3 133694990 133695190 -84341968 + AluY SINE Alu 106 302 -9 2175 117 0 0 chr3 133696808 133697116 -84340042 + AluSx SINE Alu 1 308 -4 433 262 19 9 chr3 133697123 133697230 -84339928 - MIR3 SINE MIR -3 205 98 360 311 83 62 chr3 133697419 133697660 -84339498 - L2 LINE L2 -6 3266 3021 223 344 31 23 chr3 133698313 133698441 -84338717 - L3 LINE CR1 -1 1576 1448 216 254 17 17 chr3 133698455 133698514 -84338644 + L2 LINE L2 3254 3312 -1 292 310 117 0 chr3 133698700 133698845 -84338313 - MIR3 SINE MIR -10 198 37 261 283 82 84 chr3 133699769 133700186 -84336972 - L1ME LINE L1 -386 5735 5320 263 192 41 27 chr3 133700609 133700682 -84336476 - Charlie8 DNA MER1_type -6 2411 2338 332 298 160 9 chr3 133700802 133701027 -84336131 - Charlie8 DNA MER1_type -2141 276 18 375 254 29 51 chr3 133701027 133701165 -84335993 - HAL1 LINE L1 -125 2382 2248 1531 212 13 56 chr3 133701494 133701867 -84335291 - MLT1A1 LTR MaLR 0 365 9 5372 144 23 19 chr3 133704631 133706358 -84330800 - L1MA5A LINE L1 -1 6299 4625 21 0 0 0 chr3 133706642 133706663 -84330495 + AT_rich Low_complexity Low_complexity 1 21 0 497 171 18 0 chr3 133707143 133707254 -84329904 + GA-rich Low_complexity Low_complexity 1 113 0 629 149 0 0 chr3 133707277 133707371 -84329787 + AluJ/FLAM SINE Alu 2 95 -217 521 221 0 0 chr3 133707387 133707491 -84329667 - FRAM SINE Alu -7 169 66 680 251 148 9 chr3 133708743 133708966 -84328192 + MIR SINE MIR 5 258 -4 254 267 130 50 chr3 133709071 133709275 -84327883 - MIR SINE MIR -46 216 5 181 287 46 46 chr3 133709890 133709998 -84327160 + L3b LINE CR1 1300 1407 -176 391 284 201 14 chr3 133710199 133710424 -84326734 + MIR SINE MIR 3 262 0 307 232 239 7 chr3 133711512 133711654 -84325504 - MER5A DNA MER1_type -6 183 9 181 317 0 0 chr3 133711927 133711968 -84325190 + MER5A DNA MER1_type 149 189 0 183 294 31 92 chr3 133712554 133712689 -84324469 - MIR SINE MIR -56 206 81 356 206 228 0 chr3 133712689 133712781 -84324377 + MER81 DNA DNA 2 114 0 183 294 31 92 chr3 133712781 133712808 -84324350 - MIR SINE MIR -181 81 54 1076 244 116 5 chr3 133712824 133713226 -84323932 - L1ME3A LINE L1 -82 6080 5612 716 197 0 8 chr3 133714966 133715088 -84322070 + FLAM_A SINE Alu 1 121 -12 246 62 0 0 chr3 133715090 133715122 -84322036 + (CA)n Simple_repeat Simple_repeat 1 32 0 1819 160 0 3 chr3 133715525 133715825 -84321333 + AluJb SINE Alu 1 299 -13 1703 146 49 3 chr3 133715860 133716147 -84321011 + AluJb SINE Alu 1 300 -12 254 259 35 35 chr3 133716718 133716778 -84320380 - MIR3 SINE MIR -23 185 123 2198 89 0 19 chr3 133716778 133717092 -84320066 + AluY SINE Alu 1 308 -3 254 259 35 35 chr3 133717092 133717116 -84320042 - MIR3 SINE MIR -84 124 101 2188 105 7 0 chr3 133717538 133717834 -84319324 - AluSq SINE Alu -15 298 1 714 233 80 0 chr3 133717871 133718034 -84319124 - MER45A DNA AcHobo 0 178 3 857 246 72 17 chr3 133718336 133718572 -84318586 + MIR SINE MIR 3 251 -11 245 147 206 0 chr3 133718634 133718702 -84318456 - MIR SINE MIR -116 146 65 233 257 171 0 chr3 133720132 133720202 -84316956 - L1P3 LINE L1 -5233 642 561 348 225 63 9 chr3 133721207 133721318 -84315840 - L1ME4a LINE L1 -46 6075 5959 580 219 34 79 chr3 133722562 133722740 -84314418 + MIR SINE MIR 74 243 -19 797 257 84 5 chr3 133722776 133722978 -84314180 - MIR SINE MIR -29 233 16 2412 63 3 0 chr3 133723102 133723401 -84313757 - AluY SINE Alu -11 300 1 774 144 0 0 chr3 133723438 133723549 -84313609 - AluSg/x SINE Alu -8 301 191 1443 172 4 29 chr3 133724583 133724862 -84312296 - AluJo SINE Alu -11 301 30 24 32 0 0 chr3 133725476 133725507 -84311651 + AT_rich Low_complexity Low_complexity 1 31 0 329 297 0 45 chr3 133725796 133725907 -84311251 - MER81 DNA DNA -2 112 7 309 153 17 0 chr3 133726586 133726645 -84310513 - MIR SINE MIR -83 125 66 596 147 92 0 chr3 133727994 133728103 -84309055 - MIR3 SINE MIR -8 200 82 23 0 0 0 chr3 133728809 133728832 -84308326 + AT_rich Low_complexity Low_complexity 1 23 0 3416 112 40 25 chr3 133730055 133730574 -84306584 + MER1A DNA MER1_type 1 527 0 240 35 0 0 chr3 133730631 133730660 -84306498 + (CAT)n Simple_repeat Simple_repeat 1 29 0 347 244 53 12 chr3 133731485 133731622 -84305536 + MLT1J2 LTR MaLR 54 192 -217 543 246 0 0 chr3 133731669 133731783 -84305375 + MLT1I LTR MaLR 288 401 -8 250 222 0 0 chr3 133731798 133731810 -84305348 + MER3 DNA MER1_type 37 48 -161 704 186 16 0 chr3 133731810 133731939 -84305219 - MER3 DNA MER1_type -1 208 78 796 135 0 53 chr3 133732117 133732250 -84304908 + FLAM_C SINE Alu 1 126 -7 2378 80 0 19 chr3 133732291 133732605 -84304553 + AluY SINE Alu 1 308 -3 2335 104 7 0 chr3 133733052 133733350 -84303808 - AluSq SINE Alu -13 300 1 708 233 80 0 chr3 133733387 133733550 -84303608 - MER45A DNA AcHobo 0 178 3 763 237 76 21 chr3 133733852 133734088 -84303070 + MIR SINE MIR 3 251 -11 211 147 206 0 chr3 133734150 133734218 -84302940 - MIR SINE MIR -116 146 65 336 234 63 9 chr3 133736745 133736856 -84300302 - L1ME4a LINE L1 -46 6075 5959 501 219 34 79 chr3 133738100 133738278 -84298880 + MIR SINE MIR 74 243 -19 713 257 84 5 chr3 133738314 133738516 -84298642 - MIR SINE MIR -29 233 16 2534 67 3 0 chr3 133738640 133738939 -84298219 - AluY SINE Alu -11 300 1 755 153 0 0 chr3 133738976 133739087 -84298071 - AluSg/x SINE Alu -8 304 194 1525 170 4 29 chr3 133740121 133740398 -84296760 - AluJo SINE Alu -13 299 30 24 32 0 0 chr3 133741012 133741043 -84296115 + AT_rich Low_complexity Low_complexity 1 31 0 288 270 18 63 chr3 133741332 133741443 -84295715 - MER81 DNA DNA -2 112 7 282 153 17 0 chr3 133742120 133742179 -84294979 - MIR SINE MIR -83 125 66 494 140 112 0 chr3 133743528 133743635 -84293523 - MIR3 SINE MIR -8 200 82 22 0 0 0 chr3 133744328 133744350 -84292808 + AT_rich Low_complexity Low_complexity 1 22 0 197 296 99 42 chr3 133746207 133746349 -84290809 + MIR SINE MIR 56 205 -57 1983 144 155 0 chr3 133747516 133747883 -84289275 - MSTB LTR MaLR -2 424 1 230 290 47 18 chr3 133747943 133748112 -84289046 + (TATATG)n Simple_repeat Simple_repeat 4 177 0 529 197 124 0 chr3 133748294 133748431 -84288727 - L1MB7 LINE L1 -13 6171 6018 1919 180 0 0 chr3 133748497 133748802 -84288356 + AluJb SINE Alu 1 305 -7 2270 112 0 3 chr3 133748812 133749117 -84288041 + AluSx SINE Alu 1 304 -8 579 132 143 0 chr3 133749210 133749301 -84287857 - AluSg SINE Alu -205 105 2 1899 136 3 31 chr3 133749336 133749622 -84287536 + AluJo SINE Alu 5 282 -30 871 194 12 12 chr3 133749657 133749817 -84287341 + FRAM SINE Alu 2 161 -5 196 149 43 0 chr3 133751965 133752012 -84285146 + (TG)n Simple_repeat Simple_repeat 2 50 0 3427 110 40 25 chr3 133752403 133752922 -84284236 + MER1A DNA MER1_type 1 527 0 294 29 0 0 chr3 133752979 133753014 -84284144 + (CAT)n Simple_repeat Simple_repeat 1 35 0 347 244 53 12 chr3 133753839 133753976 -84283182 + MLT1J2 LTR MaLR 54 192 -217 543 246 0 0 chr3 133754023 133754137 -84283021 + MLT1I LTR MaLR 288 401 -8 250 222 0 0 chr3 133754152 133754164 -84282994 + MER3 DNA MER1_type 37 48 -161 704 186 16 0 chr3 133754164 133754293 -84282865 - MER3 DNA MER1_type -1 208 78 796 135 0 53 chr3 133754471 133754604 -84282554 + FLAM_C SINE Alu 1 126 -7 2636 41 0 0 chr3 133754645 133754940 -84282218 + AluY SINE Alu 1 295 -16 271 275 12 0 chr3 133755921 133756001 -84281157 + MIR SINE MIR 114 194 -68 370 227 0 0 chr3 133756141 133756207 -84280951 - MER2 DNA MER2_type 0 345 280 2101 140 3 0 chr3 133756215 133756515 -84280643 + AluSx SINE Alu 1 301 -11 601 58 47 47 chr3 133756515 133756812 -84280346 + (TA)n Simple_repeat Simple_repeat 1 297 0 496 99 70 18 chr3 133756815 133756986 -84280172 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 461 106 43 19 chr3 133756997 133757158 -84280000 + (TATAA)n Simple_repeat Simple_repeat 5 169 0 1111 94 0 31 chr3 133757267 133757426 -84279732 - MER2 DNA MER2_type -172 173 20 499 47 0 0 chr3 133758047 133758111 -84279047 - L1PA4 LINE L1 -171 5984 5921 449 67 0 0 chr3 133758113 133758173 -84278985 + L1PA3 LINE L1 6093 6152 -3 246 274 88 60 chr3 133758179 133758394 -84278764 + HAL1 LINE L1 94 314 -2193 1505 158 19 90 chr3 133758626 133758949 -84278209 + AluJb SINE Alu 1 300 -12 2337 62 41 3 chr3 133759196 133759486 -84277672 - AluY SINE Alu -10 301 1 348 212 212 0 chr3 133759641 133759740 -84277418 + HAL1 LINE L1 18 137 -2370 1158 146 0 0 chr3 133759856 133760020 -84277138 + FRAM SINE Alu 1 164 -12 370 292 72 47 chr3 133760071 133760307 -84276851 + HAL1 LINE L1 377 618 -1889 538 153 59 0 chr3 133760314 133760399 -84276759 - MER45A DNA AcHobo 0 178 89 234 0 0 0 chr3 133760529 133760555 -84276603 + (T)n Simple_repeat Simple_repeat 1 26 0 497 195 0 0 chr3 133760556 133760643 -84276515 - MER45A DNA AcHobo -91 87 1 240 302 42 10 chr3 133760661 133760757 -84276401 + HAL1 LINE L1 637 735 -1772 874 142 60 0 chr3 133761040 133761174 -84275984 + FRAM SINE Alu 19 160 -16 1928 134 29 0 chr3 133761177 133761475 -84275683 + AluSx SINE Alu 1 306 0 865 178 57 6 chr3 133761753 133761910 -84275248 - FRAM SINE Alu -9 167 3 2126 130 19 0 chr3 133761915 133762223 -84274935 - LTR57 LTR ERVL -7 404 91 1715 144 15 4 chr3 133762626 133762889 -84274269 + AluJb SINE Alu 25 290 -22 2140 155 35 37 chr3 133763025 133763576 -84273582 - MLT2A2 LTR ERVL 0 554 1 821 256 160 11 chr3 133763733 133764096 -84273062 + HAL1 LINE L1 742 1158 -1349 1938 163 0 10 chr3 133764096 133764390 -84272768 + AluJb SINE Alu 1 291 -21 451 213 8 8 chr3 133764390 133764517 -84272641 + GA-rich Low_complexity Low_complexity 1 127 0 332 240 152 32 chr3 133764529 133764654 -84272504 + HAL1 LINE L1 1141 1280 -1227 700 222 66 17 chr3 133764688 133764985 -84272173 + Charlie1 DNA MER1_type 1 2722 -39 1671 158 0 0 chr3 133765293 133765546 -84271612 - AluJb SINE Alu -59 253 1 2174 139 3 0 chr3 133765752 133766061 -84271097 + AluJo SINE Alu 3 312 0 856 172 68 25 chr3 133766366 133766529 -84270629 + FRAM SINE Alu 1 169 -7 357 222 40 71 chr3 133766820 133766946 -84270212 + LTR40b LTR ERVL 135 256 -206 850 255 70 70 chr3 133767053 133767252 -84269906 - L1ME4a LINE L1 -286 5835 5637 760 176 7 37 chr3 133767252 133767388 -84269770 + FLAM_A SINE Alu 1 132 -1 850 255 70 70 chr3 133767388 133767658 -84269500 - L1ME4a LINE L1 -483 5638 5366 1695 174 38 14 chr3 133767978 133768266 -84268892 - AluJb SINE Alu -17 295 1 263 284 198 41 chr3 133768669 133768866 -84268292 + LTR67 LTR ERVL 9 236 -321 384 282 51 8 chr3 133769023 133769140 -84268018 + LTR67 LTR ERVL 428 549 -8 2125 244 93 6 chr3 133769954 133770751 -84266407 - L1ME3A LINE L1 -208 5962 5111 549 254 98 34 chr3 133770942 133771237 -84265921 + L1MEd LINE L1 561 874 -5245 * 2330 161 20 29 chr3 133771235 133771681 -84265477 + L1MC2 LINE L1 5664 6105 -239 1921 137 54 48 chr3 133771909 133772154 -84265004 + THE1C LTR MaLR 1 250 -125 2263 116 65 6 chr3 133772154 133772508 -84264650 - THE1C LTR MaLR 0 375 1 1921 137 54 48 chr3 133772508 133772635 -84264523 + THE1C LTR MaLR 250 375 0 10034 124 6 34 chr3 133772637 133774214 -84262944 + THE1C-int LTR MaLR 3 1534 -46 369 267 91 98 chr3 133774214 133774486 -84262672 - L2 LINE L2 -363 2951 2680 2177 147 31 0 chr3 133774486 133774813 -84262345 + MER1B DNA MER1_type 1 337 0 369 267 91 98 chr3 133774813 133774858 -84262300 - L2 LINE L2 -634 2680 2636 2247 118 0 0 chr3 133775108 133775404 -84261754 + AluSq SINE Alu 1 296 -17 587 96 24 0 chr3 133775511 133775593 -84261565 + LTR8A LTR ERV1 1 84 -643 544 139 200 61 chr3 133775593 133775758 -84261400 - MER4C LTR ERV1 0 465 278 2256 80 31 0 chr3 133775758 133776044 -84261114 - AluSg SINE Alu -15 295 1 2156 105 53 87 chr3 133776068 133776505 -84260653 - MER4A LTR ERV1 -242 422 1 * 2415 126 78 50 chr3 133776505 133776975 -84260183 + LTR8A LTR ERV1 81 563 -164 701 128 122 67 chr3 133777038 133777202 -84259956 + LTR8A LTR ERV1 555 727 0 790 271 195 19 chr3 133777204 133777240 -84259918 + L2 LINE L2 2198 2226 -1088 1941 123 131 33 chr3 133777240 133777638 -84259520 + LTR23 LTR ERV1 1 437 0 790 271 195 19 chr3 133777638 133777970 -84259188 + L2 LINE L2 2226 2631 -683 1594 157 93 13 chr3 133778015 133778327 -84258831 + MER1B DNA MER1_type 1 337 0 228 226 16 16 chr3 133779332 133779394 -84257764 + C-rich Low_complexity Low_complexity 3 64 0 204 299 13 0 chr3 133779452 133779529 -84257629 + (CGG)n Simple_repeat Simple_repeat 2 79 0 624 217 36 0 chr3 133780265 133780403 -84256755 + MIR3 SINE MIR 51 193 -15 246 148 33 33 chr3 133780496 133780557 -84256601 - L1MC5 LINE L1 -37 7924 7864 246 239 128 37 chr3 133780558 133780667 -84256491 - L1MC4a LINE L1 -1634 6174 6056 298 287 32 0 chr3 133780867 133780961 -84256197 - MIR SINE MIR -79 129 33 23 0 0 0 chr3 133781055 133781078 -84256080 + AT_rich Low_complexity Low_complexity 1 23 0 429 203 121 99 chr3 133782738 133782970 -84254188 - MLT1K LTR MaLR -1 587 351 1922 61 141 8 chr3 133783345 133783607 -84253551 + AluY SINE Alu 3 299 -2 1814 162 3 20 chr3 133783656 133783959 -84253199 - AluJo SINE Alu -14 298 1 1242 177 9 0 chr3 133783968 133784183 -84252975 - AluJb SINE Alu -11 301 85 612 140 0 0 chr3 133784264 133784357 -84252801 - Alu SINE Alu 0 311 219 235 346 65 0 chr3 133784470 133784577 -84252581 + MIR3 SINE MIR 74 187 -21 1745 144 13 70 chr3 133784848 133785161 -84251997 + AluJo SINE Alu 1 295 -17 1957 160 0 0 chr3 133785890 133786183 -84250975 + AluJo SINE Alu 1 293 -19 1749 145 114 23 chr3 133786207 133786594 -84250564 + L1MB7 LINE L1 5763 6184 0 2648 43 0 0 chr3 133786818 133787121 -84250037 - AluY SINE Alu -8 303 1 22 0 0 0 chr3 133788882 133788904 -84248254 + AT_rich Low_complexity Low_complexity 1 22 0 759 133 144 61 chr3 133788919 133789042 -84248116 + MER3 DNA MER1_type 2 146 -63 1795 148 10 42 chr3 133789042 133789353 -84247805 + AluJo SINE Alu 1 301 -11 759 133 144 61 chr3 133789353 133789410 -84247748 + MER3 DNA MER1_type 146 197 -12 24 32 0 0 chr3 133789777 133789808 -84247350 + AT_rich Low_complexity Low_complexity 1 31 0 245 327 92 7 chr3 133790375 133790518 -84246640 + MIR3 SINE MIR 43 197 -11 361 165 223 0 chr3 133791137 133791240 -84245918 - L1ME4a LINE L1 -18 6103 5978 1925 147 3 10 chr3 133791929 133792229 -84244929 - AluJo SINE Alu -12 300 3 314 289 34 2 chr3 133792365 133792512 -84244646 + MER20B DNA MER1_type 34 211 -572 2229 188 89 63 chr3 133792614 133793220 -84243938 - MLT1E3 LTR MaLR -1 623 2 348 24 0 0 chr3 133793496 133793537 -84243621 + (TG)n Simple_repeat Simple_repeat 2 42 0 773 146 168 22 chr3 133794101 133794327 -84242831 + MER20B DNA MER1_type 525 783 0 2379 97 0 3 chr3 133794412 133794722 -84242436 - AluSx SINE Alu -3 309 1 1868 139 14 3 chr3 133794766 133795054 -84242104 + AluJb SINE Alu 1 291 -21 224 305 106 13 chr3 133795477 133795611 -84241547 + MIR SINE MIR 45 188 -69 190 191 75 138 chr3 133797025 133797119 -84240039 + MIR SINE MIR 124 211 -51 278 150 200 0 chr3 133797559 133797619 -84239539 - AluJ/FRAM SINE Alu -1 301 230 1498 97 0 0 chr3 133797619 133797805 -84239353 - AluSx SINE Alu -126 186 1 1896 152 7 0 chr3 133797835 133798131 -84239027 + AluJo SINE Alu 1 298 -14 217 313 25 12 chr3 133798402 133798482 -84238676 - MIR SINE MIR -147 115 35 2110 177 34 8 chr3 133798765 133799121 -84238037 - MLT1A1 LTR MaLR 0 365 1 215 276 89 65 chr3 133799264 133799387 -84237771 - L2 LINE L2 -1 3271 3146 318 247 82 0 chr3 133799455 133799540 -84237618 + L2 LINE L2 3128 3219 -53 204 343 146 27 chr3 133799548 133800248 -84236910 + L2 LINE L2 1572 2354 -960 304 157 294 113 chr3 133800519 133800632 -84236526 - MIR SINE MIR 0 262 171 828 88 103 7 chr3 133800632 133800738 -84236420 + L1MA8 LINE L1 6143 6266 -25 216 0 0 0 chr3 133800738 133800762 -84236396 + (TG)n Simple_repeat Simple_repeat 2 25 0 828 88 103 7 chr3 133800762 133800791 -84236367 + L1MA8 LINE L1 6266 6291 0 304 157 294 113 chr3 133800791 133800881 -84236277 - MIR SINE MIR -91 171 22 214 340 106 45 chr3 133800977 133801356 -84235802 + L2 LINE L2 2857 3258 -14 633 225 130 56 chr3 133801623 133801854 -84235304 + MIR SINE MIR 15 262 0 215 309 0 25 chr3 133902587 133902668 -84134490 + CT-rich Low_complexity Low_complexity 3 81 0 1235 241 103 28 chr3 133904343 133904966 -84132192 + L1M4c LINE L1 2 1941 -5089 760 217 50 74 chr3 133904948 133905344 -84131814 + L1M4c LINE L1 2932 3333 -3773 * 436 328 79 5 chr3 133906141 133906330 -84130828 + MIR SINE MIR 17 219 -43 322 360 27 0 chr3 133906380 133906491 -84130667 + L2 LINE L2 3137 3250 -22 307 279 163 12 chr3 133906790 133906962 -84130196 - MIR SINE MIR -26 236 39 386 356 0 15 chr3 133907901 133908036 -84129122 + MIR SINE MIR 20 152 -56 699 329 20 12 chr3 133908052 133908301 -84128857 - MIR SINE MIR -10 252 2 1887 248 33 33 chr3 133909770 133910351 -84126807 - L1ME1 LINE L1 -271 5895 5315 1172 182 86 0 chr3 133910395 133910615 -84126543 + Tigger7 DNA MER2_type 29 267 -466 580 175 10 0 chr3 133910613 133910710 -84126448 + Tigger7 DNA MER2_type 2389 2486 -1 * 844 248 52 16 chr3 133910711 133910961 -84126197 - L1ME1 LINE L1 -874 5272 5014 986 196 14 27 chr3 133911110 133911330 -84125828 + MER49 LTR ERV1 423 639 -284 443 174 0 11 chr3 133911399 133911491 -84125667 + CT-rich Low_complexity Low_complexity 3 93 0 1338 130 127 20 chr3 133911502 133911755 -84125403 + MER49 LTR ERV1 635 914 -9 224 356 50 0 chr3 133911768 133911869 -84125289 - L2 LINE L2 -16 3256 3151 371 179 253 0 chr3 133912632 133912727 -84124431 + MER5A DNA MER1_type 41 159 -30 298 219 175 25 chr3 133912634 133912765 -84124393 - MER5A DNA MER1_type -31 158 4 * 301 253 0 0 chr3 133912782 133912850 -84124308 - MER5B DNA MER1_type -6 172 113 197 248 30 59 chr3 133913157 133913258 -84123900 - MER5A DNA MER1_type -45 144 47 592 242 11 88 chr3 133913629 133913889 -84123269 + L2 LINE L2 3074 3313 0 269 339 9 26 chr3 133914017 133914132 -84123026 - MIR SINE MIR -130 132 20 414 248 26 34 chr3 133914250 133914367 -84122791 - MIR SINE MIR -106 156 41 215 310 35 0 chr3 133914412 133914470 -84122688 - L2 LINE L2 -5 3267 3208 2300 144 73 7 chr3 133914616 133915040 -84122118 + L1PA13 LINE L1 5710 6161 -2 180 304 333 17 chr3 133915200 133915440 -84121718 - L2 LINE L2 -424 2890 2575 742 148 16 0 chr3 133916048 133916170 -84120988 - FLAM_C SINE Alu -5 128 5 22 0 0 0 chr3 133916173 133916195 -84120963 + AT_rich Low_complexity Low_complexity 1 22 0 268 368 50 67 chr3 133916950 133917292 -84119866 + L2 LINE L2 2924 3259 -13 286 178 34 20 chr3 133917374 133917480 -84119678 - L1ME1 LINE L1 -5 6161 6051 571 276 33 11 chr3 133918928 133919109 -84118049 - MER5A DNA MER1_type -4 185 1 259 172 35 17 chr3 133919120 133919178 -84117980 - MER5A DNA MER1_type -3 186 128 2171 143 32 3 chr3 133919180 133919551 -84117607 + L1PA6 LINE L1 5647 6028 -126 4226 168 18 10 chr3 133919658 133920907 -84116251 - L1MA5 LINE L1 -322 5978 4711 826 255 97 3 chr3 133920900 133921241 -84115917 - L1MEc LINE L1 -3167 3048 2676 * 336 352 62 17 chr3 133921354 133921533 -84115625 - MIR SINE MIR -66 196 10 196 197 61 91 chr3 133921586 133921652 -84115506 + L2 LINE L2 3200 3263 -9 1714 291 37 13 chr3 133921837 133922379 -84114779 - MLT1H1 LTR MaLR 0 555 1 1449 160 22 26 chr3 133922751 133923019 -84114139 - MER49 LTR ERV1 -656 267 1 389 234 97 83 chr3 133923876 133924307 -84112851 - L1ME4a LINE L1 -6 6115 5679 1467 265 104 35 chr3 133924439 133925654 -84111504 - L1MEc LINE L1 -3609 2606 1352 509 280 0 5 chr3 133925668 133925861 -84111297 - L1MEc LINE L1 -5205 1191 1000 511 260 7 65 chr3 133926218 133926372 -84110786 + MIR3 SINE MIR 30 174 -34 4788 152 38 14 chr3 133926505 133927350 -84109808 + MER6 DNA MER2_type 1 865 0 288 254 0 0 chr3 133927576 133927710 -84109448 + C-rich Low_complexity Low_complexity 1 134 0 217 235 0 69 chr3 133927749 133927851 -84109307 + C-rich Low_complexity Low_complexity 3 97 0 * 242 277 36 36 chr3 133927783 133927949 -84109209 + (CCCCG)n Simple_repeat Simple_repeat 1 166 0 1987 92 48 4 chr3 133928105 133928378 -84108780 - AluSc SINE Alu -23 286 2 1197 105 0 0 chr3 133928379 133928531 -84108627 - AluSc SINE Alu -157 152 1 183 205 0 0 chr3 133930203 133930242 -84106916 + GA-rich Low_complexity Low_complexity 3 41 0 528 184 48 56 chr3 133930722 133930847 -84106311 - MLT1A1 LTR MaLR -241 124 1 2788 164 17 2 chr3 133931532 133932061 -84105097 - L1MA9 LINE L1 0 6312 5776 243 88 0 0 chr3 133932071 133932105 -84105053 + (TG)n Simple_repeat Simple_repeat 2 35 0 533 112 20 31 chr3 133932130 133932228 -84104930 - L1PB4 LINE L1 -13 6143 6047 256 170 57 0 chr3 133932230 133932283 -84104875 + Charlie3 DNA MER1_type 1 56 -2654 6342 55 16 0 chr3 133932420 133933817 -84103341 + L1PA5 LINE L1 4661 6075 -79 1600 245 90 2 chr3 133933938 133934664 -84102494 - MER63C DNA MER1_type -54 876 2 509 230 88 95 chr3 133935332 133935584 -84101574 - L1MEc LINE L1 -4868 1739 1348 728 211 0 0 chr3 133935584 133935712 -84101446 - FLAM_C SINE Alu -5 128 1 509 230 88 95 chr3 133935712 133935750 -84101408 - L1MEc LINE L1 -5259 1348 1311 362 325 50 8 chr3 133935756 133936140 -84101018 - L1MEc LINE L1 -4982 1434 1035 463 241 9 26 chr3 133936453 133936569 -84100589 + MER58A DNA MER1_type 4 117 0 531 325 43 30 chr3 133937115 133937346 -84099812 - MIR SINE MIR -6 256 23 216 301 36 12 chr3 133937451 133937534 -84099624 + MIR SINE MIR 58 142 -66 622 246 72 12 chr3 133938668 133938835 -84098323 + MIR SINE MIR 58 234 -28 5052 133 35 16 chr3 133940281 133941416 -84095742 - L1PB2 LINE L1 -35 6116 4951 853 129 14 0 chr3 133941536 133941683 -84095475 - THE1C-int LTR MaLR -1430 150 2 2336 114 21 26 chr3 133941684 133942061 -84095097 - THE1C LTR MaLR 0 375 1 678 172 86 13 chr3 133942063 133942214 -84094944 + MER2 DNA MER2_type 182 343 -2 929 167 15 5 chr3 133942214 133942418 -84094740 + L1MA9 LINE L1 6106 6311 -1 284 301 70 26 chr3 133942430 133942586 -84094572 - Charlie8 DNA MER1_type -2180 237 75 1083 194 0 5 chr3 133942932 133943118 -84094040 + AluSg/x SINE Alu 125 309 -3 22 94 0 0 chr3 133944897 133944961 -84092197 + AT_rich Low_complexity Low_complexity 1 64 0 826 309 59 16 chr3 133945632 133945939 -84091219 + L3 LINE CR1 1245 1564 -13 292 245 82 41 chr3 133946375 133946473 -84090685 - MLT1I LTR MaLR -154 255 154 500 200 25 0 chr3 133946880 133947000 -84090158 - L1MD3 LINE L1 -25 7970 7848 538 128 0 0 chr3 133947001 133947087 -84090071 - L1MD3 LINE L1 -180 7815 7730 270 268 158 0 chr3 133947357 133947521 -84089637 - L1ME2 LINE L1 -262 5902 5713 393 278 73 28 chr3 133947689 133947977 -84089181 - L1ME2 LINE L1 -1559 4587 4287 1298 204 76 27 chr3 133947993 133948321 -84088837 - MER2 DNA MER2_type 0 344 1 670 306 81 31 chr3 133948401 133949239 -84087919 - L1ME2 LINE L1 -1988 4158 3279 528 312 26 79 chr3 133949513 133949933 -84087225 + MLT1J LTR MaLR 95 492 -19 1725 179 7 0 chr3 133949995 133950274 -84086884 - AluJb SINE Alu -31 281 1 248 174 0 0 chr3 133950310 133950356 -84086802 - L1ME2 LINE L1 -3126 3020 2975 407 208 10 10 chr3 133950403 133950499 -84086659 + MLT1J LTR MaLR 454 549 0 17564 39 10 1 chr3 133950748 133953688 -84083470 - L1PA5 LINE L1 -4 6150 3191 225 370 0 0 chr3 133953724 133953832 -84083326 + MLT1H-int LTR MaLR 437 544 -827 252 274 14 0 chr3 133954178 133954251 -84082907 + MLT1H-int LTR MaLR 786 859 -512 272 275 89 73 chr3 133954475 133954788 -84082370 + MLT1H-int LTR MaLR 1387 1704 -31 791 267 72 55 chr3 133954809 133955265 -84081893 + MLT1H LTR MaLR 3 511 -38 23 0 0 0 chr3 133955467 133955490 -84081668 + AT_rich Low_complexity Low_complexity 1 23 0 836 174 61 20 chr3 133955571 133955767 -84081391 + L1PA16 LINE L1 5963 6166 0 414 289 165 0 chr3 133955830 133956024 -84081134 - HAL1 LINE L1 -872 1635 1410 483 307 33 29 chr3 133956114 133956420 -84080738 - L1MEd LINE L1 -4894 1225 919 233 226 0 0 chr3 133956449 133956502 -84080656 - AluJ/monomer SINE Alu 0 302 250 894 178 0 35 chr3 133956502 133956671 -84080487 + FRAM SINE Alu 1 40 0 276 255 164 28 chr3 133957515 133957718 -84079440 - MIR SINE MIR 0 262 30 7902 16 0 0 chr3 133957778 133958807 -84078351 + L1PA3 LINE L1 5127 6155 0 1981 131 63 102 chr3 133959383 133959826 -84077332 - MSTC LTR MaLR -2 426 1 341 299 122 5 chr3 133960625 133960822 -84076336 + L1ME LINE L1 5257 5476 -2332 424 277 21 7 chr3 133961012 133961153 -84076005 + MARNA DNA Mariner 400 542 -44 2363 97 0 0 chr3 133961845 133962156 -84075002 + AluY SINE Alu 1 311 0 385 318 104 5 chr3 133962277 133962488 -84074670 + MIR SINE MIR 31 262 0 541 230 123 29 chr3 133963360 133963564 -84073594 - MIR SINE MIR -38 224 2 609 194 129 0 chr3 133963989 133964128 -84073030 + MIR SINE MIR 5 161 -101 3356 212 63 17 chr3 133964142 133965350 -84071808 + L1ME2 LINE L1 4898 6154 -10 245 263 44 9 chr3 133965500 133965614 -84071544 + L1MC4 LINE L1 7924 8041 -1 1441 156 67 4 chr3 133965647 133965872 -84071286 + AluJo SINE Alu 29 267 -45 261 262 151 71 chr3 133966503 133966629 -84070529 - L2 LINE L2 0 3272 3137 1944 188 184 18 chr3 133966727 133967233 -84069925 + MLT1G LTR MaLR 1 590 0 606 239 141 43 chr3 133967380 133967656 -84069502 - L2 LINE L2 -1 3312 3010 296 247 24 12 chr3 133967804 133967889 -84069269 - MIR3 SINE MIR -6 202 117 1576 176 27 122 chr3 133968256 133968772 -84068386 + MLT1C LTR MaLR 1 467 0 415 249 36 62 chr3 133969170 133969395 -84067763 + L1ME LINE L1 5520 5738 -383 630 233 133 43 chr3 133969427 133969637 -84067521 - MIR SINE MIR 0 262 34 252 306 92 20 chr3 133969648 133969746 -84067412 + MIR SINE MIR 86 190 -72 557 274 45 8 chr3 133970706 133970883 -84066275 - MIR SINE MIR -58 150 2 329 207 35 35 chr3 133971557 133971644 -84065514 + L1M4 LINE L1 3796 3882 -2264 1096 215 4 26 chr3 133971646 133971874 -84065284 + MER58A DNA MER1_type 2 224 0 1763 234 86 6 chr3 133972223 133972877 -84064281 + L1ME1 LINE L1 3025 3730 -2416 41210 28 21 1 chr3 133972877 133978907 -84058251 + L1HS LINE L1 2 6155 0 622 217 31 19 chr3 133978917 133979078 -84058080 + L1ME1 LINE L1 3717 3879 -2267 665 167 11 44 chr3 133979101 133979327 -84057831 + MER58A DNA MER1_type 9 195 -29 2308 228 53 40 chr3 133979350 133980053 -84057105 - MER21B LTR ERV1 -54 809 98 394 230 0 0 chr3 133980111 133980185 -84056973 - MER21B LTR ERV1 -777 86 13 1498 227 31 18 chr3 133980231 133980681 -84056477 + L1ME1 LINE L1 3872 4327 -1819 3661 216 33 27 chr3 133980884 133982712 -84054446 + L1ME1 LINE L1 4318 6154 -12 300 130 19 0 chr3 133982738 133982792 -84054366 + HsTC2 DNA Tc2 239 293 -1605 508 343 58 15 chr3 133982801 133983128 -84054030 + HsTC2 DNA Tc2 493 833 -1065 295 272 19 56 chr3 133983146 133983308 -84053850 + L1M4 LINE L1 3684 3839 -2307 237 163 0 0 chr3 133983308 133983351 -84053807 + HsTC2 DNA Tc2 819 861 -1037 332 238 107 71 chr3 133983717 133983885 -84053273 - MER5A DNA MER1_type -9 180 7 196 300 181 21 chr3 133984166 133984409 -84052749 - L2 LINE L2 -341 2973 2692 230 272 105 18 chr3 133985114 133985228 -84051930 - L2 LINE L2 -3 3269 3146 2109 121 7 0 chr3 133985747 133986037 -84051121 - AluSq SINE Alu -21 292 1 2279 82 0 60 chr3 133986674 133987005 -84050153 - AluY SINE Alu 0 311 1 293 234 22 69 chr3 133987168 133987313 -84049845 - MIR3 SINE MIR -46 162 21 1646 145 33 7 chr3 133989191 133989467 -84047691 + AluJb SINE Alu 1 283 -29 28 61 0 0 chr3 133991270 133991319 -84045839 + GC_rich Low_complexity Low_complexity 1 49 0 330 67 0 0 chr3 133991397 133991442 -84045716 + (CGGGG)n Simple_repeat Simple_repeat 1 45 0 205 295 13 0 chr3 133991442 133991520 -84045638 + (CGAG)n Simple_repeat Simple_repeat 4 82 0 289 318 37 0 chr3 133991790 133991897 -84045261 + MIR SINE MIR 43 153 -55 843 241 90 23 chr3 133992132 133992431 -84044727 - LTR40b LTR ERVL 0 462 144 1259 151 4 22 chr3 133992629 133992854 -84044304 + AluJo SINE Alu 85 305 -7 1036 188 0 6 chr3 133993329 133993505 -84043653 + FAM SINE Alu 1 175 0 351 291 64 0 chr3 133993706 133993816 -84043342 - MIR SINE MIR -79 183 67 373 244 31 55 chr3 133995467 133995594 -84041564 + L2 LINE L2 3189 3312 -1 265 273 79 43 chr3 133995712 133995851 -84041307 - L1MCa LINE L1 -3367 3059 2916 323 247 129 6 chr3 133996026 133996204 -84040954 - L1MCa LINE L1 -3733 2693 2494 251 194 0 0 chr3 133996261 133996323 -84040835 - L1MCa LINE L1 -3961 2465 2404 348 346 34 5 chr3 133997056 133997264 -84039894 - L3 LINE CR1 -24 1553 1340 902 243 52 23 chr3 133997466 133997775 -84039383 - L1MEc LINE L1 -2196 4019 3702 4285 243 45 28 chr3 133997782 133999201 -84037957 - L1MEc LINE L1 -2687 3528 2085 2200 131 3 0 chr3 133999201 133999507 -84037651 - AluSx SINE Alu -5 307 1 4285 243 45 28 chr3 133999507 134000525 -84036633 - L1MEc LINE L1 -4130 2085 1086 1026 167 36 31 chr3 134000549 134000771 -84036387 + L1MB8 LINE L1 5946 6168 -10 302 89 78 0 chr3 134000771 134000861 -84036297 + (TA)n Simple_repeat Simple_repeat 1 97 0 2184 96 31 0 chr3 134000989 134001280 -84035878 + AluSq SINE Alu 1 300 -13 435 202 50 25 chr3 134001824 134001943 -84035215 + L1MC4a LINE L1 5840 5961 -1847 4170 98 39 20 chr3 134002080 134002721 -84034437 - MER39B LTR ERV1 0 653 1 1195 123 56 0 chr3 134003032 134003211 -84033947 - MER5A DNA MER1_type 0 189 1 2033 127 3 7 chr3 134003974 134004257 -84032901 + AluSx SINE Alu 1 282 -30 235 0 57 0 chr3 134004261 134004296 -84032862 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1530 212 13 56 chr3 134005434 134005807 -84031351 - MLT1A1 LTR MaLR 0 365 9 28 0 0 0 chr3 134008556 134008584 -84028574 + AT_rich Low_complexity Low_complexity 1 28 0 6723 130 35 5 chr3 134008584 134010569 -84026589 - L1MA5A LINE L1 -10 6929 4883 495 0 0 0 chr3 134010569 134010624 -84026534 + (TA)n Simple_repeat Simple_repeat 1 55 0 6723 130 35 5 chr3 134010624 134010636 -84026522 - L1MA5A LINE L1 -2056 4883 4873 * 8057 168 116 99 chr3 134010632 134013055 -84024103 - L1MA5A LINE L1 -4219 2570 107 1941 172 13 0 chr3 134013150 134013452 -84023706 - AluJo SINE Alu -6 306 1 1403 257 175 30 chr3 134013843 134013929 -84023229 - L2 LINE L2 -86 3227 3155 2320 114 0 0 chr3 134013929 134014237 -84022921 + AluSq SINE Alu 1 308 -5 1403 257 175 30 chr3 134014237 134015228 -84021930 - L2 LINE L2 -158 3155 1969 2182 178 28 8 chr3 134016075 134016463 -84020695 - MSTD LTR MaLR 0 396 1 27 0 0 0 chr3 134017145 134017172 -84019986 + AT_rich Low_complexity Low_complexity 1 27 0 2040 142 0 16 chr3 134017290 134017593 -84019565 + AluSx SINE Alu 1 298 -14 207 146 0 0 chr3 134017602 134017643 -84019515 + (GGAA)n Simple_repeat Simple_repeat 4 44 0 451 235 123 29 chr3 134018629 134018833 -84018325 - MIR SINE MIR -38 224 2 559 194 129 0 chr3 134019258 134019397 -84017761 + MIR SINE MIR 5 161 -101 3671 210 56 17 chr3 134019411 134020619 -84016539 + L1ME2 LINE L1 4898 6154 -10 282 260 41 16 chr3 134020760 134020883 -84016275 + L1MC4 LINE L1 7916 8041 -1 1444 156 67 4 chr3 134020916 134021141 -84016017 + AluJo SINE Alu 29 267 -45 219 260 154 58 chr3 134021772 134021876 -84015282 - L2 LINE L2 0 3272 3159 2031 184 184 18 chr3 134021996 134022502 -84014656 + MLT1G LTR MaLR 1 590 0 512 239 141 43 chr3 134022649 134022925 -84014233 - L2 LINE L2 -1 3312 3010 274 247 24 12 chr3 134023073 134023158 -84014000 - MIR3 SINE MIR -6 202 117 1657 177 27 120 chr3 134023525 134024040 -84013118 + MLT1C LTR MaLR 1 467 0 490 253 42 58 chr3 134024438 134024679 -84012479 + L1ME LINE L1 5520 5756 -365 553 233 133 43 chr3 134024695 134024905 -84012253 - MIR SINE MIR 0 262 34 222 306 92 20 chr3 134024916 134025014 -84012144 + MIR SINE MIR 86 190 -72 502 296 40 3 chr3 134025974 134026151 -84011007 - MIR SINE MIR -58 150 2 361 214 34 34 chr3 134026823 134026912 -84010246 + L1M4 LINE L1 3794 3882 -2264 1122 215 4 26 chr3 134026914 134027142 -84010016 + MER58A DNA MER1_type 2 224 0 2616 231 76 9 chr3 134027491 134028292 -84008866 + L1ME1 LINE L1 3025 3879 -2267 725 162 11 44 chr3 134028315 134028541 -84008617 + MER58A DNA MER1_type 9 195 -29 2583 226 53 40 chr3 134028564 134029267 -84007891 - MER21B LTR ERV1 -54 809 98 417 202 0 96 chr3 134029305 134029399 -84007759 - MER21B LTR ERV1 -766 97 13 1643 218 33 20 chr3 134029445 134029895 -84007263 + L1ME1 LINE L1 3872 4327 -1819 4008 216 33 27 chr3 134030098 134031926 -84005232 + L1ME1 LINE L1 4318 6154 -12 316 153 17 0 chr3 134031947 134032006 -84005152 + HsTC2 DNA Tc2 234 293 -1605 * 605 339 66 14 chr3 134031994 134032342 -84004816 + HsTC2 DNA Tc2 468 833 -1065 342 272 19 56 chr3 134032360 134032522 -84004636 + L1M4 LINE L1 3684 3839 -2307 255 266 16 0 chr3 134032522 134032586 -84004572 + HsTC2 DNA Tc2 819 883 -1015 256 247 104 71 chr3 134032945 134033099 -84004059 - MER5A DNA MER1_type -24 165 7 264 272 105 18 chr3 134034328 134034442 -84002716 - L2 LINE L2 -3 3269 3146 2109 121 7 0 chr3 134034961 134035251 -84001907 - AluSq SINE Alu -21 292 1 2236 85 0 60 chr3 134035888 134036219 -84000939 - AluY SINE Alu 0 311 1 334 234 22 69 chr3 134036382 134036527 -84000631 - MIR3 SINE MIR -46 162 21 1856 135 30 3 chr3 134038405 134038702 -83998456 + AluJb SINE Alu 1 305 -7 28 61 0 0 chr3 134040483 134040532 -83996626 + GC_rich Low_complexity Low_complexity 1 49 0 285 75 0 0 chr3 134040610 134040650 -83996508 + (CGGGG)n Simple_repeat Simple_repeat 1 40 0 205 295 13 0 chr3 134040650 134040728 -83996430 + (CGAG)n Simple_repeat Simple_repeat 4 82 0 318 318 37 0 chr3 134040998 134041105 -83996053 + MIR SINE MIR 43 153 -55 185 105 0 53 chr3 134041276 134041314 -83995844 + (AGGGGG)n Simple_repeat Simple_repeat 1 36 0 580 197 18 114 chr3 134041443 134041671 -83995487 - L1ME3A LINE L1 0 6170 5965 2123 173 86 136 chr3 134041742 134042580 -83994578 - L1MC5 LINE L1 -438 7523 6728 371 121 30 0 chr3 134042581 134042647 -83994511 + CT-rich Low_complexity Low_complexity 4 71 0 2320 111 0 0 chr3 134042654 134042961 -83994197 - AluSc SINE Alu -2 307 1 436 269 59 8 chr3 134042961 134043072 -83994086 - L1MC4 LINE L1 -1215 6827 6708 251 270 21 66 chr3 134043530 134043709 -83993449 - HAL1b LINE L1 -678 1722 496 913 173 11 78 chr3 134043709 134043900 -83993258 - MLT1A1 LTR MaLR 0 365 188 242 274 73 73 chr3 134043900 134044268 -83992890 - HAL1b LINE L1 -979 369 2 21 0 0 0 chr3 134044332 134044353 -83992805 + AT_rich Low_complexity Low_complexity 1 21 0 2010 144 168 29 chr3 134044766 134045140 -83992018 - MSTA LTR MaLR 0 428 3 7081 133 12 30 chr3 134045142 134045393 -83991765 - MSTA-int LTR MaLR 0 1580 1326 1902 149 3 10 chr3 134045393 134045689 -83991469 + AluSx SINE Alu 1 294 -18 7081 133 12 30 chr3 134045689 134046169 -83990989 - MSTA-int LTR MaLR -254 1326 839 2322 131 42 25 chr3 134046169 134046527 -83990631 - THE1B LTR MaLR 0 364 1 13198 78 3 0 chr3 134046527 134048102 -83989056 - THE1B-int LTR MaLR 0 1580 1 2357 96 44 49 chr3 134048102 134048468 -83988690 - THE1B LTR MaLR 0 364 1 7081 133 12 30 chr3 134048468 134048881 -83988277 - MSTA-int LTR MaLR -738 842 454 607 104 163 3 chr3 134048881 134048997 -83988161 - MSTA LTR MaLR -225 139 1 4089 182 52 18 chr3 134049028 134049078 -83988080 - L1MB4 LINE L1 0 6180 6133 1975 138 0 7 chr3 134049078 134049369 -83987789 - AluSc SINE Alu -20 289 1 4089 182 52 18 chr3 134049369 134051066 -83986092 - L1MB4 LINE L1 -47 6133 4298 23 0 0 0 chr3 134051566 134051589 -83985569 + AT_rich Low_complexity Low_complexity 1 23 0 642 265 60 6 chr3 134051741 134051786 -83985372 - MER5B DNA MER1_type -3 175 134 294 29 0 0 chr3 134051786 134051821 -83985337 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 642 265 60 6 chr3 134051821 134051941 -83985217 - MER5B DNA MER1_type -44 134 1 3156 128 6 20 chr3 134052051 134052323 -83984835 + L1MA8 LINE L1 5509 5772 -519 2362 124 151 0 chr3 134052323 134052695 -83984463 + MSTC LTR MaLR 1 428 0 3156 128 6 20 chr3 134052695 134052921 -83984237 + L1MA8 LINE L1 5772 6000 -291 202 354 0 15 chr3 134053307 134053372 -83983786 - MIR SINE MIR -170 92 29 23 68 0 0 chr3 134053601 134053645 -83983513 + AT_rich Low_complexity Low_complexity 1 44 0 529 288 0 74 chr3 134054400 134054615 -83982543 + MIR SINE MIR 64 262 0 1642 134 0 113 chr3 134054958 134055287 -83981871 - AluSg SINE Alu -16 294 3 207 331 259 7 chr3 134055572 134056019 -83981139 + L2 LINE L2 2154 2713 -601 293 349 109 26 chr3 134056182 134056411 -83980747 + L2 LINE L2 3017 3264 -8 204 335 101 67 chr3 134056689 134056898 -83980260 - L3b LINE CR1 -39 1544 1329 260 292 84 55 chr3 134056902 134057221 -83979937 + L1MC4a LINE L1 4385 4693 -1453 2205 123 7 0 chr3 134057221 134057530 -83979628 + AluSq SINE Alu 1 311 -2 260 292 84 55 chr3 134057530 134057864 -83979294 + L1MC4a LINE L1 4693 5057 -1089 250 244 37 55 chr3 134058051 134058268 -83978890 + L1MC4a LINE L1 5267 5479 -880 2889 197 111 53 chr3 134058290 134059085 -83978073 + L1MC5 LINE L1 6879 7745 -216 2332 58 4 0 chr3 134059085 134059360 -83977798 - L1PA8 LINE L1 -14 6158 5883 2889 197 111 53 chr3 134059360 134059553 -83977605 + L1MC5 LINE L1 7745 7925 -36 342 0 0 0 chr3 134059567 134059605 -83977553 + (CA)n Simple_repeat Simple_repeat 2 39 0 514 271 70 28 chr3 134059629 134059884 -83977274 + L1MC4a LINE L1 5495 5762 -408 250 288 98 15 chr3 134060206 134060338 -83976820 + LTR67 LTR ERVL 402 544 -13 270 270 11 106 chr3 134060342 134060531 -83976627 + L1MC4a LINE L1 5762 5932 -1876 666 268 160 19 chr3 134060878 134061303 -83975855 + L1M4 LINE L1 4358 4842 -1304 349 295 101 40 chr3 134062170 134062310 -83974848 + L1MEd LINE L1 867 997 -1493 2366 58 3 3 chr3 134062310 134062641 -83974517 + AluY SINE Alu 1 311 0 349 295 101 40 chr3 134062641 134063099 -83974059 + L1MEd LINE L1 997 1592 -898 1622 157 52 36 chr3 134063688 134063994 -83973164 + AluJo SINE Alu 1 311 -1 210 118 0 0 chr3 134064392 134064426 -83972732 + (GAAA)n Simple_repeat Simple_repeat 1 34 0 210 191 86 67 chr3 134065955 134066060 -83971098 - MIR SINE MIR -50 212 106 180 250 18 36 chr3 134066174 134066230 -83970928 + MIR SINE MIR 78 132 -130 512 333 94 4 chr3 134066488 134066722 -83970436 + L3 LINE CR1 923 1177 -400 194 414 68 0 chr3 134067092 134067225 -83969933 - L2 LINE L2 -9 3263 3122 498 255 182 5 chr3 134067817 134068009 -83969149 + L2 LINE L2 3088 3313 0 214 332 254 10 chr3 134068725 134068918 -83968240 + L2 LINE L2 2429 2668 -646 2218 129 0 7 chr3 134072252 134072562 -83964596 - AluSx SINE Alu -4 308 1 399 21 0 0 chr3 134072726 134072774 -83964384 + (TG)n Simple_repeat Simple_repeat 1 48 0 466 265 130 43 chr3 134072859 134073044 -83964114 + MIR SINE MIR 20 220 -42 554 116 0 23 chr3 134073106 134073192 -83963966 - AluSg/x SINE Alu -8 301 218 270 260 10 20 chr3 134073304 134073404 -83963754 + G-rich Low_complexity Low_complexity 3 101 0 678 75 0 0 chr3 134073670 134073763 -83963395 + (GGAA)n Simple_repeat Simple_repeat 4 96 0 198 0 0 0 chr3 134074565 134074587 -83962571 + (A)n Simple_repeat Simple_repeat 1 22 0 1916 204 68 25 chr3 134074801 134075243 -83961915 - LTR40b LTR ERVL 0 462 2 219 389 46 8 chr3 134075268 134075399 -83961759 - MIR SINE MIR -6 256 121 329 240 184 8 chr3 134075481 134075606 -83961552 - MIR SINE MIR -3 259 113 1608 166 4 4 chr3 134075668 134075946 -83961212 - AluJb SINE Alu -13 299 22 638 233 140 50 chr3 134075989 134076289 -83960869 + L3 LINE CR1 1101 1427 -150 1855 108 0 4 chr3 134076807 134077066 -83960092 + AluSx SINE Alu 55 312 0 884 264 150 49 chr3 134077069 134077721 -83959437 + L1ME4a LINE L1 5297 6014 -107 1808 277 57 0 chr3 134077939 134078412 -83958746 + L1MA7 LINE L1 10 509 -5772 14048 188 58 61 chr3 134078783 134081188 -83955970 + L1MA7 LINE L1 658 3069 -3426 1570 115 55 0 chr3 134081188 134081406 -83955752 + MER30 DNA MER1_type 1 230 0 14048 188 58 61 chr3 134081406 134084985 -83952173 + L1MA7 LINE L1 3069 6297 -198 2142 127 3 0 chr3 134084985 134085276 -83951882 - AluSq SINE Alu -21 292 1 14048 188 58 61 chr3 134085276 134085466 -83951692 + L1MA7 LINE L1 6297 6486 -9 22 0 0 0 chr3 134085986 134086008 -83951150 + AT_rich Low_complexity Low_complexity 1 22 0 98 9 0 0 chr3 134086054 134086159 -83950999 + AT_rich Low_complexity Low_complexity 1 105 0 1590 167 0 39 chr3 134086688 134086970 -83950188 + AluJb SINE Alu 25 295 -17 266 283 67 58 chr3 134087509 134087629 -83949529 + MIR SINE MIR 21 141 -67 2151 94 0 38 chr3 134087756 134088076 -83949082 + AluY SINE Alu 1 308 -3 324 260 170 15 chr3 134088334 134088507 -83948651 + MIR3 SINE MIR 14 207 -55 1745 151 28 0 chr3 134088854 134089138 -83948020 - AluJo SINE Alu -12 300 9 1662 131 31 24 chr3 134089145 134089436 -83947722 - L1MB7 LINE L1 -25 6159 5867 27 73 0 0 chr3 134089724 134089779 -83947379 + AT_rich Low_complexity Low_complexity 1 55 0 248 296 112 0 chr3 134090095 134090193 -83946965 - MIR3 SINE MIR -19 189 81 541 277 193 5 chr3 134090194 134090396 -83946762 - MIR SINE MIR -19 243 4 428 305 0 34 chr3 134091612 134091730 -83945428 - L2 LINE L2 -3 3269 3156 353 295 107 44 chr3 134091964 134092262 -83944896 - L1M4 LINE L1 -832 5314 4998 603 258 98 45 chr3 134092265 134092358 -83944800 + L1ME4a LINE L1 5569 5656 -465 1903 128 11 4 chr3 134092358 134092682 -83944476 + AluSx SINE Alu 1 326 0 603 258 98 45 chr3 134092682 134092944 -83944214 + L1ME4a LINE L1 5656 5944 -177 243 196 87 0 chr3 134092953 134092999 -83944159 + L2 LINE L2 3223 3272 0 2536 68 7 0 chr3 134093541 134093850 -83943308 + AluSx SINE Alu 1 311 -1 851 256 144 42 chr3 134094349 134095238 -83941920 + L1MC4a LINE L1 4945 5403 -743 328 294 59 38 chr3 134095535 134095773 -83941385 + L2 LINE L2 1554 1796 -1518 318 235 88 0 chr3 134095787 134095889 -83941269 - HAL1b LINE L1 -175 1173 1063 4038 206 95 27 chr3 134095933 134096054 -83941104 - L1ME1 LINE L1 0 6166 6055 2276 84 12 26 chr3 134096054 134096398 -83940760 + L1PA14 LINE L1 5806 6144 -17 4038 206 95 27 chr3 134096398 134098199 -83938959 - L1ME1 LINE L1 -111 6055 4104 481 258 108 26 chr3 134098193 134098992 -83938166 - HAL1b LINE L1 -95 1253 249 * 400 188 0 0 chr3 134099000 134099069 -83938089 - AluJ/FRAM SINE Alu -1 301 233 283 274 78 49 chr3 134099257 134099359 -83937799 - L2 LINE L2 0 3313 3209 823 182 51 47 chr3 134099360 134099596 -83937562 + L1MB4 LINE L1 5943 6179 -1 204 338 0 0 chr3 134100267 134100335 -83936823 + L2 LINE L2 3244 3311 -2 300 269 60 67 chr3 134100671 134100805 -83936353 + MER20B DNA MER1_type 1 133 -650 260 282 14 0 chr3 134101343 134101414 -83935744 - MARNA DNA Mariner -346 240 169 1011 218 52 13 chr3 134101665 134101894 -83935264 + MIR SINE MIR 17 254 -8 27 49 0 0 chr3 134102592 134102633 -83934525 + AT_rich Low_complexity Low_complexity 1 41 0 213 175 0 0 chr3 134102666 134102706 -83934452 + (CATA)n Simple_repeat Simple_repeat 2 41 0 359 123 92 0 chr3 134102706 134102771 -83934387 + MER21A LTR ERV1 13 83 -848 3630 173 41 89 chr3 134102871 134103810 -83933348 + MER21A LTR ERV1 70 912 -19 502 253 115 69 chr3 134103839 134104144 -83933014 + MLT1I LTR MaLR 91 409 0 22 0 0 0 chr3 134104665 134104687 -83932471 + AT_rich Low_complexity Low_complexity 1 22 0 701 177 31 0 chr3 134105416 134105546 -83931612 + MIR SINE MIR 117 250 -12 23 68 0 0 chr3 134106942 134106986 -83930172 + AT_rich Low_complexity Low_complexity 1 44 0 304 331 32 7 chr3 134107028 134107182 -83929976 - L1ME LINE L1 -333 5788 5631 25 0 0 0 chr3 134107372 134107397 -83929761 + AT_rich Low_complexity Low_complexity 1 25 0 277 280 102 6 chr3 134107433 134107590 -83929568 + L1ME4a LINE L1 5762 5933 -188 2209 96 3 22 chr3 134107778 134108092 -83929066 - AluSg SINE Alu -2 308 1 187 54 54 0 chr3 134109101 134109138 -83928020 + A-rich Low_complexity Low_complexity 2 40 0 1760 243 25 23 chr3 134109785 134110300 -83926858 + L1ME3 LINE L1 5590 6105 -57 31 26 0 0 chr3 134110337 134110375 -83926783 + AT_rich Low_complexity Low_complexity 1 38 0 608 311 52 0 chr3 134110615 134110808 -83926350 + MIR SINE MIR 43 245 -17 23 33 0 0 chr3 134112029 134112059 -83925099 + AT_rich Low_complexity Low_complexity 1 30 0 300 241 58 0 chr3 134112640 134112727 -83924431 + LTR33 LTR ERVL 3 94 -427 2155 189 28 7 chr3 134112738 134113161 -83923997 + LTR40c LTR ERVL 34 465 0 882 262 57 59 chr3 134113172 134113576 -83923582 + LTR33 LTR ERVL 117 519 -2 692 232 42 6 chr3 134113789 134113957 -83923201 - MER58B DNA MER1_type 0 341 168 1426 152 167 3 chr3 134114010 134114346 -83922812 - MER3 DNA MER1_type 0 2624 2234 770 138 8 0 chr3 134114354 134114477 -83922681 - MER3 DNA MER1_type -87 122 46 32 0 0 0 chr3 134115010 134115042 -83922116 + AT_rich Low_complexity Low_complexity 1 32 0 195 331 65 24 chr3 134116116 134116240 -83920918 + L3b LINE CR1 1387 1515 -68 1447 153 31 24 chr3 134116443 134116738 -83920420 - L1MB3 LINE L1 -132 6051 5750 22 35 0 0 chr3 134116759 134116788 -83920370 + AT_rich Low_complexity Low_complexity 1 29 0 29 78 0 0 chr3 134117315 134117379 -83919779 + AT_rich Low_complexity Low_complexity 1 64 0 1188 184 88 20 chr3 134118041 134118346 -83918812 - L1MC4 LINE L1 -37 8005 7680 4200 134 23 8 chr3 134118382 134119197 -83917961 - L1MB1 LINE L1 -196 5972 5142 704 196 22 7 chr3 134119188 134119326 -83917832 - L1MC4 LINE L1 -1158 6884 6745 * 742 255 77 49 chr3 134119939 134120186 -83916972 + MIR SINE MIR 9 262 0 211 245 236 9 chr3 134120384 134120490 -83916668 - MIR SINE MIR -118 144 15 2019 91 4 0 chr3 134121550 134121815 -83915343 - AluSx SINE Alu -46 266 1 543 199 228 47 chr3 134122101 134122443 -83914715 - L1ME4a LINE L1 -21 6100 5697 288 273 74 45 chr3 134122569 134122718 -83914440 - L2 LINE L2 -483 2831 2675 1071 192 137 29 chr3 134122718 134123025 -83914133 + MER58B DNA MER1_type 1 340 -1 288 273 74 45 chr3 134123025 134123051 -83914107 - L2 LINE L2 -639 2675 2651 424 248 162 30 chr3 134123246 134123377 -83913781 + LTR33 LTR ERVL 296 463 -58 2412 74 0 0 chr3 134123377 134123686 -83913472 - AluY SINE Alu -2 309 1 424 248 162 30 chr3 134123686 134123752 -83913406 + LTR33 LTR ERVL 463 519 -2 259 328 24 92 chr3 134123755 134124167 -83912991 - L2 LINE L2 -701 2613 2230 221 238 0 0 chr3 134124407 134124449 -83912709 + polypurine Low_complexity Low_complexity 4 45 0 182 324 43 36 chr3 134124471 134124610 -83912548 - MER5A DNA MER1_type 0 189 50 * 706 245 0 0 chr3 134124489 134124640 -83912518 + MER5A DNA MER1_type 30 180 -9 1383 186 118 0 chr3 134124707 134124986 -83912172 + AluSx SINE Alu 1 312 0 192 122 41 82 chr3 134125580 134125629 -83911529 - L2 LINE L2 0 3313 3267 372 97 0 16 chr3 134125633 134125695 -83911463 - MER53 DNA DNA 0 189 129 213 381 52 0 chr3 134125710 134125807 -83911351 - L2 LINE L2 -20 3252 3151 2495 61 0 0 chr3 134126111 134126407 -83910751 + AluY SINE Alu 1 296 -15 539 77 0 0 chr3 134126673 134126751 -83910407 - L1PA5 LINE L1 0 6154 6077 486 229 224 26 chr3 134127485 134127677 -83909481 - MIR SINE MIR -1 261 32 1334 229 84 53 chr3 134127732 134128125 -83909033 - LTR16C LTR ERVL -16 475 71 327 241 13 0 chr3 134129428 134129507 -83907651 - L2 LINE L2 0 3313 3234 275 174 12 0 chr3 134129607 134129693 -83907465 + CT-rich Low_complexity Low_complexity 4 90 0 195 69 0 0 chr3 134129710 134129739 -83907419 + (CCG)n Simple_repeat Simple_repeat 2 30 0 21 71 0 0 chr3 134129818 134129860 -83907298 + GC_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr3 134129984 134130014 -83907144 + GC_rich Low_complexity Low_complexity 1 30 0 211 342 87 31 chr3 134131171 134131332 -83905826 - L3 LINE CR1 -1373 204 35 4325 207 54 84 chr3 134131692 134132302 -83904856 + L1M4 LINE L1 2330 2957 -3189 1815 167 4 0 chr3 134132302 134132583 -83904575 + AluSx SINE Alu 1 282 -30 4325 207 54 84 chr3 134132583 134133555 -83903603 + L1M4 LINE L1 2957 3865 -2281 1682 206 45 43 chr3 134133555 134134021 -83903137 + MLT1C LTR MaLR 1 467 0 872 182 7 0 chr3 134134045 134134193 -83902965 + AluJb SINE Alu 3 151 -161 24 0 0 0 chr3 134134214 134134238 -83902920 + AT_rich Low_complexity Low_complexity 1 24 0 459 192 0 10 chr3 134134238 134134342 -83902816 + L1M4 LINE L1 3875 3977 -2169 234 280 0 13 chr3 134134497 134134572 -83902586 - MLT1L LTR MaLR -536 79 6 468 0 0 0 chr3 134134667 134134719 -83902439 + (TG)n Simple_repeat Simple_repeat 2 53 0 846 126 8 0 chr3 134134961 134135080 -83902078 + FLAM_C SINE Alu 1 120 -23 3138 51 46 2 chr3 134135541 134135953 -83901205 - L1PA7 LINE L1 -1 6153 5724 965 193 6 0 chr3 134136201 134136372 -83900786 - MER58B DNA MER1_type 0 341 170 271 316 0 0 chr3 134137014 134137109 -83900049 + L3b LINE CR1 1305 1399 -184 2482 64 10 10 chr3 134137540 134137876 -83899282 - AluY SINE Alu 0 336 1 259 346 83 5 chr3 134138262 134138467 -83898691 - L2 LINE L2 -677 2637 2417 237 271 52 21 chr3 134138830 134138926 -83898232 + MIR3 SINE MIR 81 179 -29 3319 211 64 47 chr3 134139598 134140488 -83896670 - L1ME1 LINE L1 -4 6162 5258 1298 175 6 52 chr3 134140488 134140725 -83896433 + MLT1D LTR MaLR 230 439 -66 2513 34 40 0 chr3 134140725 134141021 -83896137 - AluY SINE Alu -3 308 1 1298 175 6 52 chr3 134141021 134141059 -83896099 + MLT1D LTR MaLR 439 477 -28 25 51 0 0 chr3 134142549 134142588 -83894570 + AT_rich Low_complexity Low_complexity 1 39 0 1232 167 136 50 chr3 134143025 134143348 -83893810 + MLT1B LTR MaLR 1 351 -39 1857 148 102 3 chr3 134144054 134144386 -83892772 - MLT1A1 LTR MaLR 0 365 1 262 258 15 0 chr3 134144648 134144714 -83892444 - MIR3 SINE MIR -5 203 137 714 181 62 7 chr3 134148619 134148763 -83888395 + FRAM SINE Alu 10 161 -15 689 285 72 50 chr3 134152220 134152764 -83884394 + L1MEd LINE L1 438 993 -5537 349 240 18 73 chr3 134152853 134153082 -83884076 + L1MEd LINE L1 2356 2578 -3962 251 278 66 13 chr3 134153086 134153237 -83883921 + L1MEd LINE L1 2631 2789 -3751 1857 108 108 18 chr3 134153736 134154068 -83883090 - L1MB3 LINE L1 -1 6182 5821 292 196 0 0 chr3 134154069 134154115 -83883043 - tRNA-Arg-CGC tRNA tRNA -30 46 1 1643 124 33 7 chr3 134154122 134154396 -83882762 - L1MB3 LINE L1 -352 5831 5551 384 264 81 17 chr3 134154801 134154975 -83882183 - MIR SINE MIR -40 222 38 237 65 0 0 chr3 134156474 134156505 -83880653 + (CAT)n Simple_repeat Simple_repeat 3 33 0 24 63 0 16 chr3 134156739 134156756 -83880402 + AT_rich Low_complexity Low_complexity 1 17 -45 1939 126 77 0 chr3 134156756 134157042 -83880116 + AluJb SINE Alu 1 308 -4 24 63 0 16 chr3 134157042 134157087 -83880071 + AT_rich Low_complexity Low_complexity 17 62 0 42 0 0 0 chr3 134157304 134157346 -83879812 + AT_rich Low_complexity Low_complexity 1 42 0 5176 222 92 5 chr3 134157401 134158505 -83878653 - L1PA13 LINE L1 -5588 1199 1 1533 134 0 0 chr3 134159175 134159384 -83877774 - AluSg/x SINE Alu -18 292 84 229 280 19 56 chr3 134159647 134159754 -83877404 + MIR3 SINE MIR 3 105 -103 305 247 74 0 chr3 134159781 134159862 -83877296 - L2 LINE L2 -45 3227 3141 224 333 0 0 chr3 134160059 134160134 -83877024 + L2 LINE L2 3226 3300 -13 194 260 13 91 chr3 134160291 134160368 -83876790 - L2 LINE L2 -529 2785 2715 1620 238 137 69 chr3 134160384 134161097 -83876061 + LTR41 LTR ERVL 5 766 -7 374 154 13 0 chr3 134161295 134161373 -83875785 + GA-rich Low_complexity Low_complexity 3 81 0 312 207 147 17 chr3 134162235 134162351 -83874807 + L2 LINE L2 3139 3269 -3 996 209 27 14 chr3 134163533 134163753 -83873405 - MIR SINE MIR -33 229 7 181 306 128 33 chr3 134163846 134164026 -83873132 - MIR SINE MIR -32 230 34 477 0 0 0 chr3 134164030 134164083 -83873075 + (TG)n Simple_repeat Simple_repeat 2 54 0 1846 170 11 0 chr3 134164083 134164365 -83872793 - AluJb SINE Alu -27 285 1 3464 235 151 1 chr3 134165552 134166669 -83870489 + L2 LINE L2 1620 2904 -410 303 288 0 93 chr3 134166853 134166903 -83870255 - L2 LINE L2 -1 3271 3218 437 269 9 9 chr3 134166903 134167011 -83870147 + MER81 DNA DNA 4 111 -3 303 288 0 93 chr3 134167011 134167099 -83870059 - L2 LINE L2 -54 3218 3146 477 267 118 5 chr3 134167836 134168023 -83869135 - MIR SINE MIR -4 258 51 210 274 32 0 chr3 134168646 134168708 -83868450 + L2 LINE L2 3250 3313 0 790 262 34 37 chr3 134169397 134169688 -83867470 - L1ME1 LINE L1 -26 6152 5860 606 310 25 0 chr3 134171263 134171463 -83865695 - MIR SINE MIR -43 219 15 253 256 144 0 chr3 134171728 134171818 -83865340 + MIR SINE MIR 85 187 -75 1737 255 19 37 chr3 134172111 134172574 -83864584 - LTR16C LTR ERVL -1 490 36 508 227 86 121 chr3 134174432 134174771 -83862387 - L1MC4 LINE L1 -27 8015 7689 4134 143 32 3 chr3 134174773 134175453 -83861705 - L1MB3 LINE L1 -3 6180 5481 270 0 0 0 chr3 134175456 134175486 -83861672 + (TTTTA)n Simple_repeat Simple_repeat 5 34 0 738 175 16 0 chr3 134175487 134175613 -83861545 - FAM SINE Alu -30 155 28 939 181 88 0 chr3 134175630 134175930 -83861228 - L1MB3 LINE L1 -701 5482 5145 327 160 53 32 chr3 134175933 134176027 -83861131 + Charlie5 DNA MER1_type 2490 2585 -27 683 233 67 74 chr3 134176038 134176083 -83861075 - L1MC4 LINE L1 -547 7495 7451 1752 166 42 7 chr3 134176083 134176367 -83860791 + AluJb SINE Alu 3 296 -16 683 233 67 74 chr3 134176367 134176591 -83860567 - L1MC4 LINE L1 -591 7451 7228 627 211 97 11 chr3 134177694 134177869 -83859289 + L1ME1 LINE L1 5012 5201 -945 1066 171 37 0 chr3 134177871 134177995 -83859163 + AluJo SINE Alu 1 136 -176 180 0 0 0 chr3 134177995 134178015 -83859143 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1066 171 37 0 chr3 134178015 134178077 -83859081 + AluJo SINE Alu 136 194 -118 3227 207 47 29 chr3 134178077 134178452 -83858706 + L1ME1 LINE L1 5214 5581 -753 581 0 0 14 chr3 134178452 134178522 -83858636 + (TTTC)n Simple_repeat Simple_repeat 2 70 0 2100 125 0 0 chr3 134178525 134178805 -83858353 - AluSq SINE Alu -33 280 1 3227 207 47 29 chr3 134178805 134179321 -83857837 + L1ME1 LINE L1 5582 6278 -56 232 250 16 0 chr3 134179701 134179765 -83857393 + L1ME4a LINE L1 5479 5543 -641 302 311 170 7 chr3 134179789 134180059 -83857099 + L1ME4a LINE L1 5613 5926 -236 2308 175 46 56 chr3 134180429 134180932 -83856226 - MLT1D LTR MaLR -7 498 1 386 284 196 0 chr3 134181245 134181393 -83855765 - MER5A DNA MER1_type 0 189 13 320 227 34 45 chr3 134183093 134183181 -83853977 - MIR SINE MIR -89 119 33 372 332 87 0 chr3 134184395 134184603 -83852555 - MIR SINE MIR -9 253 28 221 178 0 22 chr3 134184709 134184754 -83852404 + L2 LINE L2 3265 3308 -5 261 225 79 22 chr3 134185605 134185694 -83851464 - L1ME4a LINE L1 -175 5946 5853 299 233 75 42 chr3 134185853 134185973 -83851185 + L1ME4a LINE L1 5996 6119 -2 184 270 0 79 chr3 134186042 134186105 -83851053 + MIR SINE MIR 93 150 -112 602 194 54 11 chr3 134186410 134186619 -83850539 - ORSL DNA AcHobo 0 275 2 662 271 137 9 chr3 134187617 134187994 -83849164 - LTR33 LTR ERVL -1 520 53 1016 199 4 35 chr3 134188273 134188499 -83848659 - MER20 DNA MER1_type 0 219 1 183 184 0 0 chr3 134188960 134188998 -83848160 + T-rich Low_complexity Low_complexity 1 38 0 363 344 53 0 chr3 134189112 134189243 -83847915 + MER91A DNA MER1_type 58 195 -1 2653 167 74 75 chr3 134189615 134190267 -83846891 + MLT1E1 LTR MaLR 1 651 -3 214 93 23 23 chr3 134191835 134191878 -83845280 + (TTCC)n Simple_repeat Simple_repeat 4 46 0 3295 114 26 2 chr3 134192742 134193232 -83843926 - L1PA15 LINE L1 -1 6164 5663 2298 173 40 30 chr3 134194039 134194289 -83842869 + MER61D LTR ERV1 69 326 -175 1963 145 3 0 chr3 134194289 134194578 -83842580 + AluSg SINE Alu 2 291 -19 2298 173 40 30 chr3 134194578 134194755 -83842403 + MER61D LTR ERV1 326 500 -1 825 198 19 123 chr3 134195130 134195438 -83841720 + MER93b LTR ERV1 98 373 0 1542 169 50 0 chr3 134195438 134195680 -83841478 + MER1B DNA MER1_type 1 254 -85 801 79 44 0 chr3 134195801 134195915 -83841243 + L1PA13 LINE L1 6045 6163 0 628 216 113 43 chr3 134198499 134198684 -83838474 + L1ME2 LINE L1 5899 6096 -68 203 61 30 0 chr3 134201747 134201780 -83835378 + (GGGTG)n Simple_repeat Simple_repeat 3 36 0 315 292 88 9 chr3 134201909 134202022 -83835136 + MIR3 SINE MIR 60 181 -27 480 280 86 25 chr3 134202279 134202522 -83834636 + LTR33 LTR ERVL 27 284 -237 516 190 0 10 chr3 134202569 134202669 -83834489 + LTR33 LTR ERVL 423 521 0 537 206 211 20 chr3 134203223 134203427 -83833731 - MIR SINE MIR 0 262 20 771 219 127 20 chr3 134203434 134203726 -83833432 - L1MC5 LINE L1 -30 7931 7609 295 364 54 16 chr3 134204708 134204837 -83832321 + L2 LINE L2 3139 3272 0 371 311 15 15 chr3 134206289 134206424 -83830734 - MER5A DNA MER1_type -47 142 8 329 278 43 9 chr3 134206556 134206671 -83830487 - MIR3 SINE MIR -23 185 67 348 267 50 0 chr3 134206805 134206906 -83830252 - MER5A DNA MER1_type -80 109 4 527 292 185 5 chr3 134207422 134207617 -83829541 + MIR SINE MIR 29 258 -4 1894 283 68 9 chr3 134207749 134208581 -83828577 + MER45C DNA AcHobo 29 953 0 2034 220 5 3 chr3 134208908 134209290 -83827868 + MER119 DNA MER1_type 1 383 -200 1731 93 37 19 chr3 134209300 134209569 -83827589 + L1MA8 LINE L1 5994 6267 -24 934 218 39 5 chr3 134209573 134209779 -83827379 + MER119 DNA MER1_type 369 581 -2 33 43 0 0 chr3 134209991 134210038 -83827120 + AT_rich Low_complexity Low_complexity 1 47 0 2032 133 72 20 chr3 134210627 134210973 -83826185 + THE1B LTR MaLR 1 364 0 478 264 18 31 chr3 134212307 134212470 -83824688 - MIR3 SINE MIR -12 196 36 514 288 19 6 chr3 134214496 134214656 -83822502 + MER117 DNA MER1_type 1 162 -35 570 230 220 0 chr3 134216132 134216323 -83820835 + MIR SINE MIR 29 261 -1 345 164 164 0 chr3 134216580 134216653 -83820505 + L2 LINE L2 3228 3312 -1 320 295 45 0 chr3 134216676 134216788 -83820370 - L2 LINE L2 -1 3271 3155 1759 158 48 0 chr3 134218064 134218355 -83818803 - AluJo SINE Alu -7 305 1 703 317 55 44 chr3 134218656 134219091 -83818067 + L3 LINE CR1 367 806 -771 558 328 129 39 chr3 134219617 134220230 -83816928 + L3 LINE CR1 909 1576 -1 24 0 0 0 chr3 134220380 134220404 -83816754 + AT_rich Low_complexity Low_complexity 1 24 0 192 388 0 10 chr3 134221558 134221656 -83815502 - L2 LINE L2 -68 3204 3108 461 275 126 6 chr3 134221807 134221989 -83815169 - MIR SINE MIR -18 244 41 189 191 32 79 chr3 134222256 134222319 -83814839 - L2 LINE L2 -832 2482 2423 383 305 38 8 chr3 134222713 134222844 -83814314 + MIR3 SINE MIR 25 159 -49 750 272 126 4 chr3 134222846 134223092 -83814066 + Charlie8 DNA MER1_type 1 276 -2141 229 255 0 0 chr3 134223146 134223197 -83813961 + Charlie8 DNA MER1_type 1366 1416 -1001 341 326 112 20 chr3 134226031 134226227 -83810931 + MIR SINE MIR 49 262 0 1262 193 149 22 chr3 134228031 134228352 -83808806 + MLT1A1 LTR MaLR 2 363 -2 291 317 168 0 chr3 134228402 134228569 -83808589 + MIR SINE MIR 20 214 -48 386 232 113 40 chr3 134228904 134229055 -83808103 - MIR3 SINE MIR -9 199 38 509 152 0 13 chr3 134230470 134230549 -83806609 + polypyrimidine Low_complexity Low_complexity 1 78 0 189 340 14 49 chr3 134231887 134232031 -83805127 + L2 LINE L2 2346 2484 -830 1089 132 59 64 chr3 134233512 134233732 -83803426 + MER20 DNA MER1_type 1 219 0 309 289 106 17 chr3 134233767 134233947 -83803211 + MIR SINE MIR 63 258 -4 732 336 120 37 chr3 134235508 134236680 -83800478 - L2 LINE L2 -557 2757 1488 320 197 28 0 chr3 134237536 134237607 -83799551 + MIR SINE MIR 72 144 -118 1083 127 0 0 chr3 134237631 134237781 -83799377 + AluSg/x SINE Alu 154 303 -9 808 60 0 17 chr3 134237961 134238078 -83799080 + (TTCC)n Simple_repeat Simple_repeat 2 116 0 211 284 60 90 chr3 134238769 134238903 -83798255 - L2 LINE L2 -1 3271 3142 359 217 123 29 chr3 134239148 134239286 -83797872 + L1ME3A LINE L1 6020 6170 0 207 258 0 45 chr3 134239977 134240043 -83797115 + L2 LINE L2 3241 3303 -10 221 412 18 18 chr3 134240347 134240461 -83796697 - L2 LINE L2 -6 3266 3153 2331 77 0 35 chr3 134240637 134240948 -83796210 - AluY SINE Alu -11 300 1 339 268 80 29 chr3 134240994 134241132 -83796026 - L1ME4a LINE L1 -21 6100 5956 463 256 35 50 chr3 134241519 134241632 -83795526 - L1MC4a LINE L1 -1873 5935 5825 2467 44 3 10 chr3 134241632 134241928 -83795230 - AluY SINE Alu -17 294 1 463 256 35 50 chr3 134241928 134242013 -83795145 - L1MC4a LINE L1 -1983 5825 5740 237 363 0 29 chr3 134242125 134242227 -83794931 - L3b LINE CR1 -237 1346 1248 208 254 41 79 chr3 134242452 134242642 -83794516 + MIR SINE MIR 40 212 -50 192 261 250 0 chr3 134245069 134245157 -83792001 + MIR3 SINE MIR 88 197 -11 763 190 0 21 chr3 134246192 134246334 -83790824 - FRAM SINE Alu -25 151 13 845 165 0 0 chr3 134247386 134247519 -83789639 + FLAM_C SINE Alu 1 133 0 358 300 165 32 chr3 134248200 134248348 -83788810 - L1MC4a LINE L1 -2135 5673 5546 405 0 0 0 chr3 134248348 134248393 -83788765 + (TG)n Simple_repeat Simple_repeat 2 46 0 358 300 165 32 chr3 134248393 134248614 -83788544 - L1MC4a LINE L1 -2262 5546 5255 642 266 30 27 chr3 134248823 134249079 -83788079 - L1MC4a LINE L1 -209 5912 5774 598 230 128 20 chr3 134249079 134249393 -83787765 - Charlie2a DNA MER1_type 0 2862 1473 540 277 245 4 chr3 134249593 134249871 -83787287 - MLT1G1 LTR MaLR -7 588 244 213 369 27 13 chr3 134250590 134250739 -83786419 - MIR SINE MIR -7 255 105 310 238 0 24 chr3 134252830 134252914 -83784244 + MER5A DNA MER1_type 108 189 0 265 325 0 0 chr3 134254744 134254827 -83782331 + MIR SINE MIR 71 153 -109 454 256 31 8 chr3 134256119 134256248 -83780910 - MIR SINE MIR -108 154 23 206 330 0 9 chr3 134256969 134257075 -83780083 + GA-rich Low_complexity Low_complexity 1 105 0 450 301 86 29 chr3 134257318 134257527 -83779631 + MIR SINE MIR 33 253 -9 621 255 5 42 chr3 134258204 134258396 -83778762 + MIR SINE MIR 78 262 0 228 269 11 32 chr3 134258769 134258862 -83778296 + MIR SINE MIR 119 209 -53 212 88 0 0 chr3 134259291 134259325 -83777833 + L2 LINE L2 3280 3313 0 362 225 0 14 chr3 134260201 134260272 -83776886 - MER113 DNA MER1_type? 0 521 452 5121 141 67 26 chr3 134261020 134261919 -83775239 - L1MA5A LINE L1 -10 6287 5426 2393 98 0 0 chr3 134261919 134262216 -83774942 + AluSx SINE Alu 1 297 -15 5121 141 67 26 chr3 134262216 134262260 -83774898 - L1MA5A LINE L1 -871 5426 5385 189 0 0 0 chr3 134262260 134262281 -83774877 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 5121 141 67 26 chr3 134262281 134262420 -83774738 - L1MA5A LINE L1 -912 5385 5152 1652 173 3 0 chr3 134262417 134262706 -83774452 + L1MA5A LINE L1 4857 5146 -1000 * 392 240 31 128 chr3 134262771 134262967 -83774191 + MER5B DNA MER1_type 1 177 -1 323 257 101 9 chr3 134264554 134264663 -83772495 + MIR SINE MIR 141 259 -3 341 305 50 7 chr3 134264934 134265075 -83772083 - MIR SINE MIR -69 193 47 2061 154 3 3 chr3 134265711 134266022 -83771136 + AluSx SINE Alu 1 311 -1 455 330 32 27 chr3 134266258 134266443 -83770715 - L2 LINE L2 -1 3271 3086 489 250 53 32 chr3 134267959 134268147 -83769011 - L2 LINE L2 0 3313 3122 205 274 12 24 chr3 134268407 134268491 -83768667 - MIR SINE MIR -71 191 109 291 244 61 0 chr3 134268718 134268800 -83768358 - MIR SINE MIR -73 135 49 265 207 186 71 chr3 134270427 134270478 -83766680 + MIR SINE MIR 107 151 -111 1083 278 70 13 chr3 134270478 134270863 -83766295 + MLT1I LTR MaLR 1 407 -2 265 207 186 71 chr3 134270863 134270951 -83766207 + MIR SINE MIR 151 262 0 231 123 88 53 chr3 134270968 134271025 -83766133 - MLT1L LTR MaLR -8 607 549 180 77 0 0 chr3 134271048 134271074 -83766084 + (TTCTCC)n Simple_repeat Simple_repeat 6 31 0 431 272 78 71 chr3 134271136 134271629 -83765529 - L1MEd LINE L1 -4862 1257 776 421 165 0 12 chr3 134271636 134271721 -83765437 - L1MA9 LINE L1 0 6312 6229 270 144 0 75 chr3 134271722 134271910 -83765248 + (TA)n Simple_repeat Simple_repeat 2 175 0 327 181 8 60 chr3 134271921 134272054 -83765104 + (TA)n Simple_repeat Simple_repeat 2 127 0 288 77 0 0 chr3 134272054 134272093 -83765065 + (CA)n Simple_repeat Simple_repeat 2 40 0 1253 221 82 14 chr3 134272808 134273174 -83763984 - MLT1L LTR MaLR -224 391 1 32 43 0 0 chr3 134273369 134273415 -83763743 + AT_rich Low_complexity Low_complexity 1 46 0 2175 132 3 0 chr3 134273617 134273920 -83763238 + AluSx SINE Alu 1 304 -8 627 246 33 28 chr3 134274691 134274902 -83762256 + MIR SINE MIR 2 213 -49 294 254 191 18 chr3 134276496 134276606 -83760552 - L2 LINE L2 -8 3305 3177 191 188 47 62 chr3 134276869 134276933 -83760225 - L2 LINE L2 -537 2777 2715 386 253 173 15 chr3 134277945 134278153 -83759005 - MIR SINE MIR -11 251 15 1821 120 104 10 chr3 134278181 134278490 -83758668 - MER44D DNA MER2_type -1 608 1 23 54 0 0 chr3 134278961 134278998 -83758160 + AT_rich Low_complexity Low_complexity 1 37 0 207 283 94 28 chr3 134280326 134280432 -83756726 - MIR SINE MIR -18 244 132 23 0 0 0 chr3 134280976 134280999 -83756159 + AT_rich Low_complexity Low_complexity 1 23 0 230 313 35 35 chr3 134282177 134282292 -83754866 - L2 LINE L2 -8 3264 3150 306 0 0 0 chr3 134282307 134282341 -83754817 + (TA)n Simple_repeat Simple_repeat 2 35 0 2185 94 3 10 chr3 134282426 134282714 -83754444 + AluSx SINE Alu 22 307 -5 387 257 80 9 chr3 134282840 134282953 -83754205 + L2 LINE L2 3193 3313 0 14927 119 64 4 chr3 134283994 134284516 -83752642 + Tigger1 DNA MER2_type 2 491 -1927 2220 100 3 3 chr3 134284516 134284807 -83752351 + AluSg SINE Alu 1 291 -19 14927 119 64 4 chr3 134284807 134286565 -83750593 + Tigger1 DNA MER2_type 491 2418 0 383 250 14 45 chr3 134286748 134286927 -83750231 - MIR SINE MIR -50 212 41 666 346 60 0 chr3 134289138 134289456 -83747702 - L3 LINE CR1 -2 1575 1239 200 269 135 39 chr3 134289668 134289772 -83747386 - L2 LINE L2 -2 3311 3198 1995 240 102 21 chr3 134292076 134292705 -83744453 + L1ME3 LINE L1 5482 6161 -1 373 310 84 0 chr3 134293407 134293549 -83743609 + MIR3 SINE MIR 40 193 -15 34 0 0 0 chr3 134294728 134294762 -83742396 + AT_rich Low_complexity Low_complexity 1 34 0 349 217 42 105 chr3 134294762 134294905 -83742253 - MARNA DNA Mariner -209 377 244 6421 153 3 1 chr3 134295454 134297129 -83740029 + L1PB1 LINE L1 4470 6148 -3 296 260 108 0 chr3 134297452 134297585 -83739573 - MIR SINE MIR -17 245 94 486 209 26 17 chr3 134297662 134297777 -83739381 - MER5B DNA MER1_type -57 121 6 1089 182 11 0 chr3 134297833 134298020 -83739138 - MER5A DNA MER1_type 0 189 1 182 314 0 0 chr3 134299334 134299385 -83737773 - MIR SINE MIR -59 149 99 256 254 146 31 chr3 134303471 134303601 -83733557 + MIR SINE MIR 2 146 -116 264 241 28 50 chr3 134303795 134303936 -83733222 - MIR3 SINE MIR -61 147 10 189 206 15 103 chr3 134303966 134304034 -83733124 + L2 LINE L2 3241 3302 -11 375 228 0 110 chr3 134304563 134304690 -83732468 + L2 LINE L2 3201 3313 0 338 262 0 12 chr3 134305054 134305138 -83732020 + MIR SINE MIR 28 110 -152 22 0 0 0 chr3 134305460 134305482 -83731676 + AT_rich Low_complexity Low_complexity 1 22 0 999 129 0 0 chr3 134306110 134306288 -83730870 + (TCC)n Simple_repeat Simple_repeat 3 180 0 186 209 23 0 chr3 134306835 134306878 -83730280 - L2 LINE L2 0 3272 3229 590 278 11 22 chr3 134306904 134307084 -83730074 + MER5B DNA MER1_type 1 178 0 181 233 0 23 chr3 134307204 134307247 -83729911 - L2 LINE L2 -9 3263 3222 1184 153 106 33 chr3 134307800 134308101 -83729057 + MER5C DNA MER1_type 2 324 0 2352 107 10 0 chr3 134308193 134308502 -83728656 + AluSx SINE Alu 1 312 0 338 338 72 31 chr3 134308564 134308786 -83728372 - MIR SINE MIR -3 259 29 659 196 127 0 chr3 134309131 134309289 -83727869 - L1MD2 LINE L1 -19 6340 6163 260 327 73 9 chr3 134309298 134309408 -83727750 + L3 LINE CR1 1083 1199 -378 198 262 49 16 chr3 134309456 134309517 -83727641 + L2 LINE L2 3207 3269 -3 226 329 92 58 chr3 134309547 134309875 -83727283 + L3 LINE CR1 1237 1575 -2 469 282 111 14 chr3 134310528 134310744 -83726414 - MIR SINE MIR -6 256 20 216 336 50 0 chr3 134311193 134311312 -83725846 + MIR SINE MIR 58 182 -80 1327 18 37 18 chr3 134311980 134312143 -83725015 - L1PA5 LINE L1 -2 6152 5987 3311 244 48 22 chr3 134312301 134313472 -83723686 - L1ME3A LINE L1 -5 6165 4958 2124 129 0 3 chr3 134314124 134314367 -83722791 - AluSg SINE Alu 0 363 120 207 0 0 0 chr3 134314367 134314390 -83722768 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2124 129 0 3 chr3 134314390 134314510 -83722648 - AluSg SINE Alu -243 120 1 202 180 66 0 chr3 134314651 134314712 -83722446 + T-rich Low_complexity Low_complexity 1 65 0 7919 22 0 3 chr3 134314712 134315777 -83721381 - L1PA3 LINE L1 0 6155 5092 8966 30 3 0 chr3 134315777 134316824 -83720334 + L1PA3 LINE L1 4061 5110 -1036 233 242 0 0 chr3 134316917 134316979 -83720179 - L1ME3A LINE L1 -1233 4913 4852 315 282 159 6 chr3 134318751 134318914 -83718244 - MIR3 SINE MIR -6 202 15 1871 175 0 9 chr3 134320853 134321168 -83715990 - AluJb SINE Alu 0 312 1 804 185 92 16 chr3 134321633 134321817 -83715341 + MLT1C LTR MaLR 6 203 -264 775 135 19 51 chr3 134322601 134322757 -83714401 + L1MB3 LINE L1 6031 6181 -2 21 0 0 0 chr3 134326323 134326344 -83710814 + AT_rich Low_complexity Low_complexity 1 21 0 206 75 100 50 chr3 134326533 134326573 -83710585 + MIR SINE MIR 108 149 -59 422 302 0 8 chr3 134326892 134327021 -83710137 - MER5B DNA MER1_type -6 172 45 816 276 27 69 chr3 134327422 134327884 -83709274 + L2 LINE L2 2792 3227 -86 2008 128 3 24 chr3 134328353 134328674 -83708484 + AluSx SINE Alu 1 315 0 233 328 0 0 chr3 134329058 134329122 -83708036 + MIR3 SINE MIR 124 187 -21 819 191 33 43 chr3 134329330 134329540 -83707618 - MER3 DNA MER1_type -1 208 1 283 274 179 21 chr3 134330598 134330788 -83706370 + MIR SINE MIR 13 232 -30 475 272 72 31 chr3 134331900 134332095 -83705063 - MIR SINE MIR -28 234 32 1687 123 141 11 chr3 134332437 134332713 -83704445 - AluSx SINE Alu 0 312 1 632 278 71 75 chr3 134332789 134333307 -83703851 - MLT1H LTR MaLR -33 516 1 359 269 25 50 chr3 134333584 134333703 -83703455 + MIR SINE MIR 30 145 -63 299 220 66 33 chr3 134334598 134334689 -83702469 - MIR SINE MIR -133 129 36 261 175 153 58 chr3 134334730 134334867 -83702291 + L1ME4a LINE L1 5961 6110 -11 2238 98 0 7 chr3 134335215 134335511 -83701647 - AluSc SINE Alu -12 297 4 1891 166 0 3 chr3 134335756 134336052 -83701106 + AluSx SINE Alu 4 298 -14 188 246 154 46 chr3 134337415 134337545 -83699613 + L2 LINE L2 2245 2388 -926 224 345 69 14 chr3 134338183 134338328 -83698830 + MIR3 SINE MIR 13 165 -43 195 321 24 12 chr3 134339543 134339627 -83697531 + MER5A DNA MER1_type 2 86 -103 2005 137 18 15 chr3 134339780 134339973 -83697185 - MER44D DNA MER2_type -1883 608 417 6227 133 96 17 chr3 134339973 134340426 -83696732 - Tigger3b DNA MER2_type -1798 1230 814 1664 178 10 24 chr3 134340426 134340724 -83696434 + AluJo SINE Alu 1 294 -18 6227 133 96 17 chr3 134340724 134341409 -83695749 - Tigger3b DNA MER2_type -2214 814 2 2005 137 18 15 chr3 134341409 134341551 -83695607 - MER44D DNA MER2_type -2074 417 2 340 319 54 10 chr3 134342117 134342319 -83694839 + MIR SINE MIR 40 253 -9 1581 155 0 72 chr3 134342561 134342839 -83694319 + AluSx SINE Alu 11 268 -44 1501 230 86 45 chr3 134343770 134344257 -83692901 - MLT1F1 LTR MaLR 0 567 61 2080 142 25 71 chr3 134344584 134344779 -83692379 + MLT1B LTR MaLR 1 169 -221 2011 142 93 51 chr3 134344779 134345188 -83691970 - MSTB LTR MaLR 0 426 1 2080 142 25 71 chr3 134345188 134345400 -83691758 + MLT1B LTR MaLR 169 389 -1 702 268 104 4 chr3 134345741 134345972 -83691186 + MIR SINE MIR 8 261 -1 221 171 0 0 chr3 134346384 134346425 -83690733 + L2 LINE L2 3268 3308 -5 2038 161 0 0 chr3 134346608 134346918 -83690240 - AluSq SINE Alu -3 310 1 491 239 181 16 chr3 134347889 134348077 -83689081 + MIR SINE MIR 13 231 -31 198 277 119 20 chr3 134348126 134348227 -83688931 + L2 LINE L2 3198 3308 -5 2105 136 0 3 chr3 134348676 134348984 -83688174 - AluSx SINE Alu -5 307 1 309 75 0 0 chr3 134348985 134349025 -83688133 + THE1B LTR MaLR 325 364 0 218 157 20 59 chr3 134349554 134349605 -83687553 - MER5B DNA MER1_type -5 173 125 607 188 27 34 chr3 134349753 134349902 -83687256 - MER5A DNA MER1_type -10 179 32 2771 186 15 19 chr3 134350275 134350796 -83686362 - LTR40a LTR ERVL 0 519 1 1078 88 0 7 chr3 134351123 134351260 -83685898 + AluSq/x SINE Alu 1 136 -177 2210 112 7 3 chr3 134351260 134351556 -83685602 + AluSc SINE Alu 1 297 -12 732 220 75 23 chr3 134352078 134352251 -83684907 - MLT1H1 LTR MaLR -1 589 408 4434 182 54 17 chr3 134352322 134353140 -83684018 - MER21B LTR ERV1 -15 848 1 917 274 73 26 chr3 134353177 134353556 -83683602 - MLT1H1 LTR MaLR -195 395 1 1702 164 78 60 chr3 134353670 134353810 -83683348 + MLT1B LTR MaLR 1 137 -253 3319 85 23 15 chr3 134353810 134354280 -83682878 + L1MA1 LINE L1 5829 6302 0 1702 164 78 60 chr3 134354280 134354522 -83682636 + MLT1B LTR MaLR 137 390 0 436 278 73 31 chr3 134354699 134354890 -83682268 + LTR33 LTR ERVL 16 214 -307 310 308 46 0 chr3 134354968 134355098 -83682060 + LTR33A LTR ERVL 380 515 -8 412 258 23 64 chr3 134355254 134355518 -83681640 - L1ME4a LINE L1 -56 6065 5813 314 276 124 41 chr3 134355949 134356094 -83681064 + MIR SINE MIR 16 172 -90 667 291 62 4 chr3 134358410 134358654 -83678504 - MIR SINE MIR -2 260 3 359 276 104 41 chr3 134359816 134360051 -83677107 + MIR SINE MIR 1 246 -16 222 316 13 0 chr3 134361131 134361210 -83675948 - L2 LINE L2 0 3313 3234 287 315 110 14 chr3 134361726 134361872 -83675286 + MIR3 SINE MIR 8 167 -41 1902 159 46 17 chr3 134361874 134362219 -83674939 - MLT1A1 LTR MaLR 0 365 11 358 272 119 67 chr3 134362540 134362787 -83674371 + MLT1J LTR MaLR 100 426 -189 254 248 67 29 chr3 134362787 134362892 -83674266 + MLT1J LTR MaLR 390 498 -13 2079 133 0 3 chr3 134363847 134364148 -83673010 - AluJb SINE Alu -6 306 7 313 143 78 52 chr3 134365325 134365402 -83671756 - MIR SINE MIR -116 146 68 1322 188 4 30 chr3 134365445 134365679 -83671479 - MER8 DNA MER2_type -11 228 1 464 235 110 70 chr3 134366728 134366928 -83670230 + MER63A DNA MER1_type 1 208 -2 509 246 39 8 chr3 134366997 134367127 -83670031 + MIR SINE MIR 59 192 -70 1240 269 108 24 chr3 134367698 134368107 -83669051 - MLT1J2 LTR MaLR -2 448 6 637 284 49 22 chr3 134369194 134369419 -83667739 + MIR SINE MIR 24 254 -8 1723 187 0 3 chr3 134370285 134370589 -83666569 + AluJo SINE Alu 1 303 0 1809 112 81 41 chr3 134370825 134371120 -83666038 + AluSx SINE Alu 1 307 -5 504 250 7 42 chr3 134371341 134371485 -83665673 + MIR3 SINE MIR 46 184 -24 700 298 8 36 chr3 134371611 134371859 -83665299 + MIR SINE MIR 16 256 -6 787 150 7 26 chr3 134371860 134372013 -83665145 + MER104 DNA Tc2 1 150 -30 285 236 158 31 chr3 134372769 134372896 -83664262 - MIR SINE MIR -21 241 99 725 306 63 34 chr3 134373782 134374584 -83662574 - L1ME4a LINE L1 -21 6100 5279 419 358 48 24 chr3 134374739 134375153 -83662005 - L1ME4a LINE L1 -1075 5071 4648 183 80 0 0 chr3 134375733 134375758 -83661400 + (TA)n Simple_repeat Simple_repeat 1 25 0 361 236 96 25 chr3 134375793 134375992 -83661166 - L1ME4a LINE L1 -196 5925 5713 212 231 0 0 chr3 134377018 134377057 -83660101 + (CTCA)n Simple_repeat Simple_repeat 1 39 0 483 218 170 14 chr3 134377177 134377324 -83659834 - MIR SINE MIR -70 192 23 373 287 56 7 chr3 134378740 134378883 -83658275 + L2 LINE L2 3160 3309 -4 189 107 0 0 chr3 134379057 134379085 -83658073 + (TG)n Simple_repeat Simple_repeat 1 28 0 180 322 118 66 chr3 134380754 134380965 -83656193 - L2 LINE L2 -23 3249 3028 1978 129 0 0 chr3 134381541 134381845 -83655313 - AluSg SINE Alu 0 304 1 311 288 0 27 chr3 134381962 134381987 -83655171 + CT-rich Low_complexity Low_complexity 2 26 -83 276 30 0 0 chr3 134381987 134382020 -83655138 + (TG)n Simple_repeat Simple_repeat 2 34 0 311 288 0 27 chr3 134382020 134382105 -83655053 + CT-rich Low_complexity Low_complexity 26 109 0 205 278 160 21 chr3 134382968 134383162 -83653996 - L2 LINE L2 -16 3297 3077 190 329 61 30 chr3 134383196 134383360 -83653798 - L2 LINE L2 -780 2534 2366 1863 157 0 11 chr3 134384220 134384507 -83652651 - AluJb SINE Alu -28 284 1 323 208 14 14 chr3 134384536 134384608 -83652550 - MER5A DNA MER1_type -84 105 34 215 310 44 26 chr3 134384750 134384863 -83652295 + L2 LINE L2 3197 3311 -2 1636 112 9 0 chr3 134385875 134386099 -83651059 + MER30 DNA MER1_type 1 226 -4 319 254 0 0 chr3 134389139 134389210 -83647948 - L2 LINE L2 0 3272 3202 369 0 0 0 chr3 134389266 134389307 -83647851 + (T)n Simple_repeat Simple_repeat 1 41 0 349 247 108 0 chr3 134390198 134390291 -83646867 + MER58A DNA MER1_type 3 105 -2 * 1658 201 89 20 chr3 134390288 134390691 -83646467 - MLT1D LTR MaLR 0 505 75 642 202 16 16 chr3 134390720 134390849 -83646309 + MER58A DNA MER1_type 96 224 0 263 354 56 7 chr3 134391486 134391630 -83645528 + L3 LINE CR1 1417 1567 -10 236 122 0 68 chr3 134392410 134392484 -83644674 + (A)n Simple_repeat Simple_repeat 1 69 0 572 204 13 70 chr3 134393188 134393345 -83643813 - MER103 DNA DNA -1 165 18 341 265 76 38 chr3 134396129 134396261 -83640897 - MIR SINE MIR -42 220 84 791 165 87 61 chr3 134396820 134397050 -83640108 + MER106A DNA MER1_type 1 236 0 320 290 80 17 chr3 134397133 134397309 -83639849 - MIR3 SINE MIR -2 206 20 287 333 86 6 chr3 134397765 134397939 -83639219 + L3b LINE CR1 1302 1489 -94 2161 132 0 0 chr3 134398968 134399264 -83637894 - AluSx SINE Alu -16 296 1 200 351 11 11 chr3 134399525 134399619 -83637539 + L3 LINE CR1 206 299 -1278 753 290 147 69 chr3 134399626 134400136 -83637022 + L3 LINE CR1 1022 1571 -6 196 296 0 0 chr3 134400529 134400573 -83636585 - L3 LINE CR1 -18 1559 1516 249 203 17 17 chr3 134400581 134400640 -83636518 - L2 LINE L2 0 3272 3214 1157 256 151 29 chr3 134401925 134402370 -83634788 - LTR33 LTR ERVL -22 499 1 211 315 54 0 chr3 134402376 134402468 -83634690 + MIR SINE MIR 87 183 -79 261 212 15 30 chr3 134402925 134402991 -83634167 + L1ME LINE L1 5824 5888 -282 292 302 137 19 chr3 134403595 134403800 -83633358 - L2 LINE L2 -456 2858 2630 744 250 127 0 chr3 134403827 134404047 -83633111 - MIR SINE MIR 0 262 15 317 308 30 15 chr3 134405348 134405481 -83631677 + MIR SINE MIR 122 256 -6 186 171 0 0 chr3 134405560 134405601 -83631557 + (TTAGGG)n Simple_repeat Simple_repeat 3 43 0 2249 102 3 16 chr3 134405833 134406138 -83631020 - AluSq SINE Alu -12 301 1 458 315 112 4 chr3 134406146 134406413 -83630745 - L1ME4a LINE L1 -188 5933 5638 6076 116 14 35 chr3 134406451 134407475 -83629683 - L1MA4 LINE L1 0 6300 5299 877 135 13 7 chr3 134407529 134407799 -83629359 - L1MA2 LINE L1 -356 5947 5543 26 50 0 0 chr3 134409114 134409154 -83628004 + AT_rich Low_complexity Low_complexity 1 40 0 216 374 30 0 chr3 134411013 134411144 -83626014 - MIR3 SINE MIR 0 208 74 1930 148 3 3 chr3 134412959 134413262 -83623896 - AluJb SINE Alu 0 312 10 472 118 75 11 chr3 134413755 134413848 -83623310 + MER5B DNA MER1_type 1 99 -79 235 341 16 8 chr3 134413921 134414044 -83623114 + MIR3 SINE MIR 82 205 -3 334 239 11 22 chr3 134414583 134414675 -83622483 - MER113 DNA MER1_type? -120 401 311 268 317 16 8 chr3 134415897 134416020 -83621138 + MIR3 SINE MIR 82 205 -3 252 0 0 0 chr3 134416023 134416051 -83621107 + (A)n Simple_repeat Simple_repeat 1 28 0 374 308 97 11 chr3 134416063 134416248 -83620910 + MIR SINE MIR 24 224 -38 265 151 0 0 chr3 134416487 134416540 -83620618 + L2 LINE L2 2910 2962 -310 2366 79 7 0 chr3 134416553 134416844 -83620314 - AluSq SINE Alu -20 293 1 348 242 11 32 chr3 134417011 134417106 -83620052 + L2 LINE L2 3180 3272 0 260 256 131 44 chr3 134418891 134419028 -83618130 + MER5A DNA MER1_type 30 189 0 25 0 0 0 chr3 134419431 134419456 -83617702 + AT_rich Low_complexity Low_complexity 1 25 0 201 236 84 150 chr3 134419880 134420354 -83616804 + L2 LINE L2 1854 2296 -1018 236 280 0 0 chr3 134420382 134420432 -83616726 - MER2 DNA MER2_type 0 345 296 363 175 16 0 chr3 134420471 134420534 -83616624 + MER2 DNA MER2_type 282 345 0 781 253 49 66 chr3 134420606 134421033 -83616125 - LTR16A1 LTR ERVL -35 422 3 413 260 232 0 chr3 134421061 134421238 -83615920 - MIR SINE MIR -32 230 13 658 254 81 16 chr3 134421255 134421503 -83615655 - L2 LINE L2 -38 3275 3012 2327 264 43 39 chr3 134421712 134422380 -83614778 - MER115 DNA AcHobo -1 692 22 952 90 0 8 chr3 134422656 134422778 -83614380 - AluSq/x SINE Alu -179 133 13 560 301 80 14 chr3 134422782 134422995 -83614163 + MIR SINE MIR 22 248 -14 514 257 83 26 chr3 134423479 134423759 -83613399 + L1ME LINE L1 5272 5576 -545 1033 162 6 6 chr3 134425031 134425204 -83611954 + FAM SINE Alu 1 173 -2 1349 165 0 48 chr3 134425600 134425848 -83611310 - MER46A DNA MER2_type 0 236 1 350 266 9 18 chr3 134426501 134426614 -83610544 + L1ME LINE L1 5518 5629 -492 1661 129 22 0 chr3 134426614 134426885 -83610273 - L1MA4 LINE L1 -1 6299 6023 1744 119 8 4 chr3 134426897 134427141 -83610017 - AluSx SINE Alu -14 298 54 206 203 0 17 chr3 134427400 134427459 -83609699 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 2248 88 14 17 chr3 134427512 134427843 -83609315 + AluSx SINE Alu 1 330 0 566 209 76 3 chr3 134428972 134429119 -83608039 - MER5A DNA MER1_type -6 172 9 715 294 6 0 chr3 134429138 134429315 -83607843 + MER5B DNA MER1_type 1 178 0 662 269 50 0 chr3 134429481 134429682 -83607476 - MIR SINE MIR -7 255 45 577 213 218 15 chr3 134431092 134431289 -83605869 - MIR SINE MIR -15 247 11 23 78 0 0 chr3 134432150 134432201 -83604957 + AT_rich Low_complexity Low_complexity 1 51 0 1929 277 18 6 chr3 134432435 134432930 -83604228 + MER115 DNA AcHobo 192 692 -1 580 270 81 16 chr3 134433140 134433388 -83603770 + L2 LINE L2 3012 3275 -38 254 295 188 0 chr3 134433411 134433523 -83603635 + MIR SINE MIR 19 151 -111 259 137 20 20 chr3 134433645 134433696 -83603462 + MIR SINE MIR 94 144 -118 204 265 0 0 chr3 134434652 134434701 -83602457 - MIR SINE MIR -53 209 161 5313 199 156 5 chr3 134434811 134436187 -83600971 + L1MB8 LINE L1 3765 5348 -798 404 213 23 8 chr3 134437205 134437308 -83599850 + AluS SINE Alu 1 78 -225 3293 172 11 58 chr3 134437444 134438099 -83599059 + L1MB8 LINE L1 5485 6169 -9 279 79 0 0 chr3 134438099 134438137 -83599021 + (CATTT)n Simple_repeat Simple_repeat 3 40 0 2281 99 0 0 chr3 134438137 134438419 -83598739 - AluSq SINE Alu -31 282 1 3293 172 11 58 chr3 134438419 134438458 -83598700 + L1MB8 LINE L1 6109 6148 -30 2380 99 7 0 chr3 134438909 134439212 -83597946 + AluSp SINE Alu 1 305 -8 22 35 0 0 chr3 134439303 134439332 -83597826 + AT_rich Low_complexity Low_complexity 1 29 0 723 73 0 0 chr3 134440514 134440610 -83596548 - L1PA6 LINE L1 0 6154 6059 259 281 44 44 chr3 134441846 134441981 -83595177 + L2 LINE L2 2925 3059 -213 614 232 120 105 chr3 134442221 134442678 -83594480 - MLT1L LTR MaLR -8 607 144 720 177 50 100 chr3 134442822 134442866 -83594292 - MER3 DNA MER1_type 0 209 164 641 167 23 30 chr3 134442866 134442998 -83594160 + L1PB4 LINE L1 6026 6156 0 720 177 50 100 chr3 134442998 134443031 -83594127 - MER3 DNA MER1_type -45 164 131 2260 101 0 0 chr3 134443031 134443317 -83593841 - AluSq SINE Alu -27 286 1 720 177 50 100 chr3 134443317 134443458 -83593700 - MER3 DNA MER1_type -78 131 1 1033 59 5 43 chr3 134443544 134443731 -83593427 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 282 224 0 17 chr3 134443739 134443797 -83593361 + CT-rich Low_complexity Low_complexity 3 59 0 1470 132 0 35 chr3 134443801 134444028 -83593130 - AluSg SINE Alu -87 223 5 2263 99 0 3 chr3 134444743 134445049 -83592109 - AluSx SINE Alu 0 305 1 45 34 0 0 chr3 134445139 134445198 -83591960 + AT_rich Low_complexity Low_complexity 1 59 0 645 174 0 25 chr3 134445437 134445558 -83591600 - FLAM_C SINE Alu -7 136 19 39 22 0 0 chr3 134445562 134445608 -83591550 + AT_rich Low_complexity Low_complexity 1 46 0 198 0 0 0 chr3 134447021 134447043 -83590115 + (T)n Simple_repeat Simple_repeat 1 22 0 306 305 170 14 chr3 134447068 134447209 -83589949 + MER5A DNA MER1_type 27 189 0 369 0 0 0 chr3 134448412 134448453 -83588705 + (CA)n Simple_repeat Simple_repeat 1 41 0 547 227 135 31 chr3 134448990 134449153 -83588005 + MER5A DNA MER1_type 10 189 0 625 224 73 22 chr3 134449158 134449337 -83587821 + MIR SINE MIR 15 202 -60 1764 77 7 0 chr3 134449337 134449607 -83587551 + L1PB1 LINE L1 5709 6151 0 21 0 0 0 chr3 134449625 134449646 -83587512 + AT_rich Low_complexity Low_complexity 1 21 0 1293 287 78 7 chr3 134450164 134450849 -83586309 - L2 LINE L2 -71 3242 2503 1468 187 141 20 chr3 134451847 134452031 -83585127 + MSTB LTR MaLR 4 164 -262 1780 156 22 0 chr3 134452031 134452307 -83584851 + AluJb SINE Alu 1 282 -30 1468 187 141 20 chr3 134452307 134452469 -83584689 + MSTB LTR MaLR 164 392 -34 4211 51 0 0 chr3 134452469 134452978 -83584180 - L1PA5 LINE L1 0 6154 5646 722 37 0 0 chr3 134452979 134453061 -83584097 + L1PA5 LINE L1 5554 5635 -519 244 103 26 0 chr3 134453063 134453102 -83584056 + MSTB LTR MaLR 417 456 -1 325 233 29 82 chr3 134453222 134453351 -83583807 + MER5B DNA MER1_type 66 178 0 534 217 17 8 chr3 134454037 134454157 -83583001 - L2 LINE L2 -5 3308 3188 435 310 91 20 chr3 134455209 134455406 -83581752 - MIR SINE MIR -50 212 2 3781 187 58 36 chr3 134455588 134456495 -83580663 + MER63C DNA MER1_type 1 927 -3 278 138 15 77 chr3 134456495 134456560 -83580598 + MIR SINE MIR 84 144 -118 217 245 0 0 chr3 134457511 134457560 -83579598 - MIR SINE MIR -53 209 161 1141 259 131 5 chr3 134458959 134459326 -83577832 - LTR16C LTR ERVL 0 491 79 343 258 50 25 chr3 134459636 134459756 -83577402 + L3 LINE CR1 1343 1465 -112 220 195 102 119 chr3 134459730 134459848 -83577310 - L2 LINE L2 -2 3270 3155 * 419 225 178 2 chr3 134460808 134460953 -83576205 + MIR3 SINE MIR 18 187 -21 345 273 83 30 chr3 134462779 134462911 -83574247 - MIR SINE MIR -112 150 12 531 180 141 0 chr3 134463050 134463178 -83573980 - Charlie4a DNA MER1_type 0 508 363 1038 189 22 3 chr3 134463180 134463423 -83573735 + L1PA16 LINE L1 5886 6168 0 1234 203 84 13 chr3 134463457 134463767 -83573391 - Charlie4a DNA MER1_type -176 332 1 809 135 68 14 chr3 134464708 134464856 -83572302 - L1MA10 LINE L1 -2 6332 6177 226 288 0 14 chr3 134466783 134466856 -83570302 + MIR SINE MIR 159 230 -32 207 265 108 0 chr3 134467937 134468020 -83569138 - MIR3 SINE MIR -35 173 82 201 274 0 0 chr3 134468187 134468249 -83568909 + (CACG)n Simple_repeat Simple_repeat 2 63 0 288 0 0 0 chr3 134469253 134469285 -83567873 + (TG)n Simple_repeat Simple_repeat 1 32 0 192 241 93 0 chr3 134469316 134469370 -83567788 - L2 LINE L2 0 3272 3214 279 0 0 0 chr3 134469715 134469746 -83567412 + (TG)n Simple_repeat Simple_repeat 1 31 0 220 204 93 0 chr3 134469777 134469831 -83567327 - L2 LINE L2 0 3272 3214 21 57 0 0 chr3 134469918 134469953 -83567205 + AT_rich Low_complexity Low_complexity 1 35 0 459 293 75 6 chr3 134470414 134470588 -83566570 + MIR SINE MIR 21 206 -56 286 242 28 129 chr3 134470854 134471102 -83566056 - L2 LINE L2 -179 3093 2871 337 297 76 58 chr3 134471253 134471647 -83565511 - L2 LINE L2 -665 2649 2249 215 186 47 0 chr3 134472750 134472793 -83564365 + (CATG)n Simple_repeat Simple_repeat 3 47 0 307 236 75 0 chr3 134472807 134472896 -83564262 + MIR SINE MIR 41 136 -72 1196 125 0 0 chr3 134473122 134473290 -83563868 + AluSg/x SINE Alu 145 312 0 204 182 0 0 chr3 134473725 134473769 -83563389 + CT-rich Low_complexity Low_complexity 1 44 0 225 0 0 0 chr3 134473848 134473873 -83563285 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 217 263 36 66 chr3 134474822 134474959 -83562199 + MIR SINE MIR 80 212 -50 976 242 0 62 chr3 134476983 134477256 -83559902 - MIR SINE MIR -3 259 4 366 267 79 30 chr3 134477935 134478100 -83559058 - MIR SINE MIR -25 237 65 485 281 35 78 chr3 134478201 134478432 -83558726 - MIR SINE MIR -30 232 12 1053 162 222 65 chr3 134478487 134478857 -83558301 + MSTC LTR MaLR 1 428 0 1993 135 0 10 chr3 134479628 134479925 -83557233 + AluSx SINE Alu 1 294 -18 660 57 28 0 chr3 134479926 134480032 -83557126 + (TA)n Simple_repeat Simple_repeat 1 109 0 324 306 67 83 chr3 134480193 134481032 -83556126 + L1MEc LINE L1 135 893 -5312 4228 240 43 64 chr3 134481177 134483158 -83554000 - L1MEc LINE L1 -2553 3662 1734 2645 252 22 26 chr3 134483162 134484119 -83553039 - L1M4c LINE L1 -4428 2710 1618 1343 172 5 0 chr3 134484135 134484339 -83552819 + AluJb SINE Alu 86 290 -22 5182 221 89 55 chr3 134484353 134485897 -83551261 - L1M4c LINE L1 -5254 1605 9 352 296 37 37 chr3 134485981 134486116 -83551042 - MER5A DNA MER1_type -15 174 40 306 0 0 0 chr3 134486262 134486296 -83550862 + (TG)n Simple_repeat Simple_repeat 2 35 0 2051 164 5 54 chr3 134487377 134487786 -83549372 + MLT1B LTR MaLR 1 389 -1 299 282 188 0 chr3 134488164 134488281 -83548877 + L2 LINE L2 3134 3272 0 188 167 0 37 chr3 134488538 134488592 -83548566 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 198 274 65 0 chr3 134489665 134489727 -83547431 + L2 LINE L2 2682 2747 -567 953 263 43 71 chr3 134489727 134490123 -83547035 + MLT1I LTR MaLR 1 385 -24 263 141 62 31 chr3 134490195 134490259 -83546899 + HSMAR1 DNA Mariner 1222 1287 0 802 204 34 0 chr3 134490681 134490857 -83546301 - MIR SINE MIR -7 255 74 552 299 116 3 chr3 134490856 134491167 -83545991 - L3 LINE CR1 -85 1492 1147 * 439 293 123 75 chr3 134492237 134492732 -83544426 + MLT1K LTR MaLR 38 556 -32 309 247 22 11 chr3 134492748 134492837 -83544321 - L3 LINE CR1 -277 1300 1211 216 128 0 0 chr3 134494584 134494602 -83542556 + (ATG)n Simple_repeat Simple_repeat 2 19 -21 2499 118 0 27 chr3 134494602 134494976 -83542182 - THE1B LTR MaLR 0 364 1 216 128 0 0 chr3 134494976 134494996 -83542162 + (ATG)n Simple_repeat Simple_repeat 18 40 0 652 226 24 12 chr3 134495018 134495182 -83541976 - MIR SINE MIR -34 228 63 2334 91 3 13 chr3 134495306 134495613 -83541545 + AluSq SINE Alu 3 306 -7 390 288 76 0 chr3 134495613 134495734 -83541424 - L2 LINE L2 -17 3255 3122 183 42 0 0 chr3 134496484 134496508 -83540650 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1827 129 0 0 chr3 134496511 134496759 -83540399 - AluSx SINE Alu -30 282 35 14401 85 20 14 chr3 134498464 134500528 -83536630 - L1P LINE L1 -1617 4529 2454 434 281 45 56 chr3 134500621 134500799 -83536359 + MER5A DNA MER1_type 7 182 -7 264 277 45 18 chr3 134501759 134501871 -83535287 - L2 LINE L2 -65 3248 3134 1864 178 3 7 chr3 134501938 134502241 -83534917 + AluSx SINE Alu 1 302 -10 2283 122 0 3 chr3 134502371 134502683 -83534475 + AluSx SINE Alu 1 311 -1 191 344 0 16 chr3 134503369 134503433 -83533725 - L2 LINE L2 -9 3263 3201 243 0 0 0 chr3 134503849 134503876 -83533282 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2292 175 24 0 chr3 134503879 134504290 -83532868 - L1PB4 LINE L1 -12 6144 5724 374 266 84 14 chr3 134504744 134504876 -83532282 + L2 LINE L2 2567 2711 -603 1585 184 21 11 chr3 134504876 134505158 -83532000 - AluJo SINE Alu -27 285 1 326 322 98 42 chr3 134505337 134505623 -83531535 + L2 LINE L2 2968 3269 -3 423 0 0 0 chr3 134508969 134509016 -83528142 + (TG)n Simple_repeat Simple_repeat 2 48 0 297 0 0 0 chr3 134509066 134509099 -83528059 + (TG)n Simple_repeat Simple_repeat 2 34 0 3912 114 38 38 chr3 134510263 134510423 -83526735 + L1MB3 LINE L1 5520 5679 -504 2245 97 7 3 chr3 134510423 134510713 -83526445 - AluSx SINE Alu -21 291 1 3912 114 38 38 chr3 134510713 134511043 -83526115 + L1MB3 LINE L1 5679 6013 -170 1453 82 106 0 chr3 134511043 134511251 -83525907 - MER30 DNA MER1_type 0 230 1 3912 114 38 38 chr3 134511251 134511423 -83525735 + L1MB3 LINE L1 6012 6183 0 375 309 40 6 chr3 134512058 134512233 -83524925 - MIR SINE MIR -81 181 1 2368 67 0 0 chr3 134514418 134514717 -83522441 + L1PA6 LINE L1 5852 6150 -4 421 291 216 35 chr3 134516958 134517360 -83519798 + L3 LINE CR1 993 1467 -110 2327 115 3 0 chr3 134517404 134517709 -83519449 - AluSx SINE Alu -6 306 1 226 306 43 121 chr3 134517760 134518015 -83519143 + L2 LINE L2 1713 1925 -1389 2372 105 3 3 chr3 134518015 134518328 -83518830 - AluSq SINE Alu 0 313 1 226 306 43 121 chr3 134518328 134518487 -83518671 + L2 LINE L2 1925 2095 -1219 889 145 7 20 chr3 134518641 134518793 -83518365 - AluSq/x SINE Alu -162 150 1 546 336 111 44 chr3 134518803 134520024 -83517134 + L2 LINE L2 1945 3245 -27 272 316 13 0 chr3 134520040 134520116 -83517042 + L3 LINE CR1 1486 1562 -15 834 266 23 19 chr3 134520793 134521049 -83516109 - MIR SINE MIR 0 262 6 381 356 131 0 chr3 134521679 134521901 -83515257 + MIR SINE MIR 5 255 -7 340 234 331 0 chr3 134523149 134523333 -83513825 - MIR SINE MIR -1 261 17 181 256 0 22 chr3 134523943 134524033 -83513125 + (TGG)n Simple_repeat Simple_repeat 3 90 0 195 129 0 0 chr3 134524068 134524099 -83513059 + (TCC)n Simple_repeat Simple_repeat 3 33 0 585 136 24 32 chr3 134525150 134525275 -83511883 + L1MA4 LINE L1 6176 6299 -1 206 286 0 0 chr3 134525568 134525617 -83511541 + MIR SINE MIR 103 151 -111 6698 57 3 27 chr3 134528355 134529213 -83507945 - SVA Other Other 0 1386 549 569 88 7 52 chr3 134529226 134529362 -83507796 - SVA Other Other -592 794 665 2873 221 23 24 chr3 134529485 134530336 -83506822 + L1MEc LINE L1 2154 2971 -3244 421 264 54 30 chr3 134530364 134530531 -83506627 - MIR SINE MIR -32 230 60 1602 189 118 3 chr3 134533298 134533620 -83503538 - MLT1A1 LTR MaLR -3 362 4 1006 176 5 32 chr3 134533685 134533749 -83503409 - MER20 DNA MER1_type 0 219 155 2258 189 35 18 chr3 134533749 134534205 -83502953 + MLT1C LTR MaLR 3 466 -1 1006 176 5 32 chr3 134534205 134534327 -83502831 - MER20 DNA MER1_type -64 155 38 232 259 9 107 chr3 134534592 134534704 -83502454 + MER5B DNA MER1_type 62 162 -16 268 264 62 114 chr3 134534887 134535114 -83502044 + L1ME4a LINE L1 5719 5933 -188 3660 93 15 4 chr3 134535469 134535998 -83501160 + L1MA1 LINE L1 5767 6301 -1 1399 138 0 77 chr3 134536097 134536357 -83500801 + L1MA8 LINE L1 5534 5773 -527 8386 113 31 10 chr3 134536360 134537628 -83499530 + HSMAR2 DNA Mariner 1 1295 -7 2384 134 36 61 chr3 134537629 134538188 -83498970 + L1MA8 LINE L1 5776 6287 -4 234 0 0 0 chr3 134538568 134538594 -83498564 + (TCTCCC)n Simple_repeat Simple_repeat 1 26 0 5287 30 17 207 chr3 134538599 134539623 -83497535 + SVA Other Other 38 866 -520 1346 52 0 28 chr3 134539637 134539849 -83497309 + SVA Other Other 661 866 -520 815 51 0 26 chr3 134539866 134540022 -83497136 + SVA Other Other 665 816 -570 5264 240 85 8 chr3 134540122 134540622 -83496536 - L1MEc LINE L1 -4281 2115 1655 203 61 30 0 chr3 134540622 134540655 -83496503 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 5264 240 85 8 chr3 134540655 134541710 -83495448 - L1MEc LINE L1 -4741 1655 440 191 313 12 12 chr3 134542226 134542306 -83494852 + L3b LINE CR1 1294 1373 -210 645 314 95 49 chr3 134542889 134543489 -83493669 - L2 LINE L2 0 3272 2643 418 363 60 5 chr3 134543661 134543876 -83493282 - L2 LINE L2 -5 3267 3041 875 272 39 9 chr3 134543972 134544204 -83492954 + MIR SINE MIR 24 262 0 455 255 92 0 chr3 134544411 134544509 -83492649 + MER81 DNA DNA 8 114 0 2484 197 8 34 chr3 134545234 134545712 -83491446 - MLT1C LTR MaLR -1 466 1 506 305 37 18 chr3 134548463 134548627 -83488531 + MIR3 SINE MIR 37 203 -5 24 0 0 0 chr3 134548663 134548687 -83488471 + AT_rich Low_complexity Low_complexity 1 24 0 352 299 73 0 chr3 134548792 134548929 -83488229 - MIR SINE MIR -59 203 57 227 247 26 13 chr3 134548954 134549031 -83488127 + T-rich Low_complexity Low_complexity 5 82 0 441 319 7 21 chr3 134549378 134549520 -83487638 - MIR SINE MIR -67 141 9 246 208 0 0 chr3 134549925 134549978 -83487180 + (TATATG)n Simple_repeat Simple_repeat 3 55 0 211 178 111 0 chr3 134550441 134550486 -83486672 + L2 LINE L2 3261 3310 -3 212 122 24 0 chr3 134551069 134551110 -83486048 + CT-rich Low_complexity Low_complexity 4 45 0 577 283 121 5 chr3 134551477 134551700 -83485458 + L1ME4a LINE L1 5698 5946 -175 1308 149 4 60 chr3 134553984 134554219 -83482939 - AluJb SINE Alu -4 308 87 744 218 0 32 chr3 134554320 134554476 -83482682 - MIR SINE MIR -59 203 53 1361 111 11 0 chr3 134554536 134554726 -83482432 - AluSg/x SINE Alu 0 310 119 1829 5 0 0 chr3 134554731 134554924 -83482234 - L1PA2 LINE L1 -3 6152 5960 2108 124 0 0 chr3 134554925 134555207 -83481951 - AluSx SINE Alu -30 282 1 297 200 59 71 chr3 134555618 134555703 -83481455 - MIR SINE MIR -74 188 105 262 376 22 34 chr3 134555982 134556160 -83480998 - MIR3 SINE MIR -14 194 19 341 253 116 0 chr3 134558465 134558560 -83478598 + MIR3 SINE MIR 93 198 -10 379 288 64 0 chr3 134559937 134560062 -83477096 - MIR SINE MIR -109 153 21 217 214 0 36 chr3 134560471 134560527 -83476631 + L2 LINE L2 3217 3270 -2 2232 92 4 0 chr3 134561047 134561379 -83475779 - AluSx SINE Alu 0 333 1 27 0 0 0 chr3 134562425 134562452 -83474706 + AT_rich Low_complexity Low_complexity 1 27 0 1910 174 0 0 chr3 134563164 134563474 -83473684 + AluJb SINE Alu 1 310 -2 241 219 184 9 chr3 134564408 134564522 -83472636 + L1ME4a LINE L1 5987 6120 -1 286 202 53 53 chr3 134564552 134564646 -83472512 - Charlie7 DNA MER1_type 0 2612 2519 1559 214 120 44 chr3 134564657 134565156 -83472002 - Charlie7 DNA MER1_type -1928 684 148 266 311 22 22 chr3 134565689 134565779 -83471379 - L2 LINE L2 -4 3268 3179 195 194 48 97 chr3 134565935 134565997 -83471161 - L3 LINE CR1 -87 1490 1432 192 263 66 132 chr3 134566039 134566191 -83470967 - L3 LINE CR1 -206 1371 1230 22 0 0 0 chr3 134566645 134566667 -83470491 + AT_rich Low_complexity Low_complexity 1 22 0 328 336 170 13 chr3 134566696 134567008 -83470150 - L3 LINE CR1 -941 636 276 2446 76 7 3 chr3 134567586 134567889 -83469269 - AluY SINE Alu -7 304 1 762 287 11 58 chr3 134568682 134568778 -83468380 + MIR SINE MIR 14 113 -149 2109 109 34 7 chr3 134568778 134569072 -83468086 - AluSx SINE Alu -10 302 1 762 287 11 58 chr3 134569072 134569236 -83467922 + MIR SINE MIR 113 262 0 26 64 0 0 chr3 134569237 134569284 -83467874 + AT_rich Low_complexity Low_complexity 1 47 0 472 125 159 0 chr3 134569639 134569727 -83467431 + U6 snRNA snRNA 1 102 -5 2312 62 41 3 chr3 134569729 134570021 -83467137 - AluY SINE Alu -8 303 1 231 61 0 0 chr3 134570197 134570230 -83466928 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 378 229 309 21 chr3 134570334 134570522 -83466636 + MIR SINE MIR 5 246 -16 4001 213 17 24 chr3 134572377 134573316 -83463842 + L1ME2 LINE L1 5227 6161 -3 1770 164 13 20 chr3 134573384 134573689 -83463469 - AluJo SINE Alu -7 305 3 353 302 118 24 chr3 134574776 134574945 -83462213 + MIR3 SINE MIR 3 187 -21 226 293 0 94 chr3 134575022 134575128 -83462030 + MIR SINE MIR 93 188 -74 263 320 56 32 chr3 134575727 134575769 -83461389 - MIR3 SINE MIR -40 168 128 1914 144 34 0 chr3 134575769 134576061 -83461097 + AluSq SINE Alu 1 302 -11 263 320 56 32 chr3 134576061 134576143 -83461015 - MIR3 SINE MIR -80 128 41 453 311 31 31 chr3 134577122 134577283 -83459875 - MER5B DNA MER1_type -17 161 1 479 293 0 0 chr3 134577338 134577444 -83459714 + MER5A DNA MER1_type 1 106 -83 332 130 19 0 chr3 134577647 134577701 -83459457 + MER5A DNA MER1_type 114 168 -21 470 281 157 7 chr3 134577725 134577878 -83459280 + MER5A DNA MER1_type 14 189 0 402 289 52 21 chr3 134579132 134579291 -83457867 + MIR3 SINE MIR 36 200 -8 23 33 0 0 chr3 134579533 134579563 -83457595 + AT_rich Low_complexity Low_complexity 1 30 0 409 302 37 37 chr3 134579624 134579813 -83457345 + MIR SINE MIR 47 235 -27 270 289 58 58 chr3 134579886 134579990 -83457168 + L2 LINE L2 3165 3268 -4 21 0 0 0 chr3 134580091 134580112 -83457046 + AT_rich Low_complexity Low_complexity 1 21 0 743 207 65 12 chr3 134580194 134580363 -83456795 - MER5B DNA MER1_type 0 178 1 215 225 0 0 chr3 134580432 134580472 -83456686 + GA-rich Low_complexity Low_complexity 5 44 0 589 233 0 0 chr3 134580756 134580885 -83456273 - MER5B DNA MER1_type 0 178 50 976 89 0 22 chr3 134580897 134581032 -83456126 + AluSg/x SINE Alu 166 297 -15 469 183 153 15 chr3 134581258 134581395 -83455763 - MIR SINE MIR -24 238 83 285 348 43 0 chr3 134581493 134581608 -83455550 - L2 LINE L2 -1 3271 3152 397 156 15 118 chr3 134583407 134583542 -83453616 - MIR SINE MIR -56 206 86 241 253 40 30 chr3 134585073 134585172 -83451986 - MLT1J1 LTR MaLR 0 446 347 1757 173 20 10 chr3 134585539 134585839 -83451319 + AluJo SINE Alu 1 303 -9 297 236 142 0 chr3 134585956 134586062 -83451096 - MIR SINE MIR -57 205 85 274 280 92 43 chr3 134586734 134586927 -83450231 - MIR SINE MIR -60 202 2 2113 140 104 2 chr3 134586957 134587350 -83449808 + L1MA5 LINE L1 5864 6296 -4 196 244 0 22 chr3 134589750 134589795 -83447363 - MIR3 SINE MIR -14 194 151 393 285 60 26 chr3 134589854 134590005 -83447153 - MIR SINE MIR -50 212 57 398 231 202 40 chr3 134590325 134590498 -83446660 - MIR SINE MIR -55 207 7 190 346 40 40 chr3 134591964 134592065 -83445093 - L2 LINE L2 -29 3284 3184 1981 146 3 17 chr3 134594074 134594376 -83442782 + AluSx SINE Alu 1 298 -14 204 133 50 0 chr3 134595170 134595230 -83441928 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 1764 157 19 41 chr3 134595255 134595573 -83441585 + AluJo SINE Alu 1 311 -1 354 173 14 62 chr3 134596754 134596871 -83440287 - MLT1F LTR MaLR 0 529 350 293 226 120 45 chr3 134597036 134597169 -83439989 - MLT1I LTR MaLR -266 143 1 1745 200 38 68 chr3 134597692 134598161 -83438997 + L1ME2 LINE L1 4548 5002 -1144 197 217 0 22 chr3 134598208 134598254 -83438904 + MIR SINE MIR 86 130 -78 2338 110 0 0 chr3 134599412 134599721 -83437437 + AluSx SINE Alu 1 309 -3 453 137 76 12 chr3 134599858 134599987 -83437171 + MER2 DNA MER2_type 12 210 -135 370 240 13 0 chr3 134600015 134600090 -83437068 + MER2 DNA MER2_type 270 345 0 284 241 209 25 chr3 134600631 134600789 -83436369 + L2 LINE L2 2153 2339 -975 432 168 30 0 chr3 134601105 134601206 -83435952 + CT-rich Low_complexity Low_complexity 2 105 0 339 25 0 0 chr3 134601206 134601246 -83435912 + (CA)n Simple_repeat Simple_repeat 1 40 0 48 32 0 0 chr3 134602588 134602650 -83434508 + AT_rich Low_complexity Low_complexity 1 62 0 710 284 15 5 chr3 134603548 134603749 -83433409 + AluJo SINE Alu 1 203 -109 1308 149 4 60 chr3 134605041 134605276 -83431882 - AluJb SINE Alu -4 308 87 744 218 0 32 chr3 134605377 134605533 -83431625 - MIR SINE MIR -59 203 53 1373 111 11 0 chr3 134605593 134605783 -83431375 - AluSg/x SINE Alu 0 312 121 1815 10 0 0 chr3 134605788 134605981 -83431177 - L1PA2 LINE L1 -3 6152 5960 2061 78 14 14 chr3 134605982 134606263 -83430895 - AluY SINE Alu -30 281 1 231 61 0 0 chr3 134606438 134606471 -83430687 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 378 229 309 21 chr3 134606575 134606763 -83430395 + MIR SINE MIR 5 246 -16 4001 213 17 24 chr3 134608618 134609557 -83427601 + L1ME2 LINE L1 5227 6161 -3 1813 161 13 19 chr3 134609624 134609934 -83427224 - AluJo SINE Alu -2 310 3 353 302 118 24 chr3 134611021 134611190 -83425968 + MIR3 SINE MIR 3 187 -21 226 293 0 94 chr3 134611267 134611373 -83425785 + MIR SINE MIR 93 188 -74 263 320 56 32 chr3 134611972 134612014 -83425144 - MIR3 SINE MIR -40 168 128 1914 144 34 0 chr3 134612014 134612306 -83424852 + AluSq SINE Alu 1 302 -11 263 320 56 32 chr3 134612306 134612388 -83424770 - MIR3 SINE MIR -80 128 41 453 311 31 31 chr3 134613367 134613528 -83423630 - MER5B DNA MER1_type -17 161 1 479 293 0 0 chr3 134613583 134613689 -83423469 + MER5A DNA MER1_type 1 106 -83 332 130 19 0 chr3 134613892 134613946 -83423212 + MER5A DNA MER1_type 114 168 -21 470 281 157 7 chr3 134613970 134614123 -83423035 + MER5A DNA MER1_type 14 189 0 1082 170 0 0 chr3 134615145 134615316 -83421842 + AluJb SINE Alu 142 312 0 414 255 0 0 chr3 134615840 134615942 -83421216 + MER3 DNA MER1_type 107 208 -1 426 250 19 0 chr3 134616084 134616188 -83420970 + MER5A DNA MER1_type 4 109 -80 1717 171 7 0 chr3 134616196 134616471 -83420687 + AluJo SINE Alu 34 310 -2 305 271 31 47 chr3 134617837 134617966 -83419192 - MLT1H LTR MaLR -394 155 29 1895 138 32 32 chr3 134617977 134618289 -83418869 + AluJb SINE Alu 1 312 0 523 243 53 101 chr3 134618514 134618703 -83418455 + MIR SINE MIR 14 193 -69 180 328 83 59 chr3 134621879 134622132 -83415026 + L2 LINE L2 2804 3062 -210 4100 162 15 7 chr3 134623048 134623766 -83413392 - L1MB7 LINE L1 -67 6117 5394 2074 123 3 10 chr3 134624026 134624327 -83412831 - AluSq SINE Alu -14 299 1 191 188 21 0 chr3 134624717 134624765 -83412393 + GA-rich Low_complexity Low_complexity 4 52 0 310 309 135 8 chr3 134625783 134625909 -83411249 - L2 LINE L2 0 3313 3172 242 274 137 32 chr3 134627712 134627836 -83409322 + MIR3 SINE MIR 1 137 -71 881 221 45 10 chr3 134627992 134628075 -83409083 - MIR SINE MIR -15 247 168 1935 159 26 40 chr3 134628075 134628421 -83408737 - MER2 DNA MER2_type -3 341 1 881 221 45 10 chr3 134628421 134628536 -83408622 - MIR SINE MIR -94 168 42 2389 97 0 10 chr3 134630529 134630837 -83406321 - AluSx SINE Alu -7 305 1 2292 97 3 13 chr3 134631012 134631320 -83405838 - AluSx SINE Alu -7 305 1 404 326 82 26 chr3 134631506 134631739 -83405419 - MIR SINE MIR -7 255 10 2534 81 0 0 chr3 134631944 134632254 -83404904 + AluSx SINE Alu 1 310 -2 206 235 20 0 chr3 134632256 134632307 -83404851 + CT-rich Low_complexity Low_complexity 5 56 0 1849 150 26 20 chr3 134632606 134632912 -83404246 + AluSx SINE Alu 1 308 -4 1695 214 186 5 chr3 134633830 134634223 -83402935 - MLT1C LTR MaLR 0 467 4 203 315 0 0 chr3 134634510 134634564 -83402594 - L2 LINE L2 -2 3270 3217 1464 204 85 13 chr3 134635011 134635329 -83401829 + MER58B DNA MER1_type 1 341 0 1365 139 5 5 chr3 134637421 134637629 -83399529 + MER3 DNA MER1_type 2 209 0 189 0 0 0 chr3 134638810 134638831 -83398327 + (A)n Simple_repeat Simple_repeat 1 21 0 207 255 0 20 chr3 134639291 134639342 -83397816 + L2 LINE L2 3264 3313 0 417 20 0 0 chr3 134639989 134640039 -83397119 + (TG)n Simple_repeat Simple_repeat 1 50 0 223 319 44 22 chr3 134640582 134640764 -83396394 - MIR3 SINE MIR -3 205 20 222 344 8 15 chr3 134641746 134641877 -83395281 + GA-rich Low_complexity Low_complexity 2 131 0 284 100 0 20 chr3 134641893 134641943 -83395215 + (TAGG)n Simple_repeat Simple_repeat 3 51 0 534 239 60 69 chr3 134642071 134642289 -83394869 + MER112 DNA MER1_type 3 218 -42 329 271 150 14 chr3 134642549 134642689 -83394469 - MIR3 SINE MIR -1 207 49 29 0 0 0 chr3 134644044 134644073 -83393085 + AT_rich Low_complexity Low_complexity 1 29 0 412 264 93 0 chr3 134644776 134644916 -83392242 - MER103 DNA DNA -11 155 3 1840 81 21 8 chr3 134645203 134645483 -83391675 - AluSq SINE Alu 0 328 46 2168 73 0 14 chr3 134645655 134645930 -83391228 + AluY SINE Alu 29 299 -12 907 119 0 0 chr3 134646353 134646471 -83390687 + FLAM_C SINE Alu 1 118 -25 29 28 0 0 chr3 134646471 134646507 -83390651 + AT_rich Low_complexity Low_complexity 1 36 0 414 85 0 0 chr3 134646507 134646566 -83390592 + (TG)n Simple_repeat Simple_repeat 2 60 0 505 284 102 13 chr3 134647446 134647809 -83389349 - L1MC4a LINE L1 -303 5818 5536 21 0 0 0 chr3 134648258 134648279 -83388879 + AT_rich Low_complexity Low_complexity 1 21 0 965 115 12 42 chr3 134649033 134649198 -83387960 - L1MA1 LINE L1 -1 6301 6142 589 209 7 22 chr3 134650332 134650471 -83386687 + MIR SINE MIR 112 248 -14 464 259 26 0 chr3 134651690 134651806 -83385352 + MER5A DNA MER1_type 70 188 -1 472 254 32 0 chr3 134651839 134651965 -83385193 - MER5B DNA MER1_type -48 130 1 2697 43 0 0 chr3 134653715 134654019 -83383139 - AluY SINE Alu -7 304 1 24 0 0 0 chr3 134654354 134654378 -83382780 + AT_rich Low_complexity Low_complexity 1 24 0 1986 175 18 31 chr3 134654517 134654973 -83382185 - L1MB7 LINE L1 -2 6182 5733 398 222 0 12 chr3 134654974 134655055 -83382103 - L1MB7 LINE L1 -505 5679 5600 197 261 0 0 chr3 134655057 134655103 -83382055 + L2 LINE L2 2604 2649 -665 2170 117 3 7 chr3 134655178 134655503 -83381655 - AluJo SINE Alu 0 312 1 2159 129 0 3 chr3 134657266 134657561 -83379597 + AluSx SINE Alu 2 295 -17 2051 142 26 0 chr3 134658814 134659116 -83378042 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr3 134659562 134659583 -83377575 + AT_rich Low_complexity Low_complexity 1 21 0 2261 122 0 0 chr3 134659590 134659886 -83377272 + AluSx SINE Alu 1 296 -16 398 315 7 14 chr3 134661433 134661576 -83375582 + MIR3 SINE MIR 3 144 -64 232 233 0 0 chr3 134661960 134662003 -83375155 + (GGTTG)n Simple_repeat Simple_repeat 4 46 0 180 125 0 0 chr3 134662684 134662716 -83374442 + (CA)n Simple_repeat Simple_repeat 1 32 0 679 94 0 68 chr3 134662745 134662862 -83374296 - L1MB3 LINE L1 0 6183 6075 2155 89 0 0 chr3 134663054 134663325 -83373833 + AluSx SINE Alu 38 308 -4 768 181 22 55 chr3 134663695 134663877 -83373281 + MER5A DNA MER1_type 9 184 -5 1428 176 42 0 chr3 134663978 134664216 -83372942 + AluJo SINE Alu 1 248 -64 23 0 0 0 chr3 134664216 134664239 -83372919 + AT_rich Low_complexity Low_complexity 1 23 0 190 327 0 0 chr3 134667049 134667104 -83370054 - L2 LINE L2 -8 3264 3210 255 222 0 32 chr3 134668695 134668758 -83368400 + (CATA)n Simple_repeat Simple_repeat 2 62 0 2013 132 26 7 chr3 134669446 134669750 -83367408 + AluSx SINE Alu 1 310 -2 525 131 0 0 chr3 134669945 134670029 -83367129 + (TA)n Simple_repeat Simple_repeat 1 84 0 438 294 95 2 chr3 134672002 134672153 -83365005 - MIR3 SINE MIR -62 146 5 184 293 0 0 chr3 134672248 134672289 -83364869 - L2 LINE L2 -27 3286 3246 324 296 113 14 chr3 134672327 134672469 -83364689 + L2 LINE L2 3117 3272 0 350 243 134 7 chr3 134673261 134673396 -83363762 + MIR SINE MIR 36 191 -71 460 221 16 16 chr3 134673684 134673806 -83363352 - L1MC4 LINE L1 -968 7074 6953 412 294 176 71 chr3 134673806 134674367 -83362791 - L3 LINE CR1 -312 1265 646 261 318 57 0 chr3 134675793 134675881 -83361277 - L2 LINE L2 -31 3282 3190 335 251 111 17 chr3 134676181 134676480 -83360678 - LTR16A1 LTR ERVL -3 454 1 336 325 101 0 chr3 134676503 134676691 -83360467 + MIR SINE MIR 20 226 -36 375 296 151 26 chr3 134678222 134678374 -83358784 - MIR3 SINE MIR 0 208 38 1784 171 26 13 chr3 134679345 134679649 -83357509 + AluJb SINE Alu 5 312 0 363 260 0 10 chr3 134680902 134680998 -83356160 - L2 LINE L2 -4 3309 3215 23 33 0 0 chr3 134681969 134681999 -83355159 + AT_rich Low_complexity Low_complexity 1 30 0 2048 247 64 57 chr3 134682123 134683116 -83354042 - L1ME3A LINE L1 0 6170 5177 2189 117 3 3 chr3 134683203 134683501 -83353657 - AluSx SINE Alu -14 298 1 292 239 23 34 chr3 134684933 134685021 -83352137 - L2 LINE L2 -3 3310 3224 199 285 51 51 chr3 134685258 134685395 -83351763 + L2 LINE L2 2258 2394 -920 2114 132 0 10 chr3 134686363 134686674 -83350484 + AluSg SINE Alu 1 308 -2 260 283 0 0 chr3 134686699 134686759 -83350399 + (TATG)n Simple_repeat Simple_repeat 1 60 0 282 227 173 0 chr3 134686759 134686834 -83350324 + L1ME4a LINE L1 5935 6022 -99 728 243 75 1 chr3 134688492 134688693 -83348465 - MIR SINE MIR -15 247 34 791 285 77 4 chr3 134690250 134690485 -83346673 + MIR SINE MIR 9 260 -2 22 0 0 0 chr3 134690627 134690649 -83346509 + AT_rich Low_complexity Low_complexity 1 22 0 2275 90 0 37 chr3 134690787 134691109 -83346049 - AluSg SINE Alu 0 310 1 587 188 42 55 chr3 134693158 134693323 -83343835 + L1MC5 LINE L1 7763 7925 -36 798 104 0 89 chr3 134694500 134694635 -83342523 + MER1B DNA MER1_type 217 339 0 264 315 203 0 chr3 134694813 134694956 -83342202 - MIR SINE MIR -71 191 20 321 261 254 8 chr3 134695204 134695338 -83341820 - L2 LINE L2 0 3272 3106 453 241 110 55 chr3 134695350 134695495 -83341663 - MIR3 SINE MIR -25 183 31 863 207 115 19 chr3 134695857 134696118 -83341040 - L2 LINE L2 0 3313 3028 225 212 0 15 chr3 134696152 134696218 -83340940 - L1MC4 LINE L1 -1337 6705 6641 281 153 0 17 chr3 134696271 134696330 -83340828 + (TA)n Simple_repeat Simple_repeat 1 58 0 991 194 39 0 chr3 134696556 134696736 -83340422 - MER5A DNA MER1_type -1 188 2 1842 146 7 11 chr3 134700285 134700597 -83336561 + AluJo SINE Alu 1 311 0 753 240 46 10 chr3 134700886 134701082 -83336076 - L2 LINE L2 0 3313 3111 433 239 9 18 chr3 134701144 134701257 -83335901 - L2 LINE L2 -3175 139 28 2129 113 23 0 chr3 134701321 134701622 -83335536 + AluY SINE Alu 1 308 -3 439 191 0 12 chr3 134703122 134703206 -83333952 + L2 LINE L2 3199 3281 -32 1569 151 38 4 chr3 134704418 134704657 -83332501 - AluJo SINE Alu -45 267 21 214 205 0 0 chr3 134704677 134704716 -83332442 + (TAA)n Simple_repeat Simple_repeat 1 39 0 552 298 132 61 chr3 134704882 134705261 -83331897 - MLT1I LTR MaLR 0 409 4 2577 108 101 0 chr3 134705452 134705840 -83331318 - MSTA LTR MaLR -1 427 1 202 385 13 0 chr3 134706400 134706478 -83330680 + MIR SINE MIR 23 101 -107 2044 137 20 3 chr3 134706517 134706817 -83330341 + AluSx SINE Alu 1 305 -7 37 62 0 0 chr3 134706976 134707041 -83330117 + AT_rich Low_complexity Low_complexity 1 65 0 24 41 0 20 chr3 134707070 134707100 -83330058 + AT_rich Low_complexity Low_complexity 1 31 -17 810 152 0 36 chr3 134707100 134707238 -83329920 + FLAM_C SINE Alu 1 133 0 24 41 0 20 chr3 134707238 134707256 -83329902 + AT_rich Low_complexity Low_complexity 31 48 0 1705 187 0 22 chr3 134707353 134707668 -83329490 + AluJb SINE Alu 1 308 -4 234 325 26 0 chr3 134707777 134707854 -83329304 + MLT1F1 LTR MaLR 46 124 -443 1987 133 111 38 chr3 134707854 134708252 -83328906 + L1MC3 LINE L1 7189 7615 -170 1957 108 0 0 chr3 134708267 134708544 -83328614 + L1PA8 LINE L1 5893 6169 -3 192 323 62 19 chr3 134708549 134708710 -83328448 - L2 LINE L2 -2283 1031 864 775 249 44 35 chr3 134708714 134708943 -83328215 + L1MEc LINE L1 30 260 -6136 557 225 35 14 chr3 134708933 134709075 -83328083 + L1MEc LINE L1 519 663 -5733 * 28 0 0 0 chr3 134709089 134709117 -83328041 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr3 134709213 134709246 -83327912 + AT_rich Low_complexity Low_complexity 1 33 0 1197 243 99 39 chr3 134709716 134710181 -83326977 - MLT1J LTR MaLR -16 495 3 2383 108 0 0 chr3 134710190 134710495 -83326663 - AluSq SINE Alu -8 305 1 2201 120 0 0 chr3 134711044 134711335 -83325823 - AluSx SINE Alu -21 291 1 228 233 22 139 chr3 134711519 134711699 -83325459 - L2 LINE L2 -224 3048 2890 369 75 0 0 chr3 134712233 134712286 -83324872 + (TG)n Simple_repeat Simple_repeat 1 53 0 212 29 0 59 chr3 134712286 134712320 -83324838 + (CAGAGA)n Simple_repeat Simple_repeat 2 33 0 1676 177 23 3 chr3 134712724 134713024 -83324134 + AluJo SINE Alu 1 306 -6 732 188 0 8 chr3 134713031 134713164 -83323994 + FLAM_C SINE Alu 1 132 -1 33 0 0 0 chr3 134713164 134713197 -83323961 + AT_rich Low_complexity Low_complexity 1 33 0 210 71 0 0 chr3 134713339 134713367 -83323791 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 1441 187 22 29 chr3 134713859 134714132 -83323026 - AluJb SINE Alu -22 290 20 571 239 68 0 chr3 134715512 134715675 -83321483 - L2 LINE L2 -4 3309 3136 228 188 0 0 chr3 134715679 134715748 -83321410 + (TA)n Simple_repeat Simple_repeat 2 70 0 2144 113 17 0 chr3 134715760 134716051 -83321107 - AluSx SINE Alu -16 296 1 2594 178 76 33 chr3 134716702 134716729 -83320429 + MLT1F1 LTR MaLR 1 25 -542 2541 61 0 0 chr3 134716729 134717025 -83320133 + AluY SINE Alu 1 296 -15 2594 178 76 33 chr3 134717025 134717537 -83319621 + MLT1F1 LTR MaLR 25 563 -4 298 235 24 12 chr3 134717561 134717646 -83319512 + MIR3 SINE MIR 86 171 -37 206 269 179 0 chr3 134717987 134718054 -83319104 - MIR SINE MIR -133 129 51 24 32 0 0 chr3 134718116 134718147 -83319011 + AT_rich Low_complexity Low_complexity 1 31 0 432 111 0 0 chr3 134718339 134718402 -83318756 - AluS SINE Alu -21 291 229 1866 139 14 30 chr3 134718432 134718727 -83318431 - AluSx SINE Alu -22 290 1 2343 96 0 19 chr3 134718852 134719164 -83317994 - AluSx SINE Alu -6 306 1 497 264 110 12 chr3 134719636 134719799 -83317359 + MIR3 SINE MIR 30 208 0 1814 125 14 38 chr3 134720113 134720402 -83316756 + AluSx SINE Alu 1 282 -30 962 153 83 0 chr3 134720413 134720570 -83316588 + AluJb SINE Alu 129 298 -14 350 267 50 17 chr3 134721342 134721462 -83315696 + MIR SINE MIR 17 140 -68 1448 109 0 28 chr3 134721902 134722113 -83315045 + AluSg/x SINE Alu 106 310 0 636 193 140 41 chr3 134723096 134723267 -83313891 + MER5A DNA MER1_type 1 188 -1 748 175 0 0 chr3 134723654 134723768 -83313390 - FLAM_C SINE Alu -28 115 2 2240 126 0 0 chr3 134724697 134724999 -83312159 - AluSq SINE Alu -11 302 1 224 291 13 101 chr3 134725084 134725242 -83311916 - MIR SINE MIR -114 148 5 510 135 0 0 chr3 134725367 134725471 -83311687 + (CA)n Simple_repeat Simple_repeat 2 105 0 185 250 0 0 chr3 134726478 134726526 -83310632 - L2 LINE L2 -5 3308 3261 2432 60 0 0 chr3 134726754 134727059 -83310099 + AluY SINE Alu 1 305 0 218 312 21 21 chr3 134727827 134727915 -83309243 + L2 LINE L2 3180 3267 -46 452 288 31 37 chr3 134727915 134728103 -83309055 + MIR SINE MIR 1 191 -66 2434 91 0 0 chr3 134728805 134729112 -83308046 - AluSq SINE Alu -6 307 1 696 261 95 0 chr3 134729199 134729410 -83307748 - MIR SINE MIR 0 262 32 1517 141 5 0 chr3 134730120 134730340 -83306818 + AluJb SINE Alu 1 221 -91 1476 256 58 48 chr3 134730451 134731073 -83306085 - HAL1 LINE L1 -1351 1156 529 826 125 0 114 chr3 134731283 134731498 -83305660 + AluYa5 SINE Alu 127 321 0 374 269 67 0 chr3 134731786 134731890 -83305268 - L2 LINE L2 -7 3306 3196 435 333 94 17 chr3 134732001 134732181 -83304977 - MIR3 SINE MIR -11 197 4 264 236 142 52 chr3 134732831 134733098 -83304060 - L1ME4a LINE L1 -82 6039 5749 1001 157 0 0 chr3 134733111 134733264 -83303894 - L1PA16 LINE L1 -9 6157 6005 2086 131 0 3 chr3 134734314 134734612 -83302546 - AluSx SINE Alu -15 297 1 789 196 43 16 chr3 134734629 134734813 -83302345 - MIR SINE MIR -11 251 63 1329 152 33 89 chr3 134736639 134736909 -83300249 + AluJb SINE Alu 27 281 -31 253 213 29 154 chr3 134736925 134737061 -83300097 + MER5A DNA MER1_type 71 189 0 274 234 106 0 chr3 134737064 134737158 -83300000 + MIR SINE MIR 104 207 -55 235 323 11 43 chr3 134738740 134738926 -83298232 + CT-rich Low_complexity Low_complexity 1 180 0 404 261 155 0 chr3 134739322 134739483 -83297675 + MIR3 SINE MIR 10 195 -13 359 222 0 0 chr3 134739832 134739904 -83297254 + MER5A DNA MER1_type 1 72 -117 1299 113 35 70 chr3 134739905 134740134 -83297024 + AluSg/x SINE Alu 85 305 -7 1616 32 5 0 chr3 134740144 134740331 -83296827 + AluY SINE Alu 120 307 -4 897 193 0 12 chr3 134740334 134740495 -83296663 + AluJo/FRAM SINE Alu 137 295 -7 1510 169 54 22 chr3 134740506 134740784 -83296374 + AluJb SINE Alu 1 287 -25 23 0 0 0 chr3 134740787 134740810 -83296348 + AT_rich Low_complexity Low_complexity 1 23 0 465 160 0 0 chr3 134740852 134740927 -83296231 + MER5A DNA MER1_type 115 189 0 1978 149 0 13 chr3 134742318 134742619 -83294539 + AluJb SINE Alu 1 297 -15 820 216 18 0 chr3 134743162 134743333 -83293825 + MER5B DNA MER1_type 5 178 0 235 306 74 0 chr3 134743335 134743443 -83293715 - MIR3 SINE MIR -50 158 43 453 196 60 30 chr3 134743764 134743897 -83293261 + MER5B DNA MER1_type 1 137 -41 1089 200 0 0 chr3 134743912 134744102 -83293056 + AluJb SINE Alu 121 310 -2 196 167 0 0 chr3 134744106 134744142 -83293016 + MER5A DNA MER1_type 154 189 0 5125 135 39 14 chr3 134744213 134745081 -83292077 + L1MB3 LINE L1 5254 6143 -40 470 282 208 9 chr3 134745542 134745758 -83291400 - MIR SINE MIR 0 262 4 632 313 24 5 chr3 134746929 134747137 -83290021 - L3 LINE CR1 -12 1565 1354 441 114 0 0 chr3 134747780 134747850 -83289308 - AluJo SINE Alu -2 310 241 1243 141 0 6 chr3 134747850 134748027 -83289131 - AluJo SINE Alu -136 176 1 229 274 63 42 chr3 134748203 134748217 -83288941 + MIR SINE MIR 19 31 -231 1703 149 11 7 chr3 134748217 134748486 -83288672 + AluJo SINE Alu 21 290 -22 229 274 63 42 chr3 134748486 134748566 -83288592 + MIR SINE MIR 31 115 -147 624 229 97 0 chr3 134748566 134748710 -83288448 + FRAM SINE Alu 1 152 -24 981 163 0 24 chr3 134748938 134749104 -83288054 - AluJb SINE Alu -10 302 141 747 246 170 37 chr3 134750804 134750924 -83286234 + L2 LINE L2 2728 2831 -482 1831 218 61 35 chr3 134750924 134751414 -83285744 - MLT1D LTR MaLR 0 505 3 747 246 170 37 chr3 134751414 134751808 -83285350 + L2 LINE L2 2831 3304 -9 1482 185 104 0 chr3 134753045 134753330 -83283828 + AluJo SINE Alu 1 312 0 241 196 0 0 chr3 134753996 134754042 -83283116 - MER5B DNA MER1_type -2 176 131 1155 139 6 0 chr3 134754044 134754216 -83282942 + AluSg/x SINE Alu 120 292 -18 1138 292 80 52 chr3 134754971 134755485 -83281673 - MLT1K LTR MaLR -48 540 13 1120 169 22 0 chr3 134755498 134755682 -83281476 + MER5A DNA MER1_type 2 189 0 367 260 29 0 chr3 134755690 134755794 -83281364 + MER5B DNA MER1_type 1 107 -71 451 250 46 0 chr3 134756103 134756211 -83280947 + L2 LINE L2 3160 3272 0 819 127 0 0 chr3 134756259 134756377 -83280781 + FLAM_C SINE Alu 1 118 -15 234 0 0 0 chr3 134756381 134756407 -83280751 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1237 118 6 0 chr3 134756671 134756840 -83280318 + AluSg/x SINE Alu 126 295 -15 2480 92 0 0 chr3 134757453 134757756 -83279402 - AluSx SINE Alu -9 303 1 319 261 115 15 chr3 134758002 134758132 -83279026 + MIR SINE MIR 120 262 0 1409 185 14 64 chr3 134758222 134758519 -83278639 - AluJb SINE Alu -30 282 1 254 313 0 31 chr3 134759064 134759160 -83277998 - MLT1K LTR MaLR -480 108 16 569 130 65 0 chr3 134759174 134759282 -83277876 + MER5A DNA MER1_type 2 116 -73 695 178 0 67 chr3 134759313 134759448 -83277710 + FLAM_C SINE Alu 1 126 -7 386 319 21 0 chr3 134759465 134759606 -83277552 - MIR SINE MIR -87 175 32 1901 152 40 0 chr3 134763134 134763430 -83273728 - AluJo SINE Alu -4 308 1 2215 110 0 3 chr3 134763870 134764162 -83272996 - AluSx SINE Alu -21 291 1 1800 151 14 0 chr3 134764772 134765051 -83272107 + AluJo SINE Alu 23 305 -7 812 261 0 6 chr3 134765164 134765340 -83271818 + MER8 DNA MER2_type 1 175 -64 252 261 15 0 chr3 134765317 134765382 -83271776 + MER2 DNA MER2_type 280 345 0 * 191 88 29 0 chr3 134765436 134765470 -83271688 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 22 35 0 0 chr3 134765883 134765912 -83271246 + AT_rich Low_complexity Low_complexity 1 29 0 283 86 0 0 chr3 134766061 134766096 -83271062 - U2 snRNA snRNA -153 35 1 2378 83 0 0 chr3 134766937 134767225 -83269933 - AluSc SINE Alu -21 288 1 232 197 0 70 chr3 134767625 134767696 -83269462 + T-rich Low_complexity Low_complexity 1 66 0 274 192 110 0 chr3 134767986 134768059 -83269099 - MER63 DNA MER1_type -3 1057 977 485 250 98 0 chr3 134768061 134768173 -83268985 - MER63 DNA MER1_type -86 750 2 397 262 71 0 chr3 134768229 134768355 -83268803 - L1ME LINE L1 -376 5745 5611 284 247 183 0 chr3 134768636 134768729 -83268429 + MIR SINE MIR 2 111 -151 282 195 52 0 chr3 134768776 134768853 -83268305 - Charlie5 DNA MER1_type -57 2555 2475 1959 132 59 0 chr3 134768903 134769190 -83267968 + AluSq SINE Alu 1 304 -9 547 140 97 0 chr3 134769195 134769309 -83267849 - Charlie5 DNA MER1_type -111 2501 2377 387 274 82 7 chr3 134769313 134769448 -83267710 + MIR SINE MIR 118 262 0 2128 135 3 3 chr3 134769467 134769770 -83267388 + AluSx SINE Alu 1 303 -9 689 161 211 4 chr3 134770315 134770563 -83266595 + MER33 DNA MER1_type 1 292 -71 1648 173 10 13 chr3 134771376 134771676 -83265482 - AluSx SINE Alu -13 299 1 198 273 55 36 chr3 134772271 134772381 -83264777 + L3 LINE CR1 1446 1557 -20 356 336 38 43 chr3 134773749 134773984 -83263174 + MIR SINE MIR 23 256 -6 1878 161 16 0 chr3 134774450 134774755 -83262403 + AluJb SINE Alu 1 310 -2 242 308 0 0 chr3 134775515 134775580 -83261578 - MIR SINE MIR -122 140 76 217 49 0 49 chr3 134775643 134775684 -83261474 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1152 21 7 21 chr3 134776849 134776993 -83260165 - L1PA3 LINE L1 0 6155 6014 21 0 0 0 chr3 134777373 134777394 -83259764 + AT_rich Low_complexity Low_complexity 1 21 0 1090 154 0 0 chr3 134777401 134777557 -83259601 - FRAM SINE Alu -25 151 1 1278 159 5 0 chr3 134777575 134777764 -83259394 + AluSx SINE Alu 1 190 -122 2245 117 0 7 chr3 134777936 134778235 -83258923 + AluSx SINE Alu 1 297 -15 468 264 163 26 chr3 134779313 134779733 -83257425 + L1MC/D LINE L1 5176 5654 -814 1759 144 47 0 chr3 134780294 134780550 -83256608 - AluSx SINE Alu -39 273 6 1829 148 16 16 chr3 134780653 134780957 -83256201 - AluJb SINE Alu -8 304 1 236 405 16 0 chr3 134781400 134781526 -83255632 - MIR3 SINE MIR -21 187 60 275 152 10 0 chr3 134782475 134782536 -83254622 - MIR SINE MIR -62 146 103 493 205 43 68 chr3 134782691 134782852 -83254306 - L2 LINE L2 -11 3302 3146 2129 166 119 21 chr3 134782902 134783372 -83253786 - MER74A LTR ERVL -42 516 1 1556 171 13 58 chr3 134783380 134783690 -83253468 + AluJo SINE Alu 1 296 -16 377 329 28 24 chr3 134783692 134783905 -83253253 - L2 LINE L2 -157 3156 2943 809 312 46 41 chr3 134784295 134784675 -83252483 + L2 LINE L2 2719 3095 -218 189 0 0 0 chr3 134784675 134784696 -83252462 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 2020 123 0 14 chr3 134784696 134784844 -83252314 - AluSx SINE Alu -32 280 136 2444 81 3 13 chr3 134784844 134785154 -83252004 - AluSp SINE Alu -5 308 2 2020 123 0 14 chr3 134785154 134785289 -83251869 - AluSx SINE Alu -176 136 1 809 312 46 41 chr3 134785289 134785502 -83251656 + L2 LINE L2 3094 3313 0 1715 176 33 0 chr3 134786889 134787211 -83249947 - AluJb SINE Alu 0 331 1 1806 162 6 35 chr3 134787211 134787524 -83249634 - AluJo SINE Alu -7 305 1 1678 199 306 2 chr3 134787787 134788310 -83248848 + L1MC4 LINE L1 7361 8042 0 420 174 102 0 chr3 134789176 134789274 -83247884 - MER103 DNA DNA -4 162 55 2526 70 0 0 chr3 134789336 134789634 -83247524 + AluY SINE Alu 1 298 -13 1988 152 0 7 chr3 134789701 134790003 -83247155 + AluJb SINE Alu 1 300 -12 925 225 11 0 chr3 134790269 134790451 -83246707 - MER5A DNA MER1_type 0 189 6 2494 66 0 22 chr3 134790740 134791058 -83246100 - AluY SINE Alu 0 311 1 2808 179 29 68 chr3 134791677 134792113 -83245045 - L1MA9 LINE L1 -280 6032 5628 2238 129 3 0 chr3 134792113 134792423 -83244735 - AluSq SINE Alu -2 311 1 2808 179 29 68 chr3 134792423 134792636 -83244522 - L1MA9 LINE L1 -684 5628 5408 1843 146 3 17 chr3 134792722 134793040 -83244118 - AluJo SINE Alu 0 314 1 406 138 11 11 chr3 134795698 134795785 -83241373 + CT-rich Low_complexity Low_complexity 2 88 0 660 129 61 95 chr3 134795788 134795935 -83241223 - FLAM_C SINE Alu 0 143 2 3045 68 45 45 chr3 134795966 134796037 -83241121 - MLT2A1 LTR ERVL 0 444 374 261 0 0 0 chr3 134796037 134796066 -83241092 + (CA)n Simple_repeat Simple_repeat 2 30 0 3045 68 45 45 chr3 134796066 134796438 -83240720 - MLT2A1 LTR ERVL -69 375 1 3422 141 13 25 chr3 134796600 134797153 -83240005 + MER44D DNA MER2_type 5 605 0 539 239 53 48 chr3 134797711 134797899 -83239259 - MIR SINE MIR -13 249 61 338 128 85 117 chr3 134798053 134798077 -83239081 + MER5C DNA MER1_type 234 257 -67 779 145 7 65 chr3 134798077 134798215 -83238943 + FLAM_C SINE Alu 1 130 -3 338 128 85 117 chr3 134798215 134798284 -83238874 + MER5C DNA MER1_type 257 324 0 392 254 91 53 chr3 134798358 134798436 -83238722 + L1ME3A LINE L1 5740 5814 -356 2224 125 0 0 chr3 134798436 134798732 -83238426 + AluSx SINE Alu 1 296 -16 392 254 91 53 chr3 134798732 134798862 -83238296 + L1ME3A LINE L1 5814 5956 -214 1046 129 0 6 chr3 134800777 134800955 -83236203 + (TCCC)n Simple_repeat Simple_repeat 2 178 0 849 156 0 22 chr3 134800955 134801135 -83236023 + CT-rich Low_complexity Low_complexity 1 176 0 1549 189 25 44 chr3 134801149 134801527 -83235631 - AluSx SINE Alu 0 372 1 261 98 0 0 chr3 134802436 134802477 -83234681 + (TC)n Simple_repeat Simple_repeat 2 42 0 1139 101 0 0 chr3 134803018 134803199 -83233959 - AluSg/x SINE Alu 0 316 136 603 271 52 10 chr3 134803218 134803410 -83233748 + MIR SINE MIR 33 232 -30 207 0 0 0 chr3 134803467 134803490 -83233668 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2690 246 148 19 chr3 134803527 134804866 -83232292 + L2 LINE L2 1784 3269 -44 306 341 89 16 chr3 134805668 134805914 -83231244 + L3 LINE CR1 1189 1452 -125 198 0 0 0 chr3 134806274 134806296 -83230862 + (TG)n Simple_repeat Simple_repeat 2 23 0 392 267 48 53 chr3 134808455 134808661 -83228497 - L1ME LINE L1 -303 5818 5614 358 206 109 0 chr3 134811381 134811473 -83225685 + Charlie7 DNA MER1_type 1 102 -2510 * 492 203 92 18 chr3 134811457 134811620 -83225538 + Charlie7 DNA MER1_type 2438 2612 0 383 356 30 15 chr3 134811719 134811921 -83225237 + L2 LINE L2 2865 3069 -203 209 94 0 0 chr3 134812336 134812368 -83224790 + L2 LINE L2 3279 3310 -3 573 279 98 77 chr3 134812739 134812913 -83224245 + L3 LINE CR1 902 1071 -506 2295 110 10 0 chr3 134812913 134813221 -83223937 - AluSx SINE Alu -1 311 1 573 279 98 77 chr3 134813221 134813515 -83223643 + L3 LINE CR1 1071 1380 -197 275 300 50 30 chr3 134814119 134814219 -83222939 + MIR SINE MIR 36 137 -71 1996 123 10 13 chr3 134814637 134814937 -83222221 + AluSx SINE Alu 1 299 -13 217 211 0 0 chr3 134814940 134814978 -83222180 + polypurine Low_complexity Low_complexity 2 39 0 2278 87 3 26 chr3 134815444 134815754 -83221404 - AluSp SINE Alu -10 303 1 761 204 0 0 chr3 134815807 134815949 -83221209 - FLAM_C SINE Alu 0 143 2 1483 172 8 31 chr3 134816130 134816391 -83220767 - AluJo SINE Alu -23 289 35 559 238 14 26 chr3 134816408 134816573 -83220585 - L1MA9 LINE L1 -2 6289 6132 2665 197 39 47 chr3 134816633 134816960 -83220198 - L1MA9 LINE L1 -174 6138 5810 7386 49 6 9 chr3 134816960 134818248 -83218910 - L1PA7 LINE L1 0 6154 4873 2665 197 39 47 chr3 134818248 134818265 -83218893 - L1MA9 LINE L1 -502 5810 5794 297 0 0 0 chr3 134818265 134818298 -83218860 + (TC)n Simple_repeat Simple_repeat 2 34 0 2665 197 39 47 chr3 134818298 134818618 -83218540 - L1MA9 LINE L1 -518 5794 5478 2326 117 0 0 chr3 134819020 134819329 -83217829 - AluSx SINE Alu -3 309 1 23 0 0 0 chr3 134819337 134819360 -83217798 + AT_rich Low_complexity Low_complexity 1 23 0 769 164 15 8 chr3 134819710 134819844 -83217314 - AluJo SINE Alu -176 136 2 295 279 58 12 chr3 134820282 134820368 -83216790 + L2 LINE L2 3209 3298 -15 1695 169 48 4 chr3 134822130 134822248 -83214910 + AluJb SINE Alu 1 112 -200 243 0 0 0 chr3 134822248 134822275 -83214883 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1695 169 48 4 chr3 134822275 134822429 -83214729 + AluJb SINE Alu 112 285 -27 423 0 0 0 chr3 134822429 134822476 -83214682 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 872 134 0 0 chr3 134822480 134822645 -83214513 + FLAM_C SINE Alu 1 165 0 1990 164 3 0 chr3 134824263 134824574 -83212584 - AluJo SINE Alu 0 312 1 2412 69 0 3 chr3 134825222 134825513 -83211645 - AluY SINE Alu -21 290 1 530 264 190 45 chr3 134825971 134826308 -83210850 - L2 LINE L2 -1 3312 2927 404 241 75 33 chr3 134827325 134827484 -83209674 + MIR SINE MIR 4 167 -67 2564 64 0 3 chr3 134828965 134829276 -83207882 + AluY SINE Alu 1 310 -1 194 290 11 65 chr3 134829581 134829674 -83207484 + MIR SINE MIR 79 166 -96 1834 157 3 13 chr3 134830508 134830813 -83206345 + AluJb SINE Alu 1 302 -10 239 133 78 11 chr3 134832493 134832583 -83204575 + (TA)n Simple_repeat Simple_repeat 1 96 0 1914 161 0 3 chr3 134832583 134832869 -83204289 - AluJo SINE Alu -27 285 1 2205 135 3 0 chr3 134833036 134833347 -83203811 + AluSx SINE Alu 1 312 0 1264 154 8 39 chr3 134834827 134835061 -83202097 - AluJb SINE Alu -1 311 85 1686 170 90 75 chr3 134835350 134835598 -83201560 - MLT1C LTR MaLR -6 461 201 2178 88 46 3 chr3 134835598 134835883 -83201275 - AluSp SINE Alu -16 297 1 1686 170 90 75 chr3 134835883 134836088 -83201070 - MLT1C LTR MaLR -266 201 1 339 65 0 0 chr3 134836966 134837012 -83200146 + (TG)n Simple_repeat Simple_repeat 1 46 0 2377 88 0 0 chr3 134837045 134837339 -83199819 - AluSg SINE Alu -16 294 1 33 25 0 0 chr3 134838055 134838095 -83199063 + AT_rich Low_complexity Low_complexity 1 40 0 1997 145 3 0 chr3 134838101 134838390 -83198768 - AluSx SINE Alu -18 294 5 513 0 0 0 chr3 134840674 134840731 -83196427 + (CA)n Simple_repeat Simple_repeat 2 58 0 684 274 65 0 chr3 134841637 134841838 -83195320 - MIR SINE MIR 0 262 49 1990 156 14 40 chr3 134842316 134842595 -83194563 + MER2 DNA MER2_type 1 271 -73 2140 114 0 43 chr3 134842595 134842920 -83194238 - AluSx SINE Alu -1 311 1 1990 156 14 40 chr3 134842920 134842993 -83194165 + MER2 DNA MER2_type 271 344 0 2041 114 7 4 chr3 134844603 134844884 -83192274 - AluSx SINE Alu -30 282 1 446 235 0 10 chr3 134845378 134845480 -83191678 + MIR SINE MIR 31 131 -77 1646 167 33 30 chr3 134845739 134846039 -83191119 + AluJo SINE Alu 1 301 -11 492 167 27 24 chr3 134846058 134846355 -83190803 + (TATATG)n Simple_repeat Simple_repeat 1 298 0 198 0 0 0 chr3 134847714 134847736 -83189422 + (TA)n Simple_repeat Simple_repeat 2 23 0 194 150 25 0 chr3 134848205 134848245 -83188913 + CT-rich Low_complexity Low_complexity 2 42 0 1990 140 17 3 chr3 134854332 134854632 -83182526 - AluSx SINE Alu -8 304 1 1087 116 19 53 chr3 134856644 134856851 -83180307 - L1MB4 LINE L1 -1 6179 5980 228 320 134 0 chr3 134857178 134857275 -83179883 + MIR SINE MIR 22 131 -77 451 189 0 32 chr3 134858998 134859093 -83178065 - MIR SINE MIR -81 181 90 180 370 43 0 chr3 134859218 134859356 -83177802 - L2 LINE L2 -358 2955 2812 1930 164 3 3 chr3 134859505 134859817 -83177341 - AluJb SINE Alu 0 312 1 439 255 60 72 chr3 134860290 134860616 -83176542 + L1M4 LINE L1 2631 2954 -3192 1624 180 10 10 chr3 134860731 134861031 -83176127 + AluJo SINE Alu 1 300 -12 1573 164 50 37 chr3 134861906 134862205 -83174953 - AluJb SINE Alu -9 303 1 251 304 38 0 chr3 134862785 134862864 -83174294 - L2 LINE L2 -1 3271 3190 24 32 0 0 chr3 134862892 134862923 -83174235 + AT_rich Low_complexity Low_complexity 1 31 0 204 354 15 0 chr3 134862925 134862990 -83174168 - L2 LINE L2 -71 3201 3136 500 104 0 0 chr3 134863486 134863553 -83173605 - AluS SINE Alu -242 71 5 354 286 50 17 chr3 134863682 134863801 -83173357 - L2 LINE L2 -4 3268 3146 2277 104 3 7 chr3 134863851 134864160 -83172998 + AluSp SINE Alu 3 310 -3 295 182 39 13 chr3 134864344 134864421 -83172737 - L1ME4a LINE L1 -82 6039 5961 573 187 96 48 chr3 134864746 134864912 -83172246 + MER5B DNA MER1_type 5 178 0 364 310 152 0 chr3 134865369 134865566 -83171592 - MIR SINE MIR -16 246 20 352 246 95 0 chr3 134866744 134866870 -83170288 + L1ME4a LINE L1 5969 6106 -15 735 192 128 17 chr3 134869001 134869173 -83167985 - AluJb SINE Alu -26 286 96 254 94 75 0 chr3 134869199 134869252 -83167906 - L1MB2 LINE L1 0 6171 6115 864 114 0 0 chr3 134869265 134869379 -83167779 - AluJ SINE Alu -194 118 5 1045 135 0 45 chr3 134869424 134869624 -83167534 - L1MB3 LINE L1 -56 6127 5937 1611 155 89 4 chr3 134869628 134869899 -83167259 - AluJb SINE Alu -17 295 2 267 127 36 0 chr3 134870478 134870533 -83166625 - L1MB2 LINE L1 0 6171 6115 736 124 0 18 chr3 134870540 134870653 -83166505 - FLAM_C SINE Alu -21 122 12 1848 141 9 31 chr3 134870659 134870978 -83166180 - AluJo SINE Alu 0 312 1 352 259 92 23 chr3 134871264 134871395 -83165763 - MIR3 SINE MIR -56 152 13 323 289 45 3 chr3 134871953 134872081 -83165077 + MIR SINE MIR 55 188 -63 1618 128 0 0 chr3 134874079 134874306 -83162852 - AluJo SINE Alu -1 311 85 723 281 52 39 chr3 134874959 134875400 -83161758 - L1M4 LINE L1 -3038 3108 2662 842 136 0 0 chr3 134876206 134876324 -83160834 - FLAM_C SINE Alu -25 118 1 1582 135 12 98 chr3 134876336 134876661 -83160497 - AluJo SINE Alu -5 307 11 373 282 18 9 chr3 134876683 134876809 -83160349 - MIR SINE MIR -66 142 16 2109 143 0 6 chr3 134877238 134877552 -83159606 - AluJb SINE Alu 0 312 1 564 277 59 115 chr3 134877909 134877978 -83159180 + HAL1 LINE L1 14 85 -2422 207 0 0 0 chr3 134877978 134878001 -83159157 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 564 277 59 115 chr3 134878001 134878306 -83158852 + HAL1 LINE L1 85 367 -2140 273 303 0 0 chr3 134878304 134878370 -83158788 - HAL1 LINE L1 -2441 66 1 * 530 66 0 13 chr3 134878501 134878577 -83158581 + (TTCC)n Simple_repeat Simple_repeat 4 78 0 1820 171 16 13 chr3 134878599 134878909 -83158249 - AluJo SINE Alu -1 311 1 1380 262 25 30 chr3 134878909 134879265 -83157893 + HAL1 LINE L1 443 798 -1709 2423 98 0 0 chr3 134879265 134879572 -83157586 - AluSx SINE Alu -5 307 1 1380 262 25 30 chr3 134879572 134879620 -83157538 + HAL1 LINE L1 798 845 -1662 238 286 0 0 chr3 134879628 134879705 -83157453 + L1MDa LINE L1 34 110 -6430 1997 120 55 14 chr3 134879759 134880050 -83157108 + AluJb SINE Alu 1 303 -9 617 37 0 12 chr3 134880097 134880178 -83156980 + (TTCC)n Simple_repeat Simple_repeat 1 80 0 254 307 72 28 chr3 134880551 134880718 -83156440 + L1MDa LINE L1 781 955 -5575 2015 264 67 38 chr3 134880761 134881830 -83155328 + L1MDa LINE L1 891 1954 -4586 1936 237 72 41 chr3 134881840 134882017 -83155141 + HAL1 LINE L1 899 1069 -1438 180 0 0 0 chr3 134882017 134882037 -83155121 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2030 143 0 0 chr3 134882037 134882317 -83154841 - AluSx SINE Alu -32 280 1 1936 237 72 41 chr3 134882317 134882941 -83154217 + HAL1 LINE L1 1068 1726 -781 1050 211 106 54 chr3 134882930 134883243 -83153915 + HAL1 LINE L1 2072 2412 -95 * 1685 176 0 11 chr3 134883243 134883522 -83153636 + AluJb SINE Alu 1 276 -36 1050 211 106 54 chr3 134883522 134883615 -83153543 + HAL1 LINE L1 2412 2499 -8 757 203 0 0 chr3 134883937 134884060 -83153098 - FLAM_C SINE Alu -19 124 2 554 230 50 61 chr3 134884406 134884667 -83152491 + L1MC5 LINE L1 7660 7917 -44 1770 66 0 4 chr3 134884722 134884949 -83152209 + L1PB1 LINE L1 5926 6151 0 24 32 0 0 chr3 134885068 134885099 -83152059 + AT_rich Low_complexity Low_complexity 1 31 0 940 196 22 6 chr3 134885234 134885413 -83151745 + AluJb SINE Alu 120 301 -11 38 51 0 0 chr3 134885415 134885474 -83151684 + AT_rich Low_complexity Low_complexity 1 59 0 189 290 0 32 chr3 134886107 134886169 -83150989 - MIR SINE MIR -133 75 16 212 331 87 8 chr3 134887194 134887321 -83149837 + MIR SINE MIR 56 192 -70 187 222 0 0 chr3 134887342 134887378 -83149780 - L2 LINE L2 -9 3263 3228 2408 100 0 0 chr3 134887473 134887773 -83149385 + AluSx SINE Alu 1 300 -12 207 234 21 21 chr3 134887783 134887830 -83149328 - L2 LINE L2 -86 3186 3140 184 299 15 15 chr3 134888108 134888175 -83148983 - MER5B DNA MER1_type -79 99 33 35 54 0 0 chr3 134888715 134888771 -83148387 + AT_rich Low_complexity Low_complexity 1 56 0 365 276 20 72 chr3 134888773 134888925 -83148233 - MIR SINE MIR -105 157 14 2055 143 6 13 chr3 134888981 134889295 -83147863 + AluSx SINE Alu 1 312 0 848 212 0 0 chr3 134889399 134889550 -83147608 + FRAM SINE Alu 1 151 -15 2285 67 3 33 chr3 134890145 134890445 -83146713 + AluY SINE Alu 2 292 -19 2308 97 0 0 chr3 134890557 134890847 -83146311 - AluSx SINE Alu -18 294 5 2326 97 0 7 chr3 134890862 134891160 -83145998 - AluSg1 SINE Alu -13 296 1 2185 104 7 7 chr3 134894415 134894712 -83142446 + AluSq SINE Alu 1 297 -16 189 0 0 0 chr3 134895613 134895634 -83141524 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 215 214 18 18 chr3 134898196 134898252 -83138906 + (TA)n Simple_repeat Simple_repeat 2 57 0 24 0 0 0 chr3 134898824 134898848 -83138310 + AT_rich Low_complexity Low_complexity 1 24 0 1379 179 0 85 chr3 134899273 134899614 -83137544 + AluJb SINE Alu 1 312 0 270 254 119 22 chr3 134900129 134900263 -83136895 - MIR SINE MIR -50 212 66 1702 153 38 3 chr3 134900267 134900554 -83136604 - AluJb SINE Alu -15 297 1 1909 133 13 19 chr3 134900998 134901326 -83135832 - AluSx SINE Alu 0 312 1 383 333 20 45 chr3 134901342 134901415 -83135743 - MIR SINE MIR -50 212 139 2333 60 3 3 chr3 134901415 134901714 -83135444 - AluY SINE Alu -12 299 1 383 333 20 45 chr3 134901714 134901838 -83135320 - MIR SINE MIR -123 139 20 2691 134 60 0 chr3 134901897 134902345 -83134813 - L1MA5 LINE L1 -9 6291 5817 1500 128 92 7 chr3 134903686 134903959 -83133199 + AluJb SINE Alu 1 296 -16 1448 132 94 55 chr3 134904012 134904224 -83132934 + LTR23 LTR ERV1 1 203 -234 1296 168 9 98 chr3 134904224 134904346 -83132812 - AluJo SINE Alu -2 300 169 1755 103 62 41 chr3 134904346 134904636 -83132522 + AluSx SINE Alu 5 300 -12 1296 168 9 98 chr3 134904636 134904840 -83132318 - AluJo SINE Alu -133 169 3 1448 132 94 55 chr3 134904840 134904996 -83132162 + LTR23 LTR ERV1 203 437 0 348 289 42 21 chr3 134904997 134905139 -83132019 + L3 LINE CR1 1259 1403 -174 388 278 198 0 chr3 134905141 134905267 -83131891 - MER5A DNA MER1_type 0 189 39 259 182 0 36 chr3 134905295 134905350 -83131808 + Charlie5 DNA MER1_type 2 54 -2558 543 157 11 0 chr3 134905351 134905440 -83131718 - MER3 DNA MER1_type -107 102 13 587 233 135 70 chr3 134905661 134905707 -83131451 + Charlie2 DNA MER1_type 1962 2004 -858 270 0 0 0 chr3 134905707 134905737 -83131421 + (TG)n Simple_repeat Simple_repeat 2 31 0 587 233 135 70 chr3 134905737 134906076 -83131082 + Charlie2 DNA MER1_type 2004 2372 -490 1141 181 77 53 chr3 134906521 134906896 -83130262 + Charlie2 DNA MER1_type 2365 2748 -114 2112 99 0 7 chr3 134907478 134907792 -83129366 + AluSg SINE Alu 1 312 0 2093 120 0 0 chr3 134908436 134908728 -83128430 + AluSx SINE Alu 3 294 -18 1329 140 119 36 chr3 134908739 134909017 -83128141 + AluJo SINE Alu 1 301 -11 312 175 33 92 chr3 134909031 134909151 -83128007 + L1MC5 LINE L1 7634 7746 -215 898 129 0 0 chr3 134909209 134909341 -83127817 - FLAM_C SINE Alu 0 133 2 855 136 0 0 chr3 134909861 134909979 -83127179 + FLAM_C SINE Alu 1 118 -25 852 217 78 14 chr3 134910984 134911201 -83125957 - MLT1K LTR MaLR 0 588 358 394 367 52 5 chr3 134911197 134911407 -83125751 - MLT1K LTR MaLR -365 223 4 * 1992 146 0 7 chr3 134912064 134912373 -83124785 - AluJb SINE Alu -5 307 1 1478 166 59 14 chr3 134913415 134913705 -83123453 + AluJo SINE Alu 1 303 -9 703 165 9 0 chr3 134914674 134914789 -83122369 + FLAM_C SINE Alu 2 117 -16 606 287 48 6 chr3 134915135 134915302 -83121856 + MIR SINE MIR 69 242 -20 262 128 0 0 chr3 134915714 134915753 -83121405 + LTR56 LTR ERV1 349 387 -58 2236 100 0 0 chr3 134915791 134916092 -83121066 + AluSx SINE Alu 1 301 -11 2283 57 0 3 chr3 134916095 134916422 -83120736 + AluY SINE Alu 1 326 0 1750 153 23 10 chr3 134917140 134917448 -83119710 - AluJb SINE Alu 0 312 1 1018 93 14 0 chr3 134918108 134918248 -83118910 - AluSg/x SINE Alu -15 297 156 844 200 27 11 chr3 134918605 134918790 -83118368 - MER5A DNA MER1_type 0 189 2 268 268 8 89 chr3 134919006 134919129 -83118029 - MER5A DNA MER1_type -44 145 33 378 0 0 0 chr3 134919495 134919537 -83117621 + (TG)n Simple_repeat Simple_repeat 1 42 0 258 339 28 9 chr3 134919555 134919664 -83117494 - MIR3 SINE MIR -27 181 71 837 116 56 143 chr3 134919740 134919956 -83117202 - AluJb SINE Alu -6 306 110 311 235 61 76 chr3 134920169 134920301 -83116857 + MLT1H LTR MaLR 178 307 -242 253 289 2 12 chr3 134920352 134920434 -83116724 + MLT1H LTR MaLR 480 549 0 44 56 0 0 chr3 134920794 134920866 -83116292 + AT_rich Low_complexity Low_complexity 1 72 0 772 108 0 0 chr3 134920866 134920968 -83116190 - AluJb SINE Alu -209 103 2 387 0 0 0 chr3 134922112 134922155 -83115003 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 6540 67 15 35 chr3 134922155 134924084 -83113074 - SVA Other Other -518 1363 50 213 39 0 0 chr3 134924084 134924110 -83113048 + (GGGAGA)n Simple_repeat Simple_repeat 1 26 0 4238 114 60 80 chr3 134924114 134924891 -83112267 + MER4E LTR ERV1 18 779 0 2638 92 66 28 chr3 134925317 134925741 -83111417 - LTR7 LTR ERV1 -10 440 1 2619 80 51 0 chr3 134925741 134926114 -83111044 - HERVH LTR ERV1 0 7713 7322 1496 106 18 9 chr3 134926112 134926330 -83110828 - HERVH LTR ERV1 -1894 5819 5600 * 4298 149 6 1 chr3 134926331 134926990 -83110168 - HERVH LTR ERV1 -2564 5149 4488 3468 101 6 4 chr3 134926992 134927485 -83109673 - HERVH LTR ERV1 -3720 3993 3500 911 135 20 0 chr3 134927484 134927632 -83109526 - HERVH LTR ERV1 -4423 3290 3140 * 19938 96 47 5 chr3 134927626 134930494 -83106664 - HERVH LTR ERV1 -4726 2987 1 2483 105 66 16 chr3 134930496 134930923 -83106235 - LTR7 LTR ERV1 -2 448 1 2432 168 56 2 chr3 134931040 134931469 -83105689 - LTR47A LTR ERVL 0 452 1 253 156 66 189 chr3 134931711 134931833 -83105325 + MIR SINE MIR 86 192 -70 397 237 11 11 chr3 134931983 134932076 -83105082 + Charlie4 DNA MER1_type 1868 1960 -1 1472 207 61 24 chr3 134933158 134933534 -83103624 - MLT1B LTR MaLR 0 390 1 887 145 0 0 chr3 134933831 134933969 -83103189 - FLAM_C SINE Alu -5 138 1 228 220 0 0 chr3 134934028 134934078 -83103080 + MIR3 SINE MIR 135 184 -24 1636 175 3 13 chr3 134934296 134934599 -83102559 + AluJo SINE Alu 1 300 -12 310 158 18 0 chr3 134935136 134935193 -83101965 + MIR SINE MIR 91 148 -60 327 263 164 20 chr3 134936565 134936717 -83100441 + MIR3 SINE MIR 16 189 -19 227 326 76 0 chr3 134937439 134937531 -83099627 - MIR SINE MIR -62 146 48 1924 139 0 10 chr3 134938519 134938829 -83098329 + AluJb SINE Alu 6 312 0 294 208 0 0 chr3 134940457 134940510 -83096648 + L2 LINE L2 3261 3313 0 1750 139 24 3 chr3 134940529 134940816 -83096342 + AluJb SINE Alu 1 293 -19 2426 231 49 7 chr3 134941027 134941617 -83095541 - L1MB7 LINE L1 -50 6134 5520 189 281 17 37 chr3 134942300 134942435 -83094723 + MER5B DNA MER1_type 5 189 0 2008 136 3 3 chr3 134944206 134944507 -83092651 + AluJo SINE Alu 1 301 -11 2190 81 27 3 chr3 134945651 134945946 -83091212 - AluSx SINE Alu -10 302 1 2028 221 33 19 chr3 134946952 134947432 -83089726 + MLT1D LTR MaLR 12 498 -7 198 0 0 0 chr3 134947525 134947547 -83089611 + (CAG)n Simple_repeat Simple_repeat 1 22 0 674 286 32 0 chr3 134947571 134947760 -83089398 - MIR SINE MIR -49 213 19 191 271 0 11 chr3 134947957 134948138 -83089020 + (TG)n Simple_repeat Simple_repeat 1 179 0 258 278 31 73 chr3 134949175 134949366 -83087792 - L1MC4 LINE L1 -1 8041 7859 307 354 28 7 chr3 134950312 134950456 -83086702 - MER117 DNA MER1_type -27 170 24 264 250 83 10 chr3 134951698 134951794 -83085364 + MIR SINE MIR 81 183 -79 469 313 139 0 chr3 134952322 134952530 -83084628 + MIR SINE MIR 2 238 -24 924 230 19 35 chr3 134954824 134955081 -83082077 - MIR SINE MIR 0 262 10 574 303 39 23 chr3 134955082 134955315 -83081843 - L2 LINE L2 -1303 2011 1770 2370 105 0 10 chr3 134955315 134955620 -83081538 + AluSq SINE Alu 1 302 -11 574 303 39 23 chr3 134955620 134955696 -83081462 - L2 LINE L2 -1544 1770 1697 2366 105 0 0 chr3 134955748 134956053 -83081105 + AluSx SINE Alu 1 305 -7 277 341 62 16 chr3 134956153 134956282 -83080876 + L2 LINE L2 3122 3256 -16 1705 165 52 0 chr3 134956970 134957261 -83079897 + AluJo SINE Alu 1 306 -6 2416 80 0 22 chr3 134958043 134958355 -83078803 + AluSg SINE Alu 3 307 -3 902 200 0 6 chr3 134958995 134959160 -83077998 + FRAM SINE Alu 1 164 -2 277 301 0 14 chr3 134960288 134960361 -83076797 + L2 LINE L2 3242 3313 0 2013 133 27 10 chr3 134960649 134960942 -83076216 - AluJo SINE Alu -14 298 1 819 114 0 32 chr3 134961663 134961786 -83075372 + FLAM_C SINE Alu 13 131 -12 338 297 76 42 chr3 134964997 134965115 -83072043 + L1ME4a LINE L1 5927 6048 -73 245 310 58 0 chr3 134966295 134966382 -83070776 - MIR SINE MIR -6 256 165 195 247 71 24 chr3 134966380 134966465 -83070693 - MIR3 SINE MIR -110 98 10 * 272 304 0 0 chr3 134967023 134967102 -83070056 + L3 LINE CR1 786 864 -713 22 0 0 0 chr3 134967141 134967163 -83069995 + AT_rich Low_complexity Low_complexity 1 22 0 2210 126 0 3 chr3 134967238 134967547 -83069611 + AluSx SINE Alu 1 308 -4 281 175 32 0 chr3 134967547 134967610 -83069548 + GA-rich Low_complexity Low_complexity 2 66 0 201 354 12 12 chr3 134967615 134967697 -83069461 + L3 LINE CR1 966 1047 -530 417 259 181 18 chr3 134967782 134967948 -83069210 + L3 LINE CR1 1190 1382 -195 2343 99 10 0 chr3 134967949 134968242 -83068916 + AluSx SINE Alu 1 296 -16 2207 190 56 37 chr3 134968251 134968735 -83068423 + MLT1D LTR MaLR 3 495 -10 433 313 7 14 chr3 134968778 134968922 -83068236 + L3 LINE CR1 1430 1572 -5 202 269 0 0 chr3 134969957 134970009 -83067149 - L2 LINE L2 -2 3270 3219 249 264 100 18 chr3 134970638 134970748 -83066410 + MER5B DNA MER1_type 59 177 -1 2346 98 0 0 chr3 134970795 134971090 -83066068 - AluSc SINE Alu -14 295 1 2025 122 7 21 chr3 134971153 134971465 -83065693 - AluSx SINE Alu 0 308 1 2069 131 0 32 chr3 134972011 134972325 -83064833 + AluJb SINE Alu 5 308 -4 351 298 142 12 chr3 134972328 134972511 -83064647 - MIR SINE MIR -2 260 53 189 282 45 55 chr3 134974310 134974420 -83062738 - L3 LINE CR1 -293 1284 1176 879 169 35 0 chr3 134975272 134975444 -83061714 + MER45A DNA AcHobo 1 178 0 222 302 52 31 chr3 134976073 134976169 -83060989 + MIR SINE MIR 84 181 -81 196 193 88 35 chr3 134976648 134976705 -83060453 + MIR SINE MIR 111 170 -92 1636 164 29 25 chr3 134976981 134977101 -83060057 + AluJo SINE Alu 1 119 -193 194 0 39 0 chr3 134977101 134977127 -83060031 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1636 164 29 25 chr3 134977127 134977317 -83059841 + AluJo SINE Alu 119 312 0 2400 105 0 0 chr3 134977399 134977703 -83059455 - AluSx SINE Alu -5 307 4 438 107 33 58 chr3 134977704 134977769 -83059389 + CT-rich Low_complexity Low_complexity 4 66 -55 316 0 45 0 chr3 134977769 134977813 -83059345 + (CCCTG)n Simple_repeat Simple_repeat 2 47 0 438 107 33 58 chr3 134977813 134977868 -83059290 + CT-rich Low_complexity Low_complexity 66 121 0 1717 212 0 0 chr3 134977871 134978182 -83058976 - AluJb SINE Alu -1 311 1 1829 184 3 3 chr3 134978196 134978490 -83058668 - AluJo SINE Alu -17 295 2 625 324 172 24 chr3 134978508 134978962 -83058196 - L3 LINE CR1 -625 952 432 2597 58 0 13 chr3 134979164 134979476 -83057682 - AluY SINE Alu -3 308 1 1611 192 127 28 chr3 134979512 134979873 -83057285 - Charlie2 DNA MER1_type -456 2406 1978 1976 149 0 0 chr3 134979873 134980180 -83056978 + AluSx SINE Alu 1 307 0 1611 192 127 28 chr3 134980180 134980321 -83056837 - Charlie2 DNA MER1_type -884 1978 1852 2676 42 13 3 chr3 134980403 134980711 -83056447 + AluY SINE Alu 1 311 0 267 297 125 16 chr3 134981347 134981475 -83055683 - MIR3 SINE MIR -65 143 2 212 313 33 65 chr3 134982179 134982393 -83054765 + L2 LINE L2 2836 3042 -230 1969 241 83 10 chr3 134982583 134983161 -83053997 + L1ME3A LINE L1 5479 6098 -72 956 131 44 0 chr3 134983207 134983373 -83053785 + FRAM SINE Alu 11 182 0 273 57 0 0 chr3 134983648 134983683 -83053475 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 183 345 36 0 chr3 134983924 134983979 -83053179 + L2 LINE L2 3117 3173 -99 24 0 0 0 chr3 134984112 134984136 -83053022 + AT_rich Low_complexity Low_complexity 1 24 0 184 324 65 28 chr3 134984480 134984588 -83052570 - MIR3 SINE MIR 0 208 97 398 297 47 8 chr3 134984794 134984922 -83052236 + L2 LINE L2 3140 3272 0 3737 208 49 14 chr3 134985981 134986797 -83050361 - MER21B LTR ERV1 -1 862 18 266 294 0 15 chr3 134986830 134986898 -83050260 - MER21B LTR ERV1 -796 67 1 27 0 0 0 chr3 134986994 134987021 -83050137 + AT_rich Low_complexity Low_complexity 1 27 0 603 242 93 0 chr3 134987033 134987194 -83049964 + L1ME1 LINE L1 5985 6160 -6 21 0 0 0 chr3 134987213 134987234 -83049924 + AT_rich Low_complexity Low_complexity 1 21 0 1469 155 136 12 chr3 134987234 134987485 -83049673 - AluJo SINE Alu -30 282 1 625 154 34 43 chr3 134989677 134989794 -83047364 + FLAM_C SINE Alu 2 117 -26 31 26 0 0 chr3 134989795 134989833 -83047325 + AT_rich Low_complexity Low_complexity 1 38 0 1206 134 0 0 chr3 134991242 134991414 -83045744 - AluSg/x SINE Alu -1 311 140 253 182 39 0 chr3 134993436 134993513 -83043645 + L1MC5 LINE L1 7832 7911 -50 222 365 121 20 chr3 134995452 134995701 -83041457 - L2 LINE L2 -4 3268 2995 1939 166 0 7 chr3 134995722 134996030 -83041128 + AluJo SINE Alu 5 310 -2 22 0 0 0 chr3 134996031 134996053 -83041105 + AT_rich Low_complexity Low_complexity 1 22 0 392 239 87 7 chr3 134996206 134996373 -83040785 + L1ME3A LINE L1 5925 6098 -64 24 32 0 0 chr3 134996373 134996404 -83040754 + AT_rich Low_complexity Low_complexity 1 31 0 3375 204 78 29 chr3 134996667 134997656 -83039502 + L1ME1 LINE L1 4477 5581 -585 2590 60 3 0 chr3 134997656 134997955 -83039203 + AluY SINE Alu 1 300 -11 3375 204 78 29 chr3 134997955 134998559 -83038599 + L1ME1 LINE L1 5581 6154 -12 413 329 202 8 chr3 134998559 134998811 -83038347 + L1ME4a LINE L1 5620 5920 -201 190 365 35 0 chr3 134999123 134999208 -83037950 + MIR SINE MIR 67 154 -108 399 268 89 8 chr3 134999231 134999354 -83037804 - MIR SINE MIR -65 197 65 200 31 62 0 chr3 134999840 134999872 -83037286 + A-rich Low_complexity Low_complexity 5 38 0 516 289 121 34 chr3 134999886 135000125 -83037033 + MIR SINE MIR 3 262 0 2542 229 58 36 chr3 135000248 135000393 -83036765 + L1ME1 LINE L1 5421 5561 -605 3041 87 11 37 chr3 135000393 135000853 -83036305 + LTR7 LTR ERV1 1 448 -2 2542 229 58 36 chr3 135000853 135001428 -83035730 + L1ME1 LINE L1 5561 6157 -9 497 183 21 0 chr3 135001428 135001521 -83035637 - AluJ/FLAM SINE Alu -216 96 2 627 342 27 16 chr3 135001544 135001801 -83035357 + MIR SINE MIR 2 261 -1 360 277 69 10 chr3 135001863 135001964 -83035194 + L1ME4a LINE L1 6007 6113 -8 584 304 230 18 chr3 135003297 135003441 -83033717 - L3 LINE CR1 -24 1553 1441 2091 120 0 10 chr3 135003441 135003761 -83033397 + AluSx SINE Alu 1 312 0 584 304 230 18 chr3 135003761 135004163 -83032995 - L3 LINE CR1 -136 1441 891 456 286 97 5 chr3 135005053 135005248 -83031910 + MIR SINE MIR 41 257 -5 238 306 73 40 chr3 135005404 135005528 -83031630 + L2 LINE L2 3184 3311 -2 246 108 0 235 chr3 135006035 135006137 -83031021 - MER116 DNA Mariner -2 78 1 283 334 47 65 chr3 135006488 135006804 -83030354 - L2 LINE L2 -14 3258 2951 1716 167 23 26 chr3 135006804 135007152 -83030006 + L1MC1 LINE L1 5987 6333 0 283 334 47 65 chr3 135007152 135007284 -83029874 - L2 LINE L2 -321 2951 2818 555 182 34 0 chr3 135007296 135007444 -83029714 + GA-rich Low_complexity Low_complexity 1 153 0 206 252 168 19 chr3 135007491 135007598 -83029560 - L2 LINE L2 -340 2973 2851 22 0 0 0 chr3 135008946 135008968 -83028190 + AT_rich Low_complexity Low_complexity 1 22 0 912 161 0 13 chr3 135008973 135009128 -83028030 + AluSq SINE Alu 1 153 -160 462 169 0 0 chr3 135009128 135009211 -83027947 + AluJ/FRAM SINE Alu 226 308 -4 285 280 123 71 chr3 135009276 135009454 -83027704 + MIR SINE MIR 5 184 -63 323 320 104 8 chr3 135010798 135010923 -83026235 + L1MC5 LINE L1 7751 7887 -74 317 225 127 80 chr3 135010958 135011171 -83025987 - L1ME4a LINE L1 -16 6105 5883 2427 58 0 0 chr3 135011346 135011640 -83025518 - AluY SINE Alu -17 294 1 2309 73 3 16 chr3 135013389 135013703 -83023455 - AluSg SINE Alu 0 310 1 182 267 116 23 chr3 135014384 135014470 -83022688 - L2 LINE L2 -11 3302 3209 276 314 81 35 chr3 135015204 135015462 -83021696 - L2 LINE L2 -337 2977 2708 302 191 154 64 chr3 135016791 135016901 -83020257 + L1MEd LINE L1 47 166 -5953 267 31 0 0 chr3 135016945 135016977 -83020181 + (A)n Simple_repeat Simple_repeat 1 32 0 2177 103 0 0 chr3 135017017 135017309 -83019849 + AluSx SINE Alu 1 292 -20 1617 110 0 4 chr3 135017890 135018118 -83019040 + AluSx SINE Alu 1 227 -85 460 210 27 57 chr3 135019047 135019262 -83017896 + MLT1J2 LTR MaLR 263 399 -10 2141 103 0 3 chr3 135019391 135019683 -83017475 + AluSx SINE Alu 1 291 -21 746 293 39 22 chr3 135019691 135019920 -83017238 + MIR SINE MIR 27 259 -3 295 194 125 0 chr3 135020165 135020237 -83016921 + MLT1J1 LTR MaLR 3 83 -363 412 251 49 79 chr3 135020316 135020519 -83016639 + MLT1J1 LTR MaLR 239 435 -11 2210 104 7 0 chr3 135021510 135021819 -83015339 - AluSx SINE Alu -1 311 1 197 317 0 17 chr3 135022962 135023022 -83014136 + MIR SINE MIR 40 98 -110 1386 12 6 18 chr3 135023282 135023448 -83013710 + L1PA3 LINE L1 5992 6155 0 283 248 179 21 chr3 135023911 135024056 -83013102 + MIR SINE MIR 31 196 -59 348 24 0 0 chr3 135024348 135024389 -83012769 + (CA)n Simple_repeat Simple_repeat 2 42 0 1826 160 7 0 chr3 135025432 135025725 -83011433 - AluJb SINE Alu -17 295 1 25 0 0 0 chr3 135025733 135025758 -83011400 + AT_rich Low_complexity Low_complexity 1 25 0 739 191 25 6 chr3 135026455 135026617 -83010541 + L1MD3 LINE L1 7813 7977 -18 2716 125 56 111 chr3 135026893 135027516 -83009642 + L1MB7 LINE L1 5577 6165 -19 1914 120 25 0 chr3 135027770 135028045 -83009113 + AluSx SINE Alu 1 282 -30 352 163 105 35 chr3 135028718 135028804 -83008354 - FLAM_A SINE Alu -2 131 40 727 178 0 0 chr3 135028807 135028925 -83008233 - AluJo/FLAM SINE Alu -184 118 1 337 285 113 43 chr3 135028939 135029195 -83007963 + MARNA DNA Mariner 161 434 -152 201 233 70 0 chr3 135029947 135029990 -83007168 - L2 LINE L2 -11 3261 3216 297 288 93 25 chr3 135030144 135030262 -83006896 - MIR3 SINE MIR -74 134 9 183 276 250 26 chr3 135030469 135030585 -83006573 + MIR3 SINE MIR 6 147 -61 1962 107 27 27 chr3 135030591 135030891 -83006267 + AluSx SINE Alu 1 300 -12 1302 192 23 0 chr3 135031194 135031455 -83005703 + L1MB4 LINE L1 5705 5971 -209 24 67 0 0 chr3 135031506 135031551 -83005607 + AT_rich Low_complexity Low_complexity 1 45 0 1073 176 49 0 chr3 135031551 135031756 -83005402 + L1MB4 LINE L1 5960 6174 -6 283 281 61 85 chr3 135032277 135032441 -83004717 + MIR SINE MIR 103 262 0 873 147 0 0 chr3 135032541 135032670 -83004488 + AluJo SINE Alu 2 130 -172 425 259 214 63 chr3 135032801 135033118 -83004040 + L1ME4a LINE L1 5556 5920 -201 899 192 6 6 chr3 135033653 135033835 -83003323 + AluJo SINE Alu 131 312 0 780 170 85 7 chr3 135034067 135034220 -83002938 + AluJo SINE Alu 135 299 -13 297 0 0 0 chr3 135034235 135034268 -83002890 + (CA)n Simple_repeat Simple_repeat 2 34 0 2197 98 0 0 chr3 135034304 135034599 -83002559 - AluSc SINE Alu -14 295 1 1846 157 17 0 chr3 135036259 135036553 -83000605 - AluSx SINE Alu -13 299 1 527 112 37 9 chr3 135036709 135036816 -83000342 + GA-rich Low_complexity Low_complexity 2 111 0 2367 84 3 0 chr3 135036836 135037145 -83000013 - AluY SINE Alu -1 310 1 1241 159 183 0 chr3 135037247 135037498 -82999660 + L1PA16 LINE L1 5870 6166 0 209 271 171 36 chr3 135037616 135037756 -82999402 - MIR3 SINE MIR -29 179 21 1968 137 3 6 chr3 135038214 135038527 -82998631 - AluJo SINE Alu 0 312 1 1960 118 45 0 chr3 135038735 135039022 -82998136 - AluSx SINE Alu -12 300 1 202 244 0 0 chr3 135039624 135039669 -82997489 - L2 LINE L2 0 3313 3269 525 300 24 12 chr3 135040314 135040484 -82996674 + MLT1J1 LTR MaLR 22 193 -253 2391 108 13 46 chr3 135040607 135040995 -82996163 + THE1C LTR MaLR 1 375 0 1555 150 3 70 chr3 135041237 135041550 -82995608 + AluJo SINE Alu 1 292 -20 1892 146 3 3 chr3 135042033 135042334 -82994824 + AluJb SINE Alu 1 301 -11 185 343 39 20 chr3 135042717 135042819 -82994339 - MIR SINE MIR -40 222 119 375 276 59 79 chr3 135043098 135043186 -82993972 - L2 LINE L2 -7 3306 3221 2186 106 0 0 chr3 135043186 135043487 -82993671 + AluSg1 SINE Alu 1 301 -8 375 276 59 79 chr3 135043487 135043550 -82993608 - L2 LINE L2 -92 3221 3158 1941 134 3 3 chr3 135043632 135043924 -82993234 - AluJb SINE Alu -14 298 7 2154 102 0 3 chr3 135043940 135044233 -82992925 - AluSg SINE Alu -18 292 1 1648 161 19 19 chr3 135044283 135044616 -82992542 + AluJo SINE Alu 1 333 0 477 294 149 0 chr3 135044984 135045185 -82991973 + MIR SINE MIR 5 235 -27 198 103 0 0 chr3 135045469 135045498 -82991660 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 600 200 64 50 chr3 135045503 135045643 -82991515 - FLAM_C SINE Alu 0 143 2 316 298 84 76 chr3 135046590 135046815 -82990343 + L1M4 LINE L1 3661 3887 -2259 905 173 294 40 chr3 135046824 135047072 -82990086 + AluJb SINE Alu 2 312 0 4483 174 9 13 chr3 135047077 135047933 -82989225 + L1MA9 LINE L1 4477 5329 -817 2184 127 3 0 chr3 135047935 135048242 -82988916 + AluSx SINE Alu 1 308 -4 3900 147 56 37 chr3 135048245 135049048 -82988110 + L1MA9 LINE L1 5495 6312 0 186 43 0 0 chr3 135049675 135049698 -82987460 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 2054 142 0 25 chr3 135049700 135050018 -82987140 - AluJo SINE Alu -2 310 1 1971 144 3 24 chr3 135050591 135050889 -82986269 - AluSx SINE Alu -20 292 1 188 308 25 58 chr3 135051250 135051370 -82985788 - L2 LINE L2 -3 3269 3154 696 183 15 0 chr3 135052044 135052175 -82984983 - MLT1A1 LTR MaLR -232 133 1 523 221 24 8 chr3 135052407 135052534 -82984624 + L1MA10 LINE L1 6196 6324 -10 22 0 0 0 chr3 135052536 135052558 -82984600 + AT_rich Low_complexity Low_complexity 1 22 0 392 222 94 17 chr3 135052745 135052862 -82984296 - MER5B DNA MER1_type -14 164 39 221 0 0 33 chr3 135052871 135052901 -82984257 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 720 175 7 0 chr3 135052902 135053045 -82984113 - FRAM SINE Alu -32 144 1 234 146 0 0 chr3 135053048 135053089 -82984069 - MER5B DNA MER1_type -137 41 1 2220 116 3 0 chr3 135053446 135053747 -82983411 - AluSx SINE Alu -10 302 1 751 264 68 4 chr3 135054444 135054674 -82982484 - MIR SINE MIR 0 262 18 193 309 85 21 chr3 135054753 135054847 -82982311 - L2 LINE L2 -26 3246 3147 1920 161 6 3 chr3 135054973 135055284 -82981874 - AluJb SINE Alu 0 312 1 2363 109 3 0 chr3 135055752 135056063 -82981095 - AluSq SINE Alu -1 312 1 621 130 0 70 chr3 135056063 135056178 -82980980 - FLAM_C SINE Alu -5 138 32 2526 62 0 3 chr3 135056187 135056495 -82980663 - AluY SINE Alu -4 307 1 529 265 84 42 chr3 135056788 135057026 -82980132 - MLT1J1 LTR MaLR -190 256 9 325 232 14 0 chr3 135057094 135057163 -82979995 + L2 LINE L2 3244 3313 0 896 122 30 0 chr3 135057186 135057317 -82979841 - AluJo SINE Alu -177 135 1 519 189 0 128 chr3 135057449 135057613 -82979545 + FLAM_C SINE Alu 1 143 0 272 302 17 17 chr3 135057659 135057775 -82979383 - L2 LINE L2 -223 3049 2934 872 148 0 40 chr3 135057932 135058081 -82979077 - FLAM_C SINE Alu 0 143 1 1678 172 30 24 chr3 135058093 135058390 -82978768 - AluJo SINE Alu -13 299 1 199 268 204 13 chr3 135058529 135058686 -82978472 + L3b LINE CR1 1277 1463 -120 385 264 47 8 chr3 135058910 135059039 -82978119 - MIR SINE MIR -55 153 20 1752 143 11 11 chr3 135059336 135059622 -82977536 + AluJo SINE Alu 6 291 -21 1688 184 0 14 chr3 135060211 135060505 -82976653 + AluJb SINE Alu 1 290 -22 785 290 114 33 chr3 135061000 135061509 -82975649 - L2 LINE L2 -56 3257 2720 409 315 143 4 chr3 135061513 135061751 -82975407 + L2 LINE L2 3042 3312 -1 2365 77 3 22 chr3 135061957 135062268 -82974890 - AluY SINE Alu -6 305 1 2192 115 3 7 chr3 135062324 135062628 -82974530 - AluSx SINE Alu -3 309 7 1522 155 0 53 chr3 135062789 135063076 -82974082 + AluJb SINE Alu 36 308 0 589 120 213 0 chr3 135063147 135063255 -82973903 - FLAM_C SINE Alu -10 133 3 266 250 37 28 chr3 135063257 135063365 -82973793 + L1ME LINE L1 5653 5761 -360 1613 171 45 7 chr3 135063706 135063993 -82973165 - AluSx SINE Alu -14 298 1 563 132 19 9 chr3 135064553 135064659 -82972499 + MER5A DNA MER1_type 6 112 -77 225 0 0 0 chr3 135064659 135064684 -82972474 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1363 100 0 0 chr3 135064686 135064856 -82972302 - AluSp SINE Alu -26 287 118 1314 202 52 95 chr3 135064884 135065242 -82971916 - MER113 DNA MER1_type? -27 494 122 1696 176 3 39 chr3 135065242 135065554 -82971604 - AluJo SINE Alu -6 306 6 1314 202 52 95 chr3 135065554 135065585 -82971573 - MER113 DNA MER1_type? -399 122 91 1933 143 3 31 chr3 135065585 135065906 -82971252 + AluJo SINE Alu 1 312 0 1314 202 52 95 chr3 135065906 135066031 -82971127 - MER113 DNA MER1_type? -430 91 1 856 257 51 41 chr3 135066524 135066765 -82970393 + L1ME4a LINE L1 5462 5699 -422 2399 64 4 0 chr3 135066765 135067081 -82970077 - AluSp SINE Alu 0 317 1 856 257 51 41 chr3 135067081 135067112 -82970046 + L1ME4a LINE L1 5699 5728 -393 946 132 0 0 chr3 135067112 135067241 -82969917 - FLAM_C SINE Alu -2 131 3 856 257 51 41 chr3 135067241 135067355 -82969803 + L1ME4a LINE L1 5728 5854 -267 316 174 12 81 chr3 135067384 135067470 -82969688 - L2 LINE L2 -1 3312 3233 189 225 0 0 chr3 135067616 135067656 -82969502 + L2 LINE L2 3270 3309 -4 871 122 0 0 chr3 135068139 135068254 -82968904 + AluSq/x SINE Alu 1 115 -197 735 79 48 0 chr3 135068256 135068382 -82968776 + GA-rich Low_complexity Low_complexity 2 133 0 1088 167 11 0 chr3 135068382 135068562 -82968596 + AluSg/x SINE Alu 129 310 -2 3541 171 29 22 chr3 135068773 135069129 -82968029 + L1MB7 LINE L1 5441 5793 -391 1606 165 162 3 chr3 135069129 135069444 -82967714 - MER47A DNA MER2_type 0 366 2 3541 171 29 22 chr3 135069444 135069748 -82967410 + L1MB7 LINE L1 5793 6109 -75 1960 149 34 0 chr3 135069748 135070044 -82967114 - AluSx SINE Alu -6 306 1 3541 171 29 22 chr3 135070044 135070112 -82967046 + L1MB7 LINE L1 6109 6175 -9 8194 200 18 65 chr3 135070263 135070576 -82966582 - Cheshire DNA MER1_type -545 1875 1549 1992 120 18 0 chr3 135070576 135070852 -82966306 + AluSx SINE Alu 4 284 -28 257 0 30 0 chr3 135070857 135070890 -82966268 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 8194 200 18 65 chr3 135070890 135071413 -82965745 - Cheshire DNA MER1_type -875 1545 999 355 133 0 0 chr3 135071413 135071473 -82965685 - L1MB7 LINE L1 -12 6172 6113 8194 200 18 65 chr3 135071473 135072216 -82964942 - Cheshire DNA MER1_type -1421 999 395 2077 135 3 0 chr3 135072216 135072682 -82964476 + AluSx SINE Alu 1 467 0 8194 200 18 65 chr3 135072682 135073060 -82964098 - Cheshire DNA MER1_type -2025 395 1 199 287 217 0 chr3 135073321 135073436 -82963722 - MIR SINE MIR -122 140 1 299 277 42 78 chr3 135073659 135073825 -82963333 + MIR3 SINE MIR 49 208 0 225 274 73 89 chr3 135074167 135074291 -82962867 - L2 LINE L2 -8 3264 3143 530 233 94 25 chr3 135074785 135074944 -82962214 - MIR SINE MIR -53 209 40 187 311 148 15 chr3 135075422 135075557 -82961601 + L3 LINE CR1 1424 1576 -1 5916 144 20 43 chr3 135075582 135076420 -82960738 - L1PB3 LINE L1 -1 6153 5297 2024 143 40 0 chr3 135076420 135076720 -82960438 - AluJb SINE Alu 0 312 1 5916 144 20 43 chr3 135076720 135077838 -82959320 - L1PB3 LINE L1 -857 5297 4227 2223 91 38 0 chr3 135078241 135078528 -82958630 + AluSg SINE Alu 1 298 -12 361 172 103 60 chr3 135078607 135078723 -82958435 - L1ME4a LINE L1 -40 6081 5961 455 302 22 0 chr3 135078788 135078967 -82958191 + MER5A DNA MER1_type 1 183 -6 373 198 170 0 chr3 135078981 135079087 -82958071 + MER5C DNA MER1_type 1 124 -200 25 31 0 0 chr3 135079175 135079207 -82957951 + AT_rich Low_complexity Low_complexity 1 32 0 1725 152 61 0 chr3 135079302 135079579 -82957579 + AluJo SINE Alu 1 294 -18 2108 118 10 10 chr3 135079622 135079928 -82957230 + AluSx SINE Alu 1 306 -6 274 29 0 0 chr3 135079928 135079963 -82957195 + MER5C DNA MER1_type 290 324 0 305 287 213 15 chr3 135080124 135080326 -82956832 - L2 LINE L2 -531 2783 2542 929 40 0 0 chr3 135080669 135080770 -82956388 - AluY SINE Alu -190 121 21 2259 110 3 7 chr3 135081190 135081500 -82955658 + AluSq SINE Alu 1 309 -4 525 139 0 0 chr3 135081589 135081718 -82955440 - AluSg/x SINE Alu 0 332 204 236 211 19 0 chr3 135081747 135081799 -82955359 - L1ME3 LINE L1 -4 6158 6106 2313 83 0 0 chr3 135081995 135082307 -82954851 + AluY SINE Alu 1 311 0 1221 155 58 54 chr3 135082811 135083088 -82954070 + L1MB8 LINE L1 5107 5384 -762 1595 140 163 63 chr3 135083088 135083135 -82954023 - MSTB1 LTR MaLR 0 432 391 2259 130 48 20 chr3 135083135 135083489 -82953669 - THE1B LTR MaLR 0 364 1 1595 140 163 63 chr3 135083489 135083837 -82953321 - MSTB1 LTR MaLR -41 391 1 3837 145 65 50 chr3 135083837 135083956 -82953202 + L1MB8 LINE L1 5380 5496 -682 2079 111 7 4 chr3 135083956 135084259 -82952899 + AluSx SINE Alu 2 305 0 3837 145 65 50 chr3 135084259 135084918 -82952240 + L1MB8 LINE L1 5496 6171 -7 237 328 25 25 chr3 135085936 135086055 -82951103 + MIR SINE MIR 16 134 -74 223 200 40 0 chr3 135086054 135086104 -82951054 - MER5A DNA MER1_type -69 120 69 * 228 200 18 18 chr3 135086144 135086199 -82950959 + MIR3 SINE MIR 151 205 -3 1807 161 0 41 chr3 135087106 135087453 -82949705 + AluJb SINE Alu 1 312 0 1704 149 29 62 chr3 135088342 135088651 -82948507 + AluJb SINE Alu 1 299 -13 2314 117 0 0 chr3 135088651 135089057 -82948101 + AluSc SINE Alu 1 406 0 193 298 83 0 chr3 135092666 135092750 -82944408 - MIR SINE MIR -79 183 93 578 283 30 17 chr3 135093185 135093422 -82943736 - MARNA DNA Mariner -122 464 225 1275 188 91 16 chr3 135095542 135095850 -82941308 - L1MA9 LINE L1 -36 6276 5946 395 128 0 0 chr3 135095995 135096073 -82941085 + (T)n Simple_repeat Simple_repeat 1 78 0 268 233 19 32 chr3 135096073 135096374 -82940784 + CT-rich Low_complexity Low_complexity 1 297 0 21 0 0 0 chr3 135096753 135096774 -82940384 + AT_rich Low_complexity Low_complexity 1 21 0 527 112 37 9 chr3 135096833 135096940 -82940218 + GA-rich Low_complexity Low_complexity 2 111 0 1982 94 4 8 chr3 135096960 135097216 -82939942 - AluY SINE Alu -2 309 55 757 165 98 0 chr3 135097216 135097349 -82939809 + L1MC1 LINE L1 6182 6327 -6 1825 164 3 3 chr3 135097358 135097645 -82939513 - AluJb SINE Alu -25 287 1 398 343 35 12 chr3 135097933 135098105 -82939053 - MIR3 SINE MIR 0 208 33 261 280 43 0 chr3 135098331 135098424 -82938734 + MIR3 SINE MIR 77 173 -35 230 308 0 0 chr3 135098448 135098500 -82938658 + MER58B DNA MER1_type 1 52 -289 337 236 0 28 chr3 135098505 135098577 -82938581 + MER58B DNA MER1_type 223 292 -49 729 226 0 0 chr3 135099810 135099943 -82937215 - FLAM_C SINE Alu 0 133 1 1552 181 0 10 chr3 135100107 135100399 -82936759 - AluJo SINE Alu -13 299 11 21 36 0 0 chr3 135100650 135100678 -82936480 + AT_rich Low_complexity Low_complexity 1 28 0 889 189 6 6 chr3 135100903 135101067 -82936091 - FRAM SINE Alu -2 164 1 235 258 67 11 chr3 135101434 135101523 -82935635 - MIR SINE MIR -92 170 77 2105 112 0 3 chr3 135102878 135103172 -82933986 + AluSc SINE Alu 1 293 -16 2156 101 0 0 chr3 135103193 135103481 -82933677 + AluSq SINE Alu 1 288 -25 2115 84 7 7 chr3 135103490 135103803 -82933355 + AluSq SINE Alu 1 313 0 2354 93 0 0 chr3 135104011 135104324 -82932834 + AluSq SINE Alu 1 313 0 181 111 83 28 chr3 135104356 135104392 -82932766 - L2 LINE L2 -15 3298 3261 * 334 279 177 13 chr3 135104360 135104518 -82932640 - MIR SINE MIR -12 250 67 467 274 55 27 chr3 135105238 135105384 -82931774 + MIR3 SINE MIR 19 168 -40 2105 107 0 0 chr3 135105410 135105701 -82931457 + AluSx SINE Alu 1 291 -21 980 272 133 29 chr3 135105850 135106473 -82930685 - L2 LINE L2 -4 3309 2640 201 74 0 0 chr3 135107936 135107963 -82929195 + (A)n Simple_repeat Simple_repeat 1 27 0 1965 120 38 0 chr3 135108143 135108434 -82928724 + AluSp SINE Alu 1 302 -11 1960 126 3 0 chr3 135108713 135109007 -82928151 + AluSq SINE Alu 1 295 -18 237 182 23 0 chr3 135109047 135109091 -82928067 - MIR3 SINE MIR -7 201 157 24 53 0 0 chr3 135110469 135110507 -82926651 + GC_rich Low_complexity Low_complexity 1 38 0 873 192 98 23 chr3 135110891 135111157 -82926001 + MER33 DNA MER1_type 39 324 0 404 260 0 40 chr3 135111219 135111319 -82925839 - MIR3 SINE MIR -3 205 110 21 57 0 0 chr3 135111452 135111487 -82925671 + AT_rich Low_complexity Low_complexity 1 35 0 227 281 0 0 chr3 135112117 135112174 -82924984 + CT-rich Low_complexity Low_complexity 2 58 0 356 245 116 58 chr3 135112318 135112551 -82924607 + MIR SINE MIR 3 257 0 2249 99 0 0 chr3 135112551 135112853 -82924305 + AluSg SINE Alu 2 303 -7 1572 164 57 17 chr3 135113689 135113988 -82923170 + AluJo SINE Alu 1 311 -1 2025 117 0 10 chr3 135114024 135114324 -82922834 + AluSg SINE Alu 1 297 -13 1968 126 10 0 chr3 135114541 135114842 -82922316 + AluSx SINE Alu 1 304 -8 200 245 120 71 chr3 135114854 135115038 -82922120 - L2 LINE L2 -1211 2103 1911 429 235 244 30 chr3 135115323 135115553 -82921605 + MLT1H LTR MaLR 271 549 0 1645 161 30 0 chr3 135115607 135115874 -82921284 - AluJb SINE Alu -37 275 1 923 161 6 0 chr3 135117252 135117413 -82919745 - AluJb SINE Alu -17 295 134 661 143 34 0 chr3 135117644 135117763 -82919395 + AluSg/x SINE Alu 186 308 -2 1271 154 29 5 chr3 135117763 135117971 -82919187 + MLT1A1 LTR MaLR 153 365 0 1702 159 14 0 chr3 135118080 135118393 -82918765 + AluJb SINE Alu 1 317 0 264 314 92 74 chr3 135118403 135118632 -82918526 - L2 LINE L2 -400 2914 2682 754 250 199 49 chr3 135119199 135119631 -82917527 - MLT1K LTR MaLR -1 587 91 1241 172 0 9 chr3 135119798 135120025 -82917133 + AluJo SINE Alu 86 310 -2 210 248 18 44 chr3 135121495 135121608 -82915550 + CT-rich Low_complexity Low_complexity 5 114 0 738 150 18 0 chr3 135121798 135121911 -82915247 - FLAM_C SINE Alu -16 127 13 1921 132 0 7 chr3 135121960 135122255 -82914903 + AluJb SINE Alu 10 302 -10 216 0 0 0 chr3 135122275 135122299 -82914859 + (GA)n Simple_repeat Simple_repeat 2 25 0 266 318 45 23 chr3 135122487 135122575 -82914583 - MIR3 SINE MIR -31 177 88 206 258 55 86 chr3 135122829 135122957 -82914201 - MIR3 SINE MIR -2 206 83 247 238 19 67 chr3 135123421 135123526 -82913632 - L1MC4 LINE L1 0 8042 7943 2133 128 0 0 chr3 135123864 135124176 -82912982 + AluSx SINE Alu 1 312 0 345 82 0 0 chr3 135124466 135124515 -82912643 + (TG)n Simple_repeat Simple_repeat 1 49 0 1495 200 4 0 chr3 135124515 135124795 -82912363 - AluJb SINE Alu -31 281 1 1676 184 3 3 chr3 135124809 135125103 -82912055 - AluJo SINE Alu -17 295 2 707 319 172 24 chr3 135125121 135125575 -82911583 - L3 LINE CR1 -625 952 432 2378 64 0 16 chr3 135125777 135126091 -82911067 - AluY SINE Alu -2 309 1 1683 186 129 30 chr3 135126127 135126488 -82910670 - Charlie2 DNA MER1_type -456 2406 1978 1822 149 0 0 chr3 135126488 135126795 -82910363 + AluSx SINE Alu 1 307 0 1683 186 129 30 chr3 135126795 135126936 -82910222 - Charlie2 DNA MER1_type -884 1978 1852 253 190 155 120 chr3 135126942 135127018 -82910140 - Charlie2 DNA MER1_type -2546 316 244 2450 52 13 3 chr3 135127018 135127326 -82909832 + AluY SINE Alu 1 311 0 253 190 155 120 chr3 135127326 135127391 -82909767 - Charlie2 DNA MER1_type -2618 244 170 267 321 153 52 chr3 135127602 135127851 -82909307 - L2 LINE L2 -4 3268 2995 1778 166 0 7 chr3 135127872 135128180 -82908978 + AluJo SINE Alu 5 310 -2 22 0 0 0 chr3 135128181 135128203 -82908955 + AT_rich Low_complexity Low_complexity 1 22 0 409 230 89 7 chr3 135128375 135128523 -82908635 + L1ME3A LINE L1 5943 6098 -64 24 32 0 0 chr3 135128523 135128554 -82908604 + AT_rich Low_complexity Low_complexity 1 31 0 3388 201 79 30 chr3 135128827 135129807 -82907351 + L1ME1 LINE L1 4488 5581 -585 2421 63 3 0 chr3 135129807 135130106 -82907052 + AluY SINE Alu 1 300 -11 3388 201 79 30 chr3 135130106 135130710 -82906448 + L1ME1 LINE L1 5581 6154 -12 413 329 202 8 chr3 135130710 135130962 -82906196 + L1ME4a LINE L1 5620 5920 -201 190 365 35 0 chr3 135131274 135131359 -82905799 + MIR SINE MIR 67 154 -108 399 268 89 8 chr3 135131382 135131505 -82905653 - MIR SINE MIR -65 197 65 200 31 62 0 chr3 135131991 135132023 -82905135 + A-rich Low_complexity Low_complexity 5 38 0 516 289 121 34 chr3 135132037 135132276 -82904882 + MIR SINE MIR 3 262 0 2443 234 58 39 chr3 135132399 135132544 -82904614 + L1ME1 LINE L1 5421 5562 -604 3041 87 11 37 chr3 135132544 135133004 -82904154 + LTR7 LTR ERV1 1 448 -2 2443 234 58 39 chr3 135133004 135133581 -82903577 + L1ME1 LINE L1 5562 6157 -9 525 172 21 0 chr3 135133581 135133674 -82903484 - AluJ/FLAM SINE Alu -216 96 2 627 342 27 16 chr3 135133697 135133954 -82903204 + MIR SINE MIR 2 261 -1 360 277 69 10 chr3 135134016 135134117 -82903041 + L1ME4a LINE L1 6007 6113 -8 584 304 230 18 chr3 135135450 135135594 -82901564 - L3 LINE CR1 -24 1553 1441 2091 120 0 10 chr3 135135594 135135914 -82901244 + AluSx SINE Alu 1 312 0 584 304 230 18 chr3 135135914 135136316 -82900842 - L3 LINE CR1 -136 1441 891 456 286 97 5 chr3 135137206 135137401 -82899757 + MIR SINE MIR 41 257 -5 238 306 73 40 chr3 135137557 135137681 -82899477 + L2 LINE L2 3184 3311 -2 246 108 0 235 chr3 135138188 135138290 -82898868 - MER116 DNA Mariner -2 78 1 283 334 47 65 chr3 135138641 135138957 -82898201 - L2 LINE L2 -14 3258 2951 1716 167 23 26 chr3 135138957 135139305 -82897853 + L1MC1 LINE L1 5987 6333 0 283 334 47 65 chr3 135139305 135139437 -82897721 - L2 LINE L2 -321 2951 2818 549 179 35 0 chr3 135139452 135139597 -82897561 + GA-rich Low_complexity Low_complexity 4 153 0 206 252 168 19 chr3 135139644 135139751 -82897407 - L2 LINE L2 -340 2973 2851 22 0 0 0 chr3 135141099 135141121 -82896037 + AT_rich Low_complexity Low_complexity 1 22 0 912 161 0 13 chr3 135141126 135141281 -82895877 + AluSq SINE Alu 1 153 -160 462 169 0 0 chr3 135141281 135141364 -82895794 + AluJ/FRAM SINE Alu 226 308 -4 285 280 123 71 chr3 135141429 135141607 -82895551 + MIR SINE MIR 5 184 -63 323 320 104 8 chr3 135142951 135143076 -82894082 + L1MC5 LINE L1 7751 7887 -74 317 225 127 80 chr3 135143111 135143324 -82893834 - L1ME4a LINE L1 -16 6105 5883 2025 83 24 14 chr3 135143499 135143788 -82893370 - AluSc SINE Alu -17 292 1 1368 146 13 4 chr3 135144455 135144688 -82892470 + L1MB4 LINE L1 5591 5825 -355 577 190 0 0 chr3 135144695 135144795 -82892363 + FLAM_C SINE Alu 9 108 -35 840 88 0 40 chr3 135144941 135145066 -82892092 + FLAM_C SINE Alu 12 131 -12 210 91 0 0 chr3 135145664 135145697 -82891461 + (CGGGGG)n Simple_repeat Simple_repeat 3 35 0 337 324 36 9 chr3 135145975 135146086 -82891072 + MIR3 SINE MIR 85 198 -10 485 286 40 30 chr3 135146438 135146637 -82890521 - MIR SINE MIR -28 234 34 2215 87 0 7 chr3 135146976 135147274 -82889884 + AluSg SINE Alu 1 296 -14 861 173 0 0 chr3 135147277 135147410 -82889748 - AluJo/FLAM SINE Alu -169 133 1 224 250 114 53 chr3 135148822 135148954 -82888204 + MIR3 SINE MIR 3 142 -66 2077 118 0 3 chr3 135149075 135149371 -82887787 - AluSx SINE Alu -17 295 1 264 191 0 0 chr3 135149953 135150000 -82887158 + L1MB7 LINE L1 5858 5904 -280 * 595 186 29 21 chr3 135149972 135150133 -82887025 + L1ME1 LINE L1 5838 5988 -178 951 235 81 62 chr3 135150136 135150282 -82886876 + MLT1I LTR MaLR 16 158 -251 2084 114 0 13 chr3 135150282 135150580 -82886578 - AluSg SINE Alu -16 294 1 951 235 81 62 chr3 135150580 135150803 -82886355 + MLT1I LTR MaLR 158 392 -17 1515 185 12 52 chr3 135150911 135151236 -82885922 - AluJo SINE Alu 0 312 1 258 333 88 12 chr3 135151348 135151519 -82885639 + MIR3 SINE MIR 8 165 -43 1815 156 7 3 chr3 135151759 135152060 -82885098 + AluJb SINE Alu 1 302 -10 278 267 67 75 chr3 135152649 135152769 -82884389 - MIR3 SINE MIR -48 160 88 186 259 62 74 chr3 135152832 135152913 -82884245 + MIR SINE MIR 20 99 -163 2143 94 7 7 chr3 135152996 135153293 -82883865 + AluSq SINE Alu 1 297 -16 2136 118 3 0 chr3 135153589 135153893 -82883265 - AluSx SINE Alu -7 305 1 439 353 10 15 chr3 135153902 135154103 -82883055 - LTR67 LTR ERVL -356 201 2 2293 88 0 3 chr3 135154351 135154657 -82882501 + AluSx SINE Alu 1 305 -7 309 159 72 14 chr3 135154657 135154716 -82882442 + L1MCa LINE L1 1998 2063 -4363 471 192 74 89 chr3 135154724 135154927 -82882231 + Tigger7 DNA MER2_type 2292 2491 0 1080 145 0 6 chr3 135155132 135155311 -82881847 + L1MA9 LINE L1 3950 4127 -2019 2090 108 0 3 chr3 135155311 135155607 -82881551 + AluSg SINE Alu 1 295 -15 393 197 40 0 chr3 135155769 135155845 -82881313 - MIR SINE MIR -74 188 110 2625 173 49 24 chr3 135156328 135156893 -82880265 + L1MA9 LINE L1 5682 6257 -55 1471 96 0 5 chr3 135156893 135157090 -82880068 - AluSx SINE Alu -114 198 3 714 238 6 30 chr3 135157101 135157269 -82879889 - FRAM SINE Alu -2 164 1 2619 115 28 7 chr3 135157291 135157718 -82879440 - L1MC3 LINE L1 -22 7763 7328 1915 152 3 3 chr3 135158873 135159182 -82877976 - AluSx SINE Alu -3 309 1 3441 219 27 45 chr3 135159450 135159937 -82877221 - L1ME1 LINE L1 -5 6161 5695 1870 165 0 0 chr3 135159937 135160234 -82876924 + AluSx SINE Alu 1 297 -15 3441 219 27 45 chr3 135160234 135160678 -82876480 - L1ME1 LINE L1 -471 5695 5245 854 153 11 68 chr3 135161777 135161953 -82875205 - FRAM SINE Alu -9 167 2 441 336 25 17 chr3 135161959 135162200 -82874958 - L1ME4a LINE L1 -294 5827 5585 29 0 0 0 chr3 135163181 135163210 -82873948 + AT_rich Low_complexity Low_complexity 1 29 0 281 244 12 24 chr3 135163684 135163766 -82873392 + C-rich Low_complexity Low_complexity 2 82 0 1829 145 10 3 chr3 135164217 135164527 -82872631 - AluJo SINE Alu 0 312 1 455 206 191 0 chr3 135164844 135164975 -82872183 - MIR SINE MIR -3 259 104 4358 84 31 2 chr3 135165298 135165881 -82871277 + MER4A LTR ERV1 1 600 0 1655 130 11 22 chr3 135166046 135166323 -82870835 + AluSx SINE Alu 7 280 -32 189 0 0 0 chr3 135166323 135166344 -82870814 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 335 257 41 20 chr3 135166509 135166683 -82870475 - AluSp/q SINE Alu 0 303 201 660 121 0 0 chr3 135167078 135167169 -82869989 - AluS SINE Alu -220 92 2 730 122 0 68 chr3 135167170 135167279 -82869879 + L1MB4 LINE L1 6033 6131 -49 1703 122 32 55 chr3 135167279 135167590 -82869568 + AluJb SINE Alu 1 304 -8 730 122 0 68 chr3 135167590 135167627 -82869531 + L1MB4 LINE L1 6131 6169 -11 1950 137 0 10 chr3 135167999 135168298 -82868860 + AluSx SINE Alu 1 296 -16 227 196 109 0 chr3 135168777 135168823 -82868335 + LTR29 LTR ERV1 572 622 0 1643 118 56 15 chr3 135169165 135169435 -82867723 - AluSx SINE Alu -31 281 1 1126 159 16 6 chr3 135171168 135171370 -82865788 + L1ME LINE L1 5477 5679 -516 22 0 0 0 chr3 135272703 135272725 -82764433 + AT_rich Low_complexity Low_complexity 1 22 0 1800 233 35 58 chr3 135272800 135273133 -82764025 - L1M4 LINE L1 -4919 1936 1597 2214 120 7 0 chr3 135273133 135273434 -82763724 - AluSq SINE Alu -10 303 1 1800 233 35 58 chr3 135273434 135273842 -82763316 - L1M4 LINE L1 -5258 1597 1206 351 0 0 0 chr3 135274486 135274525 -82762633 + (TG)n Simple_repeat Simple_repeat 1 39 0 294 323 65 0 chr3 135274707 135274831 -82762327 + L1ME LINE L1 5675 5806 -364 34 55 0 0 chr3 135274951 135275006 -82762152 + AT_rich Low_complexity Low_complexity 1 55 0 459 0 0 0 chr3 135275501 135275552 -82761606 + (CA)n Simple_repeat Simple_repeat 2 52 0 2112 114 0 23 chr3 135275670 135275978 -82761180 - AluSc SINE Alu -8 301 1 29 47 0 0 chr3 135276036 135276079 -82761079 + AT_rich Low_complexity Low_complexity 1 43 0 273 280 37 19 chr3 135276123 135276230 -82760928 - L2 LINE L2 -76 3237 3129 1107 277 48 27 chr3 135276566 135277089 -82760069 - L2 LINE L2 0 3313 2784 661 256 43 93 chr3 135277284 135277585 -82759573 - MLT1J2 LTR MaLR -118 332 47 2972 265 113 4 chr3 135277590 135278672 -82758486 - L2 LINE L2 -695 2619 1420 677 340 42 25 chr3 135278772 135279252 -82757906 - L2 LINE L2 -2297 1017 530 218 320 145 21 chr3 135279344 135279578 -82757580 - L2 LINE L2 -80 3233 2971 1319 138 25 0 chr3 135279976 135280179 -82756979 + L1PB4 LINE L1 5887 6094 -62 28 0 0 0 chr3 135280184 135280212 -82756946 + AT_rich Low_complexity Low_complexity 1 28 0 3383 212 48 33 chr3 135281816 135282872 -82754286 + L1MEc LINE L1 1874 2908 -3307 683 183 0 63 chr3 135282872 135283014 -82754144 + FLAM_A SINE Alu 1 133 0 3383 212 48 33 chr3 135283014 135283293 -82753865 + L1MEc LINE L1 2908 3181 -3034 692 122 0 0 chr3 135283293 135283400 -82753758 + AluSg/x SINE Alu 200 306 -4 325 253 63 11 chr3 135285561 135285656 -82751502 - MER117 DNA MER1_type -22 175 76 545 117 0 125 chr3 135285672 135285688 -82751470 - L1MB3 LINE L1 -7 6176 6160 2290 110 7 0 chr3 135285688 135285987 -82751171 + AluSx SINE Alu 1 301 -11 545 117 0 125 chr3 135285987 135286090 -82751068 - L1MB3 LINE L1 -23 6160 6072 213 39 0 0 chr3 135287077 135287103 -82750055 + (TCCA)n Simple_repeat Simple_repeat 1 26 0 2068 112 0 7 chr3 135288052 135288338 -82748820 - AluSx SINE Alu -18 294 11 2424 102 0 3 chr3 135288862 135289175 -82747983 + AluSq SINE Alu 2 313 0 1851 148 0 32 chr3 135290939 135291223 -82745935 + AluJb SINE Alu 14 288 -24 34 24 0 0 chr3 135291224 135291265 -82745893 + AT_rich Low_complexity Low_complexity 1 41 0 1945 145 0 17 chr3 135291963 135292260 -82744898 + AluJb SINE Alu 1 292 -20 747 107 29 0 chr3 135292718 135292821 -82744337 - U6 snRNA snRNA 0 107 2 486 306 47 12 chr3 135293699 135293869 -82743289 - MIR SINE MIR -79 183 8 657 293 38 25 chr3 135295159 135295398 -82741760 - MIR SINE MIR -19 243 2 741 288 147 12 chr3 135295505 135295935 -82741223 + L1ME4a LINE L1 5607 6094 -27 201 39 0 0 chr3 135295964 135295990 -82741168 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 339 255 88 54 chr3 135296376 135296615 -82740543 + HAL1 LINE L1 838 1084 -1423 317 159 86 33 chr3 135296622 135296645 -82740513 + AluSg/x SINE Alu 134 154 -148 595 169 29 88 chr3 135296645 135296713 -82740445 + AluJo/FLAM SINE Alu 1 59 -243 1983 148 20 3 chr3 135296713 135297016 -82740142 + AluSx SINE Alu 1 308 -4 595 169 29 88 chr3 135297016 135297083 -82740075 + AluJo/FLAM SINE Alu 59 128 -174 317 159 86 33 chr3 135297083 135297136 -82740022 + AluSg/x SINE Alu 154 190 -112 * 2058 109 24 28 chr3 135297095 135297433 -82739725 - THE1B LTR MaLR -21 334 1 2268 107 3 10 chr3 135297938 135298247 -82738911 - AluSx SINE Alu -5 307 1 415 234 91 19 chr3 135298586 135298740 -82738418 + MER103 DNA DNA 1 165 -1 2279 117 0 3 chr3 135298897 135299206 -82737952 + AluSx SINE Alu 1 308 -4 617 285 16 11 chr3 135299214 135299400 -82737758 - MIR3 SINE MIR -6 202 16 379 271 68 0 chr3 135300564 135300697 -82736461 + MIR SINE MIR 111 252 -10 383 206 65 0 chr3 135301045 135301137 -82736021 + MIR SINE MIR 63 160 -102 580 242 168 0 chr3 135301139 135301288 -82735870 - MER69A DNA AcHobo -3 174 1 25 99 0 0 chr3 135301425 135301506 -82735652 + AT_rich Low_complexity Low_complexity 1 81 0 2275 92 18 0 chr3 135301507 135301791 -82735367 - AluSc SINE Alu -20 289 1 2874 7 0 0 chr3 135301796 135302101 -82735057 - AluYa5 SINE Alu -6 305 1 1200 144 0 0 chr3 135302101 135302268 -82734890 - AluSg/x SINE Alu -12 298 132 223 267 38 57 chr3 135303535 135303640 -82733518 + MIR3 SINE MIR 61 163 -45 2154 138 0 22 chr3 135303924 135304243 -82732915 + AluSx SINE Alu 1 312 0 497 228 95 38 chr3 135304954 135305009 -82732149 - MER45A DNA AcHobo -1414 167 117 2265 113 0 3 chr3 135305009 135305309 -82731849 - AluSx SINE Alu -13 299 1 497 228 95 38 chr3 135305309 135305411 -82731747 - MER45A DNA AcHobo -1464 117 1 1142 295 163 23 chr3 135305993 135306811 -82730347 - L2 LINE L2 -672 2642 1711 2221 237 58 37 chr3 135306856 135306966 -82730192 - L1ME1 LINE L1 -5 6161 6055 294 29 0 0 chr3 135306966 135307001 -82730157 + (CA)n Simple_repeat Simple_repeat 2 36 0 1409 179 48 45 chr3 135307002 135307145 -82730013 - AluJb SINE Alu -20 292 151 1651 89 0 0 chr3 135307145 135307347 -82729811 - AluSx SINE Alu -110 202 1 1409 179 48 45 chr3 135307347 135307494 -82729664 - AluJb SINE Alu -161 151 1 2221 237 58 37 chr3 135307494 135307724 -82729434 - L1ME1 LINE L1 -111 6055 5831 2122 121 0 26 chr3 135307724 135308029 -82729129 - AluSx SINE Alu -15 297 1 2221 237 58 37 chr3 135308029 135308380 -82728778 - L1ME1 LINE L1 -335 5831 5453 481 110 0 27 chr3 135309060 135309133 -82728025 + FLAM SINE Alu 63 133 -10 25 0 0 0 chr3 135310841 135310866 -82726292 + AT_rich Low_complexity Low_complexity 1 25 0 299 241 0 0 chr3 135311517 135311596 -82725562 + (CA)n Simple_repeat Simple_repeat 1 79 0 2190 116 3 28 chr3 135311739 135312059 -82725099 + AluSx SINE Alu 1 312 0 268 280 32 24 chr3 135312187 135312312 -82724846 + L1ME4a LINE L1 5927 6052 -69 1307 184 117 0 chr3 135312345 135312465 -82724693 + AluJo SINE Alu 1 106 -206 396 0 0 0 chr3 135312465 135312509 -82724649 + (CA)n Simple_repeat Simple_repeat 2 45 0 1307 184 117 0 chr3 135312509 135312627 -82724531 + AluJo SINE Alu 106 267 -45 229 268 0 18 chr3 135313912 135313968 -82723190 - MIR SINE MIR -76 132 78 970 192 0 33 chr3 135314321 135314503 -82722655 - FRAM SINE Alu 0 176 1 208 97 0 81 chr3 135315281 135315343 -82721815 + (CTGGGG)n Simple_repeat Simple_repeat 5 61 0 223 333 27 0 chr3 135316186 135316261 -82720897 + MIR SINE MIR 36 112 -96 210 337 30 0 chr3 135316279 135316380 -82720778 - MER5A DNA MER1_type -83 106 3 227 314 37 43 chr3 135316635 135316810 -82720348 - MIR3 SINE MIR -1 207 32 527 136 117 10 chr3 135317840 135317943 -82719215 - MIR SINE MIR -41 221 108 310 285 161 7 chr3 135318671 135318808 -82718350 - MIR3 SINE MIR -2 206 49 267 346 24 39 chr3 135318832 135318959 -82718199 + L2 LINE L2 3095 3219 -53 2122 0 187 10 chr3 135318960 135319198 -82717960 + L1MB4 LINE L1 5676 5870 -310 1811 136 41 58 chr3 135319198 135319436 -82717722 - MER44D DNA MER2_type -1882 609 368 2024 153 0 6 chr3 135319436 135319749 -82717409 - AluJb SINE Alu -1 311 1 1811 136 41 58 chr3 135319749 135319855 -82717303 - MER44D DNA MER2_type -2123 368 1 2122 0 187 10 chr3 135319855 135320079 -82717079 + L1MB4 LINE L1 5870 6180 0 210 37 0 0 chr3 135320086 135320113 -82717045 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 989 150 0 18 chr3 135320306 135320473 -82716685 - AluJb SINE Alu -60 252 89 622 345 40 4 chr3 135321526 135321775 -82715383 - MIR SINE MIR 0 262 5 314 380 12 6 chr3 135323304 135323467 -82713691 + GA-rich Low_complexity Low_complexity 6 169 0 199 222 12 111 chr3 135324487 135324568 -82712590 - MER5A DNA MER1_type 0 189 117 204 174 0 43 chr3 135324772 135324818 -82712340 + CT-rich Low_complexity Low_complexity 1 44 0 555 237 93 0 chr3 135325523 135325662 -82711496 - MIR SINE MIR -64 198 47 314 306 104 15 chr3 135326281 135326415 -82710743 - MIR SINE MIR -49 213 68 261 306 71 0 chr3 135326468 135326566 -82710592 + L2 LINE L2 3202 3306 -7 214 330 80 27 chr3 135326799 135326911 -82710247 - L2 LINE L2 -2 3270 3153 774 117 0 0 chr3 135327240 135327375 -82709783 - AluSx SINE Alu 0 317 183 584 182 0 0 chr3 135327384 135327483 -82709675 - Tigger7 DNA MER2_type -268 2319 2221 1399 111 0 0 chr3 135327486 135327666 -82709492 - AluSx SINE Alu -132 180 1 233 235 143 20 chr3 135327689 135327787 -82709371 - MIR SINE MIR -67 141 32 678 288 82 12 chr3 135327936 135328179 -82708979 + MIR SINE MIR 1 260 -2 2203 142 17 0 chr3 135328189 135328542 -82708616 - Tigger7 DNA MER2_type -7 2480 2122 1341 201 45 14 chr3 135328540 135328829 -82708329 - Tigger7 DNA MER2_type -2189 298 1 * 2328 57 71 0 chr3 135329108 135329391 -82707767 + AluY SINE Alu 1 303 -8 300 291 29 100 chr3 135330709 135330919 -82706239 + L1ME4a LINE L1 5798 5992 -129 347 219 0 0 chr3 135330928 135330992 -82706166 - Tigger5 DNA MER2_type 0 2323 2260 449 340 125 18 chr3 135331171 135331571 -82705587 + L2 LINE L2 2825 3267 -5 2407 102 0 0 chr3 135331833 135332137 -82705021 - AluSx SINE Alu -6 306 3 1036 252 34 37 chr3 135332804 135332887 -82704271 + HAL1 LINE L1 1 83 -2424 911 122 0 0 chr3 135332887 135333010 -82704148 - FLAM_C SINE Alu -6 127 5 1036 252 34 37 chr3 135333010 135333251 -82703907 + HAL1 LINE L1 83 324 -2183 347 58 0 19 chr3 135333254 135333306 -82703852 - Alu SINE Alu -249 53 3 1784 141 60 11 chr3 135333576 135333860 -82703298 - AluJo SINE Alu -12 300 3 687 188 84 7 chr3 135333889 135334043 -82703115 + MIR SINE MIR 92 257 -5 298 296 35 49 chr3 135335848 135335990 -82701168 - L2 LINE L2 0 3272 3133 202 279 29 29 chr3 135336501 135336605 -82700553 + (CAGAGA)n Simple_repeat Simple_repeat 2 105 0 * 236 341 0 0 chr3 135336528 135336610 -82700548 + GA-rich Low_complexity Low_complexity 3 84 0 1895 167 23 10 chr3 135336639 135336944 -82700214 + AluJb SINE Alu 1 309 -3 2386 59 40 20 chr3 135336944 135337247 -82699911 + AluY SINE Alu 1 310 -1 619 279 99 15 chr3 135337857 135338058 -82699100 + MIR SINE MIR 25 242 -20 587 157 84 60 chr3 135338383 135338549 -82698609 - MER5B DNA MER1_type -4 174 5 219 306 0 72 chr3 135338660 135338771 -82698387 + MIR SINE MIR 90 192 -70 190 302 19 0 chr3 135339338 135339391 -82697767 - L2 LINE L2 -1 3271 3218 215 357 29 43 chr3 135339975 135340115 -82697043 + L2 LINE L2 2602 2739 -575 305 273 34 34 chr3 135340318 135340406 -82696752 + L1ME2 LINE L1 5808 5895 -269 2122 119 14 0 chr3 135340770 135341063 -82696095 - AluSx SINE Alu -15 297 1 201 298 48 36 chr3 135341212 135341296 -82695862 - MIR SINE MIR -97 165 81 714 295 64 43 chr3 135343215 135344126 -82693032 + L1MC4a LINE L1 574 952 -1555 2638 55 0 3 chr3 135344250 135344560 -82692598 + AluY SINE Alu 1 309 -2 6169 18 0 0 chr3 135344818 135345542 -82691616 + L1HS LINE L1 5432 6155 0 303 130 0 0 chr3 135345544 135345598 -82691560 + (A)n Simple_repeat Simple_repeat 1 54 0 2190 128 0 0 chr3 135345610 135345907 -82691251 + AluSq SINE Alu 1 297 -16 279 79 0 0 chr3 135345921 135345959 -82691199 + (TC)n Simple_repeat Simple_repeat 1 38 0 1312 208 89 20 chr3 135345960 135346307 -82690851 + MLT1F LTR MaLR 171 541 -1 2306 124 0 0 chr3 135346515 135346821 -82690337 + AluSq SINE Alu 1 306 -7 5508 161 56 28 chr3 135346830 135347427 -82689731 + L1MC2 LINE L1 4696 5275 -1069 2247 113 0 3 chr3 135347427 135347727 -82689431 + AluSx SINE Alu 1 299 -13 5508 161 56 28 chr3 135347727 135347740 -82689418 + L1MC2 LINE L1 5275 5286 -1058 192 40 0 0 chr3 135347740 135347765 -82689393 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5508 161 56 28 chr3 135347765 135348756 -82688402 + L1MC2 LINE L1 5286 6344 0 354 277 128 20 chr3 135348779 135348927 -82688231 - L1ME4a LINE L1 -65 6056 5893 1025 99 15 0 chr3 135349858 135349989 -82687169 - AluSq/x SINE Alu -180 133 1 7670 24 2 1 chr3 135350021 135351106 -82686052 + L1PA4 LINE L1 5069 6155 0 849 175 70 152 chr3 135352040 135352468 -82684690 + LTR37B LTR ERV1 10 402 -66 328 209 0 0 chr3 135352523 135352590 -82684568 + LTR37A LTR ERV1 346 412 -14 339 65 0 0 chr3 135353323 135353369 -82683789 + (GA)n Simple_repeat Simple_repeat 1 46 0 509 254 243 0 chr3 135353846 135354027 -82683131 + MIR SINE MIR 9 233 -29 608 202 0 8 chr3 135354041 135354160 -82682998 + AluJb SINE Alu 13 130 -182 1657 185 3 16 chr3 135354168 135354471 -82682687 + AluJo SINE Alu 2 300 -12 2293 104 0 3 chr3 135354633 135354930 -82682228 - AluSg SINE Alu -14 296 1 2279 104 7 0 chr3 135356076 135356395 -82680763 - AluSx SINE Alu 0 312 1 1090 196 32 18 chr3 135356457 135356677 -82680481 + MER58A DNA MER1_type 2 224 0 884 265 75 6 chr3 135356814 135357161 -82679997 + L1M4 LINE L1 3035 3405 -2741 2498 71 7 7 chr3 135357163 135357473 -82679685 + AluYb8 SINE Alu 1 310 -8 568 278 143 5 chr3 135357555 135357778 -82679380 + MIR SINE MIR 9 262 0 185 271 136 40 chr3 135358895 135359072 -82678086 - L2 LINE L2 -575 2739 2546 410 273 131 26 chr3 135359116 135359383 -82677775 + HAL1 LINE L1 2 296 -2211 743 329 25 39 chr3 135359532 135359894 -82677264 + HAL1 LINE L1 472 828 -1679 975 185 0 0 chr3 135359914 135360065 -82677093 - AluJb SINE Alu -30 282 132 1595 201 3 3 chr3 135360074 135360363 -82676795 - AluJo SINE Alu -22 290 2 365 202 63 178 chr3 135360364 135360537 -82676621 + HAL1 LINE L1 812 1003 -1504 1886 172 0 10 chr3 135360537 135360840 -82676318 - AluJo SINE Alu -12 300 1 365 202 63 178 chr3 135360840 135361010 -82676148 + HAL1 LINE L1 1003 1073 -1434 648 269 129 65 chr3 135361010 135361490 -82675668 + MLT1J LTR MaLR 1 511 0 365 202 63 178 chr3 135361490 135361685 -82675473 + HAL1 LINE L1 1073 1289 -1218 1250 279 56 53 chr3 135361754 135362177 -82674981 + HAL1 LINE L1 1815 2242 -265 1976 95 0 0 chr3 135362177 135362420 -82674738 + AluSq SINE Alu 1 243 -70 1250 279 56 53 chr3 135362420 135362687 -82674471 + HAL1 LINE L1 2242 2507 0 22 0 0 0 chr3 135362687 135362709 -82674449 + AT_rich Low_complexity Low_complexity 1 22 0 784 145 0 0 chr3 135362782 135362906 -82674252 - AluSg/x SINE Alu -2 310 187 1150 80 0 9 chr3 135362906 135363080 -82674078 - AluSq SINE Alu -86 227 1 236 259 222 0 chr3 135364675 135364783 -82672375 + MIR SINE MIR 125 256 -6 1941 168 0 0 chr3 135364794 135365098 -82672060 - AluJo SINE Alu -8 304 1 1277 246 123 9 chr3 135365422 135365852 -82671306 + L2 LINE L2 1881 2359 -955 593 204 172 0 chr3 135366973 135367130 -82670028 - MER5A DNA MER1_type 0 189 6 253 359 82 16 chr3 135367405 135367650 -82669508 + L2 LINE L2 2963 3223 -49 463 178 10 30 chr3 135369245 135369346 -82667812 - MER5B DNA MER1_type -75 103 5 2293 104 0 3 chr3 135370497 135370794 -82666364 + AluSg SINE Alu 1 296 -14 1942 158 0 13 chr3 135370956 135371259 -82665899 - AluJo SINE Alu -12 300 2 958 122 0 8 chr3 135371267 135371398 -82665760 - AluJb SINE Alu -182 130 1 439 305 87 31 chr3 135371462 135371665 -82665493 - L1 LINE L1 -2877 3269 3036 2980 9 0 0 chr3 135371665 135371983 -82665175 - AluYb8 SINE Alu 0 318 1 439 305 87 31 chr3 135371983 135372136 -82665022 - L1 LINE L1 -3110 3036 2893 21 0 0 0 chr3 135372610 135372631 -82664527 + AT_rich Low_complexity Low_complexity 1 21 0 1696 138 8 0 chr3 135372633 135372873 -82664285 - AluSx SINE Alu -51 261 20 509 254 243 0 chr3 135372894 135373075 -82664083 - MIR SINE MIR -29 233 9 213 94 0 0 chr3 135373552 135373584 -82663574 + (TC)n Simple_repeat Simple_repeat 1 32 0 328 209 0 0 chr3 135374317 135374384 -82662774 - LTR37A LTR ERV1 -14 412 346 849 175 70 152 chr3 135374439 135374867 -82662291 - LTR37B LTR ERV1 -66 402 10 1254 85 6 6 chr3 135375801 135375977 -82661181 - L1PA5 LINE L1 0 6154 5979 760 280 81 54 chr3 135376851 135377829 -82659329 + L1MC4a LINE L1 500 952 -1555 2602 61 0 3 chr3 135377953 135378263 -82658895 + AluY SINE Alu 1 309 -2 248 288 0 0 chr3 135378482 135378542 -82658616 + MLT1F LTR MaLR 5 67 -500 2261 117 0 0 chr3 135378542 135378842 -82658316 + AluSq SINE Alu 1 300 -13 248 288 0 0 chr3 135378842 135378854 -82658304 + MLT1F LTR MaLR 66 77 -490 270 81 0 0 chr3 135378857 135378894 -82658264 + (TC)n Simple_repeat Simple_repeat 1 37 0 1417 208 89 20 chr3 135378895 135379242 -82657916 + MLT1F LTR MaLR 171 541 -1 2250 128 0 0 chr3 135379450 135379756 -82657402 + AluSq SINE Alu 1 306 -7 5848 161 55 29 chr3 135379765 135380360 -82656798 + L1MC2 LINE L1 4696 5274 -1070 2169 115 3 3 chr3 135380360 135380656 -82656502 + AluSx SINE Alu 1 296 -16 5848 161 55 29 chr3 135380656 135380672 -82656486 + L1MC2 LINE L1 5274 5288 -1056 192 40 0 0 chr3 135380672 135380697 -82656461 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5848 161 55 29 chr3 135380697 135381688 -82655470 + L1MC2 LINE L1 5288 6344 0 240 289 133 15 chr3 135381711 135381846 -82655312 - L1ME4a LINE L1 -65 6056 5906 1016 99 15 0 chr3 135382781 135382912 -82654246 - AluSq/x SINE Alu -180 133 1 6511 21 2 0 chr3 135382944 135383873 -82653285 + L1PA4 LINE L1 5069 5999 -156 1583 199 29 0 chr3 135383974 135384316 -82652842 + L1M4 LINE L1 3440 3791 -2355 25 0 0 0 chr3 135384703 135384728 -82652430 + AT_rich Low_complexity Low_complexity 1 25 0 531 296 75 69 chr3 135386290 135386556 -82650602 + L2 LINE L2 2908 3178 -94 2434 134 56 19 chr3 135386556 135386966 -82650192 + MSTB LTR MaLR 1 425 -1 531 296 75 69 chr3 135386966 135387061 -82650097 + L2 LINE L2 3178 3271 -1 2028 143 72 3 chr3 135387539 135387914 -82649244 + MLT2C2 LTR ERVL 1 395 -2 258 265 71 0 chr3 135387923 135388021 -82649137 + L2 LINE L2 2957 3061 -211 201 195 0 0 chr3 135389217 135389258 -82647900 + (CA)n Simple_repeat Simple_repeat 2 42 0 521 152 97 121 chr3 135389323 135389488 -82647670 + MLT1J2 LTR MaLR 1 161 -289 403 273 87 16 chr3 135389535 135389718 -82647440 + LTR33A LTR ERVL 328 523 0 2188 119 0 3 chr3 135391639 135391934 -82645224 + AluSx SINE Alu 1 294 -18 3244 205 46 57 chr3 135394644 135395199 -82641959 + L1MC4a LINE L1 6102 6645 -1163 1884 172 3 0 chr3 135395199 135395495 -82641663 + AluJo SINE Alu 1 297 -15 3244 205 46 57 chr3 135395495 135395847 -82641311 + L1MC4a LINE L1 6645 6999 -809 2069 147 0 0 chr3 135395851 135396144 -82641014 - AluJb SINE Alu -19 293 1 3298 191 15 118 chr3 135396288 135396904 -82640254 + L1MC4 LINE L1 7089 7767 -275 2209 108 3 0 chr3 135396904 135397199 -82639959 + AluSq SINE Alu 1 296 -17 3298 191 15 118 chr3 135397199 135397333 -82639825 + L1MC4 LINE L1 7767 7702 -340 2476 67 0 3 chr3 135397333 135397630 -82639528 - AluY SINE Alu -15 296 1 3298 191 15 118 chr3 135397630 135397939 -82639219 + L1MC4 LINE L1 7701 8040 -2 424 134 0 0 chr3 135397945 135398012 -82639146 + L1MB3 LINE L1 6079 6145 -38 1924 148 7 20 chr3 135398012 135398317 -82638841 + AluJo SINE Alu 1 301 -11 425 249 77 63 chr3 135398332 135398714 -82638444 + HAL1b LINE L1 723 2502 -5 1851 160 10 3 chr3 135398719 135399026 -82638132 + AluJb SINE Alu 1 309 -3 1923 151 3 20 chr3 135399669 135399974 -82637184 + AluJo SINE Alu 1 300 -12 1151 171 133 0 chr3 135400045 135400255 -82636903 + AluJb SINE Alu 1 238 -74 2032 113 3 26 chr3 135400453 135400762 -82636396 - AluSx SINE Alu -10 302 1 23 0 0 0 chr3 135401183 135401206 -82635952 + AT_rich Low_complexity Low_complexity 1 23 0 6713 139 10 13 chr3 135401244 135401357 -82635801 + L1MA4 LINE L1 4427 4539 -1761 2485 88 0 0 chr3 135401357 135401664 -82635494 + AluSq SINE Alu 1 307 -6 6713 139 10 13 chr3 135401664 135403429 -82633729 + L1MA4 LINE L1 4539 6294 -6 1405 232 64 9 chr3 135403431 135403872 -82633286 + MER74B LTR ERVL 102 566 -56 582 221 31 12 chr3 135404249 135404412 -82632746 + MER69A DNA AcHobo 1 166 -11 212 132 26 0 chr3 135404474 135404512 -82632646 + MIR SINE MIR 113 151 -57 212 295 76 6 chr3 135404840 135405038 -82632120 + MIR3 SINE MIR 32 203 -5 2547 129 37 2 chr3 135405171 135405581 -82631577 - MSTA LTR MaLR 0 428 5 193 266 46 83 chr3 135406005 135406114 -82631044 + L2 LINE L2 3204 3308 -5 356 297 40 59 chr3 135406441 135406663 -82630495 - MIR SINE MIR -14 248 31 577 280 69 11 chr3 135407028 135407217 -82629941 - MIR SINE MIR -19 243 44 405 0 0 0 chr3 135407299 135407344 -82629814 + (CA)n Simple_repeat Simple_repeat 2 46 0 306 0 0 0 chr3 135407343 135407377 -82629781 + (GA)n Simple_repeat Simple_repeat 2 35 0 * 332 261 138 8 chr3 135407851 135407981 -82629177 + MIR SINE MIR 115 261 -1 421 343 49 35 chr3 135408110 135408463 -82628695 - L2 LINE L2 -12 3260 2654 202 182 0 0 chr3 135410644 135410677 -82626481 + G-rich Low_complexity Low_complexity 2 34 0 306 288 112 91 chr3 135410880 135411397 -82625761 + L1M2 LINE L1 679 1206 -5643 1623 163 42 6 chr3 135412229 135412561 -82624597 - L1MB4 LINE L1 -19 6161 5818 1643 172 71 15 chr3 135412693 135412864 -82624294 + MER2 DNA MER2_type 1 161 -183 1575 165 0 98 chr3 135412864 135413215 -82623943 + AluJb SINE Alu 1 320 0 1643 172 71 15 chr3 135413215 135413368 -82623790 + MER2 DNA MER2_type 161 344 0 207 0 0 0 chr3 135413817 135413840 -82623318 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2009 128 38 0 chr3 135413865 135414154 -82623004 + AluSx SINE Alu 1 300 -12 371 205 91 85 chr3 135414230 135414369 -82622789 + L1ME4a LINE L1 5691 5828 -293 1793 115 0 135 chr3 135414369 135414468 -82622690 + AluSx SINE Alu 1 112 -190 2379 92 3 0 chr3 135414468 135414773 -82622385 - AluSg SINE Alu -4 306 1 1793 115 0 135 chr3 135414773 135414818 -82622340 + AluSx SINE Alu 112 161 -141 2004 105 4 0 chr3 135414818 135415084 -82622074 - AluSx SINE Alu -2 310 44 1793 115 0 135 chr3 135415084 135415285 -82621873 + AluSx SINE Alu 161 300 -2 371 205 91 85 chr3 135415285 135415399 -82621759 + L1ME4a LINE L1 5828 5940 -181 423 0 0 0 chr3 135415399 135415446 -82621712 + (CA)n Simple_repeat Simple_repeat 2 48 0 371 205 91 85 chr3 135415446 135415472 -82621686 + L1ME4a LINE L1 5940 5964 -157 2491 86 0 6 chr3 135415472 135415787 -82621371 + AluSp SINE Alu 1 313 0 371 205 91 85 chr3 135415787 135415841 -82621317 + L1ME4a LINE L1 5964 6027 -94 486 143 198 0 chr3 135415899 135415990 -82621168 - FLAM_C SINE Alu -24 119 11 849 133 8 0 chr3 135416003 135416123 -82621035 - AluSx SINE Alu -142 170 50 303 125 0 0 chr3 135416216 135416264 -82620894 + AluJo SINE Alu 1 48 -251 665 148 32 116 chr3 135416535 135416724 -82620434 - MER5B DNA MER1_type -2 176 4 269 329 39 65 chr3 135417682 135417837 -82619321 + MIR SINE MIR 35 185 -77 228 343 116 33 chr3 135418536 135418717 -82618441 - L2 LINE L2 -626 2688 2493 263 294 0 12 chr3 135419533 135419618 -82617540 + GA-rich Low_complexity Low_complexity 4 87 0 1034 158 35 25 chr3 135419869 135420072 -82617086 - AluJo SINE Alu -23 289 85 601 263 18 18 chr3 135420347 135420539 -82616619 - MLT1G1 LTR MaLR -390 205 47 1583 174 35 14 chr3 135420713 135420814 -82616344 + AluJo SINE Alu 1 98 -214 183 42 0 0 chr3 135420814 135420838 -82616320 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1583 174 35 14 chr3 135420838 135421023 -82616135 + AluJo SINE Alu 98 293 -19 374 322 37 26 chr3 135421043 135421230 -82615928 - MIR SINE MIR -30 232 41 1343 188 0 4 chr3 135421398 135421638 -82615520 + AluJo SINE Alu 44 282 -30 21 36 0 0 chr3 135428312 135428340 -82608818 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr3 135431819 135431863 -82605295 + AT_rich Low_complexity Low_complexity 1 44 0 357 151 0 0 chr3 135432646 135432699 -82604459 - tRNA-Arg-CGC tRNA tRNA -23 53 1 3805 37 4 0 chr3 135433337 135433794 -82603364 + L1PA5 LINE L1 5696 6154 0 678 157 37 30 chr3 135433913 135434047 -82603111 - AluJo SINE Alu -177 135 1 260 225 28 28 chr3 135434569 135434640 -82602518 - MIR3 SINE MIR -48 160 90 1771 179 3 3 chr3 135434983 135435273 -82601885 + AluJb SINE Alu 1 290 -22 2012 195 80 39 chr3 135435398 135436029 -82601129 + L1MB7 LINE L1 4518 5204 -942 2246 119 0 0 chr3 135436029 135436323 -82600835 + AluSx SINE Alu 1 294 -18 2196 185 37 4 chr3 135436370 135436902 -82600256 + L1MB4 LINE L1 5565 6150 -24 2190 165 65 38 chr3 135436907 135437535 -82599623 + L1MB7 LINE L1 5188 5830 -348 1258 169 16 16 chr3 135437546 135437800 -82599358 + L1MB7 LINE L1 5930 6183 -1 692 171 0 0 chr3 135437895 135438006 -82599152 + AluSq/x SINE Alu 1 111 -202 1668 183 6 13 chr3 135438167 135438478 -82598680 + AluJb SINE Alu 3 311 -1 732 169 48 0 chr3 135438990 135439114 -82598044 - FLAM_A SINE Alu 0 142 13 673 284 165 33 chr3 135439144 135439743 -82597415 - L1MC4a LINE L1 -1839 5969 5292 2013 113 9 41 chr3 135440022 135440340 -82596818 + AluSx SINE Alu 1 308 -4 285 265 101 58 chr3 135440385 135440713 -82596445 - L1MC4a LINE L1 -1175 4971 4630 1737 160 13 37 chr3 135441209 135441509 -82595649 - AluJo SINE Alu -19 293 1 753 320 155 44 chr3 135442063 135442178 -82594980 + L2 LINE L2 1819 1920 -1394 2230 116 0 0 chr3 135442178 135442481 -82594677 - AluSq SINE Alu -10 303 1 753 320 155 44 chr3 135442481 135442853 -82594305 + L2 LINE L2 1920 2249 -1065 1941 158 41 6 chr3 135442853 135443215 -82593943 + THE1C LTR MaLR 1 375 0 753 320 155 44 chr3 135443215 135443727 -82593431 + L2 LINE L2 2249 2930 -384 594 293 55 32 chr3 135444062 135444315 -82592843 + MIR SINE MIR 2 260 -2 2092 112 3 10 chr3 135445128 135445422 -82591736 - AluSx SINE Alu -20 292 1 267 182 0 0 chr3 135445942 135445997 -82591161 - L1ME3A LINE L1 -195 5975 5921 5132 164 42 19 chr3 135446673 135447991 -82589167 + L1MA9 LINE L1 4954 6307 -5 279 156 94 42 chr3 135448600 135448696 -82588462 - L1MC5 LINE L1 -54 7907 7807 619 268 22 30 chr3 135448741 135448972 -82588186 - L1ME3A LINE L1 -5 6165 5937 1617 268 135 25 chr3 135449055 135449857 -82587301 - L1ME3 LINE L1 -9 6571 5682 894 286 132 47 chr3 135449861 135450183 -82586975 - L1ME3 LINE L1 -938 5626 5333 2137 97 37 10 chr3 135450183 135450481 -82586677 + AluSc SINE Alu 2 307 -2 894 286 132 47 chr3 135450481 135451720 -82585438 - L1ME3 LINE L1 -1231 5333 3938 722 265 115 34 chr3 135451952 135452885 -82584273 - L1ME3 LINE L1 -3394 3170 2200 2483 93 0 0 chr3 135452920 135453230 -82583928 - AluSx SINE Alu -2 310 1 446 296 68 52 chr3 135453246 135453710 -82583448 - L1ME3 LINE L1 -4634 2111 1636 2013 99 38 17 chr3 135453777 135454070 -82583088 + AluY SINE Alu 1 299 -12 2104 113 5 0 chr3 135454079 135454387 -82582771 + AluSx SINE Alu 1 285 -27 445 156 200 0 chr3 135454387 135454477 -82582681 + MER105 DNA DNA 31 138 -66 227 299 30 18 chr3 135454496 135454663 -82582495 - L1ME3 LINE L1 -5056 1498 1330 339 376 38 10 chr3 135454666 135454946 -82582212 - L1ME3 LINE L1 -4877 1331 946 2274 70 6 29 chr3 135454954 135455266 -82581892 + AluSx SINE Alu 1 305 -7 24 0 0 0 chr3 135455402 135455426 -82581732 + AT_rich Low_complexity Low_complexity 1 24 0 2469 56 7 10 chr3 135455825 135456130 -82581028 + AluY SINE Alu 1 304 -7 602 203 0 25 chr3 135456132 135456250 -82580908 - FLAM_A SINE Alu -18 115 1 22 70 0 0 chr3 135456494 135456537 -82580621 + AT_rich Low_complexity Low_complexity 1 43 0 981 225 136 29 chr3 135456762 135457149 -82580009 + L1ME1 LINE L1 5175 5604 -562 1178 121 5 60 chr3 135457149 135457364 -82579794 - Tigger1 DNA MER2_type 0 2418 2216 443 187 0 0 chr3 135457365 135457440 -82579718 + AluS SINE Alu 3 77 -235 3774 144 28 7 chr3 135457441 135458051 -82579107 - Tigger1 DNA MER2_type -1795 623 1 1491 211 48 2 chr3 135458057 135458447 -82578711 + L1ME1 LINE L1 5609 6157 -9 307 209 267 0 chr3 135458653 135458758 -82578400 - L2 LINE L2 -1880 1434 1302 732 195 95 18 chr3 135458764 135458933 -82578225 - MER58A DNA MER1_type -8 216 35 953 336 147 9 chr3 135458957 135459486 -82577672 - L2 LINE L2 -2003 1311 710 5496 189 75 18 chr3 135459495 135460755 -82576403 - Cheshire DNA MER1_type 0 2420 1089 264 182 0 0 chr3 135460776 135460831 -82576327 - L1MB8 LINE L1 -16 6162 6108 442 232 131 0 chr3 135460831 135460930 -82576228 - Cheshire DNA MER1_type -1329 1091 980 2216 117 0 0 chr3 135460952 135461250 -82575908 + AluSx SINE Alu 1 298 -14 337 280 0 0 chr3 135461250 135461325 -82575833 + MER21B LTR ERV1 16 90 -773 456 158 26 0 chr3 135461347 135461423 -82575735 + MER21B LTR ERV1 19 96 -767 2803 213 87 36 chr3 135461425 135462152 -82575006 + MER21B LTR ERV1 40 803 -60 654 99 0 0 chr3 135462173 135462264 -82574894 - Cheshire DNA MER1_type -1437 983 893 10712 201 32 65 chr3 135463569 135466380 -82570778 + L1 LINE L1 2299 5125 -1021 747 203 0 0 chr3 135466380 135466508 -82570650 + AluJo SINE Alu 1 128 -184 10712 201 32 65 chr3 135466508 135466766 -82570392 + L1 LINE L1 5125 5390 -756 1627 180 0 43 chr3 135466766 135467071 -82570087 + AluJb SINE Alu 1 292 -20 4194 157 8 7 chr3 135467073 135467811 -82569347 + L1PA16 LINE L1 5428 6166 0 836 147 0 0 chr3 135467906 135468035 -82569123 + AluJo SINE Alu 2 130 -172 1016 158 0 6 chr3 135468406 135468570 -82568588 + AluJo SINE Alu 134 296 -16 23 105 0 0 chr3 135468655 135468741 -82568417 + AT_rich Low_complexity Low_complexity 1 86 0 537 295 179 0 chr3 135469211 135469418 -82567740 + MIR SINE MIR 6 249 -13 22 80 0 0 chr3 135470274 135470324 -82566834 + AT_rich Low_complexity Low_complexity 1 50 0 2031 93 54 0 chr3 135471180 135471459 -82565699 - AluSg SINE Alu -16 294 1 647 304 67 29 chr3 135473124 135473364 -82563794 + MIR SINE MIR 4 252 -10 225 220 140 30 chr3 135473425 135473525 -82563633 - MER112 DNA MER1_type -63 197 87 299 263 188 30 chr3 135473688 135473821 -82563337 + L2 LINE L2 3160 3313 0 2330 63 3 7 chr3 135474089 135474415 -82562743 - AluSp SINE Alu 0 325 1 220 341 163 11 chr3 135475949 135476318 -82560840 + L2 LINE L2 1620 2044 -1270 23 54 0 0 chr3 135476968 135477005 -82560153 + AT_rich Low_complexity Low_complexity 1 37 0 494 264 29 45 chr3 135477277 135477519 -82559639 + L1MC4a LINE L1 5722 5959 -1849 1874 146 10 3 chr3 135478081 135478376 -82558782 + AluJb SINE Alu 1 297 -15 205 397 0 0 chr3 135479622 135479685 -82557473 + L2 LINE L2 3229 3291 -22 289 242 30 15 chr3 135481654 135481720 -82555438 + L2 LINE L2 3205 3271 -1 22 0 0 0 chr3 135483229 135483251 -82553907 + AT_rich Low_complexity Low_complexity 1 22 0 773 162 0 0 chr3 135483258 135483375 -82553783 - AluJb SINE Alu -195 117 1 317 229 93 34 chr3 135484094 135484212 -82552946 + L1ME4a LINE L1 5499 5623 -498 370 251 163 69 chr3 135484216 135484566 -82552592 + L1ME4a LINE L1 5671 6053 -68 434 260 192 28 chr3 135484606 135484783 -82552375 + MER63A DNA MER1_type 2 207 -3 1663 158 4 0 chr3 135485038 135485297 -82551861 + AluJo SINE Alu 1 260 -52 524 212 80 0 chr3 135485319 135485432 -82551726 - L2 LINE L2 0 3313 3192 185 0 0 39 chr3 135487713 135487739 -82549419 + (CCA)n Simple_repeat Simple_repeat 3 27 0 181 353 0 0 chr3 135488328 135488379 -82548779 - L2 LINE L2 -15 3257 3207 1720 216 62 25 chr3 135490434 135490915 -82546243 + Charlie1b DNA MER1_type 24 522 -1 4196 222 66 13 chr3 135491038 135492187 -82544971 + L1MC4a LINE L1 6599 7808 0 198 356 44 33 chr3 135492278 135492368 -82544790 - L2 LINE L2 -13 3300 3210 333 343 90 0 chr3 135492381 135492547 -82544611 - MIR SINE MIR -72 190 10 228 330 146 10 chr3 135492567 135492670 -82544488 - MIR SINE MIR -62 146 30 2164 114 3 0 chr3 135492855 135493154 -82544004 + AluSg SINE Alu 1 300 -10 236 308 98 21 chr3 135493313 135493456 -82543702 + MIR SINE MIR 75 228 -34 232 263 175 9 chr3 135493496 135493610 -82543548 + MIR SINE MIR 128 260 -2 2155 123 3 7 chr3 135493803 135494104 -82543054 - AluSx SINE Alu -12 300 1 324 192 132 143 chr3 135494337 135494405 -82542753 - L1MDb LINE L1 -5112 1297 1230 1785 163 3 3 chr3 135494405 135494687 -82542471 - AluJb SINE Alu -30 282 1 324 192 132 143 chr3 135494687 135494800 -82542358 - L1MDb LINE L1 -5179 1230 1118 1413 199 8 15 chr3 135494802 135495063 -82542095 - AluJb SINE Alu -53 259 1 24 0 0 0 chr3 135495067 135495091 -82542067 + AT_rich Low_complexity Low_complexity 1 24 0 409 147 42 11 chr3 135495120 135495215 -82541943 - L1MDb LINE L1 -5239 1170 1073 590 103 0 0 chr3 135495315 135495402 -82541756 - AluY SINE Alu -231 87 1 331 268 73 16 chr3 135496121 135496244 -82540914 - MIR SINE MIR -81 181 52 1715 153 27 33 chr3 135496247 135496547 -82540611 + AluJo SINE Alu 1 298 -14 1224 138 0 0 chr3 135496936 135497110 -82540048 + AluSg/x SINE Alu 132 305 -7 649 182 0 16 chr3 135497484 135497605 -82539553 - FLAM_C SINE Alu -14 119 1 977 93 117 0 chr3 135498071 135498233 -82538925 + L1MA2 LINE L1 6124 6304 0 351 24 0 0 chr3 135498284 135498326 -82538832 - 5S rRNA rRNA -79 42 1 1495 233 107 61 chr3 135498389 135499132 -82538026 + L1MDb LINE L1 9 947 -5462 2774 10 0 7 chr3 135499132 135499441 -82537717 + AluYa5 SINE Alu 1 307 -4 1984 153 0 3 chr3 135499743 135500051 -82537107 + AluJb SINE Alu 1 307 -5 855 146 7 15 chr3 135500106 135500243 -82536915 + AluJo SINE Alu 1 136 -176 24 0 0 0 chr3 135500544 135500568 -82536590 + AT_rich Low_complexity Low_complexity 1 24 0 1110 240 91 39 chr3 135502023 135502406 -82534752 + MER57A LTR ERV1 1 403 0 269 179 0 0 chr3 135503335 135503374 -82533784 - Tigger5 DNA MER2_type 0 2323 2285 261 239 14 14 chr3 135503396 135503467 -82533691 - Tigger5 DNA MER2_type -2246 77 7 593 253 57 0 chr3 135504129 135504287 -82532871 - MIR SINE MIR -34 228 62 1026 306 69 18 chr3 135504368 135504819 -82532339 + L2 LINE L2 2818 3291 -22 204 300 100 0 chr3 135504825 135504895 -82532263 - MIR SINE MIR -183 79 3 202 276 81 35 chr3 135504913 135505000 -82532158 - MIR SINE MIR -124 138 48 1759 148 0 14 chr3 135506237 135506528 -82530630 - AluSc SINE Alu -12 297 11 239 244 78 121 chr3 135506653 135507001 -82530157 + L1ME4a LINE L1 5744 6076 -45 26 30 0 0 chr3 135507044 135507077 -82530081 + AT_rich Low_complexity Low_complexity 1 33 0 1147 252 128 18 chr3 135507192 135507905 -82529253 + L1ME3A LINE L1 4967 5771 -399 838 215 142 58 chr3 135507924 135508235 -82528923 + L1ME3A LINE L1 5827 6163 -7 249 33 0 0 chr3 135508265 135508295 -82528863 + (CA)n Simple_repeat Simple_repeat 1 30 0 245 257 114 34 chr3 135508337 135508512 -82528646 + L1ME1 LINE L1 5739 5927 -239 2495 65 0 10 chr3 135508541 135508848 -82528310 - AluY SINE Alu -7 304 1 727 220 0 0 chr3 135509306 135509438 -82527720 + AluJo SINE Alu 3 134 -178 2040 138 0 0 chr3 135509888 135510193 -82526965 - AluSx SINE Alu -7 305 1 734 178 32 6 chr3 135510935 135511097 -82526061 + MER3 DNA MER1_type 2 123 -86 476 141 212 20 chr3 135511151 135511250 -82525908 + FLAM_C SINE Alu 1 118 -15 22 0 0 0 chr3 135511250 135511272 -82525886 + AT_rich Low_complexity Low_complexity 1 22 0 2152 116 0 3 chr3 135511703 135512006 -82525152 + AluSx SINE Alu 1 302 -10 1699 192 0 3 chr3 135512016 135512329 -82524829 + AluJo SINE Alu 1 312 0 309 221 153 23 chr3 135512566 135512697 -82524461 + L1ME4a LINE L1 5772 5919 -202 2072 199 41 19 chr3 135512781 135513244 -82523914 + L1MD2 LINE L1 5640 6112 -247 3370 142 0 15 chr3 135513247 135513782 -82523376 + MER1A DNA MER1_type 1 527 0 480 275 14 7 chr3 135513813 135513955 -82523203 + L1MD2 LINE L1 6201 6343 -16 1200 270 82 21 chr3 135514467 135514977 -82522181 + L1MC4 LINE L1 6440 7076 -817 665 267 137 25 chr3 135514988 135515303 -82521855 + L1MC4 LINE L1 7321 7670 -372 1905 242 126 25 chr3 135515327 135515407 -82521751 + L1ME2 LINE L1 2542 2612 -3534 1450 186 55 7 chr3 135515407 135515697 -82521461 + AluJo SINE Alu 1 304 -8 1905 242 126 25 chr3 135515697 135516495 -82520663 + L1ME2 LINE L1 2612 3509 -2637 1284 184 19 56 chr3 135516495 135516761 -82520397 + AluJb SINE Alu 44 299 -13 3760 216 69 50 chr3 135516763 135517185 -82519973 + L1ME2 LINE L1 3502 3914 -2232 2083 46 4 8 chr3 135517185 135517444 -82519714 - AluY SINE Alu -16 295 38 3760 216 69 50 chr3 135517444 135517531 -82519627 + L1ME2 LINE L1 3914 3998 -2148 1600 179 7 33 chr3 135517531 135517832 -82519326 - AluJb SINE Alu -19 293 1 3760 216 69 50 chr3 135517832 135518635 -82518523 + L1ME2 LINE L1 3998 4840 -1306 1326 261 88 13 chr3 135518643 135519121 -82518037 + L1ME2 LINE L1 5650 6163 -1 268 368 35 18 chr3 135519488 135519659 -82517499 - L2 LINE L2 -489 2825 2652 1986 210 35 32 chr3 135519695 135519951 -82517207 + L1ME LINE L1 2647 2901 -3245 2099 145 3 0 chr3 135519951 135520254 -82516904 - AluSx SINE Alu -6 306 3 1986 210 35 32 chr3 135520254 135520592 -82516566 + L1ME LINE L1 2901 3243 -2903 703 164 8 0 chr3 135520594 135520728 -82516430 + L1MB2 LINE L1 5990 6124 -47 2352 234 39 2 chr3 135521583 135522206 -82514952 + L1ME LINE L1 3242 3887 -2259 215 355 66 0 chr3 135522287 135522363 -82514795 - L2 LINE L2 -50 3222 3142 22 0 0 0 chr3 135523838 135523860 -82513298 + AT_rich Low_complexity Low_complexity 1 22 0 510 295 78 40 chr3 135523876 135524273 -82512885 + L1ME LINE L1 5298 5709 -412 1868 156 3 13 chr3 135524654 135524961 -82512197 + AluJb SINE Alu 2 305 -7 33 43 0 0 chr3 135525253 135525300 -82511858 + AT_rich Low_complexity Low_complexity 1 47 0 2188 101 0 7 chr3 135525304 135525602 -82511556 + AluSc SINE Alu 1 296 -13 6994 98 27 9 chr3 135525610 135526737 -82510421 - L1MA1 LINE L1 -11 6291 5144 887 242 80 47 chr3 135527188 135527527 -82509631 + L1MC4a LINE L1 5576 5925 -1883 192 152 0 0 chr3 135527558 135527591 -82509567 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 398 277 175 12 chr3 135529536 135529702 -82507456 - MIR SINE MIR -34 228 36 21 0 0 0 chr3 135531307 135531328 -82505830 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 135531685 135531706 -82505452 + AT_rich Low_complexity Low_complexity 1 21 0 1912 95 25 7 chr3 135531904 135532187 -82504971 - AluY SINE Alu -8 303 16 745 284 169 17 chr3 135532233 135532635 -82504523 + MLT1J LTR MaLR 1 463 -48 2424 72 3 0 chr3 135533555 135533860 -82503298 + AluY SINE Alu 1 306 -5 825 21 0 0 chr3 135533972 135534069 -82503089 + L1PA3 LINE L1 6057 6153 -2 324 301 115 44 chr3 135534370 135534553 -82502605 + L3b LINE CR1 1359 1554 -29 1797 247 80 48 chr3 135534872 135535345 -82501813 + L1M4b LINE L1 1297 1753 -5385 2032 121 3 30 chr3 135535345 135535650 -82501508 - AluSx SINE Alu -15 297 1 1797 247 80 48 chr3 135535650 135536451 -82500707 + L1M4b LINE L1 1753 2928 -4210 644 198 0 28 chr3 135536459 135536753 -82500405 + (TA)n Simple_repeat Simple_repeat 1 285 0 2145 230 79 7 chr3 135536765 135537415 -82499743 + L1M4b LINE L1 2908 3605 -3352 702 163 8 8 chr3 135537415 135537544 -82499614 + FLAM_C SINE Alu 1 129 -14 728 175 114 0 chr3 135537548 135537759 -82499399 + L1M4b LINE L1 3595 3829 -3128 26 50 0 0 chr3 135537935 135537975 -82499183 + AT_rich Low_complexity Low_complexity 1 40 0 520 152 9 25 chr3 135538278 135538400 -82498758 + L1MA4 LINE L1 6156 6277 -35 313 328 155 10 chr3 135538582 135538872 -82498286 + L1MC/D LINE L1 5319 5650 -2158 219 114 0 0 chr3 135538875 135538910 -82498248 + (TA)n Simple_repeat Simple_repeat 2 36 0 432 172 0 22 chr3 135539084 135539218 -82497940 + (TA)n Simple_repeat Simple_repeat 2 132 0 2130 108 14 0 chr3 135539237 135539534 -82497624 - AluSx SINE Alu -11 301 1 421 266 70 8 chr3 135539534 135539662 -82497496 + L1MC/D LINE L1 5652 5787 -2021 1993 116 6 31 chr3 135640130 135640449 -82396709 - AluSx SINE Alu -1 311 1 932 115 31 0 chr3 135640634 135640764 -82396394 - LTR12 LTR ERV1 -234 480 347 * 19771 114 6 13 chr3 135640756 135643583 -82393575 - HERV9 LTR ERV1 -5533 2866 58 742 136 0 0 chr3 135643604 135643707 -82393451 - LTR12 LTR ERV1 -131 583 481 329 273 10 0 chr3 135643708 135643807 -82393351 - LTR30 LTR ERV1 -79 643 544 1284 108 105 23 chr3 135643807 135644052 -82393106 - LTR12 LTR ERV1 -417 2021 53 273 211 0 0 chr3 135644052 135644104 -82393054 - LTR30 LTR ERV1 -670 52 1 774 181 0 0 chr3 135644138 135644254 -82392904 + AluJo/FLAM SINE Alu 1 116 -186 1968 115 23 30 chr3 135644254 135644559 -82392599 + AluSx SINE Alu 1 303 -9 369 235 0 12 chr3 135644661 135644742 -82392416 - MER103 DNA DNA -44 122 43 2239 102 3 3 chr3 135645686 135645999 -82391159 - AluSp SINE Alu 0 313 1 1577 177 22 19 chr3 135646299 135646610 -82390548 - AluJo SINE Alu 0 312 1 192 262 0 0 chr3 135646677 135646719 -82390439 - L2 LINE L2 -7 3306 3265 729 144 20 48 chr3 135647265 135647411 -82389747 - LTR7 LTR ERV1 -7 443 302 23 0 0 0 chr3 135647726 135647749 -82389409 + GC_rich Low_complexity Low_complexity 1 23 0 204 184 0 0 chr3 135647763 135647801 -82389357 + C-rich Low_complexity Low_complexity 1 38 0 857 145 0 118 chr3 135648056 135648277 -82388881 + AluSg/x SINE Alu 85 279 -31 345 47 0 0 chr3 135648280 135648323 -82388835 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1773 145 34 20 chr3 135649057 135649354 -82387804 - AluJb SINE Alu -11 301 1 445 230 170 24 chr3 135649458 135649623 -82387535 - MIR SINE MIR -7 255 67 1718 111 111 4 chr3 135649667 135649946 -82387212 + AluSg SINE Alu 1 309 -1 442 241 35 9 chr3 135649951 135650067 -82387091 - L2 LINE L2 -179 3134 3016 226 291 17 86 chr3 135650362 135650479 -82386679 - MIR SINE MIR 0 262 154 1349 193 49 69 chr3 135650484 135650831 -82386327 - MLT1A2 LTR MaLR -16 358 19 481 200 168 0 chr3 135650832 135650957 -82386201 - MIR SINE MIR -113 149 4 1464 169 8 0 chr3 135651327 135651581 -82385577 - AluJb SINE Alu -13 299 44 1582 85 5 0 chr3 135651581 135651792 -82385366 - AluSp SINE Alu -101 212 1 1311 157 23 54 chr3 135651794 135652055 -82385103 - LTR8 LTR ERV1 -438 253 1 534 296 36 5 chr3 135652061 135652257 -82384901 + L2 LINE L2 2490 2691 -623 1880 212 53 32 chr3 135652264 135652641 -82384517 - L1MB7 LINE L1 0 6184 5817 620 191 17 9 chr3 135652641 135652756 -82384402 - FLAM_A SINE Alu -17 116 1 2209 99 16 0 chr3 135652765 135653068 -82384090 - AluSx SINE Alu -4 308 1 1880 212 53 32 chr3 135653068 135653241 -82383917 - L1MB7 LINE L1 -374 5810 5612 2323 88 0 0 chr3 135653243 135653549 -82383609 - AluY SINE Alu -5 306 1 492 136 0 0 chr3 135653551 135653632 -82383526 - AluSp/q SINE Alu -5 308 228 2593 77 0 6 chr3 135653634 135653961 -82383197 - LTR2B LTR ERV1 -2 488 164 666 133 0 0 chr3 135654094 135654184 -82382974 - AluS SINE Alu -222 91 2 696 118 18 0 chr3 135654208 135654318 -82382840 - MLT1B LTR MaLR -229 161 50 1525 150 24 17 chr3 135654319 135654612 -82382546 + AluJo SINE Alu 1 295 -17 885 164 19 65 chr3 135654617 135654648 -82382510 + L1M4 LINE L1 5433 5464 -710 2958 112 123 2 chr3 135654648 135655104 -82382054 - MER9 LTR ERVK 0 511 1 885 164 19 65 chr3 135655104 135655137 -82382021 + L1M4 LINE L1 5464 5497 -677 2020 137 0 6 chr3 135655137 135655451 -82381707 + AluSx SINE Alu 1 312 0 885 164 19 65 chr3 135655451 135655599 -82381559 + L1M4 LINE L1 5497 5636 -538 * 2599 190 149 0 chr3 135655575 135656283 -82380875 + L1P LINE L1 4556 5379 -783 1366 171 5 0 chr3 135656288 135656505 -82380653 + AluSc SINE Alu 83 300 -9 994 155 204 16 chr3 135656505 135656750 -82380408 + LTR54B LTR ERV1 14 304 -194 1529 173 77 4 chr3 135656752 135657024 -82380134 - AluJo SINE Alu -13 299 8 431 247 31 31 chr3 135657095 135657444 -82379714 + ALR/Alpha Satellite centromeric 1 349 -81 517 243 35 42 chr3 135657475 135657673 -82379485 + ALR/Alpha Satellite centromeric 1 199 -1772 2080 125 10 6 chr3 135657673 135657984 -82379174 + AluSq SINE Alu 1 312 -1 517 243 35 42 chr3 135657984 135658128 -82379030 + ALR/Alpha Satellite centromeric 199 343 -1628 2004 133 14 14 chr3 135658128 135658421 -82378737 + AluSx SINE Alu 1 293 -19 517 243 35 42 chr3 135658421 135659426 -82377732 + ALR/Alpha Satellite centromeric 343 1937 -34 841 190 45 22 chr3 135659606 135659785 -82377373 + AluJb SINE Alu 129 311 -1 2972 193 16 12 chr3 135659788 135659828 -82377330 - L1MB4 LINE L1 -12 6168 6130 1622 176 30 23 chr3 135659828 135660129 -82377029 - AluJo SINE Alu -9 303 1 2972 193 16 12 chr3 135660129 135660329 -82376829 - L1MB4 LINE L1 -50 6130 5932 1092 166 156 122 chr3 135660329 135660764 -82376394 + LTR7 LTR ERV1 1 450 0 2972 193 16 12 chr3 135660764 135661096 -82376062 - L1MB4 LINE L1 -248 5932 5593 22 65 0 0 chr3 135661110 135661141 -82376017 + AT_rich Low_complexity Low_complexity 1 31 0 1192 186 89 1 chr3 135661148 135661409 -82375749 - L1PA16 LINE L1 -16 6150 5871 27 0 0 0 chr3 135661769 135661796 -82375362 + GC_rich Low_complexity Low_complexity 1 27 0 840 220 116 53 chr3 135662272 135662704 -82374454 - L1M4 LINE L1 -2629 3517 3059 865 242 25 5 chr3 135662708 135662906 -82374252 - MER58A DNA MER1_type -1 223 22 447 257 123 36 chr3 135662907 135663183 -82373975 - L1M4 LINE L1 -3085 3061 2762 22 42 0 0 chr3 135663249 135663273 -82373885 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr3 135663490 135663516 -82373642 + AT_rich Low_complexity Low_complexity 1 26 0 329 343 7 14 chr3 135663675 135663951 -82373207 + G-rich Low_complexity Low_complexity 1 274 0 214 203 8 42 chr3 135663968 135664086 -82373072 + GA-rich Low_complexity Low_complexity 4 117 0 205 309 0 12 chr3 135664096 135664180 -82372978 + G-rich Low_complexity Low_complexity 2 84 0 * 245 206 0 32 chr3 135664119 135664182 -82372976 + GA-rich Low_complexity Low_complexity 1 61 0 181 190 0 35 chr3 135664193 135664251 -82372907 + GA-rich Low_complexity Low_complexity 1 56 0 443 138 0 0 chr3 135664386 135664451 -82372707 - LTR7 LTR ERV1 -385 65 1 2039 81 0 4 chr3 135664549 135664808 -82372350 + AluSq SINE Alu 47 304 -9 746 117 0 29 chr3 135664810 135664913 -82372245 - AluS SINE Alu -211 101 2 2273 121 0 3 chr3 135665361 135665674 -82371484 - AluSx SINE Alu 0 312 1 2125 100 4 4 chr3 135665691 135665971 -82371187 - AluSg SINE Alu -18 292 13 2278 88 47 26 chr3 135666422 135666763 -82370395 + THE1A LTR MaLR 1 348 -7 29 0 0 0 chr3 135666806 135666835 -82370323 + AT_rich Low_complexity Low_complexity 1 29 0 612 84 8 160 chr3 135666842 135666899 -82370259 - HY3 scRNA scRNA 0 101 70 1617 191 24 0 chr3 135666899 135667187 -82369971 + AluJo SINE Alu 1 295 -17 612 84 8 160 chr3 135667187 135667248 -82369910 - HY3 scRNA scRNA -31 70 1 23 0 0 0 chr3 135668046 135668069 -82369089 + AT_rich Low_complexity Low_complexity 1 23 0 2307 98 10 3 chr3 135669568 135669875 -82367283 - AluSg SINE Alu -1 309 1 2457 79 3 0 chr3 135669885 135670188 -82366970 - AluSp SINE Alu -9 304 1 306 122 0 41 chr3 135670272 135670321 -82366837 - FLAM_A SINE Alu -10 123 77 22 35 0 0 chr3 135670808 135670837 -82366321 + AT_rich Low_complexity Low_complexity 1 29 0 805 243 34 25 chr3 135670918 135671157 -82366001 + L1MEc LINE L1 23 263 -6133 415 198 12 0 chr3 135671196 135671282 -82365876 + L1MB8 LINE L1 4864 4950 -1196 1420 189 95 25 chr3 135671286 135671730 -82365428 + L1MB8 LINE L1 5596 6103 -75 262 169 14 28 chr3 135671752 135671823 -82365335 + CT-rich Low_complexity Low_complexity 3 72 0 1660 117 97 0 chr3 135671844 135672091 -82365067 - AluSx SINE Alu -11 301 31 453 258 56 56 chr3 135672301 135672534 -82364624 + L1MEc LINE L1 2499 2731 -3484 845 171 0 0 chr3 135672536 135672659 -82364499 - AluJb SINE Alu -125 187 65 249 132 0 0 chr3 135672659 135672697 -82364461 + L1MEc LINE L1 2749 2786 -3429 2316 106 6 6 chr3 135672697 135673009 -82364149 + AluSx SINE Alu 1 312 0 1922 147 14 0 chr3 135673889 135674182 -82362976 + AluSx SINE Alu 1 297 -15 1544 138 154 8 chr3 135674307 135674567 -82362591 + AluJo SINE Alu 1 298 -4 248 246 15 0 chr3 135674568 135674633 -82362525 - L2 LINE L2 -19 3294 3229 439 273 8 16 chr3 135675096 135675217 -82361941 - L2 LINE L2 -9 3304 3185 450 194 58 19 chr3 135675290 135675393 -82361765 - MER5A DNA MER1_type -43 146 40 3429 106 9 0 chr3 135675469 135675913 -82361245 - MER83 LTR ERV1 0 448 1 1921 143 0 7 chr3 135675936 135676216 -82360942 + AluJo SINE Alu 1 278 -34 482 201 134 43 chr3 135677130 135677294 -82359864 - MIR SINE MIR 0 262 84 1854 151 4 0 chr3 135677412 135677690 -82359468 + AluSx SINE Alu 1 279 -33 271 22 87 0 chr3 135677692 135677738 -82359420 + A-rich Low_complexity Low_complexity 1 50 0 366 23 0 0 chr3 135677797 135677840 -82359318 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1503 212 10 7 chr3 135678102 135678399 -82358759 + AluJo SINE Alu 7 304 -8 1938 146 7 0 chr3 135678424 135678712 -82358446 - AluSx SINE Alu -22 290 1 556 143 10 31 chr3 135678750 135678848 -82358310 + MLT1A2 LTR MaLR 2 97 -277 1497 127 0 0 chr3 135678989 135679194 -82357964 - AluSx SINE Alu -106 206 2 1825 166 23 13 chr3 135679195 135679503 -82357655 - AluJb SINE Alu -1 311 1 2374 132 11 3 chr3 135679503 135679874 -82357284 - L1P4 LINE L1 -428 5738 5365 2206 135 0 0 chr3 135679874 135680186 -82356972 - AluSx SINE Alu 0 312 1 231 114 0 0 chr3 135681441 135681476 -82355682 + (TG)n Simple_repeat Simple_repeat 2 36 0 837 159 56 0 chr3 135681842 135681968 -82355190 + FLAM_C SINE Alu 1 133 0 985 153 38 0 chr3 135682008 135682165 -82354993 - AluSg/x SINE Alu -16 294 132 1670 135 8 0 chr3 135682165 135682409 -82354749 - AluSq SINE Alu -14 299 54 1788 133 54 17 chr3 135682451 135682745 -82354413 + AluSx SINE Alu 1 305 -7 2210 99 3 7 chr3 135683716 135684010 -82353148 - AluSq SINE Alu -20 293 1 21 36 0 0 chr3 135684620 135684648 -82352510 + AT_rich Low_complexity Low_complexity 1 28 0 2232 108 0 7 chr3 135684859 135685155 -82352003 - AluSq SINE Alu -19 294 1 1654 176 3 21 chr3 135685328 135685618 -82351540 - AluJo SINE Alu -27 285 1 255 274 27 27 chr3 135685765 135685838 -82351320 + MIR3 SINE MIR 85 157 -51 380 215 21 75 chr3 135685900 135685993 -82351165 + AluS SINE Alu 2 68 -235 1201 228 7 17 chr3 135686388 135686666 -82350492 + AluJb SINE Alu 5 281 -21 324 0 0 0 chr3 135686666 135686702 -82350456 + (CA)n Simple_repeat Simple_repeat 1 36 0 1201 228 7 17 chr3 135686702 135686721 -82350437 + AluJb SINE Alu 281 299 -3 247 163 47 0 chr3 135687162 135687205 -82349953 - Alu SINE Alu -237 65 21 1741 141 0 15 chr3 135687213 135687477 -82349681 + AluJo SINE Alu 42 302 -5 207 0 0 0 chr3 135687477 135687500 -82349658 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 367 253 176 17 chr3 135687507 135687782 -82349376 + L1ME4a LINE L1 5778 6105 -16 2152 99 3 37 chr3 135687782 135688104 -82349054 + AluSx SINE Alu 2 312 0 367 253 176 17 chr3 135688104 135688124 -82349034 + L1ME4a LINE L1 6105 6120 -1 436 175 58 19 chr3 135688299 135688402 -82348756 + MER50 LTR ERV1 492 598 -136 261 139 0 0 chr3 135688413 135688456 -82348702 + (TA)n Simple_repeat Simple_repeat 1 43 0 1723 184 20 0 chr3 135689130 135689424 -82347734 + AluJb SINE Alu 1 300 -12 412 199 19 41 chr3 135689815 135689934 -82347224 + L1ME LINE L1 5545 5662 -459 1774 261 179 36 chr3 135690110 135691187 -82345971 + HAL1 LINE L1 14 1252 -1255 207 0 0 0 chr3 135691187 135691210 -82345948 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1774 261 179 36 chr3 135691210 135691225 -82345933 + HAL1 LINE L1 1252 1263 -1244 1986 154 92 27 chr3 135691230 135691731 -82345427 + MLT2A2 LTR ERVL 1 554 0 1059 227 172 22 chr3 135691731 135691986 -82345172 + HAL1 LINE L1 1277 1492 -1015 2197 113 7 0 chr3 135691986 135692277 -82344881 - AluSx SINE Alu -19 293 1 1059 227 172 22 chr3 135692277 135692475 -82344683 + HAL1 LINE L1 1492 1798 -709 23 33 0 0 chr3 135693439 135693469 -82343689 + AT_rich Low_complexity Low_complexity 1 30 0 449 294 29 0 chr3 135693513 135693615 -82343543 + L2 LINE L2 3165 3269 -3 2190 130 13 0 chr3 135693664 135693972 -82343186 - AluSx SINE Alu 0 312 1 1972 147 16 3 chr3 135694082 135694388 -82342770 - AluSx SINE Alu -2 310 1 723 185 161 19 chr3 135695096 135695258 -82341900 - MER5A DNA MER1_type -1 188 4 1214 194 37 0 chr3 135695269 135695485 -82341673 + MER58A DNA MER1_type 1 224 0 1705 116 29 0 chr3 135695691 135695932 -82341226 - AluSx SINE Alu -20 292 45 582 167 33 0 chr3 135695939 135696029 -82341129 - AluSq/x SINE Alu -196 116 24 289 205 0 0 chr3 135696029 135696085 -82341073 - AluS SINE Alu -210 93 44 267 196 0 0 chr3 135696105 135696151 -82341007 + AluS SINE Alu 47 92 -211 1227 123 6 0 chr3 135696703 135696882 -82340276 + AluSp SINE Alu 32 211 -102 1602 125 20 16 chr3 135696882 135697130 -82340028 + AluSq SINE Alu 43 291 -22 28 29 0 0 chr3 135697130 135697165 -82339993 + AT_rich Low_complexity Low_complexity 1 35 0 1213 162 16 0 chr3 135697668 135697859 -82339299 - AluSx SINE Alu -118 194 1 2084 135 17 0 chr3 135697869 135698158 -82339000 - AluSx SINE Alu -18 294 1 224 333 120 18 chr3 135698208 135698433 -82338725 + L2 LINE L2 2334 2581 -733 493 242 159 16 chr3 135698666 135698848 -82338310 - MIR SINE MIR -19 243 36 2357 93 3 0 chr3 135699505 135699805 -82337353 + AluSp SINE Alu 1 301 -12 22 0 0 0 chr3 135699828 135699850 -82337308 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr3 135700294 135700325 -82336833 + AT_rich Low_complexity Low_complexity 1 31 0 2338 98 0 0 chr3 135701518 135701815 -82335343 - AluSx SINE Alu -15 297 1 1088 171 5 5 chr3 135701908 135702095 -82335063 + AluJb SINE Alu 87 273 -39 30 0 0 0 chr3 135702097 135702127 -82335031 + AT_rich Low_complexity Low_complexity 1 30 0 322 212 0 110 chr3 135702429 135702547 -82334611 + L1ME4a LINE L1 5964 6068 -53 2266 97 0 0 chr3 135702878 135703166 -82333992 - AluSq SINE Alu -25 288 1 207 100 0 0 chr3 135703629 135703659 -82333499 + (TA)n Simple_repeat Simple_repeat 2 31 0 1008 137 26 0 chr3 135703659 135703812 -82333346 - FRAM SINE Alu -21 155 1 238 275 137 61 chr3 135703893 135704024 -82333134 - L2 LINE L2 -849 2465 2325 1926 161 0 3 chr3 135704574 135704873 -82332285 + AluJo SINE Alu 1 298 -14 2282 73 0 0 chr3 135705037 135705310 -82331848 + AluY SINE Alu 25 297 -14 1941 139 10 13 chr3 135705811 135706112 -82331046 - AluJb SINE Alu -12 300 1 1227 225 198 11 chr3 135706416 135706918 -82330240 + L1ME3A LINE L1 5561 6170 0 28 0 0 0 chr3 135707077 135707105 -82330053 + AT_rich Low_complexity Low_complexity 1 28 0 1213 135 56 94 chr3 135707109 135707376 -82329782 + AluJo SINE Alu 37 293 -19 2466 104 48 28 chr3 135707385 135707742 -82329416 + THE1B LTR MaLR 1 364 0 12643 86 8 1 chr3 135707742 135709311 -82327847 + THE1B-int LTR MaLR 1 1580 0 2489 93 48 34 chr3 135709311 135709667 -82327491 + THE1B LTR MaLR 1 361 -3 405 131 41 8 chr3 135709667 135709789 -82327369 + (TA)n Simple_repeat Simple_repeat 1 126 0 261 215 0 25 chr3 135709822 135709901 -82327257 + (TA)n Simple_repeat Simple_repeat 1 77 0 2262 101 0 29 chr3 135710444 135710760 -82326398 + AluSp SINE Alu 1 307 -6 4747 193 53 35 chr3 135710896 135712033 -82325125 + Charlie1a DNA MER1_type 1 1157 -298 185 143 0 20 chr3 135712197 135712246 -82324912 + (TA)n Simple_repeat Simple_repeat 1 48 0 886 137 8 8 chr3 135712261 135712392 -82324766 - FLAM_C SINE Alu -2 131 1 1539 177 0 39 chr3 135712396 135712707 -82324451 - AluJo SINE Alu -13 299 1 2177 118 0 7 chr3 135713552 135713856 -82323302 - AluSx SINE Alu -10 302 1 2631 194 35 123 chr3 135714214 135714419 -82322739 + L1ME1 LINE L1 5325 5546 -620 2286 107 0 10 chr3 135714419 135714729 -82322429 + AluSx SINE Alu 2 308 -4 2631 194 35 123 chr3 135714729 135715334 -82321824 + L1ME1 LINE L1 5546 6049 -117 2022 102 0 83 chr3 135715334 135715658 -82321500 + AluSx SINE Alu 1 297 -15 2631 194 35 123 chr3 135715658 135715760 -82321398 + L1ME1 LINE L1 6049 6158 -8 26 0 0 0 chr3 135715926 135715952 -82321206 + AT_rich Low_complexity Low_complexity 1 26 0 2434 84 3 0 chr3 135717105 135717414 -82319744 + AluSq SINE Alu 1 310 -3 1190 110 6 0 chr3 135717969 135718133 -82319025 - AluSg/x SINE Alu -16 296 132 995 145 0 0 chr3 135718265 135718417 -82318741 + AluSg/x SINE Alu 158 309 -3 237 217 0 0 chr3 135718427 135718473 -82318685 + AluJ/monomer SINE Alu 1 46 -253 1202 121 23 0 chr3 135718473 135718646 -82318512 - AluSx SINE Alu -135 177 1 431 185 0 0 chr3 135719142 135719223 -82317935 - L1PA16 LINE L1 -1 6165 6085 935 144 45 5 chr3 135719223 135719396 -82317762 - L1PA16 LINE L1 -324 5839 5667 285 197 121 0 chr3 135719595 135719661 -82317497 + L1MC/D LINE L1 5684 5757 -2051 188 343 65 0 chr3 135719752 135719860 -82317298 + L2 LINE L2 2623 2737 -577 1747 156 19 0 chr3 135719886 135720155 -82317003 - AluJb SINE Alu -38 274 1 189 194 15 90 chr3 135720541 135720608 -82316550 + L2 LINE L2 3179 3240 -73 752 191 57 0 chr3 135720782 135720923 -82316235 + AluJo SINE Alu 2 150 -162 1531 160 25 71 chr3 135720954 135721279 -82315879 + AluJo SINE Alu 1 310 -2 22 0 0 0 chr3 135721515 135721537 -82315621 + AT_rich Low_complexity Low_complexity 1 22 0 1889 151 0 39 chr3 135721537 135721849 -82315309 + AluSx SINE Alu 1 300 -12 1505 146 22 93 chr3 135721935 135722256 -82314902 + MLT2A2 LTR ERVL 1 298 -155 19043 90 20 14 chr3 135722282 135722367 -82314791 + HERVL-B3 LTR ERVL 2748 2831 -2823 2044 117 3 11 chr3 135722367 135722649 -82314509 + AluSq SINE Alu 1 280 -33 19043 90 20 14 chr3 135722649 135722676 -82314482 + HERVL-B3 LTR ERVL 2831 2856 -2798 1146 75 6 12 chr3 135722676 135722849 -82314309 + (GAAA)n Simple_repeat Simple_repeat 4 175 0 19043 90 20 14 chr3 135722849 135725552 -82311606 + HERVL-B3 LTR ERVL 2856 5654 0 2206 195 31 74 chr3 135725552 135726131 -82311027 + MLT2B3 LTR ERVL 1 554 0 1961 148 13 7 chr3 135726513 135726817 -82310341 + AluSx SINE Alu 5 310 -2 2331 98 3 3 chr3 135727012 135727317 -82309841 + AluSx SINE Alu 1 305 -7 1533 111 60 0 chr3 135727332 135727549 -82309609 - MER30 DNA MER1_type 0 230 1 367 316 90 19 chr3 135727550 135727705 -82309453 + MIR SINE MIR 32 197 -65 2107 132 3 0 chr3 135727941 135728237 -82308921 - AluSx SINE Alu -15 297 1 2036 137 3 6 chr3 135728406 135728719 -82308439 + AluSx SINE Alu 1 312 0 1744 138 87 4 chr3 135728756 135729032 -82308126 + AluSx SINE Alu 5 303 -9 183 316 0 63 chr3 135729493 135729572 -82307586 - MIR SINE MIR -115 93 20 792 162 0 42 chr3 135729679 135729821 -82307337 + MER2 DNA MER2_type 1 136 -209 843 184 0 0 chr3 135729826 135729951 -82307207 - FLAM_A SINE Alu -8 125 1 1520 167 4 0 chr3 135729991 135730230 -82306928 - AluJb SINE Alu -58 254 15 2018 132 21 0 chr3 135730253 135730541 -82306617 - AluSx SINE Alu -18 294 1 639 160 137 110 chr3 135730544 135730763 -82306395 + MER2 DNA MER2_type 121 345 0 183 286 20 0 chr3 135730766 135730815 -82306343 - L2 LINE L2 -1 3271 3222 1661 160 58 0 chr3 135730940 135731233 -82305925 + AluJo SINE Alu 1 310 -2 2027 96 64 3 chr3 135731438 135731720 -82305438 - AluSx SINE Alu -13 299 1 1625 171 0 58 chr3 135731753 135732062 -82305096 + AluJo SINE Alu 1 291 -21 324 0 0 0 chr3 135732066 135732102 -82305056 + (CA)n Simple_repeat Simple_repeat 2 37 0 530 210 0 114 chr3 135732191 135732266 -82304892 + MIR SINE MIR 7 54 -208 2170 118 16 0 chr3 135732266 135732572 -82304586 - AluSx SINE Alu -1 311 1 530 210 0 114 chr3 135732572 135732663 -82304495 + MIR SINE MIR 54 154 -108 250 264 92 0 chr3 135732662 135732749 -82304409 + L2 LINE L2 3169 3263 -9 * 1392 148 0 22 chr3 135733477 135733522 -82303636 - AluSg/x SINE Alu 0 312 268 1192 157 0 0 chr3 135733522 135733707 -82303451 - L1PB1 LINE L1 -8 6143 5959 1392 148 0 22 chr3 135733707 135733912 -82303246 - AluSg/x SINE Alu -44 268 84 1359 92 32 0 chr3 135733912 135734097 -82303061 - L1PB1 LINE L1 -179 5972 5782 2289 117 0 0 chr3 135734312 135734620 -82302538 + AluSx SINE Alu 1 308 -4 1802 122 32 61 chr3 135734805 135734935 -82302223 + AluSp SINE Alu 6 138 -175 2274 104 0 7 chr3 135734935 135735242 -82301916 + AluY SINE Alu 1 305 -6 1802 122 32 61 chr3 135735242 135735423 -82301735 + AluSp SINE Alu 138 308 -5 257 229 206 117 chr3 135735788 135735862 -82301296 + MIR SINE MIR 20 86 -176 1706 179 0 17 chr3 135735862 135736158 -82301000 + AluJo SINE Alu 1 291 -21 257 229 206 117 chr3 135736158 135736297 -82300861 + MIR SINE MIR 86 252 -10 427 296 72 33 chr3 135736397 135736549 -82300609 - L2 LINE L2 0 3272 3115 893 208 18 0 chr3 135736612 135736780 -82300378 + MER58A DNA MER1_type 44 214 -10 1399 111 0 10 chr3 135737386 135737584 -82299574 - AluSg/x SINE Alu 0 309 114 2066 103 7 31 chr3 135737998 135738290 -82298868 + AluSx SINE Alu 3 287 -25 407 35 18 0 chr3 135738385 135738442 -82298716 + (TA)n Simple_repeat Simple_repeat 2 59 0 377 265 129 27 chr3 135739321 135739468 -82297690 + MIR3 SINE MIR 37 198 -10 311 267 28 101 chr3 135739486 135739703 -82297455 + L1ME LINE L1 5197 5397 -749 314 264 27 27 chr3 135739765 135739875 -82297283 + L1ME LINE L1 5496 5605 -516 4444 200 46 26 chr3 135740239 135740564 -82296594 + Charlie1a DNA MER1_type 2 319 -2442 2136 123 0 3 chr3 135740564 135740866 -82296292 - AluSx SINE Alu -11 301 1 4444 200 46 26 chr3 135740866 135741592 -82295566 + Charlie1a DNA MER1_type 319 1074 -381 1808 108 8 8 chr3 135741593 135741834 -82295324 - AluSx SINE Alu -14 298 58 261 0 0 0 chr3 135741934 135741963 -82295195 + (CA)n Simple_repeat Simple_repeat 2 30 0 3671 145 15 0 chr3 135741963 135742808 -82294350 - L1P5 LINE L1 -364 5787 4930 424 209 109 76 chr3 135742812 135743022 -82294136 - LTR7 LTR ERV1 -8 442 226 9018 189 10 40 chr3 135743204 135745310 -82291848 - L1 LINE L1 -1209 4937 2894 465 329 30 12 chr3 135745346 135745510 -82291648 - MIR SINE MIR -15 247 81 474 316 28 117 chr3 135745528 135745555 -82291603 - L2 LINE L2 -2 3270 3242 1617 172 7 32 chr3 135745555 135745685 -82291473 + AluJo SINE Alu 5 137 -175 2291 105 0 19 chr3 135745685 135745998 -82291160 + AluSg SINE Alu 1 307 -3 1617 172 7 32 chr3 135745998 135746175 -82290983 + AluJo SINE Alu 137 304 -8 474 316 28 117 chr3 135746175 135746539 -82290619 - L2 LINE L2 -30 3242 2914 1686 168 25 0 chr3 135746551 135746848 -82290310 + AluJb SINE Alu 5 308 0 1657 191 83 142 chr3 135747371 135748048 -82289110 + LTR8A LTR ERV1 34 670 -57 743 168 129 45 chr3 135748074 135748229 -82288929 - AluJo/FRAM SINE Alu -1 311 144 1273 113 159 0 chr3 135748231 135748426 -82288732 - AluSg SINE Alu -84 226 1 408 209 183 26 chr3 135748470 135748623 -82288535 + MIR SINE MIR 67 243 -19 1840 147 34 20 chr3 135748739 135749032 -82288126 + AluJb SINE Alu 1 297 -15 345 47 0 0 chr3 135749774 135749817 -82287341 + (TATG)n Simple_repeat Simple_repeat 2 44 0 946 149 0 118 chr3 135749820 135750041 -82287117 - AluSg/x SINE Alu -31 279 85 203 301 116 27 chr3 135750108 135750254 -82286904 - MIR SINE MIR -25 237 79 375 195 24 0 chr3 135750340 135750422 -82286736 - MLT1D LTR MaLR 0 505 422 2109 144 0 0 chr3 135750422 135750728 -82286430 + AluSx SINE Alu 1 306 -6 183 100 0 0 chr3 135750901 135750931 -82286227 + (TTA)n Simple_repeat Simple_repeat 1 30 0 2116 114 0 0 chr3 135750931 135751211 -82285947 - AluSx SINE Alu -32 280 1 724 218 22 28 chr3 135751374 135751386 -82285772 + ALR/Alpha Satellite centromeric 1 12 -790 523 32 0 0 chr3 135751386 135751448 -82285710 + L1PA6 LINE L1 6091 6152 -2 724 218 22 28 chr3 135751448 135752160 -82284998 + ALR/Alpha Satellite centromeric 12 780 -22 701 224 35 23 chr3 135752210 135755657 -82281501 + ALR/Alpha Satellite centromeric 1 3488 -17 626 201 37 39 chr3 135755669 135756452 -82280706 + ALR/Alpha Satellite centromeric 1 781 -60 1436 135 65 8 chr3 135756815 135757060 -82280098 + L1MD3 LINE L1 7729 7987 -8 227 261 0 61 chr3 135757382 135757417 -82279741 + CT-rich Low_complexity Low_complexity 2 38 -71 2060 122 21 0 chr3 135757417 135757703 -82279455 - AluSx SINE Alu -15 297 6 227 261 0 61 chr3 135757703 135757782 -82279376 + CT-rich Low_complexity Low_complexity 38 109 0 217 0 0 0 chr3 135757863 135757887 -82279271 + (TTTTG)n Simple_repeat Simple_repeat 5 85 0 2058 131 0 0 chr3 135757887 135758169 -82278989 - AluSx SINE Alu -30 282 1 538 216 138 72 chr3 135758511 135758601 -82278557 + MER5A DNA MER1_type 8 91 -98 1692 126 65 14 chr3 135758601 135758878 -82278280 + AluSx SINE Alu 1 291 -21 538 216 138 72 chr3 135758878 135758954 -82278204 + MER5A DNA MER1_type 91 185 -4 437 317 111 19 chr3 135758965 135759173 -82277985 + L2 LINE L2 1082 1308 -2006 259 127 0 99 chr3 135759173 135759244 -82277914 + MER53 DNA DNA 1 64 -125 * 494 161 11 0 chr3 135759238 135759331 -82277827 - MER53 DNA DNA -95 94 1 1005 204 103 8 chr3 135759345 135759770 -82277388 - MLT2F LTR ERVL -152 511 1 2156 88 14 14 chr3 135759853 135760149 -82277009 + AluSg SINE Alu 1 296 -14 434 321 114 0 chr3 135760225 135760409 -82276749 - MIR SINE MIR -57 205 1 508 337 74 5 chr3 135760580 135760770 -82276388 + MIR SINE MIR 47 249 -13 263 245 170 11 chr3 135761099 135761193 -82275965 + L3 LINE CR1 1078 1186 -391 234 0 0 0 chr3 135761207 135761233 -82275925 + (T)n Simple_repeat Simple_repeat 1 26 0 195 270 190 10 chr3 135761249 135761349 -82275809 + L3 LINE CR1 1258 1375 -202 676 164 14 41 chr3 135761781 135761927 -82275231 - FLAM_C SINE Alu 0 143 2 975 187 21 16 chr3 135761956 135762265 -82274893 - MLT1A2 LTR MaLR -4 370 2 1831 146 7 0 chr3 135762303 135762591 -82274567 + AluSx SINE Alu 1 290 -22 1374 218 10 7 chr3 135762616 135762914 -82274244 - AluJo SINE Alu -7 305 7 468 51 0 0 chr3 135763176 135763235 -82273923 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 275 0 0 28 chr3 135763303 135763339 -82273819 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1784 144 4 0 chr3 135763341 135763619 -82273539 - AluSx SINE Alu -33 279 1 515 201 134 43 chr3 135763737 135763901 -82273257 + MIR SINE MIR 84 262 0 1843 147 0 14 chr3 135764802 135765095 -82272063 - AluJo SINE Alu -23 289 1 3260 106 9 0 chr3 135765118 135765562 -82271596 + MER83 LTR ERV1 1 448 0 230 280 93 34 chr3 135765621 135765739 -82271419 - MER5A DNA MER1_type -10 179 55 * 485 196 59 10 chr3 135765638 135765740 -82271418 + MER5A DNA MER1_type 40 146 -43 453 273 8 16 chr3 135765813 135765934 -82271224 + L2 LINE L2 3185 3304 -9 246 239 11 57 chr3 135766397 135766463 -82270695 + L2 LINE L2 3229 3292 -21 1458 138 154 8 chr3 135766463 135766723 -82270435 - AluJo SINE Alu -4 298 1 246 239 11 57 chr3 135766723 135766744 -82270414 + L2 LINE L2 3292 3312 -1 1911 142 13 0 chr3 135766848 135767151 -82270007 - AluSx SINE Alu -5 307 1 2226 119 0 0 chr3 135768030 135768341 -82268817 - AluSx SINE Alu 0 312 2 2016 117 13 3 chr3 135768897 135769196 -82267962 - AluSx SINE Alu -10 302 1 22 56 0 0 chr3 135769230 135769266 -82267892 + AT_rich Low_complexity Low_complexity 1 36 0 273 193 0 18 chr3 135769267 135769324 -82267834 + AluJo SINE Alu 86 141 -161 1981 128 0 3 chr3 135769329 135769626 -82267532 + AluSx SINE Alu 11 306 -6 1381 165 8 12 chr3 135769655 135769885 -82267273 + AluJb SINE Alu 59 289 -23 180 0 0 0 chr3 135769885 135769905 -82267253 + (TTAA)n Simple_repeat Simple_repeat 2 21 0 1381 165 8 12 chr3 135769905 135769917 -82267241 + AluJb SINE Alu 289 300 -12 2233 101 3 0 chr3 135769959 135770256 -82266902 + AluSx SINE Alu 1 298 -14 26 0 0 0 chr3 135771102 135771128 -82266030 + AT_rich Low_complexity Low_complexity 1 26 0 2248 107 0 0 chr3 135771205 135771513 -82265645 + AluSx SINE Alu 1 308 -4 755 188 0 0 chr3 135771514 135771631 -82265527 + FLAM_C SINE Alu 1 117 -16 23 33 0 0 chr3 135771645 135771675 -82265483 + AT_rich Low_complexity Low_complexity 1 30 0 2126 118 0 3 chr3 135771988 135772301 -82264857 + AluSx SINE Alu 1 312 0 1087 157 10 25 chr3 135772777 135772974 -82264184 - AluJo SINE Alu -107 205 12 1792 148 3 16 chr3 135773036 135773341 -82263817 - AluSq SINE Alu -12 301 1 797 161 0 29 chr3 135773860 135773997 -82263161 + FLAM_C SINE Alu 1 133 0 2187 86 0 13 chr3 135774418 135774719 -82262439 - AluSg SINE Alu -12 298 2 421 273 151 91 chr3 135775074 135775590 -82261568 - L2 LINE L2 -785 2529 2045 1526 145 55 4 chr3 135775590 135775845 -82261313 + AluJb SINE Alu 16 283 -29 2168 124 0 0 chr3 135775845 135776151 -82261007 + AluSx SINE Alu 1 306 -6 421 273 151 91 chr3 135776151 135776248 -82260910 - L2 LINE L2 -1268 2046 1878 619 179 73 8 chr3 135776288 135776411 -82260747 + MLT2B1 LTR ERVL 379 509 -11 356 258 0 11 chr3 135776880 135776969 -82260189 + L1ME LINE L1 5591 5678 -443 2057 116 23 0 chr3 135776969 135777270 -82259888 + AluSq SINE Alu 1 308 -5 1973 121 3 20 chr3 135778171 135778468 -82258690 + AluSx SINE Alu 1 292 -20 336 186 31 212 chr3 135778792 135778985 -82258173 + MIR SINE MIR 64 221 -41 728 273 118 44 chr3 135779225 135779657 -82257501 + MLT1F1 LTR MaLR 99 562 -5 1128 170 5 5 chr3 135779709 135779915 -82257243 + AluJo SINE Alu 87 292 -20 1340 146 94 0 chr3 135779981 135780214 -82256944 - AluJo SINE Alu -25 287 33 518 270 47 0 chr3 135780748 135780963 -82256195 + L1MB7 LINE L1 4971 5195 -951 2282 81 0 0 chr3 135781246 135781544 -82255614 + AluSx SINE Alu 1 298 -14 187 206 0 0 chr3 135782341 135782375 -82254783 + L2 LINE L2 3280 3313 0 203 305 0 0 chr3 135782565 135782624 -82254534 + (CTG)n Simple_repeat Simple_repeat 2 60 0 23 54 0 0 chr3 135783246 135783283 -82253875 + GC_rich Low_complexity Low_complexity 1 37 0 2677 13 0 0 chr3 135783750 135784052 -82253106 - AluYa5 SINE Alu -9 302 1 256 308 50 50 chr3 135784291 135784411 -82252747 + MIR3 SINE MIR 88 207 -1 1732 100 0 0 chr3 135784414 135784645 -82252513 + AluSx SINE Alu 1 231 -81 3946 55 27 0 chr3 135784645 135785120 -82252038 + LTR2B LTR ERV1 1 488 -2 492 136 0 0 chr3 135785122 135785203 -82251955 + AluSp/q SINE Alu 228 308 -5 2323 88 0 0 chr3 135785205 135785511 -82251647 + AluY SINE Alu 1 306 -5 1888 218 48 34 chr3 135785513 135785686 -82251472 + L1MB7 LINE L1 5612 5781 -403 2201 99 17 0 chr3 135785686 135785988 -82251170 + AluSx SINE Alu 1 307 -5 620 191 17 9 chr3 135785997 135786112 -82251046 + FLAM_A SINE Alu 1 116 -17 1888 218 48 34 chr3 135786112 135786493 -82250665 + L1MB7 LINE L1 5788 6184 0 534 296 36 5 chr3 135786500 135786696 -82250462 - L2 LINE L2 -623 2691 2490 1311 157 23 54 chr3 135786702 135786963 -82250195 + LTR8 LTR ERV1 1 253 -438 1559 90 5 0 chr3 135786965 135787176 -82249982 + AluSp SINE Alu 1 212 -101 1456 170 8 0 chr3 135787176 135787429 -82249729 + AluJb SINE Alu 44 298 -14 481 200 168 0 chr3 135787800 135787925 -82249233 + MIR SINE MIR 4 149 -113 1359 193 49 69 chr3 135787926 135788273 -82248885 + MLT1A2 LTR MaLR 19 358 -16 226 291 17 86 chr3 135788278 135788395 -82248763 + MIR SINE MIR 154 262 0 736 229 172 34 chr3 135788690 135788810 -82248348 + L2 LINE L2 3016 3118 -195 2211 95 3 0 chr3 135788810 135789114 -82248044 - AluSx SINE Alu -7 305 1 736 229 172 34 chr3 135789114 135789255 -82247903 + L2 LINE L2 3118 3313 0 575 239 83 0 chr3 135789256 135789404 -82247754 + MIR SINE MIR 3 162 -46 1713 143 29 38 chr3 135789414 135789553 -82247605 + AluJb SINE Alu 1 140 -172 2185 107 0 0 chr3 135789553 135789852 -82247306 + AluSx SINE Alu 1 299 -13 1713 143 29 38 chr3 135789852 135790027 -82247131 + AluJb SINE Alu 140 312 0 2204 102 3 6 chr3 135790336 135790650 -82246508 + AluSp SINE Alu 1 313 0 369 235 0 12 chr3 135791594 135791675 -82245483 + MER103 DNA DNA 43 122 -44 1960 115 23 30 chr3 135791777 135792081 -82245077 - AluSx SINE Alu -10 302 1 774 181 0 0 chr3 135792081 135792197 -82244961 - AluJo/FLAM SINE Alu -186 116 1 273 211 0 0 chr3 135792231 135792283 -82244875 + LTR30 LTR ERV1 1 52 -670 1310 105 104 23 chr3 135792283 135792528 -82244630 + LTR12 LTR ERV1 53 2021 -417 329 273 10 0 chr3 135792528 135792627 -82244531 + LTR30 LTR ERV1 544 643 -79 742 136 0 0 chr3 135792628 135792731 -82244427 + LTR12 LTR ERV1 481 583 -131 19655 114 9 12 chr3 135792752 135795570 -82241588 + HERV9 LTR ERV1 58 2866 -5533 932 115 31 0 chr3 135795562 135795692 -82241466 + LTR12 LTR ERV1 347 480 -234 * 1993 116 6 31 chr3 135795877 135796196 -82240962 + AluSx SINE Alu 1 311 -1 299 336 90 0 chr3 135796803 135796937 -82240221 - Charlie8 DNA MER1_type -2140 277 132 285 163 0 0 chr3 135796932 135796975 -82240183 + AluS SINE Alu 27 69 -231 * 246 195 0 0 chr3 135796966 135797007 -82240151 - Alu SINE Alu -258 44 4 * 280 271 42 51 chr3 135797011 135797043 -82240115 - Charlie8 DNA MER1_type -224 117 86 2311 82 0 0 chr3 135797043 135797337 -82239821 - AluY SINE Alu -17 294 1 280 271 42 51 chr3 135797337 135797422 -82239736 - Charlie8 DNA MER1_type -255 86 1 1506 141 0 43 chr3 135797528 135797784 -82239374 + AluSx SINE Alu 1 245 -67 1776 125 0 14 chr3 135797932 135798219 -82238939 + AluSx SINE Alu 30 312 0 833 146 7 28 chr3 135798222 135798366 -82238792 + L1M4 LINE L1 5496 5636 -538 * 2630 188 149 0 chr3 135798342 135799050 -82238108 + L1P4 LINE L1 4556 5379 -783 1220 168 5 0 chr3 135799055 135799264 -82237894 + AluSg/x SINE Alu 85 294 -18 1343 129 88 0 chr3 135799267 135799563 -82237595 + L1P4 LINE L1 5373 5738 -428 1333 216 0 20 chr3 135799563 135799859 -82237299 + AluSx SINE Alu 1 290 -12 4457 140 28 25 chr3 135799880 135800252 -82236906 + L1PA16 LINE L1 5364 5734 -432 1728 166 23 13 chr3 135800252 135800560 -82236598 + AluJb SINE Alu 1 311 -1 2077 129 3 0 chr3 135800561 135800871 -82236287 + AluSx SINE Alu 2 312 0 4457 140 28 25 chr3 135800871 135801281 -82235877 + L1PA16 LINE L1 5733 6150 -16 2654 193 16 17 chr3 135801337 135801670 -82235488 + L1MB4 LINE L1 5595 5927 -253 793 144 151 183 chr3 135801670 135802135 -82235023 - LTR7 LTR ERV1 0 450 1 2654 193 16 17 chr3 135802135 135802335 -82234823 + L1MB4 LINE L1 5927 6129 -51 1530 176 30 23 chr3 135802335 135802637 -82234521 + AluJo SINE Alu 1 304 -8 2654 193 16 17 chr3 135802637 135802677 -82234481 + L1MB4 LINE L1 6129 6168 -12 1448 142 17 0 chr3 135802680 135802912 -82234246 - AluJb SINE Alu -1 311 76 968 151 13 0 chr3 135803012 135803171 -82233987 - MLT1B LTR MaLR -68 322 162 1492 155 157 37 chr3 135803174 135803358 -82233800 - LTR54B LTR ERV1 -1 497 337 1408 186 71 7 chr3 135803358 135803638 -82233520 + AluJo SINE Alu 2 299 -13 1492 155 157 37 chr3 135803638 135803885 -82233273 - LTR54B LTR ERV1 -161 337 14 1894 149 7 0 chr3 135803885 135804186 -82232972 - AluSx SINE Alu -9 303 1 279 0 0 0 chr3 135804530 135804561 -82232597 + (A)n Simple_repeat Simple_repeat 1 31 0 712 117 0 29 chr3 135805007 135805110 -82232048 + AluS SINE Alu 2 101 -211 1900 88 0 8 chr3 135805112 135805372 -82231786 - AluSq SINE Alu -9 304 47 1270 196 76 89 chr3 135805470 135805919 -82231239 + LTR7 LTR ERV1 1 443 -7 1535 197 23 0 chr3 135806575 135806875 -82230283 + AluJo SINE Alu 1 307 -5 272 271 115 16 chr3 135807945 135808067 -82229091 + MIR SINE MIR 20 153 -109 1689 157 21 0 chr3 135808071 135808351 -82228807 - AluJo SINE Alu 0 312 27 937 164 19 13 chr3 135808351 135808510 -82228648 - FRAM SINE Alu -17 159 1 323 189 0 0 chr3 135808770 135808823 -82228335 + Charlie3 DNA MER1_type 1 53 -2657 443 228 0 0 chr3 135808823 135808902 -82228256 - AluS SINE Alu -233 80 2 199 0 0 0 chr3 135808913 135808935 -82228223 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2268 95 0 0 chr3 135808935 135809219 -82227939 - AluSx SINE Alu -1 305 1 1460 118 122 22 chr3 135809222 135809493 -82227665 - AluSx SINE Alu -14 298 1 22 35 0 0 chr3 135809500 135809529 -82227629 + AT_rich Low_complexity Low_complexity 1 29 0 2072 76 31 17 chr3 135809663 135809951 -82227207 - AluSq SINE Alu -21 292 1 2301 74 10 0 chr3 135810356 135810483 -82226675 + AluSq SINE Alu 1 125 -188 243 0 0 0 chr3 135810483 135810510 -82226648 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2301 74 10 0 chr3 135810510 135810680 -82226478 + AluSq SINE Alu 125 301 -12 23 0 0 0 chr3 135811097 135811120 -82226038 + GC_rich Low_complexity Low_complexity 1 23 0 333 68 0 0 chr3 135811344 135811388 -82225770 + (GGCTG)n Simple_repeat Simple_repeat 3 46 0 1498 116 30 26 chr3 135812183 135812284 -82224874 - AluJb SINE Alu -78 234 135 1813 135 14 35 chr3 135812284 135812605 -82224553 - AluSx SINE Alu 0 315 1 1498 116 30 26 chr3 135812605 135812735 -82224423 - AluJb SINE Alu -177 135 1 1717 185 0 10 chr3 135812851 135813149 -82224009 - AluJo SINE Alu -17 295 1 2136 117 3 3 chr3 135813332 135813632 -82223526 - AluSx SINE Alu -12 300 1 398 265 34 17 chr3 135814030 135814147 -82223011 - MIR3 SINE MIR -86 122 4 798 73 9 9 chr3 135814242 135814352 -82222806 - HY1 scRNA scRNA -2 110 1 2089 138 0 0 chr3 135814475 135814772 -82222386 - AluSx SINE Alu -15 297 1 361 73 36 0 chr3 135815287 135815342 -82221816 - L1PA6 LINE L1 -7 6147 6091 635 221 34 41 chr3 135815342 135815805 -82221353 - ALR/Alpha Satellite centromeric 0 1538 1073 2171 121 0 19 chr3 135815805 135816119 -82221039 - AluSx SINE Alu -4 308 1 635 221 34 41 chr3 135816119 135816162 -82220996 - ALR/Alpha Satellite centromeric -465 1073 1031 294 29 0 0 chr3 135816162 135816197 -82220961 + (TA)n Simple_repeat Simple_repeat 2 36 0 2062 145 10 0 chr3 135816197 135816494 -82220664 - AluSx SINE Alu -12 300 1 635 221 34 41 chr3 135816494 135816891 -82220267 - ALR/Alpha Satellite centromeric -505 1033 1 407 127 0 0 chr3 135816891 135816946 -82220212 + AluSp SINE Alu 126 180 -133 504 237 37 36 chr3 135816946 135818537 -82218621 - ALR/Alpha Satellite centromeric -5 1593 1 477 236 36 66 chr3 135818627 135818719 -82218439 - ALR/Alpha Satellite centromeric -5 1005 912 1992 137 14 14 chr3 135818719 135819012 -82218146 - AluSx SINE Alu -19 293 1 477 236 36 66 chr3 135819012 135819156 -82218002 - ALR/Alpha Satellite centromeric -98 912 765 2057 132 10 7 chr3 135819156 135819466 -82217692 - AluSq SINE Alu -2 311 1 477 236 36 66 chr3 135819466 135819664 -82217494 - ALR/Alpha Satellite centromeric -245 765 1 421 245 35 35 chr3 135819695 135820044 -82217114 - ALR/Alpha Satellite centromeric -5 349 1 2050 125 0 14 chr3 135820115 135820429 -82216729 + AluSx SINE Alu 8 317 0 419 239 13 63 chr3 135820455 135820675 -82216483 - ALR/Alpha Satellite centromeric -5 209 1 286 135 0 10 chr3 135820681 135820734 -82216424 - Alu SINE Alu -262 40 1 * 404 257 48 25 chr3 135820726 135821259 -82215899 - ALR/Alpha Satellite centromeric -5 545 1 400 259 25 30 chr3 135821384 135821957 -82215201 - ALR/Alpha Satellite centromeric -5 570 1 486 244 40 39 chr3 135822053 135823976 -82213182 - ALR/Alpha Satellite centromeric -5 2300 70 2343 99 3 0 chr3 135823976 135824280 -82212878 - AluY SINE Alu -6 305 1 486 244 40 39 chr3 135824280 135824351 -82212807 - ALR/Alpha Satellite centromeric -2235 70 1 380 235 42 39 chr3 135824373 135824605 -82212553 - ALR/Alpha Satellite centromeric -4 232 1 1331 222 20 0 chr3 135824648 135824945 -82212213 + L1P LINE L1 4883 5185 -961 359 109 1 0 chr3 135824939 135825028 -82212130 + L1M LINE L1 5232 5321 -822 * 2029 103 0 4 chr3 135825905 135826166 -82210992 - AluSc SINE Alu -19 290 31 1808 187 58 32 chr3 135826166 135826696 -82210462 + pTR5 LTR ERV1 743 1286 -1152 570 243 40 7 chr3 135826681 135826833 -82210325 + pTR5 LTR ERV1 1187 1343 -1095 * 3210 138 160 90 chr3 135826850 135827618 -82209540 + LTR12 LTR ERV1 5 826 0 231 239 133 53 chr3 135828901 135829014 -82208144 - MER5B DNA MER1_type 0 178 57 254 153 24 47 chr3 135829024 135829109 -82208049 + (TATATG)n Simple_repeat Simple_repeat 5 87 0 2622 48 0 19 chr3 135829898 135830213 -82206945 - AluY SINE Alu -2 309 1 24 0 0 0 chr3 135830936 135830960 -82206198 + AT_rich Low_complexity Low_complexity 1 24 0 2145 124 0 0 chr3 135831178 135831485 -82205673 - AluSx SINE Alu 0 307 1 1400 76 0 6 chr3 135832293 135832464 -82204694 + AluSg SINE Alu 1 170 -140 376 61 0 0 chr3 135832609 135832658 -82204500 + AluSg/q SINE Alu 175 223 -80 * 1375 171 43 0 chr3 135832657 135832915 -82204243 + MER2 DNA MER2_type 77 345 0 189 107 0 0 chr3 135832918 135832946 -82204212 + (CATATA)n Simple_repeat Simple_repeat 2 29 0 560 77 0 0 chr3 135832948 135833026 -82204132 + L1MA1 LINE L1 6225 6302 0 27 49 0 0 chr3 135833026 135833067 -82204091 + AT_rich Low_complexity Low_complexity 1 41 0 1979 131 3 7 chr3 135833102 135833399 -82203759 - AluSq SINE Alu -17 296 1 2203 181 28 2 chr3 135833719 135834116 -82203042 - MER73 LTR ERVL 0 644 238 206 293 57 57 chr3 135837198 135837321 -82199837 - MIR SINE MIR -62 146 24 207 0 0 0 chr3 135838098 135838121 -82199037 + (A)n Simple_repeat Simple_repeat 1 23 0 471 246 131 10 chr3 135838600 135838799 -82198359 + MIR SINE MIR 10 232 -30 184 244 0 0 chr3 135839303 135839344 -82197814 + L2 LINE L2 3022 3062 -251 671 266 89 34 chr3 135839391 135839868 -82197290 - L2 LINE L2 -10 3303 2794 2095 135 0 19 chr3 135840159 135840470 -82196688 + AluJb SINE Alu 1 305 -7 1240 231 247 33 chr3 135841330 135843140 -82194018 - SATR1 Satellite Satellite -19 2196 1 794 220 291 0 chr3 135843178 135843446 -82193712 - SATR1 Satellite Satellite -108 362 17 1001 204 316 0 chr3 135843479 135843827 -82193331 - SATR1 Satellite Satellite -1 469 12 1116 220 239 39 chr3 135843850 135845428 -82191730 - SATR1 Satellite Satellite -2 1892 1 989 205 285 22 chr3 135845466 135846344 -82190814 - SATR1 Satellite Satellite -1 1109 1 519 255 336 10 chr3 135846366 135846888 -82190270 - SATR1 Satellite Satellite -3 691 1 1777 218 132 30 chr3 135846901 135847796 -82189362 - SATR1 Satellite Satellite -1 985 1 2225 175 106 11 chr3 135847830 135848397 -82188761 - SATR1 Satellite Satellite -1 621 1 35 24 0 0 chr3 135848466 135848508 -82188650 + AT_rich Low_complexity Low_complexity 1 42 0 303 179 7 64 chr3 135848547 135848687 -82188471 + (TTA)n Simple_repeat Simple_repeat 1 132 0 657 170 12 67 chr3 135848817 135848982 -82188176 + LTR2 LTR ERV1 272 427 -22 435 176 0 0 chr3 135848996 135849070 -82188088 - tRNA-Glu-GAG tRNA tRNA 0 75 2 32492 97 12 9 chr3 135849071 135853577 -82183581 + HERVE LTR ERV1 647 5165 -2648 2294 177 111 7 chr3 135853577 135855047 -82182111 - SATR1 Satellite Satellite 0 1623 1 2016 213 164 56 chr3 135855078 135856800 -82180358 - SATR1 Satellite Satellite -1 1907 1 1000 218 278 3 chr3 135856828 135857159 -82179999 - SATR1 Satellite Satellite -1 469 48 1433 113 27 14 chr3 135857161 135857382 -82179776 - AluSq SINE Alu -89 224 1 752 243 40 0 chr3 135859277 135859479 -82177679 + MER6B DNA MER2_type 1 210 0 377 217 36 0 chr3 135859584 135859667 -82177491 - MER5B DNA MER1_type -6 172 87 270 0 0 0 chr3 135859692 135859722 -82177436 + (T)n Simple_repeat Simple_repeat 1 30 0 2240 113 0 40 chr3 135859898 135860224 -82176934 - AluSp SINE Alu 0 313 1 263 266 105 35 chr3 135860229 135860372 -82176786 - HsTC2 DNA Tc2 -115 1783 1631 1343 204 3 75 chr3 135860414 135860597 -82176561 + L1MA4 LINE L1 5771 5913 -387 1845 151 0 3 chr3 135860597 135860881 -82176277 + AluSx SINE Alu 1 283 -29 1343 204 3 75 chr3 135860881 135861085 -82176073 + L1MA4 LINE L1 5913 6130 -170 2100 131 3 3 chr3 135861165 135861471 -82175687 - AluSp SINE Alu -6 307 2 2820 237 27 43 chr3 135861517 135862509 -82174649 + L1MB3 LINE L1 4818 5824 -359 1975 125 4 4 chr3 135862509 135862788 -82174370 + AluSx SINE Alu 1 279 -33 230 71 0 24 chr3 135862794 135862836 -82174322 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 2820 237 27 43 chr3 135862836 135862940 -82174218 + L1MB3 LINE L1 5829 5933 -250 2062 155 0 0 chr3 135862940 135863244 -82173914 + AluSx SINE Alu 1 304 -8 2820 237 27 43 chr3 135863244 135863496 -82173662 + L1MB3 LINE L1 5933 6153 -30 25 0 0 0 chr3 135863513 135863538 -82173620 + AT_rich Low_complexity Low_complexity 1 25 0 212 158 0 0 chr3 135864278 135864316 -82172842 + (ATG)n Simple_repeat Simple_repeat 3 40 0 302 355 65 33 chr3 135864335 135864549 -82172609 - MIR SINE MIR -10 252 32 2268 99 0 7 chr3 135864943 135865246 -82171912 + AluSg SINE Alu 1 301 -9 192 356 59 0 chr3 135865291 135865392 -82171766 + MIR SINE MIR 30 136 -72 231 310 44 26 chr3 135865629 135865742 -82171416 + L2 LINE L2 3158 3272 0 2078 123 0 7 chr3 135865807 135866108 -82171050 - AluSc SINE Alu -10 299 1 846 230 242 28 chr3 135867805 135869049 -82168109 - SATR1 Satellite Satellite -1 1509 1 794 239 320 8 chr3 135869101 135870148 -82167010 - SATR1 Satellite Satellite -3 1372 1 1297 238 110 38 chr3 135870361 135871400 -82165758 - SATR1 Satellite Satellite 0 1113 1 21 36 0 0 chr3 135871446 135871474 -82165684 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr3 135871491 135871517 -82165641 + AT_rich Low_complexity Low_complexity 1 26 0 236 221 12 55 chr3 135871561 135871724 -82165434 + (TTA)n Simple_repeat Simple_repeat 1 156 0 27854 97 10 11 chr3 135871752 135875814 -82161344 + HERVE LTR ERV1 1108 5165 -2648 2002 184 106 16 chr3 135875814 135877970 -82159188 - SATR1 Satellite Satellite 0 2348 1 706 236 278 3 chr3 135877998 135878329 -82158829 - SATR1 Satellite Satellite -1 469 48 1435 120 27 31 chr3 135878331 135878556 -82158602 - AluSq SINE Alu -89 224 1 775 213 46 0 chr3 135880452 135880649 -82156509 + MER6B DNA MER2_type 5 210 0 363 295 20 20 chr3 135880751 135880900 -82156258 - MER5B DNA MER1_type -3 175 27 2217 127 0 13 chr3 135881045 135881231 -82155927 - AluSp SINE Alu -1 312 130 207 0 0 0 chr3 135881231 135881254 -82155904 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2217 127 0 13 chr3 135881254 135881383 -82155775 - AluSp SINE Alu -183 130 1 292 252 105 35 chr3 135881388 135881531 -82155627 - HsTC2 DNA Tc2 -113 1785 1633 1045 231 16 72 chr3 135881569 135881752 -82155406 + L1MA4 LINE L1 5767 5918 -382 1787 158 0 3 chr3 135881752 135882036 -82155122 + AluSx SINE Alu 1 283 -29 1045 231 16 72 chr3 135882036 135882238 -82154920 + L1MA4 LINE L1 5918 6130 -170 2863 0 0 0 chr3 135882470 135882769 -82154389 - AluYa5 SINE Alu -12 299 1 447 308 26 13 chr3 135882780 135882936 -82154222 - MIR SINE MIR -64 198 41 727 204 43 104 chr3 135882965 135883196 -82153962 + MER20 DNA MER1_type 1 217 -2 1447 197 14 30 chr3 135884513 135884808 -82152350 - AluJb SINE Alu -22 290 1 664 290 16 36 chr3 135884891 135885139 -82152019 - MIR SINE MIR -12 250 8 444 273 109 74 chr3 135887262 135887694 -82149464 - L2 LINE L2 -11 3261 2815 212 297 99 0 chr3 135888182 135888283 -82148875 + L2 LINE L2 3178 3288 -25 507 266 16 0 chr3 135888385 135888509 -82148649 - MIR SINE MIR -38 224 99 2562 231 55 7 chr3 135888525 135889128 -82148030 + ERVL LTR ERVL 1518 2149 -3615 190 367 17 0 chr3 135889133 135889193 -82147965 - MIR SINE MIR -187 75 15 1930 143 4 0 chr3 135889498 135889806 -82147352 + AluSc SINE Alu 1 309 0 320 87 0 0 chr3 135890044 135890090 -82147068 - Alu SINE Alu -9 292 247 2093 192 109 4 chr3 135890191 135891472 -82145686 - SATR1 Satellite Satellite 0 1415 1 1700 171 105 30 chr3 135891500 135891927 -82145231 - SATR1 Satellite Satellite 0 470 12 752 227 278 3 chr3 135891955 135892286 -82144872 - SATR1 Satellite Satellite -1 469 48 1265 111 131 5 chr3 135892288 135892487 -82144671 - AluSq SINE Alu -89 224 1 726 228 46 0 chr3 135894380 135894577 -82142581 + MER6B DNA MER2_type 5 210 0 412 228 67 74 chr3 135894682 135894831 -82142327 - MER5B DNA MER1_type -6 172 25 2129 133 0 28 chr3 135894974 135895296 -82141862 - AluSp SINE Alu 0 313 1 233 276 103 35 chr3 135895301 135895446 -82141712 - HsTC2 DNA Tc2 -113 1785 1631 1136 235 3 72 chr3 135895480 135895663 -82141495 + L1MA4 LINE L1 5767 5910 -390 1666 171 0 4 chr3 135895663 135895944 -82141214 + AluSx SINE Alu 1 280 -32 1136 235 3 72 chr3 135895944 135896151 -82141007 + L1MA4 LINE L1 5910 6130 -170 2146 113 3 3 chr3 135896230 135896531 -82140627 - AluSp SINE Alu -12 301 1 2715 249 23 45 chr3 135896576 135897569 -82139589 + L1MB3 LINE L1 4818 5831 -352 1922 143 3 7 chr3 135897569 135897870 -82139288 + AluSx SINE Alu 1 300 -12 2715 249 23 45 chr3 135897870 135897988 -82139170 + L1MB3 LINE L1 5831 5950 -233 1870 145 35 0 chr3 135897988 135898271 -82138887 + AluSx SINE Alu 3 295 -17 2715 249 23 45 chr3 135898271 135898523 -82138635 + L1MB3 LINE L1 5950 6153 -30 31 0 0 0 chr3 135898543 135898574 -82138584 + AT_rich Low_complexity Low_complexity 1 31 0 3541 210 18 64 chr3 135899033 135900049 -82137109 + LTR5 LTR ERVK 1 969 0 297 374 47 14 chr3 135900375 135900589 -82136569 - MIR SINE MIR -10 252 32 2126 128 0 6 chr3 135900982 135901294 -82135864 + AluSg SINE Alu 1 310 0 198 265 68 76 chr3 135901330 135901462 -82135696 + MIR3 SINE MIR 6 136 -72 270 231 75 75 chr3 135901679 135901813 -82135345 + L2 LINE L2 3139 3272 0 2281 96 0 3 chr3 135901874 135902175 -82134983 - AluY SINE Alu -11 300 1 909 223 213 41 chr3 135903876 135904831 -82132327 - SATR1 Satellite Satellite -2 1119 1 954 229 237 18 chr3 135904910 135905290 -82131868 - SATR1 Satellite Satellite -1 469 7 972 227 261 4 chr3 135905327 135906327 -82130831 - SATR1 Satellite Satellite -1 1256 1 403 278 272 4 chr3 135906358 135906734 -82130424 - SATR1 Satellite Satellite -1 476 1 1285 239 107 35 chr3 135906746 135907940 -82129218 - SATR1 Satellite Satellite -5 1280 1 21 36 0 0 chr3 135907988 135908016 -82129142 + AT_rich Low_complexity Low_complexity 1 28 0 283 206 11 71 chr3 135908035 135908219 -82128939 + (TTA)n Simple_repeat Simple_repeat 3 175 0 22 0 0 0 chr3 135908222 135908244 -82128914 + AT_rich Low_complexity Low_complexity 1 22 0 20362 98 15 10 chr3 135908298 135912350 -82124808 + HERVE LTR ERV1 1108 5165 -2648 2179 176 106 18 chr3 135912350 135914507 -82122651 - SATR1 Satellite Satellite 0 2346 1 789 242 278 3 chr3 135914535 135914866 -82122292 - SATR1 Satellite Satellite -1 469 48 1279 111 131 5 chr3 135914868 135915067 -82122091 - AluSq SINE Alu -89 224 1 677 228 46 0 chr3 135916960 135917157 -82120001 + MER6B DNA MER2_type 5 210 0 373 227 67 80 chr3 135917262 135917412 -82119746 - MER5B DNA MER1_type -6 172 25 2153 131 0 25 chr3 135917555 135917876 -82119282 - AluSp SINE Alu 0 313 1 238 276 103 35 chr3 135917881 135918026 -82119132 - HsTC2 DNA Tc2 -118 1780 1626 1216 249 2 67 chr3 135918060 135918243 -82118915 + L1MA4 LINE L1 5767 5960 -340 1691 171 0 4 chr3 135918243 135918524 -82118634 + AluSx SINE Alu 1 280 -32 1216 249 2 67 chr3 135918524 135918761 -82118397 + L1MA4 LINE L1 5960 6160 -140 2130 119 3 3 chr3 135918807 135919110 -82118048 - AluSp SINE Alu -10 303 1 2813 243 31 38 chr3 135919155 135920139 -82117019 + L1MB3 LINE L1 4818 5808 -375 1960 138 3 28 chr3 135920139 135920459 -82116699 + AluSx SINE Alu 1 312 0 2813 243 31 38 chr3 135920459 135920571 -82116587 + L1MB3 LINE L1 5808 5919 -264 2046 133 0 0 chr3 135920571 135920857 -82116301 + AluSx SINE Alu 10 295 -17 2813 243 31 38 chr3 135920857 135921102 -82116056 + L1MB3 LINE L1 5919 6148 -35 3296 216 20 78 chr3 135921616 135922644 -82114514 + LTR5 LTR ERVK 1 969 0 326 374 47 14 chr3 135922968 135923182 -82113976 - MIR SINE MIR -10 252 32 2078 117 0 55 chr3 135923576 135923902 -82113256 + AluSg SINE Alu 1 308 -2 276 235 31 10 chr3 135925025 135925123 -82112035 + L1M4 LINE L1 4623 4722 -1424 192 77 0 0 chr3 135925128 135925154 -82112004 + (TA)n Simple_repeat Simple_repeat 2 27 0 294 271 65 57 chr3 135925163 135925499 -82111659 - L1M4 LINE L1 -3201 2945 2607 272 260 216 61 chr3 135925540 135925721 -82111437 - MLT1J2 LTR MaLR -2 448 240 487 194 104 42 chr3 135925733 135925922 -82111236 - MLT1J1 LTR MaLR -198 211 1 238 307 35 0 chr3 135925946 135926060 -82111098 - L1M4 LINE L1 -3609 2537 2420 184 326 112 11 chr3 135926136 135926225 -82110933 - MIR3 SINE MIR -54 154 57 3806 134 116 68 chr3 135926329 135927724 -82109434 - pTR5 LTR ERV1 0 2438 66 443 272 258 16 chr3 135929011 135929445 -82107713 + L2 LINE L2 2243 2781 -533 317 277 9 36 chr3 135929525 135929637 -82107521 + L2 LINE L2 2920 3028 -244 246 32 0 0 chr3 135929699 135929730 -82107428 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1989 144 0 11 chr3 135929730 135930014 -82107144 - AluSq SINE Alu -32 281 1 181 309 21 41 chr3 135930325 135930422 -82106736 - MER5B DNA MER1_type -5 173 79 190 340 0 0 chr3 135930343 135930396 -82106762 + MER5A DNA MER1_type 35 87 -102 403 313 169 0 chr3 135930414 135930574 -82106584 + L2 LINE L2 2519 2705 -609 1377 177 40 12 chr3 135930574 135930823 -82106335 - AluJo SINE Alu -15 297 42 231 157 0 0 chr3 135930892 135930943 -82106215 + CT-rich Low_complexity Low_complexity 2 52 0 2509 65 0 0 chr3 135931589 135931881 -82105277 + AluY SINE Alu 1 292 -19 1926 140 7 4 chr3 135932114 135932428 -82104730 - AluSc SINE Alu 0 315 1 2592 234 55 7 chr3 135932798 135933401 -82103757 - ERVL LTR ERVL -3615 2149 1518 483 266 16 0 chr3 135933417 135933541 -82103617 + MIR SINE MIR 99 224 -38 207 343 0 0 chr3 135933639 135933706 -82103452 - L2 LINE L2 -21 3251 3185 363 280 104 77 chr3 135934260 135934664 -82102494 + L2 LINE L2 2847 3261 -11 623 294 16 36 chr3 135935910 135936158 -82101000 + MIR SINE MIR 8 250 -12 1664 182 3 27 chr3 135936241 135936538 -82100620 + AluJb SINE Alu 1 290 -22 683 235 50 54 chr3 135937855 135938088 -82099070 - MER20 DNA MER1_type -2 217 1 373 316 32 13 chr3 135938117 135938272 -82098886 + MIR SINE MIR 41 198 -64 2108 130 3 3 chr3 135938303 135938604 -82098554 - AluSc SINE Alu -8 301 1 2636 231 55 7 chr3 135938921 135939524 -82097634 - ERVL LTR ERVL -3615 2149 1518 512 231 9 0 chr3 135939540 135939648 -82097510 + MIR SINE MIR 99 207 -55 217 309 91 0 chr3 135939756 135939866 -82097292 - L2 LINE L2 -16 3297 3178 346 296 104 70 chr3 135940342 135940785 -82096373 + L2 LINE L2 2804 3261 -11 580 303 14 23 chr3 135942933 135943154 -82094004 + MIR SINE MIR 32 250 -12 1471 199 25 11 chr3 135943237 135943523 -82093635 + AluJb SINE Alu 1 290 -22 683 234 50 54 chr3 135944832 135945065 -82092093 - MER20 DNA MER1_type -2 217 1 387 331 43 11 chr3 135945094 135945278 -82091880 + MIR SINE MIR 41 230 -32 2218 125 0 0 chr3 135945282 135945586 -82091572 - AluSx SINE Alu -8 304 1 208 391 8 0 chr3 135946766 135946899 -82090259 - L2 LINE L2 -1026 2288 2155 1383 155 43 0 chr3 135946927 135947134 -82090024 - AluSx SINE Alu -96 216 1 25 31 0 0 chr3 135947134 135947166 -82089992 + AT_rich Low_complexity Low_complexity 1 32 0 2008 113 21 14 chr3 135947364 135947646 -82089512 + AluSx SINE Alu 3 286 -26 21 0 0 0 chr3 135947677 135947698 -82089460 + AT_rich Low_complexity Low_complexity 1 21 0 2350 138 62 36 chr3 135947733 135948057 -82089101 - L1MA8 LINE L1 -3 6288 5945 2031 154 6 3 chr3 135948057 135948368 -82088790 - AluJo SINE Alu 0 312 1 2350 138 62 36 chr3 135948368 135948544 -82088614 - L1MA8 LINE L1 -346 5945 5775 1017 189 31 0 chr3 135948951 135949147 -82088011 + MER58A DNA MER1_type 9 210 -14 2065 137 14 0 chr3 135950145 135950429 -82086729 + AluSx SINE Alu 1 288 -24 1443 151 36 0 chr3 135951041 135951260 -82085898 + AluSg SINE Alu 1 227 -83 482 142 19 47 chr3 135951325 135951431 -82085727 + AluSg SINE Alu 207 309 0 2029 81 3 0 chr3 135951520 135951804 -82085354 - L1PA8 LINE L1 -2 6170 5886 302 334 57 23 chr3 135951878 135952173 -82084985 - L1ME3A LINE L1 -245 5925 5612 304 271 0 52 chr3 135952495 135952591 -82084567 + MIR SINE MIR 102 192 -70 720 218 17 0 chr3 135953187 135953366 -82083792 - MER53 DNA DNA 0 189 8 2342 94 13 16 chr3 135954071 135954379 -82082779 - AluSq SINE Alu -6 307 1 296 294 54 90 chr3 135954532 135954886 -82082272 + L2 LINE L2 2914 3254 -18 306 232 168 32 chr3 135954891 135955016 -82082142 - MIR SINE MIR -115 147 6 543 209 11 6 chr3 135956063 135956240 -82080918 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 453 275 0 0 chr3 135956284 135956462 -82080696 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 482 272 92 11 chr3 135956535 135956719 -82080439 + MIR SINE MIR 12 210 -52 216 381 25 8 chr3 135956847 135956965 -82080193 - L2 LINE L2 -163 3109 2990 205 355 9 37 chr3 135957162 135957269 -82079889 + MIR SINE MIR 113 216 -46 2037 161 3 0 chr3 135957383 135957687 -82079471 + AluSx SINE Alu 1 305 -7 258 224 107 4 chr3 135958059 135958150 -82079008 + MIR SINE MIR 63 161 -47 1946 153 20 10 chr3 135958590 135958890 -82078268 - AluJb SINE Alu -9 303 1 306 243 118 71 chr3 135958892 135959258 -82077900 - L1MC5 LINE L1 -28 7933 7551 2000 135 14 7 chr3 135959342 135959631 -82077527 + AluSc SINE Alu 1 291 -18 282 315 30 42 chr3 135959928 135960093 -82077065 - MER5A DNA MER1_type -3 186 24 180 366 14 0 chr3 135960181 135960252 -82076906 + L2 LINE L2 3106 3177 -95 2192 133 3 16 chr3 135960640 135960949 -82076209 + AluSx SINE Alu 1 305 -7 1823 134 8 4 chr3 135961539 135961801 -82075357 + AluSx SINE Alu 1 263 -49 773 193 193 27 chr3 135961874 135962211 -82074947 - HAL1b LINE L1 -28 1320 928 929 264 118 16 chr3 135962702 135963152 -82074006 - HAL1b LINE L1 -415 933 438 2164 97 7 17 chr3 135963154 135963452 -82073706 - AluY SINE Alu -16 295 1 225 268 49 0 chr3 135963725 135963807 -82073351 - L2 LINE L2 -220 3052 2967 1309 189 39 142 chr3 135963822 135964281 -82072877 + MLT2B1 LTR ERVL 3 414 0 599 76 0 0 chr3 135964852 135964931 -82072227 + MADE1 DNA Mariner 2 80 0 626 346 23 20 chr3 135966278 135966581 -82070577 + MLT1I LTR MaLR 103 406 -3 790 224 14 33 chr3 135967777 135967991 -82069167 - MER20 DNA MER1_type -9 210 1 1704 165 3 29 chr3 135968140 135968449 -82068709 - AluJo SINE Alu -9 303 3 795 227 123 38 chr3 135968799 135969136 -82068022 + L1MB8 LINE L1 5738 6118 -54 830 168 0 0 chr3 135969208 135969345 -82067813 + FLAM_C SINE Alu 1 137 -6 1111 101 0 0 chr3 135969349 135969488 -82067670 + AluSx SINE Alu 1 139 -174 1215 138 11 0 chr3 135970365 135970539 -82066619 + AluSx SINE Alu 130 305 -7 962 142 0 20 chr3 135970543 135970691 -82066467 + FRAM SINE Alu 2 146 -30 356 113 32 0 chr3 135970693 135970755 -82066403 + (CATA)n Simple_repeat Simple_repeat 2 65 0 2739 137 18 18 chr3 135971054 135971499 -82065659 - L1MA7 LINE L1 -232 6059 5615 1001 167 88 0 chr3 135971494 135971710 -82065448 + L1MA7 LINE L1 6051 6285 -6 * 243 0 0 0 chr3 135972583 135972610 -82064548 + (T)n Simple_repeat Simple_repeat 1 27 0 204 236 19 142 chr3 135972674 135972780 -82064378 - L2 LINE L2 -7 3265 3173 3163 204 20 77 chr3 135973655 135974682 -82062476 - LTR5 LTR ERVK 0 969 1 1110 169 6 6 chr3 135974684 135974862 -82062296 - HERVK LTR ERVK -2 7241 7064 322 286 13 26 chr3 135974947 135975101 -82062057 + CT-rich Low_complexity Low_complexity 1 152 0 2636 104 8 0 chr3 135975203 135975568 -82061590 - HERVK LTR ERVK -1720 5523 5156 1015 124 45 6 chr3 135975967 135976144 -82061014 - L1MA4 LINE L1 -7 6293 6110 5654 151 42 4 chr3 135976152 135977295 -82059863 + L1PB1 LINE L1 4295 5393 -758 2249 94 3 0 chr3 135977295 135977582 -82059576 + AluSg SINE Alu 1 288 -22 197 33 33 0 chr3 135977585 135977615 -82059543 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5654 151 42 4 chr3 135977615 135977910 -82059248 + L1PB1 LINE L1 5394 5676 -475 216 0 0 0 chr3 135977910 135977934 -82059224 + (TA)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr3 135977933 135977953 -82059205 + (CA)n Simple_repeat Simple_repeat 2 21 0 * 5654 151 42 4 chr3 135977934 135978302 -82058856 + L1PB1 LINE L1 5676 6151 0 3865 133 20 109 chr3 135978305 135979182 -82057976 - L1MA4 LINE L1 -175 6125 5327 777 189 7 0 chr3 135979165 135979318 -82057840 - L1P LINE L1 -942 5204 5051 * 2037 133 14 0 chr3 135979419 135979705 -82057453 - AluY SINE Alu -21 290 1 1714 181 0 35 chr3 135979709 135980024 -82057134 - AluJo SINE Alu -8 304 1 1233 149 14 19 chr3 135980409 135980623 -82056535 + MER20 DNA MER1_type 7 219 0 390 215 97 0 chr3 135980777 135980870 -82056288 - MER91C DNA MER1_type -15 125 24 283 262 99 50 chr3 135981758 135981899 -82055259 + MLT1K LTR MaLR 116 263 -325 1526 181 31 31 chr3 135982180 135982473 -82054685 - AluJo SINE Alu -14 298 6 334 278 42 0 chr3 135982514 135982586 -82054572 - AluJ/FLAM SINE Alu -227 75 1 1735 192 45 51 chr3 135982598 135982689 -82054469 + MLT1C LTR MaLR 3 93 -374 2170 117 7 7 chr3 135982689 135982997 -82054161 + AluSp SINE Alu 1 308 -5 1735 192 45 51 chr3 135982997 135983373 -82053785 + MLT1C LTR MaLR 93 467 0 2493 79 0 0 chr3 135983378 135983682 -82053476 - AluY SINE Alu -7 304 1 1167 244 75 22 chr3 135983971 135984246 -82052912 + MLT1E1 LTR MaLR 3 262 -392 2347 109 0 0 chr3 135984246 135984550 -82052608 - AluSx SINE Alu -8 304 1 1167 244 75 22 chr3 135984550 135984817 -82052341 + MLT1E1 LTR MaLR 262 654 0 2195 144 0 0 chr3 135984865 135985177 -82051981 - AluSx SINE Alu 0 312 1 43349 53 4 4 chr3 135985600 135991752 -82045406 - L1PA4 LINE L1 0 6155 1 265 274 94 0 chr3 135991859 135991988 -82045170 + L2 LINE L2 2916 3066 -247 354 323 65 13 chr3 135992141 135992373 -82044785 - L2 LINE L2 -361 2953 2710 24 77 0 0 chr3 135992387 135992439 -82044719 + AT_rich Low_complexity Low_complexity 1 52 0 2117 151 0 0 chr3 135992447 135992758 -82044400 - AluSx SINE Alu -1 311 1 1347 174 25 39 chr3 135992783 135993065 -82044093 + AluJo SINE Alu 1 278 -34 600 206 38 0 chr3 135993568 135993699 -82043459 + L1MB4 LINE L1 6045 6180 0 2185 128 0 0 chr3 135993707 135994004 -82043154 + AluSx SINE Alu 1 297 -15 2094 113 3 42 chr3 135994166 135994477 -82042681 + AluJo SINE Alu 5 303 -9 1382 234 14 0 chr3 135994646 135994941 -82042217 + AluJo SINE Alu 2 300 -12 1429 194 33 30 chr3 135994959 135995288 -82041870 - L1MB5 LINE L1 -32 6142 5813 345 216 35 60 chr3 135995299 135995415 -82041743 + MER58C DNA MER1_type 103 215 0 231 250 125 27 chr3 135995800 135995912 -82041246 + MIR SINE MIR 3 125 -137 624 229 54 24 chr3 135996165 135996331 -82040827 + MLT1I LTR MaLR 232 402 -7 2264 101 20 0 chr3 135997100 135997398 -82039760 - AluSx SINE Alu -6 306 3 252 179 64 39 chr3 135997824 135997902 -82039256 - MLT1K LTR MaLR -1 587 508 1102 294 26 0 chr3 135997921 135998224 -82038934 - LTR16C LTR ERVL -17 474 164 2000 133 7 17 chr3 135998224 135998526 -82038632 - AluSg SINE Alu -11 299 1 372 266 39 73 chr3 135998683 135998942 -82038216 - MLT1K LTR MaLR -159 429 180 1152 99 4 2 chr3 135999141 135999395 -82037763 + AluSg SINE Alu 10 301 -11 315 0 0 0 chr3 135999681 135999716 -82037442 + (TG)n Simple_repeat Simple_repeat 1 35 0 485 247 62 17 chr3 135999716 135999884 -82037274 + MLT1H LTR MaLR 12 193 -356 590 100 0 118 chr3 135999884 135999927 -82037231 + MER4A LTR ERV1 2 48 -616 2283 92 0 10 chr3 135999927 136000230 -82036928 + AluSx SINE Alu 1 300 -12 590 100 0 118 chr3 136000230 136000296 -82036862 + MER4A LTR ERV1 48 98 -566 1880 99 169 91 chr3 136000296 136000669 -82036489 + MER4A LTR ERV1 263 664 0 304 275 194 19 chr3 136000818 136001029 -82036129 + MLT1H LTR MaLR 348 595 0 2423 92 3 0 chr3 136001648 136001954 -82035204 + AluSp SINE Alu 1 307 -6 4529 57 2 2 chr3 136002206 136002764 -82034394 - LTR6B LTR ERV1 0 558 1 2244 117 0 3 chr3 136002764 136003081 -82034077 - HERVS71 LTR ERV1 -69 8909 8594 * 14613 132 14 1 chr3 136003078 136005893 -82031265 - HERVS71 LTR ERV1 -1192 7786 4870 22046 133 25 2 chr3 136005908 136009064 -82028094 - HERVS71 LTR ERV1 -5748 3230 4 4022 96 18 4 chr3 136009066 136009616 -82027542 - LTR6B LTR ERV1 0 558 1 223 301 96 7 chr3 136009623 136009759 -82027399 - L3 LINE CR1 -200 1377 1230 1060 176 18 50 chr3 136009819 136009924 -82027234 - MER58A DNA MER1_type -2205 215 108 2515 133 78 2 chr3 136009924 136010322 -82026836 + MSTA LTR MaLR 1 428 0 1060 176 18 50 chr3 136010322 136010438 -82026720 - MER58A DNA MER1_type -2312 108 1 2006 143 10 3 chr3 136010478 136010778 -82026380 - AluSq SINE Alu -11 302 1 1074 111 0 0 chr3 136010778 136010905 -82026253 - AluSq/x SINE Alu -177 135 9 223 370 20 34 chr3 136010923 136011069 -82026089 - L3 LINE CR1 -381 1196 1053 1061 303 98 43 chr3 136011730 136011964 -82025194 + L2 LINE L2 2125 2345 -968 1488 157 0 67 chr3 136011964 136012277 -82024881 + AluJo SINE Alu 1 292 -20 1061 303 98 43 chr3 136012277 136012970 -82024188 + L2 LINE L2 2345 3101 -212 3550 123 86 26 chr3 136012979 136014051 -82023107 + MER11A LTR ERVK 1 1236 0 481 295 7 22 chr3 136014078 136014217 -82022941 + L2 LINE L2 3136 3272 0 802 230 42 98 chr3 136014554 136014632 -82022526 - MLT1I LTR MaLR -7 402 321 1788 140 32 4 chr3 136014632 136014911 -82022247 - AluSx SINE Alu -25 287 1 802 230 42 98 chr3 136014911 136015167 -82021991 - MLT1I LTR MaLR -88 321 87 1943 141 0 0 chr3 136015335 136015632 -82021526 - AluSx SINE Alu -15 297 1 370 333 55 68 chr3 136015683 136015902 -82021256 + MIR SINE MIR 1 216 -46 2115 114 13 0 chr3 136015906 136016205 -82020953 - AluSc SINE Alu -6 303 1 277 336 41 18 chr3 136016378 136016525 -82020633 + MIR3 SINE MIR 46 192 -54 2108 112 0 3 chr3 136016573 136016868 -82020290 - AluSc SINE Alu -15 294 1 1881 199 185 54 chr3 136016879 136017457 -82019701 - MLT1E1 LTR MaLR 0 654 1 1198 91 0 34 chr3 136017587 136017762 -82019396 + AluSc SINE Alu 1 169 -140 493 145 0 137 chr3 136017762 136017893 -82019265 - LTR2B LTR ERV1 -106 384 272 7812 48 5 0 chr3 136017921 136018888 -82018270 + L1P LINE L1 4279 5250 -896 2112 181 147 5 chr3 136018888 136019330 -82017828 + MLT1E LTR MaLR 89 593 0 204 286 33 55 chr3 136019588 136019617 -82017541 + L2 LINE L2 3201 3229 -84 1918 139 17 0 chr3 136019617 136019911 -82017247 - AluSx SINE Alu -13 299 1 204 286 33 55 chr3 136019911 136019972 -82017186 + L2 LINE L2 3229 3289 -24 225 324 28 60 chr3 136020000 136020182 -82016976 - MER5A DNA MER1_type -11 178 3 610 200 8 24 chr3 136020268 136020393 -82016765 + MER5B DNA MER1_type 5 127 -51 384 22 0 0 chr3 136020393 136020438 -82016720 + (TG)n Simple_repeat Simple_repeat 2 46 0 1878 130 7 3 chr3 136020438 136020722 -82016436 - AluSx SINE Alu -26 286 2 1250 180 21 57 chr3 136020727 136021010 -82016148 - L1MB5 LINE L1 0 6174 5902 497 239 182 23 chr3 136020980 136021156 -82016002 + L1MB5 LINE L1 5684 5887 -287 * 327 153 17 0 chr3 136021156 136021215 -82015943 + MER5B DNA MER1_type 119 178 0 1354 172 0 5 chr3 136021412 136021633 -82015525 - AluSx SINE Alu -92 220 1 2012 123 0 3 chr3 136021750 136022051 -82015107 + AluSc SINE Alu 1 300 -9 189 203 54 68 chr3 136022299 136022373 -82014785 + L3 LINE CR1 643 715 -862 180 0 0 0 chr3 136022671 136022691 -82014467 + (A)n Simple_repeat Simple_repeat 1 20 0 551 324 34 4 chr3 136022812 136023074 -82014084 + L2 LINE L2 2458 2727 -587 2121 64 4 4 chr3 136023122 136023425 -82013733 + AluY SINE Alu 1 303 0 228 300 0 0 chr3 136023480 136023540 -82013618 - MIR SINE MIR -60 148 89 335 311 35 81 chr3 136023581 136023683 -82013475 + L2 LINE L2 2804 2909 -363 2217 104 0 0 chr3 136023683 136023982 -82013176 + AluSq SINE Alu 1 299 -14 335 311 35 81 chr3 136023982 136024139 -82013019 + L2 LINE L2 2909 3051 -221 941 221 34 0 chr3 136024139 136024343 -82012815 - L1MB7 LINE L1 0 6184 5974 1146 98 75 0 chr3 136024346 136024519 -82012639 - AluSg/x SINE Alu -23 289 104 2029 184 24 0 chr3 136024519 136024895 -82012263 - L1MB7 LINE L1 -219 5959 5575 597 254 66 13 chr3 136025063 136025291 -82011867 - Charlie5 DNA MER1_type -42 2570 2331 1960 133 3 3 chr3 136025557 136025858 -82011300 - AluSc SINE Alu -8 301 1 568 279 91 44 chr3 136026813 136027110 -82010048 + MLT1H LTR MaLR 41 351 -198 421 176 39 98 chr3 136027108 136027210 -82009948 + MLT1H LTR MaLR 454 549 0 * 1364 190 23 39 chr3 136027385 136027695 -82009463 - AluJo SINE Alu -7 305 1 864 275 9 0 chr3 136027815 136028033 -82009125 + MER58A DNA MER1_type 4 223 -1 13498 187 39 35 chr3 136028250 136028661 -82008497 + L1M2 LINE L1 985 1393 -5455 2162 109 3 6 chr3 136028661 136028972 -82008186 + AluSg SINE Alu 1 310 0 13498 187 39 35 chr3 136028972 136030016 -82007142 + L1M2 LINE L1 1393 2431 -4417 957 196 0 0 chr3 136030016 136030174 -82006984 + FRAM SINE Alu 1 158 -8 13498 187 39 35 chr3 136030174 136030438 -82006720 + L1M2 LINE L1 2431 2692 -4156 2227 120 48 31 chr3 136030438 136030796 -82006362 - THE1B LTR MaLR 0 364 1 11117 106 19 11 chr3 136030796 136032364 -82004794 - THE1B-int LTR MaLR 0 1580 1 2122 144 48 20 chr3 136032364 136032718 -82004440 - THE1B LTR MaLR 0 364 1 13498 187 39 35 chr3 136032718 136033876 -82003282 + L1M2 LINE L1 2692 3844 -3004 243 0 0 0 chr3 136033876 136033903 -82003255 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 13498 187 39 35 chr3 136033903 136034926 -82002232 + L1M2 LINE L1 3844 4861 -1987 2028 134 10 0 chr3 136034926 136035225 -82001933 + AluSx SINE Alu 1 302 -10 13498 187 39 35 chr3 136035225 136035724 -82001434 + L1M2 LINE L1 4861 5356 -1492 2262 66 0 23 chr3 136035724 136036025 -82001133 + AluY SINE Alu 1 294 -17 13498 187 39 35 chr3 136036025 136036514 -82000644 + L1M2 LINE L1 5356 5900 -948 1165 200 0 5 chr3 136036614 136036834 -82000324 - AluSx SINE Alu -93 219 1 293 287 28 61 chr3 136036852 136037033 -82000125 - L1MC5 LINE L1 -51 7910 7736 180 0 0 0 chr3 136037068 136037088 -82000070 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 459 248 150 7 chr3 136037191 136037344 -81999814 - MER5A DNA MER1_type 0 189 15 648 219 176 16 chr3 136037541 136037606 -81999552 - MLT1D LTR MaLR 0 484 431 1893 145 3 7 chr3 136037606 136037910 -81999248 + AluSx SINE Alu 1 303 -9 648 219 176 16 chr3 136037910 136038083 -81999075 - MLT1D LTR MaLR -53 431 206 1870 96 48 8 chr3 136038125 136038470 -81998688 + LTR7 LTR ERV1 1 448 -2 19349 91 52 22 chr3 136038472 136041369 -81995789 + HERVH LTR ERV1 1 2984 -4729 6104 101 2 2 chr3 136041365 136042221 -81994937 + HERVH LTR ERV1 3138 3993 -3720 * 4485 143 0 1 chr3 136042223 136042882 -81994276 + HERVH LTR ERV1 4488 5145 -2568 1267 126 60 5 chr3 136042879 136043094 -81994064 + HERVH LTR ERV1 5593 5819 -1894 * 2276 109 53 16 chr3 136043094 136043470 -81993688 + HERVH LTR ERV1 7324 7713 0 2643 75 124 12 chr3 136043471 136043873 -81993285 + LTR7 LTR ERV1 2 448 -2 2190 97 3 0 chr3 136043889 136044187 -81992971 - AluSp SINE Alu -12 301 3 649 226 27 32 chr3 136044197 136044383 -81992775 - MLT1D LTR MaLR -320 185 1 3582 22 5 0 chr3 136044494 136044908 -81992250 + L1PA2 LINE L1 5740 6155 0 290 339 25 17 chr3 136045905 136046023 -81991135 - L2 LINE L2 -15 3298 3180 1805 146 6 41 chr3 136046061 136046377 -81990781 + AluSx SINE Alu 1 305 -7 432 0 0 0 chr3 136046663 136046711 -81990447 + (CAT)n Simple_repeat Simple_repeat 3 50 0 734 145 89 8 chr3 136046821 136046945 -81990213 + THE1B LTR MaLR 196 329 -35 2260 83 0 3 chr3 136047493 136047795 -81989363 - AluY SINE Alu -9 302 2 342 115 0 0 chr3 136047940 136047992 -81989166 + (GA)n Simple_repeat Simple_repeat 1 52 0 2064 123 3 0 chr3 136048307 136048599 -81988559 - AluSg SINE Alu -17 293 1 1135 167 14 28 chr3 136048664 136048880 -81988278 + MER73 LTR ERVL 432 644 0 242 264 0 113 chr3 136049368 136049425 -81987733 - MER5B DNA MER1_type -81 97 56 924 150 0 0 chr3 136049425 136049558 -81987600 + FLAM_A SINE Alu 1 133 0 242 264 0 113 chr3 136049558 136049606 -81987552 - MER5B DNA MER1_type -122 56 4 403 203 0 0 chr3 136049685 136049759 -81987399 - MER66B LTR ERV1 -412 74 1 860 138 0 8 chr3 136050121 136050251 -81986907 + FLAM_C SINE Alu 1 129 -4 1877 152 3 3 chr3 136050429 136050739 -81986419 - AluSx SINE Alu -2 310 1 419 251 22 95 chr3 136051447 136051585 -81985573 + MER5B DNA MER1_type 2 140 -49 1819 170 0 0 chr3 136051585 136051896 -81985262 - AluJo SINE Alu -1 311 1 419 251 22 95 chr3 136051896 136051943 -81985215 + MER5B DNA MER1_type 140 189 0 192 293 53 53 chr3 136051961 136052094 -81985064 + MER5B DNA MER1_type 7 139 -39 1317 232 106 21 chr3 136052509 136052581 -81984577 + MLT1C LTR MaLR 6 70 -397 1886 161 3 0 chr3 136052581 136052879 -81984279 + AluSx SINE Alu 1 299 -13 1317 232 106 21 chr3 136052879 136053229 -81983929 + MLT1C LTR MaLR 70 464 -3 2176 103 0 0 chr3 136053270 136053562 -81983596 + AluSp SINE Alu 1 292 -21 1462 133 26 113 chr3 136053781 136054126 -81983032 + AluYb8 SINE Alu 1 315 -3 308 191 16 16 chr3 136054307 136054370 -81982788 + AluJo SINE Alu 1 63 -239 3811 123 108 50 chr3 136054396 136054840 -81982318 + LTR1 LTR ERV1 1 507 -278 1861 52 0 4 chr3 136054840 136055070 -81982088 + AluY SINE Alu 16 244 -67 3811 123 108 50 chr3 136055070 136055367 -81981791 + LTR1 LTR ERV1 507 785 0 1395 148 0 79 chr3 136055370 136055660 -81981498 + AluJo SINE Alu 43 309 -3 183 358 30 0 chr3 136055667 136055734 -81981424 - MIR SINE MIR -119 89 21 1801 140 0 17 chr3 136056201 136056501 -81980657 + AluSx SINE Alu 1 295 -17 279 104 0 0 chr3 136056505 136056553 -81980605 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 1857 151 3 25 chr3 136056698 136057016 -81980142 - AluJo SINE Alu -1 311 1 527 266 82 13 chr3 136057538 136057696 -81979462 + MIR SINE MIR 79 247 -15 339 283 76 0 chr3 136057720 136057812 -81979346 + L2 LINE L2 3162 3260 -12 518 299 25 34 chr3 136058175 136058379 -81978779 + MIR SINE MIR 21 222 -40 2175 118 0 0 chr3 136058396 136058702 -81978456 + AluSq SINE Alu 1 306 -7 3248 123 68 8 chr3 136058789 136059286 -81977872 + MER1A DNA MER1_type 1 527 0 789 186 9 97 chr3 136059302 136059462 -81977696 + MER3 DNA MER1_type 4 140 -69 2095 119 3 0 chr3 136059462 136059757 -81977401 - AluSx SINE Alu -16 296 1 789 186 9 97 chr3 136059757 136059822 -81977336 + MER3 DNA MER1_type 140 209 0 791 265 94 8 chr3 136059971 136060205 -81976953 - MIR SINE MIR -6 256 3 273 29 0 0 chr3 136062197 136062231 -81974927 + (TG)n Simple_repeat Simple_repeat 1 34 0 2096 152 0 3 chr3 136062805 136063107 -81974051 + AluSg SINE Alu 1 301 -9 454 254 67 62 chr3 136063163 136063356 -81973802 - L2 LINE L2 0 3313 3120 900 198 90 0 chr3 136063481 136063693 -81973465 - LTR16A1 LTR ERVL 0 457 227 424 250 176 0 chr3 136064334 136064470 -81972688 - MIR SINE MIR -72 190 31 1577 159 67 25 chr3 136064475 136064758 -81972400 - AluJo SINE Alu -17 295 1 551 87 0 0 chr3 136064768 136064837 -81972321 - Alu SINE Alu -17 294 226 6700 59 12 0 chr3 136064837 136065613 -81971545 + LTR5 LTR ERVK 1 785 -184 46074 31 0 0 chr3 136065641 136071175 -81965983 + HERVK LTR ERVK 1 5534 -1709 14402 33 3 0 chr3 136071419 136073171 -81963987 + HERVK LTR ERVK 5533 7243 0 6636 64 12 0 chr3 136073171 136073947 -81963211 + LTR5 LTR ERVK 1 785 -184 411 304 19 34 chr3 136074163 136074370 -81962788 - MLT1K LTR MaLR -302 286 83 1102 107 0 0 chr3 136074548 136074688 -81962470 + AluSp/q SINE Alu 159 298 -15 1453 158 20 39 chr3 136074783 136074927 -81962231 + AluJo SINE Alu 1 139 -173 2011 167 0 0 chr3 136074927 136075227 -81961931 + AluSx SINE Alu 1 300 -12 1453 158 20 39 chr3 136075227 136075336 -81961822 + AluJo SINE Alu 139 249 -63 326 331 0 60 chr3 136075340 136075473 -81961685 - L1MC4 LINE L1 -1339 6703 6579 596 238 50 12 chr3 136075490 136075650 -81961508 + MER104 DNA Tc2 11 176 -4 1871 93 0 0 chr3 136076542 136076820 -81960338 + AluSx SINE Alu 60 337 0 1851 182 0 22 chr3 136076958 136077276 -81959882 + AluJo SINE Alu 1 311 -1 276 299 69 0 chr3 136077341 136077428 -81959730 - MIR SINE MIR -74 188 96 1589 167 0 16 chr3 136077448 136077700 -81959458 + AluJb SINE Alu 1 248 -64 2346 149 46 11 chr3 136077700 136078135 -81959023 + MER66B LTR ERV1 3 452 -34 4181 126 45 38 chr3 136078135 136079053 -81958105 + pTR5 LTR ERV1 742 1999 -439 350 271 9 0 chr3 136079053 136079160 -81957998 + LTR30 LTR ERV1 517 624 -98 1486 95 0 5 chr3 136079160 136079408 -81957750 + pTR5 LTR ERV1 49 397 -2041 1784 195 24 41 chr3 136079632 136079881 -81957277 + L1MB7 LINE L1 5670 5909 -275 333 0 0 0 chr3 136079881 136079918 -81957240 + (CA)n Simple_repeat Simple_repeat 2 38 0 1784 195 24 41 chr3 136079918 136080130 -81957028 + L1MB7 LINE L1 5909 6123 -61 1748 177 3 7 chr3 136080130 136080429 -81956729 - AluJb SINE Alu -14 298 1 959 143 0 0 chr3 136080552 136080685 -81956473 - FLAM_C SINE Alu -10 133 1 344 116 0 43 chr3 136080686 136080755 -81956403 + L1MB8 LINE L1 6112 6177 -1 1697 187 3 14 chr3 136080766 136080901 -81956257 + AluJb SINE Alu 1 136 -176 1935 108 66 28 chr3 136080901 136081189 -81955969 + AluSx SINE Alu 1 299 -13 1697 187 3 14 chr3 136081189 136081342 -81955816 + AluJb SINE Alu 136 286 -26 2279 87 0 7 chr3 136081479 136081790 -81955368 + AluSx SINE Alu 1 309 0 2118 127 7 10 chr3 136082405 136082713 -81954445 - AluSx SINE Alu 0 312 6 1462 167 52 75 chr3 136082914 136083220 -81953938 + AluJo SINE Alu 1 299 -13 632 228 114 46 chr3 136083383 136083602 -81953556 + MIR SINE MIR 29 262 0 1452 167 126 4 chr3 136084712 136084981 -81952177 + AluJo SINE Alu 1 302 0 549 162 86 8 chr3 136085718 136085835 -81951323 + MER45A DNA AcHobo 1 126 -52 1603 150 66 7 chr3 136085836 136086109 -81951049 + AluJo SINE Alu 1 289 -23 2299 117 0 0 chr3 136086116 136086425 -81950733 + AluSq SINE Alu 1 309 -4 1314 180 35 80 chr3 136086451 136086697 -81950461 - MLT1C LTR MaLR -45 422 199 2130 121 3 7 chr3 136086697 136086995 -81950163 - AluSx SINE Alu -15 297 1 1314 180 35 80 chr3 136086995 136087148 -81950010 - MLT1C LTR MaLR -268 199 41 1498 196 36 0 chr3 136087168 136087448 -81949710 - AluJo SINE Alu -22 290 1 2184 94 10 3 chr3 136088107 136088395 -81948763 + AluSc SINE Alu 1 290 -19 2417 80 6 6 chr3 136088489 136088800 -81948358 + AluSq SINE Alu 1 311 -2 365 280 88 50 chr3 136089852 136090034 -81947124 + L2 LINE L2 3122 3310 -3 212 251 6 103 chr3 136091019 136091194 -81945964 + C-rich Low_complexity Low_complexity 3 160 0 221 83 42 83 chr3 136092226 136092274 -81944884 - MIR SINE MIR -85 177 132 891 234 65 0 chr3 136092295 136092509 -81944649 + MIR SINE MIR 13 240 -22 743 231 93 55 chr3 136092530 136092635 -81944523 - L2 LINE L2 -1 3271 3171 183 80 0 0 chr3 136092635 136092660 -81944498 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 743 231 93 55 chr3 136092660 136093013 -81944145 - L2 LINE L2 -101 3171 2777 183 250 71 18 chr3 136092989 136093045 -81944113 - MIR SINE MIR -67 141 83 * 2163 128 0 0 chr3 136094455 136094752 -81942406 + AluSx SINE Alu 1 297 -15 342 267 179 19 chr3 136095701 136096019 -81941139 + LTR33A LTR ERVL 139 507 -16 2062 137 10 0 chr3 136096031 136096337 -81940821 - AluSx SINE Alu -3 309 1 729 157 50 8 chr3 136096835 136096956 -81940202 - FLAM_A SINE Alu -7 126 1 302 268 74 63 chr3 136097246 136097400 -81939758 + MIR SINE MIR 26 177 -68 2340 101 0 0 chr3 136097480 136097777 -81939381 + AluSq SINE Alu 4 300 -13 937 155 77 0 chr3 136097777 136097932 -81939226 + AluSg/x SINE Alu 134 300 -12 513 323 45 0 chr3 136097989 136098187 -81938971 - L1MD2 LINE L1 -351 6008 5802 295 199 153 38 chr3 136099921 136100052 -81937106 + MIR SINE MIR 9 154 -54 304 269 145 7 chr3 136100190 136100335 -81936823 - MIR SINE MIR -17 245 81 2095 136 3 0 chr3 136100608 136100916 -81936242 + AluJb SINE Alu 1 309 -3 761 227 27 8 chr3 136101136 136101396 -81935762 - L1M4c LINE L1 -5142 1242 978 671 209 99 0 chr3 136101502 136101703 -81935455 - L1M4 LINE L1 -797 5349 5129 314 175 38 50 chr3 136101703 136101783 -81935375 + Charlie5 DNA MER1_type 2501 2579 -33 275 212 51 82 chr3 136101788 136101847 -81935311 - L1MC5 LINE L1 -547 7495 7436 1521 154 77 15 chr3 136101847 136102119 -81935039 + AluJb SINE Alu 5 293 -19 275 212 51 82 chr3 136102119 136102340 -81934818 - L1MC5 LINE L1 -606 7436 7228 22 0 0 0 chr3 136102753 136102775 -81934383 + AT_rich Low_complexity Low_complexity 1 22 0 551 190 66 7 chr3 136103446 136103583 -81933575 + L1MB1 LINE L1 5012 5156 -990 592 225 22 7 chr3 136104108 136104246 -81932912 + L1MC4 LINE L1 6745 6884 -1158 * 4944 151 37 5 chr3 136104240 136105223 -81931935 + L1MB1 LINE L1 5146 6163 -5 4613 180 71 21 chr3 136105232 136106324 -81930834 + L1MC4 LINE L1 6859 8005 -37 2248 94 3 17 chr3 136106527 136106825 -81930333 + AluSp SINE Alu 1 294 -19 1373 144 48 0 chr3 136107747 136107997 -81929161 + L1MB3 LINE L1 5793 6054 -129 16428 124 19 101 chr3 136108024 136111624 -81925534 + L1P LINE L1 12 3314 -2832 1874 108 12 0 chr3 136111727 136111978 -81925180 - AluSq SINE Alu -59 254 1 831 235 40 0 chr3 136113760 136113960 -81923198 + MER58A DNA MER1_type 1 208 -16 432 90 179 0 chr3 136115191 136115258 -81921900 + MADE1 DNA Mariner 2 80 0 4031 254 103 3 chr3 136115414 136116827 -81920331 + L2 LINE L2 1746 3312 -1 2579 150 105 88 chr3 136117341 136117981 -81919177 - MLT1E1 LTR MaLR -3 651 1 411 271 178 0 chr3 136118346 136118464 -81918694 - MER91A DNA MER1_type 0 196 58 1072 190 4 35 chr3 136119041 136119267 -81917891 + MER20 DNA MER1_type 1 219 0 819 243 196 14 chr3 136119557 136119924 -81917234 + LTR33 LTR ERVL 87 520 -1 28 91 0 0 chr3 136123845 136123922 -81913236 + GC_rich Low_complexity Low_complexity 1 77 0 23 86 0 0 chr3 136123983 136124041 -81913117 + GC_rich Low_complexity Low_complexity 1 58 0 28 29 0 0 chr3 136124143 136124178 -81912980 + GC_rich Low_complexity Low_complexity 1 35 0 6928 45 32 1 chr3 136124442 136125338 -81911820 + L1PA7 LINE L1 5224 6146 -8 632 188 49 10 chr3 136125595 136125806 -81911352 + ORSL DNA AcHobo 1 275 0 197 277 48 84 chr3 136126086 136126169 -81910989 - MIR SINE MIR -90 172 93 338 256 40 32 chr3 136126238 136126363 -81910795 - L1ME4a LINE L1 0 6121 5996 311 200 67 22 chr3 136126521 136126611 -81910547 + L1ME4a LINE L1 5853 5946 -175 230 178 0 22 chr3 136127463 136127508 -81909650 - L2 LINE L2 -5 3308 3265 459 331 46 0 chr3 136127614 136127789 -81909369 + MIR SINE MIR 28 210 -52 2553 71 0 0 chr3 136128769 136129080 -81908078 + AluY SINE Alu 1 311 0 380 256 51 80 chr3 136129341 136129478 -81907680 + MIR3 SINE MIR 11 143 -65 466 270 196 0 chr3 136131153 136131301 -81905857 + MER5A DNA MER1_type 13 189 0 183 290 32 16 chr3 136131474 136131536 -81905622 + L2 LINE L2 3236 3298 -15 2115 191 40 52 chr3 136131616 136132120 -81905038 + MLT1D LTR MaLR 1 498 -7 362 299 142 81 chr3 136132177 136132847 -81904311 - L1ME4a LINE L1 -85 6036 5476 193 224 69 52 chr3 136133123 136133181 -81903977 + L2 LINE L2 2874 2932 -382 2564 227 39 39 chr3 136133212 136133747 -81903411 - L1ME1 LINE L1 -36 6130 5592 2154 120 0 0 chr3 136133747 136134059 -81903099 + AluSq SINE Alu 1 312 0 2564 227 39 39 chr3 136134059 136134296 -81902862 - L1ME1 LINE L1 -573 5593 5357 288 176 0 134 chr3 136134410 136134552 -81902606 + L1MC5 LINE L1 7638 7760 -201 275 288 106 45 chr3 136134683 136134815 -81902343 - MIR SINE MIR -75 187 48 804 287 24 0 chr3 136135029 136135238 -81901920 + MIR SINE MIR 6 219 -43 41268 35 21 2 chr3 136136191 136142222 -81894936 - L1PA2 LINE L1 -1 6154 2 605 268 39 25 chr3 136142858 136143086 -81894072 + L1ME1 LINE L1 5923 6162 -2 893 221 72 0 chr3 136144515 136144723 -81892435 + MER58A DNA MER1_type 1 223 -1 268 347 0 0 chr3 136144916 136144988 -81892170 + L2 LINE L2 3149 3220 -52 1964 133 35 0 chr3 136145819 136146105 -81891053 + AluSx SINE Alu 5 300 -12 381 320 10 0 chr3 136146592 136146692 -81890466 - L1M3d LINE L1 -5108 783 683 298 274 32 48 chr3 136146660 136146784 -81890374 - L1M3d LINE L1 -5721 251 130 * 186 311 93 53 chr3 136146785 136146936 -81890222 + L2 LINE L2 2898 3054 -259 183 80 0 0 chr3 136147038 136147063 -81890095 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 284 258 42 25 chr3 136147202 136147322 -81889836 - L1M3d LINE L1 -5769 122 1 596 317 67 26 chr3 136147324 136147889 -81889269 - HAL1 LINE L1 -758 1749 1162 356 210 126 25 chr3 136148773 136148892 -81888266 + L1MC3 LINE L1 6505 6635 -1150 * 1369 233 103 8 chr3 136148854 136149241 -81887917 - L1MD3 LINE L1 -952 7043 6620 367 260 58 0 chr3 136149238 136149342 -81887816 + L1MD3 LINE L1 7169 7278 -717 * 442 187 65 16 chr3 136149343 136149466 -81887692 + MLT1F1 LTR MaLR 3 131 -436 1286 231 166 3 chr3 136149469 136149855 -81887303 + L1MD3 LINE L1 7410 7858 -137 2605 139 44 2 chr3 136149861 136150270 -81886888 - MSTB LTR MaLR 0 426 1 7643 184 50 4 chr3 136150270 136151758 -81885400 - MSTB-int LTR MaLR 0 1651 95 1904 142 46 0 chr3 136151758 136152083 -81885075 - MSTB LTR MaLR -84 342 3 461 196 47 0 chr3 136152097 136152204 -81884954 + L1MD3 LINE L1 7874 7985 -10 825 264 106 50 chr3 136152373 136152809 -81884349 - LTR33 LTR ERVL -7 514 55 493 249 129 27 chr3 136153244 136153559 -81883599 + MER31B LTR ERV1 2 390 -76 220 360 136 4 chr3 136153747 136153983 -81883175 + L2 LINE L2 638 904 -2410 302 327 50 0 chr3 136154155 136154256 -81882902 + MER91B DNA MER1_type 75 180 -10 274 253 13 0 chr3 136155046 136155121 -81882037 + (TG)n Simple_repeat Simple_repeat 1 76 0 292 296 66 20 chr3 136156311 136156463 -81880695 + L2 LINE L2 2257 2415 -899 189 228 70 0 chr3 136157348 136157405 -81879753 - L2 LINE L2 0 3272 3212 21 57 0 0 chr3 136157793 136157828 -81879330 + AT_rich Low_complexity Low_complexity 1 35 0 196 333 39 0 chr3 136159455 136159533 -81877625 - MIR SINE MIR -13 249 169 2724 107 38 24 chr3 136161259 136161681 -81875477 - MSTC LTR MaLR 0 428 1 3377 243 94 25 chr3 136161681 136162785 -81874373 - MSTC-int LTR MaLR 0 1651 471 1556 125 102 60 chr3 136162802 136163137 -81874021 + MER4B LTR ERV1 2 350 -260 2534 57 7 0 chr3 136163164 136163464 -81873694 - AluY SINE Alu -9 302 1 1138 259 102 25 chr3 136163492 136163893 -81873265 - MER50 LTR ERV1 -277 457 26 419 246 127 0 chr3 136163889 136163999 -81873159 - MER50 LTR ERV1 -607 127 4 * 1634 123 57 13 chr3 136164003 136164304 -81872854 - LTR23 LTR ERV1 -38 399 86 437 286 152 6 chr3 136164304 136164475 -81872683 + MER50 LTR ERV1 491 686 -48 1872 146 177 9 chr3 136164603 136164953 -81872205 - MSTC LTR MaLR -19 409 1 398 279 182 9 chr3 136165613 136165943 -81871215 - LTR16B LTR ERVL -14 450 64 332 158 13 53 chr3 136166486 136166562 -81870596 + MIR3 SINE MIR 104 176 -32 192 323 138 23 chr3 136167076 136167206 -81869952 - L2 LINE L2 -1 3271 3127 253 197 49 0 chr3 136167395 136167456 -81869702 + L2 LINE L2 3188 3251 -21 709 215 156 42 chr3 136167784 136168072 -81869086 + MLT1A2 LTR MaLR 1 321 -53 2356 120 39 68 chr3 136169393 136169834 -81867324 + MSTA LTR MaLR 1 428 0 9999 162 22 2 chr3 136169834 136171453 -81865705 + MSTA-int LTR MaLR 1 1651 0 2482 151 42 2 chr3 136171455 136171865 -81865293 + MSTA LTR MaLR 3 428 0 487 289 102 19 chr3 136171892 136172158 -81865000 + L1MC/D LINE L1 4559 4846 -1300 259 115 64 26 chr3 136172344 136172422 -81864736 + (TATAA)n Simple_repeat Simple_repeat 4 84 0 221 57 57 19 chr3 136172526 136172579 -81864579 + (TA)n Simple_repeat Simple_repeat 2 56 0 355 288 34 34 chr3 136172624 136172770 -81864388 + L1MC/D LINE L1 5314 5459 -2349 226 330 22 11 chr3 136172801 136172892 -81864266 + L2 LINE L2 3181 3272 0 270 305 0 0 chr3 136172906 136173024 -81864134 + (TGGA)n Simple_repeat Simple_repeat 1 118 0 447 344 58 17 chr3 136174437 136174678 -81862480 - MER102b DNA MER1_type -3 338 88 2141 116 0 10 chr3 136175386 136175687 -81861471 - AluSx SINE Alu -14 298 1 181 352 133 43 chr3 136175923 136176156 -81861002 - L2 LINE L2 -5 3267 3014 588 280 122 30 chr3 136176521 136177008 -81860150 - L2 LINE L2 0 3272 2735 4515 219 105 31 chr3 136177123 136178486 -81858672 - L1MDa LINE L1 -4623 1917 265 2109 98 7 0 chr3 136178486 136178773 -81858385 - AluSx SINE Alu -23 289 1 4515 219 105 31 chr3 136178773 136179033 -81858125 - L1MDa LINE L1 -6275 265 26 552 259 149 45 chr3 136179705 136179994 -81857164 + L2 LINE L2 2995 3313 0 366 116 58 35 chr3 136180455 136180627 -81856531 + (CACAC)n Simple_repeat Simple_repeat 5 180 0 639 228 32 37 chr3 136182691 136182880 -81854278 + MER5A DNA MER1_type 1 188 -1 318 228 132 0 chr3 136183047 136183161 -81853997 - LTR33 LTR ERVL -13 508 380 1098 232 42 8 chr3 136183235 136183476 -81853682 - LTR33 LTR ERVL -272 249 1 294 300 100 42 chr3 136183477 136183597 -81853561 - L2 LINE L2 -35 3237 3111 450 321 105 0 chr3 136183646 136183855 -81853303 - MIR SINE MIR 0 262 32 7323 167 191 30 chr3 136183895 136185407 -81851751 - MER52A LTR ERV1 0 1755 1 1567 131 78 18 chr3 136185408 136185690 -81851468 - MER52A-int LTR ERV1 -1 5216 4918 1372 138 8 57 chr3 136185695 136185942 -81851216 - MER52A-int LTR ERV1 -1226 3991 3757 2141 49 0 0 chr3 136186888 136187153 -81850005 - L1PA6 LINE L1 -1 6153 5889 12400 88 9 2 chr3 136187155 136188878 -81848280 - L1P LINE L1 -865 5281 3547 758 245 72 46 chr3 136189004 136189241 -81847917 + MIR SINE MIR 20 262 0 1871 97 0 8 chr3 136190610 136190878 -81846280 - AluSx SINE Alu -46 266 1 541 206 221 47 chr3 136191164 136191508 -81845650 - L1ME4a LINE L1 -21 6100 5697 271 317 85 12 chr3 136191615 136191779 -81845379 - L2 LINE L2 -466 2848 2673 1053 201 148 30 chr3 136191779 136192083 -81845075 + MER58B DNA MER1_type 1 340 -1 331 301 97 0 chr3 136192304 136192417 -81844741 + LTR33 LTR ERVL 296 419 -102 242 346 42 65 chr3 136192521 136192905 -81844253 - L2 LINE L2 -710 2604 2230 464 269 65 21 chr3 136192993 136193179 -81843979 + L2 LINE L2 3120 3313 0 1271 196 68 56 chr3 136194555 136194877 -81842281 + LTR16C LTR ERVL 150 475 -16 447 208 229 31 chr3 136194932 136195124 -81842034 + MIR SINE MIR 32 261 -1 560 50 0 25 chr3 136195855 136195935 -81841223 + L1PA5 LINE L1 6077 6154 0 201 330 119 17 chr3 136196467 136196585 -81840573 + L2 LINE L2 3123 3252 -20 440 132 0 0 chr3 136196591 136196659 -81840499 + MER53 DNA DNA 122 189 0 195 113 19 132 chr3 136196663 136196716 -81840442 + L2 LINE L2 3267 3313 0 1374 161 121 11 chr3 136197298 136197571 -81839587 - AluSx SINE Alu -9 303 1 726 243 0 7 chr3 136197640 136197792 -81839366 - MER5A DNA MER1_type -9 180 30 213 175 0 0 chr3 136197834 136197874 -81839284 + CT-rich Low_complexity Low_complexity 4 43 0 37 52 0 0 chr3 136199285 136199343 -81837815 + AT_rich Low_complexity Low_complexity 1 58 0 186 43 0 0 chr3 136199682 136199705 -81837453 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1407 157 154 43 chr3 136199758 136200109 -81837049 + MLT1B LTR MaLR 1 390 0 24 32 0 0 chr3 136200184 136200215 -81836943 + AT_rich Low_complexity Low_complexity 1 31 0 1828 148 106 3 chr3 136200793 136201124 -81836034 - MLT1A1 LTR MaLR 0 365 1 276 307 13 0 chr3 136201380 136201455 -81835703 - MIR3 SINE MIR -5 203 128 206 354 62 44 chr3 136203757 136203870 -81833288 - MIR SINE MIR -62 146 32 624 226 19 13 chr3 136205317 136205476 -81831682 + FRAM SINE Alu 10 169 -7 246 280 130 20 chr3 136208464 136208564 -81828594 - L3 LINE CR1 -88 1489 1379 718 292 72 50 chr3 136209106 136209650 -81827508 + L1MEd LINE L1 27 582 -5537 294 70 0 0 chr3 136209806 136209849 -81827309 - LTR5 LTR ERVK -164 805 763 364 272 141 34 chr3 136210239 136210445 -81826713 + L2 LINE L2 3042 3269 -3 1108 231 23 23 chr3 136211602 136211858 -81825300 - MIR SINE MIR 0 262 7 253 313 125 34 chr3 136211924 136212132 -81825026 - MIR SINE MIR -10 252 26 1689 169 11 4 chr3 136212135 136212449 -81824709 - AluJb SINE Alu 0 316 1 1388 150 4 42 chr3 136413467 136413707 -81623451 + AluJb SINE Alu 82 312 0 244 261 340 7 chr3 136413865 136414018 -81623140 - MIR SINE MIR -20 242 39 2046 146 16 10 chr3 136414444 136414752 -81622406 + AluJo SINE Alu 1 310 -2 796 261 138 3 chr3 136414782 136415073 -81622085 - L3 LINE CR1 -3 1574 1245 313 254 166 68 chr3 136415102 136415307 -81621851 - L3 LINE CR1 -758 819 595 250 146 24 0 chr3 136415423 136415464 -81621694 + Tigger5 DNA MER2_type 2282 2323 0 1198 201 60 16 chr3 136415831 136416129 -81621029 - L1PA8A LINE L1 -384 5748 5461 550 245 94 21 chr3 136416294 136416486 -81620672 + MIR SINE MIR 6 211 -51 443 95 16 0 chr3 136417957 136418020 -81619138 + AluS SINE Alu 2 65 -248 548 189 47 31 chr3 136418083 136418210 -81618948 + L2 LINE L2 3139 3267 -5 25 31 0 0 chr3 136420216 136420248 -81616910 + AT_rich Low_complexity Low_complexity 1 32 0 2112 72 24 31 chr3 136420257 136420547 -81616611 + AluY SINE Alu 1 288 -23 619 275 24 36 chr3 136420711 136420962 -81616196 + L1MC4a LINE L1 5668 5915 -1893 1794 189 9 9 chr3 136420976 136421314 -81615844 - MER4D LTR ERV1 -10 893 556 339 142 35 41 chr3 136421314 136421425 -81615733 - MER4E LTR ERV1 -586 286 69 * 1676 135 40 7 chr3 136421409 136421706 -81615452 - MER49 LTR ERV1 -616 307 1 186 43 0 0 chr3 136423353 136423376 -81613782 + (TTA)n Simple_repeat Simple_repeat 2 24 0 373 216 98 29 chr3 136426629 136426731 -81610427 + MER91C DNA MER1_type 4 112 -28 1877 158 10 10 chr3 136426835 136427127 -81610031 + AluJo SINE Alu 3 294 -18 363 309 179 6 chr3 136427309 136427477 -81609681 - MIR SINE MIR 0 262 66 304 311 8 61 chr3 136427575 136427642 -81609516 + L1M LINE L1 5304 5362 -2446 2545 58 0 13 chr3 136427642 136427951 -81609207 + AluY SINE Alu 1 305 -6 304 311 8 61 chr3 136427951 136428015 -81609143 + L1M LINE L1 5362 5428 -2380 23 54 0 0 chr3 136428215 136428252 -81608906 + AT_rich Low_complexity Low_complexity 1 37 0 2551 61 0 0 chr3 136429141 136429436 -81607722 + AluSc SINE Alu 1 295 -14 1301 204 55 65 chr3 136429623 136430026 -81607132 + MER57A LTR ERV1 3 401 -2 2273 98 6 28 chr3 136430034 136430352 -81606806 - AluSx SINE Alu -1 311 1 232 193 96 48 chr3 136430401 136430484 -81606674 + MIR SINE MIR 174 260 -2 668 162 36 0 chr3 136430726 136430862 -81606296 + FLAM_C SINE Alu 2 141 0 296 234 78 13 chr3 136430935 136431012 -81606146 + L2 LINE L2 3212 3293 -20 338 325 88 50 chr3 136431034 136431274 -81605884 - MIR SINE MIR -13 249 1 1035 72 36 18 chr3 136431673 136431840 -81605318 + L1PA12 LINE L1 5997 6166 -2 7030 45 3 0 chr3 136431936 136432719 -81604439 + LTR5 LTR ERVK 1 785 -184 1870 98 16 0 chr3 136432769 136433042 -81604116 - AluSx SINE Alu 0 312 36 2492 90 0 0 chr3 136433191 136433502 -81603656 - AluY SINE Alu 0 311 1 1952 86 0 50 chr3 136433557 136433835 -81603323 - AluSx SINE Alu -2 310 47 1444 140 5 21 chr3 136433835 136433988 -81603170 - L1MC/D LINE L1 -541 5637 5483 2354 92 10 13 chr3 136433988 136434293 -81602865 - AluY SINE Alu -7 304 1 2293 112 16 3 chr3 136434293 136434598 -81602560 - AluSx SINE Alu -3 309 1 1444 140 5 21 chr3 136434598 136434714 -81602444 - L1MC/D LINE L1 -693 5485 5377 192 200 0 0 chr3 136434992 136435037 -81602121 + GA-rich Low_complexity Low_complexity 1 45 0 477 242 122 9 chr3 136435047 136435208 -81601950 + MIR3 SINE MIR 2 186 -22 202 284 0 59 chr3 136435264 136435366 -81601792 + L2 LINE L2 2914 3009 -263 263 192 0 0 chr3 136435370 136435422 -81601736 - L1MA9 LINE L1 0 6312 6261 750 180 73 0 chr3 136435453 136435603 -81601555 - AluJb SINE Alu -22 290 130 1331 152 22 52 chr3 136435761 136436030 -81601128 + MSTB LTR MaLR 166 426 0 540 207 0 0 chr3 136436033 136436149 -81601009 + L1 LINE L1 4670 4785 -1361 341 213 0 50 chr3 136436161 136436241 -81600917 + L1 LINE L1 5029 5104 -1042 268 216 70 87 chr3 136436262 136436335 -81600823 - L1MC5 LINE L1 -36 7925 7852 2188 129 0 3 chr3 136436335 136436630 -81600528 - AluSx SINE Alu -18 294 1 268 216 70 87 chr3 136436630 136436741 -81600417 - L1MC5 LINE L1 -109 7852 7744 3030 161 43 2 chr3 136436788 136437340 -81599818 - L1MB5 LINE L1 -12 6162 5588 736 293 98 37 chr3 136437648 136437685 -81599473 + MLT1K LTR MaLR 42 75 -513 3136 107 6 29 chr3 136437685 136438126 -81599032 + MER101 LTR ERV1 1 432 -42 1589 149 31 102 chr3 136438126 136438261 -81598897 + AluJo SINE Alu 1 144 -168 2557 86 0 3 chr3 136438261 136438574 -81598584 + AluSx SINE Alu 1 312 0 1589 149 31 102 chr3 136438574 136438760 -81598398 + AluJo SINE Alu 144 299 -13 3136 107 6 29 chr3 136438760 136438803 -81598355 + MER101 LTR ERV1 432 474 0 736 293 98 37 chr3 136438803 136439193 -81597965 + MLT1K LTR MaLR 75 567 -21 265 284 0 12 chr3 136439797 136439878 -81597280 + MER116 DNA Mariner 1 80 0 391 307 36 7 chr3 136440411 136440548 -81596610 + MIR SINE MIR 85 225 -37 377 279 86 0 chr3 136441501 136441641 -81595517 - Charlie2 DNA MER1_type -10 2852 2701 1101 197 71 44 chr3 136441672 136441966 -81595192 - AluJb SINE Alu 0 302 1 809 245 45 42 chr3 136441966 136442081 -81595077 - Charlie2 DNA MER1_type -147 2715 2602 2236 80 28 3 chr3 136442081 136442367 -81594791 - AluSq SINE Alu -20 293 1 2740 23 0 0 chr3 136442367 136442667 -81594491 - AluY SINE Alu -11 300 1 809 245 45 42 chr3 136442667 136442885 -81594273 - Charlie2 DNA MER1_type -259 2603 2380 606 201 107 20 chr3 136442889 136443038 -81594120 + FRAM SINE Alu 1 154 -22 1071 227 64 21 chr3 136443038 136443100 -81594058 - Charlie2 DNA MER1_type -493 2369 2311 1978 125 32 0 chr3 136443100 136443381 -81593777 - AluJb SINE Alu -22 290 1 1071 227 64 21 chr3 136443381 136443692 -81593466 - Charlie2 DNA MER1_type -551 2311 1980 241 222 37 25 chr3 136443699 136443780 -81593378 + L1MC5 LINE L1 7848 7929 -32 435 272 24 0 chr3 136443780 136443905 -81593253 - Charlie2 DNA MER1_type -870 1992 1865 929 191 23 0 chr3 136444338 136444511 -81592647 + FRAM SINE Alu 1 176 0 2548 38 3 0 chr3 136444541 136444833 -81592325 + AluY SINE Alu 1 293 -18 1008 252 70 24 chr3 136444848 136445221 -81591937 + L1MC4 LINE L1 7652 8041 -1 186 232 18 36 chr3 136445456 136445512 -81591646 - MIR3 SINE MIR -54 154 100 218 31 0 31 chr3 136445784 136445816 -81591342 + (TCCC)n Simple_repeat Simple_repeat 1 31 0 1523 263 109 28 chr3 136446680 136447198 -81589960 - L1ME1 LINE L1 0 6166 5579 2432 50 17 10 chr3 136447198 136447499 -81589659 - AluY SINE Alu -8 303 1 1523 263 109 28 chr3 136447499 136447657 -81589501 - L1ME1 LINE L1 -587 5579 5435 451 244 159 0 chr3 136448325 136448501 -81588657 - L2 LINE L2 -256 3057 2854 1034 114 0 0 chr3 136448526 136448666 -81588492 + AluJb SINE Alu 163 302 -10 633 175 6 62 chr3 136448668 136448828 -81588330 + MLT1B LTR MaLR 171 321 -69 365 187 27 0 chr3 136448849 136448924 -81588234 - MLT1B LTR MaLR -4 386 310 1392 136 34 75 chr3 136448924 136449189 -81587969 - AluJo SINE Alu -58 254 1 544 164 69 17 chr3 136449205 136449321 -81587837 - MLT1B LTR MaLR -268 122 1 186 122 61 61 chr3 136450524 136450573 -81586585 + L3 LINE CR1 1425 1473 -104 207 257 14 0 chr3 136451216 136451286 -81585872 + G-rich Low_complexity Low_complexity 4 74 0 391 209 87 70 chr3 136451325 136451497 -81585661 + L2 LINE L2 2909 3083 -189 269 263 38 0 chr3 136451821 136451901 -81585257 + MIR SINE MIR 77 159 -103 935 166 0 0 chr3 136452653 136452810 -81584348 - FRAM SINE Alu -9 157 1 329 244 77 0 chr3 136452817 136452895 -81584263 - L1ME4a LINE L1 -2 6119 6036 840 139 7 22 chr3 136452897 136453034 -81584124 + AluJo SINE Alu 1 135 -177 196 366 67 0 chr3 136453533 136453667 -81583491 - MIR3 SINE MIR -55 153 11 224 256 35 35 chr3 136455528 136455614 -81581544 - MIR SINE MIR -92 116 31 255 324 35 14 chr3 136456135 136456277 -81580881 - L2 LINE L2 -167 3105 2961 325 293 145 78 chr3 136457439 136457839 -81579319 + L2 LINE L2 2844 3270 -2 261 83 0 0 chr3 136457843 136457879 -81579279 + (GGGA)n Simple_repeat Simple_repeat 2 37 0 241 346 82 33 chr3 136458242 136458424 -81578734 - L2 LINE L2 -97 3175 2985 2365 82 7 0 chr3 136459216 136459521 -81577637 + AluSg SINE Alu 1 307 -3 777 212 92 0 chr3 136459521 136459716 -81577442 + MIR SINE MIR 41 259 -3 222 136 0 45 chr3 136459915 136459959 -81577199 - MIR SINE MIR -63 145 104 453 330 79 20 chr3 136460141 136460344 -81576814 - MIR SINE MIR 0 262 48 243 284 96 9 chr3 136460420 136460551 -81576607 + MIR SINE MIR 30 167 -70 211 319 44 62 chr3 136460778 136460891 -81576267 + MIR SINE MIR 103 213 -49 255 352 38 0 chr3 136461733 136461838 -81575320 + MIR3 SINE MIR 66 174 -34 226 294 64 2 chr3 136462040 136462140 -81575018 - MIR SINE MIR -60 148 45 211 339 8 74 chr3 136462188 136462258 -81574900 + MIR3 SINE MIR 80 127 -81 3306 52 5 0 chr3 136462258 136462666 -81574492 + L1PA5 LINE L1 5742 6151 -3 211 339 8 74 chr3 136462666 136462716 -81574442 + MIR3 SINE MIR 127 179 -29 995 248 84 9 chr3 136463204 136463527 -81573631 + MER113 DNA MER1_type? 64 410 -111 197 274 32 0 chr3 136463726 136463788 -81573370 - L2 LINE L2 0 3313 3250 199 129 0 0 chr3 136463892 136463923 -81573235 + MIR SINE MIR 114 144 -118 482 234 70 51 chr3 136464152 136464310 -81572848 - MIR SINE MIR -22 240 80 347 318 11 17 chr3 136464514 136464578 -81572580 + GA-rich Low_complexity Low_complexity 3 66 -114 236 71 48 0 chr3 136464578 136464620 -81572538 + (CAGAGA)n Simple_repeat Simple_repeat 3 46 0 347 318 11 17 chr3 136464620 136464734 -81572424 + GA-rich Low_complexity Low_complexity 66 180 0 536 291 41 12 chr3 136465269 136465441 -81571717 + MIR SINE MIR 53 229 -33 348 280 6 46 chr3 136465915 136466090 -81571068 + GA-rich Low_complexity Low_complexity 2 169 0 245 305 0 0 chr3 136466206 136466288 -81570870 + GA-rich Low_complexity Low_complexity 1 82 0 256 211 12 87 chr3 136466344 136466519 -81570639 + G-rich Low_complexity Low_complexity 1 183 -62 199 0 65 0 chr3 136466519 136466550 -81570608 + (CCCCCG)n Simple_repeat Simple_repeat 1 33 0 256 211 12 87 chr3 136466550 136466609 -81570549 + G-rich Low_complexity Low_complexity 183 245 0 26 82 0 0 chr3 136466621 136466682 -81570476 + GC_rich Low_complexity Low_complexity 1 61 0 23 0 0 0 chr3 136466841 136466864 -81570294 + GC_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 136467213 136467236 -81569922 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 136467316 136467337 -81569821 + GC_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 136467758 136467782 -81569376 + GC_rich Low_complexity Low_complexity 1 24 0 357 75 0 0 chr3 136468045 136468098 -81569060 + (CGG)n Simple_repeat Simple_repeat 2 54 0 251 236 69 14 chr3 136468731 136468803 -81568355 - L2 LINE L2 0 3272 3197 * 844 266 62 0 chr3 136468801 136469027 -81568131 - MIR SINE MIR -21 241 2 976 261 37 12 chr3 136470364 136470605 -81566553 + MIR SINE MIR 16 262 0 199 284 258 22 chr3 136470731 136471167 -81565991 - L2 LINE L2 -10 3262 2714 329 278 11 11 chr3 136471173 136471263 -81565895 + MIR SINE MIR 115 204 -58 315 271 65 28 chr3 136471391 136471498 -81565660 - L2 LINE L2 0 3313 3203 324 235 88 10 chr3 136472808 136472910 -81564248 + MIR SINE MIR 79 188 -74 22 35 0 0 chr3 136472957 136472986 -81564172 + AT_rich Low_complexity Low_complexity 1 29 0 499 253 91 40 chr3 136473303 136473501 -81563657 - MIR SINE MIR 0 262 55 371 262 93 0 chr3 136473934 136474041 -81563117 + MIR SINE MIR 28 144 -118 504 317 88 15 chr3 136474389 136474594 -81562564 - MIR SINE MIR -18 244 25 220 179 0 0 chr3 136474663 136474702 -81562456 - MIR SINE MIR -118 144 106 221 295 93 41 chr3 136475008 136475352 -81561806 - L2 LINE L2 -157 3115 2680 194 286 0 0 chr3 136475421 136475463 -81561695 + MIR3 SINE MIR 148 189 -19 661 260 77 19 chr3 136476123 136476331 -81560827 + MIR SINE MIR 14 233 -29 398 237 160 17 chr3 136477199 136477375 -81559783 - MIR SINE MIR -10 252 48 212 71 0 0 chr3 136477376 136477404 -81559754 + MIR SINE MIR 117 144 -118 327 49 0 0 chr3 136477414 136477455 -81559703 + (TG)n Simple_repeat Simple_repeat 1 41 0 959 163 125 17 chr3 136478496 136478736 -81558422 - L1MD3 LINE L1 0 7995 7730 826 191 26 0 chr3 136478870 136479022 -81558136 - FRAM SINE Alu -9 167 12 30 0 0 0 chr3 136480628 136480658 -81556500 + AT_rich Low_complexity Low_complexity 1 30 0 731 281 104 27 chr3 136481262 136481628 -81555530 - L2 LINE L2 -337 2977 2584 436 283 33 44 chr3 136481747 136481805 -81555353 - MIR SINE MIR 0 262 205 1740 60 0 5 chr3 136481805 136482021 -81555137 - 7SLRNA srpRNA srpRNA -105 215 1 436 283 33 44 chr3 136482021 136482142 -81555016 - MIR SINE MIR -57 205 85 278 271 238 39 chr3 136482524 136482705 -81554453 + MIR SINE MIR 46 262 0 346 257 18 46 chr3 136484281 136484390 -81552768 + MIR SINE MIR 28 133 -129 281 306 56 9 chr3 136484881 136484989 -81552169 + MIR SINE MIR 32 144 -118 397 343 96 0 chr3 136485026 136485192 -81551966 - MIR SINE MIR -12 250 69 259 286 48 12 chr3 136485270 136485354 -81551804 + L2 LINE L2 3185 3271 -1 262 362 8 8 chr3 136486013 136486140 -81551018 + MIR SINE MIR 18 144 -118 259 241 75 65 chr3 136486216 136486354 -81550804 - MIR SINE MIR -39 169 27 315 289 44 30 chr3 136486827 136486962 -81550196 + L2 LINE L2 2915 3051 -221 847 282 35 4 chr3 136487549 136487776 -81549382 - MIR SINE MIR -1 261 28 675 215 346 0 chr3 136488199 136488649 -81548509 - L2 LINE L2 -1 3312 2718 313 305 76 8 chr3 136489503 136489621 -81547537 - L3 LINE CR1 -103 1474 1349 347 358 68 6 chr3 136489845 136490007 -81547151 - L1ME4a LINE L1 -236 5885 5714 266 301 96 15 chr3 136490021 136490157 -81547001 - L1ME4a LINE L1 -444 5677 5531 218 360 11 22 chr3 136490213 136490302 -81546856 - MIR SINE MIR -101 107 20 228 245 128 21 chr3 136491551 136491645 -81545513 - L2 LINE L2 -16 3256 3153 533 258 119 0 chr3 136491659 136491810 -81545348 + MIR SINE MIR 78 246 -16 192 273 136 23 chr3 136491891 136491979 -81545179 - L2 LINE L2 -221 3051 2954 611 251 29 23 chr3 136493237 136493408 -81543750 + MIR SINE MIR 88 259 -3 301 153 28 0 chr3 136494152 136494224 -81542934 + CT-rich Low_complexity Low_complexity 1 74 0 205 338 50 0 chr3 136494521 136494601 -81542557 - MIR3 SINE MIR -14 194 111 210 280 80 0 chr3 136494684 136494759 -81542399 + MIR SINE MIR 92 172 -90 373 257 95 34 chr3 136495461 136495609 -81541549 - MIR3 SINE MIR -35 173 17 403 299 192 9 chr3 136496555 136496764 -81540394 - MIR SINE MIR 0 262 15 267 297 66 38 chr3 136496978 136497190 -81539968 - L2 LINE L2 -219 3053 2836 303 355 76 0 chr3 136498515 136498687 -81538471 + MIR SINE MIR 46 230 -32 244 204 54 86 chr3 136499155 136499248 -81537910 - L2 LINE L2 -70 3243 3154 292 211 9 13 chr3 136500865 136500945 -81536213 + MIR SINE MIR 74 141 -67 302 278 33 53 chr3 136502632 136502783 -81534375 - MIR SINE MIR -29 233 86 343 323 185 0 chr3 136502926 136503121 -81534037 - L3 LINE CR1 -113 1464 1234 666 298 41 23 chr3 136503165 136503383 -81533775 - MIR SINE MIR 0 262 41 3405 183 24 35 chr3 136503883 136504522 -81532636 + L1MB8 LINE L1 5474 6106 -72 2037 148 7 0 chr3 136504522 136504827 -81532331 + AluJb SINE Alu 1 307 -5 3405 183 24 35 chr3 136504827 136504894 -81532264 + L1MB8 LINE L1 6106 6172 -6 456 238 121 90 chr3 136504896 136505119 -81532039 - L1ME4a LINE L1 -11 6110 5881 361 184 88 26 chr3 136505124 136505238 -81531920 - L1ME4a LINE L1 -5 6116 5996 232 32 0 0 chr3 136505285 136505316 -81531842 - U7 snRNA snRNA -31 32 2 248 282 122 30 chr3 136506345 136506476 -81530682 + L2 LINE L2 2642 2784 -530 215 224 0 20 chr3 136506961 136507010 -81530148 + L3 LINE CR1 1416 1463 -114 248 263 21 63 chr3 136507204 136507299 -81529859 + L3 LINE CR1 1396 1486 -91 377 278 133 52 chr3 136508339 136508684 -81528474 - L2 LINE L2 -82 3190 2818 864 116 0 36 chr3 136508869 136509007 -81528151 - FLAM_C SINE Alu -10 133 1 371 255 29 0 chr3 136509008 136509110 -81528048 + MIR SINE MIR 42 146 -62 242 206 113 31 chr3 136509430 136509527 -81527631 + MER113 DNA MER1_type? 27 131 -390 526 335 34 0 chr3 136509753 136509929 -81527229 + MIR SINE MIR 12 193 -69 1967 142 10 0 chr3 136510844 136511140 -81526018 - AluJo SINE Alu -13 299 1 309 268 14 0 chr3 136511302 136511373 -81525785 - MIR SINE MIR -59 149 78 248 234 0 13 chr3 136512344 136512421 -81524737 + CT-rich Low_complexity Low_complexity 1 76 0 266 180 6 75 chr3 136512440 136512601 -81524557 + (TCTCTG)n Simple_repeat Simple_repeat 2 151 0 240 263 53 32 chr3 136513287 136513382 -81523776 - MIR SINE MIR -82 126 30 476 271 13 32 chr3 136513799 136513954 -81523204 + MIR SINE MIR 5 156 -106 379 292 107 17 chr3 136513971 136514149 -81523009 - MIR SINE MIR -33 229 36 212 208 13 39 chr3 136515433 136515510 -81521648 - L2 LINE L2 -285 2987 2913 314 315 34 20 chr3 136518484 136518630 -81518528 - MIR SINE MIR -86 176 29 263 291 43 17 chr3 136519425 136519542 -81517616 - L1ME4a LINE L1 -205 5916 5797 526 332 79 15 chr3 136520305 136520674 -81516484 + L2 LINE L2 2398 2845 -469 1111 286 101 30 chr3 136520703 136521178 -81515980 - MLT1G1 LTR MaLR -10 585 77 452 302 27 7 chr3 136521197 136521346 -81515812 + L2 LINE L2 2830 2981 -332 190 325 117 8 chr3 136521611 136521731 -81515427 + L2 LINE L2 2957 3089 -183 196 281 35 0 chr3 136521808 136521865 -81515293 + L2 LINE L2 3214 3272 0 268 274 138 56 chr3 136522269 136522393 -81514765 + MIR SINE MIR 22 154 -62 451 278 78 39 chr3 136522690 136522870 -81514288 + MIR SINE MIR 25 211 -51 1317 179 9 0 chr3 136522955 136523184 -81513974 - AluJb SINE Alu -16 296 66 244 304 22 94 chr3 136523296 136523396 -81513762 + L2 LINE L2 2816 2899 -373 2094 136 0 0 chr3 136523396 136523698 -81513460 - AluSx SINE Alu -10 302 1 244 304 22 94 chr3 136523698 136523778 -81513380 + L2 LINE L2 2899 2983 -289 221 296 83 0 chr3 136525536 136525644 -81511514 - L2 LINE L2 -229 3043 2927 2136 110 7 0 chr3 136526153 136526452 -81510706 - AluSg SINE Alu -9 301 1 780 259 120 41 chr3 136526567 136527026 -81510132 + L1MC5 LINE L1 7413 7907 -54 1657 179 38 3 chr3 136527027 136527201 -81509957 - AluJb SINE Alu -11 301 112 486 49 0 0 chr3 136527201 136527262 -81509896 + (TTA)n Simple_repeat Simple_repeat 2 62 0 1657 179 38 3 chr3 136527262 136527378 -81509780 - AluJb SINE Alu -200 112 1 2806 155 70 18 chr3 136527392 136527939 -81509219 + L1MB7 LINE L1 5602 6176 -8 1287 167 0 5 chr3 136528100 136528310 -81508848 + AluJb SINE Alu 90 298 -14 228 267 32 16 chr3 136528498 136528589 -81508569 + MIR3 SINE MIR 90 183 -25 354 286 103 60 chr3 136529042 136529391 -81507767 + L2 LINE L2 2722 3116 -156 420 315 73 73 chr3 136529409 136529641 -81507517 + L2 LINE L2 2979 3210 -62 204 130 74 0 chr3 136529908 136529962 -81507196 + (TGGG)n Simple_repeat Simple_repeat 3 60 0 306 283 38 9 chr3 136530341 136530447 -81506711 + MIR3 SINE MIR 58 166 -42 230 322 35 29 chr3 136530776 136530947 -81506211 + L1MC/D LINE L1 5309 5480 -879 2121 110 3 0 chr3 136531033 136531360 -81505798 + AluSq SINE Alu 6 333 0 1985 151 0 16 chr3 136531388 136531705 -81505453 + AluJb SINE Alu 1 312 0 557 354 102 0 chr3 136531706 136532070 -81505088 + L1ME3 LINE L1 5429 5829 -333 231 36 0 0 chr3 136532114 136532142 -81505016 + (TG)n Simple_repeat Simple_repeat 1 28 0 28 29 0 0 chr3 136532157 136532192 -81504966 + AT_rich Low_complexity Low_complexity 1 35 0 230 298 117 0 chr3 136532383 136532477 -81504681 + L2 LINE L2 2687 2791 -523 431 238 176 60 chr3 136532582 136532660 -81504498 + MLT1H LTR MaLR 1 69 -480 1725 157 33 10 chr3 136532660 136532843 -81504315 - AluJo SINE Alu -5 307 113 672 102 0 0 chr3 136532843 136532941 -81504217 + (TA)n Simple_repeat Simple_repeat 2 99 0 1725 157 33 10 chr3 136532941 136533057 -81504101 - AluJo SINE Alu -199 113 1 431 238 176 60 chr3 136533057 136533419 -81503739 + MLT1H LTR MaLR 69 549 0 621 301 43 37 chr3 136533435 136533734 -81503424 + L2 LINE L2 2950 3250 -22 2170 137 0 3 chr3 136534508 136534821 -81502337 + AluSx SINE Alu 1 312 0 338 105 0 18 chr3 136534821 136534878 -81502280 + (GGGA)n Simple_repeat Simple_repeat 1 56 0 817 311 48 26 chr3 136534893 136535356 -81501802 - MLT1J LTR MaLR -38 473 1 333 297 135 14 chr3 136535458 136535606 -81501552 - MIR SINE MIR -6 256 91 1659 193 4 0 chr3 136535607 136536045 -81501113 + AluJo SINE Alu 3 441 0 351 250 171 23 chr3 136536763 136536939 -81500219 + MLT1K LTR MaLR 3 204 -384 919 24 81 0 chr3 136536954 136537078 -81500080 - MER85 DNA T2_type -5 134 1 406 241 71 9 chr3 136537151 136537263 -81499895 + MLT1K LTR MaLR 468 586 -2 190 371 83 23 chr3 136537491 136537561 -81499597 - MIR SINE MIR -27 235 171 2127 104 0 0 chr3 136537561 136537901 -81499257 - AluSg SINE Alu 0 340 1 190 371 83 23 chr3 136537901 136537961 -81499197 - MIR SINE MIR -91 171 96 230 384 5 49 chr3 136538977 136539162 -81497996 - MIR SINE MIR 0 262 86 247 290 0 0 chr3 136539242 136539304 -81497854 - L2 LINE L2 -1 3312 3251 27 29 0 0 chr3 136539476 136539510 -81497648 + AT_rich Low_complexity Low_complexity 1 34 0 436 288 96 20 chr3 136539981 136540127 -81497031 - MIR SINE MIR -44 218 62 470 229 79 21 chr3 136540315 136540455 -81496703 - MER5A DNA MER1_type -6 183 36 518 0 16 0 chr3 136542780 136542842 -81494316 + (TG)n Simple_repeat Simple_repeat 2 64 0 248 254 15 0 chr3 136543088 136543155 -81494003 + MER94 DNA DNA 2 69 -65 273 342 108 0 chr3 136543409 136543529 -81493629 + MIR3 SINE MIR 13 145 -63 181 340 97 0 chr3 136543766 136543869 -81493289 + L2 LINE L2 3134 3246 -26 216 327 19 48 chr3 136543911 136544015 -81493143 + MIR SINE MIR 45 145 -63 371 289 26 40 chr3 136546022 136546174 -81490984 - L2 LINE L2 -5 3308 3159 335 339 17 8 chr3 136546763 136546881 -81490277 + L2 LINE L2 3122 3240 -32 376 165 153 0 chr3 136546889 136546974 -81490184 + L2 LINE L2 3216 3313 0 1794 122 55 0 chr3 136547145 136547416 -81489742 - AluJo SINE Alu -26 286 1 377 252 86 66 chr3 136547460 136547611 -81489547 - MIR3 SINE MIR -5 203 50 189 267 178 10 chr3 136547792 136547893 -81489265 + MIR3 SINE MIR 15 132 -76 377 200 11 33 chr3 136548107 136548197 -81488961 + MIR SINE MIR 114 201 -61 261 221 15 15 chr3 136548219 136548287 -81488871 + L2 LINE L2 2995 3062 -251 2026 143 0 0 chr3 136548317 136548603 -81488555 - AluSx SINE Alu -26 286 1 1491 158 6 88 chr3 136548605 136548922 -81488236 - AluJo SINE Alu -21 291 1 985 132 17 35 chr3 136548993 136549167 -81487991 - AluJo SINE Alu -23 289 119 282 237 171 0 chr3 136549202 136549278 -81487880 + L2 LINE L2 3224 3312 -1 270 81 0 0 chr3 136549647 136549684 -81487474 + (TCC)n Simple_repeat Simple_repeat 3 39 0 255 322 129 50 chr3 136549843 136550045 -81487113 - L2 LINE L2 -16 3256 3039 764 149 9 0 chr3 136550563 136550677 -81486481 - AluJo SINE Alu -187 115 1 827 138 7 36 chr3 136550748 136550886 -81486272 - FRAM SINE Alu -23 153 20 236 341 35 35 chr3 136555091 136555264 -81481894 + MLT1K LTR MaLR 251 423 -165 336 173 0 27 chr3 136556046 136556156 -81481002 + (TG)n Simple_repeat Simple_repeat 2 108 0 198 0 0 0 chr3 136556289 136556311 -81480847 + (TG)n Simple_repeat Simple_repeat 1 22 0 370 243 5 53 chr3 136556345 136556534 -81480624 + (TG)n Simple_repeat Simple_repeat 1 180 0 270 0 0 0 chr3 136556624 136556654 -81480504 + (TG)n Simple_repeat Simple_repeat 1 30 0 305 255 0 35 chr3 136556665 136556806 -81480352 + (TG)n Simple_repeat Simple_repeat 1 136 0 264 287 6 33 chr3 136556846 136557027 -81480131 + (TG)n Simple_repeat Simple_repeat 1 176 0 198 0 0 0 chr3 136557040 136557062 -81480096 + (TG)n Simple_repeat Simple_repeat 1 22 0 323 276 11 28 chr3 136557117 136557298 -81479860 + (TG)n Simple_repeat Simple_repeat 1 178 0 245 153 0 17 chr3 136557311 136557370 -81479788 + (TG)n Simple_repeat Simple_repeat 1 58 0 340 309 251 5 chr3 136558144 136558335 -81478823 - MIR SINE MIR -8 254 17 181 299 159 9 chr3 136560304 136560411 -81476747 + L2 LINE L2 2932 3054 -218 526 296 100 30 chr3 136561147 136561377 -81475781 - MIR SINE MIR -15 247 2 448 254 273 31 chr3 136562205 136562560 -81474598 + L2 LINE L2 2832 3272 0 877 160 32 6 chr3 136563123 136563279 -81473879 + FRAM SINE Alu 1 160 -16 525 238 95 0 chr3 136563368 136563494 -81473664 - MIR SINE MIR -26 236 99 190 365 0 0 chr3 136563583 136563635 -81473523 + MIR SINE MIR 16 67 -195 7887 90 44 0 chr3 136563635 136564831 -81472327 + HSMAR1 DNA Mariner 39 1287 0 509 233 48 34 chr3 136564842 136564988 -81472170 + MIR SINE MIR 107 254 -8 374 324 87 6 chr3 136565082 136565255 -81471903 - MIR3 SINE MIR 0 208 22 22 0 0 0 chr3 136566477 136566499 -81470659 + AT_rich Low_complexity Low_complexity 1 22 0 266 304 29 51 chr3 136567341 136567479 -81469679 - MIR SINE MIR -50 212 78 214 235 73 29 chr3 136567606 136567674 -81469484 - L2 LINE L2 -9 3304 3234 213 308 47 37 chr3 136568077 136568184 -81468974 + MIR3 SINE MIR 9 116 -92 678 259 0 49 chr3 136568484 136568669 -81468489 + MIR SINE MIR 45 220 -42 308 259 36 27 chr3 136570154 136570266 -81466892 + L2 LINE L2 3160 3272 0 248 314 59 25 chr3 136570665 136570783 -81466375 + L2 LINE L2 3151 3272 0 309 353 54 24 chr3 136570889 136571056 -81466102 - MIR SINE MIR -1 261 90 374 321 96 11 chr3 136572844 136573049 -81464109 + MIR SINE MIR 41 261 -1 1679 151 53 3 chr3 136576064 136576349 -81460809 - AluJb SINE Alu -13 299 1 309 328 167 11 chr3 136578400 136578586 -81458572 - MIR SINE MIR -16 246 32 198 0 0 0 chr3 136578638 136578660 -81458498 + (CA)n Simple_repeat Simple_repeat 2 23 0 777 211 0 0 chr3 136579000 136579133 -81458025 + FLAM_C SINE Alu 1 133 0 451 352 46 15 chr3 136579738 136579934 -81457224 + MIR SINE MIR 21 222 -40 212 341 61 0 chr3 136579978 136580060 -81457098 + L2 LINE L2 3184 3270 -2 1773 177 6 3 chr3 136580228 136580539 -81456619 + AluJb SINE Alu 1 312 0 230 264 132 28 chr3 136580844 136580950 -81456208 - MIR SINE MIR -68 194 78 813 156 0 50 chr3 136583183 136583324 -81453834 + AluJo SINE Alu 1 134 -178 2409 63 0 3 chr3 136583486 136583789 -81453369 - AluY SINE Alu -9 302 1 302 294 76 30 chr3 136583923 136584102 -81453056 - MIR SINE MIR -43 219 29 225 274 16 16 chr3 136584565 136584627 -81452531 - MIR SINE MIR 0 262 201 218 193 41 21 chr3 136584577 136584636 -81452522 - L2 LINE L2 -18 3294 3210 * 413 295 108 12 chr3 136584683 136584849 -81452309 - MIR SINE MIR -54 208 27 257 302 59 59 chr3 136585264 136585486 -81451672 + L2 LINE L2 2843 3064 -208 205 204 130 0 chr3 136585687 136585741 -81451417 - MIR SINE MIR -62 146 86 329 297 65 7 chr3 136585884 136586022 -81451136 - MIR SINE MIR -82 180 35 215 300 22 33 chr3 136586444 136586534 -81450624 + MIR SINE MIR 24 112 -150 180 312 159 12 chr3 136586633 136586803 -81450355 + L2 LINE L2 2863 3057 -215 368 273 73 20 chr3 136586928 136587078 -81450080 - MIR3 SINE MIR -9 199 42 184 304 0 18 chr3 136587903 136587959 -81449199 - L2 LINE L2 -8 3264 3210 457 304 62 19 chr3 136588043 136588303 -81448855 + L1MD1 LINE L1 5540 5810 -311 805 191 33 75 chr3 136588313 136588554 -81448604 + L1MD1 LINE L1 5991 6221 -21 245 327 17 7 chr3 136589438 136589561 -81447597 - MIR SINE MIR -77 131 6 458 281 111 24 chr3 136590468 136590699 -81446459 - MIR SINE MIR -6 256 4 988 171 6 6 chr3 136592272 136592436 -81444722 - FAM SINE Alu -9 166 3 185 0 40 0 chr3 136592451 136592476 -81444682 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 395 291 99 7 chr3 136592519 136592660 -81444498 - MIR SINE MIR -87 175 22 1628 136 16 63 chr3 136593889 136594206 -81442952 - AluJo SINE Alu -10 302 1 1221 196 63 49 chr3 136594598 136594884 -81442274 + AluJb SINE Alu 1 290 -12 28 29 0 0 chr3 136594884 136594919 -81442239 + AT_rich Low_complexity Low_complexity 1 35 0 1021 161 0 42 chr3 136597509 136597683 -81439475 - AluJo SINE Alu -8 304 137 1760 161 0 0 chr3 136597683 136597975 -81439183 - AluJb SINE Alu -20 292 1 1021 161 0 42 chr3 136597975 136597992 -81439166 - AluJo SINE Alu -175 137 121 647 128 36 5 chr3 136597993 136598185 -81438973 - L1M4 LINE L1 -572 5612 5369 1188 201 25 40 chr3 136598194 136598472 -81438686 - AluJo SINE Alu -38 274 1 551 144 20 2 chr3 136598482 136598590 -81438568 - L1M4 LINE L1 -867 5279 5172 781 226 54 25 chr3 136599364 136599568 -81437590 + L1ME LINE L1 10 219 -5851 1497 242 83 61 chr3 136599588 136600035 -81437123 + L1ME LINE L1 291 726 -5500 1227 206 27 7 chr3 136600035 136600327 -81436831 - AluJo SINE Alu -14 298 1 1497 242 83 61 chr3 136600327 136600781 -81436377 + L1ME LINE L1 726 1244 -4982 1549 181 3 42 chr3 136600881 136601190 -81435968 + AluJo SINE Alu 1 297 -15 1014 230 62 0 chr3 136601258 136601484 -81435674 + MIR SINE MIR 23 262 0 280 250 0 31 chr3 136601861 136601925 -81435233 + L2 LINE L2 3246 3307 -6 2085 109 3 10 chr3 136602473 136602776 -81434382 + AluSx SINE Alu 1 301 -11 2313 62 0 7 chr3 136602781 136603072 -81434086 + AluY SINE Alu 1 289 -22 279 0 0 0 chr3 136603076 136603107 -81434051 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 292 351 56 63 chr3 136603153 136603563 -81433595 + L2 LINE L2 2865 3271 -1 852 271 8 34 chr3 136603590 136603826 -81433332 + MIR SINE MIR 18 247 -15 1992 120 3 3 chr3 136604709 136605001 -81432157 + AluSx SINE Alu 8 299 -13 596 243 171 29 chr3 136605783 136606092 -81431066 + L1ME4a LINE L1 5731 6083 -38 2103 132 0 3 chr3 136606543 136606853 -81430305 + AluSx SINE Alu 1 309 -3 2029 88 0 111 chr3 136607237 136607407 -81429751 + AluSx SINE Alu 1 116 -196 2722 7 0 0 chr3 136607407 136607709 -81429449 + AluYb8 SINE Alu 4 305 -13 2029 88 0 111 chr3 136607709 136607881 -81429277 + AluSx SINE Alu 116 305 -7 487 195 16 0 chr3 136608174 136608297 -81428861 + (CA)n Simple_repeat Simple_repeat 1 125 0 213 286 63 16 chr3 136609072 136609135 -81428023 + L2 LINE L2 3243 3308 -5 718 307 35 26 chr3 136609163 136609394 -81427764 - MIR SINE MIR 0 262 30 1375 184 106 16 chr3 136609822 136610143 -81427015 + L1MD2 LINE L1 5795 6144 -215 543 279 14 0 chr3 136610144 136610291 -81426867 + L1MD2 LINE L1 6195 6343 -16 580 243 144 50 chr3 136610805 136611027 -81426131 + MIR SINE MIR 13 255 -7 22 0 0 0 chr3 136611029 136611051 -81426107 + AT_rich Low_complexity Low_complexity 1 22 0 249 276 98 57 chr3 136611058 136611181 -81425977 + L2 LINE L2 3143 3270 -2 220 258 22 67 chr3 136611228 136611317 -81425841 - MIR SINE MIR -70 192 108 181 204 0 23 chr3 136611691 136611735 -81425423 - L2 LINE L2 -205 3067 3025 405 183 43 43 chr3 136612314 136612407 -81424751 - FLAM_C SINE Alu -8 125 33 1018 98 0 0 chr3 136612642 136612785 -81424373 + L1MB2 LINE L1 5683 5825 -358 475 179 0 0 chr3 136612785 136612863 -81424295 + AluJ/FLAM SINE Alu 1 78 -234 21 0 0 0 chr3 136612883 136612904 -81424254 + AT_rich Low_complexity Low_complexity 1 21 0 262 29 0 0 chr3 136612908 136612942 -81424216 + L1MB2 LINE L1 5814 5847 -336 1823 190 8 3 chr3 136612943 136613295 -81423863 + L1MB2 LINE L1 5818 6171 0 1174 196 68 38 chr3 136613295 136613561 -81423597 + AluJb SINE Alu 1 274 -38 1092 88 18 0 chr3 136613565 136613736 -81423422 + (GGAA)n Simple_repeat Simple_repeat 3 176 0 397 393 56 43 chr3 136613739 136613817 -81423341 - L2 LINE L2 -13 3259 3184 1736 70 0 0 chr3 136613817 136614055 -81423103 + AluY SINE Alu 68 305 0 397 393 56 43 chr3 136614055 136614278 -81422880 - L2 LINE L2 -88 3184 2953 225 309 0 36 chr3 136614417 136614501 -81422657 + MIR SINE MIR 182 262 0 708 282 109 38 chr3 136614926 136615149 -81422009 - L2 LINE L2 -3 3310 3104 1323 132 81 33 chr3 136615149 136615301 -81421857 - L1MA7 LINE L1 0 6291 6119 2271 72 3 13 chr3 136615301 136615606 -81421552 + AluY SINE Alu 1 302 -9 1323 132 81 33 chr3 136615606 136615726 -81421432 - L1MA7 LINE L1 -172 6119 6006 708 282 109 38 chr3 136615726 136616102 -81421056 - L2 LINE L2 -209 3104 2653 436 286 59 0 chr3 136616295 136616414 -81420744 + MIR SINE MIR 85 210 -52 1964 96 36 4 chr3 136616415 136616696 -81420462 - AluSx SINE Alu -22 290 1 1999 130 0 0 chr3 136616697 136616982 -81420176 - AluSg SINE Alu -25 285 1 495 301 72 18 chr3 136617115 136617281 -81419877 + MIR SINE MIR 11 185 -77 365 256 33 0 chr3 136617295 136617385 -81419773 + AluY SINE Alu 2 94 -207 285 29 0 0 chr3 136617406 136617440 -81419718 + (TCC)n Simple_repeat Simple_repeat 2 35 0 193 251 11 34 chr3 136617505 136617680 -81419478 + CT-rich Low_complexity Low_complexity 2 172 0 213 338 0 0 chr3 136617741 136617818 -81419340 + CT-rich Low_complexity Low_complexity 1 77 0 270 261 15 56 chr3 136617925 136618134 -81419024 + CT-rich Low_complexity Low_complexity 1 200 0 346 370 0 0 chr3 136619013 136619186 -81417972 + G-rich Low_complexity Low_complexity 1 173 0 1595 144 87 10 chr3 136619216 136619528 -81417630 + Tigger2 DNA MER2_type 2372 2707 -11 2288 90 0 0 chr3 136619667 136619967 -81417191 + AluSg SINE Alu 1 300 -10 334 316 151 34 chr3 136620116 136620322 -81416836 + MIR SINE MIR 2 231 -31 399 41 0 0 chr3 136620575 136620624 -81416534 + (CA)n Simple_repeat Simple_repeat 2 50 0 344 132 0 0 chr3 136620724 136620777 -81416381 - Alu SINE Alu 0 308 256 595 142 39 87 chr3 136620777 136620904 -81416254 - AluJo/FLAM SINE Alu -181 121 1 262 280 13 13 chr3 136621000 136621075 -81416083 + Charlie4 DNA MER1_type 1883 1957 -4 303 303 92 28 chr3 136621165 136621307 -81415851 - MIR SINE MIR -111 151 1 181 245 122 0 chr3 136621281 136621330 -81415828 - L3 LINE CR1 -236 1341 1287 * 1986 263 159 13 chr3 136621340 136622039 -81415119 + L2 LINE L2 841 1641 -1673 1627 247 107 77 chr3 136622039 136622994 -81414164 + L2 LINE L2 2334 3311 -2 1562 170 0 74 chr3 136623716 136624039 -81413119 + AluJo SINE Alu 1 299 -13 2200 75 0 0 chr3 136624119 136624400 -81412758 + AluY SINE Alu 1 281 -30 577 330 86 48 chr3 136624445 136624842 -81412316 + L3b LINE CR1 1124 1535 -48 245 323 128 45 chr3 136625610 136625743 -81411415 - L2 LINE L2 -10 3262 3119 654 192 52 23 chr3 136625743 136625915 -81411243 + MER104 DNA MER2_type 1 177 -3 846 166 6 32 chr3 136625982 136626139 -81411019 + LTR9 LTR ERV1 1 153 -459 1669 98 0 29 chr3 136626140 136626384 -81410774 + AluSq SINE Alu 1 237 -76 305 303 64 29 chr3 136826628 136826942 -81210216 - L1ME4a LINE L1 -2 6119 5795 318 237 0 13 chr3 136826975 136827051 -81210107 + MIR SINE MIR 182 256 -6 318 50 0 0 chr3 136828018 136828058 -81209100 + (GGA)n Simple_repeat Simple_repeat 2 41 0 378 0 0 0 chr3 136828847 136828889 -81208269 + (CA)n Simple_repeat Simple_repeat 2 43 0 303 293 133 33 chr3 136829186 136829336 -81207822 - L1ME4a LINE L1 -492 5629 5465 247 211 79 13 chr3 136829445 136829521 -81207637 - HAL1 LINE L1 -105 2402 2322 315 286 134 0 chr3 136829590 136829702 -81207456 - HAL1 LINE L1 -550 1957 1831 2029 106 3 0 chr3 136830021 136830337 -81206821 - AluSx SINE Alu 0 317 1 275 276 128 51 chr3 136830535 136830792 -81206366 + HAL1 LINE L1 185 461 -2046 426 259 45 45 chr3 136831041 136831242 -81205916 + HAL1 LINE L1 840 1040 -1467 * 2055 131 37 11 chr3 136831226 136831576 -81205582 + L1MC2 LINE L1 5467 5825 -1960 596 195 25 0 chr3 136831580 136831698 -81205460 + FLAM_A SINE Alu 14 134 -8 1102 150 0 26 chr3 136831741 136831934 -81205224 + AluJb SINE Alu 112 299 -13 1954 185 152 9 chr3 136831934 136832389 -81204769 + L1MC2 LINE L1 5823 6342 -2 1381 186 34 68 chr3 136832396 136832996 -81204162 + L1MD2 LINE L1 4939 5512 -744 283 105 0 0 chr3 136832999 136833037 -81204121 + HERVH LTR ERV1 3956 3993 -3720 470 141 0 0 chr3 136833102 136833173 -81203985 + HERVH LTR ERV1 3994 4064 -3649 2051 169 31 0 chr3 136833173 136833523 -81203635 + L1MD2 LINE L1 5508 5868 -491 1309 112 5 15 chr3 136833624 136833830 -81203328 + AluSg/x SINE Alu 109 312 0 1034 270 97 27 chr3 136835034 136835943 -81201215 + L1ME4a LINE L1 5123 6118 -3 768 309 40 3 chr3 136835958 136836308 -81200850 + L1ME4a LINE L1 5754 6116 -5 2083 112 0 0 chr3 136836323 136836610 -81200548 - AluSx SINE Alu -25 287 1 239 258 0 16 chr3 136836633 136836695 -81200463 + L1ME LINE L1 5602 5662 -459 972 190 50 0 chr3 136836704 136836904 -81200254 + MER20 DNA MER1_type 3 212 -7 412 245 113 26 chr3 136837060 136837211 -81199947 + MLT1L LTR MaLR 431 594 -21 222 326 51 10 chr3 136837427 136837525 -81199633 + L2 LINE L2 2948 3049 -223 584 167 98 38 chr3 136837669 136837801 -81199357 + MER44D DNA MER2_type 4 413 -196 339 294 101 66 chr3 136837903 136838131 -81199027 - L1 LINE L1 -3311 2835 2600 1530 217 122 52 chr3 136838240 136838723 -81198435 - MLT2B1 LTR ERVL -3 517 1 494 143 95 12 chr3 136838874 136838958 -81198200 + MER21B LTR ERV1 13 103 -760 * 739 129 0 0 chr3 136838953 136839054 -81198104 + U6 snRNA snRNA 1 101 -6 2341 254 55 18 chr3 136839071 136839732 -81197426 + MER21B LTR ERV1 94 778 -85 182 182 0 0 chr3 136839757 136839790 -81197368 - L2 LINE L2 -1898 1416 1384 396 225 49 42 chr3 136839891 136840045 -81197113 + MIR SINE MIR 33 191 -59 33 66 0 0 chr3 136840077 136840138 -81197020 + AT_rich Low_complexity Low_complexity 1 61 0 1417 287 56 33 chr3 136840508 136841555 -81195603 + L1ME2 LINE L1 4851 5955 -209 589 326 45 53 chr3 136841797 136842327 -81194831 + L1 LINE L1 3032 3557 -2589 333 194 57 18 chr3 136842466 136842580 -81194578 + MLT1L LTR MaLR 95 277 -310 709 335 79 12 chr3 136842798 136843398 -81193760 + L1 LINE L1 3626 4264 -1882 435 268 81 0 chr3 136843398 136843521 -81193637 + MIR SINE MIR 109 241 -21 304 262 48 41 chr3 136843524 136843669 -81193489 + L1 LINE L1 4296 4441 -1705 2330 131 0 18 chr3 136843704 136844047 -81193111 - MER1B DNA MER1_type 0 337 1 1997 147 25 17 chr3 136844058 136844418 -81192740 + MLT1A1 LTR MaLR 1 363 -2 667 236 128 53 chr3 136845001 136845317 -81191841 - L1ME LINE L1 -516 5650 5286 2337 84 0 7 chr3 136845317 136845627 -81191531 - AluSg1 SINE Alu -1 308 1 667 236 128 53 chr3 136845627 136845721 -81191437 - L1ME LINE L1 -880 5286 5200 517 277 19 32 chr3 136846258 136846413 -81190745 - L1ME1 LINE L1 0 6166 6014 485 242 53 8 chr3 136847116 136847248 -81189910 + L1MD1 LINE L1 6092 6229 -13 289 317 179 16 chr3 136848166 136848478 -81188680 + L2 LINE L2 2273 2635 -679 530 279 109 44 chr3 136848485 136848816 -81188342 - L1MC5 LINE L1 -271 7690 7411 696 205 48 67 chr3 136848816 136849026 -81188132 - MER3 DNA MER1_type -3 206 1 530 279 109 44 chr3 136849026 136849193 -81187965 - L1MC5 LINE L1 -550 7411 7256 335 228 26 70 chr3 136849204 136849346 -81187812 - L1MC5 LINE L1 -645 7224 7024 1894 138 14 0 chr3 136849440 136849729 -81187429 - AluSx SINE Alu -17 295 3 583 280 53 93 chr3 136849796 136850192 -81186966 + L2 LINE L2 2858 3237 -35 303 337 64 32 chr3 136850529 136850716 -81186442 + L1 LINE L1 3313 3505 -2641 2918 245 144 78 chr3 136850887 136851959 -81185199 - HAL1 LINE L1 -705 1802 574 1861 108 0 4 chr3 136851959 136852219 -81184939 - AluJo SINE Alu -29 283 25 2918 245 144 78 chr3 136852219 136852834 -81184324 - HAL1 LINE L1 -1933 574 2 200 171 37 158 chr3 136855742 136855824 -81181334 + MER5A DNA MER1_type 85 156 -33 848 170 76 0 chr3 136856625 136856796 -81180362 + MER5A DNA MER1_type 6 189 0 39 95 0 0 chr3 136856812 136856928 -81180230 + AT_rich Low_complexity Low_complexity 1 116 0 2129 64 50 0 chr3 136856928 136857208 -81179950 + AluY SINE Alu 1 294 -17 387 0 0 0 chr3 136857209 136857252 -81179906 + (TA)n Simple_repeat Simple_repeat 1 43 0 210 294 0 0 chr3 136857267 136857318 -81179840 + CT-rich Low_complexity Low_complexity 3 53 0 410 267 329 9 chr3 136858042 136858386 -81178772 - L2 LINE L2 -4 3309 2856 1417 299 156 14 chr3 136858416 136859193 -81177965 - L2 LINE L2 -570 2744 1858 437 220 28 9 chr3 136859208 136859317 -81177841 + L1MD3 LINE L1 7871 7981 -14 337 327 83 5 chr3 136859362 136859567 -81177591 - L2 LINE L2 -1485 1829 1609 1047 306 151 14 chr3 136859596 136860226 -81176932 - L2 LINE L2 -1985 1329 614 463 345 57 3 chr3 136860408 136860704 -81176454 + MER20B DNA MER1_type 23 334 -449 1177 234 184 13 chr3 136860919 136861300 -81175858 - L1MD2 LINE L1 -14 6345 5900 * 4493 145 108 37 chr3 136861299 136862297 -81174861 - L1MDa LINE L1 -3984 2556 1488 287 319 88 0 chr3 136862429 136862542 -81174616 + L2 LINE L2 2975 3097 -216 1751 178 0 7 chr3 136862623 136862926 -81174232 - AluJb SINE Alu -11 301 1 253 227 94 65 chr3 136863347 136863482 -81173676 - LTR50 LTR ERVL -343 178 44 182 339 0 16 chr3 136863618 136863680 -81173478 + L3 LINE CR1 1497 1557 -20 1712 324 68 9 chr3 136863751 136864535 -81172623 - ERVL LTR ERVL -287 5477 4648 1155 196 14 27 chr3 136864567 136864786 -81172372 + MER58A DNA MER1_type 9 224 0 1343 265 82 23 chr3 136864792 136865514 -81171644 - ERVL LTR ERVL -1069 4585 3836 528 335 30 19 chr3 136865840 136866103 -81171055 - ERVL LTR ERVL -5147 617 352 214 307 131 66 chr3 136866243 136866380 -81170778 + L2 LINE L2 3137 3282 -31 591 269 176 0 chr3 136866871 136867127 -81170031 - MLT1H LTR MaLR -248 301 1 622 316 34 44 chr3 136867343 136867663 -81169495 + L1ME3 LINE L1 3 319 -5800 2443 200 72 19 chr3 136867677 136868207 -81168951 + MER89 LTR ERV1 1 558 -1 1477 298 75 33 chr3 136868281 136870292 -81166866 + L1ME3 LINE L1 3792 5914 -247 2185 111 26 57 chr3 136870303 136870690 -81166468 - THE1C LTR MaLR 0 375 1 243 0 0 0 chr3 136870879 136870906 -81166252 + (CA)n Simple_repeat Simple_repeat 2 28 0 348 139 0 56 chr3 136871246 136871318 -81165840 + MER103 DNA DNA 53 120 -46 1189 253 42 42 chr3 136871539 136871970 -81165188 + L1ME1 LINE L1 5735 6165 -1 676 266 159 60 chr3 136872430 136872964 -81164194 + MLT1K LTR MaLR 2 588 0 202 273 0 0 chr3 136873126 136873170 -81163988 - MIR SINE MIR -109 153 110 3850 206 27 41 chr3 136874191 136875112 -81162046 + L1M4 LINE L1 1 908 -5634 576 276 83 10 chr3 136876032 136876224 -81160934 + MIR SINE MIR 46 251 -11 272 342 9 18 chr3 136877256 136877370 -81159788 + MIR SINE MIR 33 145 -63 291 327 125 40 chr3 136877548 136877869 -81159289 + L2 LINE L2 2920 3267 -5 500 174 200 9 chr3 136878209 136878324 -81158834 - FRAM SINE Alu -6 170 34 324 0 0 0 chr3 136878344 136878380 -81158778 + (CAAAAA)n Simple_repeat Simple_repeat 4 39 0 322 244 11 0 chr3 136879521 136879611 -81157547 + L1ME3 LINE L1 6054 6144 -1 250 284 14 14 chr3 136879631 136879705 -81157453 + CT-rich Low_complexity Low_complexity 1 74 0 260 210 0 32 chr3 136880195 136880257 -81156901 + CT-rich Low_complexity Low_complexity 1 60 0 334 341 29 14 chr3 136880377 136880515 -81156643 + MIR3 SINE MIR 4 143 -65 356 240 48 0 chr3 136880929 136881033 -81156125 - Charlie8 DNA MER1_type -2259 158 50 216 299 103 23 chr3 136881062 136881149 -81156009 - MIR SINE MIR -102 160 67 714 211 0 0 chr3 136881173 136881353 -81155805 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 758 327 71 50 chr3 136881369 136881668 -81155490 - L2 LINE L2 -1 3312 3000 2421 80 0 0 chr3 136881668 136881969 -81155189 + AluSp SINE Alu 1 301 -12 758 327 71 50 chr3 136881969 136882106 -81155052 - L2 LINE L2 -313 3000 2867 349 255 149 43 chr3 136882151 136882359 -81154799 - L2 LINE L2 -666 2648 2419 265 376 81 11 chr3 136882567 136882753 -81154405 - MIR SINE MIR -29 233 35 1037 280 88 41 chr3 136883103 136883419 -81153739 + MLT1H LTR MaLR 15 366 -183 4029 148 12 5 chr3 136883419 136884070 -81153088 + L1MA3 LINE L1 5649 6304 -1 1037 280 88 41 chr3 136884070 136884264 -81152894 + MLT1H LTR MaLR 366 549 0 579 270 90 26 chr3 136884648 136884881 -81152277 + MIR SINE MIR 13 260 -2 260 331 66 11 chr3 136885324 136885476 -81151682 - MIR SINE MIR -11 197 31 202 324 10 49 chr3 136885801 136885903 -81151255 + MIR3 SINE MIR 110 207 -1 253 235 24 12 chr3 136888082 136888167 -81148991 + (CA)n Simple_repeat Simple_repeat 1 86 0 471 182 0 0 chr3 136888376 136888497 -81148661 + CT-rich Low_complexity Low_complexity 2 122 0 279 0 0 0 chr3 136888497 136888528 -81148630 + (CA)n Simple_repeat Simple_repeat 1 31 0 279 270 48 109 chr3 136888892 136889122 -81148036 - L2 LINE L2 -25 3247 3032 244 164 18 18 chr3 136889471 136889526 -81147632 - MIR3 SINE MIR -37 171 117 221 279 8 0 chr3 136889627 136889756 -81147402 + (TG)n Simple_repeat Simple_repeat 1 130 0 251 358 62 5 chr3 136890247 136890440 -81146718 + L1ME3 LINE L1 5862 6065 -97 369 312 7 7 chr3 136892541 136892695 -81144463 + (CA)n Simple_repeat Simple_repeat 2 155 0 277 414 23 0 chr3 136893103 136893231 -81143927 - L2 LINE L2 -1 3312 3182 373 291 79 21 chr3 136893517 136893706 -81143452 - L2 LINE L2 -652 2662 2463 1507 190 192 7 chr3 136893778 136894199 -81142959 + MLT1D LTR MaLR 7 505 0 234 236 285 7 chr3 136894247 136894391 -81142767 - L2 LINE L2 -1053 2261 2078 1327 269 12 8 chr3 136894431 136894832 -81142326 + L1ME1 LINE L1 5759 6161 -5 205 238 125 0 chr3 136894832 136894912 -81142246 - L2 LINE L2 -1296 2018 1929 239 255 78 50 chr3 136894972 136895113 -81142045 + MLT1L LTR MaLR 134 278 -337 1656 157 0 0 chr3 136895294 136895549 -81141609 - AluSx SINE Alu -30 282 28 465 276 141 24 chr3 136895699 136895989 -81141169 + LTR33 LTR ERVL 133 456 -65 365 348 76 19 chr3 136896609 136896702 -81140456 + L1M4 LINE L1 2188 2274 -3872 2299 99 3 10 chr3 136896702 136897016 -81140142 + AluSx SINE Alu 1 312 0 365 348 76 19 chr3 136897016 136897132 -81140026 + L1M4 LINE L1 2274 2409 -3737 519 278 224 15 chr3 136897682 136897887 -81139271 - MIR SINE MIR -5 257 10 204 341 59 0 chr3 136899076 136899161 -81137997 + MIR SINE MIR 144 233 -29 2280 177 34 0 chr3 136899216 136899629 -81137529 - MSTB1 LTR MaLR -1 431 5 251 216 38 29 chr3 136899695 136899910 -81137248 + (CATA)n Simple_repeat Simple_repeat 1 217 0 217 250 167 0 chr3 136899911 136899983 -81137175 - MIR SINE MIR -57 205 122 2311 82 0 0 chr3 136900464 136900756 -81136402 + AluSq SINE Alu 1 292 -21 884 302 138 19 chr3 136901011 136901525 -81135633 + MLT1K LTR MaLR 14 588 0 1674 231 52 35 chr3 136901741 136902279 -81134879 - LTR38 LTR ERV1 -9 547 1 216 244 47 85 chr3 136902290 136902428 -81134730 + MIR3 SINE MIR 34 163 -45 229 346 233 19 chr3 136902455 136902614 -81134544 - L2 LINE L2 0 3313 3121 353 295 0 0 chr3 136902674 136902786 -81134372 + Charlie5 DNA MER1_type 16 127 -2485 958 193 19 78 chr3 136902807 136903181 -81133977 + Charlie5 DNA MER1_type 2272 2623 0 513 268 142 0 chr3 136903211 136903401 -81133757 - L2 LINE L2 -246 3067 2851 597 246 110 28 chr3 136903458 136903769 -81133389 + MLT1G1 LTR MaLR 16 325 -265 248 255 53 11 chr3 136903762 136903856 -81133302 + MLT1G1 LTR MaLR 434 531 -59 * 437 241 26 26 chr3 136903962 136904078 -81133080 - L2 LINE L2 -576 2738 2623 325 346 22 7 chr3 136904177 136904313 -81132845 - MIR SINE MIR -117 145 8 404 290 16 16 chr3 136904601 136904725 -81132433 + MIR3 SINE MIR 70 193 -15 507 189 122 47 chr3 136904759 136904907 -81132251 - MLT1K LTR MaLR -15 573 415 245 242 0 55 chr3 136904993 136905084 -81132074 - MLT1K LTR MaLR -338 250 165 398 245 142 27 chr3 136906097 136906341 -81130817 + MLT1H LTR MaLR 7 332 -217 5470 106 31 48 chr3 136906341 136907755 -81129403 + pTR5 LTR ERV1 744 2295 -143 320 204 17 23 chr3 136907872 136908044 -81129114 + (CAGCC)n Simple_repeat Simple_repeat 2 172 0 315 184 11 43 chr3 136908100 136908285 -81128873 + (CAGCC)n Simple_repeat Simple_repeat 2 180 0 264 309 11 0 chr3 136908745 136908839 -81128319 + (CA)n Simple_repeat Simple_repeat 2 96 0 561 322 75 7 chr3 136908950 136909245 -81127913 + L1MC/D LINE L1 5437 5751 -2057 312 307 68 6 chr3 136910385 136910561 -81126597 - LTR16C LTR ERVL -1 490 304 495 353 24 0 chr3 136910996 136911163 -81125995 - MIR SINE MIR -76 186 16 260 293 138 17 chr3 136911875 136912084 -81125074 + MLT1G LTR MaLR 6 199 -391 644 217 128 38 chr3 136912129 136912364 -81124794 + MLT1G LTR MaLR 324 579 -11 245 277 18 89 chr3 136912765 136912877 -81124281 + MER5A DNA MER1_type 9 112 -77 308 336 70 94 chr3 136913401 136913859 -81123299 - HAL1 LINE L1 -1132 1375 929 499 262 144 27 chr3 136914782 136915310 -81121848 - MLT1E1 LTR MaLR 0 624 1 522 267 219 10 chr3 136916563 136917036 -81120122 + L1ME LINE L1 4945 5515 -649 244 284 11 34 chr3 136917146 136917234 -81119924 + L1ME LINE L1 5676 5761 -401 362 247 0 0 chr3 136917290 136917375 -81119783 - MER81 DNA DNA -26 88 4 241 302 10 28 chr3 136917389 136917497 -81119661 + L1ME LINE L1 5843 5948 -222 23 0 0 0 chr3 136917730 136917753 -81119405 + AT_rich Low_complexity Low_complexity 1 23 0 244 229 52 26 chr3 136919145 136919298 -81117860 + (TA)n Simple_repeat Simple_repeat 1 157 0 338 354 46 33 chr3 136919324 136919406 -81117752 + L1MC4a LINE L1 5665 5744 -2064 1696 167 3 29 chr3 136919406 136919712 -81117446 + AluJo SINE Alu 1 298 -14 338 354 46 33 chr3 136919712 136919869 -81117289 + L1MC4a LINE L1 5744 5907 -1901 479 271 54 12 chr3 136920192 136920358 -81116800 - MER58C DNA MER1_type -42 173 1 413 310 80 7 chr3 136920358 136920645 -81116513 + L1M4 LINE L1 3898 4205 -1941 552 326 86 50 chr3 136920646 136920696 -81116462 + L1M4 LINE L1 4301 4348 -1798 5999 131 27 0 chr3 136920696 136921575 -81115583 - MER4D LTR ERV1 0 903 1 552 326 86 50 chr3 136921575 136922159 -81114999 + L1M4 LINE L1 4348 5016 -1130 236 342 11 65 chr3 136922453 136922637 -81114521 + L2 LINE L2 2809 2982 -290 603 349 23 19 chr3 136922975 136923233 -81113925 - MLT1K LTR MaLR -293 295 37 1152 111 0 0 chr3 136923457 136923637 -81113521 + (CAGAC)n Simple_repeat Simple_repeat 1 180 0 1026 140 0 0 chr3 136923663 136923842 -81113316 + (CAGAC)n Simple_repeat Simple_repeat 2 180 0 662 99 0 20 chr3 136923950 136924051 -81113107 + L1MA2 LINE L1 6206 6304 0 24 0 0 0 chr3 136924056 136924080 -81113078 + AT_rich Low_complexity Low_complexity 1 24 0 578 267 60 40 chr3 136924160 136924411 -81112747 + Charlie8 DNA MER1_type 35 290 -2127 309 238 48 24 chr3 136925289 136925373 -81111785 - MIR SINE MIR -70 192 107 958 275 24 3 chr3 136925487 136925785 -81111373 - MER33 DNA MER1_type 0 324 21 416 225 187 5 chr3 136926972 136927159 -81109999 - LTR16A1 LTR ERVL -11 446 226 1488 178 50 7 chr3 136928157 136928455 -81108703 + L1MB3 LINE L1 5858 6168 -15 2114 110 0 3 chr3 136928463 136928754 -81108404 - AluSx SINE Alu -20 292 3 27 0 0 0 chr3 136928762 136928789 -81108369 + AT_rich Low_complexity Low_complexity 1 27 0 1863 148 28 0 chr3 136928798 136929089 -81108069 + AluJo SINE Alu 10 308 -4 200 423 21 0 chr3 136929920 136930017 -81107141 + L2 LINE L2 3162 3260 -12 1146 229 52 13 chr3 136930078 136930388 -81106770 + MER102b DNA MER1_type 20 341 0 312 48 0 0 chr3 136930415 136930457 -81106701 + (TG)n Simple_repeat Simple_repeat 1 42 0 235 341 0 22 chr3 136930809 136930900 -81106258 + MIR3 SINE MIR 96 184 -24 1067 289 151 11 chr3 136932078 136932521 -81104637 + MLT1K LTR MaLR 76 580 -8 927 226 39 0 chr3 136932776 136932980 -81104178 - MER58A DNA MER1_type 0 224 13 288 324 9 9 chr3 136933187 136933292 -81103866 + MIR SINE MIR 21 125 -137 382 338 90 0 chr3 136933810 136934011 -81103147 + L1ME4a LINE L1 5676 5894 -227 280 157 143 14 chr3 136934260 136934330 -81102828 + HERV3 LTR ERV1 1686 1764 -6662 719 257 120 0 chr3 136934349 136934625 -81102533 + MLT1H1 LTR MaLR 262 551 -4 256 375 6 6 chr3 136935034 136935194 -81101964 + REP3 LTR ERV 110 316 -246 203 250 0 0 chr3 136935462 136935510 -81101648 + L2 LINE L2 2927 2974 -298 327 311 60 29 chr3 136936115 136936362 -81100796 + MIR SINE MIR 12 261 -1 750 133 0 0 chr3 136936395 136936500 -81100658 + FLAM_C SINE Alu 2 106 -37 407 303 73 0 chr3 136936500 136936678 -81100480 - LTR16C LTR ERVL -38 453 263 3760 181 27 68 chr3 136936692 136937589 -81099569 + L1MB2 LINE L1 4827 5759 -412 1952 136 0 34 chr3 136937589 136937912 -81099246 + AluSx SINE Alu 1 312 0 3760 181 27 68 chr3 136937912 136938313 -81098845 + L1MB2 LINE L1 5759 6064 -107 1618 185 17 10 chr3 136938313 136938605 -81098553 + AluSx SINE Alu 1 294 -18 3760 181 27 68 chr3 136938605 136938706 -81098452 + L1MB2 LINE L1 6064 6168 -3 301 306 37 0 chr3 136938836 136938944 -81098214 - LTR16C LTR ERVL -244 247 136 548 238 143 0 chr3 136939091 136939259 -81097899 - MIR SINE MIR -69 193 2 201 121 0 0 chr3 136940405 136940438 -81096720 + (TC)n Simple_repeat Simple_repeat 1 33 0 300 287 19 37 chr3 136940641 136940749 -81096409 - MIR SINE MIR -1 261 156 721 266 116 7 chr3 136940934 136941223 -81095935 + MLT1G LTR MaLR 219 533 -62 285 250 13 0 chr3 136941258 136941334 -81095824 - MIR SINE MIR -110 152 76 346 234 39 39 chr3 136941365 136941493 -81095665 + MLT1H LTR MaLR 81 208 -341 320 287 82 10 chr3 136942333 136942485 -81094673 - MIR3 SINE MIR -65 143 2 512 255 67 108 chr3 136942588 136942929 -81094229 + L2 LINE L2 2916 3242 -30 301 259 0 12 chr3 136943742 136943827 -81093331 - Charlie8 DNA MER1_type -2246 171 88 427 291 40 0 chr3 136944012 136944163 -81092995 - MIR SINE MIR -58 204 48 966 219 122 7 chr3 136944220 136944463 -81092695 - MER44D DNA MER2_type -63 546 3 448 269 51 34 chr3 136945906 136946081 -81091077 + MER63A DNA MER1_type 27 204 -6 300 211 0 0 chr3 136946129 136946186 -81090972 - L1ME LINE L1 -465 5725 5669 1073 165 0 0 chr3 136946192 136946368 -81090790 - AluJb SINE Alu 0 312 137 373 344 48 16 chr3 136946371 136946557 -81090601 - L1ME LINE L1 -512 5678 5487 498 349 73 26 chr3 136947522 136947923 -81089235 - L1MEc LINE L1 -3711 2523 2118 1968 131 7 3 chr3 136947933 136948238 -81088920 - AluSx SINE Alu -6 306 1 236 184 41 0 chr3 136948972 136949021 -81088137 + LTR33 LTR ERVL 383 433 -88 4097 127 60 3 chr3 136949025 136949693 -81087465 - MER50 LTR ERV1 -28 706 1 335 327 117 39 chr3 136950071 136950747 -81086411 - HAL1 LINE L1 -738 1769 1041 1580 191 61 31 chr3 136951130 136951162 -81085996 - MLT2B2 LTR ERVL -7 508 478 449 62 15 0 chr3 136951162 136951227 -81085931 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 1580 191 61 31 chr3 136951227 136951645 -81085513 - MLT2B2 LTR ERVL -37 478 1 695 256 72 123 chr3 136951810 136951914 -81085244 - LTR16A LTR ERVL -57 393 285 2580 33 0 3 chr3 136951914 136952219 -81084939 + AluY SINE Alu 1 304 -7 695 256 72 123 chr3 136952219 136952528 -81084630 - LTR16A LTR ERVL -165 285 1 2794 94 11 3 chr3 136952840 136953211 -81083947 + THE1C LTR MaLR 1 374 -1 270 264 56 0 chr3 136953313 136953385 -81083773 - MER113 DNA MER1_type? -283 238 163 200 349 80 34 chr3 136953394 136953569 -81083589 - L3 LINE CR1 -1232 345 163 1317 231 13 7 chr3 136953880 136954178 -81082980 + AluJo SINE Alu 3 302 -10 803 296 100 14 chr3 136954325 136954696 -81082462 - MER113 DNA MER1_type? -112 409 7 187 300 0 0 chr3 136955158 136955208 -81081950 - L2 LINE L2 -13 3259 3210 242 295 25 66 chr3 136955505 136955627 -81081531 - MLT1J LTR MaLR -370 141 25 544 305 80 19 chr3 136956104 136956317 -81080841 - MIR SINE MIR -36 226 1 466 289 94 82 chr3 136957195 136957610 -81079548 - L2 LINE L2 0 3272 2853 668 335 85 10 chr3 136958322 136958722 -81078436 + LTR16B LTR ERVL 34 463 -1 268 330 44 0 chr3 136959250 136959341 -81077817 - MIR SINE MIR -84 124 30 228 369 17 25 chr3 136959435 136959671 -81077487 + L1ME LINE L1 4743 4976 -1170 2650 149 36 0 chr3 136959914 136960331 -81076827 - MSTB1 LTR MaLR 0 432 1 390 357 62 58 chr3 136960391 136960716 -81076442 + L1ME LINE L1 5356 5681 -440 347 193 73 28 chr3 136960756 136960865 -81076293 - L1MC5 LINE L1 -34 7927 7814 675 237 62 40 chr3 136960867 136961171 -81075987 - L1MC5 LINE L1 -184 7777 7467 1542 187 52 16 chr3 136962166 136962647 -81074511 - MER74A LTR ERVL 0 558 1 300 303 74 6 chr3 136962647 136962822 -81074336 + L2 LINE L2 2433 2619 -695 685 294 154 37 chr3 136962885 136963404 -81073754 + MLT1H1 LTR MaLR 13 555 0 466 301 156 0 chr3 136963406 136963592 -81073566 + L2 LINE L2 2677 2891 -423 3830 159 32 38 chr3 136963689 136964430 -81072728 + L1MB3 LINE L1 5445 6181 -2 203 368 136 0 chr3 136964508 136964633 -81072525 - L2 LINE L2 -9 3263 3122 429 266 44 0 chr3 136964731 136964844 -81072314 + MIR SINE MIR 82 199 -63 1952 141 0 0 chr3 136965804 136966112 -81071046 - AluSx SINE Alu 0 308 1 247 333 65 37 chr3 136966186 136966294 -81070864 - MIR SINE MIR -87 121 11 558 148 66 9 chr3 136967036 136967209 -81069949 - MER33 DNA MER1_type -50 313 46 210 234 125 0 chr3 136967212 136967276 -81069882 - L2 LINE L2 -62 3251 3180 1294 277 140 21 chr3 136968227 136968891 -81068267 - L2 LINE L2 -339 2975 2233 519 306 73 15 chr3 136968985 136969246 -81067912 - LTR16A LTR ERVL -143 307 32 201 250 54 0 chr3 136969294 136969350 -81067808 - MIR SINE MIR -119 143 85 435 240 48 16 chr3 136969615 136969740 -81067418 - MIR SINE MIR -48 214 86 284 280 53 33 chr3 136970701 136970851 -81066307 - MIR SINE MIR -87 175 23 447 280 101 0 chr3 136970965 136971154 -81066004 + L2 LINE L2 2853 3060 -253 195 313 36 12 chr3 136971212 136971295 -81065863 + L2 LINE L2 3178 3262 -51 205 320 135 19 chr3 136971339 136971495 -81065663 - MIR SINE MIR -16 246 73 252 297 102 50 chr3 136973182 136973472 -81063686 + L1MB7 LINE L1 5632 5939 -245 518 189 0 8 chr3 136973809 136974060 -81063098 + (CA)n Simple_repeat Simple_repeat 1 248 0 482 214 0 11 chr3 136974072 136974254 -81062904 + (CA)n Simple_repeat Simple_repeat 1 180 0 624 182 0 0 chr3 136974291 136974467 -81062691 + (CA)n Simple_repeat Simple_repeat 2 177 0 534 207 0 0 chr3 136974487 136974666 -81062492 + (CA)n Simple_repeat Simple_repeat 2 180 0 718 170 11 0 chr3 136974692 136974978 -81062180 + (CA)n Simple_repeat Simple_repeat 1 289 0 541 175 9 0 chr3 136974991 136975223 -81061935 + (CA)n Simple_repeat Simple_repeat 1 234 0 275 194 22 8 chr3 136975244 136975378 -81061780 + (CA)n Simple_repeat Simple_repeat 1 136 0 405 214 17 7 chr3 136975395 136975779 -81061379 + (CA)n Simple_repeat Simple_repeat 1 387 0 294 229 0 0 chr3 136975875 136975997 -81061161 + (CA)n Simple_repeat Simple_repeat 1 122 0 279 219 49 12 chr3 136977061 136977200 -81059958 + MLT1G1 LTR MaLR 239 457 -110 670 173 60 7 chr3 136977252 136977402 -81059756 + MLT1A2 LTR MaLR 4 161 -213 819 122 16 8 chr3 136977529 136977652 -81059506 - AluJb SINE Alu -188 124 1 1649 243 115 35 chr3 136977652 136978639 -81058519 - L1MDa LINE L1 -5310 1230 16 998 136 23 0 chr3 136980627 136980804 -81056354 - L1MA7 LINE L1 -1 6290 6110 194 172 150 29 chr3 136981194 136981299 -81055859 - MIR SINE MIR -89 119 2 192 278 133 0 chr3 136983504 136983594 -81053564 + MIR SINE MIR 78 179 -83 325 250 189 0 chr3 136983709 136983841 -81053317 + MIR SINE MIR 56 212 -50 533 291 91 17 chr3 136983993 136984343 -81052815 + MER90 LTR ERV1 3 378 -197 296 320 77 0 chr3 136984541 136984697 -81052461 - LTR33A LTR ERVL -31 492 325 383 213 188 25 chr3 136984775 136984935 -81052223 - LTR33A LTR ERVL -328 195 10 400 284 0 0 chr3 136984968 136985063 -81052095 + C-rich Low_complexity Low_complexity 4 98 0 439 248 134 0 chr3 136985583 136985732 -81051426 - MER113 DNA MER1_type? -193 328 160 1652 156 108 0 chr3 136985776 136986045 -81051113 + AluJb SINE Alu 1 298 -14 628 265 142 51 chr3 136987058 136987431 -81049727 + L1M4 LINE L1 2942 3348 -2798 2095 104 38 0 chr3 136987465 136987753 -81049405 + AluSp SINE Alu 1 299 -14 389 299 107 56 chr3 136987874 136988392 -81048766 + L1M4 LINE L1 2547 3984 -2162 1081 261 138 24 chr3 136988509 136989300 -81047858 + L1MA9 LINE L1 2856 3741 -3824 569 128 0 0 chr3 136989309 136989395 -81047763 + HY3 scRNA scRNA 14 99 -2 625 284 104 10 chr3 136989397 136989809 -81047349 + L1MA9 LINE L1 3734 4184 -3381 461 290 77 11 chr3 136989804 136990076 -81047082 + L1M4 LINE L1 4979 5268 -878 * 390 276 110 60 chr3 136990114 136990377 -81046781 + L1MC4 LINE L1 7507 7892 -150 226 274 49 29 chr3 136990445 136990547 -81046611 + L1MC4 LINE L1 7905 8008 -34 2313 212 98 42 chr3 136990582 136991276 -81045882 - MER44D DNA MER2_type 0 605 1 419 250 73 29 chr3 136992433 136992569 -81044589 + L1MA9 LINE L1 4338 4479 -3086 2494 218 58 38 chr3 136992573 136993424 -81043734 + L1MA9 LINE L1 6820 7693 -38 22 0 0 0 chr3 136993600 136993622 -81043536 + AT_rich Low_complexity Low_complexity 1 22 0 191 141 47 109 chr3 136996493 136996557 -81040601 - L2 LINE L2 -825 2489 2430 1338 75 150 0 chr3 136997337 136997537 -81039621 - MER30 DNA MER1_type 0 230 1 330 268 0 0 chr3 136999280 136999362 -81037796 - MIR SINE MIR -8 254 173 309 273 86 43 chr3 136999514 136999701 -81037457 + LTR33 LTR ERVL 296 490 -31 878 201 0 24 chr3 136999831 137000000 -81037158 - FRAM SINE Alu 0 166 2 21 89 0 0 chr3 137000289 137000345 -81036813 + AT_rich Low_complexity Low_complexity 1 56 0 295 321 41 19 chr3 137000372 137000733 -81036425 - L1M4c LINE L1 -828 1679 1309 817 223 114 53 chr3 137000785 137001198 -81035960 + L1ME3 LINE L1 4630 5067 -1079 645 184 7 0 chr3 137001189 137001330 -81035828 + L1MD3 LINE L1 7845 7986 -9 * 525 281 52 30 chr3 137001300 137001570 -81035588 + L1ME3 LINE L1 5017 5292 -854 * 553 160 189 0 chr3 137001589 137001695 -81035463 + FRAM SINE Alu 24 149 -27 1434 233 123 48 chr3 137001716 137001862 -81035296 + L1ME3 LINE L1 5474 5608 -554 333 118 0 0 chr3 137001862 137001913 -81035245 + (TA)n Simple_repeat Simple_repeat 2 52 0 1434 233 123 48 chr3 137001913 137002345 -81034813 + L1ME3 LINE L1 5608 6095 -67 807 196 35 8 chr3 137002344 137002539 -81034619 + L1MDa LINE L1 1261 1539 -4843 * 9286 200 45 18 chr3 137002537 137005480 -81031678 + L1MB7 LINE L1 2866 5909 -275 1765 152 73 14 chr3 137005480 137005769 -81031389 + AluSx SINE Alu 7 312 0 9286 200 45 18 chr3 137005769 137006037 -81031121 + L1MB7 LINE L1 5909 6168 -16 192 40 0 0 chr3 137006421 137006446 -81030712 + (GA)n Simple_repeat Simple_repeat 1 25 0 327 206 151 0 chr3 137006447 137006520 -81030638 + L1MC4 LINE L1 7929 8012 -30 888 204 16 21 chr3 137007807 137007993 -81029165 + AluJo SINE Alu 108 292 -20 227 91 0 45 chr3 137007993 137008037 -81029121 + (AGGGGG)n Simple_repeat Simple_repeat 5 46 0 3307 107 6 4 chr3 137108431 137108910 -80928248 - MER41A LTR ERV1 -74 480 1 11342 104 55 30 chr3 137108910 137112208 -80924950 - HUERS-P1 LTR ERV1 -2 5944 2163 968 140 0 0 chr3 137112200 137112350 -80924808 - HUERS-P1 LTR ERV1 -3929 2017 1868 * 3913 122 21 39 chr3 137112352 137113472 -80923686 - HUERS-P1 LTR ERV1 -4377 2052 1 3858 93 20 7 chr3 137113557 137114104 -80923054 - MER41A LTR ERV1 0 554 1 491 324 158 12 chr3 137114313 137114566 -80922592 + L3 LINE CR1 807 1096 -481 417 292 134 5 chr3 137115261 137115470 -80921688 + MIR SINE MIR 20 255 -7 399 254 32 5 chr3 137116243 137116435 -80920723 + MER41E LTR ERV1 226 509 -3 399 311 44 33 chr3 137116684 137116914 -80920244 - MIR SINE MIR -3 259 33 451 255 107 10 chr3 137117078 137117274 -80919884 - LTR16A LTR ERVL -35 415 201 375 299 47 57 chr3 137117919 137118130 -80919028 - Charlie8 DNA MER1_type -2172 245 37 594 292 87 0 chr3 137118454 137118742 -80918416 - L2 LINE L2 -527 2787 2475 304 193 138 28 chr3 137119513 137119622 -80917536 + MIR SINE MIR 28 148 -114 287 273 48 91 chr3 137120251 137120438 -80916720 - MIR SINE MIR -39 223 45 442 208 148 129 chr3 137120649 137120967 -80916191 + LTR33A LTR ERVL 6 329 -194 236 190 35 17 chr3 137121018 137121076 -80916082 + LTR33A LTR ERVL 440 498 -25 8606 41 8 9 chr3 137122146 137123116 -80914042 - LTR5 LTR ERVK 0 969 1 401 235 10 20 chr3 137123826 137123924 -80913234 - MIR SINE MIR -75 187 91 1156 171 5 9 chr3 137123939 137124149 -80913009 + LTR1B LTR ERV1 7 215 -611 826 153 6 65 chr3 137124162 137124332 -80912826 + LTR1B LTR ERV1 667 826 0 191 161 129 39 chr3 137124335 137124418 -80912740 - MIR SINE MIR -105 103 6 338 242 105 0 chr3 137125191 137125286 -80911872 - L2 LINE L2 0 3313 3209 817 290 24 38 chr3 137125297 137125377 -80911781 - MLT1L LTR MaLR 0 615 535 726 138 14 51 chr3 137125377 137125515 -80911643 - FLAM_C SINE Alu 0 133 1 817 290 24 38 chr3 137125515 137125727 -80911431 - MLT1L LTR MaLR -80 535 327 4735 237 49 32 chr3 137125792 137126032 -80911126 + L1ME2 LINE L1 3979 4214 -1950 1561 137 56 4 chr3 137126032 137126266 -80910892 + AluJb SINE Alu 47 292 -20 4735 237 49 32 chr3 137126266 137128167 -80908991 + L1ME2 LINE L1 4214 6155 -9 265 270 146 0 chr3 137128202 137128291 -80908867 - MLT1L LTR MaLR -377 238 137 195 286 0 0 chr3 137128510 137128566 -80908592 - L2 LINE L2 -252 3061 3006 363 296 83 8 chr3 137128696 137128828 -80908330 - L2 LINE L2 -535 2779 2638 395 307 68 0 chr3 137129090 137129236 -80907922 - MIR SINE MIR -54 208 54 294 225 38 12 chr3 137131761 137131841 -80905317 - MIR SINE MIR -14 248 167 1201 82 0 0 chr3 137131841 137131987 -80905171 - AluY SINE Alu -11 300 155 588 255 6 28 chr3 137131989 137132152 -80905006 - MIR SINE MIR -63 145 21 202 224 41 0 chr3 137132703 137132752 -80904406 + MIR SINE MIR 97 147 -115 185 387 28 9 chr3 137133760 137133866 -80903292 - MIR SINE MIR -106 156 49 473 240 0 6 chr3 137133952 137134123 -80903035 + CT-rich Low_complexity Low_complexity 1 170 0 231 172 16 47 chr3 137134137 137134201 -80902957 + CT-rich Low_complexity Low_complexity 3 64 0 369 324 87 21 chr3 137134638 137134879 -80902279 - L2 LINE L2 -30 3242 2986 409 259 150 77 chr3 137135096 137135475 -80901683 + L2 LINE L2 2857 3263 -9 225 0 0 0 chr3 137135853 137135878 -80901280 + (CA)n Simple_repeat Simple_repeat 1 25 0 330 285 100 8 chr3 137136015 137136145 -80901013 + MLT1K LTR MaLR 214 355 -233 251 250 0 0 chr3 137136627 137136687 -80900471 - MIR SINE MIR -103 159 100 738 248 182 19 chr3 137137957 137138385 -80898773 + L2 LINE L2 2472 2969 -345 319 223 136 19 chr3 137138392 137138495 -80898663 + L2 LINE L2 3198 3312 -1 673 302 68 13 chr3 137139138 137139373 -80897785 - MLT1K LTR MaLR 0 588 341 629 317 32 18 chr3 137139719 137140214 -80896944 - L1M4 LINE L1 -2887 3259 2758 338 307 42 52 chr3 137140508 137140701 -80896457 - L1M4 LINE L1 -3111 3035 2845 674 313 33 37 chr3 137140760 137141220 -80895938 + L1 LINE L1 3687 4144 -2002 425 342 230 18 chr3 137141301 137141684 -80895474 + L1 LINE L1 4151 4614 -1532 279 157 0 0 chr3 137141801 137141852 -80895306 + (TG)n Simple_repeat Simple_repeat 1 51 0 1202 149 0 0 chr3 137141928 137142096 -80895062 - FRAM SINE Alu -8 168 1 640 269 64 60 chr3 137142251 137142534 -80894624 - MLT1K LTR MaLR -241 289 6 441 282 9 52 chr3 137142787 137142944 -80894214 + L1ME LINE L1 2341 2493 -3933 309 311 73 42 chr3 137142961 137143550 -80893608 + L1ME LINE L1 2536 3142 -3284 277 306 42 29 chr3 137143547 137143854 -80893304 + L1ME LINE L1 3539 3849 -2577 * 10676 25 0 0 chr3 137143856 137145948 -80891210 + L1PA2 LINE L1 4069 6155 0 32 0 0 0 chr3 137145948 137145980 -80891178 + AT_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr3 137145993 137146019 -80891139 + AT_rich Low_complexity Low_complexity 1 26 0 316 347 16 11 chr3 137146019 137146260 -80890898 + L1ME LINE L1 3834 4075 -2351 * 521 298 53 0 chr3 137146255 137146426 -80890732 + L1ME3A LINE L1 5911 6090 -80 477 300 56 31 chr3 137146499 137146822 -80890336 + L1ME LINE L1 4078 4408 -2018 486 272 70 77 chr3 137146822 137147146 -80890012 + L1ME LINE L1 5191 5512 -914 609 338 88 12 chr3 137147155 137147643 -80889515 + L1ME LINE L1 5539 6063 -387 897 156 7 0 chr3 137147643 137147778 -80889380 + AluJo SINE Alu 1 136 -176 231 254 27 45 chr3 137148186 137148296 -80888862 + L1MC/D LINE L1 4581 4688 -1458 450 264 60 42 chr3 137148572 137148915 -80888243 + L1MC/D LINE L1 5175 5524 -652 1123 120 0 0 chr3 137148930 137149108 -80888050 - FRAM SINE Alu 0 174 1 198 174 0 58 chr3 137149915 137149984 -80887174 + GA-rich Low_complexity Low_complexity 5 69 0 299 241 0 25 chr3 137149997 137150076 -80887082 - MLT1K LTR MaLR -70 518 442 463 272 55 77 chr3 137150183 137150418 -80886740 - MLT1K LTR MaLR -290 298 69 237 324 133 12 chr3 137150500 137150673 -80886485 + MIR SINE MIR 58 251 -11 22 0 0 0 chr3 137150853 137150875 -80886283 + AT_rich Low_complexity Low_complexity 1 22 0 249 176 0 20 chr3 137151193 137151244 -80885914 + MIR SINE MIR 76 125 -137 1058 257 60 3 chr3 137151391 137151691 -80885467 + L1MC4a LINE L1 5444 5760 -2048 405 163 12 0 chr3 137151699 137151779 -80885379 - MER53 DNA DNA 0 189 109 762 194 69 56 chr3 137151840 137152056 -80885102 - MER20 DNA MER1_type 0 219 1 557 254 17 28 chr3 137152056 137152206 -80884952 + L1MC4a LINE L1 5763 5912 -1896 2226 130 73 27 chr3 137152206 137152615 -80884543 + MSTC LTR MaLR 1 428 0 557 254 17 28 chr3 137152615 137152641 -80884517 + L1MC4a LINE L1 5912 5937 -1871 283 291 55 16 chr3 137152730 137152857 -80884301 + Charlie8 DNA MER1_type 76 207 -2210 218 283 0 0 chr3 137153507 137153560 -80883598 + A-rich Low_complexity Low_complexity 2 54 0 504 276 26 13 chr3 137153716 137153872 -80883286 + MIR SINE MIR 45 202 -60 2340 92 0 10 chr3 137154845 137155150 -80882008 - AluSx SINE Alu -10 302 1 414 181 181 38 chr3 137155679 137155784 -80881374 + MIR SINE MIR 28 147 -115 302 317 58 0 chr3 137155792 137155896 -80881262 - L2 LINE L2 -1 3271 3162 948 212 106 54 chr3 137155963 137156434 -80880724 - REP3 LTR ERV -22 540 3 971 259 206 5 chr3 137156443 137157091 -80880067 - L2 LINE L2 -229 3084 2309 1627 182 10 21 chr3 137157589 137157880 -80879278 + AluJo SINE Alu 6 293 -19 2596 181 26 4 chr3 137157886 137158355 -80878803 + MLT1D LTR MaLR 27 505 0 1227 260 127 49 chr3 137158605 137159078 -80878080 - MLT1K LTR MaLR -10 578 69 455 281 226 5 chr3 137159419 137159618 -80877540 - MIR SINE MIR -15 247 5 438 313 56 12 chr3 137159685 137159934 -80877224 + MIR SINE MIR 2 261 -1 388 316 66 7 chr3 137160453 137160605 -80876553 + MIR SINE MIR 23 183 -79 555 29 0 0 chr3 137161579 137161648 -80875510 + (TG)n Simple_repeat Simple_repeat 2 70 0 306 0 0 0 chr3 137161858 137161892 -80875266 + (A)n Simple_repeat Simple_repeat 1 34 0 288 0 0 0 chr3 137162652 137162684 -80874474 + (CA)n Simple_repeat Simple_repeat 2 33 0 338 226 131 23 chr3 137162715 137162847 -80874311 - MIR3 SINE MIR -5 203 56 262 261 109 44 chr3 137164464 137164620 -80872538 - MIR SINE MIR -44 164 4 640 344 27 15 chr3 137164731 137165062 -80872096 + LTR16B LTR ERVL 129 463 -1 268 309 36 18 chr3 137165256 137165366 -80871792 + MIR SINE MIR 80 191 -71 317 344 54 32 chr3 137167909 137168095 -80869063 + L1MD3 LINE L1 5758 5947 -2048 228 135 0 0 chr3 137168417 137168454 -80868704 + (CA)n Simple_repeat Simple_repeat 2 38 0 699 249 83 33 chr3 137168678 137168919 -80868239 - MIR SINE MIR -6 256 4 519 365 29 23 chr3 137168919 137169263 -80867895 + L2 LINE L2 2922 3267 -5 228 265 109 13 chr3 137170820 137170905 -80866253 - MIR SINE MIR -82 126 33 185 290 72 0 chr3 137171405 137171474 -80865684 - MIR SINE MIR -32 230 157 496 216 63 0 chr3 137171664 137171775 -80865383 - L2 LINE L2 -5 3267 3150 187 288 51 0 chr3 137172491 137172550 -80864608 + MIR SINE MIR 88 149 -113 1047 260 27 7 chr3 137172714 137173006 -80864152 - MLT1H LTR MaLR -251 298 1 277 238 12 25 chr3 137173901 137173981 -80863177 + (TATATG)n Simple_repeat Simple_repeat 6 84 0 792 258 9 39 chr3 137174179 137174408 -80862750 - MIR SINE MIR -40 222 1 713 142 0 0 chr3 137174598 137174711 -80862447 - L1P LINE L1 -4513 1633 1521 190 264 55 44 chr3 137175230 137175321 -80861837 - L2 LINE L2 -258 3014 2923 623 178 66 7 chr3 137176156 137176308 -80860850 - LTR16C LTR ERVL 0 491 331 252 260 78 0 chr3 137176308 137176385 -80860773 + MIR SINE MIR 105 187 -75 332 318 88 46 chr3 137176893 137177110 -80860048 + MIR SINE MIR 28 253 -9 462 237 158 0 chr3 137177444 137177634 -80859524 - MIR SINE MIR -30 232 13 574 276 72 69 chr3 137180299 137180632 -80856526 + MLT1K LTR MaLR 4 337 -251 781 273 159 21 chr3 137180646 137180980 -80856178 - LTR16A LTR ERVL -4 446 67 353 161 86 43 chr3 137181108 137181201 -80855957 + MLT1K LTR MaLR 490 586 -2 323 224 75 37 chr3 137181474 137181581 -80855577 + MLT1K LTR MaLR 140 250 -338 235 214 0 18 chr3 137182820 137182876 -80854282 + G-rich Low_complexity Low_complexity 6 60 0 274 257 147 90 chr3 137183833 137184179 -80852979 + LTR16A1 LTR ERVL 89 454 -3 562 303 167 24 chr3 137184677 137185264 -80851894 + L1MC4a LINE L1 5254 5924 -1884 288 0 0 0 chr3 137185873 137185905 -80851253 + (CA)n Simple_repeat Simple_repeat 2 33 0 183 42 0 0 chr3 137185936 137185960 -80851198 + (CA)n Simple_repeat Simple_repeat 1 24 0 227 75 75 0 chr3 137186337 137186377 -80850781 + T-rich Low_complexity Low_complexity 3 45 0 1165 294 85 23 chr3 137186379 137186953 -80850205 - L1ME3A LINE L1 -9 6161 5552 310 222 49 37 chr3 137187008 137187089 -80850069 + L2 LINE L2 3212 3293 -20 463 206 6 30 chr3 137187094 137187259 -80849899 + GA-rich Low_complexity Low_complexity 4 164 0 215 231 0 0 chr3 137187791 137187830 -80849328 + (TG)n Simple_repeat Simple_repeat 2 40 0 222 319 159 29 chr3 137187952 137188159 -80848999 - MIR SINE MIR -7 255 22 238 279 98 62 chr3 137188516 137188967 -80848191 + L1M4 LINE L1 2793 3259 -2887 226 107 0 107 chr3 137189937 137189993 -80847165 - MLT1K LTR MaLR -23 565 516 244 347 17 6 chr3 137190393 137190569 -80846589 + L1MC4 LINE L1 7864 8041 -1 362 321 53 0 chr3 137191298 137191429 -80845729 + MIR SINE MIR 48 185 -77 351 0 0 0 chr3 137191883 137191922 -80845236 + (CA)n Simple_repeat Simple_repeat 2 40 0 * 369 0 0 0 chr3 137191921 137191962 -80845196 + (GA)n Simple_repeat Simple_repeat 2 42 0 1089 256 51 30 chr3 137192359 137192470 -80844688 + MER58B DNA MER1_type 1 108 -2312 2095 101 34 10 chr3 137192470 137192767 -80844391 + AluSc SINE Alu 1 304 -5 1089 256 51 30 chr3 137192767 137192987 -80844171 + MER58B DNA MER1_type 108 339 -2 239 246 18 61 chr3 137193249 137193363 -80843795 + MLT1K LTR MaLR 428 536 -13 380 298 149 10 chr3 137193511 137193800 -80843358 + L2 LINE L2 2914 3242 -71 820 258 127 37 chr3 137193854 137194319 -80842839 + L2 LINE L2 2802 3308 -5 214 138 15 169 chr3 137194811 137194876 -80842282 + MIR SINE MIR 94 148 -60 506 270 113 20 chr3 137194923 137195127 -80842031 - MIR SINE MIR -34 228 6 1099 249 68 42 chr3 137195378 137195803 -80841355 + MLT1J1 LTR MaLR 2 437 -9 219 284 198 9 chr3 137195808 137195924 -80841234 + MIR SINE MIR 119 256 -6 734 274 72 22 chr3 137196686 137197048 -80840110 - MLT1K LTR MaLR 0 588 209 769 261 185 38 chr3 137197529 137198127 -80839031 + L2 LINE L2 2326 3000 -313 372 277 0 0 chr3 137198278 137198455 -80838703 + (CA)n Simple_repeat Simple_repeat 2 178 0 260 325 50 17 chr3 137199232 137199352 -80837806 + MIR SINE MIR 20 143 -119 583 260 95 25 chr3 137199564 137199806 -80837352 - L2 LINE L2 -85 3228 2970 213 272 104 24 chr3 137200012 137200137 -80837021 - L2 LINE L2 -173 3099 2965 642 210 68 12 chr3 137200197 137200359 -80836799 + MLT1B LTR MaLR 2 172 -218 1049 179 0 0 chr3 137200362 137200530 -80836628 + FRAM SINE Alu 7 174 -2 820 230 73 0 chr3 137200557 137200748 -80836410 + MLT1B LTR MaLR 184 388 -2 551 252 27 7 chr3 137200748 137200895 -80836263 - MIR SINE MIR -79 183 34 1149 145 6 0 chr3 137201512 137201684 -80835474 + FRAM SINE Alu 1 165 -11 2253 161 17 46 chr3 137201700 137201754 -80835404 + L1MB3 LINE L1 5734 5788 -395 204 40 0 0 chr3 137201754 137201779 -80835379 + (TG)n Simple_repeat Simple_repeat 2 26 0 2253 161 17 46 chr3 137201779 137202056 -80835102 + L1MB3 LINE L1 5788 6051 -132 2143 125 0 7 chr3 137202056 137202351 -80834807 + AluSx SINE Alu 1 293 -19 2253 161 17 46 chr3 137202351 137202479 -80834679 + L1MB3 LINE L1 6051 6181 -2 495 310 96 9 chr3 137202751 137202980 -80834178 - MIR SINE MIR -6 256 8 256 247 52 13 chr3 137203235 137203312 -80833846 + MLT1K LTR MaLR 187 266 -322 1325 246 138 29 chr3 137203432 137203550 -80833608 - MLT1J LTR MaLR -6 505 401 2539 139 57 0 chr3 137203550 137203953 -80833205 - MSTB LTR MaLR 0 426 1 9382 175 17 20 chr3 137203953 137205609 -80831549 - MSTB-int LTR MaLR 0 1651 1 2717 139 42 0 chr3 137205609 137206018 -80831140 - MSTB LTR MaLR 0 426 1 1325 246 138 29 chr3 137206018 137206352 -80830806 - MLT1J LTR MaLR -109 402 1 372 321 53 8 chr3 137206387 137206518 -80830640 + L2 LINE L2 3134 3270 -2 6500 178 195 38 chr3 137206536 137208051 -80829107 + MER52A LTR ERV1 1 1753 -2 1214 237 105 82 chr3 137208051 137208633 -80828525 - MLT1G1 LTR MaLR 0 595 1 385 299 0 75 chr3 137208880 137209027 -80828131 + MER5B DNA MER1_type 1 136 -42 2256 110 3 0 chr3 137209273 137209563 -80827595 + AluSp SINE Alu 1 291 -22 213 211 0 0 chr3 137210552 137210609 -80826549 + (CAT)n Simple_repeat Simple_repeat 3 59 0 241 280 25 17 chr3 137210622 137210740 -80826418 + L1ME3 LINE L1 1350 1468 -4955 358 322 7 49 chr3 137210746 137210889 -80826269 + L1ME3 LINE L1 1647 1783 -5158 1368 240 48 21 chr3 137210890 137211367 -80825791 + MER119 DNA MER1_type 1 583 0 249 280 87 14 chr3 137211369 137211576 -80825582 + L1ME3 LINE L1 1790 2011 -4920 626 233 26 0 chr3 137211576 137211692 -80825466 + FLAM_C SINE Alu 2 120 -23 189 0 0 0 chr3 137211692 137211713 -80825445 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 744 315 40 7 chr3 137211713 137212157 -80825001 + L1ME3 LINE L1 2043 2501 -4621 794 314 81 9 chr3 137212433 137212755 -80824403 + L1M4b LINE L1 103 447 -6412 316 214 71 71 chr3 137212746 137212872 -80824286 + L1M4b LINE L1 1263 1388 -5471 * 1609 260 80 53 chr3 137212888 137213716 -80823442 + L1M4b LINE L1 1355 2220 -4739 1794 176 7 0 chr3 137213716 137214000 -80823158 - AluSx SINE Alu -26 286 1 1609 260 80 53 chr3 137214000 137214256 -80822902 + L1M4b LINE L1 2220 2468 -4491 992 176 6 0 chr3 137214264 137214423 -80822735 + FRAM SINE Alu 1 158 -18 7246 216 91 26 chr3 137214585 137215170 -80821988 + L1M4b LINE L1 2619 3165 -3792 2599 61 0 0 chr3 137215170 137215481 -80821677 + AluY SINE Alu 1 311 0 7246 216 91 26 chr3 137215481 137217203 -80819955 + L1M4b LINE L1 3165 5057 -1900 2100 149 3 0 chr3 137217203 137217511 -80819647 + AluSx SINE Alu 3 311 -1 7246 216 91 26 chr3 137217511 137217607 -80819551 + L1M4b LINE L1 5057 5145 -1812 2049 141 7 0 chr3 137217607 137217898 -80819260 + AluSx SINE Alu 2 294 -18 600 169 30 42 chr3 137217907 137218073 -80819085 - L1MC3 LINE L1 0 7785 7622 1700 202 7 38 chr3 137218261 137218707 -80818451 + L1M4b LINE L1 5131 5562 -1395 1438 272 83 36 chr3 137218702 137218809 -80818349 + L1ME3 LINE L1 3907 4008 -2933 * 2020 113 8 0 chr3 137218809 137219075 -80818083 + AluSq SINE Alu 1 268 -45 1438 272 83 36 chr3 137219075 137220864 -80816294 + L1ME3 LINE L1 4008 5951 -990 507 66 13 2 chr3 137220908 137220984 -80816174 + MSTC LTR MaLR 1 65 -363 1247 156 109 55 chr3 137221023 137221507 -80815651 - LTR49 LTR ERV1 -51 736 1 2382 98 5 53 chr3 137221509 137221657 -80815501 + MSTC LTR MaLR 66 220 -208 419 91 212 0 chr3 137221657 137221723 -80815435 - MADE1 DNA Mariner 0 80 1 2382 98 5 53 chr3 137221723 137221951 -80815207 + MSTC LTR MaLR 220 424 -4 2150 249 30 37 chr3 137222002 137222824 -80814334 + L1ME3 LINE L1 5945 6757 -208 238 296 65 53 chr3 137222882 137223051 -80814107 + L1ME3 LINE L1 6756 6926 -31 2600 182 32 11 chr3 137223168 137223636 -80813522 + MER66A LTR ERV1 1 478 0 2476 84 0 0 chr3 137223728 137224027 -80813131 + AluSq SINE Alu 1 299 -14 181 231 19 19 chr3 137224244 137224296 -80812862 - L2 LINE L2 0 3313 3262 574 207 150 10 chr3 137224408 137224601 -80812557 - L1ME4a LINE L1 0 6121 5902 325 302 0 75 chr3 137224619 137224725 -80812433 + L1MC4 LINE L1 6608 6705 -1337 * 387 270 67 0 chr3 137224639 137224728 -80812430 - L1MC4 LINE L1 -1339 6703 6609 2049 149 3 0 chr3 137224734 137225030 -80812128 - AluJo SINE Alu -15 297 1 18263 48 0 0 chr3 137225058 137228207 -80808951 + L1PA5 LINE L1 3003 6152 -2 253 220 0 0 chr3 137229538 137229588 -80807570 + LTR67 LTR ERVL 14 63 -494 321 223 11 21 chr3 137230080 137230174 -80806984 + LTR67 LTR ERVL 460 552 -5 2219 95 0 14 chr3 137230329 137230614 -80806544 - AluSq SINE Alu -32 281 1 619 194 134 0 chr3 137231321 137231455 -80805703 + AluJb SINE Alu 161 312 0 3349 108 38 51 chr3 137231455 137231815 -80805343 + Tigger3(Golem) DNA MER2_type 2425 2775 -253 2186 127 0 25 chr3 137231815 137232130 -80805028 - AluSx SINE Alu -5 307 1 3349 108 38 51 chr3 137232130 137232381 -80804777 + Tigger3(Golem) DNA MER2_type 2775 3028 0 2300 155 56 17 chr3 137233300 137233783 -80803375 + L1MB2 LINE L1 5668 6169 -2 1246 270 38 53 chr3 137234230 137234831 -80802327 - L1ME4a LINE L1 -211 5910 5319 312 208 56 0 chr3 137235491 137235563 -80801595 + MLT1B LTR MaLR 11 86 -304 495 189 11 0 chr3 137235564 137235654 -80801504 + MER44D DNA MER2_type 1 91 -614 1096 128 153 35 chr3 137235654 137235857 -80801301 + AluJo SINE Alu 86 312 0 2587 199 74 20 chr3 137235857 137236449 -80800709 + MER44D DNA MER2_type 82 705 0 762 161 75 23 chr3 137236450 137236624 -80800534 + MLT1B LTR MaLR 87 269 -121 767 318 64 35 chr3 137236886 137237371 -80799787 - L2 LINE L2 0 3313 2815 202 298 60 36 chr3 137237486 137237570 -80799588 + MIR SINE MIR 20 105 -157 881 240 87 60 chr3 137237624 137237990 -80799168 + LTR16A LTR ERVL 69 444 -6 200 354 89 0 chr3 137238037 137238116 -80799042 + MIR SINE MIR 174 259 -3 1123 252 84 0 chr3 137238282 137238556 -80798602 + MLT1J LTR MaLR 8 304 -207 194 198 12 123 chr3 137238606 137238687 -80798471 + MIR SINE MIR 74 145 -63 1487 253 82 18 chr3 137239677 137240176 -80796982 + L1MDa LINE L1 19 549 -5991 4339 208 68 60 chr3 137240177 137240944 -80796214 + L1MDa LINE L1 982 1742 -4798 2259 124 0 0 chr3 137240944 137241251 -80795907 + AluSx SINE Alu 1 307 -5 2226 81 0 0 chr3 137241253 137241525 -80795633 + AluY SINE Alu 1 272 -39 4339 208 68 60 chr3 137241525 137242176 -80794982 + L1MDa LINE L1 1742 2414 -4126 255 284 37 0 chr3 137242728 137242798 -80794360 + MLT1G LTR MaLR 1 73 -522 2050 178 65 5 chr3 137242798 137243215 -80793943 - MSTB2 LTR MaLR 0 457 16 747 241 175 33 chr3 137243273 137243690 -80793468 + MLT1G LTR MaLR 34 572 0 1170 65 0 0 chr3 137243753 137243892 -80793266 - AluSg/x SINE Alu -6 306 168 1431 270 133 0 chr3 137244600 137245097 -80792061 + L1MD3 LINE L1 7425 7987 -8 918 260 37 14 chr3 137245391 137245687 -80791471 - Charlie7 DNA MER1_type -1988 624 322 292 264 57 9 chr3 137245794 137245900 -80791258 - Charlie7 DNA MER1_type -2444 168 58 607 262 24 12 chr3 137248374 137248542 -80788616 - MIR SINE MIR 0 262 93 274 253 0 89 chr3 137248540 137248619 -80788539 + L2 LINE L2 3205 3276 -37 * 188 125 0 0 chr3 137249507 137249539 -80787619 + L2 LINE L2 3282 3313 0 544 276 26 0 chr3 137249770 137249926 -80787232 - L1MD2 LINE L1 -10 6349 6190 414 233 114 26 chr3 137250272 137250465 -80786693 - LTR16A LTR ERVL -1 449 240 1485 218 67 6 chr3 137250622 137250990 -80786168 + MLT2D LTR ERVL 1 533 -21 347 342 36 5 chr3 137251188 137251330 -80785828 - L2 LINE L2 -623 2691 2538 1952 149 10 10 chr3 137251330 137251625 -80785533 + AluJo SINE Alu 1 295 -17 347 342 36 5 chr3 137251625 137251704 -80785454 - L2 LINE L2 -776 2538 2463 187 219 0 0 chr3 137252394 137252435 -80784723 + MIR3 SINE MIR 114 154 -54 194 152 0 22 chr3 137252499 137252545 -80784613 + (CAGA)n Simple_repeat Simple_repeat 1 45 0 1360 123 9 6 chr3 137253535 137253875 -80783283 + MER57B LTR ERV1 1 434 0 768 275 135 15 chr3 137253876 137254412 -80782746 - L2 LINE L2 -252 3061 2462 449 276 41 29 chr3 137255667 137255837 -80781321 - L2 LINE L2 -249 3064 2893 286 275 53 38 chr3 137256141 137256272 -80780886 + Charlie8 DNA MER1_type 28 160 -2257 190 141 266 16 chr3 137256783 137256847 -80780311 + MIR SINE MIR 58 137 -71 457 274 113 6 chr3 137256918 137257086 -80780072 + MIR SINE MIR 37 222 -40 278 272 0 41 chr3 137257886 137258033 -80779125 + (CTGGGG)n Simple_repeat Simple_repeat 1 141 0 597 179 0 53 chr3 137258189 137258379 -80778779 + C-rich Low_complexity Low_complexity 1 180 0 219 241 0 0 chr3 137258754 137258812 -80778346 + MIR SINE MIR 109 166 -96 2131 118 0 34 chr3 137258958 137259279 -80777879 + AluJb SINE Alu 1 310 -2 2179 101 3 49 chr3 137259393 137259701 -80777457 - AluSc SINE Alu -15 294 1 766 241 60 37 chr3 137259807 137260023 -80777135 - MER58A DNA MER1_type -3 221 1 874 286 136 28 chr3 137260029 137260244 -80776914 + L1MC4a LINE L1 5262 5453 -2355 306 0 0 0 chr3 137260244 137260278 -80776880 + (TG)n Simple_repeat Simple_repeat 2 35 0 874 286 136 28 chr3 137260278 137260593 -80776565 + L1MC4a LINE L1 5453 5849 -1959 189 245 41 0 chr3 137260649 137260698 -80776460 + L2 LINE L2 3237 3287 -26 339 65 0 0 chr3 137260698 137260744 -80776414 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 285 267 37 80 chr3 137260819 137261006 -80776152 + L1MC4a LINE L1 5877 6055 -1753 183 42 0 0 chr3 137261244 137261268 -80775890 + (TG)n Simple_repeat Simple_repeat 1 24 0 288 0 0 0 chr3 137261299 137261331 -80775827 + (TG)n Simple_repeat Simple_repeat 2 33 0 277 303 61 0 chr3 137261829 137261928 -80775230 + MIR SINE MIR 81 185 -77 2315 100 7 0 chr3 137362246 137362545 -80674613 - AluSx SINE Alu -11 301 1 541 374 106 22 chr3 137362560 137363108 -80674050 + L1ME4a LINE L1 5388 5981 -140 2245 123 3 3 chr3 137363108 137363417 -80673741 + AluSx SINE Alu 1 309 -3 1030 137 62 0 chr3 137363417 137363578 -80673580 + AluSg/x SINE Alu 126 296 -16 355 263 102 8 chr3 137363580 137363698 -80673460 + L1ME4a LINE L1 5974 6102 -19 279 306 89 61 chr3 137363998 137364178 -80672980 + MIR SINE MIR 22 206 -56 359 272 75 72 chr3 137364366 137364712 -80672446 + MLT1K LTR MaLR 227 573 -15 302 350 35 0 chr3 137364999 137365142 -80672016 - MIR3 SINE MIR -3 205 58 427 264 17 38 chr3 137365343 137365500 -80671658 + MIR SINE MIR 43 196 -60 2157 115 7 7 chr3 137365515 137365810 -80671348 + AluSg SINE Alu 1 295 -15 438 306 111 19 chr3 137365898 137366114 -80671044 + MIR SINE MIR 21 256 -6 320 311 130 40 chr3 137366546 137366723 -80670435 - MER91A DNA MER1_type -3 193 1 199 365 21 28 chr3 137366743 137366888 -80670270 - L2 LINE L2 -225 3047 2904 266 348 0 0 chr3 137366891 137366980 -80670178 + MIR SINE MIR 38 126 -82 208 208 0 38 chr3 137367535 137367588 -80669570 + GA-rich Low_complexity Low_complexity 5 55 0 1779 152 22 0 chr3 137367790 137368104 -80669054 + AluSx SINE Alu 1 320 0 543 283 94 6 chr3 137368125 137368305 -80668853 - MIR SINE MIR -8 254 59 205 286 92 34 chr3 137368428 137368634 -80668524 - L2 LINE L2 -1034 2280 2063 214 255 0 0 chr3 137368715 137368762 -80668396 - L2 LINE L2 -33 3239 3193 2350 75 41 85 chr3 137368921 137369233 -80667925 + MER48 LTR ERV1 16 309 -78 3025 6 0 0 chr3 137369233 137369550 -80667608 + AluYb8 SINE Alu 1 317 -1 2350 75 41 85 chr3 137369550 137369626 -80667532 + MER48 LTR ERV1 309 387 0 460 269 123 6 chr3 137369629 137369800 -80667358 + MLT1I LTR MaLR 4 194 -215 1934 146 3 17 chr3 137370848 137371136 -80666022 - AluSx SINE Alu -20 292 9 2213 115 7 3 chr3 137371844 137372149 -80665009 + AluSx SINE Alu 1 306 -6 1019 106 0 8 chr3 137372149 137372281 -80664877 - AluSq/x SINE Alu -181 131 1 1133 186 24 16 chr3 137372740 137372992 -80664166 + L1MC4 LINE L1 7420 7673 -369 326 320 198 18 chr3 137373208 137373430 -80663728 + MIR SINE MIR 1 262 0 231 191 59 15 chr3 137373476 137373544 -80663614 - LTR16A1 LTR ERVL -98 359 289 366 244 106 8 chr3 137373990 137374113 -80663045 - Charlie8 DNA MER1_type -2242 175 41 256 286 136 14 chr3 137375099 137375239 -80661919 + MIR SINE MIR 57 213 -49 2250 99 3 0 chr3 137375361 137375665 -80661493 + AluSp SINE Alu 1 305 -8 1656 171 67 3 chr3 137376655 137377012 -80660146 + L1MB3 LINE L1 5762 6141 -42 1722 158 21 0 chr3 137377012 137377141 -80660017 + AluJo SINE Alu 1 126 -196 2113 112 0 16 chr3 137377141 137377453 -80659705 + AluSc SINE Alu 1 307 -2 1722 158 21 0 chr3 137377453 137377639 -80659519 + AluJo SINE Alu 126 322 0 719 108 217 0 chr3 137377642 137377782 -80659376 + AluSq SINE Alu 137 302 0 240 63 0 159 chr3 137377782 137377805 -80659353 + L1MB2 LINE L1 6118 6143 -28 2125 91 42 0 chr3 137377805 137378092 -80659066 + AluSc SINE Alu 1 299 -10 240 63 0 159 chr3 137378092 137378131 -80659027 + L1MB2 LINE L1 6143 6170 -1 195 326 177 20 chr3 137378500 137378647 -80658511 - MIR SINE MIR -91 171 2 1387 179 151 9 chr3 137378918 137379434 -80657724 + L1M4 LINE L1 5112 5686 -480 2223 102 3 0 chr3 137379437 137379732 -80657426 + AluSp SINE Alu 1 296 -17 1071 273 80 29 chr3 137379732 137380198 -80656960 - MLT1F1 LTR MaLR -30 537 41 395 255 116 1 chr3 137380599 137380834 -80656324 + MLT1F1 LTR MaLR 5 304 -263 232 303 35 28 chr3 137380886 137381028 -80656130 - MLT1J LTR MaLR -104 407 265 2117 304 79 20 chr3 137381178 137382377 -80654781 - HERVL LTR ERVL -2207 3447 2113 203 350 60 0 chr3 137382573 137382673 -80654485 - L2 LINE L2 0 3313 3208 1967 71 50 62 chr3 137382810 137383133 -80654025 + MER48 LTR ERV1 4 322 -65 2730 13 0 6 chr3 137383133 137383449 -80653709 + AluYb8 SINE Alu 1 314 -4 200 310 80 26 chr3 137384331 137384444 -80652714 + MIR3 SINE MIR 89 207 -1 272 311 0 38 chr3 137385117 137385223 -80651935 + CT-rich Low_complexity Low_complexity 1 102 0 2192 104 0 7 chr3 137385518 137385827 -80651331 + AluSc SINE Alu 1 307 -2 2287 186 31 62 chr3 137385863 137386503 -80650655 - L1MC4 LINE L1 -3 8039 7420 2143 102 13 13 chr3 137387171 137387475 -80649683 + AluSx SINE Alu 1 304 -8 3898 126 48 8 chr3 137387660 137388286 -80648872 + MER39B LTR ERV1 3 653 0 394 226 15 92 chr3 137389822 137390004 -80647154 + MIR SINE MIR 4 175 -79 387 258 64 39 chr3 137390236 137390415 -80646743 - MIR SINE MIR -29 233 47 803 214 123 0 chr3 137390896 137391083 -80646075 + MER58A DNA MER1_type 4 213 -11 194 308 15 15 chr3 137392146 137392211 -80644947 - MIR SINE MIR -68 140 76 748 281 181 32 chr3 137393847 137393998 -80643160 - L2 LINE L2 -26 3287 3160 1949 147 0 35 chr3 137393998 137394317 -80642841 + AluJb SINE Alu 3 310 -2 748 281 181 32 chr3 137394317 137394858 -80642300 - L2 LINE L2 -153 3160 2476 224 140 40 0 chr3 137394896 137394946 -80642212 + (CACG)n Simple_repeat Simple_repeat 4 55 0 239 100 57 14 chr3 137396666 137396736 -80640422 + (CCCCG)n Simple_repeat Simple_repeat 2 74 0 28 0 0 0 chr3 137396827 137396855 -80640303 + GC_rich Low_complexity Low_complexity 1 28 0 502 298 60 0 chr3 137399248 137399399 -80637759 + MIR SINE MIR 2 161 -101 384 22 0 0 chr3 137401450 137401495 -80635663 + (CA)n Simple_repeat Simple_repeat 2 46 0 1340 197 23 11 chr3 137402888 137403152 -80634006 + AluJb SINE Alu 1 267 -45 238 287 0 101 chr3 137403168 137403297 -80633861 + MIR SINE MIR 51 166 -96 361 213 8 47 chr3 137403305 137403432 -80633726 + L1M4 LINE L1 4891 5012 -1134 1028 223 98 3 chr3 137403466 137403762 -80633396 + L1MC4 LINE L1 6565 6888 -1154 1292 201 14 20 chr3 137404313 137404661 -80632497 + L1MC4 LINE L1 7553 7898 -144 354 25 3 18 chr3 137404745 137404805 -80632353 + L1ME LINE L1 5390 5450 -712 2076 115 3 3 chr3 137404926 137405222 -80631936 + AluSg SINE Alu 6 301 -9 433 243 14 91 chr3 137405222 137405432 -80631726 - LTR33 LTR ERVL 0 521 328 787 256 84 13 chr3 137405705 137405943 -80631215 + MIR SINE MIR 8 262 0 21 21 0 64 chr3 137406067 137406114 -80631044 + AT_rich Low_complexity Low_complexity 1 44 0 2112 129 3 3 chr3 137406126 137406420 -80630738 - AluSx SINE Alu -17 295 2 1979 141 0 13 chr3 137406538 137406850 -80630308 - AluJb SINE Alu -4 308 1 328 282 27 7 chr3 137406857 137407006 -80630152 - L1 LINE L1 -1112 5034 4883 1778 152 20 0 chr3 137407020 137407317 -80629841 - AluSx SINE Alu -9 303 1 208 208 0 38 chr3 137407519 137407572 -80629586 + CT-rich Low_complexity Low_complexity 5 55 0 295 366 24 0 chr3 137408093 137408216 -80628942 - MIR3 SINE MIR -45 163 38 235 379 20 26 chr3 137408219 137408372 -80628786 + L2 LINE L2 2904 3055 -217 401 293 127 44 chr3 137408384 137408565 -80628593 + MER91A DNA MER1_type 1 196 0 440 310 111 19 chr3 137408995 137409211 -80627947 - MIR SINE MIR -6 256 21 2183 104 0 10 chr3 137409299 137409597 -80627561 - AluSg SINE Alu -15 295 1 465 270 17 37 chr3 137409608 137409769 -80627389 - MIR SINE MIR -60 148 43 314 350 35 0 chr3 137409970 137410113 -80627045 + MIR3 SINE MIR 58 205 -3 348 292 55 52 chr3 137410400 137410746 -80626412 - MLT1K LTR MaLR -15 573 227 282 306 89 61 chr3 137410934 137411114 -80626044 - MIR SINE MIR -56 206 22 427 256 120 8 chr3 137411399 137411532 -80625626 - L1ME4a LINE L1 0 6121 5974 953 138 63 0 chr3 137411534 137411693 -80625465 - AluSg/x SINE Alu -16 294 126 2180 123 3 0 chr3 137411695 137412003 -80625155 - AluSx SINE Alu -3 309 1 709 388 97 15 chr3 137412003 137412552 -80624606 - L1ME4a LINE L1 -140 5981 5388 2139 120 0 0 chr3 137412567 137412859 -80624299 + AluSx SINE Alu 1 292 -20 217 384 92 32 chr3 137412945 137413356 -80623802 + L3 LINE CR1 514 949 -628 202 143 24 0 chr3 137413548 137413590 -80623568 + T-rich Low_complexity Low_complexity 6 48 0 21 57 0 0 chr3 137413864 137413899 -80623259 + AT_rich Low_complexity Low_complexity 1 35 0 232 308 0 0 chr3 137414613 137414665 -80622493 - L2 LINE L2 -18 3295 3244 209 295 197 16 chr3 137414661 137414783 -80622375 - MIR SINE MIR 0 262 119 * 203 309 241 0 chr3 137416048 137416210 -80620948 + MIR SINE MIR 58 258 -4 426 314 48 0 chr3 137416640 137416764 -80620394 + L2 LINE L2 3184 3313 0 21 0 0 0 chr3 137416764 137416785 -80620373 + AT_rich Low_complexity Low_complexity 1 21 0 192 231 0 0 chr3 137416866 137416918 -80620240 + (TA)n Simple_repeat Simple_repeat 2 53 0 306 311 0 0 chr3 137416955 137417132 -80620026 + (TG)n Simple_repeat Simple_repeat 1 177 0 298 238 83 83 chr3 137418423 137418604 -80618554 + MER5A DNA MER1_type 4 184 -5 470 296 70 0 chr3 137419507 137419649 -80617509 + MIR SINE MIR 111 262 0 443 284 35 20 chr3 137419812 137420009 -80617149 + MLT1K LTR MaLR 84 283 -305 372 299 125 27 chr3 137420300 137420524 -80616634 - MIR SINE MIR 0 262 17 190 195 98 0 chr3 137420654 137420695 -80616463 + L2 LINE L2 3265 3309 -4 864 261 116 6 chr3 137421481 137421818 -80615340 + MLT1K LTR MaLR 191 564 -24 196 264 368 0 chr3 137422565 137422671 -80614487 + MIR SINE MIR 8 152 -110 264 297 97 0 chr3 137423379 137423524 -80613634 + L1ME3A LINE L1 5759 5917 -245 320 231 0 0 chr3 137423604 137423669 -80613489 + L1ME3A LINE L1 6057 6121 -49 2298 100 3 31 chr3 137423720 137424040 -80613118 + AluSx SINE Alu 1 311 -1 993 133 0 0 chr3 137424373 137424508 -80612650 + AluJo SINE Alu 1 135 -177 2256 107 0 3 chr3 137424508 137424808 -80612350 + AluSx SINE Alu 1 299 -13 2328 100 0 34 chr3 137424808 137424951 -80612207 + AluSp SINE Alu 1 147 -166 2330 93 3 7 chr3 137424951 137425253 -80611905 + AluSp SINE Alu 1 301 -12 2328 100 0 34 chr3 137425253 137425430 -80611728 + AluSp SINE Alu 147 310 -3 2028 142 0 28 chr3 137425536 137425853 -80611305 + AluJo SINE Alu 5 312 0 513 274 55 0 chr3 137425925 137426089 -80611069 + MLT1J LTR MaLR 5 177 -334 472 291 8 0 chr3 137426264 137426391 -80610767 + MLT1J LTR MaLR 237 364 -147 551 310 147 30 chr3 137426547 137427068 -80610090 - L2 LINE L2 -280 3033 2429 243 248 60 43 chr3 137427109 137427226 -80609932 + MLT1L LTR MaLR 41 159 -456 281 154 19 0 chr3 137427305 137427357 -80609801 + MER20B DNA MER1_type 103 155 -628 1899 153 0 47 chr3 137427733 137428034 -80609124 - AluSx SINE Alu -25 287 1 832 306 67 46 chr3 137428287 137428855 -80608303 + MLT1K LTR MaLR 9 588 0 344 309 171 0 chr3 137428855 137429007 -80608151 + MIR SINE MIR 29 206 -56 1205 75 0 0 chr3 137429046 137429193 -80607965 - AluSg/x SINE Alu -6 304 158 190 237 356 0 chr3 137429376 137429494 -80607664 - MIR SINE MIR -88 174 15 321 219 219 55 chr3 137429574 137429720 -80607438 - MER5A DNA MER1_type -6 183 14 2470 99 0 0 chr3 137429794 137430096 -80607062 - AluSx SINE Alu -10 302 1 361 293 36 21 chr3 137430120 137430260 -80606898 - MIR SINE MIR -19 243 102 28 0 0 0 chr3 137431810 137431838 -80605320 + GC_rich Low_complexity Low_complexity 1 28 0 391 288 59 0 chr3 137432670 137432788 -80604370 - MIR SINE MIR -79 183 59 191 307 57 11 chr3 137432888 137432976 -80604182 + L2 LINE L2 2863 2954 -318 431 269 123 6 chr3 137433493 137433664 -80603494 - MLT1I LTR MaLR -215 194 4 580 66 0 0 chr3 137433667 137433743 -80603415 - MER48 LTR ERV1 0 387 312 1000 141 0 5 chr3 137433743 137433942 -80603216 - AluYb8 SINE Alu -1 317 120 552 278 65 44 chr3 137437050 137437297 -80599861 - MIR SINE MIR -11 251 10 744 245 40 54 chr3 137437575 137437853 -80599305 - MLT1E2 LTR MaLR -232 394 121 225 268 72 26 chr3 137437877 137438030 -80599128 - L2 LINE L2 -312 3001 2842 1233 188 52 87 chr3 137438251 137438618 -80598540 + MLT1B LTR MaLR 37 390 0 262 238 36 36 chr3 137438924 137439008 -80598150 + MLT1J LTR MaLR 97 180 -331 1540 131 0 0 chr3 137439045 137439251 -80597907 + AluSc SINE Alu 1 206 -103 1148 188 5 10 chr3 137439452 137439659 -80597499 + L1MC/D LINE L1 17 222 -6318 6310 162 62 42 chr3 137439669 137441082 -80596076 + L1MC/D LINE L1 984 2367 -4173 1628 196 14 10 chr3 137441082 137441378 -80595780 + AluJb SINE Alu 1 297 -15 1743 122 114 8 chr3 137441380 137441633 -80595525 + AluSg SINE Alu 1 284 -26 183 42 0 0 chr3 137441633 137441657 -80595501 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 6310 162 62 42 chr3 137441665 137441882 -80595276 + L1MC/D LINE L1 2367 2650 -3890 3114 230 39 38 chr3 137442002 137442409 -80594749 + L1MC/D LINE L1 4665 5070 -1470 740 207 0 15 chr3 137442409 137442544 -80594614 + FLAM_C SINE Alu 1 133 0 3114 230 39 38 chr3 137442544 137443194 -80593964 + L1MC/D LINE L1 5070 5723 -817 530 158 0 0 chr3 137443194 137443289 -80593869 + AluJ/FRAM SINE Alu 217 311 -1 2078 124 3 7 chr3 137443311 137443609 -80593549 + AluSx SINE Alu 5 301 -11 2399 165 33 12 chr3 137443624 137444103 -80593055 + L1MC/D LINE L1 5711 6199 -437 2480 186 77 72 chr3 137444297 137445073 -80592085 + L1ME2 LINE L1 5385 6164 0 2006 150 10 3 chr3 137445650 137445957 -80591201 - AluSx SINE Alu -3 309 1 1284 272 48 50 chr3 137446974 137447621 -80589537 + HAL1b LINE L1 1 646 -702 2069 115 14 3 chr3 137447735 137448021 -80589137 + AluSx SINE Alu 1 289 -23 1365 179 0 0 chr3 137448305 137448517 -80588641 + AluSx SINE Alu 1 212 -100 874 103 0 0 chr3 137448518 137448635 -80588523 + AluSg/x SINE Alu 79 195 -117 4029 102 9 46 chr3 137449214 137449849 -80587309 + L1PA16 LINE L1 5555 6166 0 502 239 119 21 chr3 137450063 137450306 -80586852 - L1ME4a LINE L1 -9 6112 5846 393 306 22 0 chr3 137450430 137450564 -80586594 - MER117 DNA MER1_type -9 188 52 2021 120 10 14 chr3 137451894 137452186 -80584972 - AluJb SINE Alu -21 291 1 285 314 88 25 chr3 137453482 137453662 -80583496 - MIR3 SINE MIR -65 197 6 1225 258 67 33 chr3 137454150 137454630 -80582528 + MLT1J LTR MaLR 9 446 0 484 242 150 33 chr3 137454664 137454817 -80582341 + MIR SINE MIR 37 207 -55 2419 93 0 0 chr3 137455295 137455596 -80581562 + AluSq SINE Alu 1 301 -12 2362 101 3 0 chr3 137455610 137455917 -80581241 + AluSq SINE Alu 1 308 -5 277 137 74 11 chr3 137456012 137456107 -80581051 + (TA)n Simple_repeat Simple_repeat 2 102 0 450 237 86 36 chr3 137456239 137456378 -80580780 - L2 LINE L2 -6 3307 3162 2235 120 0 0 chr3 137457262 137457554 -80579604 - AluSx SINE Alu -19 293 2 430 399 6 0 chr3 137458304 137458467 -80578691 + G-rich Low_complexity Low_complexity 3 166 0 26 30 0 0 chr3 137458636 137458669 -80578489 + GC_rich Low_complexity Low_complexity 1 33 0 341 230 22 38 chr3 137458844 137459162 -80577996 + (CA)n Simple_repeat Simple_repeat 1 312 0 1038 126 86 0 chr3 137459198 137459349 -80577809 + AluSg/x SINE Alu 130 293 -17 2263 80 55 0 chr3 137460191 137460480 -80576678 + AluSx SINE Alu 1 305 -7 605 115 31 0 chr3 137460657 137460753 -80576405 - L1MD1 LINE L1 0 6242 6144 2416 113 32 8 chr3 137460859 137461231 -80575927 + MSTA LTR MaLR 48 428 0 255 314 131 26 chr3 137461564 137461717 -80575441 + MIR SINE MIR 70 238 -24 320 203 25 13 chr3 137461814 137461893 -80575265 + Charlie8 DNA MER1_type 92 171 -2246 491 301 86 22 chr3 137462062 137462331 -80574827 + Charlie8 DNA MER1_type 2 287 -2130 540 345 137 30 chr3 137462331 137462990 -80574168 - L2 LINE L2 -848 2466 1738 * 631 303 92 21 chr3 137462979 137463217 -80573941 + MIR SINE MIR 8 262 0 1879 215 76 34 chr3 137463563 137464089 -80573069 + MLT1H LTR MaLR 2 549 0 321 331 62 0 chr3 137464875 137465005 -80572153 - MIR SINE MIR -90 172 35 267 264 45 27 chr3 137465070 137465180 -80571978 - MER113 DNA MER1_type? -382 139 28 283 221 65 13 chr3 137465305 137465382 -80571776 + MIR3 SINE MIR 105 185 -23 351 0 0 0 chr3 137465989 137466028 -80571130 + (TG)n Simple_repeat Simple_repeat 2 40 0 809 274 87 5 chr3 137466093 137466312 -80570846 + MIR SINE MIR 9 245 -17 411 329 43 0 chr3 137466476 137466616 -80570542 - MIR3 SINE MIR -16 192 47 272 286 38 9 chr3 137467097 137467202 -80569956 + LTR67 LTR ERVL 425 532 -25 283 333 94 57 chr3 137467663 137467855 -80569303 - L2 LINE L2 -1 3271 3073 514 230 171 7 chr3 137468109 137468261 -80568897 + MER5A DNA MER1_type 11 187 -2 675 146 0 130 chr3 137468446 137468562 -80568596 - MER53 DNA DNA 0 189 104 2246 110 0 0 chr3 137468562 137468852 -80568306 - AluSx SINE Alu -20 292 3 675 146 0 130 chr3 137468852 137468920 -80568238 - MER53 DNA DNA -85 104 29 808 245 48 119 chr3 137469186 137469339 -80567819 + L1ME2 LINE L1 4944 5106 -1064 3641 150 16 39 chr3 137469339 137469991 -80567167 + L1MA7 LINE L1 5622 6259 -32 2099 139 0 0 chr3 137469991 137470285 -80566873 + AluSx SINE Alu 1 294 -18 3641 150 16 39 chr3 137470285 137470317 -80566841 + L1MA7 LINE L1 6259 6290 -1 808 245 48 119 chr3 137470317 137470563 -80566595 + L1ME2 LINE L1 5106 5322 -848 2045 97 16 72 chr3 137470563 137470884 -80566274 + AluSq SINE Alu 1 303 -10 808 245 48 119 chr3 137470884 137470986 -80566172 + L1ME2 LINE L1 5322 5430 -740 304 289 49 87 chr3 137471220 137471507 -80565651 + L1ME2 LINE L1 5740 6015 -149 239 213 24 63 chr3 137471523 137471650 -80565508 + A-rich Low_complexity Low_complexity 2 123 0 2440 88 3 0 chr3 137471755 137472060 -80565098 + AluSp SINE Alu 1 306 -7 1020 144 33 0 chr3 137472060 137472213 -80564945 + AluSg/x SINE Alu 132 289 -21 539 182 69 43 chr3 137472739 137472903 -80564255 + Tigger4(Zombi) DNA MER2_type 2 2546 -185 577 114 34 0 chr3 137472903 137472991 -80564167 + AluS SINE Alu 2 92 -221 287 253 20 10 chr3 137474047 137474146 -80563012 + (TA)n Simple_repeat Simple_repeat 1 100 0 1372 211 66 34 chr3 137474179 137474510 -80562648 + MER97a DNA MER1_type? 241 587 -307 1795 108 4 16 chr3 137474510 137474782 -80562376 - AluSx SINE Alu 0 312 54 1372 211 66 34 chr3 137474782 137474830 -80562328 + MER97a DNA MER1_type? 587 632 -262 367 226 164 53 chr3 137474840 137475048 -80562110 + MER97c DNA MER1_type? 819 1049 -41 2005 143 13 0 chr3 137475057 137475364 -80561794 + AluSp SINE Alu 1 311 -2 2295 265 133 38 chr3 137475480 137476735 -80560423 + HAL1 LINE L1 125 1498 -1009 2081 172 35 57 chr3 137476744 137477232 -80559926 - MLT1D LTR MaLR 0 505 29 1075 166 28 0 chr3 137477241 137477458 -80559700 - MSTB1 LTR MaLR -24 408 186 947 313 48 23 chr3 137477459 137477941 -80559217 + HAL1 LINE L1 1513 2006 -501 187 300 83 0 chr3 137478026 137478086 -80559072 - L2 LINE L2 0 3313 3249 1716 117 7 32 chr3 137478089 137478371 -80558787 - L1PA15 LINE L1 0 6165 5891 296 290 65 0 chr3 137478764 137478871 -80558287 - L1ME3A LINE L1 -13 6157 6044 299 265 162 51 chr3 137479386 137479464 -80557694 + L1ME4a LINE L1 5560 5628 -493 2312 128 0 0 chr3 137479464 137479776 -80557382 + AluSx SINE Alu 1 312 0 299 265 162 51 chr3 137479776 137479931 -80557227 + L1ME4a LINE L1 5628 5819 -302 1104 219 89 37 chr3 137480005 137480440 -80556718 - MLT1E2 LTR MaLR 0 626 60 296 271 24 0 chr3 137480472 137480557 -80556601 - MER58B DNA MER1_type -49 292 206 1783 119 28 0 chr3 137481093 137481344 -80555814 + AluSx SINE Alu 49 306 -6 487 236 64 6 chr3 137481389 137481546 -80555612 + L1ME4a LINE L1 5956 6121 0 574 236 27 51 chr3 137482702 137482883 -80554275 + L1MC/D LINE L1 5462 5641 -2167 454 348 35 20 chr3 137483322 137483523 -80553635 - MIR3 SINE MIR -4 204 1 337 179 8 154 chr3 137483641 137483764 -80553394 + L2 LINE L2 3209 3313 0 966 191 19 0 chr3 137483868 137484025 -80553133 - AluJo SINE Alu -63 249 90 446 252 117 0 chr3 137484102 137484205 -80552953 + L2 LINE L2 3192 3306 -7 199 0 65 0 chr3 137484240 137484271 -80552887 + (TC)n Simple_repeat Simple_repeat 1 33 0 2377 79 0 0 chr3 137484434 137484724 -80552434 - AluSg1 SINE Alu -19 290 1 336 250 138 66 chr3 137485056 137485208 -80551950 - L2 LINE L2 0 3313 3151 369 286 119 94 chr3 137486149 137486576 -80550582 - L2 LINE L2 0 3272 2835 351 278 128 21 chr3 137486590 137486824 -80550334 - MLT1J LTR MaLR -1 510 252 465 284 83 61 chr3 137486920 137487149 -80550009 - MLT1J LTR MaLR -270 241 8 325 239 106 6 chr3 137487542 137487676 -80549482 + MIR SINE MIR 63 205 -36 2030 97 4 4 chr3 137487697 137487964 -80549194 + AluY SINE Alu 36 302 -9 822 256 107 61 chr3 137488110 137488134 -80549024 + L1MC4 LINE L1 7355 7376 -666 2398 105 0 0 chr3 137488134 137488438 -80548720 - AluSx SINE Alu -8 304 1 822 256 107 61 chr3 137488438 137488890 -80548268 + L1MC4 LINE L1 7376 7853 -189 26 0 0 0 chr3 137489033 137489059 -80548099 + AT_rich Low_complexity Low_complexity 1 26 0 617 323 91 21 chr3 137489569 137490052 -80547106 - MER113 DNA MER1_type? -4 517 1 248 267 11 67 chr3 137490368 137490458 -80546700 + MIR3 SINE MIR 112 196 -12 422 269 37 22 chr3 137491351 137491485 -80545673 + MIR SINE MIR 51 186 -76 254 100 60 60 chr3 137491584 137491634 -80545524 + MIR SINE MIR 40 89 -173 479 318 104 9 chr3 137492025 137492245 -80544913 + L2 LINE L2 3026 3266 -6 818 174 0 6 chr3 137492275 137492453 -80544705 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 585 229 0 0 chr3 137492467 137492624 -80544534 + (TGGA)n Simple_repeat Simple_repeat 1 157 0 1233 64 0 0 chr3 137492626 137492767 -80544391 + AluSq/x SINE Alu 1 141 -172 2236 233 46 1 chr3 137492767 137493436 -80543722 - L1M4 LINE L1 -2385 3761 3063 2583 72 3 0 chr3 137493632 137493939 -80543219 - AluY SINE Alu -1 310 3 817 321 62 27 chr3 137494123 137494572 -80542586 - MLT1K LTR MaLR -122 466 2 402 288 117 65 chr3 137494874 137495225 -80541933 - MLT1L LTR MaLR -108 507 139 1822 189 0 0 chr3 137495225 137495532 -80541626 + AluJo SINE Alu 1 307 -5 1062 216 0 0 chr3 137496008 137496202 -80540956 + MLT1B LTR MaLR 192 385 -5 261 290 32 97 chr3 137497100 137497224 -80539934 - L2 LINE L2 -2 3270 3155 798 229 59 102 chr3 137497476 137497848 -80539310 + MLT1H LTR MaLR 123 478 -71 325 349 40 0 chr3 137498637 137498789 -80538369 - MIR SINE MIR -85 177 20 271 286 14 0 chr3 137499520 137499590 -80537568 + MIR SINE MIR 82 152 -56 440 198 0 9 chr3 137499847 137499953 -80537205 + CT-rich Low_complexity Low_complexity 2 106 0 452 277 131 0 chr3 137501546 137501683 -80535475 + MER91A DNA MER1_type 42 196 0 2178 104 0 7 chr3 137503848 137504145 -80533013 - AluSx SINE Alu -17 295 1 646 231 15 0 chr3 137504259 137504389 -80532769 - FLAM_A SINE Alu -1 132 1 21 36 0 0 chr3 137504614 137504642 -80532516 + GC_rich Low_complexity Low_complexity 1 28 0 212 213 16 0 chr3 137504880 137504941 -80532217 + (TG)n Simple_repeat Simple_repeat 1 62 0 225 253 84 24 chr3 137506821 137506904 -80530254 + MIR SINE MIR 175 262 0 200 275 0 100 chr3 137507544 137507577 -80529581 - MIR SINE MIR -74 188 153 2306 101 0 3 chr3 137507577 137507874 -80529284 - AluSc SINE Alu -13 296 1 200 275 0 100 chr3 137507874 137507920 -80529238 - MIR SINE MIR -109 153 117 2081 126 10 0 chr3 137508210 137508503 -80528655 - AluSx SINE Alu -12 300 5 208 364 51 8 chr3 137508532 137508650 -80528508 + L3b LINE CR1 1298 1420 -163 197 244 179 24 chr3 137509818 137509941 -80527217 + MIR SINE MIR 2 143 -119 626 257 11 55 chr3 137510029 137510212 -80526946 - MIR SINE MIR -60 202 28 251 53 0 26 chr3 137510526 137510564 -80526594 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 1782 145 46 30 chr3 137510567 137510870 -80526288 - AluJb SINE Alu -4 308 1 180 0 0 0 chr3 137511408 137511428 -80525730 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 916 243 18 23 chr3 137511836 137512054 -80525104 + MIR SINE MIR 11 227 -35 247 344 0 47 chr3 137512081 137512209 -80524949 - MIR SINE MIR -15 247 126 226 318 62 39 chr3 137513242 137513371 -80523787 - MIR SINE MIR -52 210 79 418 232 18 45 chr3 137513501 137513613 -80523545 - MIR SINE MIR -63 199 91 198 327 68 49 chr3 137514385 137514547 -80522611 + L2 LINE L2 3057 3221 -51 266 288 15 0 chr3 137515371 137515437 -80521721 - L2 LINE L2 -539 2775 2709 819 146 133 19 chr3 137515937 137516095 -80521063 + MER5B DNA MER1_type 3 178 0 1583 132 174 4 chr3 137517124 137517389 -80519769 - AluJb SINE Alu -2 310 1 213 279 221 8 chr3 137517389 137517511 -80519647 + MIR SINE MIR 96 243 -19 226 330 102 20 chr3 137517743 137517940 -80519218 - MIR SINE MIR -33 229 17 2201 124 0 3 chr3 137518050 137518357 -80518801 - AluSx SINE Alu -6 306 1 420 246 17 11 chr3 137519015 137519190 -80517968 + (CATA)n Simple_repeat Simple_repeat 1 176 0 2382 102 0 9 chr3 137520897 137521212 -80515946 - AluSx SINE Alu 0 312 1 1685 192 16 26 chr3 137521241 137521554 -80515604 + AluJo SINE Alu 1 310 -2 325 269 134 8 chr3 137522395 137522514 -80514644 - MIR SINE MIR -12 250 117 434 322 102 35 chr3 137522591 137522964 -80514194 - MLT1J LTR MaLR -111 400 3 652 158 40 62 chr3 137523849 137524026 -80513132 - MER5B DNA MER1_type -3 175 3 263 330 11 0 chr3 137525343 137525437 -80511721 + MIR SINE MIR 106 200 -62 438 181 112 0 chr3 137525437 137525553 -80511605 - MER5A DNA MER1_type -4 185 57 234 0 0 0 chr3 137525564 137525590 -80511568 + (CTG)n Simple_repeat Simple_repeat 1 26 0 227 299 46 11 chr3 137525801 137525888 -80511270 - L2 LINE L2 -1 3312 3223 239 278 164 38 chr3 137526063 137526326 -80510832 - L2 LINE L2 -360 2954 2659 749 290 37 5 chr3 137526819 137527036 -80510122 - MIR SINE MIR -11 251 28 1980 157 14 11 chr3 137527247 137527611 -80509547 - MLT1A1 LTR MaLR 0 365 1 421 252 59 0 chr3 137527865 137527984 -80509174 + MIR SINE MIR 63 188 -74 323 345 110 14 chr3 137528011 137528220 -80508938 + MIR SINE MIR 12 240 -22 1946 148 3 26 chr3 137528644 137528949 -80508209 + AluJb SINE Alu 1 298 -14 193 167 0 0 chr3 137529486 137529522 -80507636 + MIR SINE MIR 77 112 -150 1344 158 14 10 chr3 137529987 137530196 -80506962 + AluJo SINE Alu 10 219 -93 388 170 80 36 chr3 137530515 137530627 -80506531 - L2 LINE L2 -5 3308 3192 244 300 12 0 chr3 137530738 137530818 -80506340 + MIR SINE MIR 106 186 -76 2360 112 3 0 chr3 137530926 137531231 -80505927 - AluSx SINE Alu -6 306 1 374 234 297 0 chr3 137531326 137531357 -80505801 + MER5A DNA MER1_type 2 23 -166 180 77 0 0 chr3 137531357 137531383 -80505775 + (CAG)n Simple_repeat Simple_repeat 1 26 0 374 234 297 0 chr3 137531383 137531496 -80505662 + MER5A DNA MER1_type 23 189 0 308 304 38 0 chr3 137531852 137531931 -80505227 + MIR SINE MIR 2 83 -179 1226 244 42 3 chr3 137531938 137532298 -80504860 - L1M4 LINE L1 -2440 3706 3333 447 293 43 6 chr3 137532298 137532462 -80504696 + MIR SINE MIR 93 262 0 300 283 151 0 chr3 137532718 137532824 -80504334 - L2 LINE L2 0 3272 3151 369 314 8 8 chr3 137532930 137533054 -80504104 + MIR SINE MIR 31 154 -108 254 96 0 58 chr3 137533102 137533154 -80504004 + (ATGGTG)n Simple_repeat Simple_repeat 1 49 0 183 42 0 0 chr3 137533209 137533233 -80503925 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1956 145 0 7 chr3 137533236 137533518 -80503640 - AluSx SINE Alu -32 280 1 206 274 186 9 chr3 137533959 137534072 -80503086 - L2 LINE L2 -8 3264 3132 370 205 141 90 chr3 137534211 137534367 -80502791 + MIR SINE MIR 84 247 -15 645 258 53 34 chr3 137535285 137535494 -80501664 + MIR SINE MIR 46 258 -4 187 322 74 25 chr3 137537415 137537536 -80499622 + MIR SINE MIR 124 250 -12 192 245 0 0 chr3 137538632 137538685 -80498473 + MIR SINE MIR 108 160 -102 234 319 142 14 chr3 137539364 137539505 -80497653 - MIR SINE MIR -43 219 61 271 177 41 0 chr3 137540006 137540080 -80497078 + MIR SINE MIR 60 138 -70 198 289 0 0 chr3 137540838 137540890 -80496268 - MIR SINE MIR -7 255 204 2402 96 6 13 chr3 137541080 137541394 -80495764 + AluSx SINE Alu 1 312 0 744 269 174 21 chr3 137541853 137542273 -80494885 - L2 LINE L2 0 3313 2830 213 178 0 0 chr3 137542815 137542860 -80494298 + (TG)n Simple_repeat Simple_repeat 2 46 0 498 212 137 94 chr3 137542977 137543383 -80493775 - MLT1H LTR MaLR -13 536 39 326 278 43 9 chr3 137543521 137543636 -80493522 - MLT1J LTR MaLR -3 508 390 1253 184 119 1 chr3 137543636 137544079 -80493079 - MER74A LTR ERVL 0 558 2 615 308 91 44 chr3 137544087 137544451 -80492707 - MLT1J LTR MaLR -128 383 3 317 245 25 69 chr3 137544451 137544610 -80492548 - MER113 DNA MER1_type? -320 201 50 190 337 22 22 chr3 137545719 137545808 -80491350 + MIR SINE MIR 108 196 -66 199 306 102 0 chr3 137546600 137546698 -80490460 - MIR SINE MIR -108 154 47 309 333 69 6 chr3 137547699 137547858 -80489300 + L1MC4a LINE L1 5723 5891 -1917 2296 95 3 7 chr3 137547898 137548194 -80488964 + AluSq SINE Alu 1 295 -18 1497 221 102 34 chr3 137548588 137549096 -80488062 - MLT1H LTR MaLR -3 546 4 318 295 147 0 chr3 137549518 137549647 -80487511 - L1ME4a LINE L1 -1 6120 5973 490 268 187 0 chr3 137550126 137550481 -80486677 + L2 LINE L2 2643 3052 -261 257 325 32 8 chr3 137551298 137551421 -80485737 - L2 LINE L2 -221 3051 2926 1561 159 159 9 chr3 137551497 137551836 -80485322 - MLT1B LTR MaLR 0 390 1 397 63 13 76 chr3 137551850 137551929 -80485229 + (TC)n Simple_repeat Simple_repeat 1 74 0 296 280 90 10 chr3 137552770 137552870 -80484288 - L2 LINE L2 -21 3251 3144 212 191 32 32 chr3 137553205 137553268 -80483890 + (CAGAGA)n Simple_repeat Simple_repeat 2 64 0 2102 159 44 7 chr3 137554607 137555015 -80482143 - L1PB4 LINE L1 -2 6154 5732 404 279 76 41 chr3 137555050 137555296 -80481862 - MIR SINE MIR -7 255 1 243 0 0 0 chr3 137556702 137556729 -80480429 + (T)n Simple_repeat Simple_repeat 1 27 0 2093 103 4 0 chr3 137557187 137557459 -80479699 + AluSx SINE Alu 1 273 -39 2278 115 0 0 chr3 137557688 137557992 -80479166 - AluSx SINE Alu -8 304 1 588 318 107 6 chr3 137558082 137558448 -80478710 + L1ME LINE L1 5478 5877 -289 884 237 51 15 chr3 137559866 137560140 -80477018 + L1MB3 LINE L1 5898 6181 -2 345 262 12 0 chr3 137560141 137560225 -80476933 + Charlie8 DNA MER1_type 96 180 -2237 570 320 52 4 chr3 137560902 137561133 -80476025 - MIR SINE MIR -4 258 17 466 275 79 28 chr3 137561295 137561473 -80475685 + MER3 DNA MER1_type 1 187 -22 2159 120 3 13 chr3 137561975 137562276 -80474882 - AluJb SINE Alu -14 298 1 1958 119 53 0 chr3 137562372 137562657 -80474501 + AluSq SINE Alu 9 308 -5 22 56 0 0 chr3 137563347 137563383 -80473775 + AT_rich Low_complexity Low_complexity 1 36 0 3557 159 22 17 chr3 137563510 137564231 -80472927 + L1MB2 LINE L1 5447 6171 0 712 259 133 11 chr3 137564406 137564676 -80472482 + L1MC4 LINE L1 6765 7067 -975 1887 258 95 61 chr3 137564708 137565669 -80471489 + HAL1 LINE L1 21 1013 -1494 247 274 0 41 chr3 137566144 137566217 -80470941 - Charlie8 DNA MER1_type 0 2417 2348 2200 132 0 3 chr3 137566483 137566786 -80470372 + AluSx SINE Alu 1 302 -10 390 185 0 0 chr3 137567628 137567709 -80469449 + CT-rich Low_complexity Low_complexity 2 82 0 916 294 109 49 chr3 137569012 137569963 -80467195 + HAL1 LINE L1 920 1927 -580 324 348 81 38 chr3 137570153 137570363 -80466795 + HAL1 LINE L1 825 1043 -1464 188 391 135 0 chr3 137570363 137570555 -80466603 + L3 LINE CR1 1355 1572 -5 229 347 91 17 chr3 137570557 137570733 -80466425 - L2 LINE L2 -616 2698 2510 1734 177 17 7 chr3 137571167 137571461 -80465697 - AluJo SINE Alu -15 297 1 2466 82 0 0 chr3 137571462 137571755 -80465403 - AluSg SINE Alu -13 297 5 1000 120 0 33 chr3 137571756 137571906 -80465252 - AluJo SINE Alu -167 145 1 212 280 43 32 chr3 137571906 137571999 -80465159 + MIR3 SINE MIR 115 208 0 245 348 45 0 chr3 137572071 137572160 -80464998 + L2 LINE L2 3148 3240 -32 205 286 92 34 chr3 137572240 137572446 -80464712 + L2 LINE L2 2063 2280 -1034 518 279 101 6 chr3 137572566 137572745 -80464413 + MIR SINE MIR 59 254 -8 250 108 0 0 chr3 137572766 137572803 -80464355 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1190 131 0 0 chr3 137572803 137572963 -80464195 - AluSg/x SINE Alu -1 317 122 1904 104 4 8 chr3 137572965 137573216 -80463942 + AluSq SINE Alu 1 250 -63 561 258 82 12 chr3 137573415 137573671 -80463487 + AluJo SINE Alu 33 306 -6 2200 127 3 0 chr3 137573679 137573979 -80463179 + AluSx SINE Alu 3 303 -9 341 252 48 20 chr3 137574085 137574155 -80463003 + L1ME4a LINE L1 5967 6034 -87 2268 113 0 0 chr3 137574155 137574471 -80462687 - AluSq SINE Alu 0 313 1 341 252 48 20 chr3 137574471 137574547 -80462611 + L1ME4a LINE L1 6034 6117 -4 336 309 148 38 chr3 137574932 137575168 -80461990 + MIR SINE MIR 1 262 0 216 372 23 16 chr3 137575925 137576054 -80461104 - L2 LINE L2 -6 3307 3178 2313 112 0 0 chr3 137576152 137576457 -80460701 - AluSx SINE Alu -7 305 1 364 373 0 0 chr3 137576717 137576843 -80460315 + MIR3 SINE MIR 73 198 -10 195 308 46 0 chr3 137576991 137577056 -80460102 + L3 LINE CR1 924 991 -586 194 247 55 104 chr3 137577284 137577466 -80459692 + MIR SINE MIR 89 261 -1 * 240 283 83 69 chr3 137577461 137577606 -80459552 + L3 LINE CR1 1167 1313 -264 2071 129 7 7 chr3 137577766 137578069 -80459089 + AluSx SINE Alu 1 303 -9 1527 221 113 20 chr3 137578712 137579119 -80458039 + MLT1H LTR MaLR 59 503 -46 757 231 59 0 chr3 137579121 137579290 -80457868 - MER5A DNA MER1_type -5 184 6 311 154 0 0 chr3 137579300 137579352 -80457806 + MLT1H LTR MaLR 498 549 0 219 69 0 0 chr3 137579416 137579445 -80457713 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 273 368 49 0 chr3 137579445 137579603 -80457555 - L2 LINE L2 -5 3308 3143 264 122 49 12 chr3 137580060 137580118 -80457040 - MER5A DNA MER1_type -125 64 4 2276 112 6 10 chr3 137580136 137580450 -80456708 - AluSq SINE Alu 0 313 1 2314 87 3 0 chr3 137580453 137580741 -80456417 - AluSq SINE Alu -18 295 7 277 328 84 46 chr3 137580790 137581279 -80455879 + L2 LINE L2 2770 3270 -2 376 220 143 0 chr3 137581286 137581377 -80455781 - MIR3 SINE MIR -49 159 56 270 0 0 0 chr3 137581388 137581418 -80455740 + (CA)n Simple_repeat Simple_repeat 1 30 0 328 244 144 11 chr3 137581425 137581515 -80455643 - MIR3 SINE MIR -51 157 56 267 270 0 80 chr3 137582051 137582151 -80455007 - L2 LINE L2 -25 3288 3197 201 154 0 0 chr3 137585244 137585283 -80451875 + (CA)n Simple_repeat Simple_repeat 1 39 0 30 59 0 0 chr3 137585456 137585507 -80451651 + GC_rich Low_complexity Low_complexity 1 51 0 23 68 0 0 chr3 137585547 137585591 -80451567 + GC_rich Low_complexity Low_complexity 1 44 0 206 301 21 14 chr3 137585609 137585752 -80451406 + (CGG)n Simple_repeat Simple_repeat 1 144 0 37 23 0 0 chr3 137585791 137585835 -80451323 + GC_rich Low_complexity Low_complexity 1 44 0 251 258 63 69 chr3 137586114 137586273 -80450885 + MIR3 SINE MIR 6 163 -45 180 337 54 106 chr3 137586330 137586680 -80450478 - L2 LINE L2 -50 3222 2891 183 42 0 0 chr3 137587125 137587149 -80450009 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 379 296 109 48 chr3 137587179 137587656 -80449502 + L1M4 LINE L1 3964 4469 -1677 576 192 0 54 chr3 137587657 137587787 -80449371 + FLAM_A SINE Alu 1 123 -10 1919 184 0 0 chr3 137587793 137588092 -80449066 + AluJo SINE Alu 1 299 -13 4004 143 76 33 chr3 137588100 137588319 -80448839 + L1MB8 LINE L1 5199 5407 -771 2109 142 0 0 chr3 137588319 137588614 -80448544 + AluSx SINE Alu 1 295 -17 4004 143 76 33 chr3 137588614 137589273 -80447885 + L1MB8 LINE L1 5407 6124 -54 1262 129 0 0 chr3 137589289 137589459 -80447699 - AluSg/x SINE Alu -21 291 122 1608 173 49 7 chr3 137589526 137589810 -80447348 - AluJo SINE Alu -6 306 11 192 179 0 0 chr3 137589832 137589871 -80447287 + (CA)n Simple_repeat Simple_repeat 2 40 0 239 333 51 43 chr3 137589990 137590224 -80446934 + L2 LINE L2 1682 1917 -1397 317 212 98 61 chr3 137590247 137590267 -80446891 + MER104 DNA Tc2 44 62 -1836 2106 82 0 78 chr3 137590267 137590597 -80446561 + AluSx SINE Alu 1 306 0 317 212 98 61 chr3 137590597 137590707 -80446451 + MER104 DNA Tc2 62 180 0 474 298 252 17 chr3 137590722 137590891 -80446267 + L2 LINE L2 1942 2070 -1244 2383 94 0 7 chr3 137590891 137591189 -80445969 - AluSg SINE Alu -14 296 1 474 298 252 17 chr3 137591189 137591559 -80445599 + L2 LINE L2 2070 2608 -706 1598 146 88 15 chr3 137591772 137592046 -80445112 + AluJb SINE Alu 1 294 -18 282 337 140 11 chr3 137593372 137593550 -80443608 + MIR SINE MIR 50 250 -12 1875 157 10 14 chr3 137594897 137595190 -80441968 - AluJo SINE Alu -20 292 1 2176 88 63 0 chr3 137595190 137595473 -80441685 - AluSg SINE Alu -7 303 2 260 314 155 17 chr3 137595962 137596473 -80440685 - L2 LINE L2 -3 3310 2699 180 280 60 0 chr3 137599363 137599413 -80437745 + MIR SINE MIR 117 169 -93 851 217 70 89 chr3 137599894 137600253 -80436905 + L1MC5 LINE L1 6704 7055 -906 * 1255 256 63 33 chr3 137600225 137600775 -80436383 + L1MC5 LINE L1 7296 7867 -94 1728 189 64 11 chr3 137600775 137601151 -80436007 + MSTD LTR MaLR 1 396 0 1255 256 63 33 chr3 137601151 137601198 -80435960 + L1MC5 LINE L1 7867 7911 -50 455 282 233 5 chr3 137601289 137601491 -80435667 + MIR SINE MIR 4 251 -11 811 256 201 20 chr3 137601529 137601923 -80435235 + LTR40c LTR ERVL 1 465 0 339 242 268 13 chr3 137601932 137602085 -80435073 - MIR SINE MIR -51 211 20 342 321 208 0 chr3 137602405 137602564 -80434594 - MIR SINE MIR -48 214 23 463 320 84 0 chr3 137602667 137602870 -80434288 - Charlie8 DNA MER1_type -2128 289 70 2923 6 0 3 chr3 137602890 137603202 -80433956 + AluYa5 SINE Alu 1 311 0 295 239 128 43 chr3 137603850 137603967 -80433191 + L2 LINE L2 3145 3271 -1 208 268 206 0 chr3 137604506 137604603 -80432555 - L2 LINE L2 0 3272 3156 2443 92 10 0 chr3 137604743 137605048 -80432110 + AluSx SINE Alu 1 308 -4 708 144 23 30 chr3 137605282 137605414 -80431744 + FLAM_C SINE Alu 3 133 0 363 222 167 0 chr3 137606759 137606867 -80430291 + MIR SINE MIR 22 147 -115 274 316 202 18 chr3 137606995 137607213 -80429945 + MIR SINE MIR 1 258 -4 231 191 59 15 chr3 137607263 137607331 -80429827 - LTR16A1 LTR ERVL -98 359 289 366 244 106 8 chr3 137607777 137607900 -80429258 - Charlie8 DNA MER1_type -2231 186 52 229 286 136 14 chr3 137608886 137609026 -80428132 + MIR SINE MIR 57 213 -49 2374 98 3 0 chr3 137609148 137609453 -80427705 + AluSp SINE Alu 1 306 -7 1757 171 67 3 chr3 137610442 137610799 -80426359 + L1MB3 LINE L1 5762 6141 -42 1805 158 21 0 chr3 137610799 137610928 -80426230 + AluJo SINE Alu 1 126 -196 2402 97 0 10 chr3 137610928 137611238 -80425920 + AluSc SINE Alu 1 307 -2 1805 158 21 0 chr3 137611238 137611424 -80425734 + AluJo SINE Alu 126 322 0 667 108 217 0 chr3 137611427 137611567 -80425591 + AluSq SINE Alu 137 302 0 259 63 0 159 chr3 137611567 137611590 -80425568 + L1MB2 LINE L1 6118 6143 -28 2232 91 42 0 chr3 137611590 137611877 -80425281 + AluSc SINE Alu 1 299 -10 259 63 0 159 chr3 137611877 137611916 -80425242 + L1MB2 LINE L1 6143 6170 -1 2690 208 100 23 chr3 137612703 137613222 -80423936 + L1MB7 LINE L1 5112 5590 -594 2035 114 4 21 chr3 137613222 137613503 -80423655 + AluSx SINE Alu 1 276 -36 228 35 0 0 chr3 137613505 137613534 -80423624 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2690 208 100 23 chr3 137613534 137614004 -80423154 + L1MB7 LINE L1 5590 6179 -5 2199 118 0 3 chr3 137614586 137614882 -80422276 - AluSq SINE Alu -10 303 9 185 274 39 0 chr3 137614907 137614958 -80422200 + L2 LINE L2 3214 3266 -6 285 225 14 0 chr3 137615680 137615751 -80421407 + L2 LINE L2 2898 2969 -303 2508 68 0 0 chr3 137616782 137617075 -80420083 + AluSg SINE Alu 1 293 -17 210 305 62 31 chr3 137617193 137617321 -80419837 - L2 LINE L2 -231 3041 2910 390 256 128 119 chr3 137617429 137617760 -80419398 - L2 LINE L2 -527 2787 2460 2043 110 24 7 chr3 137617760 137618050 -80419108 - AluSx SINE Alu -16 296 2 390 256 128 119 chr3 137618050 137618390 -80418768 - L2 LINE L2 -854 2460 2110 584 245 129 15 chr3 137618621 137618712 -80418446 - L1M4 LINE L1 -1346 4800 4721 1798 150 4 4 chr3 137618712 137618972 -80418186 + AluSx SINE Alu 37 296 -16 584 245 129 15 chr3 137618972 137619164 -80417994 - L1M4 LINE L1 -1425 4721 4462 198 388 0 0 chr3 137619556 137619636 -80417522 + L2 LINE L2 2568 2647 -667 599 279 51 9 chr3 137621089 137621304 -80415854 - MIR SINE MIR 0 262 39 358 271 119 61 chr3 137621641 137621951 -80415207 + MLT1H1 LTR MaLR 206 533 -22 1266 162 33 0 chr3 137622326 137622536 -80414622 + AluJo SINE Alu 87 303 -9 2297 113 0 0 chr3 137622608 137622899 -80414259 - AluSx SINE Alu -21 291 1 462 207 0 45 chr3 137623124 137623235 -80413923 - L2 LINE L2 0 3313 3208 365 287 152 6 chr3 137623758 137623922 -80413236 - MIR SINE MIR 0 262 75 2138 108 0 10 chr3 137624099 137624396 -80412762 + AluSx SINE Alu 1 294 -18 199 319 104 22 chr3 137625083 137625265 -80411893 + L3b LINE CR1 1187 1383 -200 595 253 194 25 chr3 137625549 137625909 -80411249 - L1ME3A LINE L1 -223 5947 5527 214 256 100 0 chr3 137627403 137627493 -80409665 + L2 LINE L2 2698 2796 -518 3997 94 2 0 chr3 137627584 137628137 -80409021 - MER41A LTR ERV1 0 554 1 328 295 130 25 chr3 137628661 137628861 -80408297 + MIR SINE MIR 29 249 -13 1260 261 35 8 chr3 137629186 137629561 -80407597 - MER74B LTR ERVL 0 622 238 444 155 12 12 chr3 137629584 137629668 -80407490 - MER74A LTR ERVL -474 84 1 315 0 0 0 chr3 137629720 137629755 -80407403 + (TAA)n Simple_repeat Simple_repeat 2 36 0 739 164 16 0 chr3 137629772 137629894 -80407264 + FLAM_A SINE Alu 1 124 -9 185 256 24 61 chr3 137630068 137630150 -80407008 - L2 LINE L2 -4 3268 3190 195 318 76 45 chr3 137630940 137631072 -80406086 - L2 LINE L2 -784 2530 2395 485 168 17 17 chr3 137631496 137631615 -80405543 + L1MB5 LINE L1 6056 6174 0 601 176 78 7 chr3 137631665 137631818 -80405340 + L1MB3 LINE L1 6019 6182 -1 1433 256 97 132 chr3 137632024 137633359 -80403799 + L1MC4a LINE L1 5263 6531 -1277 2147 133 23 0 chr3 137633359 137633659 -80403499 - AluJb SINE Alu -5 307 1 1433 256 97 132 chr3 137633659 137633964 -80403194 + L1MC4a LINE L1 6531 6845 -963 370 274 65 23 chr3 137634044 137634255 -80402903 + L1MC5 LINE L1 7512 7850 -192 306 237 30 76 chr3 137634294 137634359 -80402799 - L1MC4 LINE L1 0 8042 7984 2240 89 36 7 chr3 137634359 137634661 -80402497 + AluY SINE Alu 1 311 0 306 237 30 76 chr3 137634661 137634726 -80402432 - L1MC4 LINE L1 -58 7984 7918 411 137 25 0 chr3 137634728 137634851 -80402307 + CT-rich Low_complexity Low_complexity 1 126 0 1243 194 65 54 chr3 137634851 137635300 -80401858 - AluJo SINE Alu 0 452 1 268 339 8 0 chr3 137635488 137635606 -80401552 + L1MC4a LINE L1 5846 5964 -1844 2695 180 48 31 chr3 137636456 137636903 -80400255 + L1MB3 LINE L1 5589 6050 -133 2123 144 37 3 chr3 137636903 137637279 -80399879 - MLT1B LTR MaLR -1 389 1 2695 180 48 31 chr3 137637279 137637413 -80399745 + L1MB3 LINE L1 6050 6180 -3 539 231 38 25 chr3 137638270 137638430 -80398728 + MIR SINE MIR 58 219 -43 226 308 13 0 chr3 137639311 137639389 -80397769 + Charlie8 DNA MER1_type 1350 1428 -989 225 0 0 0 chr3 137639554 137639579 -80397579 + (A)n Simple_repeat Simple_repeat 1 25 0 545 267 19 12 chr3 137639958 137640119 -80397039 + MIR SINE MIR 58 219 -43 258 282 13 0 chr3 137641000 137641078 -80396080 + Charlie8 DNA MER1_type 1350 1428 -989 207 0 0 0 chr3 137641242 137641265 -80395893 + (A)n Simple_repeat Simple_repeat 1 23 0 217 325 131 7 chr3 137643234 137643423 -80393735 - MIR SINE MIR -34 228 20 236 303 56 0 chr3 137645266 137645355 -80391803 - MIR SINE MIR -52 210 117 266 279 38 13 chr3 137646433 137646512 -80390646 - MIR SINE MIR -70 192 112 332 250 31 10 chr3 137647549 137647645 -80389513 + MER5B DNA MER1_type 14 111 -67 293 245 71 10 chr3 137649447 137649545 -80387613 + MER5B DNA MER1_type 8 111 -67 183 100 0 0 chr3 137650568 137650598 -80386560 + (CAGAGA)n Simple_repeat Simple_repeat 2 31 0 195 290 81 0 chr3 137650679 137650741 -80386417 + MIR SINE MIR 117 183 -79 2473 65 14 0 chr3 137650751 137651044 -80386114 + AluSg SINE Alu 1 297 -13 205 263 100 0 chr3 137651495 137651575 -80385583 - MIR SINE MIR -72 136 49 1033 239 158 26 chr3 137652436 137652854 -80384304 - MLT1K LTR MaLR 0 588 42 242 328 84 8 chr3 137652859 137652978 -80384180 - MIR SINE MIR -63 145 18 620 251 96 0 chr3 137653667 137653834 -80383324 - MIR SINE MIR -59 203 21 300 263 53 38 chr3 137655089 137655222 -80381936 - MIR SINE MIR -81 181 47 1874 172 21 67 chr3 137656591 137656968 -80380190 - L1M3 LINE L1 -451 5732 5376 2409 98 3 0 chr3 137656968 137657274 -80379884 - AluSp SINE Alu 0 313 7 1874 172 21 67 chr3 137657274 137657332 -80379826 - L1M3 LINE L1 -807 5376 5317 1926 82 0 18 chr3 137657372 137657651 -80379507 - L1PA10 LINE L1 0 6168 5895 4141 99 32 24 chr3 137657752 137658957 -80378201 - L1PA10 LINE L1 -240 5891 4682 967 195 8 62 chr3 137658952 137659258 -80377900 - L1M3 LINE L1 -815 5331 5062 * 293 248 6 102 chr3 137659261 137659418 -80377740 - L1MC4 LINE L1 -137 7905 7764 2478 71 0 3 chr3 137659886 137660182 -80376976 + AluSx SINE Alu 5 299 -13 207 191 0 0 chr3 137661600 137661642 -80375516 + (TTG)n Simple_repeat Simple_repeat 1 42 0 2216 136 0 0 chr3 137661644 137661954 -80375204 - AluJb SINE Alu 0 312 3 238 240 132 41 chr3 137662266 137662387 -80374771 - L2 LINE L2 0 3313 3182 857 248 31 19 chr3 137663219 137663477 -80373681 + MIR SINE MIR 2 262 0 189 200 0 0 chr3 137663772 137663812 -80373346 - MIR SINE MIR -74 134 95 1593 215 20 3 chr3 137664059 137664413 -80372745 - L1MD1 LINE L1 -1 6241 5882 694 239 83 7 chr3 137665198 137665383 -80371775 - MLT1J LTR MaLR -239 199 12 478 259 62 25 chr3 137665383 137665545 -80371613 + MIR SINE MIR 95 262 0 2385 105 0 0 chr3 137666175 137666480 -80370678 + AluSx SINE Alu 1 305 -7 2201 102 0 58 chr3 137667106 137667431 -80369727 - AluSx SINE Alu -6 306 1 397 287 0 0 chr3 137668438 137668525 -80368633 - L1MC4 LINE L1 -1342 6700 6614 374 322 0 0 chr3 137668453 137668543 -80368615 + L1MC4 LINE L1 6614 6703 -1339 * 353 203 14 14 chr3 137668496 137668556 -80368602 - L1MCa LINE L1 -4362 2064 2002 * 2291 100 7 0 chr3 137668556 137668857 -80368301 - AluSx SINE Alu -8 304 2 353 203 14 14 chr3 137668857 137668870 -80368288 - L1MCa LINE L1 -4423 2003 1991 282 321 72 65 chr3 137668982 137669244 -80367914 - L2 LINE L2 0 3313 3050 388 277 61 7 chr3 137669410 137669558 -80367600 - L2 LINE L2 -524 2790 2635 679 306 158 9 chr3 137669744 137670312 -80366846 - L2 LINE L2 -975 2339 1687 207 0 0 0 chr3 137670731 137670754 -80366404 + (A)n Simple_repeat Simple_repeat 1 23 0 582 316 149 3 chr3 137674232 137674561 -80362597 + L2 LINE L2 2520 2896 -418 217 318 45 36 chr3 137674596 137674706 -80362452 + L2 LINE L2 3105 3215 -98 243 88 0 0 chr3 137674781 137674815 -80362343 + (TGAG)n Simple_repeat Simple_repeat 2 35 0 609 222 0 0 chr3 137674991 137675167 -80361991 + (TGAG)n Simple_repeat Simple_repeat 1 176 0 434 169 28 34 chr3 137675209 137675387 -80361771 + (TGAA)n Simple_repeat Simple_repeat 3 179 0 568 208 6 11 chr3 137675424 137675602 -80361556 + (TGAA)n Simple_repeat Simple_repeat 4 180 0 208 242 16 16 chr3 137675602 137675664 -80361494 + (TGAG)n Simple_repeat Simple_repeat 3 64 0 466 242 6 6 chr3 137675665 137675843 -80361315 + (TGAA)n Simple_repeat Simple_repeat 2 179 0 752 186 0 16 chr3 137675864 137676047 -80361111 + (TGAA)n Simple_repeat Simple_repeat 1 180 0 501 199 17 11 chr3 137676110 137676286 -80360872 + (TGAA)n Simple_repeat Simple_repeat 3 179 0 341 250 23 6 chr3 137676320 137676492 -80360666 + (TGAA)n Simple_repeat Simple_repeat 1 175 0 260 207 17 0 chr3 137676507 137676565 -80360593 + (TGAG)n Simple_repeat Simple_repeat 2 60 0 618 217 21 16 chr3 137676566 137677010 -80360148 + (TGAA)n Simple_repeat Simple_repeat 1 446 0 203 152 22 0 chr3 137677017 137677063 -80360095 + GA-rich Low_complexity Low_complexity 4 50 0 499 268 25 0 chr3 137677106 137677263 -80359895 + MER45A DNA AcHobo 1 161 -17 194 252 0 117 chr3 137677485 137677588 -80359570 - L2 LINE L2 -21 3251 3161 2071 128 3 0 chr3 137678128 137678418 -80358740 - AluJo SINE Alu -11 301 11 2135 119 3 0 chr3 137679135 137679465 -80357693 + AluSq SINE Alu 1 331 0 410 129 118 0 chr3 137679936 137680021 -80357137 - L1M LINE L1 -948 5411 5317 2078 124 3 7 chr3 137680036 137680334 -80356824 - AluSx SINE Alu -11 301 5 530 158 0 0 chr3 137680356 137680451 -80356707 - AluJ/FRAM SINE Alu -1 311 217 3177 223 39 40 chr3 137680451 137681102 -80356056 - L1M4 LINE L1 -817 5329 4678 713 215 0 15 chr3 137681102 137681237 -80355921 - FLAM_C SINE Alu 0 133 1 3177 223 39 40 chr3 137681237 137681645 -80355513 - L1M4 LINE L1 -1468 4678 4271 823 156 71 5 chr3 137681765 137681977 -80355181 - L1MDa LINE L1 -3890 2650 2425 183 42 0 0 chr3 137681990 137682014 -80355144 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 2259 72 7 7 chr3 137682014 137682295 -80354863 - AluSg SINE Alu -26 284 1 208 242 97 16 chr3 137682305 137682367 -80354791 - MIR SINE MIR -79 183 117 183 100 0 0 chr3 137682448 137682478 -80354680 + (TCTCTG)n Simple_repeat Simple_repeat 2 31 0 319 245 71 10 chr3 137683500 137683598 -80353560 - MER5B DNA MER1_type -67 111 8 1296 151 36 4 chr3 137684978 137685229 -80351929 - MER33 DNA MER1_type -63 261 3 1987 157 0 3 chr3 137685293 137685593 -80351565 + AluSg SINE Alu 1 299 -11 240 111 0 0 chr3 137685593 137685629 -80351529 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 2170 102 14 0 chr3 137685640 137685935 -80351223 - AluSp SINE Alu -14 299 1 363 295 130 25 chr3 137687089 137687289 -80349869 + MIR SINE MIR 29 249 -13 391 322 30 27 chr3 137687619 137687999 -80349159 - MER74A LTR ERVL -3 619 182 184 214 0 54 chr3 137689041 137689097 -80348061 - L3b LINE CR1 -4 1579 1527 12688 205 9 5 chr3 137739551 137741588 -80295570 + HERVI LTR ERV1 1758 3805 -3980 2724 36 0 0 chr3 137741588 137741891 -80295267 - AluY SINE Alu -8 303 1 12688 205 9 5 chr3 137741891 137742155 -80295003 + HERVI LTR ERV1 3805 4067 -3718 349 67 0 0 chr3 137742155 137742200 -80294958 + LTR10A LTR ERV1 565 609 0 495 322 66 44 chr3 137742527 137743076 -80294082 + L1MC/D LINE L1 4488 5048 -1098 1832 132 194 31 chr3 137743101 137743488 -80293670 - MSTB2 LTR MaLR -7 450 1 376 220 82 64 chr3 137743556 137743828 -80293330 + L1MC/D LINE L1 5180 5460 -747 1828 137 10 34 chr3 137743850 137744143 -80293015 + AluJb SINE Alu 1 286 -26 22 35 0 0 chr3 137744143 137744172 -80292986 + AT_rich Low_complexity Low_complexity 1 29 0 2395 100 0 0 chr3 137744617 137744918 -80292240 - AluSx SINE Alu -11 301 1 263 119 71 0 chr3 137744984 137745026 -80292132 + L1ME4a LINE L1 5977 6021 -100 273 200 15 0 chr3 137745221 137745286 -80291872 + L2 LINE L2 2273 2338 -976 773 238 126 5 chr3 137745453 137745676 -80291482 - MLT1J LTR MaLR -261 250 1 317 188 62 0 chr3 137745777 137745857 -80291301 + HAL1b LINE L1 1260 1344 -4 882 259 102 42 chr3 137745922 137746332 -80290826 - LTR16A LTR ERVL 0 450 16 389 308 39 50 chr3 137746454 137746636 -80290522 - MIR SINE MIR -71 191 12 1366 205 39 143 chr3 137746870 137747261 -80289897 + L1MC4 LINE L1 7466 7896 -146 1848 146 7 4 chr3 137747261 137747542 -80289616 - AluJo SINE Alu -30 282 1 1366 205 39 143 chr3 137747542 137747772 -80289386 + L1MC4 LINE L1 7896 8021 -21 2374 94 10 3 chr3 137747772 137748079 -80289079 - AluSp SINE Alu -4 309 1 1366 205 39 143 chr3 137748079 137748099 -80289059 + L1MC4 LINE L1 8021 8041 -1 191 395 0 0 chr3 137748233 137748314 -80288844 + L3 LINE CR1 217 297 -1280 564 182 58 25 chr3 137748486 137748607 -80288551 - FLAM_A SINE Alu -8 125 1 1625 180 187 10 chr3 137748739 137749134 -80288024 - MLT1C LTR MaLR -2 465 1 194 256 0 0 chr3 137749134 137749173 -80287985 + L3 LINE CR1 587 625 -952 733 273 14 19 chr3 137750298 137750507 -80286651 + MLT1J2 LTR MaLR 1 208 -242 227 132 26 0 chr3 137751036 137751074 -80286084 - MLT1J1 LTR MaLR -133 313 275 762 251 75 19 chr3 137751236 137751503 -80285655 + L2 LINE L2 3027 3308 -5 191 252 122 52 chr3 137751495 137751610 -80285548 - MIR3 SINE MIR -76 132 10 * 6733 55 39 1 chr3 137752577 137753924 -80283234 + L1PA7 LINE L1 4790 6149 -5 226 154 0 0 chr3 137753986 137754025 -80283133 + L2 LINE L2 3269 3307 -6 220 189 83 83 chr3 137754377 137754509 -80282649 - L2 LINE L2 -1 3271 3140 607 212 0 33 chr3 137754687 137754838 -80282320 - L2 LINE L2 0 3313 3168 651 244 77 80 chr3 137755036 137755463 -80281695 + MLT1J LTR MaLR 86 511 0 315 0 0 0 chr3 137756525 137756560 -80280598 + (CA)n Simple_repeat Simple_repeat 2 36 0 197 326 47 0 chr3 137756774 137756860 -80280298 + L2 LINE L2 368 457 -2857 626 207 24 59 chr3 137757266 137757435 -80279723 - L2 LINE L2 -1 3312 3150 252 111 0 0 chr3 137758983 137759028 -80278130 + (GA)n Simple_repeat Simple_repeat 2 46 0 1652 154 4 15 chr3 137759535 137759801 -80277357 + AluJo SINE Alu 44 306 -6 1551 168 81 37 chr3 137759926 137760013 -80277145 + L1MB4 LINE L1 5782 5864 -316 2070 117 0 0 chr3 137760013 137760295 -80276863 + AluSx SINE Alu 1 282 -30 1551 168 81 37 chr3 137760295 137760589 -80276569 + L1MB4 LINE L1 5864 6180 0 1503 65 3 224 chr3 137760630 137760982 -80276176 + LTR12 LTR ERV1 1 274 -440 251 275 0 0 chr3 137760986 137761055 -80276103 + LTR30 LTR ERV1 546 614 -108 517 189 76 76 chr3 137761055 137761187 -80275971 + LTR12 LTR ERV1 349 480 -234 1000 186 11 52 chr3 137761195 137761423 -80275735 + MLT1D LTR MaLR 247 449 -56 451 124 56 11 chr3 137761696 137761785 -80275373 + MER53 DNA DNA 97 189 0 285 316 38 30 chr3 137762645 137762778 -80274380 + L2 LINE L2 3139 3272 0 334 293 80 27 chr3 137763235 137763423 -80273735 - Charlie8 DNA MER1_type -2092 325 128 195 114 0 0 chr3 137763457 137763492 -80273666 + (A)n Simple_repeat Simple_repeat 1 35 0 3698 179 118 27 chr3 137763729 137764519 -80272639 - MER21B LTR ERV1 -1 862 1 940 200 22 11 chr3 137764697 137764882 -80272276 + AluJo SINE Alu 1 187 -125 279 163 0 0 chr3 137764884 137764933 -80272225 + FLAM_A SINE Alu 84 132 -1 188 381 58 0 chr3 137765048 137765187 -80271971 - L2 LINE L2 -194 3078 2932 2610 55 0 0 chr3 137765200 137765511 -80271647 + AluY SINE Alu 1 311 0 1877 79 4 0 chr3 137766034 137766262 -80270896 - AluSg SINE Alu -46 264 36 402 221 12 0 chr3 137766908 137766994 -80270164 - L1MC4 LINE L1 -13 8029 7943 507 238 66 45 chr3 137767073 137767280 -80269878 - L1ME3 LINE L1 -268 5906 5698 22 35 0 0 chr3 137767820 137767849 -80269309 + AT_rich Low_complexity Low_complexity 1 29 0 274 316 116 42 chr3 137767904 137768094 -80269064 - MIR SINE MIR -58 204 1 213 152 0 0 chr3 137768178 137768211 -80268947 - MIR SINE MIR -112 150 118 221 140 37 28 chr3 137771074 137771181 -80265977 + (TA)n Simple_repeat Simple_repeat 1 108 0 271 234 126 27 chr3 137775095 137775206 -80261952 + MIR SINE MIR 21 142 -66 219 332 129 21 chr3 137779379 137779572 -80257586 + MIR SINE MIR 2 215 -47 1603 269 66 60 chr3 137780668 137781838 -80255320 + L1M4c LINE L1 684 1921 -4461 455 191 11 21 chr3 137781848 137781942 -80255216 - Tigger5 DNA MER2_type 0 2323 2231 239 154 0 154 chr3 137781947 137782012 -80255146 - Tigger5 DNA MER2_type -2268 55 1 426 315 126 26 chr3 137782012 137782249 -80254909 + L1M4c LINE L1 2020 2265 -4119 763 169 0 22 chr3 137782249 137782385 -80254773 + FLAM_A SINE Alu 1 133 0 426 315 126 26 chr3 137782385 137782463 -80254695 + L1M4c LINE L1 2265 2334 -4050 233 122 0 61 chr3 137782464 137782513 -80254645 - Charlie4 DNA MER1_type -1229 732 687 1132 247 66 9 chr3 137782520 137782853 -80254305 + L1M4c LINE L1 2391 2758 -3624 2048 151 3 0 chr3 137782853 137783157 -80254001 + AluSx SINE Alu 1 305 -7 1132 247 66 9 chr3 137783157 137783276 -80253882 + L1M4c LINE L1 2758 2869 -3513 415 219 42 0 chr3 137783294 137783390 -80253768 + L1MB8 LINE L1 6066 6165 -13 806 291 81 65 chr3 137783509 137783942 -80253216 + L1MEd LINE L1 328 752 -5377 369 0 0 0 chr3 137783942 137783983 -80253175 + (CAA)n Simple_repeat Simple_repeat 2 42 0 806 291 81 65 chr3 137783983 137785555 -80251603 + L1MEd LINE L1 752 2366 -3763 334 315 106 24 chr3 137785556 137785810 -80251348 + L1MDa LINE L1 21 295 -6245 6309 251 59 19 chr3 137786238 137788352 -80248806 + L1MDa LINE L1 2264 4453 -2087 2139 107 3 44 chr3 137788352 137788669 -80248489 - AluSx SINE Alu -8 304 1 6309 251 59 19 chr3 137788669 137788933 -80248225 + L1MDa LINE L1 4453 4705 -1835 1013 168 124 7 chr3 137788943 137789407 -80247751 - L1MA9 LINE L1 -33 6279 5663 309 169 0 0 chr3 137789407 137789490 -80247668 + (TA)n Simple_repeat Simple_repeat 1 83 0 2804 141 30 0 chr3 137789494 137789933 -80247225 - MSTB2 LTR MaLR -5 452 1 6779 158 30 27 chr3 137789934 137791618 -80245540 - L1MA9 LINE L1 -631 5681 3971 1145 149 5 86 chr3 137791618 137791888 -80245270 - AluJb SINE Alu 0 333 82 711 175 80 24 chr3 137791929 137791942 -80245216 - L1M2 LINE L1 -721 5445 5434 2692 48 0 0 chr3 137791942 137792253 -80244905 - AluY SINE Alu 0 311 1 711 175 80 24 chr3 137792253 137792446 -80244712 - L1M2 LINE L1 -732 5434 5264 2222 130 0 0 chr3 137792448 137792748 -80244410 - AluSx SINE Alu -12 300 1 1071 280 59 24 chr3 137792749 137793942 -80243216 - L1M4c LINE L1 -4311 2252 804 244 257 37 83 chr3 137794855 137794964 -80242194 - MIR SINE MIR -121 141 38 238 204 23 0 chr3 137795707 137795751 -80241407 + L2 LINE L2 3254 3298 -15 228 372 43 24 chr3 137796094 137796258 -80240900 - L2 LINE L2 -456 2858 2692 2171 99 20 0 chr3 137797519 137797812 -80239346 + AluSq SINE Alu 1 299 -14 634 304 20 29 chr3 137799733 137799937 -80237221 + MIR SINE MIR 57 258 -4 261 236 11 79 chr3 137801773 137801862 -80235296 + L2 LINE L2 3186 3268 -4 307 381 6 25 chr3 137802308 137802468 -80234690 - MER5A DNA MER1_type -30 159 3 221 240 40 80 chr3 137802526 137802601 -80234557 - L2 LINE L2 -15 3257 3186 25 31 0 0 chr3 137804015 137804047 -80233111 + AT_rich Low_complexity Low_complexity 1 32 0 477 317 69 59 chr3 137804521 137804912 -80232246 - L2 LINE L2 -47 3225 2831 334 283 94 50 chr3 137806511 137806691 -80230467 - MIR SINE MIR -55 207 20 22 0 0 0 chr3 137807120 137807142 -80230016 + AT_rich Low_complexity Low_complexity 1 22 0 232 246 18 0 chr3 137808510 137808567 -80228591 - L2 LINE L2 -37 3235 3178 285 222 0 0 chr3 137809343 137809397 -80227761 + L2 LINE L2 3255 3308 -5 256 347 0 20 chr3 137809534 137809632 -80227526 - 7SK RNA RNA -95 98 3 673 122 0 0 chr3 137810377 137810467 -80226691 + 5S rRNA rRNA 1 90 -31 241 211 39 0 chr3 137810487 137810539 -80226619 + L2 LINE L2 3259 3312 -1 2372 79 3 31 chr3 137811121 137811438 -80225720 + AluSg SINE Alu 1 308 -2 647 254 224 24 chr3 137812483 137812813 -80224345 + HAL1 LINE L1 4 399 -2108 574 241 235 8 chr3 137812842 137813201 -80223957 + HAL1 LINE L1 471 949 -1558 2325 243 126 11 chr3 137813203 137814044 -80223114 + HAL1 LINE L1 977 1914 -593 652 299 106 22 chr3 137814090 137814504 -80222654 + HAL1 LINE L1 2053 2501 -6 1701 215 72 32 chr3 137814588 137815030 -80222128 + LTR40b LTR ERVL 3 462 0 5906 196 82 19 chr3 137815119 137815393 -80221765 + L1MB7 LINE L1 3572 3827 -2357 1305 81 0 0 chr3 137815393 137815565 -80221593 + L1PA11 LINE L1 6003 6174 0 5906 196 82 19 chr3 137815565 137817738 -80219420 + L1MB7 LINE L1 3827 6177 -7 668 286 124 0 chr3 137818874 137819084 -80218074 - MIR SINE MIR -26 236 1 516 274 0 0 chr3 137819086 137819192 -80217966 + MER5B DNA MER1_type 69 174 -4 281 324 57 9 chr3 137819212 137819317 -80217841 - L2 LINE L2 -5 3267 3158 1619 271 112 66 chr3 137819388 137820558 -80216600 + L1MC4 LINE L1 6819 8042 0 1946 71 56 4 chr3 137821475 137821743 -80215415 + AluY SINE Alu 1 282 -29 458 87 0 0 chr3 137821743 137821763 -80215395 + AluYa8 SINE Alu 1 288 0 1110 218 25 39 chr3 137821771 137822056 -80215102 - LTR16C LTR ERVL -4 487 207 1464 254 65 59 chr3 137822693 137823467 -80213691 - L1MC4 LINE L1 0 8042 7265 288 319 8 8 chr3 137823463 137823582 -80213576 - L1MC4 LINE L1 -1916 5892 5774 * 6014 91 10 2 chr3 137823629 137824948 -80212210 - L1PA15 LINE L1 -4 6161 4802 351 338 49 46 chr3 137825064 137825369 -80211789 + L1MDa LINE L1 41 346 -6194 770 241 30 106 chr3 137825666 137826123 -80211035 + L1MDa LINE L1 782 1214 -5319 994 160 21 21 chr3 137826289 137826483 -80210675 - MER3 DNA MER1_type -15 194 1 522 332 72 50 chr3 137826489 137826974 -80210184 + L1MDa LINE L1 3000 3495 -3045 2241 113 0 0 chr3 137827088 137827399 -80209759 - AluSx SINE Alu -1 311 1 347 155 113 31 chr3 137827542 137827639 -80209519 + L1M4 LINE L1 4501 4605 -1541 393 229 92 48 chr3 137827665 137827957 -80209201 - L1MC5 LINE L1 -26 7935 7631 539 298 19 0 chr3 137828005 137828163 -80208995 + MIR SINE MIR 53 213 -49 1133 113 0 0 chr3 137828429 137828589 -80208569 + AluSc SINE Alu 1 160 -149 286 287 21 29 chr3 137828609 137828714 -80208444 + L1 LINE L1 2627 2733 -3413 750 263 21 5 chr3 137828783 137828969 -80208189 + LTR33 LTR ERVL 4 192 -329 * 1103 223 111 39 chr3 137828956 137829342 -80207816 + MER74B LTR ERVL 47 460 -162 1618 180 52 81 chr3 137830040 137830244 -80206914 + MSTB1 LTR MaLR 1 209 -223 2257 77 3 0 chr3 137830244 137830531 -80206627 + AluSg SINE Alu 3 290 -20 1618 180 52 81 chr3 137830531 137830771 -80206387 + MSTB1 LTR MaLR 209 432 0 635 216 83 28 chr3 137832940 137833121 -80204037 + MIR SINE MIR 48 238 -24 2328 71 0 16 chr3 137833248 137833556 -80203602 - AluSc SINE Alu -6 303 1 2072 115 7 3 chr3 137834612 137834908 -80202250 + AluSq SINE Alu 1 297 -16 603 280 132 32 chr3 137835509 137835887 -80201271 + MLT1L LTR MaLR 157 572 -43 406 241 35 0 chr3 137836158 137836245 -80200913 + MER58A DNA MER1_type 30 119 0 226 158 18 18 chr3 137836382 137836439 -80200719 - LTR66 LTR ERVL -170 440 384 358 275 47 20 chr3 137836449 137836598 -80200560 - L1MC4a LINE L1 -1926 5882 5730 1231 266 107 7 chr3 137837560 137838019 -80199139 - MLT1D LTR MaLR 0 505 1 550 94 21 42 chr3 137838824 137838920 -80198238 + L1MD1 LINE L1 6144 6237 -5 840 253 79 0 chr3 137839041 137839270 -80197888 + MIR SINE MIR 8 254 -8 458 243 124 106 chr3 137839384 137839815 -80197343 + HAL1 LINE L1 992 1414 -1093 1634 166 11 3 chr3 137839815 137840099 -80197059 + AluJo SINE Alu 5 290 -22 458 243 124 106 chr3 137840099 137840171 -80196987 + HAL1 LINE L1 1414 1483 -1024 1504 148 3 34 chr3 137840171 137840462 -80196696 + AluJo SINE Alu 31 312 0 458 243 124 106 chr3 137840462 137840620 -80196538 + HAL1 LINE L1 1483 1666 -841 972 209 202 36 chr3 137840620 137840922 -80196236 - MLT1H1 LTR MaLR 0 555 204 991 217 43 11 chr3 137841140 137841406 -80195752 - MLT1G LTR MaLR -286 269 1 605 207 178 72 chr3 137841406 137841767 -80195391 + HAL1 LINE L1 1664 2092 -415 1880 153 0 0 chr3 137841767 137842061 -80195097 + AluJb SINE Alu 1 294 -18 605 207 178 72 chr3 137842061 137842187 -80194971 + HAL1 LINE L1 2092 2203 -304 469 276 118 10 chr3 137842222 137842300 -80194858 + HAL1 LINE L1 2277 2345 -162 261 0 0 0 chr3 137842300 137842329 -80194829 + (CAA)n Simple_repeat Simple_repeat 2 30 0 469 276 118 10 chr3 137842329 137842453 -80194705 + HAL1 LINE L1 2345 2501 -6 309 297 160 30 chr3 137843283 137843677 -80193481 + L1MC4a LINE L1 5498 5942 -1866 3622 147 56 12 chr3 137843838 137844504 -80192654 + L1MB3 LINE L1 5486 6180 -3 256 328 0 0 chr3 137845139 137845203 -80191955 - MIR SINE MIR -109 153 90 2026 141 0 0 chr3 137845760 137846065 -80191093 + AluSx SINE Alu 1 305 -7 314 168 96 32 chr3 137846113 137846238 -80190920 + L1M4 LINE L1 3841 3973 -2173 543 307 13 22 chr3 137846281 137846512 -80190646 + L1MEc LINE L1 31 259 -6137 305 366 83 23 chr3 137846534 137846750 -80190408 + L1MEc LINE L1 333 561 -5835 1336 247 96 62 chr3 137846781 137847026 -80190132 + L1MEc LINE L1 673 908 -5488 1642 166 0 47 chr3 137847026 137847162 -80189996 + AluJo SINE Alu 1 142 -170 2111 105 3 0 chr3 137847162 137847448 -80189710 + AluSc SINE Alu 1 287 -22 1642 166 0 47 chr3 137847448 137847612 -80189546 + AluJo SINE Alu 142 287 -25 2227 84 0 7 chr3 137847620 137847916 -80189242 + AluY SINE Alu 1 294 -17 1336 247 96 62 chr3 137847916 137848309 -80188849 + L1MEc LINE L1 914 1342 -5054 284 308 90 24 chr3 137848397 137848608 -80188550 + LTR16A LTR ERVL 64 288 -162 764 304 72 7 chr3 137848810 137849155 -80188003 + L1MEc LINE L1 1371 1895 -4501 2295 73 0 0 chr3 137849159 137849445 -80187713 + AluSg SINE Alu 1 286 -24 2118 243 94 55 chr3 137849452 137850329 -80186829 + L1MEc LINE L1 2179 3095 -3120 2074 117 0 0 chr3 137850329 137850627 -80186531 + AluSx SINE Alu 1 298 -14 2118 243 94 55 chr3 137850627 137850660 -80186498 + L1MEc LINE L1 3095 3125 -3090 719 258 44 14 chr3 137850648 137850923 -80186235 + L1MEc LINE L1 4325 4607 -1608 * 321 235 82 20 chr3 137850940 137851038 -80186120 + L1MC5 LINE L1 7808 7911 -50 351 242 143 0 chr3 137851207 137851298 -80185860 + MIR SINE MIR 90 193 -69 547 272 106 0 chr3 137851848 137852028 -80185130 - MIR SINE MIR -60 202 4 414 0 0 0 chr3 137852131 137852177 -80184981 + (TTA)n Simple_repeat Simple_repeat 2 47 0 2011 111 4 0 chr3 137852179 137852459 -80184699 - AluSx SINE Alu -31 281 1 903 158 5 188 chr3 137854160 137854507 -80182651 - Charlie5 DNA MER1_type 0 2624 41 353 268 8 76 chr3 137854735 137854768 -80182390 - L1P2 LINE L1 -639 5515 5481 2182 63 3 57 chr3 137854768 137855085 -80182073 - AluY SINE Alu -11 300 1 353 268 8 76 chr3 137855085 137855183 -80181975 - L1P2 LINE L1 -673 5481 5390 1261 151 0 0 chr3 137855301 137855493 -80181665 + AluJb SINE Alu 1 192 -120 328 193 174 46 chr3 137855508 137855617 -80181541 + MIR SINE MIR 61 183 -79 196 304 0 29 chr3 137855705 137855774 -80181384 - L2 LINE L2 -13 3259 3193 428 250 135 14 chr3 137855803 137855951 -80181207 + HAL1 LINE L1 2041 2206 -301 188 290 108 11 chr3 137856168 137856261 -80180897 - MIR SINE MIR -87 121 20 1775 129 3 34 chr3 137856321 137856616 -80180542 - AluSx SINE Alu -11 301 16 256 311 85 9 chr3 137856711 137856817 -80180341 + MIR SINE MIR 97 210 -52 201 313 21 10 chr3 137856958 137857054 -80180104 + (TG)n Simple_repeat Simple_repeat 2 98 0 1571 191 154 0 chr3 137857062 137857430 -80179728 + Ricksha DNA DNA 9 510 -1935 690 180 6 25 chr3 137857431 137857592 -80179566 + Ricksha DNA DNA 3084 3241 -13 604 231 75 0 chr3 137857486 137857646 -80179512 - Ricksha DNA DNA -1872 174 3 * 229 264 18 0 chr3 137857648 137857758 -80179400 + (TG)n Simple_repeat Simple_repeat 2 113 0 402 242 67 40 chr3 137857762 137857911 -80179247 + MER67C LTR ERV1 7 159 -551 310 223 196 0 chr3 137857924 137858065 -80179093 - LTR8A LTR ERV1 -52 675 450 567 201 201 6 chr3 137858258 137858432 -80178726 + MER67C LTR ERV1 498 705 -5 5160 146 20 39 chr3 137858611 137858683 -80178475 + Tigger3b DNA MER2_type 5 77 -2951 2307 82 0 0 chr3 137858683 137858977 -80178181 + AluSx SINE Alu 1 294 -18 5160 146 20 39 chr3 137858977 137859162 -80177996 + Tigger3b DNA MER2_type 77 264 -2764 3937 123 2 0 chr3 137859162 137859715 -80177443 + MER41A LTR ERV1 1 554 0 5160 146 20 39 chr3 137859715 137860147 -80177011 + Tigger3b DNA MER2_type 264 675 -2353 2328 89 0 0 chr3 137860147 137860450 -80176708 + AluSg SINE Alu 1 303 -7 5160 146 20 39 chr3 137860450 137860718 -80176440 + Tigger3b DNA MER2_type 675 946 -285 2144 106 7 0 chr3 137860723 137861015 -80176143 - AluSx SINE Alu -18 294 1 299 139 0 0 chr3 137861015 137861058 -80176100 + MER57-int LTR ERV1 500 542 -6995 1157 64 0 0 chr3 137861072 137861212 -80175946 + MER57-int LTR ERV1 828 967 -6570 * 3903 143 44 9 chr3 137861204 137861976 -80175182 + MER57-int LTR ERV1 648 3601 -4215 533 222 17 0 chr3 137861978 137862095 -80175063 + MER57-int LTR ERV1 2511 2629 -4908 * 917 110 29 0 chr3 137862091 137862227 -80174931 + MER57-int LTR ERV1 2781 2920 -4617 * 24597 105 31 34 chr3 137862215 137862382 -80174776 + MER57-int LTR ERV1 3248 3414 -4123 2070 113 0 3 chr3 137862382 137862674 -80174484 + AluSg SINE Alu 1 291 -19 24597 105 31 34 chr3 137862674 137863055 -80174103 + MER57-int LTR ERV1 3414 3794 -3743 1927 149 3 13 chr3 137863055 137863364 -80173794 + AluSx SINE Alu 1 306 -6 24597 105 31 34 chr3 137863364 137863857 -80173301 + MER57-int LTR ERV1 3794 4287 -3250 2291 99 3 0 chr3 137863857 137864169 -80172989 - AluSp SINE Alu 0 313 1 24597 105 31 34 chr3 137864169 137864925 -80172233 + MER57-int LTR ERV1 4287 5043 -2494 2220 112 0 0 chr3 137864925 137865230 -80171928 + AluSx SINE Alu 1 305 -7 24597 105 31 34 chr3 137865230 137865964 -80171194 + MER57-int LTR ERV1 5043 5777 -1760 2132 109 0 0 chr3 137865964 137866281 -80170877 - AluSx SINE Alu 0 317 1 24597 105 31 34 chr3 137866281 137867141 -80170017 + MER57-int LTR ERV1 5777 6636 -901 2104 91 0 17 chr3 137867141 137867439 -80169719 + AluSg SINE Alu 1 293 -17 24597 105 31 34 chr3 137867439 137867951 -80169207 + MER57-int LTR ERV1 6636 7148 -389 499 195 23 31 chr3 137867953 137868081 -80169077 + LTR54B LTR ERV1 5 131 -367 1541 91 121 4 chr3 137868081 137868312 -80168846 + MER57B-int LTR ERV1 7279 7536 -1 329 89 0 71 chr3 137868314 137868370 -80168788 + MER57B LTR ERV1 1 52 -382 * 975 73 58 0 chr3 137868355 137868492 -80168666 + MER57B LTR ERV1 290 434 0 225 0 0 0 chr3 137868682 137868707 -80168451 + (CCCTG)n Simple_repeat Simple_repeat 5 29 0 838 150 0 0 chr3 137869186 137869313 -80167845 + FLAM_C SINE Alu 3 129 -4 1663 136 48 62 chr3 137869591 137869776 -80167382 - L1M4b LINE L1 -5206 1653 1474 1964 113 3 0 chr3 137869776 137870059 -80167099 + AluSc SINE Alu 15 298 -11 1663 136 48 62 chr3 137870059 137870247 -80166911 - L1M4b LINE L1 -5385 1474 1285 621 184 55 0 chr3 137870249 137870358 -80166800 - FLAM_C SINE Alu -25 118 4 4767 217 23 11 chr3 137870368 137871293 -80165865 - L1M4b LINE L1 -5561 1298 363 900 202 26 16 chr3 137871324 137871517 -80165641 + MER58A DNA MER1_type 19 213 -11 623 240 80 11 chr3 137871519 137871694 -80165464 + L1ME3A LINE L1 5962 6148 -22 225 276 92 0 chr3 137871723 137871810 -80165348 + HAL1 LINE L1 47 141 -2366 393 146 45 45 chr3 137871999 137872088 -80165070 - HAL1 LINE L1 -849 1658 1570 2205 100 3 6 chr3 137872233 137872544 -80164614 + AluSg SINE Alu 1 310 0 846 156 0 29 chr3 137872545 137872718 -80164440 + MER53 DNA DNA 22 189 0 229 252 245 7 chr3 137872722 137872865 -80164293 + HAL1 LINE L1 456 632 -1875 2609 261 71 25 chr3 137872886 137873905 -80163253 + HAL1 LINE L1 1442 2506 -1 1062 174 13 125 chr3 137873924 137874309 -80162849 + L1M4 LINE L1 4964 5305 -841 1208 165 0 19 chr3 137874320 137874532 -80162626 + AluJo SINE Alu 16 223 -89 643 107 91 16 chr3 137874532 137874606 -80162552 + L1MB3 LINE L1 6054 6142 -41 2200 99 0 3 chr3 137874606 137874900 -80162258 - AluSx SINE Alu -19 293 1 643 107 91 16 chr3 137874900 137874946 -80162212 + L1MB3 LINE L1 6142 6183 0 204 233 23 0 chr3 137875029 137875072 -80162086 + MER5A DNA MER1_type 63 106 -83 198 167 0 0 chr3 137875486 137875522 -80161636 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 256 318 104 26 chr3 137875574 137875728 -80161430 - L2 LINE L2 -182 3090 2925 887 259 141 38 chr3 137875954 137876374 -80160784 + MLT1J LTR MaLR 6 468 -43 2104 97 72 3 chr3 137876374 137876723 -80160435 - L1MA7 LINE L1 0 6291 5919 1959 135 0 3 chr3 137876745 137877041 -80160117 - AluSx SINE Alu -17 295 1 2806 119 82 30 chr3 137877042 137877190 -80159968 - L1MA7 LINE L1 -566 5725 5586 2234 101 3 13 chr3 137877190 137877506 -80159652 - AluSq SINE Alu 0 313 1 2806 119 82 30 chr3 137877506 137877739 -80159419 - L1MA7 LINE L1 -705 5586 5367 1466 154 131 0 chr3 137877739 137877998 -80159160 - AluJo SINE Alu -9 293 1 2806 119 82 30 chr3 137877998 137878466 -80158692 - L1MA7 LINE L1 -924 5367 4823 492 273 53 0 chr3 137878827 137878977 -80158181 + L2 LINE L2 1074 1231 -2083 1599 280 96 24 chr3 137879234 137879859 -80157299 + L2 LINE L2 1303 1972 -1342 1073 192 73 73 chr3 137879878 137880180 -80156978 + MER102b DNA MER1_type 39 340 -1 2187 96 30 0 chr3 137880671 137880972 -80156186 - AluSx SINE Alu -2 310 1 2069 122 3 0 chr3 137881010 137881304 -80155854 - AluSx SINE Alu -17 295 1 1845 121 24 65 chr3 137881731 137882069 -80155089 + MLT1B LTR MaLR 1 324 -66 5075 209 66 41 chr3 137882312 137883606 -80153552 + L1MB7 LINE L1 2 1327 -5215 1680 101 4 0 chr3 137883607 137883835 -80153323 + AluSp SINE Alu 1 229 -84 4752 202 78 39 chr3 137883835 137884406 -80152752 + L1MB7 LINE L1 3523 4070 -2574 2437 45 0 22 chr3 137884406 137884720 -80152438 + AluY SINE Alu 1 307 -4 4752 202 78 39 chr3 137884720 137885129 -80152029 + L1MB7 LINE L1 4070 4462 -2182 1913 113 4 4 chr3 137885129 137885403 -80151755 + AluSx SINE Alu 39 312 0 4752 202 78 39 chr3 137885403 137886385 -80150773 + L1MB7 LINE L1 4462 5700 -944 1195 68 0 0 chr3 137886386 137886532 -80150626 + AluSg SINE Alu 1 146 -164 4400 167 47 20 chr3 137886536 137887494 -80149664 + L1MB7 LINE L1 5686 6666 -16 407 205 91 89 chr3 137888511 137888623 -80148535 + MIR SINE MIR 52 160 -102 2142 115 0 0 chr3 137888623 137888919 -80148239 + AluSx SINE Alu 1 296 -16 407 205 91 89 chr3 137888919 137888992 -80148166 + MIR SINE MIR 160 231 -31 348 266 105 8 chr3 137889223 137889347 -80147811 - MIR SINE MIR -17 245 110 2299 97 0 0 chr3 137889347 137889647 -80147511 - AluSg SINE Alu -10 300 1 5177 164 121 6 chr3 137889776 137890690 -80146468 - LTR28 LTR ERV1 0 1020 1 827 283 147 32 chr3 137890791 137891165 -80145993 + MLT1K LTR MaLR 158 574 -14 1222 214 106 31 chr3 137891504 137891854 -80145304 + MLT2C1 LTR ERVL 2 377 -20 304 233 67 0 chr3 137891883 137891943 -80145215 - MER2 DNA MER2_type -2 343 280 2049 113 14 0 chr3 137891948 137892240 -80144918 + AluSq SINE Alu 1 296 -17 1100 119 41 101 chr3 137892272 137892491 -80144667 - MER2 DNA MER2_type -139 206 1 275 105 0 33 chr3 137892491 137892544 -80144614 + MLT2C1 LTR ERVL 363 397 0 431 306 70 21 chr3 137892972 137893158 -80144000 + MLT1J LTR MaLR 81 275 -236 1669 83 167 4 chr3 137893320 137893584 -80143574 - AluSg1 SINE Alu -2 307 1 203 269 164 102 chr3 137893684 137893942 -80143216 + L2 LINE L2 2076 2363 -951 249 57 0 0 chr3 137893942 137893977 -80143181 + (CA)n Simple_repeat Simple_repeat 1 35 0 203 269 164 102 chr3 137893977 137894071 -80143087 + L2 LINE L2 2363 2450 -864 677 279 101 27 chr3 137894076 137894295 -80142863 - MER102a DNA MER1_type 0 330 96 2233 107 0 0 chr3 137895115 137895413 -80141745 + AluSx SINE Alu 2 299 -13 268 81 0 0 chr3 137895545 137895582 -80141576 + tRNA-Cys-TGC tRNA tRNA 1 37 -38 2037 116 16 3 chr3 137896290 137896593 -80140565 - AluSx SINE Alu -5 307 1 24 67 0 0 chr3 137896881 137896926 -80140232 + AT_rich Low_complexity Low_complexity 1 45 0 1909 122 0 26 chr3 137897186 137897490 -80139668 - AluJb SINE Alu -16 296 1 234 213 66 0 chr3 137897967 137898028 -80139130 + MER102a DNA MER1_type 262 326 -4 192 267 267 0 chr3 137898704 137898794 -80138364 - L2 LINE L2 -8 3305 3192 180 77 0 0 chr3 137899083 137899109 -80138049 + (CGCGG)n Simple_repeat Simple_repeat 4 29 0 183 42 0 0 chr3 137899163 137899187 -80137971 + (CCGCG)n Simple_repeat Simple_repeat 1 24 0 228 306 35 12 chr3 137900492 137900577 -80136581 + MIR SINE MIR 8 94 -168 2210 108 10 0 chr3 137903696 137904001 -80133157 - AluSg SINE Alu -2 308 1 256 227 241 21 chr3 137904188 137904329 -80132829 + MIR SINE MIR 87 258 -4 1937 102 7 14 chr3 137904348 137904643 -80132515 + AluSx SINE Alu 5 297 -15 457 216 9 36 chr3 137904673 137904784 -80132374 + MIR SINE MIR 61 168 -94 2445 58 0 19 chr3 137904971 137905283 -80131875 - AluY SINE Alu -5 306 1 1473 128 69 49 chr3 137905349 137905655 -80131503 + AluJo SINE Alu 1 312 0 1975 113 24 3 chr3 137905965 137906257 -80130901 + AluSg SINE Alu 2 299 -11 339 329 167 21 chr3 137907621 137907861 -80129297 - L1MC4a LINE L1 -1921 5887 5613 225 313 34 43 chr3 137907891 137908000 -80129158 + MIR SINE MIR 20 129 -79 2119 82 7 7 chr3 137910111 137910404 -80126754 - AluSg1 SINE Alu -16 293 1 1509 145 19 55 chr3 137911128 137911439 -80125719 + AluJo SINE Alu 1 300 -12 2256 71 0 19 chr3 137912502 137912811 -80124347 - AluY SINE Alu -8 303 1 1913 142 0 3 chr3 137913197 137913493 -80123665 - AluJb SINE Alu -17 295 1 381 277 43 14 chr3 137915541 137915682 -80121476 - MER58A DNA MER1_type 0 160 16 1070 160 163 28 chr3 137915799 137916081 -80121077 - MER33 DNA MER1_type 0 324 5 221 270 22 22 chr3 137917919 137918008 -80119150 - MIR SINE MIR -78 130 42 392 231 90 36 chr3 137919716 137919919 -80117239 - MIR SINE MIR -32 230 16 202 262 0 33 chr3 137920529 137920590 -80116568 + L2 LINE L2 2965 3023 -249 353 275 153 26 chr3 137920591 137920780 -80116378 + L1MC4a LINE L1 5724 5936 -1872 * 1668 212 152 16 chr3 137920778 137921303 -80115855 + L1ME2 LINE L1 5540 6138 -26 2265 96 3 10 chr3 137921330 137921644 -80115514 + AluSp SINE Alu 1 312 -1 1242 75 81 0 chr3 137921846 137922019 -80115139 - U2 snRNA snRNA -1 187 1 22 56 0 0 chr3 137923798 137923834 -80113324 + GC_rich Low_complexity Low_complexity 1 36 0 23 68 0 0 chr3 137923840 137923884 -80113274 + GC_rich Low_complexity Low_complexity 1 44 0 229 158 132 66 chr3 137924880 137924956 -80112202 + MER74B LTR ERVL 107 187 -435 266 294 157 20 chr3 137926078 137926180 -80110978 + MIR SINE MIR 2 117 -145 577 149 161 15 chr3 137926905 137927062 -80110096 + L1MC3 LINE L1 6887 7019 -766 324 195 46 11 chr3 137927095 137927182 -80109976 + MLT1F1 LTR MaLR 36 125 -442 2989 166 49 18 chr3 137927191 137927758 -80109400 + L1MC3 LINE L1 7201 7785 0 2310 68 3 0 chr3 137929602 137929894 -80107264 + AluSp SINE Alu 1 293 -20 185 233 0 0 chr3 137929952 137929995 -80107163 + L2 LINE L2 3266 3308 -5 21 0 0 31 chr3 137930139 137930156 -80107002 + AT_rich Low_complexity Low_complexity 1 18 -13 2212 92 0 0 chr3 137930156 137930448 -80106710 + AluSx SINE Alu 1 292 -20 21 0 0 31 chr3 137930448 137930462 -80106696 + AT_rich Low_complexity Low_complexity 18 31 0 343 275 211 32 chr3 137930467 137930718 -80106440 + L1MC4a LINE L1 5549 5844 -1964 770 189 0 0 chr3 137931059 137931191 -80105967 + FLAM_C SINE Alu 2 133 -10 186 238 295 0 chr3 137931208 137931313 -80105845 - MIR SINE MIR -25 237 102 1048 209 65 36 chr3 137931560 137931866 -80105292 + MER2 DNA MER2_type 6 320 -25 23 0 0 0 chr3 137932295 137932318 -80104840 + AT_rich Low_complexity Low_complexity 1 23 0 182 339 73 9 chr3 137933267 137933376 -80103782 + MIR SINE MIR 70 185 -77 346 269 9 56 chr3 137934380 137934488 -80102670 + Charlie8 DNA MER1_type 3 105 -2312 1951 113 3 0 chr3 137934490 137934795 -80102363 - AluSq SINE Alu 0 306 1 4458 201 20 10 chr3 137934797 137936345 -80100813 - L1MB4 LINE L1 -350 5830 4265 765 244 0 12 chr3 137936351 137936540 -80100618 - FRAM SINE Alu 0 176 1 1031 155 61 14 chr3 137936541 137936754 -80100404 - L1MB4 LINE L1 -1878 4268 4046 5819 196 60 23 chr3 137937143 137938706 -80098452 - L1ME LINE L1 -716 5454 3828 322 270 103 16 chr3 137938710 137938836 -80098322 - L1ME LINE L1 -3132 3014 2878 182 330 64 11 chr3 137939276 137939370 -80097788 - MIR SINE MIR -76 132 34 855 250 46 25 chr3 137939870 137940110 -80097048 + MIR SINE MIR 18 262 0 368 329 48 14 chr3 137941872 137942018 -80095140 - L2 LINE L2 0 3272 3122 1155 169 14 5 chr3 137942753 137942960 -80094198 - MER3 DNA MER1_type 0 209 1 341 351 255 5 chr3 137944800 137945008 -80092150 - MIR SINE MIR 0 262 3 345 197 102 75 chr3 137945554 137945701 -80091457 - MIR SINE MIR -1 261 111 271 206 0 22 chr3 137946494 137946586 -80090572 + GA-rich Low_complexity Low_complexity 2 91 0 390 361 57 31 chr3 137946881 137947125 -80090033 - MIR SINE MIR -12 250 4 285 195 85 0 chr3 137948850 137948932 -80088226 - L1ME4a LINE L1 -2 6119 6031 385 202 44 18 chr3 137948977 137949091 -80088067 - L1ME4a LINE L1 -233 5888 5772 245 213 244 47 chr3 137949179 137949306 -80087852 + MIR SINE MIR 111 262 0 395 293 7 7 chr3 137949538 137949678 -80087480 - L1ME4a LINE L1 -352 5769 5630 2564 30 0 3 chr3 137949685 137949986 -80087172 - AluY SINE Alu -11 300 1 307 387 17 0 chr3 137950082 137950201 -80086957 + L2 LINE L2 3118 3238 -34 275 217 123 37 chr3 137950724 137950826 -80086332 - MER113 DNA MER1_type? -76 445 353 737 229 115 43 chr3 137950826 137951149 -80086009 + MER7A DNA MER2_type 3 346 0 275 217 123 37 chr3 137951149 137951268 -80085890 - MER113 DNA MER1_type? -168 353 157 239 227 239 34 chr3 137951503 137951591 -80085567 + MIR SINE MIR 92 197 -65 1972 110 3 3 chr3 137951658 137951972 -80085186 - AluSx SINE Alu 0 314 1 547 100 50 0 chr3 137952074 137952154 -80085004 - U6 snRNA snRNA -23 84 1 1738 181 61 41 chr3 137952666 137952962 -80084196 - MLT1D LTR MaLR 0 505 198 1889 147 0 0 chr3 137952962 137953255 -80083903 - AluSx SINE Alu -17 295 3 1738 181 61 41 chr3 137953255 137953350 -80083808 - MLT1D LTR MaLR -307 198 106 959 110 0 14 chr3 137953351 137953497 -80083661 - AluSg/x SINE Alu -12 300 157 195 234 43 0 chr3 137953698 137953745 -80083413 + L2 LINE L2 114 162 -3152 606 343 103 8 chr3 137954037 137954396 -80082762 - L2 LINE L2 0 3313 2921 2136 105 3 0 chr3 137955372 137955668 -80081490 + AluSx SINE Alu 1 297 -15 338 321 22 66 chr3 137955676 137955813 -80081345 - MIR3 SINE MIR -48 160 29 845 262 110 21 chr3 137955904 137956382 -80080776 + MLT1K LTR MaLR 2 557 -31 12652 34 3 0 chr3 137956900 137958812 -80078346 - L1P1 LINE L1 -379 5776 3859 17454 44 5 1 chr3 137958958 137961140 -80076018 + L1P LINE L1 2124 4312 -1834 414 266 57 0 chr3 137961794 137961918 -80075240 - MIR SINE MIR -87 175 45 420 224 128 6 chr3 137962637 137962793 -80074365 - HAL1 LINE L1 -107 2400 2226 415 261 77 58 chr3 137963049 137963309 -80073849 + L2 LINE L2 2564 2828 -486 294 374 118 0 chr3 137963844 137964031 -80073127 - MIR SINE MIR -48 214 6 475 194 11 0 chr3 137964784 137964877 -80072281 + L1ME4a LINE L1 5654 5747 -374 451 204 110 101 chr3 137964894 137965202 -80071956 + L1ME4a LINE L1 5802 6112 -9 345 306 73 0 chr3 137966004 137966128 -80071030 - MIR SINE MIR -107 155 23 1253 171 115 28 chr3 137966151 137966438 -80070720 + MER2 DNA MER2_type 33 344 -1 357 247 61 3 chr3 137967072 137967214 -80069944 + MIR SINE MIR 4 147 -61 304 58 19 19 chr3 137968140 137968192 -80068966 + (CA)n Simple_repeat Simple_repeat 2 53 0 22 0 0 0 chr3 137968386 137968408 -80068750 + AT_rich Low_complexity Low_complexity 1 22 0 2287 89 0 7 chr3 137968422 137968726 -80068432 + AluSx SINE Alu 1 302 -10 682 293 78 29 chr3 137969092 137969399 -80067759 - L2 LINE L2 0 3313 2992 216 0 0 0 chr3 137971346 137971370 -80065788 + (TGGGGG)n Simple_repeat Simple_repeat 4 27 0 819 121 9 0 chr3 137971622 137971738 -80065420 + AluSg/x SINE Alu 154 270 -40 549 237 42 8 chr3 137971880 137971998 -80065160 + L2 LINE L2 3165 3286 -27 635 216 31 84 chr3 137972228 137972455 -80064703 - MIR SINE MIR -33 229 15 214 208 59 89 chr3 137973259 137973360 -80063798 + L3 LINE CR1 1324 1421 -156 231 111 0 28 chr3 137973757 137973793 -80063365 - MLT1D LTR MaLR -463 42 8 576 300 63 30 chr3 137973828 137974128 -80063030 - MLT1K LTR MaLR -255 333 24 181 262 0 0 chr3 137974191 137974233 -80062925 - MIR SINE MIR -171 91 50 321 287 76 16 chr3 137975057 137975281 -80061877 + MLT1K LTR MaLR 127 430 -158 280 314 116 42 chr3 137975588 137976107 -80061051 + L2 LINE L2 2485 3040 -232 697 218 79 50 chr3 137976127 137976468 -80060690 + MLT1J2 LTR MaLR 20 437 -13 344 348 32 32 chr3 137976502 137976660 -80060498 + L2 LINE L2 3108 3265 -7 269 215 31 0 chr3 137977248 137977313 -80059845 + GA-rich Low_complexity Low_complexity 2 68 0 435 303 65 65 chr3 137977642 137977952 -80059206 + MLT1L LTR MaLR 142 451 -164 8379 185 31 9 chr3 137978075 137979882 -80057276 - L1 LINE L1 -912 5234 3388 243 187 55 33 chr3 137979888 137979979 -80057179 - L1MDa LINE L1 -3966 2574 2482 840 240 0 0 chr3 137979980 137980134 -80057024 - AluJb SINE Alu -1 311 158 4276 150 56 40 chr3 137980348 137980812 -80056346 - L1MB8 LINE L1 -9 6169 5714 822 142 22 30 chr3 137980812 137980946 -80056212 - FLAM_C SINE Alu 0 133 1 4276 150 56 40 chr3 137980946 137981775 -80055383 - L1MB8 LINE L1 -464 5714 4856 707 179 45 15 chr3 137981958 137982092 -80055066 + MER20 DNA MER1_type 2 139 -80 2265 110 3 0 chr3 137982755 137983086 -80054072 - AluSx SINE Alu 0 332 1 631 293 22 56 chr3 137985127 137985359 -80051799 + L1ME3A LINE L1 5941 6164 0 446 247 86 25 chr3 137985461 137985623 -80051535 + MER5B DNA MER1_type 4 175 -3 3537 204 31 39 chr3 137986441 137987335 -80049823 - L1MB8 LINE L1 -2 6176 5290 1647 181 25 31 chr3 137987336 137987689 -80049469 - L1PA16 LINE L1 -7 6159 5809 5230 158 29 0 chr3 137987953 137988805 -80048353 + L1M1 LINE L1 1541 2417 -5148 2231 122 0 0 chr3 137988805 137989116 -80048042 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr3 137989141 137989162 -80047996 + AT_rich Low_complexity Low_complexity 1 21 0 241 269 0 30 chr3 137989328 137989395 -80047763 + L2 LINE L2 3205 3269 -3 614 254 89 42 chr3 137990170 137990406 -80046752 - MIR SINE MIR 0 262 16 1721 204 17 59 chr3 137990504 137990911 -80046247 - MLT1B LTR MaLR 0 390 1 21 0 0 0 chr3 137991177 137991198 -80045960 + AT_rich Low_complexity Low_complexity 1 21 0 635 239 83 88 chr3 137991555 137991998 -80045160 + L1MC5 LINE L1 7492 7932 -29 1861 185 34 62 chr3 137992044 137992509 -80044649 + MLT1D LTR MaLR 52 503 -2 429 194 62 54 chr3 137992666 137992795 -80044363 - FAM SINE Alu -24 161 32 245 279 0 0 chr3 137993160 137993228 -80043930 + T-rich Low_complexity Low_complexity 1 68 0 3204 213 61 19 chr3 137993309 137994935 -80042223 - L1MCa LINE L1 -3210 3005 1409 302 304 105 12 chr3 137995419 137995590 -80041568 - L2 LINE L2 -492 2822 2636 205 234 0 78 chr3 137995765 137995842 -80041316 - MIR3 SINE MIR -132 76 6 300 180 33 16 chr3 137996063 137996124 -80041034 - MIR SINE MIR -3 259 198 389 288 22 43 chr3 137996372 137996511 -80040647 - MIR SINE MIR -106 156 21 284 255 217 9 chr3 137996557 137996663 -80040495 + MIR3 SINE MIR 58 185 -23 537 79 13 0 chr3 137996865 137996941 -80040217 - AluSp/q SINE Alu -7 306 230 332 275 101 7 chr3 137999212 137999350 -80037808 - MIR3 SINE MIR -49 159 9 1052 156 16 42 chr3 137999678 137999870 -80037288 + AluSx SINE Alu 1 187 -125 549 114 0 0 chr3 137999871 137999941 -80037217 + AluSg SINE Alu 54 123 -187 2063 127 3 3 chr3 137999943 138000242 -80036916 + AluSx SINE Alu 1 299 -13 1640 151 40 10 chr3 138000255 138000553 -80036605 + AluJb SINE Alu 1 307 -5 1507 153 109 3 chr3 138000553 138000847 -80036311 - Tigger3(Golem) DNA MER2_type -2704 325 1 478 235 148 0 chr3 138001138 138001287 -80035871 - L1MC4 LINE L1 0 8042 7872 34 0 0 0 chr3 138001368 138001402 -80035756 + AT_rich Low_complexity Low_complexity 1 34 0 187 364 36 9 chr3 138001403 138001513 -80035645 - L2 LINE L2 -1262 2052 1940 2059 105 45 3 chr3 138001729 138002015 -80035143 - AluSx SINE Alu -14 298 1 1819 128 6 70 chr3 138002103 138002430 -80034728 - AluJb SINE Alu -6 306 1 312 233 35 12 chr3 138002532 138002618 -80034540 - L1MEd LINE L1 -6029 90 3 2486 69 0 3 chr3 138003600 138003903 -80033255 + AluY SINE Alu 1 302 -9 214 305 49 12 chr3 138003972 138004054 -80033104 + MIR SINE MIR 121 205 -57 224 339 17 0 chr3 138004654 138004740 -80032418 + MIR SINE MIR 61 150 -72 2681 214 29 6 chr3 138004963 138005970 -80031188 - L1 LINE L1 -2553 3593 2296 1028 344 73 36 chr3 138006433 138007312 -80029846 - HERVL LTR ERVL -628 5026 4116 669 265 82 41 chr3 138007496 138007599 -80029559 - L1MC4a LINE L1 -1929 5879 5782 2370 87 3 6 chr3 138007599 138007910 -80029248 - AluSg SINE Alu 0 310 1 669 265 82 41 chr3 138007910 138008123 -80029035 - L1MC4a LINE L1 -2026 5782 5550 2258 114 7 0 chr3 138008266 138008573 -80028585 - AluSc SINE Alu 0 309 1 334 219 137 0 chr3 138008969 138009042 -80028116 - MIR3 SINE MIR -42 166 84 964 183 11 5 chr3 138009377 138009568 -80027590 + L1MA4A LINE L1 6101 6292 -11 25 31 0 0 chr3 138009569 138009601 -80027557 + AT_rich Low_complexity Low_complexity 1 32 0 324 313 10 0 chr3 138009635 138009734 -80027424 + L1M4 LINE L1 2213 2312 -3834 2127 94 0 4 chr3 138009765 138010042 -80027116 - L1PA7 LINE L1 -5 6149 5874 1070 246 4 4 chr3 138010042 138010314 -80026844 + L1P LINE L1 4287 4558 -1588 308 234 13 0 chr3 138010311 138010388 -80026770 - L1P LINE L1 -3213 2933 2856 * 319 359 6 17 chr3 138010601 138010782 -80026376 + G-rich Low_complexity Low_complexity 1 179 0 241 245 0 0 chr3 138010810 138010863 -80026295 + GA-rich Low_complexity Low_complexity 4 56 0 23 0 0 0 chr3 138012221 138012244 -80024914 + AT_rich Low_complexity Low_complexity 1 23 0 401 253 149 19 chr3 138012348 138012502 -80024656 - MIR SINE MIR -87 175 2 308 255 128 27 chr3 138012916 138013065 -80024093 - MIR SINE MIR -18 244 81 1870 157 20 0 chr3 138013448 138013742 -80023416 - AluSx SINE Alu -11 301 2 2353 99 0 6 chr3 138013773 138014086 -80023072 - AluY SINE Alu 0 311 1 333 342 52 13 chr3 138014487 138014642 -80022516 + L3 LINE CR1 523 683 -894 230 361 37 9 chr3 138014855 138014963 -80022195 - MIR3 SINE MIR -89 119 9 648 267 223 33 chr3 138015929 138016389 -80020769 - L2 LINE L2 -3 3310 2768 244 326 226 13 chr3 138017862 138018092 -80019066 - L2 LINE L2 0 3272 2994 261 280 43 11 chr3 138018125 138018218 -80018940 - MIR SINE MIR -67 141 46 1057 184 21 17 chr3 138018255 138018489 -80018669 - AluY SINE Alu -5 306 72 767 206 56 39 chr3 138018902 138019082 -80018076 + AluJb SINE Alu 115 297 -15 319 187 13 27 chr3 138019093 138019168 -80017990 + LTR37A LTR ERV1 297 370 -56 234 266 70 16 chr3 138019244 138019372 -80017786 + L1MB8 LINE L1 5813 5947 -231 862 216 31 0 chr3 138019637 138019799 -80017359 + AluJo SINE Alu 5 171 -141 475 177 0 0 chr3 138019799 138019878 -80017280 - AluSg/x SINE Alu -50 250 172 2681 162 89 0 chr3 138020257 138020682 -80016476 - MLT1C LTR MaLR 0 467 5 2172 210 23 41 chr3 138020915 138021429 -80015729 + MLT1D LTR MaLR 1 505 0 2102 137 0 3 chr3 138022319 138022625 -80014533 - AluY SINE Alu -6 305 1 273 109 0 0 chr3 138022625 138022671 -80014487 - L1M3f LINE L1 -4299 1029 984 * 1039 132 20 0 chr3 138022663 138022815 -80014343 - L1M3f LINE L1 -4752 576 422 204 290 43 43 chr3 138023947 138024016 -80013142 + MIR SINE MIR 32 100 -162 3871 115 10 10 chr3 138024354 138024964 -80012194 - L1M1 LINE L1 -4111 3454 2845 1951 127 3 3 chr3 138024965 138025271 -80011887 - AluSx SINE Alu 0 306 1 978 173 6 22 chr3 138025286 138025465 -80011693 + FRAM SINE Alu 1 168 -8 794 194 0 0 chr3 138025506 138025635 -80011523 + FLAM_A SINE Alu 2 130 -3 29 0 0 0 chr3 138025746 138025775 -80011383 + AT_rich Low_complexity Low_complexity 1 29 0 1232 191 40 0 chr3 138025986 138026258 -80010900 - L1M4 LINE L1 -3129 3017 2735 187 148 0 0 chr3 138026612 138026639 -80010519 + L2 LINE L2 3262 3288 -25 1736 239 60 21 chr3 138026640 138027126 -80010032 + MLT1J LTR MaLR 4 508 -3 738 192 20 33 chr3 138027138 138027289 -80009869 + AluJo SINE Alu 2 150 -162 1366 236 63 8 chr3 138027394 138027776 -80009382 + L1M4 LINE L1 4110 4512 -1634 810 196 33 0 chr3 138027783 138027936 -80009222 + AluJo SINE Alu 144 301 -11 538 209 286 15 chr3 138027938 138028134 -80009024 + MER46C DNA MER2_type 1 249 -89 22 70 0 0 chr3 138028165 138028208 -80008950 + AT_rich Low_complexity Low_complexity 1 43 0 440 139 0 76 chr3 138028310 138028389 -80008769 - AluSp/q SINE Alu -5 308 236 303 131 16 66 chr3 138028391 138028452 -80008706 - L1MB5 LINE L1 -251 5923 5866 560 198 0 10 chr3 138028453 138028549 -80008609 - FRAM SINE Alu -19 157 63 358 302 8 23 chr3 138028796 138028925 -80008233 - MER5B DNA MER1_type -1 177 51 383 287 16 8 chr3 138030036 138030165 -80006993 - Charlie8 DNA MER1_type -2152 265 136 711 186 73 25 chr3 138030317 138030534 -80006624 + MLT1A2 LTR MaLR 1 215 -150 530 119 0 0 chr3 138030737 138030804 -80006354 + AluS SINE Alu 2 68 -244 428 101 53 24 chr3 138030811 138030980 -80006178 + (TA)n Simple_repeat Simple_repeat 1 174 0 409 41 103 14 chr3 138031036 138031181 -80005977 + (TA)n Simple_repeat Simple_repeat 2 159 0 7053 106 38 5 chr3 138031401 138032658 -80004500 - L1PBa LINE L1 -4449 2414 973 259 347 159 15 chr3 138032837 138033108 -80004050 + L3 LINE CR1 211 520 -1057 302 353 15 30 chr3 138033126 138033259 -80003899 + L2 LINE L2 3134 3264 -8 237 336 23 23 chr3 138033254 138033385 -80003773 + L3 LINE CR1 522 652 -925 * 367 174 163 11 chr3 138033536 138033628 -80003530 + L1M4 LINE L1 4911 5016 -1130 6722 116 16 1 chr3 138034111 138035081 -80002077 + Tigger1 DNA MER2_type 1434 2417 -1 758 285 97 51 chr3 138035778 138036337 -80000821 - L2 LINE L2 -5 3308 2712 270 151 19 0 chr3 138036499 138036552 -80000606 - L1MC/D LINE L1 -859 5474 5421 259 283 0 4 chr3 138036571 138036686 -80000472 + L2 LINE L2 2634 2796 -518 306 266 0 0 chr3 138036709 138036837 -80000321 + (CA)n Simple_repeat Simple_repeat 1 128 0 212 266 0 11 chr3 138036859 138036953 -80000205 + (CA)n Simple_repeat Simple_repeat 1 93 0 258 241 0 0 chr3 138036980 138037067 -80000091 + (CA)n Simple_repeat Simple_repeat 1 87 0 366 173 0 0 chr3 138037111 138037186 -79999972 + (CA)n Simple_repeat Simple_repeat 2 76 0 502 262 200 10 chr3 138037186 138037551 -79999607 + L2 LINE L2 2819 3297 -16 403 220 46 77 chr3 138037838 138038030 -79999128 + MIR SINE MIR 3 142 -66 21 0 0 0 chr3 138038403 138038424 -79998734 + AT_rich Low_complexity Low_complexity 1 21 0 202 258 30 30 chr3 138038807 138038873 -79998285 + MIR3 SINE MIR 115 180 -28 970 231 103 25 chr3 138039463 138039783 -79997375 + HAL1 LINE L1 1450 1794 -713 733 248 117 48 chr3 138039791 138040251 -79996907 + HAL1 LINE L1 1854 2345 -162 344 255 0 61 chr3 138040770 138040868 -79996290 + L2 LINE L2 3221 3312 -1 264 272 11 54 chr3 138040951 138041043 -79996115 - L2 LINE L2 -1 3312 3225 190 359 26 8 chr3 138041246 138041363 -79995795 + L2 LINE L2 1991 2109 -1205 1985 130 3 27 chr3 138042058 138042359 -79994799 - AluSg SINE Alu -16 294 1 2277 150 49 10 chr3 138042982 138043368 -79993790 + L1PA15 LINE L1 5765 6165 0 2083 194 42 18 chr3 138043372 138043821 -79993337 + L1MA9 LINE L1 5823 6282 -30 369 311 51 13 chr3 138043834 138044069 -79993089 + L1MDa LINE L1 1571 1814 -4726 22 70 0 0 chr3 138046271 138046314 -79990844 + AT_rich Low_complexity Low_complexity 1 43 0 6166 59 2 5 chr3 138046585 138047487 -79989671 - L1PA5 LINE L1 -145 6009 5110 487 200 0 33 chr3 138047499 138047679 -79989479 + C-rich Low_complexity Low_complexity 5 178 0 260 320 20 20 chr3 138047692 138047845 -79989313 + C-rich Low_complexity Low_complexity 1 153 0 238 121 17 17 chr3 138047860 138047918 -79989240 + C-rich Low_complexity Low_complexity 3 60 0 259 308 23 23 chr3 138048660 138048790 -79988368 - L3b LINE CR1 -143 1440 1311 234 105 0 0 chr3 138048811 138048849 -79988309 + (TCCCC)n Simple_repeat Simple_repeat 4 41 0 705 146 29 12 chr3 138048854 138049025 -79988133 + CT-rich Low_complexity Low_complexity 2 175 0 23 0 0 0 chr3 138049506 138049529 -79987629 + GC_rich Low_complexity Low_complexity 1 23 0 227 122 0 0 chr3 138049813 138049854 -79987304 + (GA)n Simple_repeat Simple_repeat 1 41 0 328 298 6 25 chr3 138050103 138050261 -79986897 + G-rich Low_complexity Low_complexity 3 157 0 180 0 0 0 chr3 138050589 138050609 -79986549 + (TTTC)n Simple_repeat Simple_repeat 1 20 0 2046 132 6 35 chr3 138050611 138050930 -79986228 - AluSx SINE Alu -2 310 1 186 36 0 36 chr3 138051695 138051723 -79985435 + L2 LINE L2 2593 2619 -695 2893 218 38 9 chr3 138051723 138052362 -79984796 - L1ME1 LINE L1 -27 6139 5483 822 164 0 8 chr3 138052370 138052504 -79984654 - FRAM SINE Alu -10 166 34 321 242 75 43 chr3 138152694 138152880 -79884278 - L1ME1 LINE L1 -2332 5476 5285 2349 310 135 46 chr3 138153050 138153999 -79883159 - L1ME1 LINE L1 -1063 5083 4220 2048 162 0 0 chr3 138153999 138154295 -79882863 - AluJb SINE Alu -11 301 6 2349 310 135 46 chr3 138154295 138155007 -79882151 - L1ME1 LINE L1 -1926 4220 3274 395 280 107 36 chr3 138155053 138155528 -79881630 - L1ME1 LINE L1 -2967 3179 2671 367 303 92 17 chr3 138155592 138155888 -79881270 - L1ME1 LINE L1 -3613 2533 2218 278 227 30 15 chr3 138155927 138155993 -79881165 + MIR SINE MIR 106 172 -90 385 286 65 45 chr3 138155999 138156198 -79880960 - MIR SINE MIR -44 218 16 372 317 178 0 chr3 138157683 138157885 -79879273 - MIR SINE MIR -18 244 7 208 203 119 17 chr3 138158790 138158849 -79878309 - MIR SINE MIR -61 147 108 21 0 0 0 chr3 138160388 138160409 -79876749 + AT_rich Low_complexity Low_complexity 1 21 0 204 239 0 0 chr3 138160952 138160998 -79876160 + MIR SINE MIR 84 129 -133 270 134 15 104 chr3 138161278 138161345 -79875813 + L2 LINE L2 3245 3305 -8 284 264 75 0 chr3 138161352 138161458 -79875700 + MER117 DNA MER1_type 2 115 -82 407 239 196 25 chr3 138161462 138161625 -79875533 - MIR SINE MIR -28 234 44 364 320 93 7 chr3 138162233 138162383 -79874775 + MIR SINE MIR 22 184 -78 913 186 17 69 chr3 138163589 138163618 -79873540 - MER20 DNA MER1_type 0 219 190 1797 173 0 0 chr3 138163618 138163940 -79873218 - AluSx SINE Alu 0 322 1 913 186 17 69 chr3 138163940 138164140 -79873018 - MER20 DNA MER1_type -29 190 1 681 283 86 16 chr3 138164362 138164606 -79872552 + MIR SINE MIR 2 262 0 271 196 11 109 chr3 138164714 138164806 -79872352 - MIR SINE MIR -117 145 63 336 355 74 44 chr3 138165449 138165906 -79871252 - L1ME4a LINE L1 -2 6119 5649 240 281 101 69 chr3 138166989 138167366 -79869792 + L2 LINE L2 2857 3245 -27 268 228 173 0 chr3 138168140 138168267 -79868891 - MIR SINE MIR -20 242 94 210 315 223 0 chr3 138169045 138169165 -79867993 + L2 LINE L2 3125 3268 -4 466 255 29 0 chr3 138169398 138169500 -79867658 + MER58B DNA MER1_type 237 341 0 493 306 127 13 chr3 138169670 138169899 -79867259 - MIR SINE MIR -2 260 6 188 378 101 0 chr3 138169929 138170048 -79867110 - L2 LINE L2 -6 3266 3136 576 291 30 10 chr3 138170120 138170319 -79866839 + MIR SINE MIR 27 229 -33 291 266 0 0 chr3 138171505 138171569 -79865589 + MIR SINE MIR 44 107 -155 262 314 219 0 chr3 138172884 138172989 -79864169 - MIR SINE MIR -74 188 61 257 304 96 13 chr3 138174648 138174784 -79862374 + MIR SINE MIR 37 181 -27 292 280 124 39 chr3 138175019 138175301 -79861857 - L1ME4a LINE L1 -193 5928 5623 250 309 130 0 chr3 138176742 138176865 -79860293 + L2 LINE L2 3129 3267 -5 303 305 108 24 chr3 138177355 138177522 -79859636 - MIR SINE MIR -60 202 22 283 355 98 0 chr3 138179648 138179831 -79857327 - L2 LINE L2 -35 3237 3037 323 309 3 58 chr3 138180089 138180675 -79856483 + C-rich Low_complexity Low_complexity 1 553 0 265 269 34 46 chr3 138180682 138180857 -79856301 + CT-rich Low_complexity Low_complexity 4 176 0 479 354 106 5 chr3 138181015 138181394 -79855764 + L1MC/D LINE L1 5405 5821 -1987 180 206 15 29 chr3 138181431 138181499 -79855659 + (TA)n Simple_repeat Simple_repeat 1 67 0 864 141 6 19 chr3 138181606 138181754 -79855404 - MER46A DNA MER2_type -2495 236 89 1528 130 4 0 chr3 138181754 138181985 -79855173 - AluSx SINE Alu -18 294 63 247 297 58 0 chr3 138182793 138182899 -79854259 + MIR SINE MIR 89 207 -55 191 326 122 14 chr3 138183405 138183552 -79853606 + MIR SINE MIR 24 186 -76 216 285 106 24 chr3 138183801 138183924 -79853234 + MIR SINE MIR 59 191 -71 912 286 158 31 chr3 138184444 138185336 -79851822 - L2 LINE L2 -23 3290 2268 393 318 93 49 chr3 138185801 138186251 -79850907 + L2 LINE L2 2841 3310 -3 427 307 139 30 chr3 138187060 138187327 -79849831 + L1ME LINE L1 5466 5761 -403 342 272 25 0 chr3 138188888 138188969 -79848189 + L2 LINE L2 2673 2755 -559 2156 125 53 42 chr3 138189008 138189368 -79847790 - THE1B LTR MaLR 0 364 1 44 88 0 0 chr3 138189641 138189755 -79847403 + AT_rich Low_complexity Low_complexity 1 114 0 368 206 14 0 chr3 138189818 138189891 -79847267 + L2 LINE L2 3198 3271 -1 292 306 70 70 chr3 138189842 138190241 -79846917 - L2 LINE L2 -39 3233 2835 * 370 352 34 11 chr3 138191266 138191445 -79845713 - MIR3 SINE MIR -23 185 3 286 224 118 0 chr3 138193797 138193873 -79843285 - MIR SINE MIR -79 129 45 186 333 164 31 chr3 138194352 138194511 -79842647 + MIR SINE MIR 46 225 -37 298 229 271 24 chr3 138195141 138195307 -79841851 - L2 LINE L2 -1 3312 3106 3160 203 112 9 chr3 138195499 138196291 -79840867 - Cheshire DNA MER1_type -1545 875 2 335 287 66 22 chr3 138196865 138197001 -79840157 + L1MDa LINE L1 2460 2601 -3939 433 284 54 31 chr3 138197312 138197534 -79839624 - L2 LINE L2 -7 3306 3080 468 91 0 0 chr3 138197540 138197606 -79839552 + (TG)n Simple_repeat Simple_repeat 2 67 0 788 233 115 43 chr3 138197666 138198083 -79839075 - MER113 DNA MER1_type? -74 447 1 188 268 42 0 chr3 138198375 138198446 -79838712 - L2 LINE L2 -290 2982 2909 198 354 0 0 chr3 138199129 138199194 -79837964 + MIR SINE MIR 197 261 -1 298 226 128 29 chr3 138200690 138200792 -79836366 - MIR SINE MIR -67 141 30 352 263 184 13 chr3 138202073 138202225 -79834933 - MIR SINE MIR -69 193 16 803 206 4 103 chr3 138202307 138202540 -79834618 - MER6B DNA MER2_type 0 210 1 385 250 10 29 chr3 138203019 138203123 -79834035 + MIR SINE MIR 20 121 -141 285 297 95 84 chr3 138204417 138204713 -79832445 - L2 LINE L2 -17 3255 2957 569 239 17 45 chr3 138204739 138204915 -79832243 + L1MA10 LINE L1 6164 6334 0 329 327 130 19 chr3 138204991 138205199 -79831959 - L2 LINE L2 0 3313 3083 352 287 75 63 chr3 138206212 138206386 -79830772 - L1MC/D LINE L1 -2059 5749 5574 352 308 167 13 chr3 138207123 138207279 -79829879 + MIR SINE MIR 46 225 -37 355 292 191 18 chr3 138208235 138208614 -79828544 - L2 LINE L2 -3 3269 2830 817 224 13 0 chr3 138208685 138208841 -79828317 - AluJb SINE Alu -19 293 136 198 313 31 0 chr3 138211243 138211307 -79825851 - MIR SINE MIR -110 152 87 828 153 0 7 chr3 138213312 138213449 -79823709 + AluJo SINE Alu 1 136 -176 188 274 233 0 chr3 138214143 138214216 -79822942 - MIR SINE MIR -117 145 56 183 42 0 0 chr3 138215826 138215850 -79821308 + (GGA)n Simple_repeat Simple_repeat 2 25 0 233 297 68 0 chr3 138215969 138216043 -79821115 - L2 LINE L2 -39 3233 3155 252 327 19 19 chr3 138216058 138216162 -79820996 - L2 LINE L2 -9 3304 3201 2278 177 16 0 chr3 138216172 138216556 -79820602 - MLT1B LTR MaLR 0 390 1 219 313 73 0 chr3 138216642 138216738 -79820420 - L2 LINE L2 -177 3095 2993 2019 133 0 16 chr3 138217446 138217762 -79819396 + AluSx SINE Alu 1 311 -1 242 191 132 15 chr3 138217982 138218050 -79819108 + MIR SINE MIR 118 193 -69 253 236 83 0 chr3 138218225 138218297 -79818861 - Charlie8 DNA MER1_type -2243 174 97 410 284 43 7 chr3 138219179 138219320 -79817838 - L1MC4 LINE L1 -201 7841 7696 629 233 112 0 chr3 138219386 138219592 -79817566 - L1MC4 LINE L1 -462 7580 7352 337 293 42 12 chr3 138220149 138220316 -79816842 - L2 LINE L2 -222 3050 2879 211 275 12 12 chr3 138220301 138220381 -79816777 - MIR SINE MIR 0 262 183 * 821 246 79 0 chr3 138220610 138220813 -79816345 - MER20 DNA MER1_type 0 219 1 207 238 16 131 chr3 138221913 138222035 -79815123 - MIR SINE MIR -8 254 147 378 292 8 23 chr3 138222379 138222509 -79814649 - MIR SINE MIR -115 147 20 853 277 12 16 chr3 138223979 138224235 -79812923 - MIR SINE MIR 0 262 8 181 339 83 33 chr3 138224337 138224458 -79812700 + MIR SINE MIR 89 215 -47 237 316 61 0 chr3 138224873 138224971 -79812187 + L2 LINE L2 2974 3077 -195 310 297 93 76 chr3 138226341 138226577 -79810581 - L1ME4a LINE L1 -3 6118 5879 500 324 53 22 chr3 138226607 138226832 -79810326 + MIR SINE MIR 10 241 -21 707 308 20 38 chr3 138226929 138227273 -79809885 - L1ME4a LINE L1 -399 5722 5385 278 233 0 27 chr3 138227720 138227793 -79809365 + L2 LINE L2 3155 3225 -47 257 292 115 39 chr3 138231310 138231440 -79805718 + MIR SINE MIR 49 188 -74 204 299 15 0 chr3 138231721 138231788 -79805370 + (TG)n Simple_repeat Simple_repeat 2 69 0 232 360 170 3 chr3 138232338 138232621 -79804537 + L2 LINE L2 2967 3296 -17 642 333 92 4 chr3 138232669 138232909 -79804249 - MIR SINE MIR 0 262 2 375 325 51 40 chr3 138233060 138233334 -79803824 - MER102b DNA MER1_type -9 332 56 196 289 144 0 chr3 138233411 138233501 -79803657 - L2 LINE L2 -217 3055 2953 300 352 53 4 chr3 138234029 138234251 -79802907 - MIR SINE MIR -14 248 20 288 243 35 72 chr3 138234552 138234812 -79802346 - Charlie8 DNA MER1_type -1008 1409 7 194 296 19 0 chr3 138234900 138234954 -79802204 - MIR SINE MIR -21 241 187 313 201 175 19 chr3 138235303 138235457 -79801701 - MER113 DNA MER1_type? -306 215 38 291 273 23 11 chr3 138235632 138235720 -79801438 + Charlie8 DNA MER1_type 104 192 -2225 2349 153 73 2 chr3 138235864 138236262 -79800896 - MSTB LTR MaLR 0 426 1 254 310 103 0 chr3 138238697 138238813 -79798345 - MIR3 SINE MIR -43 165 38 393 293 183 21 chr3 138240106 138240478 -79796680 + L2 LINE L2 2879 3310 -3 236 337 41 10 chr3 138241025 138241123 -79796035 + L2 LINE L2 3146 3246 -26 273 295 26 0 chr3 138241550 138241628 -79795530 + MIR SINE MIR 27 106 -156 219 226 19 0 chr3 138243144 138243197 -79793961 - L2 LINE L2 -18 3254 3201 215 132 26 0 chr3 138245449 138245487 -79791671 + (TG)n Simple_repeat Simple_repeat 2 40 0 340 274 44 9 chr3 138245630 138245743 -79791415 + MIR SINE MIR 58 174 -88 200 328 101 8 chr3 138245748 138245867 -79791291 - L2 LINE L2 -11 3261 3132 323 224 24 0 chr3 138245937 138246022 -79791136 + MIR SINE MIR 50 136 -126 184 321 37 12 chr3 138246608 138246689 -79790469 + MIR SINE MIR 34 116 -146 279 0 0 0 chr3 138248373 138248404 -79788754 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 229 274 137 16 chr3 138250706 138250830 -79786328 - L2 LINE L2 -111 3161 3023 476 204 78 4 chr3 138251775 138251908 -79785250 + MIR SINE MIR 8 151 -57 856 319 65 16 chr3 138252136 138252518 -79784640 - L2 LINE L2 -6 3307 2907 214 259 53 30 chr3 138252533 138252664 -79784494 - L2 LINE L2 -350 2964 2831 216 0 0 0 chr3 138253087 138253111 -79784047 + (TCC)n Simple_repeat Simple_repeat 1 24 0 192 301 26 62 chr3 138253191 138253304 -79783854 + L2 LINE L2 3162 3270 -43 2273 81 0 0 chr3 138254315 138254600 -79782558 - AluY SINE Alu -13 298 14 311 309 43 0 chr3 138254756 138254850 -79782308 + MIR SINE MIR 53 150 -58 1675 154 25 31 chr3 138255555 138255912 -79781246 + L1MA7 LINE L1 5890 6244 -47 1183 166 0 10 chr3 138255912 138256111 -79781047 + AluJb SINE Alu 87 283 -29 386 314 57 8 chr3 138256111 138256235 -79780923 - L1MCa LINE L1 -4358 2068 1939 226 255 132 69 chr3 138256235 138256439 -79780719 - L2 LINE L2 -221 3051 2835 246 305 32 0 chr3 138256932 138257027 -79780131 - LTR33 LTR ERVL -417 104 7 216 0 0 0 chr3 138258649 138258673 -79778485 + (TG)n Simple_repeat Simple_repeat 2 25 0 56 61 0 0 chr3 138259031 138259129 -79778029 + GC_rich Low_complexity Low_complexity 1 98 0 338 195 13 26 chr3 138259229 138259306 -79777852 + MLT1F1 LTR MaLR 491 566 -1 323 309 101 78 chr3 138259495 138259980 -79777178 - L2 LINE L2 -2402 912 417 370 307 6 28 chr3 138260004 138260047 -79777111 + (CACCAT)n Simple_repeat Simple_repeat 3 45 -132 2800 141 21 2 chr3 138260047 138260467 -79776691 - MSTA LTR MaLR 0 428 1 370 307 6 28 chr3 138260467 138260602 -79776556 + (CACCAT)n Simple_repeat Simple_repeat 45 177 0 436 326 0 0 chr3 138260812 138260987 -79776171 + C-rich Low_complexity Low_complexity 1 175 0 311 273 40 10 chr3 138261102 138261201 -79775957 + L1ME LINE L1 5140 5241 -905 365 271 46 92 chr3 138261208 138261632 -79775526 + L1ME LINE L1 5256 5669 -452 2420 72 0 3 chr3 138261654 138261960 -79775198 - AluY SINE Alu -6 305 1 499 104 21 62 chr3 138262120 138262216 -79774942 + L1MC1 LINE L1 6238 6329 -4 201 176 0 0 chr3 138262645 138262679 -79774479 + (CAT)n Simple_repeat Simple_repeat 3 36 0 381 267 118 43 chr3 138262680 138262841 -79774317 + MIR SINE MIR 18 190 -72 585 256 18 152 chr3 138262852 138263070 -79774088 + L2 LINE L2 2876 3007 -306 2198 66 30 13 chr3 138263070 138263373 -79773785 - AluY SINE Alu 0 311 4 585 256 18 152 chr3 138263373 138263595 -79773563 + L2 LINE L2 3007 3257 -56 239 239 0 0 chr3 138263807 138263878 -79773280 + L1MB8 LINE L1 6108 6178 0 * 363 343 86 38 chr3 138263875 138264539 -79772619 + L1MC4a LINE L1 5420 6115 -1693 344 71 18 0 chr3 138264552 138264608 -79772550 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 390 364 32 5 chr3 138264751 138264968 -79772190 + L1ME LINE L1 5495 5717 -453 825 140 6 22 chr3 138264981 138265191 -79771967 + AluJo SINE Alu 85 309 -3 493 358 53 28 chr3 138265390 138265711 -79771447 + L1 LINE L1 4422 4750 -1396 477 302 155 53 chr3 138265823 138266239 -79770919 - HAL1 LINE L1 -1282 3346 851 634 241 59 18 chr3 138266260 138266480 -79770678 - MLT1J LTR MaLR -280 231 3 237 320 8 24 chr3 138266578 138266703 -79770455 + (TGG)n Simple_repeat Simple_repeat 1 123 0 274 316 17 0 chr3 138266753 138266870 -79770288 + (TGG)n Simple_repeat Simple_repeat 1 119 0 * 307 313 6 36 chr3 138266814 138266980 -79770178 + (ATGGTG)n Simple_repeat Simple_repeat 4 164 0 1285 96 0 6 chr3 138267057 138267234 -79769924 - AluSg SINE Alu -134 176 1 326 316 23 17 chr3 138269861 138270038 -79767120 + (CCA)n Simple_repeat Simple_repeat 2 179 0 195 220 0 0 chr3 138270098 138270148 -79767010 + (CCA)n Simple_repeat Simple_repeat 2 51 0 837 216 106 35 chr3 138271022 138271277 -79765881 + MLT1E2 LTR MaLR 353 625 -1 948 173 79 24 chr3 138271496 138271992 -79765166 + L1MB7 LINE L1 5594 6173 -11 259 281 74 52 chr3 138275334 138275469 -79761689 - L2 LINE L2 -93 3220 3083 316 287 75 63 chr3 138276473 138276647 -79760511 - L1MC/D LINE L1 -2059 5749 5574 2117 91 3 3 chr3 138278110 138278395 -79758763 - AluY SINE Alu -13 298 14 329 319 29 29 chr3 138278504 138278642 -79758516 + MIR3 SINE MIR 13 150 -58 225 113 113 25 chr3 138279333 138279413 -79757745 + L1MA9 LINE L1 5890 5976 -336 389 367 64 42 chr3 138279566 138279997 -79757161 + HAL1 LINE L1 875 1313 -1194 2211 176 16 8 chr3 138280039 138280426 -79756732 + MLT1B LTR MaLR 1 390 0 269 327 19 19 chr3 138280436 138280540 -79756618 + L2 LINE L2 3201 3304 -9 241 297 68 0 chr3 138280555 138280629 -79756529 + L2 LINE L2 3155 3233 -39 183 42 0 0 chr3 138280747 138280771 -79756387 + (TCC)n Simple_repeat Simple_repeat 2 25 0 238 333 114 37 chr3 138281274 138281503 -79755655 + MIR SINE MIR 18 262 0 322 250 19 39 chr3 138281577 138281681 -79755477 + MIR3 SINE MIR 4 105 -103 1060 289 113 9 chr3 138281867 138282317 -79754841 + MLT1J LTR MaLR 1 497 -14 817 316 63 8 chr3 138282330 138282713 -79754445 + MLT1L LTR MaLR 195 598 -17 214 200 0 0 chr3 138282955 138282995 -79754163 + MIR SINE MIR 106 145 -63 278 239 26 68 chr3 138283206 138283323 -79753835 + MLT1K LTR MaLR 161 272 -316 452 213 14 21 chr3 138283477 138283765 -79753393 + C-rich Low_complexity Low_complexity 1 285 0 3701 100 20 27 chr3 138284147 138284707 -79752451 + L1PB1 LINE L1 5596 6151 0 200 122 24 0 chr3 138284751 138284792 -79752366 + A-rich Low_complexity Low_complexity 2 43 0 243 195 0 0 chr3 138285149 138285190 -79751968 - MIR SINE MIR -110 152 112 253 289 102 16 chr3 138286513 138286641 -79750517 + L2 LINE L2 2911 3049 -223 248 152 65 0 chr3 138286975 138287021 -79750137 - MIR SINE MIR -120 142 94 306 256 178 44 chr3 138287907 138288026 -79749132 + L2 LINE L2 2673 2825 -489 2064 129 50 47 chr3 138288026 138288389 -79748769 - THE1B LTR MaLR 0 364 1 306 256 178 44 chr3 138288389 138288449 -79748709 + L2 LINE L2 2825 2876 -438 274 202 35 35 chr3 138288449 138288563 -79748595 + (CCCA)n Simple_repeat Simple_repeat 1 114 0 272 154 60 51 chr3 138288701 138288818 -79748340 + (CACAC)n Simple_repeat Simple_repeat 2 119 0 398 344 73 21 chr3 138289029 138289262 -79747896 + L1M4c LINE L1 959 3516 -2866 473 302 136 37 chr3 138289336 138289872 -79747286 + L2 LINE L2 2680 3272 0 338 279 10 10 chr3 138289928 138290032 -79747126 + MIR SINE MIR 89 192 -70 329 286 68 30 chr3 138290498 138290631 -79746527 - L1ME4a LINE L1 -4 6117 5980 474 240 0 18 chr3 138290989 138291264 -79745894 + C-rich Low_complexity Low_complexity 1 270 0 328 299 0 0 chr3 138291323 138291430 -79745728 + C-rich Low_complexity Low_complexity 1 107 0 241 133 0 50 chr3 138292422 138292482 -79744676 + (CCCCG)n Simple_repeat Simple_repeat 4 60 0 435 224 121 0 chr3 138292588 138292704 -79744454 + L2 LINE L2 3181 3310 -3 246 32 0 0 chr3 138292706 138292737 -79744421 + (TGGA)n Simple_repeat Simple_repeat 1 31 0 342 325 273 3 chr3 138292811 138293250 -79743908 + L2 LINE L2 2750 3313 0 1280 215 16 42 chr3 138295417 138295794 -79741364 - L1MC4 LINE L1 -57 7985 7619 542 268 42 0 chr3 138295870 138296060 -79741098 - L1ME4a LINE L1 -243 5927 5730 270 333 9 0 chr3 138296160 138296274 -79740884 - L1ME4a LINE L1 -577 5585 5471 338 304 0 0 chr3 138296780 138296872 -79740286 - L2 LINE L2 -4 3309 3218 749 264 156 16 chr3 138296973 138297352 -79739806 + LTR33A LTR ERVL 82 513 -10 792 224 13 0 chr3 138299501 138299657 -79737501 + AluJb SINE Alu 136 293 -19 383 298 72 72 chr3 138299709 138300055 -79737103 + L1M2 LINE L1 1662 2007 -4842 667 237 34 0 chr3 138302190 138302367 -79734791 - MER105 DNA DNA -7 197 15 1639 209 96 4 chr3 138303262 138303740 -79733418 + MER74A LTR ERVL 7 528 -30 289 351 0 31 chr3 138304145 138304366 -79732792 + C-rich Low_complexity Low_complexity 1 214 0 869 278 8 4 chr3 138304526 138304767 -79732391 - MLT1E LTR MaLR -16 577 336 454 344 35 4 chr3 138305113 138305369 -79731789 - L1ME3A LINE L1 -218 5952 5689 529 248 14 7 chr3 138305421 138305562 -79731596 - L1ME3A LINE L1 -586 5576 5435 194 151 19 75 chr3 138305763 138305816 -79731342 + L2 LINE L2 2915 2964 -308 892 144 164 41 chr3 138305978 138306173 -79730985 - MER20 DNA MER1_type 0 219 1 2402 223 11 16 chr3 138306613 138306800 -79730358 - L1P LINE L1 -801 5373 5186 2080 94 7 10 chr3 138306800 138307097 -79730061 - AluY SINE Alu -15 296 1 2402 223 11 16 chr3 138307097 138307588 -79729570 - L1P LINE L1 -988 5186 4695 332 233 181 48 chr3 138307744 138308015 -79729143 - LTR33 LTR ERVL -114 407 101 302 178 27 70 chr3 138311082 138311267 -79725891 + (CCCA)n Simple_repeat Simple_repeat 1 177 0 340 315 3 39 chr3 138311389 138311659 -79725499 + G-rich Low_complexity Low_complexity 1 260 0 286 219 0 27 chr3 138313581 138313654 -79723504 - L2 LINE L2 -47 3225 3155 744 311 20 38 chr3 138314101 138314445 -79722713 + L1ME1 LINE L1 5385 5722 -399 500 324 53 22 chr3 138314542 138314767 -79722391 - MIR SINE MIR -21 241 10 3139 262 80 8 chr3 138315207 138315859 -79721299 - L1M4 LINE L1 -1897 4249 3645 240 35 0 0 chr3 138315859 138315888 -79721270 + (ATG)n Simple_repeat Simple_repeat 3 31 0 1681 139 40 7 chr3 138315891 138316165 -79720993 - AluJb SINE Alu -29 283 1 3139 262 80 8 chr3 138316165 138316624 -79720534 - L1M4 LINE L1 -2502 3644 3054 2454 212 32 31 chr3 138316622 138317361 -79719797 + L1ME1 LINE L1 5203 5944 -222 * 320 65 65 0 chr3 138317397 138317443 -79719715 + L1MB7 LINE L1 6136 6184 0 33 0 0 0 chr3 138317484 138317517 -79719641 + AT_rich Low_complexity Low_complexity 1 33 0 2080 171 113 32 chr3 138317643 138318110 -79719048 + MLT1D LTR MaLR 1 505 0 673 182 95 0 chr3 138318110 138318258 -79718900 + L1ME1 LINE L1 5806 5967 -199 734 224 145 14 chr3 138318822 138319036 -79718122 - MIR SINE MIR -6 256 15 401 347 8 0 chr3 138319164 138319288 -79717870 + MIR3 SINE MIR 8 132 -76 754 231 55 21 chr3 138319291 138319529 -79717629 + MLT2C1 LTR ERVL 2 247 -150 831 249 83 66 chr3 138319859 138320245 -79716913 + MLT1J LTR MaLR 6 446 -65 348 304 27 27 chr3 138320284 138320432 -79716726 - MIR SINE MIR -108 154 7 639 235 115 32 chr3 138320567 138320996 -79716162 - MLT1G LTR MaLR 0 590 73 727 243 217 23 chr3 138321061 138321498 -79715660 - MLT1K LTR MaLR -9 579 58 544 273 250 6 chr3 138321871 138322093 -79715065 - L2 LINE L2 -274 2998 2831 1770 170 10 7 chr3 138322093 138322393 -79714765 - AluJb SINE Alu -11 301 1 544 273 250 6 chr3 138322393 138322548 -79714610 - L2 LINE L2 -441 2831 2538 190 138 0 0 chr3 138323685 138323714 -79713444 + L2 LINE L2 3229 3257 -15 286 179 0 0 chr3 138323718 138323774 -79713384 + L1MB7 LINE L1 5559 5614 -570 441 152 33 11 chr3 138323775 138323867 -79713291 + L1MB7 LINE L1 5722 5815 -369 825 207 6 30 chr3 138323871 138324065 -79713093 + AluJo SINE Alu 118 307 0 1801 204 37 0 chr3 138324066 138324419 -79712739 + L1MB7 LINE L1 5818 6183 -1 246 206 14 27 chr3 138324576 138324649 -79712509 + (CA)n Simple_repeat Simple_repeat 2 73 0 240 35 0 0 chr3 138324936 138324965 -79712193 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1533 177 4 14 chr3 138324970 138325247 -79711911 - AluJo SINE Alu -38 274 1 1089 319 89 1 chr3 138325611 138326161 -79710997 - L1ME1 LINE L1 -21 6145 5540 782 217 6 6 chr3 138326766 138326946 -79710212 + MER3 DNA MER1_type 30 209 0 180 274 29 108 chr3 138327112 138327214 -79709944 + MIR3 SINE MIR 109 202 -6 214 241 0 17 chr3 138327346 138327404 -79709754 + G-rich Low_complexity Low_complexity 5 61 0 440 322 176 25 chr3 138329933 138330415 -79706743 + L2 LINE L2 2422 2976 -338 249 381 48 0 chr3 138330550 138330655 -79706503 + L2 LINE L2 3180 3289 -24 356 326 11 22 chr3 138330684 138330882 -79706276 + (TGG)n Simple_repeat Simple_repeat 1 195 0 322 242 23 55 chr3 138332974 138333102 -79704056 + (CACCAT)n Simple_repeat Simple_repeat 2 125 0 194 279 131 16 chr3 138333520 138333642 -79703516 - L2 LINE L2 -1055 2259 2124 1749 139 47 36 chr3 138334670 138334971 -79702187 + AluJo SINE Alu 4 307 -5 203 324 118 0 chr3 138335108 138335210 -79701948 - L2 LINE L2 -4 3309 3196 423 233 43 9 chr3 138335857 138335973 -79701185 + L2 LINE L2 3172 3291 -22 993 268 124 36 chr3 138338236 138338770 -79698388 + L2 LINE L2 2739 3313 0 520 204 26 80 chr3 138338772 138338948 -79698210 - MIR SINE MIR -59 149 32 703 276 37 33 chr3 138338949 138339059 -79698099 + Charlie8 DNA MER1_type 4 112 -229 1694 171 19 32 chr3 138339059 138339368 -79697790 + AluJo SINE Alu 1 305 -7 703 276 37 33 chr3 138339368 138339529 -79697629 + Charlie8 DNA MER1_type 112 276 -65 390 314 184 27 chr3 138339578 138339877 -79697281 + L2 LINE L2 2927 3272 0 341 286 47 19 chr3 138340243 138340398 -79696760 + MIR SINE MIR 20 181 -63 285 268 14 51 chr3 138340779 138340917 -79696241 + C-rich Low_complexity Low_complexity 2 134 0 252 286 83 52 chr3 138341504 138341621 -79695537 + L1M4 LINE L1 4595 4707 -1439 315 0 0 0 chr3 138341621 138341656 -79695502 + (TG)n Simple_repeat Simple_repeat 1 35 0 216 0 0 0 chr3 138341655 138341679 -79695479 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 252 286 83 52 chr3 138341656 138341886 -79695272 + L1M4 LINE L1 4707 4929 -1217 250 319 132 0 chr3 138342726 138342870 -79694288 + MIR SINE MIR 30 192 -70 255 31 0 0 chr3 138343549 138343581 -79693577 + (CA)n Simple_repeat Simple_repeat 2 33 0 273 316 0 0 chr3 138343966 138344045 -79693113 + G-rich Low_complexity Low_complexity 1 79 0 642 333 92 4 chr3 138344062 138344302 -79692856 - MIR SINE MIR 0 262 2 390 322 55 40 chr3 138344452 138344725 -79692433 - MER102b DNA MER1_type -9 332 56 196 289 144 0 chr3 138344802 138344892 -79692266 - L2 LINE L2 -217 3055 2953 300 352 53 4 chr3 138345419 138345641 -79691517 - MIR SINE MIR -14 248 20 271 274 36 8 chr3 138346007 138346205 -79690953 - Charlie8 DNA MER1_type -2153 264 7 194 296 19 0 chr3 138346293 138346347 -79690811 - MIR SINE MIR -21 241 187 307 240 156 0 chr3 138346696 138346850 -79690308 - MER113 DNA MER1_type? -306 215 38 232 259 35 35 chr3 138347030 138347115 -79690043 + Charlie8 DNA MER1_type 108 192 -2225 1772 219 81 0 chr3 138347256 138347649 -79689509 - MSTB LTR MaLR 0 426 2 207 311 6 31 chr3 138347658 138347819 -79689339 + CT-rich Low_complexity Low_complexity 1 157 0 410 284 43 7 chr3 138348427 138348568 -79688590 - L1MC4 LINE L1 -201 7841 7696 629 233 112 0 chr3 138348634 138348840 -79688318 - L1MC4 LINE L1 -462 7580 7352 337 293 42 12 chr3 138349399 138349566 -79687592 - L2 LINE L2 -222 3050 2879 211 275 12 12 chr3 138349551 138349631 -79687527 - MIR SINE MIR 0 262 183 * 821 246 79 0 chr3 138349860 138350063 -79687095 - MER20 DNA MER1_type 0 219 1 207 238 16 131 chr3 138351156 138351278 -79685880 - MIR SINE MIR -8 254 147 22 0 0 0 chr3 138353120 138353142 -79684016 + AT_rich Low_complexity Low_complexity 1 22 0 203 236 14 0 chr3 138353831 138353903 -79683255 + (CA)n Simple_repeat Simple_repeat 2 74 0 202 136 68 0 chr3 138355490 138355549 -79681609 + (TG)n Simple_repeat Simple_repeat 1 63 0 * 375 134 64 41 chr3 138355512 138355684 -79681474 + (TTGTG)n Simple_repeat Simple_repeat 3 178 0 254 278 28 0 chr3 138357336 138357408 -79679750 - MIR SINE MIR -162 100 27 235 342 36 18 chr3 138357838 138357949 -79679209 - L2 LINE L2 -26 3246 3134 280 281 211 24 chr3 138358480 138358726 -79678432 - L2 LINE L2 -3 3310 3019 304 347 46 10 chr3 138359098 138359294 -79677864 + L1MB8 LINE L1 5419 5621 -543 446 318 118 39 chr3 138359310 138359565 -79677593 + L1MB8 LINE L1 5665 5939 -239 508 299 0 6 chr3 138360091 138360268 -79676890 + GA-rich Low_complexity Low_complexity 2 177 0 257 281 16 0 chr3 138363669 138363733 -79673425 - MIR SINE MIR -113 149 85 249 312 70 51 chr3 138363795 138364010 -79673148 + L2 LINE L2 2922 3140 -132 210 315 265 7 chr3 138364292 138364594 -79672564 + L2 LINE L2 2594 2973 -341 372 266 93 8 chr3 138365102 138365290 -79671868 - MIR SINE MIR -37 225 25 466 174 0 27 chr3 138366365 138366549 -79670609 + G-rich Low_complexity Low_complexity 1 179 0 205 337 168 26 chr3 138366694 138366884 -79670274 - MIR SINE MIR 0 262 46 349 304 72 87 chr3 138366928 138367315 -79669843 + L1M2 LINE L1 1666 2014 -4835 2082 154 43 0 chr3 138568015 138568386 -79468772 + L1MB3 LINE L1 5795 6181 -2 239 292 129 74 chr3 138569255 138569659 -79467499 - L2 LINE L2 -1533 1781 1356 697 242 127 31 chr3 138570069 138570329 -79466829 - MER57A LTR ERV1 -4 399 115 288 224 26 13 chr3 138570331 138570407 -79466751 + Tigger2 DNA MER2_type 1 77 -2641 979 214 0 6 chr3 138570435 138570613 -79466545 - MER8 DNA MER2_type -62 177 1 461 172 65 0 chr3 138570632 138570725 -79466433 - LTR54 LTR ERV1 -411 99 1 1953 246 37 8 chr3 138570728 138571219 -79465939 - MER110-int LTR ERV1 -396 7141 6637 1867 250 31 86 chr3 138571463 138572858 -79464300 - MER110-int LTR ERV1 -1332 6205 2090 336 359 0 0 chr3 138572952 138573044 -79464114 - MER110-int LTR ERV1 -2924 3877 3786 544 341 60 50 chr3 138573610 138574469 -79462689 - MER110-int LTR ERV1 -3803 844 147 3102 112 12 0 chr3 138574951 138575380 -79461778 - MER57B LTR ERV1 0 434 1 553 29 0 0 chr3 138575381 138575449 -79461709 - MER57B-int LTR ERV1 -2 7535 7468 619 176 23 15 chr3 138575492 138575623 -79461535 - LTR54B LTR ERV1 -362 136 5 1105 105 6 0 chr3 138575623 138575785 -79461373 - MER57B-int LTR ERV1 -384 7153 6991 5704 119 31 16 chr3 138575785 138577081 -79460077 - MER57B-int LTR ERV1 -2015 5522 1848 4435 144 32 32 chr3 138577074 138577638 -79459520 - MER57B-int LTR ERV1 -3416 3834 3271 * 5720 36 0 0 chr3 138577638 138578303 -79458855 + L1PA5 LINE L1 5490 6154 0 4435 144 32 32 chr3 138578303 138579981 -79457177 - MER57B-int LTR ERV1 -3979 3271 3 3273 94 2 2 chr3 138579981 138580415 -79456743 - MER57B LTR ERV1 0 434 1 1848 171 0 13 chr3 138581815 138582120 -79455038 + AluSq SINE Alu 1 301 -12 666 225 75 15 chr3 138582360 138582560 -79454598 - MER57A-int LTR ERV1 -7290 247 36 510 272 120 5 chr3 138582600 138582791 -79454367 - MER57A LTR ERV1 -4 399 187 390 202 131 0 chr3 138582889 138582988 -79454170 - LTR54 LTR ERV1 -396 114 3 1524 259 88 8 chr3 138583171 138583662 -79453496 + L1ME2 LINE L1 5595 6124 -40 1067 164 70 45 chr3 138583871 138584072 -79453086 + AluJo SINE Alu 17 222 -90 530 272 69 17 chr3 138584182 138584355 -79452803 + HAL1 LINE L1 1030 1211 -1296 204 40 0 0 chr3 138584977 138585002 -79452156 + (A)n Simple_repeat Simple_repeat 1 25 0 310 318 49 49 chr3 138585256 138585580 -79451578 + HAL1 LINE L1 2014 2337 -170 1932 122 177 14 chr3 138586332 138586700 -79450458 - MSTA LTR MaLR 0 428 1 233 278 259 9 chr3 138586853 138586961 -79450197 - L2 LINE L2 -9 3263 3129 674 295 150 18 chr3 138586965 138587365 -79449793 - L2 LINE L2 0 3313 2861 268 258 53 0 chr3 138588717 138588849 -79448309 - L1 LINE L1 -1723 4423 4285 2067 62 27 12 chr3 138589033 138589326 -79447832 + AluY SINE Alu 23 319 0 227 191 24 0 chr3 138589487 138589529 -79447629 + LTR16A1 LTR ERVL 413 455 -2 407 325 81 0 chr3 138590853 138591013 -79446145 - MIR SINE MIR -41 221 49 337 250 0 0 chr3 138591102 138591190 -79445968 - L1MA9 LINE L1 -38 6274 6187 255 311 121 32 chr3 138591790 138592128 -79445030 + L2 LINE L2 2886 3253 -19 27 0 0 0 chr3 138592477 138592504 -79444654 + AT_rich Low_complexity Low_complexity 1 27 0 2238 89 4 4 chr3 138592540 138592864 -79444294 - AluSx SINE Alu 0 324 1 1996 143 0 32 chr3 138592864 138593172 -79443986 - AluSx SINE Alu -14 298 1 22 0 0 0 chr3 138593175 138593197 -79443961 + AT_rich Low_complexity Low_complexity 1 22 0 736 152 76 25 chr3 138593213 138593391 -79443767 - AluJb SINE Alu 0 312 135 187 338 0 14 chr3 138593840 138593911 -79443247 - MIR SINE MIR -165 97 28 1377 146 23 5 chr3 138594023 138594243 -79442915 + AluJb SINE Alu 73 296 -16 617 159 14 154 chr3 138594245 138594359 -79442799 - Charlie5 DNA MER1_type -75 2549 2477 1909 151 13 13 chr3 138594359 138594671 -79442487 + AluJo SINE Alu 1 312 0 617 159 14 154 chr3 138594671 138594770 -79442388 - Charlie5 DNA MER1_type -147 2477 2366 1879 194 55 0 chr3 138595251 138595617 -79441541 + MLT1B LTR MaLR 1 386 -4 982 284 114 31 chr3 138595998 138596551 -79440607 + L2 LINE L2 1995 2593 -721 182 275 42 92 chr3 138596535 138596655 -79440503 - MER5A DNA MER1_type -42 147 34 * 5287 170 39 0 chr3 138596693 138597766 -79439392 + L1MC1 LINE L1 5216 6329 -4 201 121 0 0 chr3 138597767 138597800 -79439358 + (TAA)n Simple_repeat Simple_repeat 1 33 0 1211 182 27 81 chr3 138597896 138598332 -79438826 + MLT1C LTR MaLR 1 390 0 1852 243 71 0 chr3 138598531 138598996 -79438162 + L1M4b LINE L1 -573 4294967220 -6360 686 276 40 48 chr3 138599030 138599425 -79437733 + L1M4b LINE L1 1584 2126 -4437 833 264 74 50 chr3 138599439 138600222 -79436936 + L1MEc LINE L1 1731 2490 -3725 2454 93 0 0 chr3 138600249 138600549 -79436609 - AluSx SINE Alu -12 300 1 416 272 124 96 chr3 138600563 138600985 -79436173 + L1MEc LINE L1 3081 3512 -2703 342 0 0 0 chr3 138601102 138601140 -79436018 + (CA)n Simple_repeat Simple_repeat 2 39 0 220 271 28 17 chr3 138601759 138601887 -79435271 + MIR SINE MIR 162 262 0 182 237 0 0 chr3 138602015 138602053 -79435105 - MIR SINE MIR -111 151 114 1233 261 55 16 chr3 138603712 138604145 -79433013 + MLT1C LTR MaLR 3 452 -15 395 242 133 0 chr3 138605373 138605501 -79431657 - MIR SINE MIR -86 176 32 195 69 0 0 chr3 138605920 138605949 -79431209 + (CAGCC)n Simple_repeat Simple_repeat 3 31 0 331 219 0 5 chr3 138605990 138606124 -79431034 - MER20 DNA MER1_type 0 219 29 236 258 56 34 chr3 138607001 138607090 -79430068 + MIR SINE MIR 157 247 -15 1004 242 27 0 chr3 138608034 138608290 -79428868 + MLT1E2 LTR MaLR 348 610 -16 269 312 55 0 chr3 138609700 138609809 -79427349 + MLT2E LTR ERVL 496 610 -18 25 0 0 0 chr3 138610760 138610785 -79426373 + AT_rich Low_complexity Low_complexity 1 25 0 247 292 28 21 chr3 138611773 138611917 -79425241 + LTR33 LTR ERVL 364 508 -13 258 304 22 0 chr3 138612740 138612832 -79424326 + MIR SINE MIR 21 114 -148 596 286 68 15 chr3 138613811 138614017 -79423141 + MIR SINE MIR 20 236 -26 1672 206 51 21 chr3 138614020 138614515 -79422643 + L1ME LINE L1 5170 5676 -490 5597 245 100 31 chr3 138614517 138618526 -79418632 + L1M4c LINE L1 33 4353 -2029 392 177 8 177 chr3 138618532 138618631 -79418527 - Tigger7 DNA MER2_type -1 2486 2410 2219 152 14 0 chr3 138618631 138618987 -79418171 - MER47A DNA MER2_type -4 362 2 392 177 8 177 chr3 138618987 138619011 -79418147 - Tigger7 DNA MER2_type -77 2410 2384 * 1421 191 31 8 chr3 138619004 138619261 -79417897 - Tigger7 DNA MER2_type -470 263 1 5506 183 35 17 chr3 138619261 138619383 -79417775 + L1M2 LINE L1 4357 4475 -1996 1427 200 60 7 chr3 138619383 138619668 -79417490 + AluJo SINE Alu 1 300 -12 5506 183 35 17 chr3 138619668 138620889 -79416269 + L1M2 LINE L1 4475 5728 -743 204 322 68 0 chr3 138621535 138621653 -79415505 + MIR3 SINE MIR 82 207 -1 369 235 132 47 chr3 138622470 138622679 -79414479 + MLT1G1 LTR MaLR 339 565 -30 2003 174 11 6 chr3 138622679 138623029 -79414129 + MLT2D LTR ERVL 1 352 -62 207 156 0 0 chr3 138623057 138623089 -79414069 + (CA)n Simple_repeat Simple_repeat 2 33 0 257 57 38 94 chr3 138623093 138623146 -79414012 + MLT2D LTR ERVL 358 407 -7 921 193 45 8 chr3 138623947 138624256 -79412902 + MLT1A1 LTR MaLR 1 365 0 1187 144 21 64 chr3 138625032 138625268 -79411890 - MER57-int LTR ERV1 -32 7505 7280 794 83 16 33 chr3 138625268 138625389 -79411769 - LTR54B LTR ERV1 -366 132 14 12619 131 11 9 chr3 138625397 138627301 -79409857 - MER57-int LTR ERV1 -389 7148 5242 378 233 11 41 chr3 138627306 138627506 -79409652 - MER34C LTR ERV1 -195 390 155 267 252 47 47 chr3 138627577 138627684 -79409474 - MER57A-int LTR ERV1 -4123 3414 3308 4883 173 8 16 chr3 138627733 138628571 -79408587 - MER57A-int LTR ERV1 -6705 832 1 2432 168 23 0 chr3 138628571 138628965 -79408193 - MER57A LTR ERV1 0 403 1 851 281 80 63 chr3 138629186 138629723 -79407435 + L1MC4 LINE L1 7496 8041 -1 3979 163 51 21 chr3 138629768 138630515 -79406643 - MER4E LTR ERV1 -10 769 1 22 0 0 0 chr3 138631158 138631180 -79405978 + AT_rich Low_complexity Low_complexity 1 22 0 328 276 40 49 chr3 138631362 138631628 -79405530 - L1MC4a LINE L1 -379 5805 5694 295 282 16 8 chr3 138631795 138631919 -79405239 - L1P LINE L1 -722 5429 5305 1101 201 79 21 chr3 138632065 138632344 -79404814 + LTR1B LTR ERV1 1 295 -531 1309 176 12 49 chr3 138632344 138632673 -79404485 - HERVH LTR ERV1 -6450 1263 947 402 229 9 76 chr3 138632829 138632934 -79404224 + LTR19B-int LTR ERV1 5157 5254 -332 * 1468 126 23 0 chr3 138632929 138633144 -79404014 + LTR19B-int LTR ERV1 7499 7718 -1 4125 108 17 22 chr3 138633145 138633453 -79403705 + LTR19B LTR ERV1 1 306 -274 2307 84 0 3 chr3 138633453 138633749 -79403409 + AluSc SINE Alu 1 295 -14 4125 108 17 22 chr3 138633749 138634023 -79403135 + LTR19B LTR ERV1 306 580 0 10642 220 72 18 chr3 138634024 138636482 -79400676 + L1MC1 LINE L1 349 2675 -4076 2122 81 32 11 chr3 138636482 138636767 -79400391 - AluSp SINE Alu -22 291 1 10642 220 72 18 chr3 138636767 138639995 -79397163 + L1MC1 LINE L1 2675 6414 -337 24 0 0 0 chr3 138640306 138640330 -79396828 + GC_rich Low_complexity Low_complexity 1 24 0 352 262 106 28 chr3 138640819 138640960 -79396198 - L1ME LINE L1 -395 5775 5624 1714 257 141 23 chr3 138641691 138642469 -79394689 + L1ME3 LINE L1 5261 6130 -32 456 285 110 19 chr3 138642586 138642895 -79394263 + MLT1I LTR MaLR 69 405 -4 185 349 48 0 chr3 138643366 138643449 -79393709 + MIR SINE MIR 19 105 -157 293 242 124 7 chr3 138644879 138645032 -79392126 + HAL1b LINE L1 62 232 -1116 346 267 73 44 chr3 138645737 138645988 -79391170 + L1ME LINE L1 5183 5449 -672 833 214 37 34 chr3 138646103 138646258 -79390900 + L1M4c LINE L1 2261 2414 -3968 1450 209 3 17 chr3 138646258 138646555 -79390603 + AluJo SINE Alu 1 293 -19 833 214 37 34 chr3 138646555 138646712 -79390446 + L1M4c LINE L1 2414 2578 -3804 2269 137 97 16 chr3 138646875 138647299 -79389859 - HERVH LTR ERV1 -7255 458 1 2229 154 41 20 chr3 138647299 138647740 -79389418 - LTR7 LTR ERV1 0 450 1 1277 153 42 8 chr3 138647740 138647976 -79389182 + LTR1B LTR ERV1 583 826 0 17556 152 35 29 chr3 138647977 138651043 -79386115 + HUERS-P2 LTR ERV1 2 3087 -1 4511 145 103 29 chr3 138651045 138651811 -79385347 + LTR1B LTR ERV1 1 823 -3 571 317 40 55 chr3 138651908 138652615 -79384543 - L1M4 LINE L1 -1095 5051 4356 463 246 36 7 chr3 138652649 138652787 -79384371 - L1MB8 LINE L1 0 6178 6037 232 299 15 0 chr3 138652770 138652837 -79384321 - L1ME1 LINE L1 -162 6004 5937 * 928 133 63 7 chr3 138652914 138653057 -79384101 - THE1B LTR MaLR -2 362 212 1341 160 4 46 chr3 138653170 138653407 -79383751 - THE1B LTR MaLR -137 227 1 681 319 128 0 chr3 138653422 138653914 -79383244 - L1M4 LINE L1 -1981 4165 3611 267 329 31 19 chr3 138653965 138654126 -79383032 - L1M4 LINE L1 -2613 3533 3371 27 62 0 0 chr3 138654189 138654237 -79382921 + AT_rich Low_complexity Low_complexity 1 48 0 836 161 8 0 chr3 138654237 138654361 -79382797 - AluJb SINE Alu -186 126 2 864 194 118 14 chr3 138654815 138655026 -79382132 - L1MB5 LINE L1 -6 6168 5936 2485 131 13 8 chr3 138655029 138655402 -79381756 + THE1C LTR MaLR 1 375 0 10161 116 35 40 chr3 138655402 138655720 -79381438 + THE1B-int LTR MaLR 1 319 -1261 2555 144 8 0 chr3 138655720 138656081 -79381077 + THE1B LTR MaLR 1 364 0 10161 116 35 40 chr3 138656081 138657350 -79379808 + THE1B-int LTR MaLR 319 1580 0 2322 159 16 13 chr3 138657352 138657724 -79379434 + THE1C LTR MaLR 3 375 0 3136 185 15 34 chr3 138657729 138658477 -79378681 - L1MB5 LINE L1 -249 5925 5191 2303 109 0 0 chr3 138658483 138658786 -79378372 - AluY SINE Alu -8 303 1 1037 175 0 48 chr3 138658985 138659191 -79377967 - AluJo SINE Alu -30 282 87 571 271 71 69 chr3 138659259 138659609 -79377549 - MLT1J LTR MaLR -117 394 44 204 232 14 29 chr3 138659845 138659914 -79377244 + T-rich Low_complexity Low_complexity 4 71 0 21 57 0 0 chr3 138660152 138660187 -79376971 + AT_rich Low_complexity Low_complexity 1 35 0 4758 219 32 17 chr3 138660650 138661972 -79375186 + L1MB2 LINE L1 2356 3697 -2449 * 5456 29 11 0 chr3 138661971 138662627 -79374531 - L1PA3 LINE L1 -763 5383 4721 7007 23 16 0 chr3 138662627 138663388 -79373770 + L1PA3 LINE L1 5367 6154 -1 6937 203 36 17 chr3 138663390 138665573 -79371585 + L1MB2 LINE L1 3673 5898 -273 899 214 60 81 chr3 138665589 138665837 -79371321 + Tigger5 DNA MER2_type 8 2207 -116 372 204 204 0 chr3 138665937 138666035 -79371123 + Tigger5 DNA MER2_type 2206 2323 0 1144 220 35 12 chr3 138666035 138666290 -79370868 + L1MB2 LINE L1 5905 6165 -6 339 25 0 0 chr3 138666290 138666330 -79370828 + (TG)n Simple_repeat Simple_repeat 1 40 0 707 176 34 14 chr3 138666737 138666885 -79370273 - L1MCa LINE L1 -6256 170 20 664 307 80 19 chr3 138667097 138667410 -79369748 - MER46C DNA MER2_type -5 333 2 725 152 76 0 chr3 138668276 138668421 -79368737 + MLT1C LTR MaLR 9 164 -303 827 239 87 0 chr3 138669467 138669685 -79367473 + MER97a DNA MER1_type? 1 237 -657 * 1923 198 72 25 chr3 138669684 138670195 -79366963 - L1MC3 LINE L1 0 7785 7251 755 169 24 24 chr3 138670185 138670351 -79366807 - L1M4 LINE L1 -1277 4869 4704 * 1496 199 4 11 chr3 138670485 138670756 -79366402 - AluJo SINE Alu -43 269 1 247 230 70 20 chr3 138670757 138670857 -79366301 - MER113 DNA MER1_type? -379 142 38 371 273 129 0 chr3 138671144 138671283 -79365875 + MIR SINE MIR 13 169 -93 305 318 47 8 chr3 138671291 138671420 -79365738 + MIR SINE MIR 113 246 -16 512 183 42 22 chr3 138672389 138672702 -79364456 + CT-rich Low_complexity Low_complexity 1 319 0 361 224 26 99 chr3 138673664 138673722 -79363436 - L1MC4 LINE L1 0 8042 7981 2451 79 0 0 chr3 138673722 138674012 -79363146 + AluSc SINE Alu 1 290 -19 361 224 26 99 chr3 138674012 138674105 -79363053 - L1MC4 LINE L1 -61 7981 7902 251 250 0 22 chr3 138674129 138674221 -79362937 - L1MC4 LINE L1 -1339 6703 6614 * 558 301 63 25 chr3 138674198 138674563 -79362595 - L1MC4 LINE L1 -112 7930 7552 2224 97 162 8 chr3 138674617 138674988 -79362170 - MSTA LTR MaLR 0 428 1 810 259 31 75 chr3 138675384 138675704 -79361454 - MER46C DNA MER2_type -32 306 1 716 201 29 10 chr3 138675960 138676164 -79360994 + L1MEc LINE L1 2192 2399 -3997 * 4161 244 78 19 chr3 138676163 138677459 -79359699 + L1M4 LINE L1 10 1382 -5160 5526 194 20 123 chr3 138677459 138680616 -79356542 + L1PA15 LINE L1 3002 5827 -338 336 243 0 0 chr3 138682314 138682388 -79354770 - MIR SINE MIR -93 169 96 197 171 24 0 chr3 138684913 138684954 -79352204 + MIR SINE MIR 84 125 -83 554 277 119 0 chr3 138685195 138685372 -79351786 + Charlie1 DNA MER1_type 2 199 -2562 1197 128 116 4 chr3 138685433 138685684 -79351474 + L1MA4 LINE L1 6020 6298 -2 414 221 15 29 chr3 138685685 138685821 -79351337 + Charlie1 DNA MER1_type 2628 2761 0 286 301 58 29 chr3 138685830 138686003 -79351155 + MIR SINE MIR 50 227 -35 274 251 60 75 chr3 138686560 138686869 -79350289 + L1M4 LINE L1 4255 4559 -1587 235 190 35 0 chr3 138687147 138687205 -79349953 + L1P LINE L1 4985 5044 -1102 225 94 0 0 chr3 138687474 138687506 -79349652 + (A)n Simple_repeat Simple_repeat 1 32 0 2458 90 0 3 chr3 138687506 138687818 -79349340 + AluSx SINE Alu 1 311 -1 1466 212 7 20 chr3 138687940 138688237 -79348921 + AluJo SINE Alu 1 293 -19 251 250 0 22 chr3 138688356 138688448 -79348710 - L1MC4 LINE L1 -1339 6703 6614 * 254 228 0 76 chr3 138688425 138688517 -79348641 - L1MC4 LINE L1 -112 7930 7846 300 111 0 0 chr3 138690108 138690153 -79347005 + (GGA)n Simple_repeat Simple_repeat 2 46 0 354 244 0 0 chr3 138690521 138690603 -79346555 + MIR SINE MIR 65 146 -116 1447 202 153 33 chr3 138690604 138691055 -79346103 - MLT1D LTR MaLR 0 505 1 263 140 20 0 chr3 138692039 138692089 -79345069 + GA-rich Low_complexity Low_complexity 3 53 0 851 259 137 36 chr3 138692708 138693125 -79344033 + L2 LINE L2 2855 3313 0 220 333 183 22 chr3 138693210 138693390 -79343768 + L2 LINE L2 2849 3057 -215 2172 129 0 19 chr3 138693466 138693775 -79343383 - AluSx SINE Alu -9 303 1 720 268 64 14 chr3 138694127 138694347 -79342811 + MLT1F1-int LTR MaLR 383 613 -758 409 331 22 16 chr3 138694530 138694714 -79342444 + MLT1F1-int LTR MaLR 699 883 -488 483 253 55 142 chr3 138694910 138695289 -79341869 + MLT1F1-int LTR MaLR 1141 1371 0 604 242 16 0 chr3 138695302 138695426 -79341732 + MLT1F1 LTR MaLR 26 151 -416 283 347 108 24 chr3 138695546 138695834 -79341324 + L2 LINE L2 2933 3244 -28 216 0 0 0 chr3 138696193 138696217 -79340941 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 638 291 141 34 chr3 138696459 138696785 -79340373 - MLT1G3 LTR MaLR -222 373 13 247 316 51 0 chr3 138696793 138696872 -79340286 + MLT1I LTR MaLR 163 245 -164 548 353 66 12 chr3 138697134 138697375 -79339783 + L1M4 LINE L1 4028 4281 -1865 232 214 114 0 chr3 138698083 138698153 -79339005 + LTR67 LTR ERVL 457 534 -23 316 320 49 0 chr3 138698250 138698372 -79338786 - MIR SINE MIR -70 192 65 377 254 138 26 chr3 138699212 138699401 -79337757 + MER113 DNA MER1_type? 2 211 -310 283 242 15 0 chr3 138699423 138699489 -79337669 + MER113 DNA MER1_type? 454 520 -1 410 367 50 0 chr3 138699780 138699979 -79337179 + L2 LINE L2 2215 2423 -891 183 351 0 0 chr3 138699994 138700051 -79337107 + L2 LINE L2 3163 3219 -53 561 281 35 0 chr3 138700064 138700235 -79336923 - MLT1I LTR MaLR 0 409 233 28 71 0 0 chr3 138700713 138700769 -79336389 + AT_rich Low_complexity Low_complexity 1 56 0 1590 137 5 104 chr3 138700769 138700821 -79336337 - MER4A LTR ERV1 0 664 608 2303 84 7 13 chr3 138700821 138701119 -79336039 + AluSc SINE Alu 1 296 -13 1590 137 5 104 chr3 138701119 138701447 -79335711 - MER4A LTR ERV1 -56 608 263 638 131 0 10 chr3 138701447 138701546 -79335612 - MER4A LTR ERV1 -566 98 1 258 309 52 7 chr3 138701566 138701702 -79335456 + Charlie8 DNA MER1_type 114 255 -2162 2183 198 81 6 chr3 138702349 138702858 -79334300 + L1MB1 LINE L1 5615 6161 -7 641 266 83 20 chr3 138703121 138703373 -79333785 + MLT1H LTR MaLR 8 275 -274 485 241 35 37 chr3 138703354 138703541 -79333617 + MLT1H LTR MaLR 388 590 0 * 242 330 0 10 chr3 138703713 138703813 -79333345 + MLT1G3 LTR MaLR 432 530 0 191 341 24 0 chr3 138705773 138705858 -79331300 + MIR SINE MIR 102 188 -74 2022 141 173 2 chr3 138705901 138706305 -79330853 + MER101 LTR ERV1 2 474 0 247 254 98 41 chr3 138706356 138706478 -79330680 - MIR SINE MIR -8 254 126 368 203 28 49 chr3 138706819 138706962 -79330196 + L2 LINE L2 2844 2983 -330 2319 74 0 18 chr3 138707673 138707984 -79329174 - AluSg SINE Alu 0 306 1 775 266 128 57 chr3 138709121 138709542 -79327616 + LTR16A1 LTR ERVL 7 457 0 598 258 134 5 chr3 138709869 138710078 -79327080 + MIR SINE MIR 25 260 -2 821 207 65 54 chr3 138711486 138711894 -79325264 - LTR55 LTR ERV 0 548 71 199 277 101 8 chr3 138712056 138712175 -79324983 - L2 LINE L2 -5 3308 3179 821 248 62 67 chr3 138714552 138715003 -79322155 + MLT1K LTR MaLR 140 588 0 374 286 155 5 chr3 138715494 138715700 -79321458 - MIR SINE MIR -6 256 20 453 271 333 5 chr3 138716771 138717357 -79319801 + LTR50 LTR ERVL 5 782 -13 233 230 47 128 chr3 138717947 138718095 -79319063 + MER5A DNA MER1_type 4 139 -50 1155 116 0 0 chr3 138718116 138718280 -79318878 - U1 snRNA snRNA 0 165 2 192 267 12 93 chr3 138719128 138719214 -79317944 + MIR SINE MIR 26 104 -104 255 177 177 16 chr3 138719453 138719577 -79317581 + MER113 DNA MER1_type? 6 149 -372 1684 221 101 65 chr3 138719579 138720492 -79316666 - L1ME3A LINE L1 -6 6156 5191 414 293 15 8 chr3 138720608 138720741 -79316417 - L1ME3A LINE L1 -2309 3837 3704 248 269 0 0 chr3 138720748 138720815 -79316343 + AluJ/FLAM SINE Alu 3 69 -233 1507 186 11 0 chr3 138720755 138721035 -79316123 + AluJb SINE Alu 10 292 -20 237 178 0 0 chr3 138721035 138721080 -79316078 + (CAGGG)n Simple_repeat Simple_repeat 4 48 0 4599 113 75 65 chr3 138721154 138722025 -79315133 - L1PA16 LINE L1 0 6166 5288 4347 200 16 10 chr3 138722023 138723004 -79314154 - L1 LINE L1 -2201 3945 2959 * 256 174 0 0 chr3 138723006 138723052 -79314106 + LTR19-int LTR ERV1 875 920 -4666 * 3009 104 28 25 chr3 138723028 138723498 -79313660 + LTR19-int LTR ERV1 1118 1588 -3998 25 0 0 0 chr3 138723498 138723523 -79313635 + AT_rich Low_complexity Low_complexity 1 25 0 25 51 0 0 chr3 138723661 138723700 -79313458 + AT_rich Low_complexity Low_complexity 1 39 0 1402 196 14 25 chr3 138724811 138725174 -79311984 + LTR19-int LTR ERV1 1823 2181 -3036 477 139 28 0 chr3 138725297 138725369 -79311789 + AluS SINE Alu 221 294 -18 1983 136 7 3 chr3 138725416 138725726 -79311432 + AluJo SINE Alu 1 311 -1 456 182 73 18 chr3 138725746 138725856 -79311302 + L1MC2 LINE L1 6220 6335 -9 273 98 0 0 chr3 138726063 138726104 -79311054 + (TG)n Simple_repeat Simple_repeat 2 42 0 936 66 8 0 chr3 138726693 138726837 -79310321 + AluSg/x SINE Alu 159 303 0 409 265 142 38 chr3 138726839 138727050 -79310108 - MIR SINE MIR -6 256 24 1549 173 14 11 chr3 138728428 138728711 -79308447 + L1PA15 LINE L1 5875 6158 -7 833 226 35 22 chr3 138728714 138728940 -79308218 + L1M4 LINE L1 4490 4718 -1428 2163 94 0 3 chr3 138728945 138729232 -79307926 + AluSx SINE Alu 14 299 -13 3841 223 40 48 chr3 138729660 138730717 -79306441 - HUERS-P3b LTR ERV1 -1601 5817 4770 654 356 76 31 chr3 138730843 138730998 -79306160 - L1M4 LINE L1 -1083 5063 4916 2699 147 0 36 chr3 138730998 138731448 -79305710 + Tigger2a DNA MER2_type 1 434 0 654 356 76 31 chr3 138731448 138731871 -79305287 - L1M4 LINE L1 -1230 4916 4459 4022 186 68 15 chr3 138731911 138733568 -79303590 - L1MB8 LINE L1 0 6178 4436 3983 194 57 24 chr3 138733569 138733585 -79303573 + MER21B LTR ERV1 5 19 -844 336 64 0 0 chr3 138733585 138733632 -79303526 + (TA)n Simple_repeat Simple_repeat 2 48 0 3983 194 57 24 chr3 138733632 138734411 -79302747 + MER21B LTR ERV1 19 826 -37 535 179 0 0 chr3 138734464 138734576 -79302582 - L1MB8 LINE L1 -1722 4424 4313 3027 133 9 15 chr3 138734576 138735043 -79302115 - Tigger3b DNA MER2_type 0 1232 769 333 27 0 228 chr3 138735060 138735244 -79301914 + (TAAAAA)n Simple_repeat Simple_repeat 3 144 0 22 0 0 0 chr3 138735244 138735266 -79301892 + AT_rich Low_complexity Low_complexity 1 22 0 3851 147 54 16 chr3 138735266 138735993 -79301165 - Tigger3b DNA MER2_type -477 754 1 917 193 6 0 chr3 138736000 138736181 -79300977 - L1MB8 LINE L1 -1835 4311 4130 231 314 12 12 chr3 138736405 138736491 -79300667 - L1MB8 LINE L1 -1989 4157 4072 658 225 115 16 chr3 138736531 138736713 -79300445 - MIR SINE MIR -15 247 48 700 125 0 36 chr3 138737216 138737328 -79299830 - MER4B LTR ERV1 0 610 503 2599 103 7 49 chr3 138737341 138737373 -79299785 - MER4B LTR ERV1 -219 391 359 351 0 0 0 chr3 138737373 138737412 -79299746 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1853 132 0 7 chr3 138737413 138737693 -79299465 - AluSg SINE Alu -32 278 1 2599 103 7 49 chr3 138737693 138738066 -79299092 - MER4B LTR ERV1 -250 360 1 312 130 0 0 chr3 138738157 138738211 -79298947 - FLAM_A SINE Alu 0 133 80 22 0 0 0 chr3 138739882 138739904 -79297254 + AT_rich Low_complexity Low_complexity 1 22 0 269 300 107 29 chr3 138740061 138740658 -79296500 + L1MC/D LINE L1 4813 5454 -743 2710 122 86 0 chr3 138740823 138741251 -79295907 - MER4C LTR ERV1 0 465 1 354 127 0 0 chr3 138741533 138741604 -79295554 + (TTCC)n Simple_repeat Simple_repeat 4 74 0 205 318 204 14 chr3 138743520 138743809 -79293349 - L2 LINE L2 -4 3309 2966 217 266 57 24 chr3 138743890 138744014 -79293144 - L2 LINE L2 -554 2760 2633 961 300 42 28 chr3 138745197 138745678 -79291480 - L1MC4a LINE L1 -359 7449 7031 438 94 0 0 chr3 138746051 138746115 -79291043 + (CA)n Simple_repeat Simple_repeat 1 64 0 344 247 11 28 chr3 138746163 138746341 -79290817 + (CATA)n Simple_repeat Simple_repeat 1 175 0 291 280 147 7 chr3 138746464 138746607 -79290551 - MIR SINE MIR -79 183 21 2512 154 44 21 chr3 138746839 138747313 -79289845 + MER31A LTR ERV1 1 485 0 2132 70 4 0 chr3 138747421 138747691 -79289467 - AluY SINE Alu -35 276 6 289 336 22 8 chr3 138747824 138747958 -79289200 + MIR SINE MIR 77 212 -50 445 318 72 80 chr3 138747991 138748132 -79289026 - L1M4 LINE L1 -817 5398 5257 782 167 8 0 chr3 138748132 138748258 -79288900 - FLAM_A SINE Alu -2 131 5 445 318 72 80 chr3 138748258 138748632 -79288526 - L1M4 LINE L1 -958 5257 4887 5525 149 14 20 chr3 138748969 138749948 -79287210 - L1PB2 LINE L1 0 6151 5168 225 0 0 0 chr3 138749948 138749973 -79287185 + (TTA)n Simple_repeat Simple_repeat 1 25 0 5525 149 14 20 chr3 138749973 138750733 -79286425 - L1PB2 LINE L1 -983 5168 4416 288 0 0 0 chr3 138750733 138750765 -79286393 + (TATG)n Simple_repeat Simple_repeat 2 33 0 5525 149 14 20 chr3 138750765 138750910 -79286248 - L1PB2 LINE L1 -1735 4416 4272 1394 175 10 38 chr3 138750923 138750996 -79286162 + MLT1B LTR MaLR 106 179 -211 2474 49 3 0 chr3 138750996 138751301 -79285857 + AluY SINE Alu 2 307 -4 1394 175 10 38 chr3 138751301 138751518 -79285640 + MLT1B LTR MaLR 179 388 -2 3394 225 42 25 chr3 138753068 138753130 -79284028 - L1MEc LINE L1 -2976 3239 3180 2123 110 3 0 chr3 138753130 138753440 -79283718 - AluSq SINE Alu 0 313 3 3394 225 42 25 chr3 138753440 138754651 -79282507 - L1MEc LINE L1 -3035 3180 1988 1652 261 94 25 chr3 138754664 138755492 -79281666 - L1MEc LINE L1 -4499 1897 1013 1930 268 170 22 chr3 138755493 138756310 -79280848 - L1MEc LINE L1 -5424 972 35 949 267 181 3 chr3 138756453 138756824 -79280334 + MLT1J LTR MaLR 73 509 -2 474 222 90 21 chr3 138756883 138757027 -79280131 - MLT1L LTR MaLR -152 463 310 315 228 177 0 chr3 138757098 138757177 -79279981 - MLT1J2 LTR MaLR -309 202 72 269 360 0 10 chr3 138758094 138758194 -79278964 + (CA)n Simple_repeat Simple_repeat 2 100 0 444 280 83 5 chr3 138759176 138759369 -79277789 + Charlie8 DNA MER1_type 86 293 -2124 462 294 129 26 chr3 138759639 138759948 -79277210 - LTR16A LTR ERVL -4 446 106 2386 216 55 75 chr3 138760701 138761466 -79275692 + L1MC3 LINE L1 6225 6975 -810 693 223 169 35 chr3 138761466 138761785 -79275373 - MLT1A1 LTR MaLR -3 362 1 2386 216 55 75 chr3 138761785 138761818 -79275340 + L1MC3 LINE L1 6975 7007 -778 2103 148 37 11 chr3 138762022 138762399 -79274759 - MLT1B LTR MaLR -1 389 3 1675 168 14 3 chr3 138763715 138764001 -79273157 - AluJb SINE Alu -23 289 1 1406 226 83 45 chr3 138764215 138764505 -79272653 - MLT1C LTR MaLR -6 461 147 1650 203 10 54 chr3 138764505 138764913 -79272245 + MLT1B LTR MaLR 1 390 0 1406 226 83 45 chr3 138764913 138765065 -79272093 - MLT1C LTR MaLR -320 147 2 428 231 59 11 chr3 138765241 138765411 -79271747 - MLT1H LTR MaLR 0 549 382 890 207 26 16 chr3 138765437 138765630 -79271528 + MER58A DNA MER1_type 30 224 0 285 262 48 40 chr3 138765748 138765874 -79271284 - MLT1H LTR MaLR -409 140 14 1879 204 60 5 chr3 138766439 138766841 -79270317 - MLT1C LTR MaLR -6 461 38 204 259 247 12 chr3 138767193 138767274 -79269884 - MIR SINE MIR -78 130 31 705 204 102 21 chr3 138767508 138767694 -79269464 + MER58C DNA MER1_type 1 201 -14 247 280 0 63 chr3 138767711 138767854 -79269304 + G-rich Low_complexity Low_complexity 6 139 0 210 300 0 72 chr3 138768114 138768294 -79268864 + G-rich Low_complexity Low_complexity 4 170 0 4299 141 32 25 chr3 138768776 138769499 -79267659 + MER50 LTR ERV1 7 734 0 5397 129 57 4 chr3 138770223 138771191 -79265967 - L1MC1 LINE L1 0 6333 5263 356 250 116 83 chr3 138771597 138771878 -79265280 - MER102b DNA MER1_type 0 330 51 1757 218 66 21 chr3 138773711 138774180 -79262978 - MLT1D LTR MaLR 0 505 16 240 333 11 11 chr3 138774302 138774389 -79262769 - L2 LINE L2 -50 3222 3136 345 365 0 26 chr3 138774423 138774538 -79262620 + L1MC/D LINE L1 5554 5665 -2143 25 31 0 0 chr3 138774546 138774578 -79262580 + AT_rich Low_complexity Low_complexity 1 32 0 339 197 16 197 chr3 138774619 138774928 -79262230 - L1MC4 LINE L1 0 8322 8070 373 224 3 50 chr3 138774930 138775052 -79262106 - L1MC4 LINE L1 -1340 6982 1995 1425 124 9 5 chr3 138775063 138775273 -79261885 - L1PA8A LINE L1 -9 6122 5912 309 284 26 21 chr3 138775355 138775545 -79261613 - L1PA8A LINE L1 -228 5903 5713 205 308 196 0 chr3 138778121 138778228 -79258930 + MIR SINE MIR 3 130 -132 411 232 62 34 chr3 138778659 138778836 -79258322 - MLT1J LTR MaLR 0 511 330 470 323 32 0 chr3 138778904 138779093 -79258065 - MLT1J LTR MaLR -309 202 8 191 412 25 17 chr3 138780728 138780847 -79256311 + L3 LINE CR1 475 594 -983 539 234 55 0 chr3 138781413 138781541 -79255617 + MIR SINE MIR 121 255 -7 503 182 10 10 chr3 138781656 138781755 -79255403 - L1PA2 LINE L1 -3 6152 6054 76 63 0 0 chr3 138781790 138781917 -79255241 + GC_rich Low_complexity Low_complexity 1 127 0 34 55 0 0 chr3 138781982 138782037 -79255121 + GC_rich Low_complexity Low_complexity 1 55 0 10358 82 0 0 chr3 138782452 138784672 -79252486 + L1PA6 LINE L1 3914 6154 0 560 300 50 0 chr3 138784675 138784855 -79252303 - MLT1G1 LTR MaLR -406 189 1 434 308 133 0 chr3 138784866 138785100 -79252058 + HAL1 LINE L1 1544 1808 -699 1534 127 9 0 chr3 138785247 138785467 -79251691 + AluSq SINE Alu 1 222 -91 1519 158 107 16 chr3 138787568 138787878 -79249280 + MER44D DNA MER2_type 2 609 0 452 288 88 18 chr3 138787953 138788123 -79249035 + MIR SINE MIR 20 201 -61 210 312 9 37 chr3 138790834 138790943 -79246215 + G-rich Low_complexity Low_complexity 4 109 0 269 313 9 17 chr3 138791011 138791126 -79246032 + GA-rich Low_complexity Low_complexity 3 116 0 198 0 0 0 chr3 138791126 138791148 -79246010 + (C)n Simple_repeat Simple_repeat 1 22 0 1337 137 141 0 chr3 138792058 138792314 -79244844 - AluJo SINE Alu -15 297 6 734 317 71 55 chr3 138792935 138793373 -79243785 + L2 LINE L2 2828 3272 0 315 267 0 0 chr3 138793431 138793577 -79243581 + (CA)n Simple_repeat Simple_repeat 1 146 0 231 318 73 0 chr3 138793859 138793969 -79243189 - MIR3 SINE MIR -52 156 39 189 237 0 0 chr3 138794418 138794456 -79242702 + MIR SINE MIR 109 146 -62 466 314 58 5 chr3 138794795 138794983 -79242175 + MIR SINE MIR 64 261 -1 547 273 99 0 chr3 138795122 138795283 -79241875 - MER91B DNA MER1_type -10 180 4 283 342 71 26 chr3 138795322 138795477 -79241681 + MIR SINE MIR 9 170 -92 628 295 98 19 chr3 138796072 138796303 -79240855 + MIR SINE MIR 17 261 -1 460 314 71 12 chr3 138796428 138796597 -79240561 + MIR SINE MIR 21 199 -63 232 270 130 9 chr3 138796623 138796738 -79240420 - L2 LINE L2 -334 2979 2851 220 225 0 0 chr3 138796901 138796941 -79240217 + MIR SINE MIR 210 249 -13 271 318 61 23 chr3 138797981 138798113 -79239045 - MIR3 SINE MIR -60 148 12 382 331 74 7 chr3 138799295 138799443 -79237715 + MIR SINE MIR 18 175 -87 740 169 45 11 chr3 138801402 138801579 -79235579 + MER53 DNA DNA 1 183 -6 186 377 0 0 chr3 138802023 138802092 -79235066 + L2 LINE L2 3235 3303 -10 246 298 106 19 chr3 138802379 138802483 -79234675 + MIR3 SINE MIR 85 197 -11 448 362 34 19 chr3 138802765 138802972 -79234186 + MIR SINE MIR 50 259 -3 389 245 65 22 chr3 138803087 138803226 -79233932 + L1MC5 LINE L1 7610 7754 -207 216 301 182 59 chr3 138803483 138803686 -79233472 + L2 LINE L2 3086 3313 0 27 49 0 0 chr3 138805144 138805185 -79231973 + GC_rich Low_complexity Low_complexity 1 41 0 22 88 0 0 chr3 138805214 138805271 -79231887 + GC_rich Low_complexity Low_complexity 1 57 0 22 35 0 0 chr3 138805283 138805312 -79231846 + GC_rich Low_complexity Low_complexity 1 29 0 304 296 31 70 chr3 138805804 138805932 -79231226 + L1ME3A LINE L1 4770 4901 -1245 1902 149 14 3 chr3 138805932 138806228 -79230930 - AluSx SINE Alu -7 305 7 304 296 31 70 chr3 138806228 138806386 -79230772 + L1ME3A LINE L1 4901 5045 -1101 1570 289 44 8 chr3 138806388 138807097 -79230061 + L1ME3A LINE L1 5232 5967 -203 2803 6 0 0 chr3 138807109 138807420 -79229738 + AluYa5 SINE Alu 1 311 0 2041 98 30 13 chr3 138807636 138807941 -79229217 + AluY SINE Alu 1 310 -1 1637 140 0 60 chr3 138808179 138808479 -79228679 + AluJb SINE Alu 17 298 -14 2328 84 10 0 chr3 138808545 138808853 -79228305 + AluSq SINE Alu 3 313 0 229 319 164 9 chr3 138809554 138809670 -79227488 - L2 LINE L2 0 3272 3139 341 176 193 67 chr3 138809991 138810110 -79227048 - L1ME4a LINE L1 -4 6117 5984 201 39 0 0 chr3 138810677 138810703 -79226455 + (TC)n Simple_repeat Simple_repeat 2 27 0 395 294 171 0 chr3 138811044 138811231 -79225927 + L2 LINE L2 1778 1996 -1318 546 210 108 16 chr3 138811233 138811419 -79225739 - L1MB7 LINE L1 0 6184 5982 290 331 97 0 chr3 138812289 138812443 -79224715 + LTR67 LTR ERVL 389 557 0 304 300 0 0 chr3 138813041 138813121 -79224037 + MIR SINE MIR 168 247 -15 217 337 56 0 chr3 138813382 138813471 -79223687 - L2 LINE L2 -468 2846 2753 194 242 0 16 chr3 138813513 138813575 -79223583 + (CA)n Simple_repeat Simple_repeat 2 62 0 337 270 27 27 chr3 138813579 138813727 -79223431 - MLT1J2 LTR MaLR -43 407 260 712 263 69 0 chr3 138814166 138814341 -79222817 - MER5A DNA MER1_type 0 189 3 206 301 214 0 chr3 138815089 138815192 -79221966 + MIR SINE MIR 17 141 -67 625 289 169 21 chr3 138815198 138815631 -79221527 - L2 LINE L2 -4 3309 2813 2457 212 13 7 chr3 138815994 138816456 -79220702 - MLT1C LTR MaLR -2 465 1 438 310 30 37 chr3 138816839 138817110 -79220048 - L1MC4a LINE L1 -1834 5974 5706 337 260 42 0 chr3 138817715 138817811 -79219347 - L2 LINE L2 -336 2977 2878 207 327 0 0 chr3 138818372 138818427 -79218731 - MER5A DNA MER1_type -36 153 99 336 314 65 0 chr3 138818596 138818720 -79218438 - L2 LINE L2 -3 3269 3138 493 329 40 18 chr3 138818766 138819043 -79218115 + L2 LINE L2 2907 3189 -124 1100 264 22 19 chr3 138819110 138819424 -79217734 + L1M4 LINE L1 4051 4365 -1781 708 207 125 54 chr3 138819452 138819804 -79217354 + L1MB4 LINE L1 35 411 -5973 4349 168 18 24 chr3 138819910 138820277 -79216881 + L1MB4 LINE L1 5460 5828 -588 2236 68 4 0 chr3 138820277 138820582 -79216576 + AluY SINE Alu 1 306 0 4349 168 18 24 chr3 138820582 138821171 -79215987 + L1MB4 LINE L1 5828 6416 0 396 0 0 0 chr3 138821203 138821247 -79215911 + (TA)n Simple_repeat Simple_repeat 1 44 0 273 275 133 8 chr3 138821379 138821499 -79215659 - L2 LINE L2 -245 3068 2934 201 273 200 18 chr3 138821825 138821935 -79215223 + L2 LINE L2 3159 3288 -25 2096 201 61 33 chr3 138822042 138822583 -79214575 - MER74A LTR ERVL 0 558 3 352 297 141 43 chr3 138822646 138823134 -79214024 - L2 LINE L2 -670 2644 2109 1935 141 13 0 chr3 138823180 138823484 -79213674 - AluSx SINE Alu -4 308 1 247 271 116 26 chr3 138823847 138824002 -79213156 + L1MC/D LINE L1 5297 5465 -2343 2144 182 42 14 chr3 138824051 138824484 -79212674 - LTR24B LTR ERV1 -7 569 125 2127 87 14 3 chr3 138824484 138824770 -79212388 - AluSc SINE Alu -20 289 1 1283 178 140 3 chr3 138824797 138825115 -79212043 - L1MB3 LINE L1 -7 6176 5813 1995 131 0 0 chr3 138825183 138825489 -79211669 + AluSx SINE Alu 1 306 0 873 164 0 0 chr3 138825586 138825732 -79211426 - AluJb SINE Alu -8 304 159 346 276 23 133 chr3 138827194 138827593 -79209565 - MLT1J LTR MaLR -40 471 117 280 322 73 38 chr3 138827858 138828119 -79209039 - L1MC5 LINE L1 -32 7929 7660 1804 144 3 20 chr3 138828593 138828891 -79208267 - AluJb SINE Alu -19 293 1 1371 280 145 21 chr3 138828891 138829721 -79207437 - L1ME2 LINE L1 -56 6108 5140 2183 99 3 0 chr3 138829721 138830013 -79207145 + AluSq SINE Alu 1 293 -20 1371 280 145 21 chr3 138830013 138830179 -79206979 - L1ME2 LINE L1 -1024 5140 4996 906 202 16 0 chr3 138830294 138830482 -79206676 - AluJb SINE Alu -2 310 120 252 291 35 35 chr3 138830482 138830568 -79206590 - L1ME2 LINE L1 -1992 4154 4069 1129 216 57 12 chr3 138830626 138830871 -79206287 - MLT1D LTR MaLR 0 505 250 4367 204 21 33 chr3 138830873 138832005 -79205153 - L1 LINE L1 -2178 3968 2850 1050 225 21 4 chr3 138832011 138832247 -79204911 - MLT1D LTR MaLR -258 247 8 718 251 15 0 chr3 138832255 138832454 -79204704 - L1ME2 LINE L1 -2139 4007 3806 488 288 105 0 chr3 138832579 138832764 -79204394 + MIR SINE MIR 56 258 -4 295 308 93 0 chr3 138833653 138833760 -79203398 - MLT1K LTR MaLR -14 574 458 204 226 57 0 chr3 138834944 138834997 -79202161 - MIR SINE MIR -118 144 89 1493 202 106 44 chr3 138835959 138836410 -79200748 - MER74A LTR ERVL -60 498 20 682 290 50 19 chr3 138836494 138836644 -79200514 - L1M4 LINE L1 -783 5363 5219 2247 104 0 3 chr3 138836644 138836953 -79200205 - AluSp SINE Alu -5 308 1 682 290 50 19 chr3 138836953 138837123 -79200035 - L1M4 LINE L1 -927 5219 5033 236 257 219 19 chr3 138837655 138837724 -79199434 + MIR SINE MIR 22 76 -186 503 292 87 27 chr3 138837724 138837909 -79199249 + MER91A DNA MER1_type 1 196 0 236 257 219 19 chr3 138837909 138837944 -79199214 + MIR SINE MIR 76 147 -115 642 296 132 14 chr3 138840239 138840587 -79196571 - L2 LINE L2 -6 3307 2919 4836 224 37 30 chr3 138841012 138841830 -79195328 + L1M4 LINE L1 3438 4249 -1897 1703 173 28 0 chr3 138841830 138842119 -79195039 + AluJo SINE Alu 1 297 -15 2166 113 3 3 chr3 138842119 138842428 -79194730 + AluSc SINE Alu 1 309 0 4836 224 37 30 chr3 138842428 138843002 -79194156 + L1M4 LINE L1 4248 4840 -1306 1653 172 33 13 chr3 138843074 138843455 -79193703 - L1ME2 LINE L1 -221 5943 5399 2174 108 28 0 chr3 138843456 138843781 -79193377 - MSTA LTR MaLR -94 334 1 2621 168 6 16 chr3 138843786 138844279 -79192879 + L1MC1 LINE L1 5772 6259 -74 1384 193 72 71 chr3 138844277 138844475 -79192683 - L1 LINE L1 -2362 4744 4548 * 2195 124 0 6 chr3 138844475 138844789 -79192369 + AluSx SINE Alu 1 312 0 1384 193 72 71 chr3 138844789 138845374 -79191784 - L1 LINE L1 -2558 4548 2824 1579 257 43 4 chr3 138845387 138845893 -79191265 - L1 LINE L1 -4159 2948 2423 1002 198 57 0 chr3 138845892 138846155 -79191003 + L1MA4 LINE L1 6023 6300 0 * 2429 189 45 16 chr3 138846169 138846893 -79190265 - L1 LINE L1 -4599 2438 1692 386 328 17 17 chr3 138846875 138847055 -79190103 - L1 LINE L1 -5833 1204 1025 * 22 88 0 0 chr3 138847167 138847224 -79189934 + GC_rich Low_complexity Low_complexity 1 57 0 23 33 0 0 chr3 138847236 138847266 -79189892 + GC_rich Low_complexity Low_complexity 1 30 0 229 85 0 43 chr3 138847442 138847489 -79189669 + (CCCCG)n Simple_repeat Simple_repeat 4 48 0 211 244 52 61 chr3 138848233 138848348 -79188810 - MIR SINE MIR -65 143 30 490 246 15 23 chr3 138848974 138849104 -79188054 + L2 LINE L2 2681 2809 -505 252 266 11 79 chr3 138849405 138849582 -79187576 - HAL1b LINE L1 -976 372 208 850 289 80 3 chr3 138849584 138849871 -79187287 + L2 LINE L2 2968 3276 -37 477 223 23 47 chr3 138850950 138851132 -79186026 + MIR SINE MIR 48 222 -40 1573 157 11 25 chr3 138851748 138852078 -79185080 + AluJo SINE Alu 1 326 0 484 292 91 5 chr3 138852145 138852354 -79184804 + LTR33 LTR ERVL 60 286 -235 867 255 43 8 chr3 138852670 138852925 -79184233 - HAL1 LINE L1 -772 1735 1472 2032 160 14 22 chr3 138852927 138853130 -79184028 + MLT1A1 LTR MaLR 1 201 -164 1798 152 50 141 chr3 138853130 138853605 -79183553 - MSTB1 LTR MaLR 0 432 1 2032 160 14 22 chr3 138853605 138853769 -79183389 + MLT1A1 LTR MaLR 201 365 0 353 241 65 35 chr3 138853775 138853974 -79183184 - HAL1 LINE L1 -1040 1467 1263 444 274 94 49 chr3 138854721 138854944 -79182214 - MLT1K LTR MaLR -310 278 46 297 294 100 28 chr3 138856189 138856357 -79180801 - MLT1J LTR MaLR -44 467 284 324 0 0 0 chr3 138856357 138856393 -79180765 + (CA)n Simple_repeat Simple_repeat 2 37 0 297 294 100 28 chr3 138856393 138856404 -79180754 - MLT1J LTR MaLR -227 284 275 263 272 78 10 chr3 138856505 138856608 -79180550 + MIR SINE MIR 29 138 -70 183 238 24 0 chr3 138856825 138856867 -79180291 - MIR SINE MIR -1 261 219 299 330 52 0 chr3 138856872 138856987 -79180171 - MIR SINE MIR -2 260 140 251 355 47 6 chr3 138856995 138857167 -79179991 + HAL1 LINE L1 1002 1180 -1327 275 222 173 0 chr3 138857655 138857736 -79179422 + L1ME4a LINE L1 5382 5476 -645 381 306 50 14 chr3 138857808 138858027 -79179131 + L1ME4a LINE L1 5619 5845 -276 318 201 40 98 chr3 138858080 138858254 -79178904 + L1ME4a LINE L1 5957 6120 -1 2336 57 3 10 chr3 138858477 138858776 -79178382 + AluY SINE Alu 1 297 -14 2742 119 25 11 chr3 138858776 138859206 -79177952 - L1MB2 LINE L1 -11 6160 5725 422 322 49 35 chr3 138859221 138859697 -79177461 - L1ME4a LINE L1 -247 5874 5391 407 287 82 0 chr3 138860902 138861024 -79176134 - L2 LINE L2 -2 3311 3180 325 318 32 0 chr3 138861662 138861788 -79175370 - L2 LINE L2 -514 2800 2671 2221 200 55 0 chr3 138861798 138862267 -79174891 + L1MB3 LINE L1 5687 6181 -2 288 207 99 58 chr3 138862481 138862602 -79174556 - LTR33 LTR ERVL -281 240 115 181 314 113 75 chr3 138864276 138864435 -79172723 - MER5A DNA MER1_type -22 167 3 458 269 185 44 chr3 138864439 138865028 -79172130 - L2 LINE L2 -37 3276 2600 776 303 10 0 chr3 138865097 138865305 -79171853 - MIR SINE MIR -35 227 18 1753 117 53 7 chr3 138865323 138865606 -79171552 + AluY SINE Alu 5 300 -11 243 191 0 0 chr3 138866181 138866223 -79170935 + MIR SINE MIR 108 149 -59 272 362 47 7 chr3 138866985 138867134 -79170024 + L2 LINE L2 2175 2329 -985 246 167 42 0 chr3 138867147 138867195 -79169963 - Zaphod DNA AcHobo 0 4031 3982 * 309 340 118 46 chr3 138867194 138867456 -79169702 - MER115 DNA AcHobo -252 441 161 1954 134 3 7 chr3 138867786 138868091 -79169067 + AluSx SINE Alu 1 304 -8 1386 233 114 16 chr3 138868244 138868673 -79168485 + MLT1H LTR MaLR 75 545 -4 473 278 32 0 chr3 138868983 138869109 -79168049 + L2 LINE L2 3137 3266 -6 599 274 156 43 chr3 138869295 138869595 -79167563 + L2 LINE L2 2415 2680 -633 1541 183 33 7 chr3 138869595 138869896 -79167262 + AluJo SINE Alu 1 309 -3 599 274 156 43 chr3 138869896 138870203 -79166955 + L2 LINE L2 2680 3088 -225 2510 175 78 31 chr3 138871139 138871625 -79165533 - LTR64 LTR ERVK 0 513 5 918 160 93 0 chr3 138871635 138871785 -79165373 - FRAM SINE Alu -2 164 1 1426 247 92 8 chr3 138871906 138872298 -79164860 - MLT1G1 LTR MaLR -1 594 170 3565 75 8 2 chr3 138872298 138872805 -79164353 + L1P LINE L1 3478 3987 -2159 4940 28 2 0 chr3 138872918 138873525 -79163633 - L1P LINE L1 -981 5165 4558 284 289 27 53 chr3 138873652 138873839 -79163319 - L2 LINE L2 -51 3262 3081 211 156 66 82 chr3 138873886 138874008 -79163150 + (TTAA)n Simple_repeat Simple_repeat 1 120 0 1072 256 52 0 chr3 138874008 138874332 -79162826 - L1MD3 LINE L1 -4 7991 7651 638 291 117 15 chr3 138874338 138874671 -79162487 - L2 LINE L2 -429 2885 2519 434 311 117 41 chr3 138874903 138875060 -79162098 - L1MC/D LINE L1 -2027 5781 5637 4773 104 1 3 chr3 138875060 138875740 -79161418 - L1PB1 LINE L1 -8 6143 5465 434 311 117 41 chr3 138875740 138876071 -79161087 - L1MC/D LINE L1 -2171 5637 5256 962 169 0 33 chr3 138876455 138876638 -79160520 + FRAM SINE Alu 1 176 0 347 260 47 0 chr3 138876751 138876878 -79160280 - L1MC/D LINE L1 -1489 4657 4525 256 255 10 69 chr3 138877377 138877479 -79159679 + MLT1H LTR MaLR 454 549 0 227 330 52 31 chr3 138877501 138877692 -79159466 - L1MC/D LINE L1 -1825 4321 4127 345 305 64 64 chr3 138877773 138878009 -79159149 - L1 LINE L1 -1030 5116 4881 41149 30 29 1 chr3 138878724 138884710 -79152448 + L1HS LINE L1 1 6155 0 729 209 19 202 chr3 138884760 138885205 -79151953 + L1MC4 LINE L1 7372 7600 -442 4960 63 54 86 chr3 138885205 138885982 -79151176 + L1PA8 LINE L1 5411 6162 -10 729 209 19 202 chr3 138885982 138886357 -79150801 + L1MC4 LINE L1 7600 8042 0 25 31 0 0 chr3 138886398 138886430 -79150728 + AT_rich Low_complexity Low_complexity 1 32 0 326 365 0 26 chr3 138886438 138886553 -79150605 - L1MC/D LINE L1 -2143 5665 5554 246 333 11 11 chr3 138886587 138886674 -79150484 + L2 LINE L2 3136 3222 -50 449 253 12 47 chr3 138886796 138886966 -79150192 + MLT1D LTR MaLR 16 179 -326 575 232 13 26 chr3 138887172 138887327 -79149831 - L1M3e LINE L1 -6875 155 3 467 242 209 0 chr3 138887461 138887614 -79149544 - MER5A DNA MER1_type -1 188 4 2552 64 3 13 chr3 138887662 138887976 -79149182 + AluY SINE Alu 1 311 0 2402 189 60 19 chr3 138887992 138888522 -79148636 + L1MB7 LINE L1 5628 6179 -5 272 217 0 43 chr3 138889313 138889382 -79147776 - L2 LINE L2 -22 3250 3185 257 314 0 41 chr3 138893659 138893780 -79143378 + G-rich Low_complexity Low_complexity 2 117 0 * 314 299 5 43 chr3 138893724 138893908 -79143250 + GA-rich Low_complexity Low_complexity 1 177 0 207 250 0 0 chr3 138893946 138894014 -79143144 + G-rich Low_complexity Low_complexity 3 70 0 10434 20 0 0 chr3 138894086 138895617 -79141541 + L1P1 LINE L1 4116 5646 -509 4482 30 0 73 chr3 138897552 138898282 -79138876 + L1PA2 LINE L1 5476 6152 -3 554 234 55 0 chr3 138898397 138898525 -79138633 - MIR SINE MIR -7 255 121 249 119 0 24 chr3 138899425 138899467 -79137691 + MIR SINE MIR 108 148 -60 428 246 66 25 chr3 138902365 138902487 -79134671 - MIR SINE MIR -98 164 38 419 258 81 35 chr3 138904525 138904723 -79132435 + MIR SINE MIR 21 227 -35 544 79 45 0 chr3 138905434 138905523 -79131635 - Tigger1 DNA MER2_type -124 2294 2202 * 619 154 123 0 chr3 138905521 138905651 -79131507 - Tigger1 DNA MER2_type -2271 147 2 942 220 136 19 chr3 138905654 138906022 -79131136 - Charlie2 DNA MER1_type -303 2559 2149 1079 246 170 56 chr3 138906061 138906251 -79130907 - Charlie2a DNA MER1_type -1219 1643 1476 2538 77 0 0 chr3 138906251 138906561 -79130597 + AluY SINE Alu 1 310 -1 1079 246 170 56 chr3 138906561 138907708 -79129450 - Charlie2a DNA MER1_type -1386 1476 93 193 322 0 58 chr3 138908349 138908436 -79128722 + MIR SINE MIR 111 192 -70 259 88 0 0 chr3 138908634 138908668 -79128490 - MER105 DNA DNA -55 149 116 620 212 65 69 chr3 138909952 138910169 -79126989 + MIR SINE MIR 31 246 -16 182 397 0 0 chr3 138910260 138910323 -79126835 - L2 LINE L2 -2 3270 3208 342 269 152 12 chr3 138910633 138910889 -79126269 - LTR33A LTR ERVL -163 360 69 838 173 0 0 chr3 138911233 138911360 -79125798 - FLAM_A SINE Alu -6 127 1 383 279 54 16 chr3 138911380 138911509 -79125649 - MIR SINE MIR -40 222 89 291 344 25 6 chr3 138913382 138913539 -79123619 - L1ME LINE L1 -400 5721 5562 276 263 88 29 chr3 138913790 138913927 -79123231 + MIR SINE MIR 63 207 -55 275 264 182 31 chr3 138914352 138914511 -79122647 + L2 LINE L2 2470 2652 -662 380 365 76 32 chr3 138914532 138914738 -79122420 - L1ME LINE L1 -2237 3909 3689 1717 144 18 7 chr3 138914738 138915015 -79122143 - AluJo SINE Alu -10 302 23 380 365 76 32 chr3 138915015 138915057 -79122101 - L1ME LINE L1 -2457 3689 3650 240 230 80 60 chr3 138915303 138915403 -79121755 + Charlie8 DNA MER1_type 11 112 -2305 242 271 112 19 chr3 138915542 138915649 -79121509 - MIR SINE MIR -72 190 74 1256 91 0 28 chr3 138915687 138915863 -79121295 - AluSp SINE Alu -6 307 137 316 281 7 89 chr3 138915926 138916061 -79121097 + L1MC4 LINE L1 6580 6703 -1339 439 232 96 28 chr3 138917099 138917276 -79119882 + MER46C DNA MER2_type 1 189 -149 1251 242 133 35 chr3 138917348 138917715 -79119443 + L1MD3 LINE L1 6636 7076 -919 2412 55 13 23 chr3 138917715 138918022 -79119136 + AluY SINE Alu 1 304 -7 1251 242 133 35 chr3 138918022 138918204 -79118954 + L1MD3 LINE L1 7076 7239 -756 1585 222 110 20 chr3 138918230 138918729 -79118429 + MER77 LTR ERV1 58 601 -4 652 283 130 8 chr3 138918782 138919277 -79117881 + L1MD3 LINE L1 7266 7914 -81 872 262 117 54 chr3 138919646 138920237 -79116921 + L1MC5 LINE L1 7068 7703 -258 2444 90 0 3 chr3 138920237 138920537 -79116621 - AluSx SINE Alu -13 299 1 872 262 117 54 chr3 138920537 138920579 -79116579 + L1MC5 LINE L1 7703 7741 -220 236 296 49 25 chr3 138922405 138922486 -79114672 - MIR SINE MIR -90 118 36 180 97 0 0 chr3 138922957 138922988 -79114170 + (TTAAA)n Simple_repeat Simple_repeat 1 31 0 346 304 50 40 chr3 138923257 138923419 -79113739 - MIR3 SINE MIR 0 208 45 252 293 49 73 chr3 138924483 138924606 -79112552 - MIR SINE MIR -122 140 21 253 294 71 0 chr3 138924961 138925046 -79112112 + L2 LINE L2 3141 3231 -41 2295 80 0 3 chr3 138925063 138925365 -79111793 - AluY SINE Alu -7 304 4 25 0 0 0 chr3 138925811 138925836 -79111322 + AT_rich Low_complexity Low_complexity 1 25 0 186 356 99 10 chr3 138926268 138926369 -79110789 + MIR SINE MIR 37 146 -116 1826 171 7 0 chr3 138927668 138927961 -79109197 + AluJo SINE Alu 1 295 -17 289 293 0 50 chr3 138928710 138928809 -79108349 - MIR3 SINE MIR -5 203 110 472 290 90 13 chr3 138929273 138929428 -79107730 + MIR SINE MIR 46 212 -50 677 262 79 15 chr3 138931010 138931212 -79105946 - MIR SINE MIR -46 216 2 301 338 142 5 chr3 138931213 138931417 -79105741 + L2 LINE L2 2154 2385 -929 342 311 49 41 chr3 138931839 138932042 -79105116 - MIR SINE MIR -38 224 21 2054 139 10 0 chr3 138932184 138932487 -79104671 + AluSx SINE Alu 1 306 -6 227 345 48 0 chr3 138932648 138932732 -79104426 - MIR SINE MIR -157 105 18 304 316 137 0 chr3 138933490 138933629 -79103529 + MIR SINE MIR 77 234 -28 944 206 165 4 chr3 138934481 138934729 -79102429 - MER106B DNA MER1_type -708 351 64 236 354 21 21 chr3 138934961 138935105 -79102053 + MER103 DNA DNA 22 165 -1 2565 36 0 0 chr3 138936063 138936364 -79100794 - AluY SINE Alu -10 301 1 31 58 0 0 chr3 138937371 138937423 -79099735 + GC_rich Low_complexity Low_complexity 1 52 0 28 71 0 0 chr3 138937482 138937538 -79099620 + GC_rich Low_complexity Low_complexity 1 56 0 27 73 0 0 chr3 138937668 138937723 -79099435 + GC_rich Low_complexity Low_complexity 1 55 0 32 75 0 0 chr3 138937749 138937816 -79099342 + GC_rich Low_complexity Low_complexity 1 67 0 390 82 0 94 chr3 138938069 138938228 -79098930 + (CGGGGG)n Simple_repeat Simple_repeat 1 144 0 284 307 63 47 chr3 138938975 138939350 -79097808 + L2 LINE L2 2793 3252 -61 1670 189 86 16 chr3 138939486 138940205 -79096953 + L1M4 LINE L1 4868 5634 -540 702 204 66 0 chr3 138940205 138940342 -79096816 - FAM SINE Alu -39 146 1 464 302 14 0 chr3 138940344 138940483 -79096675 - MLT1H1 LTR MaLR -414 141 1 288 95 0 0 chr3 138940483 138940525 -79096633 + MIR SINE MIR 108 149 -59 937 296 54 9 chr3 138940527 138940953 -79096205 + MER90 LTR ERV1 1 445 -130 375 297 156 9 chr3 138941560 138941772 -79095386 - Charlie8 DNA MER1_type -2146 271 29 1036 175 0 0 chr3 138941772 138941938 -79095220 + FRAM SINE Alu 1 166 -10 600 185 0 0 chr3 138942662 138942819 -79094339 + CT-rich Low_complexity Low_complexity 2 158 0 219 133 13 53 chr3 138942833 138942908 -79094250 + (TCTCTG)n Simple_repeat Simple_repeat 1 72 0 287 230 81 60 chr3 138942909 138943091 -79094067 + MLT1A2 LTR MaLR 206 370 -4 259 270 0 0 chr3 138943316 138943379 -79093779 - MLT1L LTR MaLR -531 84 22 731 200 0 0 chr3 138945893 138946013 -79091145 - FLAM_C SINE Alu -19 124 5 227 303 53 0 chr3 138947169 138947245 -79089913 + MIR SINE MIR 182 261 -1 * 317 316 26 0 chr3 138947221 138947335 -79089823 - MIR SINE MIR -41 221 105 326 211 56 11 chr3 138947479 138947569 -79089589 + MER5A DNA MER1_type 4 97 -92 683 159 40 8 chr3 138947596 138947722 -79089436 - FLAM_A SINE Alu -1 132 3 312 268 0 0 chr3 138947792 138947945 -79089213 + C-rich Low_complexity Low_complexity 1 153 0 316 296 111 0 chr3 138948116 138948251 -79088907 + HAL1 LINE L1 14 163 -2344 286 363 71 6 chr3 138948571 138948753 -79088405 + HAL1 LINE L1 642 835 -1672 209 330 44 22 chr3 138949452 138949543 -79087615 + MIR SINE MIR 47 139 -123 283 281 25 26 chr3 138950886 138951006 -79086152 + L1MCb LINE L1 103 540 -5882 355 198 177 0 chr3 138951312 138951408 -79085750 - MER81 DNA DNA -1 113 1 612 288 11 22 chr3 138951796 138951980 -79085178 - MIR SINE MIR -32 230 49 228 222 0 0 chr3 138951998 138952043 -79085115 - Tigger5 DNA MER2_type -5 2318 2274 341 152 0 15 chr3 138952057 138952123 -79085035 + Tigger5 DNA MER2_type 2253 2317 -6 1617 166 55 0 chr3 138952654 138952944 -79084214 + AluSx SINE Alu 1 306 -6 316 224 201 8 chr3 138953324 138953458 -79083700 + L2 LINE L2 2900 3059 -254 340 306 111 28 chr3 138954063 138954207 -79082951 - MIR SINE MIR -44 218 63 243 219 53 18 chr3 138955233 138955297 -79081861 - MIR SINE MIR -62 146 88 250 120 453 0 chr3 138955446 138955521 -79081637 + MER20 DNA MER1_type 39 147 -72 2079 161 102 29 chr3 138955547 138956026 -79081132 + L1MB3 LINE L1 5670 6183 0 408 317 38 8 chr3 138957202 138957353 -79079805 - MIR SINE MIR -55 153 3 2562 166 33 0 chr3 138957438 138958045 -79079113 - L1MB3 LINE L1 -2 6181 5501 200 315 14 14 chr3 138958586 138958659 -79078499 - L2 LINE L2 0 3313 3241 503 294 18 6 chr3 138958705 138958868 -79078290 - L2 LINE L2 -252 3061 2897 425 232 51 7 chr3 138958913 138959051 -79078107 - MER63 DNA MER1_type -12 1049 906 204 247 14 41 chr3 138962097 138962170 -79074988 - MIR SINE MIR -127 135 65 354 350 83 0 chr3 138962694 138962874 -79074284 - MIR SINE MIR -8 254 60 332 206 0 22 chr3 138964310 138964402 -79072756 + (TATATG)n Simple_repeat Simple_repeat 4 93 0 647 201 20 8 chr3 138964428 138965301 -79071857 + (TG)n Simple_repeat Simple_repeat 1 883 0 234 222 0 0 chr3 138966615 138966669 -79070489 + (TG)n Simple_repeat Simple_repeat 1 54 0 2244 160 67 7 chr3 138967647 138968053 -79069105 + MSTB1 LTR MaLR 1 430 -2 261 98 0 0 chr3 138968435 138968476 -79068682 + (GGGA)n Simple_repeat Simple_repeat 2 42 0 238 301 12 0 chr3 138969145 138969228 -79067930 + L1MC4a LINE L1 5679 5762 -400 307 254 144 25 chr3 138969320 138969438 -79067720 + L1MC4a LINE L1 5763 5894 -1914 2165 116 0 3 chr3 138969600 138969903 -79067255 + AluSq SINE Alu 2 303 -10 321 327 32 13 chr3 138969947 138970103 -79067055 + L1ME2 LINE L1 6006 6164 0 522 118 20 0 chr3 138972292 138972394 -79064764 + Charlie5 DNA MER1_type 2353 2456 -156 1140 125 0 17 chr3 138972394 138972570 -79064588 + AluJb SINE Alu 138 310 -2 267 168 137 0 chr3 138972570 138972665 -79064493 + Charlie5 DNA MER1_type 2486 2593 -19 492 215 59 0 chr3 138972681 138972816 -79064342 + L1MD3 LINE L1 7845 7987 -8 215 206 111 0 chr3 138973292 138973355 -79063803 - L2 LINE L2 -1 3312 3243 464 227 59 8 chr3 138973455 138973574 -79063584 + MER5A DNA MER1_type 61 185 -4 192 211 53 0 chr3 138974236 138974293 -79062865 + L2 LINE L2 3000 3059 -213 252 252 77 56 chr3 138974616 138974759 -79062399 + MER112 DNA MER1_type 100 245 -15 557 304 71 55 chr3 138975111 138975364 -79061794 - HAL1b LINE L1 -947 401 145 1757 145 21 3 chr3 138975746 138976028 -79061130 + AluJo SINE Alu 1 287 -25 695 195 0 0 chr3 138976185 138976313 -79060845 + MLT1D LTR MaLR 378 505 0 306 0 0 0 chr3 138976439 138976473 -79060685 + (TG)n Simple_repeat Simple_repeat 2 35 0 480 214 107 18 chr3 138976843 138976955 -79060203 + MIR SINE MIR 109 230 -32 184 333 39 13 chr3 138978087 138978165 -79058993 - MIR SINE MIR -66 196 117 247 278 181 23 chr3 138980587 138980720 -79056438 - MIR SINE MIR -70 192 39 401 216 24 64 chr3 138980938 138981063 -79056095 - MIR SINE MIR -110 152 33 2998 213 59 35 chr3 138981234 138982027 -79055131 + MER21B LTR ERV1 22 833 -30 191 222 74 0 chr3 138982140 138982194 -79054964 - L2 LINE L2 -31 3282 3225 307 242 44 22 chr3 138982509 138982600 -79054558 - Charlie8 DNA MER1_type -2263 154 62 518 243 92 0 chr3 138982607 138982759 -79054399 + L1MD2 LINE L1 6190 6355 -4 1932 115 54 0 chr3 138982801 138983097 -79054061 + AluSq SINE Alu 1 312 -1 846 225 41 18 chr3 138983129 138983347 -79053811 + MIR SINE MIR 40 262 0 189 231 220 22 chr3 138983518 138983609 -79053549 + L2 LINE L2 2804 2912 -402 465 221 52 20 chr3 138984020 138984200 -79052958 + MLT1H1 LTR MaLR 379 555 0 279 294 213 22 chr3 138984228 138984500 -79052658 + L2 LINE L2 2990 3313 0 360 248 61 15 chr3 138984923 138985121 -79052037 + MER113 DNA MER1_type? 20 226 -295 509 254 122 6 chr3 138985124 138985305 -79051853 - MIR SINE MIR -10 252 51 1098 173 15 20 chr3 138985344 138985541 -79051617 + L1PB4 LINE L1 5961 6156 0 351 0 0 0 chr3 138985774 138985813 -79051345 + (CA)n Simple_repeat Simple_repeat 2 40 0 237 219 31 16 chr3 138989172 138989236 -79047922 - L2 LINE L2 -56 3257 3193 631 250 13 48 chr3 138989666 138989894 -79047264 - MLT1K LTR MaLR -271 317 98 204 313 157 17 chr3 138990094 138990209 -79046949 - MIR3 SINE MIR -63 145 15 264 385 0 0 chr3 138990214 138990344 -79046814 - L2 LINE L2 -238 3034 2905 472 267 75 19 chr3 138991646 138991807 -79045351 + MIR SINE MIR 2 171 -91 239 338 0 21 chr3 138991875 138992020 -79045138 + CT-rich Low_complexity Low_complexity 4 145 0 190 216 0 148 chr3 138993273 138993344 -79043814 - L2 LINE L2 0 3313 3256 679 230 92 6 chr3 138993344 138993518 -79043640 + MER5A DNA MER1_type 1 189 0 7736 212 47 10 chr3 138993759 138996433 -79040725 - L1MB7 LINE L1 -252 5932 3165 198 0 0 0 chr3 138996612 138996634 -79040524 + (CAGA)n Simple_repeat Simple_repeat 2 23 0 310 247 54 0 chr3 138998805 138998898 -79038260 - L2 LINE L2 -41 3272 3175 389 36 18 0 chr3 138999103 138999158 -79038000 + (CA)n Simple_repeat Simple_repeat 1 56 0 399 378 104 6 chr3 138999161 138999518 -79037640 - L2 LINE L2 -4 3309 2918 219 338 42 42 chr3 138999724 138999866 -79037292 - MIR3 SINE MIR -24 184 43 356 304 119 0 chr3 139000002 139000170 -79036988 - MIR SINE MIR -33 229 42 427 278 62 14 chr3 139000212 139000356 -79036802 + MIR SINE MIR 11 161 -101 293 95 22 6 chr3 139001030 139001096 -79036062 - L1MB3 LINE L1 -275 5893 5825 230 244 12 35 chr3 139001318 139001404 -79035754 - L1MC5 LINE L1 -29 7932 7849 211 127 36 36 chr3 139001663 139001718 -79035440 + (CACAC)n Simple_repeat Simple_repeat 1 55 0 313 163 52 20 chr3 139001722 139001875 -79035283 + (CA)n Simple_repeat Simple_repeat 1 158 0 1840 246 76 31 chr3 139001981 139002655 -79034503 - L1MB7 LINE L1 -15 6169 5466 188 338 68 0 chr3 139003330 139003404 -79033754 - MIR SINE MIR -166 96 18 24 53 0 0 chr3 139003938 139003976 -79033182 + GC_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr3 139004182 139004212 -79032946 + GC_rich Low_complexity Low_complexity 1 30 0 254 271 0 14 chr3 139004375 139004445 -79032713 - MER5A DNA MER1_type -120 69 1 255 268 0 0 chr3 139005391 139005548 -79031610 + (TG)n Simple_repeat Simple_repeat 2 158 0 2694 143 7 28 chr3 139005751 139006185 -79030973 + MSTC LTR MaLR 1 425 -3 279 292 39 8 chr3 139007739 139007869 -79029289 - MLT1J LTR MaLR -270 241 108 817 301 55 24 chr3 139007905 139008141 -79029017 + LTR16C LTR ERVL 83 337 -154 1310 215 37 63 chr3 139008141 139008522 -79028636 + MLT1A2 LTR MaLR 1 371 -3 817 301 55 24 chr3 139008522 139008667 -79028491 + LTR16C LTR ERVL 337 476 -15 229 301 11 0 chr3 139009560 139009653 -79027505 + L1ME LINE L1 5676 5769 -393 1848 111 0 4 chr3 139009805 139010058 -79027100 - AluSx SINE Alu -60 252 1 426 270 98 46 chr3 139011057 139011342 -79025816 - L1MC4a LINE L1 -1884 5924 5625 314 253 35 11 chr3 139011351 139011438 -79025720 - MIR SINE MIR -74 188 100 210 193 18 18 chr3 139012841 139012898 -79024260 + (TG)n Simple_repeat Simple_repeat 1 57 0 188 167 0 0 chr3 139013615 139013651 -79023507 + MIR SINE MIR 108 143 -119 557 250 49 14 chr3 139013936 139014080 -79023078 - MIR SINE MIR -3 259 111 242 326 196 9 chr3 139015362 139015777 -79021381 - L1MD2 LINE L1 -184 6058 5599 1231 164 19 5 chr3 139015777 139015990 -79021168 - AluJb SINE Alu -11 301 86 2424 87 3 0 chr3 139016014 139016326 -79020832 - AluSq SINE Alu 0 313 1 825 241 82 15 chr3 139016663 139016858 -79020300 + MER3 DNA MER1_type 2 209 0 1713 116 17 34 chr3 139017202 139017494 -79019664 + MER1B DNA MER1_type 53 339 0 432 270 105 22 chr3 139018022 139018289 -79018869 + LTR16C LTR ERVL 188 476 -15 521 185 6 0 chr3 139018407 139018580 -79018578 + (CA)n Simple_repeat Simple_repeat 1 174 0 714 183 0 0 chr3 139018625 139018886 -79018272 + (CA)n Simple_repeat Simple_repeat 1 261 0 391 338 14 14 chr3 139019907 139020055 -79017103 - MIR SINE MIR -57 205 58 4586 241 48 32 chr3 139021156 139022480 -79014678 - L1M4 LINE L1 -1865 4517 3160 1992 155 7 0 chr3 139022480 139022790 -79014368 - AluSx SINE Alu 0 312 1 4586 241 48 32 chr3 139022790 139023073 -79014085 - L1M4 LINE L1 -3222 3160 2883 1706 141 4 14 chr3 139023190 139023466 -79013692 + AluSx SINE Alu 29 301 -11 1751 173 10 3 chr3 139024282 139024577 -79012581 - AluJo SINE Alu -15 297 1 1426 216 54 10 chr3 139024578 139025249 -79011909 - L1ME LINE L1 -492 5672 4974 6235 30 7 0 chr3 139025502 139026231 -79010927 + L1PA4 LINE L1 5422 6155 0 1749 219 147 16 chr3 139026595 139026694 -79010464 - L1ME LINE L1 -1192 4954 4869 2277 59 0 4 chr3 139026694 139026965 -79010193 + AluY SINE Alu 30 299 -12 1749 219 147 16 chr3 139026965 139027444 -79009714 - L1ME LINE L1 -1277 4869 4300 2471 237 33 31 chr3 139027460 139028211 -79008947 - L1ME LINE L1 -1931 4215 3463 623 93 69 5 chr3 139028214 139028316 -79008842 - MLT1B LTR MaLR -2 388 281 290 122 20 0 chr3 139028294 139028343 -79008815 - MLT1B LTR MaLR -28 362 313 * 1289 105 5 11 chr3 139028344 139028535 -79008623 + Tigger1 DNA MER2_type 1702 1891 -527 369 174 0 8 chr3 139028664 139028737 -79008421 - AluS SINE Alu -250 58 1 1541 241 39 23 chr3 139028741 139030027 -79007131 - L1M4 LINE L1 -3562 2820 1464 962 251 112 43 chr3 139030188 139030872 -79006286 - L1M4 LINE L1 -5509 771 5 * 977 183 32 16 chr3 139030858 139031044 -79006114 - L1MD1 LINE L1 -415 5827 5639 687 112 0 0 chr3 139031084 139031173 -79005985 - 5S rRNA rRNA -31 90 2 260 170 94 75 chr3 139031179 139031285 -79005873 - HAL1 LINE L1 -1424 1083 976 387 240 74 0 chr3 139031368 139031489 -79005669 + L1ME1 LINE L1 6029 6158 -8 * 1080 285 114 49 chr3 139031480 139032157 -79005001 - HAL1 LINE L1 -1667 840 120 * 2457 237 16 58 chr3 139032153 139032943 -79004215 + L1MB5 LINE L1 4472 5228 -918 1656 171 67 0 chr3 139033044 139033372 -79003786 + L1MB5 LINE L1 5817 6166 -8 575 158 105 0 chr3 139033404 139033518 -79003640 + L1MC4 LINE L1 6867 6992 -1050 983 239 80 8 chr3 139033528 139033779 -79003379 + L1ME1 LINE L1 5801 6069 -97 241 194 176 46 chr3 139033872 139033980 -79003178 + MER102b DNA MER1_type 180 301 -40 370 211 56 94 chr3 139037393 139037573 -78999585 - LTR33 LTR ERVL -348 173 1 226 317 126 6 chr3 139038037 139038204 -78998954 - HAL1 LINE L1 -204 2303 2117 272 258 31 10 chr3 139038255 139038352 -78998806 - HAL1 LINE L1 -1803 704 606 248 285 124 22 chr3 139038571 139038708 -78998450 - HAL1 LINE L1 -2344 163 13 233 146 37 12 chr3 139038900 139038982 -78998176 + (CA)n Simple_repeat Simple_repeat 2 85 0 553 58 79 31 chr3 139038993 139039342 -78997816 + (CA)n Simple_repeat Simple_repeat 1 365 0 182 107 80 13 chr3 139039365 139039440 -78997718 + (CA)n Simple_repeat Simple_repeat 1 80 0 509 77 77 18 chr3 139039464 139039633 -78997525 + (CA)n Simple_repeat Simple_repeat 1 179 0 255 79 69 40 chr3 139039718 139039819 -78997339 + (CA)n Simple_repeat Simple_repeat 2 105 0 1666 178 10 20 chr3 139041363 139041656 -78995502 + AluJo SINE Alu 1 290 -22 2479 235 56 47 chr3 139041662 139042767 -78994391 - L1ME1 LINE L1 -9 6157 5033 2252 138 21 0 chr3 139042768 139043102 -78994056 - Tigger1 DNA MER2_type 0 2418 2078 37779 64 13 9 chr3 139043120 139048884 -78988274 - L1PA5 LINE L1 -12 6142 359 5522 152 25 15 chr3 139048886 139049648 -78987510 - Tigger1 DNA MER2_type -324 2094 1341 459 0 0 0 chr3 139049648 139049699 -78987459 + (TA)n Simple_repeat Simple_repeat 1 51 0 2348 108 0 0 chr3 139049699 139050004 -78987154 - AluSx SINE Alu -7 305 1 5522 152 25 15 chr3 139050004 139050217 -78986941 - Tigger1 DNA MER2_type -1076 1342 1109 2300 88 173 10 chr3 139050394 139050780 -78986378 - MER4C LTR ERV1 -11 454 6 938 137 7 7 chr3 139050780 139050926 -78986232 + MER4B LTR ERV1 1 146 -464 3588 151 53 41 chr3 139050927 139051630 -78985528 - MER50 LTR ERV1 -23 711 1 2116 114 107 59 chr3 139051631 139052074 -78985084 + MER4B LTR ERV1 144 903 0 276 131 117 138 chr3 139052093 139052168 -78984990 - MER113 DNA MER1_type? -377 144 72 2389 91 3 0 chr3 139052168 139052466 -78984692 + AluSp SINE Alu 1 299 -14 276 131 117 138 chr3 139052466 139052535 -78984623 - MER113 DNA MER1_type? -449 72 3 5508 211 52 30 chr3 139052650 139053622 -78983536 + L1ME LINE L1 3889 4919 -1247 2539 63 0 3 chr3 139053622 139053925 -78983233 - AluY SINE Alu -9 302 1 5508 211 52 30 chr3 139053925 139054548 -78982610 + L1ME LINE L1 4919 5527 -639 1656 98 0 0 chr3 139054550 139054755 -78982403 - AluSg SINE Alu -105 205 1 494 289 0 0 chr3 139054960 139055088 -78982070 - L2 LINE L2 -9 3263 3136 318 304 39 0 chr3 139055329 139055431 -78981727 + MIR SINE MIR 51 156 -106 431 197 71 16 chr3 139055872 139055999 -78981159 - MER20 DNA MER1_type -54 165 32 263 235 64 0 chr3 139056508 139056662 -78980496 + MIR SINE MIR 24 136 -72 444 246 135 42 chr3 139057266 139057481 -78979677 + MIR SINE MIR 28 262 0 237 268 50 100 chr3 139057845 139058106 -78979052 + L1MCc LINE L1 34 281 -6142 266 301 25 61 chr3 139058484 139058647 -78978511 + L1MCc LINE L1 1132 1288 -5135 1225 293 62 47 chr3 139058786 139059703 -78977455 + L1MCc LINE L1 1512 2442 -4680 361 138 0 0 chr3 139061581 139061639 -78975519 - L1P LINE L1 -5730 416 359 11673 108 25 26 chr3 139061641 139062420 -78974738 - Tigger1 DNA MER2_type -324 2094 1315 2356 110 0 0 chr3 139062420 139062728 -78974430 - AluSx SINE Alu -4 308 1 11673 108 25 26 chr3 139062728 139063166 -78973992 - Tigger1 DNA MER2_type -1103 1315 878 2555 60 3 0 chr3 139063166 139063468 -78973690 - AluY SINE Alu -8 303 1 11673 108 25 26 chr3 139063468 139064032 -78973126 - Tigger1 DNA MER2_type -1540 878 315 2665 214 94 34 chr3 139064605 139065529 -78971629 + L1MDb LINE L1 799 1750 -4656 2152 122 0 3 chr3 139065529 139065817 -78971341 + AluSx SINE Alu 1 287 -25 2665 214 94 34 chr3 139065817 139065907 -78971251 + L1MDb LINE L1 1750 1833 -4573 2372 261 91 40 chr3 139065936 139066220 -78970938 - L1M4 LINE L1 -1538 4608 4340 2484 89 0 0 chr3 139066220 139066522 -78970636 + AluSg SINE Alu 4 305 -5 2372 261 91 40 chr3 139066522 139067463 -78969695 - L1M4 LINE L1 -1806 4340 3320 1392 171 104 71 chr3 139067482 139067848 -78969310 - L1MC3 LINE L1 -20 7765 7384 2473 77 3 10 chr3 139067848 139068161 -78968997 - AluY SINE Alu 0 311 1 1392 171 104 71 chr3 139068161 139068187 -78968971 - L1MC3 LINE L1 -401 7384 7360 3414 157 101 5 chr3 139068190 139068847 -78968311 + L1MB4 LINE L1 5411 6130 -50 692 192 8 19 chr3 139069000 139069250 -78967908 + CT-rich Low_complexity Low_complexity 1 247 0 614 193 35 0 chr3 139069262 139069376 -78967782 - LTR52-int LTR ERVL -2587 969 852 2518 230 37 11 chr3 139069405 139070029 -78967129 - LTR52-int LTR ERVL -2884 672 3 575 207 29 14 chr3 139070045 139070185 -78966973 - LTR52 LTR ERVL -19 402 261 607 94 113 0 chr3 139070272 139070378 -78966780 - LTR52 LTR ERVL -303 118 1 725 149 209 0 chr3 139070403 139070537 -78966621 - FRAM SINE Alu -14 162 1 640 190 199 0 chr3 139070553 139070779 -78966379 - L1MCb LINE L1 -4008 2556 2286 4008 186 58 10 chr3 139070779 139071718 -78965440 - L1MCb LINE L1 -4741 1823 836 503 237 77 73 chr3 139071696 139071983 -78965175 - L1MEc LINE L1 -5046 1699 1412 * 569 269 76 65 chr3 139072251 139072541 -78964617 + MER68 LTR ERV1 240 532 -30 973 291 80 64 chr3 139072569 139073575 -78963583 - L1MEc LINE L1 -5340 1056 35 437 212 68 42 chr3 139073973 139074091 -78963067 + MER110 LTR ERV1 350 470 -21 1828 241 39 40 chr3 139074381 139074924 -78962234 - MLT1F LTR MaLR 0 542 1 335 280 131 14 chr3 139075430 139075644 -78961514 - L1M4 LINE L1 -3377 2769 2531 24 0 0 0 chr3 139076228 139076252 -78960906 + AT_rich Low_complexity Low_complexity 1 24 0 2106 133 0 0 chr3 139077911 139078219 -78958939 + AluSx SINE Alu 1 308 0 764 125 0 0 chr3 139080688 139080792 -78956366 + FLAM_A SINE Alu 24 127 -15 1841 143 4 4 chr3 139081857 139082167 -78954991 - AluJb SINE Alu 0 314 5 549 92 92 0 chr3 139082303 139082410 -78954748 - AluY SINE Alu 0 314 201 304 315 70 46 chr3 139082556 139082858 -78954300 - L1M4 LINE L1 -1098 5048 4740 809 215 61 47 chr3 139082994 139083273 -78953885 - HAL1 LINE L1 -112 2395 2113 343 220 11 0 chr3 139083273 139083364 -78953794 + L1M4 LINE L1 4922 5013 -1133 3611 125 80 13 chr3 139083400 139084016 -78953142 + Tigger3b DNA MER2_type 5 661 -570 295 322 54 23 chr3 139085507 139085808 -78951350 + ERVL LTR ERVL 4740 5071 -693 250 335 19 7 chr3 139087338 139087493 -78949665 + L1MC4 LINE L1 7423 7579 -463 * 7251 144 19 14 chr3 139087487 139089704 -78947454 + L1MA5 LINE L1 4067 6300 0 444 251 78 114 chr3 139089706 139089850 -78947308 + L1MC4 LINE L1 7560 7708 -334 2518 66 0 0 chr3 139089850 139090153 -78947005 + AluY SINE Alu 1 303 -8 444 251 78 114 chr3 139090153 139090509 -78946649 + L1MC4 LINE L1 7708 8042 0 279 397 0 26 chr3 139091003 139091154 -78946004 - MIR3 SINE MIR -15 193 47 185 292 21 0 chr3 139091381 139091429 -78945729 + L2 LINE L2 3253 3301 -12 539 268 32 6 chr3 139092397 139092554 -78944604 + L1ME2 LINE L1 3268 3428 -2718 2173 159 40 16 chr3 139092574 139093008 -78944150 + MLT1B LTR MaLR 4 465 -2 2524 237 33 31 chr3 139093011 139093762 -78943396 + L1ME2 LINE L1 3463 4215 -1931 1792 219 147 16 chr3 139093778 139094257 -78942901 + L1ME2 LINE L1 4300 4869 -1277 2253 59 0 4 chr3 139094257 139094528 -78942630 - AluY SINE Alu -12 299 30 1792 219 147 16 chr3 139094528 139094627 -78942531 + L1ME2 LINE L1 4869 4954 -1192 6509 30 7 0 chr3 139094993 139095721 -78941437 - L1PA4 LINE L1 -1 6154 5422 3262 209 66 25 chr3 139095981 139096646 -78940512 + L1ME2 LINE L1 4980 5710 -454 1567 194 11 0 chr3 139096646 139096925 -78940233 + AluJo SINE Alu 1 282 -30 3262 209 66 25 chr3 139096925 139097400 -78939758 + L1ME2 LINE L1 5710 6164 0 2210 274 76 41 chr3 139097391 139098641 -78938517 + L1M4 LINE L1 3328 4621 -1525 * 1188 304 165 28 chr3 139099454 139100523 -78936635 - L2 LINE L2 -745 2569 1355 347 229 49 112 chr3 139100977 139101182 -78935976 - MER112 DNA MER1_type -67 193 2 2000 125 0 11 chr3 139102240 139102520 -78934638 + AluSg SINE Alu 27 303 -7 26 0 0 0 chr3 139103049 139103075 -78934083 + AT_rich Low_complexity Low_complexity 1 26 0 211 276 124 48 chr3 139105115 139105260 -78931898 + MER5A DNA MER1_type 19 174 -15 192 297 22 44 chr3 139105195 139105286 -78931872 - MER5A DNA MER1_type -98 91 3 * 288 253 57 67 chr3 139105365 139105559 -78931599 - L1M4 LINE L1 -1448 4698 4507 328 202 30 0 chr3 139105682 139105781 -78931377 + (CATA)n Simple_repeat Simple_repeat 3 104 0 1384 191 0 24 chr3 139105787 139106038 -78931120 - AluJo SINE Alu -30 282 38 317 302 85 68 chr3 139106045 139106293 -78930865 - L1M4 LINE L1 -1862 4284 4033 1599 87 60 5 chr3 139106654 139106872 -78930286 - MER30 DNA MER1_type 0 230 1 321 316 22 29 chr3 139107096 139107232 -78929926 - L1M4 LINE L1 -2828 3318 3184 2154 99 7 3 chr3 139107771 139108055 -78929103 - AluY SINE Alu 0 311 27 2094 125 0 13 chr3 139108335 139108640 -78928518 + AluSx SINE Alu 1 301 -11 1868 140 0 75 chr3 139109456 139109777 -78927381 - AluJo SINE Alu -15 297 1 180 331 85 39 chr3 139110101 139110231 -78926927 + MER5B DNA MER1_type 29 164 -14 2208 156 85 33 chr3 139110384 139110807 -78926351 + MER65A LTR ERV1 1 445 0 210 300 0 0 chr3 139110973 139111023 -78926135 + L2 LINE L2 3006 3055 -258 207 229 0 42 chr3 139111443 139111491 -78925667 + L2 LINE L2 3264 3309 -4 804 289 184 2 chr3 139112439 139112868 -78924290 - LTR33 LTR ERVL -14 507 1 532 159 212 26 chr3 139113288 139113401 -78923757 - AluJo SINE Alu -177 135 2 233 111 89 0 chr3 139113442 139113487 -78923671 + MIR SINE MIR 160 208 -54 22 56 0 0 chr3 139115152 139115188 -78921970 + AT_rich Low_complexity Low_complexity 1 36 0 221 393 37 0 chr3 139116288 139116395 -78920763 + L2 LINE L2 3200 3310 -3 280 336 112 5 chr3 139116991 139117205 -78919953 + L2 LINE L2 2139 2375 -939 1085 139 0 60 chr3 139117205 139117406 -78919752 + AluJo SINE Alu 101 289 -23 4290 216 40 16 chr3 139117406 139118442 -78918716 + L1MB3 LINE L1 4120 5180 -966 912 141 7 0 chr3 139118449 139118584 -78918574 + FAM SINE Alu 34 169 -16 5420 163 8 13 chr3 139118585 139119595 -78917563 + L1MB3 LINE L1 5177 6182 -1 1893 153 3 0 chr3 139119918 139120213 -78916945 + AluJb SINE Alu 1 296 -16 389 345 160 32 chr3 139120639 139121039 -78916119 + L3 LINE CR1 1033 1483 -94 253 200 100 50 chr3 139121094 139121174 -78915984 - L2 LINE L2 -31 3282 3199 1269 267 94 44 chr3 139121199 139121578 -78915580 + L1ME3A LINE L1 4789 5147 -1023 3073 106 31 0 chr3 139121578 139121993 -78915165 - MSTA LTR MaLR 0 428 1 1269 267 94 44 chr3 139121993 139122044 -78915114 + L1ME3A LINE L1 5147 5194 -976 4501 173 62 10 chr3 139122044 139122866 -78914292 + MER6 DNA MER2_type 1 865 0 1269 267 94 44 chr3 139122866 139123539 -78913619 + L1ME3A LINE L1 5194 5947 -223 29 84 0 0 chr3 139124210 139124281 -78912877 + GC_rich Low_complexity Low_complexity 1 71 0 324 300 71 105 chr3 139124296 139124772 -78912386 + L1M2 LINE L1 756 1215 -5634 1453 62 0 0 chr3 139125202 139125381 -78911777 + AluY SINE Alu 133 311 0 261 317 37 0 chr3 139125520 139125602 -78911556 - L2 LINE L2 -26 3287 3203 370 229 132 28 chr3 139127329 139127473 -78909685 + MIR3 SINE MIR 1 159 -49 343 303 77 46 chr3 139127813 139128157 -78909001 - L2 LINE L2 -257 3056 2702 2138 109 3 10 chr3 139128554 139128847 -78908311 + AluY SINE Alu 1 291 -20 1566 133 68 4 chr3 139128883 139129132 -78908026 + AluSx SINE Alu 44 308 -4 329 135 0 0 chr3 139129144 139129196 -78907962 + FRAM SINE Alu 63 114 -52 969 193 0 88 chr3 139129196 139129435 -78907723 + AluJo SINE Alu 85 302 -10 204 364 7 45 chr3 139129777 139129931 -78907227 + MIR3 SINE MIR 48 195 -13 231 317 0 0 chr3 139131026 139131086 -78906072 - L2 LINE L2 -4 3268 3209 182 222 89 67 chr3 139132047 139132137 -78905021 + MIR3 SINE MIR 91 182 -26 250 300 133 13 chr3 139132201 139132351 -78904807 - MER5A DNA MER1_type 0 189 22 208 0 30 30 chr3 139134660 139134693 -78902465 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 209 294 20 0 chr3 139135128 139135179 -78901979 - L2 LINE L2 -21 3292 3241 * 421 331 105 16 chr3 139135159 139135407 -78901751 + L3 LINE CR1 854 1123 -454 521 308 26 6 chr3 139136146 139136302 -78900856 - MIR SINE MIR -65 197 39 373 297 95 0 chr3 139137273 139137421 -78899737 - MIR3 SINE MIR -11 197 36 185 349 60 12 chr3 139138019 139138102 -78899056 - L2 LINE L2 -338 2976 2890 1899 179 10 3 chr3 139139105 139139413 -78897745 - AluJo SINE Alu -2 310 1 249 287 61 22 chr3 139139417 139139647 -78897511 - L1M4 LINE L1 -2855 3291 3053 1567 231 94 66 chr3 139139682 139139742 -78897416 - HAL1b LINE L1 -7 1341 1284 1908 109 4 19 chr3 139139742 139140008 -78897150 + AluSx SINE Alu 39 300 -12 1567 231 94 66 chr3 139140008 139140850 -78896308 - HAL1b LINE L1 -64 1284 414 1003 241 27 0 chr3 139140872 139141096 -78896062 - MLT1F1 LTR MaLR 0 567 338 583 250 14 73 chr3 139141150 139141370 -78895788 - MLT1F1 LTR MaLR -360 207 1 365 263 132 26 chr3 139141452 139141604 -78895554 - HAL1b LINE L1 -1087 261 94 511 306 148 0 chr3 139143281 139143477 -78893681 + MIR SINE MIR 20 244 -18 470 279 46 76 chr3 139143496 139143693 -78893465 - MIR SINE MIR -71 191 1 287 221 34 74 chr3 139143749 139143898 -78893260 - L1M4 LINE L1 -3089 3057 2915 390 306 119 58 chr3 139143939 139144351 -78892807 - L1M4 LINE L1 -3235 2911 2475 612 303 55 46 chr3 139144516 139144949 -78892209 + MLT1K LTR MaLR 150 586 -2 572 297 66 31 chr3 139144950 139145206 -78891952 - L1M4 LINE L1 -3663 2483 2219 847 138 32 32 chr3 139145352 139145540 -78891618 + L1MB8 LINE L1 5991 6178 0 249 233 0 29 chr3 139145540 139145633 -78891525 + HAL1 LINE L1 993 1084 -1423 342 67 0 0 chr3 139145641 139145686 -78891472 + (TG)n Simple_repeat Simple_repeat 2 46 0 248 262 0 0 chr3 139145756 139145817 -78891341 + (TA)n Simple_repeat Simple_repeat 2 62 0 975 275 111 17 chr3 139145820 139146417 -78890741 + HAL1 LINE L1 1131 1783 -724 937 253 215 15 chr3 139146750 139147205 -78889953 - MLT1H LTR MaLR -1 548 3 1754 212 13 0 chr3 139147271 139147577 -78889581 - AluJo SINE Alu -2 310 1 343 228 80 74 chr3 139149464 139149626 -78887532 - MIR SINE MIR -48 214 52 504 122 0 27 chr3 139150649 139150763 -78886395 - L1MC1 LINE L1 -155 6011 5904 555 228 0 9 chr3 139152009 139152123 -78885035 + MIR SINE MIR 36 148 -114 3751 142 21 15 chr3 139152189 139152803 -78884355 - LTR31 LTR ERV1 0 619 2 634 224 15 0 chr3 139152840 139152974 -78884184 - MIR SINE MIR -23 239 104 256 161 32 0 chr3 139152975 139153037 -78884121 + (TA)n Simple_repeat Simple_repeat 2 65 0 15081 91 16 22 chr3 139153140 139155411 -78881747 - L1P LINE L1 -3529 2617 359 1458 121 40 4 chr3 139155413 139155661 -78881497 - Tigger1 DNA MER2_type -324 2094 1838 254 378 0 9 chr3 139155800 139155911 -78881247 + G-rich Low_complexity Low_complexity 5 114 0 375 248 0 0 chr3 139155938 139156043 -78881115 + G-rich Low_complexity Low_complexity 1 105 0 286 385 0 19 chr3 139156046 139156202 -78880956 + GA-rich Low_complexity Low_complexity 4 156 0 * 490 361 0 17 chr3 139156173 139156402 -78880756 + G-rich Low_complexity Low_complexity 1 225 0 1515 87 60 5 chr3 139156763 139156981 -78880177 - MER30 DNA MER1_type 0 230 1 345 153 0 0 chr3 139157788 139157860 -78879298 + (TG)n Simple_repeat Simple_repeat 2 73 0 342 0 0 0 chr3 139158184 139158222 -78878936 + (A)n Simple_repeat Simple_repeat 1 38 0 228 245 0 59 chr3 139158425 139158527 -78878631 + (CA)n Simple_repeat Simple_repeat 1 96 0 246 164 219 0 chr3 139158545 139158618 -78878540 - LTR33 LTR ERVL -12 509 421 4287 171 27 5 chr3 139158872 139159661 -78877497 + MSTB1-int LTR MaLR 846 1651 0 2447 122 46 55 chr3 139159661 139159944 -78877214 + MSTB1 LTR MaLR 1 281 -151 2073 117 0 37 chr3 139159944 139160286 -78876872 + AluSc SINE Alu 1 331 0 2447 122 46 55 chr3 139160286 139160437 -78876721 + MSTB1 LTR MaLR 281 432 0 184 247 74 123 chr3 139160488 139160650 -78876508 + L2 LINE L2 2702 2855 -459 1987 150 75 0 chr3 139160845 139161204 -78875954 - MSTB LTR MaLR 0 426 41 8453 163 18 13 chr3 139161231 139161585 -78875573 - L1PB1 LINE L1 -1 6150 5799 450 36 0 0 chr3 139161585 139161641 -78875517 + (TA)n Simple_repeat Simple_repeat 2 57 0 8453 163 18 13 chr3 139161641 139163017 -78874141 - L1PB1 LINE L1 -352 5799 4409 2235 104 7 7 chr3 139163017 139163314 -78873844 - AluSc SINE Alu -12 297 1 8453 163 18 13 chr3 139163314 139164239 -78872919 - L1PB1 LINE L1 -1742 4409 3490 6201 180 23 5 chr3 139164236 139165717 -78871441 + L1PB1 LINE L1 2623 4187 -2675 * 374 150 0 0 chr3 139165717 139165777 -78871381 - MSTB LTR MaLR -366 60 1 1533 228 137 86 chr3 139165823 139166559 -78870599 + MER21B LTR ERV1 3 776 -87 204 239 90 0 chr3 139166867 139166934 -78870224 - MIR3 SINE MIR -49 159 87 3186 178 31 0 chr3 139167108 139167647 -78869511 + MER41D LTR ERV1 1 556 -1 250 268 61 0 chr3 139168044 139168126 -78869032 + MLT1J LTR MaLR 101 187 -324 890 143 127 48 chr3 139168357 139168485 -78868673 - AluJo SINE Alu -30 282 133 5397 131 23 21 chr3 139168485 139169839 -78867319 - L1PA16 LINE L1 -1 6165 4785 890 143 127 48 chr3 139169839 139169899 -78867259 - AluJo SINE Alu -179 133 79 427 279 29 0 chr3 139169900 139170040 -78867118 - L1ME3 LINE L1 -31 6131 5988 1349 222 121 11 chr3 139170049 139170236 -78866922 - L1M4 LINE L1 -1670 4476 4311 249 33 0 0 chr3 139170236 139170266 -78866892 + (TG)n Simple_repeat Simple_repeat 1 30 0 1349 222 121 11 chr3 139170266 139170457 -78866701 - L1M4 LINE L1 -1835 4311 4056 2172 115 28 0 chr3 139170467 139170754 -78866404 - AluSx SINE Alu -17 295 1 1064 253 159 51 chr3 139171186 139171542 -78865616 - L1MC4 LINE L1 0 8042 7726 1912 154 3 31 chr3 139171542 139171861 -78865297 - AluJb SINE Alu -2 310 1 1064 253 159 51 chr3 139171861 139172188 -78864970 - L1MC4 LINE L1 -316 7726 7285 350 182 0 0 chr3 139172342 139172397 -78864761 + Alu SINE Alu 1 55 -245 593 287 16 62 chr3 139172411 139172732 -78864426 - L1MC4 LINE L1 -775 7267 6962 289 227 120 0 chr3 139173012 139173087 -78864071 + MIR SINE MIR 103 186 -76 1526 166 58 18 chr3 139173259 139173537 -78863621 + AluJo SINE Alu 1 289 -23 2124 127 56 64 chr3 139173544 139173685 -78863473 - L1MA9 LINE L1 -22 6290 6149 2099 129 7 13 chr3 139173685 139173988 -78863170 - AluSx SINE Alu -11 301 1 2124 127 56 64 chr3 139173988 139174408 -78862750 - L1MA9 LINE L1 -163 6149 5642 1689 173 63 53 chr3 139174408 139174802 -78862356 - MER57A LTR ERV1 0 403 6 4787 175 33 21 chr3 139174805 139176091 -78861067 - L1MA9 LINE L1 -672 5640 4340 2464 204 62 15 chr3 139176090 139176771 -78860387 + L1 LINE L1 2815 3527 -2619 * 335 199 57 121 chr3 139176778 139176919 -78860239 + LTR16A1 LTR ERVL 312 443 -14 247 326 47 16 chr3 139177384 139177513 -78859645 + L2 LINE L2 2725 2857 -457 241 314 15 44 chr3 139177755 139177892 -78859266 + L2 LINE L2 3139 3271 -1 216 231 25 50 chr3 139178361 139178482 -78858676 + (CGGGG)n Simple_repeat Simple_repeat 1 118 0 659 307 143 20 chr3 139178977 139179368 -78857790 + L2 LINE L2 2827 3265 -48 545 227 153 20 chr3 139179365 139179590 -78857568 - MIR SINE MIR 0 262 8 * 239 210 111 54 chr3 139179756 139179840 -78857318 + MIR SINE MIR 64 153 -55 197 220 40 0 chr3 139180307 139180357 -78856801 - MIR SINE MIR -123 139 88 304 275 107 0 chr3 139180522 139180630 -78856528 - MIR3 SINE MIR -21 187 63 2139 122 17 0 chr3 139180986 139181281 -78855877 + AluSx SINE Alu 1 300 -12 249 321 41 100 chr3 139181871 139182142 -78855016 - L2 LINE L2 -10 3262 3008 417 273 191 6 chr3 139182166 139182349 -78854809 - MIR SINE MIR -26 236 20 737 161 73 0 chr3 139182545 139182669 -78854489 + FLAM_A SINE Alu 1 133 0 669 186 110 42 chr3 139182669 139182899 -78854259 - L1MB8 LINE L1 -6 6172 5924 1106 138 31 0 chr3 139182928 139183123 -78854035 + MER2 DNA MER2_type 15 215 -130 2693 181 28 41 chr3 139183233 139183874 -78853284 - L1MB8 LINE L1 -286 5898 5266 708 175 8 0 chr3 139183878 139183998 -78853160 - MER2 DNA MER2_type -224 121 1 695 204 7 14 chr3 139184000 139184142 -78853016 - MER58A DNA MER1_type 0 141 1 3549 223 42 10 chr3 139184185 139185074 -78852084 - L1MB8 LINE L1 -1235 4911 3995 199 283 0 33 chr3 139185866 139185926 -78851232 - L2 LINE L2 -5 3308 3251 253 296 204 37 chr3 139186749 139187019 -78850139 + L2 LINE L2 2214 2528 -786 278 266 138 0 chr3 139187666 139187760 -78849398 + L2 LINE L2 3202 3308 -5 1988 68 0 0 chr3 139187868 139188102 -78849056 + AluY SINE Alu 74 307 -4 24 0 0 0 chr3 139188268 139188292 -78848866 + AT_rich Low_complexity Low_complexity 1 24 0 187 269 0 19 chr3 139188719 139188771 -78848387 + L2 LINE L2 3221 3271 -1 * 269 311 118 17 chr3 139188767 139188886 -78848272 + MIR SINE MIR 34 164 -98 226 134 51 0 chr3 139189281 139189326 -78847832 + MIR SINE MIR 102 147 -65 187 285 133 86 chr3 139190207 139190604 -78846554 + L2 LINE L2 2842 3257 -15 302 280 124 56 chr3 139190605 139190855 -78846303 - L2 LINE L2 0 3313 3047 296 323 57 15 chr3 139191048 139191212 -78845946 + MIR SINE MIR 2 172 -36 818 152 8 0 chr3 139191495 139191620 -78845538 + FLAM_A SINE Alu 9 134 -8 278 246 154 45 chr3 139192067 139192177 -78844981 - MIR3 SINE MIR -8 200 79 243 206 79 32 chr3 139192175 139192238 -78844920 + MIR SINE MIR 197 262 0 * 671 265 32 21 chr3 139192346 139192535 -78844623 - MIR SINE MIR -41 221 31 239 313 0 12 chr3 139192582 139192665 -78844493 - MIR SINE MIR -117 145 64 348 349 62 30 chr3 139193045 139193456 -78843702 + L2 LINE L2 2723 3141 -172 242 284 30 75 chr3 139193650 139193784 -78843374 + L2 LINE L2 3166 3293 -20 2371 102 0 3 chr3 139193878 139194181 -78842977 - AluSq SINE Alu -11 302 1 310 214 122 99 chr3 139194446 139194577 -78842581 + MER63 DNA MER1_type 1 760 -302 2594 206 70 29 chr3 139195566 139196158 -78841000 - L1MB8 LINE L1 -1 6177 5611 1616 201 10 30 chr3 139196158 139196462 -78840696 - AluJo SINE Alu -14 298 1 2594 206 70 29 chr3 139196462 139197156 -78840002 - L1MB8 LINE L1 -567 5611 4799 180 0 0 0 chr3 139197230 139197250 -78839908 + (TTA)n Simple_repeat Simple_repeat 1 20 0 269 324 14 33 chr3 139197617 139197830 -78839328 - L1MC/D LINE L1 -1979 5829 5621 234 156 0 22 chr3 139197888 139197933 -78839225 + L2 LINE L2 3265 3308 -5 15199 129 35 5 chr3 139198267 139200614 -78836544 - Tigger1 DNA MER2_type -2 2416 1 192 260 60 0 chr3 139204763 139204813 -78832345 - MIR SINE MIR -87 175 123 1748 133 48 7 chr3 139204856 139205127 -78832031 + AluJo SINE Alu 30 311 -1 431 268 183 28 chr3 139205357 139205570 -78831588 + MIR SINE MIR 7 252 -10 1774 190 0 13 chr3 139205793 139206109 -78831049 + AluJo SINE Alu 1 312 0 320 246 85 113 chr3 139206167 139206687 -78830471 - L1ME4a LINE L1 -17 6104 5600 327 275 113 28 chr3 139207375 139207517 -78829641 + MIR3 SINE MIR 34 187 -21 704 317 58 3 chr3 139207877 139208189 -78828969 - MLT1L LTR MaLR -115 500 172 187 250 143 60 chr3 139208546 139208630 -78828528 - L2 LINE L2 -46 3226 3136 189 313 48 41 chr3 139208919 139209066 -78828092 - L2 LINE L2 -570 2744 2597 2192 107 7 10 chr3 139211614 139211914 -78825244 + AluSx SINE Alu 1 299 -13 261 0 0 0 chr3 139211966 139211995 -78825163 + (TA)n Simple_repeat Simple_repeat 1 29 0 489 308 111 63 chr3 139212009 139212422 -78824736 - L2 LINE L2 -13 3259 2827 309 197 0 16 chr3 139212774 139212835 -78824323 - MER2 DNA MER2_type 0 345 286 461 222 0 0 chr3 139212860 139212941 -78824217 - MER2 DNA MER2_type -247 98 18 853 196 65 0 chr3 139213834 139214018 -78823140 - MER58C DNA MER1_type 0 215 20 1090 293 109 18 chr3 139214269 139214936 -78822222 - L1MCc LINE L1 -4852 1570 850 214 290 0 29 chr3 139215594 139215663 -78821495 + MIR SINE MIR 148 214 -48 518 252 21 19 chr3 139216159 139216314 -78820844 + MER5A DNA MER1_type 4 167 -18 2457 175 41 2 chr3 139217044 139217456 -78819702 + MSTC LTR MaLR 1 428 0 487 253 95 67 chr3 139219106 139219265 -78817893 - MLT1J LTR MaLR 0 511 358 1678 108 18 0 chr3 139219265 139219488 -78817670 - AluSg/x SINE Alu -14 298 72 487 253 95 67 chr3 139219488 139219790 -78817368 - MLT1J LTR MaLR -153 358 37 415 285 136 32 chr3 139219827 139220048 -78817110 + MIR SINE MIR 6 249 -13 373 301 73 22 chr3 139221915 139222051 -78815107 + MIR SINE MIR 110 252 -10 2372 115 0 0 chr3 139222888 139223200 -78813958 + AluSx SINE Alu 1 312 0 376 354 102 44 chr3 139223352 139223784 -78813374 - L2 LINE L2 0 3272 2816 326 294 128 19 chr3 139223815 139224026 -78813132 - L2 LINE L2 -645 2669 2436 329 232 80 24 chr3 139224092 139224217 -78812941 - MLT1J LTR MaLR -2 509 378 368 257 58 34 chr3 139224323 139224500 -78812658 - MLT1J2 LTR MaLR -275 184 10 2159 130 0 7 chr3 139225801 139226100 -78811058 + AluJb SINE Alu 7 303 -9 243 256 141 0 chr3 139226284 139226362 -78810796 + MIR SINE MIR 28 116 -146 513 247 95 25 chr3 139228748 139228906 -78808252 + MIR SINE MIR 56 224 -38 375 105 0 0 chr3 139230386 139230443 -78806715 + (TG)n Simple_repeat Simple_repeat 2 58 0 228 335 49 0 chr3 139230459 139230623 -78806535 - MIR SINE MIR -32 230 59 242 179 36 18 chr3 139231164 139231220 -78805938 + MIR SINE MIR 81 137 -125 414 252 81 0 chr3 139231275 139231386 -78805772 - L2 LINE L2 -4 3309 3190 1312 181 13 0 chr3 139231665 139231897 -78805261 + MER46A DNA MER2_type 2 236 0 280 327 56 0 chr3 139233417 139233524 -78803634 - L3b LINE CR1 -210 1373 1261 1355 248 101 53 chr3 139233825 139234364 -78802794 - L1MC4 LINE L1 -150 7892 7315 2264 156 76 2 chr3 139234364 139234761 -78802397 - MSTA LTR MaLR -2 426 1 1355 248 101 53 chr3 139234761 139234878 -78802280 - L1MC4 LINE L1 -727 7315 7205 3445 165 22 33 chr3 139234892 139235405 -78801753 - L1MB3 LINE L1 -1 6182 5678 1688 158 37 17 chr3 139235405 139235702 -78801456 - AluJo SINE Alu -9 303 1 3445 165 22 33 chr3 139235702 139235878 -78801280 - L1MB3 LINE L1 -505 5678 5501 797 171 11 61 chr3 139235878 139236059 -78801099 - MLT1C LTR MaLR -233 234 63 1434 181 0 4 chr3 139236062 139236299 -78800859 - AluJo SINE Alu -76 236 1 3324 220 119 16 chr3 139236300 139237747 -78799411 - L1M4c LINE L1 -2570 4074 2484 259 217 43 29 chr3 139237747 139237816 -78799342 + CT-rich Low_complexity Low_complexity 3 72 0 317 255 10 0 chr3 139237818 139237916 -78799242 + C-rich Low_complexity Low_complexity 5 103 0 1438 188 14 61 chr3 139237920 139238213 -78798945 - AluJo SINE Alu -33 279 1 754 159 37 90 chr3 139238213 139238336 -78798822 - L1M4c LINE L1 -4152 2494 2389 1021 176 41 9 chr3 139238336 139238557 -78798601 + L1MB4 LINE L1 5945 6172 -8 754 159 37 90 chr3 139238557 139238678 -78798480 - L1M4c LINE L1 -4257 2389 2263 312 242 110 0 chr3 139238718 139238809 -78798349 - L1MC4 LINE L1 -1332 6710 6610 11552 184 34 13 chr3 139242162 139242632 -78794526 - L1PA15 LINE L1 0 6165 5706 2489 109 21 107 chr3 139242632 139243100 -78794058 + MSTA LTR MaLR 1 428 0 11552 184 34 13 chr3 139243100 139244073 -78793085 - L1PA15 LINE L1 -459 5706 4755 2138 128 3 10 chr3 139244073 139244377 -78792781 - AluSx SINE Alu -10 302 1 11552 184 34 13 chr3 139244377 139245765 -78791393 - L1PA15 LINE L1 -1410 4755 3269 2315 95 3 22 chr3 139245765 139246080 -78791078 - AluSc SINE Alu 0 309 1 11552 184 34 13 chr3 139246080 139246479 -78790679 - L1PA15 LINE L1 -2896 3269 2880 4790 201 25 12 chr3 139246504 139246677 -78790481 - L1PA15 LINE L1 -3471 2675 2506 2273 76 11 0 chr3 139246677 139246953 -78790205 - AluY SINE Alu -16 295 17 4790 201 25 12 chr3 139246953 139247810 -78789348 - L1PA15 LINE L1 -3640 2506 1631 524 288 113 45 chr3 139247852 139248169 -78788989 - L1M4c LINE L1 -6121 421 72 2044 136 13 3 chr3 139248169 139248477 -78788681 - AluSx SINE Alu -1 311 1 524 288 113 45 chr3 139248477 139248541 -78788617 - L1M4c LINE L1 -6470 72 14 396 185 84 25 chr3 139248530 139248649 -78788509 - L1MC4 LINE L1 -805 7237 7112 * 552 218 28 41 chr3 139248703 139248874 -78788284 - L1MB7 LINE L1 -1 6183 6007 568 248 21 0 chr3 139248893 139249034 -78788124 - L1MD2 LINE L1 -22 6337 6194 2075 218 123 35 chr3 139249094 139249694 -78787464 - L1MDa LINE L1 -5848 692 40 350 281 69 20 chr3 139249721 139249980 -78787178 - L1ME LINE L1 -517 5604 5333 873 260 110 4 chr3 139250024 139250362 -78786796 - LTR50 LTR ERVL 0 795 340 325 263 45 8 chr3 139250470 139250603 -78786555 - LTR50 LTR ERVL -631 164 27 201 167 0 0 chr3 139251156 139251192 -78785966 + L2 LINE L2 3270 3305 -8 590 203 111 0 chr3 139251275 139251428 -78785730 + MER104 DNA Tc2 11 180 0 430 273 61 8 chr3 139251428 139251560 -78785598 - MIR SINE MIR -111 151 13 5260 144 24 66 chr3 139252328 139253333 -78783825 - L1MB8 LINE L1 -2 6176 5130 1559 129 66 59 chr3 139253333 139253619 -78783539 - AluJo SINE Alu -24 288 1 5260 144 24 66 chr3 139253619 139253680 -78783478 - L1MB8 LINE L1 -1048 5130 5068 228 216 0 0 chr3 139253680 139253717 -78783441 - AluY SINE Alu -264 39 3 5260 144 24 66 chr3 139253717 139253827 -78783331 - L1MB8 LINE L1 -1110 5068 5048 2313 109 3 0 chr3 139253827 139254131 -78783027 + AluSg SINE Alu 1 305 -5 5260 144 24 66 chr3 139254131 139254318 -78782840 - L1MB8 LINE L1 -1130 5048 4855 244 272 22 0 chr3 139255326 139255418 -78781740 - MLT1L LTR MaLR -14 601 508 365 282 46 88 chr3 139255554 139255816 -78781342 - MLT1L LTR MaLR -364 251 1 285 248 0 40 chr3 139257067 139257168 -78779990 - LTR67 LTR ERVL -28 529 433 264 51 77 0 chr3 139257432 139257471 -78779687 - MLT1K LTR MaLR -529 59 18 611 196 0 0 chr3 139257471 139257583 -78779575 - L1P LINE L1 -1159 4987 4876 * 949 157 162 5 chr3 139257577 139257781 -78779377 - L1MA7 LINE L1 -193 6098 5863 * 2761 145 61 0 chr3 139257780 139258257 -78778901 + L1 LINE L1 3889 4394 -1752 923 202 24 56 chr3 139259678 139259891 -78777267 - MER20 DNA MER1_type 0 219 14 414 167 122 0 chr3 139259926 139260016 -78777142 - MLT1D LTR MaLR 0 505 405 770 170 36 63 chr3 139260163 139260386 -78776772 - L1MB4 LINE L1 -12 6168 5952 40586 50 3 1 chr3 139260409 139266184 -78770974 - L1PA4 LINE L1 -11 6144 359 2263 105 3 3 chr3 139266184 139266480 -78770678 - AluSq SINE Alu -17 296 1 2106 157 12 116 chr3 139266480 139266991 -78770167 - L1MB4 LINE L1 -215 5968 5511 3664 197 67 44 chr3 139266991 139268826 -78768332 - L1MEd LINE L1 -3167 2962 1084 243 103 0 0 chr3 139268859 139268898 -78768260 + (TA)n Simple_repeat Simple_repeat 2 40 0 243 103 0 0 chr3 139268984 139269023 -78768135 + (TA)n Simple_repeat Simple_repeat 1 39 0 240 255 142 64 chr3 139269096 139269300 -78767858 - HAL1 LINE L1 -774 1733 1514 356 352 74 17 chr3 139269749 139269979 -78767179 + MIR SINE MIR 20 262 0 1745 146 0 24 chr3 139270632 139270919 -78766239 + AluJo SINE Alu 1 280 -32 219 353 32 55 chr3 139273527 139273745 -78763413 + L2 LINE L2 3007 3219 -53 398 277 66 22 chr3 139274426 139274697 -78762461 - L1ME4a LINE L1 -205 5916 5634 965 312 133 45 chr3 139274810 139275631 -78761527 + HAL1 LINE L1 9 901 -1606 15092 61 2 4 chr3 139275644 139277533 -78759625 + L1P LINE L1 4 1888 -4258 465 226 0 0 chr3 139277681 139278219 -78758939 + (TGG)n Simple_repeat Simple_repeat 1 538 0 558 193 0 0 chr3 139278224 139278385 -78758773 + GA-rich Low_complexity Low_complexity 1 161 0 513 212 0 0 chr3 139278383 139278562 -78758596 + (TGG)n Simple_repeat Simple_repeat 2 180 0 * 336 219 0 0 chr3 139278575 139278703 -78758455 + (TGG)n Simple_repeat Simple_repeat 2 129 0 279 191 88 0 chr3 139279591 139279659 -78757499 - MIR SINE MIR -184 78 5 22 0 0 0 chr3 139281123 139281145 -78756013 + AT_rich Low_complexity Low_complexity 1 22 0 813 202 63 63 chr3 139281661 139281945 -78755213 + L1ME3 LINE L1 2894 3177 -2969 2104 112 28 0 chr3 139281945 139282230 -78754928 + AluSp SINE Alu 1 293 -20 813 202 63 63 chr3 139282230 139282242 -78754916 + L1ME3 LINE L1 3177 3188 -2958 2339 99 3 0 chr3 139282242 139282544 -78754614 - AluSx SINE Alu -9 303 1 813 202 63 63 chr3 139282544 139282597 -78754561 + L1ME3 LINE L1 3187 3244 -2902 * 1622 229 169 38 chr3 139282575 139282726 -78754432 + L1ME3 LINE L1 3941 4071 -2075 1748 141 3 96 chr3 139282726 139283059 -78754099 - AluJo SINE Alu -10 302 1 1622 229 169 38 chr3 139283059 139283607 -78753551 + L1ME3 LINE L1 4071 4801 -1345 1596 194 32 0 chr3 139283607 139283730 -78753428 + AluJb SINE Alu 1 119 -193 189 0 0 0 chr3 139283730 139283751 -78753407 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 1596 194 32 0 chr3 139283751 139283910 -78753248 + AluJb SINE Alu 119 292 -20 1622 229 169 38 chr3 139283910 139284163 -78752995 + L1ME3 LINE L1 4801 5019 -1127 3517 191 50 40 chr3 139284168 139285230 -78751928 + L1MB7 LINE L1 4568 5647 -537 1748 111 24 20 chr3 139285230 139285482 -78751676 + AluSg SINE Alu 1 253 -57 3517 191 50 40 chr3 139285482 139285966 -78751192 + L1MB7 LINE L1 5647 6124 -60 934 261 52 42 chr3 139285942 139286588 -78750570 + L1ME3 LINE L1 5425 6136 -26 * 320 321 57 48 chr3 139287135 139287309 -78749849 + MIR SINE MIR 34 212 -50 2305 134 57 41 chr3 139287309 139287545 -78749613 - MSTB LTR MaLR 0 426 178 2367 93 3 0 chr3 139287545 139287846 -78749312 - AluSp SINE Alu -11 302 1 2305 134 57 41 chr3 139287846 139288028 -78749130 - MSTB LTR MaLR -248 178 1 320 321 57 48 chr3 139288028 139288062 -78749096 + MIR SINE MIR 212 244 -18 344 286 169 35 chr3 139288267 139288498 -78748660 - MLT1K LTR MaLR -317 271 10 445 314 16 58 chr3 139288797 139289039 -78748119 - MIR SINE MIR -12 250 19 394 228 25 122 chr3 139289042 139289239 -78747919 + MER5B DNA MER1_type 1 178 0 2538 63 0 3 chr3 139289377 139289678 -78747480 + AluY SINE Alu 1 300 -11 331 264 0 22 chr3 139289777 139289868 -78747290 - MER5A DNA MER1_type -92 97 9 180 397 0 15 chr3 139290414 139290482 -78746676 - MIR SINE MIR -108 100 34 204 256 0 51 chr3 139293649 139293727 -78743431 + L2 LINE L2 3171 3244 -69 28071 30 6 1 chr3 139294131 139298223 -78738935 + L1PA4 LINE L1 2042 6152 -3 1433 242 100 19 chr3 139298261 139298782 -78738376 + HAL1 LINE L1 895 1457 -1050 373 123 18 0 chr3 139298782 139298837 -78738321 - MLT1F LTR MaLR 0 542 487 796 206 144 0 chr3 139298837 139298997 -78738161 - MER58A DNA MER1_type 0 224 42 803 256 287 21 chr3 139299019 139299441 -78737717 - MLT1E LTR MaLR -46 547 14 420 208 39 54 chr3 139299452 139299478 -78737680 + HAL1 LINE L1 1448 1473 -1034 8117 112 36 25 chr3 139299478 139299988 -78737170 - HSMAR2 DNA Mariner -1 1301 798 2173 118 17 7 chr3 139299988 139300284 -78736874 - AluSx SINE Alu -13 299 1 8117 112 36 25 chr3 139300284 139301059 -78736099 - HSMAR2 DNA Mariner -504 798 2 420 208 39 54 chr3 139301059 139301162 -78735996 + HAL1 LINE L1 1473 1575 -932 * 813 205 202 39 chr3 139301160 139301467 -78735691 + HAL1 LINE L1 2045 2401 -106 870 237 72 0 chr3 139301545 139301794 -78735364 + L1MD3 LINE L1 7723 7989 -6 591 293 112 4 chr3 139302286 139302535 -78734623 - Charlie8 DNA MER1_type -2141 276 1 2003 110 0 28 chr3 139303463 139303745 -78733413 - AluSq SINE Alu -39 274 1 231 337 31 68 chr3 139304161 139304324 -78732834 + MIR SINE MIR 40 195 -63 3635 181 110 32 chr3 139305319 139306118 -78731040 + MER21B LTR ERV1 1 861 -2 258 253 0 25 chr3 139307066 139307145 -78730013 + CT-rich Low_complexity Low_complexity 3 79 0 182 62 31 0 chr3 139307707 139307739 -78729419 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2818 56 0 0 chr3 139307739 139308079 -78729079 - L1PA5 LINE L1 -13 6141 5802 747 253 75 37 chr3 139309876 139310224 -78726934 - L1MEc LINE L1 -3601 2479 2119 238 277 20 10 chr3 139310262 139310363 -78726795 - L1MEc LINE L1 -4598 1663 1562 275 335 39 40 chr3 139310892 139311129 -78726029 - MIR SINE MIR -7 255 14 306 302 135 50 chr3 139311295 139311833 -78725325 - L2 LINE L2 -208 3064 2499 224 306 92 10 chr3 139312325 139312423 -78724735 + L2 LINE L2 2947 3052 -220 370 288 40 8 chr3 139312773 139312898 -78724260 - LTR67 LTR ERVL -1 556 428 1019 237 45 31 chr3 139313206 139313564 -78723594 - L1M4 LINE L1 -2835 3311 2949 826 293 47 20 chr3 139313542 139313892 -78723266 - L1MEc LINE L1 -5632 438 49 * 1364 177 79 65 chr3 139313892 139314199 -78722959 + MLT1A2 LTR MaLR 1 316 -58 2217 112 0 0 chr3 139314199 139314513 -78722645 + AluSx SINE Alu 1 314 0 1364 177 79 65 chr3 139314513 139314571 -78722587 + MLT1A2 LTR MaLR 316 372 -2 826 293 47 20 chr3 139314571 139314616 -78722542 - L1MEc LINE L1 -6021 49 7 195 322 75 37 chr3 139315085 139315299 -78721859 + L2 LINE L2 2658 2879 -435 2386 84 0 7 chr3 139315409 139315708 -78721450 - AluY SINE Alu -14 297 1 331 304 0 10 chr3 139316501 139316603 -78720555 - MIR SINE MIR -70 138 38 215 279 81 0 chr3 139317464 139317550 -78719608 + (CATG)n Simple_repeat Simple_repeat 2 94 0 * 230 291 0 0 chr3 139317497 139317552 -78719606 + (CATATA)n Simple_repeat Simple_repeat 5 59 0 288 285 124 15 chr3 139317720 139317857 -78719301 + MARNA DNA Mariner 310 461 -125 2898 7 0 0 chr3 139318157 139318465 -78718693 + AluYa8 SINE Alu 1 308 -2 198 268 98 87 chr3 139318531 139318714 -78718444 - L2 LINE L2 -4 3309 3125 267 265 96 29 chr3 139318769 139318905 -78718253 - LTR67 LTR ERVL -4 553 409 532 261 103 41 chr3 139320447 139320905 -78716253 + L2 LINE L2 2699 3183 -130 238 289 53 0 chr3 139321583 139321659 -78715499 + MIR SINE MIR 65 144 -118 1570 183 25 0 chr3 139321665 139321939 -78715219 + AluJo SINE Alu 3 283 -29 217 175 381 0 chr3 139323110 139323173 -78713985 - MIR SINE MIR -130 132 46 1860 172 10 7 chr3 139323262 139323570 -78713588 - AluJo SINE Alu -3 309 1 393 78 0 0 chr3 139324106 139324170 -78712988 + Charlie4 DNA MER1_type 1801 1864 -97 2294 172 14 11 chr3 139324170 139324605 -78712553 - L1MB7 LINE L1 -9 6175 5740 1004 179 22 0 chr3 139324605 139324786 -78712372 + L1MB7 LINE L1 5981 6168 -16 493 293 16 68 chr3 139325114 139325248 -78711910 - MIR SINE MIR -26 236 97 236 53 26 0 chr3 139325248 139325286 -78711872 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 3873 23 5 0 chr3 139325286 139325726 -78711432 - L1PA2 LINE L1 -12 6143 5702 493 293 16 68 chr3 139325726 139325839 -78711319 - MIR SINE MIR -163 99 1 1691 152 10 38 chr3 139326004 139326314 -78710844 + AluJo SINE Alu 1 302 0 1401 168 67 46 chr3 139326349 139326634 -78710524 + AluJo SINE Alu 3 293 -19 229 211 200 21 chr3 139326889 139326984 -78710174 + MIR SINE MIR 33 144 -64 1141 263 138 26 chr3 139327379 139329036 -78708122 - L1MEc LINE L1 -2075 4866 2968 2072 203 69 15 chr3 139329036 139329515 -78707643 + MLT1D LTR MaLR 1 505 0 1141 263 138 26 chr3 139329515 139329818 -78707340 - L1MEc LINE L1 -3973 2968 2700 485 262 87 52 chr3 139329823 139330189 -78706969 - L1MEc LINE L1 -5035 1906 1528 2738 222 8 29 chr3 139330189 139330853 -78706305 + L1M4 LINE L1 1 651 -5891 653 245 0 0 chr3 139330858 139331017 -78706141 + L1M4 LINE L1 1665 1823 -4823 535 230 43 92 chr3 139331016 139331364 -78705794 - L1MEc LINE L1 -4887 1536 1206 * 1759 237 72 59 chr3 139331456 139332029 -78705129 - MLT1E LTR MaLR 0 593 14 291 283 35 29 chr3 139332110 139332283 -78704875 + CT-rich Low_complexity Low_complexity 2 175 0 1307 180 35 31 chr3 139332350 139332605 -78704553 - AluJo SINE Alu -7 305 50 505 230 95 66 chr3 139332863 139333167 -78703991 + L1MC5 LINE L1 7604 7916 -45 323 295 134 31 chr3 139334001 139334225 -78702933 + L2 LINE L2 3041 3287 -26 185 308 77 29 chr3 139335386 139335490 -78701668 - MIR SINE MIR -105 157 49 216 221 81 47 chr3 139335742 139335828 -78701330 + MIR3 SINE MIR 6 94 -114 216 242 152 30 chr3 139336231 139336330 -78700828 - MIR SINE MIR -131 131 21 441 287 84 35 chr3 139336604 139336806 -78700352 + MIR SINE MIR 47 258 -4 272 271 177 0 chr3 139336798 139336894 -78700264 + MIR SINE MIR 125 237 -25 * 21 0 0 0 chr3 139337627 139337648 -78699510 + AT_rich Low_complexity Low_complexity 1 21 0 377 300 43 14 chr3 139339680 139339820 -78697338 + MIR SINE MIR 98 241 -21 2139 114 13 126 chr3 139340128 139340401 -78696757 - LTR32 LTR ERVL -2 469 266 1405 103 43 56 chr3 139340401 139340634 -78696524 + MER30 DNA MER1_type 1 230 0 2139 114 13 126 chr3 139340634 139340814 -78696344 - LTR32 LTR ERVL -205 266 67 421 298 84 19 chr3 139341174 139341389 -78695769 + MIR SINE MIR 7 235 -27 200 368 40 0 chr3 139341474 139341550 -78695608 - L2 LINE L2 -52 3220 3142 1484 281 79 36 chr3 139342018 139342779 -78694379 + L1ME3A LINE L1 5330 6121 -49 274 252 0 94 chr3 139343391 139343518 -78693640 + L2 LINE L2 3153 3267 -5 427 263 202 33 chr3 139343922 139344135 -78693023 - MIR SINE MIR -1 261 13 2114 39 4 4 chr3 139344730 139344985 -78692173 + L1PA5 LINE L1 5900 6154 0 239 370 14 8 chr3 139345338 139345457 -78691701 + MIR SINE MIR 31 154 -54 394 313 123 31 chr3 139345628 139345855 -78691303 + MIR SINE MIR 1 248 -14 441 213 0 0 chr3 139345888 139346052 -78691106 + (CCA)n Simple_repeat Simple_repeat 2 165 0 279 202 0 0 chr3 139346064 139346148 -78691010 + (CCA)n Simple_repeat Simple_repeat 2 85 0 681 206 20 0 chr3 139346252 139346398 -78690760 + Tigger7 DNA MER2_type 191 339 -394 543 283 36 45 chr3 139346983 139347206 -78689952 + MIR SINE MIR 2 222 -40 606 274 92 63 chr3 139347719 139348209 -78688949 + MLT1J LTR MaLR 6 509 -2 222 317 73 24 chr3 139350454 139350577 -78686581 + MIR3 SINE MIR 79 207 -1 503 322 110 43 chr3 139350878 139351674 -78685484 - L2 LINE L2 -24 3289 2430 409 335 95 33 chr3 139352204 139352571 -78684587 - L3 LINE CR1 -33 1544 1155 1901 109 40 14 chr3 139352770 139353112 -78684046 - AluSx SINE Alu 0 349 1 378 244 41 8 chr3 139354895 139355018 -78682140 - L1MC4a LINE L1 -1882 5926 5800 405 273 124 8 chr3 139355019 139355140 -78682018 - MIR3 SINE MIR -6 202 68 516 286 60 16 chr3 139357391 139357576 -78679582 + MIR SINE MIR 25 217 -45 451 191 17 79 chr3 139358266 139358370 -78678788 + L1MB5 LINE L1 5997 6106 -72 243 0 0 0 chr3 139358370 139358397 -78678761 + (TTTAG)n Simple_repeat Simple_repeat 3 29 0 2268 94 0 7 chr3 139358397 139358685 -78678473 - AluSq SINE Alu -27 286 1 451 191 17 79 chr3 139358685 139358770 -78678388 + L1MB5 LINE L1 6104 6176 -2 426 370 169 0 chr3 139358905 139359237 -78677921 + L3 LINE CR1 361 748 -829 330 300 89 16 chr3 139359625 139359815 -78677343 + MLT1K LTR MaLR 360 563 -25 324 191 0 0 chr3 139359918 139360007 -78677151 + CT-rich Low_complexity Low_complexity 1 89 0 206 239 0 11 chr3 139360133 139360221 -78676937 + (CCA)n Simple_repeat Simple_repeat 1 87 0 209 207 0 52 chr3 139360240 139360298 -78676860 + (CACCAT)n Simple_repeat Simple_repeat 1 55 0 * 314 360 6 6 chr3 139360273 139360451 -78676707 + (CCA)n Simple_repeat Simple_repeat 2 179 0 184 294 152 11 chr3 139360803 139360895 -78676263 - MIR SINE MIR -124 138 34 * 386 252 50 25 chr3 139360847 139360966 -78676192 + MIR SINE MIR 79 200 -62 329 327 20 0 chr3 139361020 139361121 -78676037 - MIR SINE MIR -3 259 157 423 293 35 0 chr3 139361162 139361278 -78675880 - MIR SINE MIR -33 229 110 296 291 71 28 chr3 139361487 139361702 -78675456 - L1MC4 LINE L1 -80 7962 7630 232 319 44 11 chr3 139362671 139362762 -78674396 + L2 LINE L2 2728 2821 -493 24 0 0 0 chr3 139363211 139363235 -78673923 + AT_rich Low_complexity Low_complexity 1 24 0 434 264 110 59 chr3 139363250 139363504 -78673654 - L1ME4a LINE L1 -18 6103 5837 258 352 50 11 chr3 139363604 139363783 -78673375 - L1ME4a LINE L1 -459 5662 5477 198 0 0 0 chr3 139364062 139364084 -78673074 + (T)n Simple_repeat Simple_repeat 1 22 0 370 220 48 30 chr3 139364281 139364449 -78672709 - L1P LINE L1 -726 5425 5255 278 294 233 18 chr3 139364799 139364962 -78672196 + MIR SINE MIR 16 213 -49 203 340 92 82 chr3 139364959 139365253 -78671905 - L3 LINE CR1 -114 1463 1167 * 248 310 71 9 chr3 139365392 139365505 -78671653 - L3 LINE CR1 -662 915 796 257 301 0 27 chr3 139365607 139365680 -78671478 - L3 LINE CR1 -1317 260 190 2449 83 0 0 chr3 139366435 139366736 -78670422 - AluY SINE Alu -8 303 3 936 195 31 20 chr3 139366833 139367028 -78670130 + MER20 DNA MER1_type 3 199 -20 574 233 9 0 chr3 139367028 139367144 -78670014 + FLAM_A SINE Alu 1 117 -25 354 267 180 0 chr3 139367185 139367335 -78669823 - MER5A DNA MER1_type -12 177 1 598 241 123 15 chr3 139368519 139368722 -78668436 - MIR SINE MIR -18 244 20 242 286 116 36 chr3 139369776 139369888 -78667270 + L2 LINE L2 2970 3090 -182 459 228 68 27 chr3 139371845 139372046 -78665112 + L1MC4a LINE L1 5928 6185 -1623 2450 78 0 0 chr3 139372046 139372341 -78664817 + AluY SINE Alu 1 295 -16 459 228 68 27 chr3 139372341 139372427 -78664731 + L1MC4a LINE L1 6185 6266 -1542 841 205 62 9 chr3 139372454 139372678 -78664480 + L1MD2 LINE L1 6122 6357 -2 * 1858 277 93 18 chr3 139372672 139373550 -78663608 + L1MC4a LINE L1 6280 7223 -585 873 270 129 45 chr3 139373568 139374116 -78663042 - MLT1G1 LTR MaLR -1 589 3 975 254 129 37 chr3 139374177 139374743 -78662415 + L1MC4 LINE L1 7425 8042 0 1172 210 139 0 chr3 139376656 139376937 -78660221 - LTR32 LTR ERVL -138 333 14 297 350 36 0 chr3 139377323 139377460 -78659698 - MIR SINE MIR -1 261 120 3702 190 111 10 chr3 139377552 139378336 -78658822 + MER21B LTR ERV1 1 863 0 24 53 0 0 chr3 139379160 139379198 -78657960 + AT_rich Low_complexity Low_complexity 1 38 0 506 250 9 0 chr3 139380992 139381104 -78656054 + Tigger7 DNA MER2_type 1 113 -592 236 298 39 29 chr3 139431947 139432051 -78605107 + MIR SINE MIR 46 150 -112 504 244 47 8 chr3 139432545 139432672 -78604486 - L2 LINE L2 -1 3312 3181 624 320 36 20 chr3 139432765 139433012 -78604146 - MIR SINE MIR -10 252 2 1799 171 26 7 chr3 139434010 139434315 -78602843 + AluJb SINE Alu 1 311 -1 387 279 106 0 chr3 139434571 139434732 -78602426 + L1MC/D LINE L1 5595 5772 -2036 194 256 0 0 chr3 139437170 139437213 -78599945 + MIR SINE MIR 117 159 -103 2154 94 0 24 chr3 139437230 139437517 -78599641 - AluSq SINE Alu 0 313 34 209 354 83 10 chr3 139437881 139437977 -78599181 - MIR SINE MIR -139 123 21 441 261 60 1 chr3 139438114 139438253 -78598905 + MIR3 SINE MIR 8 160 -48 1192 181 29 5 chr3 139438268 139438472 -78598686 - MER58A DNA MER1_type -15 209 1 198 163 86 0 chr3 139439247 139439306 -78597852 - MIR SINE MIR -77 131 67 1358 147 15 0 chr3 139439819 139440017 -78597141 - AluJb SINE Alu -25 287 87 2462 100 0 0 chr3 139440136 139440437 -78596721 + AluSx SINE Alu 2 302 -10 263 277 42 50 chr3 139441242 139441361 -78595797 - MIR SINE MIR -88 174 57 278 327 86 0 chr3 139441451 139441606 -78595552 + MIR3 SINE MIR 24 170 -38 2182 169 3 8 chr3 139441652 139442019 -78595139 + MLT1A1 LTR MaLR 1 365 0 699 331 137 7 chr3 139442362 139442805 -78594353 - L2 LINE L2 0 3272 2774 1267 236 60 7 chr3 139442834 139443288 -78593870 - L1MEc LINE L1 -3097 3118 2641 1216 274 223 31 chr3 139443298 139443327 -78593831 - L1MEc LINE L1 -4640 1756 1734 1869 182 10 3 chr3 139443327 139443635 -78593523 - AluJb SINE Alu -2 310 1 1216 274 223 31 chr3 139443635 139444416 -78592742 - L1MEc LINE L1 -4662 1734 790 344 304 44 30 chr3 139446199 139446334 -78590824 - MIR SINE MIR -10 252 116 342 295 19 19 chr3 139446330 139446435 -78590723 + MIR SINE MIR 94 198 -64 * 288 0 0 0 chr3 139446644 139446676 -78590482 + (TG)n Simple_repeat Simple_repeat 2 33 0 228 67 0 0 chr3 139446726 139446756 -78590402 + (TG)n Simple_repeat Simple_repeat 2 31 0 319 346 50 0 chr3 139447029 139447188 -78589970 - MER117 DNA MER1_type -30 167 1 311 301 19 0 chr3 139447737 139447840 -78589318 + MIR SINE MIR 158 262 0 198 211 35 18 chr3 139449242 139449299 -78587859 + L3b LINE CR1 1110 1167 -416 213 290 71 71 chr3 139449405 139449560 -78587598 + L3b LINE CR1 1335 1489 -94 214 324 59 0 chr3 139450295 139450363 -78586795 + L2 LINE L2 3191 3262 -51 308 352 48 13 chr3 139450597 139450824 -78586334 - L2 LINE L2 -398 2916 2682 668 322 178 38 chr3 139452935 139453595 -78583563 - L3 LINE CR1 -111 1466 900 2352 84 0 0 chr3 139453595 139453879 -78583279 - AluSx SINE Alu -20 292 9 668 322 178 38 chr3 139453879 139454270 -78582888 - L3 LINE CR1 -677 900 268 461 295 44 27 chr3 139454569 139454757 -78582401 + MIR SINE MIR 1 192 -59 192 282 48 48 chr3 139454859 139454983 -78582175 - L3 LINE CR1 -140 1437 1314 228 295 67 2 chr3 139455931 139456042 -78581116 - MIR SINE MIR -62 146 31 266 272 37 0 chr3 139457103 139457184 -78579974 + MIR3 SINE MIR 98 181 -27 2060 143 99 13 chr3 139457400 139457792 -78579366 - MSTB LTR MaLR 0 426 1 2688 51 0 3 chr3 139458558 139458870 -78578288 - AluY SINE Alu 0 311 1 248 359 60 22 chr3 139460173 139460357 -78576801 + MIR SINE MIR 37 227 -35 1049 189 129 0 chr3 139460372 139460578 -78576580 + MER33 DNA MER1_type 1 256 -2329 2111 131 7 3 chr3 139460578 139460876 -78576282 - AluSx SINE Alu -13 299 1 1049 189 129 0 chr3 139460876 139460955 -78576203 + MER33 DNA MER1_type 256 323 -1 351 289 78 28 chr3 139461118 139461260 -78575898 - MIR SINE MIR -110 152 4 263 289 41 0 chr3 139461543 139461641 -78575517 + MIR SINE MIR 82 141 -67 338 348 62 11 chr3 139462270 139462519 -78574639 + MIR SINE MIR 1 262 0 369 313 17 11 chr3 139463035 139463193 -78573965 - MIR SINE MIR -22 186 28 334 280 53 23 chr3 139463225 139463357 -78573801 - L2 LINE L2 -493 2821 2686 379 252 79 39 chr3 139463362 139463489 -78573669 - L3 LINE CR1 -680 897 766 183 100 0 0 chr3 139463500 139463530 -78573628 + (TG)n Simple_repeat Simple_repeat 1 30 0 230 274 0 0 chr3 139463689 139463751 -78573407 - MARNA DNA Mariner -11 575 514 301 181 0 96 chr3 139464143 139464226 -78572932 - L1ME4a LINE L1 0 6121 6047 340 291 97 81 chr3 139464341 139464962 -78572196 - L1MC4a LINE L1 -1923 5885 5255 21 0 0 0 chr3 139465428 139465449 -78571709 + AT_rich Low_complexity Low_complexity 1 21 0 3160 264 126 37 chr3 139465643 139467095 -78570063 - L1MC4 LINE L1 -2 8040 6460 633 192 58 6 chr3 139467952 139468108 -78569050 + L1M4 LINE L1 4981 5144 -1002 287 282 58 32 chr3 139471518 139471674 -78565484 + MIR SINE MIR 21 180 -82 1213 244 64 55 chr3 139472200 139472655 -78564503 - MLT1C LTR MaLR -7 460 2 244 303 106 42 chr3 139472713 139472855 -78564303 - MLT1K LTR MaLR -15 573 423 2039 130 10 3 chr3 139474478 139474771 -78562387 - AluSx SINE Alu -17 295 1 1855 134 102 6 chr3 139475028 139475370 -78561788 + THE1C LTR MaLR 1 375 0 211 320 26 13 chr3 139477164 139477242 -78559916 - MIR SINE MIR -172 90 12 239 329 0 0 chr3 139477619 139477692 -78559466 - MIR SINE MIR -93 169 97 266 324 48 14 chr3 139479666 139479811 -78557347 + MLT1L LTR MaLR 98 247 -368 212 257 152 38 chr3 139480423 139480528 -78556630 + MIR SINE MIR 59 175 -87 252 0 0 0 chr3 139480622 139480650 -78556508 + (GA)n Simple_repeat Simple_repeat 1 28 0 348 263 109 64 chr3 139480786 139480942 -78556216 + L1ME4a LINE L1 5959 6121 0 225 0 0 0 chr3 139484572 139484597 -78552561 + (CAG)n Simple_repeat Simple_repeat 3 27 0 415 212 4 16 chr3 139485832 139485941 -78551217 - MLT1H LTR MaLR 0 549 458 275 303 69 55 chr3 139487154 139487299 -78549859 + MIR SINE MIR 25 171 -91 421 237 260 11 chr3 139487412 139487589 -78549569 + MLT1K LTR MaLR 346 566 -22 255 408 11 6 chr3 139488301 139488475 -78548683 + (CGTG)n Simple_repeat Simple_repeat 1 175 0 * 324 376 6 6 chr3 139488348 139488521 -78548637 + (TG)n Simple_repeat Simple_repeat 1 173 0 558 258 131 3 chr3 139488892 139489236 -78547922 - LTR33A LTR ERVL 0 523 111 847 258 47 27 chr3 139489488 139489744 -78547414 - MIR SINE MIR -1 261 1 805 274 45 24 chr3 139490273 139490605 -78546553 + L1ME4a LINE L1 2208 2546 -3600 225 229 16 0 chr3 139490608 139490669 -78546489 + L1ME4a LINE L1 5604 5665 -456 220 266 63 13 chr3 139490778 139490857 -78546301 + MIR SINE MIR 89 171 -91 1891 147 68 34 chr3 139491327 139491653 -78545505 - MER1B DNA MER1_type 0 337 1 911 176 0 0 chr3 139491740 139491893 -78545265 - FRAM SINE Alu -15 161 9 390 282 88 37 chr3 139491894 139492245 -78544913 + L1ME4a LINE L1 5711 6079 -42 224 327 109 18 chr3 139492619 139492784 -78544374 - L2 LINE L2 -61 3252 3073 264 305 130 0 chr3 139493208 139493339 -78543819 - MLT1K LTR MaLR -26 562 415 265 257 27 0 chr3 139493378 139493452 -78543706 - MLT1E1 LTR MaLR -79 575 500 318 331 87 41 chr3 139493552 139494090 -78543068 + L1PA8 LINE L1 5296 5858 -314 * 1389 281 34 25 chr3 139493607 139494137 -78543021 + L1ME3 LINE L1 5370 5904 -258 521 272 284 5 chr3 139494141 139494557 -78542601 - MLT1E3 LTR MaLR 0 624 62 373 241 193 39 chr3 139494598 139494805 -78542353 + L1ME3 LINE L1 5905 6143 -19 258 271 17 0 chr3 139494811 139494870 -78542288 + polypurine Low_complexity Low_complexity 4 63 0 25 51 0 0 chr3 139495086 139495125 -78542033 + AT_rich Low_complexity Low_complexity 1 39 0 344 209 165 0 chr3 139495339 139495430 -78541728 + MLT1K LTR MaLR 375 480 -108 739 217 0 0 chr3 139495560 139495689 -78541469 - FLAM_A SINE Alu -4 129 1 184 325 65 13 chr3 139496394 139496471 -78540687 + MIR SINE MIR 83 163 -99 407 285 107 30 chr3 139497180 139497490 -78539668 + MLT1G LTR MaLR 204 583 -7 202 346 25 0 chr3 139497640 139497721 -78539437 - L2 LINE L2 -228 3085 3003 520 234 25 19 chr3 139497919 139498077 -78539081 - L1MD2 LINE L1 -2 6357 6199 713 269 90 5 chr3 139498086 139498298 -78538860 - L1MD2 LINE L1 -221 6138 5909 * 5086 194 83 25 chr3 139498287 139499854 -78537304 - L1MDa LINE L1 -3977 2563 906 229 229 14 57 chr3 139500256 139500326 -78536832 + Charlie8 DNA MER1_type 1360 1426 -991 868 128 8 15 chr3 139500609 139500742 -78536416 + FLAM_C SINE Alu 1 132 -1 255 333 56 14 chr3 139500980 139501124 -78536034 + MIR SINE MIR 35 184 -78 357 258 21 10 chr3 139501375 139501472 -78535686 + MLT1K LTR MaLR 193 290 -298 245 203 85 0 chr3 139501584 139501643 -78535515 + MLT1K LTR MaLR 505 568 -20 281 346 92 13 chr3 139501791 139501944 -78535214 + L2 LINE L2 2594 2758 -556 492 279 0 0 chr3 139502297 139502698 -78534460 + (TG)n Simple_repeat Simple_repeat 1 401 0 600 308 14 7 chr3 139503657 139503936 -78533222 - L1M4 LINE L1 -843 5303 5023 225 323 173 26 chr3 139504064 139504405 -78532753 - L2 LINE L2 -674 2640 2250 267 273 153 27 chr3 139504568 139504718 -78532440 - MIR SINE MIR -69 193 25 291 319 130 32 chr3 139504763 139504948 -78532210 + MIR SINE MIR 3 205 -57 797 249 107 72 chr3 139504957 139505004 -78532154 + L1ME LINE L1 5388 5432 -730 1747 113 78 0 chr3 139505004 139505260 -78531898 + AluSx SINE Alu 1 276 -36 1751 169 16 13 chr3 139505265 139505572 -78531586 + AluJo SINE Alu 1 308 -4 797 249 107 72 chr3 139505572 139505891 -78531267 + L1ME LINE L1 5435 5773 -389 21 0 0 0 chr3 139506904 139506925 -78530233 + GC_rich Low_complexity Low_complexity 1 21 0 182 62 31 0 chr3 139507016 139507048 -78530110 + (CCCCCG)n Simple_repeat Simple_repeat 1 33 0 22 35 0 0 chr3 139507065 139507094 -78530064 + GC_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr3 139507173 139507208 -78529950 + GC_rich Low_complexity Low_complexity 1 35 0 181 67 33 67 chr3 139507228 139507288 -78529870 + (CGG)n Simple_repeat Simple_repeat 3 60 0 21 0 0 0 chr3 139507288 139507309 -78529849 + GC_rich Low_complexity Low_complexity 1 21 0 224 117 0 104 chr3 139507332 139507409 -78529749 + (CGGGG)n Simple_repeat Simple_repeat 3 71 0 41 66 0 0 chr3 139507618 139507694 -78529464 + GC_rich Low_complexity Low_complexity 1 76 0 284 269 71 64 chr3 139510579 139510720 -78526438 - L2 LINE L2 0 3313 3172 267 267 53 0 chr3 139510864 139510939 -78526219 + MIR SINE MIR 68 146 -62 258 374 53 8 chr3 139511160 139511291 -78525867 - MIR SINE MIR -93 169 33 270 56 0 0 chr3 139512642 139512678 -78524480 + (CTG)n Simple_repeat Simple_repeat 3 38 0 195 303 45 0 chr3 139513972 139514038 -78523120 - MIR SINE MIR -193 69 1 367 220 34 0 chr3 139514153 139514247 -78522911 - MIR SINE MIR -62 146 50 233 306 35 0 chr3 139517965 139518050 -78519108 + MIR SINE MIR 59 146 -116 184 154 0 51 chr3 139525814 139525853 -78511305 - MIR SINE MIR -70 192 156 324 0 0 0 chr3 139527159 139527195 -78509963 + (CTGGGG)n Simple_repeat Simple_repeat 1 36 0 276 296 53 23 chr3 139531379 139531511 -78505647 - MER3 DNA MER1_type -2 207 72 321 302 107 10 chr3 139531513 139531718 -78505440 - L2 LINE L2 -166 3147 2923 905 234 44 0 chr3 139534010 139534236 -78502922 + ERVL LTR ERVL 1768 2003 -3761 752 240 28 23 chr3 139534235 139534452 -78502706 + ERVL LTR ERVL 1912 2129 -3635 * 201 74 0 0 chr3 139538672 139538699 -78498459 + (CGGGG)n Simple_repeat Simple_repeat 5 31 0 387 340 90 0 chr3 139542771 139542915 -78494243 + MIR SINE MIR 25 181 -81 292 284 0 0 chr3 139543285 139543359 -78493799 - MER81 DNA DNA -21 93 20 372 377 36 0 chr3 139544002 139544140 -78493018 - MIR SINE MIR -66 196 54 255 356 60 13 chr3 139545462 139545611 -78491547 + MIR SINE MIR 3 158 -104 203 271 51 0 chr3 139547567 139547626 -78489532 + MIR SINE MIR 1 62 -200 215 283 17 0 chr3 139547966 139548026 -78489132 + MIR SINE MIR 190 250 -12 2641 196 19 11 chr3 139548918 139549438 -78487720 - L1MC1 LINE L1 0 6333 5810 801 141 15 2 chr3 139549448 139549461 -78487697 + L1MB3 LINE L1 5720 5731 -420 1584 174 47 7 chr3 139549461 139549759 -78487399 - L1MB3 LINE L1 -9 6174 5865 801 141 15 2 chr3 139549759 139549893 -78487265 + L1MB3 LINE L1 5731 5866 -285 293 291 10 19 chr3 139550353 139550456 -78486702 + MIR SINE MIR 22 123 -139 230 302 179 0 chr3 139551146 139551252 -78485906 - L2 LINE L2 -268 3045 2921 330 350 64 39 chr3 139551629 139551863 -78485295 - L1M4 LINE L1 -2301 3845 3606 233 316 154 0 chr3 139555809 139555926 -78481232 + MER3 DNA MER1_type 15 149 -60 207 182 0 0 chr3 139559240 139559273 -78477885 + (TATATG)n Simple_repeat Simple_repeat 6 38 0 280 311 136 15 chr3 139561549 139561681 -78475477 - MER5B DNA MER1_type -8 170 23 303 295 93 22 chr3 139562155 139562294 -78474864 - MIR SINE MIR -47 215 67 340 297 31 8 chr3 139563626 139563754 -78473404 - MIR SINE MIR -98 164 34 911 277 121 26 chr3 139564107 139564530 -78472628 - MLT1K LTR MaLR -23 565 103 739 341 28 6 chr3 139564535 139564896 -78472262 + L1PB4 LINE L1 5493 5861 -295 * 2562 198 58 16 chr3 139564576 139565198 -78471960 + L1MB3 LINE L1 5533 6180 -3 268 280 53 58 chr3 139566302 139566491 -78470667 + MER113 DNA MER1_type? 89 276 -245 579 256 39 69 chr3 139566843 139567148 -78470010 + MLT2D LTR ERVL 1 296 -118 272 260 16 4 chr3 139567775 139567849 -78469309 + MIR SINE MIR 84 147 -61 474 214 41 0 chr3 139568365 139568463 -78468695 + MER91C DNA MER1_type 39 140 0 2643 10 0 3 chr3 139568688 139568987 -78468171 - AluYa5 SINE Alu -13 298 1 676 221 0 27 chr3 139569411 139569781 -78467377 + GA-rich Low_complexity Low_complexity 1 360 0 819 198 165 0 chr3 139569914 139570162 -78466996 + MER33 DNA MER1_type 34 322 -2 954 108 0 20 chr3 139570348 139570515 -78466643 - AluSg/x SINE Alu 0 310 164 4574 125 15 124 chr3 139570515 139572062 -78465096 + pTR5 LTR ERV1 743 2606 0 1179 112 6 6 chr3 139572062 139572231 -78464927 - AluSp SINE Alu -144 169 1 3569 213 36 6 chr3 139572251 139573220 -78463938 - L1MB7 LINE L1 -10 6174 5172 436 297 43 35 chr3 139573814 139574089 -78463069 - L1MEc LINE L1 -863 1713 1409 413 331 216 4 chr3 139575328 139575573 -78461585 + L2 LINE L2 3017 3313 0 356 281 10 0 chr3 139575992 139576088 -78461070 + MLT1H LTR MaLR 75 171 -378 376 217 47 19 chr3 139577597 139577703 -78459455 - LTR67 LTR ERVL 0 557 449 1046 215 169 10 chr3 139578009 139578352 -78458806 - MLT1F LTR MaLR 0 542 178 676 326 158 0 chr3 139578484 139578769 -78458389 - L1M4 LINE L1 -3040 3106 2777 681 333 43 34 chr3 139578769 139579207 -78457951 - HAL1 LINE L1 -2 2505 2064 1366 93 0 32 chr3 139579258 139579506 -78457652 - pTR5 LTR ERV1 -218 2220 172 261 272 0 0 chr3 139579506 139579587 -78457571 - LTR30 LTR ERV1 -98 624 544 4939 81 68 28 chr3 139579587 139580386 -78456772 - pTR5 LTR ERV1 -413 2025 1195 207 245 5 94 chr3 139580485 139580677 -78456481 + (CCCCG)n Simple_repeat Simple_repeat 4 178 0 * 211 208 0 21 chr3 139580637 139580685 -78456473 + C-rich Low_complexity Low_complexity 6 52 0 24 32 0 0 chr3 139580781 139580812 -78456346 + GC_rich Low_complexity Low_complexity 1 31 0 2016 188 15 26 chr3 139580933 139581396 -78455762 - pTR5 LTR ERV1 -1240 1198 741 241 250 79 0 chr3 139581561 139581637 -78455521 - LTR45 LTR ERV1 0 525 444 1122 251 153 45 chr3 139581752 139582418 -78454740 - HAL1 LINE L1 -797 1710 973 396 194 82 10 chr3 139582442 139582540 -78454618 - HAL1 LINE L1 -1606 901 797 993 274 111 0 chr3 139582551 139582931 -78454227 + L1ME3A LINE L1 5711 6132 -38 406 278 113 17 chr3 139583023 139583253 -78453905 - HAL1 LINE L1 -1837 670 419 402 260 30 6 chr3 139583391 139583560 -78453598 - HAL1 LINE L1 -1260 1247 1075 1670 181 16 14 chr3 139583569 139583940 -78453218 - L1MD1 LINE L1 -7 6235 5864 2017 228 26 11 chr3 139783973 139784518 -78252640 + L1MB7 LINE L1 5612 6164 -20 1905 137 3 0 chr3 139784744 139785028 -78252130 - AluSx SINE Alu -22 290 6 1281 166 92 0 chr3 139785031 139785260 -78251898 - AluJb SINE Alu -28 284 35 2308 104 0 0 chr3 139785638 139785947 -78251211 - AluSc SINE Alu 0 309 1 1659 94 26 9 chr3 139786546 139786779 -78250379 + AluSg SINE Alu 1 237 -73 1770 175 3 16 chr3 139786802 139787117 -78250041 + AluJo SINE Alu 1 311 -1 909 263 113 0 chr3 139787117 139787470 -78249688 + L1ME1 LINE L1 5693 6244 -90 779 133 47 0 chr3 139787486 139787614 -78249544 - Tigger3(Golem) DNA MER2_type -40 2989 2856 844 94 0 8 chr3 139787614 139787731 -78249427 + AluJb SINE Alu 1 116 -196 22 35 0 0 chr3 139787735 139787764 -78249394 + AT_rich Low_complexity Low_complexity 1 29 0 512 73 0 0 chr3 139787784 139787852 -78249306 - Tigger3(Golem) DNA MER2_type -160 2869 2802 418 233 193 23 chr3 139787952 139788128 -78249030 - MLT1E2 LTR MaLR -269 357 152 210 296 14 14 chr3 139788272 139788343 -78248815 - MIR SINE MIR -65 143 73 1340 230 53 0 chr3 139788664 139788964 -78248194 + MER58B DNA MER1_type 3 318 -23 1086 162 15 5 chr3 139789066 139789263 -78247895 + AluJb SINE Alu 109 307 -5 604 256 111 99 chr3 139789263 139789607 -78247551 - MLT1L LTR MaLR -53 458 111 352 225 22 22 chr3 139789553 139789642 -78247516 - LTR67 LTR ERVL -389 168 80 * 1680 154 3 48 chr3 139790204 139790516 -78246642 + AluJb SINE Alu 1 298 -14 6868 123 55 20 chr3 139790703 139791258 -78245900 + Tigger1 DNA MER2_type 968 1502 -916 2083 123 0 0 chr3 139791258 139791551 -78245607 + AluSx SINE Alu 3 295 -17 2320 94 0 0 chr3 139791551 139791858 -78245300 + AluY SINE Alu 1 307 -4 6868 123 55 20 chr3 139791858 139792506 -78244652 + Tigger1 DNA MER2_type 1501 2214 -204 1592 178 15 0 chr3 139792639 139792909 -78244249 - AluJb SINE Alu -38 274 1 299 211 0 13 chr3 139792934 139793010 -78244148 + CT-rich Low_complexity Low_complexity 2 76 0 7636 31 14 0 chr3 139793013 139793025 -78244133 - L1PA5 LINE L1 0 6154 6144 225 0 0 0 chr3 139793025 139793050 -78244108 + (TA)n Simple_repeat Simple_repeat 2 26 0 7636 31 14 0 chr3 139793050 139794408 -78242750 - L1PA5 LINE L1 -10 6144 4776 374 270 68 7 chr3 139794520 139794668 -78242490 + L2 LINE L2 2894 3050 -222 425 286 22 7 chr3 139794740 139794886 -78242272 + MIR3 SINE MIR 7 153 -69 188 260 40 0 chr3 139795949 139795999 -78241159 - L2 LINE L2 0 3313 3262 301 258 56 0 chr3 139796627 139796716 -78240442 - MIR SINE MIR -66 196 103 1158 148 0 0 chr3 139797324 139797500 -78239658 + FRAM SINE Alu 1 175 -1 181 95 24 24 chr3 139797827 139797869 -78239289 + (GGA)n Simple_repeat Simple_repeat 2 43 0 403 306 69 14 chr3 139798358 139798502 -78238656 + MIR SINE MIR 88 239 -23 222 304 0 0 chr3 139798662 139798718 -78238440 + (TGGG)n Simple_repeat Simple_repeat 3 58 0 550 244 0 11 chr3 139798721 139798901 -78238257 + (TGGA)n Simple_repeat Simple_repeat 2 179 0 396 204 126 0 chr3 139799781 139799884 -78237274 + L2 LINE L2 3180 3295 -18 215 287 90 49 chr3 139801010 139801132 -78236026 - MIR3 SINE MIR -76 132 6 213 341 66 0 chr3 139801621 139801712 -78235446 + MER5A DNA MER1_type 35 131 -58 1965 243 112 22 chr3 139801713 139802257 -78234901 + MLT1G1 LTR MaLR 2 594 -1 915 216 68 127 chr3 139802487 139802974 -78234184 - MLT1H LTR MaLR 0 549 92 2807 215 33 8 chr3 139803177 139803838 -78233320 - L1MB8 LINE L1 -1 6177 5500 26 50 0 0 chr3 139804185 139804225 -78232933 + GC_rich Low_complexity Low_complexity 1 40 0 337 208 26 4 chr3 139806208 139806292 -78230866 + L1MC/D LINE L1 5673 5755 -407 898 118 7 20 chr3 139806546 139806699 -78230459 + AluSq/x SINE Alu 1 151 -162 2084 87 4 0 chr3 139806801 139807077 -78230081 - AluSx SINE Alu -35 277 1 428 277 77 54 chr3 139807225 139807485 -78229673 - MLT1H LTR MaLR -198 351 86 327 354 40 40 chr3 139807516 139807568 -78229590 - L1M4 LINE L1 -3597 2549 2498 2712 80 33 33 chr3 139807568 139807966 -78229192 - MER48 LTR ERV1 0 398 1 327 354 40 40 chr3 139807966 139808111 -78229047 - L1M4 LINE L1 -3647 2499 2352 301 347 14 41 chr3 139808243 139808390 -78228768 - HAL1 LINE L1 -803 1704 1562 2102 132 0 3 chr3 139808440 139808743 -78228415 - AluSx SINE Alu -10 302 1 2169 110 0 0 chr3 139808839 139809140 -78228018 - AluSx SINE Alu -9 303 3 600 311 69 22 chr3 139809169 139809487 -78227671 - L1ME LINE L1 -299 5822 5490 189 0 0 0 chr3 139810046 139810067 -78227091 + (T)n Simple_repeat Simple_repeat 1 21 0 337 261 0 67 chr3 139811066 139811185 -78225973 + MLT1K LTR MaLR 405 515 -73 190 293 164 50 chr3 139811195 139811335 -78225823 + L3 LINE CR1 821 976 -601 460 286 111 66 chr3 139811387 139811737 -78225421 + L3 LINE CR1 1209 1574 -3 403 278 92 17 chr3 139811958 139812131 -78225027 - MIR SINE MIR -44 218 33 926 262 156 68 chr3 139812385 139813092 -78224066 + L2 LINE L2 1622 2390 -924 1797 160 104 48 chr3 139813242 139813540 -78223618 + MSTD LTR MaLR 1 326 -70 2143 122 3 3 chr3 139813540 139813852 -78223306 - AluSx SINE Alu 0 312 1 1797 160 104 48 chr3 139813852 139813928 -78223230 + MSTD LTR MaLR 326 396 0 199 276 38 48 chr3 139814183 139814288 -78222870 + MIR SINE MIR 20 123 -139 466 322 133 36 chr3 139814558 139814943 -78222215 - MLT1K LTR MaLR -165 423 2 936 275 127 40 chr3 139815454 139815857 -78221301 - MLT1K LTR MaLR 0 588 151 254 330 58 0 chr3 139816270 139816373 -78220785 - L2 LINE L2 -1 3312 3204 1997 176 31 11 chr3 139816441 139816822 -78220336 - MLT1B LTR MaLR -1 389 1 193 323 121 14 chr3 139817065 139817288 -78219870 + L2 LINE L2 2509 2755 -559 469 263 38 0 chr3 139818318 139818451 -78218707 + MLT2C1 LTR ERVL 31 168 -229 1971 128 3 3 chr3 139818702 139818999 -78218159 - AluSx SINE Alu -15 297 1 186 209 0 0 chr3 139819078 139819121 -78218037 + (TG)n Simple_repeat Simple_repeat 2 44 0 355 308 45 39 chr3 139819918 139820074 -78217084 - L1ME4a LINE L1 -19 6102 5946 2189 104 0 0 chr3 139820081 139820379 -78216779 - AluSx SINE Alu -14 298 1 320 290 114 8 chr3 139820432 139820563 -78216595 + MIR SINE MIR 20 164 -98 396 259 9 45 chr3 139820563 139820675 -78216483 + MER97b DNA MER1_type? 1 108 -945 * 481 148 0 70 chr3 139820658 139820740 -78216418 - MER104 DNA Tc2 -1791 107 34 1571 187 67 0 chr3 139820740 139821023 -78216135 + AluJb SINE Alu 4 305 -7 481 148 0 70 chr3 139821023 139821055 -78216103 - MER104 DNA Tc2 -1864 34 1 1300 152 38 0 chr3 139821216 139821427 -78215731 - MER20 DNA MER1_type 0 219 1 208 267 200 0 chr3 139821520 139821610 -78215548 + MER5A DNA MER1_type 6 113 -76 1681 167 7 21 chr3 139821793 139822080 -78215078 - AluJo SINE Alu -28 284 2 302 250 65 24 chr3 139822163 139822287 -78214871 - L1ME4a LINE L1 -2 6119 5991 1992 167 47 29 chr3 139822509 139823055 -78214103 - MLT2A2 LTR ERVL 0 554 1 302 324 93 0 chr3 139823769 139823939 -78213219 + MIR SINE MIR 31 213 -49 3829 146 24 21 chr3 139824120 139824785 -78212373 + Tigger1 DNA MER2_type 2 668 -1750 624 261 7 0 chr3 139824935 139825073 -78212085 - MIR SINE MIR -1 261 123 199 375 57 21 chr3 139825113 139825305 -78211853 + MIR SINE MIR 35 233 -29 429 272 198 50 chr3 139825361 139825973 -78211185 - L2 LINE L2 -17 3255 2549 550 252 110 7 chr3 139826315 139826470 -78210688 - MIR SINE MIR -72 190 20 2091 123 10 0 chr3 139826583 139826892 -78210266 - AluSx SINE Alu 0 312 1 426 281 133 20 chr3 139827195 139827398 -78209760 - MIR SINE MIR -3 259 34 255 316 59 29 chr3 139827823 139827959 -78209199 - MIR SINE MIR -41 221 82 383 287 110 65 chr3 139828037 139828466 -78208692 - L1MEd LINE L1 -5174 945 498 205 325 13 13 chr3 139828829 139828906 -78208252 - L2 LINE L2 -1 3271 3195 201 204 41 0 chr3 139829427 139829476 -78207682 + CT-rich Low_complexity Low_complexity 3 53 0 957 312 137 2 chr3 139829476 139829877 -78207281 - MLT1K LTR MaLR -2 586 132 225 241 0 17 chr3 139830754 139830812 -78206346 + G-rich Low_complexity Low_complexity 2 58 0 297 331 15 22 chr3 139831165 139831301 -78205857 + MIR SINE MIR 9 143 -119 241 137 78 20 chr3 139831371 139831422 -78205736 + MIR SINE MIR 84 137 -71 709 207 76 0 chr3 139832478 139832623 -78204535 + MER3 DNA MER1_type 1 156 -53 927 94 0 0 chr3 139832624 139832752 -78204406 - AluSp/q SINE Alu -4 309 182 185 250 68 57 chr3 139832882 139832970 -78204188 - MIR SINE MIR -74 134 46 1140 294 65 26 chr3 139833229 139833657 -78203501 + MER20B DNA MER1_type 8 452 -331 1166 92 0 0 chr3 139833673 139833826 -78203332 + AluSp/q SINE Alu 156 308 -5 201 152 0 0 chr3 139833866 139833899 -78203259 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 500 258 64 6 chr3 139833990 139834190 -78202968 + MER20B DNA MER1_type 510 734 -49 261 283 66 9 chr3 139834514 139834620 -78202538 - MIR SINE MIR -80 128 17 449 288 39 0 chr3 139835155 139835307 -78201851 - MER113 DNA MER1_type? -163 358 201 517 202 0 0 chr3 139835307 139835411 -78201747 - MER57A LTR ERV1 0 403 300 236 272 155 10 chr3 139835419 139835522 -78201636 - MER57B LTR ERV1 -297 137 20 1189 71 0 103 chr3 139835534 139835718 -78201440 - AluY SINE Alu -10 301 137 972 153 58 5 chr3 139835824 139836014 -78201144 + Tigger1 DNA MER2_type 2217 2416 -2 2245 113 3 0 chr3 139836399 139836692 -78200466 - AluSq SINE Alu -19 294 1 310 301 92 37 chr3 139837484 139837647 -78199511 - MIR SINE MIR -62 200 29 292 274 30 33 chr3 139837810 139838093 -78199065 - L1M4 LINE L1 -1531 4615 4331 332 319 146 0 chr3 139838095 139838239 -78198919 + MER5A DNA MER1_type 25 189 0 888 100 9 45 chr3 139838648 139838869 -78198289 + (TCCA)n Simple_repeat Simple_repeat 1 213 0 2347 68 4 0 chr3 139839119 139839427 -78197731 - AluY SINE Alu 0 309 1 2276 116 3 3 chr3 139839427 139839728 -78197430 - AluSx SINE Alu -11 301 1 231 196 54 0 chr3 139840088 139840144 -78197014 - L2 LINE L2 -27 3245 3187 896 120 0 0 chr3 139840591 139840708 -78196450 - AluSp/q SINE Alu -11 302 186 848 126 0 44 chr3 139840813 139840948 -78196210 - AluJb SINE Alu -179 133 5 2316 113 0 0 chr3 139840957 139841258 -78195900 - AluSx SINE Alu -11 301 1 2815 229 47 53 chr3 139841258 139842114 -78195044 + L1MD2 LINE L1 5262 6112 -247 2122 139 0 3 chr3 139842115 139842416 -78194742 - AluSp SINE Alu -13 300 1 400 322 101 20 chr3 139842484 139842683 -78194475 + HAL1 LINE L1 446 660 -1847 456 288 93 15 chr3 139842692 139842897 -78194261 + HAL1 LINE L1 712 932 -1575 2188 202 91 8 chr3 139842940 139843459 -78193699 - MER68 LTR ERV1 0 562 1 1238 147 0 11 chr3 139843497 139843681 -78193477 + AluSg/x SINE Alu 120 301 -11 596 275 58 0 chr3 139843681 139843852 -78193306 + HAL1 LINE L1 1207 1387 -1120 * 1573 254 135 10 chr3 139843836 139844477 -78192681 + L1MDa LINE L1 2 968 -5572 1371 173 47 24 chr3 139844548 139844803 -78192355 - AluJo SINE Alu 0 312 52 723 186 160 17 chr3 139844805 139845042 -78192116 + L1MDa LINE L1 1015 1285 -5258 994 187 0 32 chr3 139845042 139845229 -78191929 + AluJo SINE Alu 118 298 -14 1977 137 27 0 chr3 139845231 139845524 -78191634 + AluSg1 SINE Alu 1 301 -8 651 131 7 44 chr3 139845524 139845661 -78191497 + L1MDa LINE L1 1310 1441 -5099 2496 67 0 0 chr3 139845661 139845959 -78191199 + AluY SINE Alu 1 298 -13 279 0 0 0 chr3 139845995 139846026 -78191132 + (TCTCCC)n Simple_repeat Simple_repeat 6 36 0 491 191 64 0 chr3 139846536 139846646 -78190512 + L1MA7 LINE L1 6173 6289 -2 2379 86 0 0 chr3 139846665 139846956 -78190202 + AluY SINE Alu 1 291 -20 22 0 0 0 chr3 139847696 139847718 -78189440 + AT_rich Low_complexity Low_complexity 1 22 0 2510 47 7 3 chr3 139848570 139848868 -78188290 - AluY SINE Alu -12 299 1 210 281 73 10 chr3 139849816 139849912 -78187246 + MIR SINE MIR 30 131 -77 2404 143 147 25 chr3 139850087 139850610 -78186548 - LTR4 LTR ERV1 0 588 2 2733 153 14 7 chr3 139850612 139851042 -78186116 - HERV3 LTR ERV1 0 8426 7994 5881 136 14 12 chr3 139851062 139851958 -78185200 - HERV3 LTR ERV1 -2108 6318 5421 2005 218 32 8 chr3 139851973 139852373 -78184785 - HERV3 LTR ERV1 -5273 3153 2744 * 13972 150 42 49 chr3 139852371 139853028 -78184130 - HERV3 LTR ERV1 -5891 2535 1875 2503 73 0 3 chr3 139853028 139853328 -78183830 + AluY SINE Alu 2 300 -11 13972 150 42 49 chr3 139853328 139855222 -78181936 - HERV3 LTR ERV1 -6551 1875 2 2544 133 143 25 chr3 139855222 139855748 -78181410 - LTR4 LTR ERV1 0 588 1 816 175 42 71 chr3 139855923 139856163 -78180995 + L1MD1 LINE L1 5991 6223 -19 281 235 0 82 chr3 139857044 139857142 -78180016 - MIR SINE MIR -132 130 41 4169 67 14 2 chr3 139857719 139858285 -78178873 + L1PA5 LINE L1 5581 6153 -1 2354 86 23 0 chr3 139858335 139858637 -78178521 + AluSq SINE Alu 1 309 -4 505 285 83 24 chr3 139859323 139859554 -78177604 - MIR SINE MIR -10 252 4 2530 76 3 0 chr3 139859625 139859929 -78177229 - AluY SINE Alu -6 305 1 893 191 6 0 chr3 139861443 139861605 -78175553 - FAM SINE Alu -10 165 3 381 291 106 14 chr3 139861673 139861814 -78175344 - MIR SINE MIR -87 175 22 2447 96 0 0 chr3 139862018 139862321 -78174837 - AluSx SINE Alu -9 303 1 184 182 0 0 chr3 139862794 139862827 -78174331 - MIR SINE MIR -151 111 79 190 100 0 0 chr3 139862827 139862857 -78174301 - MIR SINE MIR -144 118 89 243 128 43 0 chr3 139862859 139862906 -78174252 - MIR SINE MIR -136 126 78 231 162 0 0 chr3 139862906 139862943 -78174215 - MIR SINE MIR -147 115 79 203 225 0 0 chr3 139862943 139862983 -78174175 - MIR SINE MIR -144 118 79 182 229 0 0 chr3 139862984 139863019 -78174139 - MIR SINE MIR -145 117 83 194 158 79 0 chr3 139863021 139863059 -78174099 - MIR SINE MIR -143 119 79 246 150 0 0 chr3 139863059 139863099 -78174059 - MIR SINE MIR -144 118 79 218 150 0 0 chr3 139863099 139863139 -78174019 - MIR SINE MIR -144 118 79 276 100 0 0 chr3 139863179 139863219 -78173939 - MIR SINE MIR -144 118 79 258 150 0 0 chr3 139863219 139863259 -78173899 - MIR SINE MIR -144 118 79 263 115 0 12 chr3 139863282 139863330 -78173828 - MIR SINE MIR -83 125 80 312 50 0 0 chr3 139863331 139863371 -78173787 - MIR SINE MIR -144 118 79 555 214 16 0 chr3 139863378 139863504 -78173654 + AluJb SINE Alu 184 311 -1 2439 171 33 23 chr3 139863504 139863735 -78173423 + L1MB7 LINE L1 5598 5825 -359 1858 173 3 0 chr3 139863735 139864030 -78173128 + AluJo SINE Alu 5 300 -12 2439 171 33 23 chr3 139864030 139864217 -78172941 + L1MB7 LINE L1 5825 6024 -160 2239 117 10 0 chr3 139864217 139864524 -78172634 - AluSp SINE Alu -3 310 1 2439 171 33 23 chr3 139864524 139864625 -78172533 + L1MB7 LINE L1 6024 6123 -61 1260 167 0 20 chr3 139864625 139864829 -78172329 - AluJb SINE Alu -23 289 90 357 85 0 17 chr3 139864838 139864897 -78172261 + L1MB7 LINE L1 6111 6168 -16 228 163 23 0 chr3 139864897 139864940 -78172218 + Charlie5 DNA MER1_type 2542 2585 -27 346 310 47 16 chr3 139865697 139865826 -78171332 + L2 LINE L2 3136 3268 -4 245 279 0 13 chr3 139866060 139866139 -78171019 + MLT1K LTR MaLR 151 228 -360 715 199 151 0 chr3 139866437 139866714 -78170444 - L2 LINE L2 -303 3010 2689 278 229 67 57 chr3 139866997 139867102 -78170056 - MIR3 SINE MIR -9 199 94 760 260 91 66 chr3 139867112 139867519 -78169639 - MLT1K LTR MaLR -4 584 168 714 170 106 0 chr3 139868387 139868528 -78168630 + MIR SINE MIR 3 158 -104 308 226 49 29 chr3 139869275 139869377 -78167781 + LTR67 LTR ERVL 437 540 -17 223 342 0 0 chr3 139869469 139869548 -78167610 + MIR SINE MIR 74 152 -56 220 146 83 21 chr3 139869852 139869900 -78167258 - MIR SINE MIR -100 162 112 1193 282 40 24 chr3 139870021 139870414 -78166744 + L1M4 LINE L1 3682 4086 -2060 1954 164 0 10 chr3 139870414 139870725 -78166433 + AluJb SINE Alu 1 308 -4 1193 282 40 24 chr3 139870725 139870831 -78166327 + L1M4 LINE L1 4086 4189 -1957 330 299 109 15 chr3 139871042 139871179 -78165979 + MIR SINE MIR 62 211 -51 319 267 56 0 chr3 139871806 139871896 -78165262 - MIR SINE MIR -66 196 102 509 267 50 25 chr3 139873637 139873798 -78163360 - MIR SINE MIR -70 192 28 253 220 51 0 chr3 139874073 139874132 -78163026 - MIR SINE MIR -147 115 54 1674 178 50 4 chr3 139874570 139874851 -78162307 - AluJo SINE Alu -17 295 2 445 72 84 48 chr3 139875216 139875239 -78161919 - AluSc SINE Alu -217 92 71 1838 94 0 4 chr3 139875239 139875474 -78161684 - AluSg SINE Alu -17 293 60 1107 158 98 122 chr3 139875474 139875935 -78161223 - LTR7 LTR ERV1 0 450 1 445 72 84 48 chr3 139875935 139875993 -78161165 - AluSc SINE Alu -237 72 7 604 255 122 10 chr3 139876041 139876237 -78160921 + MIR SINE MIR 4 221 -41 376 312 104 0 chr3 139876563 139876736 -78160422 + MIR SINE MIR 1 191 -71 663 242 95 0 chr3 139876807 139876997 -78160161 + MER20 DNA MER1_type 5 212 -7 21 0 0 0 chr3 139877056 139877077 -78160081 + AT_rich Low_complexity Low_complexity 1 21 0 2384 81 3 3 chr3 139877108 139877405 -78159753 - AluSp SINE Alu -16 297 1 293 276 153 18 chr3 139877690 139877853 -78159305 - MIR SINE MIR -46 216 32 2433 94 0 0 chr3 139877955 139878262 -78158896 + AluY SINE Alu 1 307 -4 708 256 35 10 chr3 139878512 139878715 -78158443 + MER3 DNA MER1_type 2 209 0 530 250 45 0 chr3 139878721 139878853 -78158305 + MER5B DNA MER1_type 12 149 -29 2008 118 75 55 chr3 139879426 139879865 -78157293 - LTR7 LTR ERV1 -2 448 1 2476 79 45 13 chr3 139879865 139880245 -78156913 - HERVH LTR ERV1 0 7713 7322 1330 124 23 9 chr3 139880243 139880460 -78156698 - HERVH LTR ERV1 -1894 5819 5600 * 3717 121 2 7 chr3 139880536 139881096 -78156062 - HERVH LTR ERV1 -2669 5044 4488 3153 110 25 0 chr3 139881098 139881580 -78155578 - HERVH LTR ERV1 -3720 3993 3500 879 135 20 0 chr3 139881579 139881727 -78155431 - HERVH LTR ERV1 -4423 3290 3140 * 11517 84 21 14 chr3 139881721 139884572 -78152586 - HERVH LTR ERV1 -4726 2987 3 2060 118 88 51 chr3 139884576 139885008 -78152150 - LTR7 LTR ERV1 -2 448 1 1050 204 133 37 chr3 139885233 139885585 -78151573 - HAL1 LINE L1 -698 1809 1424 2298 120 3 0 chr3 139885588 139885897 -78151261 - AluSp SINE Alu -3 310 1 2017 148 0 0 chr3 139885918 139886202 -78150956 - AluJb SINE Alu -23 289 6 583 182 85 173 chr3 139886267 139886596 -78150562 - L1MD2 LINE L1 -18 6224 5925 1278 194 119 51 chr3 139886596 139887009 -78150149 + MLT1C LTR MaLR 1 441 -26 323 173 0 53 chr3 139887023 139887098 -78150060 - L1MD2 LINE L1 -430 5929 5859 * 933 157 68 21 chr3 139887097 139887333 -78149825 - L1MDa LINE L1 -3918 2622 2376 579 171 193 14 chr3 139887450 139887590 -78149568 - Charlie1b DNA MER1_type -227 296 132 1818 123 58 27 chr3 139887634 139887926 -78149232 - AluSx SINE Alu -11 301 1 1752 198 0 10 chr3 139888031 139888345 -78148813 + AluJb SINE Alu 1 311 -1 27 0 0 0 chr3 139888345 139888372 -78148786 + AT_rich Low_complexity Low_complexity 1 27 0 2164 122 7 0 chr3 139889002 139889297 -78147861 + AluSx SINE Alu 1 297 -15 1936 153 7 10 chr3 139889432 139889733 -78147425 - AluSx SINE Alu -7 305 6 1406 160 91 0 chr3 139889736 139889967 -78147191 - AluJb SINE Alu -28 284 33 420 239 38 0 chr3 139889976 139890080 -78147078 - L1MC4 LINE L1 -1139 6646 6571 415 271 154 11 chr3 139890077 139890265 -78146893 + L1M4 LINE L1 3014 3228 -2918 * 1707 167 27 10 chr3 139890286 139890579 -78146579 + AluJo SINE Alu 1 298 -14 189 0 0 0 chr3 139890924 139890945 -78146213 + (CA)n Simple_repeat Simple_repeat 2 22 0 204 311 159 0 chr3 139891582 139891714 -78145444 - MIR SINE MIR -90 172 20 187 318 59 0 chr3 139892131 139892216 -78144942 + MIR SINE MIR 60 149 -113 2228 75 4 0 chr3 139892796 139893062 -78144096 - AluSp SINE Alu -46 267 1 2069 145 7 3 chr3 139893064 139893374 -78143784 - AluSx SINE Alu -1 311 1 331 172 0 31 chr3 139893374 139893438 -78143720 - AluJo SINE Alu -156 146 85 2365 94 3 3 chr3 139893973 139894282 -78142876 + AluSp SINE Alu 1 309 -4 545 165 0 10 chr3 139894282 139894379 -78142779 + AluJb SINE Alu 204 299 -13 458 274 76 48 chr3 139894794 139894990 -78142168 - L1M4 LINE L1 -763 5383 5171 2118 163 100 28 chr3 139894990 139895420 -78141738 + MER65C LTR ERV1 1 461 0 458 274 76 48 chr3 139895420 139895580 -78141578 - L1M4 LINE L1 -975 5171 5017 1486 145 7 51 chr3 139895596 139895872 -78141286 + AluJb SINE Alu 35 298 -14 2082 86 43 14 chr3 139895876 139896156 -78141002 + AluYa5 SINE Alu 7 294 -17 377 269 57 14 chr3 139896163 139896304 -78140854 + L1MD2 LINE L1 6167 6313 -46 1876 144 27 10 chr3 139896318 139896617 -78140541 + AluSx SINE Alu 1 304 -8 647 146 7 44 chr3 139896617 139896754 -78140404 + L1MDa LINE L1 1310 1441 -5099 1498 163 39 39 chr3 139896754 139897060 -78140098 + AluY SINE Alu 1 306 -5 628 134 126 0 chr3 139897061 139897180 -78139978 - LTR14 LTR ERVK -414 134 1 1646 142 37 20 chr3 139897210 139897506 -78139652 + MER51D LTR ERV1 357 657 0 20089 82 19 11 chr3 139897506 139900318 -78136840 + HERVL LTR ERVL 2838 5764 0 638 188 102 65 chr3 139900318 139900346 -78136812 + Ricksha DNA DNA 352 386 -868 322 246 25 8 chr3 139900473 139900591 -78136567 - L1M4 LINE L1 -1622 4524 4405 29 28 0 0 chr3 139900727 139900763 -78136395 + AT_rich Low_complexity Low_complexity 1 36 0 502 264 26 61 chr3 139900812 139900902 -78136256 - L1M4 LINE L1 -3090 3056 2964 2392 112 0 0 chr3 139900902 139901206 -78135952 - AluSx SINE Alu -8 304 1 502 264 26 61 chr3 139901206 139901425 -78135733 - L1M4 LINE L1 -3182 2964 2758 973 243 132 48 chr3 139901440 139901936 -78135222 - MER77 LTR ERV1 -6 599 175 1647 92 4 35 chr3 139902109 139902336 -78134822 - AluSg/x SINE Alu -16 296 77 2391 73 7 3 chr3 139902347 139902648 -78134510 - AluSg SINE Alu -7 303 2 2016 181 54 50 chr3 139902648 139902960 -78134198 - L1MB7 LINE L1 -43 6141 5832 2335 97 0 3 chr3 139902960 139903268 -78133890 - AluSq SINE Alu -6 307 1 2016 181 54 50 chr3 139903268 139903355 -78133803 - L1MB7 LINE L1 -352 5832 5747 2003 148 6 16 chr3 139903355 139903666 -78133492 - AluJb SINE Alu -4 308 1 2016 181 54 50 chr3 139903666 139903762 -78133396 - L1MB7 LINE L1 -437 5747 5643 296 311 46 33 chr3 139905508 139905659 -78131499 + MIR SINE MIR 110 262 0 246 355 65 0 chr3 139905650 139905757 -78131401 + L2 LINE L2 3172 3285 -28 * 489 279 173 4 chr3 139906070 139906342 -78130816 + L1MD2 LINE L1 544 861 -5258 656 268 29 14 chr3 139906375 139906584 -78130574 + HAL1 LINE L1 181 392 -2115 1505 224 31 28 chr3 139906641 139907066 -78130092 + L1MD2 LINE L1 4437 4862 -1267 842 191 5 53 chr3 139907094 139907283 -78129875 + AluJo SINE Alu 117 296 -16 779 197 9 34 chr3 139907285 139907518 -78129640 + L1MD2 LINE L1 4981 5207 -922 315 186 12 23 chr3 139907522 139907608 -78129550 + L1MD2 LINE L1 5171 5255 -874 22 0 0 0 chr3 139907620 139907642 -78129516 + AT_rich Low_complexity Low_complexity 1 22 0 1234 193 0 100 chr3 139907644 139907955 -78129203 - AluSp SINE Alu -29 284 5 2328 110 0 0 chr3 139907964 139908265 -78128893 - AluSx SINE Alu -11 301 1 2768 231 46 51 chr3 139908265 139909121 -78128037 + L1MD2 LINE L1 5245 6095 -247 1824 172 14 3 chr3 139909122 139909418 -78127740 - AluJb SINE Alu -13 299 1 2064 202 139 15 chr3 139909418 139909476 -78127682 - L1MB4 LINE L1 -306 5874 5825 2363 80 0 3 chr3 139909476 139909765 -78127393 - AluSc SINE Alu -21 288 1 2064 202 139 15 chr3 139909765 139910636 -78126522 - L1MB4 LINE L1 -355 5825 4832 228 297 117 8 chr3 139911541 139911669 -78125489 - Charlie8 DNA MER1_type -2236 181 40 1366 75 32 5 chr3 139911733 139911921 -78125237 - AluY SINE Alu -6 305 113 1386 87 11 5 chr3 139912081 139912266 -78124892 - AluY SINE Alu -124 187 2 630 224 34 15 chr3 139912267 139912472 -78124686 - L1MB4 LINE L1 -1551 4595 4387 2281 82 3 20 chr3 139912497 139912800 -78124358 - AluY SINE Alu -13 298 1 650 109 10 0 chr3 139912800 139912901 -78124257 + L1MB7 LINE L1 6022 6123 -61 1257 167 0 20 chr3 139912901 139913105 -78124053 - AluJb SINE Alu -23 289 90 373 85 0 17 chr3 139913114 139913173 -78123985 + L1MB7 LINE L1 6111 6168 -16 229 163 23 0 chr3 139913173 139913216 -78123942 + Charlie5 DNA MER1_type 2542 2585 -27 354 318 47 16 chr3 139913973 139914102 -78123056 + L2 LINE L2 3136 3268 -4 535 262 157 29 chr3 139914331 139914644 -78122514 + MLT1K LTR MaLR 146 498 -90 2357 73 0 44 chr3 139915225 139915541 -78121617 + AluY SINE Alu 1 302 -9 2359 216 81 13 chr3 139915541 139916237 -78120921 + L1M4 LINE L1 4592 5334 -812 724 182 0 38 chr3 139916244 139916376 -78120782 + FLAM_C SINE Alu 2 128 -15 455 230 95 0 chr3 139916384 139916532 -78120626 + L1M4 LINE L1 5328 5489 -689 875 228 186 0 chr3 139916876 139917214 -78119944 - MER74A LTR ERVL -27 531 131 1541 141 96 48 chr3 139917214 139917505 -78119653 + AluJo SINE Alu 1 305 -7 262 288 85 34 chr3 139917678 139917796 -78119362 + L2 LINE L2 3010 3133 -180 * 384 253 150 4 chr3 139917780 139918013 -78119145 + L2 LINE L2 2694 2960 -354 227 236 73 57 chr3 139918030 139918153 -78119005 + L2 LINE L2 3171 3295 -18 390 360 40 5 chr3 139918203 139918403 -78118755 - L2 LINE L2 0 3313 3107 251 220 0 0 chr3 139918450 139918500 -78118658 - L2 LINE L2 -339 2975 2926 1955 245 258 40 chr3 139918610 139919678 -78117480 - L2 LINE L2 -697 2617 1317 191 259 129 45 chr3 139919787 139919899 -78117259 + MIR3 SINE MIR 64 180 -28 393 204 0 78 chr3 139919960 139920063 -78117095 - MIR SINE MIR -84 178 84 266 197 184 0 chr3 139920751 139920827 -78116331 - MLT1C LTR MaLR -159 308 219 1893 138 101 37 chr3 139921008 139921334 -78115824 + MER57A LTR ERV1 1 356 -47 2215 116 3 0 chr3 139921334 139921627 -78115531 - AluSx SINE Alu -18 294 1 1893 138 101 37 chr3 139921627 139921676 -78115482 + MER57A LTR ERV1 356 400 -3 329 242 63 11 chr3 139921786 139921881 -78115277 - MIR SINE MIR -43 219 120 487 210 59 59 chr3 139922505 139922691 -78114467 - LTR8 LTR ERV1 -138 553 368 2511 169 108 45 chr3 139922828 139923006 -78114152 + LTR8 LTR ERV1 1 166 -525 180 0 0 0 chr3 139923006 139923026 -78114132 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2511 169 108 45 chr3 139923026 139923497 -78113661 + LTR8 LTR ERV1 166 691 0 1841 63 112 15 chr3 139925030 139925298 -78111860 - AluSq SINE Alu -19 294 1 228 326 11 43 chr3 139925302 139925394 -78111764 + MIR SINE MIR 119 207 -55 317 264 35 11 chr3 139925434 139925521 -78111637 + MIR SINE MIR 61 149 -113 225 273 169 0 chr3 139925715 139925792 -78111366 - MIR SINE MIR -121 141 52 1992 263 251 36 chr3 139925889 139926626 -78110532 + L2 LINE L2 1317 1894 -1420 909 203 0 0 chr3 139926626 139926789 -78110369 - FRAM SINE Alu -3 163 1 1992 263 251 36 chr3 139926789 139927113 -78110045 + L2 LINE L2 1894 2606 -708 1186 162 0 13 chr3 139927686 139927952 -78109206 - AluJb SINE Alu 0 312 1 2538 72 10 0 chr3 139927959 139928265 -78108893 - AluSg SINE Alu -1 309 1 204 350 87 0 chr3 139928820 139928923 -78108235 - MIR SINE MIR -78 184 73 24 53 0 0 chr3 139929223 139929261 -78107897 + AT_rich Low_complexity Low_complexity 1 38 0 475 258 161 46 chr3 139929532 139929792 -78107366 - MER5C DNA MER1_type -1 323 34 301 207 0 0 chr3 139929927 139929985 -78107173 - Charlie1 DNA MER1_type -56 2705 2648 182 36 0 36 chr3 139929988 139930016 -78107142 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 553 260 75 0 chr3 139930019 139930165 -78106993 - FAM SINE Alu -18 157 1 454 192 0 10 chr3 139930299 139930403 -78106755 - L1M4 LINE L1 -968 5178 5076 379 182 39 0 chr3 139930899 139930976 -78106182 - L1ME1 LINE L1 -73 6093 6014 321 221 47 12 chr3 139930979 139931065 -78106093 + L1ME4a LINE L1 5959 6047 -74 1675 122 0 0 chr3 139931598 139931819 -78105339 + AluSg/x SINE Alu 84 304 -8 536 358 75 7 chr3 139931823 139932102 -78105056 - L1M4c LINE L1 -4750 1634 1337 * 852 243 75 30 chr3 139932093 139932488 -78104670 + L1ME1 LINE L1 5757 6333 -1 734 146 62 0 chr3 139932714 139932844 -78104314 - FRAM SINE Alu -19 157 20 430 277 0 17 chr3 139933090 139933209 -78103949 - L1ME3A LINE L1 -15 6155 6039 1826 182 3 13 chr3 139933240 139933548 -78103610 + AluJo SINE Alu 1 305 -7 303 188 43 0 chr3 139934075 139934144 -78103014 - L1MC4 LINE L1 -1061 6981 6910 481 226 9 0 chr3 139934379 139934485 -78102673 + MER20 DNA MER1_type 113 219 0 368 241 82 103 chr3 139934616 139934710 -78102448 + L1ME4a LINE L1 5931 6025 -96 2088 146 3 3 chr3 139934710 139935011 -78102147 - AluJo SINE Alu -11 301 1 368 241 82 103 chr3 139935011 139935049 -78102109 + L1ME4a LINE L1 6025 6062 -59 2407 109 0 0 chr3 139935049 139935352 -78101806 - AluSx SINE Alu -9 303 1 368 241 82 103 chr3 139935352 139935413 -78101745 + L1ME4a LINE L1 6062 6121 0 1748 102 45 4 chr3 139937370 139937615 -78099543 - AluSc SINE Alu -12 297 43 339 274 42 0 chr3 139937626 139937721 -78099437 + MER58B DNA MER1_type 242 340 -1 2009 128 13 19 chr3 139938026 139938339 -78098819 - AluSx SINE Alu -1 311 1 283 217 62 133 chr3 139938487 139938590 -78098568 - L1MC5 LINE L1 -229 7732 7623 1945 124 41 21 chr3 139938590 139938881 -78098277 - AluJb SINE Alu -15 297 1 283 217 62 133 chr3 139938881 139939017 -78098141 - L1MC5 LINE L1 -338 7623 7510 301 217 11 11 chr3 139939068 139939160 -78097998 - L1MA8 LINE L1 0 6291 6200 414 0 0 0 chr3 139939705 139939751 -78097407 + (TG)n Simple_repeat Simple_repeat 2 47 0 1902 167 0 0 chr3 139940137 139940419 -78096739 - AluSx SINE Alu -30 282 1 2285 69 45 3 chr3 139940421 139940712 -78096446 - AluY SINE Alu -8 303 1 866 126 0 22 chr3 139940714 139940849 -78096309 - AluJo/FLAM SINE Alu -169 133 2 301 320 100 48 chr3 139941045 139941354 -78095804 + L2 LINE L2 2923 3247 -66 276 30 0 0 chr3 139941360 139941393 -78095765 + (TGGA)n Simple_repeat Simple_repeat 1 33 0 1954 211 56 8 chr3 139941907 139942427 -78094731 - L1MB7 LINE L1 -16 6168 5624 615 158 0 0 chr3 139942431 139942526 -78094632 - AluJ/FLAM SINE Alu -217 95 1 267 259 0 0 chr3 139943473 139943531 -78093627 - MIR SINE MIR -60 148 91 2367 94 0 10 chr3 139945050 139945359 -78091799 + AluSq SINE Alu 1 306 -7 733 120 9 0 chr3 139945367 139945475 -78091683 + AluJb SINE Alu 87 195 -117 22 0 0 0 chr3 139945738 139945760 -78091398 + AT_rich Low_complexity Low_complexity 1 22 0 192 301 41 32 chr3 139950716 139950839 -78086319 - MIR SINE MIR -132 130 7 260 71 48 0 chr3 139951215 139951257 -78085901 + (TATG)n Simple_repeat Simple_repeat 3 46 0 2285 99 0 3 chr3 139951257 139951549 -78085609 - AluSq SINE Alu -22 291 1 2152 122 0 26 chr3 139951629 139951933 -78085225 - AluSx SINE Alu -16 296 1 405 276 99 36 chr3 139954982 139955174 -78081984 - MIR3 SINE MIR -1 207 4 436 280 94 92 chr3 139957696 139958281 -78078877 + HAL1 LINE L1 979 1529 -978 2156 129 0 10 chr3 139958379 139958681 -78078477 + AluSx SINE Alu 1 299 -13 2254 119 13 0 chr3 139959132 139959435 -78077723 - AluSp SINE Alu -6 307 1 382 271 96 45 chr3 139959452 139959744 -78077414 + L1M4 LINE L1 2215 2521 -3625 320 263 170 0 chr3 139960208 139960315 -78076843 + L1ME LINE L1 637 724 -5346 2052 146 3 3 chr3 139960315 139960616 -78076542 + AluSx SINE Alu 3 303 -9 320 263 170 0 chr3 139960616 139960755 -78076403 + L1ME LINE L1 724 925 -5145 3615 104 24 51 chr3 139960764 139961387 -78075771 + LTR14B LTR ERVK 3 608 0 1120 124 23 0 chr3 139961387 139961564 -78075594 + HERVK14 LTR ERVK 1 181 -5764 * 3049 60 12 2 chr3 139961559 139961961 -78075197 + HERVK14 LTR ERVK 1290 1695 -4250 791 248 84 4 chr3 139962063 139962301 -78074857 - L1M4 LINE L1 -600 5584 5328 671 182 0 38 chr3 139962309 139962441 -78074717 - FLAM_C SINE Alu -15 128 2 2372 212 80 13 chr3 139962448 139963144 -78074014 - L1M4 LINE L1 -812 5334 4589 2249 107 13 0 chr3 139963144 139963443 -78073715 - AluSx SINE Alu -9 303 1 382 271 96 45 chr3 139963460 139963752 -78073406 + L1ME LINE L1 2149 2455 -3625 320 263 170 0 chr3 139964216 139964323 -78072835 + L1ME LINE L1 637 724 -5346 2052 146 3 3 chr3 139964323 139964624 -78072534 + AluSx SINE Alu 3 303 -9 320 263 170 0 chr3 139964624 139964763 -78072395 + L1ME LINE L1 724 925 -5145 3366 117 26 53 chr3 139964772 139965395 -78071763 + LTR14B LTR ERVK 3 608 0 1120 124 23 0 chr3 139965395 139965572 -78071586 + HERVK14 LTR ERVK 1 181 -5764 * 8528 75 12 11 chr3 139965567 139966258 -78070900 + HERVK14 LTR ERVK 1290 1984 -3961 2419 67 3 17 chr3 139966258 139966556 -78070602 + AluY SINE Alu 2 295 -16 8528 75 12 11 chr3 139966556 139967013 -78070145 + HERVK14 LTR ERVK 1984 2439 -3506 3314 71 24 66 chr3 139967007 139967584 -78069574 + HERVK14 LTR ERVK 5103 5572 -373 * 1292 153 24 0 chr3 139967586 139967614 -78069544 + MER41C-int LTR ERV1 5733 5946 0 1418 61 22 0 chr3 139967614 139967795 -78069363 + HERVK14 LTR ERVK 5575 5759 -186 357 159 0 18 chr3 139967795 139967870 -78069288 + MER41C LTR ERV1 1 61 -493 416 38 0 0 chr3 139967870 139967923 -78069235 + HERVK14 LTR ERVK 5835 5887 -58 954 319 6 9 chr3 139967988 139968317 -78068841 + HERVK14 LTR ERVK 4928 5255 -7 3824 106 6 64 chr3 139968323 139968632 -78068526 + LTR14B LTR ERVK 3 257 -351 2374 90 3 19 chr3 139968632 139968943 -78068215 - AluSp SINE Alu -7 306 1 3824 106 6 64 chr3 139968943 139969276 -78067882 + LTR14B LTR ERVK 257 608 0 2040 135 6 43 chr3 139969311 139969660 -78067498 - MER1B DNA MER1_type -1 336 1 540 248 111 38 chr3 139969665 139970148 -78067010 + L1ME LINE L1 990 1447 -4633 333 216 81 54 chr3 139970274 139970422 -78066736 + L1ME LINE L1 5222 5373 -723 1765 135 15 33 chr3 139970423 139970697 -78066461 + AluSx SINE Alu 1 269 -43 362 248 0 92 chr3 139970697 139970850 -78066308 + L1M4 LINE L1 4051 4189 -1957 1155 204 61 72 chr3 139970850 139971010 -78066148 + MLT1B LTR MaLR 1 161 -229 2294 110 0 0 chr3 139971010 139971302 -78065856 + AluSc SINE Alu 1 292 -17 1155 204 61 72 chr3 139971302 139971504 -78065654 + MLT1B LTR MaLR 161 359 -31 2425 84 0 10 chr3 139971635 139971944 -78065214 + AluSq SINE Alu 1 306 -7 733 120 9 0 chr3 139971952 139972060 -78065098 + AluJb SINE Alu 87 195 -117 22 0 0 0 chr3 139972323 139972345 -78064813 + AT_rich Low_complexity Low_complexity 1 22 0 5897 73 45 62 chr3 139974221 139975894 -78061264 + SVA Other Other 5 868 -520 6759 65 15 50 chr3 139975911 139976899 -78060259 + SVA Other Other 433 1386 0 3431 176 63 36 chr3 139976910 139977407 -78059751 + L1MDa LINE L1 1369 1900 -4640 2279 123 7 0 chr3 139977407 139977715 -78059443 + AluSx SINE Alu 1 310 -2 3431 176 63 36 chr3 139977715 139978094 -78059064 + L1MDa LINE L1 1900 2268 -4272 395 273 20 23 chr3 139978198 139978373 -78058785 + L1MA7 LINE L1 5978 6132 -159 259 282 178 11 chr3 139982518 139982692 -78054466 + L2 LINE L2 2939 3141 -172 1126 139 0 0 chr3 139986529 139986702 -78050456 + THE1B LTR MaLR 1 173 -191 235 259 102 19 chr3 139986767 139986875 -78050283 + L2 LINE L2 3026 3142 -171 1353 157 105 70 chr3 139987068 139987496 -78049662 + LTR7 LTR ERV1 1 443 -7 1946 186 52 25 chr3 139987503 139987950 -78049208 + HERVH LTR ERV1 1 459 -7254 3787 223 9 41 chr3 139988010 139989919 -78047239 + HERVH LTR ERV1 801 2322 -4725 4130 130 9 14 chr3 139990419 139991117 -78046041 + HERVH LTR ERV1 2137 2830 -4883 10283 117 8 42 chr3 139991117 139992832 -78044326 + HERVH LTR ERV1 3357 5013 -2700 2681 101 21 12 chr3 139992842 139993269 -78043889 + HERVH LTR ERV1 7283 7713 0 1233 183 99 57 chr3 139993269 139993691 -78043467 + LTR7 LTR ERV1 1 440 -10 1703 160 27 0 chr3 139994014 139994308 -78042850 + HERVL LTR ERVL 2540 2841 -2813 1465 136 61 7 chr3 139994333 139994610 -78042548 + MER51D LTR ERV1 5 296 -361 1572 91 26 0 chr3 139994610 139994841 -78042317 - LTR14 LTR ERVK 0 548 312 1538 154 110 65 chr3 139994841 139995270 -78041888 + LTR7 LTR ERV1 1 448 -2 18978 97 21 23 chr3 139995272 139998269 -78038889 + HERVH LTR ERV1 1 2992 -4721 830 167 7 0 chr3 139998255 139998405 -78038753 + HERVH LTR ERV1 3140 3290 -4423 * 3083 121 18 6 chr3 139998395 139998891 -78038267 + HERVH LTR ERV1 3492 3993 -3720 4041 138 23 2 chr3 139998894 139999538 -78037620 + HERVH LTR ERV1 4489 5146 -2567 1246 132 28 5 chr3 139999542 139999755 -78037403 + HERVH LTR ERV1 5600 5817 -1896 656 209 33 0 chr3 139999924 140000077 -78037081 + MLT1B LTR MaLR 233 390 0 230 330 21 0 chr3 140000943 140001040 -78036118 + (TTAGGG)n Simple_repeat Simple_repeat 6 104 0 1834 121 61 4 chr3 140001072 140001336 -78035822 + AluSx SINE Alu 19 297 -15 288 0 0 0 chr3 140002005 140002037 -78035121 + (TG)n Simple_repeat Simple_repeat 1 32 0 2035 136 0 0 chr3 140002037 140002318 -78034840 - AluSx SINE Alu -31 281 1 1808 29 10 10 chr3 140002592 140002823 -78034335 + SVA Other Other 1178 1386 0 285 29 0 0 chr3 140005406 140005440 -78031718 + (TG)n Simple_repeat Simple_repeat 1 34 0 276 239 120 0 chr3 140006086 140006178 -78030980 + Charlie8 DNA MER1_type 121 223 -2194 24 39 0 0 chr3 140006641 140006667 -78030491 + GC_rich Low_complexity Low_complexity 1 26 0 205 254 36 18 chr3 140007089 140007144 -78030014 - L2 LINE L2 -25 3288 3233 1945 119 0 0 chr3 140007254 140007506 -78029652 + AluSq SINE Alu 1 252 -61 1031 178 85 66 chr3 140007506 140007799 -78029359 - L1MB8 LINE L1 -5 6173 5914 2051 153 3 0 chr3 140007799 140008099 -78029059 - AluJo SINE Alu -9 303 3 1031 178 85 66 chr3 140008099 140008311 -78028847 - L1MB8 LINE L1 -264 5914 5708 807 233 0 0 chr3 140008393 140008539 -78028619 + FRAM SINE Alu 16 161 -15 2431 80 3 3 chr3 140008598 140008897 -78028261 - AluSq SINE Alu -14 299 1 947 210 67 89 chr3 140008897 140009269 -78027889 + MLT1A2 LTR MaLR 7 370 -4 2304 97 10 10 chr3 140009423 140009733 -78027425 + AluSg SINE Alu 1 310 0 316 287 107 70 chr3 140009765 140010009 -78027149 + L1M4 LINE L1 4754 5006 -1140 330 268 96 89 chr3 140011203 140011281 -78025877 - MIR SINE MIR -70 192 116 2261 108 0 10 chr3 140011281 140011595 -78025563 - AluSx SINE Alu -1 311 1 330 268 96 89 chr3 140011595 140011673 -78025485 - MIR SINE MIR -146 116 35 304 281 39 46 chr3 140012772 140012925 -78024233 - MIR3 SINE MIR -27 181 30 254 269 30 0 chr3 140013526 140013593 -78023565 + L1ME3 LINE L1 6027 6095 -67 1753 113 8 0 chr3 140013773 140014011 -78023147 + AluSp SINE Alu 56 295 -18 190 200 60 0 chr3 140014503 140014553 -78022605 - L2 LINE L2 -6 3307 3255 749 132 0 39 chr3 140015163 140015292 -78021866 - FRAM SINE Alu 0 176 53 338 212 39 106 chr3 140015636 140015815 -78021343 + MER53 DNA DNA 2 168 -21 1909 153 3 3 chr3 140017048 140017330 -78019828 + AluJb SINE Alu 1 282 -30 1273 173 153 8 chr3 140017548 140017803 -78019355 - AluJo SINE Alu -20 292 1 211 185 148 0 chr3 140017842 140017896 -78019262 - MIR SINE MIR -130 78 17 2680 33 0 0 chr3 140017961 140018260 -78018898 + AluY SINE Alu 1 299 -12 535 284 155 17 chr3 140018966 140019205 -78017953 + L2 LINE L2 2990 3261 -52 459 300 139 54 chr3 140019536 140019759 -78017399 + MIR SINE MIR 13 254 -8 1343 82 44 16 chr3 140020468 140020558 -78016600 + AluSg SINE Alu 41 127 -183 2201 88 0 14 chr3 140020558 140020692 -78016466 + AluSg SINE Alu 1 135 -196 2404 86 7 0 chr3 140020692 140020994 -78016164 + AluY SINE Alu 2 305 -6 2201 88 0 14 chr3 140020994 140021194 -78015964 + AluSg SINE Alu 135 331 0 1343 82 44 16 chr3 140021194 140021284 -78015874 + AluSg SINE Alu 127 227 -83 2228 131 0 3 chr3 140021304 140021617 -78015541 + AluSx SINE Alu 1 312 0 1896 153 13 3 chr3 140022570 140022871 -78014287 + AluSq SINE Alu 1 304 -9 192 40 0 0 chr3 140023085 140023110 -78014048 + (TTG)n Simple_repeat Simple_repeat 1 25 0 368 273 183 23 chr3 140023242 140023564 -78013594 + L1ME4a LINE L1 4735 6048 -73 875 117 44 15 chr3 140024122 140024259 -78012899 + FRAM SINE Alu 17 157 -19 1180 136 109 15 chr3 140024259 140024524 -78012634 + L1MB4 LINE L1 5864 6153 -27 428 0 0 19 chr3 140026417 140026470 -78010688 + (CA)n Simple_repeat Simple_repeat 2 53 0 1296 216 29 32 chr3 140026690 140027085 -78010073 - MLT2B3 LTR ERVL 0 554 164 612 121 30 0 chr3 140028209 140028308 -78008850 + L1MB1 LINE L1 6022 6123 -45 567 154 192 0 chr3 140028311 140028415 -78008743 + FLAM_C SINE Alu 2 125 -18 287 226 78 35 chr3 140028424 140028539 -78008619 + L1MA10 LINE L1 6115 6234 -100 225 280 75 55 chr3 140028724 140028924 -78008234 + L1MEd LINE L1 1054 1257 -4862 2201 96 10 7 chr3 140029568 140029894 -78007264 - AluSc SINE Alu 0 309 1 1603 96 12 29 chr3 140029896 140030136 -78007022 - AluSx SINE Alu -15 297 62 418 195 58 0 chr3 140030261 140030348 -78006810 - FRAM/FAM SINE Alu -87 89 1 339 285 163 49 chr3 140030350 140030638 -78006520 + L1ME LINE L1 5083 5403 -743 2424 93 3 0 chr3 140030728 140031028 -78006130 + AluSp SINE Alu 1 301 -12 250 196 54 0 chr3 140031474 140031530 -78005628 + L2 LINE L2 3187 3245 -27 192 347 54 69 chr3 140031533 140031810 -78005348 + L3 LINE CR1 1298 1570 -7 2388 100 0 0 chr3 140031891 140032191 -78004967 + AluSx SINE Alu 1 300 -12 240 206 9 0 chr3 140032208 140032275 -78004883 + L1MB7 LINE L1 4878 4946 -1200 306 233 35 93 chr3 140032305 140032426 -78004732 - L1M4 LINE L1 -1801 4345 4232 453 248 25 18 chr3 140033442 140033602 -78003556 + LTR43 LTR ERV1 153 465 -214 27 0 0 0 chr3 140033818 140033845 -78003313 + AT_rich Low_complexity Low_complexity 1 27 0 355 349 40 27 chr3 140034048 140034197 -78002961 + L1ME LINE L1 5626 5776 -345 252 0 0 0 chr3 140034430 140034458 -78002700 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1199 91 0 0 chr3 140035031 140035206 -78001952 + HERVH LTR ERV1 7429 7603 -110 875 143 60 125 chr3 140035206 140035542 -78001616 + LTR7 LTR ERV1 135 448 -2 1397 94 10 0 chr3 140035544 140035736 -78001422 - LTR14 LTR ERVK -232 316 123 2325 72 7 10 chr3 140035738 140036028 -78001130 + AluY SINE Alu 1 289 -22 240 164 104 112 chr3 140036129 140036263 -78000895 - LTR14 LTR ERVK -414 134 2 2217 197 38 60 chr3 140036865 140037471 -77999687 + L1MB7 LINE L1 5374 5916 -268 1570 188 46 9 chr3 140037471 140037796 -77999362 + MER1B DNA MER1_type 1 337 0 2217 197 38 60 chr3 140037796 140037853 -77999305 + L1MB7 LINE L1 5916 5973 -211 875 154 48 24 chr3 140038007 140038215 -77998943 - MLT1B LTR MaLR -149 241 29 401 234 219 23 chr3 140038456 140038584 -77998574 - MER5B DNA MER1_type -16 162 10 917 240 30 27 chr3 140038695 140038995 -77998163 + AluY SINE Alu 1 301 0 554 196 0 10 chr3 140039273 140039375 -77997783 - AluJb SINE Alu -78 234 134 2174 125 0 10 chr3 140039375 140039679 -77997479 - AluSx SINE Alu -11 301 1 377 269 57 14 chr3 140039693 140039834 -77997324 - L1MD2 LINE L1 -46 6313 6167 1688 104 47 29 chr3 140039841 140040119 -77997039 - AluYa5 SINE Alu -18 293 11 4450 212 25 6 chr3 140091590 140092594 -77944564 + L1P LINE L1 1498 2520 -3626 405 235 39 20 chr3 140093572 140093674 -77943484 + L2 LINE L2 3168 3271 -1 292 259 189 43 chr3 140093749 140093934 -77943224 - MLT1L LTR MaLR -60 555 344 532 280 203 16 chr3 140094525 140095023 -77942135 + L2 LINE L2 2724 3308 -5 1599 216 92 25 chr3 140095265 140095709 -77941449 - MER74B LTR ERVL -93 529 56 2286 174 34 58 chr3 140095717 140096247 -77940911 - Tigger6a DNA MER2_type -306 777 261 229 274 14 14 chr3 140096649 140096722 -77940436 - MIR3 SINE MIR -49 159 87 225 0 0 0 chr3 140098142 140098167 -77938991 + (A)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr3 140098205 140098227 -77938931 + AT_rich Low_complexity Low_complexity 1 22 0 874 239 0 5 chr3 140098332 140098516 -77938642 + MER69 DNA AcHobo 24 206 -1020 297 265 93 49 chr3 140100611 140100773 -77936385 - MIR SINE MIR -6 256 88 907 203 0 12 chr3 140100900 140101063 -77936095 + FRAM SINE Alu 2 162 -4 2205 145 0 0 chr3 140101168 140101479 -77935679 + AluSx SINE Alu 1 311 -1 368 129 12 106 chr3 140101607 140101637 -77935521 + MER3 DNA MER1_type 133 164 -45 2521 88 0 0 chr3 140101637 140101943 -77935215 - AluSq SINE Alu -7 306 1 368 129 12 106 chr3 140101943 140101997 -77935161 + MER3 DNA MER1_type 164 209 0 265 190 25 89 chr3 140101997 140102034 -77935124 - MER3 DNA MER1_type -161 48 17 228 118 0 0 chr3 140102123 140102157 -77935001 - L2 LINE L2 -16 3297 3264 2035 151 3 0 chr3 140102230 140102529 -77934629 + AluJb SINE Alu 1 300 -12 5075 79 16 4 chr3 140102870 140102921 -77934237 + L1PA14 LINE L1 5137 5186 -975 2366 77 6 13 chr3 140102921 140103233 -77933925 + AluY SINE Alu 1 310 -1 5075 79 16 4 chr3 140103233 140103960 -77933198 + L1PA14 LINE L1 5186 5931 -230 364 248 71 50 chr3 140104132 140104330 -77932828 + L2 LINE L2 3112 3313 0 737 283 67 4 chr3 140104391 140104631 -77932527 + MIR SINE MIR 2 256 -6 236 162 0 0 chr3 140105552 140105589 -77931569 + L1MD2 LINE L1 6086 6122 -237 396 235 20 10 chr3 140105649 140105751 -77931407 - L1M4 LINE L1 -3642 2504 2402 1354 166 0 0 chr3 140105788 140106005 -77931153 - AluSg/x SINE Alu 0 312 96 2963 159 35 29 chr3 140106013 140106560 -77930598 + L1MCa LINE L1 335 884 -5542 186 43 0 0 chr3 140106703 140106726 -77930432 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 6664 91 15 6 chr3 140106731 140107747 -77929411 - SVA Other Other -839 1369 432 2457 78 0 0 chr3 140108999 140109293 -77927865 - AluY SINE Alu -17 294 1 2352 82 7 0 chr3 140109297 140109588 -77927570 - AluSp SINE Alu -20 293 1 1200 283 56 30 chr3 140109611 140110276 -77926882 + L1MCa LINE L1 1090 1771 -4657 304 224 0 0 chr3 140110278 140110336 -77926822 + AluJ/monomer SINE Alu 234 291 -11 870 170 0 0 chr3 140111866 140112001 -77925157 + pTR5 LTR ERV1 261 395 -2043 2222 100 17 0 chr3 140112117 140112406 -77924752 - AluSg SINE Alu -16 294 1 370 275 137 60 chr3 140113302 140113535 -77923623 + MLT1L LTR MaLR 204 454 -161 850 189 9 60 chr3 140113539 140113756 -77923402 - L2 LINE L2 0 3313 3108 592 153 38 104 chr3 140113768 140113951 -77923207 - L2 LINE L2 -506 2808 2638 339 294 106 17 chr3 140114077 140114257 -77922901 + MIR SINE MIR 57 252 -10 27 87 0 0 chr3 140114263 140114332 -77922826 + AT_rich Low_complexity Low_complexity 1 69 0 218 188 0 77 chr3 140114332 140114427 -77922731 + (TAA)n Simple_repeat Simple_repeat 1 87 -21 1890 155 18 0 chr3 140114427 140114711 -77922447 + AluSx SINE Alu 1 289 -23 218 188 0 77 chr3 140114711 140114732 -77922426 + (TAA)n Simple_repeat Simple_repeat 87 108 0 313 250 266 0 chr3 140115992 140116116 -77921042 + MIR SINE MIR 49 205 -57 233 214 0 0 chr3 140117510 140117552 -77919606 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 1580 226 59 66 chr3 140118158 140118719 -77918439 - LTR67 LTR ERVL 0 557 1 1761 158 26 0 chr3 140119867 140120139 -77917019 + AluJb SINE Alu 1 279 -33 183 42 0 0 chr3 140120141 140120165 -77916993 + (CAA)n Simple_repeat Simple_repeat 1 24 0 292 309 0 0 chr3 140120453 140120547 -77916611 + MER117 DNA MER1_type 100 193 -4 225 0 0 0 chr3 140120614 140120639 -77916519 + (TG)n Simple_repeat Simple_repeat 1 25 0 898 182 29 0 chr3 140120663 140120833 -77916325 - MER5A DNA MER1_type -1 188 14 735 236 89 35 chr3 140121348 140121606 -77915552 - L1MB7 LINE L1 0 6184 5913 184 235 62 12 chr3 140122832 140122913 -77914245 + MIR SINE MIR 60 144 -118 801 148 0 0 chr3 140123097 140123219 -77913939 - FLAM_C SINE Alu -11 122 1 1077 117 17 34 chr3 140123219 140123398 -77913760 + MER6 DNA MER2_type 690 865 0 291 387 0 0 chr3 140123476 140123595 -77913563 - L2 LINE L2 -15 3257 3139 595 176 17 8 chr3 140124960 140125079 -77912079 - L1MC/D LINE L1 -583 5776 5657 328 239 137 51 chr3 140125078 140125226 -77911932 - L1MC/D LINE L1 -737 5447 5278 * 1971 83 113 0 chr3 140125226 140125492 -77911666 - AluSp SINE Alu -17 296 1 328 239 137 51 chr3 140125492 140125540 -77911618 - L1MC/D LINE L1 -906 5278 5236 2099 98 44 17 chr3 140126255 140126551 -77910607 + AluSq SINE Alu 1 304 -9 939 231 46 38 chr3 140126582 140126950 -77910208 + L1MC5 LINE L1 7515 7885 -76 727 174 16 8 chr3 140126951 140127072 -77910086 + FLAM_C SINE Alu 1 122 -21 2421 50 4 0 chr3 140127146 140127426 -77909732 + AluY SINE Alu 1 281 -30 520 84 0 0 chr3 140127612 140127683 -77909475 + AluSc SINE Alu 155 225 -84 621 217 114 76 chr3 140129089 140129379 -77907779 + LTR37B LTR ERV1 3 303 -165 1007 110 0 0 chr3 140129536 140129672 -77907486 + AluSq/x SINE Alu 1 136 -176 2244 68 4 0 chr3 140129673 140129952 -77907206 + AluSx SINE Alu 1 280 -32 828 110 0 116 chr3 140130140 140130295 -77906863 + AluSg/x SINE Alu 155 291 -19 708 250 12 6 chr3 140130410 140130578 -77906580 + MER5A DNA MER1_type 1 169 -20 294 369 7 14 chr3 140130606 140130747 -77906411 + MIR3 SINE MIR 9 148 -60 905 66 8 0 chr3 140130851 140130973 -77906185 - AluY SINE Alu -1 310 188 1771 101 0 4 chr3 140131079 140131317 -77905841 - AluSx SINE Alu -75 237 1 195 129 0 0 chr3 140131746 140131777 -77905381 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 317 282 73 8 chr3 140131827 140131951 -77905207 + LTR67 LTR ERVL 424 555 -2 316 278 126 20 chr3 140132533 140132684 -77904474 + LTR67 LTR ERVL 99 265 -292 2198 95 0 3 chr3 140134121 140134425 -77902733 - AluSg SINE Alu -7 303 1 1732 156 0 0 chr3 140134842 140135124 -77902034 + AluJo SINE Alu 26 307 -5 1263 271 124 18 chr3 140135262 140135762 -77901396 - L2 LINE L2 -38 3275 2714 181 365 87 29 chr3 140136068 140136276 -77900882 + L2 LINE L2 2824 3043 -229 1663 96 0 25 chr3 140136519 140136759 -77900399 + AluY SINE Alu 62 295 -16 368 239 92 23 chr3 140137242 140137372 -77899786 - MIR SINE MIR -108 154 16 1038 199 0 19 chr3 140137529 140137745 -77899413 - AluJo SINE Alu -17 295 84 750 281 17 43 chr3 140138088 140138323 -77898835 - MIR SINE MIR -1 261 33 233 273 109 79 chr3 140138929 140139103 -77898055 - MIR3 SINE MIR -27 181 10 1946 112 11 4 chr3 140139385 140139653 -77897505 - THE1C LTR MaLR 0 375 106 186 43 0 0 chr3 140139754 140139777 -77897381 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1812 106 26 7 chr3 140139779 140140052 -77897106 - AluSc SINE Alu -31 278 1 872 125 0 0 chr3 140140055 140140183 -77896975 - AluSq/x SINE Alu -181 132 5 1529 168 24 0 chr3 140140425 140140717 -77896441 - AluSp SINE Alu -14 299 1 225 0 0 0 chr3 140140727 140140752 -77896406 + (T)n Simple_repeat Simple_repeat 1 25 0 249 221 183 10 chr3 140141723 140141827 -77895331 + L1M4 LINE L1 4519 4640 -1506 1454 142 98 33 chr3 140141834 140142109 -77895049 - MSTA LTR MaLR 0 428 136 1931 88 0 27 chr3 140142311 140142573 -77894585 + AluSc SINE Alu 36 290 -19 694 267 112 0 chr3 140142602 140142834 -77894324 - MIR SINE MIR -3 259 2 464 313 39 63 chr3 140142835 140143119 -77894039 + L3 LINE CR1 1297 1573 -4 682 126 10 10 chr3 140143916 140144019 -77893139 - AluSg/x SINE Alu -19 293 191 317 196 0 0 chr3 140144120 140144176 -77892982 + MLT1B LTR MaLR 333 388 -2 190 270 20 100 chr3 140144693 140144793 -77892365 - MIR3 SINE MIR 0 208 117 247 377 49 0 chr3 140144991 140145113 -77892045 - MIR3 SINE MIR -14 194 67 706 48 0 0 chr3 140145467 140145551 -77891607 + MER30B DNA MER1_type 1 84 -106 1750 167 13 19 chr3 140145639 140145950 -77891208 + AluJo SINE Alu 1 309 -3 23 0 0 0 chr3 140146008 140146031 -77891127 + AT_rich Low_complexity Low_complexity 1 23 0 819 89 193 0 chr3 140146053 140146188 -77890970 + MER30B DNA MER1_type 70 230 0 2320 81 0 0 chr3 140146300 140146607 -77890551 - AluY SINE Alu -4 307 1 282 192 77 0 chr3 140146857 140146935 -77890223 + L1MB2 LINE L1 5933 6016 -155 1039 226 0 0 chr3 140149269 140149517 -77887641 - L1P LINE L1 -1578 4568 4321 2384 11 0 0 chr3 140149517 140149786 -77887372 - AluYb8 SINE Alu 0 318 50 275 214 68 68 chr3 140151666 140151783 -77885375 + MIR SINE MIR 17 133 -75 513 243 46 7 chr3 140152107 140152259 -77884899 - MER20B DNA MER1_type -61 722 565 201 152 0 0 chr3 140152387 140152420 -77884738 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 1085 92 0 0 chr3 140152460 140152613 -77884545 - AluSp/q SINE Alu -5 308 156 1072 278 72 33 chr3 140152629 140153057 -77884101 - MER20B DNA MER1_type -331 452 8 300 300 20 20 chr3 140153619 140153719 -77883439 + MIR3 SINE MIR 63 162 -46 314 306 130 0 chr3 140153874 140153982 -77883176 - L2 LINE L2 0 3313 3192 204 286 0 18 chr3 140153991 140154047 -77883111 + MIR3 SINE MIR 151 205 -3 847 259 24 5 chr3 140154133 140154338 -77882820 + MIR SINE MIR 18 226 -36 242 311 0 0 chr3 140154563 140154624 -77882534 + L2 LINE L2 3252 3312 -1 937 148 0 0 chr3 140154948 140155090 -77882068 + AluSg/x SINE Alu 141 282 -30 25 0 0 0 chr3 140155124 140155149 -77882009 + AT_rich Low_complexity Low_complexity 1 25 0 2050 176 53 37 chr3 140155293 140155449 -77881709 + MER65C LTR ERV1 1 153 -308 2092 104 7 13 chr3 140155449 140155758 -77881400 - AluSq SINE Alu -6 307 1 2050 176 53 37 chr3 140155758 140156055 -77881103 + MER65C LTR ERV1 153 461 0 865 129 0 0 chr3 140156326 140156450 -77880708 - FLAM_C SINE Alu -9 124 1 273 75 0 0 chr3 140156674 140156714 -77880444 + (TCCCC)n Simple_repeat Simple_repeat 3 42 0 881 269 60 80 chr3 140156851 140157353 -77879805 + L1MEd LINE L1 79 570 -5549 5568 100 25 0 chr3 140157355 140158143 -77879015 + L1PB1 LINE L1 5342 6149 -2 318 195 153 25 chr3 140158220 140158338 -77878820 + L1MEd LINE L1 661 793 -5326 304 270 79 16 chr3 140158452 140158578 -77878580 + L1M4 LINE L1 4944 5077 -1069 385 254 278 5 chr3 140158760 140158842 -77878316 - L2 LINE L2 -162 3151 3093 2148 99 7 0 chr3 140158842 140159135 -77878023 + AluSx SINE Alu 1 295 -17 385 254 278 5 chr3 140159135 140159261 -77877897 - L2 LINE L2 -220 3093 2886 189 277 164 23 chr3 140159284 140159461 -77877697 - L2 LINE L2 -563 2751 2550 282 149 0 0 chr3 140160070 140160117 -77877041 - Alu SINE Alu -3 305 259 2354 76 0 0 chr3 140160649 140160953 -77876205 - AluSx SINE Alu -8 304 1 553 308 61 14 chr3 140161038 140161252 -77875906 - Charlie8 DNA MER1_type -2181 236 13 647 162 35 35 chr3 140161304 140161446 -77875712 - FLAM_C SINE Alu 0 143 2 2064 150 60 15 chr3 140161453 140161852 -77875306 - L1MC1 LINE L1 -16 6317 5901 28 29 0 0 chr3 140162328 140162363 -77874795 + AT_rich Low_complexity Low_complexity 1 35 0 356 294 65 65 chr3 140162811 140163086 -77874072 - L2 LINE L2 -194 3078 2804 234 311 33 0 chr3 140163932 140164022 -77873136 - MIR3 SINE MIR -8 200 108 202 308 39 26 chr3 140164421 140164499 -77872659 - MIR SINE MIR -100 108 30 216 0 0 0 chr3 140164861 140164885 -77872273 + (T)n Simple_repeat Simple_repeat 1 24 0 193 239 0 0 chr3 140164938 140164984 -77872174 - L2 LINE L2 -1 3312 3267 1166 254 64 27 chr3 140165062 140165467 -77871691 + LTR16C LTR ERVL 61 480 -11 258 234 31 0 chr3 140165653 140165717 -77871441 + MER116 DNA Mariner 1 66 -14 1442 163 8 0 chr3 140165813 140166059 -77871099 - AluSx SINE Alu -64 248 1 581 288 103 9 chr3 140166152 140166385 -77870773 - MLT1J LTR MaLR -205 306 52 22 56 0 0 chr3 140166697 140166733 -77870425 + AT_rich Low_complexity Low_complexity 1 36 0 576 290 100 16 chr3 140166781 140167011 -77870147 + MIR SINE MIR 2 251 -11 912 260 27 0 chr3 140167119 140167338 -77869820 - MIR SINE MIR -25 237 13 4177 144 53 65 chr3 140167451 140168361 -77868797 - pTR5 LTR ERV1 0 2606 1524 806 224 65 47 chr3 140168492 140168706 -77868452 - AluJo SINE Alu -92 220 3 237 245 0 0 chr3 140168708 140168757 -77868401 + L1ME1 LINE L1 4845 4893 -1253 1916 203 68 33 chr3 140168807 140168862 -77868296 + L1ME1 LINE L1 5312 5364 -802 1971 122 7 14 chr3 140168862 140169158 -77868000 + AluSx SINE Alu 5 298 -14 1916 203 68 33 chr3 140169158 140169589 -77867569 + L1ME1 LINE L1 5364 5815 -351 816 159 0 22 chr3 140169600 140169738 -77867420 + AluJo SINE Alu 2 136 -176 1079 223 36 33 chr3 140169763 140170112 -77867046 + L1ME1 LINE L1 5822 6166 0 1874 134 7 7 chr3 140170328 140170633 -77866525 - AluSx SINE Alu -5 307 3 1807 158 3 7 chr3 140170655 140170952 -77866206 - AluJb SINE Alu -16 296 1 327 304 111 15 chr3 140171070 140171205 -77865953 + MIR SINE MIR 64 211 -51 329 256 56 0 chr3 140171832 140171922 -77865236 - MIR SINE MIR -66 196 102 226 307 119 51 chr3 140172999 140173175 -77863983 - L2 LINE L2 -164 3108 2921 1350 198 122 49 chr3 140173920 140174386 -77862772 + MER66A LTR ERV1 101 478 0 464 222 30 0 chr3 140174391 140174490 -77862668 - MLT1E2 LTR MaLR -137 489 388 222 277 15 15 chr3 140175744 140175809 -77861349 + MIR3 SINE MIR 123 187 -21 1539 122 8 46 chr3 140175880 140176142 -77861016 + AluSx SINE Alu 56 307 -5 1896 102 31 14 chr3 140176192 140176327 -77860831 + AluSq SINE Alu 1 132 -181 2270 62 0 26 chr3 140176327 140176652 -77860506 + AluY SINE Alu 1 311 0 1896 102 31 14 chr3 140176652 140176809 -77860349 + AluSq SINE Alu 132 298 -15 1974 108 35 0 chr3 140178590 140178876 -77858282 + AluY SINE Alu 1 296 -15 1952 116 0 4 chr3 140178992 140179267 -77857891 + AluSx SINE Alu 1 274 -38 392 164 0 0 chr3 140179267 140179340 -77857818 + (CAGG)n Simple_repeat Simple_repeat 2 74 0 325 0 0 24 chr3 140179340 140179381 -77857777 + (CA)n Simple_repeat Simple_repeat 2 41 0 1861 163 45 9 chr3 140179703 140180035 -77857123 - MER2 DNA MER2_type 0 344 1 212 232 61 24 chr3 140180324 140180406 -77856752 + L2 LINE L2 3221 3305 -8 349 306 50 6 chr3 140181274 140181592 -77855566 + (CTGGGG)n Simple_repeat Simple_repeat 1 332 0 490 266 41 0 chr3 140181597 140181766 -77855392 + G-rich Low_complexity Low_complexity 3 178 0 188 83 0 28 chr3 140181866 140181902 -77855256 + (CCGGG)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr3 140182256 140182277 -77854881 + AT_rich Low_complexity Low_complexity 1 21 0 804 101 0 72 chr3 140182607 140182691 -77854467 + AluSc SINE Alu 1 73 -236 2131 70 20 17 chr3 140182691 140182992 -77854166 + AluY SINE Alu 1 302 -9 804 101 0 72 chr3 140182992 140183046 -77854112 + AluSc SINE Alu 73 129 -180 1837 117 0 30 chr3 140183052 140183352 -77853806 + AluY SINE Alu 3 293 -18 1421 116 0 30 chr3 140183354 140183415 -77853743 + AluSg/x SINE Alu 79 140 -172 2218 90 0 29 chr3 140183415 140183725 -77853433 + AluY SINE Alu 3 303 -8 1421 116 0 30 chr3 140183725 140183895 -77853263 + AluSg/x SINE Alu 140 303 -9 33 43 0 0 chr3 140185359 140185406 -77851752 + GC_rich Low_complexity Low_complexity 1 47 0 795 280 197 30 chr3 140185919 140186377 -77850781 + L3 LINE CR1 670 1231 -346 2389 79 0 0 chr3 140186377 140186682 -77850476 - AluSq SINE Alu -8 305 1 795 280 197 30 chr3 140186682 140186755 -77850403 + L3 LINE CR1 1231 1290 -287 2177 99 10 0 chr3 140187680 140187983 -77849175 + AluSq SINE Alu 1 306 -7 212 91 36 36 chr3 140188085 140188140 -77849018 + CT-rich Low_complexity Low_complexity 3 57 0 338 215 0 0 chr3 140188312 140188377 -77848781 - L1MC5 LINE L1 -1160 6801 6737 532 284 128 79 chr3 140188415 140189225 -77847933 - HAL1 LINE L1 -1572 935 86 1943 155 0 0 chr3 140189227 140189530 -77847628 + AluSx SINE Alu 1 303 -9 189 297 81 0 chr3 140190770 140190844 -77846314 + MIR SINE MIR 66 145 -63 263 105 0 0 chr3 140191455 140191493 -77845665 - tRNA-Gln-CAG tRNA tRNA -37 38 1 1002 143 30 24 chr3 140191653 140191821 -77845337 + AluJo SINE Alu 1 169 -143 223 254 110 59 chr3 140192447 140192565 -77844593 + MIR SINE MIR 29 152 -110 2163 117 3 0 chr3 140192992 140193299 -77843859 + AluSq SINE Alu 1 308 -5 1568 123 146 4 chr3 140193585 140193853 -77843305 + AluSx SINE Alu 1 306 -6 1245 119 0 0 chr3 140193853 140194029 -77843129 + AluSg/x SINE Alu 132 307 -3 22 0 0 0 chr3 140194759 140194781 -77842377 + AT_rich Low_complexity Low_complexity 1 22 0 1230 79 0 6 chr3 140194954 140195118 -77842040 + AluSx SINE Alu 1 163 -149 548 262 105 74 chr3 140195222 140195573 -77841585 - MLT1K LTR MaLR -59 529 168 716 170 106 0 chr3 140196441 140196582 -77840576 + MIR SINE MIR 3 158 -104 317 226 49 29 chr3 140197329 140197431 -77839727 + LTR67 LTR ERVL 437 540 -17 236 342 0 0 chr3 140197523 140197602 -77839556 + MIR SINE MIR 74 152 -56 221 146 83 21 chr3 140197906 140197954 -77839204 - MIR SINE MIR -100 162 112 778 101 0 0 chr3 140198066 140198175 -77838983 + AluSg/x SINE Alu 202 310 0 1058 188 62 7 chr3 140198176 140198473 -77838685 - MSTD LTR MaLR -59 337 1 918 266 154 68 chr3 140198623 140199331 -77837827 - L2 LINE L2 -924 2390 1622 403 278 92 17 chr3 140199576 140199749 -77837409 + MIR SINE MIR 33 218 -44 460 286 111 66 chr3 140199970 140200320 -77836838 - L3 LINE CR1 -3 1574 1209 190 293 164 50 chr3 140200372 140200512 -77836646 - L3 LINE CR1 -601 976 821 337 261 0 67 chr3 140200522 140200641 -77836517 - MLT1K LTR MaLR -73 515 405 1983 126 7 0 chr3 140201280 140201581 -77835577 + AluSx SINE Alu 1 303 -9 771 197 151 0 chr3 140201876 140202153 -77835005 + L2 LINE L2 2689 3010 -303 403 306 69 14 chr3 140202411 140202555 -77834603 - MIR SINE MIR -23 239 88 181 95 24 24 chr3 140203044 140203086 -77834072 + (TCC)n Simple_repeat Simple_repeat 2 43 0 1158 148 0 0 chr3 140203413 140203589 -77833569 - FRAM SINE Alu -1 175 1 1058 263 108 21 chr3 140203978 140204404 -77832754 + MLT1K LTR MaLR 126 588 0 1680 154 3 48 chr3 140204495 140204807 -77832351 - AluJb SINE Alu -14 298 1 352 225 22 22 chr3 140205368 140205457 -77831701 + LTR67 LTR ERVL 80 168 -389 * 591 242 107 22 chr3 140205426 140205604 -77831554 + MLT1L LTR MaLR 197 389 -226 331 161 383 0 chr3 140206003 140206084 -77831074 + MIR SINE MIR 35 146 -116 3249 109 67 0 chr3 140206136 140206602 -77830556 + LOR1a LTR ERV1 1 497 0 2542 122 127 7 chr3 140207160 140207703 -77829455 - LTR12 LTR ERV1 -226 2212 66 267 250 0 0 chr3 140207703 140207755 -77829403 - LTR30 LTR ERV1 -670 52 1 567 203 68 43 chr3 140207941 140208148 -77829010 - Charlie1 DNA MER1_type 0 2761 2550 355 188 29 0 chr3 140208140 140208209 -77828949 + AluYa5 SINE Alu 122 192 -109 * 3573 129 86 68 chr3 140208209 140208986 -77828172 + pTR5 LTR ERV1 749 1539 -899 1625 163 0 0 chr3 140209086 140209343 -77827815 + AluSx SINE Alu 50 306 -6 4125 230 39 20 chr3 140209379 140209905 -77827253 + L1MC4a LINE L1 2402 2916 -3230 1818 140 0 40 chr3 140209905 140210227 -77826931 + AluSx SINE Alu 1 309 -3 4125 230 39 20 chr3 140210227 140210717 -77826441 + L1MC4a LINE L1 2916 3450 -2696 2377 70 0 13 chr3 140210717 140211032 -77826126 + AluY SINE Alu 1 311 0 4125 230 39 20 chr3 140211032 140211288 -77825870 + L1MC4a LINE L1 3450 3700 -2446 267 268 0 24 chr3 140213668 140213750 -77823408 + L2 LINE L2 3191 3270 -43 2278 238 45 5 chr3 140213753 140214372 -77822786 + L1MC4a LINE L1 3682 4325 -1821 1945 101 44 20 chr3 140214376 140214674 -77822484 - AluY SINE Alu -6 305 1 2266 86 0 7 chr3 140215486 140215787 -77821371 - AluSc SINE Alu -10 299 1 342 262 75 56 chr3 140216760 140216974 -77820184 + L1MC4a LINE L1 5733 5950 -1858 288 264 103 0 chr3 140217338 140217425 -77819733 + L1MD2 LINE L1 5564 5659 -505 531 259 168 9 chr3 140217508 140217728 -77819430 + L1ME3A LINE L1 5888 6142 -28 * 1109 211 68 30 chr3 140217726 140217983 -77819175 + L1MD2 LINE L1 5794 6069 -290 1481 181 8 4 chr3 140217983 140218242 -77818916 - AluJo SINE Alu -52 260 1 1109 211 68 30 chr3 140218242 140218321 -77818837 + L1MD2 LINE L1 6069 6143 -216 567 283 21 0 chr3 140218322 140218467 -77818691 + L1MD2 LINE L1 6196 6343 -16 2225 104 0 0 chr3 140219526 140219823 -77817335 + AluSg SINE Alu 1 297 -13 411 245 45 54 chr3 140220294 140220484 -77816674 - L1MC4 LINE L1 -415 7393 7227 293 360 125 0 chr3 140220683 140220819 -77816339 - L2 LINE L2 -1 3271 3119 235 296 40 56 chr3 140222061 140222186 -77814972 + MIR SINE MIR 107 229 -33 228 331 55 48 chr3 140223269 140223414 -77813744 - L2 LINE L2 -19 3253 3108 2249 102 0 28 chr3 140223438 140223760 -77813398 - AluSq SINE Alu 0 313 1 225 0 23 70 chr3 140223761 140223804 -77813354 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 1626 159 0 0 chr3 140223804 140224049 -77813109 - AluSx SINE Alu -28 284 40 2158 82 7 0 chr3 140225194 140225485 -77811673 + AluSg SINE Alu 7 299 -11 1924 94 7 7 chr3 140226749 140227064 -77810094 - AluSg SINE Alu 0 310 1 192 135 0 0 chr3 140228637 140228674 -77808484 + (T)n Simple_repeat Simple_repeat 1 37 0 2290 72 7 39 chr3 140228916 140229223 -77807935 - AluSp SINE Alu -16 297 1 1696 140 77 11 chr3 140229227 140229513 -77807645 - AluSx SINE Alu -5 307 3 308 156 0 0 chr3 140229515 140229560 -77807598 - Alu SINE Alu -254 45 1 2299 99 10 0 chr3 140230572 140230876 -77806282 + AluY SINE Alu 1 307 -4 1781 112 66 0 chr3 140230878 140231136 -77806022 + AluSx SINE Alu 29 303 -9 1185 59 0 0 chr3 140231138 140231273 -77805885 + AluYb8 SINE Alu 3 137 -181 255 258 76 0 chr3 140231611 140231677 -77805481 + MIR SINE MIR 192 262 0 501 241 184 0 chr3 140231678 140231852 -77805306 - MIR SINE MIR -15 247 42 1178 47 0 47 chr3 140232109 140232257 -77804901 - AluY SINE Alu -170 141 1 423 223 11 11 chr3 140232498 140232592 -77804566 - MER5A DNA MER1_type -80 109 16 2549 51 7 0 chr3 140232820 140233116 -77804042 - AluY SINE Alu -13 298 1 253 220 36 0 chr3 140234512 140234598 -77802560 - MIR SINE MIR -76 132 40 1359 65 0 24 chr3 140239373 140239543 -77797615 - AluY SINE Alu -145 166 1 465 259 134 44 chr3 140241300 140241557 -77795601 + HAL1 LINE L1 925 1157 -1350 2193 96 0 0 chr3 140241557 140241829 -77795329 + AluSx SINE Alu 1 272 -40 465 259 134 44 chr3 140241829 140241841 -77795317 + HAL1 LINE L1 1157 1167 -1340 240 35 0 0 chr3 140241841 140241870 -77795288 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 465 259 134 44 chr3 140241870 140242077 -77795081 + HAL1 LINE L1 1167 1445 -1062 1213 216 67 22 chr3 140242090 140242447 -77794711 + HAL1 LINE L1 1528 1900 -607 287 393 53 8 chr3 140242449 140242693 -77794465 + L1MEc LINE L1 43 297 -6099 1622 86 5 14 chr3 140242793 140243002 -77794156 - AluSg SINE Alu -103 207 1 22 56 0 0 chr3 140243135 140243171 -77793987 + AT_rich Low_complexity Low_complexity 1 36 0 2308 113 3 0 chr3 140243406 140243708 -77793450 - AluSp SINE Alu -10 303 1 180 0 0 0 chr3 140244290 140244310 -77792848 + (TTAG)n Simple_repeat Simple_repeat 2 21 0 239 136 0 0 chr3 140244310 140244354 -77792804 - Alu SINE Alu -2 298 255 2349 81 18 0 chr3 140244354 140244639 -77792519 - AluSg SINE Alu -19 291 2 1728 177 28 0 chr3 140244934 140245217 -77791941 + AluJb SINE Alu 1 291 -21 2286 98 0 7 chr3 140245226 140245521 -77791637 + AluSx SINE Alu 1 293 -19 923 196 13 7 chr3 140245521 140245674 -77791484 + AluJb SINE Alu 134 287 -25 2214 125 3 0 chr3 140245680 140245977 -77791181 + AluSx SINE Alu 1 298 -14 34 79 0 0 chr3 140246077 140246153 -77791005 + AT_rich Low_complexity Low_complexity 1 76 0 353 278 220 21 chr3 140246224 140246415 -77790743 + L1ME4a LINE L1 5893 6121 0 24 0 0 0 chr3 140246446 140246470 -77790688 + AT_rich Low_complexity Low_complexity 1 24 0 373 127 0 0 chr3 140246623 140246678 -77790480 + U6 snRNA snRNA 3 57 -50 209 213 0 0 chr3 140246680 140246727 -77790431 + A-rich Low_complexity Low_complexity 1 47 0 315 188 47 24 chr3 140247038 140247123 -77790035 - MER112 DNA MER1_type -31 229 143 192 40 0 0 chr3 140247170 140247195 -77789963 + (TG)n Simple_repeat Simple_repeat 2 26 0 1690 210 0 0 chr3 140247369 140247664 -77789494 - AluJb SINE Alu -15 297 3 2219 122 7 0 chr3 140247680 140247975 -77789183 - AluSx SINE Alu -13 299 3 180 0 0 0 chr3 140248608 140248628 -77788530 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2063 108 0 21 chr3 140248630 140248916 -77788242 - AluSx SINE Alu -31 281 2 2394 75 0 7 chr3 140248946 140249241 -77787917 - AluY SINE Alu -14 297 5 1968 149 7 17 chr3 140249244 140249545 -77787613 - AluJo SINE Alu -14 298 1 271 267 171 12 chr3 140250787 140250950 -77786208 + MIR SINE MIR 13 200 -62 1139 16 0 0 chr3 140251113 140251238 -77785920 - AluY SINE Alu -13 298 174 254 309 176 7 chr3 140251548 140251684 -77785474 - L2 LINE L2 0 3313 3155 195 204 0 0 chr3 140252003 140252052 -77785106 + (CCCG)n Simple_repeat Simple_repeat 2 50 0 264 397 69 6 chr3 140253868 140254042 -77783116 + MLT1K LTR MaLR 108 292 -296 591 186 59 0 chr3 140254796 140254914 -77782244 + MLT1D LTR MaLR 1 125 -380 2397 109 0 3 chr3 140254914 140255226 -77781932 + AluSx SINE Alu 1 311 -1 852 180 24 6 chr3 140255226 140255393 -77781765 + AluSq SINE Alu 134 303 -10 269 260 104 21 chr3 140255706 140255802 -77781356 + MIR SINE MIR 114 217 -45 221 256 165 58 chr3 140256164 140256285 -77780873 - MIR3 SINE MIR -62 146 13 1808 130 111 32 chr3 140256404 140256486 -77780672 + MER44D DNA MER2_type 1 75 -2412 2136 118 0 50 chr3 140256486 140256809 -77780349 + AluSq SINE Alu 1 307 -6 2270 113 0 3 chr3 140256818 140257118 -77780040 + AluSx SINE Alu 1 299 -13 1808 130 111 32 chr3 140257118 140257512 -77779646 + MER44D DNA MER2_type 82 593 -12 25 0 0 0 chr3 140258308 140258333 -77778825 + AT_rich Low_complexity Low_complexity 1 25 0 280 255 10 59 chr3 140258400 140258502 -77778656 + L1MC4a LINE L1 6074 6170 -1638 388 193 150 49 chr3 140258540 140258693 -77778465 - MIR3 SINE MIR -41 167 21 578 277 217 0 chr3 140259207 140259507 -77777651 - L2 LINE L2 -98 3215 2851 709 193 0 14 chr3 140259970 140260110 -77777048 - AluSq/x SINE Alu -174 139 2 726 250 47 9 chr3 140260216 140260428 -77776730 + L1ME1 LINE L1 5942 6161 -5 187 259 0 35 chr3 140260714 140260772 -77776386 + MIR SINE MIR 36 91 -117 23 0 0 0 chr3 140261366 140261389 -77775769 + AT_rich Low_complexity Low_complexity 1 23 0 2392 127 46 84 chr3 140261937 140262460 -77774698 + pTR5 LTR ERV1 1526 2295 -143 429 179 13 0 chr3 140262466 140262544 -77774614 + FLAM SINE Alu 49 127 -6 * 897 227 50 81 chr3 140262537 140262858 -77774300 - Charlie1b DNA MER1_type -208 315 5 2039 124 38 0 chr3 140263209 140263500 -77773658 - AluSx SINE Alu -10 302 1 2030 160 16 16 chr3 140263832 140264239 -77772919 - MLT2A2 LTR ERVL -149 304 1 1497 136 4 43 chr3 140264637 140264895 -77772263 + AluJb SINE Alu 1 248 -64 495 259 129 71 chr3 140265053 140265155 -77772003 + MLT1A1 LTR MaLR 39 134 -231 1546 118 144 0 chr3 140265155 140265384 -77771774 + AluJb SINE Alu 37 298 -14 495 259 129 71 chr3 140265384 140265590 -77771568 + MLT1A1 LTR MaLR 134 365 0 609 253 121 47 chr3 140266094 140266164 -77770994 + Charlie8 DNA MER1_type 1 64 -277 2625 64 0 3 chr3 140266164 140266477 -77770681 - AluSq SINE Alu -1 312 1 609 253 121 47 chr3 140266477 140266663 -77770495 + Charlie8 DNA MER1_type 64 276 -65 204 125 42 42 chr3 140267089 140267137 -77770021 + GA-rich Low_complexity Low_complexity 1 48 0 1025 260 68 22 chr3 140268228 140268751 -77768407 + L2 LINE L2 2748 3300 -13 707 250 32 9 chr3 140269604 140269824 -77767334 + MIR SINE MIR 17 241 -21 2507 96 0 0 chr3 140269885 140270197 -77766961 + AluSx SINE Alu 1 312 0 423 258 6 17 chr3 140270381 140270558 -77766600 - MER113 DNA MER1_type? -265 256 82 4642 117 48 71 chr3 140270558 140271272 -77765886 + MER49 LTR ERV1 1 730 -193 2309 89 10 0 chr3 140271272 140271563 -77765595 - AluSg SINE Alu -16 294 1 1757 171 28 0 chr3 140271570 140271856 -77765302 - AluJo SINE Alu -13 299 6 4642 117 48 71 chr3 140271856 140272053 -77765105 + MER49 LTR ERV1 736 899 -24 432 0 0 0 chr3 140272054 140272102 -77765056 + (TG)n Simple_repeat Simple_repeat 2 49 0 1001 228 18 5 chr3 140272570 140272794 -77764364 + MER45C DNA AcHobo 2 228 -725 1562 181 118 77 chr3 140273108 140273176 -77763982 - MLT1F1 LTR MaLR -3 564 500 1586 198 13 25 chr3 140273176 140273490 -77763668 - AluJo SINE Alu -2 310 1 1562 181 118 77 chr3 140273490 140273903 -77763255 - MLT1F1 LTR MaLR -67 500 63 587 161 0 0 chr3 140273917 140274010 -77763148 - FRAM SINE Alu -19 157 65 2030 163 0 0 chr3 140274197 140274498 -77762660 - AluSx SINE Alu -11 301 1 199 245 180 33 chr3 140274817 140274942 -77762216 + MIR3 SINE MIR 13 154 -54 2612 167 45 4 chr3 140275313 140275804 -77761354 - L1MC1 LINE L1 0 6333 5823 2240 94 0 59 chr3 140275804 140276124 -77761034 - AluSx SINE Alu -11 301 1 474 190 5 144 chr3 140476242 140476285 -77560873 - L1MA10 LINE L1 0 6334 6292 938 231 18 78 chr3 140476285 140476387 -77560771 - L1ME1 LINE L1 -24 6142 6035 1711 175 14 10 chr3 140476387 140476679 -77560479 + AluJb SINE Alu 9 301 -11 938 231 18 78 chr3 140476679 140476858 -77560300 - L1ME1 LINE L1 -131 6035 5878 431 94 12 94 chr3 140476865 140476950 -77560208 - MADE1 DNA Mariner 0 80 3 381 247 17 34 chr3 140477083 140477261 -77559897 + G-rich Low_complexity Low_complexity 6 180 0 256 271 13 33 chr3 140477271 140477422 -77559736 + (CGGGG)n Simple_repeat Simple_repeat 4 151 0 333 256 66 16 chr3 140477766 140477782 -77559376 + L1MD1 LINE L1 5870 5884 -358 1898 81 12 0 chr3 140477782 140478030 -77559128 + AluSx SINE Alu 58 308 -4 333 256 66 16 chr3 140478030 140478134 -77559024 + L1MD1 LINE L1 5884 5996 -246 * 1175 172 77 23 chr3 140478033 140478319 -77558839 + L1MB5 LINE L1 5892 6180 0 2344 97 0 7 chr3 140478329 140478639 -77558519 + AluSc SINE Alu 1 308 -1 807 196 49 31 chr3 140478742 140478966 -77558192 + L1MC3 LINE L1 5922 6149 -1636 1736 70 18 4 chr3 140479789 140480018 -77557140 + AluSp SINE Alu 18 249 -64 199 328 210 51 chr3 140480103 140480298 -77556860 + L2 LINE L2 3047 3272 0 940 196 192 8 chr3 140480469 140480724 -77556434 - AluJo SINE Alu -10 302 1 303 163 0 0 chr3 140480922 140480971 -77556187 + AluSp SINE Alu 254 302 0 264 287 115 25 chr3 140480978 140481135 -77556023 - L3 LINE CR1 -748 829 659 822 252 53 56 chr3 140481334 140481671 -77555487 + L1MC/D LINE L1 5281 5616 -2192 229 79 79 0 chr3 140481678 140481716 -77555442 + L1MC/D LINE L1 5685 5725 -2083 278 211 53 26 chr3 140481716 140481792 -77555366 + MLT1L LTR MaLR 2 79 -536 699 208 10 83 chr3 140481912 140482104 -77555054 + MER5A DNA MER1_type 9 186 -3 475 274 81 66 chr3 140482104 140482436 -77554722 + MLT1L LTR MaLR 245 581 -34 1537 163 64 7 chr3 140482503 140482786 -77554372 - AluSq SINE Alu -13 300 2 433 311 34 8 chr3 140482891 140483010 -77554148 + L2 LINE L2 3151 3272 0 306 300 21 114 chr3 140483065 140483302 -77553856 - L2 LINE L2 -834 2480 2266 698 74 67 0 chr3 140483565 140483714 -77553444 + (TA)n Simple_repeat Simple_repeat 1 159 0 2498 67 3 0 chr3 140483715 140484013 -77553145 - AluSp SINE Alu -14 299 1 226 270 108 0 chr3 140485183 140485257 -77551901 - MIR SINE MIR -94 114 33 260 196 0 0 chr3 140485266 140485312 -77551846 - L2 LINE L2 -17 3296 3251 2283 112 0 3 chr3 140485776 140486079 -77551079 - AluSx SINE Alu -10 302 1 384 241 24 12 chr3 140486279 140486362 -77550796 + MER21B LTR ERV1 15 98 -765 1697 242 62 23 chr3 140486398 140486999 -77550159 + MER21B LTR ERV1 98 786 -77 23 0 0 0 chr3 140487463 140487486 -77549672 + AT_rich Low_complexity Low_complexity 1 23 0 541 274 88 73 chr3 140487692 140487794 -77549364 - L3 LINE CR1 -306 1271 1172 2238 74 0 68 chr3 140487794 140488119 -77549039 + AluY SINE Alu 1 303 -8 541 274 88 73 chr3 140488119 140488333 -77548825 - L3 LINE CR1 -405 1172 950 1410 138 0 0 chr3 140488415 140488611 -77548547 + AluSx SINE Alu 3 198 -114 1717 174 20 0 chr3 140489192 140489485 -77547673 + AluSx SINE Alu 4 302 -10 336 24 0 0 chr3 140489485 140489526 -77547632 + (TA)n Simple_repeat Simple_repeat 2 42 0 2234 113 0 3 chr3 140489598 140489900 -77547258 + AluSg SINE Alu 1 301 -9 3262 113 6 10 chr3 140489913 140490393 -77546765 + MER9 LTR ERVK 34 511 0 4750 84 15 18 chr3 140490393 140491057 -77546101 + HERVK9 LTR ERVK 1 662 -5254 31275 88 1 3 chr3 140491057 140495075 -77542083 + HERVK9 LTR ERVK 1625 5634 -282 2088 121 36 17 chr3 140495100 140495447 -77541711 + HERVK9 LTR ERVK 5635 5916 0 3358 122 30 10 chr3 140495447 140495888 -77541270 + MER9 LTR ERVK 1 455 -56 369 0 0 0 chr3 140495888 140495929 -77541229 + (TG)n Simple_repeat Simple_repeat 2 42 0 3358 122 30 10 chr3 140495929 140495988 -77541170 + MER9 LTR ERVK 455 511 0 699 214 0 29 chr3 140496550 140496639 -77540519 - AluJo SINE Alu -92 220 135 216 0 0 0 chr3 140496639 140496663 -77540495 + (CTTG)n Simple_repeat Simple_repeat 2 25 0 699 214 0 29 chr3 140496663 140496713 -77540445 - AluJo SINE Alu -177 135 85 251 71 0 48 chr3 140496713 140496755 -77540403 - AluSc SINE Alu -51 248 209 * 298 92 13 118 chr3 140496726 140496802 -77540356 + Alu SINE Alu 232 299 -1 2305 121 57 79 chr3 140496929 140497481 -77539677 - LTR35 LTR ERV1 -4 614 1 544 174 0 12 chr3 140497781 140497867 -77539291 - AluJo SINE Alu -226 86 2 2326 98 3 0 chr3 140498095 140498401 -77538757 - AluSx SINE Alu -5 307 1 535 258 161 0 chr3 140498491 140498646 -77538512 + MER5A DNA MER1_type 10 189 0 2200 66 0 31 chr3 140498847 140499178 -77537980 - AluY SINE Alu 0 326 5 885 165 0 0 chr3 140499184 140499317 -77537841 - FLAM_C SINE Alu -10 133 1 2201 111 20 0 chr3 140499598 140499895 -77537263 + AluSx SINE Alu 1 303 -9 249 88 0 0 chr3 140499900 140499934 -77537224 - U2 snRNA snRNA -154 34 1 595 301 117 53 chr3 140499959 140500301 -77536857 + L2 LINE L2 2909 3272 0 227 125 97 14 chr3 140500305 140500377 -77536781 + (TTAA)n Simple_repeat Simple_repeat 1 78 0 619 264 140 0 chr3 140500573 140500766 -77536392 + MIR SINE MIR 22 241 -21 804 243 49 26 chr3 140500835 140501061 -77536097 + L1ME3 LINE L1 5864 6094 -68 1477 184 3 20 chr3 140501067 140501360 -77535798 - AluSx SINE Alu -14 298 11 3294 155 32 40 chr3 140501482 140502135 -77535023 + L1MB7 LINE L1 5526 6173 -11 386 196 98 0 chr3 140502135 140502237 -77534921 + L1MC3 LINE L1 7665 7776 -9 474 217 11 97 chr3 140503147 140503322 -77533836 + L1ME3 LINE L1 5997 6156 -6 2505 70 0 16 chr3 140503638 140503952 -77533206 + AluSx SINE Alu 1 309 -3 252 156 0 22 chr3 140504330 140504375 -77532783 - MIR SINE MIR -156 106 63 819 188 237 5 chr3 140504566 140504773 -77532385 + AluJo SINE Alu 1 255 -57 27 39 0 19 chr3 140504972 140504998 -77532160 + AT_rich Low_complexity Low_complexity 1 26 -25 2211 112 3 0 chr3 140504998 140505294 -77531864 + AluSq SINE Alu 1 297 -16 27 39 0 19 chr3 140505294 140505319 -77531839 + AT_rich Low_complexity Low_complexity 26 51 0 228 35 0 0 chr3 140505576 140505605 -77531553 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2197 114 0 0 chr3 140506002 140506292 -77530866 + AluSx SINE Alu 1 290 -22 301 98 0 0 chr3 140507500 140507541 -77529617 - Alu SINE Alu -18 284 244 1342 184 45 51 chr3 140507541 140507877 -77529281 + L1ME1 LINE L1 5807 6140 -26 1767 176 0 20 chr3 140508168 140508470 -77528688 + AluJb SINE Alu 1 296 -16 691 260 70 26 chr3 140508889 140509116 -77528042 + MER102b DNA MER1_type 104 340 -1 216 0 0 0 chr3 140509785 140509809 -77527349 + (CAG)n Simple_repeat Simple_repeat 3 26 0 189 94 0 0 chr3 140510465 140510497 -77526661 + (A)n Simple_repeat Simple_repeat 1 32 0 189 0 0 0 chr3 140511402 140511423 -77525735 + (A)n Simple_repeat Simple_repeat 1 21 0 2261 115 3 0 chr3 140512879 140513183 -77523975 - AluSx SINE Alu -7 305 1 2067 127 0 7 chr3 140513810 140514102 -77523056 - AluSx SINE Alu -18 294 5 267 284 9 37 chr3 140514250 140514359 -77522799 + GA-rich Low_complexity Low_complexity 3 108 0 327 231 105 21 chr3 140514848 140514991 -77522167 + L1ME4a LINE L1 5967 6121 0 1506 182 36 23 chr3 140515246 140515553 -77521605 + AluJb SINE Alu 1 311 -1 754 131 0 33 chr3 140515572 140515694 -77521464 + FLAM_C SINE Alu 12 129 -14 183 290 224 9 chr3 140515855 140515962 -77521196 - L2 LINE L2 -5 3308 3179 24 0 0 0 chr3 140517280 140517304 -77519854 + AT_rich Low_complexity Low_complexity 1 24 0 376 271 85 17 chr3 140517748 140517925 -77519233 + L1MDa LINE L1 2383 2571 -3969 1061 255 89 34 chr3 140517967 140518472 -77518686 + L1MDa LINE L1 2665 3197 -3343 476 293 30 54 chr3 140518633 140518800 -77518358 + L1MCa LINE L1 206 353 -5692 1967 240 140 68 chr3 140519116 140520080 -77517078 + L1MCa LINE L1 554 1447 -5298 1704 171 19 13 chr3 140520080 140520390 -77516768 + AluJb SINE Alu 1 312 0 1967 240 140 68 chr3 140520390 140520425 -77516733 + L1MCa LINE L1 1447 1478 -5267 2447 85 3 0 chr3 140520425 140520731 -77516427 + AluSg SINE Alu 1 307 -3 1967 240 140 68 chr3 140520731 140521430 -77515728 + L1MCa LINE L1 1478 2524 -4221 746 207 0 0 chr3 140521437 140521558 -77515600 + FLAM_A SINE Alu 13 133 -9 1680 181 30 3 chr3 140521560 140521863 -77515295 + AluJo SINE Alu 1 311 -1 699 256 38 66 chr3 140521863 140521997 -77515161 + L1MCa LINE L1 2541 2677 -4068 1910 167 3 3 chr3 140521997 140522297 -77514861 + AluJb SINE Alu 1 300 -12 699 256 38 66 chr3 140522297 140522482 -77514676 + L1MCa LINE L1 2677 2851 -3894 1706 149 103 37 chr3 140522484 140522832 -77514326 + THE1C LTR MaLR 1 371 -4 3214 136 8 64 chr3 140522836 140523257 -77513901 + THE1C-int LTR MaLR 1 381 -1270 1987 121 18 3 chr3 140523257 140523539 -77513619 + AluSx SINE Alu 1 286 -26 3214 136 8 64 chr3 140523539 140523711 -77513447 + THE1C-int LTR MaLR 381 561 -1090 1307 115 111 25 chr3 140523711 140523946 -77513212 + THE1C LTR MaLR 121 375 0 4801 206 58 55 chr3 140523952 140524136 -77513022 + L1MCa LINE L1 2822 3004 -3560 1778 191 0 0 chr3 140524136 140524430 -77512728 + AluSx SINE Alu 1 294 -18 252 0 0 0 chr3 140524430 140524458 -77512700 + (CA)n Simple_repeat Simple_repeat 2 29 0 4801 206 58 55 chr3 140524458 140525017 -77512141 + L1MCa LINE L1 3004 3560 -3004 2336 99 0 3 chr3 140525017 140525329 -77511829 + AluY SINE Alu 1 311 0 4801 206 58 55 chr3 140525329 140526231 -77510927 + L1MCa LINE L1 3560 4474 -2090 1057 168 16 0 chr3 140526947 140527138 -77510020 + AluJb SINE Alu 86 279 -33 255 31 0 0 chr3 140527138 140527170 -77509988 + (CA)n Simple_repeat Simple_repeat 1 32 0 1213 178 13 21 chr3 140527777 140528013 -77509145 + AluJb SINE Alu 79 312 0 452 162 0 0 chr3 140528122 140528190 -77508968 + AluS SINE Alu 2 69 -243 * 640 205 0 0 chr3 140528186 140528298 -77508860 + AluJo/FRAM SINE Alu 134 245 -67 1174 183 156 19 chr3 140528696 140528937 -77508221 + AluJo SINE Alu 1 280 -22 225 83 0 0 chr3 140528937 140528973 -77508185 + (CATA)n Simple_repeat Simple_repeat 1 36 0 1174 183 156 19 chr3 140528973 140528988 -77508170 + AluJo SINE Alu 280 292 -10 186 157 39 39 chr3 140529104 140529155 -77508003 + L2 LINE L2 3220 3270 -2 2516 202 45 22 chr3 140529372 140530372 -77506786 - L1ME2 LINE L1 -251 5913 4899 1109 260 68 44 chr3 140530440 140530825 -77506333 + L2 LINE L2 1014 1407 -1907 381 245 136 65 chr3 140530839 140531023 -77506135 + MIR SINE MIR 63 259 -3 2152 92 10 7 chr3 140531128 140531423 -77505735 + AluSx SINE Alu 1 296 -16 2157 94 0 7 chr3 140531430 140531737 -77505421 + AluY SINE Alu 1 305 -6 198 191 0 0 chr3 140531744 140531786 -77505372 + (CATA)n Simple_repeat Simple_repeat 3 44 0 22 35 0 0 chr3 140531830 140531859 -77505299 + AT_rich Low_complexity Low_complexity 1 29 0 244 115 0 58 chr3 140531873 140531925 -77505233 - L1PA15 LINE L1 -7 6158 6110 4016 76 0 8 chr3 140532548 140533063 -77504095 - MER9 LTR ERVK 0 511 1 1696 171 122 53 chr3 140533494 140533816 -77503342 + L1MB3 LINE L1 5451 5749 -434 1907 149 0 10 chr3 140533816 140534117 -77503041 + AluJb SINE Alu 2 299 -13 1949 148 10 0 chr3 140534122 140534426 -77502732 + AluSx SINE Alu 1 307 -5 1696 171 122 53 chr3 140534426 140534666 -77502492 + L1MB3 LINE L1 5752 6183 0 560 119 0 59 chr3 140535059 140535160 -77501998 + AluJ/FRAM SINE Alu 218 312 0 1628 159 10 45 chr3 140535286 140535595 -77501563 + AluJo SINE Alu 1 298 -14 1050 297 83 59 chr3 140535632 140535735 -77501423 + L2 LINE L2 2282 2381 -891 225 0 0 0 chr3 140535735 140535760 -77501398 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1050 297 83 59 chr3 140535760 140536061 -77501097 + L2 LINE L2 2381 2673 -599 1791 148 37 0 chr3 140536061 140536358 -77500800 + AluSx SINE Alu 2 309 -3 1050 297 83 59 chr3 140536358 140536915 -77500243 + L2 LINE L2 2673 3271 -1 757 194 62 0 chr3 140537944 140538107 -77499051 + L1MD2 LINE L1 6194 7807 0 562 254 60 63 chr3 140538118 140538370 -77498788 + MER21B LTR ERV1 464 714 -149 991 107 0 89 chr3 140538777 140538869 -77498289 - LTR32 LTR ERVL 0 471 399 1868 150 0 10 chr3 140538869 140539163 -77497995 - AluSx SINE Alu -19 293 3 991 107 0 89 chr3 140539163 140539238 -77497920 - LTR32 LTR ERVL -72 399 319 520 268 79 26 chr3 140539465 140539496 -77497662 - MIR SINE MIR -13 249 221 2384 71 0 7 chr3 140539496 140539806 -77497352 - AluY SINE Alu -3 308 1 520 268 79 26 chr3 140539806 140539964 -77497194 - MIR SINE MIR -41 221 50 315 303 143 0 chr3 140540011 140540130 -77497028 - MIR SINE MIR -77 185 50 1696 172 7 3 chr3 140540319 140540615 -77496543 - AluJb SINE Alu -15 297 1 1496 164 14 21 chr3 140541295 140541582 -77495576 + AluJb SINE Alu 1 285 -27 372 43 0 0 chr3 140541582 140541628 -77495530 + (CA)n Simple_repeat Simple_repeat 2 47 0 187 158 158 0 chr3 140541763 140541801 -77495357 + L2 LINE L2 3261 3304 -9 319 262 148 81 chr3 140542100 140542563 -77494595 - MLT1K LTR MaLR -18 570 11 273 157 0 20 chr3 140542867 140542918 -77494240 + MIR3 SINE MIR 114 163 -45 182 243 0 27 chr3 140542939 140542976 -77494182 + MIR SINE MIR 33 68 -194 1554 149 71 7 chr3 140542977 140543246 -77493912 + AluJb SINE Alu 1 286 -26 2082 103 0 0 chr3 140543327 140543631 -77493527 + AluSc SINE Alu 1 304 0 1152 241 65 35 chr3 140543638 140544041 -77493117 - L1MC4 LINE L1 0 8042 7628 * 2729 174 13 2 chr3 140544036 140544514 -77492644 + L1MB7 LINE L1 5508 5990 -194 288 229 72 0 chr3 140544561 140544644 -77492514 + MER102b DNA MER1_type 203 291 -50 2038 129 0 3 chr3 140544792 140545094 -77492064 + AluJb SINE Alu 11 311 -1 2092 128 0 3 chr3 140545256 140545568 -77491590 + AluSx SINE Alu 1 311 -1 489 115 0 0 chr3 140546103 140546190 -77490968 + (TG)n Simple_repeat Simple_repeat 1 87 0 2117 130 29 21 chr3 140546396 140546852 -77490306 + LTR10E LTR ERV1 1 612 -21 192 269 176 17 chr3 140547279 140547398 -77489760 + L2 LINE L2 2923 3060 -212 445 233 53 8 chr3 140547427 140547560 -77489598 + L1MA7 LINE L1 6011 6149 -142 412 237 15 0 chr3 140548508 140548639 -77488519 + GA-rich Low_complexity Low_complexity 2 134 0 252 185 0 0 chr3 140548634 140548688 -77488470 + A-rich Low_complexity Low_complexity 3 56 0 * 243 294 0 15 chr3 140548834 140548902 -77488256 + GA-rich Low_complexity Low_complexity 3 69 0 457 198 18 0 chr3 140548906 140549017 -77488141 + CT-rich Low_complexity Low_complexity 2 114 0 256 163 0 0 chr3 140549565 140549608 -77487550 + 5S rRNA rRNA 1 43 -78 1939 140 3 3 chr3 140549909 140550216 -77486942 + AluSx SINE Alu 1 307 -5 288 302 168 22 chr3 140550263 140550543 -77486615 - L2 LINE L2 -266 3047 2710 1416 133 9 13 chr3 140550568 140550801 -77486357 + AluJb SINE Alu 1 232 -80 246 301 43 99 chr3 140550809 140550837 -77486321 + L1ME LINE L1 5455 5483 -638 1037 167 43 34 chr3 140550837 140551070 -77486088 + MER46A DNA MER2_type 1 235 -1 246 301 43 99 chr3 140551070 140551304 -77485854 + L1ME LINE L1 5483 5700 -421 2062 120 0 3 chr3 140551304 140551605 -77485553 - AluSq SINE Alu -13 300 1 246 301 43 99 chr3 140551605 140551643 -77485515 + L1ME LINE L1 5700 5739 -382 670 96 0 0 chr3 140551657 140551751 -77485407 + AluY SINE Alu 209 302 -9 2110 126 0 0 chr3 140552174 140552484 -77484674 - AluSx SINE Alu -2 310 1 593 273 110 60 chr3 140552848 140553063 -77484095 - L1M4 LINE L1 -2409 4235 4032 447 52 0 0 chr3 140553063 140553121 -77484037 + (TG)n Simple_repeat Simple_repeat 2 59 0 593 273 110 60 chr3 140553121 140553703 -77483455 - L1M4 LINE L1 -2612 4032 3398 1648 164 31 3 chr3 140553727 140554019 -77483139 - AluSx SINE Alu -12 300 1 2066 133 0 0 chr3 140554248 140554550 -77482608 - AluSx SINE Alu -8 304 3 1087 201 19 106 chr3 140554553 140554912 -77482246 + MLT2D LTR ERVL 81 408 -6 1937 96 31 38 chr3 140555822 140556113 -77481045 + AluSg SINE Alu 1 289 -21 259 270 70 52 chr3 140557210 140557325 -77479833 + MER5A DNA MER1_type 51 167 -22 * 330 263 59 51 chr3 140557221 140557339 -77479819 - MER5A DNA MER1_type -50 139 10 206 352 11 34 chr3 140557383 140557471 -77479687 + L2 LINE L2 3227 3312 -1 180 176 0 0 chr3 140557496 140557530 -77479628 + A-rich Low_complexity Low_complexity 4 37 0 208 125 0 75 chr3 140557530 140557570 -77479588 + (GGGA)n Simple_repeat Simple_repeat 1 37 0 234 196 22 0 chr3 140557712 140557758 -77479400 - Charlie8 DNA MER1_type -993 1424 1378 890 187 5 5 chr3 140557771 140557958 -77479200 + MER53 DNA DNA 3 189 0 1211 191 29 7 chr3 140558018 140558291 -77478867 - L1M4 LINE L1 -3655 2989 2711 1875 146 0 29 chr3 140558307 140558616 -77478542 + AluJo SINE Alu 2 301 -11 1029 216 0 5 chr3 140558670 140558874 -77478284 - AluJo SINE Alu -109 203 1 7539 198 30 37 chr3 140558882 140559428 -77477730 - L1M4 LINE L1 -4788 1858 1309 279 54 0 0 chr3 140559428 140559465 -77477693 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 1943 96 0 25 chr3 140559468 140559748 -77477410 - AluSg SINE Alu -37 273 1 7539 198 30 37 chr3 140559748 140560218 -77476940 - L1M4 LINE L1 -5339 1307 835 1820 147 92 14 chr3 140560218 140560566 -77476592 - THE1C LTR MaLR 0 375 1 7539 198 30 37 chr3 140560566 140561397 -77475761 - L1M4 LINE L1 -5811 835 16 1060 165 0 0 chr3 140561437 140561607 -77475551 - FRAM SINE Alu -14 162 1 300 345 6 17 chr3 140562128 140562302 -77474856 + (TG)n Simple_repeat Simple_repeat 1 172 0 191 125 25 0 chr3 140562398 140562438 -77474720 + (TG)n Simple_repeat Simple_repeat 1 41 0 271 374 6 0 chr3 140562711 140562882 -77474276 + (TG)n Simple_repeat Simple_repeat 1 172 0 464 273 176 16 chr3 140563554 140563810 -77473348 + L2 LINE L2 2999 3295 -18 624 276 147 9 chr3 140564314 140564539 -77472619 + L2 LINE L2 2356 2611 -703 4089 173 7 60 chr3 140564552 140564819 -77472339 + L1MB4 LINE L1 5340 5620 -560 1774 180 0 3 chr3 140564819 140565124 -77472034 + AluJb SINE Alu 1 304 -8 4089 173 7 60 chr3 140565124 140565481 -77471677 + L1MB4 LINE L1 5620 5908 -272 2244 83 0 38 chr3 140565481 140565795 -77471363 - AluSq SINE Alu -11 302 1 4089 173 7 60 chr3 140565795 140566037 -77471121 + L1MB4 LINE L1 5908 6161 -19 3153 132 64 63 chr3 140566038 140566685 -77470473 - MER51A LTR ERV1 0 640 2 2365 75 3 0 chr3 140566709 140567017 -77470141 - AluSc SINE Alu 0 309 1 778 263 151 18 chr3 140567047 140567623 -77469535 + L2 LINE L2 2642 3300 -13 201 39 0 0 chr3 140567623 140567649 -77469509 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 572 297 113 4 chr3 140567692 140567921 -77469237 - Charlie8 DNA MER1_type -2144 273 20 264 278 78 52 chr3 140567968 140568159 -77468999 + L2 LINE L2 2235 2430 -884 345 140 0 0 chr3 140568410 140568467 -77468691 + (CA)n Simple_repeat Simple_repeat 2 58 0 1457 261 68 56 chr3 140568583 140569157 -77468001 - L1ME2 LINE L1 -106 6058 5478 615 254 76 54 chr3 140569288 140569512 -77467646 + MER115 DNA AcHobo 45 273 -420 1341 201 83 76 chr3 140569560 140570008 -77467150 + MER41B LTR ERV1 146 596 -39 488 304 55 17 chr3 140570093 140570274 -77466884 + MER115 DNA AcHobo 356 543 -150 631 211 42 14 chr3 140570277 140570419 -77466739 - MLT1C LTR MaLR -12 455 310 240 244 102 71 chr3 140570445 140570572 -77466586 + MIR3 SINE MIR 32 162 -46 1050 165 0 0 chr3 140570616 140570786 -77466372 - AluSg/x SINE Alu -14 296 127 682 149 18 9 chr3 140570792 140570906 -77466252 + FRAM SINE Alu 35 149 -27 186 43 0 0 chr3 140570906 140570929 -77466229 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1222 280 129 30 chr3 140571485 140571553 -77465605 - MLT1K LTR MaLR -8 580 520 1599 181 9 29 chr3 140571553 140571868 -77465290 + AluJb SINE Alu 1 309 -3 1222 280 129 30 chr3 140571868 140572324 -77464834 - MLT1K LTR MaLR -68 520 4 216 204 23 0 chr3 140572402 140572446 -77464712 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 1900 150 0 0 chr3 140572465 140572751 -77464407 - AluSx SINE Alu -26 286 1 411 145 0 0 chr3 140572776 140572859 -77464299 + (TG)n Simple_repeat Simple_repeat 2 84 0 1947 268 49 31 chr3 140572895 140573821 -77463337 - L2 LINE L2 -4 3309 2380 243 286 146 6 chr3 140573989 140574160 -77462998 - L2 LINE L2 -530 2784 2590 502 256 33 24 chr3 140575013 140575254 -77461904 - MER41B LTR ERV1 -205 430 54 225 234 0 0 chr3 140575357 140575404 -77461754 + MIR SINE MIR 107 153 -109 1592 235 128 15 chr3 140575695 140576200 -77460958 + MLT1G1 LTR MaLR 1 529 -13 555 269 178 0 chr3 140576640 140576915 -77460243 - L2 LINE L2 -172 3141 2818 2648 61 0 0 chr3 140577083 140577393 -77459765 - AluY SINE Alu -1 310 1 1232 186 96 11 chr3 140577507 140577787 -77459371 - MLT1C LTR MaLR -163 304 1 578 323 18 0 chr3 140577792 140578015 -77459143 - LTR16A1 LTR ERVL -225 232 6 553 221 110 0 chr3 140578017 140578171 -77458987 + MIR SINE MIR 92 262 0 186 270 0 79 chr3 140578327 140578390 -77458768 - MIR3 SINE MIR -37 171 114 463 204 148 21 chr3 140578420 140578562 -77458596 + MIR SINE MIR 2 161 -101 748 241 139 38 chr3 140579059 140579296 -77457862 - MIR SINE MIR 0 262 2 301 322 58 50 chr3 140579339 140579597 -77457561 - MIR SINE MIR -1 261 2 959 118 15 7 chr3 140579696 140579831 -77457327 - AluJb SINE Alu -176 136 1 407 232 72 8 chr3 140580022 140580147 -77457011 - MER5A DNA MER1_type -22 167 35 189 298 36 36 chr3 140580618 140580702 -77456456 + MER5A DNA MER1_type 4 87 -102 * 202 304 152 36 chr3 140580630 140580742 -77456416 - MER5A DNA MER1_type -5 184 60 2293 113 3 0 chr3 140580787 140581088 -77456070 - AluSx SINE Alu -10 302 1 252 340 97 77 chr3 140581763 140582063 -77455095 + L2 LINE L2 2967 3272 0 455 216 180 0 chr3 140582111 140582379 -77454779 - FLAM_A SINE Alu 0 290 3 249 156 0 0 chr3 140582556 140582601 -77454557 + MER5A DNA MER1_type 73 117 -72 829 251 172 11 chr3 140583682 140584132 -77453026 + MLT1G1 LTR MaLR 1 492 -50 325 261 59 24 chr3 140584354 140584504 -77452654 + MIR SINE MIR 75 230 -32 225 275 197 7 chr3 140585000 140585142 -77452016 - MIR SINE MIR -1 261 93 369 250 58 8 chr3 140585301 140585421 -77451737 - L2 LINE L2 0 3313 3188 238 196 0 0 chr3 140585419 140585470 -77451688 - MIR SINE MIR -88 120 70 * 327 351 30 8 chr3 140585552 140585686 -77451472 + MIR SINE MIR 23 159 -103 22 0 0 0 chr3 140585946 140585968 -77451190 + AT_rich Low_complexity Low_complexity 1 22 0 287 277 96 0 chr3 140586033 140586127 -77451031 - MLT1H LTR MaLR -13 536 434 273 301 104 52 chr3 140586118 140586311 -77450847 - MLT1H LTR MaLR -242 307 105 * 260 315 90 0 chr3 140586373 140586484 -77450674 - L2 LINE L2 -642 2672 2552 350 196 145 72 chr3 140586500 140586638 -77450520 + L1ME LINE L1 5604 5751 -370 2092 157 3 0 chr3 140586701 140587051 -77450107 + AluJo SINE Alu 6 356 0 455 231 0 28 chr3 140587053 140587161 -77449997 + MIR SINE MIR 20 124 -84 230 336 86 16 chr3 140587191 140587447 -77449711 - L2 LINE L2 -189 3083 2810 23 0 0 0 chr3 140587789 140587812 -77449346 + AT_rich Low_complexity Low_complexity 1 23 0 2389 75 0 17 chr3 140587819 140588112 -77449046 + AluY SINE Alu 1 288 -23 730 145 8 0 chr3 140588120 140588237 -77448921 - FLAM_C SINE Alu -19 124 7 1839 174 30 3 chr3 140588272 140588576 -77448582 - AluJb SINE Alu 0 312 1 1900 149 3 14 chr3 140588576 140588871 -77448287 - AluJo SINE Alu -19 293 1 252 197 30 61 chr3 140588877 140588943 -77448215 - MIR SINE MIR -63 145 82 180 0 0 0 chr3 140589000 140589020 -77448138 + (TG)n Simple_repeat Simple_repeat 2 21 0 219 235 15 0 chr3 140589086 140589154 -77448004 + (TG)n Simple_repeat Simple_repeat 2 70 0 191 36 36 0 chr3 140590572 140590600 -77446558 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 200 222 14 0 chr3 140590658 140590730 -77446428 + (CTCA)n Simple_repeat Simple_repeat 4 76 0 2231 75 14 4 chr3 140590976 140591296 -77445862 - AluSg SINE Alu 0 323 1 578 254 11 54 chr3 140591451 140591636 -77445522 + MIR SINE MIR 86 262 0 537 258 62 0 chr3 140591644 140591772 -77445386 - MIR SINE MIR -100 162 27 1092 307 72 8 chr3 140591874 140592398 -77444760 - MLT1K LTR MaLR -2 586 1 241 211 111 33 chr3 140592664 140592754 -77444404 - MLT1K LTR MaLR -2 586 490 326 294 112 28 chr3 140593891 140593950 -77443208 + MIR SINE MIR 49 102 -160 2574 81 0 0 chr3 140593950 140594260 -77442898 - AluSx SINE Alu -2 310 1 326 294 112 28 chr3 140594260 140594343 -77442815 + MIR SINE MIR 102 203 -59 326 330 17 28 chr3 140594773 140594952 -77442206 + (CATATA)n Simple_repeat Simple_repeat 1 177 0 513 265 160 17 chr3 140595748 140595986 -77441172 - L2 LINE L2 0 3313 3042 191 349 87 16 chr3 140596021 140596147 -77441011 + L2 LINE L2 3031 3165 -107 192 355 26 0 chr3 140596942 140597018 -77440140 + MIR SINE MIR 69 146 -62 1341 260 150 24 chr3 140597032 140597524 -77439634 + MLT1K LTR MaLR 11 564 -24 1374 182 4 9 chr3 140597859 140598084 -77439074 + AluJb SINE Alu 1 224 -88 234 133 0 0 chr3 140598085 140598130 -77439028 + Alu SINE Alu 89 133 0 260 275 51 51 chr3 140598131 140598269 -77438889 + L2 LINE L2 2709 2846 -468 222 250 42 14 chr3 140598278 140598350 -77438808 + L2 LINE L2 3199 3272 0 867 184 193 5 chr3 140598669 140598711 -77438447 + L1MD2 LINE L1 6095 6128 -231 261 0 0 0 chr3 140598711 140598740 -77438418 + (CA)n Simple_repeat Simple_repeat 2 30 0 867 184 193 5 chr3 140598740 140598915 -77438243 + L1MD2 LINE L1 6128 6353 -6 2102 122 0 44 chr3 140598915 140599236 -77437922 + AluSx SINE Alu 1 307 -5 429 199 0 0 chr3 140599464 140599600 -77437558 + (TG)n Simple_repeat Simple_repeat 2 137 0 370 246 0 63 chr3 140599779 140599841 -77437317 + L2 LINE L2 3190 3242 -71 2412 180 96 2 chr3 140599841 140600351 -77436807 - MER74A LTR ERVL 0 558 1 370 246 0 63 chr3 140600351 140600414 -77436744 + L2 LINE L2 3242 3307 -6 314 136 0 17 chr3 140600414 140600473 -77436685 + (GGGA)n Simple_repeat Simple_repeat 1 58 0 690 207 107 50 chr3 140600578 140600925 -77436233 + L1M4 LINE L1 5114 5479 -699 1766 134 18 29 chr3 140601006 140601283 -77435875 + AluJo SINE Alu 22 295 -17 2406 106 0 0 chr3 140601289 140601591 -77435567 + AluSg SINE Alu 1 302 -8 763 204 17 6 chr3 140601593 140601765 -77435393 - ERVL LTR ERVL -69 5695 5522 1215 201 0 5 chr3 140601768 140601987 -77435171 - ERVL LTR ERVL -668 5096 4879 3412 182 39 19 chr3 140601988 140602624 -77434534 - ERVL LTR ERVL -1904 3860 3212 614 287 100 59 chr3 140602615 140603086 -77434072 - HERVL-C1 LTR ERVL -5161 493 4 * 1272 215 24 79 chr3 140603089 140603417 -77433741 - MLT2C1 LTR ERVL -1 396 94 1808 168 10 10 chr3 140603417 140603709 -77433449 + AluJb SINE Alu 1 292 -20 1272 215 24 79 chr3 140603709 140603798 -77433360 - MLT2C1 LTR ERVL -303 94 2 248 196 0 0 chr3 140603798 140603844 -77433314 + L1ME LINE L1 5639 5684 -482 653 195 8 0 chr3 140603870 140603998 -77433160 - FLAM_C SINE Alu -2 131 3 302 268 134 0 chr3 140604000 140604127 -77433031 + L1ME LINE L1 5672 5815 -351 1844 151 3 41 chr3 140604682 140604999 -77432159 + AluJo SINE Alu 7 311 -1 693 309 99 29 chr3 140605015 140605390 -77431768 - L1MC4a LINE L1 -1872 5936 5536 329 314 65 8 chr3 140605490 140605614 -77431544 + L2 LINE L2 3127 3257 -15 1689 179 3 20 chr3 140605621 140605917 -77431241 + AluJo SINE Alu 1 291 -21 595 273 120 5 chr3 140606166 140606375 -77430783 - Charlie8 DNA MER1_type -2184 233 1 230 319 0 0 chr3 140606390 140606459 -77430699 - MIR SINE MIR -61 147 79 1047 130 0 19 chr3 140606479 140606641 -77430517 + FRAM SINE Alu 6 164 -12 332 75 0 19 chr3 140606670 140606723 -77430435 + (TC)n Simple_repeat Simple_repeat 1 52 0 693 247 22 16 chr3 140608771 140608953 -77428205 - MIR SINE MIR -32 230 48 192 231 0 0 chr3 140609196 140609248 -77427910 + GA-rich Low_complexity Low_complexity 2 53 0 224 194 0 0 chr3 140609429 140609465 -77427693 + polypurine Low_complexity Low_complexity 1 36 0 274 281 18 32 chr3 140610538 140610676 -77426482 - MIR SINE MIR -63 145 46 515 272 82 0 chr3 140610995 140611153 -77426005 - MIR SINE MIR -2 260 90 188 176 100 17 chr3 140611503 140611571 -77425587 - MIR SINE MIR -58 150 77 395 284 6 65 chr3 140612057 140612226 -77424932 + MIR SINE MIR 90 248 -14 417 244 93 10 chr3 140612506 140612796 -77424362 + MLT1J2 LTR MaLR 67 406 -44 318 208 143 0 chr3 140612870 140612947 -77424211 + L2 LINE L2 3223 3310 -3 337 246 34 114 chr3 140612999 140613082 -77424076 - L2 LINE L2 -93 3179 3116 2852 187 76 23 chr3 140613082 140613768 -77423390 - MER72 LTR ERV1 0 722 1 337 246 34 114 chr3 140613768 140613859 -77423299 - L2 LINE L2 -156 3116 3019 206 286 18 0 chr3 140614091 140614147 -77423011 - L2 LINE L2 -215 3057 3001 224 234 0 0 chr3 140614221 140614268 -77422890 + L2 LINE L2 3267 3313 0 825 318 50 13 chr3 140614339 140614720 -77422438 + L2 LINE L2 2442 2836 -478 294 143 0 0 chr3 140615103 140615152 -77422006 + (CA)n Simple_repeat Simple_repeat 1 49 0 1276 159 43 23 chr3 140615152 140615453 -77421705 - L1MB8 LINE L1 -5 6173 5867 2421 91 0 0 chr3 140615453 140615750 -77421408 - AluSg SINE Alu -13 297 1 927 260 60 11 chr3 140616250 140616519 -77420639 - LTR16C LTR ERVL 0 491 210 295 224 0 0 chr3 140616761 140616819 -77420339 + L2 LINE L2 3208 3265 -7 228 258 15 15 chr3 140617150 140617216 -77419942 - MIR SINE MIR -57 151 86 317 268 396 0 chr3 140618084 140618248 -77418910 - MIR SINE MIR -2 260 32 1530 140 57 79 chr3 140618346 140618752 -77418406 + Charlie1 DNA MER1_type 2343 2739 -22 715 261 50 53 chr3 140619379 140619716 -77417442 + L1MC/D LINE L1 5281 5616 -2192 259 211 53 26 chr3 140619761 140619837 -77417321 + MLT1L LTR MaLR 2 79 -536 653 207 11 80 chr3 140619961 140620149 -77417009 + MER5A DNA MER1_type 12 186 -3 431 283 81 66 chr3 140620149 140620481 -77416677 + MLT1L LTR MaLR 245 581 -34 2103 99 60 7 chr3 140620548 140620832 -77416326 - AluSx SINE Alu -13 299 1 264 190 22 0 chr3 140621026 140621075 -77416083 + Alu SINE Alu 1 45 -256 1785 143 18 11 chr3 140621175 140621454 -77415704 - AluSq SINE Alu -32 281 1 1393 122 23 66 chr3 140621458 140621742 -77415416 + MSTB1 LTR MaLR 165 374 -1 473 244 109 83 chr3 140621745 140621793 -77415365 - MIR SINE MIR -22 240 195 1659 146 111 7 chr3 140621793 140622073 -77415085 - AluSg SINE Alu -1 309 1 473 244 109 83 chr3 140622073 140622254 -77414904 - MIR SINE MIR -67 195 5 215 291 13 25 chr3 140622324 140622403 -77414755 - MIR SINE MIR -111 151 74 1281 273 62 26 chr3 140622440 140622858 -77414300 + MLT1K LTR MaLR 156 588 0 245 208 0 0 chr3 140623051 140623099 -77414059 - MIR SINE MIR -3 259 212 329 204 124 9 chr3 140623149 140623262 -77413896 + LTR33 LTR ERVL 7 132 -389 394 205 103 6 chr3 140623304 140623460 -77413698 + LTR33 LTR ERVL 207 377 -144 1842 149 7 45 chr3 140623630 140623938 -77413220 - AluJb SINE Alu -16 296 1 624 325 0 36 chr3 140624002 140624201 -77412957 - MIR SINE MIR -1 261 71 1820 116 87 123 chr3 140624201 140624649 -77412509 + MSTB1 LTR MaLR 1 432 0 624 325 0 36 chr3 140624649 140624701 -77412457 - MIR SINE MIR -191 71 19 300 241 121 9 chr3 140624749 140624865 -77412293 - LTR33 LTR ERVL -386 135 7 555 293 13 6 chr3 140625237 140625394 -77411764 - MIR SINE MIR -3 259 102 1161 271 58 39 chr3 140625722 140626190 -77410968 + MLT1L LTR MaLR 134 610 -5 684 71 0 0 chr3 140626190 140626274 -77410884 + AluS SINE Alu 2 85 -227 621 290 20 40 chr3 140628408 140628656 -77408502 + MIR SINE MIR 8 250 -12 1633 171 11 0 chr3 140628739 140629026 -77408132 + AluJb SINE Alu 1 290 -22 696 234 51 55 chr3 140630347 140630580 -77406578 - MER20 DNA MER1_type -2 217 1 394 307 31 8 chr3 140630609 140630736 -77406422 + MIR SINE MIR 41 170 -92 207 305 0 17 chr3 140630742 140630801 -77406357 - MIR SINE MIR -203 59 2 759 189 113 0 chr3 140631384 140631543 -77405615 + AluSg/x SINE Alu 135 311 -1 751 139 47 0 chr3 140631546 140631718 -77405440 + GA-rich Low_complexity Low_complexity 1 180 0 321 104 21 0 chr3 140631718 140631766 -77405392 + (GGAA)n Simple_repeat Simple_repeat 1 49 0 2119 99 3 22 chr3 140631779 140631918 -77405240 + AluSx SINE Alu 1 141 -171 2222 98 3 0 chr3 140631918 140632213 -77404945 + AluSp SINE Alu 1 296 -17 2119 99 3 22 chr3 140632213 140632386 -77404772 + AluSx SINE Alu 141 307 -5 614 309 53 43 chr3 140632414 140632789 -77404369 + L1ME4a LINE L1 5482 5860 -261 325 200 82 0 chr3 140633003 140633088 -77404070 - L2 LINE L2 -396 2918 2827 2986 163 40 16 chr3 140633197 140633742 -77403416 + MER74A LTR ERVL 1 558 0 21 0 0 0 chr3 140634298 140634319 -77402839 + AT_rich Low_complexity Low_complexity 1 21 0 670 249 88 6 chr3 140634759 140634940 -77402218 + MIR SINE MIR 48 243 -19 761 136 0 0 chr3 140634953 140635063 -77402095 - FRAM SINE Alu -24 152 43 197 207 69 69 chr3 140635116 140635174 -77401984 - L2 LINE L2 0 3272 3215 899 129 117 12 chr3 140635946 140636117 -77401041 - MER5A DNA MER1_type 0 189 1 321 335 44 27 chr3 140636231 140636562 -77400596 - L2 LINE L2 -212 3060 2687 359 263 69 15 chr3 140636592 140636740 -77400418 - MIR3 SINE MIR -70 138 1 531 314 49 80 chr3 140637491 140637755 -77399403 - MIR SINE MIR -3 259 4 349 328 125 64 chr3 140637846 140638206 -77398952 - L2 LINE L2 -87 3185 2804 1946 96 86 0 chr3 140638218 140638498 -77398660 - AluSx SINE Alu -8 304 1 1429 185 10 17 chr3 140638697 140638994 -77398164 + AluJo SINE Alu 1 295 -17 872 159 236 0 chr3 140639051 140639233 -77397925 - MER46A DNA MER2_type -10 226 2 236 217 32 108 chr3 140639233 140639390 -77397768 + L1ME4a LINE L1 5866 6010 -111 209 293 52 0 chr3 140639599 140639657 -77397501 + L2 LINE L2 3208 3268 -4 764 181 16 0 chr3 140639725 140639852 -77397306 + FLAM_C SINE Alu 3 131 -12 1851 160 10 0 chr3 140639872 140640179 -77396979 + AluJo SINE Alu 1 310 -2 561 213 39 24 chr3 140640376 140640503 -77396655 + FLAM_A SINE Alu 3 131 -2 2025 110 7 13 chr3 140640504 140640814 -77396344 + AluSx SINE Alu 1 308 -4 323 268 102 16 chr3 140640882 140641009 -77396149 + L2 LINE L2 3176 3313 0 2088 110 7 3 chr3 140641147 140641446 -77395712 + AluSp SINE Alu 1 300 -13 198 71 0 0 chr3 140641581 140641609 -77395549 + (A)n Simple_repeat Simple_repeat 1 28 0 807 156 7 15 chr3 140641807 140641942 -77395216 + AluJo SINE Alu 1 134 -178 2273 82 0 10 chr3 140641968 140642272 -77394886 + AluY SINE Alu 1 301 -10 3211 229 59 43 chr3 140642467 140642920 -77394238 + L2 LINE L2 1842 2286 -1028 1955 119 0 35 chr3 140642920 140643231 -77393927 - AluSg SINE Alu -10 300 1 3211 229 59 43 chr3 140643231 140643244 -77393914 + L2 LINE L2 2286 2297 -1017 2129 108 3 19 chr3 140643244 140643559 -77393599 - AluSq SINE Alu -3 310 1 3211 229 59 43 chr3 140643559 140644030 -77393128 + L2 LINE L2 2297 2795 -519 472 221 252 15 chr3 140644026 140644157 -77393001 + MER5A DNA MER1_type 27 188 -1 * 601 270 75 52 chr3 140644201 140644453 -77392705 + L2 LINE L2 2912 3169 -144 1608 186 3 3 chr3 140644455 140644746 -77392412 + AluJo SINE Alu 1 291 -21 199 261 120 56 chr3 140644842 140644984 -77392174 - MIR SINE MIR -55 207 57 880 129 8 15 chr3 140645189 140645321 -77391837 + FLAM_C SINE Alu 2 132 -1 1174 194 28 0 chr3 140645926 140646137 -77391021 + MER46A DNA MER2_type 1 217 -19 2258 82 7 3 chr3 140646152 140646458 -77390700 - AluSq SINE Alu -6 307 1 3914 188 77 27 chr3 140646997 140648299 -77388859 + L1MB3 LINE L1 1042 6210 -42 1985 97 19 0 chr3 140648300 140648424 -77388734 + AluSx SINE Alu 1 121 -191 279 0 0 0 chr3 140648424 140648455 -77388703 + (CA)n Simple_repeat Simple_repeat 2 32 0 1985 97 19 0 chr3 140648455 140648599 -77388559 + AluSx SINE Alu 121 274 -38 1691 191 0 3 chr3 140648626 140648929 -77388229 + AluJb SINE Alu 1 302 -10 242 115 0 33 chr3 140648929 140648981 -77388177 + L1MB3 LINE L1 6201 6252 0 588 216 0 0 chr3 140648993 140649095 -77388063 + AluSq/x SINE Alu 2 103 -209 45 34 0 0 chr3 140649135 140649194 -77387964 + AT_rich Low_complexity Low_complexity 1 59 0 749 276 85 17 chr3 140649195 140649547 -77387611 + L1MEc LINE L1 1441 1816 -4580 937 103 0 22 chr3 140649641 140649777 -77387381 + AluJb SINE Alu 1 133 -179 1801 153 4 0 chr3 140650154 140650435 -77386723 + AluJb SINE Alu 1 282 -30 1601 120 12 0 chr3 140650659 140650901 -77386257 + AluSx SINE Alu 58 302 -10 1822 150 0 3 chr3 140651036 140651329 -77385829 - AluSx SINE Alu -8 304 13 628 157 36 29 chr3 140651341 140651481 -77385677 - L1M4 LINE L1 -1020 5126 4986 215 296 209 23 chr3 140651538 140651758 -77385400 + L2 LINE L2 2447 2707 -607 1836 98 0 12 chr3 140651773 140652028 -77385130 + AluSc SINE Alu 5 256 -53 1948 94 3 31 chr3 140652137 140652445 -77384713 + AluSg SINE Alu 1 300 0 193 303 79 13 chr3 140652716 140652792 -77384366 + L2 LINE L2 3183 3263 -50 21 0 0 0 chr3 140652815 140652836 -77384322 + AT_rich Low_complexity Low_complexity 1 21 0 246 143 0 0 chr3 140653354 140653403 -77383755 + (CGG)n Simple_repeat Simple_repeat 2 50 0 337 345 16 15 chr3 140653566 140653775 -77383383 + CT-rich Low_complexity Low_complexity 1 209 0 549 264 22 33 chr3 140655688 140655870 -77381288 - L2 LINE L2 0 3313 3134 1168 210 86 32 chr3 140655875 140656189 -77380969 - MER58B DNA MER1_type 0 341 11 246 118 0 0 chr3 140656185 140656219 -77380939 + MER58B DNA MER1_type 307 340 -1 * 188 275 46 3 chr3 140656293 140656397 -77380761 - L2 LINE L2 -217 3055 2920 320 236 34 22 chr3 140657228 140657317 -77379841 - L3 LINE CR1 -282 1295 1206 626 142 57 71 chr3 140657319 140657460 -77379698 - FLAM_C SINE Alu 0 143 5 2731 166 71 29 chr3 140657841 140658182 -77378976 - L1MC3 LINE L1 0 7785 7407 1676 189 0 0 chr3 140658182 140658484 -77378674 - AluJb SINE Alu -10 302 1 2731 166 71 29 chr3 140658484 140658734 -77378424 - L1MC3 LINE L1 -378 7407 7169 257 242 15 0 chr3 140658738 140658804 -77378354 - MLT1F1 LTR MaLR -466 101 35 4948 169 56 12 chr3 140658811 140659799 -77377359 - L1MC3 LINE L1 -833 6952 5922 2238 97 0 7 chr3 140659902 140660212 -77376946 - AluSc SINE Alu -1 308 1 1402 157 75 60 chr3 140660222 140660511 -77376647 - L1MB5 LINE L1 0 6180 5895 2151 95 10 0 chr3 140660511 140660816 -77376342 - AluSx SINE Alu -4 308 1 1402 157 75 60 chr3 140660816 140660888 -77376270 - L1MB5 LINE L1 -285 5895 5826 206 71 0 71 chr3 140710942 140710984 -77326174 + (A)n Simple_repeat Simple_repeat 1 39 0 326 272 55 23 chr3 140710989 140711206 -77325952 + L1M4 LINE L1 2722 2945 -3201 351 222 20 10 chr3 140711238 140711337 -77325821 - L1M4 LINE L1 -1424 4722 4623 2142 115 0 35 chr3 140712488 140712800 -77324358 - AluSg SINE Alu -9 301 1 401 350 47 14 chr3 140713194 140713408 -77323750 + MIR SINE MIR 32 252 -10 3515 208 21 63 chr3 140713728 140714740 -77322418 - LTR5 LTR ERVK 0 969 1 34 0 0 0 chr3 140715203 140715237 -77321921 + AT_rich Low_complexity Low_complexity 1 34 0 1213 218 14 55 chr3 140715254 140715506 -77321652 - L1MB3 LINE L1 -30 6153 5919 1972 157 0 0 chr3 140715506 140715800 -77321358 - AluSx SINE Alu -12 300 7 1213 218 14 55 chr3 140715800 140715906 -77321252 - L1MB3 LINE L1 -264 5919 5810 1969 137 6 37 chr3 140715907 140716229 -77320929 - AluSx SINE Alu 0 312 1 996 136 0 0 chr3 140716293 140716455 -77320703 + (TA)n Simple_repeat Simple_repeat 1 162 0 1499 211 0 18 chr3 140716489 140716764 -77320394 - AluJo SINE Alu -30 282 13 516 203 17 17 chr3 140716961 140717079 -77320079 - MER58B DNA MER1_type -14 327 210 1892 147 13 20 chr3 140717192 140717491 -77319667 + AluSx SINE Alu 1 297 -15 284 103 0 0 chr3 140717491 140717530 -77319628 - MADE1 DNA Mariner -41 39 1 566 333 113 41 chr3 140717530 140717999 -77319159 + L2 LINE L2 2770 3271 -1 677 246 1 3 chr3 140719481 140720198 -77316960 + (CA)n Simple_repeat Simple_repeat 1 716 0 349 384 28 9 chr3 140721242 140721453 -77315705 - L2 LINE L2 0 3313 3099 319 316 65 7 chr3 140721533 140721672 -77315486 + MIR SINE MIR 43 189 -73 834 244 29 57 chr3 140721694 140721973 -77315185 + MLT1A2 LTR MaLR 87 357 -17 2789 96 3 0 chr3 140722376 140722739 -77314419 + THE1B LTR MaLR 1 364 0 1952 114 0 75 chr3 140723983 140724322 -77312836 - AluSq SINE Alu 0 316 1 750 211 0 0 chr3 140724658 140724791 -77312367 + FLAM_C SINE Alu 1 133 0 1939 157 20 3 chr3 140725205 140725511 -77311647 + AluSq SINE Alu 1 311 -2 870 184 0 0 chr3 140725514 140725693 -77311465 + GA-rich Low_complexity Low_complexity 2 180 0 276 185 0 0 chr3 140725724 140725778 -77311380 + GA-rich Low_complexity Low_complexity 2 55 0 327 49 0 0 chr3 140725873 140725914 -77311244 + (GGAA)n Simple_repeat Simple_repeat 4 44 0 1359 202 29 62 chr3 140726649 140726707 -77310451 + L1MB8 LINE L1 5769 5827 -351 2099 122 3 7 chr3 140726707 140727003 -77310155 + AluSx SINE Alu 1 295 -17 1359 202 29 62 chr3 140727003 140727364 -77309794 + L1MB8 LINE L1 5827 6174 -4 847 98 4 6 chr3 140727369 140727624 -77309534 + AluSx SINE Alu 1 300 -9 207 0 0 0 chr3 140727624 140727647 -77309511 + (TA)n Simple_repeat Simple_repeat 1 23 0 203 296 0 0 chr3 140729018 140729072 -77308086 - MIR SINE MIR -6 256 203 181 316 133 38 chr3 140729210 140729368 -77307790 + L2 LINE L2 3054 3226 -87 2033 135 7 7 chr3 140729368 140729672 -77307486 - AluSg SINE Alu -5 305 2 862 187 16 64 chr3 140729682 140729869 -77307289 - AluJo SINE Alu -23 289 112 801 143 0 50 chr3 140729877 140730017 -77307141 + FLAM_C SINE Alu 1 133 0 2340 88 7 0 chr3 140730390 140730684 -77306474 - AluY SINE Alu -15 296 1 3992 188 23 39 chr3 140731524 140732322 -77304836 + LTR1 LTR ERV1 1 785 0 1203 208 121 30 chr3 140732654 140732697 -77304461 + MLT1C LTR MaLR 1 39 -466 6680 118 11 19 chr3 140732697 140733674 -77303484 + LTR5 LTR ERVK 1 969 0 1203 208 121 30 chr3 140733674 140734056 -77303102 + MLT1C LTR MaLR 39 505 0 2871 100 11 35 chr3 140734510 140734969 -77302189 + LTR7 LTR ERV1 1 448 -2 18860 113 14 12 chr3 140734971 140737954 -77299204 + HERVH LTR ERV1 1 2987 -4726 839 142 20 0 chr3 140737948 140738096 -77299062 + HERVH LTR ERV1 3140 3290 -4423 * 3334 97 4 6 chr3 140738095 140738590 -77298568 + HERVH LTR ERV1 3500 3993 -3720 4169 148 1 1 chr3 140738592 140739254 -77297904 + HERVH LTR ERV1 4488 5149 -2564 1316 134 18 5 chr3 140739255 140739472 -77297686 + HERVH LTR ERV1 5600 5819 -1894 * 2254 108 48 13 chr3 140739470 140739849 -77297309 + HERVH LTR ERV1 7322 7713 0 2613 88 103 7 chr3 140739849 140740258 -77296900 + LTR7 LTR ERV1 1 448 -2 281 220 211 0 chr3 140740943 140741052 -77296106 + MLT1J2 LTR MaLR 252 383 -67 1970 150 0 3 chr3 140741399 140741706 -77295452 + AluSx SINE Alu 1 306 0 2856 144 12 23 chr3 140741720 140742235 -77294923 + L1MC1 LINE L1 5783 6291 -42 592 160 17 0 chr3 140742235 140742354 -77294804 + CT-rich Low_complexity Low_complexity 4 124 0 268 177 0 5 chr3 140742357 140742368 -77294790 + L1MC1 LINE L1 6270 6280 -53 1988 125 0 4 chr3 140742368 140742640 -77294518 - AluSg SINE Alu -39 271 1 268 177 0 5 chr3 140742640 140742697 -77294461 + L1MC1 LINE L1 6280 6332 -1 332 260 65 39 chr3 140742718 140742872 -77294286 + L1ME3A LINE L1 5969 6126 -44 247 246 96 90 chr3 140743126 140743268 -77293890 - L2 LINE L2 -1350 1964 1819 2084 152 3 0 chr3 140743268 140743578 -77293580 + AluSp SINE Alu 1 311 -2 247 246 96 90 chr3 140743578 140743602 -77293556 - L2 LINE L2 -1495 1819 1797 2041 160 108 60 chr3 140743630 140743824 -77293334 + MLT1D LTR MaLR 1 184 -321 2349 106 0 0 chr3 140743824 140744116 -77293042 + AluSq SINE Alu 1 292 -21 2041 160 108 60 chr3 140744116 140744403 -77292755 + MLT1D LTR MaLR 184 505 0 2020 100 64 0 chr3 140744458 140744739 -77292419 + AluY SINE Alu 2 300 -11 1695 139 102 0 chr3 140744876 140745150 -77292008 - AluSx SINE Alu -10 302 1 362 328 138 13 chr3 140745199 140745504 -77291654 - L2 LINE L2 -2247 1067 725 1891 117 0 4 chr3 140746037 140746293 -77290865 - AluSx SINE Alu -46 266 12 1916 154 76 73 chr3 140746692 140747297 -77289861 + MER4A LTR ERV1 1 465 0 4215 186 50 10 chr3 140747363 140748179 -77288979 + MER21B LTR ERV1 1 849 -14 225 0 0 0 chr3 140748183 140748208 -77288950 + (TG)n Simple_repeat Simple_repeat 2 26 0 11866 219 59 47 chr3 140748215 140748295 -77288863 + MER21B-int LTR ERV1 1 79 -4112 2386 92 0 0 chr3 140748295 140748589 -77288569 + AluYa5 SINE Alu 1 294 -17 11866 219 59 47 chr3 140748589 140750508 -77286650 + MER21B-int LTR ERV1 79 1974 -2217 2365 117 0 3 chr3 140750508 140750817 -77286341 + AluSq SINE Alu 1 308 -5 11866 219 59 47 chr3 140750817 140751600 -77285558 + MER21B-int LTR ERV1 1974 2746 -1445 1993 131 44 0 chr3 140751600 140751898 -77285260 + AluSp SINE Alu 2 312 -1 11866 219 59 47 chr3 140751898 140752121 -77285037 + MER21B-int LTR ERV1 2746 2965 -1226 1934 116 79 10 chr3 140752121 140752413 -77284745 + AluSx SINE Alu 1 312 0 11866 219 59 47 chr3 140752413 140752628 -77284530 + MER21B-int LTR ERV1 2965 3176 -1015 2181 140 19 123 chr3 140752628 140752824 -77284334 + MSTA LTR MaLR 1 119 -309 2198 116 3 0 chr3 140752824 140753117 -77284041 + AluSx SINE Alu 1 294 -18 2181 140 19 123 chr3 140753117 140753398 -77283760 + MSTA LTR MaLR 119 428 0 11866 219 59 47 chr3 140753398 140753536 -77283622 + MER21B-int LTR ERV1 3176 3402 -789 2326 108 0 0 chr3 140753536 140753831 -77283327 - AluSg SINE Alu -15 295 1 1693 62 38 0 chr3 140754149 140754359 -77282799 + AluY SINE Alu 94 311 0 2323 92 3 10 chr3 140755564 140755870 -77281288 - AluSx SINE Alu -8 304 1 668 297 61 0 chr3 140756082 140756294 -77280864 - MER82 DNA MER2_type 0 653 429 1927 138 44 13 chr3 140756294 140756592 -77280566 - AluSx SINE Alu -5 307 1 4067 208 42 34 chr3 140757503 140757624 -77279534 + MER45B DNA AcHobo 11 130 -1451 2076 130 14 0 chr3 140757624 140757916 -77279242 - AluSx SINE Alu -16 296 1 4067 208 42 34 chr3 140757916 140758442 -77278716 + MER45B DNA AcHobo 130 671 -910 2182 122 3 10 chr3 140758442 140758754 -77278404 + AluSg SINE Alu 1 310 0 4067 208 42 34 chr3 140758754 140759127 -77278031 + MER45B DNA AcHobo 671 1040 0 187 316 51 0 chr3 140759150 140759229 -77277929 - L2 LINE L2 -790 2524 2442 683 167 22 58 chr3 140759458 140759596 -77277562 + FLAM_A SINE Alu 1 133 0 349 206 36 133 chr3 140759729 140759894 -77277264 + MIR SINE MIR 74 222 -40 528 227 31 133 chr3 140759894 140760150 -77277008 - MLT1B LTR MaLR 0 467 161 264 253 0 13 chr3 140760150 140760225 -77276933 + (TA)n Simple_repeat Simple_repeat 1 74 0 2011 130 3 7 chr3 140760227 140760538 -77276620 - AluSx SINE Alu 0 310 1 1082 200 9 31 chr3 140760590 140760815 -77276343 - AluJo SINE Alu -92 220 1 750 209 23 23 chr3 140760815 140760992 -77276166 - MLT1B LTR MaLR -213 177 1 1867 153 0 33 chr3 140761667 140761974 -77275184 + AluJo SINE Alu 5 301 -11 1861 230 70 2 chr3 140762419 140762892 -77274266 + L1MC4 LINE L1 7353 7857 -185 488 192 29 0 chr3 140762911 140763015 -77274143 + L1MC4 LINE L1 7919 8025 -17 29 28 0 0 chr3 140763015 140763051 -77274107 + AT_rich Low_complexity Low_complexity 1 36 0 235 279 61 61 chr3 140763064 140763229 -77273929 + MER5A DNA MER1_type 1 165 -24 * 441 314 6 26 chr3 140763081 140763237 -77273921 - MER5B DNA MER1_type -9 169 17 242 313 39 19 chr3 140763352 140763482 -77273676 + MIR SINE MIR 10 146 -62 2476 109 19 27 chr3 140763541 140763696 -77273462 + THE1B LTR MaLR 1 156 -208 1986 160 0 0 chr3 140763696 140763996 -77273162 - AluSx SINE Alu -12 300 1 2476 109 19 27 chr3 140763996 140764207 -77272951 + THE1B LTR MaLR 156 364 0 1309 172 40 43 chr3 140764644 140764969 -77272189 + MER33 DNA MER1_type 1 324 0 22 0 0 0 chr3 140765011 140765033 -77272125 + AT_rich Low_complexity Low_complexity 1 22 0 2028 145 0 7 chr3 140765037 140765347 -77271811 + AluSq SINE Alu 1 308 -5 2174 123 3 0 chr3 140765352 140765661 -77271497 + AluSx SINE Alu 1 310 -2 787 238 67 0 chr3 140766740 140766933 -77270225 + MER58A DNA MER1_type 1 206 -18 254 347 0 0 chr3 140767131 140767203 -77269955 + L2 LINE L2 3190 3261 -52 2261 119 3 0 chr3 140768031 140768333 -77268825 + AluSx SINE Alu 5 307 -5 187 278 93 10 chr3 140768512 140768609 -77268549 - MIR SINE MIR -52 210 106 2058 135 24 0 chr3 140768713 140769002 -77268156 - AluSx SINE Alu -16 296 1 1782 138 32 11 chr3 140770326 140770609 -77266549 - AluSx SINE Alu -23 289 1 1987 105 0 22 chr3 140770688 140770999 -77266159 - AluSq SINE Alu 0 320 16 754 118 0 0 chr3 140771000 140771102 -77266056 + AluSg/x SINE Alu 198 299 -10 434 60 179 0 chr3 140771644 140771711 -77265447 - MADE1 DNA Mariner 0 80 2 813 240 40 0 chr3 140772946 140773146 -77264012 - MER58A DNA MER1_type -16 208 1 2118 114 4 0 chr3 140774967 140775248 -77261910 + AluSx SINE Alu 1 282 -30 996 136 0 0 chr3 140775282 140775444 -77261714 + (TA)n Simple_repeat Simple_repeat 1 162 0 1952 140 6 37 chr3 140775508 140775830 -77261328 + AluSx SINE Alu 1 312 0 624 196 0 95 chr3 140775837 140775937 -77261221 + L1MB3 LINE L1 5814 5891 -292 1995 150 0 0 chr3 140775937 140776230 -77260928 + AluSx SINE Alu 7 299 -13 624 196 0 95 chr3 140776230 140776308 -77260850 + L1MB3 LINE L1 5891 5975 -208 1742 182 6 10 chr3 140776508 140776821 -77260337 - AluJb SINE Alu 0 312 1 196 326 136 0 chr3 140777097 140777229 -77259929 + MIR SINE MIR 81 230 -32 247 311 0 14 chr3 140777380 140777454 -77259704 - MIR3 SINE MIR -54 154 82 582 310 74 0 chr3 140779298 140779527 -77257631 + L1MD2 LINE L1 5763 6008 -351 2032 107 52 14 chr3 140779585 140779740 -77257418 - AluSx SINE Alu -12 300 152 2294 117 0 0 chr3 140779740 140780040 -77257118 - AluSq SINE Alu -13 300 1 2032 107 52 14 chr3 140780040 140780173 -77256985 - AluSx SINE Alu -160 152 1 299 293 74 63 chr3 140780250 140780404 -77256754 - MIR SINE MIR -68 140 26 633 168 50 8 chr3 140780694 140780813 -77256345 + FLAM_A SINE Alu 1 124 -9 2040 129 36 7 chr3 140781337 140781639 -77255519 + AluSx SINE Alu 1 311 -1 417 271 202 19 chr3 140781651 140782017 -77255141 - LTR33A LTR ERVL -16 507 75 2072 128 7 3 chr3 140782913 140783209 -77253949 - AluSx SINE Alu -15 297 1 839 265 91 29 chr3 140784632 140785115 -77252043 + L2 LINE L2 2777 3312 -1 796 259 66 4 chr3 140785115 140785358 -77251800 - MIR SINE MIR 0 262 5 196 115 0 96 chr3 140785375 140785427 -77251731 + MIR SINE MIR 135 181 -81 204 271 10 31 chr3 140786457 140786553 -77250605 + G-rich Low_complexity Low_complexity 2 95 0 181 161 0 0 chr3 140787618 140787649 -77249509 - L2 LINE L2 -3 3310 3280 2338 89 3 7 chr3 140788828 140789131 -77248027 - AluSq SINE Alu -11 302 1 2250 94 7 0 chr3 140789225 140789513 -77247645 - AluSc SINE Alu -19 290 1 1481 175 37 57 chr3 140790172 140790469 -77246689 + AluJo SINE Alu 1 291 -21 526 193 27 73 chr3 140790489 140790639 -77246519 + MLT1C LTR MaLR 41 183 -284 639 120 0 20 chr3 140790643 140790743 -77246415 + AluS SINE Alu 2 99 -213 584 256 91 23 chr3 140790968 140791187 -77245971 - MIR SINE MIR 0 262 29 1528 170 47 60 chr3 140791349 140791649 -77245509 - AluJo SINE Alu -16 296 1 975 103 0 0 chr3 140791847 140791973 -77245185 + AluSq/x SINE Alu 2 127 -186 377 268 68 63 chr3 140792082 140792272 -77244886 + L2 LINE L2 3120 3310 -3 2007 142 10 3 chr3 140792334 140792622 -77244536 - AluSg SINE Alu -20 290 1 186 194 0 0 chr3 140794406 140794468 -77242690 + GA-rich Low_complexity Low_complexity 1 62 0 767 221 95 0 chr3 140795334 140795524 -77241634 + MIR SINE MIR 49 256 -6 767 176 23 88 chr3 140795673 140795741 -77241417 - MER3 DNA MER1_type 0 209 138 2025 142 10 0 chr3 140795741 140796029 -77241129 + AluSx SINE Alu 1 291 -21 767 176 23 88 chr3 140796029 140796176 -77240982 - MER3 DNA MER1_type -71 138 8 3225 134 39 4 chr3 140796196 140796705 -77240453 - MER1A DNA MER1_type 0 527 1 2371 98 0 0 chr3 140796792 140797089 -77240069 - AluSq SINE Alu -16 297 1 560 267 41 31 chr3 140797113 140797308 -77239850 - MIR SINE MIR -45 217 21 302 294 76 0 chr3 140797670 140797762 -77239396 - L2 LINE L2 -12 3260 3162 501 272 82 13 chr3 140797791 140797949 -77239209 - MIR SINE MIR -15 247 79 3387 216 29 68 chr3 140798259 140799267 -77237891 - LTR5 LTR ERVK 0 969 1 1820 206 0 0 chr3 140799483 140799794 -77237364 + AluJo SINE Alu 1 311 -1 240 35 0 0 chr3 140799917 140799946 -77237212 + (TG)n Simple_repeat Simple_repeat 2 30 0 1861 146 0 55 chr3 140799946 140800307 -77236851 - AluSx SINE Alu -5 371 1 862 198 0 6 chr3 140800859 140801021 -77236137 - FRAM SINE Alu -3 163 3 584 126 0 45 chr3 140801035 140801146 -77236012 - FLAM_C SINE Alu 0 143 38 3607 129 103 48 chr3 140801146 140801443 -77235715 - LTR1 LTR ERV1 0 785 506 1903 65 0 4 chr3 140801443 140801673 -77235485 - AluY SINE Alu -67 244 16 3607 129 103 48 chr3 140801673 140802119 -77235039 - LTR1 LTR ERV1 -279 506 1 288 254 0 0 chr3 140802145 140802208 -77234950 - AluJ/FLAM SINE Alu -239 63 1 2124 117 6 46 chr3 140802387 140802713 -77234445 - AluSq SINE Alu 0 313 1 2415 89 0 0 chr3 140802934 140803226 -77233932 - AluSp SINE Alu -21 292 1 1252 227 110 20 chr3 140803280 140803616 -77233542 - MLT1C LTR MaLR -16 451 70 2071 147 7 0 chr3 140803616 140803915 -77233243 - AluSx SINE Alu -11 301 1 1252 227 110 20 chr3 140803915 140803987 -77233171 - MLT1C LTR MaLR -397 70 6 378 290 11 5 chr3 140804391 140804540 -77232618 + MER5A DNA MER1_type 30 178 0 442 240 16 88 chr3 140804554 140804603 -77232555 - MER5B DNA MER1_type 0 189 138 2003 158 0 0 chr3 140804603 140804900 -77232258 + AluJo SINE Alu 3 299 -13 442 240 16 88 chr3 140804900 140805036 -77232122 - MER5B DNA MER1_type -51 138 2 1872 148 3 43 chr3 140805762 140805908 -77231250 + AluSx SINE Alu 1 151 -161 2440 81 0 3 chr3 140805908 140806206 -77230952 + AluY SINE Alu 1 297 -14 1872 148 3 43 chr3 140806206 140806384 -77230774 + AluSx SINE Alu 151 312 0 795 146 0 8 chr3 140806565 140806695 -77230463 - FLAM_C SINE Alu -4 129 1 404 189 0 0 chr3 140807056 140807130 -77230028 + MER66B LTR ERV1 1 74 -412 231 235 20 0 chr3 140807144 140807195 -77229963 - MLT1F LTR MaLR -490 52 1 231 287 0 69 chr3 140807209 140807252 -77229906 + MER5B DNA MER1_type 4 48 -130 835 165 0 0 chr3 140807252 140807385 -77229773 - FLAM_A SINE Alu 0 133 1 231 287 0 69 chr3 140807385 140807442 -77229716 + MER5B DNA MER1_type 48 97 -81 1136 153 14 28 chr3 140807930 140808146 -77229012 - MER73 LTR ERVL 0 644 432 2198 123 3 10 chr3 140808223 140808523 -77228635 + AluSg SINE Alu 1 298 -12 258 136 0 0 chr3 140808830 140808874 -77228284 + (TC)n Simple_repeat Simple_repeat 1 44 0 2346 100 3 3 chr3 140809018 140809327 -77227831 + AluY SINE Alu 3 311 0 714 136 80 8 chr3 140809889 140810014 -77227144 - THE1B LTR MaLR -35 329 196 1963 137 6 42 chr3 140810428 140810741 -77226417 - AluSx SINE Alu -10 302 1 192 366 75 37 chr3 140810763 140810897 -77226261 + L2 LINE L2 3119 3257 -15 557 232 55 33 chr3 140812083 140812264 -77224894 + MLT1D LTR MaLR 1 185 -320 2246 107 3 0 chr3 140812274 140812564 -77224594 + AluSp SINE Alu 3 293 -20 2310 103 128 5 chr3 140812576 140812974 -77224184 - LTR7 LTR ERV1 -2 448 2 2306 88 53 13 chr3 140812975 140813351 -77223807 - HERVH LTR ERV1 0 7713 7323 1122 107 70 0 chr3 140813351 140813538 -77223620 - HERVH LTR ERV1 -1895 5818 5619 1886 204 115 18 chr3 140813638 140814561 -77222597 + SATR1 Satellite Satellite 1 1012 -21 28108 96 11 12 chr3 140814562 140818622 -77218536 - HERVE LTR ERV1 -2648 5165 1108 318 225 12 58 chr3 140818721 140818894 -77218264 + (TAA)n Simple_repeat Simple_repeat 2 166 0 21 36 0 0 chr3 140818911 140818939 -77218219 + AT_rich Low_complexity Low_complexity 1 28 0 1391 265 161 29 chr3 140818985 140820564 -77216594 + SATR1 Satellite Satellite 1 1787 -96 959 219 298 21 chr3 140820594 140821656 -77215502 + SATR1 Satellite Satellite 1 1356 -2 1073 227 195 42 chr3 140821693 140823118 -77214040 + SATR1 Satellite Satellite 1 1642 -404 2108 100 0 3 chr3 140824840 140825141 -77212017 + AluY SINE Alu 1 300 -11 276 269 60 60 chr3 140825202 140825336 -77211822 - L2 LINE L2 0 3272 3139 2018 120 0 7 chr3 140825698 140826007 -77211151 - AluSg SINE Alu -3 307 1 290 360 51 19 chr3 140826401 140826615 -77210543 + MIR SINE MIR 32 252 -10 3169 201 21 63 chr3 140826941 140827953 -77209205 - LTR5 LTR ERVK 0 969 1 31 0 0 0 chr3 140828415 140828446 -77208712 + AT_rich Low_complexity Low_complexity 1 31 0 2954 237 30 48 chr3 140828466 140828718 -77208440 - L1MB3 LINE L1 -30 6153 5898 1769 138 35 0 chr3 140828718 140829001 -77208157 - AluSx SINE Alu -17 295 3 2954 237 30 48 chr3 140829001 140829118 -77208040 - L1MB3 LINE L1 -285 5898 5780 1778 141 3 28 chr3 140829118 140829438 -77207720 - AluSx SINE Alu 0 312 1 2954 237 30 48 chr3 140829438 140830425 -77206733 - L1MB3 LINE L1 -403 5780 4818 2046 108 3 3 chr3 140830470 140830776 -77206382 + AluSp SINE Alu 1 306 -7 1062 240 8 77 chr3 140830856 140831063 -77206095 - L1MA4 LINE L1 -170 6130 5961 1647 157 0 4 chr3 140831063 140831344 -77205814 - AluSx SINE Alu -32 280 1 1062 240 8 77 chr3 140831344 140831527 -77205631 - L1MA4 LINE L1 -339 5961 5767 270 252 105 35 chr3 140831565 140831708 -77205450 + HsTC2 DNA Tc2 1628 1780 -118 1937 113 0 72 chr3 140831715 140832050 -77205108 + AluSp SINE Alu 3 313 0 378 234 76 55 chr3 140832200 140832345 -77204813 + MER5B DNA MER1_type 25 172 -6 681 226 56 0 chr3 140832450 140832645 -77204513 - MER6B DNA MER2_type 0 210 5 1234 131 27 23 chr3 140834537 140834758 -77202400 + AluSq SINE Alu 1 222 -91 821 230 282 3 chr3 140834762 140835092 -77202066 + SATR1 Satellite Satellite 48 469 -1 1980 151 110 42 chr3 140835120 140835624 -77201534 + SATR1 Satellite Satellite 1 538 -1 2139 198 114 10 chr3 140835642 140837267 -77199891 + SATR1 Satellite Satellite 1 1794 -27 4695 90 3 5 chr3 140837267 140837902 -77199256 - HERVE LTR ERV1 -2638 5175 4542 986 159 58 0 chr3 140838040 140838229 -77198929 - AluJo SINE Alu -7 305 106 226 158 0 0 chr3 140838231 140838269 -77198889 - Alu SINE Alu -87 215 178 1784 129 13 55 chr3 140838269 140838578 -77198580 - AluSx SINE Alu -14 298 3 1230 104 12 0 chr3 140838710 140838883 -77198275 + MER30 DNA MER1_type 1 175 -55 633 214 8 0 chr3 140838962 140839079 -77198079 - FLAM_A SINE Alu -18 124 7 1078 154 6 11 chr3 140839115 140839297 -77197861 + AluSx SINE Alu 1 181 -131 220 269 13 13 chr3 140889374 140889452 -77147706 - MIR SINE MIR -47 215 138 631 180 0 0 chr3 140889668 140889779 -77147379 - L1MA6 LINE L1 0 6300 6190 311 223 200 46 chr3 140889925 140890055 -77147103 + MIR SINE MIR 50 199 -63 218 275 296 28 chr3 140890236 140890378 -77146780 + MER5A DNA MER1_type 10 189 0 190 296 189 23 chr3 140890385 140890517 -77146641 - MIR SINE MIR -80 182 29 385 299 102 0 chr3 140891816 140891953 -77145205 - MIR3 SINE MIR -30 178 28 273 250 0 0 chr3 140892548 140892612 -77144546 + L2 LINE L2 2922 2985 -287 932 260 72 49 chr3 140893496 140893885 -77143273 - MLT1J2 LTR MaLR -42 408 11 22 0 0 0 chr3 140894521 140894543 -77142615 + AT_rich Low_complexity Low_complexity 1 22 0 328 277 60 67 chr3 140894784 140895088 -77142070 + MER102a DNA MER1_type 13 330 0 188 351 13 13 chr3 140895118 140895195 -77141963 + MIR SINE MIR 27 103 -105 696 244 30 89 chr3 140895576 140895847 -77141311 - MIR SINE MIR -5 257 3 1758 164 117 55 chr3 140895859 140896039 -77141119 - Charlie4a DNA MER1_type -1454 507 340 2845 165 35 10 chr3 140896039 140896560 -77140598 - L1MA7 LINE L1 0 6291 5758 1758 164 117 55 chr3 140896560 140896856 -77140302 - Charlie4a DNA MER1_type -1621 340 1 210 320 49 33 chr3 140896891 140897013 -77140145 - MER5A DNA MER1_type 0 189 66 415 290 174 0 chr3 140898657 140898795 -77138363 - MER5A DNA MER1_type 0 189 28 353 291 48 10 chr3 140899423 140899526 -77137632 + MIR3 SINE MIR 53 159 -49 267 269 9 9 chr3 140899579 140899687 -77137471 + T-rich Low_complexity Low_complexity 3 110 0 210 138 0 50 chr3 140899710 140899790 -77137368 + (TTTTA)n Simple_repeat Simple_repeat 5 80 0 303 183 18 37 chr3 140899816 140899980 -77137178 + T-rich Low_complexity Low_complexity 5 165 0 1151 199 14 0 chr3 140900265 140900481 -77136677 - AluJb SINE Alu -14 298 80 2286 96 7 0 chr3 140901410 140901703 -77135455 - AluSx SINE Alu -11 301 7 410 258 48 0 chr3 140901895 140902019 -77135139 + MIR SINE MIR 45 174 -88 505 204 292 0 chr3 140902261 140902398 -77134760 + MER5B DNA MER1_type 2 178 0 184 293 49 32 chr3 140902838 140902961 -77134197 + L2 LINE L2 1973 2097 -1217 529 220 89 65 chr3 140902964 140903132 -77134026 - MER69A DNA AcHobo 0 177 6 211 340 22 45 chr3 140903141 140903409 -77133749 + L2 LINE L2 2127 2388 -926 25 0 0 0 chr3 140903475 140903500 -77133658 + AT_rich Low_complexity Low_complexity 1 25 0 4711 129 35 20 chr3 140903500 140904291 -77132867 - L1PB4 LINE L1 -14 6142 5340 265 311 123 8 chr3 140904335 140904457 -77132701 + L2 LINE L2 2623 2758 -556 952 155 10 78 chr3 140905336 140905542 -77131616 - MER3 DNA MER1_type -6 203 12 531 271 8 0 chr3 140906702 140906824 -77130334 - MIR SINE MIR -67 141 19 22 0 0 0 chr3 140907313 140907335 -77129823 + AT_rich Low_complexity Low_complexity 1 22 0 709 207 167 0 chr3 140907939 140908113 -77129045 - MLT1B LTR MaLR 0 390 188 692 197 7 54 chr3 140908158 140908305 -77128853 - FLAM_A SINE Alu 0 142 3 614 166 146 20 chr3 140908315 140908466 -77128692 - MLT1B LTR MaLR -219 171 2 4374 133 25 16 chr3 140909143 140909835 -77127323 - MER49 LTR ERV1 0 923 226 1308 152 46 0 chr3 140909935 140910152 -77127006 - MER49 LTR ERV1 -696 227 1 295 22 0 43 chr3 140910655 140910701 -77126457 + (CACCC)n Simple_repeat Simple_repeat 3 46 0 587 279 116 30 chr3 140910719 140911020 -77126138 - LTR16A LTR ERVL -107 343 17 23 33 0 0 chr3 140911286 140911316 -77125842 + AT_rich Low_complexity Low_complexity 1 30 0 712 148 57 0 chr3 140912516 140912638 -77124520 + MLT1H LTR MaLR 393 521 -28 537 271 102 0 chr3 140912915 140913092 -77124066 + MLT1I LTR MaLR 215 409 0 577 269 73 66 chr3 140913092 140913345 -77123813 + L1ME3A LINE L1 5507 5766 -404 2126 129 7 0 chr3 140913345 140913647 -77123511 + AluSx SINE Alu 1 304 -8 577 269 73 66 chr3 140913647 140913847 -77123311 + L1ME3A LINE L1 5766 5963 -207 1344 259 96 8 chr3 140913929 140914327 -77122831 + LTR16A LTR ERVL 16 448 -2 988 230 17 145 chr3 140914927 140915356 -77121802 - L2 LINE L2 -4 3309 2947 2219 119 10 0 chr3 140915356 140915666 -77121492 + AluSq SINE Alu 1 313 0 988 230 17 145 chr3 140915666 140915719 -77121439 - L2 LINE L2 -366 2947 2889 256 311 52 59 chr3 140915828 140915963 -77121195 - L2 LINE L2 -385 2929 2796 998 268 249 31 chr3 140915971 140916448 -77120710 - MLT1G1 LTR MaLR 0 595 10 2744 249 64 22 chr3 140916465 140917231 -77119927 - L2 LINE L2 -533 2781 1984 360 307 28 40 chr3 140917245 140917421 -77119737 - L1M LINE L1 -2380 5428 5255 330 223 13 16 chr3 140917832 140917936 -77119222 + MLT1J2 LTR MaLR 59 189 -288 444 240 120 27 chr3 140917987 140918170 -77118988 + MLT1J LTR MaLR 311 510 -1 276 222 97 0 chr3 140918238 140918310 -77118848 - MLT1K LTR MaLR -4 584 506 369 304 69 69 chr3 140919277 140919537 -77117621 + L2 LINE L2 3053 3312 -1 21 36 0 0 chr3 140919995 140920023 -77117135 + AT_rich Low_complexity Low_complexity 1 28 0 1140 178 72 0 chr3 140920513 140920749 -77116409 + L1M4 LINE L1 4181 4433 -1713 1585 117 67 0 chr3 140920778 140921018 -77116140 + AluSx SINE Alu 21 276 -36 241 211 0 0 chr3 140921034 140921086 -77116072 + L1M4 LINE L1 4430 4481 -1665 581 244 34 28 chr3 140921097 140921273 -77115885 - L1MEd LINE L1 -5942 177 1 1176 262 190 27 chr3 140921309 140922014 -77115144 - HAL1 LINE L1 0 2507 1688 6520 250 97 27 chr3 140922096 140922609 -77114549 - L1MB8 LINE L1 0 6989 6513 2481 146 8 6 chr3 140922609 140922973 -77114185 + MLT1A1 LTR MaLR 1 365 0 6520 250 97 27 chr3 140922973 140923008 -77114150 - L1MB8 LINE L1 -476 6513 6482 2290 145 43 0 chr3 140923008 140923381 -77113777 + MLT1B LTR MaLR 1 389 -1 6520 250 97 27 chr3 140923381 140924488 -77112670 - L1MB8 LINE L1 -507 6482 5454 1673 189 0 17 chr3 140924488 140924789 -77112369 - AluJb SINE Alu -16 296 1 6520 250 97 27 chr3 140924789 140926903 -77110255 - L1MB8 LINE L1 -1535 5454 2942 385 172 32 65 chr3 140926897 140926990 -77110168 - L1MB8 LINE L1 -6753 106 17 * 510 242 86 5 chr3 140927069 140927267 -77109891 + L1ME LINE L1 4959 5172 -974 789 284 30 22 chr3 140927914 140928320 -77108838 + L1ME LINE L1 5186 5597 -573 250 299 33 28 chr3 140928310 140928521 -77108637 + L1M4 LINE L1 4493 4704 -1442 * 11953 43 0 0 chr3 140928811 140931058 -77106100 + L1PA5 LINE L1 3903 6153 -1 343 235 103 98 chr3 140931929 140932133 -77105025 + L1MC4 LINE L1 7836 8040 -2 8294 66 4 15 chr3 140932276 140933359 -77103799 + MER11C LTR ERVK 1 1071 0 2281 104 10 0 chr3 140934496 140934804 -77102354 - AluSq SINE Alu -2 311 1 6892 183 71 41 chr3 140934915 140936786 -77100372 + MER66-int LTR ERV1 205 2169 -4507 1939 132 10 3 chr3 140936771 140937067 -77100091 + MER66-int LTR ERV1 2333 2630 -4046 * 3180 166 23 73 chr3 140937224 140937967 -77099191 - MER67C LTR ERV1 -4 706 1 214 309 105 49 chr3 140938902 140939064 -77098094 + L3b LINE CR1 1247 1417 -166 1027 348 49 15 chr3 140939727 140940138 -77097020 + L2 LINE L2 2437 2861 -453 22 0 0 0 chr3 140940550 140940572 -77096586 + AT_rich Low_complexity Low_complexity 1 22 0 6145 87 7 12 chr3 140940856 140941743 -77095415 + L1PB2 LINE L1 5267 6148 -3 858 290 46 0 chr3 140942113 140942351 -77094807 - MIR SINE MIR -9 253 5 900 259 100 30 chr3 140943000 140943633 -77093525 - L1MEd LINE L1 -4702 1608 895 747 285 68 62 chr3 140943651 140944138 -77093020 - L1MEd LINE L1 -5266 853 364 233 276 11 35 chr3 140944265 140944352 -77092806 - L1MEd LINE L1 -5935 184 100 1927 153 44 36 chr3 140944354 140944719 -77092439 + THE1C LTR MaLR 8 375 0 243 115 33 33 chr3 140944722 140944783 -77092375 + (TA)n Simple_repeat Simple_repeat 1 61 0 225 0 0 0 chr3 140944939 140944964 -77092194 + (TA)n Simple_repeat Simple_repeat 2 26 0 2139 211 86 30 chr3 140945163 140945665 -77091493 + MLT1F LTR MaLR 11 540 -2 441 220 110 8 chr3 140945686 140945804 -77091354 + L2 LINE L2 3183 3312 -1 2447 110 21 9 chr3 140945840 140946364 -77090794 + L1PA15 LINE L1 5081 5606 -559 1003 88 0 0 chr3 140946351 140946488 -77090670 + L1PA15 LINE L1 5888 6024 -141 * 3706 113 15 0 chr3 140946490 140947031 -77090127 + L1PA15 LINE L1 5613 6161 -4 788 206 12 38 chr3 140947678 140947838 -77089320 - FRAM SINE Alu -10 156 1 205 322 93 42 chr3 140948232 140948330 -77088828 + L2 LINE L2 3141 3247 -25 276 30 0 0 chr3 140948330 140948363 -77088795 + (TA)n Simple_repeat Simple_repeat 1 33 0 205 322 93 42 chr3 140948363 140948382 -77088776 + L2 LINE L2 3247 3264 -8 22 56 0 0 chr3 140948853 140948889 -77088269 + AT_rich Low_complexity Low_complexity 1 36 0 1747 35 0 0 chr3 140949286 140949552 -77087606 - L1PA6 LINE L1 -718 5436 5171 5496 62 7 0 chr3 140949552 140950256 -77086902 + L1PA6 LINE L1 5445 6153 -1 243 235 0 94 chr3 140951178 140951263 -77085895 + MIR3 SINE MIR 131 207 -1 3436 253 93 94 chr3 140951555 140952889 -77084269 + L2 LINE L2 14 1347 -1967 1573 133 13 80 chr3 140952889 140953191 -77083967 + AluJo SINE Alu 1 282 -30 3436 253 93 94 chr3 140953191 140953846 -77083312 + L2 LINE L2 1347 2001 -1313 1506 246 60 67 chr3 140953897 140954758 -77082400 - HAL1 LINE L1 -867 1640 786 714 61 0 0 chr3 140954865 140954964 -77082194 - AluY SINE Alu -3 308 210 1071 65 0 0 chr3 140954989 140955127 -77082031 - L1PA14 LINE L1 -5 6156 6019 451 329 59 53 chr3 140955139 140955595 -77081563 - HAL1 LINE L1 -1821 686 228 4538 165 11 33 chr3 140955597 140957186 -77079972 + L1MA9 LINE L1 4538 6081 -231 503 180 70 31 chr3 140957188 140957316 -77079842 + L1MA9 LINE L1 6180 6312 0 1559 242 156 15 chr3 140957595 140958050 -77079108 + MLT1F LTR MaLR 1 519 -23 317 264 201 21 chr3 140958079 140958223 -77078935 + LTR50 LTR ERVL 385 554 -241 2476 190 147 9 chr3 140958336 140959031 -77078127 + L1M4 LINE L1 4461 5251 -895 257 339 33 0 chr3 140959028 140959208 -77077950 - L1M4 LINE L1 -2039 4107 3922 * 690 13 0 0 chr3 140959661 140959740 -77077418 + (TTCC)n Simple_repeat Simple_repeat 2 80 0 1605 162 4 0 chr3 140959742 140959995 -77077163 - AluJb SINE Alu -32 280 27 275 189 32 95 chr3 140960466 140960561 -77076597 - MLT1H LTR MaLR -30 519 431 253 208 0 65 chr3 140961749 140961826 -77075332 - MLT1K LTR MaLR -330 258 187 464 244 41 35 chr3 140962496 140962668 -77074490 - MLT1L LTR MaLR 0 615 443 287 215 15 15 chr3 140962781 140962846 -77074312 + L1MB1 LINE L1 436 500 -6075 2814 239 16 30 chr3 140963407 140964335 -77072823 + L1MB1 LINE L1 1166 2044 -4531 3336 134 18 9 chr3 140964342 140964908 -77072250 + L1MA4A LINE L1 5724 6294 -9 4979 164 36 33 chr3 140964921 140966899 -77070259 + L1MB1 LINE L1 4681 6659 -7 262 303 184 64 chr3 140966929 140967147 -77070011 - MLT1L LTR MaLR -370 245 2 216 158 0 0 chr3 140967428 140967466 -77069692 + T-rich Low_complexity Low_complexity 1 38 0 180 97 0 0 chr3 140967633 140967664 -77069494 + (TATG)n Simple_repeat Simple_repeat 2 32 0 246 171 0 0 chr3 140967667 140967708 -77069450 - L1MB1 LINE L1 -4 6164 6124 10424 160 88 12 chr3 140967968 140970120 -77067038 + L1MA2 LINE L1 2904 5220 -926 3057 86 94 20 chr3 140970116 140970617 -77066541 + L1MA2 LINE L1 5582 6119 -185 * 207 0 0 0 chr3 140970629 140970652 -77066506 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1979 107 0 17 chr3 140970652 140970941 -77066217 - AluSx SINE Alu -28 284 1 2326 82 35 9 chr3 140970957 140971298 -77065860 - L1PA11 LINE L1 -1 6173 5824 7702 136 10 19 chr3 140971403 140972731 -77064427 - L1P LINE L1 -968 5178 3863 1180 132 11 0 chr3 140972730 140972920 -77064238 + L1MA2 LINE L1 6105 6296 -8 2231 118 0 0 chr3 140973651 140973947 -77063211 - AluY SINE Alu -15 296 1 356 348 12 12 chr3 140974234 140974398 -77062760 - MER5B DNA MER1_type -8 170 7 280 332 183 14 chr3 140975039 140975247 -77061911 - MLT1K LTR MaLR -165 423 181 1831 233 63 4 chr3 140975594 140976057 -77061101 - MER110 LTR ERV1 0 491 2 297 228 109 0 chr3 140976091 140976183 -77060975 - MER113 DNA MER1_type? -57 464 363 24 0 0 0 chr3 140977477 140977501 -77059657 + AT_rich Low_complexity Low_complexity 1 24 0 203 136 0 222 chr3 140978530 140978555 -77058603 - L3 LINE CR1 -16 1561 1532 796 220 27 11 chr3 140978555 140978741 -77058417 + MER5A DNA MER1_type 1 189 0 203 136 0 222 chr3 140978741 140978796 -77058362 - L3 LINE CR1 -45 1532 1499 35 0 0 0 chr3 140979726 140979761 -77057397 + AT_rich Low_complexity Low_complexity 1 35 0 7065 48 10 1 chr3 140980482 140981372 -77055786 - L1PA8 LINE L1 0 6172 5275 471 253 123 6 chr3 140981704 140981866 -77055292 + MIR SINE MIR 81 261 -1 764 254 153 72 chr3 140982120 140982592 -77054566 - MLT1J LTR MaLR 0 511 2 10197 62 8 0 chr3 140982621 140984691 -77052467 + L1PA6 LINE L1 4075 6149 -5 319 269 48 70 chr3 140984871 140985065 -77052093 - MIR SINE MIR -50 212 24 396 266 214 6 chr3 140985212 140985385 -77051773 + MIR SINE MIR 29 237 -25 380 192 23 15 chr3 140986392 140986522 -77050636 + GA-rich Low_complexity Low_complexity 1 131 0 227 209 0 0 chr3 140986710 140986753 -77050405 + Charlie5 DNA MER1_type 2543 2585 -27 463 265 224 0 chr3 140986844 140986991 -77050167 + MER5A DNA MER1_type 9 188 -1 1528 182 35 0 chr3 140987198 140987511 -77049647 + MER33 DNA MER1_type 1 324 0 329 324 58 43 chr3 140987978 140988313 -77048845 + L1MC4a LINE L1 2339 2676 -3864 265 315 22 11 chr3 140988438 140988527 -77048631 - L2 LINE L2 -1 3312 3223 470 318 102 67 chr3 140988596 140988854 -77048304 + L1MC4a LINE L1 2823 3070 -3470 511 71 12 71 chr3 140988854 140988939 -77048219 - MADE1 DNA Mariner 0 80 1 470 318 102 67 chr3 140988939 140989678 -77047480 + L1MC4a LINE L1 3070 3855 -2685 467 278 109 71 chr3 140989805 140990284 -77046874 + L1P LINE L1 3606 4118 -2028 2590 55 0 0 chr3 140990284 140990591 -77046567 + AluY SINE Alu 1 307 -4 467 278 109 71 chr3 140990591 140990773 -77046385 + L1P LINE L1 4118 4292 -1854 792 291 92 31 chr3 140990965 140991378 -77045780 + L1MC4a LINE L1 5787 6224 -1978 296 147 314 0 chr3 140991722 140991824 -77045334 - ORSL DNA AcHobo 0 275 142 36 62 0 0 chr3 140991896 140991960 -77045198 + AT_rich Low_complexity Low_complexity 1 64 0 288 147 67 27 chr3 140992004 140992079 -77045079 - ORSL DNA AcHobo -186 89 12 513 215 44 37 chr3 140992089 140992224 -77044934 + MER58B DNA MER1_type 195 330 -11 22 80 0 0 chr3 140992662 140992712 -77044446 + AT_rich Low_complexity Low_complexity 1 50 0 349 194 146 10 chr3 140992978 140993081 -77044077 - MER97c DNA MER1_type? -923 167 51 545 213 73 15 chr3 140993177 140993313 -77043845 - L1ME2 LINE L1 -10 6154 6011 5658 167 58 7 chr3 140993327 140994466 -77042692 - L1MC1 LINE L1 -31 6582 5401 431 262 7 7 chr3 140994596 140994745 -77042413 - L1MC1 LINE L1 -1034 5392 5244 231 125 0 0 chr3 140994746 140994786 -77042372 + (TC)n Simple_repeat Simple_repeat 1 40 0 297 0 0 0 chr3 140994787 140994820 -77042338 + (TA)n Simple_repeat Simple_repeat 2 34 0 1941 174 26 5 chr3 140994891 140995271 -77041887 - L1MC1 LINE L1 -1252 5174 4787 1771 160 102 15 chr3 140995271 140995809 -77041349 - L1MC1 LINE L1 -3888 2719 2094 * 3748 188 32 35 chr3 140995808 140996559 -77040599 - L1MC1 LINE L1 -5652 774 26 302 275 44 0 chr3 140996564 140996655 -77040503 + MER94 DNA DNA 30 124 -10 577 254 69 12 chr3 140997354 140997527 -77039631 - MLT1K LTR MaLR -5 583 401 306 299 115 32 chr3 140997550 140997707 -77039451 - MLT1K LTR MaLR -335 253 84 2429 32 4 0 chr3 140997767 140998073 -77039085 - AluYa5 SINE Alu 0 307 1 297 290 30 10 chr3 140998073 140998173 -77038985 - MIR SINE MIR -49 213 112 859 189 67 0 chr3 140998245 140998409 -77038749 + MER5B DNA MER1_type 2 176 -2 233 274 0 0 chr3 140998996 140999047 -77038111 - MIR3 SINE MIR -49 159 109 263 231 0 0 chr3 140999254 140999306 -77037852 - L2 LINE L2 0 3313 3262 198 284 111 0 chr3 140999468 140999549 -77037609 + L2 LINE L2 3138 3227 -45 284 418 0 0 chr3 140999982 141000085 -77037073 - L2 LINE L2 -47 3225 3123 * 438 264 33 8 chr3 141000081 141000202 -77036956 + L2 LINE L2 3190 3313 0 285 252 30 69 chr3 141000881 141001012 -77036146 - L2 LINE L2 0 3313 3188 261 109 0 0 chr3 141001015 141001061 -77036097 + (TG)n Simple_repeat Simple_repeat 2 47 0 357 23 0 0 chr3 141001772 141001815 -77035343 + MADE1 DNA Mariner 29 71 -9 300 244 98 0 chr3 141002625 141002707 -77034451 - L3 LINE CR1 -1 1576 1487 252 172 151 65 chr3 141003219 141003312 -77033846 + L1ME LINE L1 5540 5640 -481 3915 174 39 29 chr3 141003695 141005227 -77031931 + L1MB7 LINE L1 4516 6056 -128 208 297 81 0 chr3 141005227 141005301 -77031857 + MIR3 SINE MIR 124 203 -5 551 287 6 12 chr3 141005783 141005947 -77031211 + MIR SINE MIR 100 262 0 21 57 0 0 chr3 141006063 141006098 -77031060 + AT_rich Low_complexity Low_complexity 1 35 0 1623 151 16 0 chr3 141006631 141006883 -77030275 - Tigger3(Golem) DNA MER2_type -1 3028 2773 684 166 0 160 chr3 141006882 141006961 -77030197 - Tigger3(Golem) DNA MER2_type -1089 142 103 * 1839 170 3 0 chr3 141006961 141007249 -77029909 - AluJb SINE Alu -23 289 1 684 166 0 160 chr3 141007249 141007338 -77029820 - Tigger3(Golem) DNA MER2_type -1128 103 1 268 135 0 0 chr3 141007522 141007559 -77029599 - MER63 DNA MER1_type -1023 38 2 632 257 60 6 chr3 141007787 141007970 -77029188 + LTR16A1 LTR ERVL 168 360 -97 2284 124 52 0 chr3 141008091 141008439 -77028719 - THE1C LTR MaLR -4 371 6 220 237 172 11 chr3 141009737 141009830 -77027328 + L2 LINE L2 3206 3313 0 546 231 105 7 chr3 141010126 141010269 -77026889 + MIR SINE MIR 12 168 -94 274 302 177 0 chr3 141010431 141010527 -77026631 - L2 LINE L2 -5 3267 3155 1116 290 114 29 chr3 141010632 141011497 -77025661 + L2 LINE L2 2259 3273 -40 267 269 0 0 chr3 141011555 141011663 -77025495 + (TGG)n Simple_repeat Simple_repeat 2 109 0 704 277 20 0 chr3 141012586 141012781 -77024377 + L1ME1 LINE L1 5964 6162 -4 183 172 16 31 chr3 141012908 141012972 -77024186 + CT-rich Low_complexity Low_complexity 2 64 0 1075 182 30 0 chr3 141013037 141013240 -77023918 + MER3 DNA MER1_type 1 209 0 1349 260 46 42 chr3 141013262 141013766 -77023392 - MLT1J LTR MaLR -2 509 4 429 264 59 14 chr3 141013774 141013994 -77023164 - L1ME4a LINE L1 -238 5883 5654 271 296 113 48 chr3 141014481 141014711 -77022447 - LTR16C LTR ERVL 0 491 247 203 50 0 75 chr3 141014712 141014752 -77022406 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 364 320 41 14 chr3 141014977 141015124 -77022034 + MER5B DNA MER1_type 27 177 -1 203 184 0 0 chr3 141015566 141015604 -77021554 + (TA)n Simple_repeat Simple_repeat 2 39 0 770 203 34 34 chr3 141015646 141015853 -77021305 + MER3 DNA MER1_type 3 209 0 986 288 148 13 chr3 141016348 141016931 -77020227 - L2 LINE L2 -2 3311 2644 288 363 0 10 chr3 141017016 141017118 -77020040 + MIR SINE MIR 32 132 -76 187 234 128 0 chr3 141018320 141018367 -77018791 + MIR SINE MIR 129 181 -81 565 280 187 5 chr3 141018651 141018865 -77018293 + MIR SINE MIR 7 259 -3 816 292 80 26 chr3 141019430 141019870 -77017288 - MLT1J LTR MaLR 0 511 1 231 167 0 0 chr3 141020410 141020452 -77016706 + (TA)n Simple_repeat Simple_repeat 2 43 0 274 234 22 131 chr3 141020682 141020819 -77016339 + L2 LINE L2 3191 3312 -1 239 256 372 8 chr3 141023483 141023604 -77013554 + MIR SINE MIR 92 256 -6 273 308 51 17 chr3 141024319 141024436 -77012722 + MIR3 SINE MIR 58 178 -30 223 188 14 14 chr3 141025067 141025136 -77012022 + CT-rich Low_complexity Low_complexity 4 72 0 243 0 0 0 chr3 141025575 141025602 -77011556 + (TG)n Simple_repeat Simple_repeat 2 28 0 732 300 94 33 chr3 141026104 141026497 -77010661 - LTR16A LTR ERVL -33 417 1 424 282 131 21 chr3 141026745 141026939 -77010219 + MIR SINE MIR 16 212 -50 267 31 0 0 chr3 141028385 141028417 -77008741 + (TG)n Simple_repeat Simple_repeat 2 33 0 318 327 33 13 chr3 141028503 141028653 -77008505 - MER102a DNA MER1_type 0 330 178 884 248 50 27 chr3 141029018 141029316 -77007842 + MER102b DNA MER1_type 36 340 -1 2507 67 0 16 chr3 141029350 141029665 -77007493 - AluY SINE Alu -1 310 1 346 118 0 29 chr3 141029862 141029930 -77007228 + (TA)n Simple_repeat Simple_repeat 2 67 0 2436 90 0 0 chr3 141030627 141030928 -77006230 - AluY SINE Alu -10 301 1 513 245 57 23 chr3 141031234 141031455 -77005703 + LTR16A1 LTR ERVL 194 457 0 212 406 15 8 chr3 141031727 141031860 -77005298 + L2 LINE L2 2712 2845 -469 2349 97 0 3 chr3 141031861 141032169 -77004989 - AluY SINE Alu -4 307 1 2093 104 0 34 chr3 141032263 141032561 -77004597 - AluSq SINE Alu -25 288 1 539 372 62 17 chr3 141032635 141032925 -77004233 + L2 LINE L2 2949 3251 -21 230 177 0 16 chr3 141032952 141033014 -77004144 + (TGAA)n Simple_repeat Simple_repeat 4 64 0 726 186 47 16 chr3 141034658 141034787 -77002371 + FLAM_A SINE Alu 1 133 0 535 263 55 54 chr3 141034826 141035255 -77001903 + L1ME3 LINE L1 5688 6098 -64 254 71 0 24 chr3 141036195 141036237 -77000921 + (CA)n Simple_repeat Simple_repeat 1 41 0 245 222 28 14 chr3 141036292 141036364 -77000794 + (TTTG)n Simple_repeat Simple_repeat 4 76 0 384 222 185 9 chr3 141036877 141036985 -77000173 + MIR SINE MIR 12 138 -124 321 301 44 9 chr3 141037331 141037444 -76999714 - L2 LINE L2 -2 3270 3154 253 329 0 13 chr3 141038201 141038277 -76998881 + CT-rich Low_complexity Low_complexity 2 76 0 752 292 77 65 chr3 141039371 141040041 -76997117 - L2 LINE L2 -18 3254 2567 273 277 0 0 chr3 141040135 141040200 -76996958 + MER96 DNA MER1_type? 110 174 -1 4545 152 35 52 chr3 141040329 141041334 -76995824 + MER11C LTR ERVK 1 1071 0 386 244 91 51 chr3 141041375 141041551 -76995607 + MER3 DNA MER1_type 27 209 0 * 1074 176 47 0 chr3 141041551 141041597 -76995561 - MER3 DNA MER1_type -153 56 2 945 183 12 122 chr3 141043132 141043378 -76993780 - MER20 DNA MER1_type 0 219 1 965 228 27 9 chr3 141044676 141044900 -76992258 - MIR SINE MIR -21 241 14 22 56 0 0 chr3 141048279 141048315 -76988843 + AT_rich Low_complexity Low_complexity 1 36 0 339 265 20 0 chr3 141048943 141049041 -76988117 + MER91B DNA MER1_type 91 190 0 284 127 0 0 chr3 141049358 141049413 -76987745 - L1MA7 LINE L1 0 6291 6237 2745 62 0 9 chr3 141049414 141049751 -76987407 - L1PA8 LINE L1 -1 6171 5838 284 127 0 0 chr3 141049980 141050035 -76987123 - L1MA7 LINE L1 0 6291 6237 2944 62 0 6 chr3 141050036 141050392 -76986766 - L1PA8 LINE L1 -1 6171 5818 638 245 37 0 chr3 141050846 141051009 -76986149 + MER45A DNA AcHobo 10 178 0 1206 169 22 59 chr3 141051036 141051308 -76985850 + L1MA9 LINE L1 6027 6288 -24 213 307 23 64 chr3 141051390 141051608 -76985550 + L2 LINE L2 2921 3129 -143 2488 133 24 14 chr3 141052594 141053008 -76984150 + L1MA8 LINE L1 5706 6123 -168 244 188 29 14 chr3 141053250 141053319 -76983839 + GA-rich Low_complexity Low_complexity 3 72 0 1060 279 59 47 chr3 141053424 141053992 -76983166 - L1ME4a LINE L1 -242 5879 5313 403 327 19 13 chr3 141054829 141054988 -76982170 + L2 LINE L2 2599 2758 -556 32 0 0 0 chr3 141055620 141055652 -76981506 + AT_rich Low_complexity Low_complexity 1 32 0 345 276 138 0 chr3 141056011 141056134 -76981024 + MIR3 SINE MIR 69 208 0 24 0 0 0 chr3 141056855 141056879 -76980279 + AT_rich Low_complexity Low_complexity 1 24 0 401 259 117 56 chr3 141057078 141057240 -76979918 + MIR SINE MIR 20 191 -71 24 32 0 0 chr3 141057297 141057328 -76979830 + AT_rich Low_complexity Low_complexity 1 31 0 201 353 43 17 chr3 141063966 141064082 -76973076 + L2 LINE L2 3195 3313 0 446 207 21 16 chr3 141064172 141064312 -76972846 - L1MD2 LINE L1 0 6166 6023 612 270 62 38 chr3 141065257 141065393 -76971765 - MIR SINE MIR 0 262 118 2136 115 14 0 chr3 141065393 141065689 -76971469 + AluSc SINE Alu 1 300 -9 612 270 62 38 chr3 141065689 141065763 -76971395 - MIR SINE MIR -144 118 47 426 236 99 71 chr3 141066804 141067016 -76970142 - L1ME LINE L1 -589 5532 5315 23 68 0 0 chr3 141067065 141067109 -76970049 + AT_rich Low_complexity Low_complexity 1 44 0 8804 95 4 2 chr3 141067109 141069113 -76968045 - L1PA8A LINE L1 -27 6104 4094 221 153 35 35 chr3 141069338 141069423 -76967735 + (TTA)n Simple_repeat Simple_repeat 2 86 0 2332 301 62 108 chr3 141069434 141071115 -76966043 + L2 LINE L2 1611 3206 -107 2103 126 10 0 chr3 141071115 141071416 -76965742 - AluSg SINE Alu -6 304 1 2332 301 62 108 chr3 141071416 141071507 -76965651 + L2 LINE L2 3206 3300 -13 354 45 0 0 chr3 141071507 141071551 -76965607 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 209 309 0 0 chr3 141071903 141071958 -76965200 + L2 LINE L2 3259 3313 0 198 0 0 0 chr3 141072461 141072483 -76964675 + (TG)n Simple_repeat Simple_repeat 1 22 0 425 296 169 14 chr3 141074354 141074496 -76962662 - MER5A DNA MER1_type -10 179 16 416 217 96 17 chr3 141074507 141074622 -76962536 + MER5C DNA MER1_type 1 124 -200 208 286 127 0 chr3 141074679 141074742 -76962416 + MER5C DNA MER1_type 248 318 -6 1001 173 42 23 chr3 141074757 141074971 -76962187 + MER20 DNA MER1_type 1 218 -1 1764 228 113 4 chr3 141075224 141075780 -76961378 - HsTC2 DNA Tc2 -3 1895 1279 366 322 14 14 chr3 141075789 141075932 -76961226 - HsTC2 DNA Tc2 -1750 148 6 4238 46 21 5 chr3 141077112 141077681 -76959477 - MER11B LTR ERVK -658 578 1 7871 50 3 0 chr3 141077681 141078678 -76958480 - HERVK11 LTR ERVK 0 7953 6954 * 49898 79 3 3 chr3 141078662 141085427 -76951731 - HERVK11 LTR ERVK -1188 6765 1 7732 72 5 8 chr3 141085466 141086527 -76950631 - MER11C LTR ERVK -14 1057 1 1924 153 3 34 chr3 141087983 141088303 -76948855 + AluJo SINE Alu 2 311 -1 667 109 0 64 chr3 141089120 141089230 -76947928 - AluSp/q SINE Alu -22 291 189 1406 116 37 61 chr3 141089452 141089746 -76947412 + L1MA2 LINE L1 6018 6304 0 269 361 30 48 chr3 141091345 141091511 -76945647 + MER5A DNA MER1_type 26 188 -1 1089 186 5 0 chr3 141091515 141091703 -76945455 + MER5A DNA MER1_type 1 189 0 703 178 71 59 chr3 141092543 141092712 -76944446 + MER20 DNA MER1_type 9 179 -40 362 309 69 20 chr3 141092996 141093200 -76943958 - L1ME4a LINE L1 -217 5904 5691 463 218 0 12 chr3 141093737 141093907 -76943251 + (TGG)n Simple_repeat Simple_repeat 1 168 0 403 215 25 13 chr3 141093922 141094080 -76943078 + (TGG)n Simple_repeat Simple_repeat 2 161 0 613 314 79 4 chr3 141094503 141094732 -76942426 - MIR SINE MIR -15 247 2 34 24 0 0 chr3 141094866 141094907 -76942251 + AT_rich Low_complexity Low_complexity 1 41 0 368 261 119 21 chr3 141095667 141095822 -76941336 - MIR SINE MIR -68 140 23 557 355 0 9 chr3 141096040 141096257 -76940901 + MIR SINE MIR 35 249 -13 1797 179 7 10 chr3 141097248 141097555 -76939603 - AluJo SINE Alu -5 307 2 3068 266 76 11 chr3 141098079 141099178 -76937980 + L1MEc LINE L1 47 1217 -5179 3661 226 35 5 chr3 141099202 141100218 -76936940 + L1MEc LINE L1 2659 3705 -2510 624 92 0 18 chr3 141100232 141100341 -76936817 - L1MA4 LINE L1 -1 6299 6193 796 174 44 91 chr3 141100344 141100790 -76936368 + L1MA4 LINE L1 3571 6165 -135 180 0 0 0 chr3 141101235 141101255 -76935903 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 422 191 135 67 chr3 141101677 141101855 -76935303 + MER117 DNA MER1_type 4 193 -4 607 329 71 0 chr3 141102853 141103078 -76934080 - MIR SINE MIR -19 243 3 37 23 0 0 chr3 141103645 141103689 -76933469 + AT_rich Low_complexity Low_complexity 1 44 0 276 53 0 0 chr3 141104188 141104226 -76932932 + (TG)n Simple_repeat Simple_repeat 2 39 0 740 235 52 0 chr3 141105697 141105910 -76931248 + L1ME LINE L1 5586 5809 -361 444 193 0 0 chr3 141105938 141106052 -76931106 + (TA)n Simple_repeat Simple_repeat 1 114 0 22 70 0 0 chr3 141106184 141106227 -76930931 + AT_rich Low_complexity Low_complexity 1 43 0 319 265 7 3 chr3 141106263 141106377 -76930781 + L1MDb LINE L1 23 459 -5937 3276 96 24 6 chr3 141106663 141107154 -76930004 + LTR3b LTR ERVK 1 500 0 300 79 0 0 chr3 141107154 141107192 -76929966 + LTR3b LTR ERVK 463 500 0 1999 210 88 70 chr3 141107362 141107848 -76929310 + L1MDb LINE L1 792 1267 -5139 1765 190 19 16 chr3 141107848 141108159 -76928999 + AluJb SINE Alu 1 312 0 1999 210 88 70 chr3 141108159 141108740 -76928418 + L1MDb LINE L1 1267 1856 -4550 337 279 0 58 chr3 141108908 141109062 -76928096 - MIR SINE MIR -24 238 94 1341 194 89 40 chr3 141109165 141109537 -76927621 - MLT1B LTR MaLR 0 390 1 681 208 5 88 chr3 141109583 141109775 -76927383 + MER5B DNA MER1_type 3 178 0 225 325 12 12 chr3 141110123 141110203 -76926955 - MIR3 SINE MIR -38 170 91 781 180 0 0 chr3 141110704 141110826 -76926332 + MER5A DNA MER1_type 2 123 -66 889 272 54 0 chr3 141111115 141111354 -76925804 + MIR SINE MIR 11 262 0 348 333 9 0 chr3 141111437 141111542 -76925616 + MIR3 SINE MIR 53 158 -50 1215 235 115 84 chr3 141111544 141112152 -76925006 + Charlie2 DNA MER1_type 1 627 -2155 1850 191 19 11 chr3 141112156 141112518 -76924640 + MLT1A1 LTR MaLR 1 365 0 249 30 45 61 chr3 141112543 141112609 -76924549 + (CAAAAA)n Simple_repeat Simple_repeat 3 67 0 1508 228 105 30 chr3 141112674 141113887 -76923271 + Charlie2a DNA MER1_type 1475 2861 -1 515 276 44 48 chr3 141113910 141114160 -76922998 - LTR16A1 LTR ERVL 0 457 209 7851 87 3 2 chr3 141114175 141116054 -76921104 - L1PA7 LINE L1 0 6154 4268 3560 85 2 0 chr3 141116054 141116569 -76920589 + L1P LINE L1 1692 2207 -3939 303 28 0 0 chr3 141118389 141118425 -76918733 + (TG)n Simple_repeat Simple_repeat 2 37 0 453 316 105 22 chr3 141118461 141118831 -76918327 + L1ME3A LINE L1 5483 5883 -287 5241 41 0 2 chr3 141119370 141120004 -76917154 - L1PA4 LINE L1 0 6155 5523 2383 65 0 3 chr3 141120143 141120436 -76916722 + AluY SINE Alu 1 292 -19 416 286 0 0 chr3 141121231 141121329 -76915829 + L2 LINE L2 3215 3312 -1 581 258 152 7 chr3 141122563 141122714 -76914444 + MER5A DNA MER1_type 17 189 0 274 350 64 77 chr3 141122791 141123102 -76914056 - L2 LINE L2 -22 3250 2944 388 336 157 4 chr3 141123202 141123470 -76913688 - L2 LINE L2 -431 2883 2575 640 137 11 0 chr3 141123576 141123671 -76913487 - MER5A DNA MER1_type 0 189 94 472 254 41 0 chr3 141123677 141123799 -76913359 - MER5B DNA MER1_type -27 151 25 424 250 43 21 chr3 141124054 141124194 -76912964 - MIR SINE MIR -11 251 109 430 289 71 53 chr3 141124278 141124522 -76912636 + MIR3 SINE MIR 2 262 0 232 270 27 40 chr3 141124538 141124612 -76912546 + MIR3 SINE MIR 127 199 -9 252 317 0 12 chr3 141125055 141125137 -76912021 + MIR SINE MIR 64 144 -118 497 289 38 6 chr3 141125867 141125940 -76911218 + MER5A DNA MER1_type 2 71 -118 1857 117 0 0 chr3 141125940 141126187 -76910971 + AluSc SINE Alu 1 247 -62 497 289 38 6 chr3 141126187 141126272 -76910886 + MER5A DNA MER1_type 71 165 -24 357 262 82 49 chr3 141126300 141126416 -76910742 - HAL1 LINE L1 -9 2498 2387 1463 225 39 11 chr3 141126416 141126771 -76910387 + MLT1A1 LTR MaLR 1 365 0 357 262 82 49 chr3 141126771 141126898 -76910260 - HAL1 LINE L1 -120 2387 2247 530 229 38 33 chr3 141127207 141127390 -76909768 - HAL1 LINE L1 -723 1784 1601 2105 176 36 33 chr3 141127405 141127855 -76909303 + MLT1C LTR MaLR 17 467 0 2031 149 7 0 chr3 141127885 141128180 -76908978 + AluSx SINE Alu 1 297 -15 430 263 32 13 chr3 141128201 141128357 -76908801 - HAL1 LINE L1 -943 1564 1406 459 245 7 7 chr3 141128391 141128530 -76908628 - HAL1 LINE L1 -1100 1407 1269 210 224 0 35 chr3 141128573 141128631 -76908527 + T-rich Low_complexity Low_complexity 4 59 0 446 244 110 0 chr3 141128646 141128810 -76908348 - HAL1 LINE L1 -1560 947 766 456 328 74 63 chr3 141128819 141129117 -76908041 - HAL1 LINE L1 -2108 399 95 2317 138 35 26 chr3 141129117 141129334 -76907824 - MSTB1 LTR MaLR 0 432 219 2230 117 16 0 chr3 141129334 141129642 -76907516 + AluSq SINE Alu 1 313 0 2317 138 35 26 chr3 141129642 141129852 -76907306 - MSTB1 LTR MaLR -213 219 1 456 328 74 63 chr3 141129852 141129931 -76907227 - HAL1 LINE L1 -2412 95 18 3533 144 71 6 chr3 141130144 141130818 -76906340 - L1MA8 LINE L1 -17 6274 5557 1984 115 28 7 chr3 141131624 141131911 -76905247 + AluSc SINE Alu 1 293 -16 604 238 6 6 chr3 141131934 141132102 -76905056 - MER3 DNA MER1_type 0 2408 2241 694 156 0 0 chr3 141132121 141132243 -76904915 - MER3 DNA MER1_type -47 162 41 265 174 58 14 chr3 141132457 141132526 -76904632 - L1ME LINE L1 -429 5692 5621 315 100 0 50 chr3 141132535 141132595 -76904563 - MLT2B1 LTR ERVL 0 520 464 189 0 0 0 chr3 141132596 141132617 -76904541 + (CA)n Simple_repeat Simple_repeat 2 22 0 314 182 0 13 chr3 141132617 141132694 -76904464 + (TA)n Simple_repeat Simple_repeat 2 77 0 312 333 0 0 chr3 141132694 141132790 -76904368 - L1MC4 LINE L1 -1333 6709 6614 * 336 272 0 22 chr3 141132784 141132876 -76904282 + L1MC4 LINE L1 6614 6703 -1339 319 322 0 0 chr3 141132800 141132890 -76904268 - L1MC4 LINE L1 -1339 6703 6614 * 568 258 8 0 chr3 141132948 141133076 -76904082 - MLT2D LTR ERVL -98 316 188 247 146 36 0 chr3 141133076 141133131 -76904027 + T-rich Low_complexity Low_complexity 5 61 0 2438 61 0 23 chr3 141133144 141133454 -76903704 - AluY SINE Alu -8 303 1 1052 158 20 5 chr3 141133454 141133650 -76903508 - MLT2D LTR ERVL -215 199 1 410 359 73 9 chr3 141133690 141133910 -76903248 - L1ME LINE L1 -571 5550 5317 295 299 21 21 chr3 141134104 141134201 -76902957 + L3 LINE CR1 1421 1517 -60 369 346 23 8 chr3 141134788 141134918 -76902240 - L2 LINE L2 -4 3309 3178 351 323 216 11 chr3 141135179 141135541 -76901617 + L1 LINE L1 4088 4523 -1623 316 76 15 136 chr3 141135855 141135921 -76901237 + MLT2D LTR ERVL 299 356 -58 617 204 8 15 chr3 141135957 141136089 -76901069 - MER94 DNA DNA -1 133 3 325 256 106 44 chr3 141136181 141136408 -76900750 - L1ME LINE L1 -495 5626 5386 314 294 63 21 chr3 141136862 141137005 -76900153 - L1ME LINE L1 -733 5388 5260 1266 286 87 19 chr3 141137280 141137763 -76899395 + MLT1G1 LTR MaLR 73 588 -7 330 333 76 29 chr3 141138477 141138648 -76898510 + MIR3 SINE MIR 9 187 -21 2248 98 0 14 chr3 141140071 141140368 -76896790 - AluSx SINE Alu -19 293 1 2115 161 29 23 chr3 141140861 141141303 -76895855 + L1MA9 LINE L1 5865 6309 -3 1074 134 74 52 chr3 141141348 141141579 -76895579 + MLT1B LTR MaLR 112 347 -43 1033 199 0 0 chr3 141142477 141142673 -76894485 + LTR16C LTR ERVL 278 473 -18 286 68 45 0 chr3 141142766 141142810 -76894348 - MLT1G1 LTR MaLR -548 47 2 231 218 36 146 chr3 141142874 141142984 -76894174 + MIR SINE MIR 43 140 -122 832 261 227 39 chr3 141144522 141145231 -76891927 + L2 LINE L2 2450 3311 -2 560 308 62 39 chr3 141145245 141145553 -76891605 + L2 LINE L2 2174 2488 -826 429 293 258 29 chr3 141145550 141145926 -76891232 + L2 LINE L2 2811 3272 0 * 216 148 0 131 chr3 141146018 141146053 -76891105 + L2 LINE L2 3261 3286 -27 8257 122 18 4 chr3 141146053 141147335 -76889823 + HSMAR2 DNA Mariner 3 1302 0 216 148 0 131 chr3 141147335 141147360 -76889798 + L2 LINE L2 3286 3313 0 966 143 6 11 chr3 141148487 141148669 -76888489 - L1MA4A LINE L1 -4 6299 6119 180 0 0 0 chr3 141148872 141148892 -76888266 + (TTG)n Simple_repeat Simple_repeat 2 21 0 523 334 118 27 chr3 141149385 141149714 -76887444 + L2 LINE L2 2909 3267 -5 25 65 0 0 chr3 141150276 141150322 -76886836 + GC_rich Low_complexity Low_complexity 1 46 0 2164 69 7 0 chr3 141151691 141151965 -76885193 - AluSp SINE Alu -15 298 23 27 29 0 0 chr3 141152144 141152178 -76884980 + AT_rich Low_complexity Low_complexity 1 34 0 322 226 169 8 chr3 141152829 141152953 -76884205 + MIR SINE MIR 107 250 -12 323 286 67 25 chr3 141153681 141153800 -76883358 + L2 LINE L2 3188 3311 -2 1424 255 71 5 chr3 141154814 141155222 -76881936 + LTR16C LTR ERVL 52 486 -5 639 331 131 26 chr3 141155671 141156507 -76880651 + L2 LINE L2 2178 3096 -176 432 249 152 18 chr3 141156639 141156804 -76880354 + MIR SINE MIR 73 259 -3 277 305 201 0 chr3 141158182 141158336 -76878822 - MIR SINE MIR -31 231 47 230 245 0 0 chr3 141158676 141158725 -76878433 - MIR3 SINE MIR -3 205 157 488 310 50 36 chr3 141158781 141159120 -76878038 + L2 LINE L2 2737 3079 -193 889 256 151 25 chr3 141159156 141159794 -76877364 - L2 LINE L2 -8 3305 2589 531 312 52 28 chr3 141159974 141160224 -76876934 + MIR SINE MIR 4 259 -3 281 347 53 12 chr3 141160377 141160547 -76876611 - MIR SINE MIR -10 252 76 21 0 0 0 chr3 141160822 141160843 -76876315 + AT_rich Low_complexity Low_complexity 1 21 0 2112 136 55 3 chr3 141161299 141161645 -76875513 - THE1B LTR MaLR 0 364 1 1382 206 97 19 chr3 141161920 141162332 -76874826 - L1ME3A LINE L1 0 6170 5727 234 0 0 0 chr3 141162706 141162732 -76874426 + (A)n Simple_repeat Simple_repeat 1 26 0 25 31 0 0 chr3 141162732 141162764 -76874394 + AT_rich Low_complexity Low_complexity 1 32 0 1963 43 8 0 chr3 141162764 141163017 -76874141 - L1PA5 LINE L1 0 6154 5900 2241 80 10 3 chr3 141163017 141163316 -76873842 - AluY SINE Alu -10 301 1 567 208 220 0 chr3 141165585 141165758 -76871400 - MIR SINE MIR 0 262 52 991 280 197 16 chr3 141165885 141166653 -76870505 + L2 LINE L2 2401 3313 0 603 269 42 12 chr3 141166947 141167114 -76870044 - MIR SINE MIR -50 212 41 365 268 65 12 chr3 141167740 141167908 -76869250 + L1MEd LINE L1 1029 1205 -4914 848 239 82 20 chr3 141168937 141169243 -76867915 + LTR16A1 LTR ERVL 131 455 -2 800 223 47 33 chr3 141170251 141170462 -76866696 - MER20 DNA MER1_type 0 219 6 213 288 0 0 chr3 141171888 141171961 -76865197 + (TA)n Simple_repeat Simple_repeat 1 73 0 232 287 0 40 chr3 141172120 141172221 -76864937 + A-rich Low_complexity Low_complexity 5 101 0 2579 166 148 15 chr3 141173222 141173361 -76863797 - L1MCa LINE L1 -3876 2731 2612 2382 98 0 3 chr3 141173361 141173666 -76863492 - AluSc SINE Alu -5 304 1 2579 166 148 15 chr3 141173666 141174386 -76862772 - L1MCa LINE L1 -3995 2612 1741 * 3807 185 60 40 chr3 141174383 141175765 -76861393 - L1MA9 LINE L1 -38 6274 4870 1712 169 154 20 chr3 141175764 141175915 -76861243 - L1MCa LINE L1 -4761 1665 1536 * 2291 89 0 10 chr3 141175915 141176217 -76860941 - AluSq SINE Alu -12 301 3 1712 169 154 20 chr3 141176217 141176557 -76860601 - L1MCa LINE L1 -4890 1536 1108 4446 134 105 76 chr3 141176560 141178077 -76859081 - pTR5 LTR ERV1 0 2438 741 538 161 59 0 chr3 141178077 141178195 -76858963 - L1MCa LINE L1 -5315 1111 987 3975 169 108 13 chr3 141178295 141179218 -76857940 - L1P LINE L1 -1135 5011 4001 2179 94 12 0 chr3 141179218 141179537 -76857621 - THE1A LTR MaLR 0 355 33 327 301 7 70 chr3 141179875 141179967 -76857191 + MIR3 SINE MIR 61 142 -66 2936 6 0 0 chr3 141179967 141180284 -76856874 + AluYb8 SINE Alu 1 317 -1 327 301 7 70 chr3 141180284 141180334 -76856824 + MIR3 SINE MIR 142 194 -14 600 290 50 36 chr3 141182771 141183032 -76854126 - MIR SINE MIR 0 262 4 247 265 205 26 chr3 141184751 141184868 -76852290 + MIR3 SINE MIR 10 147 -61 21 36 0 0 chr3 141184933 141184961 -76852197 + AT_rich Low_complexity Low_complexity 1 28 0 363 211 103 76 chr3 141185217 141185440 -76851718 + L1 LINE L1 3124 3352 -2794 373 371 0 7 chr3 141185469 141185620 -76851538 + L1 LINE L1 3545 3694 -2452 238 237 17 0 chr3 141185723 141185782 -76851376 + MIR SINE MIR 144 203 -59 224 303 127 28 chr3 141187320 141187469 -76849689 + MIR3 SINE MIR 40 200 -8 580 326 37 16 chr3 141187518 141187760 -76849398 - MIR SINE MIR -2 260 14 384 257 185 36 chr3 141188041 141188263 -76848895 + MIR SINE MIR 7 261 -1 265 237 51 70 chr3 141188794 141188950 -76848208 - LTR16C LTR ERVL -7 484 332 287 278 78 11 chr3 141189777 141189867 -76847291 - MIR SINE MIR -57 151 56 1214 208 143 46 chr3 141193141 141193555 -76843603 + LTR16A1 LTR ERVL 4 457 0 338 247 165 0 chr3 141194900 141194997 -76842161 + MER81 DNA DNA 2 114 0 2273 90 0 34 chr3 141195026 141195348 -76841810 - AluY SINE Alu 0 311 1 475 298 102 19 chr3 141195714 141195929 -76841229 + MIR SINE MIR 22 254 -8 662 240 158 0 chr3 141196217 141196363 -76840795 - MER5A DNA MER1_type -2 187 19 1271 158 0 50 chr3 141196395 141196616 -76840542 - AluJb SINE Alu -18 294 85 216 0 0 0 chr3 141197467 141197491 -76839667 + (T)n Simple_repeat Simple_repeat 1 24 0 207 0 0 0 chr3 141198653 141198676 -76838482 + (T)n Simple_repeat Simple_repeat 1 23 0 197 296 0 0 chr3 141199650 141199704 -76837454 + L2 LINE L2 2708 2761 -553 482 290 28 23 chr3 141199733 141199909 -76837249 + MER5B DNA MER1_type 2 178 0 544 250 67 18 chr3 141199923 141200087 -76837071 - MER5A DNA MER1_type -6 183 12 563 231 55 33 chr3 141200110 141200292 -76836866 + L2 LINE L2 3127 3312 -1 4429 128 34 4 chr3 141200479 141201234 -76835924 - L1PA15 LINE L1 -1 6164 5387 12290 184 44 6 chr3 141201489 141204224 -76832934 - L1PA15 LINE L1 -749 5397 2558 998 221 44 12 chr3 141205446 141205695 -76831463 + MIR SINE MIR 3 259 -3 390 309 118 7 chr3 141205869 141206005 -76831153 - L2 LINE L2 -1 3271 3121 348 300 122 26 chr3 141206893 141207123 -76830035 + MIR SINE MIR 9 260 -2 190 376 111 37 chr3 141207800 141207989 -76829169 - L2 LINE L2 -39 3233 3031 230 346 143 32 chr3 141208124 141208592 -76828566 - L2 LINE L2 -431 2883 2364 1070 208 0 45 chr3 141208639 141208860 -76828298 - AluJo SINE Alu -15 297 87 456 324 171 6 chr3 141208860 141209341 -76827817 - L2 LINE L2 -1024 2290 1731 422 326 107 21 chr3 141209804 141210132 -76827026 - L1 LINE L1 -1606 4540 4185 238 273 0 15 chr3 141210927 141210993 -76826165 - L2 LINE L2 -1 3271 3207 397 240 96 10 chr3 141211008 141211112 -76826046 + L2 LINE L2 3201 3313 0 2416 71 0 0 chr3 141211277 141211571 -76825587 + AluY SINE Alu 1 294 -17 2191 119 0 3 chr3 141211877 141212171 -76824987 + AluSx SINE Alu 1 293 -19 193 337 24 24 chr3 141212187 141212270 -76824888 - L2 LINE L2 -661 2653 2571 188 121 30 0 chr3 141212448 141212481 -76824677 - L2 LINE L2 -1054 2260 2227 498 234 134 29 chr3 141213710 141213881 -76823277 - MER5A DNA MER1_type 0 189 1 2802 179 64 34 chr3 141213984 141214659 -76822499 + L1MC3 LINE L1 7091 7785 0 406 169 26 0 chr3 141215747 141215824 -76821334 - MIR SINE MIR -71 191 113 347 279 101 32 chr3 141216565 141216784 -76820374 + L1M4 LINE L1 4313 4546 -1600 303 283 71 9 chr3 141217136 141217249 -76819909 + L1ME4a LINE L1 5969 6088 -33 24 32 0 0 chr3 141217261 141217292 -76819866 + AT_rich Low_complexity Low_complexity 1 31 0 661 24 12 0 chr3 141217434 141217519 -76819639 + L1P LINE L1 13 98 -6048 * 25579 29 0 0 chr3 141217517 141222036 -76815122 + L1P LINE L1 908 5426 -729 1724 83 0 0 chr3 141222137 141222342 -76814816 - AluSc SINE Alu -104 205 1 818 223 66 0 chr3 141222351 141222548 -76814610 - MLT2B1 LTR ERVL -310 210 1 2332 171 13 10 chr3 141222745 141223136 -76814022 + MSTD LTR MaLR 5 396 0 2349 98 0 0 chr3 141224292 141224599 -76812559 + AluY SINE Alu 1 307 -4 1227 255 74 50 chr3 141224994 141225136 -76812022 + L1ME3A LINE L1 5564 5701 -469 5205 101 31 7 chr3 141225136 141225872 -76811286 - L1PA13 LINE L1 0 6163 5410 1227 255 74 50 chr3 141225872 141226285 -76810873 + L1ME3A LINE L1 5701 6132 -38 * 1388 204 10 10 chr3 141226281 141226575 -76810583 + L1M4 LINE L1 4647 4940 -1206 180 217 0 0 chr3 141227036 141227082 -76810076 + (GGGTG)n Simple_repeat Simple_repeat 4 49 0 2042 124 0 3 chr3 141228083 141228366 -76808792 + AluSx SINE Alu 1 282 -30 246 62 0 0 chr3 141228376 141228408 -76808750 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1084 168 15 10 chr3 141228876 141229072 -76808086 + AluJb SINE Alu 85 284 -28 3379 165 54 27 chr3 141229072 141229090 -76808068 + L1MA9 LINE L1 5590 5606 -706 2597 36 0 13 chr3 141229090 141229398 -76807760 + AluY SINE Alu 1 304 -7 3379 165 54 27 chr3 141229398 141230083 -76807075 + L1MA9 LINE L1 5606 6312 0 2111 108 6 32 chr3 141230811 141231126 -76806032 + AluSg SINE Alu 1 307 -3 2395 132 0 0 chr3 141231231 141231603 -76805555 + L1HS LINE L1 5784 6155 0 345 109 0 0 chr3 141231739 141231803 -76805355 + (TAAA)n Simple_repeat Simple_repeat 1 64 0 2118 152 0 0 chr3 141232490 141232799 -76804359 + AluSx SINE Alu 1 309 -3 198 336 121 27 chr3 141232915 141233064 -76804094 - L2 LINE L2 -3 3269 3107 234 150 0 0 chr3 141234264 141234304 -76802854 + (CCCCCT)n Simple_repeat Simple_repeat 6 45 0 428 230 58 101 chr3 141235004 141235022 -76802136 - HAL1 LINE L1 -22 2485 2468 1092 158 8 96 chr3 141235022 141235262 -76801896 - MER20 DNA MER1_type 0 219 1 428 230 58 101 chr3 141235262 141235500 -76801658 - HAL1 LINE L1 -39 2468 2240 4736 246 116 31 chr3 141235575 141236570 -76800588 - HAL1 LINE L1 -613 1894 985 1834 167 10 0 chr3 141236570 141236870 -76800288 + AluJo SINE Alu 1 303 -9 4736 246 116 31 chr3 141236870 141237609 -76799549 - HAL1 LINE L1 -1522 985 13 22 0 0 0 chr3 141237635 141237657 -76799501 + AT_rich Low_complexity Low_complexity 1 22 0 355 185 62 0 chr3 141238067 141238148 -76799010 + L1ME4a LINE L1 5600 5685 -436 493 275 142 13 chr3 141238393 141238695 -76798463 + L1ME4a LINE L1 5751 6091 -30 21 0 0 0 chr3 141238728 141238749 -76798409 + AT_rich Low_complexity Low_complexity 1 21 0 387 0 0 0 chr3 141239404 141239447 -76797711 + (TG)n Simple_repeat Simple_repeat 2 44 0 257 224 127 82 chr3 141241182 141241316 -76795842 - MER69 DNA AcHobo 0 2526 2387 328 188 9 116 chr3 141241321 141241433 -76795725 - MER69 DNA AcHobo -1089 137 38 1147 146 88 0 chr3 141241433 141241625 -76795533 + MER3 DNA MER1_type 1 209 0 231 206 11 22 chr3 141241682 141241774 -76795384 + (TA)n Simple_repeat Simple_repeat 1 91 0 22 56 0 0 chr3 141242376 141242412 -76794746 + AT_rich Low_complexity Low_complexity 1 36 0 1633 164 78 0 chr3 141242470 141242738 -76794420 - AluJb SINE Alu -23 289 1 590 270 88 72 chr3 141243074 141243261 -76793897 - L2 LINE L2 0 3313 3131 389 48 0 65 chr3 141243261 141243323 -76793835 + L1PA2 LINE L1 6098 6155 0 590 270 88 72 chr3 141243323 141243455 -76793703 - L2 LINE L2 -182 3131 3003 2275 89 3 3 chr3 141243455 141243747 -76793411 + AluSg SINE Alu 1 292 -18 590 270 88 72 chr3 141243747 141244156 -76793002 - L2 LINE L2 -310 3003 2579 914 249 3 25 chr3 141245500 141245756 -76791402 - MIR SINE MIR -3 259 15 305 281 59 27 chr3 141246967 141247085 -76790073 - MIR SINE MIR -74 134 6 2197 75 41 0 chr3 141247502 141247796 -76789362 + AluY SINE Alu 1 306 -5 278 335 137 30 chr3 141247819 141248147 -76789011 + L3b LINE CR1 1213 1575 -8 281 270 117 9 chr3 141248185 141248296 -76788862 + MIR SINE MIR 125 247 -15 2471 82 0 3 chr3 141248307 141248613 -76788545 + AluSc SINE Alu 1 305 -4 363 226 29 59 chr3 141249627 141249729 -76787429 - L2 LINE L2 -5 3308 3210 207 253 84 63 chr3 141251369 141251464 -76785694 + MIR3 SINE MIR 105 201 -7 2378 163 26 43 chr3 141251831 141252296 -76784862 - LTR8A LTR ERV1 0 727 271 798 251 37 5 chr3 141252656 141252847 -76784311 - MER57A-int LTR ERV1 -7338 199 3 295 213 0 0 chr3 141252854 141252915 -76784243 - MER57A LTR ERV1 -9 394 334 4214 159 90 53 chr3 141252915 141254538 -76782620 - MER52A LTR ERV1 0 1755 1 927 202 186 37 chr3 141254538 141254755 -76782403 - MER57B LTR ERV1 -66 368 86 216 0 0 0 chr3 141254755 141254779 -76782379 + (CAA)n Simple_repeat Simple_repeat 2 25 0 927 202 186 37 chr3 141254779 141254881 -76782277 - MER57B LTR ERV1 -348 86 1 281 169 0 41 chr3 141255412 141255483 -76781675 + MIR SINE MIR 86 152 -62 511 213 207 6 chr3 141255557 141255721 -76781437 - MIR SINE MIR -43 219 23 200 260 0 0 chr3 141256585 141256635 -76780523 - MIR SINE MIR -2 260 211 510 284 131 0 chr3 141256690 141256873 -76780285 - MIR SINE MIR -30 232 26 485 234 88 36 chr3 141257767 141257954 -76779204 - MIR3 SINE MIR -7 201 4 231 257 124 9 chr3 141258017 141258122 -76779036 + MIR3 SINE MIR 84 200 -8 512 284 155 0 chr3 141260446 141260594 -76776564 + MER5A DNA MER1_type 18 188 -1 286 244 12 23 chr3 141261155 141261241 -76775917 - L2 LINE L2 -3 3310 3226 219 281 0 18 chr3 141262314 141262371 -76774787 + CT-rich Low_complexity Low_complexity 1 56 0 862 280 45 35 chr3 141262525 141263606 -76773552 + L1MC4 LINE L1 6741 7890 -152 261 252 139 35 chr3 141263662 141263777 -76773381 + L1MC4 LINE L1 7902 8028 -14 394 269 114 46 chr3 141263820 141264240 -76772918 + L1MEd LINE L1 1019 1569 -921 2128 121 0 7 chr3 141264422 141264719 -76772439 - AluSx SINE Alu -17 295 1 24 53 0 0 chr3 141264843 141264881 -76772277 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr3 141265176 141265202 -76771956 + AT_rich Low_complexity Low_complexity 1 26 0 1200 256 61 79 chr3 141265282 141265375 -76771783 + L1MEd LINE L1 2114 2207 -3922 2365 84 0 3 chr3 141265375 141265671 -76771487 + AluSq SINE Alu 1 295 -18 1200 256 61 79 chr3 141265671 141266293 -76770865 + L1MEd LINE L1 2207 2811 -3318 2099 118 7 0 chr3 141266293 141266580 -76770578 + AluSx SINE Alu 1 289 -23 1200 256 61 79 chr3 141266580 141266783 -76770375 + L1MEd LINE L1 2811 3016 -3113 21 0 0 0 chr3 141266881 141266902 -76770256 + AT_rich Low_complexity Low_complexity 1 21 0 719 258 88 27 chr3 141267536 141267943 -76769215 + MER45C DNA AcHobo 38 563 -390 1474 134 60 0 chr3 141267943 141268159 -76768999 - MER30 DNA MER1_type 0 230 2 719 258 88 27 chr3 141268159 141268216 -76768942 + MER45C DNA AcHobo 563 615 -338 366 231 261 0 chr3 141268280 141268414 -76768744 + MER45C DNA AcHobo 785 953 0 1301 76 0 0 chr3 141269586 141269744 -76767414 - AluSg/x SINE Alu -15 297 140 36491 29 0 0 chr3 141269846 141275029 -76762129 + L1PA2 LINE L1 974 6155 0 1513 199 91 35 chr3 141275034 141275461 -76761697 + L1ME1 LINE L1 5437 5887 -279 1424 132 4 9 chr3 141275592 141275820 -76761338 + AluSg/x SINE Alu 85 311 -1 1820 148 4 0 chr3 141276298 141276576 -76760582 + AluJo SINE Alu 11 289 -23 279 267 105 9 chr3 141276602 141276707 -76760451 - MIR SINE MIR -71 191 77 261 232 0 18 chr3 141276786 141276802 -76760356 + MER3 DNA MER1_type 34 48 -161 731 165 200 6 chr3 141276802 141276972 -76760186 - MER3 DNA MER1_type -1 208 6 458 271 122 63 chr3 141277249 141277552 -76759606 - L2 LINE L2 -5 3308 2988 1897 148 45 6 chr3 141280495 141280826 -76756332 - MER2 DNA MER2_type 0 344 1 258 323 31 21 chr3 141281336 141281432 -76755726 + MIR3 SINE MIR 15 111 -97 22 35 0 0 chr3 141281884 141281913 -76755245 + AT_rich Low_complexity Low_complexity 1 29 0 2197 73 49 0 chr3 141282408 141282694 -76754464 + AluSc SINE Alu 1 300 -9 622 230 88 14 chr3 141282852 141283000 -76754158 + MIR SINE MIR 17 175 -87 428 286 48 20 chr3 141284350 141284497 -76752661 - L2 LINE L2 0 3313 3163 266 192 117 75 chr3 141284470 141284590 -76752568 - L2 LINE L2 -357 2956 2832 * 1128 207 105 7 chr3 141284684 141284969 -76752189 + MLT1D LTR MaLR 1 313 -192 1603 239 207 47 chr3 141285075 141285757 -76751401 - L2 LINE L2 -655 2659 1869 326 295 102 24 chr3 141285823 141285989 -76751169 - MIR SINE MIR 0 262 84 1264 140 121 15 chr3 141287283 141287555 -76749603 + L1MA7 LINE L1 5990 6290 -1 723 231 20 41 chr3 141287566 141287761 -76749397 + L1ME LINE L1 5621 5811 -355 342 235 160 8 chr3 141287872 141287991 -76749167 - MIR SINE MIR -37 225 89 5332 194 157 49 chr3 141288709 141289163 -76747995 - L1MD3 LINE L1 -21 7974 7570 1709 159 80 15 chr3 141289163 141289502 -76747656 - MER46B DNA MER2_type 0 236 1 5332 194 157 49 chr3 141289502 141290708 -76746450 - L1MD3 LINE L1 -425 7570 6135 430 227 0 0 chr3 141290710 141290807 -76746351 - L1ME1 LINE L1 -294 5872 5776 568 225 134 0 chr3 141290928 141291070 -76746088 - MER58C DNA MER1_type 0 215 55 195 42 0 0 chr3 141291675 141291699 -76745459 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 216 377 0 0 chr3 141291913 141291974 -76745184 + L2 LINE L2 3104 3164 -108 207 0 0 0 chr3 141292482 141292505 -76744653 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1468 113 39 31 chr3 141293042 141293271 -76743887 - AluJb SINE Alu -9 303 73 364 287 76 19 chr3 141293402 141293559 -76743599 + MIR SINE MIR 53 218 -44 300 215 254 17 chr3 141293822 141293999 -76743159 - L1ME4a LINE L1 -11 6110 5892 2339 104 0 3 chr3 141294015 141294322 -76742836 - AluY SINE Alu -5 306 1 2313 179 48 28 chr3 141294336 141294839 -76742319 - L1MB7 LINE L1 -7 6177 5665 10640 209 62 22 chr3 141294990 141297489 -76739669 - L1MB7 LINE L1 -18 6664 4266 2099 208 70 30 chr3 141297489 141298018 -76739140 + MER44D DNA MER2_type 1 605 0 10640 209 62 22 chr3 141298018 141299211 -76737947 - L1MB7 LINE L1 -2416 4266 2821 2146 105 7 13 chr3 141299211 141299515 -76737643 - AluSx SINE Alu -4 308 7 10640 209 62 22 chr3 141299515 141299674 -76737484 - L1MB7 LINE L1 -3861 2821 2670 3237 234 74 21 chr3 141299685 141300819 -76736339 - L1MB7 LINE L1 -4188 2458 1168 3981 231 82 18 chr3 141300822 141301856 -76735302 - L1MB7 LINE L1 -5427 1115 16 277 236 24 59 chr3 141301903 141302137 -76735021 - L1ME LINE L1 -370 5751 5519 2119 106 10 3 chr3 141303378 141303671 -76733487 + AluSx SINE Alu 1 295 -17 446 298 15 45 chr3 141303689 141303887 -76733271 + L1ME2 LINE L1 5963 6154 -10 1580 161 22 39 chr3 141304000 141304311 -76732847 + AluJo SINE Alu 1 306 -6 1665 239 96 27 chr3 141305164 141305971 -76731187 + L2 LINE L2 2456 3313 0 2103 138 0 0 chr3 141307084 141307408 -76729750 - AluSx SINE Alu 0 312 1 2152 137 11 6 chr3 141308445 141308809 -76728349 - MER47A DNA MER2_type 0 366 1 302 236 243 7 chr3 141309723 141309863 -76727295 - L1ME LINE L1 -2379 5429 5257 21 0 0 0 chr3 141310480 141310501 -76726657 + AT_rich Low_complexity Low_complexity 1 21 0 329 242 236 39 chr3 141311335 141311513 -76725645 + MIR SINE MIR 33 245 -17 2124 135 34 0 chr3 141311965 141312314 -76724844 + L1MB7 LINE L1 5808 6168 -16 806 259 91 87 chr3 141312354 141313092 -76724066 + L1M4 LINE L1 3670 4410 -1736 369 211 0 90 chr3 141313097 141313253 -76723905 + L1M4 LINE L1 4566 4707 -1439 967 243 233 44 chr3 141313404 141313488 -76723670 + L1MEc LINE L1 35 102 -6294 303 71 0 0 chr3 141313488 141313530 -76723628 + (CA)n Simple_repeat Simple_repeat 2 43 0 967 243 233 44 chr3 141313530 141314084 -76723074 + L1MEc LINE L1 102 794 -5602 2205 95 16 7 chr3 141314665 141314969 -76722189 + AluSp SINE Alu 2 308 -5 562 330 46 12 chr3 141315199 141315372 -76721786 + MIR SINE MIR 6 184 -78 2092 130 0 3 chr3 141315950 141316249 -76720909 - AluSg SINE Alu -12 298 1 281 167 62 0 chr3 141316684 141316732 -76720426 - Alu SINE Alu -251 51 1 6359 75 18 12 chr3 141316782 141317399 -76719759 - L1PA8A LINE L1 -27 6104 5476 2261 103 7 0 chr3 141317399 141317701 -76719457 - AluSx SINE Alu -8 304 1 6359 75 18 12 chr3 141317701 141318092 -76719066 - L1PA8A LINE L1 -655 5476 5089 1587 171 6 32 chr3 141322567 141322883 -76714275 + AluSg SINE Alu 3 310 0 21 0 0 0 chr3 141322883 141322904 -76714254 + AT_rich Low_complexity Low_complexity 1 21 0 192 231 0 0 chr3 141323030 141323082 -76714076 + (CA)n Simple_repeat Simple_repeat 1 52 0 826 223 103 38 chr3 141323507 141323826 -76713332 + HAL1 LINE L1 1353 1692 -815 276 232 0 0 chr3 141324206 141324275 -76712883 + HAL1 LINE L1 2078 2146 -361 402 250 13 51 chr3 141324592 141324748 -76712410 + HAL1 LINE L1 2245 2394 -113 605 314 83 63 chr3 141324870 141325641 -76711517 + L1ME4a LINE L1 4590 5399 -747 400 258 89 59 chr3 141325755 141326092 -76711066 + L1ME4a LINE L1 5537 5883 -238 700 256 123 0 chr3 141326116 141326335 -76710823 - MIR SINE MIR 0 262 17 269 239 109 0 chr3 141326393 141326485 -76710673 + L1ME4a LINE L1 5980 6081 -40 41 0 0 0 chr3 141326516 141326557 -76710601 + AT_rich Low_complexity Low_complexity 1 41 0 2204 70 3 13 chr3 141327015 141327313 -76709845 - AluY SINE Alu -16 295 1 241 299 75 8 chr3 141327949 141328083 -76709075 - L1ME LINE L1 -225 5896 5754 252 143 0 0 chr3 141328478 141328520 -76708638 + (A)n Simple_repeat Simple_repeat 1 42 0 303 333 111 58 chr3 141328961 141329168 -76707990 + L2 LINE L2 3050 3267 -5 27 0 0 0 chr3 141330448 141330475 -76706683 + AT_rich Low_complexity Low_complexity 1 27 0 299 274 162 26 chr3 141330606 141330723 -76706435 + MIR SINE MIR 16 148 -60 711 183 56 0 chr3 141331638 141331764 -76705394 + AluJb SINE Alu 131 263 -49 323 264 11 11 chr3 141331930 141332017 -76705141 + MIR SINE MIR 91 177 -85 203 167 42 21 chr3 141332240 141332288 -76704870 + (ATTTG)n Simple_repeat Simple_repeat 1 49 0 23 33 0 0 chr3 141332667 141332697 -76704461 + AT_rich Low_complexity Low_complexity 1 30 0 1958 130 0 50 chr3 141336176 141336504 -76700654 + AluSx SINE Alu 1 313 0 443 280 32 0 chr3 141336654 141336779 -76700379 - L2 LINE L2 -55 3258 3130 867 249 40 88 chr3 141336951 141337210 -76699948 + L2 LINE L2 2926 3161 -152 1803 169 49 3 chr3 141337210 141337276 -76699882 - MER47A DNA MER2_type -1957 366 304 2202 123 0 0 chr3 141337276 141337577 -76699581 + AluSx SINE Alu 10 310 -2 1803 169 49 3 chr3 141337577 141337859 -76699299 - MER47A DNA MER2_type -2019 304 2 867 249 40 88 chr3 141337859 141337996 -76699162 + L2 LINE L2 3161 3303 -10 833 153 33 20 chr3 141338110 141338260 -76698898 + Tigger5 DNA MER2_type 2169 2320 -3 273 193 0 0 chr3 141338320 141338377 -76698781 + L1M4 LINE L1 2627 2683 -3463 1770 222 94 80 chr3 141338389 141338950 -76698208 + L1MC4 LINE L1 6695 7246 -796 2322 61 0 0 chr3 141338950 141339259 -76697899 - AluY SINE Alu 0 315 7 1937 154 3 3 chr3 141339264 141339556 -76697602 - AluJb SINE Alu -15 297 6 1770 222 94 80 chr3 141339556 141339825 -76697333 + L1MC4 LINE L1 7249 7544 -498 575 234 92 0 chr3 141339852 141340036 -76697122 + L1MD3 LINE L1 7784 7984 -11 956 247 65 63 chr3 141340070 141340344 -76696814 + L1MC4 LINE L1 7551 7828 -214 1931 128 33 10 chr3 141340344 141340649 -76696509 + AluSx SINE Alu 1 312 0 956 247 65 63 chr3 141340649 141340848 -76696310 + L1MC4 LINE L1 7828 8025 -17 1684 172 59 14 chr3 141340986 141341341 -76695817 + MLT1B LTR MaLR 20 390 0 757 231 141 29 chr3 141341461 141341738 -76695420 + L2 LINE L2 3005 3312 -1 829 181 122 16 chr3 141341795 141341983 -76695175 - MER6B DNA MER2_type -2 208 1 641 285 71 81 chr3 141342928 141343018 -76694140 + L2 LINE L2 2201 2290 -1024 1201 239 33 40 chr3 141343018 141343319 -76693839 + AluJo SINE Alu 1 299 -3 641 285 71 81 chr3 141343319 141343733 -76693425 + L2 LINE L2 2290 2700 -614 311 328 109 44 chr3 141343753 141343936 -76693222 + L2 LINE L2 2866 3060 -212 203 276 46 35 chr3 141345490 141345577 -76691581 - L2 LINE L2 -15 3298 3211 2215 81 10 16 chr3 141345631 141345939 -76691219 + AluSg SINE Alu 1 306 -4 1801 88 4 34 chr3 141347119 141347243 -76689915 - AluSc SINE Alu -55 254 128 2245 31 59 21 chr3 141347243 141347533 -76689625 - AluY SINE Alu -10 301 1 1801 88 4 34 chr3 141347533 141347670 -76689488 - AluSc SINE Alu -181 128 1 3527 163 72 23 chr3 141347676 141348540 -76688618 - L1MB8 LINE L1 -115 6063 5155 238 262 64 116 chr3 141348540 141348807 -76688351 + L2 LINE L2 2347 2599 -715 324 340 42 11 chr3 141348933 141349124 -76688034 - L1MB8 LINE L1 -1177 4969 4773 692 337 44 70 chr3 141349169 141349772 -76687386 + L2 LINE L2 2686 3272 0 200 173 12 49 chr3 141350105 141350186 -76686972 + CT-rich Low_complexity Low_complexity 3 80 0 401 316 110 18 chr3 141350560 141350788 -76686370 + MLT1J2 LTR MaLR 202 450 0 955 267 47 19 chr3 141350971 141351330 -76685828 + L1MC4 LINE L1 7107 7475 -567 2048 142 10 6 chr3 141351351 141351662 -76685496 - AluSx SINE Alu 0 312 1 505 255 144 33 chr3 141351675 141351704 -76685454 + L1MC4 LINE L1 7311 7335 -707 1052 203 75 0 chr3 141351704 141351923 -76685235 + MER33 DNA MER1_type 4 252 -2333 2164 87 45 0 chr3 141351923 141352212 -76684946 - AluY SINE Alu -9 302 1 1052 203 75 0 chr3 141352212 141352287 -76684871 + MER33 DNA MER1_type 252 320 -4 505 255 144 33 chr3 141352287 141352577 -76684581 + L1MC4 LINE L1 7335 7748 -294 300 355 22 35 chr3 141352907 141353135 -76684023 - L2 LINE L2 -213 3059 2835 21 0 0 0 chr3 141353264 141353285 -76683873 + AT_rich Low_complexity Low_complexity 1 21 0 2167 123 0 0 chr3 141353345 141353656 -76683502 + AluSx SINE Alu 1 311 0 1837 168 3 13 chr3 141353876 141354191 -76682967 - AluJb SINE Alu 0 312 1 405 337 49 0 chr3 141354319 141354482 -76682676 + L2 LINE L2 2155 2325 -989 2087 124 0 0 chr3 141354502 141354784 -76682374 - AluSx SINE Alu -30 282 1 230 315 33 22 chr3 141354887 141354979 -76682179 - MIR SINE MIR -62 146 54 1350 137 232 0 chr3 141354986 141355270 -76681888 - Tigger3(Golem) DNA MER2_type -873 2156 10 284 288 174 32 chr3 141355406 141355499 -76681659 + MLT1L LTR MaLR 348 426 -189 2241 100 10 3 chr3 141355499 141355809 -76681349 + AluSp SINE Alu 1 312 -1 284 288 174 32 chr3 141355809 141355934 -76681224 + MLT1L LTR MaLR 426 597 -18 22 70 0 0 chr3 141356477 141356520 -76680638 + AT_rich Low_complexity Low_complexity 1 43 0 1180 236 182 40 chr3 141356551 141357088 -76680070 - MLT1G3 LTR MaLR 0 530 27 183 131 16 33 chr3 141357090 141357151 -76680007 + (TA)n Simple_repeat Simple_repeat 2 61 0 620 137 26 43 chr3 141357252 141357369 -76679789 + MER20 DNA MER1_type 44 158 -61 795 102 0 0 chr3 141357370 141357507 -76679651 + (CA)n Simple_repeat Simple_repeat 2 138 0 2030 124 6 16 chr3 141358582 141358896 -76678262 + AluSx SINE Alu 1 311 -1 480 293 126 18 chr3 141359589 141359811 -76677347 + MIR SINE MIR 3 248 -14 23 0 0 0 chr3 141359851 141359874 -76677284 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr3 141360505 141360536 -76676622 + AT_rich Low_complexity Low_complexity 1 31 0 15573 151 29 4 chr3 141361049 141363536 -76673622 + L1MA3 LINE L1 27 2576 -4989 2289 81 0 0 chr3 141364546 141364830 -76672328 - AluSc SINE Alu -25 284 1 888 209 0 11 chr3 141364938 141365115 -76672043 - FAM SINE Alu -5 44 1 459 198 50 0 chr3 141365171 141365272 -76671886 - L1ME2 LINE L1 -9 6155 6050 474 156 98 122 chr3 141365407 141365612 -76671546 + LTR37A LTR ERV1 225 424 -2 1376 118 5 5 chr3 141365709 141365904 -76671254 - AluSg/x SINE Alu -15 297 103 1356 180 39 105 chr3 141366060 141366499 -76670659 - L1ME3 LINE L1 -1 6161 5752 1508 209 108 30 chr3 141366502 141366973 -76670185 + MER110A LTR ERV1 1 484 -7 616 178 38 9 chr3 141366982 141367146 -76670012 - L1ME3 LINE L1 -412 5750 5581 14983 156 29 12 chr3 141367296 141367487 -76669671 + L1MA3 LINE L1 2603 2789 -4935 2319 90 0 3 chr3 141367487 141367786 -76669372 - AluY SINE Alu -13 298 1 14983 156 29 12 chr3 141367786 141369399 -76667759 + L1MA3 LINE L1 2789 4373 -3351 251 337 0 0 chr3 141369399 141369424 -76667734 + AluYb8 SINE Alu 110 134 -174 2125 116 7 3 chr3 141369424 141369727 -76667431 + AluSg SINE Alu 1 304 -6 14983 156 29 12 chr3 141369485 141372936 -76664222 + L1MA3 LINE L1 4373 7724 0 2217 114 0 0 chr3 141373346 141373643 -76663515 + AluSx SINE Alu 1 297 -15 477 0 0 0 chr3 141373643 141373696 -76663462 + (CA)n Simple_repeat Simple_repeat 2 54 0 1777 28 9 5 chr3 141376410 141376623 -76660535 - AluY SINE Alu -5 306 93 234 338 90 68 chr3 141377204 141377438 -76659720 + L2 LINE L2 3034 3272 0 634 277 108 9 chr3 141377664 141377895 -76659263 - MIR SINE MIR 0 262 9 1355 220 39 60 chr3 141378416 141378687 -76658471 + L1MA9 LINE L1 5348 5608 -704 1914 150 14 7 chr3 141378687 141378980 -76658178 + AluSx SINE Alu 1 295 -17 1355 220 39 60 chr3 141378980 141379122 -76658036 + L1MA9 LINE L1 5608 5752 -560 * 5295 156 31 10 chr3 141379113 141380775 -76656383 + L1MA5 LINE L1 4551 6246 -54 22 56 0 0 chr3 141380780 141380816 -76656342 + AT_rich Low_complexity Low_complexity 1 36 0 2147 215 8 34 chr3 141380822 141381355 -76655803 + L1MA9 LINE L1 5762 6274 -38 313 285 108 13 chr3 141381400 141381558 -76655600 + L1ME LINE L1 5597 5769 -401 1784 154 21 0 chr3 141381606 141381886 -76655272 + AluJb SINE Alu 1 286 -26 21 57 0 0 chr3 141382265 141382300 -76654858 + AT_rich Low_complexity Low_complexity 1 35 0 1700 200 49 94 chr3 141382802 141383501 -76653657 + L1MC5 LINE L1 6859 7525 -436 21 43 0 22 chr3 141383804 141383831 -76653327 + AT_rich Low_complexity Low_complexity 1 28 -17 2107 91 33 0 chr3 141383831 141384105 -76653053 + AluSg SINE Alu 1 283 -27 21 43 0 22 chr3 141384105 141384123 -76653035 + AT_rich Low_complexity Low_complexity 28 45 0 236 81 27 0 chr3 141384898 141384935 -76652223 + L1M LINE L1 5375 5412 -762 5866 16 10 0 chr3 141434935 141435607 -76601551 + L1PA2 LINE L1 5474 6152 -3 327 320 27 14 chr3 141435626 141435773 -76601385 - L3 LINE CR1 -824 753 605 463 299 66 62 chr3 141436145 141436386 -76600772 + MIR SINE MIR 3 244 -18 686 65 28 28 chr3 141436695 141436803 -76600355 - HY1 scRNA scRNA -4 108 1 2256 119 3 0 chr3 141437441 141437744 -76599414 - AluSq SINE Alu -9 304 1 216 383 130 6 chr3 141437842 141438004 -76599154 - L2 LINE L2 0 3272 3091 2146 122 0 31 chr3 141438474 141438794 -76598364 + AluSx SINE Alu 1 310 -2 23 0 0 0 chr3 141438873 141438896 -76598262 + AT_rich Low_complexity Low_complexity 1 23 0 1704 130 80 26 chr3 141439334 141439673 -76597485 + MER47A DNA MER2_type 7 363 -3 1548 161 84 9 chr3 141440010 141440345 -76596813 - L1MB1 LINE L1 -4 6164 5805 2390 39 0 4 chr3 141441060 141441365 -76595793 + AluY SINE Alu 1 304 0 2128 128 26 0 chr3 141441565 141441869 -76595289 - AluSq SINE Alu -1 312 1 11328 191 39 25 chr3 141441875 141443421 -76593737 - L1MB1 LINE L1 -346 5822 4300 2270 122 0 0 chr3 141443421 141443732 -76593426 - AluSx SINE Alu -1 311 1 11328 191 39 25 chr3 141443732 141445570 -76591588 - L1MB1 LINE L1 -1868 4300 2385 2269 112 0 3 chr3 141445570 141445875 -76591283 - AluSx SINE Alu -5 307 4 11328 191 39 25 chr3 141445875 141445887 -76591271 - L1MB1 LINE L1 -3783 2385 2375 5369 144 30 36 chr3 141445880 141446559 -76590599 - L1 LINE L1 -3233 4332 3650 * 2485 90 0 0 chr3 141446559 141446871 -76590287 - AluSq SINE Alu -1 312 1 5369 144 30 36 chr3 141446871 141447493 -76589665 - L1 LINE L1 -3915 3650 3044 531 95 24 0 chr3 141447493 141447577 -76589581 - L1PA14 LINE L1 -5 6156 6071 5369 144 30 36 chr3 141447577 141447973 -76589185 - L1 LINE L1 -4521 3044 2647 27 29 0 0 chr3 141448321 141448355 -76588803 + AT_rich Low_complexity Low_complexity 1 34 0 2137 120 0 3 chr3 141448576 141448867 -76588291 - AluSx SINE Alu -21 291 2 4884 180 18 23 chr3 141448871 141449821 -76587337 - L1 LINE L1 -2142 4004 3059 1630 184 30 16 chr3 141449821 141450125 -76587033 - AluSx SINE Alu -4 308 1 4884 180 18 23 chr3 141450125 141450287 -76586871 - L1 LINE L1 -3087 3059 2898 998 231 53 0 chr3 141450311 141450593 -76586565 - AluSx SINE Alu -2 300 4 385 233 68 45 chr3 141450771 141450904 -76586254 + L1ME3A LINE L1 6024 6159 -11 404 275 53 8 chr3 141450913 141451044 -76586114 - LTR67 LTR ERVL -72 485 349 2463 69 7 0 chr3 141451248 141451552 -76585606 + AluY SINE Alu 1 306 -5 231 253 35 46 chr3 141451609 141451696 -76585462 - MIR SINE MIR -13 249 164 2248 225 100 60 chr3 141451711 141452472 -76584686 + L1MEc LINE L1 377 1193 -5203 2286 119 0 3 chr3 141452472 141452783 -76584375 + AluSx SINE Alu 2 311 -1 2248 225 100 60 chr3 141452783 141453060 -76584098 + L1MEc LINE L1 1193 1457 -4939 219 300 73 36 chr3 141453384 141453494 -76583664 - L2 LINE L2 -934 2380 2267 772 231 278 33 chr3 141453649 141454073 -76583085 - LTR50 LTR ERVL -267 528 1 193 211 0 0 chr3 141454927 141454965 -76582193 - MIR3 SINE MIR -2 206 169 2124 107 3 23 chr3 141455625 141455948 -76581210 - AluSx SINE Alu 0 317 1 344 356 8 0 chr3 141456330 141456448 -76580710 + MIR SINE MIR 9 127 -135 30 59 0 0 chr3 141456519 141456570 -76580588 + AT_rich Low_complexity Low_complexity 1 51 0 502 155 0 10 chr3 141456861 141456958 -76580200 + MLT1B LTR MaLR 1 96 -294 1227 141 0 0 chr3 141456968 141457160 -76579998 + MLT1B LTR MaLR 199 390 0 260 205 77 103 chr3 141457218 141457273 -76579885 + L1M4 LINE L1 4906 4961 -1185 2314 78 0 47 chr3 141457273 141457593 -76579565 + AluY SINE Alu 6 310 -1 260 205 77 103 chr3 141457593 141457694 -76579464 + L1M4 LINE L1 4961 5059 -1087 2178 107 0 47 chr3 141457694 141458013 -76579145 + AluSx SINE Alu 1 304 -8 260 205 77 103 chr3 141458013 141458050 -76579108 + L1M4 LINE L1 5059 5095 -1051 396 0 0 0 chr3 141458578 141458622 -76578536 + (CA)n Simple_repeat Simple_repeat 1 44 0 242 313 50 0 chr3 141458756 141458855 -76578303 - L2 LINE L2 -241 3072 2969 713 234 130 0 chr3 141458952 141459183 -76577975 - HAL1 LINE L1 -2106 401 141 472 257 13 53 chr3 141459186 141459338 -76577820 - L2 LINE L2 -49 3264 3119 432 212 15 19 chr3 141459424 141459549 -76577609 + MER5A DNA MER1_type 10 188 -1 967 177 29 6 chr3 141460430 141460605 -76576553 + MER5A DNA MER1_type 1 179 -10 190 268 0 0 chr3 141461405 141461446 -76575712 - L2 LINE L2 -20 3252 3212 2415 92 0 0 chr3 141461791 141462094 -76575064 - AluSg SINE Alu -7 303 1 189 0 0 0 chr3 141462270 141462291 -76574867 + (A)n Simple_repeat Simple_repeat 1 21 0 2324 111 0 3 chr3 141462667 141462973 -76574185 - AluSx SINE Alu -7 305 1 415 246 232 24 chr3 141463069 141463280 -76573878 + MIR SINE MIR 8 262 0 181 344 86 39 chr3 141467377 141467505 -76569653 - MIR SINE MIR -115 147 14 1035 221 123 39 chr3 141467566 141468006 -76569152 + MER113 DNA MER1_type? 2 478 -43 985 269 150 21 chr3 141469351 141469830 -76567328 + L2 LINE L2 2164 2704 -610 212 312 54 21 chr3 141469853 141469946 -76567212 + L2 LINE L2 3172 3267 -5 385 321 61 0 chr3 141470086 141470217 -76566941 - MIR3 SINE MIR -42 166 28 928 78 78 0 chr3 141471435 141471563 -76565595 - MER85 DNA T2_type -1 138 1 466 298 65 36 chr3 141471888 141472163 -76564995 + L2 LINE L2 2371 2653 -661 2076 156 34 36 chr3 141472324 141472881 -76564277 - MLT2A2 LTR ERVL 0 554 1 379 361 172 11 chr3 141472881 141473241 -76563917 + L2 LINE L2 2855 3272 0 450 282 189 19 chr3 141473428 141473687 -76563471 + L3 LINE CR1 1264 1566 -11 542 244 59 52 chr3 141474433 141474704 -76562454 - MER69 DNA AcHobo -115 2411 2139 633 310 56 28 chr3 141475054 141475267 -76561891 - MIR SINE MIR -16 246 28 235 161 16 16 chr3 141475307 141475369 -76561789 + CT-rich Low_complexity Low_complexity 3 64 0 283 244 0 13 chr3 141475475 141475553 -76561605 - MER69 DNA AcHobo -1 2525 2449 2115 121 4 0 chr3 141475574 141475854 -76561304 + AluSx SINE Alu 6 286 -26 1851 152 122 68 chr3 141475885 141476313 -76560845 - MLT2B2 LTR ERVL -64 451 1 596 244 58 18 chr3 141476313 141476535 -76560623 - MER69 DNA AcHobo -74 2452 2222 2250 80 0 33 chr3 141476565 141476864 -76560294 - AluY SINE Alu -22 289 1 460 43 0 29 chr3 141476870 141476939 -76560219 + (TTTA)n Simple_repeat Simple_repeat 2 68 0 806 148 0 8 chr3 141476939 141477062 -76560096 - AluSq/x SINE Alu -191 122 1 302 167 156 21 chr3 141477062 141477158 -76560000 - MER69 DNA AcHobo -300 2226 2118 * 1735 236 123 18 chr3 141477154 141477658 -76559500 - MER69 DNA AcHobo -669 557 1 2714 85 6 0 chr3 141478173 141478526 -76558632 + THE1A LTR MaLR 1 355 0 11684 87 15 1 chr3 141478526 141480084 -76557074 + THE1A-int LTR MaLR 1 1580 0 2579 97 8 0 chr3 141480084 141480436 -76556722 + THE1A LTR MaLR 1 355 0 12923 137 60 13 chr3 141481391 141481880 -76555278 + Tigger1 DNA MER2_type 5 469 -1949 8467 26 18 269 chr3 141481880 141483711 -76553447 + SVA Other Other 16 1386 0 12923 137 60 13 chr3 141483711 141485526 -76551632 + Tigger1 DNA MER2_type 469 2418 0 910 144 132 0 chr3 141485608 141485775 -76551383 - MER5A DNA MER1_type 0 189 1 2101 119 3 3 chr3 141485994 141486296 -76550862 + AluSq SINE Alu 1 302 -11 2310 112 0 0 chr3 141486831 141487136 -76550022 - AluSg SINE Alu -5 305 1 195 300 56 72 chr3 141487522 141487691 -76549467 + MIR SINE MIR 38 206 -56 2402 100 0 0 chr3 141488083 141488393 -76548765 + AluSg SINE Alu 1 310 0 21 0 0 0 chr3 141488484 141488505 -76548653 + AT_rich Low_complexity Low_complexity 1 21 0 392 281 168 5 chr3 141488809 141488994 -76548164 - MLT1L LTR MaLR -2 613 399 247 259 94 59 chr3 141489015 141489185 -76547973 + MER5A DNA MER1_type 12 187 -2 * 654 240 45 7 chr3 141489039 141489193 -76547965 - MER5A DNA MER1_type -23 166 7 5521 155 28 23 chr3 141489237 141491369 -76545789 - L1MA5 LINE L1 0 7002 4846 3048 182 36 25 chr3 141491366 141491575 -76545583 - L1MA5 LINE L1 -3787 3061 2856 * 7319 47 1 0 chr3 141491575 141492548 -76544610 + L1PA5 LINE L1 5175 6148 -6 3048 182 36 25 chr3 141492548 141493216 -76543942 - L1MA5 LINE L1 -3992 2856 2174 357 121 15 0 chr3 141493218 141493284 -76543874 - L1MA5A LINE L1 -124 6173 6107 * 2277 219 43 38 chr3 141493253 141493324 -76543834 - L1MA5 LINE L1 -4868 1981 1912 1897 125 10 44 chr3 141493324 141493620 -76543538 - AluSg SINE Alu -24 286 1 2277 219 43 38 chr3 141493620 141494287 -76542871 - L1MA5 LINE L1 -4937 1912 1239 282 160 0 0 chr3 141495588 141495638 -76541520 + CT-rich Low_complexity Low_complexity 3 52 0 1027 199 0 0 chr3 141495641 141495822 -76541336 - AluJb SINE Alu -41 271 91 19501 161 25 28 chr3 141495831 141496452 -76540706 - L1 LINE L1 -1514 6051 5430 2022 130 36 17 chr3 141496452 141496753 -76540405 - AluSx SINE Alu -4 308 2 19501 161 25 28 chr3 141496753 141497706 -76539452 - L1 LINE L1 -2135 5430 4476 1635 182 30 17 chr3 141497706 141498008 -76539150 - AluSx SINE Alu -6 306 1 19501 161 25 28 chr3 141498008 141498184 -76538974 - L1 LINE L1 -3089 4476 4301 2163 111 10 0 chr3 141498184 141498490 -76538668 - AluSx SINE Alu 0 312 4 19501 161 25 28 chr3 141498490 141499174 -76537984 - L1 LINE L1 -3264 4301 3617 2485 90 0 0 chr3 141499174 141499486 -76537672 - AluSq SINE Alu -1 312 1 19501 161 25 28 chr3 141499486 141500104 -76537054 - L1 LINE L1 -3948 3617 2999 531 95 24 0 chr3 141500104 141500188 -76536970 - L1PA14 LINE L1 -5 6156 6071 19501 161 25 28 chr3 141500188 141503182 -76533976 - L1 LINE L1 -4566 2999 20 2498 135 41 2 chr3 141503185 141503609 -76533549 - MER6A DNA MER2_type -539 66 -2 1817 181 0 0 chr3 141503887 141504179 -76532979 - AluJo SINE Alu -5 307 16 769 196 28 7 chr3 141505178 141505321 -76531837 + FRAM SINE Alu 1 146 -30 259 198 0 52 chr3 141506006 141506102 -76531056 + (TATATG)n Simple_repeat Simple_repeat 2 92 0 446 244 11 0 chr3 141506102 141506192 -76530966 + MER2 DNA MER2_type 2 92 -253 215 100 0 25 chr3 141508399 141508439 -76528719 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 25 31 0 0 chr3 141508513 141508545 -76528613 + GC_rich Low_complexity Low_complexity 1 32 0 472 262 64 59 chr3 141510874 141511061 -76526097 + MIR SINE MIR 5 192 -70 660 255 184 14 chr3 141511096 141511308 -76525850 + MIR SINE MIR 11 258 -4 262 257 176 91 chr3 141511540 141511727 -76525431 + MIR SINE MIR 36 238 -24 2533 143 38 5 chr3 141513434 141513854 -76523304 - Tigger2a DNA MER2_type 0 434 1 1624 210 3 16 chr3 141514305 141514610 -76522548 - AluJo SINE Alu -11 301 1 281 298 159 48 chr3 141516025 141516083 -76521075 + MIR SINE MIR 26 76 -186 889 199 26 62 chr3 141516083 141516309 -76520849 + MER20 DNA MER1_type 2 219 0 281 298 159 48 chr3 141516309 141516458 -76520700 + MIR SINE MIR 76 256 -6 216 0 0 0 chr3 141516533 141516557 -76520601 + (T)n Simple_repeat Simple_repeat 1 24 0 227 245 0 20 chr3 141517838 141517887 -76519271 + polypyrimidine Low_complexity Low_complexity 1 48 0 323 76 76 38 chr3 141517888 141517967 -76519191 + CT-rich Low_complexity Low_complexity 1 82 0 3598 187 144 120 chr3 141518339 141519929 -76517229 - L1MC4a LINE L1 -7 7801 6174 1926 239 149 27 chr3 141520310 141521010 -76516148 - L1MB2 LINE L1 -1 6170 5386 315 183 17 0 chr3 141521013 141521073 -76516085 + L1 LINE L1 4927 4987 -1159 290 269 0 42 chr3 141521072 141521191 -76515967 - L1MB2 LINE L1 -1317 4829 4716 * 2659 157 50 128 chr3 141521188 141521309 -76515849 - L1M4 LINE L1 -762 5384 5255 213 39 0 0 chr3 141521309 141521335 -76515823 + (CA)n Simple_repeat Simple_repeat 2 27 0 2659 157 50 128 chr3 141521335 141522085 -76515073 - L1M4 LINE L1 -891 5255 4581 370 263 126 31 chr3 141522175 141522803 -76514355 + L1ME4a LINE L1 5337 6027 -94 213 287 181 0 chr3 141523556 141523650 -76513508 - L3 LINE CR1 -238 1339 1229 464 331 102 55 chr3 141523701 141524064 -76513094 - L3 LINE CR1 -357 1220 841 27 0 0 0 chr3 141524077 141524104 -76513054 + AT_rich Low_complexity Low_complexity 1 27 0 743 160 0 30 chr3 141524104 141524235 -76512923 - FLAM_C SINE Alu -16 127 1 12182 29 0 1 chr3 141524359 141525829 -76511329 - L1PA2 LINE L1 -1676 4470 3002 7720 15 8 0 chr3 141525829 141527486 -76509672 + L1PA2 LINE L1 4489 6152 -3 326 320 27 14 chr3 141527505 141527652 -76509506 - L3 LINE CR1 -824 753 605 470 299 66 62 chr3 141528024 141528265 -76508893 + MIR SINE MIR 3 244 -18 685 65 28 28 chr3 141528574 141528682 -76508476 - HY1 scRNA scRNA -4 108 1 289 254 155 0 chr3 141528803 141528874 -76508284 - FLAM_A SINE Alu -18 115 34 2230 119 3 0 chr3 141529320 141529623 -76507535 - AluSq SINE Alu -9 304 1 212 383 130 6 chr3 141529721 141529883 -76507275 - L2 LINE L2 0 3272 3091 2117 122 0 31 chr3 141530353 141530673 -76506485 + AluSx SINE Alu 1 310 -2 23 0 0 0 chr3 141530752 141530775 -76506383 + AT_rich Low_complexity Low_complexity 1 23 0 1812 130 80 26 chr3 141531213 141531552 -76505606 + MER47A DNA MER2_type 7 363 -3 1656 161 84 9 chr3 141531889 141532224 -76504934 - L1MB1 LINE L1 -4 6880 6521 2407 39 0 4 chr3 141532939 141533244 -76503914 + AluY SINE Alu 1 304 0 2116 125 26 0 chr3 141533444 141533748 -76503410 - AluSq SINE Alu -1 312 1 13293 165 41 23 chr3 141533754 141535300 -76501858 - L1MB1 LINE L1 -346 6538 5021 2216 129 0 0 chr3 141535300 141535611 -76501547 - AluSx SINE Alu -1 311 1 13293 165 41 23 chr3 141535611 141537449 -76499709 - L1MB1 LINE L1 -1863 5021 3217 2024 128 30 3 chr3 141537449 141537746 -76499412 - AluSg SINE Alu -5 305 1 13293 165 41 23 chr3 141537746 141537815 -76499343 - L1MB1 LINE L1 -3667 3217 3151 1930 151 10 0 chr3 141537815 141538113 -76499045 + AluSx SINE Alu 1 301 -11 13293 165 41 23 chr3 141538113 141540324 -76496834 - L1MB1 LINE L1 -3733 3151 620 1099 153 5 25 chr3 141540304 141540506 -76496652 - L1MB1 LINE L1 -6663 200 3 * 2440 71 0 13 chr3 141541459 141541769 -76495389 - AluY SINE Alu -5 306 1 257 217 208 17 chr3 141542866 141542986 -76494172 - MIR SINE MIR -2 260 118 574 167 59 184 chr3 141544819 141545058 -76492100 + MER3 DNA MER1_type 1 209 0 305 146 0 18 chr3 141545014 141545069 -76492089 - MER3 DNA MER1_type -119 90 37 * 865 200 93 70 chr3 141545909 141546224 -76490934 - L1ME1 LINE L1 0 6184 5858 270 247 215 0 chr3 141546729 141546822 -76490336 + MIR SINE MIR 40 152 -110 185 276 26 86 chr3 141547384 141547500 -76489658 + MIR SINE MIR 154 262 0 354 266 216 30 chr3 141547604 141547803 -76489355 - MIR SINE MIR -2 260 25 595 260 20 14 chr3 141547882 141548028 -76489130 - MER5B DNA MER1_type -24 154 8 194 191 0 24 chr3 141548509 141548551 -76488607 - L3b LINE CR1 -253 1330 1290 1625 198 7 7 chr3 141549055 141549358 -76487800 - AluJo SINE Alu -9 303 1 24 53 0 0 chr3 141549460 141549498 -76487660 + AT_rich Low_complexity Low_complexity 1 38 0 4489 188 109 61 chr3 141549761 141550755 -76486403 + Charlie1a DNA MER1_type 3 1084 -1677 2476 65 0 16 chr3 141550755 141551062 -76486096 + AluY SINE Alu 1 302 -9 4489 188 109 61 chr3 141551062 141551453 -76485705 + Charlie1a DNA MER1_type 1084 1455 0 2360 78 3 7 chr3 141555130 141555438 -76481720 - AluY SINE Alu -4 307 1 372 22 0 0 chr3 141555448 141555493 -76481665 + (TG)n Simple_repeat Simple_repeat 1 45 0 2149 113 3 7 chr3 141557432 141557733 -76479425 - AluSx SINE Alu -12 300 1 1002 216 131 19 chr3 141558548 141558868 -76478290 - MLT1A2 LTR MaLR 0 374 19 1083 231 84 17 chr3 141559000 141559299 -76477859 + MER2 DNA MER2_type 2 320 -25 180 0 0 0 chr3 141559557 141559577 -76477581 + (TTTTTA)n Simple_repeat Simple_repeat 4 23 0 3071 62 5 0 chr3 141559583 141559983 -76477175 - L1PA5 LINE L1 0 6154 5753 198 333 77 0 chr3 141561254 141561332 -76475826 + MIR3 SINE MIR 76 159 -49 306 337 0 0 chr3 141561375 141561467 -76475691 - MER5A DNA MER1_type -84 105 14 1688 175 77 24 chr3 141561485 141561862 -76475296 - L1MB8 LINE L1 -6 6172 5776 2118 225 63 27 chr3 141561864 141562874 -76474284 - L1M4c LINE L1 -3975 2409 1267 5768 149 25 6 chr3 141562885 141563837 -76473321 + Tigger1 DNA MER2_type 24 993 -1425 506 254 118 48 chr3 141565469 141565697 -76471461 + MIR SINE MIR 13 256 -6 598 281 178 42 chr3 141566189 141566548 -76470610 + L2 LINE L2 2903 3310 -3 263 208 78 39 chr3 141566828 141566905 -76470253 + L2 LINE L2 3193 3272 0 375 238 103 32 chr3 141567007 141567133 -76470025 - MER5A DNA MER1_type -22 167 33 267 243 162 9 chr3 141567153 141567264 -76469894 - MER103 DNA DNA -30 136 9 501 47 0 0 chr3 141567287 141567351 -76469807 + (TATG)n Simple_repeat Simple_repeat 2 65 0 27 29 0 0 chr3 141568447 141568481 -76468677 + AT_rich Low_complexity Low_complexity 1 34 0 2101 120 0 3 chr3 141568701 141568993 -76468165 - AluSx SINE Alu -21 291 1 362 266 118 6 chr3 141570114 141570283 -76466875 + MIR SINE MIR 74 261 -1 23 54 0 0 chr3 141570480 141570517 -76466641 + AT_rich Low_complexity Low_complexity 1 37 0 336 266 124 90 chr3 141570641 141570964 -76466194 - L1ME4a LINE L1 -220 5901 5568 1004 47 78 0 chr3 141571240 141571369 -76465789 - MER85 DNA T2_type 0 139 1 24 67 0 0 chr3 141571509 141571554 -76465604 + AT_rich Low_complexity Low_complexity 1 45 0 1826 129 4 22 chr3 141571759 141572037 -76465121 - AluSq SINE Alu -19 294 22 863 203 104 47 chr3 141572419 141572631 -76464527 - MER58A DNA MER1_type 0 224 1 28 0 0 0 chr3 141573162 141573190 -76463968 + AT_rich Low_complexity Low_complexity 1 28 0 215 61 30 0 chr3 141573234 141573267 -76463891 + (TG)n Simple_repeat Simple_repeat 1 34 0 543 287 109 25 chr3 141573777 141574181 -76462977 + HAL1 LINE L1 810 1247 -1260 260 250 0 0 chr3 141574316 141574380 -76462778 + HAL1 LINE L1 1455 1518 -989 6499 187 48 22 chr3 141575422 141576908 -76460250 + Looper DNA T2_type 21 1545 -13 270 81 0 0 chr3 141576921 141576958 -76460200 + (A)n Simple_repeat Simple_repeat 1 37 0 2596 170 33 16 chr3 141577341 141577854 -76459304 - L1MB5 LINE L1 0 6174 5653 499 285 7 29 chr3 141577856 141577993 -76459165 - MIR SINE MIR -121 141 8 825 334 118 15 chr3 141579407 141579952 -76457206 + L2 LINE L2 2419 3011 -261 210 192 154 0 chr3 141580069 141580121 -76457037 + L2 LINE L2 3254 3313 0 755 158 15 15 chr3 141580631 141580764 -76456394 - FLAM_C SINE Alu 0 133 1 1788 102 0 4 chr3 141584240 141584476 -76452682 + AluSx SINE Alu 1 235 -77 599 94 94 0 chr3 141584476 141584572 -76452586 + AluSp/q SINE Alu 188 292 -21 432 0 0 0 chr3 141584574 141584622 -76452536 + (CA)n Simple_repeat Simple_repeat 2 49 0 1483 182 7 7 chr3 141584636 141584905 -76452253 - AluJb SINE Alu -41 271 3 556 306 110 76 chr3 141585849 141586212 -76450946 + HAL1 LINE L1 290 639 -1868 1708 170 43 0 chr3 141586212 141586535 -76450623 - MER1B DNA MER1_type 0 337 1 556 306 110 76 chr3 141586535 141586688 -76450470 + HAL1 LINE L1 639 833 -1674 2800 45 28 0 chr3 141586688 141587047 -76450111 - L1PA3 LINE L1 0 6155 5787 556 306 110 76 chr3 141587047 141587146 -76450012 + HAL1 LINE L1 833 927 -1580 512 251 43 100 chr3 141587203 141587622 -76449536 + HAL1 LINE L1 1100 1494 -1013 545 206 0 10 chr3 141587625 141587727 -76449431 - Tigger7 DNA MER2_type -2 2485 2385 * 1299 191 81 0 chr3 141587722 141587968 -76449190 - Tigger7 DNA MER2_type -2220 267 2 336 190 250 0 chr3 141587994 141588094 -76449064 + HAL1 LINE L1 1510 1634 -873 425 262 80 58 chr3 141588182 141588457 -76448701 + HAL1 LINE L1 1803 2083 -424 348 298 126 34 chr3 141588536 141588798 -76448360 - MLT1I LTR MaLR -123 286 1 491 266 32 37 chr3 141588919 141589107 -76448051 + HAL1 LINE L1 2277 2463 -44 735 115 62 39 chr3 141594464 141594594 -76442564 - FLAM_C SINE Alu 0 133 1 3539 209 64 25 chr3 141595258 141596523 -76440635 - L1ME1 LINE L1 0 6166 4863 496 229 57 114 chr3 141597422 141597521 -76439637 - MIR SINE MIR -23 239 136 3594 146 31 65 chr3 141597521 141598304 -76438854 - L1MC2 LINE L1 -9 6335 5580 496 229 57 114 chr3 141598304 141598431 -76438727 - MIR SINE MIR -126 136 26 195 42 0 0 chr3 141598485 141598509 -76438649 + (TTA)n Simple_repeat Simple_repeat 2 25 0 316 316 66 7 chr3 141598525 141598661 -76438497 - L1ME LINE L1 -439 5682 5539 2800 189 111 81 chr3 141598842 141599567 -76437591 - Ricksha_a DNA DNA -2083 1168 426 2034 109 0 7 chr3 141599567 141599851 -76437307 + AluSx SINE Alu 1 282 -30 2800 189 111 81 chr3 141599851 141600285 -76436873 - Ricksha_a DNA DNA -2825 426 7 509 0 16 0 chr3 141601082 141601143 -76436015 + (TTTAG)n Simple_repeat Simple_repeat 3 64 0 861 200 7 0 chr3 141601145 141601295 -76435863 - AluJ SINE Alu -30 282 132 765 144 0 17 chr3 141601361 141601479 -76435679 - AluJ SINE Alu -190 122 7 1714 166 0 66 chr3 141601496 141601816 -76435342 - AluJo SINE Alu -11 301 3 593 195 9 0 chr3 141602758 141602871 -76434287 + MER51-int LTR ERV1 7699 7812 -4 245 213 88 50 chr3 141603030 141603110 -76434048 + MER51C LTR ERV1 337 419 -221 2255 82 20 0 chr3 141603158 141603462 -76433696 + AluSq SINE Alu 1 310 -3 2323 71 17 3 chr3 141603475 141603771 -76433387 + AluSp SINE Alu 1 300 -13 789 237 71 5 chr3 141603774 141603972 -76433186 + MER51C LTR ERV1 429 639 -1 2526 260 153 66 chr3 141604484 141605508 -76431650 - L2 LINE L2 -212 3101 1872 189 0 0 0 chr3 141605508 141605529 -76431629 + (TGG)n Simple_repeat Simple_repeat 3 23 0 2526 260 153 66 chr3 141605529 141606173 -76430985 - L2 LINE L2 -1441 1872 1286 411 213 277 114 chr3 141606178 141606600 -76430558 - L2 LINE L2 -2615 699 209 234 351 13 0 chr3 141606709 141606786 -76430372 + L3b LINE CR1 1259 1336 -247 1175 206 23 0 chr3 141607660 141607874 -76429284 - MER20 DNA MER1_type 0 219 1 24 32 0 0 chr3 141608704 141608735 -76428423 + AT_rich Low_complexity Low_complexity 1 31 0 219 36 0 0 chr3 141608837 141608865 -76428293 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1744 154 7 10 chr3 141609324 141609623 -76427535 + AluJb SINE Alu 1 298 -14 2106 100 10 16 chr3 141609824 141610135 -76427023 - AluSx SINE Alu -1 311 3 24 0 0 0 chr3 141611381 141611405 -76425753 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 141612228 141612249 -76424909 + AT_rich Low_complexity Low_complexity 1 21 0 406 274 67 7 chr3 141614854 141614989 -76422169 + MIR SINE MIR 38 180 -82 2156 130 0 0 chr3 141615013 141615321 -76421837 + AluSx SINE Alu 1 308 -4 27 0 0 0 chr3 141615880 141615907 -76421251 + AT_rich Low_complexity Low_complexity 1 27 0 1987 144 10 7 chr3 141619303 141619608 -76417550 - AluSx SINE Alu -6 306 1 204 135 0 0 chr3 141620141 141620178 -76416980 + (TG)n Simple_repeat Simple_repeat 1 37 0 2248 119 0 0 chr3 141620302 141620605 -76416553 - AluSx SINE Alu -9 303 1 291 28 0 0 chr3 141620820 141620856 -76416302 + (TG)n Simple_repeat Simple_repeat 2 37 0 1631 157 0 20 chr3 141620904 141621153 -76416005 - AluJb SINE Alu -68 244 1 1786 161 47 0 chr3 141622341 141622639 -76414519 + AluSx SINE Alu 1 312 0 797 227 13 80 chr3 141622639 141622864 -76414294 + MER58A DNA MER1_type 12 221 -3 27 0 0 0 chr3 141623532 141623559 -76413599 + AT_rich Low_complexity Low_complexity 1 27 0 2508 73 0 13 chr3 141624363 141624678 -76412480 - AluY SINE Alu 0 311 1 330 307 93 21 chr3 141625101 141625241 -76411917 - MIR SINE MIR 0 262 113 256 128 0 0 chr3 141625922 141625961 -76411197 - MADE1 DNA Mariner -41 39 1 2289 113 7 0 chr3 141626433 141626742 -76410416 - AluSx SINE Alu 0 312 2 344 244 76 8 chr3 141627464 141627583 -76409575 + MER112 DNA MER1_type 120 246 -14 189 359 31 46 chr3 141628806 141629001 -76408157 + L3 LINE CR1 679 870 -707 335 204 68 0 chr3 141629431 141629519 -76407639 - L2 LINE L2 -56 3257 3164 674 271 161 20 chr3 141629520 141629876 -76407282 + L2 LINE L2 875 3313 0 621 176 210 40 chr3 141631533 141631709 -76405449 + MER3 DNA MER1_type 2 207 -2 2397 95 0 0 chr3 141631875 141632181 -76404977 + AluSg SINE Alu 1 306 -4 227 179 48 107 chr3 141632462 141632546 -76404612 + L2 LINE L2 3235 3313 0 325 259 30 59 chr3 141633164 141633299 -76403859 + MER5A DNA MER1_type 31 161 -28 277 277 58 66 chr3 141633181 141633318 -76403840 - MER5B DNA MER1_type -32 146 11 * 233 254 60 15 chr3 141634719 141634786 -76402372 + MIR SINE MIR 158 227 -35 381 250 192 34 chr3 141635104 141635396 -76401762 + L1ME3A LINE L1 4923 5260 -886 235 214 29 0 chr3 141635401 141635471 -76401687 + L1ME3A LINE L1 5318 5389 -775 467 228 157 68 chr3 141635477 141635859 -76401299 + L1ME3A LINE L1 5729 6144 -26 448 240 55 12 chr3 141635860 141636030 -76401128 + L1MA10 LINE L1 5984 6326 -8 364 149 15 0 chr3 141636472 141636539 -76400619 - L1MB7 LINE L1 -21 6163 6096 1238 159 124 27 chr3 141636544 141636802 -76400356 - AluJo SINE Alu -24 288 6 381 184 61 31 chr3 141636806 141636904 -76400254 - L1MB8 LINE L1 -75 6103 6003 831 135 10 121 chr3 141637050 141637257 -76399901 - MER20 DNA MER1_type -17 202 19 22 35 0 0 chr3 141637532 141637561 -76399597 + AT_rich Low_complexity Low_complexity 1 29 0 312 338 104 7 chr3 141637970 141638124 -76399034 + MIR SINE MIR 32 200 -62 805 178 137 18 chr3 141640220 141640439 -76396719 + MER96B DNA MER1_type? 173 417 0 245 324 14 0 chr3 141641705 141641779 -76395379 - L2 LINE L2 -10 3303 3229 212 284 63 63 chr3 141642102 141642197 -76394961 + MIR3 SINE MIR 109 203 -5 2263 60 44 3 chr3 141642734 141643032 -76394126 - AluY SINE Alu -1 310 1 1953 147 17 0 chr3 141644136 141644429 -76392729 + AluSx SINE Alu 1 298 -14 237 323 81 0 chr3 141645670 141645794 -76391364 + L3b LINE CR1 1104 1237 -346 200 222 22 0 chr3 141645810 141645855 -76391303 + GA-rich Low_complexity Low_complexity 2 47 0 466 262 63 68 chr3 141646075 141646143 -76391015 + Charlie8 DNA MER1_type 27 94 -247 2435 88 0 0 chr3 141646143 141646440 -76390718 - AluSx SINE Alu -15 297 1 466 262 63 68 chr3 141646440 141646623 -76390535 + Charlie8 DNA MER1_type 94 277 -64 263 308 77 31 chr3 141646873 141647003 -76390155 + MIR SINE MIR 112 247 -15 2306 46 43 0 chr3 141648584 141648865 -76388293 - AluY SINE Alu -18 293 1 546 261 118 0 chr3 141650492 141650645 -76386513 - MER5B DNA MER1_type 0 178 8 187 286 71 71 chr3 141650776 141650836 -76386322 - L2 LINE L2 -218 3054 2992 639 210 91 40 chr3 141650836 141651012 -76386146 - MER5A DNA MER1_type 0 189 5 187 286 71 71 chr3 141651012 141651063 -76386095 - L2 LINE L2 -279 2993 2943 379 229 55 0 chr3 141651084 141651193 -76385965 - L1ME4a LINE L1 -213 5908 5794 2183 120 3 0 chr3 141651467 141651759 -76385399 - AluSg SINE Alu -16 294 2 38 22 0 0 chr3 141652302 141652347 -76384811 + AT_rich Low_complexity Low_complexity 1 45 0 538 228 12 42 chr3 141654523 141654690 -76382468 + L1MA10 LINE L1 6173 6334 0 202 260 20 10 chr3 141655685 141655785 -76381373 + (TATG)n Simple_repeat Simple_repeat 2 102 0 12539 169 23 112 chr3 141655989 141659331 -76377827 + L1P LINE L1 12 3055 -3091 8665 136 46 7 chr3 141659393 141660727 -76376431 - L1PBa LINE L1 -3091 3771 2491 1014 46 0 0 chr3 141660727 141660857 -76376301 - L1PA6 LINE L1 0 6154 6025 8665 136 46 7 chr3 141660857 141662962 -76374196 - L1PBa LINE L1 -4371 2491 4 21 0 0 0 chr3 141664796 141664817 -76372341 + AT_rich Low_complexity Low_complexity 1 21 0 1651 163 10 24 chr3 141664892 141665187 -76371971 + AluJo SINE Alu 1 291 -21 423 133 19 133 chr3 141665839 141665944 -76371214 - FLAM_A SINE Alu -18 124 32 813 252 7 82 chr3 141666096 141666513 -76370645 - L1MC4a LINE L1 -1749 6059 5674 481 290 12 0 chr3 141666987 141667149 -76370009 + MER103 DNA DNA 3 166 0 1575 158 92 0 chr3 141668214 141668486 -76368672 + AluJb SINE Alu 1 297 -15 1629 156 0 8 chr3 141668630 141668886 -76368272 + AluJb SINE Alu 13 266 -46 435 38 0 0 chr3 141668894 141668947 -76368211 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 336 204 157 54 chr3 141669452 141669599 -76367559 - L2 LINE L2 -40 3273 3112 1691 191 21 0 chr3 141669599 141669881 -76367277 + AluJo SINE Alu 1 288 -24 7281 21 0 80 chr3 141671040 141672746 -76364412 - L1PA3 LINE L1 -8 6147 4578 186 232 158 21 chr3 141673059 141673154 -76364004 - MIR SINE MIR -64 198 91 553 109 27 27 chr3 141673529 141673639 -76363519 + L1MA10 LINE L1 6221 6330 -4 920 193 0 6 chr3 141674206 141674372 -76362786 - MER45A DNA AcHobo 0 178 14 1191 161 21 29 chr3 141675002 141675245 -76361913 - L1MC4a LINE L1 -601 5583 5343 234 279 29 0 chr3 141675396 141675464 -76361694 + MER5A DNA MER1_type 120 189 0 248 317 50 30 chr3 141675478 141675579 -76361579 + L3 LINE CR1 1249 1351 -226 191 218 91 0 chr3 141676226 141676281 -76360877 - L2 LINE L2 -71 3242 3183 945 248 43 7 chr3 141676588 141676890 -76360268 - L1ME1 LINE L1 -5 6161 5849 1864 172 0 7 chr3 141677191 141677488 -76359670 - AluJo SINE Alu -17 295 1 3188 138 27 14 chr3 141677952 141678379 -76358779 + L1MB7 LINE L1 5606 6043 -141 2201 153 15 20 chr3 141678379 141678771 -76358387 - MLT1B LTR MaLR 0 390 1 3188 138 27 14 chr3 141678771 141678906 -76358252 + L1MB7 LINE L1 6043 6175 -9 542 375 67 14 chr3 141678921 141679204 -76357954 - L2 LINE L2 -78 3194 2897 445 292 191 0 chr3 141679304 141679482 -76357676 + MIR SINE MIR 20 231 -31 1300 305 98 62 chr3 141679519 141680472 -76356686 - L3 LINE CR1 -372 1205 219 2259 99 3 37 chr3 141680711 141681033 -76356125 + AluSx SINE Alu 1 311 -1 199 200 80 0 chr3 141681102 141681152 -76356006 + MIR SINE MIR 103 156 -106 239 286 100 0 chr3 141681335 141681405 -76355753 + L2 LINE L2 3112 3188 -84 405 294 0 10 chr3 141681955 141682057 -76355101 + L3b LINE CR1 1290 1390 -193 287 220 0 0 chr3 141682138 141682188 -76354970 + MIR3 SINE MIR 109 158 -50 582 196 147 6 chr3 141682396 141682556 -76354602 + MER5A DNA MER1_type 4 189 0 23 33 0 0 chr3 141683294 141683324 -76353834 + AT_rich Low_complexity Low_complexity 1 30 0 5478 11 0 0 chr3 141683537 141684151 -76353007 + L1PA2 LINE L1 5539 6152 -3 300 303 110 9 chr3 141685016 141685125 -76352033 + MIR3 SINE MIR 75 194 -14 21 36 0 0 chr3 141685574 141685602 -76351556 + AT_rich Low_complexity Low_complexity 1 28 0 32 26 0 0 chr3 141685753 141685792 -76351366 + AT_rich Low_complexity Low_complexity 1 39 0 497 295 90 17 chr3 141686268 141686556 -76350602 - MLT1L LTR MaLR -48 567 259 1702 243 69 19 chr3 141687910 141688376 -76348782 + LTR16C LTR ERVL 1 489 -2 205 156 0 0 chr3 141688491 141688523 -76348635 + GA-rich Low_complexity Low_complexity 4 35 0 24 32 0 0 chr3 141688671 141688702 -76348456 + AT_rich Low_complexity Low_complexity 1 31 0 422 346 43 47 chr3 141688938 141689149 -76348009 + L2 LINE L2 3043 3252 -20 302 309 16 0 chr3 141689959 141690082 -76347076 - LTR67 LTR ERVL -8 549 425 367 284 41 67 chr3 141690206 141690400 -76346758 - LTR67 LTR ERVL -364 193 5 312 222 139 0 chr3 141690471 141690615 -76346543 + L1ME4a LINE L1 5956 6119 -2 33 0 0 0 chr3 141692897 141692930 -76344228 + AT_rich Low_complexity Low_complexity 1 33 0 282 222 22 22 chr3 141693910 141694000 -76343158 + (CAGAGA)n Simple_repeat Simple_repeat 6 95 0 342 45 0 0 chr3 141694020 141694064 -76343094 + (TG)n Simple_repeat Simple_repeat 1 44 0 1781 186 6 6 chr3 141694822 141695133 -76342025 + AluJo SINE Alu 1 311 -1 930 219 0 10 chr3 141696442 141696647 -76340511 + MER3 DNA MER1_type 1 203 -6 1175 184 54 17 chr3 141696688 141696984 -76340174 - L1MD3 LINE L1 -3 8037 7746 1003 183 5 26 chr3 141696990 141697181 -76339977 + MER5A DNA MER1_type 1 187 -2 228 313 52 17 chr3 141697934 141698049 -76339109 + L2 LINE L2 2918 3036 -236 889 213 6 6 chr3 141698724 141698893 -76338265 - MER5B DNA MER1_type -3 175 7 22 0 0 0 chr3 141698897 141698919 -76338239 + AT_rich Low_complexity Low_complexity 1 22 0 287 374 29 0 chr3 141699553 141699692 -76337466 - L2 LINE L2 -234 3038 2896 1761 200 68 16 chr3 141699736 141700598 -76336560 - L1MD3 LINE L1 -94 7901 6826 280 264 95 5 chr3 141700600 141700705 -76336453 - MIR SINE MIR -65 143 56 2262 104 0 13 chr3 141701227 141701536 -76335622 - AluSc SINE Alu -4 305 1 416 363 22 11 chr3 141703160 141703339 -76333819 + MER5A DNA MER1_type 9 189 0 2159 134 0 0 chr3 141703422 141703729 -76333429 - AluSx SINE Alu -1 311 5 198 0 0 0 chr3 141704010 141704032 -76333126 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 1451 226 10 7 chr3 141704752 141705058 -76332100 - AluJo SINE Alu -5 307 1 22 0 0 0 chr3 141705359 141705381 -76331777 + AT_rich Low_complexity Low_complexity 1 22 0 639 279 124 17 chr3 141705734 141706096 -76331062 - MER57A LTR ERV1 0 403 3 1304 299 37 44 chr3 141706127 141706803 -76330355 - MER57-int LTR ERV1 -437 7100 6430 795 95 0 0 chr3 141706817 141706922 -76330236 - U6 snRNA snRNA -2 105 1 1940 116 58 0 chr3 141707425 141707700 -76329458 - AluSg SINE Alu -19 291 1 901 275 37 47 chr3 141707835 141708474 -76328684 - MER57-int LTR ERV1 -778 6164 2459 3091 209 46 68 chr3 141708641 141710057 -76327101 - MER57-int LTR ERV1 -1498 4195 2658 3795 132 67 3 chr3 141710070 141710699 -76326459 - L1PA16 LINE L1 -19 7585 6917 234 81 0 0 chr3 141710699 141710736 -76326422 + (TTTAA)n Simple_repeat Simple_repeat 4 40 0 7068 27 1 0 chr3 141710736 141711597 -76325561 - L1PA3 LINE L1 -7 6148 5287 6433 29 2 0 chr3 141711598 141712404 -76324754 + L1P LINE L1 4438 5245 -901 * 12160 236 32 40 chr3 141712402 141712572 -76324586 - L1PA16 LINE L1 -675 6929 6759 1827 95 0 0 chr3 141712572 141712803 -76324355 - AluSg/x SINE Alu -14 298 68 12160 236 32 40 chr3 141712803 141714309 -76322849 - L1PA16 LINE L1 -845 6759 5242 1598 146 97 4 chr3 141714309 141714576 -76322582 + AluSg SINE Alu 1 292 -18 12160 236 32 40 chr3 141714576 141719126 -76318032 - L1PA16 LINE L1 -2362 5242 8 556 230 102 71 chr3 141719234 141719441 -76317717 - MER57-int LTR ERV1 -2550 2573 2374 2078 130 38 22 chr3 141719441 141719810 -76317348 - THE1C LTR MaLR 0 375 1 556 230 102 71 chr3 141719810 141720233 -76316925 - MER57-int LTR ERV1 -2749 2374 1874 336 127 99 42 chr3 141720294 141720365 -76316793 - MER34 LTR ERV1 -335 207 133 891 235 84 26 chr3 141720509 141721005 -76316153 - MER57-int LTR ERV1 -3487 1449 882 356 43 0 0 chr3 141721318 141721365 -76315793 + L1PA3 LINE L1 6106 6152 -3 225 313 0 0 chr3 141721417 141721481 -76315677 + CT-rich Low_complexity Low_complexity 3 66 0 746 197 27 14 chr3 141721571 141721718 -76315440 + MER8 DNA MER2_type 48 196 -43 366 85 0 0 chr3 141721748 141721795 -76315363 - Tigger2 DNA MER2_type -2671 47 1 22 0 0 0 chr3 141723083 141723105 -76314053 + AT_rich Low_complexity Low_complexity 1 22 0 2223 184 57 49 chr3 141723165 141723675 -76313483 - MER67A LTR ERV1 -29 514 1 279 219 18 140 chr3 141725586 141725668 -76311490 + MIR SINE MIR 65 131 -131 573 100 0 0 chr3 141725668 141725748 -76311410 + MADE1 DNA Mariner 1 80 0 279 219 18 140 chr3 141725748 141725779 -76311379 + MIR SINE MIR 131 164 -98 1968 235 70 40 chr3 141725911 141726579 -76310579 + L1ME3 LINE L1 5474 6161 -1 259 323 133 38 chr3 141726621 141726779 -76310379 - L2 LINE L2 -182 3090 2918 227 346 78 62 chr3 141726969 141727278 -76309880 - L2 LINE L2 -643 2671 2358 376 345 12 12 chr3 141727356 141727527 -76309631 - LTR16C LTR ERVL 0 491 321 2161 117 3 3 chr3 141727625 141727924 -76309234 + AluSg SINE Alu 1 299 -11 714 267 110 14 chr3 141728363 141728644 -76308514 - MLT1I LTR MaLR -22 387 80 2079 158 120 29 chr3 141728960 141729408 -76307750 + MLT2B1 LTR ERVL 1 554 0 783 0 0 0 chr3 141729897 141729984 -76307174 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 40096 70 5 4 chr3 141729984 141736116 -76301042 - L1PA5 LINE L1 -13 6141 3 2261 112 0 0 chr3 141737164 141737459 -76299699 - AluSg SINE Alu -15 295 1 963 267 59 56 chr3 141737839 141738229 -76298929 - MLT1L LTR MaLR -8 607 217 484 175 7 9 chr3 141738353 141738474 -76298684 + LTR37B LTR ERV1 144 293 -175 286 171 257 48 chr3 141738519 141738624 -76298534 - MLT1L LTR MaLR -488 127 1 337 260 132 9 chr3 141738844 141738950 -76298208 + MIR SINE MIR 37 154 -73 24 85 0 0 chr3 141739362 141739421 -76297737 + AT_rich Low_complexity Low_complexity 1 59 0 300 346 39 31 chr3 141739591 141739721 -76297437 + L2 LINE L2 3142 3272 0 186 279 0 0 chr3 141739773 141739816 -76297342 - L2 LINE L2 -11 3261 3219 204 361 10 21 chr3 141739871 141739968 -76297190 - L2 LINE L2 -482 2832 2737 368 288 100 118 chr3 141740251 141740682 -76296476 - L1MEc LINE L1 -713 2589 2124 392 256 62 19 chr3 141740684 141740844 -76296314 - L1MEc LINE L1 -4863 2068 1902 312 300 9 27 chr3 141740847 141740947 -76296211 - L1MEc LINE L1 -4969 1962 1863 2308 112 3 0 chr3 141740947 141741259 -76295899 - AluSq SINE Alu 0 313 1 283 343 0 0 chr3 141741268 141741434 -76295724 - L1M3de LINE L1 -4697 1956 1791 27 49 0 0 chr3 141741466 141741507 -76295651 + AT_rich Low_complexity Low_complexity 1 41 0 253 272 49 43 chr3 141741560 141741722 -76295436 - L1MEc LINE L1 -4968 1455 1293 9351 193 35 13 chr3 141741988 141743047 -76294111 - L1MC1 LINE L1 -1 6315 5281 2246 82 13 16 chr3 141743047 141743350 -76293808 - AluY SINE Alu -9 302 1 9351 193 35 13 chr3 141743350 141744811 -76292347 - L1MC1 LINE L1 -1035 5281 3695 1988 129 3 0 chr3 141744811 141745098 -76292060 - AluSx SINE Alu -24 288 1 9351 193 35 13 chr3 141745098 141746106 -76291052 - L1MC1 LINE L1 -2621 3695 2711 313 243 71 21 chr3 141746105 141746245 -76290913 - L1MC1 LINE L1 -5944 175 29 * 180 0 0 0 chr3 141747311 141747331 -76289827 + (GGAA)n Simple_repeat Simple_repeat 1 20 0 2240 97 3 0 chr3 141748406 141748695 -76288463 - AluY SINE Alu -19 292 3 25 0 0 0 chr3 141749658 141749683 -76287475 + AT_rich Low_complexity Low_complexity 1 25 0 358 105 26 217 chr3 141751779 141751865 -76285293 + L1M1 LINE L1 13 59 -7506 947 98 0 0 chr3 141751865 141751998 -76285160 - L1MA2 LINE L1 0 6304 6172 358 105 26 217 chr3 141751998 141752063 -76285095 + L1M1 LINE L1 59 135 -7430 * 9729 138 37 5 chr3 141752059 141753569 -76283589 + L1M1 LINE L1 1105 2663 -4902 1991 219 81 55 chr3 141754002 141754582 -76282576 + MLT1G1 LTR MaLR 1 595 0 707 238 116 0 chr3 141754940 141755104 -76282054 - MER63A DNA MER1_type 0 210 28 184 343 41 34 chr3 141755795 141755941 -76281217 - L2 LINE L2 -446 2868 2722 268 286 139 84 chr3 141755941 141756228 -76280930 - MLT1I LTR MaLR 0 409 107 617 175 56 0 chr3 141757053 141757179 -76279979 - MER3 DNA MER1_type -76 133 1 39 0 0 0 chr3 141757457 141757496 -76279662 + AT_rich Low_complexity Low_complexity 1 39 0 283 294 15 0 chr3 141757599 141757667 -76279491 + MER5A DNA MER1_type 121 189 0 292 220 0 17 chr3 141758575 141758634 -76278524 + MER5A DNA MER1_type 132 189 0 1716 181 7 10 chr3 141758999 141759303 -76277855 - AluJo SINE Alu -9 303 1 967 218 63 28 chr3 141759695 141759947 -76277211 + MIR SINE MIR 2 262 0 213 154 0 0 chr3 141759950 141759989 -76277169 + (TTA)n Simple_repeat Simple_repeat 2 40 0 353 317 10 10 chr3 141760400 141760504 -76276654 + MIR3 SINE MIR 93 196 -12 1692 213 70 82 chr3 141760703 141761645 -76275513 - L1ME LINE L1 -667 5564 4659 1668 269 68 49 chr3 141761693 141762491 -76274667 - L1ME LINE L1 -1838 4377 3565 693 110 71 16 chr3 141762693 141762743 -76274415 - L1PA15 LINE L1 -8 6157 6111 189 0 0 0 chr3 141762743 141762764 -76274394 + (TA)n Simple_repeat Simple_repeat 1 21 0 693 110 71 16 chr3 141762764 141762840 -76274318 - L1PA15 LINE L1 -54 6111 6024 2738 133 63 23 chr3 141762856 141763534 -76273624 - L1PA15 LINE L1 -7 6293 5595 1340 251 114 37 chr3 141763561 141764400 -76272758 - L1ME LINE L1 -2669 3546 2643 261 161 54 18 chr3 141764404 141764460 -76272698 - MER4-int LTR ERV1 -5439 1159 1102 239 223 146 0 chr3 141764558 141764661 -76272497 - L1ME LINE L1 -4007 2389 2272 424 274 37 11 chr3 141764776 141764966 -76272192 - L1ME LINE L1 -4604 1792 1598 477 257 60 60 chr3 141765152 141765370 -76271788 + MIR SINE MIR 45 262 0 21 57 0 0 chr3 141765976 141766011 -76271147 + AT_rich Low_complexity Low_complexity 1 35 0 1983 96 0 11 chr3 141766844 141767105 -76270053 + AluSc SINE Alu 40 297 -12 358 303 121 70 chr3 141767701 141768031 -76269127 - L2 LINE L2 -39 3274 2928 1271 188 109 34 chr3 141768317 141768701 -76268457 - MER96B DNA MER1_type -4 413 1 293 119 321 24 chr3 141770453 141770537 -76266621 - L1PA13 LINE L1 -6678 109 1 591 240 169 6 chr3 141770612 141770795 -76266363 + MIR SINE MIR 4 216 -46 1259 169 100 41 chr3 141770988 141771378 -76265780 - MER96B DNA MER1_type -4 413 1 11706 187 42 19 chr3 141771597 141773485 -76263673 + L1PA13 LINE L1 21 2020 -4777 2107 136 3 0 chr3 141773485 141773780 -76263378 + AluSx SINE Alu 1 296 -16 11706 187 42 19 chr3 141773780 141774937 -76262221 + L1PA13 LINE L1 2020 3149 -3648 4884 92 27 0 chr3 141774943 141774959 -76262199 + L1PA13 LINE L1 5450 5464 -699 1568 78 147 0 chr3 141774959 141775177 -76261981 + AluSc SINE Alu 55 304 -5 4884 92 27 0 chr3 141775177 141775855 -76261303 + L1PA13 LINE L1 5464 6163 0 668 249 209 5 chr3 141775878 141776079 -76261079 - MIR SINE MIR -7 255 14 3662 136 14 8 chr3 141777088 141777726 -76259432 + L1MA8 LINE L1 5493 6137 -154 356 141 59 0 chr3 141777726 141777810 -76259348 + L1MA7 LINE L1 6195 6284 -7 732 266 50 0 chr3 141778183 141778382 -76258776 + MER63A DNA MER1_type 1 209 -1 272 320 136 0 chr3 141779067 141779170 -76257988 - L2 LINE L2 -1 3271 3155 21 36 0 0 chr3 141779534 141779562 -76257596 + AT_rich Low_complexity Low_complexity 1 28 0 187 292 46 15 chr3 141781080 141781145 -76256013 - MER5A DNA MER1_type -98 91 25 285 269 161 94 chr3 141782242 141782340 -76254818 - MER5A DNA MER1_type -6 183 70 2815 6 0 16 chr3 141782340 141782656 -76254502 - AluYa5 SINE Alu 0 311 1 285 269 161 94 chr3 141782656 141782706 -76254452 - MER5A DNA MER1_type -119 70 25 352 291 0 0 chr3 141784324 141784410 -76252748 - MIR3 SINE MIR -3 205 120 200 214 24 0 chr3 141784545 141784587 -76252571 - MIR SINE MIR -80 128 86 550 264 28 14 chr3 141785577 141785721 -76251437 + MIR SINE MIR 102 247 -15 382 242 20 20 chr3 141785766 141785865 -76251293 + L2 LINE L2 3215 3313 0 458 290 156 30 chr3 141785888 141786292 -76250866 - LTR16B LTR ERVL -2 462 8 4104 136 3 2 chr3 141786675 141787309 -76249849 + MER41B LTR ERV1 1 635 0 191 242 178 4 chr3 141787467 141787546 -76249612 - MIR SINE MIR -65 143 76 420 113 0 0 chr3 141788108 141788170 -76248988 - L1P4 LINE L1 -408 5755 5694 1748 233 39 31 chr3 141789235 141789776 -76247382 + L1ME1 LINE L1 5618 6162 -4 26 0 0 0 chr3 141789779 141789805 -76247353 + AT_rich Low_complexity Low_complexity 1 26 0 219 256 119 88 chr3 141791223 141791383 -76245775 + MIR SINE MIR 40 204 -58 5529 121 143 16 chr3 141791843 141792935 -76244223 - Tigger3b DNA MER2_type 0 1231 1 1206 195 41 108 chr3 141792952 141793341 -76243817 + MLT1A1 LTR MaLR 1 363 -2 702 221 29 0 chr3 141793712 141793884 -76243274 + MER104 DNA MER2_type 1 177 -3 239 263 74 40 chr3 141793903 141794098 -76243060 - MLT1J2 LTR MaLR 0 450 266 362 235 73 15 chr3 141794165 141794301 -76242857 - MLT1I LTR MaLR -281 128 1 545 228 34 7 chr3 141794673 141794822 -76242336 - MER104 DNA Tc2 -3 177 25 1605 195 39 72 chr3 141795054 141795465 -76241693 + MLT1D LTR MaLR 39 433 -72 2553 71 0 0 chr3 141795465 141795773 -76241385 + AluY SINE Alu 1 308 -3 1605 195 39 72 chr3 141795773 141795844 -76241314 + MLT1D LTR MaLR 433 505 0 189 107 0 0 chr3 141796142 141796170 -76240988 + (A)n Simple_repeat Simple_repeat 1 28 0 5165 77 10 0 chr3 141797293 141797973 -76239185 - L1PA10 LINE L1 -15 6153 5467 518 247 175 0 chr3 141798255 141798409 -76238749 + MER5A DNA MER1_type 9 189 0 414 328 17 0 chr3 141798411 141798530 -76238628 + L2 LINE L2 3150 3270 -2 793 275 16 8 chr3 141799212 141799463 -76237695 - LTR16B LTR ERVL 0 464 212 553 310 69 5 chr3 141799868 141800071 -76237087 + MIR SINE MIR 32 247 -15 1028 182 35 0 chr3 141801127 141801325 -76235833 - MER3 DNA MER1_type -4 205 1 270 350 0 12 chr3 141801326 141801406 -76235752 - MER5B DNA MER1_type -98 80 2 180 279 23 0 chr3 141801549 141801592 -76235566 - MIR SINE MIR -60 148 105 599 76 0 0 chr3 141802316 141802395 -76234763 - MADE1 DNA Mariner 0 80 2 299 295 162 0 chr3 141802698 141802803 -76234355 - L2 LINE L2 -2 3270 3149 1599 189 65 52 chr3 141802835 141803296 -76233862 + MLT1C LTR MaLR 1 467 0 1175 154 0 1 chr3 141803301 141803621 -76233537 - MLT1A1 LTR MaLR 0 365 6 674 268 123 9 chr3 141803672 141803900 -76233258 + MIR SINE MIR 9 262 0 217 267 0 33 chr3 141804067 141804127 -76233031 - L2 LINE L2 -10 3262 3205 642 235 7 7 chr3 141804186 141804339 -76232819 - L2 LINE L2 0 3313 3161 1815 168 27 40 chr3 141804339 141804713 -76232445 + MSTB LTR MaLR 57 425 -1 994 204 59 40 chr3 141804788 141805160 -76231998 + HAL1b LINE L1 727 1105 -243 1952 195 54 48 chr3 141805176 141805678 -76231480 - MLT1D LTR MaLR 0 505 1 4595 165 36 3 chr3 141805726 141806886 -76230272 + L1MB3 LINE L1 4891 6096 -87 1801 202 85 8 chr3 141806935 141807415 -76229743 - Charlie1b DNA MER1_type -1 522 6 36 0 0 0 chr3 141808594 141808630 -76228528 + AT_rich Low_complexity Low_complexity 1 36 0 252 395 52 8 chr3 141808826 141808960 -76228198 + MIR SINE MIR 4 143 -119 481 304 87 31 chr3 141809009 141809298 -76227860 + L2 LINE L2 2562 2866 -448 275 218 18 0 chr3 141809302 141809357 -76227801 - MER81 DNA DNA 0 114 59 279 290 148 44 chr3 141809389 141809572 -76227586 + L2 LINE L2 2872 3073 -199 314 255 149 0 chr3 141809601 141809695 -76227463 - MER91C DNA MER1_type 0 140 33 297 0 0 0 chr3 141809794 141809827 -76227331 + (TA)n Simple_repeat Simple_repeat 1 33 0 341 357 16 0 chr3 141809849 141809975 -76227183 + L2 LINE L2 3186 3313 0 22 35 0 0 chr3 141810041 141810070 -76227088 + AT_rich Low_complexity Low_complexity 1 29 0 488 306 104 33 chr3 141810192 141810499 -76226659 + L1MC/D LINE L1 4797 5125 -1021 2097 121 34 0 chr3 141810531 141810828 -76226330 - AluSg SINE Alu -3 307 1 246 62 0 0 chr3 141810834 141810866 -76226292 + (TTTTC)n Simple_repeat Simple_repeat 3 34 0 2440 57 0 30 chr3 141810866 141811200 -76225958 - LTR17 LTR ERV1 -454 326 3 2331 45 0 0 chr3 141811202 141811494 -76225664 - HERV17 LTR ERV1 0 8626 8335 304 26 0 0 chr3 141811484 141811523 -76225635 - HERV17 LTR ERV1 -1078 7548 7510 * 12670 46 4 1 chr3 141811516 141813112 -76224046 - HERV17 LTR ERV1 -2607 6019 4418 517 279 132 32 chr3 141813122 141813528 -76223630 + L1MC/D LINE L1 5159 5598 -768 191 189 0 122 chr3 141813610 141813700 -76223458 - L2 LINE L2 -91 3222 3144 392 257 70 4 chr3 141813909 141814134 -76223024 + L1ME3A LINE L1 1512 1809 -4785 758 235 46 35 chr3 141814255 141814515 -76222643 + L1ME3A LINE L1 5804 6066 -498 727 174 78 6 chr3 141814516 141814683 -76222475 + LOR1b LTR ERV1 1 179 -282 1536 121 9 0 chr3 141814691 141814915 -76222243 + LOR1a LTR ERV1 272 497 0 701 275 112 0 chr3 141814915 141815148 -76222010 + L1ME3A LINE L1 6064 6322 -242 249 128 0 0 chr3 141815187 141815234 -76221924 + (TA)n Simple_repeat Simple_repeat 2 48 0 256 321 25 12 chr3 141815453 141815534 -76221624 - L2 LINE L2 -278 3035 2954 261 326 70 16 chr3 141815642 141815829 -76221329 - L1MEd LINE L1 -5412 707 511 1949 109 15 4 chr3 141815834 141816123 -76221035 - AluSg SINE Alu 0 304 13 2107 177 62 2 chr3 141816133 141816534 -76220624 + L1P LINE L1 11 435 -5711 7537 43 0 1 chr3 141816536 141817597 -76219561 + L1PA4 LINE L1 5095 6154 -1 315 273 11 0 chr3 141817704 141817792 -76219366 + L1MC4 LINE L1 6615 6703 -1339 180 0 0 0 chr3 141817792 141817812 -76219346 + (TA)n Simple_repeat Simple_repeat 2 21 0 4026 167 113 50 chr3 141817812 141818668 -76218490 + MER21A LTR ERV1 13 922 -9 272 250 0 16 chr3 141819767 141819831 -76217327 + LTR16A1 LTR ERVL 395 457 0 36397 62 8 14 chr3 141820667 141821297 -76215861 - L1PA6 LINE L1 -2 6152 5520 2279 89 14 0 chr3 141821297 141821588 -76215570 + AluY SINE Alu 1 295 -16 36397 62 8 14 chr3 141821588 141826519 -76210639 - L1PA6 LINE L1 -634 5520 623 648 94 12 0 chr3 141826517 141826602 -76210556 - L1PA6 LINE L1 -6048 98 13 * 2116 120 19 80 chr3 141826792 141827167 -76209991 + MLT2D LTR ERVL 1 352 -62 216 0 0 0 chr3 141827187 141827211 -76209947 + (CA)n Simple_repeat Simple_repeat 1 24 0 448 237 173 0 chr3 141827659 141827798 -76209360 + MER5A DNA MER1_type 9 171 -18 1831 156 14 65 chr3 141827814 141828185 -76208973 + MLT1A1 LTR MaLR 14 365 0 221 308 22 22 chr3 141828272 141828363 -76208795 - MIR SINE MIR -96 166 76 378 61 0 0 chr3 141828681 141828730 -76208428 + (TG)n Simple_repeat Simple_repeat 2 50 0 2281 27 0 0 chr3 141829173 141829435 -76207723 + L1PA5 LINE L1 5887 6148 -6 839 137 191 0 chr3 141829921 141830089 -76207069 + MER3 DNA MER1_type 1 200 -9 685 182 0 0 chr3 141831488 141831598 -76205560 - Tigger3(Golem) DNA MER2_type 0 3029 2920 723 259 107 72 chr3 141832187 141832550 -76204608 - LTR16A1 LTR ERVL -1 456 81 1101 156 6 6 chr3 141832550 141832730 -76204428 + MLT1B LTR MaLR 1 180 -210 1402 62 0 0 chr3 141832730 141832907 -76204251 - L1PA7 LINE L1 -691 5481 5305 5313 51 1 22 chr3 141832907 141833574 -76203584 + L1PA7 LINE L1 5497 6153 -1 931 166 85 67 chr3 141833575 141833798 -76203360 + MLT1B LTR MaLR 164 390 0 382 320 39 0 chr3 141833901 141834029 -76203129 - MIR SINE MIR -118 144 12 212 0 36 0 chr3 141834117 141834145 -76203013 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 31 26 0 0 chr3 141834331 141834369 -76202789 + AT_rich Low_complexity Low_complexity 1 38 0 284 321 119 0 chr3 141835138 141835247 -76201911 - L2 LINE L2 0 3272 3151 941 189 16 32 chr3 141835310 141835500 -76201658 - MER5A DNA MER1_type -1 188 2 759 158 139 0 chr3 141835812 141835970 -76201188 + MER5A DNA MER1_type 1 180 -9 293 291 8 51 chr3 141836230 141836347 -76200811 + MIR SINE MIR 79 190 -72 892 184 17 0 chr3 141836703 141836882 -76200276 + MER5A DNA MER1_type 1 182 -7 1088 176 33 11 chr3 141837544 141837726 -76199432 + MER58A DNA MER1_type 37 222 -2 28 29 0 0 chr3 141837912 141837947 -76199211 + AT_rich Low_complexity Low_complexity 1 35 0 6960 123 66 22 chr3 141837976 141838241 -76198917 + Tigger3b DNA MER2_type 1 253 -2775 1897 153 0 3 chr3 141838241 141838535 -76198623 - AluSx SINE Alu -19 293 1 6960 123 66 22 chr3 141838535 141839447 -76197711 + Tigger3b DNA MER2_type 253 1230 -1 439 269 81 7 chr3 141839511 141839660 -76197498 - MIR SINE MIR -55 207 48 256 32 0 0 chr3 141839701 141839732 -76197426 - L1PA13 LINE L1 -4529 2258 2228 544 165 161 124 chr3 141839732 141839974 -76197184 - MER112 DNA MER1_type -2 254 4 231 345 0 30 chr3 141839997 141840162 -76196996 + GA-rich Low_complexity Low_complexity 2 161 0 3474 91 8 4 chr3 141840353 141840836 -76196322 + L1PB3 LINE L1 5663 6147 -7 217 240 0 20 chr3 141840838 141840888 -76196270 + (TATG)n Simple_repeat Simple_repeat 2 50 0 283 83 0 0 chr3 141840888 141840924 -76196234 - L1P5 LINE L1 -456 5698 5663 46 19 0 0 chr3 141840934 141840987 -76196171 + AT_rich Low_complexity Low_complexity 1 53 0 236 339 36 0 chr3 141841463 141841575 -76195583 - MIR SINE MIR -135 127 12 676 294 43 13 chr3 141844295 141844530 -76192628 + MIR SINE MIR 21 262 0 2202 114 42 36 chr3 141844779 141845139 -76192019 + THE1B LTR MaLR 3 364 0 560 107 0 0 chr3 141845202 141845286 -76191872 - Alu SINE Alu -5 307 224 194 339 33 33 chr3 141845291 141845412 -76191746 - MIR SINE MIR -131 131 11 306 267 52 0 chr3 141846257 141846392 -76190766 - MIR3 SINE MIR -45 163 22 203 260 0 0 chr3 141846468 141846518 -76190640 + L2 LINE L2 2919 2968 -304 285 244 13 13 chr3 141847071 141847149 -76190009 - AluJ/FLAM SINE Alu -224 78 1 194 247 39 26 chr3 141847521 141847598 -76189560 - L2 LINE L2 -339 2975 2898 2447 79 0 7 chr3 141848722 141849027 -76188131 - AluY SINE Alu -8 303 1 231 316 71 25 chr3 141849526 141849722 -76187436 - L2 LINE L2 -556 2758 2554 992 181 18 0 chr3 141849734 141849905 -76187253 + AluJo SINE Alu 122 295 -17 319 268 115 32 chr3 141851766 141851923 -76185235 + MER5A DNA MER1_type 20 189 0 217 170 43 0 chr3 141852136 141852183 -76184975 + MIR SINE MIR 102 150 -112 2264 81 13 45 chr3 141852209 141852351 -76184807 + AluSp SINE Alu 1 146 -167 2604 56 0 7 chr3 141852351 141852657 -76184501 + AluY SINE Alu 1 304 -7 2264 81 13 45 chr3 141852657 141852824 -76184334 + AluSp SINE Alu 146 300 -13 656 136 9 27 chr3 141852852 141852962 -76184196 + AluJo/FLAM SINE Alu 24 131 -181 2086 125 10 3 chr3 141852965 141853261 -76183897 + AluSq SINE Alu 1 298 -15 359 100 100 0 chr3 141853275 141853335 -76183823 + L1MB1 LINE L1 6111 6176 -13 1758 117 0 12 chr3 141853338 141853473 -76183685 + AluSp SINE Alu 1 133 -180 2364 108 0 0 chr3 141853473 141853780 -76183378 + AluSx SINE Alu 1 307 -5 1758 117 0 12 chr3 141853780 141853891 -76183267 + AluSp SINE Alu 133 244 -69 558 0 0 0 chr3 141855505 141855567 -76181591 + (GGAA)n Simple_repeat Simple_repeat 1 62 0 208 121 0 0 chr3 141855611 141855644 -76181514 + (CAGG)n Simple_repeat Simple_repeat 3 35 0 522 290 54 40 chr3 141855644 141855920 -76181238 - LTR16B LTR ERVL -151 313 34 410 230 0 0 chr3 141856409 141856496 -76180662 - MIR SINE MIR -115 147 61 382 303 67 0 chr3 141858192 141858357 -76178801 - MIR SINE MIR -36 226 51 205 200 0 0 chr3 141858555 141858595 -76178563 + A-rich Low_complexity Low_complexity 4 43 0 1684 158 28 11 chr3 141859587 141859871 -76177287 + AluJo SINE Alu 1 289 -23 268 241 17 0 chr3 141859938 141859996 -76177162 - L2 LINE L2 -50 3263 3205 * 496 286 57 97 chr3 141859985 141860481 -76176677 + L2 LINE L2 2172 2647 -667 943 264 147 32 chr3 141860562 141860971 -76176187 + L2 LINE L2 2858 3313 0 228 280 97 80 chr3 141860973 141861284 -76175874 - L2 LINE L2 -105 3208 2893 635 204 31 1 chr3 141861307 141861452 -76175706 + L1ME2 LINE L1 6030 6163 -1 288 0 0 0 chr3 141862344 141862376 -76174782 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 237 33 0 0 chr3 141863051 141863081 -76174077 + (TTG)n Simple_repeat Simple_repeat 2 31 0 21 0 0 0 chr3 141863239 141863260 -76173898 + AT_rich Low_complexity Low_complexity 1 21 0 784 257 40 24 chr3 141863748 141863997 -76173161 + L1ME4a LINE L1 5603 5855 -266 23 0 0 0 chr3 141864166 141864189 -76172969 + AT_rich Low_complexity Low_complexity 1 23 0 1089 116 0 0 chr3 141865100 141865247 -76171911 - AluSq/x SINE Alu -166 147 1 323 273 30 8 chr3 141865618 141865750 -76171408 - L1ME4a LINE L1 -9 6112 5978 295 326 0 0 chr3 141866087 141866176 -76170982 - MIR3 SINE MIR -28 180 92 21 0 0 0 chr3 141866656 141866677 -76170481 + AT_rich Low_complexity Low_complexity 1 21 0 353 336 19 0 chr3 141867057 141867161 -76169997 + L2 LINE L2 3158 3263 -9 1517 211 3 10 chr3 141867169 141867458 -76169700 + AluJo SINE Alu 1 287 -25 4695 140 42 22 chr3 141867475 141867831 -76169327 - L1PB4 LINE L1 -7 6149 5802 243 0 0 0 chr3 141867831 141867858 -76169300 + (TG)n Simple_repeat Simple_repeat 2 28 0 4695 140 42 22 chr3 141867858 141868330 -76168828 - L1PB4 LINE L1 -354 5802 5290 245 51 26 0 chr3 141868330 141868369 -76168789 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 4695 140 42 22 chr3 141868369 141868624 -76168534 - L1PB4 LINE L1 -866 5290 5042 6087 156 18 13 chr3 141868637 141870890 -76166268 - L1PB1 LINE L1 0 6151 3883 537 160 10 0 chr3 141870894 141870994 -76166164 - L1MA2 LINE L1 -4 6300 6200 1238 248 35 6 chr3 141870996 141871335 -76165823 - L1PA15-16 LINE L1 -6453 396 48 21 0 0 0 chr3 141871335 141871356 -76165802 + AT_rich Low_complexity Low_complexity 1 21 0 1045 271 109 85 chr3 141871576 141872818 -76164340 + HAL1 LINE L1 21 1292 -1215 2079 221 77 81 chr3 141872819 141873780 -76163378 + HAL1 LINE L1 1441 2397 -110 518 204 310 0 chr3 141875192 141875334 -76161824 - MER5A DNA MER1_type 0 189 4 231 326 70 23 chr3 141876105 141876191 -76160967 - L2 LINE L2 -46 3226 3137 2153 128 0 0 chr3 141877267 141877668 -76159490 + AluSq SINE Alu 1 401 0 225 383 92 23 chr3 141877973 141878190 -76158968 + L2 LINE L2 2745 2976 -338 212 306 71 31 chr3 141878225 141878323 -76158835 - L2 LINE L2 -4 3309 3208 696 221 154 0 chr3 141878371 141878566 -76158592 + MER57A LTR ERV1 152 376 -27 1742 175 3 0 chr3 141878570 141878885 -76158273 + L1MA6 LINE L1 5979 6294 -6 1194 183 117 17 chr3 141879094 141879384 -76157774 - MLT1F LTR MaLR 0 542 224 292 289 137 70 chr3 141879430 141879523 -76157635 - LTR67 LTR ERVL -268 289 204 1851 162 0 36 chr3 141879523 141879825 -76157333 - AluJb SINE Alu -21 291 1 292 289 137 70 chr3 141879825 141880001 -76157157 - LTR67 LTR ERVL -353 204 2 4080 87 40 18 chr3 141880228 141880849 -76156309 + L1PB1 LINE L1 5514 6148 -3 21 0 0 0 chr3 141881291 141881312 -76155846 + AT_rich Low_complexity Low_complexity 1 21 0 218 275 203 36 chr3 141881516 141881654 -76155504 - MIR SINE MIR -55 207 47 1036 275 92 2 chr3 141882015 141882418 -76154740 - LTR16A LTR ERVL -6 444 6 637 242 39 22 chr3 141882783 141882965 -76154193 + MIR3 SINE MIR 23 207 -1 1149 211 14 5 chr3 141882970 141883188 -76153970 + MER58A DNA MER1_type 1 220 -4 247 327 185 19 chr3 141884043 141884205 -76152953 - MIR3 SINE MIR -3 205 17 748 249 64 16 chr3 141884406 141884770 -76152388 + L1M4 LINE L1 3070 3454 -2692 711 203 8 0 chr3 141884770 141884888 -76152270 + FLAM_A SINE Alu 1 119 -14 803 189 0 0 chr3 141884964 141885123 -76152035 - L1M4 LINE L1 -1906 4240 4082 2847 80 0 0 chr3 141885205 141885578 -76151580 - L1PA7 LINE L1 -12 6142 5770 1846 74 4 19 chr3 141885578 141885828 -76151330 - L1PA5 LINE L1 -6 6148 5896 1966 50 0 0 chr3 141885828 141886088 -76151070 - L1P LINE L1 -1225 4921 4662 30822 98 12 64 chr3 141886116 141892213 -76144945 - L1PA5 LINE L1 -372 5782 12 666 230 172 6 chr3 141892315 141892489 -76144669 + MER45C DNA AcHobo 8 210 -743 632 233 126 31 chr3 141892601 141892824 -76144334 + MER45C DNA AcHobo 707 950 -3 616 226 168 0 chr3 141892841 141892996 -76144162 + MER5A DNA MER1_type 9 189 0 367 263 158 24 chr3 141893945 141894042 -76143116 + Charlie7 DNA MER1_type 9 92 -2520 2252 98 0 0 chr3 141894042 141894338 -76142820 + AluSq SINE Alu 1 296 -17 2296 74 6 35 chr3 141894338 141894650 -76142508 + AluSp SINE Alu 1 303 -10 367 263 158 24 chr3 141894650 141894760 -76142398 + Charlie7 DNA MER1_type 91 245 -2367 2381 116 0 0 chr3 141894994 141895305 -76141853 - AluSx SINE Alu -1 311 1 250 174 22 0 chr3 141896185 141896231 -76140927 - MSTB2 LTR MaLR 0 457 411 6658 16 0 17 chr3 141896487 141897164 -76139994 - L1PA3 LINE L1 0 6155 5493 2830 35 0 0 chr3 141897164 141897482 -76139676 - AluYb8 SINE Alu 0 318 1 6658 16 0 17 chr3 141897482 141897626 -76139532 - L1PA3 LINE L1 -662 5493 5348 21 36 0 0 chr3 141897921 141897949 -76139209 + AT_rich Low_complexity Low_complexity 1 28 0 420 326 45 8 chr3 141898599 141898731 -76138427 + MIR3 SINE MIR 7 143 -65 1044 243 46 13 chr3 141898749 141899054 -76138104 - LTR16A LTR ERVL -8 442 128 1847 212 14 64 chr3 141899062 141899638 -76137520 - L1MC4 LINE L1 -59 7983 7437 391 241 59 32 chr3 141899663 141899850 -76137308 - L1MC5 LINE L1 -51 7910 7719 488 230 9 0 chr3 141899862 141899975 -76137183 + L2 LINE L2 2291 2404 -910 1015 266 8 0 chr3 141900224 141900468 -76136690 + MIR SINE MIR 7 252 -10 293 208 13 0 chr3 141900923 141901000 -76136158 + (TGGA)n Simple_repeat Simple_repeat 4 81 0 228 35 0 0 chr3 141901073 141901102 -76136056 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 439 241 234 0 chr3 141901358 141901499 -76135659 + MER5A DNA MER1_type 9 182 -7 38 22 0 0 chr3 141901532 141901577 -76135581 + AT_rich Low_complexity Low_complexity 1 45 0 1784 128 84 0 chr3 141901620 141901894 -76135264 + AluSp SINE Alu 2 298 -15 871 211 27 31 chr3 141901957 141902225 -76134933 - L1ME1 LINE L1 -1 6177 5908 1401 253 117 44 chr3 141902837 141903616 -76133542 - L1MEc LINE L1 -5143 1253 418 1243 241 127 29 chr3 141903890 141904309 -76132849 - L1MC4a LINE L1 -1892 5916 5457 207 162 0 0 chr3 141904309 141904346 -76132812 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 433 323 68 5 chr3 141905470 141905662 -76131496 - MIR SINE MIR -6 256 53 210 323 0 0 chr3 141905857 141905922 -76131236 - MIR SINE MIR -57 151 87 297 0 0 0 chr3 141906047 141906080 -76131078 + (TG)n Simple_repeat Simple_repeat 2 34 0 1919 155 63 27 chr3 141907031 141907554 -76129604 + MLT2A2 LTR ERVL 1 546 -8 720 273 65 40 chr3 141907703 141908103 -76129055 - LTR16A LTR ERVL -4 446 37 421 245 49 70 chr3 141908410 141908553 -76128605 + MIR SINE MIR 19 158 -104 192 40 0 0 chr3 141909796 141909821 -76127337 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2151 107 0 0 chr3 141909823 141910104 -76127054 - AluSx SINE Alu -31 281 1 2388 93 3 0 chr3 141910970 141911282 -76125876 - AluSp SINE Alu 0 313 1 2029 165 10 47 chr3 141911543 141911948 -76125210 - MLT1B LTR MaLR 0 390 1 6307 155 37 16 chr3 141913326 141915046 -76122112 - L1MC1 LINE L1 -28 6585 4831 1206 143 0 0 chr3 141915046 141915214 -76121944 - FRAM SINE Alu -12 164 1 7738 240 27 19 chr3 141915214 141917721 -76119437 - L1MC1 LINE L1 -1584 4842 2364 1219 140 61 31 chr3 141917769 141917997 -76119161 - MER46A DNA MER2_type -1 235 1 2554 121 103 66 chr3 141918240 141918383 -76118775 - L1MC1 LINE L1 -4105 2321 2185 1721 174 7 3 chr3 141918383 141918671 -76118487 - AluJb SINE Alu -23 289 1 2554 121 103 66 chr3 141918671 141919178 -76117980 - L1MC1 LINE L1 -4241 2185 1555 203 59 0 29 chr3 141919179 141919213 -76117945 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 8338 25 0 2 chr3 141919213 141920995 -76116163 - L1PA3 LINE L1 -22 6133 4354 736 11 0 0 chr3 141920994 141921084 -76116074 + L1PA3 LINE L1 4249 4338 -1808 * 2284 137 67 24 chr3 141921081 141921219 -76115939 - L1MC1 LINE L1 -4862 1564 1433 318 50 0 0 chr3 141921219 141921259 -76115899 + (TGG)n Simple_repeat Simple_repeat 2 41 0 2284 137 67 24 chr3 141921259 141921611 -76115547 - L1MC1 LINE L1 -4993 1433 1053 * 15542 201 45 21 chr3 141921606 141921737 -76115421 - L1PA15 LINE L1 -6 6810 6684 1737 157 59 3 chr3 141921737 141922023 -76115135 - AluSx SINE Alu -10 302 1 15542 201 45 21 chr3 141922023 141928514 -76108644 - L1PA15 LINE L1 -132 6684 1 251 67 0 0 chr3 141928525 141928570 -76108588 - L1MC1 LINE L1 -5367 1059 1015 4147 173 30 86 chr3 141928601 141929671 -76107487 - L1MC1 LINE L1 -5397 1029 20 222 344 62 0 chr3 141929802 141929898 -76107260 - L2 LINE L2 -20 3252 3151 2177 146 0 37 chr3 141931309 141931659 -76105499 - MER1B DNA MER1_type 0 337 1 1435 176 4 20 chr3 141932293 141932548 -76104610 + AluJo SINE Alu 62 312 0 2020 83 17 0 chr3 141933661 141933950 -76103208 - L1MA4A LINE L1 -14 6289 5996 399 301 37 31 chr3 141933965 141934128 -76103030 + MIR SINE MIR 53 216 -46 504 327 88 5 chr3 141934683 141934888 -76102270 + MIR SINE MIR 17 238 -24 5034 112 12 7 chr3 141935348 141936159 -76100999 - L1PA13 LINE L1 -4 6159 5345 216 0 0 0 chr3 141936660 141936684 -76100474 + (TG)n Simple_repeat Simple_repeat 2 25 0 648 244 57 6 chr3 141937013 141937189 -76099969 - LTR50 LTR ERVL -610 185 1 21 0 0 0 chr3 141937352 141937373 -76099785 + AT_rich Low_complexity Low_complexity 1 21 0 1888 163 127 55 chr3 141937523 141937997 -76099161 - L1MA9 LINE L1 -38 6274 5759 261 0 0 0 chr3 141937997 141938026 -76099132 + (TG)n Simple_repeat Simple_repeat 2 30 0 1888 163 127 55 chr3 141938026 141938065 -76099093 - L1MA9 LINE L1 -553 5759 5724 3079 77 26 0 chr3 141938077 141938492 -76098666 - L1PA11 LINE L1 0 6174 5749 223 182 0 0 chr3 141939142 141939186 -76097972 + T-rich Low_complexity Low_complexity 1 44 0 302 250 14 0 chr3 141940070 141940142 -76097016 + MER5A DNA MER1_type 3 75 -114 649 204 0 0 chr3 141940144 141940252 -76096906 + FLAM_C SINE Alu 3 110 -33 355 83 33 0 chr3 141940292 141940352 -76096806 + (GGA)n Simple_repeat Simple_repeat 3 64 0 205 257 0 20 chr3 141940675 141940776 -76096382 + GA-rich Low_complexity Low_complexity 1 99 0 668 285 60 29 chr3 141940889 141941272 -76095886 + L1MC4a LINE L1 5512 5906 -1902 192 125 0 0 chr3 141941309 141941341 -76095817 + (TA)n Simple_repeat Simple_repeat 1 32 0 230 236 16 49 chr3 141941350 141941473 -76095685 + L1ME LINE L1 5771 5889 -232 372 187 0 13 chr3 141942556 141942631 -76094527 + MER116 DNA Mariner 7 80 0 204 125 0 0 chr3 141943094 141943126 -76094032 + (GA)n Simple_repeat Simple_repeat 1 32 0 4569 142 22 11 chr3 141943314 141945035 -76092123 + L1PA16 LINE L1 4376 6154 -12 294 71 0 0 chr3 141945108 141945150 -76092008 + L1P4 LINE L1 5392 5433 -733 425 228 207 0 chr3 141945151 141945296 -76091862 - MER5A DNA MER1_type -2 187 13 329 311 8 0 chr3 141946423 141946542 -76090616 + MER94 DNA DNA 15 134 0 608 191 196 24 chr3 141946599 141946895 -76090263 - MER31B LTR ERV1 0 466 3 337 259 35 43 chr3 141947370 141947486 -76089672 + MIR3 SINE MIR 93 207 -1 325 234 45 153 chr3 141947657 141948127 -76089031 + L1ME3 LINE L1 5674 6092 -70 398 293 150 29 chr3 141948809 141949178 -76087980 + L2 LINE L2 2657 3054 -259 1841 261 73 45 chr3 141949209 141949365 -76087793 + MER115 DNA AcHobo 4 154 -539 1363 186 42 80 chr3 141949365 141949742 -76087416 + MLT1A1 LTR MaLR 1 363 -2 1841 261 73 45 chr3 141949742 141950256 -76086902 + MER115 DNA AcHobo 154 693 0 21 0 0 0 chr3 141950315 141950336 -76086822 + AT_rich Low_complexity Low_complexity 1 21 0 207 290 235 55 chr3 141950359 141950576 -76086582 + L2 LINE L2 3046 3301 -12 1281 197 42 49 chr3 141950579 141950863 -76086295 + AluJo SINE Alu 1 282 -30 230 0 0 32 chr3 141950866 141950897 -76086261 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 190 308 164 10 chr3 141950960 141951064 -76086094 - L2 LINE L2 -32 3240 3121 2154 264 97 31 chr3 141951969 141953075 -76084083 - L2 LINE L2 0 3313 2140 2108 157 13 18 chr3 141953312 141953695 -76083463 - MSTD LTR MaLR -5 391 11 42487 36 2 2 chr3 141954048 141960203 -76076955 + L1PA3 LINE L1 2 6152 -3 183 0 105 26 chr3 141960206 141960244 -76076914 + A-rich Low_complexity Low_complexity 3 43 0 265 321 88 36 chr3 141960247 141960384 -76076774 - MIR3 SINE MIR -38 170 27 365 273 50 0 chr3 141960397 141960518 -76076640 + MIR SINE MIR 92 218 -44 2155 81 0 78 chr3 141960520 141960842 -76076316 - AluSc SINE Alu -12 297 1 225 0 0 0 chr3 141960844 141960869 -76076289 + (T)n Simple_repeat Simple_repeat 1 25 0 2194 206 30 76 chr3 141960869 141961564 -76075594 + L1ME1 LINE L1 5488 6144 -22 30 27 0 0 chr3 141961564 141961601 -76075557 + AT_rich Low_complexity Low_complexity 1 37 0 452 280 60 71 chr3 141961903 141962085 -76075073 - MIR3 SINE MIR -21 187 8 599 227 108 40 chr3 141962569 141962847 -76074311 + L1MC4 LINE L1 7605 7901 -141 258 132 75 0 chr3 141962850 141962903 -76074255 + L1MC4 LINE L1 7986 8042 0 249 309 0 12 chr3 141963307 141963388 -76073770 + MIR SINE MIR 24 103 -105 1144 272 123 28 chr3 141963847 141964571 -76072587 - L1M4 LINE L1 -3238 2908 2116 189 195 0 0 chr3 141965310 141965351 -76071807 + (TG)n Simple_repeat Simple_repeat 1 41 0 244 279 15 0 chr3 141965397 141965465 -76071693 - MLT1A1 LTR MaLR 0 365 297 873 329 43 29 chr3 141965520 141966082 -76071076 - L2 LINE L2 -1379 1935 1366 6357 164 11 5 chr3 141966082 141967140 -76070018 - MSTA-int LTR MaLR -586 1065 1 2129 176 64 5 chr3 141967140 141967544 -76069614 - MSTA LTR MaLR 0 428 1 530 206 57 19 chr3 141967544 141967753 -76069405 - L1 LINE L1 -2798 3348 3132 4771 179 32 20 chr3 141967755 141968891 -76068267 + L1MA9 LINE L1 5126 6274 -38 28 29 0 0 chr3 141968891 141968926 -76068232 + AT_rich Low_complexity Low_complexity 1 35 0 928 318 107 24 chr3 141968926 141969636 -76067522 - L2 LINE L2 -1975 1339 571 215 333 0 12 chr3 141969639 141969723 -76067435 - L2 LINE L2 -3159 155 73 240 236 142 61 chr3 141969785 141969933 -76067225 + MIR SINE MIR 53 212 -50 1912 85 75 65 chr3 141970215 141970508 -76066650 + AluSq SINE Alu 1 296 -17 443 266 19 32 chr3 141971341 141971499 -76065659 + MIR SINE MIR 83 238 -24 205 156 0 0 chr3 141971506 141971538 -76065620 + CT-rich Low_complexity Low_complexity 2 33 0 413 266 239 76 chr3 141971563 141971973 -76065185 + L2 LINE L2 2829 3305 -8 234 105 0 0 chr3 141973189 141973227 -76063931 + (GA)n Simple_repeat Simple_repeat 1 38 0 382 234 31 55 chr3 141973227 141973355 -76063803 - MIR SINE MIR -132 130 6 1928 181 31 74 chr3 141973428 141973649 -76063509 - MER31B LTR ERV1 0 466 237 2061 189 80 2 chr3 141973649 141974073 -76063085 - MSTB2 LTR MaLR 0 457 1 1928 181 31 74 chr3 141974073 141974338 -76062820 - MER31B LTR ERV1 -229 237 1 611 220 189 0 chr3 141974550 141974709 -76062449 - MER5A DNA MER1_type 0 189 1 24 32 0 0 chr3 141976165 141976196 -76060962 + AT_rich Low_complexity Low_complexity 1 31 0 2147 124 0 10 chr3 141977327 141977641 -76059517 - AluSx SINE Alu -1 311 1 339 242 175 8 chr3 141977766 141977886 -76059272 + MLT1H LTR MaLR 23 162 -387 2152 224 73 12 chr3 141978685 141979194 -76057964 + MLT1F LTR MaLR 3 542 0 1500 135 5 0 chr3 141979655 141979870 -76057288 + AluSg SINE Alu 1 216 -94 483 130 9 111 chr3 141979916 141980069 -76057089 + AluSg/x SINE Alu 188 329 0 235 250 0 0 chr3 141980392 141980440 -76056718 - MER5B DNA MER1_type -1 177 130 600 211 161 22 chr3 141980595 141980917 -76056241 - L1MC5 LINE L1 -214 7747 7381 638 227 0 0 chr3 141980950 141981069 -76056089 + FLAM_C SINE Alu 2 120 -23 858 190 95 5 chr3 141981071 141981327 -76055831 - L1MC3 LINE L1 -19 7976 7586 904 166 0 7 chr3 141981328 141981479 -76055679 + MLT1A1 LTR MaLR 1 150 -215 748 137 0 0 chr3 141981485 141981602 -76055556 - L1MC3 LINE L1 -1171 6614 6498 954 189 106 83 chr3 141981622 141981922 -76055236 - L1MC5 LINE L1 -594 7367 7054 2081 106 3 7 chr3 141981922 141982228 -76054930 + AluSx SINE Alu 1 305 0 954 189 106 83 chr3 141982228 141982312 -76054846 - L1MC5 LINE L1 -907 7054 6973 287 285 57 51 chr3 141982769 141982927 -76054231 - MER5B DNA MER1_type -6 172 14 316 215 208 8 chr3 141983192 141983322 -76053836 - MIR SINE MIR -23 239 84 404 239 0 173 chr3 141985425 141985651 -76051507 - MER5A DNA MER1_type -2 187 1 213 208 0 19 chr3 141986885 141986938 -76050220 - L2 LINE L2 -1 3312 3261 324 191 32 0 chr3 141986981 141987044 -76050114 - MER58 DNA MER1_type -1 2419 2355 5602 148 40 13 chr3 141987060 141988831 -76048327 - L1MA8 LINE L1 -3 6288 4479 2101 130 10 0 chr3 141988831 141989123 -76048035 - AluSx SINE Alu -17 295 1 6683 174 137 25 chr3 141989149 141990823 -76046335 - L1MA8 LINE L1 -2006 4140 2280 183 186 186 17 chr3 141993715 141993774 -76043384 + MIR SINE MIR 71 139 -69 2264 101 3 3 chr3 141996509 141996807 -76040351 - AluY SINE Alu -13 298 1 447 281 8 0 chr3 141996872 141997000 -76040158 - MIR SINE MIR -3 259 131 246 316 8 34 chr3 141997571 141997688 -76039470 - MLT1K LTR MaLR -408 180 67 2203 137 0 0 chr3 141998277 141998584 -76038574 + AluSx SINE Alu 5 311 -1 311 209 30 0 chr3 141998992 141999059 -76038099 + L1MC/D LINE L1 5696 5764 -2231 221 233 0 0 chr3 141999164 141999207 -76037951 + MER5B DNA MER1_type 1 43 -135 555 213 123 75 chr3 141999423 141999691 -76037467 - L1MC5 LINE L1 -30 7931 7651 307 253 54 48 chr3 141999692 141999878 -76037280 - L1MC5 LINE L1 -385 7576 7390 * 4721 161 93 100 chr3 141999877 142000190 -76036968 - L1MC3 LINE L1 -3 7782 7468 1703 213 14 11 chr3 142000190 142000552 -76036606 + MLT1A1 LTR MaLR 3 365 0 4721 161 93 100 chr3 142000552 142000814 -76036344 - L1MC3 LINE L1 -317 7468 7205 256 244 61 12 chr3 142000814 142000896 -76036262 - MLT1F1 LTR MaLR -445 122 37 4721 161 93 100 chr3 142000896 142001533 -76035625 - L1MC3 LINE L1 -580 7205 6498 1028 220 91 30 chr3 142001552 142001925 -76035233 - L1MC5 LINE L1 -593 7368 6973 246 276 45 77 chr3 142002393 142002549 -76034609 - MER5B DNA MER1_type -4 174 24 712 161 24 0 chr3 142002785 142002909 -76034249 - FLAM_C SINE Alu -16 127 1 338 208 208 8 chr3 142002962 142003092 -76034066 - MIR SINE MIR -23 239 84 570 261 54 38 chr3 142005343 142005527 -76031631 - MER5A DNA MER1_type -2 187 1 250 276 142 0 chr3 142006741 142006868 -76030290 - L2 LINE L2 -1084 2230 2086 23 33 0 0 chr3 142011415 142011445 -76025713 + AT_rich Low_complexity Low_complexity 1 30 0 253 230 92 23 chr3 142214923 142215010 -75822148 + MIR SINE MIR 95 187 -75 311 191 48 16 chr3 142215159 142215222 -75821936 + MER58 DNA MER1_type 2356 2420 0 308 244 24 0 chr3 142216429 142216511 -75820647 - LTR39 LTR ERV1 -528 255 172 1060 234 176 21 chr3 142218181 142218510 -75818648 - MSTD LTR MaLR -12 384 5 480 240 140 0 chr3 142218521 142218671 -75818487 + MIR SINE MIR 79 249 -13 468 221 0 0 chr3 142218802 142218897 -75818261 - MER3 DNA MER1_type -4 205 111 639 229 13 0 chr3 142218997 142219150 -75818008 + MER89 LTR ERV1 405 559 0 428 236 153 26 chr3 142219197 142219503 -75817655 - L2 LINE L2 -710 2604 2182 271 284 34 11 chr3 142219515 142219603 -75817555 - L2 LINE L2 -3 3269 3180 411 163 0 50 chr3 142219636 142219716 -75817442 + L1MB1 LINE L1 6089 6164 -4 346 287 74 60 chr3 142219830 142220158 -75817000 - L2 LINE L2 -248 3024 2698 211 283 0 0 chr3 142220154 142220207 -75816951 - MER5B DNA MER1_type -50 128 76 * 563 223 134 19 chr3 142220329 142220486 -75816672 + MSTD LTR MaLR 222 396 0 193 300 17 17 chr3 142221048 142221108 -75816050 + L2 LINE L2 3198 3257 -15 3982 186 2 15 chr3 142223091 142223880 -75813278 + HERVH LTR ERV1 2809 3587 -4126 828 203 6 0 chr3 142223871 142224048 -75813110 + HERVH LTR ERV1 3804 3981 -3732 * 412 221 17 0 chr3 142224096 142224200 -75812958 + HERVH LTR ERV1 3962 4072 -2457 3058 186 2 20 chr3 142224361 142224956 -75812202 - HERVH LTR ERV1 -2850 4135 3957 1115 141 11 0 chr3 142224993 142225177 -75811981 - HERVH LTR ERV1 -3720 3993 3808 * 1441 187 4 4 chr3 142225173 142225440 -75811718 - HERVH LTR ERV1 -4126 3587 3321 657 292 55 74 chr3 142225689 142226107 -75811051 + MLT1K LTR MaLR 179 588 0 527 315 46 20 chr3 142227083 142227280 -75809878 - MIR SINE MIR -55 207 6 226 314 95 44 chr3 142227357 142227494 -75809664 + L2 LINE L2 3128 3271 -1 24 0 0 0 chr3 142228578 142228602 -75808556 + AT_rich Low_complexity Low_complexity 1 24 0 5002 211 70 8 chr3 142228949 142230198 -75806960 - L1 LINE L1 -867 5279 3953 298 353 81 0 chr3 142233063 142233199 -75803959 + MIR SINE MIR 8 154 -108 1127 268 14 18 chr3 142233386 142233670 -75803488 + MLT1A1 LTR MaLR 83 365 0 471 228 102 28 chr3 142233866 142234120 -75803038 + L1M4 LINE L1 2140 2412 -3734 1936 156 0 23 chr3 142234128 142234436 -75802722 + AluJo SINE Alu 1 301 -11 1773 255 41 10 chr3 142234467 142234950 -75802208 + MER90 LTR ERV1 114 611 -3 275 133 133 0 chr3 142234951 142235011 -75802147 - MIR SINE MIR -114 148 81 324 271 104 31 chr3 142235034 142235130 -75802028 + MER5B DNA MER1_type 69 171 -7 2284 101 0 3 chr3 142235332 142235639 -75801519 + AluSp SINE Alu 2 307 -6 314 289 12 0 chr3 142235671 142235754 -75801404 - L2 LINE L2 -19 3294 3211 1903 158 30 0 chr3 142236262 142236597 -75800561 + MER90 LTR ERV1 5 349 -226 260 226 16 16 chr3 142236741 142236803 -75800355 + L2 LINE L2 1135 1196 -2118 537 155 69 35 chr3 142237138 142237254 -75799904 - L1PA16 LINE L1 -173 5993 5874 478 119 0 0 chr3 142237254 142237321 -75799837 - MER31B LTR ERV1 -399 67 1 310 233 0 0 chr3 142237331 142237404 -75799754 + LTR30 LTR ERV1 552 624 -98 249 33 0 0 chr3 142237407 142237437 -75799721 + (A)n Simple_repeat Simple_repeat 1 30 0 394 352 78 0 chr3 142237674 142237867 -75799291 + LTR16A LTR ERVL 236 443 -7 249 234 221 13 chr3 142237946 142238100 -75799058 + MIR SINE MIR 11 196 -66 2376 122 0 0 chr3 142238100 142238411 -75798747 + AluSx SINE Alu 1 311 -1 1589 170 45 0 chr3 142238420 142238667 -75798491 + AluJo SINE Alu 3 260 -52 427 140 0 0 chr3 142238832 142238889 -75798269 - AluS SINE Alu -260 58 2 5120 130 36 45 chr3 142239243 142240058 -75797100 - L1PB3 LINE L1 0 6154 5333 7945 32 6 0 chr3 142240058 142241477 -75795681 - L1PA5 LINE L1 -6 6148 4728 5120 130 36 45 chr3 142241477 142241537 -75795621 - L1PB3 LINE L1 -821 5333 5274 3955 103 0 4 chr3 142241537 142242050 -75795108 - MER9 LTR ERVK 0 511 1 5120 130 36 45 chr3 142242050 142242129 -75795029 - L1PB3 LINE L1 -880 5274 5200 369 44 0 0 chr3 142242130 142242175 -75794983 + LTR7 LTR ERV1 1 45 -405 3192 130 8 4 chr3 142242176 142242660 -75794498 + HERVH LTR ERV1 1 486 -7227 6768 160 6 27 chr3 142242690 142243915 -75793243 + HERVH LTR ERV1 808 2006 -5707 243 214 112 11 chr3 142244509 142244598 -75792560 - MLT1D LTR MaLR -135 370 273 309 271 0 0 chr3 142245020 142245090 -75792068 + L1MC4 LINE L1 7441 7510 -532 296 210 10 90 chr3 142246265 142246365 -75790793 + L2 LINE L2 3221 3312 -1 2416 219 112 76 chr3 142246915 142247878 -75789280 + L1MC4 LINE L1 7039 8036 -6 379 86 6 18 chr3 142247877 142247940 -75789218 + L1ME3 LINE L1 5888 5952 -210 * 864 221 36 64 chr3 142247942 142248191 -75788967 + L1ME3 LINE L1 5920 6161 -1 24 0 0 0 chr3 142248193 142248217 -75788941 + AT_rich Low_complexity Low_complexity 1 24 0 247 294 78 49 chr3 142248789 142248891 -75788267 - L2 LINE L2 -12 3260 3156 1582 103 5 5 chr3 142249524 142249738 -75787420 - AluSg/x SINE Alu -8 302 89 21 0 0 0 chr3 142250186 142250207 -75786951 + AT_rich Low_complexity Low_complexity 1 21 0 2400 65 0 3 chr3 142250372 142250665 -75786493 + AluY SINE Alu 1 292 -19 370 335 6 36 chr3 142251689 142251856 -75785302 - MIR3 SINE MIR -13 195 34 517 294 78 6 chr3 142252177 142252357 -75784801 - MIR SINE MIR -1 261 69 2438 77 3 0 chr3 142253044 142253341 -75783817 + AluY SINE Alu 1 298 -13 213 180 0 0 chr3 142253763 142253813 -75783345 + T-rich Low_complexity Low_complexity 1 50 0 998 207 11 5 chr3 142255042 142255230 -75781928 + MER5A DNA MER1_type 1 189 0 3421 47 12 147 chr3 142256843 142257549 -75779609 + L1P LINE L1 4844 5423 -731 9543 137 19 19 chr3 142257704 142260090 -75777068 + HERVH LTR ERV1 800 3587 -4126 3595 172 15 19 chr3 142260084 142260897 -75776261 + HERVH LTR ERV1 3806 4550 -2735 * 1592 149 0 0 chr3 142260889 142261150 -75776008 + HERVH LTR ERV1 5756 6016 -1697 * 3710 111 7 26 chr3 142261131 142261707 -75775451 + HERVH LTR ERV1 7149 7713 0 1354 186 114 67 chr3 142261707 142262137 -75775021 + LTR7 LTR ERV1 1 450 0 477 219 0 0 chr3 142262139 142262244 -75774914 - L1P LINE L1 -945 5201 5097 1941 151 10 3 chr3 142262300 142262599 -75774559 + AluJo SINE Alu 1 301 -11 1939 223 14 49 chr3 142262731 142263225 -75773933 - MLT1D LTR MaLR 0 505 29 1919 106 7 35 chr3 142263244 142263527 -75773631 + AluSc SINE Alu 1 275 -34 402 96 28 69 chr3 142263527 142263591 -75773567 + AluSc SINE Alu 251 308 -1 384 260 80 0 chr3 142263660 142263760 -75773398 - MIR SINE MIR -71 137 30 506 243 243 0 chr3 142263784 142263928 -75773230 + MER5A DNA MER1_type 9 187 -2 877 205 46 65 chr3 142264183 142264446 -75772712 + MIR SINE MIR 2 259 -3 186 383 0 0 chr3 142265071 142265152 -75772006 - L3 LINE CR1 -13 1564 1484 425 314 22 1 chr3 142266136 142266284 -75770874 + MIR SINE MIR 52 200 -62 2170 70 52 11 chr3 142266353 142266640 -75770518 - AluY SINE Alu -12 299 1 296 313 98 40 chr3 142266691 142266988 -75770170 + MER90 LTR ERV1 251 564 -50 1093 243 185 20 chr3 142267558 142267953 -75769205 - MLT1F LTR MaLR 0 542 83 267 314 74 40 chr3 142267959 142268134 -75769024 + MIR SINE MIR 61 241 -21 457 322 115 5 chr3 142268858 142269066 -75768092 - MIR SINE MIR 0 262 32 276 188 16 47 chr3 142270612 142270676 -75766482 - L2 LINE L2 -1 3312 3251 479 241 139 51 chr3 142271346 142271583 -75765575 + MIR SINE MIR 5 262 0 303 93 0 0 chr3 142271587 142271630 -75765528 + (TTA)n Simple_repeat Simple_repeat 3 45 0 923 246 113 30 chr3 142271872 142272259 -75764899 + L1ME3A LINE L1 5521 5949 -221 735 196 131 6 chr3 142272324 142272492 -75764666 - MER5A DNA MER1_type 0 189 1 317 272 240 0 chr3 142272506 142272631 -75764527 + L1ME3A LINE L1 5990 6144 -26 1975 93 0 4 chr3 142272637 142272906 -75764252 - AluY SINE Alu -9 302 35 28 29 0 0 chr3 142272908 142272943 -75764215 + AT_rich Low_complexity Low_complexity 1 35 0 440 313 145 9 chr3 142273316 142273543 -75763615 + MIR SINE MIR 2 259 -3 214 276 35 0 chr3 142274080 142274138 -75763020 - MIR SINE MIR -139 123 64 187 263 53 86 chr3 142274310 142274462 -75762696 - L2 LINE L2 -284 2988 2842 1877 161 10 13 chr3 142274964 142275263 -75761895 - AluJo SINE Alu -14 298 1 1987 148 0 37 chr3 142275442 142275766 -75761392 + AluJb SINE Alu 1 312 0 515 224 211 14 chr3 142277373 142277520 -75759638 + MER5A DNA MER1_type 14 189 0 267 170 0 0 chr3 142278746 142278793 -75758365 + LTR33 LTR ERVL 474 520 -1 2222 211 52 6 chr3 142279139 142279618 -75757540 - MLT1D LTR MaLR -2 503 3 259 358 61 20 chr3 142280290 142280438 -75756720 - MER5A DNA MER1_type -13 176 23 230 333 0 0 chr3 142280876 142280936 -75756222 - L2 LINE L2 -484 2830 2771 10939 152 19 14 chr3 142281755 142284803 -75752355 + L1MA3 LINE L1 3129 6194 -111 297 183 0 0 chr3 142285095 142285155 -75752003 + (CA)n Simple_repeat Simple_repeat 1 60 0 1958 112 86 0 chr3 142285501 142285779 -75751379 + AluSp SINE Alu 1 302 -11 658 177 196 0 chr3 142285868 142286026 -75751132 - MER5A DNA MER1_type 0 189 1 339 305 109 40 chr3 142287290 142287464 -75749694 + MIR3 SINE MIR 20 205 -3 188 263 79 79 chr3 142289758 142289834 -75747324 - L2 LINE L2 -47 3225 3150 269 213 46 149 chr3 142290481 142290592 -75746566 - L2 LINE L2 -43 3270 3182 1961 130 23 52 chr3 142290592 142290939 -75746219 + MER1B DNA MER1_type 1 337 0 269 213 46 149 chr3 142290939 142291001 -75746157 - L2 LINE L2 -131 3182 3115 2362 254 243 16 chr3 142291065 142292388 -75744770 - L2 LINE L2 -177 3136 1509 437 335 18 18 chr3 142292393 142292560 -75744598 + MER5B DNA MER1_type 4 170 -8 395 284 241 32 chr3 142292606 142292888 -75744270 - L2 LINE L2 -1865 1449 1109 240 175 70 0 chr3 142294280 142294337 -75742821 - MER116 DNA Mariner -1 79 19 511 102 0 11 chr3 142294385 142294473 -75742685 - L1MA7 LINE L1 -5 6286 6200 188 270 138 57 chr3 142294641 142294800 -75742358 + L2 LINE L2 3139 3310 -3 4312 38 8 0 chr3 142295836 142296357 -75740801 - L1PA6 LINE L1 -3 6151 5627 1028 246 65 32 chr3 142296457 142296851 -75740307 - MLT1H LTR MaLR -99 450 2 290 253 10 0 chr3 142298043 142298142 -75739016 + GA-rich Low_complexity Low_complexity 4 103 0 744 142 86 146 chr3 142298143 142298376 -75738782 - MER20 DNA MER1_type 0 219 1 222 209 23 0 chr3 142298386 142298429 -75738729 - MER5A DNA MER1_type -9 180 137 309 185 0 25 chr3 142298435 142298516 -75738642 - ORSL DNA AcHobo -59 216 138 627 253 22 60 chr3 142298627 142298995 -75738163 - L1MC5 LINE L1 -197 7764 7411 364 148 0 191 chr3 142299062 142299251 -75737907 - L1MC5 LINE L1 -1000 6961 6809 304 311 50 0 chr3 142299399 142299560 -75737598 - L1MC4a LINE L1 -1573 6235 6067 232 289 49 0 chr3 142299752 142299894 -75737264 - L1 LINE L1 -1541 4605 4457 2052 141 0 0 chr3 142300011 142300333 -75736825 - AluSx SINE Alu 0 312 20 896 121 8 0 chr3 142300525 142300649 -75736509 - FLAM_C SINE Alu -18 125 1 376 211 58 29 chr3 142300931 142301035 -75736123 - MIR SINE MIR -46 216 110 213 346 12 12 chr3 142302117 142302198 -75734960 - MER5A DNA MER1_type -108 81 1 813 194 42 0 chr3 142302522 142302687 -75734471 - Tigger7 DNA MER2_type 0 2487 2316 12446 133 25 16 chr3 142302694 142303827 -75733331 + Tigger1 DNA MER2_type 22 1183 -1235 2443 90 0 3 chr3 142303827 142304137 -75733021 + AluSg SINE Alu 2 310 0 12446 133 25 16 chr3 142304137 142305121 -75732037 + Tigger1 DNA MER2_type 1183 2157 -261 1529 101 5 0 chr3 142305131 142305349 -75731809 - THE1A LTR MaLR 0 355 137 5373 38 0 3 chr3 142305350 142306060 -75731098 - L1P LINE L1 -2534 3612 2905 1186 60 0 0 chr3 142306060 142306211 -75730947 - THE1A LTR MaLR -204 151 1 * 1472 123 7 74 chr3 142306211 142306367 -75730791 + Tigger1 DNA MER2_type 2155 2285 -133 2009 151 0 3 chr3 142306367 142306658 -75730500 - AluSx SINE Alu -22 290 1 1472 123 7 74 chr3 142306658 142306784 -75730374 + Tigger1 DNA MER2_type 2285 2418 0 309 169 0 0 chr3 142306806 142306865 -75730293 + CT-rich Low_complexity Low_complexity 2 60 0 805 73 0 0 chr3 142306867 142306977 -75730181 - Tigger7 DNA MER2_type -231 2256 2147 1171 174 97 4 chr3 142306980 142307227 -75729931 + Tigger7 DNA MER2_type 77 346 -204 363 250 0 0 chr3 142307224 142307304 -75729854 - Tigger7 DNA MER2_type -2407 80 1 * 886 227 5 0 chr3 142307451 142307654 -75729504 - MER3 DNA MER1_type 0 209 6 274 212 0 47 chr3 142307665 142307750 -75729408 - HsTC2 DNA Tc2 -1817 81 1 515 261 50 0 chr3 142308488 142308607 -75728551 - MIR SINE MIR -81 181 57 * 965 300 21 24 chr3 142308599 142308936 -75728222 + L2 LINE L2 1848 2183 -1131 619 219 7 34 chr3 142308936 142309082 -75728076 - MER20 DNA MER1_type 0 219 78 1266 215 210 5 chr3 142309099 142309471 -75727687 + L2 LINE L2 2226 2673 -641 529 333 48 56 chr3 142309522 142309984 -75727174 + L1M4 LINE L1 2674 3131 -3015 250 299 11 0 chr3 142310141 142310228 -75726930 - L1ME LINE L1 -449 5672 5585 865 189 0 6 chr3 142311611 142311786 -75725372 - MER3 DNA MER1_type 0 209 36 1038 136 5 48 chr3 142311889 142311995 -75725163 + L1PBa LINE L1 2 96 -6767 2465 4 0 0 chr3 142311995 142312261 -75724897 + AluYa5 SINE Alu 34 299 -12 1038 136 5 48 chr3 142312261 142312360 -75724798 + L1PBa LINE L1 96 198 -6665 3529 118 4 11 chr3 142312360 142313380 -75723778 + L1PBa LINE L1 632 1793 -5070 6930 67 29 0 chr3 142313485 142314412 -75722746 - L1PA8 LINE L1 -14 6158 5225 195 100 0 0 chr3 142314517 142314547 -75722611 + (TATATG)n Simple_repeat Simple_repeat 3 32 0 225 361 39 8 chr3 142315587 142315717 -75721441 - MIR SINE MIR -109 153 20 279 325 0 0 chr3 142315726 142315809 -75721349 - MIR SINE MIR 0 262 180 897 292 136 18 chr3 142315832 142316215 -75720943 - MLT1J2 LTR MaLR -22 428 1 490 301 44 0 chr3 142316215 142316351 -75720807 - MIR SINE MIR -99 163 22 505 180 22 0 chr3 142316367 142316456 -75720702 + MER3 DNA MER1_type 8 98 -111 707 163 41 0 chr3 142316851 142316998 -75720160 + L1MB3 LINE L1 6028 6180 -3 21 36 0 0 chr3 142317810 142317838 -75719320 + AT_rich Low_complexity Low_complexity 1 28 0 32 43 0 0 chr3 142318813 142318859 -75718299 + AT_rich Low_complexity Low_complexity 1 46 0 2138 106 24 0 chr3 142319099 142319219 -75717939 + AluSc SINE Alu 1 117 -192 351 0 0 0 chr3 142319219 142319258 -75717900 + (CA)n Simple_repeat Simple_repeat 2 40 0 2138 106 24 0 chr3 142319258 142319430 -75717728 + AluSc SINE Alu 117 300 -9 1305 196 41 74 chr3 142319510 142319994 -75717164 - LTR37B LTR ERV1 0 468 1 756 251 10 44 chr3 142320191 142320394 -75716764 + L2 LINE L2 3118 3313 0 219 114 0 0 chr3 142320395 142320430 -75716728 + (TGGA)n Simple_repeat Simple_repeat 3 37 0 1001 171 12 0 chr3 142321629 142321793 -75715365 - MER5A DNA MER1_type -9 180 15 677 250 58 0 chr3 142322019 142322191 -75714967 - MER20 DNA MER1_type -4 215 34 1510 141 36 11 chr3 142322437 142322713 -75714445 + L1PA13 LINE L1 5878 6160 -3 783 207 11 17 chr3 142322802 142322981 -75714177 + MER5B DNA MER1_type 1 178 0 404 314 102 51 chr3 142323205 142323515 -75713643 - L2 LINE L2 -362 2952 2622 2311 62 13 13 chr3 142323515 142323822 -75713336 + AluY SINE Alu 1 307 -4 404 314 102 51 chr3 142323822 142323845 -75713313 - L2 LINE L2 -692 2622 2602 219 303 57 51 chr3 142323893 142324068 -75713090 - L2 LINE L2 -831 2483 2308 454 250 0 0 chr3 142324071 142324159 -75712999 - MER81 DNA DNA -21 93 6 245 305 37 0 chr3 142324163 142324245 -75712913 - L2 LINE L2 -1019 2295 2211 306 326 104 7 chr3 142325035 142325170 -75711988 - MIR3 SINE MIR -28 180 33 275 337 148 15 chr3 142325193 142325395 -75711763 - MIR SINE MIR -16 246 18 335 260 110 27 chr3 142325878 142326024 -75711134 - MIR SINE MIR -46 216 59 2526 30 40 0 chr3 142326189 142326487 -75710671 - AluY SINE Alu -1 310 1 1685 215 133 75 chr3 142326581 142327182 -75709976 + MLT1E1 LTR MaLR 17 652 -2 331 343 51 0 chr3 142327228 142327403 -75709755 - MIR SINE MIR -40 222 39 257 257 0 43 chr3 142328124 142328194 -75708964 + MIR SINE MIR 108 174 -88 180 111 0 0 chr3 142328195 142328222 -75708936 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 266 377 92 23 chr3 142328411 142328541 -75708617 - L2 LINE L2 0 3272 3134 1674 192 3 3 chr3 142328586 142328872 -75708286 - AluJb SINE Alu -26 286 1 321 279 271 0 chr3 142329227 142329356 -75707802 - MIR SINE MIR -79 183 20 1182 81 29 6 chr3 142330218 142330392 -75706766 - L1MA1 LINE L1 0 6302 6125 204 319 88 11 chr3 142331049 142331140 -75706018 + MIR SINE MIR 50 147 -115 368 281 158 0 chr3 142331379 142331525 -75705633 + MIR SINE MIR 82 250 -12 302 324 48 19 chr3 142332226 142332331 -75704827 - MIR SINE MIR -85 123 16 522 168 228 102 chr3 142332440 142332516 -75704642 + MER5A DNA MER1_type 2 67 -122 2239 112 0 0 chr3 142332516 142332812 -75704346 + AluY SINE Alu 1 296 -15 522 168 228 102 chr3 142332812 142332902 -75704256 + MER5A DNA MER1_type 67 189 0 2655 99 8 8 chr3 142332958 142333333 -75703825 - THE1C LTR MaLR 0 375 1 2345 97 34 11 chr3 142333333 142333683 -75703475 - THE1C-int LTR MaLR 0 1580 1223 2551 97 3 11 chr3 142333685 142334055 -75703103 - THE1C-int LTR MaLR -1213 367 1 2503 110 13 8 chr3 142334055 142334428 -75702730 - THE1C LTR MaLR 0 375 1 14667 184 32 7 chr3 142334796 142339557 -75697601 - L1PB1 LINE L1 -1 6866 1987 583 221 0 7 chr3 142339665 142339801 -75697357 + AluYa8 SINE Alu 164 298 -12 180 219 156 0 chr3 142339887 142339951 -75697207 - L2 LINE L2 -301 2971 2898 664 219 84 47 chr3 142340313 142340528 -75696630 - MER58A DNA MER1_type 0 224 2 786 215 33 56 chr3 142340712 142340982 -75696176 + L1MC5 LINE L1 7639 7902 -59 618 210 32 0 chr3 142343008 142343132 -75694026 - FLAM_C SINE Alu -5 128 1 1817 150 3 45 chr3 142343429 142343743 -75693415 + AluJo SINE Alu 2 302 -10 1804 169 57 21 chr3 142343821 142344193 -75692965 - L1MA6 LINE L1 0 6300 5916 6322 153 58 22 chr3 142344293 142346288 -75690870 - L1MA6 LINE L1 -285 6015 3953 1680 236 85 16 chr3 142346540 142347073 -75690085 - MLT1F1 LTR MaLR 0 567 1 742 237 72 12 chr3 142347751 142348000 -75689158 + L1MC4a LINE L1 6311 6574 -1234 26 30 0 0 chr3 142348828 142348861 -75688297 + AT_rich Low_complexity Low_complexity 1 33 0 225 0 0 0 chr3 142349152 142349177 -75687981 + (TG)n Simple_repeat Simple_repeat 2 26 0 258 32 0 0 chr3 142349458 142349489 -75687669 + (TG)n Simple_repeat Simple_repeat 2 32 0 399 213 126 0 chr3 142349728 142349855 -75687303 - L1ME4a LINE L1 -49 6072 5930 180 152 0 0 chr3 142350635 142350668 -75686490 + T-rich Low_complexity Low_complexity 1 33 0 2066 129 137 34 chr3 142350898 142351286 -75685872 - MSTA LTR MaLR 0 428 1 247 98 0 24 chr3 142351394 142351435 -75685723 + L1MA6 LINE L1 5743 5782 -523 282 116 0 0 chr3 142351437 142351480 -75685678 + (TG)n Simple_repeat Simple_repeat 1 43 0 2400 154 51 12 chr3 142351508 142352000 -75685158 + L1MA6 LINE L1 5789 6299 -1 937 183 6 29 chr3 142352851 142353026 -75684132 + FRAM SINE Alu 1 170 -6 269 281 12 12 chr3 142353611 142353693 -75683465 + MARNA DNA Mariner 323 404 -182 1576 189 0 21 chr3 142356775 142357091 -75680067 - AluJo SINE Alu 0 312 3 432 272 224 15 chr3 142357831 142358371 -75678787 + L1M4 LINE L1 4029 4681 -1465 5658 125 85 34 chr3 142358426 142359482 -75677676 - Tigger1 DNA MER2_type 0 2418 1309 378 261 94 36 chr3 142363077 142363215 -75673943 + MER5B DNA MER1_type 1 146 -32 422 294 141 9 chr3 142364148 142364347 -75672811 - MIR SINE MIR -12 250 31 316 216 134 0 chr3 142364995 142365092 -75672066 - MLT1D LTR MaLR -135 370 261 1090 152 0 11 chr3 142365618 142365796 -75671362 + AluSg/x SINE Alu 136 311 -1 1505 181 44 0 chr3 142365805 142366054 -75671104 + AluJo SINE Alu 3 262 -50 857 285 34 8 chr3 142366215 142366450 -75670708 - MIR SINE MIR -13 249 9 24 77 0 0 chr3 142366568 142366620 -75670538 + AT_rich Low_complexity Low_complexity 1 52 0 3225 190 23 21 chr3 142367699 142368310 -75668848 + LTR39 LTR ERV1 172 783 0 469 218 8 48 chr3 142368310 142368431 -75668727 + MLT1F LTR MaLR 427 542 0 256 342 135 0 chr3 142368516 142368627 -75668531 - MIR3 SINE MIR -49 159 34 27 0 0 0 chr3 142369729 142369756 -75667402 + AT_rich Low_complexity Low_complexity 1 27 0 1114 207 105 39 chr3 142370194 142370557 -75666601 - MER69 DNA AcHobo 0 2526 2140 7092 108 16 20 chr3 142370559 142370801 -75666357 - L1MA3 LINE L1 0 7724 7482 1850 124 8 0 chr3 142370801 142371059 -75666099 - AluSx SINE Alu -13 299 40 7092 108 16 20 chr3 142371059 142372051 -75665107 - L1MA3 LINE L1 -242 7482 6499 * 20987 147 24 63 chr3 142372046 142373977 -75663181 - L1MA3 LINE L1 -1994 5571 3566 1782 169 10 13 chr3 142373977 142374278 -75662880 - AluJo SINE Alu -12 300 1 20987 147 24 63 chr3 142374278 142378090 -75659068 - L1MA3 LINE L1 -3999 3566 24 354 155 0 0 chr3 142378108 142378166 -75658992 - Alu SINE Alu -5 297 240 5091 203 30 14 chr3 142378269 142379281 -75657877 - L1M1 LINE L1 -6516 1049 22 1713 157 52 17 chr3 142379297 142379584 -75657574 - AluJo SINE Alu -15 297 1 396 267 82 0 chr3 142379586 142379721 -75657437 - MER69 DNA AcHobo -379 2147 2002 596 289 26 26 chr3 142379851 142380079 -75657079 + MER31-int LTR ERV1 3832 4059 -877 322 167 28 0 chr3 142380125 142380197 -75656961 + LTR37B LTR ERV1 395 468 0 237 303 0 30 chr3 142380685 142380751 -75656407 + L2 LINE L2 3209 3272 0 1401 279 75 10 chr3 142380879 142381266 -75655892 - LTR16C LTR ERVL 0 491 80 2403 85 0 16 chr3 142381587 142381903 -75655255 + AluY SINE Alu 1 311 0 1016 197 62 0 chr3 142382485 142382663 -75654495 - MER5A DNA MER1_type 0 189 1 2114 142 3 0 chr3 142383144 142383446 -75653712 - AluJb SINE Alu 0 312 10 292 229 71 0 chr3 142383561 142383631 -75653527 - MER105 DNA DNA -129 75 1 832 93 17 0 chr3 142383695 142383813 -75653345 - AluSg/x SINE Alu -16 293 174 466 253 0 0 chr3 142384425 142384512 -75652646 + MIR SINE MIR 8 94 -168 808 233 45 45 chr3 142384528 142384730 -75652428 - MER63A DNA MER1_type -8 202 1 * 2023 263 84 47 chr3 142384729 142384898 -75652260 - MER115 DNA AcHobo -3 690 529 713 204 15 8 chr3 142384898 142385030 -75652128 - FLAM_A SINE Alu 0 133 1 2023 263 84 47 chr3 142385030 142385525 -75651633 - MER115 DNA AcHobo -164 529 1 516 205 72 48 chr3 142385525 142385691 -75651467 + MIR SINE MIR 88 257 -5 484 252 89 7 chr3 142385730 142385865 -75651293 + MIR3 SINE MIR 30 175 -33 1350 217 82 91 chr3 142386284 142386856 -75650302 - MLT1F1 LTR MaLR 0 567 1 1102 250 120 51 chr3 142387452 142387944 -75649214 - MLT1H LTR MaLR -12 537 12 1801 188 85 2 chr3 142388290 142388713 -75648445 + MER89 LTR ERV1 1 559 0 601 249 126 12 chr3 142388738 142389066 -75648092 - L2 LINE L2 -689 2625 2182 293 304 35 26 chr3 142389078 142389193 -75647965 - L2 LINE L2 -3 3269 3154 459 139 0 38 chr3 142389196 142389275 -75647883 + L1MB1 LINE L1 6089 6164 -4 472 275 78 51 chr3 142389378 142389717 -75647441 - L2 LINE L2 -237 3035 2698 262 360 36 22 chr3 142389711 142389850 -75647308 - MER5A DNA MER1_type -48 141 1 * 2200 99 3 43 chr3 142389944 142390268 -75646890 + AluY SINE Alu 1 311 0 330 271 42 10 chr3 142390880 142390976 -75646182 - L2 LINE L2 -701 2613 2515 456 288 102 38 chr3 142391272 142391508 -75645650 - MER102a DNA MER1_type -36 294 44 283 265 48 12 chr3 142391521 142391604 -75645554 - MIR SINE MIR -65 197 112 187 273 127 0 chr3 142391639 142391694 -75645464 + MIR3 SINE MIR 115 176 -32 275 188 129 0 chr3 142391824 142391909 -75645249 + L1ME LINE L1 5335 5430 -740 292 241 95 62 chr3 142392194 142392468 -75644690 - MER97c DNA MER1_type? -40 1050 768 6688 125 6 8 chr3 142392485 142392841 -75644317 - L1PB1 LINE L1 0 6867 6512 197 62 0 31 chr3 142392841 142392873 -75644285 + (TATG)n Simple_repeat Simple_repeat 2 32 0 6688 125 6 8 chr3 142392873 142393923 -75643235 - L1PB1 LINE L1 -355 6512 5469 3182 76 7 47 chr3 142393923 142394371 -75642787 - MLT2A1 LTR ERVL -7 437 8 12515 175 42 17 chr3 142394372 142395644 -75641514 - L1PB1 LINE L1 -1386 5476 4237 3472 16 0 0 chr3 142395644 142396016 -75641142 - L1PA2 LINE L1 -2 6153 5782 12515 175 42 17 chr3 142396016 142396264 -75640894 - L1PB1 LINE L1 -2625 4237 3997 243 0 0 0 chr3 142396264 142396291 -75640867 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 12515 175 42 17 chr3 142396291 142398363 -75638795 - L1PB1 LINE L1 -2865 3997 1789 480 203 209 27 chr3 142399464 142399612 -75637546 - MER5A DNA MER1_type 0 189 15 1051 208 12 33 chr3 142401052 142401078 -75636080 - MIR SINE MIR 0 262 237 2192 186 16 5 chr3 142401078 142401448 -75635710 - MLT1A2 LTR MaLR 0 374 1 1051 208 12 33 chr3 142401448 142401661 -75635497 - MIR SINE MIR -25 237 28 455 322 91 0 chr3 142402022 142402221 -75634937 - MER102b DNA MER1_type -42 299 83 2147 92 10 17 chr3 142402253 142402547 -75634611 + AluSx SINE Alu 1 292 -20 6235 192 53 17 chr3 142402677 142404014 -75633144 - Charlie1a DNA MER1_type -36 1419 35 2252 176 98 106 chr3 142404052 142404683 -75632475 - MLT1E2 LTR MaLR 0 626 1 375 264 178 12 chr3 142405329 142405492 -75631666 + MIR SINE MIR 37 226 -36 458 319 140 13 chr3 142405606 142405835 -75631323 - LTR16A LTR ERVL -168 282 25 2015 100 61 0 chr3 142405941 142406221 -75630937 - AluSq SINE Alu -14 299 3 2295 101 0 7 chr3 142406221 142406529 -75630629 - AluSx SINE Alu -6 306 1 989 127 0 7 chr3 142406529 142406671 -75630487 - AluJo SINE Alu -171 141 1 423 340 62 25 chr3 142407602 142407926 -75629232 + L2 LINE L2 2551 2886 -428 252 333 10 10 chr3 142407958 142408043 -75629115 + L2 LINE L2 2966 3053 -219 2444 100 0 0 chr3 142408043 142408353 -75628805 + AluSx SINE Alu 1 310 -2 252 333 10 10 chr3 142408353 142408366 -75628792 + L2 LINE L2 3052 3064 -208 1906 77 85 8 chr3 142408637 142408897 -75628261 + AluSc SINE Alu 30 309 0 598 111 83 104 chr3 142409122 142409266 -75627892 + L1MB5 LINE L1 6034 6174 0 471 319 30 0 chr3 142409835 142410004 -75627154 - HsTC2 DNA Tc2 -1014 884 711 328 106 59 0 chr3 142410265 142410350 -75626808 + (TA)n Simple_repeat Simple_repeat 2 91 0 458 253 63 13 chr3 142411109 142411267 -75625891 + MIR SINE MIR 97 262 0 927 273 62 77 chr3 142411359 142411777 -75625381 + MLT1K LTR MaLR 177 588 0 296 271 279 0 chr3 142413048 142413170 -75623988 + MIR SINE MIR 74 229 -33 618 278 52 28 chr3 142413765 142413977 -75623181 - MIR SINE MIR 0 262 46 584 282 52 33 chr3 142414270 142414483 -75622675 - MIR SINE MIR 0 262 46 372 173 29 67 chr3 142414756 142414860 -75622298 - L1MB7 LINE L1 -17 6167 6068 21 0 0 0 chr3 142415033 142415054 -75622104 + AT_rich Low_complexity Low_complexity 1 21 0 715 210 164 5 chr3 142416405 142416619 -75620539 + MLT1G1 LTR MaLR 17 264 -331 194 302 57 0 chr3 142416671 142416724 -75620434 + L2 LINE L2 3137 3192 -80 249 291 76 13 chr3 142416762 142416841 -75620317 + MIR SINE MIR 29 112 -150 473 111 0 0 chr3 142416841 142416904 -75620254 - AluSp/q SINE Alu -39 274 212 303 286 200 7 chr3 142417222 142417362 -75619796 - MIR SINE MIR -73 189 23 816 116 0 0 chr3 142417485 142417597 -75619561 + AluY SINE Alu 1 112 -199 452 35 0 0 chr3 142417597 142417655 -75619503 + AluY SINE Alu 241 298 -12 1217 206 119 63 chr3 142417747 142418253 -75618905 - L1ME1 LINE L1 -6 6160 5627 695 194 14 0 chr3 142418256 142418414 -75618744 - L1P5 LINE L1 -661 5493 5324 646 266 92 6 chr3 142418427 142418600 -75618558 - MIR SINE MIR -74 188 1 2374 51 34 0 chr3 142418801 142419097 -75618061 + AluY SINE Alu 1 306 -5 245 206 63 0 chr3 142420325 142420388 -75616770 + MER104 DNA Tc2 43 109 -71 * 449 144 29 29 chr3 142420379 142420483 -75616675 + MER104 DNA Tc2 43 146 -34 215 353 15 0 chr3 142420571 142420639 -75616519 - MIR SINE MIR -188 74 6 2315 171 36 51 chr3 142420645 142421119 -75616039 + MLT1C LTR MaLR 1 467 0 508 150 321 0 chr3 142421824 142421964 -75615194 + MER3 DNA MER1_type 2 186 -23 415 199 205 53 chr3 142422074 142422225 -75614933 + MER5B DNA MER1_type 2 175 -3 394 237 101 29 chr3 142422697 142422904 -75614254 + LTR33 LTR ERVL 245 466 -55 565 290 87 6 chr3 142423138 142423321 -75613837 - MIR SINE MIR -1 261 64 1616 161 4 25 chr3 142424785 142425065 -75612093 + AluJo SINE Alu 9 282 -30 268 331 68 7 chr3 142425603 142425751 -75611407 - MER103 DNA DNA -1 165 9 27 0 0 0 chr3 142425958 142425985 -75611173 + AT_rich Low_complexity Low_complexity 1 27 0 2250 85 24 3 chr3 142426515 142426809 -75610349 + AluSc SINE Alu 3 302 -7 1786 87 0 4 chr3 142427290 142427520 -75609638 - AluSc SINE Alu -4 305 77 220 356 87 9 chr3 142428125 142428240 -75608918 - L2 LINE L2 0 3272 3149 258 265 76 47 chr3 142428573 142428759 -75608399 + L3 LINE CR1 1317 1576 -1 188 61 61 0 chr3 142428798 142428831 -75608327 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1490 218 129 20 chr3 142429004 142429017 -75608141 + MER74A LTR ERVL 3 13 -545 1535 145 0 0 chr3 142429017 142429244 -75607914 - AluSq SINE Alu -1 312 86 1490 218 129 20 chr3 142429244 142429720 -75607438 + MER74A LTR ERVL 13 545 -13 397 336 28 0 chr3 142429902 142430045 -75607113 - MIR SINE MIR -83 179 33 1711 268 161 12 chr3 142430461 142431388 -75605770 + L2 LINE L2 2164 3216 -97 260 200 0 0 chr3 142432150 142432200 -75604958 + MLT1L LTR MaLR 336 385 -230 1933 223 59 13 chr3 142432220 142432677 -75604481 + MLT2B1 LTR ERVL 1 478 -42 207 204 0 0 chr3 142432679 142432728 -75604430 + (TA)n Simple_repeat Simple_repeat 2 50 0 692 315 104 24 chr3 142432747 142433335 -75603823 + L1ME3 LINE L1 2676 3310 -2836 512 314 49 18 chr3 142433476 142433862 -75603296 + L1ME3 LINE L1 3520 3917 -2229 22 56 0 0 chr3 142433912 142433948 -75603210 + AT_rich Low_complexity Low_complexity 1 36 0 1957 14 0 0 chr3 142433950 142434167 -75602991 + AluY SINE Alu 95 311 0 23 33 0 0 chr3 142434408 142434438 -75602720 + AT_rich Low_complexity Low_complexity 1 30 0 4882 202 50 6 chr3 142434539 142436299 -75600859 - L1MD1 LINE L1 -1 6635 4802 5565 149 10 11 chr3 142436312 142437632 -75599526 - L1MA6 LINE L1 -4 6296 4971 676 202 9 0 chr3 142437730 142437844 -75599314 - FLAM_A SINE Alu -18 115 1 1548 237 24 2 chr3 142437885 142438307 -75598851 - L1MD1 LINE L1 -1853 4687 4257 3794 244 50 43 chr3 142438434 142440006 -75597152 - L1MD1 LINE L1 -2299 4241 2659 881 212 101 27 chr3 142440009 142440373 -75596785 - MSTC LTR MaLR -2 426 1 363 208 58 12 chr3 142440373 142440489 -75596669 - L1MD1 LINE L1 -3890 2650 2544 5243 216 71 29 chr3 142440600 142441752 -75595406 - L1MD1 LINE L1 -4329 2211 865 218 56 28 0 chr3 142441752 142441788 -75595370 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5243 216 71 29 chr3 142441788 142442681 -75594477 - L1MD1 LINE L1 -5675 865 11 232 310 30 0 chr3 142442802 142442902 -75594256 + L1ME3 LINE L1 4552 4654 -1492 37 23 0 0 chr3 142442985 142443029 -75594129 + AT_rich Low_complexity Low_complexity 1 44 0 234 189 0 0 chr3 142443056 142443109 -75594049 + L1ME3 LINE L1 4776 4828 -1318 543 289 54 60 chr3 142443538 142444171 -75592987 + L1ME3 LINE L1 5264 5826 -336 1210 237 140 55 chr3 142444742 142445249 -75591909 + MER119 DNA MER1_type 10 559 -24 2689 88 6 0 chr3 142446734 142447087 -75590071 + THE1A LTR MaLR 1 355 0 11890 87 8 1 chr3 142447087 142448654 -75588504 + THE1A-int LTR MaLR 1 1579 -1 2638 90 3 0 chr3 142448655 142449009 -75588149 + THE1A LTR MaLR 1 355 0 466 317 36 0 chr3 142450246 142450413 -75586745 - MIR SINE MIR -39 223 51 876 209 0 0 chr3 142451200 142451358 -75585800 - FRAM SINE Alu -7 169 12 434 313 48 0 chr3 142452314 142452461 -75584697 - MIR SINE MIR -27 235 82 331 373 0 0 chr3 142452476 142452594 -75584564 - L2 LINE L2 0 3313 3196 329 299 102 0 chr3 142453685 142453812 -75583346 + L1ME4a LINE L1 5519 5658 -463 898 247 62 4 chr3 142453911 142454154 -75583004 - MIR SINE MIR -5 257 1 329 263 76 80 chr3 142454166 142454390 -75582768 + L1ME4a LINE L1 5833 6055 -66 322 352 21 5 chr3 142454491 142454684 -75582474 + L1ME LINE L1 5458 5653 -468 1655 220 72 16 chr3 142455208 142455653 -75581505 + MER110 LTR ERV1 1 470 -21 742 229 5 73 chr3 142456080 142456272 -75580886 + MIR SINE MIR 9 187 -75 731 228 0 0 chr3 142456446 142456595 -75580563 + MER63A DNA MER1_type 61 209 -1 216 67 0 0 chr3 142457241 142457271 -75579887 + (TG)n Simple_repeat Simple_repeat 2 31 0 21 0 0 0 chr3 142457777 142457798 -75579360 + AT_rich Low_complexity Low_complexity 1 21 0 272 315 11 11 chr3 142461043 142461135 -75576023 + L2 LINE L2 3161 3252 -61 287 284 53 65 chr3 142461640 142461809 -75575349 + L2 LINE L2 2159 2325 -989 348 188 0 0 chr3 142461810 142461879 -75575279 + (TA)n Simple_repeat Simple_repeat 2 70 0 259 289 0 0 chr3 142461888 142461978 -75575180 + L1MC4 LINE L1 6614 6703 -1339 236 149 21 0 chr3 142461988 142462035 -75575123 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 207 100 0 0 chr3 142462065 142462095 -75575063 + (CATA)n Simple_repeat Simple_repeat 3 32 0 306 0 0 0 chr3 142462116 142462150 -75575008 + (TG)n Simple_repeat Simple_repeat 2 35 0 536 336 52 46 chr3 142462150 142462629 -75574529 + L2 LINE L2 2329 2810 -504 284 294 88 0 chr3 142462692 142462793 -75574365 + MER5B DNA MER1_type 30 129 -49 596 335 10 5 chr3 142462803 142462997 -75574161 + L2 LINE L2 2849 3043 -270 2144 103 0 23 chr3 142463465 142463766 -75573392 - AluSc SINE Alu -15 294 1 4478 156 8 1 chr3 142464531 142465248 -75571910 + MER72 LTR ERV1 1 722 0 208 337 63 0 chr3 142465257 142465352 -75571806 + MIR3 SINE MIR 90 190 -18 1291 222 61 33 chr3 142467069 142467429 -75569729 - MLT1A2 LTR MaLR -4 370 1 189 211 0 26 chr3 142467815 142467853 -75569305 - L2 LINE L2 -221 3051 3015 452 18 18 0 chr3 142469121 142469178 -75567980 + (TG)n Simple_repeat Simple_repeat 2 59 0 1360 164 40 4 chr3 142469207 142469457 -75567701 - L1PA16 LINE L1 -2 6164 5906 211 296 28 14 chr3 142469615 142469686 -75567472 + L2 LINE L2 3242 3313 0 209 105 0 26 chr3 142470554 142470592 -75566566 + (TA)n Simple_repeat Simple_repeat 1 37 0 324 292 0 11 chr3 142470594 142470683 -75566475 + L1MC4 LINE L1 6616 6703 -1339 21 0 0 0 chr3 142470683 142470704 -75566454 + AT_rich Low_complexity Low_complexity 1 21 0 454 289 81 41 chr3 142472331 142472528 -75564630 + MIR SINE MIR 31 235 -27 205 175 25 0 chr3 142472504 142472544 -75564614 + L2 LINE L2 3216 3256 -16 * 351 284 88 0 chr3 142472824 142472926 -75564232 - L2 LINE L2 -21 3292 3182 329 376 7 13 chr3 142472932 142473081 -75564077 + L1MC/D LINE L1 5682 5829 -1979 1187 231 51 7 chr3 142473753 142474048 -75563110 + MLT1H LTR MaLR 11 318 -231 655 206 35 0 chr3 142474078 142474219 -75562939 + MLT1H LTR MaLR 381 526 -23 982 251 108 44 chr3 142474713 142475192 -75561966 - MLT1G1 LTR MaLR -66 501 3 2589 62 0 0 chr3 142475491 142475796 -75561362 + AluY SINE Alu 1 305 -6 319 301 101 18 chr3 142476563 142476849 -75560309 - L1MC4a LINE L1 -1888 5920 5611 34 0 0 0 chr3 142476967 142477001 -75560157 + AT_rich Low_complexity Low_complexity 1 34 0 252 289 145 0 chr3 142477044 142477120 -75560038 + L2 LINE L2 3195 3281 -32 207 0 0 0 chr3 142477142 142477165 -75559993 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 1479 215 108 16 chr3 142477177 142477752 -75559406 + L1MCc LINE L1 1047 1702 -4926 1354 219 49 49 chr3 142478276 142478727 -75558431 + MLT1D LTR MaLR 54 504 -1 192 257 0 0 chr3 142479186 142479256 -75557902 + GA-rich Low_complexity Low_complexity 3 72 0 3687 173 47 117 chr3 142479284 142480704 -75556454 + L1MA10 LINE L1 4999 6333 -1 431 263 101 39 chr3 142481076 142481255 -75555903 - MIR SINE MIR -7 255 66 250 357 131 57 chr3 142481945 142482242 -75554916 - L2 LINE L2 0 3272 2954 208 222 41 6 chr3 142482700 142482871 -75554287 + (TA)n Simple_repeat Simple_repeat 1 177 0 876 293 92 13 chr3 142483459 142483838 -75553320 - MLT1I LTR MaLR 0 409 1 2882 3 0 0 chr3 142483892 142484223 -75552935 - AluYa5 SINE Alu 0 331 1 2453 208 50 8 chr3 142484905 142485424 -75551734 - MER87 LTR ERV1 0 541 1 601 196 0 3 chr3 142486190 142486321 -75550837 - L1ME1 LINE L1 -2 6332 6046 653 278 52 85 chr3 142486462 142486850 -75550308 - L2 LINE L2 -164 3149 2776 553 213 178 0 chr3 142487840 142487990 -75549168 + MER5A DNA MER1_type 6 186 -3 243 301 147 14 chr3 142488016 142488138 -75549020 - MIR SINE MIR -70 192 47 2182 136 0 0 chr3 142488138 142488440 -75548718 + AluSg SINE Alu 1 302 -8 243 301 147 14 chr3 142488440 142488460 -75548698 - MIR SINE MIR -215 47 31 408 104 0 0 chr3 142488780 142488847 -75548311 + (CA)n Simple_repeat Simple_repeat 2 68 0 405 281 44 22 chr3 142489279 142489414 -75547744 + MIR SINE MIR 29 166 -96 1245 273 78 12 chr3 142489457 142489879 -75547279 - LTR16A LTR ERVL 0 450 1 274 275 50 0 chr3 142490059 142490139 -75547019 - MIR SINE MIR -70 192 109 387 224 26 26 chr3 142490547 142490663 -75546495 - LTR67 LTR ERVL -3 554 439 2210 116 0 10 chr3 142492146 142492457 -75544701 - AluSg SINE Alu -2 308 1 385 272 95 19 chr3 142492510 142492668 -75544490 - MIR SINE MIR -6 256 87 199 220 34 34 chr3 142494898 142494957 -75542201 + L2 LINE L2 3254 3312 -1 518 314 84 42 chr3 142495957 142495999 -75541159 - L1ME4a LINE L1 0 6121 6082 2096 144 0 0 chr3 142495999 142496304 -75540854 - AluSx SINE Alu -7 305 1 518 314 84 42 chr3 142496304 142496714 -75540444 - L1ME4a LINE L1 -39 6082 5650 331 179 77 13 chr3 142496736 142496814 -75540344 + MLT1L LTR MaLR 7 89 -526 564 298 65 22 chr3 142496877 142497152 -75540006 + MLT1L LTR MaLR 175 461 -154 246 196 0 0 chr3 142497181 142497227 -75539931 + MLT1L LTR MaLR 568 613 -2 2390 115 27 33 chr3 142498081 142498447 -75538711 + THE1B LTR MaLR 1 364 0 241 349 147 0 chr3 142499084 142499193 -75537965 - MIR SINE MIR -118 144 20 454 252 89 7 chr3 142501168 142501303 -75535855 + MIR SINE MIR 21 166 -96 5560 125 24 17 chr3 142501605 142503659 -75533499 + L1PA15 LINE L1 4102 6165 0 195 312 32 32 chr3 142504551 142504644 -75532514 + MIR SINE MIR 37 129 -133 279 133 0 0 chr3 142505274 142505319 -75531839 + (CA)n Simple_repeat Simple_repeat 2 46 0 214 234 78 16 chr3 142506032 142506096 -75531062 - MIR SINE MIR -37 225 158 236 255 39 39 chr3 142506409 142506511 -75530647 + LTR67 LTR ERVL 413 514 -43 277 345 149 0 chr3 142506915 142507089 -75530069 - L3 LINE CR1 -7 1570 1371 777 313 52 12 chr3 142507301 142507630 -75529528 + LTR16C LTR ERVL 150 491 0 436 320 91 5 chr3 142507743 142507940 -75529218 + MIR SINE MIR 20 233 -29 361 180 135 11 chr3 142507955 142508044 -75529114 - MIR SINE MIR -66 196 97 524 312 35 0 chr3 142508045 142508244 -75528914 + L2 LINE L2 2850 3055 -258 461 321 56 32 chr3 142508434 142508453 -75528705 - L1MEd LINE L1 -5359 760 743 417 39 0 0 chr3 142508453 142508504 -75528654 + (TC)n Simple_repeat Simple_repeat 1 51 0 461 321 56 32 chr3 142508504 142508733 -75528425 - L1MEd LINE L1 -5376 743 506 304 274 61 49 chr3 142508976 142509140 -75528018 - L1MEd LINE L1 -5942 177 12 417 281 112 11 chr3 142509239 142509417 -75527741 - MIR SINE MIR -2 260 65 302 266 208 23 chr3 142509461 142509634 -75527524 + MIR SINE MIR 58 262 0 730 316 89 10 chr3 142510037 142510442 -75526716 - LTR16A LTR ERVL 0 450 14 186 305 121 75 chr3 142510521 142510695 -75526463 + L2 LINE L2 3086 3267 -5 25 0 0 0 chr3 142510828 142510853 -75526305 + AT_rich Low_complexity Low_complexity 1 25 0 415 267 98 24 chr3 142511139 142511629 -75525529 + L1ME4a LINE L1 5316 5901 -220 279 0 0 0 chr3 142511811 142511842 -75525316 + (CA)n Simple_repeat Simple_repeat 2 32 0 240 35 0 0 chr3 142511841 142511870 -75525288 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 386 307 25 43 chr3 142512015 142512178 -75524980 + MIR SINE MIR 10 169 -93 769 248 40 22 chr3 142512200 142512422 -75524736 + MIR SINE MIR 5 230 -32 334 276 37 45 chr3 142513365 142513499 -75523659 + L2 LINE L2 2950 3082 -190 1826 222 110 6 chr3 142513612 142514283 -75522875 - Charlie2 DNA MER1_type -266 2596 1856 442 236 118 0 chr3 142514419 142514546 -75522612 - Charlie2 DNA MER1_type -2633 149 8 334 179 26 26 chr3 142515103 142515181 -75521977 - MER117 DNA MER1_type -33 164 87 225 227 0 0 chr3 142515297 142515341 -75521817 + MIR SINE MIR 101 144 -64 256 173 77 0 chr3 142516049 142516101 -75521057 - L2 LINE L2 0 3313 3258 505 307 33 7 chr3 142516277 142516427 -75520731 - MIR SINE MIR -75 187 34 588 253 66 6 chr3 142516839 142517005 -75520153 + MER69A DNA AcHobo 2 177 0 1915 130 14 14 chr3 142517461 142517753 -75519405 + AluY SINE Alu 19 310 -1 1796 122 44 4 chr3 142518131 142518584 -75518574 + AluSg SINE Alu 1 464 0 211 231 31 15 chr3 142518618 142518683 -75518475 - L2 LINE L2 -660 2654 2589 663 330 13 9 chr3 142519515 142519745 -75517413 + MIR SINE MIR 12 242 -20 194 174 0 87 chr3 142520105 142520151 -75517007 - MIR SINE MIR -85 123 82 650 219 30 24 chr3 142520762 142520926 -75516232 - MIR SINE MIR -22 240 76 988 178 27 5 chr3 142521618 142521803 -75515355 - MER5A DNA MER1_type 0 189 1 525 301 55 0 chr3 142522737 142522900 -75514258 + MIR3 SINE MIR 30 201 -7 180 0 0 0 chr3 142522996 142523016 -75514142 + (CATCT)n Simple_repeat Simple_repeat 3 22 0 254 246 0 0 chr3 142524061 142524130 -75513028 + L1ME4a LINE L1 5968 6036 -85 512 242 16 0 chr3 142525240 142525368 -75511790 - MER94 DNA DNA 0 134 5 309 367 43 8 chr3 142525718 142525884 -75511274 - MIR SINE MIR -36 172 3 599 237 227 30 chr3 142526318 142526613 -75510545 - L2 LINE L2 -19 3294 2942 430 314 67 31 chr3 142526612 142526835 -75510323 - MIR SINE MIR -20 242 12 * 314 296 117 38 chr3 142527353 142527414 -75509744 - L1ME LINE L1 -370 5751 5696 375 78 0 0 chr3 142527414 142527465 -75509693 + (TA)n Simple_repeat Simple_repeat 2 52 0 314 296 117 38 chr3 142527465 142527643 -75509515 - L1ME LINE L1 -425 5696 5493 441 296 95 65 chr3 142527906 142528338 -75508820 + L2 LINE L2 2148 2592 -722 362 180 190 20 chr3 142528443 142528543 -75508615 - MIR SINE MIR -64 198 82 578 241 9 0 chr3 142528768 142528880 -75508278 + MIR SINE MIR 1 113 -149 617 234 32 19 chr3 142528880 142529034 -75508124 + MLT1D LTR MaLR 1 156 -349 610 281 79 9 chr3 142529078 142529306 -75507852 + MLT1D LTR MaLR 224 467 0 2953 124 26 65 chr3 142529310 142529944 -75507214 - MER4B LTR ERV1 -1 778 2 418 318 47 20 chr3 142529947 142530095 -75507063 + MIR SINE MIR 110 261 -1 509 188 181 7 chr3 142531032 142531176 -75505982 - MER5A DNA MER1_type 0 189 21 237 108 0 0 chr3 142531359 142531396 -75505762 + (GGGA)n Simple_repeat Simple_repeat 1 37 0 657 171 132 7 chr3 142531433 142531585 -75505573 - MLT1B LTR MaLR -219 171 1 183 359 0 0 chr3 142531585 142531638 -75505520 + MIR SINE MIR 81 133 -129 1029 261 67 41 chr3 142531786 142532203 -75504955 - LTR16C LTR ERVL 0 491 64 264 225 113 28 chr3 142532596 142532667 -75504491 + L2 LINE L2 3225 3301 -12 499 303 0 8 chr3 142534029 142534148 -75503010 + L2 LINE L2 3154 3271 -1 251 274 0 0 chr3 142534196 142534258 -75502900 + (CAT)n Simple_repeat Simple_repeat 1 62 0 180 0 0 0 chr3 142534736 142534756 -75502402 + (A)n Simple_repeat Simple_repeat 1 20 0 971 176 25 29 chr3 142535399 142535603 -75501555 - MER3 DNA MER1_type -5 204 2 362 180 42 0 chr3 142535954 142536045 -75501113 - MLT1F1 LTR MaLR -24 546 449 771 206 153 106 chr3 142536109 142536513 -75500645 - MLT1F1 LTR MaLR -130 437 15 4800 32 0 2 chr3 142536580 142537146 -75500012 - L1PA5 LINE L1 0 6154 5590 207 0 0 0 chr3 142537760 142537783 -75499375 + (A)n Simple_repeat Simple_repeat 1 23 0 971 176 25 29 chr3 142538427 142538631 -75498527 - MER3 DNA MER1_type -5 204 2 2270 118 0 0 chr3 142538904 142539208 -75497950 - AluSg SINE Alu -6 304 1 2216 96 6 13 chr3 142539575 142539887 -75497271 - AluY SINE Alu -1 310 1 271 256 12 12 chr3 142541623 142541709 -75495449 - MIR SINE MIR -11 251 166 234 259 0 0 chr3 142541732 142541786 -75495372 + (TTCA)n Simple_repeat Simple_repeat 1 54 0 191 276 97 92 chr3 142541786 142541971 -75495187 - L2 LINE L2 -2 3311 3126 235 362 114 0 chr3 142542733 142542838 -75494320 - MIR3 SINE MIR -7 201 85 1258 267 106 39 chr3 142542877 142543429 -75493729 - MLT1H1 LTR MaLR -10 545 1 21 0 0 0 chr3 142543450 142543471 -75493687 + AT_rich Low_complexity Low_complexity 1 21 0 347 308 0 0 chr3 142543832 142543910 -75493248 - MIR3 SINE MIR -49 159 82 2119 179 62 20 chr3 142544115 142544617 -75492541 + Charlie1b DNA MER1_type 1 523 0 1243 204 5 0 chr3 142545124 142545345 -75491813 - MER58A DNA MER1_type -1 223 2 194 188 0 0 chr3 142545449 142545481 -75491677 - L2 LINE L2 -17 3296 3265 * 317 306 141 24 chr3 142545453 142545623 -75491535 - MIR SINE MIR -15 247 58 6426 177 31 15 chr3 142546118 142548519 -75488639 - L1PA16 LINE L1 0 6166 3722 436 385 20 0 chr3 142548519 142548719 -75488439 - MIR SINE MIR -11 251 48 194 382 69 20 chr3 142549657 142549903 -75487255 + L2 LINE L2 2638 2895 -419 234 91 0 0 chr3 142549971 142550004 -75487154 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 273 365 48 24 chr3 142550445 142550571 -75486587 - L2 LINE L2 0 3272 3144 2188 89 0 0 chr3 142552056 142552337 -75484821 - AluSg1 SINE Alu -28 281 1 605 269 41 58 chr3 142552537 142552779 -75484379 - MIR SINE MIR 0 262 25 20084 146 20 51 chr3 142553575 142556708 -75480450 + L1M1 LINE L1 13 3243 -4322 3246 90 11 0 chr3 142556708 142557163 -75479995 + L1PB1 LINE L1 5692 6151 0 20084 146 20 51 chr3 142557163 142557482 -75479676 + L1M1 LINE L1 3243 3570 -3995 16873 153 9 53 chr3 142557482 142561462 -75475696 + L1PA12 LINE L1 2228 6166 -2 20084 146 20 51 chr3 142561462 142561480 -75475678 + L1M1 LINE L1 3570 3587 -3978 1832 164 0 11 chr3 142561480 142561809 -75475349 + AluSx SINE Alu 1 326 0 20084 146 20 51 chr3 142561809 142562742 -75474416 + L1M1 LINE L1 3587 4281 -3284 733 154 0 0 chr3 142562842 142562978 -75474180 + L1MA7 LINE L1 6153 6288 -3 304 300 73 45 chr3 142563177 142563287 -75473871 + L2 LINE L2 3142 3254 -18 204 111 0 0 chr3 142563291 142563327 -75473831 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 247 262 56 74 chr3 142563756 142563904 -75473254 + MIR SINE MIR 104 249 -13 373 363 30 12 chr3 142563931 142564099 -75473059 + MIR3 SINE MIR 30 200 -8 519 17 0 0 chr3 142565285 142565345 -75471813 + (TG)n Simple_repeat Simple_repeat 1 60 0 922 119 0 15 chr3 142565352 142565486 -75471672 - AluSp SINE Alu -30 283 152 973 193 40 0 chr3 142566070 142566246 -75470912 + MER5A DNA MER1_type 1 183 -6 360 276 14 35 chr3 142568420 142568565 -75468593 + MER117 DNA MER1_type 6 147 -50 2198 120 0 0 chr3 142568853 142569145 -75468013 - AluSx SINE Alu -20 292 1 390 271 19 71 chr3 142570309 142570464 -75466694 + L2 LINE L2 2930 3076 -196 410 264 139 5 chr3 142570466 142570674 -75466484 - LTR16C LTR ERVL -2 489 254 510 391 0 0 chr3 142570966 142571127 -75466031 + L2 LINE L2 3111 3271 -1 609 307 58 59 chr3 142571953 142572456 -75464702 - L2 LINE L2 -2 3270 2771 307 331 38 107 chr3 142572649 142573099 -75464059 + L2 LINE L2 2853 3271 -1 552 285 0 0 chr3 142573250 142573387 -75463771 - MER96 DNA MER1_type? -28 147 11 264 324 0 0 chr3 142573376 142573487 -75463671 - MER103 DNA DNA -45 121 11 * 264 356 168 5 chr3 142575296 142575670 -75461488 + L2 LINE L2 2312 2746 -568 697 186 84 6 chr3 142575780 142575957 -75461201 + L1PA16 LINE L1 5936 6156 -9 180 0 0 0 chr3 142575961 142575981 -75461177 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 283 313 169 23 chr3 142576085 142576257 -75460901 + MIR SINE MIR 41 236 -26 3414 64 18 7 chr3 142576413 142576852 -75460306 - MLT2A1 LTR ERVL 0 444 1 204 227 0 0 chr3 142577818 142577862 -75459296 - L2 LINE L2 0 3313 3270 197 318 34 11 chr3 142577986 142578074 -75459084 + L2 LINE L2 3223 3312 -1 429 283 33 13 chr3 142579051 142579203 -75457955 + MER5A DNA MER1_type 2 156 -33 353 218 45 73 chr3 142579261 142579371 -75457787 - MIR SINE MIR -67 141 35 302 352 75 48 chr3 142579725 142579952 -75457206 + L2 LINE L2 3027 3259 -13 207 363 68 47 chr3 142582553 142582743 -75454415 + MIR SINE MIR 5 198 -64 487 274 11 74 chr3 142582922 142583097 -75454061 - MIR3 SINE MIR -28 180 17 194 261 118 76 chr3 142583305 142583424 -75453734 - L2 LINE L2 -1 3271 3148 22 0 0 0 chr3 142583559 142583581 -75453577 + AT_rich Low_complexity Low_complexity 1 22 0 2006 70 0 18 chr3 142583762 142584034 -75453124 - L1PA7 LINE L1 -1 6153 5887 692 239 6 19 chr3 142584053 142584212 -75452946 + MIR SINE MIR 98 254 -8 925 180 35 78 chr3 142584301 142584585 -75452573 - MLT2C1 LTR ERVL 0 397 126 2906 0 0 0 chr3 142584585 142584896 -75452262 - AluYa5 SINE Alu 0 311 1 5152 183 23 23 chr3 142584907 142585060 -75452098 - L1MA10 LINE L1 -3 6331 6180 222 118 0 0 chr3 142585060 142585094 -75452064 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 5152 183 23 23 chr3 142585094 142585397 -75451761 - L1MA10 LINE L1 -154 6180 5879 2342 153 48 15 chr3 142585397 142585809 -75451349 + MSTB LTR MaLR 1 426 0 5152 183 23 23 chr3 142585809 142587009 -75450149 - L1MA10 LINE L1 -455 5879 4668 3368 175 11 40 chr3 142587008 142587219 -75449939 + L1 LINE L1 3923 4139 -2007 * 2124 90 7 28 chr3 142587219 142587535 -75449623 + AluSc SINE Alu 1 310 0 3368 175 11 40 chr3 142587535 142588085 -75449073 + L1 LINE L1 4139 4664 -1482 447 149 112 52 chr3 142588085 142588219 -75448939 - MLT2C1 LTR ERVL -255 142 1 234 218 0 0 chr3 142588580 142588635 -75448523 - L1MC4 LINE L1 -1337 6705 6651 251 255 87 106 chr3 142588637 142588798 -75448360 + MIR SINE MIR 31 188 -74 690 244 95 0 chr3 142588892 142589060 -75448098 + MIR SINE MIR 78 261 -1 317 268 161 0 chr3 142589092 142589204 -75447954 + MIR3 SINE MIR 36 165 -43 399 328 115 27 chr3 142590426 142590722 -75446436 - L3 LINE CR1 -5 1572 1251 340 147 177 4 chr3 142590729 142590816 -75446342 - MLT1I LTR MaLR -14 405 318 2208 183 34 86 chr3 142591601 142592185 -75444973 + MLT2B3 LTR ERVL 1 554 0 429 304 141 26 chr3 142592314 142592627 -75444531 - L2 LINE L2 -652 2662 2314 433 265 46 41 chr3 142593301 142593497 -75443661 + MIR SINE MIR 20 216 -46 341 311 66 26 chr3 142593870 142594021 -75443137 + MIR3 SINE MIR 21 177 -31 * 660 249 45 11 chr3 142594020 142594197 -75442961 + MIR SINE MIR 78 260 -2 438 20 0 0 chr3 142594464 142594515 -75442643 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 1577 255 56 2 chr3 142594568 142594980 -75442178 + LTR16C LTR ERVL 58 491 0 954 313 161 24 chr3 142595914 142596417 -75440741 - L2 LINE L2 0 3272 2839 1173 173 5 0 chr3 142596417 142596625 -75440533 - MER3 DNA MER1_type 0 209 1 954 313 161 24 chr3 142596625 142597167 -75439991 - L2 LINE L2 -433 2839 2091 549 222 22 15 chr3 142597344 142597479 -75439679 + MIR SINE MIR 9 144 -118 346 260 17 68 chr3 142598305 142598482 -75438676 - MLT1H LTR MaLR -1 548 381 779 247 57 26 chr3 142599257 142599484 -75437674 - MIR SINE MIR -16 246 13 21 0 0 0 chr3 142599830 142599851 -75437307 + AT_rich Low_complexity Low_complexity 1 21 0 238 78 20 20 chr3 142600083 142600134 -75437024 + (GTTTG)n Simple_repeat Simple_repeat 5 55 0 2139 104 0 0 chr3 142600134 142600413 -75436745 - AluY SINE Alu -32 279 1 318 269 0 13 chr3 142600672 142600750 -75436408 - MIR SINE MIR -151 111 35 257 75 25 0 chr3 142600785 142600825 -75436333 + (TG)n Simple_repeat Simple_repeat 2 42 0 675 37 0 0 chr3 142600834 142600916 -75436242 + (TATATG)n Simple_repeat Simple_repeat 3 84 0 14132 128 41 3 chr3 142600926 142603244 -75433914 - Tigger1 DNA MER2_type -10 2408 2 285 236 0 0 chr3 142603277 142603332 -75433826 + Tigger5 DNA MER2_type 1 55 -2268 * 340 221 0 0 chr3 142603302 142603370 -75433788 + Tigger5 DNA MER2_type 2252 2319 -4 245 250 0 11 chr3 142603374 142603400 -75433758 + (TA)n Simple_repeat Simple_repeat 2 27 -61 3712 135 31 2 chr3 142603400 142603985 -75433173 + MER7C DNA MER2_type 1 602 0 245 250 0 11 chr3 142603985 142604046 -75433112 + (TA)n Simple_repeat Simple_repeat 27 88 0 1680 238 25 64 chr3 142604202 142604795 -75432363 + MER74B LTR ERVL 50 619 -3 275 289 134 0 chr3 142605233 142605330 -75431828 + L2 LINE L2 3204 3313 0 653 225 167 36 chr3 142605464 142605686 -75431472 + MIR SINE MIR 12 262 0 1070 260 39 10 chr3 142608657 142609104 -75428054 + LTR33 LTR ERVL 2 521 0 1077 8 0 0 chr3 142610836 142610962 -75426196 + L1HS LINE L1 6023 6148 -7 255 31 0 0 chr3 142610965 142610997 -75426161 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 231 213 0 0 chr3 142611103 142611150 -75426008 + L1ME LINE L1 5737 5783 -338 1727 200 3 13 chr3 142611587 142611952 -75425206 - AluJo SINE Alu 0 362 1 616 251 80 12 chr3 142613716 142613879 -75423279 + MER96 DNA MER1_type 2 175 0 182 339 17 0 chr3 142617416 142617475 -75419683 + MER5A DNA MER1_type 128 187 -2 404 273 174 0 chr3 142617486 142617658 -75419500 - MIR SINE MIR -59 203 2 243 215 0 0 chr3 142619912 142619977 -75417181 + (CA)n Simple_repeat Simple_repeat 2 66 0 449 255 124 19 chr3 142620379 142620540 -75416618 - MER5B DNA MER1_type 0 178 1 220 276 25 163 chr3 142620647 142620843 -75416315 - L2 LINE L2 -89 3183 3015 333 260 160 59 chr3 142620961 142621180 -75415978 + MIR SINE MIR 21 261 -1 2299 231 78 30 chr3 142621268 142622221 -75414937 - Charlie2 DNA MER1_type 0 2862 1865 538 243 144 62 chr3 142622220 142622512 -75414646 - Charlie2 DNA MER1_type -2546 316 1 * 431 245 123 13 chr3 142624304 142624459 -75412699 + MIR SINE MIR 88 259 -3 2092 135 0 7 chr3 142624917 142625213 -75411945 - AluSx SINE Alu -18 294 1 345 303 92 9 chr3 142625233 142625342 -75411816 + MIR SINE MIR 32 149 -113 360 271 171 38 chr3 142626876 142627086 -75410072 + Charlie8 DNA MER1_type 12 249 -2168 905 260 154 7 chr3 142627565 142627838 -75409320 - LTR16C LTR ERVL -2 489 177 198 0 0 0 chr3 142629133 142629155 -75408003 + (TAA)n Simple_repeat Simple_repeat 3 24 0 24 0 0 0 chr3 142629459 142629483 -75407675 + AT_rich Low_complexity Low_complexity 1 24 0 216 302 107 53 chr3 142630566 142630735 -75406423 - L2 LINE L2 -1 3271 3094 634 303 48 5 chr3 142630789 142630977 -75406181 + MIR SINE MIR 12 207 -55 455 256 71 18 chr3 142631452 142631620 -75405538 + MIR SINE MIR 71 247 -15 478 249 42 84 chr3 142632070 142632307 -75404851 + L2 LINE L2 1441 1667 -1647 1312 309 54 8 chr3 142632328 142633027 -75404131 + L2 LINE L2 2579 3313 0 2023 169 0 3 chr3 142633816 142634129 -75403029 - AluJo SINE Alu 0 312 1 22 0 0 0 chr3 142634287 142634309 -75402849 + AT_rich Low_complexity Low_complexity 1 22 0 1229 204 37 98 chr3 142635125 142635227 -75401931 - Charlie4a DNA MER1_type -1453 508 401 2184 109 27 0 chr3 142635227 142635520 -75401638 - AluSc SINE Alu -8 301 1 1229 204 37 98 chr3 142635520 142635957 -75401201 - Charlie4a DNA MER1_type -1560 401 2 1335 171 17 30 chr3 142635996 142636295 -75400863 + MER58B DNA MER1_type 47 341 0 1429 168 17 88 chr3 142637546 142637968 -75399190 - Charlie5 DNA MER1_type 0 2623 2232 414 145 12 0 chr3 142637976 142638059 -75399099 - MER3 DNA MER1_type -42 167 84 347 308 0 0 chr3 142638248 142638326 -75398832 + MIR3 SINE MIR 82 159 -49 21 0 0 0 chr3 142638687 142638708 -75398450 + AT_rich Low_complexity Low_complexity 1 21 0 673 266 86 43 chr3 142638729 142639142 -75398016 + MLT1H1 LTR MaLR 1 402 -153 1990 128 17 7 chr3 142639434 142639723 -75397435 + AluSg SINE Alu 5 296 -14 1592 179 29 39 chr3 142640399 142640711 -75396447 - AluJb SINE Alu -3 309 1 195 100 0 0 chr3 142640773 142640803 -75396355 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1551 193 0 29 chr3 142640963 142641237 -75395921 + AluJo SINE Alu 1 266 -46 300 27 0 0 chr3 142641252 142641289 -75395869 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1404 249 116 4 chr3 142642399 142642880 -75394278 - L1ME2 LINE L1 -9 6155 5621 627 156 18 28 chr3 142642931 142643040 -75394118 + FRAM SINE Alu 32 139 -37 215 0 67 0 chr3 142643048 142643078 -75394080 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 2107 133 25 19 chr3 142643126 142643488 -75393670 - THE1B LTR MaLR 0 364 1 276 213 225 12 chr3 142643673 142643753 -75393405 + L2 LINE L2 3171 3267 -5 866 254 151 36 chr3 142644384 142645065 -75392093 + L2 LINE L2 2459 3313 0 758 253 82 18 chr3 142645593 142645973 -75391185 + MER113 DNA MER1_type? 89 492 -29 339 349 57 31 chr3 142645980 142646172 -75390986 + MIR SINE MIR 14 210 -52 273 200 67 0 chr3 142646402 142646462 -75390696 + MLT1A2 LTR MaLR 4 67 -307 2351 193 31 7 chr3 142646648 142647105 -75390053 + MLT1A1-int LTR MaLR 1268 1735 0 1839 174 34 3 chr3 142647142 142647469 -75389689 + MLT1A1 LTR MaLR 29 365 0 1813 168 0 16 chr3 142647626 142647930 -75389228 + AluJb SINE Alu 1 299 -13 583 293 67 38 chr3 142649190 142649461 -75387697 + L1MD2 LINE L1 2 287 -6253 2165 123 0 0 chr3 142649461 142649754 -75387404 + AluSx SINE Alu 1 293 -19 583 293 67 38 chr3 142649754 142649827 -75387331 + L1MD2 LINE L1 287 356 -6184 1676 200 94 16 chr3 142650406 142650851 -75386307 + L1MD2 LINE L1 4106 4585 -1955 3185 197 61 57 chr3 142650859 142652098 -75385060 + L1MD2 LINE L1 5455 6699 -54 816 234 80 0 chr3 142652092 142652318 -75384840 - L1MB8 LINE L1 -1 6177 5934 * 323 105 0 18 chr3 142652318 142652375 -75384783 + L1MC4a LINE L1 7753 7808 0 180 245 0 0 chr3 142653012 142653065 -75384093 + (TA)n Simple_repeat Simple_repeat 1 53 0 260 290 12 89 chr3 142653240 142653643 -75383515 + L1ME4a LINE L1 5541 5912 -209 24 32 0 0 chr3 142653643 142653674 -75383484 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr3 142653753 142653781 -75383377 + AT_rich Low_complexity Low_complexity 1 28 0 291 389 54 6 chr3 142653962 142654129 -75383029 + MIR3 SINE MIR 19 193 -15 2061 127 35 44 chr3 142655578 142655918 -75381240 + MER1B DNA MER1_type 1 337 0 277 314 0 0 chr3 142655975 142656045 -75381113 + LTR16A LTR ERVL 64 133 -317 204 40 0 0 chr3 142656945 142656970 -75380188 + (A)n Simple_repeat Simple_repeat 1 25 0 305 268 49 32 chr3 142657879 142658002 -75379156 + MIR SINE MIR 106 230 -32 2011 108 47 24 chr3 142658471 142658768 -75378390 - AluSx SINE Alu -8 304 1 207 252 149 19 chr3 142658865 142658972 -75378186 - MIR SINE MIR 0 262 142 436 350 111 4 chr3 142659433 142659659 -75377499 - MIR SINE MIR -4 258 9 792 207 120 37 chr3 142660238 142660455 -75376703 + MIR SINE MIR 6 240 -22 325 295 8 39 chr3 142661048 142661177 -75375981 - MLT1G1 LTR MaLR -300 295 171 234 0 0 0 chr3 142663171 142663197 -75373961 + (A)n Simple_repeat Simple_repeat 1 26 0 683 268 12 93 chr3 142663329 142663466 -75373692 + MLT1H LTR MaLR 40 187 -362 1942 158 129 5 chr3 142663466 142663847 -75373311 - MSTA LTR MaLR 0 428 1 683 268 12 93 chr3 142663847 142664052 -75373106 + MLT1H LTR MaLR 187 354 -195 21 36 0 0 chr3 142664345 142664373 -75372785 + AT_rich Low_complexity Low_complexity 1 28 0 356 261 87 11 chr3 142664565 142664657 -75372501 + MIR SINE MIR 35 133 -129 181 268 0 89 chr3 142664687 142664743 -75372415 + L2 LINE L2 3210 3260 -12 251 303 119 9 chr3 142664830 142664939 -75372219 - L2 LINE L2 -9 3304 3184 * 646 270 185 0 chr3 142664938 142665127 -75372031 - MIR SINE MIR -31 231 8 23 0 0 0 chr3 142665498 142665521 -75371637 + AT_rich Low_complexity Low_complexity 1 23 0 186 366 0 14 chr3 142665906 142665977 -75371181 + MIR3 SINE MIR 3 72 -136 212 307 57 23 chr3 142666003 142666091 -75371067 - MIR3 SINE MIR -13 195 105 3225 243 83 24 chr3 142666502 142668767 -75368391 + L1ME2 LINE L1 3758 6164 0 210 292 0 28 chr3 142668929 142669001 -75368157 + CT-rich Low_complexity Low_complexity 2 71 0 207 100 0 0 chr3 142669010 142669040 -75368118 + (TCC)n Simple_repeat Simple_repeat 3 32 0 186 43 0 0 chr3 142669917 142669940 -75367218 + (TG)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chr3 142670103 142670125 -75367033 + AT_rich Low_complexity Low_complexity 1 22 0 475 210 0 0 chr3 142670511 142670592 -75366566 - AluJ/FLAM SINE Alu -228 84 4 644 249 122 9 chr3 142670929 142671158 -75366000 - MIR SINE MIR -3 259 5 21 0 0 0 chr3 142671187 142671208 -75365950 + AT_rich Low_complexity Low_complexity 1 21 0 224 262 115 49 chr3 142671718 142671840 -75365318 + MIR3 SINE MIR 73 202 -6 23 0 0 0 chr3 142672259 142672282 -75364876 + AT_rich Low_complexity Low_complexity 1 23 0 195 307 68 57 chr3 142673121 142673209 -75363949 + MER5B DNA MER1_type 38 126 -52 281 320 0 0 chr3 142673383 142673461 -75363697 - MER94 DNA DNA -18 116 39 615 248 8 0 chr3 142673760 142673889 -75363269 + MER5B DNA MER1_type 49 178 0 432 0 0 0 chr3 142675616 142675664 -75361494 + (TG)n Simple_repeat Simple_repeat 1 48 0 2169 92 0 7 chr3 142675664 142675946 -75361212 - AluSq SINE Alu -33 280 1 15557 34 3 1 chr3 142676932 142679570 -75357588 - L1PA4 LINE L1 -11 6144 3502 1255 299 41 7 chr3 142679954 142680372 -75356786 - LTR16A LTR ERVL -3 447 16 248 300 0 0 chr3 142680735 142680805 -75356353 - MLT1J LTR MaLR -341 170 101 432 318 23 0 chr3 142681931 142682060 -75355098 + MIR3 SINE MIR 49 180 -28 1151 279 100 13 chr3 142682348 142682817 -75354341 + MLT1J LTR MaLR 2 511 0 228 337 55 58 chr3 142684000 142684309 -75352849 - L2 LINE L2 -6 3307 3000 289 336 123 41 chr3 142684455 142684747 -75352411 - L2 LINE L2 0 3272 2957 259 270 0 16 chr3 142684798 142684861 -75352297 + CT-rich Low_complexity Low_complexity 3 64 0 324 237 0 0 chr3 142685075 142685134 -75352024 + L3b LINE CR1 1198 1256 -327 290 276 82 79 chr3 142685254 142685609 -75351549 + L3b LINE CR1 1111 1466 -117 259 345 70 7 chr3 142685999 142686141 -75351017 + L2 LINE L2 2925 3075 -197 707 240 23 12 chr3 142686141 142686312 -75350846 + MLT1G LTR MaLR 1 173 -422 307 128 0 0 chr3 142686326 142686373 -75350785 - MLT2B1 LTR ERVL 0 397 351 222 118 0 0 chr3 142686374 142686408 -75350750 + (TG)n Simple_repeat Simple_repeat 2 35 0 1137 224 130 50 chr3 142686418 142686871 -75350287 - MLT2B1 LTR ERVL -20 464 2 748 268 92 46 chr3 142686874 142687256 -75349902 + MLT1G LTR MaLR 144 579 -11 425 156 61 0 chr3 142687456 142687565 -75349593 + LTR50 LTR ERVL 407 793 -2 217 349 124 8 chr3 142687824 142687953 -75349205 - L2 LINE L2 -5 3267 3124 2540 60 0 0 chr3 142688297 142688599 -75348559 - AluY SINE Alu -9 302 1 314 309 43 11 chr3 142688606 142688700 -75348458 - L2 LINE L2 -5 3267 3171 306 367 93 0 chr3 142688688 142688838 -75348320 + MIR SINE MIR 43 206 -56 * 294 336 64 8 chr3 142689215 142689340 -75347818 - MIR SINE MIR -74 188 57 5015 25 0 13 chr3 142689453 142690054 -75347104 + L1PA4 LINE L1 5558 6150 -5 1072 129 0 25 chr3 142690288 142690496 -75346662 + AluSg/x SINE Alu 123 326 0 2290 84 0 3 chr3 142690572 142690869 -75346289 + AluY SINE Alu 1 296 -15 561 308 25 107 chr3 142691038 142691392 -75345766 - L2 LINE L2 -43 3229 2905 521 256 78 5 chr3 142691451 142691642 -75345516 - LTR16C LTR ERVL -67 424 220 2431 70 7 0 chr3 142691684 142691983 -75345175 + AluY SINE Alu 1 301 -10 333 272 110 15 chr3 142692271 142692407 -75344751 + MLT1L LTR MaLR 112 260 -355 490 341 23 0 chr3 142693284 142693413 -75343745 + MER91A DNA MER1_type 2 133 -63 623 232 83 78 chr3 142693414 142693539 -75343619 - LTR37B LTR ERV1 0 468 345 2210 120 0 0 chr3 142693539 142693838 -75343320 + AluSq SINE Alu 1 299 -14 623 232 83 78 chr3 142693838 142694160 -75342998 - LTR37B LTR ERV1 -123 345 19 260 271 17 0 chr3 142695898 142695957 -75341201 - L2 LINE L2 -15 3257 3198 1141 179 197 44 chr3 142696518 142696858 -75340300 - MSTD LTR MaLR 0 396 5 496 240 140 0 chr3 142696869 142697019 -75340139 + MIR SINE MIR 79 249 -13 1000 209 0 0 chr3 142697150 142697351 -75339807 - MER3 DNA MER1_type -4 205 5 1087 196 43 0 chr3 142697411 142697620 -75339538 + MER20 DNA MER1_type 2 219 0 228 275 25 12 chr3 142697732 142697812 -75339346 - MLT1J LTR MaLR -196 315 235 2361 109 3 0 chr3 142697927 142698238 -75338920 + AluSx SINE Alu 1 312 0 290 305 0 11 chr3 142698496 142698591 -75338567 - MLT1L LTR MaLR -327 288 195 324 292 31 46 chr3 142699060 142699190 -75337968 - MIR3 SINE MIR -54 154 27 234 320 33 59 chr3 142699232 142699385 -75337773 + L2 LINE L2 2706 2854 -460 1478 211 66 8 chr3 142699975 142700368 -75336790 - MLT1C LTR MaLR -6 461 46 5013 134 43 0 chr3 142700652 142701591 -75335567 + L1P LINE L1 3512 4490 -1656 770 248 27 19 chr3 142701762 142702020 -75335138 + L1MB1 LINE L1 5783 6042 -147 2540 60 0 0 chr3 142702431 142702733 -75334425 - AluY SINE Alu -9 302 1 314 309 43 11 chr3 142702740 142702834 -75334324 - L2 LINE L2 -5 3267 3171 306 367 93 0 chr3 142702822 142702972 -75334186 + MIR SINE MIR 43 206 -56 * 294 336 64 8 chr3 142703349 142703474 -75333684 - MIR SINE MIR -74 188 57 5015 25 0 13 chr3 142703587 142704188 -75332970 + L1PA4 LINE L1 5558 6150 -5 1072 129 0 25 chr3 142704422 142704630 -75332528 + AluSg/x SINE Alu 125 328 0 2580 58 0 0 chr3 142704706 142705014 -75332144 + AluY SINE Alu 1 308 -3 2676 251 32 12 chr3 142706178 142706948 -75330210 + L1ME3A LINE L1 5341 6126 -44 348 252 165 10 chr3 142707182 142707285 -75329873 - L2 LINE L2 0 3313 3195 204 296 28 42 chr3 142707977 142708048 -75329110 + L3b LINE CR1 1427 1496 -87 339 377 77 47 chr3 142708163 142708463 -75328695 + L2 LINE L2 2931 3239 -33 2158 68 43 0 chr3 142708479 142708759 -75328399 - AluY SINE Alu -18 293 2 205 244 0 0 chr3 142708759 142708800 -75328358 + L2 LINE L2 3270 3310 -3 2834 208 25 13 chr3 142709292 142709894 -75327264 + MER90 LTR ERV1 6 614 0 225 0 0 0 chr3 142710484 142710509 -75326649 + (CA)n Simple_repeat Simple_repeat 2 26 0 22 88 0 0 chr3 142710565 142710622 -75326536 + AT_rich Low_complexity Low_complexity 1 57 0 420 320 77 28 chr3 142710977 142711034 -75326124 - MIR SINE MIR -72 190 137 436 88 11 132 chr3 142711034 142711070 -75326088 + MADE1 DNA Mariner 1 40 -40 2335 75 17 3 chr3 142711070 142711363 -75325795 - AluY SINE Alu -14 297 1 436 88 11 132 chr3 142711363 142711417 -75325741 + MADE1 DNA Mariner 40 80 0 420 320 77 28 chr3 142711417 142711540 -75325618 - MIR SINE MIR -125 137 1 891 303 178 5 chr3 142711599 142712042 -75325116 + L2 LINE L2 2377 2896 -418 877 102 45 18 chr3 142712043 142712208 -75324950 - L1MB1 LINE L1 -3 6165 6013 868 289 137 8 chr3 142712208 142712565 -75324593 + L2 LINE L2 2910 3312 -1 1948 136 21 51 chr3 142712935 142713310 -75323848 + THE1B LTR MaLR 1 364 0 9721 84 8 125 chr3 142713310 142713890 -75323268 + THE1B-int LTR MaLR 1 647 -933 2485 33 3 0 chr3 142713890 142714191 -75322967 - L1PA2 LINE L1 -3 6152 5851 9721 84 8 125 chr3 142714191 142715399 -75321759 + THE1B-int LTR MaLR 647 1580 0 2215 109 16 48 chr3 142715399 142715775 -75321383 + THE1B LTR MaLR 1 364 0 351 239 26 35 chr3 142715781 142715894 -75321264 + MIR SINE MIR 100 211 -51 244 209 0 0 chr3 142716227 142716270 -75320888 + MLT1G LTR MaLR 34 76 -514 767 299 17 8 chr3 142716325 142716559 -75320599 + MLT1G LTR MaLR 353 588 -2 569 342 104 13 chr3 142717423 142717654 -75319504 - MIR SINE MIR -10 252 1 278 241 0 0 chr3 142717703 142717761 -75319397 - MIR SINE MIR -142 120 63 4558 190 21 27 chr3 142718135 142719629 -75317529 + L1MA10 LINE L1 4837 6324 -10 27 0 0 0 chr3 142719670 142719697 -75317461 + AT_rich Low_complexity Low_complexity 1 27 0 360 154 77 0 chr3 142719697 142719762 -75317396 + L1ME2 LINE L1 6038 6107 -57 2913 105 26 0 chr3 142719767 142720195 -75316963 - L1PA13 LINE L1 0 6163 5725 819 323 70 36 chr3 142720205 142720676 -75316482 + L1M2c LINE L1 19 505 -6284 4810 226 84 22 chr3 142720676 142722679 -75314479 + L1MCa LINE L1 1638 3888 -2538 * 4898 157 53 14 chr3 142722676 142723839 -75313319 + L1MA6 LINE L1 5099 6298 -2 247 158 123 0 chr3 142724287 142724344 -75312814 + AluS SINE Alu 3 66 -236 252 275 73 65 chr3 142724344 142724591 -75312567 + L1ME LINE L1 5600 5848 -273 415 335 171 14 chr3 142724761 142725113 -75312045 + L3 LINE CR1 700 1106 -471 551 317 39 19 chr3 142725555 142725763 -75311395 + MIR SINE MIR 23 234 -28 630 234 20 147 chr3 142725789 142725964 -75311194 + MIR SINE MIR 1 124 -138 1881 162 13 22 chr3 142725964 142726278 -75310880 + AluJo SINE Alu 1 311 -1 630 234 20 147 chr3 142726278 142726401 -75310757 + MIR SINE MIR 124 261 -1 750 294 46 31 chr3 142727539 142727865 -75309293 - MER102b DNA MER1_type -10 331 1 290 322 201 0 chr3 142727875 142728049 -75309109 + MIR SINE MIR 20 228 -34 2156 72 6 16 chr3 142728453 142728774 -75308384 + L1M1 LINE L1 5254 5571 -731 407 140 0 0 chr3 142729912 142729969 -75307189 + AluS SINE Alu 1 57 -261 309 226 0 0 chr3 142730154 142730216 -75306942 + MER63 DNA MER1_type 38 725 -337 * 357 240 0 0 chr3 142730215 142730290 -75306868 + MER63 DNA MER1_type 988 1062 0 198 0 0 0 chr3 142730426 142730448 -75306710 + (TTA)n Simple_repeat Simple_repeat 3 24 0 402 301 99 6 chr3 142730698 142731010 -75306148 + L1ME4a LINE L1 5575 5915 -206 712 292 85 8 chr3 142731905 142732141 -75305017 + MIR SINE MIR 5 258 -4 279 37 37 37 chr3 142734548 142734602 -75302556 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 6195 30 3 1 chr3 142734606 142735338 -75301820 - L1PA3 LINE L1 -3 6152 5420 915 39 0 0 chr3 142735338 142735467 -75301691 + L1P LINE L1 5273 5401 -754 186 138 0 0 chr3 142735682 142735711 -75301447 + MIR SINE MIR 122 150 -112 192 242 45 45 chr3 142735733 142735799 -75301359 - L2 LINE L2 -9 3304 3239 192 40 0 0 chr3 142735845 142735870 -75301288 + (CA)n Simple_repeat Simple_repeat 1 25 0 256 174 0 0 chr3 142735881 142735927 -75301231 + MER58B DNA MER1_type 175 220 -121 779 192 12 52 chr3 142735970 142736142 -75301016 + MER58B DNA MER1_type 175 339 -2 379 295 27 27 chr3 142736308 142736420 -75300738 - MIR SINE MIR -67 141 30 425 318 190 6 chr3 142737137 142737316 -75299842 + MIR SINE MIR 51 262 0 950 282 74 26 chr3 142737694 142738197 -75298961 + Charlie7 DNA MER1_type 163 689 -1923 560 270 104 27 chr3 142738760 142739149 -75298009 - LTR16A1 LTR ERVL -1 456 16 1440 236 60 14 chr3 142739333 142739858 -75297300 + MLT1E LTR MaLR 1 588 -5 387 0 0 0 chr3 142739894 142739937 -75297221 + (TG)n Simple_repeat Simple_repeat 2 44 0 208 288 121 0 chr3 142740858 142740924 -75296234 - L2 LINE L2 -8 3264 3191 448 215 264 7 chr3 142741119 142741263 -75295895 - MER5A DNA MER1_type 0 189 9 3976 152 27 6 chr3 142741430 142742126 -75295032 + MER50 LTR ERV1 1 711 -23 844 251 11 5 chr3 142742127 142742318 -75294840 + MIR SINE MIR 70 261 -1 439 344 21 31 chr3 142742430 142742622 -75294536 - MIR SINE MIR -71 191 2 2217 93 4 0 chr3 142743048 142743350 -75293808 + AluSp SINE Alu 5 307 0 411 260 182 32 chr3 142743400 142743554 -75293604 - MIR SINE MIR -71 191 15 734 237 46 0 chr3 142744998 142745192 -75291966 + MER3 DNA MER1_type 1 203 -6 201 39 0 0 chr3 142745909 142745935 -75291223 + (TC)n Simple_repeat Simple_repeat 2 27 0 452 340 69 5 chr3 142746349 142746537 -75290621 - MIR SINE MIR -7 255 56 429 297 62 21 chr3 142746679 142746824 -75290334 - L2 LINE L2 -2 3311 3161 462 218 18 0 chr3 142747060 142747170 -75289988 + MER103 DNA DNA 48 159 -7 949 233 113 24 chr3 142747673 142748046 -75289112 + L1ME3A LINE L1 5765 6170 0 226 231 0 0 chr3 142748402 142748454 -75288704 + L2 LINE L2 2703 2754 -560 26 74 0 0 chr3 142748936 142748990 -75288168 + AT_rich Low_complexity Low_complexity 1 54 0 414 346 88 24 chr3 142749881 142750086 -75287072 + MIR SINE MIR 5 222 -40 2665 134 35 9 chr3 142750279 142750713 -75286445 - L1PA16 LINE L1 -9 6157 5713 380 286 29 0 chr3 142751036 142751141 -75286017 + MIR SINE MIR 99 206 -56 2330 121 0 6 chr3 142751770 142752084 -75285074 + AluSx SINE Alu 1 312 0 600 270 35 17 chr3 142752835 142753009 -75284149 - MER5B DNA MER1_type 0 178 2 288 161 0 0 chr3 142753465 142753527 -75283631 + CT-rich Low_complexity Low_complexity 1 62 0 232 393 103 0 chr3 142754008 142754222 -75282936 - MIR SINE MIR -25 237 2 210 333 8 42 chr3 142755145 142755265 -75281893 - L2 LINE L2 -232 3040 2925 339 281 82 34 chr3 142755383 142755529 -75281629 - MIR SINE MIR 0 262 110 269 341 57 0 chr3 142755862 142755985 -75281173 + L2 LINE L2 3143 3272 0 328 170 28 137 chr3 142756311 142756493 -75280665 + L1ME4a LINE L1 5957 6118 -3 198 0 0 0 chr3 142757544 142757566 -75279592 + (A)n Simple_repeat Simple_repeat 1 22 0 282 182 18 0 chr3 142758964 142759019 -75278139 + MIR SINE MIR 194 249 -13 459 267 33 0 chr3 142760129 142760249 -75276909 + MIR3 SINE MIR 82 205 -3 412 327 165 19 chr3 142760706 142761027 -75276131 - L2 LINE L2 -2 3311 2944 467 111 28 0 chr3 142761028 142761100 -75276058 + AluSq/x SINE Alu 34 107 -206 1635 128 56 12 chr3 142761118 142761369 -75275789 + AluSx SINE Alu 34 295 -17 336 366 191 0 chr3 142761386 142761695 -75275463 - L2 LINE L2 -424 2890 2523 2942 164 5 27 chr3 142761739 142762300 -75274858 + L1MA7 LINE L1 5508 6056 -235 242 316 6 76 chr3 142762342 142762500 -75274658 - L2 LINE L2 -832 2482 2336 * 960 318 159 45 chr3 142762487 142762763 -75274395 - L2 LINE L2 -1335 1979 1736 2179 71 7 0 chr3 142762763 142763045 -75274113 - L1PA7 LINE L1 0 6154 5871 960 318 159 45 chr3 142763045 142763902 -75273256 - L2 LINE L2 -1578 1736 717 463 316 67 41 chr3 142765334 142765869 -75271289 + HAL1b LINE L1 69 617 -731 331 271 50 89 chr3 142765884 142766165 -75270993 + HAL1b LINE L1 665 934 -414 22 0 0 0 chr3 142766317 142766339 -75270819 + AT_rich Low_complexity Low_complexity 1 22 0 1965 151 3 31 chr3 142766423 142766742 -75270416 + AluJb SINE Alu 1 310 -2 1839 127 72 39 chr3 142766807 142767168 -75269990 - THE1C LTR MaLR 0 375 3 1106 262 96 49 chr3 142767268 142767802 -75269356 + L1MC4a LINE L1 5420 5978 -1830 281 265 69 10 chr3 142767900 142768002 -75269156 - MER94 DNA DNA -13 121 14 248 247 13 39 chr3 142768036 142768113 -75269045 - MIR SINE MIR -9 253 179 602 262 28 7 chr3 142768238 142768379 -75268779 - MIR SINE MIR -98 164 21 219 293 41 41 chr3 142769361 142769453 -75267705 - MIR SINE MIR -6 256 162 1223 201 136 45 chr3 142769453 142769851 -75267307 - MER63B DNA MER1_type -1 435 2 219 293 41 41 chr3 142769851 142769905 -75267253 - MIR SINE MIR -99 163 110 25 90 0 0 chr3 142770379 142770446 -75266712 + AT_rich Low_complexity Low_complexity 1 67 0 185 268 0 0 chr3 142770531 142770572 -75266586 - L2 LINE L2 -10 3262 3222 26 0 0 0 chr3 142770599 142770625 -75266533 + AT_rich Low_complexity Low_complexity 1 26 0 241 288 0 0 chr3 142770696 142770762 -75266396 - L1ME4a LINE L1 -82 6039 5974 387 0 0 0 chr3 142770769 142770812 -75266346 + (TG)n Simple_repeat Simple_repeat 1 43 0 * 468 0 0 0 chr3 142770811 142770863 -75266295 + (GA)n Simple_repeat Simple_repeat 1 52 0 185 114 409 0 chr3 142771147 142771191 -75265967 + MIR3 SINE MIR 121 182 -26 343 346 22 7 chr3 142771203 142771339 -75265819 + MIR SINE MIR 1 138 -124 653 207 47 165 chr3 142771350 142771732 -75265426 - MER46C DNA MER2_type -1 337 1 197 235 161 12 chr3 142771735 142771816 -75265342 + MIR SINE MIR 160 252 -10 200 176 0 39 chr3 142771842 142771893 -75265265 + (TTA)n Simple_repeat Simple_repeat 2 50 0 235 312 68 38 chr3 142771913 142772263 -75264895 + L2 LINE L2 2546 2951 -321 315 267 0 11 chr3 142773394 142773484 -75263674 + MIR SINE MIR 48 136 -126 203 267 139 10 chr3 142773547 142773648 -75263510 - MIR SINE MIR -66 196 83 1163 268 23 49 chr3 142773653 142774124 -75263034 + LTR16B LTR ERVL 6 464 0 2702 157 10 8 chr3 142774364 142774847 -75262311 - L1MB5 LINE L1 -8 6166 5683 3035 234 67 25 chr3 142774851 142775551 -75261607 - L1MB5 LINE L1 -751 5395 4726 180 0 0 0 chr3 142775551 142775571 -75261587 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5275 66 5 0 chr3 142775575 142776243 -75260915 - L1PA8 LINE L1 -6 6166 5496 3035 234 67 25 chr3 142776243 142776493 -75260665 - L1MB5 LINE L1 -1422 4724 4392 1993 126 35 35 chr3 142776493 142776866 -75260292 + THE1C LTR MaLR 3 375 0 3035 234 67 25 chr3 142776866 142776937 -75260221 - L1MB5 LINE L1 -1754 4392 4325 339 297 9 0 chr3 142776969 142777080 -75260078 - L1MB5 LINE L1 -2060 4086 3975 423 324 133 9 chr3 142777288 142777498 -75259660 + MIR SINE MIR 20 255 -7 337 289 0 0 chr3 142777508 142777605 -75259553 - Zaphod DNA AcHobo -1 4030 3934 228 304 0 0 chr3 142777889 142777945 -75259213 - L2 LINE L2 -3 3269 3214 358 288 21 63 chr3 142778035 142778226 -75258932 + L2 LINE L2 3030 3212 -101 384 260 73 7 chr3 142778226 142778376 -75258782 - L1ME LINE L1 -360 5802 5643 2848 240 3 3 chr3 142778382 142779028 -75258130 + MER82 DNA MER2_type 7 652 -1 421 340 47 25 chr3 142779028 142779346 -75257812 - L1ME LINE L1 -476 5645 5321 1558 231 73 47 chr3 142779353 142779869 -75257289 - L1ME LINE L1 -1459 4687 4105 9918 26 0 202 chr3 142779869 142781606 -75255552 + SVA Other Other 1 1386 0 1558 231 73 47 chr3 142781606 142781945 -75255213 - L1ME LINE L1 -2041 4105 3776 2267 159 38 9 chr3 142781945 142782389 -75254769 + L1MA4 LINE L1 5831 6295 -5 349 352 55 15 chr3 142782404 142782603 -75254555 + L1MEd LINE L1 941 1147 -4972 3714 64 2 0 chr3 142782844 142783316 -75253842 - L1PA5 LINE L1 0 6154 5682 309 282 32 138 chr3 142783431 142783778 -75253380 - L1M4 LINE L1 -1969 4177 3868 442 297 98 76 chr3 142784409 142784776 -75252382 - L1M4 LINE L1 -2327 3819 3445 475 287 73 67 chr3 142784856 142785184 -75251974 + L1ME4a LINE L1 5605 5934 -187 416 303 167 15 chr3 142786468 142786666 -75250492 - MIR SINE MIR -1 261 34 587 210 173 6 chr3 142786691 142786853 -75250305 + MER5A DNA MER1_type 1 189 0 270 242 40 18 chr3 142786861 142786949 -75250209 + MIR SINE MIR 27 115 -93 1733 151 0 78 chr3 142786960 142787305 -75249853 - AluYb8 SINE Alu 0 318 1 2885 6 0 0 chr3 142787335 142787646 -75249512 - AluYa5 SINE Alu 0 311 1 226 223 8 131 chr3 142787651 142787781 -75249377 + MIR SINE MIR 107 220 -42 21 0 0 0 chr3 142787964 142787985 -75249173 + AT_rich Low_complexity Low_complexity 1 21 0 208 169 17 17 chr3 142788435 142788494 -75248664 + GA-rich Low_complexity Low_complexity 3 61 0 304 333 38 54 chr3 142788686 142788731 -75248427 - MIR3 SINE MIR -7 201 157 3800 121 20 34 chr3 142788731 142789343 -75247815 + LTR26 LTR ERV1 1 603 0 304 333 38 54 chr3 142789343 142789483 -75247675 - MIR3 SINE MIR -51 157 19 208 333 14 0 chr3 142790565 142790634 -75246524 + L2 LINE L2 3200 3269 -3 308 213 16 0 chr3 142790920 142790981 -75246177 - L2 LINE L2 -1 3312 3251 28423 104 16 9 chr3 142791302 142797721 -75239437 + L1PA8 LINE L1 6 6480 -7 303 70 0 0 chr3 142797721 142797764 -75239394 - MADE1 DNA Mariner -37 43 1 186 43 0 0 chr3 142798133 142798156 -75239002 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 360 262 223 63 chr3 142798156 142798335 -75238823 + MIR SINE MIR 24 242 -20 641 274 96 68 chr3 142798335 142798733 -75238425 + MLT1I LTR MaLR 1 409 0 360 262 223 63 chr3 142798733 142798759 -75238399 + MIR SINE MIR 242 262 0 28 48 0 0 chr3 142798884 142798926 -75238232 + AT_rich Low_complexity Low_complexity 1 42 0 1858 209 67 74 chr3 142799222 142799777 -75237381 - MLT1H1 LTR MaLR -4 551 1 327 318 137 32 chr3 142799978 142800255 -75236903 + LTR33 LTR ERVL 48 353 -168 266 333 0 0 chr3 142800262 142800337 -75236821 + L2 LINE L2 3193 3267 -5 354 350 25 18 chr3 142801050 142801213 -75235945 + MIR3 SINE MIR 30 193 -15 876 298 12 16 chr3 142801762 142802017 -75235141 - MIR SINE MIR -1 261 8 322 299 28 28 chr3 142802624 142802768 -75234390 + (CATATA)n Simple_repeat Simple_repeat 6 149 0 1938 150 0 6 chr3 142803069 142803383 -75233775 + AluJb SINE Alu 1 312 0 23 33 0 0 chr3 142804251 142804281 -75232877 + AT_rich Low_complexity Low_complexity 1 30 0 2396 102 0 0 chr3 142805140 142805443 -75231715 - AluSg SINE Alu -7 303 1 219 170 0 0 chr3 142805891 142805938 -75231220 + (CA)n Simple_repeat Simple_repeat 2 48 0 2277 128 11 3 chr3 142806040 142806399 -75230759 - L1PB1 LINE L1 -8 6143 5782 10206 177 136 5 chr3 142806512 142810014 -75227144 - L1PBa LINE L1 -2895 3967 5 21 0 0 0 chr3 142811599 142811620 -75225538 + AT_rich Low_complexity Low_complexity 1 21 0 225 356 11 11 chr3 142812092 142812182 -75224976 - MIR3 SINE MIR -116 92 3 1475 275 62 7 chr3 142812502 142812888 -75224270 + LTR16C LTR ERVL 13 429 -62 1676 175 63 14 chr3 142812888 142813236 -75223922 - MLT1A1 LTR MaLR 0 365 1 1475 275 62 7 chr3 142813236 142813303 -75223855 + LTR16C LTR ERVL 429 491 0 483 281 86 36 chr3 142813303 142813524 -75223634 - MIR SINE MIR -18 244 13 770 156 45 84 chr3 142814144 142814323 -75222835 + MER63A DNA MER1_type 39 210 0 1083 70 7 21 chr3 142814533 142814676 -75222482 + AluY SINE Alu 1 141 -170 754 50 0 0 chr3 142814676 142814776 -75222382 + AluSg/x SINE Alu 208 307 -2 688 237 132 0 chr3 142814822 142814974 -75222184 + MER5B DNA MER1_type 1 172 -6 417 196 43 58 chr3 142815095 142815233 -75221925 + L1ME3 LINE L1 5928 6063 -99 2073 125 0 16 chr3 142815305 142815609 -75221549 - AluSq SINE Alu -14 299 1 205 282 39 51 chr3 142815683 142815761 -75221397 - MER5A DNA MER1_type -104 85 9 208 327 106 26 chr3 142815809 142815922 -75221236 - L2 LINE L2 -13 3259 3138 206 281 125 31 chr3 142815934 142816030 -75221128 - L2 LINE L2 0 3272 3168 883 316 111 22 chr3 142816132 142816591 -75220567 - L2 LINE L2 -420 2894 2395 2674 103 14 0 chr3 142818865 142819233 -75217925 + THE1C LTR MaLR 3 375 0 8920 118 68 43 chr3 142819233 142820774 -75216384 + THE1C-int LTR MaLR 1 1580 0 2785 99 8 0 chr3 142820774 142821146 -75216012 + THE1C LTR MaLR 1 375 0 826 238 59 89 chr3 142821886 142822345 -75214813 + L1M4 LINE L1 4103 4547 -1599 314 217 341 36 chr3 142822490 142822628 -75214530 + MER5A DNA MER1_type 4 183 -6 705 156 74 0 chr3 142823116 142823238 -75213920 - FLAM_C SINE Alu -1 132 2 219 103 0 0 chr3 142823276 142823315 -75213843 + (CA)n Simple_repeat Simple_repeat 1 39 0 751 169 33 28 chr3 142823503 142823683 -75213475 + MER33 DNA MER1_type 1 173 -101 398 224 66 0 chr3 142823950 142824049 -75213109 - MIR SINE MIR -58 150 45 1000 231 14 0 chr3 142825279 142825487 -75211671 - MER20 DNA MER1_type -1 218 8 350 222 7 146 chr3 142825607 142825838 -75211320 - L1ME3 LINE L1 -2 6168 5964 1721 257 115 30 chr3 142825864 142826663 -75210495 + HAL1 LINE L1 1640 2506 -1 1126 168 25 0 chr3 142827017 142827220 -75209938 - MER2 DNA MER2_type -136 209 2 412 347 26 11 chr3 142827468 142827681 -75209477 + MIR SINE MIR 3 218 -44 222 156 0 0 chr3 142827711 142827756 -75209402 + (TTA)n Simple_repeat Simple_repeat 1 45 0 1009 185 27 45 chr3 142827878 142828100 -75209058 - AluJb SINE Alu -3 309 92 238 114 0 0 chr3 142828104 142828139 -75209019 + Alu SINE Alu 35 69 -64 186 43 0 0 chr3 142828281 142828304 -75208854 + (CAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr3 142829211 142829232 -75207926 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr3 142829391 142829420 -75207738 + AT_rich Low_complexity Low_complexity 1 29 0 533 15 0 15 chr3 142829818 142829885 -75207273 + (GGAA)n Simple_repeat Simple_repeat 1 66 0 315 312 0 28 chr3 142832228 142832337 -75204821 + MIR3 SINE MIR 57 162 -46 1097 86 0 0 chr3 142832710 142832861 -75204297 - MSTD LTR MaLR -245 151 1 188 343 167 0 chr3 142833440 142833542 -75203616 - L2 LINE L2 0 3313 3195 251 353 83 32 chr3 142833730 142833982 -75203176 - L2 LINE L2 -168 3145 2881 818 210 125 44 chr3 142833983 142834326 -75202832 + L1ME2 LINE L1 5613 5983 -181 628 112 37 0 chr3 142834463 142834570 -75202588 + AluSq/x SINE Alu 1 111 -202 209 239 43 0 chr3 142835101 142835147 -75202011 - MIR SINE MIR -15 247 200 * 430 349 150 19 chr3 142835144 142835256 -75201902 - L2 LINE L2 -3 3310 3214 191 61 30 0 chr3 142835256 142835289 -75201869 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 430 349 150 19 chr3 142835289 142835549 -75201609 - L2 LINE L2 -99 3214 2889 360 241 0 0 chr3 142835557 142835636 -75201522 + AluJ/FRAM SINE Alu 221 299 -3 432 246 16 32 chr3 142835653 142835779 -75201379 - MIR SINE MIR -58 204 81 740 70 0 39 chr3 142836290 142836419 -75200739 + (GAAA)n Simple_repeat Simple_repeat 4 127 0 186 43 0 0 chr3 142837476 142837499 -75199659 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 710 210 127 0 chr3 142837679 142837836 -75199322 + MER5A DNA MER1_type 4 183 -6 264 261 0 76 chr3 142839114 142839206 -75197952 + MIR SINE MIR 29 113 -149 217 328 0 0 chr3 142839616 142839680 -75197478 + (CA)n Simple_repeat Simple_repeat 1 64 0 197 341 67 59 chr3 142839858 142839937 -75197221 - L2 LINE L2 0 3272 3190 882 227 116 14 chr3 142839937 142840153 -75197005 + MER8 DNA MER2_type 2 239 0 197 341 67 59 chr3 142840153 142840208 -75196950 - L2 LINE L2 -82 3190 3137 305 273 36 9 chr3 142840236 142840346 -75196812 + MIR SINE MIR 74 186 -76 293 180 49 0 chr3 142840597 142840658 -75196500 + MIR SINE MIR 120 183 -79 199 370 135 16 chr3 142841651 142841843 -75195315 + MIR SINE MIR 23 237 -25 328 292 0 0 chr3 142841856 142841928 -75195230 - MER91B DNA MER1_type -117 73 2 479 205 54 9 chr3 142842290 142842402 -75194756 + L2 LINE L2 3196 3312 -1 413 272 151 10 chr3 142842651 142842857 -75194301 - MIR SINE MIR 0 262 28 845 207 28 55 chr3 142844056 142844273 -75192885 + MER20 DNA MER1_type 9 219 0 341 352 38 19 chr3 142844416 142844626 -75192532 + MIR SINE MIR 48 261 -1 227 327 62 44 chr3 142845309 142845389 -75191769 - MIR3 SINE MIR -22 186 105 294 333 41 0 chr3 142845389 142845512 -75191646 - MER91A DNA MER1_type -1 195 68 313 325 8 0 chr3 142846297 142846423 -75190735 - MER58B DNA MER1_type -4 337 211 1023 141 0 0 chr3 142846582 142846724 -75190434 - AluSq/x SINE Alu -170 142 1 2304 108 0 0 chr3 142847196 142847502 -75189656 + AluSx SINE Alu 1 306 -6 684 279 19 34 chr3 142847911 142848176 -75188982 - MIR SINE MIR 0 262 2 257 366 10 10 chr3 142849480 142849581 -75187577 + MIR3 SINE MIR 97 197 -11 180 77 0 0 chr3 142849760 142849786 -75187372 + (CA)n Simple_repeat Simple_repeat 2 27 0 187 200 100 0 chr3 142850347 142850387 -75186771 + L3 LINE CR1 1526 1569 -8 301 241 6 29 chr3 142851531 142851701 -75185457 + GA-rich Low_complexity Low_complexity 2 167 0 193 263 66 13 chr3 142855428 142855504 -75181654 - MIR3 SINE MIR -14 194 115 566 301 92 5 chr3 142855720 142855926 -75181232 - MER58A DNA MER1_type 0 224 1 26 0 0 0 chr3 142856824 142856850 -75180308 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr3 142857678 142857708 -75179450 + AT_rich Low_complexity Low_complexity 1 30 0 2767 19 0 0 chr3 142857736 142858043 -75179115 - AluYa5 SINE Alu -4 307 1 493 144 14 123 chr3 142858255 142858339 -75178819 + Charlie1 DNA MER1_type 2628 2691 -70 2226 119 0 3 chr3 142858339 142858641 -75178517 - AluSx SINE Alu -11 301 1 493 144 14 123 chr3 142858641 142858702 -75178456 + Charlie1 DNA MER1_type 2691 2757 -4 407 363 24 38 chr3 142858795 142859007 -75178151 + L2 LINE L2 3062 3270 -2 210 298 0 96 chr3 142859006 142859100 -75178058 + MIR SINE MIR 166 250 -12 * 795 205 5 51 chr3 142859193 142859388 -75177770 + MER5A DNA MER1_type 1 186 -3 264 315 240 7 chr3 142859959 142860105 -75177053 - MIR SINE MIR -77 185 6 22 35 0 0 chr3 142860352 142860381 -75176777 + AT_rich Low_complexity Low_complexity 1 29 0 35 0 0 0 chr3 142860886 142860921 -75176237 + AT_rich Low_complexity Low_complexity 1 35 0 420 280 60 14 chr3 142861091 142861233 -75175925 - MIR SINE MIR -37 171 19 347 267 125 0 chr3 142861338 142861458 -75175700 - L2 LINE L2 -1 3271 3137 465 302 57 31 chr3 142861468 142861660 -75175498 + MIR3 SINE MIR 9 205 -3 191 219 0 0 chr3 142862680 142862712 -75174446 + L2 LINE L2 3203 3234 -38 1017 171 78 21 chr3 142862959 142863202 -75173956 + MER33 DNA MER1_type 1 249 -75 343 242 61 40 chr3 142864524 142864623 -75172535 + MIR3 SINE MIR 87 187 -21 191 222 0 0 chr3 142864592 142864628 -75172530 + L3 LINE CR1 1530 1565 -12 * 186 71 0 0 chr3 142867645 142867673 -75169485 + (TG)n Simple_repeat Simple_repeat 2 29 0 226 371 0 0 chr3 142868272 142868369 -75168789 + C-rich Low_complexity Low_complexity 4 100 0 193 93 0 47 chr3 142869731 142869774 -75167384 + (GGGA)n Simple_repeat Simple_repeat 3 43 0 182 366 0 0 chr3 142870216 142870287 -75166871 + L2 LINE L2 3187 3257 -15 535 272 23 102 chr3 142871034 142871339 -75165819 - MLT1K LTR MaLR -294 294 14 363 254 25 68 chr3 142871483 142871601 -75165557 + L2 LINE L2 3162 3274 -39 27 0 0 0 chr3 142871608 142871635 -75165523 + AT_rich Low_complexity Low_complexity 1 27 0 181 333 0 0 chr3 142871635 142871683 -75165475 - MIR3 SINE MIR -36 172 125 346 353 69 10 chr3 142871687 142871891 -75165267 - MIR SINE MIR -6 256 41 180 152 0 0 chr3 142872816 142872849 -75164309 + T-rich Low_complexity Low_complexity 1 33 0 232 254 15 45 chr3 142873443 142873510 -75163648 + MIR3 SINE MIR 110 174 -34 532 297 94 92 chr3 142873624 142873784 -75163374 + MLT1J LTR MaLR 2 160 -351 1088 220 0 0 chr3 142873784 142873993 -75163165 - MER3 DNA MER1_type 0 209 1 532 297 94 92 chr3 142873993 142874341 -75162817 + MLT1J LTR MaLR 160 511 0 469 305 71 10 chr3 142874637 142874834 -75162324 - MIR SINE MIR -18 244 36 425 274 11 0 chr3 142875602 142875697 -75161461 - MLT1H1 LTR MaLR -457 98 3 1278 168 46 125 chr3 142876157 142876502 -75160656 - MLT1A1 LTR MaLR -2 363 46 215 370 64 56 chr3 142876640 142877061 -75160097 - L2 LINE L2 -75 3197 2768 484 265 33 143 chr3 142877489 142877881 -75159277 - L2 LINE L2 -44 3269 2921 303 328 40 40 chr3 142878872 142879046 -75158112 - L1MC4a LINE L1 -1938 5870 5697 2010 126 7 0 chr3 142879128 142879405 -75157753 + AluSx SINE Alu 1 279 -33 371 130 0 14 chr3 142879418 142879487 -75157671 + (GGGAA)n Simple_repeat Simple_repeat 2 69 0 1921 197 10 12 chr3 142879863 142880270 -75156888 + L1MD3 LINE L1 7590 7995 0 2585 53 0 0 chr3 142880611 142880915 -75156243 + AluY SINE Alu 1 304 -7 1575 242 124 23 chr3 142881486 142881970 -75155188 + MLT1H LTR MaLR 17 549 0 403 250 26 26 chr3 142881970 142882086 -75155072 - MIR SINE MIR -102 160 45 393 333 21 47 chr3 142882718 142882910 -75154248 + L2 LINE L2 2708 2894 -420 881 197 6 17 chr3 142882919 142883097 -75154061 - FRAM SINE Alu -1 175 1 213 39 0 0 chr3 142883189 142883215 -75153943 + (CA)n Simple_repeat Simple_repeat 1 26 0 38472 44 5 1 chr3 142883299 142888742 -75148416 - L1PA5 LINE L1 -1 6153 690 338 281 10 21 chr3 142888844 142888940 -75148218 + L2 LINE L2 3219 3313 0 246 298 69 46 chr3 142889019 142889150 -75148008 - MLT1L LTR MaLR -6 609 476 249 352 19 0 chr3 142889253 142889358 -75147800 - MLT1K LTR MaLR -321 267 161 1672 200 37 59 chr3 142889917 142890322 -75146836 + MSTD LTR MaLR 1 396 0 5874 44 0 0 chr3 142890919 142891578 -75145580 - L1PA5 LINE L1 -3 6151 5493 328 337 112 39 chr3 142891980 142892392 -75144766 - L2 LINE L2 -2 3270 2829 572 313 94 0 chr3 142892481 142892682 -75144476 - L2 LINE L2 -560 2754 2535 905 300 43 20 chr3 142892912 142893259 -75143899 + LTR16C LTR ERVL 134 488 -3 1843 154 42 88 chr3 142893851 142894259 -75142899 - MLT1B LTR MaLR 0 390 2 6684 85 19 5 chr3 142894493 142896395 -75140763 - L1PA14 LINE L1 0 6161 4246 189 0 0 0 chr3 142896460 142896481 -75140677 + (A)n Simple_repeat Simple_repeat 1 21 0 1804 158 20 0 chr3 142896594 142896891 -75140267 - L1PA14 LINE L1 -1886 4260 3958 344 267 60 9 chr3 142897964 142898080 -75139078 - MIR SINE MIR -59 203 82 185 148 0 0 chr3 142899234 142899261 -75137897 + L3 LINE CR1 437 463 -1114 1088 263 71 33 chr3 142899824 142900376 -75136782 + HAL1b LINE L1 43 615 -733 211 301 40 88 chr3 142902156 142902389 -75134769 + MIR3 SINE MIR 8 225 -37 2237 171 5 16 chr3 142902596 142902965 -75134193 - MLT1A1 LTR MaLR 0 365 1 381 282 39 0 chr3 142903197 142903300 -75133858 - MER94 DNA DNA -21 113 7 430 271 99 33 chr3 142903475 142903626 -75133532 - MER117 DNA MER1_type -34 163 3 216 350 10 21 chr3 142904091 142904188 -75132970 - MER91A DNA MER1_type -100 96 1 2692 145 144 33 chr3 142904353 142904951 -75132207 + MER39 LTR ERV1 1 707 0 423 0 0 0 chr3 142905090 142905137 -75132021 + (CA)n Simple_repeat Simple_repeat 2 48 0 269 252 37 93 chr3 142906829 142906936 -75130222 - MIR SINE MIR -23 239 139 267 252 176 8 chr3 142907068 142907187 -75129971 - MIR SINE MIR -3 259 121 3533 58 2 0 chr3 142907230 142907647 -75129511 + L1PA5 LINE L1 5736 6153 -1 258 311 0 0 chr3 142908360 142908434 -75128724 + (TATG)n Simple_repeat Simple_repeat 2 75 0 261 314 89 8 chr3 142908661 142908785 -75128373 - MIR SINE MIR -50 212 79 240 308 0 31 chr3 142910449 142910514 -75126644 - MIR SINE MIR -179 83 21 5002 136 34 6 chr3 142911294 142912093 -75125065 - L1PA16 LINE L1 -9 6157 5337 482 251 101 41 chr3 142913227 142913654 -75123504 + L1ME4a LINE L1 5481 5946 -175 191 280 0 0 chr3 142914047 142914097 -75123061 + L2 LINE L2 3264 3313 0 2187 157 30 34 chr3 142914833 142915394 -75121764 + MLT2A2 LTR ERVL 1 554 0 2462 48 3 0 chr3 142915524 142915813 -75121345 - AluY SINE Alu -21 290 1 1968 142 0 39 chr3 142915977 142916287 -75120871 - AluSx SINE Alu -14 298 1 4125 286 86 20 chr3 142916473 142918382 -75118776 + L2 LINE L2 1273 3308 -5 260 227 0 30 chr3 142918383 142918449 -75118709 + GA-rich Low_complexity Low_complexity 1 64 0 401 252 36 0 chr3 142918476 142918587 -75118571 + MIR3 SINE MIR 91 205 -3 198 352 46 19 chr3 142919709 142919817 -75117341 + L2 LINE L2 2949 3059 -213 21 36 0 0 chr3 142919975 142920003 -75117155 + AT_rich Low_complexity Low_complexity 1 28 0 3665 220 28 3 chr3 142970343 142971529 -75065629 - L1PA13 LINE L1 -4206 2591 1371 262 315 15 8 chr3 142971674 142971804 -75065354 - L1PA13 LINE L1 -6176 611 481 363 267 0 11 chr3 142972212 142972302 -75064856 - MIR SINE MIR -117 145 57 * 442 168 45 206 chr3 142972301 142972399 -75064759 + MER5A DNA MER1_type 59 125 -64 2016 149 0 0 chr3 142972399 142972681 -75064477 - AluSx SINE Alu -30 282 1 442 168 45 206 chr3 142972681 142972737 -75064421 + MER5A DNA MER1_type 125 188 -1 1375 118 37 8 chr3 142972823 142973068 -75064090 + L1MA9 LINE L1 6061 6312 0 303 279 0 51 chr3 142973282 142973361 -75063797 - MIR SINE MIR -87 121 47 234 139 0 0 chr3 142974744 142974780 -75062378 + MADE1 DNA Mariner 4 39 -41 6260 94 14 0 chr3 142974780 142976235 -75060923 - L1PA8A LINE L1 -1 6130 4667 8681 118 1 0 chr3 142976235 142977590 -75059568 + L1P LINE L1 3262 4617 -1529 416 287 84 78 chr3 142978369 142978867 -75058291 + MLT1J LTR MaLR 7 507 -4 180 0 0 0 chr3 142979156 142979176 -75057982 + (TCC)n Simple_repeat Simple_repeat 2 21 0 242 224 30 0 chr3 142979746 142979813 -75057345 + LTR33 LTR ERVL 399 467 -54 384 250 81 0 chr3 142979869 142980029 -75057129 - MER114 LTR ERV 0 648 476 23 0 0 0 chr3 142980030 142980053 -75057105 + AT_rich Low_complexity Low_complexity 1 23 0 349 209 22 0 chr3 142980234 142980325 -75056833 + L1M4 LINE L1 2377 2469 -3677 22 0 0 0 chr3 142980374 142980396 -75056762 + AT_rich Low_complexity Low_complexity 1 22 0 486 218 23 0 chr3 142980396 142980529 -75056629 + L1M4 LINE L1 2473 2608 -3538 601 272 61 4 chr3 142980818 142981046 -75056112 + L1ME3A LINE L1 5916 6156 -14 7692 28 0 0 chr3 142981239 142982464 -75054694 + L1PA3 LINE L1 4929 6155 0 344 292 42 68 chr3 142982539 142982775 -75054383 + MLT1H LTR MaLR 23 252 -297 238 217 43 33 chr3 142982894 142982986 -75054172 + MLT1H LTR MaLR 450 542 0 1362 201 84 31 chr3 142983118 142983566 -75053592 + MLT2B2 LTR ERVL 3 514 -1 651 290 35 10 chr3 142984483 142984683 -75052475 - MIR SINE MIR -10 252 48 263 268 180 4 chr3 142985238 142985413 -75051745 - MIR SINE MIR -4 258 40 564 328 36 42 chr3 142986141 142986685 -75050473 + L1ME3A LINE L1 5353 5890 -280 292 341 38 19 chr3 142987827 142988091 -75049067 + L1ME3A LINE L1 5622 5890 -280 288 222 16 32 chr3 142990476 142990602 -75046556 + L1MB8 LINE L1 6044 6167 -11 27 0 0 0 chr3 142990620 142990647 -75046511 + AT_rich Low_complexity Low_complexity 1 27 0 359 299 65 37 chr3 142990711 142990925 -75046233 + MIR SINE MIR 37 256 -6 409 278 101 0 chr3 142991913 142992122 -75045036 + L1ME4a LINE L1 5575 5804 -317 40214 37 22 4 chr3 142992210 142997054 -75040104 + L1PA3 LINE L1 42 5023 -1132 2814 6 0 19 chr3 142997054 142997371 -75039787 + AluYa5 SINE Alu 1 311 0 40214 37 22 4 chr3 142997371 142998523 -75038635 + L1PA3 LINE L1 5023 6152 -3 22 35 0 0 chr3 142998635 142998664 -75038494 + AT_rich Low_complexity Low_complexity 1 29 0 249 57 0 0 chr3 142999257 142999292 -75037866 + (A)n Simple_repeat Simple_repeat 1 35 0 378 276 70 19 chr3 142999326 142999482 -75037676 + L1ME4a LINE L1 5957 6120 -1 1850 102 0 28 chr3 142999501 142999777 -75037381 + AluSc SINE Alu 34 302 0 2093 110 3 7 chr3 142999778 143000096 -75037062 + AluSg SINE Alu 1 317 0 410 297 113 50 chr3 143000445 143000558 -75036600 - L2 LINE L2 -74 3239 3135 1077 164 27 53 chr3 143000558 143000783 -75036375 - MER20 DNA MER1_type 0 219 1 410 297 113 50 chr3 143000783 143001049 -75036109 - L2 LINE L2 -178 3135 2836 1090 226 41 78 chr3 143001210 143001670 -75035488 + MLT1J1 LTR MaLR 2 444 -2 189 107 0 0 chr3 143002448 143002476 -75034682 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 354 208 59 20 chr3 143002493 143002594 -75034564 + MER112 DNA MER1_type 77 181 -79 2417 202 107 17 chr3 143002603 143003349 -75033809 + L1ME2 LINE L1 5301 6113 -51 442 295 36 14 chr3 143004681 143004820 -75032338 + MIR SINE MIR 70 211 -51 378 209 76 29 chr3 143004920 143005025 -75032133 - L2 LINE L2 -1 3312 3203 1177 251 27 33 chr3 143005133 143005467 -75031691 + LTR16A LTR ERVL 97 428 -22 2010 153 11 27 chr3 143005467 143005833 -75031325 + MLT2D LTR ERVL 1 360 -54 279 113 0 0 chr3 143005854 143005907 -75031251 + (TC)n Simple_repeat Simple_repeat 1 53 0 351 0 0 0 chr3 143005907 143005946 -75031212 + (TG)n Simple_repeat Simple_repeat 2 40 0 1207 247 88 0 chr3 143006062 143006345 -75030813 + MER45B DNA AcHobo 1 308 -732 243 276 0 0 chr3 143006342 143006400 -75030758 + MER45B DNA AcHobo 251 308 -732 * 3290 179 34 43 chr3 143006397 143006763 -75030395 + MER45B DNA AcHobo 251 619 -962 3459 61 5 2 chr3 143006763 143007208 -75029950 + L1PA7 LINE L1 5706 6151 -3 3290 179 34 43 chr3 143007208 143007638 -75029520 + MER45B DNA AcHobo 619 1040 0 2754 211 43 34 chr3 143008042 143008716 -75028442 + L1ME1 LINE L1 4865 5526 -652 2214 102 10 0 chr3 143008716 143009010 -75028148 - AluSq SINE Alu -16 297 1 2754 211 43 34 chr3 143009010 143009668 -75027490 + L1ME1 LINE L1 5526 6177 -1 423 271 33 55 chr3 143010134 143010315 -75026843 + MIR3 SINE MIR 1 177 -31 222 37 0 0 chr3 143010749 143010776 -75026382 + (TC)n Simple_repeat Simple_repeat 1 27 0 * 267 31 0 0 chr3 143010775 143010807 -75026351 + (CA)n Simple_repeat Simple_repeat 1 32 0 224 318 15 15 chr3 143011199 143011265 -75025893 - MIR SINE MIR -124 84 19 1305 253 140 4 chr3 143011409 143011890 -75025268 + MLT1G3 LTR MaLR 5 498 -32 745 62 2 0 chr3 143011887 143011994 -75025164 - L1PA4 LINE L1 -63 6092 5984 * 395 20 0 0 chr3 143011992 143012041 -75025117 + L1PA2 LINE L1 6104 6152 -3 328 149 14 40 chr3 143012222 143012296 -75024862 + MLT1G3 LTR MaLR 518 589 -1 1293 188 136 30 chr3 143012919 143013249 -75023909 + MLT1A1 LTR MaLR 1 365 0 181 407 44 0 chr3 143013338 143013429 -75023729 - L2 LINE L2 -25 3247 3153 337 321 79 6 chr3 143013545 143013710 -75023448 + MIR SINE MIR 76 252 -10 189 255 64 0 chr3 143013906 143013953 -75023205 - MIR3 SINE MIR -36 172 123 1634 220 153 59 chr3 143014282 143014772 -75022386 + MLT1H LTR MaLR 14 549 0 264 271 105 15 chr3 143015408 143015541 -75021617 + MLT1K LTR MaLR 432 576 -12 273 359 95 29 chr3 143015636 143015984 -75021174 + LTR16A LTR ERVL 1 371 -79 189 0 0 0 chr3 143016442 143016463 -75020695 + (T)n Simple_repeat Simple_repeat 1 21 0 390 264 343 14 chr3 143016872 143017239 -75019919 + MLT1H LTR MaLR 99 587 -8 613 317 61 7 chr3 143017276 143017656 -75019502 + L1MC4a LINE L1 5500 5715 -406 263 301 0 14 chr3 143017755 143017828 -75019330 - MLT1I LTR MaLR -8 401 330 323 259 0 24 chr3 143018228 143018313 -75018845 - MLT1I LTR MaLR -228 181 99 325 231 103 92 chr3 143018446 143018641 -75018517 - MIR SINE MIR -46 216 20 373 338 83 23 chr3 143018803 143018936 -75018222 + L2 LINE L2 3123 3263 -9 588 29 0 0 chr3 143018937 143019007 -75018151 + (TGGA)n Simple_repeat Simple_repeat 2 71 0 621 203 169 0 chr3 143019077 143019225 -75017933 + MER5A DNA MER1_type 9 181 -8 280 290 107 8 chr3 143019737 143019868 -75017290 - MIR SINE MIR -56 206 63 253 368 97 9 chr3 143020458 143020572 -75016586 - MIR SINE MIR -65 143 20 1808 301 86 23 chr3 143020613 143021589 -75015569 + L2 LINE L2 2144 3190 -123 794 229 213 0 chr3 143021655 143021838 -75015320 - MER58A DNA MER1_type -1 223 2 28664 74 6 85 chr3 143022158 143026633 -75010525 - L1P LINE L1 -2026 4120 1 3937 148 16 25 chr3 143026751 143027435 -75009723 - L1MA8 LINE L1 0 6291 5614 761 260 27 12 chr3 143027738 143028007 -75009151 + L1ME1 LINE L1 5581 5852 -314 5282 193 59 6 chr3 143029624 143030774 -75006384 + L1M1 LINE L1 23 1233 -6332 305 196 0 0 chr3 143030952 143031008 -75006150 - L1PA13 LINE L1 -5361 1426 1371 289 315 15 8 chr3 143031153 143031283 -75005875 - L1PA13 LINE L1 -6176 611 481 356 267 0 11 chr3 143031692 143031782 -75005376 - MIR SINE MIR -117 145 57 * 430 202 83 0 chr3 143031781 143031865 -75005293 + MER5A DNA MER1_type 59 149 -40 2036 136 0 0 chr3 143031881 143032161 -75004997 - AluSx SINE Alu -32 280 1 3127 156 7 24 chr3 143032162 143032713 -75004445 - MST-int LTR MaLR -1108 543 2 2578 105 11 11 chr3 143032718 143033070 -75004088 - THE1A LTR MaLR -3 352 1 27 0 0 0 chr3 143034150 143034177 -75002981 + AT_rich Low_complexity Low_complexity 1 27 0 822 251 50 0 chr3 143034213 143034392 -75002766 + MER5A DNA MER1_type 2 189 0 196 273 0 0 chr3 143035385 143035429 -75001729 + MIR SINE MIR 213 256 -6 1000 273 18 24 chr3 143035531 143035865 -75001293 - L1ME4a LINE L1 -239 5882 5551 242 301 0 14 chr3 143036159 143036232 -75000926 + Charlie4 DNA MER1_type 1885 1956 -5 1779 157 3 26 chr3 143037428 143037734 -74999424 + AluJb SINE Alu 5 303 -9 1923 249 34 68 chr3 143039154 143039834 -74997324 - MER45R DNA AcHobo -813 768 112 2217 57 0 0 chr3 143039837 143040099 -74997059 + AluY SINE Alu 1 262 -49 4451 126 33 12 chr3 143040099 143040550 -74996608 + L1MA3 LINE L1 5318 5791 -514 201 39 0 0 chr3 143040550 143040576 -74996582 + (TG)n Simple_repeat Simple_repeat 2 27 0 4451 126 33 12 chr3 143040576 143040852 -74996306 + L1MA3 LINE L1 5791 6060 -245 2211 258 82 2 chr3 143041894 143042440 -74994718 - MLT1G1 LTR MaLR -5 590 1 195 42 0 0 chr3 143042476 143042500 -74994658 + (TG)n Simple_repeat Simple_repeat 1 24 0 1492 202 79 47 chr3 143043182 143043588 -74993570 + MLT1C LTR MaLR 34 452 -15 214 234 31 47 chr3 143043596 143043660 -74993498 + MIR SINE MIR 89 151 -111 1718 263 62 23 chr3 143043679 143044254 -74992904 + MLT1G LTR MaLR 15 590 0 15324 44 10 3 chr3 143044431 143046349 -74990809 + L1P LINE L1 3119 5049 -1097 6815 83 4 16 chr3 143046512 143048055 -74989103 + L1PA7 LINE L1 4613 6148 -6 6742 152 29 30 chr3 143048055 143049313 -74987845 - Tigger1 DNA MER2_type -1158 1260 4 589 226 148 26 chr3 143049820 143049975 -74987183 - MER5A DNA MER1_type -6 183 10 1618 201 133 27 chr3 143051559 143051971 -74985187 - LTR16A1 LTR ERVL -1 456 1 358 271 16 23 chr3 143052280 143052409 -74984749 - Zaphod DNA AcHobo -6 4025 3898 225 367 92 0 chr3 143054320 143054440 -74982718 + L2 LINE L2 2939 3069 -203 200 200 0 0 chr3 143054723 143054758 -74982400 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 240 368 77 0 chr3 143054759 143054876 -74982282 - L2 LINE L2 -1 3271 3146 255 320 29 10 chr3 143055401 143055504 -74981654 - MIR SINE MIR -1 261 157 2037 177 98 38 chr3 143055507 143055958 -74981200 + MLT2B1 LTR ERVL 1 478 -42 400 198 11 29 chr3 143055980 143056256 -74980902 + (TA)n Simple_repeat Simple_repeat 1 270 0 1556 106 0 9 chr3 143056495 143056713 -74980445 + AluSq SINE Alu 84 299 -14 373 196 33 43 chr3 143056887 143056979 -74980179 - MLT1H LTR MaLR -2 547 457 245 238 98 116 chr3 143057086 143057250 -74979908 - MLT1H LTR MaLR -251 298 138 240 267 27 104 chr3 143057406 143057627 -74979531 - L1ME LINE L1 -230 5891 5687 384 22 0 0 chr3 143057638 143057683 -74979475 + (TG)n Simple_repeat Simple_repeat 1 45 0 355 98 20 0 chr3 143057724 143057775 -74979383 - MER20 DNA MER1_type -47 172 121 1131 145 146 5 chr3 143057776 143058181 -74978977 + L1P5 LINE L1 5201 5660 -491 30 69 0 0 chr3 143059284 143059342 -74977816 + AT_rich Low_complexity Low_complexity 1 58 0 1416 143 35 16 chr3 143059598 143059913 -74977245 - L1P LINE L1 -5823 323 3 661 248 84 42 chr3 143060741 143060979 -74976179 - MER112 DNA MER1_type -12 248 1 3877 135 15 10 chr3 143061555 143062148 -74975010 + L1PB2 LINE L1 5544 6139 -12 373 247 71 63 chr3 143062371 143062643 -74974515 - L1MEd LINE L1 -4872 1247 1074 906 207 54 76 chr3 143062665 143062979 -74974179 - L1ME3 LINE L1 -8 6154 5848 300 328 157 0 chr3 143064129 143064263 -74972895 - MIR3 SINE MIR -18 190 36 2127 112 0 7 chr3 143065994 143066300 -74970858 - AluY SINE Alu 0 311 1 263 235 59 24 chr3 143066343 143066428 -74970730 - MIR3 SINE MIR -8 200 113 8381 48 5 0 chr3 143066529 143067571 -74969587 - L1P LINE L1 -3983 2163 1117 766 197 8 0 chr3 143067970 143068097 -74969061 - FLAM_A SINE Alu -5 128 1 29 0 0 0 chr3 143068361 143068390 -74968768 + AT_rich Low_complexity Low_complexity 1 29 0 806 179 0 8 chr3 143068390 143068513 -74968645 - FLAM_C SINE Alu -19 124 3 2258 92 0 10 chr3 143069923 143070253 -74966905 + AluY SINE Alu 1 311 0 2629 94 8 13 chr3 143072340 143072714 -74964444 - L1PA13 LINE L1 -225 5938 5567 970 211 75 4 chr3 143072884 143073112 -74964046 - MER58 DNA MER1_type -66 275 32 311 271 89 16 chr3 143073758 143073878 -74963280 - MIR SINE MIR -75 187 55 316 204 148 0 chr3 143074062 143074150 -74963008 - MIR SINE MIR -56 152 52 559 218 71 25 chr3 143074572 143074769 -74962389 - AluSc SINE Alu 0 309 104 1859 176 46 65 chr3 143075176 143075338 -74961820 - Charlie1 DNA MER1_type 0 2761 2597 2113 114 7 16 chr3 143075338 143075645 -74961513 + AluSx SINE Alu 1 304 -8 1859 176 46 65 chr3 143075645 143075918 -74961240 - Charlie1 DNA MER1_type -164 2597 2335 1085 79 0 7 chr3 143075918 143076058 -74961100 + MER85 DNA T2_type 1 139 0 1859 176 46 65 chr3 143076058 143076143 -74961015 - Charlie1 DNA MER1_type -426 2335 2250 228 81 0 0 chr3 143076257 143076294 -74960864 + L1MA8 LINE L1 6251 6287 -4 2214 120 0 0 chr3 143076390 143076699 -74960459 + AluSx SINE Alu 3 311 -1 536 278 47 11 chr3 143076755 143076946 -74960212 + MIR SINE MIR 65 262 0 400 172 23 11 chr3 143078843 143078930 -74958228 - L1PA13 LINE L1 -5 6158 6071 937 36 0 18 chr3 143080063 143080175 -74956983 + L1PA10 LINE L1 6054 6163 -5 355 203 0 0 chr3 143080885 143080949 -74956209 + MLT1L LTR MaLR 548 611 -4 409 186 93 12 chr3 143080958 143081044 -74956114 + L2 LINE L2 3180 3272 0 1310 261 124 33 chr3 143081944 143082427 -74954731 - MLT1G LTR MaLR -63 527 1 1586 266 53 11 chr3 143082454 143083002 -74954156 + L2 LINE L2 2507 3078 -235 1128 174 49 72 chr3 143083788 143084093 -74953065 - AluJo SINE Alu -3 299 2 181 262 49 0 chr3 143084471 143084532 -74952626 - L2 LINE L2 -4 3309 3246 1677 180 337 14 chr3 143084715 143085288 -74951870 + LTR50 LTR ERVL 1 758 -37 528 210 76 22 chr3 143085288 143085512 -74951646 + L1M3 LINE L1 5495 5730 -453 2286 104 3 0 chr3 143085865 143086163 -74950995 + AluSx SINE Alu 1 299 -13 585 185 20 40 chr3 143086502 143086653 -74950505 - MER53 DNA DNA 0 189 42 993 191 36 9 chr3 143086658 143086878 -74950280 + AluJo SINE Alu 6 231 -81 431 228 8 41 chr3 143087183 143087306 -74949852 + MLT1J2 LTR MaLR 330 448 -2 422 219 59 34 chr3 143088112 143088231 -74948927 + MER112 DNA MER1_type 60 181 -79 2745 198 108 19 chr3 143088240 143088992 -74948166 + L1ME2 LINE L1 5301 6119 -45 435 295 36 14 chr3 143090319 143090458 -74946700 + MIR SINE MIR 70 211 -51 371 209 76 29 chr3 143090558 143090663 -74946495 - L2 LINE L2 -1 3312 3203 1265 254 27 33 chr3 143090771 143091105 -74946053 + LTR16A LTR ERVL 97 428 -22 2176 153 11 27 chr3 143091105 143091471 -74945687 + MLT2D LTR ERVL 1 360 -54 279 113 0 0 chr3 143091492 143091545 -74945613 + (TC)n Simple_repeat Simple_repeat 1 53 0 351 0 0 0 chr3 143091545 143091584 -74945574 + (TG)n Simple_repeat Simple_repeat 2 40 0 1311 240 88 0 chr3 143091700 143091983 -74945175 + MER45B DNA AcHobo 1 308 -732 263 276 0 0 chr3 143091980 143092038 -74945120 + MER45B DNA AcHobo 251 308 -732 * 3624 182 33 41 chr3 143092035 143092401 -74944757 + MER45B DNA AcHobo 251 619 -962 3694 61 5 2 chr3 143092401 143092846 -74944312 + L1PA7 LINE L1 5706 6151 -3 3624 182 33 41 chr3 143092846 143093276 -74943882 + MER45B DNA AcHobo 619 1040 0 3064 211 43 34 chr3 143093680 143094354 -74942804 + L1ME1 LINE L1 4865 5526 -652 2217 102 10 0 chr3 143094354 143094648 -74942510 - AluSq SINE Alu -16 297 1 3064 211 43 34 chr3 143094648 143095306 -74941852 + L1ME1 LINE L1 5526 6177 -1 425 271 33 55 chr3 143095772 143095953 -74941205 + MIR3 SINE MIR 1 177 -31 222 37 0 0 chr3 143096386 143096413 -74940745 + (TC)n Simple_repeat Simple_repeat 1 27 0 * 267 31 0 0 chr3 143096412 143096444 -74940714 + (CA)n Simple_repeat Simple_repeat 1 32 0 228 318 15 15 chr3 143096836 143096902 -74940256 - MIR SINE MIR -124 84 19 1305 253 140 4 chr3 143097046 143097527 -74939631 + MLT1G3 LTR MaLR 5 498 -32 761 60 0 0 chr3 143097527 143097627 -74939531 - L1PA4 LINE L1 -66 6089 5990 395 20 0 0 chr3 143097628 143097677 -74939481 + L1PA2 LINE L1 6104 6152 -3 328 149 14 40 chr3 143097858 143097932 -74939226 + MLT1G3 LTR MaLR 518 589 -1 1293 188 136 30 chr3 143098555 143098885 -74938273 + MLT1A1 LTR MaLR 1 365 0 181 407 44 0 chr3 143098974 143099065 -74938093 - L2 LINE L2 -25 3247 3153 337 321 79 6 chr3 143099181 143099346 -74937812 + MIR SINE MIR 76 252 -10 189 255 64 0 chr3 143099542 143099589 -74937569 - MIR3 SINE MIR -36 172 123 1651 222 151 59 chr3 143099918 143100409 -74936749 + MLT1H LTR MaLR 14 549 0 264 271 105 15 chr3 143101045 143101178 -74935980 + MLT1K LTR MaLR 432 576 -12 273 359 95 29 chr3 143101273 143101621 -74935537 + LTR16A LTR ERVL 1 371 -79 189 0 0 0 chr3 143102079 143102100 -74935058 + (T)n Simple_repeat Simple_repeat 1 21 0 390 264 343 14 chr3 143102509 143102876 -74934282 + MLT1H LTR MaLR 99 587 -8 613 317 61 7 chr3 143102913 143103293 -74933865 + L1MC4a LINE L1 5500 5715 -406 263 301 0 14 chr3 143103392 143103465 -74933693 - MLT1I LTR MaLR -8 401 330 323 259 0 24 chr3 143103865 143103950 -74933208 - MLT1I LTR MaLR -228 181 99 325 231 103 92 chr3 143104083 143104278 -74932880 - MIR SINE MIR -46 216 20 373 338 83 23 chr3 143104440 143104573 -74932585 + L2 LINE L2 3123 3263 -9 588 29 0 0 chr3 143104574 143104644 -74932514 + (TGGA)n Simple_repeat Simple_repeat 2 71 0 621 203 169 0 chr3 143104714 143104862 -74932296 + MER5A DNA MER1_type 9 181 -8 280 290 107 8 chr3 143105374 143105505 -74931653 - MIR SINE MIR -56 206 63 253 368 97 9 chr3 143106095 143106209 -74930949 - MIR SINE MIR -65 143 20 1808 301 86 23 chr3 143106250 143107226 -74929932 + L2 LINE L2 2144 3190 -123 831 224 213 0 chr3 143107292 143107475 -74929683 - MER58A DNA MER1_type -1 223 2 22 56 0 0 chr3 143107971 143108007 -74929151 + AT_rich Low_complexity Low_complexity 1 36 0 282 29 0 0 chr3 143108639 143108674 -74928484 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 360 316 90 8 chr3 143109646 143109779 -74927379 + MIR SINE MIR 49 192 -70 826 296 111 31 chr3 143110414 143110839 -74926319 - L2 LINE L2 0 3313 2855 522 222 178 17 chr3 143110850 143110997 -74926161 - MER5A DNA MER1_type -7 182 4 509 296 142 3 chr3 143111284 143111508 -74925650 + MIR SINE MIR 9 256 -6 502 278 106 7 chr3 143111687 143111838 -74925320 + MIR3 SINE MIR 42 207 -1 32 43 0 0 chr3 143112355 143112401 -74924757 + AT_rich Low_complexity Low_complexity 1 46 0 685 216 8 0 chr3 143113864 143113998 -74923160 + FRAM SINE Alu 5 139 -37 189 0 0 0 chr3 143114002 143114023 -74923135 + (TA)n Simple_repeat Simple_repeat 2 22 0 244 336 16 0 chr3 143114034 143114156 -74923002 + L1M2 LINE L1 40 163 -6686 259 353 25 22 chr3 143114159 143114519 -74922639 + L1PA12 LINE L1 233 593 -6988 276 299 92 92 chr3 143114859 143115076 -74922082 + L1M2 LINE L1 796 1012 -5837 4095 171 60 8 chr3 143115412 143116273 -74920885 + L1PA12 LINE L1 2000 2905 -4679 1195 95 28 28 chr3 143117788 143117999 -74919159 + L1PA12 LINE L1 2897 3107 -4477 3443 124 46 4 chr3 143117999 143118541 -74918617 + L1PA16 LINE L1 5587 6151 -15 461 312 14 22 chr3 143119192 143119330 -74917828 + MER5A DNA MER1_type 51 187 -2 317 245 170 41 chr3 143119870 143120017 -74917141 + MER117 DNA MER1_type 31 196 -1 649 259 22 43 chr3 143121303 143121488 -74915670 - MER91B DNA MER1_type -9 181 1 201 191 0 64 chr3 143121953 143122000 -74915158 - L2 LINE L2 -74 3198 3155 1310 124 49 4 chr3 143122012 143122237 -74914921 + Charlie5 DNA MER1_type 6 240 -2372 358 323 8 53 chr3 143124278 143124411 -74912747 + MIR SINE MIR 21 147 -61 218 374 17 43 chr3 143125035 143125150 -74912008 + MIR SINE MIR 23 134 -74 253 294 140 28 chr3 143125620 143125763 -74911395 + MIR SINE MIR 48 206 -56 199 295 82 0 chr3 143125957 143126018 -74911140 + L3 LINE CR1 1231 1296 -281 800 275 52 8 chr3 143126080 143126331 -74910827 + MIR SINE MIR 1 262 0 218 283 10 50 chr3 143126375 143126474 -74910684 + L3 LINE CR1 1329 1423 -154 225 0 0 0 chr3 143126785 143126810 -74910348 + (TG)n Simple_repeat Simple_repeat 1 25 0 337 248 181 19 chr3 143127082 143127187 -74909971 - L2 LINE L2 0 3313 3192 1286 184 45 16 chr3 143127193 143127503 -74909655 - MER33 DNA MER1_type -4 320 2 260 234 143 0 chr3 143127580 143127657 -74909501 + MER63 DNA MER1_type 1 714 -122 683 158 93 148 chr3 143128021 143128332 -74908826 - L1MA8 LINE L1 -6 6285 5992 440 231 0 0 chr3 143129201 143129309 -74907849 - MER53 DNA DNA -81 108 1 201 349 58 0 chr3 143129566 143129652 -74907506 - MIR SINE MIR -18 244 154 1631 179 15 9 chr3 143129679 143130019 -74907139 + L1MC3 LINE L1 7443 7784 -1 382 281 88 9 chr3 143130080 143130194 -74906964 - MIR SINE MIR -115 147 25 334 234 52 0 chr3 143131582 143131659 -74905499 - MIR SINE MIR -1 261 181 1417 232 37 53 chr3 143132244 143132679 -74904479 + MER74A LTR ERVL 1 428 -130 710 119 30 22 chr3 143132681 143132815 -74904343 + Ricksha DNA DNA 6 140 -3106 * 6696 140 24 19 chr3 143132794 143133998 -74903160 + Ricksha DNA DNA 1710 2919 -327 1246 51 6 0 chr3 143134009 143134167 -74902991 - L1PA5 LINE L1 -8 6146 5988 1093 127 80 0 chr3 143134198 143134411 -74902747 + Ricksha DNA DNA 2514 2743 -111 858 167 0 0 chr3 143134421 143134547 -74902611 + FLAM_C SINE Alu 1 126 -17 1317 272 45 24 chr3 143134761 143135180 -74901978 - LTR16C LTR ERVL -2 489 62 357 339 55 6 chr3 143135795 143135960 -74901198 + MIR SINE MIR 20 192 -70 1471 227 142 25 chr3 143137025 143137505 -74899653 + MLT1H LTR MaLR 4 539 -10 302 265 77 53 chr3 143137846 143138016 -74899142 + L2 LINE L2 1805 1978 -1336 335 308 56 0 chr3 143138316 143138423 -74898735 + MIR SINE MIR 30 142 -66 322 248 8 85 chr3 143138434 143138475 -74898683 + L2 LINE L2 3191 3234 -79 2377 100 0 0 chr3 143138475 143138775 -74898383 - AluSq SINE Alu -13 300 1 322 248 8 85 chr3 143138775 143138862 -74898296 + L2 LINE L2 3234 3309 -4 484 265 43 68 chr3 143139063 143139225 -74897933 - MER5A DNA MER1_type -4 185 28 516 243 227 16 chr3 143140271 143140456 -74896702 - MER58A DNA MER1_type 0 224 1 1019 269 72 25 chr3 143140478 143140883 -74896275 + LTR16A LTR ERVL 21 444 -6 274 305 13 93 chr3 143141144 143141295 -74895863 - MER5A DNA MER1_type -44 145 7 279 0 0 0 chr3 143141391 143141422 -74895736 + (CA)n Simple_repeat Simple_repeat 2 32 0 375 273 29 21 chr3 143141631 143141822 -74895336 - Charlie8 DNA MER1_type -2180 237 85 22 0 0 0 chr3 143142530 143142552 -74894606 + AT_rich Low_complexity Low_complexity 1 22 0 258 310 147 0 chr3 143142618 143142747 -74894411 + MIR3 SINE MIR 42 189 -19 422 284 119 46 chr3 143142766 143143094 -74894064 - MLT1K LTR MaLR -5 583 232 1009 193 19 28 chr3 143144791 143145004 -74892154 + MER58A DNA MER1_type 10 220 -4 358 247 11 0 chr3 143145793 143145882 -74891276 - MER103 DNA DNA -49 117 28 248 250 0 0 chr3 143146118 143146182 -74890976 - MLT1I LTR MaLR -263 146 83 497 229 59 0 chr3 143147260 143147413 -74889745 + MER103 DNA DNA 3 164 -2 25 31 0 0 chr3 143147651 143147683 -74889475 + AT_rich Low_complexity Low_complexity 1 32 0 514 259 152 19 chr3 143147955 143148113 -74889045 - MER5A DNA MER1_type -2 187 9 1362 174 123 0 chr3 143149883 143150159 -74886999 + MER1B DNA MER1_type 30 339 0 1707 75 0 4 chr3 143150209 143150437 -74886721 + L1PA7 LINE L1 5925 6151 -3 245 258 26 179 chr3 143152289 143152429 -74884729 - MER5A DNA MER1_type -3 186 81 1904 142 0 4 chr3 143152429 143152704 -74884454 - AluSg SINE Alu -36 274 1 245 258 26 179 chr3 143152704 143152753 -74884405 - MER5A DNA MER1_type -108 81 26 535 277 168 0 chr3 143153324 143153479 -74883679 - MER5A DNA MER1_type 0 189 9 390 318 116 12 chr3 143153504 143153677 -74883481 + MIR SINE MIR 31 221 -41 826 247 39 17 chr3 143153862 143154093 -74883065 + MLT1D LTR MaLR 206 441 -64 548 284 37 0 chr3 143154169 143154303 -74882855 + L2 LINE L2 3175 3313 0 620 194 43 0 chr3 143154648 143154787 -74882371 + MER5A DNA MER1_type 8 152 -37 1137 127 0 69 chr3 143154787 143154976 -74882182 + AluJo SINE Alu 1 176 -136 1744 172 64 0 chr3 143155172 143155515 -74881643 + MLT1A1 LTR MaLR 1 365 0 331 322 81 29 chr3 143155568 143155742 -74881416 + L1MC5 LINE L1 7743 7925 -36 2005 145 0 0 chr3 143155749 143156032 -74881126 + AluSx SINE Alu 1 283 -29 263 168 53 11 chr3 143156037 143156132 -74881026 + (TA)n Simple_repeat Simple_repeat 2 100 0 251 144 27 57 chr3 143156212 143156521 -74880637 + (TATAA)n Simple_repeat Simple_repeat 1 299 0 233 80 86 69 chr3 143156492 143156667 -74880491 + (TA)n Simple_repeat Simple_repeat 1 178 0 * 349 115 97 6 chr3 143156708 143156873 -74880285 + (TA)n Simple_repeat Simple_repeat 1 180 0 416 178 37 37 chr3 143157129 143157236 -74879922 - MER53 DNA DNA -82 107 1 425 309 106 64 chr3 143158060 143158464 -74878694 - MLT1K LTR MaLR 0 588 168 1195 285 116 22 chr3 143158992 143159483 -74877675 + MLT1K LTR MaLR 38 574 -14 3535 112 70 5 chr3 143159606 143160202 -74876956 - LTR24C LTR ERV1 0 635 1 504 289 60 20 chr3 143160208 143160357 -74876801 - MER91A DNA MER1_type -37 159 5 2073 225 75 11 chr3 143160742 143161275 -74875883 + MLT1F1 LTR MaLR 1 567 0 823 200 56 6 chr3 143161863 143162043 -74875115 - MER5A DNA MER1_type 0 189 1 245 258 265 15 chr3 143162288 143162420 -74874738 - MIR SINE MIR -12 250 86 2090 142 3 10 chr3 143163056 143163367 -74873791 + AluJb SINE Alu 1 309 -3 1413 241 70 32 chr3 143163414 143163887 -74873271 - LTR16C LTR ERVL 0 491 1 3310 126 19 36 chr3 143164944 143165244 -74871914 + Tigger3b DNA MER2_type 1 289 -2739 2339 46 7 0 chr3 143165244 143165547 -74871611 - AluY SINE Alu 0 305 1 3310 126 19 36 chr3 143165547 143165833 -74871325 + Tigger3b DNA MER2_type 289 578 -653 813 112 30 52 chr3 143165846 143165980 -74871178 + FLAM_C SINE Alu 7 137 -6 3669 127 30 6 chr3 143166002 143166626 -74870532 + Tigger3b DNA MER2_type 593 1231 0 1648 174 39 90 chr3 143166633 143167333 -74869825 + MER4A LTR ERV1 1 455 -10 769 131 7 8 chr3 143167338 143167494 -74869664 - L1MA8 LINE L1 -164 6127 5979 572 98 0 59 chr3 143167503 143167624 -74869534 - AluSg/x SINE Alu 0 312 216 810 102 0 0 chr3 143167625 143167733 -74869425 - AluSq/x SINE Alu -204 108 1 2326 114 28 0 chr3 143167738 143168090 -74869068 - L1PA10 LINE L1 -4 6164 5803 518 335 38 24 chr3 143168099 143168386 -74868772 - MERVL LTR ERVL -2336 3149 2859 2351 87 3 0 chr3 143168392 143168702 -74868456 - AluSq SINE Alu -2 311 1 1537 177 39 106 chr3 143168756 143169092 -74868066 + L1MD3 LINE L1 7510 7867 -128 440 132 0 0 chr3 143169092 143169168 -74867990 + L1MA1 LINE L1 6227 6302 0 1537 177 39 106 chr3 143169168 143169214 -74867944 + L1MD3 LINE L1 7867 7915 -80 625 124 108 16 chr3 143169214 143169343 -74867815 - L1MA5 LINE L1 -2 6298 6158 1537 177 39 106 chr3 143169343 143169450 -74867708 + L1MD3 LINE L1 7915 7967 -28 465 177 0 0 chr3 143169694 143169773 -74867385 - MER96 DNA MER1_type? -91 84 6 618 28 0 0 chr3 143169813 143169885 -74867273 - tRNA-Cys-TGC tRNA tRNA -3 72 1 189 132 0 0 chr3 143170355 143170393 -74866765 + (A)n Simple_repeat Simple_repeat 1 38 0 706 259 49 29 chr3 143170755 143170998 -74866160 - MIR SINE MIR 0 262 15 203 292 125 96 chr3 143171376 143171783 -74865375 + L2 LINE L2 2838 3256 -16 535 287 56 46 chr3 143172220 143172436 -74864722 + MIR SINE MIR 45 262 0 662 0 0 0 chr3 143172511 143172583 -74864575 - tRNA-Cys-TGC tRNA tRNA -3 72 1 461 294 27 7 chr3 143173658 143173804 -74863354 - MIR3 SINE MIR -10 198 50 189 292 0 0 chr3 143173847 143173895 -74863263 + L2 LINE L2 3221 3268 -4 387 267 11 0 chr3 143173915 143174005 -74863153 - MER81 DNA DNA -1 113 23 300 241 0 0 chr3 143174051 143174134 -74863024 + MER113 DNA MER1_type? 32 114 -407 813 233 0 0 chr3 143174258 143174421 -74862737 - MIR SINE MIR -23 239 77 1636 208 97 21 chr3 143174485 143174918 -74862240 + MLT2B1 LTR ERVL 9 474 -46 300 247 0 0 chr3 143174918 143175003 -74862155 + (TG)n Simple_repeat Simple_repeat 1 85 0 273 79 0 41 chr3 143175009 143175072 -74862086 + MLT2C2 LTR ERVL 429 464 0 1036 150 31 19 chr3 143175539 143175835 -74861323 + L1MA9 LINE L1 5159 5459 -743 450 209 22 0 chr3 143175836 143175975 -74861183 + (TA)n Simple_repeat Simple_repeat 2 143 0 327 283 0 11 chr3 143175975 143176067 -74861091 - L1MC4 LINE L1 -1337 6705 6615 186 189 0 0 chr3 143176070 143176107 -74861051 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 2588 155 19 15 chr3 143176108 143176630 -74860528 + L1MA9 LINE L1 5789 6312 0 244 292 21 21 chr3 143176698 143176794 -74860364 + MIR3 SINE MIR 105 200 -8 3617 184 35 7 chr3 143177025 143177793 -74859365 + L1MB2 LINE L1 5382 6171 0 21 0 0 0 chr3 143178266 143178287 -74858871 + AT_rich Low_complexity Low_complexity 1 21 0 206 156 22 0 chr3 143178509 143178554 -74858604 + CT-rich Low_complexity Low_complexity 1 46 0 1590 230 133 38 chr3 143178927 143179527 -74857631 + MLT2F LTR ERVL 1 657 -6 2355 96 3 0 chr3 143179954 143180256 -74856902 + AluSp SINE Alu 1 303 -10 385 240 47 67 chr3 143180286 143180436 -74856722 + MIR3 SINE MIR 49 195 -13 264 238 44 75 chr3 143181387 143181547 -74855611 + MLT1G1-int LTR MaLR 1389 1543 -192 914 251 40 55 chr3 143181750 143182096 -74855062 + MLT1G1 LTR MaLR 73 413 -182 434 158 8 102 chr3 143184034 143184161 -74852997 - MER33 DNA MER1_type 0 363 249 459 216 193 11 chr3 143185013 143185189 -74851969 - MER33 DNA MER1_type -116 208 1 917 136 27 22 chr3 143185305 143185489 -74851669 - MER53 DNA DNA -3 186 2 21 0 0 0 chr3 143185845 143185866 -74851292 + AT_rich Low_complexity Low_complexity 1 21 0 2474 80 0 6 chr3 143185868 143186180 -74850978 + AluSg SINE Alu 1 310 0 651 184 1 22 chr3 143186397 143186531 -74850627 - MER5A DNA MER1_type -56 122 1 503 242 82 50 chr3 143187970 143188152 -74849006 + MER5A DNA MER1_type 2 189 0 306 325 84 13 chr3 143188792 143188946 -74848212 + L2 LINE L2 3133 3297 -16 705 229 51 0 chr3 143189158 143189333 -74847825 + MER3 DNA MER1_type 1 184 -25 706 210 60 6 chr3 143189476 143189643 -74847515 - MER97b DNA MER1_type? -876 177 2 2135 102 31 7 chr3 143189974 143190267 -74846891 + AluSg SINE Alu 1 300 -10 386 265 53 17 chr3 143191790 143191968 -74845190 + MIR SINE MIR 23 207 -55 2370 126 48 5 chr3 143192890 143193262 -74843896 + MLT1B LTR MaLR 1 388 -2 2428 84 0 7 chr3 143193682 143193981 -74843177 - AluSg SINE Alu -13 297 1 580 176 132 16 chr3 143194264 143194446 -74842712 - L1MC5 LINE L1 -57 7904 7702 468 248 64 59 chr3 143195034 143195236 -74841922 + MIR SINE MIR 8 210 -52 467 346 82 5 chr3 143195278 143195486 -74841672 + MIR SINE MIR 8 231 -31 402 237 108 7 chr3 143196681 143196820 -74840338 + MER103 DNA DNA 13 165 -1 1960 151 10 70 chr3 143197103 143197515 -74839643 + MLT1B LTR MaLR 1 387 -3 821 308 40 94 chr3 143197544 143197969 -74839189 - L2 LINE L2 0 3272 2871 2639 183 13 13 chr3 143198059 143198581 -74838577 + L1MB7 LINE L1 5615 6140 -44 2227 88 0 7 chr3 143198581 143198916 -74838242 + AluSg SINE Alu 1 333 0 2639 183 13 13 chr3 143198916 143198943 -74838215 + L1MB7 LINE L1 6139 6165 -19 291 231 75 64 chr3 143198978 143199151 -74838007 + L1MEd LINE L1 90 264 -5941 376 187 27 0 chr3 143199340 143199415 -74837743 + MER116 DNA Mariner 3 79 -1 364 346 80 6 chr3 143199519 143199681 -74837477 + L1MEd LINE L1 1582 1755 -4641 837 285 93 22 chr3 143199710 143200422 -74836736 + L1MEd LINE L1 2375 3136 -3079 513 307 28 23 chr3 143200443 143200658 -74836500 + LTR33 LTR ERVL 23 238 -283 494 251 70 0 chr3 143200713 143200884 -74836274 + LTR33 LTR ERVL 335 517 -4 291 252 208 17 chr3 143200896 143201190 -74835968 + L1MEd LINE L1 3139 3488 -2727 343 203 0 0 chr3 143201319 143201383 -74835775 - MER63 DNA MER1_type -311 749 686 239 341 22 7 chr3 143201385 143201520 -74835638 + L1MEd LINE L1 3541 3677 -2538 27 0 0 0 chr3 143201725 143201752 -74835406 + AT_rich Low_complexity Low_complexity 1 27 0 2371 67 40 0 chr3 143201752 143202049 -74835109 - AluY SINE Alu -2 309 1 272 310 19 62 chr3 143202086 143202382 -74834776 + L1MEd LINE L1 3954 4234 -1981 276 30 0 0 chr3 143202585 143202618 -74834540 + (CCA)n Simple_repeat Simple_repeat 1 33 0 942 232 33 43 chr3 143202824 143203126 -74834032 + MER5C DNA MER1_type 4 302 -22 439 250 36 50 chr3 143203121 143203261 -74833897 + MER5B DNA MER1_type 33 170 -8 * 331 258 32 0 chr3 143203271 143203364 -74833794 + MER5A DNA MER1_type 11 106 -83 489 158 40 26 chr3 143203705 143204052 -74833106 + (CA)n Simple_repeat Simple_repeat 1 352 0 1491 179 43 0 chr3 143204165 143204445 -74832713 + AluJo SINE Alu 11 302 -10 200 274 89 119 chr3 143204453 143204621 -74832537 + L2 LINE L2 3002 3164 -108 706 162 15 0 chr3 143205029 143205165 -74831993 + MER82 DNA MER2_type 1 138 -515 227 328 110 14 chr3 143205184 143205529 -74831629 - L1M4 LINE L1 -2140 4006 3629 621 272 0 7 chr3 143205628 143205775 -74831383 + MER82 DNA MER2_type 507 652 -1 487 159 68 0 chr3 143206526 143206614 -74830544 - MER5A DNA MER1_type -85 104 11 712 227 49 32 chr3 143206638 143206823 -74830335 - MER5A DNA MER1_type -1 188 1 193 241 62 89 chr3 143207200 143207278 -74829880 + L2 LINE L2 3191 3267 -46 2347 103 3 0 chr3 143207278 143207579 -74829579 + AluSp SINE Alu 1 302 -11 193 241 62 89 chr3 143207579 143207612 -74829546 + L2 LINE L2 3267 3299 -14 292 229 0 21 chr3 143207617 143207713 -74829445 + GA-rich Low_complexity Low_complexity 3 96 0 193 367 56 52 chr3 143208181 143208505 -74828653 - L2 LINE L2 -13 3259 2935 441 167 0 0 chr3 143208685 143208751 -74828407 + AluJ/FLAM SINE Alu 1 66 -246 207 152 0 0 chr3 143208758 143208804 -74828354 + A-rich Low_complexity Low_complexity 1 46 0 2156 193 64 17 chr3 143209194 143209676 -74827482 - LTR22 LTR ERVK -4 505 1 2083 118 0 4 chr3 143209919 143210228 -74826930 + AluSg SINE Alu 1 308 0 435 231 19 39 chr3 143210233 143210337 -74826821 - L2 LINE L2 0 3313 3212 255 182 0 0 chr3 143210538 143210582 -74826576 - L2 LINE L2 -5 3308 3265 578 241 75 70 chr3 143210596 143210783 -74826375 - MER5A DNA MER1_type 0 189 2 1740 106 99 21 chr3 143210834 143211116 -74826042 + AluSx SINE Alu 1 304 -8 2023 134 3 10 chr3 143211126 143211433 -74825725 + AluY SINE Alu 1 305 -6 363 226 54 11 chr3 143211623 143211716 -74825442 - MIR SINE MIR -10 252 156 1897 189 58 87 chr3 143211718 143212169 -74824989 + MLT1D LTR MaLR 1 463 -42 1747 79 16 40 chr3 143212169 143212335 -74824823 - L1MA3 LINE L1 0 6305 6137 230 0 33 0 chr3 143212335 143212365 -74824793 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1930 109 72 0 chr3 143212365 143212630 -74824528 - AluSx SINE Alu -28 284 1 1747 79 16 40 chr3 143212630 143212714 -74824444 - L1MA3 LINE L1 -166 6139 6060 1897 189 58 87 chr3 143212714 143212782 -74824376 + MLT1D LTR MaLR 463 505 0 182 289 224 0 chr3 143212788 143212864 -74824294 - MIR SINE MIR -123 139 47 188 354 62 35 chr3 143212888 143213001 -74824157 - L2 LINE L2 -768 2546 2431 529 225 312 6 chr3 143213541 143213714 -74823444 + MIR SINE MIR 27 252 -10 894 246 75 72 chr3 143214190 143214535 -74822623 + L2 LINE L2 2964 3309 -4 1373 93 77 93 chr3 143215124 143215248 -74821910 + MER39B LTR ERV1 1 125 -528 8058 35 0 7 chr3 143215248 143216769 -74820389 - L1PA4 LINE L1 -3 6152 4637 1373 93 77 93 chr3 143216769 143216903 -74820255 + MER39B LTR ERV1 125 255 -398 1208 123 0 0 chr3 143216903 143217066 -74820092 + AluSc SINE Alu 133 295 -14 331 114 0 0 chr3 143217072 143217115 -74820043 + MER39B LTR ERV1 251 293 -360 1984 147 44 85 chr3 143217115 143217572 -74819586 - LTR8 LTR ERV1 0 691 254 835 138 0 88 chr3 143217571 143217685 -74819473 - LTR8 LTR ERV1 -546 145 47 * 3376 96 142 57 chr3 143217685 143218017 -74819141 + LTR10E LTR ERV1 1 303 -330 2982 6 0 0 chr3 143218017 143218335 -74818823 + AluYb8 SINE Alu 1 318 0 3376 96 142 57 chr3 143218335 143218585 -74818573 + LTR10E LTR ERV1 303 633 0 835 138 0 88 chr3 143218585 143218629 -74818529 - LTR8 LTR ERV1 -644 47 1 2231 116 55 3 chr3 143218629 143218975 -74818183 + MER39B LTR ERV1 290 653 0 182 36 0 36 chr3 143219130 143219158 -74818000 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 397 159 0 0 chr3 143219214 143219277 -74817881 + MLT1C LTR MaLR 405 467 0 2292 93 3 31 chr3 143219401 143219722 -74817436 - AluSq SINE Alu -1 312 1 180 301 133 18 chr3 143219864 143219977 -74817181 + MER5A DNA MER1_type 36 161 -28 2662 126 43 31 chr3 143220195 143220519 -74816639 - MSTC LTR MaLR -2 426 94 2049 115 3 51 chr3 143220519 143220831 -74816327 - AluSq SINE Alu -14 299 3 2662 126 43 31 chr3 143220831 143220927 -74816231 - MSTC LTR MaLR -334 94 1 26 0 0 0 chr3 143220983 143221009 -74816149 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr3 143221237 143221259 -74815899 + AT_rich Low_complexity Low_complexity 1 22 0 513 159 0 80 chr3 143221336 143221400 -74815758 + U13 snRNA snRNA 1 54 -50 2383 81 0 3 chr3 143221400 143221709 -74815449 - AluSg1 SINE Alu 0 309 2 513 159 0 80 chr3 143221709 143221757 -74815401 + U13 snRNA snRNA 54 104 0 4961 127 53 13 chr3 143221893 143222642 -74814516 + MER4E LTR ERV1 1 779 0 227 290 103 20 chr3 143223096 143223348 -74813810 + L1P LINE L1 3527 3799 -2347 1917 123 17 7 chr3 143223397 143223697 -74813461 - LTR23 LTR ERV1 0 437 135 1220 182 129 68 chr3 143223698 143223978 -74813180 - AluJo SINE Alu -1 301 5 750 334 49 19 chr3 143224028 143224453 -74812705 + L2 LINE L2 1720 2157 -1157 5321 134 10 24 chr3 143224468 143225261 -74811897 - LTR39 LTR ERV1 0 783 2 457 186 0 12 chr3 143225266 143225352 -74811806 + MIR SINE MIR 84 168 -94 875 139 32 13 chr3 143225358 143225500 -74811658 - MER65C LTR ERV1 0 461 317 3312 156 43 52 chr3 143225500 143226339 -74810819 - LTR1 LTR ERV1 0 785 1 1400 206 45 10 chr3 143226339 143226649 -74810509 - MER65C LTR ERV1 -138 323 3 288 279 0 0 chr3 143226650 143226718 -74810440 + MIR SINE MIR 170 237 -25 432 237 21 0 chr3 143226719 143226816 -74810342 + MER5B DNA MER1_type 1 99 -79 342 211 0 0 chr3 143226855 143226918 -74810240 - AluJb SINE Alu -2 300 238 2243 148 48 16 chr3 143226918 143227417 -74809741 + MER41B LTR ERV1 1 595 -40 1248 182 21 25 chr3 143227418 143227660 -74809498 - AluJb SINE Alu -71 241 1 234 216 39 0 chr3 143227660 143227711 -74809447 + MER5B DNA MER1_type 123 175 -3 2366 115 55 12 chr3 143227856 143228269 -74808889 - LTR23 LTR ERV1 -1 466 2 1143 281 102 23 chr3 143228274 143228868 -74808290 + L2 LINE L2 2468 3150 -163 3534 151 46 20 chr3 143228868 143229456 -74807702 - LTR26 LTR ERV1 0 603 1 1143 281 102 23 chr3 143229456 143229635 -74807523 + L2 LINE L2 3150 3313 0 843 269 135 30 chr3 143230107 143230545 -74806613 + LTR16B LTR ERVL 10 464 0 2302 107 0 0 chr3 143231218 143231517 -74805641 + AluSx SINE Alu 1 299 -13 249 350 10 0 chr3 143231580 143231677 -74805481 + MIR SINE MIR 156 253 -9 2070 169 81 17 chr3 143231947 143232356 -74804802 - MER63B DNA MER1_type 0 436 2 338 208 183 8 chr3 143232627 143232747 -74804411 + L2 LINE L2 3172 3312 -1 750 191 7 0 chr3 143232774 143232915 -74804243 - Charlie1 DNA MER1_type 0 2761 2620 * 914 201 20 91 chr3 143232896 143233058 -74804100 - Charlie1 DNA MER1_type -2519 242 127 1961 139 0 0 chr3 143233058 143233368 -74803790 - AluSg SINE Alu 0 310 1 914 201 20 91 chr3 143233368 143233487 -74803671 - Charlie1 DNA MER1_type -2634 127 1 2285 143 132 8 chr3 143233980 143234358 -74802800 - MSTA LTR MaLR -3 425 1 24 32 0 0 chr3 143234392 143234423 -74802735 + AT_rich Low_complexity Low_complexity 1 31 0 360 0 0 0 chr3 143234896 143234936 -74802222 + (TG)n Simple_repeat Simple_repeat 2 41 0 31 0 0 0 chr3 143234984 143235015 -74802143 + AT_rich Low_complexity Low_complexity 1 31 0 224 167 21 0 chr3 143235366 143235414 -74801744 + (TA)n Simple_repeat Simple_repeat 2 50 0 966 178 45 15 chr3 143235484 143235686 -74801472 - L2 LINE L2 0 3313 3106 1832 199 71 34 chr3 143235715 143236153 -74801005 + LTR2B LTR ERV1 37 490 0 4961 75 3 0 chr3 143236153 143236789 -74800369 + Harlequin LTR ERV1 1 638 -6258 2082 178 68 32 chr3 143236789 143237232 -74799926 - LTR2B LTR ERV1 0 490 32 38518 74 18 17 chr3 143237250 143238861 -74798297 - Harlequin LTR ERV1 0 6896 5288 316 26 0 0 chr3 143238861 143238900 -74798258 - AluY SINE Alu -169 132 94 38518 74 18 17 chr3 143238900 143242340 -74794818 - Harlequin LTR ERV1 -1608 5288 1803 7315 74 128 13 chr3 143242320 143242457 -74794701 - HERVE LTR ERV1 -3668 4117 3997 * 198 0 0 0 chr3 143242457 143242479 -74794679 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 7315 74 128 13 chr3 143242479 143243431 -74793727 - HERVE LTR ERV1 -3788 3997 263 774 132 7 40 chr3 143243404 143243556 -74793602 - HERVE LTR ERV1 -7412 401 255 * 2615 121 2 25 chr3 143243540 143243936 -74793222 - HERVE LTR ERV1 -6509 387 1 2304 164 91 30 chr3 143243936 143244398 -74792760 - LTR2B LTR ERV1 0 490 1 47526 61 22 24 chr3 143244398 143250655 -74786503 + Harlequin LTR ERV1 635 6884 -12 630 292 146 10 chr3 143250655 143250668 -74786490 - L2 LINE L2 -198 3115 3105 2112 173 95 37 chr3 143250668 143251131 -74786027 + LTR2B LTR ERV1 1 490 0 630 292 146 10 chr3 143251131 143251438 -74785720 - L2 LINE L2 -208 3105 2753 445 213 92 40 chr3 143251771 143251945 -74785213 - L1ME4a LINE L1 0 6121 5939 1007 220 16 16 chr3 143252309 143252559 -74784599 + MER96B DNA MER1_type? 1 250 -167 357 292 0 31 chr3 143252561 143252657 -74784501 + MER5A DNA MER1_type 91 183 -6 1133 210 123 36 chr3 143252717 143253032 -74784126 + MLT1E LTR MaLR 283 592 -1 48 0 0 0 chr3 143253038 143253086 -74784072 + AT_rich Low_complexity Low_complexity 1 48 0 1508 211 26 26 chr3 143253226 143253610 -74783548 - L1MB8 LINE L1 -5 6173 5790 260 227 36 82 chr3 143253642 143253752 -74783406 - Charlie7 DNA MER1_type -2488 124 20 1391 278 33 18 chr3 143254259 143254648 -74782510 + LTR16A LTR ERVL 52 446 -4 2572 146 3 3 chr3 143254848 143255212 -74781946 + THE1B LTR MaLR 1 364 0 2216 112 0 16 chr3 143256108 143256411 -74780747 - AluSx SINE Alu -14 298 1 2165 102 6 40 chr3 143256948 143257270 -74779888 - AluSx SINE Alu -1 311 1 2285 119 0 3 chr3 143257561 143257872 -74779286 + AluSg SINE Alu 1 310 0 227 253 138 23 chr3 143257900 143257987 -74779171 + MIR3 SINE MIR 71 167 -41 257 279 89 0 chr3 143260123 143260202 -74776956 - MIR SINE MIR -17 245 160 469 129 81 5 chr3 143260203 143260324 -74776834 - MER53 DNA DNA -1 188 2 717 223 14 0 chr3 143260346 143260485 -74776673 - MIR SINE MIR -110 152 12 439 246 78 28 chr3 143260770 143260912 -74776246 + MER103 DNA DNA 1 149 -17 286 247 53 87 chr3 143261008 143261158 -74776000 - L1MC5 LINE L1 -71 7890 7746 2361 98 0 0 chr3 143261369 143261666 -74775492 - AluSx SINE Alu -14 298 2 651 222 0 0 chr3 143261762 143261879 -74775279 + FRAM SINE Alu 28 144 -32 813 190 0 10 chr3 143261911 143262051 -74775107 + FLAM_C SINE Alu 2 138 -5 458 236 38 127 chr3 143262619 143262856 -74774302 - MIR SINE MIR 0 262 47 2033 166 72 46 chr3 143263440 143263857 -74773301 + MSTC LTR MaLR 1 428 0 483 280 147 65 chr3 143264048 143264516 -74772642 - L2 LINE L2 -33 3280 2778 246 256 33 66 chr3 143264561 143264652 -74772506 + L1MC5 LINE L1 7797 7885 -76 2451 89 0 0 chr3 143264652 143264954 -74772204 + AluSq SINE Alu 1 302 -11 246 256 33 66 chr3 143264954 143264983 -74772175 + L1MC5 LINE L1 7885 7913 -48 2465 94 0 0 chr3 143265350 143265657 -74771501 - AluSc SINE Alu -2 307 1 216 0 0 0 chr3 143266312 143266336 -74770822 + (CA)n Simple_repeat Simple_repeat 2 25 0 734 266 75 18 chr3 143266464 143266690 -74770468 + MIR SINE MIR 14 252 -10 1209 148 84 5 chr3 143266780 143266982 -74770176 + MER20 DNA MER1_type 1 218 -1 2254 112 0 0 chr3 143267951 143268245 -74768913 + AluSg SINE Alu 2 295 -15 1944 91 94 0 chr3 143268257 143268522 -74768636 + AluSx SINE Alu 5 294 -18 707 230 73 0 chr3 143268731 143268896 -74768262 + MER5B DNA MER1_type 2 178 0 2506 82 0 0 chr3 143269113 143269419 -74767739 + AluSq SINE Alu 1 306 -7 741 202 51 56 chr3 143269968 143270146 -74767012 - MER5B DNA MER1_type -1 177 1 543 267 126 0 chr3 143270430 143270592 -74766566 - MER5A DNA MER1_type 0 189 4 2172 118 0 7 chr3 143270630 143270936 -74766222 - AluSx SINE Alu -8 304 1 1029 198 39 0 chr3 143271064 143271246 -74765912 + MER5A DNA MER1_type 1 189 0 576 254 16 48 chr3 143271516 143271705 -74765453 + MER5A DNA MER1_type 7 189 0 558 237 160 0 chr3 143271713 143271869 -74765289 - MER5A DNA MER1_type 0 189 9 357 282 97 8 chr3 143271935 143272059 -74765099 - L3 LINE CR1 -18 1559 1425 218 265 44 44 chr3 143272086 143272154 -74765004 - L2 LINE L2 -2 3270 3203 204 97 0 0 chr3 143273329 143273360 -74763798 + (GA)n Simple_repeat Simple_repeat 2 32 0 347 313 45 55 chr3 143273510 143273711 -74763447 - MIR SINE MIR -33 229 31 711 171 71 59 chr3 143273734 143273904 -74763254 + MER5B DNA MER1_type 4 175 -3 2440 102 0 0 chr3 143274505 143274818 -74762340 + AluSq SINE Alu 1 313 0 217 233 0 0 chr3 143274932 143274975 -74762183 + GA-rich Low_complexity Low_complexity 2 44 0 386 239 144 45 chr3 143275513 143275703 -74761455 + MIR SINE MIR 3 210 -52 716 256 170 75 chr3 143276164 143276695 -74760463 - L2 LINE L2 -12 3301 2701 2419 63 0 0 chr3 143276695 143276980 -74760178 + AluY SINE Alu 1 285 -26 716 256 170 75 chr3 143276980 143277212 -74759946 - L2 LINE L2 -612 2701 2493 218 241 190 13 chr3 143277342 143277421 -74759737 - L2 LINE L2 -344 2969 2877 181 365 50 13 chr3 143277428 143277587 -74759571 - L2 LINE L2 -955 2359 2195 324 0 0 0 chr3 143277780 143277816 -74759342 + (TG)n Simple_repeat Simple_repeat 2 37 0 1103 256 92 68 chr3 143278861 143279424 -74757734 - L1MC4a LINE L1 -1794 6014 5438 275 261 0 0 chr3 143279438 143279503 -74757655 + L1 LINE L1 4060 4124 -2022 1829 95 0 0 chr3 143279588 143279829 -74757329 - L1PA13 LINE L1 -1 6162 5922 3833 180 94 46 chr3 143279957 143280749 -74756409 - MER21B LTR ERV1 -3 860 26 2393 80 3 3 chr3 143280749 143281048 -74756110 + AluSq SINE Alu 1 299 -14 3833 180 94 46 chr3 143281048 143281076 -74756082 - MER21B LTR ERV1 -837 26 1 492 278 132 46 chr3 143281148 143281738 -74755420 - L1MC4a LINE L1 -1009 5137 4497 790 287 90 54 chr3 143281823 143282531 -74754627 - L1MC4a LINE L1 -1962 4184 3451 1323 164 14 5 chr3 143283018 143283232 -74753926 + MER20 DNA MER1_type 1 216 -3 212 298 0 0 chr3 143284492 143284539 -74752619 - L2 LINE L2 -3 3310 3264 1683 166 6 47 chr3 143284567 143284715 -74752443 + AluJo SINE Alu 1 153 -159 2281 114 10 0 chr3 143284715 143285014 -74752144 + AluSx SINE Alu 1 302 -10 1683 166 6 47 chr3 143285014 143285184 -74751974 + AluJo SINE Alu 153 306 -6 662 259 33 28 chr3 143285792 143286026 -74751132 + MIR SINE MIR 20 251 -11 202 282 42 14 chr3 143286057 143286128 -74751030 + MIR3 SINE MIR 112 184 -24 229 261 141 11 chr3 143287525 143287617 -74749541 + MER5A DNA MER1_type 9 112 -77 339 246 91 27 chr3 143287772 143287882 -74749276 + MIR3 SINE MIR 92 208 0 1954 160 3 13 chr3 143288186 143288499 -74748659 - AluJb SINE Alu -2 310 1 339 25 0 0 chr3 143288549 143288589 -74748569 + (CA)n Simple_repeat Simple_repeat 2 41 0 1363 186 14 0 chr3 143288666 143288887 -74748271 + MER58A DNA MER1_type 1 224 0 307 336 40 40 chr3 143289004 143289153 -74748005 + MIR SINE MIR 6 154 -108 349 326 159 8 chr3 143289526 143289658 -74747500 + L2 LINE L2 3116 3267 -5 281 231 201 17 chr3 143290339 143290507 -74746651 + MIR SINE MIR 44 248 -14 1132 216 5 0 chr3 143291182 143291390 -74745768 - MER3 DNA MER1_type 0 209 1 188 348 174 0 chr3 143292195 143292287 -74744871 - L2 LINE L2 -2944 370 263 267 254 245 0 chr3 143292513 143292624 -74744534 - MIR SINE MIR -62 146 5 284 326 12 0 chr3 143292815 143292901 -74744257 + MIR SINE MIR 48 134 -128 22 0 0 0 chr3 143292901 143292923 -74744235 + AT_rich Low_complexity Low_complexity 1 22 0 2021 120 10 0 chr3 143292923 143293214 -74743944 - AluSx SINE Alu -18 294 1 589 188 34 0 chr3 143294400 143294517 -74742641 + MER45A DNA AcHobo 27 147 -31 236 259 17 0 chr3 143295925 143295983 -74741175 - MLT1I LTR MaLR -259 150 92 2233 92 0 4 chr3 143296185 143296532 -74740626 - AluSc SINE Alu 0 346 1 1845 149 3 3 chr3 143298468 143298796 -74738362 + AluJb SINE Alu 1 328 0 796 167 0 16 chr3 143298825 143298951 -74738207 + FLAM_C SINE Alu 2 125 -18 190 231 0 0 chr3 143299887 143299926 -74737232 - L2 LINE L2 -213 3059 3021 2320 51 14 0 chr3 143299947 143300222 -74736936 + AluY SINE Alu 1 279 -32 261 0 0 0 chr3 143300222 143300251 -74736907 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 499 245 72 0 chr3 143300493 143300632 -74736526 - MER63A DNA MER1_type -3 207 59 359 299 43 8 chr3 143300714 143300831 -74736327 + L3 LINE CR1 1255 1375 -202 278 136 0 0 chr3 143300950 143300994 -74736164 + MER53 DNA DNA 7 50 -139 199 306 83 19 chr3 143301534 143301642 -74735516 + L2 LINE L2 3199 3313 0 209 362 16 58 chr3 143301981 143302169 -74734989 + L2 LINE L2 543 722 -2592 254 253 263 0 chr3 143302899 143302994 -74734164 - MIR SINE MIR -94 168 49 485 317 42 88 chr3 143303164 143303549 -74733609 - L2 LINE L2 -35 3237 2871 261 0 0 0 chr3 143303802 143303831 -74733327 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 206 347 125 34 chr3 143303969 143304266 -74732892 + L2 LINE L2 2268 2591 -723 2243 107 10 0 chr3 143304373 143304682 -74732476 + AluSq SINE Alu 1 312 -1 1840 178 0 13 chr3 143304778 143305092 -74732066 + AluJo SINE Alu 1 310 -2 272 257 218 20 chr3 143305371 143305472 -74731686 + L2 LINE L2 3137 3257 -15 2498 249 70 54 chr3 143305828 143306417 -74730741 - L2 LINE L2 -9 3304 2726 1993 119 3 33 chr3 143306417 143306720 -74730438 + AluSx SINE Alu 3 296 -16 2498 249 70 54 chr3 143306720 143306735 -74730423 - L2 LINE L2 -587 2726 2713 1966 162 3 0 chr3 143306735 143307032 -74730126 + AluJb SINE Alu 1 298 -14 2498 249 70 54 chr3 143307032 143307520 -74729638 - L2 LINE L2 -600 2713 2179 296 221 266 44 chr3 143308125 143308283 -74728875 - MIR3 SINE MIR -7 201 9 207 186 0 0 chr3 143309030 143309073 -74728085 + (CA)n Simple_repeat Simple_repeat 2 44 0 281 331 28 48 chr3 143309412 143309455 -74727703 + MIR3 SINE MIR 59 101 -107 1886 179 0 7 chr3 143309455 143309762 -74727396 - AluJo SINE Alu -7 305 1 281 331 28 48 chr3 143309762 143309863 -74727295 + MIR3 SINE MIR 101 200 -8 1391 111 0 0 chr3 143310778 143310967 -74726191 - AluSg/x SINE Alu -1 311 123 1789 126 89 0 chr3 143310972 143311243 -74725915 - MER41C LTR ERV1 -259 295 1 2079 139 3 0 chr3 143311264 143311559 -74725599 + AluSx SINE Alu 1 296 -16 287 292 129 0 chr3 143311778 143311949 -74725209 - HAL1 LINE L1 -754 1753 1561 40718 36 22 2 chr3 143311949 143317978 -74719180 - L1PA2 LINE L1 -1 6154 1 605 256 35 5 chr3 143317978 143318177 -74718981 - HAL1 LINE L1 -929 1578 1374 310 285 111 35 chr3 143318280 143318424 -74718734 - L1MEd LINE L1 -5004 1066 912 1010 186 0 0 chr3 143318477 143318644 -74718514 - FRAM SINE Alu -9 167 1 394 327 30 24 chr3 143318651 143318819 -74718339 - HAL1 LINE L1 -1490 1017 849 1780 237 63 85 chr3 143318920 143319687 -74717471 - L1MEd LINE L1 -5314 756 7 2553 146 20 26 chr3 143320405 143320863 -74716295 - LTR32 LTR ERVL 0 471 17 487 344 11 16 chr3 143321532 143321718 -74715440 - MER5A DNA MER1_type 0 189 5 1308 117 10 0 chr3 143321718 143321924 -74715234 - L1P4 LINE L1 -558 5608 5401 873 142 12 0 chr3 143321911 143322073 -74715085 + L1P4 LINE L1 5581 5744 -422 * 7509 174 37 72 chr3 143322073 143322763 -74714395 - MER52A LTR ERV1 0 1755 1042 1772 228 34 85 chr3 143322763 143323408 -74713750 - LTR9 LTR ERV1 0 612 1 7509 174 37 72 chr3 143323408 143324536 -74712622 - MER52A LTR ERV1 -713 1042 1 2750 109 9 19 chr3 143324536 143324966 -74712192 + L1PA16 LINE L1 5741 6166 0 192 77 0 0 chr3 143325078 143325104 -74712054 + (TG)n Simple_repeat Simple_repeat 2 27 0 5897 29 1 4 chr3 143325119 143325820 -74711338 + L1PA4 LINE L1 5457 6155 0 28 0 0 0 chr3 143326371 143326399 -74710759 + AT_rich Low_complexity Low_complexity 1 28 0 984 174 0 53 chr3 143326499 143326660 -74710498 + MIR SINE MIR 20 171 -91 1837 67 13 13 chr3 143326660 143326899 -74710259 + AluSc SINE Alu 65 303 -6 984 174 0 53 chr3 143326899 143326927 -74710231 + MIR SINE MIR 171 199 -63 311 130 0 0 chr3 143327097 143327143 -74710015 - THE1C LTR MaLR 0 428 383 2483 48 3 0 chr3 143329235 143329526 -74707632 - AluY SINE Alu -19 292 1 578 191 96 0 chr3 143330380 143330495 -74706663 + FLAM_A SINE Alu 1 126 -7 207 0 0 0 chr3 143330630 143330653 -74706505 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2361 69 14 0 chr3 143331297 143331585 -74705573 - AluY SINE Alu -19 292 1 2310 109 0 16 chr3 143332387 143332700 -74704458 - AluSc SINE Alu -1 308 1 1295 122 65 13 chr3 143333416 143333645 -74703513 - THE1C LTR MaLR -25 350 110 765 280 121 26 chr3 143334812 143335308 -74701850 + HAL1 LINE L1 1373 1915 -592 838 110 44 7 chr3 143335728 143335864 -74701294 - MLT2A1 LTR ERVL 0 444 304 3478 209 89 12 chr3 143335875 143336695 -74700463 + L1M1 LINE L1 118 1000 -6565 734 248 29 45 chr3 143336964 143337274 -74699884 + pTR5 LTR ERV1 743 1047 -1391 3873 96 166 68 chr3 143337333 143338085 -74699073 + LTR12 LTR ERV1 1 826 0 883 191 91 22 chr3 143339458 143339689 -74697469 - L1MD2 LINE L1 -208 6151 5905 801 279 46 48 chr3 143340653 143341026 -74696132 + L2 LINE L2 2933 3304 -9 299 313 15 8 chr3 143341354 143341488 -74695670 + L1ME LINE L1 461 595 -5935 331 173 12 37 chr3 143341672 143341773 -74695385 + L1ME LINE L1 2577 2650 -3890 909 181 0 13 chr3 143341776 143341925 -74695233 + FRAM SINE Alu 13 159 -17 25 0 0 0 chr3 143342747 143342772 -74694386 + AT_rich Low_complexity Low_complexity 1 25 0 206 322 0 0 chr3 143342853 143342912 -74694246 - L2 LINE L2 -4 3309 3251 207 0 0 0 chr3 143343395 143343418 -74693740 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 198 318 0 0 chr3 143343528 143343591 -74693567 + L2 LINE L2 3251 3313 0 780 274 31 47 chr3 143343693 143343948 -74693210 - MIR SINE MIR 0 262 12 752 218 11 46 chr3 143343962 143344136 -74693022 - MER5A DNA MER1_type 0 189 22 2062 105 42 60 chr3 143344414 143344796 -74692362 + THE1C LTR MaLR 1 375 0 25 75 0 0 chr3 143347724 143347777 -74689381 + AT_rich Low_complexity Low_complexity 1 53 0 741 303 39 4 chr3 143347965 143348196 -74688962 + MIR SINE MIR 12 250 -12 1273 184 134 70 chr3 143348622 143348886 -74688272 + MLT1A1 LTR MaLR 1 294 -71 1580 178 0 51 chr3 143348886 143349205 -74687953 - AluJb SINE Alu 0 308 5 1273 184 134 70 chr3 143349205 143349282 -74687876 + MLT1A1 LTR MaLR 294 365 0 365 279 8 60 chr3 143349846 143350010 -74687148 + MIR SINE MIR 4 155 -55 29 47 0 0 chr3 143350650 143350693 -74686465 + AT_rich Low_complexity Low_complexity 1 43 0 229 253 291 0 chr3 143350765 143350844 -74686314 - MIR SINE MIR -109 153 52 233 47 0 70 chr3 143351580 143351623 -74685535 - L1PA8 LINE L1 -6 6166 6127 3899 63 4 0 chr3 143351663 143352168 -74684990 - L1PA8 LINE L1 -13 6159 5653 330 315 92 0 chr3 143353289 143353419 -74683739 - MIR SINE MIR -27 235 94 183 129 0 0 chr3 143354000 143354031 -74683127 + (TA)n Simple_repeat Simple_repeat 2 32 0 681 133 53 13 chr3 143354292 143354441 -74682717 - Charlie5 DNA MER1_type -27 2585 2431 2129 153 50 70 chr3 143354441 143354888 -74682270 + MER31A LTR ERV1 1 439 -46 1611 185 0 25 chr3 143354888 143355174 -74681984 - AluJo SINE Alu -33 279 1 2129 153 50 70 chr3 143355174 143355208 -74681950 + MER31A LTR ERV1 439 472 -13 2286 82 14 0 chr3 143355210 143355502 -74681656 - AluSq SINE Alu -17 296 1 240 127 0 36 chr3 143355516 143355571 -74681587 - Charlie5 DNA MER1_type -133 2479 2427 250 171 0 0 chr3 143355594 143355635 -74681523 - Charlie5 DNA MER1_type -2563 49 9 301 320 94 8 chr3 143356089 143356217 -74680941 + L3 LINE CR1 1068 1206 -371 256 322 70 28 chr3 143356584 143356727 -74680431 + MIR SINE MIR 37 185 -77 188 200 250 0 chr3 143357457 143357517 -74679641 + MIR SINE MIR 113 187 -75 21 0 0 0 chr3 143360108 143360129 -74677029 + AT_rich Low_complexity Low_complexity 1 21 0 354 171 67 48 chr3 143360544 143360649 -74676509 - MER20B DNA MER1_type 0 783 677 281 239 60 30 chr3 143360675 143360809 -74676349 + L1MCb LINE L1 396 533 -5889 729 254 112 16 chr3 143361187 143361639 -74675519 + L1MCb LINE L1 833 1345 -5078 764 229 120 40 chr3 143362079 143362176 -74674982 - MER20B DNA MER1_type -192 591 503 1682 114 100 36 chr3 143362176 143362456 -74674702 - AluSx SINE Alu -14 298 1 764 229 120 40 chr3 143362456 143362708 -74674450 - MER20B DNA MER1_type -280 503 214 1873 144 32 35 chr3 143362740 143363053 -74674105 - AluJo SINE Alu 0 312 1 1231 189 108 8 chr3 143363756 143364005 -74673153 + AluJo SINE Alu 17 290 -22 342 67 0 0 chr3 143367792 143367837 -74669321 + (TG)n Simple_repeat Simple_repeat 2 46 0 1928 142 0 17 chr3 143367850 143368152 -74669006 - AluJb SINE Alu -14 298 2 204 175 25 0 chr3 143368192 143368232 -74668926 + (TAA)n Simple_repeat Simple_repeat 2 42 0 395 285 100 15 chr3 143368514 143368644 -74668514 - MIR SINE MIR -55 207 67 751 168 0 8 chr3 143369207 143369326 -74667832 - FLAM_C SINE Alu -15 118 1 2070 122 0 0 chr3 143369470 143369749 -74667409 - AluSg SINE Alu -31 279 1 419 330 106 26 chr3 143370062 143370289 -74666869 + MIR SINE MIR 16 260 -2 41 21 0 0 chr3 143371019 143371067 -74666091 + AT_rich Low_complexity Low_complexity 1 48 0 743 275 88 96 chr3 143371874 143372260 -74664898 - L2 LINE L2 -1 3312 2930 832 193 40 0 chr3 143372345 143372521 -74664637 + L1MB7 LINE L1 5632 5814 -364 1039 159 84 9 chr3 143372525 143372751 -74664407 + L1MB7 LINE L1 5934 6176 -8 2255 98 0 22 chr3 143372903 143373221 -74663937 - AluSx SINE Alu -1 311 1 403 223 184 0 chr3 143373590 143373693 -74663465 - MER5C DNA MER1_type -202 122 1 723 180 0 0 chr3 143373960 143374071 -74663087 - AluJo SINE Alu -24 288 178 904 194 24 0 chr3 143374122 143374287 -74662871 - AluJo SINE Alu -138 174 6 2467 59 10 0 chr3 143374648 143374953 -74662205 + AluY SINE Alu 1 308 -3 1294 72 6 0 chr3 143374953 143375120 -74662038 + AluY SINE Alu 133 300 -11 345 261 60 45 chr3 143375852 143375986 -74661172 + MIR SINE MIR 115 250 -12 3426 181 67 49 chr3 143376750 143377588 -74659570 - L1MB7 LINE L1 -8 6176 5266 2350 94 23 7 chr3 143377588 143377895 -74659263 - AluSx SINE Alu 0 312 1 3426 181 67 49 chr3 143377895 143378551 -74658607 - L1MB7 LINE L1 -918 5266 4623 1359 171 0 5 chr3 143378568 143378785 -74658373 + AluSg/x SINE Alu 85 300 -12 613 213 45 0 chr3 143378797 143378952 -74658206 - L1MB7 LINE L1 -1544 4602 4441 1989 149 3 0 chr3 143380692 143380980 -74656178 + AluSx SINE Alu 1 289 -23 300 192 101 50 chr3 143381096 143381195 -74655963 - MIR SINE MIR -3 259 156 1088 138 204 110 chr3 143381197 143381515 -74655643 + MER7A DNA MER2_type 1 346 0 458 259 145 0 chr3 143381519 143381650 -74655508 - MIR SINE MIR -111 151 2 357 330 132 46 chr3 143381844 143382192 -74654966 + L3 LINE CR1 1183 1560 -17 681 123 70 0 chr3 143382899 143383013 -74654145 - FLAM_C SINE Alu -11 122 1 2072 126 32 0 chr3 143383878 143384163 -74652995 - AluSq SINE Alu -13 300 7 561 156 148 0 chr3 143384610 143384738 -74652420 - MER3 DNA MER1_type -5 204 58 1083 106 12 49 chr3 143384756 143385008 -74652150 + MER1B DNA MER1_type 37 334 -5 21 82 0 0 chr3 143387122 143387171 -74649987 + AT_rich Low_complexity Low_complexity 1 49 0 25 31 0 0 chr3 143391300 143391332 -74645826 + AT_rich Low_complexity Low_complexity 1 32 0 736 149 15 30 chr3 143391898 143392032 -74645126 + FLAM_C SINE Alu 2 133 0 326 272 24 40 chr3 143393152 143393277 -74643881 - MER20 DNA MER1_type 0 219 97 1353 162 31 0 chr3 143393278 143393507 -74643651 + MER46A DNA MER2_type 1 236 0 2275 95 0 55 chr3 143395032 143395357 -74641801 - AluSx SINE Alu -5 307 1 206 293 38 57 chr3 143395560 143395666 -74641492 - MIR SINE MIR -43 219 116 1523 206 91 17 chr3 143395669 143396290 -74640868 + L1ME LINE L1 5061 5731 -435 285 250 86 20 chr3 143397130 143397282 -74639876 - L1MEd LINE L1 -5954 165 4 1982 80 0 8 chr3 143397344 143397646 -74639512 - AluSg SINE Alu 0 334 35 249 288 65 13 chr3 143397666 143397819 -74639339 - L1ME4a LINE L1 -1 6120 5960 249 57 0 0 chr3 143397856 143397891 -74639267 + (T)n Simple_repeat Simple_repeat 1 35 0 261 94 210 0 chr3 143398612 143398755 -74638403 - L1PA2 LINE L1 -6 6149 5977 1371 166 59 24 chr3 143398969 143399258 -74637900 + AluY SINE Alu 1 299 -2 3926 67 10 0 chr3 143399270 143400085 -74637073 + L1P4 LINE L1 5002 5822 -352 31 0 0 0 chr3 143400207 143400238 -74636920 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr3 143400276 143400299 -74636859 + AT_rich Low_complexity Low_complexity 1 23 0 30 0 0 0 chr3 143400313 143400343 -74636815 + AT_rich Low_complexity Low_complexity 1 30 0 217 398 76 8 chr3 143401834 143401952 -74635206 - MER5A DNA MER1_type -3 186 61 56 71 0 0 chr3 143402040 143402152 -74635006 + GC_rich Low_complexity Low_complexity 1 112 0 348 321 79 6 chr3 143402770 143402935 -74634223 - MIR SINE MIR -10 252 76 1146 188 136 30 chr3 143403231 143403561 -74633597 - MLT1A1 LTR MaLR 0 365 1 284 295 0 0 chr3 143406261 143406339 -74630819 - MER91B DNA MER1_type -9 181 104 401 279 0 58 chr3 143406626 143406869 -74630289 + C-rich Low_complexity Low_complexity 1 228 0 987 276 72 25 chr3 143407440 143407845 -74629313 - LTR16A LTR ERVL -6 444 21 516 243 227 16 chr3 143407867 143408052 -74629106 + MER58A DNA MER1_type 1 224 0 6327 86 10 5 chr3 143408688 143409612 -74627546 + L1PA7 LINE L1 5224 6154 0 3652 103 2 48 chr3 143410420 143410506 -74626652 - L1M1 LINE L1 -4638 2927 2839 1956 135 7 0 chr3 143410506 143410834 -74626324 - AluSx SINE Alu 0 330 1 3652 103 2 48 chr3 143410834 143410948 -74626210 - L1M1 LINE L1 -4726 2839 2721 1819 133 4 0 chr3 143410948 143411211 -74625947 - AluSx SINE Alu -13 299 36 3652 103 2 48 chr3 143411211 143411690 -74625468 - L1M1 LINE L1 -4844 2721 2286 316 212 2 0 chr3 143411790 143411852 -74625306 - MER5A DNA MER1_type -124 65 4 456 332 138 3 chr3 143412139 143412369 -74624789 + MIR SINE MIR 9 262 0 502 278 106 7 chr3 143412541 143412692 -74624466 + MIR3 SINE MIR 42 207 -1 294 149 14 40 chr3 143413738 143413812 -74623346 - MLT1J LTR MaLR -1 589 518 6763 50 2 0 chr3 143413993 143414873 -74622285 - L1PA3 LINE L1 -3 6152 5271 719 266 104 47 chr3 143415336 143415700 -74621458 - MLT1J LTR MaLR -123 388 4 327 208 99 40 chr3 143415726 143415827 -74621331 - MIR SINE MIR -153 109 3 425 340 27 22 chr3 143416118 143416303 -74620855 + MIR3 SINE MIR 2 187 -21 270 323 69 15 chr3 143416607 143416737 -74620421 + L2 LINE L2 3161 3297 -16 667 230 58 0 chr3 143416949 143417123 -74620035 + MER3 DNA MER1_type 1 184 -25 658 222 60 6 chr3 143417265 143417432 -74619726 - MER97a DNA MER1_type? -717 177 2 2135 102 31 7 chr3 143417757 143418050 -74619108 + AluSg SINE Alu 1 300 -10 4804 109 18 3 chr3 143420124 143420927 -74616231 - L1PA12 LINE L1 -157 6011 5199 444 261 28 11 chr3 143421006 143421182 -74615976 + L1MC5 LINE L1 6961 7139 -822 431 337 80 5 chr3 143421455 143421654 -74615504 - L2 LINE L2 -188 3084 2871 1220 195 26 4 chr3 143421744 143422122 -74615036 + L1MB7 LINE L1 5615 6006 -168 448 263 167 19 chr3 143423303 143423459 -74613699 + MER5A DNA MER1_type 9 187 -2 314 231 145 8 chr3 143424000 143424117 -74613041 + MIR SINE MIR 129 261 -1 691 278 46 0 chr3 143424306 143424457 -74612701 - L2 LINE L2 0 3272 3115 1598 138 28 21 chr3 143424508 143424791 -74612367 - AluJo SINE Alu -15 297 13 1933 129 60 6 chr3 143424949 143425281 -74611877 - MLT1B LTR MaLR -40 350 1 21 36 0 0 chr3 143425943 143425971 -74611187 + GC_rich Low_complexity Low_complexity 1 28 0 59 53 0 0 chr3 143426042 143426136 -74611022 + GC_rich Low_complexity Low_complexity 1 94 0 246 221 29 29 chr3 143426219 143426355 -74610803 + (CGG)n Simple_repeat Simple_repeat 3 138 0 47 19 0 0 chr3 143426823 143426877 -74610281 + GC_rich Low_complexity Low_complexity 1 54 0 49 95 0 6 chr3 143427056 143427204 -74609954 + GC_rich Low_complexity Low_complexity 1 149 -29 230 54 0 27 chr3 143427204 143427241 -74609917 + (CGGGGG)n Simple_repeat Simple_repeat 6 41 0 49 95 0 6 chr3 143427241 143427271 -74609887 + GC_rich Low_complexity Low_complexity 149 178 0 249 378 14 21 chr3 143428767 143428910 -74608248 - MIR3 SINE MIR -51 157 16 2321 90 0 3 chr3 143428927 143429227 -74607931 - AluSg SINE Alu -11 299 1 180 0 0 0 chr3 143429231 143429251 -74607907 + (T)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chr3 143432545 143432565 -74604593 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 22 35 0 0 chr3 143433558 143433587 -74603571 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr3 143434549 143434584 -74602574 + AT_rich Low_complexity Low_complexity 1 35 0 520 311 72 25 chr3 143434604 143434839 -74602319 + MIR SINE MIR 5 250 -12 253 263 129 44 chr3 143435107 143435285 -74601873 + MIR3 SINE MIR 26 254 -8 21 0 0 0 chr3 143435586 143435607 -74601551 + AT_rich Low_complexity Low_complexity 1 21 0 306 233 47 23 chr3 143437599 143437685 -74599473 + L1M4 LINE L1 4723 4810 -1336 370 302 95 6 chr3 143439673 143439852 -74597306 + MIR SINE MIR 64 258 -4 25 0 0 0 chr3 143441474 143441499 -74595659 + AT_rich Low_complexity Low_complexity 1 25 0 2364 93 0 3 chr3 143442408 143442719 -74594439 - AluY SINE Alu -1 310 1 844 217 21 21 chr3 143443553 143443742 -74593416 - MER5A DNA MER1_type 0 189 1 649 220 110 0 chr3 143444107 143444289 -74592869 - MER58C DNA MER1_type 0 215 14 1204 162 5 0 chr3 143444922 143445107 -74592051 + AluSx SINE Alu 1 186 -126 428 119 0 0 chr3 143445228 143445295 -74591863 + Alu SINE Alu 238 304 -8 21 0 0 0 chr3 143445700 143445721 -74591437 + AT_rich Low_complexity Low_complexity 1 21 0 181 222 0 0 chr3 143447393 143447429 -74589729 + MIR SINE MIR 32 67 -141 189 241 0 0 chr3 143447482 143447536 -74589622 + (CATA)n Simple_repeat Simple_repeat 2 55 0 204 111 0 0 chr3 143448013 143448049 -74589109 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 368 327 42 42 chr3 143448732 143448949 -74588209 + MIR SINE MIR 34 250 -12 2414 82 3 3 chr3 143449749 143450055 -74587103 - AluSp SINE Alu -7 306 1 2458 94 0 0 chr3 143450245 143450553 -74586605 - AluSc SINE Alu -1 308 1 11926 109 59 99 chr3 143451137 143453655 -74583503 + Tigger1 DNA MER2_type 2 2417 -1 765 174 8 0 chr3 143454092 143454224 -74582934 - FLAM_A SINE Alu 0 133 1 26 30 0 0 chr3 143454434 143454467 -74582691 + AT_rich Low_complexity Low_complexity 1 33 0 461 331 138 67 chr3 143457457 143457862 -74579296 - L2 LINE L2 -14 3258 2825 222 303 207 21 chr3 143458041 143458186 -74578972 - L2 LINE L2 -574 2740 2569 253 254 56 14 chr3 143458477 143458548 -74578610 - MER21B LTR ERV1 -748 115 42 272 217 67 0 chr3 143458550 143458610 -74578548 - MER21B LTR ERV1 -774 89 26 287 231 0 15 chr3 143458646 143458711 -74578447 - MER21B LTR ERV1 -795 68 5 227 53 0 0 chr3 143458790 143458828 -74578330 + L1MA1 LINE L1 6265 6302 0 647 298 98 4 chr3 143459060 143459295 -74577863 - MIR SINE MIR -5 257 1 2046 106 66 6 chr3 143459316 143459665 -74577493 + L1MB3 LINE L1 5814 6183 0 497 295 40 60 chr3 143459691 143459891 -74577267 - MIR SINE MIR -17 245 50 1159 109 70 70 chr3 143461358 143461588 -74575570 + MER30 DNA MER1_type 1 230 0 212 0 36 0 chr3 143461735 143461763 -74575395 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1639 180 4 7 chr3 143461771 143462049 -74575109 - AluJo SINE Alu -35 277 1 546 180 0 0 chr3 143466586 143466686 -74570472 - L1MB7 LINE L1 -15 6169 6070 2556 62 0 0 chr3 143467512 143467821 -74569337 - AluY SINE Alu -2 309 1 21 36 0 0 chr3 143469706 143469734 -74567424 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr3 143469814 143469851 -74567307 + AT_rich Low_complexity Low_complexity 1 37 0 6493 68 30 51 chr3 143470035 143472309 -74564849 - SVA Other Other -518 1386 29 2212 117 0 3 chr3 143474290 143474598 -74562560 - AluSg SINE Alu -3 307 1 243 264 64 9 chr3 143474721 143474831 -74562327 - L1MC4 LINE L1 0 8042 7927 621 289 38 14 chr3 143475770 143475981 -74561177 + L2 LINE L2 1997 2212 -1102 1187 202 0 0 chr3 143475981 143476209 -74560949 - AluJb SINE Alu 0 312 85 939 285 182 49 chr3 143476212 143477164 -74559994 + L2 LINE L2 2216 3313 0 24 53 0 0 chr3 143477207 143477245 -74559913 + AT_rich Low_complexity Low_complexity 1 38 0 606 182 142 7 chr3 143478670 143478818 -74558340 + AluJb SINE Alu 123 290 -22 24 53 0 0 chr3 143479557 143479595 -74557563 + AT_rich Low_complexity Low_complexity 1 38 0 719 204 143 10 chr3 143481031 143481227 -74555931 - MIR SINE MIR -37 225 4 1711 180 24 0 chr3 143481323 143481617 -74555541 + AluJb SINE Alu 1 301 -11 1613 175 48 14 chr3 143482606 143482897 -74554261 + AluJo SINE Alu 1 301 -11 1248 149 0 11 chr3 143483263 143483451 -74553707 - AluSx SINE Alu -126 186 1 224 39 0 0 chr3 143484094 143484120 -74553038 + (T)n Simple_repeat Simple_repeat 1 26 0 763 289 65 0 chr3 143487022 143487254 -74549904 + MIR SINE MIR 11 257 -5 429 276 43 9 chr3 143488366 143488482 -74548676 - MER5A DNA MER1_type -30 159 40 180 231 19 39 chr3 143488441 143488493 -74548665 + L2 LINE L2 2659 2709 -605 * 929 27 0 0 chr3 143488931 143489042 -74548116 - L1PA4 LINE L1 0 6155 6045 1858 141 3 17 chr3 143489229 143489528 -74547630 - AluJb SINE Alu -17 295 1 3357 189 106 11 chr3 143489542 143490658 -74546500 - L1MB8 LINE L1 0 6178 4958 1896 121 88 30 chr3 143490687 143491017 -74546141 - THE1B LTR MaLR -15 349 1 887 249 36 0 chr3 143491017 143491209 -74545949 - MER58A DNA MER1_type -25 199 1 1114 178 9 70 chr3 143491998 143492228 -74544930 + AluJo SINE Alu 10 225 -87 206 407 22 0 chr3 143492486 143492577 -74544581 - L2 LINE L2 -52 3220 3128 232 197 254 14 chr3 143492938 143493009 -74544149 - L2 LINE L2 -1 3312 3225 526 269 102 11 chr3 143495268 143495454 -74541704 + MIR SINE MIR 59 261 -1 2407 45 14 10 chr3 143495931 143496221 -74540937 + AluSp SINE Alu 1 291 -22 274 270 20 20 chr3 143497291 143497391 -74539767 + (TA)n Simple_repeat Simple_repeat 1 100 0 1753 146 69 9 chr3 143497731 143498081 -74539077 + L1MA7 LINE L1 5896 6266 -25 435 278 70 0 chr3 143498387 143498502 -74538656 + MIR SINE MIR 61 183 -79 211 402 60 0 chr3 143498730 143498847 -74538311 + MIR SINE MIR 2 125 -137 1963 165 94 2 chr3 143499823 143500229 -74536929 - L1MB5 LINE L1 0 6174 5732 2535 50 0 0 chr3 143500378 143500676 -74536482 + AluY SINE Alu 1 298 -13 364 261 149 90 chr3 143501003 143501191 -74535967 + L2 LINE L2 3055 3253 -19 2428 71 0 0 chr3 143502388 143502683 -74534475 + AluY SINE Alu 1 295 -16 2070 132 13 0 chr3 143503605 143503785 -74533373 - AluSx SINE Alu -5 307 120 216 0 0 0 chr3 143503785 143503809 -74533349 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2070 132 13 0 chr3 143503809 143503931 -74533227 - AluSx SINE Alu -192 120 1 1852 126 89 0 chr3 143503931 143504201 -74532957 - AluSx SINE Alu -14 298 4 1987 129 0 57 chr3 143504206 143504524 -74532634 - AluSx SINE Alu -10 302 3 1590 161 47 11 chr3 143505247 143505526 -74531632 + AluJo SINE Alu 2 290 -22 683 188 38 0 chr3 143506911 143507044 -74530114 - MER119 DNA MER1_type 0 583 446 371 196 108 70 chr3 143507083 143507266 -74529892 + FAM SINE Alu 33 162 -13 266 214 0 0 chr3 143507309 143507351 -74529807 - MER119 DNA MER1_type -540 43 2 227 224 0 0 chr3 143510296 143510345 -74526813 + HsTC2 DNA Tc2 360 408 -1490 618 307 19 55 chr3 143510688 143510945 -74526213 - MIR SINE MIR 0 262 15 219 255 184 10 chr3 143511688 143511786 -74525372 + MIR SINE MIR 78 192 -70 922 163 84 128 chr3 143512012 143512418 -74524740 + MLT1B LTR MaLR 3 390 0 779 239 177 45 chr3 143514506 143514901 -74522257 + HAL1 LINE L1 885 1226 -1281 3873 118 34 25 chr3 143514901 143515546 -74521612 - MER39B LTR ERV1 0 653 3 3463 108 85 30 chr3 143515546 143515981 -74521177 + MER41B LTR ERV1 1 480 -155 2246 108 0 13 chr3 143515981 143516287 -74520871 + AluSg SINE Alu 1 302 -8 3463 108 85 30 chr3 143516287 143516453 -74520705 + MER41B LTR ERV1 480 635 0 779 239 177 45 chr3 143516453 143516812 -74520346 + HAL1 LINE L1 1225 1740 -767 594 125 10 10 chr3 143516812 143516916 -74520242 - LTR49 LTR ERV1 0 595 492 913 144 20 13 chr3 143516916 143517069 -74520089 + FRAM SINE Alu 15 168 -8 300 119 186 0 chr3 143517071 143517130 -74520028 - MER4D LTR ERV1 -550 353 284 423 271 40 60 chr3 143517140 143517339 -74519819 + HAL1 LINE L1 1794 1988 -519 416 184 143 20 chr3 143517664 143517762 -74519396 - FLAM_A SINE Alu -7 135 26 870 240 180 47 chr3 143517762 143517932 -74519226 - MER41C LTR ERV1 -1 553 407 1004 47 78 0 chr3 143517932 143518061 -74519097 + MER85 DNA T2_type 1 139 0 870 240 180 47 chr3 143518061 143518378 -74518780 - MER41C LTR ERV1 -147 407 1 22 80 0 0 chr3 143518521 143518571 -74518587 + AT_rich Low_complexity Low_complexity 1 50 0 1092 152 17 178 chr3 143518700 143519114 -74518044 + LTR28 LTR ERV1 102 595 -292 2125 137 0 7 chr3 143519493 143519793 -74517365 - AluJb SINE Alu -14 298 1 1160 191 30 128 chr3 143520179 143520546 -74516612 + LTR28 LTR ERV1 687 1017 -3 290 276 118 29 chr3 143520577 143520747 -74516411 + L2 LINE L2 2463 2647 -667 183 350 60 0 chr3 143520796 143520896 -74516262 + L2 LINE L2 2740 2845 -469 1782 168 0 20 chr3 143522281 143522585 -74514573 - AluJb SINE Alu -14 298 1 1103 97 0 0 chr3 143522819 143522964 -74514194 - AluSc SINE Alu -8 301 157 3258 109 111 38 chr3 143523098 143523657 -74513501 + MER4A LTR ERV1 1 600 0 395 206 7 73 chr3 143523803 143523899 -74513259 + MER3 DNA MER1_type 42 128 -34 1933 152 0 0 chr3 143523899 143524189 -74512969 - AluJb SINE Alu -22 290 1 395 206 7 73 chr3 143524189 143524228 -74512930 + MER3 DNA MER1_type 128 168 -41 1098 135 158 60 chr3 143524235 143524582 -74512576 + MER3 DNA MER1_type 2244 2624 0 297 250 43 11 chr3 143524990 143525082 -74512076 + MER5B DNA MER1_type 84 178 0 2319 86 10 3 chr3 143525089 143525391 -74511767 - AluSx SINE Alu -8 304 1 1514 241 47 47 chr3 143525512 143526005 -74511153 - L2 LINE L2 0 3313 2821 758 260 220 31 chr3 143526873 143527108 -74510050 - L2 LINE L2 0 3313 3124 2295 99 3 0 chr3 143527108 143527401 -74509757 - AluSx SINE Alu -18 294 1 758 260 220 31 chr3 143527401 143527780 -74509378 - L2 LINE L2 -189 3124 2590 1433 167 12 4 chr3 143529371 143529611 -74507547 - AluJo SINE Alu -7 305 64 237 277 24 69 chr3 143531238 143531278 -74505880 - MIR SINE MIR -14 248 208 1505 159 43 47 chr3 143531278 143531579 -74505579 - AluJo SINE Alu -12 300 1 237 277 24 69 chr3 143531579 143531707 -74505451 - MIR SINE MIR -54 208 47 4651 223 103 25 chr3 143532567 143532978 -74504180 - L1ME1 LINE L1 -28 6138 5760 2201 86 10 3 chr3 143532978 143533268 -74503890 - AluSg SINE Alu -11 299 8 4651 223 103 25 chr3 143533268 143535418 -74501740 - L1ME1 LINE L1 -406 5760 3371 5832 190 86 43 chr3 143535593 143536486 -74500672 + L1MD1 LINE L1 20 873 -5667 1621 185 148 5 chr3 143536486 143536864 -74500294 + MSTB1 LTR MaLR 1 432 0 5832 190 86 43 chr3 143536864 143537856 -74499302 + L1MD1 LINE L1 873 2238 -4302 2219 113 3 0 chr3 143537856 143538149 -74499009 - AluSx SINE Alu -18 294 1 5832 190 86 43 chr3 143538149 143538581 -74498577 + L1MD1 LINE L1 2238 2650 -3890 4639 193 91 19 chr3 143538615 143538909 -74498249 + L1MD1 LINE L1 4395 4666 -1970 1474 114 5 9 chr3 143538909 143539119 -74498039 + AluSq SINE Alu 95 303 -10 4639 193 91 19 chr3 143539119 143540921 -74496237 + L1MD1 LINE L1 4666 6636 0 241 111 0 0 chr3 143541152 143541188 -74495970 + HY5 scRNA scRNA 1 36 -48 23 33 0 0 chr3 143541328 143541358 -74495800 + AT_rich Low_complexity Low_complexity 1 30 0 5530 115 13 5 chr3 143541375 143542529 -74494629 - L1PA13 LINE L1 -2 6161 4997 6591 147 27 9 chr3 143542529 143543747 -74493411 + L1PA13 LINE L1 3737 4976 -1170 1778 96 11 4 chr3 143543788 143544048 -74493110 - L1PA8 LINE L1 -2 6170 5909 1431 178 29 3 chr3 143544123 143544437 -74492721 + MER33 DNA MER1_type 3 324 0 2023 110 7 42 chr3 143545708 143546018 -74491140 - AluSx SINE Alu -13 299 1 500 315 87 16 chr3 143546126 143546380 -74490778 - L3 LINE CR1 -85 1492 1221 400 38 0 238 chr3 143547597 143547702 -74489456 - MADE1 DNA Mariner 0 80 1 254 362 13 59 chr3 143548289 143548441 -74488717 - MIR3 SINE MIR -48 160 16 1250 73 0 0 chr3 143548948 143549099 -74488059 + AluSq/x SINE Alu 1 151 -162 30 45 0 0 chr3 143549431 143549475 -74487683 + AT_rich Low_complexity Low_complexity 1 44 0 25 65 0 0 chr3 143550840 143550886 -74486272 + AT_rich Low_complexity Low_complexity 1 46 0 1138 202 48 55 chr3 143551211 143551632 -74485526 + L1MC5 LINE L1 7373 7790 -171 1362 265 147 12 chr3 143551776 143552424 -74484734 + HAL1 LINE L1 1196 1930 -577 389 296 28 57 chr3 143553062 143553238 -74483920 + HAL1 LINE L1 2226 2396 -111 13172 42 1 5 chr3 143553843 143555583 -74481575 - L1P LINE L1 -2416 3730 1999 8382 32 0 0 chr3 143555583 143557373 -74479785 + L1PA4 LINE L1 4358 6152 -3 2362 84 0 16 chr3 143557682 143557992 -74479166 + AluSq SINE Alu 1 305 -8 2253 249 124 19 chr3 143558086 143559064 -74478094 - L1ME LINE L1 -4950 1130 72 342 45 0 0 chr3 143559064 143559108 -74478050 + (TATG)n Simple_repeat Simple_repeat 2 45 0 2253 249 124 19 chr3 143559108 143559166 -74477992 - L1ME LINE L1 -6008 72 21 1381 218 47 39 chr3 143559776 143560138 -74477020 + MLT1A1 LTR MaLR 1 365 0 6236 76 11 0 chr3 143560590 143561121 -74476037 - L1PA14 LINE L1 -9 6152 5629 1880 117 44 13 chr3 143561121 143561419 -74475739 - AluSx SINE Alu -5 307 1 6236 76 11 0 chr3 143561419 143562245 -74474913 - L1PA14 LINE L1 -532 5629 4784 1624 215 0 7 chr3 143562480 143562787 -74474371 + AluJb SINE Alu 1 305 -7 354 263 104 68 chr3 143563877 143564215 -74472943 + L1MD2 LINE L1 4981 5330 -816 453 325 8 0 chr3 143564400 143564520 -74472638 + L1MD2 LINE L1 5483 5603 -2205 418 213 0 0 chr3 143564522 143564602 -74472556 + FLAM_C SINE Alu 28 107 -36 283 341 0 0 chr3 143565359 143565447 -74471711 - L2 LINE L2 0 3313 3226 339 359 22 23 chr3 143565503 143565696 -74471462 - L2 LINE L2 -199 3073 2881 1284 285 50 30 chr3 143565765 143566281 -74470877 - L2 LINE L2 -1 3312 2784 6113 76 42 5 chr3 143566292 143567297 -74469861 + L1PA13 LINE L1 5108 6144 -19 255 178 0 0 chr3 143569274 143569319 -74467839 - L2 LINE L2 -5 3308 3264 826 173 0 0 chr3 143569903 143570036 -74467122 + FLAM_C SINE Alu 1 133 -10 35 33 0 17 chr3 143570060 143570098 -74467060 + AT_rich Low_complexity Low_complexity 1 39 -20 2256 86 3 3 chr3 143570098 143570388 -74466770 + AluSg SINE Alu 1 290 -20 35 33 0 17 chr3 143570388 143570409 -74466749 + AT_rich Low_complexity Low_complexity 39 59 0 317 335 37 28 chr3 143570409 143570627 -74466531 - L2 LINE L2 -685 2629 2410 50 42 0 0 chr3 143570735 143570806 -74466352 + AT_rich Low_complexity Low_complexity 1 71 0 23 86 0 0 chr3 143570895 143570953 -74466205 + AT_rich Low_complexity Low_complexity 1 58 0 795 185 38 8 chr3 143572578 143572838 -74464320 + L1MD2 LINE L1 6041 6359 0 22 0 0 0 chr3 143572902 143572924 -74464234 + AT_rich Low_complexity Low_complexity 1 22 0 2150 124 0 0 chr3 143573677 143573975 -74463183 - AluSq SINE Alu -15 298 1 1237 184 74 37 chr3 143574992 143575318 -74461840 + MER44D DNA MER2_type 2 609 0 23 54 0 0 chr3 143576191 143576228 -74460930 + AT_rich Low_complexity Low_complexity 1 37 0 248 365 42 0 chr3 143576731 143576827 -74460331 + L3 LINE CR1 1459 1558 -19 21541 106 12 14 chr3 143577436 143581080 -74456078 + L1PA7 LINE L1 740 4386 -2075 19678 37 0 0 chr3 143581080 143584260 -74452898 + L1PA4 LINE L1 2970 6153 -2 9657 76 22 1 chr3 143584307 143584488 -74452670 + L1PA7 LINE L1 4383 4559 -1910 2176 128 0 0 chr3 143584488 143584793 -74452365 + AluSq SINE Alu 1 305 -8 9657 76 22 1 chr3 143584793 143586691 -74450467 + L1PA7 LINE L1 4559 6467 -2 680 210 0 151 chr3 143587272 143587449 -74449709 - MER112 DNA MER1_type -23 237 113 213 39 0 0 chr3 143587449 143587475 -74449683 + (TCCA)n Simple_repeat Simple_repeat 4 29 0 680 210 0 151 chr3 143587475 143587568 -74449590 - MER112 DNA MER1_type -147 113 8 467 317 30 24 chr3 143588041 143588208 -74448950 + MER5A DNA MER1_type 13 180 -9 1519 261 104 36 chr3 143588278 143589139 -74448019 + L2 LINE L2 2420 3310 -3 745 292 59 86 chr3 143590646 143591626 -74445532 + L1MEd LINE L1 6 959 -5160 248 273 247 20 chr3 143591626 143591776 -74445382 + MER5B DNA MER1_type 1 184 -5 758 277 44 7 chr3 143591780 143592076 -74445082 + L1MEd LINE L1 951 1257 -4862 299 91 0 23 chr3 143592126 143592170 -74444988 + tRNA-Met-e tRNA tRNA 1 43 -32 475 261 94 9 chr3 143592175 143592419 -74444739 + L1MEd LINE L1 1326 1633 -4604 1749 141 0 70 chr3 143592570 143592869 -74444289 + AluSx SINE Alu 23 300 -12 324 340 20 0 chr3 143593009 143593109 -74444049 - L1ME LINE L1 -508 5613 5512 26 30 0 0 chr3 143593411 143593444 -74443714 + AT_rich Low_complexity Low_complexity 1 33 0 1459 183 42 14 chr3 143594908 143595197 -74441961 + AluJo SINE Alu 4 300 -12 1052 78 0 0 chr3 143595197 143595326 -74441832 + AluSg SINE Alu 1 129 -181 1759 139 17 3 chr3 143595448 143595735 -74441423 - AluJb SINE Alu -15 297 7 25 31 0 0 chr3 143596114 143596146 -74441012 + AT_rich Low_complexity Low_complexity 1 32 0 29 28 0 0 chr3 143596414 143596450 -74440708 + AT_rich Low_complexity Low_complexity 1 36 0 224 336 104 0 chr3 143596567 143596701 -74440457 - MIR3 SINE MIR -7 201 54 273 297 41 62 chr3 143596816 143596961 -74440197 + L2 LINE L2 3172 3313 0 1929 120 73 0 chr3 143597837 143598153 -74439005 + MER61C LTR ERV1 86 424 -10 480 92 0 0 chr3 143598304 143598444 -74438714 + L1PA8 LINE L1 5890 6172 0 2286 76 3 7 chr3 143599926 143600216 -74436942 - AluSx SINE Alu -23 289 1 249 292 46 0 chr3 143600729 143600794 -74436364 - L2 LINE L2 0 3272 3205 1735 173 25 3 chr3 143601552 143601835 -74435323 + AluJo SINE Alu 1 289 -23 599 82 0 0 chr3 143601835 143601920 -74435238 + L1PA5 LINE L1 6066 6150 -4 193 75 50 0 chr3 143601946 143601986 -74435172 + A-rich Low_complexity Low_complexity 2 43 0 2139 53 0 8 chr3 143602844 143603106 -74434052 - AluY SINE Alu -15 296 37 9805 28 4 0 chr3 143603246 143604416 -74432742 - L1PA4 LINE L1 -1404 4742 3568 7544 28 2 0 chr3 143604416 143605822 -74431336 + L1PA4 LINE L1 4743 6152 -3 216 103 26 0 chr3 143605829 143605883 -74431275 + A-rich Low_complexity Low_complexity 1 55 0 445 257 125 14 chr3 143605967 143606111 -74431047 - L2 LINE L2 -553 2761 2602 659 307 60 56 chr3 143606233 143606484 -74430674 + MIR SINE MIR 5 256 -6 31 44 0 0 chr3 143606602 143606647 -74430511 + AT_rich Low_complexity Low_complexity 1 45 0 200 317 10 59 chr3 143607639 143607740 -74429418 - L2 LINE L2 -1911 1403 1308 24 32 0 0 chr3 143607930 143607961 -74429197 + AT_rich Low_complexity Low_complexity 1 31 0 519 185 43 49 chr3 143608993 143609155 -74428003 + L1MD3 LINE L1 7835 7995 0 201 224 0 52 chr3 143609157 143609215 -74427943 - MIR SINE MIR -141 121 67 207 353 59 0 chr3 143609302 143609370 -74427788 - L2 LINE L2 -55 3217 3146 213 283 0 33 chr3 143610635 143610695 -74426463 + MIR SINE MIR 19 76 -132 315 121 0 0 chr3 143610720 143610778 -74426380 + (CA)n Simple_repeat Simple_repeat 1 58 0 1950 104 89 0 chr3 143610876 143611145 -74426013 - AluSg SINE Alu -17 293 1 429 266 141 0 chr3 143611393 143611521 -74425637 + MIR SINE MIR 47 192 -70 2313 70 0 3 chr3 143612019 143612305 -74424853 + AluY SINE Alu 1 285 -26 1209 98 0 0 chr3 143612318 143612492 -74424666 + (GAA)n Simple_repeat Simple_repeat 1 174 0 22 0 0 0 chr3 143615206 143615228 -74421930 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr3 143615430 143615455 -74421703 + AT_rich Low_complexity Low_complexity 1 25 0 2257 40 61 0 chr3 143616740 143617018 -74420140 - AluY SINE Alu -15 296 2 478 106 0 0 chr3 143617087 143617153 -74420005 - Alu SINE Alu -243 67 2 2704 171 49 18 chr3 143617308 143617858 -74419300 + L1MB7 LINE L1 5598 6164 -20 2233 148 19 17 chr3 143618479 143618856 -74418302 - MLT1A1 LTR MaLR -1 427 1 4012 185 27 54 chr3 143619551 143620547 -74416611 + LTR5 LTR ERVK 1 969 0 3030 273 48 13 chr3 143621479 143622423 -74414735 + L2 LINE L2 23 999 -2315 2808 88 31 3 chr3 143622424 143622810 -74414348 + THE1B-int LTR MaLR 1184 1580 0 2641 94 0 24 chr3 143622810 143623181 -74413977 + THE1B LTR MaLR 1 362 -2 619 294 48 27 chr3 143623183 143623370 -74413788 + L2 LINE L2 1004 1194 -2120 632 272 58 114 chr3 143623383 143623864 -74413294 - LTR16A1 LTR ERVL 0 457 4 3007 245 224 9 chr3 143623871 143624949 -74412209 + L2 LINE L2 1205 2514 -800 732 187 8 8 chr3 143624957 143625080 -74412078 - MER7A DNA MER2_type 0 336 214 1542 133 0 17 chr3 143625668 143625902 -74411256 - MER7A DNA MER2_type -117 229 2 770 293 158 36 chr3 143625902 143626566 -74410592 + L2 LINE L2 2533 3288 -25 1069 221 52 87 chr3 143626886 143627250 -74409908 - L1ME3A LINE L1 -315 5855 5511 2110 102 10 10 chr3 143627250 143627544 -74409614 - AluSx SINE Alu -16 296 3 1069 221 52 87 chr3 143627544 143627662 -74409496 - L1ME3A LINE L1 -659 5511 5390 983 256 190 23 chr3 143627768 143628499 -74408659 - L1ME3A LINE L1 -991 5155 4303 2153 105 24 3 chr3 143628621 143628917 -74408241 - AluSx SINE Alu -10 302 1 329 279 66 22 chr3 143628936 143629072 -74408086 - L1ME3A LINE L1 -3366 2780 2639 212 277 143 18 chr3 143629209 143629321 -74407837 - MIR SINE MIR -85 177 52 212 316 26 0 chr3 143629625 143629701 -74407457 - MIR SINE MIR -124 138 61 198 313 250 0 chr3 143629845 143629941 -74407217 - MIR3 SINE MIR -46 162 43 770 284 44 13 chr3 143631991 143632220 -74404938 + MIR SINE MIR 3 238 -24 480 223 169 0 chr3 143632250 143632380 -74404778 - MIR SINE MIR -2 260 109 207 289 252 7 chr3 143633113 143633248 -74403910 - L2 LINE L2 -22 3291 3124 304 276 81 41 chr3 143633501 143633624 -74403534 + MIR SINE MIR 18 145 -117 3707 253 161 50 chr3 143633720 143635265 -74401893 + HAL1 LINE L1 58 1892 -615 686 226 66 22 chr3 143635265 143635446 -74401712 - MER5A DNA MER1_type 0 189 1 3707 253 161 50 chr3 143635446 143635962 -74401196 + HAL1 LINE L1 1892 2349 -158 258 219 55 41 chr3 143635972 143636045 -74401113 + HAL1 LINE L1 2401 2474 -33 216 135 96 39 chr3 143636307 143636359 -74400799 + MER5B DNA MER1_type 2 56 -122 572 291 11 16 chr3 143637678 143637867 -74399291 - MER5A DNA MER1_type -1 188 1 308 273 367 0 chr3 143637880 143638008 -74399150 + MER5A DNA MER1_type 9 183 -6 259 179 89 0 chr3 143638015 143638071 -74399087 - MER5A DNA MER1_type -120 69 9 692 242 75 0 chr3 143638087 143638248 -74398910 + MER5B DNA MER1_type 1 173 -5 383 265 108 0 chr3 143638442 143638544 -74398614 - MIR SINE MIR -62 146 34 351 0 0 0 chr3 143638913 143638952 -74398206 + (TG)n Simple_repeat Simple_repeat 1 39 0 513 281 162 11 chr3 143639258 143639443 -74397715 + MIR SINE MIR 2 214 -48 1235 196 36 84 chr3 143639821 143640035 -74397123 - MER58B DNA MER1_type -2079 341 149 1669 170 10 7 chr3 143640035 143640323 -74396835 - AluJb SINE Alu -23 289 1 1235 196 36 84 chr3 143640323 143640466 -74396692 - MER58B DNA MER1_type -2271 149 1 832 169 0 7 chr3 143640788 143640924 -74396234 - FRAM SINE Alu -22 154 20 228 261 43 9 chr3 143643072 143643187 -74393971 + (TA)n Simple_repeat Simple_repeat 2 120 0 278 262 153 53 chr3 143643960 143644101 -74393057 - L1MC/D LINE L1 -2004 5804 5679 2001 164 0 0 chr3 143644101 143644400 -74392758 - AluJb SINE Alu -13 299 1 278 262 153 53 chr3 143644400 143644418 -74392740 - L1MC/D LINE L1 -2129 5679 5664 1607 167 27 37 chr3 143644418 143644718 -74392440 - AluJb SINE Alu -15 297 1 278 262 153 53 chr3 143644718 143644935 -74392223 - L1MC/D LINE L1 -2144 5664 5389 514 91 39 0 chr3 143645065 143645142 -74392016 + MADE1 DNA Mariner 1 80 0 1780 138 11 15 chr3 143645158 143645427 -74391731 + AluJb SINE Alu 1 268 -44 550 159 68 61 chr3 143645442 143645605 -74391553 + L1ME3 LINE L1 5987 6169 -1 488 254 22 0 chr3 143645639 143645773 -74391385 + MER104 DNA Tc2 19 155 -25 253 184 61 0 chr3 143645792 143645841 -74391317 - L2 LINE L2 -1 3271 3220 2274 89 0 0 chr3 143649395 143649702 -74387456 - AluSx SINE Alu 0 307 1 2120 97 0 0 chr3 143649762 143650029 -74387129 + AluSg SINE Alu 23 289 -21 446 252 199 7 chr3 143650740 143650891 -74386267 - MER5A DNA MER1_type 0 189 10 1974 103 26 7 chr3 143650975 143651274 -74385884 - AluSc SINE Alu 0 306 3 2122 131 0 13 chr3 143652009 143652321 -74384837 - AluSx SINE Alu -4 308 1 22 0 0 0 chr3 143655133 143655155 -74382003 + AT_rich Low_complexity Low_complexity 1 22 0 1396 181 0 9 chr3 143655943 143656169 -74380989 - AluJo SINE Alu -88 224 1 23 68 0 0 chr3 143656174 143656218 -74380940 + AT_rich Low_complexity Low_complexity 1 44 0 2384 75 7 0 chr3 143656523 143656816 -74380342 + AluY SINE Alu 1 295 -16 717 271 77 5 chr3 143658579 143658786 -74378372 - MER58A DNA MER1_type 0 224 3 2118 127 38 3 chr3 143658790 143659137 -74378021 + MER46B DNA MER2_type 2 235 -1 290 258 0 15 chr3 143659153 143659219 -74377939 - MIR SINE MIR -177 85 21 344 280 64 32 chr3 143660160 143660285 -74376873 + MIR SINE MIR 58 186 -76 22 0 0 0 chr3 143661703 143661725 -74375433 + AT_rich Low_complexity Low_complexity 1 22 0 1725 137 60 109 chr3 143662699 143663065 -74374093 + Tigger3(Golem) DNA MER2_type 1 3029 0 22 0 0 0 chr3 143663169 143663191 -74373967 + AT_rich Low_complexity Low_complexity 1 22 0 852 75 17 0 chr3 143663192 143663312 -74373846 - L1MB1 LINE L1 -4 6164 6043 353 157 14 14 chr3 143663318 143663388 -74373770 + AluJ/FRAM SINE Alu 232 301 -1 484 299 100 56 chr3 143663859 143664290 -74372868 + L1MEd LINE L1 1 450 -5669 2335 87 0 0 chr3 143664347 143664647 -74372511 + AluY SINE Alu 1 300 -11 403 244 135 42 chr3 143664731 143665108 -74372050 + L1M4 LINE L1 4637 5048 -1098 207 0 0 0 chr3 143665111 143665134 -74372024 + (TG)n Simple_repeat Simple_repeat 2 24 0 492 224 82 52 chr3 143665165 143665472 -74371686 + L1P5 LINE L1 5159 5460 -691 203 343 67 9 chr3 143665913 143666018 -74371140 - L2 LINE L2 -1 3271 3161 1749 157 7 13 chr3 143666407 143666706 -74370452 + AluJb SINE Alu 1 297 -15 722 153 68 55 chr3 143668555 143668718 -74368440 + MER106B DNA MER1_type 895 1059 0 2134 106 7 3 chr3 143668742 143669035 -74368123 - AluSg SINE Alu -16 294 1 2185 111 3 3 chr3 143669036 143669333 -74367825 - AluSq SINE Alu -16 297 1 475 302 44 68 chr3 143669395 143669657 -74367501 + L2 LINE L2 2243 2497 -817 2109 92 0 4 chr3 143669657 143669929 -74367229 - AluSx SINE Alu -20 292 22 475 302 44 68 chr3 143669929 143670004 -74367154 + L2 LINE L2 2497 2572 -742 210 333 38 53 chr3 143672004 143672136 -74365022 + L2 LINE L2 3180 3309 -4 2380 68 7 13 chr3 143672496 143672803 -74364355 + AluY SINE Alu 1 305 -6 1104 176 34 0 chr3 143672811 143673044 -74364114 + L1 LINE L1 4094 4334 -1812 621 49 0 0 chr3 143673045 143673126 -74364032 + (TTTC)n Simple_repeat Simple_repeat 4 84 0 705 169 25 0 chr3 143673126 143673244 -74363914 - FRAM SINE Alu -32 144 24 4208 191 22 44 chr3 143673244 143674344 -74362814 + L1 LINE L1 4328 5403 -743 210 333 38 53 chr3 143675827 143675959 -74361199 + L2 LINE L2 3180 3309 -4 2345 56 0 14 chr3 143676319 143676632 -74360526 + AluY SINE Alu 1 309 0 430 299 76 14 chr3 143677503 143677647 -74359511 + MIR SINE MIR 20 172 -90 * 823 258 78 14 chr3 143677644 143677861 -74359297 - MIR SINE MIR 0 262 32 22 35 0 0 chr3 143677927 143677956 -74359202 + AT_rich Low_complexity Low_complexity 1 29 0 1868 185 0 6 chr3 143678146 143678460 -74358698 - AluJb SINE Alu 0 312 1 25 95 0 0 chr3 143679118 143679192 -74357966 + AT_rich Low_complexity Low_complexity 1 74 0 36 62 0 0 chr3 143679724 143679788 -74357370 + AT_rich Low_complexity Low_complexity 1 64 0 823 163 52 6 chr3 143680472 143680649 -74356509 - MIR SINE MIR -30 232 53 2456 84 0 0 chr3 143680657 143680967 -74356191 + AluY SINE Alu 1 310 -1 1119 175 0 46 chr3 143681845 143682062 -74355096 + AluJo SINE Alu 86 292 -20 1360 276 73 14 chr3 143682177 143682659 -74354499 + L2 LINE L2 2464 2973 -341 419 49 0 0 chr3 143683852 143683913 -74353245 - AluY SINE Alu -2 310 250 229 111 0 0 chr3 143683913 143683949 -74353209 + Alu SINE Alu 258 293 -6 394 277 10 0 chr3 143683961 143684062 -74353096 - MER58A DNA MER1_type -5 102 1 722 176 16 8 chr3 143684271 143684396 -74352762 + MER5A DNA MER1_type 61 186 -3 328 169 62 0 chr3 143684577 143684642 -74352516 + MER5A DNA MER1_type 119 187 -2 374 361 16 6 chr3 143684808 143684991 -74352167 + MIR3 SINE MIR 18 202 -6 4016 170 32 53 chr3 143685061 143685206 -74351952 + L1MB8 LINE L1 5253 5400 -778 2156 100 21 15 chr3 143685206 143685546 -74351612 + L1MA1 LINE L1 5961 6302 0 4016 170 32 53 chr3 143685546 143686347 -74350811 + L1MB8 LINE L1 5400 6177 -1 2146 132 0 0 chr3 143686604 143686900 -74350258 - AluJb SINE Alu -16 296 1 394 202 64 9 chr3 143687325 143687434 -74349724 + L1MC5 LINE L1 7739 7853 -108 27 96 0 0 chr3 143688648 143688731 -74348427 + AT_rich Low_complexity Low_complexity 1 83 0 253 152 0 0 chr3 143688880 143688926 -74348232 - Alu SINE Alu -1 301 256 964 217 8 79 chr3 143689671 143689802 -74347356 - MER58A DNA MER1_type -2197 223 115 2394 93 0 0 chr3 143689802 143690103 -74347055 + AluY SINE Alu 1 301 -10 964 217 8 79 chr3 143690103 143690211 -74346947 - MER58A DNA MER1_type -2305 115 1 21 0 0 0 chr3 143690720 143690741 -74346417 + AT_rich Low_complexity Low_complexity 1 21 0 232 171 0 0 chr3 143691299 143691340 -74345818 - MER58B DNA MER1_type -4 337 297 1165 206 65 18 chr3 143691389 143691666 -74345492 - MER58B DNA MER1_type -51 290 1 978 197 5 56 chr3 143691834 143692078 -74345080 + AluJo SINE Alu 82 314 0 21 36 0 0 chr3 143692344 143692372 -74344786 + AT_rich Low_complexity Low_complexity 1 28 0 803 170 7 7 chr3 143693179 143693320 -74343838 + MER2 DNA MER2_type 1 141 -204 901 117 216 0 chr3 143693333 143693495 -74343663 - MER30 DNA MER1_type -33 197 1 486 90 13 0 chr3 143693495 143693573 -74343585 + MER2 DNA MER2_type 132 210 -135 200 109 0 43 chr3 143693574 143693620 -74343538 + (TTTTTA)n Simple_repeat Simple_repeat 2 45 0 22 35 0 0 chr3 143694615 143694644 -74342514 + AT_rich Low_complexity Low_complexity 1 29 0 2406 73 10 0 chr3 143695070 143695371 -74341787 - AluSc SINE Alu -5 304 1 910 250 158 39 chr3 143695804 143696140 -74341018 + MLT1J LTR MaLR 5 380 -131 205 355 45 9 chr3 143696506 143696616 -74340542 - L3b LINE CR1 -286 1297 1184 294 223 38 59 chr3 143696649 143696754 -74340404 - MER20B DNA MER1_type -36 183 77 222 37 0 0 chr3 143697210 143697237 -74339921 + (TA)n Simple_repeat Simple_repeat 1 27 0 320 241 23 35 chr3 143697525 143697612 -74339546 + L2 LINE L2 3186 3271 -1 228 35 0 0 chr3 143697971 143698000 -74339158 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2468 68 0 0 chr3 143698240 143698535 -74338623 - AluSx SINE Alu -17 295 1 658 152 152 14 chr3 143698973 143699118 -74338040 + FRAM SINE Alu 2 166 0 29 78 0 0 chr3 143699467 143699531 -74337627 + GC_rich Low_complexity Low_complexity 1 64 0 265 203 51 0 chr3 143699720 143699799 -74337359 + (CGGAA)n Simple_repeat Simple_repeat 1 83 0 397 159 83 19 chr3 143699844 143700001 -74337157 + (CGGGG)n Simple_repeat Simple_repeat 5 171 0 463 206 56 56 chr3 143700026 143700206 -74336952 + (CGGGG)n Simple_repeat Simple_repeat 1 180 0 180 143 0 0 chr3 143700532 143700560 -74336598 - L2 LINE L2 -15 3257 3230 340 151 58 81 chr3 143700647 143700733 -74336425 - LTR65 LTR ERV1 -14 655 572 1701 43 19 5 chr3 143701362 143701570 -74335588 + AluY SINE Alu 86 296 -15 969 192 0 17 chr3 143701763 143701935 -74335223 - MER45A DNA AcHobo -6 172 4 1755 235 54 22 chr3 143701936 143702406 -74334752 + MLT1H1 LTR MaLR 58 497 -8 2276 71 3 7 chr3 143702461 143702756 -74334402 - AluSg SINE Alu -16 294 1 185 192 0 58 chr3 143702869 143702921 -74334237 - MER5A DNA MER1_type -105 84 36 466 268 183 7 chr3 143702989 143703142 -74334016 + MER5A DNA MER1_type 9 188 -1 835 213 0 33 chr3 143703152 143703335 -74333823 + MER5B DNA MER1_type 2 178 0 952 208 94 0 chr3 143704003 143704205 -74332953 - MER58A DNA MER1_type -3 221 1 377 313 71 15 chr3 143704214 143704381 -74332777 + MER5B DNA MER1_type 2 188 -1 1916 130 10 16 chr3 143705597 143705905 -74331253 + AluJb SINE Alu 1 306 -6 362 248 59 10 chr3 143706394 143706495 -74330663 + MIR SINE MIR 91 196 -66 4792 129 32 25 chr3 143706884 143707721 -74329437 - L1MA8 LINE L1 -3 6288 5446 2473 140 122 7 chr3 143707784 143708228 -74328930 + LTR44 LTR ERV1 25 519 0 1602 159 70 48 chr3 143709677 143710035 -74327123 + LTR49-int LTR ERV1 2741 3106 -3225 * 2134 179 25 44 chr3 143710029 143710554 -74326604 + LTR49-int LTR ERV1 1229 1743 -6377 21 0 0 0 chr3 143710570 143710591 -74326567 + AT_rich Low_complexity Low_complexity 1 21 0 1541 167 13 47 chr3 143710591 143711171 -74325987 + LTR49-int LTR ERV1 1720 2447 -4311 323 152 209 0 chr3 143711172 143711277 -74325881 + LTR49-int LTR ERV1 3895 4021 -2577 * 6895 165 51 30 chr3 143711245 143712998 -74324160 + LTR49-int LTR ERV1 2638 5679 -563 2136 133 121 79 chr3 143713260 143713756 -74323402 + LTR44 LTR ERV1 3 519 0 4142 149 36 64 chr3 143713757 143714086 -74323072 - L1MA8 LINE L1 -723 5448 5112 184 29 29 29 chr3 143714086 143714120 -74323038 + (TTTTG)n Simple_repeat Simple_repeat 5 38 0 4142 149 36 64 chr3 143714120 143714812 -74322346 - L1MA8 LINE L1 -1059 5112 4472 1982 122 138 26 chr3 143715081 143715466 -74321692 - MSTA LTR MaLR 0 428 1 472 235 16 112 chr3 143716233 143716421 -74320737 + MIR SINE MIR 36 200 -62 297 181 35 18 chr3 143717896 143718067 -74319091 + (TA)n Simple_repeat Simple_repeat 2 175 0 473 344 40 12 chr3 143718069 143718322 -74318836 - L1M4c LINE L1 -4233 2330 2071 38551 82 4 7 chr3 143718462 143724624 -74312534 - L1PA6 LINE L1 0 6154 11 729 279 73 51 chr3 143724633 143724806 -74312352 - L1M4c LINE L1 -4628 1756 1588 2196 122 0 0 chr3 143724806 143725101 -74312057 - AluSx SINE Alu -17 295 1 729 279 73 51 chr3 143725101 143725474 -74311684 - L1M4c LINE L1 -4796 1588 1211 29 28 0 0 chr3 143726246 143726282 -74310876 + AT_rich Low_complexity Low_complexity 1 36 0 1618 224 85 69 chr3 143726438 143726527 -74310631 - L1ME2 LINE L1 -5 6159 6073 1122 219 82 53 chr3 143726527 143726906 -74310252 + MLT1B LTR MaLR 1 390 0 1618 224 85 69 chr3 143726906 143727858 -74309300 - L1ME2 LINE L1 -91 6073 4990 1335 280 51 24 chr3 143727861 143728468 -74308690 - L1ME4a LINE L1 -193 5928 5304 221 320 152 24 chr3 143729282 143729407 -74307751 - MIR3 SINE MIR 0 208 68 2199 94 0 0 chr3 143729409 143729685 -74307473 + AluSc SINE Alu 8 283 -26 249 33 0 0 chr3 143730825 143730855 -74306303 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 338 16 0 0 chr3 143732035 143732081 -74305077 + AluY SINE Alu 2 41 -261 252 284 22 75 chr3 143732184 143732318 -74304840 + MIR SINE MIR 136 262 0 186 133 0 0 chr3 143732345 143732375 -74304783 + (TG)n Simple_repeat Simple_repeat 2 31 0 27 62 0 0 chr3 143732527 143732575 -74304583 + AT_rich Low_complexity Low_complexity 1 48 0 727 338 82 52 chr3 143733202 143734139 -74303019 - L2 LINE L2 0 3272 2264 360 331 25 8 chr3 143735138 143735259 -74301899 + L2 LINE L2 3150 3272 0 454 274 45 6 chr3 143735644 143735801 -74301357 + L2 LINE L2 2802 2964 -350 337 185 99 12 chr3 143735812 143735893 -74301265 - MLT1H LTR MaLR -460 89 2 17657 18 0 1 chr3 143736294 143739141 -74298017 - L1HS LINE L1 0 6155 3311 464 43 0 0 chr3 143739140 143739210 -74297948 + L1HS LINE L1 3237 3306 -2840 * 846 194 26 11 chr3 143739247 143739438 -74297720 - L1ME2 LINE L1 -1260 4886 4693 259 186 103 52 chr3 143739441 143739538 -74297620 - L1ME2 LINE L1 -1643 4503 4402 2570 131 32 79 chr3 143739584 143739916 -74297242 - L1MB3 LINE L1 -9 6174 5877 2248 119 3 3 chr3 143739916 143740227 -74296931 - AluSx SINE Alu -1 311 1 2570 131 32 79 chr3 143740227 143740453 -74296705 - L1MB3 LINE L1 -306 5877 5642 1385 225 60 24 chr3 143740499 143740792 -74296366 + MLT2B2 LTR ERVL 171 479 -36 668 74 11 0 chr3 143740792 143740887 -74296271 + (TCTA)n Simple_repeat Simple_repeat 3 98 0 1385 225 60 24 chr3 143740887 143740926 -74296232 + MLT2B2 LTR ERVL 479 515 0 454 57 45 11 chr3 143741223 143741311 -74295847 + (TA)n Simple_repeat Simple_repeat 2 92 0 942 277 46 7 chr3 143741311 143741596 -74295562 - MLT1L LTR MaLR -151 464 169 1001 82 0 7 chr3 143741596 143741742 -74295416 + (TTTTC)n Simple_repeat Simple_repeat 4 148 0 1566 199 4 11 chr3 143741752 143742029 -74295129 - AluJo SINE Alu -34 278 4 345 338 128 26 chr3 143742340 143742744 -74294414 + L2 LINE L2 2678 3119 -153 326 343 0 0 chr3 143742806 143742911 -74294247 - MER117 DNA MER1_type -1 196 92 1167 255 68 78 chr3 143744826 143745425 -74291733 + MLT1G1 LTR MaLR 3 595 0 2680 266 61 25 chr3 143746053 143747172 -74289986 + L2 LINE L2 2151 3289 -24 389 360 74 29 chr3 143747367 143747717 -74289441 + L1MEd LINE L1 440 805 -5314 255 298 140 88 chr3 143748370 143748439 -74288719 + MER5A DNA MER1_type 10 74 -115 1584 167 4 15 chr3 143748439 143748709 -74288449 + AluJo SINE Alu 42 308 -4 255 298 140 88 chr3 143748709 143748810 -74288348 + MER5A DNA MER1_type 74 189 0 865 192 169 20 chr3 143748890 143749145 -74288013 - L1MD3 LINE L1 -10 7985 7693 724 168 134 7 chr3 143749152 143749301 -74287857 + MER3 DNA MER1_type 1 168 -41 268 294 101 0 chr3 143749640 143749749 -74287409 + MER94 DNA DNA 2 121 -13 10955 32 1 1 chr3 143749834 143751183 -74285975 - L1P LINE L1 -2063 4083 2735 486 306 21 27 chr3 143753213 143753399 -74283759 + LTR16C LTR ERVL 307 491 0 994 223 179 21 chr3 143753692 143754181 -74282977 - LTR50 LTR ERVL -122 673 25 415 285 53 33 chr3 143754189 143754340 -74282818 + MIR SINE MIR 40 193 -69 1618 205 97 35 chr3 143755040 143755527 -74281631 - MLT2B1 LTR ERVL -3 517 1 429 215 11 11 chr3 143755835 143755928 -74281230 + MIR SINE MIR 51 143 -65 342 311 6 12 chr3 143756209 143756228 -74280930 - L1MA10 LINE L1 0 6334 6316 1156 233 108 12 chr3 143756228 143756572 -74280586 - L1ME2 LINE L1 -9 6155 5779 24 32 0 0 chr3 143757136 143757167 -74279991 + AT_rich Low_complexity Low_complexity 1 31 0 427 297 80 5 chr3 143757403 143757684 -74279474 - MLT1I LTR MaLR -49 360 33 816 257 65 16 chr3 143757933 143758178 -74278980 - MIR SINE MIR 0 262 6 1913 178 25 10 chr3 143758407 143758806 -74278352 - L1PB1 LINE L1 -1129 5017 4613 * 6218 108 19 21 chr3 143758805 143759565 -74277593 + L1PB1 LINE L1 5018 5779 -372 660 87 0 0 chr3 143759565 143759657 -74277501 + (CA)n Simple_repeat Simple_repeat 2 93 0 6218 108 19 21 chr3 143759657 143760030 -74277128 + L1PB1 LINE L1 5779 6151 0 409 195 221 18 chr3 143760409 143760522 -74276636 - MER89 LTR ERV1 -227 332 197 * 488 124 45 45 chr3 143760495 143760584 -74276574 - MER89 LTR ERV1 -470 89 1 1521 205 7 10 chr3 143760608 143760796 -74276362 - AluJo SINE Alu -2 310 122 378 0 0 0 chr3 143760796 143760838 -74276320 + (TTA)n Simple_repeat Simple_repeat 2 43 0 1521 205 7 10 chr3 143760838 143760956 -74276202 - AluJo SINE Alu -190 122 5 307 190 0 0 chr3 143760956 143761010 -74276148 - Alu SINE Alu -248 49 1 563 268 105 7 chr3 143761039 143761192 -74275966 + MER5B DNA MER1_type 8 175 -3 414 333 38 0 chr3 143761648 143761780 -74275378 - L2 LINE L2 -2 3270 3134 1218 204 15 0 chr3 143761854 143762060 -74275098 - MER58A DNA MER1_type -6 218 10 554 348 36 26 chr3 143762711 143763344 -74273814 + L2 LINE L2 2551 3192 -121 1230 216 91 57 chr3 143763643 143764028 -74273130 - MLT1J2 LTR MaLR -26 424 27 219 79 79 0 chr3 143764573 143764611 -74272547 + L2 LINE L2 3226 3266 -6 256 297 0 0 chr3 143765120 143765184 -74271974 + MLT1J LTR MaLR 110 173 -338 2169 195 15 10 chr3 143765249 143765671 -74271487 - MSTB LTR MaLR 0 411 1 278 271 96 48 chr3 143765698 143765864 -74271294 + MLT1L LTR MaLR 408 608 -7 5598 47 3 3 chr3 143766033 143766730 -74270428 - L1P LINE L1 -5447 699 3 230 203 0 51 chr3 143766740 143766799 -74270359 + L2 LINE L2 3167 3222 -91 6868 79 0 36 chr3 143766801 143767532 -74269626 - L1PA13 LINE L1 0 6163 5455 1937 127 52 0 chr3 143767532 143767823 -74269335 - AluSx SINE Alu -6 306 1 6868 79 0 36 chr3 143767823 143768052 -74269106 - L1PA13 LINE L1 -708 5455 5219 592 296 28 5 chr3 143768514 143768730 -74268428 - L1ME LINE L1 -320 5801 5581 2263 52 3 39 chr3 143768914 143769224 -74267934 - AluY SINE Alu -12 299 1 180 238 0 0 chr3 143769445 143769487 -74267671 - L3 LINE CR1 -2 1575 1534 369 323 47 8 chr3 143770284 143770411 -74266747 - MIR3 SINE MIR -40 168 37 1045 187 11 0 chr3 143771034 143771216 -74265942 - MER5A DNA MER1_type 0 189 6 611 258 54 6 chr3 143771217 143771384 -74265774 + MER5B DNA MER1_type 3 177 -1 2186 123 0 3 chr3 143772310 143772612 -74264546 + AluSx SINE Alu 1 301 -11 201 232 18 54 chr3 143772947 143773003 -74264155 + MIR SINE MIR 25 78 -184 2247 153 0 0 chr3 143773358 143773699 -74263459 + MER47A DNA MER2_type 26 366 0 209 297 0 16 chr3 143773852 143773916 -74263242 + L2 LINE L2 3210 3272 0 25 0 0 0 chr3 143774432 143774457 -74262701 + AT_rich Low_complexity Low_complexity 1 25 0 199 338 40 0 chr3 143774521 143774595 -74262563 + MIR SINE MIR 13 89 -173 1026 286 29 0 chr3 143774676 143774949 -74262209 + LTR16A LTR ERVL 170 450 0 235 315 141 47 chr3 143774949 143775098 -74262060 + MIR SINE MIR 85 247 -15 823 151 14 20 chr3 143775504 143775650 -74261508 - MLT1B LTR MaLR -245 145 1 425 200 13 0 chr3 143775801 143775876 -74261282 - MER58 DNA MER1_type 0 2420 2345 1967 159 0 6 chr3 143776198 143776512 -74260646 - AluJb SINE Alu 0 312 1 363 328 94 0 chr3 143776588 143776716 -74260442 - MER20B DNA MER1_type -601 182 43 715 225 55 33 chr3 143777018 143777200 -74259958 - MER3 DNA MER1_type -10 199 14 12546 47 9 2 chr3 143777444 143779018 -74258140 - L1P LINE L1 -3645 2501 916 17935 33 9 0 chr3 143779137 143781299 -74255859 - L1P LINE L1 -964 5182 3001 203 347 0 20 chr3 143781773 143781871 -74255287 + CT-rich Low_complexity Low_complexity 3 98 0 3134 212 92 10 chr3 143782050 143783057 -74254101 + L1ME3 LINE L1 5068 6161 -1 1240 224 19 23 chr3 143783086 143783394 -74253764 + L1ME1 LINE L1 5675 5981 -185 271 336 57 16 chr3 143786468 143786590 -74250568 + L2 LINE L2 2885 3011 -261 1424 142 8 16 chr3 143786593 143786839 -74250319 + MER4A LTR ERV1 1 244 -420 360 40 0 0 chr3 143786841 143786891 -74250267 - AluY SINE Alu 0 301 252 921 231 29 19 chr3 143787159 143787367 -74249791 - MER63A DNA MER1_type 0 210 1 383 227 71 92 chr3 143788038 143788070 -74249088 - MIR3 SINE MIR -1 207 176 923 171 0 75 chr3 143788070 143788257 -74248901 + MER5B DNA MER1_type 2 174 -4 383 227 71 92 chr3 143788257 143788365 -74248793 - MIR3 SINE MIR -32 176 70 342 93 0 37 chr3 143788376 143788430 -74248728 + MER65B LTR ERV1 1 52 -479 1484 145 17 4 chr3 143788430 143788664 -74248494 + AluJo SINE Alu 1 237 -75 231 264 0 58 chr3 143788764 143788851 -74248307 + G-rich Low_complexity Low_complexity 5 86 0 3341 192 25 10 chr3 143789126 143789813 -74247345 - L1 LINE L1 -978 5168 4472 2120 125 138 26 chr3 143790082 143790467 -74246691 - MSTA LTR MaLR 0 428 1 3460 31 9 0 chr3 143790629 143791048 -74246110 - L1P LINE L1 -3429 2717 2295 * 5663 27 3 0 chr3 143791046 143791706 -74245452 + L1P LINE L1 4085 4746 -1400 32 43 0 0 chr3 143792427 143792473 -74244685 + AT_rich Low_complexity Low_complexity 1 46 0 197 293 305 6 chr3 143792475 143792639 -74244519 + MIR SINE MIR 5 217 -45 1267 267 35 0 chr3 143792739 143793050 -74244108 + L2 LINE L2 2155 2476 -838 231 36 0 0 chr3 143794075 143794103 -74243055 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 371 157 329 32 chr3 143794111 143794251 -74242907 + L1ME LINE L1 5441 5624 -540 194 220 17 0 chr3 143794341 143794400 -74242758 + CT-rich Low_complexity Low_complexity 2 61 0 21 36 0 0 chr3 143794987 143795015 -74242143 + AT_rich Low_complexity Low_complexity 1 28 0 1701 174 3 7 chr3 143795282 143795581 -74241577 - AluJb SINE Alu -3 309 12 1295 73 0 0 chr3 143795769 143795933 -74241225 - L1PA6 LINE L1 -33 6121 5958 207 0 0 0 chr3 143795980 143796003 -74241155 + (TAA)n Simple_repeat Simple_repeat 2 24 0 466 291 20 20 chr3 143796286 143796434 -74240724 - L2 LINE L2 -195 3077 2930 415 200 13 0 chr3 143846963 143847038 -74190120 - MER58B DNA MER1_type 0 341 266 1967 159 0 6 chr3 143847359 143847673 -74189485 - AluJb SINE Alu 0 312 1 363 328 94 0 chr3 143847749 143847877 -74189281 - MER20B DNA MER1_type -601 182 43 715 225 55 33 chr3 143848179 143848361 -74188797 - MER3 DNA MER1_type -10 199 14 1677 22 0 0 chr3 143848813 143848995 -74188163 + L1PA3 LINE L1 5974 6155 0 431 332 118 0 chr3 143849472 143849683 -74187475 - MIR SINE MIR -2 260 25 2186 123 0 3 chr3 143850018 143850320 -74186838 - AluSx SINE Alu -11 301 1 611 258 54 6 chr3 143851246 143851413 -74185745 - MER5B DNA MER1_type -1 177 3 1045 187 11 0 chr3 143851414 143851596 -74185562 + MER5A DNA MER1_type 6 189 0 184 376 134 7 chr3 143852177 143852326 -74184832 + L2 LINE L2 3104 3271 -1 271 336 57 16 chr3 143853649 143853771 -74183387 + L2 LINE L2 2885 3011 -261 1648 143 19 66 chr3 143853774 143854018 -74183140 + MER4A LTR ERV1 1 224 -440 2731 26 0 7 chr3 143854018 143854325 -74182833 - AluY SINE Alu -6 305 1 1648 143 19 66 chr3 143854325 143854443 -74182715 + MER4A LTR ERV1 224 346 -318 277 79 11 202 chr3 143854425 143854514 -74182644 + MER4A LTR ERV1 286 357 -307 * 460 142 321 15 chr3 143854574 143854708 -74182450 + MER4C LTR ERV1 291 465 0 1093 202 15 0 chr3 143854817 143855015 -74182143 + MIR SINE MIR 3 203 -59 24 32 0 0 chr3 143855167 143855198 -74181960 + AT_rich Low_complexity Low_complexity 1 31 0 1218 204 15 0 chr3 143855710 143855916 -74181242 + MER58A DNA MER1_type 10 218 -6 414 333 38 0 chr3 143855990 143856122 -74181036 + L2 LINE L2 3134 3270 -2 563 268 105 7 chr3 143856578 143856731 -74180427 - MER5B DNA MER1_type -3 175 8 306 190 0 0 chr3 143856760 143856814 -74180344 + Alu SINE Alu 1 49 -249 1501 200 7 19 chr3 143856814 143856932 -74180226 + AluJo SINE Alu 5 123 -189 351 0 0 0 chr3 143856932 143856971 -74180187 + (TAA)n Simple_repeat Simple_repeat 2 40 0 1501 200 7 19 chr3 143856971 143857162 -74179996 + AluJo SINE Alu 123 310 -2 488 124 45 45 chr3 143857186 143857275 -74179883 + MER89 LTR ERV1 1 89 -470 * 1718 184 86 6 chr3 143857248 143857584 -74179574 + MER89 LTR ERV1 197 559 0 1587 64 0 0 chr3 143859500 143859687 -74177471 - L1PA6 LINE L1 -10 6144 5958 207 0 0 0 chr3 143859734 143859757 -74177401 + (TAA)n Simple_repeat Simple_repeat 2 24 0 466 291 20 20 chr3 143860040 143860188 -74176970 - L2 LINE L2 -195 3077 2930 527 352 81 26 chr3 143860625 143860969 -74176189 - L2 LINE L2 -444 2870 2508 776 179 19 106 chr3 143861356 143861563 -74175595 + MER5A DNA MER1_type 1 189 0 399 326 47 17 chr3 143861564 143861736 -74175422 - MIR SINE MIR -57 205 29 831 231 29 19 chr3 143861934 143862142 -74175016 - MER63A DNA MER1_type 0 210 1 386 227 71 92 chr3 143862813 143862845 -74174313 - MIR3 SINE MIR -1 207 176 844 171 0 75 chr3 143862845 143863032 -74174126 + MER5B DNA MER1_type 2 174 -4 386 227 71 92 chr3 143863032 143863140 -74174018 - MIR3 SINE MIR -32 176 70 2351 127 19 80 chr3 143863151 143863205 -74173953 + MER65A LTR ERV1 1 57 -388 1867 158 14 3 chr3 143863205 143863496 -74173662 + AluJo SINE Alu 1 294 -18 2351 127 19 80 chr3 143863496 143863656 -74173502 + MER65A LTR ERV1 57 225 -220 3097 86 25 16 chr3 143863656 143863699 -74173459 - MLT2A1 LTR ERVL 0 444 403 315 0 0 0 chr3 143863699 143863734 -74173424 + (TG)n Simple_repeat Simple_repeat 2 36 0 3097 86 25 16 chr3 143863734 143864130 -74173028 - MLT2A1 LTR ERVL -41 403 1 2351 127 19 80 chr3 143864130 143864388 -74172770 + MER65A LTR ERV1 225 445 0 265 254 46 81 chr3 143864562 143864735 -74172423 + L2 LINE L2 3072 3238 -75 302 224 0 30 chr3 143864740 143864807 -74172351 - L2 LINE L2 0 3313 3249 272 186 0 0 chr3 143864803 143864846 -74172312 + L2 LINE L2 3215 3257 -15 * 632 159 303 0 chr3 143864917 143865062 -74172096 + MER5A DNA MER1_type 1 189 0 219 36 0 0 chr3 143866026 143866054 -74171104 + (GA)n Simple_repeat Simple_repeat 1 28 0 185 365 24 90 chr3 143866460 143866627 -74170531 + L2 LINE L2 3028 3183 -89 13633 171 29 7 chr3 143866685 143872659 -74164499 - L1PB1 LINE L1 0 6867 620 946 166 31 5 chr3 143872639 143872832 -74164326 - L1PB1 LINE L1 -6663 200 3 * 22 56 0 0 chr3 143873170 143873206 -74163952 + AT_rich Low_complexity Low_complexity 1 36 0 231 305 95 45 chr3 143874268 143874468 -74162690 + L2 LINE L2 1837 2046 -1268 1643 141 17 0 chr3 143874829 143875119 -74162039 + L1MB3 LINE L1 5717 6011 -172 2542 147 13 4 chr3 143875185 143875641 -74161517 - L1MB3 LINE L1 -7 6176 5717 1029 199 59 108 chr3 143875720 143876091 -74161067 + LTR47B LTR ERVL 6 358 -85 508 186 17 0 chr3 143876237 143876355 -74160803 - L1MA7 LINE L1 -10 6281 6162 227 389 40 0 chr3 143877214 143877340 -74159818 + L2 LINE L2 3142 3272 0 266 227 202 25 chr3 143877737 143877856 -74159302 - MIR SINE MIR -17 245 106 323 96 19 0 chr3 143877996 143878048 -74159110 + (TG)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr3 143878072 143878093 -74159065 + AT_rich Low_complexity Low_complexity 1 21 0 2636 197 58 77 chr3 143878127 143878516 -74158642 - L1ME1 LINE L1 -53 6507 6112 2039 203 31 45 chr3 143878516 143879028 -74158130 + MLT1D LTR MaLR 1 505 0 2636 197 58 77 chr3 143879028 143879126 -74158032 - L1ME1 LINE L1 -448 6112 6014 2419 77 0 7 chr3 143879126 143879424 -74157734 - AluY SINE Alu -15 296 1 2636 197 58 77 chr3 143879424 143879830 -74157328 - L1ME1 LINE L1 -546 6014 5631 * 3736 223 52 42 chr3 143879829 143880445 -74156713 - L1ME1 LINE L1 -1263 5277 4668 429 37 0 0 chr3 143880445 143880499 -74156659 - L1PA5 LINE L1 -2 6152 6099 3736 223 52 42 chr3 143880499 143881229 -74155929 - L1ME1 LINE L1 -1872 4668 3918 290 240 0 41 chr3 143881344 143881465 -74155693 - L1ME1 LINE L1 -2630 3910 3795 368 184 0 0 chr3 143881467 143881554 -74155604 - L1ME1 LINE L1 -5158 1382 1296 348 367 50 68 chr3 143881636 143881974 -74155184 - L1ME1 LINE L1 -6192 348 17 462 248 55 71 chr3 143882282 143882536 -74154622 + MLT1K LTR MaLR 329 578 -10 461 148 11 11 chr3 143883084 143883172 -74153986 + MLT1H1 LTR MaLR 468 555 0 455 207 35 0 chr3 143884342 143884458 -74152700 - L1ME4a LINE L1 -21 6100 5981 183 235 0 0 chr3 143884506 143884557 -74152601 + (TA)n Simple_repeat Simple_repeat 2 52 0 195 129 0 0 chr3 143884563 143884594 -74152564 + (TG)n Simple_repeat Simple_repeat 1 31 0 871 141 0 30 chr3 143884900 143885035 -74152123 + AluJo SINE Alu 83 213 -99 461 296 37 21 chr3 143885420 143885609 -74151549 + MIR SINE MIR 33 224 -38 1656 81 4 4 chr3 143885615 143885850 -74151308 + MLT2A1 LTR ERVL 1 235 -209 207 0 0 0 chr3 143885875 143885898 -74151260 + (TA)n Simple_repeat Simple_repeat 1 23 0 260 0 111 0 chr3 143885898 143885934 -74151224 + MLT2A1 LTR ERVL 405 444 0 * 384 123 5 5 chr3 143885934 143885999 -74151159 + MLT2A1 LTR ERVL 392 444 0 1015 198 40 5 chr3 143886360 143886562 -74150596 - MER58A DNA MER1_type -15 209 1 48 32 0 0 chr3 143886645 143886707 -74150451 + AT_rich Low_complexity Low_complexity 1 62 0 1354 102 64 86 chr3 143887985 143888298 -74148860 + L1MA8 LINE L1 5982 6287 -4 2242 117 0 0 chr3 143888395 143888704 -74148454 + AluSx SINE Alu 3 311 -1 576 278 47 11 chr3 143888760 143888951 -74148207 + MIR SINE MIR 65 262 0 1513 144 19 4 chr3 143889492 143889762 -74147396 - L1MA5A LINE L1 -3 6294 6021 980 255 148 21 chr3 143889953 143890384 -74146774 + MLT1L LTR MaLR 126 611 -4 414 186 93 12 chr3 143890393 143890479 -74146679 + L2 LINE L2 3180 3272 0 1303 219 105 7 chr3 143891348 143891733 -74145425 + L1ME3A LINE L1 5721 6067 -103 315 0 0 0 chr3 143891733 143891768 -74145390 + (TC)n Simple_repeat Simple_repeat 2 36 0 261 0 0 0 chr3 143891767 143891796 -74145362 + (TA)n Simple_repeat Simple_repeat 2 30 0 1303 219 105 7 chr3 143891768 143891795 -74145363 + L1ME3A LINE L1 6067 6090 -80 237 65 0 0 chr3 143891795 143891826 -74145332 + (TG)n Simple_repeat Simple_repeat 2 32 0 1303 219 105 7 chr3 143891826 143891850 -74145308 + L1ME3A LINE L1 6090 6170 0 361 292 39 23 chr3 143891924 143892054 -74145104 - MIR SINE MIR -57 151 20 667 241 0 7 chr3 143892249 143892394 -74144764 + MER45A DNA AcHobo 34 177 -1 394 295 18 9 chr3 143892624 143892736 -74144422 - MIR3 SINE MIR 0 208 96 263 329 199 13 chr3 143893580 143893957 -74143201 - L2 LINE L2 -561 2753 2307 317 284 149 28 chr3 143894168 143894309 -74142849 - MIR3 SINE MIR -26 182 25 3823 39 2 2 chr3 143895593 143896056 -74141102 - L1PA3 LINE L1 0 6155 5693 210 298 58 10 chr3 143896103 143896207 -74140951 - MIR SINE MIR -152 110 2 233 256 37 49 chr3 143896396 143896478 -74140680 + MIR SINE MIR 170 250 -12 344 325 75 38 chr3 143896880 143897040 -74140118 - L1MEd LINE L1 -5834 285 120 30 69 0 0 chr3 143897410 143897468 -74139690 + AT_rich Low_complexity Low_complexity 1 58 0 553 55 85 18 chr3 143898867 143899032 -74138126 + (TG)n Simple_repeat Simple_repeat 2 177 0 908 28 39 47 chr3 143899050 143899420 -74137738 + (TG)n Simple_repeat Simple_repeat 1 367 0 1466 199 133 27 chr3 143899812 143900224 -74136934 - LTR16A1 LTR ERVL -1 456 1 745 297 57 18 chr3 143900533 143900665 -74136493 - MER115 DNA AcHobo -6 687 562 369 0 0 0 chr3 143900665 143900706 -74136452 + (TA)n Simple_repeat Simple_repeat 1 41 0 745 297 57 18 chr3 143900706 143900856 -74136302 - MER115 DNA AcHobo -131 562 394 363 187 13 0 chr3 143900864 143900939 -74136219 - MLT1C LTR MaLR -2 465 390 299 191 0 15 chr3 143900940 143901008 -74136150 + MLT1G1 LTR MaLR 523 589 -6 332 291 0 0 chr3 143901029 143901108 -74136050 - MER115 DNA AcHobo -614 79 1 8802 142 27 21 chr3 143901189 143902835 -74134323 + L1MA3 LINE L1 3662 5297 -1008 1925 66 0 0 chr3 143902835 143903063 -74134095 + AluY SINE Alu 35 262 -49 8802 142 27 21 chr3 143903063 143903514 -74133644 + L1MA3 LINE L1 5297 5744 -561 201 39 0 0 chr3 143903514 143903540 -74133618 + (TG)n Simple_repeat Simple_repeat 2 27 0 8802 142 27 21 chr3 143903540 143904053 -74133105 + L1MA3 LINE L1 5744 6299 -6 530 307 23 23 chr3 143904228 143904485 -74132673 + MARNA DNA Mariner 96 352 -234 202 222 19 19 chr3 143904489 143904543 -74132615 + L2 LINE L2 2682 2735 -579 315 311 76 0 chr3 143904690 143904809 -74132349 - MIR SINE MIR -12 250 123 1154 152 121 92 chr3 143904855 143905270 -74131888 - Charlie5 DNA MER1_type 0 2618 2192 513 145 37 10 chr3 143905293 143905407 -74131751 - Charlie5 DNA MER1_type -2490 122 1 234 218 30 129 chr3 143905424 143905455 -74131703 - MIR SINE MIR -93 169 137 1984 85 3 27 chr3 143905455 143905748 -74131410 + L1PA7 LINE L1 5867 6152 -2 234 218 30 129 chr3 143905748 143905817 -74131341 - MIR SINE MIR -125 137 79 276 250 59 0 chr3 143905857 143905925 -74131233 - MIR SINE MIR -144 118 47 181 318 0 0 chr3 143906180 143906224 -74130934 - L2 LINE L2 -78 3194 3151 684 173 17 35 chr3 143906225 143906398 -74130760 - Charlie1 DNA MER1_type 0 2761 2592 1007 125 0 7 chr3 143906399 143906535 -74130623 + AluSq/x SINE Alu 1 135 -177 1682 109 0 4 chr3 143906535 143906764 -74130394 + AluSc SINE Alu 1 228 -81 1283 26 0 0 chr3 143906882 143907038 -74130120 + L1P LINE L1 4827 4982 -1164 910 42 0 0 chr3 143907034 143907153 -74130005 + L1P LINE L1 4679 4797 -1349 * 1106 256 126 7 chr3 143908623 143909029 -74128129 + LTR33A LTR ERVL 70 523 0 450 318 76 21 chr3 143909778 143910067 -74127091 - LTR16A LTR ERVL 0 450 146 1844 156 3 26 chr3 143911321 143911628 -74125530 + AluJb SINE Alu 5 304 -8 501 213 7 29 chr3 143912760 143912896 -74124262 + L1ME1 LINE L1 6029 6161 -5 945 216 10 0 chr3 143913084 143913288 -74123870 - MLT2B1 LTR ERVL -314 206 1 436 215 11 11 chr3 143913596 143913689 -74123469 + MIR SINE MIR 51 143 -65 298 311 6 12 chr3 143913970 143913989 -74123169 - L1MA10 LINE L1 0 6334 6316 1924 228 135 10 chr3 143913989 143914604 -74122554 - L1ME2 LINE L1 -9 6155 5464 231 36 0 0 chr3 143914630 143914658 -74122500 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 1378 108 14 5 chr3 143915613 143915827 -74121331 - L1MA2 LINE L1 0 6304 6089 906 73 7 0 chr3 143915827 143915963 -74121195 + L1MA2 LINE L1 5915 6051 -253 1805 140 0 0 chr3 143915999 143916256 -74120902 + AluSx SINE Alu 40 296 -16 3483 174 29 24 chr3 143916509 143917296 -74119862 - L1MB8 LINE L1 -1 6177 5387 910 48 8 24 chr3 143917312 143917437 -74119721 - L1MA1 LINE L1 0 6302 6180 332 169 62 0 chr3 143917786 143917851 -74119307 - MER5A DNA MER1_type -2 187 119 1083 178 11 5 chr3 143918032 143918217 -74118941 - MER5A DNA MER1_type -3 186 1 2105 143 0 3 chr3 143918504 143918846 -74118312 + MER47A DNA MER2_type 26 366 0 212 297 0 16 chr3 143918999 143919063 -74118095 + L2 LINE L2 3210 3272 0 25 0 0 0 chr3 143919579 143919604 -74117554 + AT_rich Low_complexity Low_complexity 1 25 0 201 351 40 0 chr3 143919668 143919742 -74117416 + MIR SINE MIR 13 89 -173 940 286 29 0 chr3 143919823 143920096 -74117062 + LTR16A LTR ERVL 170 450 0 247 315 141 47 chr3 143920096 143920245 -74116913 + MIR SINE MIR 85 247 -15 1887 78 15 11 chr3 143920666 143920936 -74116222 + L1PA8 LINE L1 5898 6168 -4 751 245 46 34 chr3 143921350 143921587 -74115571 + MLT1J LTR MaLR 23 262 -249 488 272 131 19 chr3 143921723 143921929 -74115229 - MIR SINE MIR -14 248 20 2114 131 0 0 chr3 143921940 143922237 -74114921 - AluSx SINE Alu -15 297 1 886 172 101 0 chr3 143923200 143923369 -74113789 - MER5A DNA MER1_type 0 189 4 3359 164 37 13 chr3 143923416 143923447 -74113711 - L1PA16 LINE L1 -6 6160 6131 1508 112 0 0 chr3 143923447 143923653 -74113505 - AluSg/x SINE Alu -10 300 95 3359 164 37 13 chr3 143923653 143923771 -74113387 - L1PA16 LINE L1 -35 6131 6017 207 0 0 0 chr3 143923771 143923794 -74113364 + (TCCC)n Simple_repeat Simple_repeat 2 24 0 3359 164 37 13 chr3 143923794 143924314 -74112844 - L1PA16 LINE L1 -149 6017 5474 2415 87 36 0 chr3 143924538 143924871 -74112287 - L1PA13 LINE L1 -10 6153 5809 4935 162 30 95 chr3 143924871 143926069 -74111089 - L1PA16 LINE L1 -665 5501 4226 716 169 25 0 chr3 143926069 143926187 -74110971 + FRAM SINE Alu 24 144 -32 621 49 0 0 chr3 143926187 143926268 -74110890 + (GAAA)n Simple_repeat Simple_repeat 4 84 0 4935 162 30 95 chr3 143926268 143926510 -74110648 - L1PA16 LINE L1 -1939 4227 4083 1730 165 0 0 chr3 143926510 143926782 -74110376 - AluSx SINE Alu -6 306 35 4935 162 30 95 chr3 143926782 143926973 -74110185 - L1PA16 LINE L1 -2083 4083 3881 194 324 40 14 chr3 143927059 143927133 -74110025 + L2 LINE L2 3187 3262 -10 1467 213 67 3 chr3 143927141 143927484 -74109674 + MLT1A1 LTR MaLR 1 365 0 279 51 0 0 chr3 143928213 143928252 -74108906 + L1MA2 LINE L1 6256 6294 -10 1129 208 39 41 chr3 143928266 143928390 -74108768 + MLT1A2 LTR MaLR 1 124 -250 2451 55 3 0 chr3 143928390 143928680 -74108478 + AluY SINE Alu 1 291 -20 1129 208 39 41 chr3 143928680 143928902 -74108256 + MLT1A2 LTR MaLR 124 342 -32 342 0 0 0 chr3 143928902 143928940 -74108218 + (TG)n Simple_repeat Simple_repeat 2 39 0 330 26 0 0 chr3 143929221 143929260 -74107898 + (TCTA)n Simple_repeat Simple_repeat 3 41 0 1069 140 0 6 chr3 143929261 143929418 -74107740 - AluJb SINE Alu -22 290 135 395 303 101 13 chr3 143929555 143929783 -74107375 + MIR SINE MIR 15 262 0 571 356 34 25 chr3 143930203 143930866 -74106292 + L2 LINE L2 2521 3192 -121 1086 223 88 55 chr3 143931165 143931550 -74105608 - MLT1J2 LTR MaLR -26 424 27 262 271 206 9 chr3 143931973 143932080 -74105078 + L2 LINE L2 3145 3272 0 221 79 79 0 chr3 143932376 143932414 -74104744 + L2 LINE L2 3226 3266 -6 233 297 0 0 chr3 143932923 143932987 -74104171 + MLT1J LTR MaLR 110 173 -338 2002 195 15 10 chr3 143933052 143933474 -74103684 - MSTB LTR MaLR 0 411 1 501 164 30 103 chr3 143933781 143933946 -74103212 + L1M4 LINE L1 4671 4823 -1323 405 165 0 25 chr3 143934592 143934671 -74102487 + AluS SINE Alu 3 79 -234 5939 30 1 1 chr3 143934798 143935545 -74101613 - L1P LINE L1 -1315 4831 4085 * 13931 31 2 1 chr3 143935543 143937329 -74099829 + L1P LINE L1 2295 4083 -2063 235 294 101 0 chr3 143937410 143937519 -74099639 - MER94 DNA DNA -13 121 2 678 168 134 7 chr3 143937858 143938007 -74099151 - MER3 DNA MER1_type -41 168 1 791 192 169 20 chr3 143938014 143938269 -74098889 + L1MD3 LINE L1 7693 7985 -10 363 269 140 88 chr3 143938349 143938450 -74098708 - MER5A DNA MER1_type 0 189 74 1620 167 4 15 chr3 143938450 143938720 -74098438 - AluJo SINE Alu -4 308 42 363 269 140 88 chr3 143938720 143938789 -74098369 - MER5A DNA MER1_type -115 74 10 386 353 60 46 chr3 143939442 143939895 -74097263 - L1MEd LINE L1 -5314 805 347 225 0 0 0 chr3 143940092 143940117 -74097041 + (T)n Simple_repeat Simple_repeat 1 25 0 499 296 28 5 chr3 143940473 143940689 -74096469 - L1ME LINE L1 -320 5801 5581 2384 52 0 32 chr3 143940873 143941182 -74095976 - AluY SINE Alu -12 299 1 187 238 0 0 chr3 143941403 143941445 -74095713 - L3 LINE CR1 -2 1575 1534 381 323 47 8 chr3 143942242 143942369 -74094789 - MIR3 SINE MIR -40 168 37 723 188 8 0 chr3 143943357 143943485 -74093673 + MER5B DNA MER1_type 2 130 -48 899 137 0 0 chr3 143943501 143943625 -74093533 - FLAM_C SINE Alu -19 124 1 385 319 34 0 chr3 143943696 143943815 -74093343 + L2 LINE L2 3150 3272 0 466 274 45 6 chr3 143944200 143944357 -74092801 + L2 LINE L2 2802 2964 -350 349 183 85 12 chr3 143944368 143944450 -74092708 - MLT1H LTR MaLR -460 89 2 16905 18 0 0 chr3 143944852 143947697 -74089461 - L1HS LINE L1 0 6155 3311 446 43 0 0 chr3 143947696 143947766 -74089392 + L1HS LINE L1 3237 3306 -2840 * 790 194 26 11 chr3 143947803 143947994 -74089164 - L1M4 LINE L1 -1260 4886 4693 238 186 103 52 chr3 143947997 143948094 -74089064 - L1M4 LINE L1 -1643 4503 4402 2571 131 32 77 chr3 143948140 143948472 -74088686 - L1MB3 LINE L1 -9 6174 5876 2285 119 3 3 chr3 143948472 143948783 -74088375 - AluSx SINE Alu -1 311 1 2571 131 32 77 chr3 143948783 143949008 -74088150 - L1MB3 LINE L1 -307 5876 5642 1274 239 60 9 chr3 143949056 143949347 -74087811 + MLT2B2 LTR ERVL 168 479 -36 668 74 11 0 chr3 143949347 143949442 -74087716 + (TCTA)n Simple_repeat Simple_repeat 3 98 0 1274 239 60 9 chr3 143949442 143949481 -74087677 + MLT2B2 LTR ERVL 479 515 0 454 57 45 11 chr3 143949778 143949866 -74087292 + (TA)n Simple_repeat Simple_repeat 1 91 0 845 277 46 7 chr3 143949866 143950151 -74087007 - MLT1L LTR MaLR -151 464 169 1001 82 0 7 chr3 143950151 143950297 -74086861 + (TTTTC)n Simple_repeat Simple_repeat 4 148 0 1581 200 4 11 chr3 143950307 143950587 -74086571 - AluJo SINE Alu -34 278 1 356 338 128 26 chr3 143950895 143951299 -74085859 + L2 LINE L2 2678 3119 -153 295 343 0 0 chr3 143951361 143951466 -74085692 - MER117 DNA MER1_type -1 196 92 1166 145 45 0 chr3 143952176 143952376 -74084782 - MER3 DNA MER1_type 0 209 1 21 0 0 0 chr3 143953068 143953089 -74084069 + AT_rich Low_complexity Low_complexity 1 21 0 254 292 84 22 chr3 143953359 143953484 -74083674 + MIR SINE MIR 18 145 -63 947 207 16 69 chr3 143953578 143953882 -74083276 - L1ME2 LINE L1 -2 6162 5875 251 280 91 61 chr3 143954003 143954172 -74082986 + MIR SINE MIR 23 207 -55 432 302 111 12 chr3 143954379 143954551 -74082607 - MIR SINE MIR -56 206 18 2725 266 61 25 chr3 143954807 143955926 -74081232 - L2 LINE L2 -24 3289 2151 1162 255 68 78 chr3 143956554 143957153 -74080005 - MLT1G1 LTR MaLR 0 595 3 206 154 0 26 chr3 143958516 143958555 -74078603 + A-rich Low_complexity Low_complexity 5 42 0 519 305 32 58 chr3 143958758 143959066 -74078092 + MLT1I LTR MaLR 91 390 -19 1337 268 30 13 chr3 143961574 143961969 -74075189 - LTR16B LTR ERVL -16 448 47 3328 130 9 6 chr3 143962066 143962595 -74074563 + L1PA16 LINE L1 5636 6166 0 21 0 0 0 chr3 143962738 143962759 -74074399 + AT_rich Low_complexity Low_complexity 1 21 0 602 167 0 0 chr3 143962921 143963023 -74074135 - AluSp/q SINE Alu -2 311 210 3517 53 22 0 chr3 143963024 143963475 -74073683 + L1PA6 LINE L1 5692 6152 -2 321 254 43 87 chr3 143963475 143963660 -74073498 + L1ME3A LINE L1 5967 6143 -27 453 325 43 32 chr3 143963898 143964086 -74073072 - MIR SINE MIR -50 212 23 2018 111 64 0 chr3 143964360 143964640 -74072518 + AluSx SINE Alu 8 305 -7 260 196 0 0 chr3 143964749 143964805 -74072353 - L1MA10 LINE L1 -1 6333 6278 1496 93 28 0 chr3 143965104 143965318 -74071840 + L1PA10 LINE L1 5945 6164 -4 296 218 127 18 chr3 143965384 143965494 -74071664 - L1ME4a LINE L1 -198 5923 5802 1804 83 91 8 chr3 143965616 143965870 -74071288 - AluY SINE Alu -2 309 35 27 0 0 0 chr3 143966045 143966072 -74071086 + AT_rich Low_complexity Low_complexity 1 27 0 197 176 10 29 chr3 143967711 143967813 -74069345 + (TA)n Simple_repeat Simple_repeat 1 100 0 2190 121 50 19 chr3 143967895 143968259 -74068899 + THE1C LTR MaLR 1 375 0 236 189 31 24 chr3 143968279 143968406 -74068752 + (TA)n Simple_repeat Simple_repeat 2 129 0 9415 175 34 4 chr3 143969923 143971709 -74065449 + L1M1 LINE L1 23 1862 -5703 1357 99 99 0 chr3 143971719 143971942 -74065216 + L1MA1 LINE L1 6058 6302 0 22 0 0 0 chr3 143971974 143971996 -74065162 + AT_rich Low_complexity Low_complexity 1 22 0 1252 138 110 8 chr3 143972927 143973173 -74063985 + MSTA LTR MaLR 1 271 -157 486 334 119 26 chr3 143973224 143973526 -74063632 - L2 LINE L2 -556 2758 2429 2129 112 0 7 chr3 143974184 143974490 -74062668 - AluY SINE Alu 0 311 1 270 257 27 0 chr3 143974533 143974607 -74062551 - MIR3 SINE MIR -8 200 125 5099 201 57 36 chr3 143974617 143975934 -74061224 - MER45R DNA AcHobo -125 1456 112 2355 52 0 3 chr3 143975937 143976277 -74060881 + AluY SINE Alu 1 339 0 5963 106 21 21 chr3 143978443 143978815 -74058343 - L1PB1 LINE L1 -1 6150 5779 660 87 0 0 chr3 143978815 143978907 -74058251 + (TG)n Simple_repeat Simple_repeat 2 93 0 5963 106 21 21 chr3 143978907 143979666 -74057492 - L1PB1 LINE L1 -372 5779 5018 1828 178 25 8 chr3 143979665 143980063 -74057095 + L1PB1 LINE L1 4613 5017 -1129 * 805 257 65 16 chr3 143980292 143980537 -74056621 + MIR SINE MIR 6 262 0 395 297 80 5 chr3 143980786 143981067 -74056091 + MLT1I LTR MaLR 33 360 -49 24 32 0 0 chr3 143981303 143981334 -74055824 + AT_rich Low_complexity Low_complexity 1 31 0 183 379 50 21 chr3 143981759 143981899 -74055259 + L2 LINE L2 2500 2643 -671 1794 166 10 63 chr3 143982150 143982560 -74054598 - MLT1B LTR MaLR 0 390 3 1092 241 26 20 chr3 143982736 143983081 -74054077 - L1MCb LINE L1 -5698 347 1 1572 111 0 5 chr3 143983117 143983334 -74053824 + AluSq SINE Alu 84 299 -14 332 196 33 43 chr3 143983509 143983601 -74053557 - MLT1H LTR MaLR -2 547 457 384 289 31 92 chr3 143983992 143984252 -74052906 - L1MC4a LINE L1 -1882 5926 5683 312 27 0 0 chr3 143984260 143984297 -74052861 + (TG)n Simple_repeat Simple_repeat 1 37 0 331 98 20 0 chr3 143984337 143984388 -74052770 - MER20 DNA MER1_type -47 172 121 5200 127 22 7 chr3 143984389 143985314 -74051844 + L1PB2 LINE L1 5201 6139 -12 305 286 65 30 chr3 143985641 143985809 -74051349 - L1MEd LINE L1 -4872 1247 1074 829 190 62 41 chr3 143985905 143986147 -74051011 - L1ME3 LINE L1 -68 6094 5848 230 237 72 59 chr3 143986140 143986461 -74050697 - L1MEd LINE L1 -5022 1097 773 * 549 204 91 54 chr3 143986606 143986792 -74050366 - MLT1J2 LTR MaLR -231 219 27 7450 32 1 0 chr3 143986944 143988166 -74048992 + L1PA4 LINE L1 4964 6186 0 3819 194 159 17 chr3 143988290 143989406 -74047752 - L1MCa LINE L1 -4321 2243 969 1717 296 20 17 chr3 143989484 143990129 -74047029 - L1MCa LINE L1 -5113 932 286 1083 132 0 0 chr3 143990265 143990417 -74046741 + AluSg/x SINE Alu 154 305 -7 7280 36 0 0 chr3 143990597 143991902 -74045256 - L1PA4 LINE L1 0 6155 4858 2138 152 55 65 chr3 143992174 143992317 -74044841 - Charlie1 DNA MER1_type -18 2743 2600 2144 115 13 10 chr3 143992317 143992621 -74044537 + AluSx SINE Alu 1 305 -7 2138 152 55 65 chr3 143992621 143992894 -74044264 - Charlie1 DNA MER1_type -161 2600 2332 1012 65 7 7 chr3 143992894 143993033 -74044125 + MER85 DNA T2_type 1 139 0 2138 152 55 65 chr3 143993033 143993202 -74043956 - Charlie1 DNA MER1_type -429 2332 2163 1212 81 0 0 chr3 143993218 143993367 -74043791 - AluSg/x SINE Alu -26 286 138 612 127 76 0 chr3 143993374 143993492 -74043666 - Charlie1 DNA MER1_type -591 2170 2044 8801 31 8 0 chr3 144043519 144044572 -73992586 + L1P LINE L1 4025 5085 -1061 372 88 0 0 chr3 144044790 144044847 -73992311 + (TG)n Simple_repeat Simple_repeat 2 58 0 184 346 64 0 chr3 144045045 144045123 -73992035 + L2 LINE L2 3168 3250 -22 763 205 55 45 chr3 144045133 144045213 -73991945 - L1MC4 LINE L1 0 8042 7964 2239 151 29 16 chr3 144045213 144045598 -73991560 - MLT1B LTR MaLR 0 390 1 763 205 55 45 chr3 144045598 144045879 -73991279 - L1MC4 LINE L1 -78 7964 5161 1059 183 68 159 chr3 144048320 144048747 -73988411 - MSTD LTR MaLR -8 388 1 336 266 49 120 chr3 144048747 144049156 -73988002 - L2 LINE L2 -249 3064 2684 1331 152 9 5 chr3 144049949 144050173 -73986985 - Tigger2a DNA MER2_type 0 434 210 4360 102 12 9 chr3 144050173 144050842 -73986316 + L1MA1 LINE L1 5628 6298 -4 23 0 0 0 chr3 144050846 144050869 -73986289 + AT_rich Low_complexity Low_complexity 1 23 0 1331 157 0 43 chr3 144050869 144051104 -73986054 - Tigger2a DNA MER2_type -209 225 1 260 203 13 89 chr3 144051119 144051198 -73985960 - L1MC4a LINE L1 -1882 5926 5854 351 250 57 52 chr3 144051467 144051679 -73985479 + LTR16A1 LTR ERVL 198 481 -10 742 298 88 49 chr3 144051917 144052197 -73984961 + L2 LINE L2 2824 3131 -182 721 213 56 30 chr3 144052197 144052394 -73984764 - MER105 DNA DNA -2 202 1 742 298 88 49 chr3 144052394 144052580 -73984578 + L2 LINE L2 3131 3308 -5 1175 153 48 19 chr3 144056788 144056997 -73980161 - MER20 DNA MER1_type -4 215 1 768 211 133 0 chr3 144058197 144058363 -73978795 + MER5A DNA MER1_type 2 189 0 1140 144 45 5 chr3 144058530 144058731 -73978427 - MER3 DNA MER1_type 0 209 1 338 306 23 46 chr3 144059495 144059711 -73977447 - L1MC4a LINE L1 -1904 5904 5694 2439 158 48 10 chr3 144059716 144060128 -73977030 - MSTA LTR MaLR 0 428 1 428 68 0 55 chr3 144060128 144060201 -73976957 - MSTA-int LTR MaLR 0 1580 1512 1613 117 22 9 chr3 144060201 144060431 -73976727 - THE1A LTR MaLR -97 258 26 4797 149 18 50 chr3 144060431 144060667 -73976491 - MSTA-int LTR MaLR -82 1569 1327 2065 90 61 4 chr3 144060667 144060945 -73976213 - AluSg SINE Alu -13 297 4 4797 149 18 50 chr3 144060945 144061579 -73975579 - MSTA-int LTR MaLR -324 1327 727 2735 93 11 11 chr3 144061582 144061936 -73975222 + THE1A LTR MaLR 1 354 -1 11193 91 4 65 chr3 144061940 144063621 -73973537 + THE1A-int LTR MaLR 3 1580 0 2911 85 8 0 chr3 144063621 144063973 -73973185 + THE1A LTR MaLR 1 355 0 3876 177 35 14 chr3 144063975 144064148 -73973010 - MSTA-int LTR MaLR -925 726 558 2309 104 0 0 chr3 144064148 144064455 -73972703 - AluY SINE Alu -4 307 1 3876 177 35 14 chr3 144064455 144064992 -73972166 - MSTA-int LTR MaLR -1093 558 1 2403 136 57 7 chr3 144064992 144065397 -73971761 - MSTA LTR MaLR 0 428 4 540 286 100 35 chr3 144065397 144065589 -73971569 - L1MC4a LINE L1 -473 5648 5471 2134 79 47 0 chr3 144065589 144065866 -73971292 - AluY SINE Alu -21 290 1 540 286 100 35 chr3 144065866 144065938 -73971220 - L1MC4a LINE L1 -650 5471 5405 910 201 11 17 chr3 144066083 144066262 -73970896 + MER5B DNA MER1_type 1 178 0 26 0 0 0 chr3 144066981 144067007 -73970151 + AT_rich Low_complexity Low_complexity 1 26 0 717 253 40 27 chr3 144067242 144067467 -73969691 - L1ME1 LINE L1 -5 6161 5934 301 257 44 110 chr3 144067713 144067985 -73969173 + L1ME3A LINE L1 5811 6064 -106 24 0 0 0 chr3 144069038 144069062 -73968096 + AT_rich Low_complexity Low_complexity 1 24 0 273 119 0 0 chr3 144069394 144069436 -73967722 + (TG)n Simple_repeat Simple_repeat 1 42 0 2112 265 237 13 chr3 144070935 144071947 -73965211 + L2 LINE L2 1 1239 -2075 251 183 217 0 chr3 144071964 144072024 -73965134 + L2 LINE L2 1770 1842 -1472 327 316 60 8 chr3 144072959 144073092 -73964066 + MIR3 SINE MIR 69 208 0 24 0 0 0 chr3 144073113 144073137 -73964021 + AT_rich Low_complexity Low_complexity 1 24 0 449 249 61 55 chr3 144073208 144073373 -73963785 - MIR3 SINE MIR -6 202 37 590 163 14 64 chr3 144073747 144073888 -73963270 + Charlie4 DNA MER1_type 1825 1958 -3 385 258 41 0 chr3 144075079 144075176 -73961982 + MER5A DNA MER1_type 9 109 -80 1126 175 96 42 chr3 144075262 144075502 -73961656 + AluJo SINE Alu 37 289 -23 2502 75 0 3 chr3 144075516 144075822 -73961336 - AluY SINE Alu -6 305 1 364 252 97 0 chr3 144075824 144075927 -73961231 - MIR SINE MIR -74 188 76 721 259 40 72 chr3 144076013 144076361 -73960797 + MLT1J1 LTR MaLR 69 405 -41 6147 174 33 23 chr3 144077534 144079306 -73957852 - L1MC1 LINE L1 -13 6320 4534 2152 109 0 39 chr3 144080304 144080615 -73956543 + AluSg SINE Alu 1 299 -11 691 130 43 80 chr3 144080651 144080813 -73956345 - MER3 DNA MER1_type 0 2584 2429 1475 130 14 0 chr3 144080813 144081020 -73956138 + MER2 DNA MER2_type 1 210 -135 23 54 0 0 chr3 144081021 144081058 -73956100 + AT_rich Low_complexity Low_complexity 1 37 0 1110 132 45 66 chr3 144081102 144081344 -73955814 - MER3 DNA MER1_type 0 2471 2235 620 183 16 40 chr3 144081353 144081479 -73955679 - MER3 DNA MER1_type -87 122 47 350 254 79 56 chr3 144082671 144082797 -73954361 + MIR3 SINE MIR 49 177 -31 294 242 132 0 chr3 144082813 144082904 -73954254 - MIR3 SINE MIR -44 164 62 1851 148 7 7 chr3 144083182 144083460 -73953698 + AluSx SINE Alu 1 278 -34 443 268 177 0 chr3 144083790 144083954 -73953204 - MIR SINE MIR -13 249 57 26 30 0 0 chr3 144084311 144084344 -73952814 + AT_rich Low_complexity Low_complexity 1 33 0 430 295 72 57 chr3 144085232 144085425 -73951733 + L2 LINE L2 3075 3270 -2 822 251 50 0 chr3 144085897 144086076 -73951082 - MER5A DNA MER1_type 0 189 2 27 0 0 0 chr3 144086112 144086139 -73951019 + AT_rich Low_complexity Low_complexity 1 27 0 1851 152 17 20 chr3 144086862 144087159 -73949999 - AluJo SINE Alu -16 296 1 260 313 44 70 chr3 144087482 144087578 -73949580 - MER102b DNA MER1_type -1088 340 243 2223 100 0 3 chr3 144087578 144087868 -73949290 + AluSx SINE Alu 17 305 -7 260 313 44 70 chr3 144087868 144087998 -73949160 - MER102b DNA MER1_type -1185 243 120 183 42 0 0 chr3 144088006 144088030 -73949128 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 32422 44 2 1 chr3 144088134 144092052 -73945106 - L1P LINE L1 -2227 3919 1 3937 148 16 25 chr3 144092170 144092854 -73944304 - L1MA8 LINE L1 0 6291 5614 993 257 22 10 chr3 144093157 144093480 -73943678 + L1ME2 LINE L1 5581 5909 -255 275 296 123 25 chr3 144094159 144094321 -73942837 - MER5B DNA MER1_type 0 178 1 937 36 0 18 chr3 144094671 144094783 -73942375 - L1PA10 LINE L1 -5 6163 6054 317 331 99 49 chr3 144096423 144096524 -73940634 - L2 LINE L2 -185 3087 2992 1668 172 82 34 chr3 144096524 144096879 -73940279 + MLT1A2 LTR MaLR 1 372 -2 317 331 99 49 chr3 144096879 144097040 -73940118 - L2 LINE L2 -280 2992 2812 276 232 145 0 chr3 144097048 144097117 -73940041 - MER117 DNA MER1_type -5 192 114 336 263 58 139 chr3 144097126 144097285 -73939873 + MIR SINE MIR 11 181 -81 1626 156 114 19 chr3 144097285 144097593 -73939565 - MER44D DNA MER2_type -1 608 2 336 263 58 139 chr3 144097593 144097613 -73939545 + MIR SINE MIR 181 201 -61 1862 159 3 7 chr3 144097613 144097909 -73939249 - AluSx SINE Alu -11 301 7 336 263 58 139 chr3 144097909 144098002 -73939156 + MIR SINE MIR 201 262 0 589 226 148 26 chr3 144099135 144099290 -73937868 + MER5A DNA MER1_type 10 183 -6 2187 86 4 4 chr3 144101401 144101716 -73935442 - AluSg SINE Alu 0 315 1 673 245 106 95 chr3 144103639 144103711 -73933447 - MLT1J LTR MaLR -71 440 370 1269 288 48 21 chr3 144103711 144104148 -73933010 - LTR16A LTR ERVL -1 449 1 673 245 106 95 chr3 144104148 144104508 -73932650 - MLT1J LTR MaLR -141 370 3 739 139 14 148 chr3 144104978 144105037 -73932121 + MER53 DNA DNA 3 68 -121 1617 182 7 7 chr3 144105037 144105328 -73931830 - AluJo SINE Alu -16 296 6 739 139 14 148 chr3 144105328 144105484 -73931674 + MER53 DNA DNA 68 189 0 2286 104 3 0 chr3 144105823 144106121 -73931037 - AluSx SINE Alu -13 299 1 240 368 77 0 chr3 144106922 144107039 -73930119 + L2 LINE L2 3146 3271 -1 200 200 0 0 chr3 144107040 144107075 -73930083 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 225 367 92 0 chr3 144107361 144107481 -73929677 - L2 LINE L2 -203 3069 2939 451 137 126 0 chr3 144108164 144108259 -73928899 - L1MB4 LINE L1 0 6180 6074 264 245 40 26 chr3 144108262 144108373 -73928785 - MIR SINE MIR -61 147 34 312 237 170 30 chr3 144108377 144108512 -73928646 - MIR3 SINE MIR -54 154 1 313 140 0 0 chr3 144108874 144108924 -73928234 + L2 LINE L2 3263 3312 -1 1779 197 12 0 chr3 144108967 144109307 -73927851 - L1ME1 LINE L1 -8 6158 5815 1797 210 26 6 chr3 144109338 144109681 -73927477 + MER6A DNA MER2_type 32 381 -224 975 82 15 0 chr3 144109681 144109815 -73927343 - AluY SINE Alu -1 310 175 1294 118 10 5 chr3 144109815 144110018 -73927140 + MER6A DNA MER2_type 373 576 -29 334 219 50 47 chr3 144111074 144111272 -73925886 + L1ME3 LINE L1 5948 6157 -13 345 62 0 0 chr3 144111308 144111356 -73925802 + (CA)n Simple_repeat Simple_repeat 2 49 0 2012 258 82 2 chr3 144112270 144112816 -73924342 - MLT1G1 LTR MaLR -5 590 1 195 42 0 0 chr3 144112852 144112876 -73924282 + (TG)n Simple_repeat Simple_repeat 1 24 0 2249 92 0 10 chr3 144113563 144113893 -73923265 + AluY SINE Alu 1 311 0 413 287 42 59 chr3 144114394 144114631 -73922527 - L2 LINE L2 -3 3310 3078 195 139 0 0 chr3 144114719 144114755 -73922403 + (TAA)n Simple_repeat Simple_repeat 2 37 0 266 256 0 37 chr3 144114755 144114837 -73922321 - MIR SINE MIR 0 262 184 3600 107 47 11 chr3 144116041 144116612 -73920546 - L1PA13 LINE L1 -5 6158 5567 906 202 75 4 chr3 144116782 144117010 -73920148 - MER58 DNA MER1_type -2145 275 32 1185 241 63 17 chr3 144119102 144119451 -73917707 - L1ME3A LINE L1 -251 5919 5555 23 0 0 0 chr3 144119821 144119844 -73917314 + AT_rich Low_complexity Low_complexity 1 23 0 1044 193 64 124 chr3 144120542 144120930 -73916228 + MLT1A1 LTR MaLR 1 365 0 181 164 0 49 chr3 144121007 144121068 -73916090 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 26 0 0 0 chr3 144121409 144121435 -73915723 + AT_rich Low_complexity Low_complexity 1 26 0 7351 18 6 0 chr3 144121435 144122327 -73914831 - L1PA3 LINE L1 0 6155 5259 1261 220 47 53 chr3 144122427 144122709 -73914449 - L1ME3A LINE L1 -1701 4445 4166 189 94 0 0 chr3 144122709 144122741 -73914417 + (TTTAA)n Simple_repeat Simple_repeat 4 35 0 1261 220 47 53 chr3 144122741 144122908 -73914250 - L1ME3A LINE L1 -1980 4166 3999 318 316 67 6 chr3 144122969 144123138 -73914020 - MER20B DNA MER1_type -5 214 34 361 345 85 6 chr3 144126569 144126734 -73910424 + MIR SINE MIR 7 184 -78 405 0 0 0 chr3 144127674 144127719 -73909439 + (TA)n Simple_repeat Simple_repeat 2 46 0 205 288 63 54 chr3 144128994 144129105 -73908053 + L2 LINE L2 3137 3248 -24 1473 181 38 26 chr3 144129147 144129489 -73907669 - MLT1A1 LTR MaLR -10 355 10 226 330 140 35 chr3 144130328 144130528 -73906630 - L2 LINE L2 -38 3234 3014 248 282 0 39 chr3 144130537 144130615 -73906543 - MIR SINE MIR -90 118 44 487 208 20 0 chr3 144130754 144130855 -73906303 + MLT1A1 LTR MaLR 12 114 -251 499 258 72 14 chr3 144130928 144131137 -73906021 + L1ME LINE L1 5559 5779 -342 2370 67 3 10 chr3 144131445 144131745 -73905413 - AluY SINE Alu -13 298 1 29 47 0 0 chr3 144133066 144133109 -73904049 + AT_rich Low_complexity Low_complexity 1 43 0 1851 153 30 14 chr3 144133270 144133637 -73903521 - L1MB7 LINE L1 0 6184 5812 5262 120 42 20 chr3 144133637 144134121 -73903037 - L1MA8 LINE L1 -3 6288 5816 243 0 0 0 chr3 144134121 144134148 -73903010 + (TC)n Simple_repeat Simple_repeat 2 28 0 225 0 0 0 chr3 144134147 144134172 -73902986 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 5262 120 42 20 chr3 144134148 144134653 -73902505 - L1MA8 LINE L1 -475 5816 5301 1312 171 143 34 chr3 144134948 144135126 -73902032 - MER47A DNA MER2_type -1957 366 209 2387 90 3 0 chr3 144135126 144135425 -73901733 - AluSx SINE Alu -12 300 1 1312 171 143 34 chr3 144135425 144135574 -73901584 - MER47A DNA MER2_type -2114 209 3 318 344 77 7 chr3 144135856 144136114 -73901044 - L1MB7 LINE L1 -508 5658 5383 491 110 4 4 chr3 144136250 144136366 -73900792 - L1M2 LINE L1 -776 5524 5414 289 163 88 12 chr3 144136777 144136857 -73900301 + L1MA10 LINE L1 6248 6333 -1 201 356 161 0 chr3 144136973 144137091 -73900067 - MIR3 SINE MIR -58 150 14 236 280 0 0 chr3 144138775 144138825 -73898333 + (TG)n Simple_repeat Simple_repeat 2 51 0 1685 199 31 8 chr3 144139990 144140347 -73896811 - MLT1A1 LTR MaLR 0 365 1 219 298 36 36 chr3 144141126 144141210 -73895948 + L2 LINE L2 2987 3070 -202 250 309 12 12 chr3 144141623 144141707 -73895451 + MIR SINE MIR 73 156 -106 1599 208 34 14 chr3 144141809 144142165 -73894993 - MLT1A2 LTR MaLR -11 363 1 394 294 90 10 chr3 144142318 144142519 -73894639 - LTR16B LTR ERVL -2 462 246 251 261 269 8 chr3 144142794 144142913 -73894245 - L2 LINE L2 -7 3265 3116 402 270 133 66 chr3 144143100 144143127 -73894031 - MIR SINE MIR 0 262 238 518 250 8 0 chr3 144143127 144143255 -73893903 - MER94 DNA DNA -1 133 5 402 270 133 66 chr3 144143255 144143280 -73893878 - MIR SINE MIR -24 238 216 1800 186 6 6 chr3 144143280 144143591 -73893567 - AluJo SINE Alu -1 311 1 402 270 133 66 chr3 144143591 144143778 -73893380 - MIR SINE MIR -46 216 6 187 232 145 0 chr3 144143928 144143997 -73893161 + L2 LINE L2 3235 3313 0 210 347 105 0 chr3 144145401 144145496 -73891662 - MIR3 SINE MIR -46 162 58 542 254 104 21 chr3 144146045 144146285 -73890873 - L1MC4 LINE L1 -925 7117 6858 189 262 82 66 chr3 144147180 144147241 -73889917 - L2 LINE L2 -64 3208 3147 2403 139 65 2 chr3 144149413 144149816 -73887342 - MSTA LTR MaLR 0 428 1 23 0 0 0 chr3 144149936 144149959 -73887199 + AT_rich Low_complexity Low_complexity 1 23 0 331 268 108 5 chr3 144151214 144151408 -73885750 - L1ME4a LINE L1 -84 6037 5824 417 306 139 12 chr3 144151413 144151815 -73885343 - L1ME4a LINE L1 -416 5705 5349 1078 265 127 19 chr3 144152651 144153122 -73884036 - MLT1G1 LTR MaLR 0 595 74 575 156 12 55 chr3 144153682 144153704 -73883454 - L1MA8 LINE L1 -220 5945 5924 13572 106 90 26 chr3 144153704 144155978 -73881180 + Tigger1 DNA MER2_type 1 2418 0 575 156 12 55 chr3 144155978 144156093 -73881065 - L1MA8 LINE L1 -241 5924 5814 836 113 0 0 chr3 144156095 144156210 -73880948 - AluY SINE Alu -3 308 194 2100 75 4 0 chr3 144156210 144156475 -73880683 - AluY SINE Alu -45 266 1 477 295 185 12 chr3 144156525 144156850 -73880308 - L1M4 LINE L1 -3256 3701 3321 451 206 0 22 chr3 144156862 144156954 -73880204 + MER21B LTR ERV1 1 90 -773 28 0 0 0 chr3 144157000 144157028 -73880130 + AT_rich Low_complexity Low_complexity 1 28 0 1258 139 5 23 chr3 144157040 144157255 -73879903 - L1PB3 LINE L1 -3 6151 5941 1529 105 26 18 chr3 144160802 144161030 -73876128 - MER30 DNA MER1_type 0 230 1 4254 45 17 6 chr3 144161181 144161712 -73875446 - L1PA7 LINE L1 0 6154 5618 439 99 0 0 chr3 144161713 144161784 -73875374 + L1P LINE L1 5235 5305 -841 390 257 31 172 chr3 144162030 144162349 -73874809 - L1M4 LINE L1 -5658 1201 688 559 290 43 13 chr3 144162378 144162609 -73874549 - L1M4 LINE L1 -6611 248 11 38 51 0 0 chr3 144163250 144163309 -73873849 + AT_rich Low_complexity Low_complexity 1 59 0 1032 203 18 53 chr3 144164332 144164559 -73872599 - MER20 DNA MER1_type 0 219 1 838 231 60 28 chr3 144165185 144165436 -73871722 - MIR SINE MIR 0 262 4 273 173 39 0 chr3 144166005 144166057 -73871101 - MIR SINE MIR -119 143 90 591 53 0 0 chr3 144166334 144166409 -73870749 + (TTTTA)n Simple_repeat Simple_repeat 1 75 0 17630 80 6 1 chr3 144166409 144169772 -73867386 - L1PA7 LINE L1 -24 6130 2752 1598 89 0 0 chr3 144169775 144170012 -73867146 - L1P4 LINE L1 -638 5527 5291 253 256 81 12 chr3 144170024 144170110 -73867048 + MIR SINE MIR 94 185 -77 340 227 0 20 chr3 144170232 144170333 -73866825 + L1MC3 LINE L1 6517 6601 -1184 1288 205 118 52 chr3 144170376 144170757 -73866401 + L1MD3 LINE L1 6547 6952 -1043 23 0 0 0 chr3 144170867 144170890 -73866268 + AT_rich Low_complexity Low_complexity 1 23 0 2029 147 3 6 chr3 144171126 144171439 -73865719 + AluJb SINE Alu 1 312 0 2624 149 49 4 chr3 144171627 144172136 -73865022 - L1MA9 LINE L1 -5 6307 5776 268 287 22 15 chr3 144172136 144172272 -73864886 + (CATATA)n Simple_repeat Simple_repeat 6 142 0 2910 140 9 36 chr3 144172283 144172978 -73864180 - L1MA9 LINE L1 -538 5774 5097 474 300 142 65 chr3 144173420 144173757 -73863401 + L2 LINE L2 2909 3271 -1 220 265 0 0 chr3 144175656 144175705 -73861453 + MIR3 SINE MIR 150 198 -10 732 164 101 13 chr3 144175763 144175922 -73861236 - MIR SINE MIR 0 262 90 24 0 0 0 chr3 144176539 144176563 -73860595 + AT_rich Low_complexity Low_complexity 1 24 0 342 280 78 31 chr3 144176717 144176910 -73860248 - L1ME4a LINE L1 -202 5919 5718 2333 103 0 3 chr3 144177125 144177425 -73859733 - AluSx SINE Alu -13 299 1 285 347 52 46 chr3 144177577 144177750 -73859408 + MIR3 SINE MIR 26 199 -9 264 315 95 0 chr3 144178464 144178569 -73858589 + MIR SINE MIR 57 170 -38 239 231 19 0 chr3 144179070 144179122 -73858036 + (TGAG)n Simple_repeat Simple_repeat 1 53 0 3391 135 6 17 chr3 144179495 144180030 -73857128 - MER1A DNA MER1_type 0 529 1 1814 172 10 7 chr3 144180293 144180589 -73856569 - AluJo SINE Alu -13 299 3 2591 101 0 0 chr3 144182207 144182562 -73854596 - THE1A LTR MaLR 0 355 1 11855 85 14 2 chr3 144182562 144184123 -73853035 - THE1A-int LTR MaLR 0 1580 2 2416 92 47 0 chr3 144184125 144184463 -73852695 - THE1A LTR MaLR -1 354 1 1698 177 0 17 chr3 144184464 144184752 -73852406 + AluJb SINE Alu 14 296 -16 369 250 51 38 chr3 144185155 144185391 -73851767 - L1ME LINE L1 -318 5803 5565 21 0 0 0 chr3 144185748 144185769 -73851389 + AT_rich Low_complexity Low_complexity 1 21 0 267 344 57 8 chr3 144186660 144186782 -73850376 + L2 LINE L2 3167 3294 -19 5312 84 13 0 chr3 144186959 144187731 -73849427 + L1PA13 LINE L1 5380 6161 -2 229 190 246 44 chr3 144187955 144188070 -73849088 + MIR SINE MIR 91 249 -13 588 312 40 14 chr3 144188209 144188434 -73848724 + MIR SINE MIR 20 258 -4 1410 189 132 86 chr3 144189171 144189694 -73847464 - MLT1E2 LTR MaLR 0 626 80 371 279 79 0 chr3 144189590 144189730 -73847428 - MLT2C1 LTR ERVL -199 198 48 * 218 340 43 53 chr3 144190153 144190247 -73846911 - L2 LINE L2 -92 3180 3088 216 0 0 0 chr3 144190309 144190333 -73846825 + (T)n Simple_repeat Simple_repeat 1 24 0 222 293 131 9 chr3 144190408 144190555 -73846603 - MIR SINE MIR -69 139 31 1069 231 12 21 chr3 144190611 144191116 -73846042 + MLT1F LTR MaLR 1 542 0 270 333 29 9 chr3 144191145 144191250 -73845908 - L2 LINE L2 -484 2830 2724 398 20 20 0 chr3 144191580 144191631 -73845527 + (TG)n Simple_repeat Simple_repeat 2 53 0 2271 110 3 0 chr3 144192083 144192374 -73844784 + AluSx SINE Alu 1 292 -20 2328 24 0 0 chr3 144192381 144192807 -73844351 - L1P2 LINE L1 -630 5525 5100 2685 37 6 0 chr3 144192807 144193132 -73844026 + L1PA4 LINE L1 5826 6155 0 630 335 5 28 chr3 144193232 144193444 -73843714 + MIR3 SINE MIR 2 208 0 845 143 0 8 chr3 144193479 144193612 -73843546 + FLAM_C SINE Alu 2 133 0 918 199 11 5 chr3 144194884 144195070 -73842088 - MER5A DNA MER1_type -2 187 1 379 252 148 0 chr3 144195350 144195485 -73841673 - MIR SINE MIR -75 187 33 201 294 73 37 chr3 144198433 144198542 -73838616 - MIR3 SINE MIR -1 207 95 23 0 0 0 chr3 144198752 144198775 -73838383 + AT_rich Low_complexity Low_complexity 1 23 0 584 304 61 14 chr3 144199472 144199686 -73837472 - MIR SINE MIR -6 256 33 183 309 24 0 chr3 144199881 144199923 -73837235 - L2 LINE L2 -20 3252 3210 241 266 18 18 chr3 144200125 144200234 -73836924 + L1P LINE L1 5317 5425 -740 2374 124 11 0 chr3 144200234 144200614 -73836544 - HSMAR2 DNA Mariner -918 384 1 231 274 0 0 chr3 144200680 144200731 -73836427 + L3 LINE CR1 1512 1562 -15 2120 115 20 3 chr3 144200905 144201200 -73835958 - AluSx SINE Alu -12 300 1 306 270 0 0 chr3 144204973 144205036 -73832122 - MIR SINE MIR -93 169 107 2418 77 7 0 chr3 144206714 144207012 -73830146 + AluY SINE Alu 1 300 -11 302 253 11 23 chr3 144207152 144207239 -73829919 + (CATA)n Simple_repeat Simple_repeat 2 87 0 999 311 38 2 chr3 144207263 144207681 -73829477 - L1MC4a LINE L1 -1941 5867 5435 228 286 187 11 chr3 144207712 144207803 -73829355 - L2 LINE L2 -5 3267 3161 4703 65 0 3 chr3 144409617 144410201 -73626957 + L1PA5 LINE L1 5572 6153 -1 3180 177 5 7 chr3 144410262 144410844 -73626314 - L1MB5 LINE L1 -9 6165 5585 857 322 91 59 chr3 144411379 144411886 -73625272 + L1ME LINE L1 3905 4394 -1752 1753 116 33 25 chr3 144411886 144412162 -73624996 + AluSx SINE Alu 1 278 -34 264 77 0 0 chr3 144412167 144412206 -73624952 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 857 322 91 59 chr3 144412206 144412551 -73624607 + L1ME LINE L1 4397 4814 -1332 423 73 15 0 chr3 144412714 144412782 -73624376 - L1MA7 LINE L1 -4 6287 6219 519 309 102 71 chr3 144413075 144413428 -73623730 + L1ME LINE L1 5262 5625 -496 1268 193 38 8 chr3 144413476 144413714 -73623444 - MLT2F LTR ERVL -55 608 364 201 154 0 0 chr3 144413826 144413865 -73623293 + (CATA)n Simple_repeat Simple_repeat 2 40 0 25 0 0 0 chr3 144413867 144413892 -73623266 + AT_rich Low_complexity Low_complexity 1 25 0 988 261 105 21 chr3 144414179 144414504 -73622654 - L2 LINE L2 -11 3302 2951 794 228 93 23 chr3 144418252 144418467 -73618691 - MIR SINE MIR -13 249 20 1343 252 29 62 chr3 144418718 144419103 -73618055 - MLT1J1 LTR MaLR -11 435 64 1167 285 78 26 chr3 144419172 144419272 -73617886 - LTR16C LTR ERVL 0 491 398 2202 105 3 3 chr3 144419272 144419578 -73617580 + AluSq SINE Alu 1 306 -7 1167 285 78 26 chr3 144419578 144419940 -73617218 - LTR16C LTR ERVL -93 398 5 1817 211 64 15 chr3 144420444 144420936 -73616222 - REP3 LTR ERV 0 562 1 22676 56 4 0 chr3 144421404 144424528 -73612630 + L1P2 LINE L1 2527 5663 -491 572 183 31 115 chr3 144424862 144424932 -73612226 - MER5B DNA MER1_type -3 175 101 2197 92 0 0 chr3 144424932 144425226 -73611932 + AluSx SINE Alu 2 295 -17 572 183 31 115 chr3 144425226 144425346 -73611812 - MER5B DNA MER1_type -77 101 1 462 265 81 4 chr3 144426443 144426590 -73610568 - MIR SINE MIR -46 162 3 2023 93 34 7 chr3 144426754 144427045 -73610113 - AluSg SINE Alu -11 299 1 780 204 26 7 chr3 144427119 144427271 -73609887 - LTR32 LTR ERVL 0 471 317 1482 147 3 28 chr3 144427280 144427599 -73609559 - AluY SINE Alu 0 311 1 1007 198 25 112 chr3 144429369 144429692 -73607466 + MER51C LTR ERV1 346 640 0 425 255 0 19 chr3 144429696 144429802 -73607356 - MLT1C LTR MaLR 0 467 364 7951 69 8 3 chr3 144430248 144431298 -73605860 + L1P LINE L1 1338 2392 -3754 219 323 17 0 chr3 144432141 144432218 -73604940 + MIR SINE MIR 66 148 -60 2034 122 6 3 chr3 144432220 144432532 -73604626 - AluSq SINE Alu 0 313 1 3195 73 0 0 chr3 144432612 144433024 -73604134 - L1PA6 LINE L1 -2 6152 5741 23 0 0 0 chr3 144433032 144433055 -73604103 + AT_rich Low_complexity Low_complexity 1 23 0 1768 148 7 14 chr3 144433060 144433357 -73603801 + AluSq SINE Alu 1 295 -18 756 94 9 0 chr3 144433526 144433632 -73603526 - AluSq/x SINE Alu -204 108 2 183 302 95 8 chr3 144434046 144434172 -73602986 - MIR SINE MIR -33 229 93 200 119 0 48 chr3 144434844 144434886 -73602272 + (TCCCC)n Simple_repeat Simple_repeat 3 42 0 24 0 8 0 chr3 144435214 144435277 -73601881 + GC_rich Low_complexity Low_complexity 1 24 0 58 17 0 0 chr3 144435354 144435414 -73601744 + GC_rich Low_complexity Low_complexity 1 60 0 21 57 0 0 chr3 144435780 144435815 -73601343 + GC_rich Low_complexity Low_complexity 1 35 0 1221 118 113 48 chr3 144435945 144436019 -73601139 - MSTA LTR MaLR -184 244 176 1886 120 33 0 chr3 144436019 144436295 -73600863 + AluSx SINE Alu 1 285 -27 1221 118 113 48 chr3 144436295 144436449 -73600709 - MSTA LTR MaLR -252 176 1 1222 239 25 0 chr3 144436763 144437043 -73600115 - AluJb SINE Alu -25 287 1 231 224 73 97 chr3 144437195 144437360 -73599798 + FRAM SINE Alu 1 152 -14 1130 97 34 0 chr3 144437652 144437827 -73599331 - Tigger7 DNA MER2_type -4 2483 2303 954 145 0 36 chr3 144437829 144437995 -73599163 - FRAM SINE Alu -19 157 1 595 83 0 42 chr3 144437995 144438091 -73599067 - Tigger7 DNA MER2_type -177 2310 2219 1409 194 7 18 chr3 144438105 144438383 -73598775 + Tigger7 DNA MER2_type 72 346 -204 287 247 52 13 chr3 144438380 144438457 -73598701 - Tigger7 DNA MER2_type -653 80 1 * 2226 96 0 0 chr3 144438602 144438895 -73598263 + AluSc SINE Alu 11 303 -6 871 205 147 0 chr3 144439303 144439493 -73597665 - AluJb SINE Alu -84 228 11 2162 111 7 0 chr3 144439620 144439926 -73597232 - AluSq SINE Alu -5 308 1 678 165 0 0 chr3 144440211 144440308 -73596850 + AluSg SINE Alu 2 98 -212 533 228 92 15 chr3 144440451 144440619 -73596539 - MLT1G1 LTR MaLR -156 412 201 2206 111 0 13 chr3 144440670 144440986 -73596172 + AluSx SINE Alu 1 312 0 465 266 50 7 chr3 144441025 144441164 -73595994 - MLT1G1 LTR MaLR -379 176 32 180 219 0 0 chr3 144441164 144441205 -73595953 + (TATATG)n Simple_repeat Simple_repeat 6 46 0 303 263 62 12 chr3 144441205 144441285 -73595873 - L1MC4 LINE L1 -1339 6703 6620 29 60 0 0 chr3 144441447 144441497 -73595661 + AT_rich Low_complexity Low_complexity 1 50 0 545 269 120 14 chr3 144441509 144441792 -73595366 - L1ME4a LINE L1 -27 6094 5782 2217 95 7 0 chr3 144441800 144442106 -73595052 - AluSx SINE Alu -4 308 1 305 279 10 29 chr3 144442106 144442210 -73594948 - LTR67 LTR ERVL 0 557 456 2307 211 40 60 chr3 144442227 144442587 -73594571 - MLT1G LTR MaLR 0 590 245 2388 78 0 3 chr3 144442587 144442896 -73594262 - AluSq SINE Alu -5 308 1 2307 211 40 60 chr3 144442896 144443137 -73594021 - MLT1G LTR MaLR -345 245 1 347 255 20 10 chr3 144443138 144443236 -73593922 - MLT1J2 LTR MaLR -8 442 344 374 223 68 107 chr3 144443538 144443744 -73593414 - L1ME4a LINE L1 -290 5831 5634 360 0 0 0 chr3 144443803 144443843 -73593315 + (CA)n Simple_repeat Simple_repeat 2 41 0 2106 99 7 7 chr3 144443918 144444220 -73592938 - AluSx SINE Alu -10 302 1 432 316 54 18 chr3 144444293 144444461 -73592697 - MIR SINE MIR -38 224 51 591 284 212 26 chr3 144444462 144444811 -73592347 + MLT1H1 LTR MaLR 175 553 -2 342 294 34 25 chr3 144445491 144445610 -73591548 - MER5A DNA MER1_type -1 188 69 1537 192 16 19 chr3 144445628 144445935 -73591223 - AluJb SINE Alu -6 306 1 2014 135 3 0 chr3 144446348 144446644 -73590514 + AluSp SINE Alu 1 297 -16 3442 166 32 5 chr3 144446652 144447248 -73589910 + L1MB5 LINE L1 5499 6110 -64 1291 103 0 49 chr3 144447260 144447464 -73589694 - AluSg/x SINE Alu -15 297 104 45260 36 1 1 chr3 144447581 144453590 -73583568 - L1PA3 LINE L1 -142 6013 5 1927 136 10 3 chr3 144453691 144453985 -73583173 - AluJo SINE Alu -14 298 3 545 131 0 199 chr3 144454195 144454319 -73582839 + MER45A DNA AcHobo 17 98 -1483 2140 78 0 39 chr3 144454319 144454626 -73582532 + AluY SINE Alu 1 295 -16 545 131 0 199 chr3 144454626 144454677 -73582481 + MER45A DNA AcHobo 98 157 -21 276 179 143 12 chr3 144454962 144455046 -73582112 + MIR SINE MIR 96 190 -72 802 223 0 0 chr3 144455067 144455239 -73581919 - AluJb SINE Alu 0 309 138 251 245 50 82 chr3 144455368 144455527 -73581631 - L2 LINE L2 0 3313 3160 246 307 171 0 chr3 144455555 144455643 -73581515 - L2 LINE L2 -52 3220 3118 383 299 39 32 chr3 144455716 144455870 -73581288 - MIR SINE MIR -76 186 32 333 0 0 0 chr3 144455890 144455927 -73581231 + (TG)n Simple_repeat Simple_repeat 2 38 0 212 374 36 36 chr3 144455988 144456183 -73580975 - L2 LINE L2 -188 3084 2890 664 103 0 0 chr3 144456198 144456285 -73580873 + AluJ/FLAM SINE Alu 11 97 -215 469 289 96 39 chr3 144456702 144456910 -73580248 - Charlie8 DNA MER1_type -2183 234 15 1357 150 20 11 chr3 144457171 144457513 -73579645 - MSTA LTR MaLR 0 428 1 342 0 0 0 chr3 144457618 144457656 -73579502 + (TG)n Simple_repeat Simple_repeat 1 38 0 213 194 0 0 chr3 144457661 144457697 -73579461 + polypurine Low_complexity Low_complexity 2 37 0 389 259 109 14 chr3 144457994 144458141 -73579017 + MIR SINE MIR 74 234 -28 182 283 33 43 chr3 144458219 144458274 -73578884 - MIR SINE MIR 0 262 207 2232 95 0 0 chr3 144458274 144458569 -73578589 - AluSg SINE Alu -13 297 3 182 283 33 43 chr3 144458569 144458605 -73578553 - MIR SINE MIR -55 207 172 2138 97 0 29 chr3 144458909 144459219 -73577939 + AluSg SINE Alu 1 301 -9 767 177 8 0 chr3 144459703 144459833 -73577325 + FAM SINE Alu 1 131 -54 293 122 0 0 chr3 144459833 144459874 -73577284 - Alu SINE Alu -259 41 1 2027 121 10 0 chr3 144459901 144460191 -73576967 + AluSx SINE Alu 2 294 -18 2213 103 0 10 chr3 144460293 144460605 -73576553 + AluSg SINE Alu 1 309 -1 186 316 53 0 chr3 144460756 144460813 -73576345 - L3 LINE CR1 -907 670 611 332 304 46 82 chr3 144460897 144461203 -73575955 + L2 LINE L2 2887 3181 -91 406 262 8 41 chr3 144461775 144461897 -73575261 + L2 LINE L2 2683 2800 -514 700 122 0 0 chr3 144462648 144462746 -73574412 + AluSg/x SINE Alu 206 303 -9 2642 33 0 0 chr3 144462846 144463151 -73574007 + AluY SINE Alu 2 306 -5 375 269 23 69 chr3 144463192 144463322 -73573836 + MIR SINE MIR 11 134 -128 367 227 0 0 chr3 144463391 144463466 -73573692 + AluJ/FLAM SINE Alu 1 75 -227 815 171 5 67 chr3 144463466 144463659 -73573499 + AluJo/FRAM SINE Alu 132 312 0 368 226 0 0 chr3 144463713 144463775 -73573383 + AluS SINE Alu 1 62 -239 1633 220 65 77 chr3 144463792 144464223 -73572935 - MLT1H1 LTR MaLR 0 555 131 1993 124 6 22 chr3 144464223 144464537 -73572621 - AluSx SINE Alu -1 311 3 1633 220 65 77 chr3 144464537 144464663 -73572495 - MLT1H1 LTR MaLR -424 131 5 309 192 26 64 chr3 144464804 144464882 -73572276 + MIR SINE MIR 79 153 -109 1965 132 20 0 chr3 144464927 144465231 -73571927 + AluSx SINE Alu 1 310 -2 1815 124 0 25 chr3 144465239 144465522 -73571636 + AluSx SINE Alu 1 276 -36 500 278 162 30 chr3 144465835 144466272 -73570886 - L2 LINE L2 -104 3209 2710 2161 98 10 0 chr3 144466618 144466924 -73570234 - AluY SINE Alu -2 309 1 2223 77 0 3 chr3 144467248 144467545 -73569613 + AluSg SINE Alu 1 296 -14 2061 121 3 3 chr3 144467545 144467843 -73569315 + AluSx SINE Alu 1 298 -14 468 205 0 0 chr3 144467876 144467954 -73569204 - Tigger5 DNA MER2_type -2244 79 2 533 259 179 22 chr3 144468172 144468607 -73568551 - MLT1H LTR MaLR 0 549 23 459 0 0 0 chr3 144468738 144468789 -73568369 + (CA)n Simple_repeat Simple_repeat 2 52 0 553 246 56 46 chr3 144468846 144469041 -73568117 + MLT1L LTR MaLR 109 305 -310 336 268 71 0 chr3 144469107 144469219 -73567939 + MLT1L LTR MaLR 427 546 -69 495 197 213 40 chr3 144469401 144469613 -73567545 + MIR SINE MIR 8 255 -7 2121 95 0 3 chr3 144469652 144469962 -73567196 + AluSx SINE Alu 1 309 0 468 222 37 22 chr3 144470193 144470328 -73566830 + MER103 DNA DNA 11 147 -19 183 212 0 0 chr3 144471190 144471223 -73565935 - L2 LINE L2 -13 3300 3268 331 234 54 36 chr3 144471805 144471916 -73565242 - L1M4 LINE L1 -2961 3185 3073 665 212 0 0 chr3 144471920 144472038 -73565120 - AluJb SINE Alu -193 119 2 215 213 16 33 chr3 144472040 144472101 -73565057 + MIR3 SINE MIR 101 160 -48 2408 58 0 10 chr3 144472159 144472468 -73564690 + AluY SINE Alu 1 306 -5 375 269 23 69 chr3 144472509 144472639 -73564519 + MIR SINE MIR 11 134 -128 367 227 0 0 chr3 144472708 144472783 -73564375 + AluJ/FLAM SINE Alu 1 75 -227 815 171 5 67 chr3 144472783 144472976 -73564182 + AluJo/FRAM SINE Alu 132 312 0 368 226 0 0 chr3 144473030 144473092 -73564066 + AluS SINE Alu 1 62 -237 1439 234 64 80 chr3 144473109 144473542 -73563616 - MLT1H1 LTR MaLR 0 555 132 1989 122 6 22 chr3 144473542 144473853 -73563305 - AluSx SINE Alu -4 308 3 1439 234 64 80 chr3 144473853 144473979 -73563179 - MLT1H1 LTR MaLR -423 132 5 199 181 83 83 chr3 144474108 144474180 -73562978 + MIR SINE MIR 79 150 -112 2017 103 0 30 chr3 144474342 144474642 -73562516 + AluSg SINE Alu 1 291 -19 21 0 0 0 chr3 144474675 144474696 -73562462 + AT_rich Low_complexity Low_complexity 1 21 0 1750 134 0 18 chr3 144474862 144475145 -73562013 - AluJo SINE Alu -8 304 27 35 24 0 0 chr3 144475182 144475224 -73561934 + AT_rich Low_complexity Low_complexity 1 42 0 1997 90 36 4 chr3 144475245 144475570 -73561588 - AluSq SINE Alu 0 334 1 237 328 72 26 chr3 144475590 144475785 -73561373 + HAL1b LINE L1 97 300 -1048 1014 124 0 0 chr3 144475794 144475939 -73561219 - AluSq/x SINE Alu -166 147 3 751 251 52 46 chr3 144475941 144476287 -73560871 + HAL1b LINE L1 776 1123 -225 764 198 0 0 chr3 144476292 144476418 -73560740 + FLAM_C SINE Alu 1 126 -17 1603 155 12 47 chr3 144476422 144476744 -73560414 + AluJb SINE Alu 1 311 -1 1889 180 11 21 chr3 144476797 144477170 -73559988 - L1MC4 LINE L1 -251 7791 7423 2644 189 99 51 chr3 144477622 144477645 -73559513 + L1MC4 LINE L1 7049 7069 -973 428 0 19 0 chr3 144477645 144477697 -73559461 + (CA)n Simple_repeat Simple_repeat 2 54 0 2644 189 99 51 chr3 144477697 144477715 -73559443 + L1MC4 LINE L1 7069 7085 -957 2182 88 3 0 chr3 144477715 144478025 -73559133 - AluSp SINE Alu 0 311 1 2644 189 99 51 chr3 144478025 144478463 -73558695 + L1MC4 LINE L1 7085 7576 -466 1934 218 15 24 chr3 144478463 144478930 -73558228 + MLT1C LTR MaLR 5 467 0 2644 189 99 51 chr3 144478930 144479147 -73558011 + L1MC4 LINE L1 7576 7781 -261 1342 192 11 0 chr3 144479246 144479507 -73557651 - L1PA13 LINE L1 -3487 3310 3047 5549 207 23 21 chr3 144479521 144479623 -73557535 - L1PA13 LINE L1 -4193 2604 2504 2011 134 10 0 chr3 144479623 144479930 -73557228 - AluSx SINE Alu -2 310 1 5549 207 23 21 chr3 144479930 144481328 -73555830 - L1PA13 LINE L1 -4293 2504 1096 24 0 0 0 chr3 144481354 144481378 -73555780 + AT_rich Low_complexity Low_complexity 1 24 0 593 148 16 0 chr3 144483235 144483347 -73553811 + L1MC4 LINE L1 7877 8042 0 1465 302 89 25 chr3 144483357 144484076 -73553082 - HERVL LTR ERVL -2592 3062 2298 182 256 0 0 chr3 144484109 144484148 -73553010 + MIR SINE MIR 223 261 -1 339 299 10 0 chr3 144484225 144484322 -73552836 + HsTC2 DNA Tc2 2 99 -1799 528 163 65 105 chr3 144484384 144484494 -73552664 + MER69 DNA AcHobo 1 105 -1121 1581 163 31 17 chr3 144484494 144484782 -73552376 - AluSx SINE Alu -20 292 1 528 163 65 105 chr3 144484782 144484824 -73552334 + MER69 DNA AcHobo 105 147 -1079 252 214 36 0 chr3 144484819 144484875 -73552283 + MER69 DNA AcHobo 2449 2506 -20 * 437 215 0 13 chr3 144484908 144484987 -73552171 + Tigger5 DNA MER2_type 1 78 -2245 373 197 14 0 chr3 144485015 144485086 -73552072 + Tigger5 DNA MER2_type 2252 2323 0 250 284 0 0 chr3 144485347 144485414 -73551744 + HsTC2 DNA Tc2 1823 1889 -9 673 207 0 21 chr3 144485580 144485592 -73551566 - AluJ SINE Alu -4 308 297 2086 121 0 0 chr3 144485592 144485897 -73551261 - AluSg SINE Alu -5 305 1 673 207 0 21 chr3 144485897 144486024 -73551134 - AluJ SINE Alu -15 297 172 5119 158 346 21 chr3 144486024 144487337 -73549821 + MER52A LTR ERV1 2 1741 -14 513 108 0 128 chr3 144487337 144487370 -73549788 + 5S rRNA rRNA 2 38 -83 2629 29 0 3 chr3 144487370 144487681 -73549477 - AluY SINE Alu -1 310 1 513 108 0 128 chr3 144487681 144487749 -73549409 + 5S rRNA rRNA 38 90 -31 974 166 0 28 chr3 144487779 144487960 -73549198 - AluJ SINE Alu -136 176 1 7147 147 26 18 chr3 144487960 144489577 -73547581 + L1MA4 LINE L1 4087 5689 -482 1983 128 20 0 chr3 144489577 144489875 -73547283 + AluSx SINE Alu 1 304 -8 7147 147 26 18 chr3 144489875 144490236 -73546922 + L1MA4 LINE L1 5689 6122 -49 2308 87 3 0 chr3 144490236 144490546 -73546612 + AluY SINE Alu 1 311 0 7147 147 26 18 chr3 144490546 144490597 -73546561 + L1MA4 LINE L1 6122 6171 0 7314 46 7 2 chr3 144490607 144492037 -73545121 - L1PA6 LINE L1 -21 6133 4698 695 245 41 41 chr3 144492154 144492399 -73544759 + L1M4 LINE L1 3422 3666 -2480 1572 183 10 7 chr3 144492412 144492713 -73544445 + AluJo SINE Alu 1 302 -10 409 228 109 11 chr3 144493096 144493280 -73543878 - L1MC5 LINE L1 -52 7909 7708 981 186 51 0 chr3 144493281 144493458 -73543700 - MER20 DNA MER1_type -4 215 30 308 206 43 65 chr3 144493492 144493562 -73543596 - L1MC5 LINE L1 -243 7718 7649 2137 99 7 3 chr3 144493562 144493854 -73543304 - AluSx SINE Alu -19 293 1 308 206 43 65 chr3 144493854 144493875 -73543283 - L1MC5 LINE L1 -312 7649 7629 295 305 12 0 chr3 144493893 144493975 -73543183 + MER117 DNA MER1_type 46 128 -69 641 201 0 45 chr3 144493975 144494109 -73543049 - FLAM_C SINE Alu -14 129 2 875 297 107 13 chr3 144494324 144494718 -73542440 + L1ME4a LINE L1 5492 5922 -199 272 249 63 63 chr3 144494804 144494974 -73542184 + L1ME4a LINE L1 5901 6074 -47 2031 104 0 14 chr3 144494974 144495286 -73541872 - AluSx SINE Alu 0 308 1 272 249 63 63 chr3 144495286 144495319 -73541839 + L1ME4a LINE L1 6073 6105 -16 2142 100 7 0 chr3 144495347 144495647 -73541511 - AluSp SINE Alu -11 302 1 486 200 0 0 chr3 144495686 144495781 -73541377 - MER53 DNA DNA -94 95 1 186 133 0 0 chr3 144495964 144495994 -73541164 + (CACCAT)n Simple_repeat Simple_repeat 2 31 0 303 252 156 15 chr3 144496679 144496814 -73540344 + L1M4 LINE L1 3047 3200 -2946 390 196 163 0 chr3 144496814 144496906 -73540252 - MIR SINE MIR -109 153 47 1236 254 137 27 chr3 144497194 144497639 -73539519 - MLT1G LTR MaLR 0 590 97 1546 164 10 35 chr3 144497639 144497951 -73539207 + AluJo SINE Alu 1 304 -8 662 212 8 0 chr3 144497955 144498087 -73539071 + FLAM_A SINE Alu 1 133 0 457 299 36 60 chr3 144498227 144498562 -73538596 + L1M4 LINE L1 4491 4817 -1329 463 155 74 74 chr3 144499583 144499637 -73537521 - MLT2E LTR ERVL -2 626 573 2148 109 0 3 chr3 144499637 144499939 -73537219 + AluSq SINE Alu 1 301 -12 463 155 74 74 chr3 144499939 144500032 -73537126 - MLT2E LTR ERVL -54 574 479 1336 235 62 7 chr3 144500073 144500379 -73536779 - MLT2E LTR ERVL -254 374 52 1888 113 3 45 chr3 144500379 144500671 -73536487 + AluSq SINE Alu 1 280 -33 960 104 0 35 chr3 144500673 144500846 -73536312 + (GGAA)n Simple_repeat Simple_repeat 3 169 0 2457 71 0 0 chr3 144500847 144501157 -73536001 + AluY SINE Alu 1 310 -1 802 144 11 17 chr3 144501157 144501331 -73535827 + GA-rich Low_complexity Low_complexity 2 174 0 442 152 15 0 chr3 144501331 144501397 -73535761 - MLT2E LTR ERVL -561 67 1 814 74 0 19 chr3 144501801 144501909 -73535249 - FRAM SINE Alu -31 145 40 580 243 79 90 chr3 144502038 144502447 -73534711 + MLT1L LTR MaLR 2 463 -152 1832 131 3 3 chr3 144502472 144502754 -73534404 - AluSx SINE Alu -30 282 1 1899 174 31 17 chr3 144502869 144503225 -73533933 + MLT1A2 LTR MaLR 1 361 -13 850 283 33 12 chr3 144503261 144503501 -73533657 - MIR SINE MIR -3 259 15 195 279 190 0 chr3 144503505 144503584 -73533574 + L2 LINE L2 3143 3236 -36 188 252 103 47 chr3 144503590 144503697 -73533461 - MIR SINE MIR -12 250 138 540 317 30 15 chr3 144503980 144504182 -73532976 + MIR SINE MIR 2 206 -56 719 173 0 115 chr3 144504187 144504257 -73532901 + MER5A DNA MER1_type 2 46 -143 1479 206 3 17 chr3 144504257 144504549 -73532609 - AluJb SINE Alu -19 293 6 719 173 0 115 chr3 144504549 144504634 -73532524 + MER5A DNA MER1_type 46 139 -50 938 191 0 17 chr3 144504635 144504813 -73532345 - FRAM SINE Alu -1 175 1 270 233 0 0 chr3 144504819 144504879 -73532279 + MER5A DNA MER1_type 130 189 0 1963 129 0 23 chr3 144504889 144505192 -73531966 - AluSx SINE Alu -14 298 3 288 0 0 0 chr3 144505900 144505932 -73531226 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 619 220 0 0 chr3 144505937 144506046 -73531112 - FLAM_A SINE Alu -33 109 1 1907 221 24 29 chr3 144506313 144506419 -73530739 + L1ME1 LINE L1 5713 5818 -348 2107 96 38 0 chr3 144506419 144506711 -73530447 - AluSx SINE Alu -9 303 1 1907 221 24 29 chr3 144506711 144507056 -73530102 + L1ME1 LINE L1 5818 6162 -4 309 323 57 25 chr3 144507735 144507893 -73529265 - L1ME4a LINE L1 -64 6057 5895 1799 98 22 29 chr3 144508037 144508314 -73528844 + AluSx SINE Alu 22 296 -16 1705 229 101 36 chr3 144508319 144508589 -73528569 - MLT1F LTR MaLR -13 529 278 644 167 9 9 chr3 144508589 144508703 -73528455 + MER81 DNA DNA 1 114 0 1705 229 101 36 chr3 144508703 144508929 -73528229 - MLT1F LTR MaLR -264 278 1 654 263 74 48 chr3 144508929 144509193 -73527965 - MLT1G1 LTR MaLR -26 569 201 1905 118 17 3 chr3 144509249 144509538 -73527620 + AluSc SINE Alu 6 298 -11 204 40 0 0 chr3 144509583 144509608 -73527550 + (CAT)n Simple_repeat Simple_repeat 1 25 0 669 267 104 14 chr3 144509623 144509844 -73527314 - MIR SINE MIR -10 252 12 752 176 0 0 chr3 144510461 144510586 -73526572 + FRAM SINE Alu 33 157 -19 310 273 83 68 chr3 144510718 144510850 -73526308 - MIR SINE MIR -73 189 56 2289 104 0 3 chr3 144511282 144511581 -73525577 + AluSx SINE Alu 1 298 -14 351 0 0 0 chr3 144511620 144511659 -73525499 + (CA)n Simple_repeat Simple_repeat 2 40 0 553 251 64 5 chr3 144511687 144511874 -73525284 + L1MD3 LINE L1 7798 7995 0 1061 281 99 9 chr3 144512055 144512379 -73524779 + MLT1J2 LTR MaLR 24 376 -74 1995 159 0 0 chr3 144512379 144512675 -73524483 + AluSq SINE Alu 1 296 -17 554 291 50 18 chr3 144514180 144514400 -73522758 + MIR SINE MIR 23 249 -13 2187 78 36 16 chr3 144516492 144516799 -73520359 - MLT2A1 LTR ERVL -131 313 1 22 0 0 0 chr3 144516836 144516858 -73520300 + AT_rich Low_complexity Low_complexity 1 22 0 342 313 52 0 chr3 144516990 144517105 -73520053 - MIR SINE MIR -118 144 24 333 220 11 11 chr3 144517444 144517535 -73519623 + L1ME LINE L1 5347 5437 -684 4087 172 24 37 chr3 144517804 144518326 -73518832 - ERVL LTR ERVL -824 4940 4430 2239 120 7 0 chr3 144518326 144518634 -73518524 + AluSx SINE Alu 1 310 -2 4087 172 24 37 chr3 144518634 144518903 -73518255 - ERVL LTR ERVL -1334 4430 4159 11099 30 0 6 chr3 144519151 144520798 -73516360 + L1P2 LINE L1 4127 5760 -395 741 158 18 18 chr3 144520915 144521079 -73516079 + Charlie5 DNA MER1_type 2421 2584 -28 184 389 67 0 chr3 144521092 144521182 -73515976 + L2 LINE L2 3208 3303 -10 705 154 8 8 chr3 144522169 144522299 -73514859 - MER53 DNA DNA -59 130 1 2271 100 7 0 chr3 144523351 144523652 -73513506 - AluSg SINE Alu -7 303 1 287 280 38 30 chr3 144524896 144525028 -73512130 + MIR SINE MIR 20 152 -110 380 280 30 54 chr3 144525352 144525520 -73511638 + MIR3 SINE MIR 13 176 -32 380 211 0 13 chr3 144525776 144525852 -73511306 + MLT1J LTR MaLR 99 173 -338 265 206 73 29 chr3 144525831 144525899 -73511259 + MLT1L LTR MaLR 217 287 -328 * 3700 8 0 0 chr3 144525928 144526309 -73510849 + SVA Other Other 1001 1381 -5 189 0 0 0 chr3 144526312 144526333 -73510825 + (T)n Simple_repeat Simple_repeat 1 21 0 501 255 102 107 chr3 144526341 144526537 -73510621 + MLT1L LTR MaLR 231 482 -86 507 198 0 0 chr3 144526558 144526659 -73510499 + MER5A DNA MER1_type 9 109 -80 268 234 0 31 chr3 144526684 144526748 -73510410 + AluJ/FLAM SINE Alu 5 66 -236 21 0 0 0 chr3 144526879 144526900 -73510258 + AT_rich Low_complexity Low_complexity 1 21 0 338 231 9 37 chr3 144527519 144527627 -73509531 + GA-rich Low_complexity Low_complexity 5 109 0 210 335 31 25 chr3 144528354 144528515 -73508643 + L2 LINE L2 2596 2757 -557 266 244 8 76 chr3 144528617 144528736 -73508422 + L2 LINE L2 2943 3053 -219 1560 195 16 19 chr3 144530496 144530803 -73506355 - AluJb SINE Alu -6 306 1 1863 146 4 0 chr3 144531216 144531484 -73505674 + AluSp SINE Alu 1 269 -44 611 247 41 0 chr3 144531981 144532151 -73505007 - L1M4 LINE L1 -2644 3502 3326 284 224 286 3 chr3 144532249 144532378 -73504780 - MIR SINE MIR -27 181 20 359 295 36 0 chr3 144532422 144532534 -73504624 + MER5B DNA MER1_type 55 170 -8 631 271 114 44 chr3 144532660 144533003 -73504155 - MLT1H1 LTR MaLR -106 449 83 951 168 84 11 chr3 144533008 144533187 -73503971 - LTR32 LTR ERVL 0 471 280 293 161 125 0 chr3 144533187 144533243 -73503915 + AluJ/FLAM SINE Alu 5 67 -235 33 0 0 0 chr3 144533246 144533279 -73503879 + AT_rich Low_complexity Low_complexity 1 33 0 2232 103 3 0 chr3 144533296 144533586 -73503572 - AluSx SINE Alu -21 291 1 1442 160 72 19 chr3 144533589 144533851 -73503307 - LTR32 LTR ERVL -181 290 15 5137 42 0 0 chr3 144533908 144534510 -73502648 - L1PA3 LINE L1 0 6155 5554 2354 93 6 6 chr3 144534546 144534859 -73502299 + AluSp SINE Alu 1 313 0 580 96 43 9 chr3 144534874 144534989 -73502169 + GA-rich Low_complexity Low_complexity 2 120 0 2333 103 0 25 chr3 144535548 144535868 -73501290 + AluSx SINE Alu 1 312 0 21 0 0 0 chr3 144535990 144536011 -73501147 + AT_rich Low_complexity Low_complexity 1 21 0 263 215 147 55 chr3 144536037 144536200 -73500958 + L1MC5 LINE L1 7724 7901 -60 363 241 76 85 chr3 144536251 144536487 -73500671 + MIR SINE MIR 23 256 -6 383 312 126 32 chr3 144536656 144537028 -73500130 - L2 LINE L2 -4 3268 2862 190 133 0 67 chr3 144537192 144537252 -73499906 + (GA)n Simple_repeat Simple_repeat 2 57 0 2474 113 8 32 chr3 144537268 144537640 -73499518 - THE1B LTR MaLR -1 363 1 2196 70 22 0 chr3 144538342 144538615 -73498543 - AluSq SINE Alu -11 302 24 997 284 104 72 chr3 144538963 144539471 -73497687 - L2 LINE L2 -2 3311 2821 1532 170 3 56 chr3 144539471 144539759 -73497399 - AluJo SINE Alu -39 273 1 997 284 104 72 chr3 144539759 144540162 -73496996 - L2 LINE L2 -492 2821 2365 2152 109 7 7 chr3 144540162 144540464 -73496694 - AluSq SINE Alu -11 302 1 997 284 104 72 chr3 144540464 144540666 -73496492 - L2 LINE L2 -948 2365 2171 2295 98 10 0 chr3 144541313 144541619 -73495539 + AluY SINE Alu 1 309 -2 649 276 184 16 chr3 144541973 144542477 -73494681 + L2 LINE L2 2718 3311 -2 238 297 55 11 chr3 144542728 144542819 -73494339 + MIR SINE MIR 77 171 -91 645 165 101 57 chr3 144542922 144543080 -73494078 - MIR SINE MIR -77 185 21 259 333 67 0 chr3 144543044 144543149 -73494009 + MIR SINE MIR 34 145 -117 * 2141 146 10 0 chr3 144543182 144543491 -73493667 + AluSx SINE Alu 1 312 0 1892 168 139 19 chr3 144543573 144543990 -73493168 + MLT1C LTR MaLR 1 467 0 1885 154 4 0 chr3 144544783 144545062 -73492096 + AluJo SINE Alu 1 280 -32 298 163 0 0 chr3 144545087 144545136 -73492022 + L1PB4 LINE L1 6090 6138 -18 23 33 0 0 chr3 144545138 144545168 -73491990 + AT_rich Low_complexity Low_complexity 1 30 0 2161 100 13 27 chr3 144545282 144545582 -73491576 + AluSx SINE Alu 1 296 -16 1679 227 101 36 chr3 144545587 144545857 -73491301 - MLT1F LTR MaLR -13 529 278 638 167 9 9 chr3 144545857 144545971 -73491187 + MER81 DNA DNA 1 114 0 1679 227 101 36 chr3 144545971 144546197 -73490961 - MLT1F LTR MaLR -264 278 1 630 280 121 17 chr3 144546197 144546483 -73490675 - MLT1G1 LTR MaLR -26 569 159 2178 111 7 3 chr3 144546512 144546809 -73490349 + AluSq SINE Alu 1 298 -15 286 289 36 0 chr3 144546880 144546963 -73490195 + MER58 DNA MER1_type 28 113 -2307 1284 198 95 41 chr3 144547190 144547558 -73489600 - MLT1B LTR MaLR -2 388 1 2228 105 3 10 chr3 144548123 144548427 -73488731 - AluSx SINE Alu -10 302 1 1888 158 0 10 chr3 144548995 144549292 -73487866 - AluJb SINE Alu -18 294 1 2505 69 0 7 chr3 144549297 144549602 -73487556 - AluSp SINE Alu -10 303 1 200 211 0 0 chr3 144549793 144549831 -73487327 + (CATATA)n Simple_repeat Simple_repeat 3 40 0 237 289 141 16 chr3 144550712 144550833 -73486325 - MIR SINE MIR -103 159 24 297 292 71 18 chr3 144550908 144551076 -73486082 + L1MEd LINE L1 97 280 -5925 970 275 80 24 chr3 144551224 144551675 -73485483 + L1MEd LINE L1 1469 1944 -4452 1151 214 18 0 chr3 144551675 144551895 -73485263 - MER58A DNA MER1_type 0 224 1 2461 96 0 0 chr3 144551947 144552259 -73484899 - AluSq SINE Alu -1 312 1 1491 240 134 16 chr3 144552338 144553164 -73483994 + L1MEd LINE L1 2117 2981 -3234 2171 105 0 7 chr3 144553185 144553500 -73483658 - AluSx SINE Alu 0 313 1 1993 249 110 14 chr3 144553517 144553702 -73483456 + L1MEd LINE L1 3397 3563 -2652 2158 118 10 3 chr3 144553702 144554008 -73483150 + AluSx SINE Alu 1 308 -4 1579 148 107 0 chr3 144554018 144554281 -73482877 + AluJb SINE Alu 11 301 -11 1993 249 110 14 chr3 144554281 144554923 -73482235 + L1MEd LINE L1 3571 4315 -1900 1353 150 87 53 chr3 144554977 144555243 -73481915 + AluJb SINE Alu 1 275 -37 506 163 0 0 chr3 144555356 144555436 -73481722 + L1ME3 LINE L1 5802 5881 -281 198 200 0 0 chr3 144556775 144556820 -73480338 + L2 LINE L2 3264 3308 -5 2294 111 32 16 chr3 144557126 144557495 -73479663 + THE1C LTR MaLR 1 375 0 538 151 36 143 chr3 144557495 144557736 -73479422 - Charlie4 DNA MER1_type -8 1953 1738 559 270 40 0 chr3 144558101 144558253 -73478905 - Charlie4 DNA MER1_type -1705 256 99 28 0 0 0 chr3 144558273 144558301 -73478857 + AT_rich Low_complexity Low_complexity 1 28 0 465 224 10 10 chr3 144558305 144558403 -73478755 - Charlie4 DNA MER1_type -1847 114 17 21 0 0 0 chr3 144558495 144558516 -73478642 + AT_rich Low_complexity Low_complexity 1 21 0 1252 171 14 9 chr3 144559466 144559682 -73477476 - AluJo SINE Alu -95 217 1 2201 116 7 0 chr3 144559691 144559984 -73477174 - AluSq SINE Alu -16 297 3 693 257 68 43 chr3 144560382 144560503 -73476655 - L1MC5 LINE L1 -44 7917 7801 2016 128 26 16 chr3 144560503 144560807 -73476351 - AluSx SINE Alu -5 307 1 693 257 68 43 chr3 144560807 144561082 -73476076 - L1MC5 LINE L1 -160 7801 7511 2357 78 3 26 chr3 144561431 144561737 -73475421 - AluSg SINE Alu -11 299 1 543 213 107 30 chr3 144561800 144561969 -73475189 - MIR SINE MIR 0 262 81 217 250 53 66 chr3 144562095 144562171 -73474987 + MIR3 SINE MIR 117 191 -17 1412 78 0 0 chr3 144562456 144562636 -73474522 + L1PA5 LINE L1 5975 6154 0 795 304 4 29 chr3 144562835 144563115 -73474043 + AluSx SINE Alu 2 274 -38 22 56 0 0 chr3 144563328 144563364 -73473794 + GC_rich Low_complexity Low_complexity 1 36 0 21 71 0 0 chr3 144563424 144563466 -73473692 + GC_rich Low_complexity Low_complexity 1 42 0 3954 165 21 21 chr3 144563577 144564293 -73472865 - Charlie1 DNA MER1_type -492 2269 1554 747 153 0 9 chr3 144564298 144564409 -73472749 - AluJb SINE Alu -178 134 25 1177 176 50 0 chr3 144564425 144564624 -73472534 + ERVL LTR ERVL 1408 1616 -4148 2337 98 0 13 chr3 144564625 144564941 -73472217 + AluSx SINE Alu 1 312 0 416 200 69 46 chr3 144564965 144565095 -73472063 - MLT1H1 LTR MaLR -316 233 58 393 241 7 14 chr3 144565118 144565259 -73471899 + (TA)n Simple_repeat Simple_repeat 2 141 0 29 60 0 0 chr3 144565402 144565452 -73471706 + AT_rich Low_complexity Low_complexity 1 50 0 590 269 120 14 chr3 144565464 144565747 -73471411 - L1ME4a LINE L1 -27 6094 5782 2238 98 10 3 chr3 144565755 144566061 -73471097 - AluSx SINE Alu -4 308 1 23 0 0 0 chr3 144566255 144566278 -73470880 + AT_rich Low_complexity Low_complexity 1 23 0 908 272 79 38 chr3 144566290 144566341 -73470817 - L1MC4a LINE L1 -1920 5888 5841 575 138 0 0 chr3 144566341 144566421 -73470737 + MADE1 DNA Mariner 1 80 0 908 272 79 38 chr3 144566421 144566788 -73470370 - L1MC4a LINE L1 -1967 5841 5453 2282 91 13 10 chr3 144567153 144567462 -73469696 + AluSx SINE Alu 1 310 -2 181 274 29 118 chr3 144567555 144567657 -73469501 + MIR SINE MIR 36 128 -80 870 250 82 8 chr3 144567944 144568188 -73468970 - MIR SINE MIR 0 262 1 633 214 0 0 chr3 144568433 144568545 -73468613 - MER63 DNA MER1_type 0 1062 951 4351 112 27 28 chr3 144568574 144569130 -73468028 + MER50 LTR ERV1 7 563 -171 2258 102 0 3 chr3 144569130 144569434 -73467724 - AluSp SINE Alu -10 303 1 4351 112 27 28 chr3 144569434 144569583 -73467575 + MER50 LTR ERV1 563 711 -23 21 0 0 0 chr3 144569779 144569800 -73467358 + AT_rich Low_complexity Low_complexity 1 21 0 295 159 63 0 chr3 144569850 144569913 -73467245 - MER63 DNA MER1_type -860 70 4 950 216 134 7 chr3 144570437 144570742 -73466416 + MER113 DNA MER1_type? 162 505 -16 825 165 0 0 chr3 144571907 144572028 -73465130 + FLAM_C SINE Alu 5 125 -18 848 269 58 0 chr3 144572084 144572292 -73464866 + MIR SINE MIR 12 231 -31 311 292 144 25 chr3 144573485 144573632 -73463526 - MIR SINE MIR -58 150 31 858 257 18 9 chr3 144574022 144574244 -73462914 - MIR SINE MIR -13 249 26 324 264 62 8 chr3 144574339 144574468 -73462690 - LTR16A1 LTR ERVL -4 453 318 1775 184 37 17 chr3 144575408 144575762 -73461396 - MLT2D LTR ERVL 0 414 54 394 115 0 51 chr3 144575854 144575919 -73461239 - HSMAR2 DNA Mariner -1 1301 1239 6657 20 8 0 chr3 144575919 144576659 -73460499 - L1PA4 LINE L1 0 6155 5410 394 115 0 51 chr3 144576659 144576671 -73460487 - HSMAR2 DNA Mariner -63 1239 1228 15840 98 12 11 chr3 144576671 144578989 -73458169 + HERVH LTR ERV1 970 3290 -4423 3427 107 4 6 chr3 144578979 144579482 -73457676 + HERVH LTR ERV1 3492 3993 -3720 * 3050 143 2 2 chr3 144579484 144580101 -73457057 + HERVH LTR ERV1 4488 5149 -2564 1165 103 17 0 chr3 144580102 144580276 -73456882 + HERVH LTR ERV1 5600 5776 -1937 1994 106 21 3 chr3 144580514 144580797 -73456361 + AluSc SINE Alu 1 288 -21 204 40 0 0 chr3 144580852 144580877 -73456281 + (CAT)n Simple_repeat Simple_repeat 1 25 0 638 267 104 14 chr3 144580892 144581113 -73456045 - MIR SINE MIR -10 252 12 370 208 0 13 chr3 144582167 144582244 -73454914 - MER116 DNA Mariner 0 80 5 201 94 0 0 chr3 144582309 144582341 -73454817 + (TG)n Simple_repeat Simple_repeat 2 33 0 320 227 151 84 chr3 144582755 144582874 -73454284 + L2 LINE L2 3146 3272 0 1041 159 5 64 chr3 144583568 144583788 -73453370 + AluJo SINE Alu 1 207 -105 2327 94 0 3 chr3 144584391 144584690 -73452468 + AluSg SINE Alu 1 298 -12 1075 184 173 14 chr3 144584776 144584970 -73452188 + MER33 DNA MER1_type 3 255 -2330 892 145 15 0 chr3 144584970 144585101 -73452057 - FLAM_C SINE Alu 0 133 1 1075 184 173 14 chr3 144585101 144585184 -73451974 + MER33 DNA MER1_type 255 324 0 2173 134 0 6 chr3 144585304 144585617 -73451541 - AluSx SINE Alu -1 311 1 210 105 0 0 chr3 144588715 144588753 -73448405 + (A)n Simple_repeat Simple_repeat 1 38 0 2129 101 17 7 chr3 144590180 144590478 -73446680 - AluSx SINE Alu -11 301 1 1816 168 0 10 chr3 144590617 144590914 -73446244 - AluJo SINE Alu -16 296 3 1321 194 92 22 chr3 144590956 144591271 -73445887 - MER2 DNA MER2_type -4 340 4 458 197 48 62 chr3 144591408 144591594 -73445564 + L1MC4a LINE L1 5653 5829 -352 252 118 103 0 chr3 144591596 144591664 -73445494 + GA-rich Low_complexity Low_complexity 3 77 0 2361 92 0 10 chr3 144591790 144592096 -73445062 - AluSp SINE Alu -10 303 1 478 190 0 0 chr3 144592563 144592642 -73444516 + FLAM SINE Alu 48 126 -17 35 0 0 0 chr3 144592658 144592693 -73444465 + AT_rich Low_complexity Low_complexity 1 35 0 958 155 18 18 chr3 144593931 144594099 -73443059 + FAM SINE Alu 1 42 -7 495 262 142 16 chr3 144594365 144594548 -73442610 - MIR SINE MIR -56 206 1 2145 126 7 0 chr3 144594574 144594868 -73442290 - AluSx SINE Alu -16 296 1 2184 110 7 7 chr3 144595062 144595363 -73441795 + AluSp SINE Alu 9 309 -4 1047 168 17 6 chr3 144595661 144595840 -73441318 - MER58A DNA MER1_type 0 224 44 1026 214 107 48 chr3 144595868 144596204 -73440954 + MER20B DNA MER1_type 1 356 -427 598 218 95 53 chr3 144596235 144596520 -73440638 + MER20B DNA MER1_type 470 766 -17 276 286 27 36 chr3 144597631 144597743 -73439415 + L2 LINE L2 3192 3302 -11 204 158 0 0 chr3 144598350 144598388 -73438770 + GA-rich Low_complexity Low_complexity 1 38 0 276 206 140 22 chr3 144598841 144598855 -73438303 - L1P4 LINE L1 -318 5847 5834 689 241 135 64 chr3 144598855 144599045 -73438113 - L1MC4a LINE L1 -788 5358 5183 512 252 0 50 chr3 144599045 144599184 -73437974 + FLAM_A SINE Alu 1 132 -1 689 241 135 64 chr3 144599184 144599402 -73437756 - L1MC4a LINE L1 -963 5183 5371 2240 91 0 3 chr3 144599402 144599688 -73437470 - AluSg SINE Alu -25 285 1 689 241 135 64 chr3 144599688 144599789 -73437369 - L1MC4a LINE L1 -774 5372 5280 1684 196 3 0 chr3 144599904 144600189 -73436969 - AluJo SINE Alu -15 297 12 778 194 81 31 chr3 144600204 144600364 -73436794 - AluSg/x SINE Alu -16 294 127 1876 166 20 3 chr3 144600525 144600827 -73436331 + AluSq SINE Alu 5 311 -2 300 196 0 0 chr3 144600827 144600878 -73436280 + MSTA LTR MaLR 378 428 0 1406 259 84 25 chr3 144601252 144601476 -73435682 + L2 LINE L2 1901 2110 -1204 1551 217 4 4 chr3 144601476 144601782 -73435376 + AluJb SINE Alu 1 306 0 1406 259 84 25 chr3 144601782 144602076 -73435082 + L2 LINE L2 2110 2452 -862 448 288 126 56 chr3 144602126 144602194 -73434964 + HAL1b LINE L1 284 346 -1002 2288 116 0 22 chr3 144602194 144602513 -73434645 + AluSx SINE Alu 1 312 0 448 288 126 56 chr3 144602513 144603031 -73434127 + HAL1b LINE L1 346 911 -437 853 189 39 7 chr3 144603063 144603216 -73433942 - AluJb SINE Alu -153 159 2 1767 130 31 38 chr3 144603230 144603523 -73433635 - AluJo SINE Alu -21 291 1 1379 258 97 29 chr3 144603585 144604132 -73433026 + L1ME3A LINE L1 5472 6055 -115 22 35 0 0 chr3 144604206 144604235 -73432923 + AT_rich Low_complexity Low_complexity 1 29 0 241 150 12 163 chr3 144604416 144604496 -73432662 - HsTC2 DNA Tc2 -27 1871 1804 290 305 154 4 chr3 144604642 144604801 -73432357 - MIR3 SINE MIR -11 197 34 21 0 0 0 chr3 144605067 144605088 -73432070 + AT_rich Low_complexity Low_complexity 1 21 0 259 353 73 20 chr3 144605492 144605642 -73431516 - MIR SINE MIR -71 191 34 247 171 0 0 chr3 144606236 144606277 -73430881 - Alu SINE Alu -54 79 39 352 340 100 42 chr3 144606756 144607006 -73430152 - L2 LINE L2 -7 3306 3025 4809 52 23 9 chr3 144607006 144607581 -73429577 + L1PA6 LINE L1 5572 6154 0 352 340 100 42 chr3 144607581 144607710 -73429448 - L2 LINE L2 -288 3025 2905 2002 134 7 0 chr3 144608388 144608672 -73428486 - AluJb SINE Alu -26 286 1 21 36 0 0 chr3 144608759 144608787 -73428371 + AT_rich Low_complexity Low_complexity 1 28 0 1510 203 45 3 chr3 144609329 144609619 -73427539 - AluJb SINE Alu -10 302 1 293 242 84 68 chr3 144609768 144609958 -73427200 - L1ME3A LINE L1 -5 6165 5973 1735 155 24 24 chr3 144609964 144610255 -73426903 - AluJo SINE Alu -21 291 1 1729 228 51 50 chr3 144610338 144610983 -73426175 - L1MC5 LINE L1 -438 7523 6878 315 0 0 0 chr3 144611004 144611043 -73426115 - HY3 scRNA scRNA -1 100 62 203 161 0 0 chr3 144611505 144611536 -73425622 + (CATATA)n Simple_repeat Simple_repeat 3 33 0 355 161 0 0 chr3 144612757 144612813 -73424345 + MER58 DNA MER1_type 2357 2412 -8 731 217 90 38 chr3 144612871 144613083 -73424075 - MIR SINE MIR -38 224 2 2320 91 3 0 chr3 144613833 144614129 -73423029 + AluSg SINE Alu 1 297 -13 1963 160 0 0 chr3 144614335 144614635 -73422523 + AluSx SINE Alu 1 300 -12 792 299 131 42 chr3 144614772 144615465 -73421693 + L1MEd LINE L1 2 756 -5363 596 158 175 26 chr3 144615542 144615656 -73421502 + AluSg SINE Alu 2 132 -178 823 240 147 45 chr3 144615665 144616223 -73420935 + L1MEd LINE L1 889 1551 -4759 2195 108 3 3 chr3 144616482 144616778 -73420380 + AluSp SINE Alu 1 296 -17 202 264 153 0 chr3 144618382 144618454 -73418704 + MIR SINE MIR 92 174 -88 1951 96 11 14 chr3 144618925 144619205 -73417953 - AluSq SINE Alu -34 279 1 283 263 217 88 chr3 144619427 144619644 -73417514 + MIR SINE MIR 12 256 -6 1217 169 28 19 chr3 144619653 144619866 -73417292 + AluJo SINE Alu 87 301 -11 2276 96 0 13 chr3 144621345 144621647 -73415511 - AluSx SINE Alu -14 298 1 21 0 0 0 chr3 144622620 144622641 -73414517 + AT_rich Low_complexity Low_complexity 1 21 0 1876 133 18 0 chr3 144622643 144622951 -73414207 + AluSx SINE Alu 1 312 0 384 304 24 0 chr3 144623823 144623948 -73413210 + L2 LINE L2 3180 3307 -6 25 0 0 0 chr3 144624741 144624766 -73412392 + AT_rich Low_complexity Low_complexity 1 25 0 201 215 31 0 chr3 144624843 144624908 -73412250 + (TA)n Simple_repeat Simple_repeat 2 68 0 989 167 13 0 chr3 144624910 144625060 -73412098 + AluJb SINE Alu 134 285 -27 779 142 0 0 chr3 144625097 144625203 -73411955 - AluSg/x SINE Alu -13 297 192 2167 118 0 10 chr3 144625896 144626210 -73410948 + AluSx SINE Alu 1 311 -1 1598 188 7 17 chr3 144626249 144626547 -73410611 + AluSx SINE Alu 15 309 -3 1079 311 38 13 chr3 144626931 144627445 -73409713 + L2 LINE L2 2560 3086 -227 846 256 127 42 chr3 144627607 144628186 -73408972 + L2 LINE L2 2690 3312 -1 192 252 296 26 chr3 144628226 144628341 -73408817 + MER5A DNA MER1_type 41 186 -3 375 336 80 0 chr3 144629991 144630128 -73407030 - MIR SINE MIR -83 179 32 29 47 0 0 chr3 144630442 144630485 -73406673 + AT_rich Low_complexity Low_complexity 1 43 0 2060 148 198 7 chr3 144630672 144631076 -73406082 + MER31A LTR ERV1 1 481 -4 297 264 107 38 chr3 144631255 144631414 -73405744 - MIR SINE MIR 0 262 93 805 222 72 0 chr3 144631737 144631904 -73405254 + MER5A DNA MER1_type 1 179 -10 1040 221 70 55 chr3 144631939 144632040 -73405118 + MER2 DNA MER2_type 11 109 -236 2106 112 10 3 chr3 144632040 144632336 -73404822 - AluSg SINE Alu -12 298 1 1040 221 70 55 chr3 144632336 144632564 -73404594 + MER2 DNA MER2_type 109 345 0 619 140 28 47 chr3 144632642 144632749 -73404409 + U6 snRNA snRNA 1 105 -2 781 158 0 17 chr3 144632749 144632869 -73404289 + FLAM_C SINE Alu 2 119 -14 2077 163 0 3 chr3 144632901 144633214 -73403944 + AluJb SINE Alu 1 312 0 2217 85 37 3 chr3 144633378 144633673 -73403485 + AluSp SINE Alu 1 305 -8 21 0 0 0 chr3 144633742 144633763 -73403395 + AT_rich Low_complexity Low_complexity 1 21 0 1744 260 51 48 chr3 144633997 144634110 -73403048 + L1ME3A LINE L1 2978 3089 -3057 1900 151 6 28 chr3 144634110 144634428 -73402730 + AluSx SINE Alu 1 311 -1 1744 260 51 48 chr3 144634428 144635171 -73401987 + L1ME3A LINE L1 3089 3837 -2309 822 191 6 13 chr3 144635172 144635329 -73401829 + AluJo SINE Alu 121 276 -36 339 130 0 0 chr3 144635336 144635390 -73401768 + (GGGAA)n Simple_repeat Simple_repeat 5 58 0 200 105 18 53 chr3 144635397 144635454 -73401704 + (GAAAA)n Simple_repeat Simple_repeat 2 56 0 489 240 39 53 chr3 144635458 144635666 -73401492 + L1ME3A LINE L1 3861 4065 -2081 285 273 136 0 chr3 144635693 144635803 -73401355 + L1ME LINE L1 5574 5698 -472 * 643 258 118 9 chr3 144635800 144636029 -73401129 + L1ME3A LINE L1 4119 4372 -1774 1378 226 129 21 chr3 144636031 144636456 -73400702 + L1ME3A LINE L1 5695 6165 -5 977 161 37 82 chr3 144637473 144637573 -73399585 + MER58B DNA MER1_type 10 113 -2307 2285 92 7 0 chr3 144637573 144637879 -73399279 + AluSx SINE Alu 1 308 -4 977 161 37 82 chr3 144637879 144638021 -73399137 + MER58B DNA MER1_type 113 241 -2179 2269 170 41 10 chr3 144638035 144638453 -73398705 - MER65C LTR ERV1 -30 431 1 352 172 204 21 chr3 144638453 144638538 -73398620 + MER58B DNA MER1_type 240 341 0 2121 90 0 22 chr3 144639969 144640280 -73396878 + AluSg SINE Alu 1 304 -6 1150 160 0 0 chr3 144640297 144640472 -73396686 - AluJ SINE Alu -7 305 131 7627 53 4 0 chr3 144640481 144641459 -73395699 - L1PA7 LINE L1 -2 6152 5174 2210 108 0 0 chr3 144641470 144641794 -73395364 - AluSg SINE Alu 0 324 1 855 172 0 0 chr3 144641809 144641943 -73395215 - AluJ SINE Alu -176 136 3 2586 201 100 70 chr3 144641956 144642779 -73394379 - L1ME2 LINE L1 -1 6163 5317 1719 160 7 10 chr3 144642820 144643113 -73394045 - AluJo SINE Alu 0 312 21 210 71 0 0 chr3 144643148 144643176 -73393982 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 195 211 275 37 chr3 144643532 144643641 -73393517 + MIR SINE MIR 128 262 0 7944 113 1 0 chr3 144643849 144644950 -73392208 + L1P LINE L1 5 1106 -5040 22 56 0 0 chr3 144645351 144645387 -73391771 + GC_rich Low_complexity Low_complexity 1 36 0 318 279 61 106 chr3 144645556 144645868 -73391290 - L1M2 LINE L1 -5715 1134 837 277 208 174 79 chr3 144646909 144647087 -73390071 - L1ME3A LINE L1 -8 6162 5968 2328 96 0 3 chr3 144648254 144648557 -73388601 - AluSg SINE Alu -8 302 1 2307 82 16 13 chr3 144648768 144649071 -73388087 - AluSp SINE Alu -9 304 1 1434 195 87 14 chr3 144649406 144649683 -73387475 - AluJo SINE Alu -5 297 1 361 136 34 0 chr3 144650115 144650174 -73386984 - AluJ/FLAM SINE Alu -241 61 1 25 51 0 0 chr3 144650283 144650322 -73386836 + AT_rich Low_complexity Low_complexity 1 39 0 1707 138 28 31 chr3 144650435 144650724 -73386434 + AluJo SINE Alu 1 288 -24 25 31 0 0 chr3 144650724 144650756 -73386402 + AT_rich Low_complexity Low_complexity 1 32 0 622 262 28 0 chr3 144650892 144651033 -73386125 - MIR SINE MIR -110 152 8 1930 132 20 3 chr3 144651490 144651786 -73385372 - AluSx SINE Alu -11 301 1 1924 139 10 0 chr3 144652896 144653197 -73383961 - AluSx SINE Alu -8 304 1 955 226 39 17 chr3 144654052 144654282 -73382876 + MER106A DNA MER1_type 1 235 -1 1471 168 73 14 chr3 144654389 144654675 -73382483 - AluJo SINE Alu -9 303 1 617 96 24 0 chr3 144654733 144654816 -73382342 - AluS SINE Alu -228 85 1 2291 103 0 7 chr3 144654822 144655132 -73382026 - AluSx SINE Alu -4 308 1 2256 103 0 7 chr3 144655429 144655731 -73381427 - AluSx SINE Alu -12 300 1 22 0 0 0 chr3 144656569 144656591 -73380567 + AT_rich Low_complexity Low_complexity 1 22 0 2345 76 14 0 chr3 144659710 144660000 -73377158 - AluSg SINE Alu -16 294 1 1200 146 94 38 chr3 144660577 144660844 -73376314 - AluJo SINE Alu -30 282 1 3067 189 93 22 chr3 144660844 144661038 -73376120 - L1MB7 LINE L1 -43 6141 5962 2255 93 13 10 chr3 144661038 144661349 -73375809 - AluSx SINE Alu 0 312 1 3067 189 93 22 chr3 144661349 144662298 -73374860 - L1MB7 LINE L1 -222 5962 4912 1597 159 52 11 chr3 144662330 144662609 -73374549 - AluJo SINE Alu -25 287 6 782 159 23 0 chr3 144663061 144663193 -73373965 - AluSg/x SINE Alu -18 294 160 507 229 17 8 chr3 144663817 144663935 -73373223 - MIR SINE MIR 0 262 144 751 289 186 31 chr3 144663961 144664417 -73372741 + MLT1G1 LTR MaLR 28 554 -41 191 250 187 56 chr3 144664446 144664572 -73372586 - MIR SINE MIR -62 146 7 278 300 75 33 chr3 144664579 144664699 -73372459 + L2 LINE L2 3171 3295 -18 280 284 0 59 chr3 144664723 144664825 -73372333 - MIR SINE MIR -57 205 110 42 20 0 0 chr3 144665137 144665186 -73371972 + AT_rich Low_complexity Low_complexity 1 49 0 1090 223 133 70 chr3 144665233 144665663 -73371495 - LTR16A1 LTR ERVL 0 457 1 2088 104 7 7 chr3 144666099 144666406 -73370752 - AluSq SINE Alu -6 307 1 1146 301 105 15 chr3 144666421 144666880 -73370278 - L2 LINE L2 -957 2357 1858 246 62 0 0 chr3 144667344 144667376 -73369782 + (TA)n Simple_repeat Simple_repeat 2 33 0 418 271 84 94 chr3 144667520 144667723 -73369435 - MIR SINE MIR -1 261 61 644 296 73 55 chr3 144667853 144668289 -73368869 + L2 LINE L2 2406 2849 -465 907 192 33 22 chr3 144668583 144668765 -73368393 - MER5A DNA MER1_type -4 185 2 1759 154 71 12 chr3 144668776 144669101 -73368057 - MER2 DNA MER2_type 0 344 1 2022 137 0 0 chr3 144669387 144669687 -73367471 + AluSx SINE Alu 1 300 -12 504 0 0 0 chr3 144669819 144669875 -73367283 + (TA)n Simple_repeat Simple_repeat 1 56 0 191 250 187 56 chr3 144670126 144670252 -73366906 - MIR SINE MIR -62 146 7 283 298 74 41 chr3 144670259 144670380 -73366778 + L2 LINE L2 3171 3295 -18 260 294 0 59 chr3 144670404 144670506 -73366652 - MIR SINE MIR -57 205 110 42 20 0 0 chr3 144670818 144670867 -73366291 + AT_rich Low_complexity Low_complexity 1 49 0 1090 223 133 70 chr3 144670914 144671344 -73365814 - LTR16A1 LTR ERVL 0 457 1 2121 95 27 3 chr3 144671780 144672076 -73365082 - AluSx SINE Alu -7 305 3 700 122 0 0 chr3 144672178 144672276 -73364882 - AluSg/x SINE Alu -9 300 203 922 246 23 5 chr3 144673195 144673415 -73363743 + MER58A DNA MER1_type 1 224 0 359 309 100 38 chr3 144673583 144673646 -73363512 - L1ME LINE L1 -392 5729 5671 2289 83 3 0 chr3 144673646 144673948 -73363210 - AluY SINE Alu -8 303 1 359 309 100 38 chr3 144673948 144674204 -73362954 - L1ME LINE L1 -450 5671 5390 702 152 18 23 chr3 144674670 144674841 -73362317 + CT-rich Low_complexity Low_complexity 3 172 0 1845 123 10 37 chr3 144674880 144675180 -73361978 - AluJb SINE Alu -19 293 2 315 0 0 0 chr3 144675242 144675277 -73361881 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 539 40 13 0 chr3 144675281 144675356 -73361802 + L1PA3 LINE L1 6078 6153 -2 280 334 172 22 chr3 144675410 144675724 -73361434 + L3b LINE CR1 1219 1579 -4 983 175 0 24 chr3 144676938 144677104 -73360054 + FAM SINE Alu 4 165 -10 1692 178 98 26 chr3 144677127 144677515 -73359643 - MER21B LTR ERV1 -53 810 395 3470 100 38 13 chr3 144677526 144678058 -73359100 - Tigger3b DNA MER2_type -535 696 152 752 241 117 36 chr3 144678056 144678444 -73358714 - MLT1E1 LTR MaLR -126 528 3 * 1804 161 3 16 chr3 144679229 144679533 -73357625 + AluJo SINE Alu 4 303 -9 283 200 129 35 chr3 144679534 144679619 -73357539 + MER3 DNA MER1_type 117 209 0 974 287 33 45 chr3 144680320 144680389 -73356769 - L1ME4a LINE L1 -266 5855 5787 1227 207 9 0 chr3 144680389 144680611 -73356547 + MER58A DNA MER1_type 1 224 0 974 287 33 45 chr3 144680611 144680949 -73356209 - L1ME4a LINE L1 -334 5787 5462 2144 107 0 7 chr3 144681173 144681483 -73355675 + AluSx SINE Alu 1 308 -4 1660 173 10 23 chr3 144681819 144682125 -73355033 + AluJo SINE Alu 1 302 -10 256 190 35 35 chr3 144682661 144682719 -73354439 + L2 LINE L2 3205 3262 -10 217 330 51 42 chr3 144682701 144682819 -73354339 - L2 LINE L2 -9 3263 3145 * 286 160 160 0 chr3 144683299 144683374 -73353784 - LTR33 LTR ERVL -2 519 433 275 338 105 0 chr3 144684046 144684179 -73352979 + MIR SINE MIR 106 252 -10 18892 95 9 12 chr3 144684349 144684805 -73352353 - L1ME1 LINE L1 -5 6161 5705 1715 178 3 7 chr3 144684805 144685114 -73352044 + AluSx SINE Alu 1 308 -4 18892 95 9 12 chr3 144685114 144688034 -73349124 - L1ME1 LINE L1 -461 5705 2867 723 250 121 38 chr3 144688181 144688445 -73348713 + LTR16C LTR ERVL 206 491 0 515 247 80 33 chr3 144689114 144689264 -73347894 + MIR3 SINE MIR 17 173 -35 566 237 158 13 chr3 144689675 144689827 -73347331 - MER5B DNA MER1_type -3 175 2 603 311 58 37 chr3 144690043 144690249 -73346909 - L1ME4a LINE L1 0 6121 5904 1144 242 5 0 chr3 144690249 144690472 -73346686 + MER58A DNA MER1_type 1 224 0 603 311 58 37 chr3 144690472 144690590 -73346568 - L1ME4a LINE L1 -217 5904 5790 1785 40 11 43 chr3 144690742 144691019 -73346139 - AluYa5 SINE Alu -39 272 5 8509 74 11 31 chr3 144691020 144692259 -73344899 - L1P LINE L1 -3300 2846 1633 633 223 54 12 chr3 144692560 144692726 -73344432 - MER5B DNA MER1_type -4 174 2 889 183 16 27 chr3 144692736 144692922 -73344236 + MER5A DNA MER1_type 2 185 -4 280 189 176 0 chr3 144693633 144693707 -73343451 + MER3 DNA MER1_type 2 88 -121 657 0 0 0 chr3 144693899 144693972 -73343186 + (TA)n Simple_repeat Simple_repeat 1 73 0 280 318 26 32 chr3 144694129 144694398 -73342760 - AluJb SINE Alu -90 212 7 580 96 43 9 chr3 144694732 144694847 -73342311 + CT-rich Low_complexity Low_complexity 2 120 0 2225 93 6 6 chr3 144694862 144695175 -73341983 - AluSp SINE Alu 0 313 1 4772 38 5 0 chr3 144695211 144695771 -73341387 + L1PA5 LINE L1 5554 6116 -38 891 205 0 0 chr3 144695947 144696113 -73341045 - FRAM SINE Alu 0 166 1 484 167 0 0 chr3 144696138 144696210 -73340948 - AluS SINE Alu -240 73 2 6827 118 28 14 chr3 144696211 144697254 -73339904 + HSMAR2 DNA Mariner 54 1110 -192 201 186 0 114 chr3 144699072 144699142 -73338016 + L2 LINE L2 3180 3241 -31 226 234 0 0 chr3 144699235 144699282 -73337876 + L2 LINE L2 3261 3307 -6 1927 131 6 6 chr3 144699522 144699834 -73337324 + AluSx SINE Alu 1 312 0 241 328 127 4 chr3 144699867 144699996 -73337162 - MIR SINE MIR -61 147 29 1767 88 20 81 chr3 144700088 144700383 -73336775 + AluSg SINE Alu 1 277 -33 21 0 0 0 chr3 144700384 144700405 -73336753 + GC_rich Low_complexity Low_complexity 1 21 0 234 164 0 55 chr3 144700869 144700924 -73336234 + C-rich Low_complexity Low_complexity 1 52 0 652 333 123 4 chr3 144701022 144701250 -73335908 - MIR SINE MIR -7 255 1 262 165 25 13 chr3 144701267 144701346 -73335812 + CT-rich Low_complexity Low_complexity 3 82 0 204 319 74 22 chr3 144701919 144702054 -73335104 - MIR3 SINE MIR -34 174 33 503 198 0 0 chr3 144702141 144702227 -73334931 - MIR3 SINE MIR -54 154 69 2317 83 0 0 chr3 144702329 144702629 -73334529 - AluSc SINE Alu -9 300 1 2050 189 78 11 chr3 144702786 144703224 -73333934 + MLT1C LTR MaLR 1 467 0 355 333 33 0 chr3 144703263 144703383 -73333775 - L2 LINE L2 0 3313 3190 329 280 42 25 chr3 144703382 144703500 -73333658 - MIR SINE MIR -56 206 87 * 1563 258 76 22 chr3 144703827 144704365 -73332793 + MER90 LTR ERV1 1 567 -8 227 61 0 30 chr3 144705098 144705131 -73332027 + MIR SINE MIR 113 144 -118 2114 165 18 13 chr3 144705131 144705519 -73331639 + MLT1B LTR MaLR 1 390 0 232 163 23 0 chr3 144705737 144705780 -73331378 + MER90 LTR ERV1 569 612 -2 432 260 3 63 chr3 144706261 144706497 -73330661 + GA-rich Low_complexity Low_complexity 1 221 0 272 279 13 44 chr3 144706457 144706615 -73330543 + G-rich Low_complexity Low_complexity 4 156 0 * 442 304 14 17 chr3 144706556 144706801 -73330357 + GA-rich Low_complexity Low_complexity 1 244 0 366 266 23 32 chr3 144706836 144707154 -73330004 + G-rich Low_complexity Low_complexity 1 315 0 * 399 237 35 23 chr3 144707062 144707235 -73329923 + GA-rich Low_complexity Low_complexity 2 176 0 367 290 17 20 chr3 144707261 144707591 -73329567 + GA-rich Low_complexity Low_complexity 1 329 0 * 374 223 16 65 chr3 144707486 144707670 -73329488 + G-rich Low_complexity Low_complexity 5 179 0 406 250 23 28 chr3 144707824 144708000 -73329158 + GA-rich Low_complexity Low_complexity 3 177 0 266 280 51 13 chr3 144707924 144708081 -73329077 + (AGTAG)n Simple_repeat Simple_repeat 4 166 0 * 305 308 23 10 chr3 144708073 144708311 -73328847 + GA-rich Low_complexity Low_complexity 1 241 0 423 208 10 78 chr3 144708329 144708521 -73328637 + G-rich Low_complexity Low_complexity 1 179 0 181 250 45 0 chr3 144708882 144708926 -73328232 - L2 LINE L2 -2094 1220 1175 285 230 162 14 chr3 144710179 144710253 -73326905 - MIR SINE MIR -21 241 157 1196 238 50 46 chr3 144710268 144710811 -73326347 - L1MC5 LINE L1 -45 7916 7372 1201 193 47 66 chr3 144710929 144711417 -73325741 - L1MC5 LINE L1 -577 7384 6906 1152 263 53 45 chr3 144712806 144713289 -73323869 - L1MC5 LINE L1 -910 6898 6408 270 0 0 0 chr3 144713289 144713319 -73323839 + (CA)n Simple_repeat Simple_repeat 2 31 0 1152 263 53 45 chr3 144713319 144713675 -73323483 - L1MC5 LINE L1 -1400 6408 6056 * 1728 231 97 54 chr3 144713659 144714413 -73322745 - L1MC4a LINE L1 -1767 6041 5256 818 324 43 34 chr3 144714433 144715309 -73321849 - L1MC4a LINE L1 -913 5233 4329 684 212 8 0 chr3 144715313 144715445 -73321713 - FLAM_A SINE Alu 0 133 1 948 183 6 6 chr3 144715449 144715618 -73321540 - AluJb SINE Alu -7 305 137 400 300 188 21 chr3 144715624 144715882 -73321276 - L1MC4a LINE L1 -1821 4325 4026 413 248 64 35 chr3 144715890 144716031 -73321127 - MIR SINE MIR -98 164 20 2184 103 26 26 chr3 144716287 144716597 -73320561 + AluSx SINE Alu 1 310 -2 1187 235 77 12 chr3 144717756 144718153 -73319005 - MER45C DNA AcHobo -1 952 473 317 222 161 0 chr3 144718234 144718315 -73318843 - MER45C DNA AcHobo -727 226 133 646 225 0 35 chr3 144718315 144718457 -73318701 + AluJo SINE Alu 118 254 -58 2360 107 0 7 chr3 144719605 144719914 -73317244 + AluSx SINE Alu 1 307 -5 340 238 13 0 chr3 144720188 144720277 -73316881 - MIR SINE MIR -63 145 65 1136 135 10 30 chr3 144721085 144721285 -73315873 - MER3 DNA MER1_type -5 204 9 750 164 79 0 chr3 144721283 144721460 -73315698 + MER3 DNA MER1_type 2431 2621 0 * 408 290 94 54 chr3 144721612 144721836 -73315322 + MIR SINE MIR 30 262 0 257 179 82 0 chr3 144722807 144722871 -73314287 - MIR3 SINE MIR -47 161 100 268 246 0 14 chr3 144723814 144723883 -73313275 - MIR SINE MIR -86 122 55 21 0 0 0 chr3 144724889 144724910 -73312248 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr3 144726485 144726524 -73310634 + AT_rich Low_complexity Low_complexity 1 39 0 217 171 73 0 chr3 144728056 144728138 -73309020 + GA-rich Low_complexity Low_complexity 5 92 0 212 299 15 0 chr3 144728985 144729052 -73308106 - L2 LINE L2 -15 3298 3231 1422 289 147 10 chr3 144729061 144730089 -73307069 - L2 LINE L2 -1 3312 2070 2269 112 0 28 chr3 144730089 144730410 -73306748 + AluSx SINE Alu 1 312 0 1422 289 147 10 chr3 144730410 144730617 -73306541 - L2 LINE L2 -1243 2070 1893 658 293 33 66 chr3 144730720 144731162 -73305996 - L2 LINE L2 -191 3081 2647 315 291 25 0 chr3 144731551 144731630 -73305528 + MIR SINE MIR 20 100 -162 195 256 0 0 chr3 144731917 144731956 -73305202 + L2 LINE L2 3222 3260 -12 383 257 299 7 chr3 144731988 144732132 -73305026 - MER5A DNA MER1_type 0 189 4 198 0 0 0 chr3 144732613 144732635 -73304523 + (CAT)n Simple_repeat Simple_repeat 2 23 0 561 278 49 0 chr3 144732649 144732811 -73304347 - MIR SINE MIR -10 252 83 2319 98 6 19 chr3 144732839 144733154 -73304004 - AluSx SINE Alu -1 311 1 182 289 48 36 chr3 144733374 144733457 -73303701 - MIR SINE MIR -84 124 41 413 255 35 14 chr3 144734145 144734286 -73302872 - MIR3 SINE MIR -50 158 15 285 269 45 21 chr3 144734701 144734877 -73302281 + MIR SINE MIR 15 249 -13 332 281 62 39 chr3 144734893 144735021 -73302137 - MIR SINE MIR -55 153 23 347 279 68 3 chr3 144735225 144735377 -73301781 + MIR SINE MIR 47 256 -6 425 310 117 14 chr3 144735552 144735765 -73301393 - MIR SINE MIR -27 235 1 1209 254 71 3 chr3 144736389 144736700 -73300458 + LTR16B LTR ERVL 133 464 0 251 319 76 17 chr3 144736712 144736831 -73300327 - MIR SINE MIR -118 144 19 212 360 13 0 chr3 144738826 144738901 -73298257 + L3 LINE CR1 588 663 -914 241 286 0 0 chr3 144739073 144739122 -73298036 + L2 LINE L2 3205 3253 -19 251 229 73 73 chr3 144739144 144739240 -73297918 + MIR SINE MIR 54 149 -59 375 337 126 47 chr3 144739654 144740435 -73296723 + L3 LINE CR1 669 1510 -67 219 218 23 46 chr3 144740813 144740900 -73296258 + GA-rich Low_complexity Low_complexity 5 89 0 476 322 35 25 chr3 144740993 144741195 -73295963 + MIR3 SINE MIR 3 206 -2 22 0 0 0 chr3 144743727 144743749 -73293409 + AT_rich Low_complexity Low_complexity 1 22 0 2018 120 3 109 chr3 144744461 144744837 -73292321 - MER1B DNA MER1_type -1 336 1 216 305 107 53 chr3 144744938 144745069 -73292089 - MIR SINE MIR -114 148 11 1976 151 46 49 chr3 144745288 144745679 -73291479 + MLT1B LTR MaLR 1 390 0 212 302 91 87 chr3 144746240 144746538 -73290620 - L3b LINE CR1 -76 1507 1209 465 288 53 0 chr3 144746621 144746753 -73290405 - MIR3 SINE MIR -18 190 52 1001 266 9 0 chr3 144747393 144747626 -73289532 - MIR SINE MIR -27 235 1 309 257 58 78 chr3 144747954 144748160 -73288998 - L1MCa LINE L1 -4361 2065 1864 877 236 157 43 chr3 144748260 144748753 -73288405 + MLT1G1 LTR MaLR 5 595 0 479 253 51 63 chr3 144748912 144749070 -73288088 - MIR3 SINE MIR -25 183 28 464 0 18 0 chr3 144749091 144749147 -73288011 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 1822 142 67 0 chr3 144749149 144749431 -73287727 - AluJo SINE Alu -11 301 1 230 302 0 30 chr3 144750161 144750238 -73286920 - MIR SINE MIR -100 108 37 275 327 135 13 chr3 144750562 144750718 -73286440 + L2 LINE L2 3096 3270 -2 1834 274 61 18 chr3 144750748 144751318 -73285840 + MLT1G1 LTR MaLR 1 595 0 4958 173 40 2 chr3 144751573 144753291 -73283867 - L1PB2 LINE L1 -247 5904 4125 1598 241 135 22 chr3 144753311 144753933 -73283225 - HsTC2c DNA Tc2 0 729 38 265 214 27 18 chr3 144755976 144756088 -73281070 + (CCCG)n Simple_repeat Simple_repeat 2 114 0 26 50 0 0 chr3 144756125 144756165 -73280993 + GC_rich Low_complexity Low_complexity 1 40 0 1768 266 57 34 chr3 144756448 144757030 -73280128 + MLT1G1 LTR MaLR 1 595 0 459 0 0 0 chr3 144757293 144757344 -73279814 + (CA)n Simple_repeat Simple_repeat 1 51 0 2592 179 43 16 chr3 144757701 144758261 -73278897 + L1MC3 LINE L1 7210 7784 -1 403 261 110 50 chr3 144759065 144759283 -73277875 + MIR SINE MIR 9 239 -23 197 290 32 0 chr3 144759355 144759417 -73277741 + L2 LINE L2 3241 3304 -9 201 133 0 0 chr3 144759566 144759596 -73277562 + (TG)n Simple_repeat Simple_repeat 2 31 0 247 91 0 0 chr3 144760925 144760958 -73276200 - L2 LINE L2 -18 3295 3263 2538 158 33 16 chr3 144760958 144761407 -73275751 + LTR32 LTR ERVL 15 471 0 257 138 86 0 chr3 144761408 144761466 -73275692 - MIR SINE MIR -41 221 159 287 296 212 6 chr3 144762048 144762227 -73274931 - MIR SINE MIR -6 256 41 1153 291 22 45 chr3 144763019 144763463 -73273695 + LTR16A LTR ERVL 17 450 0 21 0 0 0 chr3 144763744 144763765 -73273393 + AT_rich Low_complexity Low_complexity 1 21 0 180 246 58 29 chr3 144763864 144763933 -73273225 - L2 LINE L2 -1 3271 3201 972 239 27 0 chr3 144763992 144764214 -73272944 + MIR SINE MIR 14 241 -21 889 150 212 29 chr3 144764222 144764496 -73272662 + MER33 DNA MER1_type 1 324 0 1912 158 24 3 chr3 144764526 144764824 -73272334 + AluJo SINE Alu 1 304 -8 556 258 86 7 chr3 144764886 144765037 -73272121 + MER5A DNA MER1_type 26 188 -1 848 259 235 22 chr3 144766295 144766785 -73270373 + MLT1G1 LTR MaLR 1 594 -1 572 298 35 6 chr3 144766793 144766964 -73270194 - MIR SINE MIR -67 195 20 2555 200 29 31 chr3 144767870 144768490 -73268668 - L1ME1 LINE L1 -5 6161 5543 420 176 29 29 chr3 144768865 144768967 -73268191 - MER103 DNA DNA -11 155 54 601 218 144 45 chr3 144769072 144769274 -73267884 - MER58A DNA MER1_type -2 222 1 2305 120 0 0 chr3 144769762 144770062 -73267096 + AluSg SINE Alu 1 300 -10 13534 156 33 31 chr3 144770295 144775334 -73261824 - L1PB2 LINE L1 -8 6859 1696 877 103 35 0 chr3 144775334 144775450 -73261708 - FLAM_C SINE Alu -23 120 1 13534 156 33 31 chr3 144775450 144776505 -73260653 - L1PB2 LINE L1 -5171 1696 645 981 154 55 0 chr3 144776510 144776692 -73260466 - L1PB2 LINE L1 -6671 192 1 384 194 39 31 chr3 144776703 144776832 -73260326 - L1MC5 LINE L1 -439 7522 7393 354 308 75 31 chr3 144776899 144777058 -73260100 + MIR SINE MIR 25 190 -72 807 281 4 22 chr3 144777500 144777731 -73259427 + L2 LINE L2 3082 3308 -5 255 256 73 37 chr3 144780153 144780235 -73256923 + MIR SINE MIR 69 153 -109 694 312 46 9 chr3 144780276 144780494 -73256664 - MIR SINE MIR 0 262 37 361 352 28 7 chr3 144781276 144781421 -73255737 - MIR SINE MIR -75 187 40 521 244 57 10 chr3 144782615 144782824 -73254334 + L1MC4 LINE L1 7296 7514 -528 22 0 0 0 chr3 144782867 144782889 -73254269 + AT_rich Low_complexity Low_complexity 1 22 0 2219 74 42 0 chr3 144782889 144783172 -73253986 + AluY SINE Alu 1 295 -16 3200 198 93 25 chr3 144783925 144784732 -73252426 + MER21B LTR ERV1 1 862 -1 222 208 75 0 chr3 144785034 144785087 -73252071 + MER5B DNA MER1_type 2 58 -120 * 340 210 0 0 chr3 144785065 144785127 -73252031 - MER5B DNA MER1_type -116 62 1 273 250 130 65 chr3 144785210 144785318 -73251840 + MIR SINE MIR 31 145 -117 359 284 60 0 chr3 144786087 144786203 -73250955 - HAL1 LINE L1 -1853 654 532 542 251 86 32 chr3 144786233 144786420 -73250738 - HAL1 LINE L1 -2155 352 156 5369 131 41 20 chr3 144786425 144787600 -73249558 - L1MA6 LINE L1 0 6300 5106 293 202 96 0 chr3 144787593 144787697 -73249461 - HAL1 LINE L1 -2339 168 55 * 329 262 47 9 chr3 144787740 144787847 -73249311 + MIR SINE MIR 47 157 -105 237 297 0 0 chr3 144787851 144787925 -73249233 - L1M LINE L1 -744 5426 5353 468 315 52 30 chr3 144788206 144788476 -73248682 + LTR16A LTR ERVL 17 292 -158 643 306 69 80 chr3 144788608 144789160 -73247998 - L1M4 LINE L1 -1145 5001 4456 4623 187 31 22 chr3 144789301 144791142 -73246016 + L1MC2 LINE L1 4069 5922 -422 295 236 205 39 chr3 144791138 144791265 -73245893 - L1ME2 LINE L1 -19 6145 5998 * 225 265 42 90 chr3 144791615 144791804 -73245354 - L1M4 LINE L1 -2183 3963 3784 365 280 89 67 chr3 144792640 144792922 -73244236 - L1M4 LINE L1 -3173 2973 2686 458 148 12 12 chr3 144792939 144793020 -73244138 - Charlie3 DNA MER1_type -8 2702 2622 * 486 228 10 0 chr3 144793019 144793120 -73244038 + MER8 DNA MER2_type 138 239 0 2006 239 131 15 chr3 144793175 144793952 -73243206 - L1MD3 LINE L1 -1803 6192 5326 2875 119 32 34 chr3 144793954 144794483 -73242675 - L1MA5 LINE L1 -4 6296 5769 1594 86 4 12 chr3 144794498 144794741 -73242417 - L1MA2 LINE L1 0 6304 6064 1168 212 13 13 chr3 144794741 144795084 -73242074 - L1MA5 LINE L1 -762 5384 5039 1848 229 49 25 chr3 144795462 144796187 -73240971 - L1MD3 LINE L1 -149 6017 5323 2827 117 31 52 chr3 144796189 144796728 -73240430 - L1MA5 LINE L1 -4 7715 7188 1581 83 8 12 chr3 144796743 144796985 -73240173 - L1MA2 LINE L1 0 6304 6064 21076 153 33 12 chr3 144796985 144803637 -73233521 - L1MA5 LINE L1 -762 6803 3 21 57 0 0 chr3 144803910 144803945 -73233213 + AT_rich Low_complexity Low_complexity 1 35 0 247 183 354 24 chr3 144805172 144805254 -73231904 + MIR3 SINE MIR 98 206 -2 328 348 0 42 chr3 144805268 144805386 -73231772 - MIR SINE MIR -68 140 28 296 327 39 0 chr3 144805776 144805880 -73231278 + MIR3 SINE MIR 94 201 -7 226 86 121 35 chr3 144806058 144806116 -73231042 + MER3 DNA MER1_type 147 209 0 * 241 140 140 0 chr3 144806077 144806134 -73231024 - MER3 DNA MER1_type -117 92 28 225 0 0 0 chr3 144807143 144807168 -73229990 + (TG)n Simple_repeat Simple_repeat 1 25 0 324 269 159 21 chr3 144808174 144808319 -73228839 - L1MC5 LINE L1 -80 7881 7717 22 0 0 0 chr3 144809575 144809597 -73227561 + AT_rich Low_complexity Low_complexity 1 22 0 312 281 52 42 chr3 144812404 144812527 -73224631 - MIR SINE MIR -64 144 5 215 254 36 18 chr3 144812541 144812596 -73224562 - L2 LINE L2 -84 3188 3133 215 306 32 0 chr3 144812749 144812811 -73224347 - MIR SINE MIR -87 121 58 712 225 113 14 chr3 144813170 144813454 -73223704 - L1MC5 LINE L1 -60 7901 7590 184 89 22 22 chr3 144813501 144813546 -73223612 + (TTTTTA)n Simple_repeat Simple_repeat 4 48 0 653 186 0 0 chr3 144813583 144813680 -73223478 - FRAM SINE Alu -82 94 1 232 212 76 0 chr3 144813700 144813766 -73223392 - L1MC5 LINE L1 -385 7576 7506 5800 150 21 14 chr3 144813782 144814254 -73222904 - L1PB2 LINE L1 -7 6144 5677 2104 148 0 0 chr3 144814254 144814557 -73222601 - AluSg SINE Alu -7 303 1 5800 150 21 14 chr3 144814557 144815744 -73221414 - L1PB2 LINE L1 -474 5677 4476 6950 64 0 6 chr3 144815857 144816696 -73220462 + L1PA6 LINE L1 5316 6149 -5 3556 205 24 57 chr3 144816701 144817529 -73219629 + L1ME1 LINE L1 4888 5741 -425 207 0 0 0 chr3 144817529 144817552 -73219606 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3434 24 0 0 chr3 144817552 144817925 -73219233 - L1PA2 LINE L1 -12 6143 5771 3556 205 24 57 chr3 144817925 144817954 -73219204 + L1ME1 LINE L1 5740 5768 -398 1898 172 0 6 chr3 144817954 144818268 -73218890 - AluSx SINE Alu 0 312 1 3556 205 24 57 chr3 144818268 144818724 -73218434 + L1ME1 LINE L1 5768 6161 -5 261 338 105 0 chr3 144818894 144819027 -73218131 - MIR SINE MIR -10 252 106 276 160 160 0 chr3 144819699 144819774 -73217384 + LTR33 LTR ERVL 433 519 -2 2514 64 3 3 chr3 144820348 144820659 -73216499 + AluY SINE Alu 1 311 0 298 340 19 0 chr3 144821030 144821136 -73216022 - MIR SINE MIR -65 143 36 423 0 0 0 chr3 144822031 144822078 -73215080 + (TG)n Simple_repeat Simple_repeat 2 48 0 2103 203 75 39 chr3 144822087 144822624 -73214534 + MER74A LTR ERVL 1 556 -2 255 310 47 16 chr3 144824114 144824243 -73212915 + L1ME LINE L1 5643 5775 -346 592 226 136 50 chr3 144824247 144824468 -73212690 + MIR SINE MIR 2 241 -21 205 250 80 70 chr3 144825446 144825546 -73211612 + MER5A DNA MER1_type 86 186 -3 279 302 181 17 chr3 144827380 144827496 -73209662 + MIR3 SINE MIR 15 149 -59 202 211 26 0 chr3 144829617 144829655 -73207503 + L2 LINE L2 3204 3242 -30 296 267 105 0 chr3 144829656 144829742 -73207416 - L2 LINE L2 -16 3256 3162 210 259 37 133 chr3 144830117 144830252 -73206906 - MIR SINE MIR -66 142 21 362 256 165 38 chr3 144830960 144831093 -73206065 + MER5B DNA MER1_type 29 178 0 23 0 0 0 chr3 144831369 144831392 -73205766 + AT_rich Low_complexity Low_complexity 1 23 0 1851 157 9 28 chr3 144831476 144831794 -73205364 + AluJb SINE Alu 1 312 0 1955 168 0 0 chr3 144832406 144832715 -73204443 - AluSx SINE Alu -3 309 1 915 259 39 36 chr3 144832778 144833110 -73204048 + L2 LINE L2 2977 3309 -4 1907 179 55 13 chr3 144833256 144833635 -73203523 - MER119 DNA MER1_type -105 478 84 374 261 115 34 chr3 144833760 144833994 -73203164 - L1MC5 LINE L1 -1 7960 7708 1941 131 15 0 chr3 144834028 144834302 -73202856 + AluSx SINE Alu 11 288 -24 188 262 0 0 chr3 144834334 144834376 -73202782 + MIR SINE MIR 187 228 -34 1722 178 10 19 chr3 144836417 144836726 -73200432 + AluJo SINE Alu 1 306 -6 186 300 38 50 chr3 144836933 144837013 -73200145 - L2 LINE L2 0 3272 3194 498 229 101 71 chr3 144837117 144837384 -73199774 + L1MC4 LINE L1 7557 7831 -211 30023 96 10 21 chr3 144837408 144840270 -73196888 + L1P LINE L1 11 2809 -3337 2845 16 0 0 chr3 144840270 144840581 -73196577 + AluYa5 SINE Alu 1 311 0 30023 96 10 21 chr3 144840581 144842085 -73195073 + L1P LINE L1 2809 4328 -1818 28 19 0 56 chr3 144842220 144842274 -73194884 + AT_rich Low_complexity Low_complexity 1 51 0 315 279 30 70 chr3 144842434 144842635 -73194523 - L1MC4a LINE L1 -1918 5890 5698 2563 66 0 0 chr3 144843210 144843514 -73193644 - AluY SINE Alu -7 304 1 376 325 8 0 chr3 144843581 144843707 -73193451 - MIR3 SINE MIR -28 180 54 2296 254 55 10 chr3 144844253 144844776 -73192382 + MLT1H LTR MaLR 3 549 0 389 147 496 35 chr3 144846214 144846357 -73190801 - MER3 DNA MER1_type 0 209 1 419 208 0 0 chr3 144847445 144847522 -73189636 + MER3 DNA MER1_type 36 112 -97 373 256 19 25 chr3 144848112 144848272 -73188886 + CT-rich Low_complexity Low_complexity 3 161 0 381 220 22 60 chr3 144848412 144848656 -73188502 + C-rich Low_complexity Low_complexity 1 234 0 257 306 21 14 chr3 144848627 144848771 -73188387 + CT-rich Low_complexity Low_complexity 2 146 0 * 427 225 35 23 chr3 144848837 144849046 -73188112 + CT-rich Low_complexity Low_complexity 1 211 0 366 269 16 39 chr3 144849054 144849236 -73187922 + C-rich Low_complexity Low_complexity 2 179 0 448 293 6 33 chr3 144849252 144849480 -73187678 + CT-rich Low_complexity Low_complexity 1 221 0 321 268 7 42 chr3 144849496 144849638 -73187520 + C-rich Low_complexity Low_complexity 4 140 0 * 467 229 5 60 chr3 144849572 144849915 -73187243 + CT-rich Low_complexity Low_complexity 1 324 0 320 258 22 50 chr3 144849850 144850032 -73187126 + C-rich Low_complexity Low_complexity 4 180 0 * 227 277 0 0 chr3 144850966 144851013 -73186145 - L2 LINE L2 -11 3261 3215 304 123 96 82 chr3 144851811 144851884 -73185274 - MER5A DNA MER1_type -83 106 33 2213 141 11 31 chr3 144851951 144852305 -73184853 + MER7A DNA MER2_type 2 346 0 333 324 89 12 chr3 144852309 144852482 -73184676 - MIR3 SINE MIR -55 153 9 321 284 69 9 chr3 144852937 144853053 -73184105 - MIR SINE MIR -39 223 101 1276 212 136 27 chr3 144853259 144853681 -73183477 - L1MC4 LINE L1 -1 8041 7456 651 171 196 0 chr3 144854459 144854617 -73182541 + MER53 DNA DNA 1 189 0 925 237 95 10 chr3 144854828 144855132 -73182026 + MER46C DNA MER2_type 1 330 -8 1380 173 96 20 chr3 144855173 144855474 -73181684 + MER33 DNA MER1_type 1 324 0 329 322 98 14 chr3 144855477 144855620 -73181538 - MIR3 SINE MIR -39 169 15 376 276 188 16 chr3 144856368 144856560 -73180598 + MIR SINE MIR 8 232 -30 639 257 51 6 chr3 144857530 144857705 -73179453 - MER20B DNA MER1_type -594 189 7 296 264 58 0 chr3 144857713 144857800 -73179358 + MIR3 SINE MIR 101 192 -16 413 298 73 7 chr3 144857929 144858080 -73179078 + MIR3 SINE MIR 44 204 -4 360 0 0 0 chr3 144858172 144858212 -73178946 + (CA)n Simple_repeat Simple_repeat 2 41 0 236 328 0 0 chr3 144858407 144858468 -73178690 + L2 LINE L2 3017 3077 -195 384 40 0 0 chr3 144859640 144859690 -73177468 + (TG)n Simple_repeat Simple_repeat 2 51 0 276 359 72 30 chr3 144859930 144860097 -73177061 + MIR3 SINE MIR 4 177 -31 792 254 22 22 chr3 144860107 144860339 -73176819 - L2 LINE L2 -4 3309 3078 384 250 10 10 chr3 144862066 144862162 -73174996 - MER5A DNA MER1_type -84 105 10 198 294 164 46 chr3 144862177 144862439 -73174719 + L2 LINE L2 2562 2854 -460 2256 207 90 22 chr3 144862463 144862965 -73174193 + MLT1F LTR MaLR 1 536 -6 643 236 64 123 chr3 144863003 144863329 -73173829 + L2 LINE L2 2965 3271 -1 2310 68 0 32 chr3 144863387 144863697 -73173461 - AluY SINE Alu -11 300 1 237 331 30 68 chr3 144863848 144863884 -73173274 - MER5B DNA MER1_type -22 156 120 896 228 35 15 chr3 144863884 144864086 -73173072 - MER6B DNA MER2_type 0 210 5 237 331 30 68 chr3 144864086 144864182 -73172976 - MER5B DNA MER1_type -58 120 29 328 185 37 47 chr3 144865554 144865660 -73171498 + LTR33A LTR ERVL 445 521 -2 209 329 0 14 chr3 144865664 144865737 -73171421 - MIR SINE MIR -62 200 129 943 253 58 55 chr3 144866172 144866464 -73170694 - AluJo SINE Alu -9 293 1 275 274 105 21 chr3 144867693 144867788 -73169370 + L2 LINE L2 3149 3251 -21 25 31 0 0 chr3 144868128 144868160 -73168998 + AT_rich Low_complexity Low_complexity 1 32 0 1260 282 103 26 chr3 144869561 144870328 -73166830 + L2 LINE L2 2479 3312 -1 419 267 55 42 chr3 144870858 144871023 -73166135 + MIR SINE MIR 2 168 -94 2312 145 52 0 chr3 144872137 144872482 -73164676 - MLT1A1 LTR MaLR -2 363 1 266 333 0 9 chr3 144873528 144873639 -73163519 - L1MDa LINE L1 -2415 3714 3605 395 289 119 62 chr3 144873642 144874044 -73163114 - L1MDa LINE L1 -3969 2160 1736 849 303 81 29 chr3 144874216 144874464 -73162694 - L1MDa LINE L1 -4736 1574 1340 2100 132 0 22 chr3 144874464 144874783 -73162375 - AluSx SINE Alu 0 312 1 849 303 81 29 chr3 144874783 144875152 -73162006 - L1MDa LINE L1 -4970 1340 925 1648 253 102 12 chr3 144875225 144875791 -73161367 + MLT1G3 LTR MaLR 1 530 0 683 294 36 90 chr3 144875796 144876207 -73160951 - L1MDa LINE L1 -5296 823 435 766 212 0 0 chr3 144876301 144876433 -73160725 - FLAM_C SINE Alu 0 133 2 384 304 48 68 chr3 144877063 144877270 -73159888 - MIR3 SINE MIR 0 208 6 925 192 6 6 chr3 144877327 144877495 -73159663 + MER2 DNA MER2_type 1 168 -177 528 262 25 4 chr3 144877495 144877626 -73159532 + MER2 DNA MER2_type 1 142 -97 275 188 0 116 chr3 144877698 144877767 -73159391 - MIR3 SINE MIR -40 168 108 378 255 49 10 chr3 144878114 144878216 -73158942 - MER91C DNA MER1_type -34 106 1 298 267 95 19 chr3 144878721 144878826 -73158332 + MLT1J LTR MaLR 86 198 -313 467 275 84 28 chr3 144878888 144879066 -73158092 + MLT1J2 LTR MaLR 263 450 0 216 277 25 101 chr3 144879210 144879329 -73157829 + L2 LINE L2 3203 3312 -1 2808 115 54 35 chr3 144879888 144880313 -73156845 - Tigger2a DNA MER2_type -1 433 1 605 170 0 20 chr3 144880448 144880548 -73156610 + FLAM_A SINE Alu 32 129 -13 2253 127 0 0 chr3 144880718 144881040 -73156118 + L1PA16 LINE L1 5691 6012 -154 511 337 0 28 chr3 144881586 144881764 -73155394 - MIR3 SINE MIR -34 174 2 2905 36 3 0 chr3 144881864 144882193 -73154965 - L1PA4 LINE L1 0 6155 5826 2436 26 6 2 chr3 144882193 144882615 -73154543 + L1P2 LINE L1 5103 5525 -630 2264 110 3 0 chr3 144882622 144882913 -73154245 - AluSx SINE Alu -20 292 1 398 20 20 0 chr3 144883365 144883416 -73153742 + (CA)n Simple_repeat Simple_repeat 2 53 0 264 295 48 29 chr3 144883746 144883851 -73153307 + L2 LINE L2 2724 2830 -484 1142 235 12 21 chr3 144883880 144884385 -73152773 - MLT1F LTR MaLR 0 542 1 220 293 131 9 chr3 144884441 144884588 -73152570 + MIR SINE MIR 31 191 -69 207 0 0 0 chr3 144884664 144884687 -73152471 + (A)n Simple_repeat Simple_repeat 1 23 0 212 340 43 53 chr3 144884749 144884843 -73152315 + L2 LINE L2 3088 3180 -92 433 279 79 0 chr3 144885266 144885406 -73151752 + MLT2C1 LTR ERVL 48 198 -199 * 1457 194 133 90 chr3 144885302 144885822 -73151336 + MLT1E2 LTR MaLR 80 621 -5 560 285 58 32 chr3 144886564 144886789 -73150369 - MIR SINE MIR -4 258 20 226 190 246 44 chr3 144886928 144887043 -73150115 - MIR SINE MIR -13 249 91 5725 84 13 0 chr3 144887267 144888039 -73149119 - L1PA13 LINE L1 -2 6161 5380 261 344 57 8 chr3 144888216 144888338 -73148820 - L2 LINE L2 -19 3294 3167 21 0 0 0 chr3 144889228 144889249 -73147909 + AT_rich Low_complexity Low_complexity 1 21 0 467 254 51 37 chr3 144889606 144889868 -73147290 + L1MC/D LINE L1 5565 5827 -318 226 129 161 16 chr3 144890036 144890098 -73147060 + L1ME4a LINE L1 6049 6119 -2 1670 177 0 17 chr3 144890245 144890533 -73146625 - AluJb SINE Alu -16 296 14 2587 92 47 0 chr3 144890534 144890872 -73146286 + THE1A LTR MaLR 1 354 -1 12633 85 14 2 chr3 144890874 144892435 -73144723 + THE1A-int LTR MaLR 2 1580 0 2766 101 0 0 chr3 144892435 144892790 -73144368 + THE1A LTR MaLR 1 355 0 1797 172 10 7 chr3 144894408 144894704 -73142454 + AluJo SINE Alu 3 299 -13 3631 135 6 17 chr3 144894967 144895502 -73141656 + MER1A DNA MER1_type 1 529 0 239 231 19 0 chr3 144895875 144895927 -73141231 + (CTCA)n Simple_repeat Simple_repeat 1 53 0 6394 94 18 0 chr3 144896523 144897395 -73139763 - L1P LINE L1 -5258 888 1 2461 97 63 26 chr3 144898005 144898356 -73138802 - THE1B LTR MaLR 0 364 1 697 240 142 27 chr3 144898826 144899051 -73138107 + MIR SINE MIR 12 262 0 910 167 14 0 chr3 144899569 144899707 -73137451 + FRAM SINE Alu 7 146 -30 31 0 0 0 chr3 144899757 144899788 -73137370 + AT_rich Low_complexity Low_complexity 1 31 0 235 259 0 70 chr3 144901532 144901645 -73135513 + MER5A DNA MER1_type 63 167 -14 1801 163 89 20 chr3 144901841 144901980 -73135178 + MSTD LTR MaLR 1 129 -267 5158 92 41 0 chr3 144901980 144902641 -73134517 - LTR12 LTR ERV1 0 688 1 1801 163 89 20 chr3 144902641 144902851 -73134307 + MSTD LTR MaLR 129 374 -22 1867 134 19 13 chr3 144902853 144903160 -73133998 + MER49 LTR ERV1 1 309 -614 5069 91 18 151 chr3 144903160 144904712 -73132446 + pTR5 LTR ERV1 744 2606 0 1201 85 62 17 chr3 144904742 144904918 -73132240 - L1PA11 LINE L1 -4 6170 5987 3792 138 35 7 chr3 144904919 144905521 -73131637 + MER49 LTR ERV1 305 923 0 24 32 0 0 chr3 144906047 144906078 -73131080 + AT_rich Low_complexity Low_complexity 1 31 0 248 277 59 33 chr3 144906533 144906711 -73130447 + MIR SINE MIR 19 203 -59 21 36 0 0 chr3 144906846 144906874 -73130284 + AT_rich Low_complexity Low_complexity 1 28 0 2344 107 0 0 chr3 144907664 144907963 -73129195 + AluSg SINE Alu 1 299 -11 21 0 0 0 chr3 144908010 144908031 -73129127 + AT_rich Low_complexity Low_complexity 1 21 0 198 320 206 6 chr3 144908231 144908406 -73128752 - MIR SINE MIR -6 256 47 264 122 0 0 chr3 144908949 144908990 -73128168 + (CA)n Simple_repeat Simple_repeat 2 42 0 720 311 8 23 chr3 144910226 144910483 -73126675 + MLT1I LTR MaLR 157 409 0 187 327 0 0 chr3 144911096 144911148 -73126010 + L2 LINE L2 3203 3254 -18 951 263 100 49 chr3 144912789 144913199 -73123959 + MLT1J2 LTR MaLR 20 450 0 215 205 0 0 chr3 144915344 144915383 -73121775 - MIR SINE MIR 0 262 224 * 881 269 206 31 chr3 144915382 144916001 -73121157 - L2 LINE L2 0 3313 2600 854 257 75 4 chr3 144917095 144917336 -73119822 + MIR SINE MIR 4 261 -1 2393 111 0 0 chr3 144918414 144918721 -73118437 - AluSc SINE Alu -2 307 1 195 250 156 0 chr3 144918841 144918905 -73118253 + MIR SINE MIR 163 236 -26 989 258 48 30 chr3 144919867 144920239 -73116919 - MLT1I LTR MaLR -23 386 8 405 313 49 25 chr3 144920258 144920421 -73116737 - MIR SINE MIR -40 222 56 255 79 0 0 chr3 144920820 144920858 -73116300 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 5110 135 46 3 chr3 144920866 144922031 -73115127 + L1PA14 LINE L1 4949 6156 -5 3491 38 0 5 chr3 144922034 144922459 -73114699 - L1PA4 LINE L1 0 6155 5733 3128 20 0 0 chr3 144922459 144922857 -73114301 + L1P LINE L1 4992 5389 -757 180 111 0 0 chr3 144923578 144923605 -73113553 + (TTCC)n Simple_repeat Simple_repeat 3 29 0 2033 139 0 0 chr3 144923605 144923885 -73113273 - AluSx SINE Alu -32 280 1 432 193 44 35 chr3 144924272 144924386 -73112772 - MIR3 SINE MIR -6 202 88 204 40 0 0 chr3 144924447 144924472 -73112686 + (CA)n Simple_repeat Simple_repeat 2 26 0 2223 104 47 0 chr3 144925285 144925583 -73111575 + AluSx SINE Alu 1 312 0 24 53 0 0 chr3 144927046 144927084 -73110074 + AT_rich Low_complexity Low_complexity 1 38 0 1193 152 25 62 chr3 144928156 144928400 -73108758 + MER46A DNA MER2_type 2 236 0 270 0 0 0 chr3 144930316 144930346 -73106812 + (T)n Simple_repeat Simple_repeat 1 30 0 196 197 34 145 chr3 144930823 144930940 -73106218 + MIR SINE MIR 89 192 -70 456 299 139 65 chr3 144933057 144933395 -73103763 - L2 LINE L2 -1 3271 2909 2910 140 9 36 chr3 144933837 144934532 -73102626 + L1MA9 LINE L1 5097 5774 -538 268 287 22 15 chr3 144934543 144934679 -73102479 + (TATATG)n Simple_repeat Simple_repeat 6 142 0 2366 169 49 6 chr3 144934679 144935189 -73101969 + L1MA9 LINE L1 5776 6307 -5 2029 147 3 6 chr3 144935377 144935690 -73101468 - AluJb SINE Alu 0 312 1 23 0 0 0 chr3 144935926 144935949 -73101209 + AT_rich Low_complexity Low_complexity 1 23 0 1219 205 121 55 chr3 144936059 144936440 -73100718 - L1MD3 LINE L1 -1043 6952 6547 340 227 0 20 chr3 144936483 144936584 -73100574 - L1MC3 LINE L1 -1184 6604 6517 253 256 81 12 chr3 144936706 144936792 -73100366 - MIR SINE MIR -77 185 94 1598 89 0 0 chr3 144936804 144937041 -73100117 + L1P4 LINE L1 5291 5527 -638 2407 97 2 10 chr3 144937044 144937446 -73099712 + L1P LINE L1 2752 3150 -2996 1734 197 8 19 chr3 144937552 144937927 -73099231 + L1M3e LINE L1 2145 2515 -4974 1010 201 43 11 chr3 144937930 144938114 -73099044 + AluJb SINE Alu 84 273 -39 2847 226 76 38 chr3 144938114 144939442 -73097716 + L1M3e LINE L1 2259 3544 -4021 353 200 14 0 chr3 144939546 144939616 -73097542 + MER21B LTR ERV1 19 89 -774 3034 213 62 19 chr3 144939623 144940352 -73096806 + MER21B LTR ERV1 47 806 -57 23 78 0 0 chr3 144940372 144940423 -73096735 + AT_rich Low_complexity Low_complexity 1 51 0 1036 175 0 12 chr3 144940521 144940687 -73096471 + FRAM SINE Alu 1 156 -20 3075 213 49 25 chr3 144940687 144941632 -73095526 + L1M3e LINE L1 3608 4574 -2991 1617 162 94 20 chr3 144942913 144943376 -73093782 + Charlie1 DNA MER1_type 1 2761 0 407 229 29 0 chr3 144943728 144943833 -73093325 - MER104 DNA Tc2 -1 179 72 594 215 139 25 chr3 144944762 144944920 -73092238 + MER5B DNA MER1_type 2 177 -1 687 192 108 0 chr3 144944932 144945099 -73092059 - MER5A DNA MER1_type -3 186 2 322 279 23 47 chr3 144946042 144946171 -73090987 + MIR SINE MIR 68 193 -69 554 208 136 51 chr3 144946960 144946979 -73090179 - MLT1D LTR MaLR 0 505 489 2226 122 7 0 chr3 144946979 144947283 -73089875 - AluSq SINE Alu -7 306 1 554 208 136 51 chr3 144947283 144947638 -73089520 - MLT1D LTR MaLR -16 489 1 21079 70 11 27 chr3 144947792 144950986 -73086172 - L1P LINE L1 -2923 3223 80 899 193 59 35 chr3 144951430 144951632 -73085526 - MER3 DNA MER1_type 0 209 3 263 395 18 0 chr3 144951680 144951789 -73085369 - L2 LINE L2 -13 3300 3190 6480 82 11 1 chr3 144951961 144953455 -73083703 - L1PA7 LINE L1 -14 6140 4642 213 273 158 22 chr3 144953660 144953799 -73083359 - L2 LINE L2 -1429 1885 1728 25 31 0 0 chr3 144954732 144954764 -73082394 + AT_rich Low_complexity Low_complexity 1 32 0 2357 42 0 14 chr3 144954867 144955152 -73082006 - AluY SINE Alu -30 281 1 378 272 99 39 chr3 144955171 144955454 -73081704 - LTR16C LTR ERVL 0 491 192 309 322 70 35 chr3 144956429 144956600 -73080558 - MIR3 SINE MIR 0 208 32 276 277 274 28 chr3 144956616 144956977 -73080181 + L2 LINE L2 2834 3283 -30 1263 204 39 12 chr3 144957103 144957437 -73079721 - Charlie5 DNA MER1_type 0 2617 2275 398 168 42 11 chr3 144957461 144957556 -73079602 - Charlie5 DNA MER1_type -2497 115 18 1859 148 7 7 chr3 144958247 144958525 -73078633 - AluSx SINE Alu -34 278 1 294 242 132 0 chr3 144958803 144958894 -73078264 + MIR3 SINE MIR 62 164 -44 354 254 79 56 chr3 144958910 144959036 -73078122 - MIR3 SINE MIR -31 177 49 181 292 42 28 chr3 144959295 144959367 -73077791 + L3 LINE CR1 1419 1491 -86 561 183 16 40 chr3 144960228 144960354 -73076804 + MER3 DNA MER1_type 47 122 -87 985 132 45 66 chr3 144960363 144960605 -73076553 + MER3 DNA MER1_type 2235 2471 0 23 54 0 0 chr3 144960649 144960686 -73076472 + AT_rich Low_complexity Low_complexity 1 37 0 1307 142 15 0 chr3 144960689 144960894 -73076264 - MER2 DNA MER2_type -137 208 1 614 130 43 80 chr3 144960894 144961056 -73076102 + MER3 DNA MER1_type 2468 2623 0 2161 109 0 39 chr3 144961092 144961403 -73075755 - AluSg SINE Alu -11 299 1 323 227 0 67 chr3 144962682 144962757 -73074401 + MIR SINE MIR 120 189 -73 271 197 127 14 chr3 144962939 144963010 -73074148 - MIR SINE MIR -118 144 66 9552 34 2 2 chr3 144963011 144964213 -73072945 - L1P LINE L1 -1253 4893 3693 4075 17 0 0 chr3 144964216 144964751 -73072407 + L1P LINE L1 4894 5428 -727 27 81 0 0 chr3 144964865 144964927 -73072231 + AT_rich Low_complexity Low_complexity 1 62 0 428 78 16 0 chr3 144966544 144966608 -73070550 + MER4D LTR ERV1 141 205 -667 18235 85 4 7 chr3 144967270 144970932 -73066226 + L1PA7 LINE L1 2559 6205 0 273 173 39 0 chr3 144971209 144971261 -73065897 + MIR SINE MIR 90 143 -119 831 230 65 20 chr3 144971830 144972078 -73065080 + MIR SINE MIR 4 262 0 1032 203 18 53 chr3 144972704 144972931 -73064227 + MER20 DNA MER1_type 1 219 0 38 51 0 0 chr3 144973955 144974014 -73063144 + AT_rich Low_complexity Low_complexity 1 59 0 499 302 39 13 chr3 144974655 144974887 -73062271 + L1M4b LINE L1 11 248 -6611 397 293 34 103 chr3 144974916 144975292 -73061866 + L1M4b LINE L1 688 1015 -5840 457 107 0 0 chr3 144975480 144975555 -73061603 - L1P LINE L1 -841 5305 5231 4254 45 17 6 chr3 144975555 144976083 -73061075 + L1PA7 LINE L1 5618 6154 0 1529 105 26 18 chr3 144976234 144976462 -73060696 + MER30 DNA MER1_type 1 230 0 182 108 54 0 chr3 144980262 144980299 -73056859 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 243 320 40 16 chr3 144981048 144981173 -73055985 + L1MC/D LINE L1 5533 5660 -461 256 269 69 44 chr3 144981197 144981357 -73055801 - MLT1J LTR MaLR 0 511 348 310 220 129 30 chr3 144981883 144982015 -73055143 - LTR16C LTR ERVL -2 489 345 1647 224 42 22 chr3 144982780 144983187 -73053971 - LTR53 LTR ERVL 0 519 105 6731 181 54 38 chr3 144983346 144985000 -73052158 - L1P LINE L1 -4464 1682 2 229 261 78 78 chr3 144985491 144985606 -73051552 - MIR3 SINE MIR -9 199 85 958 172 81 0 chr3 144985663 144985837 -73051321 - MER5A DNA MER1_type 0 189 2 187 337 72 0 chr3 144986525 144986608 -73050550 - MIR SINE MIR -71 191 103 1394 188 33 11 chr3 144986616 144986892 -73050266 - AluJo SINE Alu -30 282 1 246 305 32 0 chr3 144987160 144987255 -73049903 + L1MC/D LINE L1 5770 5867 -1941 302 253 11 23 chr3 144987279 144987366 -73049792 + (TATG)n Simple_repeat Simple_repeat 2 87 0 2418 77 7 0 chr3 144987506 144987804 -73049354 - AluY SINE Alu -11 300 1 306 270 0 0 chr3 144989482 144989545 -73047613 + MIR SINE MIR 107 169 -93 2120 115 20 3 chr3 144993319 144993614 -73043544 + AluSx SINE Alu 1 300 -12 231 274 0 0 chr3 144993788 144993839 -73043319 - L3 LINE CR1 -15 1562 1512 2343 124 13 0 chr3 144993905 144994284 -73042874 + HSMAR2 DNA Mariner 1 384 -918 241 266 18 18 chr3 144994284 144994393 -73042765 - L1P LINE L1 -740 5425 5317 183 309 24 0 chr3 144994595 144994637 -73042521 + L2 LINE L2 3210 3252 -20 413 289 69 19 chr3 144994821 144994981 -73042177 + MIR SINE MIR 16 187 -62 379 252 148 0 chr3 144998071 144998206 -73038952 + MIR SINE MIR 33 187 -75 918 199 11 5 chr3 144998486 144998672 -73038486 + MER5A DNA MER1_type 1 187 -2 9767 157 36 9 chr3 144999935 145002246 -73034912 - L1M2 LINE L1 -592 5699 3331 414 305 137 12 chr3 145002646 145003049 -73034109 + L1ME4a LINE L1 5349 5705 -416 324 273 108 5 chr3 145003054 145003248 -73033910 + L1ME4a LINE L1 5824 6037 -84 23 0 0 0 chr3 145004501 145004524 -73032634 + AT_rich Low_complexity Low_complexity 1 23 0 2403 139 65 2 chr3 145004644 145005047 -73032111 + MSTA LTR MaLR 1 428 0 228 286 187 11 chr3 145008033 145008124 -73029034 + L2 LINE L2 3161 3267 -5 893 292 39 6 chr3 145008155 145008511 -73028647 + L1MC/D LINE L1 5435 5802 -2006 9443 116 69 35 chr3 145008645 145010375 -73026783 - Tigger1 DNA MER2_type -628 1790 1 16453 37 7 1 chr3 145010708 145013377 -73023781 + L1PA3 LINE L1 3310 5992 -163 7111 177 7 12 chr3 145013617 145015293 -73021865 - L1P3 LINE L1 -3773 2688 1029 22 0 0 0 chr3 145015283 145015305 -73021853 + GC_rich Low_complexity Low_complexity 1 22 0 * 319 296 178 0 chr3 145016206 145016341 -73020817 - MER5B DNA MER1_type -3 175 17 212 342 123 0 chr3 145016389 145016503 -73020655 + MER5B DNA MER1_type 5 132 -46 21 36 0 0 chr3 145017045 145017073 -73020085 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr3 145017092 145017136 -73020022 + AT_rich Low_complexity Low_complexity 1 44 0 207 0 0 0 chr3 145017900 145017923 -73019235 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 657 253 107 125 chr3 145018218 145018568 -73018590 + Charlie8 DNA MER1_type 75 415 -2002 2102 141 3 3 chr3 145018568 145018880 -73018278 + AluSx SINE Alu 1 312 0 657 253 107 125 chr3 145018880 145019008 -73018150 + Charlie8 DNA MER1_type 415 544 -1873 453 208 126 38 chr3 145019226 145019385 -73017773 - MIR SINE MIR -27 235 63 340 310 103 0 chr3 145020098 145020253 -73016905 - MIR SINE MIR -20 242 72 203 297 31 0 chr3 145020251 145020315 -73016843 + MIR SINE MIR 83 148 -114 * 2304 142 0 3 chr3 145020655 145020987 -73016171 + MER1B DNA MER1_type 8 338 -1 1618 241 29 24 chr3 145020987 145021439 -73015719 + MER82 DNA MER2_type 31 484 -169 183 80 0 0 chr3 145022316 145022341 -73014817 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 2348 124 36 33 chr3 145022601 145022964 -73014194 + THE1B LTR MaLR 1 364 0 2326 96 0 7 chr3 145023216 145023519 -73013639 - AluY SINE Alu -10 301 1 272 331 37 44 chr3 145024847 145024983 -73012175 - MIR3 SINE MIR -48 160 26 2327 103 0 3 chr3 145025135 145025435 -73011723 + AluSx SINE Alu 1 299 -13 258 262 87 35 chr3 145025650 145025822 -73011336 + L1ME LINE L1 5718 5898 -223 24 0 0 0 chr3 145025997 145026021 -73011137 + AT_rich Low_complexity Low_complexity 1 24 0 2271 167 17 36 chr3 145026650 145027069 -73010089 - MSTB1 LTR MaLR -21 411 1 655 305 78 36 chr3 145027479 145027933 -73009225 + MLT1G1 LTR MaLR 1 595 0 1362 142 5 23 chr3 145028207 145028425 -73008733 + L1PB3 LINE L1 5941 6154 0 28 0 0 0 chr3 145028434 145028462 -73008696 + AT_rich Low_complexity Low_complexity 1 28 0 492 206 0 22 chr3 145028508 145028600 -73008558 - MER21B LTR ERV1 -773 90 1 279 275 199 15 chr3 145028612 145028874 -73008284 + L1M4 LINE L1 2510 2819 -3327 206 79 26 26 chr3 145028915 145028953 -73008205 + (TA)n Simple_repeat Simple_repeat 1 38 0 2114 75 4 0 chr3 145028987 145029252 -73007906 + AluY SINE Alu 1 266 -45 829 113 0 0 chr3 145029252 145029367 -73007791 + AluY SINE Alu 194 308 -3 617 121 9 60 chr3 145029369 145029485 -73007673 + L1MA9 LINE L1 5814 5923 -389 815 190 15 0 chr3 145029485 145029622 -73007536 - Tigger1 DNA MER2_type 0 2418 2280 191 262 82 66 chr3 145030505 145030566 -73006592 + L2 LINE L2 3147 3208 -64 7611 124 17 3 chr3 145030862 145032072 -73005086 + L1P LINE L1 3644 4870 -1276 3997 180 49 5 chr3 145032436 145033176 -73003982 - MER4D LTR ERV1 0 903 132 267 286 71 28 chr3 145033422 145033728 -73003430 - L1P LINE L1 -1005 5141 4827 2672 137 55 11 chr3 145034172 145034641 -73002517 - L1MA8 LINE L1 -103 6188 5699 235 317 98 0 chr3 145034778 145034860 -73002298 - MIR SINE MIR -62 146 57 190 288 0 0 chr3 145034983 145035042 -73002116 + C-rich Low_complexity Low_complexity 1 59 0 51 54 0 0 chr3 145035042 145035116 -73002042 + GC_rich Low_complexity Low_complexity 1 74 0 378 314 47 0 chr3 145086666 145086835 -72950323 + MIR SINE MIR 48 224 -38 237 232 18 0 chr3 145087139 145087195 -72949963 + MER21A LTR ERV1 752 808 -123 258 259 41 4 chr3 145089532 145089679 -72947479 - MIR SINE MIR -52 210 2 215 187 0 40 chr3 145089793 145089868 -72947290 - L2 LINE L2 -285 2987 2916 1290 210 253 39 chr3 145090220 145090710 -72946448 + MLT1G1 LTR MaLR 1 595 0 1928 154 25 20 chr3 145090740 145091096 -72946062 - THE1C LTR MaLR -2 373 16 354 338 40 46 chr3 145091806 145092108 -72945050 - L2 LINE L2 -7 3265 2966 327 164 14 27 chr3 145094327 145094400 -72942758 - L1MA9 LINE L1 -7 6305 6234 2699 128 39 9 chr3 145094405 145094843 -72942315 - Tigger2 DNA MER2_type -1 2717 2267 362 200 0 0 chr3 145094827 145094892 -72942266 - Tigger2 DNA MER2_type -2649 69 5 * 1165 164 34 5 chr3 145094924 145095131 -72942027 - Tigger3(Golem) DNA MER2_type -7 3022 2810 25224 180 75 78 chr3 145095243 145102151 -72935007 + MER51B-int LTR ERV1 439 7324 -492 2544 72 0 3 chr3 145102151 145102456 -72934702 - AluY SINE Alu -7 304 1 25224 180 75 78 chr3 145102456 145102948 -72934210 + MER51B-int LTR ERV1 7324 7816 0 1989 119 102 34 chr3 145102949 145103302 -72933856 + MER51B LTR ERV1 1 377 0 1891 207 99 112 chr3 145103302 145104908 -72932250 - MER109 Unknown Unknown -1143 1289 1 24 53 0 0 chr3 145105440 145105478 -72931680 + AT_rich Low_complexity Low_complexity 1 38 0 340 311 162 28 chr3 145105491 145105960 -72931198 + L1MC4a LINE L1 5311 5842 -1966 23 0 0 0 chr3 145106104 145106127 -72931031 + AT_rich Low_complexity Low_complexity 1 23 0 247 263 53 0 chr3 145107370 145107446 -72929712 - L2 LINE L2 -2 3270 3191 526 238 181 24 chr3 145108539 145108702 -72928456 + MIR SINE MIR 5 210 -52 1747 150 20 24 chr3 145108702 145108995 -72928163 + AluJo SINE Alu 1 292 -20 526 238 181 24 chr3 145108995 145109041 -72928117 + MIR SINE MIR 210 247 -15 812 148 0 8 chr3 145109561 145109683 -72927475 - FLAM_C SINE Alu -18 125 5 2661 126 11 38 chr3 145109747 145110200 -72926958 - MER65A LTR ERV1 0 445 5 439 270 97 45 chr3 145110333 145110644 -72926514 + MER102a DNA MER1_type 1 327 -3 1376 151 5 5 chr3 145112680 145112898 -72924260 - AluJb SINE Alu -8 304 87 2326 94 3 0 chr3 145114192 145114489 -72922669 + AluSx SINE Alu 1 298 -14 2397 87 0 3 chr3 145114576 145114876 -72922282 - AluSx SINE Alu -13 299 1 1451 164 45 22 chr3 145115201 145115522 -72921636 + MER33 DNA MER1_type 1 313 -11 243 400 30 0 chr3 145116496 145116596 -72920562 + L2 LINE L2 3158 3260 -12 2386 93 0 3 chr3 145117164 145117465 -72919693 - AluSg SINE Alu -10 300 1 589 197 158 0 chr3 145117655 145117807 -72919351 + MER104 DNA MER2_type 1 176 -4 320 325 103 67 chr3 145118111 145118604 -72918554 - HAL1 LINE L1 -367 2140 1630 569 294 98 50 chr3 145118810 145119575 -72917583 - L1MEd LINE L1 -4869 1250 449 241 279 23 12 chr3 145119612 145119698 -72917460 - L1MEd LINE L1 -5783 336 250 2526 67 0 0 chr3 145119716 145120014 -72917144 - AluY SINE Alu -13 298 1 2232 128 3 0 chr3 145120016 145120322 -72916836 - AluSq SINE Alu -6 307 1 447 125 42 0 chr3 145120657 145120729 -72916429 - Tigger4(Zombi) DNA MER2_type -1 2730 2656 247 149 64 0 chr3 145120699 145120746 -72916412 - Tigger4(Zombi) DNA MER2_type -2681 50 1 * 403 184 69 11 chr3 145122010 145122097 -72915061 + MIR3 SINE MIR 114 205 -3 187 324 135 9 chr3 145123589 145123700 -72913458 - L2 LINE L2 -2 3311 3187 236 163 0 20 chr3 145123805 145123854 -72913304 + MER58 DNA MER1_type 2373 2420 0 414 0 0 0 chr3 145124621 145124667 -72912491 + (TG)n Simple_repeat Simple_repeat 2 47 0 21 0 0 0 chr3 145125068 145125089 -72912069 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr3 145125761 145125781 -72911377 + (T)n Simple_repeat Simple_repeat 1 20 0 466 261 37 22 chr3 145127492 145127626 -72909532 - MER5A DNA MER1_type 0 189 54 1513 115 35 9 chr3 145129102 145129328 -72907830 - AluSg/x SINE Alu -15 297 66 24 0 0 0 chr3 145134347 145134371 -72902787 + AT_rich Low_complexity Low_complexity 1 24 0 954 180 13 82 chr3 145136623 145136856 -72900302 - MER20 DNA MER1_type -2 217 1 376 280 127 32 chr3 145136976 145137133 -72900025 - MER5A DNA MER1_type 0 189 18 909 201 50 0 chr3 145137154 145137353 -72899805 + MER3 DNA MER1_type 1 209 0 240 269 42 42 chr3 145137806 145137925 -72899233 + MIR SINE MIR 18 136 -72 237 176 129 47 chr3 145139054 145139139 -72898019 + MIR SINE MIR 47 138 -124 366 296 20 0 chr3 145139773 145139871 -72897287 + MIR SINE MIR 36 135 -73 224 222 194 28 chr3 145140596 145140704 -72896454 + L2 LINE L2 3146 3271 -1 404 249 28 33 chr3 145141065 145141246 -72895912 + (TG)n Simple_repeat Simple_repeat 1 180 0 243 0 0 0 chr3 145141309 145141336 -72895822 + (TG)n Simple_repeat Simple_repeat 2 28 0 1909 184 23 3 chr3 145141454 145141808 -72895350 + MLT1A1 LTR MaLR 1 361 -4 1179 254 118 44 chr3 145143008 145143464 -72893694 - Charlie4a DNA MER1_type 0 508 19 206 302 128 0 chr3 145144427 145144513 -72892645 - MIR SINE MIR -101 161 65 195 42 0 0 chr3 145145805 145145829 -72891329 + (CA)n Simple_repeat Simple_repeat 1 24 0 270 203 16 13 chr3 145148135 145148224 -72888934 + MIR SINE MIR 36 123 -85 449 308 57 47 chr3 145148275 145148697 -72888461 + L1ME4a LINE L1 5693 6118 -3 404 307 53 32 chr3 145148979 145149168 -72887990 - MIR3 SINE MIR -4 204 12 762 267 226 8 chr3 145149409 145149802 -72887356 + MLT1J LTR MaLR 2 480 -31 464 250 16 0 chr3 145150350 145150474 -72886684 + L1ME LINE L1 141 266 -5939 1772 174 3 20 chr3 145150478 145150782 -72886376 + AluJb SINE Alu 1 299 -13 586 254 30 24 chr3 145151182 145151347 -72885811 + MLT1A1 LTR MaLR 200 365 0 1523 281 58 47 chr3 145151386 145151929 -72885229 + L1ME LINE L1 682 1218 -5178 2273 125 0 0 chr3 145151929 145152234 -72884924 + AluSx SINE Alu 1 305 -7 1523 281 58 47 chr3 145152234 145152815 -72884343 + L1ME LINE L1 1218 1818 -4578 403 299 59 34 chr3 145152864 145153068 -72884090 - MIR SINE MIR -1 261 53 1098 351 104 25 chr3 145153142 145154220 -72882938 + L2 LINE L2 1527 2689 -625 1345 192 122 37 chr3 145154222 145154627 -72882531 - MSTD LTR MaLR 0 396 1 243 333 170 0 chr3 145154812 145154971 -72882187 + L2 LINE L2 2898 3083 -189 490 299 86 11 chr3 145155035 145155209 -72881949 + MER5A DNA MER1_type 1 187 -2 241 256 179 0 chr3 145155345 145155423 -72881735 - MIR SINE MIR -168 94 3 1168 258 113 48 chr3 145155719 145157014 -72880144 + L1ME LINE L1 402 1805 -4591 305 236 43 0 chr3 145157468 145157545 -72879613 - MIR SINE MIR -65 143 71 2133 114 9 35 chr3 145158226 145158542 -72878616 - AluJb SINE Alu -3 309 2 293 311 68 3 chr3 145159424 145159566 -72877592 + MIR SINE MIR 45 195 -67 310 237 140 0 chr3 145159829 145159922 -72877236 - MER103 DNA DNA -59 107 2 277 229 27 62 chr3 145161637 145161749 -72875409 + MLT1L LTR MaLR 110 278 -331 198 0 0 0 chr3 145162716 145162738 -72874420 + (A)n Simple_repeat Simple_repeat 1 22 0 180 319 0 60 chr3 145163026 145163142 -72874016 + L2 LINE L2 2385 2493 -821 846 180 94 71 chr3 145163453 145163663 -72873495 - ORSL DNA AcHobo -2 273 54 1855 179 54 5 chr3 145163663 145164031 -72873127 - MLT1B LTR MaLR 0 390 5 846 180 94 71 chr3 145164031 145164087 -72873071 - ORSL DNA AcHobo -221 54 1 1670 208 0 0 chr3 145164288 145164572 -72872586 - AluJb SINE Alu -28 284 1 963 219 146 42 chr3 145165438 145165848 -72871310 + MLT1C LTR MaLR 7 459 -8 406 294 21 7 chr3 145168812 145168955 -72868203 - MER103 DNA DNA -2 164 20 279 114 0 0 chr3 145169414 145169458 -72867700 + (TG)n Simple_repeat Simple_repeat 1 44 0 532 257 35 6 chr3 145170463 145170634 -72866524 - MER20B DNA MER1_type -607 176 1 2319 121 52 27 chr3 145170845 145171290 -72865868 - Tigger3b DNA MER2_type -502 729 274 647 158 0 0 chr3 145171288 145171389 -72865769 - Tigger3b DNA MER2_type -1129 102 2 * 549 90 36 81 chr3 145171389 145171500 -72865658 - L1MA9 LINE L1 -78 6234 6129 990 156 61 6 chr3 145171502 145171722 -72865436 + L1MA9 LINE L1 5887 6121 -191 239 293 252 0 chr3 145172251 145172374 -72864784 + LTR67 LTR ERVL 36 189 -368 369 260 104 58 chr3 145172494 145172667 -72864491 + LTR67 LTR ERVL 369 549 -8 4884 257 74 33 chr3 145173104 145174891 -72862267 + L1MEc LINE L1 34 1893 -4503 513 301 116 0 chr3 145174936 145175135 -72862023 + L1MEc LINE L1 1526 1747 -4649 605 261 36 12 chr3 145175165 145175330 -72861828 + MIR SINE MIR 23 191 -71 253 209 233 0 chr3 145175335 145175421 -72861737 + L1MD3 LINE L1 7880 7985 -10 269 307 88 0 chr3 145177765 145177879 -72859279 - MIR3 SINE MIR -3 205 82 185 254 60 104 chr3 145177890 145178024 -72859134 + MIR SINE MIR 19 146 -62 1641 233 100 63 chr3 145178065 145178637 -72858521 - MLT1E LTR MaLR 0 593 1 209 346 117 17 chr3 145183008 145183187 -72853971 - MIR SINE MIR -19 243 47 204 209 0 0 chr3 145183204 145183247 -72853911 + (CTGGGG)n Simple_repeat Simple_repeat 5 47 0 237 329 99 7 chr3 145183761 145183913 -72853245 - MIR3 SINE MIR 0 208 43 384 317 133 0 chr3 145184380 145184560 -72852598 + MIR SINE MIR 47 250 -12 23 42 0 21 chr3 145185573 145185600 -72851558 + AT_rich Low_complexity Low_complexity 1 28 -19 2098 117 0 30 chr3 145185600 145185899 -72851259 - AluSx SINE Alu -22 290 1 23 42 0 21 chr3 145185899 145185919 -72851239 + AT_rich Low_complexity Low_complexity 28 47 0 1812 114 0 0 chr3 145186477 145186713 -72850445 + AluSx SINE Alu 1 236 -76 249 242 6 158 chr3 145187610 145187775 -72849383 + L2 LINE L2 3039 3178 -94 263 314 52 52 chr3 145189434 145189606 -72847552 + MIR3 SINE MIR 30 201 -7 243 299 124 0 chr3 145189747 145189844 -72847314 - L2 LINE L2 -12 3301 3193 221 257 29 29 chr3 145189837 145189907 -72847251 - MIR SINE MIR -119 143 74 * 330 270 14 27 chr3 145191294 145191442 -72845716 + C-rich Low_complexity Low_complexity 4 149 0 307 265 0 20 chr3 145191634 145191736 -72845422 + G-rich Low_complexity Low_complexity 2 101 0 195 139 0 0 chr3 145191804 145191840 -72845318 + (GGA)n Simple_repeat Simple_repeat 1 36 0 23 68 0 0 chr3 145192062 145192106 -72845052 + GC_rich Low_complexity Low_complexity 1 44 0 321 316 90 45 chr3 145194998 145195131 -72842027 - L2 LINE L2 0 3272 3134 271 247 41 14 chr3 145195252 145195325 -72841833 - L2 LINE L2 -205 3067 2993 541 284 46 35 chr3 145195326 145195523 -72841635 - L2 LINE L2 -3 3310 3112 679 191 52 0 chr3 145196325 145196440 -72840718 + FLAM_A SINE Alu 1 121 -12 310 205 17 95 chr3 145196660 145196826 -72840332 + MER21B LTR ERV1 329 577 -354 759 158 0 15 chr3 145198163 145198296 -72838862 + FLAM_A SINE Alu 11 141 -1 1411 98 193 11 chr3 145199138 145199423 -72837735 + MER44D DNA MER2_type 1 607 -2 388 247 36 72 chr3 145200170 145200393 -72836765 - L1ME4a LINE L1 -293 5828 5614 823 266 95 37 chr3 145203451 145203861 -72833297 - MLT1J LTR MaLR -77 434 1 824 175 67 31 chr3 145205165 145205359 -72831799 + MER20 DNA MER1_type 2 202 -17 2086 135 10 7 chr3 145205564 145205868 -72831290 - AluJb SINE Alu -7 305 1 647 228 21 32 chr3 145207577 145207766 -72829392 - L1MC4 LINE L1 -167 7875 7689 1793 183 146 29 chr3 145207773 145208231 -72828927 + L1MC4 LINE L1 6699 7220 -822 2940 13 0 0 chr3 145208231 145208546 -72828612 + AluYb8 SINE Alu 1 315 -3 1793 183 146 29 chr3 145208546 145208579 -72828579 + L1MC4 LINE L1 7220 7248 -794 182 37 37 0 chr3 145208596 145208623 -72828535 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 237 298 179 53 chr3 145208731 145208993 -72828165 + L2 LINE L2 2969 3263 -9 188 290 65 0 chr3 145209520 145209582 -72827576 - MER5B DNA MER1_type -112 66 1 1106 117 19 0 chr3 145209706 145209868 -72827290 - L1PA16 LINE L1 -7 6159 5995 2440 95 0 3 chr3 145209926 145210232 -72826926 - AluSc SINE Alu -4 305 1 339 25 0 0 chr3 145210256 145210296 -72826862 + (TG)n Simple_repeat Simple_repeat 1 40 0 210 37 0 0 chr3 145211161 145211188 -72825970 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 339 307 152 12 chr3 145211188 145211445 -72825713 + L1MC4a LINE L1 5602 5894 -1914 754 289 13 17 chr3 145212710 145212945 -72824213 + MIR SINE MIR 25 258 -4 993 188 61 5 chr3 145214505 145214702 -72822456 - MER3 DNA MER1_type -1 208 1 278 250 93 19 chr3 145214932 145215040 -72822118 + MER5A DNA MER1_type 55 170 -19 236 345 0 0 chr3 145215103 145215187 -72821971 + L2 LINE L2 3162 3245 -27 25 31 0 0 chr3 145215713 145215745 -72821413 + AT_rich Low_complexity Low_complexity 1 32 0 793 314 108 49 chr3 145216205 145216967 -72820191 + L2 LINE L2 1736 2542 -772 1787 191 52 0 chr3 145216997 145217359 -72819799 + LTR65 LTR ERV1 289 669 0 563 304 86 33 chr3 145217361 145217671 -72819487 + L1M4 LINE L1 3928 4260 -1886 2080 145 3 0 chr3 145217685 145217989 -72819169 + AluSx SINE Alu 1 305 -7 2205 96 11 0 chr3 145217991 145218299 -72818859 + AluSp SINE Alu 1 311 0 21 0 0 0 chr3 145218344 145218365 -72818793 + AT_rich Low_complexity Low_complexity 1 21 0 315 146 0 0 chr3 145218508 145218563 -72818595 + L1M4 LINE L1 4525 4579 -1567 2656 196 58 16 chr3 145218681 145219615 -72817543 + L1MA9 LINE L1 5059 6031 -281 890 133 0 15 chr3 145219628 145219763 -72817395 + AluJ SINE Alu 1 133 -169 225 148 37 0 chr3 145219775 145219829 -72817329 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 850 97 110 32 chr3 145219829 145219984 -72817174 + AluJ SINE Alu 129 295 -17 261 151 12 105 chr3 145219986 145220072 -72817086 + L1MA9 LINE L1 6029 6106 -206 3274 175 98 31 chr3 145220687 145221425 -72815733 - MER109 Unknown Unknown -94 2338 1534 333 0 0 0 chr3 145221425 145221462 -72815696 + (TAA)n Simple_repeat Simple_repeat 2 38 0 3274 175 98 31 chr3 145221462 145221567 -72815591 - MER109 Unknown Unknown -898 1534 1438 966 93 33 20 chr3 145221585 145221736 -72815422 + MER1B DNA MER1_type 187 339 0 * 7215 164 37 41 chr3 145221736 145221912 -72815246 - MER109 Unknown Unknown -987 1445 1270 5740 72 55 52 chr3 145221912 145222863 -72814295 + SVA Other Other 433 1386 0 7215 164 37 41 chr3 145222863 145224558 -72812600 - MER109 Unknown Unknown -1162 1270 3 306 222 111 7 chr3 145224732 145224885 -72812273 - L1ME3A LINE L1 -229 5941 5773 198 0 0 0 chr3 145224920 145224942 -72812216 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 2140 113 0 0 chr3 145224955 145225239 -72811919 - AluSc SINE Alu -25 284 1 517 216 29 7 chr3 145225249 145225388 -72811770 - L1MD3 LINE L1 -16 7979 7838 294 247 113 13 chr3 145225405 145225555 -72811603 - L1ME3A LINE L1 -432 5730 5566 189 0 0 0 chr3 145225642 145225663 -72811495 + (TA)n Simple_repeat Simple_repeat 1 21 0 1506 169 50 36 chr3 145225663 145226023 -72811135 - L1MD1 LINE L1 -3 6633 6269 398 234 45 0 chr3 145226173 145226327 -72810831 - L1ME3A LINE L1 -222 5931 5771 3138 170 39 25 chr3 145226332 145226987 -72810171 - L1MD1 LINE L1 -358 6278 5607 1640 158 0 16 chr3 145226987 145227241 -72809917 - AluJo SINE Alu -57 255 6 3138 170 39 25 chr3 145227241 145227612 -72809546 - L1MD1 LINE L1 -1029 5607 5243 2433 210 78 26 chr3 145227614 145228195 -72808963 - L1MD1 LINE L1 -5899 641 31 2594 270 89 17 chr3 145228371 145229780 -72807378 - L1ME3A LINE L1 -12 6158 4608 252 59 0 0 chr3 145229780 145229814 -72807344 + (CA)n Simple_repeat Simple_repeat 2 35 0 2594 270 89 17 chr3 145229814 145229978 -72807180 - L1ME3A LINE L1 -1562 4608 4457 298 220 30 10 chr3 145230006 145230106 -72807052 - L1ME3A LINE L1 -1834 4312 4211 * 746 191 21 59 chr3 145230102 145230315 -72806843 - L1ME3A LINE L1 -678 5471 5266 1897 157 0 13 chr3 145230315 145230620 -72806538 - AluJo SINE Alu -11 301 1 746 191 21 59 chr3 145230620 145230642 -72806516 - L1ME3A LINE L1 -883 5266 5245 3833 233 36 24 chr3 145230658 145231842 -72805316 - L1MEc LINE L1 -2519 3610 2437 2161 161 69 30 chr3 145231842 145232308 -72804850 - MER66B LTR ERV1 0 486 3 3833 233 36 24 chr3 145232308 145232873 -72804285 - L1MEc LINE L1 -3692 2437 1880 1006 117 37 0 chr3 145232884 145233047 -72804111 + Tigger2 DNA MER2_type 315 483 -2235 601 214 5 65 chr3 145233069 145233182 -72803976 + Charlie5 DNA MER1_type 1227 1324 -1300 2444 61 0 3 chr3 145233182 145233477 -72803681 + AluY SINE Alu 1 294 -17 601 214 5 65 chr3 145233477 145233564 -72803594 + Charlie5 DNA MER1_type 1324 1415 -1209 588 207 45 17 chr3 145233561 145233740 -72803418 + Charlie5 DNA MER1_type 1679 1862 -750 * 1193 148 0 0 chr3 145233740 145233923 -72803235 - AluSg/x SINE Alu 0 312 130 2768 162 60 50 chr3 145233923 145234609 -72802549 + Charlie5 DNA MER1_type 1849 2545 -79 2416 73 3 3 chr3 145234609 145234910 -72802248 - AluY SINE Alu -10 301 1 2768 162 60 50 chr3 145234910 145234971 -72802187 + Charlie5 DNA MER1_type 2545 2604 -20 870 230 103 61 chr3 145235145 145235481 -72801677 - L1MEc LINE L1 -4720 1562 1242 2290 119 0 0 chr3 145235481 145235791 -72801367 - AluSx SINE Alu -2 310 1 870 230 103 61 chr3 145235791 145236077 -72801081 - L1MEc LINE L1 -5040 1242 760 228 261 54 43 chr3 145236359 145236451 -72800707 - L1MEc LINE L1 -5466 653 561 2001 112 100 26 chr3 145237322 145237661 -72799497 + THE1B LTR MaLR 1 364 0 215 308 0 13 chr3 145238130 145238208 -72798950 + CT-rich Low_complexity Low_complexity 5 81 0 1849 151 4 0 chr3 145238504 145238783 -72798375 + AluJb SINE Alu 1 280 -32 252 0 0 0 chr3 145238784 145238812 -72798346 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 236 252 26 7 chr3 145239367 145239522 -72797636 + (TGGA)n Simple_repeat Simple_repeat 1 158 0 318 318 55 9 chr3 145239720 145239830 -72797328 + MIR SINE MIR 6 120 -142 806 262 103 50 chr3 145239990 145240079 -72797079 + HAL1b LINE L1 650 733 -615 2114 132 0 19 chr3 145240079 145240389 -72796769 + AluSx SINE Alu 3 306 -6 806 262 103 50 chr3 145240389 145240956 -72796202 + HAL1b LINE L1 733 1341 -7 1658 181 133 31 chr3 145241726 145242184 -72794974 - MLT1D LTR MaLR 0 505 1 313 0 0 0 chr3 145243315 145243351 -72793807 - U2 snRNA snRNA -152 36 1 198 355 43 43 chr3 145243351 145243492 -72793666 + L2 LINE L2 2741 2881 -433 1135 128 45 11 chr3 145243726 145243905 -72793253 - AluJo SINE Alu -8 304 120 1993 78 4 4 chr3 145243923 145244191 -72792967 + AluY SINE Alu 44 311 0 1278 134 121 21 chr3 145344492 145344731 -72692427 + MSTA LTR MaLR 166 428 0 364 149 54 0 chr3 145346440 145346514 -72690644 - L1MA10 LINE L1 -1 6333 6256 263 256 73 58 chr3 145346683 145346789 -72690369 + L1MC4 LINE L1 7142 7252 -790 2071 133 143 8 chr3 145346789 145347166 -72689992 + MSTA LTR MaLR 1 428 0 263 256 73 58 chr3 145347166 145347196 -72689962 + L1MC4 LINE L1 7252 7280 -762 229 217 14 14 chr3 145348442 145348511 -72688647 + L1ME4a LINE L1 6008 6076 -45 2367 85 7 3 chr3 145349313 145349620 -72687538 - AluSq SINE Alu -5 308 1 12482 191 35 75 chr3 145350422 145355567 -72681591 + L1M2b LINE L1 991 5998 -850 4582 126 18 37 chr3 145355550 145356131 -72681027 + L1PA16 LINE L1 5387 5951 -215 * 2298 108 0 7 chr3 145356131 145356436 -72680722 + AluSx SINE Alu 1 303 -9 4582 126 18 37 chr3 145356436 145356633 -72680525 + L1PA16 LINE L1 5951 6150 -16 * 11771 145 37 16 chr3 145356627 145358591 -72678567 + L1MA4A LINE L1 3025 4361 -1944 1340 220 24 20 chr3 145358591 145358887 -72678271 + AluJo SINE Alu 5 301 -11 11771 145 37 16 chr3 145358887 145359445 -72677713 + L1MA4A LINE L1 4361 4906 -1399 4006 136 49 19 chr3 145359445 145360143 -72677015 + LTR62 LTR ERVK 1 719 0 11771 145 37 16 chr3 145360143 145360871 -72676287 + L1MA4A LINE L1 4906 6302 -3 205 353 39 59 chr3 145361594 145361696 -72675462 + L2 LINE L2 3141 3240 -32 1856 135 7 4 chr3 145361842 145362173 -72674985 + AluSx SINE Alu 1 332 0 186 333 147 0 chr3 145362449 145362524 -72674634 - L2 LINE L2 -50 3222 3137 382 224 233 0 chr3 145362903 145363019 -72674139 + MIR3 SINE MIR 43 185 -23 21 57 0 0 chr3 145363195 145363230 -72673928 + AT_rich Low_complexity Low_complexity 1 35 0 289 285 158 13 chr3 145363272 145363430 -72673728 - MIR SINE MIR -44 218 38 1923 36 4 0 chr3 145363964 145364189 -72672969 + AluY SINE Alu 80 305 -6 263 275 43 0 chr3 145364235 145364304 -72672854 - MIR3 SINE MIR -12 196 125 1669 244 102 56 chr3 145364809 145366675 -72670483 + L1MC5 LINE L1 5261 7209 -752 888 158 62 67 chr3 145366947 145367076 -72670082 + MER3 DNA MER1_type 1 130 -79 2437 52 10 20 chr3 145367076 145367381 -72669777 - AluSg SINE Alu -8 302 1 888 158 62 67 chr3 145367381 145367460 -72669698 + MER3 DNA MER1_type 130 208 -1 1760 153 73 48 chr3 145367487 145367633 -72669525 - MER1B DNA MER1_type -2373 329 188 2104 99 17 7 chr3 145367633 145367925 -72669233 - AluSg SINE Alu -15 295 1 1760 153 73 48 chr3 145367925 145368241 -72668917 - MER1B DNA MER1_type -2514 188 1 335 281 126 29 chr3 145368242 145368552 -72668606 + L1MC5 LINE L1 7349 7688 -273 22 35 0 0 chr3 145369152 145369181 -72667977 + AT_rich Low_complexity Low_complexity 1 29 0 189 400 7 21 chr3 145370801 145370941 -72666217 - L2 LINE L2 -196 3076 2939 2502 57 3 22 chr3 145371842 145372158 -72665000 - AluY SINE Alu -1 310 1 411 245 129 18 chr3 145374334 145374497 -72662661 - MIR SINE MIR -12 250 70 351 316 153 40 chr3 145374560 145374886 -72662272 - L2 LINE L2 0 3272 2910 1215 206 120 94 chr3 145375343 145375809 -72661349 - MLT1H LTR MaLR 0 549 72 2358 69 3 40 chr3 145376609 145376913 -72660245 + AluSp SINE Alu 1 293 -20 460 299 60 20 chr3 145377052 145377303 -72659855 - MIR SINE MIR 0 262 2 348 307 49 31 chr3 145379419 145379582 -72657576 - L2 LINE L2 -35 3278 3113 1284 151 75 56 chr3 145379587 145379892 -72657266 - LTR16A1 LTR ERVL 0 457 147 276 140 40 20 chr3 145380008 145380058 -72657100 - LTR16A1 LTR ERVL -356 101 51 224 336 119 22 chr3 145380893 145381119 -72656039 - L2 LINE L2 -561 2753 2506 2049 106 6 75 chr3 145381431 145381751 -72655407 + AluSx SINE Alu 1 298 -14 186 343 143 0 chr3 145381752 145381822 -72655336 - MIR SINE MIR -162 100 21 2398 141 23 3 chr3 145382617 145383008 -72654150 - L1PA13 LINE L1 -36 6127 5729 762 235 18 0 chr3 145383251 145383421 -72653737 + MER45A DNA AcHobo 5 177 -1 313 206 0 0 chr3 145383996 145384059 -72653099 - MER116 DNA Mariner -1 79 17 207 0 0 0 chr3 145385021 145385044 -72652114 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2157 78 24 27 chr3 145385046 145385341 -72651817 - AluY SINE Alu -17 294 1 699 281 36 12 chr3 145385531 145385780 -72651378 + MIR SINE MIR 8 262 0 25 0 0 0 chr3 145385842 145385867 -72651291 + AT_rich Low_complexity Low_complexity 1 25 0 237 345 26 9 chr3 145385899 145386012 -72651146 + MIR SINE MIR 16 130 -78 2278 105 7 0 chr3 145386389 145386683 -72650475 - AluSx SINE Alu -16 296 1 192 111 0 0 chr3 145386697 145386733 -72650425 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 201 121 0 0 chr3 145387036 145387069 -72650089 + (TGGA)n Simple_repeat Simple_repeat 3 35 0 42 0 0 0 chr3 145387897 145387939 -72649219 + AT_rich Low_complexity Low_complexity 1 42 0 245 219 27 27 chr3 145388941 145389014 -72648144 + LTR50 LTR ERVL 716 788 -7 1110 303 45 10 chr3 145389014 145389161 -72647997 + L1MC4a LINE L1 5395 5535 -2273 2157 128 0 13 chr3 145389161 145389467 -72647691 - AluJb SINE Alu -10 302 1 1110 303 45 10 chr3 145389467 145389831 -72647327 + L1MC4a LINE L1 5535 5924 -1884 2114 151 3 49 chr3 145390041 145390326 -72646832 - MER7A DNA MER2_type -2692 346 82 1746 122 40 66 chr3 145390326 145390629 -72646529 - AluSx SINE Alu -17 295 1 2114 151 3 49 chr3 145390629 145390708 -72646450 - MER7A DNA MER2_type -2956 82 1 465 212 21 59 chr3 145390812 145390964 -72646194 + L1MC4 LINE L1 7839 8042 0 195 42 0 0 chr3 145392084 145392108 -72645050 + (T)n Simple_repeat Simple_repeat 1 24 0 1585 164 51 51 chr3 145392970 145393282 -72643876 + AluJo SINE Alu 1 312 0 1572 156 7 11 chr3 145394059 145394323 -72642835 + L1PA16 LINE L1 5892 6155 -6 2313 106 3 0 chr3 145394323 145394625 -72642533 - AluSg SINE Alu -7 303 1 197 302 16 0 chr3 145394791 145394854 -72642304 - L2 LINE L2 0 3313 3250 2220 101 17 0 chr3 145395700 145395997 -72641161 + AluSx SINE Alu 1 302 -10 842 237 124 24 chr3 145396167 145396416 -72640742 - MLT1L LTR MaLR 0 615 342 198 0 0 0 chr3 145396561 145396583 -72640575 + (CA)n Simple_repeat Simple_repeat 2 23 0 475 275 167 27 chr3 145396585 145396807 -72640351 + MLT1K LTR MaLR 314 566 -22 1627 173 40 80 chr3 145396901 145397277 -72639881 + L1MD3 LINE L1 7617 7977 -18 304 286 71 27 chr3 145397324 145397436 -72639722 - MIR3 SINE MIR -47 161 45 327 301 48 6 chr3 145398565 145398731 -72638427 + L3 LINE CR1 721 893 -684 285 321 51 22 chr3 145398723 145398860 -72638298 + MIR3 SINE MIR 40 180 -28 * 264 309 74 26 chr3 145398899 145399129 -72638029 + L1ME4a LINE L1 5779 6019 -102 1560 163 82 11 chr3 145399413 145399695 -72637463 - AluJb SINE Alu -10 302 1 357 253 41 34 chr3 145400254 145400400 -72636758 + L1MC4 LINE L1 6855 7001 -1041 243 259 0 0 chr3 145400601 145400655 -72636503 + (CATA)n Simple_repeat Simple_repeat 3 56 0 305 227 0 13 chr3 145402601 145402676 -72634482 + MLT1K LTR MaLR 488 561 -27 339 309 124 6 chr3 145402723 145402990 -72634168 + L3 LINE CR1 1156 1520 -57 269 108 16 5 chr3 145403297 145403353 -72633805 + MSTB LTR MaLR 53 110 -322 702 263 44 118 chr3 145403596 145404137 -72633021 + L2 LINE L2 2809 3309 -4 2105 137 134 8 chr3 145404529 145404909 -72632249 - MSTA LTR MaLR 0 428 1 336 326 15 22 chr3 145405537 145405672 -72631486 - L2 LINE L2 0 3313 3180 1206 272 23 64 chr3 145406097 145406579 -72630579 - LTR16B LTR ERVL 0 464 3 1250 238 124 20 chr3 145407448 145407851 -72629307 + Zaphod DNA AcHobo 163 607 -3424 365 200 0 0 chr3 145407878 145407938 -72629220 + MER115 DNA AcHobo 634 693 0 392 311 15 0 chr3 145409022 145409157 -72628001 - MIR3 SINE MIR -22 186 50 195 100 0 0 chr3 145409665 145409695 -72627463 + (CCCTAA)n Simple_repeat Simple_repeat 5 34 0 629 272 41 6 chr3 145409722 145409891 -72627267 - MER5B DNA MER1_type 0 178 4 3822 265 69 50 chr3 145410218 145411689 -72625469 + L1ME1 LINE L1 44 1565 -4831 1886 93 0 4 chr3 145411689 145411926 -72625232 + AluSg/x SINE Alu 66 301 -11 3822 265 69 50 chr3 145411926 145412457 -72624701 + L1ME1 LINE L1 1565 2084 -4312 819 235 27 76 chr3 145412492 145412576 -72624582 + L1ME1 LINE L1 2290 2377 -3838 2249 63 6 60 chr3 145412576 145412892 -72624266 + AluSc SINE Alu 1 299 -10 819 235 27 76 chr3 145412892 145413135 -72624023 + L1ME1 LINE L1 2377 2601 -3614 383 226 0 62 chr3 145413139 145413316 -72623842 + (TTTA)n Simple_repeat Simple_repeat 1 166 0 1348 189 78 23 chr3 145413316 145413660 -72623498 + L1ME1 LINE L1 2601 2963 -3252 378 0 0 0 chr3 145413669 145413711 -72623447 + (CA)n Simple_repeat Simple_repeat 2 43 0 600 211 0 0 chr3 145413713 145413822 -72623336 + MER21B-int LTR ERV1 1767 1875 -2316 * 4543 154 13 43 chr3 145413815 145414611 -72622547 + MER21B-int LTR ERV1 2718 3489 -702 3338 163 27 10 chr3 145414611 145415200 -72621958 + MER21B-int LTR ERV1 3593 4191 0 3622 176 107 11 chr3 145415254 145415992 -72621166 + MER21B LTR ERV1 15 823 -40 2769 223 76 12 chr3 145416055 145416446 -72620712 + L1ME1 LINE L1 2961 3326 -2889 2562 58 0 10 chr3 145416446 145416754 -72620404 + AluY SINE Alu 1 305 -6 2769 223 76 12 chr3 145416754 145417174 -72619984 + L1ME1 LINE L1 3326 3824 -2391 28 48 0 0 chr3 145417181 145417223 -72619935 + AT_rich Low_complexity Low_complexity 1 42 0 2926 204 85 39 chr3 145418761 145419672 -72617486 + L1ME1 LINE L1 3842 4710 -1525 2404 29 42 7 chr3 145419672 145419971 -72617187 - AluY SINE Alu 0 311 19 2926 204 85 39 chr3 145419971 145420308 -72616850 + L1ME1 LINE L1 4710 5030 -1205 1594 183 0 10 chr3 145420308 145420620 -72616538 + AluJb SINE Alu 1 309 -3 2926 204 85 39 chr3 145420620 145420667 -72616491 + L1ME1 LINE L1 5030 5073 -1162 291 54 0 0 chr3 145420667 145420704 -72616454 + (CA)n Simple_repeat Simple_repeat 2 38 0 2926 204 85 39 chr3 145420704 145421356 -72615802 + L1ME1 LINE L1 5073 5994 -241 1403 174 13 56 chr3 145421356 145421661 -72615497 + AluJo SINE Alu 1 292 -20 2926 204 85 39 chr3 145421661 145421760 -72615398 + L1ME1 LINE L1 5994 6087 -148 1036 176 0 17 chr3 145421765 145421941 -72615217 - MER45A DNA AcHobo -1 177 5 319 279 36 18 chr3 145421944 145422055 -72615103 + L1ME1 LINE L1 6083 6195 -40 297 227 61 55 chr3 145422292 145422323 -72614835 + MER3 DNA MER1_type 20 51 -158 669 234 109 0 chr3 145422323 145422507 -72614651 - MER3 DNA MER1_type 0 209 6 437 281 33 0 chr3 145423040 145423161 -72613997 - L3 LINE CR1 -47 1530 1406 1005 224 130 7 chr3 145424349 145424626 -72612532 - MER46C DNA MER2_type -22 316 6 351 317 92 8 chr3 145426103 145426223 -72610935 - MIR SINE MIR -41 221 92 273 314 25 69 chr3 145426631 145426790 -72610368 + L3b LINE CR1 1283 1434 -149 605 279 79 23 chr3 145426870 145427085 -72610073 - MIR SINE MIR -16 246 20 391 302 132 81 chr3 145427589 145427794 -72609364 + L2 LINE L2 2763 2956 -357 1979 145 0 3 chr3 145427794 145428098 -72609060 - AluSq SINE Alu -10 303 1 391 302 132 81 chr3 145428098 145428383 -72608775 + L2 LINE L2 2956 3309 -4 198 0 0 0 chr3 145428399 145428421 -72608737 + (GGGA)n Simple_repeat Simple_repeat 2 23 0 270 191 0 0 chr3 145429670 145429717 -72607441 - MIR3 SINE MIR -48 160 114 1768 145 14 10 chr3 145430045 145430342 -72606816 - AluJb SINE Alu -14 298 1 2211 102 0 0 chr3 145430449 145430744 -72606414 + AluSq SINE Alu 1 295 -18 243 0 0 0 chr3 145430786 145430813 -72606345 + (CA)n Simple_repeat Simple_repeat 2 28 0 221 189 0 0 chr3 145431323 145431360 -72605798 - MIR SINE MIR -6 256 220 333 314 67 57 chr3 145431420 145431630 -72605528 + L2 LINE L2 3097 3308 -5 459 263 70 32 chr3 145431689 145431845 -72605313 - MIR SINE MIR -54 208 47 369 262 39 0 chr3 145431993 145432096 -72605062 + MIR3 SINE MIR 88 194 -14 2641 160 5 0 chr3 145433576 145434002 -72603156 - MSTA LTR MaLR 0 428 1 1725 240 18 29 chr3 145434012 145434629 -72602529 + ERVL LTR ERVL 4525 5166 -598 403 278 0 9 chr3 145434751 145434866 -72602292 + ERVL LTR ERVL 5166 5279 -485 369 298 85 14 chr3 145435256 145435397 -72601761 + LTR50 LTR ERVL 3 153 -642 234 0 0 0 chr3 145435571 145435597 -72601561 + (TG)n Simple_repeat Simple_repeat 2 27 0 282 73 0 0 chr3 145435599 145435640 -72601518 + (GA)n Simple_repeat Simple_repeat 1 41 0 1096 263 38 8 chr3 145437381 145437746 -72599412 - MER113 DNA MER1_type? -48 473 98 788 311 75 35 chr3 145438014 145438744 -72598414 - L1MC4a LINE L1 -748 5381 5220 2096 96 14 7 chr3 145438747 145439040 -72598118 - AluSp SINE Alu -18 295 1 2180 110 3 0 chr3 145439041 145439350 -72597808 - AluSg SINE Alu 0 310 1 23 33 0 0 chr3 145439647 145439677 -72597481 + AT_rich Low_complexity Low_complexity 1 30 0 283 259 25 0 chr3 145439713 145439794 -72597364 - L1MC4a LINE L1 -1330 4799 4717 2247 99 3 0 chr3 145440014 145440326 -72596832 - AluSp SINE Alu 0 313 1 495 309 92 29 chr3 145440474 145440986 -72596172 - L1MC4a LINE L1 -1854 4275 3732 357 260 100 0 chr3 145441001 145441101 -72596057 - L2 LINE L2 -13 3300 3191 260 198 25 74 chr3 145441116 145441197 -72595961 - MLT1H LTR MaLR -37 512 436 302 151 268 9 chr3 145441216 145441324 -72595834 - L1ME3A LINE L1 0 6170 6034 264 254 0 0 chr3 145441511 145441566 -72595592 + MLT1I LTR MaLR 104 158 -251 350 267 33 106 chr3 145441892 145442107 -72595051 - L1MC4a LINE L1 -2596 3533 3304 1990 141 3 0 chr3 145442107 145442411 -72594747 - AluSx SINE Alu -7 305 1 350 267 33 106 chr3 145442411 145442836 -72594322 - L1MC4a LINE L1 -2825 3304 2940 369 0 0 0 chr3 145442902 145442943 -72594215 + (TG)n Simple_repeat Simple_repeat 2 42 0 230 178 44 0 chr3 145443073 145443163 -72593995 + (TA)n Simple_repeat Simple_repeat 1 94 0 5143 133 35 17 chr3 145443174 145444044 -72593114 - L1MC1 LINE L1 -45 6288 5404 305 284 72 95 chr3 145444056 145444278 -72592880 - L1MC4a LINE L1 -3267 2862 2646 963 186 6 0 chr3 145444349 145444516 -72592642 + FRAM SINE Alu 1 167 -9 978 189 53 97 chr3 145444518 145444878 -72592280 - LTR37B LTR ERV1 -116 352 9 1824 219 21 16 chr3 145445357 145445712 -72591446 + MER82 DNA MER2_type 11 367 -286 2007 223 17 22 chr3 145445712 145446126 -72591032 - MER65C LTR ERV1 0 461 48 581 88 0 0 chr3 145446126 145446206 -72590952 - MADE1 DNA Mariner 0 80 1 2007 223 17 22 chr3 145446206 145446254 -72590904 - MER65C LTR ERV1 -413 48 1 1377 213 33 7 chr3 145446254 145446526 -72590632 + MER82 DNA MER2_type 369 647 -6 269 281 16 33 chr3 145446791 145446912 -72590246 - HAL1b LINE L1 -923 425 307 321 298 93 80 chr3 145446994 145447296 -72589862 - L1MC4a LINE L1 -4918 1201 896 316 224 112 8 chr3 145447905 145448039 -72589119 - MER113 DNA MER1_type? -373 148 1 318 26 0 0 chr3 145450949 145450988 -72586170 + (TG)n Simple_repeat Simple_repeat 2 40 0 337 274 133 7 chr3 145451107 145451242 -72585916 + MIR SINE MIR 41 192 -70 242 322 58 16 chr3 145451399 145451520 -72585638 - MLT1H1 LTR MaLR -400 155 30 1528 246 147 46 chr3 145451583 145452484 -72584674 + L2 LINE L2 2192 3224 -89 429 216 134 0 chr3 145452484 145452581 -72584577 - MER81 DNA DNA -2 112 3 1528 246 147 46 chr3 145452581 145452682 -72584476 + L2 LINE L2 3224 3313 0 379 328 123 35 chr3 145452683 145452796 -72584362 + L2 LINE L2 2681 2783 -530 2591 111 28 14 chr3 145452796 145453155 -72584003 - THE1B LTR MaLR 0 364 1 379 328 123 35 chr3 145453155 145453575 -72583583 + L2 LINE L2 2783 3263 -50 412 259 129 0 chr3 145453760 145453876 -72583282 - MIR SINE MIR -12 250 120 599 268 66 109 chr3 145453889 145454401 -72582757 + MLT1J LTR MaLR 20 509 -2 417 309 59 7 chr3 145454707 145454859 -72582299 - MIR SINE MIR -3 259 100 967 222 12 21 chr3 145454873 145455116 -72582042 + L1M4 LINE L1 4572 4812 -1334 * 1885 138 8 70 chr3 145455097 145455481 -72581677 - L1M1 LINE L1 -597 5703 5344 439 122 12 12 chr3 145455597 145455679 -72581479 + (TCCCC)n Simple_repeat Simple_repeat 4 85 0 2024 128 0 10 chr3 145455681 145455985 -72581173 - AluSg SINE Alu -9 301 1 913 118 7 0 chr3 145455985 145456120 -72581038 - AluSq/x SINE Alu -177 136 1 1655 152 14 3 chr3 145456125 145456415 -72580743 - AluJo SINE Alu -15 297 5 496 263 98 25 chr3 145457279 145457477 -72579681 - MIR SINE MIR -50 212 6 240 206 16 32 chr3 145458661 145458724 -72578434 - MER5B DNA MER1_type -85 93 32 195 42 0 0 chr3 145458835 145458859 -72578299 + (TTCA)n Simple_repeat Simple_repeat 2 25 0 190 239 22 0 chr3 145458866 145458912 -72578246 - L2 LINE L2 -19 3294 3248 264 269 122 103 chr3 145459023 145459317 -72577841 + L2 LINE L2 2821 3108 -205 354 23 0 0 chr3 145459317 145459360 -72577798 + (TTA)n Simple_repeat Simple_repeat 1 43 0 1863 116 0 25 chr3 145459360 145459645 -72577513 - AluSg SINE Alu -32 278 1 264 269 122 103 chr3 145459645 145459832 -72577326 + L2 LINE L2 3107 3312 -1 229 167 24 0 chr3 145461961 145462003 -72575155 - MER103 DNA DNA -76 90 48 199 377 75 0 chr3 145462038 145462144 -72575014 + MIR SINE MIR 31 144 -118 2300 72 7 0 chr3 145462487 145462780 -72574378 + AluSq SINE Alu 1 295 -18 243 0 0 0 chr3 145462822 145462849 -72574309 + (CA)n Simple_repeat Simple_repeat 2 28 0 221 189 0 0 chr3 145463359 145463396 -72573762 - MIR SINE MIR -6 256 220 333 314 67 57 chr3 145463456 145463666 -72573492 + L2 LINE L2 3097 3308 -5 459 263 70 32 chr3 145463725 145463881 -72573277 - MIR SINE MIR -54 208 47 369 262 39 0 chr3 145464029 145464132 -72573026 + MIR3 SINE MIR 88 194 -14 2641 160 5 0 chr3 145465612 145466038 -72571120 - MSTA LTR MaLR 0 428 1 1725 240 18 29 chr3 145466048 145466665 -72570493 + ERVL LTR ERVL 4525 5166 -598 403 278 0 9 chr3 145466787 145466902 -72570256 + ERVL LTR ERVL 5166 5279 -485 369 298 85 14 chr3 145467292 145467433 -72569725 + LTR50 LTR ERVL 3 153 -642 234 0 0 0 chr3 145467607 145467633 -72569525 + (TG)n Simple_repeat Simple_repeat 2 27 0 282 73 0 0 chr3 145467635 145467676 -72569482 + (GA)n Simple_repeat Simple_repeat 1 41 0 1096 263 38 8 chr3 145469417 145469782 -72567376 - MER113 DNA MER1_type? -48 473 98 788 311 75 35 chr3 145470050 145470780 -72566378 - L1MC4a LINE L1 -748 5381 5220 2096 96 14 7 chr3 145470783 145471076 -72566082 - AluSp SINE Alu -18 295 1 2180 110 3 0 chr3 145471077 145471386 -72565772 - AluSg SINE Alu 0 310 1 23 33 0 0 chr3 145471683 145471713 -72565445 + AT_rich Low_complexity Low_complexity 1 30 0 283 259 25 0 chr3 145471749 145471830 -72565328 - L1MC4a LINE L1 -1330 4799 4717 2247 99 3 0 chr3 145472050 145472362 -72564796 - AluSp SINE Alu 0 313 1 495 309 92 29 chr3 145472510 145473022 -72564136 - L1MC4a LINE L1 -1854 4275 3732 357 260 100 0 chr3 145473037 145473137 -72564021 - L2 LINE L2 -13 3300 3191 260 198 25 74 chr3 145473152 145473233 -72563925 - MLT1H LTR MaLR -37 512 436 302 151 268 9 chr3 145473252 145473360 -72563798 - L1ME3A LINE L1 0 6170 6034 264 254 0 0 chr3 145473547 145473602 -72563556 + MLT1I LTR MaLR 104 158 -251 1136 288 58 101 chr3 145473782 145474143 -72563015 - L1MC4a LINE L1 -2446 3683 3308 1990 141 3 0 chr3 145474143 145474447 -72562711 - AluSx SINE Alu -7 305 1 1136 288 58 101 chr3 145474447 145474935 -72562223 - L1MC4a LINE L1 -2821 3308 2871 369 0 0 0 chr3 145474938 145474979 -72562179 + (TG)n Simple_repeat Simple_repeat 2 42 0 230 178 44 0 chr3 145475109 145475199 -72561959 + (TA)n Simple_repeat Simple_repeat 1 94 0 4101 179 35 17 chr3 145475210 145476080 -72561078 - L1MC1 LINE L1 -45 6288 5404 305 284 72 95 chr3 145476092 145476314 -72560844 - L1MC4a LINE L1 -3267 2862 2646 963 186 6 0 chr3 145476385 145476552 -72560606 + FRAM SINE Alu 1 167 -9 978 189 53 97 chr3 145476554 145476914 -72560244 - LTR37B LTR ERV1 -116 352 9 1824 219 21 16 chr3 145477398 145477753 -72559405 + MER82 DNA MER2_type 11 367 -286 1868 233 17 22 chr3 145477753 145478167 -72558991 - MER65C LTR ERV1 0 461 48 561 100 0 0 chr3 145478167 145478247 -72558911 - MADE1 DNA Mariner 0 80 1 1868 233 17 22 chr3 145478247 145478295 -72558863 - MER65C LTR ERV1 -413 48 1 1377 213 33 7 chr3 145478295 145478567 -72558591 + MER82 DNA MER2_type 369 647 -6 239 289 16 33 chr3 145478832 145478953 -72558205 - HAL1b LINE L1 -923 425 307 321 298 93 80 chr3 145479035 145479337 -72557821 - L1MC4a LINE L1 -4918 1201 896 316 224 112 8 chr3 145479946 145480080 -72557078 - MER113 DNA MER1_type? -373 148 1 318 26 0 0 chr3 145482990 145483029 -72554129 + (TG)n Simple_repeat Simple_repeat 2 40 0 337 274 133 7 chr3 145483148 145483283 -72553875 + MIR SINE MIR 41 192 -70 242 322 58 16 chr3 145483440 145483561 -72553597 - MLT1H1 LTR MaLR -400 155 30 1528 246 147 46 chr3 145483624 145484525 -72552633 + L2 LINE L2 2192 3224 -89 429 216 134 0 chr3 145484525 145484622 -72552536 - MER81 DNA DNA -2 112 3 1528 246 147 46 chr3 145484622 145484723 -72552435 + L2 LINE L2 3224 3313 0 379 328 123 35 chr3 145484724 145484837 -72552321 + L2 LINE L2 2681 2783 -530 2591 111 28 14 chr3 145484837 145485196 -72551962 - THE1B LTR MaLR 0 364 1 379 328 123 35 chr3 145485196 145485616 -72551542 + L2 LINE L2 2783 3263 -50 412 259 129 0 chr3 145485801 145485917 -72551241 - MIR SINE MIR -12 250 120 599 268 66 109 chr3 145485930 145486442 -72550716 + MLT1J LTR MaLR 20 509 -2 417 309 59 7 chr3 145486748 145486900 -72550258 - MIR SINE MIR -3 259 100 967 222 12 21 chr3 145486914 145487157 -72550001 + L1ME1 LINE L1 4572 4812 -1334 * 6508 159 17 24 chr3 145487138 145488720 -72548438 - L1M1 LINE L1 -597 5703 4135 479 202 0 19 chr3 145488720 145488824 -72548334 + L1ME1 LINE L1 4844 4945 -1201 1954 118 7 0 chr3 145488881 145489168 -72547990 + AluSx SINE Alu 1 289 -23 1391 51 8 19 chr3 145489172 145489423 -72547735 + (GAAA)n Simple_repeat Simple_repeat 1 249 0 3092 203 11 24 chr3 145489442 145490482 -72546676 + L1ME1 LINE L1 4972 6000 -166 2022 90 38 7 chr3 145490569 145490878 -72546280 - AluSq SINE Alu 0 313 1 1768 66 4 0 chr3 145490883 145491143 -72546015 - AluY SINE Alu 0 312 52 335 241 221 46 chr3 145491949 145492144 -72545014 - L2 LINE L2 -1 3312 3084 1094 231 49 81 chr3 145493268 145493338 -72543820 + MLT1E LTR MaLR 219 290 -303 1730 142 12 70 chr3 145493338 145493668 -72543490 + AluSx SINE Alu 1 311 -1 1094 231 49 81 chr3 145493668 145493982 -72543176 + MLT1E LTR MaLR 290 591 -2 445 248 8 43 chr3 145493983 145494100 -72543058 - L2 LINE L2 -30 3283 3171 1097 207 123 46 chr3 145494114 145494239 -72542919 + MLT1A1 LTR MaLR 17 131 -234 2229 96 0 0 chr3 145494239 145494541 -72542617 + AluY SINE Alu 1 302 -9 1097 207 123 46 chr3 145494541 145494739 -72542419 + MLT1A1 LTR MaLR 131 365 0 566 239 35 14 chr3 145494805 145494947 -72542211 - L2 LINE L2 -223 3090 2946 370 354 120 6 chr3 145495956 145496131 -72541027 + L1MEc LINE L1 1641 1835 -4561 448 252 87 43 chr3 145496140 145496187 -72540971 + L1MEc LINE L1 1874 1918 -4297 1893 124 7 3 chr3 145496187 145496490 -72540668 + AluSq SINE Alu 1 304 0 448 252 87 43 chr3 145496490 145496605 -72540553 + L1MEc LINE L1 1918 2027 -4188 1490 186 4 0 chr3 145496605 145496880 -72540278 - AluJb SINE Alu -16 296 21 448 252 87 43 chr3 145496880 145497146 -72540012 + L1MEc LINE L1 2027 2272 -3943 505 309 22 51 chr3 145497202 145497477 -72539681 + MLT1J LTR MaLR 245 511 0 840 305 42 23 chr3 145497822 145498130 -72539028 - L2 LINE L2 -1 3312 2999 231 232 0 58 chr3 145498382 145498451 -72538707 - MIR SINE MIR -84 178 114 360 275 129 57 chr3 145499240 145499465 -72537693 - MIR SINE MIR -12 250 10 219 246 16 16 chr3 145499495 145499556 -72537602 + CT-rich Low_complexity Low_complexity 3 63 0 1039 262 124 28 chr3 145499558 145500242 -72536916 - L2 LINE L2 0 3313 2551 1528 181 0 31 chr3 145500807 145501094 -72536064 + MLT1F LTR MaLR 265 542 0 278 275 76 29 chr3 145501338 145501509 -72535649 - MIR SINE MIR -21 241 63 641 203 32 0 chr3 145501614 145501737 -72535421 - MLT2C1 LTR ERVL 0 397 271 335 198 16 32 chr3 145501739 145501865 -72535293 + (TA)n Simple_repeat Simple_repeat 1 124 0 812 192 64 32 chr3 145501873 145502123 -72535035 + Charlie2 DNA MER1_type 2514 2771 -91 372 200 0 71 chr3 145503216 145503301 -72533857 - MIR SINE MIR -115 147 69 1790 198 10 50 chr3 145503314 145503472 -72533686 + L1ME1 LINE L1 5192 5355 -809 1764 147 27 20 chr3 145503472 145503772 -72533386 - AluSx SINE Alu -10 302 1 1790 198 10 50 chr3 145503772 145504098 -72533060 + L1ME1 LINE L1 5355 5669 -495 1664 93 0 0 chr3 145504103 145504319 -72532839 + AluSx SINE Alu 1 216 -96 492 231 15 108 chr3 145504319 145504383 -72532775 + L1ME1 LINE L1 5980 6048 -118 2111 117 0 16 chr3 145504383 145504700 -72532458 + AluSx SINE Alu 1 312 0 492 231 15 108 chr3 145504700 145504838 -72532320 + L1ME1 LINE L1 6048 6163 -3 2203 95 0 0 chr3 145504875 145505170 -72531988 + AluSg SINE Alu 1 295 -15 280 176 71 47 chr3 145505615 145505700 -72531458 + MER103 DNA DNA 36 122 -44 292 252 96 59 chr3 145506531 145506666 -72530492 + HAL1 LINE L1 262 401 -2106 2967 221 108 37 chr3 145506782 145507832 -72529326 + HAL1 LINE L1 578 1701 -806 1429 276 96 30 chr3 145507834 145508429 -72528729 + HAL1 LINE L1 1726 2375 -132 2166 114 0 0 chr3 145508429 145508735 -72528423 + AluSx SINE Alu 1 306 -6 1429 276 96 30 chr3 145508735 145508839 -72528319 + HAL1 LINE L1 2375 2471 -36 457 231 147 19 chr3 145508845 145509001 -72528157 - L1ME1 LINE L1 -1 6165 5990 303 262 228 56 chr3 145509155 145509388 -72527770 + L2 LINE L2 2995 3267 -5 1862 149 13 0 chr3 145510326 145510628 -72526530 - AluSx SINE Alu -6 306 1 389 304 61 14 chr3 145512850 145512998 -72524160 + MIR SINE MIR 35 189 -73 312 27 0 0 chr3 145513363 145513400 -72523758 + (CA)n Simple_repeat Simple_repeat 2 38 0 327 25 0 0 chr3 145515730 145515770 -72521388 + (TG)n Simple_repeat Simple_repeat 2 41 0 403 264 138 31 chr3 145516549 145516708 -72520450 - MIR SINE MIR -79 183 8 377 293 27 72 chr3 145517871 145518093 -72519065 + L3b LINE CR1 1338 1549 -34 396 258 135 6 chr3 145518221 145518384 -72518774 - L2 LINE L2 -508 2806 2623 253 287 115 11 chr3 145519766 145519853 -72517305 - MIR SINE MIR -151 111 16 30 27 0 0 chr3 145520358 145520395 -72516763 + AT_rich Low_complexity Low_complexity 1 37 0 243 353 66 0 chr3 145524692 145524828 -72512330 + MIR SINE MIR 48 192 -70 793 234 20 5 chr3 145525175 145525372 -72511786 - MER3 DNA MER1_type -1 208 9 224 282 194 16 chr3 145526271 145526395 -72510763 + MIR SINE MIR 43 188 -74 2317 96 10 0 chr3 145527118 145527409 -72509749 - AluSx SINE Alu -18 294 1 291 306 0 0 chr3 145527570 145527655 -72509503 - MER94 DNA DNA 0 134 50 28 0 0 0 chr3 145532396 145532424 -72504734 + AT_rich Low_complexity Low_complexity 1 28 0 440 106 43 0 chr3 145534714 145534795 -72502363 - L1MB7 LINE L1 0 6174 6090 853 215 12 0 chr3 145535158 145535330 -72501828 - MER69A DNA AcHobo 0 177 4 421 269 23 58 chr3 145537974 145538145 -72499013 - L2 LINE L2 -7 3306 3142 228 196 0 0 chr3 145538146 145538192 -72498966 - MER5C DNA MER1_type 0 324 279 200 167 0 0 chr3 145538257 145538293 -72498865 - MER5C DNA MER1_type -212 112 77 365 265 85 85 chr3 145538324 145538524 -72498634 - L2 LINE L2 -162 3151 2952 200 348 24 12 chr3 145539036 145539200 -72497958 + (CA)n Simple_repeat Simple_repeat 1 166 0 687 246 70 10 chr3 145539839 145540058 -72497100 - MIR SINE MIR -13 249 20 1051 173 204 4 chr3 145540092 145540347 -72496811 + L1MC3 LINE L1 7479 7784 -1 2691 221 32 26 chr3 145540731 145541455 -72495703 - L1M4 LINE L1 -1690 4456 3729 256 333 50 0 chr3 145541455 145541575 -72495583 + L2 LINE L2 3146 3271 -1 353 258 11 0 chr3 145542102 145542195 -72494963 + MIR SINE MIR 169 262 0 323 295 19 0 chr3 145543223 145543328 -72493830 + L1ME4a LINE L1 5687 5793 -328 642 257 29 24 chr3 145543380 145543586 -72493572 + MER102b DNA MER1_type 87 293 -48 309 349 0 54 chr3 145543626 145543792 -72493366 + L2 LINE L2 2936 3092 -180 3243 191 69 24 chr3 145543840 145544592 -72492566 + L1MC4a LINE L1 7023 7808 0 320 319 12 89 chr3 145544609 145544778 -72492380 + L2 LINE L2 3117 3272 0 247 294 82 64 chr3 145544780 145544947 -72492211 + L1ME4a LINE L1 5835 5998 -123 2490 84 3 0 chr3 145544947 145545258 -72491900 + AluSp SINE Alu 2 313 0 247 294 82 64 chr3 145545258 145545306 -72491852 + L1ME4a LINE L1 5998 6044 -77 2066 131 9 37 chr3 145545306 145545627 -72491531 - AluSx SINE Alu 0 312 1 247 294 82 64 chr3 145545627 145545692 -72491466 + L1ME4a LINE L1 6044 6121 0 2028 181 63 25 chr3 145545946 145546388 -72490770 - MLT1C LTR MaLR 0 467 9 1575 206 65 74 chr3 145546410 145546964 -72490194 - MLT1H LTR MaLR 0 549 1 293 268 219 47 chr3 145547824 145548167 -72488991 + MLT1K LTR MaLR 187 588 0 195 282 214 0 chr3 145548179 145548282 -72488876 - L2 LINE L2 -16 3297 3173 244 208 108 67 chr3 145549571 145549691 -72487467 + L2 LINE L2 3146 3270 -2 2381 91 7 0 chr3 145551978 145552276 -72484882 - AluSc SINE Alu -9 300 1 199 310 17 0 chr3 145552619 145552677 -72484481 - MIR SINE MIR -118 144 86 298 268 119 89 chr3 145554931 145555099 -72482059 - L2 LINE L2 -1 3271 3099 2011 116 0 25 chr3 145555118 145555403 -72481755 + AluSg SINE Alu 1 278 -32 354 23 0 0 chr3 145555403 145555446 -72481712 + (TAA)n Simple_repeat Simple_repeat 1 43 0 298 267 0 30 chr3 145555614 145555715 -72481443 + (CAGAG)n Simple_repeat Simple_repeat 3 100 0 195 42 0 0 chr3 145555904 145555928 -72481230 + (TGAA)n Simple_repeat Simple_repeat 2 25 0 224 206 16 32 chr3 145556039 145556102 -72481056 + MER5B DNA MER1_type 32 93 -85 473 290 93 20 chr3 145557285 145557483 -72479675 + MIR SINE MIR 6 212 -50 1809 152 14 3 chr3 145558347 145558637 -72478521 + AluJo SINE Alu 5 297 -15 958 126 7 0 chr3 145558642 145558777 -72478381 + AluSq/x SINE Alu 1 136 -176 1874 120 4 12 chr3 145558777 145559035 -72478123 + AluSg SINE Alu 1 256 -54 366 326 71 0 chr3 145559109 145559250 -72477908 + LTR50 LTR ERVL 3 153 -642 234 0 0 0 chr3 145559424 145559450 -72477708 + (TG)n Simple_repeat Simple_repeat 2 27 0 282 73 0 0 chr3 145559452 145559493 -72477665 + (GA)n Simple_repeat Simple_repeat 1 41 0 495 167 0 0 chr3 145560242 145560332 -72476826 + GA-rich Low_complexity Low_complexity 2 91 0 1215 135 25 108 chr3 145560431 145560756 -72476402 + L1MA8 LINE L1 5994 6291 0 282 340 75 25 chr3 145561178 145561337 -72475821 - MIR SINE MIR -75 187 21 295 279 93 37 chr3 145561431 145561592 -72475566 - L1ME4a LINE L1 -219 5902 5733 600 241 14 0 chr3 145563554 145563695 -72473463 + MER5B DNA MER1_type 36 178 0 251 347 55 60 chr3 145563735 145564101 -72473057 + L2 LINE L2 2903 3266 -6 276 336 146 48 chr3 145565215 145565545 -72471613 - LTR16A LTR ERVL -9 441 80 2086 95 0 21 chr3 145565569 145565876 -72471282 - AluSc SINE Alu 0 302 2 937 256 65 37 chr3 145566276 145566628 -72470530 + L1MC4a LINE L1 5254 5615 -2193 762 242 135 9 chr3 145566635 145566850 -72470308 + MIR SINE MIR 2 243 -19 693 220 69 41 chr3 145566857 145567102 -72470056 + L1MC4a LINE L1 5595 5801 -365 669 222 188 41 chr3 145567157 145567450 -72469708 + MER46C DNA MER2_type 1 336 -2 2606 62 0 3 chr3 145567548 145567855 -72469303 + AluSc SINE Alu 1 306 -3 239 317 48 0 chr3 145568132 145568277 -72468881 - L1MC/D LINE L1 -1898 5910 5759 480 289 19 6 chr3 145568717 145568873 -72468285 + HAL1 LINE L1 1339 1496 -1011 739 253 30 56 chr3 145669067 145669300 -72367858 + MIR SINE MIR 33 259 -3 231 79 0 26 chr3 145670044 145670082 -72367076 - MIR SINE MIR -140 68 32 2362 70 3 0 chr3 145670094 145670392 -72366766 - AluY SINE Alu -12 299 1 423 256 25 41 chr3 145672726 145672847 -72364311 + L2 LINE L2 3195 3313 0 466 313 37 60 chr3 145674229 145674683 -72362475 + LTR67 LTR ERVL 114 557 0 530 298 21 5 chr3 145678548 145678739 -72358419 + MER117 DNA MER1_type 1 194 -3 183 80 0 0 chr3 145679044 145679069 -72358089 + (A)n Simple_repeat Simple_repeat 1 25 0 258 305 63 0 chr3 145679587 145679682 -72357476 + L2 LINE L2 3169 3269 -3 2042 184 21 43 chr3 145679702 145680170 -72356988 + MLT1C LTR MaLR 8 465 -2 356 213 13 0 chr3 145680229 145680304 -72356854 + MER96 DNA MER1_type? 9 84 -91 439 267 82 7 chr3 145680359 145680494 -72356664 - MIR3 SINE MIR -10 198 54 213 273 93 65 chr3 145680715 145680854 -72356304 + MIR3 SINE MIR 64 206 -2 2211 181 51 31 chr3 145681237 145681685 -72355473 + MSTB2 LTR MaLR 1 457 0 239 213 19 19 chr3 145682291 145682399 -72354759 + CT-rich Low_complexity Low_complexity 1 108 0 412 355 176 23 chr3 145682402 145682658 -72354500 - L2 LINE L2 -22 3250 2956 6243 96 14 17 chr3 145682987 145683486 -72353672 - L1PA11 LINE L1 0 6174 5676 2340 82 0 3 chr3 145683486 145683789 -72353369 - AluY SINE Alu -9 302 1 6243 96 14 17 chr3 145683789 145684185 -72352973 - L1PA11 LINE L1 -498 5676 5281 1055 179 5 23 chr3 145684211 145684429 -72352729 - L1PA11 LINE L1 -1288 4858 4645 253 236 22 11 chr3 145685073 145685162 -72351996 - L1MC4 LINE L1 -1339 6703 6614 * 256 281 0 0 chr3 145685154 145685243 -72351915 + L1MC4 LINE L1 6614 6702 -1340 230 292 0 0 chr3 145685285 145685374 -72351784 - L1MC4 LINE L1 -1339 6703 6615 * 241 241 72 0 chr3 145685297 145685380 -72351778 + L1MC4 LINE L1 6614 6702 -1340 213 139 28 0 chr3 145685381 145685417 -72351741 + (CATATA)n Simple_repeat Simple_repeat 6 42 0 2137 101 0 25 chr3 145685496 145685813 -72351345 + L1P LINE L1 3993 4301 -1845 809 220 127 43 chr3 145685882 145686205 -72350953 + HAL1 LINE L1 2158 2507 0 955 274 113 63 chr3 145686213 145686467 -72350691 - L2 LINE L2 -624 2690 2450 486 236 93 6 chr3 145686467 145686628 -72350530 + MER96 DNA MER1_type 1 175 0 955 274 113 63 chr3 145686628 145687037 -72350121 - L2 LINE L2 -864 2450 1994 331 241 72 0 chr3 145687337 145687420 -72349738 - L2 LINE L2 -2 3270 3182 699 271 73 63 chr3 145688613 145689026 -72348132 + Tigger8 DNA MER2_type 100 516 -150 609 304 111 15 chr3 145689289 145689559 -72347599 - L3 LINE CR1 -193 1384 1089 353 259 122 61 chr3 145689559 145689806 -72347352 + L1ME4a LINE L1 5576 5837 -284 234 240 0 0 chr3 145689844 145689894 -72347264 + (CA)n Simple_repeat Simple_repeat 2 51 0 214 355 0 0 chr3 145690058 145690120 -72347038 - L3 LINE CR1 -473 1104 1043 223 279 62 54 chr3 145690147 145690276 -72346882 - L3 LINE CR1 -625 952 823 611 210 25 49 chr3 145690601 145690763 -72346395 + MIR SINE MIR 71 228 -34 263 246 0 0 chr3 145691653 145691710 -72345448 + (CA)n Simple_repeat Simple_repeat 2 58 0 646 277 60 81 chr3 145693059 145693579 -72343579 - MLT1J LTR MaLR 0 511 3 324 212 15 0 chr3 145693775 145693841 -72343317 + MER81 DNA DNA 47 113 -1 935 228 47 5 chr3 145693896 145694107 -72343051 + Charlie1b DNA MER1_type 3 222 -301 3033 41 0 8 chr3 145694109 145694474 -72342684 + L1PA5 LINE L1 5786 6147 -7 25 0 0 0 chr3 145694474 145694499 -72342659 + AT_rich Low_complexity Low_complexity 1 25 0 1603 140 33 0 chr3 145694581 145694824 -72342334 + AluSg SINE Alu 1 251 -59 401 202 64 9 chr3 145695075 145695184 -72341974 - L1MC5 LINE L1 -108 7853 7739 2014 121 0 0 chr3 145695619 145695899 -72341259 + AluJb SINE Alu 10 289 -23 416 271 117 61 chr3 145698392 145698606 -72338552 + MIR SINE MIR 2 227 -35 223 388 18 12 chr3 145700035 145700200 -72336958 + L2 LINE L2 2035 2200 -1114 362 159 142 35 chr3 145700379 145700492 -72336666 + MIR SINE MIR 124 248 -14 224 330 88 33 chr3 145700529 145700744 -72336414 + L2 LINE L2 2245 2471 -843 1713 187 83 90 chr3 145700823 145701411 -72335747 + L1MB5 LINE L1 5585 6168 -6 273 57 0 0 chr3 145702514 145702549 -72334609 + (T)n Simple_repeat Simple_repeat 1 35 0 863 250 16 0 chr3 145702923 145703107 -72334051 + MER5A DNA MER1_type 3 189 0 200 289 89 11 chr3 145703436 145703526 -72333632 + L2 LINE L2 3177 3273 -40 238 349 67 11 chr3 145703740 145703920 -72333238 + MIR SINE MIR 17 204 -58 455 198 71 71 chr3 145703920 145704046 -72333112 - LTR16C LTR ERVL -4 487 362 2218 97 0 0 chr3 145704171 145704470 -72332688 + AluSg SINE Alu 1 299 -11 383 313 11 82 chr3 145704810 145704923 -72332235 + L2 LINE L2 3104 3223 -49 7317 48 1 11 chr3 145704923 145706338 -72330820 + L1PA6 LINE L1 4745 6154 0 3013 59 5 0 chr3 145706338 145706710 -72330448 + L1PA6 LINE L1 5770 6143 -11 383 313 11 82 chr3 145706710 145706777 -72330381 + L2 LINE L2 3221 3272 0 635 332 0 5 chr3 145706910 145707124 -72330034 + L1MEc LINE L1 36 248 -6148 672 188 24 36 chr3 145707183 145707348 -72329810 + L1MA10 LINE L1 6171 6333 -1 1517 157 0 11 chr3 145707437 145707698 -72329460 + AluJo SINE Alu 1 258 -54 2005 201 22 8 chr3 145708935 145709303 -72327855 - MER70B LTR ERVL -102 476 104 1179 178 61 36 chr3 145709303 145709654 -72327504 - MSTD LTR MaLR 0 396 1 718 148 0 9 chr3 145709655 145709763 -72327395 - MER70B LTR ERVL -471 107 1 243 0 0 0 chr3 145710240 145710267 -72326891 + (CA)n Simple_repeat Simple_repeat 1 27 0 2206 86 0 0 chr3 145711658 145711997 -72325161 + AluY SINE Alu 1 311 0 310 284 29 10 chr3 145712286 145712388 -72324770 + HAL1b LINE L1 827 930 -418 881 298 117 5 chr3 145712561 145712971 -72324187 - L1ME3A LINE L1 -224 5946 5491 * 2400 173 42 13 chr3 145712958 145713479 -72323679 - L1M4 LINE L1 -378 5806 5271 1211 161 18 44 chr3 145713479 145713753 -72323405 - L1PB2 LINE L1 0 6151 5885 1976 121 86 0 chr3 145713759 145713973 -72323185 + L1PB1 LINE L1 5552 5803 -348 366 23 0 0 chr3 145713973 145714016 -72323142 + (TG)n Simple_repeat Simple_repeat 1 43 0 1976 121 86 0 chr3 145714016 145714116 -72323042 + L1PB1 LINE L1 5803 5893 -258 229 241 84 0 chr3 145714107 145714190 -72322968 - L1ME3A LINE L1 -663 5503 5414 * 452 286 115 70 chr3 145714191 145714684 -72322474 + MLT1H1 LTR MaLR 3 514 -41 1900 286 115 37 chr3 145714721 145716405 -72320753 - L1ME3A LINE L1 -747 5399 3586 2636 204 2 2 chr3 145716509 145716964 -72320194 - MER82 DNA MER2_type 0 653 199 232 341 15 15 chr3 145717241 145717373 -72319785 + Tigger2 DNA MER2_type 1060 1191 -1527 604 235 83 0 chr3 145717428 145717560 -72319598 - MER82 DNA MER2_type -510 143 1 1456 234 23 14 chr3 145717835 145718189 -72318969 - L1MD2 LINE L1 -409 5950 5594 413 279 84 14 chr3 145718180 145718395 -72318763 - L1MD2 LINE L1 -1945 4201 3972 * 1754 179 62 29 chr3 145718398 145718783 -72318375 - MLT1C LTR MaLR -7 460 63 291 322 17 70 chr3 145718861 145718977 -72318181 - HAL1b LINE L1 -972 376 255 1342 254 113 31 chr3 145718977 145719457 -72317701 + LTR40a LTR ERVL 1 519 0 291 322 17 70 chr3 145719457 145719697 -72317461 - HAL1b LINE L1 -1093 255 39 216 254 0 0 chr3 145720429 145720484 -72316674 + CT-rich Low_complexity Low_complexity 4 58 0 1021 289 73 19 chr3 145720708 145721403 -72315755 - L1MD2 LINE L1 -3213 2933 2201 489 249 67 84 chr3 145721563 145721788 -72315370 + HAL1b LINE L1 954 1174 -174 250 158 50 73 chr3 145722026 145722141 -72315017 + MER53 DNA DNA 1 184 -5 370 336 7 21 chr3 145722465 145722605 -72314553 + MIR SINE MIR 20 157 -105 557 242 145 45 chr3 145722797 145723128 -72314030 + L1MC4a LINE L1 5786 6149 -1659 28 61 0 0 chr3 145723135 145723184 -72313974 + AT_rich Low_complexity Low_complexity 1 49 0 225 139 0 0 chr3 145723241 145723284 -72313874 + (TG)n Simple_repeat Simple_repeat 2 44 0 250 262 19 19 chr3 145723735 145723838 -72313320 - L1ME4a LINE L1 -73 6048 5946 280 333 95 16 chr3 145723943 145724069 -72313089 + L2 LINE L2 3137 3272 0 548 306 56 60 chr3 145724080 145724563 -72312595 - L1ME4a LINE L1 -344 5777 5297 508 192 24 154 chr3 145724679 145724887 -72312271 - L1MC5 LINE L1 -50 7911 7731 465 62 0 0 chr3 145726074 145726139 -72311019 + (TG)n Simple_repeat Simple_repeat 2 66 0 410 306 15 0 chr3 145726990 145727124 -72310034 + Charlie8 DNA MER1_type 88 223 -2194 1662 180 41 86 chr3 145727211 145727745 -72309413 - MER69 DNA AcHobo 0 2526 2017 2482 265 73 6 chr3 145727799 145728496 -72308662 - MER69 DNA AcHobo -1782 744 1 678 261 95 49 chr3 145729157 145729441 -72307717 - MLT1H LTR MaLR -252 297 1 716 325 77 11 chr3 145729544 145729830 -72307328 + L3 LINE CR1 498 802 -775 200 206 0 0 chr3 145729848 145729882 -72307276 - L2 LINE L2 -16 3256 3223 8923 208 24 21 chr3 145729959 145733128 -72304030 + L1MB8 LINE L1 3079 6178 0 301 250 240 10 chr3 145733172 145733276 -72303882 - MER5A DNA MER1_type -1 188 61 1012 102 0 29 chr3 145733277 145733414 -72303744 + FLAM_C SINE Alu 1 133 0 277 309 62 12 chr3 145733492 145733573 -72303585 - MIR SINE MIR -154 108 24 734 302 76 67 chr3 145733582 145734121 -72303037 + L3 LINE CR1 858 1401 -176 1353 276 16 26 chr3 145734136 145734600 -72302558 - MLT1K LTR MaLR -33 555 47 308 247 21 75 chr3 145734635 145734728 -72302430 + L3 LINE CR1 1398 1485 -92 195 69 0 0 chr3 145737035 145737064 -72300094 + (A)n Simple_repeat Simple_repeat 1 29 0 358 256 23 0 chr3 145738144 145738230 -72298928 + L1MC5 LINE L1 7812 7899 -62 34 0 0 0 chr3 145738253 145738287 -72298871 + AT_rich Low_complexity Low_complexity 1 34 0 320 265 29 0 chr3 145738343 145738411 -72298747 + MER5A DNA MER1_type 11 80 -109 661 246 10 46 chr3 145738634 145738829 -72298329 - MIR SINE MIR -19 243 56 589 284 142 17 chr3 145738979 145739324 -72297834 - MLT1L LTR MaLR -102 513 126 2853 222 160 89 chr3 145739671 145740526 -72296632 + HAL1 LINE L1 574 1367 -1140 2205 116 30 0 chr3 145740526 145740829 -72296329 + AluSx SINE Alu 1 312 0 2853 222 160 89 chr3 145740829 145741560 -72295598 + HAL1 LINE L1 1367 2306 -201 2256 110 3 3 chr3 145741560 145741869 -72295289 + AluSc SINE Alu 1 309 0 2853 222 160 89 chr3 145741869 145742084 -72295074 + HAL1 LINE L1 2306 2504 -3 661 225 12 19 chr3 145743980 145744140 -72293018 - AluJb SINE Alu -152 160 2 306 306 148 22 chr3 145744224 145744453 -72292705 + L3 LINE CR1 1138 1395 -182 332 176 44 15 chr3 145744753 145744821 -72292337 - MLT1L LTR MaLR -543 72 3 200 207 172 0 chr3 145744850 145744908 -72292250 - MIR SINE MIR -118 144 77 196 312 132 39 chr3 145744994 145745433 -72291725 - L2 LINE L2 -798 2516 2037 201 236 348 0 chr3 145745685 145745774 -72291384 + L2 LINE L2 3153 3272 0 342 233 30 53 chr3 145745885 145746018 -72291140 - MLT1C LTR MaLR 0 467 338 2550 162 122 2 chr3 145746285 145746736 -72290422 + MLT1D LTR MaLR 1 505 0 552 291 110 18 chr3 145747274 145747501 -72289657 - MIR SINE MIR 0 262 15 2728 13 0 3 chr3 145747545 145747849 -72289309 - AluY SINE Alu -8 303 1 229 239 16 50 chr3 145748153 145748248 -72288910 - MIR SINE MIR -84 124 38 2074 189 12 52 chr3 145749901 145750304 -72286854 + MLT1B LTR MaLR 3 389 -1 220 139 23 0 chr3 145750335 145750378 -72286780 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 1967 61 4 12 chr3 145750573 145750818 -72286340 - L1PA4 LINE L1 -2 6153 5911 196 308 192 7 chr3 145750979 145751125 -72286033 - MIR SINE MIR -11 251 79 22 0 0 0 chr3 145751895 145751917 -72285241 + AT_rich Low_complexity Low_complexity 1 22 0 1058 200 11 0 chr3 145752479 145752664 -72284494 - MER5A DNA MER1_type 0 189 3 444 276 75 95 chr3 145752756 145753209 -72283949 - L2 LINE L2 0 3272 2829 471 142 372 0 chr3 145753249 145753362 -72283796 + MER5A DNA MER1_type 1 155 -34 600 281 113 0 chr3 145754966 145755126 -72282032 + MER45A DNA AcHobo 1 178 0 186 279 23 0 chr3 145755246 145755289 -72281869 - L2 LINE L2 -12 3260 3217 456 317 76 23 chr3 145755327 145755753 -72281405 - L2 LINE L2 -166 3106 2660 907 249 188 38 chr3 145756174 145756547 -72280611 + MLT1E3 LTR MaLR 1 429 -195 725 194 54 38 chr3 145756686 145756872 -72280286 + MER5A DNA MER1_type 1 189 0 501 273 64 29 chr3 145756886 145757058 -72280100 + MER5B DNA MER1_type 1 178 0 263 411 44 11 chr3 145757648 145757828 -72279330 - MER5A DNA MER1_type -3 186 1 1442 67 10 10 chr3 145758747 145758940 -72278218 + L1PA7 LINE L1 5791 5983 -171 830 200 14 0 chr3 145758940 145759085 -72278073 - MER5A DNA MER1_type -40 149 3 1115 125 16 62 chr3 145759109 145759301 -72277857 + L1PA6 LINE L1 5972 6154 0 182 108 54 0 chr3 145759975 145760012 -72277146 + C-rich Low_complexity Low_complexity 3 41 0 492 275 53 89 chr3 145761214 145761516 -72275642 + L2 LINE L2 3015 3305 -8 1107 245 108 6 chr3 145762333 145762656 -72274502 + LTR16C LTR ERVL 69 424 -67 1253 258 40 35 chr3 145762665 145763061 -72274097 - LTR16A1 LTR ERVL -11 446 49 265 141 14 0 chr3 145763104 145763157 -72274001 + LTR16C LTR ERVL 378 474 -17 1313 165 116 0 chr3 145763750 145764017 -72273141 - MER33 DNA MER1_type -16 308 11 198 390 113 13 chr3 145764579 145764879 -72272279 - L3 LINE CR1 -881 696 367 2235 95 16 10 chr3 145765101 145765407 -72271751 - AluSg SINE Alu -2 308 1 2210 117 3 0 chr3 145765590 145765889 -72271269 - AluSq SINE Alu -13 300 1 225 241 0 0 chr3 145765893 145765951 -72271207 - L1MC/D LINE L1 -1985 5823 5766 2270 61 7 7 chr3 145766030 145766350 -72270808 - AluY SINE Alu 0 320 1 506 306 86 10 chr3 145766791 145767000 -72270158 - L1ME3A LINE L1 -331 5822 5598 479 252 0 26 chr3 145767034 145767149 -72270009 + MLT1J2 LTR MaLR 27 138 -312 645 270 76 17 chr3 145767448 145767737 -72269421 - L1ME3A LINE L1 -544 5603 5298 1264 201 89 0 chr3 145767747 145768016 -72269142 - L1MB4 LINE L1 -3 6177 5885 642 158 59 0 chr3 145768019 145768120 -72269038 - U6 snRNA snRNA 0 107 1 832 272 127 16 chr3 145768138 145768949 -72268209 - L1ME3A LINE L1 -844 5285 4357 947 188 62 10 chr3 145768949 145769157 -72268001 + L1PA16 LINE L1 5948 6166 0 1053 304 45 19 chr3 145769185 145769652 -72267506 - L1ME3A LINE L1 -1793 4336 3858 252 274 18 85 chr3 145769750 145769914 -72267244 - L1ME3A LINE L1 -2580 3549 3397 931 289 111 26 chr3 145770223 145770947 -72266211 - L1ME3A LINE L1 -3114 3015 2231 806 11 0 0 chr3 145770958 145771048 -72266110 - 5S rRNA rRNA -31 90 1 416 294 72 55 chr3 145771522 145772223 -72264935 - L1MEd LINE L1 -4653 1657 896 1108 331 83 24 chr3 145772328 145772951 -72264207 - L1MEd LINE L1 -5455 664 5 404 63 32 0 chr3 145773052 145773115 -72264043 + (TTC)n Simple_repeat Simple_repeat 2 180 0 2334 116 3 0 chr3 145773115 145773427 -72263731 - AluSx SINE Alu 0 376 1 238 169 17 34 chr3 145773498 145773557 -72263601 + CT-rich Low_complexity Low_complexity 4 61 0 32 26 0 0 chr3 145773623 145773662 -72263496 + AT_rich Low_complexity Low_complexity 1 39 0 5025 170 31 28 chr3 145773995 145775470 -72261688 + L1MA9 LINE L1 4297 5766 -546 215 31 31 0 chr3 145775470 145775502 -72261656 + (CA)n Simple_repeat Simple_repeat 2 34 0 5025 170 31 28 chr3 145775502 145775622 -72261536 + L1MA9 LINE L1 5766 5884 -428 2383 90 0 0 chr3 145775622 145775922 -72261236 - AluSq SINE Alu -13 300 1 5025 170 31 28 chr3 145775922 145776060 -72261098 + L1MA9 LINE L1 5884 6052 -260 316 314 37 42 chr3 145776708 145776899 -72260259 - L1MEd LINE L1 -5017 1102 913 323 316 45 30 chr3 145778002 145778135 -72259023 + L2 LINE L2 3137 3271 -1 319 176 0 0 chr3 145778455 145778506 -72258652 - L1MC4 LINE L1 -1339 6703 6653 263 324 37 0 chr3 145778517 145778625 -72258533 + L3b LINE CR1 1354 1465 -118 2544 100 3 47 chr3 145779434 145779815 -72257343 - THE1B LTR MaLR 0 364 1 292 280 161 21 chr3 145780262 145780405 -72256753 + L2 LINE L2 3108 3270 -43 191 351 65 0 chr3 145780580 145780748 -72256410 - L2 LINE L2 -557 2757 2579 195 129 0 0 chr3 145780869 145780900 -72256258 + (TCCA)n Simple_repeat Simple_repeat 4 34 0 423 315 41 46 chr3 145782134 145782331 -72254827 - L2 LINE L2 0 3313 3118 218 182 15 0 chr3 145782866 145782932 -72254226 + (CA)n Simple_repeat Simple_repeat 1 67 0 23 33 0 0 chr3 145787812 145787842 -72249316 + AT_rich Low_complexity Low_complexity 1 30 0 390 279 120 32 chr3 145787957 145788115 -72249043 - MER5A DNA MER1_type -1 188 17 184 273 152 40 chr3 145788147 145788246 -72248912 + MER5A DNA MER1_type 58 167 -22 * 185 257 67 44 chr3 145788161 145788280 -72248878 - MER5B DNA MER1_type -64 114 1 932 191 16 46 chr3 145788288 145788482 -72248676 - MIR SINE MIR -67 195 8 1096 60 0 8 chr3 145789648 145789781 -72247377 + AluY SINE Alu 1 132 -179 473 106 0 0 chr3 145789794 145789860 -72247298 + Alu SINE Alu 238 303 -9 299 261 188 23 chr3 145791082 145791298 -72245860 - MIR SINE MIR -8 254 4 296 29 0 0 chr3 145791566 145791600 -72245558 + (T)n Simple_repeat Simple_repeat 1 34 0 2668 96 3 3 chr3 145791610 145791965 -72245193 - THE1A LTR MaLR 0 355 1 535 286 54 92 chr3 145793178 145793549 -72243609 + L2 LINE L2 2916 3272 0 1028 270 76 25 chr3 145793608 145794109 -72243049 + MLT1G1 LTR MaLR 10 593 -2 367 255 170 49 chr3 145794201 145794448 -72242710 - L2 LINE L2 0 3313 3037 344 274 97 8 chr3 145794502 145794626 -72242532 + L3 LINE CR1 1346 1480 -97 341 237 68 68 chr3 145794738 145794856 -72242302 - L2 LINE L2 -18 3254 3137 360 64 0 0 chr3 145794988 145795035 -72242123 + (TG)n Simple_repeat Simple_repeat 1 47 0 656 218 48 0 chr3 145795155 145795320 -72241838 - LTR33 LTR ERVL 0 521 349 528 285 94 34 chr3 145795351 145795618 -72241540 - LTR33 LTR ERVL -238 283 1 813 296 37 42 chr3 145795624 145796002 -72241156 - MLT1K LTR MaLR -193 395 20 302 306 32 75 chr3 145797337 145797523 -72239635 - MIR3 SINE MIR -7 201 24 306 0 0 0 chr3 145797772 145797806 -72239352 + (TG)n Simple_repeat Simple_repeat 2 35 0 725 163 0 123 chr3 145798686 145798738 -72238420 - MER106A DNA MER1_type 0 236 179 2239 101 30 0 chr3 145798738 145799034 -72238124 - AluSx SINE Alu -7 305 1 725 163 0 123 chr3 145799034 145799208 -72237950 - MER106A DNA MER1_type -57 179 38 2957 217 82 18 chr3 145799629 145800443 -72236715 - L1ME1 LINE L1 -5 6161 5296 289 224 0 15 chr3 145801500 145801567 -72235591 + L2 LINE L2 3206 3271 -1 350 297 22 0 chr3 145802354 145802445 -72234713 + MER5A DNA MER1_type 9 101 -88 489 284 33 58 chr3 145802545 145802907 -72234251 + L1MC4 LINE L1 7596 7948 -94 464 252 0 7 chr3 145802946 145803093 -72234065 + L1MC4 LINE L1 7897 8042 0 318 188 47 0 chr3 145803116 145803180 -72233978 - L1ME LINE L1 -517 5604 5538 2343 96 3 34 chr3 145803566 145803888 -72233270 - AluSx SINE Alu 0 312 1 420 268 127 13 chr3 145803916 145804073 -72233085 + MIR SINE MIR 34 208 -54 345 229 64 9 chr3 145804537 145804646 -72232512 + MER96B DNA MER1_type? 8 122 -295 337 204 76 65 chr3 145805042 145805181 -72231977 + MIR SINE MIR 32 185 -23 2714 133 46 50 chr3 145805875 145806378 -72230780 - L1PB1 LINE L1 -3 6148 5648 367 302 24 32 chr3 145806958 145807084 -72230074 + MIR SINE MIR 128 252 -10 370 264 36 0 chr3 145807423 145807533 -72229625 - MLT1J2 LTR MaLR -4 446 333 198 167 0 0 chr3 145807892 145807928 -72229230 + CT-rich Low_complexity Low_complexity 1 36 0 202 237 129 0 chr3 145808191 145808284 -72228874 + L2 LINE L2 2849 2953 -360 1931 204 45 61 chr3 145808338 145808866 -72228292 - MLT2B1 LTR ERVL 0 520 1 241 250 62 0 chr3 145810457 145810521 -72226637 + MIR SINE MIR 124 191 -71 286 286 39 0 chr3 145811018 145811095 -72226063 - MIR SINE MIR -70 192 113 216 0 0 0 chr3 145811620 145811644 -72225514 + (T)n Simple_repeat Simple_repeat 1 24 0 1178 243 111 104 chr3 145811990 145812578 -72224580 + MLT1F1 LTR MaLR 4 595 0 483 325 255 3 chr3 145812886 145813231 -72223927 - L3 LINE CR1 -850 727 296 2298 101 0 39 chr3 145813453 145813761 -72223397 + AluSg SINE Alu 1 296 -14 223 326 73 54 chr3 145813814 145814075 -72223083 - L3b LINE CR1 -186 1397 1132 241 235 0 0 chr3 145814633 145814684 -72222474 - MIR SINE MIR -109 153 103 705 280 171 14 chr3 145816442 145816856 -72220302 + MLT1K LTR MaLR 88 566 -22 185 204 0 45 chr3 145816972 145817016 -72220142 + L2 LINE L2 1168 1209 -2105 326 281 69 11 chr3 145817557 145817686 -72219472 - MIR SINE MIR -62 146 45 2392 74 21 18 chr3 145818711 145819047 -72218111 - L1PA8A LINE L1 0 6131 5795 411 300 62 8 chr3 145820292 145820422 -72216736 - L2 LINE L2 0 3272 3136 252 176 59 0 chr3 145820507 145820558 -72216600 - L2 LINE L2 -556 2758 2705 546 306 120 18 chr3 145821315 145821590 -72215568 - L2 LINE L2 -838 2476 2174 249 286 191 0 chr3 145822404 145822509 -72214649 - MIR SINE MIR -16 246 122 28 29 0 0 chr3 145823334 145823369 -72213789 + AT_rich Low_complexity Low_complexity 1 35 0 239 200 0 0 chr3 145823659 145823704 -72213454 + MLT1K LTR MaLR 168 212 -376 248 137 39 20 chr3 145823947 145823998 -72213160 + MLT1K LTR MaLR 512 563 -25 576 206 163 7 chr3 145824114 145824255 -72212903 - MIR SINE MIR -67 195 33 302 167 156 52 chr3 145824483 145824579 -72212579 + L2 LINE L2 3208 3313 0 930 238 78 0 chr3 145824840 145825071 -72212087 + MER5C DNA MER1_type 26 274 -50 1429 212 79 3 chr3 145825158 145825498 -72211660 + LTR37A LTR ERV1 7 372 -54 1737 168 0 7 chr3 145825512 145825823 -72211335 + AluSx SINE Alu 1 309 0 213 39 0 0 chr3 145826104 145826130 -72211028 + (GA)n Simple_repeat Simple_repeat 1 26 0 2906 228 73 4 chr3 145826707 145827395 -72209763 - L1MB7 LINE L1 -1 6183 5449 217 271 0 0 chr3 145828107 145828155 -72209003 + MIR SINE MIR 79 126 -136 565 301 12 6 chr3 145828392 145828558 -72208600 + MIR SINE MIR 80 246 -16 186 333 44 0 chr3 145829095 145829185 -72207973 - MIR SINE MIR -7 255 162 253 276 46 11 chr3 145829190 145829277 -72207881 + MIR SINE MIR 13 102 -160 234 239 120 22 chr3 145830655 145830747 -72206411 + MLT1L LTR MaLR 505 605 -10 854 312 77 30 chr3 145831284 145831723 -72205435 + MLT1K LTR MaLR 116 575 -13 448 195 153 17 chr3 145831819 145831937 -72205221 + MIR3 SINE MIR 72 205 -3 554 299 83 0 chr3 145832418 145832575 -72204583 + MIR SINE MIR 92 261 -1 534 274 43 41 chr3 145833284 145833509 -72203649 + MIR SINE MIR 1 228 -34 292 281 132 0 chr3 145834671 145834792 -72202366 - MIR3 SINE MIR -10 198 62 2397 128 20 43 chr3 145835002 145835243 -72201915 - MLT1B LTR MaLR 0 390 160 1831 146 0 7 chr3 145835243 145835545 -72201613 + AluJb SINE Alu 1 300 -12 2397 128 20 43 chr3 145835545 145835702 -72201456 - MLT1B LTR MaLR -230 160 1 266 318 31 39 chr3 145835954 145836083 -72201075 + MIR SINE MIR 79 206 -56 29 60 0 0 chr3 145836090 145836140 -72201018 + AT_rich Low_complexity Low_complexity 1 50 0 812 237 64 19 chr3 145836479 145836727 -72200431 + MIR SINE MIR 3 261 -1 227 266 143 112 chr3 145836739 145837187 -72199971 - L2 LINE L2 -7 3265 2804 186 103 0 0 chr3 145837627 145837656 -72199502 + (CCCTAA)n Simple_repeat Simple_repeat 4 32 0 1978 83 0 80 chr3 145838005 145838318 -72198840 - AluSg SINE Alu -22 288 1 593 289 19 28 chr3 145838437 145838648 -72198510 - MLT1K LTR MaLR -15 573 365 2595 184 43 18 chr3 145838660 145839214 -72197944 - L1MB7 LINE L1 0 6184 5617 6283 205 41 8 chr3 145839216 145841085 -72196073 - L1M4 LINE L1 -513 5665 3734 350 292 25 17 chr3 145841164 145841284 -72195874 - MLT1K LTR MaLR -309 279 159 203 301 177 50 chr3 145841515 145841933 -72195225 - L2 LINE L2 -1916 1398 928 303 338 192 10 chr3 145842275 145842473 -72194685 - L2 LINE L2 -503 2811 2578 564 229 25 38 chr3 145842916 145843073 -72194085 - MIR SINE MIR -1 261 107 2036 154 14 8 chr3 145843765 145844129 -72193029 - L1PA16 LINE L1 0 6166 5801 245 324 85 12 chr3 145844292 145844551 -72192607 - L1ME3A LINE L1 -209 5961 5684 260 276 134 8 chr3 145844558 145844685 -72192473 - L1ME3A LINE L1 -544 5626 5484 21 36 0 0 chr3 145844935 145844963 -72192195 + AT_rich Low_complexity Low_complexity 1 28 0 1955 168 48 8 chr3 145845081 145845432 -72191726 - MLT1A1 LTR MaLR 0 365 1 1570 170 6 39 chr3 145845944 145846256 -72190902 + AluJb SINE Alu 1 302 -10 523 291 121 10 chr3 145848312 145848518 -72188640 + MIR SINE MIR 22 250 -12 484 212 76 8 chr3 145848884 145849016 -72188142 + MER5A DNA MER1_type 49 189 0 230 104 0 21 chr3 145849209 145849257 -72187901 + (TC)n Simple_repeat Simple_repeat 2 48 0 350 285 8 5 chr3 145849260 145849570 -72187588 + CT-rich Low_complexity Low_complexity 1 363 -20 459 0 0 0 chr3 145849570 145849621 -72187537 + (TG)n Simple_repeat Simple_repeat 2 52 0 350 285 8 5 chr3 145849621 145849643 -72187515 + CT-rich Low_complexity Low_complexity 363 383 0 217 400 22 0 chr3 145850472 145850562 -72186596 - MIR SINE MIR -63 145 54 246 32 0 0 chr3 145850572 145850603 -72186555 + (CA)n Simple_repeat Simple_repeat 2 32 0 380 264 132 8 chr3 145852660 145852789 -72184369 + MIR SINE MIR 108 252 -10 1928 202 0 29 chr3 145852809 145852974 -72184184 - MLT1A1 LTR MaLR 0 365 197 2035 135 3 0 chr3 145852974 145853278 -72183880 - AluSx SINE Alu -7 305 1 1928 202 0 29 chr3 145853278 145853488 -72183670 - MLT1A1 LTR MaLR -168 197 1 295 185 22 0 chr3 145853488 145853580 -72183578 + CT-rich Low_complexity Low_complexity 1 94 0 187 29 0 59 chr3 145854011 145854045 -72183113 + (TGGA)n Simple_repeat Simple_repeat 2 33 0 264 328 78 35 chr3 145854582 145854698 -72182460 + L2 LINE L2 3139 3259 -13 430 234 27 18 chr3 145854780 145854891 -72182267 + MIR SINE MIR 48 159 -103 205 310 30 30 chr3 145855782 145855882 -72181276 + MIR SINE MIR 107 206 -56 255 290 0 75 chr3 145856707 145856814 -72180344 - L2 LINE L2 -14 3258 3160 883 260 59 97 chr3 145856940 145857078 -72180080 + L1ME4a LINE L1 5316 5458 -663 2235 96 0 3 chr3 145857078 145857390 -72179768 + AluY SINE Alu 1 311 0 883 260 59 97 chr3 145857390 145857892 -72179266 + L1ME4a LINE L1 5458 5910 -211 2603 108 11 0 chr3 145857892 145858243 -72178915 + THE1A LTR MaLR 1 355 0 883 260 59 97 chr3 145858243 145858427 -72178731 + L1ME4a LINE L1 5910 6099 -22 366 257 72 44 chr3 145860208 145860360 -72176798 + MIR3 SINE MIR 14 146 -62 348 221 234 39 chr3 145860717 145860871 -72176287 - MIR SINE MIR -48 214 31 198 280 136 64 chr3 145861101 145861226 -72175932 - L2 LINE L2 -256 3016 2883 1011 188 22 0 chr3 145862528 145862709 -72174449 + MER20 DNA MER1_type 35 219 0 201 147 0 0 chr3 145863177 145863211 -72173947 + (TG)n Simple_repeat Simple_repeat 2 35 0 395 297 205 0 chr3 145863579 145863764 -72173394 - MIR SINE MIR 0 262 40 414 273 76 16 chr3 145864262 145864469 -72172689 + L1M4 LINE L1 58 522 -6333 2318 254 38 62 chr3 145864741 145866139 -72171019 + L1M4 LINE L1 1033 2401 -4558 341 234 63 36 chr3 145866140 145866251 -72170907 + L1M4 LINE L1 2573 2686 -4452 292 317 54 36 chr3 145866251 145866418 -72170740 - L2 LINE L2 -213 3059 2890 2170 156 14 14 chr3 145866739 145867104 -72170054 - MLT1A1 LTR MaLR 0 365 1 214 224 200 24 chr3 145867330 145867415 -72169743 - MIR SINE MIR -110 152 53 415 266 98 28 chr3 145869936 145870079 -72167079 + MIR SINE MIR 107 259 -3 277 296 65 41 chr3 145870400 145870569 -72166589 + L3b LINE CR1 1215 1387 -196 387 337 11 51 chr3 145870656 145870834 -72166324 + MIR3 SINE MIR 5 175 -33 475 249 149 25 chr3 145873452 145873653 -72163505 + MIR SINE MIR 26 251 -11 225 287 0 21 chr3 145874619 145874713 -72162445 + MER113 DNA MER1_type? 1 92 -429 432 163 116 62 chr3 145874826 145874955 -72162203 + MER113 DNA MER1_type? 278 413 -108 289 324 36 9 chr3 145875046 145875157 -72162001 - MIR SINE MIR -60 148 35 1706 168 45 3 chr3 145875272 145875393 -72161765 + AluJb SINE Alu 1 116 -196 186 71 0 0 chr3 145875393 145875421 -72161737 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1706 168 45 3 chr3 145875421 145875590 -72161568 + AluJb SINE Alu 116 303 -9 1170 79 11 6 chr3 145878591 145878768 -72158390 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 2024 117 0 0 chr3 145878782 145879047 -72158111 - AluY SINE Alu -46 265 1 251 345 112 0 chr3 145879301 145879417 -72157741 + L3 LINE CR1 1388 1516 -61 347 300 109 43 chr3 145879793 145880003 -72157155 - MIR SINE MIR -18 244 21 192 141 188 47 chr3 145880795 145880859 -72156299 - L2 LINE L2 -2 3270 3198 765 239 64 23 chr3 145880992 145881268 -72155890 + L1MEc LINE L1 1148 1397 -5012 185 321 37 0 chr3 145882125 145882206 -72154952 + MIR SINE MIR 68 151 -111 627 232 135 11 chr3 145882212 145882397 -72154761 - MIR SINE MIR -7 255 48 587 235 49 64 chr3 145882576 145882780 -72154378 - MIR SINE MIR -2 260 60 827 268 108 35 chr3 145882945 145883407 -72153751 - MLT1H LTR MaLR -12 537 42 451 286 77 22 chr3 145885301 145885483 -72151675 + MIR SINE MIR 21 212 -50 319 94 0 38 chr3 145887082 145887135 -72150023 + MER5A DNA MER1_type 1 51 -138 1030 172 44 0 chr3 145887159 145887339 -72149819 - MER5A DNA MER1_type 0 189 2 207 352 8 24 chr3 145889377 145889502 -72147656 + C-rich Low_complexity Low_complexity 4 126 0 210 128 0 0 chr3 145890667 145890706 -72146452 + (TG)n Simple_repeat Simple_repeat 1 39 0 351 289 39 62 chr3 145890833 145891020 -72146138 + MIR3 SINE MIR 2 199 -9 252 306 19 31 chr3 145891029 145891189 -72145969 + GA-rich Low_complexity Low_complexity 1 158 0 232 385 6 12 chr3 145891467 145891628 -72145530 + CT-rich Low_complexity Low_complexity 4 163 0 560 189 16 94 chr3 145891795 145891986 -72145172 - MER112 DNA MER1_type -5 255 80 279 130 0 0 chr3 145892002 145892056 -72145102 + (CA)n Simple_repeat Simple_repeat 2 55 0 434 150 0 0 chr3 145893684 145893744 -72143414 - AluS SINE Alu -249 61 2 192 77 0 0 chr3 145894600 145894626 -72142532 + (T)n Simple_repeat Simple_repeat 1 26 0 1159 81 0 58 chr3 145895224 145895398 -72141760 - L1PA10 LINE L1 0 6168 6005 470 64 0 51 chr3 145896276 145896354 -72140804 - AluY SINE Alu -200 111 38 25 31 0 0 chr3 145896356 145896388 -72140770 + AT_rich Low_complexity Low_complexity 1 32 0 310 257 7 105 chr3 145896444 145896596 -72140562 - L1ME3 LINE L1 -76 6086 5950 601 281 44 54 chr3 145896649 145897037 -72140121 - L1ME3 LINE L1 -230 5940 5557 314 333 54 34 chr3 145897040 145897187 -72139971 - L1ME3 LINE L1 -1481 4665 4516 254 343 131 17 chr3 145897200 145897509 -72139649 - L1ME3 LINE L1 -1712 4434 4162 1977 166 0 13 chr3 145897509 145897822 -72139336 - AluJb SINE Alu -3 309 1 254 343 131 17 chr3 145897822 145898171 -72138987 - L1ME3 LINE L1 -1984 4162 3701 185 304 0 0 chr3 145899737 145899783 -72137375 + L2 LINE L2 2728 2773 -541 379 323 39 72 chr3 145899812 145900314 -72136844 + L2 LINE L2 2764 3244 -28 393 230 150 0 chr3 145902727 145902840 -72134318 + MIR SINE MIR 124 253 -9 200 339 156 21 chr3 145903818 145904010 -72133148 + L2 LINE L2 2879 3096 -217 417 328 67 15 chr3 145905738 145905933 -72131225 + L2 LINE L2 2877 3081 -191 1105 140 6 22 chr3 145906028 145906206 -72130952 - FRAM SINE Alu 0 176 2 219 301 140 22 chr3 145906388 145906524 -72130634 + MIR SINE MIR 19 170 -92 22 0 0 0 chr3 145906693 145906715 -72130443 + AT_rich Low_complexity Low_complexity 1 22 0 338 299 22 0 chr3 145907025 145907162 -72129996 + (TG)n Simple_repeat Simple_repeat 2 141 0 201 318 125 0 chr3 145907212 145907300 -72129858 - L2 LINE L2 -33 3239 3141 28 48 0 0 chr3 145907422 145907464 -72129694 + AT_rich Low_complexity Low_complexity 1 42 0 483 216 60 9 chr3 145907960 145908076 -72129082 - L2 LINE L2 -6 3307 3186 342 319 74 62 chr3 145908325 145908757 -72128401 + L2 LINE L2 2824 3260 -12 954 284 88 2 chr3 145909330 145909738 -72127420 - MER113 DNA MER1_type? -64 457 15 647 147 4 186 chr3 145909997 145910228 -72126930 + MER53 DNA DNA 1 189 0 31 26 0 0 chr3 145911776 145911814 -72125344 + AT_rich Low_complexity Low_complexity 1 38 0 873 180 33 82 chr3 145911840 145912146 -72125012 + L1MC4 LINE L1 7685 7975 -67 1294 130 37 0 chr3 145912147 145912363 -72124795 - MLT1C LTR MaLR 0 467 244 2192 90 45 0 chr3 145912490 145912778 -72124380 - AluSc SINE Alu -8 301 1 381 22 0 0 chr3 145913114 145913160 -72123998 + (TG)n Simple_repeat Simple_repeat 2 47 0 262 252 179 32 chr3 145914497 145914620 -72122538 + MIR3 SINE MIR 31 171 -37 441 0 0 0 chr3 145915111 145915160 -72121998 + (ATG)n Simple_repeat Simple_repeat 1 49 0 468 202 0 0 chr3 145916251 145916340 -72120818 - MER33 DNA MER1_type -225 99 11 682 312 34 25 chr3 145916883 145917120 -72120038 + MIR SINE MIR 8 246 -16 416 296 56 34 chr3 145917906 145918085 -72119073 + L1ME4a LINE L1 5937 6119 -2 269 232 0 0 chr3 145918702 145918758 -72118400 - L2 LINE L2 0 3313 3258 350 310 139 48 chr3 145919236 145919552 -72117606 + L2 LINE L2 2212 2556 -758 415 152 13 0 chr3 145922001 145922080 -72115078 + MER116 DNA Mariner 1 80 0 449 221 33 113 chr3 145922116 145922356 -72114802 - L1MC4a LINE L1 -1877 5931 5711 358 366 0 8 chr3 145922462 145922596 -72114562 + L1MEc LINE L1 1448 1580 -4816 2147 136 0 0 chr3 145922596 145922890 -72114268 + AluSx SINE Alu 1 294 -18 254 303 37 19 chr3 145922908 145923070 -72114088 + L1M4 LINE L1 4672 4836 -1310 240 267 72 87 chr3 145923306 145923639 -72113519 + L2 LINE L2 2570 2897 -417 387 303 46 0 chr3 145923683 145923792 -72113366 + L2 LINE L2 3200 3313 0 2359 97 3 0 chr3 145923846 145924145 -72113013 - AluSc SINE Alu -9 300 1 184 331 38 60 chr3 145924505 145924638 -72112520 - L2 LINE L2 -4 3309 3180 322 16 0 0 chr3 145925830 145925876 -72111282 + AluY SINE Alu 2 41 -261 250 284 22 75 chr3 145925979 145926113 -72111045 + MIR SINE MIR 136 262 0 186 133 0 0 chr3 145926140 145926170 -72110988 + (TG)n Simple_repeat Simple_repeat 2 31 0 27 62 0 0 chr3 145926322 145926370 -72110788 + AT_rich Low_complexity Low_complexity 1 48 0 763 338 82 52 chr3 145926997 145927901 -72109257 - L2 LINE L2 0 3272 2299 17598 32 0 0 chr3 145928386 145930618 -72106540 - L1P LINE L1 -794 5352 3120 1148 255 68 80 chr3 145930976 145931576 -72105582 + MLT1G1 LTR MaLR 3 595 0 2638 268 56 30 chr3 145932204 145933324 -72103834 + L2 LINE L2 2151 3289 -24 325 136 45 0 chr3 145933556 145933622 -72103536 - AluJ/FLAM SINE Alu -233 69 1 314 93 0 37 chr3 145933622 145933676 -72103482 - MER65B LTR ERV1 -479 52 1 386 227 71 92 chr3 145933687 145933795 -72103363 + MIR3 SINE MIR 70 176 -32 844 171 0 75 chr3 145933795 145933982 -72103176 - MER5B DNA MER1_type -4 174 2 386 227 71 92 chr3 145933982 145934014 -72103144 + MIR3 SINE MIR 176 207 -1 831 231 29 19 chr3 145934685 145934893 -72102265 + MER63A DNA MER1_type 1 210 0 399 326 47 17 chr3 145935091 145935263 -72101895 + MIR SINE MIR 29 205 -57 682 190 29 107 chr3 145935264 145935469 -72101689 - MER5A DNA MER1_type 0 189 1 2114 131 0 0 chr3 145936287 145936584 -72100574 + AluSx SINE Alu 1 297 -15 488 272 131 19 chr3 145936595 145936801 -72100357 + MIR SINE MIR 20 248 -14 636 252 46 38 chr3 145936937 145937175 -72099983 - MLT1J LTR MaLR -249 262 23 385 319 34 0 chr3 145938052 145938171 -72098987 - L2 LINE L2 0 3272 3150 899 137 0 0 chr3 145938242 145938366 -72098792 + FLAM_C SINE Alu 1 124 -19 723 188 8 0 chr3 145938382 145938510 -72098648 - MER5B DNA MER1_type -48 130 2 381 323 47 8 chr3 145939497 145939624 -72097534 + MIR3 SINE MIR 37 168 -40 875 168 93 0 chr3 145940893 145941054 -72096104 - MER5A DNA MER1_type 0 189 14 28 0 0 0 chr3 145941109 145941137 -72096021 + AT_rich Low_complexity Low_complexity 1 28 0 2207 116 0 3 chr3 145941140 145941443 -72095715 - AluSx SINE Alu -10 302 1 455 218 83 45 chr3 145942567 145942827 -72094331 + L1P5 LINE L1 5197 5460 -691 197 343 67 9 chr3 145943268 145943373 -72093785 - L2 LINE L2 -1 3271 3161 285 296 17 22 chr3 145943762 145943939 -72093219 + AluJ/FLAM SINE Alu 1 92 -210 5824 139 31 13 chr3 145944571 145945646 -72091512 + LTR49-int LTR ERV1 4586 5679 -652 2083 133 121 81 chr3 145945908 145946405 -72090753 + LTR44 LTR ERV1 3 519 0 247 263 32 63 chr3 145946574 145946669 -72090489 - MIR3 SINE MIR -102 106 15 312 27 0 0 chr3 145946750 145946787 -72090371 + (CA)n Simple_repeat Simple_repeat 1 37 0 248 315 60 37 chr3 145946946 145947162 -72089996 - MLT1K LTR MaLR -286 302 82 347 333 42 21 chr3 145947883 145948027 -72089131 - MIR3 SINE MIR -47 161 15 22 0 0 0 chr3 145949032 145949054 -72088104 + AT_rich Low_complexity Low_complexity 1 22 0 5905 214 23 7 chr3 145950606 145952092 -72085066 - L1 LINE L1 -2009 4137 2628 187 238 0 0 chr3 145952825 145952867 -72084291 + L3 LINE CR1 1534 1575 -2 2454 52 0 26 chr3 145953088 145953395 -72083763 + AluY SINE Alu 1 299 -12 382 379 55 41 chr3 145953579 145953798 -72083360 + L1MC/D LINE L1 5581 5802 -2006 22 0 0 0 chr3 145954022 145954044 -72083114 + AT_rich Low_complexity Low_complexity 1 22 0 1420 177 0 9 chr3 145954832 145955058 -72082100 - AluJo SINE Alu -88 224 1 23 68 0 0 chr3 145955063 145955107 -72082051 + AT_rich Low_complexity Low_complexity 1 44 0 1588 83 0 0 chr3 145955412 145955604 -72081554 + AluY SINE Alu 1 192 -119 2366 95 0 0 chr3 145955727 145956023 -72081135 - AluY SINE Alu -15 296 1 581 237 38 0 chr3 145956023 145956154 -72081004 + MER58B DNA MER1_type 205 340 -1 240 152 0 0 chr3 145956899 145956945 -72080213 + Alu SINE Alu 256 301 -1 27 96 0 0 chr3 145957094 145957177 -72079981 + AT_rich Low_complexity Low_complexity 1 83 0 380 352 60 48 chr3 145957878 145958332 -72078826 - L1MEd LINE L1 -5314 805 347 4003 87 4 2 chr3 145958892 145959446 -72077712 + L1PB1 LINE L1 5597 6151 0 185 365 24 90 chr3 145959504 145959671 -72077487 - L2 LINE L2 -89 3183 3028 266 273 0 15 chr3 145960035 145960101 -72077057 + MIR SINE MIR 21 85 -177 2102 127 38 3 chr3 145960117 145960464 -72076694 - MER46B DNA MER2_type -1 235 2 710 271 77 5 chr3 145960468 145960675 -72076483 + MER58A DNA MER1_type 3 224 0 817 163 52 6 chr3 145962001 145962178 -72074980 - MIR SINE MIR -30 232 53 2466 87 0 0 chr3 145962186 145962496 -72074662 + AluY SINE Alu 1 310 -1 4052 117 34 27 chr3 145962758 145963547 -72073611 - L1P3 LINE L1 -4653 1808 1019 255 323 0 37 chr3 145963577 145963738 -72073420 + C-rich Low_complexity Low_complexity 4 158 0 192 200 0 0 chr3 145963773 145963823 -72073335 + C-rich Low_complexity Low_complexity 1 50 0 835 57 50 14 chr3 145964061 145964202 -72072956 - L1PA8 LINE L1 -129 6043 5898 247 315 141 47 chr3 145964623 145964772 -72072386 - MIR SINE MIR -15 247 85 893 271 25 0 chr3 145964772 145965012 -72072146 - LTR16A LTR ERVL 0 450 205 220 320 93 21 chr3 145965477 145965574 -72071584 + MIR SINE MIR 51 154 -108 688 300 33 14 chr3 145965591 145965801 -72071357 - MIR SINE MIR -17 245 32 22 35 0 0 chr3 145965867 145965896 -72071262 + AT_rich Low_complexity Low_complexity 1 29 0 1951 185 0 3 chr3 145966086 145966399 -72070759 - AluJb SINE Alu 0 312 1 493 299 41 7 chr3 145967211 145967358 -72069800 + MLT1J LTR MaLR 213 364 -147 202 355 45 9 chr3 145967746 145967856 -72069302 - L3b LINE CR1 -286 1297 1184 264 300 0 22 chr3 145967904 145967994 -72069164 - MER20B DNA MER1_type -619 164 77 261 0 0 0 chr3 145968538 145968567 -72068591 + (G)n Simple_repeat Simple_repeat 1 29 0 1764 134 49 0 chr3 145968617 145968945 -72068213 - MLT2A1 LTR ERVL -100 344 1 1467 138 31 4 chr3 145968945 145969203 -72067955 + MER65A LTR ERV1 181 445 0 265 254 46 81 chr3 145969377 145969550 -72067608 + L2 LINE L2 3072 3238 -75 302 224 0 30 chr3 145969555 145969622 -72067536 - L2 LINE L2 0 3313 3249 272 186 0 0 chr3 145969618 145969661 -72067497 + L2 LINE L2 3215 3257 -15 * 632 159 303 0 chr3 145969732 145969877 -72067281 + MER5A DNA MER1_type 1 189 0 24 32 0 0 chr3 145970874 145970905 -72066253 + AT_rich Low_complexity Low_complexity 1 31 0 369 304 97 1 chr3 145971141 145971396 -72065762 - MLT1I LTR MaLR -49 360 56 805 257 65 16 chr3 145971670 145971915 -72065243 - MIR SINE MIR 0 262 6 433 298 22 28 chr3 145972327 145972508 -72064650 - LTR16C LTR ERVL 0 491 312 1131 85 5 79 chr3 145973888 145974077 -72063081 + L1PB1 LINE L1 5976 6150 -1 418 235 16 112 chr3 145975845 145976033 -72061125 + MIR SINE MIR 36 200 -62 225 0 0 0 chr3 145976685 145976710 -72060448 + (A)n Simple_repeat Simple_repeat 1 25 0 22 35 0 0 chr3 145977136 145977165 -72059993 + AT_rich Low_complexity Low_complexity 1 29 0 1013 216 213 28 chr3 145978156 145978517 -72058641 - LTR50 LTR ERVL -343 452 25 395 235 0 12 chr3 145978525 145978610 -72058548 + MIR SINE MIR 40 123 -139 1397 66 30 15 chr3 145979530 145979727 -72057431 + L1MA1 LINE L1 6103 6302 0 3125 191 45 21 chr3 145979743 145980496 -72056662 + L1MB8 LINE L1 5387 6157 -21 8102 66 1 3 chr3 145980690 145981746 -72055412 + L1P LINE L1 2033 3086 -3060 1125 175 0 46 chr3 145982471 145982688 -72054470 + AluJo SINE Alu 86 292 -20 1075 259 35 12 chr3 145982803 145983146 -72054012 + L2 LINE L2 2464 2814 -500 1532 127 45 0 chr3 145983318 145983562 -72053596 + L1MA8 LINE L1 6034 6288 -3 322 207 49 12 chr3 145983970 145984052 -72053106 - MIR SINE MIR -87 175 91 557 224 12 68 chr3 145984539 145984700 -72052458 - AluSc SINE Alu -3 306 155 1206 218 91 57 chr3 145984862 145985247 -72051911 + MLT1J2 LTR MaLR 27 424 -26 387 343 14 14 chr3 145985675 145985882 -72051276 - L2 LINE L2 -218 3054 2848 703 225 55 33 chr3 145987856 145988038 -72049120 - MER3 DNA MER1_type -10 199 14 249 0 0 0 chr3 145988490 145988524 -72048634 + L1PA3 LINE L1 5974 6007 -148 225 154 0 0 chr3 145988533 145988572 -72048586 + C-rich Low_complexity Low_complexity 5 43 0 285 375 0 7 chr3 145988613 145988871 -72048287 + C-rich Low_complexity Low_complexity 1 256 0 2370 87 0 0 chr3 145989193 145989492 -72047666 - AluY SINE Alu -12 299 1 453 291 93 65 chr3 145989549 145989948 -72047210 - L1MEd LINE L1 -5669 450 41 323 185 31 0 chr3 145990445 145990510 -72046648 - Alu SINE Alu -1 301 235 425 118 127 0 chr3 145990512 145990622 -72046536 + L1MB1 LINE L1 6038 6161 -7 2177 195 15 10 chr3 145991369 145991791 -72045367 - MSTB LTR MaLR 0 411 1 271 290 65 29 chr3 145991846 145991984 -72045174 + MLT1L LTR MaLR 466 608 -7 563 164 30 103 chr3 145992099 145992264 -72044894 + L1M4 LINE L1 4671 4823 -1323 25 0 0 0 chr3 145993295 145993320 -72043838 + AT_rich Low_complexity Low_complexity 1 25 0 7660 52 132 7 chr3 145993966 145995024 -72042134 - L1P LINE L1 -4318 1828 638 848 213 0 33 chr3 145995248 145995431 -72041727 - MER5B DNA MER1_type 0 178 2 410 268 183 7 chr3 145995441 145995594 -72041564 - MER5A DNA MER1_type -1 188 9 2320 71 3 7 chr3 145995826 145996121 -72041037 + AluSg SINE Alu 1 294 -16 411 168 59 20 chr3 145996197 145996298 -72040860 - MLT1H1 LTR MaLR -25 530 426 1021 240 37 43 chr3 145997954 145998254 -72038904 + L2 LINE L2 2241 2538 -776 5904 20 0 0 chr3 145998309 145998971 -72038187 - L1PA2 LINE L1 -2 6153 5492 21 0 0 0 chr3 145999619 145999640 -72037518 + AT_rich Low_complexity Low_complexity 1 21 0 316 158 83 51 chr3 146000315 146000424 -72036734 - L1M LINE L1 -817 5367 5263 303 340 24 12 chr3 146000506 146000676 -72036482 - MIR3 SINE MIR -6 202 28 205 227 30 45 chr3 146000855 146000921 -72036237 + MER5B DNA MER1_type 3 67 -111 1093 178 11 5 chr3 146001100 146001285 -72035873 - MER5A DNA MER1_type -3 186 1 724 240 38 64 chr3 146001522 146001565 -72035593 + MLT1A2 LTR MaLR 83 126 -248 2129 71 18 0 chr3 146001565 146001845 -72035313 + AluY SINE Alu 5 289 -22 724 240 38 64 chr3 146001845 146002068 -72035090 + MLT1A2 LTR MaLR 126 342 -32 207 0 0 0 chr3 146002068 146002091 -72035067 + (TG)n Simple_repeat Simple_repeat 1 23 0 334 102 0 0 chr3 146002135 146002184 -72034974 + (C)n Simple_repeat Simple_repeat 1 49 0 249 300 27 86 chr3 146002945 146003019 -72034139 - L2 LINE L2 -742 2572 2495 2104 107 0 0 chr3 146003019 146003290 -72033868 + AluSx SINE Alu 22 292 -20 249 300 27 86 chr3 146003290 146003472 -72033686 - L2 LINE L2 -819 2495 2331 547 203 175 0 chr3 146004963 146005106 -72032052 - MER3 DNA MER1_type -41 168 1 896 196 165 16 chr3 146005113 146005368 -72031790 + L1MD3 LINE L1 7693 7985 -10 310 267 228 0 chr3 146005448 146005549 -72031609 - MER5A DNA MER1_type 0 189 66 1442 153 4 20 chr3 146005549 146005797 -72031361 - AluJo SINE Alu -4 308 65 668 74 11 0 chr3 146006132 146006227 -72030931 + (TAGA)n Simple_repeat Simple_repeat 3 98 0 1271 239 14 27 chr3 146006227 146006520 -72030638 - MLT2B2 LTR ERVL -56 459 171 1207 196 5 119 chr3 146006566 146006793 -72030365 + L1MB1 LINE L1 5642 5809 -359 2149 129 7 3 chr3 146006793 146007102 -72030056 + AluSx SINE Alu 2 311 -1 1207 196 5 119 chr3 146007102 146007261 -72029897 + L1MB1 LINE L1 5809 5984 -184 1240 210 37 62 chr3 146007420 146007825 -72029333 - L1MC5 LINE L1 -262 7699 7305 280 320 40 20 chr3 146008100 146008250 -72028908 + MIR SINE MIR 109 261 -1 397 332 47 24 chr3 146008284 146008664 -72028494 - L2 LINE L2 -528 2786 2398 443 172 35 48 chr3 146008695 146008840 -72028318 - Charlie7 DNA MER1_type -52 2560 2418 * 1596 240 75 36 chr3 146008834 146009451 -72027707 - Charlie7 DNA MER1_type -1891 721 81 29 0 0 0 chr3 146012591 146012620 -72024538 + AT_rich Low_complexity Low_complexity 1 29 0 403 138 0 0 chr3 146012910 146012968 -72024190 + MER58B DNA MER1_type 243 300 -41 520 336 34 4 chr3 146013330 146013565 -72023593 - MIR SINE MIR 0 262 21 322 269 11 21 chr3 146014958 146015051 -72022107 + GA-rich Low_complexity Low_complexity 4 95 0 295 358 141 18 chr3 146015207 146015766 -72021392 + L3 LINE CR1 940 1567 -10 350 349 26 23 chr3 146020581 146020814 -72016344 - MIR SINE MIR -27 235 2 839 237 31 9 chr3 146020912 146021136 -72016022 - LTR33 LTR ERVL -1 520 292 297 222 0 0 chr3 146021226 146021289 -72015869 - LTR33 LTR ERVL -445 76 14 1340 210 35 18 chr3 146021432 146021770 -72015388 + MLT1C LTR MaLR 1 344 -123 4944 107 75 103 chr3 146021788 146023207 -72013951 - pTR5 LTR ERV1 0 2438 741 421 198 156 10 chr3 146023209 146023305 -72013853 + MLT1C LTR MaLR 358 467 0 309 316 28 46 chr3 146025030 146025248 -72011910 - L1MC/D LINE L1 -2065 5743 5530 267 133 0 0 chr3 146026122 146026167 -72010991 + (TG)n Simple_repeat Simple_repeat 1 45 0 207 281 53 61 chr3 146026393 146026507 -72010651 + L2 LINE L2 3197 3309 -4 749 144 16 16 chr3 146027203 146027328 -72009830 - FLAM_A SINE Alu -8 125 1 220 146 0 42 chr3 146028142 146028190 -72008968 + (GGGAGA)n Simple_repeat Simple_repeat 2 47 0 1624 189 60 7 chr3 146030345 146030908 -72006250 + L1ME1 LINE L1 4917 5529 -637 1304 226 44 58 chr3 146030918 146031347 -72005811 + L1ME1 LINE L1 5713 6135 -31 272 335 112 19 chr3 146031844 146032005 -72005153 + MIR3 SINE MIR 20 195 -13 195 319 231 20 chr3 146034256 146034507 -72002651 + L2 LINE L2 2175 2478 -836 186 352 47 23 chr3 146034643 146034771 -72002387 + L2 LINE L2 3104 3234 -38 495 325 159 7 chr3 146034785 146035352 -72001806 - L2 LINE L2 -861 2453 1801 243 282 120 111 chr3 146036984 146037300 -71999858 + L2 LINE L2 2954 3272 0 277 287 53 40 chr3 146037819 146037969 -71999189 - MARNA DNA Mariner -169 417 266 239 292 0 0 chr3 146037983 146038048 -71999110 + (TATG)n Simple_repeat Simple_repeat 1 65 0 307 290 21 43 chr3 146038048 146038141 -71999017 - L1MC4 LINE L1 -1338 6704 6614 325 327 19 9 chr3 146038145 146038252 -71998906 - L1MC4 LINE L1 -1340 6702 6595 321 226 0 0 chr3 146038254 146038338 -71998820 + (TG)n Simple_repeat Simple_repeat 1 84 0 294 339 50 0 chr3 146038373 146038494 -71998664 + MARNA DNA Mariner 404 530 -56 359 327 39 20 chr3 146038772 146038925 -71998233 + MIR SINE MIR 13 168 -94 287 222 103 17 chr3 146039279 146039396 -71997762 - MLT1K LTR MaLR -1 587 461 454 290 72 0 chr3 146039900 146040038 -71997120 - MIR SINE MIR -114 148 1 195 42 0 0 chr3 146040991 146041015 -71996143 + (GA)n Simple_repeat Simple_repeat 1 24 0 194 310 76 69 chr3 146041156 146041301 -71995857 - L3b LINE CR1 -18 1565 1420 240 272 120 0 chr3 146042128 146042220 -71994938 - MIR SINE MIR -2 260 158 197 225 126 63 chr3 146042692 146042803 -71994355 - L2 LINE L2 -2826 488 371 317 378 117 14 chr3 146042965 146043391 -71993767 + L3 LINE CR1 663 1132 -445 186 167 0 0 chr3 146044193 146044229 -71992929 + T-rich Low_complexity Low_complexity 1 36 0 598 230 7 39 chr3 146045019 146045173 -71991985 - MIR SINE MIR -47 215 67 413 295 140 39 chr3 146046550 146046757 -71990401 - MIR SINE MIR -2 260 33 * 1052 299 109 31 chr3 146046747 146047198 -71989960 + L2 LINE L2 2826 3311 -2 463 259 40 40 chr3 146047466 146047640 -71989518 + MARNA DNA Mariner 149 322 -264 625 263 34 34 chr3 146047685 146047894 -71989264 + MARNA DNA Mariner 149 357 -229 453 19 0 0 chr3 146048026 146048080 -71989078 + (CA)n Simple_repeat Simple_repeat 1 54 0 278 250 154 44 chr3 146048878 146049014 -71988144 - L2 LINE L2 -1005 2309 2159 216 320 0 60 chr3 146049116 146049216 -71987942 - L2 LINE L2 -78 3235 3142 225 337 12 0 chr3 146049361 146049444 -71987714 + MIR SINE MIR 56 139 -123 1664 188 28 55 chr3 146050215 146050652 -71986506 - L1MB8 LINE L1 -2 6176 5752 1022 257 102 25 chr3 146051005 146051465 -71985693 - L1MB8 LINE L1 -751 5395 5214 502 317 92 43 chr3 146051520 146051801 -71985357 - L1MB8 LINE L1 -982 5164 4870 412 310 30 18 chr3 146051804 146051985 -71985173 - L1MC/D LINE L1 -539 5582 5422 291 321 162 62 chr3 146052409 146052835 -71984323 + L2 LINE L2 2580 3102 -211 2434 161 52 0 chr3 146052835 146053240 -71983918 + MSTB LTR MaLR 1 426 0 291 321 162 62 chr3 146053240 146053476 -71983682 + L2 LINE L2 3102 3313 0 332 170 14 48 chr3 146053863 146053961 -71983197 - MIR SINE MIR -11 197 104 1533 178 17 13 chr3 146054076 146054374 -71982784 - AluJo SINE Alu -13 299 1 180 339 36 36 chr3 146055181 146055346 -71981812 - L2 LINE L2 -270 3002 2838 266 263 149 44 chr3 146056342 146056456 -71980702 + MIR SINE MIR 78 203 -59 2364 132 92 8 chr3 146056694 146057087 -71980071 - MSTB LTR MaLR 0 426 1 206 336 98 0 chr3 146057366 146057488 -71979670 + L3b LINE CR1 1329 1462 -121 239 0 32 0 chr3 146058622 146058653 -71978505 + (TC)n Simple_repeat Simple_repeat 1 32 0 * 282 29 0 0 chr3 146058652 146058687 -71978471 + (CA)n Simple_repeat Simple_repeat 1 35 0 303 28 0 0 chr3 146061348 146061384 -71975774 + (T)n Simple_repeat Simple_repeat 1 36 0 3747 10 0 0 chr3 146061387 146061802 -71975356 - L1HS LINE L1 0 6155 5741 1853 5 0 0 chr3 146061798 146061997 -71975161 + L1P1 LINE L1 5538 5736 -419 * 245 291 0 0 chr3 146062903 146062958 -71974200 + MIR SINE MIR 52 106 -102 201 346 75 9 chr3 146063442 146063549 -71973609 - MER5B DNA MER1_type -24 154 41 333 0 0 0 chr3 146064694 146064731 -71972427 + (TG)n Simple_repeat Simple_repeat 1 37 0 239 238 0 0 chr3 146065620 146065662 -71971496 - MIR SINE MIR -122 86 45 378 0 0 0 chr3 146066247 146066289 -71970869 + (T)n Simple_repeat Simple_repeat 1 42 0 228 313 38 12 chr3 146067630 146067710 -71969448 - L3 LINE CR1 -98 1479 1398 945 206 30 176 chr3 146068001 146068500 -71968658 - L1MC4a LINE L1 -1969 5839 5414 180 111 0 0 chr3 146069373 146069400 -71967758 + (TCCCC)n Simple_repeat Simple_repeat 4 30 0 473 0 18 0 chr3 146069416 146069473 -71967685 + (TTCC)n Simple_repeat Simple_repeat 2 59 0 233 260 7 68 chr3 146069484 146069630 -71967528 - MER113 DNA MER1_type? -378 143 7 657 290 12 0 chr3 146069799 146069968 -71967190 - MIR SINE MIR -12 250 80 841 177 0 18 chr3 146071699 146071863 -71965295 + FRAM SINE Alu 1 161 -15 2057 172 21 41 chr3 146073614 146074051 -71963107 + MSTC LTR MaLR 1 428 0 304 276 167 38 chr3 146074352 146074562 -71962596 + MIR SINE MIR 19 255 -7 2703 218 84 25 chr3 146074872 146075658 -71961500 - L1ME1 LINE L1 -25 6141 5293 188 180 0 20 chr3 146075660 146075710 -71961448 + GA-rich Low_complexity Low_complexity 4 52 0 1123 220 54 48 chr3 146076253 146076625 -71960533 - L1ME1 LINE L1 -858 5288 4915 381 326 57 13 chr3 146076628 146076858 -71960300 + L2 LINE L2 2977 3216 -97 234 211 0 19 chr3 146078466 146078518 -71958640 + CT-rich Low_complexity Low_complexity 2 52 0 240 145 26 13 chr3 146078613 146078689 -71958469 + (TA)n Simple_repeat Simple_repeat 2 78 0 377 78 97 7 chr3 146078715 146078869 -71958289 + (TA)n Simple_repeat Simple_repeat 2 169 0 2395 105 0 3 chr3 146079706 146080012 -71957146 - AluSx SINE Alu -7 305 1 282 143 0 0 chr3 146080497 146080546 -71956612 + (CA)n Simple_repeat Simple_repeat 1 49 0 1055 229 20 4 chr3 146080563 146080807 -71956351 + MIR SINE MIR 15 262 0 306 297 14 29 chr3 146081188 146081326 -71955832 + CT-rich Low_complexity Low_complexity 2 137 0 315 273 8 50 chr3 146081863 146081984 -71955174 - MIR SINE MIR -34 228 113 243 81 0 0 chr3 146083254 146083291 -71953867 + L1MA9 LINE L1 6270 6306 -6 545 191 0 11 chr3 146085870 146085959 -71951199 + Tigger5 DNA MER2_type 1 88 -2235 457 109 294 0 chr3 146085959 146086051 -71951107 + Tigger5 DNA MER2_type 2205 2323 0 1986 253 64 0 chr3 146086334 146086773 -71950385 - MLT1G LTR MaLR -103 487 21 841 283 176 14 chr3 146087535 146087881 -71949277 - MLT1I LTR MaLR -7 402 1 196 333 0 28 chr3 146087964 146088036 -71949122 - L2 LINE L2 -3 3310 3241 543 289 89 32 chr3 146088184 146088430 -71948728 - MIR SINE MIR 0 262 3 312 255 49 10 chr3 146088576 146088678 -71948480 + GA-rich Low_complexity Low_complexity 2 107 0 2200 93 7 17 chr3 146091437 146091738 -71945420 - AluSx SINE Alu -14 298 1 512 217 58 0 chr3 146091879 146092017 -71945141 + MIR SINE MIR 114 259 -3 297 0 0 0 chr3 146092992 146093025 -71944133 + (CA)n Simple_repeat Simple_repeat 2 34 0 204 179 0 0 chr3 146093409 146093448 -71943710 + (TAA)n Simple_repeat Simple_repeat 2 40 0 524 280 16 16 chr3 146093448 146093536 -71943622 - MIR SINE MIR 0 262 175 1365 192 47 88 chr3 146093536 146093758 -71943400 + MLT1B LTR MaLR 1 231 -159 2040 106 0 41 chr3 146093758 146094050 -71943108 + AluY SINE Alu 1 280 -31 216 0 0 0 chr3 146094054 146094078 -71943080 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1365 192 47 88 chr3 146094078 146094257 -71942901 + MLT1B LTR MaLR 234 390 0 524 280 16 16 chr3 146094257 146094350 -71942808 - MIR SINE MIR -86 176 81 234 208 0 0 chr3 146095749 146095802 -71941356 + (CA)n Simple_repeat Simple_repeat 2 54 0 962 214 53 43 chr3 146095966 146096289 -71940869 - HAL1b LINE L1 -249 1099 774 552 239 70 32 chr3 146096293 146096606 -71940552 - HAL1b LINE L1 -613 735 308 611 213 157 2 chr3 146096881 146097129 -71940029 + MER2 DNA MER2_type 11 345 0 238 268 0 0 chr3 146098775 146098831 -71938327 - L2 LINE L2 -7 3265 3210 215 225 84 28 chr3 146099003 146099074 -71938084 + L2 LINE L2 3139 3213 -59 388 298 92 87 chr3 146100180 146100526 -71936632 + L2 LINE L2 2923 3270 -2 780 185 0 0 chr3 146100873 146101003 -71936155 - FLAM_A SINE Alu -3 130 1 3018 179 60 30 chr3 146101070 146101267 -71935891 - L1MD2 LINE L1 -1 6358 6168 261 0 0 0 chr3 146101267 146101296 -71935862 + (TG)n Simple_repeat Simple_repeat 2 30 0 3018 179 60 30 chr3 146101296 146101786 -71935372 - L1MD2 LINE L1 -191 6168 5651 1348 190 18 53 chr3 146101783 146102136 -71935022 + L1MC/D LINE L1 5363 5707 -464 * 234 223 165 29 chr3 146102116 146102219 -71934939 - L1ME4a LINE L1 -20 6101 5985 * 1604 197 27 7 chr3 146102468 146102767 -71934391 - AluJb SINE Alu -7 305 1 433 297 85 50 chr3 146102773 146103113 -71934045 - L1MD2 LINE L1 -457 5664 5313 399 314 79 29 chr3 146103587 146103867 -71933291 - HAL1b LINE L1 -1016 332 39 187 277 0 0 chr3 146105043 146105090 -71932068 + L2 LINE L2 3193 3239 -33 578 286 26 5 chr3 146108015 146108207 -71928951 - L1MC4a LINE L1 -1910 5898 5703 1212 167 0 9 chr3 146108208 146108430 -71928728 + L1MB4 LINE L1 5650 5869 -311 469 154 110 11 chr3 146108437 146108528 -71928630 + THE1C LTR MaLR 1 100 -328 30158 42 35 4 chr3 146108528 146112257 -71924901 - L1P LINE L1 -2293 3853 10 1205 129 35 43 chr3 146112257 146112489 -71924669 + THE1C LTR MaLR 146 375 0 1521 140 68 7 chr3 146112491 146112784 -71924374 + L1MB4 LINE L1 5869 6179 -1 617 250 0 0 chr3 146112839 146112959 -71924199 + FLAM_A SINE Alu 11 130 -12 571 296 104 29 chr3 146112968 146113248 -71923910 - L1MC4a LINE L1 -2099 5709 5409 426 282 40 48 chr3 146113961 146114188 -71922970 - L3 LINE CR1 -753 824 600 758 216 140 14 chr3 146114507 146114729 -71922429 - MIR SINE MIR 0 262 13 231 300 56 0 chr3 146115408 146115498 -71921660 - MER5B DNA MER1_type -1 177 83 266 295 0 26 chr3 146115552 146115630 -71921528 - MER5B DNA MER1_type -102 76 1 508 242 134 32 chr3 146116167 146116481 -71920677 - HAL1b LINE L1 -11 1337 992 302 282 115 17 chr3 146116549 146116723 -71920435 - HAL1b LINE L1 -493 855 665 247 234 0 169 chr3 146116788 146116831 -71920327 - MER5A DNA MER1_type -83 106 57 2269 109 6 0 chr3 146116831 146117142 -71920016 - AluSq SINE Alu 0 313 1 247 234 0 169 chr3 146117142 146117222 -71919936 - MER5A DNA MER1_type -132 57 4 645 211 31 137 chr3 146117316 146117638 -71919520 - HAL1b LINE L1 -753 595 308 258 265 0 0 chr3 146120666 146120734 -71916424 + LTR67 LTR ERVL 490 557 0 216 260 271 0 chr3 146120856 146120952 -71916206 - L2 LINE L2 -22 3250 3129 2358 95 0 3 chr3 146121527 146121822 -71915336 - AluSx SINE Alu -18 294 1 610 244 66 8 chr3 146122057 146122299 -71914859 - L2 LINE L2 -245 3068 2813 189 313 61 10 chr3 146124077 146124176 -71912982 + L2 LINE L2 3168 3271 -1 393 293 57 0 chr3 146125756 146125896 -71911262 - L1ME4a LINE L1 0 6121 5974 1107 254 81 40 chr3 146125909 146126354 -71910804 - L1ME4a LINE L1 -202 5919 5457 2044 129 31 34 chr3 146126523 146126880 -71910278 - L1MB8 LINE L1 0 6178 5823 342 301 127 41 chr3 146127107 146127476 -71909682 - L1ME4a LINE L1 -1117 5029 4629 28 29 0 0 chr3 146127629 146127664 -71909494 + AT_rich Low_complexity Low_complexity 1 35 0 313 351 67 4 chr3 146127836 146128075 -71909083 - L1ME4a LINE L1 -1886 4260 4007 2380 58 31 0 chr3 146128258 146128550 -71908608 - AluY SINE Alu -10 301 1 346 357 66 9 chr3 146128550 146128864 -71908294 - L1ME4a LINE L1 -2379 3767 3436 333 288 115 59 chr3 146129063 146129403 -71907755 - HAL1b LINE L1 -630 718 360 1256 146 4 58 chr3 146129593 146129819 -71907339 - MER20 DNA MER1_type -5 214 1 305 221 212 22 chr3 146130946 146131168 -71905990 - HAL1 LINE L1 0 2507 2244 510 125 0 0 chr3 146131369 146131449 -71905709 + (TTCC)n Simple_repeat Simple_repeat 3 82 0 216 0 0 0 chr3 146131480 146131504 -71905654 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 43485 33 21 3 chr3 146131504 146137530 -71899628 - L1PA3 LINE L1 -13 6142 1 206 222 0 0 chr3 146137552 146137588 -71899570 + polypyrimidine Low_complexity Low_complexity 1 36 0 1521 219 7 0 chr3 146137588 146137890 -71899268 - AluJb SINE Alu -8 304 1 1586 278 94 30 chr3 146138039 146138943 -71898215 - HAL1 LINE L1 -803 1704 743 247 282 82 12 chr3 146139223 146139308 -71897850 - HAL1 LINE L1 -2374 133 43 241 281 0 0 chr3 146142269 146142326 -71894832 + (TCCA)n Simple_repeat Simple_repeat 2 58 0 201 318 78 23 chr3 146142326 146142455 -71894703 - L2 LINE L2 0 3272 3137 374 217 43 0 chr3 146143773 146143865 -71893293 - MIR3 SINE MIR -26 182 87 631 323 87 14 chr3 146144478 146144822 -71892336 + MLT1H1 LTR MaLR 2 370 -185 1587 99 5 5 chr3 146144825 146145047 -71892111 - pTR5 LTR ERV1 -2046 392 171 371 204 31 20 chr3 146145049 146145147 -71892011 - LTR30 LTR ERV1 -80 642 544 5381 141 178 29 chr3 146145147 146146263 -71890895 - pTR5 LTR ERV1 -413 2025 743 437 226 8 57 chr3 146146265 146146389 -71890769 + MLT1H1 LTR MaLR 373 490 -65 443 275 115 20 chr3 146146393 146146593 -71890565 + MIR SINE MIR 29 247 -15 202 189 0 0 chr3 146147112 146147149 -71890009 + GA-rich Low_complexity Low_complexity 3 39 0 574 119 0 0 chr3 146147889 146147973 -71889185 - MER53 DNA DNA 0 189 106 1917 161 29 77 chr3 146147973 146148219 -71888939 - MSTD LTR MaLR 0 396 177 1594 181 27 14 chr3 146148219 146148511 -71888647 - AluJb SINE Alu -16 296 1 1917 161 29 77 chr3 146148511 146148680 -71888478 - MSTD LTR MaLR -219 177 1 556 199 0 62 chr3 146148698 146148844 -71888314 - MER53 DNA DNA -51 138 2 1965 151 6 6 chr3 146149110 146149422 -71887736 - AluSx SINE Alu 0 312 1 317 23 0 23 chr3 146149534 146149577 -71887581 + (TAA)n Simple_repeat Simple_repeat 2 43 0 540 317 29 38 chr3 146150752 146150992 -71886166 + MIR SINE MIR 13 250 -12 3995 208 132 28 chr3 146151306 146152533 -71884625 + Charlie1a DNA MER1_type 2 1455 0 725 186 0 0 chr3 146152908 146153037 -71884121 + MER5A DNA MER1_type 61 189 0 278 306 40 16 chr3 146153037 146153157 -71884001 + MIR SINE MIR 116 238 -24 215 170 0 19 chr3 146153901 146153954 -71883204 + (TTCA)n Simple_repeat Simple_repeat 3 54 0 811 193 80 52 chr3 146154027 146154240 -71882918 + MER20 DNA MER1_type 1 219 0 1814 157 13 29 chr3 146154505 146154846 -71882312 - AluJb SINE Alu 0 340 5 1044 260 134 23 chr3 146155516 146155986 -71881172 - MLT1G1 LTR MaLR 0 595 74 25 51 0 0 chr3 146156652 146156691 -71880467 + AT_rich Low_complexity Low_complexity 1 39 0 2233 136 25 8 chr3 146156834 146157187 -71879971 + MSTB LTR MaLR 1 359 -67 315 0 0 0 chr3 146157193 146157228 -71879930 + (TG)n Simple_repeat Simple_repeat 2 36 0 320 181 24 60 chr3 146157228 146157311 -71879847 - LTR9 LTR ERV1 -87 525 446 374 135 27 54 chr3 146157319 146157393 -71879765 + MSTB LTR MaLR 355 426 0 2549 68 0 0 chr3 146158860 146159171 -71877987 + AluY SINE Alu 1 311 0 303 179 0 0 chr3 146159173 146159229 -71877929 + L1MC4 LINE L1 6648 6703 -1339 317 311 0 0 chr3 146159243 146159333 -71877825 + L1MC4 LINE L1 6614 6703 -1339 517 124 8 116 chr3 146159343 146159472 -71877686 + MLT2D LTR ERVL 1 115 -299 836 114 8 8 chr3 146159478 146159610 -71877548 + L1MA4A LINE L1 6159 6290 -13 320 118 0 0 chr3 146159633 146159684 -71877474 + L1M4 LINE L1 5571 5621 -563 559 235 45 29 chr3 146159684 146159972 -71877186 - MER110A LTR ERV1 -89 379 37 1665 175 7 24 chr3 146159985 146160276 -71876882 + AluJo SINE Alu 1 286 -26 183 222 0 0 chr3 146160276 146160321 -71876837 + (TA)n Simple_repeat Simple_repeat 2 46 0 279 0 0 0 chr3 146160321 146160352 -71876806 + (CA)n Simple_repeat Simple_repeat 2 32 0 1273 142 51 87 chr3 146160397 146160672 -71876486 + MLT2D LTR ERVL 103 367 -47 246 314 59 39 chr3 146161345 146161600 -71875558 - L1ME LINE L1 -217 5904 5645 334 250 31 70 chr3 146161720 146161848 -71875310 - MIR SINE MIR -108 154 32 203 226 16 32 chr3 146163676 146163738 -71873420 + CT-rich Low_complexity Low_complexity 1 61 0 226 269 13 26 chr3 146163977 146164055 -71873103 + (TATATG)n Simple_repeat Simple_repeat 4 80 0 191 114 29 0 chr3 146165752 146165787 -71871371 + GA-rich Low_complexity Low_complexity 3 38 0 241 277 24 12 chr3 146166066 146166171 -71870987 + MIR SINE MIR 43 147 -84 2859 189 34 7 chr3 146166294 146166891 -71870267 - L1MB7 LINE L1 0 6184 5572 3324 87 8 14 chr3 146166925 146167410 -71869748 - L1MA1 LINE L1 0 6302 5821 1497 132 4 0 chr3 146167419 146167646 -71869512 - L1PB1 LINE L1 -7 6144 5917 15727 186 36 10 chr3 146167646 146167879 -71869279 - L1PB1 LINE L1 -150 6717 6491 3987 30 4 0 chr3 146167879 146168344 -71868814 - L1PA4 LINE L1 0 6155 5689 15727 186 36 10 chr3 146168344 146174513 -71862645 - L1PB1 LINE L1 -376 6491 6 1482 144 108 10 chr3 146174530 146174921 -71862237 - L1M4 LINE L1 -601 5583 5163 638 75 0 21 chr3 146174921 146175015 -71862143 - AluY SINE Alu -6 305 214 234 223 165 29 chr3 146175270 146175373 -71861785 - L1ME4a LINE L1 -20 6101 5985 1579 201 27 7 chr3 146175622 146175921 -71861237 - AluJb SINE Alu -7 305 1 426 300 85 50 chr3 146175927 146176267 -71860891 - L1ME4a LINE L1 -457 5664 5313 399 314 79 29 chr3 146176741 146177021 -71860137 - HAL1b LINE L1 -1016 332 39 187 277 0 0 chr3 146178197 146178244 -71858914 + L2 LINE L2 3193 3239 -33 572 266 36 16 chr3 146181169 146181361 -71855797 - L1MC4a LINE L1 -1910 5898 5703 1237 162 0 9 chr3 146181362 146181584 -71855574 + L1MB4 LINE L1 5650 5869 -311 483 143 121 22 chr3 146181591 146181682 -71855476 + THE1C LTR MaLR 1 100 -328 30020 43 36 4 chr3 146181682 146185407 -71851751 - L1P LINE L1 -2293 3853 10 1218 125 35 43 chr3 146185407 146185639 -71851519 + THE1C LTR MaLR 146 375 0 1521 140 68 7 chr3 146185641 146185934 -71851224 + L1MB4 LINE L1 5869 6179 -1 632 242 0 0 chr3 146185989 146186109 -71851049 + FLAM_A SINE Alu 11 130 -12 578 306 104 22 chr3 146186118 146186396 -71850762 - L1MC4a LINE L1 -2099 5709 5409 426 282 40 48 chr3 146187109 146187336 -71849822 - L3 LINE CR1 -753 824 600 748 221 140 14 chr3 146187655 146187877 -71849281 - MIR SINE MIR 0 262 13 222 311 56 0 chr3 146188556 146188646 -71848512 - MER5B DNA MER1_type -1 177 83 266 295 0 26 chr3 146188700 146188778 -71848380 - MER5B DNA MER1_type -102 76 1 500 242 134 32 chr3 146189315 146189629 -71847529 - HAL1b LINE L1 -11 1337 992 302 282 115 17 chr3 146189697 146189871 -71847287 - HAL1b LINE L1 -493 855 665 259 238 0 156 chr3 146189936 146189977 -71847181 - MER5A DNA MER1_type -83 106 60 2232 117 0 3 chr3 146189977 146190286 -71846872 - AluSg SINE Alu -2 308 1 259 238 0 156 chr3 146190286 146190366 -71846792 - MER5A DNA MER1_type -129 60 4 645 211 31 137 chr3 146190460 146190782 -71846376 - HAL1b LINE L1 -753 595 308 258 265 0 0 chr3 146193811 146193879 -71843279 + LTR67 LTR ERVL 490 557 0 216 260 271 0 chr3 146194001 146194097 -71843061 - L2 LINE L2 -22 3250 3129 2358 95 0 3 chr3 146194672 146194967 -71842191 - AluSx SINE Alu -18 294 1 602 248 66 8 chr3 146195202 146195444 -71841714 - L2 LINE L2 -245 3068 2813 393 293 57 0 chr3 146198902 146199042 -71838116 - L1ME4a LINE L1 0 6121 5974 1100 253 83 38 chr3 146199055 146199498 -71837660 - L1ME4a LINE L1 -202 5919 5457 2012 122 30 44 chr3 146199665 146200026 -71837132 - L1MB8 LINE L1 0 6178 5823 355 304 127 41 chr3 146200253 146200622 -71836536 - L1ME4a LINE L1 -1117 5029 4629 28 29 0 0 chr3 146200775 146200810 -71836348 + AT_rich Low_complexity Low_complexity 1 35 0 327 347 67 4 chr3 146200982 146201221 -71835937 - L1ME4a LINE L1 -1886 4260 4007 2380 58 31 0 chr3 146201404 146201696 -71835462 - AluY SINE Alu -10 301 1 346 357 66 9 chr3 146201696 146202010 -71835148 - L1ME4a LINE L1 -2379 3767 3436 333 288 115 59 chr3 146202209 146202549 -71834609 - HAL1b LINE L1 -630 718 360 1248 150 4 58 chr3 146202739 146202965 -71834193 - MER20 DNA MER1_type -5 214 1 305 221 212 22 chr3 146204091 146204313 -71832845 - HAL1 LINE L1 0 2507 2244 510 125 0 0 chr3 146204514 146204594 -71832564 + (TTCC)n Simple_repeat Simple_repeat 3 82 0 216 0 0 0 chr3 146204625 146204649 -71832509 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 43513 33 22 2 chr3 146204649 146210663 -71826495 - L1PA3 LINE L1 -13 6142 10 1218 125 35 43 chr3 146210663 146210895 -71826263 + THE1C LTR MaLR 146 375 0 1521 140 68 7 chr3 146210897 146211190 -71825968 + L1MB4 LINE L1 5869 6179 -1 632 242 0 0 chr3 146211246 146211366 -71825792 + FLAM_A SINE Alu 11 130 -12 578 308 100 21 chr3 146211375 146211654 -71825504 - L1MC/D LINE L1 -2099 5709 5409 426 282 40 48 chr3 146212367 146212594 -71824564 - L3 LINE CR1 -753 824 600 761 216 140 14 chr3 146212913 146213135 -71824023 - MIR SINE MIR 0 262 13 222 311 56 0 chr3 146213814 146213904 -71823254 - MER5B DNA MER1_type -1 177 83 266 295 0 26 chr3 146213958 146214036 -71823122 - MER5B DNA MER1_type -102 76 1 189 107 0 0 chr3 146215318 146215346 -71821812 + (ATG)n Simple_repeat Simple_repeat 3 30 0 253 229 57 0 chr3 146215390 146215460 -71821698 - MIR SINE MIR -104 158 85 260 259 194 0 chr3 146217538 146217646 -71819512 - MIR3 SINE MIR -47 161 33 252 188 109 109 chr3 146217910 146218038 -71819120 - MIR SINE MIR -113 149 22 21 0 0 0 chr3 146220208 146220229 -71816929 + AT_rich Low_complexity Low_complexity 1 21 0 2257 92 0 33 chr3 146221262 146221566 -71815592 - AluSx SINE Alu -18 294 1 227 152 121 61 chr3 146221867 146221933 -71815225 + L2 LINE L2 3238 3307 -6 4338 50 6 0 chr3 146222505 146223041 -71814117 + L1PA8 LINE L1 5634 6172 0 290 262 0 37 chr3 146223491 146223598 -71813560 - MIR SINE MIR -122 140 38 437 202 34 0 chr3 146224949 146225038 -71812120 + MIR SINE MIR 81 172 -90 257 286 71 29 chr3 146226084 146226224 -71810934 - MIR SINE MIR -12 250 105 423 342 33 33 chr3 146229209 146229452 -71807706 + MIR SINE MIR 12 254 -8 281 286 81 24 chr3 146230407 146230563 -71806595 + MIR SINE MIR 20 188 -66 180 318 16 16 chr3 146230566 146230629 -71806529 - MIR SINE MIR -124 84 22 888 237 16 0 chr3 146231161 146231347 -71805811 + MER5A DNA MER1_type 1 189 0 2324 69 0 0 chr3 146231655 146231944 -71805214 - AluSg SINE Alu -21 289 1 3691 32 9 0 chr3 146232362 146232799 -71804359 - L1PA4 LINE L1 -3 6152 5712 351 294 166 84 chr3 146233681 146234181 -71802977 - L3 LINE CR1 -302 1275 735 621 274 79 8 chr3 146234192 146234386 -71802772 + MIR SINE MIR 2 220 -42 1877 105 3 79 chr3 146234386 146234736 -71802422 + AluSg SINE Alu 1 327 0 621 274 79 8 chr3 146234736 146234780 -71802378 + MIR SINE MIR 220 259 -3 246 368 121 29 chr3 146234806 146235154 -71802004 - L3 LINE CR1 -1013 564 185 466 318 109 14 chr3 146235599 146235819 -71801339 + MIR SINE MIR 13 253 -9 2289 82 0 3 chr3 146235900 146236204 -71800954 + AluSc SINE Alu 1 303 -6 615 81 0 0 chr3 146237101 146237187 -71799971 + (TCCA)n Simple_repeat Simple_repeat 1 86 0 630 257 39 92 chr3 146237382 146237446 -71799712 + L1ME4a LINE L1 5479 5545 -576 1874 152 0 7 chr3 146237446 146237756 -71799402 - AluSx SINE Alu -4 308 1 630 257 39 92 chr3 146237756 146238072 -71799086 + L1ME4a LINE L1 5545 5839 -282 180 0 0 0 chr3 146238124 146238144 -71799014 + (CA)n Simple_repeat Simple_repeat 2 21 0 248 304 71 9 chr3 146238451 146238563 -71798595 - L2 LINE L2 -223 3049 2931 198 71 0 0 chr3 146239299 146239327 -71797831 + (A)n Simple_repeat Simple_repeat 1 28 0 1173 200 33 47 chr3 146239327 146239362 -71797796 + MLT1A1 LTR MaLR 30 64 -301 1998 111 0 29 chr3 146239362 146239678 -71797480 - AluSc SINE Alu -2 307 1 1173 200 33 47 chr3 146239678 146239917 -71797241 + MLT1A1 LTR MaLR 64 300 -65 187 77 26 26 chr3 146240345 146240384 -71796774 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 462 268 42 24 chr3 146241381 146241549 -71795609 + MIR SINE MIR 88 258 -4 3351 178 174 24 chr3 146242350 146243196 -71793962 - L1MB8 LINE L1 -9 6169 5118 243 0 0 0 chr3 146243196 146243223 -71793935 + (TA)n Simple_repeat Simple_repeat 2 28 0 3351 178 174 24 chr3 146243223 146243458 -71793700 - L1MB8 LINE L1 -1060 5118 4920 208 211 40 105 chr3 146243785 146243861 -71793297 + MIR SINE MIR 90 160 -102 371 321 42 24 chr3 146245061 146245226 -71791932 + MIR SINE MIR 6 173 -89 924 257 68 11 chr3 146245241 146245506 -71791652 - MLT1J LTR MaLR -7 504 225 560 266 101 15 chr3 146245887 146246086 -71791072 - MIR SINE MIR -14 248 33 619 280 32 0 chr3 146246200 146246357 -71790801 + MIR SINE MIR 31 192 -70 185 174 22 22 chr3 146248315 146248361 -71788797 + MIR SINE MIR 89 134 -74 418 218 77 51 chr3 146248372 146248528 -71788630 + MER117 DNA MER1_type 27 186 -11 264 122 0 0 chr3 146249589 146249630 -71787528 + (TTCC)n Simple_repeat Simple_repeat 2 42 0 1799 137 7 4 chr3 146249633 146249910 -71787248 - AluSx SINE Alu -34 278 1 1777 162 0 13 chr3 146250419 146250721 -71786437 + AluSx SINE Alu 1 298 -14 506 297 22 22 chr3 146250862 146251091 -71786067 - L1ME4a LINE L1 -262 5859 5631 182 239 0 43 chr3 146252044 146252090 -71785068 - L3 LINE CR1 -538 1039 996 303 269 0 0 chr3 146252268 146252335 -71784823 + L2 LINE L2 3204 3270 -2 400 303 97 65 chr3 146252342 146253096 -71784062 + L2 LINE L2 2495 3268 -4 228 318 24 12 chr3 146253828 146253913 -71783245 + MIR SINE MIR 40 125 -83 344 301 98 0 chr3 146254080 146254223 -71782935 + MER103 DNA DNA 8 164 -2 24 53 0 0 chr3 146254847 146254885 -71782273 + AT_rich Low_complexity Low_complexity 1 38 0 1028 276 183 49 chr3 146255953 146256370 -71780788 + L2 LINE L2 2197 2557 -756 1920 115 0 33 chr3 146256370 146256675 -71780483 + AluSx SINE Alu 1 295 -17 1028 276 183 49 chr3 146256675 146257159 -71779999 + L2 LINE L2 2557 3236 -77 2846 202 83 47 chr3 146257616 146258586 -71778572 - L1MC5 LINE L1 -34 7927 6923 352 258 121 8 chr3 146258976 146259108 -71778050 + MIR3 SINE MIR 47 193 -15 546 285 30 0 chr3 146261176 146261341 -71775817 + MIR SINE MIR 90 259 -3 245 274 41 0 chr3 146261369 146261442 -71775716 + MIR SINE MIR 171 246 -16 238 333 109 7 chr3 146261896 146262034 -71775124 + L3 LINE CR1 1341 1492 -85 590 318 35 5 chr3 146263192 146263390 -71773768 - MIR SINE MIR -2 260 57 561 279 117 22 chr3 146263742 146264058 -71773100 - L1ME4a LINE L1 -2150 5658 5313 1910 146 3 0 chr3 146264299 146264600 -71772558 - AluSx SINE Alu 0 312 11 439 321 88 9 chr3 146264798 146265243 -71771915 - L1ME4a LINE L1 -1313 4833 4354 271 229 146 21 chr3 146267095 146267191 -71769967 - MIR3 SINE MIR -87 121 14 444 309 85 27 chr3 146267984 146268207 -71768951 + MIR SINE MIR 13 248 -14 336 314 65 0 chr3 146268500 146268624 -71768534 + MIR SINE MIR 75 206 -56 1154 278 88 31 chr3 146268650 146269304 -71767854 + L2 LINE L2 2528 3232 -81 358 261 23 31 chr3 146269366 146269496 -71767662 - MIR SINE MIR -29 233 105 252 211 90 24 chr3 146271919 146272005 -71765153 - MIR SINE MIR -46 162 77 431 273 50 56 chr3 146273485 146273683 -71763475 + L2 LINE L2 3117 3313 0 353 346 72 57 chr3 146274422 146275075 -71762083 - L2 LINE L2 -45 3227 2554 248 333 108 19 chr3 146275188 146275548 -71761610 - L2 LINE L2 -1360 1954 1563 460 356 23 19 chr3 146276711 146276927 -71760231 + MIR SINE MIR 15 231 -31 202 318 0 0 chr3 146278212 146278335 -71758823 + (TGGA)n Simple_repeat Simple_repeat 1 123 0 227 343 89 41 chr3 146278725 146278894 -71758264 - L2 LINE L2 0 3272 3096 251 146 18 0 chr3 146279340 146279395 -71757763 + (TG)n Simple_repeat Simple_repeat 1 56 0 188 280 0 0 chr3 146280641 146280691 -71756467 - L2 LINE L2 -2 3311 3262 301 304 33 0 chr3 146280814 146280906 -71756252 - MIR SINE MIR -62 200 106 233 322 211 7 chr3 146281291 146281443 -71755715 - MIR SINE MIR -6 256 74 410 265 239 18 chr3 146282037 146282309 -71754849 - MER102b DNA MER1_type -9 332 1 208 333 96 15 chr3 146282438 146282573 -71754585 + MIR SINE MIR 47 192 -70 199 330 76 34 chr3 146283853 146283971 -71753187 + L2 LINE L2 3143 3265 -7 544 289 0 8 chr3 146284338 146284466 -71752692 - L2 LINE L2 0 3313 3187 397 284 14 54 chr3 146285162 146285310 -71751848 + L2 LINE L2 3126 3267 -5 222 171 0 0 chr3 146285996 146286037 -71751121 + T-rich Low_complexity Low_complexity 1 41 0 1135 331 130 28 chr3 146286980 146288093 -71749065 - L2 LINE L2 -1897 1417 191 411 252 51 93 chr3 146288977 146289191 -71747967 + MIR3 SINE MIR 4 208 0 900 198 64 0 chr3 146289197 146289369 -71747789 - MER5A DNA MER1_type -1 188 6 377 212 1 103 chr3 146291842 146291964 -71745194 - MIR SINE MIR -63 145 44 694 154 0 0 chr3 146292164 146292274 -71744884 + L1M4 LINE L1 5606 5715 -463 295 276 99 46 chr3 146294804 146294956 -71742202 + L2 LINE L2 3107 3266 -6 1989 287 128 25 chr3 146295367 146296552 -71740606 + L2 LINE L2 1907 3313 0 648 380 120 18 chr3 146296561 146297296 -71739862 + L3 LINE CR1 694 1503 -74 1497 273 42 13 chr3 146297306 146297753 -71739405 - LTR16B LTR ERVL -4 460 1 339 154 140 14 chr3 146299517 146299660 -71737498 - Charlie7 DNA MER1_type -56 2556 2396 1576 287 112 35 chr3 146299862 146300379 -71736779 - L2 LINE L2 0 3313 2837 1744 135 59 3 chr3 146300379 146300668 -71736490 + AluSx SINE Alu 1 305 -7 1576 287 112 35 chr3 146300668 146301247 -71735911 - L2 LINE L2 -476 2837 2118 348 300 44 27 chr3 146301258 146301404 -71735754 + MIR3 SINE MIR 12 165 -65 254 278 142 91 chr3 146301859 146302035 -71735123 - MIR SINE MIR -22 240 56 310 295 90 65 chr3 146302639 146302839 -71734319 - MIR SINE MIR -1 261 57 961 207 75 24 chr3 146303166 146303379 -71733779 - MER58A DNA MER1_type 0 224 1 191 370 34 17 chr3 146303874 146303993 -71733165 - L2 LINE L2 0 3313 3193 244 286 79 63 chr3 146305304 146305430 -71731728 - L3 LINE CR1 -456 1121 994 301 283 112 45 chr3 146308014 146308283 -71728875 + MER102b DNA MER1_type 51 337 -4 619 262 33 27 chr3 146309201 146309384 -71727774 - MER5A DNA MER1_type -5 184 1 2230 97 7 0 chr3 146309389 146309688 -71727470 + AluSx SINE Alu 5 305 -7 940 186 5 0 chr3 146309703 146309891 -71727267 - MER53 DNA DNA 0 189 1 225 376 8 26 chr3 146310106 146310223 -71726935 - MIR SINE MIR -122 140 26 24 32 0 0 chr3 146312411 146312442 -71724716 + AT_rich Low_complexity Low_complexity 1 31 0 332 354 83 40 chr3 146312495 146312772 -71724386 - L3b LINE CR1 -2 1581 1293 1136 68 0 6 chr3 146313262 146313424 -71723734 - AluYa5 SINE Alu -150 161 1 181 206 0 0 chr3 146316289 146316323 -71720835 + MIR3 SINE MIR 164 197 -11 243 311 110 53 chr3 146316381 146316590 -71720568 + L3 LINE CR1 1343 1563 -14 314 281 119 50 chr3 146317269 146317429 -71719729 - MIR SINE MIR -27 181 11 1052 336 136 29 chr3 146318431 146319300 -71717858 + L3 LINE CR1 48 1009 -568 584 273 165 5 chr3 146319305 146319499 -71717659 - MIR SINE MIR -2 260 36 790 323 112 41 chr3 146319523 146320084 -71717074 + L3 LINE CR1 965 1565 -12 263 372 43 21 chr3 146321705 146321893 -71715265 - MIR SINE MIR -1 261 70 1206 251 122 26 chr3 146322049 146322435 -71714723 + LTR16C LTR ERVL 69 491 0 2025 107 7 29 chr3 146322845 146323153 -71714005 + AluSg SINE Alu 1 301 -9 220 254 17 17 chr3 146327044 146327103 -71710055 + CT-rich Low_complexity Low_complexity 3 61 0 181 314 43 14 chr3 146327281 146327351 -71709807 - L2 LINE L2 -208 3064 2993 769 252 14 0 chr3 146327458 146327605 -71709553 - MER63A DNA MER1_type -3 207 59 327 308 26 0 chr3 146327617 146327734 -71709424 - L1M4 LINE L1 -2954 3192 3073 306 125 0 0 chr3 146327734 146327782 -71709376 + (TTTC)n Simple_repeat Simple_repeat 3 50 0 413 193 0 48 chr3 146327782 146327865 -71709293 - MER63A DNA MER1_type 0 117 39 2515 87 3 0 chr3 146328380 146328692 -71708466 - AluSp SINE Alu 0 313 1 770 219 22 6 chr3 146328926 146329109 -71708049 - MER5A DNA MER1_type -2 187 2 2247 130 0 0 chr3 146329670 146329978 -71707180 + AluSx SINE Alu 1 308 -4 420 20 0 0 chr3 146330654 146330703 -71706455 + (CA)n Simple_repeat Simple_repeat 1 49 0 213 252 61 69 chr3 146331937 146332068 -71705090 - L2 LINE L2 -67 3246 3117 1200 229 71 17 chr3 146332471 146332824 -71704334 + MLT1C LTR MaLR 9 380 -87 261 274 128 7 chr3 146334838 146334977 -71702181 + MIR SINE MIR 13 150 -58 524 247 29 96 chr3 146337063 146337302 -71699856 - L1MC4 LINE L1 -668 7374 7152 1433 160 114 55 chr3 146339397 146339740 -71697418 + L1PA16 LINE L1 5804 6166 0 318 310 43 33 chr3 146340153 146340337 -71696821 - L1MC4 LINE L1 -2049 5759 5574 * 1455 249 52 65 chr3 146340322 146340989 -71696169 - L1MC4 LINE L1 -11 8031 7373 238 250 48 12 chr3 146341814 146341898 -71695260 - MIR SINE MIR -79 183 97 26 0 0 0 chr3 146343150 146343176 -71693982 + AT_rich Low_complexity Low_complexity 1 26 0 2588 146 81 2 chr3 146343176 146343609 -71693549 - L1PA16 LINE L1 -9 6157 5691 192 310 35 9 chr3 146344263 146344379 -71692779 + L3b LINE CR1 1259 1377 -206 269 293 95 54 chr3 146345365 146345512 -71691646 + L2 LINE L2 3119 3271 -1 225 300 71 0 chr3 146345854 146345924 -71691234 - MER91C DNA MER1_type -62 78 4 311 321 33 83 chr3 146346357 146346597 -71690561 - MIR SINE MIR -3 259 32 271 339 176 0 chr3 146347160 146347325 -71689833 + MER117 DNA MER1_type 4 197 0 712 223 27 22 chr3 146347822 146348006 -71689152 - MER5A DNA MER1_type -4 185 1 2041 134 7 0 chr3 146348838 146349136 -71688022 + AluSx SINE Alu 1 300 -12 2195 125 0 0 chr3 146349136 146349441 -71687717 + AluSg SINE Alu 1 305 -5 24 0 0 0 chr3 146349940 146349964 -71687194 + AT_rich Low_complexity Low_complexity 1 24 0 217 214 0 0 chr3 146350066 146350108 -71687050 + CT-rich Low_complexity Low_complexity 4 45 0 653 221 17 50 chr3 146350279 146350320 -71686838 + MER5B DNA MER1_type 4 45 -133 921 222 6 0 chr3 146350320 146350496 -71686662 + MER45A DNA AcHobo 1 177 -1 653 221 17 50 chr3 146350496 146350635 -71686523 + MER5B DNA MER1_type 45 178 0 657 213 90 21 chr3 146351010 146351198 -71685960 + MIR SINE MIR 49 249 -13 345 209 9 17 chr3 146351385 146351500 -71685658 + (CATA)n Simple_repeat Simple_repeat 2 115 0 188 167 24 24 chr3 146351736 146351778 -71685380 - L2 LINE L2 -8 3264 3223 767 174 8 0 chr3 146351882 146352014 -71685144 + FLAM_A SINE Alu 1 133 0 320 157 29 0 chr3 146352022 146352092 -71685066 + GA-rich Low_complexity Low_complexity 1 72 0 433 272 170 43 chr3 146352645 146352968 -71684190 + LTR16B LTR ERVL 1 364 -86 743 195 54 13 chr3 146354725 146354874 -71682284 - MLT1G1 LTR MaLR -11 584 430 758 239 148 27 chr3 146354926 146355189 -71681969 - MLT1G1 LTR MaLR -298 297 3 192 300 83 8 chr3 146355298 146355418 -71681740 - L2 LINE L2 -200 3072 2944 252 0 0 0 chr3 146356251 146356279 -71680879 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 7844 18 0 0 chr3 146356279 146357211 -71679947 - L1PA2 LINE L1 -24 6131 5200 809 118 0 15 chr3 146357896 146358031 -71679127 + FLAM_C SINE Alu 1 133 0 395 298 76 23 chr3 146358296 146358467 -71678691 + MIR3 SINE MIR 21 200 -8 312 310 60 0 chr3 146359035 146359135 -71678023 - MER117 DNA MER1_type -60 137 32 676 266 23 5 chr3 146359661 146359875 -71677283 - MIR SINE MIR -25 237 20 21 36 0 0 chr3 146359908 146359936 -71677222 + AT_rich Low_complexity Low_complexity 1 28 0 637 314 118 21 chr3 146361481 146362208 -71674950 - L2 LINE L2 -2 3311 2507 693 271 169 27 chr3 146363015 146363499 -71673659 + L2 LINE L2 2142 2694 -620 5354 70 4 40 chr3 146363602 146364348 -71672810 + L1PA8 LINE L1 5452 6170 -2 353 125 18 0 chr3 146364376 146364432 -71672726 - MER58 DNA MER1_type 0 2420 2364 1644 73 0 5 chr3 146364533 146364752 -71672406 - L1MA2 LINE L1 -318 5986 5769 300 258 90 42 chr3 146364748 146364915 -71672243 - L1MA2 LINE L1 -2379 5429 5255 * 385 267 17 100 chr3 146365179 146365419 -71671739 - L1MC4 LINE L1 -1 8041 7822 1465 198 78 52 chr3 146365443 146365868 -71671290 - L1ME2 LINE L1 -10 6154 5719 21 36 0 0 chr3 146365927 146365955 -71671203 + AT_rich Low_complexity Low_complexity 1 28 0 1972 141 7 3 chr3 146366137 146366428 -71670730 + AluSq SINE Alu 1 292 -21 350 293 9 9 chr3 146366955 146367061 -71670097 - L2 LINE L2 0 3313 3208 1098 240 48 51 chr3 146367250 146367625 -71669533 - MLT1A2 LTR MaLR 0 374 1 450 0 0 0 chr3 146367860 146367910 -71669248 + (TG)n Simple_repeat Simple_repeat 2 51 0 2451 265 105 12 chr3 146368202 146369167 -71667991 + L1MC4 LINE L1 6476 7617 -425 365 256 0 0 chr3 146369232 146369318 -71667840 + L1MC4 LINE L1 7956 8041 -1 183 353 47 0 chr3 146369322 146369407 -71667751 - L2 LINE L2 -605 2709 2621 190 287 31 31 chr3 146369496 146369625 -71667533 - L2 LINE L2 -829 2485 2357 414 319 7 21 chr3 146369828 146369969 -71667189 - L2 LINE L2 -963 2351 2213 337 261 15 45 chr3 146370149 146370283 -71666875 - MIR SINE MIR -55 153 24 1979 253 86 64 chr3 146370642 146372305 -71664853 - L1ME LINE L1 -4202 1878 191 2607 108 19 8 chr3 146375035 146375406 -71661752 - THE1C LTR MaLR 0 375 1 10263 120 49 3 chr3 146375406 146376916 -71660242 - THE1C-int LTR MaLR 0 1580 1 2896 90 0 3 chr3 146376916 146377292 -71659866 - THE1C LTR MaLR 0 375 1 324 232 113 46 chr3 146377388 146377539 -71659619 - MER5B DNA MER1_type 0 178 18 266 200 180 20 chr3 146377539 146377639 -71659519 - MER117 DNA MER1_type -68 129 14 609 198 198 0 chr3 146377674 146377831 -71659327 + MER5A DNA MER1_type 1 188 -1 257 329 30 43 chr3 146377855 146378019 -71659139 + MER5B DNA MER1_type 17 178 0 2067 214 47 5 chr3 146378398 146378846 -71658312 - MLT1C LTR MaLR 0 467 1 339 44 0 0 chr3 146379631 146379676 -71657482 + (CA)n Simple_repeat Simple_repeat 2 46 0 186 71 0 0 chr3 146381075 146381103 -71656055 + (TCTCTG)n Simple_repeat Simple_repeat 3 30 0 333 313 84 11 chr3 146382062 146382241 -71654917 + L2 LINE L2 2828 3019 -253 393 188 89 0 chr3 146382281 146382393 -71654765 - MIR SINE MIR -129 133 12 255 237 96 45 chr3 146382525 146382681 -71654477 + L2 LINE L2 3150 3313 0 223 319 108 16 chr3 146384010 146384195 -71652963 + MIR3 SINE MIR 7 208 0 1989 165 10 0 chr3 146385149 146385458 -71651700 + AluSx SINE Alu 1 312 0 198 0 0 0 chr3 146387374 146387396 -71649762 + (A)n Simple_repeat Simple_repeat 1 22 0 2103 120 0 3 chr3 146387398 146387689 -71649469 + AluSc SINE Alu 14 303 -6 335 257 46 0 chr3 146388430 146388539 -71648619 + MIR SINE MIR 59 172 -90 536 272 56 47 chr3 146388961 146389303 -71647855 - L1ME4a LINE L1 -2 6119 5775 410 293 103 17 chr3 146389889 146390121 -71647037 - L2 LINE L2 -2 3270 3019 341 348 81 4 chr3 146390457 146390716 -71646442 - L2 LINE L2 -606 2708 2430 456 295 16 75 chr3 146392403 146392657 -71644501 + MIR SINE MIR 24 262 0 37 0 0 0 chr3 146392680 146392717 -71644441 + AT_rich Low_complexity Low_complexity 1 37 0 43488 33 25 2 chr3 146392717 146398733 -71638425 - L1PA2 LINE L1 0 6155 4 27 0 0 0 chr3 146399829 146399856 -71637302 + AT_rich Low_complexity Low_complexity 1 27 0 349 214 56 0 chr3 146402171 146402260 -71634898 + MIR SINE MIR 71 164 -98 554 253 138 27 chr3 146402266 146402491 -71634667 - MIR SINE MIR 0 262 13 1051 193 11 0 chr3 146402496 146402683 -71634475 - MER5A DNA MER1_type 0 189 1 291 282 26 0 chr3 146404464 146404542 -71632616 + L2 LINE L2 3188 3267 -5 1169 306 147 34 chr3 146405400 146406749 -71630409 - L2 LINE L2 -173 3099 1603 279 306 90 28 chr3 146407244 146407388 -71629770 - MIR SINE MIR -105 157 5 243 311 66 0 chr3 146407484 146407606 -71629552 + MIR SINE MIR 132 261 -1 807 271 14 9 chr3 146409455 146409676 -71627482 - MER58A DNA MER1_type -1 223 2 214 220 0 51 chr3 146410213 146410272 -71626886 + (TTTA)n Simple_repeat Simple_repeat 4 59 0 748 211 26 32 chr3 146412758 146412948 -71624210 + MER5A DNA MER1_type 1 189 0 405 274 166 60 chr3 146413955 146414335 -71622823 - L2 LINE L2 -3 3310 2891 352 348 21 0 chr3 146414357 146414498 -71622660 - MIR SINE MIR -73 189 46 2185 119 14 17 chr3 146415014 146415375 -71621783 - L1MA5A LINE L1 -1 6296 5937 228 194 0 16 chr3 146415549 146415611 -71621547 - L1MCa LINE L1 -4371 2055 1995 312 308 116 30 chr3 146415649 146416530 -71620628 - L1M4 LINE L1 -1300 4846 3890 1036 273 39 41 chr3 146416897 146417285 -71619873 - L1ME3A LINE L1 -222 5948 5562 1119 212 79 4 chr3 146417296 146417537 -71619621 - HERVL40 LTR ERVL -2580 2950 2692 1077 240 90 16 chr3 146417537 146417849 -71619309 + MLT1D LTR MaLR 165 499 -6 263 273 0 0 chr3 146417947 146418002 -71619156 - HERVL40 LTR ERVL -3225 2305 2251 * 2792 249 39 85 chr3 146418000 146418976 -71618182 - HERVL40 LTR ERVL -4599 931 1 1559 240 97 25 chr3 146418977 146419461 -71617697 - LTR40a LTR ERVL 0 519 1 2308 223 36 72 chr3 146419470 146420384 -71616774 - L1MD3 LINE L1 -1843 6152 5272 3689 188 23 45 chr3 146420484 146421305 -71615853 - L1MA9 LINE L1 -34 6278 5476 1675 158 83 27 chr3 146421316 146421652 -71615506 - MSTA LTR MaLR -53 375 21 363 294 105 14 chr3 146421694 146421837 -71615321 - MLT1H LTR MaLR -276 273 118 9269 35 0 0 chr3 146421845 146422938 -71614220 - L1PA2 LINE L1 -1886 4260 3168 9376 32 0 1 chr3 146422939 146424820 -71612338 + L1PA2 LINE L1 4276 6155 0 266 200 29 57 chr3 146424849 146424919 -71612239 - MLT1H LTR MaLR -427 122 55 12202 59 4 29 chr3 146424919 146426574 -71610584 - HUERS-P1 LTR ERV1 -1770 4493 2880 3604 105 69 2 chr3 146426572 146427097 -71610061 - HUERS-P1 LTR ERV1 -5700 563 4 * 1172 83 0 0 chr3 146427099 146427244 -71609914 - LTR8 LTR ERV1 0 691 547 1074 179 4 29 chr3 146427244 146427484 -71609674 - L1MA9 LINE L1 -681 5487 5254 3722 187 54 1 chr3 146427495 146428256 -71608902 + L1 LINE L1 4044 4844 -1302 1818 156 122 6 chr3 146428257 146428584 -71608574 - MER47A DNA MER2_type -1 365 1 1451 201 6 33 chr3 146428585 146428918 -71608240 + L1 LINE L1 4844 5167 -979 186 43 0 0 chr3 146428938 146428961 -71608197 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1888 163 0 10 chr3 146428967 146429261 -71607897 - AluJo SINE Alu -11 301 11 2450 229 129 31 chr3 146429294 146429558 -71607600 - L1MD3 LINE L1 -865 5281 5044 2623 59 0 0 chr3 146429558 146429861 -71607297 - AluY SINE Alu -8 303 1 2450 229 129 31 chr3 146429861 146429930 -71607228 - L1MD3 LINE L1 -1102 5044 4983 336 24 0 0 chr3 146429930 146429971 -71607187 + (TG)n Simple_repeat Simple_repeat 2 42 0 2450 229 129 31 chr3 146429971 146430673 -71606485 - L1MD3 LINE L1 -1163 4983 4143 185 184 41 0 chr3 146430677 146430726 -71606432 + CT-rich Low_complexity Low_complexity 1 51 0 12170 172 34 44 chr3 146430777 146433556 -71603602 + L1MC3 LINE L1 5025 7777 -8 1086 286 51 55 chr3 146433628 146434089 -71603069 + L1MC4a LINE L1 5254 5713 -2095 2202 101 0 13 chr3 146434089 146434395 -71602763 - AluSc SINE Alu -7 302 1 1086 286 51 55 chr3 146434395 146434584 -71602574 + L1MC4a LINE L1 5713 5901 -1907 1130 57 0 0 chr3 146434838 146434978 -71602180 + AluY SINE Alu 167 306 -5 269 305 20 46 chr3 146435005 146435156 -71602002 + HAL1 LINE L1 1210 1356 -1151 568 274 91 33 chr3 146435253 146435560 -71601598 - L1MC/D LINE L1 -2086 5722 5398 644 233 97 45 chr3 146435565 146435895 -71601263 + HAL1 LINE L1 1406 1752 -755 1682 161 33 7 chr3 146436294 146436588 -71600570 - AluJb SINE Alu 0 301 1 27 62 0 0 chr3 146437063 146437111 -71600047 + AT_rich Low_complexity Low_complexity 1 48 0 451 265 106 7 chr3 146437224 146437375 -71599783 + MIR3 SINE MIR 37 202 -6 188 283 48 114 chr3 146437372 146437538 -71599620 + L3 LINE CR1 361 515 -1062 * 2870 139 17 21 chr3 146437975 146438443 -71598715 - MLT1C LTR MaLR -1 466 1 227 278 14 14 chr3 146438985 146439057 -71598101 - MLT1I LTR MaLR -263 146 75 331 328 71 15 chr3 146439436 146439634 -71597524 + L3 LINE CR1 739 947 -630 230 180 20 20 chr3 146439678 146439728 -71597430 + (TG)n Simple_repeat Simple_repeat 2 51 0 531 313 122 9 chr3 146440106 146440336 -71596822 + MIR SINE MIR 5 260 -2 250 226 89 48 chr3 146440354 146440478 -71596680 - L1ME LINE L1 -255 5866 5738 582 240 128 0 chr3 146440539 146440696 -71596462 - MER5A DNA MER1_type -6 183 4 491 284 81 20 chr3 146440739 146440936 -71596222 + L3 LINE CR1 1180 1388 -189 2962 221 85 29 chr3 146442025 146442741 -71594417 - MER21B LTR ERV1 -107 756 1 2142 110 28 3 chr3 146442775 146443066 -71594092 + AluSg SINE Alu 1 298 -12 236 296 113 42 chr3 146443235 146443377 -71593781 + L2 LINE L2 3113 3264 -8 657 282 45 33 chr3 146444760 146445005 -71592153 - MIR SINE MIR -2 260 13 2478 164 20 52 chr3 146445340 146445786 -71591372 + MSTB1 LTR MaLR 1 432 0 319 257 55 35 chr3 146448870 146449003 -71588155 + L1ME1 LINE L1 6009 6108 -58 354 183 0 0 chr3 146449005 146449076 -71588082 + (TG)n Simple_repeat Simple_repeat 1 71 0 180 111 0 0 chr3 146449076 146449103 -71588055 + (GA)n Simple_repeat Simple_repeat 1 27 0 290 336 15 15 chr3 146449530 146449667 -71587491 - ERVL LTR ERVL -1722 3763 3627 405 0 0 0 chr3 146449671 146449716 -71587442 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 1923 169 15 46 chr3 146449716 146450106 -71587052 - L1PA16 LINE L1 -15 6151 5774 778 137 24 5 chr3 146450120 146450260 -71586898 - L1ME LINE L1 -370 5786 5657 626 258 128 84 chr3 146450316 146450708 -71586450 + MLT1I LTR MaLR 1 409 0 305 323 19 12 chr3 146451131 146451292 -71585866 - ERVL LTR ERVL -4583 1181 1020 236 232 54 0 chr3 146451937 146451993 -71585165 - LTR67 LTR ERVL 0 557 499 1668 209 86 27 chr3 146452768 146453142 -71584016 - MSTD LTR MaLR 0 396 1 365 325 92 25 chr3 146453806 146453969 -71583189 + L2 LINE L2 3099 3272 0 325 271 110 0 chr3 146454368 146454486 -71582672 + MIR SINE MIR 108 238 -24 2125 231 37 24 chr3 146454751 146455288 -71581870 + L1ME3A LINE L1 5588 6131 -39 287 266 123 75 chr3 146456207 146456459 -71580699 + MLT1J LTR MaLR 110 373 -138 755 281 40 0 chr3 146456683 146456882 -71580276 - ERVL LTR ERVL -2215 3549 3343 183 243 54 54 chr3 146456882 146456956 -71580202 + L3 LINE CR1 1244 1317 -260 3679 305 64 62 chr3 146456984 146457346 -71579812 - ERVL LTR ERVL -2569 3195 2835 2036 128 3 13 chr3 146457346 146457651 -71579507 - AluSx SINE Alu -8 304 3 3679 305 64 62 chr3 146457651 146457851 -71579307 - ERVL LTR ERVL -2929 2835 2637 5843 31 0 114 chr3 146457851 146458681 -71578477 - L1PA3 LINE L1 -3 6152 5418 3679 305 64 62 chr3 146458681 146459251 -71577907 - ERVL LTR ERVL -3127 2637 2070 1800 175 7 7 chr3 146459251 146459554 -71577604 - AluJo SINE Alu -9 303 1 3679 305 64 62 chr3 146459554 146460662 -71576496 - ERVL LTR ERVL -3694 2070 883 648 276 97 26 chr3 146460742 146460970 -71576188 - LTR50 LTR ERVL -548 247 4 401 313 115 53 chr3 146461004 146461455 -71575703 + MLT1K LTR MaLR 17 495 -93 439 299 109 28 chr3 146462021 146462232 -71574926 - MIR SINE MIR -7 255 28 200 263 193 0 chr3 146462272 146462386 -71574772 - MIR SINE MIR -3 259 124 412 298 87 43 chr3 146462761 146462969 -71574189 + L2 LINE L2 2670 2886 -428 1862 157 3 3 chr3 146463544 146463850 -71573308 + AluJb SINE Alu 1 306 -6 467 207 21 57 chr3 146464326 146464466 -71572692 + MIR SINE MIR 84 218 -44 180 0 0 0 chr3 146464759 146464779 -71572379 + (A)n Simple_repeat Simple_repeat 1 20 0 210 167 0 0 chr3 146467214 146467250 -71569908 + (TAA)n Simple_repeat Simple_repeat 1 36 0 380 273 104 19 chr3 146467493 146467647 -71569511 + LTR16C LTR ERVL 224 390 -101 297 214 29 0 chr3 146467783 146467853 -71569305 - MIR SINE MIR -52 210 139 528 314 138 32 chr3 146467853 146468376 -71568782 + L3 LINE CR1 956 1533 -44 291 258 124 90 chr3 146469757 146469918 -71567240 + L2 LINE L2 2838 2992 -280 221 0 35 0 chr3 146469918 146469947 -71567211 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1940 108 37 0 chr3 146469950 146470219 -71566939 - AluSg SINE Alu -28 282 4 291 258 124 90 chr3 146470219 146470286 -71566872 + L2 LINE L2 2993 3078 -194 325 239 86 124 chr3 146470290 146470499 -71566659 + LTR33 LTR ERVL 16 216 -305 789 310 94 11 chr3 146470519 146470880 -71566278 - L2 LINE L2 -546 2768 2378 205 94 62 16 chr3 146470948 146471012 -71566146 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 955 221 33 108 chr3 146471176 146471620 -71565538 - L1M4 LINE L1 -1857 4289 3878 3719 52 0 5 chr3 146471620 146472059 -71565099 - L1PA5 LINE L1 0 6154 5718 955 221 33 108 chr3 146472059 146472070 -71565088 - L1M4 LINE L1 -2268 3878 3868 * 1677 217 5 54 chr3 146472066 146472476 -71564682 - L1MA10 LINE L1 -1 6333 5944 1426 194 23 0 chr3 146472623 146472886 -71564272 - L1MA10 LINE L1 -266 5923 5655 397 229 153 0 chr3 146472879 146473010 -71564148 - L1M4 LINE L1 -2319 3827 3677 * 297 335 57 31 chr3 146473249 146473443 -71563715 - L1MEc LINE L1 -6086 310 112 1106 214 53 1 chr3 146473482 146473738 -71563420 - MER21B LTR ERV1 -374 489 200 2424 285 50 12 chr3 146473753 146474661 -71562497 - HAL1 LINE L1 -1105 1402 461 217 241 0 0 chr3 146476456 146476514 -71560644 + (TA)n Simple_repeat Simple_repeat 2 59 0 1300 263 159 17 chr3 146476517 146477096 -71560062 - Charlie7 DNA MER1_type -1923 689 29 226 288 103 61 chr3 146477446 146477922 -71559236 + HAL1 LINE L1 798 1293 -1214 2963 248 40 80 chr3 146477927 146478835 -71558323 + L1MDb LINE L1 146 1016 -5527 2690 218 91 26 chr3 146478836 146479552 -71557606 + L1MDb LINE L1 1537 2310 -4230 2641 171 66 23 chr3 146479552 146480036 -71557122 + MLT1D LTR MaLR 1 505 0 2690 218 91 26 chr3 146480036 146480111 -71557047 + L1MDb LINE L1 2310 2379 -4161 6697 190 43 25 chr3 146480120 146481485 -71555673 + L1MB5 LINE L1 3831 5211 -969 6056 35 0 0 chr3 146481485 146482161 -71554997 + L1PA4 LINE L1 5477 6152 -3 6697 190 43 25 chr3 146482161 146482457 -71554701 + L1MB5 LINE L1 5211 5500 -680 3274 153 30 9 chr3 146482459 146483016 -71554142 + L1MB5 LINE L1 5587 6155 -19 1785 225 78 13 chr3 146483025 146483473 -71553685 + L1MD2 LINE L1 5879 6355 -4 231 264 46 23 chr3 146484395 146484482 -71552676 - MLT1I LTR MaLR -25 384 296 436 254 8 41 chr3 146484599 146484721 -71552437 - MLT1J2 LTR MaLR -288 162 45 259 244 244 19 chr3 146484843 146484999 -71552159 - MIR SINE MIR 0 262 72 1136 162 17 0 chr3 146485891 146486070 -71551088 + MER5A DNA MER1_type 4 185 -4 220 311 14 14 chr3 146486079 146486153 -71551005 - MIR3 SINE MIR -31 177 104 2664 121 30 43 chr3 146486235 146486673 -71550485 + MSTB1 LTR MaLR 1 432 0 215 227 23 0 chr3 146487553 146487597 -71549561 + L2 LINE L2 3136 3180 -92 2261 105 0 3 chr3 146487774 146488079 -71549079 - AluSx SINE Alu -8 304 1 404 169 26 0 chr3 146489356 146489433 -71547725 - MLT1I LTR MaLR 0 409 331 535 281 6 36 chr3 146489541 146489708 -71547450 - MLT1I LTR MaLR -231 178 17 857 217 11 65 chr3 146490716 146490900 -71546258 - MER45A DNA AcHobo -4 174 1 200 250 44 59 chr3 146491044 146491112 -71546046 - MIR3 SINE MIR -135 73 7 21 57 0 0 chr3 146491387 146491422 -71545736 + AT_rich Low_complexity Low_complexity 1 35 0 6445 228 80 47 chr3 146491631 146492257 -71544901 + L1ME1 LINE L1 2922 3526 -2640 2175 204 48 44 chr3 146492257 146492758 -71544400 + MLT1D LTR MaLR 1 503 -2 6445 228 80 47 chr3 146492758 146495191 -71541967 + L1ME1 LINE L1 3526 6070 -96 355 286 25 34 chr3 146495575 146495694 -71541464 - MIR SINE MIR -138 124 7 195 300 109 36 chr3 146497683 146497793 -71539365 + L2 LINE L2 2873 2990 -282 219 268 0 125 chr3 146497909 146498021 -71539137 + L2 LINE L2 3160 3257 -15 579 252 16 0 chr3 146498204 146498331 -71538827 - MIR SINE MIR -46 216 88 552 357 8 0 chr3 146498766 146499001 -71538157 - MIR SINE MIR -11 251 15 21 0 0 0 chr3 146499016 146499037 -71538121 + AT_rich Low_complexity Low_complexity 1 21 0 354 319 56 19 chr3 146499306 146499466 -71537692 - MIR SINE MIR -75 187 22 186 310 50 115 chr3 146499603 146499803 -71537355 + L2 LINE L2 2906 3092 -180 560 291 101 6 chr3 146499920 146500099 -71537059 + MIR SINE MIR 40 235 -27 304 385 44 0 chr3 146500152 146500287 -71536871 + L2 LINE L2 3126 3266 -6 21 0 0 0 chr3 146501487 146501508 -71535650 + AT_rich Low_complexity Low_complexity 1 21 0 364 316 32 11 chr3 146502362 146502552 -71534606 + L1M4c LINE L1 1247 1440 -4944 556 225 56 6 chr3 146502563 146502723 -71534435 - L1ME2 LINE L1 -39 6125 5958 824 320 88 19 chr3 146503629 146504067 -71533091 - L2 LINE L2 -247 3066 2594 604 269 178 26 chr3 146504067 146504450 -71532708 + MLT1J1 LTR MaLR 1 441 -5 670 220 87 37 chr3 146504533 146504751 -71532407 - MIR SINE MIR -32 230 2 340 307 51 88 chr3 146505925 146506221 -71530937 + MLT1I LTR MaLR 108 392 -17 234 91 0 0 chr3 146506290 146506323 -71530835 + (TG)n Simple_repeat Simple_repeat 2 34 0 269 324 19 9 chr3 146507310 146507415 -71529743 - MIR3 SINE MIR -24 184 79 386 313 0 11 chr3 146507508 146507690 -71529468 + (TG)n Simple_repeat Simple_repeat 1 180 0 206 351 69 30 chr3 146509910 146510041 -71527117 + L2 LINE L2 3137 3272 0 189 284 266 18 chr3 146510790 146510899 -71526259 + L2 LINE L2 684 819 -2495 1460 333 109 20 chr3 146510943 146512138 -71525020 + L2 LINE L2 934 2234 -1080 2120 171 45 5 chr3 146512394 146512774 -71524384 + MSTD LTR MaLR 2 396 0 352 255 108 113 chr3 146512791 146513022 -71524136 + MIR SINE MIR 4 233 -29 264 397 15 15 chr3 146514619 146514823 -71522335 + L2 LINE L2 2144 2347 -967 527 311 114 36 chr3 146514847 146515268 -71521890 + L2 LINE L2 2486 2939 -375 690 319 79 33 chr3 146515469 146515861 -71521297 + L2 LINE L2 2861 3270 -2 234 350 130 22 chr3 146515913 146516281 -71520877 + L2 LINE L2 2366 2773 -541 291 269 25 50 chr3 146516285 146516445 -71520713 + L1ME3A LINE L1 5793 5948 -222 26 50 0 0 chr3 146517097 146517137 -71520021 + AT_rich Low_complexity Low_complexity 1 40 0 588 252 0 0 chr3 146517889 146518024 -71519134 - MIR SINE MIR -8 254 120 23 33 0 0 chr3 146518481 146518511 -71518647 + AT_rich Low_complexity Low_complexity 1 30 0 1599 225 44 0 chr3 146518515 146518875 -71518283 - L1MC4 LINE L1 -481 7561 7186 688 161 8 0 chr3 146518907 146519025 -71518133 + L1MC4 LINE L1 7914 8032 -10 288 265 51 10 chr3 146519025 146519123 -71518035 - LTR67 LTR ERVL -57 500 399 642 274 61 15 chr3 146519730 146519927 -71517231 + MIR SINE MIR 40 245 -17 1379 281 77 23 chr3 146519959 146520386 -71516772 + LTR16A LTR ERVL 1 450 0 190 372 80 29 chr3 146520540 146520677 -71516481 + L2 LINE L2 2969 3112 -160 464 260 101 41 chr3 146520744 146521169 -71515989 + LTR33A LTR ERVL 18 505 -18 1675 165 36 7 chr3 146521531 146521834 -71515324 - AluJb SINE Alu 0 312 1 525 135 0 0 chr3 146522642 146522731 -71514427 + (GGAA)n Simple_repeat Simple_repeat 2 90 0 198 143 0 0 chr3 146523353 146523388 -71513770 + (TC)n Simple_repeat Simple_repeat 1 35 0 274 284 0 0 chr3 146523902 146523976 -71513182 + MIR3 SINE MIR 113 186 -22 181 338 13 13 chr3 146524154 146524231 -71512927 - L2 LINE L2 -497 2817 2741 3947 38 0 0 chr3 146525686 146526220 -71510938 - L1P5 LINE L1 -686 5465 4927 4167 49 0 2 chr3 146526220 146526700 -71510458 + L1PA4 LINE L1 5669 6155 0 2293 103 3 3 chr3 146526724 146527065 -71510093 + L1P LINE L1 5026 5366 -780 25 65 0 0 chr3 146527183 146527229 -71509929 + AT_rich Low_complexity Low_complexity 1 46 0 355 284 99 34 chr3 146527724 146528076 -71509082 + L1M4 LINE L1 2149 2523 -3623 607 103 0 0 chr3 146528083 146528161 -71508997 - Alu SINE Alu -12 297 220 288 164 49 33 chr3 146528515 146528576 -71508582 - L1M2 LINE L1 -566 5725 5664 * 1619 181 46 3 chr3 146528554 146528858 -71508300 + L1M3 LINE L1 5387 5703 -465 424 232 28 21 chr3 146529033 146529175 -71507983 + L1M4 LINE L1 2856 2998 -3148 1449 180 35 22 chr3 146529253 146529564 -71507594 + MER58D DNA MER1_type 47 361 -25 311 309 0 42 chr3 146529946 146530111 -71507047 + G-rich Low_complexity Low_complexity 2 159 0 301 310 32 11 chr3 146530792 146530979 -71506179 + L1M4c LINE L1 1250 1440 -4944 530 210 41 11 chr3 146530990 146531150 -71506008 - L1ME2 LINE L1 -43 6127 5958 2169 115 0 0 chr3 146532463 146532749 -71504409 + AluSx SINE Alu 1 286 -26 1279 95 18 0 chr3 146533510 146533679 -71503479 - AluSg/x SINE Alu -7 305 134 2106 114 0 13 chr3 146533679 146533985 -71503173 - AluSx SINE Alu -10 302 1 251 248 159 0 chr3 146534187 146534300 -71502858 - L1M4 LINE L1 -1332 4814 4684 962 266 35 12 chr3 146534324 146534752 -71502406 + L1M4c LINE L1 1528 1965 -4598 1149 203 28 72 chr3 146534765 146535254 -71501904 + MLT1C LTR MaLR 5 467 0 427 229 48 95 chr3 146535256 146535304 -71501854 + L1M4c LINE L1 1972 2021 -4542 1923 147 7 0 chr3 146535304 146535590 -71501568 + AluSx SINE Alu 7 294 -18 427 229 48 95 chr3 146535590 146535772 -71501386 + L1M4c LINE L1 2021 2191 -4372 33 66 0 0 chr3 146535796 146535857 -71501301 + AT_rich Low_complexity Low_complexity 1 61 0 293 271 0 0 chr3 146536185 146536270 -71500888 - HAL1 LINE L1 -943 1564 1480 261 299 46 49 chr3 146536301 146536605 -71500553 - L1MEd LINE L1 -4920 1199 897 249 98 0 0 chr3 146539075 146539116 -71498042 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 434 252 9 28 chr3 146539116 146539223 -71497935 - L2 LINE L2 -13 3300 3196 403 315 54 87 chr3 146539787 146540028 -71497130 + L2 LINE L2 265 497 -2817 254 279 16 109 chr3 146540471 146540654 -71496504 + L2 LINE L2 2701 2866 -448 252 233 163 47 chr3 146540926 146541055 -71496103 + L2 LINE L2 3169 3312 -1 264 364 13 0 chr3 146541103 146541180 -71495978 + MIR SINE MIR 28 105 -103 25106 43 2 0 chr3 146541432 146545447 -71491711 - L1PA5 LINE L1 -4 6150 2133 6645 15 0 6 chr3 146545508 146546309 -71490849 - L1PA2 LINE L1 -1 6154 5359 * 8178 31 0 2 chr3 146546297 146547343 -71489815 + L1PA2 LINE L1 4313 5356 -790 7603 66 2 10 chr3 146547340 146548416 -71488742 - L1PA5 LINE L1 -3999 2147 1081 * 729 88 0 0 chr3 146548394 146548496 -71488662 - L1PA5 LINE L1 -6044 102 1 * 184 217 0 22 chr3 146548540 146548586 -71488572 + MIR SINE MIR 159 203 -59 315 302 28 0 chr3 146549345 146549451 -71487707 + MIR SINE MIR 28 136 -126 315 307 75 82 chr3 146549554 146549991 -71487167 - L2 LINE L2 -1 3312 2879 213 287 170 11 chr3 146550098 146550192 -71486966 - L2 LINE L2 -665 2649 2541 356 213 0 0 chr3 146550368 146550591 -71486567 + (CA)n Simple_repeat Simple_repeat 1 223 0 576 278 18 24 chr3 146550592 146550761 -71486397 - MIR SINE MIR -84 178 11 2684 90 3 0 chr3 146550821 146551175 -71485983 - THE1A LTR MaLR 0 355 1 11955 88 3 1 chr3 146551179 146552751 -71484407 - THE1A-int LTR MaLR -4 1576 1 2726 85 6 0 chr3 146552751 146553104 -71484054 - THE1A LTR MaLR 0 355 1 26 0 0 0 chr3 146553149 146553175 -71483983 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr3 146553397 146553426 -71483732 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr3 146553850 146553879 -71483279 + AT_rich Low_complexity Low_complexity 1 29 0 545 286 57 86 chr3 146554059 146554934 -71482224 + L1M4 LINE L1 2384 3233 -2913 318 272 88 16 chr3 146555608 146555733 -71481425 + MER5A DNA MER1_type 55 188 -1 244 311 42 21 chr3 146555954 146556237 -71480921 + L1M4 LINE L1 4271 4559 -1587 312 325 61 18 chr3 146556326 146556440 -71480718 + L1M4 LINE L1 4672 4790 -1356 1969 297 46 16 chr3 146556484 146557221 -71479937 + L2 LINE L2 2061 2819 -495 3895 217 23 6 chr3 146557229 146558134 -71479024 + MER63C DNA MER1_type 2 922 -8 840 277 148 17 chr3 146558145 146558557 -71478601 + L2 LINE L2 2844 3309 -4 245 286 24 12 chr3 146558924 146559008 -71478150 + L1P5 LINE L1 5522 5606 -548 1992 183 95 0 chr3 146559019 146559408 -71477750 + MSTB LTR MaLR 1 426 0 194 204 0 19 chr3 146559520 146559574 -71477584 + GA-rich Low_complexity Low_complexity 2 54 0 554 287 99 20 chr3 146559574 146559926 -71477232 + L1ME4a LINE L1 5738 6117 -4 611 315 138 29 chr3 146563200 146563585 -71473573 - LTR16A LTR ERVL -31 426 1 23 33 0 0 chr3 146563701 146563731 -71473427 + AT_rich Low_complexity Low_complexity 1 30 0 415 206 72 0 chr3 146563775 146563872 -71473286 + FRAM SINE Alu 71 174 -2 485 266 71 61 chr3 146564391 146565058 -71472100 + L1MEd LINE L1 694 1414 -4863 1566 202 58 58 chr3 146565217 146565251 -71471907 - L1M4 LINE L1 -1863 4283 4250 243 61 0 0 chr3 146565251 146565284 -71471874 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 1566 202 58 58 chr3 146565284 146565355 -71471803 - L1M4 LINE L1 -1896 4250 4180 222 37 0 0 chr3 146565355 146565382 -71471776 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1566 202 58 58 chr3 146565382 146565436 -71471722 - L1M4 LINE L1 -1966 4180 4127 1618 147 10 65 chr3 146565436 146565743 -71471415 + AluJb SINE Alu 1 290 -22 1566 202 58 58 chr3 146565743 146566096 -71471062 - L1M4 LINE L1 -2018 4128 3769 4695 129 27 10 chr3 146566096 146566911 -71470247 - Tigger3b DNA MER2_type 0 1231 403 27 29 0 0 chr3 146566930 146566964 -71470194 + AT_rich Low_complexity Low_complexity 1 34 0 294 125 21 0 chr3 146566988 146567036 -71470122 - Tigger3b DNA MER2_type -845 386 338 327 146 0 0 chr3 146567036 146567091 -71470067 + (TA)n Simple_repeat Simple_repeat 2 56 0 240 138 0 17 chr3 146567099 146567157 -71470001 - Tigger3b DNA MER2_type -901 330 274 * 321 26 0 0 chr3 146567155 146567194 -71469964 - Tigger3b DNA MER2_type -1129 102 64 289 250 19 0 chr3 146567201 146567309 -71469849 + L1M4 LINE L1 3141 3250 -2896 303 346 75 23 chr3 146567332 146567546 -71469612 + L1M4 LINE L1 3605 3829 -2317 3833 92 28 0 chr3 146567833 146568376 -71468782 - L1PA10 LINE L1 -5 6163 5606 314 182 45 0 chr3 146569130 146569196 -71467962 - L1MD3 LINE L1 -802 7193 7125 22 0 0 0 chr3 146569198 146569220 -71467938 + AT_rich Low_complexity Low_complexity 1 22 0 986 338 101 12 chr3 146569262 146570094 -71467064 + L1MEd LINE L1 3 908 -5211 * 4295 230 41 14 chr3 146570091 146570739 -71466419 + L1MB8 LINE L1 2451 3080 -3066 2303 161 59 5 chr3 146570739 146571143 -71466015 - MSTB LTR MaLR 0 426 1 4295 230 41 14 chr3 146571143 146571892 -71465266 + L1MB8 LINE L1 3080 3885 -2261 3114 207 46 15 chr3 146571882 146572653 -71464505 + L1MB8 LINE L1 5353 6150 -28 * 2639 138 36 2 chr3 146572653 146573067 -71464091 + MSTA LTR MaLR 1 428 0 3114 207 46 15 chr3 146573067 146573084 -71464074 + L1MB8 LINE L1 6150 6165 -13 1852 150 22 64 chr3 146573138 146573328 -71463830 + MLT1B LTR MaLR 1 167 -223 2409 48 0 0 chr3 146573328 146573621 -71463537 + L1PA5 LINE L1 5862 6154 0 1852 150 22 64 chr3 146573621 146573837 -71463321 + MLT1B LTR MaLR 167 390 0 272 245 64 48 chr3 146573837 146574025 -71463133 + L1MEd LINE L1 1059 1249 -4870 1074 257 23 12 chr3 146574059 146574401 -71462757 + L1M4 LINE L1 3896 4241 -1905 366 267 92 42 chr3 146574409 146574626 -71462532 + HAL1b LINE L1 703 930 -418 312 316 96 55 chr3 146574742 146575201 -71461957 + L1PB4 LINE L1 253 730 -6119 12176 210 33 16 chr3 146575288 146580938 -71456220 + L1PB4 LINE L1 751 6847 -12 3282 30 0 0 chr3 146580980 146581344 -71455814 - L1PA3 LINE L1 -1 6154 5791 17842 32 0 0 chr3 146581346 146583968 -71453190 + L1PA3 LINE L1 3300 5920 -235 6118 54 0 0 chr3 146583946 146584711 -71452447 + L1P LINE L1 1090 1854 -4292 * 5721 63 0 0 chr3 146584713 146585425 -71451733 - L1P LINE L1 -5434 712 1 315 0 0 0 chr3 146586179 146586214 -71450944 + (CA)n Simple_repeat Simple_repeat 2 36 0 841 184 0 22 chr3 146586686 146586822 -71450336 + FLAM_C SINE Alu 1 133 0 1769 262 105 65 chr3 146588116 146588688 -71448470 + MLT1H1 LTR MaLR 1 555 0 2590 47 0 0 chr3 146589290 146589587 -71447571 + AluY SINE Alu 1 297 -14 825 232 38 5 chr3 146590116 146590301 -71446857 + MER63A DNA MER1_type 17 207 -3 470 262 50 14 chr3 146591308 146591449 -71445709 + L2 LINE L2 3168 3313 0 531 267 111 6 chr3 146592329 146592509 -71444649 + MIR SINE MIR 21 219 -43 203 179 0 0 chr3 146592515 146592554 -71444604 + (TTA)n Simple_repeat Simple_repeat 3 41 0 1944 110 0 4 chr3 146593324 146593587 -71443571 - AluSq SINE Alu -12 301 40 235 311 184 42 chr3 146593804 146593994 -71443164 - L2 LINE L2 0 3272 3056 1064 301 88 3 chr3 146594007 146594393 -71442765 - LTR16A LTR ERVL -11 439 21 261 319 35 0 chr3 146594405 146594521 -71442637 - L2 LINE L2 -206 3066 2947 232 227 0 0 chr3 146595163 146595207 -71441951 + CT-rich Low_complexity Low_complexity 1 44 0 380 253 0 0 chr3 146595790 146595869 -71441289 + MER103 DNA DNA 43 121 -45 1062 298 136 33 chr3 146596205 146596726 -71440432 - MLT1K LTR MaLR 0 588 14 491 274 177 13 chr3 146597187 146597424 -71439734 - L3 LINE CR1 -18 1559 1284 489 331 101 0 chr3 146597828 146598006 -71439152 - MER91A DNA MER1_type 0 196 1 728 267 51 17 chr3 146599433 146599667 -71437491 - MIR SINE MIR 0 262 22 1845 163 148 6 chr3 146600739 146601153 -71436005 - MLT1D LTR MaLR 0 505 1 617 303 95 5 chr3 146603160 146603381 -71433777 + MIR SINE MIR 10 250 -12 211 321 0 0 chr3 146603612 146603665 -71433493 + polypyrimidine Low_complexity Low_complexity 2 54 0 315 230 18 124 chr3 146603830 146603943 -71433215 + MER5A DNA MER1_type 9 109 -80 769 249 24 28 chr3 146605557 146605770 -71431388 + MIR SINE MIR 8 219 -43 231 241 24 72 chr3 146605971 146606054 -71431104 - L2 LINE L2 -16 3256 3178 393 273 0 15 chr3 146606226 146606358 -71430800 - L1ME1 LINE L1 -5 6161 6032 232 222 0 0 chr3 146606385 146606430 -71430728 + L1ME LINE L1 5862 5906 -215 189 74 0 0 chr3 146606445 146606472 -71430686 + (TG)n Simple_repeat Simple_repeat 2 28 0 941 334 119 22 chr3 146606621 146607393 -71429765 - L2 LINE L2 -237 3035 2184 590 231 13 58 chr3 146607393 146607549 -71429609 - MLT1G LTR MaLR 0 590 442 306 295 50 68 chr3 146608471 146608793 -71428365 + L1ME3A LINE L1 547 862 -5208 755 304 70 43 chr3 146608800 146609179 -71427979 + L1ME3A LINE L1 895 1262 -4999 1237 191 44 132 chr3 146609179 146609588 -71427570 + MLT1A2 LTR MaLR 1 373 -1 755 304 70 43 chr3 146609588 146609981 -71427177 + L1ME3A LINE L1 1262 1688 -4573 1237 305 45 10 chr3 146610038 146610549 -71426609 + L1ME3A LINE L1 4550 5078 -1002 8261 83 1 0 chr3 146610601 146611690 -71425468 + L1P LINE L1 3637 4726 -1420 1435 265 37 0 chr3 146611704 146612078 -71425080 + L1ME3A LINE L1 5231 5618 -486 423 231 75 44 chr3 146612072 146612232 -71424926 + L1ME3A LINE L1 5932 6096 -8 * 217 286 143 20 chr3 146613645 146613743 -71423415 + L2 LINE L2 3203 3312 -1 231 358 147 16 chr3 146614406 146614976 -71422182 - L2 LINE L2 -342 2972 2328 1663 226 71 27 chr3 146615223 146615701 -71421457 + MLT1D LTR MaLR 1 499 -6 228 349 15 0 chr3 146616265 146616331 -71420827 + L2 LINE L2 3190 3256 -16 181 238 24 0 chr3 146616367 146616409 -71420749 + MER5B DNA MER1_type 1 43 -135 * 491 257 0 18 chr3 146616401 146616514 -71420644 - MER5A DNA MER1_type -75 114 4 347 257 59 0 chr3 146617420 146617521 -71419637 - MLT1K LTR MaLR -6 582 476 213 283 0 0 chr3 146618706 146618759 -71418399 - L2 LINE L2 -13 3300 3248 262 312 117 19 chr3 146618772 146618926 -71418232 - MIR3 SINE MIR -5 203 35 556 288 206 10 chr3 146619856 146620148 -71417010 - L2 LINE L2 -3 3269 2921 361 224 164 48 chr3 146620189 146620354 -71416804 - MIR SINE MIR -8 254 71 1490 113 55 0 chr3 146620356 146620594 -71416564 - L1MA9 LINE L1 0 6376 6126 204 257 0 0 chr3 146620598 146620668 -71416490 + (CATATA)n Simple_repeat Simple_repeat 4 73 0 2532 139 5 0 chr3 146620691 146621086 -71416072 - L1MA9 LINE L1 -585 5791 5395 1877 152 58 79 chr3 146621086 146621642 -71415516 - MLT2A2 LTR ERVL 0 554 1 195 100 0 0 chr3 146621675 146621705 -71415453 + (TTTTTG)n Simple_repeat Simple_repeat 5 34 0 635 129 122 20 chr3 146621724 146621871 -71415287 - L1MA9 LINE L1 -836 5374 5213 800 204 19 38 chr3 146621871 146622028 -71415130 + MER21B LTR ERV1 1 154 -709 * 1088 179 72 76 chr3 146622010 146622273 -71414885 + MER21B LTR ERV1 550 811 -52 9566 176 15 8 chr3 146622335 146624154 -71413004 - L1MA9 LINE L1 -995 5215 3385 4410 243 65 39 chr3 146624141 146625303 -71411855 - L1MA9 LINE L1 -4949 1192 1 * 688 215 5 112 chr3 146625334 146625437 -71411721 - MER63A DNA MER1_type -1483 205 137 2392 104 0 3 chr3 146625437 146625746 -71411412 + AluSc SINE Alu 1 308 -1 688 215 5 112 chr3 146625746 146625865 -71411293 - MER63A DNA MER1_type -1551 137 7 1174 236 112 40 chr3 146626295 146626722 -71410436 - MLT1C LTR MaLR -4 463 6 1454 208 57 5 chr3 146626724 146627094 -71410064 - Zaphod DNA AcHobo -48 3983 3595 2362 212 133 81 chr3 146627124 146627181 -71409977 - Zaphod DNA AcHobo -3068 963 910 2078 124 0 23 chr3 146627181 146627488 -71409670 + AluSq SINE Alu 2 301 -12 2362 212 133 81 chr3 146627488 146627772 -71409386 - Zaphod DNA AcHobo -3121 910 642 5005 144 1 3 chr3 146627772 146628542 -71408616 + L1MA3 LINE L1 5533 6301 -4 2362 212 133 81 chr3 146628542 146629096 -71408062 - Zaphod DNA AcHobo -3389 642 21 2612 27 0 3 chr3 146629699 146629994 -71407164 + AluY SINE Alu 1 294 -17 229 263 18 0 chr3 146630107 146630164 -71406994 + Charlie8 DNA MER1_type 2341 2398 -19 462 299 115 14 chr3 146630170 146630387 -71406771 + MIR SINE MIR 21 259 -3 23 78 0 0 chr3 146630961 146631012 -71406146 + AT_rich Low_complexity Low_complexity 1 51 0 196 359 16 0 chr3 146631350 146631396 -71405762 + L3 LINE CR1 461 507 -1070 415 288 184 17 chr3 146631396 146631608 -71405550 + MIR SINE MIR 4 253 -9 443 269 167 18 chr3 146631629 146631856 -71405302 + L3 LINE CR1 558 818 -759 788 234 78 16 chr3 146631873 146632065 -71405093 + MER63A DNA MER1_type 7 210 0 415 291 38 89 chr3 146632205 146632418 -71404740 + MIR SINE MIR 13 214 -48 2024 148 0 10 chr3 146632420 146632725 -71404433 + AluJb SINE Alu 1 302 -10 793 234 189 60 chr3 146632810 146633276 -71403882 - MLT1H LTR MaLR -10 539 14 389 262 79 52 chr3 146633291 146633529 -71403629 + L1M1 LINE L1 5337 5580 -620 25 65 0 0 chr3 146633608 146633654 -71403504 + AT_rich Low_complexity Low_complexity 1 46 0 2199 95 7 7 chr3 146633805 146634193 -71402965 + L1MA1 LINE L1 5999 6386 0 379 251 166 18 chr3 146634348 146634511 -71402647 + L3 LINE CR1 946 1132 -445 279 297 21 48 chr3 146634510 146634655 -71402503 - L2 LINE L2 0 3313 3173 * 256 156 0 0 chr3 146634655 146634700 -71402458 + Ricksha DNA DNA 40 84 -3162 * 6343 130 51 10 chr3 146634699 146635741 -71401417 + Ricksha DNA DNA 2155 3239 -7 236 313 21 0 chr3 146636571 146636667 -71400491 - L1ME4a LINE L1 -90 6031 5934 626 292 75 26 chr3 146636791 146637058 -71400100 - L2 LINE L2 0 3313 3034 1411 224 86 63 chr3 146637063 146637553 -71399605 - MLT1F1 LTR MaLR 0 567 67 532 273 74 28 chr3 146637609 146637882 -71399276 - L2 LINE L2 -283 3030 2750 467 304 140 33 chr3 146637882 146638247 -71398911 - L1ME4a LINE L1 -2004 5804 5401 362 291 63 53 chr3 146638619 146638808 -71398350 + MIR SINE MIR 61 251 -11 211 360 50 30 chr3 146638864 146638964 -71398194 + L2 LINE L2 3158 3259 -13 194 0 0 37 chr3 146639004 146639031 -71398127 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 397 245 145 72 chr3 146639425 146639743 -71397415 + MER102b DNA MER1_type 1 341 0 579 257 78 52 chr3 146640237 146640559 -71396599 - LTR16A LTR ERVL -22 428 27 197 274 98 72 chr3 146641863 146642016 -71395142 - MIR SINE MIR -71 191 35 32 26 0 0 chr3 146642079 146642118 -71395040 + AT_rich Low_complexity Low_complexity 1 39 0 966 345 172 25 chr3 146642289 146643185 -71393973 + L3 LINE CR1 241 1297 -280 2403 82 3 0 chr3 146643185 146643479 -71393679 - AluY SINE Alu -16 295 1 966 345 172 25 chr3 146643479 146643572 -71393586 + L3 LINE CR1 1297 1375 -202 500 294 53 11 chr3 146644216 146644456 -71392702 - MIR SINE MIR -12 250 1 244 321 24 36 chr3 146644943 146645027 -71392131 + MIR SINE MIR 2 84 -178 615 297 93 15 chr3 146645548 146645807 -71391351 - L2 LINE L2 -3 3310 3032 238 286 99 68 chr3 146645947 146646108 -71391050 + MLT1J LTR MaLR 151 316 -195 805 324 107 8 chr3 146646284 146646667 -71390491 - L2 LINE L2 -340 2974 2554 517 273 40 20 chr3 146646876 146647026 -71390132 - MIR SINE MIR -75 187 35 419 208 139 0 chr3 146647241 146647342 -71389816 - MIR SINE MIR -110 152 38 633 256 181 23 chr3 146647643 146647909 -71389249 + L2 LINE L2 3004 3311 -2 312 285 54 54 chr3 146651100 146651230 -71385928 - MIR SINE MIR -60 148 19 545 301 24 84 chr3 146651354 146651686 -71385472 + L2 LINE L2 2885 3196 -76 265 128 21 0 chr3 146651850 146651897 -71385261 + L2 LINE L2 3265 3312 -1 226 289 0 53 chr3 146652219 146652371 -71384787 + L1ME2 LINE L1 5255 5398 -2410 459 242 40 54 chr3 146653378 146653527 -71383631 + L1ME2 LINE L1 6018 6164 0 2766 238 27 24 chr3 146653639 146654378 -71382780 + L1ME1 LINE L1 45 785 -5611 * 10250 221 52 32 chr3 146654372 146656788 -71380370 + L1ME1 LINE L1 2452 4967 -1268 342 0 0 0 chr3 146656788 146656826 -71380332 + (TA)n Simple_repeat Simple_repeat 2 39 0 10250 221 52 32 chr3 146656826 146658117 -71379041 + L1ME1 LINE L1 4967 6230 -5 1051 88 2 98 chr3 146658232 146658433 -71378725 + HUERS-P1 LTR ERV1 5794 5951 -312 1703 41 0 0 chr3 146658444 146658639 -71378519 - L1PA4 LINE L1 -3 6152 5958 1024 9 0 0 chr3 146658639 146658755 -71378403 + L1PA4 LINE L1 5854 5969 -186 1996 159 3 6 chr3 146658755 146659081 -71378077 + HUERS-P1 LTR ERV1 5939 6263 0 3708 112 47 21 chr3 146659081 146659652 -71377506 + LTR8 LTR ERV1 1 586 -105 186 43 0 0 chr3 146659652 146659675 -71377483 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 279 247 37 68 chr3 146660101 146660291 -71376867 - Charlie7 DNA MER1_type 0 2612 2429 274 250 104 10 chr3 146660274 146660370 -71376788 - Charlie7 DNA MER1_type -2507 105 1 * 503 267 187 14 chr3 146660460 146660808 -71376350 + L1ME4a LINE L1 5711 6118 -3 2369 81 3 7 chr3 146661369 146661679 -71375479 + AluSc SINE Alu 1 309 0 258 303 10 20 chr3 146663033 146663132 -71374026 - MIR3 SINE MIR -2 206 109 25 0 0 0 chr3 146664438 146664463 -71372695 + AT_rich Low_complexity Low_complexity 1 25 0 1119 249 0 15 chr3 146665517 146665778 -71371380 + MIR SINE MIR 6 262 0 21 82 0 0 chr3 146666058 146666107 -71371051 + AT_rich Low_complexity Low_complexity 1 49 0 2268 110 0 0 chr3 146666624 146666916 -71370242 - AluSg SINE Alu -18 292 1 409 328 76 22 chr3 146668229 146668629 -71368529 - LTR16B LTR ERVL -12 438 1 818 254 35 0 chr3 146669252 146669453 -71367705 - MIR SINE MIR -14 248 41 260 275 100 0 chr3 146670037 146670117 -71367041 - L2 LINE L2 0 3272 3185 210 310 0 62 chr3 146670249 146670362 -71366796 + L2 LINE L2 2955 3060 -212 313 260 13 0 chr3 146670381 146670458 -71366700 + CT-rich Low_complexity Low_complexity 3 80 0 257 318 0 11 chr3 146670469 146670557 -71366601 - MIR SINE MIR -13 249 163 476 269 46 23 chr3 146671106 146671299 -71365859 + MIR SINE MIR 5 200 -61 727 236 156 27 chr3 146671391 146671616 -71365542 + MIR SINE MIR 5 258 -4 180 250 33 65 chr3 146671735 146671827 -71365331 - L2 LINE L2 -220 3052 2964 492 296 27 20 chr3 146671909 146672066 -71365092 - MER5B DNA MER1_type -4 174 19 849 183 7 0 chr3 146672078 146672220 -71364938 - MER5A DNA MER1_type 0 189 47 1200 169 96 32 chr3 146672220 146672469 -71364689 - MSTA LTR MaLR 0 428 164 766 262 160 17 chr3 146673701 146674113 -71363045 + MLT1K LTR MaLR 2 472 -4 359 287 103 0 chr3 146674551 146674687 -71362471 - MIR SINE MIR -7 255 106 752 288 92 52 chr3 146674698 146675121 -71362037 - MLT1K LTR MaLR -87 501 62 235 210 62 62 chr3 146675431 146675512 -71361646 - MER5A DNA MER1_type 0 189 109 579 249 73 17 chr3 146677695 146677872 -71359286 + MIR SINE MIR 5 191 -71 1937 162 0 7 chr3 146678126 146678429 -71358729 + AluJo SINE Alu 1 301 -11 25 31 0 0 chr3 146678737 146678769 -71358389 + AT_rich Low_complexity Low_complexity 1 32 0 272 143 18 0 chr3 146679631 146679687 -71357471 + CT-rich Low_complexity Low_complexity 1 57 0 465 188 82 0 chr3 146680968 146681053 -71356105 + MLT1A2 LTR MaLR 1 92 -282 2320 213 46 106 chr3 146681055 146682080 -71355078 - L1MC5 LINE L1 -334 7627 6665 9215 182 9 13 chr3 146682082 146684479 -71352679 + L1PA14 LINE L1 3767 6161 0 3024 140 26 41 chr3 146684516 146685052 -71352106 + L1MB3 LINE L1 5590 6117 -66 265 93 0 0 chr3 146685143 146685186 -71351972 + L1MB4 LINE L1 6138 6180 0 315 259 102 86 chr3 146685821 146686018 -71351140 + MIR SINE MIR 33 232 -30 964 350 83 21 chr3 146686751 146687241 -71349917 + L3 LINE CR1 1022 1547 -30 2033 224 0 6 chr3 146687241 146687607 -71349551 + MLT1A1 LTR MaLR 1 364 -1 964 350 83 21 chr3 146687607 146687636 -71349522 + L3 LINE CR1 1547 1573 -4 264 268 137 46 chr3 146687661 146687814 -71349344 + MIR SINE MIR 2 168 -94 1762 221 68 14 chr3 146689277 146689720 -71347438 - MLT1C LTR MaLR 0 467 1 244 403 13 0 chr3 146690443 146690597 -71346561 + L2 LINE L2 2553 2708 -606 255 287 22 81 chr3 146690977 146691113 -71346045 + MIR SINE MIR 20 147 -115 1837 170 0 38 chr3 146692886 146693204 -71343954 + AluJb SINE Alu 1 306 -6 320 339 154 12 chr3 146693218 146693634 -71343524 + L2 LINE L2 1813 2287 -1027 1858 253 79 13 chr3 146693890 146694487 -71342671 + L1ME3 LINE L1 4754 5389 -757 1995 125 3 10 chr3 146694513 146694839 -71342319 - AluSx SINE Alu 0 312 1 1703 213 25 11 chr3 146694839 146695192 -71341966 - MLT1A1 LTR MaLR -7 358 1 2882 262 31 3 chr3 146695196 146695944 -71341214 + L1ME3 LINE L1 5394 6162 0 1955 142 137 38 chr3 146697985 146698407 -71338751 + MLT2B1 LTR ERVL 1 464 -56 400 352 176 13 chr3 146698645 146699026 -71338132 - L3 LINE CR1 -732 845 403 227 381 0 3 chr3 146699323 146699447 -71337711 - MIR SINE MIR -53 155 32 265 355 59 20 chr3 146700496 146700648 -71336510 - MIR SINE MIR -79 183 26 191 293 123 28 chr3 146700916 146701022 -71336136 + L3b LINE CR1 1277 1392 -191 1951 206 44 11 chr3 146702276 146702709 -71334449 + MLT1C LTR MaLR 18 464 -3 728 178 78 89 chr3 146702984 146703107 -71334051 - MER5A DNA MER1_type 0 189 67 2390 94 0 0 chr3 146703107 146703405 -71333753 - AluY SINE Alu -13 298 1 728 178 78 89 chr3 146703405 146703472 -71333686 - MER5A DNA MER1_type -122 67 1 723 360 68 47 chr3 146705521 146705868 -71331290 - HERV16 LTR ERVL -3554 1442 1104 742 193 174 0 chr3 146705868 146706029 -71331129 - MER5A DNA MER1_type 0 189 1 723 360 68 47 chr3 146706029 146707094 -71330064 - HERV16 LTR ERVL -3892 1104 1 197 241 98 62 chr3 146707623 146707735 -71329423 - L2 LINE L2 -67 3246 3131 224 260 115 21 chr3 146707879 146707975 -71329183 + MIR SINE MIR 56 160 -102 751 183 68 161 chr3 146707999 146708397 -71328761 - L1ME1 LINE L1 -4 6162 5802 2997 249 89 37 chr3 146708409 146709401 -71327757 - L1MEc LINE L1 -5284 1112 70 210 297 27 0 chr3 146709434 146709508 -71327650 + MIR SINE MIR 172 247 -15 283 298 21 11 chr3 146710188 146710282 -71326876 + L2 LINE L2 3178 3272 0 2273 111 0 3 chr3 146711480 146711778 -71325380 - AluSq SINE Alu -16 297 1 479 309 52 36 chr3 146712379 146712631 -71324527 + MIR SINE MIR 5 260 -2 429 273 134 24 chr3 146712628 146712837 -71324321 + MIR SINE MIR 18 249 -13 * 4452 188 51 14 chr3 146713060 146714006 -71323152 - L1MC2 LINE L1 0 7777 6137 7347 215 39 11 chr3 146714106 146716904 -71320254 - L1MC3 LINE L1 -743 5821 3824 1505 168 80 122 chr3 146716904 146717315 -71319843 + MSTD LTR MaLR 3 396 0 7347 215 39 11 chr3 146717315 146717439 -71319719 - L1MC3 LINE L1 -2740 3824 3705 2874 210 83 11 chr3 146717426 146718545 -71318613 - L1MC3 LINE L1 -4765 1799 570 * 1321 305 36 23 chr3 146718729 146719207 -71317951 - L1MC3 LINE L1 -5561 484 1 23 33 0 0 chr3 146719434 146719464 -71317694 + AT_rich Low_complexity Low_complexity 1 30 0 192 319 53 32 chr3 146720888 146720982 -71316176 + L2 LINE L2 3137 3232 -40 266 328 25 42 chr3 146722441 146722560 -71314598 + MIR SINE MIR 17 133 -75 285 268 49 12 chr3 146722652 146722734 -71314424 + MIR3 SINE MIR 104 188 -20 464 211 18 44 chr3 146722794 146722908 -71314250 + MIR SINE MIR 93 203 -59 1435 330 142 18 chr3 146722983 146723964 -71313194 + L2 LINE L2 1875 2976 -338 1441 175 0 15 chr3 146724146 146724415 -71312743 - L1P LINE L1 -929 5217 4953 1213 99 29 0 chr3 146724413 146724584 -71312574 + L1P LINE L1 4773 4948 -1198 * 240 35 0 0 chr3 146725747 146725776 -71311382 + (T)n Simple_repeat Simple_repeat 1 29 0 2767 120 0 3 chr3 146725776 146726168 -71310990 - LTR9B LTR ERV1 -84 560 170 43593 34 22 2 chr3 146726169 146732199 -71304959 - L1PA2 LINE L1 0 6155 3 216 0 0 0 chr3 146733091 146733115 -71304043 + (TG)n Simple_repeat Simple_repeat 2 25 0 502 267 119 78 chr3 146733561 146734240 -71302918 - L2 LINE L2 0 3313 2599 449 192 0 0 chr3 146734554 146734627 -71302531 - MER5A DNA MER1_type -107 82 10 1579 228 17 89 chr3 146734713 146735297 -71301861 + MER34 LTR ERV1 1 542 0 927 184 17 16 chr3 146735446 146735791 -71301367 + MER63 DNA MER1_type 1 1020 -42 337 158 19 15 chr3 146736182 146736270 -71300888 - MIR SINE MIR -71 137 48 442 247 148 50 chr3 146736321 146736465 -71300693 - HAL1 LINE L1 -891 1616 1449 2189 109 0 13 chr3 146736465 146736769 -71300389 - AluSg SINE Alu -10 300 1 442 247 148 50 chr3 146736769 146736806 -71300352 - HAL1 LINE L1 -1058 1449 1417 * 542 287 221 38 chr3 146736786 146737001 -71300157 - HAL1 LINE L1 -1327 1180 1006 2330 58 41 7 chr3 146737001 146737294 -71299864 - AluY SINE Alu -8 303 1 542 287 221 38 chr3 146737294 146737656 -71299502 - HAL1 LINE L1 -1501 1006 497 7266 75 3 3 chr3 146737776 146738723 -71298435 + L1PA8 LINE L1 5217 6164 -8 32 26 0 0 chr3 146738971 146739010 -71298148 + AT_rich Low_complexity Low_complexity 1 39 0 376 278 6 56 chr3 146739103 146739265 -71297893 - HAL1 LINE L1 -145 2362 2209 1022 205 26 0 chr3 146739280 146739470 -71297688 + MER58A DNA MER1_type 30 224 0 4237 269 102 43 chr3 146739503 146740093 -71297065 - HAL1 LINE L1 -342 2165 1612 1858 207 16 34 chr3 146740093 146740474 -71296684 - MLT1A2 LTR MaLR 0 374 1 4237 269 102 43 chr3 146740474 146741916 -71295242 - HAL1 LINE L1 -895 1612 12 237 298 53 44 chr3 146742154 146742268 -71294890 + L2 LINE L2 2873 2987 -285 194 174 22 0 chr3 146742556 146742602 -71294556 + GA-rich Low_complexity Low_complexity 2 48 0 1099 271 38 29 chr3 146742733 146743080 -71294078 + MLT1I LTR MaLR 58 407 -2 372 327 223 13 chr3 146743126 146743444 -71293714 - L3 LINE CR1 -1 1576 1192 1241 148 5 10 chr3 146744068 146744271 -71292887 + MER3 DNA MER1_type 3 204 -5 2115 109 0 7 chr3 146744328 146744634 -71292524 + AluSx SINE Alu 31 334 0 984 247 20 12 chr3 146744703 146744954 -71292204 + MIR SINE MIR 8 260 -2 355 311 45 31 chr3 146745333 146745619 -71291539 + L1MC1 LINE L1 771 1060 -5059 1916 184 127 51 chr3 146745649 146746122 -71291036 - MLT2B2 LTR ERVL 0 515 7 400 274 46 85 chr3 146746164 146746762 -71290396 + L1MC1 LINE L1 1121 1858 -4272 745 303 26 33 chr3 146746957 146747412 -71289746 - L1M4 LINE L1 -2168 3978 3527 685 287 49 56 chr3 146747526 146747737 -71289421 - L1M4 LINE L1 -2930 3216 3005 1922 125 50 0 chr3 146747737 146747858 -71289300 + AluSx SINE Alu 1 115 -197 189 74 0 0 chr3 146747858 146747885 -71289273 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1922 125 50 0 chr3 146747885 146748044 -71289114 + AluSx SINE Alu 115 295 -17 685 287 49 56 chr3 146748044 146748407 -71288751 - L1M4 LINE L1 -3141 3005 2646 936 248 157 88 chr3 146748450 146749131 -71288027 + L1MC1 LINE L1 4291 5018 -1111 355 145 0 53 chr3 146749131 146749207 -71287951 - L1PB4 LINE L1 -4 6152 6081 18917 85 2 0 chr3 146749234 146751716 -71285442 + L1PA5 LINE L1 11 2498 -3648 23021 39 0 6 chr3 146751717 146755150 -71282008 + L1PA5 LINE L1 2722 6151 -3 5107 133 15 9 chr3 146755160 146755440 -71281718 - L1PB4 LINE L1 -83 6073 5796 357 24 0 0 chr3 146755440 146755482 -71281676 + (TG)n Simple_repeat Simple_repeat 2 43 0 5107 133 15 9 chr3 146755482 146755537 -71281621 - L1PB4 LINE L1 -360 5796 5743 2674 123 8 3 chr3 146755537 146755910 -71281248 + THE1C LTR MaLR 1 375 0 5107 133 15 9 chr3 146755910 146756370 -71280788 - L1PB4 LINE L1 -413 5743 5272 2817 87 0 14 chr3 146756372 146756597 -71280561 + THE1B LTR MaLR 1 221 -143 1041 186 11 0 chr3 146756597 146756780 -71280378 - L1PB4 LINE L1 -13 6143 5959 2817 87 0 14 chr3 146756780 146756923 -71280235 + THE1B LTR MaLR 221 364 0 11533 107 37 0 chr3 146756923 146758447 -71278711 + THE1B-int LTR MaLR 1 1580 0 2865 96 3 6 chr3 146758447 146758812 -71278346 + THE1B LTR MaLR 1 364 0 1098 266 85 36 chr3 146758849 146759615 -71277543 + L1MC1 LINE L1 5026 5757 -388 204 182 0 0 chr3 146759627 146759671 -71277487 + (CATATA)n Simple_repeat Simple_repeat 5 48 0 6183 113 19 36 chr3 146759678 146760307 -71276851 - Tigger1 DNA MER2_type -1 2417 1808 2334 67 0 3 chr3 146760307 146760621 -71276537 - AluY SINE Alu 0 313 1 6183 113 19 36 chr3 146760621 146760963 -71276195 - Tigger1 DNA MER2_type -610 1808 1462 * 6689 142 22 57 chr3 146760952 146762167 -71274991 - Tigger1 DNA MER2_type -1245 1173 1 267 193 60 12 chr3 146762167 146762250 -71274908 + (CATATA)n Simple_repeat Simple_repeat 5 91 0 257 248 99 10 chr3 146762379 146762480 -71274678 + L1ME LINE L1 5787 5896 -274 28 29 0 0 chr3 146762617 146762652 -71274506 + AT_rich Low_complexity Low_complexity 1 35 0 405 307 64 0 chr3 146762713 146762915 -71274243 - L1M4 LINE L1 -1821 4325 4111 228 350 14 8 chr3 146763688 146763803 -71273355 + MER5B DNA MER1_type 18 123 -55 499 196 170 0 chr3 146763805 146763917 -71273241 - MLT1H LTR MaLR -4 545 415 * 738 253 5 24 chr3 146763912 146764099 -71273059 - MLT1H LTR MaLR -381 168 1 937 267 108 17 chr3 146764524 146764876 -71272282 - MLT1K LTR MaLR -13 575 192 828 168 7 7 chr3 146765053 146765196 -71271962 - L1MC4 LINE L1 -507 7535 7393 763 196 41 122 chr3 146765196 146765466 -71271692 + MER21B LTR ERV1 1 248 -615 * 1771 205 73 37 chr3 146765458 146765950 -71271208 + MER21B LTR ERV1 376 811 -52 1009 142 0 6 chr3 146765982 146766144 -71271014 - L1MC4a LINE L1 -505 7303 7143 193 131 16 148 chr3 146766144 146766205 -71270953 + MER5B DNA MER1_type 126 178 0 613 237 0 0 chr3 146766429 146766543 -71270615 + MER81 DNA DNA 1 114 0 393 207 11 11 chr3 146767176 146767263 -71269895 - LTR33 LTR ERVL -18 503 417 832 142 10 117 chr3 146767265 146767371 -71269787 - MER5B DNA MER1_type -1 177 100 1461 200 16 16 chr3 146767371 146767691 -71269467 + MER33 DNA MER1_type 1 320 -4 832 142 10 117 chr3 146767691 146767781 -71269377 - MER5B DNA MER1_type -78 100 2 737 292 76 34 chr3 146767782 146768046 -71269112 - LTR33 LTR ERVL -98 423 149 310 196 0 0 chr3 146768415 146768471 -71268687 - MIR SINE MIR -13 249 194 341 252 112 9 chr3 146770267 146770374 -71266784 + L2 LINE L2 3141 3258 -14 799 233 22 33 chr3 146770641 146770821 -71266337 + MER45A DNA AcHobo 1 178 0 24 0 0 0 chr3 146771090 146771114 -71266044 + AT_rich Low_complexity Low_complexity 1 24 0 193 73 24 49 chr3 146772746 146772787 -71264371 + (TTTC)n Simple_repeat Simple_repeat 1 40 0 180 152 0 0 chr3 146772933 146772966 -71264192 + CT-rich Low_complexity Low_complexity 2 34 0 238 203 91 0 chr3 146773078 146773139 -71264019 - MIR3 SINE MIR -38 170 105 210 324 42 63 chr3 146773224 146773462 -71263696 + L2 LINE L2 2828 3060 -212 324 0 0 0 chr3 146775772 146775808 -71261350 + (CA)n Simple_repeat Simple_repeat 1 36 0 400 281 92 75 chr3 146776069 146776361 -71260797 - MLT1J LTR MaLR -95 416 120 2154 102 14 7 chr3 146777022 146777316 -71259842 + AluSx SINE Alu 1 296 -16 1119 249 0 15 chr3 146778028 146778289 -71258869 + MIR SINE MIR 6 262 0 2192 176 28 28 chr3 146778556 146778981 -71258177 + MLT2C2 LTR ERVL 1 425 -39 181 95 24 24 chr3 146778981 146779023 -71258135 + (TA)n Simple_repeat Simple_repeat 1 42 0 210 37 0 0 chr3 146779092 146779119 -71258039 + (TG)n Simple_repeat Simple_repeat 2 28 0 253 111 0 0 chr3 146779121 146779157 -71258001 + MLT2C2 LTR ERVL 427 462 -2 316 290 0 0 chr3 146780222 146780322 -71256836 - MER103 DNA DNA -57 109 10 185 35 69 0 chr3 146780610 146780639 -71256519 + C-rich Low_complexity Low_complexity 141 171 0 1341 196 9 0 chr3 146781257 146781477 -71255681 + MER58A DNA MER1_type 1 222 -2 369 0 0 0 chr3 146781536 146781577 -71255581 + (CA)n Simple_repeat Simple_repeat 1 41 0 442 272 68 19 chr3 146782350 146782512 -71254646 - MIR SINE MIR -1 261 92 1323 197 34 44 chr3 146784824 146785119 -71252039 - AluJo SINE Alu -17 295 4 766 53 23 15 chr3 146785327 146785458 -71251700 + (TAGA)n Simple_repeat Simple_repeat 3 134 0 192 213 16 49 chr3 146785676 146785737 -71251421 - MIR SINE MIR -11 251 193 646 218 9 0 chr3 146786223 146786333 -71250825 + MER81 DNA DNA 4 114 0 217 266 16 31 chr3 146786340 146786404 -71250754 - MIR SINE MIR -180 82 20 811 187 0 8 chr3 146786573 146786707 -71250451 - MER94 DNA DNA 0 134 2 213 274 0 0 chr3 146787186 146787237 -71249921 + CT-rich Low_complexity Low_complexity 3 53 0 256 254 0 30 chr3 146787457 146787524 -71249634 + MIR SINE MIR 190 254 -8 255 310 0 0 chr3 146787714 146787772 -71249386 + polypyrimidine Low_complexity Low_complexity 3 60 0 438 79 0 0 chr3 146787773 146787836 -71249322 + (CA)n Simple_repeat Simple_repeat 1 63 0 181 266 197 59 chr3 146788068 146788271 -71248887 - L2 LINE L2 -147 3125 2895 21 57 0 0 chr3 146788973 146789008 -71248150 + AT_rich Low_complexity Low_complexity 1 35 0 216 0 0 0 chr3 146789294 146789318 -71247840 + (TTG)n Simple_repeat Simple_repeat 1 24 0 497 157 0 0 chr3 146789327 146789397 -71247761 - AluSg/x SINE Alu -39 270 201 5228 89 35 13 chr3 146789540 146790337 -71246821 - L1PA13 LINE L1 -135 6028 5215 13395 195 35 7 chr3 146790338 146792676 -71244482 - L1PA13 LINE L1 -2219 4578 2309 542 150 0 0 chr3 146792676 146792756 -71244402 - MADE1 DNA Mariner 0 80 1 13395 195 35 7 chr3 146792756 146794847 -71242311 - L1PA13 LINE L1 -4488 2309 2 288 0 0 0 chr3 146795803 146795835 -71241323 + (TG)n Simple_repeat Simple_repeat 2 33 0 840 200 0 0 chr3 146796042 146796187 -71240971 + AluJb SINE Alu 141 285 -27 369 0 0 0 chr3 146796192 146796233 -71240925 + (TA)n Simple_repeat Simple_repeat 1 41 0 332 200 27 13 chr3 146797253 146797328 -71239830 - MLT1K LTR MaLR -2 586 511 2405 240 42 23 chr3 146797345 146797921 -71239237 - MLT1G LTR MaLR -3 587 1 470 285 53 93 chr3 146798828 146799566 -71237592 + L1MEc LINE L1 1141 1920 -4687 489 158 42 0 chr3 146799588 146799683 -71237475 + L1M1 LINE L1 35 133 -7432 * 16060 151 23 28 chr3 146799681 146802345 -71234813 + L1M1 LINE L1 1100 3749 -3816 1787 188 0 0 chr3 146802345 146802633 -71234525 + AluJb SINE Alu 1 288 -24 16060 151 23 28 chr3 146802633 146803569 -71233589 + L1M1 LINE L1 3749 4688 -2877 43659 30 25 1 chr3 146803571 146809576 -71227582 + L1PA2 LINE L1 1 6154 -1 207 0 0 0 chr3 146809580 146809603 -71227555 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 10576 180 32 3 chr3 146809605 146811714 -71225444 + L1M1 LINE L1 4668 6842 -743 1255 264 48 89 chr3 146811837 146812321 -71224837 - LTR16B LTR ERVL 0 464 1 585 366 38 27 chr3 146812440 146813073 -71224085 - HERVL LTR ERVL -310 5344 4705 23 0 0 0 chr3 146813580 146813603 -71223555 + AT_rich Low_complexity Low_complexity 1 23 0 4374 35 2 2 chr3 146813603 146814094 -71223064 - L1PA3 LINE L1 -5 6150 5660 1789 253 78 9 chr3 146814209 146814660 -71222498 - MLT1H1 LTR MaLR -15 540 59 422 269 59 25 chr3 146815350 146815469 -71221689 - L2 LINE L2 -1 3312 3190 665 125 0 0 chr3 146815917 146816030 -71221128 - AluSg/x SINE Alu 0 313 201 655 135 99 21 chr3 146816233 146816374 -71220784 + MER53 DNA DNA 6 157 -32 2619 156 45 19 chr3 146816389 146816875 -71220283 - L1MA8 LINE L1 -12 6279 5781 192 231 0 0 chr3 146816893 146816945 -71220213 + (TA)n Simple_repeat Simple_repeat 1 52 0 1814 147 50 0 chr3 146816974 146817273 -71219885 - L1MA8 LINE L1 -504 5787 5474 259 159 0 0 chr3 146817277 146817321 -71219837 + MER53 DNA DNA 146 189 0 319 312 61 6 chr3 146817353 146817505 -71219653 - MIR SINE MIR -64 144 23 1299 180 142 44 chr3 146818677 146819018 -71218140 - MSTD LTR MaLR 0 457 3 528 207 83 0 chr3 146819278 146819399 -71217759 + MER20B DNA MER1_type 55 185 -598 278 167 111 0 chr3 146819730 146819784 -71217374 - HAL1 LINE L1 -855 1652 1593 675 304 46 33 chr3 146819808 146820114 -71217044 - LTR16C LTR ERVL -15 476 167 643 267 61 47 chr3 146820233 146820577 -71216581 - HAL1 LINE L1 -914 1593 1245 2845 124 19 43 chr3 146820621 146821236 -71215922 + MER4E LTR ERV1 1 779 0 11298 27 3 0 chr3 146821329 146823348 -71213810 - L1PA4 LINE L1 -3 6152 4128 434 296 25 19 chr3 146824305 146824467 -71212691 - MIR SINE MIR -66 196 34 212 306 47 35 chr3 146824537 146824622 -71212536 + L2 LINE L2 3141 3226 -46 199 333 0 0 chr3 146824683 146824731 -71212427 - MIR SINE MIR -194 68 21 256 274 0 14 chr3 146824861 146824934 -71212224 + HAL1 LINE L1 2430 2501 -6 358 273 168 0 chr3 146825090 146825233 -71211925 + MIR3 SINE MIR 36 202 -6 10514 139 13 18 chr3 146826609 146828081 -71209077 + L1MA3 LINE L1 3449 4900 -1405 4928 121 3 3 chr3 146828081 146828784 -71208374 + L1PA13 LINE L1 5456 6158 -5 10514 139 13 18 chr3 146828784 146830162 -71206996 + L1MA3 LINE L1 4900 6284 -21 356 313 210 22 chr3 146831034 146831401 -71205757 - L2 LINE L2 -1 3271 2836 2498 47 0 10 chr3 146832031 146832328 -71204830 + AluY SINE Alu 1 294 -17 625 255 98 0 chr3 146832570 146832754 -71204404 + L2 LINE L2 3112 3313 0 270 298 26 40 chr3 146833520 146833702 -71203456 + L3 LINE CR1 644 824 -753 231 315 27 0 chr3 146834680 146834753 -71202405 - MIR3 SINE MIR -7 201 127 964 282 100 57 chr3 146835325 146835875 -71201283 - L2 LINE L2 -1 3312 2749 2225 83 3 17 chr3 146836016 146836317 -71200841 - AluSc SINE Alu -11 298 2 2279 168 89 42 chr3 146838194 146838652 -71198506 + MLT2B1 LTR ERVL 1 480 -40 234 0 0 0 chr3 146838652 146838678 -71198480 + (CA)n Simple_repeat Simple_repeat 2 27 0 329 111 56 0 chr3 146838723 146838777 -71198381 + MLT2B1 LTR ERVL 464 520 0 354 283 35 9 chr3 146839044 146839157 -71198001 + MIR SINE MIR 35 150 -58 303 313 130 0 chr3 146839508 146839623 -71197535 + MIR SINE MIR 133 262 0 391 284 124 24 chr3 146840177 146840521 -71196637 - MLT1I LTR MaLR -4 405 26 4341 126 34 27 chr3 146842746 146843492 -71193666 - Tigger3(Golem) DNA MER2_type -1 3028 2278 718 143 29 0 chr3 146843483 146843588 -71193570 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 2299 88 7 0 chr3 146843603 146843887 -71193271 + AluSc SINE Alu 1 286 -23 32 26 0 0 chr3 146843887 146843926 -71193232 + AT_rich Low_complexity Low_complexity 1 39 0 234 189 0 38 chr3 146844089 146844142 -71193016 - L2 LINE L2 -1 3271 3221 1960 123 3 7 chr3 146844230 146844522 -71192636 + AluJb SINE Alu 1 291 -21 1834 93 47 40 chr3 146844556 146844857 -71192301 + AluSg SINE Alu 8 310 0 491 308 84 28 chr3 146845039 146845396 -71191762 - L1MC4a LINE L1 -1858 5950 5574 214 213 21 0 chr3 146845464 146845511 -71191647 + L2 LINE L2 3266 3313 0 195 42 0 0 chr3 146846797 146846821 -71190337 + (CA)n Simple_repeat Simple_repeat 1 24 0 500 250 5 120 chr3 146847084 146847214 -71189944 + MER5B DNA MER1_type 1 102 -76 1224 186 95 67 chr3 146847214 146847499 -71189659 - AluJo SINE Alu -9 293 1 500 250 5 120 chr3 146847499 146847568 -71189590 + MER5B DNA MER1_type 102 177 -1 933 189 50 0 chr3 146847577 146847757 -71189401 + MER5A DNA MER1_type 1 189 0 196 316 143 10 chr3 146847885 146847983 -71189175 - L2 LINE L2 0 3272 3162 640 251 24 53 chr3 146848032 146848239 -71188919 - MIR SINE MIR -11 251 51 867 276 68 63 chr3 146848931 146849405 -71187753 + MLT1K LTR MaLR 1 476 0 2775 87 62 0 chr3 146849762 146850152 -71187006 + L1MA4A LINE L1 5888 6301 -2 903 114 0 0 chr3 146851073 146851204 -71185954 + L1MA3 LINE L1 6175 6305 0 636 230 225 5 chr3 146851243 146851452 -71185706 + MIR SINE MIR 5 259 -3 23 54 0 0 chr3 146851520 146851557 -71185601 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chr3 146851654 146851687 -71185471 + AT_rich Low_complexity Low_complexity 1 33 0 384 165 15 98 chr3 146851821 146851954 -71185204 + L1ME3A LINE L1 5961 6082 -88 287 313 12 0 chr3 146852363 146852443 -71184715 - L2 LINE L2 -5 3267 3187 1944 173 15 38 chr3 146852601 146852932 -71184226 - MLT2C1 LTR ERVL -13 384 62 1873 131 53 53 chr3 146852932 146853269 -71183889 + MER1B DNA MER1_type 1 337 0 1944 173 15 38 chr3 146853269 146853330 -71183828 - MLT2C1 LTR ERVL -335 62 1 468 0 0 0 chr3 146853400 146853452 -71183706 + (TG)n Simple_repeat Simple_repeat 2 53 0 297 0 0 0 chr3 146853623 146853656 -71183502 + (TG)n Simple_repeat Simple_repeat 2 34 0 256 219 14 55 chr3 146853821 146853894 -71183264 + MER5A DNA MER1_type 36 105 -84 2916 3 0 0 chr3 146854399 146854710 -71182448 - AluYa5 SINE Alu 0 311 1 398 283 96 64 chr3 146857095 146857452 -71179706 - L1ME3A LINE L1 -230 5940 5580 7263 183 20 3 chr3 146857452 146859637 -71177521 + L1PA15 LINE L1 4001 6165 0 398 283 96 64 chr3 146859637 146859704 -71177454 - L1ME3A LINE L1 -590 5580 5517 * 681 314 61 51 chr3 146859697 146860436 -71176722 - L1MEd LINE L1 -5354 765 20 215 302 9 60 chr3 146861077 146861193 -71175965 + L2 LINE L2 3196 3305 -8 483 292 81 39 chr3 146861727 146862059 -71175099 + L1ME4a LINE L1 5705 6050 -71 195 235 0 0 chr3 146862163 146862214 -71174944 + CT-rich Low_complexity Low_complexity 2 52 0 1115 196 31 5 chr3 146863102 146863326 -71173832 + THE1-int LTR MaLR 130 359 -1221 261 0 0 0 chr3 146863569 146863598 -71173560 + (TTG)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr3 146864207 146864228 -71172930 + AT_rich Low_complexity Low_complexity 1 21 0 258 221 115 35 chr3 146864287 146864400 -71172758 - MER113 DNA MER1_type? -398 123 2 1996 144 3 10 chr3 146865709 146866015 -71171143 - AluJo SINE Alu -8 304 1 233 209 0 0 chr3 146866073 146866116 -71171042 + CT-rich Low_complexity Low_complexity 3 45 0 533 293 78 39 chr3 146866319 146866756 -71170402 - L1MC4a LINE L1 -1949 5859 5406 232 273 74 0 chr3 146867639 146867732 -71169426 - MIR SINE MIR -54 154 47 423 0 0 0 chr3 146868382 146868429 -71168729 + (TC)n Simple_repeat Simple_repeat 2 48 0 434 220 47 51 chr3 146868572 146868767 -71168391 + MER20B DNA MER1_type 1 783 0 197 349 72 0 chr3 146869526 146869609 -71167549 + L2 LINE L2 3139 3227 -45 2476 120 19 32 chr3 146869863 146870239 -71166919 - MER83C LTR ERV1 0 373 3 875 190 108 0 chr3 146870263 146870421 -71166737 - MER45A DNA AcHobo -2 176 2 698 229 120 47 chr3 146870970 146871162 -71165996 + MER63A DNA MER1_type 3 208 -2 398 277 107 0 chr3 146871163 146871322 -71165836 - Charlie8 DNA MER1_type -2186 231 56 25 0 0 0 chr3 146872105 146872130 -71165028 + AT_rich Low_complexity Low_complexity 1 25 0 243 88 0 0 chr3 146872683 146872717 -71164441 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 224 304 89 121 chr3 146872719 146872976 -71164182 - L2 LINE L2 -19 3253 3005 1472 228 59 34 chr3 146872988 146873427 -71163731 + LTR16C LTR ERVL 9 458 -33 2419 219 3 53 chr3 146873819 146874384 -71162774 + MLT1F LTR MaLR 6 542 0 717 180 0 16 chr3 146874838 146874966 -71162192 - MLT1F LTR MaLR -1 541 416 299 277 52 0 chr3 146874968 146875060 -71162098 + L1ME4a LINE L1 5681 5771 -350 358 189 151 0 chr3 146875067 146875173 -71161985 + L1ME4a LINE L1 5814 5935 -186 417 211 138 9 chr3 146875229 146875453 -71161705 - MLT1G1 LTR MaLR -3 589 302 360 111 0 0 chr3 146875463 146875517 -71161641 + (TTCTCC)n Simple_repeat Simple_repeat 2 55 0 564 181 11 11 chr3 146875601 146875695 -71161463 - MLT2C1 LTR ERVL -70 327 234 2104 175 3 13 chr3 146875699 146876082 -71161076 - L1MA6 LINE L1 -5 6295 5917 1152 85 0 12 chr3 146876082 146876247 -71160911 + L1MA6 LINE L1 5763 5925 -375 1671 185 36 0 chr3 146876247 146876550 -71160608 - MLT2C2 LTR ERVL -150 314 1 2348 273 124 34 chr3 146876764 146877972 -71159186 - HAL1b LINE L1 -30 1318 2 559 283 59 9 chr3 146878608 146878827 -71158331 + L1ME LINE L1 5522 5751 -370 541 250 16 0 chr3 146879006 146879130 -71158028 + L2 LINE L2 3188 3313 0 3537 215 63 8 chr3 146879358 146880822 -71156336 - L1MB8 LINE L1 -9 6351 4814 237 208 78 13 chr3 146881036 146881113 -71156045 - L1ME LINE L1 -5941 129 48 6404 137 15 13 chr3 146881182 146881664 -71155494 - L1MA6 LINE L1 0 6300 5821 2128 141 104 47 chr3 146881664 146882069 -71155089 + MSTA LTR MaLR 1 428 0 6404 137 15 13 chr3 146882069 146883486 -71153672 - L1MA6 LINE L1 -479 5821 4398 * 17487 190 16 6 chr3 146883481 146886024 -71151134 - L1PA15 LINE L1 -7 7596 4986 4745 119 15 10 chr3 146886024 146886710 -71150448 - LTR8 LTR ERV1 -2 689 1 17487 190 16 6 chr3 146886710 146888692 -71148466 - L1PA15 LINE L1 -2617 4986 3026 243 206 32 16 chr3 146888998 146889061 -71148097 - MER58 DNA MER1_type 0 2420 2357 * 369 113 0 97 chr3 146889056 146889118 -71148040 - Charlie3 DNA MER1_type -5 2705 2650 529 323 36 12 chr3 146890231 146890479 -71146679 - L1PA15 LINE L1 -7327 254 1 10257 217 38 18 chr3 146890482 146893533 -71143625 - L1MB8 LINE L1 -1743 4585 1443 1861 199 61 27 chr3 146893533 146893945 -71143213 + MSTB LTR MaLR 1 426 0 10257 217 38 18 chr3 146893945 146894851 -71142307 - L1MB8 LINE L1 -4885 1443 556 1086 313 12 35 chr3 146895199 146895627 -71141531 - L1MB8 LINE L1 -5527 722 305 203 240 0 20 chr3 146895718 146895768 -71141390 + GA-rich Low_complexity Low_complexity 3 51 0 28 0 0 0 chr3 146895828 146895856 -71141302 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr3 146896011 146896038 -71141120 + AT_rich Low_complexity Low_complexity 1 27 0 566 271 40 5 chr3 146896089 146896288 -71140870 - L1MC4a LINE L1 -1857 5951 5746 402 313 7 13 chr3 146898762 146898912 -71138246 + MIR3 SINE MIR 37 185 -23 585 180 90 0 chr3 146899134 146899256 -71137902 + MER5A DNA MER1_type 1 133 -56 195 245 75 82 chr3 146899274 146899433 -71137725 + L2 LINE L2 2812 2969 -303 1875 213 106 45 chr3 146899625 146899728 -71137430 + MLT1E2 LTR MaLR 3 98 -528 2466 192 210 90 chr3 146899728 146900639 -71136519 + LTR28 LTR ERV1 1 1020 0 1875 213 106 45 chr3 146900639 146901177 -71135981 + MLT1E2 LTR MaLR 98 626 0 2145 98 7 3 chr3 146901244 146901530 -71135628 + AluSq SINE Alu 1 287 -26 189 0 0 0 chr3 146901533 146901554 -71135604 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 587 106 0 11 chr3 146901631 146901725 -71135433 + (TGGA)n Simple_repeat Simple_repeat 1 93 0 3601 63 2 0 chr3 146901881 146902322 -71134836 + MLT2A1 LTR ERVL 3 444 0 510 141 0 0 chr3 146903312 146903390 -71133768 + LTR67 LTR ERVL 480 557 0 1113 293 88 32 chr3 146903477 146904002 -71133156 - LTR67 LTR ERVL 0 557 4 552 216 0 0 chr3 146904685 146904801 -71132357 + MIR SINE MIR 76 191 -71 22 56 0 0 chr3 146904947 146904983 -71132175 + AT_rich Low_complexity Low_complexity 1 36 0 2315 68 7 10 chr3 146905760 146906052 -71131106 + AluY SINE Alu 1 291 -20 2293 72 6 53 chr3 146907667 146907986 -71129172 - AluY SINE Alu -7 304 1 25 75 0 0 chr3 146908341 146908394 -71128764 + AT_rich Low_complexity Low_complexity 1 53 0 203 268 42 0 chr3 146908784 146908855 -71128303 - MIR SINE MIR -70 192 119 324 218 58 0 chr3 146909593 146909680 -71127478 + L2 LINE L2 3172 3263 -9 4978 54 2 0 chr3 146960701 146961356 -71075802 - L1PA6 LINE L1 -287 5867 5212 317 114 0 0 chr3 146961362 146961406 -71075752 - MER53 DNA DNA -144 45 2 2264 110 3 0 chr3 146962307 146962607 -71074551 - AluSp SINE Alu -12 301 1 420 383 27 16 chr3 146963722 146963978 -71073180 - L3 LINE CR1 -1073 504 246 193 333 149 7 chr3 146964480 146964621 -71072537 + MIR3 SINE MIR 20 180 -28 6861 186 12 6 chr3 146964864 146967022 -71070136 + L1PA15 LINE L1 3980 6165 0 547 286 88 0 chr3 146967070 146967287 -71069871 - MIR SINE MIR -24 238 3 225 250 17 0 chr3 146967302 146967362 -71069796 + MER103 DNA DNA 25 85 -81 1180 287 111 23 chr3 146968539 146968971 -71068187 + MLT1K LTR MaLR 5 474 -114 235 153 10 41 chr3 146969205 146969303 -71067855 + (CA)n Simple_repeat Simple_repeat 2 96 0 418 323 54 39 chr3 146970538 146970817 -71066341 - L2 LINE L2 -5 3267 2985 1055 181 11 5 chr3 146971391 146971579 -71065579 + MER5A DNA MER1_type 1 189 0 415 209 146 76 chr3 146971586 146971744 -71065414 + MER5B DNA MER1_type 10 178 0 235 242 113 0 chr3 146971828 146971890 -71065268 - MER5A DNA MER1_type -112 77 9 868 287 113 25 chr3 146972812 146973209 -71063949 - L3 LINE CR1 -469 1108 677 214 250 167 24 chr3 146973235 146973319 -71063839 + MIR SINE MIR 30 125 -83 489 225 39 8 chr3 146973363 146973492 -71063666 + MIR SINE MIR 27 159 -103 210 211 70 9 chr3 146973509 146973623 -71063535 + (TA)n Simple_repeat Simple_repeat 1 121 0 417 236 36 9 chr3 146973629 146973739 -71063419 + MIR SINE MIR 146 258 -4 299 250 26 13 chr3 146973842 146973918 -71063240 - MER94 DNA DNA 0 134 58 233 313 73 67 chr3 146974508 146974687 -71062471 - L3 LINE CR1 -1158 419 240 2254 122 0 0 chr3 146975753 146976048 -71061110 + AluSx SINE Alu 1 295 -17 274 167 0 67 chr3 146976283 146976343 -71060815 - L2 LINE L2 -1 3312 3257 295 293 88 14 chr3 146977166 146977313 -71059845 + MIR SINE MIR 32 189 -73 809 265 135 4 chr3 146978685 146978915 -71058243 + MIR SINE MIR 3 262 0 914 36 0 0 chr3 146979273 146979383 -71057775 - L1PA5 LINE L1 0 6154 6045 2312 135 15 25 chr3 146979492 146979841 -71057317 + L1MB1 LINE L1 5779 6125 -43 2122 125 0 7 chr3 146979841 146980144 -71057014 + AluSp SINE Alu 1 301 -12 2312 135 15 25 chr3 146980144 146980187 -71056971 + L1MB1 LINE L1 6125 6167 -1 3492 117 38 21 chr3 146980752 146980860 -71056298 + L1MC1 LINE L1 5737 5842 -491 1915 159 3 0 chr3 146980860 146981149 -71056009 + AluJb SINE Alu 17 306 -6 3492 117 38 21 chr3 146981149 146981622 -71055536 + L1MC1 LINE L1 5842 6328 -5 2540 62 0 0 chr3 146981971 146982275 -71054883 + AluY SINE Alu 1 304 -7 240 284 12 12 chr3 146982378 146982459 -71054699 - MIR SINE MIR -60 148 68 25 0 0 0 chr3 146983719 146983744 -71053414 + AT_rich Low_complexity Low_complexity 1 25 0 302 233 81 0 chr3 146984482 146984568 -71052590 + MIR SINE MIR 30 122 -86 191 86 0 29 chr3 146985105 146985140 -71052018 + (TA)n Simple_repeat Simple_repeat 1 34 0 6466 47 5 0 chr3 146985141 146985914 -71051244 - L1PA7 LINE L1 -18 6136 5360 658 248 0 13 chr3 146986662 146986819 -71050339 - MER3 DNA MER1_type -87 122 15 335 293 31 81 chr3 146987199 146987421 -71049737 - MIR SINE MIR 0 262 52 564 278 111 59 chr3 146989920 146990291 -71046867 - MLT1J2 LTR MaLR -50 400 11 946 305 63 39 chr3 146990639 146991127 -71046031 + L2 LINE L2 2814 3313 0 631 204 1 0 chr3 146991238 146991389 -71045769 + L1M4 LINE L1 4896 5047 -1099 1572 174 26 30 chr3 146991403 146991707 -71045451 + AluJb SINE Alu 3 305 -7 762 117 0 0 chr3 146991710 146991830 -71045328 + (GAAA)n Simple_repeat Simple_repeat 1 120 0 706 150 24 14 chr3 146991804 146992016 -71045142 + GA-rich Low_complexity Low_complexity 1 214 0 * 1367 190 36 33 chr3 146992017 146992348 -71044810 + L1M4 LINE L1 5040 5371 -775 917 177 39 11 chr3 146992484 146992665 -71044493 + MER5A DNA MER1_type 3 188 -1 1153 173 35 0 chr3 146994738 146994940 -71042218 + MER3 DNA MER1_type 1 209 0 218 290 49 77 chr3 146995036 146995219 -71041939 - L2 LINE L2 -223 3049 2872 226 185 25 49 chr3 146995874 146995955 -71041203 + CT-rich Low_complexity Low_complexity 5 83 0 540 244 17 0 chr3 146996165 146996280 -71040878 + MER5A DNA MER1_type 10 126 -63 2351 99 0 10 chr3 146996331 146996643 -71040515 + AluSq SINE Alu 1 309 -4 2280 114 0 0 chr3 146997231 146997529 -71039629 - AluSx SINE Alu -14 298 1 443 277 33 11 chr3 146998053 146998237 -71038921 - L1MEd LINE L1 -3180 3202 3015 381 251 246 0 chr3 146998310 146998513 -71038645 - L1MEd LINE L1 -3504 2878 2626 263 283 155 9 chr3 146998597 146998824 -71038334 - L1MEd LINE L1 -3868 2514 2260 511 278 101 55 chr3 146999144 146999306 -71037852 - L1MEd LINE L1 -861 1882 1729 2081 144 19 72 chr3 146999306 146999779 -71037379 - L1MB4 LINE L1 -1 6179 5732 511 278 101 55 chr3 146999779 147000084 -71037074 - L1MEd LINE L1 -1014 1729 1440 351 0 0 0 chr3 147000084 147000123 -71037035 + (TC)n Simple_repeat Simple_repeat 2 40 0 511 278 101 55 chr3 147000123 147000352 -71036806 - L1MEd LINE L1 -1303 1440 1119 194 328 49 0 chr3 147000390 147000451 -71036707 - L2 LINE L2 -4 3309 3246 206 62 31 0 chr3 147001114 147001146 -71036012 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 1122 236 16 0 chr3 147001640 147001894 -71035264 - MIR SINE MIR -3 259 2 2622 120 43 7 chr3 147002762 147003179 -71033979 - MSTB1 LTR MaLR 0 432 1 236 329 14 0 chr3 147003342 147003412 -71033746 - L2 LINE L2 -8 3305 3235 332 179 0 0 chr3 147003421 147003477 -71033681 + Tigger5 DNA MER2_type 1 56 -2267 268 229 43 0 chr3 147003445 147003515 -71033643 + Tigger5 DNA MER2_type 2251 2323 0 * 208 308 13 64 chr3 147003926 147004004 -71033154 - L2 LINE L2 -1 3271 3198 916 275 97 30 chr3 147004472 147004865 -71032293 + L1ME4a LINE L1 5566 5984 -137 272 329 51 15 chr3 147005616 147005753 -71031405 + MIR3 SINE MIR 58 199 -9 367 281 74 8 chr3 147006404 147006525 -71030633 + MIR SINE MIR 78 206 -56 226 329 35 15 chr3 147006565 147006695 -71030463 - MER5B DNA MER1_type -23 166 26 1634 254 48 40 chr3 147007689 147008209 -71028949 + MLT1H1 LTR MaLR 30 553 -2 1018 255 124 38 chr3 147008289 147008845 -71028313 + L1ME4a LINE L1 5516 6119 -2 941 159 116 11 chr3 147009277 147009466 -71027692 - MER3 DNA MER1_type 0 209 1 488 321 31 8 chr3 147009516 147009746 -71027412 + MIR SINE MIR 14 249 -13 186 214 18 18 chr3 147011682 147011738 -71025420 - L2 LINE L2 -4 3268 3213 * 193 318 206 0 chr3 147011727 147011853 -71025305 + L2 LINE L2 3121 3272 0 217 256 73 0 chr3 147012216 147012298 -71024860 - L2 LINE L2 -49 3223 3136 3165 162 18 11 chr3 147012892 147013464 -71023694 - MER84 LTR ERVI 0 507 1 288 340 97 21 chr3 147015102 147015246 -71021912 - MIR SINE MIR -85 177 23 258 207 69 0 chr3 147015653 147015711 -71021447 - MLT1J1 LTR MaLR 0 446 385 207 161 0 0 chr3 147016063 147016094 -71021064 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 232 178 22 0 chr3 147016290 147016335 -71020823 + L2 LINE L2 3268 3313 0 1001 222 0 35 chr3 147017795 147018025 -71019133 - MIR SINE MIR 0 262 41 287 222 59 105 chr3 147018179 147018332 -71018826 - MIR SINE MIR -41 221 76 426 271 56 21 chr3 147018561 147018705 -71018453 - MIR SINE MIR -70 192 44 198 0 0 0 chr3 147019651 147019673 -71017485 + (CAG)n Simple_repeat Simple_repeat 1 22 0 524 281 54 65 chr3 147020096 147020374 -71016784 - L2 LINE L2 -21 3251 2977 717 162 119 4 chr3 147020470 147020625 -71016533 - MER5A DNA MER1_type -6 176 23 657 192 44 33 chr3 147020627 147020875 -71016283 - LTR1B LTR ERV1 -3 823 443 526 295 113 46 chr3 147020891 147021349 -71015809 - L2 LINE L2 -601 2713 2225 587 274 71 10 chr3 147021503 147021779 -71015379 - LTR16A LTR ERVL 0 464 145 259 267 93 0 chr3 147022083 147022169 -71014989 - L2 LINE L2 -1489 1825 1732 314 263 206 38 chr3 147024197 147024357 -71012801 + MIR SINE MIR 61 247 -15 1873 137 0 11 chr3 147025184 147025455 -71011703 + AluSx SINE Alu 1 268 -44 858 102 0 0 chr3 147025456 147025583 -71011575 + (GAAA)n Simple_repeat Simple_repeat 3 129 0 1814 244 71 17 chr3 147025652 147026185 -71010973 - MLT1L LTR MaLR -8 607 46 22768 151 34 10 chr3 147026239 147031789 -71005369 + L1M1 LINE L1 17 5704 -1861 2149 125 0 25 chr3 147031789 147032109 -71005049 + AluSx SINE Alu 1 312 0 1482 140 4 4 chr3 147032626 147032854 -71004304 - AluJb SINE Alu 0 312 85 1516 113 13 123 chr3 147033464 147033764 -71003394 + AluSx SINE Alu 1 267 -45 2193 103 3 7 chr3 147035705 147035997 -71001161 - AluSg SINE Alu -19 291 1 364 118 0 129 chr3 147036375 147036405 -71000753 + MER53 DNA DNA 5 37 -152 2233 102 3 37 chr3 147036405 147036539 -71000619 + AluSx SINE Alu 1 138 -174 2501 84 0 0 chr3 147036539 147036850 -71000308 + AluY SINE Alu 1 311 0 2233 102 3 37 chr3 147036850 147037037 -71000121 + AluSx SINE Alu 138 311 -1 364 118 0 129 chr3 147037037 147037091 -71000067 + MER53 DNA DNA 37 78 -111 934 145 66 0 chr3 147037337 147037489 -70999669 + L1MB3 LINE L1 6015 6176 -7 454 298 82 0 chr3 147037779 147037950 -70999208 - MLT1L LTR MaLR -346 269 85 205 179 0 0 chr3 147039046 147039085 -70998073 - L2 LINE L2 -2 3270 3232 328 297 174 43 chr3 147040598 147040736 -70996422 + MIR SINE MIR 2 157 -105 215 129 0 0 chr3 147041028 147041059 -70996099 - L2 LINE L2 -92 3221 3191 1650 257 88 46 chr3 147041655 147042243 -70994915 + MLT1L LTR MaLR 3 615 0 247 310 64 21 chr3 147042415 147042602 -70994556 - L1M4 LINE L1 -1564 4582 4388 434 170 11 32 chr3 147043632 147043726 -70993432 - MER96 DNA MER1_type? 0 175 84 311 183 0 0 chr3 147043701 147043761 -70993397 + MER96 DNA MER1_type? 116 175 0 * 1303 248 86 67 chr3 147044362 147045155 -70992003 + L2 LINE L2 2503 3313 0 1556 248 51 7 chr3 147045263 147045691 -70991467 - L2 LINE L2 -805 2509 2063 1059 254 101 30 chr3 147045693 147046157 -70991001 - L2 LINE L2 -1558 1756 1260 209 286 177 54 chr3 147046310 147046513 -70990645 - MIR SINE MIR -19 243 16 283 170 74 12 chr3 147047073 147047290 -70989868 + AluJo SINE Alu 1 298 -4 978 192 71 0 chr3 147047500 147047540 -70989618 + MER3 DNA MER1_type 8 60 -149 313 211 108 72 chr3 147047540 147047706 -70989452 - MER3 DNA MER1_type 0 209 38 2418 193 73 43 chr3 147047849 147048449 -70988709 - MLT1E2 LTR MaLR -8 618 1 180 0 0 0 chr3 147048551 147048571 -70988587 + (T)n Simple_repeat Simple_repeat 1 20 0 1871 153 7 10 chr3 147048574 147048862 -70988296 + AluJb SINE Alu 10 296 -16 826 142 0 0 chr3 147052193 147052306 -70984852 - AluJb SINE Alu -23 289 177 27 0 0 0 chr3 147052693 147052720 -70984438 + AT_rich Low_complexity Low_complexity 1 27 0 4478 150 25 45 chr3 147053431 147054350 -70982808 + L1MA3 LINE L1 4270 5170 -976 1135 75 0 0 chr3 147054351 147054484 -70982674 + AluSg SINE Alu 1 133 -177 770 44 0 0 chr3 147054492 147054582 -70982576 + L1PA3 LINE L1 9 98 -6048 * 40064 35 1 2 chr3 147054576 147060118 -70977040 + L1PA3 LINE L1 617 6155 0 1398 85 11 5 chr3 147060126 147060314 -70976844 + AluSg SINE Alu 123 311 -1 6608 99 12 14 chr3 147060327 147061300 -70975858 + L1MA3 LINE L1 5335 6305 0 2246 117 0 3 chr3 147062847 147063145 -70974013 - AluSx SINE Alu -15 297 1 263 146 164 0 chr3 147063292 147063347 -70973811 + MER117 DNA MER1_type 4 67 -130 1675 233 34 63 chr3 147063347 147063823 -70973335 - LTR40b LTR ERVL 0 462 1 1166 219 37 4 chr3 147063823 147064069 -70973089 - HERVL40 LTR ERVL 0 5530 5277 778 338 8 28 chr3 147064016 147064404 -70972754 - MER89-int LTR ERV1 -289 6512 6133 * 1378 303 8 18 chr3 147064625 147064746 -70972412 - HERVL40 LTR ERVL -3257 2273 2152 1822 165 48 70 chr3 147064746 147065044 -70972114 - MLT1B LTR MaLR 0 390 102 2321 104 3 0 chr3 147065044 147065353 -70971805 - AluSx SINE Alu -2 310 1 1822 165 48 70 chr3 147065353 147065453 -70971705 - MLT1B LTR MaLR -288 102 1 1378 303 8 18 chr3 147065453 147065711 -70971447 - HERVL40 LTR ERVL -3378 2152 1898 3245 272 8 37 chr3 147065716 147066279 -70970879 - HERVL40 LTR ERVL -4127 1403 872 1397 190 14 0 chr3 147066279 147066500 -70970658 + MER58A DNA MER1_type 1 224 0 3245 272 8 37 chr3 147066500 147066797 -70970361 - HERVL40 LTR ERVL -4658 872 568 1589 271 58 50 chr3 147066874 147067439 -70969719 - HERVL40 LTR ERVL -4960 570 1 1675 256 27 25 chr3 147067454 147067798 -70969360 - LTR40b LTR ERVL -15 447 100 3652 157 57 16 chr3 147067798 147068417 -70968741 - LTR48B LTR ERV1 0 644 1 1675 256 27 25 chr3 147068417 147068518 -70968640 - LTR40b LTR ERVL -362 100 1 324 284 73 28 chr3 147068527 147068636 -70968522 + MER117 DNA MER1_type 73 186 -11 501 298 53 50 chr3 147068657 147068996 -70968162 + L1M4 LINE L1 4253 4592 -1554 653 263 128 0 chr3 147070001 147070157 -70967001 - MER45A DNA AcHobo 0 178 3 738 240 131 64 chr3 147070562 147070875 -70966283 + MER102b DNA MER1_type 2 335 -6 388 316 170 0 chr3 147073242 147073413 -70963745 + MIR SINE MIR 57 256 -6 225 65 0 0 chr3 147073868 147073899 -70963259 + (GTTTG)n Simple_repeat Simple_repeat 3 33 0 282 205 228 16 chr3 147074203 147074330 -70962828 - MIR SINE MIR -19 243 90 2578 205 37 14 chr3 147074511 147075077 -70962081 - MLT1G LTR MaLR -2 588 10 2906 166 11 21 chr3 147075089 147075624 -70961534 + L1MA8 LINE L1 5759 6288 -3 593 211 102 0 chr3 147076808 147076936 -70960222 - L2 LINE L2 -676 2638 2498 1245 157 84 147 chr3 147076945 147077008 -70960150 + MLT1C LTR MaLR 8 73 -394 1999 115 3 36 chr3 147077008 147077312 -70959846 + AluSx SINE Alu 1 294 -18 1245 157 84 147 chr3 147077312 147077642 -70959516 + MLT1C LTR MaLR 73 376 -91 324 331 15 7 chr3 147077759 147077895 -70959263 + L2 LINE L2 3176 3312 -1 607 304 130 56 chr3 147078145 147078662 -70958496 - MLT1H1 LTR MaLR 0 555 1 476 276 115 0 chr3 147079874 147080030 -70957128 + MER5B DNA MER1_type 1 174 -4 1117 276 64 58 chr3 147080054 147081100 -70956058 - L1MEd LINE L1 -4199 1930 514 219 36 0 0 chr3 147081150 147081178 -70955980 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 652 266 72 46 chr3 147081181 147081485 -70955673 - L1MEd LINE L1 -5718 401 90 361 261 8 30 chr3 147081485 147081619 -70955539 + L1MA9 LINE L1 6162 6292 -20 341 162 0 14 chr3 147081896 147081970 -70955188 + GA-rich Low_complexity Low_complexity 4 76 0 197 274 59 39 chr3 147082681 147082783 -70954375 + L2 LINE L2 3116 3219 -94 361 269 39 77 chr3 147082935 147083091 -70954067 - MIR SINE MIR -46 216 67 358 273 13 0 chr3 147083268 147083345 -70953813 - MER91A DNA MER1_type -104 92 15 242 292 67 11 chr3 147085870 147085959 -70951199 - L2 LINE L2 -33 3280 3187 2143 148 5 16 chr3 147086308 147086681 -70950477 - L1PB1 LINE L1 -1 6150 5782 424 108 72 0 chr3 147086685 147086768 -70950390 - L1PB1 LINE L1 -823 5323 5235 * 3699 186 3 68 chr3 147086765 147087369 -70949789 + L1 LINE L1 4265 4774 -1372 3044 28 11 0 chr3 147087369 147087729 -70949429 - L1PA3 LINE L1 -1 6154 5791 3699 186 3 68 chr3 147087729 147088173 -70948985 + L1 LINE L1 4774 5245 -901 358 121 0 0 chr3 147088396 147088454 -70948704 - MADE1 DNA Mariner 0 80 23 2162 101 30 0 chr3 147089807 147090104 -70947054 - AluSg SINE Alu -4 306 1 186 43 0 0 chr3 147090124 147090147 -70947011 + (CA)n Simple_repeat Simple_repeat 2 24 0 1023 277 39 32 chr3 147090148 147090706 -70946452 - L1ME3 LINE L1 -287 5875 5377 213 39 0 0 chr3 147090747 147090773 -70946385 + (TG)n Simple_repeat Simple_repeat 2 27 0 543 280 209 23 chr3 147090775 147091670 -70945488 - L1ME3 LINE L1 -852 5294 4068 770 286 109 53 chr3 147091671 147092489 -70944669 + L2 LINE L2 2170 3048 -224 242 323 65 11 chr3 147092522 147092615 -70944543 + L2 LINE L2 3202 3299 -14 1141 165 16 11 chr3 147093913 147094101 -70943057 + MER5A DNA MER1_type 1 189 0 777 176 11 57 chr3 147094102 147094278 -70942880 - MER5B DNA MER1_type -6 172 5 529 152 65 0 chr3 147094374 147094466 -70942692 - MER5A DNA MER1_type -68 121 24 381 276 26 53 chr3 147094663 147094704 -70942454 + MIR SINE MIR 105 146 -116 2299 152 8 22 chr3 147094704 147095106 -70942052 + MSTD LTR MaLR 1 396 0 381 276 26 53 chr3 147095106 147095216 -70941942 + MIR SINE MIR 146 252 -10 2045 115 10 30 chr3 147095377 147095682 -70941476 + AluSq SINE Alu 1 299 -14 372 325 65 0 chr3 147096297 147096451 -70940707 + L2 LINE L2 3109 3272 0 569 213 30 24 chr3 147096656 147096825 -70940333 - Charlie1b DNA MER1_type 0 523 354 582 192 19 0 chr3 147096930 147097034 -70940124 + FRAM SINE Alu 52 157 -19 1533 184 67 6 chr3 147097035 147097377 -70939781 - Charlie1b DNA MER1_type -160 363 1 309 200 47 12 chr3 147097377 147097462 -70939696 - MLT1J LTR MaLR -6 505 418 526 249 175 37 chr3 147097529 147097708 -70939450 - MLT1J LTR MaLR -205 306 76 1442 219 30 14 chr3 147097708 147098005 -70939153 - AluJo SINE Alu -10 302 1 526 249 175 37 chr3 147098005 147098094 -70939064 - MLT1J LTR MaLR -435 76 1 388 318 23 68 chr3 147098411 147098676 -70938482 + L2 LINE L2 2764 3016 -297 26 0 0 0 chr3 147098680 147098706 -70938452 + AT_rich Low_complexity Low_complexity 1 26 0 2740 158 25 15 chr3 147098706 147099236 -70937922 - MER89 LTR ERV1 -24 535 1 498 342 57 57 chr3 147099247 147099475 -70937683 + L2 LINE L2 3024 3251 -21 1964 147 10 3 chr3 147099486 147099778 -70937380 + AluJb SINE Alu 1 294 -18 2112 130 13 48 chr3 147101189 147101566 -70935592 - THE1B LTR MaLR 0 364 1 333 252 72 27 chr3 147101571 147101682 -70935476 + MIR3 SINE MIR 65 180 -28 402 250 45 18 chr3 147102484 147102596 -70934562 - L2 LINE L2 -2 3311 3197 21 71 0 0 chr3 147103226 147103268 -70933890 + AT_rich Low_complexity Low_complexity 1 42 0 1571 228 47 43 chr3 147104724 147105190 -70931968 + L1M3 LINE L1 417 884 -5419 10338 224 39 36 chr3 147105225 147107700 -70929458 + L1M3 LINE L1 824 3291 -3091 1778 162 7 27 chr3 147107700 147107997 -70929161 + AluJb SINE Alu 1 291 -21 10338 224 39 36 chr3 147107997 147108938 -70928220 + L1M3 LINE L1 3291 4228 -2154 2449 126 38 24 chr3 147108938 147109360 -70927798 - MSTA LTR MaLR 0 428 1 10338 224 39 36 chr3 147109360 147109762 -70927396 + L1M3 LINE L1 4228 4627 -1755 2275 118 0 0 chr3 147109762 147110067 -70927091 + AluSx SINE Alu 1 305 -7 10338 224 39 36 chr3 147110067 147110591 -70926567 + L1M3 LINE L1 4627 5031 -1351 587 170 0 10 chr3 147110593 147110693 -70926465 - Tigger7 DNA MER2_type 0 2487 2389 * 1491 205 0 4 chr3 147110691 147110959 -70926199 - Tigger7 DNA MER2_type -466 267 1 2456 173 25 49 chr3 147110959 147111672 -70925486 + L1M3 LINE L1 5032 5725 -694 979 153 69 54 chr3 147111727 147111926 -70925232 + Charlie1b DNA MER1_type 61 266 -2495 2104 108 0 43 chr3 147111926 147112231 -70924927 + AluSg SINE Alu 1 292 -18 979 153 69 54 chr3 147112231 147112292 -70924866 + Charlie1b DNA MER1_type 266 325 -198 253 159 0 0 chr3 147112308 147112352 -70924806 + L1MB1 LINE L1 6071 6114 -54 1482 186 3 20 chr3 147112357 147112663 -70924495 + L1M3 LINE L1 5722 6022 -382 1297 170 59 0 chr3 147113949 147114220 -70922938 - MER96B DNA MER1_type? -14 403 117 267 253 77 0 chr3 147114219 147114310 -70922848 + HsTC2 DNA Tc2 1796 1893 -5 * 2224 120 0 3 chr3 147114542 147114850 -70922308 + AluSg SINE Alu 1 307 -3 241 209 0 66 chr3 147115208 147115299 -70921859 + L1MC5 LINE L1 7848 7932 -29 243 0 0 0 chr3 147115394 147115421 -70921737 + (TG)n Simple_repeat Simple_repeat 2 28 0 1086 217 11 18 chr3 147116500 147116777 -70920381 + Charlie4a DNA MER1_type 44 318 -190 3514 136 29 24 chr3 147116784 147117439 -70919719 + Tigger3b DNA MER2_type 1 658 -573 577 162 29 9 chr3 147117471 147117576 -70919582 - FLAM_A SINE Alu -34 108 2 1200 143 132 4 chr3 147117578 147117844 -70919314 + Tigger3b DNA MER2_type 650 949 -283 4342 130 24 26 chr3 147117870 147118062 -70919096 - L1MA5 LINE L1 -2 7319 7128 12048 22 1 0 chr3 147118062 147120240 -70916918 - L1PA3 LINE L1 0 6155 3976 1955 118 10 31 chr3 147120246 147120559 -70916599 - AluSx SINE Alu 0 307 1 4342 130 24 26 chr3 147120559 147121150 -70916008 - L1MA5 LINE L1 -198 7123 6530 9902 39 0 1 chr3 147121150 147122365 -70914793 + HERV17 LTR ERV1 3100 4313 -4313 15868 52 1 1 chr3 147122466 147124487 -70912671 + HERV17 LTR ERV1 3999 6019 -2607 261 77 0 0 chr3 147124480 147124519 -70912639 + HERV17 LTR ERV1 7510 7548 -1078 * 2240 68 0 0 chr3 147124509 147124801 -70912357 + HERV17 LTR ERV1 8335 8626 0 2594 52 0 3 chr3 147124801 147125128 -70912030 + LTR17 LTR ERV1 1 326 -454 14166 185 17 31 chr3 147125142 147125348 -70911810 - L1MA5 LINE L1 -743 6424 6217 2432 96 3 0 chr3 147125348 147125660 -70911498 - AluSp SINE Alu 0 313 1 14166 185 17 31 chr3 147125660 147127474 -70909684 - L1MA5 LINE L1 -950 6217 4379 198 0 0 0 chr3 147127474 147127496 -70909662 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 14166 185 17 31 chr3 147127496 147129396 -70907762 - L1MA5 LINE L1 -2788 4379 2454 1910 147 18 0 chr3 147129396 147129681 -70907477 - AluJo SINE Alu -22 290 1 14166 185 17 31 chr3 147129681 147131926 -70905232 - L1MA5 LINE L1 -4713 2454 484 670 122 0 0 chr3 147131929 147132027 -70905131 + AluSg/x SINE Alu 204 301 -8 1554 129 4 4 chr3 147132027 147132268 -70904890 + Tigger3b DNA MER2_type 991 1231 0 2633 39 0 7 chr3 147132289 147132594 -70904564 + AluY SINE Alu 1 303 -8 739 194 13 0 chr3 147132605 147132760 -70904398 + Charlie4 DNA MER1_type 1804 1960 -1 1991 144 0 17 chr3 147133209 147133500 -70903658 + AluSx SINE Alu 1 286 -26 289 77 19 0 chr3 147133661 147133713 -70903445 + L1M LINE L1 5279 5331 -2454 559 160 0 0 chr3 147133764 147133870 -70903288 + L1MD1 LINE L1 4753 4858 -1288 * 3367 129 187 99 chr3 147133867 147134391 -70902767 - L1MC3 LINE L1 0 7785 7309 248 253 13 0 chr3 147134391 147134470 -70902688 - MLT1F1 LTR MaLR -453 114 35 3367 129 187 99 chr3 147134470 147134877 -70902281 - L1MC3 LINE L1 -476 7309 6687 1006 204 30 22 chr3 147134880 147135093 -70902065 + L1MD1 LINE L1 4849 5059 -1183 2419 93 3 0 chr3 147135093 147135405 -70901753 + AluSp SINE Alu 1 313 0 1006 204 30 22 chr3 147135405 147136019 -70901139 + L1MD1 LINE L1 5059 5876 -366 534 255 5 69 chr3 147136023 147136227 -70900931 + L1ME1 LINE L1 5968 6158 -8 2144 106 3 23 chr3 147136588 147136891 -70900267 + AluSg SINE Alu 1 297 -13 21 0 0 0 chr3 147137798 147137819 -70899339 + AT_rich Low_complexity Low_complexity 1 21 0 686 36 0 0 chr3 147138040 147138123 -70899035 + L1PA5 LINE L1 6061 6143 -11 35 24 0 0 chr3 147138123 147138165 -70898993 + AT_rich Low_complexity Low_complexity 1 42 0 2236 189 38 29 chr3 147138187 147138737 -70898421 + L1MB8 LINE L1 5615 6169 -9 380 191 12 0 chr3 147138738 147138822 -70898336 + GA-rich Low_complexity Low_complexity 4 88 0 524 248 51 19 chr3 147138945 147139102 -70898056 - LTR67 LTR ERVL -367 190 29 469 347 51 16 chr3 147139151 147139462 -70897696 - L2 LINE L2 -635 2679 2358 1217 231 22 0 chr3 147139487 147139799 -70897359 - L1MEc LINE L1 -3319 2896 2578 1516 111 0 5 chr3 147139809 147140016 -70897142 - AluSq SINE Alu -13 300 95 13989 165 23 47 chr3 147140037 147141490 -70895668 - L1M1 LINE L1 -602 5880 4393 834 89 32 0 chr3 147141490 147141614 -70895544 - L1MA3 LINE L1 0 6305 6178 13989 165 23 47 chr3 147141614 147142533 -70894625 - L1M1 LINE L1 -2089 4393 3453 1852 114 0 24 chr3 147142533 147142823 -70894335 - L1PA11 LINE L1 0 6174 5892 13989 165 23 47 chr3 147142823 147143170 -70893988 - L1M1 LINE L1 -3029 3453 3099 4669 169 27 57 chr3 147143170 147144274 -70892884 - MER11C LTR ERVK 0 1071 1 13989 165 23 47 chr3 147144274 147145359 -70891799 - L1M1 LINE L1 -3383 3099 2168 5864 186 51 33 chr3 147145901 147147101 -70890057 - L1M1 LINE L1 -4065 1263 877 1904 166 0 22 chr3 147147101 147147420 -70889738 - AluJo SINE Alu 0 312 1 5864 186 51 33 chr3 147147420 147148313 -70888845 - L1M1 LINE L1 -4451 877 1 229 159 0 0 chr3 147148315 147148359 -70888799 - L1MEc LINE L1 -4136 2260 2217 1073 246 94 18 chr3 147148383 147148766 -70888392 - L1MEc LINE L1 -5033 1363 933 1945 121 11 11 chr3 147148766 147149084 -70888074 - AluSq SINE Alu 0 318 1 1073 246 94 18 chr3 147149084 147149190 -70887968 - L1MEc LINE L1 -5463 933 836 * 1407 209 127 16 chr3 147149188 147149739 -70887419 + L1MC5 LINE L1 7314 7925 -36 328 313 52 81 chr3 147149744 147149903 -70887255 + L2 LINE L2 3020 3173 -99 2154 100 0 4 chr3 147149903 147150184 -70886974 - AluSx SINE Alu -32 280 1 328 313 52 81 chr3 147150184 147150235 -70886923 + L2 LINE L2 3173 3224 -48 263 290 16 0 chr3 147150801 147150863 -70886295 + (CA)n Simple_repeat Simple_repeat 2 64 0 310 234 32 43 chr3 147150865 147150959 -70886199 - L2 LINE L2 -28 3244 3152 202 196 0 36 chr3 147151027 147151083 -70886075 + (TTTA)n Simple_repeat Simple_repeat 4 57 0 232 298 0 0 chr3 147151589 147151646 -70885512 + (TAA)n Simple_repeat Simple_repeat 1 57 0 315 272 107 90 chr3 147151814 147151886 -70885272 - L1M2 LINE L1 -5598 1251 1182 258 32 0 0 chr3 147151886 147151917 -70885241 + (GGA)n Simple_repeat Simple_repeat 2 32 0 315 272 107 90 chr3 147151917 147152245 -70884913 - L1M2 LINE L1 -5667 1182 844 201 39 0 0 chr3 147152254 147152280 -70884878 + (CGGTG)n Simple_repeat Simple_repeat 5 30 0 3194 179 90 4 chr3 147152548 147153258 -70883900 - L1MC3 LINE L1 -8 7777 7007 2482 78 0 0 chr3 147154487 147154793 -70882365 + AluSc SINE Alu 1 306 -3 1496 112 4 17 chr3 147155742 147155983 -70881175 - L1PA14 LINE L1 -2 6159 5922 738 265 150 29 chr3 147156473 147156847 -70880311 - L2 LINE L2 -12 3301 2883 * 758 268 37 37 chr3 147156822 147157143 -70880015 - L2 LINE L2 -1472 1842 1522 2568 49 0 0 chr3 147157147 147157451 -70879707 + AluYa5 SINE Alu 5 308 -3 1178 117 47 0 chr3 147157451 147157622 -70879536 + AluSg/x SINE Alu 132 310 0 1406 201 108 27 chr3 147157628 147157997 -70879161 - L2 LINE L2 -1779 1535 1137 1058 96 0 0 chr3 147158297 147158433 -70878725 + AluJb SINE Alu 1 136 -176 1099 165 11 6 chr3 147158460 147158636 -70878522 + AluJb SINE Alu 121 297 -15 2243 78 0 0 chr3 147158694 147158965 -70878193 + AluSg SINE Alu 1 271 -39 2272 113 0 7 chr3 147159412 147159722 -70877436 + AluSp SINE Alu 1 308 -5 486 0 0 0 chr3 147159738 147159792 -70877366 + (TC)n Simple_repeat Simple_repeat 1 54 0 644 230 71 0 chr3 147160475 147160671 -70876487 + L1ME3A LINE L1 5953 6162 -8 2275 105 0 0 chr3 147160693 147160999 -70876159 + AluSq SINE Alu 1 306 -7 432 97 0 0 chr3 147162235 147162297 -70874861 + (CATA)n Simple_repeat Simple_repeat 4 65 0 2561 90 6 0 chr3 147162297 147162652 -70874506 + L1PB1 LINE L1 5793 6149 -2 345 47 0 0 chr3 147163439 147163482 -70873676 + (TG)n Simple_repeat Simple_repeat 1 43 0 3399 168 19 48 chr3 147163711 147164860 -70872298 - L1P5 LINE L1 -523 5628 4522 5698 181 27 15 chr3 147165038 147166801 -70870357 - L1P4 LINE L1 -417 5749 3977 2642 118 16 0 chr3 147166940 147167373 -70869785 - L1M2 LINE L1 -532 5759 5320 399 122 49 0 chr3 147167381 147167463 -70869695 - L1MB3 LINE L1 -8 6175 6090 3049 140 113 28 chr3 147167470 147168447 -70868711 - L1MA4 LINE L1 -280 6020 4960 269 227 0 45 chr3 147168495 147168583 -70868575 - L1MC3 LINE L1 -1 7784 7701 3490 139 34 1 chr3 147168706 147169768 -70867390 - L1P4 LINE L1 -435 5733 4640 2458 80 10 6 chr3 147170047 147170359 -70866799 - AluSp SINE Alu 0 313 1 2200 112 3 0 chr3 147170760 147171056 -70866102 + AluSc SINE Alu 1 297 -12 2318 105 0 7 chr3 147171068 147171373 -70865785 + AluSx SINE Alu 1 303 -9 1245 174 26 89 chr3 147171654 147171812 -70865346 + AluJb SINE Alu 1 133 -179 2283 87 3 10 chr3 147171812 147172110 -70865048 + AluSp SINE Alu 3 298 -15 1245 174 26 89 chr3 147172110 147172255 -70864903 + AluJb SINE Alu 132 285 -27 203 30 0 61 chr3 147172255 147172288 -70864870 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 183 149 128 21 chr3 147172371 147172418 -70864740 - L2 LINE L2 -5 3308 3257 717 83 0 0 chr3 147172527 147172623 -70864535 - AluY SINE Alu -215 96 1 221 271 29 14 chr3 147172691 147172761 -70864397 - L3 LINE CR1 -592 985 915 310 176 138 38 chr3 147172772 147172931 -70864227 - L1MEc LINE L1 -3515 2700 2526 1368 154 5 5 chr3 147172998 147173218 -70863940 + AluJb SINE Alu 85 304 -8 682 183 0 38 chr3 147173232 147173363 -70863795 - FLAM_C SINE Alu -17 126 1 1607 186 92 36 chr3 147173378 147173879 -70863279 - L1MEc LINE L1 -5465 931 403 484 71 0 0 chr3 147173897 147173967 -70863191 - Alu SINE Alu -6 306 237 818 212 96 66 chr3 147173976 147174311 -70862847 - L1MEc LINE L1 -6013 383 39 896 198 0 16 chr3 147174344 147174536 -70862622 - MER3 DNA MER1_type -19 190 2 38 0 0 0 chr3 147174617 147174655 -70862503 + AT_rich Low_complexity Low_complexity 1 38 0 2113 116 0 0 chr3 147174677 147175000 -70862158 - AluSx SINE Alu 0 323 1 1828 165 3 29 chr3 147175459 147175775 -70861383 - AluSx SINE Alu -4 308 1 509 108 0 12 chr3 147175784 147175867 -70861291 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 1655 204 183 9 chr3 147175977 147176911 -70860247 + L1ME LINE L1 4677 5772 -394 210 158 0 0 chr3 147176950 147176988 -70860170 + (TA)n Simple_repeat Simple_repeat 2 39 0 600 85 0 0 chr3 147177013 147177095 -70860063 + AluSp/q SINE Alu 224 305 -8 277 141 103 0 chr3 147177097 147177175 -70859983 + L1MB7 LINE L1 6099 6184 0 527 265 111 28 chr3 147177404 147177728 -70859430 + L1ME4a LINE L1 5506 5856 -265 291 266 89 41 chr3 147177764 147177933 -70859225 + L1ME4a LINE L1 5944 6120 -1 286 211 195 24 chr3 147177945 147178068 -70859090 - L1ME4a LINE L1 -3 6118 5975 300 218 369 11 chr3 147178738 147178917 -70858241 + MIR SINE MIR 20 262 0 1977 112 37 27 chr3 147178959 147179253 -70857905 + AluSg SINE Alu 9 305 -5 180 0 0 0 chr3 147179257 147179277 -70857881 + (TA)n Simple_repeat Simple_repeat 1 20 0 539 276 151 31 chr3 147179280 147179505 -70857653 + MIR SINE MIR 8 259 -3 382 245 113 9 chr3 147179750 147179856 -70857302 + L2 LINE L2 3147 3263 -9 300 279 90 18 chr3 147180439 147180550 -70856608 - L1ME4a LINE L1 -40 6081 5963 2527 62 0 0 chr3 147180717 147181023 -70856135 - AluY SINE Alu -5 306 1 298 172 17 17 chr3 147181407 147181465 -70855693 - L2 LINE L2 -1 3271 3214 933 243 87 34 chr3 147181699 147181923 -70855235 + L1MC5 LINE L1 6668 6879 -1082 2175 120 29 32 chr3 147181923 147182299 -70854859 + THE1C LTR MaLR 1 375 0 933 243 87 34 chr3 147182299 147182522 -70854636 + L1MC5 LINE L1 6879 7139 -822 2110 97 3 7 chr3 147183159 147183447 -70853711 - AluSx SINE Alu -19 293 7 1410 103 52 40 chr3 147184042 147184314 -70852844 + L1MA2 LINE L1 6030 6304 0 216 0 0 0 chr3 147184341 147184365 -70852793 + (A)n Simple_repeat Simple_repeat 1 24 0 2108 107 14 10 chr3 147184384 147184674 -70852484 + AluSx SINE Alu 1 291 -21 778 171 8 8 chr3 147186374 147186503 -70850655 + FLAM_C SINE Alu 1 129 -4 1991 64 4 0 chr3 147186658 147186909 -70850249 + L1PA7 LINE L1 5762 6013 -141 29199 95 12 16 chr3 147187010 147191207 -70845951 - L1P LINE L1 -1964 4182 4 839 245 164 3 chr3 147191216 147191514 -70845644 - L1M4 LINE L1 -2097 4049 3704 982 98 0 15 chr3 147191515 147191648 -70845510 - FLAM_C SINE Alu -5 138 8 2260 210 51 76 chr3 147191655 147191877 -70845281 - L1M4 LINE L1 -2434 3712 3486 2234 112 3 10 chr3 147191877 147192181 -70844977 - AluSp SINE Alu -11 302 1 2260 210 51 76 chr3 147192181 147192721 -70844437 - L1M4 LINE L1 -2660 3486 2971 1505 206 34 14 chr3 147192721 147193012 -70844146 - AluJo SINE Alu -15 297 1 2260 210 51 76 chr3 147193012 147193094 -70844064 - L1M4 LINE L1 -3175 2971 2888 2103 68 38 0 chr3 147193202 147193466 -70843692 - AluSc SINE Alu -35 274 1 538 311 92 31 chr3 147193960 147194253 -70842905 - LTR16A LTR ERVL -124 326 16 755 119 32 45 chr3 147194555 147194773 -70842385 - AluJb SINE Alu -15 297 2 2049 128 3 0 chr3 147195545 147195850 -70841308 + AluSx SINE Alu 1 306 0 854 290 120 65 chr3 147195895 147196702 -70840456 + L2 LINE L2 2203 3055 -217 223 313 236 7 chr3 147196876 147197020 -70840138 - MIR3 SINE MIR -1 207 31 185 88 18 70 chr3 147197495 147197552 -70839606 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 2483 71 0 0 chr3 147197727 147198023 -70839135 + AluSg SINE Alu 1 296 -14 1680 178 14 7 chr3 147198067 147198353 -70838805 + AluJo SINE Alu 1 288 -24 215 229 21 0 chr3 147198510 147198558 -70838600 - L2 LINE L2 -15 3257 3209 1932 156 0 7 chr3 147198895 147199202 -70837956 + AluJo SINE Alu 1 305 -7 812 185 15 0 chr3 147199208 147199338 -70837820 + FLAM_C SINE Alu 1 132 -1 1420 119 35 9 chr3 147199360 147199587 -70837571 + MSTB LTR MaLR 194 426 0 2386 77 0 16 chr3 147200057 147200368 -70836790 + AluY SINE Alu 1 306 -5 187 333 78 20 chr3 147200918 147201020 -70836138 + L3 LINE CR1 436 543 -1034 2219 96 3 10 chr3 147201197 147201499 -70835659 - AluSx SINE Alu -12 300 1 924 151 0 14 chr3 147201636 147201782 -70835376 - AluJb SINE Alu -1 311 168 1478 172 31 14 chr3 147201851 147202141 -70835017 - AluJo SINE Alu -16 296 2 2194 111 10 0 chr3 147202447 147202754 -70834404 + AluSx SINE Alu 1 310 -2 372 102 0 0 chr3 147203115 147203164 -70833994 + AluSg SINE Alu 35 83 -217 2534 48 0 22 chr3 147203267 147203581 -70833577 + AluY SINE Alu 1 307 -4 2924 218 99 39 chr3 147203589 147204598 -70832560 - L1M4 LINE L1 -1248 4898 3603 2307 78 26 13 chr3 147204598 147204906 -70832252 - AluSp SINE Alu 0 313 2 2924 218 99 39 chr3 147204906 147205412 -70831746 - L1M4 LINE L1 -2543 3603 3129 1629 124 20 0 chr3 147205414 147205663 -70831495 - AluSx SINE Alu -9 303 50 547 132 0 0 chr3 147205717 147205793 -70831365 - AluS SINE Alu -237 76 1 22 35 0 0 chr3 147205880 147205909 -70831249 + AT_rich Low_complexity Low_complexity 1 29 0 2249 76 33 0 chr3 147206052 147206353 -70830805 - AluY SINE Alu 0 311 1 2086 125 3 25 chr3 147207394 147207713 -70829445 - AluSq SINE Alu 0 313 2 2123 92 7 10 chr3 147207716 147208010 -70829148 - AluSc SINE Alu -16 293 1 697 195 16 8 chr3 147208037 147208160 -70828998 - FLAM_A SINE Alu -9 124 1 773 214 101 19 chr3 147208160 147208417 -70828741 - L1M4 LINE L1 -3098 3048 2771 2280 103 0 10 chr3 147208834 147209136 -70828022 - AluSq SINE Alu -14 299 1 2110 129 0 7 chr3 147209136 147209430 -70827728 - AluSx SINE Alu -19 293 1 263 301 55 0 chr3 147209541 147209614 -70827544 + L2 LINE L2 3144 3220 -52 996 138 40 0 chr3 147209692 147209844 -70827314 - FRAM SINE Alu -20 156 1 26 30 0 0 chr3 147212557 147212590 -70824568 + AT_rich Low_complexity Low_complexity 1 33 0 205 182 0 0 chr3 147213302 147213346 -70823812 + T-rich Low_complexity Low_complexity 2 45 0 781 190 33 0 chr3 147214608 147214729 -70822429 + FLAM_A SINE Alu 1 125 -8 1832 133 19 0 chr3 147215578 147215849 -70821309 - AluJo SINE Alu -36 276 1 2218 98 0 0 chr3 147218387 147218672 -70818486 - AluSx SINE Alu -18 294 10 2239 109 0 3 chr3 147219258 147219552 -70817606 - AluSx SINE Alu -19 293 1 1983 146 0 7 chr3 147219558 147219853 -70817305 - AluSx SINE Alu -19 293 1 330 308 86 26 chr3 147220286 147220403 -70816755 - L2 LINE L2 -4 3268 3145 273 271 71 59 chr3 147220433 147220518 -70816640 + MIR SINE MIR 16 101 -161 811 164 58 69 chr3 147220656 147220845 -70816313 + MER20 DNA MER1_type 3 189 -30 418 285 225 16 chr3 147220892 147221274 -70815884 + L2 LINE L2 2154 2615 -699 203 256 195 0 chr3 147221353 147221435 -70815723 + L2 LINE L2 2932 3029 -243 457 276 276 45 chr3 147221456 147222035 -70815123 + L2 LINE L2 2576 3308 -5 203 30 0 61 chr3 147222118 147222151 -70815007 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 1271 164 26 89 chr3 147222151 147222296 -70814862 - AluJb SINE Alu -27 285 167 2337 77 3 10 chr3 147222296 147222594 -70814564 - AluSp SINE Alu -15 298 3 1271 164 26 89 chr3 147222594 147222752 -70814406 - AluJb SINE Alu -145 167 1 33372 101 20 58 chr3 147222989 147228325 -70808833 - L1P3 LINE L1 -640 5514 420 194 0 39 0 chr3 147228325 147228351 -70808807 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 33372 101 20 58 chr3 147228351 147228746 -70808412 - L1P3 LINE L1 -5734 420 12 7568 195 27 60 chr3 147228756 147228910 -70808248 - L1P LINE L1 -978 5168 5010 1869 155 3 23 chr3 147228910 147229213 -70807945 - AluSx SINE Alu -15 297 1 7568 195 27 60 chr3 147229213 147229595 -70807563 - L1P LINE L1 -1136 5010 4617 2133 102 0 0 chr3 147229595 147229869 -70807289 - AluSq SINE Alu -39 274 1 7568 195 27 60 chr3 147229869 147231201 -70805957 - L1P LINE L1 -1529 4617 3361 237 238 0 16 chr3 147231204 147231267 -70805891 + MLT1K LTR MaLR 524 585 -3 290 262 101 42 chr3 147231583 147231797 -70805361 - L1MCa LINE L1 -838 1949 1557 990 205 123 4 chr3 147231871 147232153 -70805005 + MER58 DNA MER1_type 1 2419 -1 1023 258 104 50 chr3 147233563 147233955 -70803203 - HAL1b LINE L1 -523 825 455 189 0 0 0 chr3 147233955 147233976 -70803182 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 1023 258 104 50 chr3 147233976 147234315 -70802843 - HAL1b LINE L1 -893 455 55 276 277 69 10 chr3 147234380 147234481 -70802677 - L1M1 LINE L1 -485 5817 5711 1835 149 0 14 chr3 147234507 147234789 -70802369 - AluJb SINE Alu -34 278 1 384 214 119 0 chr3 147235157 147235241 -70801917 + LTR33 LTR ERVL 4 97 -424 222 37 0 0 chr3 147235264 147235291 -70801867 + (A)n Simple_repeat Simple_repeat 1 27 0 2463 80 0 10 chr3 147235766 147236080 -70801078 - AluSp SINE Alu -2 311 1 2381 103 7 0 chr3 147236730 147237040 -70800118 - AluSx SINE Alu 0 312 1 1540 155 6 115 chr3 147237051 147237374 -70799784 - AluJo SINE Alu -12 290 3 180 374 40 30 chr3 147237478 147237577 -70799581 + L2 LINE L2 2954 3053 -219 2179 93 4 4 chr3 147238113 147238393 -70798765 + AluSp SINE Alu 1 280 -33 252 0 0 0 chr3 147238393 147238421 -70798737 + (CA)n Simple_repeat Simple_repeat 1 28 0 859 141 23 51 chr3 147239645 147239822 -70797336 - L1MB5 LINE L1 -8 6166 5995 678 168 203 28 chr3 147239879 147240022 -70797136 - FAM SINE Alu -6 169 2 2401 96 0 0 chr3 147240075 147240377 -70796781 + AluSx SINE Alu 3 304 -8 244 271 96 56 chr3 147240829 147240995 -70796163 - HAL1 LINE L1 -46 2461 2303 1968 143 0 10 chr3 147240995 147241288 -70795870 + AluSx SINE Alu 1 290 -22 183 100 0 0 chr3 147241288 147241318 -70795840 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 244 271 96 56 chr3 147241318 147241401 -70795757 - HAL1 LINE L1 -203 2304 2201 21 0 0 0 chr3 147241430 147241451 -70795707 + AT_rich Low_complexity Low_complexity 1 21 0 1439 243 112 35 chr3 147241460 147241876 -70795282 - HAL1 LINE L1 -480 2027 1644 1376 138 50 116 chr3 147241876 147242028 -70795130 - AluJo SINE Alu -15 297 175 1960 120 7 36 chr3 147242028 147242329 -70794829 - AluSq SINE Alu -21 292 1 1376 138 50 116 chr3 147242329 147242494 -70794664 - AluJo SINE Alu -137 175 1 1439 243 112 35 chr3 147242494 147242817 -70794341 - HAL1 LINE L1 -863 1644 1231 388 187 4 40 chr3 147242820 147242931 -70794227 + MER33 DNA MER1_type 1 106 -97 276 177 101 0 chr3 147242938 147243017 -70794141 + MER33 DNA MER1_type 262 348 -15 2816 216 100 38 chr3 147243047 147244067 -70793091 - HAL1 LINE L1 -1300 1207 125 1213 191 0 14 chr3 147244387 147244607 -70792551 - AluJo SINE Alu -11 301 85 340 255 124 46 chr3 147245360 147245513 -70791645 + L3 LINE CR1 1402 1566 -11 822 120 0 93 chr3 147245752 147245902 -70791256 - AluSg/x SINE Alu -29 281 146 2167 145 20 0 chr3 147246491 147246849 -70790309 + MER47A DNA MER2_type 2 366 0 475 276 161 9 chr3 147247146 147247363 -70789795 + MIR SINE MIR 11 260 -2 841 277 65 15 chr3 147247750 147248147 -70789011 - L1M4 LINE L1 -2392 3754 3338 433 257 0 7 chr3 147248158 147248310 -70788848 - L1M4 LINE L1 -3224 2922 2772 3440 193 51 37 chr3 147248566 147249498 -70787660 - L1MB8 LINE L1 -45 6133 5216 1806 195 0 0 chr3 147249498 147249795 -70787363 - AluSx SINE Alu -15 297 1 3440 193 51 37 chr3 147249795 147250007 -70787151 - L1MB8 LINE L1 -962 5216 5008 532 103 0 0 chr3 147250007 147250085 -70787073 - MADE1 DNA Mariner -2 78 1 3440 193 51 37 chr3 147250085 147250572 -70786586 - L1MB8 LINE L1 -1170 5008 4490 2108 126 0 7 chr3 147250583 147250876 -70786282 - AluSq SINE Alu -22 291 1 857 132 58 74 chr3 147250877 147251067 -70786091 + MER46A DNA MER2_type 47 233 -3 1515 190 14 24 chr3 147251292 147251587 -70785571 - AluJo SINE Alu -18 294 3 21 0 0 0 chr3 147252436 147252457 -70784701 + AT_rich Low_complexity Low_complexity 1 21 0 2762 227 26 19 chr3 147252837 147253679 -70783479 + L1PA16 LINE L1 5310 6157 -9 28 0 0 0 chr3 147254045 147254073 -70783085 + AT_rich Low_complexity Low_complexity 1 28 0 1808 146 3 43 chr3 147254547 147254661 -70782497 + AluJb SINE Alu 1 118 -194 2621 90 17 3 chr3 147254661 147255018 -70782140 - THE1B LTR MaLR 0 364 3 10679 104 35 7 chr3 147255020 147256557 -70780601 - THE1B-int LTR MaLR 0 1580 1 2694 102 3 0 chr3 147256557 147256920 -70780238 - THE1B LTR MaLR 0 364 1 1808 146 3 43 chr3 147256920 147257102 -70780056 + AluJb SINE Alu 117 289 -23 30 0 0 0 chr3 147257526 147257556 -70779602 + AT_rich Low_complexity Low_complexity 1 30 0 195 328 16 0 chr3 147258023 147258087 -70779071 - L2 LINE L2 -3 3269 3205 245 269 21 0 chr3 147258445 147258538 -70778620 + HAL1 LINE L1 1568 1662 -845 389 269 101 68 chr3 147258539 147258837 -70778321 + L1MEc LINE L1 2171 2444 -3771 2350 102 0 0 chr3 147258837 147259141 -70778017 + AluSg1 SINE Alu 1 304 -5 389 269 101 68 chr3 147259141 147259172 -70777986 + L1MEc LINE L1 2444 2473 -3742 25 0 0 0 chr3 147259193 147259218 -70777940 + AT_rich Low_complexity Low_complexity 1 25 0 304 271 200 0 chr3 147259269 147259424 -70777734 + L1ME4a LINE L1 5772 5957 -164 582 300 87 20 chr3 147259645 147259992 -70777166 + L1MC4a LINE L1 5532 5901 -1907 372 320 8 16 chr3 147260243 147260371 -70776787 + MIR3 SINE MIR 15 141 -67 2172 133 0 0 chr3 147260421 147260721 -70776437 + AluSg SINE Alu 1 300 -10 223 178 67 0 chr3 147261575 147261620 -70775538 + L2 LINE L2 3261 3308 -5 2486 57 3 0 chr3 147263160 147263461 -70773697 - AluY SINE Alu -9 302 1 280 279 238 0 chr3 147263527 147263649 -70773509 + L3 LINE CR1 452 602 -975 515 301 132 50 chr3 147263774 147264116 -70773042 + L3 LINE CR1 1198 1567 -10 235 275 72 14 chr3 147264102 147264171 -70772987 + L2 LINE L2 3147 3219 -53 * 183 273 0 0 chr3 147264166 147264210 -70772948 + L3 LINE CR1 878 921 -656 * 22 103 0 0 chr3 147264392 147264470 -70772688 + AT_rich Low_complexity Low_complexity 1 78 0 1052 252 87 99 chr3 147265852 147266624 -70770534 - L2 LINE L2 -1 3312 2559 1882 166 0 3 chr3 147268549 147268844 -70768314 - AluSx SINE Alu -18 294 1 2395 202 94 31 chr3 147268847 147269595 -70767563 - L1MC4a LINE L1 0 7808 7014 1181 120 0 17 chr3 147269598 147269773 -70767385 - AluSg/x SINE Alu -10 302 131 1287 183 25 84 chr3 147269778 147269920 -70767238 - L1MC4a LINE L1 -821 6987 6838 1680 152 27 0 chr3 147269920 147270183 -70766975 - AluJb SINE Alu -29 283 14 1287 183 25 84 chr3 147270183 147270396 -70766762 - L1MC4a LINE L1 -970 6838 6653 337 99 183 0 chr3 147270386 147270457 -70766701 - L1M2 LINE L1 -484 5807 5724 * 1362 253 31 26 chr3 147270460 147270915 -70766243 - L1MEc LINE L1 -5929 467 11 475 275 117 7 chr3 147270894 147271203 -70765955 - L1M4 LINE L1 -1821 4394 4052 * 2339 159 34 5 chr3 147271258 147271674 -70765484 + MSTA LTR MaLR 1 428 0 663 294 88 5 chr3 147271685 147272117 -70765041 - L1M4 LINE L1 -2309 3906 3439 1656 172 18 4 chr3 147272166 147272439 -70764719 + AluJo SINE Alu 1 277 -35 332 236 89 120 chr3 147272681 147272939 -70764219 - HAL1 LINE L1 -13 2494 2245 7514 25 7 1 chr3 147273714 147275362 -70761796 - L1PA4 LINE L1 -2 6153 4497 2360 92 16 0 chr3 147275394 147275697 -70761461 - AluY SINE Alu -3 308 1 491 311 30 41 chr3 147275806 147276073 -70761085 - HAL1 LINE L1 -679 1828 1565 2399 65 3 26 chr3 147276192 147276500 -70760658 - AluY SINE Alu -10 301 1 1999 124 14 0 chr3 147276508 147276791 -70760367 - AluSx SINE Alu -25 287 1 462 269 128 13 chr3 147276791 147277096 -70760062 - HAL1 LINE L1 -1156 1351 1012 2445 154 61 2 chr3 147277113 147277389 -70759769 - L1MA8 LINE L1 -2 6289 6031 2258 112 94 13 chr3 147277389 147277783 -70759375 - MSTA LTR MaLR -2 426 1 2445 154 61 2 chr3 147277783 147278000 -70759158 - L1MA8 LINE L1 -260 6031 5767 1073 146 5 45 chr3 147278002 147278222 -70758936 - L1PA13 LINE L1 -18 6145 5935 227 317 148 7 chr3 147279355 147279497 -70757661 + L2 LINE L2 2419 2580 -734 1130 120 0 0 chr3 147279599 147279757 -70757401 - AluSq SINE Alu -15 298 141 2154 217 58 21 chr3 147279887 147280508 -70756650 - L1PA13 LINE L1 -4647 2927 2296 2159 96 0 7 chr3 147280516 147280797 -70756361 - AluSq SINE Alu -12 301 23 1847 172 24 0 chr3 147280797 147281087 -70756071 - AluJo SINE Alu -15 297 1 640 277 0 8 chr3 147281555 147281793 -70755365 - L1PA13 LINE L1 -5271 2303 2085 1460 316 59 22 chr3 147281826 147282382 -70754776 - L1PA13 LINE L1 -6209 1365 789 988 152 82 0 chr3 147282394 147282552 -70754606 - FRAM SINE Alu -6 170 1 311 308 17 50 chr3 147282560 147282680 -70754478 + L2 LINE L2 3142 3257 -15 2319 76 0 0 chr3 147283521 147283811 -70753347 - AluY SINE Alu -21 290 1 1707 93 13 4 chr3 147284484 147284721 -70752437 - L1PA10 LINE L1 -10 6158 5920 182 213 33 66 chr3 147284803 147284864 -70752294 - MIR SINE MIR 0 262 204 1835 172 33 0 chr3 147285441 147285743 -70751415 + AluJo SINE Alu 1 312 0 2120 149 0 0 chr3 147286436 147286731 -70750427 - AluSx SINE Alu -17 295 1 2071 140 26 44 chr3 147287237 147287579 -70749579 + MER1B DNA MER1_type 2 337 0 327 232 61 0 chr3 147289326 147289408 -70747750 - MIR SINE MIR -71 191 105 688 266 5 5 chr3 147290196 147290388 -70746770 + L1PBa LINE L1 6 197 -6666 * 10080 221 27 34 chr3 147290385 147292618 -70744540 + L1PBa LINE L1 1392 3639 -3223 2198 123 0 3 chr3 147292618 147292928 -70744230 + AluSc SINE Alu 1 309 0 10080 221 27 34 chr3 147292928 147294119 -70743039 + L1PBa LINE L1 3639 4861 -2001 2454 73 0 22 chr3 147294119 147294434 -70742724 + AluY SINE Alu 1 308 -3 10080 221 27 34 chr3 147294434 147294860 -70742298 + L1PBa LINE L1 4861 5288 -1574 1273 223 91 33 chr3 147294964 147295449 -70741709 - L1M4 LINE L1 -3204 2942 2430 27 0 0 0 chr3 147296042 147296069 -70741089 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr3 147296225 147296246 -70740912 + AT_rich Low_complexity Low_complexity 1 21 0 400 214 168 8 chr3 147296350 147296481 -70740677 + MIR SINE MIR 91 242 -20 1069 226 21 46 chr3 147296551 147296790 -70740368 - MER8 DNA MER2_type 0 239 7 872 219 7 7 chr3 147296816 147296971 -70740187 - FRAM SINE Alu -11 155 1 343 275 65 65 chr3 147297320 147297567 -70739591 - HAL1 LINE L1 -1369 1138 892 * 5816 123 18 17 chr3 147297540 147298545 -70738613 - L1PA16 LINE L1 0 6166 5162 2101 126 0 3 chr3 147298547 147298840 -70738318 - AluSx SINE Alu -20 292 1 2184 79 235 24 chr3 147298846 147299224 -70737934 - L1PA8 LINE L1 -5 6167 5710 217 306 19 28 chr3 147299337 147299445 -70737713 + G-rich Low_complexity Low_complexity 3 109 0 820 117 0 0 chr3 147299500 147299611 -70737547 - AluSq/x SINE Alu -201 111 1 929 122 21 117 chr3 147299611 147299691 -70737467 + MER119 DNA MER1_type 413 466 -117 2055 119 3 34 chr3 147299691 147300011 -70737147 + AluSx SINE Alu 1 310 -2 929 122 21 117 chr3 147300011 147300118 -70737040 + MER119 DNA MER1_type 466 582 -1 305 254 66 49 chr3 147300120 147300242 -70736916 - L1ME LINE L1 -466 5655 5532 184 333 15 0 chr3 147300404 147300470 -70736688 + L2 LINE L2 3246 3312 -1 245 95 71 0 chr3 147300546 147300588 -70736570 - MER53 DNA DNA -1 188 144 1644 136 92 0 chr3 147300588 147300861 -70736297 + AluJo SINE Alu 1 298 -14 584 109 160 59 chr3 147300898 147301017 -70736141 + FLAM_C SINE Alu 12 142 -1 7229 64 7 12 chr3 147301019 147301992 -70735166 + L1PA10 LINE L1 5198 6165 -3 1297 140 140 44 chr3 147302013 147302284 -70734874 + AluJb SINE Alu 1 297 -15 478 213 61 49 chr3 147302433 147302526 -70734632 - AluJo/FRAM SINE Alu 0 302 212 2228 80 42 0 chr3 147302526 147302814 -70734344 - AluY SINE Alu -11 300 1 478 213 61 49 chr3 147302814 147302826 -70734332 - AluJo/FRAM SINE Alu -90 212 202 1765 146 0 4 chr3 147302826 147303100 -70734058 - AluSx SINE Alu -13 299 27 478 213 61 49 chr3 147303100 147303157 -70734001 - AluJo/FRAM SINE Alu -100 202 137 4771 116 31 36 chr3 147303160 147303357 -70733801 - L1PA16 LINE L1 -133 6033 5836 2208 81 0 78 chr3 147303357 147303528 -70733630 - AluSp SINE Alu -18 295 112 233 29 0 29 chr3 147303528 147303563 -70733595 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2208 81 0 78 chr3 147303563 147303576 -70733582 - AluSp SINE Alu -201 112 100 2348 70 11 0 chr3 147303576 147303861 -70733297 - AluSp SINE Alu -25 288 1 2208 81 0 78 chr3 147303861 147303995 -70733163 - AluSp SINE Alu -213 100 1 4771 116 31 36 chr3 147303995 147304432 -70732726 - L1PA16 LINE L1 -330 5836 5398 2093 103 19 32 chr3 147304432 147304743 -70732415 - AluSc SINE Alu -2 307 1 4771 116 31 36 chr3 147304743 147304784 -70732374 - L1PA16 LINE L1 -768 5398 5358 2029 123 17 7 chr3 147304784 147305086 -70732072 - AluSx SINE Alu -7 305 1 4771 116 31 36 chr3 147305086 147305289 -70731869 - L1PA16 LINE L1 -808 5358 5152 211 314 0 0 chr3 147307361 147307412 -70729746 + G-rich Low_complexity Low_complexity 3 53 0 46 45 0 0 chr3 147307850 147307917 -70729241 + GC_rich Low_complexity Low_complexity 1 67 0 346 226 71 0 chr3 147310001 147310085 -70727073 + MIR3 SINE MIR 94 183 -25 215 245 0 0 chr3 147311150 147311203 -70725955 + T-rich Low_complexity Low_complexity 1 53 0 2088 85 3 21 chr3 147311303 147311585 -70725573 + AluSq SINE Alu 21 297 -16 1537 202 24 14 chr3 147311981 147312268 -70724890 - AluJo SINE Alu -22 290 1 2491 70 0 3 chr3 147312276 147312576 -70724582 - AluSg SINE Alu -11 299 1 200 167 0 0 chr3 147312617 147312647 -70724511 + L2 LINE L2 3262 3291 -22 1245 150 127 41 chr3 147313199 147313466 -70723692 - AluJo SINE Alu -9 303 14 995 195 0 0 chr3 147313670 147313839 -70723319 - AluSg/x SINE Alu -18 294 126 2385 67 7 0 chr3 147314020 147314320 -70722838 - AluY SINE Alu -9 302 1 1024 155 4 123 chr3 147314439 147314690 -70722468 - AluJb SINE Alu -8 304 84 1461 186 90 4 chr3 147315016 147315295 -70721863 - AluJo SINE Alu -9 303 1 2093 122 3 7 chr3 147315306 147315610 -70721548 - AluSc SINE Alu -6 303 1 425 331 8 0 chr3 147315821 147315951 -70721207 + MER5A DNA MER1_type 12 142 -47 2101 89 13 36 chr3 147316079 147316382 -70720776 - AluSx SINE Alu -16 296 1 1145 166 49 5 chr3 147316659 147316864 -70720294 - MER2 DNA MER2_type 0 345 132 3139 127 57 21 chr3 147316864 147317375 -70719783 - MER1A DNA MER1_type 0 529 1 687 235 0 0 chr3 147317375 147317509 -70719649 - MER2 DNA MER2_type -206 139 6 190 285 98 88 chr3 147317738 147317931 -70719227 - L3 LINE CR1 -139 1438 1244 1810 73 134 8 chr3 147317957 147318204 -70718954 + AluSg SINE Alu 1 278 -32 2104 130 0 3 chr3 147318486 147318778 -70718380 + AluSx SINE Alu 1 291 -21 246 273 0 15 chr3 147318806 147318872 -70718286 + Charlie8 DNA MER1_type 105 169 -2248 3698 107 32 14 chr3 147319036 147319240 -70717918 + L1PB1 LINE L1 5577 5776 -375 189 0 0 0 chr3 147319240 147319261 -70717897 + (TG)n Simple_repeat Simple_repeat 2 22 0 483 63 0 0 chr3 147319261 147319324 -70717834 + (CATA)n Simple_repeat Simple_repeat 2 64 0 3698 107 32 14 chr3 147319324 147319680 -70717478 + L1PB1 LINE L1 5775 6148 -3 1861 166 0 20 chr3 147319861 147320157 -70717001 - AluJo SINE Alu -22 290 1 2206 73 0 0 chr3 147320958 147321257 -70715901 + AluSp SINE Alu 25 323 0 392 290 35 14 chr3 147321274 147321419 -70715739 - L3 LINE CR1 -714 863 716 288 285 177 15 chr3 147321530 147321660 -70715498 + MIR3 SINE MIR 17 167 -41 670 305 60 4 chr3 147322613 147322846 -70714312 + L3 LINE CR1 1299 1544 -33 24 0 0 0 chr3 147323421 147323445 -70713713 + AT_rich Low_complexity Low_complexity 1 24 0 441 231 0 109 chr3 147324817 147324973 -70712185 - L2 LINE L2 -3175 139 1 756 154 103 117 chr3 147327124 147327338 -70709820 + MER58C DNA MER1_type 4 214 -1 759 176 30 0 chr3 147328434 147328565 -70708593 - MER46B DNA MER2_type -201 35 26 317 325 45 58 chr3 147328787 147329030 -70708128 - L1ME3A LINE L1 -100 6070 5831 357 255 78 10 chr3 147329248 147329350 -70707808 + MLT1I LTR MaLR 244 352 -57 193 256 108 78 chr3 147329795 147329924 -70707234 - MIR SINE MIR -110 152 20 23 78 0 0 chr3 147332321 147332372 -70704786 + AT_rich Low_complexity Low_complexity 1 51 0 22 56 0 0 chr3 147332557 147332593 -70704565 + AT_rich Low_complexity Low_complexity 1 36 0 813 278 165 26 chr3 147333272 147333690 -70703468 - L2 LINE L2 0 3313 2838 1162 67 0 7 chr3 147333694 147333843 -70703315 + AluSg/x SINE Alu 156 303 -9 580 259 162 15 chr3 147334254 147334451 -70702707 + MIR SINE MIR 37 262 0 573 299 121 18 chr3 147334834 147335292 -70701866 - L1ME3A LINE L1 -313 5808 5303 806 339 183 35 chr3 147335294 147336851 -70700307 - L2 LINE L2 -206 3066 1278 263 256 0 67 chr3 147336983 147337073 -70700085 - L3 LINE CR1 -919 658 575 552 228 16 16 chr3 147337419 147337546 -70699612 + HsTC2 DNA Tc2 4 130 -1768 1257 197 138 40 chr3 147337558 147337841 -70699317 + HsTC2 DNA Tc2 1258 1512 -386 2066 126 0 55 chr3 147337841 147338166 -70698992 + AluSx SINE Alu 1 307 -5 1257 197 138 40 chr3 147338166 147338303 -70698855 + HsTC2 DNA Tc2 1512 1895 -3 208 154 26 0 chr3 147338541 147338580 -70698578 - L2 LINE L2 -5 3308 3269 408 286 70 22 chr3 147339036 147339263 -70697895 + HAL1 LINE L1 238 475 -2032 415 221 0 12 chr3 147339431 147339517 -70697641 + HAL1 LINE L1 742 826 -1681 2691 191 90 72 chr3 147339537 147340610 -70696548 - L1ME2 LINE L1 -17 6147 5056 458 333 150 6 chr3 147340633 147340960 -70696198 + L2 LINE L2 1997 2370 -944 34 0 0 0 chr3 147341541 147341575 -70695583 + AT_rich Low_complexity Low_complexity 1 34 0 285 228 221 7 chr3 147341802 147341938 -70695220 + MIR3 SINE MIR 9 173 -35 319 239 141 98 chr3 147343556 147343790 -70693368 - L1ME4a LINE L1 -9 6112 5869 318 288 63 26 chr3 147344599 147344790 -70692368 + L1MC4a LINE L1 7218 7415 -393 311 265 77 0 chr3 147344780 147344897 -70692261 + L1MC5 LINE L1 7317 7442 -519 * 3469 215 131 129 chr3 147344918 147345716 -70691442 - L2 LINE L2 -327 2986 2191 562 167 28 9 chr3 147345716 147345824 -70691334 + MER3 DNA MER1_type 3 112 -97 285 222 0 0 chr3 147345827 147345881 -70691277 - MER3 DNA MER1_type -119 90 37 3469 215 131 129 chr3 147345881 147345944 -70691214 - L2 LINE L2 -1123 2190 2129 1985 203 38 61 chr3 147345944 147346472 -70690686 + LTR40a LTR ERVL 4 519 0 3469 215 131 129 chr3 147346472 147347317 -70689841 - L2 LINE L2 -1184 2129 1018 897 400 125 50 chr3 147347316 147347859 -70689299 + L2 LINE L2 229 812 -2502 * 751 130 7 7 chr3 147348128 147348266 -70688892 + (GA)n Simple_repeat Simple_repeat 1 138 0 1956 134 64 19 chr3 147348390 147348459 -70688699 - THE1C LTR MaLR 0 375 311 2229 117 22 35 chr3 147348459 147348828 -70688330 + THE1B LTR MaLR 1 364 0 1956 134 64 19 chr3 147348828 147349117 -70688041 - THE1C LTR MaLR -64 311 1 449 286 118 0 chr3 147349117 147349278 -70687880 - MIR SINE MIR -36 226 47 256 177 32 32 chr3 147349416 147349478 -70687680 + GA-rich Low_complexity Low_complexity 4 65 0 189 346 25 0 chr3 147350219 147350300 -70686858 + L2 LINE L2 3230 3312 -1 782 267 102 54 chr3 147351421 147351994 -70685164 + L2 LINE L2 2503 3293 -20 2257 97 21 0 chr3 147354184 147354473 -70682685 - AluSx SINE Alu -17 295 1 420 131 131 0 chr3 147355431 147355515 -70681643 - L1MD3 LINE L1 -8 7987 7893 2076 128 3 10 chr3 147355569 147355881 -70681277 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr3 147356196 147356218 -70680940 + AT_rich Low_complexity Low_complexity 1 22 0 34 24 0 0 chr3 147356453 147356494 -70680664 + AT_rich Low_complexity Low_complexity 1 41 0 334 257 105 13 chr3 147356826 147356978 -70680180 + L1ME LINE L1 5106 5271 -875 750 325 99 7 chr3 147357082 147357497 -70679661 - MLT1J LTR MaLR -56 455 3 353 203 148 23 chr3 147357505 147357633 -70679525 + L1ME LINE L1 5337 5480 -2328 460 271 70 12 chr3 147357739 147357949 -70679209 + L1ME LINE L1 5547 5762 -359 247 162 81 27 chr3 147357954 147358028 -70679130 + L2 LINE L2 3107 3184 -129 626 272 253 8 chr3 147358947 147359212 -70677946 - L2 LINE L2 -374 2940 2611 1652 223 65 29 chr3 147359225 147359673 -70677485 - L2 LINE L2 -1064 2250 1787 360 257 0 0 chr3 147359733 147359803 -70677355 + L2 LINE L2 3198 3267 -5 322 279 184 19 chr3 147360226 147360384 -70676774 - MIR SINE MIR 0 262 79 4709 151 51 14 chr3 147360385 147361581 -70675577 + L1MB5 LINE L1 4902 6143 -31 339 284 118 31 chr3 147362861 147363090 -70674068 + L2 LINE L2 1759 2007 -1307 718 318 102 41 chr3 147363293 147363395 -70673763 + L2 LINE L2 2045 2139 -1175 349 222 148 49 chr3 147363395 147363557 -70673601 + MER5B DNA MER1_type 1 178 0 718 318 102 41 chr3 147363557 147363578 -70673580 + L2 LINE L2 2139 2157 -1157 850 221 96 78 chr3 147363578 147363913 -70673245 - MER102b DNA MER1_type 0 341 1 718 318 102 41 chr3 147363913 147364418 -70672740 + L2 LINE L2 2157 2712 -602 214 296 14 0 chr3 147364421 147364492 -70672666 + (TA)n Simple_repeat Simple_repeat 1 72 0 939 227 147 3 chr3 147364492 147364778 -70672380 + L1MC4a LINE L1 5614 5940 -1868 214 240 146 42 chr3 147364891 147364987 -70672171 - MER5B DNA MER1_type -72 106 1 503 309 66 81 chr3 147365048 147365443 -70671715 + L2 LINE L2 2882 3270 -2 1015 229 5 22 chr3 147365534 147365757 -70671401 + MER20 DNA MER1_type 1 219 0 288 0 0 0 chr3 147368222 147368254 -70668904 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr3 147368914 147368935 -70668223 + AT_rich Low_complexity Low_complexity 1 21 0 195 312 83 46 chr3 147371122 147371231 -70665927 - L2 LINE L2 0 3272 3160 1993 150 0 0 chr3 147372957 147373250 -70663908 - AluJb SINE Alu -19 293 1 580 71 3 0 chr3 147373686 147373778 -70663380 + L1M3 LINE L1 5670 5763 -417 607 69 241 17 chr3 147373851 147373967 -70663191 + L1PBa LINE L1 2204 2345 -4518 1081 235 114 0 chr3 147374098 147374362 -70662796 - MER119 DNA MER1_type -285 298 5 2425 77 3 0 chr3 147374417 147374727 -70662431 - AluY SINE Alu 0 311 1 568 259 164 60 chr3 147374727 147375075 -70662083 + L1ME4a LINE L1 5677 6060 -61 275 356 81 31 chr3 147375618 147375778 -70661380 + L2 LINE L2 3103 3270 -2 1848 163 0 7 chr3 147376329 147376623 -70660535 + AluJb SINE Alu 1 292 -20 22 0 0 0 chr3 147377055 147377077 -70660081 + AT_rich Low_complexity Low_complexity 1 22 0 522 284 123 13 chr3 147377232 147377387 -70659771 - L2 LINE L2 0 3272 3101 2278 70 3 14 chr3 147377929 147378215 -70658943 + AluY SINE Alu 16 298 -13 1773 154 18 4 chr3 147378352 147378669 -70658489 - AluJb SINE Alu 0 321 1 430 218 0 11 chr3 147378786 147378873 -70658285 + MIR SINE MIR 75 160 -102 2219 125 0 0 chr3 147378876 147379172 -70657986 + AluSq SINE Alu 1 296 -17 718 197 113 0 chr3 147379172 147379314 -70657844 + AluJb SINE Alu 134 291 -21 975 174 46 15 chr3 147379314 147379509 -70657649 - MIR SINE MIR -57 205 5 778 301 68 27 chr3 147379510 147379879 -70657279 - L2 LINE L2 -900 2414 2031 2339 100 3 0 chr3 147380043 147380352 -70656806 - AluSx SINE Alu -2 310 1 691 117 31 47 chr3 147380823 147380951 -70656207 + FLAM_C SINE Alu 9 134 -9 1001 235 46 111 chr3 147381113 147381585 -70655573 - MLT1J LTR MaLR -6 505 71 2287 98 3 0 chr3 147381585 147381882 -70655276 - AluSg SINE Alu -12 298 1 1001 235 46 111 chr3 147381882 147381949 -70655209 - MLT1J LTR MaLR -440 71 1 2029 101 0 104 chr3 147382350 147382695 -70654463 + AluSg SINE Alu 1 309 -1 926 163 4 116 chr3 147382695 147382775 -70654383 + MER115 DNA AcHobo 487 574 -119 2027 136 0 7 chr3 147382775 147383077 -70654081 - AluSx SINE Alu -12 300 1 926 163 4 116 chr3 147383077 147383229 -70653929 + MER115 DNA AcHobo 574 693 0 2045 132 0 17 chr3 147384141 147384273 -70652885 + AluSx SINE Alu 5 138 -174 2241 93 26 3 chr3 147384273 147384575 -70652583 + AluSx SINE Alu 1 309 -3 2045 132 0 17 chr3 147384575 147384738 -70652420 + AluSx SINE Alu 138 295 -17 771 165 0 0 chr3 147384854 147384981 -70652177 - FLAM_C SINE Alu -16 127 1 2292 111 0 0 chr3 147384991 147385289 -70651869 - AluSx SINE Alu -14 298 1 1004 159 0 0 chr3 147385440 147385622 -70651536 - AluSg/x SINE Alu 0 315 134 2327 95 3 3 chr3 147385622 147385928 -70651230 - AluSx SINE Alu -6 306 1 316 322 75 48 chr3 147385928 147386263 -70650895 + L2 LINE L2 2130 2473 -841 1055 187 32 61 chr3 147386381 147386469 -70650689 - MER8 DNA MER2_type 0 239 150 2415 80 0 0 chr3 147386469 147386770 -70650388 + AluY SINE Alu 1 301 -10 1055 187 32 61 chr3 147386770 147386927 -70650231 - MER8 DNA MER2_type -89 150 1 302 248 52 13 chr3 147386937 147387090 -70650068 - L1ME4a LINE L1 -139 5982 5824 1288 138 97 127 chr3 147387095 147387559 -70649599 - LTR7 LTR ERV1 0 450 1 2402 139 9 9 chr3 147387559 147387990 -70649168 - HERVH LTR ERV1 0 7713 7283 6581 134 10 5 chr3 147388002 147389716 -70647442 - HERVH LTR ERV1 -1840 5251 3357 * 7477 186 18 50 chr3 147389709 147390256 -70646902 - HERVH LTR ERV1 -3576 3078 2515 2240 98 0 0 chr3 147390256 147390553 -70646605 + AluY SINE Alu 1 297 -14 7477 186 18 50 chr3 147390553 147392458 -70644700 - HERVH LTR ERV1 -4139 2515 801 1857 180 101 28 chr3 147392512 147392940 -70644218 - HERVH LTR ERV1 -7254 459 1 1239 167 121 74 chr3 147392940 147393370 -70643788 - LTR7 LTR ERV1 0 450 1 1026 150 64 0 chr3 147393370 147393543 -70643615 + MER5A DNA MER1_type 6 189 0 2307 74 0 3 chr3 147393556 147393854 -70643304 - AluY SINE Alu -14 297 1 315 264 11 11 chr3 147393858 147393949 -70643209 - L1ME4a LINE L1 -296 5825 5735 44632 37 5 4 chr3 147393963 147400097 -70637061 + L1PA3 LINE L1 14 6155 0 2159 107 0 19 chr3 147400122 147400440 -70636718 + AluSp SINE Alu 1 312 -1 1906 153 0 0 chr3 147400537 147400838 -70636320 - AluSx SINE Alu -11 301 1 555 251 89 116 chr3 147401094 147401646 -70635512 - L2 LINE L2 0 3313 2782 1995 136 0 0 chr3 147401646 147401940 -70635218 + AluSx SINE Alu 1 294 -18 555 251 89 116 chr3 147401940 147401985 -70635173 - L2 LINE L2 -531 2782 2737 908 182 0 0 chr3 147402002 147402161 -70634997 + AluJb SINE Alu 131 289 -23 363 197 27 158 chr3 147402297 147402428 -70634730 - L2 LINE L2 -1219 2095 1993 1752 154 3 43 chr3 147402428 147402753 -70634405 + AluJb SINE Alu 1 312 0 363 197 27 158 chr3 147402753 147402804 -70634354 - L2 LINE L2 -1321 1993 1937 1507 241 44 51 chr3 147403116 147403482 -70633676 + LTR16B LTR ERVL 1 365 -99 2258 88 0 7 chr3 147403482 147403789 -70633369 - AluSx SINE Alu -7 305 1 1507 241 44 51 chr3 147403789 147403850 -70633308 + LTR16B LTR ERVL 365 425 -39 1042 334 30 26 chr3 147403872 147404375 -70632783 + HERV16 LTR ERVL 3 507 -4489 1855 140 29 13 chr3 147404693 147404828 -70632330 + AluJb SINE Alu 1 132 -180 2157 120 3 0 chr3 147404828 147405137 -70632021 + AluSg SINE Alu 1 310 0 1855 140 29 13 chr3 147405137 147405308 -70631850 + AluJb SINE Alu 132 312 0 903 267 80 75 chr3 147405364 147405758 -70631400 + HERV16 LTR ERVL 4505 4903 -93 1321 132 123 134 chr3 147405758 147406228 -70630930 + MER4C LTR ERV1 1 465 0 903 267 80 75 chr3 147406228 147406323 -70630835 + HERV16 LTR ERVL 4903 4996 0 1082 258 68 63 chr3 147406323 147406350 -70630808 + LTR16B LTR ERVL 1 26 -438 2361 79 0 0 chr3 147406350 147406655 -70630503 + AluY SINE Alu 1 305 -6 1082 258 68 63 chr3 147406655 147407085 -70630073 + LTR16B LTR ERVL 26 460 -4 585 274 59 27 chr3 147407739 147407925 -70629233 + MLT1J2 LTR MaLR 259 450 0 2048 89 6 54 chr3 147408335 147408650 -70628508 - AluSx SINE Alu -12 300 1 380 318 100 29 chr3 147408659 147408829 -70628329 - MIR SINE MIR -13 249 68 240 253 58 11 chr3 147409174 147409261 -70627897 + LTR16B LTR ERVL 244 334 -130 1915 122 35 0 chr3 147409335 147409623 -70627535 - AluSx SINE Alu -14 298 1 275 148 19 0 chr3 147409624 147409678 -70627480 + Zaphod DNA AcHobo 3880 3934 -97 204 357 89 0 chr3 147409909 147410021 -70627137 - L2 LINE L2 -23 3290 3169 814 214 40 0 chr3 147410595 147410768 -70626390 - AluJo SINE Alu 0 312 133 1691 184 3 3 chr3 147410841 147411134 -70626024 + AluJb SINE Alu 1 293 -19 314 237 123 18 chr3 147411147 147411261 -70625897 - AluJo SINE Alu -172 130 5 1523 230 43 50 chr3 147412080 147412264 -70624894 + MLT1C LTR MaLR 6 190 -277 2255 107 0 0 chr3 147412264 147412573 -70624585 + AluSc SINE Alu 1 309 0 1523 230 43 50 chr3 147412573 147412849 -70624309 + MLT1C LTR MaLR 190 463 -4 1269 86 0 11 chr3 147413595 147413770 -70623388 - AluY SINE Alu -138 173 1 1763 161 7 10 chr3 147413876 147414180 -70622978 - AluJo SINE Alu -9 303 1 1040 191 5 27 chr3 147414287 147414340 -70622818 + AluJb SINE Alu 86 139 -173 1845 142 13 10 chr3 147414340 147414642 -70622516 + AluSx SINE Alu 1 303 -9 1040 191 5 27 chr3 147414642 147414808 -70622350 + AluJb SINE Alu 139 300 -12 249 33 0 0 chr3 147414851 147414881 -70622277 + (CA)n Simple_repeat Simple_repeat 2 31 0 1052 155 6 6 chr3 147414910 147415091 -70622067 + AluJo SINE Alu 118 298 -14 587 268 22 51 chr3 147415196 147415511 -70621647 + LTR16B LTR ERVL 34 394 -70 2060 100 7 0 chr3 147415511 147415815 -70621343 - AluSx SINE Alu 0 306 1 587 268 22 51 chr3 147415815 147415881 -70621277 + LTR16B LTR ERVL 394 460 -4 648 209 126 52 chr3 147416124 147416192 -70620966 - MIR SINE MIR -10 252 190 2003 112 0 11 chr3 147416192 147416502 -70620656 + AluSx SINE Alu 1 307 0 648 209 126 52 chr3 147416502 147416662 -70620496 - MIR SINE MIR -72 190 6 293 247 167 14 chr3 147416673 147416818 -70620340 - MIR SINE MIR -21 187 21 402 294 85 26 chr3 147417344 147417497 -70619661 - L2 LINE L2 -4 3268 3107 221 170 21 21 chr3 147418027 147418074 -70619084 + L2 LINE L2 3263 3309 -4 911 184 20 56 chr3 147418284 147418453 -70618705 - MER5A DNA MER1_type 0 189 26 1901 166 69 64 chr3 147418453 147418934 -70618224 + MER31A LTR ERV1 1 483 -2 911 184 20 56 chr3 147418934 147418960 -70618198 - MER5A DNA MER1_type -163 26 1 1395 145 74 0 chr3 147419054 147419296 -70617862 - AluJb SINE Alu -10 302 43 299 254 377 0 chr3 147419306 147419428 -70617730 + MIR SINE MIR 90 257 -5 1974 121 3 16 chr3 147421227 147421532 -70615626 - AluSq SINE Alu -12 301 1 416 239 61 80 chr3 147421551 147421611 -70615547 - L1ME LINE L1 -451 5670 5610 1758 117 45 0 chr3 147421611 147421875 -70615283 - AluSx SINE Alu -14 298 23 1436 130 120 29 chr3 147421877 147422153 -70615005 - AluJo SINE Alu -11 301 1 416 239 61 80 chr3 147422153 147422252 -70614906 - L1ME LINE L1 -512 5609 5511 2265 95 0 0 chr3 147422433 147422739 -70614419 - AluY SINE Alu -5 306 1 1766 140 4 0 chr3 147422741 147423012 -70614146 - AluSx SINE Alu -18 294 23 825 139 8 0 chr3 147423014 147423143 -70614015 - AluJb SINE Alu -6 306 177 198 0 0 0 chr3 147423154 147423176 -70613982 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 819 126 8 0 chr3 147423176 147423295 -70613863 - FLAM_C SINE Alu -21 122 3 315 285 49 111 chr3 147423298 147423442 -70613716 - L1ME LINE L1 -507 5614 5480 2051 120 0 7 chr3 147423561 147423869 -70613289 - AluY SINE Alu -5 306 1 1932 135 10 10 chr3 147423869 147424180 -70612978 - AluSx SINE Alu 0 312 1 2055 92 14 7 chr3 147424228 147424523 -70612635 - AluSp SINE Alu -16 297 1 931 161 0 0 chr3 147425443 147425592 -70611566 - AluSq/x SINE Alu -164 149 1 1749 206 52 25 chr3 147426450 147426891 -70610267 + MLT1D LTR MaLR 53 505 0 2112 104 14 0 chr3 147427004 147427301 -70609857 + AluSx SINE Alu 1 301 -11 247 294 248 35 chr3 147427905 147428418 -70608740 - HAL1 LINE L1 -1837 670 49 1960 127 7 0 chr3 147428534 147428818 -70608340 + AluSx SINE Alu 1 286 -26 1844 132 3 3 chr3 147429112 147429400 -70607758 - AluSx SINE Alu -22 290 3 1639 165 0 14 chr3 147429408 147429728 -70607430 - AluJb SINE Alu 0 316 1 180 313 0 45 chr3 147429939 147430006 -70607152 - L2 LINE L2 -21 3251 3188 1577 215 124 0 chr3 147430022 147430440 -70606718 - Charlie4a DNA MER1_type -1 507 38 253 322 203 13 chr3 147430634 147430787 -70606371 + MIR SINE MIR 32 212 -50 368 206 191 15 chr3 147431785 147431921 -70605237 - HAL1b LINE L1 0 1348 1189 2278 84 0 0 chr3 147432305 147432603 -70604555 - AluSg SINE Alu -12 298 1 1570 170 13 31 chr3 147432605 147432922 -70604236 - AluJb SINE Alu -1 311 1 1038 201 12 87 chr3 147433051 147433082 -70604076 - L1MC4 LINE L1 0 8042 8010 2068 138 0 0 chr3 147433082 147433378 -70603780 + AluSx SINE Alu 3 298 -14 1038 201 12 87 chr3 147433378 147433690 -70603468 - L1MC4 LINE L1 -32 8010 7725 216 158 0 0 chr3 147433774 147433812 -70603346 + (TA)n Simple_repeat Simple_repeat 2 39 0 502 219 61 0 chr3 147433823 147433937 -70603221 - L1MC4 LINE L1 -370 7672 7552 2294 82 0 7 chr3 147433942 147434246 -70602912 + AluY SINE Alu 1 302 -9 2232 86 0 0 chr3 147434264 147434554 -70602604 + AluSg1 SINE Alu 1 290 -19 499 241 56 12 chr3 147434556 147434718 -70602440 - L1MB7 LINE L1 -13 6171 6003 1526 232 39 22 chr3 147434763 147435173 -70601985 - L1ME1 LINE L1 -272 5894 5478 2391 66 0 10 chr3 147435173 147435478 -70601680 - AluY SINE Alu -9 302 1 2066 125 0 0 chr3 147435482 147435779 -70601379 - AluSx SINE Alu -15 297 1 988 158 0 0 chr3 147435783 147435935 -70601223 - AluJb SINE Alu -23 289 138 1449 136 97 51 chr3 147435940 147436224 -70600934 - L1ME1 LINE L1 -696 5482 5213 1925 142 6 6 chr3 147436224 147436535 -70600623 - AluSx SINE Alu -1 311 1 1521 158 37 30 chr3 147436537 147436835 -70600323 - AluJo SINE Alu -12 300 1 1510 194 3 10 chr3 147436844 147437137 -70600021 - AluJb SINE Alu -21 291 1 1449 136 97 51 chr3 147437137 147437290 -70599868 - L1ME1 LINE L1 -972 5206 5017 523 93 0 0 chr3 147437293 147437368 -70599790 - AluSp/q SINE Alu -9 304 230 303 28 0 0 chr3 147437400 147437436 -70599722 + (TG)n Simple_repeat Simple_repeat 2 37 0 483 107 0 0 chr3 147437438 147437513 -70599645 + (TA)n Simple_repeat Simple_repeat 2 76 0 1182 182 113 4 chr3 147437539 147437814 -70599344 - L1ME1 LINE L1 -1136 5010 4706 806 108 0 0 chr3 147437816 147437927 -70599231 - AluSg/x SINE Alu -14 298 188 396 186 104 21 chr3 147438272 147438454 -70598704 + L1P5 LINE L1 5293 5490 -664 1992 124 3 3 chr3 147438454 147438752 -70598406 + AluSx SINE Alu 1 298 -14 1090 188 112 7 chr3 147438754 147439030 -70598128 + L1ME1 LINE L1 4706 5010 -1136 483 107 0 0 chr3 147439056 147439131 -70598027 + (TA)n Simple_repeat Simple_repeat 1 75 0 303 28 0 0 chr3 147439133 147439169 -70597989 + (CA)n Simple_repeat Simple_repeat 2 37 0 525 93 0 0 chr3 147439201 147439276 -70597882 + AluSp/q SINE Alu 230 304 -9 1433 138 95 52 chr3 147439291 147439432 -70597726 + L1ME1 LINE L1 5031 5164 -1014 1621 194 3 10 chr3 147439432 147439725 -70597433 + AluJb SINE Alu 1 291 -21 1635 158 37 30 chr3 147439734 147440032 -70597126 + AluJo SINE Alu 1 300 -12 2047 142 6 6 chr3 147440034 147440345 -70596813 + AluSx SINE Alu 1 311 -1 1433 138 95 52 chr3 147440345 147440629 -70596529 + L1ME1 LINE L1 5171 5482 -696 1054 158 0 0 chr3 147440634 147440786 -70596372 + AluJb SINE Alu 138 289 -23 2187 125 0 0 chr3 147440790 147441087 -70596071 + AluSx SINE Alu 1 297 -15 2525 66 0 10 chr3 147441091 147441396 -70595762 + AluY SINE Alu 1 302 -9 1429 217 57 27 chr3 147441396 147441801 -70595357 + L1ME1 LINE L1 5478 5894 -272 508 252 64 13 chr3 147441793 147442009 -70595149 + L1MB7 LINE L1 5939 6171 -8 * 2359 86 0 0 chr3 147442010 147442300 -70594858 - AluSg1 SINE Alu -19 290 1 2221 75 0 0 chr3 147442318 147442584 -70594574 - AluSc SINE Alu -11 298 33 1336 226 112 77 chr3 147442584 147443156 -70594002 - L1MC4 LINE L1 -1105 6937 6346 237 65 0 0 chr3 147443568 147443599 -70593559 + (T)n Simple_repeat Simple_repeat 1 31 0 277 274 0 55 chr3 147444421 147444494 -70592664 - MIR SINE MIR -173 89 21 186 333 70 32 chr3 147444625 147444781 -70592377 - L3 LINE CR1 -43 1534 1373 1833 147 11 4 chr3 147445360 147445639 -70591519 + AluSx SINE Alu 1 281 -31 1681 143 26 4 chr3 147446112 147446384 -70590774 + AluSx SINE Alu 27 304 -8 2226 121 10 0 chr3 147446485 147446840 -70590318 + AluSx SINE Alu 3 360 0 477 260 58 39 chr3 147447993 147448147 -70589011 + MLT1J1 LTR MaLR 286 442 -4 261 0 0 0 chr3 147448401 147448430 -70588728 + (TG)n Simple_repeat Simple_repeat 2 30 0 2514 88 0 0 chr3 147448769 147449077 -70588081 - AluSg SINE Alu -2 308 1 238 297 148 48 chr3 147449509 147449799 -70587359 - L1MEd LINE L1 -5357 762 444 1317 87 0 0 chr3 147450204 147450365 -70586793 - AluSq SINE Alu -19 294 134 2290 115 0 3 chr3 147450365 147450669 -70586489 - AluSx SINE Alu -9 303 1 32 75 0 0 chr3 147450875 147450942 -70586216 + AT_rich Low_complexity Low_complexity 1 67 0 21 57 0 0 chr3 147451093 147451128 -70586030 + AT_rich Low_complexity Low_complexity 1 35 0 666 279 102 70 chr3 147451501 147451970 -70585188 - L1ME3A LINE L1 -38 6132 5649 1652 164 59 81 chr3 147451970 147452178 -70584980 - Charlie1 DNA MER1_type 0 2761 2550 1903 158 0 0 chr3 147452178 147452463 -70584695 - AluJb SINE Alu -16 296 12 1652 164 59 81 chr3 147452463 147452482 -70584676 - Charlie1 DNA MER1_type -211 2550 2532 2021 124 28 3 chr3 147452482 147452772 -70584386 - AluSx SINE Alu -15 297 1 2335 102 0 0 chr3 147452782 147453085 -70584073 - AluSg SINE Alu -7 303 1 1652 164 59 81 chr3 147453085 147453339 -70583819 - Charlie1 DNA MER1_type -238 2523 2279 679 204 66 15 chr3 147453329 147453466 -70583692 - Charlie1 DNA MER1_type -2611 150 7 * 582 281 132 0 chr3 147453649 147453877 -70583281 - L1ME3A LINE L1 -528 5638 5381 225 154 0 0 chr3 147453878 147453917 -70583241 - Alu SINE Alu -11 297 259 365 125 0 31 chr3 147454025 147454089 -70583069 - AluSx SINE Alu 0 300 239 1619 80 10 0 chr3 147454090 147454291 -70582867 - AluSx SINE Alu -105 207 5 2117 111 0 32 chr3 147454452 147454767 -70582391 - AluSg SINE Alu -5 305 1 1953 148 20 0 chr3 147454800 147455098 -70582060 + AluSx SINE Alu 1 304 -8 2225 121 10 0 chr3 147455199 147455504 -70581654 + AluSx SINE Alu 3 310 -2 216 234 43 0 chr3 147455504 147455568 -70581590 + polypurine Low_complexity Low_complexity 1 66 0 477 260 58 39 chr3 147456705 147456859 -70580299 + MLT1J1 LTR MaLR 286 442 -4 261 0 0 0 chr3 147457113 147457142 -70580016 + (TG)n Simple_repeat Simple_repeat 2 30 0 313 165 13 76 chr3 147457427 147457481 -70579677 + L1MD2 LINE L1 5343 5392 -774 2141 155 0 0 chr3 147457481 147457791 -70579367 - AluSx SINE Alu -2 310 1 313 165 13 76 chr3 147457791 147457815 -70579343 + L1MD2 LINE L1 5392 5416 -750 481 154 4 7 chr3 147457823 147458070 -70579088 + AluJb SINE Alu 1 312 0 2467 226 68 35 chr3 147458072 147458768 -70578390 + L1MD2 LINE L1 5414 6132 -227 21 82 0 0 chr3 147458772 147458821 -70578337 + AT_rich Low_complexity Low_complexity 1 49 0 587 193 22 17 chr3 147459267 147459282 -70577876 - L1 LINE L1 -1653 4493 4480 2224 110 7 0 chr3 147459282 147459574 -70577584 - AluSq SINE Alu -19 294 1 587 193 22 17 chr3 147459574 147459714 -70577444 - L1 LINE L1 -1666 4480 4341 2119 139 0 0 chr3 147459722 147460009 -70577149 - AluSx SINE Alu -23 289 3 983 89 0 0 chr3 147460037 147460161 -70576997 + AluSg/x SINE Alu 173 296 -14 329 330 31 16 chr3 147460341 147460535 -70576623 - L1MC/D LINE L1 -2037 5771 5575 478 121 0 48 chr3 147460710 147460793 -70576365 - MADE1 DNA Mariner 0 80 2 2108 122 3 10 chr3 147461233 147461544 -70575614 + AluSg SINE Alu 1 309 -1 1332 142 49 0 chr3 147461600 147461805 -70575353 - AluSg/x SINE Alu -16 294 80 1380 132 0 23 chr3 147461907 147461962 -70575196 + AluSg/x SINE Alu 80 135 -175 1759 146 30 7 chr3 147461962 147462264 -70574894 + AluSx SINE Alu 1 309 -3 1380 132 0 23 chr3 147462264 147462427 -70574731 + AluSg/x SINE Alu 135 293 -17 748 153 16 0 chr3 147462543 147462667 -70574491 - FLAM_C SINE Alu -16 127 2 2302 111 0 0 chr3 147462678 147462976 -70574182 - AluSx SINE Alu -14 298 1 999 166 0 0 chr3 147463128 147463310 -70573848 - AluSg/x SINE Alu 0 313 132 2206 109 10 3 chr3 147463310 147463614 -70573544 - AluSx SINE Alu -6 306 1 251 288 0 0 chr3 147463614 147463680 -70573478 + LTR16B LTR ERVL 395 460 -4 552 209 126 52 chr3 147463923 147463991 -70573167 - MIR SINE MIR -10 252 190 2131 112 0 11 chr3 147463991 147464301 -70572857 + AluSx SINE Alu 1 307 0 552 209 126 52 chr3 147464301 147464461 -70572697 - MIR SINE MIR -72 190 6 248 268 160 7 chr3 147464472 147464617 -70572541 - MIR SINE MIR -21 187 21 345 294 85 26 chr3 147465143 147465296 -70571862 - L2 LINE L2 -4 3268 3107 199 170 21 21 chr3 147465826 147465873 -70571285 + L2 LINE L2 3263 3309 -4 834 184 20 56 chr3 147466083 147466252 -70570906 - MER5A DNA MER1_type 0 189 26 1901 166 69 64 chr3 147466252 147466733 -70570425 + MER31A LTR ERV1 1 483 -2 834 184 20 56 chr3 147466733 147466759 -70570399 - MER5A DNA MER1_type -163 26 1 267 232 48 74 chr3 147466813 147466853 -70570305 + MIR SINE MIR 48 88 -174 1490 145 74 0 chr3 147466853 147467095 -70570063 - AluJb SINE Alu -10 302 43 267 232 48 74 chr3 147467095 147467227 -70569931 + MIR SINE MIR 88 257 -5 2096 121 3 16 chr3 147469025 147469330 -70567828 - AluSq SINE Alu -12 301 1 405 239 61 80 chr3 147469349 147469409 -70567749 - L1ME LINE L1 -451 5670 5610 1869 117 45 0 chr3 147469409 147469673 -70567485 - AluSx SINE Alu -14 298 23 1539 130 120 29 chr3 147469675 147469951 -70567207 - AluJo SINE Alu -11 301 1 405 239 61 80 chr3 147469951 147470050 -70567108 - L1ME LINE L1 -512 5609 5511 2394 95 0 0 chr3 147470231 147470537 -70566621 - AluY SINE Alu -5 306 1 1920 140 0 0 chr3 147470539 147470811 -70566347 - AluSx SINE Alu -18 294 23 833 139 8 0 chr3 147470813 147470942 -70566216 - AluJb SINE Alu -6 306 177 198 0 0 0 chr3 147470953 147470975 -70566183 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 840 127 8 0 chr3 147470978 147471096 -70566062 - FLAM_C SINE Alu -24 119 1 2136 123 0 7 chr3 147471360 147471668 -70565490 - AluY SINE Alu -5 306 1 1919 158 0 19 chr3 147471668 147471983 -70565175 - AluJo SINE Alu -2 310 1 321 258 0 0 chr3 147471984 147472050 -70565108 - MLT1J LTR MaLR -445 66 1 1912 98 0 110 chr3 147472452 147472778 -70564380 + AluSg SINE Alu 1 290 -20 1009 163 4 116 chr3 147472799 147472879 -70564279 + MER115 DNA AcHobo 487 574 -119 2049 139 0 3 chr3 147472879 147473180 -70563978 - AluSx SINE Alu -12 300 1 1009 163 4 116 chr3 147473180 147473332 -70563826 + MER115 DNA AcHobo 574 693 0 1428 179 0 4 chr3 147474280 147474514 -70562644 - AluJo SINE Alu -79 233 1 1091 196 5 27 chr3 147474623 147474676 -70562482 + AluJb SINE Alu 86 139 -173 1944 146 13 10 chr3 147474676 147474978 -70562180 + AluSx SINE Alu 1 303 -9 1091 196 5 27 chr3 147474978 147475144 -70562014 + AluJb SINE Alu 139 300 -12 200 35 35 0 chr3 147475187 147475216 -70561942 + (CA)n Simple_repeat Simple_repeat 2 31 0 1006 168 6 6 chr3 147475244 147475434 -70561724 + AluJo SINE Alu 118 307 0 504 196 158 13 chr3 147475436 147475594 -70561564 - MIR SINE MIR -76 186 6 258 268 130 8 chr3 147475605 147475749 -70561409 - MIR SINE MIR -21 187 21 345 294 85 26 chr3 147476274 147476427 -70560731 - L2 LINE L2 -4 3268 3107 199 170 21 21 chr3 147476957 147477004 -70560154 + L2 LINE L2 3263 3309 -4 834 184 20 56 chr3 147477214 147477383 -70559775 - MER5A DNA MER1_type 0 189 26 1901 166 69 64 chr3 147477383 147477864 -70559294 + MER31A LTR ERV1 1 483 -2 834 184 20 56 chr3 147477864 147477890 -70559268 - MER5A DNA MER1_type -163 26 1 267 232 48 74 chr3 147477944 147477984 -70559174 + MIR SINE MIR 48 88 -174 1490 145 74 0 chr3 147477984 147478226 -70558932 - AluJb SINE Alu -10 302 43 267 232 48 74 chr3 147478226 147478358 -70558800 + MIR SINE MIR 88 257 -5 2096 121 3 16 chr3 147480157 147480462 -70556696 - AluSq SINE Alu -12 301 1 424 239 61 80 chr3 147480481 147480541 -70556617 - L1ME LINE L1 -451 5670 5610 1869 117 45 0 chr3 147480541 147480805 -70556353 - AluSx SINE Alu -14 298 23 1539 130 120 29 chr3 147480807 147481083 -70556075 - AluJo SINE Alu -11 301 1 424 239 61 80 chr3 147481083 147481182 -70555976 - L1ME LINE L1 -512 5609 5511 2394 95 0 0 chr3 147481363 147481669 -70555489 - AluY SINE Alu -5 306 1 1803 148 0 4 chr3 147481671 147481934 -70555224 - AluSx SINE Alu -18 294 33 1104 233 106 64 chr3 147481961 147482442 -70554716 - L2 LINE L2 -667 2647 2147 221 320 38 75 chr3 147483222 147483541 -70553617 - L2 LINE L2 -1558 1756 1450 2026 139 3 7 chr3 147483606 147483909 -70553249 - AluJb SINE Alu -10 302 1 256 264 18 45 chr3 147483975 147484085 -70553073 - L1ME LINE L1 -480 5641 5535 25 0 0 0 chr3 147484253 147484278 -70552880 + AT_rich Low_complexity Low_complexity 1 25 0 517 267 112 10 chr3 147485705 147485911 -70551247 + L1ME4a LINE L1 -554 4294966968 -6612 5360 237 98 44 chr3 147486094 147487759 -70549399 + L1ME4a LINE L1 33 1607 -4775 1341 216 50 27 chr3 147487759 147488056 -70549102 + AluJb SINE Alu 1 304 -8 5360 237 98 44 chr3 147488056 147488067 -70549091 + L1ME4a LINE L1 1607 1616 -4766 1744 195 3 0 chr3 147488067 147488364 -70548794 + AluJb SINE Alu 1 298 -14 5360 237 98 44 chr3 147488364 147488747 -70548411 + L1ME4a LINE L1 1616 1977 -4405 2507 45 3 0 chr3 147488747 147489060 -70548098 + AluY SINE Alu 1 311 0 5360 237 98 44 chr3 147489060 147490204 -70546954 + L1ME4a LINE L1 1977 3171 -3211 11699 193 71 29 chr3 147490228 147492638 -70544520 + L1P5 LINE L1 3 2308 -4559 2260 99 0 0 chr3 147492638 147492922 -70544236 + AluSx SINE Alu 1 284 -28 225 0 0 0 chr3 147492925 147492950 -70544208 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 11699 193 71 29 chr3 147492950 147493597 -70543561 + L1P5 LINE L1 2309 2927 -3940 1539 184 58 7 chr3 147493597 147493891 -70543267 + AluJo SINE Alu 1 309 -3 11699 193 71 29 chr3 147493891 147494769 -70542389 + L1P5 LINE L1 2927 3766 -3101 2199 80 0 0 chr3 147494769 147495043 -70542115 - AluY SINE Alu -2 309 36 11699 193 71 29 chr3 147495043 147497903 -70539255 + L1P5 LINE L1 3766 6207 -660 2048 126 0 32 chr3 147497903 147498213 -70538945 + AluSx SINE Alu 1 300 -12 492 158 85 0 chr3 147498230 147498312 -70538846 + MER70A LTR ERVL 384 472 0 1495 216 32 5 chr3 147498312 147498682 -70538476 + L1ME4a LINE L1 3849 4228 -2154 388 263 91 0 chr3 147498804 147498903 -70538255 - MER119 DNA MER1_type -471 112 5 2458 77 3 0 chr3 147498958 147499268 -70537890 - AluY SINE Alu 0 311 1 304 244 172 69 chr3 147499268 147499616 -70537542 + L1ME4a LINE L1 5913 6296 -61 214 356 81 31 chr3 147500159 147500319 -70536839 + L2 LINE L2 3103 3270 -2 1866 163 0 7 chr3 147500870 147501164 -70535994 + AluJb SINE Alu 1 292 -20 22 0 0 0 chr3 147501596 147501618 -70535540 + AT_rich Low_complexity Low_complexity 1 22 0 462 284 123 13 chr3 147501773 147501928 -70535230 - L2 LINE L2 0 3272 3101 2301 70 3 14 chr3 147502470 147502756 -70534402 + AluY SINE Alu 16 298 -13 1740 154 21 4 chr3 147502893 147503209 -70533949 - AluJb SINE Alu 0 321 1 395 218 0 11 chr3 147503326 147503413 -70533745 + MIR SINE MIR 75 160 -102 2226 125 0 0 chr3 147503416 147503712 -70533446 + AluSq SINE Alu 1 296 -17 709 197 113 0 chr3 147503712 147503854 -70533304 + AluJb SINE Alu 134 291 -21 893 174 46 15 chr3 147503854 147504049 -70533109 - MIR SINE MIR -57 205 5 666 301 68 27 chr3 147504050 147504419 -70532739 - L2 LINE L2 -900 2414 2031 2363 100 3 0 chr3 147504583 147504892 -70532266 - AluSx SINE Alu -2 310 1 698 117 31 47 chr3 147505363 147505491 -70531667 + FLAM_C SINE Alu 9 134 -9 1061 239 47 85 chr3 147505653 147506075 -70531083 - MLT1J LTR MaLR -6 505 100 2428 84 0 3 chr3 147506125 147506424 -70530734 - AluSg SINE Alu -12 298 1 188 167 0 0 chr3 147506465 147506495 -70530663 + L2 LINE L2 3262 3291 -22 1251 150 127 41 chr3 147507047 147507314 -70529844 - AluJo SINE Alu -9 303 14 986 201 0 0 chr3 147507518 147507687 -70529471 - AluSg/x SINE Alu -18 292 124 2413 67 7 0 chr3 147507868 147508168 -70528990 - AluY SINE Alu -9 302 1 1108 148 4 116 chr3 147508287 147508537 -70528621 - AluJb SINE Alu -7 305 84 1028 172 123 5 chr3 147508862 147509066 -70528092 - AluJo SINE Alu -9 303 76 303 265 43 103 chr3 147509231 147509484 -70527674 + L2 LINE L2 2410 2647 -667 2095 112 0 0 chr3 147509511 147509787 -70527371 + AluSx SINE Alu 33 308 -4 540 241 38 6 chr3 147509966 147510124 -70527034 - L1ME3A LINE L1 -208 5962 5800 2082 132 0 13 chr3 147510163 147510466 -70526692 - AluSx SINE Alu -13 299 1 1954 149 10 0 chr3 147510546 147510834 -70526324 + AluSx SINE Alu 6 296 -16 291 262 10 19 chr3 147510835 147510938 -70526220 + MLT1B LTR MaLR 74 175 -215 2245 97 0 3 chr3 147510947 147511237 -70525921 + AluSc SINE Alu 6 294 -15 1947 142 13 10 chr3 147511247 147511549 -70525609 + AluSx SINE Alu 1 303 -9 887 199 12 6 chr3 147511549 147511715 -70525443 + AluJb SINE Alu 134 300 -12 367 228 101 6 chr3 147511818 147511976 -70525182 + AluJo SINE Alu 122 294 -8 771 127 17 0 chr3 147512179 147512297 -70524861 + FLAM_C SINE Alu 3 122 -21 198 0 0 0 chr3 147512297 147512319 -70524839 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 847 142 8 0 chr3 147512330 147512464 -70524694 + AluJb SINE Alu 177 311 -1 685 340 99 14 chr3 147512493 147512996 -70524162 - L2 LINE L2 -955 2359 1814 274 329 21 43 chr3 147513169 147513309 -70523849 + MIR3 SINE MIR 69 205 -3 210 314 100 0 chr3 147513368 147513438 -70523720 + L2 LINE L2 3191 3267 -5 234 336 42 47 chr3 147513776 147513990 -70523168 + L2 LINE L2 2261 2473 -841 973 198 32 68 chr3 147514108 147514196 -70522962 - MER8 DNA MER2_type 0 239 149 2453 80 0 0 chr3 147514196 147514497 -70522661 + AluY SINE Alu 1 301 -10 973 198 32 68 chr3 147514497 147514656 -70522502 - MER8 DNA MER2_type -90 149 1 241 196 93 21 chr3 147514834 147514931 -70522227 - LTR7 LTR ERV1 -11 439 336 1426 177 58 31 chr3 147515157 147515451 -70521707 + AluJb SINE Alu 1 302 -10 2177 112 0 14 chr3 147515479 147515775 -70521383 + AluSx SINE Alu 1 292 -20 264 232 258 14 chr3 147515881 147516027 -70521131 + MIR SINE MIR 38 216 -46 1405 139 0 0 chr3 147516063 147516257 -70520901 + AluSx SINE Alu 11 204 -108 970 148 7 7 chr3 147516257 147516406 -70520752 + AluSg/x SINE Alu 122 270 -40 34 0 0 0 chr3 147516680 147516714 -70520444 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr3 147517009 147517030 -70520128 + AT_rich Low_complexity Low_complexity 1 21 0 979 127 22 0 chr3 147517030 147517164 -70519994 + AluSg1 SINE Alu 1 137 -172 2020 149 0 3 chr3 147517305 147517607 -70519551 - AluSx SINE Alu -11 301 1 384 251 90 116 chr3 147517863 147518415 -70518743 - L2 LINE L2 0 3313 2782 2115 136 0 0 chr3 147518415 147518709 -70518449 + AluSx SINE Alu 1 294 -18 384 251 90 116 chr3 147518709 147518754 -70518404 - L2 LINE L2 -531 2782 2737 970 182 0 0 chr3 147518771 147518930 -70518228 + AluJb SINE Alu 131 289 -23 330 240 0 131 chr3 147519066 147519197 -70517961 - L2 LINE L2 -1219 2095 1993 1865 154 3 43 chr3 147519197 147519522 -70517636 + AluJb SINE Alu 1 312 0 330 240 0 131 chr3 147519522 147519573 -70517585 - L2 LINE L2 -1321 1993 1937 1493 238 44 51 chr3 147519885 147520251 -70516907 + LTR16B LTR ERVL 1 365 -99 2384 88 0 7 chr3 147520251 147520558 -70516600 - AluSx SINE Alu -7 305 1 1493 238 44 51 chr3 147520558 147520619 -70516539 + LTR16B LTR ERVL 365 425 -39 1021 304 46 42 chr3 147520641 147521144 -70516014 + HERV16 LTR ERVL 3 507 -4489 1952 144 29 10 chr3 147521462 147521597 -70515561 + AluJb SINE Alu 1 132 -180 2291 113 3 6 chr3 147521597 147521908 -70515250 + AluSg SINE Alu 1 310 0 1952 144 29 10 chr3 147521908 147522078 -70515080 + AluJb SINE Alu 132 312 0 882 265 80 75 chr3 147522134 147522528 -70514630 + HERV16 LTR ERVL 4505 4903 -93 1334 132 123 134 chr3 147522528 147522998 -70514160 + MER4C LTR ERV1 1 465 0 882 265 80 75 chr3 147522998 147523093 -70514065 + HERV16 LTR ERVL 4903 4996 0 1062 258 68 63 chr3 147523093 147523120 -70514038 + LTR16B LTR ERVL 1 26 -438 2492 79 0 0 chr3 147523120 147523425 -70513733 + AluY SINE Alu 1 305 -6 1062 258 68 63 chr3 147523425 147523855 -70513303 + LTR16B LTR ERVL 26 460 -4 588 274 59 27 chr3 147524509 147524695 -70512463 + MLT1J2 LTR MaLR 259 450 0 2175 89 6 54 chr3 147525105 147525420 -70511738 - AluSx SINE Alu -12 300 1 340 301 35 35 chr3 147525456 147525599 -70511559 - MIR SINE MIR -52 210 68 240 253 58 11 chr3 147525944 147526031 -70511127 + LTR16B LTR ERVL 244 334 -130 2037 122 35 0 chr3 147526105 147526393 -70510765 - AluSx SINE Alu -14 298 1 281 148 19 0 chr3 147526394 147526448 -70510710 + Zaphod DNA AcHobo 3880 3934 -97 181 353 88 0 chr3 147526679 147526781 -70510377 - L2 LINE L2 -23 3290 3180 810 214 40 0 chr3 147527365 147527538 -70509620 - AluJo SINE Alu 0 312 133 1841 185 3 0 chr3 147527611 147527903 -70509255 + AluJb SINE Alu 1 293 -19 313 237 123 18 chr3 147527916 147528030 -70509128 - AluJo SINE Alu -172 130 5 1523 230 43 50 chr3 147528851 147529035 -70508123 + MLT1C LTR MaLR 6 190 -277 2381 107 0 0 chr3 147529035 147529344 -70507814 + AluSc SINE Alu 1 309 0 1523 230 43 50 chr3 147529344 147529620 -70507538 + MLT1C LTR MaLR 190 463 -4 1655 167 20 10 chr3 147530333 147530633 -70506525 - AluJo SINE Alu -9 303 1 2042 135 10 13 chr3 147530633 147530944 -70506214 - AluSx SINE Alu -1 311 1 2181 92 14 7 chr3 147530992 147531287 -70505871 - AluSp SINE Alu -16 297 1 990 161 0 0 chr3 147532207 147532356 -70504802 - AluSq/x SINE Alu -164 149 1 1749 204 52 25 chr3 147533216 147533657 -70503501 + MLT1D LTR MaLR 53 505 0 2237 104 14 0 chr3 147533770 147534067 -70503091 + AluSx SINE Alu 1 301 -11 311 270 40 10 chr3 147534888 147534988 -70502170 - HAL1 LINE L1 -2111 396 294 2081 127 7 0 chr3 147535300 147535584 -70501574 + AluSx SINE Alu 1 286 -26 2114 118 3 0 chr3 147535878 147536165 -70500993 - AluSx SINE Alu -22 290 3 1750 165 0 14 chr3 147536173 147536493 -70500665 - AluJb SINE Alu 0 316 1 1597 206 127 2 chr3 147536787 147537205 -70499953 - Charlie4a DNA MER1_type -1 507 38 223 379 19 10 chr3 147537399 147537502 -70499656 + MIR SINE MIR 32 135 -73 374 206 191 15 chr3 147538550 147538686 -70498472 - HAL1b LINE L1 0 1348 1189 2407 84 0 0 chr3 147539070 147539368 -70497790 - AluSg SINE Alu -12 298 1 1684 170 13 31 chr3 147539370 147539687 -70497471 - AluJb SINE Alu -1 311 1 1095 198 12 87 chr3 147539816 147539847 -70497311 - L1MC4 LINE L1 0 8042 8010 2194 138 0 0 chr3 147539847 147540143 -70497015 + AluSx SINE Alu 3 298 -14 1095 198 12 87 chr3 147540143 147540455 -70496703 - L1MC4 LINE L1 -32 8010 7725 216 158 0 0 chr3 147540539 147540577 -70496581 + (TA)n Simple_repeat Simple_repeat 2 39 0 519 219 61 0 chr3 147540588 147540702 -70496456 - L1MC4 LINE L1 -370 7672 7552 2352 82 3 7 chr3 147540707 147541010 -70496148 + AluY SINE Alu 1 302 -9 2265 93 0 0 chr3 147541028 147541318 -70495840 + AluSg1 SINE Alu 1 290 -19 520 252 64 13 chr3 147541319 147541535 -70495623 - L1MB7 LINE L1 -8 6171 5939 * 1646 224 37 19 chr3 147541527 147541937 -70495221 - L1ME1 LINE L1 -272 6130 5714 2502 66 0 10 chr3 147541937 147542242 -70494916 - AluY SINE Alu -9 302 1 2167 125 0 0 chr3 147542246 147542543 -70494615 - AluSx SINE Alu -15 297 1 1042 158 0 0 chr3 147542547 147542699 -70494459 - AluJb SINE Alu -23 289 138 1469 134 103 52 chr3 147542704 147542988 -70494170 - L1ME1 LINE L1 -696 5718 5450 2040 142 6 6 chr3 147542988 147543299 -70493859 - AluSx SINE Alu -1 311 1 1621 158 37 30 chr3 147543301 147543599 -70493559 - AluJo SINE Alu -12 300 1 1544 192 10 14 chr3 147543608 147543900 -70493258 - AluJb SINE Alu -21 291 1 1469 134 103 52 chr3 147543900 147544045 -70493113 - L1ME1 LINE L1 -971 5443 5259 1811 97 89 4 chr3 147544161 147544418 -70492740 + AluSx SINE Alu 18 296 -16 3000 205 27 52 chr3 147544418 147544749 -70492409 - L1ME1 LINE L1 -1734 4648 4310 2513 59 3 3 chr3 147544749 147545052 -70492106 + AluY SINE Alu 1 303 -8 3000 205 27 52 chr3 147545052 147545541 -70491617 - L1ME1 LINE L1 -2072 4310 3849 494 158 85 0 chr3 147545541 147545623 -70491535 - MER70A LTR ERVL 0 472 384 11859 184 72 26 chr3 147545625 147545640 -70491518 - L1P5 LINE L1 -647 6220 6207 2027 126 0 32 chr3 147545640 147545950 -70491208 - AluSx SINE Alu -12 300 1 11859 184 72 26 chr3 147545950 147548810 -70488348 - L1P5 LINE L1 -660 6207 3479 2269 69 0 0 chr3 147548810 147549084 -70488074 + AluY SINE Alu 36 309 -2 11859 184 72 26 chr3 147549084 147549959 -70487199 - L1P5 LINE L1 -3388 3479 2645 1550 182 57 7 chr3 147549959 147550256 -70486902 - AluJo SINE Alu 0 312 1 11859 184 72 26 chr3 147550256 147550903 -70486255 - L1P5 LINE L1 -4222 2645 2029 225 0 0 0 chr3 147550903 147550928 -70486230 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2238 99 0 0 chr3 147550931 147551215 -70485943 - AluSx SINE Alu -28 284 1 11859 184 72 26 chr3 147551215 147553629 -70483529 - L1P5 LINE L1 -4839 2028 3 5479 238 92 44 chr3 147553653 147554797 -70482361 - L1ME1 LINE L1 -3211 3171 2084 2477 45 3 0 chr3 147554797 147555110 -70482048 - AluY SINE Alu 0 311 1 5479 238 92 44 chr3 147555110 147555493 -70481665 - L1ME1 LINE L1 -4298 2084 1721 1726 195 3 0 chr3 147555493 147555790 -70481368 - AluJb SINE Alu -14 298 1 5479 238 92 44 chr3 147555790 147555801 -70481357 - L1ME1 LINE L1 -4661 1721 1712 1334 212 50 27 chr3 147555801 147556098 -70481060 - AluJb SINE Alu -8 304 1 5479 238 92 44 chr3 147556098 147557763 -70479395 - L1ME1 LINE L1 -4670 1712 33 230 273 0 83 chr3 147557809 147557930 -70479228 - L1MEc LINE L1 -4554 2584 2474 526 267 112 10 chr3 147557946 147558152 -70479006 - L1MEc LINE L1 -6612 247 21 25 0 0 0 chr3 147559581 147559606 -70477552 + AT_rich Low_complexity Low_complexity 1 25 0 257 264 18 45 chr3 147559774 147559884 -70477274 + L1ME LINE L1 5535 5641 -480 2006 139 3 7 chr3 147559950 147560253 -70476905 + AluJb SINE Alu 1 302 -10 290 310 41 78 chr3 147560318 147560637 -70476521 + L2 LINE L2 1450 1756 -1558 210 327 40 33 chr3 147560741 147560891 -70476267 + L2 LINE L2 1975 2125 -1189 1242 233 106 64 chr3 147561417 147561898 -70475260 + L2 LINE L2 2147 2647 -667 2082 112 0 0 chr3 147561925 147562201 -70474957 + AluSx SINE Alu 33 308 -4 1023 254 57 104 chr3 147562380 147562577 -70474581 - L1ME3A LINE L1 -208 6242 6037 1787 159 3 17 chr3 147562577 147562878 -70474280 - AluSx SINE Alu -13 299 3 1023 254 57 104 chr3 147562878 147563295 -70473863 - L1ME3A LINE L1 -413 6037 5657 458 255 111 0 chr3 147563284 147563437 -70473721 - L1ME3A LINE L1 -3364 3062 2893 * 1649 176 20 13 chr3 147563482 147563788 -70473370 - AluJo SINE Alu -4 308 1 872 168 95 0 chr3 147563798 147563935 -70473223 - AluJo SINE Alu -16 286 137 1430 144 5 0 chr3 147563938 147564160 -70472998 - AluJb SINE Alu -3 309 87 647 218 8 23 chr3 147564168 147564301 -70472857 - AluJo SINE Alu -170 132 2 9985 181 86 66 chr3 147564305 147565114 -70472044 - L1MCa LINE L1 -3523 2903 2112 284 108 0 0 chr3 147565114 147565151 -70472007 - U2 snRNA snRNA -151 37 1 9985 181 86 66 chr3 147565151 147565670 -70471488 - L1MCa LINE L1 -4314 2112 1605 735 196 8 8 chr3 147565670 147565803 -70471355 - FLAM_A SINE Alu 0 133 1 9985 181 86 66 chr3 147565803 147566285 -70470873 - L1MCa LINE L1 -4821 1605 1134 757 221 0 0 chr3 147566285 147566416 -70470742 - FLAM_A SINE Alu -2 131 1 9985 181 86 66 chr3 147566416 147567392 -70469766 - L1MCa LINE L1 -5292 1134 4 227 264 0 0 chr3 147567391 147567444 -70469714 - L1MC/D LINE L1 -2314 5728 5676 * 257 226 123 0 chr3 147567629 147567710 -70469448 + L1MC/D LINE L1 5694 5783 -542 1547 156 64 28 chr3 147568156 147568438 -70468720 - AluJo SINE Alu -11 301 10 340 248 179 0 chr3 147568499 147568616 -70468542 + MIR SINE MIR 110 247 -15 21 0 0 0 chr3 147569196 147569217 -70467941 + AT_rich Low_complexity Low_complexity 1 21 0 896 236 281 32 chr3 147569329 147569462 -70467696 + HsTC2 DNA Tc2 28 127 -1771 1775 178 7 0 chr3 147569462 147569754 -70467404 - AluJb SINE Alu -18 294 1 1753 175 3 26 chr3 147569754 147570062 -70467096 - AluJo SINE Alu -10 302 1 896 236 281 32 chr3 147570062 147570483 -70466675 + HsTC2 DNA Tc2 126 1894 -4 277 238 164 25 chr3 147570548 147570670 -70466488 + L2 LINE L2 2452 2590 -724 363 232 63 0 chr3 147570671 147570766 -70466392 + HsTC2 DNA Tc2 1799 1899 0 351 249 121 59 chr3 147570773 147571046 -70466112 - L1ME4a LINE L1 -2 6119 5830 3240 165 41 20 chr3 147571229 147571840 -70465318 - L1MB7 LINE L1 -9 6175 5552 26 50 0 0 chr3 147571939 147571979 -70465179 + AT_rich Low_complexity Low_complexity 1 40 0 1173 243 109 32 chr3 147571991 147572395 -70464763 - L2 LINE L2 -12 3301 2867 331 241 83 19 chr3 147572375 147572483 -70464675 - L2 LINE L2 -569 2745 2631 * 206 253 139 13 chr3 147572821 147572900 -70464258 - L2 LINE L2 -278 3035 2947 242 284 45 0 chr3 147574328 147574416 -70462742 - L1MC4 LINE L1 -1335 6707 6616 242 200 0 71 chr3 147574415 147574485 -70462673 - L1MCa LINE L1 -4356 2070 2006 * 246 229 0 62 chr3 147574468 147574564 -70462594 - L1MC4 LINE L1 -1339 6703 6614 * 280 69 42 83 chr3 147574526 147574598 -70462560 + L1MCa LINE L1 1995 2063 -4363 543 151 0 78 chr3 147574629 147575015 -70462143 + (TATATG)n Simple_repeat Simple_repeat 1 356 0 231 275 100 0 chr3 147575023 147575103 -70462055 - L1MC4 LINE L1 -1340 6702 6615 230 299 0 0 chr3 147575074 147575141 -70462017 - L1MC4 LINE L1 -1339 6703 6637 * 209 364 0 0 chr3 147575141 147575207 -70461951 + (CA)n Simple_repeat Simple_repeat 1 66 0 339 275 0 0 chr3 147575214 147575334 -70461824 + (TA)n Simple_repeat Simple_repeat 2 121 0 277 274 160 9 chr3 147575813 147575919 -70461239 + L2 LINE L2 3151 3272 0 4371 135 45 13 chr3 147576857 147577570 -70459588 - L1M4c LINE L1 -5618 766 31 1429 69 11 21 chr3 147577658 147577896 -70459262 - L1PA2 LINE L1 0 6155 5968 1535 219 18 3 chr3 147577947 147578230 -70458928 + AluJo SINE Alu 2 288 -14 328 294 99 49 chr3 147578233 147578618 -70458540 - L1M4 LINE L1 -1935 4211 3808 22 0 0 0 chr3 147578734 147578756 -70458402 + AT_rich Low_complexity Low_complexity 1 22 0 2086 134 0 0 chr3 147578756 147579048 -70458110 - AluSq SINE Alu -21 292 1 1057 174 15 15 chr3 147579061 147579257 -70457901 - MLT1B LTR MaLR 0 390 195 1285 191 0 0 chr3 147579295 147579515 -70457643 - AluJo SINE Alu -8 304 85 2313 83 0 13 chr3 147579527 147579829 -70457329 - AluY SINE Alu -13 298 1 2237 96 0 3 chr3 147579839 147580130 -70457028 - AluSc SINE Alu -14 295 6 305 272 0 10 chr3 147580139 147580242 -70456916 - MLT1B LTR MaLR -215 175 74 1938 149 10 0 chr3 147580243 147580531 -70456627 - AluSx SINE Alu -16 296 6 2175 130 10 0 chr3 147580611 147580918 -70456240 + AluSx SINE Alu 1 310 -2 673 117 160 10 chr3 147581642 147581781 -70455377 + L1MA7 LINE L1 6120 6269 -22 829 313 96 21 chr3 147581872 147582572 -70454586 + HAL1b LINE L1 95 846 -502 2265 99 3 0 chr3 147582838 147583147 -70454011 + AluSp SINE Alu 1 310 0 873 129 0 0 chr3 147583379 147583503 -70453655 - AluSg/x SINE Alu -13 299 176 538 328 104 43 chr3 147583683 147584125 -70453033 + L1MC4a LINE L1 2576 3060 -3086 2324 103 3 3 chr3 147584125 147584436 -70452722 + AluSx SINE Alu 1 311 -1 538 328 104 43 chr3 147584436 147584548 -70452610 + L1MC4a LINE L1 3060 3164 -2982 1921 161 0 7 chr3 147584662 147584960 -70452198 + AluJo SINE Alu 1 296 -16 1648 190 17 7 chr3 147585094 147585227 -70451931 + AluJb SINE Alu 1 131 -181 2374 78 7 0 chr3 147585227 147585521 -70451637 + AluSp SINE Alu 1 296 -17 1648 190 17 7 chr3 147585521 147585677 -70451481 + AluJb SINE Alu 131 293 -19 2268 251 127 86 chr3 147585902 147586504 -70450654 + L1MC4a LINE L1 3800 4376 -1770 1426 186 57 14 chr3 147586504 147586784 -70450374 - AluJo SINE Alu -20 292 1 2268 251 127 86 chr3 147586784 147586822 -70450336 + L1MC4a LINE L1 4376 4411 -1735 888 138 0 0 chr3 147586822 147586945 -70450213 + FLAM_C SINE Alu 1 123 -20 2268 251 127 86 chr3 147586945 147587291 -70449867 + L1MC4a LINE L1 4411 4741 -1405 2017 163 68 0 chr3 147587291 147587617 -70449541 - MER7A DNA MER2_type 0 346 1 2268 251 127 86 chr3 147587617 147588842 -70448316 + L1MC4a LINE L1 4741 5403 -743 1418 192 207 72 chr3 147588894 147589539 -70447619 + L1MC4 LINE L1 6345 6902 -1140 1503 205 76 0 chr3 147589539 147589827 -70447331 + AluSx SINE Alu 1 310 -2 1418 192 207 72 chr3 147589827 147590400 -70446758 + L1MC4 LINE L1 6902 7396 -646 2079 80 38 10 chr3 147590400 147590688 -70446470 + AluSc SINE Alu 1 296 -13 1746 173 14 0 chr3 147590697 147590981 -70446177 + AluJo SINE Alu 5 292 -20 1418 192 207 72 chr3 147590981 147591051 -70446107 + L1MC4 LINE L1 7402 7819 -223 1916 158 3 3 chr3 147591082 147591385 -70445773 + AluJo SINE Alu 1 303 -9 1959 141 3 13 chr3 147591451 147591763 -70445395 - AluSx SINE Alu -3 309 1 645 226 39 19 chr3 147591763 147591918 -70445240 - L1M4b LINE L1 -6691 168 11 1974 148 0 19 chr3 147593230 147593548 -70443610 - AluSx SINE Alu 0 312 1 2220 116 0 7 chr3 147594472 147594775 -70442383 + AluSx SINE Alu 1 301 -11 2231 103 3 0 chr3 147595314 147595606 -70441552 + AluSg SINE Alu 1 293 -17 1779 136 56 0 chr3 147595777 147596064 -70441094 - AluSx SINE Alu -9 303 1 2761 142 51 0 chr3 147596362 147596813 -70440345 + Tigger1 DNA MER2_type 1 474 -1944 * 5535 128 89 12 chr3 147596810 147597769 -70439389 + Tigger1 DNA MER2_type 1386 2417 -1 2006 148 3 0 chr3 147597862 147598153 -70439005 + AluSp SINE Alu 1 292 -21 29 0 0 0 chr3 147598197 147598226 -70438932 + AT_rich Low_complexity Low_complexity 1 29 0 237 85 75 38 chr3 147598304 147598410 -70438748 + (TA)n Simple_repeat Simple_repeat 1 110 0 2009 144 0 7 chr3 147598456 147598761 -70438397 + AluSx SINE Alu 1 303 -9 2431 203 39 80 chr3 147598801 147599564 -70437594 - L1MC4 LINE L1 -370 7672 6941 207 0 0 0 chr3 147599573 147599596 -70437562 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 614 165 10 0 chr3 147599618 147599715 -70437443 + AluSg/x SINE Alu 84 181 -129 708 60 0 0 chr3 147599718 147599801 -70437357 - AluSg/x SINE Alu -73 236 154 899 147 0 0 chr3 147599915 147600044 -70437114 - FLAM_C SINE Alu -2 131 3 5677 155 42 9 chr3 147600823 147602034 -70435124 - L1MA4 LINE L1 -5 7714 6459 8641 193 39 52 chr3 147602061 147603028 -70434130 - L1MA4 LINE L1 -1744 5821 4843 2231 109 0 0 chr3 147603028 147603321 -70433837 - AluSq SINE Alu -19 294 2 8641 193 39 52 chr3 147603321 147603653 -70433505 - L1MA4 LINE L1 -2722 4843 4508 186 71 0 0 chr3 147603653 147603681 -70433477 + (TTG)n Simple_repeat Simple_repeat 3 30 0 8641 193 39 52 chr3 147603681 147604418 -70432740 - L1MA4 LINE L1 -3057 4508 3811 2157 105 0 0 chr3 147604418 147604703 -70432455 - AluSc SINE Alu -24 285 1 8641 193 39 52 chr3 147604703 147605165 -70431993 - L1MA4 LINE L1 -3754 3811 3344 2099 145 0 0 chr3 147605188 147605492 -70431666 + AluSx SINE Alu 5 308 -4 206 32 32 0 chr3 147605674 147605705 -70431453 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 801 164 0 8 chr3 147605705 147605827 -70431331 - FLAM_C SINE Alu -22 121 1 424 227 60 13 chr3 147605829 147605979 -70431179 - L1MA4 LINE L1 -4388 3177 3021 3049 100 62 105 chr3 147605980 147606608 -70430550 - LTR14B LTR ERVK 0 608 8 2483 258 65 21 chr3 147606610 147607609 -70429549 - L1M2 LINE L1 -4225 2624 1582 549 299 68 80 chr3 147607980 147608468 -70428690 - L1M2 LINE L1 -5797 982 501 1968 145 0 3 chr3 147608963 147609259 -70427899 + AluSx SINE Alu 3 297 -15 1977 103 57 7 chr3 147609261 147609543 -70427615 + AluSx SINE Alu 1 296 -16 374 274 204 10 chr3 147609812 147610013 -70427145 + L2 LINE L2 3032 3271 -42 2447 80 0 0 chr3 147610033 147610332 -70426826 - AluY SINE Alu -12 299 1 1997 126 77 28 chr3 147610872 147611186 -70425972 + MLT1B LTR MaLR 1 337 -53 2006 114 61 0 chr3 147611186 147611466 -70425692 + AluSc SINE Alu 1 297 -12 1997 126 77 28 chr3 147611466 147611515 -70425643 + MLT1B LTR MaLR 337 382 -8 348 213 25 38 chr3 147611520 147611600 -70425558 - L1MC5 LINE L1 -72 7889 7811 1973 86 124 0 chr3 147612081 147612348 -70424810 - AluSp SINE Alu -13 300 1 489 233 25 83 chr3 147612784 147612846 -70424312 - MIR SINE MIR -36 172 108 2325 73 3 3 chr3 147612846 147613135 -70424023 - AluSx SINE Alu -23 289 1 489 233 25 83 chr3 147613135 147613241 -70423917 - MIR SINE MIR -100 108 8 2328 88 0 7 chr3 147613949 147614245 -70422913 - AluSc SINE Alu -15 294 1 1278 191 16 107 chr3 147614250 147614569 -70422589 - AluJb SINE Alu -8 294 5 622 253 72 21 chr3 147615988 147616182 -70420976 + MIR SINE MIR 2 205 -57 2277 93 0 0 chr3 147616549 147616838 -70420320 - AluSx SINE Alu -21 291 3 1950 127 11 0 chr3 147617030 147617305 -70419853 - AluSx SINE Alu -24 288 11 817 173 47 0 chr3 147617387 147617514 -70419644 - FLAM_C SINE Alu 0 133 1 187 280 20 0 chr3 147617974 147618024 -70419134 + L2 LINE L2 2999 3049 -223 215 318 95 0 chr3 147618160 147618223 -70418935 + L2 LINE L2 3204 3272 0 199 321 0 0 chr3 147618583 147618639 -70418519 - MIR SINE MIR -11 251 196 1862 127 69 7 chr3 147618742 147619033 -70418125 + AluJb SINE Alu 1 309 -3 1921 161 0 7 chr3 147619038 147619336 -70417822 + AluJo SINE Alu 1 296 -16 1648 190 17 7 chr3 147619470 147619603 -70417555 + AluJb SINE Alu 1 131 -181 2361 82 7 0 chr3 147619603 147619897 -70417261 + AluSp SINE Alu 1 296 -17 1648 190 17 7 chr3 147619897 147620053 -70417105 + AluJb SINE Alu 131 293 -19 2268 251 128 85 chr3 147620278 147620880 -70416278 + L1MC4a LINE L1 3800 4375 -1771 1333 196 57 18 chr3 147620880 147621161 -70415997 - AluJo SINE Alu -20 292 1 2268 251 128 85 chr3 147621161 147621200 -70415958 + L1MC4a LINE L1 4375 4411 -1735 793 117 62 8 chr3 147621200 147621328 -70415830 + AluJo SINE Alu 2 136 -176 2268 251 128 85 chr3 147621328 147621665 -70415493 + L1MC4a LINE L1 4411 4732 -1414 2017 163 68 0 chr3 147621665 147621991 -70415167 - MER7A DNA MER2_type 0 346 1 2268 251 128 85 chr3 147621991 147623216 -70413942 + L1MC4a LINE L1 4732 5403 -743 3361 194 205 71 chr3 147623268 147623913 -70413245 + L1MC4 LINE L1 6345 6902 -1140 1503 205 76 0 chr3 147623913 147624201 -70412957 + AluSx SINE Alu 1 310 -2 3361 194 205 71 chr3 147624201 147624774 -70412384 + L1MC4 LINE L1 6902 7397 -645 2079 80 38 10 chr3 147624774 147625062 -70412096 + AluSc SINE Alu 1 296 -13 1731 175 11 0 chr3 147625071 147625356 -70411802 + AluJo SINE Alu 5 292 -20 3361 194 205 71 chr3 147625356 147625426 -70411732 + L1MC4 LINE L1 7403 7819 -223 231 209 119 67 chr3 147625432 147625457 -70411701 + L1MC4 LINE L1 7902 7924 -118 1916 158 3 3 chr3 147625457 147625760 -70411398 + AluJo SINE Alu 1 303 -9 231 209 119 67 chr3 147625760 147625826 -70411332 + L1MC4 LINE L1 7924 8005 -37 1926 162 3 3 chr3 147625826 147626135 -70411023 - AluSx SINE Alu -3 309 1 231 209 119 67 chr3 147626135 147626176 -70410982 + L1MC4 LINE L1 8005 8042 0 1819 171 6 22 chr3 147626732 147627048 -70410110 - AluJb SINE Alu -1 311 1 412 247 21 0 chr3 147627191 147627288 -70409870 + L2 LINE L2 3139 3237 -35 1616 106 4 47 chr3 147627576 147627832 -70409326 + AluSg SINE Alu 1 245 -65 356 110 134 85 chr3 147627832 147627914 -70409244 + AluSc SINE Alu 204 289 -10 4314 233 39 66 chr3 147627914 147628906 -70408252 - L1MB4 LINE L1 -2 6178 5160 2003 129 0 42 chr3 147628906 147629217 -70407941 - AluSx SINE Alu -14 298 1 4314 233 39 66 chr3 147629217 147630713 -70406445 - L1MB4 LINE L1 -1020 5160 3773 537 186 71 64 chr3 147630715 147630855 -70406303 - L1MC1 LINE L1 -5 6328 6188 * 3677 213 45 7 chr3 147630847 147630866 -70406292 - L1M4 LINE L1 -1742 4902 4885 2054 120 25 103 chr3 147630866 147631273 -70405885 - THE1C LTR MaLR 0 375 1 3677 213 45 7 chr3 147631273 147632104 -70405054 - L1M4 LINE L1 -1759 4885 4020 3928 219 113 40 chr3 147632104 147633021 -70404137 - L1M4 LINE L1 -4483 2163 1315 2030 134 0 25 chr3 147633021 147633342 -70403816 + AluSq SINE Alu 1 313 0 3928 219 113 40 chr3 147633342 147633633 -70403525 - L1M4 LINE L1 -5331 1315 1047 754 212 0 0 chr3 147633633 147633765 -70403393 - FLAM_C SINE Alu -1 132 1 3928 219 113 40 chr3 147633765 147634309 -70402849 - L1M4 LINE L1 -5599 1047 350 2167 122 10 0 chr3 147634413 147634709 -70402449 - AluSx SINE Alu -13 299 1 758 146 9 0 chr3 147634710 147634820 -70402338 - FLAM_A SINE Alu -9 133 23 1994 125 26 7 chr3 147634871 147635176 -70401982 - AluSx SINE Alu -1 311 1 953 198 90 56 chr3 147635178 147635344 -70401814 - L1M4 LINE L1 -2190 3956 3797 2311 80 3 0 chr3 147635344 147635631 -70401527 - AluY SINE Alu -23 288 1 953 198 90 56 chr3 147635631 147635787 -70401371 - L1M4 LINE L1 -2349 3797 3623 354 291 176 12 chr3 147635815 147635980 -70401178 - MIR SINE MIR -17 245 54 1261 254 116 46 chr3 147638610 147639111 -70398047 - MLT1H LTR MaLR 0 549 14 365 214 111 8 chr3 147640136 147640262 -70396896 - L1MC4 LINE L1 0 8042 7904 34 72 0 0 chr3 147640263 147640332 -70396826 + AT_rich Low_complexity Low_complexity 1 69 0 181 135 39 0 chr3 147640342 147640394 -70396764 + (TA)n Simple_repeat Simple_repeat 1 54 0 1387 225 133 59 chr3 147640396 147640824 -70396334 - L1MC4 LINE L1 -124 7918 7523 2134 104 29 0 chr3 147640824 147641104 -70396054 + AluSx SINE Alu 1 288 -24 1387 225 133 59 chr3 147641104 147641292 -70395866 - L1MC4 LINE L1 -519 7523 7350 2229 80 0 0 chr3 147641292 147641567 -70395591 - AluSc SINE Alu -2 307 33 1387 225 133 59 chr3 147641567 147642164 -70394994 - L1MC4 LINE L1 -692 7350 6311 237 65 0 0 chr3 147642551 147642582 -70394576 + (T)n Simple_repeat Simple_repeat 1 31 0 300 274 0 55 chr3 147643404 147643477 -70393681 - MIR SINE MIR -173 89 21 228 327 70 32 chr3 147643608 147643764 -70393394 - L3 LINE CR1 -43 1534 1373 1829 143 11 4 chr3 147644343 147644622 -70392536 + AluSx SINE Alu 1 281 -31 1648 147 50 21 chr3 147645045 147645324 -70391834 - AluJb SINE Alu -25 287 1 1997 126 77 28 chr3 147648464 147648778 -70388380 + MLT1B LTR MaLR 1 337 -53 2006 114 61 0 chr3 147648778 147649058 -70388100 + AluSc SINE Alu 1 297 -12 1997 126 77 28 chr3 147649058 147649107 -70388051 + MLT1B LTR MaLR 337 382 -8 348 213 25 38 chr3 147649112 147649192 -70387966 - L1MC5 LINE L1 -72 7889 7811 1973 86 124 0 chr3 147649673 147649940 -70387218 - AluSp SINE Alu -13 300 1 483 219 22 93 chr3 147650376 147650438 -70386720 - MIR SINE MIR -36 172 122 2325 73 3 3 chr3 147650438 147650727 -70386431 - AluSx SINE Alu -23 289 1 483 219 22 93 chr3 147650727 147650802 -70386356 - MIR SINE MIR -86 122 43 2274 95 0 7 chr3 147651541 147651837 -70385321 - AluSc SINE Alu -15 294 1 1278 191 16 107 chr3 147651842 147652161 -70384997 - AluJb SINE Alu -8 294 5 622 253 72 21 chr3 147653580 147653774 -70383384 + MIR SINE MIR 2 205 -57 2277 93 0 0 chr3 147654141 147654430 -70382728 - AluSx SINE Alu -21 291 3 1818 134 11 7 chr3 147654622 147654899 -70382259 - AluSx SINE Alu -24 288 11 812 182 8 0 chr3 147654982 147655114 -70382044 - FLAM_C SINE Alu 0 133 1 257 264 18 45 chr3 147655180 147655290 -70381868 - L1ME LINE L1 -480 5641 5535 25 0 0 0 chr3 147655458 147655483 -70381675 + AT_rich Low_complexity Low_complexity 1 25 0 518 272 112 10 chr3 147656914 147657120 -70380038 + L1M4b LINE L1 -554 4294966968 -6612 225 260 82 68 chr3 147657136 147657282 -70379876 + L1M4b LINE L1 1899 2046 -4517 5479 238 97 43 chr3 147657303 147658968 -70378190 + L1M4b LINE L1 33 1607 -4775 1334 212 50 27 chr3 147658968 147659265 -70377893 + AluJb SINE Alu 1 304 -8 5479 238 97 43 chr3 147659265 147659276 -70377882 + L1M4b LINE L1 1607 1616 -4766 1726 195 3 0 chr3 147659276 147659573 -70377585 + AluJb SINE Alu 1 298 -14 5479 238 97 43 chr3 147659573 147659956 -70377202 + L1M4b LINE L1 1616 1977 -4405 2477 45 3 0 chr3 147659956 147660269 -70376889 + AluY SINE Alu 1 311 0 5479 238 97 43 chr3 147660269 147661413 -70375745 + L1M4b LINE L1 1977 3171 -3211 11747 194 71 28 chr3 147661437 147663851 -70373307 + L1P5 LINE L1 3 2311 -4556 2238 99 0 0 chr3 147663851 147664135 -70373023 + AluSx SINE Alu 1 284 -28 225 0 0 0 chr3 147664138 147664163 -70372995 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 11747 194 71 28 chr3 147664163 147664810 -70372348 + L1P5 LINE L1 2312 2930 -3937 1550 182 57 7 chr3 147664810 147665107 -70372051 + AluJo SINE Alu 1 312 0 11747 194 71 28 chr3 147665107 147665982 -70371176 + L1P5 LINE L1 2930 3766 -3101 2269 69 0 0 chr3 147665982 147666256 -70370902 - AluY SINE Alu -2 309 36 11747 194 71 28 chr3 147666256 147669113 -70368045 + L1P5 LINE L1 3766 6207 -660 1944 136 0 32 chr3 147669113 147669423 -70367735 + AluSx SINE Alu 1 300 -12 11747 194 71 28 chr3 147669423 147669438 -70367720 + L1P5 LINE L1 6207 6220 -647 479 171 85 0 chr3 147669440 147669522 -70367636 + MER70A LTR ERVL 384 472 0 813 273 41 4 chr3 147669522 147669764 -70367394 + L1M4b LINE L1 3849 4099 -2283 1997 126 77 28 chr3 147670140 147670454 -70366704 + MLT1B LTR MaLR 1 337 -53 1962 115 65 0 chr3 147670454 147670733 -70366425 + AluSc SINE Alu 1 297 -12 1997 126 77 28 chr3 147670733 147670782 -70366376 + MLT1B LTR MaLR 337 382 -8 348 213 25 38 chr3 147670787 147670867 -70366291 - L1MC5 LINE L1 -72 7889 7811 1973 86 124 0 chr3 147671348 147671615 -70365543 - AluSp SINE Alu -13 300 1 483 219 22 93 chr3 147672051 147672113 -70365045 - MIR SINE MIR -36 172 122 2325 73 3 3 chr3 147672113 147672402 -70364756 - AluSx SINE Alu -23 289 1 483 219 22 93 chr3 147672402 147672477 -70364681 - MIR SINE MIR -86 122 43 2328 88 0 7 chr3 147673216 147673512 -70363646 - AluSc SINE Alu -15 294 1 1278 191 16 107 chr3 147673517 147673836 -70363322 - AluJb SINE Alu -8 294 5 622 253 72 21 chr3 147675255 147675449 -70361709 + MIR SINE MIR 2 205 -57 2277 93 0 0 chr3 147675816 147676105 -70361053 - AluSx SINE Alu -21 291 3 1950 127 11 0 chr3 147676297 147676572 -70360586 - AluSx SINE Alu -24 288 11 841 165 47 0 chr3 147676655 147676782 -70360376 - FLAM_C SINE Alu 0 133 1 187 280 20 0 chr3 147677242 147677292 -70359866 + L2 LINE L2 2999 3049 -223 215 318 95 0 chr3 147677428 147677491 -70359667 + L2 LINE L2 3204 3272 0 199 321 0 0 chr3 147677851 147677907 -70359251 - MIR SINE MIR -11 251 196 1862 127 69 7 chr3 147678010 147678301 -70358857 + AluJb SINE Alu 1 309 -3 2189 119 0 3 chr3 147678306 147678599 -70358559 + AluSx SINE Alu 1 292 -20 346 186 0 0 chr3 147678599 147678669 -70358489 + L1MC4 LINE L1 7750 7819 -223 231 209 119 67 chr3 147678675 147678700 -70358458 + L1MC4 LINE L1 7902 7924 -118 1916 158 3 3 chr3 147678700 147679003 -70358155 + AluJo SINE Alu 1 303 -9 231 209 119 67 chr3 147679003 147679069 -70358089 + L1MC4 LINE L1 7924 8005 -37 2032 149 3 3 chr3 147679069 147679378 -70357780 - AluSx SINE Alu -3 309 1 231 209 119 67 chr3 147679378 147679419 -70357739 + L1MC4 LINE L1 8005 8042 0 1819 171 6 22 chr3 147679975 147680291 -70356867 - AluJb SINE Alu -1 311 1 412 247 21 0 chr3 147680434 147680531 -70356627 + L2 LINE L2 3139 3237 -35 1616 106 4 47 chr3 147680819 147681075 -70356083 + AluSg SINE Alu 1 245 -65 356 110 134 85 chr3 147681075 147681157 -70356001 + AluSc SINE Alu 204 289 -10 4314 233 39 66 chr3 147681157 147682149 -70355009 - L1MB4 LINE L1 -2 6178 5160 2003 129 0 42 chr3 147682149 147682460 -70354698 - AluSx SINE Alu -14 298 1 4314 233 39 66 chr3 147682460 147683956 -70353202 - L1MB4 LINE L1 -1020 5160 3773 537 186 71 64 chr3 147683958 147684098 -70353060 - L1MC1 LINE L1 -5 6328 6188 * 3677 213 45 7 chr3 147684090 147684109 -70353049 - L1M4 LINE L1 -1742 4902 4885 2054 120 25 103 chr3 147684109 147684516 -70352642 - THE1C LTR MaLR 0 375 1 3677 213 45 7 chr3 147684516 147685347 -70351811 - L1M4 LINE L1 -1759 4885 4020 3928 219 113 40 chr3 147685347 147686264 -70350894 - L1M4 LINE L1 -4483 2163 1315 2030 134 0 25 chr3 147686264 147686585 -70350573 + AluSq SINE Alu 1 313 0 3928 219 113 40 chr3 147686585 147686876 -70350282 - L1M4 LINE L1 -5331 1315 1047 754 212 0 0 chr3 147686876 147687008 -70350150 - FLAM_C SINE Alu -1 132 1 3928 219 113 40 chr3 147687008 147687552 -70349606 - L1M4 LINE L1 -5599 1047 350 2167 122 10 0 chr3 147687656 147687952 -70349206 - AluSx SINE Alu -13 299 1 758 146 9 0 chr3 147687953 147688063 -70349095 - FLAM_A SINE Alu -9 133 23 1994 125 26 7 chr3 147688114 147688419 -70348739 - AluSx SINE Alu -1 311 1 953 198 90 56 chr3 147688421 147688587 -70348571 - L1M4 LINE L1 -2190 3956 3797 2311 80 3 0 chr3 147688587 147688874 -70348284 - AluY SINE Alu -23 288 1 953 198 90 56 chr3 147688874 147689030 -70348128 - L1M4 LINE L1 -2349 3797 3623 354 291 176 12 chr3 147689058 147689223 -70347935 - MIR SINE MIR -17 245 54 1088 258 116 46 chr3 147691852 147692353 -70344805 - MLT1H LTR MaLR 0 549 14 305 262 103 0 chr3 147693378 147693504 -70343654 - L1MC4 LINE L1 0 8042 7904 34 72 0 0 chr3 147693505 147693574 -70343584 + AT_rich Low_complexity Low_complexity 1 69 0 181 135 39 0 chr3 147693584 147693636 -70343522 + (TA)n Simple_repeat Simple_repeat 1 54 0 254 225 63 36 chr3 147693645 147693756 -70343402 - L1MC4 LINE L1 -130 7912 7799 * 1272 227 160 76 chr3 147693731 147694066 -70343092 - L1MC4a LINE L1 -282 7526 7221 2134 104 29 0 chr3 147694066 147694346 -70342812 + AluSx SINE Alu 1 288 -24 1272 227 160 76 chr3 147694346 147694534 -70342624 - L1MC4a LINE L1 -587 7221 7050 2227 80 0 0 chr3 147694534 147694809 -70342349 - AluSc SINE Alu -2 307 33 1272 227 160 76 chr3 147694809 147695381 -70341777 - L1MC4a LINE L1 -758 7050 6337 237 65 0 0 chr3 147695793 147695824 -70341334 + (T)n Simple_repeat Simple_repeat 1 31 0 295 274 0 55 chr3 147696646 147696719 -70340439 - MIR SINE MIR -173 89 21 240 327 70 32 chr3 147696850 147697006 -70340152 - L3 LINE CR1 -43 1534 1373 1828 143 11 4 chr3 147697585 147697864 -70339294 + AluSx SINE Alu 1 281 -31 1661 147 50 21 chr3 147698287 147698566 -70338592 - AluJb SINE Alu -25 287 1 1819 129 77 28 chr3 147701708 147702022 -70335136 + MLT1B LTR MaLR 1 337 -53 2011 114 61 0 chr3 147702022 147702302 -70334856 + AluSc SINE Alu 1 297 -12 1819 129 77 28 chr3 147702302 147702351 -70334807 + MLT1B LTR MaLR 337 382 -8 312 213 25 38 chr3 147702356 147702436 -70334722 - L1MC5 LINE L1 -72 7889 7811 1972 86 124 0 chr3 147702917 147703184 -70333974 - AluSp SINE Alu -13 300 1 486 219 22 93 chr3 147703620 147703682 -70333476 - MIR SINE MIR -36 172 122 2308 73 3 3 chr3 147703682 147703971 -70333187 - AluSx SINE Alu -23 289 1 486 219 22 93 chr3 147703971 147704046 -70333112 - MIR SINE MIR -86 122 43 2326 88 0 7 chr3 147704785 147705081 -70332077 - AluSc SINE Alu -15 294 1 1172 191 16 107 chr3 147705086 147705405 -70331753 - AluJb SINE Alu -8 294 5 630 253 72 21 chr3 147706824 147707018 -70330140 + MIR SINE MIR 2 205 -57 2266 93 0 0 chr3 147707385 147707674 -70329484 - AluSx SINE Alu -21 291 3 1959 127 11 0 chr3 147707866 147708141 -70329017 - AluSx SINE Alu -24 288 11 788 165 47 0 chr3 147708224 147708351 -70328807 - FLAM_C SINE Alu 0 133 1 189 280 20 0 chr3 147708811 147708861 -70328297 + L2 LINE L2 2999 3049 -223 217 318 95 0 chr3 147708997 147709060 -70328098 + L2 LINE L2 3204 3272 0 203 321 0 0 chr3 147709420 147709476 -70327682 - MIR SINE MIR -11 251 196 185 299 13 26 chr3 147709482 147709559 -70327599 + MIR SINE MIR 185 260 -2 1872 127 69 7 chr3 147709579 147709870 -70327288 + AluJb SINE Alu 1 309 -3 2317 119 0 3 chr3 147709875 147710186 -70326972 + AluSx SINE Alu 1 310 -2 550 324 31 59 chr3 147710503 147710759 -70326399 - MIR SINE MIR -13 249 1 1498 187 22 18 chr3 147711195 147711468 -70325690 - AluJo SINE Alu -36 276 3 1873 256 57 94 chr3 147712479 147712634 -70324524 + L1M4b LINE L1 11 170 -6689 1873 106 56 7 chr3 147712634 147712918 -70324240 + AluSx SINE Alu 1 298 -14 1873 256 57 94 chr3 147712918 147713723 -70323435 + L1M4b LINE L1 170 936 -5923 359 178 56 11 chr3 147713740 147713830 -70323328 + L1MA9 LINE L1 6185 6278 -34 26 0 0 0 chr3 147714179 147714205 -70322953 + AT_rich Low_complexity Low_complexity 1 26 0 630 214 105 86 chr3 147714739 147714914 -70322244 + L1M4b LINE L1 1205 1390 -5469 2048 143 7 0 chr3 147714914 147715222 -70321936 - AluJb SINE Alu -2 310 1 630 214 105 86 chr3 147715222 147715350 -70321808 + L1M4b LINE L1 1390 1514 -5345 1586 169 58 23 chr3 147715354 147715702 -70321456 + MER47A DNA MER2_type 7 366 0 1624 257 43 21 chr3 147715703 147716369 -70320789 + L1M4b LINE L1 1516 2196 -4763 501 202 0 0 chr3 147716369 147716458 -70320700 - FRAM SINE Alu -78 98 10 388 271 79 0 chr3 147716459 147716599 -70320559 + L1M4b LINE L1 2411 2561 -4577 2588 236 72 44 chr3 147716765 147717061 -70320097 + L1M4b LINE L1 2481 2767 -4190 1967 135 0 30 chr3 147717061 147717364 -70319794 - AluSx SINE Alu -18 294 1 2588 236 72 44 chr3 147717364 147717833 -70319325 + L1M4b LINE L1 2767 3221 -3736 2369 110 3 0 chr3 147717833 147718142 -70319016 + AluSx SINE Alu 1 310 -2 2588 236 72 44 chr3 147718142 147718733 -70318425 + L1M4b LINE L1 3221 3844 -3113 595 173 47 0 chr3 147718820 147718947 -70318211 - FLAM_A SINE Alu 0 133 1 196 239 22 0 chr3 147718992 147719038 -70318120 + L2 LINE L2 3257 3303 -10 1634 158 51 4 chr3 147719172 147719426 -70317732 - AluJo SINE Alu -46 266 1 1201 147 0 11 chr3 147719502 147719692 -70317466 - AluSg/x SINE Alu -4 308 121 2524 65 0 3 chr3 147719698 147720005 -70317153 - AluY SINE Alu -5 306 1 2018 138 10 3 chr3 147720846 147721143 -70316015 - AluJb SINE Alu -13 299 1 1715 190 7 3 chr3 147721342 147721631 -70315527 - AluJo SINE Alu -22 290 1 1615 142 94 0 chr3 147722299 147722566 -70314592 - AluSx SINE Alu -20 292 1 874 279 165 35 chr3 147722907 147723302 -70313856 + L2 LINE L2 1442 1887 -1427 2197 81 11 0 chr3 147723432 147723705 -70313453 - AluY SINE Alu -15 296 21 227 250 40 13 chr3 147723965 147724041 -70313117 - L1MC/D LINE L1 -1879 5929 5852 630 297 14 3 chr3 147724044 147724266 -70312892 - L1M1 LINE L1 -518 5787 5560 34 62 0 12 chr3 147724346 147724386 -70312772 + AT_rich Low_complexity Low_complexity 1 40 -39 1620 184 3 7 chr3 147724386 147724669 -70312489 - AluJo SINE Alu -30 282 1 34 62 0 12 chr3 147724669 147724708 -70312450 + AT_rich Low_complexity Low_complexity 40 79 0 2240 111 0 10 chr3 147724710 147725016 -70312142 - AluSq SINE Alu -10 303 1 231 200 0 31 chr3 147725051 147725116 -70312042 - L1P LINE L1 -795 5360 5298 873 141 0 21 chr3 147725247 147725389 -70311769 + FLAM_C SINE Alu 5 143 0 314 292 102 35 chr3 147725460 147725686 -70311472 - L1M4 LINE L1 -1082 5064 4824 1806 144 30 20 chr3 147726519 147726817 -70310341 - AluJo SINE Alu -11 301 1 2246 132 0 0 chr3 147726830 147727140 -70310018 - AluSx SINE Alu -2 310 1 186 401 116 0 chr3 147728099 147728246 -70308912 + L3 LINE CR1 40 203 -1374 300 283 77 15 chr3 147728272 147728389 -70308769 - MER5A DNA MER1_type -54 135 2 439 309 194 18 chr3 147728390 147728668 -70308490 + L3 LINE CR1 209 535 -1042 499 270 90 25 chr3 147728868 147729068 -70308090 + MIR SINE MIR 20 232 -30 208 333 122 19 chr3 147729081 147729237 -70307921 + L2 LINE L2 3125 3296 -17 210 274 123 0 chr3 147729393 147729466 -70307692 + L3 LINE CR1 1044 1125 -452 510 222 41 0 chr3 147730128 147730258 -70306900 - MER2 DNA MER2_type -96 143 1 514 305 19 5 chr3 147731299 147731512 -70305646 + L1MC4a LINE L1 5641 5856 -1952 748 168 0 40 chr3 147731599 147731748 -70305410 - FLAM_C SINE Alu 0 143 1 22 0 0 0 chr3 147732192 147732214 -70304944 + AT_rich Low_complexity Low_complexity 1 22 0 5066 152 88 34 chr3 147732539 147732807 -70304351 + Tigger3b DNA MER2_type 14 266 -2762 402 21 0 0 chr3 147732807 147732854 -70304304 + (CTATA)n Simple_repeat Simple_repeat 1 47 0 5066 152 88 34 chr3 147732854 147733124 -70304034 + Tigger3b DNA MER2_type 266 520 -2508 25725 35 7 0 chr3 147733124 147737030 -70300128 - L1PA4 LINE L1 -8 6147 2219 5066 152 88 34 chr3 147737030 147737092 -70300066 + Tigger3b DNA MER2_type 520 577 -2451 2266 102 3 0 chr3 147737092 147737386 -70299772 + AluSp SINE Alu 1 295 -18 5066 152 88 34 chr3 147737386 147737938 -70299220 + Tigger3b DNA MER2_type 577 1231 0 1998 114 7 7 chr3 147738445 147738768 -70298390 + AluSg SINE Alu 1 323 0 379 0 0 0 chr3 147738726 147738821 -70298337 + (TAAA)n Simple_repeat Simple_repeat 2 96 0 790 335 82 17 chr3 147739142 147739545 -70297613 + MER115 DNA AcHobo 62 490 -203 1975 122 6 62 chr3 147739545 147739865 -70297293 - AluSq SINE Alu -11 302 1 2079 139 13 3 chr3 147740067 147740370 -70296788 + AluSx SINE Alu 1 306 -6 651 155 16 39 chr3 147740471 147740600 -70296558 - FLAM_C SINE Alu -17 126 1 720 213 0 77 chr3 147740687 147740870 -70296288 - FAM SINE Alu -5 170 2 1490 152 76 32 chr3 147740888 147741165 -70295993 - AluSx SINE Alu -16 296 8 2137 115 13 23 chr3 147741971 147742276 -70294882 + AluSx SINE Alu 2 303 -9 21 36 0 0 chr3 147743366 147743394 -70293764 + AT_rich Low_complexity Low_complexity 1 28 0 1820 120 8 4 chr3 147743955 147744221 -70292937 - AluSx SINE Alu -2 310 44 2136 115 7 16 chr3 147744430 147744734 -70292424 - AluSx SINE Alu -11 301 1 230 259 35 0 chr3 147744742 147744800 -70292358 - MIR SINE MIR -41 221 162 999 254 118 67 chr3 147744808 147744952 -70292206 + L1MC4a LINE L1 5548 5683 -2125 2162 112 7 0 chr3 147744952 147745239 -70291919 - AluSc SINE Alu -20 289 1 999 254 118 67 chr3 147745239 147745689 -70291469 + L1MC4a LINE L1 5683 6172 -1636 203 173 19 0 chr3 147745759 147745811 -70291347 + (TATG)n Simple_repeat Simple_repeat 4 56 0 317 140 0 0 chr3 147745812 147745862 -70291296 - L1MC4 LINE L1 -1340 6702 6653 226 221 151 12 chr3 147745883 147745969 -70291189 + L1MC4 LINE L1 6890 6987 -1055 13210 149 50 38 chr3 147746107 147746227 -70290931 + Tigger2 DNA MER2_type 1 118 -2600 2315 68 7 16 chr3 147746227 147746536 -70290622 + AluY SINE Alu 1 306 -5 13210 149 50 38 chr3 147746536 147746758 -70290400 + Tigger2 DNA MER2_type 118 336 -2382 1889 150 10 3 chr3 147746758 147746888 -70290270 + AluSx SINE Alu 1 129 -183 2259 65 31 7 chr3 147746888 147747181 -70289977 + AluY SINE Alu 1 300 -11 1889 150 10 3 chr3 147747181 147747344 -70289814 + AluSx SINE Alu 129 296 -16 13210 149 50 38 chr3 147747344 147748954 -70288204 + Tigger2 DNA MER2_type 336 1925 -793 1685 141 7 7 chr3 147748954 147749224 -70287934 + AluSx SINE Alu 1 270 -42 2185 105 0 0 chr3 147749226 147749521 -70287637 + AluSq SINE Alu 1 295 -18 13210 149 50 38 chr3 147749521 147750185 -70286973 + Tigger2 DNA MER2_type 1925 2658 -60 611 130 70 0 chr3 147750185 147750285 -70286873 - U6 snRNA snRNA 0 107 1 13210 149 50 38 chr3 147750285 147750345 -70286813 + Tigger2 DNA MER2_type 2658 2716 -2 240 216 0 0 chr3 147750348 147750399 -70286759 - L1MC5 LINE L1 -209 7752 7702 1936 261 86 29 chr3 147750401 147750627 -70286531 - L1M4c LINE L1 -4299 2526 2314 1525 108 31 0 chr3 147750627 147750850 -70286308 + MER30 DNA MER1_type 1 230 0 1936 261 86 29 chr3 147750850 147750894 -70286264 - L1M4c LINE L1 -4511 2314 2274 429 66 0 0 chr3 147750894 147750955 -70286203 + (CA)n Simple_repeat Simple_repeat 2 62 0 1936 261 86 29 chr3 147750955 147751004 -70286154 - L1M4c LINE L1 -4551 2274 2229 2171 139 0 0 chr3 147751004 147751305 -70285853 - AluSx SINE Alu -11 301 1 1936 261 86 29 chr3 147751305 147751378 -70285780 - L1M4c LINE L1 -4596 2229 2162 2189 113 3 0 chr3 147751378 147751671 -70285487 - AluSg SINE Alu -16 294 1 1936 261 86 29 chr3 147751671 147752585 -70284573 - L1M4c LINE L1 -4663 2162 1021 1916 120 10 37 chr3 147752596 147752895 -70284263 - AluSx SINE Alu -10 302 12 319 275 36 60 chr3 147753000 147753167 -70283991 - L1M4c LINE L1 -6333 209 47 367 318 32 45 chr3 147753233 147753387 -70283771 - MIR SINE MIR -93 169 18 25 0 0 0 chr3 147753402 147753427 -70283731 + AT_rich Low_complexity Low_complexity 1 25 0 367 308 96 31 chr3 147754180 147754566 -70282592 - L1MC/D LINE L1 -2024 5784 5374 267 262 75 0 chr3 147754679 147754786 -70282372 - L1MC/D LINE L1 -914 5232 5118 210 324 0 19 chr3 147754852 147754960 -70282198 + CT-rich Low_complexity Low_complexity 2 107 0 734 258 109 18 chr3 147755305 147755534 -70281624 - MIR SINE MIR -12 250 1 1992 136 0 3 chr3 147755765 147756066 -70281092 - AluSg SINE Alu -10 300 1 2061 119 14 0 chr3 147756068 147756354 -70280804 - AluSx SINE Alu -22 290 1 2198 115 3 0 chr3 147756383 147756679 -70280479 - AluSx SINE Alu -15 297 1 513 316 142 51 chr3 147758041 147758330 -70278828 + L2 LINE L2 2688 2949 -364 1930 124 58 7 chr3 147758330 147758621 -70278537 - AluSx SINE Alu -4 308 3 513 316 142 51 chr3 147758621 147758899 -70278259 + L2 LINE L2 2949 3313 0 364 270 37 86 chr3 147758954 147759013 -70278145 - MIR3 SINE MIR -8 200 140 2265 89 6 16 chr3 147759013 147759328 -70277830 + AluSx SINE Alu 1 312 0 364 270 37 86 chr3 147759328 147759431 -70277727 - MIR3 SINE MIR -68 140 46 453 19 0 0 chr3 147759489 147759543 -70277615 + (CA)n Simple_repeat Simple_repeat 2 55 0 21185 34 6 0 chr3 147759777 147762478 -70274680 - L1P LINE L1 -1210 4936 2219 2757 150 100 22 chr3 147762493 147762540 -70274618 + Tigger3(Golem) DNA MER2_type 2383 2425 -604 2266 102 3 0 chr3 147762540 147762834 -70274324 + AluSp SINE Alu 1 295 -18 2757 150 100 22 chr3 147762834 147763386 -70273772 + Tigger3(Golem) DNA MER2_type 2425 3029 0 2406 73 3 3 chr3 147763893 147764193 -70272965 + AluY SINE Alu 1 300 -11 411 233 164 6 chr3 147764194 147764353 -70272805 + MER115 DNA AcHobo 510 693 0 214 394 30 0 chr3 147764896 147765028 -70272130 - L2 LINE L2 0 3313 3178 1410 172 103 8 chr3 147765198 147765459 -70271699 + AluJo SINE Alu 1 286 -26 284 302 42 0 chr3 147765467 147765563 -70271595 - MIR SINE MIR -13 249 150 367 366 77 49 chr3 147765977 147766214 -70270944 - L2 LINE L2 -112 3160 2910 2264 104 0 0 chr3 147766214 147766511 -70270647 + AluSx SINE Alu 1 297 -15 367 366 77 49 chr3 147766511 147766598 -70270560 - L2 LINE L2 -362 2910 2827 524 266 182 15 chr3 147766793 147766996 -70270162 - MIR SINE MIR -14 248 12 2147 116 0 3 chr3 147767033 147767327 -70269831 - AluSc SINE Alu -16 293 1 2270 114 0 13 chr3 147767525 147767840 -70269318 + AluSx SINE Alu 1 311 -1 846 327 130 16 chr3 147767869 147768429 -70268729 - L2 LINE L2 -955 2359 1736 340 331 21 41 chr3 147768540 147768685 -70268473 + MIR3 SINE MIR 64 205 -3 287 343 0 0 chr3 147768741 147768814 -70268344 + L2 LINE L2 3236 3308 -5 2302 99 0 26 chr3 147769185 147769498 -70267660 - AluSq SINE Alu -8 305 1 729 208 71 47 chr3 147770321 147770461 -70266697 - MIR SINE MIR 0 262 112 2613 58 0 0 chr3 147770461 147770771 -70266387 + AluY SINE Alu 1 310 -1 729 208 71 47 chr3 147770771 147770885 -70266273 - MIR SINE MIR -150 112 2 2146 146 3 0 chr3 147770956 147771265 -70265893 + AluSx SINE Alu 1 310 -2 2072 131 10 7 chr3 147771274 147771572 -70265586 + AluSx SINE Alu 1 299 -13 1624 177 32 0 chr3 147771954 147772236 -70264922 + AluJo SINE Alu 1 291 -21 1862 163 3 3 chr3 147772507 147772789 -70264369 - AluJo SINE Alu -30 282 1 2392 90 0 10 chr3 147772843 147773155 -70264003 + AluSg SINE Alu 1 309 -1 481 147 0 74 chr3 147773443 147773538 -70263620 - AluJb SINE Alu -138 174 87 1070 199 28 0 chr3 147773925 147774136 -70263022 - MER58A DNA MER1_type -4 220 4 183 262 24 0 chr3 147774185 147774227 -70262931 + L2 LINE L2 3211 3253 -19 471 308 57 0 chr3 147774949 147775108 -70262050 - MIR SINE MIR -73 189 22 2294 106 0 0 chr3 147775152 147775453 -70261705 - AluSg SINE Alu -8 302 2 23 54 0 0 chr3 147775728 147775765 -70261393 + AT_rich Low_complexity Low_complexity 1 37 0 591 131 0 0 chr3 147775765 147775849 -70261309 - FLAM_C SINE Alu -25 118 35 1301 105 89 11 chr3 147776107 147776298 -70260860 - AluSg/x SINE Alu -22 290 85 2216 130 0 0 chr3 147776299 147776607 -70260551 - AluSx SINE Alu -4 308 1 2194 116 0 3 chr3 147776615 147776918 -70260240 - AluSg SINE Alu -8 302 1 2589 72 0 0 chr3 147778156 147778462 -70258696 - AluSc SINE Alu -3 306 1 748 257 129 35 chr3 147778883 147779272 -70257886 + L1ME4a LINE L1 5561 6007 -114 2209 119 0 0 chr3 147779272 147779583 -70257575 + AluY SINE Alu 1 311 0 748 257 129 35 chr3 147779583 147779683 -70257475 + L1ME4a LINE L1 6007 6096 -25 25 65 0 0 chr3 147779724 147779770 -70257388 + AT_rich Low_complexity Low_complexity 1 46 0 1181 136 0 11 chr3 147780129 147780306 -70256852 + AluSg/x SINE Alu 118 292 -18 2187 138 0 7 chr3 147780378 147780683 -70256475 - AluSx SINE Alu -9 303 1 2239 100 0 20 chr3 147780694 147780993 -70256165 - AluSc SINE Alu -16 293 1 1452 149 62 59 chr3 147781294 147781428 -70255730 + AluJb SINE Alu 14 146 -166 1936 87 47 96 chr3 147781428 147781750 -70255408 + AluSq SINE Alu 1 306 -7 1452 149 62 59 chr3 147781750 147781903 -70255255 + AluJb SINE Alu 146 302 -10 2127 113 7 17 chr3 147782129 147782431 -70254727 + AluSx SINE Alu 1 299 -13 1862 143 7 0 chr3 147782716 147782988 -70254170 - AluSx SINE Alu -36 276 3 1982 119 3 19 chr3 147782996 147783308 -70253850 - AluY SINE Alu -4 307 1 2418 77 7 0 chr3 147783308 147783607 -70253551 - AluSg SINE Alu -9 301 1 497 311 108 75 chr3 147784039 147784466 -70252692 - L1MEd LINE L1 -5357 762 322 2146 109 0 40 chr3 147784735 147784904 -70252254 - AluSq SINE Alu -19 294 141 1739 141 28 14 chr3 147784904 147785195 -70251963 - AluSx SINE Alu -17 295 1 2146 109 0 40 chr3 147785195 147785327 -70251831 - AluSq SINE Alu -172 141 5 940 159 4 116 chr3 147786239 147786391 -70250767 - MER115 DNA AcHobo 0 693 574 2040 139 0 3 chr3 147786391 147786692 -70250466 + AluSx SINE Alu 1 300 -12 940 159 4 116 chr3 147786692 147786772 -70250386 - MER115 DNA AcHobo -119 574 487 2029 101 0 104 chr3 147786772 147787117 -70250041 - AluSg SINE Alu -1 309 1 1001 235 46 111 chr3 147787518 147787585 -70249573 + MLT1J LTR MaLR 1 71 -440 2287 98 3 0 chr3 147787585 147787882 -70249276 + AluSg SINE Alu 1 298 -12 1001 235 46 111 chr3 147787882 147788354 -70248804 + MLT1J LTR MaLR 71 505 -6 691 117 31 47 chr3 147788516 147788644 -70248514 - FLAM_C SINE Alu -9 134 9 2339 100 3 0 chr3 147789115 147789424 -70247734 + AluSx SINE Alu 1 310 -2 778 301 68 27 chr3 147789588 147789957 -70247201 + L2 LINE L2 2031 2414 -900 346 237 108 0 chr3 147789958 147790051 -70247107 + MIR SINE MIR 5 107 -155 579 234 163 0 chr3 147790283 147790424 -70246734 - MER5A DNA MER1_type -15 174 11 782 102 62 23 chr3 147790622 147790750 -70246408 + FRAM SINE Alu 33 165 -11 2248 134 3 0 chr3 147791065 147791372 -70245786 - AluSx SINE Alu -4 308 1 1982 119 50 0 chr3 147791716 147791994 -70245164 - AluSx SINE Alu -20 292 1 2094 143 34 14 chr3 147792024 147792381 -70244777 + THE1B LTR MaLR 1 364 0 524 214 10 0 chr3 147792707 147792805 -70244353 + AluSc SINE Alu 121 219 -90 2270 124 0 0 chr3 147792903 147793210 -70243948 - AluSx SINE Alu -5 307 1 21 0 0 0 chr3 147793258 147793279 -70243879 + AT_rich Low_complexity Low_complexity 1 21 0 1886 145 0 0 chr3 147793793 147794069 -70243089 + AluSx SINE Alu 1 276 -36 194 256 0 0 chr3 147794152 147794191 -70242967 + MIR SINE MIR 157 195 -67 1396 181 113 21 chr3 147794635 147794917 -70242241 + AluJo SINE Alu 1 308 -4 217 208 21 0 chr3 147795497 147795545 -70241613 - MIR3 SINE MIR -40 168 120 22 56 0 0 chr3 147795627 147795663 -70241495 + AT_rich Low_complexity Low_complexity 1 36 0 2101 132 0 0 chr3 147795956 147796251 -70240907 - AluSx SINE Alu -17 295 1 346 279 149 5 chr3 147796409 147796631 -70240527 - MER112 DNA MER1_type 0 256 3 1179 172 19 0 chr3 147796739 147796954 -70240204 - AluJb SINE Alu -13 299 81 701 136 86 14 chr3 147797365 147797505 -70239653 + L1MB3 LINE L1 6025 6174 -9 432 316 56 48 chr3 147797521 147797879 -70239279 - L1M4 LINE L1 -3653 2493 2133 2089 134 0 10 chr3 147798294 147798600 -70238558 - AluSx SINE Alu -9 303 1 2111 92 17 14 chr3 147798688 147798980 -70238178 - AluSx SINE Alu -18 294 2 1829 158 6 25 chr3 147799511 147799828 -70237330 - AluSx SINE Alu -1 311 1 21 0 0 0 chr3 147799941 147799962 -70237196 + AT_rich Low_complexity Low_complexity 1 21 0 2204 114 3 0 chr3 147800261 147800560 -70236598 + AluSx SINE Alu 1 300 -12 2201 84 28 0 chr3 147801062 147801349 -70235809 + AluY SINE Alu 1 295 -16 340 308 0 0 chr3 147801491 147801582 -70235576 - L1MC4 LINE L1 -1339 6703 6613 22 35 0 0 chr3 147801585 147801614 -70235544 + AT_rich Low_complexity Low_complexity 1 29 0 2291 111 3 0 chr3 147801818 147802125 -70235033 + AluSp SINE Alu 1 308 -5 1971 164 0 3 chr3 147802899 147803197 -70233961 - AluSx SINE Alu -15 297 1 265 172 0 17 chr3 147803197 147803255 -70233903 + Alu SINE Alu 245 301 0 274 216 0 0 chr3 147803573 147803624 -70233534 + AluSp SINE Alu 136 186 -117 14940 64 2 2 chr3 147803628 147805707 -70231451 + L1P LINE L1 935 3012 -3134 995 129 0 32 chr3 147805828 147805983 -70231175 - AluJb SINE Alu -162 150 1 2259 132 0 0 chr3 147805996 147806306 -70230852 - AluSx SINE Alu -2 310 1 39 60 0 0 chr3 147806512 147806579 -70230579 + AT_rich Low_complexity Low_complexity 1 67 0 21 57 0 0 chr3 147806730 147806765 -70230393 + AT_rich Low_complexity Low_complexity 1 35 0 546 277 102 70 chr3 147807138 147807607 -70229551 - L1ME3A LINE L1 -38 6132 5649 1456 164 61 83 chr3 147807607 147807815 -70229343 - Charlie1 DNA MER1_type 0 2761 2550 1893 158 0 0 chr3 147807815 147808100 -70229058 - AluJb SINE Alu -16 296 12 1456 164 61 83 chr3 147808100 147808119 -70229039 - Charlie1 DNA MER1_type -211 2550 2532 1995 128 28 3 chr3 147808119 147808409 -70228749 - AluSx SINE Alu -15 297 1 2310 102 0 0 chr3 147808419 147808722 -70228436 - AluSg SINE Alu -7 303 1 1456 164 61 83 chr3 147808722 147808976 -70228182 - Charlie1 DNA MER1_type -238 2523 2279 623 201 67 15 chr3 147808969 147809103 -70228055 - Charlie1 DNA MER1_type -2614 147 7 * 500 243 111 11 chr3 147809286 147809525 -70227633 - L1ME3A LINE L1 -528 5638 5373 338 125 0 31 chr3 147809662 147809726 -70227432 - AluSx SINE Alu 0 300 239 1592 80 10 0 chr3 147809727 147809928 -70227230 - AluSx SINE Alu -105 207 5 1115 128 78 55 chr3 147810089 147810307 -70226851 - AluSg/x SINE Alu -5 305 83 1532 198 0 0 chr3 147810328 147810616 -70226542 - AluSx SINE Alu -24 288 1 2327 103 0 0 chr3 147810625 147810926 -70226232 - AluSg SINE Alu -9 301 1 1189 118 26 31 chr3 147810929 147811124 -70226034 - AluSq SINE Alu 0 313 120 25 65 0 0 chr3 147811483 147811529 -70225629 + AT_rich Low_complexity Low_complexity 1 46 0 704 261 129 35 chr3 147811570 147811670 -70225488 - L1ME4a LINE L1 -25 6096 6007 2191 120 0 0 chr3 147811670 147811979 -70225179 - AluY SINE Alu -2 309 1 704 261 129 35 chr3 147811979 147812368 -70224790 - L1ME4a LINE L1 -114 6007 5561 2554 75 0 0 chr3 147812789 147813094 -70224064 + AluSc SINE Alu 1 305 -4 2194 116 0 3 chr3 147814332 147814635 -70222523 + AluSg SINE Alu 1 302 -8 2216 130 0 0 chr3 147814643 147814951 -70222207 + AluSx SINE Alu 1 308 -4 1316 99 89 11 chr3 147814952 147815143 -70222015 + AluSg/x SINE Alu 83 288 -22 591 131 0 0 chr3 147815401 147815485 -70221673 + FLAM_C SINE Alu 35 118 -25 23 54 0 0 chr3 147815485 147815522 -70221636 + AT_rich Low_complexity Low_complexity 1 37 0 2294 106 0 0 chr3 147815797 147816098 -70221060 + AluSg SINE Alu 2 302 -8 471 308 57 0 chr3 147816142 147816301 -70220857 + MIR SINE MIR 22 189 -73 183 262 24 0 chr3 147817023 147817065 -70220093 - L2 LINE L2 -19 3253 3211 1070 199 28 0 chr3 147817114 147817325 -70219833 + MER58A DNA MER1_type 4 220 -4 481 147 0 74 chr3 147817712 147817807 -70219351 + AluJb SINE Alu 87 174 -138 2392 90 0 10 chr3 147818096 147818408 -70218750 - AluSg SINE Alu -1 309 1 1862 163 3 3 chr3 147818462 147818744 -70218414 + AluJo SINE Alu 1 282 -30 1624 177 32 0 chr3 147819015 147819297 -70217861 - AluJo SINE Alu -21 291 1 2086 128 10 7 chr3 147819679 147819977 -70217181 - AluSx SINE Alu -13 299 1 2136 149 3 0 chr3 147819986 147820295 -70216863 - AluSx SINE Alu -2 310 1 729 208 71 47 chr3 147820366 147820480 -70216678 + MIR SINE MIR 2 112 -150 2613 58 0 0 chr3 147820480 147820790 -70216368 - AluY SINE Alu -1 310 1 729 208 71 47 chr3 147820790 147820930 -70216228 + MIR SINE MIR 112 262 0 2317 96 0 26 chr3 147821753 147822066 -70215092 + AluSq SINE Alu 1 305 -8 287 343 0 0 chr3 147822437 147822510 -70214648 - L2 LINE L2 -5 3308 3236 340 331 21 41 chr3 147822566 147822711 -70214447 - MIR3 SINE MIR -3 205 64 758 332 128 21 chr3 147822822 147823386 -70213772 + L2 LINE L2 1736 2359 -955 2292 111 0 13 chr3 147823415 147823730 -70213428 - AluSx SINE Alu -1 311 1 2085 108 0 35 chr3 147823928 147824243 -70212915 + AluSc SINE Alu 1 304 -5 2370 84 0 13 chr3 147824404 147824715 -70212443 + AluSx SINE Alu 5 311 -1 481 147 0 74 chr3 147825003 147825098 -70212060 - AluJb SINE Alu -138 174 87 1070 199 28 0 chr3 147825485 147825696 -70211462 - MER58A DNA MER1_type -4 220 4 183 262 24 0 chr3 147825745 147825787 -70211371 + L2 LINE L2 3211 3253 -19 471 308 57 0 chr3 147826511 147826670 -70210488 - MIR SINE MIR -73 189 22 2294 106 0 0 chr3 147826714 147827015 -70210143 - AluSg SINE Alu -8 302 2 23 54 0 0 chr3 147827290 147827327 -70209831 + AT_rich Low_complexity Low_complexity 1 37 0 591 131 0 0 chr3 147827327 147827411 -70209747 - FLAM_C SINE Alu -25 118 35 1301 105 89 11 chr3 147827669 147827860 -70209298 - AluSg/x SINE Alu -22 288 83 2216 130 0 0 chr3 147827861 147828169 -70208989 - AluSx SINE Alu -4 308 1 2194 116 0 3 chr3 147828177 147828480 -70208678 - AluSg SINE Alu -8 302 1 2589 72 0 0 chr3 147829718 147830024 -70207134 - AluSc SINE Alu -3 306 1 714 252 131 42 chr3 147830445 147830834 -70206324 + L1ME4a LINE L1 5561 5997 -124 2151 125 0 0 chr3 147830834 147831145 -70206013 + AluY SINE Alu 1 311 0 714 252 131 42 chr3 147831145 147831204 -70205954 + L1ME4a LINE L1 5997 6049 -72 28114 47 10 2 chr3 147831361 147835863 -70201295 + L1PA5 LINE L1 1616 6153 -1 418 248 67 0 chr3 147835863 147835968 -70201190 + FAM SINE Alu 55 166 -19 385 223 77 77 chr3 147836024 147836244 -70200914 + L1M4 LINE L1 4560 4779 -1367 1669 187 7 3 chr3 147836572 147836866 -70200292 - AluJb SINE Alu -17 295 1 3277 117 38 47 chr3 147837625 147838157 -70199001 + MER1A DNA MER1_type 1 527 0 192 280 0 0 chr3 147838760 147838810 -70198348 - L2 LINE L2 0 3272 3223 204 367 16 62 chr3 147839045 147839173 -70197985 + MIR SINE MIR 20 141 -121 329 330 67 10 chr3 147839191 147839385 -70197773 + MER63A DNA MER1_type 1 205 -5 439 265 47 65 chr3 147839461 147839631 -70197527 + LTR16A1 LTR ERVL 1 167 -290 785 267 31 49 chr3 147839672 147839868 -70197290 + LTR16A1 LTR ERVL 173 364 -93 2279 130 0 0 chr3 147839868 147840176 -70196982 - AluSq SINE Alu -5 308 1 785 267 31 49 chr3 147840176 147840267 -70196891 + LTR16A1 LTR ERVL 364 455 -2 330 289 70 26 chr3 147840269 147840425 -70196733 + HERV16 LTR ERVL 1 163 -4833 21 0 0 0 chr3 147842518 147842539 -70194619 + AT_rich Low_complexity Low_complexity 1 21 0 2053 125 4 0 chr3 147842539 147842819 -70194339 - AluSx SINE Alu -31 281 1 957 234 44 4 chr3 147843534 147843782 -70193376 + MIR SINE MIR 4 261 -1 41136 30 22 1 chr3 147843808 147849833 -70187325 - L1HS LINE L1 -2 6153 1 2302 98 0 0 chr3 147849905 147850200 -70186958 + AluY SINE Alu 1 295 -16 250 297 67 20 chr3 147850478 147850732 -70186426 - L1MC4a LINE L1 -398 5764 5665 397 248 96 25 chr3 147850743 147850900 -70186258 - MER112 DNA MER1_type -1 259 92 279 0 0 0 chr3 147851729 147851760 -70185398 + (A)n Simple_repeat Simple_repeat 1 31 0 2583 95 3 0 chr3 147851763 147852133 -70185025 - L1PA8A LINE L1 -30 6101 5731 1431 232 126 24 chr3 147852434 147852852 -70184306 + MLT1F LTR MaLR 1 483 -59 2269 113 0 0 chr3 147852852 147853152 -70184006 - AluSx SINE Alu -12 300 1 1431 232 126 24 chr3 147853152 147853215 -70183943 + MLT1F LTR MaLR 483 538 -4 21 57 0 0 chr3 147853584 147853619 -70183539 + AT_rich Low_complexity Low_complexity 1 35 0 218 28 0 56 chr3 147854748 147854784 -70182374 + (TTTAA)n Simple_repeat Simple_repeat 3 36 0 1924 124 48 0 chr3 147854784 147855057 -70182101 - AluSx SINE Alu -26 286 1 458 281 42 59 chr3 147855658 147855857 -70181301 - L1MEd LINE L1 -4866 1253 1154 938 172 0 0 chr3 147855857 147856008 -70181150 - FRAM SINE Alu -12 154 4 458 281 42 59 chr3 147856008 147856175 -70180983 - L1MEd LINE L1 -4965 1154 986 271 274 42 42 chr3 147856272 147856440 -70180718 - L1MC5 LINE L1 -492 7469 7302 1873 132 11 4 chr3 147856440 147856748 -70180410 + AluSx SINE Alu 1 310 0 270 267 37 43 chr3 147857208 147857369 -70179789 + L1MEc LINE L1 55 214 -6182 276 274 60 68 chr3 147857417 147857665 -70179493 + L1MEc LINE L1 1700 1945 -4451 1246 260 97 19 chr3 147857687 147857791 -70179367 + L1MEc LINE L1 3049 3144 -3071 1802 187 7 3 chr3 147857791 147858101 -70179057 + AluJb SINE Alu 1 311 -1 1246 260 97 19 chr3 147858101 147858112 -70179046 + L1MEc LINE L1 3144 3153 -3062 1924 161 0 0 chr3 147858112 147858404 -70178754 + AluJb SINE Alu 11 302 -10 1246 260 97 19 chr3 147858404 147858719 -70178439 + L1MEc LINE L1 3153 3442 -2773 1555 189 10 16 chr3 147858719 147859032 -70178126 + AluJo SINE Alu 2 312 0 1246 260 97 19 chr3 147859032 147859595 -70177563 + L1MEc LINE L1 3442 4150 -2065 * 1609 241 84 24 chr3 147859593 147860232 -70176926 + L1MEc LINE L1 4603 5280 -935 2131 105 0 14 chr3 147860285 147860416 -70176742 + AluSq SINE Alu 6 137 -173 2339 88 0 10 chr3 147860416 147860724 -70176434 + AluY SINE Alu 1 305 -6 2131 105 0 14 chr3 147860724 147860901 -70176257 + AluSq SINE Alu 137 310 0 2662 249 87 34 chr3 147860933 147862289 -70174869 + L1M4 LINE L1 2554 3988 -2158 2327 52 3 48 chr3 147862289 147862598 -70174560 + AluY SINE Alu 1 295 -16 2662 249 87 34 chr3 147862598 147862641 -70174517 + L1M4 LINE L1 3988 4027 -2119 2307 94 3 0 chr3 147862641 147862940 -70174218 + AluSp SINE Alu 1 300 -13 207 0 0 0 chr3 147862941 147862964 -70174194 + (TA)n Simple_repeat Simple_repeat 2 24 0 491 128 12 0 chr3 147862964 147863050 -70174108 + (CA)n Simple_repeat Simple_repeat 2 88 0 353 196 54 169 chr3 147863093 147863277 -70173881 + L1ME1 LINE L1 5867 6029 -137 532 191 41 14 chr3 147863285 147863432 -70173726 + L1MA10 LINE L1 6184 6334 0 1015 254 8 8 chr3 147863670 147863906 -70173252 + MER8 DNA MER2_type 4 239 0 1584 163 89 0 chr3 147863918 147864188 -70172970 - AluJb SINE Alu -14 298 5 27 0 0 0 chr3 147864560 147864587 -70172571 + AT_rich Low_complexity Low_complexity 1 27 0 23 78 0 0 chr3 147865889 147865940 -70171218 + AT_rich Low_complexity Low_complexity 1 51 0 1712 197 126 19 chr3 147866021 147866443 -70170715 + MLT1C LTR MaLR 1 467 0 2228 93 14 0 chr3 147866635 147866926 -70170232 + AluSp SINE Alu 1 295 -18 371 343 6 24 chr3 147867838 147868004 -70169154 + L2 LINE L2 2247 2409 -905 2319 97 0 3 chr3 147868472 147868772 -70168386 - AluSq SINE Alu -14 299 1 483 249 297 0 chr3 147870075 147870324 -70166834 + MER5C DNA MER1_type 1 323 -1 567 319 218 3 chr3 147870360 147870746 -70166412 - L2 LINE L2 -37 3276 2808 2073 117 0 46 chr3 147871084 147871409 -70165749 + AluSx SINE Alu 1 310 -2 234 277 48 24 chr3 147871515 147871598 -70165560 - L2 LINE L2 -1047 2267 2183 693 271 92 4 chr3 147871721 147871950 -70165208 - MIR SINE MIR -13 249 1 1664 170 29 42 chr3 147872092 147872403 -70164755 - AluJb SINE Alu -5 307 1 647 307 146 0 chr3 147872584 147872871 -70164287 - L2 LINE L2 -1271 2043 1715 1382 180 63 71 chr3 147872876 147873141 -70164017 + MLT2C2 LTR ERVL 1 267 -197 1664 206 4 0 chr3 147873141 147873447 -70163711 + AluJo SINE Alu 1 307 0 1382 180 63 71 chr3 147873447 147873573 -70163585 + MLT2C2 LTR ERVL 267 392 -72 217 211 0 0 chr3 147873584 147873622 -70163536 + (CGTG)n Simple_repeat Simple_repeat 3 40 0 255 79 0 0 chr3 147873623 147873661 -70163497 + (GA)n Simple_repeat Simple_repeat 1 38 0 1172 300 152 31 chr3 147873716 147874479 -70162679 - L2 LINE L2 -1610 1704 850 541 143 0 0 chr3 147874783 147874874 -70162284 + L1PA13 LINE L1 5560 5650 -511 807 120 11 115 chr3 147874874 147875028 -70162130 + THE1C LTR MaLR 1 135 -240 1879 120 46 7 chr3 147875028 147875312 -70161846 - AluSg SINE Alu -15 295 1 807 120 11 115 chr3 147875312 147875340 -70161818 + THE1C LTR MaLR 135 164 -211 1188 112 0 12 chr3 147875346 147875515 -70161643 - AluSg/x SINE Alu -11 299 133 2239 97 21 0 chr3 147875520 147875809 -70161349 - AluSx SINE Alu -17 295 1 981 150 35 53 chr3 147875810 147876037 -70161121 + THE1C LTR MaLR 153 375 0 3450 116 0 0 chr3 147876039 147876550 -70160608 + L1PA13 LINE L1 5648 6158 -5 723 170 0 30 chr3 147876708 147876891 -70160267 + FLAM_C SINE Alu 3 181 0 1108 154 12 0 chr3 147876892 147877054 -70160104 + AluJb SINE Alu 130 293 -19 230 292 34 0 chr3 147877137 147877226 -70159932 + HAL1 LINE L1 328 419 -2088 236 276 40 0 chr3 147877590 147877666 -70159492 + HAL1 LINE L1 804 882 -1625 1847 135 3 40 chr3 147877801 147878104 -70159054 + AluSx SINE Alu 1 292 -20 553 248 164 35 chr3 147878247 147878594 -70158564 + HAL1 LINE L1 1395 1786 -721 21 36 0 0 chr3 147878651 147878679 -70158479 + AT_rich Low_complexity Low_complexity 1 28 0 6634 53 1 0 chr3 147878986 147879809 -70157349 + L1PA6 LINE L1 5329 6152 -2 1985 153 0 0 chr3 147879820 147880120 -70157038 + AluSx SINE Alu 1 300 -12 359 286 59 0 chr3 147880208 147880327 -70156831 - MIR SINE MIR -65 197 72 28 29 0 0 chr3 147880892 147880927 -70156231 + AT_rich Low_complexity Low_complexity 1 35 0 1324 195 55 39 chr3 147880974 147881281 -70155877 + AluSx SINE Alu 1 312 0 415 300 29 3 chr3 147881488 147881673 -70155485 - MIR SINE MIR -24 238 5 328 231 17 5 chr3 147884911 147885032 -70152126 + MER5A DNA MER1_type 7 189 0 22 35 0 0 chr3 147885842 147885871 -70151287 + AT_rich Low_complexity Low_complexity 1 29 0 36693 66 4 5 chr3 147887314 147893123 -70144035 - L1PA5 LINE L1 -7 6147 344 6627 204 79 41 chr3 147893129 147893405 -70143753 + L1MA4A LINE L1 1639 1903 -4945 1419 199 79 4 chr3 147893405 147893672 -70143486 + AluSx SINE Alu 1 287 -25 230 49 0 49 chr3 147893676 147893717 -70143441 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6627 204 79 41 chr3 147893717 147895157 -70142001 + L1MA4A LINE L1 1905 3289 -3559 371 122 0 0 chr3 147895157 147895206 -70141952 - 5S rRNA rRNA -72 49 1 6627 204 79 41 chr3 147895206 147895524 -70141634 + L1MA4A LINE L1 3289 3593 -3255 7598 23 3 6 chr3 147895524 147895561 -70141597 + L1PA2 LINE L1 5300 5336 -819 2051 114 7 0 chr3 147895561 147895841 -70141317 + AluSq SINE Alu 1 282 -31 7598 23 3 6 chr3 147895841 147896661 -70140497 + L1PA2 LINE L1 5336 6155 0 6627 204 79 41 chr3 147896661 147898053 -70139105 + L1MA4A LINE L1 3593 5257 -1591 2232 180 32 10 chr3 147898124 147898529 -70138629 - MSTB LTR MaLR -12 414 1 6082 148 28 32 chr3 147898529 147900118 -70137040 + L1MA4A LINE L1 5254 6835 -170 2012 145 0 0 chr3 147900118 147900428 -70136730 + AluSx SINE Alu 1 310 0 6082 148 28 32 chr3 147900428 147900599 -70136559 + L1MA4A LINE L1 6835 7005 0 1065 189 64 75 chr3 147901165 147901200 -70135958 + MIR SINE MIR 1 35 -227 1812 114 4 11 chr3 147901200 147901464 -70135694 + AluSx SINE Alu 45 306 -6 1065 189 64 75 chr3 147901464 147901693 -70135465 + MIR SINE MIR 35 262 0 671 215 11 28 chr3 147901909 147902086 -70135072 + Charlie7 DNA MER1_type 29 202 -2410 230 178 0 0 chr3 147902236 147902281 -70134877 - Alu SINE Alu 0 308 264 2356 74 3 7 chr3 147904093 147904390 -70132768 + AluY SINE Alu 1 296 -15 21 0 0 0 chr3 147904945 147904966 -70132192 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr3 147905177 147905205 -70131953 + AT_rich Low_complexity Low_complexity 1 28 0 2133 144 0 0 chr3 147905781 147906093 -70131065 + AluSx SINE Alu 1 312 0 408 219 0 0 chr3 147906281 147906354 -70130804 + MER5B DNA MER1_type 2 74 -104 21 0 0 0 chr3 147906396 147906417 -70130741 + AT_rich Low_complexity Low_complexity 1 21 0 423 0 0 0 chr3 147906780 147906827 -70130331 + (CA)n Simple_repeat Simple_repeat 1 47 0 388 220 53 30 chr3 147906844 147906976 -70130182 + MER103 DNA DNA 3 137 -29 482 305 28 40 chr3 147907724 147907973 -70129185 + L1MC/D LINE L1 5528 5773 -2035 453 257 238 0 chr3 147908002 147908208 -70128950 - MIR SINE MIR -6 256 2 298 339 34 8 chr3 147908827 147908945 -70128213 + MIR SINE MIR 31 151 -111 194 309 86 25 chr3 147908952 147909033 -70128125 + L2 LINE L2 3210 3295 -18 * 221 333 0 0 chr3 147909030 147909111 -70128047 + MIR SINE MIR 166 246 -16 865 165 67 6 chr3 147909521 147909685 -70127473 + AluJb SINE Alu 132 305 -7 839 269 74 72 chr3 147909702 147910134 -70127024 + HERV16 LTR ERVL 4505 4903 -93 1505 122 116 135 chr3 147910134 147910608 -70126550 + MER4C LTR ERV1 1 465 0 839 269 74 72 chr3 147910608 147910703 -70126455 + HERV16 LTR ERVL 4903 4996 0 1141 246 66 83 chr3 147910703 147910730 -70126428 + LTR16B LTR ERVL 1 27 -437 2446 74 0 0 chr3 147910730 147911026 -70126132 + AluY SINE Alu 1 296 -15 1141 246 66 83 chr3 147911026 147911469 -70125689 + LTR16B LTR ERVL 27 463 -1 592 290 48 16 chr3 147912119 147912305 -70124853 + MLT1J2 LTR MaLR 259 450 0 2155 89 6 54 chr3 147912715 147913030 -70124128 - AluSx SINE Alu -12 300 1 379 294 35 35 chr3 147913066 147913209 -70123949 - MIR SINE MIR -52 210 68 241 253 58 11 chr3 147913554 147913641 -70123517 + LTR16B LTR ERVL 244 334 -130 2040 121 35 0 chr3 147913715 147914005 -70123153 - AluSx SINE Alu -12 300 1 214 353 88 0 chr3 147914291 147914393 -70122765 - L2 LINE L2 -23 3290 3180 868 214 40 0 chr3 147914977 147915150 -70122008 - AluJo SINE Alu 0 312 133 1822 185 3 0 chr3 147915223 147915515 -70121643 + AluJb SINE Alu 1 293 -19 356 246 119 17 chr3 147915528 147915646 -70121512 - AluJo SINE Alu -172 130 1 1513 230 43 50 chr3 147916461 147916646 -70120512 + MLT1C LTR MaLR 6 191 -276 2364 100 0 3 chr3 147916646 147916956 -70120202 + AluSc SINE Alu 1 309 0 1513 230 43 50 chr3 147916956 147917231 -70119927 + MLT1C LTR MaLR 191 463 -4 1869 161 7 10 chr3 147917946 147918250 -70118908 - AluJo SINE Alu -9 303 1 1146 168 5 29 chr3 147918357 147918410 -70118748 + AluJb SINE Alu 86 139 -173 1903 149 13 10 chr3 147918410 147918712 -70118446 + AluSx SINE Alu 1 303 -9 1146 168 5 29 chr3 147918712 147918867 -70118291 + AluJb SINE Alu 139 289 -23 2173 121 0 0 chr3 147918871 147919168 -70117990 + AluSx SINE Alu 1 297 -15 2502 66 0 10 chr3 147919172 147919477 -70117681 + AluY SINE Alu 1 302 -9 1646 224 37 19 chr3 147919477 147919887 -70117271 + L1ME1 LINE L1 5478 5894 -272 520 252 64 13 chr3 147919879 147920095 -70117063 + L1MB7 LINE L1 5939 6171 -8 * 2334 86 0 0 chr3 147920096 147920386 -70116772 - AluSg1 SINE Alu -19 290 1 2210 101 0 10 chr3 147920404 147920710 -70116448 - AluY SINE Alu -8 303 1 519 219 61 0 chr3 147920715 147920829 -70116329 + L1MC4 LINE L1 7552 7672 -370 216 158 0 0 chr3 147920840 147920878 -70116280 + (TA)n Simple_repeat Simple_repeat 2 39 0 1058 204 12 87 chr3 147920962 147921274 -70115884 + L1MC4 LINE L1 7725 8010 -32 2179 138 0 0 chr3 147921274 147921570 -70115588 - AluSx SINE Alu -14 298 3 1058 204 12 87 chr3 147921570 147921601 -70115557 + L1MC4 LINE L1 8010 8042 0 998 159 0 0 chr3 147921847 147922029 -70115129 - AluSg/x SINE Alu 0 315 134 2295 98 3 3 chr3 147922029 147922335 -70114823 - AluSx SINE Alu -6 306 1 242 325 75 48 chr3 147922335 147922670 -70114488 + L2 LINE L2 2130 2473 -841 395 232 74 32 chr3 147922762 147922788 -70114370 - L1ME4a LINE L1 -100 6021 5998 1154 187 32 61 chr3 147922788 147922876 -70114282 - MER8 DNA MER2_type 0 239 150 2428 80 0 0 chr3 147922876 147923177 -70113981 + AluY SINE Alu 1 301 -10 1154 187 32 61 chr3 147923177 147923334 -70113824 - MER8 DNA MER2_type -89 150 1 395 232 74 32 chr3 147923334 147923497 -70113661 - L1ME4a LINE L1 -123 5998 5824 1483 140 88 121 chr3 147923503 147923967 -70113191 - LTR7 LTR ERV1 -1 449 1 2606 139 9 9 chr3 147923967 147924398 -70112760 - HERVH LTR ERV1 0 7713 7283 7099 132 10 5 chr3 147924410 147926124 -70111034 - HERVH LTR ERV1 -1840 5251 3357 * 7392 186 18 50 chr3 147926117 147926664 -70110494 - HERVH LTR ERV1 -3576 3078 2515 2349 98 0 0 chr3 147926664 147926961 -70110197 + AluY SINE Alu 1 297 -14 7392 186 18 50 chr3 147926961 147928867 -70108291 - HERVH LTR ERV1 -4139 2515 801 1833 178 101 28 chr3 147928921 147929349 -70107809 - HERVH LTR ERV1 -7254 459 1 1364 167 121 74 chr3 147929349 147929779 -70107379 - LTR7 LTR ERV1 0 450 1 1016 150 64 0 chr3 147929779 147929952 -70107206 + MER5A DNA MER1_type 6 189 0 1902 102 56 7 chr3 147929965 147930249 -70106909 - AluSx SINE Alu -14 298 1 643 232 39 19 chr3 147930249 147930404 -70106754 - L1M4b LINE L1 -6691 168 11 1465 176 26 22 chr3 147931415 147931688 -70105470 + AluJo SINE Alu 3 276 -36 534 324 31 59 chr3 147932124 147932380 -70104778 + MIR SINE MIR 1 249 -13 2271 123 0 3 chr3 147932697 147933007 -70104151 - AluSx SINE Alu -3 309 1 584 197 150 27 chr3 147933013 147933160 -70103998 - AluJb SINE Alu -7 305 141 242 266 18 92 chr3 147933634 147933702 -70103456 - MIR SINE MIR -114 148 89 1470 145 74 0 chr3 147933702 147933944 -70103214 + AluJb SINE Alu 43 302 -10 242 266 18 92 chr3 147933944 147933984 -70103174 - MIR SINE MIR -173 89 48 906 179 20 56 chr3 147934038 147934064 -70103094 + MER5A DNA MER1_type 1 26 -163 2031 166 69 64 chr3 147934064 147934545 -70102613 - MER31A LTR ERV1 -2 483 1 906 179 20 56 chr3 147934545 147934714 -70102444 + MER5A DNA MER1_type 26 189 0 214 170 21 21 chr3 147934924 147934971 -70102187 - L2 LINE L2 -4 3309 3263 394 288 85 26 chr3 147935501 147935654 -70101504 + L2 LINE L2 3107 3268 -4 286 245 155 26 chr3 147936170 147936325 -70100833 + MIR SINE MIR 13 187 -21 626 204 126 52 chr3 147936336 147936496 -70100662 + MIR SINE MIR 6 190 -72 2129 108 0 11 chr3 147936496 147936806 -70100352 - AluSx SINE Alu 0 307 1 626 204 126 52 chr3 147936806 147936874 -70100284 + MIR SINE MIR 190 252 -10 252 288 0 0 chr3 147937117 147937183 -70099975 - LTR16B LTR ERVL -4 460 395 1989 138 20 0 chr3 147937183 147937481 -70099677 + AluSx SINE Alu 1 304 -8 2174 128 10 0 chr3 147937582 147937933 -70099225 + AluSx SINE Alu 3 356 0 1575 152 18 21 chr3 147938648 147938767 -70098391 + AluSx SINE Alu 14 132 -180 2141 92 26 13 chr3 147938767 147939072 -70098086 + AluSx SINE Alu 1 309 -3 1575 152 18 21 chr3 147939072 147939235 -70097923 + AluSx SINE Alu 132 295 -17 817 160 8 0 chr3 147939351 147939476 -70097682 - FLAM_C SINE Alu -16 127 2 2354 91 0 0 chr3 147939487 147939783 -70097375 - AluSg SINE Alu -14 296 1 1906 140 0 0 chr3 147939785 147940057 -70097101 - AluSx SINE Alu -18 294 23 1415 173 85 3 chr3 147940059 147940342 -70096816 - AluJo SINE Alu -6 306 1 1965 140 0 7 chr3 147940605 147940912 -70096246 - AluY SINE Alu -6 305 1 824 176 14 14 chr3 147940916 147941064 -70096094 - AluSg/x SINE Alu 0 312 165 527 121 61 10 chr3 147941198 147941297 -70095861 - L1M4 LINE L1 -861 5285 5182 2029 139 7 7 chr3 147941300 147941609 -70095549 - AluSx SINE Alu -1 311 3 2113 210 25 41 chr3 147941612 147941846 -70095312 - L1M4 LINE L1 -1505 4641 4405 2006 102 80 0 chr3 147941846 147942120 -70095038 + AluSx SINE Alu 1 296 -16 2113 210 25 41 chr3 147942120 147942451 -70094707 - L1M4 LINE L1 -1741 4405 4085 2332 114 3 0 chr3 147942451 147942758 -70094400 + AluSx SINE Alu 1 308 -4 1515 203 36 54 chr3 147942764 147943262 -70093896 + L1M4 LINE L1 2454 2942 -3204 320 330 20 0 chr3 148145700 148145800 -69891358 + MIR3 SINE MIR 86 187 -21 180 176 0 0 chr3 148146321 148146355 -69890803 + G-rich Low_complexity Low_complexity 1 34 0 182 298 97 24 chr3 148146770 148146894 -69890264 - L2 LINE L2 -69 3244 3112 2531 58 3 3 chr3 148147399 148147707 -69889451 + AluY SINE Alu 1 308 -3 381 181 53 43 chr3 148147837 148147931 -69889227 - L2 LINE L2 -49 3264 3170 404 308 237 34 chr3 148147931 148148581 -69888577 + L2 LINE L2 2063 2844 -470 4152 223 77 22 chr3 148149866 148151133 -69886025 + L1MC4a LINE L1 3608 4944 -1202 21 0 0 0 chr3 148153836 148153857 -69883301 + AT_rich Low_complexity Low_complexity 1 21 0 213 39 0 0 chr3 148153962 148153988 -69883170 + (CAAT)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr3 148154219 148154240 -69882918 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr3 148155166 148155192 -69881966 + AT_rich Low_complexity Low_complexity 1 26 0 32 26 0 0 chr3 148155343 148155382 -69881776 + AT_rich Low_complexity Low_complexity 1 39 0 243 61 0 0 chr3 148155388 148155421 -69881737 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 243 291 82 57 chr3 148155753 148155911 -69881247 - MIR SINE MIR -13 249 88 237 248 119 20 chr3 148156725 148156826 -69880332 + L1ME LINE L1 5706 5816 -305 2302 85 0 3 chr3 148157357 148157652 -69879506 - AluY SINE Alu -17 294 1 29 28 0 0 chr3 148157672 148157708 -69879450 + AT_rich Low_complexity Low_complexity 1 36 0 2076 110 25 38 chr3 148157763 148158080 -69879078 + AluSq SINE Alu 1 313 0 244 284 62 19 chr3 148159891 148160053 -69877105 + L1MC4a LINE L1 5107 5275 -871 1473 284 67 16 chr3 148160059 148160609 -69876549 + L1MC4a LINE L1 5291 5868 -1940 496 279 96 0 chr3 148160620 148160786 -69876372 + L1MC4a LINE L1 6618 6767 -1041 238 249 91 97 chr3 148160995 148161160 -69875998 + L1MC5 LINE L1 7049 7212 -749 219 36 0 0 chr3 148161844 148161872 -69875286 + (CA)n Simple_repeat Simple_repeat 1 28 0 2912 205 146 28 chr3 148162261 148163292 -69873866 + L1ME2 LINE L1 539 1661 -4879 1423 243 133 16 chr3 148163290 148163701 -69873457 + L1ME2 LINE L1 1895 2257 -4283 * 2157 137 0 0 chr3 148163701 148164008 -69873150 + AluSg SINE Alu 1 307 -3 1423 243 133 16 chr3 148164008 148164490 -69872668 + L1ME2 LINE L1 2257 2895 -3645 233 118 0 39 chr3 148164577 148164628 -69872530 + L1M LINE L1 5258 5306 -1053 2827 225 135 22 chr3 148164672 148165796 -69871362 + L1ME2 LINE L1 4414 5664 -876 1942 161 117 29 chr3 148165796 148166265 -69870893 - Tigger7 DNA MER2_type 0 2487 97 1261 149 49 152 chr3 148166265 148166594 -69870564 + AluJo SINE Alu 1 295 -17 360 220 0 55 chr3 148166664 148166755 -69870403 - Tigger7 DNA MER2_type -607 98 13 1485 219 131 24 chr3 148166838 148167341 -69869817 + L1ME2 LINE L1 5991 6547 -11 342 195 39 0 chr3 148167373 148167450 -69869708 + L1MC5 LINE L1 6971 7050 -911 569 225 7 26 chr3 148167491 148167642 -69869516 + L1MC5 LINE L1 7062 7209 -752 1861 96 0 4 chr3 148167755 148168006 -69869152 - AluSx SINE Alu -16 296 47 2104 121 7 3 chr3 148168194 148168491 -69868667 + AluSx SINE Alu 2 299 -13 1146 121 68 10 chr3 148168628 148168835 -69868323 - Tigger1 DNA MER2_type 0 2418 2200 582 148 129 0 chr3 148168831 148168932 -69868226 - Tigger1 DNA MER2_type -2279 139 26 * 1114 211 34 25 chr3 148169623 148169860 -69867298 + MER8 DNA MER2_type 1 239 0 190 286 107 36 chr3 148170159 148170271 -69866887 + MIR SINE MIR 119 238 -24 21 57 0 0 chr3 148171618 148171653 -69865505 + AT_rich Low_complexity Low_complexity 1 35 0 2145 114 3 3 chr3 148173630 148173927 -69863231 - AluSc SINE Alu -12 297 1 1062 87 40 0 chr3 148174184 148174333 -69862825 - AluY SINE Alu -8 303 149 1621 162 3 52 chr3 148174370 148174697 -69862461 + AluJb SINE Alu 1 311 -1 447 19 0 0 chr3 148175697 148175749 -69861409 + (TG)n Simple_repeat Simple_repeat 1 52 0 181 244 0 51 chr3 148176048 148176126 -69861032 + L2 LINE L2 2349 2422 -892 2310 101 0 0 chr3 148177412 148177709 -69859449 - AluSg SINE Alu -13 297 1 250 313 106 14 chr3 148177982 148178199 -69858959 + MARNA DNA Mariner 278 514 -72 642 207 184 37 chr3 148178261 148178478 -69858680 - MER112 DNA MER1_type -2 258 10 193 303 261 0 chr3 148179513 148179632 -69857526 + MIR SINE MIR 113 262 0 624 238 109 25 chr3 148179726 148179943 -69857215 - MIR SINE MIR -40 222 3 258 214 131 0 chr3 148179961 148180045 -69857113 + L1ME4a LINE L1 6021 6115 -6 1476 152 98 14 chr3 148180195 148180322 -69856836 + AluJb SINE Alu 1 116 -196 455 0 18 0 chr3 148180322 148180377 -69856781 + (TAAA)n Simple_repeat Simple_repeat 3 58 0 1476 152 98 14 chr3 148180377 148180526 -69856632 + AluJb SINE Alu 116 300 -12 22 35 0 0 chr3 148180553 148180582 -69856576 + AT_rich Low_complexity Low_complexity 1 29 0 2422 67 0 10 chr3 148180930 148181243 -69855915 - AluY SINE Alu -1 310 1 2481 68 3 3 chr3 148181764 148182075 -69855083 + AluY SINE Alu 1 311 0 206 289 169 0 chr3 148182261 148182344 -69854814 + MIR SINE MIR 43 139 -69 198 143 0 0 chr3 148183055 148183090 -69854068 + (CA)n Simple_repeat Simple_repeat 1 35 0 196 319 14 14 chr3 148183163 148183232 -69853926 + MER5A DNA MER1_type 56 124 -65 33 0 0 0 chr3 148183235 148183268 -69853890 + AT_rich Low_complexity Low_complexity 1 33 0 238 333 0 21 chr3 148183460 148183552 -69853606 + (TATATG)n Simple_repeat Simple_repeat 5 94 -51 184 29 0 57 chr3 148183552 148183587 -69853571 + (TTAAA)n Simple_repeat Simple_repeat 1 33 0 238 333 0 21 chr3 148183587 148183638 -69853520 + (TATATG)n Simple_repeat Simple_repeat 94 145 0 495 223 65 0 chr3 148183834 148183973 -69853185 + MER104 DNA Tc2 4 151 -29 245 244 222 0 chr3 148184181 148184271 -69852887 + MIR3 SINE MIR 98 207 -1 207 191 0 0 chr3 148185622 148185669 -69851489 + A-rich Low_complexity Low_complexity 1 47 0 388 177 82 33 chr3 148188799 148188928 -69848230 + MLT1J1 LTR MaLR 5 131 -319 2200 107 0 7 chr3 148189748 148190048 -69847110 - AluSc SINE Alu -11 298 1 1432 178 39 36 chr3 148192634 148192943 -69844215 + AluJb SINE Alu 3 312 0 246 318 28 0 chr3 148193885 148193992 -69843166 + L1ME LINE L1 5535 5644 -477 340 279 62 31 chr3 148194538 148194667 -69842491 + MIR3 SINE MIR 6 138 -70 262 311 130 55 chr3 148194724 148194962 -69842196 - MIR SINE MIR -6 256 1 798 246 4 94 chr3 148195246 148195522 -69841636 + MIR SINE MIR 12 262 0 195 261 211 101 chr3 148195454 148195672 -69841486 - MIR SINE MIR -10 252 11 * 1114 200 91 70 chr3 148196006 148196217 -69840941 + MER58B DNA MER1_type 4 226 -2194 2191 113 20 17 chr3 148196217 148196571 -69840587 + THE1A LTR MaLR 1 355 0 1114 200 91 70 chr3 148196571 148196689 -69840469 + MER58B DNA MER1_type 226 340 -1 331 258 43 0 chr3 148196816 148196909 -69840249 + GA-rich Low_complexity Low_complexity 3 99 0 493 118 20 0 chr3 148197467 148197556 -69839602 - L1MA4A LINE L1 -344 5958 5864 2164 96 0 25 chr3 148198303 148198617 -69838541 + AluY SINE Alu 1 306 -5 7223 214 73 22 chr3 148198754 148199626 -69837532 + L1M3 LINE L1 3026 3852 -2331 2044 132 0 7 chr3 148199626 148199930 -69837228 + AluSq SINE Alu 1 302 -11 7223 214 73 22 chr3 148199930 148200449 -69836709 + L1M3 LINE L1 3852 4343 -1840 2233 94 3 13 chr3 148200449 148200758 -69836400 + AluSc SINE Alu 1 306 -3 7223 214 73 22 chr3 148200758 148201849 -69835309 + L1M3 LINE L1 4343 5635 -548 5183 156 82 30 chr3 148201838 148202902 -69834256 + L1MC1 LINE L1 31 1149 -5277 * 1260 156 376 24 chr3 148202902 148203352 -69833806 + L1MC1 LINE L1 1416 2023 -4403 299 200 46 15 chr3 148203352 148203417 -69833741 - Tigger5 DNA MER2_type 0 2323 2257 5346 213 61 29 chr3 148203417 148203511 -69833647 + L1MC1 LINE L1 3229 3319 -3294 2428 66 0 3 chr3 148203511 148203816 -69833342 + AluY SINE Alu 1 304 -7 5346 213 61 29 chr3 148203816 148205885 -69831273 + L1MC1 LINE L1 3319 5320 -1293 1883 123 25 0 chr3 148205885 148206161 -69830997 + AluSx SINE Alu 1 283 -29 257 0 0 29 chr3 148206161 148206195 -69830963 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 5346 213 61 29 chr3 148206195 148207222 -69829936 + L1MC1 LINE L1 5319 6600 -13 2467 195 52 6 chr3 148207233 148207772 -69829386 + L1MB2 LINE L1 5601 6164 -7 241 300 243 11 chr3 148208513 148208776 -69828382 + L2 LINE L2 1928 2251 -1063 244 307 183 29 chr3 148209309 148209446 -69827712 - L2 LINE L2 -560 2754 2597 475 273 131 39 chr3 148211154 148211414 -69825744 - L2 LINE L2 -103 3210 2927 1188 308 147 19 chr3 148211446 148212018 -69825140 - L2 LINE L2 -454 2860 2216 2113 111 7 0 chr3 148212195 148212483 -69824675 + AluSg SINE Alu 1 290 -20 1709 142 3 75 chr3 148212595 148212927 -69824231 + AluJo SINE Alu 1 308 -4 21 0 0 0 chr3 148213050 148213071 -69824087 + AT_rich Low_complexity Low_complexity 1 21 0 243 321 16 78 chr3 148213682 148213875 -69823283 + L2 LINE L2 228 408 -2906 196 325 26 26 chr3 148214087 148214201 -69822957 + L2 LINE L2 682 795 -2519 917 128 8 0 chr3 148214328 148214461 -69822697 + AluSg/x SINE Alu 169 302 -8 3234 164 59 112 chr3 148214471 148215039 -69822119 - L1MA8 LINE L1 -15 6276 5680 552 42 0 0 chr3 148215039 148215110 -69822048 + (TA)n Simple_repeat Simple_repeat 2 72 0 3234 164 59 112 chr3 148215110 148215842 -69821316 - L1MA8 LINE L1 -611 5680 4911 1638 175 3 35 chr3 148215842 148216156 -69821002 - AluJo SINE Alu -8 304 1 3234 164 59 112 chr3 148216156 148216519 -69820639 - L1MA8 LINE L1 -1380 4911 4531 1424 171 123 10 chr3 148216519 148216829 -69820329 + MER2 DNA MER2_type 1 345 0 3234 164 59 112 chr3 148216829 148218033 -69819125 - L1MA8 LINE L1 -1760 4531 3181 2129 227 87 49 chr3 148218013 148219209 -69817949 - L1M4 LINE L1 -4735 2302 1 * 3332 193 32 23 chr3 148219663 148220392 -69816766 + L1MB2 LINE L1 5430 6164 -7 282 235 78 29 chr3 148220424 148220526 -69816632 - MER103 DNA DNA -8 158 52 980 225 4 35 chr3 148222186 148222413 -69814745 + MER58A DNA MER1_type 4 223 -1 285 29 0 0 chr3 148222963 148222997 -69814161 + (CA)n Simple_repeat Simple_repeat 1 34 0 207 0 0 0 chr3 148223022 148223045 -69814113 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 183 80 0 0 chr3 148223121 148223146 -69814012 + (A)n Simple_repeat Simple_repeat 1 25 0 1635 179 62 0 chr3 148224227 148224500 -69812658 + AluJb SINE Alu 2 291 -21 287 293 40 30 chr3 148225804 148225903 -69811255 - MIR SINE MIR -78 130 31 2075 36 4 0 chr3 148226179 148226428 -69810730 + L1PA3 LINE L1 5905 6154 -1 736 261 80 0 chr3 148227376 148227575 -69809583 + MIR SINE MIR 29 243 -19 2115 115 0 0 chr3 148227580 148227867 -69809291 + AluSx SINE Alu 1 287 -25 210 143 0 0 chr3 148227867 148227902 -69809256 + (CAG)n Simple_repeat Simple_repeat 1 35 0 320 356 29 0 chr3 148229099 148229203 -69807955 - MER5A DNA MER1_type -3 186 80 21 0 0 0 chr3 148229210 148229231 -69807927 + AT_rich Low_complexity Low_complexity 1 21 0 241 343 150 23 chr3 148230001 148230488 -69806670 + L2 LINE L2 1869 2417 -897 230 258 183 75 chr3 148230587 148230773 -69806385 - L2 LINE L2 -2 3311 3106 194 333 18 18 chr3 148231284 148231341 -69805817 - MIR SINE MIR -183 79 23 195 42 0 0 chr3 148232119 148232143 -69805015 + (A)n Simple_repeat Simple_repeat 1 24 0 1337 215 117 54 chr3 148232372 148232892 -69804266 + L1ME3A LINE L1 5566 6118 -52 823 289 125 68 chr3 148233036 148233926 -69803232 + L1ME1 LINE L1 288 1227 -5336 412 265 64 57 chr3 148233927 148234191 -69802967 + L1ME1 LINE L1 1111 1376 -5008 1378 163 53 35 chr3 148234230 148234512 -69802646 - MER7A DNA MER2_type -61 285 1 788 260 156 22 chr3 148234563 148234974 -69802184 + L1ME2 LINE L1 5647 6112 -52 592 263 40 0 chr3 148234974 148235129 -69802029 + MLT1G1 LTR MaLR 1 86 -444 1155 160 19 10 chr3 148235129 148235335 -69801823 + MER2 DNA MER2_type 1 208 -137 636 208 16 0 chr3 148235335 148235460 -69801698 + MLT1G1 LTR MaLR 469 595 0 1921 253 78 31 chr3 148235700 148236752 -69800406 + L1ME1 LINE L1 1795 2845 -3537 4027 174 26 26 chr3 148236810 148237299 -69799859 + L1MB3 LINE L1 5374 5865 -318 2064 147 77 15 chr3 148237299 148237700 -69799458 + MSTB LTR MaLR 1 426 0 4027 174 26 26 chr3 148237700 148238020 -69799138 + L1MB3 LINE L1 5864 6183 0 2615 218 86 7 chr3 148238020 148238703 -69798455 + L1ME1 LINE L1 5661 6397 -5 410 260 138 66 chr3 148238864 148238966 -69798192 + L1MC/D LINE L1 4967 5060 -1086 1424 177 33 73 chr3 148238966 148239266 -69797892 + AluJo SINE Alu 1 288 -24 410 260 138 66 chr3 148239266 148239525 -69797633 + L1MC/D LINE L1 5060 5354 -792 300 319 56 38 chr3 148239575 148239735 -69797423 + L1MC/D LINE L1 5510 5672 -2136 1576 269 90 17 chr3 148240058 148240887 -69796271 + L2 LINE L2 2417 3309 -4 1668 191 70 20 chr3 148240985 148241441 -69795717 + L1MB7 LINE L1 4332 4810 -1336 1662 142 99 15 chr3 148241424 148241748 -69795410 + L1MB7 LINE L1 5833 6183 -1 * 661 137 73 16 chr3 148243099 148243223 -69793935 - AluJo SINE Alu -17 295 165 490 208 30 0 chr3 148243213 148243314 -69793844 - AluJo SINE Alu -165 147 44 * 200 259 93 0 chr3 148243582 148243636 -69793522 - L2 LINE L2 -219 3053 2995 1092 129 0 109 chr3 148243836 148244084 -69793074 + AluJo SINE Alu 82 302 -10 1213 201 50 27 chr3 148244115 148244498 -69792660 + L1MA4 LINE L1 5761 6163 -8 260 323 0 0 chr3 148244788 148244853 -69792305 + MIR3 SINE MIR 134 198 -10 535 272 132 14 chr3 148244930 148245379 -69791779 + L1ME3A LINE L1 5395 5902 -269 193 296 0 28 chr3 148245719 148245790 -69791368 - MIR3 SINE MIR -4 204 136 874 138 8 0 chr3 148245834 148245957 -69791201 + AluJb SINE Alu 1 124 -188 2067 144 0 0 chr3 148245995 148246293 -69790865 + AluSx SINE Alu 6 303 -9 371 56 56 0 chr3 148246295 148246366 -69790792 + (TA)n Simple_repeat Simple_repeat 2 76 0 304 154 45 91 chr3 148246368 148246478 -69790680 - L1MCa LINE L1 -4362 2064 1960 2198 96 14 0 chr3 148247418 148247722 -69789436 - AluSx SINE Alu 0 308 1 2060 96 31 17 chr3 148249273 148249565 -69787593 - AluSc SINE Alu -13 296 1 194 320 13 40 chr3 148249643 148249718 -69787440 - MIR SINE MIR -61 147 75 24 0 0 0 chr3 148249774 148249798 -69787360 + AT_rich Low_complexity Low_complexity 1 24 0 1342 172 76 46 chr3 148249873 148250175 -69786983 + AluJo SINE Alu 1 311 -1 616 200 125 8 chr3 148250377 148250497 -69786661 + AluJo SINE Alu 2 135 -177 348 310 110 4 chr3 148250794 148250927 -69786231 + MIR3 SINE MIR 24 166 -42 417 39 0 0 chr3 148251045 148251096 -69786062 + (CA)n Simple_repeat Simple_repeat 2 52 0 243 0 0 0 chr3 148251307 148251334 -69785824 + (CA)n Simple_repeat Simple_repeat 2 28 0 185 327 82 36 chr3 148251347 148251457 -69785701 + L2 LINE L2 3148 3262 -10 1793 183 69 23 chr3 148251499 148251848 -69785310 + MLT1A1 LTR MaLR 1 365 0 273 226 296 0 chr3 148252012 148252127 -69785031 - MIR SINE MIR -10 252 104 21 0 0 0 chr3 148254290 148254311 -69782847 + GC_rich Low_complexity Low_complexity 1 21 0 225 295 9 18 chr3 148254562 148254674 -69782484 + (CCG)n Simple_repeat Simple_repeat 1 111 0 22 0 0 0 chr3 148255128 148255150 -69782008 + GC_rich Low_complexity Low_complexity 1 22 0 339 25 0 0 chr3 148255919 148255959 -69781199 + (TG)n Simple_repeat Simple_repeat 2 41 0 794 108 54 47 chr3 148256131 148256260 -69780898 - FLAM_C SINE Alu -3 130 1 207 244 105 58 chr3 148257382 148257468 -69779690 - L2 LINE L2 -50 3222 3133 2504 77 0 0 chr3 148257555 148257866 -69779292 - AluY SINE Alu 0 311 1 219 154 103 0 chr3 148258208 148258247 -69778911 + MIR SINE MIR 213 255 -7 186 43 0 0 chr3 148258250 148258273 -69778885 + (TAG)n Simple_repeat Simple_repeat 1 23 0 508 335 152 19 chr3 148258460 148259040 -69778118 + L2 LINE L2 1712 2368 -946 417 235 10 10 chr3 148259053 148259155 -69778003 - L2 LINE L2 -898 2416 2315 625 299 175 24 chr3 148259155 148259425 -69777733 + MLT1J LTR MaLR 1 331 -180 1165 176 59 116 chr3 148259425 148259812 -69777346 + MLT1A1 LTR MaLR 1 365 0 625 299 175 24 chr3 148259812 148259872 -69777286 + MLT1J LTR MaLR 331 381 -130 257 207 35 0 chr3 148259976 148260034 -69777124 - L2 LINE L2 -995 2319 2260 392 242 215 27 chr3 148260233 148260382 -69776776 + MIR SINE MIR 72 248 -14 379 256 103 26 chr3 148260405 148260522 -69776636 + MIR SINE MIR 55 180 -82 1016 282 144 2 chr3 148260528 148261102 -69776056 - L2 LINE L2 0 3313 2666 206 299 75 0 chr3 148261092 148261126 -69776032 + MIR SINE MIR 179 249 -12 * 209 156 0 0 chr3 148261126 148261158 -69776000 + L2 LINE L2 3263 3294 -19 243 345 48 0 chr3 148261271 148261355 -69775803 + L2 LINE L2 3149 3236 -36 234 329 186 29 chr3 148261635 148261845 -69775313 + L2 LINE L2 3030 3272 0 185 250 17 33 chr3 148262121 148262181 -69774977 + MIR3 SINE MIR 135 193 -15 338 265 210 0 chr3 148263054 148263216 -69773942 - MIR SINE MIR -18 244 49 269 296 80 23 chr3 148263449 148263537 -69773621 + MIR SINE MIR 59 151 -111 1266 191 26 4 chr3 148263642 148263873 -69773285 - LTR16C LTR ERVL 0 491 256 300 263 40 10 chr3 148263905 148264004 -69773154 - LTR16C LTR ERVL -332 159 58 27 29 0 0 chr3 148264855 148264889 -69772269 + AT_rich Low_complexity Low_complexity 1 34 0 830 144 8 0 chr3 148264889 148265007 -69772151 - FLAM_C SINE Alu -24 119 1 343 307 92 23 chr3 148265087 148265305 -69771853 - L1MC4 LINE L1 -17 8025 7793 2097 201 35 128 chr3 148265479 148265551 -69771607 + MER77 LTR ERV1 1 78 -527 2569 66 0 0 chr3 148265551 148265856 -69771302 + AluY SINE Alu 1 305 -6 2097 201 35 128 chr3 148265856 148266448 -69770710 + MER77 LTR ERV1 78 603 -2 1316 267 59 23 chr3 148266924 148267634 -69769524 + ERVL LTR ERVL 1703 2503 -3021 1131 308 25 12 chr3 148267643 148268130 -69769028 + L1MEc LINE L1 1325 1817 -4579 1971 281 40 32 chr3 148268142 148269383 -69767775 + L1MEc LINE L1 1874 3087 -3128 574 240 0 71 chr3 148269414 148269443 -69767715 - MER58B DNA MER1_type -2079 341 312 3591 118 56 0 chr3 148269443 148269942 -69767216 + MER1A DNA MER1_type 1 527 0 574 240 0 71 chr3 148269942 148270109 -69767049 - MER58B DNA MER1_type -2108 312 162 766 120 9 9 chr3 148270414 148270522 -69766636 - FLAM_A SINE Alu -25 117 10 401 331 39 0 chr3 148270528 148270655 -69766503 + L2 LINE L2 3182 3313 0 968 237 66 4 chr3 148271149 148271406 -69765752 - L1ME3A LINE L1 -208 5962 5690 1006 89 73 52 chr3 148271588 148271779 -69765379 - MSTB2 LTR MaLR 0 457 263 450 308 13 25 chr3 148272109 148272268 -69764890 - MER5A DNA MER1_type -29 160 4 459 326 108 25 chr3 148272821 148273339 -69763819 + HAL1 LINE L1 1109 1669 -838 470 276 8 8 chr3 148273727 148273854 -69763304 - LTR16A1 LTR ERVL -12 445 319 28 105 0 0 chr3 148274784 148274889 -69762269 + AT_rich Low_complexity Low_complexity 1 105 0 435 314 54 5 chr3 148274984 148275188 -69761970 + L1MEc LINE L1 3742 3955 -2260 1014 163 0 0 chr3 148275188 148275335 -69761823 + FRAM SINE Alu 1 146 -30 22 0 0 0 chr3 148275335 148275357 -69761801 + AT_rich Low_complexity Low_complexity 1 22 0 8181 19 7 0 chr3 148275357 148276731 -69760427 - L1PA3 LINE L1 -3 6152 4782 797 287 138 70 chr3 148276751 148277078 -69760080 + L1MEc LINE L1 3934 4237 -1978 7780 132 25 15 chr3 148277078 148278295 -69758863 + Tigger3b DNA MER2_type 2 1231 0 797 287 138 70 chr3 148278295 148278466 -69758692 + L1MEc LINE L1 4237 4395 -1820 249 191 48 0 chr3 148278466 148278529 -69758629 + MLT1I LTR MaLR 324 389 -20 797 287 138 70 chr3 148278529 148279247 -69757911 + L1MEc LINE L1 4395 5300 -915 939 336 39 9 chr3 148279451 148279784 -69757374 + LTR16C LTR ERVL 148 490 -1 189 214 0 0 chr3 148280118 148280160 -69756998 + GA-rich Low_complexity Low_complexity 4 45 0 446 236 0 11 chr3 148280618 148280707 -69756451 + MLT1J LTR MaLR 107 194 -317 602 239 96 25 chr3 148281389 148281590 -69755568 - MIR SINE MIR -24 238 19 198 368 107 60 chr3 148282769 148283003 -69754155 - L2 LINE L2 -27 3245 3001 2220 99 0 7 chr3 148284349 148284651 -69752507 + AluSc SINE Alu 1 300 -9 2319 82 0 7 chr3 148285896 148286189 -69750969 - AluY SINE Alu -20 291 1 26 30 0 0 chr3 148287115 148287148 -69750010 + AT_rich Low_complexity Low_complexity 1 33 0 429 313 63 71 chr3 148287259 148287626 -69749532 - L2 LINE L2 0 3272 2909 2438 121 33 36 chr3 148288199 148288564 -69748594 + THE1B LTR MaLR 1 364 0 192 311 142 28 chr3 148288570 148288676 -69748482 - L2 LINE L2 -16 3256 3139 413 225 19 56 chr3 148290613 148290773 -69746385 - L1M4 LINE L1 -3428 2718 2565 637 270 19 13 chr3 148290869 148291028 -69746130 + MER5B DNA MER1_type 19 178 0 1014 192 40 5 chr3 148291116 148291314 -69745844 + MER3 DNA MER1_type 1 205 -4 2188 110 19 10 chr3 148291657 148291965 -69745193 + AluSq SINE Alu 1 311 -2 2253 114 0 0 chr3 148292348 148292647 -69744511 - AluSq SINE Alu -14 299 1 273 333 97 0 chr3 148294344 148294437 -69742721 + L2 LINE L2 3144 3245 -27 195 274 0 59 chr3 148295761 148295812 -69741346 - L2 LINE L2 -19 3253 3206 192 354 97 5 chr3 148295910 148296105 -69741053 - L2 LINE L2 -924 2390 2178 2661 30 0 3 chr3 148298075 148298375 -69738783 - L1PA7 LINE L1 -7 6147 5849 2933 57 32 14 chr3 148298375 148298428 -69738730 + L1P3 LINE L1 4963 5014 -1158 2374 101 3 0 chr3 148298428 148298735 -69738423 + AluSp SINE Alu 1 308 -5 2933 57 32 14 chr3 148298735 148299203 -69737955 + L1P3 LINE L1 5014 5492 -680 2590 176 39 60 chr3 148299204 148299270 -69737888 - L1MD2 LINE L1 0 6359 6293 1802 156 10 35 chr3 148299270 148299584 -69737574 + AluJo SINE Alu 1 306 -6 2590 176 39 60 chr3 148299584 148300136 -69737022 - L1MD2 LINE L1 -66 6293 5754 598 133 62 108 chr3 148300149 148300338 -69736820 - L1MDb LINE L1 -3949 2695 2499 185 0 40 0 chr3 148300338 148300363 -69736795 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2349 47 4 4 chr3 148300367 148300645 -69736513 - AluY SINE Alu -33 278 1 598 133 62 108 chr3 148300645 148300690 -69736468 - L1MDb LINE L1 -4148 2496 2467 747 188 0 31 chr3 148300690 148300818 -69736340 - FLAM_C SINE Alu -8 125 2 380 198 37 0 chr3 148300833 148300914 -69736244 - L1MDb LINE L1 -4371 2273 2190 798 146 146 46 chr3 148300914 148301065 -69736093 - FRAM SINE Alu -11 165 1 3575 195 78 40 chr3 148301066 148302414 -69734744 - L1MDb LINE L1 -4450 2194 762 752 298 40 58 chr3 148302566 148302895 -69734263 + MLT1I LTR MaLR 78 400 -9 833 256 5 9 chr3 148304042 148304257 -69732901 - L1MDb LINE L1 -6289 253 40 230 321 24 0 chr3 148304341 148304425 -69732733 - L2 LINE L2 -5 3308 3223 2072 132 0 3 chr3 148304784 148305071 -69732087 + AluSx SINE Alu 1 286 -26 2288 245 155 15 chr3 148305100 148305708 -69731450 + L1MB7 LINE L1 1061 1583 -4799 1996 129 27 14 chr3 148305708 148306003 -69731155 + AluSx SINE Alu 1 299 -13 2288 245 155 15 chr3 148306003 148306971 -69730187 + L1MB7 LINE L1 1583 2882 -3500 7211 218 48 30 chr3 148306981 148307099 -69730059 + L1MB7 LINE L1 3466 3581 -2839 2238 102 3 0 chr3 148307099 148307405 -69729753 + AluSp SINE Alu 1 307 0 7211 218 48 30 chr3 148307405 148309856 -69727302 + L1MB7 LINE L1 3581 6075 -345 3224 219 18 3 chr3 148311207 148311869 -69725289 + L1MC1 LINE L1 1 672 -5754 * 9111 194 40 7 chr3 148311865 148315020 -69722138 + L1MC1 LINE L1 3345 6609 -4 250 235 69 78 chr3 148315225 148315327 -69721831 - L2 LINE L2 -2 3270 3170 2664 145 31 17 chr3 148315346 148315766 -69721392 + MSTB LTR MaLR 1 426 0 484 200 0 0 chr3 148315988 148316073 -69721085 + MER45A DNA AcHobo 80 164 -14 1740 173 0 17 chr3 148316388 148316683 -69720475 - AluJo SINE Alu -22 290 1 2157 210 94 10 chr3 148316743 148317262 -69719896 - MER119 DNA MER1_type 0 583 21 198 321 8 82 chr3 148318461 148318595 -69718563 + MIR3 SINE MIR 64 187 -21 315 0 0 0 chr3 148319014 148319049 -69718109 + (CA)n Simple_repeat Simple_repeat 2 36 0 4445 136 8 42 chr3 148319099 148319811 -69717347 - LTR12 LTR ERV1 0 688 1 1782 207 14 11 chr3 148320691 148321054 -69716104 - MLT1A1 LTR MaLR 0 365 2 295 283 51 22 chr3 148322375 148322566 -69714592 - MIR SINE MIR -11 251 25 274 241 44 73 chr3 148322948 148323085 -69714073 - L2 LINE L2 0 3272 3140 190 229 114 99 chr3 148323434 148323565 -69713593 + MIR SINE MIR 12 144 -118 251 308 48 10 chr3 148326257 148326361 -69710797 + MIR SINE MIR 66 173 -89 219 69 0 0 chr3 148326861 148326890 -69710268 + (TA)n Simple_repeat Simple_repeat 2 30 0 1326 240 99 54 chr3 148327472 148327722 -69709436 + MLT1D LTR MaLR 1 238 -267 2359 100 40 54 chr3 148327722 148328092 -69709066 + MLT1A1 LTR MaLR 1 365 0 1326 240 99 54 chr3 148328092 148328324 -69708834 + MLT1D LTR MaLR 238 505 0 21 36 0 0 chr3 148328459 148328487 -69708671 + AT_rich Low_complexity Low_complexity 1 28 0 390 281 125 35 chr3 148328590 148328846 -69708312 - L1MC4a LINE L1 -1818 5990 5712 271 258 11 56 chr3 148329135 148329224 -69707934 - MIR SINE MIR -163 99 15 790 246 97 67 chr3 148329238 148329777 -69707381 - MLT1G1 LTR MaLR -3 552 16 195 42 0 0 chr3 148330024 148330048 -69707110 + (TG)n Simple_repeat Simple_repeat 2 25 0 1086 184 30 0 chr3 148331416 148331617 -69705541 + L1 LINE L1 5146 5352 -794 525 195 85 105 chr3 148332059 148332401 -69704757 + MER31B LTR ERV1 4 482 -3 2345 71 3 0 chr3 148333659 148333966 -69703192 - AluSp SINE Alu 0 308 1 3234 220 51 18 chr3 148334103 148335189 -69701969 + L1MD1 LINE L1 4924 6041 -201 245 143 48 0 chr3 148335189 148335231 -69701927 + MER3 DNA MER1_type 13 56 -153 236 209 0 0 chr3 148335231 148335274 -69701884 + L1MD1 LINE L1 6084 6126 -116 * 727 222 66 6 chr3 148335269 148335436 -69701722 - L1M3 LINE L1 -587 5596 5420 670 148 7 37 chr3 148335418 148335553 -69701605 + L1MD1 LINE L1 6111 6241 -1 * 215 235 20 0 chr3 148335685 148335736 -69701422 + MIR SINE MIR 104 155 -107 994 234 181 25 chr3 148335736 148336184 -69700974 - LTR40a LTR ERVL 0 519 2 212 228 35 0 chr3 148336248 148336305 -69700853 + MIR SINE MIR 198 256 -6 1974 108 4 0 chr3 148338380 148338638 -69698520 + AluSq SINE Alu 1 259 -54 372 43 0 0 chr3 148338664 148338710 -69698448 + (GGAA)n Simple_repeat Simple_repeat 4 49 0 1533 169 45 15 chr3 148338716 148339191 -69697967 + L1M3 LINE L1 99 558 -5624 3044 110 7 14 chr3 148339191 148339634 -69697524 + L1PB2 LINE L1 5703 6143 -8 1533 169 45 15 chr3 148339634 148339662 -69697496 + L1M3 LINE L1 558 5520 -662 1112 190 15 128 chr3 148339701 148340101 -69697057 + L1MC4 LINE L1 7026 7380 -662 298 263 11 11 chr3 148340102 148340197 -69696961 + L1MC4a LINE L1 7505 7599 -209 2376 256 36 42 chr3 148340217 148340430 -69696728 + L1ME1 LINE L1 5374 5587 -579 1460 136 9 0 chr3 148340430 148340643 -69696515 + L1MC1 LINE L1 6109 6323 -10 2376 256 36 42 chr3 148340643 148341119 -69696039 + L1ME1 LINE L1 5587 6060 -106 1965 101 80 14 chr3 148341119 148341405 -69695753 + AluSx SINE Alu 4 308 -4 2376 256 36 42 chr3 148341405 148341494 -69695664 + L1ME1 LINE L1 6060 6148 -18 211 315 0 14 chr3 148341786 148341859 -69695299 - MIR3 SINE MIR -7 201 130 229 234 13 65 chr3 148341980 148342057 -69695101 + L2 LINE L2 3233 3305 -8 2069 226 109 12 chr3 148342786 148343384 -69693774 - MER69B DNA AcHobo -3 1223 568 312 230 19 0 chr3 148343997 148344158 -69693000 + (TGG)n Simple_repeat Simple_repeat 2 165 0 280 274 26 0 chr3 148344162 148344275 -69692883 + G-rich Low_complexity Low_complexity 5 120 0 269 239 25 0 chr3 148344279 148344438 -69692720 + (TGG)n Simple_repeat Simple_repeat 3 165 0 182 226 16 16 chr3 148344454 148344578 -69692580 + (TGG)n Simple_repeat Simple_repeat 3 126 0 233 234 19 13 chr3 148344669 148344823 -69692335 + (TGG)n Simple_repeat Simple_repeat 2 156 0 198 234 23 0 chr3 148344844 148344972 -69692186 + (TGG)n Simple_repeat Simple_repeat 2 132 0 235 365 39 17 chr3 148345232 148345413 -69691745 + HAL1 LINE L1 1283 1467 -1040 5774 100 22 1 chr3 148346203 148347021 -69690137 - L1PB4 LINE L1 0 6156 5322 1343 147 5 0 chr3 148347021 148347219 -69689939 - AluJo SINE Alu -10 302 104 2236 155 38 40 chr3 148349833 148349950 -69687208 - LTR56 LTR ERV1 0 445 329 1821 147 11 4 chr3 148349950 148350251 -69686907 - AluJo SINE Alu 0 303 1 1473 206 43 13 chr3 148350253 148350434 -69686724 - AluJb SINE Alu -2 310 115 450 0 0 0 chr3 148350434 148350484 -69686674 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 1473 206 43 13 chr3 148350484 148350603 -69686555 - AluJb SINE Alu -197 115 1 2236 155 38 40 chr3 148350603 148350927 -69686231 - LTR56 LTR ERV1 -117 328 1 1574 231 17 74 chr3 148351143 148351670 -69685488 - MLT2B3 LTR ERVL -12 503 10 3076 179 39 73 chr3 148352097 148352845 -69684313 - MER72 LTR ERV1 0 722 1 209 111 0 0 chr3 148352924 148352951 -69684207 - L2 LINE L2 -36 3236 3210 2775 138 7 11 chr3 148353433 148353876 -69683282 + MER34C LTR ERV1 36 476 -109 770 217 7 0 chr3 148353906 148354049 -69683109 + Tigger3(Golem) DNA MER2_type 2885 3028 -1 351 151 139 12 chr3 148354056 148354142 -69683016 + MER34C LTR ERV1 488 584 -1 1672 164 67 71 chr3 148354143 148354564 -69682594 - MLT1D LTR MaLR -18 487 69 2479 121 62 17 chr3 148354585 148355005 -69682153 - LTR56 LTR ERV1 0 445 7 322 278 33 22 chr3 148354988 148355078 -69682080 - MLT1D LTR MaLR -413 92 2 * 780 244 194 19 chr3 148355083 148355398 -69681760 - L1ME3A LINE L1 -192 5978 5609 347 200 106 24 chr3 148355408 148355493 -69681665 - MER94 DNA DNA -4 130 39 840 93 9 0 chr3 148355571 148355678 -69681480 + AluSq/x SINE Alu 1 108 -205 2016 128 7 23 chr3 148355681 148355985 -69681173 + AluSx SINE Alu 1 299 -13 1676 278 75 40 chr3 148356016 148356920 -69680238 - L1ME3A LINE L1 -654 5516 4583 2536 107 42 62 chr3 148356925 148357037 -69680121 - LTR35 LTR ERV1 0 618 505 414 0 0 0 chr3 148357037 148357083 -69680075 + (GA)n Simple_repeat Simple_repeat 2 47 0 2536 107 42 62 chr3 148357083 148357525 -69679633 - LTR35 LTR ERV1 -113 505 1 528 322 0 0 chr3 148357900 148358046 -69679112 - MIR SINE MIR -115 147 2 2302 84 16 0 chr3 148358679 148358987 -69678171 + AluSq SINE Alu 1 313 0 248 298 0 29 chr3 148360293 148360397 -69676761 + T-rich Low_complexity Low_complexity 2 102 0 199 167 0 0 chr3 148360605 148360641 -69676517 - L2 LINE L2 0 3313 3278 876 150 0 0 chr3 148360954 148361087 -69676071 + FLAM_C SINE Alu 1 133 0 2076 96 7 0 chr3 148362234 148362542 -69674616 + AluSx SINE Alu 11 320 0 204 228 35 0 chr3 148362793 148362850 -69674308 - MIR SINE MIR -41 221 163 466 212 146 15 chr3 148362852 148362869 -69674289 - L1MA10 LINE L1 0 6334 6318 2914 239 56 28 chr3 148362869 148363100 -69674058 - L1ME2 LINE L1 -9 6549 6326 2273 111 0 0 chr3 148363100 148363406 -69673752 - AluSx SINE Alu -6 306 1 2914 239 56 28 chr3 148363406 148363985 -69673173 - L1ME2 LINE L1 -232 6326 5685 1854 147 0 41 chr3 148363985 148364277 -69672881 - AluSx SINE Alu -32 280 1 2914 239 56 28 chr3 148364277 148364525 -69672633 - L1ME2 LINE L1 -873 5685 5445 846 124 0 0 chr3 148364529 148364642 -69672516 + AluJb SINE Alu 5 117 -195 566 202 64 49 chr3 148364656 148364859 -69672299 - L1ME2 LINE L1 -1082 5458 5253 2869 254 93 28 chr3 148364945 148365816 -69671342 + L1MD2 LINE L1 176 1103 -5437 * 3131 199 100 22 chr3 148365812 148366752 -69670406 + L1MD2 LINE L1 1367 2379 -4161 2870 257 62 13 chr3 148366769 148367712 -69669446 + L1MD2 LINE L1 3965 4953 -1587 907 194 0 0 chr3 148367713 148367878 -69669280 + FRAM SINE Alu 1 165 -11 3243 173 86 52 chr3 148367878 148368127 -69669031 + L1MD2 LINE L1 5757 5996 -640 2065 129 24 0 chr3 148368127 148368414 -69668744 + AluSx SINE Alu 1 294 -18 3243 173 86 52 chr3 148368414 148369056 -69668102 + L1MD2 LINE L1 5996 6621 -15 305 177 234 32 chr3 148369049 148369173 -69667985 - L1ME2 LINE L1 -1283 5257 5109 * 246 333 31 23 chr3 148369184 148369313 -69667845 - MIR SINE MIR -114 148 19 349 240 0 58 chr3 148369383 148369487 -69667671 + MER5A DNA MER1_type 9 106 -83 2540 43 7 0 chr3 148369523 148369824 -69667334 + AluY SINE Alu 1 303 -8 664 214 130 0 chr3 148370167 148370359 -69666799 - L1ME2 LINE L1 -4708 1832 1616 323 157 34 112 chr3 148370361 148370450 -69666708 + MLT1D LTR MaLR 3 84 -421 807 139 95 0 chr3 148370473 148370610 -69666548 + AluJb SINE Alu 141 290 -22 1165 226 116 58 chr3 148370620 148371018 -69666140 + MLT1D LTR MaLR 85 505 0 1853 193 69 41 chr3 148371023 148371137 -69666021 - L1ME2 LINE L1 -4925 1615 1506 1979 142 3 10 chr3 148371137 148371448 -69665710 - AluSx SINE Alu -3 309 1 1853 193 69 41 chr3 148371448 148371941 -69665217 - L1ME2 LINE L1 -5034 1506 991 552 322 125 34 chr3 148372151 148372598 -69664560 - L1ME2 LINE L1 -5843 697 210 332 299 43 34 chr3 148372964 148373081 -69664077 + MIR SINE MIR 39 156 -106 306 213 80 27 chr3 148375620 148375695 -69661463 - L2 LINE L2 -8 3264 3186 22 0 0 0 chr3 148377155 148377177 -69659981 + AT_rich Low_complexity Low_complexity 1 22 0 1837 166 78 0 chr3 148377264 148377583 -69659575 - MER2 DNA MER2_type 0 344 1 2154 117 0 17 chr3 148377780 148378078 -69659080 + AluSg SINE Alu 1 293 -17 327 179 0 0 chr3 148378152 148378219 -69658939 + GA-rich Low_complexity Low_complexity 2 68 0 709 266 110 84 chr3 148378409 148378768 -69658390 + L1MC4a LINE L1 5427 5804 -2004 2143 113 3 0 chr3 148378768 148379059 -69658099 - AluSx SINE Alu -20 292 1 709 266 110 84 chr3 148379059 148379200 -69657958 + L1MC4a LINE L1 5804 5940 -1868 2052 137 46 58 chr3 148379263 148379658 -69657500 - MLT1B LTR MaLR 0 390 1 289 357 35 42 chr3 148380766 148380909 -69656249 - L2 LINE L2 -5 3267 3126 231 237 40 53 chr3 148381997 148382073 -69655085 + L2 LINE L2 3222 3296 -17 2309 204 28 76 chr3 148382420 148382784 -69654374 + LTR9 LTR ERV1 1 322 -290 4625 97 4 106 chr3 148382784 148383550 -69653608 - LTR12 LTR ERV1 0 688 1 2309 204 28 76 chr3 148383550 148383828 -69653330 + LTR9 LTR ERV1 322 612 0 405 0 0 0 chr3 148383861 148383906 -69653252 + (TG)n Simple_repeat Simple_repeat 2 46 0 638 209 12 61 chr3 148384092 148384255 -69652903 - MER31B LTR ERV1 -60 406 252 350 134 317 0 chr3 148384254 148384336 -69652822 - MER31B LTR ERV1 -358 108 1 * 2205 207 179 24 chr3 148385904 148386585 -69650573 + LTR48 LTR ERV1 1 787 0 273 280 80 0 chr3 148386662 148386737 -69650421 + MLT1I LTR MaLR 132 212 -197 2002 150 105 18 chr3 148387475 148387874 -69649284 + L1MA7 LINE L1 5849 6282 -9 1524 173 17 53 chr3 148387953 148388253 -69648905 + AluJo SINE Alu 1 289 -23 1466 265 102 18 chr3 148388253 148388819 -69648339 - L1M4 LINE L1 -1072 5143 4530 1976 196 25 15 chr3 148388821 148389224 -69647934 - MLT2D LTR ERVL -2 412 6 5823 155 58 12 chr3 148389227 148389451 -69647707 - ERVL-D LTR ERVL -5 5759 5547 2422 147 3 0 chr3 148389451 148389797 -69647361 + MER7A DNA MER2_type 1 345 -1 5823 155 58 12 chr3 148389797 148390608 -69646550 - ERVL-D LTR ERVL -217 5547 4676 2755 133 0 17 chr3 148390606 148391028 -69646130 - ERVL-D LTR ERVL -1243 4521 4107 * 894 269 66 34 chr3 148391032 148391628 -69645530 - L1MCa LINE L1 -3556 2659 2039 425 292 25 15 chr3 148391731 148391933 -69645225 - L1MCa LINE L1 -4329 2067 1864 3697 183 64 25 chr3 148392499 148393380 -69643778 - Charlie1a DNA MER1_type 0 1455 541 678 257 87 75 chr3 148393380 148393917 -69643241 - LTR48 LTR ERV1 0 787 1 2324 210 59 28 chr3 148393918 148394446 -69642712 - Charlie1a DNA MER1_type -911 544 1 1854 180 19 83 chr3 148395039 148395462 -69641696 + MSTD LTR MaLR 1 396 0 198 0 0 0 chr3 148395720 148395742 -69641416 + (CA)n Simple_repeat Simple_repeat 1 22 0 1391 175 109 0 chr3 148395773 148396057 -69641101 - MLT2C2 LTR ERVL -83 381 1 286 333 65 8 chr3 148396503 148396626 -69640532 + MIR SINE MIR 2 131 -131 1739 238 45 58 chr3 148396652 148396718 -69640440 + L1MDa LINE L1 2 67 -6473 2297 119 0 0 chr3 148396718 148397028 -69640130 - AluSx SINE Alu -2 310 1 1739 238 45 58 chr3 148397028 148397512 -69639646 + L1MDa LINE L1 67 545 -5995 3436 233 61 25 chr3 148397957 148399098 -69638060 + L1M4 LINE L1 3237 4413 -1733 * 3730 240 101 48 chr3 148399080 148399170 -69637988 + L1MD2 LINE L1 37 121 -5924 2112 101 6 19 chr3 148399170 148399452 -69637706 + AluSp SINE Alu 1 280 -33 185 0 0 39 chr3 148399452 148399478 -69637680 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2112 101 6 19 chr3 148399478 148399512 -69637646 + AluSp SINE Alu 280 313 0 3730 240 101 48 chr3 148399512 148400370 -69636788 + L1MD2 LINE L1 121 960 -5085 1760 162 61 14 chr3 148400370 148400715 -69636443 - MER46B DNA MER2_type 0 236 1 3730 240 101 48 chr3 148400715 148400901 -69636257 + L1MD2 LINE L1 960 1135 -4910 6113 103 9 0 chr3 148401030 148401990 -69635168 - L1PA13 LINE L1 -4 6159 5185 4580 171 10 0 chr3 148401993 148402812 -69634346 - L1PA13 LINE L1 -1131 5015 4189 1919 190 109 4 chr3 148402811 148403269 -69633889 + L1MD2 LINE L1 1125 1630 -4934 * 3677 229 78 44 chr3 148403273 148405154 -69632004 + L1MD2 LINE L1 4819 6765 -12 1868 124 7 36 chr3 148405156 148405463 -69631695 + AluSg SINE Alu 1 298 -12 235 286 0 0 chr3 148405642 148405698 -69631460 - MLT1L LTR MaLR -4 611 556 232 231 187 11 chr3 148405718 148405809 -69631349 + LTR33 LTR ERVL 2 108 -413 280 245 75 0 chr3 148406198 148406292 -69630866 - MLT1L LTR MaLR -76 539 439 1829 209 23 16 chr3 148407186 148407573 -69629585 + MLT2D LTR ERVL 23 412 -2 334 309 64 25 chr3 148407575 148407811 -69629347 + L1M4 LINE L1 4461 4705 -1441 620 282 96 25 chr3 148407818 148408141 -69629017 + L1M4 LINE L1 4729 5074 -1072 331 280 7 0 chr3 148408143 148408234 -69628924 - FRAM SINE Alu -31 135 56 2364 199 82 21 chr3 148408336 148408688 -69628470 + ERVL-D LTR ERVL 5148 5550 -214 2007 184 3 0 chr3 148408688 148409031 -69628127 - MER7A DNA MER2_type -4 342 1 2364 199 82 21 chr3 148409031 148409255 -69627903 + ERVL-D LTR ERVL 5550 5759 -5 537 264 21 0 chr3 148409258 148409398 -69627760 + MLT2D LTR ERVL 6 148 -266 1691 132 0 7 chr3 148410750 148411022 -69626136 - HERVK9 LTR ERVK -4022 1894 1625 2625 212 32 43 chr3 148411022 148411813 -69625345 - HERVK9 LTR ERVK -5254 662 104 417 329 40 18 chr3 148412408 148412630 -69624528 + MIR SINE MIR 11 237 -25 376 293 138 0 chr3 148413121 148413309 -69623849 + LTR16C LTR ERVL 240 453 -38 345 287 85 37 chr3 148414749 148414913 -69622245 + MIR SINE MIR 35 206 -56 214 322 0 11 chr3 148415002 148415092 -69622066 + (CATG)n Simple_repeat Simple_repeat 3 91 0 * 258 259 12 12 chr3 148415054 148415139 -69622019 + (TCCA)n Simple_repeat Simple_repeat 4 88 0 223 278 44 56 chr3 148415969 148416059 -69621099 + L2 LINE L2 3181 3269 -3 1083 149 5 45 chr3 148416073 148416226 -69620932 + Tigger2 DNA MER2_type 6 151 -2567 1375 194 9 69 chr3 148416226 148416545 -69620613 + AluJb SINE Alu 1 300 -2 1083 149 5 45 chr3 148416545 148416592 -69620566 + Tigger2 DNA MER2_type 151 198 -2520 759 100 123 29 chr3 148416724 148416894 -69620264 - MER53 DNA DNA 0 189 4 403 223 54 54 chr3 148416906 148417018 -69620140 - Charlie4 DNA MER1_type -1812 149 38 333 314 107 8 chr3 148417340 148417461 -69619697 + L2 LINE L2 3176 3308 -5 1330 128 0 0 chr3 148417599 148417802 -69619356 + AluSg SINE Alu 2 204 -106 3430 196 39 11 chr3 148417903 148418603 -69618555 - ERVL LTR ERVL -371 5393 4675 1310 260 0 21 chr3 148418600 148418938 -69618220 - ERVL LTR ERVL -1243 4521 4191 * 6140 158 1 5 chr3 148420333 148421341 -69615817 + HERVK9 LTR ERVK 1883 2886 -3030 2330 188 42 12 chr3 148421441 148421937 -69615221 - MER6A DNA MER2_type -93 512 2 388 310 0 3 chr3 148421942 148422272 -69614886 + (CA)n Simple_repeat Simple_repeat 1 328 0 1521 262 74 28 chr3 148422853 148423391 -69613767 - MER45B DNA AcHobo -477 563 1 279 148 33 0 chr3 148424152 148424213 -69612945 - L1M4 LINE L1 -2845 3301 3239 1174 292 56 27 chr3 148424660 148425143 -69612015 - L1MDa LINE L1 -5995 545 49 1006 144 0 0 chr3 148425144 148425297 -69611861 + AluSx SINE Alu 1 153 -159 992 225 43 52 chr3 148426009 148426338 -69610820 - MER1B DNA MER1_type -13 326 1 498 17 0 0 chr3 148426360 148426419 -69610739 + (TA)n Simple_repeat Simple_repeat 2 60 0 789 276 138 8 chr3 148426841 148427211 -69609947 + L1MCa LINE L1 1070 1487 -4939 737 270 72 94 chr3 148427220 148427998 -69609160 + L1M4 LINE L1 4401 5161 -985 1465 206 19 83 chr3 148428313 148428736 -69608422 - MSTD LTR MaLR 0 396 1 1151 246 63 71 chr3 148429335 148429844 -69607314 + Charlie1a DNA MER1_type 5 509 -946 2343 152 9 14 chr3 148429964 148430384 -69606774 - L1MB3 LINE L1 -178 6005 5588 212 175 25 0 chr3 148431022 148431062 -69606096 + GA-rich Low_complexity Low_complexity 5 45 0 588 329 62 50 chr3 148433133 148433920 -69603238 - L1M4 LINE L1 -1319 4827 4022 1259 232 31 7 chr3 148433920 148434213 -69602945 - AluJo SINE Alu -2 300 1 588 329 62 50 chr3 148434213 148434490 -69602668 - L1M4 LINE L1 -2124 4022 3750 429 54 0 0 chr3 148434506 148434562 -69602596 + (TG)n Simple_repeat Simple_repeat 2 57 0 271 268 72 36 chr3 148436224 148436362 -69600796 + MER67A LTR ERV1 401 543 0 1294 206 27 10 chr3 148437190 148437491 -69599667 - AluJo SINE Alu -1 311 6 9203 172 14 1 chr3 148438530 148440137 -69597021 - HERVK9 LTR ERVK -955 4961 3335 188 208 0 104 chr3 148440905 148440953 -69596205 - L3 LINE CR1 -507 1070 1028 393 183 0 14 chr3 148441337 148441408 -69595750 + AluJ/FLAM SINE Alu 1 70 -232 497 194 0 0 chr3 148441508 148441611 -69595547 + L1MA7 LINE L1 6187 6289 -2 272 302 9 35 chr3 148442375 148442491 -69594667 + MIR SINE MIR 33 145 -117 517 274 61 61 chr3 148443981 148444193 -69592965 - L2 LINE L2 -24 3289 3078 234 331 16 39 chr3 148445058 148445185 -69591973 - L2 LINE L2 -465 2849 2726 596 267 17 6 chr3 148445188 148445360 -69591798 + L1M3b LINE L1 1 174 -6107 435 241 0 23 chr3 148445389 148445432 -69591726 + L1M3b LINE L1 1547 1589 -4692 2074 135 0 0 chr3 148445432 148445735 -69591423 + AluSx SINE Alu 1 303 -9 435 241 0 23 chr3 148445735 148445824 -69591334 + L1M3b LINE L1 1589 1676 -4605 1919 40 0 28 chr3 148445924 148446172 -69590986 + L1PA4 LINE L1 5915 6155 0 738 228 6 6 chr3 148446211 148446369 -69590789 + FRAM SINE Alu 1 158 -8 1336 239 82 57 chr3 148446373 148446900 -69590258 + MLT1F LTR MaLR 1 540 -2 1864 110 59 3 chr3 148448715 148449005 -69588153 + AluSx SINE Alu 3 308 -4 1640 167 114 28 chr3 148449163 148449301 -69587857 + MER2 DNA MER2_type 2 127 -218 2204 125 9 29 chr3 148449301 148449645 -69587513 - MER1B DNA MER1_type 0 337 1 1640 167 114 28 chr3 148449645 148449823 -69587335 + MER2 DNA MER2_type 127 345 0 229 197 141 0 chr3 148450158 148450229 -69586929 + MER103 DNA DNA 61 141 -25 10304 159 50 51 chr3 148450802 148453024 -69584134 + HERVK9 LTR ERVK 3680 5900 -16 1927 204 84 13 chr3 148453068 148453530 -69583628 + MER9 LTR ERVK 17 511 0 1795 193 69 41 chr3 148454208 148454701 -69582457 + L1MDb LINE L1 991 1506 -5034 1875 142 3 10 chr3 148454701 148455012 -69582146 + AluSx SINE Alu 1 309 -3 1795 193 69 41 chr3 148455012 148455126 -69582032 + L1MDb LINE L1 1506 1615 -4925 1187 226 116 58 chr3 148455131 148455529 -69581629 - MLT1D LTR MaLR 0 505 85 759 139 95 0 chr3 148455539 148455676 -69581482 - AluJb SINE Alu -22 290 141 240 246 33 0 chr3 148455693 148455754 -69581404 - MLT1D LTR MaLR -416 89 27 624 219 130 0 chr3 148455790 148455982 -69581176 + L1MDb LINE L1 1616 1832 -4708 1643 162 7 0 chr3 148456334 148456643 -69580515 - AluY SINE Alu 0 311 1 1834 122 4 14 chr3 148458138 148458416 -69578742 + AluSx SINE Alu 34 308 -4 1906 169 107 58 chr3 148458584 148459070 -69578088 + LTR54 LTR ERV1 1 510 0 376 167 0 0 chr3 148459159 148459222 -69577936 + Alu SINE Alu 1 53 -255 454 189 0 11 chr3 148459224 148459314 -69577844 + AluJo/FRAM SINE Alu 160 248 -64 24 0 0 0 chr3 148459314 148459338 -69577820 + AT_rich Low_complexity Low_complexity 1 24 0 1768 124 7 2 chr3 148459508 148460045 -69577113 - L1PA13 LINE L1 0 6163 5393 234 0 0 0 chr3 148460190 148460216 -69576942 + (TCCC)n Simple_repeat Simple_repeat 2 27 0 785 236 6 6 chr3 148460216 148460381 -69576777 - AluJo SINE Alu -13 299 135 522 210 32 17 chr3 148460381 148460550 -69576608 - MER4D LTR ERV1 -529 343 62 * 1237 174 91 62 chr3 148460544 148460819 -69576339 - MER49 LTR ERV1 -640 283 1 470 177 42 10 chr3 148460902 148460998 -69576160 + MER72 LTR ERV1 1 99 -623 263 93 23 0 chr3 148461007 148461050 -69576108 + (TTCC)n Simple_repeat Simple_repeat 2 45 0 1694 121 39 4 chr3 148461050 148461307 -69575851 - AluSx SINE Alu -44 268 3 2429 153 55 9 chr3 148461308 148461747 -69575411 + MER72 LTR ERV1 264 722 0 209 297 89 40 chr3 148461831 148461932 -69575226 - L2 LINE L2 -8 3264 3159 1586 221 0 3 chr3 148462516 148462814 -69574344 + MLT2B1 LTR ERVL 7 303 -217 4805 129 4 9 chr3 148462817 148463552 -69573606 + LTR17 LTR ERV1 1 731 -49 244 220 33 33 chr3 148463974 148464065 -69573093 + (TA)n Simple_repeat Simple_repeat 1 91 0 2089 105 10 0 chr3 148464089 148464385 -69572773 - AluSp SINE Alu -14 299 1 24 0 0 0 chr3 148464434 148464458 -69572700 + AT_rich Low_complexity Low_complexity 1 24 0 647 232 58 78 chr3 148464468 148464761 -69572397 + L1ME2 LINE L1 5734 6020 -144 234 118 0 0 chr3 148464761 148464795 -69572363 + MER3 DNA MER1_type 16 49 -160 392 148 30 89 chr3 148464801 148464902 -69572256 + L1ME3 LINE L1 6061 6155 -7 382 202 9 9 chr3 148465562 148465671 -69571487 + CT-rich Low_complexity Low_complexity 1 109 0 2803 165 34 41 chr3 148465722 148466325 -69570833 - MER4D LTR ERV1 0 903 51 645 219 0 7 chr3 148466345 148466482 -69570676 - AluJo SINE Alu -175 137 2 255 204 0 0 chr3 148466505 148466559 -69570599 + CT-rich Low_complexity Low_complexity 2 55 0 999 227 36 0 chr3 148466564 148466811 -69570347 - AluSx SINE Alu -53 259 4 381 244 104 0 chr3 148466814 148466949 -69570209 + MER72 LTR ERV1 268 416 -306 1133 183 23 0 chr3 148467049 148467268 -69569890 + L1MB3 LINE L1 5911 6134 -49 1951 140 7 3 chr3 148467788 148468095 -69569063 - AluSx SINE Alu -4 308 1 205 336 60 8 chr3 148468195 148468329 -69568829 + MIR SINE MIR 1 141 -121 292 260 71 39 chr3 148468798 148468952 -69568206 - MER67A LTR ERV1 0 543 385 4709 213 51 48 chr3 148470133 148470908 -69566250 + L1MB1 LINE L1 2030 2801 -3603 2089 118 9 15 chr3 148470908 148471239 -69565919 - L1MA1 LINE L1 0 6302 5974 4709 213 51 48 chr3 148471239 148473848 -69563310 + L1MB1 LINE L1 2801 6129 -275 297 111 56 0 chr3 148473849 148473903 -69563255 + L1MA10 LINE L1 6278 6334 0 2269 186 16 99 chr3 148474321 148474621 -69562537 + MLT2B1 LTR ERVL 7 248 -272 5256 105 33 8 chr3 148474621 148475382 -69561776 + LTR17 LTR ERV1 1 780 0 2269 186 16 99 chr3 148475382 148475598 -69561560 + MLT2B1 LTR ERVL 248 480 -40 1041 249 126 6 chr3 148475678 148476004 -69561154 - MLT1I LTR MaLR -4 405 41 184 298 18 18 chr3 148476809 148476866 -69560292 - L2 LINE L2 -1407 1907 1851 2106 87 37 0 chr3 148476940 148477239 -69559919 + AluSg SINE Alu 1 310 0 300 226 16 0 chr3 148477745 148477807 -69559351 + HAL1 LINE L1 2 64 -2443 329 226 85 0 chr3 148478316 148478422 -69558736 + HAL1 LINE L1 797 911 -1596 716 163 0 43 chr3 148478519 148478660 -69558498 + FLAM_C SINE Alu 2 136 -7 1214 237 99 63 chr3 148478663 148479251 -69557907 + HAL1 LINE L1 1043 1667 -840 1246 233 106 32 chr3 148479251 148479685 -69557473 + MER31B LTR ERV1 1 466 0 1214 237 99 63 chr3 148479685 148479873 -69557285 + HAL1 LINE L1 1667 1847 -660 280 234 13 39 chr3 148479938 148480015 -69557143 + MER63 DNA MER1_type 31 731 -105 239 309 12 12 chr3 148480014 148480098 -69557060 + MER63 DNA MER1_type 972 1055 -5 * 241 252 130 80 chr3 148480113 148480375 -69556783 + HAL1 LINE L1 1930 2204 -303 270 181 38 76 chr3 148480787 148480892 -69556266 - L1MB2 LINE L1 -1 6170 6070 444 261 35 109 chr3 148481043 148481103 -69556055 - L1M4 LINE L1 -2085 4061 3998 1621 175 31 3 chr3 148481103 148481395 -69555763 - AluJb SINE Alu -12 300 1 444 261 35 109 chr3 148481395 148481682 -69555476 - L1M4 LINE L1 -2148 3998 3740 435 52 0 0 chr3 148481686 148481744 -69555414 + (TG)n Simple_repeat Simple_repeat 2 59 0 303 241 12 24 chr3 148481889 148481972 -69555186 - L1M4 LINE L1 -2615 3531 3450 2269 190 56 86 chr3 148481974 148482836 -69554322 - L1MC5 LINE L1 -582 7379 6546 2232 183 38 31 chr3 148483126 148483575 -69553583 - MSTB2 LTR MaLR 0 457 6 1864 199 107 7 chr3 148483580 148483993 -69553165 - MER82 DNA MER2_type -1 652 199 962 209 25 0 chr3 148484545 148484741 -69552417 - MER82 DNA MER2_type -449 204 4 475 29 44 0 chr3 148484756 148484824 -69552334 + (TCTA)n Simple_repeat Simple_repeat 1 71 0 1946 134 36 39 chr3 148484844 148485179 -69551979 + MER1B DNA MER1_type 1 334 -3 747 125 108 0 chr3 148486229 148486349 -69550809 - FLAM_C SINE Alu 0 133 1 203 125 25 0 chr3 148487555 148487595 -69549563 + CT-rich Low_complexity Low_complexity 5 45 0 3024 128 81 16 chr3 148488232 148488789 -69548369 + L1MB3 LINE L1 5588 6180 -3 889 158 0 0 chr3 148489114 148489247 -69547911 - FLAM_C SINE Alu 0 133 1 246 360 0 9 chr3 148489696 148489810 -69547348 + L1MC5 LINE L1 7314 7426 -535 490 261 81 77 chr3 148489850 148490143 -69547015 + L1MC4 LINE L1 7610 7908 -134 2027 125 0 0 chr3 148490143 148490444 -69546714 + AluSx SINE Alu 1 301 0 490 261 81 77 chr3 148490444 148490579 -69546579 + L1MC4 LINE L1 7908 8041 -1 1633 157 0 30 chr3 148490968 148491267 -69545891 + AluJo SINE Alu 22 311 -1 428 179 75 57 chr3 148491273 148491379 -69545779 + FLAM_C SINE Alu 2 109 -34 349 241 158 30 chr3 148491521 148491654 -69545504 + MER31A LTR ERV1 336 485 0 426 231 81 48 chr3 148491656 148491842 -69545316 + HAL1 LINE L1 1656 1847 -660 334 224 13 26 chr3 148491907 148491983 -69545175 + MER63 DNA MER1_type 31 731 -331 297 301 12 0 chr3 148491982 148492065 -69545093 + MER63 DNA MER1_type 974 1057 -5 * 346 229 244 65 chr3 148492080 148492481 -69544677 + HAL1 LINE L1 1930 2402 -105 222 184 0 0 chr3 148492712 148492750 -69544408 + CT-rich Low_complexity Low_complexity 2 39 0 3761 147 26 70 chr3 148492751 148493526 -69543632 - L1MB3 LINE L1 0 6183 5443 1937 150 20 0 chr3 148494109 148494415 -69542743 - AluSq SINE Alu -1 312 1 1012 156 112 5 chr3 148494421 148494626 -69542532 - L1MA5 LINE L1 -230 6070 5844 414 241 0 60 chr3 148495021 148495137 -69542021 - L2 LINE L2 0 3313 3205 191 299 43 0 chr3 148495424 148495541 -69541617 - L2 LINE L2 -732 2582 2461 2212 82 0 3 chr3 148496364 148496646 -69540512 - AluSg SINE Alu -29 281 1 397 302 103 8 chr3 148496778 148496904 -69540254 - L2 LINE L2 0 3313 3176 1363 233 70 43 chr3 148497226 148497350 -69539808 + Charlie4a DNA MER1_type 38 157 -1804 794 94 123 29 chr3 148497350 148497520 -69539638 + MER53 DNA DNA 4 189 0 1363 233 70 43 chr3 148497520 148497838 -69539320 + Charlie4a DNA MER1_type 157 492 -16 200 184 20 0 chr3 148498407 148498456 -69538702 + CT-rich Low_complexity Low_complexity 1 50 0 188 208 21 21 chr3 148498750 148498798 -69538360 + L2 LINE L2 3225 3272 0 490 335 50 5 chr3 148499020 148499241 -69537917 + MIR SINE MIR 7 237 -25 378 0 0 0 chr3 148499616 148499658 -69537500 + (TG)n Simple_repeat Simple_repeat 2 43 0 1245 153 5 60 chr3 148500651 148501017 -69536141 + AluSg/x SINE Alu 83 308 -2 1163 185 29 0 chr3 148502303 148502508 -69534650 + MLT1A1 LTR MaLR 155 365 0 216 226 0 0 chr3 148502552 148502614 -69534544 + (TG)n Simple_repeat Simple_repeat 1 62 0 1541 75 0 5 chr3 148502642 148502843 -69534315 - AluSq SINE Alu -26 287 88 4616 162 16 42 chr3 148503029 148503687 -69533471 + L1MB2 LINE L1 5291 5920 -251 928 125 0 0 chr3 148503687 148503815 -69533343 + FLAM_C SINE Alu 1 128 -5 4616 162 16 42 chr3 148503815 148504056 -69533102 + L1MB2 LINE L1 5920 6166 -5 263 253 51 25 chr3 148504397 148504476 -69532682 - MER5B DNA MER1_type -97 81 1 1486 106 0 5 chr3 148504599 148504816 -69532342 + AluSq SINE Alu 88 303 -10 198 71 0 0 chr3 148505086 148505114 -69532044 + (TTG)n Simple_repeat Simple_repeat 1 28 0 197 163 25 25 chr3 148505643 148505723 -69531435 + (TGGA)n Simple_repeat Simple_repeat 1 80 0 347 291 85 36 chr3 148505863 148506028 -69531130 - MIR SINE MIR -55 207 35 1624 185 28 69 chr3 148507161 148507551 -69529607 - MLT1A2 LTR MaLR 0 374 1 1589 162 152 52 chr3 148507574 148507771 -69529387 + MLT2B1 LTR ERVL 2 178 -342 564 42 0 0 chr3 148507771 148507842 -69529316 + (TCTCC)n Simple_repeat Simple_repeat 5 75 0 1589 162 152 52 chr3 148507842 148508075 -69529083 + MLT2B1 LTR ERVL 178 520 0 294 323 140 12 chr3 148508090 148508380 -69528778 + L1ME3 LINE L1 5621 5951 -211 1680 147 10 3 chr3 148508713 148509006 -69528152 - AluSp SINE Alu -18 295 1 22 0 0 0 chr3 148509057 148509079 -69528079 + AT_rich Low_complexity Low_complexity 1 22 0 1009 227 55 85 chr3 148509086 148509522 -69527636 + L1ME2 LINE L1 5731 6153 -11 11531 176 14 10 chr3 148510208 148512394 -69524764 - L1P LINE L1 -1096 5050 2856 756 288 96 9 chr3 148513355 148513699 -69523459 + LTR16A LTR ERVL 60 433 -17 250 194 28 0 chr3 148514010 148514082 -69523076 + (TATATG)n Simple_repeat Simple_repeat 5 78 0 267 190 0 0 chr3 148514166 148514224 -69522934 + (TG)n Simple_repeat Simple_repeat 2 59 0 264 327 59 83 chr3 148514927 148515334 -69521824 - L2 LINE L2 -49 3223 2827 2083 105 3 0 chr3 148515422 148515716 -69521442 - AluSx SINE Alu -17 295 1 1120 131 50 54 chr3 148515756 148515922 -69521236 - L1MA3 LINE L1 -1 6304 6138 2303 77 0 0 chr3 148515922 148516222 -69520936 - AluY SINE Alu -11 300 1 1120 131 50 54 chr3 148516222 148516277 -69520881 - L1MA3 LINE L1 -167 6138 6084 1386 249 115 38 chr3 148516509 148516978 -69520180 + L1ME1 LINE L1 5432 5936 -230 395 179 0 0 chr3 148517032 148517110 -69520048 + L1MA10 LINE L1 6243 6320 -14 1369 131 146 15 chr3 148517187 148517454 -69519704 - AluSx SINE Alu -10 302 1 1502 190 27 64 chr3 148517596 148518001 -69519157 - MLT1B LTR MaLR 0 390 1 814 148 23 8 chr3 148518046 148518174 -69518984 + AluJo SINE Alu 6 135 -177 2024 206 84 13 chr3 148518573 148519050 -69518108 + MER9 LTR ERVK 1 511 0 3295 186 44 47 chr3 148519055 148519946 -69517212 + HERVK14 LTR ERVK 9 874 -5071 14179 114 11 5 chr3 148519946 148521978 -69515180 + HERVK14 LTR ERVK 1625 3668 -2248 451 256 11 0 chr3 148522079 148522169 -69514989 - MER2 DNA MER2_type -253 92 2 305 215 25 51 chr3 148522505 148522584 -69514574 + U6 snRNA snRNA 9 85 -22 629 280 44 0 chr3 148523150 148523332 -69513826 - MER63A DNA MER1_type 0 210 21 353 319 9 0 chr3 148523657 148523770 -69513388 - L1ME LINE L1 -468 5653 5540 356 266 60 70 chr3 148524004 148524053 -69513105 + L1ME4a LINE L1 5629 5677 -444 1934 127 28 3 chr3 148524053 148524344 -69512814 + AluSx SINE Alu 1 298 -14 356 266 60 70 chr3 148524344 148524595 -69512563 + L1ME4a LINE L1 5677 5926 -195 21 57 0 0 chr3 148524621 148524656 -69512502 + AT_rich Low_complexity Low_complexity 1 35 0 1994 143 0 3 chr3 148524924 148525225 -69511933 - AluSx SINE Alu -12 300 1 2353 217 77 74 chr3 148526826 148527668 -69509490 + MER45B DNA AcHobo 1 845 -195 456 275 135 0 chr3 148527672 148527865 -69509293 + LTR16C LTR ERVL 241 459 -32 1752 213 84 55 chr3 148530011 148530536 -69506622 - MLT1F LTR MaLR -2 540 1 937 196 0 0 chr3 148530540 148530698 -69506460 - FRAM SINE Alu -8 158 1 6760 27 0 0 chr3 148530745 148531520 -69505638 - L1PA4 LINE L1 -2 6153 5379 269 247 0 12 chr3 148531681 148531762 -69505396 + (CA)n Simple_repeat Simple_repeat 1 80 0 3067 160 62 0 chr3 148531762 148532331 -69504827 - MER6A DNA MER2_type 0 605 2 496 282 0 3 chr3 148532336 148532666 -69504492 + (CA)n Simple_repeat Simple_repeat 1 328 0 187 329 80 51 chr3 148533596 148533733 -69503425 - L2 LINE L2 -5 3267 3127 2147 105 0 0 chr3 148533880 148534186 -69502972 + AluSx SINE Alu 1 306 -6 3204 202 28 8 chr3 148534212 148534881 -69502277 + L1MB3 LINE L1 5450 6132 -51 22 0 0 0 chr3 148537206 148537228 -69499930 + AT_rich Low_complexity Low_complexity 1 22 0 3419 208 23 23 chr3 148537229 148537503 -69499655 - L1MB3 LINE L1 -9 6174 5901 2276 84 3 0 chr3 148537503 148537801 -69499357 - AluSq SINE Alu -14 299 1 3419 208 23 23 chr3 148537801 148538310 -69498848 - L1MB3 LINE L1 -281 5902 5391 1537 175 0 4 chr3 148541225 148541505 -69495653 + AluJb SINE Alu 1 279 -33 255 204 0 0 chr3 148541506 148541560 -69495598 + G-rich Low_complexity Low_complexity 5 58 0 590 258 154 10 chr3 148542077 148542375 -69494783 - L1M4 LINE L1 -3558 2588 2248 281 316 44 0 chr3 148542521 148542635 -69494523 - L2 LINE L2 0 3272 3154 35 41 0 0 chr3 148544839 148544888 -69492270 + AT_rich Low_complexity Low_complexity 1 49 0 1925 150 126 67 chr3 148546688 148547108 -69490050 + MER65A LTR ERV1 1 445 0 2356 76 0 3 chr3 148547335 148547639 -69489519 + AluY SINE Alu 1 303 -8 200 277 0 0 chr3 148549212 148549259 -69487899 + CT-rich Low_complexity Low_complexity 4 50 0 310 373 25 6 chr3 148549877 148550035 -69487123 + MIR SINE MIR 66 226 -36 221 253 53 27 chr3 148550120 148550195 -69486963 - MIR SINE MIR -113 149 73 297 324 18 9 chr3 148550285 148550396 -69486762 + MIR SINE MIR 33 144 -64 224 308 69 94 chr3 148551054 148551113 -69486045 - MIR3 SINE MIR -39 169 110 1908 146 27 0 chr3 148551113 148551407 -69485751 + AluJo SINE Alu 1 302 -10 224 308 69 94 chr3 148551407 148551506 -69485652 - MIR3 SINE MIR -98 110 15 1376 134 0 36 chr3 148551843 148552067 -69485091 + AluJo SINE Alu 84 299 -13 218 239 152 11 chr3 148554402 148554494 -69482664 - L2 LINE L2 0 3272 3168 889 195 30 0 chr3 148555517 148555686 -69481472 - Tigger2 DNA MER2_type -11 2707 2534 257 170 0 0 chr3 148555673 148555726 -69481432 - Tigger2 DNA MER2_type -2520 198 146 * 27 0 0 0 chr3 148555730 148555757 -69481401 + AT_rich Low_complexity Low_complexity 1 27 0 1694 184 14 0 chr3 148555759 148556037 -69481121 - AluJb SINE Alu -30 282 1 1059 97 7 0 chr3 148556041 148556195 -69480963 - Tigger2 DNA MER2_type -2563 155 1 255 329 12 24 chr3 148556204 148556289 -69480869 - L2 LINE L2 -3 3310 3227 189 356 55 14 chr3 148557739 148557885 -69479273 - L3 LINE CR1 -820 757 606 1416 142 0 40 chr3 148558286 148558511 -69478647 - AluJb SINE Alu -5 307 92 2009 149 3 10 chr3 148558517 148558819 -69478339 - AluJb SINE Alu -12 300 1 2493 51 0 17 chr3 148560840 148561134 -69476024 + AluY SINE Alu 1 289 -22 846 255 72 20 chr3 148562767 148563164 -69473994 + L1ME1 LINE L1 845 1228 -5178 240 309 32 0 chr3 148563181 148563275 -69473883 + MLT1F1 LTR MaLR 35 131 -436 2528 184 35 6 chr3 148563297 148563812 -69473346 + L1MC3 LINE L1 7256 7785 0 256 241 0 0 chr3 148563805 148563863 -69473295 + L1ME1 LINE L1 1213 1270 -5139 * 1859 113 11 3 chr3 148563863 148564146 -69473012 + Tigger2 DNA MER2_type 2434 2718 0 323 182 0 0 chr3 148564212 148564267 -69472891 + Tigger5 DNA MER2_type 1 55 -2268 552 165 0 0 chr3 148564271 148564362 -69472796 + Tigger5 DNA MER2_type 2231 2321 -2 2397 249 74 33 chr3 148564362 148565084 -69472074 + L1ME1 LINE L1 4669 5360 -1066 1756 198 3 0 chr3 148565084 148565392 -69471766 + AluJb SINE Alu 1 309 -3 2397 249 74 33 chr3 148565392 148566358 -69470800 + L1ME1 LINE L1 5360 6426 0 1409 238 10 44 chr3 148568406 148568573 -69468585 + MLT1A2 LTR MaLR 1 172 -202 2273 108 10 0 chr3 148568573 148568870 -69468288 + AluSx SINE Alu 1 300 -12 1409 238 10 44 chr3 148568870 148569089 -69468069 + MLT1A2 LTR MaLR 172 374 0 381 288 50 7 chr3 148569145 148569284 -69467874 - L1ME3A LINE L1 -13 6157 6013 1756 173 26 10 chr3 148570656 148570963 -69466195 + AluJo SINE Alu 1 312 0 502 219 79 0 chr3 148571167 148571281 -69465877 + MER63 DNA MER1_type 12 760 -76 236 254 15 0 chr3 148571321 148571388 -69465770 + MER63 DNA MER1_type 995 1062 0 303 341 92 18 chr3 148571530 148571759 -69465399 + L3 LINE CR1 784 1029 -548 331 310 51 25 chr3 148572095 148572253 -69464905 + L3 LINE CR1 1213 1374 -203 916 130 8 0 chr3 148573987 148574118 -69463040 - AluJb SINE Alu -180 132 1 405 116 36 107 chr3 148574323 148574435 -69462723 + MER53 DNA DNA 84 187 -2 517 234 108 28 chr3 148574544 148574758 -69462400 + MER106A DNA MER1_type 3 233 -3 399 165 117 10 chr3 148577118 148577221 -69459937 - MIR SINE MIR -97 165 52 247 93 0 56 chr3 148580582 148580636 -69456522 + L1PA3 LINE L1 6105 6155 0 363 44 0 0 chr3 148581100 148581145 -69456013 + (CA)n Simple_repeat Simple_repeat 2 46 0 303 304 78 0 chr3 148583441 148583543 -69453615 - L1ME3A LINE L1 -2020 5788 5679 287 286 0 29 chr3 148585448 148585553 -69451605 - MIR SINE MIR -128 134 33 1240 190 8 0 chr3 148586316 148586574 -69450584 - L1MA7 LINE L1 -2 6289 6030 215 138 46 15 chr3 148586699 148586764 -69450394 + GA-rich Low_complexity Low_complexity 1 67 0 378 0 0 0 chr3 148587686 148587728 -69449430 + (TG)n Simple_repeat Simple_repeat 2 43 0 655 226 5 81 chr3 148589098 148589209 -69447949 + L1MD3 LINE L1 7731 7818 -177 2329 117 7 0 chr3 148589209 148589518 -69447640 + AluSx SINE Alu 1 311 -1 655 226 5 81 chr3 148589518 148589627 -69447531 + L1MD3 LINE L1 7818 7934 -61 628 225 0 14 chr3 148589769 148589911 -69447247 - MER2 DNA MER2_type -204 141 2 1910 131 58 0 chr3 148590069 148590360 -69446798 - AluSx SINE Alu -4 308 1 496 249 297 0 chr3 148690730 148690979 -69346179 + MER5C DNA MER1_type 1 323 -1 574 316 218 3 chr3 148691015 148691401 -69345757 - L2 LINE L2 -37 3276 2808 2052 117 0 46 chr3 148691739 148692064 -69345094 + AluSx SINE Alu 1 310 -2 237 277 48 24 chr3 148692170 148692253 -69344905 - L2 LINE L2 -1047 2267 2183 695 271 92 4 chr3 148692376 148692605 -69344553 - MIR SINE MIR -13 249 1 1632 168 29 42 chr3 148692747 148693056 -69344102 - AluJb SINE Alu -5 307 3 640 307 146 0 chr3 148693239 148693526 -69343632 - L2 LINE L2 -1271 2043 1715 1505 180 63 71 chr3 148693531 148693796 -69343362 + MLT2C2 LTR ERVL 1 267 -197 1618 210 4 0 chr3 148693796 148694102 -69343056 + AluJo SINE Alu 1 307 0 1505 180 63 71 chr3 148694102 148694228 -69342930 + MLT2C2 LTR ERVL 267 392 -72 217 211 0 0 chr3 148694239 148694277 -69342881 + (CGTG)n Simple_repeat Simple_repeat 3 40 0 255 79 0 0 chr3 148694278 148694316 -69342842 + (GA)n Simple_repeat Simple_repeat 1 38 0 225 125 0 25 chr3 148694327 148694367 -69342791 + MLT2C2 LTR ERVL 359 397 0 1179 300 152 31 chr3 148694371 148695134 -69342024 - L2 LINE L2 -1610 1704 850 571 143 0 0 chr3 148695438 148695529 -69341629 + L1P4 LINE L1 5560 5650 -511 880 115 11 115 chr3 148695529 148695683 -69341475 + THE1C LTR MaLR 1 135 -240 1897 120 46 3 chr3 148695683 148695966 -69341192 - AluSg SINE Alu -15 295 1 880 115 11 115 chr3 148695966 148695994 -69341164 + THE1C LTR MaLR 135 164 -211 1209 118 0 6 chr3 148696000 148696169 -69340989 - AluSg/x SINE Alu -10 302 135 2200 97 24 0 chr3 148696174 148696462 -69340696 - AluSx SINE Alu -17 295 1 1029 145 40 61 chr3 148696463 148696691 -69340467 + THE1C LTR MaLR 153 375 0 763 122 0 0 chr3 148696691 148696806 -69340352 + L1P4 LINE L1 5646 5760 -403 777 185 26 53 chr3 148696934 148697123 -69340035 + AluSg/x SINE Alu 129 312 0 434 294 29 3 chr3 148697330 148697515 -69339643 - MIR SINE MIR -24 238 5 321 231 17 5 chr3 148700753 148700874 -69336284 + MER5A DNA MER1_type 7 189 0 22 35 0 0 chr3 148701684 148701713 -69335445 + AT_rich Low_complexity Low_complexity 1 29 0 38545 66 3 5 chr3 148703152 148708965 -69328193 - L1PA5 LINE L1 -7 6147 344 6272 209 77 39 chr3 148708971 148709249 -69327909 + L1MA4A LINE L1 1639 1905 -4943 1425 195 79 4 chr3 148709249 148709516 -69327642 + AluSx SINE Alu 1 287 -25 230 49 0 49 chr3 148709520 148709561 -69327597 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6272 209 77 39 chr3 148709561 148711001 -69326157 + L1MA4A LINE L1 1907 3291 -3557 370 122 0 0 chr3 148711001 148711050 -69326108 - 5S rRNA rRNA -72 49 1 6272 209 77 39 chr3 148711050 148711368 -69325790 + L1MA4A LINE L1 3291 3596 -3252 7116 22 3 6 chr3 148711368 148711405 -69325753 + L1PA2 LINE L1 5300 5336 -819 2006 114 7 4 chr3 148711405 148711686 -69325472 + AluSq SINE Alu 1 282 -31 7116 22 3 6 chr3 148711686 148712506 -69324652 + L1PA2 LINE L1 5336 6155 0 6272 209 77 39 chr3 148712506 148713898 -69323260 + L1MA4A LINE L1 3596 5257 -1591 2175 185 32 10 chr3 148713969 148714374 -69322784 - MSTB LTR MaLR -12 414 1 5882 148 28 32 chr3 148714374 148715963 -69321195 + L1MA4A LINE L1 5254 6835 -170 2017 145 0 0 chr3 148715963 148716273 -69320885 + AluSx SINE Alu 1 310 0 5882 148 28 32 chr3 148716273 148716444 -69320714 + L1MA4A LINE L1 6835 7005 0 966 189 64 75 chr3 148717010 148717045 -69320113 + MIR SINE MIR 1 35 -227 1798 114 4 11 chr3 148717045 148717309 -69319849 + AluSx SINE Alu 45 306 -6 966 189 64 75 chr3 148717309 148717538 -69319620 + MIR SINE MIR 35 262 0 824 268 90 48 chr3 148717754 148718073 -69319085 + Charlie7 DNA MER1_type 29 333 -2279 2142 131 16 0 chr3 148718073 148718378 -69318780 - AluSx SINE Alu -2 310 1 824 268 90 48 chr3 148718378 148718689 -69318469 + Charlie7 DNA MER1_type 333 686 -1926 2008 147 0 10 chr3 148718996 148719302 -69317856 - AluSx SINE Alu -9 303 1 2247 94 3 0 chr3 148719436 148719722 -69317436 + AluY SINE Alu 1 287 -24 2026 186 28 39 chr3 148719745 148719885 -69317273 + L1MC4 LINE L1 5395 5535 -2250 2416 68 0 37 chr3 148719885 148720206 -69316952 - AluY SINE Alu -2 309 1 2026 186 28 39 chr3 148720206 148720532 -69316626 + L1MC4 LINE L1 5535 5856 -1929 804 184 80 25 chr3 148720533 148720696 -69316462 - AluJo SINE Alu -20 292 121 210 254 0 0 chr3 148720697 148720756 -69316402 + T-rich Low_complexity Low_complexity 1 59 0 761 156 7 7 chr3 148720767 148720902 -69316256 - AluJo SINE Alu -177 135 1 362 179 51 13 chr3 148720902 148720980 -69316178 + L1MC4 LINE L1 5843 5923 -1862 415 229 31 0 chr3 148720981 148721077 -69316081 + Tigger4(Zombi) DNA MER2_type 3 101 -2630 2166 101 3 3 chr3 148721080 148721376 -69315782 + AluSg SINE Alu 1 296 -14 755 178 0 22 chr3 148721378 148721513 -69315645 - AluJo SINE Alu -170 132 1 282 73 0 0 chr3 148721626 148721667 -69315491 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 486 139 19 37 chr3 148721819 148721927 -69315231 + AluSg/x SINE Alu 203 308 -1 666 85 85 0 chr3 148721928 148722034 -69315124 + AluSg/x SINE Alu 177 291 -19 2000 143 3 13 chr3 148722037 148722338 -69314820 + AluSq SINE Alu 1 298 -15 624 62 0 72 chr3 148722371 148722468 -69314690 - HY4 scRNA scRNA -3 90 1 1874 144 0 26 chr3 148722692 148723004 -69314154 - AluSq SINE Alu -9 304 1 2192 125 0 3 chr3 148723115 148723419 -69313739 - AluSq SINE Alu -10 303 1 228 139 0 0 chr3 148724408 148724444 -69312714 + L1MC4 LINE L1 6665 6700 -1342 234 0 0 0 chr3 148725057 148725083 -69312075 + (TTA)n Simple_repeat Simple_repeat 2 27 0 740 133 172 0 chr3 148725086 148725214 -69311944 - AluSg/x SINE Alu -36 274 125 2131 124 0 0 chr3 148725218 148725517 -69311641 - AluSx SINE Alu -13 299 1 211 352 59 55 chr3 148726027 148726280 -69310878 - L2 LINE L2 -2593 721 468 193 284 0 30 chr3 148726756 148726823 -69310335 + MIR SINE MIR 68 132 -130 2031 133 3 37 chr3 148726846 148727169 -69309989 - AluSx SINE Alu 0 312 1 2160 129 0 0 chr3 148727851 148728160 -69308998 - AluSx SINE Alu -3 309 1 21 0 0 0 chr3 148729038 148729059 -69308099 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr3 148729270 148729298 -69307860 + AT_rich Low_complexity Low_complexity 1 28 0 2115 144 0 0 chr3 148729874 148730186 -69306972 + AluSx SINE Alu 1 312 0 410 219 0 0 chr3 148730373 148730446 -69306712 + MER5B DNA MER1_type 2 74 -104 21 0 0 0 chr3 148730488 148730509 -69306649 + AT_rich Low_complexity Low_complexity 1 21 0 423 0 0 0 chr3 148730872 148730919 -69306239 + (CA)n Simple_repeat Simple_repeat 1 47 0 369 220 53 30 chr3 148730936 148731068 -69306090 + MER103 DNA DNA 3 137 -29 492 306 36 15 chr3 148731816 148732012 -69305146 + L1MC/D LINE L1 5528 5727 -2081 467 252 238 0 chr3 148732093 148732299 -69304859 - MIR SINE MIR -6 256 2 316 367 80 5 chr3 148732918 148733117 -69304041 + MIR SINE MIR 31 244 -18 235 333 0 0 chr3 148733121 148733202 -69303956 + MIR SINE MIR 166 246 -16 1740 174 20 7 chr3 148733707 148734000 -69303158 + AluSx SINE Alu 1 297 -15 2167 94 0 64 chr3 148734268 148734596 -69302562 - AluSg SINE Alu -3 307 1 1479 178 57 0 chr3 148736354 148736652 -69300506 - L1MC3 LINE L1 0 7785 7471 1566 141 29 66 chr3 148736656 148737004 -69300154 - L1MB1 LINE L1 -103 6065 5731 * 6451 200 73 31 chr3 148736987 148737340 -69299818 - L1MB1 LINE L1 -1037 5109 4772 2028 141 3 3 chr3 148737340 148737644 -69299514 - AluJb SINE Alu -8 304 1 6451 200 73 31 chr3 148737644 148737966 -69299192 - L1MB1 LINE L1 -1374 4772 4465 2174 134 129 8 chr3 148737966 148738346 -69298812 + MSTA LTR MaLR 1 426 -2 6451 200 73 31 chr3 148738346 148738537 -69298621 - L1MB1 LINE L1 -1681 4465 4283 2076 119 34 0 chr3 148738537 148738831 -69298327 - AluSq SINE Alu -9 304 1 6451 200 73 31 chr3 148738831 148739541 -69297617 - L1MB1 LINE L1 -1863 4283 3448 2427 78 0 0 chr3 148739541 148739836 -69297322 - AluY SINE Alu -16 295 1 6451 200 73 31 chr3 148739836 148740006 -69297152 - L1MB1 LINE L1 -2698 3448 3287 1050 217 56 4 chr3 148740006 148740255 -69296903 - L1MC3 LINE L1 -305 7480 7219 234 320 41 10 chr3 148740256 148740353 -69296805 - MLT1F1 LTR MaLR -416 151 52 480 72 0 0 chr3 148740410 148740479 -69296679 + (GA)n Simple_repeat Simple_repeat 1 69 0 1140 183 9 120 chr3 148740480 148740797 -69296361 - AluJb SINE Alu -30 282 1 1771 131 66 0 chr3 148740838 148741112 -69296046 - AluJb SINE Alu -20 292 1 202 125 0 25 chr3 148741117 148741157 -69296001 + (GA)n Simple_repeat Simple_repeat 1 39 0 407 266 85 22 chr3 148742044 148742315 -69294843 + L1ME LINE L1 563 850 -5269 2218 93 3 3 chr3 148742711 148743000 -69294158 + AluSc SINE Alu 1 289 -20 239 255 151 84 chr3 148743132 148743833 -69293325 + L1ME LINE L1 2118 2865 -3264 1473 181 40 20 chr3 148743833 148744136 -69293022 + AluJo SINE Alu 4 312 0 236 219 27 14 chr3 148744158 148744231 -69292927 + L1ME LINE L1 2852 2925 -3204 253 264 44 0 chr3 148744260 148744351 -69292807 + (CATATA)n Simple_repeat Simple_repeat 2 96 0 22 70 0 0 chr3 148744354 148744397 -69292761 + AT_rich Low_complexity Low_complexity 1 43 0 621 186 53 0 chr3 148744448 148744561 -69292597 + FLAM_A SINE Alu 1 119 -14 1877 144 4 4 chr3 148744621 148744899 -69292259 + AluSx SINE Alu 3 280 -32 339 25 0 0 chr3 148744899 148744939 -69292219 + (CAAT)n Simple_repeat Simple_repeat 4 43 0 473 268 140 27 chr3 148744955 148745291 -69291867 + L1ME LINE L1 3456 3829 -2300 281 20 98 20 chr3 148745304 148745355 -69291803 + L1MC2 LINE L1 6290 6344 0 717 194 42 0 chr3 148745571 148745715 -69291443 + MER20 DNA MER1_type 69 218 -1 270 233 19 68 chr3 148745723 148745781 -69291377 + L1ME LINE L1 4559 4612 -1517 1705 192 0 0 chr3 148745781 148746097 -69291061 - AluJb SINE Alu 0 316 1 270 233 19 68 chr3 148746097 148746140 -69291018 + L1ME LINE L1 4612 4656 -1473 1649 189 0 16 chr3 148746167 148746473 -69290685 + AluJb SINE Alu 3 303 -9 408 254 146 41 chr3 148746491 148746740 -69290418 + L1ME LINE L1 4780 5076 -1053 1950 138 13 16 chr3 148746740 148747051 -69290107 - AluSx SINE Alu 0 312 3 408 254 146 41 chr3 148747051 148747144 -69290014 + L1ME LINE L1 5076 5158 -971 229 154 19 39 chr3 148747163 148747215 -69289943 - L2 LINE L2 -55 3258 3208 2080 136 0 3 chr3 148747324 148747626 -69289532 + AluSx SINE Alu 1 301 -11 515 315 92 30 chr3 148747627 148748123 -69289035 + L1ME LINE L1 5263 5786 -367 567 204 0 95 chr3 148748126 148748263 -69288895 + MER20 DNA MER1_type 1 124 -95 483 18 0 0 chr3 148748335 148748391 -69288767 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 957 254 10 66 chr3 148748489 148748801 -69288357 - LTR16C LTR ERVL -4 476 194 1671 243 123 15 chr3 148748801 148749323 -69287835 + MER119 DNA MER1_type 1 578 -5 301 302 36 3 chr3 148750895 148751032 -69286126 - L1 LINE L1 -1983 4163 4015 1187 221 105 29 chr3 148751055 148751475 -69285683 - L1MC4 LINE L1 0 8042 7591 1900 104 0 0 chr3 148751476 148751727 -69285431 - AluSq SINE Alu -9 304 54 1832 218 18 21 chr3 148751735 148751805 -69285353 - L1MC4 LINE L1 -381 7661 7592 2266 120 0 0 chr3 148751805 148752106 -69285052 - AluSq SINE Alu -11 302 2 1832 218 18 21 chr3 148752106 148752471 -69284687 - L1MC4 LINE L1 -450 7592 7227 * 2299 222 70 73 chr3 148752460 148752756 -69284402 - L1MC4a LINE L1 -1473 6335 6040 183 42 0 0 chr3 148752756 148752780 -69284378 + (TC)n Simple_repeat Simple_repeat 2 25 0 2299 222 70 73 chr3 148752780 148752958 -69284200 - L1MC4a LINE L1 -1768 6040 5863 2267 95 0 14 chr3 148752958 148753253 -69283905 + AluSg SINE Alu 1 291 -19 2299 222 70 73 chr3 148753253 148753746 -69283412 - L1MC4a LINE L1 -1945 5863 5370 257 181 245 0 chr3 148753934 148754028 -69283130 + L1MC4a LINE L1 5315 5431 -2377 370 197 27 129 chr3 148754030 148754177 -69282981 + L1MB5 LINE L1 4972 5103 -1043 746 178 0 6 chr3 148754185 148754390 -69282768 + GA-rich Low_complexity Low_complexity 1 203 0 3832 203 29 5 chr3 148754393 148755340 -69281818 + L1MB5 LINE L1 5122 6084 -90 1528 210 16 30 chr3 148755344 148755696 -69281462 + MLT1A1 LTR MaLR 5 353 -12 391 204 20 10 chr3 148755696 148755794 -69281364 + L1MB5 LINE L1 6076 6174 0 1528 210 16 30 chr3 148755794 148755807 -69281351 + MLT1A1 LTR MaLR 353 365 0 696 312 119 18 chr3 148755832 148756175 -69280983 + L1MC4a LINE L1 5469 5846 -1962 571 329 72 9 chr3 148756847 148757069 -69280089 + MIR SINE MIR 14 249 -13 193 309 148 0 chr3 148757194 148757275 -69279883 + L2 LINE L2 3171 3263 -9 610 285 110 46 chr3 148758387 148758825 -69278333 + L1M4 LINE L1 3689 4154 -1992 27 29 0 0 chr3 148759250 148759284 -69277874 + AT_rich Low_complexity Low_complexity 1 34 0 1491 259 67 45 chr3 148759290 148759981 -69277177 - L1ME3 LINE L1 -9 6153 5450 290 151 0 2 chr3 148760404 148760458 -69276700 - L1ME LINE L1 -590 5574 5522 1753 170 10 3 chr3 148760514 148760808 -69276350 + AluJb SINE Alu 3 298 -14 1448 185 0 50 chr3 148760813 148761115 -69276043 + AluJo SINE Alu 1 287 -25 1798 120 6 102 chr3 148761126 148761460 -69275698 + AluSx SINE Alu 1 302 0 1693 158 13 39 chr3 148761537 148761848 -69275310 + AluJo SINE Alu 1 303 -9 21 0 0 0 chr3 148761990 148762011 -69275147 + AT_rich Low_complexity Low_complexity 1 21 0 1655 196 6 25 chr3 148762120 148762437 -69274721 + AluJo SINE Alu 1 311 -1 461 282 98 38 chr3 148762587 148762853 -69274305 + L1MCa LINE L1 1417 1698 -4728 242 195 23 58 chr3 148762884 148762916 -69274242 + L1MCa LINE L1 2465 2497 -3929 2090 85 4 0 chr3 148762916 148763188 -69273970 + AluY SINE Alu 1 273 -38 1947 110 7 14 chr3 148763188 148763480 -69273678 + AluY SINE Alu 2 291 -20 242 195 23 58 chr3 148763480 148763533 -69273625 + L1MCa LINE L1 2495 2548 -3878 222 37 0 0 chr3 148763569 148763596 -69273562 + (CA)n Simple_repeat Simple_repeat 2 28 0 252 184 0 0 chr3 148763677 148763726 -69273432 + (CATATA)n Simple_repeat Simple_repeat 2 50 0 1075 266 66 39 chr3 148763727 148764287 -69272871 + L1MCa LINE L1 2577 3151 -3275 249 268 0 0 chr3 148764305 148764376 -69272782 + L1MCa LINE L1 3235 3305 -3121 1653 182 0 0 chr3 148764452 148764716 -69272442 - AluJb SINE Alu -14 298 35 452 308 141 30 chr3 148764891 148765125 -69272033 - MLT1J1 LTR MaLR -135 311 52 303 336 29 29 chr3 148765254 148765394 -69271764 + L1ME LINE L1 5677 5816 -305 328 339 58 16 chr3 148766417 148766693 -69270465 + HERVL LTR ERVL 352 617 -5037 300 356 108 15 chr3 148766825 148767168 -69269990 + HERVL LTR ERVL 830 1204 -4560 2832 292 60 16 chr3 148767306 148768497 -69268661 + HERVL LTR ERVL 1375 2657 -3107 931 266 60 6 chr3 148768571 148768844 -69268314 - MLT1E LTR MaLR -63 530 277 337 245 63 44 chr3 148769080 148769188 -69267970 + HAL1 LINE L1 2346 2459 -48 2490 81 0 3 chr3 148769188 148769496 -69267662 - AluSc SINE Alu -2 307 1 337 245 63 44 chr3 148769496 148769546 -69267612 + HAL1 LINE L1 2459 2507 0 2858 10 0 0 chr3 148769748 148770059 -69267099 - AluYb8 SINE Alu -7 311 1 807 158 25 0 chr3 148770255 148770375 -69266783 - FLAM_C SINE Alu -18 125 3 226 246 0 0 chr3 148770826 148770883 -69266275 + L1ME LINE L1 5572 5628 -493 25 51 0 0 chr3 148771234 148771273 -69265885 + AT_rich Low_complexity Low_complexity 1 39 0 1737 108 14 25 chr3 148771499 148771776 -69265382 + AluSx SINE Alu 38 311 -1 683 104 78 0 chr3 148771777 148771892 -69265266 + AluSg/x SINE Alu 177 300 -10 2202 117 3 0 chr3 148771892 148772191 -69264967 + AluSx SINE Alu 1 300 -12 1232 148 0 0 chr3 148772202 148772384 -69264774 + AluSg/x SINE Alu 118 299 -11 2396 79 0 31 chr3 148772445 148772762 -69264396 + AluSg SINE Alu 1 307 -3 833 149 6 0 chr3 148773472 148773633 -69263525 + GA-rich Low_complexity Low_complexity 3 164 0 583 146 0 126 chr3 148773664 148773815 -69263343 + FLAM_A SINE Alu 1 132 -1 2147 137 50 19 chr3 148774425 148774789 -69262369 + THE1C LTR MaLR 1 375 0 21 71 0 0 chr3 148775770 148775812 -69261346 + AT_rich Low_complexity Low_complexity 1 42 0 366 205 0 0 chr3 148775855 148775933 -69261225 + MLT1J LTR MaLR 398 475 -36 223 289 211 18 chr3 148776896 148777010 -69260148 + L2 LINE L2 3177 3312 -1 1857 159 7 3 chr3 148777022 148777312 -69259846 - AluJb SINE Alu -21 291 1 1725 87 70 0 chr3 148777690 148777965 -69259193 + AluY SINE Alu 36 326 0 1385 146 95 14 chr3 148778282 148778577 -69258581 + Tigger1 DNA MER2_type 1848 2166 -252 1423 165 0 0 chr3 148778744 148778987 -69258171 + L1PA13 LINE L1 5916 6158 -5 723 170 0 30 chr3 148779144 148779328 -69257830 + FLAM_C SINE Alu 3 182 0 1116 154 12 0 chr3 148779329 148779491 -69257667 + AluJb SINE Alu 130 293 -19 230 292 34 0 chr3 148779574 148779663 -69257495 + HAL1 LINE L1 328 419 -2088 236 276 40 0 chr3 148780028 148780104 -69257054 + HAL1 LINE L1 804 882 -1625 1847 135 3 40 chr3 148780239 148780542 -69256616 + AluSx SINE Alu 1 292 -20 553 248 164 35 chr3 148780685 148781032 -69256126 + HAL1 LINE L1 1395 1786 -721 21 36 0 0 chr3 148781089 148781117 -69256041 + AT_rich Low_complexity Low_complexity 1 28 0 2957 72 5 0 chr3 148781424 148781829 -69255329 + L1P2 LINE L1 5329 5735 -419 559 217 101 22 chr3 148781942 148782080 -69255078 - AluJo SINE Alu -163 149 1 28 29 0 0 chr3 148782127 148782162 -69254996 + AT_rich Low_complexity Low_complexity 1 35 0 359 286 59 0 chr3 148782727 148782846 -69254312 + MIR SINE MIR 72 197 -65 1985 153 0 0 chr3 148782934 148783234 -69253924 - AluSx SINE Alu -12 300 1 3753 126 8 10 chr3 148783245 148783865 -69253293 - L1PA6 LINE L1 -2 6152 5534 1017 169 6 6 chr3 148784116 148784293 -69252865 + AluSg/x SINE Alu 118 294 -18 2382 91 0 0 chr3 148784544 148784842 -69252316 + AluSc SINE Alu 1 298 -11 2028 121 39 0 chr3 148785014 148785295 -69251863 + AluSx SINE Alu 1 292 -20 27 29 0 0 chr3 148785341 148785375 -69251783 + AT_rich Low_complexity Low_complexity 1 34 0 229 121 0 0 chr3 148785775 148785808 -69251350 + Tigger1 DNA MER2_type 2385 2417 -1 1813 174 0 10 chr3 148786052 148786346 -69250812 + AluSx SINE Alu 1 291 -21 239 178 76 102 chr3 148786358 148786476 -69250682 - L1ME LINE L1 -370 5792 5678 187 280 0 0 chr3 148786575 148786625 -69250533 + L2 LINE L2 3263 3312 -1 379 309 91 45 chr3 148786796 148787401 -69249757 - L1M4 LINE L1 -1712 4434 3802 309 248 142 18 chr3 148787433 148787546 -69249612 - L1M4 LINE L1 -2947 3199 3073 2582 49 0 3 chr3 148787684 148787988 -69249170 - AluY SINE Alu -8 303 1 1335 94 103 0 chr3 148788284 148788507 -69248651 + L1PA11 LINE L1 5583 5828 -346 1871 158 0 3 chr3 148788509 148788820 -69248338 + AluJb SINE Alu 1 310 0 238 299 37 19 chr3 148789408 148789515 -69247643 + MER94 DNA DNA 26 134 0 2068 121 3 10 chr3 148789795 148790093 -69247065 - AluSg SINE Alu -14 296 1 1693 132 107 14 chr3 148790099 148790416 -69246742 - AluSg SINE Alu 0 310 1 25 0 0 0 chr3 148790613 148790638 -69246520 + AT_rich Low_complexity Low_complexity 1 25 0 346 272 0 0 chr3 148791122 148791203 -69245955 + MLT1E2 LTR MaLR 100 180 -446 2333 84 0 3 chr3 148791211 148791507 -69245651 + AluY SINE Alu 1 295 -16 2495 87 0 0 chr3 148791507 148791818 -69245340 + AluY SINE Alu 1 311 0 1190 215 35 35 chr3 148791827 148792143 -69245015 + MLT1E2 LTR MaLR 302 617 -9 329 236 79 110 chr3 148792173 148792249 -69244909 - MIR SINE MIR -122 140 68 2360 93 0 7 chr3 148792249 148792551 -69244607 + AluSx SINE Alu 1 300 -12 329 236 79 110 chr3 148792551 148792601 -69244557 - MIR SINE MIR -194 68 18 647 238 0 0 chr3 148792979 148793105 -69244053 + FLAM_C SINE Alu 1 126 -17 219 114 0 0 chr3 148793105 148793140 -69244018 + (TAGA)n Simple_repeat Simple_repeat 2 36 0 1702 132 4 0 chr3 148793266 148793509 -69243649 - AluSx SINE Alu -68 244 1 1461 139 9 146 chr3 148793619 148793949 -69243209 + AluSx SINE Alu 1 285 -27 402 86 86 18 chr3 148793949 148794170 -69242988 + (TA)n Simple_repeat Simple_repeat 1 236 0 410 323 122 17 chr3 148794183 148794536 -69242622 - LTR16B LTR ERVL -23 441 52 254 225 0 28 chr3 148794941 148795012 -69242146 + L1ME4a LINE L1 5960 6028 -93 1846 167 0 16 chr3 148795063 148795368 -69241790 - AluJb SINE Alu -8 304 5 531 132 0 0 chr3 148795741 148795817 -69241341 + AluJ/FLAM SINE Alu 3 78 -234 1636 149 41 7 chr3 148796214 148796483 -69240675 - AluSx SINE Alu -32 280 3 2141 122 3 0 chr3 148796716 148797012 -69240146 + AluSx SINE Alu 1 297 -15 1432 196 76 3 chr3 148797328 148797619 -69239539 + AluJb SINE Alu 1 312 0 2043 156 0 0 chr3 148799534 148799829 -69237329 + AluSx SINE Alu 1 295 -17 747 62 0 0 chr3 148799829 148799926 -69237232 + (GGGA)n Simple_repeat Simple_repeat 4 100 0 1423 207 40 27 chr3 148799929 148800387 -69236771 + L1ME1 LINE L1 5709 6183 -1 484 185 8 34 chr3 148800391 148800510 -69236648 + L1MA10 LINE L1 6212 6327 -7 941 201 65 15 chr3 148801258 148801521 -69235637 - L1MB7 LINE L1 -20 6164 5889 5687 127 30 84 chr3 148801640 148802164 -69234994 - Tigger3b DNA MER2_type -1862 1166 615 1545 201 4 14 chr3 148802164 148802442 -69234716 - AluJo SINE Alu -16 296 22 5687 127 30 84 chr3 148802442 148803149 -69234009 - Tigger3b DNA MER2_type -2413 615 2 1581 206 61 6 chr3 148803192 148803536 -69233622 + MLT1A1 LTR MaLR 1 363 -2 319 73 62 21 chr3 148803593 148803689 -69233469 + (TA)n Simple_repeat Simple_repeat 2 101 0 21 0 0 0 chr3 148803834 148803855 -69233303 + AT_rich Low_complexity Low_complexity 1 21 0 811 141 0 22 chr3 148804445 148804608 -69232550 + FLAM_C SINE Alu 2 161 0 387 266 83 59 chr3 148804686 148805011 -69232147 + L1MC4a LINE L1 5326 5642 -2166 2018 109 0 54 chr3 148805011 148805160 -69231998 + AluSx SINE Alu 1 126 -186 2398 72 0 3 chr3 148805160 148805466 -69231692 + AluY SINE Alu 1 305 -6 1147 124 0 0 chr3 148805468 148805629 -69231529 + AluSg/x SINE Alu 136 296 -16 387 266 83 59 chr3 148805629 148805788 -69231370 + L1MC4a LINE L1 5642 5796 -2012 1465 105 53 0 chr3 148805788 148805997 -69231161 + AluSg/x SINE Alu 84 303 -7 387 266 83 59 chr3 148805997 148806168 -69230990 + L1MC4a LINE L1 5796 5990 -1818 33 43 0 0 chr3 148806317 148806364 -69230794 + AT_rich Low_complexity Low_complexity 1 47 0 215 191 15 0 chr3 148806487 148806555 -69230603 + (TA)n Simple_repeat Simple_repeat 1 69 0 1455 156 46 78 chr3 148806555 148806902 -69230256 + MER2 DNA MER2_type 1 336 -9 186 115 96 58 chr3 148807096 148807148 -69230010 - L3 LINE CR1 -175 1402 1349 1796 204 35 105 chr3 148807354 148807879 -69229279 + L1MB2 LINE L1 3739 4299 -1847 1871 136 30 0 chr3 148807879 148808144 -69229014 + AluSx SINE Alu 16 288 -24 1796 204 35 105 chr3 148808144 148808157 -69229001 + L1MB2 LINE L1 4299 4311 -1835 201 74 0 0 chr3 148808157 148808184 -69228974 + (TA)n Simple_repeat Simple_repeat 2 28 0 1796 204 35 105 chr3 148808184 148808413 -69228745 + L1MB2 LINE L1 4311 4453 -1693 2681 169 53 9 chr3 148808415 148808982 -69228176 + L1MB2 LINE L1 5571 6162 -9 2026 142 0 0 chr3 148808982 148809277 -69227881 - AluSx SINE Alu -17 295 1 3028 246 58 25 chr3 148809298 148810181 -69226977 + L1MC1 LINE L1 4016 4868 -1278 2029 112 0 79 chr3 148810181 148810511 -69226647 + AluSx SINE Alu 1 304 -8 3028 246 58 25 chr3 148810511 148810746 -69226412 + L1MC1 LINE L1 4868 5094 -1052 2167 102 0 3 chr3 148810746 148811029 -69226129 + AluSx SINE Alu 1 282 -30 315 0 0 0 chr3 148811032 148811067 -69226091 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3028 246 58 25 chr3 148811067 148811088 -69226070 + L1MC1 LINE L1 5095 5198 -948 1835 139 137 11 chr3 148811130 148811496 -69225662 + L1MC1 LINE L1 5581 5992 -341 1383 240 28 39 chr3 148811512 148811970 -69225188 - MER65C LTR ERV1 -8 453 1 541 312 69 31 chr3 148812323 148812931 -69224227 - MER57-int LTR ERV1 -388 6680 4225 2170 127 0 0 chr3 148813451 148813750 -69223408 - AluSx SINE Alu -13 299 1 1928 154 27 0 chr3 148814113 148814405 -69222753 - AluSx SINE Alu -12 300 1 1027 90 0 0 chr3 148815496 148815674 -69221484 - AluY SINE Alu 0 326 149 849 93 0 0 chr3 148815953 148816061 -69221097 - AluSg/x SINE Alu -17 293 186 2306 63 0 11 chr3 148816360 148816674 -69220484 + AluY SINE Alu 1 311 0 2008 141 3 0 chr3 148817411 148817702 -69219456 - AluSx SINE Alu -15 297 6 469 229 101 9 chr3 148817905 148818014 -69219144 - L2 LINE L2 -2 3311 3193 221 309 202 11 chr3 148818067 148818152 -69219006 + L2 LINE L2 1738 1805 -1509 219 36 0 0 chr3 148818152 148818180 -69218978 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 221 309 202 11 chr3 148818180 148818272 -69218886 + L2 LINE L2 1805 1949 -1365 406 261 0 54 chr3 148818507 148818637 -69218521 + LTR41 LTR ERVL 51 173 -600 2952 149 137 125 chr3 148818771 148818950 -69218208 - L1MC3 LINE L1 0 7785 7610 1993 146 3 0 chr3 148818950 148819245 -69217913 - AluSx SINE Alu -16 296 1 2952 149 137 125 chr3 148819245 148819508 -69217650 - L1MC3 LINE L1 -175 7610 7352 1996 124 10 10 chr3 148819508 148819807 -69217351 - AluY SINE Alu -12 299 1 2952 149 137 125 chr3 148819807 148819943 -69217215 - L1MC3 LINE L1 -433 7352 7219 277 286 0 0 chr3 148819943 148820027 -69217131 - MLT1F1 LTR MaLR -442 125 42 2952 149 137 125 chr3 148820027 148820153 -69217005 - L1MC3 LINE L1 -566 7219 7096 2264 118 0 0 chr3 148820153 148820457 -69216701 - AluSx SINE Alu -5 307 4 2952 149 137 125 chr3 148820457 148820730 -69216428 - L1MC3 LINE L1 -689 7096 6709 2233 113 0 7 chr3 148820732 148821032 -69216126 + AluSx SINE Alu 1 298 -14 1176 207 67 4 chr3 148821035 148821305 -69215853 + AluJb SINE Alu 18 304 -8 1351 180 66 4 chr3 148821308 148821580 -69215578 + AluJb SINE Alu 18 306 -6 235 218 58 19 chr3 148821580 148821682 -69215476 - L1MC4a LINE L1 -1131 6677 6625 824 135 45 8 chr3 148821951 148822084 -69215074 + AluJo SINE Alu 1 138 -174 456 207 0 0 chr3 148822088 148822209 -69214949 + (TA)n Simple_repeat Simple_repeat 1 121 0 2264 109 3 7 chr3 148822790 148823092 -69214066 - AluSg SINE Alu -9 301 1 782 208 59 59 chr3 148823517 148823725 -69213433 - L1MC3 LINE L1 -1655 6130 5923 1837 156 8 66 chr3 148823725 148823911 -69213247 - MER46B DNA MER2_type -2497 234 39 2254 102 3 0 chr3 148823911 148824206 -69212952 - AluSp SINE Alu -17 296 1 1837 156 8 66 chr3 148824206 148824249 -69212909 - MER46B DNA MER2_type -2692 39 -5 1560 180 10 32 chr3 148824249 148824560 -69212598 - AluJb SINE Alu -8 304 1 1837 156 8 66 chr3 148824560 148824608 -69212550 - MER46B DNA MER2_type -2736 4294967291 105 2480 61 0 0 chr3 148824608 148824904 -69212254 - AluY SINE Alu -15 296 1 1837 156 8 66 chr3 148824904 148825003 -69212155 - MER46B DNA MER2_type -2625 106 3 782 208 59 59 chr3 148825003 148825082 -69212076 - L1MC3 LINE L1 -1861 5924 5843 769 156 7 7 chr3 148825082 148825217 -69211941 + AluJo SINE Alu 1 135 -177 819 157 76 58 chr3 148825279 148825451 -69211707 + AluJo SINE Alu 118 292 -20 1369 212 37 0 chr3 148825452 148825778 -69211380 - L1MC3 LINE L1 -1929 5856 5519 2328 81 0 37 chr3 148825778 148826099 -69211059 + AluY SINE Alu 1 309 -2 1518 124 0 13 chr3 148826239 148826472 -69210686 + AluSg/x SINE Alu 80 309 -1 529 96 36 0 chr3 148827597 148827680 -69209478 + Alu SINE Alu 224 309 -2 2443 74 6 6 chr3 148827727 148828038 -69209120 + AluY SINE Alu 1 311 0 2456 61 0 3 chr3 148828216 148828512 -69208646 + AluY SINE Alu 2 296 -15 1107 210 65 0 chr3 148828855 148829084 -69208074 + AluJb SINE Alu 1 244 -68 350 297 93 28 chr3 148829199 148829381 -69207777 + L1ME LINE L1 5561 5754 -367 1816 147 111 26 chr3 148830297 148830712 -69206446 + LTR10A LTR ERV1 99 548 -61 631 196 57 65 chr3 148830871 148831101 -69206057 + L1MC4 LINE L1 7629 7856 -186 448 237 17 0 chr3 148831298 148831416 -69205742 + L1MC4 LINE L1 7923 8042 0 426 319 83 13 chr3 148831476 148831633 -69205525 - L2 LINE L2 -3 3310 3143 2286 118 3 0 chr3 148831700 148832005 -69205153 + AluSx SINE Alu 1 306 -6 1760 153 17 14 chr3 148832010 148832334 -69204824 + AluJo SINE Alu 1 325 0 435 291 107 0 chr3 148832664 148832872 -69204286 + MIR SINE MIR 21 258 -4 1435 92 0 39 chr3 148833162 148833369 -69203789 + AluSg/x SINE Alu 93 291 -19 21 0 0 0 chr3 148834164 148834185 -69202973 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr3 148834218 148834238 -69202920 + (A)n Simple_repeat Simple_repeat 1 20 0 1924 98 3 68 chr3 148834241 148834536 -69202622 + AluSx SINE Alu 1 276 -36 594 212 33 27 chr3 148834563 148834747 -69202411 + L1MC5 LINE L1 7702 7886 -75 25 31 0 0 chr3 148835789 148835821 -69201337 + AT_rich Low_complexity Low_complexity 1 32 0 1945 139 20 3 chr3 148835897 148836198 -69200960 + AluSx SINE Alu 1 306 -6 3070 203 40 35 chr3 148836198 148836332 -69200826 + MER63C DNA MER1_type 94 226 -834 2379 65 7 7 chr3 148836332 148836624 -69200534 - AluY SINE Alu -19 292 1 3070 203 40 35 chr3 148836624 148837322 -69199836 + MER63C DNA MER1_type 226 930 0 368 307 110 44 chr3 148837424 148837743 -69199415 + L2 LINE L2 2055 2394 -920 1010 165 0 0 chr3 148838132 148838296 -69198862 + AluSg/x SINE Alu 138 301 -11 631 233 92 34 chr3 148838338 148838370 -69198788 - MER58A DNA MER1_type -2199 221 192 2208 116 3 7 chr3 148838370 148838680 -69198478 + AluSg SINE Alu 1 309 -1 631 233 92 34 chr3 148838680 148838853 -69198305 - MER58A DNA MER1_type -2228 192 4 410 325 24 18 chr3 148838959 148839125 -69198033 - MIR SINE MIR -56 206 40 388 302 62 16 chr3 148839715 148839907 -69197251 - L1MC/D LINE L1 -2001 5807 5607 283 324 173 22 chr3 148840050 148840229 -69196929 + L2 LINE L2 2538 2689 -625 1551 160 108 15 chr3 148840229 148840572 -69196586 + THE1C LTR MaLR 1 375 0 283 324 173 22 chr3 148840572 148840670 -69196488 + L2 LINE L2 2689 2857 -457 188 246 0 58 chr3 148840680 148840749 -69196409 + L3b LINE CR1 1212 1276 -307 213 149 0 60 chr3 148841673 148841740 -69195418 + (TA)n Simple_repeat Simple_repeat 2 64 0 2189 123 3 0 chr3 148842138 148842440 -69194718 + AluSx SINE Alu 1 303 -9 724 221 108 10 chr3 148842660 148842855 -69194303 - MER58A DNA MER1_type -10 214 1 26 30 0 0 chr3 148843211 148843244 -69193914 + AT_rich Low_complexity Low_complexity 1 33 0 2864 171 71 27 chr3 148843287 148843959 -69193199 + L1MC1 LINE L1 5623 6324 -9 307 278 141 33 chr3 148844021 148844410 -69192748 + L1MCa LINE L1 1233 1663 -4763 256 244 100 31 chr3 148844479 148844639 -69192519 + L1M4 LINE L1 72 242 -6300 836 281 41 70 chr3 148844883 148845371 -69191787 + L1M4 LINE L1 581 1054 -5488 658 199 66 0 chr3 148845477 148845643 -69191515 + L1M4 LINE L1 1821 1997 -4649 2024 133 7 7 chr3 148845643 148845936 -69191222 + AluSq SINE Alu 1 293 -20 932 146 23 175 chr3 148845970 148846066 -69191092 + AluJo SINE Alu 46 155 -157 1952 130 0 83 chr3 148846066 148846405 -69190753 + AluSx SINE Alu 1 311 -1 932 146 23 175 chr3 148846405 148846616 -69190542 + AluJo SINE Alu 155 306 -6 3025 259 58 18 chr3 148846731 148848192 -69188966 + L1M4 LINE L1 3413 4982 -1662 2358 101 0 0 chr3 148848197 148848504 -69188654 + AluSq SINE Alu 1 307 -6 2927 163 9 18 chr3 148848785 148849351 -69187807 - MER6A DNA MER2_type -13 592 32 303 313 139 14 chr3 148849814 148849958 -69187200 + MIR SINE MIR 18 179 -83 255 182 0 36 chr3 148850036 148850091 -69187067 + L2 LINE L2 3194 3246 -67 706 122 16 24 chr3 148850104 148850227 -69186931 - AluJo/FRAM SINE Alu -14 298 177 * 790 147 29 22 chr3 148850219 148850355 -69186803 - AluJo SINE Alu -90 222 86 2298 100 0 26 chr3 148850357 148850666 -69186492 - AluSq SINE Alu -12 301 1 2019 133 3 13 chr3 148850852 148851153 -69186005 + AluSx SINE Alu 1 298 -14 228 67 0 0 chr3 148851402 148851432 -69185726 + (A)n Simple_repeat Simple_repeat 1 30 0 727 195 0 34 chr3 148851435 148851584 -69185574 + AluJb SINE Alu 157 300 -12 2536 63 0 0 chr3 148852600 148852900 -69184258 - AluSx SINE Alu -12 300 1 2216 95 3 7 chr3 148852902 148853206 -69183952 - AluSx SINE Alu -9 303 1 2356 221 83 47 chr3 148853307 148854146 -69183012 + L1MC4a LINE L1 6930 7799 -9 2249 109 26 0 chr3 148854492 148854796 -69182362 - AluSx SINE Alu 0 312 1 1551 176 56 77 chr3 148854922 148855389 -69181769 - MLT1C LTR MaLR 0 467 11 330 297 91 46 chr3 148855450 148855625 -69181533 - L2 LINE L2 -9 3304 3122 1994 164 0 0 chr3 148855740 148856039 -69181119 - AluJb SINE Alu -13 299 1 1683 160 6 46 chr3 148856935 148857260 -69179898 - AluJb SINE Alu 0 312 1 541 169 0 0 chr3 148858442 148858519 -69178639 - AluJ/FLAM SINE Alu -235 77 1 1544 119 20 78 chr3 148858766 148858874 -69178284 + L1MA5A LINE L1 6016 6129 -168 2133 80 0 22 chr3 148858874 148859149 -69178009 + AluSg SINE Alu 19 287 -23 1544 119 20 78 chr3 148859149 148859335 -69177823 + L1MA5A LINE L1 6129 6293 -4 792 151 48 54 chr3 148859365 148859519 -69177639 + MER119 DNA MER1_type 233 387 -196 2334 71 7 0 chr3 148859519 148859815 -69177343 + AluSp SINE Alu 1 298 -15 792 151 48 54 chr3 148859815 148859826 -69177332 + MER119 DNA MER1_type 387 397 -186 735 183 172 32 chr3 148860123 148860408 -69176750 + L1MC5 LINE L1 7607 7931 -30 360 350 88 38 chr3 148860839 148861387 -69175771 + L2 LINE L2 2397 2971 -343 2198 120 10 0 chr3 148861430 148861738 -69175420 + AluSx SINE Alu 1 311 -1 1074 207 33 5 chr3 148861739 148861952 -69175206 + MLT1A1 LTR MaLR 145 363 -2 488 299 14 20 chr3 148861956 148862103 -69175055 + ERVL LTR ERVL 2052 2197 -2799 2198 102 0 0 chr3 148862128 148862442 -69174716 + AluSx SINE Alu 1 314 0 1602 178 125 9 chr3 148862482 148862802 -69174356 + MSTD LTR MaLR 1 357 -39 307 184 58 103 chr3 148862802 148862889 -69174269 + AluJ/FLAM SINE Alu 1 83 -219 353 299 73 34 chr3 148863146 148863350 -69173808 + ERVL LTR ERVL 5172 5383 -381 1029 256 199 54 chr3 148863465 148863649 -69173509 + LTR16A LTR ERVL 1 157 -293 1994 148 7 0 chr3 148863649 148863947 -69173211 + AluSx SINE Alu 5 304 -8 1029 256 199 54 chr3 148863947 148864149 -69173009 + LTR16A LTR ERVL 157 443 -7 1655 163 7 39 chr3 148864329 148864636 -69172522 + AluJo SINE Alu 2 298 -14 2207 131 0 0 chr3 148864662 148864968 -69172190 - AluSx SINE Alu -6 306 1 1637 192 3 3 chr3 148864997 148865289 -69171869 - AluJb SINE Alu -20 292 1 1879 108 68 7 chr3 148865325 148865604 -69171554 - AluSc SINE Alu -13 296 1 1938 138 0 27 chr3 148865820 148866118 -69171040 - AluSx SINE Alu -22 290 1 2172 114 0 25 chr3 148866184 148866501 -69170657 - AluY SINE Alu -2 309 1 591 146 29 10 chr3 148866714 148866817 -69170341 + FRAM SINE Alu 59 163 -13 200 179 0 36 chr3 148866831 148866887 -69170271 + A-rich Low_complexity Low_complexity 2 55 0 1726 188 0 13 chr3 148867649 148867963 -69169195 + AluJo SINE Alu 2 311 -1 26 74 0 0 chr3 148868029 148868083 -69169075 + AT_rich Low_complexity Low_complexity 1 54 0 273 261 0 0 chr3 148868874 148868939 -69168219 - L1ME LINE L1 -673 5448 5384 300 360 26 0 chr3 148869016 148869169 -69167989 + L1M4 LINE L1 4034 4190 -1956 665 164 206 69 chr3 148869366 148869555 -69167603 - MER20 DNA MER1_type -1 218 4 2352 97 10 0 chr3 148869557 148869866 -69167292 + AluSp SINE Alu 1 312 -1 784 235 113 0 chr3 148870058 148870279 -69166879 - MIR SINE MIR 0 262 17 6347 197 35 27 chr3 148870321 148872046 -69165112 + L1MB3 LINE L1 3752 5501 -682 1973 139 10 3 chr3 148872046 148872340 -69164818 + AluSx SINE Alu 1 296 -16 6347 197 35 27 chr3 148872340 148873017 -69164141 + L1MB3 LINE L1 5501 6171 -12 261 0 0 0 chr3 148873182 148873211 -69163947 + (TG)n Simple_repeat Simple_repeat 2 30 0 280 283 40 45 chr3 148873393 148873616 -69163542 + L1ME LINE L1 5548 5769 -352 2168 122 33 0 chr3 148873751 148874054 -69163104 - AluSp SINE Alu 0 313 1 1607 207 0 3 chr3 148874103 148874407 -69162751 + AluJb SINE Alu 1 303 -9 863 182 6 65 chr3 148874606 148874776 -69162382 + FRAM SINE Alu 1 160 -6 668 246 0 0 chr3 148876462 148876584 -69160574 + FLAM_C SINE Alu 2 123 -20 24 0 0 0 chr3 148876584 148876608 -69160550 + AT_rich Low_complexity Low_complexity 1 24 0 1922 162 7 3 chr3 148877251 148877559 -69159599 + AluJb SINE Alu 1 309 -3 1825 154 35 70 chr3 148877881 148878251 -69158907 + MER46B DNA MER2_type 2 233 -3 813 258 81 0 chr3 148878347 148878545 -69158613 - MIR SINE MIR -38 224 11 2201 128 0 0 chr3 148878718 148879016 -69158142 - AluSx SINE Alu -14 298 1 1671 175 7 7 chr3 148879024 148879309 -69157849 - AluJb SINE Alu -27 285 1 1953 143 3 7 chr3 148879333 148879633 -69157525 + AluSx SINE Alu 1 299 -13 219 36 0 0 chr3 148879638 148879666 -69157492 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 729 247 44 64 chr3 148879793 148880044 -69157114 - MIR SINE MIR -2 260 15 447 226 116 65 chr3 148880707 148880906 -69156252 - MER112 DNA MER1_type -51 209 1 654 183 108 59 chr3 148881082 148881268 -69155890 - MER106B DNA MER1_type 0 1059 42 672 265 27 0 chr3 148881503 148881650 -69155508 + MLT1-int LTR MaLR 959 1109 -262 9173 43 9 2 chr3 148881760 148882886 -69154272 + L1P LINE L1 3267 4400 -1746 9557 96 7 8 chr3 148882986 148883738 -69153420 - L1P LINE L1 -1693 4453 3702 2246 118 0 10 chr3 148883738 148884052 -69153106 - AluY SINE Alu 0 311 1 9557 96 7 8 chr3 148884052 148884674 -69152484 - L1P LINE L1 -2444 3702 3081 1927 151 6 28 chr3 148885005 148885324 -69151834 + AluSx SINE Alu 1 312 0 2164 123 0 10 chr3 148885473 148885783 -69151375 - AluSx SINE Alu -5 307 1 2089 138 0 0 chr3 148886170 148886459 -69150699 - AluSq SINE Alu -24 289 1 193 276 146 32 chr3 148886534 148886657 -69150501 + MIR SINE MIR 57 193 -69 314 269 21 11 chr3 148886909 148887002 -69150156 - MIR SINE MIR -102 160 67 788 224 0 24 chr3 148887171 148887341 -69149817 - AluJb SINE Alu -10 302 137 2098 128 0 19 chr3 148887351 148887663 -69149495 - AluSx SINE Alu -3 309 4 1930 147 3 10 chr3 148887718 148888025 -69149133 - AluSx SINE Alu -7 305 1 194 302 135 8 chr3 148888654 148888780 -69148378 + L2 LINE L2 3164 3305 -8 740 108 108 0 chr3 148888787 148888907 -69148251 + L1MA8 LINE L1 5820 5952 -339 202 191 0 43 chr3 148889022 148889069 -69148089 + CT-rich Low_complexity Low_complexity 1 45 0 1673 176 0 26 chr3 148889069 148889371 -69147787 - AluSq SINE Alu -19 294 1 1122 166 0 6 chr3 148889382 148889563 -69147595 - AluSg/x SINE Alu -12 298 119 1130 140 12 0 chr3 148889566 148889730 -69147428 - AluSq SINE Alu -19 294 129 2269 89 3 3 chr3 148891033 148891324 -69145834 - AluSq SINE Alu -6 307 17 186 232 36 18 chr3 148891345 148891401 -69145757 + MIR3 SINE MIR 152 208 0 2270 125 0 0 chr3 148891490 148891802 -69145356 - AluSx SINE Alu 0 312 1 447 277 74 35 chr3 148892164 148892366 -69144792 + MIR SINE MIR 48 257 -5 814 174 103 22 chr3 148892602 148892693 -69144465 - AluJo SINE Alu -81 231 149 624 67 0 0 chr3 148892693 148892783 -69144375 + (GA)n Simple_repeat Simple_repeat 1 90 0 814 174 103 22 chr3 148892783 148892875 -69144283 - AluJo SINE Alu -163 149 33 315 275 211 7 chr3 148893117 148893259 -69143899 + MIR SINE MIR 81 251 -11 276 265 51 82 chr3 148893316 148893414 -69143744 - MER5B DNA MER1_type -75 114 17 1024 199 44 0 chr3 148893545 148893726 -69143432 - MER5A DNA MER1_type 0 189 1 263 300 7 64 chr3 148893741 148893881 -69143277 + L2 LINE L2 2926 3057 -215 469 330 28 56 chr3 148893998 148894177 -69142981 - MER91A DNA MER1_type -22 174 1 222 324 194 0 chr3 148894312 148894420 -69142738 + L2 LINE L2 3144 3272 0 506 278 85 45 chr3 148894708 148894884 -69142274 - MIR3 SINE MIR -23 185 3 198 0 0 0 chr3 148894920 148894942 -69142216 + (A)n Simple_repeat Simple_repeat 1 22 0 2142 120 0 0 chr3 148895298 148895590 -69141568 - AluSg SINE Alu -18 292 1 2120 123 7 3 chr3 148895767 148896068 -69141090 - AluJo SINE Alu -10 302 1 452 162 0 0 chr3 148896165 148896239 -69140919 - MIR SINE MIR -108 154 81 2260 78 0 7 chr3 148896508 148896832 -69140326 + AluY SINE Alu 1 322 0 471 118 0 15 chr3 148897354 148897422 -69139736 - AluSg/x SINE Alu -161 148 82 1267 171 9 5 chr3 148897422 148897639 -69139519 - AluSx SINE Alu -94 218 1 342 234 109 39 chr3 148897744 148897872 -69139286 - L2 LINE L2 -8 3305 3169 2269 100 0 0 chr3 148897889 148898179 -69138979 + AluSg SINE Alu 1 290 -20 409 157 16 91 chr3 148898191 148898312 -69138846 + L1MA8 LINE L1 5925 6036 -255 1982 130 0 0 chr3 148898312 148898597 -69138561 + AluSx SINE Alu 3 287 -25 867 149 0 27 chr3 148898601 148898749 -69138409 + AluSg/x SINE Alu 130 273 -37 1289 120 100 24 chr3 148898771 148899021 -69138137 + L1MA8 LINE L1 6019 6287 -4 346 265 60 0 chr3 148899237 148899320 -69137838 + MIR SINE MIR 18 105 -157 1434 150 65 17 chr3 148899342 148899635 -69137523 + AluJb SINE Alu 6 312 0 2177 102 3 17 chr3 148899639 148899934 -69137224 + AluSq SINE Alu 1 291 -22 192 200 0 0 chr3 148899942 148899982 -69137176 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 965 122 61 0 chr3 148900211 148900359 -69136799 + AluSq SINE Alu 142 298 -15 293 141 14 113 chr3 148900471 148900542 -69136616 + MIR SINE MIR 117 180 -82 1922 163 7 3 chr3 148900574 148900881 -69136277 - AluJb SINE Alu -4 308 1 1310 254 118 14 chr3 148901093 148901510 -69135648 + LTR40b LTR ERVL 3 462 0 584 192 0 80 chr3 148901658 148901709 -69135449 + AluJb SINE Alu 92 146 -166 2268 84 14 0 chr3 148901709 148901996 -69135162 + AluY SINE Alu 5 295 -16 584 192 0 80 chr3 148901996 148902069 -69135089 + AluJb SINE Alu 145 206 -106 2262 114 3 0 chr3 148902584 148902891 -69134267 + AluSx SINE Alu 1 308 -4 2125 139 0 0 chr3 148902904 148903198 -69133960 + AluSx SINE Alu 1 294 -18 875 228 12 0 chr3 148904179 148904346 -69132812 - AluJb SINE Alu -70 242 74 2649 234 116 38 chr3 148904461 148904746 -69132412 + L1M4 LINE L1 2574 2835 -3311 2181 127 3 7 chr3 148904746 148905053 -69132105 + AluSx SINE Alu 1 306 -6 2649 234 116 38 chr3 148905053 148905399 -69131759 + L1M4 LINE L1 2835 3153 -2993 2114 132 0 3 chr3 148905399 148905695 -69131463 + AluSq SINE Alu 1 295 -18 2649 234 116 38 chr3 148905695 148906252 -69130906 + L1M4 LINE L1 3153 3856 -2290 690 299 34 49 chr3 148906236 148906361 -69130797 - L1ME LINE L1 -388 5782 5657 * 2142 110 7 0 chr3 148906361 148906653 -69130505 + AluSp SINE Alu 1 294 -19 690 299 34 49 chr3 148906653 148906915 -69130243 - L1ME LINE L1 -513 5657 5401 2272 116 0 0 chr3 148906988 148907290 -69129868 - AluSx SINE Alu -10 302 1 538 219 43 43 chr3 148907305 148907469 -69129689 - MER112 DNA MER1_type -96 164 1 281 114 19 2 chr3 148907568 148907628 -69129530 + L1MA3 LINE L1 6244 6305 0 1961 158 30 21 chr3 148907705 148908040 -69129118 - MER1B DNA MER1_type -1 338 1 1327 126 65 9 chr3 148908052 148908266 -69128892 + MER30 DNA MER1_type 5 230 0 1297 241 70 64 chr3 148908629 148909085 -69128073 - HERV16 LTR ERVL -2953 2043 1585 2185 126 0 0 chr3 148909157 148909459 -69127699 - AluY SINE Alu -9 302 1 1959 137 11 0 chr3 148909467 148909751 -69127407 - AluSx SINE Alu -25 287 1 2321 96 3 29 chr3 148909753 148910067 -69127091 - AluSx SINE Alu -6 306 1 1808 156 21 3 chr3 148910081 148910364 -69126794 - AluJb SINE Alu -22 290 3 465 217 0 11 chr3 148910747 148910839 -69126319 - MLT1A2 LTR MaLR 0 374 284 192 77 0 0 chr3 148911305 148911331 -69125827 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 209 260 91 26 chr3 148911334 148911411 -69125747 + L2 LINE L2 2380 2461 -853 366 280 77 44 chr3 148911453 148911635 -69125523 + L2 LINE L2 2595 2782 -532 2029 274 82 16 chr3 148911653 148912214 -69124944 - MER115 DNA AcHobo 0 693 96 195 316 37 9 chr3 148912290 148912422 -69124736 + L2 LINE L2 2849 2983 -330 461 257 72 13 chr3 148912602 148912754 -69124404 + L2 LINE L2 3152 3312 -1 1752 167 30 0 chr3 148913066 148913336 -69123822 - AluJo SINE Alu -28 284 7 2096 85 18 18 chr3 148913355 148913656 -69123502 - AluSg SINE Alu 0 301 1 2069 130 0 10 chr3 148913864 148914183 -69122975 - AluSx SINE Alu 0 312 1 740 223 171 60 chr3 148914195 148914446 -69122712 - AluSg1 SINE Alu -30 279 1 558 222 53 6 chr3 148914448 148914619 -69122539 - L1ME4a LINE L1 0 6121 5943 362 132 0 0 chr3 148914620 148914673 -69122485 - Alu SINE Alu -9 291 239 1514 203 27 20 chr3 148915230 148915526 -69121632 + AluJo SINE Alu 1 298 -14 1483 105 24 14 chr3 148916138 148916347 -69120811 + AluSg/x SINE Alu 84 294 -16 1618 244 21 36 chr3 148916833 148917301 -69119857 - MER65C LTR ERV1 0 461 1 1482 160 65 27 chr3 148917301 148917587 -69119571 + L1MC1 LINE L1 6011 6310 -23 1093 253 58 6 chr3 148917589 148917917 -69119241 + L1ME1 LINE L1 5808 6152 -14 354 180 101 0 chr3 148918205 148918294 -69118864 + MER5A DNA MER1_type 6 103 -86 453 248 60 8 chr3 148918331 148918448 -69118710 + MER5B DNA MER1_type 47 169 -9 2513 113 80 8 chr3 148918933 148919555 -69117603 + L1P5 LINE L1 5002 5667 -484 276 204 0 0 chr3 148919545 148919594 -69117564 + L1MC4 LINE L1 5879 5927 -2115 * 3444 99 8 23 chr3 148919601 148920124 -69117034 + L1PB2 LINE L1 5636 6150 -1 1101 189 30 5 chr3 148920283 148920484 -69116674 - AluJb SINE Alu -7 305 100 868 98 0 8 chr3 148920508 148920631 -69116527 + L1PB2 LINE L1 5830 5951 -200 1922 134 24 7 chr3 148920856 148921147 -69116011 + AluJb SINE Alu 12 307 -5 380 193 74 140 chr3 148921147 148921390 -69115768 + L1MB5 LINE L1 2383 2609 -3537 1342 81 0 12 chr3 148921394 148921566 -69115592 + AluSg SINE Alu 1 170 -140 499 182 45 0 chr3 148921567 148921677 -69115481 + L1MB5 LINE L1 3786 3900 -2246 423 0 0 0 chr3 148921679 148921726 -69115432 + (CA)n Simple_repeat Simple_repeat 2 48 0 2218 126 8 72 chr3 148921741 148922130 -69115028 + THE1B LTR MaLR 1 364 0 550 187 0 0 chr3 148922161 148922252 -69114906 + AluJ/FLAM SINE Alu 2 92 -220 708 194 0 0 chr3 148922265 148922394 -69114764 + FRAM SINE Alu 42 170 -6 5176 198 69 16 chr3 148922394 148923814 -69113344 + L1MB5 LINE L1 3958 5535 -639 2580 143 38 22 chr3 148923814 148924263 -69112895 - MSTB2 LTR MaLR -1 456 1 5176 198 69 16 chr3 148924263 148924939 -69112219 + L1MB5 LINE L1 5535 6174 0 735 205 5 100 chr3 148925148 148925308 -69111850 - AluJb SINE Alu -55 257 116 2194 124 0 0 chr3 148925308 148925606 -69111552 + AluSx SINE Alu 1 298 -14 735 205 5 100 chr3 148925606 148925635 -69111523 - AluJb SINE Alu -196 116 86 1608 179 7 7 chr3 148925767 148926046 -69111112 + AluJo SINE Alu 15 293 -19 2142 136 0 0 chr3 148926053 148926355 -69110803 + AluSx SINE Alu 1 302 -10 22 0 0 0 chr3 148927357 148927379 -69109779 + AT_rich Low_complexity Low_complexity 1 22 0 272 193 36 12 chr3 148927379 148927462 -69109696 + L1ME3A LINE L1 4383 4467 -1679 251 163 125 0 chr3 148927582 148927662 -69109496 + L1ME3A LINE L1 4623 4712 -1434 1218 183 0 5 chr3 148927663 148927876 -69109282 + AluJo SINE Alu 86 297 -15 1283 264 110 41 chr3 148927914 148928316 -69108842 + L1ME3A LINE L1 4748 5121 -1049 2163 123 3 3 chr3 148928316 148928616 -69108542 - AluSc SINE Alu -9 300 1 1283 264 110 41 chr3 148928616 148929109 -69108049 + L1ME3A LINE L1 5121 5723 -447 2248 99 0 3 chr3 148929109 148929402 -69107756 + AluSq SINE Alu 1 292 -21 1283 264 110 41 chr3 148929402 148929593 -69107565 + L1ME3A LINE L1 5723 5899 -271 2201 125 0 0 chr3 148929601 148929898 -69107260 + AluSx SINE Alu 1 297 -15 1069 188 114 41 chr3 148929912 148930041 -69107117 + AluJo SINE Alu 7 125 -187 2063 146 0 3 chr3 148930041 148930350 -69106808 + AluSx SINE Alu 1 308 -4 1069 188 114 41 chr3 148930350 148930465 -69106693 + AluJo SINE Alu 125 269 -43 662 220 23 0 chr3 148930615 148930747 -69106411 + AluJo SINE Alu 2 136 -176 2474 53 0 0 chr3 148930747 148931030 -69106128 + AluY SINE Alu 1 283 -28 293 164 71 64 chr3 148931559 148931699 -69105459 + L1MC5 LINE L1 7786 7926 -35 21 36 0 0 chr3 148931699 148931727 -69105431 + AT_rich Low_complexity Low_complexity 1 28 0 2063 132 0 7 chr3 148931972 148932268 -69104890 + AluSx SINE Alu 1 294 -18 2130 219 99 5 chr3 148932284 148932847 -69104311 + L1MB7 LINE L1 5549 6164 -20 756 129 0 0 chr3 148932912 148933036 -69104122 + (TGGG)n Simple_repeat Simple_repeat 2 125 0 2279 110 3 0 chr3 148933226 148933525 -69103633 + AluSp SINE Alu 3 302 -11 2277 125 3 0 chr3 148933837 148934148 -69103010 + AluSx SINE Alu 1 312 0 182 270 27 63 chr3 148934295 148934406 -69102752 - MIR SINE MIR -143 119 13 432 157 43 0 chr3 148934755 148934825 -69102333 - U6 snRNA snRNA -34 73 1 2110 62 28 109 chr3 148934937 148935258 -69101900 + AluY SINE Alu 1 295 -16 1749 159 34 10 chr3 148935269 148935564 -69101594 + AluJb SINE Alu 1 302 -10 21 0 0 0 chr3 148935740 148935761 -69101397 + AT_rich Low_complexity Low_complexity 1 21 0 309 19 0 57 chr3 148935939 148935992 -69101166 + (TCTCCC)n Simple_repeat Simple_repeat 6 55 0 6003 65 24 56 chr3 148935996 148936887 -69100271 + SVA Other Other 5 866 -520 6705 65 6 54 chr3 148936950 148937950 -69099208 + SVA Other Other 433 1384 -2 255 355 57 0 chr3 148937978 148938119 -69099039 - L2 LINE L2 -2106 1208 1060 1406 200 102 12 chr3 148938740 148939075 -69098083 + HsTC2 DNA Tc2 232 596 -1302 233 300 167 26 chr3 148939189 148939459 -69097699 + L2 LINE L2 2384 2691 -623 665 159 91 23 chr3 148939459 148939591 -69097567 - MER20 DNA MER1_type 0 219 79 733 129 40 32 chr3 148939626 148939750 -69097408 - MER20 DNA MER1_type -93 126 2 1953 156 7 0 chr3 148939766 148940055 -69097103 - AluSx SINE Alu -21 291 1 446 279 111 34 chr3 148940074 148940489 -69096669 + L2 LINE L2 2723 3185 -128 21 36 0 0 chr3 148941098 148941126 -69096032 + AT_rich Low_complexity Low_complexity 1 28 0 2253 110 3 3 chr3 148941207 148941515 -69095643 + AluSq SINE Alu 1 308 -5 761 278 53 5 chr3 148941728 148941960 -69095198 + MIR SINE MIR 19 262 0 338 269 13 0 chr3 148942019 148942097 -69095061 - MER3 DNA MER1_type -129 80 2 1572 158 3 81 chr3 148942315 148942638 -69094520 - AluJb SINE Alu -14 298 1 534 205 133 0 chr3 148942732 148942898 -69094260 - Charlie4a DNA MER1_type -115 393 206 1010 195 35 93 chr3 148943027 148943250 -69093908 + L1ME1 LINE L1 5839 6037 -129 1870 158 0 26 chr3 148943250 148943561 -69093597 - AluJo SINE Alu -9 303 1 1010 195 35 93 chr3 148943561 148943681 -69093477 + L1ME1 LINE L1 6037 6162 -4 1966 148 14 3 chr3 148944220 148944511 -69092647 + AluSx SINE Alu 1 294 -18 385 42 0 21 chr3 148944753 148944801 -69092357 - THE1A LTR MaLR 0 355 309 30 59 0 0 chr3 148945061 148945112 -69092046 + GC_rich Low_complexity Low_complexity 1 51 0 204 222 16 16 chr3 148945168 148945231 -69091927 + (CCG)n Simple_repeat Simple_repeat 2 64 0 2179 96 10 3 chr3 148947092 148947383 -69089775 + AluSx SINE Alu 1 293 -19 595 203 209 6 chr3 148947793 148947951 -69089207 + MIR SINE MIR 7 196 -66 25 31 0 0 chr3 148947952 148947984 -69089174 + AT_rich Low_complexity Low_complexity 1 32 0 26 50 0 0 chr3 148948139 148948179 -69088979 + AT_rich Low_complexity Low_complexity 1 40 0 710 169 15 0 chr3 148948381 148948511 -69088647 - FRAM SINE Alu -2 174 43 1933 103 33 0 chr3 148948901 148949173 -69087985 - AluSp SINE Alu -32 281 1 1816 190 215 53 chr3 148949271 148949480 -69087678 + LTR48 LTR ERV1 1 175 -478 2191 135 0 0 chr3 148949480 148949792 -69087366 + AluSx SINE Alu 1 312 0 1816 190 215 53 chr3 148949792 148950188 -69086970 + LTR48 LTR ERV1 175 596 -57 1601 155 35 45 chr3 148950188 148950478 -69086680 - AluJo SINE Alu -25 287 1 1816 190 215 53 chr3 148950478 148950548 -69086610 + LTR48 LTR ERV1 596 653 0 2293 93 3 23 chr3 148951107 148951417 -69085741 + AluSx SINE Alu 1 304 -8 508 128 0 23 chr3 148951774 148951860 -69085298 - AluS SINE Alu 0 309 226 1905 120 52 62 chr3 148951986 148952185 -69084973 - THE1B LTR MaLR 0 364 169 2539 67 0 13 chr3 148952185 148952497 -69084661 - AluY SINE Alu -3 308 1 1905 120 52 62 chr3 148952497 148952665 -69084493 - THE1B LTR MaLR -195 169 1 10243 82 47 61 chr3 148952665 148954267 -69082891 - THE1B-int LTR MaLR 0 1580 1 2327 118 36 20 chr3 148954267 148954624 -69082534 - THE1B LTR MaLR 0 364 2 232 301 84 12 chr3 148954669 148954752 -69082406 + HAL1 LINE L1 1812 1900 -607 1504 107 0 0 chr3 148954882 148955078 -69082080 - AluSq SINE Alu -10 303 108 1646 173 24 17 chr3 148955101 148955396 -69081762 - AluJb SINE Alu -15 297 1 2067 135 10 0 chr3 148955751 148956047 -69081111 + AluSx SINE Alu 7 305 -7 236 256 223 0 chr3 148956119 148956240 -69080918 + HAL1 LINE L1 2251 2398 -109 2194 123 0 3 chr3 148956446 148956746 -69080412 + AluSx SINE Alu 1 299 -13 1916 146 10 14 chr3 148957020 148957314 -69079844 + AluSx SINE Alu 1 293 -19 558 222 53 6 chr3 148957315 148957486 -69079672 + L1ME4a LINE L1 5943 6121 0 740 223 171 60 chr3 148957488 148957739 -69079419 + AluSg1 SINE Alu 1 279 -30 2068 130 0 10 chr3 148957751 148958037 -69079121 + AluSx SINE Alu 1 285 -27 190 0 0 0 chr3 148958037 148958058 -69079100 + (TAA)n Simple_repeat Simple_repeat 2 180 0 2068 130 0 10 chr3 148958058 148958070 -69079088 + AluSx SINE Alu 285 296 -16 2110 82 18 18 chr3 148958278 148958559 -69078599 + AluSg SINE Alu 1 301 0 181 0 0 0 chr3 148958559 148958579 -69078579 + (TAA)n Simple_repeat Simple_repeat 2 180 0 1752 167 30 0 chr3 148958598 148958868 -69078290 + AluJo SINE Alu 7 284 -28 461 257 72 13 chr3 148959180 148959332 -69077826 - L2 LINE L2 -1 3312 3152 195 316 37 9 chr3 148959512 148959644 -69077514 - L2 LINE L2 -330 2983 2849 2029 274 82 16 chr3 148959720 148960281 -69076877 + MER115 DNA AcHobo 96 693 0 366 280 77 44 chr3 148960299 148960481 -69076677 - L2 LINE L2 -532 2782 2595 209 260 91 26 chr3 148960523 148960600 -69076558 - L2 LINE L2 -853 2461 2380 192 77 0 0 chr3 148960603 148960629 -69076529 + (TTTTC)n Simple_repeat Simple_repeat 4 29 0 2268 93 3 16 chr3 148961681 148961991 -69075167 + AluSg SINE Alu 1 306 -4 2001 139 24 7 chr3 148962001 148962296 -69074862 + AluSq SINE Alu 1 300 -13 2245 96 3 13 chr3 148962734 148963035 -69074123 - AluSx SINE Alu -14 298 1 477 272 32 57 chr3 148963041 148963199 -69073959 - LTR16A LTR ERVL -296 154 1 1843 171 0 0 chr3 148963531 148963830 -69073328 + AluJo SINE Alu 1 299 -13 2043 140 0 22 chr3 148963898 148964213 -69072945 + AluSx SINE Alu 1 308 -4 2620 43 0 0 chr3 148964914 148965213 -69071945 - AluY SINE Alu -12 299 1 292 372 18 0 chr3 148965356 148965469 -69071689 - MLT1K LTR MaLR -235 353 239 850 229 76 69 chr3 148965709 148965984 -69071174 + LTR16A1 LTR ERVL 181 457 0 1868 136 10 27 chr3 148966372 148966673 -69070485 - AluSx SINE Alu 0 312 17 1934 143 0 37 chr3 148966686 148967008 -69070150 - AluSx SINE Alu -2 310 1 366 23 0 0 chr3 148967171 148967214 -69069944 + (TG)n Simple_repeat Simple_repeat 1 43 0 1034 173 53 81 chr3 148968414 148968547 -69068611 + ORSL DNA AcHobo 1 136 -139 511 84 60 0 chr3 148968547 148968630 -69068528 - L1MB3 LINE L1 0 6183 6096 1034 173 53 81 chr3 148968630 148968779 -69068379 + ORSL DNA AcHobo 136 275 0 923 152 0 0 chr3 148969276 148969408 -69067750 - FLAM_C SINE Alu -11 132 1 2193 111 3 0 chr3 148969420 148969709 -69067449 - AluSq SINE Alu -14 299 10 281 256 81 0 chr3 148969757 148969843 -69067315 + MIR3 SINE MIR 82 174 -34 907 281 58 21 chr3 148969947 148970029 -69067129 + MER102b DNA MER1_type 2 80 -1348 1997 81 4 40 chr3 148970029 148970302 -69066856 + AluY SINE Alu 17 279 -32 339 25 0 0 chr3 148970302 148970342 -69066816 + (CAAAA)n Simple_repeat Simple_repeat 5 44 0 907 281 58 21 chr3 148970342 148970586 -69066572 + MER102b DNA MER1_type 79 341 0 570 90 169 0 chr3 148971098 148971187 -69065971 + AluYb8 SINE Alu 2 105 -213 357 207 0 0 chr3 148971187 148971269 -69065889 + A-rich Low_complexity Low_complexity 1 82 0 313 316 59 38 chr3 148971619 148971994 -69065164 + L2 LINE L2 2672 3059 -213 2142 85 3 88 chr3 148972301 148972629 -69064529 + AluSx SINE Alu 1 300 -12 1724 82 77 4 chr3 148972753 148972986 -69064172 - AluY SINE Alu -25 286 37 22 0 0 0 chr3 148973963 148973985 -69063173 + AT_rich Low_complexity Low_complexity 1 22 0 979 122 0 0 chr3 148974117 148974248 -69062910 - AluSq/x SINE Alu -180 133 3 1020 179 0 52 chr3 148974250 148974462 -69062696 - L1MB1 LINE L1 -33 6135 5935 10153 177 15 51 chr3 148974485 148974830 -69062328 - L1MA2 LINE L1 0 6304 5948 2265 99 0 23 chr3 148974830 148975132 -69062026 - AluSq SINE Alu -17 296 2 10153 177 15 51 chr3 148975132 148976097 -69061061 - L1MA2 LINE L1 -356 5948 4950 2140 79 0 62 chr3 148976097 148976402 -69060756 - AluSg SINE Alu -4 306 21 10153 177 15 51 chr3 148976402 148977279 -69059879 - L1MA2 LINE L1 -1354 4950 4043 2268 77 0 16 chr3 148977279 148977590 -69059568 - L1PA6 LINE L1 -13 6141 5836 10153 177 15 51 chr3 148977590 148977759 -69059399 - L1MA2 LINE L1 -2261 4043 3869 1980 143 3 7 chr3 148977759 148978059 -69059099 - AluSx SINE Alu -13 299 1 10153 177 15 51 chr3 148978059 148978537 -69058621 - L1MA2 LINE L1 -2435 3869 3599 2223 90 0 10 chr3 148978537 148978847 -69058311 - AluY SINE Alu 0 311 8 10153 177 15 51 chr3 148978847 148979148 -69058010 - L1MA2 LINE L1 -2705 3599 3289 402 209 57 19 chr3 148979150 148979255 -69057903 - AluSg/x SINE Alu -2 307 199 924 198 59 59 chr3 148979372 148979660 -69057498 - L1ME2 LINE L1 -137 6029 5742 1734 148 17 34 chr3 148979762 148980059 -69057099 - AluJb SINE Alu -14 298 7 428 286 93 7 chr3 148980090 148980230 -69056928 + LTR16A LTR ERVL 56 207 -243 1528 184 37 0 chr3 148980232 148980504 -69056654 + AluJo SINE Alu 1 282 -30 180 0 0 0 chr3 148980518 148980538 -69056620 + (CA)n Simple_repeat Simple_repeat 1 20 0 584 249 13 15 chr3 148980571 148980800 -69056358 + LTR16A LTR ERVL 191 450 0 672 279 160 8 chr3 148980800 148981044 -69056114 + HERV16 LTR ERVL 1 281 -4715 647 219 72 8 chr3 148981044 148981225 -69055933 + MLT1A2 LTR MaLR 1 187 -187 860 252 0 11 chr3 148981326 148981534 -69055624 + MLT1A2 LTR MaLR 184 374 0 425 298 9 0 chr3 148981722 148981836 -69055322 + HERV16 LTR ERVL 457 571 -4425 1808 156 21 3 chr3 148981917 148982200 -69054958 + AluJb SINE Alu 3 290 -22 2312 96 3 29 chr3 148982214 148982527 -69054631 + AluSx SINE Alu 1 305 -7 1959 137 11 0 chr3 148982529 148982813 -69054345 + AluSx SINE Alu 1 287 -25 2185 126 0 0 chr3 148982821 148983123 -69054035 + AluY SINE Alu 1 302 -9 270 203 27 14 chr3 148983866 148983940 -69053218 - AluS SINE Alu -226 76 2 1334 195 86 0 chr3 148983978 148984234 -69052924 + AluJo SINE Alu 6 283 -29 1989 77 63 25 chr3 148984417 148984702 -69052456 + AluY SINE Alu 1 296 -15 2355 94 0 3 chr3 148984815 148985113 -69052045 - AluSc SINE Alu -12 297 1 936 259 20 16 chr3 148985300 148985555 -69051603 + MIR SINE MIR 2 257 -5 22 0 0 0 chr3 148985843 148985865 -69051293 + AT_rich Low_complexity Low_complexity 1 22 0 706 118 16 79 chr3 148986969 148987096 -69050062 + AluSg/x SINE Alu 171 289 -23 872 200 29 41 chr3 148987123 148987212 -69049946 + Charlie2 DNA MER1_type 2621 2710 -152 2518 27 10 7 chr3 148987212 148987508 -69049650 - AluY SINE Alu -14 297 1 872 200 29 41 chr3 148987508 148987663 -69049495 + Charlie2 DNA MER1_type 2710 2862 0 2003 163 3 0 chr3 148987699 148988006 -69049152 - AluJb SINE Alu -4 308 1 2023 110 0 4 chr3 148988403 148988698 -69048460 - AluSx SINE Alu 0 306 13 568 212 9 9 chr3 148988729 148988842 -69048316 + MER81 DNA DNA 2 114 0 21 0 0 0 chr3 148989274 148989295 -69047863 + GC_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chr3 148989322 148989359 -69047799 + GC_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr3 148989409 148989430 -69047728 + GC_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 148989559 148989582 -69047576 + GC_rich Low_complexity Low_complexity 1 23 0 1226 179 38 38 chr3 148989762 148990025 -69047133 + L1PB4 LINE L1 5855 6117 -39 2185 97 19 13 chr3 148990025 148990333 -69046825 + AluSx SINE Alu 3 312 0 947 174 19 0 chr3 148990887 148991048 -69046110 - AluJo SINE Alu -148 164 1 2155 98 0 4 chr3 148991444 148991741 -69045417 - AluSx SINE Alu 0 306 11 568 212 9 9 chr3 148991769 148991882 -69045276 + MER81 DNA DNA 2 114 0 3363 128 29 18 chr3 148992285 148992875 -69044283 + L1PA16 LINE L1 5231 5827 -339 1368 177 16 4 chr3 148992877 148993120 -69044038 + AluSx SINE Alu 39 284 -28 1685 155 98 7 chr3 148993891 148994188 -69042970 + MSTB LTR MaLR 1 324 -102 493 125 0 38 chr3 148994195 148994275 -69042883 + L1PA15-16 LINE L1 1536 1612 -5237 4549 118 6 5 chr3 148994275 148994944 -69042214 + L1PA16 LINE L1 5497 6166 0 253 127 0 18 chr3 148994972 148995027 -69042131 + L1MA3 LINE L1 6130 6183 -122 542 124 0 0 chr3 148995172 148995261 -69041897 - AluS SINE Alu 0 310 222 4953 21 0 3 chr3 148995403 148995971 -69041187 + L1HS LINE L1 5589 6154 -1 2736 145 92 12 chr3 148995990 148996492 -69040666 + L1MC/D LINE L1 5254 5795 -564 458 158 53 3 chr3 148996492 148996580 -69040578 + MLT1D LTR MaLR 300 507 -101 3279 193 129 35 chr3 148996587 148996897 -69040261 - L1MC4a LINE L1 -4 7804 7525 2432 88 0 0 chr3 148996897 148997193 -69039965 - AluSc SINE Alu -13 296 1 3279 193 129 35 chr3 148997193 148997773 -69039385 - L1MC4a LINE L1 -283 7525 6830 1382 187 0 15 chr3 148997783 148998045 -69039113 - L1MD3 LINE L1 0 7995 7738 528 170 66 0 chr3 148998059 148998165 -69038993 - L1MC4a LINE L1 -964 6844 6732 495 231 46 23 chr3 148998175 148998305 -69038853 + MER5B DNA MER1_type 44 176 -2 409 287 70 25 chr3 148998895 148999052 -69038106 + MIR SINE MIR 20 183 -79 2526 75 7 0 chr3 148999219 148999525 -69037633 + AluSc SINE Alu 1 308 -1 299 268 164 27 chr3 148999700 148999920 -69037238 - MIR SINE MIR 0 262 13 276 91 0 0 chr3 149000712 149000756 -69036402 + (GA)n Simple_repeat Simple_repeat 2 45 0 332 273 42 42 chr3 149002049 149002192 -69034966 + L1MC4a LINE L1 5930 6072 -1736 297 291 148 106 chr3 149002453 149002690 -69034468 - L2 LINE L2 0 3272 3026 396 301 63 68 chr3 149002748 149003336 -69033822 - L2 LINE L2 -407 2907 2323 513 242 121 18 chr3 149003393 149003558 -69033600 + MIR SINE MIR 72 253 -9 304 321 38 46 chr3 149003824 149004067 -69033091 - MIR SINE MIR -4 258 14 484 163 81 0 chr3 149005114 149005200 -69031958 + MER96 DNA MER1_type? 1 93 -82 2213 80 3 13 chr3 149005465 149005767 -69031391 - AluSp SINE Alu -14 299 1 214 330 179 0 chr3 149006540 149006764 -69030394 - L3 LINE CR1 -1116 461 198 2216 188 41 9 chr3 149007632 149008074 -69029084 + MER65C LTR ERV1 1 456 -5 657 199 96 0 chr3 149008152 149008308 -69028850 - Charlie8 DNA MER1_type -2215 202 32 201 339 0 0 chr3 149008974 149009033 -69028125 + MIR SINE MIR 29 87 -121 24 77 0 0 chr3 149009777 149009829 -69027329 + AT_rich Low_complexity Low_complexity 1 52 0 32 26 0 0 chr3 149010138 149010177 -69026981 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr3 149010804 149010832 -69026326 + AT_rich Low_complexity Low_complexity 1 28 0 497 252 144 27 chr3 149011478 149011689 -69025469 - MIR SINE MIR -2 260 34 719 293 52 21 chr3 149011903 149012193 -69024965 - MER102a DNA MER1_type -1 329 31 189 356 67 44 chr3 149013195 149013330 -69023828 + MIR3 SINE MIR 5 142 -66 436 248 35 35 chr3 149014645 149014786 -69022372 + L2 LINE L2 3168 3308 -5 2389 95 0 3 chr3 149015250 149015555 -69021603 + AluSc SINE Alu 1 304 -5 296 350 80 22 chr3 149015851 149015988 -69021170 + L2 LINE L2 3076 3220 -52 260 300 70 57 chr3 149016135 149016365 -69020793 + L2 LINE L2 2188 2420 -894 2042 267 82 62 chr3 149016389 149017383 -69019775 + L1MB5 LINE L1 1 1014 -5528 4746 207 135 27 chr3 149017385 149017530 -69019628 + L1MB5 LINE L1 1849 1977 -4667 2179 94 7 3 chr3 149017530 149017818 -69019340 + AluSg SINE Alu 1 289 -21 4746 207 135 27 chr3 149017818 149018240 -69018918 + L1MB5 LINE L1 1977 2352 -4292 1945 140 0 37 chr3 149018240 149018561 -69018597 + AluSx SINE Alu 3 311 -1 4746 207 135 27 chr3 149018561 149018823 -69018335 + L1MB5 LINE L1 2352 2584 -4060 2177 110 7 0 chr3 149018823 149019115 -69018043 + AluSx SINE Alu 1 294 -18 4746 207 135 27 chr3 149019115 149019505 -69017653 + L1MB5 LINE L1 2584 2930 -3714 1851 149 0 56 chr3 149019505 149019828 -69017330 + AluJo SINE Alu 1 305 -7 4746 207 135 27 chr3 149019828 149020768 -69016390 + L1MB5 LINE L1 2930 4244 -2400 3070 182 91 2 chr3 149020769 149021363 -69015795 + MER82 DNA MER2_type 1 647 -6 6340 181 80 20 chr3 149021369 149023327 -69013831 + L1MB5 LINE L1 4244 6360 -312 2424 89 0 0 chr3 149023327 149023629 -69013529 + AluSx SINE Alu 1 302 -10 6340 181 80 20 chr3 149023629 149023962 -69013196 + L1MB5 LINE L1 6360 6672 0 217 254 52 68 chr3 149024087 149024260 -69012898 + L2 LINE L2 2630 3272 0 1661 126 8 0 chr3 149024468 149024707 -69012451 + AluSx SINE Alu 1 241 -71 226 114 29 0 chr3 149024708 149024743 -69012415 - MLT1A1 LTR MaLR -329 36 1 231 282 66 0 chr3 149024880 149024950 -69012208 + MIR SINE MIR 42 115 -93 1141 77 33 82 chr3 149024988 149025082 -69012076 + L1PA14 LINE L1 5989 6071 -90 2283 109 0 0 chr3 149025082 149025384 -69011774 + AluSx SINE Alu 1 302 -10 1141 77 33 82 chr3 149025384 149025471 -69011687 + L1PA14 LINE L1 6071 6161 0 1078 182 62 83 chr3 149025667 149025761 -69011397 - Charlie2 DNA MER1_type -245 2617 2523 2229 108 0 3 chr3 149025761 149026056 -69011102 - AluSg SINE Alu -16 294 1 1078 182 62 83 chr3 149026056 149026185 -69010973 - Charlie2 DNA MER1_type -339 2523 2393 2424 72 0 0 chr3 149026185 149026502 -69010656 - AluY SINE Alu 0 317 1 1078 182 62 83 chr3 149026502 149026892 -69010266 - Charlie2 DNA MER1_type -469 2393 1857 366 83 42 0 chr3 149026923 149026995 -69010163 + (CA)n Simple_repeat Simple_repeat 2 76 0 564 295 30 60 chr3 149027014 149027182 -69009976 - Charlie2 DNA MER1_type -2522 260 101 1908 139 33 10 chr3 149027182 149027484 -69009674 - AluSx SINE Alu -3 309 1 564 295 30 60 chr3 149027484 149027583 -69009575 - Charlie2 DNA MER1_type -2681 101 1 878 323 41 64 chr3 149028101 149028418 -69008740 - L2 LINE L2 -606 2708 2385 2605 126 67 12 chr3 149028418 149028824 -69008334 + MSTA LTR MaLR 1 428 0 878 323 41 64 chr3 149028824 149029221 -69007937 - L2 LINE L2 -929 2385 2011 2185 106 0 10 chr3 149029262 149029563 -69007595 - AluSx SINE Alu -14 298 1 2364 102 0 0 chr3 149029565 149029869 -69007289 - AluSg SINE Alu -5 305 2 397 321 31 16 chr3 149029897 149030090 -69007068 + L2 LINE L2 1698 1893 -1421 1308 253 83 34 chr3 149030132 149030540 -69006618 - LTR16C LTR ERVL -63 428 1 225 119 0 0 chr3 149031247 149031289 -69005869 + (TG)n Simple_repeat Simple_repeat 1 42 0 261 57 0 0 chr3 149031289 149031324 -69005834 + (GA)n Simple_repeat Simple_repeat 2 36 0 311 228 13 25 chr3 149031498 149031577 -69005581 - HAL1 LINE L1 -1659 848 771 * 1284 222 98 66 chr3 149031575 149032148 -69005010 - HAL1 LINE L1 -994 1513 923 842 208 43 100 chr3 149032156 149032387 -69004771 - AluJo SINE Alu -92 220 3 1904 120 3 11 chr3 149032672 149032955 -69004203 + MER31A LTR ERV1 1 281 -204 2183 119 10 6 chr3 149032959 149033270 -69003888 - AluSx SINE Alu 0 312 1 647 250 31 46 chr3 149033303 149033504 -69003654 - MIR3 SINE MIR -2 206 6 36 23 0 0 chr3 149034021 149034064 -69003094 + AT_rich Low_complexity Low_complexity 1 43 0 548 285 57 5 chr3 149034438 149034631 -69002527 + MLT1K LTR MaLR 340 542 -46 1508 154 37 11 chr3 149034664 149034936 -69002222 + AluSx SINE Alu 14 292 -20 1773 177 0 20 chr3 149035747 149036047 -69001111 - AluJo SINE Alu -18 294 1 393 57 0 0 chr3 149036058 149036111 -69001047 - L1MB4 LINE L1 0 6180 6128 2026 133 7 0 chr3 149036204 149036497 -69000661 - AluSg SINE Alu -15 295 1 2264 107 7 0 chr3 149036669 149036969 -69000189 - AluSq SINE Alu -6 307 6 2451 76 0 13 chr3 149037590 149037904 -68999254 - AluY SINE Alu -1 310 1 204 40 0 0 chr3 149038285 149038310 -68998848 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 699 144 0 10 chr3 149038310 149038414 -68998744 - AluSg/x SINE Alu -32 280 178 1869 134 58 3 chr3 149038449 149038740 -68998418 + AluSx SINE Alu 5 311 -1 531 155 13 18 chr3 149038808 149038823 -68998335 - LTR54 LTR ERV1 -7 495 481 2202 122 0 0 chr3 149038823 149039117 -68998041 + AluSx SINE Alu 1 294 -18 531 155 13 18 chr3 149039117 149039212 -68997946 - LTR54 LTR ERV1 -21 481 385 4394 151 10 103 chr3 149039213 149039730 -68997428 - L1MB3 LINE L1 -40 6143 5580 1900 151 33 10 chr3 149039730 149040035 -68997123 + AluSx SINE Alu 1 312 0 4394 151 10 103 chr3 149040035 149040117 -68997041 - L1MB3 LINE L1 -603 5580 5492 2631 126 96 5 chr3 149040117 149040515 -68996643 - MER61C LTR ERV1 0 434 1 4394 151 10 103 chr3 149040515 149040730 -68996428 - L1MB3 LINE L1 -691 5492 5259 2257 100 3 0 chr3 149040730 149041030 -68996128 - AluY SINE Alu -10 301 1 2340 106 0 0 chr3 149041033 149041334 -68995824 - AluSx SINE Alu -11 301 1 4394 151 10 103 chr3 149041334 149041397 -68995761 - L1MB3 LINE L1 -926 5257 5190 1811 146 34 17 chr3 149041397 149041692 -68995466 - AluJo SINE Alu -12 300 1 4394 151 10 103 chr3 149041692 149041973 -68995185 - L1MB3 LINE L1 -993 5190 5063 2326 105 3 6 chr3 149041973 149042287 -68994871 - AluSq SINE Alu 0 313 1 4394 151 10 103 chr3 149042287 149042355 -68994803 - L1MB3 LINE L1 -1120 5063 4990 1201 143 5 0 chr3 149042357 149042546 -68994612 - Tigger2 DNA MER2_type -51 2667 2478 432 131 0 0 chr3 149042546 149042607 -68994551 - AluS SINE Alu -256 62 2 2049 118 10 80 chr3 149042608 149042706 -68994452 - Tigger2 DNA MER2_type -2356 362 259 2159 103 28 0 chr3 149042706 149042996 -68994162 - AluSg SINE Alu -12 298 1 2049 118 10 80 chr3 149042996 149043016 -68994142 - Tigger2 DNA MER2_type -2459 259 239 2181 93 43 0 chr3 149043016 149043296 -68993862 - AluSg SINE Alu -18 292 1 2049 118 10 80 chr3 149043296 149043565 -68993593 - Tigger2 DNA MER2_type -2479 239 1 2162 131 3 6 chr3 149043821 149044134 -68993024 - AluSx SINE Alu 0 312 1 2237 95 3 16 chr3 149044385 149044553 -68992605 - AluSp SINE Alu -13 300 136 2362 77 0 7 chr3 149044553 149044850 -68992308 - AluY SINE Alu -16 295 1 2237 95 3 16 chr3 149044850 149044985 -68992173 - AluSp SINE Alu -177 136 1 563 284 100 57 chr3 149045036 149045335 -68991823 + MLT1K LTR MaLR 261 572 -16 765 243 147 4 chr3 149046584 149046973 -68990185 - LTR33 LTR ERVL -41 480 3 225 212 15 15 chr3 149049583 149049649 -68987509 - HAL1b LINE L1 0 1348 1283 282 261 70 0 chr3 149049769 149049884 -68987274 - L1ME LINE L1 -297 5824 5702 * 1076 153 0 138 chr3 149049875 149049928 -68987230 - L1MB1 LINE L1 -3 6165 6106 1830 124 59 0 chr3 149049928 149050201 -68986957 - AluSx SINE Alu -21 291 3 1076 153 0 138 chr3 149050201 149050415 -68986743 - L1MB1 LINE L1 -62 6106 5935 15444 136 21 60 chr3 149050438 149050783 -68986375 - L1MA2 LINE L1 0 7723 7366 2245 99 0 23 chr3 149050783 149051085 -68986073 - AluSq SINE Alu -17 296 2 15444 136 21 60 chr3 149051085 149052050 -68985108 - L1MA2 LINE L1 -357 7366 6365 2125 79 0 62 chr3 149052050 149052355 -68984803 - AluSg SINE Alu -4 306 21 15444 136 21 60 chr3 149052355 149053232 -68983926 - L1MA2 LINE L1 -1358 6365 5456 2393 77 0 16 chr3 149053232 149053543 -68983615 - L1PA6 LINE L1 -13 6141 5836 15444 136 21 60 chr3 149053543 149053713 -68983445 - L1MA2 LINE L1 -2267 5456 5281 1958 143 3 7 chr3 149053713 149054013 -68983145 - AluSx SINE Alu -13 299 1 15444 136 21 60 chr3 149054013 149054491 -68982667 - L1MA2 LINE L1 -2442 5281 4786 2204 90 0 10 chr3 149054491 149054801 -68982357 - AluY SINE Alu 0 311 8 15444 136 21 60 chr3 149054801 149055104 -68982054 - L1MA2 LINE L1 -2937 4786 4473 1719 169 36 7 chr3 149055104 149055405 -68981753 - AluJb SINE Alu -2 310 1 15444 136 21 60 chr3 149055405 149055441 -68981717 - L1MA2 LINE L1 -3250 4473 4437 681 52 0 42 chr3 149055441 149055537 -68981621 - SVA Other Other 0 1386 1295 15444 136 21 60 chr3 149055537 149055685 -68981473 - L1MA2 LINE L1 -3286 4437 4285 1602 189 0 4 chr3 149055685 149055955 -68981203 - AluJo SINE Alu -13 299 31 15444 136 21 60 chr3 149055955 149056305 -68980853 - L1MA2 LINE L1 -3438 4285 3923 1941 133 31 3 chr3 149056305 149056598 -68980560 - AluSx SINE Alu -11 301 1 15444 136 21 60 chr3 149056598 149057700 -68979458 - L1MA2 LINE L1 -3800 3923 2780 2224 90 3 0 chr3 149057700 149057989 -68979169 - AluSg SINE Alu -18 292 3 15444 136 21 60 chr3 149057989 149058572 -68978586 - L1MA2 LINE L1 -4943 2780 2479 2323 94 10 13 chr3 149058572 149058747 -68978411 - AluSc SINE Alu -3 306 131 2437 81 0 3 chr3 149058747 149059054 -68978104 - AluY SINE Alu -5 306 1 2323 94 10 13 chr3 149059054 149059185 -68977973 - AluSc SINE Alu -178 131 1 15444 136 21 60 chr3 149059185 149059345 -68977813 - L1MA2 LINE L1 -5244 2479 2314 231 302 110 39 chr3 149059843 149060025 -68977133 - L2 LINE L2 0 3313 3119 582 282 40 0 chr3 149060177 149060351 -68976807 + MIR SINE MIR 32 212 -50 2407 72 0 3 chr3 149060492 149060785 -68976373 - AluY SINE Alu -19 292 1 346 273 53 33 chr3 149060981 149061131 -68976027 + L2 LINE L2 3161 3313 0 2473 70 0 3 chr3 149061258 149061560 -68975598 + AluY SINE Alu 1 301 -10 1727 151 123 0 chr3 149061561 149061893 -68975265 + L1MB5 LINE L1 5802 6174 0 203 296 63 59 chr3 149061945 149062191 -68974967 + L2 LINE L2 2551 3272 0 1660 126 8 0 chr3 149062399 149062638 -68974520 + AluSx SINE Alu 1 241 -71 270 226 88 186 chr3 149062811 149062919 -68974239 + MIR SINE MIR 42 112 -150 1054 77 33 82 chr3 149062919 149063013 -68974145 + L1PA14 LINE L1 5989 6071 -90 2283 109 0 0 chr3 149063013 149063315 -68973843 + AluSx SINE Alu 1 302 -10 1054 77 33 82 chr3 149063315 149063402 -68973756 + L1PA14 LINE L1 6071 6161 0 270 226 88 186 chr3 149063402 149063540 -68973618 + MIR SINE MIR 112 262 0 1938 135 7 10 chr3 149063591 149063888 -68973270 + AluSx SINE Alu 1 296 -16 493 370 142 14 chr3 149064223 149064729 -68972429 - L3 LINE CR1 -388 1189 619 384 234 69 69 chr3 149064869 149065014 -68972144 - MIR3 SINE MIR -15 193 49 21 0 0 0 chr3 149065055 149065076 -68972082 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr3 149065102 149065134 -68972024 + AT_rich Low_complexity Low_complexity 1 32 0 2243 119 3 0 chr3 149065458 149065761 -68971397 - AluSx SINE Alu -8 304 1 218 268 205 36 chr3 149065867 149065979 -68971179 + L2 LINE L2 3183 3313 0 22 35 0 0 chr3 149067309 149067338 -68969820 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 149067711 149067732 -68969426 + AT_rich Low_complexity Low_complexity 1 21 0 735 220 0 0 chr3 149068367 149068499 -68968659 + FLAM_A SINE Alu 1 132 -1 216 0 0 0 chr3 149068713 149068737 -68968421 + (T)n Simple_repeat Simple_repeat 1 24 0 339 267 148 61 chr3 149069679 149069780 -68967378 + L1M4 LINE L1 2234 2325 -3821 2006 105 14 0 chr3 149069780 149070056 -68967102 + AluSx SINE Alu 1 280 -32 204 40 0 0 chr3 149070056 149070081 -68967077 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 339 267 148 61 chr3 149070081 149070327 -68966831 + L1M4 LINE L1 2325 2548 -3598 2172 113 0 3 chr3 149070327 149070629 -68966529 + AluSx SINE Alu 1 301 -11 339 267 148 61 chr3 149070629 149071020 -68966138 + L1M4 LINE L1 2548 3039 -3107 2269 73 0 3 chr3 149071024 149071333 -68965825 + AluY SINE Alu 1 308 0 23 0 0 0 chr3 149071333 149071356 -68965802 + AT_rich Low_complexity Low_complexity 1 23 0 3407 152 87 13 chr3 149071415 149072126 -68965032 + L1MD1 LINE L1 5290 6053 -189 529 148 63 63 chr3 149072133 149072275 -68964883 + L1MD2 LINE L1 6218 6359 0 374 313 91 17 chr3 149072281 149072457 -68964701 + L1MC/D LINE L1 5354 5542 -700 227 127 127 16 chr3 149072508 149072571 -68964587 - L1MC5 LINE L1 -54 7907 7838 805 73 121 0 chr3 149072714 149072838 -68964320 + MER85 DNA T2_type 1 139 0 333 204 93 0 chr3 149072871 149072979 -68964179 - Charlie4 DNA MER1_type -37 1924 1807 417 247 142 23 chr3 149073099 149073318 -68963840 - L1MC5 LINE L1 -391 7570 7326 249 270 0 0 chr3 149073496 149073570 -68963588 - L1MC4 LINE L1 -790 7252 7179 339 277 58 32 chr3 149073682 149073837 -68963321 - L1MC4a LINE L1 -1542 6266 6108 1964 78 3 21 chr3 149074003 149074323 -68962835 - AluY SINE Alu 0 317 3 21 0 0 0 chr3 149074360 149074381 -68962777 + AT_rich Low_complexity Low_complexity 1 21 0 279 157 0 0 chr3 149074445 149074496 -68962662 + (CA)n Simple_repeat Simple_repeat 2 52 0 1209 241 68 40 chr3 149074515 149075072 -68962086 - L1MC4a LINE L1 -1915 5893 5321 774 227 57 55 chr3 149075074 149075471 -68961687 + MER67B LTR ERV1 104 409 -252 2267 88 3 7 chr3 149075512 149075809 -68961349 + AluSc SINE Alu 1 296 -13 568 136 87 0 chr3 149075887 149075990 -68961168 + MER67A LTR ERV1 432 543 0 308 273 23 11 chr3 149076111 149076199 -68960959 + L1MDb LINE L1 748 836 -5573 682 214 42 6 chr3 149076201 149076369 -68960789 - HAL1 LINE L1 -737 1770 1597 548 100 90 10 chr3 149076380 149076480 -68960678 + L1MB3 LINE L1 6004 6111 -72 882 157 0 7 chr3 149076510 149076663 -68960495 - MLT1B LTR MaLR -238 152 1 321 197 45 0 chr3 149078045 149078111 -68959047 + Charlie1 DNA MER1_type 50 118 -2643 891 205 113 68 chr3 149078229 149078610 -68958548 - L1ME1 LINE L1 -4 6162 5765 329 259 50 65 chr3 149078619 149078758 -68958400 + HAL1 LINE L1 2042 2178 -329 1124 179 120 56 chr3 149078785 149078808 -68958350 + MER2 DNA MER2_type 1 21 -324 1487 93 70 0 chr3 149078808 149079022 -68958136 + MER30 DNA MER1_type 1 229 -1 1124 179 120 56 chr3 149079022 149079322 -68957836 + MER2 DNA MER2_type 21 345 0 1238 94 144 5 chr3 149080253 149080455 -68956703 + MER30 DNA MER1_type 1 230 0 376 300 54 23 chr3 149080673 149080803 -68956355 + MIR3 SINE MIR 47 180 -28 767 117 78 0 chr3 149081085 149081213 -68955945 + MSTB1 LTR MaLR 20 157 -275 768 151 144 93 chr3 149081389 149081570 -68955588 + MSTA LTR MaLR 1 171 -193 2284 111 0 0 chr3 149081570 149081876 -68955282 + AluSx SINE Alu 1 306 -6 768 151 144 93 chr3 149081876 149082029 -68955129 + MSTA LTR MaLR 171 364 0 2217 148 56 10 chr3 149082429 149082841 -68954317 - MSTB1 LTR MaLR -1 431 1 6179 167 102 48 chr3 149083097 149083637 -68953521 + L1M4c LINE L1 19 528 -5856 2278 51 29 0 chr3 149083637 149083953 -68953205 + AluY SINE Alu 1 324 0 6179 167 102 48 chr3 149083953 149084029 -68953129 + L1M4c LINE L1 528 598 -5786 1703 169 53 0 chr3 149084029 149084313 -68952845 + AluJo SINE Alu 1 299 -13 6179 167 102 48 chr3 149084313 149084639 -68952519 + L1M4c LINE L1 598 905 -5479 1456 202 19 50 chr3 149084639 149084956 -68952202 + AluJo SINE Alu 1 307 -5 6179 167 102 48 chr3 149084956 149085216 -68951942 + L1M4c LINE L1 905 1149 -5235 1680 102 0 4 chr3 149085216 149085441 -68951717 + AluSg/x SINE Alu 84 307 -5 6179 167 102 48 chr3 149085441 149085861 -68951297 + L1M4c LINE L1 1149 1733 -4651 5145 144 52 6 chr3 149085863 149086948 -68950210 + L1MA7 LINE L1 5151 6286 -5 2014 183 76 42 chr3 149086970 149088059 -68949099 + L1M4c LINE L1 1719 2949 -3433 912 207 61 29 chr3 149088399 149088745 -68948413 - MSTD LTR MaLR 0 396 1 316 273 76 30 chr3 149088815 149088947 -68948211 + MLT1J LTR MaLR 5 142 -369 21 71 0 0 chr3 149089278 149089320 -68947838 + AT_rich Low_complexity Low_complexity 1 42 0 11763 165 35 111 chr3 149089835 149091188 -68945970 + L1MA4A LINE L1 2 1455 -5394 856 108 0 0 chr3 149091188 149091299 -68945859 + FLAM_C SINE Alu 1 111 -32 11763 165 35 111 chr3 149091299 149091673 -68945485 + L1MA4A LINE L1 1455 1856 -4993 1849 177 3 3 chr3 149091673 149091973 -68945185 + AluJo SINE Alu 1 300 -12 11763 165 35 111 chr3 149091973 149092045 -68945113 + L1MA4A LINE L1 1856 1932 -4917 625 186 73 8 chr3 149092045 149092169 -68944989 + AluSq/x SINE Alu 1 132 -180 11763 165 35 111 chr3 149092169 149092274 -68944884 + L1MA4A LINE L1 1932 2043 -4806 1772 149 3 52 chr3 149092274 149092602 -68944556 + AluSx SINE Alu 1 312 0 11763 165 35 111 chr3 149092602 149093150 -68944008 + L1MA4A LINE L1 2043 2425 -4424 2053 143 7 0 chr3 149093150 149093436 -68943722 + AluSx SINE Alu 1 288 -24 11763 165 35 111 chr3 149093436 149093871 -68943287 + L1MA4A LINE L1 2425 2891 -3958 2121 112 0 7 chr3 149093876 149094163 -68942995 + AluSq SINE Alu 1 285 -28 1875 226 7 4 chr3 149094221 149094681 -68942477 + L1MA4A LINE L1 2915 3375 -3473 1203 146 25 12 chr3 149094705 149094945 -68942213 - L1 LINE L1 -1816 4330 4088 8033 172 71 33 chr3 149094962 149095108 -68942050 + L1MA4A LINE L1 3385 3524 -3324 2052 146 10 0 chr3 149095108 149095417 -68941741 + AluSx SINE Alu 1 312 0 8033 172 71 33 chr3 149095417 149097366 -68939792 + L1MA4A LINE L1 3524 5559 -1289 248 68 45 0 chr3 149097389 149097433 -68939725 + L1MA4A LINE L1 5859 5904 -944 220 205 0 72 chr3 149098147 149098230 -68938928 + A-rich Low_complexity Low_complexity 2 78 0 2097 101 38 3 chr3 149099198 149099485 -68937673 - AluSx SINE Alu -11 301 5 5562 134 21 16 chr3 149099913 149100211 -68936947 + L1MA4A LINE L1 5890 6185 -820 2007 135 3 25 chr3 149100211 149100530 -68936628 + AluSx SINE Alu 1 312 0 5562 134 21 16 chr3 149100530 149100804 -68936354 + L1MA4A LINE L1 6185 6456 -549 1280 141 186 38 chr3 149100804 149101067 -68936091 + AluJo SINE Alu 1 302 0 5562 134 21 16 chr3 149101067 149101601 -68935557 + L1MA4A LINE L1 6456 7005 0 2131 138 3 0 chr3 149101738 149102049 -68935109 + AluSx SINE Alu 1 312 0 23 0 0 0 chr3 149102267 149102290 -68934868 + AT_rich Low_complexity Low_complexity 1 23 0 260 122 0 0 chr3 149102329 149102370 -68934788 - L1ME1 LINE L1 -223 5943 5903 2161 98 3 11 chr3 149102428 149102737 -68934421 + AluSp SINE Alu 2 308 0 311 335 19 33 chr3 149102905 149103120 -68934038 + MERVL LTR ERVL 4362 4573 -912 629 322 105 13 chr3 149103199 149103572 -68933586 + MERVL LTR ERVL 4716 5122 -642 1557 101 65 1 chr3 149103919 149104303 -68932855 + L1PB1 LINE L1 5105 5510 -641 2234 79 94 15 chr3 149104307 149104422 -68932736 + L1PB1 LINE L1 5584 5688 -463 288 0 0 0 chr3 149104422 149104454 -68932704 + (CA)n Simple_repeat Simple_repeat 2 33 0 2234 79 94 15 chr3 149104454 149104781 -68932377 + L1PB1 LINE L1 5688 6147 -4 928 194 144 96 chr3 149104839 149105194 -68931964 - MLT1D LTR MaLR 0 505 134 4008 169 52 43 chr3 149105201 149105382 -68931776 + L1MB3 LINE L1 5109 5287 -896 210 37 0 0 chr3 149105382 149105409 -68931749 + (CAA)n Simple_repeat Simple_repeat 1 27 0 1753 196 7 3 chr3 149105414 149105715 -68931443 + AluJo SINE Alu 1 302 -10 4008 169 52 43 chr3 149105715 149106164 -68930994 + L1MB3 LINE L1 5290 5752 -431 2127 102 3 7 chr3 149106164 149106449 -68930709 + AluSq SINE Alu 1 284 -29 4008 169 52 43 chr3 149106449 149106877 -68930281 + L1MB3 LINE L1 5752 6175 -8 597 210 28 7 chr3 149106885 149107051 -68930107 + L1MB8 LINE L1 5679 5849 -319 3913 129 66 79 chr3 149107051 149108038 -68929120 + pTR5 LTR ERV1 760 2025 -413 361 174 41 31 chr3 149108038 149108136 -68929022 + LTR30 LTR ERV1 544 642 -80 1377 112 49 0 chr3 149108137 149108360 -68928798 + LTR12 LTR ERV1 480 713 -1 1528 162 19 77 chr3 149108360 149108408 -68928750 + L1MB8 LINE L1 5826 5875 -303 1647 149 12 84 chr3 149108408 149108743 -68928415 + AluJb SINE Alu 2 312 0 1528 162 19 77 chr3 149108743 149108951 -68928207 + L1MB8 LINE L1 5875 6057 -121 1806 96 0 4 chr3 149108951 149109191 -68927967 + AluSc SINE Alu 55 293 -16 1528 162 19 77 chr3 149109191 149109297 -68927861 + L1MB8 LINE L1 6057 6168 -10 2345 100 0 3 chr3 149109356 149109667 -68927491 + AluSg SINE Alu 1 310 0 467 215 278 14 chr3 149109725 149109869 -68927289 + MIR SINE MIR 52 233 -29 821 253 0 0 chr3 149110267 149110437 -68926721 + FAM SINE Alu 1 170 -5 2362 103 0 19 chr3 149110455 149110774 -68926384 + AluSq SINE Alu 1 313 0 1899 179 52 3 chr3 149110981 149111306 -68925852 - MER2 DNA MER2_type 0 344 4 264 246 78 78 chr3 149111850 149111995 -68925163 - MIR SINE MIR -10 252 105 1198 197 176 8 chr3 149111995 149112239 -68924919 + AluSg SINE Alu 2 286 -14 264 246 78 78 chr3 149112239 149112272 -68924886 - MIR SINE MIR -156 106 74 388 210 155 75 chr3 149112293 149112493 -68924665 - L1MC5 LINE L1 -35 7926 7711 2248 117 0 0 chr3 149112581 149112880 -68924278 + AluSx SINE Alu 4 302 -10 1614 151 83 0 chr3 149112883 149113161 -68923997 + AluSx SINE Alu 4 304 -8 427 343 137 30 chr3 149113910 149114348 -68922810 - L2 LINE L2 -9 3304 2820 1938 121 10 10 chr3 149114378 149114667 -68922491 + AluSx SINE Alu 1 289 -23 744 214 34 17 chr3 149114715 149114893 -68922265 + MLT1J2 LTR MaLR 1 181 -269 387 0 0 0 chr3 149115008 149115051 -68922107 + (CA)n Simple_repeat Simple_repeat 2 44 0 4599 150 50 19 chr3 149115200 149116078 -68921080 + L1MB2 LINE L1 5265 6169 -2 2223 101 3 7 chr3 149116082 149116379 -68920779 + AluSg SINE Alu 1 296 -14 512 239 54 143 chr3 149116379 149116689 -68920469 - L2 LINE L2 -684 2630 2357 1300 202 89 21 chr3 149116689 149116971 -68920187 + AluJo SINE Alu 1 301 -1 512 239 54 143 chr3 149116971 149117032 -68920126 - L2 LINE L2 -957 2357 2292 1129 171 58 133 chr3 149117034 149117298 -68919860 - MLT1B LTR MaLR -70 320 38 2422 70 0 3 chr3 149117298 149117596 -68919562 - AluY SINE Alu -14 297 1 3423 63 47 0 chr3 149117596 149118024 -68919134 - L1PA6 LINE L1 0 6154 5707 1129 171 58 133 chr3 149118024 149118104 -68919054 - MLT1B LTR MaLR -350 40 1 305 222 83 0 chr3 149118112 149118184 -68918974 + LTR50 LTR ERVL 714 791 -4 587 248 132 4 chr3 149118193 149118443 -68918715 - HAL1 LINE L1 -1126 1381 1100 450 186 101 31 chr3 149118471 149118600 -68918558 - HAL1 LINE L1 -1574 933 796 281 279 202 33 chr3 149118611 149118794 -68918364 - HAL1 LINE L1 -1816 691 478 1456 136 84 54 chr3 149118887 149119173 -68917985 - L1MB8 LINE L1 -6 6172 5873 2008 147 0 0 chr3 149119173 149119472 -68917686 - AluSx SINE Alu -13 299 1 1456 136 84 54 chr3 149119472 149119517 -68917641 - L1MB8 LINE L1 -305 5873 5831 1175 140 34 5 chr3 149119513 149119720 -68917438 - L1MB8 LINE L1 -263 5915 5703 * 1045 269 94 6 chr3 149119713 149120055 -68917103 - HAL1 LINE L1 -2135 372 1 * 1009 270 108 17 chr3 149120061 149120587 -68916571 - L1M4 LINE L1 -3092 3054 2481 289 333 59 33 chr3 149120568 149120760 -68916398 + L1ME3 LINE L1 5442 5658 -463 * 8718 23 4 0 chr3 149121096 149122130 -68915028 - L1P LINE L1 -2805 3341 2304 2733 13 0 0 chr3 149122128 149122430 -68914728 + L1P LINE L1 4060 4361 -1785 * 226 167 48 0 chr3 149122430 149122472 -68914686 + MLT1B LTR MaLR 347 390 0 947 256 125 41 chr3 149122474 149123009 -68914149 + HAL1 LINE L1 1279 1858 -649 1658 217 62 58 chr3 149123049 149123119 -68914039 + L1ME3 LINE L1 5627 5695 -467 2262 103 0 22 chr3 149123119 149123431 -68913727 + AluSx SINE Alu 1 305 -7 1658 217 62 58 chr3 149123431 149123646 -68913512 + L1ME3 LINE L1 5695 5908 -254 2275 148 61 3 chr3 149123646 149123990 -68913168 - THE1B LTR MaLR 0 364 1 12571 96 2 3 chr3 149123990 149125571 -68911587 - THE1B-int LTR MaLR 0 1580 1 2490 127 28 22 chr3 149125571 149125933 -68911225 - THE1B LTR MaLR 0 364 1 1658 217 62 58 chr3 149125933 149126147 -68911011 + L1ME3 LINE L1 5907 6131 -31 1683 160 10 20 chr3 149126182 149126482 -68910676 - AluJo SINE Alu -13 299 3 180 0 0 0 chr3 149126891 149126911 -68910247 + (T)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr3 149127095 149127116 -68910042 + AT_rich Low_complexity Low_complexity 1 21 0 2156 110 17 0 chr3 149127244 149127534 -68909624 - AluSx SINE Alu -17 295 1 198 0 0 0 chr3 149127548 149127570 -68909588 + (A)n Simple_repeat Simple_repeat 1 22 0 1958 155 13 0 chr3 149128029 149128333 -68908825 - AluSx SINE Alu -3 309 2 1999 135 0 7 chr3 149128346 149128643 -68908515 - AluSx SINE Alu -17 295 1 2113 132 0 0 chr3 149128971 149129266 -68907892 + AluSx SINE Alu 1 295 -17 2210 105 7 0 chr3 149129383 149129677 -68907481 + AluSq SINE Alu 1 296 -17 393 314 102 13 chr3 149129809 149129982 -68907176 + MIR3 SINE MIR 19 208 0 1259 200 134 36 chr3 149130053 149130328 -68906830 + AluJb SINE Alu 1 302 0 222 118 0 0 chr3 149130343 149130377 -68906781 + (CGGA)n Simple_repeat Simple_repeat 3 36 0 * 1066 109 6 6 chr3 149130376 149130550 -68906608 + (GAAA)n Simple_repeat Simple_repeat 3 176 0 2181 115 13 0 chr3 149130686 149130990 -68906168 + AluSx SINE Alu 1 308 -4 2242 116 6 0 chr3 149130992 149131303 -68905855 + AluSp SINE Alu 1 313 0 2136 104 12 58 chr3 149132214 149132343 -68904815 + AluSx SINE Alu 1 134 -178 2482 78 0 0 chr3 149132343 149132652 -68904506 + AluSg1 SINE Alu 1 309 0 2136 104 12 58 chr3 149132652 149132849 -68904309 + AluSx SINE Alu 134 312 0 822 146 7 35 chr3 149132899 149133043 -68904115 - FLAM_C SINE Alu -1 142 3 2176 115 3 10 chr3 149133078 149133392 -68903766 - AluSx SINE Alu 0 312 1 662 160 19 0 chr3 149133896 149134002 -68903156 - FLAM_C SINE Alu -33 110 3 2277 74 10 10 chr3 149134037 149134347 -68902811 - AluSg SINE Alu 0 310 1 2463 54 0 0 chr3 149134441 149134736 -68902422 - AluY SINE Alu -14 297 3 249 297 183 59 chr3 149137021 149137053 -68900105 + L2 LINE L2 2966 2993 -279 2234 59 39 7 chr3 149137053 149137339 -68899819 - AluSc SINE Alu -14 295 1 249 297 183 59 chr3 149137339 149137579 -68899579 + L2 LINE L2 2993 3272 0 2307 171 51 7 chr3 149137690 149138104 -68899054 + MSTB1 LTR MaLR 1 432 0 305 129 81 32 chr3 149138309 149138371 -68898787 + MLT1A2 LTR MaLR 1 65 -309 1922 155 25 52 chr3 149138377 149138744 -68898414 - MER47A DNA MER2_type -1 365 9 1195 221 50 18 chr3 149138740 149139021 -68898137 + MLT1A2 LTR MaLR 74 363 -11 * 188 238 36 83 chr3 149139216 149139300 -68897858 - L2 LINE L2 -67 3246 3167 2225 117 0 3 chr3 149139327 149139634 -68897524 - AluSx SINE Alu -6 306 1 960 138 24 54 chr3 149140056 149140223 -68896935 + AluJo SINE Alu 83 244 -68 316 308 27 7 chr3 149140676 149140822 -68896336 - L1M4c LINE L1 -4811 1796 1648 460 235 23 131 chr3 149140951 149141211 -68895947 - L1M4c LINE L1 -5008 1418 1187 397 233 29 10 chr3 149141228 149141331 -68895827 - ERVL LTR ERVL -3764 2000 1896 346 185 0 0 chr3 149141400 149141465 -68895693 - LTR50 LTR ERVL -120 675 611 1004 236 201 20 chr3 149141508 149141907 -68895251 - LTR50 LTR ERVL -316 479 9 420 247 48 15 chr3 149144666 149144814 -68892344 + L1ME LINE L1 5515 5668 -453 21 36 0 0 chr3 149144963 149144991 -68892167 + AT_rich Low_complexity Low_complexity 1 28 0 2016 120 0 28 chr3 149145161 149145465 -68891693 + AluSx SINE Alu 6 301 0 346 244 12 0 chr3 149145508 149145590 -68891568 + MIR SINE MIR 172 254 -8 2326 116 0 0 chr3 149145767 149146077 -68891081 + AluSx SINE Alu 1 310 -2 326 339 47 74 chr3 149146389 149146837 -68890321 + L2 LINE L2 2326 2761 -553 2436 58 3 13 chr3 149147039 149147348 -68889810 - AluY SINE Alu -5 306 1 1635 166 32 0 chr3 149147572 149147849 -68889309 - AluJb SINE Alu -26 286 1 2237 104 0 13 chr3 149148422 149148738 -68888420 - AluSx SINE Alu 0 312 1 6370 188 73 18 chr3 149148738 149150695 -68886463 - L1M4 LINE L1 -363 6309 4244 3070 182 91 2 chr3 149150701 149151295 -68885863 - MER82 DNA MER2_type -6 647 1 4710 206 136 28 chr3 149151296 149152235 -68884923 - L1M4 LINE L1 -2400 4244 3408 1851 149 0 56 chr3 149152235 149152558 -68884600 - AluJo SINE Alu -7 305 1 4710 206 136 28 chr3 149152558 149152948 -68884210 - L1M4 LINE L1 -3236 3408 3062 2177 110 7 0 chr3 149152948 149153240 -68883918 - AluSx SINE Alu -18 294 1 4710 206 136 28 chr3 149153240 149153502 -68883656 - L1M4 LINE L1 -3582 3062 2830 1945 140 0 37 chr3 149153502 149153823 -68883335 - AluSx SINE Alu -1 311 3 4710 206 136 28 chr3 149153823 149154245 -68882913 - L1M4 LINE L1 -3814 2830 2455 2179 94 7 3 chr3 149154245 149154533 -68882625 - AluSg SINE Alu -21 289 1 4710 206 136 28 chr3 149154533 149154678 -68882480 - L1M4 LINE L1 -4189 2455 1849 2017 266 84 62 chr3 149154680 149155673 -68881485 - L1M4 LINE L1 -5528 1014 1 260 300 70 57 chr3 149155697 149155927 -68881231 - L2 LINE L2 -894 2420 2188 43494 33 22 4 chr3 149156091 149161977 -68875181 - L1HS LINE L1 -157 5998 1 1444 221 141 34 chr3 149161980 149162255 -68874903 - L1M4 LINE L1 -881 5265 5021 180 0 0 0 chr3 149162255 149162275 -68874883 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1444 221 141 34 chr3 149162275 149162320 -68874838 - L1M4 LINE L1 -1125 5021 4982 1733 184 3 13 chr3 149162320 149162635 -68874523 - AluJb SINE Alu 0 312 1 1444 221 141 34 chr3 149162635 149162851 -68874307 - L1M4 LINE L1 -1164 4982 4670 486 0 0 0 chr3 149162852 149162906 -68874252 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 2291 87 0 0 chr3 149162906 149163192 -68873966 - AluY SINE Alu -25 286 1 5211 126 73 22 chr3 149163218 149163372 -68873786 - L1MA4A LINE L1 -39 6966 6821 2395 94 0 0 chr3 149163372 149163671 -68873487 - AluSx SINE Alu -13 299 1 5211 126 73 22 chr3 149163671 149164601 -68872557 - L1MA4A LINE L1 -184 6821 5828 * 11579 205 39 39 chr3 149164595 149165440 -68871718 - L1MA4A LINE L1 -2543 4305 3461 1644 106 0 46 chr3 149165440 149165677 -68871481 + AluSc SINE Alu 1 226 -83 11579 205 39 39 chr3 149165677 149167562 -68869596 - L1MA4A LINE L1 -3387 3461 1576 2265 100 0 0 chr3 149167562 149167877 -68869281 - AluSc SINE Alu 0 315 1 11579 205 39 39 chr3 149167877 149169452 -68867706 - L1MA4A LINE L1 -5272 1576 2 3452 210 100 42 chr3 149169458 149169775 -68867383 - L1M4 LINE L1 -1462 4684 4387 2199 120 0 0 chr3 149169775 149170066 -68867092 - AluSx SINE Alu -21 291 1 3452 210 100 42 chr3 149170066 149170407 -68866751 - L1M4 LINE L1 -1759 4387 4067 2370 91 3 0 chr3 149170407 149170705 -68866453 - AluSx SINE Alu -13 299 1 3452 210 100 42 chr3 149170705 149171196 -68865962 - L1M4 LINE L1 -2079 4067 3467 23 54 0 0 chr3 149171211 149171248 -68865910 + AT_rich Low_complexity Low_complexity 1 37 0 255 236 97 0 chr3 149172179 149172251 -68864907 - MIR SINE MIR -155 107 29 405 305 13 26 chr3 149172259 149172410 -68864748 + MIR SINE MIR 114 262 0 618 121 0 0 chr3 149172532 149172615 -68864543 - AluSg/x SINE Alu -18 291 209 280 244 139 17 chr3 149173324 149173439 -68863719 - L2 LINE L2 -5 3308 3180 251 246 33 0 chr3 149173439 149173500 -68863658 + MER3 DNA MER1_type 27 89 -120 320 0 0 24 chr3 149173500 149173541 -68863617 + (TTAAA)n Simple_repeat Simple_repeat 1 40 0 707 177 16 16 chr3 149173549 149173673 -68863485 - MER3 DNA MER1_type -85 124 1 604 275 160 20 chr3 149173753 149174167 -68862991 - L2 LINE L2 -245 3068 2555 2288 102 0 0 chr3 149175335 149175628 -68861530 - AluSx SINE Alu -19 293 1 259 270 10 20 chr3 149175637 149175737 -68861421 - L2 LINE L2 -607 2707 2609 1992 151 0 6 chr3 149176068 149176379 -68860779 - AluJb SINE Alu -3 309 1 201 39 0 0 chr3 149176996 149177022 -68860136 + (GAATG)n Simple_repeat Simple_repeat 1 26 0 2288 107 3 0 chr3 149177578 149177877 -68859281 - AluSq SINE Alu -13 300 1 610 229 53 12 chr3 149177916 149178086 -68859072 - MER5B DNA MER1_type 0 178 2 268 256 158 75 chr3 149178155 149178214 -68858944 + MIR SINE MIR 76 129 -133 1583 93 166 4 chr3 149178214 149178507 -68858651 + AluYa8 SINE Alu 1 300 0 268 256 158 75 chr3 149178507 149178580 -68858578 + MIR SINE MIR 129 219 -43 215 278 0 0 chr3 149178620 149178674 -68858484 - L3b LINE CR1 -237 1346 1293 4455 115 114 131 chr3 149178964 149180392 -68856766 - pTR5 LTR ERV1 0 2438 743 1925 169 0 16 chr3 149180698 149181012 -68856146 + AluJb SINE Alu 1 309 -3 202 191 24 0 chr3 149181475 149181517 -68855641 - L2 LINE L2 0 3272 3230 203 273 0 0 chr3 149183331 149183375 -68853783 + (TGGA)n Simple_repeat Simple_repeat 3 46 0 1019 228 127 0 chr3 149183452 149183720 -68853438 + L2 LINE L2 3012 3313 0 2358 92 3 7 chr3 149183843 149184149 -68853009 - AluSx SINE Alu -7 305 1 32 67 0 0 chr3 149184951 149185011 -68852147 + AT_rich Low_complexity Low_complexity 1 60 0 232 211 0 35 chr3 149185011 149185068 -68852090 - FLAM SINE Alu -1 132 78 * 325 163 19 0 chr3 149185054 149185111 -68852047 - Alu SINE Alu -249 53 2 905 117 0 29 chr3 149185320 149185457 -68851701 + FLAM_C SINE Alu 1 133 0 305 324 0 9 chr3 149185560 149185665 -68851493 - L1MC4a LINE L1 -1884 5924 5821 2183 84 10 0 chr3 149185665 149185962 -68851196 - L1PA6 LINE L1 -4 6150 5851 2263 112 7 0 chr3 149185970 149186264 -68850894 + AluSx SINE Alu 1 296 -16 2134 70 28 0 chr3 149186382 149186668 -68850490 + L1MA1 LINE L1 6009 6302 0 245 301 0 48 chr3 149186674 149186777 -68850381 - L1MC4a LINE L1 -490 5631 5534 245 246 31 0 chr3 149186817 149186882 -68850276 - MIR SINE MIR -60 148 82 248 236 14 14 chr3 149186994 149187066 -68850092 + MIR SINE MIR 77 148 -114 195 47 23 47 chr3 149188566 149188609 -68848549 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 251 175 35 0 chr3 149188938 149188995 -68848163 - MIR SINE MIR -29 233 175 1494 202 68 88 chr3 149189161 149189325 -68847833 - L1MEc LINE L1 -3454 3086 2920 2145 124 26 3 chr3 149189325 149189631 -68847527 - AluSq SINE Alu 0 313 1 1494 202 68 88 chr3 149189631 149190019 -68847139 - L1MEc LINE L1 -3620 2920 2526 2190 110 14 0 chr3 149190019 149190309 -68846849 - AluSx SINE Alu -18 294 1 1494 202 68 88 chr3 149190309 149190905 -68846253 - L1MEc LINE L1 -4014 2526 1886 707 154 8 31 chr3 149190933 149191063 -68846095 - FLAM_C SINE Alu -16 127 1 534 285 78 27 chr3 149191074 149191330 -68845828 - L1MEc LINE L1 -4692 1848 1580 2005 164 3 0 chr3 149191330 149191635 -68845523 - AluJo SINE Alu -6 306 1 812 131 0 35 chr3 149191636 149191781 -68845377 - AluJo SINE Alu -172 140 1 2330 249 80 61 chr3 149191783 149192892 -68844266 - L1ME LINE L1 -4575 1426 1 8294 66 10 2 chr3 149194027 149195872 -68841286 - L1PA6 LINE L1 -11 6143 4288 22 0 0 0 chr3 149195933 149195955 -68841203 + AT_rich Low_complexity Low_complexity 1 22 0 1664 144 39 126 chr3 149196010 149196077 -68841081 - L1PB4 LINE L1 -13 6153 6082 2265 84 28 0 chr3 149196077 149196363 -68840795 - AluSp SINE Alu -17 296 3 1664 144 39 126 chr3 149196363 149196677 -68840481 - L1PB4 LINE L1 -84 6082 5805 1432 151 0 0 chr3 149196726 149196932 -68840226 - AluJb SINE Alu -106 206 1 582 184 0 161 chr3 149196948 149197165 -68839993 + MLT1E3 LTR MaLR 58 239 -385 2177 116 3 28 chr3 149197262 149197582 -68839576 - AluSx SINE Alu 0 312 1 232 130 39 117 chr3 149197592 149197669 -68839489 + MLT2C2 LTR ERVL 323 393 -71 451 52 0 0 chr3 149197669 149197727 -68839431 - AluSp/q SINE Alu -14 299 242 302 0 26 0 chr3 149198055 149198093 -68839065 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2027 110 11 35 chr3 149198099 149198381 -68838777 - AluSx SINE Alu -37 275 1 1297 188 100 42 chr3 149199045 149199354 -68837804 - MLT2D LTR ERVL -83 331 5 2389 76 3 0 chr3 149199375 149199666 -68837492 + AluSc SINE Alu 1 292 -17 488 185 83 0 chr3 149200001 149200109 -68837049 - L1ME4a LINE L1 -2 6119 6003 338 272 80 0 chr3 149200127 149200252 -68836906 - L1ME4a LINE L1 -188 5933 5799 1992 135 13 10 chr3 149200441 149200752 -68836406 - AluSx SINE Alu 0 312 1 2453 79 0 0 chr3 149200758 149201061 -68836097 - AluY SINE Alu -8 303 1 917 64 0 0 chr3 149201062 149201171 -68835987 - AluSc SINE Alu -14 295 187 2101 130 0 3 chr3 149201318 149201618 -68835540 - AluSx SINE Alu -13 299 1 2004 138 0 7 chr3 149201618 149201907 -68835251 - AluSx SINE Alu -25 287 1 2667 52 3 0 chr3 149201917 149202226 -68834932 - AluY SINE Alu -1 310 1 2327 77 0 7 chr3 149203490 149203821 -68833337 - AluSp SINE Alu 0 329 1 797 141 16 8 chr3 149204143 149204271 -68832887 + AluJo/FLAM SINE Alu 5 133 -169 459 123 0 0 chr3 149204271 149204344 -68832814 + Alu SINE Alu 235 307 -5 2234 110 10 0 chr3 149204345 149204645 -68832513 + AluSx SINE Alu 1 303 -9 444 221 7 15 chr3 149204647 149204783 -68832375 + GA-rich Low_complexity Low_complexity 3 137 0 366 23 0 0 chr3 149206985 149207028 -68830130 + (TA)n Simple_repeat Simple_repeat 1 43 0 1705 137 38 24 chr3 149207133 149207425 -68829733 + AluJb SINE Alu 1 296 -16 623 284 84 4 chr3 149207451 149207726 -68829432 + L1ME4a LINE L1 5588 5884 -237 248 0 31 0 chr3 149208104 149208136 -68829022 + (TG)n Simple_repeat Simple_repeat 2 34 0 5885 198 86 37 chr3 149208926 149209121 -68828037 + L1MC4 LINE L1 6458 6642 -1400 192 40 0 0 chr3 149209121 149209146 -68828012 + (TG)n Simple_repeat Simple_repeat 1 25 0 5885 198 86 37 chr3 149209146 149210458 -68826700 + L1MC4 LINE L1 6642 8039 -3 267 308 26 17 chr3 149210464 149210581 -68826577 + MIR SINE MIR 137 254 -8 203 184 26 0 chr3 149210584 149210622 -68826536 + (ATGGTG)n Simple_repeat Simple_repeat 6 44 0 2061 128 14 0 chr3 149210642 149210938 -68826220 + AluSq SINE Alu 4 303 -10 22 56 0 0 chr3 149211225 149211261 -68825897 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr3 149211336 149211366 -68825792 + AT_rich Low_complexity Low_complexity 1 30 0 382 289 62 67 chr3 149211372 149211459 -68825699 - L3 LINE CR1 -1 1576 1490 1913 167 6 51 chr3 149211459 149211812 -68825346 + MER1B DNA MER1_type 1 337 0 382 289 62 67 chr3 149211812 149211949 -68825209 - L3 LINE CR1 -87 1490 1353 29817 84 8 9 chr3 149212067 149216677 -68820481 - L1P LINE L1 -1533 4613 11 21 0 0 0 chr3 149216762 149216783 -68820375 + AT_rich Low_complexity Low_complexity 1 21 0 644 205 26 13 chr3 149217124 149217275 -68819883 - Charlie8 DNA MER1_type -2195 222 70 1410 153 59 3 chr3 149217378 149217685 -68819473 + MER33 DNA MER1_type 1 324 0 200 326 0 0 chr3 149218185 149218231 -68818927 - L2 LINE L2 -18 3254 3209 1496 159 57 4 chr3 149218295 149218580 -68818578 - AluJo SINE Alu 0 302 4 480 304 14 7 chr3 149219134 149219282 -68817876 + MIR3 SINE MIR 3 151 -57 213 39 0 0 chr3 149219911 149219937 -68817221 + (TGGGGG)n Simple_repeat Simple_repeat 3 28 0 443 250 35 17 chr3 149220976 149221092 -68816066 + MER94 DNA DNA 16 133 -1 224 258 45 123 chr3 149221419 149221574 -68815584 - L2 LINE L2 -88 3225 3083 636 278 67 42 chr3 149221911 149222268 -68814890 + L1MC4 LINE L1 6552 7002 -891 218 176 29 15 chr3 149223681 149223749 -68813409 + (CAA)n Simple_repeat Simple_repeat 2 70 0 2245 68 0 0 chr3 149223755 149224061 -68813097 + AluSx SINE Alu 1 306 0 2201 97 0 0 chr3 149224376 149224675 -68812483 - AluSx SINE Alu -13 299 1 2076 104 0 3 chr3 149224802 149225099 -68812059 - AluSx SINE Alu -8 304 9 925 130 0 0 chr3 149225792 149225930 -68811228 - AluSg/x SINE Alu -21 289 152 14574 34 5 9 chr3 149225948 149228487 -68808671 - L1PA5 LINE L1 0 6154 3623 505 161 8 25 chr3 149229618 149229736 -68807422 + L1MA4 LINE L1 6185 6300 0 357 77 0 0 chr3 149229822 149229874 -68807284 + L1MA6 LINE L1 6249 6300 0 597 275 106 21 chr3 149229983 149230267 -68806891 + L1MC4 LINE L1 6695 7002 -1040 2144 64 53 0 chr3 149230395 149230676 -68806482 + AluY SINE Alu 1 296 -15 310 205 115 0 chr3 149231094 149231172 -68805986 + MER69 DNA AcHobo 1888 1974 -552 522 181 0 0 chr3 149231196 149231301 -68805857 + (CA)n Simple_repeat Simple_repeat 2 106 0 302 182 91 13 chr3 149231301 149231378 -68805780 - L1MCa LINE L1 -4349 2077 1995 241 133 0 22 chr3 149231411 149231456 -68805702 + MER69 DNA AcHobo 1984 2027 -499 1193 85 6 30 chr3 149231563 149231727 -68805431 - MER49 LTR ERV1 -41 882 723 1376 80 11 11 chr3 149231730 149231918 -68805240 - AluSq SINE Alu -105 208 21 2280 258 94 18 chr3 149232254 149232935 -68804223 + MER45C DNA AcHobo 1 733 -220 2064 125 0 3 chr3 149232954 149233265 -68803893 - AluSx SINE Alu -2 310 1 1196 185 35 42 chr3 149233342 149233628 -68803530 + MER45B DNA AcHobo 713 996 -44 230 347 10 0 chr3 149233969 149234067 -68803091 - MER5B DNA MER1_type -21 157 59 296 327 33 13 chr3 149234189 149234339 -68802819 + MIR3 SINE MIR 44 196 -12 676 305 46 36 chr3 149234507 149234754 -68802404 + MIR SINE MIR 2 247 -15 1917 148 6 3 chr3 149236317 149236628 -68800530 - AluJb SINE Alu 0 312 1 4136 101 17 2 chr3 149236788 149237383 -68799775 + L1MA3 LINE L1 5701 6304 -1 1634 195 0 0 chr3 149237917 149238204 -68798954 + AluJb SINE Alu 3 289 -23 1126 203 8 21 chr3 149238454 149238664 -68798494 + AluJo SINE Alu 68 276 -36 2163 112 3 3 chr3 149238664 149238977 -68798181 - AluSp SINE Alu 0 313 1 1126 203 8 21 chr3 149238977 149239008 -68798150 + AluJo SINE Alu 276 306 -6 485 239 5 65 chr3 149239010 149239194 -68797964 + L1MEd LINE L1 1030 1202 -4917 294 29 0 0 chr3 149239522 149239557 -68797601 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 1508 157 73 11 chr3 149239883 149240157 -68797001 - AluJb SINE Alu -17 295 5 2119 113 0 0 chr3 149242916 149243216 -68793942 + AluSx SINE Alu 1 300 -12 2105 119 0 0 chr3 149243449 149243742 -68793416 - AluSx SINE Alu -19 293 1 245 241 58 23 chr3 149244882 149244969 -68792189 - MIR3 SINE MIR -12 196 107 2074 202 113 17 chr3 149247305 149247766 -68789392 + MLT1D LTR MaLR 1 505 0 2165 99 6 25 chr3 149248691 149249005 -68788153 + AluSx SINE Alu 5 312 0 221 372 47 23 chr3 149249364 149249493 -68787665 + L2 LINE L2 3136 3267 -5 243 103 0 0 chr3 149250762 149250801 -68786357 + (TG)n Simple_repeat Simple_repeat 2 40 0 4789 13 0 14 chr3 149251976 149252558 -68784600 - L1PA2 LINE L1 0 6155 5612 318 261 35 28 chr3 149252951 149253093 -68784065 + GA-rich Low_complexity Low_complexity 1 143 0 2241 149 11 3 chr3 149254162 149254524 -68782634 - MLT1A1 LTR MaLR 0 365 1 1578 176 31 0 chr3 149254711 149255000 -68782158 + AluJb SINE Alu 1 298 -14 788 234 71 0 chr3 149255538 149255735 -68781423 - LTR33A LTR ERVL -7 516 306 464 302 119 17 chr3 149255714 149255949 -68781209 + MLT1L LTR MaLR 345 603 -12 * 1220 99 21 21 chr3 149256737 149256928 -68780230 - AluSg/x SINE Alu 0 310 120 531 192 34 135 chr3 149257062 149257155 -68780003 - MIR SINE MIR -10 252 190 2001 152 37 65 chr3 149257155 149257556 -68779602 + MLT1B LTR MaLR 1 390 0 531 192 34 135 chr3 149257556 149257670 -68779488 - MIR SINE MIR -72 190 66 640 282 108 24 chr3 149258355 149258642 -68778516 - LTR16A1 LTR ERVL 0 457 147 559 213 81 7 chr3 149259366 149259502 -68777656 - MIR SINE MIR -68 194 49 32 0 0 0 chr3 149259766 149259798 -68777360 + AT_rich Low_complexity Low_complexity 1 32 0 2312 63 7 0 chr3 149260432 149260733 -68776425 + AluY SINE Alu 1 303 -8 292 121 61 0 chr3 149260734 149260800 -68776358 - L1MD2 LINE L1 -2 6357 6288 1265 68 40 0 chr3 149260825 149261001 -68776157 + L1PA13 LINE L1 5977 6159 -4 1740 124 4 0 chr3 149261377 149261626 -68775532 + AluSx SINE Alu 1 250 -62 20092 62 8 1 chr3 149261727 149265173 -68771985 + L1P2 LINE L1 2333 5791 -363 959 134 0 0 chr3 149265273 149265415 -68771743 - MLT2C1 LTR ERVL -255 142 1 689 253 7 0 chr3 149265417 149265571 -68771587 + HAL1 LINE L1 1597 1751 -756 664 249 126 52 chr3 149265571 149265968 -68771190 - LTR16A1 LTR ERVL 0 457 73 324 70 0 0 chr3 149265991 149266034 -68771124 + (TG)n Simple_repeat Simple_repeat 1 43 0 2038 245 68 43 chr3 149266071 149266810 -68770348 + HAL1 LINE L1 1750 2506 -1 599 178 0 0 chr3 149267098 149267188 -68769970 + FAM SINE Alu 82 171 -14 2382 209 83 24 chr3 149267856 149268407 -68768751 - MLT1E LTR MaLR 0 593 10 648 235 34 7 chr3 149268835 149268984 -68768174 + MIR SINE MIR 22 174 -88 241 297 40 10 chr3 149270322 149270423 -68766735 - MIR SINE MIR -7 255 152 214 143 0 0 chr3 149271477 149271512 -68765646 - MIR SINE MIR -104 158 124 238 208 169 13 chr3 149272226 149272303 -68764855 + HAL1 LINE L1 742 830 -1677 203 111 0 44 chr3 149272306 149272351 -68764807 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2691 247 84 43 chr3 149272386 149273449 -68763709 + HAL1 LINE L1 842 1947 -560 410 266 60 63 chr3 149273463 149273685 -68763473 + HAL1 LINE L1 2253 2475 -32 1928 160 3 0 chr3 149273685 149273973 -68763185 + AluJb SINE Alu 1 289 -23 410 266 60 63 chr3 149273973 149274002 -68763156 + HAL1 LINE L1 2475 2503 -4 311 175 32 16 chr3 149274008 149274071 -68763087 + MER116 DNA Mariner 17 80 0 2174 130 37 11 chr3 149274082 149274458 -68762700 + L1MA8 LINE L1 5847 6232 -59 23 0 0 0 chr3 149274464 149274487 -68762671 + AT_rich Low_complexity Low_complexity 1 23 0 7759 42 3 3 chr3 149274519 149275559 -68761599 - L1PA5 LINE L1 -11 6143 5103 229 307 10 30 chr3 149276004 149276105 -68761053 + MLT1K LTR MaLR 182 280 -308 263 176 15 59 chr3 149276347 149276415 -68760743 + MLT1K LTR MaLR 511 575 -13 532 319 77 59 chr3 149277504 149277946 -68759212 - L2 LINE L2 -10 3262 2813 766 248 133 47 chr3 149278503 149278677 -68758481 - L2 LINE L2 -703 2611 2453 1570 147 147 72 chr3 149278677 149279038 -68758120 - MLT1B LTR MaLR -2 388 1 766 248 133 47 chr3 149279038 149279246 -68757912 - L2 LINE L2 -861 2453 2196 891 168 0 0 chr3 149279460 149279591 -68757567 + FLAM_C SINE Alu 1 131 -2 23 0 0 0 chr3 149279626 149279649 -68757509 + AT_rich Low_complexity Low_complexity 1 23 0 429 298 155 24 chr3 149279959 149280227 -68756931 + LTR16C LTR ERVL 195 457 0 308 175 211 9 chr3 149280228 149280342 -68756816 - HAL1b LINE L1 -76 1272 1136 2322 83 0 3 chr3 149280372 149280661 -68756497 + AluSq SINE Alu 18 305 -8 514 226 0 0 chr3 149280726 149280819 -68756339 + MER96 DNA MER1_type? 1 93 -82 336 247 43 65 chr3 149280989 149281082 -68756076 + MIR SINE MIR 8 98 -110 229 354 0 0 chr3 149281287 149281352 -68755806 - L2 LINE L2 -8 3305 3241 771 335 133 49 chr3 149282072 149283174 -68753984 + L2 LINE L2 1671 2864 -450 760 264 108 8 chr3 149283318 149283576 -68753582 + L3 LINE CR1 1279 1562 -15 710 278 66 0 chr3 149283593 149283791 -68753367 - MIR SINE MIR -3 259 49 889 179 17 34 chr3 149283792 149283971 -68753187 + MER5A DNA MER1_type 8 183 -6 245 213 33 0 chr3 149284930 149284991 -68752167 - L1MC4 LINE L1 -1344 6698 6636 415 270 147 25 chr3 149285541 149285704 -68751454 - MIR SINE MIR -56 206 24 1553 224 85 3 chr3 149285845 149286211 -68750947 + MSTD LTR MaLR 1 396 0 234 301 0 0 chr3 149286366 149286439 -68750719 + L1ME4a LINE L1 5959 6031 -90 354 296 35 12 chr3 149286557 149286726 -68750432 + MER5B DNA MER1_type 1 173 -5 275 354 0 0 chr3 149287044 149287126 -68750032 - MIR SINE MIR -68 140 59 205 315 67 11 chr3 149287139 149287228 -68749930 - L2 LINE L2 -46 3226 3133 3402 154 39 34 chr3 149288295 149288906 -68748252 - MER90 LTR ERV1 0 614 1 819 243 24 15 chr3 149289979 149290204 -68746954 - MLT1K LTR MaLR -7 588 384 243 219 219 77 chr3 149290716 149290871 -68746287 + MIR SINE MIR 50 226 -36 6506 239 43 28 chr3 149291694 149291909 -68745249 - L1MDa LINE L1 -1933 4607 4397 2115 141 55 25 chr3 149291909 149292271 -68744887 + THE1C LTR MaLR 3 375 0 6506 239 43 28 chr3 149292271 149294034 -68743124 - L1MDa LINE L1 -2143 4397 2598 1456 199 59 0 chr3 149294045 149294317 -68742841 - MSTB LTR MaLR -138 288 1 582 85 0 0 chr3 149294317 149294399 -68742759 - L1M1 LINE L1 -4855 2710 2629 7349 113 6 7 chr3 149294423 149295631 -68741527 - L1MA1 LINE L1 0 6302 5097 1416 142 96 21 chr3 149295622 149295903 -68741255 - L1MDa LINE L1 -4358 2182 1881 * 1415 94 10 5 chr3 149295935 149295968 -68741190 - L1PA12 LINE L1 -118 6050 6018 280 259 29 93 chr3 149295968 149296139 -68741019 - L1MB3 LINE L1 -174 6009 5852 638 144 32 32 chr3 149296139 149296264 -68740894 - L1PB3 LINE L1 -1 6153 6029 280 259 29 93 chr3 149296264 149296297 -68740861 - L1MB3 LINE L1 -331 5852 5818 1327 280 148 68 chr3 149296303 149296794 -68740364 + L2 LINE L2 1289 1739 -1575 2553 63 0 0 chr3 149296794 149297095 -68740063 + AluY SINE Alu 1 301 -10 1327 280 148 68 chr3 149297095 149297875 -68739283 + L2 LINE L2 1739 2662 -652 22 0 0 0 chr3 149298011 149298033 -68739125 + AT_rich Low_complexity Low_complexity 1 22 0 371 323 62 23 chr3 149298242 149298499 -68738659 - L1MB3 LINE L1 -542 5817 5551 247 208 0 0 chr3 149298500 149298553 -68738605 + T-rich Low_complexity Low_complexity 1 53 0 11524 15 0 0 chr3 149298559 149300629 -68736529 - L1HS LINE L1 0 6155 4086 245 303 40 10 chr3 149300638 149300737 -68736421 - L1MB3 LINE L1 -2262 5546 5445 376 308 20 55 chr3 149300940 149301086 -68736072 + L2 LINE L2 2927 3067 -246 440 236 6 87 chr3 149301194 149301355 -68735803 - MLT2F LTR ERVL -515 148 1 573 333 62 0 chr3 149301394 149301586 -68735572 - MIR SINE MIR -13 249 46 336 281 15 98 chr3 149301849 149301915 -68735243 - MER5A DNA MER1_type -1 188 118 597 171 14 116 chr3 149301915 149302061 -68735097 + FLAM_A SINE Alu 1 131 -2 336 281 15 98 chr3 149302061 149302184 -68734974 - MER5A DNA MER1_type -71 118 2 427 269 119 72 chr3 149302403 149302831 -68734327 - LTR33A LTR ERVL -73 450 3 621 285 78 16 chr3 149303051 149303293 -68733865 + Charlie8 DNA MER1_type 1 257 -2160 22 80 0 0 chr3 149303367 149303417 -68733741 + AT_rich Low_complexity Low_complexity 1 50 0 183 100 0 0 chr3 149303487 149303517 -68733641 + (ATG)n Simple_repeat Simple_repeat 3 32 0 4794 127 26 42 chr3 149304765 149305574 -68731584 + L1PA15 LINE L1 5369 6164 -1 2221 107 0 0 chr3 149305589 149305878 -68731280 + AluSx SINE Alu 5 293 -19 335 287 13 45 chr3 149305893 149306050 -68731108 - HAL1 LINE L1 -1 2742 2591 471 103 0 0 chr3 149306068 149306136 -68731022 - MER41A LTR ERV1 -87 467 400 724 250 81 32 chr3 149306138 149306482 -68730676 - HAL1 LINE L1 -139 2604 2244 1972 182 26 19 chr3 149306485 149306864 -68730294 + MLT1B LTR MaLR 1 382 -8 272 339 63 16 chr3 149306990 149307117 -68730041 - MER91A DNA MER1_type 0 196 64 1053 273 42 59 chr3 149307210 149307550 -68729608 - L1M4c LINE L1 -689 2054 1514 332 298 72 58 chr3 149308000 149308292 -68728866 - L2 LINE L2 -4 3309 3014 567 110 73 0 chr3 149308311 149308393 -68728765 + FLAM_C SINE Alu 30 117 -26 246 62 0 0 chr3 149308399 149308431 -68728727 + (CA)n Simple_repeat Simple_repeat 1 32 0 248 314 271 23 chr3 149308474 149308824 -68728334 - L2 LINE L2 -339 2975 2539 229 296 111 37 chr3 149309524 149309659 -68727499 - L2 LINE L2 -180 3092 2948 219 69 0 0 chr3 149311660 149311689 -68725469 + (GA)n Simple_repeat Simple_repeat 2 30 0 204 222 0 0 chr3 149312420 149312456 -68724702 + polypyrimidine Low_complexity Low_complexity 1 36 0 457 274 63 59 chr3 149312497 149312826 -68724332 - L1ME3A LINE L1 -238 5932 5673 935 189 66 12 chr3 149312870 149313113 -68724045 + MER33 DNA MER1_type 47 302 -22 398 334 39 21 chr3 149314247 149314432 -68722726 + MIR SINE MIR 4 186 -62 1870 134 41 3 chr3 149314830 149315122 -68722036 + AluJo SINE Alu 1 303 -9 23 0 0 0 chr3 149315348 149315371 -68721787 + AT_rich Low_complexity Low_complexity 1 23 0 438 260 73 18 chr3 149315445 149315664 -68721494 + MER106A DNA MER1_type 1 231 -5 6431 106 19 50 chr3 149316292 149317254 -68719904 + Tigger3b DNA MER2_type 1 925 -2103 1894 87 4 34 chr3 149317254 149317518 -68719640 + AluSq SINE Alu 21 276 -37 6431 106 19 50 chr3 149317518 149317686 -68719472 + Tigger3b DNA MER2_type 925 1097 -134 1392 189 16 28 chr3 149318454 149318776 -68718382 - MER39 LTR ERV1 -1 706 389 366 259 103 9 chr3 149318813 149318929 -68718229 - MER39 LTR ERV1 -568 139 13 1185 177 57 4 chr3 149319188 149319436 -68717722 - L1ME LINE L1 -559 5605 5345 447 281 150 30 chr3 149319442 149320140 -68717018 - L1M4 LINE L1 -2304 3842 3061 787 170 159 140 chr3 149320181 149320539 -68716619 + MLT1A1 LTR MaLR 1 365 0 258 296 28 49 chr3 149320539 149320786 -68716372 - L1M4 LINE L1 -3126 3020 2779 23 33 0 0 chr3 149322441 149322471 -68714687 + AT_rich Low_complexity Low_complexity 1 30 0 4327 109 53 3 chr3 149322498 149323178 -68713980 - L1PB4 LINE L1 -9 6147 5434 1319 125 5 42 chr3 149323182 149323398 -68713760 - AluSg/x SINE Alu -8 304 97 919 194 5 0 chr3 149323398 149323589 -68713569 + L1 LINE L1 4010 4201 -1945 4893 211 28 21 chr3 149323589 149324916 -68712242 - L1PA15-16 LINE L1 -2619 4230 2890 2304 104 0 9 chr3 149324916 149325232 -68711926 - AluSq SINE Alu 0 313 1 4893 211 28 21 chr3 149325232 149325375 -68711783 - L1PA15-16 LINE L1 -3959 2890 2750 1978 234 38 115 chr3 149325366 149325690 -68711468 - L1PA15-16 LINE L1 -4513 2336 1989 * 2180 90 38 0 chr3 149325690 149325980 -68711178 - AluY SINE Alu -10 301 1 1978 234 38 115 chr3 149325980 149326813 -68710345 - L1PA15-16 LINE L1 -4860 1989 1268 1815 169 30 0 chr3 149326905 149327201 -68709957 - AluJb SINE Alu -7 305 1 1361 162 64 72 chr3 149327432 149327821 -68709337 - MLT1B LTR MaLR -4 386 1 219 312 237 0 chr3 149327835 149327928 -68709230 + L2 LINE L2 3147 3261 -11 1033 305 32 10 chr3 149328016 149328416 -68708742 + MLT1I LTR MaLR 1 409 0 562 284 108 21 chr3 149328986 149329180 -68707978 + MIR SINE MIR 20 230 -32 576 294 34 87 chr3 149329569 149330042 -68707116 - MLT1K LTR MaLR 0 588 141 2432 44 40 0 chr3 149330871 149331167 -68705991 - AluY SINE Alu -3 308 1 180 0 0 0 chr3 149332019 149332039 -68705119 + (A)n Simple_repeat Simple_repeat 1 20 0 183 244 244 12 chr3 149332410 149332496 -68704662 + MIR SINE MIR 129 234 -28 492 243 0 0 chr3 149332537 149332644 -68704514 + MIR SINE MIR 66 172 -90 727 209 118 36 chr3 149332810 149333030 -68704128 - MIR SINE MIR -24 238 1 1513 198 3 58 chr3 149333957 149334270 -68702888 - AluJo SINE Alu -16 296 1 224 306 71 20 chr3 149334284 149334382 -68702776 - L2 LINE L2 -19 3253 3151 398 270 118 65 chr3 149334811 149335167 -68701991 - L2 LINE L2 -30 3242 2868 186 43 0 0 chr3 149335791 149335814 -68701344 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 30 27 0 0 chr3 149336789 149336826 -68700332 + AT_rich Low_complexity Low_complexity 1 37 0 579 207 64 45 chr3 149336941 149337207 -68699951 - L1MC5 LINE L1 -49 7912 7642 1920 264 40 20 chr3 149337262 149337906 -68699252 - MER20B DNA MER1_type -30 753 97 499 249 36 36 chr3 149337906 149338099 -68699059 + L1MC4 LINE L1 7599 7791 -251 394 255 145 25 chr3 149339786 149339986 -68697172 + Charlie2 DNA MER1_type 4 227 -2635 2189 101 3 43 chr3 149339986 149340312 -68696846 + AluSq SINE Alu 1 313 0 236 301 24 0 chr3 149340588 149340671 -68696487 + HsTC2 DNA Tc2 51 135 -1763 * 1137 192 63 17 chr3 149340669 149340956 -68696202 + HsTC2 DNA Tc2 1260 1735 -163 183 205 0 0 chr3 149342762 149342801 -68694357 + T-rich Low_complexity Low_complexity 1 39 0 1826 137 35 11 chr3 149342931 149343215 -68693943 + AluJb SINE Alu 4 294 -18 340 292 128 41 chr3 149343263 149343506 -68693652 - L1ME3A LINE L1 -117 6439 6176 3407 273 88 35 chr3 149343506 149344838 -68692320 - HAL1 LINE L1 -536 1971 488 21241 31 1 3 chr3 149344838 149348190 -68688968 + L1PA4 LINE L1 2791 6155 0 3407 273 88 35 chr3 149348190 149348703 -68688455 - HAL1 LINE L1 -2019 488 4 370 273 77 5 chr3 149348911 149349105 -68688053 - L1ME3A LINE L1 -1318 5222 5015 427 256 88 66 chr3 149349127 149349421 -68687737 - L1ME3A LINE L1 -1572 4968 4659 1657 167 66 21 chr3 149349421 149349709 -68687449 - AluJo SINE Alu -11 301 1 427 256 88 66 chr3 149349709 149349871 -68687287 - L1ME3A LINE L1 -1881 4659 4502 1461 181 0 13 chr3 149349972 149350210 -68686948 - AluJo SINE Alu -75 237 3 478 323 69 18 chr3 149350235 149350625 -68686533 + L1ME LINE L1 5378 5787 -334 393 298 110 18 chr3 149351319 149351547 -68685611 - MLT1L LTR MaLR -8 607 359 247 343 7 34 chr3 149351648 149351794 -68685364 - MLT1L LTR MaLR -363 252 111 345 326 78 54 chr3 149352145 149352387 -68684771 - L1ME3A LINE L1 -6205 335 88 2148 143 48 81 chr3 149353407 149353888 -68683270 + MLT1C LTR MaLR 3 467 0 625 261 81 39 chr3 149353960 149354220 -68682938 + HAL1 LINE L1 1 271 -2236 1602 278 59 45 chr3 149354222 149354471 -68682687 + HAL1 LINE L1 635 879 -1628 2178 149 54 54 chr3 149354471 149354826 -68682332 + MSTC LTR MaLR 1 358 -70 2118 122 21 0 chr3 149354826 149355114 -68682044 - AluSx SINE Alu -18 294 1 2178 149 54 54 chr3 149355114 149355186 -68681972 + MSTC LTR MaLR 357 428 0 1602 278 59 45 chr3 149355186 149355306 -68681852 + HAL1 LINE L1 879 996 -1511 1953 173 0 0 chr3 149355306 149355607 -68681551 + AluJo SINE Alu 12 312 0 1602 278 59 45 chr3 149355607 149356119 -68681039 + HAL1 LINE L1 996 1529 -978 252 91 116 0 chr3 149356177 149356230 -68680928 - MLT2C1 LTR ERVL 0 397 352 443 229 167 42 chr3 149356231 149356423 -68680735 - MER2 DNA MER2_type 0 345 130 1281 149 45 0 chr3 149356423 149356644 -68680514 - MER7A DNA MER2_type 0 337 107 1274 109 0 0 chr3 149356644 149356809 -68680349 - AluSq SINE Alu -18 295 131 313 183 169 0 chr3 149356825 149356896 -68680262 - MER7A DNA MER2_type -237 109 29 417 325 73 18 chr3 149356996 149357582 -68679576 - L1M4 LINE L1 -2058 4088 3478 333 0 0 0 chr3 149359270 149359307 -68677851 + (TG)n Simple_repeat Simple_repeat 1 37 0 960 184 35 11 chr3 149360531 149360705 -68676453 - MER45A DNA AcHobo 0 178 1 771 281 209 56 chr3 149360872 149361431 -68675727 + L2 LINE L2 2364 3085 -228 2071 134 0 0 chr3 149361431 149361741 -68675417 - AluSp SINE Alu 0 310 1 771 281 209 56 chr3 149361741 149361960 -68675198 + L2 LINE L2 3085 3269 -44 466 281 270 3 chr3 149362102 149362461 -68674697 - L2 LINE L2 -31 3282 2828 205 379 35 0 chr3 149362614 149362701 -68674457 + MIR SINE MIR 21 110 -152 2371 137 60 2 chr3 149363085 149363486 -68673672 + MSTC LTR MaLR 5 428 0 708 256 30 47 chr3 149363527 149363761 -68673397 + MIR SINE MIR 3 232 -30 259 321 68 9 chr3 149363751 149363883 -68673275 - MIR SINE MIR -67 141 19 * 28 71 0 0 chr3 149363958 149364014 -68673144 + AT_rich Low_complexity Low_complexity 1 56 0 373 277 182 24 chr3 149364852 149365105 -68672053 + MLT1K LTR MaLR 1 293 -295 717 278 109 16 chr3 149365106 149365663 -68671495 - L1M4 LINE L1 -1300 4846 4238 546 167 77 55 chr3 149365663 149365892 -68671266 - MER106B DNA MER1_type 0 1059 1 685 264 93 49 chr3 149365972 149366571 -68670587 - L1MEd LINE L1 -4748 1562 891 1120 101 0 0 chr3 149366599 149366747 -68670411 - AluSg/x SINE Alu -7 305 158 441 279 57 21 chr3 149366761 149367044 -68670114 - L1MEd LINE L1 -5266 853 561 2412 76 7 3 chr3 149367220 149367521 -68669637 - AluY SINE Alu -9 302 1 302 276 24 8 chr3 149367552 149367679 -68669479 - L1MEd LINE L1 -5979 140 12 827 252 98 31 chr3 149368332 149368721 -68668437 - L1M4 LINE L1 -951 5195 4781 333 194 0 0 chr3 149368703 149368775 -68668383 + L1ME2 LINE L1 6084 6155 -9 * 329 317 33 101 chr3 149368897 149369203 -68667955 - L2 LINE L2 -3 3269 2985 25 0 0 0 chr3 149369350 149369375 -68667783 + AT_rich Low_complexity Low_complexity 1 25 0 484 248 128 51 chr3 149369648 149369882 -68667276 - MIR SINE MIR 0 262 11 186 167 0 0 chr3 149370367 149370403 -68666755 + (TA)n Simple_repeat Simple_repeat 1 36 0 450 289 179 28 chr3 149370941 149371471 -68665687 - MLT1L LTR MaLR -4 611 2 2009 145 117 29 chr3 149371743 149372163 -68664995 + MSTB2 LTR MaLR 1 457 0 323 154 16 16 chr3 149373326 149373407 -68663751 + MLT1I LTR MaLR 325 448 -2 2376 109 0 0 chr3 149373857 149374169 -68662989 - AluSx SINE Alu 0 312 1 441 291 70 43 chr3 149376419 149376609 -68660549 - L3 LINE CR1 -161 1416 1218 696 198 178 0 chr3 149376609 149376766 -68660392 + MER5A DNA MER1_type 1 185 -4 441 291 70 43 chr3 149376766 149376805 -68660353 - L3 LINE CR1 -359 1218 1181 416 264 44 0 chr3 149377033 149377188 -68659970 + MLT1L LTR MaLR 89 264 -324 1090 252 33 74 chr3 149377268 149377725 -68659433 - MLT1H LTR MaLR -99 450 13 1873 230 71 64 chr3 149377759 149378671 -68658487 - HAL1b LINE L1 0 1348 430 349 257 26 0 chr3 149378697 149378810 -68658348 - HAL1b LINE L1 -701 647 532 1078 90 0 0 chr3 149378973 149379128 -68658030 - AluSg/x SINE Alu 0 310 156 870 153 10 13 chr3 149379632 149379853 -68657305 + CT-rich Low_complexity Low_complexity 1 220 0 282 27 27 0 chr3 149379853 149379890 -68657268 + (TTTTC)n Simple_repeat Simple_repeat 1 38 0 807 147 17 6 chr3 149379890 149380067 -68657091 + CT-rich Low_complexity Low_complexity 2 180 0 330 67 0 0 chr3 149380091 149380136 -68657022 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 7189 26 0 0 chr3 149380136 149381743 -68655415 - L1PA3 LINE L1 -31 6124 4518 2090 128 13 3 chr3 149381745 149382049 -68655109 - AluSg SINE Alu -1 309 3 412 263 0 44 chr3 149383175 149383289 -68653869 - MIR SINE MIR -122 140 32 282 261 81 0 chr3 149383582 149383693 -68653465 - MLT1H LTR MaLR 0 549 430 331 213 154 37 chr3 149383836 149383972 -68653186 - MLT1H LTR MaLR -375 174 23 274 411 0 0 chr3 149384237 149384366 -68652792 + L2 LINE L2 3183 3311 -2 383 336 20 0 chr3 149385291 149385440 -68651718 - L2 LINE L2 -678 2636 2485 1539 116 31 8 chr3 149385511 149385770 -68651388 + L1PA13 LINE L1 5899 6163 0 313 251 48 72 chr3 149385905 149386072 -68651086 + HAL1b LINE L1 1178 1340 -8 813 219 54 15 chr3 149386952 149387157 -68650001 + MIR SINE MIR 47 259 -3 341 303 123 0 chr3 149387399 149387521 -68649637 - L2 LINE L2 0 3272 3136 432 243 0 21 chr3 149387601 149387745 -68649413 - L1ME LINE L1 -352 5810 5670 225 258 135 11 chr3 149387794 149387883 -68649275 + MER97b DNA MER1_type? 10 109 -944 1208 255 31 24 chr3 149387914 149388330 -68648828 + MER97c DNA MER1_type? 191 609 -481 2396 76 0 3 chr3 149388362 149388666 -68648492 + AluY SINE Alu 1 303 -8 21 0 0 0 chr3 149388801 149388822 -68648336 + AT_rich Low_complexity Low_complexity 1 21 0 1640 199 3 7 chr3 149389033 149389325 -68647833 + AluJb SINE Alu 3 293 -19 219 69 0 0 chr3 149389384 149389413 -68647745 + (T)n Simple_repeat Simple_repeat 1 29 0 440 237 68 51 chr3 149389544 149389780 -68647378 + MER97b DNA MER1_type? 848 1050 -3 311 240 58 41 chr3 149389788 149389909 -68647249 - L1MEc LINE L1 -2751 3464 3342 618 234 151 17 chr3 149390089 149390388 -68646770 - L1MEc LINE L1 -3173 3042 2704 962 164 76 160 chr3 149390395 149390793 -68646365 - MLT1A1 LTR MaLR -4 392 1 746 271 46 22 chr3 149390793 149390909 -68646249 - L1MEc LINE L1 -3522 2693 2581 2412 66 3 10 chr3 149390909 149391210 -68645948 - AluY SINE Alu -12 299 1 746 271 46 22 chr3 149391210 149391506 -68645652 - L1MEc LINE L1 -3634 2581 2271 432 276 86 20 chr3 149391964 149392265 -68644893 - L1MEc LINE L1 -4641 1755 1435 837 172 0 8 chr3 149392290 149392424 -68644734 + FLAM_C SINE Alu 1 133 -10 289 314 19 0 chr3 149392430 149392586 -68644572 - L1MEc LINE L1 -4979 1417 1259 252 339 21 42 chr3 149392774 149393013 -68644145 - L1MEc LINE L1 -5308 897 664 887 279 39 4 chr3 149393329 149393609 -68643549 + LTR16A1 LTR ERVL 168 457 0 1135 275 33 31 chr3 149393939 149394070 -68643088 + MLT1J2 LTR MaLR 58 187 -263 1956 174 70 24 chr3 149394070 149394483 -68642675 + MSTB1 LTR MaLR 1 432 0 1135 275 33 31 chr3 149394483 149394740 -68642418 + MLT1J2 LTR MaLR 187 447 -3 412 247 41 0 chr3 149394827 149394924 -68642234 - L2 LINE L2 -18 3295 3195 214 204 19 0 chr3 149395207 149395261 -68641897 + T-rich Low_complexity Low_complexity 3 57 0 23 0 0 0 chr3 149395296 149395319 -68641839 + AT_rich Low_complexity Low_complexity 1 23 0 5555 142 35 3 chr3 149395323 149396317 -68640841 - L1MC1 LINE L1 -2 6331 5306 28 29 0 0 chr3 149396735 149396770 -68640388 + AT_rich Low_complexity Low_complexity 1 35 0 230 301 36 0 chr3 149396815 149396898 -68640260 + MIR SINE MIR 59 144 -64 1908 156 10 0 chr3 149397185 149397473 -68639685 + AluSx SINE Alu 1 291 -21 245 197 16 0 chr3 149398087 149398148 -68639010 + GA-rich Low_complexity Low_complexity 1 62 0 29 84 0 0 chr3 149399815 149399886 -68637272 + AT_rich Low_complexity Low_complexity 1 71 0 806 229 246 69 chr3 149399900 149400795 -68636363 - HAL1 LINE L1 -132 2375 1323 428 306 135 16 chr3 149400847 149401040 -68636118 - HAL1 LINE L1 -1287 1220 1005 989 132 0 7 chr3 149401083 149401235 -68635923 - L1PB4 LINE L1 -12 6144 5994 1026 281 68 58 chr3 149401368 149402183 -68634975 - HAL1 LINE L1 -1684 823 1 240 307 144 13 chr3 149403463 149403628 -68633530 + MIR3 SINE MIR 8 188 -60 433 336 134 18 chr3 149404291 149404672 -68632486 - L2 LINE L2 -616 2698 2274 319 207 12 37 chr3 149404684 149404766 -68632392 + L2 LINE L2 2590 2669 -645 462 324 65 23 chr3 149406125 149406341 -68630817 + MIR SINE MIR 20 244 -18 206 312 87 51 chr3 149406651 149406789 -68630369 - MIR3 SINE MIR -63 145 3 1605 228 140 35 chr3 149407561 149408018 -68629140 - MLT1D LTR MaLR 0 505 1 1533 213 7 102 chr3 149408021 149408472 -68628686 - MLT1D-int LTR MaLR -3 1368 961 518 263 108 11 chr3 149408658 149408844 -68628314 + MER3 DNA MER1_type 1 204 -5 252 317 118 21 chr3 149408875 149409061 -68628097 - L2 LINE L2 -172 3100 2897 2555 50 0 0 chr3 149409154 149409453 -68627705 + AluY SINE Alu 1 299 -12 7525 45 7 23 chr3 149409642 149411131 -68626027 - SVA Other Other -875 1386 1 3246 201 11 81 chr3 149411241 149412179 -68624979 - MLT1D-int LTR MaLR -491 880 9 945 138 171 0 chr3 149412179 149412360 -68624798 - MLT1D LTR MaLR 0 505 294 380 307 58 34 chr3 149412566 149412771 -68624387 - L1ME LINE L1 -531 5590 5381 511 259 48 0 chr3 149412861 149413067 -68624091 + MLT1J2 LTR MaLR 3 185 -265 198 0 0 0 chr3 149413346 149413368 -68623790 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 690 277 70 92 chr3 149414736 149415420 -68621738 + L2 LINE L2 2597 3272 0 376 289 101 19 chr3 149416011 149416170 -68620988 - MER5B DNA MER1_type -2 176 5 195 316 101 22 chr3 149416580 149416719 -68620439 - L2 LINE L2 0 3272 3123 887 213 44 51 chr3 149416720 149416987 -68620171 + MIR SINE MIR 7 262 0 2163 120 7 0 chr3 149419732 149420032 -68617126 - AluSc SINE Alu -7 302 1 2338 96 10 0 chr3 149420709 149421001 -68616157 - AluSc SINE Alu -14 295 1 866 132 0 15 chr3 149421045 149421181 -68615977 - AluSp/q SINE Alu -2 311 178 209 367 108 0 chr3 149421407 149421527 -68615631 + L2 LINE L2 3138 3270 -2 38785 87 10 9 chr3 149422804 149428956 -68608202 + L1PA6 LINE L1 1 6153 -1 607 270 58 31 chr3 149430354 149430580 -68606578 - MIR SINE MIR 0 262 31 944 219 32 21 chr3 149430759 149430946 -68606212 + MER5A DNA MER1_type 1 189 0 640 279 25 0 chr3 149431586 149431744 -68605414 - MLT1G1 LTR MaLR -3 592 431 772 250 9 56 chr3 149431844 149432076 -68605082 - L1MC4a LINE L1 -1932 5876 5656 483 265 68 68 chr3 149432091 149432731 -68604427 - L1MEd LINE L1 -815 1675 1002 549 296 122 38 chr3 149434350 149434563 -68602595 + MIR SINE MIR 5 235 -27 25 31 0 0 chr3 149434727 149434759 -68602399 + AT_rich Low_complexity Low_complexity 1 32 0 751 263 8 19 chr3 149435927 149436153 -68601005 - MIR SINE MIR 0 262 40 216 304 143 0 chr3 149438314 149438426 -68598732 + L2 LINE L2 3184 3311 -2 2010 169 45 14 chr3 149439250 149439604 -68597554 - MLT1A1 LTR MaLR 0 365 1 1652 231 91 17 chr3 149439908 149440372 -68596786 + MLT1H LTR MaLR 52 549 0 287 294 110 9 chr3 149440539 149440648 -68596510 + L2 LINE L2 3151 3270 -2 612 295 44 26 chr3 149440939 149441166 -68595992 - MIR SINE MIR -4 258 28 210 341 29 98 chr3 149441550 149441796 -68595362 - L2 LINE L2 -86 3186 2958 839 188 0 0 chr3 149441829 149441962 -68595196 + FLAM_A SINE Alu 1 133 0 1918 164 3 3 chr3 149442374 149442684 -68594474 + AluJo SINE Alu 2 311 -1 22 35 0 0 chr3 149442739 149442768 -68594390 + AT_rich Low_complexity Low_complexity 1 29 0 1602 205 103 30 chr3 149442886 149443321 -68593837 + MLT1C LTR MaLR 1 467 0 24 32 0 0 chr3 149443916 149443947 -68593211 + AT_rich Low_complexity Low_complexity 1 31 0 585 29 0 0 chr3 149444580 149444648 -68592510 - L1PA8 LINE L1 -8 6164 6097 2848 109 3 3 chr3 149444941 149445316 -68591842 + THE1C LTR MaLR 1 375 0 10544 110 45 38 chr3 149445316 149446885 -68590273 + THE1C-int LTR MaLR 1 1580 0 2690 117 11 16 chr3 149446885 149447262 -68589896 + THE1C LTR MaLR 1 375 0 311 305 53 0 chr3 149450113 149450208 -68586950 + MIR3 SINE MIR 81 180 -28 180 0 0 0 chr3 149452371 149452391 -68584767 + (A)n Simple_repeat Simple_repeat 1 20 0 514 259 163 0 chr3 149452539 149452705 -68584453 - MIR SINE MIR 0 262 70 222 261 193 17 chr3 149453212 149453331 -68583827 - L2 LINE L2 -5 3308 3169 376 360 20 30 chr3 149453860 149454060 -68583098 + MIR3 SINE MIR 4 201 -7 188 231 0 77 chr3 149454859 149454924 -68582234 + L3 LINE CR1 1325 1384 -193 812 283 130 7 chr3 149455029 149455566 -68581592 - L1MC4 LINE L1 0 8042 7440 26 0 0 0 chr3 149455715 149455741 -68581417 + AT_rich Low_complexity Low_complexity 1 26 0 416 270 27 18 chr3 149455743 149455854 -68581304 + L3 LINE CR1 1413 1524 -53 294 339 107 34 chr3 149457155 149457332 -68579826 - L2 LINE L2 -20 3252 3063 1012 202 0 0 chr3 149457372 149457540 -68579618 + FAM SINE Alu 1 168 -7 1247 237 50 39 chr3 149457726 149458103 -68579055 - MLT1G3 LTR MaLR -182 413 1 1215 128 22 0 chr3 149458344 149458524 -68578634 + L1PA10 LINE L1 5975 6158 -10 501 71 0 0 chr3 149458723 149458793 -68578365 + (CA)n Simple_repeat Simple_repeat 2 71 0 417 328 63 10 chr3 149459149 149459359 -68577799 - MIR SINE MIR -8 254 33 465 217 17 17 chr3 149459660 149459775 -68577383 + MER117 DNA MER1_type 52 166 -31 37 62 0 0 chr3 149459805 149459870 -68577288 + AT_rich Low_complexity Low_complexity 1 65 0 2286 99 0 0 chr3 149459871 149460209 -68576949 + AluSx SINE Alu 1 338 0 2252 87 0 7 chr3 149461802 149462089 -68575069 - AluSx SINE Alu -21 291 7 378 42 0 0 chr3 149462137 149462185 -68574973 + (TG)n Simple_repeat Simple_repeat 2 49 0 1772 193 59 70 chr3 149462194 149462665 -68574493 - MLT1C LTR MaLR 0 467 2 448 222 71 0 chr3 149462803 149462902 -68574256 + MER5A DNA MER1_type 4 109 -80 218 264 0 0 chr3 149463158 149463211 -68573947 - L2 LINE L2 0 3272 3220 330 320 158 36 chr3 149463690 149463943 -68573215 + L2 LINE L2 3030 3313 0 1713 192 0 10 chr3 149464208 149464510 -68572648 - AluJo SINE Alu -13 299 1 186 235 147 15 chr3 149466399 149466467 -68570691 - MIR SINE MIR -114 148 72 * 208 377 33 25 chr3 149466456 149466578 -68570580 - L2 LINE L2 0 3272 3150 290 311 52 15 chr3 149466606 149466741 -68570417 + MER5B DNA MER1_type 16 155 -23 294 300 10 20 chr3 149467405 149467505 -68569653 + MIR SINE MIR 164 262 0 972 220 84 0 chr3 149468503 149468694 -68568464 + MER63A DNA MER1_type 1 207 -3 231 353 29 0 chr3 149469625 149469693 -68567465 - MIR SINE MIR -187 75 6 2977 198 58 33 chr3 149470336 149471265 -68565893 - L1ME1 LINE L1 -86 6080 5139 248 335 54 60 chr3 149471475 149471642 -68565516 + MLT1F-int LTR MaLR 961 1126 -245 1074 236 129 49 chr3 149471658 149472023 -68565135 + MLT1F LTR MaLR 2 395 -147 1154 219 5 0 chr3 149472895 149473105 -68564053 - L1ME LINE L1 -469 5697 5487 564 272 141 23 chr3 149473356 149473661 -68563497 - LTR16B LTR ERVL -17 447 107 1094 280 84 3 chr3 149473819 149474165 -68562993 + LTR16C LTR ERVL 118 491 0 2831 171 10 11 chr3 149474567 149475087 -68562071 - L1MA6 LINE L1 -451 5840 5322 2349 156 39 21 chr3 149475087 149475518 -68561640 + L1MA6 LINE L1 5861 6299 -1 433 285 33 7 chr3 149475518 149475669 -68561489 - MER103 DNA DNA -11 155 1 272 314 107 14 chr3 149475812 149475952 -68561206 - L2 LINE L2 -179 3093 2941 1682 204 69 36 chr3 149476289 149476651 -68560507 + MLT1A2 LTR MaLR 1 374 0 316 318 93 13 chr3 149476688 149476839 -68560319 + MLT1K LTR MaLR 14 176 -412 1681 191 7 3 chr3 149477176 149477479 -68559679 - AluJo SINE Alu -8 304 1 917 161 0 0 chr3 149478477 149478620 -68558538 + MER7A DNA MER2_type 1 141 -205 2369 158 0 3 chr3 149478925 149479274 -68557884 + MER7A DNA MER2_type 1 346 0 21 0 0 0 chr3 149479483 149479504 -68557654 + AT_rich Low_complexity Low_complexity 1 21 0 425 276 73 0 chr3 149479977 149480100 -68557058 + L2 LINE L2 3141 3272 0 433 293 0 0 chr3 149480149 149480265 -68556893 + L1ME2 LINE L1 6036 6151 -13 411 253 22 55 chr3 149480346 149480528 -68556630 + L1MC4 LINE L1 7866 8041 -1 730 286 150 29 chr3 149481636 149482078 -68555080 - MLT1K LTR MaLR 0 615 102 242 329 35 0 chr3 149482852 149482937 -68554221 + MIR SINE MIR 25 112 -150 245 182 30 30 chr3 149483108 149483174 -68553984 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 21 57 0 0 chr3 149483221 149483256 -68553902 + AT_rich Low_complexity Low_complexity 1 35 0 2950 168 33 22 chr3 149485143 149485681 -68551477 - L1MA6 LINE L1 0 6300 5769 258 32 0 0 chr3 149485681 149485712 -68551446 + (GA)n Simple_repeat Simple_repeat 2 32 0 2950 168 33 22 chr3 149485712 149485726 -68551432 - L1MA6 LINE L1 -531 5769 5757 198 0 0 0 chr3 149485726 149485748 -68551410 + (CA)n Simple_repeat Simple_repeat 2 23 0 2950 168 33 22 chr3 149485748 149485924 -68551234 - L1MA6 LINE L1 -543 5757 5528 1515 296 56 39 chr3 149486120 149486742 -68550416 - L1M2c LINE L1 -6154 635 3 1122 328 11 29 chr3 149487114 149487568 -68549590 + L1M3a LINE L1 2 447 -5508 227 343 48 0 chr3 149487761 149487866 -68549292 + L1M3a LINE L1 345 454 -5501 2575 247 42 49 chr3 149487929 149488795 -68548363 + L1MA6 LINE L1 556 1422 -4106 7464 31 0 0 chr3 149488806 149490395 -68546763 + L1PA3 LINE L1 4533 6121 -34 501 46 0 0 chr3 149490395 149490460 -68546698 + L1HS LINE L1 6086 6150 -5 3298 39 11 3 chr3 149490531 149490913 -68546245 + L1PA4 LINE L1 5770 6154 -1 1207 234 29 7 chr3 149490914 149491222 -68545936 + L1MA6 LINE L1 1436 1750 -4578 * 6778 163 27 9 chr3 149491203 149492385 -68544773 + L1MA6 LINE L1 4297 5512 -970 240 35 0 0 chr3 149492385 149492414 -68544744 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 6778 163 27 9 chr3 149492414 149492915 -68544243 + L1MA6 LINE L1 5512 6002 -480 1822 114 0 0 chr3 149492915 149493167 -68543991 + L1MA6 LINE L1 6227 6480 -2 1122 256 81 16 chr3 149493390 149493711 -68543447 - MLT1I LTR MaLR -41 368 27 224 169 470 0 chr3 149493791 149493874 -68543284 + MIR SINE MIR 71 192 -70 269 310 11 0 chr3 149493911 149493998 -68543160 - L1ME4a LINE L1 -194 5927 5840 21 82 0 0 chr3 149494582 149494631 -68542527 + AT_rich Low_complexity Low_complexity 1 49 0 225 224 0 0 chr3 149494711 149494769 -68542389 + (TTCA)n Simple_repeat Simple_repeat 1 58 0 312 296 82 66 chr3 149494817 149495013 -68542145 - L2 LINE L2 -82 3190 2992 341 272 63 47 chr3 149495486 149495677 -68541481 + MIR SINE MIR 47 240 -22 195 347 14 24 chr3 149495897 149496033 -68541125 - MIR SINE MIR -50 212 25 495 266 177 15 chr3 149496329 149496532 -68540626 + MIR SINE MIR 27 262 0 2028 143 35 13 chr3 149496571 149496942 -68540216 + MLT1A1 LTR MaLR 1 363 -2 843 279 47 0 chr3 149497254 149497469 -68539689 + MIR SINE MIR 34 258 -4 248 68 0 23 chr3 149497950 149497994 -68539164 + (TTTTA)n Simple_repeat Simple_repeat 3 45 0 539 298 25 22 chr3 149498434 149498486 -68538672 + L1ME4a LINE L1 5633 5683 -438 5173 163 35 2 chr3 149498486 149499322 -68537836 + MER6 DNA MER2_type 3 865 0 539 298 25 22 chr3 149499322 149499544 -68537614 + L1ME4a LINE L1 5683 5908 -213 24 32 0 0 chr3 149499718 149499749 -68537409 + AT_rich Low_complexity Low_complexity 1 31 0 434 234 66 29 chr3 149499799 149499936 -68537222 + L1ME4a LINE L1 5964 6105 -16 610 336 152 18 chr3 149500635 149501116 -68536042 + L2 LINE L2 2739 3272 0 194 232 0 12 chr3 149502282 149502364 -68534794 + CT-rich Low_complexity Low_complexity 1 81 0 201 74 0 0 chr3 149504327 149504354 -68532804 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 456 295 26 39 chr3 149505473 149505629 -68531529 + MER5B DNA MER1_type 16 169 -9 223 234 125 16 chr3 149506120 149506184 -68530974 - L2 LINE L2 -2 3311 3241 297 0 0 0 chr3 149508503 149508536 -68528622 + (TAA)n Simple_repeat Simple_repeat 2 34 0 354 262 28 19 chr3 149508540 149508647 -68528511 - MIR SINE MIR -14 248 141 1118 266 65 29 chr3 149508655 149509068 -68528090 + L2 LINE L2 2529 2956 -358 336 246 35 49 chr3 149509041 149509183 -68527975 + L2 LINE L2 3099 3238 -75 * 666 26 0 0 chr3 149509190 149509268 -68527890 - AluY SINE Alu -4 305 228 999 67 0 0 chr3 149509268 149509387 -68527771 - AluY SINE Alu -192 119 1 335 290 130 0 chr3 149509510 149509610 -68527548 + L2 LINE L2 3160 3272 0 577 215 8 0 chr3 149510581 149510702 -68526456 - MER96B DNA MER1_type? 0 417 296 839 221 29 15 chr3 149511127 149511337 -68525821 + MIR SINE MIR 4 215 -47 713 322 96 18 chr3 149511697 149512029 -68525129 + MLT1K LTR MaLR 3 360 -228 405 133 0 0 chr3 149512094 149512169 -68524989 + (GA)n Simple_repeat Simple_repeat 1 75 0 523 249 94 22 chr3 149512169 149512350 -68524808 + MLT1K LTR MaLR 395 588 0 2376 92 3 0 chr3 149512547 149512850 -68524308 - AluSg SINE Alu -2 308 5 311 305 53 0 chr3 149514929 149515024 -68522134 + MIR3 SINE MIR 81 180 -28 180 0 0 0 chr3 149517187 149517207 -68519951 + (A)n Simple_repeat Simple_repeat 1 20 0 514 259 163 0 chr3 149517355 149517521 -68519637 - MIR SINE MIR 0 262 70 225 261 193 17 chr3 149518028 149518147 -68519011 - L2 LINE L2 -5 3308 3169 400 360 20 30 chr3 149518676 149518876 -68518282 + MIR3 SINE MIR 4 201 -7 195 231 0 77 chr3 149519675 149519740 -68517418 + L3 LINE CR1 1325 1384 -193 747 289 132 9 chr3 149519845 149520382 -68516776 - L1MC4 LINE L1 0 8042 7440 26 0 0 0 chr3 149520531 149520557 -68516601 + AT_rich Low_complexity Low_complexity 1 26 0 408 270 27 18 chr3 149520559 149520670 -68516488 + L3 LINE CR1 1413 1524 -53 303 339 107 34 chr3 149521971 149522148 -68515010 - L2 LINE L2 -20 3252 3063 940 202 0 0 chr3 149522188 149522356 -68514802 + FAM SINE Alu 1 168 -7 233 232 116 87 chr3 149522510 149522648 -68514510 - MIR SINE MIR -33 229 88 227 256 0 0 chr3 149522679 149522718 -68514440 + Tigger7 DNA MER2_type 2449 2487 0 227 229 0 0 chr3 149522741 149522789 -68514369 - MIR SINE MIR -67 195 148 204 293 0 17 chr3 149522900 149522958 -68514200 - L2 LINE L2 -4 3309 3253 428 239 30 45 chr3 149523934 149524068 -68513090 + MIR SINE MIR 46 177 -85 1729 254 35 8 chr3 149524412 149524919 -68512239 - L1ME1 LINE L1 -5 6230 5710 * 2178 243 84 46 chr3 149524900 149526005 -68511153 - L1ME1 LINE L1 -4615 1781 635 1069 268 33 11 chr3 149526003 149526369 -68510789 - L1M4 LINE L1 -1302 4844 4471 * 1688 224 47 59 chr3 149526395 149526988 -68510170 - L1MDb LINE L1 -5030 1379 794 270 0 0 0 chr3 149527304 149527334 -68509824 + (GA)n Simple_repeat Simple_repeat 1 30 0 1279 60 18 0 chr3 149527953 149528121 -68509037 - L1MA2 LINE L1 0 6304 6134 974 83 17 28 chr3 149528503 149528684 -68508474 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 414 141 14 3 chr3 149528898 149529041 -68508117 + MER53 DNA DNA 1 187 -2 1041 287 65 46 chr3 149529817 149530679 -68506479 + L1ME4a LINE L1 5245 6120 -1 567 281 59 46 chr3 149531249 149531487 -68505671 + MIR SINE MIR 20 260 -2 981 174 0 12 chr3 149531793 149531960 -68505198 - FRAM SINE Alu -11 165 1 180 231 0 0 chr3 149532615 149532667 -68504491 + T-rich Low_complexity Low_complexity 1 52 0 340 323 83 10 chr3 149533087 149533279 -68503879 - MIR SINE MIR 0 262 57 191 161 0 0 chr3 149533702 149533733 -68503425 + MER5A DNA MER1_type 44 74 -115 186 150 283 33 chr3 149533733 149533793 -68503365 - MER5A DNA MER1_type -114 75 1 376 269 305 12 chr3 149534368 149534535 -68502623 - MIR SINE MIR -34 228 13 21 36 0 0 chr3 149534976 149535004 -68502154 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 149535113 149535134 -68502024 + AT_rich Low_complexity Low_complexity 1 21 0 203 281 35 113 chr3 149535963 149536194 -68500964 + L2 LINE L2 2594 2806 -508 207 373 25 35 chr3 149536222 149536423 -68500735 - L2 LINE L2 -517 2797 2599 2367 95 0 0 chr3 149537183 149537479 -68499679 - AluSg SINE Alu -14 296 1 826 202 38 6 chr3 149537518 149537701 -68499457 + MER5A DNA MER1_type 1 189 0 580 170 0 89 chr3 149537736 149537871 -68499287 - MER49 LTR ERV1 -800 123 1 474 233 185 5 chr3 149537871 149538060 -68499098 + MLT1H LTR MaLR 327 549 0 377 289 6 13 chr3 149538402 149538558 -68498600 + L1MEd LINE L1 24 178 -5941 324 309 15 22 chr3 149538578 149538714 -68498444 + L1MEd LINE L1 275 409 -5710 304 135 0 19 chr3 149538762 149538814 -68498344 + MLT1H LTR MaLR 473 523 -26 351 260 13 0 chr3 149538814 149538891 -68498267 + L1MEd LINE L1 504 581 -5538 28 29 0 0 chr3 149538902 149538937 -68498221 + AT_rich Low_complexity Low_complexity 1 35 0 253 244 163 49 chr3 149539032 149539155 -68498003 + MIR3 SINE MIR 69 205 -3 256 109 0 0 chr3 149539604 149539647 -68497511 - MLT1B LTR MaLR -53 337 304 288 272 0 49 chr3 149539865 149539946 -68497212 + MLT1K LTR MaLR 142 218 -370 399 273 150 35 chr3 149540060 149540287 -68496871 + MLT1K LTR MaLR 331 583 -5 254 297 63 45 chr3 149541065 149541176 -68495982 + MIR SINE MIR 27 139 -123 25 0 0 0 chr3 149541264 149541289 -68495869 + AT_rich Low_complexity Low_complexity 1 25 0 248 0 31 0 chr3 149543524 149543556 -68493602 + (CA)n Simple_repeat Simple_repeat 2 34 0 1810 268 53 30 chr3 149543562 149544354 -68492804 - L1MC4a LINE L1 -1736 6072 5263 420 306 92 35 chr3 149544358 149544704 -68492454 - L1MC4a LINE L1 -889 5257 4892 834 186 43 0 chr3 149544704 149544844 -68492314 + FRAM SINE Alu 1 146 -30 309 51 0 0 chr3 149544847 149544886 -68492272 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 553 288 58 82 chr3 149544892 149545726 -68491432 - L1MC4a LINE L1 -1252 4894 4093 924 209 17 0 chr3 149545726 149545898 -68491260 + MER5B DNA MER1_type 1 175 -3 553 288 58 82 chr3 149545898 149546191 -68490967 - L1MC4a LINE L1 -2053 4093 3794 315 283 77 100 chr3 149546302 149546652 -68490506 - L1MC4a LINE L1 -2481 3665 3324 190 0 67 0 chr3 149546754 149546784 -68490374 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 7606 24 0 3 chr3 149546784 149548133 -68489025 - L1PA3 LINE L1 -13 6142 4796 7411 20 0 0 chr3 149548134 149548993 -68488165 + L1PA3 LINE L1 3938 4796 -1350 371 298 124 38 chr3 149548992 149549935 -68487223 - L1MC4a LINE L1 -2932 3214 2191 * 22 0 0 0 chr3 149550012 149550034 -68487124 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 149550602 149550630 -68486528 + AT_rich Low_complexity Low_complexity 1 28 0 538 204 224 0 chr3 149550933 149551080 -68486078 + MER5A DNA MER1_type 10 189 0 1973 241 46 33 chr3 149551298 149551842 -68485316 + MLT1H1 LTR MaLR 5 555 0 19339 92 13 10 chr3 149552019 149555641 -68481517 - L1PA7 LINE L1 -7 6462 2828 12598 106 12 38 chr3 149555647 149557811 -68479347 - L1PA7 LINE L1 -4293 2168 6 270 128 0 21 chr3 149557815 149557862 -68479296 - L1MB2 LINE L1 -40 6131 6086 408 316 78 5 chr3 149557900 149558093 -68479065 - MIR SINE MIR -2 260 54 908 189 78 19 chr3 149558370 149558576 -68478582 - MER20 DNA MER1_type 0 219 2 447 187 0 56 chr3 149558645 149558752 -68478406 - MIR SINE MIR -10 252 152 1923 222 108 106 chr3 149559317 149560460 -68476698 - L1MC5 LINE L1 -35 7926 6774 2047 144 131 11 chr3 149560460 149560842 -68476316 - MSTA LTR MaLR 0 428 1 1923 222 108 106 chr3 149560842 149561142 -68476016 - L1MC5 LINE L1 -1187 6774 6476 838 230 95 83 chr3 149561389 149561541 -68475617 - L1MC4a LINE L1 -1630 6178 6029 2158 102 7 14 chr3 149561541 149561835 -68475323 + AluSp SINE Alu 1 292 -21 838 230 95 83 chr3 149561835 149562199 -68474959 - L1MC4a LINE L1 -1779 6029 5656 466 282 66 66 chr3 149562214 149562854 -68474304 - L1MEd LINE L1 -815 1675 1002 556 296 122 38 chr3 149564473 149564686 -68472472 + MIR SINE MIR 5 235 -27 25 31 0 0 chr3 149564850 149564882 -68472276 + AT_rich Low_complexity Low_complexity 1 32 0 753 263 8 19 chr3 149566050 149566276 -68470882 - MIR SINE MIR 0 262 40 217 304 143 0 chr3 149568437 149568549 -68468609 + L2 LINE L2 3184 3311 -2 1849 175 42 11 chr3 149569373 149569727 -68467431 - MLT1A1 LTR MaLR 0 365 1 1491 239 88 15 chr3 149570031 149570495 -68466663 + MLT1H LTR MaLR 52 549 0 290 294 110 9 chr3 149570662 149570771 -68466387 + L2 LINE L2 3151 3270 -2 629 295 44 26 chr3 149571062 149571289 -68465869 - MIR SINE MIR -4 258 28 218 341 29 98 chr3 149571673 149571919 -68465239 - L2 LINE L2 -86 3186 2958 786 188 0 0 chr3 149571952 149572085 -68465073 + FLAM_A SINE Alu 1 133 0 1944 164 3 3 chr3 149572496 149572806 -68464352 + AluJo SINE Alu 2 311 -1 22 35 0 0 chr3 149572861 149572890 -68464268 + AT_rich Low_complexity Low_complexity 1 29 0 1353 211 101 28 chr3 149573008 149573443 -68463715 + MLT1C LTR MaLR 1 467 0 24 32 0 0 chr3 149574038 149574069 -68463089 + AT_rich Low_complexity Low_complexity 1 31 0 547 29 0 0 chr3 149574702 149574770 -68462388 - L1PA8 LINE L1 -8 6164 6097 2660 109 3 3 chr3 149575063 149575438 -68461720 + THE1C LTR MaLR 1 375 0 9809 110 45 38 chr3 149575438 149577007 -68460151 + THE1C-int LTR MaLR 1 1580 0 2531 114 11 16 chr3 149577007 149577384 -68459774 + THE1C LTR MaLR 1 375 0 389 76 0 130 chr3 149580836 149580928 -68456230 + L1MA10 LINE L1 6253 6332 -2 1281 147 105 151 chr3 149580990 149581439 -68455719 - THE1C LTR MaLR 0 428 1 271 235 73 15 chr3 149581871 149581939 -68455219 - MIR3 SINE MIR -29 179 108 283 337 0 0 chr3 149583000 149583086 -68454072 - L2 LINE L2 -1 3271 3186 637 270 74 9 chr3 149583561 149583776 -68453382 - MIR SINE MIR 0 262 34 249 328 75 35 chr3 149583990 149584164 -68452994 + L2 LINE L2 2919 3099 -173 1723 189 3 3 chr3 149584164 149584472 -68452686 - AluJb SINE Alu 0 308 1 456 303 118 23 chr3 149584869 149585090 -68452068 + MIR SINE MIR 2 243 -19 1227 238 76 21 chr3 149585815 149586197 -68450961 + LTR16C LTR ERVL 89 491 0 187 319 0 0 chr3 149586207 149586254 -68450904 + L2 LINE L2 3247 3293 -20 21 0 0 0 chr3 149586408 149586429 -68450729 + AT_rich Low_complexity Low_complexity 1 21 0 737 293 43 31 chr3 149588486 149588838 -68448320 - L1MEc LINE L1 -5981 415 60 202 311 0 0 chr3 149588862 149588907 -68448251 + L2 LINE L2 2589 2633 -681 799 308 159 19 chr3 149588920 149589348 -68447810 + L2 LINE L2 2826 3313 0 281 312 249 6 chr3 149589527 149589700 -68447458 + MIR SINE MIR 13 227 -35 763 292 75 19 chr3 149589813 149590584 -68446574 + L1MDa LINE L1 1296 2145 -4493 1120 143 23 46 chr3 149590979 149591196 -68445962 + AluJo SINE Alu 63 274 -38 189 0 0 0 chr3 149591202 149591223 -68445935 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 7773 3 0 0 chr3 149591291 149592368 -68444790 + L1HS LINE L1 5079 6155 0 324 328 42 21 chr3 149592431 149592623 -68444535 + L1MDa LINE L1 2798 2993 -3547 17395 165 34 23 chr3 149592738 149600360 -68436798 - L1MA3 LINE L1 0 7724 17 6402 229 63 23 chr3 149600381 149602349 -68434809 + L1MB8 LINE L1 3084 5351 -1221 10111 40 22 0 chr3 149602349 149604350 -68432808 + L1PA4 LINE L1 4135 6152 -3 6402 229 63 23 chr3 149604350 149605600 -68431558 + L1MB8 LINE L1 5351 6549 -23 3198 257 33 21 chr3 149605610 149606920 -68430238 - L1MDa LINE L1 -2708 3832 2507 207 88 0 0 chr3 149606923 149606957 -68430201 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 5620 18 19 18 chr3 149606957 149607639 -68429519 - L1PA4 LINE L1 -16 6139 5457 2177 48 4 0 chr3 149607639 149608017 -68429141 + L1PA4 LINE L1 5098 5476 -678 717 174 40 49 chr3 149608017 149608241 -68428917 - L1MDa LINE L1 -4042 2498 2277 28055 119 20 60 chr3 149608299 149609081 -68428077 - L1PA7 LINE L1 -3 6151 5339 6597 40 2 0 chr3 149609081 149609876 -68427282 + L1PA4 LINE L1 5357 6155 0 28055 119 20 60 chr3 149609876 149615512 -68421646 - L1PA7 LINE L1 -815 5339 12 3172 153 10 5 chr3 149615516 149616125 -68421033 - L1P LINE L1 -1247 4899 4288 6526 87 2 18 chr3 149616125 149617222 -68419936 + L1PA11 LINE L1 5081 6171 -3 314 318 9 9 chr3 149617250 149617360 -68419798 - MLT1K LTR MaLR -327 261 152 21 0 0 0 chr3 149617533 149617554 -68419604 + AT_rich Low_complexity Low_complexity 1 21 0 7588 135 38 9 chr3 149617620 149618821 -68418337 + L1PA10 LINE L1 4072 5339 -829 275 48 0 24 chr3 149618821 149618863 -68418295 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 7588 135 38 9 chr3 149618863 149619714 -68417444 + L1PA10 LINE L1 5339 6164 -4 30 0 0 0 chr3 149619695 149619725 -68417433 + AT_rich Low_complexity Low_complexity 1 30 0 298 304 182 47 chr3 149620622 149620802 -68416356 - MIR SINE MIR -31 231 28 293 176 0 0 chr3 149620876 149620927 -68416231 - L2 LINE L2 -1 3312 3262 258 330 30 0 chr3 149621097 149621197 -68415961 - MER103 DNA DNA 0 166 64 194 207 17 0 chr3 149621581 149621639 -68415519 + (TATG)n Simple_repeat Simple_repeat 2 60 0 266 263 13 13 chr3 149621639 149621715 -68415443 + CT-rich Low_complexity Low_complexity 4 79 0 729 292 40 39 chr3 149621913 149622341 -68414817 - L1ME3 LINE L1 -263 5907 5479 1806 128 62 10 chr3 149622448 149622736 -68414422 - AluSg SINE Alu -2 308 6 1335 231 5 62 chr3 149623049 149623438 -68413720 - MLT1A2 LTR MaLR -4 370 4 1935 213 34 0 chr3 149623441 149623849 -68413309 - MLT1A2-int LTR MaLR 0 1735 1314 251 205 128 0 chr3 149623999 149624077 -68413081 - MLT1A2-int LTR MaLR -968 767 680 3424 199 9 17 chr3 149624145 149624731 -68412427 - MLT1A2-int LTR MaLR -632 739 159 1929 119 80 42 chr3 149624731 149625092 -68412066 + THE1C LTR MaLR 1 375 0 3424 199 9 17 chr3 149625092 149625250 -68411908 - MLT1A2-int LTR MaLR -1212 159 1 1190 185 88 73 chr3 149625250 149625634 -68411524 - MLT1B LTR MaLR 0 390 1 312 263 96 6 chr3 149625957 149626113 -68411045 - L1ME4a LINE L1 -1 6120 5951 520 302 79 0 chr3 149626214 149626429 -68410729 - L1ME4a LINE L1 -392 5729 5498 308 170 21 32 chr3 149626515 149626609 -68410549 + CT-rich Low_complexity Low_complexity 4 96 0 2466 67 7 0 chr3 149627802 149628099 -68409059 + AluY SINE Alu 1 299 -12 21246 89 5 6 chr3 149628702 149632580 -68404578 - L1PA7 LINE L1 -3 6151 2281 8583 75 4 2 chr3 149632581 149633833 -68403325 + L1P LINE L1 2288 3542 -2604 3222 61 24 2 chr3 149633934 149634393 -68402765 - L1P3 LINE L1 -432 5722 5254 27 0 0 0 chr3 149634635 149634662 -68402496 + AT_rich Low_complexity Low_complexity 1 27 0 237 122 49 0 chr3 149635311 149635352 -68401806 - THE1C-int LTR MaLR -1537 43 1 1994 119 3 3 chr3 149635352 149635654 -68401504 - THE1C LTR MaLR 0 375 74 256 357 42 49 chr3 149736440 149736583 -68300575 - L2 LINE L2 -9 3263 3122 457 300 52 43 chr3 149736656 149736889 -68300269 + MIR SINE MIR 22 256 -6 2041 140 0 9 chr3 149737681 149737996 -68299162 - AluSx SINE Alu 0 312 1 24572 47 42 2 chr3 149738517 149741605 -68295553 - L1P LINE L1 -2932 3214 4 1110 160 0 0 chr3 149741605 149741792 -68295366 + L1MB8 LINE L1 5791 5977 -201 * 1533 223 101 5 chr3 149741783 149742209 -68294949 - L1M4 LINE L1 -1773 4356 3890 1047 227 96 11 chr3 149742209 149742575 -68294583 + L1M4 LINE L1 4353 4749 -1380 880 204 62 0 chr3 149742812 149742988 -68294170 + MER5A DNA MER1_type 1 187 -2 247 205 161 45 chr3 149743169 149743265 -68293893 + L1ME4a LINE L1 5982 6094 -27 1975 128 7 3 chr3 149743265 149743555 -68293603 - AluSx SINE Alu -21 291 1 247 205 161 45 chr3 149743555 149743570 -68293588 + L1ME4a LINE L1 6094 6106 -15 222 281 78 55 chr3 149745361 149745489 -68291669 + MIR SINE MIR 76 206 -56 301 308 54 8 chr3 149745736 149745866 -68291292 - L3 LINE CR1 -103 1474 1339 2460 77 3 0 chr3 149745875 149746185 -68290973 - AluSp SINE Alu -2 311 1 493 322 95 29 chr3 149746706 149747677 -68289481 - L1M4 LINE L1 -2397 3732 2698 182 191 103 59 chr3 149750141 149750209 -68286949 + L2 LINE L2 2577 2647 -667 577 293 108 24 chr3 149750239 149750526 -68286632 + L2 LINE L2 2989 3299 -14 186 103 0 0 chr3 149750527 149750556 -68286602 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 256 336 8 8 chr3 149751455 149751577 -68285581 + CT-rich Low_complexity Low_complexity 3 124 0 492 314 68 16 chr3 149753250 149753498 -68283660 - MIR SINE MIR 0 262 2 198 0 0 0 chr3 149754996 149755018 -68282140 + (A)n Simple_repeat Simple_repeat 1 22 0 22710 118 17 86 chr3 149755775 149760117 -68277041 + L1PA7 LINE L1 3 4043 -2103 11107 81 8 9 chr3 149760117 149762317 -68274841 + L1PA7 LINE L1 3948 6152 -2 26872 63 1 0 chr3 149762458 149765837 -68271321 + L1P LINE L1 3 3386 -2760 409 268 131 45 chr3 149766104 149766418 -68270740 - HAL1 LINE L1 -1054 1453 1113 2299 153 60 38 chr3 149766736 149767000 -68270158 + MSTA LTR MaLR 1 258 -170 2418 53 0 0 chr3 149767000 149767283 -68269875 + AluY SINE Alu 1 283 -28 185 0 0 39 chr3 149767286 149767312 -68269846 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2299 153 60 38 chr3 149767312 149767462 -68269696 + MSTA LTR MaLR 259 428 0 206 289 12 36 chr3 149768164 149768247 -68268911 - L2 LINE L2 0 3272 3192 226 222 111 49 chr3 149768266 149768347 -68268811 + MER117 DNA MER1_type 56 141 -56 1088 302 116 46 chr3 149768892 149770164 -68266994 - L1MEd LINE L1 -4874 1257 7 22 0 0 0 chr3 149772786 149772808 -68264350 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 149772851 149772872 -68264286 + AT_rich Low_complexity Low_complexity 1 21 0 626 326 49 19 chr3 149773210 149773679 -68263479 + L1MCc LINE L1 17 499 -5924 295 95 0 0 chr3 149773778 149773820 -68263338 - L1MC/D LINE L1 -603 5730 5689 1852 138 27 59 chr3 149773821 149774192 -68262966 - Tigger7 DNA MER2_type 0 2487 2129 1620 227 33 3 chr3 149774272 149774838 -68262320 - L1MC/D LINE L1 -721 5449 4861 1773 210 75 91 chr3 149775506 149776436 -68260722 + L1MC5 LINE L1 6564 7485 -476 1712 240 49 52 chr3 149776510 149777123 -68260035 - L1ME3A LINE L1 -5 6165 5555 387 316 67 13 chr3 149777264 149777489 -68259669 - L1ME LINE L1 -367 5803 5567 230 336 0 15 chr3 149777492 149777626 -68259532 - L1ME LINE L1 -644 5520 5389 435 38 0 0 chr3 149777626 149777679 -68259479 + (TG)n Simple_repeat Simple_repeat 2 54 0 245 275 33 39 chr3 149777705 149777887 -68259271 - L1ME LINE L1 -820 5326 5146 205 182 0 91 chr3 149778109 149778164 -68258994 - L2 LINE L2 0 3313 3264 5029 174 15 18 chr3 149778258 149779317 -68257841 + L1MC1 LINE L1 5176 6230 -103 447 92 0 0 chr3 149779317 149779382 -68257776 + (TG)n Simple_repeat Simple_repeat 2 66 0 625 143 0 9 chr3 149779390 149779495 -68257663 - MLT1A2 LTR MaLR 0 374 271 2429 57 0 0 chr3 149779495 149779795 -68257363 - L1PA7 LINE L1 -14 6140 5841 1236 230 18 3 chr3 149780465 149780800 -68256358 - L1P LINE L1 -825 5321 4982 356 131 0 0 chr3 149780800 149780861 -68256297 + L1PA16 LINE L1 6100 6160 -6 680 269 54 124 chr3 149781024 149781682 -68255476 + L2 LINE L2 2694 3313 0 183 100 0 0 chr3 149781719 149781749 -68255409 + (TC)n Simple_repeat Simple_repeat 1 30 0 1519 129 0 5 chr3 149781887 149782097 -68255061 + AluSg/x SINE Alu 84 292 -18 3119 147 5 1 chr3 149783699 149784755 -68252403 + L1P LINE L1 1448 5286 -860 4109 209 124 95 chr3 149784762 149785505 -68251653 + L1MD3 LINE L1 5993 6712 -1283 489 17 0 0 chr3 149785505 149785563 -68251595 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 7223 37 1 3 chr3 149785572 149787209 -68249949 + L1PA5 LINE L1 4528 6162 0 4109 209 124 95 chr3 149787209 149787814 -68249344 + L1MD3 LINE L1 6719 7304 -691 2440 65 0 13 chr3 149787814 149788120 -68249038 - AluY SINE Alu -8 303 2 4109 209 124 95 chr3 149788120 149788694 -68248464 + L1MD3 LINE L1 7304 7985 -10 31 0 0 0 chr3 149788997 149789028 -68248130 + AT_rich Low_complexity Low_complexity 1 31 0 460 67 0 135 chr3 149789102 149789191 -68247967 + MADE1 DNA Mariner 4 80 0 489 333 65 34 chr3 149789736 149790192 -68246966 - L1MEc LINE L1 -773 1803 1358 266 344 11 21 chr3 149790408 149790501 -68246657 - L2 LINE L2 -8 3264 3173 474 361 54 44 chr3 149791485 149791981 -68245177 + L2 LINE L2 2164 2664 -650 377 246 126 23 chr3 149792303 149792518 -68244640 + L1M4 LINE L1 2928 3164 -2982 622 260 46 92 chr3 149792550 149792919 -68244239 - MER21B LTR ERV1 -149 714 363 295 220 75 0 chr3 149792941 149793041 -68244117 + L1ME2 LINE L1 6040 6154 -8 3274 236 106 46 chr3 149793073 149793180 -68243978 + L1MC4a LINE L1 6346 6445 -1363 2238 133 11 8 chr3 149793180 149793534 -68243624 - THE1A LTR MaLR 0 355 1 11900 87 10 0 chr3 149793534 149795098 -68242060 - THE1A-int LTR MaLR 0 1580 2 2336 100 26 9 chr3 149795099 149795448 -68241710 - THE1A LTR MaLR 0 355 1 3274 236 106 46 chr3 149795448 149796629 -68240529 + L1MC4a LINE L1 6444 7714 -94 2374 93 0 0 chr3 149797927 149798229 -68238929 - AluSc SINE Alu -7 302 1 2275 138 5 10 chr3 149798563 149798961 -68238197 - L1MB2 LINE L1 -12 6159 5764 342 211 0 0 chr3 149799002 149799073 -68238085 - L1MB2 LINE L1 -888 5258 5188 580 154 0 0 chr3 149799254 149799358 -68237800 + L1MA3 LINE L1 6202 6305 0 1171 255 55 61 chr3 149799742 149800201 -68236957 + L1M4 LINE L1 44 499 -6043 3891 153 61 14 chr3 149800238 149801069 -68236089 + L1MB7 LINE L1 5315 6184 0 3397 62 7 7 chr3 149804000 149804448 -68232710 + LTR7 LTR ERV1 1 448 -2 14614 111 8 17 chr3 149804450 149807280 -68229878 + HERVH LTR ERV1 1 2987 -4726 5898 80 2 2 chr3 149807274 149808128 -68229030 + HERVH LTR ERV1 3140 3993 -3720 * 4380 124 0 0 chr3 149808130 149808792 -68228366 + HERVH LTR ERV1 4488 5149 -2564 1346 120 19 0 chr3 149808793 149809009 -68228149 + HERVH LTR ERV1 5600 5819 -1894 452 97 0 14 chr3 149809009 149809081 -68228077 + HERVH LTR ERV1 7324 7394 -319 393 16 0 82 chr3 149809080 149809141 -68228017 + HERVH LTR ERV1 7658 7713 0 * 3230 59 5 7 chr3 149809141 149809584 -68227574 + LTR7 LTR ERV1 1 442 -8 638 251 55 0 chr3 149812134 149812297 -68224861 + MIR SINE MIR 1 172 -90 383 272 201 28 chr3 149812316 149812570 -68224588 - L3 LINE CR1 -109 1468 1171 363 176 168 0 chr3 149812979 149813098 -68224060 + L1MC4 LINE L1 7904 8042 0 267 291 70 20 chr3 149813126 149813325 -68223833 + L1MC/D LINE L1 5682 5890 -1918 269 152 15 61 chr3 149814694 149814760 -68222398 + CT-rich Low_complexity Low_complexity 3 65 0 252 184 0 0 chr3 149817132 149817181 -68219977 + (CACCAT)n Simple_repeat Simple_repeat 6 54 0 319 273 82 0 chr3 149817207 149817317 -68219841 - MIR SINE MIR -65 197 79 258 32 0 0 chr3 149818925 149818956 -68218202 + (CA)n Simple_repeat Simple_repeat 2 32 0 181 279 136 64 chr3 149818991 149819131 -68218027 + L2 LINE L2 2503 2652 -662 435 300 129 8 chr3 149819426 149819689 -68217469 - L1ME LINE L1 -363 5758 5464 315 344 55 22 chr3 149820775 149820958 -68216200 - MIR3 SINE MIR -14 194 6 225 269 15 15 chr3 149821607 149821674 -68215484 - MIR3 SINE MIR -138 70 4 1884 148 7 0 chr3 149821905 149822238 -68214920 + AluSx SINE Alu 5 339 0 662 306 53 61 chr3 149822838 149823234 -68213924 + HAL1 LINE L1 1111 1503 -1004 329 323 11 11 chr3 149823248 149823341 -68213817 + MIR SINE MIR 37 129 -133 257 309 89 16 chr3 149823655 149823778 -68213380 + MIR SINE MIR 66 197 -65 1381 178 4 62 chr3 149824746 149825021 -68212137 + AluJb SINE Alu 33 291 -21 336 220 215 0 chr3 149825359 149825536 -68211622 + HAL1 LINE L1 161 375 -2132 1285 56 0 6 chr3 149825552 149825712 -68211446 + AluY SINE Alu 152 310 -1 227 309 67 57 chr3 149825772 149825982 -68211176 + HAL1 LINE L1 421 632 -1875 702 273 167 23 chr3 149826015 149826579 -68210579 + HAL1 LINE L1 774 1418 -1089 462 229 8 15 chr3 149826803 149826934 -68210224 + HAL1 LINE L1 1558 1687 -820 334 266 92 60 chr3 149826955 149827173 -68209985 + HAL1 LINE L1 1881 2105 -402 361 223 74 51 chr3 149827387 149827562 -68209596 + HAL1 LINE L1 2329 2507 0 565 291 83 12 chr3 149827756 149828093 -68209065 - L1ME4a LINE L1 -238 5883 5523 198 315 124 0 chr3 149828759 149828848 -68208310 - MIR SINE MIR 0 262 163 256 319 22 0 chr3 149828975 149829066 -68208092 + L3 LINE CR1 1376 1468 -109 246 308 66 0 chr3 149829400 149829491 -68207667 - MIR SINE MIR -74 188 92 194 307 0 57 chr3 149830286 149830374 -68206784 + L2 LINE L2 3212 3294 -19 364 255 57 96 chr3 149830410 149830567 -68206591 + MER5A DNA MER1_type 2 152 -37 645 236 110 39 chr3 149830606 149830895 -68206263 - MER58B DNA MER1_type -16 325 6 212 379 81 0 chr3 149831050 149831137 -68206021 - L2 LINE L2 -13 3300 3207 250 240 0 0 chr3 149831226 149831276 -68205882 - MER58B DNA MER1_type -25 316 267 2221 196 24 7 chr3 149832668 149833087 -68204071 + MSTB LTR MaLR 1 426 0 279 276 0 51 chr3 149833243 149833341 -68203817 + MIR SINE MIR 119 211 -51 1609 173 23 0 chr3 149833743 149834003 -68203155 - AluJo SINE Alu -46 266 1 343 335 32 19 chr3 149834371 149834529 -68202629 + MIR SINE MIR 7 166 -96 295 259 63 81 chr3 149836035 149836209 -68200949 + MLT1J LTR MaLR 14 184 -327 493 176 0 11 chr3 149836351 149836442 -68200716 - 5S rRNA rRNA -31 90 1 289 261 166 40 chr3 149836457 149836710 -68200448 + MLT1J LTR MaLR 227 511 0 26 30 0 0 chr3 149841162 149841195 -68195963 + AT_rich Low_complexity Low_complexity 1 33 0 186 43 0 0 chr3 149841549 149841572 -68195586 + (GA)n Simple_repeat Simple_repeat 2 24 0 202 330 22 0 chr3 149841678 149841769 -68195389 + CT-rich Low_complexity Low_complexity 1 93 0 21 0 0 0 chr3 149842029 149842050 -68195108 + AT_rich Low_complexity Low_complexity 1 21 0 391 299 163 18 chr3 149842050 149842271 -68194887 - MIR SINE MIR -1 261 9 2330 90 0 10 chr3 149842619 149842929 -68194229 + AluSc SINE Alu 1 307 -2 1158 203 132 61 chr3 149842973 149843382 -68193776 - L2 LINE L2 0 3313 2876 25 51 0 0 chr3 149844771 149844810 -68192348 + AT_rich Low_complexity Low_complexity 1 39 0 270 313 45 9 chr3 149845114 149845226 -68191932 - MIR3 SINE MIR -12 196 81 2365 222 51 4 chr3 149845350 149845860 -68191298 - MLT1F LTR MaLR -8 534 1 197 363 0 0 chr3 149845880 149845960 -68191198 - L3b LINE CR1 -143 1440 1361 203 296 115 21 chr3 149846051 149846167 -68190991 - MIR SINE MIR -76 132 6 * 360 329 98 9 chr3 149846138 149846463 -68190695 + L2 LINE L2 539 892 -2422 2135 133 107 0 chr3 149846471 149846846 -68190312 + MLT2C2 LTR ERVL 1 415 -49 187 306 93 28 chr3 149846886 149846994 -68190164 + L2 LINE L2 926 1040 -2274 1043 151 54 5 chr3 149847052 149847257 -68189901 - MER2 DNA MER2_type -3 342 128 * 1156 159 5 0 chr3 149847248 149847443 -68189715 - MER2 DNA MER2_type -141 204 9 292 386 35 16 chr3 149847629 149847883 -68189275 + L2 LINE L2 1239 1497 -1817 180 363 65 50 chr3 149848027 149848289 -68188869 - L2 LINE L2 -2564 750 485 620 207 33 7 chr3 149848837 149848987 -68188171 - MLT1A2 LTR MaLR -220 154 1 384 276 5 121 chr3 149849360 149849559 -68187599 + MER5B DNA MER1_type 3 178 0 2029 191 65 22 chr3 149849743 149850189 -68186969 - MLT1C LTR MaLR 0 467 3 364 311 105 18 chr3 149850219 149850496 -68186662 + MLT1I LTR MaLR 109 409 0 268 312 26 0 chr3 149851373 149851450 -68185708 - L2 LINE L2 -3 3269 3191 192 245 0 0 chr3 149851929 149851982 -68185176 + GA-rich Low_complexity Low_complexity 2 54 0 322 339 100 17 chr3 149852178 149852358 -68184800 + MIR3 SINE MIR 14 208 0 221 270 16 16 chr3 149852590 149852653 -68184505 - MIR SINE MIR -105 157 95 29 47 0 0 chr3 149853469 149853512 -68183646 + AT_rich Low_complexity Low_complexity 1 43 0 5497 115 28 33 chr3 149854401 149855350 -68181808 - L1PA15 LINE L1 -1 6815 5842 13125 207 36 46 chr3 149855454 149859622 -68177536 - L1PA15 LINE L1 -1000 5797 1697 1887 152 0 39 chr3 149859622 149859931 -68177227 + AluSx SINE Alu 3 299 -13 13125 207 36 46 chr3 149859931 149861610 -68175548 - L1PA15 LINE L1 -5100 1697 2 272 170 19 0 chr3 149861836 149861889 -68175269 - L1M4 LINE L1 -1206 4940 4887 10346 137 19 69 chr3 149861942 149864040 -68173118 + L1P LINE L1 11 2002 -4144 331 307 76 22 chr3 149864210 149864789 -68172369 - L1M4 LINE L1 -2145 4001 3392 * 4716 241 74 32 chr3 149864785 149864882 -68172276 + L1M4 LINE L1 2927 3019 -3127 6388 129 69 30 chr3 149864882 149866066 -68171092 - Tigger3b DNA MER2_type 0 1231 1 4716 241 74 32 chr3 149866066 149868014 -68169144 + L1M4 LINE L1 3019 5057 -1089 7973 230 35 45 chr3 149868048 149868340 -68168818 + L1P LINE L1 1948 2241 -3905 2431 71 10 0 chr3 149868340 149868637 -68168521 + AluY SINE Alu 1 300 -11 7973 230 35 45 chr3 149868637 149869185 -68167973 + L1P LINE L1 2241 2793 -3353 588 40 27 0 chr3 149869185 149869260 -68167898 - AluY SINE Alu -10 300 224 7973 230 35 45 chr3 149869260 149871064 -68166094 + L1P LINE L1 2793 4642 -1504 28288 74 16 5 chr3 149871067 149876614 -68160544 + L1PA6 LINE L1 552 6163 0 24 0 0 0 chr3 149876655 149876679 -68160479 + AT_rich Low_complexity Low_complexity 1 24 0 385 293 83 22 chr3 149876818 149876999 -68160159 - L1M4 LINE L1 -1587 4559 4368 24 32 0 0 chr3 149877149 149877180 -68159978 + AT_rich Low_complexity Low_complexity 1 31 0 255 277 263 0 chr3 149877511 149877648 -68159510 + L3 LINE CR1 1198 1370 -207 552 135 21 10 chr3 149878319 149878415 -68158743 - MLT1C LTR MaLR 0 467 371 1313 209 104 17 chr3 149878503 149878848 -68158310 - MLT1C LTR MaLR -92 375 1 536 280 90 14 chr3 149878882 149879239 -68157919 - L1ME3A LINE L1 -233 5937 5554 2539 57 3 0 chr3 149879242 149879560 -68157598 + L1PA8 LINE L1 5841 6159 -13 347 219 163 16 chr3 149880015 149880138 -68157020 - L1MC4 LINE L1 0 8042 7902 214 204 54 27 chr3 149880141 149880288 -68156870 + (TTATA)n Simple_repeat Simple_repeat 2 152 0 745 235 127 8 chr3 149880298 149880558 -68156600 - L1MC4 LINE L1 -144 7898 7608 415 236 18 0 chr3 149880636 149880746 -68156412 + LTR43 LTR ERV1 185 296 -306 1796 279 153 5 chr3 149881035 149881806 -68155352 + L2 LINE L2 1655 2539 -775 1098 207 20 118 chr3 149882246 149882637 -68154521 + MLT1A1 LTR MaLR 1 353 -12 1664 183 30 41 chr3 149883063 149883430 -68153728 - MLT1A1 LTR MaLR -2 363 1 967 215 113 45 chr3 149883974 149884397 -68152761 - MLT1C LTR MaLR -19 448 1 266 342 112 43 chr3 149884473 149884918 -68152240 - L2 LINE L2 -715 2599 2124 261 337 10 0 chr3 149885257 149885358 -68151800 - L2 LINE L2 -2 3311 3210 14362 132 18 3 chr3 149885389 149887746 -68149412 - Tigger1 DNA MER2_type 0 2418 26 722 121 0 0 chr3 149887770 149887869 -68149289 - AluSg/x SINE Alu -14 295 197 361 358 88 0 chr3 149887894 149888109 -68149049 - L2 LINE L2 -1037 2277 2044 265 319 108 14 chr3 149888422 149888635 -68148523 + MLT1L LTR MaLR 359 591 -24 2005 92 0 29 chr3 149888847 149889120 -68148038 - AluY SINE Alu -15 296 32 565 267 79 0 chr3 149889809 149889974 -68147184 + MER5B DNA MER1_type 1 178 0 1849 118 17 0 chr3 149890191 149890479 -68146679 + L1M4 LINE L1 5511 5803 -381 24831 36 4 0 chr3 149890487 149894314 -68142844 - L1PA2 LINE L1 -2 6153 2314 16672 32 5 1 chr3 149894414 149897191 -68139967 + L1PA4 LINE L1 3366 6152 -3 313 361 50 29 chr3 149897246 149897526 -68139632 + HAL1 LINE L1 2222 2507 0 226 241 0 0 chr3 149897564 149897622 -68139536 - L1ME3 LINE L1 -2 6160 6103 1713 219 85 97 chr3 149897623 149898717 -68138441 - L1ME3 LINE L1 -102 6060 5004 333 0 0 0 chr3 149898732 149898769 -68138389 + (TC)n Simple_repeat Simple_repeat 2 38 0 333 244 161 28 chr3 149899047 149899227 -68137931 + LTR67 LTR ERVL 352 555 -2 27 49 0 0 chr3 149899579 149899620 -68137538 + AT_rich Low_complexity Low_complexity 1 41 0 198 0 0 0 chr3 149899756 149899778 -68137380 + (T)n Simple_repeat Simple_repeat 1 22 0 189 147 0 0 chr3 149899984 149900018 -68137140 + (TC)n Simple_repeat Simple_repeat 2 35 0 184 279 89 13 chr3 149900096 149900175 -68136983 + L2 LINE L2 3139 3223 -49 606 293 15 39 chr3 149900706 149900911 -68136247 - MIR SINE MIR -48 214 15 232 378 8 0 chr3 149900924 149901043 -68136115 - L2 LINE L2 -1305 2009 1890 3612 108 11 9 chr3 149901088 149901730 -68135428 + L1PB2 LINE L1 5316 6149 -2 277 253 212 10 chr3 149901931 149902030 -68135128 + L2 LINE L2 3154 3272 0 315 305 29 0 chr3 149903355 149903460 -68133698 + LTR37B LTR ERV1 17 124 -344 3497 135 5 26 chr3 149903468 149903574 -68133584 + L1MA5A LINE L1 5426 5533 -764 4339 92 14 5 chr3 149903574 149904193 -68132965 - L1PA10 LINE L1 0 6168 5544 3497 135 5 26 chr3 149904193 149904694 -68132464 + L1MA5A LINE L1 5533 6020 -277 * 11772 181 17 66 chr3 149904693 149906281 -68130877 + L1MA3 LINE L1 1645 3310 -4255 2109 117 0 7 chr3 149906281 149906579 -68130579 + AluY SINE Alu 1 296 -15 11772 181 17 66 chr3 149906579 149907756 -68129402 + L1MA3 LINE L1 3310 4544 -3021 895 152 0 0 chr3 149907756 149907888 -68129270 + AluSq/x SINE Alu 1 132 -180 11772 181 17 66 chr3 149907888 149909508 -68127650 + L1MA3 LINE L1 4544 5797 -1768 5160 124 22 6 chr3 149909527 149910357 -68126801 + L1P3 LINE L1 5 847 -5614 3590 87 8 10 chr3 149910357 149910862 -68126296 + L1PA7 LINE L1 5651 6154 0 5203 135 13 10 chr3 149910865 149912662 -68124496 + L1MA3 LINE L1 5796 7724 0 922 229 11 25 chr3 149912678 149912962 -68124196 + L1MC5 LINE L1 7645 7924 -37 763 139 0 7 chr3 149913747 149913884 -68123274 - L1MA9 LINE L1 -6 6306 6171 252 143 0 0 chr3 149913922 149913964 -68123194 + (TG)n Simple_repeat Simple_repeat 2 43 0 696 191 24 0 chr3 149913990 149914116 -68123042 + FLAM_A SINE Alu 14 142 0 1397 150 8 8 chr3 149914116 149914382 -68122776 + L1MA9 LINE L1 5828 6093 -219 267 322 107 16 chr3 149914967 149915088 -68122070 - MIR SINE MIR -122 140 9 679 169 25 0 chr3 149915738 149915856 -68121302 - MER45A DNA AcHobo 0 178 58 274 366 72 0 chr3 149915884 149916037 -68121121 + L2 LINE L2 3109 3272 0 831 221 52 70 chr3 149916556 149916828 -68120330 - MLT1K LTR MaLR 0 588 322 228 356 70 0 chr3 149917259 149917374 -68119784 - L2 LINE L2 -26 3246 3124 209 314 47 47 chr3 149917497 149917583 -68119575 + L2 LINE L2 3137 3222 -50 182 339 0 0 chr3 149917651 149917707 -68119451 - L2 LINE L2 -16 3297 3242 386 223 11 0 chr3 149918510 149918604 -68118554 + Charlie8 DNA MER1_type 97 191 -2226 2801 210 72 32 chr3 149918633 149919425 -68117733 + MER99 DNA DNA 2 825 -3 797 247 115 17 chr3 149921034 149921269 -68115889 + MIR SINE MIR 5 262 0 231 295 70 31 chr3 149921968 149922097 -68115061 + L1ME LINE L1 5531 5664 -457 704 287 104 13 chr3 149922334 149922564 -68114594 + MIR SINE MIR 11 261 -1 2204 123 0 0 chr3 149922574 149922866 -68114292 - AluSx SINE Alu -20 292 1 708 230 103 19 chr3 149923308 149923569 -68113589 + MER102a DNA MER1_type 45 327 -3 525 122 82 10 chr3 149925102 149925200 -68111958 - MIR SINE MIR -76 186 82 281 270 0 14 chr3 149925221 149925295 -68111863 - L2 LINE L2 -78 3194 3122 776 302 83 72 chr3 149926740 149927815 -68109343 + L1MEd LINE L1 255 1341 -5031 258 295 115 10 chr3 149927806 149928009 -68109149 + L1MEd LINE L1 1259 1504 -4868 * 2258 186 65 35 chr3 149928030 149928222 -68108936 + L1MD1 LINE L1 5114 5299 -943 2409 60 0 10 chr3 149928222 149928522 -68108636 - AluY SINE Alu -14 297 1 2258 186 65 35 chr3 149928522 149928787 -68108371 + L1MD1 LINE L1 5299 5555 -687 2258 165 62 14 chr3 149928787 149929267 -68107891 + L1MD1 LINE L1 5736 6242 0 233 265 0 0 chr3 149929267 149929335 -68107823 + L1MEd LINE L1 3200 3267 -3115 685 301 79 25 chr3 149929351 149929945 -68107213 + L1MEd LINE L1 3306 3931 -2451 864 281 37 16 chr3 149929959 149930380 -68106778 + L1MEd LINE L1 4650 5078 -1304 369 0 0 0 chr3 149930463 149930504 -68106654 + (CA)n Simple_repeat Simple_repeat 2 42 0 772 299 100 26 chr3 149931134 149931525 -68105633 + LTR16B LTR ERVL 37 456 -8 189 121 0 0 chr3 149931704 149931737 -68105421 + (TC)n Simple_repeat Simple_repeat 2 34 0 342 0 0 0 chr3 149931760 149931798 -68105360 + (TG)n Simple_repeat Simple_repeat 2 39 0 21 36 0 0 chr3 149932826 149932854 -68104304 + AT_rich Low_complexity Low_complexity 1 28 0 636 160 46 11 chr3 149933040 149933300 -68103858 + L1MA4A LINE L1 5951 6280 -23 1326 250 58 68 chr3 149933747 149934491 -68102667 - L1ME LINE L1 -3681 2963 2253 7249 126 15 25 chr3 149934491 149935733 -68101425 - Tigger3b DNA MER2_type -1 1230 1 1326 250 58 68 chr3 149935733 149936024 -68101134 - L1ME LINE L1 -4391 2253 1961 1288 109 0 0 chr3 149936024 149936215 -68100943 - AluSg/x SINE Alu 0 308 118 1252 268 55 43 chr3 149936243 149937013 -68100145 - L1ME LINE L1 -4771 1873 1065 2345 83 0 17 chr3 149937013 149937315 -68099843 + AluY SINE Alu 1 297 -14 1252 268 55 43 chr3 149937315 149937368 -68099790 - L1ME LINE L1 -5579 1065 1014 226 387 62 59 chr3 149937676 149937932 -68099226 - L2 LINE L2 -185 3087 2831 265 294 118 24 chr3 149939890 149940060 -68097098 + L1MC4 LINE L1 7494 7679 -363 823 288 66 4 chr3 149940634 149940877 -68096281 + MIR SINE MIR 5 262 0 222 360 228 2 chr3 149940972 149941380 -68095778 + L2 LINE L2 2813 3312 -1 5479 94 11 21 chr3 149941736 149942152 -68095006 + L1MA1 LINE L1 5346 5765 -537 2112 137 28 28 chr3 149942152 149942516 -68094642 - THE1B LTR MaLR 0 364 1 5479 94 11 21 chr3 149942516 149942984 -68094174 + L1MA1 LINE L1 5765 6221 -81 2437 63 16 0 chr3 149943384 149943700 -68093458 + L1PA8 LINE L1 5836 6156 -16 4061 146 112 1 chr3 149944151 149944890 -68092268 - LTR12 LTR ERV1 -1 825 5 1897 159 55 88 chr3 149944906 149945523 -68091635 - pTR5 LTR ERV1 -1094 1344 748 284 345 35 0 chr3 149945523 149945636 -68091522 + L3 LINE CR1 431 547 -1030 392 212 44 44 chr3 149946425 149946538 -68090620 + L3 LINE CR1 638 750 -827 241 269 15 15 chr3 149946685 149946752 -68090406 + L2 LINE L2 3245 3311 -2 188 0 0 69 chr3 149947014 149947043 -68090115 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 7162 120 29 7 chr3 149947048 149947509 -68089649 - L1PA12 LINE L1 -25 6143 5693 2056 141 3 0 chr3 149947509 149947808 -68089350 - AluSx SINE Alu -12 300 1 7162 120 29 7 chr3 149947808 149949416 -68087742 - L1PA12 LINE L1 -475 5693 4027 5557 168 26 9 chr3 149949415 149950573 -68086585 + L1PA12 LINE L1 2838 4014 -2132 * 237 312 0 13 chr3 149950626 149950703 -68086455 + L3 LINE CR1 771 846 -731 345 332 47 28 chr3 149951102 149951316 -68085842 - HAL1 LINE L1 -216 2291 2074 2644 255 68 30 chr3 149951420 149952487 -68084671 - HAL1 LINE L1 -632 1875 769 430 235 117 12 chr3 149952889 149953051 -68084107 - HAL1 LINE L1 -2295 212 34 184 345 87 48 chr3 149953069 149953275 -68083883 + L2 LINE L2 2860 3073 -199 966 43 0 0 chr3 149954401 149954518 -68082640 + L1PA5 LINE L1 6029 6145 -9 434 70 14 0 chr3 149954868 149954939 -68082219 + (ATG)n Simple_repeat Simple_repeat 3 74 0 1868 224 48 2 chr3 149955170 149955653 -68081505 - L1MB7 LINE L1 -13 6171 5667 400 319 14 28 chr3 149955688 149955904 -68081254 + MLT1H LTR MaLR 45 257 -292 303 171 67 86 chr3 149955995 149956100 -68081058 + MLT1H LTR MaLR 431 533 -16 2451 88 3 0 chr3 149956235 149956575 -68080583 - THE1A LTR MaLR -14 341 1 8238 110 157 0 chr3 149956575 149957941 -68079217 - THE1A-int LTR MaLR 0 1580 1 2679 101 0 0 chr3 149957941 149958296 -68078862 - THE1A LTR MaLR 0 355 1 266 243 211 33 chr3 149958624 149958776 -68078382 - MIR SINE MIR -69 193 15 22 0 0 0 chr3 149959501 149959523 -68077635 + AT_rich Low_complexity Low_complexity 1 22 0 286 179 48 12 chr3 149959988 149960072 -68077086 - MLT1L LTR MaLR -10 605 519 13444 170 22 16 chr3 149960393 149962028 -68075130 - L1PB1 LINE L1 -2 6865 5242 1656 39 5 0 chr3 149962028 149962235 -68074923 - L1PA4 LINE L1 -3 6152 5945 13444 170 22 16 chr3 149962235 149964382 -68072776 - L1PB1 LINE L1 -1625 5242 3049 2453 101 0 0 chr3 149964382 149964689 -68072469 + AluSc SINE Alu 1 307 -2 13444 170 22 16 chr3 149964689 149964942 -68072216 - L1PB1 LINE L1 -3818 3049 2799 16002 115 32 18 chr3 149964945 149967650 -68069508 - L1PB1 LINE L1 -4120 2743 1 441 318 54 34 chr3 149967795 149968273 -68068885 - HAL1 LINE L1 -840 1667 1180 322 305 20 40 chr3 149968657 149968808 -68068350 - L1MEd LINE L1 -5040 1079 932 1068 268 77 22 chr3 149968827 149969193 -68067965 - MLT1G1 LTR MaLR -209 386 1 232 250 29 0 chr3 149969550 149969618 -68067540 - MIR SINE MIR -98 164 95 5133 128 34 8 chr3 149970501 149970989 -68066169 - L1MA8 LINE L1 -1 6290 5769 360 0 0 0 chr3 149970989 149971029 -68066129 + (TG)n Simple_repeat Simple_repeat 1 40 0 5133 128 34 8 chr3 149971029 149971403 -68065755 - L1MA8 LINE L1 -522 5769 5406 415 268 21 0 chr3 149972443 149972585 -68064573 - MER103 DNA DNA -2 164 20 464 315 106 40 chr3 149973504 149974072 -68063086 - MLT1L LTR MaLR -10 605 1 305 70 0 0 chr3 149974134 149974177 -68062981 + MADE1 DNA Mariner 38 80 0 538 286 51 0 chr3 149974446 149974624 -68062534 + MLT1J LTR MaLR 8 194 -317 284 213 106 57 chr3 149974682 149974823 -68062335 - MIR SINE MIR -3 259 112 183 80 0 0 chr3 149975650 149975675 -68061483 + (GGA)n Simple_repeat Simple_repeat 2 26 0 1030 287 54 33 chr3 149977243 149977806 -68059352 - MLT1L LTR MaLR -2 613 1 637 263 12 65 chr3 149979005 149979252 -68057906 + MIR SINE MIR 28 261 -1 659 239 124 54 chr3 149979990 149980304 -68056854 + HAL1 LINE L1 1877 2212 -295 1424 208 103 9 chr3 149980472 149980916 -68056242 + MLT1F LTR MaLR 1 542 0 372 260 50 0 chr3 149980940 149981040 -68056118 - MIR SINE MIR -108 154 50 38905 89 5 6 chr3 149981177 149987213 -68049945 + L1PA4 LINE L1 11 6155 0 2630 64 3 14 chr3 149987213 149987629 -68049529 + L1PA6 LINE L1 5814 6231 0 505 117 0 0 chr3 149987552 149987808 -68049350 + (GAAA)n Simple_repeat Simple_repeat 3 258 0 319 320 63 27 chr3 149988766 149988988 -68048170 + L2 LINE L2 2746 2975 -339 514 276 121 5 chr3 149989154 149989353 -68047805 - MIR SINE MIR -5 257 36 * 564 192 19 45 chr3 149989344 149989500 -68047658 + L2 LINE L2 3162 3313 0 2885 0 0 0 chr3 149989599 149989900 -68047258 + AluYa5 SINE Alu 1 301 -10 2179 38 15 0 chr3 149990412 149990675 -68046483 + L1PA5 LINE L1 5882 6148 -6 187 303 81 78 chr3 149991315 149991599 -68045559 - L2 LINE L2 -15 3257 2973 287 250 0 0 chr3 149993309 149993373 -68043785 + MIR SINE MIR 85 148 -114 204 40 0 0 chr3 150000509 150000534 -68036624 + (CCCTG)n Simple_repeat Simple_repeat 4 28 0 248 262 0 0 chr3 150004569 150004630 -68032528 + T-rich Low_complexity Low_complexity 1 61 0 494 263 56 0 chr3 150006834 150006994 -68030164 - MIR SINE MIR -13 249 81 21 0 0 0 chr3 150008027 150008048 -68029110 + AT_rich Low_complexity Low_complexity 1 21 0 308 188 82 12 chr3 150008329 150008414 -68028744 + MER113 DNA MER1_type? 29 119 -402 313 348 7 19 chr3 150008528 150008683 -68028475 - MIR3 SINE MIR -36 172 20 1208 6 25 6 chr3 150009262 150009419 -68027739 + (GAAA)n Simple_repeat Simple_repeat 2 161 0 302 288 106 23 chr3 150009650 150009782 -68027376 - MIR3 SINE MIR -64 144 2 534 285 15 91 chr3 150009950 150010224 -68026934 + MIR SINE MIR 7 259 -3 397 279 32 53 chr3 150011111 150011301 -68025857 + MIR SINE MIR 66 251 -11 2428 86 0 13 chr3 150011667 150011982 -68025176 - AluSq SINE Alu -2 311 1 1449 165 121 11 chr3 150012000 150012272 -68024886 - AluJo SINE Alu 0 302 1 226 313 22 60 chr3 150012284 150012418 -68024740 - MIR3 SINE MIR -14 194 66 612 284 94 10 chr3 150013159 150013360 -68023798 + L1MD2 LINE L1 5915 6132 -227 285 189 54 0 chr3 150013394 150013468 -68023690 - L1MA8 LINE L1 -1 6290 6213 305 287 111 23 chr3 150013969 150014185 -68022973 - MIR SINE MIR -8 254 20 883 155 22 33 chr3 150014707 150014888 -68022270 + MER5A DNA MER1_type 11 189 0 525 95 17 6 chr3 150014940 150015062 -68022096 + MER53 DNA DNA 2 189 0 373 192 27 0 chr3 150015085 150015158 -68022000 - MER5A DNA MER1_type -80 109 35 334 259 126 61 chr3 150015574 150015819 -68021339 - MIR SINE MIR -2 260 5 562 232 155 16 chr3 150016722 150016916 -68020242 - MIR SINE MIR -13 249 29 522 281 92 62 chr3 150017148 150017908 -68019250 + L1ME LINE L1 4872 5673 -489 5077 194 43 6 chr3 150017908 150018909 -68018249 + MER45B DNA AcHobo 2 1039 -1 522 281 92 62 chr3 150018909 150019056 -68018102 + L1ME LINE L1 5673 5814 -348 28 48 0 0 chr3 150019328 150019370 -68017788 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr3 150019450 150019471 -68017687 + AT_rich Low_complexity Low_complexity 1 21 0 28 79 0 0 chr3 150020624 150020687 -68016471 + AT_rich Low_complexity Low_complexity 1 63 0 222 118 0 0 chr3 150024857 150024891 -68012267 + (TTA)n Simple_repeat Simple_repeat 1 34 0 21 36 0 0 chr3 150025032 150025060 -68012098 + AT_rich Low_complexity Low_complexity 1 28 0 315 325 122 5 chr3 150025179 150025367 -68011791 - MIR SINE MIR -2 260 51 224 59 29 0 chr3 150025418 150025452 -68011706 + (TC)n Simple_repeat Simple_repeat 2 36 0 228 336 44 0 chr3 150025731 150025868 -68011290 + L2 LINE L2 1853 1995 -1319 723 182 7 7 chr3 150025920 150026068 -68011090 - MIR SINE MIR -33 229 82 751 222 92 128 chr3 150027006 150028066 -68009092 + L1MC5 LINE L1 6814 7705 -256 * 1738 241 116 13 chr3 150028064 150028687 -68008471 - HAL1b LINE L1 -78 1270 584 358 309 130 39 chr3 150028843 150029073 -68008085 + MIR SINE MIR 8 258 -4 302 265 179 12 chr3 150029762 150029924 -68007234 - L2 LINE L2 -5 3308 3120 2416 232 114 41 chr3 150029963 150030718 -68006440 - MER21B LTR ERV1 -11 852 43 362 216 14 14 chr3 150030718 150030792 -68006366 - MER21B LTR ERV1 -771 92 19 307 213 43 43 chr3 150030790 150030884 -68006274 - MER21B LTR ERV1 -757 106 13 * 566 318 99 83 chr3 150030936 150031970 -68005188 - L2 LINE L2 -220 3052 2009 847 222 85 32 chr3 150031977 150032425 -68004733 - LTR33 LTR ERVL -19 504 1 213 294 165 5 chr3 150032446 150032664 -68004494 - L2 LINE L2 -1351 1963 1711 358 279 14 50 chr3 150033642 150033697 -68003461 + LTR33 LTR ERVL 3 58 -463 1878 210 86 25 chr3 150033697 150034173 -68002985 + MLT1D LTR MaLR 1 505 0 358 279 14 50 chr3 150034173 150034257 -68002901 + LTR33 LTR ERVL 58 137 -384 744 286 46 0 chr3 150034313 150034509 -68002649 - MER63A DNA MER1_type -4 206 2 512 59 29 0 chr3 150035127 150035195 -68001963 + L1PB2 LINE L1 5779 5848 -303 862 100 0 0 chr3 150035195 150035305 -68001853 - AluSq/x SINE Alu -202 110 1 4393 160 67 6 chr3 150035305 150036093 -68001065 + L1PA8 LINE L1 5336 6171 -1 322 272 0 132 chr3 150036130 150036266 -68000892 - L2 LINE L2 -5 3267 3150 203 275 50 12 chr3 150036302 150036382 -68000776 + MIR SINE MIR 175 257 -5 466 216 56 16 chr3 150036514 150036639 -68000519 - L1ME3 LINE L1 -13 6149 6020 2743 10 0 0 chr3 150037400 150037696 -67999462 - AluYa5 SINE Alu -15 296 1 238 104 229 0 chr3 150038139 150038187 -67998971 - L2 LINE L2 0 3272 3214 1099 299 75 15 chr3 150039016 150039650 -67997508 + L2 LINE L2 2632 3312 -1 733 228 9 141 chr3 150039821 150039910 -67997248 - HAL1 LINE L1 -1 2506 2407 775 195 0 0 chr3 150039910 150040060 -67997098 + FLAM_A SINE Alu 1 150 0 733 228 9 141 chr3 150040060 150040393 -67996765 - HAL1 LINE L1 -100 2407 2137 2085 162 42 21 chr3 150040933 150041315 -67995843 + MLT1B LTR MaLR 1 390 0 476 204 23 8 chr3 150041422 150041554 -67995604 - HAL1 LINE L1 -138 2369 2236 1270 265 163 33 chr3 150042212 150043069 -67994089 - HAL1 LINE L1 -5 2502 1534 1443 144 62 31 chr3 150043070 150043327 -67993831 - AluSx SINE Alu -14 298 34 449 267 31 31 chr3 150043328 150043523 -67993635 - HAL1 LINE L1 -967 1540 1346 226 244 0 81 chr3 150043877 150043963 -67993195 - HAL1 LINE L1 -2329 178 100 1273 178 49 30 chr3 150044078 150044342 -67992816 + L1MB5 LINE L1 5906 6174 0 1598 174 0 11 chr3 150044544 150044825 -67992333 - AluJo SINE Alu -28 284 7 699 297 135 0 chr3 150045380 150045602 -67991556 - MIR SINE MIR -6 256 5 323 233 11 0 chr3 150046116 150046206 -67990952 + L2 LINE L2 2174 2264 -1050 802 240 189 42 chr3 150046649 150047019 -67990139 + Charlie7 DNA MER1_type 87 401 -2211 2342 98 0 0 chr3 150047019 150047316 -67989842 + AluSx SINE Alu 1 297 -15 802 240 189 42 chr3 150047316 150047553 -67989605 + Charlie7 DNA MER1_type 401 861 -1751 2058 122 3 23 chr3 150047731 150048034 -67989124 + AluSq SINE Alu 1 297 -16 533 290 48 30 chr3 150048189 150048523 -67988635 + L1ME LINE L1 3662 4001 -2145 205 333 0 25 chr3 150048525 150048606 -67988552 + (CATA)n Simple_repeat Simple_repeat 3 81 0 3359 92 29 4 chr3 150048981 150049436 -67987722 + L1PA11 LINE L1 5709 6174 0 505 272 104 59 chr3 150049446 150050035 -67987123 + L1ME LINE L1 4443 5046 -1100 671 235 23 77 chr3 150050147 150050407 -67986751 + L1ME LINE L1 5574 5819 -302 1148 115 0 23 chr3 150050408 150050582 -67986576 + L1PB1 LINE L1 5981 6150 -1 354 299 30 2 chr3 150051340 150051485 -67985673 + MIR SINE MIR 34 142 -66 220 284 40 0 chr3 150051688 150051762 -67985396 + CT-rich Low_complexity Low_complexity 6 82 0 256 250 16 0 chr3 150052059 150052123 -67985035 - MLT1J2 LTR MaLR -120 330 266 180 247 258 0 chr3 150052480 150052573 -67984585 - L2 LINE L2 -6 3266 3150 2084 123 0 3 chr3 150052875 150053180 -67983978 + AluSx SINE Alu 1 304 0 874 209 29 6 chr3 150053252 150053424 -67983734 + MER5A DNA MER1_type 1 176 -13 498 251 12 74 chr3 150053635 150053715 -67983443 - MER5B DNA MER1_type -25 153 86 2910 133 19 19 chr3 150053715 150054142 -67983016 + MSTC LTR MaLR 1 427 -1 498 251 12 74 chr3 150054142 150054224 -67982934 - MER5B DNA MER1_type -92 86 1 450 0 0 0 chr3 150054927 150054977 -67982181 + (CA)n Simple_repeat Simple_repeat 1 50 0 476 265 108 12 chr3 150055261 150055427 -67981731 + MIR SINE MIR 81 262 0 202 323 15 0 chr3 150055558 150055623 -67981535 + L2 LINE L2 3247 3312 -1 954 255 58 0 chr3 150056157 150056400 -67980758 - MIR SINE MIR 0 262 6 366 143 39 39 chr3 150056683 150056760 -67980398 + MIR SINE MIR 92 168 -94 495 336 64 14 chr3 150057077 150057360 -67979798 + ERVL LTR ERVL 320 616 -5148 445 310 43 43 chr3 150057481 150057713 -67979445 + ERVL LTR ERVL 814 1045 -4719 6460 25 0 6 chr3 150058094 150058813 -67978345 - L1PA4 LINE L1 0 6155 5441 5592 39 0 0 chr3 150058822 150059494 -67977664 + L1P LINE L1 4700 5371 -775 332 273 62 8 chr3 150059857 150059985 -67977173 + LTR33A LTR ERVL 382 516 -7 2645 167 19 5 chr3 150060160 150060580 -67976578 - MSTB LTR MaLR 0 426 1 1042 245 207 8 chr3 150060688 150061269 -67975889 + LTR50 LTR ERVL 6 795 0 23 0 0 53 chr3 150061598 150061615 -67975543 + AT_rich Low_complexity Low_complexity 1 17 -19 2050 229 80 14 chr3 150061615 150062130 -67975028 - MLT1H LTR MaLR 0 549 1 23 0 0 53 chr3 150062130 150062150 -67975008 + AT_rich Low_complexity Low_complexity 17 36 0 339 259 15 30 chr3 150064550 150064681 -67972477 - LTR16A1 LTR ERVL -4 453 325 342 295 81 57 chr3 150064686 150064896 -67972262 - LTR16C LTR ERVL -275 216 2 330 179 28 159 chr3 150065098 150065243 -67971915 - MIR SINE MIR 0 262 137 225 108 0 0 chr3 150065349 150065386 -67971772 + (CA)n Simple_repeat Simple_repeat 2 38 0 287 295 26 0 chr3 150066519 150066597 -67970561 - L3 LINE CR1 -3 1574 1495 2073 174 12 61 chr3 150066824 150067095 -67970063 + MLT1B LTR MaLR 3 249 -141 2748 152 23 28 chr3 150067095 150067523 -67969635 + MSTB LTR MaLR 1 426 0 2073 174 12 61 chr3 150067523 150067659 -67969499 + MLT1B LTR MaLR 249 390 0 319 299 13 0 chr3 150067834 150067911 -67969247 - L2 LINE L2 -4 3268 3191 217 310 46 86 chr3 150068036 150068135 -67969023 - L2 LINE L2 -400 2914 2825 2498 118 31 11 chr3 150068135 150068492 -67968666 + THE1B LTR MaLR 1 364 0 217 310 46 86 chr3 150068492 150068589 -67968569 - L2 LINE L2 -489 2825 2726 1865 121 73 0 chr3 150068637 150068910 -67968248 - AluSg1 SINE Alu -16 293 1 473 206 22 0 chr3 150069171 150069263 -67967895 - Tigger5 DNA MER2_type 0 2323 2230 284 122 0 0 chr3 150069268 150069309 -67967849 - Tigger5 DNA MER2_type -2269 54 14 485 284 37 5 chr3 150069412 150069602 -67967556 - L1MC4a LINE L1 -1939 5869 5674 364 312 43 22 chr3 150069602 150069740 -67967418 - MIR SINE MIR -119 143 3 983 230 56 31 chr3 150069758 150070150 -67967008 - L1MEc LINE L1 -5041 1355 954 1116 193 116 64 chr3 150070157 150070242 -67966916 + MER2 DNA MER2_type 1 80 -265 2277 147 0 35 chr3 150070242 150070590 -67966568 - MER1B DNA MER1_type -1 336 1 1116 193 116 64 chr3 150070590 150070831 -67966327 + MER2 DNA MER2_type 80 344 -1 1973 251 31 7 chr3 150070831 150071549 -67965609 - L1MEc LINE L1 -5453 943 160 1687 184 59 20 chr3 150071546 150071904 -67965254 + L1MC3 LINE L1 7397 7768 -17 * 412 165 41 21 chr3 150071913 150072010 -67965148 + MER97c DNA MER1_type? 81 179 -911 554 264 68 6 chr3 150072356 150072519 -67964639 + MER5B DNA MER1_type 3 175 -3 232 337 23 0 chr3 150072526 150072612 -67964546 + MER5A DNA MER1_type 69 156 -33 2318 41 41 7 chr3 150072828 150073118 -67964040 + AluY SINE Alu 1 300 -11 265 319 0 0 chr3 150073272 150073344 -67963814 - L3 LINE CR1 -126 1451 1380 1962 148 12 102 chr3 150073463 150073874 -67963284 + MLT1A2 LTR MaLR 1 374 0 247 192 0 41 chr3 150074375 150074448 -67962710 + T-rich Low_complexity Low_complexity 1 70 0 217 286 0 16 chr3 150075414 150075477 -67961681 + CT-rich Low_complexity Low_complexity 5 66 0 246 256 78 35 chr3 150076897 150077115 -67960043 - L1ME4a LINE L1 -106 6015 5764 198 91 0 0 chr3 150077430 150077463 -67959695 + (TC)n Simple_repeat Simple_repeat 1 33 0 264 277 170 0 chr3 150077529 150077623 -67959535 + L2 LINE L2 3196 3305 -8 355 361 53 50 chr3 150078531 150078869 -67958289 + L2 LINE L2 2914 3252 -20 23 0 0 0 chr3 150079882 150079905 -67957253 + AT_rich Low_complexity Low_complexity 1 23 0 194 417 33 17 chr3 150080473 150080593 -67956565 - L2 LINE L2 -76 3196 3075 441 318 48 34 chr3 150080853 150081096 -67956062 - MIR SINE MIR -6 256 3 1959 156 37 67 chr3 150081550 150082031 -67955127 + L1MB8 LINE L1 5712 6178 0 321 89 0 0 chr3 150082620 150082665 -67954493 + (TG)n Simple_repeat Simple_repeat 2 46 0 1484 238 149 16 chr3 150083798 150084240 -67952918 - MLT1H1 LTR MaLR -19 536 36 26 0 0 0 chr3 150084303 150084329 -67952829 + AT_rich Low_complexity Low_complexity 1 26 0 195 42 0 0 chr3 150086079 150086103 -67951055 + (TTCA)n Simple_repeat Simple_repeat 2 25 0 1953 176 33 88 chr3 150086348 150086837 -67950321 - MLT1C LTR MaLR 0 467 6 3933 57 0 4 chr3 150087105 150087575 -67949583 - L1PA7 LINE L1 -3 6151 5684 180 0 114 0 chr3 150088548 150088583 -67948575 + T-rich Low_complexity Low_complexity 2 40 0 267 93 0 0 chr3 150089107 150089150 -67948008 + (TTGG)n Simple_repeat Simple_repeat 2 44 0 2433 96 0 0 chr3 150089660 150089972 -67947186 - AluSq SINE Alu -1 312 1 1936 167 45 28 chr3 150090965 150091324 -67945834 + MLT1A1 LTR MaLR 1 365 0 295 290 112 34 chr3 150092480 150092749 -67944409 + L2 LINE L2 2845 3134 -179 351 160 34 45 chr3 150093012 150093110 -67944048 - MIR SINE MIR -48 160 64 2509 202 94 88 chr3 150093290 150094111 -67943047 + LTR1B LTR ERV1 1 826 0 1062 179 5 20 chr3 150095745 150095941 -67941217 - MLT1A1 LTR MaLR -172 193 1 6005 200 135 59 chr3 150095945 150096348 -67940810 - MLT1A1-int LTR MaLR -4 1731 1360 5328 138 9 15 chr3 150096348 150097136 -67940022 + LTR39 LTR ERV1 1 783 0 6005 200 135 59 chr3 150097136 150098340 -67938818 - MLT1A1-int LTR MaLR -375 1360 2 296 204 0 0 chr3 150098342 150098391 -67938767 - MLT1A1 LTR MaLR 0 365 317 6680 162 37 5 chr3 150098463 150100509 -67936649 + L1M1 LINE L1 13 2247 -5318 205 387 62 59 chr3 150101432 150101688 -67935470 + L2 LINE L2 2831 3087 -185 1475 284 62 52 chr3 150101996 150102049 -67935109 + L1ME LINE L1 1014 1065 -5477 2355 70 3 20 chr3 150102049 150102351 -67934807 - AluY SINE Alu -14 297 1 1475 284 62 52 chr3 150102351 150103121 -67934037 + L1ME LINE L1 1065 1674 -4868 1286 109 0 0 chr3 150103149 150103340 -67933818 + AluSg/x SINE Alu 118 308 0 1671 248 59 69 chr3 150103340 150103631 -67933527 + L1ME LINE L1 1961 2253 -4391 7890 126 15 25 chr3 150103631 150104873 -67932285 + Tigger3b DNA MER2_type 1 1230 -1 1671 248 59 69 chr3 150104873 150105617 -67931541 + L1ME LINE L1 2253 2963 -3681 701 160 46 11 chr3 150106064 150106324 -67930834 - L1MA4A LINE L1 -23 6280 5951 21 36 0 0 chr3 150106510 150106538 -67930620 + AT_rich Low_complexity Low_complexity 1 28 0 342 0 0 0 chr3 150107566 150107604 -67929554 + (CA)n Simple_repeat Simple_repeat 2 39 0 189 121 0 0 chr3 150107627 150107660 -67929498 + (GA)n Simple_repeat Simple_repeat 2 34 0 890 299 100 26 chr3 150107839 150108230 -67928928 - LTR16B LTR ERVL -8 456 37 369 0 0 0 chr3 150108860 150108901 -67928257 + (TG)n Simple_repeat Simple_repeat 2 42 0 1015 269 42 21 chr3 150108984 150109405 -67927753 - L1M4 LINE L1 -1304 4842 4414 880 295 65 29 chr3 150109419 150109999 -67927159 - L1M4 LINE L1 -2451 3695 3095 269 261 0 0 chr3 150110029 150110098 -67927060 - L1M4 LINE L1 -3115 3031 2963 * 2415 170 92 17 chr3 150110097 150110841 -67926317 - L1MD1 LINE L1 0 6242 5415 2243 70 0 11 chr3 150110842 150111148 -67926010 + AluY SINE Alu 1 303 0 874 209 29 6 chr3 150111220 150111392 -67925766 + MER5A DNA MER1_type 1 176 -13 498 251 12 74 chr3 150111603 150111683 -67925475 - MER5B DNA MER1_type -25 153 86 2910 133 19 19 chr3 150111683 150112110 -67925048 + MSTC LTR MaLR 1 427 -1 498 251 12 74 chr3 150112110 150112192 -67924966 - MER5B DNA MER1_type -92 86 1 432 0 0 0 chr3 150112897 150112945 -67924213 + (CA)n Simple_repeat Simple_repeat 1 48 0 476 265 108 12 chr3 150113229 150113395 -67923763 + MIR SINE MIR 81 262 0 202 323 15 0 chr3 150113526 150113591 -67923567 + L2 LINE L2 3247 3312 -1 954 255 58 0 chr3 150114125 150114368 -67922790 - MIR SINE MIR 0 262 6 366 143 39 39 chr3 150114651 150114728 -67922430 + MIR SINE MIR 92 168 -94 495 336 64 14 chr3 150115045 150115328 -67921830 + ERVL LTR ERVL 320 616 -5148 445 310 43 43 chr3 150115449 150115681 -67921477 + ERVL LTR ERVL 814 1045 -4719 3374 54 32 3 chr3 150116126 150116618 -67920540 + L1PA8A LINE L1 5187 5689 -442 3800 205 21 9 chr3 150116633 150117437 -67919721 + L1P LINE L1 11 824 -5322 1212 303 25 56 chr3 150118160 150118675 -67918483 + LTR33A LTR ERVL 1 499 -24 392 212 68 41 chr3 150118722 150118868 -67918290 - MIR SINE MIR 0 262 113 1499 183 29 88 chr3 150119273 150119682 -67917476 - MLT1B LTR MaLR -1 389 5 1614 82 9 27 chr3 150120142 150120361 -67916797 + L1PA8 LINE L1 5951 6165 -7 252 341 94 26 chr3 150120362 150120670 -67916488 - L2 LINE L2 -550 2764 2436 475 211 11 0 chr3 150171828 150171918 -67865240 - MER81 DNA DNA 0 114 24 25 0 0 28 chr3 150172038 150172049 -67865109 + AT_rich Low_complexity Low_complexity 1 11 -24 1684 167 7 14 chr3 150172049 150172337 -67864821 + AluJb SINE Alu 1 286 -26 25 0 0 28 chr3 150172337 150172361 -67864797 + AT_rich Low_complexity Low_complexity 11 35 0 27 73 0 0 chr3 150172527 150172582 -67864576 + GC_rich Low_complexity Low_complexity 1 55 0 424 240 13 13 chr3 150172631 150172785 -67864373 + FRAM SINE Alu 10 163 -13 510 227 55 0 chr3 150172951 150173085 -67864073 - FLAM_A SINE Alu 0 140 1 3332 172 13 5 chr3 150173935 150174551 -67862607 + L1MA6 LINE L1 5674 6294 -6 390 374 0 0 chr3 150174586 150174701 -67862457 - L1MDa LINE L1 -5848 692 578 1900 221 77 19 chr3 150174710 150175432 -67861726 - L1MEc LINE L1 -3307 2908 2184 6775 75 37 0 chr3 150175441 150176867 -67860291 - L1PA7 LINE L1 0 6154 4684 225 65 0 0 chr3 150176867 150176898 -67860260 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6775 75 37 0 chr3 150176898 150177079 -67860079 - L1PA7 LINE L1 -1470 4684 4511 9925 88 2 0 chr3 150177079 150178473 -67858685 + L1P LINE L1 2829 4225 -1921 441 217 83 25 chr3 150178596 150178753 -67858405 - L1MEc LINE L1 -4413 1983 1818 879 171 55 0 chr3 150178775 150178939 -67858219 - L1MC1 LINE L1 -18 6315 6143 372 299 52 15 chr3 150178939 150179073 -67858085 - L1MEc LINE L1 -5138 1067 929 28 71 0 0 chr3 150179199 150179255 -67857903 + AT_rich Low_complexity Low_complexity 1 56 0 281 372 9 9 chr3 150179450 150179563 -67857595 - L1MEc LINE L1 -5497 708 596 270 227 43 71 chr3 150179597 150179738 -67857420 - L1MEc LINE L1 -5981 224 88 377 315 61 28 chr3 150179742 150180124 -67857034 + L1MC4a LINE L1 5525 5926 -1882 399 293 30 100 chr3 150180257 150180557 -67856601 - L1M4 LINE L1 -2161 3985 3707 354 267 68 63 chr3 150180900 150181091 -67856067 - L1ME3 LINE L1 -19 6143 5952 426 20 0 0 chr3 150181694 150181745 -67855413 + (TG)n Simple_repeat Simple_repeat 2 52 0 256 274 47 19 chr3 150183218 150183324 -67853834 + L2 LINE L2 2420 2528 -786 203 174 0 65 chr3 150184347 150184393 -67852765 - L3 LINE CR1 -5 1572 1530 275 280 37 0 chr3 150184661 150184768 -67852390 - L1M4 LINE L1 -1299 4847 4737 611 316 71 28 chr3 150184912 150185409 -67851749 - L1M4 LINE L1 -1605 4541 4024 196 336 77 35 chr3 150185411 150185554 -67851604 - L2 LINE L2 -1069 2245 2097 608 167 0 0 chr3 150185714 150185804 -67851354 + AluS SINE Alu 3 92 -220 221 188 21 0 chr3 150185872 150185920 -67851238 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 353 330 18 59 chr3 150186052 150186273 -67850885 + L1ME LINE L1 5549 5760 -361 3932 196 46 7 chr3 150186483 150187392 -67849766 + L1PA13 LINE L1 3018 3962 -2184 39650 63 9 2 chr3 150187392 150193048 -67844110 + L1PA5 LINE L1 1 5688 -466 2399 38 41 0 chr3 150193048 150193339 -67843819 + AluY SINE Alu 1 303 -8 39650 63 9 2 chr3 150193339 150193802 -67843356 + L1PA5 LINE L1 5688 6146 -8 7419 153 16 3 chr3 150193825 150195429 -67841729 + L1PA13 LINE L1 3950 5567 -594 2426 10 0 0 chr3 150195437 150195725 -67841433 + L1HS LINE L1 5868 6155 0 3764 138 8 2 chr3 150195751 150196362 -67840796 + L1PA13 LINE L1 5538 6152 -11 857 262 94 30 chr3 150196939 150197405 -67839753 + L1MC/D LINE L1 5254 5749 -2059 30 27 0 0 chr3 150197640 150197677 -67839481 + AT_rich Low_complexity Low_complexity 1 37 0 24418 134 13 18 chr3 150197747 150199012 -67838146 + L1PA8A LINE L1 4 1274 -5172 183 100 0 0 chr3 150199012 150199042 -67838116 + (CAA)n Simple_repeat Simple_repeat 1 30 0 24418 134 13 18 chr3 150199042 150204202 -67832956 + L1PA8A LINE L1 1274 6439 -7 1325 175 6 9 chr3 150204202 150204517 -67832641 + Charlie5 DNA MER1_type 2217 2530 -82 233 278 93 60 chr3 150204587 150204803 -67832355 + L1M4 LINE L1 4715 4937 -1209 335 285 40 50 chr3 150204810 150205010 -67832148 - L1ME3A LINE L1 -8 6162 5965 339 217 87 0 chr3 150205114 150205206 -67831952 - L1ME3A LINE L1 -256 5914 5815 2348 221 38 35 chr3 150205218 150205852 -67831306 - L1ME1 LINE L1 -5 6161 5526 21 36 0 0 chr3 150205883 150205911 -67831247 + AT_rich Low_complexity Low_complexity 1 28 0 668 198 50 3 chr3 150205915 150205995 -67831163 - MER33 DNA MER1_type -2360 225 150 1756 159 43 0 chr3 150205995 150206272 -67830886 - AluJb SINE Alu -23 289 1 668 198 50 3 chr3 150206272 150206414 -67830744 - MER33 DNA MER1_type -2435 150 1 252 0 0 0 chr3 150206662 150206690 -67830468 + (TTA)n Simple_repeat Simple_repeat 3 30 0 6756 69 0 0 chr3 150206690 150207879 -67829279 - L1PA7 LINE L1 -18 6136 4950 2819 98 2 0 chr3 150207879 150208307 -67828851 - L1P LINE L1 -1106 5040 4612 1662 214 113 7 chr3 150208303 150208987 -67828171 - L1ME1 LINE L1 -74 6092 4855 * 785 196 6 6 chr3 150209011 150209179 -67827979 + MLT1A2 LTR MaLR 207 374 0 579 141 0 0 chr3 150209180 150209272 -67827886 + MLT1A2-int LTR MaLR 2 93 -1278 180 0 0 0 chr3 150212126 150212146 -67825012 + (ATG)n Simple_repeat Simple_repeat 1 20 0 491 294 72 17 chr3 150212156 150212336 -67824822 - MIR SINE MIR -10 252 63 1143 191 13 4 chr3 150213405 150213630 -67823528 + L1PA15 LINE L1 5939 6165 0 506 218 170 74 chr3 150214100 150214329 -67822829 - MIR SINE MIR -10 252 2 23 0 0 0 chr3 150215888 150215911 -67821247 + AT_rich Low_complexity Low_complexity 1 23 0 242 325 32 32 chr3 150216929 150217052 -67820106 - L3b LINE CR1 -57 1526 1404 320 243 98 52 chr3 150217059 150217232 -67819926 + L2 LINE L2 2923 3103 -169 200 235 59 29 chr3 150217364 150217432 -67819726 - L3b LINE CR1 -183 1400 1331 413 312 113 34 chr3 150219122 150219449 -67817709 + L2 LINE L2 2384 2736 -578 274 114 29 14 chr3 150219470 150219540 -67817618 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 1831 141 10 26 chr3 150220483 150220795 -67816363 + AluSx SINE Alu 6 312 0 821 150 0 0 chr3 150220811 150220938 -67816220 + FRAM SINE Alu 21 147 -29 687 48 39 0 chr3 150220938 150221353 -67815805 + (GAAA)n Simple_repeat Simple_repeat 1 431 0 197 321 94 0 chr3 150222055 150222161 -67814997 - L2 LINE L2 -157 3115 3000 242 77 0 0 chr3 150222275 150222314 -67814844 - Alu SINE Alu -4 297 259 2269 121 3 0 chr3 150222314 150222619 -67814539 - AluSx SINE Alu -6 306 1 2236 112 0 0 chr3 150223503 150223799 -67813359 - AluSg SINE Alu -14 296 1 1828 178 7 0 chr3 150223802 150224094 -67813064 - AluJo SINE Alu -18 294 1 6584 85 12 7 chr3 150225782 150227385 -67809773 - L1PA8 LINE L1 -2 6170 4563 241 308 81 54 chr3 150227532 150227717 -67809441 + L2 LINE L2 2997 3186 -86 245 298 7 13 chr3 150227772 150227860 -67809298 + GA-rich Low_complexity Low_complexity 1 87 0 519 331 111 11 chr3 150228408 150228767 -67808391 - LTR16A LTR ERVL 0 450 56 789 178 0 13 chr3 150228905 150229062 -67808096 + MLT1B LTR MaLR 5 159 -231 1021 90 8 0 chr3 150229063 150229196 -67807962 - AluSp/q SINE Alu -19 294 161 907 168 5 32 chr3 150229196 150229386 -67807772 + MLT1B LTR MaLR 175 359 -31 1162 203 79 3 chr3 150229410 150229701 -67807457 - MER2 DNA MER2_type -10 335 23 4396 313 59 35 chr3 150229833 150232702 -67804456 - MERVL LTR ERVL -201 5284 2486 1212 206 18 14 chr3 150232702 150232925 -67804233 + MER58A DNA MER1_type 1 224 0 4396 313 59 35 chr3 150232925 150233900 -67803258 - MERVL LTR ERVL -2999 2486 1536 1415 108 0 0 chr3 150233900 150234085 -67803073 - L1PA15 LINE L1 0 6165 5981 4396 313 59 35 chr3 150234085 150235334 -67801824 - MERVL LTR ERVL -3949 1536 1 249 295 133 0 chr3 150235336 150235441 -67801717 - LTR16A LTR ERVL -2 448 330 437 321 81 19 chr3 150235459 150235668 -67801490 - LTR16A LTR ERVL -221 229 8 1131 265 35 91 chr3 150235699 150236164 -67800994 + MLT1J LTR MaLR 27 464 -47 2190 105 7 7 chr3 150236164 150236493 -67800665 - AluSx SINE Alu 0 329 1 1131 265 35 91 chr3 150236493 150236539 -67800619 + MLT1J LTR MaLR 464 511 0 204 182 0 0 chr3 150237004 150237048 -67800110 + T-rich Low_complexity Low_complexity 1 44 0 345 304 0 0 chr3 150237161 150237253 -67799905 + MIR SINE MIR 54 145 -63 316 259 99 30 chr3 150237898 150238029 -67799129 - MIR SINE MIR -2 260 121 331 301 11 0 chr3 150238030 150238123 -67799035 + MLT1I LTR MaLR 50 143 -266 502 245 162 9 chr3 150238123 150238352 -67798806 + MIR SINE MIR 6 250 -12 2357 104 0 10 chr3 150238380 150238688 -67798470 - AluSg SINE Alu -5 305 1 351 269 208 0 chr3 150239926 150240056 -67797102 - MIR SINE MIR -41 221 65 849 250 34 34 chr3 150240355 150240591 -67796567 - MIR SINE MIR -19 243 8 566 109 11 11 chr3 150240710 150240802 -67796356 - MLT1D LTR MaLR 0 505 414 1294 190 139 44 chr3 150241071 150241460 -67795698 - MLT1E2 LTR MaLR -109 517 92 457 311 41 0 chr3 150241589 150241711 -67795447 + L2 LINE L2 3143 3269 -3 2109 107 24 0 chr3 150242184 150242475 -67794683 + AluSg SINE Alu 13 310 0 1834 126 5 1 chr3 150242492 150242512 -67794646 + L1MDa LINE L1 2532 2550 -3990 18920 138 9 6 chr3 150242512 150246228 -67790930 - L1PA10 LINE L1 -5 6163 2435 1834 126 5 1 chr3 150246228 150246494 -67790664 + L1PA10 LINE L1 2550 2823 -3717 1164 260 58 58 chr3 150246642 150247104 -67790054 + MLT1G LTR MaLR 84 545 -45 239 152 33 57 chr3 150247509 150247700 -67789458 + (TTATA)n Simple_repeat Simple_repeat 1 186 0 292 256 21 81 chr3 150247705 150247990 -67789168 + L1ME LINE L1 2752 3019 -3127 676 220 69 57 chr3 150247994 150249130 -67788028 - L1MC5 LINE L1 -36 7925 6719 854 260 121 101 chr3 150249193 150250734 -67786424 + L1ME LINE L1 3132 4704 -1442 256 341 43 37 chr3 150250885 150251049 -67786109 + MIR SINE MIR 56 220 -42 2877 159 4 13 chr3 150254179 150254643 -67782515 - MER66B LTR ERV1 0 486 27 2371 222 103 47 chr3 150254869 150255658 -67781500 + MER97a DNA MER1_type? 60 892 -2 311 301 87 58 chr3 150256615 150257027 -67780131 + L1ME LINE L1 5352 5775 -346 4517 79 2 3 chr3 150257068 150257636 -67779522 - L1PB1 LINE L1 0 6151 5585 1134 131 0 2 chr3 150258145 150258382 -67778776 - AluSc SINE Alu -27 282 2 197 43 0 0 chr3 150258400 150258423 -67778735 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 7982 23 0 0 chr3 150258427 150259707 -67777451 - L1PA3 LINE L1 -3 6152 4876 9350 29 0 1 chr3 150259707 150260794 -67776364 + L1PA3 LINE L1 3788 4873 -1273 485 230 25 62 chr3 150261424 150261585 -67775573 + MER5B DNA MER1_type 17 171 -7 261 265 133 54 chr3 150261694 150261894 -67775264 - MIR SINE MIR -36 226 6 293 133 33 33 chr3 150262229 150262289 -67774869 + MER5B DNA MER1_type 11 70 -108 1256 178 83 0 chr3 150262310 150262599 -67774559 + MER33 DNA MER1_type 1 302 -22 819 144 14 111 chr3 150262622 150262830 -67774328 + MER53 DNA DNA 2 189 0 468 248 168 12 chr3 150262864 150263025 -67774133 + MER5A DNA MER1_type 4 189 0 260 284 12 12 chr3 150263196 150263277 -67773881 + (TGAA)n Simple_repeat Simple_repeat 1 81 0 375 259 16 67 chr3 150263807 150263933 -67773225 - L1MC4a LINE L1 -297 5824 5820 1758 108 98 41 chr3 150263933 150264228 -67772930 - AluSx SINE Alu 0 312 1 375 259 16 67 chr3 150264228 150264340 -67772818 - L1MC4a LINE L1 -301 5820 5704 537 288 22 105 chr3 150264355 150264668 -67772490 + L2 LINE L2 2967 3253 -19 231 204 0 0 chr3 150264675 150264724 -67772434 + GA-rich Low_complexity Low_complexity 1 49 0 743 316 88 54 chr3 150264896 150265820 -67771338 + L2 LINE L2 1569 2523 -791 528 216 18 0 chr3 150266155 150266266 -67770892 + LTR67 LTR ERVL 445 557 0 696 307 81 45 chr3 150266266 150266812 -67770346 + L2 LINE L2 2524 3078 -194 7368 119 14 17 chr3 150266874 150268567 -67768591 - L1MA2 LINE L1 0 6304 4610 2107 130 0 0 chr3 150268567 150268882 -67768276 - AluSx SINE Alu 0 315 1 7368 119 14 17 chr3 150268882 150269136 -67768022 - L1MA2 LINE L1 -1694 4610 4357 * 8613 186 11 7 chr3 150269135 150270646 -67766512 - L1M1 LINE L1 -5854 1711 195 43157 52 9 0 chr3 150270647 150276737 -67760421 + L1PA5 LINE L1 2 6145 -9 243 88 0 0 chr3 150276737 150276771 -67760387 + (TA)n Simple_repeat Simple_repeat 1 34 0 278 179 95 24 chr3 150276776 150276860 -67760298 - L1MC4 LINE L1 -1339 6703 6614 258 234 0 43 chr3 150276780 150276874 -67760284 + L1MC4 LINE L1 6614 6703 -1339 * 1117 148 20 5 chr3 150276888 150277084 -67760074 - L1M1 LINE L1 -7358 207 9 326 302 95 8 chr3 150277093 150277219 -67759939 + L2 LINE L2 3136 3272 0 635 234 12 42 chr3 150277249 150277416 -67759742 + MIR SINE MIR 101 262 0 499 218 171 20 chr3 150278160 150278412 -67758746 + L1ME4a LINE L1 5725 6014 -107 2017 132 9 47 chr3 150278474 150278816 -67758342 - L1MC1 LINE L1 -11 6322 5994 28 0 0 26 chr3 150279308 150279334 -67757824 + AT_rich Low_complexity Low_complexity 1 27 -11 1760 163 3 14 chr3 150279334 150279623 -67757535 - AluJb SINE Alu -26 286 1 28 0 0 26 chr3 150279623 150279635 -67757523 + AT_rich Low_complexity Low_complexity 27 38 0 469 222 11 0 chr3 150279754 150279844 -67757314 + MER81 DNA DNA 24 114 0 4052 154 73 19 chr3 150280591 150281428 -67755730 - Tigger3(Golem) DNA MER2_type -1 3028 2147 3392 150 64 13 chr3 150281636 150282340 -67754818 - Tigger3b DNA MER2_type -492 740 1 318 154 41 41 chr3 150282965 150283088 -67754070 + (TA)n Simple_repeat Simple_repeat 2 124 0 6162 173 17 17 chr3 150284462 150286088 -67751070 - L1M2 LINE L1 -563 5749 4124 569 208 42 0 chr3 150286078 150286222 -67750936 - L1M4 LINE L1 -811 5335 5186 * 292 136 0 0 chr3 150286321 150286365 -67750793 + MLT1E3 LTR MaLR 108 151 -473 1201 279 87 65 chr3 150286368 150286736 -67750422 - L1MEd LINE L1 -4902 1217 858 1454 204 127 117 chr3 150286736 150287352 -67749806 - MLT1E2 LTR MaLR -4 622 1 1201 279 87 65 chr3 150287352 150287554 -67749604 - L1MEd LINE L1 -5261 858 662 621 204 204 50 chr3 150287554 150287735 -67749423 - MER63A DNA MER1_type -1 209 1 1201 279 87 65 chr3 150287735 150288115 -67749043 - L1MEd LINE L1 -5457 662 361 186 224 0 0 chr3 150288291 150288340 -67748818 + (CA)n Simple_repeat Simple_repeat 1 49 0 692 244 32 35 chr3 150288757 150288973 -67748185 - MIR SINE MIR -48 214 2 3644 192 19 2 chr3 150289078 150289719 -67747439 - MER82 DNA MER2_type 0 653 2 291 28 0 0 chr3 150291863 150291899 -67745259 + (TTGG)n Simple_repeat Simple_repeat 2 37 0 306 247 165 7 chr3 150292374 150292510 -67744648 - MIR SINE MIR -50 212 59 1127 61 0 0 chr3 150292731 150292862 -67744296 - AluY SINE Alu -179 132 2 185 306 0 0 chr3 150292888 150292937 -67744221 - MIR SINE MIR -73 135 87 357 186 43 0 chr3 150294288 150294358 -67742800 - L2 LINE L2 0 3313 3241 1056 191 5 28 chr3 150294405 150294620 -67742538 - MER20 DNA MER1_type -7 212 3 310 363 18 6 chr3 150294668 150294839 -67742319 - L2 LINE L2 -215 3057 2885 256 234 16 0 chr3 150295061 150295125 -67742033 - MIR SINE MIR 0 262 198 28 29 0 0 chr3 150295154 150295189 -67741969 + AT_rich Low_complexity Low_complexity 1 35 0 2010 111 50 7 chr3 150295231 150295511 -67741647 + AluSx SINE Alu 1 292 -20 706 229 36 18 chr3 150295536 150295702 -67741456 - MIR SINE MIR -74 188 20 229 254 123 29 chr3 150295814 150295952 -67741206 + L1ME4a LINE L1 4696 4846 -1300 53 17 0 0 chr3 150296101 150296161 -67740997 + AT_rich Low_complexity Low_complexity 1 60 0 269 159 0 0 chr3 150296252 150296296 -67740862 - L2 LINE L2 -6 3307 3264 2765 53 12 12 chr3 150296584 150296924 -67740234 - L1PA7 LINE L1 -1 6153 5814 659 263 133 37 chr3 150297004 150297381 -67739777 + L1ME4a LINE L1 5491 5903 -218 4108 75 10 6 chr3 150298507 150299017 -67738141 + L1PA8A LINE L1 5611 6122 -9 21 36 0 0 chr3 150299017 150299045 -67738113 + AT_rich Low_complexity Low_complexity 1 28 0 192 143 0 0 chr3 150299568 150299610 -67737548 + (TG)n Simple_repeat Simple_repeat 2 43 0 2237 97 3 0 chr3 150299663 150299975 -67737183 + AluSx SINE Alu 1 312 0 1755 181 3 0 chr3 150299985 150300272 -67736886 + AluSx SINE Alu 1 288 -24 308 296 49 74 chr3 150300459 150300662 -67736496 - MIR3 SINE MIR -6 202 5 215 295 40 81 chr3 150300883 150301032 -67736126 + MIR SINE MIR 21 163 -99 23 86 0 0 chr3 150302352 150302410 -67734748 + AT_rich Low_complexity Low_complexity 1 58 0 205 265 0 0 chr3 150304620 150304669 -67732489 - L2 LINE L2 -2 3311 3263 496 185 9 46 chr3 150304684 150304792 -67732366 - MLT1J2 LTR MaLR -2 448 345 288 318 54 34 chr3 150304794 150304942 -67732216 - MLT1I LTR MaLR -163 246 96 258 219 0 0 chr3 150305392 150305456 -67731702 + GA-rich Low_complexity Low_complexity 3 66 0 1574 183 7 33 chr3 150306186 150306487 -67730671 + AluJo SINE Alu 1 293 -19 22 0 0 0 chr3 150306487 150306509 -67730649 + AT_rich Low_complexity Low_complexity 1 22 0 707 241 48 21 chr3 150306928 150307073 -67730085 + FRAM SINE Alu 2 150 -16 22 0 0 0 chr3 150307080 150307102 -67730056 + AT_rich Low_complexity Low_complexity 1 22 0 248 331 81 31 chr3 150307453 150307613 -67729545 - MIR SINE MIR -75 187 20 191 209 23 0 chr3 150308037 150308080 -67729078 + MIR SINE MIR 100 143 -65 2309 110 0 7 chr3 150308112 150308420 -67728738 + AluSx SINE Alu 1 306 -6 197 248 276 19 chr3 150308985 150309090 -67728068 - MIR3 SINE MIR -62 146 15 1492 184 77 74 chr3 150309448 150309676 -67727482 - MLT1A1 LTR MaLR 0 365 134 2833 3 0 0 chr3 150309676 150309976 -67727182 - AluYa5 SINE Alu -11 300 1 1492 184 77 74 chr3 150309976 150310111 -67727047 - MLT1A1 LTR MaLR -231 134 1 383 219 10 31 chr3 150310996 150311092 -67726066 + MER5B DNA MER1_type 79 172 -6 443 291 61 24 chr3 150312252 150312417 -67724741 + MIR SINE MIR 1 171 -91 21 0 0 0 chr3 150313297 150313318 -67723840 + AT_rich Low_complexity Low_complexity 1 21 0 423 269 25 8 chr3 150313671 150313790 -67723368 + MER5C DNA MER1_type 4 124 -200 257 264 141 33 chr3 150314104 150314225 -67722933 + L2 LINE L2 3169 3302 -11 332 338 0 20 chr3 150314613 150314761 -67722397 + MIR3 SINE MIR 64 208 0 743 179 0 86 chr3 150315369 150315520 -67721638 + FLAM_C SINE Alu 1 138 -5 217 276 0 52 chr3 150315770 150315828 -67721330 + L2 LINE L2 3204 3258 -14 324 259 204 9 chr3 150316526 150316634 -67720524 - L2 LINE L2 0 3313 3185 662 228 0 0 chr3 150317042 150317156 -67720002 - MER81 DNA DNA 0 114 1 2419 83 3 0 chr3 150317706 150318006 -67719152 + AluSg SINE Alu 1 301 -9 695 296 60 4 chr3 150318020 150318270 -67718888 - LTR16A1 LTR ERVL -7 450 187 540 236 14 34 chr3 150318460 150318608 -67718550 + Charlie8 DNA MER1_type 127 271 -2146 274 260 27 0 chr3 150318672 150318745 -67718413 + Charlie8 DNA MER1_type 2343 2417 0 593 297 78 22 chr3 150318801 150319033 -67718125 + MIR SINE MIR 18 262 0 2365 102 0 0 chr3 150319402 150319705 -67717453 - AluSx SINE Alu -9 303 1 476 258 25 0 chr3 150320201 150320321 -67716837 + L2 LINE L2 3191 3313 0 1972 132 39 0 chr3 150320498 150320779 -67716379 - AluSx SINE Alu -20 292 1 197 360 22 34 chr3 150321369 150321458 -67715700 + L3b LINE CR1 1427 1514 -69 1126 191 14 32 chr3 150321507 150321727 -67715431 + MER20 DNA MER1_type 4 219 0 474 301 17 17 chr3 150321744 150321920 -67715238 + MIR3 SINE MIR 30 205 -3 474 238 29 0 chr3 150322157 150322262 -67714896 + MER81 DNA DNA 1 108 -6 22 0 0 0 chr3 150323201 150323223 -67713935 + AT_rich Low_complexity Low_complexity 1 22 0 1905 119 13 30 chr3 150323480 150323782 -67713376 + AluJb SINE Alu 3 299 -13 626 216 45 0 chr3 150323948 150324083 -67713075 - FLAM_A SINE Alu 0 140 1 451 331 0 7 chr3 150325399 150325535 -67711623 + MIR SINE MIR 23 157 -105 589 311 84 48 chr3 150325564 150325956 -67711202 - MLT1K LTR MaLR -27 561 156 271 307 13 27 chr3 150326591 150326666 -67710492 + MIR SINE MIR 20 93 -115 268 261 162 0 chr3 150327510 150327621 -67709537 + L1ME4a LINE L1 5593 5721 -400 309 226 63 38 chr3 150327744 150327903 -67709255 + L1ME4a LINE L1 5959 6121 0 3076 120 2 25 chr3 150328767 150329199 -67707959 - MSTC LTR MaLR -3 425 4 549 274 39 7 chr3 150329363 150329516 -67707642 - MIR SINE MIR -15 247 90 519 226 20 0 chr3 150329516 150329618 -67707540 - MER81 DNA DNA 0 114 11 251 303 22 11 chr3 150329621 150329710 -67707448 - MIR SINE MIR -168 94 5 311 273 0 11 chr3 150329758 150329846 -67707312 + GA-rich Low_complexity Low_complexity 2 88 0 22 35 0 0 chr3 150329906 150329935 -67707223 + AT_rich Low_complexity Low_complexity 1 29 0 216 0 0 0 chr3 150330759 150330783 -67706375 + (A)n Simple_repeat Simple_repeat 1 24 0 3248 255 51 24 chr3 150331065 150332085 -67705073 + L1ME LINE L1 142 1189 -5016 612 254 136 13 chr3 150332089 150332325 -67704833 + L1ME LINE L1 1531 1795 -4601 285 320 48 31 chr3 150333930 150334283 -67702875 + L1MEd LINE L1 715 1073 -5132 324 276 108 14 chr3 150334527 150334741 -67702417 + L1MEd LINE L1 1415 1703 -873 411 191 57 19 chr3 150335506 150335611 -67701547 + MLT1L LTR MaLR 110 218 -397 4440 122 58 4 chr3 150335620 150336327 -67700831 - L1MC1 LINE L1 0 6333 5589 320 233 115 101 chr3 150336528 150336651 -67700507 + MLT1L LTR MaLR 374 494 -121 2409 98 0 0 chr3 150336651 150336957 -67700201 - AluSx SINE Alu -6 306 1 320 233 115 101 chr3 150336957 150337043 -67700115 + MLT1L LTR MaLR 494 615 0 22 0 0 0 chr3 150337297 150337319 -67699839 + AT_rich Low_complexity Low_complexity 1 22 0 184 188 0 42 chr3 150338115 150338163 -67698995 - L2 LINE L2 -4 3309 3264 387 332 71 5 chr3 150338234 150338430 -67698728 - MIR SINE MIR -31 231 23 282 228 118 29 chr3 150338510 150338646 -67698512 + MIR SINE MIR 71 218 -44 381 206 47 9 chr3 150339624 150339731 -67697427 + L1MB8 LINE L1 6065 6175 -3 303 269 134 15 chr3 150341642 150341776 -67695382 - MIR3 SINE MIR -55 153 4 832 182 4 9 chr3 150341838 150342539 -67694619 + (TGG)n Simple_repeat Simple_repeat 1 698 0 1743 163 50 13 chr3 150342563 150342863 -67694295 + AluJb SINE Alu 1 311 -1 2414 103 0 0 chr3 150344419 150344729 -67692429 + AluSx SINE Alu 1 310 -2 5006 182 39 14 chr3 150345823 150347684 -67689474 + L1MB2 LINE L1 4260 6169 -2 389 290 87 34 chr3 150347695 150348233 -67688925 + L1ME3A LINE L1 4758 5324 -822 2447 234 85 85 chr3 150348280 150349121 -67688037 + L1MC5 LINE L1 6277 7134 -827 2365 90 0 3 chr3 150349121 150349421 -67687737 + AluSg SINE Alu 1 299 -11 2447 234 85 85 chr3 150349421 150350219 -67686939 + L1MC5 LINE L1 7134 7931 -30 309 291 74 74 chr3 150350225 150350510 -67686648 + L1ME3A LINE L1 5312 5596 -525 467 336 28 23 chr3 150350521 150350735 -67686423 + MIR SINE MIR 20 234 -28 331 227 196 41 chr3 150350754 150350948 -67686210 + L1ME3A LINE L1 5618 5841 -280 1704 180 242 14 chr3 150351220 150351710 -67685448 + MLT2B3 LTR ERVL 1 520 0 812 276 48 36 chr3 150351925 150352255 -67684903 - LTR16C LTR ERVL -8 483 150 1498 231 293 0 chr3 150352368 150352835 -67684323 - MER52A LTR ERV1 -1151 604 1 982 299 21 10 chr3 150352835 150353126 -67684032 + L1M3b LINE L1 468 761 -5520 * 1230 290 36 73 chr3 150353106 150353696 -67683462 + L1M3b LINE L1 624 1191 -5090 850 239 67 67 chr3 150353798 150354138 -67683020 + L1MC5 LINE L1 7172 7514 -447 1955 140 31 3 chr3 150354138 150354424 -67682734 + AluSx SINE Alu 1 294 -18 850 239 67 67 chr3 150354424 150354443 -67682715 + L1MC5 LINE L1 7513 7531 -430 376 251 30 78 chr3 150354526 150354693 -67682465 + L1ME3A LINE L1 5962 6120 -50 34 0 0 0 chr3 150354713 150354747 -67682411 + AT_rich Low_complexity Low_complexity 1 34 0 2284 114 0 0 chr3 150354752 150355050 -67682108 + AluSx SINE Alu 2 299 -13 1513 183 0 8 chr3 150355186 150355437 -67681721 + AluJo SINE Alu 1 249 -63 399 167 0 0 chr3 150355659 150355719 -67681439 + MLT1J LTR MaLR 1 60 -451 266 120 8 248 chr3 150355893 150355921 -67681237 + MER21B LTR ERV1 1 34 -829 1590 181 60 0 chr3 150355921 150356202 -67680956 + AluJb SINE Alu 1 298 -14 266 120 8 248 chr3 150356202 150356262 -67680896 + MER21B LTR ERV1 34 57 -806 1534 110 50 0 chr3 150356262 150356480 -67680678 - MER30 DNA MER1_type 0 230 2 266 120 8 248 chr3 150356480 150356507 -67680651 + MER21B LTR ERV1 57 89 -774 393 164 192 67 chr3 150356519 150356585 -67680573 + MER21B LTR ERV1 8 64 -799 2212 133 65 24 chr3 150356585 150357000 -67680158 + MSTB1 LTR MaLR 1 432 0 393 164 192 67 chr3 150357000 150357037 -67680121 + MER21B LTR ERV1 64 124 -739 583 92 0 0 chr3 150357151 150357227 -67679931 + MER21B LTR ERV1 142 217 -646 1415 199 0 4 chr3 150357346 150357597 -67679561 - AluSx SINE Alu -50 262 13 750 236 116 20 chr3 150357604 150357897 -67679261 + L1MC4a LINE L1 5620 5940 -1868 1954 144 28 0 chr3 150358193 150358484 -67678674 + AluSg SINE Alu 1 299 -11 2339 87 7 3 chr3 150358628 150358926 -67678232 + AluSg SINE Alu 1 299 -11 1572 190 35 10 chr3 150359116 150359406 -67677752 - AluJo SINE Alu -12 300 4 392 310 58 33 chr3 150359417 150359778 -67677380 + L1MC4a LINE L1 4901 5270 -876 711 204 68 29 chr3 150359787 150359993 -67677165 + L1MC4a LINE L1 5617 5830 -1978 * 2368 130 62 25 chr3 150359989 150360416 -67676742 + L1MB8 LINE L1 5675 6124 -60 2339 102 0 22 chr3 150360416 150360731 -67676427 + AluSc SINE Alu 1 308 -1 2368 130 62 25 chr3 150360731 150360787 -67676371 + L1MB8 LINE L1 6124 6176 -8 356 184 81 11 chr3 150360752 150360839 -67676319 + L1MC4a LINE L1 5812 5904 -1904 * 1621 128 26 108 chr3 150360839 150361190 -67675968 + THE1C LTR MaLR 1 322 -53 1171 201 143 39 chr3 150361290 150361674 -67675484 - MLT1D LTR MaLR -77 428 5 2555 135 48 19 chr3 150362182 150362598 -67674560 + MSTA LTR MaLR 1 428 0 454 255 51 19 chr3 150362631 150362788 -67674370 - MER103 DNA DNA -3 163 2 2497 73 0 3 chr3 150363252 150363553 -67673605 - AluSc SINE Alu -9 300 1 2115 89 45 10 chr3 150363706 150363998 -67673160 - AluSg SINE Alu -8 302 1 2239 126 0 0 chr3 150364000 150364302 -67672856 - AluSq SINE Alu -10 303 2 6437 72 14 54 chr3 150364321 150365288 -67671870 - SVA Other Other 0 1386 458 2317 88 0 3 chr3 150365463 150365760 -67671398 - AluY SINE Alu -15 296 1 415 282 188 26 chr3 150365815 150366345 -67670813 - L1 LINE L1 -1954 4192 3559 2198 95 34 3 chr3 150366345 150366641 -67670517 - AluSp SINE Alu -8 305 1 415 282 188 26 chr3 150366641 150366722 -67670436 - L1 LINE L1 -2587 3559 3492 597 173 31 12 chr3 150366728 150366890 -67670268 + CT-rich Low_complexity Low_complexity 4 168 0 219 186 0 0 chr3 150366902 150366945 -67670213 + CT-rich Low_complexity Low_complexity 4 46 0 1669 174 17 10 chr3 150367129 150367427 -67669731 - AluJo SINE Alu -12 300 1 2126 128 0 3 chr3 150367477 150367773 -67669385 + AluSx SINE Alu 1 295 -17 2410 59 0 7 chr3 150367777 150368066 -67669092 + AluY SINE Alu 1 287 -24 2164 94 10 3 chr3 150368102 150368390 -67668768 + AluSc SINE Alu 1 290 -19 2009 114 0 81 chr3 150368410 150368546 -67668612 + AluSx SINE Alu 1 146 -166 2336 91 0 3 chr3 150368546 150368843 -67668315 + AluSp SINE Alu 1 296 -17 2009 114 0 81 chr3 150368843 150369040 -67668118 + AluSx SINE Alu 146 307 -5 2337 73 13 10 chr3 150369511 150369812 -67667346 + AluY SINE Alu 1 302 -9 267 321 0 0 chr3 150370109 150370193 -67666965 + L2 LINE L2 3186 3269 -3 2263 115 0 13 chr3 150370430 150370742 -67666416 + AluSq SINE Alu 1 308 -5 1712 171 0 29 chr3 150371842 150372151 -67665007 + AluJb SINE Alu 1 300 -12 286 228 0 11 chr3 150372417 150372509 -67664649 + (TTTAA)n Simple_repeat Simple_repeat 5 95 0 492 196 26 72 chr3 150373003 150373156 -67664002 + L1MB8 LINE L1 4967 5112 -1034 * 1576 211 30 30 chr3 150373151 150373505 -67663653 + L1MB8 LINE L1 5769 6125 -53 2285 125 0 0 chr3 150373505 150373808 -67663350 - AluSx SINE Alu -4 308 6 1576 211 30 30 chr3 150373808 150373852 -67663306 + L1MB8 LINE L1 6124 6167 -11 923 160 216 0 chr3 150374098 150374292 -67662866 - MER46A DNA MER2_type 0 236 1 2482 71 0 0 chr3 150374314 150374611 -67662547 + AluY SINE Alu 1 297 -14 367 217 87 65 chr3 150374923 150375061 -67662097 - MER103 DNA DNA -7 159 19 194 350 192 8 chr3 150375192 150375452 -67661706 + L2 LINE L2 2423 2730 -584 285 322 105 56 chr3 150375538 150375929 -67661229 + L2 LINE L2 2863 3272 0 2284 113 0 3 chr3 150376530 150376839 -67660319 + AluSq SINE Alu 1 308 -5 2422 86 0 7 chr3 150377102 150377404 -67659754 + AluSq SINE Alu 1 300 -13 190 241 60 48 chr3 150377527 150377541 -67659617 - L2 LINE L2 -213 3059 3047 1940 162 0 19 chr3 150377541 150377849 -67659309 + AluJb SINE Alu 1 302 -10 190 241 60 48 chr3 150377849 150377917 -67659241 - L2 LINE L2 -225 3047 2976 432 283 27 38 chr3 150378031 150378215 -67658943 + MIR SINE MIR 63 244 -18 23 92 0 0 chr3 150378342 150378407 -67658751 + AT_rich Low_complexity Low_complexity 1 65 0 2236 117 0 3 chr3 150378517 150378817 -67658341 + AluSx SINE Alu 2 300 -12 470 177 38 108 chr3 150379273 150379431 -67657727 + L1MC5 LINE L1 7796 7942 -19 451 359 79 6 chr3 150379573 150379891 -67657267 + LTR16B LTR ERVL 124 464 0 280 170 0 0 chr3 150383348 150383401 -67653757 - L2 LINE L2 0 3313 3261 254 297 136 0 chr3 150383419 150383537 -67653621 - MIR3 SINE MIR -45 163 30 240 344 43 11 chr3 150384471 150384657 -67652501 + MIR SINE MIR 56 247 -15 326 191 0 15 chr3 150386944 150387012 -67650146 - MER112 DNA MER1_type -186 74 8 2739 139 9 25 chr3 150387014 150387454 -67649704 + Tigger2a DNA MER2_type 1 433 -1 229 281 0 0 chr3 150388236 150388293 -67648865 + (TGAA)n Simple_repeat Simple_repeat 1 57 0 245 267 0 0 chr3 150388618 150388678 -67648480 + MER113 DNA MER1_type? 457 516 -5 314 206 15 0 chr3 150390632 150390700 -67646458 + L1PB1 LINE L1 127 195 -6668 * 10807 114 40 11 chr3 150390685 150392545 -67644613 + L1PB1 LINE L1 620 2426 -4436 476 49 0 86 chr3 150392545 150392626 -67644532 - L1PA3 LINE L1 0 6155 6082 10807 114 40 11 chr3 150392626 150393678 -67643480 + L1PB1 LINE L1 2426 3752 -3110 1859 81 112 0 chr3 150393678 150393938 -67643220 + AluSg SINE Alu 1 289 -21 10807 114 40 11 chr3 150393938 150394013 -67643145 + L1PB1 LINE L1 3752 3823 -3039 5736 84 8 0 chr3 150394133 150394887 -67642271 + L1PB1 LINE L1 6107 6866 -1 194 31 0 62 chr3 150394920 150394952 -67642206 + (CATA)n Simple_repeat Simple_repeat 2 31 0 212 279 38 0 chr3 150395852 150395931 -67641227 - L2 LINE L2 -40 3232 3151 544 229 62 50 chr3 150395946 150396125 -67641033 - MER5A DNA MER1_type -8 181 1 324 266 18 37 chr3 150396422 150396531 -67640627 + MER5B DNA MER1_type 72 178 0 * 597 240 19 39 chr3 150396526 150396680 -67640478 + MER5A DNA MER1_type 1 151 -38 575 231 6 23 chr3 150396746 150396919 -67640239 - MER5B DNA MER1_type -8 170 1 821 156 12 46 chr3 150396925 150397098 -67640060 - MER5A DNA MER1_type 0 189 23 454 295 45 29 chr3 150397359 150397603 -67639555 + L1MC4a LINE L1 5760 6007 -1801 299 307 24 24 chr3 150398239 150398366 -67638792 + MIR SINE MIR 36 162 -100 328 297 17 19 chr3 150398718 150398872 -67638286 + MIR SINE MIR 1 156 -62 264 208 52 78 chr3 150400738 150400815 -67636343 + MLT1J LTR MaLR 110 184 -327 239 264 55 11 chr3 150400852 150400943 -67636215 + MLT1L LTR MaLR 347 441 -174 275 242 62 99 chr3 150401645 150401806 -67635352 + MIR SINE MIR 44 198 -64 2124 28 0 24 chr3 150402794 150403049 -67634109 - L1PA3 LINE L1 -1188 4958 4710 7791 28 0 2 chr3 150403049 150404245 -67632913 + L1PA3 LINE L1 4962 6155 0 353 303 124 10 chr3 150405038 150405328 -67631830 + L1M4 LINE L1 4733 5055 -1091 1018 196 29 0 chr3 150405815 150406019 -67631139 - MER63A DNA MER1_type 0 210 1 1905 127 31 17 chr3 150407839 150408161 -67628997 + AluJb SINE Alu 1 312 0 1881 124 81 0 chr3 150408859 150409132 -67628026 - AluSg SINE Alu -15 295 1 234 175 175 0 chr3 150409303 150409360 -67627798 + MIR SINE MIR 73 139 -123 2027 113 0 4 chr3 150409371 150409645 -67627513 + AluSx SINE Alu 1 273 -39 315 161 0 0 chr3 150409668 150409724 -67627434 + GA-rich Low_complexity Low_complexity 2 57 0 193 333 0 0 chr3 150409902 150409950 -67627208 + L2 LINE L2 3214 3261 -11 402 262 207 6 chr3 150410068 150410232 -67626926 - MIR SINE MIR -26 236 40 10805 100 134 1 chr3 150410732 150412380 -67624778 - Tigger1 DNA MER2_type -551 1867 1 735 199 85 14 chr3 150413064 150413275 -67623883 + MIR SINE MIR 37 262 0 2371 75 0 31 chr3 150413504 150413824 -67623334 + AluSg SINE Alu 1 310 0 599 264 48 9 chr3 150414285 150414512 -67622646 + L1ME4a LINE L1 5652 5887 -234 321 243 191 0 chr3 150414529 150414681 -67622477 + L1ME4a LINE L1 5939 6119 -2 2005 157 0 6 chr3 150414903 150415215 -67621943 + AluJb SINE Alu 1 310 -2 273 318 39 50 chr3 150415391 150415570 -67621588 - MIR3 SINE MIR -2 206 30 1344 111 11 5 chr3 150415862 150416052 -67621106 - AluSx SINE Alu -121 191 1 226 255 59 33 chr3 150416175 150416328 -67620830 - L1MCa LINE L1 -5055 1371 1215 356 294 75 81 chr3 150416330 150416650 -67620508 - L1MCa LINE L1 -5226 1381 1064 2137 128 0 0 chr3 150416679 150416977 -67620181 + AluSx SINE Alu 5 302 -10 1044 104 0 0 chr3 150417014 150417148 -67620010 - L1PA10 LINE L1 -23 6145 6012 1698 111 41 0 chr3 150417155 150417398 -67619760 + AluSx SINE Alu 56 308 -4 24 32 0 0 chr3 150417658 150417689 -67619469 + AT_rich Low_complexity Low_complexity 1 31 0 2203 68 0 41 chr3 150417720 150418060 -67619098 + AluSg SINE Alu 2 329 0 2155 101 50 3 chr3 150418238 150418535 -67618623 + AluSx SINE Alu 1 311 -1 388 194 157 9 chr3 150419051 150419159 -67617999 - L1ME3 LINE L1 -2 6160 6037 1692 148 19 58 chr3 150419159 150419484 -67617674 + AluJb SINE Alu 1 312 0 948 191 22 0 chr3 150419484 150419667 -67617491 + L1MC4 LINE L1 7700 7886 -156 388 272 131 35 chr3 150419707 150419909 -67617249 + LTR33A LTR ERVL 44 236 -287 725 216 26 21 chr3 150420059 150420253 -67616905 + HAL1b LINE L1 503 697 -651 257 319 80 7 chr3 150420254 150420392 -67616766 - L2 LINE L2 -192 3121 2974 621 327 20 50 chr3 150421087 150421363 -67615795 + L2 LINE L2 2985 3253 -19 392 0 21 0 chr3 150421363 150421411 -67615747 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 621 327 20 50 chr3 150421411 150421431 -67615727 + L2 LINE L2 3253 3272 0 2844 192 79 32 chr3 150421552 150422205 -67614953 - L1MC4 LINE L1 -188 7854 7164 2103 141 13 0 chr3 150422205 150422511 -67614647 - AluSx SINE Alu -2 310 1 2844 192 79 32 chr3 150422511 150422565 -67614593 - L1MC4 LINE L1 -878 7164 7114 1560 184 0 46 chr3 150422666 150422992 -67614166 - AluJb SINE Alu -1 311 1 194 341 24 12 chr3 150423164 150423249 -67613909 + MIR SINE MIR 28 113 -149 2165 126 3 0 chr3 150423261 150423563 -67613595 - AluSx SINE Alu -9 303 1 2597 61 0 6 chr3 150423741 150424053 -67613105 - AluSp SINE Alu -3 310 1 1648 127 0 0 chr3 150424439 150424660 -67612498 - AluSx SINE Alu -87 225 5 314 294 82 34 chr3 150425013 150425159 -67611999 + LTR16C LTR ERVL 88 240 -251 249 280 21 32 chr3 150425256 150425349 -67611809 + LTR16C LTR ERVL 372 463 -28 288 301 162 52 chr3 150425363 150425592 -67611566 - L2 LINE L2 -4 3268 3015 356 173 55 82 chr3 150425813 150425923 -67611235 - MER113 DNA MER1_type? -411 110 4 293 286 12 0 chr3 150426103 150426187 -67610971 - L2 LINE L2 -676 2638 2554 216 0 0 0 chr3 150426291 150426315 -67610843 + (CA)n Simple_repeat Simple_repeat 1 24 0 464 247 177 16 chr3 150426455 150426641 -67610517 - MIR SINE MIR -10 252 37 21 0 0 0 chr3 150427226 150427247 -67609911 + GC_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 150427327 150427351 -67609807 + GC_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr3 150428098 150428130 -67609028 + AT_rich Low_complexity Low_complexity 1 32 0 293 361 93 19 chr3 150428167 150428383 -67608775 + L3 LINE CR1 1318 1549 -28 2476 88 0 7 chr3 150430001 150430309 -67606849 - AluSq SINE Alu -7 306 1 419 313 68 43 chr3 150430469 150430820 -67606338 - L2 LINE L2 -24 3289 2930 184 224 0 20 chr3 150430867 150430916 -67606242 + L2 LINE L2 3216 3263 -9 4640 181 70 47 chr3 150431080 150431995 -67605163 - L1MD2 LINE L1 -2 6357 5464 2273 89 0 0 chr3 150431995 150432276 -67604882 - AluY SINE Alu -10 301 21 1573 172 67 0 chr3 150432286 150432554 -67604604 - AluJb SINE Alu -26 286 1 4640 181 70 47 chr3 150432554 150432680 -67604478 - L1MD2 LINE L1 -903 5456 5334 2106 134 7 0 chr3 150432680 150432987 -67604171 - AluSq SINE Alu -4 309 1 1962 131 7 17 chr3 150432994 150433285 -67603873 - AluSx SINE Alu -24 288 1 4640 181 70 47 chr3 150433285 150433381 -67603777 - L1MD2 LINE L1 -1030 5329 5186 789 234 77 0 chr3 150433397 150433619 -67603539 + L1MD2 LINE L1 4958 5196 -950 2450 61 0 3 chr3 150433766 150434062 -67603096 - AluY SINE Alu -16 295 1 2504 51 14 3 chr3 150434062 150434357 -67602801 - AluY SINE Alu -12 299 1 2389 81 0 13 chr3 150434713 150435023 -67602135 + AluYb8 SINE Alu 2 307 -11 181 292 42 125 chr3 150435861 150436053 -67601105 - L2 LINE L2 -806 2508 2333 2220 93 14 7 chr3 150436305 150436594 -67600564 + AluSq SINE Alu 1 291 -22 585 203 0 57 chr3 150437767 150437890 -67599268 + FLAM_A SINE Alu 1 116 -17 324 272 177 20 chr3 150438019 150438166 -67598992 - MIR3 SINE MIR -5 203 34 1930 120 7 3 chr3 150438212 150438528 -67598630 - AluY SINE Alu 0 317 1 29 0 0 0 chr3 150438662 150438691 -67598467 + AT_rich Low_complexity Low_complexity 1 29 0 317 272 252 44 chr3 150439128 150439334 -67597824 + L3 LINE CR1 1222 1470 -107 1466 248 153 13 chr3 150439731 150440364 -67596794 - MER20B DNA MER1_type -2 781 34 2219 112 13 0 chr3 150440621 150440925 -67596233 - AluSx SINE Alu -4 308 1 194 256 110 73 chr3 150441075 150441157 -67596001 + L2 LINE L2 2897 2981 -291 2210 107 7 0 chr3 150441168 150441476 -67595682 - AluSg SINE Alu 0 310 1 243 355 66 8 chr3 150442319 150442440 -67594718 - MIR SINE MIR -115 147 20 409 273 0 0 chr3 150442876 150442975 -67594183 - MER94 DNA DNA -21 113 15 1298 254 153 30 chr3 150442983 150443447 -67593711 - MLT1F LTR MaLR -2 540 20 855 256 219 4 chr3 150443567 150443837 -67593321 + L2 LINE L2 1131 1458 -1856 762 114 0 100 chr3 150443837 150443977 -67593181 - AluSq SINE Alu -53 260 135 2524 254 138 49 chr3 150444008 150444773 -67592385 + L2 LINE L2 1547 2436 -878 2049 96 65 7 chr3 150444773 150445064 -67592094 - AluSg SINE Alu -1 309 2 2524 254 138 49 chr3 150445064 150445372 -67591786 + L2 LINE L2 2436 2715 -599 808 148 0 22 chr3 150445372 150445507 -67591651 + FLAM_C SINE Alu 1 132 -11 383 238 59 20 chr3 150445523 150445624 -67591534 + L2 LINE L2 2705 2809 -505 1254 196 111 8 chr3 150445626 150445978 -67591180 - Charlie5 DNA MER1_type 0 2623 2236 393 146 154 27 chr3 150445980 150446090 -67591068 - Charlie5 DNA MER1_type -2488 124 1 872 281 40 29 chr3 150446099 150446373 -67590785 + L2 LINE L2 2811 3087 -226 242 345 136 0 chr3 150446862 150446972 -67590186 + L2 LINE L2 2967 3091 -181 230 306 28 0 chr3 150447496 150447568 -67589590 + MIR3 SINE MIR 128 201 -7 515 221 11 0 chr3 150447697 150447792 -67589366 + FLAM_A SINE Alu 1 96 -46 2266 85 0 3 chr3 150447902 150448184 -67588974 + AluSg SINE Alu 1 281 -29 195 42 0 0 chr3 150449962 150449986 -67587172 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 416 261 101 101 chr3 150451346 150451603 -67585555 + MIR SINE MIR 6 262 0 2434 60 10 0 chr3 150452025 150452323 -67584835 - AluSp SINE Alu -12 301 1 518 256 0 8 chr3 150452707 150452828 -67584330 + FLAM_A SINE Alu 5 124 -9 1620 142 35 4 chr3 150453594 150453854 -67583304 + AluJb SINE Alu 1 268 -44 1900 123 11 18 chr3 150454374 150454651 -67582507 - AluSx SINE Alu -13 299 25 2359 93 0 0 chr3 150454931 150455232 -67581926 - AluY SINE Alu -10 301 1 1852 77 0 98 chr3 150455559 150455872 -67581286 - AluSg SINE Alu 0 316 32 1822 151 69 0 chr3 150456605 150456922 -67580236 + MER7A DNA MER2_type 2 338 -8 180 125 0 0 chr3 150457118 150457150 -67580008 + (T)n Simple_repeat Simple_repeat 1 32 0 383 323 54 8 chr3 150457736 150457866 -67579292 - L2 LINE L2 0 3272 3137 206 317 155 0 chr3 150458766 150458908 -67578250 + MIR SINE MIR 49 212 -50 272 231 99 11 chr3 150459118 150459209 -67577949 - L2 LINE L2 -208 3064 2966 1960 163 0 0 chr3 150460400 150460706 -67576452 - AluJb SINE Alu -6 306 1 733 226 53 8 chr3 150460899 150461142 -67576016 + L1MEc LINE L1 1795 2048 -4348 1235 195 13 80 chr3 150463569 150463672 -67573486 + AluJo SINE Alu 14 122 -190 2249 94 0 7 chr3 150463672 150463971 -67573187 - AluSg1 SINE Alu -11 298 2 1235 195 13 80 chr3 150463971 150464169 -67572989 + AluJo SINE Alu 122 295 -17 1638 172 7 4 chr3 150464183 150464456 -67572702 + AluSx SINE Alu 2 275 -37 2038 83 20 27 chr3 150464824 150465125 -67572033 - AluSc SINE Alu -10 299 1 304 146 0 0 chr3 150465125 150465180 -67571978 - L1MA4 LINE L1 -160 6140 6086 228 182 0 0 chr3 150465283 150465327 -67571831 + (TG)n Simple_repeat Simple_repeat 1 44 0 2332 98 0 10 chr3 150465701 150466008 -67571150 - AluSg SINE Alu -6 304 1 656 230 86 6 chr3 150466091 150466265 -67570893 - MER5A DNA MER1_type -1 188 1 347 241 161 0 chr3 150467436 150467523 -67569635 + MER5A DNA MER1_type 5 105 -84 2038 122 16 16 chr3 150467682 150467994 -67569164 - AluSx SINE Alu 0 312 1 653 56 11 0 chr3 150468849 150468939 -67568219 + (TA)n Simple_repeat Simple_repeat 1 91 0 969 203 101 54 chr3 150468939 150469318 -67567840 - L1MC4a LINE L1 -190 5931 5502 2011 141 0 10 chr3 150470083 150470388 -67566770 + AluJb SINE Alu 1 302 -10 630 98 0 226 chr3 150471349 150471513 -67565645 + FLAM_C SINE Alu 1 127 -6 2263 114 0 16 chr3 150471676 150471991 -67565167 - AluSx SINE Alu -2 310 1 698 241 111 4 chr3 150472241 150472494 -67564664 + L1MC4a LINE L1 5685 5964 -1844 252 217 14 58 chr3 150472841 150472910 -67564248 + MIR SINE MIR 184 249 -13 277 265 75 34 chr3 150473067 150473214 -67563944 + L1ME LINE L1 5629 5781 -340 2134 114 0 22 chr3 150473809 150474125 -67563033 - AluSc SINE Alu 0 309 1 2411 78 0 3 chr3 150475514 150475821 -67561337 - AluY SINE Alu -5 306 1 2359 81 3 3 chr3 150477783 150478080 -67559078 - AluSg SINE Alu -13 297 1 184 210 16 97 chr3 150478093 150478155 -67559003 + L2 LINE L2 3216 3272 0 258 294 94 50 chr3 150479772 150479932 -67557226 + MIR SINE MIR 47 213 -49 193 283 71 30 chr3 150480160 150480259 -67556899 + MIR SINE MIR 100 202 -60 1767 84 4 0 chr3 150480560 150480785 -67556373 + AluSg/x SINE Alu 77 302 -10 181 377 41 20 chr3 150481067 150481213 -67555945 + L3 LINE CR1 312 460 -1117 24 32 0 0 chr3 150483348 150483379 -67553779 + AT_rich Low_complexity Low_complexity 1 31 0 340 254 59 34 chr3 150483527 150483645 -67553513 - MARNA DNA Mariner -395 191 71 2274 78 0 3 chr3 150483981 150484294 -67552864 - AluY SINE Alu 0 312 1 245 189 0 0 chr3 150487591 150487644 -67549514 + L2 LINE L2 3257 3309 -4 641 169 8 8 chr3 150488709 150488833 -67548325 + L2 LINE L2 3190 3313 0 280 282 39 0 chr3 150489926 150490004 -67547154 + MIR SINE MIR 170 250 -12 25 31 0 0 chr3 150490042 150490074 -67547084 + AT_rich Low_complexity Low_complexity 1 32 0 28 48 0 0 chr3 150490231 150490273 -67546885 + AT_rich Low_complexity Low_complexity 1 42 0 1938 130 0 63 chr3 150490582 150490897 -67546261 + AluJb SINE Alu 1 295 -17 1057 243 80 3 chr3 150491825 150492138 -67545020 + MER58B DNA MER1_type 2 338 -3 2536 63 0 3 chr3 150492170 150492472 -67544686 - AluSx SINE Alu -11 301 1 277 273 127 7 chr3 150493593 150493743 -67543415 + L1ME2 LINE L1 5777 5944 -220 25 31 0 0 chr3 150493907 150493939 -67543219 + AT_rich Low_complexity Low_complexity 1 32 0 2449 81 0 10 chr3 150493949 150494259 -67542899 + AluSq SINE Alu 1 307 -6 1730 145 3 40 chr3 150495060 150495363 -67541795 + AluJb SINE Alu 1 292 -20 756 263 125 48 chr3 150495406 150495972 -67541186 + L1MC5 LINE L1 7317 7926 -35 2081 95 60 0 chr3 150496518 150496802 -67540356 + AluSq SINE Alu 1 301 -12 223 268 0 93 chr3 150496890 150496987 -67540171 + L2 LINE L2 3226 3313 0 207 204 0 0 chr3 150497758 150497802 -67539356 + T-rich Low_complexity Low_complexity 1 44 0 1505 138 0 0 chr3 150498003 150498228 -67538930 + AluSg/x SINE Alu 83 307 -3 2314 94 0 3 chr3 150498256 150498555 -67538603 + AluSg SINE Alu 7 304 -6 207 0 0 0 chr3 150498578 150498601 -67538557 + (TA)n Simple_repeat Simple_repeat 2 24 0 922 129 8 0 chr3 150498601 150498733 -67538425 - L1PA10 LINE L1 -24 6144 6012 2026 197 113 37 chr3 150498912 150499425 -67537733 + MER21B LTR ERV1 255 806 -57 242 321 15 8 chr3 150499701 150499835 -67537323 + (CA)n Simple_repeat Simple_repeat 2 136 0 238 306 17 28 chr3 150499752 150499932 -67537226 + (CATA)n Simple_repeat Simple_repeat 3 180 0 * 215 226 18 24 chr3 150501829 150501993 -67535165 + (CA)n Simple_repeat Simple_repeat 1 163 0 237 167 0 0 chr3 150503061 150503103 -67534055 + L2 LINE L2 3210 3251 -21 414 287 9 0 chr3 150503302 150503410 -67533748 + MLT1J1 LTR MaLR 52 160 -286 297 276 136 41 chr3 150503605 150503826 -67533332 + L1MC/D LINE L1 5626 5867 -1941 189 74 0 0 chr3 150504069 150504096 -67533062 + (TA)n Simple_repeat Simple_repeat 1 27 0 2116 153 9 0 chr3 150504097 150504436 -67532722 + MER2 DNA MER2_type 1 342 -2 23 0 0 0 chr3 150504707 150504730 -67532428 + AT_rich Low_complexity Low_complexity 1 23 0 201 74 0 0 chr3 150504831 150504858 -67532300 + (T)n Simple_repeat Simple_repeat 1 27 0 2393 62 3 3 chr3 150504995 150505284 -67531874 + AluY SINE Alu 1 289 -22 240 35 0 0 chr3 150505314 150505343 -67531815 + (GA)n Simple_repeat Simple_repeat 2 30 0 194 184 82 0 chr3 150505534 150505583 -67531575 - MIR SINE MIR -87 175 123 1997 187 17 47 chr3 150505583 150505999 -67531159 + MSTD LTR MaLR 6 396 0 1254 56 0 0 chr3 150506477 150506620 -67530538 - AluY SINE Alu -62 249 107 629 75 128 0 chr3 150507313 150507407 -67529751 + MER5A DNA MER1_type 1 106 -83 375 238 0 69 chr3 150507410 150507511 -67529647 - MER102b DNA MER1_type -53 288 195 519 246 217 10 chr3 150507650 150507857 -67529301 - MIR SINE MIR -11 251 2 4280 63 77 3 chr3 150507952 150508538 -67528620 + L1PA8 LINE L1 5542 6170 -2 510 83 0 0 chr3 150508538 150508610 -67528548 - L1P LINE L1 -994 5152 5081 2340 63 0 3 chr3 150508610 150508907 -67528251 + L1PA6 LINE L1 5856 6153 -1 180 0 0 0 chr3 150508919 150508939 -67528219 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 259 297 40 0 chr3 150509056 150509157 -67528001 - L2 LINE L2 -1 3271 3167 473 243 52 52 chr3 150509162 150509372 -67527786 - MIR SINE MIR 0 262 53 225 287 21 43 chr3 150509506 150509600 -67527558 + L2 LINE L2 3142 3233 -39 2362 95 0 23 chr3 150510156 150510461 -67526697 + AluSq SINE Alu 1 298 -15 207 207 17 17 chr3 150510483 150510513 -67526645 + (ATG)n Simple_repeat Simple_repeat 2 34 -25 509 267 125 9 chr3 150510513 150510745 -67526413 - MIR SINE MIR -1 261 3 207 207 17 17 chr3 150510745 150510772 -67526386 + (ATG)n Simple_repeat Simple_repeat 33 59 0 2317 109 0 0 chr3 150511110 150511412 -67525746 + AluSx SINE Alu 3 304 -8 195 279 13 38 chr3 150511615 150511694 -67525464 - L3 LINE CR1 -104 1473 1397 21 0 0 0 chr3 150512350 150512371 -67524787 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 150514992 150515013 -67522145 + AT_rich Low_complexity Low_complexity 1 21 0 3924 132 27 44 chr3 150515357 150515718 -67521440 + L1MB3 LINE L1 5491 5836 -347 2196 162 8 8 chr3 150515718 150516083 -67521075 - MLT1A1 LTR MaLR 0 365 1 3924 132 27 44 chr3 150516083 150516419 -67520739 + L1MB3 LINE L1 5836 6176 -7 407 221 70 44 chr3 150516571 150516754 -67520404 + MIR SINE MIR 15 204 -52 361 234 37 37 chr3 150517714 150517821 -67519337 + MER102b DNA MER1_type 102 208 -133 1438 185 104 45 chr3 150518086 150518131 -67519027 - Charlie4a DNA MER1_type -1484 477 436 2437 76 0 0 chr3 150518131 150518447 -67518711 - AluSc SINE Alu 0 309 1 1438 185 104 45 chr3 150518447 150518822 -67518336 - Charlie4a DNA MER1_type -1525 436 32 276 308 29 54 chr3 150519400 150519622 -67517536 + L1MC4a LINE L1 5688 5905 -1903 2213 113 0 10 chr3 150519622 150519922 -67517236 - AluSq SINE Alu -16 297 1 276 308 29 54 chr3 150519922 150519939 -67517219 + L1MC4a LINE L1 5905 5921 -1887 273 57 0 0 chr3 150520616 150520651 -67516507 + (TG)n Simple_repeat Simple_repeat 2 36 0 1565 183 25 0 chr3 150520653 150520952 -67516206 - AluJo SINE Alu 0 306 1 1791 164 31 0 chr3 150521328 150521615 -67515543 - AluJb SINE Alu -16 296 1 21 0 0 0 chr3 150521810 150521831 -67515327 + AT_rich Low_complexity Low_complexity 1 21 0 308 121 0 30 chr3 150521831 150521897 -67515261 - L1MA8 LINE L1 -1 6290 6227 342 254 105 18 chr3 150522078 150522192 -67514966 + L2 LINE L2 3190 3313 0 548 261 125 5 chr3 150522342 150522526 -67514632 + MLT1J LTR MaLR 106 311 -200 388 266 246 33 chr3 150523822 150524123 -67513035 - L2 LINE L2 -1 3312 2948 734 233 175 54 chr3 150524258 150524704 -67512454 - L2 LINE L2 -365 2949 2450 383 94 31 0 chr3 150524989 150525053 -67512105 + CT-rich Low_complexity Low_complexity 5 70 0 690 197 0 8 chr3 150525237 150525359 -67511799 - FLAM_A SINE Alu -11 122 2 467 256 48 128 chr3 150526750 150526873 -67510285 + L1M4 LINE L1 3662 3793 -2353 695 193 7 22 chr3 150526873 150527008 -67510150 + FLAM_A SINE Alu 1 133 0 467 256 48 128 chr3 150527008 150527430 -67509728 + L1M4 LINE L1 3793 4163 -1983 358 266 31 31 chr3 150527514 150527642 -67509516 - MIR SINE MIR -123 139 12 2295 115 0 0 chr3 150529352 150529657 -67507501 - AluSx SINE Alu -7 305 1 589 149 75 0 chr3 150531827 150531934 -67505224 + MLT1A2 LTR MaLR 1 115 -259 189 0 0 0 chr3 150531957 150531978 -67505180 + (TC)n Simple_repeat Simple_repeat 2 22 0 429 114 61 7 chr3 150532017 150532096 -67505062 + MLT1A2 LTR MaLR 305 374 0 366 273 9 9 chr3 150532374 150532484 -67504674 + L2 LINE L2 2394 2503 -811 792 300 77 66 chr3 150532486 150532729 -67504429 - LTR16B LTR ERVL -6 458 206 2368 92 0 0 chr3 150532729 150533024 -67504134 + AluSx SINE Alu 1 295 -17 792 300 77 66 chr3 150533024 150533233 -67503925 - LTR16B LTR ERVL -258 206 1 464 243 14 35 chr3 150533523 150533667 -67503491 - HERV16 LTR ERVL -301 4695 4555 1780 329 68 21 chr3 150533676 150534285 -67502873 - ERVL LTR ERVL -744 5020 4360 3132 114 12 107 chr3 150534285 150534854 -67502304 + MLT2B2 LTR ERVL 1 515 0 1780 329 68 21 chr3 150534854 150535081 -67502077 - ERVL LTR ERVL -1404 4360 4145 367 283 52 12 chr3 150535144 150535383 -67501775 - L1P5 LINE L1 -705 5446 5199 328 332 43 75 chr3 150535532 150535601 -67501557 - L1M4 LINE L1 -1030 5116 5046 2052 159 0 13 chr3 150535601 150535915 -67501243 - AluSx SINE Alu -2 310 1 328 332 43 75 chr3 150535915 150536194 -67500964 - L1M4 LINE L1 -1100 5046 4779 216 271 17 0 chr3 150536443 150536502 -67500656 + GA-rich Low_complexity Low_complexity 1 60 0 1174 233 42 0 chr3 150537168 150537430 -67499728 + L1MEc LINE L1 36 308 -6088 1552 141 16 66 chr3 150537430 150537902 -67499256 + L1P5 LINE L1 4958 5387 -764 2344 113 0 0 chr3 150537902 150538213 -67498945 + AluSx SINE Alu 1 311 -1 1552 141 16 66 chr3 150538213 150538320 -67498838 + L1P5 LINE L1 5387 5498 -653 2398 95 3 3 chr3 150538323 150538629 -67498529 + AluSq SINE Alu 1 306 -7 883 270 35 37 chr3 150538636 150538875 -67498283 + L1MEc LINE L1 1067 1307 -5089 2103 109 7 0 chr3 150538875 150539181 -67497977 + AluSp SINE Alu 1 308 0 883 270 35 37 chr3 150539181 150539344 -67497814 + L1MEc LINE L1 1307 1469 -4927 * 3879 207 22 11 chr3 150539343 150540287 -67496871 + L1MC1 LINE L1 4337 5291 -855 1727 127 0 0 chr3 150540387 150540655 -67496503 + AluSx SINE Alu 59 312 0 6233 155 17 1 chr3 150540655 150541650 -67495508 + L1MC1 LINE L1 5323 6333 0 2101 244 31 38 chr3 150541647 150541824 -67495334 + L1MEc LINE L1 1455 1632 -4764 * 2365 82 0 3 chr3 150541824 150542129 -67495029 + AluY SINE Alu 1 304 -7 2101 244 31 38 chr3 150542129 150542751 -67494407 + L1MEc LINE L1 1632 2249 -4147 656 241 64 117 chr3 150542946 150543068 -67494090 + L1MC5 LINE L1 6476 6603 -1205 396 0 0 0 chr3 150543068 150543112 -67494046 + (TG)n Simple_repeat Simple_repeat 2 45 0 656 241 64 117 chr3 150543112 150543234 -67493924 + L1MC5 LINE L1 6603 6730 -1078 2316 81 10 0 chr3 150543234 150543542 -67493616 + AluY SINE Alu 1 311 0 656 241 64 117 chr3 150543542 150543757 -67493401 + L1MC5 LINE L1 6730 6946 -862 313 185 0 160 chr3 150544509 150544628 -67492530 + MER102b DNA MER1_type 233 332 -9 2181 110 3 3 chr3 150544645 150544946 -67492212 - AluSg SINE Alu -9 301 1 791 148 169 0 chr3 150545603 150545745 -67491413 + MER5B DNA MER1_type 1 166 -12 496 219 18 35 chr3 150545761 150545875 -67491283 - MER5A DNA MER1_type 0 189 78 231 305 32 21 chr3 150546308 150546403 -67490755 - L2 LINE L2 -619 2695 2600 294 337 55 25 chr3 150546982 150547145 -67490013 - L2 LINE L2 0 3272 3105 2144 267 117 33 chr3 150547442 150548034 -67489124 - L2 LINE L2 -3 3310 2769 2387 102 0 6 chr3 150548034 150548349 -67488809 - AluSq SINE Alu 0 313 1 2144 267 117 33 chr3 150548349 150548962 -67488196 - L2 LINE L2 -544 2769 2002 210 338 0 14 chr3 150548962 150549033 -67488125 + L2 LINE L2 2985 3054 -218 2133 125 10 0 chr3 150549269 150549574 -67487584 + AluSg SINE Alu 1 308 -2 2208 124 0 6 chr3 150550893 150551208 -67485950 - AluSq SINE Alu 0 313 1 183 80 0 0 chr3 150552551 150552576 -67484582 + (A)n Simple_repeat Simple_repeat 1 25 0 2273 112 3 3 chr3 150557202 150557514 -67479644 - AluSx SINE Alu 0 312 1 585 223 25 144 chr3 150557885 150558133 -67479025 - MIR SINE MIR -17 245 36 329 351 15 0 chr3 150559907 150560038 -67477120 - MIR SINE MIR 0 262 130 221 212 169 37 chr3 150560172 150560302 -67476856 - MIR SINE MIR -26 236 88 261 236 34 45 chr3 150560583 150560672 -67476486 - MER5A DNA MER1_type -37 152 65 231 320 72 10 chr3 150561524 150561621 -67475537 + MLT1K LTR MaLR 24 126 -462 450 309 195 20 chr3 150563760 150564262 -67472896 - L2 LINE L2 -1117 2197 1608 666 188 106 80 chr3 150564972 150565131 -67472027 + L1MA4 LINE L1 2771 2924 -4642 1920 125 47 27 chr3 150565131 150565427 -67471731 + AluSx SINE Alu 1 302 -10 666 188 106 80 chr3 150565427 150565509 -67471649 + L1MA4 LINE L1 2924 3238 -4328 1980 139 0 0 chr3 150565511 150565784 -67471374 + AluSx SINE Alu 1 273 -39 531 86 29 0 chr3 150565784 150565854 -67471304 + Alu SINE Alu 222 293 -16 2079 110 45 0 chr3 150565854 150566145 -67471013 + AluSp SINE Alu 1 304 -9 14310 160 72 15 chr3 150566146 150569217 -67467941 + L1MA4 LINE L1 3628 6979 -740 2178 99 0 3 chr3 150569217 150569528 -67467630 + AluSx SINE Alu 1 310 0 14310 160 72 15 chr3 150569528 150570312 -67466846 + L1MA4 LINE L1 6979 7717 -2 1318 134 60 48 chr3 150571489 150571758 -67465400 + AluSx SINE Alu 41 312 0 2512 58 0 3 chr3 150572162 150572472 -67464686 - AluY SINE Alu -2 309 1 188 348 137 31 chr3 150572679 150572840 -67464318 + MIR3 SINE MIR 14 191 -17 23 0 0 0 chr3 150573429 150573452 -67463706 + AT_rich Low_complexity Low_complexity 1 23 0 200 382 73 9 chr3 150575793 150575903 -67461255 + L2 LINE L2 3154 3270 -2 269 139 276 4 chr3 150576096 150576169 -67460989 - MIR SINE MIR -58 150 80 236 353 28 56 chr3 150577034 150577283 -67459875 - L2 LINE L2 -821 2493 2252 653 212 16 93 chr3 150578313 150578506 -67458652 - MER5B DNA MER1_type 0 178 1 380 227 357 11 chr3 150578617 150578802 -67458356 + MIR SINE MIR 14 262 0 2433 94 0 0 chr3 150580171 150580480 -67456678 - AluSg SINE Alu -1 309 1 1663 165 16 33 chr3 150580657 150580960 -67456198 - AluJb SINE Alu -14 298 1 287 169 68 0 chr3 150582139 150582198 -67454960 - MER46C DNA MER2_type 0 338 276 255 233 68 0 chr3 150582310 150582383 -67454775 - MIR SINE MIR -72 190 113 2051 120 0 10 chr3 150583778 150584086 -67453072 + AluSx SINE Alu 1 305 -7 1232 172 5 18 chr3 150584399 150584620 -67452538 + AluJo SINE Alu 85 302 -10 1185 208 19 57 chr3 150584650 150585016 -67452142 + L1MC4 LINE L1 7688 8039 -3 459 333 34 34 chr3 150585119 150585383 -67451775 - MARNA DNA Mariner -202 384 121 213 94 0 0 chr3 150585627 150585659 -67451499 + (T)n Simple_repeat Simple_repeat 1 32 0 313 238 56 94 chr3 150586254 150586376 -67450782 - MIR SINE MIR -33 229 113 694 158 0 36 chr3 150586376 150586515 -67450643 - L1MA8 LINE L1 -2 6289 6156 313 238 56 94 chr3 150586515 150586552 -67450606 - MIR SINE MIR -149 113 76 343 273 71 63 chr3 150586725 150586936 -67450222 - MIR SINE MIR -26 236 16 207 306 201 46 chr3 150587023 150587457 -67449701 + L2 LINE L2 1968 2468 -846 187 280 40 0 chr3 150587455 150587505 -67449653 - MIR3 SINE MIR -154 54 3 * 1263 122 0 41 chr3 150587604 150587800 -67449358 - AluSg/x SINE Alu 0 312 125 2239 102 10 0 chr3 150588415 150588709 -67448449 + AluSg SINE Alu 1 297 -13 22 0 0 0 chr3 150588722 150588744 -67448414 + AT_rich Low_complexity Low_complexity 1 22 0 1946 141 0 7 chr3 150589642 150589939 -67447219 - AluSx SINE Alu -17 295 1 311 179 15 0 chr3 150590017 150590084 -67447074 + (TATG)n Simple_repeat Simple_repeat 1 68 0 277 286 26 0 chr3 150591019 150591096 -67446062 + L1ME3A LINE L1 6031 6109 -61 2346 78 0 7 chr3 150591096 150591392 -67445766 + AluY SINE Alu 1 294 -17 232 233 233 0 chr3 150591429 150591502 -67445656 - MIR SINE MIR -157 105 16 553 215 15 15 chr3 150592082 150592212 -67444946 - L1MA10 LINE L1 -14 6320 6191 1946 217 105 49 chr3 150592212 150594046 -67443112 + L1ME1 LINE L1 4066 6090 -76 2176 104 14 0 chr3 150594046 150594335 -67442823 + AluSx SINE Alu 1 293 -19 1946 217 105 49 chr3 150594335 150594390 -67442768 + L1ME1 LINE L1 6090 6141 -25 3582 232 71 56 chr3 150594407 150595729 -67441429 - L1M4 LINE L1 -1518 4628 3281 2220 102 3 0 chr3 150595729 150596024 -67441134 - AluSx SINE Alu -16 296 1 3582 232 71 56 chr3 150596024 150596151 -67441007 - L1M4 LINE L1 -2865 3281 3157 1984 138 0 14 chr3 150596152 150596305 -67440853 - AluSx SINE Alu -26 286 137 2311 104 0 0 chr3 150596305 150596612 -67440546 - AluSg SINE Alu -3 307 1 1984 138 0 14 chr3 150596612 150596748 -67440410 - AluSx SINE Alu -175 137 1 840 267 67 0 chr3 150596760 150596970 -67440188 - MER58A DNA MER1_type 0 224 1 183 42 0 0 chr3 150597032 150597056 -67440102 + (TG)n Simple_repeat Simple_repeat 2 25 0 2213 116 3 0 chr3 150597109 150597410 -67439748 - AluSc SINE Alu -7 302 1 2164 93 38 3 chr3 150598186 150598476 -67438682 + AluSg SINE Alu 1 300 -10 273 331 162 45 chr3 150599168 150599434 -67437724 + L2 LINE L2 2968 3264 -8 352 309 109 60 chr3 150600505 150600854 -67436304 + L2 LINE L2 518 883 -2431 250 308 50 25 chr3 150601012 150601132 -67436026 + L2 LINE L2 1295 1417 -1897 843 334 93 12 chr3 150601133 150601627 -67435531 + L2 LINE L2 2736 3267 -5 1021 303 215 31 chr3 150601697 150601770 -67435388 + L2 LINE L2 1705 1763 -1550 2136 116 10 3 chr3 150601770 150602063 -67435095 - AluSx SINE Alu -17 295 1 1021 303 215 31 chr3 150602063 150602382 -67434776 + L2 LINE L2 1763 2022 -1291 643 267 11 22 chr3 150602382 150602562 -67434596 - MER5B DNA MER1_type 0 178 1 1021 303 215 31 chr3 150602562 150603293 -67433865 + L2 LINE L2 2022 3109 -204 1812 58 5 5 chr3 150603778 150604002 -67433156 + AluY SINE Alu 86 309 -2 592 274 179 0 chr3 150605730 150605942 -67431216 + MIR SINE MIR 12 261 -1 21 36 0 0 chr3 150606424 150606452 -67430706 + GC_rich Low_complexity Low_complexity 1 28 0 243 250 0 53 chr3 150606464 150606540 -67430618 + CT-rich Low_complexity Low_complexity 5 76 0 234 268 42 0 chr3 150607117 150607188 -67429970 - MIR3 SINE MIR -53 155 82 413 61 0 0 chr3 150607762 150607811 -67429347 + AluY SINE Alu 201 249 -62 816 170 7 7 chr3 150659658 150659799 -67377359 + MER2 DNA MER2_type 1 141 -204 897 123 216 0 chr3 150659812 150659974 -67377184 - MER30 DNA MER1_type -33 197 1 511 100 12 0 chr3 150659974 150660052 -67377106 + MER2 DNA MER2_type 132 210 -135 1825 92 107 4 chr3 150660230 150660501 -67376657 + AluSc SINE Alu 11 309 0 809 196 112 165 chr3 150660502 150661324 -67375834 + L1ME3A LINE L1 5178 5950 -220 695 147 45 39 chr3 150661446 150661602 -67375556 + L1MA10 LINE L1 6175 6331 -3 27 0 0 0 chr3 150661645 150661672 -67375486 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr3 150661840 150661865 -67375293 + AT_rich Low_complexity Low_complexity 1 25 0 6617 88 59 14 chr3 150661954 150662960 -67374198 - L1MA2 LINE L1 0 6304 5254 6851 111 161 110 chr3 150662965 150664580 -67372578 + pTR5 LTR ERV1 742 2438 0 5724 47 148 150 chr3 150664600 150665770 -67371388 - MER11A LTR ERVK 0 1266 1 4050 164 5 3 chr3 150665773 150666507 -67370651 - L1MA2 LINE L1 -909 5237 4502 21 0 0 0 chr3 150666982 150667003 -67370155 + AT_rich Low_complexity Low_complexity 1 21 0 2198 101 10 10 chr3 150667003 150667311 -67369847 + AluY SINE Alu 1 308 -3 19467 62 2 0 chr3 150667313 150669735 -67367423 + L1P LINE L1 2 2427 -3719 1070 131 9 56 chr3 150669863 150670036 -67367122 + L1MA4 LINE L1 6092 6255 -45 5108 160 38 60 chr3 150670036 150671127 -67366031 + MER11C LTR ERVK 1 1067 -4 1070 131 9 56 chr3 150671127 150671167 -67365991 + L1MA4 LINE L1 6255 6295 -5 2234 121 0 6 chr3 150671325 150671639 -67365519 + AluSx SINE Alu 1 312 0 303 19 38 38 chr3 150671864 150671917 -67365241 + (AAATG)n Simple_repeat Simple_repeat 3 55 0 4746 153 15 12 chr3 150672114 150672845 -67364313 - MER44D DNA MER2_type 0 605 1 1513 179 14 7 chr3 150672868 150673148 -67364010 + L1 LINE L1 3624 3905 -2241 4322 174 66 21 chr3 150673540 150674438 -67362720 + L1PBa LINE L1 1 938 -5925 1212 169 60 25 chr3 150674628 150674668 -67362490 - L1MC/D LINE L1 -517 7057 7020 288 111 0 0 chr3 150674668 150674713 -67362445 + (CATA)n Simple_repeat Simple_repeat 1 45 0 1212 169 60 25 chr3 150674713 150675056 -67362102 - L1MC/D LINE L1 -554 7020 3344 663 221 16 8 chr3 150675087 150675209 -67361949 - AluSq/x SINE Alu -188 125 3 471 219 81 31 chr3 150675217 150675377 -67361781 - L1M1 LINE L1 -4227 3338 3171 813 148 0 0 chr3 150675389 150675511 -67361647 - AluJ SINE Alu -3 309 188 279 298 36 0 chr3 150675511 150675595 -67361563 + MER52A LTR ERV1 3 89 -1666 * 5139 182 57 133 chr3 150675568 150677278 -67359880 + MER52A LTR ERV1 197 1747 -8 1190 195 0 5 chr3 150677280 150677480 -67359678 - AluJ SINE Alu -113 199 1 1445 207 49 83 chr3 150677480 150677988 -67359170 - L1M1 LINE L1 -4391 3174 2684 2333 87 53 3 chr3 150677989 150678310 -67358848 - L1PA14 LINE L1 -17 6144 5808 4847 184 40 3 chr3 150678459 150679365 -67357793 + L1M3f LINE L1 14 952 -4376 583 242 45 15 chr3 150679386 150679584 -67357574 - L1 LINE L1 -2610 3536 3333 1619 137 50 50 chr3 150679659 150679958 -67357200 - AluSx SINE Alu -13 299 1 2000 182 65 19 chr3 150680046 150680519 -67356639 + L1M3f LINE L1 971 1465 -4863 974 191 43 5 chr3 150680518 150680727 -67356431 + L1P LINE L1 5048 5264 -882 * 1305 216 58 45 chr3 150681041 150681420 -67355738 + MER67C LTR ERV1 6 389 -321 1101 162 14 28 chr3 150681417 150681633 -67355525 + MER67C LTR ERV1 498 710 0 * 31 82 0 0 chr3 150681707 150681780 -67355378 + AT_rich Low_complexity Low_complexity 1 73 0 310 252 8 126 chr3 150681871 150681990 -67355168 + MIR SINE MIR 9 113 -149 3067 202 34 30 chr3 150682181 150682826 -67354332 + MER82 DNA MER2_type 1 648 -5 218 280 61 15 chr3 150682960 150683092 -67354066 + L2 LINE L2 2364 2501 -813 329 208 52 0 chr3 150683530 150683607 -67353551 + MIR SINE MIR 181 261 -1 2267 77 13 52 chr3 150684150 150684460 -67352698 + AluSg SINE Alu 5 302 -8 955 117 28 21 chr3 150684460 150684605 -67352553 + MER44D DNA MER2_type 588 605 0 248 136 153 17 chr3 150684614 150684673 -67352485 + LTR33 LTR ERVL 442 508 -13 615 211 1 1 chr3 150684880 150685008 -67352150 - L1MB7 LINE L1 -205 5959 5832 1253 177 45 0 chr3 150685171 150685391 -67351767 + MER46A DNA MER2_type 5 234 -2 1685 145 91 0 chr3 150685426 150685723 -67351435 - MER33 DNA MER1_type 0 324 1 717 165 79 17 chr3 150686408 150686604 -67350554 - L1MB3 LINE L1 -2 6181 5978 857 180 0 0 chr3 150687230 150687358 -67349800 + FLAM_A SINE Alu 1 128 -5 838 157 78 66 chr3 150687456 150687492 -67349666 - AluJb SINE Alu -144 168 134 207 0 0 0 chr3 150687492 150687515 -67349643 + (TG)n Simple_repeat Simple_repeat 2 24 0 838 157 78 66 chr3 150687515 150687644 -67349514 - AluJb SINE Alu -178 134 1 1539 120 5 0 chr3 150688223 150688440 -67348718 - AluSg/x SINE Alu 0 310 93 9662 168 26 15 chr3 150690262 150691939 -67345219 + L1M1 LINE L1 19 1714 -5851 701 157 0 0 chr3 150691953 150692061 -67345097 + L1M1 LINE L1 1610 1717 -5848 6358 214 58 53 chr3 150692097 150693267 -67343891 + L1M1 LINE L1 3264 4427 -3138 3556 124 14 6 chr3 150693267 150693776 -67343382 + MER75 DNA T2_type 1 513 -1 6358 214 58 53 chr3 150693776 150694366 -67342792 + L1M1 LINE L1 4427 5013 -2552 1310 133 0 5 chr3 150694366 150694554 -67342604 + AluSx SINE Alu 1 187 -125 6358 214 58 53 chr3 150694554 150695182 -67341976 + L1M1 LINE L1 5013 5740 -1825 1041 92 0 0 chr3 150695191 150695321 -67341837 + AluY SINE Alu 2 131 -180 6629 81 23 47 chr3 150695425 150696383 -67340775 + SVA Other Other 452 1386 0 1185 55 6 6 chr3 150696384 150696547 -67340611 + L1P LINE L1 3072 3234 -2912 609 196 29 22 chr3 150697758 150697896 -67339262 - MLT2B1 LTR ERVL -52 468 330 32 57 0 0 chr3 150698024 150698077 -67339081 + AT_rich Low_complexity Low_complexity 1 53 0 22 0 0 0 chr3 150698091 150698113 -67339045 + AT_rich Low_complexity Low_complexity 1 22 0 2281 103 0 3 chr3 150698210 150698512 -67338646 + AluY SINE Alu 1 301 -10 779 162 0 8 chr3 150698842 150698959 -67338199 + FLAM_C SINE Alu 7 122 -21 263 297 0 0 chr3 150700104 150700168 -67336990 + (TA)n Simple_repeat Simple_repeat 1 64 0 2565 61 0 0 chr3 150700181 150700477 -67336681 - AluY SINE Alu -15 296 1 4725 121 21 16 chr3 150701018 150701548 -67335610 + L1PBa LINE L1 1383 1920 -4943 2304 106 3 0 chr3 150701548 150701851 -67335307 - AluSp SINE Alu -9 304 1 4725 121 21 16 chr3 150701851 150702119 -67335039 + L1PBa LINE L1 1920 2185 -4678 255 233 68 0 chr3 150703681 150703754 -67333404 - MIR SINE MIR -72 190 113 1974 122 13 10 chr3 150705094 150705398 -67331760 + AluSx SINE Alu 1 305 -7 1232 172 5 18 chr3 150705711 150705932 -67331226 + AluJo SINE Alu 85 302 -10 1185 208 19 57 chr3 150705962 150706328 -67330830 + L1MC4 LINE L1 7688 8039 -3 459 333 34 34 chr3 150706431 150706695 -67330463 - MARNA DNA Mariner -202 384 121 213 94 0 0 chr3 150706939 150706971 -67330187 + (T)n Simple_repeat Simple_repeat 1 32 0 313 238 56 94 chr3 150707566 150707688 -67329470 - MIR SINE MIR -33 229 113 694 158 0 36 chr3 150707688 150707827 -67329331 - L1MA8 LINE L1 -2 6289 6156 313 238 56 94 chr3 150707827 150707864 -67329294 - MIR SINE MIR -149 113 76 343 273 71 63 chr3 150708037 150708248 -67328910 - MIR SINE MIR -26 236 16 217 303 198 46 chr3 150708335 150708770 -67328388 + L2 LINE L2 1968 2468 -846 187 280 40 0 chr3 150708768 150708818 -67328340 - MIR3 SINE MIR -154 54 3 * 1288 117 0 41 chr3 150708917 150709113 -67328045 - AluSg/x SINE Alu 0 310 123 2239 102 10 0 chr3 150709729 150710023 -67327135 + AluSg SINE Alu 1 297 -13 22 0 0 0 chr3 150710036 150710058 -67327100 + AT_rich Low_complexity Low_complexity 1 22 0 2068 125 0 7 chr3 150710956 150711253 -67325905 - AluSx SINE Alu -17 295 1 311 179 15 0 chr3 150711331 150711398 -67325760 + (TATG)n Simple_repeat Simple_repeat 1 68 0 277 286 26 0 chr3 150712333 150712410 -67324748 + L1ME3A LINE L1 6031 6109 -61 2346 78 0 7 chr3 150712410 150712706 -67324452 + AluY SINE Alu 1 294 -17 232 233 233 0 chr3 150712743 150712816 -67324342 - MIR SINE MIR -157 105 16 553 215 15 15 chr3 150713396 150713526 -67323632 - L1MA10 LINE L1 -14 6320 6191 1946 217 105 50 chr3 150713526 150715361 -67321797 + L1ME1 LINE L1 4066 6090 -76 2176 104 14 0 chr3 150715361 150715650 -67321508 + AluSx SINE Alu 1 293 -19 1946 217 105 50 chr3 150715650 150715705 -67321453 + L1ME1 LINE L1 6090 6141 -25 3602 231 72 56 chr3 150715722 150717044 -67320114 - L1M4 LINE L1 -1518 4628 3280 2193 105 3 0 chr3 150717044 150717339 -67319819 - AluSx SINE Alu -16 296 1 3602 231 72 56 chr3 150717339 150717451 -67319707 - L1M4 LINE L1 -2866 3280 3171 2272 93 0 7 chr3 150717467 150717756 -67319402 - AluSq SINE Alu -26 287 1 1552 276 168 3 chr3 150717756 150718369 -67318789 - L2 LINE L2 -599 2715 2002 210 338 0 14 chr3 150718369 150718440 -67318718 + L2 LINE L2 2985 3054 -218 2133 125 10 0 chr3 150718676 150718981 -67318177 + AluSg SINE Alu 1 308 -2 2201 129 0 0 chr3 150720305 150720615 -67316543 - AluSq SINE Alu -3 310 1 183 80 0 0 chr3 150721958 150721983 -67315175 + (A)n Simple_repeat Simple_repeat 1 25 0 2273 112 3 3 chr3 150726609 150726921 -67310237 - AluSx SINE Alu 0 312 1 572 219 27 152 chr3 150727292 150727516 -67309642 - MIR SINE MIR -17 245 50 329 351 15 0 chr3 150729214 150729345 -67307813 - MIR SINE MIR 0 262 130 221 212 169 37 chr3 150729479 150729609 -67307549 - MIR SINE MIR -26 236 88 261 236 34 45 chr3 150729890 150729979 -67307179 - MER5A DNA MER1_type -37 152 65 231 320 72 10 chr3 150730831 150730928 -67306230 + MLT1K LTR MaLR 24 126 -462 450 309 195 20 chr3 150733067 150733569 -67303589 - L2 LINE L2 -1117 2197 1608 660 186 105 85 chr3 150734279 150734439 -67302719 + L1M1 LINE L1 2771 2926 -4640 1920 125 47 27 chr3 150734439 150734735 -67302423 + AluSx SINE Alu 1 302 -10 660 186 105 85 chr3 150734735 150734817 -67302341 + L1M1 LINE L1 2926 3238 -4328 1819 141 0 11 chr3 150734819 150735095 -67302063 + AluSx SINE Alu 1 273 -39 537 84 28 0 chr3 150735095 150735166 -67301992 + Alu SINE Alu 224 296 -16 2079 110 45 0 chr3 150735166 150735457 -67301701 + AluSp SINE Alu 1 304 -9 14310 165 79 14 chr3 150735458 150738525 -67298633 + L1M1 LINE L1 3628 6905 -743 2150 97 38 3 chr3 150738529 150738819 -67298339 + AluSg SINE Alu 1 300 -10 273 331 162 45 chr3 150739511 150739777 -67297381 + L2 LINE L2 2968 3264 -8 395 309 109 60 chr3 150740848 150741197 -67295961 + L2 LINE L2 518 883 -2431 260 308 50 25 chr3 150741355 150741475 -67295683 + L2 LINE L2 1295 1417 -1897 842 335 93 12 chr3 150741476 150741970 -67295188 + L2 LINE L2 2736 3267 -5 1114 290 225 41 chr3 150742040 150742113 -67295045 + L2 LINE L2 1705 1763 -1550 2028 116 10 3 chr3 150742113 150742406 -67294752 - AluSx SINE Alu -17 295 1 1114 290 225 41 chr3 150742406 150742725 -67294433 + L2 LINE L2 1763 2022 -1291 586 267 11 22 chr3 150742725 150742905 -67294253 - MER5B DNA MER1_type 0 178 1 1114 290 225 41 chr3 150742905 150743636 -67293522 + L2 LINE L2 2022 3109 -204 312 185 0 160 chr3 150744662 150744781 -67292377 + MER102b DNA MER1_type 233 332 -9 2027 110 7 3 chr3 150744798 150745098 -67292060 - AluSg SINE Alu -9 301 1 804 141 169 0 chr3 150745756 150745898 -67291260 + MER5B DNA MER1_type 1 166 -12 502 219 18 35 chr3 150745914 150746028 -67291130 - MER5A DNA MER1_type 0 189 78 236 305 32 21 chr3 150746461 150746556 -67290602 - L2 LINE L2 -619 2695 2600 304 331 55 25 chr3 150747135 150747298 -67289860 - L2 LINE L2 0 3272 3105 1536 290 57 15 chr3 150747595 150748143 -67289015 - L2 LINE L2 -3 3310 2732 2109 116 3 0 chr3 150748714 150749015 -67288143 + AluSc SINE Alu 1 302 -7 183 42 0 0 chr3 150749068 150749092 -67288066 + (CA)n Simple_repeat Simple_repeat 2 25 0 765 262 67 0 chr3 150749154 150749364 -67287794 + MER58A DNA MER1_type 1 224 0 812 139 0 0 chr3 150749377 150749492 -67287666 + AluSq/x SINE Alu 2 116 -197 4397 138 45 14 chr3 150749492 150749512 -67287646 + L1MA4 LINE L1 5472 5490 -810 2102 113 0 6 chr3 150749512 150749823 -67287335 + AluSg SINE Alu 1 309 -1 4397 138 45 14 chr3 150749823 150750604 -67286554 + L1MA4 LINE L1 5490 6298 -2 2201 78 0 3 chr3 150752223 150752532 -67284626 - AluY SINE Alu 0 308 1 349 330 79 31 chr3 150752687 150752978 -67284180 - L2 LINE L2 0 3313 3009 2194 88 0 0 chr3 150753005 150753315 -67283843 - AluSq SINE Alu 0 310 1 1427 187 4 8 chr3 150755317 150755584 -67281574 + AluJb SINE Alu 1 266 -46 572 148 40 0 chr3 150757337 150757438 -67279720 + MSTD LTR MaLR 289 393 -3 403 299 23 81 chr3 150757479 150757598 -67279560 - MIR SINE MIR -79 183 76 1325 189 73 51 chr3 150757598 150757952 -67279206 - MLT1A1 LTR MaLR -3 362 1 403 299 23 81 chr3 150757952 150758006 -67279152 - MIR SINE MIR -186 76 20 336 24 0 0 chr3 150758886 150758927 -67278231 + (TG)n Simple_repeat Simple_repeat 1 41 0 218 293 17 0 chr3 150759164 150759222 -67277936 + MIR SINE MIR 203 261 -1 193 314 0 0 chr3 150759222 150759273 -67277885 + MIR SINE MIR 199 249 -13 1929 133 37 0 chr3 150759535 150759829 -67277329 + AluSx SINE Alu 1 305 -7 1722 262 69 45 chr3 150760263 150760840 -67276318 + MLT1E LTR MaLR 2 592 -1 423 0 0 0 chr3 150761094 150761141 -67276017 + (CA)n Simple_repeat Simple_repeat 2 48 0 2179 105 3 16 chr3 150761795 150762108 -67275050 - AluSx SINE Alu -3 309 1 289 169 0 0 chr3 150762133 150762192 -67274966 - L1MC4 LINE L1 0 8042 7984 21 0 0 0 chr3 150762196 150762217 -67274941 + AT_rich Low_complexity Low_complexity 1 21 0 1439 241 73 54 chr3 150762270 150762806 -67274352 - L1MC4 LINE L1 -235 7807 7262 2119 113 0 3 chr3 150762833 150763135 -67274023 - AluSx SINE Alu -11 301 1 249 169 7 2 chr3 150763258 150763318 -67273840 + Alu SINE Alu 1 38 -270 1897 108 39 11 chr3 150764936 150765215 -67271943 + MER1B DNA MER1_type 53 339 0 259 253 201 9 chr3 150765597 150765705 -67271453 + MIR SINE MIR 56 182 -60 225 305 34 0 chr3 150766507 150766566 -67270592 - L2 LINE L2 -217 3055 2995 216 179 0 0 chr3 150767488 150767527 -67269631 + MIR SINE MIR 80 118 -144 274 213 294 22 chr3 150768557 150768693 -67268465 - MIR SINE MIR -66 196 24 331 200 143 19 chr3 150769407 150769512 -67267646 + MIR SINE MIR 29 146 -116 194 283 0 0 chr3 150769965 150770018 -67267140 - L2 LINE L2 0 3272 3220 622 208 117 7 chr3 150770060 150770214 -67266944 - MIR SINE MIR -86 176 6 2000 112 0 20 chr3 150771058 150771353 -67265805 - AluJb SINE Alu -23 289 1 1961 116 4 0 chr3 150771508 150771784 -67265374 - AluSx SINE Alu -35 277 1 1166 241 24 14 chr3 150771791 150772086 -67265072 - L1MC4a LINE L1 -1923 5885 5588 254 254 51 65 chr3 150772548 150772686 -67264472 + MIR3 SINE MIR 64 199 -9 226 242 144 113 chr3 150774231 150774487 -67262671 + L1MC/D LINE L1 5587 5850 -1958 1892 157 151 21 chr3 150775086 150775463 -67261695 - MSTB LTR MaLR 0 426 1 424 268 38 32 chr3 150775493 150775674 -67261484 + MER20B DNA MER1_type 32 217 -2 214 286 50 8 chr3 150775691 150775810 -67261348 - L3 LINE CR1 -108 1469 1346 313 297 234 23 chr3 150777992 150778171 -67258987 - MIR SINE MIR -27 191 12 205 267 0 67 chr3 150778894 150778954 -67258204 - MIR SINE MIR -93 115 60 1532 266 83 40 chr3 150779593 150780397 -67256761 - L1MEd LINE L1 -4942 1177 339 425 232 136 32 chr3 150780481 150780636 -67256522 - L1MEd LINE L1 -5947 172 2 180 222 89 0 chr3 150781453 150781498 -67255660 + MIR3 SINE MIR 134 182 -26 258 255 181 0 chr3 150781557 150781651 -67255507 - MIR SINE MIR -3 259 149 390 292 68 37 chr3 150782771 150782932 -67254226 - L2 LINE L2 -2 3270 3105 216 250 133 0 chr3 150783527 150783587 -67253571 - L2 LINE L2 -4 3268 3201 2089 90 14 3 chr3 150784033 150784321 -67252837 + AluSp SINE Alu 1 291 -22 22 56 0 0 chr3 150785266 150785302 -67251856 + AT_rich Low_complexity Low_complexity 1 36 0 474 209 198 51 chr3 150787825 150788002 -67249156 + LTR41 LTR ERVL 1 203 -570 260 229 22 141 chr3 150788141 150788368 -67248790 + LTR41 LTR ERVL 556 755 -18 420 258 159 54 chr3 150788386 150788681 -67248477 + L1MEc LINE L1 2073 2398 -3998 2000 106 0 17 chr3 150788914 150789207 -67247951 - AluSc SINE Alu -21 288 1 351 218 78 131 chr3 150789727 150789855 -67247303 + MIR SINE MIR 13 127 -135 687 180 23 16 chr3 150789855 150789983 -67247175 - FLAM_A SINE Alu -4 129 1 351 218 78 131 chr3 150789983 150790060 -67247098 + MIR SINE MIR 127 207 -55 2287 70 0 22 chr3 150790090 150790403 -67246755 + AluY SINE Alu 1 306 -5 442 186 29 20 chr3 150790503 150790605 -67246553 - L1MD2 LINE L1 -488 5871 5769 * 2239 239 98 11 chr3 150790597 150791291 -67245867 - L1MD2 LINE L1 -1146 5000 4247 180 178 133 0 chr3 150791507 150791552 -67245606 + L2 LINE L2 1222 1272 -2042 2060 228 39 20 chr3 150791623 150792132 -67245026 + LTR40a LTR ERVL 1 519 0 1841 127 22 11 chr3 150792865 150793133 -67244025 - AluJo SINE Alu -11 301 31 1488 236 107 48 chr3 150793133 150793738 -67243420 - LTR9B LTR ERV1 0 644 4 1985 130 27 13 chr3 150793917 150794216 -67242942 - AluSx SINE Alu -9 303 1 2422 166 38 19 chr3 150794505 150794928 -67242230 - MSTB1 LTR MaLR -1 431 1 241 299 28 42 chr3 150796145 150796289 -67240869 + LTR16C LTR ERVL 350 491 0 363 318 65 30 chr3 150796402 150796603 -67240555 - L1ME3A LINE L1 -226 5944 5737 2303 67 3 17 chr3 150796603 150796900 -67240258 - AluY SINE Alu -7 304 12 207 88 0 0 chr3 150797031 150797065 -67240093 + (A)n Simple_repeat Simple_repeat 1 34 0 1988 127 0 31 chr3 150797374 150797696 -67239462 - AluSx SINE Alu 0 312 1 1530 160 46 4 chr3 150797717 150797980 -67239178 - L1MC1 LINE L1 -16 6317 6044 779 177 71 120 chr3 150797991 150798274 -67238884 + LTR41 LTR ERVL 499 767 -6 344 175 0 0 chr3 150798284 150798341 -67238817 - L1ME3A LINE L1 -604 5562 5506 337 253 67 67 chr3 150798344 150798629 -67238529 - L1MCc LINE L1 -4975 1448 1164 1916 166 0 10 chr3 150798913 150799214 -67237944 - AluJb SINE Alu -14 298 1 371 250 11 36 chr3 150799640 150799824 -67237334 - MER112 DNA MER1_type -1 259 1 1148 176 215 33 chr3 150800078 150800413 -67236745 - MSTD LTR MaLR 0 396 1 2158 116 3 0 chr3 150800974 150801285 -67235873 - AluSq SINE Alu 0 312 1 287 277 152 112 chr3 150801605 150801732 -67235426 + L2 LINE L2 2882 3002 -270 2261 102 0 10 chr3 150801732 150802027 -67235131 - AluSg SINE Alu -18 292 1 287 277 152 112 chr3 150802027 150802274 -67234884 + L2 LINE L2 3002 3271 -1 1857 146 42 29 chr3 150802438 150802746 -67234412 + AluJo SINE Alu 1 312 0 3850 134 20 57 chr3 150803452 150804169 -67232989 + L1MB7 LINE L1 5424 6112 -72 2309 102 0 0 chr3 150804169 150804463 -67232695 - AluSx SINE Alu -18 294 1 3850 134 20 57 chr3 150804463 150804512 -67232646 + L1MB7 LINE L1 6112 6161 -23 28 0 0 0 chr3 150805235 150805263 -67231895 + GC_rich Low_complexity Low_complexity 1 28 0 224 226 19 0 chr3 150805639 150805692 -67231466 + (TGGG)n Simple_repeat Simple_repeat 1 54 0 196 266 118 101 chr3 150805888 150806057 -67231101 - L2 LINE L2 -85 3187 3016 1544 125 42 0 chr3 150807320 150807536 -67229622 + AluJb SINE Alu 80 304 -8 229 130 65 0 chr3 150808169 150808215 -67228943 - MLT1L LTR MaLR -4 611 563 25 0 0 0 chr3 150809021 150809046 -67228112 + AT_rich Low_complexity Low_complexity 1 25 0 242 267 154 86 chr3 150809941 150810233 -67226925 - L3 LINE CR1 -53 1524 1213 249 258 0 0 chr3 150810233 150810295 -67226863 + (TCCA)n Simple_repeat Simple_repeat 3 64 0 425 330 77 27 chr3 150810305 150810526 -67226632 - MIR SINE MIR -30 232 1 1730 152 11 25 chr3 150811378 150811654 -67225504 - AluJo SINE Alu -38 274 3 2117 134 10 0 chr3 150812220 150812518 -67224640 + AluSx SINE Alu 1 301 -11 2152 125 7 7 chr3 150814626 150814929 -67222229 + AluSx SINE Alu 3 305 -7 526 250 9 9 chr3 150815150 150815266 -67221892 - L2 LINE L2 -16 3256 3141 192 204 20 20 chr3 150815540 150815589 -67221569 - MIR SINE MIR -145 117 69 199 372 83 13 chr3 150817523 150817679 -67219479 + MIR SINE MIR 84 250 -12 262 172 247 11 chr3 150818861 150818954 -67218204 + MIR SINE MIR 38 152 -110 232 288 14 41 chr3 150819316 150819389 -67217769 - L2 LINE L2 -9 3304 3234 456 321 53 81 chr3 150819416 150819600 -67217558 + L2 LINE L2 2809 2997 -275 2091 109 0 78 chr3 150819600 150819931 -67217227 - AluSg SINE Alu -5 305 1 456 321 53 81 chr3 150819931 150820216 -67216942 + L2 LINE L2 2997 3265 -7 478 277 126 13 chr3 150820907 150821066 -67216092 - MIR SINE MIR -2 260 84 797 221 12 0 chr3 150821601 150821764 -67215394 + MIR SINE MIR 24 188 -74 185 161 0 129 chr3 150822117 150822179 -67214979 + MIR3 SINE MIR 1 54 -154 441 272 9 0 chr3 150823864 150823978 -67213180 - MIR SINE MIR -118 144 30 215 369 63 9 chr3 150824759 150824870 -67212288 - L2 LINE L2 -23 3249 3133 330 98 0 0 chr3 150825340 150825391 -67211767 + (TG)n Simple_repeat Simple_repeat 1 51 0 388 253 58 39 chr3 150825440 150825594 -67211564 - MIR SINE MIR -39 223 67 310 272 62 0 chr3 150826253 150826334 -67210824 - L2 LINE L2 -18 3254 3169 1879 132 35 10 chr3 150827108 150827397 -67209761 + AluSg SINE Alu 1 296 -14 317 217 36 36 chr3 150828129 150828212 -67208946 - L1ME LINE L1 -439 5751 5669 367 299 17 17 chr3 150828423 150828540 -67208618 - MIR3 SINE MIR -1 207 91 1010 158 99 15 chr3 150829087 150829289 -67207869 - MER20 DNA MER1_type 0 219 1 190 162 0 27 chr3 150829416 150829453 -67207705 - L3b LINE CR1 -5 1578 1543 257 221 73 0 chr3 150829471 150829539 -67207619 - MER117 DNA MER1_type -65 132 60 282 219 109 0 chr3 150829685 150829749 -67207409 + L2 LINE L2 3239 3309 -4 296 214 94 26 chr3 150829753 150829870 -67207288 + L1ME4a LINE L1 5997 6121 0 627 218 92 0 chr3 150830585 150830727 -67206431 + MER5A DNA MER1_type 4 158 -31 4477 211 53 27 chr3 150830729 150830948 -67206210 - L1ME LINE L1 -1410 4805 4593 321 47 0 0 chr3 150830948 150830991 -67206167 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 4477 211 53 27 chr3 150830991 150831028 -67206130 - L1ME LINE L1 -1622 4593 4558 183 42 0 0 chr3 150831028 150831052 -67206106 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2079 93 0 45 chr3 150831059 150831349 -67205809 - AluSc SINE Alu -32 277 1 4477 211 53 27 chr3 150831349 150831964 -67205194 - L1ME LINE L1 -1662 4553 3883 1688 187 3 20 chr3 150831964 150832269 -67204889 - AluJo SINE Alu -12 300 1 4477 211 53 27 chr3 150832269 150832593 -67204565 - L1ME LINE L1 -2332 3883 3569 752 138 0 0 chr3 150832594 150832703 -67204455 - AluJb SINE Alu -14 298 190 485 183 0 0 chr3 150832703 150832785 -67204373 - L1ME LINE L1 -6276 120 39 1646 137 123 14 chr3 150832818 150833095 -67204063 + AluSx SINE Alu 1 307 -5 275 228 0 13 chr3 150833095 150833174 -67203984 + L1MB7 LINE L1 6088 6165 -19 1121 269 103 16 chr3 150833229 150833608 -67203550 + L2 LINE L2 2902 3313 0 373 238 0 0 chr3 150833783 150833867 -67203291 + MER103 DNA DNA 20 103 -63 196 262 0 0 chr3 150833991 150834033 -67203125 + L2 LINE L2 3257 3298 -15 1714 84 18 13 chr3 150834407 150834633 -67202525 + AluSg SINE Alu 1 227 -83 330 287 43 9 chr3 150834931 150835046 -67202112 - MIR SINE MIR -28 234 116 1177 148 71 0 chr3 150835792 150836002 -67201156 - L1MB3 LINE L1 0 6183 5959 5665 120 48 28 chr3 150836005 150836440 -67200718 - L1MA4 LINE L1 -2 6298 5873 2324 96 23 0 chr3 150836440 150836741 -67200417 - AluSq SINE Alu -5 308 1 5665 120 48 28 chr3 150836741 150837330 -67199828 - L1MA4 LINE L1 -427 5873 5254 1751 142 42 53 chr3 150837335 150837398 -67199760 - L1MB3 LINE L1 -157 6026 5964 2341 110 0 0 chr3 150837398 150837699 -67199459 - AluSx SINE Alu -11 301 1 1751 142 42 53 chr3 150837699 150837844 -67199314 - L1MB3 LINE L1 -219 5964 5819 2419 80 0 16 chr3 150837844 150838157 -67199001 - AluSc SINE Alu -1 308 1 1751 142 42 53 chr3 150838157 150838327 -67198831 - L1MB3 LINE L1 -364 5819 5651 329 298 73 8 chr3 150838379 150838503 -67198655 - MIR SINE MIR -55 153 22 225 317 97 32 chr3 150839836 150840022 -67197136 - L3 LINE CR1 -656 921 724 354 294 108 0 chr3 150840215 150840317 -67196841 + L2 LINE L2 3154 3266 -6 242 153 34 51 chr3 150840331 150840390 -67196768 + L2 LINE L2 3212 3269 -3 891 239 0 0 chr3 150840416 150840579 -67196579 - FRAM SINE Alu -2 164 2 2851 233 145 53 chr3 150840777 150842243 -67194915 - L2 LINE L2 -4 3309 1979 1909 131 76 3 chr3 150842243 150842533 -67194625 - AluJb SINE Alu -1 311 1 2851 233 145 53 chr3 150842533 150842585 -67194573 - L2 LINE L2 -1334 1979 1933 2235 104 3 0 chr3 150842585 150842901 -67194257 - AluSx SINE Alu 0 317 1 2851 233 145 53 chr3 150842901 150843139 -67194019 - L2 LINE L2 -1380 1933 1454 2519 172 40 85 chr3 150843160 150843570 -67193588 - L1MB7 LINE L1 -16 6168 5794 2349 94 3 0 chr3 150843570 150843869 -67193289 - AluSq SINE Alu -13 300 1 2519 172 40 85 chr3 150843869 150844080 -67193078 - L1MB7 LINE L1 -390 5794 5575 466 282 192 12 chr3 150844084 150844407 -67192751 - L2 LINE L2 -1822 1492 1112 454 280 26 10 chr3 150844520 150844660 -67192498 + MIR SINE MIR 3 143 -65 189 141 228 43 chr3 150845401 150845493 -67191665 + MIR SINE MIR 103 211 -51 699 100 0 0 chr3 150845504 150845594 -67191564 + AluS SINE Alu 2 91 -222 205 200 0 0 chr3 150845719 150845759 -67191399 + A-rich Low_complexity Low_complexity 1 40 0 2306 91 7 0 chr3 150845861 150846157 -67191001 - AluSq SINE Alu -11 302 5 369 342 40 0 chr3 150846691 150846840 -67190318 + MIR SINE MIR 73 227 -35 224 191 0 45 chr3 150847056 150847145 -67190013 + GA-rich Low_complexity Low_complexity 1 85 0 182 119 48 0 chr3 150847421 150847463 -67189695 + (TCTG)n Simple_repeat Simple_repeat 2 45 0 868 291 155 38 chr3 150847833 150848458 -67188700 - L1MEc LINE L1 -2660 3555 3004 1532 159 113 12 chr3 150848458 150848785 -67188373 + MER46B DNA MER2_type 1 235 -1 868 291 155 38 chr3 150848785 150848879 -67188279 - L1MEc LINE L1 -3211 3004 2922 2481 86 0 0 chr3 150848879 150849181 -67187977 + AluSc SINE Alu 1 302 -7 868 291 155 38 chr3 150849181 150849235 -67187923 - L1MEc LINE L1 -3293 2922 2680 821 196 12 17 chr3 150849236 150849409 -67187749 - AluJo SINE Alu -19 293 122 669 317 122 25 chr3 150849445 150849982 -67187176 - L1MEc LINE L1 -3568 2647 2102 730 171 0 8 chr3 150850264 150850381 -67186777 - AluJo SINE Alu -190 122 7 2435 87 0 3 chr3 150850711 150851010 -67186148 - AluSq SINE Alu -13 300 3 235 250 75 0 chr3 150851262 150851342 -67185816 - MIR3 SINE MIR -14 194 109 1300 255 145 41 chr3 150851542 150852049 -67185109 + L2 LINE L2 2195 2648 -665 2379 97 13 0 chr3 150852049 150852358 -67184800 - AluSq SINE Alu 0 313 1 1300 255 145 41 chr3 150852358 150852872 -67184286 + L2 LINE L2 2648 3311 -2 445 199 307 0 chr3 150853233 150853399 -67183759 - MIR SINE MIR -32 230 14 223 282 68 10 chr3 150853910 150854013 -67183145 - MIR SINE MIR -123 139 31 273 57 0 0 chr3 150854558 150854593 -67182565 + (TC)n Simple_repeat Simple_repeat 1 35 0 235 308 75 0 chr3 150854893 150855000 -67182158 + L1ME LINE L1 5348 5462 -2346 436 216 119 15 chr3 150856160 150856294 -67180864 + MIR SINE MIR 45 192 -70 730 175 0 70 chr3 150858522 150858665 -67178493 + FLAM_C SINE Alu 3 135 -8 24 67 0 0 chr3 150859714 150859759 -67177399 + AT_rich Low_complexity Low_complexity 1 45 0 284 330 96 38 chr3 150862746 150862955 -67174203 + MIR SINE MIR 2 222 -40 471 218 11 0 chr3 150863300 150863387 -67173771 - L2 LINE L2 0 3313 3226 922 209 134 11 chr3 150863422 150863690 -67173468 - MLT1D LTR MaLR 0 505 205 4047 235 128 25 chr3 150863705 150864053 -67173105 + L2 LINE L2 1366 1677 -1637 2417 104 0 7 chr3 150864053 150864362 -67172796 - AluSx SINE Alu -5 307 1 4047 235 128 25 chr3 150864362 150865282 -67171876 + L2 LINE L2 1677 2764 -550 355 246 220 8 chr3 150865774 150865892 -67171266 + MER5A DNA MER1_type 33 175 -14 1024 180 22 0 chr3 150866556 150866739 -67170419 + MER5A DNA MER1_type 2 188 -1 3955 89 35 4 chr3 150866907 150867444 -67169714 - MER41A LTR ERV1 0 554 1 714 256 17 11 chr3 150868116 150868292 -67168866 - MER5B DNA MER1_type 0 178 2 743 197 0 0 chr3 150868898 150869025 -67168133 + FLAM_A SINE Alu 1 127 -6 528 218 36 0 chr3 150869257 150869367 -67167791 + MER81 DNA DNA 1 114 0 575 155 213 32 chr3 150869430 150869585 -67167573 - MER5A DNA MER1_type -2 187 5 499 290 184 14 chr3 150869665 150869872 -67167286 - MIR SINE MIR -6 256 15 473 271 84 30 chr3 150870522 150870672 -67166486 + MIR SINE MIR 41 206 -56 2094 151 33 0 chr3 150870672 150871009 -67166149 + MER7A DNA MER2_type 1 346 0 473 271 84 30 chr3 150871009 150871061 -67166097 + MIR SINE MIR 206 254 -8 346 294 89 0 chr3 150871486 150871632 -67165526 + L1ME LINE L1 5548 5706 -415 433 318 90 37 chr3 150871685 150872191 -67164967 - L1ME LINE L1 -527 5594 5055 1828 164 24 0 chr3 150872219 150872517 -67164641 - AluJo SINE Alu -7 305 1 299 273 27 27 chr3 150872525 150872635 -67164523 + MIR SINE MIR 125 234 -28 248 263 132 0 chr3 150872666 150872780 -67164378 - L1P LINE L1 -1134 5012 4884 1816 152 180 13 chr3 150873007 150873151 -67164007 - MER65C LTR ERV1 0 461 342 2056 138 0 3 chr3 150873151 150873434 -67163724 + AluJb SINE Alu 1 282 -30 1816 152 180 13 chr3 150873434 150873684 -67163474 - MER65C LTR ERV1 -119 342 1 576 246 56 0 chr3 150874434 150874576 -67162582 + MIR SINE MIR 71 220 -42 666 222 56 6 chr3 150875440 150875620 -67161538 + MER5A DNA MER1_type 1 189 0 318 106 0 0 chr3 150876020 150876067 -67161091 + (CA)n Simple_repeat Simple_repeat 2 48 0 2466 104 73 19 chr3 150876527 150876703 -67160455 - LTR56 LTR ERV1 0 445 280 4614 117 35 25 chr3 150876703 150877423 -67159735 + LTR8A LTR ERV1 1 727 0 2466 104 73 19 chr3 150877423 150877551 -67159607 - LTR56 LTR ERV1 -165 280 160 5563 127 32 24 chr3 150877551 150878111 -67159047 - MER4D LTR ERV1 0 903 331 2092 122 11 0 chr3 150878111 150878397 -67158761 + AluSq SINE Alu 3 291 -22 5563 127 32 24 chr3 150878397 150878731 -67158427 - MER4D LTR ERV1 -572 331 1 2466 104 73 19 chr3 150878731 150878847 -67158311 - LTR56 LTR ERV1 -285 160 1 1902 183 55 32 chr3 150878847 150879277 -67157881 + MLT1C LTR MaLR 28 467 0 604 319 61 47 chr3 150879277 150879309 -67157849 + L1M4 LINE L1 3345 3375 -2771 3044 156 136 25 chr3 150879309 150879963 -67157195 - LTR8A LTR ERV1 0 727 1 604 319 61 47 chr3 150879963 150880312 -67156846 + L1M4 LINE L1 3375 3734 -2412 2465 97 28 86 chr3 150880404 150880721 -67156437 + LTR23 LTR ERV1 1 285 -152 2297 71 0 0 chr3 150880721 150881049 -67156109 + AluY SINE Alu 1 328 0 2465 97 28 86 chr3 150881049 150881194 -67155964 + LTR23 LTR ERV1 285 437 0 2189 187 82 12 chr3 150881838 150882230 -67154928 + MLT2B1 LTR ERVL 1 435 -85 4074 100 11 0 chr3 150882230 150882778 -67154380 - MER41A LTR ERV1 0 554 1 2189 187 82 12 chr3 150882778 150882871 -67154287 + MLT2B1 LTR ERVL 435 520 0 2092 103 0 58 chr3 150882902 150883213 -67153945 + AluSx SINE Alu 1 293 -19 303 253 0 11 chr3 150883555 150883646 -67153512 + L1M4 LINE L1 3885 3974 -2172 1825 139 17 17 chr3 150883648 150884005 -67153153 + AluJb SINE Alu 1 312 0 2128 120 0 10 chr3 150884079 150884388 -67152770 - AluSc SINE Alu -3 306 1 312 269 74 60 chr3 150884403 150884552 -67152606 - L1ME4a LINE L1 -51 6070 5920 2294 97 0 3 chr3 150884598 150884897 -67152261 + AluSx SINE Alu 1 298 -14 1122 148 0 0 chr3 150884897 150885066 -67152092 + AluSc SINE Alu 132 300 -9 341 237 0 13 chr3 150885070 150885146 -67152012 - HAL1b LINE L1 -104 1244 1170 3025 242 69 18 chr3 150885168 150886208 -67150950 - L1M4 LINE L1 -2415 3731 2639 1138 165 57 13 chr3 150886208 150886438 -67150720 + L1MB3 LINE L1 5941 6180 -3 2352 117 0 0 chr3 150886496 150886805 -67150353 + AluSc SINE Alu 1 309 0 362 335 134 11 chr3 150886873 150887052 -67150106 - MIR SINE MIR -54 208 8 2095 128 7 7 chr3 150887216 150887520 -67149638 + AluSx SINE Alu 3 306 -6 21 0 0 0 chr3 150887593 150887614 -67149544 + AT_rich Low_complexity Low_complexity 1 21 0 2278 107 0 10 chr3 150887614 150887923 -67149235 + AluSq SINE Alu 1 306 -7 2374 77 0 3 chr3 150887923 150888222 -67148936 + AluY SINE Alu 1 298 -13 588 241 53 87 chr3 150888269 150888510 -67148648 + L2 LINE L2 3046 3279 -34 1682 209 97 30 chr3 150888510 150888945 -67148213 - MLT1C LTR MaLR 0 467 4 588 241 53 87 chr3 150888945 150888968 -67148190 + L2 LINE L2 3279 3301 -12 215 327 50 30 chr3 150889102 150889203 -67147955 + L3 LINE CR1 998 1100 -477 2050 156 13 0 chr3 150889270 150889578 -67147580 + AluSx SINE Alu 1 312 0 428 301 48 0 chr3 150889642 150889745 -67147413 - L2 LINE L2 -334 2979 2872 459 248 36 0 chr3 150890262 150890399 -67146759 + MER103 DNA DNA 1 142 -24 347 308 8 0 chr3 150890570 150890690 -67146468 + GA-rich Low_complexity Low_complexity 2 122 0 22 0 0 0 chr3 150891602 150891624 -67145534 + GC_rich Low_complexity Low_complexity 1 22 0 1653 163 59 4 chr3 150893160 150893492 -67143666 - MLT1B LTR MaLR -1 373 39 220 287 241 9 chr3 150895389 150895497 -67141661 + MER91A DNA MER1_type 61 193 -3 300 321 73 0 chr3 150895643 150895752 -67141406 + MIR3 SINE MIR 86 202 -6 193 258 90 11 chr3 150896994 150897083 -67140075 + MIR3 SINE MIR 88 183 -25 341 280 54 119 chr3 150897844 150898105 -67139053 - L2 LINE L2 -4 3268 3025 354 231 108 0 chr3 150899132 150899262 -67137896 - L1ME4a LINE L1 0 6121 5978 311 301 196 20 chr3 150899299 150899452 -67137706 - L1ME4a LINE L1 -217 5904 5725 440 355 92 28 chr3 150899534 150899785 -67137373 + L2 LINE L2 2999 3265 -7 256 189 68 14 chr3 150899785 150899859 -67137299 - L1ME4a LINE L1 -410 5711 5634 222 219 0 0 chr3 150900702 150900766 -67136392 + (TG)n Simple_repeat Simple_repeat 1 64 0 538 281 13 13 chr3 150902009 150902162 -67134996 + MER5A DNA MER1_type 37 189 0 329 279 73 14 chr3 150902749 150902892 -67134266 - MIR SINE MIR -20 242 90 283 183 204 21 chr3 150903030 150903123 -67134035 + MIR SINE MIR 82 191 -71 509 236 153 13 chr3 150903291 150903448 -67133710 + MIR SINE MIR 13 191 -71 374 211 125 79 chr3 150903457 150903609 -67133549 + L1M4 LINE L1 2262 2420 -3726 800 167 0 15 chr3 150903619 150903751 -67133407 + AluJo/FLAM SINE Alu 3 132 -180 1512 204 44 0 chr3 150903753 150903874 -67133284 + AluJb SINE Alu 1 115 -197 198 0 0 0 chr3 150903874 150903896 -67133262 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1512 204 44 0 chr3 150903896 150904049 -67133109 + AluJb SINE Alu 115 287 -25 514 294 142 52 chr3 150904247 150904635 -67132523 + L1M4 LINE L1 2699 3121 -3025 289 297 95 68 chr3 150904835 150904995 -67132163 + L1M4 LINE L1 4563 4717 -1429 2346 97 7 3 chr3 150904995 150905303 -67131855 + AluSq SINE Alu 1 309 -4 289 297 95 68 chr3 150905303 150905701 -67131457 + L1M4 LINE L1 4717 5136 -1010 2228 131 0 3 chr3 150906082 150906395 -67130763 - AluSx SINE Alu 0 312 1 317 280 85 37 chr3 150906459 150906611 -67130547 - MER5A DNA MER1_type -7 182 3 365 314 215 32 chr3 150906854 150907226 -67129932 - L2 LINE L2 0 3272 2833 367 302 54 8 chr3 150908385 150908514 -67128644 + L1ME4a LINE L1 5981 6115 -6 200 259 0 0 chr3 150908810 150908864 -67128294 + L2 LINE L2 3164 3217 -96 342 313 82 15 chr3 150909402 150909536 -67127622 + MIR SINE MIR 21 163 -99 266 242 65 0 chr3 150909814 150909876 -67127282 + L3b LINE CR1 1324 1389 -194 682 213 8 0 chr3 150909948 150910070 -67127088 + FLAM_A SINE Alu 1 123 -10 508 238 25 16 chr3 150910872 150910994 -67126164 - FLAM_A SINE Alu -10 123 1 1107 178 56 0 chr3 150911068 150911265 -67125893 + AluJb SINE Alu 84 291 -21 2051 113 3 63 chr3 150911265 150911584 -67125574 + AluSq SINE Alu 1 300 -13 1985 129 7 4 chr3 150912465 150912745 -67124413 + AluSq SINE Alu 14 294 -19 190 258 103 41 chr3 150914940 150915037 -67122121 - MIR SINE MIR -111 151 49 587 278 35 18 chr3 150915077 150915246 -67121912 - MIR3 SINE MIR -6 202 31 203 59 0 29 chr3 150915253 150915287 -67121871 + (CACCC)n Simple_repeat Simple_repeat 4 36 0 346 187 176 11 chr3 150917114 150917205 -67119953 - MER69 DNA AcHobo -2 2524 2419 1837 252 54 14 chr3 150917210 150917921 -67119237 + L1MCa LINE L1 2367 3108 -3318 447 204 10 0 chr3 150917922 150918020 -67119138 + L1M4 LINE L1 4472 4570 -1576 499 204 19 0 chr3 150918525 150918633 -67118525 - MER94 DNA DNA 0 134 25 2041 106 46 14 chr3 150918636 150918919 -67118239 + AluSx SINE Alu 5 296 -16 207 116 70 0 chr3 150919035 150919078 -67118080 + T-rich Low_complexity Low_complexity 4 49 0 2473 94 0 0 chr3 150919687 150919996 -67117162 - AluSg SINE Alu -1 309 1 1713 168 16 26 chr3 150920173 150920476 -67116682 - AluJb SINE Alu -12 300 1 249 258 0 0 chr3 150921591 150921653 -67115505 + (TGGA)n Simple_repeat Simple_repeat 3 64 0 242 267 154 86 chr3 150921653 150921945 -67115213 + L3 LINE CR1 1213 1524 -53 25 0 0 0 chr3 150922839 150922864 -67114294 + AT_rich Low_complexity Low_complexity 1 25 0 2075 82 7 11 chr3 150924078 150924359 -67112799 + AluSg SINE Alu 1 280 -30 1890 181 0 0 chr3 150975006 150975304 -67061854 + AluJb SINE Alu 1 298 -14 2124 148 28 6 chr3 150975310 150975668 -67061490 - MER47A DNA MER2_type 0 366 1 1464 187 78 0 chr3 150976720 150977004 -67060154 - AluJo SINE Alu 0 312 7 378 71 71 0 chr3 150977719 150977803 -67059355 + (TA)n Simple_repeat Simple_repeat 1 90 0 306 95 0 0 chr3 150977812 150977854 -67059304 + Alu SINE Alu 245 286 -16 264 137 0 0 chr3 150977864 150977915 -67059243 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 211 27 27 27 chr3 150977983 150978020 -67059138 + (TA)n Simple_repeat Simple_repeat 2 38 0 332 71 0 0 chr3 150978021 150978063 -67059095 - Alu SINE Alu -16 286 245 242 130 29 29 chr3 150978078 150978147 -67059011 + (TA)n Simple_repeat Simple_repeat 1 69 0 287 114 24 54 chr3 150978168 150978335 -67058823 + (TA)n Simple_repeat Simple_repeat 1 162 0 997 134 0 47 chr3 150978339 150978510 -67058648 - AluJo SINE Alu -26 286 124 2095 136 0 10 chr3 150978733 150979034 -67058124 + AluSx SINE Alu 1 298 -14 241 170 0 21 chr3 150979718 150979765 -67057393 + MIR3 SINE MIR 152 197 -11 980 216 97 0 chr3 150980460 150980687 -67056471 + MIR SINE MIR 14 262 0 1726 181 31 0 chr3 150980847 150981140 -67056018 - AluJb SINE Alu -10 302 1 23 68 0 0 chr3 150981188 150981232 -67055926 + AT_rich Low_complexity Low_complexity 1 44 0 2233 98 7 3 chr3 150982133 150982430 -67054728 - AluSg SINE Alu -11 299 2 2207 112 10 3 chr3 150983108 150983404 -67053754 + AluSq SINE Alu 2 299 -14 1861 152 0 23 chr3 150983706 150984015 -67053143 - AluJb SINE Alu -6 306 5 475 305 168 7 chr3 150984174 150984459 -67052699 - HAL1 LINE L1 -789 1718 1388 723 177 63 34 chr3 150985058 150985233 -67051925 + MIR SINE MIR 79 258 -4 2030 144 3 0 chr3 150985234 150985519 -67051639 + AluJo SINE Alu 1 286 -26 2398 88 0 0 chr3 150985531 150985826 -67051332 + AluSx SINE Alu 1 295 -17 23 0 0 0 chr3 150985829 150985852 -67051306 + AT_rich Low_complexity Low_complexity 1 23 0 567 298 69 0 chr3 150986028 150986216 -67050942 - MIR SINE MIR -13 249 49 1210 256 88 41 chr3 150986813 150987394 -67049764 - L1MC4a LINE L1 -1917 5891 5284 2338 108 0 3 chr3 150987524 150987830 -67049328 - AluSg SINE Alu -5 305 1 2328 76 3 0 chr3 150988809 150989132 -67048026 - AluY SINE Alu 0 311 1 318 205 34 14 chr3 150989863 150989978 -67047180 - MER5A DNA MER1_type 0 189 7 590 219 8 8 chr3 150990686 150990809 -67046349 + FLAM_A SINE Alu 1 123 -10 1880 161 3 10 chr3 150991207 150991506 -67045652 + AluJb SINE Alu 3 299 -13 1219 182 40 49 chr3 150991516 150991763 -67045395 + AluJo SINE Alu 36 280 -32 1044 156 97 15 chr3 150992517 150992786 -67044372 - MER33 DNA MER1_type -33 291 1 465 169 0 0 chr3 150992892 150992963 -67044195 + AluS SINE Alu 1 71 -242 1216 158 61 0 chr3 150994299 150994495 -67042663 - MER3 DNA MER1_type -1 208 1 189 0 0 0 chr3 150994498 150994519 -67042639 + (TAGA)n Simple_repeat Simple_repeat 1 21 0 905 141 7 7 chr3 150994877 150995012 -67042146 + AluJo SINE Alu 1 135 -177 200 124 105 44 chr3 150995498 150995560 -67041598 + MIR SINE MIR 91 146 -62 22 99 0 0 chr3 150995779 150995850 -67041308 + AT_rich Low_complexity Low_complexity 1 71 0 612 302 41 50 chr3 150996024 150996080 -67041078 - L1ME LINE L1 -462 5702 5647 607 220 176 6 chr3 150996080 150996239 -67040919 + MER5A DNA MER1_type 4 189 0 612 302 41 50 chr3 150996239 150996623 -67040535 - L1ME LINE L1 -517 5647 5266 500 301 48 11 chr3 150996793 150996979 -67040179 - L2 LINE L2 -1007 2307 2115 242 281 181 0 chr3 150997076 150997247 -67039911 + L1ME3A LINE L1 5174 5375 -771 545 215 84 77 chr3 150997466 150997727 -67039431 + L1ME3A LINE L1 5908 6170 0 371 264 137 39 chr3 150997764 150998030 -67039128 + L1MC4a LINE L1 5593 5824 -297 767 120 19 0 chr3 150998372 150998480 -67038678 + AluSp/q SINE Alu 200 309 -4 420 295 100 35 chr3 150998486 150998747 -67038411 - L2 LINE L2 -1256 2058 1781 216 0 0 0 chr3 150998748 150998772 -67038386 + (A)n Simple_repeat Simple_repeat 1 24 0 2230 111 10 0 chr3 150998782 150999089 -67038069 + AluSq SINE Alu 1 310 -3 1216 8 0 8 chr3 150999615 150999748 -67037410 - AluY SINE Alu -179 132 1 717 284 129 25 chr3 150999751 151000238 -67036920 + L1M4c LINE L1 928 1363 -5200 2508 57 13 0 chr3 151000238 151000539 -67036619 + AluY SINE Alu 1 305 -6 717 284 129 25 chr3 151000539 151000850 -67036308 + L1M4c LINE L1 1363 1984 -4579 314 71 0 0 chr3 151000890 151000932 -67036226 + AluJ/FLAM SINE Alu 39 80 -222 557 189 180 0 chr3 151001009 151001120 -67036038 - FLAM_C SINE Alu -12 131 1 1314 196 15 4 chr3 151001120 151001380 -67035778 - L1 LINE L1 -1118 5028 4766 2196 102 3 3 chr3 151001381 151001675 -67035483 - AluSg SINE Alu -10 300 7 21 36 0 0 chr3 151001895 151001923 -67035235 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 151002193 151002214 -67034944 + AT_rich Low_complexity Low_complexity 1 21 0 512 205 24 63 chr3 151002567 151002694 -67034464 + FRAM SINE Alu 34 155 -21 381 241 118 37 chr3 151002923 151003160 -67033998 + L1M4c LINE L1 2443 2715 -3667 1685 113 0 13 chr3 151003160 151003424 -67033734 + AluSx SINE Alu 59 319 0 381 241 118 37 chr3 151003424 151003508 -67033650 + L1M4c LINE L1 2715 2791 -3591 231 36 0 0 chr3 151003636 151003664 -67033494 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 712 226 0 0 chr3 151003666 151003781 -67033377 - FLAM_C SINE Alu -17 116 2 2218 81 13 52 chr3 151003903 151004210 -67032948 - AluSg SINE Alu -11 299 5 329 208 52 0 chr3 151004753 151004830 -67032328 - MIR SINE MIR -1 261 181 1998 217 71 74 chr3 151006096 151006756 -67030402 + MER76 LTR ERV 1 658 -30 1305 216 58 45 chr3 151006980 151007359 -67029799 + MER67C LTR ERV1 6 389 -321 1101 162 14 28 chr3 151007356 151007572 -67029586 + MER67C LTR ERV1 498 710 0 * 31 82 0 0 chr3 151007647 151007720 -67029438 + AT_rich Low_complexity Low_complexity 1 73 0 283 250 8 133 chr3 151007811 151007931 -67029227 + MIR SINE MIR 9 113 -149 3067 202 34 30 chr3 151008122 151008767 -67028391 + MER82 DNA MER2_type 1 648 -5 561 315 39 12 chr3 151008886 151009140 -67028018 + L2 LINE L2 2364 2624 -690 371 230 71 18 chr3 151009184 151009297 -67027861 + L2 LINE L2 3164 3282 -31 1963 150 0 0 chr3 151009450 151009730 -67027428 - AluJo SINE Alu -32 280 1 21 0 0 0 chr3 151010411 151010432 -67026726 + AT_rich Low_complexity Low_complexity 1 21 0 2198 101 10 10 chr3 151010432 151010740 -67026418 + AluY SINE Alu 1 308 -3 44406 43 1 9 chr3 151010742 151013823 -67023335 + L1PA4 LINE L1 2 3013 -3142 9235 71 18 113 chr3 151013823 151015351 -67021807 + SVA Other Other 3 1386 0 44406 43 1 9 chr3 151015351 151018471 -67018687 + L1PA4 LINE L1 3013 6155 0 28 0 0 0 chr3 151018471 151018499 -67018659 + AT_rich Low_complexity Low_complexity 1 28 0 22 80 0 0 chr3 151019074 151019124 -67018034 + AT_rich Low_complexity Low_complexity 1 50 0 1875 161 13 13 chr3 151019198 151019508 -67017650 - AluSx SINE Alu -2 310 1 346 283 75 0 chr3 151019512 151019618 -67017540 + L2 LINE L2 3195 3308 -5 867 154 60 35 chr3 151019819 151020020 -67017138 + L1MA7 LINE L1 6086 6291 0 522 223 17 51 chr3 151020033 151020208 -67016950 + L1ME2 LINE L1 5863 6031 -135 998 145 39 11 chr3 151020212 151020391 -67016767 - AluJ SINE Alu -9 303 120 410 71 36 0 chr3 151020392 151020448 -67016710 - U6 snRNA snRNA -3 104 47 2348 74 7 3 chr3 151020462 151020761 -67016397 + AluY SINE Alu 1 300 -11 825 160 8 0 chr3 151020776 151020901 -67016257 - AluJ SINE Alu -186 126 1 520 246 23 0 chr3 151020922 151021052 -67016106 + L1MA10 LINE L1 6195 6327 -7 1931 164 3 0 chr3 151021093 151021391 -67015767 - AluJb SINE Alu -13 299 1 1496 160 39 74 chr3 151021625 151021757 -67015401 + AluJb SINE Alu 1 136 -176 1954 136 3 14 chr3 151021757 151022052 -67015106 + AluSx SINE Alu 1 292 -20 1496 160 39 74 chr3 151022052 151022231 -67014927 + AluJb SINE Alu 136 301 -11 353 335 74 0 chr3 151022654 151022830 -67014328 + L2 LINE L2 3124 3312 -1 300 347 101 0 chr3 151022944 151023107 -67014051 + MIR SINE MIR 14 191 -66 472 296 98 40 chr3 151023748 151024022 -67013136 + MER102b DNA MER1_type 51 340 -1 243 287 119 40 chr3 151024032 151024509 -67012649 - L1M4 LINE L1 -1251 4895 4381 196 396 0 0 chr3 151024767 151024863 -67012295 + L2 LINE L2 2716 2811 -503 1623 112 0 73 chr3 151024883 151025143 -67012015 - AluSx SINE Alu -14 298 58 3502 151 17 38 chr3 151025149 151025753 -67011405 - Tigger7 DNA MER2_type -142 591 1 2591 57 0 0 chr3 151026299 151026595 -67010563 + AluY SINE Alu 1 296 -15 263 297 0 0 chr3 151026608 151026672 -67010486 + (TA)n Simple_repeat Simple_repeat 1 64 0 242 170 0 21 chr3 151027077 151027124 -67010034 - MIR3 SINE MIR -11 197 152 2110 126 3 0 chr3 151027807 151028100 -67009058 - AluSx SINE Alu -14 298 5 1203 81 0 32 chr3 151028105 151028290 -67008868 + THE1B-int LTR MaLR 1402 1580 0 254 111 0 122 chr3 151028296 151028386 -67008772 + THE1B LTR MaLR 5 83 -281 546 242 77 43 chr3 151028627 151028779 -67008379 - L1MC4a LINE L1 -315 5806 5786 2338 94 0 3 chr3 151028779 151029087 -67008071 - AluSc SINE Alu -2 307 1 546 242 77 43 chr3 151029087 151029299 -67007859 - L1MC4a LINE L1 -335 5786 5583 344 297 81 9 chr3 151030157 151030268 -67006890 - L2 LINE L2 -5 3308 3190 2260 97 0 0 chr3 151030518 151030807 -67006351 - AluSg SINE Alu -21 289 1 730 215 21 0 chr3 151031959 151032103 -67005055 + MER58A DNA MER1_type 1 147 0 182 242 15 0 chr3 151032476 151032542 -67004616 + CT-rich Low_complexity Low_complexity 5 71 0 46 45 0 0 chr3 151032648 151032715 -67004443 + GC_rich Low_complexity Low_complexity 1 67 0 2025 123 0 3 chr3 151033040 151033325 -67003833 - AluSx SINE Alu -28 284 1 9530 89 24 0 chr3 151033326 151034579 -67002579 - THE1A-int LTR MaLR -297 1283 1 2789 99 6 0 chr3 151034579 151034932 -67002226 - THE1A LTR MaLR 0 355 1 2467 59 3 28 chr3 151035189 151035510 -67001648 + AluSp SINE Alu 1 313 0 1209 220 199 38 chr3 151036042 151036079 -67001079 - L2 LINE L2 -952 2362 2332 2038 152 0 0 chr3 151036079 151036388 -67000770 + AluJb SINE Alu 1 309 -3 1209 220 199 38 chr3 151036388 151036773 -67000385 - L2 LINE L2 -982 2332 1872 1454 139 32 0 chr3 151037099 151037315 -66999843 - MER46A DNA MER2_type -13 223 1 21 36 0 0 chr3 151037405 151037433 -66999725 + AT_rich Low_complexity Low_complexity 1 28 0 2444 80 0 0 chr3 151038270 151038571 -66998587 - AluY SINE Alu -10 301 1 274 212 15 0 chr3 151039190 151039256 -66997902 - MER103 DNA DNA -89 77 11 332 249 45 58 chr3 151039730 151039883 -66997275 + L1M4 LINE L1 1521 1673 -4869 418 286 51 56 chr3 151039923 151040437 -66996721 + L1M4 LINE L1 1986 2563 -4262 21011 98 12 12 chr3 151040469 151043434 -66993724 + L1P LINE L1 11 2976 -3170 3462 51 7 5 chr3 151043410 151043838 -66993320 + L1PA5 LINE L1 5715 6143 -11 * 2092 135 0 3 chr3 151043861 151044158 -66993000 + AluSg SINE Alu 1 296 -14 287 191 93 140 chr3 151044163 151044420 -66992738 + L1M4 LINE L1 2584 2828 -3997 521 190 76 4 chr3 151044529 151044648 -66992510 + MER2 DNA MER2_type 3 137 -102 288 317 0 0 chr3 151044644 151044704 -66992454 + MER2 DNA MER2_type 285 344 -1 * 16796 141 122 32 chr3 151045301 151047493 -66989665 + L1M1 LINE L1 16 2009 -5556 2194 102 20 0 chr3 151047493 151047796 -66989362 + AluSx SINE Alu 4 312 0 16796 141 122 32 chr3 151047796 151047906 -66989252 + L1M1 LINE L1 2009 2108 -5457 1891 145 33 0 chr3 151047906 151048209 -66988949 + AluSq SINE Alu 1 313 0 16796 141 122 32 chr3 151048209 151048677 -66988481 + L1M1 LINE L1 2108 2532 -5033 2337 90 0 7 chr3 151048677 151048976 -66988182 + AluSg SINE Alu 3 299 -11 1933 127 48 0 chr3 151048981 151049272 -66987886 + AluSg SINE Alu 1 305 -5 16796 141 122 32 chr3 151049272 151052196 -66984962 + L1M1 LINE L1 2535 6231 -1334 243 293 37 12 chr3 151052344 151052426 -66984732 + GA-rich Low_complexity Low_complexity 4 87 0 1065 187 15 38 chr3 151052466 151052733 -66984425 - AluY SINE Alu -50 261 1 245 274 88 39 chr3 151053234 151053336 -66983822 + L2 LINE L2 1951 2057 -1257 229 340 64 7 chr3 151054036 151054177 -66982981 + L2 LINE L2 3122 3270 -43 514 313 129 29 chr3 151054893 151055573 -66981585 + L1MC4a LINE L1 6009 6756 -1052 4884 183 40 3 chr3 151056463 151057369 -66979789 + L1MA4 LINE L1 14 952 -4376 583 242 45 15 chr3 151057390 151057588 -66979570 - L1 LINE L1 -2610 3536 3333 1739 131 50 47 chr3 151057663 151057961 -66979197 - AluSx SINE Alu -13 299 1 3345 193 51 68 chr3 151058050 151058523 -66978635 + L1MA4 LINE L1 971 1451 -4877 6252 79 38 15 chr3 151058523 151058860 -66978298 + L1PA14 LINE L1 5048 5376 -785 2004 112 49 0 chr3 151058860 151059146 -66978012 + AluSx SINE Alu 1 300 -12 6252 79 38 15 chr3 151059146 151059877 -66977281 + L1PA14 LINE L1 5376 6144 -17 3345 193 51 68 chr3 151059877 151060387 -66976771 + L1MA4 LINE L1 1451 1937 -4391 1190 195 0 5 chr3 151060387 151060587 -66976571 + AluJ SINE Alu 1 199 -113 4970 182 59 135 chr3 151060589 151062300 -66974858 - MER52A LTR ERV1 -8 1747 197 279 298 36 0 chr3 151062273 151062357 -66974801 - MER52A LTR ERV1 -1666 89 3 * 813 148 0 0 chr3 151062357 151062479 -66974679 + AluJ SINE Alu 188 309 -3 471 219 81 31 chr3 151062491 151062651 -66974507 + L1MA4 LINE L1 1934 2101 -4227 663 221 16 8 chr3 151062659 151062781 -66974377 + AluSq/x SINE Alu 3 125 -187 419 152 51 36 chr3 151062812 151062950 -66974208 + L1MA4 LINE L1 2107 2246 -4082 4919 148 24 20 chr3 151062951 151063155 -66974003 + L1MA4 LINE L1 5611 5813 -669 369 109 0 0 chr3 151063155 151063210 -66973948 + (TATG)n Simple_repeat Simple_repeat 3 57 0 4919 148 24 20 chr3 151063210 151063827 -66973331 + L1MA4 LINE L1 5813 6439 -43 5121 161 38 59 chr3 151063827 151064917 -66972241 + MER11C LTR ERVK 1 1067 -4 4919 148 24 20 chr3 151064917 151064957 -66972201 + L1MA4 LINE L1 6439 6477 -5 2234 121 0 6 chr3 151065115 151065429 -66971729 + AluSx SINE Alu 1 312 0 303 19 38 38 chr3 151065654 151065707 -66971451 + (AAATG)n Simple_repeat Simple_repeat 3 55 0 4746 153 15 12 chr3 151065904 151066635 -66970523 - MER44D DNA MER2_type 0 605 1 1513 179 14 7 chr3 151066658 151066938 -66970220 + L1 LINE L1 3624 3905 -2241 14395 165 79 19 chr3 151067330 151069008 -66968150 + L1PBa LINE L1 1 1577 -5285 2304 106 3 0 chr3 151069008 151069311 -66967847 - AluSp SINE Alu -9 304 1 14395 165 79 19 chr3 151069311 151070112 -66967046 + L1PBa LINE L1 1577 2328 -4534 2313 116 0 0 chr3 151070112 151070422 -66966736 + AluSq SINE Alu 1 310 -3 14395 165 79 19 chr3 151070422 151071846 -66965312 + L1PBa LINE L1 2328 3665 -3197 2388 86 0 3 chr3 151071846 151072149 -66965009 + AluY SINE Alu 1 302 -9 14395 165 79 19 chr3 151072149 151072563 -66964595 + L1PBa LINE L1 3665 4053 -2809 2205 116 0 13 chr3 151072563 151072864 -66964294 + AluSx SINE Alu 1 297 -15 14395 165 79 19 chr3 151072864 151073338 -66963820 + L1PBa LINE L1 4053 5077 -1785 273 306 24 8 chr3 151073947 151074071 -66963087 + L2 LINE L2 2854 2979 -293 1307 165 34 81 chr3 151074141 151074462 -66962696 + AluJb SINE Alu 2 307 -5 431 89 0 0 chr3 151074463 151074519 -66962639 + Alu SINE Alu 1 56 -253 1472 112 5 0 chr3 151074519 151074724 -66962434 + AluSg/x SINE Alu 96 301 -9 2092 134 10 0 chr3 151074725 151075032 -66962126 + AluSx SINE Alu 1 310 -2 357 275 74 26 chr3 151075046 151075235 -66961923 + L2 LINE L2 3116 3313 0 1044 233 6 7 chr3 151075443 151075746 -66961412 + MLT1A1 LTR MaLR 1 396 -32 1848 154 22 22 chr3 151075749 151076061 -66961097 - AluJo SINE Alu 0 312 1 296 118 13 40 chr3 151076062 151076138 -66961020 + (TTC)n Simple_repeat Simple_repeat 2 75 0 2245 121 0 0 chr3 151076144 151076450 -66960708 - AluSx SINE Alu -6 306 1 1099 173 0 0 chr3 151076827 151077000 -66960158 - FRAM SINE Alu -4 172 1 2641 105 14 3 chr3 151077740 151078091 -66959067 - THE1A LTR MaLR 0 355 1 1323 63 23 0 chr3 151078091 151078266 -66958892 - THE1A-int LTR MaLR 0 1580 1402 2025 139 3 3 chr3 151078267 151078568 -66958590 + AluSx SINE Alu 1 301 -11 697 211 0 0 chr3 151078689 151078798 -66958360 + FLAM_C SINE Alu 1 109 -34 30 27 0 0 chr3 151078805 151078842 -66958316 + AT_rich Low_complexity Low_complexity 1 37 0 381 241 118 37 chr3 151078956 151079040 -66958118 - L1MEc LINE L1 -3591 2624 2548 1684 113 0 13 chr3 151079040 151079304 -66957854 - AluSx SINE Alu 0 319 59 381 241 118 37 chr3 151079304 151079541 -66957617 - L1MEc LINE L1 -3667 2548 2276 324 279 93 7 chr3 151079568 151079708 -66957450 - L1MEc LINE L1 -4104 2292 2141 3582 211 29 13 chr3 151079944 151080815 -66956343 + L1MA2 LINE L1 4403 5287 -859 1250 88 41 6 chr3 151080815 151080985 -66956173 - AluSg/x SINE Alu -19 291 116 4308 124 16 3 chr3 151080985 151081623 -66955535 + L1MA2 LINE L1 5659 6304 0 3626 206 59 50 chr3 151082078 151082146 -66955012 + L1ME1 LINE L1 4636 4702 -1464 1639 168 29 7 chr3 151082146 151082426 -66954732 + AluJo SINE Alu 1 286 -26 3626 206 59 50 chr3 151082426 151083861 -66953297 + L1ME1 LINE L1 4702 6161 -5 547 278 134 54 chr3 151083876 151084018 -66953140 + HAL1b LINE L1 221 350 -998 1766 176 7 16 chr3 151084018 151084325 -66952833 + AluJb SINE Alu 1 304 -8 547 278 134 54 chr3 151084325 151084733 -66952425 + HAL1b LINE L1 350 815 -533 519 255 128 52 chr3 151084824 151085229 -66951929 + L1MC5 LINE L1 6413 6774 -1034 1414 134 0 48 chr3 151085248 151085479 -66951679 + AluSg/x SINE Alu 84 303 -7 1886 119 96 44 chr3 151085734 151086077 -66951081 + MER46B DNA MER2_type 1 236 0 706 224 99 5 chr3 151086079 151086271 -66950887 + MIR SINE MIR 28 237 -25 342 300 107 0 chr3 151086305 151086445 -66950713 + MIR SINE MIR 81 235 -27 222 219 0 0 chr3 151086769 151086810 -66950348 + CT-rich Low_complexity Low_complexity 3 43 0 21 0 0 0 chr3 151087372 151087393 -66949765 + AT_rich Low_complexity Low_complexity 1 21 0 2327 73 0 0 chr3 151087881 151088168 -66948990 - AluSx SINE Alu -25 287 1 437 303 96 1 chr3 151088496 151088686 -66948472 - MIR SINE MIR -32 230 30 438 279 56 22 chr3 151089961 151090140 -66947018 - MLT1L LTR MaLR 0 615 431 330 250 22 125 chr3 151090792 151090817 -66946341 - L2 LINE L2 0 3313 3287 2409 78 3 0 chr3 151090817 151091112 -66946046 + AluSp SINE Alu 1 296 -17 330 250 22 125 chr3 151091112 151091363 -66945795 - L2 LINE L2 -26 3287 3014 2071 74 37 37 chr3 151091469 151091767 -66945391 - AluY SINE Alu -13 298 1 252 300 100 25 chr3 151091939 151092059 -66945099 + L2 LINE L2 3171 3299 -14 4343 42 17 0 chr3 151092062 151092544 -66944614 - LTR2B LTR ERV1 0 490 1 908 245 35 42 chr3 151092679 151092940 -66944218 - MIR SINE MIR 0 262 4 2341 202 73 31 chr3 151093038 151093558 -66943600 - MLT1F LTR MaLR 0 542 1 470 258 53 33 chr3 151093558 151093709 -66943449 + L2 LINE L2 3158 3311 -2 733 200 8 8 chr3 151093809 151093934 -66943224 - FLAM_C SINE Alu -8 125 1 2190 111 3 17 chr3 151094301 151094437 -66942721 + AluSx SINE Alu 1 137 -175 2493 60 7 0 chr3 151094437 151094739 -66942419 + AluY SINE Alu 1 304 -7 2190 111 3 17 chr3 151094739 151094899 -66942259 + AluSx SINE Alu 137 293 -19 625 197 90 0 chr3 151095421 151095543 -66941615 + FLAM_A SINE Alu 10 142 0 415 194 30 15 chr3 151095549 151095683 -66941475 + GA-rich Low_complexity Low_complexity 5 140 0 200 188 0 0 chr3 151095685 151095717 -66941441 + polypurine Low_complexity Low_complexity 1 32 0 2482 66 3 3 chr3 151095806 151096109 -66941049 - AluSp SINE Alu -10 303 1 6673 59 21 11 chr3 151096265 151097927 -66939231 + L1PA7 LINE L1 4463 6154 0 1411 181 25 0 chr3 151097928 151098209 -66938949 + L1ME1 LINE L1 5596 5883 -283 1621 185 130 37 chr3 151098498 151099019 -66938139 + MER34B LTR ERV1 11 565 0 2093 133 0 0 chr3 151099797 151100091 -66937067 + AluSg SINE Alu 1 294 -16 5392 122 21 27 chr3 151100093 151101076 -66936082 + L1PB1 LINE L1 4987 5975 -176 2380 101 0 3 chr3 151101076 151101383 -66935775 + AluSc SINE Alu 1 306 -3 8072 74 7 6 chr3 151101384 151102454 -66934704 - MER11C LTR ERVK 0 1071 1 5392 122 21 27 chr3 151102454 151102638 -66934520 + L1PB1 LINE L1 5974 6150 -1 2189 135 0 0 chr3 151102911 151103215 -66933943 + AluSx SINE Alu 1 304 -8 629 279 67 21 chr3 151103691 151103749 -66933409 + L1ME LINE L1 691 745 -5516 793 83 0 0 chr3 151103749 151103858 -66933300 - L1MB5 LINE L1 -6 6168 6060 629 279 67 21 chr3 151103858 151104279 -66932879 + L1ME LINE L1 745 1324 -4937 1862 157 27 0 chr3 151104279 151104579 -66932579 + AluSx SINE Alu 1 308 -4 629 279 67 21 chr3 151104579 151104766 -66932392 + L1ME LINE L1 1324 1501 -4760 558 198 63 0 chr3 151104756 151104882 -66932276 + L1ME1 LINE L1 5467 5600 -566 * 30142 101 15 63 chr3 151104895 151106572 -66930586 + L1PA7 LINE L1 10 1766 -4388 2256 100 7 0 chr3 151106572 151106873 -66930285 + AluY SINE Alu 1 303 -8 30142 101 15 63 chr3 151106873 151111658 -66925500 + L1PA7 LINE L1 1766 6154 0 1417 185 24 0 chr3 151111653 151111940 -66925218 + L1ME1 LINE L1 5590 5883 -283 * 1621 185 130 37 chr3 151112229 151112750 -66924408 + MER34B LTR ERV1 11 565 0 2219 94 3 28 chr3 151113528 151113846 -66923312 + AluSg SINE Alu 1 310 0 1219 220 199 38 chr3 151114378 151114415 -66922743 - L2 LINE L2 -952 2362 2332 2045 152 0 0 chr3 151114415 151114724 -66922434 + AluJb SINE Alu 1 309 -3 1219 220 199 38 chr3 151114724 151115109 -66922049 - L2 LINE L2 -982 2332 1872 273 287 30 43 chr3 151115648 151115812 -66921346 + L2 LINE L2 2732 2893 -421 2317 87 0 29 chr3 151115825 151116134 -66921024 - AluSc SINE Alu -9 300 1 4450 200 67 17 chr3 151116587 151116854 -66920304 - L1 LINE L1 -2568 4640 4388 2221 117 3 0 chr3 151116854 151117145 -66920013 - AluSp SINE Alu -21 292 1 4450 200 67 17 chr3 151117145 151118732 -66918426 - L1 LINE L1 -2820 4388 2654 9096 36 11 2 chr3 151118732 151120624 -66916534 - L1PA5 LINE L1 -3 6151 4251 4450 200 67 17 chr3 151120624 151120962 -66916196 - L1 LINE L1 -4554 2654 2334 3193 223 118 34 chr3 151120988 151122228 -66914930 - L1 LINE L1 -5428 1781 3 397 204 112 91 chr3 151122277 151122388 -66914770 + L1M4 LINE L1 3687 3794 -2352 1757 171 44 0 chr3 151122388 151122510 -66914648 + AluSx SINE Alu 1 116 -196 269 82 20 0 chr3 151122510 151122559 -66914599 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 1757 171 44 0 chr3 151122559 151122729 -66914429 + AluSx SINE Alu 116 306 -6 397 204 112 91 chr3 151122729 151122936 -66914222 + L1M4 LINE L1 3794 4011 -2135 358 64 0 0 chr3 151122933 151122980 -66914178 - L1PA14 LINE L1 -98 6063 6017 * 714 71 44 9 chr3 151122980 151123091 -66914067 + L1PA14 LINE L1 6044 6160 -1 1181 165 33 0 chr3 151123099 151123311 -66913847 + Tigger2 DNA MER2_type 315 533 -2185 1734 173 38 0 chr3 151123383 151123502 -66913656 + AluJb SINE Alu 1 114 -198 207 0 0 0 chr3 151123502 151123525 -66913633 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1734 173 38 0 chr3 151123525 151123694 -66913464 + AluJb SINE Alu 114 300 -12 2109 123 11 7 chr3 151123805 151124109 -66913049 + AluSx SINE Alu 1 305 0 446 144 17 220 chr3 151124115 151124185 -66912973 - MER5A DNA MER1_type -51 138 56 2051 118 14 0 chr3 151124185 151124481 -66912677 - AluSx SINE Alu -8 304 5 446 144 17 220 chr3 151124481 151124501 -66912657 - MER5A DNA MER1_type -133 56 34 1548 105 43 4 chr3 151124501 151124759 -66912399 + L1MA2 LINE L1 6037 6304 0 446 144 17 220 chr3 151124759 151124840 -66912318 - MER5A DNA MER1_type -155 34 1 370 300 41 12 chr3 151124867 151125110 -66912048 + L1M4 LINE L1 4404 4653 -1493 324 239 37 73 chr3 151125115 151125224 -66911934 + MIR SINE MIR 9 113 -149 24 67 0 0 chr3 151126593 151126638 -66910520 + AT_rich Low_complexity Low_complexity 1 45 0 2126 111 14 0 chr3 151128642 151128930 -66908228 - AluSx SINE Alu -20 292 1 213 268 18 0 chr3 151128933 151128989 -66908169 - MIR3 SINE MIR -44 164 108 233 331 105 8 chr3 151129069 151129193 -66907965 - MIR SINE MIR -74 188 53 21 36 0 0 chr3 151129329 151129357 -66907801 + AT_rich Low_complexity Low_complexity 1 28 0 563 219 231 48 chr3 151129983 151130030 -66907128 - HAL1 LINE L1 -33 2474 2437 1718 188 0 3 chr3 151130030 151130337 -66906821 + AluJo SINE Alu 1 312 0 563 219 231 48 chr3 151130337 151130847 -66906311 - HAL1 LINE L1 -70 2437 1815 839 195 100 5 chr3 151130908 151131108 -66906050 - MER20 DNA MER1_type 0 219 1 329 254 9 18 chr3 151131108 151131222 -66905936 - HAL1 LINE L1 -775 1732 1620 1141 101 0 18 chr3 151131228 151131396 -66905762 + AluSg/x SINE Alu 132 296 -14 765 288 37 12 chr3 151131399 151131726 -66905432 - HAL1 LINE L1 -910 1597 1263 995 66 0 0 chr3 151131727 151131849 -66905309 - AluY SINE Alu -2 309 188 424 270 32 24 chr3 151132016 151132142 -66905016 + MIR SINE MIR 109 235 -27 305 257 103 51 chr3 151132221 151132396 -66904762 - HAL1 LINE L1 -1478 1029 846 1331 166 90 0 chr3 151132396 151132685 -66904473 + L1MA8 LINE L1 5956 6270 -21 744 303 149 44 chr3 151132689 151133421 -66903737 - HAL1 LINE L1 -1640 867 59 6512 28 5 0 chr3 151133976 151134777 -66902381 - L1PA3 LINE L1 0 6155 5351 2753 20 0 0 chr3 151134775 151135122 -66902036 + L1PA3 LINE L1 4996 5342 -804 * 2343 89 0 0 chr3 151135251 151135543 -66901615 - AluSq SINE Alu -21 292 1 1388 160 13 17 chr3 151137486 151137723 -66899435 - AluJb SINE Alu -68 244 9 187 320 0 0 chr3 151137793 151137843 -66899315 + L2 LINE L2 3179 3228 -85 381 297 59 25 chr3 151137978 151138040 -66899118 - L1ME LINE L1 -732 5432 5374 1460 184 20 38 chr3 151138040 151138333 -66898825 - AluJo SINE Alu -22 290 3 381 297 59 25 chr3 151138333 151138495 -66898663 - L1ME LINE L1 -790 5374 5209 249 221 66 148 chr3 151138579 151138701 -66898457 - L2 LINE L2 0 3272 3161 2131 113 7 29 chr3 151138781 151139091 -66898067 + AluSq SINE Alu 1 303 -10 749 295 55 12 chr3 151139699 151139974 -66897184 - L1PB4 LINE L1 -9 6147 5862 1845 172 14 3 chr3 151140131 151140428 -66896730 + AluJb SINE Alu 1 300 -12 700 200 138 0 chr3 151141469 151141629 -66895529 - MER58A DNA MER1_type -1 223 42 188 265 69 49 chr3 151141723 151141825 -66895333 - L3 LINE CR1 -140 1437 1334 28 29 0 0 chr3 151141937 151141972 -66895186 + AT_rich Low_complexity Low_complexity 1 35 0 296 315 122 21 chr3 151142064 151142270 -66894888 + MIR SINE MIR 1 230 -32 406 344 116 55 chr3 151142579 151142655 -66894503 + L1MEd LINE L1 245 315 -5804 3721 78 10 6 chr3 151142655 151143166 -66893992 - LTR10D LTR ERV1 0 513 1 406 344 116 55 chr3 151143166 151143600 -66893558 + L1MEd LINE L1 315 786 -5333 2305 85 3 16 chr3 151143628 151143934 -66893224 + AluSx SINE Alu 1 302 -10 329 273 82 11 chr3 151144136 151144319 -66892839 + L1MEd LINE L1 1048 1243 -4876 360 273 141 53 chr3 151144334 151144561 -66892597 + HAL1 LINE L1 1363 1609 -898 5494 227 57 21 chr3 151144561 151144686 -66892472 + L1MB8 LINE L1 31 150 -6496 297 75 0 0 chr3 151144686 151144726 -66892432 + (CA)n Simple_repeat Simple_repeat 2 41 0 5494 227 57 21 chr3 151144726 151145777 -66891381 + L1MB8 LINE L1 150 1308 -5338 1912 127 3 11 chr3 151145777 151146083 -66891075 + AluSx SINE Alu 1 304 0 5494 227 57 21 chr3 151146083 151146754 -66890404 + L1MB8 LINE L1 1308 1954 -4692 4072 184 38 44 chr3 151146747 151148029 -66889129 + L1MB8 LINE L1 5191 6676 0 * 254 133 0 147 chr3 151148028 151148062 -66889096 + HAL1 LINE L1 1583 1602 -905 * 2135 106 7 7 chr3 151148062 151148363 -66888795 - AluSq SINE Alu -12 301 1 254 133 0 147 chr3 151148363 151148403 -66888755 + HAL1 LINE L1 1602 1646 -861 2274 88 7 3 chr3 151148620 151148914 -66888244 + AluSp SINE Alu 1 295 -18 1103 181 15 73 chr3 151148996 151149255 -66887903 + AluJo SINE Alu 1 244 -68 510 196 31 0 chr3 151149281 151149378 -66887780 + FRAM SINE Alu 56 155 -21 381 241 118 37 chr3 151149607 151149844 -66887314 + L1M4 LINE L1 2705 2977 -3667 1685 113 0 13 chr3 151149844 151150108 -66887050 + AluSx SINE Alu 59 319 0 381 241 118 37 chr3 151150108 151150192 -66886966 + L1M4 LINE L1 2977 3053 -3591 231 36 0 0 chr3 151150320 151150348 -66886810 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 712 226 0 0 chr3 151150350 151150465 -66886693 - FLAM_C SINE Alu -17 116 2 1782 141 67 3 chr3 151150587 151150754 -66886404 - AluJb SINE Alu -11 301 107 297 0 0 0 chr3 151150754 151150787 -66886371 + (TTA)n Simple_repeat Simple_repeat 2 34 0 1782 141 67 3 chr3 151150787 151150902 -66886256 - AluJb SINE Alu -205 107 1 357 272 218 27 chr3 151150916 151151089 -66886069 + L1M4 LINE L1 3581 3720 -2924 2073 115 7 3 chr3 151151089 151151393 -66885765 + AluSx SINE Alu 5 309 -3 357 272 218 27 chr3 151151393 151151480 -66885678 + L1M4 LINE L1 3720 3891 -2753 231 253 165 13 chr3 151151487 151151566 -66885592 - L1ME LINE L1 -423 5698 5608 25 31 0 0 chr3 151151585 151151617 -66885541 + AT_rich Low_complexity Low_complexity 1 32 0 2094 112 7 10 chr3 151151693 151151998 -66885160 - AluSq SINE Alu -9 304 1 2043 137 3 0 chr3 151152052 151152351 -66884807 - AluSx SINE Alu -7 305 6 212 319 71 53 chr3 151153754 151153923 -66883235 - MIR SINE MIR -19 243 72 2019 145 7 3 chr3 151154083 151154387 -66882771 + AluJb SINE Alu 3 307 -5 24 67 0 0 chr3 151155374 151155419 -66881739 + AT_rich Low_complexity Low_complexity 1 45 0 1892 128 0 21 chr3 151156150 151156438 -66880720 + AluSx SINE Alu 30 311 -1 1997 144 0 7 chr3 151156873 151157171 -66879987 + AluSx SINE Alu 1 296 -16 2236 131 0 0 chr3 151157175 151157480 -66879678 + AluSx SINE Alu 1 305 -7 522 330 24 58 chr3 151158381 151158489 -66878669 - L2 LINE L2 -500 2814 2704 1626 167 53 18 chr3 151158489 151158771 -66878387 - AluJo SINE Alu -20 292 1 522 330 24 58 chr3 151158771 151158956 -66878202 - L2 LINE L2 -610 2704 2531 2440 76 0 3 chr3 151159236 151159539 -66877619 + AluSg SINE Alu 1 302 -8 604 115 46 0 chr3 151160138 151160225 -66876933 - AluSx SINE Alu -24 285 195 360 224 0 0 chr3 151160243 151160310 -66876848 + MLT1J LTR MaLR 125 191 -320 186 43 0 0 chr3 151160344 151160367 -66876791 + (TCCCC)n Simple_repeat Simple_repeat 1 23 0 1415 98 26 0 chr3 151160412 151160606 -66876552 - AluSx SINE Alu -113 199 1 318 135 14 27 chr3 151161241 151161315 -66875843 + A-rich Low_complexity Low_complexity 3 75 0 1202 15 0 8 chr3 151162131 151162264 -66874894 - AluY SINE Alu -179 132 1 735 284 129 23 chr3 151162267 151162753 -66874405 + L1M4c LINE L1 929 1362 -5201 2379 65 13 26 chr3 151162753 151163063 -66874095 + AluY SINE Alu 1 306 -5 735 284 129 23 chr3 151163063 151163373 -66873785 + L1M4c LINE L1 1362 1984 -4579 314 71 0 0 chr3 151163413 151163455 -66873703 + AluJ/FLAM SINE Alu 39 80 -222 557 189 180 0 chr3 151163532 151163643 -66873515 - FLAM_C SINE Alu -12 131 1 6827 160 18 78 chr3 151163643 151163904 -66873254 - L1 LINE L1 -1118 5028 4753 2220 100 7 0 chr3 151163904 151164203 -66872955 - AluY SINE Alu -10 301 1 6827 160 18 78 chr3 151164203 151164265 -66872893 - L1 LINE L1 -1393 4753 4689 1710 190 3 7 chr3 151164265 151164565 -66872593 - AluJo SINE Alu -13 299 1 6827 160 18 78 chr3 151164565 151165467 -66871691 - L1 LINE L1 -1457 4689 3914 1798 136 64 72 chr3 151165467 151165843 -66871315 + THE1C LTR MaLR 1 373 -2 6827 160 18 78 chr3 151165843 151166193 -66870965 - L1 LINE L1 -2232 3914 3545 2027 129 0 4 chr3 151166382 151166707 -66870451 + AluSc SINE Alu 1 324 0 2424 90 0 0 chr3 151166832 151167131 -66870027 - AluSg SINE Alu -11 299 1 23 33 0 0 chr3 151167201 151167231 -66869927 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr3 151167651 151167678 -66869480 + GC_rich Low_complexity Low_complexity 1 27 0 2051 139 3 7 chr3 151167994 151168296 -66868862 - AluJb SINE Alu -11 301 1 2224 184 45 28 chr3 151168327 151168669 -66868489 + L1M4 LINE L1 4816 5151 -1029 1917 150 3 7 chr3 151168669 151168969 -66868189 + AluJo SINE Alu 1 299 -13 2224 184 45 28 chr3 151168969 151169134 -66868024 + L1M4 LINE L1 5151 5331 -849 2147 117 0 10 chr3 151169134 151169442 -66867716 + AluSx SINE Alu 1 305 -7 2224 184 45 28 chr3 151169442 151169482 -66867676 + L1M4 LINE L1 5331 5369 -811 2092 115 7 10 chr3 151169496 151169801 -66867357 + AluSq SINE Alu 1 304 -9 23 62 0 0 chr3 151169877 151169909 -66867249 + AT_rich Low_complexity Low_complexity 1 32 0 4143 142 20 129 chr3 151170102 151171252 -66865906 - L1 LINE L1 -1568 4578 3554 22 0 0 0 chr3 151171793 151171815 -66865343 + AT_rich Low_complexity Low_complexity 1 22 0 398 293 26 47 chr3 151172294 151172485 -66864673 - L1ME3A LINE L1 -21 6149 5963 2308 107 0 0 chr3 151174100 151174409 -66862749 + AluSq SINE Alu 1 309 -4 1690 151 14 34 chr3 151174592 151174914 -66862244 + AluJb SINE Alu 1 316 0 1290 178 37 0 chr3 151174917 151175131 -66862027 + AluSg/x SINE Alu 85 306 -6 1038 229 184 28 chr3 151175404 151175872 -66861286 + MLT1G LTR MaLR 50 590 0 2458 80 0 3 chr3 151177268 151177569 -66859589 - AluY SINE Alu -11 300 1 1965 152 0 10 chr3 151177569 151177879 -66859279 - AluJb SINE Alu -5 307 1 901 120 15 15 chr3 151177883 151178016 -66859142 - FLAM_C SINE Alu 0 133 1 2045 126 3 7 chr3 151178148 151178433 -66858725 - AluSx SINE Alu -15 297 14 2372 104 0 0 chr3 151178448 151178756 -66858402 - AluSc SINE Alu -1 308 1 1466 162 29 70 chr3 151178849 151179163 -66857995 - AluJo SINE Alu 0 312 12 1657 193 0 7 chr3 151179210 151179511 -66857647 + AluJo SINE Alu 14 312 0 1353 213 0 37 chr3 151179521 151179646 -66857512 + AluJo SINE Alu 1 129 -183 2242 81 3 10 chr3 151179646 151179944 -66857214 - AluSx SINE Alu -16 296 1 1353 213 0 37 chr3 151179944 151180118 -66857040 + AluJo SINE Alu 129 289 -23 22 35 0 0 chr3 151180254 151180283 -66856875 + AT_rich Low_complexity Low_complexity 1 29 0 644 245 151 49 chr3 151180725 151181095 -66856063 + MLT1J2 LTR MaLR 44 508 -3 1777 159 17 26 chr3 151181466 151181768 -66855390 - AluJo SINE Alu -9 303 5 443 223 37 25 chr3 151182007 151182195 -66854963 + L1ME3A LINE L1 5270 5454 -702 1988 133 35 0 chr3 151182299 151182585 -66854573 + AluSx SINE Alu 1 296 -16 9492 75 13 54 chr3 151182587 151184031 -66853127 + SVA Other Other 1 1385 -1 276 244 96 37 chr3 151184118 151184253 -66852905 + L1ME3A LINE L1 5781 5923 -247 221 0 0 33 chr3 151184282 151184312 -66852846 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 2079 102 39 7 chr3 151184552 151184835 -66852323 - AluSx SINE Alu -20 292 1 26 64 0 0 chr3 151184837 151184884 -66852274 + AT_rich Low_complexity Low_complexity 1 47 0 1237 102 6 0 chr3 151185407 151185574 -66851584 + AluSg/x SINE Alu 133 300 -10 2022 142 0 0 chr3 151186112 151186401 -66850757 - AluSx SINE Alu -13 299 11 48 85 0 0 chr3 151186534 151186628 -66850530 + GC_rich Low_complexity Low_complexity 1 94 0 24 32 0 0 chr3 151186656 151186687 -66850471 + GC_rich Low_complexity Low_complexity 1 31 0 204 97 0 0 chr3 151186689 151186720 -66850438 + (CGGGG)n Simple_repeat Simple_repeat 4 34 0 30 0 0 0 chr3 151186735 151186765 -66850393 + GC_rich Low_complexity Low_complexity 1 30 0 25 65 0 0 chr3 151186798 151186844 -66850314 + GC_rich Low_complexity Low_complexity 1 46 0 1061 64 6 18 chr3 151186927 151187098 -66850060 + (TC)n Simple_repeat Simple_repeat 1 169 0 239 281 83 88 chr3 151187207 151187435 -66849723 - L1ME LINE L1 -379 5742 5516 23 33 0 0 chr3 151187893 151187923 -66849235 + AT_rich Low_complexity Low_complexity 1 30 0 2033 122 3 7 chr3 151188044 151188340 -66848818 - AluSx SINE Alu -17 295 1 188 237 51 68 chr3 151188497 151188556 -66848602 + L2 LINE L2 3251 3308 -5 424 127 63 0 chr3 151188742 151188821 -66848337 - L1MB8 LINE L1 0 6178 6095 4027 172 28 61 chr3 151188827 151189001 -66848157 - L1MB4 LINE L1 -1 6179 6001 2463 165 28 28 chr3 151189001 151189432 -66847726 + MSTB1 LTR MaLR 1 431 -1 4027 172 28 61 chr3 151189432 151189553 -66847605 - L1MB4 LINE L1 -179 6001 5878 2641 33 0 3 chr3 151189553 151189855 -66847303 - AluY SINE Alu -10 301 1 4027 172 28 61 chr3 151189855 151189978 -66847180 - L1MB4 LINE L1 -302 5878 5752 265 114 0 0 chr3 151189978 151190013 -66847145 + U2 snRNA snRNA 1 35 -153 4027 172 28 61 chr3 151190013 151190460 -66846698 - L1MB4 LINE L1 -428 5752 5292 2310 96 0 16 chr3 151190460 151190773 -66846385 - AluSq SINE Alu -5 308 1 4027 172 28 61 chr3 151190773 151190938 -66846220 - L1MB4 LINE L1 -888 5292 5123 1901 153 3 7 chr3 151190938 151191238 -66845920 - AluJo SINE Alu -13 299 1 4027 172 28 61 chr3 151191238 151191580 -66845578 - L1MB4 LINE L1 -1057 5123 4816 2035 142 3 7 chr3 151191611 151191913 -66845245 + AluJb SINE Alu 1 301 -11 1879 178 0 0 chr3 151192114 151192412 -66844746 + AluJb SINE Alu 1 298 -14 2339 148 28 3 chr3 151192418 151192775 -66844383 - MER47A DNA MER2_type 0 366 1 1446 187 78 0 chr3 151193824 151194108 -66843050 - AluJo SINE Alu 0 312 7 345 83 71 0 chr3 151194824 151194908 -66842250 + (TA)n Simple_repeat Simple_repeat 1 90 0 326 95 0 0 chr3 151194917 151194959 -66842199 + Alu SINE Alu 245 286 -16 264 137 0 0 chr3 151194969 151195020 -66842138 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 211 27 27 27 chr3 151195088 151195125 -66842033 + (TA)n Simple_repeat Simple_repeat 1 37 0 352 71 0 0 chr3 151195126 151195168 -66841990 - Alu SINE Alu -16 286 245 242 130 29 29 chr3 151195183 151195252 -66841906 + (TA)n Simple_repeat Simple_repeat 1 69 0 287 114 24 54 chr3 151195273 151195440 -66841718 + (TA)n Simple_repeat Simple_repeat 1 162 0 1015 135 0 41 chr3 151195444 151195614 -66841544 - AluJo SINE Alu -26 286 124 1930 143 0 17 chr3 151195837 151196138 -66841020 + AluSx SINE Alu 1 296 -16 2236 131 0 0 chr3 151196142 151196447 -66840711 + AluSx SINE Alu 1 305 -7 522 330 24 58 chr3 151197348 151197456 -66839702 - L2 LINE L2 -500 2814 2704 1626 167 53 18 chr3 151197456 151197738 -66839420 - AluJo SINE Alu -20 292 1 522 330 24 58 chr3 151197738 151197923 -66839235 - L2 LINE L2 -610 2704 2531 2440 76 0 3 chr3 151198203 151198506 -66838652 + AluSg SINE Alu 1 302 -8 560 115 46 0 chr3 151199105 151199192 -66837966 - AluSx SINE Alu -24 285 195 355 224 0 0 chr3 151199210 151199277 -66837881 + MLT1J LTR MaLR 125 191 -320 186 43 0 0 chr3 151199311 151199334 -66837824 + (TCCCC)n Simple_repeat Simple_repeat 1 23 0 1413 98 26 0 chr3 151199379 151199573 -66837585 - AluSx SINE Alu -113 199 1 339 122 14 27 chr3 151200208 151200282 -66836876 + (GAAAA)n Simple_repeat Simple_repeat 3 75 0 183 184 0 0 chr3 151200708 151200746 -66836412 + GA-rich Low_complexity Low_complexity 3 40 0 1791 188 33 14 chr3 151201379 151201747 -66835411 + THE1C LTR MaLR 1 375 0 408 253 65 9 chr3 151202878 151203064 -66834094 + L1ME3A LINE L1 5681 5875 -295 1784 150 7 7 chr3 151203089 151203382 -66833776 - AluJb SINE Alu -19 293 1 2255 99 0 3 chr3 151203394 151203687 -66833471 - AluSx SINE Alu -20 292 1 473 0 18 0 chr3 151203924 151203981 -66833177 + (TA)n Simple_repeat Simple_repeat 2 59 0 2638 209 41 13 chr3 151204035 151204576 -66832582 + MER68 LTR ERV1 1 556 -6 3402 170 113 52 chr3 151205129 151205745 -66831413 + MER106B DNA MER1_type 54 631 -428 1817 113 13 80 chr3 151205745 151206056 -66831102 - AluSq SINE Alu -22 291 2 3402 170 113 52 chr3 151206056 151206170 -66830988 + MER106B DNA MER1_type 631 737 -322 1833 138 20 36 chr3 151206170 151206474 -66830684 - AluJo SINE Alu -13 299 1 3402 170 113 52 chr3 151206474 151206690 -66830468 + MER106B DNA MER1_type 737 1059 0 27 0 0 0 chr3 151206996 151207023 -66830135 + AT_rich Low_complexity Low_complexity 1 27 0 1679 163 10 31 chr3 151207410 151207730 -66829428 - AluJb SINE Alu 0 314 1 1833 169 14 0 chr3 151207731 151208021 -66829137 - AluJb SINE Alu -18 294 1 30 0 0 0 chr3 151209145 151209175 -66827983 + AT_rich Low_complexity Low_complexity 1 30 0 882 125 0 29 chr3 151209351 151209487 -66827671 + AluSq/x SINE Alu 1 132 -181 1340 206 55 167 chr3 151209560 151209906 -66827252 + L1MC4 LINE L1 6459 6683 -1359 1646 153 0 67 chr3 151209906 151210206 -66826952 + AluJo SINE Alu 1 280 -32 1340 206 55 167 chr3 151210206 151210584 -66826574 + L1MC4 LINE L1 6683 7102 -940 544 138 0 0 chr3 151210599 151210679 -66826479 + FRAM SINE Alu 72 151 -25 459 0 0 0 chr3 151210679 151210730 -66826428 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 2223 241 74 42 chr3 151210731 151211487 -66825671 + L1MC4 LINE L1 7088 7867 -175 2398 78 3 7 chr3 151211487 151211796 -66825362 + AluSc SINE Alu 1 308 -1 186 118 0 0 chr3 151211915 151211949 -66825209 + (TA)n Simple_repeat Simple_repeat 1 34 0 1364 156 130 22 chr3 151212087 151212356 -66824802 - AluJo SINE Alu -4 298 1 21 57 0 0 chr3 151212713 151212748 -66824410 + AT_rich Low_complexity Low_complexity 1 35 0 349 270 0 0 chr3 151213537 151213626 -66823532 + L1MC4 LINE L1 6614 6702 -1340 1135 275 45 20 chr3 151213702 151214058 -66823100 + MLT1J LTR MaLR 1 365 -146 559 162 57 0 chr3 151214941 151215046 -66822112 - FLAM_A SINE Alu -12 130 20 279 0 0 0 chr3 151215137 151215168 -66821990 + (A)n Simple_repeat Simple_repeat 1 31 0 1619 193 7 3 chr3 151215723 151216018 -66821140 - AluJo SINE Alu -16 296 1 619 228 60 13 chr3 151216068 151216217 -66820941 + FRAM SINE Alu 2 157 -9 244 350 98 56 chr3 151216576 151216620 -66820538 - MIR3 SINE MIR -58 150 109 2383 80 7 0 chr3 151216620 151216922 -66820236 - AluSp SINE Alu -9 304 1 244 350 98 56 chr3 151216922 151217020 -66820138 - MIR3 SINE MIR -99 109 2 2116 136 13 0 chr3 151218218 151218526 -66818632 - AluJb SINE Alu 0 312 1 657 197 0 31 chr3 151218583 151218710 -66818448 - FLAM_A SINE Alu -10 123 1 694 179 0 0 chr3 151218931 151219037 -66818121 - FLAM_C SINE Alu -27 116 11 402 273 116 25 chr3 151219051 151219249 -66817909 + L1MC4a LINE L1 5513 5728 -2080 345 304 39 33 chr3 151219324 151219505 -66817653 + L1MC4a LINE L1 5842 6023 -1785 1660 141 18 39 chr3 151219858 151220142 -66817016 + AluJb SINE Alu 1 278 -34 180 0 0 0 chr3 151220145 151220165 -66816993 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 260 264 169 20 chr3 151220566 151220714 -66816444 + MIR SINE MIR 53 222 -40 2242 99 0 0 chr3 151220765 151221058 -66816100 + AluY SINE Alu 1 293 -18 2422 68 3 3 chr3 151221258 151221565 -66815593 + AluSp SINE Alu 1 307 -6 570 122 133 10 chr3 151221808 151221906 -66815252 + FLAM_C SINE Alu 10 119 -24 192 111 0 0 chr3 151221906 151221942 -66815216 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 34 84 0 0 chr3 151221996 151222079 -66815079 + AT_rich Low_complexity Low_complexity 1 83 0 2119 128 7 0 chr3 151222530 151222826 -66814332 - AluSx SINE Alu -14 298 1 856 154 0 0 chr3 151223142 151223272 -66813886 - FLAM_C SINE Alu -3 130 1 2164 117 3 3 chr3 151223350 151223650 -66813508 + AluSg SINE Alu 1 300 -10 869 282 108 0 chr3 151223801 151224106 -66813052 + MER46C DNA MER2_type 1 338 0 33 0 0 0 chr3 151225681 151225714 -66811444 + AT_rich Low_complexity Low_complexity 1 33 0 400 133 78 22 chr3 151225936 151226026 -66811132 + L1MC5 LINE L1 7835 7929 -32 2258 116 7 0 chr3 151226573 151226883 -66810275 + AluSx SINE Alu 1 312 0 2334 96 0 3 chr3 151226934 151227235 -66809923 + AluSc SINE Alu 1 300 -9 6258 88 22 44 chr3 151227495 151228883 -66808275 - L1PA14 LINE L1 0 6161 4776 1928 130 4 0 chr3 151229197 151229467 -66807691 - AluSx SINE Alu -5 307 37 195 307 74 51 chr3 151230103 151230399 -66806759 + L2 LINE L2 720 1022 -2292 1885 158 0 13 chr3 151230543 151230859 -66806299 + AluJb SINE Alu 1 312 0 2105 124 0 7 chr3 151231126 151231424 -66805734 - AluSq SINE Alu -17 296 1 324 0 0 0 chr3 151232181 151232217 -66804941 + (CA)n Simple_repeat Simple_repeat 2 37 0 205 244 0 0 chr3 151232499 151232544 -66804614 + MIR SINE MIR 218 262 0 1811 159 3 0 chr3 151233230 151233520 -66803638 + AluSx SINE Alu 3 293 -19 2439 252 77 41 chr3 151233935 151234690 -66802468 - MER21B LTR ERV1 -60 803 22 418 237 18 26 chr3 151234685 151234799 -66802359 - MER21B LTR ERV1 -750 113 1 * 215 93 209 0 chr3 151234894 151234937 -66802221 - L2 LINE L2 0 3313 3262 561 146 11 173 chr3 151234964 151235149 -66802009 + L1PB4 LINE L1 5990 6144 -12 1644 250 53 37 chr3 151235306 151236076 -66801082 - L1ME LINE L1 -4905 1175 423 1755 163 10 29 chr3 151236720 151237033 -66800125 + AluJb SINE Alu 1 307 -5 1018 248 183 7 chr3 151237212 151237670 -66799488 + MLT1E3 LTR MaLR 94 624 0 658 128 0 10 chr3 151237797 151237922 -66799236 - AluSp/q SINE Alu 0 313 197 409 20 0 0 chr3 151237922 151237973 -66799185 - AluY SINE Alu -206 95 45 673 121 0 0 chr3 151237973 151238072 -66799086 - AluS SINE Alu -214 99 1 1402 219 117 73 chr3 151238074 151238463 -66798695 + L1M4 LINE L1 3479 3850 -2296 2398 73 0 10 chr3 151238463 151238765 -66798393 + AluY SINE Alu 2 300 -11 1402 219 117 73 chr3 151238765 151238965 -66798193 + L1M4 LINE L1 3850 4040 -2106 2175 120 7 0 chr3 151238965 151239264 -66797894 + AluSx SINE Alu 1 301 -11 1266 190 44 161 chr3 151239271 151239860 -66797298 + MLT2B1 LTR ERVL 1 520 0 1402 219 117 73 chr3 151239860 151239955 -66797203 + L1M4 LINE L1 4045 4202 -1944 1615 185 7 30 chr3 151240607 151240904 -66796254 + AluJo SINE Alu 1 290 -22 1746 169 10 16 chr3 151241209 151241517 -66795641 - AluJb SINE Alu -6 306 1 23 33 0 0 chr3 151241567 151241597 -66795561 + AT_rich Low_complexity Low_complexity 1 30 0 2302 107 0 0 chr3 151241667 151241965 -66795193 + AluSg SINE Alu 1 298 -12 1042 185 63 66 chr3 151242029 151242348 -66794810 - L1MA9 LINE L1 -35 6277 5960 207 139 0 0 chr3 151242670 151242706 -66794452 + (GAAAA)n Simple_repeat Simple_repeat 2 37 0 688 207 44 39 chr3 151242812 151243015 -66794143 - L1MA9 LINE L1 -116 6196 5993 25 51 0 0 chr3 151243134 151243173 -66793985 + AT_rich Low_complexity Low_complexity 1 39 0 2552 48 0 0 chr3 151243563 151243852 -66793306 + AluY SINE Alu 3 291 -20 2093 138 14 0 chr3 151244916 151245213 -66791945 - AluJb SINE Alu -11 301 1 234 320 141 0 chr3 151245313 151245441 -66791717 - MIR SINE MIR -102 160 15 382 259 123 93 chr3 151246970 151247071 -66790087 + L1ME4a LINE L1 5787 5883 -238 2051 133 0 19 chr3 151247071 151247386 -66789772 + AluSx SINE Alu 1 309 -3 382 259 123 93 chr3 151247386 151247608 -66789550 + L1ME4a LINE L1 5883 6120 -1 189 0 0 0 chr3 151247608 151247629 -66789529 + (TA)n Simple_repeat Simple_repeat 1 21 0 2181 110 0 3 chr3 151248142 151248434 -66788724 - AluSg SINE Alu -19 291 1 1510 177 30 56 chr3 151248965 151249126 -66788032 + MLT1A1 LTR MaLR 1 153 -212 2128 110 4 0 chr3 151249126 151249407 -66787751 + AluSc SINE Alu 1 314 0 209 0 62 0 chr3 151249407 151249439 -66787719 + (TAAAA)n Simple_repeat Simple_repeat 2 180 0 1510 177 30 56 chr3 151249439 151249581 -66787577 + MLT1A1 LTR MaLR 153 297 -68 2148 117 7 3 chr3 151249581 151249888 -66787270 + AluSx SINE Alu 1 308 -4 1202 153 4 103 chr3 151249888 151250038 -66787120 + MLT1A1 LTR MaLR 148 268 -97 1786 160 4 4 chr3 151250038 151250348 -66786810 + AluSx SINE Alu 1 310 0 1202 153 4 103 chr3 151250348 151250438 -66786720 + MLT1A1 LTR MaLR 268 365 0 1487 178 74 0 chr3 151250623 151250893 -66786265 - AluJb SINE Alu -20 292 3 359 300 84 35 chr3 151251181 151251403 -66785755 + MIR SINE MIR 19 246 -16 2141 135 3 0 chr3 151251509 151251806 -66785352 + AluSx SINE Alu 1 298 -14 329 194 157 28 chr3 151252116 151252224 -66784934 - MER58C DNA MER1_type -8 207 86 22 56 0 0 chr3 151252479 151252515 -66784643 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr3 151252950 151252972 -66784186 + AT_rich Low_complexity Low_complexity 1 22 0 506 86 123 0 chr3 151253226 151253307 -66783851 + L1MC1 LINE L1 6243 6333 0 11431 118 43 75 chr3 151253449 151253515 -66783643 - Tigger2 DNA MER2_type -2 2716 2649 234 0 0 0 chr3 151253515 151253541 -66783617 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 1681 171 29 21 chr3 151253542 151253823 -66783335 - AluJo SINE Alu -29 283 1 11431 118 43 75 chr3 151253823 151254072 -66783086 - Tigger2 DNA MER2_type -69 2649 2393 2210 99 10 10 chr3 151254072 151254384 -66782774 + AluSx SINE Alu 1 312 0 11431 118 43 75 chr3 151254384 151255310 -66781848 - Tigger2 DNA MER2_type -325 2393 1439 2104 119 0 36 chr3 151255310 151255612 -66781546 + AluSx SINE Alu 1 291 -21 11431 118 43 75 chr3 151255612 151255935 -66781223 - Tigger2 DNA MER2_type -1279 1439 1107 1611 153 114 0 chr3 151255935 151256197 -66780961 + AluJo SINE Alu 1 292 -20 11431 118 43 75 chr3 151256197 151256349 -66780809 - Tigger2 DNA MER2_type -1611 1107 952 2459 61 0 3 chr3 151256349 151256644 -66780514 + AluY SINE Alu 1 294 -17 11431 118 43 75 chr3 151256644 151257025 -66780133 - Tigger2 DNA MER2_type -1766 952 681 495 0 0 0 chr3 151257025 151257080 -66780078 + (TA)n Simple_repeat Simple_repeat 2 56 0 415 197 0 0 chr3 151257083 151257154 -66780004 - FAM SINE Alu -72 113 43 3830 131 56 15 chr3 151257169 151257826 -66779332 - Tigger2 DNA MER2_type -2028 690 7 454 340 0 0 chr3 151257970 151258120 -66779038 + L1ME4a LINE L1 5446 5595 -2213 339 25 0 0 chr3 151258122 151258162 -66778996 + (CA)n Simple_repeat Simple_repeat 1 40 0 1357 170 72 11 chr3 151258207 151258472 -66778686 + MER89 LTR ERV1 279 559 0 243 217 145 0 chr3 151258501 151258584 -66778574 + L1ME4a LINE L1 5694 5788 -2020 428 372 50 19 chr3 151259228 151259771 -66777387 + L2 LINE L2 2507 3083 -189 1223 123 4 70 chr3 151259778 151259841 -66777317 - L1MA7 LINE L1 0 6291 6225 1950 142 3 20 chr3 151259841 151260143 -66777015 - AluJb SINE Alu -15 297 1 1223 123 4 70 chr3 151260143 151260322 -66776836 - L1MA7 LINE L1 -66 6225 6065 1605 97 12 57 chr3 151260324 151260571 -66776587 - MER1B DNA MER1_type -64 275 40 792 139 37 64 chr3 151260589 151260776 -66776382 - L1MA6 LINE L1 -218 6082 5901 2536 67 0 0 chr3 151261141 151261438 -66775720 + AluY SINE Alu 1 297 -14 24 0 0 0 chr3 151261573 151261597 -66775561 + AT_rich Low_complexity Low_complexity 1 24 0 2070 148 0 3 chr3 151261652 151261956 -66775202 + AluSx SINE Alu 1 303 -9 1135 173 0 0 chr3 151262510 151262695 -66774463 + AluSg/x SINE Alu 121 305 -7 402 194 0 41 chr3 151262753 151262851 -66774307 - MER53 DNA DNA -1 188 95 1051 184 42 24 chr3 151262989 151263201 -66773957 + AluJb SINE Alu 86 301 -11 2339 113 0 0 chr3 151263202 151263513 -66773645 + AluSx SINE Alu 1 311 -1 1698 157 92 0 chr3 151263513 151263794 -66773364 + AluJb SINE Alu 1 307 -5 258 282 51 43 chr3 151263965 151264082 -66773076 + L1ME4a LINE L1 5978 6095 -26 1388 155 29 50 chr3 151264159 151264436 -66772722 + AluJb SINE Alu 42 312 0 302 182 159 0 chr3 151265234 151265322 -66771836 - MER5C DNA MER1_type -1 323 222 877 136 0 0 chr3 151265323 151265441 -66771717 + FLAM_C SINE Alu 1 118 -25 27 0 0 0 chr3 151265441 151265468 -66771690 + AT_rich Low_complexity Low_complexity 1 27 0 587 200 33 0 chr3 151265520 151265640 -66771518 - MER5C DNA MER1_type -200 124 1 26 74 0 0 chr3 151265662 151265716 -66771442 + AT_rich Low_complexity Low_complexity 1 54 0 283 288 56 52 chr3 151265972 151266236 -66770922 + L1MC4a LINE L1 5656 5787 -377 21 0 0 0 chr3 151266391 151266412 -66770746 + AT_rich Low_complexity Low_complexity 1 21 0 1141 175 41 30 chr3 151266692 151267090 -66770068 + L1MB4 LINE L1 5028 5420 -763 2345 114 0 0 chr3 151267090 151267398 -66769760 + AluSc SINE Alu 1 308 -1 1141 175 41 30 chr3 151267398 151267445 -66769713 + L1MB4 LINE L1 5420 5479 -704 459 0 0 0 chr3 151267445 151267496 -66769662 + (CA)n Simple_repeat Simple_repeat 2 52 0 841 171 11 0 chr3 151267565 151267740 -66769418 + GA-rich Low_complexity Low_complexity 2 178 0 3245 161 75 14 chr3 151267740 151268397 -66768761 + L1MB4 LINE L1 5484 6180 0 227 269 0 0 chr3 151269617 151269669 -66767489 + (CATA)n Simple_repeat Simple_repeat 2 53 0 2400 71 0 7 chr3 151269916 151270213 -66766945 - AluY SINE Alu -16 295 1 1871 159 7 10 chr3 151270615 151270917 -66766241 + AluJo SINE Alu 1 301 -11 475 228 0 8 chr3 151270920 151271043 -66766115 + L1MC5 LINE L1 7116 7237 -724 501 223 65 65 chr3 151271198 151271445 -66765713 + L1MC5 LINE L1 7298 7544 -417 2235 116 0 0 chr3 151271479 151271780 -66765378 + AluSg SINE Alu 1 301 -9 1237 112 0 0 chr3 151271780 151271941 -66765217 + AluSg/x SINE Alu 132 292 -18 2253 118 0 6 chr3 151271954 151272267 -66764891 + AluSp SINE Alu 1 311 -2 199 219 0 0 chr3 151272587 151272628 -66764530 + L2 LINE L2 3268 3308 -5 1886 161 3 10 chr3 151272666 151272977 -66764181 + AluSx SINE Alu 1 309 -3 252 0 0 0 chr3 151273112 151273140 -66764018 + (TATG)n Simple_repeat Simple_repeat 2 29 0 2334 99 0 0 chr3 151273143 151273427 -66763731 - AluSg SINE Alu -26 284 1 2296 97 0 3 chr3 151273821 151274121 -66763037 + AluSg SINE Alu 1 299 -11 262 176 0 78 chr3 151274175 151274226 -66762932 + AluJ/FLAM SINE Alu 13 59 -243 32 43 0 0 chr3 151274334 151274380 -66762778 + AT_rich Low_complexity Low_complexity 1 46 0 2308 100 0 0 chr3 151274794 151275093 -66762065 + AluSg SINE Alu 1 299 -11 1776 170 7 10 chr3 151275130 151275436 -66761722 + AluJo SINE Alu 1 305 -7 607 202 0 0 chr3 151275450 151275554 -66761604 + FLAM_C SINE Alu 5 108 -35 2016 112 46 11 chr3 151276008 151276293 -66760865 + AluSx SINE Alu 1 295 -17 1669 165 0 39 chr3 151276524 151276809 -66760349 + AluJb SINE Alu 1 274 -38 1132 125 22 22 chr3 151277983 151278167 -66758991 + AluSg/x SINE Alu 127 310 0 454 282 75 44 chr3 151278167 151278394 -66758764 - MER20B DNA MER1_type -549 234 1 4199 222 70 85 chr3 151278412 151280194 -66756964 - MER52A LTR ERV1 0 1755 1 257 349 108 8 chr3 151280806 151280935 -66756223 - MIR3 SINE MIR -25 183 42 1825 95 0 4 chr3 151281391 151281623 -66755535 + AluY SINE Alu 1 231 -80 1749 236 56 66 chr3 151282008 151282251 -66754907 + MER20B DNA MER1_type 1 245 -538 463 198 34 174 chr3 151282251 151282319 -66754839 + MER5B DNA MER1_type 1 77 -101 1820 159 7 11 chr3 151282319 151282602 -66754556 - AluSx SINE Alu -30 282 1 463 198 34 174 chr3 151282602 151282740 -66754418 + MER5B DNA MER1_type 77 178 0 1749 236 56 66 chr3 151282740 151282930 -66754228 + MER20B DNA MER1_type 245 435 -348 2282 98 0 3 chr3 151282930 151283226 -66753932 - AluSc SINE Alu -14 295 1 1749 236 56 66 chr3 151283226 151283561 -66753597 + MER20B DNA MER1_type 435 762 -21 362 276 0 39 chr3 151283561 151283742 -66753416 - L2 LINE L2 -365 2949 2776 403 224 61 79 chr3 151283802 151283967 -66753191 - MIR3 SINE MIR -14 194 33 743 156 0 41 chr3 151284167 151284289 -66752869 - FLAM_A SINE Alu -16 117 1 752 208 34 45 chr3 151284322 151284500 -66752658 - AluJo SINE Alu -13 299 124 2277 91 0 20 chr3 151284769 151284928 -66752230 - AluSp SINE Alu -21 292 140 2541 48 7 3 chr3 151284928 151285238 -66751920 - AluY SINE Alu 0 311 1 2277 91 0 20 chr3 151285238 151285376 -66751782 - AluSp SINE Alu -173 140 1 2202 113 3 16 chr3 151285641 151285983 -66751175 - AluSq SINE Alu 0 313 1 25 0 0 0 chr3 151285985 151286010 -66751148 + AT_rich Low_complexity Low_complexity 1 25 0 1151 207 98 15 chr3 151286011 151286277 -66750881 - AluJb SINE Alu -24 288 1 1323 173 38 4 chr3 151287153 151287390 -66749768 + AluJb SINE Alu 1 245 -67 3476 83 14 30 chr3 151287393 151287888 -66749270 + MER41A LTR ERV1 2 488 -66 2497 60 0 0 chr3 151287888 151288188 -66748970 - AluY SINE Alu -9 302 3 1863 59 0 21 chr3 151288192 151288428 -66748730 - AluY SINE Alu -4 307 77 1457 59 0 91 chr3 151288428 151288647 -66748511 - AluY SINE Alu -32 279 81 2158 109 0 0 chr3 151288647 151288930 -66748228 - AluSx SINE Alu -28 284 2 37 0 0 0 chr3 151288981 151289018 -66748140 + AT_rich Low_complexity Low_complexity 1 37 0 1819 164 7 10 chr3 151289063 151289367 -66747791 + AluJo SINE Alu 1 303 -9 1880 150 0 80 chr3 151289370 151289709 -66747449 + AluSx SINE Alu 1 312 0 30 27 0 0 chr3 151289934 151289971 -66747187 + AT_rich Low_complexity Low_complexity 1 37 0 366 345 31 11 chr3 151289997 151290188 -66746970 - L2 LINE L2 -221 3051 2857 459 260 51 110 chr3 151290198 151290462 -66746696 + MLT1I LTR MaLR 1 230 -179 1882 103 4 0 chr3 151290462 151290705 -66746453 + AluSx SINE Alu 3 246 -66 459 260 51 110 chr3 151290705 151290875 -66746283 + MLT1I LTR MaLR 230 409 0 2424 86 0 6 chr3 151290928 151291241 -66745917 - AluSq SINE Alu -2 311 1 1812 152 3 20 chr3 151291244 151291406 -66745752 - AluJo SINE Alu -20 292 136 2476 91 0 0 chr3 151291406 151291713 -66745445 - AluY SINE Alu -2 309 3 1812 152 3 20 chr3 151291713 151291847 -66745311 - AluJo SINE Alu -176 136 1 800 120 0 0 chr3 151292014 151292122 -66745036 + AluSg/x SINE Alu 190 297 -13 1933 139 0 29 chr3 151292189 151292505 -66744653 - AluSx SINE Alu -5 307 1 1077 111 0 0 chr3 151292505 151292640 -66744518 - AluSq/x SINE Alu -178 135 1 23 0 0 0 chr3 151292649 151292672 -66744486 + AT_rich Low_complexity Low_complexity 1 23 0 845 188 79 0 chr3 151292678 151292843 -66744315 + FRAM SINE Alu 1 173 -3 1774 149 17 10 chr3 151292853 151293141 -66744017 + AluSx SINE Alu 1 290 -22 281 236 69 0 chr3 151293178 151293250 -66743908 + L2 LINE L2 3221 3297 -16 2328 91 7 3 chr3 151293251 151293558 -66743600 - AluSg SINE Alu -2 308 1 903 197 26 0 chr3 151293562 151293714 -66743444 - AluJb SINE Alu -20 292 137 2261 83 20 13 chr3 151293717 151294017 -66743141 - AluY SINE Alu -5 306 5 327 213 0 25 chr3 151294028 151294108 -66743050 - MIR SINE MIR -67 141 64 468 252 0 28 chr3 151294698 151294805 -66742353 - FLAM_A SINE Alu -37 105 2 557 180 195 16 chr3 151294868 151294996 -66742162 - AluJb SINE Alu -30 282 132 1828 148 3 27 chr3 151294996 151295294 -66741864 - AluSx SINE Alu 0 312 22 806 174 0 0 chr3 151295418 151295539 -66741619 + FLAM_C SINE Alu 3 123 -20 21 0 0 0 chr3 151295539 151295560 -66741598 + AT_rich Low_complexity Low_complexity 1 21 0 186 167 0 0 chr3 151295664 151295700 -66741458 + (CATA)n Simple_repeat Simple_repeat 4 39 0 281 250 120 0 chr3 151295760 151295789 -66741369 + L1MC4a LINE L1 5797 5821 -1987 2251 106 3 3 chr3 151295789 151296090 -66741068 + AluSg SINE Alu 1 301 -9 281 250 120 0 chr3 151296090 151296152 -66741006 + L1MC4a LINE L1 5821 5899 -1909 2250 101 3 0 chr3 151296380 151296668 -66740490 + AluSg SINE Alu 1 289 -21 2293 111 0 0 chr3 151296715 151297013 -66740145 + AluSg SINE Alu 1 298 -12 248 104 104 0 chr3 151297014 151297062 -66740096 + Alu SINE Alu 256 308 0 1837 164 3 13 chr3 151297225 151297537 -66739621 - AluJb SINE Alu -3 309 1 2332 84 3 10 chr3 151297544 151297855 -66739303 - AluSx SINE Alu -3 309 1 778 225 0 12 chr3 151297869 151298029 -66739129 + AluJb SINE Alu 132 289 -23 22 35 0 0 chr3 151298165 151298194 -66738964 + AT_rich Low_complexity Low_complexity 1 29 0 641 245 151 49 chr3 151298636 151299006 -66738152 + MLT1J2 LTR MaLR 44 508 -3 1428 179 17 8 chr3 151299378 151299618 -66737540 - AluJo SINE Alu -9 303 62 387 277 45 74 chr3 151299755 151299794 -66737364 + L2 LINE L2 2618 2657 -657 1934 112 0 15 chr3 151299794 151300062 -66737096 - AluSg SINE Alu -11 299 36 387 277 45 74 chr3 151300062 151300224 -66736934 + L2 LINE L2 2657 2813 -501 1786 154 0 19 chr3 151300279 151300597 -66736561 - AluJb SINE Alu 0 312 1 2008 122 0 3 chr3 151300618 151300906 -66736252 - AluSx SINE Alu -25 287 1 1377 199 13 35 chr3 151301429 151301569 -66735589 + AluJo SINE Alu 1 143 -169 2220 82 20 10 chr3 151301569 151301875 -66735283 + AluSc SINE Alu 1 309 0 1377 199 13 35 chr3 151301875 151302051 -66735107 + AluJo SINE Alu 143 310 -2 323 309 10 0 chr3 151302051 151302072 -66735086 + GA-rich Low_complexity Low_complexity 2 21 -78 2019 121 13 19 chr3 151302072 151302386 -66734772 + AluSx SINE Alu 1 312 0 323 309 10 0 chr3 151302386 151302461 -66734697 + GA-rich Low_complexity Low_complexity 21 99 0 441 256 99 52 chr3 151302469 151302641 -66734517 - Charlie1b DNA MER1_type -339 184 5 214 304 51 0 chr3 151302782 151302861 -66734297 + L2 LINE L2 3188 3270 -2 658 140 168 0 chr3 151304023 151304130 -66733028 + FLAM_C SINE Alu 2 126 -17 1564 170 23 10 chr3 151304212 151304512 -66732646 + AluJo SINE Alu 1 304 -8 2386 64 0 3 chr3 151304723 151305021 -66732137 + AluY SINE Alu 1 297 -14 1050 121 0 0 chr3 151305033 151305190 -66731968 + AluSx SINE Alu 1 157 -155 282 277 62 62 chr3 151305339 151305469 -66731689 + L2 LINE L2 3121 3250 -22 1403 167 22 26 chr3 151306712 151307154 -66730004 + AluSx SINE Alu 3 443 0 764 158 153 11 chr3 151307165 151307348 -66729810 + AluSx SINE Alu 9 217 -95 445 273 17 6 chr3 151307349 151307521 -66729637 + AluSp SINE Alu 78 251 -52 1852 167 13 0 chr3 151307660 151307966 -66729192 - AluSx SINE Alu -2 310 1 311 346 15 10 chr3 151307975 151308177 -66728981 - L1ME LINE L1 -297 5824 5622 772 138 19 100 chr3 151308178 151308388 -66728770 + AluYa5 SINE Alu 2 194 -117 1342 138 13 17 chr3 151309140 151309371 -66727787 - AluSx SINE Alu -82 230 1 1760 138 39 0 chr3 151310448 151310731 -66726427 - AluJb SINE Alu -17 295 2 756 235 33 114 chr3 151310822 151311257 -66725901 + L2 LINE L2 2755 3156 -157 343 196 0 0 chr3 151311281 151311337 -66725821 - MER2 DNA MER2_type -10 335 280 1119 141 0 0 chr3 151311346 151311516 -66725642 + AluSg/x SINE Alu 135 304 -6 710 84 19 9 chr3 151311538 151311645 -66725513 - MER2 DNA MER2_type -84 261 154 962 161 6 0 chr3 151311679 151311841 -66725317 - AluJb SINE Alu -18 294 132 863 228 0 0 chr3 151312097 151312259 -66724899 - AluJo SINE Alu -33 279 118 252 211 0 0 chr3 151312377 151312429 -66724729 - L2 LINE L2 -8 3264 3213 546 325 77 62 chr3 151312534 151312619 -66724539 - L2 LINE L2 -229 3043 2961 1956 141 0 0 chr3 151312619 151312916 -66724242 + AluSx SINE Alu 2 298 -14 546 325 77 62 chr3 151312916 151313030 -66724128 - L2 LINE L2 -311 2961 2850 802 168 0 0 chr3 151313030 151313155 -66724003 + FLAM_C SINE Alu 1 125 -8 546 325 77 62 chr3 151313155 151313242 -66723916 - L2 LINE L2 -422 2850 2766 1954 121 0 3 chr3 151313242 151313555 -66723603 - AluSq SINE Alu 0 313 2 546 325 77 62 chr3 151313555 151313702 -66723456 - L2 LINE L2 -506 2766 2593 217 234 0 21 chr3 151313703 151313750 -66723408 - L2 LINE L2 -2035 1279 1234 499 287 33 7 chr3 151313893 151314043 -66723115 - L2 LINE L2 -2 3311 3158 776 210 14 0 chr3 151314043 151314186 -66722972 + MER2 DNA MER2_type 2 146 -199 610 161 192 23 chr3 151314194 151314324 -66722834 + FRAM SINE Alu 4 155 -21 2294 82 0 7 chr3 151314331 151314637 -66722521 + AluSx SINE Alu 1 304 -8 1965 125 7 13 chr3 151314637 151314940 -66722218 + AluSx SINE Alu 1 301 -11 310 333 29 34 chr3 151315081 151315285 -66721873 + L2 LINE L2 1812 2014 -1300 2311 85 0 7 chr3 151315394 151315700 -66721458 + AluSx SINE Alu 2 305 -7 297 196 18 0 chr3 151316080 151316136 -66721022 - MER45A DNA AcHobo 0 178 122 811 186 21 0 chr3 151316601 151316741 -66720417 - MER45A DNA AcHobo -35 143 1 332 229 62 21 chr3 151316752 151316848 -66720310 - L1M4 LINE L1 -891 5255 5156 520 77 8 179 chr3 151316962 151317079 -66720079 + L1MC1 LINE L1 6209 6305 -28 849 212 26 16 chr3 151317080 151317269 -66719889 + AluSg/x SINE Alu 116 306 -6 344 256 67 148 chr3 151317343 151317447 -66719711 + L1MC4a LINE L1 5872 5983 -1825 1874 143 10 3 chr3 151317447 151317755 -66719403 - AluSg SINE Alu 0 310 1 344 256 67 148 chr3 151317755 151318041 -66719117 + L1MC4a LINE L1 5983 6230 -1578 1406 163 24 31 chr3 151318239 151318527 -66718631 + AluSx SINE Alu 1 286 -26 272 158 18 0 chr3 151318527 151318584 -66718574 + (TA)n Simple_repeat Simple_repeat 1 58 0 2420 47 0 3 chr3 151318876 151319176 -66717982 + AluY SINE Alu 1 299 -12 558 131 40 0 chr3 151319199 151319298 -66717860 + AluSg/x SINE Alu 204 306 -3 184 336 19 29 chr3 151319554 151319658 -66717500 + L3 LINE CR1 1473 1575 -2 184 315 37 0 chr3 151319684 151319738 -66717420 + L2 LINE L2 3178 3233 -80 1937 126 0 7 chr3 151319945 151320239 -66716919 + AluSc SINE Alu 1 292 -17 1418 171 23 39 chr3 151320481 151320613 -66716545 + AluJo SINE Alu 1 134 -178 2338 80 0 0 chr3 151320613 151320912 -66716246 + AluSq SINE Alu 3 301 -12 1418 171 23 39 chr3 151320912 151321089 -66716069 + AluJo SINE Alu 134 305 -7 2069 129 0 3 chr3 151321145 151321455 -66715703 - AluSg SINE Alu -1 309 1 199 0 0 61 chr3 151321457 151321490 -66715668 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 2014 70 56 0 chr3 151321492 151321762 -66715396 - AluY SINE Alu -26 285 1 1871 143 3 34 chr3 151321765 151322129 -66715029 - AluSx SINE Alu 0 354 1 1608 151 0 73 chr3 151322131 151322448 -66714710 - AluJo SINE Alu -18 294 1 393 206 87 31 chr3 151322498 151322649 -66714509 + MLT1H LTR MaLR 369 523 -26 2079 77 7 0 chr3 151322683 151322957 -66714201 + AluSx SINE Alu 27 302 -10 1681 154 0 57 chr3 151323147 151323292 -66713866 + AluJo SINE Alu 2 121 -181 1569 119 61 71 chr3 151323292 151323433 -66713725 + AluSx SINE Alu 5 146 -166 2203 102 0 3 chr3 151323433 151323737 -66713421 + AluSp SINE Alu 1 303 -10 1569 119 61 71 chr3 151323737 151323889 -66713269 + AluSx SINE Alu 146 295 -17 1681 154 0 57 chr3 151323889 151324061 -66713097 + AluJo SINE Alu 121 301 -1 383 234 11 11 chr3 151325638 151325732 -66711426 + AluJb SINE Alu 120 213 -89 431 279 29 82 chr3 151325845 151326053 -66711105 - L2 LINE L2 -1 3271 3075 898 185 6 0 chr3 151326418 151326591 -66710567 - FRAM SINE Alu -3 173 1 1422 148 3 142 chr3 151327082 151327420 -66709738 + AluJo SINE Alu 1 291 -11 1961 130 3 7 chr3 151327902 151328202 -66708956 - AluSq SINE Alu -14 299 1 1584 189 24 0 chr3 151328438 151328734 -66708424 - AluJb SINE Alu -9 303 1 1842 152 3 7 chr3 151328913 151329216 -66707942 - AluJb SINE Alu -8 304 3 2333 82 0 0 chr3 151329338 151329643 -66707515 - AluSp SINE Alu -8 305 1 186 279 165 0 chr3 151329803 151329882 -66707276 + L2 LINE L2 3184 3275 -38 231 326 30 52 chr3 151329914 151330049 -66707109 + L2 LINE L2 2461 2592 -722 2321 85 0 0 chr3 151330063 151330369 -66706789 - AluSg SINE Alu -3 307 2 357 93 0 0 chr3 151330466 151330520 -66706638 + (GA)n Simple_repeat Simple_repeat 1 54 0 189 0 0 0 chr3 151330654 151330675 -66706483 + (T)n Simple_repeat Simple_repeat 1 21 0 760 227 12 25 chr3 151330709 151330919 -66706239 + AluJo SINE Alu 126 333 0 597 285 89 74 chr3 151331038 151331442 -66705716 - MLT1K LTR MaLR -118 470 61 1833 127 7 34 chr3 151331496 151331811 -66705347 - AluSx SINE Alu 0 307 1 1747 151 7 17 chr3 151331841 151332139 -66705019 - AluJb SINE Alu -7 305 11 1050 128 55 0 chr3 151332156 151332320 -66704838 - AluJb SINE Alu -3 309 137 461 263 23 80 chr3 151332320 151332495 -66704663 + L2 LINE L2 2906 3070 -202 1430 208 27 0 chr3 151332556 151332849 -66704309 + AluJb SINE Alu 1 301 -11 1679 157 0 55 chr3 151332854 151333142 -66704016 + AluJo SINE Alu 1 271 -41 209 32 0 32 chr3 151333142 151333173 -66703985 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1679 157 0 55 chr3 151333173 151333209 -66703949 + AluJo SINE Alu 271 307 -5 316 199 64 140 chr3 151333210 151333381 -66703777 - MER112 DNA MER1_type -97 163 6 195 100 0 0 chr3 151333696 151333726 -66703432 + (T)n Simple_repeat Simple_repeat 1 30 0 1916 136 10 3 chr3 151334048 151334343 -66702815 + AluSx SINE Alu 1 297 -15 1667 145 0 21 chr3 151334427 151334710 -66702448 - AluSq SINE Alu -32 281 5 183 391 113 0 chr3 151334738 151334853 -66702305 - L2 LINE L2 0 3272 3145 2111 108 3 0 chr3 151334901 151335198 -66701960 + AluSx SINE Alu 1 298 -14 1086 140 5 16 chr3 151335202 151335420 -66701738 + AluSq SINE Alu 125 313 0 2150 91 0 20 chr3 151335685 151335823 -66701335 + AluSp SINE Alu 1 140 -173 2412 48 7 3 chr3 151335823 151336133 -66701025 + AluY SINE Alu 1 311 0 2150 91 0 20 chr3 151336133 151336292 -66700866 + AluSp SINE Alu 140 292 -21 760 205 37 25 chr3 151336578 151336739 -66700419 + FRAM SINE Alu 1 163 -13 750 156 0 41 chr3 151336772 151336894 -66700264 + FLAM_A SINE Alu 1 117 -16 463 224 61 79 chr3 151337094 151337259 -66699899 + MIR3 SINE MIR 33 194 -14 417 308 15 46 chr3 151337237 151337500 -66699658 + L2 LINE L2 2695 2949 -365 * 1763 237 56 64 chr3 151337500 151337833 -66699325 - MER20B DNA MER1_type -21 762 428 2086 102 3 3 chr3 151337833 151338128 -66699030 + AluSc SINE Alu 1 295 -14 1763 237 56 64 chr3 151338128 151338318 -66698840 - MER20B DNA MER1_type -355 428 238 454 198 34 174 chr3 151338318 151338456 -66698702 - MER5B DNA MER1_type 0 178 77 1703 159 7 11 chr3 151338456 151338739 -66698419 + AluSx SINE Alu 1 282 -30 454 198 34 174 chr3 151338739 151338807 -66698351 - MER5B DNA MER1_type -101 77 1 1763 237 56 64 chr3 151338807 151339050 -66698108 - MER20B DNA MER1_type -545 238 1 333 305 51 51 chr3 151339168 151339248 -66697910 - L1ME4a LINE L1 -208 5913 5834 1953 161 0 0 chr3 151339248 151339559 -66697599 - AluSx SINE Alu -1 311 1 333 305 51 51 chr3 151339559 151339770 -66697388 - L1ME4a LINE L1 -286 5835 5622 2366 78 3 0 chr3 151339770 151340077 -66697081 + AluSc SINE Alu 1 308 -1 521 153 82 0 chr3 151340089 151340187 -66696971 + AluSp SINE Alu 2 107 -206 2017 137 0 0 chr3 151340270 151340576 -66696582 + AluSx SINE Alu 3 308 -4 1495 186 49 0 chr3 151340635 151340920 -66696238 + AluJb SINE Alu 1 299 -13 1774 122 35 48 chr3 151341017 151341328 -66695830 + AluSg SINE Alu 1 307 -3 1610 90 64 4 chr3 151341339 151341573 -66695585 + AluSx SINE Alu 1 248 -64 373 123 6 61 chr3 151341574 151341737 -66695421 + (TA)n Simple_repeat Simple_repeat 2 155 0 405 59 0 0 chr3 151341738 151341789 -66695369 - AluSg/x SINE Alu -64 248 198 661 157 9 0 chr3 151341925 151342040 -66695118 + FLAM_A SINE Alu 20 135 -7 2198 90 0 0 chr3 151342188 151342487 -66694671 + AluSc SINE Alu 1 299 -10 445 103 0 15 chr3 151343279 151343347 -66693811 + AluS SINE Alu 2 68 -245 831 118 0 8 chr3 151343351 151343478 -66693680 + AluSp/q SINE Alu 177 302 -11 1525 150 27 60 chr3 151343532 151343832 -66693326 + AluJb SINE Alu 1 290 -22 198 0 0 0 chr3 151345265 151345287 -66691871 + (T)n Simple_repeat Simple_repeat 1 22 0 2120 85 4 4 chr3 151345552 151345833 -66691325 + AluSq SINE Alu 1 281 -32 216 0 0 0 chr3 151345833 151345857 -66691301 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 1293 194 0 83 chr3 151346138 151346463 -66690695 + AluJo SINE Alu 1 298 -4 2204 73 3 32 chr3 151346463 151346779 -66690379 + AluY SINE Alu 1 307 -4 2347 52 3 0 chr3 151346987 151347275 -66689883 - AluY SINE Alu -22 289 1 444 229 59 34 chr3 151347286 151347404 -66689754 - L2 LINE L2 -37 3276 3156 795 201 38 0 chr3 151347408 151347567 -66689591 + FAM SINE Alu 1 165 -10 2144 92 3 43 chr3 151347567 151347892 -66689266 - AluSq SINE Alu -1 312 1 27 0 0 0 chr3 151347892 151347919 -66689239 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr3 151347948 151347970 -66689188 + AT_rich Low_complexity Low_complexity 1 22 0 492 157 20 39 chr3 151347970 151348072 -66689086 + FLAM_A SINE Alu 43 142 0 406 273 273 43 chr3 151348091 151348369 -66688789 - L2 LINE L2 -527 2787 2446 1293 83 0 0 chr3 151348428 151348596 -66688562 + AluSq SINE Alu 134 301 -12 200 262 143 124 chr3 151348599 151348969 -66688189 - L2 LINE L2 -920 2394 2018 2021 99 0 7 chr3 151349060 151349368 -66687790 + AluSx SINE Alu 3 308 0 2131 57 14 14 chr3 151349412 151349745 -66687413 + AluY SINE Alu 1 333 0 1638 88 112 19 chr3 151349792 151350097 -66687061 + AluY SINE Alu 1 329 0 2083 81 29 19 chr3 151350103 151350411 -66686747 + AluSq SINE Alu 2 312 -1 23 0 0 0 chr3 151350411 151350434 -66686724 + AT_rich Low_complexity Low_complexity 1 23 0 1963 116 20 0 chr3 151350436 151350730 -66686428 + AluSc SINE Alu 1 300 -9 1870 130 3 39 chr3 151351201 151351337 -66685821 + AluSx SINE Alu 1 140 -172 2229 84 10 13 chr3 151351337 151351645 -66685513 + AluSp SINE Alu 1 307 -6 1870 130 3 39 chr3 151351645 151351816 -66685342 + AluSx SINE Alu 140 297 -15 2610 49 0 3 chr3 151351970 151352274 -66684884 - AluY SINE Alu -8 303 1 995 193 100 129 chr3 151352926 151353237 -66683921 + AluJo SINE Alu 1 302 0 1200 188 0 28 chr3 151353266 151353479 -66683679 + AluJo SINE Alu 1 207 -105 2301 108 3 0 chr3 151353549 151353844 -66683314 + AluSx SINE Alu 1 296 -16 1831 138 3 66 chr3 151354228 151354380 -66682778 + AluJb SINE Alu 1 124 -188 2506 60 33 0 chr3 151354380 151354680 -66682478 + AluY SINE Alu 1 310 -1 1831 138 3 66 chr3 151354680 151354847 -66682311 + AluJb SINE Alu 124 300 -12 243 139 23 0 chr3 151355057 151355100 -66682058 - MLT1K LTR MaLR -20 568 525 1903 80 117 11 chr3 151355642 151355916 -66681242 - AluSg1 SINE Alu -6 303 1 310 301 171 0 chr3 151356067 151356213 -66680945 + MIR SINE MIR 80 250 -12 601 306 54 5 chr3 151356510 151356696 -66680462 + L3 LINE CR1 351 545 -1032 295 219 21 52 chr3 151356833 151356929 -66680229 - L2 LINE L2 0 3313 3221 899 158 0 0 chr3 151356946 151357079 -66680079 + FLAM_C SINE Alu 1 133 0 23 0 0 0 chr3 151357099 151357122 -66680036 + AT_rich Low_complexity Low_complexity 1 23 0 1772 169 7 10 chr3 151357129 151357424 -66679734 + AluJb SINE Alu 1 294 -18 317 273 71 10 chr3 151357428 151357527 -66679631 + L1M4 LINE L1 4500 4604 -1542 1291 155 5 19 chr3 151357602 151357808 -66679350 - AluJo SINE Alu -61 251 49 1991 116 0 34 chr3 151357826 151358160 -66678998 + AluSx SINE Alu 1 324 0 253 320 0 0 chr3 151358195 151358298 -66678860 + L1M4 LINE L1 4888 4990 -1156 3767 92 53 22 chr3 151358319 151358903 -66678255 - LTR10E LTR ERV1 -31 602 1 2239 109 3 13 chr3 151358966 151359270 -66677888 - AluSp SINE Alu -12 301 1 2054 126 16 7 chr3 151359381 151359821 -66677337 + AluSx SINE Alu 1 443 0 1810 92 77 18 chr3 151359832 151359940 -66677218 + AluSq SINE Alu 9 109 -204 2344 102 3 0 chr3 151359940 151360243 -66676915 + AluSp SINE Alu 1 304 -9 1810 92 77 18 chr3 151360243 151360406 -66676752 + AluSq SINE Alu 109 296 -17 2214 98 7 7 chr3 151360525 151360848 -66676310 - AluSc SINE Alu 0 309 1 2092 127 7 0 chr3 151361025 151361316 -66675842 + AluSx SINE Alu 1 293 -19 2114 143 7 0 chr3 151361972 151362279 -66674879 + AluJb SINE Alu 1 309 -3 524 273 0 0 chr3 151362289 151362417 -66674741 + L1MD2 LINE L1 5693 5820 -1988 1644 204 3 10 chr3 151362435 151362729 -66674429 + AluJb SINE Alu 5 296 -16 1357 155 3 152 chr3 151363169 151363517 -66673641 + AluJb SINE Alu 1 296 -6 261 83 0 0 chr3 151363536 151363572 -66673586 + (TC)n Simple_repeat Simple_repeat 2 37 0 218 224 56 16 chr3 151363572 151363697 -66673461 + (TA)n Simple_repeat Simple_repeat 2 131 0 271 278 13 60 chr3 151363709 151363824 -66673334 + L1M4 LINE L1 5052 5160 -986 2123 95 42 14 chr3 151363824 151364107 -66673051 + AluSx SINE Alu 1 291 -21 271 278 13 60 chr3 151364107 151364142 -66673016 + L1M4 LINE L1 5160 5195 -951 2557 77 0 0 chr3 151364144 151364457 -66672701 + AluSq SINE Alu 1 313 0 677 204 85 25 chr3 151364457 151364830 -66672328 + L1MC4a LINE L1 6453 6802 -1006 240 86 0 0 chr3 151364830 151364865 -66672293 + (CA)n Simple_repeat Simple_repeat 2 36 0 677 204 85 25 chr3 151364865 151365457 -66671701 + L1MC4a LINE L1 6802 7357 -451 2398 63 0 7 chr3 151365457 151365763 -66671395 + AluY SINE Alu 1 304 0 2127 112 6 53 chr3 151365766 151366087 -66671071 + AluSg SINE Alu 1 306 -4 677 204 85 25 chr3 151366087 151366245 -66670913 + L1MC4a LINE L1 7358 7713 -95 2260 96 7 0 chr3 151366253 151366544 -66670614 - AluSg SINE Alu -17 293 1 1848 196 77 32 chr3 151366563 151366627 -66670531 + L1MD2 LINE L1 5827 5887 -472 1748 187 3 10 chr3 151366627 151366926 -66670232 + AluJo SINE Alu 1 297 -15 1848 196 77 32 chr3 151366926 151367060 -66670098 + L1MD2 LINE L1 5887 6014 -345 2259 95 7 14 chr3 151367060 151367355 -66669803 - AluSg SINE Alu -17 293 1 2230 115 0 3 chr3 151367355 151367649 -66669509 - AluSx SINE Alu -18 294 1 1848 196 77 32 chr3 151367649 151367943 -66669215 + L1MD2 LINE L1 6013 6343 -16 2398 59 49 0 chr3 151368251 151368537 -66668621 - AluY SINE Alu -11 300 1 197 302 0 0 chr3 151368538 151368581 -66668577 - MIR SINE MIR -17 245 203 373 286 185 11 chr3 151368814 151368992 -66668166 - MIR SINE MIR -20 242 34 2039 140 7 0 chr3 151369020 151369313 -66667845 + AluSx SINE Alu 5 299 -13 188 250 19 19 chr3 151369328 151369380 -66667778 + L2 LINE L2 74 125 -3189 1902 143 0 40 chr3 151369552 151369676 -66667482 + AluJb SINE Alu 13 140 -172 2616 54 0 16 chr3 151369676 151369983 -66667175 + AluY SINE Alu 1 304 -7 240 35 0 0 chr3 151369983 151370012 -66667146 + (TA)n Simple_repeat Simple_repeat 2 30 0 1902 143 0 40 chr3 151370020 151370196 -66666962 + AluJb SINE Alu 140 301 -11 232 283 91 11 chr3 151370279 151370466 -66666692 + L1MC/D LINE L1 5722 5923 -1885 835 177 0 0 chr3 151370544 151370674 -66666484 - MER2 DNA MER2_type -212 133 4 1607 172 86 10 chr3 151370840 151371130 -66666028 + AluJb SINE Alu 1 312 0 2434 82 3 22 chr3 151371132 151371449 -66665709 + AluSx SINE Alu 1 311 -1 2024 72 69 32 chr3 151371450 151371796 -66665362 + MER4-int LTR ERV1 6033 6391 -207 329 194 65 11 chr3 151371935 151372028 -66665130 + L1M4 LINE L1 3693 3790 -2356 1437 225 17 3 chr3 151372028 151372330 -66664828 - MER68 LTR ERV1 0 562 257 23 0 0 0 chr3 151372330 151372353 -66664805 + AT_rich Low_complexity Low_complexity 1 23 0 1438 162 4 29 chr3 151372356 151372597 -66664561 - AluJb SINE Alu -77 235 1 1446 163 55 0 chr3 151372597 151372854 -66664304 - MER68 LTR ERV1 -291 271 1 1502 222 69 19 chr3 151372858 151373281 -66663877 + L1M4 LINE L1 3790 4233 -1913 248 240 65 58 chr3 151373454 151373608 -66663550 + LTR40c LTR ERVL 142 296 -169 2407 92 3 3 chr3 151374176 151374481 -66662677 + AluSq SINE Alu 1 305 -8 2446 81 0 16 chr3 151374585 151374895 -66662263 + AluY SINE Alu 1 305 -6 1273 115 0 6 chr3 151374896 151375070 -66662088 + AluSg/x SINE Alu 125 297 -15 884 139 42 0 chr3 151375070 151375214 -66661944 + MSTB LTR MaLR 241 390 -36 298 173 0 0 chr3 151375227 151375279 -66661879 - Alu SINE Alu -12 290 239 1957 165 10 0 chr3 151375447 151375756 -66661402 + AluJb SINE Alu 1 312 0 2244 133 3 0 chr3 151375761 151376070 -66661088 + AluSx SINE Alu 1 310 -2 1209 292 59 14 chr3 151376080 151376641 -66660517 - L1MC4a LINE L1 -1937 5871 5286 995 83 0 62 chr3 151376674 151376818 -66660340 + AluSq/x SINE Alu 1 135 -177 1889 135 0 30 chr3 151376818 151377134 -66660024 + AluSx SINE Alu 1 312 0 2131 121 0 7 chr3 151377201 151377498 -66659660 - AluSg SINE Alu -13 297 3 1879 59 0 21 chr3 151377502 151377738 -66659420 - AluY SINE Alu -4 307 77 1426 59 0 96 chr3 151377738 151377958 -66659200 - AluY SINE Alu -32 279 81 2169 109 0 0 chr3 151377958 151378241 -66658917 - AluSx SINE Alu -28 284 2 37 0 0 0 chr3 151378292 151378329 -66658829 + AT_rich Low_complexity Low_complexity 1 37 0 1852 164 7 10 chr3 151378374 151378678 -66658480 + AluJo SINE Alu 1 303 -9 1921 150 0 80 chr3 151378681 151379020 -66658138 + AluSx SINE Alu 1 312 0 204 305 110 0 chr3 151379027 151379109 -66658049 - L2 LINE L2 -48 3224 3134 30 27 0 0 chr3 151379245 151379282 -66657876 + AT_rich Low_complexity Low_complexity 1 37 0 426 345 31 11 chr3 151379308 151379499 -66657659 - L2 LINE L2 -221 3051 2857 487 254 58 115 chr3 151379509 151379772 -66657386 + MLT1I LTR MaLR 1 231 -178 1893 103 4 0 chr3 151379772 151380015 -66657143 + AluSx SINE Alu 3 246 -66 487 254 58 115 chr3 151380015 151380185 -66656973 + MLT1I LTR MaLR 231 409 0 2409 102 0 0 chr3 151380238 151380551 -66656607 - AluSq SINE Alu 0 313 1 1770 168 3 20 chr3 151380554 151380716 -66656442 - AluJo SINE Alu -20 292 136 2499 91 0 0 chr3 151380716 151381023 -66656135 - AluY SINE Alu -2 309 3 1770 168 3 20 chr3 151381023 151381157 -66656001 - AluJo SINE Alu -176 136 1 236 158 298 0 chr3 151381269 151381326 -66655832 - FRAM/FAM SINE Alu -85 81 8 2135 127 3 3 chr3 151381455 151381754 -66655404 - AluSx SINE Alu -13 299 1 502 238 155 30 chr3 151381755 151381923 -66655235 - MIR SINE MIR -17 245 57 303 171 9 48 chr3 151382035 151382140 -66655018 + (TA)n Simple_repeat Simple_repeat 2 102 0 1720 90 64 4 chr3 151382141 151382375 -66654783 - AluSx SINE Alu -64 248 1 1919 122 35 48 chr3 151382386 151382697 -66654461 - AluSg SINE Alu -3 307 1 1636 186 49 0 chr3 151382794 151383079 -66654079 - AluJb SINE Alu -13 299 1 2172 137 0 0 chr3 151383138 151383444 -66653714 - AluSx SINE Alu -4 308 3 995 206 0 49 chr3 151383549 151383637 -66653521 - AluJo SINE Alu -100 212 121 2502 79 3 0 chr3 151383637 151383942 -66653216 - AluSc SINE Alu -1 308 3 995 206 0 49 chr3 151383942 151384076 -66653082 - AluJo SINE Alu -191 121 1 236 158 298 0 chr3 151384188 151384245 -66652913 - FRAM/FAM SINE Alu -85 81 8 2135 127 3 3 chr3 151384374 151384673 -66652485 - AluSx SINE Alu -13 299 1 533 259 143 26 chr3 151384674 151384863 -66652295 - MIR SINE MIR -17 245 35 192 40 0 0 chr3 151384876 151384901 -66652257 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 507 213 0 0 chr3 151384903 151384997 -66652161 - AluSp/q SINE Alu -30 283 190 611 137 63 0 chr3 151385001 151385096 -66652062 + AluSq/x SINE Alu 6 106 -206 2076 103 3 3 chr3 151385206 151385497 -66651661 - AluSq SINE Alu -22 291 1 346 248 238 0 chr3 151386269 151386374 -66650784 - MIR SINE MIR -80 182 53 213 39 0 0 chr3 151387136 151387162 -66649996 + (CGG)n Simple_repeat Simple_repeat 3 28 0 2194 85 33 7 chr3 151387938 151388243 -66648915 - AluSp SINE Alu 0 313 1 1210 179 54 78 chr3 151388310 151388606 -66648552 + AluJb SINE Alu 23 311 -1 1092 128 13 0 chr3 151388646 151388802 -66648356 - AluSg/x SINE Alu -21 289 132 2031 101 4 7 chr3 151388802 151389080 -66648078 - AluSc SINE Alu -12 297 21 2142 123 0 3 chr3 151389217 151389524 -66647634 + AluSx SINE Alu 1 306 0 2092 114 17 0 chr3 151389535 151389824 -66647334 + AluSx SINE Alu 1 294 -18 194 0 0 37 chr3 151389828 151389855 -66647303 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 422 162 15 0 chr3 151389900 151389968 -66647190 + AluJ/FLAM SINE Alu 2 70 -242 22 56 0 0 chr3 151389968 151390004 -66647154 + AT_rich Low_complexity Low_complexity 1 36 0 2234 99 0 50 chr3 151390053 151390376 -66646782 - AluSc SINE Alu -2 307 1 2223 124 3 0 chr3 151390391 151390698 -66646460 - AluSg SINE Alu -2 308 1 2057 128 3 10 chr3 151390700 151390998 -66646160 - AluSx SINE Alu -16 296 1 513 189 35 53 chr3 151391016 151391185 -66645973 + MLT1C LTR MaLR 113 278 -189 2238 117 3 3 chr3 151391233 151391533 -66645625 + AluSx SINE Alu 1 300 -12 2298 109 0 0 chr3 151391542 151391844 -66645314 + AluSx SINE Alu 1 302 -10 1240 181 40 102 chr3 151392150 151392270 -66644888 + AluJo SINE Alu 5 131 -181 2052 118 30 23 chr3 151392270 151392574 -66644584 - AluSx SINE Alu -6 306 1 2314 93 7 20 chr3 151392574 151392875 -66644283 - AluSx SINE Alu -15 297 1 1240 181 40 102 chr3 151392875 151393078 -66644080 + AluJo SINE Alu 129 309 -3 1795 149 17 10 chr3 151393088 151393376 -66643782 + AluSx SINE Alu 1 290 -22 308 236 69 0 chr3 151393413 151393485 -66643673 + L2 LINE L2 3221 3297 -16 2390 91 3 3 chr3 151393486 151393794 -66643364 - AluSg SINE Alu -2 308 1 933 206 23 11 chr3 151393798 151393953 -66643205 - AluJb SINE Alu -20 292 133 2291 90 20 7 chr3 151393953 151394253 -66642905 - AluY SINE Alu -3 308 5 933 206 23 11 chr3 151394253 151394272 -66642886 - AluJb SINE Alu -179 133 116 315 209 128 23 chr3 151394273 151394359 -66642799 - MIR SINE MIR -76 132 38 497 252 0 28 chr3 151394934 151395041 -66642117 - FLAM_A SINE Alu -37 105 2 588 180 195 16 chr3 151395104 151395232 -66641926 - AluJb SINE Alu -30 282 132 1869 148 3 27 chr3 151395232 151395530 -66641628 - AluSx SINE Alu 0 312 22 826 163 0 41 chr3 151395654 151395801 -66641357 + FLAM_C SINE Alu 3 143 0 186 167 0 0 chr3 151395900 151395936 -66641222 + (CATA)n Simple_repeat Simple_repeat 4 39 0 255 239 120 0 chr3 151395996 151396025 -66641133 + L1MC/D LINE L1 5797 5821 -1987 2274 106 3 3 chr3 151396025 151396326 -66640832 + AluSg SINE Alu 1 301 -9 255 239 120 0 chr3 151396326 151396388 -66640770 + L1MC/D LINE L1 5821 5899 -1909 2265 101 3 0 chr3 151396616 151396904 -66640254 + AluSg SINE Alu 1 289 -21 2255 117 0 0 chr3 151396951 151397249 -66639909 + AluSg SINE Alu 1 298 -12 237 104 104 0 chr3 151397250 151397298 -66639860 + Alu SINE Alu 249 301 0 1877 164 3 13 chr3 151397461 151397773 -66639385 - AluJb SINE Alu -3 309 1 527 80 0 0 chr3 151397776 151397851 -66639307 - AluJb SINE Alu 0 312 238 966 140 0 7 chr3 151397854 151397997 -66639161 - AluJb SINE Alu -170 142 1 1344 173 38 4 chr3 151398873 151399110 -66638048 + AluJb SINE Alu 1 245 -67 2699 70 3 36 chr3 151399113 151399499 -66637659 + MER41A LTR ERV1 2 374 -180 346 248 238 0 chr3 151400214 151400319 -66636839 - MIR SINE MIR -80 182 53 204 40 0 0 chr3 151401085 151401110 -66636048 + (CGG)n Simple_repeat Simple_repeat 1 25 0 2194 85 33 7 chr3 151401886 151402191 -66634967 - AluSp SINE Alu 0 313 1 1210 179 54 78 chr3 151402258 151402554 -66634604 + AluJb SINE Alu 23 311 -1 1162 109 13 0 chr3 151402595 151402751 -66634407 - AluSg/x SINE Alu -21 291 134 2182 104 0 39 chr3 151402751 151403060 -66634098 - AluSc SINE Alu -12 297 1 1868 154 16 52 chr3 151403081 151403118 -66634040 - L1MB4 LINE L1 -10 6170 6133 749 182 0 23 chr3 151403118 151403250 -66633908 - FLAM_C SINE Alu -2 131 3 1868 154 16 52 chr3 151403250 151403594 -66633564 - L1MB4 LINE L1 -47 6133 5803 2036 129 3 14 chr3 151403594 151403888 -66633270 + AluSx SINE Alu 1 291 -21 2570 77 0 0 chr3 151403925 151404238 -66632920 + AluSq SINE Alu 1 313 0 4416 181 66 8 chr3 151404238 151404611 -66632547 + L1MC3 LINE L1 6453 6803 -982 240 86 0 0 chr3 151404611 151404646 -66632512 + (CA)n Simple_repeat Simple_repeat 2 36 0 4416 181 66 8 chr3 151404646 151405237 -66631921 + L1MC3 LINE L1 6803 7473 -312 1816 71 4 9 chr3 151405239 151405465 -66631693 + AluY SINE Alu 1 225 -86 865 227 45 20 chr3 151405577 151405824 -66631334 - AluSg SINE Alu -56 254 2 940 239 9 13 chr3 151405859 151406089 -66631069 - AluSq SINE Alu -49 264 36 216 0 0 0 chr3 151406119 151406143 -66631015 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1041 169 0 0 chr3 151406156 151406322 -66630836 + AluJb SINE Alu 140 305 -7 1829 124 28 68 chr3 151406884 151407206 -66629952 - AluJb SINE Alu -3 309 1 1957 143 7 23 chr3 151407236 151407544 -66629614 - AluJb SINE Alu -9 303 1 450 94 0 0 chr3 151407772 151407836 -66629322 + (TTCTCC)n Simple_repeat Simple_repeat 4 67 0 1666 156 82 0 chr3 151407836 151408118 -66629040 - AluSx SINE Alu -7 305 1 1746 89 0 0 chr3 151408329 151408553 -66628605 + AluY SINE Alu 83 306 -5 608 192 32 16 chr3 151409483 151409608 -66627550 + MER5B DNA MER1_type 4 130 -48 240 254 42 14 chr3 151409827 151409898 -66627260 + MIR SINE MIR 118 190 -72 1106 163 105 181 chr3 151409917 151410001 -66627157 + MLT2D LTR ERVL 1 90 -324 2496 79 0 16 chr3 151410001 151410181 -66626977 - AluSq SINE Alu 0 313 139 2364 61 27 14 chr3 151410181 151410478 -66626680 - AluY SINE Alu -10 301 1 2496 79 0 16 chr3 151410478 151410615 -66626543 - AluSq SINE Alu -174 139 1 1106 163 105 181 chr3 151410615 151410674 -66626484 + MLT2D LTR ERVL 90 152 -262 1899 122 18 70 chr3 151410674 151411003 -66626155 - AluSx SINE Alu 0 312 1 1106 163 105 181 chr3 151411003 151411306 -66625852 + MLT2D LTR ERVL 152 414 0 303 276 147 49 chr3 151411548 151411658 -66625500 + MIR3 SINE MIR 6 139 -69 213 39 0 0 chr3 151411658 151411684 -66625474 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 303 276 147 49 chr3 151411684 151411736 -66625422 + MIR3 SINE MIR 139 184 -24 3732 101 31 4 chr3 151412015 151412528 -66624630 - MER1A DNA MER1_type 0 527 1 1140 159 0 0 chr3 151412621 151412791 -66624367 - FRAM SINE Alu -8 168 1 875 287 77 32 chr3 151413557 151413617 -66623541 - MLT1K LTR MaLR 0 588 532 198 0 0 0 chr3 151413617 151413639 -66623519 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 875 287 77 32 chr3 151413639 151413954 -66623204 - MLT1K LTR MaLR -56 532 196 1756 88 0 0 chr3 151413991 151414206 -66622952 + AluSx SINE Alu 1 215 -97 2189 116 7 0 chr3 151414722 151415023 -66622135 + AluSx SINE Alu 1 303 -9 1595 172 48 10 chr3 151415107 151415398 -66621760 - AluJb SINE Alu -10 302 1 1079 168 0 0 chr3 151415522 151415683 -66621475 + FRAM SINE Alu 1 161 -15 419 215 41 50 chr3 151415760 151415881 -66621277 + MLT1L LTR MaLR 149 268 -347 222 37 0 0 chr3 151415938 151415965 -66621193 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1712 162 6 41 chr3 151415979 151416105 -66621053 + AluSx SINE Alu 1 130 -182 276 77 0 0 chr3 151416105 151416144 -66621014 + (CA)n Simple_repeat Simple_repeat 1 39 0 1712 162 6 41 chr3 151416144 151416332 -66620826 + AluSx SINE Alu 130 304 -8 383 286 217 7 chr3 151416643 151416829 -66620329 + MIR SINE MIR 38 261 -1 1731 167 48 10 chr3 151417001 151417294 -66619864 - AluJo SINE Alu -8 304 1 734 229 62 22 chr3 151418912 151419091 -66618067 - MER5A DNA MER1_type 0 189 4 1528 148 53 82 chr3 151419676 151419994 -66617164 - AluJo SINE Alu -3 309 1 880 188 62 0 chr3 151420044 151420220 -66616938 - MER5A DNA MER1_type 0 189 3 2024 137 10 20 chr3 151420823 151421123 -66616035 - AluSx SINE Alu -13 299 3 2191 128 0 0 chr3 151421655 151421951 -66615207 - AluSx SINE Alu -16 296 1 414 250 110 61 chr3 151421951 151422052 -66615106 + MER5B DNA MER1_type 3 116 -62 2600 60 0 0 chr3 151422052 151422354 -66614804 - AluY SINE Alu -9 302 1 414 250 110 61 chr3 151422354 151422416 -66614742 + MER5B DNA MER1_type 116 174 -4 281 289 84 72 chr3 151423092 151423258 -66613900 + MER5A DNA MER1_type 1 168 -21 257 288 33 78 chr3 151423125 151423278 -66613880 - MER5A DNA MER1_type -26 163 18 * 23 0 0 0 chr3 151423289 151423312 -66613846 + AT_rich Low_complexity Low_complexity 1 23 0 360 0 0 0 chr3 151423587 151423627 -66613531 + (TG)n Simple_repeat Simple_repeat 2 41 0 434 293 133 5 chr3 151423989 151424177 -66612981 - MIR SINE MIR -16 246 35 2118 158 0 0 chr3 151424491 151424801 -66612357 + AluSx SINE Alu 1 310 -2 455 223 88 61 chr3 151424924 151425252 -66611906 + L1ME4a LINE L1 5752 6088 -33 348 236 21 86 chr3 151426436 151426576 -66610582 + MIR3 SINE MIR 15 145 -63 240 111 0 0 chr3 151429530 151429566 -66607592 + (A)n Simple_repeat Simple_repeat 1 36 0 243 125 0 0 chr3 151429949 151429989 -66607169 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 281 310 119 5 chr3 151430016 151430203 -66606955 - MIR SINE MIR -10 252 38 22 0 0 0 chr3 151435322 151435344 -66601814 + GC_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr3 151435369 151435395 -66601763 + GC_rich Low_complexity Low_complexity 1 26 0 713 197 206 9 chr3 151435901 151436134 -66601024 - L1ME3 LINE L1 -322 5840 5562 1771 158 70 0 chr3 151436265 151436550 -66600608 - AluJo SINE Alu -7 305 1 716 223 109 0 chr3 151436552 151436727 -66600431 - MIR SINE MIR 0 262 69 184 239 70 42 chr3 151436787 151436858 -66600300 - L3b LINE CR1 -196 1387 1315 386 340 41 10 chr3 151438067 151438264 -66598894 - L1MC4a LINE L1 -1747 6061 5859 639 296 45 12 chr3 151438283 151438526 -66598632 - L1MC4a LINE L1 -2064 5744 5494 1227 139 0 0 chr3 151438532 151438698 -66598460 - AluSc SINE Alu -12 297 132 2317 62 31 7 chr3 151438698 151438988 -66598170 - AluY SINE Alu -14 297 1 468 70 0 0 chr3 151438994 151439065 -66598093 + Alu SINE Alu 242 312 0 610 317 67 17 chr3 151439222 151439578 -66597580 - L1ME3A LINE L1 -220 5950 5577 708 332 26 0 chr3 151439650 151439879 -66597279 + MIR SINE MIR 6 240 -22 2232 219 33 74 chr3 151440054 151440866 -66596292 - L1MC5 LINE L1 -146 7815 7037 218 362 91 27 chr3 151441021 151441242 -66595916 - L2 LINE L2 -2 3270 3036 199 340 13 82 chr3 151441331 151441490 -66595668 - L2 LINE L2 0 3272 3125 195 191 48 0 chr3 151441763 151441805 -66595353 + L2 LINE L2 3005 3048 -265 1344 89 0 0 chr3 151441886 151442055 -66595103 - AluSg/x SINE Alu -14 298 130 337 298 126 26 chr3 151442078 151442229 -66594929 + L2 LINE L2 3104 3269 -3 1652 154 0 35 chr3 151442970 151443256 -66593902 - AluJb SINE Alu -8 304 29 306 0 0 0 chr3 151443283 151443317 -66593841 + (T)n Simple_repeat Simple_repeat 1 34 0 809 302 158 20 chr3 151443472 151444592 -66592566 - L2 LINE L2 0 3272 1999 212 194 208 28 chr3 151444590 151444662 -66592496 + L2 LINE L2 3008 3092 -180 * 728 253 29 6 chr3 151444810 151444980 -66592178 - MIR SINE MIR -55 207 34 574 279 102 9 chr3 151445557 151445783 -66591375 + MIR SINE MIR 3 249 -13 819 236 125 9 chr3 151445852 151446068 -66591090 + MLT1G LTR MaLR 3 243 -347 461 293 92 31 chr3 151446621 151447310 -66589848 - L1MEc LINE L1 -867 1623 978 2148 159 0 0 chr3 151447310 151447619 -66589539 - AluSx SINE Alu -3 309 1 461 293 92 31 chr3 151447619 151447767 -66589391 - L1MEc LINE L1 -1512 978 841 2232 82 14 10 chr3 151447767 151448058 -66589100 - AluY SINE Alu -19 292 1 461 293 92 31 chr3 151448058 151448481 -66588677 - L1MEc LINE L1 -1649 841 242 21 71 0 0 chr3 151448617 151448659 -66588499 + AT_rich Low_complexity Low_complexity 1 42 0 371 375 11 16 chr3 151448713 151448897 -66588261 - MIR SINE MIR -46 216 34 360 242 38 129 chr3 151448979 151449165 -66587993 - L1MC4 LINE L1 -71 7971 7803 519 280 0 24 chr3 151449185 151449353 -66587805 - L1ME2 LINE L1 -34 6130 5967 369 0 0 0 chr3 151449353 151449394 -66587764 + (CA)n Simple_repeat Simple_repeat 2 42 0 2686 46 0 0 chr3 151449409 151449711 -66587447 + AluY SINE Alu 2 303 -8 327 269 25 50 chr3 151449845 151449964 -66587194 + L1ME4a LINE L1 5957 6072 -49 2420 110 0 0 chr3 151450110 151450419 -66586739 + AluSx SINE Alu 1 309 -3 1654 170 35 10 chr3 151450516 151450805 -66586353 + AluJb SINE Alu 1 296 -16 330 98 0 0 chr3 151450910 151450961 -66586197 + Alu SINE Alu 246 296 -6 30 0 0 0 chr3 151451082 151451112 -66586046 + AT_rich Low_complexity Low_complexity 1 30 0 1510 101 0 97 chr3 151451186 151451290 -66585868 - AluSc SINE Alu -94 215 145 2246 127 0 0 chr3 151451290 151451597 -66585561 - AluY SINE Alu -4 307 1 1510 101 0 97 chr3 151451597 151451730 -66585428 - AluSc SINE Alu -164 145 1 1867 141 0 52 chr3 151451741 151451897 -66585261 - AluSx SINE Alu -23 289 126 2050 90 0 108 chr3 151451897 151452229 -66584929 - AluSg SINE Alu -14 296 1 1867 141 0 52 chr3 151452229 151452272 -66584886 - AluSx SINE Alu -183 129 4 670 167 0 0 chr3 151452272 151452374 -66584784 - AluSq/x SINE Alu -208 105 4 549 330 65 8 chr3 151452394 151452806 -66584352 - L1ME2 LINE L1 -265 5856 5415 2258 105 3 29 chr3 151452806 151452979 -66584179 - AluSx SINE Alu -5 307 144 2355 84 3 0 chr3 151452979 151453275 -66583883 - AluSp SINE Alu -11 302 6 2258 105 3 29 chr3 151453275 151453416 -66583742 - AluSx SINE Alu -168 144 1 549 330 65 8 chr3 151453416 151453484 -66583674 - L1ME2 LINE L1 -706 5415 5352 2338 125 0 0 chr3 151453537 151453849 -66583309 - AluSx SINE Alu 0 312 1 2173 113 3 0 chr3 151453937 151454228 -66582930 - AluSp SINE Alu -21 292 1 1184 181 31 22 chr3 151454239 151454256 -66582902 - AluJo SINE Alu 0 312 297 2482 70 6 19 chr3 151454256 151454570 -66582588 - AluY SINE Alu -1 310 1 1184 181 31 22 chr3 151454570 151454778 -66582380 - AluJo SINE Alu -15 297 85 494 298 66 35 chr3 151454786 151455014 -66582144 - L1ME2 LINE L1 -1276 4870 4636 2384 92 0 3 chr3 151455071 151455376 -66581782 + AluSc SINE Alu 1 304 -5 999 310 50 17 chr3 151455547 151455966 -66581192 + LTR16A LTR ERVL 16 448 -2 2196 112 0 17 chr3 151456066 151456255 -66580903 - AluSq SINE Alu 0 322 139 2174 116 3 3 chr3 151456255 151456556 -66580602 - AluSx SINE Alu -11 301 1 2196 112 0 17 chr3 151456556 151456693 -66580465 - AluSq SINE Alu -183 139 1 1281 147 9 43 chr3 151456719 151456950 -66580208 - AluJo SINE Alu -5 307 85 41 36 0 0 chr3 151457002 151457057 -66580101 + AT_rich Low_complexity Low_complexity 1 55 0 1802 87 4 0 chr3 151457057 151457287 -66579871 - AluSc SINE Alu -8 301 71 * 2287 105 3 3 chr3 151457285 151457579 -66579579 - AluSg SINE Alu -16 294 1 946 202 71 5 chr3 151457583 151457781 -66579377 - AluJo SINE Alu -95 217 7 26 0 0 0 chr3 151458257 151458283 -66578875 + AT_rich Low_complexity Low_complexity 1 26 0 1817 166 7 3 chr3 151458560 151458844 -66578314 + AluJb SINE Alu 1 285 -27 186 43 0 0 chr3 151459365 151459388 -66577770 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 394 39 65 0 chr3 151459389 151459466 -66577692 + (CCTTG)n Simple_repeat Simple_repeat 3 84 0 2027 115 14 0 chr3 151459479 151459924 -66577234 - AluSx SINE Alu 0 449 1 3902 122 12 72 chr3 151460187 151460597 -66576561 + L1MB2 LINE L1 5483 5916 -255 2279 100 0 38 chr3 151460597 151460917 -66576241 + AluSg SINE Alu 1 308 -2 3902 122 12 72 chr3 151460917 151461119 -66576039 + L1MB2 LINE L1 5916 6048 -123 1958 141 17 3 chr3 151461119 151461409 -66575749 + AluJb SINE Alu 1 294 -18 3902 122 12 72 chr3 151461409 151461522 -66575636 + L1MB2 LINE L1 6048 6166 -5 2657 68 0 0 chr3 151461524 151461835 -66575323 + AluY SINE Alu 1 311 0 408 250 105 23 chr3 151461905 151462077 -66575081 + L1MEd LINE L1 1026 1211 -4908 330 285 81 8 chr3 151462145 151462268 -66574890 + L1MEd LINE L1 1264 1395 -4915 847 98 115 8 chr3 151462274 151462396 -66574762 + AluSq/x SINE Alu 1 135 -177 2176 122 3 3 chr3 151462396 151462700 -66574458 + AluSq SINE Alu 1 304 -9 466 177 94 10 chr3 151462700 151462796 -66574362 + L1MC1 LINE L1 6221 6324 -9 2380 90 0 28 chr3 151462796 151463118 -66574040 + AluSq SINE Alu 1 313 0 1925 146 31 0 chr3 151463340 151463627 -66573531 - AluSx SINE Alu -14 298 3 1582 165 9 54 chr3 151464043 151464214 -66572944 - AluJo SINE Alu 0 302 150 1495 148 55 35 chr3 151464214 151464368 -66572790 - AluJb SINE Alu -16 296 132 2033 128 66 0 chr3 151464368 151464657 -66572501 - AluSx SINE Alu -4 308 1 1495 148 55 35 chr3 151464657 151464792 -66572366 - AluJb SINE Alu -180 132 1 1582 165 9 54 chr3 151464792 151464936 -66572222 - AluJo SINE Alu -152 150 1 1261 243 42 55 chr3 151465049 151465135 -66572023 + L2 LINE L2 2236 2322 -992 2128 127 0 3 chr3 151465135 151465442 -66571716 + AluSx SINE Alu 1 306 -6 2256 111 3 0 chr3 151465444 151465742 -66571416 + AluSp SINE Alu 1 299 -14 2273 103 0 0 chr3 151465742 151466023 -66571135 + AluSx SINE Alu 1 284 -28 360 0 0 0 chr3 151466023 151466063 -66571095 + (CA)n Simple_repeat Simple_repeat 1 40 0 1261 243 42 55 chr3 151466072 151466384 -66570774 + L2 LINE L2 2321 2633 -681 182 214 0 0 chr3 151466388 151466430 -66570728 + L2 LINE L2 3272 3313 0 2388 95 3 0 chr3 151466809 151467105 -66570053 + AluSx SINE Alu 1 297 -15 392 290 56 124 chr3 151467835 151468160 -66568998 + L2 LINE L2 2368 2625 -688 1989 160 7 0 chr3 151468160 151468467 -66568691 - AluJb SINE Alu -2 310 2 392 290 56 124 chr3 151468467 151468820 -66568338 + L2 LINE L2 2625 3000 -313 728 184 28 0 chr3 151468836 151468977 -66568181 - MLT1G1 LTR MaLR -3 592 448 1752 130 50 60 chr3 151469124 151469425 -66567733 + AluSg SINE Alu 1 298 -12 372 289 132 29 chr3 151469428 151469632 -66567526 - MLT1G1 LTR MaLR -370 225 1 203 379 63 21 chr3 151469632 151469822 -66567336 + L2 LINE L2 3027 3224 -89 577 267 34 23 chr3 151470099 151470275 -66566883 + MLT1J2 LTR MaLR 1 178 -272 1641 101 4 9 chr3 151470286 151470514 -66566644 - AluSq SINE Alu -17 296 70 2377 83 0 26 chr3 151470545 151470857 -66566301 + AluSq SINE Alu 1 304 -9 331 293 35 41 chr3 151470985 151471196 -66565962 - L1MC5 LINE L1 -475 7493 7422 1853 146 62 0 chr3 151471196 151471470 -66565688 + AluSg SINE Alu 1 291 -19 331 293 35 41 chr3 151471470 151471625 -66565533 - L1MC5 LINE L1 -546 7422 7268 180 0 0 0 chr3 151471666 151471686 -66565472 + (TA)n Simple_repeat Simple_repeat 2 21 0 1923 128 0 92 chr3 151471686 151472013 -66565145 - AluJb SINE Alu -15 297 1 524 169 36 81 chr3 151472643 151472659 -66564499 - L1MC3 LINE L1 -1 7769 7754 2228 119 3 0 chr3 151472659 151472954 -66564204 + AluSx SINE Alu 1 296 -16 524 169 36 81 chr3 151472954 151473012 -66564146 - L1MC3 LINE L1 -16 7754 7695 2286 119 3 3 chr3 151473012 151473322 -66563836 + AluSx SINE Alu 1 310 -2 524 169 36 81 chr3 151473322 151473464 -66563694 - L1MC3 LINE L1 -75 7695 6137 820 241 0 18 chr3 151473464 151473634 -66563524 - FRAM SINE Alu -9 167 1 2207 109 7 0 chr3 151473651 151473944 -66563214 - AluSg SINE Alu -15 295 1 1175 170 0 40 chr3 151473944 151474191 -66562967 - L1MC3 LINE L1 -195 7590 7354 1158 114 0 36 chr3 151474192 151474359 -66562799 - AluSq SINE Alu -18 295 135 2057 81 92 4 chr3 151474359 151474632 -66562526 - AluSx SINE Alu -15 297 1 1201 116 143 0 chr3 151474635 151474859 -66562299 - L1MC3 LINE L1 -422 7363 7108 659 223 11 65 chr3 151474861 151474947 -66562211 - MLT1C LTR MaLR 0 467 395 2151 156 12 18 chr3 151474947 151475286 -66561872 - MER1B DNA MER1_type 0 337 1 659 223 11 65 chr3 151475286 151475373 -66561785 - MLT1C LTR MaLR -72 395 304 1806 198 16 21 chr3 151475373 151475751 -66561407 - MSTD LTR MaLR 0 396 21 811 219 108 32 chr3 151475755 151476034 -66561124 - MLT1C LTR MaLR -167 300 1 2620 56 0 3 chr3 151476059 151476364 -66560794 - AluY SINE Alu -7 304 1 1861 144 30 13 chr3 151476367 151476666 -66560492 - AluJb SINE Alu -6 306 3 332 152 114 57 chr3 151476667 151476772 -66560386 - L1MC3 LINE L1 -687 7098 6988 * 997 246 91 4 chr3 151476749 151477013 -66560145 - L1M4 LINE L1 -1849 4297 4011 250 200 0 0 chr3 151477014 151477069 -66560089 - L1MCa LINE L1 -3947 2479 2425 320 161 148 0 chr3 151477074 151477155 -66560003 - L1MC2 LINE L1 -1 6343 6251 300 104 0 0 chr3 151477139 151477187 -66559971 - L1M4 LINE L1 -913 5233 5186 * 233 146 0 0 chr3 151477179 151477220 -66559938 - L1MCa LINE L1 -3977 2449 2409 * 397 119 208 0 chr3 151477281 151477382 -66559776 - L1MCa LINE L1 -4023 2403 2282 1860 157 3 17 chr3 151477394 151477557 -66559601 - AluJb SINE Alu -16 296 137 2317 82 3 0 chr3 151477557 151477848 -66559310 - AluSp SINE Alu -21 292 1 1860 157 3 17 chr3 151477848 151477984 -66559174 - AluJb SINE Alu -175 137 1 991 223 19 5 chr3 151478030 151478245 -66558913 + MER20 DNA MER1_type 2 219 0 2126 126 3 7 chr3 151478319 151478620 -66558538 - AluSx SINE Alu -12 300 1 329 230 110 10 chr3 151478654 151478754 -66558404 - MLT1I LTR MaLR -299 110 1 1057 263 140 20 chr3 151478822 151479229 -66557929 - LTR16B LTR ERVL 0 464 9 356 314 36 0 chr3 151479332 151479472 -66557686 - HERVL LTR ERVL -307 5347 5203 1483 111 0 10 chr3 151479541 151479749 -66557409 + AluJo SINE Alu 6 211 -101 436 301 64 0 chr3 151479872 151480028 -66557130 - HERVL LTR ERVL -729 4925 4760 268 188 0 0 chr3 151480328 151480376 -66556782 - L1MC2 LINE L1 -1877 5931 5884 2303 113 0 3 chr3 151480451 151480751 -66556407 - AluSx SINE Alu -13 299 1 938 281 63 14 chr3 151480833 151481182 -66555976 - L1MC2 LINE L1 -2022 5786 5421 262 188 14 29 chr3 151481184 151481253 -66555905 - MER116 DNA Mariner 0 80 13 32 0 0 0 chr3 151481308 151481340 -66555818 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chr3 151481754 151481776 -66555382 + (TCCTG)n Simple_repeat Simple_repeat 1 22 0 518 299 70 0 chr3 151482012 151482213 -66554945 - L1ME LINE L1 -304 5817 5603 2104 137 0 7 chr3 151482547 151482854 -66554304 + AluSx SINE Alu 8 312 0 640 278 120 21 chr3 151482898 151483132 -66554026 - MIR SINE MIR 0 262 6 2641 61 0 0 chr3 151483285 151483596 -66553562 - AluY SINE Alu 0 311 1 2384 94 0 0 chr3 151483605 151483903 -66553255 - AluSg SINE Alu -11 299 2 186 103 0 0 chr3 151484003 151484032 -66553126 + (TGGA)n Simple_repeat Simple_repeat 2 30 0 596 268 106 53 chr3 151484159 151484461 -66552697 + L2 LINE L2 2988 3305 -8 23 86 0 0 chr3 151484660 151484718 -66552440 + GC_rich Low_complexity Low_complexity 1 58 0 864 266 55 4 chr3 151485490 151485598 -66551560 + AluJb SINE Alu 1 102 -200 189 0 0 0 chr3 151485598 151485619 -66551539 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 864 266 55 4 chr3 151485619 151485781 -66551377 + AluJb SINE Alu 102 285 -17 207 192 0 39 chr3 151487420 151487472 -66549686 + (CGGGG)n Simple_repeat Simple_repeat 1 50 0 210 171 0 0 chr3 151488028 151488069 -66549089 + CT-rich Low_complexity Low_complexity 3 43 0 321 89 0 0 chr3 151489265 151489310 -66547848 + (TG)n Simple_repeat Simple_repeat 2 46 0 327 49 0 0 chr3 151492343 151492384 -66544774 + (TG)n Simple_repeat Simple_repeat 1 41 0 1774 158 0 67 chr3 151492405 151492721 -66544437 - AluJb SINE Alu -17 295 1 2054 105 6 19 chr3 151492730 151492911 -66544247 - L1PB2 LINE L1 -1 6150 5973 2102 139 20 0 chr3 151492911 151493206 -66543952 - AluSx SINE Alu -11 301 1 2054 105 6 19 chr3 151493206 151493339 -66543819 - L1PB2 LINE L1 -178 5973 5840 1337 172 8 52 chr3 151493794 151493928 -66543230 - AluJo SINE Alu -57 255 137 2484 80 0 0 chr3 151493928 151494227 -66542931 - AluSq SINE Alu -12 301 3 1337 172 8 52 chr3 151494227 151494359 -66542799 - AluJo SINE Alu -175 137 1 2180 132 0 0 chr3 151494601 151494897 -66542261 - AluSq SINE Alu -17 296 1 182 315 37 0 chr3 151495104 151495158 -66542000 - L2 LINE L2 -80 3233 3178 186 336 19 29 chr3 151495184 151495288 -66541870 - L3 LINE CR1 -2 1575 1473 571 137 39 0 chr3 151495541 151495643 -66541515 - AluSg/x SINE Alu 0 309 204 2576 48 0 7 chr3 151495660 151495969 -66541189 - AluY SINE Alu -4 307 1 224 227 0 0 chr3 151496252 151496296 -66540862 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 2220 87 0 14 chr3 151496340 151496615 -66540543 - AluSx SINE Alu -41 271 1 1123 203 17 17 chr3 151496615 151496905 -66540253 - L1ME2 LINE L1 -187 5977 5688 186 304 164 9 chr3 151496954 151497168 -66539990 - L2 LINE L2 -1460 1854 1608 1580 186 57 11 chr3 151497814 151498094 -66539064 - AluJo SINE Alu -19 293 1 463 234 14 48 chr3 151498231 151498376 -66538782 - L1ME3 LINE L1 -1 6163 6024 1299 58 0 0 chr3 151498376 151498531 -66538627 - AluY SINE Alu -17 294 140 849 219 22 31 chr3 151498541 151498769 -66538389 - L1ME3 LINE L1 -159 6005 5780 385 256 0 0 chr3 151498987 151499069 -66538089 - L1ME3 LINE L1 -2168 5640 5559 303 136 61 45 chr3 151499093 151499159 -66537999 - L1MC5 LINE L1 -33 7928 7862 312 70 0 0 chr3 151499534 151499577 -66537581 + (TG)n Simple_repeat Simple_repeat 1 43 0 575 297 218 21 chr3 151499581 151500122 -66537036 + L2 LINE L2 2664 3313 0 442 252 185 0 chr3 151500138 151500273 -66536885 + MIR SINE MIR 20 179 -83 1844 161 3 35 chr3 151501215 151501532 -66535626 - AluJo SINE Alu -5 307 1 233 300 14 0 chr3 151501534 151501604 -66535554 + Charlie8 DNA MER1_type 1357 1427 -990 225 270 101 101 chr3 151501973 151502132 -66535026 - MIR SINE MIR -14 248 90 1752 190 0 29 chr3 151502578 151502894 -66534264 - AluJo SINE Alu -5 307 1 384 260 32 65 chr3 151503122 151503276 -66533882 - MIR SINE MIR -20 242 94 423 0 0 0 chr3 151504521 151504568 -66532590 + (CA)n Simple_repeat Simple_repeat 1 47 0 621 219 59 18 chr3 151504725 151504894 -66532264 - MIR SINE MIR -60 202 27 1002 184 6 0 chr3 151504953 151505116 -66532042 - AluJb SINE Alu -20 292 129 180 0 0 0 chr3 151505543 151505563 -66531595 + (CTG)n Simple_repeat Simple_repeat 3 22 0 408 40 0 0 chr3 151505563 151505613 -66531545 + (TG)n Simple_repeat Simple_repeat 1 50 0 3794 117 7 0 chr3 151507004 151507545 -66529613 + L1PA13 LINE L1 5615 6159 -4 22 0 0 0 chr3 151507546 151507568 -66529590 + AT_rich Low_complexity Low_complexity 1 22 0 2293 111 0 0 chr3 151507805 151508111 -66529047 - AluY SINE Alu -5 306 1 206 336 107 0 chr3 151508117 151508239 -66528919 - MIR SINE MIR -116 146 12 483 190 20 133 chr3 151508452 151508647 -66528511 + MER5B DNA MER1_type 5 177 -1 182 277 31 15 chr3 151508808 151508873 -66528285 - MIR SINE MIR -141 121 56 498 304 52 52 chr3 151508930 151509219 -66527939 + L2 LINE L2 2112 2400 -914 318 282 234 0 chr3 151509418 151509542 -66527616 + L2 LINE L2 3118 3270 -2 657 214 15 70 chr3 151510542 151510743 -66526415 + MIR SINE MIR 67 256 -6 594 306 20 12 chr3 151511702 151511917 -66525241 - MIR SINE MIR -12 250 35 485 287 92 5 chr3 151511941 151512136 -66525022 + MIR SINE MIR 36 247 -15 216 273 129 30 chr3 151512339 151512471 -66524687 + MIR3 SINE MIR 3 147 -61 332 233 83 25 chr3 151512762 151512882 -66524276 + MIR SINE MIR 20 146 -116 192 273 111 30 chr3 151512929 151513028 -66524130 + L2 LINE L2 3154 3260 -12 278 365 24 18 chr3 151513104 151513274 -66523884 - MER5A DNA MER1_type -2 187 17 221 163 0 0 chr3 151513769 151513812 -66523346 + GA-rich Low_complexity Low_complexity 1 43 0 25 51 0 0 chr3 151514182 151514221 -66522937 + AT_rich Low_complexity Low_complexity 1 39 0 239 226 16 0 chr3 151514277 151514339 -66522819 + MIR SINE MIR 161 223 -39 190 169 108 62 chr3 151515879 151515944 -66521214 - L2 LINE L2 0 3313 3246 220 246 88 0 chr3 151516598 151516712 -66520446 - L2 LINE L2 -164 3108 2985 355 299 0 0 chr3 151516813 151516920 -66520238 - MIR3 SINE MIR -23 185 79 980 164 261 40 chr3 151517247 151517435 -66519723 - MLT1A1 LTR MaLR 0 365 220 183 42 0 0 chr3 151517435 151517459 -66519699 + (TTAAA)n Simple_repeat Simple_repeat 5 28 0 2218 65 11 0 chr3 151517459 151517721 -66519437 - AluY SINE Alu -27 284 20 980 164 261 40 chr3 151517721 151517830 -66519328 - MLT1A1 LTR MaLR -144 221 1 231 212 32 32 chr3 151517838 151517929 -66519229 + MIR SINE MIR 64 155 -62 2401 84 3 0 chr3 151518283 151518580 -66518578 - AluSx SINE Alu -14 298 1 1155 52 0 0 chr3 151519404 151519540 -66517618 - AluY SINE Alu -19 292 157 387 80 0 0 chr3 151519540 151519590 -66517568 - Alu SINE Alu -249 51 2 4938 151 35 2 chr3 151519609 151520462 -66516696 - L1MB7 LINE L1 -3 6181 5301 1520 199 17 56 chr3 151521348 151521704 -66515454 + MLT1A2 LTR MaLR 3 344 -30 255 191 0 0 chr3 151521786 151521849 -66515309 + (CA)n Simple_repeat Simple_repeat 1 63 0 268 180 0 49 chr3 151522122 151522183 -66514975 + MER113 DNA MER1_type? 464 521 0 960 161 0 65 chr3 151522236 151522404 -66514754 + AluJo SINE Alu 3 159 -153 1246 148 9 0 chr3 151522404 151522621 -66514537 - L1 LINE L1 -789 5357 5139 1546 257 24 31 chr3 151523558 151523887 -66513271 - L1ME LINE L1 -640 5522 5192 1615 143 24 68 chr3 151523887 151524180 -66512978 - AluJb SINE Alu -32 280 1 1546 257 24 31 chr3 151524180 151524686 -66512472 - L1ME LINE L1 -970 5192 4696 2184 206 43 32 chr3 151524753 151524988 -66512170 - L1ME2 LINE L1 -1 6232 5998 764 249 54 57 chr3 151524988 151525322 -66511836 - L1MA6 LINE L1 -373 5927 5595 * 5423 220 39 30 chr3 151525290 151526956 -66510202 - L1ME2 LINE L1 -716 5519 3844 1560 225 71 8 chr3 151526980 151527456 -66509702 - L1ME2 LINE L1 -3313 2902 2397 440 232 21 0 chr3 151527492 151527587 -66509571 - L1ME3A LINE L1 -39 6131 6035 1648 254 58 19 chr3 151527651 151528084 -66509074 - L1MD2 LINE L1 -22 6337 5888 * 1967 263 95 36 chr3 151528083 151528888 -66508270 - L1ME2 LINE L1 -3961 2294 1538 2353 75 3 39 chr3 151528888 151529196 -66507962 - AluSp SINE Alu -16 297 1 1967 263 95 36 chr3 151529196 151529209 -66507949 - L1ME2 LINE L1 -4717 1538 1527 2459 45 3 3 chr3 151529209 151529519 -66507639 - AluY SINE Alu 0 310 1 1967 263 95 36 chr3 151529519 151529591 -66507567 - L1ME2 LINE L1 -4728 1527 1461 366 85 0 0 chr3 151529591 151529650 -66507508 + (TG)n Simple_repeat Simple_repeat 2 60 0 1967 263 95 36 chr3 151529650 151530110 -66507048 - L1ME2 LINE L1 -4794 1461 862 3574 131 25 15 chr3 151530111 151530715 -66506443 - L1MA7 LINE L1 0 6291 5682 399 145 0 0 chr3 151530716 151530785 -66506373 + L1 LINE L1 4922 4990 -1156 2165 149 0 0 chr3 151530786 151531095 -66506063 + AluSx SINE Alu 1 309 -3 24 32 0 0 chr3 151531115 151531146 -66506012 + AT_rich Low_complexity Low_complexity 1 31 0 1509 164 24 0 chr3 151531149 151531442 -66505716 + L1 LINE L1 4980 5279 -867 681 197 67 39 chr3 151531579 151531787 -66505371 - L1M4 LINE L1 -847 5299 5086 1668 185 19 22 chr3 151531790 151532103 -66505055 + AluJo SINE Alu 1 312 0 1428 160 91 19 chr3 151532112 151532406 -66504752 + AluJo SINE Alu 1 313 0 208 147 0 0 chr3 151532562 151532596 -66504562 + (TA)n Simple_repeat Simple_repeat 1 34 0 2378 104 0 0 chr3 151533021 151533330 -66503828 - AluSx SINE Alu -3 309 1 228 111 0 0 chr3 151533846 151533882 -66503276 + (CCAA)n Simple_repeat Simple_repeat 2 37 0 7245 115 18 11 chr3 151535519 151536782 -66500376 - L1MA3 LINE L1 -2 7722 6446 2273 79 7 26 chr3 151536782 151537086 -66500072 - AluSq SINE Alu -15 298 1 7245 115 18 11 chr3 151537086 151537214 -66499944 - L1MA3 LINE L1 -1278 6446 6320 1359 103 0 0 chr3 151537209 151537394 -66499764 + L1MA2 LINE L1 5660 5844 -460 * 400 221 0 0 chr3 151537416 151537484 -66499674 + AluS SINE Alu 1 68 -235 25 0 0 0 chr3 151537486 151537511 -66499647 + AT_rich Low_complexity Low_complexity 1 25 0 2013 130 0 43 chr3 151537563 151537887 -66499271 - AluSx SINE Alu -2 310 1 9093 151 10 15 chr3 151537891 151539509 -66497649 - L1MA3 LINE L1 -1263 6302 4691 2235 107 0 7 chr3 151539509 151539808 -66497350 - AluY SINE Alu -9 302 6 9093 151 10 15 chr3 151539808 151539840 -66497318 - L1MA3 LINE L1 -2874 4691 4660 1794 91 41 63 chr3 151539940 151539986 -66497172 - L1MA3 LINE L1 -4583 2982 2937 2296 103 36 0 chr3 151539986 151540287 -66496871 - AluSx SINE Alu 0 312 1 1794 91 41 63 chr3 151540287 151540494 -66496664 - L1MA3 LINE L1 -4628 2937 2727 312 102 0 0 chr3 151540494 151540543 -66496615 + (CA)n Simple_repeat Simple_repeat 2 50 0 830 196 0 44 chr3 151540547 151540705 -66496453 - FRAM SINE Alu -15 151 1 1794 91 41 63 chr3 151540705 151540763 -66496395 - L1MA3 LINE L1 -4841 2724 2672 2008 152 50 17 chr3 151541031 151541433 -66495725 - L1MA7 LINE L1 0 6291 5877 333 312 83 23 chr3 151541455 151541696 -66495462 - L1MEc LINE L1 -917 1659 1349 277 318 0 0 chr3 151541756 151541841 -66495317 + L2 LINE L2 48 132 -3182 2714 36 0 0 chr3 151542207 151542516 -66494642 - AluY SINE Alu -1 310 2 378 313 36 36 chr3 151542528 151542806 -66494352 - L1MEc LINE L1 -5840 365 88 180 125 0 0 chr3 151543731 151543763 -66493395 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 920 279 56 163 chr3 151543823 151544142 -66493016 + AluJb SINE Alu 1 285 -17 312 27 0 0 chr3 151544159 151544196 -66492962 + (CA)n Simple_repeat Simple_repeat 1 37 0 1903 146 0 26 chr3 151546928 151547236 -66489922 + AluJb SINE Alu 1 300 -12 45 37 0 25 chr3 151547269 151547327 -66489831 + AT_rich Low_complexity Low_complexity 1 58 -21 2701 42 0 7 chr3 151547327 151547637 -66489521 - AluY SINE Alu -3 308 1 45 37 0 25 chr3 151547637 151547659 -66489499 + AT_rich Low_complexity Low_complexity 58 79 0 1877 148 10 10 chr3 151547687 151547985 -66489173 - AluJb SINE Alu -14 298 1 2003 118 14 0 chr3 151547990 151548278 -66488880 - AluSx SINE Alu -20 292 1 2515 84 0 0 chr3 151548283 151548594 -66488564 - AluSq SINE Alu -2 311 1 21 36 0 0 chr3 151548659 151548687 -66488471 + AT_rich Low_complexity Low_complexity 1 28 0 1165 101 4 4 chr3 151548687 151548915 -66488243 - L1MA1 LINE L1 -4 6298 6019 340 224 110 86 chr3 151549102 151549269 -66487889 - L1ME LINE L1 -587 5575 5398 2770 60 0 6 chr3 151549269 151549618 -66487540 - L1PA5 LINE L1 0 6154 5808 340 224 110 86 chr3 151549618 151549705 -66487453 - L1ME LINE L1 -764 5398 5315 4266 273 126 54 chr3 151549769 151551321 -66485837 + L2 LINE L2 601 2454 -859 238 253 13 0 chr3 151551321 151551400 -66485758 - MER116 DNA Mariner 0 80 1 4266 273 126 54 chr3 151551400 151552182 -66484976 + L2 LINE L2 2454 3178 -135 11473 48 4 38 chr3 151552197 151556433 -66480725 - L1PA5 LINE L1 0 6154 2083 1435 198 35 3 chr3 151556422 151556765 -66480393 - L1M4 LINE L1 -784 5362 5009 * 3141 200 60 17 chr3 151556757 151557576 -66479582 - L1ME LINE L1 -907 5239 4386 1511 97 73 0 chr3 151557643 151557849 -66479309 - MER30 DNA MER1_type -2 228 8 3010 221 55 60 chr3 151557849 151558597 -66478561 - MER89-int LTR ERV1 -2557 4244 3499 1821 174 3 19 chr3 151558597 151558907 -66478251 - AluJo SINE Alu -7 305 1 3010 221 55 60 chr3 151558907 151559014 -66478144 - MER89-int LTR ERV1 -3302 3499 3393 1676 178 3 13 chr3 151559014 151559329 -66477829 + AluSq SINE Alu 1 312 -1 1089 164 6 0 chr3 151559331 151559502 -66477656 + AluSg/x SINE Alu 126 297 -13 972 192 0 53 chr3 151559506 151559714 -66477444 - MER89-int LTR ERV1 -3405 3396 3200 3246 167 50 16 chr3 151559996 151560602 -66476556 - L1MC2 LINE L1 0 6344 5719 2801 214 38 44 chr3 151560605 151561260 -66475898 - MER89-int LTR ERV1 -3605 3196 2546 531 296 13 6 chr3 151561454 151561613 -66475545 - MER89-int LTR ERV1 -4370 277 118 2194 228 19 20 chr3 151561619 151562106 -66475052 - MER89-int LTR ERV1 -4243 2558 2073 * 4307 230 57 65 chr3 151562104 151563523 -66473635 - MER89-int LTR ERV1 -5249 1552 146 2025 172 10 47 chr3 151563572 151564049 -66473109 - MER89 LTR ERV1 -3 556 1 5219 161 20 24 chr3 151564440 151566287 -66470871 + L1MA4 LINE L1 4471 6300 0 2455 87 0 6 chr3 151566392 151566704 -66470454 - AluY SINE Alu -1 310 1 282 328 8 0 chr3 151566721 151566849 -66470309 - L1M4 LINE L1 -3062 3084 2956 360 322 69 17 chr3 151566885 151567118 -66470040 - L1M4 LINE L1 -3319 2827 2583 2794 143 44 12 chr3 151568050 151568552 -66468606 - L1MC2 LINE L1 -10 6334 5817 352 231 0 0 chr3 151568712 151568777 -66468381 + AluJ/FRAM SINE Alu 226 290 -12 2709 212 27 26 chr3 151571192 151571856 -66465302 - L1M4 LINE L1 -1198 4948 4284 2686 197 41 91 chr3 151571881 151572688 -66464470 - L1MCb LINE L1 -5265 780 14 1239 199 57 24 chr3 151572721 151573017 -66464141 - L1ME3A LINE L1 -67 6103 5798 3124 146 35 18 chr3 151573019 151573534 -66463624 + Tigger7 DNA MER2_type 2 525 -208 332 185 0 0 chr3 151573528 151573582 -66463576 + Tigger7 DNA MER2_type 2396 2449 -38 * 1490 261 17 27 chr3 151573613 151574027 -66463131 - L1ME3A LINE L1 -385 5785 5376 582 124 0 34 chr3 151574051 151574140 -66463018 + FLAM_A SINE Alu 39 124 -18 1590 272 40 20 chr3 151574186 151574888 -66462270 - L1ME3A LINE L1 -841 5305 4590 35 24 0 0 chr3 151575038 151575080 -66462078 + AT_rich Low_complexity Low_complexity 1 42 0 388 286 74 48 chr3 151575080 151575458 -66461700 - HAL1b LINE L1 -900 448 61 249 219 31 16 chr3 151576386 151576450 -66460708 - L1M3 LINE L1 -627 5553 5489 6287 166 27 104 chr3 151576493 151578006 -66459152 - MER52A LTR ERV1 -352 1403 8 228 254 109 52 chr3 151578190 151578383 -66458775 - L1M3 LINE L1 -2398 3748 3545 284 282 139 16 chr3 151578487 151578849 -66458309 - L1M3 LINE L1 -3124 3022 2604 1045 186 15 29 chr3 151578855 151579059 -66458099 + MER3 DNA MER1_type 7 207 -2 404 285 55 47 chr3 151579133 151579407 -66457751 - HAL1 LINE L1 -1120 1387 1112 2286 213 18 41 chr3 151579949 151580456 -66456702 - LTR40a LTR ERVL 0 519 25 453 169 36 12 chr3 151580910 151580993 -66456165 + L2 LINE L2 3187 3271 -42 5013 173 34 9 chr3 151581018 151582086 -66455072 - L1MB7 LINE L1 0 6253 5161 270 340 29 0 chr3 151582856 151582959 -66454199 - MIR SINE MIR -20 242 137 411 296 28 34 chr3 151583389 151583568 -66453590 - L2 LINE L2 -29 3284 3107 286 297 181 19 chr3 151583700 151584020 -66453138 - L2 LINE L2 -457 2857 2486 349 283 30 0 chr3 151585242 151585341 -66451817 + MIR3 SINE MIR 58 159 -49 2062 194 36 0 chr3 151585836 151586275 -66450883 - L1MB7 LINE L1 -1225 4990 4536 1939 252 85 30 chr3 151586381 151587446 -66449712 - L1MB7 LINE L1 -3057 3158 2066 240 259 17 0 chr3 151587949 151588007 -66449151 - L2 LINE L2 -6 3307 3249 484 242 42 8 chr3 151588036 151588156 -66449002 - MIR SINE MIR -60 202 79 253 290 109 22 chr3 151588523 151588661 -66448497 - MIR SINE MIR -20 242 93 227 370 65 0 chr3 151589739 151589831 -66447327 + L2 LINE L2 3142 3239 -33 186 204 45 80 chr3 151591623 151591711 -66445447 + MIR SINE MIR 36 120 -142 374 216 102 0 chr3 151592231 151592361 -66444797 - MIR SINE MIR -33 229 80 258 286 152 11 chr3 151592906 151593061 -66444097 - MIR SINE MIR -61 147 5 225 0 0 0 chr3 151593712 151593737 -66443421 + (T)n Simple_repeat Simple_repeat 1 25 0 306 315 145 0 chr3 151594158 151594335 -66442823 + MIR SINE MIR 30 225 -37 191 213 0 21 chr3 151594698 151594745 -66442413 + L2 LINE L2 3268 3313 0 417 281 31 8 chr3 151594828 151594956 -66442202 - L2 LINE L2 -50 3263 3133 255 240 0 0 chr3 151595930 151595980 -66441178 + MER94 DNA DNA 2 51 -83 1985 145 20 10 chr3 151599585 151599889 -66437269 - AluJb SINE Alu -5 307 1 232 291 145 72 chr3 151600198 151600336 -66436822 - MIR SINE MIR -58 150 41 544 245 49 0 chr3 151601149 151601292 -66435866 + MER117 DNA MER1_type 38 187 -10 483 238 40 94 chr3 151601332 151601534 -66435624 - MIR3 SINE MIR -15 193 3 523 296 0 0 chr3 151602350 151602482 -66434676 - MIR SINE MIR -67 195 64 333 0 0 0 chr3 151602773 151602810 -66434348 + (TG)n Simple_repeat Simple_repeat 2 38 0 972 229 60 28 chr3 151602816 151603100 -66434058 + Tigger3(Golem) DNA MER2_type 1 293 -2736 470 70 106 4 chr3 151603103 151603391 -66433767 + (TA)n Simple_repeat Simple_repeat 1 317 0 522 97 46 23 chr3 151603411 151603586 -66433572 + (TA)n Simple_repeat Simple_repeat 2 180 0 9316 42 1 0 chr3 151603709 151604823 -66432335 - L1P LINE L1 -1014 5132 4018 2514 235 42 45 chr3 151605171 151605821 -66431337 + MER89-int LTR ERV1 2549 3196 -3605 602 149 105 11 chr3 151605823 151606037 -66431121 + L1MC2 LINE L1 5719 5898 -446 412 124 65 0 chr3 151606162 151606331 -66430827 + (TA)n Simple_repeat Simple_repeat 1 180 0 35 0 0 0 chr3 151606331 151606366 -66430792 + AT_rich Low_complexity Low_complexity 1 35 0 547 101 34 28 chr3 151606366 151606544 -66430614 + (TA)n Simple_repeat Simple_repeat 2 180 0 37 0 0 0 chr3 151606544 151606581 -66430577 + AT_rich Low_complexity Low_complexity 1 37 0 473 63 57 50 chr3 151606581 151606740 -66430418 + (TTATA)n Simple_repeat Simple_repeat 5 164 0 62 14 0 0 chr3 151606740 151606809 -66430349 + AT_rich Low_complexity Low_complexity 1 69 0 991 229 46 29 chr3 151606809 151607049 -66430109 - Tigger3(Golem) DNA MER2_type -2785 244 1 189 74 0 0 chr3 151607056 151607083 -66430075 + (CA)n Simple_repeat Simple_repeat 2 28 0 23395 43 13 3 chr3 151607316 151610178 -66426980 + L1P LINE L1 222 3112 -3034 607 72 81 4 chr3 151610290 151610738 -66426420 + (TA)n Simple_repeat Simple_repeat 1 482 0 554 57 92 0 chr3 151610759 151611031 -66426127 + (TA)n Simple_repeat Simple_repeat 1 296 0 1889 115 80 0 chr3 151611032 151611320 -66425838 - Tigger3b DNA MER2_type -574 657 347 2214 98 0 7 chr3 151611339 151611626 -66425532 - AluSg1 SINE Alu -24 285 1 3400 116 49 18 chr3 151611627 151612177 -66424981 + Tigger3b DNA MER2_type 664 1230 -2 294 29 0 0 chr3 151612177 151612212 -66424946 + (TG)n Simple_repeat Simple_repeat 2 36 0 1680 158 49 0 chr3 151612260 151612544 -66424614 - MLT2D LTR ERVL -116 298 1 217 255 0 0 chr3 151614347 151614398 -66422760 - L2 LINE L2 -15 3298 3248 621 299 40 13 chr3 151616291 151616515 -66420643 - MIR SINE MIR -20 242 13 534 170 12 10 chr3 151617895 151618019 -66419139 + L1MA6 LINE L1 5924 6043 -254 432 232 165 63 chr3 151619121 151619358 -66417800 + MIR SINE MIR 1 261 -1 654 232 40 11 chr3 151619369 151619546 -66417612 + L1MC5 LINE L1 7732 7913 -48 186 103 0 0 chr3 151619571 151619600 -66417558 + (TA)n Simple_repeat Simple_repeat 2 30 0 28 29 0 0 chr3 151619688 151619723 -66417435 + AT_rich Low_complexity Low_complexity 1 35 0 331 201 112 56 chr3 151619723 151619902 -66417256 - MER113 DNA MER1_type? -329 192 4 671 271 58 28 chr3 151620004 151620236 -66416922 + MIR SINE MIR 2 250 -12 624 271 57 45 chr3 151620608 151620852 -66416306 - MIR SINE MIR -2 260 14 327 287 116 33 chr3 151621566 151621747 -66415411 - MARNA DNA Mariner -82 504 309 399 41 0 0 chr3 151621760 151621809 -66415349 + (TG)n Simple_repeat Simple_repeat 2 50 0 740 221 158 83 chr3 151621821 151622232 -66414926 - MLT1H LTR MaLR -1 548 107 216 0 0 0 chr3 151622244 151622268 -66414890 + (T)n Simple_repeat Simple_repeat 1 24 0 1555 93 10 0 chr3 151622305 151622509 -66414649 + AluSq SINE Alu 35 240 -73 1588 124 0 13 chr3 151622728 151622954 -66414204 - AluSg/x SINE Alu -22 290 68 221 254 113 14 chr3 151623133 151623204 -66413954 - L2 LINE L2 -7 3265 3188 243 313 113 58 chr3 151623475 151623750 -66413408 - L2 LINE L2 -176 3096 2807 520 261 109 74 chr3 151623999 151624229 -66412929 + MIR SINE MIR 8 245 -17 456 19 0 0 chr3 151624414 151624467 -66412691 + (TG)n Simple_repeat Simple_repeat 1 53 0 247 275 38 61 chr3 151625205 151625336 -66411822 - L2 LINE L2 -3 3269 3142 193 224 15 60 chr3 151625421 151625488 -66411670 - L2 LINE L2 0 3313 3250 283 246 0 31 chr3 151625789 151625854 -66411304 - MER81 DNA DNA -51 63 1 451 329 27 0 chr3 151626061 151626207 -66410951 + MIR SINE MIR 94 243 -19 590 259 222 37 chr3 151626720 151627099 -66410059 + LTR16A1 LTR ERVL 8 456 -1 672 345 47 14 chr3 151627158 151627520 -66409638 + HERV16 LTR ERVL 75 448 -4548 307 256 89 0 chr3 151627595 151627685 -66409473 + HERV16 LTR ERVL 559 656 -4340 1697 310 80 6 chr3 151627949 151628585 -66408573 + HERV16 LTR ERVL 896 1578 -3418 1859 282 55 59 chr3 151628631 151629390 -66407768 + HERV16 LTR ERVL 1685 2440 -2556 1646 325 71 4 chr3 151629773 151630482 -66406676 + HERV16 LTR ERVL 2437 3087 -1909 450 336 8 8 chr3 151630547 151630672 -66406486 - MER91A DNA MER1_type -58 138 14 241 350 57 24 chr3 151630831 151630954 -66406204 - L2 LINE L2 0 3313 3187 609 311 55 59 chr3 151631826 151632389 -66404769 + L1ME4a LINE L1 5364 5924 -197 827 175 7 14 chr3 151632792 151632935 -66404223 - FLAM_C SINE Alu 0 143 2 234 0 0 0 chr3 151633038 151633064 -66404094 + (T)n Simple_repeat Simple_repeat 1 26 0 25 0 0 0 chr3 151633198 151633223 -66403935 + AT_rich Low_complexity Low_complexity 1 25 0 564 312 81 28 chr3 151633286 151633533 -66403625 - MIR SINE MIR 0 262 3 1946 154 0 62 chr3 151633844 151634096 -66403062 - L1MA8 LINE L1 -8 6283 6060 2087 129 10 3 chr3 151634096 151634399 -66402759 - AluSg SINE Alu -5 305 1 1946 154 0 62 chr3 151634399 151634517 -66402641 - L1MA8 LINE L1 -231 6060 5936 2185 118 3 0 chr3 151634590 151634895 -66402263 - AluSx SINE Alu -4 308 3 1216 243 114 3 chr3 151634903 151635103 -66402055 - L1MD2 LINE L1 -1 6358 6182 261 83 0 0 chr3 151635103 151635139 -66402019 + (TG)n Simple_repeat Simple_repeat 2 37 0 1216 243 114 3 chr3 151635139 151635263 -66401895 - L1MD2 LINE L1 -177 6182 5998 452 246 94 0 chr3 151635529 151635667 -66401491 - MER103 DNA DNA -12 154 4 4633 248 98 32 chr3 151635923 151637137 -66400021 + L1ME2 LINE L1 2652 4046 -2100 2446 63 0 7 chr3 151637137 151637436 -66399722 + AluY SINE Alu 1 297 -14 4633 248 98 32 chr3 151637436 151638197 -66398961 + L1ME2 LINE L1 4046 4756 -1390 222 91 0 0 chr3 151638197 151638230 -66398928 + (TTTTA)n Simple_repeat Simple_repeat 1 33 0 18707 36 1 3 chr3 151638230 151642965 -66394193 - L1PA3 LINE L1 -24 6131 1 1148 267 105 21 chr3 151642966 151643984 -66393174 + L1ME2 LINE L1 4749 5876 -288 1140 236 62 73 chr3 151644011 151644595 -66392563 - L2 LINE L2 -20 3293 2710 600 163 0 0 chr3 151644598 151644690 -66392468 + L1MD1 LINE L1 5668 5759 -483 446 174 147 18 chr3 151644691 151644800 -66392358 + FLAM_A SINE Alu 19 141 -1 360 157 88 157 chr3 151644802 151644870 -66392288 + L1MD1 LINE L1 5760 5814 -428 1551 207 3 27 chr3 151644870 151645165 -66391993 - AluJo SINE Alu -24 288 1 360 157 88 157 chr3 151645165 151645243 -66391915 + L1MD1 LINE L1 5814 5896 -346 722 208 0 0 chr3 151645375 151645495 -66391663 - Tigger3b DNA MER2_type 0 1241 1122 19718 182 11 4 chr3 151645495 151650344 -66386814 + L1PA15 LINE L1 1969 6862 -6 2377 89 3 19 chr3 151650345 151650661 -66386497 + AluSp SINE Alu 1 311 -2 3940 123 91 20 chr3 151650664 151651380 -66385778 - Tigger3b DNA MER2_type -463 768 2 459 274 33 20 chr3 151651448 151651601 -66385557 - MIR SINE MIR -68 194 40 402 57 0 0 chr3 151652692 151652745 -66384413 + (TG)n Simple_repeat Simple_repeat 2 54 0 198 71 0 0 chr3 151652908 151652936 -66384222 + (CCAA)n Simple_repeat Simple_repeat 1 28 0 418 325 32 0 chr3 151653897 151654020 -66383138 - L2 LINE L2 -5 3308 3182 953 229 36 14 chr3 151654065 151654288 -66382870 - MIR SINE MIR -18 244 17 269 265 29 0 chr3 151654985 151655053 -66382105 - MIR SINE MIR -114 148 79 261 0 0 0 chr3 151655123 151655152 -66382006 + (A)n Simple_repeat Simple_repeat 1 29 0 812 239 258 39 chr3 151655656 151656149 -66381009 - L2 LINE L2 -388 2926 2326 283 353 84 18 chr3 151656157 151656324 -66380834 - MIR SINE MIR -77 185 8 4787 90 3 2 chr3 151657057 151657656 -66379502 - MER4A LTR ERV1 0 600 1 348 64 0 0 chr3 151658148 151658195 -66378963 + (CA)n Simple_repeat Simple_repeat 2 48 0 2062 205 109 22 chr3 151658219 151658854 -66378304 - L1MC5 LINE L1 -391 7570 6881 385 299 21 73 chr3 151658918 151659342 -66377816 + L1MC4a LINE L1 6305 6706 -1102 1882 168 0 0 chr3 151659519 151659810 -66377348 + AluJo SINE Alu 1 291 -21 299 210 150 20 chr3 151659819 151659919 -66377239 + L1MC5 LINE L1 6746 6858 -1103 2988 50 41 0 chr3 151661111 151661475 -66375683 - L1PA6 LINE L1 -1 6153 5775 1073 241 35 9 chr3 151661614 151661962 -66375196 + L1M4 LINE L1 4883 5239 -907 * 1345 202 41 6 chr3 151661954 151662296 -66374862 + L1M4 LINE L1 5009 5362 -784 * 27595 34 2 1 chr3 151662288 151666354 -66370804 + L1PA4 LINE L1 2086 6155 0 1711 85 55 0 chr3 151666369 151666604 -66370554 + Tigger1 DNA MER2_type 694 941 -1477 364 227 8 67 chr3 151666777 151666896 -66370262 + MLT1K LTR MaLR 79 190 -398 4123 112 27 58 chr3 151666899 151667072 -66370086 + Tigger1 DNA MER2_type 942 1119 -1299 1767 123 0 8 chr3 151667072 151667324 -66369834 - AluSg SINE Alu 0 310 61 4123 112 27 58 chr3 151667324 151667399 -66369759 + Tigger1 DNA MER2_type 1119 1195 -1223 2174 115 0 13 chr3 151667399 151667712 -66369446 + AluSx SINE Alu 1 309 -3 4123 112 27 58 chr3 151667712 151668165 -66368993 + Tigger1 DNA MER2_type 1195 1622 -796 852 207 64 5 chr3 151668138 151668326 -66368832 + MER115 DNA AcHobo 495 693 0 * 530 236 79 45 chr3 151668977 151669155 -66368003 + MLT1K LTR MaLR 79 262 -326 566 234 11 46 chr3 151669217 151669392 -66367766 + MLT1K LTR MaLR 414 582 -6 329 257 37 9 chr3 151669393 151669502 -66367656 - MIR3 SINE MIR -53 155 44 476 273 180 6 chr3 151670093 151670276 -66366882 + MIR SINE MIR 36 250 -12 253 394 24 0 chr3 151670662 151670789 -66366369 - MIR3 SINE MIR -76 132 3 182 62 31 0 chr3 151670879 151670911 -66366247 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 305 251 17 51 chr3 151672580 151672755 -66364403 + (CA)n Simple_repeat Simple_repeat 2 170 0 669 259 98 5 chr3 151673483 151673688 -66363470 + MIR SINE MIR 20 243 -19 207 69 0 0 chr3 151674417 151674446 -66362712 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 243 233 68 27 chr3 151674464 151674537 -66362621 - L2 LINE L2 -43 3270 3195 189 239 282 0 chr3 151674548 151674665 -66362493 - MIR3 SINE MIR -52 156 7 222 37 0 0 chr3 151674913 151674940 -66362218 + (TAA)n Simple_repeat Simple_repeat 1 27 0 198 243 0 0 chr3 151675005 151675042 -66362116 - L2 LINE L2 -211 3061 3025 2672 232 128 11 chr3 151675413 151677162 -66359996 + L1MA9 LINE L1 1233 2946 -4161 * 15962 165 20 21 chr3 151677158 151679548 -66357610 + L1MA9 LINE L1 3166 5555 -1717 1649 173 31 21 chr3 151679548 151679837 -66357321 + AluJb SINE Alu 1 292 -20 15962 165 20 21 chr3 151679837 151681548 -66355610 + L1MA9 LINE L1 5555 7266 -6 322 171 0 14 chr3 151681584 151681654 -66355504 + L1ME4a LINE L1 6051 6119 -2 554 164 134 8 chr3 151681879 151682013 -66355145 - MER20 DNA MER1_type -67 152 2 720 293 105 31 chr3 151682013 151682453 -66354705 + L1M4 LINE L1 5371 5855 -323 2133 124 13 0 chr3 151683674 151683980 -66353178 + AluSg SINE Alu 1 310 0 2104 135 0 3 chr3 151684094 151684391 -66352767 + AluJb SINE Alu 1 296 -16 34518 76 6 2 chr3 151684401 151688910 -66348248 + L1P LINE L1 11 4534 -1612 10589 62 27 4 chr3 151689010 151690360 -66346798 - L1P LINE L1 -4765 1381 2 1704 103 7 52 chr3 151690360 151690631 -66346527 - Tigger1 DNA MER2_type -1708 710 452 1295 250 73 29 chr3 151691361 151691538 -66345620 + MLT1J LTR MaLR 4 172 -339 722 231 148 0 chr3 151691538 151691720 -66345438 + MER63A DNA MER1_type 2 210 0 1295 250 73 29 chr3 151691720 151691994 -66345164 + MLT1J LTR MaLR 172 475 -36 343 344 8 8 chr3 151692561 151692686 -66344472 + L2 LINE L2 3136 3260 -12 261 0 0 0 chr3 151692715 151692744 -66344414 + (T)n Simple_repeat Simple_repeat 1 29 0 636 209 13 70 chr3 151692836 151692994 -66344164 + MER20 DNA MER1_type 30 178 -41 262 360 9 0 chr3 151693426 151693537 -66343621 + L2 LINE L2 3149 3260 -12 252 0 0 0 chr3 151693567 151693595 -66343563 + (T)n Simple_repeat Simple_repeat 1 28 0 888 143 17 143 chr3 151693667 151693897 -66343261 + MER20 DNA MER1_type 19 219 0 529 277 130 44 chr3 151694392 151694753 -66342405 - MLT1J LTR MaLR -10 501 110 259 119 0 48 chr3 151694728 151694770 -66342388 - LTR67 LTR ERVL -419 138 99 * 255 229 205 41 chr3 151695675 151695797 -66341361 - MIR SINE MIR -11 251 110 745 218 90 0 chr3 151695816 151696004 -66341154 + MIR SINE MIR 44 248 -14 332 231 48 39 chr3 151696142 151696246 -66340912 - MIR SINE MIR -71 137 33 188 262 0 0 chr3 151697275 151697317 -66339841 + L3b LINE CR1 1532 1573 -10 3424 226 47 28 chr3 151701035 151701292 -66335866 + L1ME3 LINE L1 3900 4151 -2011 2304 147 3 9 chr3 151701292 151701638 -66335520 + MER2 DNA MER2_type 1 344 0 3424 226 47 28 chr3 151701638 151703550 -66333608 + L1ME3 LINE L1 4151 6158 -4 647 268 116 0 chr3 151703630 151703820 -66333338 + MIR SINE MIR 23 234 -28 878 217 32 31 chr3 151703846 151704112 -66333046 - L1P LINE L1 -747 5408 5137 5279 26 3 0 chr3 151704194 151704773 -66332385 - L1PA4 LINE L1 -4 6151 5571 3110 224 27 25 chr3 151704796 151705688 -66331470 - L1P LINE L1 -1022 5124 4280 226 254 90 41 chr3 151806870 151806992 -66230166 - MIR3 SINE MIR -70 138 11 22 106 0 0 chr3 151807176 151807261 -66229897 + AT_rich Low_complexity Low_complexity 1 85 0 243 0 0 0 chr3 151807280 151807307 -66229851 + (TG)n Simple_repeat Simple_repeat 2 28 0 390 271 147 6 chr3 151807433 151807603 -66229555 + MIR SINE MIR 8 201 -61 198 0 0 0 chr3 151808116 151808138 -66229020 + (CAAAAA)n Simple_repeat Simple_repeat 1 22 0 546 117 19 10 chr3 151808540 151808607 -66228551 + GA-rich Low_complexity Low_complexity 1 104 0 303 28 0 0 chr3 151808607 151808643 -66228515 + (GA)n Simple_repeat Simple_repeat 1 36 0 431 249 146 12 chr3 151808719 151808884 -66228274 + MIR SINE MIR 57 243 -19 198 103 0 0 chr3 151808901 151808930 -66228228 + (TTC)n Simple_repeat Simple_repeat 3 31 0 620 271 93 31 chr3 151809045 151809270 -66227888 + MIR SINE MIR 24 262 0 387 263 30 0 chr3 151809515 151809614 -66227544 + L2 LINE L2 3194 3295 -18 1931 104 0 0 chr3 151809667 151809918 -66227240 + AluSx SINE Alu 58 308 -4 3716 202 54 54 chr3 151810071 151811064 -66226094 - L1MC4a LINE L1 0 7808 6816 203 221 53 53 chr3 151811134 151811229 -66225929 - MIR3 SINE MIR -111 97 3 373 213 28 35 chr3 151811327 151811468 -66225690 + L1MC4 LINE L1 7498 7637 -405 1077 140 12 12 chr3 151811485 151811656 -66225502 + MLT1C LTR MaLR 1 171 -296 237 169 39 13 chr3 151811763 151811840 -66225318 + (TTA)n Simple_repeat Simple_repeat 1 79 0 716 227 113 4 chr3 151811885 151812114 -66225044 + L1MC4 LINE L1 7789 8042 0 376 269 90 22 chr3 151812338 151812472 -66224686 + MIR SINE MIR 48 190 -72 1560 191 47 16 chr3 151812857 151813239 -66223919 + L1ME1 LINE L1 4904 5297 -849 1973 185 51 22 chr3 151813341 151813752 -66223406 + L1ME1 LINE L1 5509 5931 -235 418 280 0 0 chr3 151813943 151814050 -66223108 + MIR SINE MIR 47 153 -109 276 246 91 36 chr3 151814322 151814432 -66222726 + MIR3 SINE MIR 85 200 -8 291 336 89 0 chr3 151815558 151815704 -66221454 + MIR SINE MIR 89 247 -15 827 220 64 0 chr3 151815802 151815975 -66221183 + MER5A DNA MER1_type 1 184 -5 390 269 9 9 chr3 151816177 151816285 -66220873 - MLT1L LTR MaLR -2 613 506 401 307 47 0 chr3 151816464 151816591 -66220567 - MLT1L LTR MaLR -340 275 143 2360 157 78 5 chr3 151816600 151817034 -66220124 + MLT1C LTR MaLR 1 466 -1 238 221 107 2 chr3 151817170 151817237 -66219921 + MIR SINE MIR 24 97 -111 216 152 22 22 chr3 151817451 151817497 -66219661 + GA-rich Low_complexity Low_complexity 2 47 0 23 54 0 0 chr3 151817809 151817846 -66219312 + AT_rich Low_complexity Low_complexity 1 37 0 690 191 68 0 chr3 151818095 151818242 -66218916 - MER53 DNA DNA -4 185 29 201 129 0 0 chr3 151818243 151818274 -66218884 + (ATG)n Simple_repeat Simple_repeat 1 31 0 204 40 0 0 chr3 151819324 151819349 -66217809 + (A)n Simple_repeat Simple_repeat 1 25 0 287 305 53 23 chr3 151819643 151819774 -66217384 + MIR SINE MIR 73 207 -55 204 67 0 0 chr3 151821043 151821073 -66216085 + (TG)n Simple_repeat Simple_repeat 1 30 0 616 273 11 5 chr3 151822194 151822381 -66214777 + MIR SINE MIR 63 250 -12 296 321 46 28 chr3 151822601 151822826 -66214332 + MIR SINE MIR 15 239 -23 211 282 59 24 chr3 151822963 151823048 -66214110 + MIR SINE MIR 20 107 -101 1145 119 13 0 chr3 151823990 151824149 -66213009 - MER20 DNA MER1_type -58 161 1 299 354 0 0 chr3 151824443 151824542 -66212616 + MIR SINE MIR 56 154 -108 264 292 0 22 chr3 151824591 151824680 -66212478 + L2 LINE L2 3182 3268 -4 260 322 164 6 chr3 151825314 151825497 -66211661 + MIR SINE MIR 19 230 -32 1341 259 107 6 chr3 151825779 151826254 -66210904 + LTR33A LTR ERVL 1 523 0 2210 166 30 38 chr3 151826856 151827283 -66209875 + MSTB LTR MaLR 2 425 -1 284 286 0 0 chr3 151827409 151827479 -66209679 + MIR SINE MIR 28 97 -165 368 251 12 34 chr3 151827840 151828202 -66208956 + CT-rich Low_complexity Low_complexity 1 353 0 4179 129 45 9 chr3 151828758 151829432 -66207726 - MER39 LTR ERV1 -2 705 8 274 259 37 56 chr3 151829994 151830102 -66207056 + MER5A DNA MER1_type 46 151 -38 509 268 49 6 chr3 151830298 151830481 -66206677 - MIR SINE MIR -70 192 2 478 192 96 0 chr3 151831171 151831275 -66205883 + MER103 DNA DNA 53 166 0 688 299 9 22 chr3 151832406 151832637 -66204521 - MIR SINE MIR -8 254 27 213 195 24 49 chr3 151832976 151833058 -66204100 + (CAAA)n Simple_repeat Simple_repeat 3 82 0 1024 278 22 49 chr3 151835455 151835865 -66201293 + L1MC/D LINE L1 5255 5653 -2155 330 285 22 0 chr3 151836648 151836759 -66200399 + L1MC/D LINE L1 5697 5818 -303 331 302 31 0 chr3 151837324 151837420 -66199738 + L2 LINE L2 3134 3232 -40 344 326 48 7 chr3 151837530 151837677 -66199481 + L2 LINE L2 3119 3271 -1 784 210 122 41 chr3 151838145 151838416 -66198742 + L1MC4 LINE L1 7738 8030 -12 1569 210 60 25 chr3 151838694 151839115 -66198043 - L1MB7 LINE L1 -17 6167 5734 1903 106 0 109 chr3 151839506 151839633 -66197525 + AluSq SINE Alu 1 140 -163 279 0 0 0 chr3 151839633 151839664 -66197494 + (TG)n Simple_repeat Simple_repeat 2 32 0 1903 106 0 109 chr3 151839664 151839876 -66197282 + AluSq SINE Alu 140 303 0 264 30 0 0 chr3 151840056 151840089 -66197069 + (TG)n Simple_repeat Simple_repeat 1 33 0 348 225 123 36 chr3 151841881 151842019 -66195139 + Charlie8 DNA MER1_type 105 254 -2163 360 0 0 0 chr3 151842791 151842831 -66194327 + (CA)n Simple_repeat Simple_repeat 2 41 0 2036 161 3 0 chr3 151843061 151843365 -66193793 - AluJb SINE Alu -7 305 1 2228 132 0 0 chr3 151843414 151843718 -66193440 - AluY SINE Alu -7 304 1 2150 95 25 0 chr3 151844412 151844696 -66192462 + AluSx SINE Alu 3 293 -19 313 263 167 9 chr3 151845034 151845148 -66192010 + MER5A DNA MER1_type 1 132 -57 364 330 15 53 chr3 151845619 151845804 -66191354 - MIR SINE MIR -62 146 15 346 254 15 45 chr3 151846296 151846430 -66190728 + MER103 DNA DNA 6 135 -31 190 237 52 118 chr3 151847260 151847395 -66189763 + L2 LINE L2 3172 3297 -16 387 200 0 0 chr3 151847429 151847504 -66189654 + MER5A DNA MER1_type 1 75 -114 346 147 0 44 chr3 151847504 151847572 -66189586 + Alu SINE Alu 238 302 0 388 235 78 0 chr3 151847577 151847692 -66189466 + MER5A DNA MER1_type 61 184 -5 233 275 168 47 chr3 151847733 151847882 -66189276 + MIR SINE MIR 57 223 -39 225 327 62 9 chr3 151848365 151848478 -66188680 - MIR3 SINE MIR -12 196 78 312 70 0 0 chr3 151848879 151848922 -66188236 + (CA)n Simple_repeat Simple_repeat 2 44 0 582 86 0 0 chr3 151849890 151849971 -66187187 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 220 284 97 75 chr3 151850123 151850257 -66186901 + MIR3 SINE MIR 12 148 -60 983 268 44 78 chr3 151850262 151850759 -66186399 + L2 LINE L2 2231 2710 -604 1192 186 0 35 chr3 151850892 151851118 -66186040 - AluJo SINE Alu -94 218 1 594 265 221 9 chr3 151851135 151851452 -66185706 + L2 LINE L2 2927 3310 -3 1665 227 129 30 chr3 151852513 151853054 -66184104 + MLT1G1 LTR MaLR 1 595 0 334 240 0 0 chr3 151854888 151854963 -66182195 - MIR SINE MIR -111 151 77 2590 62 7 0 chr3 151855271 151855580 -66181578 + AluY SINE Alu 1 311 0 303 286 236 0 chr3 151856359 151856499 -66180659 - MIR SINE MIR -11 251 79 491 286 75 5 chr3 151857180 151857379 -66179779 - MIR SINE MIR -43 219 7 1519 271 89 60 chr3 151858277 151859097 -66178061 + L1MEd LINE L1 223 1066 -5053 328 233 57 93 chr3 151859101 151859294 -66177864 + HAL1 LINE L1 1424 1609 -898 946 217 33 5 chr3 151859731 151859915 -66177243 - MER5A DNA MER1_type 0 189 1 204 280 13 27 chr3 151860073 151860148 -66177010 + MIR SINE MIR 168 241 -21 250 250 132 21 chr3 151861622 151861766 -66175392 - L1MC4a LINE L1 -1785 6023 5864 11230 135 17 66 chr3 151861784 151865134 -66172024 - L1MA3 LINE L1 0 7724 4549 239 176 0 0 chr3 151865356 151865407 -66171751 - L1MB5 LINE L1 0 6174 6124 2124 188 55 12 chr3 151865508 151865998 -66171160 - L1MB5 LINE L1 -192 5982 5472 2680 94 17 3 chr3 151866013 151866374 -66170784 - L1PB3 LINE L1 -7 6147 5782 354 138 0 0 chr3 151866380 151866438 -66170720 + (TA)n Simple_repeat Simple_repeat 1 58 0 1374 117 5 0 chr3 151866440 151866637 -66170521 - L1PB3 LINE L1 -363 5791 5594 5168 194 9 10 chr3 151866746 151867866 -66169292 - L1PB3 LINE L1 -903 5243 4125 18333 167 92 10 chr3 151867869 151872092 -66165066 - L1MA3 LINE L1 -2990 4575 8 543 266 61 37 chr3 151872095 151872309 -66164849 - L1MC4a LINE L1 -1929 5879 5661 470 260 37 44 chr3 151872343 151872616 -66164542 - L1MC4a LINE L1 -2274 5534 5264 2553 102 128 10 chr3 151872617 151873000 -66164158 + MSTA LTR MaLR 1 428 0 195 129 0 0 chr3 151874993 151875024 -66162134 + (A)n Simple_repeat Simple_repeat 1 31 0 1416 236 33 31 chr3 151875081 151875568 -66161590 - HAL1 LINE L1 0 2507 2020 267 204 0 0 chr3 151875587 151875641 -66161517 - MER116 DNA Mariner -26 54 1 21 0 0 0 chr3 151875915 151875936 -66161222 + AT_rich Low_complexity Low_complexity 1 21 0 1878 149 4 0 chr3 151875936 151876211 -66160947 - AluSx SINE Alu -17 295 20 285 306 54 54 chr3 151876259 151876501 -66160657 - HAL1 LINE L1 -2169 338 97 670 180 0 7 chr3 151876765 151876904 -66160254 + LTR37A LTR ERV1 289 426 0 211 173 19 19 chr3 151877332 151877384 -66159774 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 339 250 78 91 chr3 151877475 151877707 -66159451 + MER31-int LTR ERV1 1049 1277 -3659 470 205 31 62 chr3 151877771 151877932 -66159226 + MER31-int LTR ERV1 1291 1446 -3490 735 192 47 61 chr3 151878516 151878730 -66158428 - Charlie1 DNA MER1_type 0 2761 2551 242 241 0 0 chr3 151878703 151878757 -66158401 - Charlie1 DNA MER1_type -2655 106 53 * 481 286 18 0 chr3 151878946 151879058 -66158100 + MER81 DNA DNA 1 114 0 283 330 0 10 chr3 151879151 151879248 -66157910 + GA-rich Low_complexity Low_complexity 1 96 0 216 256 134 24 chr3 151879943 151880025 -66157133 + MER5B DNA MER1_type 1 91 -87 21 0 0 0 chr3 151880329 151880350 -66156808 + AT_rich Low_complexity Low_complexity 1 21 0 240 318 129 28 chr3 151880625 151880773 -66156385 - L1 LINE L1 -1909 4237 4105 2198 125 0 3 chr3 151880773 151881086 -66156072 - AluSx SINE Alu 0 312 1 240 318 129 28 chr3 151881086 151881510 -66155648 - L1 LINE L1 -2041 4105 3607 1461 315 57 22 chr3 151881547 151882506 -66154652 + L1ME3A LINE L1 4176 5168 -978 347 338 115 32 chr3 151882715 151883238 -66153920 + L1ME3A LINE L1 5372 5937 -233 360 0 0 0 chr3 151883331 151883371 -66153787 + (CA)n Simple_repeat Simple_repeat 2 41 0 450 300 155 22 chr3 151883395 151883808 -66153350 - L1 LINE L1 -2567 3579 3112 2380 65 3 3 chr3 151883818 151884131 -66153027 - AluY SINE Alu 0 313 1 2121 211 31 16 chr3 151884131 151884642 -66152516 - L1 LINE L1 -857 5289 4771 1080 216 7 4 chr3 151884642 151884938 -66152220 - L1MC/D LINE L1 -746 5400 5204 231 204 0 0 chr3 151886465 151886564 -66150594 + (TTG)n Simple_repeat Simple_repeat 1 99 0 1268 204 67 20 chr3 151886566 151886865 -66150293 - MLT1C LTR MaLR -45 422 110 1003 194 18 16 chr3 151887263 151887679 -66149479 - MLT1F1 LTR MaLR -2 565 1 1862 123 7 76 chr3 151887924 151888250 -66148908 + AluSq SINE Alu 5 309 0 240 300 38 0 chr3 151888428 151888508 -66148650 + MIR SINE MIR 96 178 -84 614 214 102 37 chr3 151888508 151888695 -66148463 - MLT1K LTR MaLR -7 581 383 32 0 0 0 chr3 151889378 151889410 -66147748 + AT_rich Low_complexity Low_complexity 1 32 0 2240 208 64 47 chr3 151889412 151890156 -66147002 - L1MD3 LINE L1 -1 7994 7181 2138 121 0 0 chr3 151890348 151890637 -66146521 + AluSg SINE Alu 5 293 -17 34 42 0 0 chr3 151890780 151890828 -66146330 + AT_rich Low_complexity Low_complexity 1 48 0 897 277 127 41 chr3 151891447 151891959 -66145199 - LTR67 LTR ERVL 0 557 2 859 204 43 21 chr3 151893172 151893424 -66143734 - MIR SINE MIR -24 238 13 2175 113 10 0 chr3 151893567 151893869 -66143289 + AluSx SINE Alu 1 305 -7 291 303 91 23 chr3 151894488 151894620 -66142538 + L2 LINE L2 2628 2768 -546 297 320 30 0 chr3 151894832 151894932 -66142226 + L2 LINE L2 3211 3313 0 1005 178 17 69 chr3 151895105 151895336 -66141822 - MER20 DNA MER1_type 0 219 1 546 228 26 129 chr3 151895355 151895414 -66141744 - MER5B DNA MER1_type -5 173 109 1757 163 21 0 chr3 151895414 151895696 -66141462 + AluJb SINE Alu 1 288 -24 546 228 26 129 chr3 151895696 151895829 -66141329 - MER5B DNA MER1_type -69 109 1 312 316 11 0 chr3 151897328 151897423 -66139735 + MIR SINE MIR 49 144 -118 205 261 22 43 chr3 151898462 151898554 -66138604 - MIR SINE MIR -145 117 28 232 314 12 0 chr3 151899268 151899354 -66137804 + MIR SINE MIR 66 152 -110 2207 114 3 26 chr3 151900209 151900516 -66136642 + AluSq SINE Alu 1 300 -13 391 285 65 5 chr3 151900553 151900739 -66136419 - L1ME4a LINE L1 -130 5991 5795 757 206 18 18 chr3 151900746 151900916 -66136242 - MER45A DNA AcHobo -8 170 1 874 261 85 15 chr3 151900916 151901188 -66135970 - L1ME4a LINE L1 -316 5805 5515 360 89 0 0 chr3 151901539 151901584 -66135574 - AluS SINE Alu -230 73 29 186 287 35 35 chr3 151901634 151901721 -66135437 - MIR SINE MIR -84 124 38 337 278 40 15 chr3 151902355 151902505 -66134653 + MIR SINE MIR 5 162 -62 225 140 35 70 chr3 151902763 151902820 -66134338 + MLT1H1 LTR MaLR 270 324 -225 375 184 155 10 chr3 151902844 151902947 -66134211 + MLT1H1 LTR MaLR 438 555 0 222 281 146 0 chr3 151902949 151903038 -66134120 + MIR SINE MIR 160 261 -1 273 241 81 0 chr3 151904621 151904708 -66132450 - MIR SINE MIR -149 113 20 201 200 0 0 chr3 151904915 151904955 -66132203 - L2 LINE L2 -23 3249 3210 215 242 76 0 chr3 151905679 151905745 -66131413 - L2 LINE L2 -177 3095 3025 342 305 232 0 chr3 151905820 151906010 -66131148 - MIR SINE MIR -28 234 1 2245 120 3 0 chr3 151906397 151906698 -66130460 + AluSq SINE Alu 3 304 -9 311 60 20 0 chr3 151907181 151907231 -66129927 + (TA)n Simple_repeat Simple_repeat 2 52 0 230 248 95 19 chr3 151907333 151907438 -66129720 + L2 LINE L2 3201 3313 0 197 373 20 10 chr3 151907571 151907673 -66129485 - MIR SINE MIR -139 123 21 343 282 56 18 chr3 151907828 151908026 -66129132 + MIR SINE MIR 42 247 -15 523 224 81 31 chr3 151908276 151908437 -66128721 - MIR SINE MIR -71 191 23 517 284 14 0 chr3 151908482 151908623 -66128535 + MIR SINE MIR 120 262 0 216 268 97 57 chr3 151908978 151909206 -66127952 - L2 LINE L2 -410 2904 2668 305 169 127 0 chr3 151909239 151909310 -66127848 + MIR SINE MIR 183 262 0 290 282 137 0 chr3 151909630 151909754 -66127404 + MIR SINE MIR 118 258 -4 234 266 38 13 chr3 151909801 151909880 -66127278 - L1ME LINE L1 -439 5682 5602 24 0 0 0 chr3 151909905 151909929 -66127229 + AT_rich Low_complexity Low_complexity 1 24 0 238 271 17 0 chr3 151910072 151910131 -66127027 + GA-rich Low_complexity Low_complexity 4 63 0 705 234 28 0 chr3 151910271 151910416 -66126742 + MLT1G1 LTR MaLR 447 595 0 636 273 60 0 chr3 151910420 151910603 -66126555 - MIR SINE MIR -65 197 4 672 221 0 8 chr3 151910873 151910995 -66126163 + MER5A DNA MER1_type 2 122 -67 474 271 104 73 chr3 151911069 151911423 -66125735 - MLT1K LTR MaLR -8 580 216 180 237 0 0 chr3 151911789 151911827 -66125331 - MIR SINE MIR -109 153 116 646 282 44 35 chr3 151912028 151912255 -66124903 + MIR SINE MIR 28 256 -6 204 40 0 0 chr3 151912562 151912587 -66124571 + (TG)n Simple_repeat Simple_repeat 2 26 0 220 184 0 0 chr3 151912707 151912745 -66124413 + (TGGA)n Simple_repeat Simple_repeat 1 38 0 326 311 33 0 chr3 151912790 151912880 -66124278 + L1MC4a LINE L1 5811 5903 -1905 355 254 109 48 chr3 151913896 151914039 -66123119 + MER5A DNA MER1_type 1 157 -32 198 71 0 0 chr3 151914039 151914067 -66123091 + (CTG)n Simple_repeat Simple_repeat 2 29 0 355 254 109 48 chr3 151914067 151914088 -66123070 + MER5A DNA MER1_type 157 175 -14 769 223 47 88 chr3 151914152 151914426 -66122732 - Charlie8 DNA MER1_type -2143 274 12 575 267 92 73 chr3 151914538 151914980 -66122178 + L2 LINE L2 2779 3230 -42 436 344 61 9 chr3 151915015 151915227 -66121931 + L2 LINE L2 2971 3193 -79 184 313 54 48 chr3 151915948 151916114 -66121044 + L2 LINE L2 3017 3183 -89 343 222 222 9 chr3 151916243 151916351 -66120807 + MIR SINE MIR 123 253 -9 187 205 271 74 chr3 151916918 151917040 -66120118 + MIR3 SINE MIR 1 146 -62 181 264 0 38 chr3 151917079 151917132 -66120026 + L2 LINE L2 3215 3265 -7 559 272 77 0 chr3 151917711 151917880 -66119278 + MIR SINE MIR 53 234 -28 2121 75 0 3 chr3 151919430 151919738 -66117420 + AluSx SINE Alu 2 308 0 314 207 0 0 chr3 151919762 151919820 -66117338 + MER5A DNA MER1_type 132 189 0 583 245 139 18 chr3 151919823 151920096 -66117062 - L1MC4a LINE L1 -1829 5979 5674 271 242 32 0 chr3 151920320 151920382 -66116776 - MER91A DNA MER1_type -35 161 98 888 176 88 49 chr3 151920422 151920626 -66116532 - MER20 DNA MER1_type -4 215 4 229 196 22 0 chr3 151921057 151921103 -66116055 + L2 LINE L2 3203 3249 -23 428 283 62 0 chr3 151921447 151921592 -66115566 + MIR SINE MIR 29 182 -80 2032 141 3 0 chr3 151922512 151922818 -66114340 + AluSx SINE Alu 1 307 -5 735 244 39 22 chr3 151923683 151923912 -66113246 - L1MC5 LINE L1 -33 7928 7696 1812 193 144 12 chr3 151923912 151924321 -66112837 - MLT1D LTR MaLR -42 463 1 29 0 0 0 chr3 151924493 151924522 -66112636 + AT_rich Low_complexity Low_complexity 1 29 0 313 234 179 11 chr3 151924754 151924938 -66112220 - L1MC5 LINE L1 -262 7699 7485 23 0 0 0 chr3 151924944 151924967 -66112191 + AT_rich Low_complexity Low_complexity 1 23 0 1800 249 66 24 chr3 151924970 151925075 -66112083 - L1MC5 LINE L1 -1872 5936 5837 2581 39 0 3 chr3 151925075 151925383 -66111775 - AluY SINE Alu -4 307 1 1800 249 66 24 chr3 151925383 151925778 -66111380 - L1MC5 LINE L1 -1971 5837 5415 371 218 49 70 chr3 151927776 151927918 -66109240 - MIR SINE MIR -116 146 8 293 250 74 46 chr3 151928583 151928691 -66108467 + MIR SINE MIR 21 131 -131 189 289 52 41 chr3 151929054 151929151 -66108007 + L2 LINE L2 3183 3280 -33 379 275 99 21 chr3 151929201 151929343 -66107815 - L2 LINE L2 -4 3268 3116 296 344 23 16 chr3 151929481 151929609 -66107549 - L2 LINE L2 -466 2848 2720 953 214 60 49 chr3 151930115 151930561 -66106597 + MLT1H LTR MaLR 5 541 -8 473 345 19 24 chr3 151930838 151931044 -66106114 - MIR SINE MIR -57 205 1 407 273 67 7 chr3 151932057 151932207 -66104951 + MER5A DNA MER1_type 27 185 -4 230 56 28 0 chr3 151932604 151932640 -66104518 + (TCCC)n Simple_repeat Simple_repeat 4 40 0 602 201 30 0 chr3 151934006 151934248 -66102910 + GA-rich Low_complexity Low_complexity 1 249 0 377 303 42 30 chr3 151934668 151934833 -66102325 + L1MC/D LINE L1 5574 5740 -2068 690 90 0 0 chr3 151934915 151935004 -66102154 + AluSg/x SINE Alu 203 291 -19 298 196 18 0 chr3 151935034 151935090 -66102068 + MER103 DNA DNA 25 81 -85 247 226 0 0 chr3 151935110 151935163 -66101995 - L2 LINE L2 -3 3310 3258 291 278 73 26 chr3 151935241 151935432 -66101726 - L2 LINE L2 -217 3055 2856 1970 221 55 11 chr3 151935524 151936175 -66100983 - L1ME1 LINE L1 -5 6161 5341 1268 259 43 87 chr3 151936176 151936716 -66100442 - MER68 LTR ERV1 -30 532 17 695 182 25 0 chr3 151936730 151936889 -66100269 - L1ME1 LINE L1 -800 5346 5184 453 374 17 0 chr3 151936896 151937126 -66100032 - L2 LINE L2 -569 2745 2512 205 354 0 12 chr3 151937247 151937329 -66099829 + MIR3 SINE MIR 125 205 -3 294 278 26 17 chr3 151938311 151938426 -66098732 + L2 LINE L2 2920 3035 -278 299 247 34 11 chr3 151938455 151938544 -66098614 - MER69 DNA AcHobo -4 2522 2432 451 302 63 6 chr3 151938673 151938832 -66098326 - MIR3 SINE MIR -7 201 34 185 219 24 0 chr3 151941069 151941110 -66096048 + MIR SINE MIR 64 105 -103 808 269 64 16 chr3 151941348 151941597 -66095561 - MIR SINE MIR 0 262 2 295 271 57 43 chr3 151941981 151942121 -66095037 + MIR3 SINE MIR 15 156 -52 270 333 0 12 chr3 151942236 151942317 -66094841 + MIR SINE MIR 12 91 -171 222 171 0 0 chr3 151942342 151942383 -66094775 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 350 278 142 35 chr3 151943353 151943522 -66093636 + MIR SINE MIR 20 206 -56 688 289 106 28 chr3 151944140 151944648 -66092510 - L1ME4a LINE L1 -1 6120 5573 45176 34 5 2 chr3 151944675 151950797 -66086361 - L1PA4 LINE L1 -3 6152 13 289 290 122 23 chr3 151951756 151951887 -66085271 + MER5A DNA MER1_type 22 165 -24 277 345 110 14 chr3 151951777 151951922 -66085236 - MER5A DNA MER1_type -30 159 1 * 512 242 13 13 chr3 151952033 151952182 -66084976 - MER103 DNA DNA 0 166 18 348 159 32 0 chr3 151953094 151953157 -66084001 - L2 LINE L2 -1 3312 3248 308 304 70 0 chr3 151953363 151953478 -66083680 + MIR SINE MIR 126 248 -14 664 274 25 20 chr3 151953517 151953721 -66083437 + MIR SINE MIR 6 210 -52 234 343 51 15 chr3 151953922 151954059 -66083099 + MIR SINE MIR 2 143 -119 535 243 233 11 chr3 151954192 151954381 -66082777 + MIR SINE MIR 32 262 0 452 307 121 9 chr3 151954665 151954880 -66082278 + MIR SINE MIR 24 262 0 362 229 60 0 chr3 151955242 151955325 -66081833 + MIR SINE MIR 64 151 -111 514 228 96 30 chr3 151955693 151955860 -66081298 + MER5B DNA MER1_type 1 178 0 434 208 288 8 chr3 151955925 151956050 -66081108 + MER5B DNA MER1_type 17 176 -2 21 0 0 0 chr3 151956063 151956084 -66081074 + AT_rich Low_complexity Low_complexity 1 21 0 2002 89 4 4 chr3 151956086 151956355 -66080803 + AluSx SINE Alu 1 269 -43 503 288 106 12 chr3 151956615 151956785 -66080373 - MIR SINE MIR -5 257 72 359 268 82 0 chr3 151957821 151957918 -66079240 - MIR SINE MIR -110 152 48 278 253 63 0 chr3 151959010 151959089 -66078069 + MLT1I LTR MaLR 324 407 -2 1132 263 86 8 chr3 151959089 151959473 -66077685 - L1M4 LINE L1 -2147 3999 3586 438 105 0 0 chr3 151959491 151959548 -66077610 - AluSx SINE Alu -21 290 234 1297 129 0 0 chr3 151959548 151959734 -66077424 - AluSx SINE Alu -126 186 1 310 261 73 18 chr3 151959971 151960136 -66077022 - L1M4 LINE L1 -2637 3509 3336 * 318 253 48 0 chr3 151960135 151960218 -66076940 + L1MC4 LINE L1 7344 7430 -612 324 277 11 0 chr3 151960247 151960341 -66076817 + MER94 DNA DNA 3 97 -37 633 245 112 36 chr3 151960415 151960693 -66076465 + L1MC4 LINE L1 7525 7823 -219 1034 229 36 93 chr3 151960697 151961203 -66075955 + L1ME1 LINE L1 5685 6161 -5 2040 114 19 7 chr3 151961227 151961535 -66075623 + AluSx SINE Alu 1 312 0 353 240 51 106 chr3 151961634 151961674 -66075484 + L1MC4 LINE L1 7800 7841 -201 2148 136 7 0 chr3 151961674 151961984 -66075174 + AluSx SINE Alu 1 312 0 353 240 51 106 chr3 151961984 151962197 -66074961 + L1MC4 LINE L1 7841 8039 -3 24 0 0 0 chr3 151962217 151962241 -66074917 + AT_rich Low_complexity Low_complexity 1 24 0 2301 243 56 32 chr3 151963343 151963670 -66073488 - L1M4 LINE L1 -2792 3354 3036 1093 98 4 183 chr3 151963670 151963905 -66073253 - 7SK RNA RNA 0 193 1 2301 243 56 32 chr3 151963905 151964447 -66072711 - L1M4 LINE L1 -3110 3036 2464 1138 207 26 46 chr3 151964447 151964751 -66072407 - L1MEd LINE L1 -3405 2724 2427 282 313 120 40 chr3 151964867 151965142 -66072016 - L1MEd LINE L1 -5291 828 532 1681 124 30 0 chr3 151965580 151965846 -66071312 + L1PA14 LINE L1 5886 6159 -2 676 306 213 27 chr3 151967826 151968593 -66068565 + HAL1 LINE L1 37 945 -1562 3515 265 38 21 chr3 151968632 151969059 -66068099 + HAL1 LINE L1 1180 1598 -909 757 215 70 65 chr3 151969059 151969273 -66067885 - MER58C DNA MER1_type 0 215 1 3515 265 38 21 chr3 151969273 151970059 -66067099 + HAL1 LINE L1 1598 2413 -94 28 48 0 0 chr3 151970090 151970132 -66067026 + AT_rich Low_complexity Low_complexity 1 42 0 325 213 38 0 chr3 151970295 151970375 -66066783 - L1ME4a LINE L1 -238 5883 5801 41684 40 28 1 chr3 151970413 151975492 -66061666 + L1P LINE L1 2 5215 -931 441 0 0 0 chr3 151976373 151976422 -66060736 + (TA)n Simple_repeat Simple_repeat 1 49 0 232 288 181 49 chr3 151976447 151976999 -66060159 - L1M4 LINE L1 -1807 4339 3715 335 234 7 22 chr3 151977131 151977231 -66059927 + MLT1H LTR MaLR 1 174 -375 1566 234 119 25 chr3 151977631 151978209 -66058949 + MLT1G LTR MaLR 1 590 0 236 354 0 12 chr3 151978209 151978291 -66058867 - MIR SINE MIR -135 127 47 2021 100 10 10 chr3 151979763 151980052 -66057106 - AluSq SINE Alu -14 299 11 564 274 57 6 chr3 151980755 151980912 -66056246 + MIR SINE MIR 36 200 -62 221 310 147 9 chr3 151981966 151982082 -66055076 + MER5A DNA MER1_type 56 187 -2 414 212 53 26 chr3 151982563 151982676 -66054482 + MER103 DNA DNA 8 123 -43 389 265 11 44 chr3 151982954 151983135 -66054023 + (CACCAT)n Simple_repeat Simple_repeat 5 179 0 248 376 0 20 chr3 151983162 151983311 -66053847 + (CCA)n Simple_repeat Simple_repeat 3 148 0 810 321 13 0 chr3 151983907 151984131 -66053027 - MIR SINE MIR -33 229 3 240 286 66 33 chr3 151985221 151985312 -66051846 + MIR SINE MIR 119 212 -50 256 176 68 0 chr3 151985389 151985463 -66051695 + Charlie4 DNA MER1_type 1791 1869 -92 6940 182 57 72 chr3 151985464 151987301 -66049857 - L1MC4a LINE L1 -11 7797 5989 237 250 52 52 chr3 151987800 151987896 -66049262 + MIR SINE MIR 95 190 -72 5665 187 35 6 chr3 151988003 151989106 -66048052 - L1MD2 LINE L1 0 6359 5228 1968 139 31 0 chr3 151989114 151989402 -66047756 - 7SLRNA srpRNA srpRNA -10 310 14 444 303 36 34 chr3 151990803 151990991 -66046167 - MIR SINE MIR -48 214 27 2347 94 3 0 chr3 151991342 151991640 -66045518 + AluSp SINE Alu 1 299 -14 367 380 120 0 chr3 151991645 151991919 -66045239 + L3 LINE CR1 199 505 -1072 8005 24 1 2 chr3 151992209 151993587 -66043571 + L1PA4 LINE L1 4760 6136 -19 4506 199 57 76 chr3 151993687 151994979 -66042179 - L1MC4 LINE L1 -416 7626 6359 187 338 106 45 chr3 151996132 151996330 -66040828 + L2 LINE L2 2882 3091 -181 995 197 89 32 chr3 151996528 151996789 -66040369 + MIR SINE MIR 3 257 -5 321 267 246 31 chr3 151998243 151998438 -66038720 + L2 LINE L2 3029 3265 -7 766 196 54 58 chr3 151999078 151999338 -66037820 - L1MC5 LINE L1 -245 7716 7458 577 217 8 8 chr3 151999429 151999558 -66037600 - L1MA10 LINE L1 -14 6320 6192 * 1475 201 69 4 chr3 151999544 151999898 -66037260 - L1ME1 LINE L1 -180 5982 5608 228 139 0 0 chr3 151999919 151999955 -66037203 - AluJo SINE Alu -9 293 258 546 128 0 0 chr3 151999957 152000035 -66037123 - Tigger3(Golem) DNA MER2_type -745 2284 2207 1188 204 62 13 chr3 152000043 152000269 -66036889 - AluJo SINE Alu -63 249 13 1465 199 38 0 chr3 152000280 152000571 -66036587 - L1ME1 LINE L1 -563 5603 5302 1918 161 17 0 chr3 152000572 152000870 -66036288 - AluSx SINE Alu -9 303 1 4430 128 18 7 chr3 152000870 152001588 -66035570 - L1MA4A LINE L1 -231 6072 5347 5727 123 47 35 chr3 152001588 152001652 -66035506 - Tigger3b DNA MER2_type -2021 1007 945 2117 124 0 7 chr3 152001652 152001942 -66035216 + AluSg SINE Alu 2 289 -21 518 18 35 53 chr3 152001951 152002065 -66035093 + (TA)n Simple_repeat Simple_repeat 1 112 0 5727 123 47 35 chr3 152002065 152002774 -66034384 - Tigger3b DNA MER2_type -2090 938 239 189 107 0 0 chr3 152002774 152002802 -66034356 + (ATTG)n Simple_repeat Simple_repeat 4 31 0 2050 110 15 0 chr3 152002802 152003075 -66034083 - AluSg1 SINE Alu -32 277 1 5727 123 47 35 chr3 152003075 152003284 -66033874 - Tigger3b DNA MER2_type -2788 240 1 4391 238 83 15 chr3 152003284 152003650 -66033508 - L1MEc LINE L1 -3017 3198 2858 2277 96 0 3 chr3 152003650 152003942 -66033216 - AluSx SINE Alu -16 296 6 4391 238 83 15 chr3 152003942 152005801 -66031357 - L1MEc LINE L1 -3357 2858 847 206 237 17 0 chr3 152006107 152006166 -66030992 + (CATA)n Simple_repeat Simple_repeat 2 61 0 216 277 0 0 chr3 152007221 152007268 -66029890 - MIR SINE MIR -195 67 21 1474 199 11 46 chr3 152007410 152007757 -66029401 - L1MC4 LINE L1 0 8042 7708 635 244 128 6 chr3 152007910 152008090 -66029068 + MIR SINE MIR 48 249 -13 1250 234 109 66 chr3 152008189 152008725 -66028433 + MLT1F1 LTR MaLR 1 593 0 368 209 45 36 chr3 152009123 152009233 -66027925 - MLT1J LTR MaLR 0 511 401 341 247 26 4 chr3 152009360 152009479 -66027679 - MLT1J LTR MaLR -310 178 63 245 350 57 8 chr3 152009693 152009816 -66027342 + L2 LINE L2 3124 3252 -20 752 139 0 17 chr3 152011141 152011256 -66025902 - FRAM SINE Alu -5 171 59 293 284 14 0 chr3 152011274 152011348 -66025810 + L2 LINE L2 3193 3267 -5 183 268 0 84 chr3 152011413 152011484 -66025674 + L3 LINE CR1 1396 1460 -117 379 330 93 26 chr3 152011784 152011978 -66025180 - L2 LINE L2 0 3272 3066 1681 193 122 53 chr3 152011983 152012369 -66024789 + MLT1D LTR MaLR 7 432 -73 2322 107 3 0 chr3 152012369 152012678 -66024480 - AluSp SINE Alu -3 310 1 1681 193 122 53 chr3 152012678 152012758 -66024400 + MLT1D LTR MaLR 432 505 0 404 305 81 33 chr3 152012844 152013116 -66024042 - L2 LINE L2 -341 2973 2689 202 317 110 0 chr3 152014053 152014135 -66023023 - MIR SINE MIR -14 248 158 275 321 93 0 chr3 152014167 152014307 -66022851 + MIR SINE MIR 104 256 -6 267 358 53 11 chr3 152014814 152014909 -66022249 - L2 LINE L2 -40 3232 3134 1180 281 118 15 chr3 152014925 152015384 -66021774 + MLT1J LTR MaLR 4 509 -2 1041 268 99 34 chr3 152016328 152016712 -66020446 - MLT1I LTR MaLR 0 409 1 181 384 77 11 chr3 152017792 152018157 -66019001 + L2 LINE L2 2513 2901 -413 293 314 63 98 chr3 152018216 152018471 -66018687 + L2 LINE L2 3027 3272 0 2171 223 25 19 chr3 152018504 152019019 -66018139 + LTR40a LTR ERVL 2 519 0 29 28 0 0 chr3 152020891 152020927 -66016231 + AT_rich Low_complexity Low_complexity 1 36 0 653 286 36 40 chr3 152021110 152021362 -66015796 + MLT1L LTR MaLR 155 405 -210 277 323 0 0 chr3 152021392 152021488 -66015670 + MLT1L LTR MaLR 512 607 -8 4768 140 48 24 chr3 152022212 152023085 -66014073 + L1MB3 LINE L1 5286 6179 -4 309 260 31 10 chr3 152023303 152023399 -66013759 + MLT1K LTR MaLR 489 586 -2 617 256 183 28 chr3 152023411 152023766 -66013392 + HAL1 LINE L1 1404 1813 -694 264 285 48 55 chr3 152024059 152024120 -66013038 + HAL1b LINE L1 748 808 -540 2349 107 0 0 chr3 152024120 152024420 -66012738 + AluSg SINE Alu 1 300 -10 264 285 48 55 chr3 152024420 152024523 -66012635 + HAL1b LINE L1 808 911 -437 882 243 58 88 chr3 152024566 152025038 -66012120 - MLT1J LTR MaLR -44 467 19 1900 214 79 11 chr3 152026624 152027092 -66010066 + MLT1D LTR MaLR 6 505 0 1923 142 67 22 chr3 152027232 152027591 -66009567 + THE1C LTR MaLR 1 375 0 410 275 130 10 chr3 152027876 152028083 -66009075 + L1MC4a LINE L1 5679 5910 -1898 255 31 0 0 chr3 152028521 152028553 -66008605 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 362 287 0 85 chr3 152029654 152029783 -66007375 - MIR3 SINE MIR -47 161 44 220 363 103 7 chr3 152029963 152030109 -66007049 - L3b LINE CR1 -2 1581 1422 25 0 0 0 chr3 152030179 152030204 -66006954 + AT_rich Low_complexity Low_complexity 1 25 0 374 246 28 49 chr3 152031585 152031727 -66005431 - MIR SINE MIR -101 161 23 207 324 45 36 chr3 152033048 152033159 -66003999 - MIR3 SINE MIR -15 193 82 399 276 103 77 chr3 152033999 152034387 -66002771 - L2 LINE L2 0 3272 2875 1555 175 4 18 chr3 152035730 152036004 -66001154 + AluJo SINE Alu 27 296 -16 240 292 53 9 chr3 152037717 152037830 -65999328 - L1MC4 LINE L1 -2 8040 7923 1510 232 36 23 chr3 152037987 152038375 -65998783 - L1ME2 LINE L1 -24 6140 5748 521 299 33 9 chr3 152038654 152038865 -65998293 - MER113 DNA MER1_type? -304 217 2 626 241 24 12 chr3 152038871 152039041 -65998117 - MER5B DNA MER1_type 0 178 7 711 211 40 23 chr3 152039050 152039225 -65997933 + MER5A DNA MER1_type 12 189 0 322 203 122 122 chr3 152040556 152040586 -65996572 - L1MC5 LINE L1 -48 7913 7884 1434 217 13 10 chr3 152040586 152040885 -65996273 + AluJo SINE Alu 1 300 -12 322 203 122 122 chr3 152040885 152041149 -65996009 - L1MC5 LINE L1 -76 7885 7619 605 209 107 23 chr3 152041445 152041660 -65995498 + MIR SINE MIR 19 251 -11 2131 174 77 43 chr3 152042175 152042658 -65994500 - MLT1D LTR MaLR 0 505 7 448 200 60 50 chr3 152042709 152042871 -65994287 + MIR3 SINE MIR 18 182 -26 521 270 150 26 chr3 152043710 152043943 -65993215 + MLT1K LTR MaLR 322 583 -5 606 251 123 12 chr3 152044790 152044925 -65992233 + L1MC4a LINE L1 5673 5792 -2016 306 0 0 0 chr3 152044925 152044959 -65992199 + (GA)n Simple_repeat Simple_repeat 1 34 0 606 251 123 12 chr3 152044959 152045074 -65992084 + L1MC4a LINE L1 5792 5951 -1857 900 274 160 6 chr3 152045305 152045648 -65991510 + MLT1G1 LTR MaLR 1 396 -199 5757 131 35 36 chr3 152045659 152046767 -65990391 - L1MA4 LINE L1 0 6300 5193 296 213 101 72 chr3 152046771 152046920 -65990238 + MLT1H LTR MaLR 353 515 -34 317 349 125 16 chr3 152047090 152047537 -65989621 - L2 LINE L2 -968 2346 1851 2010 139 10 23 chr3 152048392 152048702 -65988456 + AluJb SINE Alu 3 308 -4 650 284 104 3 chr3 152049413 152049740 -65987418 + LTR16C LTR ERVL 4 456 -35 218 193 18 35 chr3 152052889 152052946 -65984212 + L2 LINE L2 3197 3252 -61 227 222 0 0 chr3 152052969 152053014 -65984144 + GA-rich Low_complexity Low_complexity 3 47 0 324 282 39 64 chr3 152054019 152054175 -65982983 - MIR SINE MIR 0 262 111 270 136 0 0 chr3 152054331 152054375 -65982783 + (CA)n Simple_repeat Simple_repeat 2 45 0 281 304 65 0 chr3 152054956 152055048 -65982110 - MIR SINE MIR -29 233 136 218 221 183 10 chr3 152055825 152055929 -65981229 + L2 LINE L2 3146 3267 -5 213 203 43 29 chr3 152055968 152056037 -65981121 - MIR3 SINE MIR -41 167 98 390 198 140 57 chr3 152056422 152056579 -65980579 - MLT1K LTR MaLR -36 552 383 32 0 0 0 chr3 152057261 152057293 -65979865 + AT_rich Low_complexity Low_complexity 1 32 0 2175 209 65 49 chr3 152057295 152058039 -65979119 - L1MD3 LINE L1 -1 7994 7181 1927 151 17 0 chr3 152058231 152058523 -65978635 + AluSg SINE Alu 5 301 -9 1417 199 38 3 chr3 152058524 152058816 -65978342 + L1ME1 LINE L1 5302 5603 -563 1195 204 62 13 chr3 152058827 152059053 -65978105 + AluJo SINE Alu 13 249 -63 548 128 0 0 chr3 152059061 152059139 -65978019 + Tigger3(Golem) DNA MER2_type 2207 2284 -745 226 139 0 0 chr3 152059141 152059177 -65977981 + AluJo SINE Alu 258 293 -9 1314 211 69 14 chr3 152059198 152059555 -65977603 + L1ME1 LINE L1 5608 5982 -180 568 217 8 8 chr3 152059541 152059670 -65977488 + L1MA10 LINE L1 6192 6320 -14 * 182 343 51 15 chr3 152060036 152060173 -65976985 - MIR SINE MIR -119 143 2 573 274 25 20 chr3 152060374 152060578 -65976580 - MIR SINE MIR -52 210 6 258 304 70 0 chr3 152060617 152060732 -65976426 - MIR SINE MIR -14 248 126 246 190 35 0 chr3 152060939 152060997 -65976161 + L2 LINE L2 3248 3307 -6 601 112 41 0 chr3 152061512 152061610 -65975548 + AluSg/x SINE Alu 209 310 0 2232 129 0 0 chr3 152061749 152062052 -65975106 + AluSq SINE Alu 1 303 -10 837 249 54 105 chr3 152062198 152062676 -65974482 - MLT1J LTR MaLR -44 467 14 207 162 0 0 chr3 152064876 152064913 -65972245 + A-rich Low_complexity Low_complexity 1 37 0 8043 86 25 9 chr3 152065148 152066340 -65970818 - L1P LINE L1 -4907 1239 29 337 269 99 12 chr3 152068609 152068780 -65968378 - MIR SINE MIR 0 262 77 225 65 0 0 chr3 152069068 152069099 -65968059 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 2437 147 71 27 chr3 152070234 152070682 -65966476 + Tigger3(Golem) DNA MER2_type 2259 2686 -342 518 18 35 53 chr3 152070682 152070796 -65966362 + (TA)n Simple_repeat Simple_repeat 1 112 0 2135 124 0 7 chr3 152070805 152071095 -65966063 - AluSg SINE Alu -21 289 2 2437 147 71 27 chr3 152071095 152071159 -65965999 + Tigger3(Golem) DNA MER2_type 2693 2804 -224 3753 138 49 7 chr3 152071159 152071856 -65965302 + L1MA4A LINE L1 5347 6072 -231 29 0 0 0 chr3 152072463 152072492 -65964666 + AT_rich Low_complexity Low_complexity 1 29 0 333 234 179 11 chr3 152072724 152072908 -65964250 - L1MC5 LINE L1 -262 7699 7485 23 0 0 0 chr3 152072914 152072937 -65964221 + AT_rich Low_complexity Low_complexity 1 23 0 1452 261 86 20 chr3 152072940 152073043 -65964115 - L1MC5 LINE L1 -1872 5936 5841 2737 39 0 3 chr3 152073043 152073353 -65963805 - AluY SINE Alu -2 309 1 1452 261 86 20 chr3 152073353 152073739 -65963419 - L1MC5 LINE L1 -1967 5841 5415 283 330 0 10 chr3 152075690 152075787 -65961371 + CT-rich Low_complexity Low_complexity 1 96 0 463 295 18 0 chr3 152075880 152075992 -65961166 - MER81 DNA DNA 0 114 1 235 241 0 0 chr3 152076182 152076236 -65960922 + Charlie1 DNA MER1_type 53 106 -2655 * 434 240 40 60 chr3 152076230 152076430 -65960728 + Charlie1 DNA MER1_type 2566 2761 0 204 326 12 0 chr3 152076853 152076939 -65960219 + MIR SINE MIR 66 152 -110 626 226 16 39 chr3 152078231 152078459 -65958699 - L1ME1 LINE L1 -254 5908 5689 641 251 113 25 chr3 152078466 152078741 -65958417 - L1MC4 LINE L1 -219 7823 7525 295 284 11 0 chr3 152078815 152078903 -65958255 - MER94 DNA DNA -37 97 9 1180 281 118 15 chr3 152079762 152080221 -65956937 - MLT1J LTR MaLR -2 509 4 267 358 53 11 chr3 152080237 152080332 -65956826 + L2 LINE L2 3134 3232 -40 277 323 0 0 chr3 152081077 152081173 -65955985 - MLT1L LTR MaLR -8 607 512 653 286 36 40 chr3 152081203 152081455 -65955703 - MLT1L LTR MaLR -210 405 155 29 28 0 0 chr3 152081638 152081674 -65955484 + AT_rich Low_complexity Low_complexity 1 36 0 209 125 18 71 chr3 152132336 152132448 -65904710 + (TTA)n Simple_repeat Simple_repeat 1 106 0 315 82 0 62 chr3 152132633 152132730 -65904428 + (TAA)n Simple_repeat Simple_repeat 1 91 0 2064 126 0 3 chr3 152133151 152133452 -65903706 + AluSx SINE Alu 1 300 -12 1256 195 18 5 chr3 152134240 152134461 -65902697 + MER58A DNA MER1_type 1 224 0 419 236 71 31 chr3 152134690 152134817 -65902341 - MER103 DNA DNA 0 166 35 993 241 152 15 chr3 152136054 152136559 -65900599 + L1ME4a LINE L1 5529 6115 -6 2005 127 3 0 chr3 152136593 152136884 -65900274 + AluSc SINE Alu 1 292 -17 262 272 103 77 chr3 152136987 152137143 -65900015 - MIR3 SINE MIR -52 156 9 395 311 26 20 chr3 152137643 152137794 -65899364 + MIR SINE MIR 20 171 -91 320 287 23 23 chr3 152138329 152138482 -65898676 + MIR SINE MIR 1 156 -64 856 222 17 6 chr3 152138573 152138749 -65898409 + MER63A DNA MER1_type 4 181 -29 299 328 56 0 chr3 152138791 152138916 -65898242 - MIR SINE MIR -111 151 20 646 301 46 14 chr3 152139938 152140154 -65897004 - MIR SINE MIR -35 227 5 345 250 0 92 chr3 152140612 152140657 -65896501 + L2 LINE L2 2562 2610 -704 1088 151 11 17 chr3 152140657 152140836 -65896322 - MER45A DNA AcHobo 0 178 1 345 250 0 92 chr3 152140836 152140942 -65896216 + L2 LINE L2 2610 2699 -615 785 242 9 53 chr3 152141031 152141258 -65895900 - MER20 DNA MER1_type -2 217 1 883 292 62 33 chr3 152141631 152142128 -65895030 + MLT1K LTR MaLR 2 581 -7 469 304 16 87 chr3 152142699 152142952 -65894206 - L2 LINE L2 -95 3177 2943 633 270 81 46 chr3 152143023 152143308 -65893850 + L2 LINE L2 3016 3310 -3 227 175 0 0 chr3 152143311 152143351 -65893807 + (TG)n Simple_repeat Simple_repeat 1 40 0 280 343 75 50 chr3 152143356 152143431 -65893727 - L2 LINE L2 -469 2845 2773 2434 164 34 0 chr3 152143431 152143845 -65893313 + MSTA LTR MaLR 1 428 0 280 343 75 50 chr3 152143845 152143859 -65893299 - L2 LINE L2 -541 2773 2761 1638 73 9 14 chr3 152143859 152144077 -65893081 + L1PA8 LINE L1 5949 6165 -7 280 343 75 50 chr3 152144077 152144386 -65892772 - L2 LINE L2 -553 2761 2436 261 296 23 0 chr3 152144874 152144962 -65892196 + (TA)n Simple_repeat Simple_repeat 2 91 0 1702 63 0 38 chr3 152144998 152145235 -65891923 - AluY SINE Alu -83 228 1 723 286 88 11 chr3 152145235 152145508 -65891650 - L1MC4a LINE L1 -1949 5859 5566 602 318 15 60 chr3 152146356 152146756 -65890402 - L2 LINE L2 -87 3185 2804 306 239 14 0 chr3 152147637 152147708 -65889450 + MIR SINE MIR 188 259 -3 1569 204 140 89 chr3 152147742 152148306 -65888852 + MLT1E LTR MaLR 1 593 0 196 333 61 18 chr3 152148311 152148425 -65888733 - L2 LINE L2 0 3272 3154 233 205 6 143 chr3 152148451 152148612 -65888546 - L2 LINE L2 -271 3001 2863 1746 204 35 38 chr3 152149903 152149977 -65887181 + MLT1B LTR MaLR 8 81 -309 1997 140 0 16 chr3 152149977 152150292 -65886866 - AluSq SINE Alu -3 310 1 1746 204 35 38 chr3 152150292 152150590 -65886568 + MLT1B LTR MaLR 81 379 -11 271 237 35 0 chr3 152150595 152150692 -65886466 + MLT1E LTR MaLR 105 187 -406 210 158 0 26 chr3 152150695 152150733 -65886425 + GA-rich Low_complexity Low_complexity 2 38 0 1989 146 0 0 chr3 152151644 152151952 -65885206 + AluSg SINE Alu 1 308 -2 2295 161 0 3 chr3 152152657 152153024 -65884134 + MER47A DNA MER2_type 1 366 0 2098 108 0 14 chr3 152154033 152154330 -65882828 + AluSc SINE Alu 3 295 -14 182 294 54 11 chr3 152154426 152154518 -65882640 + L2 LINE L2 3007 3102 -170 925 264 159 20 chr3 152155442 152155882 -65881276 - MLT1D LTR MaLR 0 505 5 355 254 107 16 chr3 152158018 152158140 -65879018 - L1ME4a LINE L1 -4 6117 5985 1660 153 48 17 chr3 152158152 152158447 -65878711 - AluJb SINE Alu 0 312 9 202 205 0 0 chr3 152158563 152158602 -65878556 + (CA)n Simple_repeat Simple_repeat 2 40 0 381 273 125 74 chr3 152158707 152158908 -65878250 - L1ME4a LINE L1 -362 5800 5584 192 394 11 0 chr3 152159045 152159139 -65878019 + MIR SINE MIR 162 256 -6 454 297 87 27 chr3 152159413 152159632 -65877526 + MIR SINE MIR 28 259 -3 454 269 84 8 chr3 152159644 152159763 -65877395 + L2 LINE L2 3185 3312 -1 211 342 13 13 chr3 152160316 152160395 -65876763 - L2 LINE L2 -8 3264 3186 2077 159 67 77 chr3 152160732 152161242 -65875916 + MLT1D LTR MaLR 1 505 0 2687 271 136 24 chr3 152161620 152162982 -65874176 + L2 LINE L2 1817 3311 -2 200 343 22 44 chr3 152162986 152163123 -65874035 - MIR SINE MIR 0 262 129 2003 92 14 7 chr3 152163430 152163712 -65873446 - AluSq SINE Alu -29 284 1 212 308 51 51 chr3 152163714 152163870 -65873288 - L2 LINE L2 -940 2374 2219 2640 175 62 12 chr3 152165190 152165676 -65871482 - MLT1F LTR MaLR -2 540 31 235 373 134 10 chr3 152165896 152166306 -65870852 - L2 LINE L2 -611 2703 2243 543 248 168 0 chr3 152166528 152166689 -65870469 - MIR SINE MIR -16 246 59 569 174 98 8 chr3 152167148 152167280 -65869878 - MLT1H LTR MaLR 0 549 406 319 179 0 30 chr3 152167458 152167525 -65869633 - MLT1H LTR MaLR -381 168 104 547 308 157 0 chr3 152168240 152168526 -65868632 - MER102b DNA MER1_type -10 331 1 242 253 267 0 chr3 152168693 152168768 -65868390 - L2 LINE L2 -1 3271 3177 259 269 149 39 chr3 152169110 152169318 -65867840 - L2 LINE L2 -568 2746 2516 487 269 147 5 chr3 152169669 152169866 -65867292 - MIR SINE MIR -26 236 12 344 296 43 12 chr3 152171474 152171636 -65865522 - MIR SINE MIR -8 254 88 209 317 72 48 chr3 152172898 152173065 -65864093 + L2 LINE L2 2985 3155 -117 358 311 105 35 chr3 152173167 152173395 -65863763 - L3 LINE CR1 -103 1474 1231 4967 31 0 0 chr3 152173587 152174159 -65862999 - L1PA2 LINE L1 -1 6154 5583 19241 33 0 0 chr3 152174159 152176608 -65860550 + L1PA2 LINE L1 3122 5570 -584 301 330 0 0 chr3 152176768 152176859 -65860299 + L1MC4 LINE L1 6613 6703 -1339 247 224 0 82 chr3 152176867 152176965 -65860193 - L1MC4 LINE L1 -1339 6703 6614 203 207 35 0 chr3 152176965 152177023 -65860135 + (CATA)n Simple_repeat Simple_repeat 4 63 0 257 287 46 0 chr3 152177026 152177113 -65860045 + L1MC4 LINE L1 6613 6703 -1339 243 253 23 0 chr3 152177116 152177203 -65859955 + L1MC4 LINE L1 6615 6703 -1339 204 125 0 0 chr3 152177203 152177235 -65859923 + (TA)n Simple_repeat Simple_repeat 2 33 0 389 276 0 0 chr3 152177279 152177377 -65859781 + L2 LINE L2 3215 3312 -1 192 268 183 0 chr3 152177661 152177743 -65859415 - MIR SINE MIR 0 262 166 217 232 71 0 chr3 152177804 152177860 -65859298 + L2 LINE L2 3188 3247 -66 225 342 0 0 chr3 152178015 152178094 -65859064 + (TA)n Simple_repeat Simple_repeat 1 79 0 1613 194 44 5 chr3 152178194 152178561 -65858597 - L1ME1 LINE L1 -6 6160 5768 485 159 23 0 chr3 152178532 152178620 -65858538 - L1ME1 LINE L1 -2534 3612 3523 * 3854 174 8 21 chr3 152179999 152180667 -65856491 + L1MB3 LINE L1 5479 6139 -44 2350 78 0 33 chr3 152180667 152180974 -65856184 + AluY SINE Alu 1 297 -14 3854 174 8 21 chr3 152180974 152181017 -65856141 + L1MB3 LINE L1 6139 6181 -2 377 206 84 47 chr3 152181609 152181716 -65855442 + MLT1K LTR MaLR 470 580 -8 1403 164 21 127 chr3 152182223 152182650 -65854508 + L1MC5 LINE L1 6616 6997 -964 996 258 162 48 chr3 152182662 152182863 -65854295 + MLT1H1 LTR MaLR 13 190 -365 2300 104 0 0 chr3 152182863 152183160 -65853998 + AluY SINE Alu 2 298 -13 996 258 162 48 chr3 152183160 152183439 -65853719 + MLT1H1 LTR MaLR 190 548 -7 1394 253 38 36 chr3 152183460 152183477 -65853681 + L1MC5 LINE L1 7287 7302 -659 1691 183 0 35 chr3 152183477 152183788 -65853370 + AluJb SINE Alu 1 300 -12 1394 253 38 36 chr3 152183788 152184010 -65853148 + L1MC5 LINE L1 7302 7522 -439 2235 74 20 17 chr3 152184010 152184306 -65852852 + AluY SINE Alu 2 298 -13 1394 253 38 36 chr3 152184306 152184647 -65852511 + L1MC5 LINE L1 7522 7869 -92 1091 231 27 51 chr3 152185445 152185739 -65851419 + L1MC5 LINE L1 6616 6902 -1059 237 244 0 39 chr3 152185886 152185964 -65851194 + LTR67 LTR ERVL 466 540 -17 * 238 219 31 16 chr3 152185905 152185969 -65851189 + MLT1K LTR MaLR 511 575 -13 3547 111 51 13 chr3 152187642 152188176 -65848982 - MER41A LTR ERV1 0 554 1 374 214 71 29 chr3 152188301 152188441 -65848717 + MIR SINE MIR 117 262 0 1298 299 26 52 chr3 152188480 152188982 -65848176 - LTR33A LTR ERVL -16 507 19 883 296 35 53 chr3 152189603 152190318 -65846840 - L1M4 LINE L1 -1233 4913 4212 203 217 0 117 chr3 152190512 152190572 -65846586 + L2 LINE L2 3214 3266 -6 318 106 0 0 chr3 152190957 152191004 -65846154 + (CA)n Simple_repeat Simple_repeat 1 47 0 12015 96 2 6 chr3 152191499 152193149 -65844009 - L1PA5 LINE L1 -3844 2302 660 24629 52 0 0 chr3 152193150 152196996 -65840162 + L1PA5 LINE L1 2295 6154 0 186 296 70 14 chr3 152197118 152197189 -65839969 + L2 LINE L2 3184 3258 -14 1355 249 40 11 chr3 152198238 152198587 -65838571 - MLT1C LTR MaLR 0 467 109 699 218 0 8 chr3 152198630 152198763 -65838395 - AluJo SINE Alu -178 134 3 332 155 169 0 chr3 152198771 152198842 -65838316 - MLT1C LTR MaLR -379 88 6 468 309 140 28 chr3 152199228 152199986 -65837172 - L2 LINE L2 -54 3259 2399 2670 132 31 21 chr3 152200346 152200770 -65836388 + MSTC LTR MaLR 1 428 0 4122 37 8 0 chr3 152201284 152201768 -65835390 - L1PA4 LINE L1 0 6155 5668 270 345 167 0 chr3 152202950 152203124 -65834034 - MIR SINE MIR -21 241 39 793 184 42 6 chr3 152203300 152203468 -65833690 + MIR SINE MIR 88 261 -1 253 369 7 7 chr3 152204974 152205115 -65832043 - L2 LINE L2 -236 3036 2896 463 274 51 75 chr3 152205743 152206035 -65831123 - L2 LINE L2 0 3313 3029 405 264 27 0 chr3 152206162 152206272 -65830886 + MER81 DNA DNA 1 113 -1 555 314 100 49 chr3 152206825 152207315 -65829843 + L2 LINE L2 2325 2839 -475 201 182 106 15 chr3 152207443 152207509 -65829649 + L2 LINE L2 3007 3078 -194 455 279 54 7 chr3 152208238 152208385 -65828773 + MIR SINE MIR 31 184 -78 504 292 31 12 chr3 152208424 152208585 -65828573 - MIR3 SINE MIR -7 201 38 527 243 51 73 chr3 152208663 152208840 -65828318 + MLT1I LTR MaLR 233 405 -4 402 220 73 0 chr3 152209670 152209779 -65827379 + L2 LINE L2 3194 3310 -3 206 105 26 0 chr3 152209951 152209989 -65827169 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 31 0 0 0 chr3 152212234 152212265 -65824893 + AT_rich Low_complexity Low_complexity 1 31 0 473 223 11 0 chr3 152213013 152213107 -65824051 + MER81 DNA DNA 20 114 0 2770 151 0 53 chr3 152214625 152215134 -65822024 - L1PA16 LINE L1 0 6166 5685 1727 148 0 0 chr3 152215134 152215397 -65821761 + L1PA16 LINE L1 5412 5674 -492 423 280 63 7 chr3 152215398 152215541 -65821617 + MIR SINE MIR 56 206 -56 234 0 0 0 chr3 152216228 152216254 -65820904 + (TTG)n Simple_repeat Simple_repeat 2 27 0 282 335 124 41 chr3 152216358 152216624 -65820534 - L2 LINE L2 -89 3183 2896 275 329 20 20 chr3 152216697 152216846 -65820312 - L2 LINE L2 -499 2815 2667 323 280 33 98 chr3 152217044 152217131 -65820027 - L1ME LINE L1 -5329 1530 1439 7635 118 14 5 chr3 152217131 152219100 -65818058 - L1PA8A LINE L1 0 6131 4151 323 280 33 98 chr3 152219100 152219226 -65817932 - L1ME LINE L1 -5420 1439 1331 210 175 0 25 chr3 152219285 152219325 -65817833 + CT-rich Low_complexity Low_complexity 3 41 0 321 369 28 0 chr3 152220417 152220558 -65816600 - L1ME LINE L1 -5925 1022 878 2031 159 35 13 chr3 152221532 152221909 -65815249 + MLT1B LTR MaLR 2 386 -4 191 163 0 23 chr3 152221909 152221952 -65815206 + GA-rich Low_complexity Low_complexity 3 44 0 510 312 50 23 chr3 152222460 152222678 -65814480 + MIR SINE MIR 28 251 -11 222 344 0 0 chr3 152223703 152223767 -65813391 + L2 LINE L2 3208 3271 -1 272 237 149 61 chr3 152223818 152223932 -65813226 - MIR SINE MIR -3 259 136 11440 200 24 15 chr3 152223951 152224621 -65812537 - L1PA16 LINE L1 -9 6860 6197 1634 186 24 17 chr3 152224621 152224917 -65812241 - AluJb SINE Alu -14 298 1 11440 200 24 15 chr3 152224917 152226009 -65811149 - L1PA16 LINE L1 -672 6197 5116 315 0 0 0 chr3 152226009 152226044 -65811114 + (TG)n Simple_repeat Simple_repeat 2 36 0 11440 200 24 15 chr3 152226044 152228250 -65808908 - L1PA16 LINE L1 -1753 5116 2858 10143 179 16 19 chr3 152228250 152228461 -65808697 - L1PA16 LINE L1 -4226 2623 2413 2327 97 7 0 chr3 152228461 152228769 -65808389 + AluY SINE Alu 1 310 -1 10143 179 16 19 chr3 152228769 152230790 -65806368 - L1PA16 LINE L1 -4436 2413 714 390 235 129 23 chr3 152230790 152230854 -65806304 - MIR SINE MIR -113 149 93 882 141 38 16 chr3 152230854 152231038 -65806120 - MER53 DNA DNA 0 189 2 390 235 129 23 chr3 152231038 152231105 -65806053 - MIR SINE MIR -169 93 4 290 287 127 26 chr3 152231175 152231711 -65805447 - L1M4 LINE L1 -2682 3464 2875 408 201 13 31 chr3 152231937 152232064 -65805094 - MLT1J1 LTR MaLR -296 150 24 461 309 54 64 chr3 152232120 152232509 -65804649 - L1M4 LINE L1 -3460 2686 2302 196 303 226 14 chr3 152233273 152233706 -65803452 + L2 LINE L2 555 1079 -2235 1361 190 94 43 chr3 152233712 152234147 -65803011 + MLT1C LTR MaLR 1 467 0 220 330 11 44 chr3 152234242 152234333 -65802825 + L2 LINE L2 2562 2649 -665 620 261 92 37 chr3 152234575 152234870 -65802288 - MLT1J1 LTR MaLR -135 311 1 206 347 113 50 chr3 152234871 152235093 -65802065 + L2 LINE L2 2825 3060 -212 218 222 333 0 chr3 152235148 152235220 -65801938 + L2 LINE L2 3171 3266 -6 285 278 42 35 chr3 152235444 152235588 -65801570 - HAL1 LINE L1 -962 1545 1401 2464 238 76 60 chr3 152235786 152237264 -65799894 - L1MC5 LINE L1 -385 7576 6091 383 270 98 0 chr3 152237289 152237452 -65799706 - L1MC5 LINE L1 -1841 5967 5789 180 245 0 0 chr3 152238818 152238871 -65798287 + (CATATA)n Simple_repeat Simple_repeat 4 56 0 463 331 6 0 chr3 152238930 152239108 -65798050 + (CA)n Simple_repeat Simple_repeat 1 179 0 1021 159 112 23 chr3 152240145 152240403 -65796755 + L1MCa LINE L1 1280 1560 -4866 940 163 181 4 chr3 152240412 152240688 -65796470 + L1MA9 LINE L1 5950 6274 -38 942 75 2 26 chr3 152240705 152240860 -65796298 + L1MCa LINE L1 1549 1790 -4636 * 3954 259 58 44 chr3 152240855 152241258 -65795900 - L1 LINE L1 -2663 3719 3323 1594 103 31 0 chr3 152241258 152241481 -65795677 + MER30 DNA MER1_type 1 230 0 3954 259 58 44 chr3 152241481 152243313 -65793845 - L1 LINE L1 -3059 3323 1463 628 200 21 0 chr3 152243329 152243474 -65793684 + L1 LINE L1 3545 3692 -2454 834 210 19 0 chr3 152243476 152243638 -65793520 + AluJo SINE Alu 1 165 -147 1264 169 0 8 chr3 152243643 152243880 -65793278 - L1 LINE L1 -2123 4023 3789 696 214 0 0 chr3 152244050 152244190 -65792968 + AluJo SINE Alu 173 312 0 338 148 0 0 chr3 152244192 152244253 -65792905 + L1 LINE L1 3688 3748 -2398 295 123 0 35 chr3 152244255 152244312 -65792846 - MADE1 DNA Mariner 0 80 26 1695 163 17 74 chr3 152244327 152244733 -65792425 + L1 LINE L1 3727 4109 -2037 246 218 22 0 chr3 152244751 152244834 -65792324 - L1ME LINE L1 -626 5536 5452 1036 118 15 20 chr3 152244866 152245061 -65792097 - L1MA4 LINE L1 -16 6284 6091 1294 284 50 83 chr3 152245061 152245514 -65791644 + L1 LINE L1 4106 4572 -1574 1521 151 4 4 chr3 152245514 152245752 -65791406 + AluSg/x SINE Alu 71 308 -4 1294 284 50 83 chr3 152245752 152246016 -65791142 + L1 LINE L1 4572 4843 -1303 2033 149 3 10 chr3 152246016 152246325 -65790833 + AluSx SINE Alu 1 307 -5 1294 284 50 83 chr3 152246325 152246688 -65790470 + L1 LINE L1 4843 5118 -1028 201 290 30 69 chr3 152246708 152246839 -65790319 + MIR SINE MIR 99 224 -38 807 195 55 0 chr3 152246908 152247072 -65790086 - MER5B DNA MER1_type -5 173 1 188 319 0 88 chr3 152248135 152248226 -65788932 + L2 LINE L2 3174 3256 -16 232 279 153 27 chr3 152248283 152248394 -65788764 - L2 LINE L2 -12 3301 3177 187 278 257 5 chr3 152248523 152248710 -65788448 - L2 LINE L2 -337 2977 2744 2362 72 3 3 chr3 152248799 152249103 -65788055 - AluY SINE Alu -7 304 1 232 191 191 0 chr3 152249307 152249391 -65787767 - LTR16A1 LTR ERVL -294 163 64 31 0 0 0 chr3 152250870 152250901 -65786257 + GC_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr3 152251694 152251723 -65785435 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr3 152251747 152251779 -65785379 + AT_rich Low_complexity Low_complexity 1 32 0 39 22 0 0 chr3 152251796 152251842 -65785316 + AT_rich Low_complexity Low_complexity 1 46 0 2490 118 65 92 chr3 152252840 152253397 -65783761 + MER11A LTR ERVK 1 542 -724 221 324 98 10 chr3 152254359 152254461 -65782697 - L2 LINE L2 -20 3252 3142 2087 225 78 30 chr3 152255345 152256279 -65780879 - L1ME1 LINE L1 -5 6161 5070 356 268 24 41 chr3 152256817 152256940 -65780218 - MIR SINE MIR -93 169 49 321 365 43 22 chr3 152257153 152257311 -65779847 + MIR SINE MIR 5 159 -49 315 318 93 47 chr3 152257716 152257952 -65779206 + L1MEd LINE L1 849 1095 -5024 3897 184 48 26 chr3 152258035 152259121 -65778037 + L1MB8 LINE L1 5045 6161 -17 328 181 0 0 chr3 152259148 152259220 -65777938 - L1PA15 LINE L1 -9 6156 6085 758 127 158 6 chr3 152259221 152259379 -65777779 - L1PA15 LINE L1 -135 6030 5849 211 207 0 46 chr3 152259445 152259532 -65777626 + (TAA)n Simple_repeat Simple_repeat 2 84 0 369 292 68 48 chr3 152259772 152260022 -65777136 + L1MEd LINE L1 2193 2447 -3682 * 393 222 113 65 chr3 152260001 152260186 -65776972 + L1ME2 LINE L1 5746 5939 -208 311 353 124 21 chr3 152260383 152260624 -65776534 - L2 LINE L2 -8 3264 2999 189 312 0 26 chr3 152260896 152260973 -65776185 - L2 LINE L2 -575 2739 2665 257 159 0 14 chr3 152262785 152262854 -65774304 + GA-rich Low_complexity Low_complexity 1 68 0 1989 146 3 3 chr3 152262909 152263204 -65773954 + AluSx SINE Alu 1 295 -17 181 279 49 33 chr3 152263306 152263367 -65773791 - L3 LINE CR1 -16 1561 1500 362 276 16 47 chr3 152263652 152263779 -65773379 + MLT1K LTR MaLR 162 284 -304 382 291 46 15 chr3 152263823 152264019 -65773139 + L1M4b LINE L1 5 206 -6653 1063 184 13 6 chr3 152264117 152264388 -65772770 + L1MB8 LINE L1 5205 5479 -699 3583 133 22 5 chr3 152264398 152265198 -65771960 + L1PA12 LINE L1 4680 5491 -672 1252 92 6 23 chr3 152265200 152265374 -65771784 + AluY SINE Alu 98 268 -43 4260 84 9 66 chr3 152265375 152265534 -65771624 + L1PA12 LINE L1 5513 5680 -488 2200 117 0 0 chr3 152265534 152265824 -65771334 + AluSx SINE Alu 1 290 -22 4260 84 9 66 chr3 152265824 152266358 -65770800 + L1PA12 LINE L1 5680 6166 -2 1679 186 40 35 chr3 152266367 152266469 -65770689 + L1MB8 LINE L1 5493 5593 -591 2556 51 0 3 chr3 152266469 152266781 -65770377 + AluY SINE Alu 1 311 0 1679 186 40 35 chr3 152266781 152267081 -65770077 + L1MB8 LINE L1 5593 5897 -287 243 100 0 80 chr3 152267111 152267161 -65769997 + MADE1 DNA Mariner 35 80 0 784 266 27 8 chr3 152267164 152267423 -65769735 + L1MB8 LINE L1 5915 6178 0 329 178 44 44 chr3 152267425 152267515 -65769643 + L1MC/D LINE L1 5382 5471 -2337 677 228 14 7 chr3 152267631 152267776 -65769382 + FRAM SINE Alu 1 146 -30 207 0 0 0 chr3 152267779 152267802 -65769356 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 347 189 244 0 chr3 152267889 152267979 -65769179 - MER67D LTR ERV1 -32 482 371 36292 79 15 9 chr3 152267980 152274091 -65763067 - L1PA6 LINE L1 -1 6153 11 4020 82 2 1 chr3 152274106 152275016 -65762142 - L1P3 LINE L1 -483 5689 4779 * 4765 84 0 1 chr3 152275015 152275696 -65761462 + L1P LINE L1 4064 4743 -1403 529 311 87 19 chr3 152276081 152276403 -65760755 + MLT1I LTR MaLR 64 407 -2 264 308 33 0 chr3 152276876 152276967 -65760191 + L1MC4 LINE L1 6912 7005 -1037 22 35 0 0 chr3 152276974 152277003 -65760155 + AT_rich Low_complexity Low_complexity 1 29 0 1265 216 21 24 chr3 152277231 152277358 -65759800 + AluJo SINE Alu 5 131 -181 221 0 35 0 chr3 152277358 152277387 -65759771 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1265 216 21 24 chr3 152277387 152277550 -65759608 + AluJo SINE Alu 131 294 -18 185 65 32 0 chr3 152277550 152277581 -65759577 + (TAGA)n Simple_repeat Simple_repeat 1 32 0 761 239 80 84 chr3 152277581 152277725 -65759433 + L1MC5 LINE L1 7323 7466 -495 378 0 0 0 chr3 152277725 152277767 -65759391 + (CA)n Simple_repeat Simple_repeat 1 42 0 761 239 80 84 chr3 152277767 152278082 -65759076 + L1MC5 LINE L1 7466 7781 -180 366 23 0 0 chr3 152278082 152278125 -65759033 + (GGAA)n Simple_repeat Simple_repeat 2 44 0 1726 229 63 33 chr3 152278132 152278620 -65758538 - MLT1D LTR MaLR 0 505 3 761 239 80 84 chr3 152278620 152278748 -65758410 + L1MC5 LINE L1 7787 7917 -44 2466 158 22 5 chr3 152278777 152279194 -65757964 - MSTB LTR MaLR -2 424 1 581 184 33 7 chr3 152279329 152279481 -65757677 + CT-rich Low_complexity Low_complexity 3 158 0 4754 142 109 64 chr3 152279846 152280663 -65756495 + Tigger3b DNA MER2_type 17 904 -2124 209 33 33 0 chr3 152280663 152280693 -65756465 + (CTCA)n Simple_repeat Simple_repeat 1 31 0 4754 142 109 64 chr3 152280693 152281036 -65756122 + Tigger3b DNA MER2_type 904 1230 -1 329 204 68 10 chr3 152281085 152281200 -65755958 + HAL1b LINE L1 1243 1347 -1 311 288 119 31 chr3 152281442 152281521 -65755637 + L1MEc LINE L1 2038 2109 -4287 213 39 0 0 chr3 152281521 152281547 -65755611 + (TG)n Simple_repeat Simple_repeat 1 26 0 311 288 119 31 chr3 152281547 152281627 -65755531 + L1MEc LINE L1 2109 2211 -4185 248 88 0 0 chr3 152281790 152281824 -65755334 + tRNA-Arg-AGA tRNA tRNA 1 34 -42 322 258 31 31 chr3 152284268 152284396 -65752762 + L3b LINE CR1 1324 1451 -132 1204 293 98 18 chr3 152284733 152285432 -65751726 - L2 LINE L2 -3 3310 2557 443 226 26 43 chr3 152285444 152285559 -65751599 + MIR SINE MIR 48 160 -102 346 344 33 22 chr3 152285867 152286050 -65751108 - L1ME3A LINE L1 -226 5944 5760 669 294 34 38 chr3 152286132 152286567 -65750591 - L1ME3A LINE L1 -527 5639 5209 293 251 36 0 chr3 152286981 152287111 -65750047 - L1ME3A LINE L1 -1310 4836 4696 773 168 8 0 chr3 152287204 152287323 -65749835 + FLAM_C SINE Alu 5 124 -9 579 90 0 0 chr3 152287441 152287530 -65749628 - L1MA2 LINE L1 0 6304 6216 395 176 0 11 chr3 152287530 152287621 -65749537 + L1 LINE L1 5109 5198 -948 2970 233 72 45 chr3 152287649 152288102 -65749056 - L1ME2 LINE L1 -107 6852 6413 2122 146 3 0 chr3 152288102 152288410 -65748748 + AluSx SINE Alu 1 309 -3 2970 233 72 45 chr3 152288410 152289997 -65747161 - L1ME2 LINE L1 -546 6413 4771 1746 240 17 39 chr3 152289997 152290513 -65746645 + MLT1D LTR MaLR 1 505 0 434 229 33 56 chr3 152290609 152290823 -65746335 - L1ME2 LINE L1 -5086 1337 1129 292 277 54 61 chr3 152291243 152291606 -65745552 - L1ME3A LINE L1 -1545 4601 4248 245 236 0 56 chr3 152291746 152291818 -65745340 + MLT1K LTR MaLR 179 246 -342 249 291 23 29 chr3 152291994 152292166 -65744992 + (CAGA)n Simple_repeat Simple_repeat 1 171 0 182 133 0 22 chr3 152292184 152292229 -65744929 + (CAGA)n Simple_repeat Simple_repeat 2 45 0 764 317 204 8 chr3 152292451 152293118 -65744040 + L2 LINE L2 2247 3054 -259 290 261 63 54 chr3 152293892 152294003 -65743155 + L2 LINE L2 3201 3312 -1 192 152 0 0 chr3 152294943 152294976 -65742182 - L2 LINE L2 -213 3059 3027 450 316 90 17 chr3 152295969 152296180 -65740978 - MIR SINE MIR -5 257 34 * 700 314 130 21 chr3 152296165 152296633 -65740525 + L2 LINE L2 1817 2335 -979 3526 285 131 31 chr3 152296813 152297685 -65739473 + L2 LINE L2 316 1099 -2215 1320 204 87 48 chr3 152297685 152297909 -65739249 - MSTD LTR MaLR 0 396 149 1698 126 4 8 chr3 152297909 152298147 -65739011 - AluSx SINE Alu -75 237 1 1320 204 87 48 chr3 152298147 152298300 -65738858 - MSTD LTR MaLR -247 149 4 3526 285 131 31 chr3 152298300 152298987 -65738171 + L2 LINE L2 1099 2031 -1283 211 273 209 9 chr3 152298992 152299102 -65738056 + L2 LINE L2 2256 2387 -927 580 246 43 32 chr3 152299116 152299303 -65737855 + MIR SINE MIR 71 259 -3 269 324 80 52 chr3 152299302 152299589 -65737569 + L2 LINE L2 2359 2653 -661 * 195 313 46 114 chr3 152300944 152301311 -65735847 - L2 LINE L2 -22 3250 2909 276 318 26 52 chr3 152301691 152301845 -65735313 - L2 LINE L2 -546 2768 2619 6283 48 0 0 chr3 152302081 152302848 -65734310 - L1PA8 LINE L1 0 6172 5406 393 301 52 91 chr3 152303328 152303747 -65733411 + L2 LINE L2 2870 3272 0 223 343 38 0 chr3 152303753 152303858 -65733300 - MIR SINE MIR -4 258 150 856 224 142 20 chr3 152303876 152304179 -65732979 + MER2 DNA MER2_type 1 340 -5 184 339 32 16 chr3 152304183 152304245 -65732913 - MIR SINE MIR -186 76 14 27 0 0 0 chr3 152304399 152304426 -65732732 + AT_rich Low_complexity Low_complexity 1 27 0 608 187 15 0 chr3 152304431 152304565 -65732593 + L1MA7 LINE L1 6057 6192 -99 217 236 139 14 chr3 152304919 152304991 -65732167 + L2 LINE L2 3225 3305 -8 405 0 0 0 chr3 152305307 152305352 -65731806 + (TG)n Simple_repeat Simple_repeat 2 46 0 243 172 0 81 chr3 152306176 152306263 -65730895 + T-rich Low_complexity Low_complexity 4 83 0 2432 53 0 0 chr3 152306268 152306567 -65730591 - L1PA3 LINE L1 -3 6152 5854 399 232 80 18 chr3 152309141 152309253 -65727905 - L2 LINE L2 -7 3265 3147 1200 255 45 13 chr3 152309383 152309779 -65727379 - L1ME3A LINE L1 -312 5841 5433 1469 271 104 37 chr3 152309805 152310836 -65726322 - L1ME3A LINE L1 -875 5254 4135 2314 36 0 7 chr3 152310836 152311111 -65726047 - AluYa5 SINE Alu 0 311 39 1469 271 104 37 chr3 152311111 152311246 -65725912 - L1ME3A LINE L1 -1994 4135 4010 221 238 25 12 chr3 152311260 152311340 -65725818 + (TA)n Simple_repeat Simple_repeat 2 82 0 247 278 23 34 chr3 152311363 152311539 -65725619 - L1ME3A LINE L1 -2173 3956 3783 328 238 29 0 chr3 152311900 152312005 -65725153 - L1MC4 LINE L1 -3 8039 7932 821 311 111 52 chr3 152312118 152312787 -65724371 - L1ME3A LINE L1 -4862 1257 550 1250 121 9 40 chr3 152312787 152313010 -65724148 + L1MA4A LINE L1 6084 6299 -4 352 279 72 81 chr3 152313184 152313428 -65723730 - L1MC2 LINE L1 -448 5896 5657 1476 188 116 30 chr3 152313454 152313518 -65723640 + MLT1C LTR MaLR 1 58 -409 1339 192 72 39 chr3 152313518 152313733 -65723425 + MER2 DNA MER2_type 1 232 -112 2117 108 3 14 chr3 152313733 152314053 -65723105 + AluSx SINE Alu 1 312 0 1339 192 72 39 chr3 152314053 152314170 -65722988 + MER2 DNA MER2_type 232 344 0 1476 188 116 30 chr3 152314170 152314535 -65722623 + MLT1C LTR MaLR 58 467 0 609 275 59 23 chr3 152314535 152315127 -65722031 - L1MC2 LINE L1 -536 5626 5013 240 267 0 0 chr3 152315221 152315307 -65721851 - L1MC2 LINE L1 -1301 4845 4760 542 298 102 23 chr3 152315368 152316015 -65721143 - L1MC2 LINE L1 -3105 3041 2344 223 214 29 0 chr3 152316039 152316109 -65721049 + (TA)n Simple_repeat Simple_repeat 1 72 0 27 0 0 0 chr3 152316779 152316806 -65720352 + AT_rich Low_complexity Low_complexity 1 27 0 331 283 60 26 chr3 152317734 152317893 -65719265 + MIR SINE MIR 19 189 -19 216 67 0 0 chr3 152318072 152318102 -65719056 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 234 270 253 41 chr3 152318139 152318528 -65718630 - L2 LINE L2 -92 3221 2733 2012 127 81 43 chr3 152318623 152318993 -65718165 - MLT1B LTR MaLR 0 390 7 261 281 57 66 chr3 152319000 152319237 -65717921 - L2 LINE L2 -315 2957 2725 484 271 116 62 chr3 152319578 152319803 -65717355 + MIR SINE MIR 20 256 -6 476 299 116 13 chr3 152320093 152320317 -65716841 - MIR SINE MIR -13 249 3 1161 260 24 20 chr3 152320449 152320916 -65716242 - MLT1G LTR MaLR 0 530 9 21 0 0 0 chr3 152321406 152321427 -65715731 + AT_rich Low_complexity Low_complexity 1 21 0 2353 68 0 0 chr3 152321694 152321986 -65715172 - AluSg SINE Alu -18 292 1 505 47 0 0 chr3 152322367 152322431 -65714727 - MSTC LTR MaLR 0 428 365 1369 99 0 0 chr3 152322561 152322732 -65714426 + (G)n Simple_repeat Simple_repeat 1 171 0 190 267 0 0 chr3 152322773 152322803 -65714355 + T-rich Low_complexity Low_complexity 1 30 0 322 307 11 6 chr3 152322835 152323011 -65714147 + C-rich Low_complexity Low_complexity 4 180 0 295 221 19 32 chr3 152322988 152323142 -65714016 + CT-rich Low_complexity Low_complexity 3 154 0 * 364 206 26 35 chr3 152323168 152323468 -65713690 + CT-rich Low_complexity Low_complexity 1 297 0 221 309 24 12 chr3 152323492 152323576 -65713582 + CT-rich Low_complexity Low_complexity 3 87 0 277 267 194 12 chr3 152323761 152323967 -65713191 - MLT1H LTR MaLR -261 288 1 368 212 0 47 chr3 152324451 152324536 -65712622 + MIR SINE MIR 71 151 -111 213 300 47 118 chr3 152324896 152325066 -65712092 + L2 LINE L2 3113 3270 -2 180 0 0 0 chr3 152325206 152325226 -65711932 + (T)n Simple_repeat Simple_repeat 1 20 0 2154 82 0 24 chr3 152328383 152328699 -65708459 + AluSp SINE Alu 1 309 0 29 0 0 0 chr3 152329868 152329897 -65707261 + AT_rich Low_complexity Low_complexity 1 29 0 397 269 83 15 chr3 152330156 152330375 -65706783 - MIR SINE MIR -26 236 3 634 257 16 44 chr3 152331234 152331417 -65705741 + MIR SINE MIR 47 224 -38 199 421 55 14 chr3 152331651 152331796 -65705362 + L2 LINE L2 3122 3272 0 880 271 0 10 chr3 152332757 152332964 -65704194 - MIR SINE MIR -10 252 48 259 376 75 4 chr3 152333998 152334224 -65702934 + L2 LINE L2 2341 2582 -732 1010 266 17 4 chr3 152334990 152335223 -65701935 - MIR SINE MIR -12 250 15 568 259 43 12 chr3 152335221 152335383 -65701775 - MER5B DNA MER1_type -10 168 2 * 214 291 87 0 chr3 152335496 152335599 -65701559 + L2 LINE L2 3138 3249 -23 241 324 107 29 chr3 152336129 152336290 -65700868 + MIR SINE MIR 18 190 -67 24 0 0 0 chr3 152336727 152336751 -65700407 + AT_rich Low_complexity Low_complexity 1 24 0 259 241 0 0 chr3 152336956 152337014 -65700144 - MIR SINE MIR -50 212 155 1093 130 12 0 chr3 152339250 152339419 -65697739 + AluSg/x SINE Alu 140 310 -2 197 296 99 21 chr3 152339946 152340088 -65697070 + L2 LINE L2 2654 2806 -508 1553 227 58 45 chr3 152341843 152342327 -65694831 - MER20B DNA MER1_type -7 776 287 805 130 8 8 chr3 152344519 152344642 -65692516 + L1PA15 LINE L1 6017 6139 -26 1291 256 84 29 chr3 152344684 152345138 -65692020 + LTR16C LTR ERVL 11 489 -2 321 47 0 0 chr3 152345161 152345204 -65691954 + (TG)n Simple_repeat Simple_repeat 2 44 0 1193 143 36 5 chr3 152345209 152345405 -65691753 - L1PA15 LINE L1 0 6165 5964 353 209 70 23 chr3 152346297 152346383 -65690775 - L1MC4 LINE L1 -1339 6703 6614 459 297 29 7 chr3 152346474 152346612 -65690546 + MIR SINE MIR 52 192 -70 589 217 91 14 chr3 152346648 152346791 -65690367 - MLT1G LTR MaLR 0 590 437 370 293 146 33 chr3 152347164 152347376 -65689782 - MIR SINE MIR -4 258 23 26 50 0 0 chr3 152347956 152347996 -65689162 + AT_rich Low_complexity Low_complexity 1 40 0 390 178 20 0 chr3 152349958 152350056 -65687102 + HsTC2 DNA Tc2 1 1891 -7 862 290 97 60 chr3 152350081 152350585 -65686573 + LTR33A LTR ERVL 1 523 0 379 338 140 39 chr3 152350642 152351248 -65685910 + L2 LINE L2 1857 2549 -765 832 219 50 30 chr3 152351248 152351449 -65685709 + MER63A DNA MER1_type 3 207 -3 379 338 140 39 chr3 152351449 152351564 -65685594 + L2 LINE L2 2549 2651 -663 27 29 0 0 chr3 152352883 152352917 -65684241 + AT_rich Low_complexity Low_complexity 1 34 0 956 249 163 7 chr3 152352968 152353409 -65683749 - L1ME4a LINE L1 -73 6048 5539 1563 239 73 26 chr3 152353449 152354129 -65683029 - L1ME1 LINE L1 -21 6313 5594 183 42 0 0 chr3 152354179 152354203 -65682955 + (TTA)n Simple_repeat Simple_repeat 1 24 0 185 293 0 17 chr3 152355026 152355084 -65682074 + L2 LINE L2 3207 3263 -9 493 240 45 7 chr3 152355188 152355342 -65681816 - MER119 DNA MER1_type 0 583 424 303 297 22 93 chr3 152357611 152357793 -65679365 + L2 LINE L2 2919 3087 -185 258 81 0 0 chr3 152359157 152359194 -65677964 + (TG)n Simple_repeat Simple_repeat 2 38 0 859 212 95 68 chr3 152359593 152359857 -65677301 + MSTD LTR MaLR 113 383 -13 21 36 0 0 chr3 152359957 152359985 -65677173 + AT_rich Low_complexity Low_complexity 1 28 0 526 277 17 19 chr3 152360252 152360458 -65676700 - MIR SINE MIR -56 206 2 205 304 11 43 chr3 152361121 152361213 -65675945 + MIR3 SINE MIR 5 93 -115 595 239 22 7 chr3 152361256 152361394 -65675764 - MER5B DNA MER1_type -37 141 2 379 303 49 0 chr3 152362555 152362677 -65674481 - L2 LINE L2 -4 3268 3141 276 280 84 19 chr3 152362963 152363070 -65674088 + MIR SINE MIR 31 144 -64 2211 99 0 0 chr3 152363159 152363453 -65673705 + AluSx SINE Alu 1 294 -18 281 354 123 0 chr3 152363642 152363854 -65673304 + MIR SINE MIR 20 257 -5 210 118 0 0 chr3 152364031 152364065 -65673093 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 1666 169 13 16 chr3 152364806 152365114 -65672044 - AluJb SINE Alu -5 307 1 185 345 11 11 chr3 152366235 152366322 -65670836 - MIR SINE MIR -70 138 52 194 352 171 0 chr3 152366526 152366631 -65670527 + L2 LINE L2 3150 3272 0 279 248 92 55 chr3 152366827 152366936 -65670222 + L2 LINE L2 3160 3272 0 281 271 31 31 chr3 152367041 152367137 -65670021 - MIR SINE MIR -17 245 150 731 276 27 9 chr3 152367560 152367781 -65669377 - MIR SINE MIR -29 233 9 286 289 21 21 chr3 152367853 152367950 -65669208 + MIR3 SINE MIR 59 155 -53 1519 225 59 42 chr3 152369616 152369826 -65667332 + HAL1 LINE L1 2004 2209 -298 509 0 16 0 chr3 152369826 152369887 -65667271 + (TG)n Simple_repeat Simple_repeat 1 62 0 1519 225 59 42 chr3 152369887 152370170 -65666988 + HAL1 LINE L1 2209 2505 -2 24 0 0 0 chr3 152370716 152370740 -65666418 + AT_rich Low_complexity Low_complexity 1 24 0 1069 250 169 37 chr3 152370991 152371635 -65665523 + L2 LINE L2 2343 3070 -243 484 244 99 32 chr3 152371739 152371960 -65665198 + L2 LINE L2 3077 3312 -1 199 298 18 0 chr3 152372448 152372505 -65664653 - L2 LINE L2 -15 3298 3241 27 0 0 0 chr3 152373395 152373422 -65663736 + AT_rich Low_complexity Low_complexity 1 27 0 26 50 0 0 chr3 152373516 152373556 -65663602 + AT_rich Low_complexity Low_complexity 1 40 0 202 79 16 63 chr3 152374113 152374176 -65662982 + (TA)n Simple_repeat Simple_repeat 1 60 0 26 50 0 0 chr3 152374795 152374835 -65662323 + AT_rich Low_complexity Low_complexity 1 40 0 889 304 151 36 chr3 152375551 152376403 -65660755 + L2 LINE L2 1809 2758 -556 894 220 47 5 chr3 152376973 152377164 -65659994 + MER3 DNA MER1_type 11 209 0 419 253 26 32 chr3 152378428 152378582 -65658576 + L1ME LINE L1 5576 5728 -393 231 306 65 24 chr3 152379646 152379770 -65657388 - L2 LINE L2 -20 3293 3165 600 186 0 32 chr3 152382130 152382286 -65654872 - MER113 DNA MER1_type? -370 151 1 24 0 0 0 chr3 152382782 152382806 -65654352 + AT_rich Low_complexity Low_complexity 1 24 0 536 228 72 72 chr3 152382855 152383048 -65654110 - MLT1K LTR MaLR 0 588 396 352 175 0 0 chr3 152383728 152383785 -65653373 - L2 LINE L2 -3 3310 3254 333 287 104 9 chr3 152384877 152384992 -65652166 + MIR SINE MIR 29 154 -108 244 145 177 0 chr3 152385541 152385603 -65651555 - MIR SINE MIR -71 191 119 241 270 0 0 chr3 152387499 152387562 -65649596 - L1ME LINE L1 -534 5628 5566 1258 64 19 0 chr3 152387564 152387721 -65649437 - AluY SINE Alu -8 303 144 401 279 42 52 chr3 152387722 152387944 -65649214 - L1ME LINE L1 -594 5570 5347 2442 93 3 0 chr3 152387944 152388255 -65648903 + AluSp SINE Alu 1 312 -1 401 279 42 52 chr3 152388255 152388490 -65648668 - L1ME LINE L1 -817 5347 5116 234 267 26 43 chr3 152388547 152388663 -65648495 - L1ME LINE L1 -1157 4989 4876 254 308 38 25 chr3 152388939 152389098 -65648060 - L1ME LINE L1 -1483 4663 4503 2472 29 13 33 chr3 152389515 152389822 -65647336 - AluY SINE Alu -10 301 1 788 153 0 14 chr3 152390358 152390574 -65646584 - L1PA16 LINE L1 -9 6157 5867 1040 172 0 0 chr3 152390991 152391148 -65646010 + FRAM SINE Alu 5 161 -15 249 139 0 0 chr3 152391180 152391223 -65645935 + (TCCC)n Simple_repeat Simple_repeat 4 46 0 309 207 58 23 chr3 152391517 152391604 -65645554 + MIR SINE MIR 168 257 -5 8462 149 34 9 chr3 152392659 152395019 -65642139 - L1MA2 LINE L1 -4 6300 3840 307 294 59 28 chr3 152395001 152395256 -65641902 - L1MCc LINE L1 -4949 1474 1293 * 249 286 100 24 chr3 152397813 152398005 -65639153 + MIR SINE MIR 48 256 -6 986 172 54 32 chr3 152398025 152398246 -65638912 + MER96B DNA MER1_type? 10 235 -182 231 241 54 88 chr3 152400490 152400784 -65636374 - L1ME4a LINE L1 -1 6120 5837 194 345 120 7 chr3 152401055 152401197 -65635961 + L2 LINE L2 2917 3074 -198 206 294 174 33 chr3 152401262 152401354 -65635804 + L2 LINE L2 3208 3312 -1 692 303 98 18 chr3 152401494 152401821 -65635337 - MLT1K LTR MaLR -62 526 174 195 250 33 17 chr3 152402648 152402708 -65634450 + MIR SINE MIR 80 140 -122 261 143 41 0 chr3 152403505 152403554 -65633604 - MLT1L LTR MaLR 0 615 565 238 250 62 0 chr3 152403759 152403823 -65633335 - MLT1L LTR MaLR -342 273 206 195 42 0 0 chr3 152405384 152405408 -65631750 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 1628 193 25 3 chr3 152405413 152405698 -65631460 - AluSx SINE Alu -21 291 1 751 237 46 63 chr3 152405702 152406101 -65631057 - L2 LINE L2 -239 3074 2678 1380 232 119 15 chr3 152406101 152406511 -65630647 - LTR40a LTR ERVL 0 519 67 866 256 47 19 chr3 152406555 152406872 -65630286 - L2 LINE L2 -667 2647 2322 652 188 0 0 chr3 152407581 152407698 -65629460 + Tigger2 DNA MER2_type 2 118 -2600 2302 105 13 0 chr3 152407698 152408002 -65629156 + AluSc SINE Alu 1 308 -1 949 165 12 12 chr3 152408035 152408199 -65628959 + Tigger2 DNA MER2_type 2555 2718 0 276 283 90 0 chr3 152408199 152408344 -65628814 - MER112 DNA MER1_type -98 162 5 1511 207 77 20 chr3 152410340 152410732 -65626426 + MLT2D LTR ERVL 1 414 0 236 330 76 0 chr3 152413054 152413172 -65623986 - MIR3 SINE MIR -43 165 39 474 302 113 5 chr3 152415183 152415395 -65621763 + MIR SINE MIR 16 250 -12 268 305 160 0 chr3 152415940 152416071 -65621087 + MIR SINE MIR 107 258 -4 275 269 140 0 chr3 152416167 152416260 -65620898 - MIR3 SINE MIR -15 193 88 351 273 66 8 chr3 152416538 152416659 -65620499 + MIR SINE MIR 20 147 -115 1636 202 160 8 chr3 152418373 152418774 -65618384 + MLT1C LTR MaLR 6 467 0 324 302 31 8 chr3 152419036 152419165 -65617993 + MIR SINE MIR 14 145 -117 21 0 0 0 chr3 152420576 152420597 -65616561 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr3 152420879 152420910 -65616248 + AT_rich Low_complexity Low_complexity 1 31 0 245 314 118 25 chr3 152421349 152421553 -65615605 - MIR SINE MIR -20 242 20 359 195 39 0 chr3 152422974 152423051 -65614107 - MIR SINE MIR -155 107 28 317 308 42 35 chr3 152423038 152423181 -65613977 + MIR3 SINE MIR 52 195 -13 * 2336 92 3 7 chr3 152423513 152423817 -65613341 - AluSq SINE Alu -10 303 1 311 230 61 74 chr3 152423919 152424067 -65613091 + MIR SINE MIR 49 194 -68 201 209 164 0 chr3 152424222 152424289 -65612869 + MIR SINE MIR 100 177 -85 216 200 67 0 chr3 152425989 152426034 -65611124 + MIR SINE MIR 125 172 -90 222 265 60 12 chr3 152426555 152426638 -65610520 + L2 LINE L2 2608 2694 -620 567 258 101 10 chr3 152426670 152426868 -65610290 + MIR SINE MIR 21 236 -26 220 350 52 36 chr3 152427201 152427395 -65609763 + L2 LINE L2 3114 3310 -3 288 243 14 0 chr3 152428446 152428520 -65608638 - L1MC5 LINE L1 -185 7776 7702 6377 81 19 0 chr3 152428727 152429796 -65607362 - L1PA11 LINE L1 0 6174 5082 271 269 139 19 chr3 152429912 152430020 -65607138 - L1MD3 LINE L1 -1212 6783 6663 300 234 26 0 chr3 152430021 152430098 -65607060 - MER116 DNA Mariner 0 80 2 519 269 46 27 chr3 152430274 152430493 -65606665 - L1ME LINE L1 -307 5814 5592 263 299 0 0 chr3 152430919 152430996 -65606162 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 187 296 65 19 chr3 152432786 152432894 -65604264 + L2 LINE L2 2887 2999 -273 799 157 63 0 chr3 152433186 152433345 -65603813 - L1MB8 LINE L1 -9 6169 6001 1251 216 31 17 chr3 152433377 152433668 -65603490 - L1MB7 LINE L1 -143 6041 5747 28560 43 4 1 chr3 152433707 152437965 -65599193 - L1PA5 LINE L1 -2 6152 1880 264 226 119 50 chr3 152438609 152438698 -65598460 + MER113 DNA MER1_type? 48 129 -392 2599 156 24 0 chr3 152438698 152439116 -65598042 - MSTC LTR MaLR 0 428 1 264 226 119 50 chr3 152439116 152439185 -65597973 + MER113 DNA MER1_type? 129 217 -304 708 243 33 17 chr3 152439680 152439861 -65597297 - MIR SINE MIR -35 227 44 512 229 21 21 chr3 152441040 152441180 -65595978 + LTR33 LTR ERVL 10 149 -372 369 298 50 0 chr3 152441197 152441318 -65595840 + MIR SINE MIR 117 243 -19 305 159 159 0 chr3 152441512 152441575 -65595583 + MER116 DNA Mariner 2 74 -6 * 1178 227 93 45 chr3 152441573 152441970 -65595188 - LTR33 LTR ERVL -82 439 24 623 194 18 65 chr3 152442823 152442993 -65594165 - MER5B DNA MER1_type 0 178 17 596 195 31 13 chr3 152443019 152443178 -65593980 - MER5A DNA MER1_type -24 165 4 2249 120 3 0 chr3 152443327 152443636 -65593522 - AluSg SINE Alu 0 310 1 302 236 66 19 chr3 152443945 152444051 -65593107 + MIR SINE MIR 25 135 -127 346 266 118 24 chr3 152444893 152445062 -65592096 + MIR SINE MIR 67 251 -11 258 273 13 0 chr3 152445325 152445402 -65591756 - L2 LINE L2 -218 3054 2977 255 340 21 10 chr3 152445636 152445733 -65591425 - MIR SINE MIR -151 111 14 459 309 33 74 chr3 152446608 152446851 -65590307 + MIR SINE MIR 20 252 -10 375 238 0 0 chr3 152447406 152447486 -65589672 + L2 LINE L2 3234 3313 0 195 260 130 78 chr3 152448018 152448172 -65588986 - MIR3 SINE MIR -37 171 10 180 224 82 0 chr3 152448277 152448326 -65588832 - MIR SINE MIR -93 169 117 186 271 17 0 chr3 152448391 152448450 -65588708 - MIR SINE MIR -113 95 36 460 339 80 8 chr3 152450222 152450461 -65586697 + MIR SINE MIR 7 262 0 348 226 39 0 chr3 152450475 152450577 -65586581 + L2 LINE L2 3201 3306 -7 209 250 33 0 chr3 152450805 152450865 -65586293 - MIR SINE MIR -108 154 93 575 286 46 0 chr3 152451147 152451343 -65585815 + MIR SINE MIR 58 262 0 209 325 66 82 chr3 152452024 152452267 -65584891 - L2 LINE L2 -1 3271 3033 195 276 0 0 chr3 152452951 152453009 -65584149 + L2 LINE L2 2910 2967 -305 1202 184 4 8 chr3 152503027 152503266 -65533892 - MLT1A1 LTR MaLR -127 238 1 2047 243 45 39 chr3 152503273 152504142 -65533016 - L1MDa LINE L1 -1306 5234 4361 293 350 57 13 chr3 152504282 152504439 -65532719 - L3 LINE CR1 -15 1562 1399 349 195 149 0 chr3 152506298 152506385 -65530773 + MIR SINE MIR 37 136 -72 924 224 37 30 chr3 152506390 152506685 -65530473 - Charlie4a DNA MER1_type -3 505 209 279 0 0 0 chr3 152507888 152507919 -65529239 + (CA)n Simple_repeat Simple_repeat 2 32 0 * 405 0 0 0 chr3 152507918 152507963 -65529195 + (TA)n Simple_repeat Simple_repeat 1 45 0 329 248 46 0 chr3 152507991 152508100 -65529058 - MER103 DNA DNA -52 114 1 387 304 56 19 chr3 152509049 152509230 -65527928 + MIR SINE MIR 1 191 -65 473 347 38 29 chr3 152509359 152509598 -65527560 + MIR SINE MIR 10 250 -12 4153 220 98 23 chr3 152509917 152512182 -65524976 - L1MDa LINE L1 -2335 4205 1692 207 0 0 0 chr3 152512182 152512205 -65524953 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4153 220 98 23 chr3 152512205 152512774 -65524384 - L1MDa LINE L1 -4848 1692 1167 385 181 0 0 chr3 152512775 152512847 -65524311 - MLT1A1 LTR MaLR 0 365 294 1718 286 156 7 chr3 152512948 152513890 -65523268 + L2 LINE L2 1930 3008 -305 996 179 11 185 chr3 152513966 152514419 -65522739 + MLT1A2 LTR MaLR 1 374 0 349 289 10 19 chr3 152514419 152514523 -65522635 + L2 LINE L2 3186 3288 -25 893 219 88 71 chr3 152514596 152515017 -65522141 + MSTC LTR MaLR 1 428 0 516 244 102 35 chr3 152515055 152515252 -65521906 + MER58C DNA MER1_type 6 215 0 1454 190 7 32 chr3 152517490 152517769 -65519389 + AluJo SINE Alu 2 273 -39 273 209 0 0 chr3 152517781 152517848 -65519310 + Charlie8 DNA MER1_type 98 164 -2253 347 232 12 0 chr3 152519229 152519311 -65517847 - Charlie8 DNA MER1_type -2232 185 103 417 224 32 48 chr3 152521075 152521200 -65515958 - MIR SINE MIR -75 187 65 1028 188 18 54 chr3 152521238 152521461 -65515697 + MER20 DNA MER1_type 4 218 -1 478 310 6 47 chr3 152521469 152521640 -65515518 + MIR3 SINE MIR 38 201 -7 1520 220 13 0 chr3 152521942 152522242 -65514916 - MLT1E3 LTR MaLR 0 624 321 502 239 102 58 chr3 152522305 152522510 -65514648 - MER58C DNA MER1_type -1 214 1 346 306 50 25 chr3 152522996 152523156 -65514002 - MER5B DNA MER1_type -13 165 2 236 253 12 24 chr3 152523370 152523453 -65513705 - MER5B DNA MER1_type -96 82 1 197 333 27 0 chr3 152526094 152526169 -65510989 + MIR3 SINE MIR 83 159 -49 219 288 50 86 chr3 152526235 152526374 -65510784 + MIR SINE MIR 79 212 -50 320 297 109 11 chr3 152526480 152526655 -65510503 - L1ME LINE L1 -420 5701 5510 24 53 0 0 chr3 152526749 152526787 -65510371 + AT_rich Low_complexity Low_complexity 1 38 0 282 295 11 0 chr3 152527643 152527738 -65509420 + MIR SINE MIR 163 258 -4 22 0 0 0 chr3 152528226 152528248 -65508910 + AT_rich Low_complexity Low_complexity 1 22 0 699 256 142 53 chr3 152528703 152529386 -65507772 - L2 LINE L2 -2361 953 210 246 267 40 0 chr3 152529509 152529584 -65507574 - L2 LINE L2 0 3272 3195 204 159 0 63 chr3 152529765 152529828 -65507330 + (TA)n Simple_repeat Simple_repeat 2 60 0 479 327 5 41 chr3 152529955 152530175 -65506983 + MIR SINE MIR 43 254 -8 384 250 8 8 chr3 152530475 152530595 -65506563 + MIR SINE MIR 143 262 0 1328 249 95 24 chr3 152531137 152531602 -65505556 - LTR33 LTR ERVL -2 519 22 253 294 15 0 chr3 152531934 152532002 -65505156 - L1MC4a LINE L1 -1 7807 7739 412 314 88 26 chr3 152532112 152532338 -65504820 + MIR SINE MIR 23 262 0 245 355 107 0 chr3 152532325 152532446 -65504712 + L2 LINE L2 3139 3272 0 * 236 273 122 14 chr3 152533574 152533713 -65503445 - HAL1b LINE L1 -571 777 624 234 333 9 26 chr3 152534464 152534578 -65502580 - L2 LINE L2 -543 2771 2660 2425 163 15 15 chr3 152535728 152536134 -65501024 - MSTB LTR MaLR -20 406 1 242 313 34 101 chr3 152536250 152536458 -65500700 + L2 LINE L2 2993 3186 -86 207 272 116 121 chr3 152536573 152536797 -65500361 - MIR SINE MIR -8 254 32 248 354 67 18 chr3 152537797 152538020 -65499138 + MIR SINE MIR 2 235 -27 823 199 28 17 chr3 152538345 152538521 -65498637 - MER5B DNA MER1_type 0 178 1 782 205 11 37 chr3 152538882 152539072 -65498086 - MER5A DNA MER1_type -4 185 1 2224 175 44 10 chr3 152539099 152539511 -65497647 - MSTB LTR MaLR 0 426 1 258 274 40 12 chr3 152539614 152539718 -65497440 - MIR SINE MIR -99 109 3 206 274 23 38 chr3 152541662 152541741 -65495417 + MIR SINE MIR 85 163 -63 303 278 116 35 chr3 152541840 152542013 -65495145 + MIR SINE MIR 47 233 -29 1953 170 12 7 chr3 152542144 152542514 -65494644 - MLT2B2 LTR ERVL -103 417 2 240 354 0 0 chr3 152543131 152543213 -65493945 + MARNA DNA Mariner 70 151 -435 2247 83 3 30 chr3 152543215 152543516 -65493642 + AluSx SINE Alu 1 293 -19 261 264 48 32 chr3 152543675 152543800 -65493358 + L2 LINE L2 2872 2998 -274 270 210 99 12 chr3 152544747 152544828 -65492330 + MIR SINE MIR 86 173 -89 185 316 0 0 chr3 152545311 152545368 -65491790 + MIR SINE MIR 92 148 -60 567 269 88 80 chr3 152545525 152546012 -65491146 + L1M4 LINE L1 2952 3442 -2704 286 362 34 12 chr3 152546926 152547133 -65490025 - MIR SINE MIR -46 216 2 259 354 54 0 chr3 152548462 152548609 -65488549 - MIR SINE MIR -57 205 51 229 279 81 23 chr3 152549210 152549296 -65487862 + MIR SINE MIR 33 123 -139 292 281 281 0 chr3 152549826 152549961 -65487197 + MIR SINE MIR 11 183 -79 214 335 112 11 chr3 152550546 152550734 -65486424 - MIR SINE MIR -54 208 2 263 240 96 94 chr3 152551418 152551714 -65485444 + L1M4 LINE L1 4373 4672 -1474 1121 196 23 5 chr3 152551714 152551933 -65485225 + MER58A DNA MER1_type 2 224 0 263 240 96 94 chr3 152551933 152552106 -65485052 + L1M4 LINE L1 4672 4843 -1303 308 266 105 8 chr3 152552647 152552771 -65484387 - L1ME LINE L1 -272 5849 5714 323 230 150 0 chr3 152552775 152552888 -65484270 - L1ME LINE L1 -444 5677 5548 226 361 39 31 chr3 152553115 152553245 -65483913 - MIR SINE MIR -59 149 19 723 272 8 11 chr3 152553989 152554243 -65482915 + MIR SINE MIR 14 261 -1 254 308 36 57 chr3 152554658 152554849 -65482309 - MIR SINE MIR -67 141 10 1213 262 109 24 chr3 152554849 152555307 -65481851 - MER113 DNA MER1_type? -4 517 21 494 268 9 0 chr3 152556208 152556320 -65480838 + MER81 DNA DNA 2 114 0 633 309 12 0 chr3 152556498 152556663 -65480495 - MER91A DNA MER1_type -10 186 20 351 269 160 6 chr3 152556684 152556859 -65480299 - MIR SINE MIR -21 241 40 504 263 133 28 chr3 152556863 152557118 -65480040 - MLT1H LTR MaLR -13 536 255 1800 163 86 11 chr3 152557182 152557531 -65479627 - THE1C LTR MaLR 0 375 1 248 127 0 36 chr3 152558468 152558523 -65478635 + MLT1K LTR MaLR 183 235 -353 260 276 301 0 chr3 152560943 152561099 -65476059 + L2 LINE L2 3070 3272 0 4921 155 59 22 chr3 152561631 152562616 -65474542 - L1MD1 LINE L1 0 6242 5221 402 176 66 11 chr3 152562690 152562781 -65474377 - L1MD1 LINE L1 -1199 4947 4852 390 171 26 13 chr3 152562790 152562866 -65474292 - MLT1A1 LTR MaLR -1 364 288 568 242 75 12 chr3 152564592 152564753 -65472405 - MIR SINE MIR -69 193 23 891 255 113 16 chr3 152565053 152565504 -65471654 - L1MD1 LINE L1 -2850 3296 2802 183 257 71 14 chr3 152565582 152565652 -65471506 - MIR SINE MIR -79 183 110 2154 156 77 2 chr3 152565924 152566342 -65470816 - L1MB1 LINE L1 -5 6163 5715 243 0 0 0 chr3 152566623 152566650 -65470508 + (T)n Simple_repeat Simple_repeat 1 27 0 2292 116 0 6 chr3 152569463 152569774 -65467384 + AluY SINE Alu 1 309 -2 197 227 195 23 chr3 152569990 152570118 -65467040 - MIR SINE MIR -72 190 41 224 286 24 24 chr3 152570329 152570413 -65466745 + L2 LINE L2 3186 3269 -3 279 293 40 10 chr3 152571794 152571893 -65465265 + MIR SINE MIR 33 134 -128 326 315 93 0 chr3 152572975 152573083 -65464075 + L2 LINE L2 2930 3047 -225 189 178 0 0 chr3 152573422 152573467 -65463691 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 295 280 126 59 chr3 152574827 152575066 -65462092 - L3 LINE CR1 -907 670 416 405 341 16 22 chr3 152575067 152575249 -65461909 + MER117 DNA MER1_type 1 181 -16 733 300 21 8 chr3 152575256 152575493 -65461665 + MIR SINE MIR 23 262 0 437 354 26 0 chr3 152575792 152575987 -65461171 - MIR SINE MIR -16 246 47 1375 168 9 9 chr3 152578525 152578798 -65458360 - AluJb SINE Alu 0 331 59 1136 130 13 96 chr3 152578800 152579039 -65458119 - LTR19A LTR ERV1 0 486 268 195 211 99 14 chr3 152579351 152579422 -65457736 - L2 LINE L2 -217 3055 2979 226 302 122 29 chr3 152579699 152579871 -65457287 + MIR SINE MIR 61 248 -14 362 254 78 42 chr3 152580490 152580632 -65456526 + L2 LINE L2 3165 3311 -2 232 230 80 40 chr3 152581290 152581390 -65455768 + MIR3 SINE MIR 3 106 -102 257 179 86 86 chr3 152582520 152582637 -65454521 - MER113 DNA MER1_type? -404 117 1 253 313 0 12 chr3 152582918 152582998 -65454160 - MIR SINE MIR -164 98 20 382 237 72 98 chr3 152585689 152585883 -65451275 + MIR3 SINE MIR 3 191 -17 277 241 151 49 chr3 152585921 152586124 -65451034 - MIR3 SINE MIR -11 251 15 197 286 0 20 chr3 152586280 152586329 -65450829 - L2 LINE L2 -98 3174 3127 267 291 9 64 chr3 152587954 152587983 -65449175 - MLT1J LTR MaLR -297 214 185 976 232 221 35 chr3 152587983 152588409 -65448749 - MLT1D LTR MaLR 0 505 1 267 291 9 64 chr3 152588409 152588489 -65448669 - MLT1J LTR MaLR -326 185 111 273 280 160 0 chr3 152588520 152588595 -65448563 - MER117 DNA MER1_type -110 87 1 201 220 239 18 chr3 152589910 152590019 -65447139 + MIR SINE MIR 124 256 -6 696 298 128 37 chr3 152590380 152590732 -65446426 - MLT1J2 LTR MaLR 0 450 67 190 218 146 64 chr3 152591599 152591709 -65445449 + MIR SINE MIR 13 131 -131 201 258 45 0 chr3 152591716 152591782 -65445376 + MIR SINE MIR 86 154 -108 1995 139 0 17 chr3 152593268 152593563 -65443595 + AluSx SINE Alu 11 300 -12 186 103 0 0 chr3 152597190 152597219 -65439939 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 366 244 52 0 chr3 152597420 152597535 -65439623 - MIR SINE MIR -90 172 52 262 253 32 11 chr3 152598296 152598391 -65438767 + MIR SINE MIR 38 134 -74 576 296 70 22 chr3 152600255 152600485 -65436673 - MIR SINE MIR -1 261 21 180 0 0 0 chr3 152600833 152600853 -65436305 + (TG)n Simple_repeat Simple_repeat 2 21 0 512 232 66 109 chr3 152601509 152601720 -65435438 - MER63A DNA MER1_type -8 202 1 287 356 8 17 chr3 152602142 152602260 -65434898 - MIR SINE MIR -70 192 76 180 176 0 0 chr3 152602329 152602363 -65434795 + (TG)n Simple_repeat Simple_repeat 1 34 0 196 343 15 51 chr3 152603586 152603723 -65433435 - MIR3 SINE MIR -63 145 14 1479 223 98 22 chr3 152604656 152605042 -65432116 + MER113 DNA MER1_type? 2 430 -91 752 176 79 24 chr3 152605042 152605207 -65431951 - MER96 DNA MER1_type 0 175 2 1479 223 98 22 chr3 152605207 152605277 -65431881 + MER113 DNA MER1_type? 430 493 -28 195 333 46 0 chr3 152605919 152606006 -65431152 + MIR SINE MIR 106 196 -66 302 265 188 0 chr3 152606296 152606413 -65430745 - MIR3 SINE MIR -63 145 7 2031 171 37 11 chr3 152606475 152606849 -65430309 + MLT1B LTR MaLR 5 388 -2 226 284 13 0 chr3 152607261 152607330 -65429828 + MIR SINE MIR 92 168 -40 1798 164 49 0 chr3 152608048 152608335 -65428823 - AluJb SINE Alu -11 301 1 3221 200 117 21 chr3 152608506 152609253 -65427905 - MER21B LTR ERV1 -22 841 14 207 0 0 0 chr3 152609253 152609276 -65427882 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 3221 200 117 21 chr3 152609276 152609292 -65427866 - MER21B LTR ERV1 -849 14 1 306 282 0 0 chr3 152609362 152609440 -65427718 - MER20B DNA MER1_type -607 176 99 896 276 91 40 chr3 152609522 152610018 -65427140 - LTR33 LTR ERVL 0 521 1 235 272 161 0 chr3 152610879 152610960 -65426198 - L2 LINE L2 -17 3255 3162 203 346 51 0 chr3 152611031 152611109 -65426049 - MIR SINE MIR -71 191 110 356 299 36 12 chr3 152612041 152612208 -65424950 + MIR3 SINE MIR 30 200 -8 360 0 0 0 chr3 152612312 152612352 -65424806 + (CA)n Simple_repeat Simple_repeat 1 40 0 22 0 0 0 chr3 152612353 152612375 -65424783 + AT_rich Low_complexity Low_complexity 1 22 0 314 141 0 16 chr3 152612457 152612521 -65424637 + (TG)n Simple_repeat Simple_repeat 2 64 0 199 295 74 32 chr3 152612923 152613018 -65424140 - MIR SINE MIR -115 147 49 330 340 57 20 chr3 152613479 152613723 -65423435 + L2 LINE L2 2725 2977 -337 180 26 53 26 chr3 152614160 152614198 -65422960 + (TG)n Simple_repeat Simple_repeat 2 40 0 239 268 12 0 chr3 152614762 152614844 -65422314 - LTR67 LTR ERVL 0 557 475 1913 145 0 45 chr3 152615085 152615395 -65421763 + AluSx SINE Alu 1 296 -16 244 280 8 42 chr3 152616090 152616208 -65420950 + CT-rich Low_complexity Low_complexity 2 115 0 185 282 0 0 chr3 152616524 152616563 -65420595 + L2 LINE L2 3216 3254 -18 579 260 17 23 chr3 152616616 152616793 -65420365 + MIR SINE MIR 86 261 -1 236 282 39 13 chr3 152616801 152616879 -65420279 - LTR33A LTR ERVL 0 523 444 2050 132 24 18 chr3 152616881 152617214 -65419944 + MER1B DNA MER1_type 1 335 -2 736 276 28 9 chr3 152617819 152618033 -65419125 - MIR SINE MIR -28 234 17 446 279 39 28 chr3 152619423 152619602 -65417556 - Charlie8 DNA MER1_type -2200 217 37 522 282 123 5 chr3 152620810 152621030 -65416128 - MIR SINE MIR -15 247 2 296 263 61 0 chr3 152622217 152622316 -65414842 + MARNA DNA Mariner 391 495 -91 339 167 0 0 chr3 152623786 152623852 -65413306 + (TGAA)n Simple_repeat Simple_repeat 1 66 0 261 301 30 96 chr3 152623853 152624052 -65413106 - L2 LINE L2 -86 3186 3001 196 300 163 12 chr3 152624437 152624517 -65412641 - L2 LINE L2 -22 3250 3159 326 322 82 14 chr3 152624556 152624702 -65412456 - MIR SINE MIR -21 241 86 790 141 65 49 chr3 152626178 152626234 -65410924 - MER53 DNA DNA 0 189 135 2267 89 0 10 chr3 152626234 152626526 -65410632 - AluSc SINE Alu -20 289 1 790 141 65 49 chr3 152626526 152626653 -65410505 - MER53 DNA DNA -54 135 3 320 268 225 7 chr3 152627026 152627168 -65409990 + MIR SINE MIR 9 181 -81 1583 276 31 9 chr3 152627196 152627616 -65409542 + LTR16A LTR ERVL 18 446 -4 29 0 0 0 chr3 152627661 152627690 -65409468 + AT_rich Low_complexity Low_complexity 1 29 0 257 323 101 10 chr3 152627780 152627879 -65409279 + L2 LINE L2 3151 3258 -14 193 353 27 13 chr3 152628235 152628385 -65408773 - L2 LINE L2 -504 2810 2659 25 65 0 0 chr3 152628881 152628927 -65408231 + AT_rich Low_complexity Low_complexity 1 46 0 197 225 42 99 chr3 152628999 152629141 -65408017 + L2 LINE L2 2855 2988 -284 193 320 13 27 chr3 152629289 152629364 -65407794 + L2 LINE L2 3235 3308 -5 795 298 99 45 chr3 152630708 152631223 -65405935 - L2 LINE L2 0 3313 2722 1807 126 82 58 chr3 152631223 152631411 -65405747 - THE1C LTR MaLR 0 375 193 2279 46 0 0 chr3 152631411 152631670 -65405488 - AluY SINE Alu -9 302 44 1807 126 82 58 chr3 152631670 152631846 -65405312 - THE1C LTR MaLR -182 193 2 795 298 99 45 chr3 152631846 152632229 -65404929 - L2 LINE L2 -591 2722 2361 502 276 110 0 chr3 152632889 152633034 -65404124 + MER117 DNA MER1_type 1 161 -36 207 310 0 0 chr3 152633140 152633198 -65403960 + L2 LINE L2 3256 3313 0 1070 271 82 57 chr3 152633260 152633713 -65403445 + LTR16B LTR ERVL 1 464 0 2362 223 34 11 chr3 152633913 152634553 -65402605 - L1PA16 LINE L1 -2392 3754 3100 7114 179 27 20 chr3 152634553 152634741 -65402417 + L1PA16 LINE L1 3759 3944 -2222 297 29 0 0 chr3 152634741 152634775 -65402383 - U2 snRNA snRNA -154 34 1 7114 179 27 20 chr3 152634775 152636941 -65400217 + L1PA16 LINE L1 3944 6157 -9 440 267 8 58 chr3 152637571 152637691 -65399467 + Charlie1 DNA MER1_type 1 114 -2647 204 121 0 172 chr3 152637765 152637823 -65399335 - L2 LINE L2 0 3272 3225 655 85 21 0 chr3 152638530 152638624 -65398534 - Charlie1 DNA MER1_type -233 2528 2433 * 677 223 74 14 chr3 152638623 152638771 -65398387 - Charlie1 DNA MER1_type -2599 162 6 2008 174 18 30 chr3 152639579 152639931 -65397227 + MLT2C1 LTR ERVL 1 332 -82 279 0 0 0 chr3 152639931 152639962 -65397196 + (CA)n Simple_repeat Simple_repeat 2 32 0 2008 174 18 30 chr3 152639962 152640039 -65397119 + MLT2C1 LTR ERVL 332 408 -6 373 229 153 53 chr3 152640190 152640360 -65396798 + MIR SINE MIR 57 243 -19 315 191 0 0 chr3 152641407 152641475 -65395683 + (TGGA)n Simple_repeat Simple_repeat 1 68 0 186 355 0 16 chr3 152641874 152641936 -65395222 - L2 LINE L2 -27 3286 3226 271 331 104 49 chr3 152643801 152644127 -65393031 + L2 LINE L2 2857 3200 -72 4580 216 71 24 chr3 152644130 152646281 -65390877 - L1ME1 LINE L1 -7 6159 3914 287 287 167 0 chr3 152646449 152646557 -65390601 - MIR SINE MIR -18 244 119 273 280 38 30 chr3 152646807 152646939 -65390219 + HAL1 LINE L1 2072 2204 -303 306 274 59 0 chr3 152647065 152647167 -65389991 + MIR SINE MIR 106 213 -49 247 385 77 0 chr3 152647395 152647538 -65389620 - MIR SINE MIR -83 179 26 462 53 109 19 chr3 152648170 152648497 -65388661 + (TA)n Simple_repeat Simple_repeat 1 356 0 205 258 125 94 chr3 152648539 152648667 -65388491 + MIR SINE MIR 52 183 -79 427 305 50 7 chr3 152648859 152649000 -65388158 - L2 LINE L2 -588 2726 2580 1469 221 108 39 chr3 152649132 152649178 -65387980 - MLT1C LTR MaLR 0 467 426 2321 120 5 56 chr3 152649178 152649552 -65387606 - THE1A LTR MaLR 0 355 1 12741 85 8 1 chr3 152649552 152651121 -65386037 - THE1A-int LTR MaLR 0 1580 1 1678 135 135 43 chr3 152651121 152651446 -65385712 - THE1A LTR MaLR 0 355 1 1469 221 108 39 chr3 152651446 152651832 -65385326 - MLT1C LTR MaLR -40 427 3 208 264 0 0 chr3 152651997 152652050 -65385108 + (TA)n Simple_repeat Simple_repeat 1 53 0 6425 109 31 8 chr3 152652638 152653603 -65383555 + L1MA2 LINE L1 5318 6304 0 1220 145 107 0 chr3 152653606 152653840 -65383318 + L1MA2 LINE L1 6046 6304 0 23 33 0 0 chr3 152653840 152653870 -65383288 + AT_rich Low_complexity Low_complexity 1 30 0 416 299 132 10 chr3 152653876 152654080 -65383078 - MIR SINE MIR -32 230 2 517 355 56 16 chr3 152655116 152655367 -65381791 + MIR SINE MIR 2 262 0 379 272 35 0 chr3 152655368 152655482 -65381676 - L2 LINE L2 -1 3312 3195 22 35 0 0 chr3 152655607 152655636 -65381522 + AT_rich Low_complexity Low_complexity 1 29 0 362 239 11 0 chr3 152655691 152655779 -65381379 - MER103 DNA DNA -77 89 1 2035 110 4 7 chr3 152656468 152656776 -65380382 - AluSc SINE Alu 0 307 1 2609 150 21 12 chr3 152657026 152657446 -65379712 + L1MD1 LINE L1 5819 6242 0 2035 159 69 17 chr3 152657653 152657999 -65379159 - THE1B LTR MaLR 0 364 1 12288 105 2 0 chr3 152657999 152659576 -65377582 - THE1B-int LTR MaLR 0 1580 1 2403 108 54 17 chr3 152659576 152659927 -65377231 - THE1B LTR MaLR 0 364 1 219 303 180 33 chr3 152660991 152661113 -65376045 + L2 LINE L2 3133 3272 0 1903 192 14 8 chr3 152661396 152661750 -65375408 + MLT1A1 LTR MaLR 4 359 -6 276 377 16 8 chr3 152662686 152662808 -65374350 + L2 LINE L2 3148 3270 -2 734 258 42 62 chr3 152662827 152663087 -65374071 + MIR SINE MIR 4 258 -4 252 312 39 52 chr3 152663163 152663317 -65373841 + MIR SINE MIR 51 202 -60 773 316 93 26 chr3 152663342 152663947 -65373211 + L2 LINE L2 2029 2673 -641 193 315 121 91 chr3 152664106 152664535 -65372623 + L2 LINE L2 2830 3271 -1 1156 227 18 9 chr3 152664822 152665042 -65372116 + MER58A DNA MER1_type 3 224 0 180 77 0 0 chr3 152665267 152665293 -65371865 + (CTG)n Simple_repeat Simple_repeat 1 26 0 562 309 41 37 chr3 152665322 152665565 -65371593 + MIR SINE MIR 18 261 -1 320 277 168 0 chr3 152666023 152666160 -65370998 + MIR SINE MIR 99 258 -4 290 299 80 22 chr3 152666958 152667095 -65370063 + MIR3 SINE MIR 36 180 -28 3510 277 56 31 chr3 152667246 152667806 -65369352 - L1MEc LINE L1 -4810 1586 1041 360 0 0 0 chr3 152667806 152667846 -65369312 + (TG)n Simple_repeat Simple_repeat 2 41 0 3510 277 56 31 chr3 152667846 152668755 -65368403 - L1MEc LINE L1 -5355 1041 81 446 237 43 0 chr3 152668789 152668882 -65368276 - MIR SINE MIR -92 170 74 235 146 36 18 chr3 152670240 152670295 -65366863 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 1437 197 66 26 chr3 152670330 152670711 -65366447 - HsTC2 DNA Tc2 -44 1854 1283 493 192 58 0 chr3 152670723 152670827 -65366331 - HsTC2 DNA Tc2 -1767 131 22 225 222 0 32 chr3 152670855 152670918 -65366240 - L1MC4 LINE L1 -1342 6700 6640 5327 165 18 33 chr3 152721023 152721936 -65315222 + L1MA9 LINE L1 5264 6160 -152 237 33 0 0 chr3 152721936 152721966 -65315192 + (CA)n Simple_repeat Simple_repeat 1 30 0 5327 165 18 33 chr3 152721966 152722117 -65315041 + L1MA9 LINE L1 6160 6312 0 277 200 80 27 chr3 152722171 152722246 -65314912 + MIR SINE MIR 81 159 -103 679 299 86 41 chr3 152722554 152723106 -65314052 - L1ME4a LINE L1 -16 6105 5501 2188 119 0 0 chr3 152724076 152724386 -65312772 - AluSg SINE Alu 0 310 1 1681 135 4 4 chr3 152724771 152725016 -65312142 + AluSx SINE Alu 1 245 -67 313 277 0 43 chr3 152725130 152725224 -65311934 - L1MC4 LINE L1 -1339 6703 6614 394 275 0 0 chr3 152725229 152725338 -65311820 + (TA)n Simple_repeat Simple_repeat 2 110 0 1918 158 7 3 chr3 152725370 152725661 -65311497 - AluSx SINE Alu -20 292 1 345 47 0 0 chr3 152727645 152727688 -65309470 + (TC)n Simple_repeat Simple_repeat 2 44 0 254 292 0 28 chr3 152728257 152728329 -65308829 + L2 LINE L2 3184 3253 -19 306 50 0 0 chr3 152728335 152728375 -65308783 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 218 237 53 149 chr3 152728776 152728890 -65308268 + L2 LINE L2 3170 3272 0 3744 98 8 0 chr3 152729049 152729558 -65307600 + LTR10D LTR ERV1 1 513 0 2845 91 15 10 chr3 152731592 152731986 -65305172 - L1PA10 LINE L1 -5 6163 5768 372 143 0 0 chr3 152731987 152732043 -65305115 - MLT1A1 LTR MaLR -309 56 1 2125 121 7 10 chr3 152732360 152732652 -65304506 + AluSx SINE Alu 1 293 -19 546 91 0 0 chr3 152732652 152732729 -65304429 + (TA)n Simple_repeat Simple_repeat 2 78 0 2125 121 7 10 chr3 152732729 152732743 -65304415 + AluSx SINE Alu 293 306 -6 217 310 103 24 chr3 152732834 152733047 -65304111 - L2 LINE L2 -867 2447 2218 701 138 14 41 chr3 152733222 152733367 -65303791 - L1PB1 LINE L1 0 6151 6011 190 210 32 65 chr3 152734352 152734414 -65302744 - MER5A DNA MER1_type -1 188 129 1407 224 59 3 chr3 152735777 152736099 -65301059 + MER58B DNA MER1_type 2 341 0 341 288 83 8 chr3 152736256 152736388 -65300770 - MIR SINE MIR -90 172 31 214 302 143 8 chr3 152736507 152736633 -65300525 + MIR SINE MIR 81 223 -39 208 286 29 0 chr3 152737071 152737141 -65300017 + CT-rich Low_complexity Low_complexity 5 76 0 260 319 55 0 chr3 152737642 152737733 -65299425 + MIR SINE MIR 45 140 -68 403 175 175 36 chr3 152738320 152738486 -65298672 - MIR SINE MIR 0 262 74 202 273 91 11 chr3 152738805 152738893 -65298265 - MIR SINE MIR -84 124 30 223 260 60 0 chr3 152738907 152739007 -65298151 - L3 LINE CR1 -239 1338 1233 432 267 57 28 chr3 152739018 152739194 -65297964 + MIR SINE MIR 2 182 -80 312 329 72 0 chr3 152739317 152739469 -65297689 + MIR SINE MIR 72 234 -28 209 229 43 14 chr3 152739573 152739643 -65297515 + MIR SINE MIR 82 153 -109 280 246 16 82 chr3 152740031 152740153 -65297005 - L2 LINE L2 -222 3050 2937 28 48 0 0 chr3 152740346 152740388 -65296770 + AT_rich Low_complexity Low_complexity 1 42 0 7384 124 6 15 chr3 152740388 152741869 -65295289 - L1MA1 LINE L1 0 6302 4836 2380 94 0 0 chr3 152742518 152742815 -65294343 - AluY SINE Alu -14 297 1 32 26 0 0 chr3 152743222 152743261 -65293897 + AT_rich Low_complexity Low_complexity 1 39 0 309 339 98 40 chr3 152743382 152743709 -65293449 - L1ME4a LINE L1 -237 5884 5539 391 290 111 32 chr3 152744427 152744706 -65292452 - MER102a DNA MER1_type -2 328 28 189 365 56 0 chr3 152744768 152744875 -65292283 - MIR SINE MIR -103 159 47 28 48 0 0 chr3 152746319 152746361 -65290797 + AT_rich Low_complexity Low_complexity 1 42 0 321 278 108 34 chr3 152747051 152747227 -65289931 - LTR16C LTR ERVL -29 462 274 556 204 192 12 chr3 152747230 152747402 -65289756 + MER3 DNA MER1_type 6 208 -1 786 237 27 11 chr3 152747663 152747849 -65289309 - MER5A DNA MER1_type 0 189 1 404 323 0 0 chr3 152747889 152747982 -65289176 + MER81 DNA DNA 1 93 -21 1328 206 44 38 chr3 152749286 152749651 -65287507 + L1ME1 LINE L1 5795 6161 -5 463 224 42 35 chr3 152749763 152749934 -65287224 - MIR SINE MIR -58 204 34 227 300 0 0 chr3 152750350 152750410 -65286748 + GA-rich Low_complexity Low_complexity 2 61 0 869 205 54 0 chr3 152751209 152751414 -65285744 - MIR SINE MIR -19 243 28 216 86 0 0 chr3 152751425 152751460 -65285698 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 181 286 143 29 chr3 152752834 152752939 -65284219 + L2 LINE L2 1318 1434 -1880 180 271 21 62 chr3 152753029 152753173 -65283985 + L2 LINE L2 1639 1776 -1538 292 323 12 36 chr3 152753174 152753341 -65283817 + MIR SINE MIR 100 262 0 632 308 188 25 chr3 152753359 152754375 -65282783 + L2 LINE L2 1796 2977 -337 269 333 56 21 chr3 152754484 152754628 -65282530 + L2 LINE L2 3165 3313 0 397 329 12 29 chr3 152754729 152754899 -65282259 + MIR SINE MIR 37 203 -59 265 271 14 0 chr3 152756117 152756187 -65280971 + MIR3 SINE MIR 112 182 -26 228 366 73 0 chr3 152756247 152756370 -65280788 + MIR SINE MIR 57 188 -74 636 273 157 5 chr3 152756440 152756656 -65280502 - MLT1I LTR MaLR -62 347 99 1507 204 16 30 chr3 152756808 152757175 -65279983 - MLT1A1 LTR MaLR 0 365 4 236 290 65 0 chr3 152757304 152757411 -65279747 - L1P LINE L1 -754 5397 5284 367 284 38 22 chr3 152758542 152758725 -65278433 - L1M4 LINE L1 -724 5450 5265 424 213 123 118 chr3 152759595 152759806 -65277352 - MER58C DNA MER1_type 0 215 4 344 197 0 0 chr3 152759950 152760011 -65277147 - Tigger5 DNA MER2_type 0 2323 2263 298 316 0 0 chr3 152760064 152760140 -65277018 - Tigger5 DNA MER2_type -2244 79 4 316 136 0 34 chr3 152760141 152760200 -65276958 - L2 LINE L2 0 3272 3216 442 262 50 7 chr3 152760239 152760380 -65276778 + MIR SINE MIR 10 156 -106 211 157 20 39 chr3 152760689 152760740 -65276418 - MIR SINE MIR -76 132 83 2099 200 17 40 chr3 152762774 152762864 -65274294 - Charlie1b DNA MER1_type -2238 523 432 2222 158 135 38 chr3 152762864 152763338 -65273820 - MLT2B1 LTR ERVL 0 520 1 2099 200 17 40 chr3 152763338 152763776 -65273382 - Charlie1b DNA MER1_type -2329 432 7 183 277 146 77 chr3 152764732 152764862 -65272296 - L2 LINE L2 -9 3263 3125 239 208 0 0 chr3 152765291 152765339 -65271819 - L2 LINE L2 -1 3312 3265 235 333 52 0 chr3 152765497 152765593 -65271565 + MIR SINE MIR 51 151 -111 325 226 81 24 chr3 152766051 152766175 -65270983 + MIR SINE MIR 86 216 -46 1792 190 41 25 chr3 152766395 152766759 -65270399 - MLT1A2 LTR MaLR -1 373 4 318 279 29 29 chr3 152766861 152766965 -65270193 + MIR SINE MIR 9 112 -150 357 43 0 0 chr3 152767111 152767158 -65270000 + (CA)n Simple_repeat Simple_repeat 1 47 0 324 48 0 0 chr3 152767157 152767199 -65269959 + (TC)n Simple_repeat Simple_repeat 2 43 0 * 28 29 0 0 chr3 152767334 152767369 -65269789 + AT_rich Low_complexity Low_complexity 1 35 0 341 261 221 40 chr3 152767787 152768059 -65269099 + L1ME4a LINE L1 5793 6113 -8 198 0 0 0 chr3 152768964 152768986 -65268172 + (TTA)n Simple_repeat Simple_repeat 2 23 0 2326 107 54 25 chr3 152769017 152769371 -65267787 + THE1B LTR MaLR 1 364 0 210 250 0 0 chr3 152769714 152769762 -65267396 + L2 LINE L2 3221 3268 -4 198 281 253 27 chr3 152771124 152771270 -65265888 - L2 LINE L2 0 3313 3135 315 230 0 0 chr3 152772754 152772841 -65264317 + (CTATT)n Simple_repeat Simple_repeat 5 91 0 327 171 57 0 chr3 152772855 152772925 -65264233 + MIR SINE MIR 188 261 -1 25 0 0 0 chr3 152772933 152772958 -65264200 + AT_rich Low_complexity Low_complexity 1 25 0 308 321 9 9 chr3 152772960 152773072 -65264086 - L2 LINE L2 0 3313 3202 188 325 8 24 chr3 152773067 152773190 -65263968 - L2 LINE L2 -303 2969 2849 * 2167 96 19 19 chr3 152773396 152773708 -65263450 - AluSx SINE Alu 0 312 1 666 226 49 40 chr3 152773710 152773936 -65263222 - MIR SINE MIR -13 249 22 267 219 55 0 chr3 152775350 152775423 -65261735 - MIR SINE MIR -75 187 111 196 246 58 0 chr3 152776210 152776279 -65260879 - MIR SINE MIR -70 192 120 257 252 112 89 chr3 152776730 152776944 -65260214 + MER102a DNA MER1_type 95 313 -17 346 332 96 43 chr3 152778150 152778337 -65258821 - L2 LINE L2 0 3272 3076 414 309 101 0 chr3 152780115 152780264 -65256894 - MIR SINE MIR -94 168 5 21 36 0 0 chr3 152780943 152780971 -65256187 + AT_rich Low_complexity Low_complexity 1 28 0 458 279 75 25 chr3 152781097 152781258 -65255900 + MIR SINE MIR 13 181 -81 404 292 99 12 chr3 152781291 152781462 -65255696 - MLT1L LTR MaLR -62 553 368 256 294 76 17 chr3 152784407 152784526 -65252632 - L2 LINE L2 -6 3307 3182 191 344 32 0 chr3 152785362 152785455 -65251703 + MIR SINE MIR 39 134 -74 228 324 0 0 chr3 152785661 152785735 -65251423 + MIR SINE MIR 77 150 -112 467 213 56 28 chr3 152785813 152785921 -65251237 - MLT1L LTR MaLR -2 613 503 263 259 0 0 chr3 152786002 152786056 -65251102 - MLT1L LTR MaLR -235 380 327 420 266 64 32 chr3 152786460 152786742 -65250416 + L1ME4a LINE L1 5831 6121 0 885 153 0 29 chr3 152787160 152787297 -65249861 - AluJo SINE Alu -177 135 3 3362 47 19 5 chr3 152787602 152788119 -65249039 + LTR10C LTR ERV1 1 591 0 456 274 48 24 chr3 152789684 152789852 -65247306 + MIR SINE MIR 20 191 -71 674 271 96 18 chr3 152790748 152790977 -65246181 + MIR SINE MIR 2 248 -14 318 338 39 19 chr3 152791048 152791202 -65245956 + MIR3 SINE MIR 23 179 -29 1826 125 32 21 chr3 152791206 152791485 -65245673 + AluSx SINE Alu 1 282 -30 786 312 69 14 chr3 152792406 152792752 -65244406 + LTR16C LTR ERVL 127 491 0 363 293 96 51 chr3 152792921 152793004 -65244154 + MER91A DNA MER1_type 12 90 -106 2258 204 30 66 chr3 152793004 152793579 -65243579 - MLT2B3 LTR ERVL 0 554 1 363 293 96 51 chr3 152793579 152793652 -65243506 + MER91A DNA MER1_type 90 175 -21 241 283 0 0 chr3 152793704 152793757 -65243401 + MER91A DNA MER1_type 143 195 -1 21 0 0 0 chr3 152794807 152794828 -65242330 + AT_rich Low_complexity Low_complexity 1 21 0 375 283 36 7 chr3 152795400 152795538 -65241620 + MIR3 SINE MIR 67 208 0 297 0 0 0 chr3 152795784 152795817 -65241341 + (TG)n Simple_repeat Simple_repeat 2 34 0 364 261 84 17 chr3 152796169 152796288 -65240870 + MIR SINE MIR 81 207 -55 214 296 86 0 chr3 152796582 152796663 -65240495 - L2 LINE L2 -16 3256 3169 277 349 30 8 chr3 152798289 152798421 -65238737 - MIR SINE MIR -17 245 111 1400 220 119 26 chr3 152799267 152799694 -65237464 - MLT1C LTR MaLR 0 467 1 476 307 102 5 chr3 152799922 152800137 -65237021 - MIR SINE MIR -11 251 16 203 326 163 7 chr3 152800518 152800665 -65236493 + MIR SINE MIR 45 214 -48 403 254 25 17 chr3 152801578 152801696 -65235462 + MER5B DNA MER1_type 2 120 -58 326 290 75 65 chr3 152801989 152802175 -65234983 + MIR SINE MIR 20 207 -55 267 275 38 0 chr3 152802544 152802624 -65234534 + L1ME4a LINE L1 5969 6051 -70 3159 182 25 7 chr3 152802631 152803224 -65233934 - L1MC3 LINE L1 -8 7777 7174 24 53 0 0 chr3 152803934 152803972 -65233186 + AT_rich Low_complexity Low_complexity 1 38 0 1156 178 23 5 chr3 152804259 152804473 -65232685 - MER20 DNA MER1_type 0 219 2 1460 257 139 15 chr3 152804661 152805183 -65231975 - MLT1G LTR MaLR 0 590 22 199 318 56 9 chr3 152805993 152806100 -65231058 - L2 LINE L2 -8 3264 3153 257 245 93 43 chr3 152806456 152806595 -65230563 - MLT1I LTR MaLR -263 146 1 229 288 92 107 chr3 152806616 152806943 -65230215 + L2 LINE L2 2909 3230 -42 2457 79 0 3 chr3 152807345 152807649 -65229509 - AluSq SINE Alu -10 303 1 198 0 0 0 chr3 152807700 152807722 -65229436 + (T)n Simple_repeat Simple_repeat 1 22 0 411 294 14 7 chr3 152809944 152810087 -65227071 + MER117 DNA MER1_type 1 144 -53 2104 164 21 13 chr3 152811045 152811417 -65225741 + THE1C LTR MaLR 1 375 0 729 247 20 76 chr3 152813318 152813622 -65223536 - LTR37B LTR ERV1 -68 400 114 672 234 14 0 chr3 152813623 152813764 -65223394 - MER58B DNA MER1_type 0 341 199 190 339 0 0 chr3 152813917 152813979 -65223179 - L2 LINE L2 -353 2961 2900 1589 158 34 34 chr3 152814983 152815280 -65221878 - MER2 DNA MER2_type 0 345 49 2884 82 70 10 chr3 152815287 152815320 -65221838 - MLT2A1 LTR ERVL -7 437 407 279 114 0 0 chr3 152815320 152815364 -65221794 + (TA)n Simple_repeat Simple_repeat 2 45 0 2884 82 70 10 chr3 152815364 152815742 -65221416 - MLT2A1 LTR ERVL -37 407 1 24 32 0 0 chr3 152815831 152815862 -65221296 + AT_rich Low_complexity Low_complexity 1 31 0 299 250 35 76 chr3 152817435 152817579 -65219579 + MIR SINE MIR 112 249 -13 283 298 77 66 chr3 152818079 152818260 -65218898 + L2 LINE L2 2999 3181 -91 2345 107 3 0 chr3 152818577 152818885 -65218273 + AluSg SINE Alu 1 309 -1 197 221 91 26 chr3 152819056 152819133 -65218025 - MIR SINE MIR -117 145 64 338 213 13 13 chr3 152821875 152821950 -65215208 - MLT1J LTR MaLR -330 181 107 282 189 14 14 chr3 152821996 152822070 -65215088 + (TA)n Simple_repeat Simple_repeat 2 75 0 320 86 0 52 chr3 152822070 152822128 -65215030 + (CA)n Simple_repeat Simple_repeat 2 56 0 220 310 83 21 chr3 152822473 152822618 -65214540 - L2 LINE L2 -168 3145 2992 6670 233 35 29 chr3 152822783 152825599 -65211559 + L1ME1 LINE L1 3328 6162 -4 243 345 40 29 chr3 152825815 152825989 -65211169 - L2 LINE L2 -543 2771 2596 204 40 0 0 chr3 152826882 152826907 -65210251 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 436 324 47 94 chr3 152826909 152827270 -65209888 - L2 LINE L2 -15 3257 2914 295 255 75 21 chr3 152827687 152827781 -65209377 - MIR SINE MIR -77 131 33 305 85 0 43 chr3 152829293 152829340 -65207818 - U2 snRNA snRNA -143 45 1 2292 110 0 0 chr3 152829340 152829639 -65207519 + AluSc SINE Alu 9 307 -2 421 313 50 11 chr3 152829822 152830004 -65207154 + MIR SINE MIR 53 241 -21 210 263 66 40 chr3 152830158 152830234 -65206924 - L2 LINE L2 -1 3312 3235 184 267 29 76 chr3 152830216 152830321 -65206837 - L2 LINE L2 -181 3091 2992 * 440 296 131 22 chr3 152830328 152830642 -65206516 + LTR33 LTR ERVL 15 362 -159 247 229 49 90 chr3 152832267 152832389 -65204769 - MER5B DNA MER1_type -61 117 1 314 253 32 63 chr3 152832475 152832570 -65204588 + L2 LINE L2 3164 3255 -17 207 100 0 0 chr3 152832576 152832606 -65204552 + (GGGA)n Simple_repeat Simple_repeat 3 32 0 258 171 0 0 chr3 152834867 152834908 -65202250 - MER103 DNA DNA -48 118 78 1279 198 53 11 chr3 152834908 152835171 -65201987 + AluJo SINE Alu 13 286 -26 25 0 0 0 chr3 152835172 152835197 -65201961 + AT_rich Low_complexity Low_complexity 1 25 0 385 187 107 0 chr3 152835202 152835277 -65201881 - MER103 DNA DNA -81 85 3 282 193 0 0 chr3 152836389 152836446 -65200712 + CT-rich Low_complexity Low_complexity 2 58 0 310 269 133 12 chr3 152836574 152836823 -65200335 + L1M4 LINE L1 3209 3487 -2659 7086 141 51 18 chr3 152839153 152840341 -65196817 + Tigger3b DNA MER2_type 3 1230 -1 214 200 0 0 chr3 152840391 152840431 -65196727 + L2 LINE L2 3269 3308 -5 548 301 107 10 chr3 152840794 152841000 -65196158 + MIR SINE MIR 20 245 -17 444 283 35 0 chr3 152841790 152841963 -65195195 + L1ME4a LINE L1 5755 5933 -188 22 0 0 0 chr3 152842052 152842074 -65195084 + AT_rich Low_complexity Low_complexity 1 22 0 1848 158 83 57 chr3 152843047 152843502 -65193656 - MLT1C LTR MaLR 0 467 1 288 342 70 32 chr3 152843520 152843678 -65193480 + MIR SINE MIR 76 239 -23 268 224 53 26 chr3 152844091 152844167 -65192991 + L2 LINE L2 2890 2967 -346 1917 170 13 43 chr3 152844709 152845085 -65192073 - MLT1A1 LTR MaLR 0 365 1 237 271 0 0 chr3 152847120 152847179 -65189979 + MIR SINE MIR 83 141 -121 2378 75 6 28 chr3 152847458 152847776 -65189382 - AluY SINE Alu 0 311 1 569 317 12 50 chr3 152848165 152848424 -65188734 - MIR SINE MIR -3 259 11 3522 131 36 69 chr3 152848442 152849077 -65188081 - LTR18B LTR ERVL 0 614 1 234 270 80 115 chr3 152849183 152849409 -65187749 - L2 LINE L2 -63 3209 2992 512 263 182 15 chr3 152850663 152850861 -65186297 + MIR SINE MIR 14 244 -18 1281 228 134 8 chr3 152850869 152851242 -65185916 - L1ME LINE L1 -2039 4041 3622 * 5600 88 19 8 chr3 152851227 152851999 -65185159 - L1PA10 LINE L1 -3 6165 5385 736 255 30 5 chr3 152851991 152852191 -65184967 - L1ME LINE L1 -2448 3632 3428 * 1742 221 73 0 chr3 152852259 152852751 -65184407 - L1ME LINE L1 -3029 3051 2524 1374 284 90 31 chr3 152852770 152853465 -65183693 - L1ME LINE L1 -3611 2469 94 39 80 0 0 chr3 152853700 152853788 -65183370 + AT_rich Low_complexity Low_complexity 1 88 0 35 41 0 0 chr3 152853913 152853962 -65183196 + AT_rich Low_complexity Low_complexity 1 49 0 1468 180 53 24 chr3 152854244 152854622 -65182536 - Charlie5 DNA MER1_type 0 2624 2236 544 217 39 16 chr3 152854626 152854755 -65182403 - MER3 DNA MER1_type -42 167 36 2399 149 71 22 chr3 152854872 152855280 -65181878 - MSTC LTR MaLR 0 428 1 277 286 132 0 chr3 152856333 152856424 -65180734 - MIR SINE MIR -113 149 47 211 205 167 51 chr3 152856814 152856892 -65180266 + L2 LINE L2 3210 3296 -17 22 35 0 0 chr3 152857272 152857301 -65179857 + AT_rich Low_complexity Low_complexity 1 29 0 188 265 44 15 chr3 152857546 152857614 -65179544 - MIR SINE MIR -137 125 56 419 307 17 56 chr3 152858164 152858343 -65178815 - MER20B DNA MER1_type -604 179 8 620 194 50 50 chr3 152858591 152858771 -65178387 - MIR SINE MIR -51 211 32 2393 191 24 30 chr3 152858998 152859537 -65177621 - Charlie1a DNA MER1_type 0 1455 920 1773 151 98 0 chr3 152859564 152859881 -65177277 - MLT1A1 LTR MaLR -17 348 1 3167 218 137 4 chr3 152859884 152860681 -65176477 - Charlie1a DNA MER1_type -552 903 1 319 264 99 41 chr3 152860726 152860847 -65176311 + MIR3 SINE MIR 15 142 -66 4186 198 57 16 chr3 152861511 152861804 -65175354 - MER45B DNA AcHobo -652 929 650 1299 166 9 0 chr3 152861804 152862021 -65175137 - L1PA16 LINE L1 0 6166 5948 4186 198 57 16 chr3 152862021 152862518 -65174640 - MER45B DNA AcHobo -931 650 95 1743 175 14 7 chr3 152862518 152862809 -65174349 + AluJo SINE Alu 1 293 -19 4186 198 57 16 chr3 152862809 152862909 -65174249 - MER45B DNA AcHobo -1486 95 1 347 304 92 27 chr3 152863058 152863242 -65173916 + L2 LINE L2 3118 3313 0 219 229 21 0 chr3 152863462 152863510 -65173648 + L2 LINE L2 3190 3238 -34 246 243 0 27 chr3 152863573 152863647 -65173511 + CT-rich Low_complexity Low_complexity 4 75 0 426 270 116 47 chr3 152864396 152864624 -65172534 + MIR SINE MIR 9 245 -17 228 288 15 0 chr3 152864713 152864779 -65172379 - MER96 DNA MER1_type? -104 71 5 306 319 16 81 chr3 152864803 152864988 -65172170 - MIR3 SINE MIR -22 186 14 615 195 169 7 chr3 152865459 152865613 -65171545 - MER5A DNA MER1_type 0 189 11 261 301 34 91 chr3 152865960 152866312 -65170846 + L2 LINE L2 2818 3149 -123 2200 116 3 0 chr3 152867333 152867626 -65169532 - AluSq SINE Alu -19 294 1 315 258 105 48 chr3 152868014 152868138 -65169020 - L2 LINE L2 -1 3312 3182 192 344 15 30 chr3 152869563 152869694 -65167464 + MIR SINE MIR 125 253 -9 257 287 53 11 chr3 152869874 152869968 -65167190 - MIR SINE MIR -81 127 30 820 294 65 43 chr3 152870055 152870544 -65166614 + L1M3c LINE L1 1356 1855 -5641 3396 247 58 32 chr3 152871640 152873761 -65163397 + L1M3c LINE L1 2049 4157 -3408 2091 213 24 29 chr3 152874034 152874109 -65163049 + MER54A LTR ERVL 490 564 -337 2128 131 3 3 chr3 152874109 152874414 -65162744 - AluSp SINE Alu -8 305 1 2091 213 24 29 chr3 152874414 152874752 -65162406 + MER54A LTR ERVL 564 901 0 11951 176 21 28 chr3 152874767 152876560 -65160598 + L1M3c LINE L1 4176 5947 -1618 1795 114 34 8 chr3 152876560 152876821 -65160337 + L1PB3 LINE L1 5884 6154 0 11951 176 21 28 chr3 152876821 152877580 -65159578 + L1M3c LINE L1 5947 6710 -855 427 127 0 0 chr3 153077584 153077647 -64959511 + Alu SINE Alu 238 300 -12 4304 171 17 51 chr3 153077712 153078415 -64958743 - L1MB7 LINE L1 0 6184 5540 2608 40 0 0 chr3 153078415 153078714 -64958444 - AluY SINE Alu -12 299 1 4304 171 17 51 chr3 153078714 153079075 -64958083 - L1MB7 LINE L1 -644 5540 5168 276 310 60 45 chr3 153079253 153079524 -64957634 + L1MC/D LINE L1 5617 5887 -339 4027 141 35 0 chr3 153079560 153080185 -64956973 - HSMAR2 DNA Mariner -13 1289 643 1485 252 141 9 chr3 153080306 153080937 -64956221 - L2 LINE L2 -1407 1907 1194 224 212 159 26 chr3 153081325 153081438 -64955720 - L2 LINE L2 -273 2999 2872 186 318 24 0 chr3 153081476 153081561 -64955597 + L2 LINE L2 2882 2968 -304 408 161 29 4 chr3 153081735 153081868 -64955290 + MER53 DNA DNA 1 189 0 222 203 40 0 chr3 153082118 153082192 -64954966 + (TA)n Simple_repeat Simple_repeat 2 78 0 503 319 42 55 chr3 153082481 153083008 -64954150 - L1M4 LINE L1 -3480 2666 2147 23 0 0 0 chr3 153083743 153083766 -64953392 + AT_rich Low_complexity Low_complexity 1 23 0 285 242 258 8 chr3 153085081 153085205 -64951953 - L2 LINE L2 -1 3312 3158 246 222 0 0 chr3 153085283 153085337 -64951821 - MIR3 SINE MIR -6 202 149 1821 317 89 16 chr3 153085466 153086448 -64950710 + L2 LINE L2 1706 2758 -556 385 286 45 52 chr3 153087495 153087649 -64949509 + MIR3 SINE MIR 35 187 -21 312 132 0 19 chr3 153088281 153088334 -64948824 + HSMAR2 DNA Mariner 3 54 -1248 12058 112 28 55 chr3 153088338 153090962 -64946196 + L1P3 LINE L1 8 2656 -3805 1973 114 4 4 chr3 153091062 153091334 -64945824 - AluSx SINE Alu -40 272 1 625 176 0 21 chr3 153091378 153091520 -64945638 - L1MC4 LINE L1 0 8042 7904 2382 219 66 58 chr3 153091587 153092387 -64944771 - L1MC4 LINE L1 -132 7910 7104 1064 312 83 26 chr3 153092391 153093096 -64944062 - MERVL LTR ERVL -1149 4336 3620 5922 79 95 4 chr3 153093098 153093855 -64943303 - LTR12 LTR ERV1 0 826 1 5938 85 13 2 chr3 153093855 153094643 -64942515 - HERV9 LTR ERV1 0 8399 7604 2557 149 188 57 chr3 153094622 153095418 -64941740 - HERV9 LTR ERV1 -5156 1740 840 * 746 90 18 0 chr3 153095419 153095530 -64941628 - HERV9 LTR ERV1 -3455 4944 4832 290 308 89 7 chr3 153096282 153096428 -64940730 + MIR SINE MIR 59 216 -46 292 143 0 0 chr3 153096468 153096512 -64940646 - MER33 DNA MER1_type -10 353 309 2307 102 16 0 chr3 153096512 153096817 -64940341 - AluY SINE Alu -1 310 1 3105 183 9 32 chr3 153096845 153097402 -64939756 + MLT2B3 LTR ERVL 1 544 -10 945 168 127 0 chr3 153097423 153097643 -64939515 - MER33 DNA MER1_type -72 252 5 6835 161 13 0 chr3 153098256 153099414 -64937744 - L1 LINE L1 -1361 4785 3613 16189 140 11 6 chr3 153099424 153101866 -64935292 - L1M1 LINE L1 -5111 2454 24 191 268 24 49 chr3 153102072 153102154 -64935004 + L3 LINE CR1 1489 1568 -9 897 216 10 15 chr3 153102713 153102917 -64934241 + MIR SINE MIR 58 260 -2 2245 98 7 7 chr3 153102920 153103217 -64933941 - AluSq SINE Alu -16 297 1 27 0 0 0 chr3 153103220 153103247 -64933911 + AT_rich Low_complexity Low_complexity 1 27 0 301 336 64 18 chr3 153103759 153103979 -64933179 - MIR SINE MIR -11 251 22 230 359 83 0 chr3 153104403 153104559 -64932599 - MIR SINE MIR -6 256 88 423 275 42 28 chr3 153104593 153104735 -64932423 - L2 LINE L2 -1 3312 3169 2401 137 19 92 chr3 153104769 153104919 -64932239 - Tigger2 DNA MER2_type 0 2718 2559 2113 151 0 0 chr3 153104919 153105223 -64931935 + AluSx SINE Alu 1 304 -8 2401 137 19 92 chr3 153105223 153105553 -64931605 - Tigger2 DNA MER2_type -159 2559 2273 437 159 0 0 chr3 153105543 153105612 -64931546 - Tigger2 DNA MER2_type -2649 69 1 * 1157 79 0 79 chr3 153105738 153105915 -64931243 - HERV9 LTR ERV1 -4157 4242 4080 15160 103 16 11 chr3 153105922 153108961 -64928197 - HERV9 LTR ERV1 -1995 443 13 6456 71 13 61 chr3 153108961 153109829 -64927329 - LTR12 LTR ERV1 0 826 1 15160 103 16 11 chr3 153109829 153109843 -64927315 - HERV9 LTR ERV1 -2425 13 1 1846 306 82 38 chr3 153110032 153110927 -64926231 - ERVL LTR ERVL -2376 3388 2455 677 176 8 0 chr3 153110937 153111056 -64926102 - MER3 DNA MER1_type -3 206 87 6420 125 55 3 chr3 153111157 153112342 -64924816 + L1MA3 LINE L1 5042 6290 -15 284 273 182 7 chr3 153112780 153112934 -64924224 - MIR SINE MIR -41 221 41 378 272 51 59 chr3 153113398 153113652 -64923506 + L2 LINE L2 2934 3185 -87 375 69 0 139 chr3 153113657 153113705 -64923453 - MSTB LTR MaLR 0 426 373 192 40 0 0 chr3 153113705 153113730 -64923428 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 8834 158 12 1 chr3 153113730 153115939 -64921219 - L1PA13 LINE L1 -8 6155 3921 375 69 0 139 chr3 153115939 153115961 -64921197 - MSTB LTR MaLR -51 375 365 435 216 266 7 chr3 153116325 153116464 -64920694 + MER5A DNA MER1_type 13 187 -2 230 261 31 46 chr3 153117006 153117071 -64920087 - L2 LINE L2 -18 3254 3191 811 250 95 84 chr3 153118107 153118222 -64918936 + LTR16A1 LTR ERVL 1 113 -344 2376 65 3 23 chr3 153118222 153118528 -64918630 - AluY SINE Alu -11 300 1 811 250 95 84 chr3 153118528 153118864 -64918294 + LTR16A1 LTR ERVL 113 457 0 5043 77 25 12 chr3 153119423 153120071 -64917087 + L1PA10 LINE L1 5513 6168 0 528 261 52 108 chr3 153120225 153120512 -64916646 - L1ME1 LINE L1 -5 6161 5891 853 184 37 6 chr3 153120543 153120706 -64916452 - L1PA16 LINE L1 -2 6164 5997 566 123 0 0 chr3 153120715 153120796 -64916362 + L1PA15 LINE L1 5835 5915 -251 302 111 0 0 chr3 153120852 153120897 -64916261 + L1PA15 LINE L1 5916 5960 -205 473 171 0 81 chr3 153121409 153121520 -64915638 - L1ME2 LINE L1 -242 5922 5818 * 1131 176 82 29 chr3 153121519 153121764 -64915394 - L1MD1 LINE L1 0 6242 5985 * 6998 134 16 22 chr3 153121757 153121991 -64915167 - L1MC1 LINE L1 0 6333 6099 2683 176 6 45 chr3 153121991 153122496 -64914662 + MER66B LTR ERV1 2 486 0 6998 134 16 22 chr3 153122496 153123598 -64913560 - L1MC1 LINE L1 -234 6099 5006 337 298 57 0 chr3 153123693 153123817 -64913341 - L1ME4a LINE L1 -197 5924 5794 765 134 4 14 chr3 153123954 153124193 -64912965 - MER50 LTR ERV1 -139 595 323 12393 176 29 41 chr3 153124412 153125223 -64911935 - L1PB1 LINE L1 0 6867 6048 2158 102 0 7 chr3 153125223 153125507 -64911651 + AluSq SINE Alu 7 288 -25 12393 176 29 41 chr3 153125507 153126445 -64910713 - L1PB1 LINE L1 -819 6048 5100 196 0 118 0 chr3 153126445 153126479 -64910679 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 12393 176 29 41 chr3 153126479 153130921 -64906237 - L1PB1 LINE L1 -1767 5100 694 1697 98 81 34 chr3 153130934 153131231 -64905927 - MER50 LTR ERV1 -410 324 14 255 61 0 0 chr3 153131384 153131417 -64905741 + (TG)n Simple_repeat Simple_repeat 1 33 0 248 306 86 27 chr3 153131602 153131788 -64905370 - Charlie8 DNA MER1_type -2220 197 1 266 196 18 134 chr3 153131830 153131942 -64905216 + MER102b DNA MER1_type 216 314 -27 745 260 20 15 chr3 153132472 153132672 -64904486 + MER63A DNA MER1_type 10 210 0 1860 266 120 15 chr3 153132720 153133262 -64903896 - MER115 DNA AcHobo 0 693 95 1713 90 55 7 chr3 153133365 153133654 -64903504 - HSMAR2 DNA Mariner -959 343 41 21 36 0 0 chr3 153133672 153133700 -64903458 + AT_rich Low_complexity Low_complexity 1 28 0 19762 88 14 10 chr3 153133767 153134625 -64902533 - L1PA7 LINE L1 0 6154 5300 2176 124 0 34 chr3 153134625 153134948 -64902210 - AluSq SINE Alu -1 312 1 19762 88 14 10 chr3 153134948 153137771 -64899387 - L1PA7 LINE L1 -854 5300 2461 1215 100 0 0 chr3 153137871 153138021 -64899137 - AluSq/x SINE Alu -162 150 1 1158 184 118 10 chr3 153138083 153138387 -64898771 + MER58B DNA MER1_type 1 337 -4 5356 109 29 8 chr3 153138472 153139236 -64897922 + LTR17 LTR ERV1 1 780 0 1269 182 39 24 chr3 153139555 153139890 -64897268 - MER3 DNA MER1_type 0 2624 2285 258 197 28 0 chr3 153140409 153140480 -64896678 - MER3 DNA MER1_type 0 2305 2233 625 164 0 0 chr3 153140487 153140603 -64896555 - MER3 DNA MER1_type -87 122 54 7288 124 36 9 chr3 153140763 153141576 -64895582 - Tigger3b DNA MER2_type -1797 1231 374 1907 129 21 11 chr3 153141576 153141856 -64895302 + AluSx SINE Alu 16 298 -14 7288 124 36 9 chr3 153141856 153142240 -64894918 - Tigger3b DNA MER2_type -2654 374 2 1329 277 90 21 chr3 153142256 153142779 -64894379 - L2 LINE L2 -526 2788 2230 886 245 132 20 chr3 153142780 153143135 -64894023 + MLT2C1 LTR ERVL 3 397 0 1416 120 46 0 chr3 153143181 153143398 -64893760 - MER30 DNA MER1_type -3 227 1 380 250 182 0 chr3 153143402 153143534 -64893624 - L2 LINE L2 -1108 2206 2051 202 296 0 0 chr3 153143553 153143597 -64893561 - L2 LINE L2 -1389 1925 1882 668 294 46 0 chr3 153143787 153144005 -64893153 + MIR SINE MIR 9 236 -26 246 226 78 39 chr3 153143992 153144094 -64893064 - MIR SINE MIR -91 171 66 * 2308 145 62 2 chr3 153144480 153144900 -64892258 - MER65A LTR ERV1 0 445 1 296 269 13 0 chr3 153145384 153145462 -64891696 + MIR SINE MIR 78 156 -106 * 721 258 62 21 chr3 153145453 153145647 -64891511 - MIR SINE MIR 0 262 61 2131 126 0 10 chr3 153145816 153146110 -64891048 + AluSx SINE Alu 1 291 -21 848 265 64 28 chr3 153146286 153146535 -64890623 - MIR SINE MIR 0 262 5 2133 100 31 0 chr3 153146766 153147057 -64890101 - AluSq SINE Alu -13 300 1 3172 143 25 75 chr3 153147085 153147127 -64890031 + L1MB3 LINE L1 5321 5364 -819 258 32 0 0 chr3 153147127 153147158 -64890000 + (TA)n Simple_repeat Simple_repeat 2 32 0 3172 143 25 75 chr3 153147158 153147462 -64889696 + L1MB3 LINE L1 5364 5682 -501 1568 203 34 0 chr3 153147462 153147758 -64889400 - AluJb SINE Alu -6 306 1 3172 143 25 75 chr3 153147758 153147862 -64889296 + L1MB3 LINE L1 5682 5790 -393 1966 139 67 0 chr3 153147862 153148221 -64888937 + MLT1B LTR MaLR 4 386 -4 3172 143 25 75 chr3 153148221 153148483 -64888675 + L1MB3 LINE L1 5790 5999 -184 517 125 0 0 chr3 153148509 153148589 -64888569 + AluJ/FRAM SINE Alu 225 304 -8 511 247 134 5 chr3 153148597 153148791 -64888367 - LTR33A LTR ERVL -8 515 297 321 259 167 41 chr3 153148928 153149073 -64888085 - LTR33A LTR ERVL -346 198 38 478 349 57 14 chr3 153149235 153149516 -64887642 + MLT1K LTR MaLR 91 383 -205 232 247 34 45 chr3 153149630 153149719 -64887439 - L3 LINE CR1 -671 906 819 514 280 22 16 chr3 153150082 153150264 -64886894 - MLT1K LTR MaLR -11 577 395 511 256 34 23 chr3 153150486 153150662 -64886496 - MER97a DNA MER1_type? -715 179 2 302 285 46 46 chr3 153151355 153151485 -64885673 - MIR SINE MIR -110 152 23 255 177 406 10 chr3 153153540 153153636 -64883522 - MIR SINE MIR -25 237 104 245 118 59 0 chr3 153154181 153154232 -64882926 + MLT1F LTR MaLR 1 54 -488 209 120 40 0 chr3 153154265 153154315 -64882843 + (TCTCTG)n Simple_repeat Simple_repeat 3 54 0 521 179 0 63 chr3 153154332 153154522 -64882636 + CT-rich Low_complexity Low_complexity 1 178 0 1101 211 136 7 chr3 153154540 153154834 -64882324 + MLT1F LTR MaLR 174 505 -37 408 293 114 93 chr3 153154939 153155273 -64881885 + L2 LINE L2 2912 3252 -20 419 303 38 33 chr3 153156289 153156500 -64880658 - L1M4 LINE L1 -913 5233 5022 356 216 0 10 chr3 153156500 153156514 -64880644 - L1MA10 LINE L1 -1 6333 6320 1551 201 74 40 chr3 153156514 153156653 -64880505 - L1ME1 LINE L1 -5 6161 6028 2285 104 3 0 chr3 153156653 153156950 -64880208 + AluSq SINE Alu 2 299 -14 1551 201 74 40 chr3 153156950 153157257 -64879901 - L1ME1 LINE L1 -138 6028 5700 1737 163 9 15 chr3 153157300 153157625 -64879533 - L1MC1 LINE L1 0 6333 6011 5060 138 32 11 chr3 153157625 153158599 -64878559 + L1PA16 LINE L1 5173 6151 -15 1877 138 3 12 chr3 153158640 153158967 -64878191 - L1MC1 LINE L1 -308 6025 5702 2766 129 55 2 chr3 153159067 153159598 -64877560 - L1MC/D LINE L1 -599 5745 5186 232 264 14 57 chr3 153159616 153159756 -64877402 - L1P LINE L1 -1134 5012 4879 305 262 136 0 chr3 153160995 153161098 -64876060 + MIR SINE MIR 117 233 -29 1833 96 4 12 chr3 153161223 153161501 -64875657 - AluSg SINE Alu 0 310 35 1226 191 16 19 chr3 153161690 153161947 -64875211 + MLT1B LTR MaLR 134 389 -1 536 288 183 14 chr3 153161949 153162234 -64874924 + L2 LINE L2 2974 3306 -7 2340 220 36 8 chr3 153163043 153163971 -64873187 - L1MEc LINE L1 -3327 2888 1968 2142 246 104 24 chr3 153163976 153164646 -64872512 - L1MEc LINE L1 -5547 849 126 354 184 0 0 chr3 153164646 153164722 -64872436 + (TA)n Simple_repeat Simple_repeat 2 77 0 1802 132 11 21 chr3 153164730 153165017 -64872141 - AluJo SINE Alu 0 312 29 250 232 70 99 chr3 153165765 153165907 -64871251 + HAL1 LINE L1 1329 1466 -1041 343 298 48 60 chr3 153165933 153166181 -64870977 + HAL1 LINE L1 2240 2484 -23 690 144 0 30 chr3 153166191 153166323 -64870835 - L1MB4 LINE L1 0 6180 6053 1171 118 11 72 chr3 153166423 153166685 -64870473 - L1MB4 LINE L1 -637 5543 5298 180 0 0 0 chr3 153166964 153166984 -64870174 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 642 245 176 0 chr3 153167398 153167586 -64869572 + MIR SINE MIR 4 224 -38 31 68 0 0 chr3 153167870 153167929 -64869229 + AT_rich Low_complexity Low_complexity 1 59 0 3096 156 34 13 chr3 153168862 153169476 -64867682 + L1MB7 LINE L1 5550 6176 -8 475 275 38 31 chr3 153169622 153169782 -64867376 + MIR SINE MIR 31 191 -71 519 233 10 0 chr3 153169794 153169897 -64867261 + FLAM_A SINE Alu 1 104 -38 223 241 86 17 chr3 153169954 153170012 -64867146 + MIR SINE MIR 201 262 0 521 155 0 0 chr3 153170018 153170102 -64867056 - AluJo SINE Alu -19 293 210 488 169 0 11 chr3 153170111 153170200 -64866958 - AluJo SINE Alu -182 130 43 424 230 0 26 chr3 153170310 153170423 -64866735 + L1ME1 LINE L1 6052 6161 -5 383 235 61 17 chr3 153171273 153171388 -64865770 + MIR SINE MIR 139 258 -4 1501 201 23 39 chr3 153171538 153171666 -64865492 + AluJb SINE Alu 1 130 -182 2227 119 0 3 chr3 153171666 153171976 -64865182 + AluSq SINE Alu 1 309 -4 1501 201 23 39 chr3 153171976 153172186 -64864972 + AluJb SINE Alu 130 312 0 1970 126 0 42 chr3 153172189 153172498 -64864660 + AluSx SINE Alu 1 296 -16 497 323 139 19 chr3 153172762 153173042 -64864116 + HAL1 LINE L1 94 430 -2077 390 69 0 0 chr3 153173042 153173100 -64864058 + (CA)n Simple_repeat Simple_repeat 2 59 0 497 323 139 19 chr3 153173100 153173187 -64863971 + HAL1 LINE L1 430 505 -2002 258 211 28 14 chr3 153173243 153173314 -64863844 + HAL1 LINE L1 1444 1515 -992 541 269 164 61 chr3 153173328 153173997 -64863161 + HAL1 LINE L1 1580 2317 -190 999 98 0 8 chr3 153175502 153175635 -64861523 + AluY SINE Alu 1 132 -179 2307 104 0 10 chr3 153175729 153176037 -64861121 + AluSq SINE Alu 1 305 -8 2492 251 157 29 chr3 153176667 153177648 -64859510 + L2 LINE L2 1745 2851 -463 841 165 38 0 chr3 153177876 153178034 -64859124 - Charlie1a DNA MER1_type -444 1011 848 1636 167 150 36 chr3 153178040 153178454 -64858704 - Charlie1a DNA MER1_type -979 476 16 383 161 0 0 chr3 153178746 153178808 -64858350 - MLT1A1 LTR MaLR 0 365 304 821 176 0 0 chr3 153178814 153178945 -64858213 + FLAM_C SINE Alu 1 131 -12 1680 176 33 10 chr3 153178951 153179257 -64857901 - MLT1A1 LTR MaLR -52 313 1 180 311 0 0 chr3 153179304 153179349 -64857809 + MIR SINE MIR 218 262 0 318 172 195 0 chr3 153179434 153179521 -64857637 - MER5A DNA MER1_type -77 112 9 3317 187 54 11 chr3 153179881 153180581 -64856577 - L1MB8 LINE L1 -4 6174 5445 1502 191 7 104 chr3 153180592 153180996 -64856162 + MLT1A1 LTR MaLR 1 365 0 290 127 73 36 chr3 153180996 153181051 -64856107 - MLT1A1 LTR MaLR -283 82 26 500 309 63 26 chr3 153181435 153181626 -64855532 + MIR SINE MIR 7 204 -58 2512 115 6 8 chr3 153182048 153182413 -64854745 - THE1B LTR MaLR 0 364 1 2783 194 22 73 chr3 153182834 153183562 -64853596 + LTR8 LTR ERV1 1 691 0 270 0 0 0 chr3 153184367 153184397 -64852761 + (CA)n Simple_repeat Simple_repeat 2 31 0 418 296 59 6 chr3 153184508 153184708 -64852450 - L1MEd LINE L1 -902 1588 1262 1355 272 66 76 chr3 153184743 153185218 -64851940 - L1MEd LINE L1 -4879 1240 762 361 169 60 0 chr3 153185218 153185301 -64851857 - L1MB7 LINE L1 0 6184 6097 1355 272 66 76 chr3 153185301 153185973 -64851185 - L1MEd LINE L1 -5357 762 245 2002 220 60 2 chr3 153185976 153186445 -64850713 + L1ME3 LINE L1 5666 6161 -1 467 254 25 0 chr3 153186469 153186591 -64850567 - L1MEd LINE L1 -5905 214 90 338 188 50 12 chr3 153187633 153187713 -64849445 + MLT1J LTR MaLR 71 178 -297 486 269 88 28 chr3 153187760 153187976 -64849182 + MLT1J LTR MaLR 274 502 -9 279 260 168 10 chr3 153188225 153188433 -64848725 - L1ME4a LINE L1 -4 6117 5877 36690 65 11 1 chr3 153189316 153194079 -64843079 - L1P LINE L1 -1336 4810 4 279 155 0 17 chr3 153194080 153194121 -64843037 - Tigger2 DNA MER2_type -469 2249 2210 1949 193 56 7 chr3 153194121 153194530 -64842628 - MSTB1 LTR MaLR -3 429 1 * 5743 122 9 107 chr3 153194530 153195346 -64841812 - Tigger2 DNA MER2_type -508 2210 1541 1397 65 0 11 chr3 153195346 153195531 -64841627 + L1PA8 LINE L1 5990 6172 0 5743 122 9 107 chr3 153195531 153195874 -64841284 - Tigger2 DNA MER2_type -1177 1541 1166 939 212 0 75 chr3 153195875 153196101 -64841057 + AluJo SINE Alu 87 295 -17 6725 141 28 17 chr3 153196118 153197110 -64840048 - Tigger2 DNA MER2_type -1540 1178 171 1485 204 49 64 chr3 153197110 153197560 -64839598 + LTR47B LTR ERVL 1 443 0 6725 141 28 17 chr3 153197560 153197730 -64839428 - Tigger2 DNA MER2_type -2547 171 4 594 103 0 0 chr3 153198026 153198113 -64839045 + (TA)n Simple_repeat Simple_repeat 2 88 0 2245 107 0 0 chr3 153198113 153198411 -64838747 - AluSx SINE Alu -14 298 1 22 0 0 0 chr3 153198560 153198582 -64838576 + AT_rich Low_complexity Low_complexity 1 22 0 1204 76 49 5 chr3 153198582 153198767 -64838391 - L1MA5A LINE L1 -32 6265 6073 554 279 36 47 chr3 153198871 153199010 -64838148 - L1MEd LINE L1 -4863 1509 1422 2358 81 0 0 chr3 153199010 153199308 -64837850 - AluSx SINE Alu -14 298 1 554 279 36 47 chr3 153199308 153199465 -64837693 - L1MEd LINE L1 -4950 1422 1265 588 162 0 20 chr3 153199558 153199657 -64837501 + MSTA LTR MaLR 8 104 -324 226 159 0 0 chr3 153199664 153199708 -64837450 - L1M4 LINE L1 -1194 4952 4909 661 121 30 0 chr3 153200835 153200934 -64836224 + AluSp/q SINE Alu 179 280 -33 621 311 77 26 chr3 153203437 153203904 -64833254 - HAL1b LINE L1 -503 845 355 593 37 0 25 chr3 153203907 153203988 -64833170 + (TTCC)n Simple_repeat Simple_repeat 1 79 0 537 135 0 0 chr3 153203988 153204077 -64833081 + (TC)n Simple_repeat Simple_repeat 1 89 0 880 175 7 7 chr3 153204077 153204231 -64832927 - FRAM SINE Alu -15 161 8 214 225 25 25 chr3 153204259 153204339 -64832819 + CT-rich Low_complexity Low_complexity 1 80 0 257 221 52 13 chr3 153204340 153204417 -64832741 - HAL1b LINE L1 -1020 328 249 1840 153 20 3 chr3 153204425 153204726 -64832432 + AluJb SINE Alu 6 311 -1 321 266 46 55 chr3 153204746 153204855 -64832303 - HAL1b LINE L1 -1194 154 47 2316 80 0 19 chr3 153205322 153205634 -64831524 - AluY SINE Alu -5 306 1 439 256 35 17 chr3 153206270 153206442 -64830716 - L1MC5 LINE L1 -121 7840 7666 314 264 75 69 chr3 153206525 153206684 -64830474 - L1MC5 LINE L1 -492 7469 7310 653 198 0 24 chr3 153206694 153206820 -64830338 - FLAM_A SINE Alu -10 123 1 421 329 0 13 chr3 153206835 153206993 -64830165 - L1MC4a LINE L1 -408 7400 7245 929 197 51 47 chr3 153206993 153207316 -64829842 - L1MC4 LINE L1 -733 7228 6920 807 283 28 14 chr3 153207330 153207613 -64829545 - L1MC4 LINE L1 -1003 7039 6753 449 265 100 48 chr3 153207668 153207977 -64829181 - L1MC4a LINE L1 -1435 6373 6049 1329 253 36 114 chr3 153208030 153208690 -64828468 - MER21B LTR ERV1 -157 706 98 1954 144 3 0 chr3 153208827 153209111 -64828047 - AluJb SINE Alu -13 299 15 2394 90 73 14 chr3 153209112 153209456 -64827702 - THE1B LTR MaLR 0 364 1 10775 88 83 0 chr3 153209457 153210915 -64826243 - THE1B-int LTR MaLR -1 1579 1 2089 113 73 48 chr3 153210915 153211121 -64826037 - THE1B LTR MaLR 0 364 143 2003 142 0 0 chr3 153211121 153211440 -64825718 + AluSx SINE Alu 1 319 0 2089 113 73 48 chr3 153211440 153211587 -64825571 - THE1B LTR MaLR -221 143 1 528 291 84 24 chr3 153211663 153212085 -64825073 - L1M4 LINE L1 -2255 3891 3422 1092 210 133 115 chr3 153212085 153212799 -64824359 + LTR8A LTR ERV1 1 727 0 528 291 84 24 chr3 153212799 153212896 -64824262 - L1M4 LINE L1 -2724 3422 3332 1043 131 0 6 chr3 153212915 153213090 -64824068 + (TTTC)n Simple_repeat Simple_repeat 2 175 0 1001 152 0 0 chr3 153213092 153213243 -64823915 - AluSg/x SINE Alu -32 277 127 6951 57 2 0 chr3 153213275 153214499 -64822659 - L1PA7 LINE L1 -4 6150 4920 22 0 0 0 chr3 153215967 153215989 -64821169 + AT_rich Low_complexity Low_complexity 1 22 0 302 250 160 49 chr3 153217198 153217342 -64819816 - MIR3 SINE MIR -7 201 42 1552 184 7 11 chr3 153217512 153217790 -64819368 + AluJo SINE Alu 4 280 -32 999 233 10 42 chr3 153217988 153218297 -64818861 + AluJo SINE Alu 4 302 0 316 336 34 34 chr3 153218859 153219008 -64818150 + MIR SINE MIR 2 150 -112 284 214 146 34 chr3 153219125 153219214 -64817944 - MIR SINE MIR -158 104 6 228 149 0 0 chr3 153220742 153220789 -64816369 + (T)n Simple_repeat Simple_repeat 1 47 0 1277 170 115 0 chr3 153220806 153221024 -64816134 - AluJo SINE Alu -69 243 1 188 236 28 83 chr3 153222228 153222300 -64814858 + L2 LINE L2 3205 3272 0 201 39 0 0 chr3 153222563 153222589 -64814569 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr3 153224993 153225014 -64812144 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 153225184 153225207 -64811951 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr3 153227209 153227237 -64809921 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr3 153227436 153227462 -64809696 + AT_rich Low_complexity Low_complexity 1 26 0 28 29 0 0 chr3 153228086 153228121 -64809037 + AT_rich Low_complexity Low_complexity 1 35 0 203 327 73 18 chr3 153229221 153229331 -64807827 - MIR SINE MIR -76 186 71 23 0 0 0 chr3 153230434 153230457 -64806701 + AT_rich Low_complexity Low_complexity 1 23 0 213 159 23 0 chr3 153230855 153230899 -64806259 + A-rich Low_complexity Low_complexity 3 47 0 362 308 107 19 chr3 153231550 153231808 -64805350 + L1ME LINE L1 5265 5499 -622 2468 71 0 3 chr3 153231808 153232118 -64805040 - AluY SINE Alu 0 311 3 362 308 107 19 chr3 153232118 153232303 -64804855 + L1ME LINE L1 5499 5769 -352 1593 193 37 44 chr3 153233333 153233742 -64803416 - L1MCa LINE L1 -1198 5228 4823 1736 182 23 26 chr3 153233752 153234104 -64803054 + MLT1A1 LTR MaLR 15 365 0 6645 223 18 18 chr3 153234104 153235921 -64801237 - L1MCa LINE L1 -1599 4827 3012 1342 131 0 0 chr3 153236021 153236197 -64800961 - AluSg SINE Alu -134 176 1 467 138 0 0 chr3 153236208 153236273 -64800885 - AluJo SINE Alu -23 289 225 1139 196 0 0 chr3 153236275 153236459 -64800699 - AluJo SINE Alu -125 187 4 1661 181 40 23 chr3 153236468 153236744 -64800414 - L1MCa LINE L1 -3579 2847 2577 1544 204 52 0 chr3 153236744 153237033 -64800125 - AluJo SINE Alu -8 304 1 1661 181 40 23 chr3 153237033 153237289 -64799869 - L1MCa LINE L1 -3849 2577 2297 3234 139 8 0 chr3 153237289 153237799 -64799359 + MER75 DNA T2_type 1 514 0 1661 181 40 23 chr3 153237799 153237945 -64799213 - L1MCa LINE L1 -4129 2297 2155 8956 94 27 34 chr3 153237952 153240434 -64796724 + L1PBa LINE L1 1 2725 -4138 369 0 0 0 chr3 153240434 153240475 -64796683 + (CA)n Simple_repeat Simple_repeat 2 42 0 4987 208 28 37 chr3 153240477 153241868 -64795290 + L1PBa LINE L1 2799 4176 -2686 1607 157 50 17 chr3 153241868 153242168 -64794990 - MER51B LTR ERV1 0 377 68 262 140 0 53 chr3 153242165 153242222 -64794936 - MER51B LTR ERV1 -215 162 109 * 444 186 71 71 chr3 153242232 153242372 -64794786 - MER51B LTR ERV1 -237 140 1 4249 206 6 42 chr3 153242373 153243439 -64793719 + L1 LINE L1 4174 5200 -1662 2046 148 7 0 chr3 153244639 153244944 -64792214 + AluSx SINE Alu 1 307 -5 441 0 0 0 chr3 153244944 153244993 -64792165 + (CA)n Simple_repeat Simple_repeat 2 50 0 452 298 68 24 chr3 153245781 153245986 -64791172 + MIR SINE MIR 12 225 -37 2264 92 3 0 chr3 153246203 153246486 -64790672 - AluSx SINE Alu -20 292 9 1562 167 31 17 chr3 153247965 153248258 -64788900 + AluJo SINE Alu 1 297 -15 2402 206 78 55 chr3 153248895 153249965 -64787193 + L1ME1 LINE L1 4936 6056 -110 606 116 0 0 chr3 153249967 153250053 -64787105 - AluJ/FRAM SINE Alu -13 299 214 1229 241 62 3 chr3 153250153 153250444 -64786714 + MLT1A1 LTR MaLR 58 365 0 383 179 0 36 chr3 153251699 153251783 -64785375 - MIR3 SINE MIR -7 201 121 249 211 19 0 chr3 153252043 153252095 -64785063 + L2 LINE L2 3256 3308 -5 3299 176 8 23 chr3 153253342 153254250 -64782908 + L1P5 LINE L1 4592 5482 -669 932 140 7 0 chr3 153254251 153254387 -64782771 + AluSq/x SINE Alu 1 137 -176 17487 131 12 103 chr3 153254395 153258128 -64779030 + L1P LINE L1 13 3405 -2741 739 277 31 50 chr3 153258228 153258549 -64778609 - L1ME LINE L1 -5709 361 47 425 333 77 50 chr3 153258966 153259456 -64777702 - L2 LINE L2 0 3272 2766 632 299 9 9 chr3 153259683 153259904 -64777254 - L1MC4a LINE L1 -1901 5907 5687 1683 43 0 5 chr3 153259915 153260123 -64777035 + L1PA8 LINE L1 5952 6158 -14 198 154 39 0 chr3 153260125 153260203 -64776955 + (TA)n Simple_repeat Simple_repeat 1 81 0 25 0 0 0 chr3 153260203 153260228 -64776930 + AT_rich Low_complexity Low_complexity 1 25 0 272 285 24 8 chr3 153260231 153260354 -64776804 - L1MC4a LINE L1 -439 5682 5558 5712 65 8 8 chr3 153260890 153261627 -64775531 - SVA Other Other 0 1386 650 300 354 55 6 chr3 153261666 153261847 -64775311 - L1MC4a LINE L1 -2271 5537 5348 186 43 0 0 chr3 153261870 153261893 -64775265 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4279 221 115 28 chr3 153262257 153262336 -64774822 - L1MC4 LINE L1 0 8042 7971 1865 268 40 22 chr3 153262336 153262790 -64774368 - MLT1H1 LTR MaLR -1 554 87 2270 98 0 0 chr3 153262790 153263087 -64774071 + AluSx SINE Alu 1 297 -15 1865 268 40 22 chr3 153263087 153263176 -64773982 - MLT1H1 LTR MaLR -468 87 1 4279 221 115 28 chr3 153263176 153263319 -64773839 - L1MC4 LINE L1 -71 7971 7842 731 141 0 8 chr3 153263319 153263447 -64773711 - L1MA5A LINE L1 -5 6292 6166 4279 221 115 28 chr3 153263447 153265166 -64771992 - L1MC4 LINE L1 -200 7842 5828 1272 183 0 21 chr3 153265166 153265407 -64771751 - AluJo SINE Alu -9 303 68 7173 54 0 4 chr3 153265511 153266816 -64770342 + L1PA5 LINE L1 4856 6154 0 2326 162 74 2 chr3 153266827 153267259 -64769899 + Tigger2 DNA MER2_type 2253 2715 -3 495 288 75 20 chr3 153267262 153267557 -64769601 + L1M4 LINE L1 2137 2447 -3699 589 198 48 93 chr3 153267668 153267916 -64769242 + L1M4 LINE L1 2746 2982 -3164 1244 198 208 42 chr3 153267916 153268252 -64768906 - MLT2B1 LTR ERVL 0 520 96 2112 128 3 7 chr3 153268252 153268548 -64768610 + AluSx SINE Alu 1 295 -17 1244 198 208 42 chr3 153268548 153268640 -64768518 - MLT2B1 LTR ERVL -424 96 21 513 259 78 10 chr3 153268735 153268928 -64768230 - MLT1J1 LTR MaLR -4 442 237 887 207 17 6 chr3 153268931 153269105 -64768053 - MER5A DNA MER1_type -2 187 12 561 200 17 17 chr3 153269144 153269264 -64767894 - MLT1J2 LTR MaLR -295 155 36 2923 199 63 68 chr3 153269264 153269397 -64767761 - L1MC4a LINE L1 -692 7116 6984 655 194 0 23 chr3 153269397 153269526 -64767632 - FLAM_C SINE Alu -7 126 1 2923 199 63 68 chr3 153269526 153270264 -64766894 - L1MC4a LINE L1 -824 6984 6249 2302 67 0 3 chr3 153270274 153270614 -64766544 - AluY SINE Alu 0 339 1 1855 63 31 31 chr3 153270615 153270870 -64766288 - L1PA11 LINE L1 -13 6161 5907 482 180 16 33 chr3 153270874 153270996 -64766162 + L1ME3A LINE L1 2239 2358 -3788 3082 204 50 18 chr3 153271003 153271750 -64765408 + L1ME3A LINE L1 2485 3267 -2879 1868 130 31 10 chr3 153271750 153272042 -64765116 + AluJo SINE Alu 1 298 -14 3082 204 50 18 chr3 153272042 153272193 -64764965 + L1ME3A LINE L1 3267 3412 -2734 1133 324 66 30 chr3 153272330 153273460 -64763698 - HERVL-B1 LTR ERVL -328 5326 3930 1087 252 45 19 chr3 153273477 153273786 -64763372 - HERV16 LTR ERVL -4391 605 289 266 275 107 39 chr3 153273922 153274100 -64763058 + MLT1J LTR MaLR 228 417 -94 902 296 75 35 chr3 153274285 153275877 -64761281 + L1ME3A LINE L1 3477 5177 -969 693 274 73 47 chr3 153276015 153276398 -64760760 + L1ME3A LINE L1 5374 5765 -405 257 314 58 0 chr3 153276414 153276535 -64760623 + L1ME3A LINE L1 5821 5948 -222 1385 246 99 35 chr3 153276652 153277173 -64759985 - MLT1F1 LTR MaLR -12 555 1 441 0 0 0 chr3 153277181 153277230 -64759928 + (TG)n Simple_repeat Simple_repeat 2 50 0 660 225 89 0 chr3 153277707 153277876 -64759282 - MER46C DNA MER2_type -149 189 6 8543 150 15 12 chr3 153278012 153279147 -64758011 - L1MA5 LINE L1 -1 6299 5169 1768 130 38 41 chr3 153279147 153279439 -64757719 - AluSx SINE Alu -21 291 1 8543 150 15 12 chr3 153279439 153280792 -64756366 - L1MA5 LINE L1 -1131 5169 3796 396 0 0 0 chr3 153280866 153280910 -64756248 + (TG)n Simple_repeat Simple_repeat 2 45 0 2159 195 32 53 chr3 153280914 153281421 -64755737 + MLT1D LTR MaLR 10 505 0 1055 248 102 9 chr3 153281511 153281834 -64755324 - L1MC4a LINE L1 -95 7713 7361 1980 158 0 3 chr3 153283183 153283480 -64753678 + AluJo SINE Alu 1 296 -16 281 293 192 6 chr3 153283592 153283759 -64753399 + MIR SINE MIR 40 237 -25 231 232 58 14 chr3 153284568 153284637 -64752521 + MIR SINE MIR 105 176 -86 2220 271 87 6 chr3 153284747 153285468 -64751690 + MER20B DNA MER1_type 1 780 -4 1116 225 78 92 chr3 153285533 153286044 -64751114 - MLT1J LTR MaLR 0 511 8 582 244 25 55 chr3 153286118 153286319 -64750839 + MIR SINE MIR 20 214 -48 2606 34 0 3 chr3 153286320 153286617 -64750541 + AluY SINE Alu 1 296 -15 1347 203 28 125 chr3 153287042 153287354 -64749804 + L1MC5 LINE L1 6709 7050 -911 492 117 11 21 chr3 153287354 153287448 -64749710 - L1MA5A LINE L1 0 6297 6205 1347 203 28 125 chr3 153287448 153287466 -64749692 + L1MC5 LINE L1 7050 7068 -893 207 0 0 0 chr3 153287466 153287489 -64749669 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1347 203 28 125 chr3 153287489 153287612 -64749546 + L1MC5 LINE L1 7068 7096 -865 2153 119 0 10 chr3 153287612 153287914 -64749244 - AluSx SINE Alu -13 299 1 1347 203 28 125 chr3 153287914 153288040 -64749118 + L1MC5 LINE L1 7096 7233 -728 1081 230 117 64 chr3 153288168 153288699 -64748459 + L1MC5 LINE L1 7260 7818 -143 325 326 83 21 chr3 153288961 153289203 -64747955 - MLT1K LTR MaLR -152 436 180 1600 171 51 14 chr3 153289674 153289966 -64747192 + AluJo SINE Alu 1 303 -9 1802 166 3 20 chr3 153290231 153290398 -64746760 + AluSx SINE Alu 1 162 -150 5477 84 97 1 chr3 153290398 153291152 -64746006 + LTR12 LTR ERV1 1 826 0 1802 166 3 20 chr3 153291152 153291286 -64745872 + AluSx SINE Alu 162 297 -15 381 73 73 0 chr3 153291286 153291341 -64745817 + L1PA14 LINE L1 5359 5417 -746 5348 117 5 3 chr3 153291441 153292218 -64744940 + L1PA14 LINE L1 5383 6161 0 188 234 425 0 chr3 153292284 153292378 -64744780 + MIR SINE MIR 20 153 -109 379 285 40 20 chr3 153293354 153293505 -64743653 - MIR SINE MIR -87 175 22 5308 217 73 21 chr3 153294296 153294314 -64742844 - L1M LINE L1 -820 5326 5310 1642 138 0 115 chr3 153294314 153294661 -64742497 - AluSq SINE Alu -2 311 5 5308 217 73 21 chr3 153294661 153295496 -64741662 - L1M LINE L1 -836 5310 4378 1873 171 0 0 chr3 153295496 153295794 -64741364 - AluJb SINE Alu -9 303 6 5308 217 73 21 chr3 153295794 153296445 -64740713 - L1M LINE L1 -1768 4378 3763 1742 157 25 21 chr3 153296446 153296727 -64740431 + AluJb SINE Alu 1 282 -30 434 109 73 6 chr3 153296741 153296906 -64740252 + (TA)n Simple_repeat Simple_repeat 1 176 0 3587 243 55 95 chr3 153296915 153299958 -64737200 - L1MEc LINE L1 -2373 3842 987 309 89 0 0 chr3 153299958 153300003 -64737155 + (TG)n Simple_repeat Simple_repeat 1 45 0 3587 243 55 95 chr3 153300003 153300202 -64736956 - L1MEc LINE L1 -5228 987 782 445 276 12 52 chr3 153300187 153300406 -64736752 + L1MEc LINE L1 1863 2029 -4511 * 692 60 0 0 chr3 153300571 153300654 -64736504 - AluY SINE Alu -211 100 18 834 198 47 35 chr3 153300691 153300901 -64736257 - L1MC/D LINE L1 -470 5714 5510 2221 111 0 7 chr3 153300928 153301235 -64735923 + AluSq SINE Alu 1 305 -8 1009 179 6 6 chr3 153301248 153301421 -64735737 - FRAM SINE Alu -3 173 1 1074 181 17 71 chr3 153301428 153301666 -64735492 - AluJb SINE Alu 0 312 88 367 236 122 0 chr3 153301837 153301960 -64735198 - L1MC4a LINE L1 -1486 6322 6185 704 281 132 42 chr3 153302188 153302590 -64734568 + L2 LINE L2 2876 3313 0 830 272 21 64 chr3 153302680 153302963 -64734195 - MLT1L LTR MaLR -224 391 121 258 275 14 14 chr3 153303692 153303761 -64733397 + MIR SINE MIR 28 96 -166 249 159 0 0 chr3 153304258 153304302 -64732856 + MIR SINE MIR 48 91 -171 2208 130 0 0 chr3 153305002 153305301 -64731857 + AluSx SINE Alu 1 299 -13 348 230 86 137 chr3 153305340 153305618 -64731540 + MLT1I LTR MaLR 146 409 0 338 258 21 0 chr3 153305619 153305712 -64731446 - MIR SINE MIR -9 253 159 2082 249 57 7 chr3 153305770 153306312 -64730846 + L1MEc LINE L1 34 602 -5794 1706 168 17 17 chr3 153306314 153306606 -64730552 - AluJb SINE Alu -11 301 10 4879 249 54 27 chr3 153306644 153309733 -64727425 + L1MEc LINE L1 810 3942 -2273 180 0 0 0 chr3 153309798 153309818 -64727340 + (A)n Simple_repeat Simple_repeat 1 20 0 192 40 0 0 chr3 153309821 153309846 -64727312 + (CAA)n Simple_repeat Simple_repeat 3 27 0 232 339 41 18 chr3 153310112 153310283 -64726875 - LTR67 LTR ERVL -10 547 373 4294 142 2 0 chr3 153310463 153311096 -64726062 - MER41B LTR ERV1 -1 634 1 239 229 167 10 chr3 153311235 153311331 -64725827 - LTR67 LTR ERVL -442 115 5 258 268 12 12 chr3 153311335 153311417 -64725741 - MIR SINE MIR -97 165 84 221 330 68 0 chr3 153311427 153311545 -64725613 - MIR SINE MIR -37 225 100 914 268 57 9 chr3 153312094 153312411 -64724747 + L1ME3A LINE L1 5620 5951 -219 2290 97 0 3 chr3 153312475 153312764 -64724394 + AluSg1 SINE Alu 1 288 -21 209 193 0 18 chr3 153313045 153313102 -64724056 + CT-rich Low_complexity Low_complexity 3 58 0 339 342 47 64 chr3 153313112 153313346 -64723812 - L2 LINE L2 -1 3271 3042 244 296 96 71 chr3 153313388 153313784 -64723374 - L2 LINE L2 -60 3212 2807 1680 201 91 80 chr3 153314632 153315159 -64721999 - MLT1F LTR MaLR 0 542 10 248 305 57 29 chr3 153315740 153315845 -64721313 - L2 LINE L2 -49 3223 3116 228 353 153 6 chr3 153315882 153316052 -64721106 + L2 LINE L2 2551 2745 -569 223 264 0 0 chr3 153316934 153316987 -64720171 + (TGAG)n Simple_repeat Simple_repeat 2 54 0 192 111 0 0 chr3 153317242 153317278 -64719880 + (CGG)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr3 153317300 153317321 -64719837 + GC_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr3 153317423 153317463 -64719695 + GC_rich Low_complexity Low_complexity 1 40 0 528 287 94 10 chr3 153318110 153318312 -64718846 + MIR SINE MIR 44 262 0 198 289 12 48 chr3 153318313 153318396 -64718762 + MIR SINE MIR 74 153 -109 356 212 50 0 chr3 153318867 153318966 -64718192 + MIR SINE MIR 32 135 -127 25 51 0 0 chr3 153319297 153319336 -64717822 + AT_rich Low_complexity Low_complexity 1 39 0 297 243 103 7 chr3 153319473 153319609 -64717549 + L1ME4a LINE L1 5319 5467 -2341 245 264 230 13 chr3 153319627 153319866 -64717292 + L2 LINE L2 2687 2977 -337 2351 79 0 0 chr3 153320536 153320827 -64716331 + AluY SINE Alu 7 297 -14 193 264 42 14 chr3 153321401 153321473 -64715685 - L2 LINE L2 -639 2675 2602 213 177 16 81 chr3 153322227 153322289 -64714869 + CT-rich Low_complexity Low_complexity 4 61 0 315 248 69 30 chr3 153324487 153324588 -64712570 + L2 LINE L2 3168 3272 0 623 170 45 0 chr3 153325061 153325128 -64712030 - MLT1A1 LTR MaLR -247 118 43 2504 144 51 10 chr3 153325128 153325539 -64711619 - MSTA LTR MaLR 0 428 1 623 170 45 0 chr3 153325539 153325583 -64711575 - MLT1A1 LTR MaLR -322 43 2 320 200 48 86 chr3 153326277 153326382 -64710776 + MIR SINE MIR 19 119 -143 882 287 61 64 chr3 153326387 153326781 -64710377 - L1P4 LINE L1 -441 5724 5318 309 332 55 35 chr3 153327169 153327425 -64709733 + L1ME4a LINE L1 5820 6080 -41 923 192 20 15 chr3 153327439 153327642 -64709516 - L1MC2 LINE L1 -9 6335 6132 2187 142 3 0 chr3 153327740 153328049 -64709109 - AluSx SINE Alu -2 310 1 1348 156 93 0 chr3 153328049 153328318 -64708840 - L1MC3 LINE L1 -212 7573 7280 250 45 45 23 chr3 153328323 153328367 -64708791 + (TATAA)n Simple_repeat Simple_repeat 3 47 0 316 320 87 43 chr3 153328389 153329381 -64707777 - L1M4 LINE L1 -2981 3165 2131 330 283 68 37 chr3 153331029 153331220 -64705938 - MIR SINE MIR -39 223 27 250 178 267 11 chr3 153331493 153331583 -64705575 + MIR SINE MIR 33 145 -63 840 286 25 4 chr3 153331602 153331840 -64705318 + MIR SINE MIR 16 258 -4 282 277 227 8 chr3 153332933 153333052 -64704106 + MIR SINE MIR 47 191 -71 309 235 122 20 chr3 153333052 153333150 -64704008 + MIR SINE MIR 148 255 -7 638 293 81 14 chr3 153333364 153333586 -64703572 - Charlie8 DNA MER1_type -2180 237 1 200 312 26 0 chr3 153334571 153334648 -64702510 + MIR SINE MIR 73 151 -111 203 350 50 30 chr3 153335644 153335744 -64701414 + MIR SINE MIR 51 152 -110 194 146 0 24 chr3 153336219 153336260 -64700898 + (TAA)n Simple_repeat Simple_repeat 2 41 0 958 196 12 0 chr3 153336336 153336509 -64700649 - FRAM SINE Alu -1 175 1 23 0 0 0 chr3 153336551 153336574 -64700584 + AT_rich Low_complexity Low_complexity 1 23 0 525 258 65 23 chr3 153337304 153337521 -64699637 - MIR SINE MIR -2 260 35 2081 165 81 2 chr3 153338209 153338604 -64698554 + MSTB LTR MaLR 1 426 0 461 265 43 22 chr3 153338775 153338960 -64698198 - L1MC2 LINE L1 -1897 5911 5723 374 264 86 21 chr3 153339006 153339146 -64698012 + MIR SINE MIR 98 246 -16 21 36 0 0 chr3 153339267 153339295 -64697863 + AT_rich Low_complexity Low_complexity 1 28 0 187 229 96 36 chr3 153339485 153339568 -64697590 + L2 LINE L2 3178 3265 -7 396 319 107 28 chr3 153339998 153340214 -64696944 + MIR SINE MIR 1 233 -29 417 280 21 14 chr3 153340811 153340954 -64696204 - MIR3 SINE MIR -22 186 43 461 291 22 8 chr3 153341268 153341402 -64695756 + MIR SINE MIR 40 175 -87 532 201 191 7 chr3 153341411 153341559 -64695599 - MER5A DNA MER1_type -6 183 5 1938 137 6 43 chr3 153341648 153341970 -64695188 + AluSx SINE Alu 1 310 -2 184 290 103 41 chr3 153344089 153344234 -64692924 - MER5A DNA MER1_type -10 179 26 2444 79 0 13 chr3 153344863 153345167 -64691991 + AluY SINE Alu 1 300 -11 389 299 172 27 chr3 153345461 153345792 -64691366 - L2 LINE L2 -13 3300 2922 378 273 80 0 chr3 153346030 153346158 -64691000 - MIR SINE MIR -65 143 31 540 208 64 35 chr3 153346782 153346955 -64690203 + MIR3 SINE MIR 20 197 -11 595 232 91 35 chr3 153347028 153347226 -64689932 - MER3 DNA MER1_type 0 209 1 370 277 85 8 chr3 153347577 153347707 -64689451 + MIR SINE MIR 69 208 -54 414 0 0 0 chr3 153348502 153348548 -64688610 + (TCTA)n Simple_repeat Simple_repeat 2 47 0 310 296 178 7 chr3 153348551 153348686 -64688472 - MIR SINE MIR -72 190 33 285 236 187 32 chr3 153349812 153349935 -64687223 + MIR SINE MIR 16 157 -105 383 325 104 56 chr3 153350715 153351128 -64686030 - L2 LINE L2 -1 3271 2839 1196 265 54 37 chr3 153351132 153351539 -64685619 - MLT1J LTR MaLR 0 511 98 400 280 37 0 chr3 153351529 153351636 -64685522 + MER117 DNA MER1_type 33 143 -54 * 761 282 32 18 chr3 153352200 153352420 -64684738 + MIR SINE MIR 12 234 -28 270 263 233 8 chr3 153352488 153352621 -64684537 + MIR SINE MIR 87 249 -13 620 240 111 20 chr3 153352649 153352863 -64684295 - MIR SINE MIR -27 235 5 469 298 58 0 chr3 153353418 153353589 -64683569 - MIR SINE MIR -35 227 47 240 261 51 65 chr3 153354144 153354282 -64682876 + L1ME4a LINE L1 5943 6078 -43 733 299 84 20 chr3 153354418 153354776 -64682382 + LTR16C LTR ERVL 110 490 -1 254 170 0 21 chr3 153355719 153355766 -64681392 + MIR SINE MIR 63 108 -100 2125 238 146 22 chr3 153356091 153357170 -64679988 - L2 LINE L2 0 3313 2103 278 306 27 48 chr3 153357170 153357317 -64679841 + MIR SINE MIR 119 262 0 239 326 40 45 chr3 153357414 153357571 -64679587 - MIR3 SINE MIR -59 149 11 465 286 65 40 chr3 153358001 153358200 -64678958 + MIR SINE MIR 32 235 -27 244 280 117 13 chr3 153358710 153358865 -64678293 - MIR3 SINE MIR -79 183 13 498 297 134 13 chr3 153359160 153359392 -64677766 - MIR SINE MIR -1 261 2 200 386 20 0 chr3 153359793 153359894 -64677264 + MIR SINE MIR 81 183 -79 194 300 67 0 chr3 153360134 153360224 -64676934 + L2 LINE L2 3177 3272 0 216 255 0 0 chr3 153360429 153360476 -64676682 - L2 LINE L2 -259 3054 3008 23 0 0 0 chr3 153360655 153360678 -64676480 + GC_rich Low_complexity Low_complexity 1 23 0 293 224 30 0 chr3 153360683 153360750 -64676408 + LTR16C LTR ERVL 179 247 -244 563 367 69 9 chr3 153361981 153362327 -64674831 - L3 LINE CR1 -526 1051 685 180 97 0 0 chr3 153363081 153363112 -64674046 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 865 129 0 0 chr3 153363113 153363229 -64673929 - AluSq/x SINE Alu -197 116 1 24 32 0 0 chr3 153363467 153363498 -64673660 + AT_rich Low_complexity Low_complexity 1 31 0 200 328 92 34 chr3 153363534 153363741 -64673417 - MIR SINE MIR 0 262 10 497 295 62 47 chr3 153363793 153364417 -64672741 - L1M4 LINE L1 -1336 4810 4177 1460 235 70 0 chr3 153364473 153364843 -64672315 - MSTD LTR MaLR 0 396 1 1490 47 0 0 chr3 153364858 153365029 -64672129 - AluY SINE Alu -13 298 128 381 380 117 9 chr3 153365042 153365255 -64671903 - L1MC/D LINE L1 -1992 5816 5581 2709 140 31 9 chr3 153365866 153366323 -64670835 + MLT1C LTR MaLR 1 467 0 676 311 25 13 chr3 153367115 153367353 -64669805 + MIR SINE MIR 22 262 0 180 135 0 0 chr3 153367724 153367761 -64669397 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 492 294 130 52 chr3 153367903 153368342 -64668816 - L2 LINE L2 -16 3297 2825 203 310 30 10 chr3 153369924 153370024 -64667134 - L2 LINE L2 -338 2975 2874 419 268 22 116 chr3 153371092 153371368 -64665790 - MIR SINE MIR 0 262 13 258 335 47 35 chr3 153371706 153371876 -64665282 + MIR3 SINE MIR 21 192 -16 323 256 78 52 chr3 153372243 153372434 -64664724 - MLT1K LTR MaLR -2 586 391 467 252 14 34 chr3 153372674 153372821 -64664337 - MLT1K LTR MaLR -319 269 126 2209 120 7 0 chr3 153373349 153373648 -64663510 + AluSx SINE Alu 3 303 -9 217 275 108 8 chr3 153373717 153373837 -64663321 - MIR3 SINE MIR -13 195 64 288 301 18 18 chr3 153374455 153374568 -64662590 - L2 LINE L2 -236 3036 2924 264 259 102 19 chr3 153374881 153374989 -64662169 - L1MC4a LINE L1 -1883 5925 5809 276 238 103 16 chr3 153375017 153375143 -64662015 - MIR3 SINE MIR -38 170 34 249 200 20 0 chr3 153375314 153375364 -64661794 + CT-rich Low_complexity Low_complexity 4 54 0 417 217 169 48 chr3 153376082 153376159 -64660999 - MIR SINE MIR -34 228 162 1254 249 75 16 chr3 153376159 153376545 -64660613 - MLT1I LTR MaLR 0 409 1 417 217 169 48 chr3 153376545 153376656 -64660502 - MIR SINE MIR -100 162 17 385 308 48 27 chr3 153376650 153376796 -64660362 + MIR SINE MIR 5 153 -109 * 919 196 88 10 chr3 153376806 153377010 -64660148 + MER46C DNA MER2_type 42 261 -77 351 322 53 29 chr3 153377013 153377184 -64659974 + MIR SINE MIR 88 262 0 664 228 133 24 chr3 153377761 153377972 -64659186 + MIR SINE MIR 27 260 -2 2789 0 0 0 chr3 153378037 153378343 -64658815 + AluYa5 SINE Alu 1 306 -5 4003 127 35 77 chr3 153378748 153379487 -64657671 + L1MB5 LINE L1 5425 6131 -43 1747 169 28 0 chr3 153379487 153379777 -64657381 + AluJo SINE Alu 1 298 -14 4003 127 35 77 chr3 153379777 153379819 -64657339 + L1MB5 LINE L1 6131 6173 -1 284 232 74 32 chr3 153380605 153380700 -64656458 + MIR SINE MIR 35 133 -75 676 242 56 28 chr3 153382199 153382414 -64654744 + MIR SINE MIR 21 241 -21 262 333 62 8 chr3 153382821 153382950 -64654208 - MIR SINE MIR 0 262 127 10817 63 4 0 chr3 153383180 153385325 -64651833 - L1PA6 LINE L1 -2 6152 3992 22634 112 11 18 chr3 153385326 153388748 -64648410 - L1PA6 LINE L1 -2736 3410 11 491 230 206 0 chr3 153390509 153390635 -64646523 - MER5A DNA MER1_type -21 168 17 340 265 153 29 chr3 153391785 153391955 -64645203 - MIR3 SINE MIR -15 193 3 249 259 9 62 chr3 153392289 153392401 -64644757 - MIR SINE MIR 0 262 157 291 304 145 43 chr3 153393683 153394443 -64642715 - L2 LINE L2 -2287 1027 191 293 305 34 8 chr3 153395906 153396024 -64641134 - L2 LINE L2 -235 3037 2917 233 396 0 0 chr3 153396437 153396533 -64640625 - MIR SINE MIR -101 161 66 278 218 51 13 chr3 153396789 153396867 -64640291 - MIR SINE MIR -64 198 118 1664 236 138 34 chr3 153397026 153397665 -64639493 - L1ME3A LINE L1 -5 6165 5461 7935 157 29 41 chr3 153397666 153397844 -64639314 - L1PB1 LINE L1 0 6867 6688 2189 98 0 0 chr3 153397844 153398139 -64639019 - AluSg SINE Alu -15 295 1 7935 157 29 41 chr3 153398139 153400555 -64636603 - L1PB1 LINE L1 -179 6688 4305 946 252 93 52 chr3 153400589 153401009 -64636149 - L1ME3 LINE L1 -1 6161 5725 225 0 0 0 chr3 153401012 153401037 -64636121 + (TTA)n Simple_repeat Simple_repeat 3 27 0 44480 41 4 0 chr3 153401037 153407153 -64630005 - L1PA4 LINE L1 -18 6137 1 6282 198 13 14 chr3 153407271 153408478 -64628680 - L1PB1 LINE L1 -2547 4315 3108 2373 90 0 0 chr3 153408478 153408789 -64628369 - AluY SINE Alu 0 311 1 6282 198 13 14 chr3 153408789 153408985 -64628173 - L1PB1 LINE L1 -3754 3108 2913 3163 128 6 2 chr3 153408985 153409454 -64627704 - L1PB1 LINE L1 -5280 1583 1113 463 275 0 4 chr3 153409879 153410028 -64627130 - L1ME3 LINE L1 -688 5474 5330 285 167 37 0 chr3 153410807 153410861 -64626297 - L1MB5 LINE L1 -214 5960 5905 216 200 0 0 chr3 153410878 153410923 -64626235 + A-rich Low_complexity Low_complexity 1 45 0 230 328 0 0 chr3 153411795 153411862 -64625296 + L2 LINE L2 3185 3251 -21 520 256 75 71 chr3 153412106 153412168 -64624990 + MER112 DNA MER1_type 6 66 -194 2369 44 7 0 chr3 153412168 153412462 -64624696 + AluY SINE Alu 1 296 -15 520 256 75 71 chr3 153412462 153412653 -64624505 + MER112 DNA MER1_type 66 260 0 297 250 42 0 chr3 153415154 153415226 -64621932 + MIR SINE MIR 42 116 -92 477 260 98 12 chr3 153416968 153417000 -64620158 + Charlie8 DNA MER1_type 34 62 -279 483 63 0 0 chr3 153417000 153417063 -64620095 + (TG)n Simple_repeat Simple_repeat 2 64 0 477 260 98 12 chr3 153417063 153417203 -64619955 + Charlie8 DNA MER1_type 62 221 -120 231 146 0 0 chr3 153417393 153417434 -64619724 + (CA)n Simple_repeat Simple_repeat 1 41 0 817 224 6 12 chr3 153417658 153417823 -64619335 + MER5B DNA MER1_type 15 178 0 72 47 0 0 chr3 153418347 153418454 -64618704 + AT_rich Low_complexity Low_complexity 1 107 0 1823 182 39 17 chr3 153419099 153419456 -64617702 - MLT1A1 LTR MaLR 0 365 1 1456 251 52 45 chr3 153419456 153419941 -64617217 - LTR33 LTR ERVL -1 520 33 2045 132 0 0 chr3 153420361 153420657 -64616501 + AluSx SINE Alu 4 299 -13 531 327 14 29 chr3 153420849 153421057 -64616101 - L2 LINE L2 0 3313 3109 2187 187 31 2 chr3 153421072 153421495 -64615663 + MER63B DNA MER1_type 1 435 -1 317 202 71 48 chr3 153421811 153421895 -64615263 + L1MC4 LINE L1 1982 6982 -1340 2322 241 72 18 chr3 153421896 153422772 -64614386 + L1ME3 LINE L1 3787 4709 -1437 13014 172 39 16 chr3 153422775 153426208 -64610950 + L1PA14 LINE L1 8 3786 -3798 6809 122 9 28 chr3 153426208 153427291 -64609867 + L1PA14 LINE L1 5546 6649 -950 790 84 37 0 chr3 153427291 153427398 -64609760 + L1PA14 LINE L1 6036 6146 -15 2368 65 0 29 chr3 153427400 153427707 -64609451 - AluY SINE Alu -13 298 1 6809 122 9 28 chr3 153427707 153427756 -64609402 + L1PA14 LINE L1 6650 6698 -901 469 80 53 13 chr3 153427756 153427831 -64609327 + L1PA14 LINE L1 6082 6159 -2 6809 122 9 28 chr3 153427831 153428793 -64608365 + L1PA14 LINE L1 6698 7596 -3 1569 236 45 46 chr3 153428805 153428869 -64608289 + L1ME3 LINE L1 4695 4758 -1388 2213 176 18 23 chr3 153428869 153429267 -64607891 + MSTD LTR MaLR 1 396 0 1569 236 45 46 chr3 153429267 153429762 -64607396 + L1ME3 LINE L1 4758 5253 -893 1566 221 40 38 chr3 153429765 153430185 -64606973 + L1ME3 LINE L1 5711 6131 -31 2495 71 0 0 chr3 153430204 153430515 -64606643 - AluY SINE Alu 0 311 1 21 0 0 0 chr3 153431059 153431080 -64606078 + AT_rich Low_complexity Low_complexity 1 21 0 492 192 101 123 chr3 153431213 153431330 -64605828 + L1MC5 LINE L1 7696 7814 -147 2062 82 11 19 chr3 153431330 153431600 -64605558 + AluSx SINE Alu 1 268 -44 492 192 101 123 chr3 153431600 153431612 -64605546 + L1MC5 LINE L1 7814 7825 -136 248 0 31 0 chr3 153431612 153431644 -64605514 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 492 192 101 123 chr3 153431644 153431732 -64605426 + L1MC5 LINE L1 7825 7909 -52 6953 212 37 30 chr3 153431949 153433482 -64603676 - L1ME1 LINE L1 -265 5970 4449 457 133 67 0 chr3 153433482 153433557 -64603601 + MADE1 DNA Mariner 1 80 0 6953 212 37 30 chr3 153433557 153434100 -64603058 - L1ME1 LINE L1 -1786 4449 3911 191 88 29 0 chr3 153434100 153434134 -64603024 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1443 198 22 7 chr3 153434137 153434415 -64602743 - AluJo SINE Alu -30 282 1 6953 212 37 30 chr3 153434415 153434779 -64602379 - L1ME1 LINE L1 -2325 3910 3585 10028 106 55 6 chr3 153434780 153436281 -64600877 + Tigger1 DNA MER2_type 197 1770 -648 38 39 0 0 chr3 153436292 153436344 -64600814 + AT_rich Low_complexity Low_complexity 1 52 0 261 27 81 0 chr3 153436349 153436386 -64600772 + Tigger1 DNA MER2_type 2233 2272 -146 725 209 37 0 chr3 153436513 153436647 -64600511 + Tigger1 DNA MER2_type 2280 2418 0 1074 224 29 71 chr3 153436648 153437028 -64600130 - L1ME1 LINE L1 -5980 416 53 979 252 179 5 chr3 153437045 153437474 -64599684 + L1ME1 LINE L1 4846 5349 -797 2845 235 45 11 chr3 153437577 153438333 -64598825 + L1ME1 LINE L1 5373 6154 -12 342 0 0 0 chr3 153438371 153438409 -64598749 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 1822 162 13 13 chr3 153438411 153438714 -64598444 - AluJo SINE Alu -9 303 1 620 88 0 0 chr3 153438978 153439058 -64598100 + MER41A LTR ERV1 475 554 0 2849 132 7 9 chr3 153439356 153439760 -64597398 - MER65A LTR ERV1 0 445 41 202 56 56 0 chr3 153439760 153439796 -64597362 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2849 132 7 9 chr3 153439796 153439837 -64597321 - MER65A LTR ERV1 -404 41 1 24 32 0 0 chr3 153440225 153440256 -64596902 + AT_rich Low_complexity Low_complexity 1 31 0 505 280 117 29 chr3 153440368 153440607 -64596551 + LTR67 LTR ERVL 5 264 -293 372 289 0 0 chr3 153440652 153440735 -64596423 + LTR67 LTR ERVL 403 485 -72 359 233 267 0 chr3 153440761 153440881 -64596277 + MER5A DNA MER1_type 26 177 -12 1623 165 78 2 chr3 153440984 153441310 -64595848 + L1MB2 LINE L1 5782 6127 -44 1979 136 7 0 chr3 153441310 153441627 -64595531 + AluSx SINE Alu 1 319 0 231 103 0 0 chr3 153441626 153441665 -64595493 + (CAAAT)n Simple_repeat Simple_repeat 2 40 0 2238 82 10 7 chr3 153441669 153441962 -64595196 + AluY SINE Alu 1 294 -17 4510 174 14 35 chr3 153441977 153442861 -64594297 + L1MD1 LINE L1 5374 6238 -4 225 0 0 0 chr3 153442861 153442886 -64594272 + (CA)n Simple_repeat Simple_repeat 2 26 0 247 396 9 0 chr3 153443341 153443452 -64593706 - LTR67 LTR ERVL -333 224 113 180 111 0 0 chr3 153443952 153443979 -64593179 + (ATG)n Simple_repeat Simple_repeat 2 28 0 608 232 54 32 chr3 153444004 153444189 -64592969 - MIR SINE MIR -10 252 64 227 186 0 100 chr3 153445475 153445510 -64591648 - MIR SINE MIR 0 262 236 1084 276 25 39 chr3 153445510 153445916 -64591242 + MER93a LTR ERV1 3 402 0 227 186 0 100 chr3 153445916 153445950 -64591208 - MIR SINE MIR -26 236 200 983 270 110 8 chr3 153447701 153448056 -64589102 + LTR16C LTR ERVL 99 489 -2 274 303 0 13 chr3 153449697 153449773 -64587385 - MER5A DNA MER1_type -1 188 114 244 333 26 34 chr3 153449698 153449815 -64587343 + MER5A DNA MER1_type 17 132 -57 * 22 0 0 0 chr3 153449841 153449863 -64587295 + AT_rich Low_complexity Low_complexity 1 22 0 202 54 27 27 chr3 153449869 153449906 -64587252 + (TTTTG)n Simple_repeat Simple_repeat 5 41 0 669 205 8 0 chr3 153449918 153450059 -64587099 - FLAM_A SINE Alu 0 142 1 264 229 0 0 chr3 153450078 153450126 -64587032 - L3 LINE CR1 -11 1566 1519 1087 273 190 18 chr3 153450247 153450570 -64586588 - MLT1K LTR MaLR 0 588 322 1813 114 9 95 chr3 153450570 153450895 -64586263 - AluSx SINE Alu -15 297 1 1087 273 190 18 chr3 153450895 153451065 -64586093 - MLT1K LTR MaLR -266 322 10 338 294 175 0 chr3 153451845 153451971 -64585187 + MER91A DNA MER1_type 1 148 -48 378 208 20 20 chr3 153452252 153452353 -64584805 + LTR33A LTR ERVL 1 101 -422 460 277 146 85 chr3 153452377 153452706 -64584452 + L2 LINE L2 2917 3265 -7 203 299 11 35 chr3 153452719 153452806 -64584352 - MIR SINE MIR -50 212 128 2224 122 0 0 chr3 153452850 153453145 -64584013 + AluSx SINE Alu 1 295 -17 709 290 36 13 chr3 153453311 153453535 -64583623 + MIR SINE MIR 32 260 -2 416 274 146 12 chr3 153453576 153453740 -64583418 - MER5A DNA MER1_type 0 189 4 400 299 44 20 chr3 153454607 153454811 -64582347 - HAL1 LINE L1 -21 2486 2278 2161 144 0 0 chr3 153455019 153455372 -64581786 - AluSx SINE Alu 0 353 1 455 230 58 58 chr3 153455460 153455651 -64581507 - HAL1 LINE L1 -343 2164 1974 228 252 281 0 chr3 153455997 153456132 -64581026 - HAL1 LINE L1 -623 1884 1712 272 277 79 0 chr3 153456210 153456311 -64580847 - Charlie7 DNA MER1_type -1074 1538 1430 683 300 37 17 chr3 153456327 153456624 -64580534 - Charlie7 DNA MER1_type -2309 303 1 1221 162 0 6 chr3 153456829 153457149 -64580009 + (TGGA)n Simple_repeat Simple_repeat 3 319 0 366 287 122 0 chr3 153457208 153457323 -64579835 + L2 LINE L2 3144 3272 0 183 208 0 57 chr3 153457600 153457653 -64579505 - MIR SINE MIR -96 166 117 228 230 257 14 chr3 153457672 153457746 -64579412 + MIR SINE MIR 30 122 -86 459 257 137 11 chr3 153458263 153458446 -64578712 + MIR SINE MIR 43 248 -14 22778 176 50 16 chr3 153458683 153459704 -64577454 + L1PA13 LINE L1 1 986 -6615 2525 75 0 0 chr3 153459704 153460012 -64577146 - AluY SINE Alu -3 308 1 22778 176 50 16 chr3 153460012 153466271 -64570887 + L1PA13 LINE L1 986 7600 -1 636 183 0 0 chr3 153466385 153466522 -64570636 + (TGGA)n Simple_repeat Simple_repeat 4 140 0 250 295 24 0 chr3 153467131 153467225 -64569933 + MER5B DNA MER1_type 63 147 -31 410 255 194 20 chr3 153467266 153467462 -64569696 + MIR SINE MIR 20 249 -13 1039 256 63 79 chr3 153468202 153468647 -64568511 - MLT1J LTR MaLR -73 438 1 1926 89 30 4 chr3 153468650 153468921 -64568237 + MER84 LTR ERVI 1 278 -229 876 183 70 32 chr3 153468923 153468970 -64568188 - MER34B LTR ERV1 -326 239 195 4900 152 56 10 chr3 153468970 153469834 -64567324 - MER4D LTR ERV1 0 903 1 876 183 70 32 chr3 153469834 153469972 -64567186 - MER34B LTR ERV1 -370 195 47 1612 144 66 12 chr3 153470313 153470570 -64566588 + MER57B LTR ERV1 1 271 -163 2905 67 103 0 chr3 153470574 153470980 -64566178 + LTR7 LTR ERV1 1 448 -2 19938 107 7 34 chr3 153470982 153474060 -64563098 + HERVH LTR ERV1 1 2995 -4718 5718 106 25 2 chr3 153474039 153474873 -64562285 + HERVH LTR ERV1 3140 3992 -3721 * 1215 109 49 0 chr3 153474876 153475060 -64562098 + HERVH LTR ERV1 4488 4680 -3033 * 15079 67 1 4 chr3 153475046 153476997 -64560161 + HERVH LTR ERV1 5769 7713 0 2935 64 103 0 chr3 153476997 153477403 -64559755 + LTR7 LTR ERV1 1 448 -2 941 126 19 6 chr3 153477408 153477567 -64559591 + MER57B LTR ERV1 274 434 0 4248 131 7 48 chr3 153477567 153478282 -64558876 + LTR8 LTR ERV1 6 691 0 827 200 68 63 chr3 153478726 153478916 -64558242 + MER58A DNA MER1_type 1 191 -33 21 36 0 0 chr3 153479054 153479082 -64558076 + AT_rich Low_complexity Low_complexity 1 28 0 1856 259 31 27 chr3 153479112 153479698 -64557460 - L1ME3 LINE L1 -31 6131 5544 1841 131 3 0 chr3 153480320 153480664 -64556494 - AluSx SINE Alu 0 345 1 226 266 105 65 chr3 153480810 153480844 -64556314 - L2 LINE L2 -952 2362 2331 2166 155 22 19 chr3 153480844 153481205 -64555953 - MLT1A1 LTR MaLR -3 362 1 226 266 105 65 chr3 153481205 153481294 -64555864 - L2 LINE L2 -983 2331 2234 236 256 26 13 chr3 153481830 153481908 -64555250 + L2 LINE L2 3235 3313 0 242 208 21 0 chr3 153481917 153481965 -64555193 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 365 222 41 0 chr3 153481979 153482150 -64555008 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 806 289 184 8 chr3 153483097 153483601 -64553557 + L2 LINE L2 2687 3285 -28 2439 229 45 11 chr3 153483601 153484172 -64552986 - MLT1E LTR MaLR 0 593 3 806 289 184 8 chr3 153484172 153484199 -64552959 + L2 LINE L2 3285 3306 -7 180 299 45 15 chr3 153484922 153484989 -64552169 - L2 LINE L2 -4 3268 3200 186 310 0 28 chr3 153485217 153485288 -64551870 + MIR SINE MIR 81 149 -113 499 247 96 0 chr3 153486070 153486216 -64550942 + MER96 DNA MER1_type? 14 173 -2 807 123 16 0 chr3 153486775 153486897 -64550261 + MER31A LTR ERV1 362 485 0 532 319 71 4 chr3 153487221 153487447 -64549711 + MIR SINE MIR 22 262 0 196 143 71 36 chr3 153487710 153487766 -64549392 + L2 LINE L2 3033 3090 -182 2298 260 86 37 chr3 153488381 153488874 -64548284 + L1ME4a LINE L1 507 975 -5421 1221 230 49 7 chr3 153488874 153489161 -64547997 - AluJb SINE Alu -11 301 3 2298 260 86 37 chr3 153489161 153489683 -64547475 + L1ME4a LINE L1 975 1571 -4825 801 197 26 13 chr3 153489684 153489836 -64547322 + MER7C DNA MER2_type 1 154 -448 6787 217 35 29 chr3 153489841 153492331 -64544827 + L1ME4a LINE L1 3563 6062 -173 301 358 159 15 chr3 153492338 153492609 -64544549 - L2 LINE L2 -759 2555 2246 304 243 45 52 chr3 153492831 153492957 -64544201 + MIR SINE MIR 2 116 -92 239 295 0 0 chr3 153493212 153493273 -64543885 - L2 LINE L2 0 3313 3253 264 263 0 20 chr3 153493924 153494023 -64543135 + L1ME4a LINE L1 6094 6190 0 789 221 31 111 chr3 153494750 153495075 -64542083 - MLT1K LTR MaLR 0 588 290 269 254 127 40 chr3 153495848 153495974 -64541184 + MLT1K LTR MaLR 448 584 -4 23 97 0 0 chr3 153497424 153497496 -64539662 + GC_rich Low_complexity Low_complexity 1 72 0 208 253 11 81 chr3 153497814 153498025 -64539133 + C-rich Low_complexity Low_complexity 1 196 0 2275 71 17 0 chr3 153498862 153499159 -64537999 + AluSp SINE Alu 4 305 -8 841 270 48 12 chr3 153503065 153503317 -64533841 + MIR SINE MIR 2 262 0 2551 127 28 46 chr3 153504266 153504700 -64532458 - Tigger2a DNA MER2_type -2 432 7 401 353 45 6 chr3 153505476 153505632 -64531526 + L2 LINE L2 3109 3270 -2 315 241 68 38 chr3 153505649 153505782 -64531376 - MLT1L LTR MaLR -2 613 477 228 191 24 0 chr3 153505855 153505897 -64531261 - MLT1L LTR MaLR -368 247 205 696 256 123 23 chr3 153505966 153506318 -64530840 - MLT1J2 LTR MaLR -43 403 1 333 265 143 52 chr3 153507107 153507337 -64529821 - L2 LINE L2 -160 3112 2862 534 216 9 9 chr3 153508515 153508626 -64528532 + L2 LINE L2 3186 3296 -17 189 0 0 0 chr3 153508627 153508648 -64528510 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 269 204 0 0 chr3 153508654 153508703 -64528455 - MIR SINE MIR -124 138 90 254 150 0 17 chr3 153509608 153509668 -64527490 - L1ME4a LINE L1 -2 6119 6061 610 321 101 28 chr3 153510283 153510707 -64526451 - L1MC4a LINE L1 -1911 5897 5443 1910 112 3 56 chr3 153510719 153511041 -64526117 - AluSq SINE Alu -8 305 1 271 325 17 26 chr3 153511628 153511745 -64525413 + MIR3 SINE MIR 5 120 -88 231 310 10 50 chr3 153511792 153511892 -64525266 + L3 LINE CR1 1323 1418 -159 205 265 105 114 chr3 153511951 153512170 -64524988 - L2 LINE L2 -85 3228 3012 536 237 0 25 chr3 153512307 153512425 -64524733 - L2 LINE L2 0 3313 3199 283 250 216 20 chr3 153512426 153512574 -64524584 - MLT1G LTR MaLR -13 577 366 2039 116 6 31 chr3 153513686 153514004 -64523154 - AluSx SINE Alu -2 310 1 318 298 71 0 chr3 153514172 153514256 -64522902 + L1MC4 LINE L1 6614 6703 -1339 213 208 0 42 chr3 153514256 153514304 -64522854 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 302 326 0 22 chr3 153514304 153514396 -64522762 - L1MC4 LINE L1 -1339 6703 6614 208 245 41 0 chr3 153514396 153514445 -64522713 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 306 216 0 118 chr3 153514446 153514548 -64522610 - L1MC4 LINE L1 -1339 6703 6614 201 39 0 0 chr3 153514569 153514595 -64522563 + (TG)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr3 153515504 153515525 -64521633 + AT_rich Low_complexity Low_complexity 1 21 0 903 273 156 29 chr3 153516069 153516582 -64520576 + MLT1L LTR MaLR 38 615 0 760 263 126 54 chr3 153516805 153517266 -64519892 - MLT1J LTR MaLR -17 494 1 290 241 84 12 chr3 153517395 153517478 -64519680 + MIR3 SINE MIR 108 196 -12 396 322 14 28 chr3 153517597 153517740 -64519418 - MIR SINE MIR -8 254 114 2425 161 42 0 chr3 153517958 153518367 -64518791 - MSTB LTR MaLR 0 426 1 369 258 23 31 chr3 153519396 153519524 -64517634 - L1MC5 LINE L1 -60 7901 7775 220 91 76 0 chr3 153519524 153519590 -64517568 + (TA)n Simple_repeat Simple_repeat 2 72 0 1917 146 0 3 chr3 153519591 153519886 -64517272 - AluSx SINE Alu -18 294 1 328 239 43 51 chr3 153519957 153520074 -64517084 + L2 LINE L2 3155 3270 -2 333 291 14 50 chr3 153521941 153522082 -64515076 - MIR SINE MIR -113 149 14 281 303 0 0 chr3 153522173 153522239 -64514919 + (CA)n Simple_repeat Simple_repeat 2 67 0 436 269 62 58 chr3 153522910 153523118 -64514040 - MLT1H LTR MaLR -223 326 118 2120 91 34 7 chr3 153523303 153523600 -64513558 + AluSq SINE Alu 1 305 -8 183 156 0 0 chr3 153526795 153526827 -64510331 + CT-rich Low_complexity Low_complexity 2 33 0 1189 176 4 53 chr3 153526828 153527072 -64510086 - AluJb SINE Alu -20 292 61 351 100 0 0 chr3 153527251 153527301 -64509857 - Alu SINE Alu -251 50 1 405 333 61 0 chr3 153527327 153527474 -64509684 + L2 LINE L2 3117 3272 0 207 304 58 0 chr3 153529432 153529501 -64507657 + MIR SINE MIR 111 183 -79 469 308 156 9 chr3 153529930 153530141 -64507017 + L3 LINE CR1 1336 1577 0 1257 221 8 20 chr3 153530341 153530594 -64506564 + MIR SINE MIR 8 257 -5 387 314 108 14 chr3 153530618 153530841 -64506317 - L2 LINE L2 -164 3108 2865 411 240 20 135 chr3 153530944 153531144 -64506014 + MER5A DNA MER1_type 11 187 -2 484 252 66 62 chr3 153531834 153532076 -64505082 + Charlie8 DNA MER1_type 36 278 -2139 412 181 0 19 chr3 153532302 153532407 -64504751 + GA-rich Low_complexity Low_complexity 1 103 0 465 182 0 0 chr3 153533495 153533594 -64503564 + CT-rich Low_complexity Low_complexity 4 102 0 257 284 0 20 chr3 153533633 153533735 -64503423 + L1ME LINE L1 5658 5757 -364 22 0 0 0 chr3 153533793 153533815 -64503343 + AT_rich Low_complexity Low_complexity 1 22 0 351 0 0 0 chr3 153533842 153533881 -64503277 + (GA)n Simple_repeat Simple_repeat 1 39 0 324 0 0 0 chr3 153533880 153533916 -64503242 + (TG)n Simple_repeat Simple_repeat 2 37 0 * 264 214 23 13 chr3 153535028 153535142 -64502016 + HAL1b LINE L1 1249 1342 -6 186 43 0 0 chr3 153536559 153536582 -64500576 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 915 183 0 0 chr3 153536583 153536736 -64500422 - FRAM SINE Alu -31 145 1 565 255 39 7 chr3 153536779 153536932 -64500226 - MIR SINE MIR -56 206 49 3237 81 2 25 chr3 153538210 153538653 -64498505 - MLT2A1 LTR ERVL -11 433 1 355 231 44 11 chr3 153538808 153538899 -64498259 + L2 LINE L2 3160 3253 -60 202 326 98 70 chr3 153540289 153540688 -64496470 - L2 LINE L2 -9 3263 2854 2026 156 26 0 chr3 153541571 153541910 -64495248 + MER7A DNA MER2_type 1 346 0 715 282 119 54 chr3 153542043 153542579 -64494579 - L1MC4a LINE L1 -1840 5968 5398 367 268 93 21 chr3 153542586 153542860 -64494298 - L1MC4a LINE L1 -748 5398 5145 271 250 165 89 chr3 153543149 153543397 -64493761 - MLT1K LTR MaLR -237 351 85 228 340 173 20 chr3 153544248 153544445 -64492713 + MIR SINE MIR 35 261 -1 204 333 0 0 chr3 153545313 153545376 -64491782 - MIR SINE MIR -65 143 81 254 289 50 41 chr3 153545516 153545637 -64491521 + MIR SINE MIR 93 214 -48 396 350 27 11 chr3 153546878 153547064 -64490094 - L2 LINE L2 -277 3036 2848 230 245 0 0 chr3 153547214 153547267 -64489891 + GA-rich Low_complexity Low_complexity 3 55 0 1390 246 38 52 chr3 153547748 153548153 -64489005 + L2 LINE L2 2757 3147 -166 282 29 0 0 chr3 153548153 153548188 -64488970 + (CA)n Simple_repeat Simple_repeat 2 36 0 1390 246 38 52 chr3 153548188 153548353 -64488805 + L2 LINE L2 3147 3313 0 545 339 122 39 chr3 153548349 153548647 -64488511 - L2 LINE L2 -713 2601 2329 * 2148 81 0 55 chr3 153548647 153548955 -64488203 - AluSc SINE Alu -18 291 1 545 339 122 39 chr3 153548955 153549290 -64487868 - L2 LINE L2 -985 2329 1916 396 252 38 46 chr3 153549808 153549939 -64487219 - MLT1J LTR MaLR -57 454 325 1224 155 10 0 chr3 153550209 153550402 -64486756 + MER2 DNA MER2_type 16 210 -135 265 239 84 14 chr3 153550431 153550502 -64486656 + MER2 DNA MER2_type 269 344 -1 373 239 43 0 chr3 153550626 153550718 -64486440 - L2 LINE L2 -4 3309 3214 1999 137 16 0 chr3 153550808 153551115 -64486043 - AluJo SINE Alu 0 312 1 185 41 41 61 chr3 153551170 153551219 -64485939 + (CAAAAA)n Simple_repeat Simple_repeat 1 48 0 273 284 148 52 chr3 153552176 153552560 -64484598 - L2 LINE L2 -349 2965 2545 228 316 29 35 chr3 153553461 153553635 -64483523 - L1ME LINE L1 -206 5915 5743 1464 238 163 38 chr3 153554183 153554285 -64482873 - MER20B DNA MER1_type -4 779 691 1751 162 0 7 chr3 153554285 153554569 -64482589 + AluJb SINE Alu 1 282 -30 216 0 0 0 chr3 153554569 153554593 -64482565 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 1464 238 163 38 chr3 153554593 153555181 -64481977 - MER20B DNA MER1_type -91 692 1 255 292 80 18 chr3 153556005 153556118 -64481040 + MIR SINE MIR 131 250 -12 478 190 256 72 chr3 153556361 153556556 -64480602 + MIR SINE MIR 12 242 -20 417 259 110 41 chr3 153557057 153557347 -64479811 - L1MC4a LINE L1 -1667 6141 5832 988 191 50 55 chr3 153559308 153559528 -64477630 - MER58A DNA MER1_type -4 220 2 21 0 0 0 chr3 153560417 153560438 -64476720 + AT_rich Low_complexity Low_complexity 1 21 0 297 186 0 17 chr3 153561054 153561113 -64476045 - MLT1A1 LTR MaLR -307 58 1 2008 85 58 7 chr3 153561375 153561501 -64475657 + AluY SINE Alu 1 119 -192 276 30 0 0 chr3 153561501 153561534 -64475624 + (TA)n Simple_repeat Simple_repeat 2 34 0 2008 85 58 7 chr3 153561534 153561702 -64475456 + AluY SINE Alu 119 310 -1 218 306 9 36 chr3 153561744 153561855 -64475303 + (CAGT)n Simple_repeat Simple_repeat 4 111 0 540 276 92 50 chr3 153564368 153564502 -64472656 + MIR SINE MIR 6 156 -106 1753 170 6 6 chr3 153564502 153564813 -64472345 + AluJo SINE Alu 1 311 -1 540 276 92 50 chr3 153564813 153564917 -64472241 + MIR SINE MIR 156 254 -8 805 142 23 209 chr3 153564999 153565171 -64471987 - MLT1A2 LTR MaLR -49 342 173 412 225 72 124 chr3 153565774 153565983 -64471175 + MIR SINE MIR 53 250 -12 932 222 227 11 chr3 153566212 153566564 -64470594 - LTR16A LTR ERVL -5 445 18 281 307 45 39 chr3 153566601 153566780 -64470378 + MLT1J LTR MaLR 1 180 -331 317 268 78 59 chr3 153566898 153567051 -64470107 + MIR SINE MIR 2 157 -105 653 174 0 17 chr3 153567080 153567195 -64469963 - MER81 DNA DNA -1 113 1 1531 130 0 28 chr3 153567604 153567851 -64469307 + L1PA15 LINE L1 5926 6165 0 2064 289 38 63 chr3 153567854 153568960 -64468198 - L2 LINE L2 -78 3235 2164 197 400 0 0 chr3 153568965 153569040 -64468118 - L2 LINE L2 -20 3252 3178 339 240 8 91 chr3 153569107 153569228 -64467930 - MIR3 SINE MIR -6 202 92 779 187 15 20 chr3 153569466 153569643 -64467515 + L1M4 LINE L1 5195 5372 -774 2319 91 0 0 chr3 153569643 153569951 -64467207 + AluY SINE Alu 1 308 -3 779 187 15 20 chr3 153569951 153569971 -64467187 + L1M4 LINE L1 5372 5391 -755 518 43 0 14 chr3 153569971 153570041 -64467117 + (GAAA)n Simple_repeat Simple_repeat 3 71 0 575 133 6 10 chr3 153570041 153570141 -64467017 + L1ME LINE L1 5353 5452 -718 293 247 35 12 chr3 153572475 153572560 -64464598 + MLT1A1 LTR MaLR 39 125 -442 3226 158 20 5 chr3 153572573 153573130 -64464028 + L1MC3 LINE L1 7220 7784 -1 243 283 173 59 chr3 153573449 153573993 -64463165 + L2 LINE L2 2140 2745 -569 219 298 53 61 chr3 153574479 153574593 -64462565 + MIR SINE MIR 13 125 -137 2496 125 96 0 chr3 153574616 153575000 -64462158 + MSTC LTR MaLR 1 421 -7 1128 80 11 6 chr3 153578337 153578512 -64458646 + (TTCC)n Simple_repeat Simple_repeat 3 178 0 305 179 368 0 chr3 153578925 153579020 -64458138 - MER5A DNA MER1_type -3 186 57 339 259 29 50 chr3 153579169 153579308 -64457850 + MIR SINE MIR 117 252 -10 509 226 124 28 chr3 153579754 153579931 -64457227 + L2 LINE L2 3119 3312 -1 893 163 0 0 chr3 153580501 153580636 -64456522 - AluJo SINE Alu -176 136 2 482 227 78 49 chr3 153580686 153580893 -64456265 - MER20B DNA MER1_type -3 216 2 913 187 59 64 chr3 153581583 153581629 -64455529 + MLT1A1 LTR MaLR 164 209 -156 2400 67 7 10 chr3 153581629 153581926 -64455232 - AluY SINE Alu -15 296 1 913 187 59 64 chr3 153581926 153582082 -64455076 + MLT1A1 LTR MaLR 209 365 0 4011 128 57 29 chr3 153583736 153584433 -64452725 - LTR62 LTR ERVK -2 717 1 1902 176 67 20 chr3 153584961 153585365 -64451793 + MER66B LTR ERV1 64 486 0 2554 176 61 72 chr3 153585497 153585971 -64451187 + Charlie1a DNA MER1_type 24 491 -2270 3832 58 4 0 chr3 153585971 153586450 -64450708 - L1PA8 LINE L1 -2 6170 5690 2554 176 61 72 chr3 153586450 153586618 -64450540 + Charlie1a DNA MER1_type 491 659 -796 1335 184 109 11 chr3 153586820 153587086 -64450072 - AluJo SINE Alu -17 295 4 1397 139 40 0 chr3 153587549 153587772 -64449386 + MER46A DNA MER2_type 4 235 -1 1031 174 0 0 chr3 153587784 153587951 -64449207 - FRAM SINE Alu -10 166 1 314 281 12 0 chr3 153587999 153588081 -64449077 - MLT1L LTR MaLR -532 83 1 317 288 69 78 chr3 153588507 153588567 -64448591 + L1P5 LINE L1 5281 5340 -816 2344 99 51 20 chr3 153588567 153588920 -64448238 - THE1B LTR MaLR 0 364 1 12232 86 5 1 chr3 153588920 153590493 -64446665 - THE1B-int LTR MaLR 0 1580 2 2252 113 54 23 chr3 153590494 153590847 -64446311 - THE1B LTR MaLR 0 364 1 317 288 69 78 chr3 153590847 153591089 -64446069 + L1P5 LINE L1 5338 5583 -573 2178 166 10 50 chr3 153591947 153592345 -64444813 + MLT1B LTR MaLR 1 382 -8 355 286 6 82 chr3 153592879 153593061 -64444097 + L2 LINE L2 3019 3186 -86 2005 139 7 0 chr3 153593103 153593390 -64443768 + AluSx SINE Alu 1 289 -23 265 183 305 0 chr3 153594375 153594457 -64442701 + L2 LINE L2 3199 3305 -8 314 257 138 0 chr3 153595172 153595281 -64441877 + L2 LINE L2 3189 3312 -1 42043 52 18 3 chr3 153595573 153601623 -64435535 - L1PA5 LINE L1 0 6154 12 2179 90 13 23 chr3 153601910 153602211 -64434947 - AluSp SINE Alu -15 298 1 1583 148 93 31 chr3 153603062 153603353 -64433805 + AluJb SINE Alu 1 309 -3 303 250 50 20 chr3 153603678 153603778 -64433380 + MER81 DNA DNA 1 103 -11 198 0 0 0 chr3 153604274 153604296 -64432862 + (T)n Simple_repeat Simple_repeat 1 22 0 2285 181 32 44 chr3 153605679 153605908 -64431250 - MLT1D LTR MaLR -7 498 268 1937 166 0 16 chr3 153605908 153606222 -64430936 - AluJb SINE Alu -3 309 1 2285 181 32 44 chr3 153606222 153606496 -64430662 - MLT1D LTR MaLR -237 268 1 333 274 0 0 chr3 153607392 153607476 -64429682 - MER20B DNA MER1_type -693 90 7 431 228 168 0 chr3 153607701 153607850 -64429308 - MER5B DNA MER1_type 0 178 5 306 0 0 0 chr3 153608331 153608365 -64428793 + (TG)n Simple_repeat Simple_repeat 1 34 0 594 257 96 50 chr3 153609058 153609529 -64427629 + LTR33A LTR ERVL 2 523 0 337 244 81 52 chr3 153610283 153610455 -64426703 + HAL1 LINE L1 5 181 -2326 186 43 0 0 chr3 153611007 153611030 -64426128 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 233 293 93 0 chr3 153611034 153611109 -64426049 + HAL1 LINE L1 788 869 -1638 1232 131 0 6 chr3 153611120 153611295 -64425863 + AluSg/x SINE Alu 123 296 -13 558 220 166 48 chr3 153611391 153611704 -64425454 + HAL1 LINE L1 978 1327 -1180 262 211 97 61 chr3 153611843 153611957 -64425201 - HAL1 LINE L1 -354 2153 2036 465 289 96 27 chr3 153612105 153612365 -64424793 - HAL1 LINE L1 -744 1763 1486 366 270 178 0 chr3 153612432 153612595 -64424563 + HAL1 LINE L1 2312 2503 -4 1387 143 73 62 chr3 153613020 153613292 -64423866 + AluJo SINE Alu 30 304 -8 320 218 104 62 chr3 153613632 153613835 -64423323 - L2 LINE L2 -85 3228 2974 186 103 0 0 chr3 153614520 153614549 -64422609 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 215 321 12 0 chr3 153614715 153614799 -64422359 + CT-rich Low_complexity Low_complexity 1 85 0 222 276 0 17 chr3 153615084 153615142 -64422016 + GA-rich Low_complexity Low_complexity 4 60 0 192 77 0 0 chr3 153615255 153615281 -64421877 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 273 314 93 0 chr3 153617866 153617984 -64419174 + MER91A DNA MER1_type 68 196 0 288 269 103 22 chr3 153618581 153618855 -64418303 - L1MC/D LINE L1 -650 5518 5263 1596 120 165 0 chr3 153619072 153619338 -64417820 - AluSx SINE Alu -2 310 1 1420 174 0 81 chr3 153620083 153620417 -64416741 - L1MB8 LINE L1 -6 6172 5866 979 279 114 8 chr3 153620568 153620944 -64416214 - MLT1L LTR MaLR -4 611 196 260 169 0 68 chr3 153621016 153621075 -64416083 - MLT1L LTR MaLR -560 55 1 2056 149 0 0 chr3 153621203 153621504 -64415654 + AluJo SINE Alu 1 301 -11 646 241 92 16 chr3 153621504 153621753 -64415405 + MER113 DNA MER1_type? 91 358 -163 277 197 14 28 chr3 153621935 153622006 -64415152 - MER116 DNA Mariner -10 70 1 24 0 0 0 chr3 153622062 153622086 -64415072 + AT_rich Low_complexity Low_complexity 1 24 0 198 272 40 80 chr3 153622195 153622235 -64414923 + MIR3 SINE MIR 81 121 -87 1008 191 48 9 chr3 153622235 153622445 -64414713 - MER20 DNA MER1_type -1 218 1 198 272 40 80 chr3 153622445 153622529 -64414629 + MIR3 SINE MIR 121 200 -8 260 318 11 0 chr3 153622909 153622997 -64414161 + MIR SINE MIR 29 117 -91 297 196 0 0 chr3 153624030 153624086 -64413072 - MIR SINE MIR -8 254 199 381 309 40 7 chr3 153624493 153624645 -64412513 - MIR SINE MIR -59 203 47 2377 254 13 91 chr3 153624717 153625697 -64411461 + L1 LINE L1 4404 5307 -839 691 108 0 0 chr3 153625700 153625793 -64411365 + AluS SINE Alu 2 94 -219 3139 154 21 33 chr3 153625793 153625960 -64411198 + L1MB8 LINE L1 5146 5313 -871 2337 96 3 0 chr3 153625960 153626262 -64410896 + AluSp SINE Alu 11 313 0 3139 154 21 33 chr3 153626262 153626792 -64410366 + L1MB8 LINE L1 5313 5842 -342 2587 133 65 0 chr3 153626792 153627191 -64409967 - MSTC LTR MaLR 0 428 4 1107 228 8 11 chr3 153627191 153627453 -64409705 + L1MB8 LINE L1 5905 6165 -13 228 247 0 65 chr3 153627465 153627542 -64409616 - L2 LINE L2 -1481 1833 1762 199 293 61 10 chr3 153629018 153629117 -64408041 - L3 LINE CR1 -370 1207 1104 526 245 59 64 chr3 153629136 153629340 -64407818 + MIR SINE MIR 8 210 -52 1397 210 88 20 chr3 153631642 153631994 -64405164 - MLT1J1 LTR MaLR -8 438 63 2390 107 0 0 chr3 153632596 153632905 -64404253 - AluSc SINE Alu 0 309 1 2076 112 46 11 chr3 153632912 153633197 -64403961 - AluJb SINE Alu -17 295 1 2185 109 3 13 chr3 153633921 153634223 -64402935 + AluSq SINE Alu 1 299 -14 1769 152 42 0 chr3 153635402 153635685 -64401473 + AluSx SINE Alu 1 295 -17 462 297 103 0 chr3 153636206 153636391 -64400767 - L1ME4a LINE L1 -200 5921 5718 229 309 71 0 chr3 153636510 153636594 -64400564 + MER5A DNA MER1_type 100 189 0 251 315 0 0 chr3 153636784 153636876 -64400282 - MIR SINE MIR -62 146 55 254 209 71 51 chr3 153638964 153639458 -64397700 + L1MD3 LINE L1 5450 5933 -2062 1767 152 34 10 chr3 153639458 153639755 -64397403 + AluJo SINE Alu 1 304 -8 254 209 71 51 chr3 153639755 153640154 -64397004 + L1MD3 LINE L1 5933 7994 -1 209 184 0 0 chr3 153643392 153643430 -64393728 - L3 LINE CR1 -2 1575 1538 617 198 52 0 chr3 153643663 153643779 -64393379 + FLAM_A SINE Alu 1 122 -11 233 299 26 0 chr3 153643970 153644047 -64393111 + MIR SINE MIR 71 149 -113 196 338 26 26 chr3 153644478 153644555 -64392603 + MIR SINE MIR 15 91 -171 318 50 0 0 chr3 153647204 153647244 -64389914 + (TG)n Simple_repeat Simple_repeat 2 41 0 22 0 0 0 chr3 153647287 153647309 -64389849 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 153649657 153649685 -64387473 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 153649821 153649843 -64387315 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr3 153651971 153652013 -64385145 + AT_rich Low_complexity Low_complexity 1 42 0 225 150 50 0 chr3 153652277 153652317 -64384841 - L2 LINE L2 -7 3265 3224 1949 148 0 28 chr3 153652427 153652745 -64384413 + AluJo SINE Alu 1 309 -3 245 250 174 11 chr3 153653879 153653971 -64383187 - L2 LINE L2 -16 3256 3150 2381 92 0 22 chr3 153655555 153655870 -64381288 - AluSc SINE Alu -1 308 1 219 217 0 0 chr3 153660502 153660548 -64376610 + L2 LINE L2 3211 3256 -16 463 234 0 0 chr3 153660947 153661041 -64376117 + MER5A DNA MER1_type 14 107 -82 1410 208 99 21 chr3 153662091 153662523 -64374635 + MLT1C LTR MaLR 2 467 0 193 316 105 15 chr3 153662528 153662661 -64374497 - MER5A DNA MER1_type -10 179 35 * 260 246 110 8 chr3 153662545 153662663 -64374495 + MER5A DNA MER1_type 39 168 -21 423 282 13 67 chr3 153663215 153663242 -64373916 + MER5B DNA MER1_type 35 62 -116 2201 105 10 3 chr3 153663242 153663547 -64373611 + AluSc SINE Alu 1 307 -2 423 282 13 67 chr3 153663547 153663668 -64373490 + MER5B DNA MER1_type 62 175 -3 1810 128 203 11 chr3 153664498 153664857 -64372301 - MSTA LTR MaLR 0 428 1 182 376 18 9 chr3 153665029 153665138 -64372020 + MIR SINE MIR 33 142 -66 2299 89 3 3 chr3 153665212 153665503 -64371655 + AluSp SINE Alu 1 291 -22 441 182 126 14 chr3 153666554 153666697 -64370461 - MIR SINE MIR 0 262 104 803 159 0 23 chr3 153666798 153666930 -64370228 - FLAM_C SINE Alu 0 133 5 216 0 0 0 chr3 153667002 153667026 -64370132 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 28 0 0 0 chr3 153668374 153668402 -64368756 + AT_rich Low_complexity Low_complexity 1 28 0 380 287 64 25 chr3 153668890 153669047 -64368111 - MIR SINE MIR -53 209 47 1804 157 3 13 chr3 153669749 153670049 -64367109 + AluJo SINE Alu 6 302 -10 264 59 0 0 chr3 153670140 153670174 -64366984 + (TG)n Simple_repeat Simple_repeat 1 34 0 188 278 43 96 chr3 153670216 153670331 -64366827 - L2 LINE L2 -12 3260 3152 625 255 113 21 chr3 153670417 153670656 -64366502 - MIR SINE MIR 0 262 2 316 263 38 45 chr3 153670985 153671118 -64366040 - MER91A DNA MER1_type 0 196 65 581 294 113 20 chr3 153671315 153671519 -64365639 + MIR SINE MIR 32 254 -8 396 288 278 8 chr3 153672665 153673057 -64364101 - L2 LINE L2 -1 3312 2815 187 173 120 0 chr3 153673877 153673943 -64363215 + MIR SINE MIR 94 145 -63 2128 78 46 11 chr3 153674001 153674283 -64362875 - AluSq SINE Alu -21 292 1 380 292 60 56 chr3 153674521 153674737 -64362421 - L2 LINE L2 -22 3291 3075 260 243 129 77 chr3 153675001 153675442 -64361716 - L2 LINE L2 -2 3311 2848 337 250 11 11 chr3 153675796 153675884 -64361274 - MIR SINE MIR -34 228 141 466 176 194 29 chr3 153675896 153676066 -64361092 - MLT1F LTR MaLR -4 538 341 251 261 29 0 chr3 153676068 153676137 -64361021 - MLT1G LTR MaLR -481 109 39 392 252 29 0 chr3 153676213 153676316 -64360842 - MIR SINE MIR -130 132 27 435 280 14 7 chr3 153677303 153677446 -64359712 + MER115 DNA AcHobo 57 200 -493 1388 243 69 20 chr3 153677478 153677869 -64359289 + MER115 DNA AcHobo 279 688 -5 486 254 9 0 chr3 153678223 153678333 -64358825 + MER81 DNA DNA 4 114 0 356 271 0 62 chr3 153679025 153679154 -64358004 - MLT1K LTR MaLR -105 483 363 193 29 59 0 chr3 153680075 153680109 -64357049 + (TA)n Simple_repeat Simple_repeat 2 37 0 412 286 38 58 chr3 153680136 153680331 -64356827 - L1MC4a LINE L1 -202 5919 5744 1949 147 0 3 chr3 153681424 153681716 -64355442 - AluJo SINE Alu -20 292 2 1474 110 85 8 chr3 153682487 153682757 -64354401 - L1MA4 LINE L1 -112 6188 5900 292 245 98 20 chr3 153683568 153683670 -64353488 - HsTC2 DNA Tc2 -331 1567 1282 180 185 56 37 chr3 153683706 153683760 -64353398 + L2 LINE L2 3247 3301 -12 450 0 0 0 chr3 153683941 153683991 -64353167 + (TGGA)n Simple_repeat Simple_repeat 4 53 0 2137 112 7 0 chr3 153684877 153685162 -64351996 + AluSx SINE Alu 1 287 -25 208 121 0 0 chr3 153685162 153685195 -64351963 + (CTAA)n Simple_repeat Simple_repeat 2 34 0 261 0 0 0 chr3 153685659 153685688 -64351470 + (GA)n Simple_repeat Simple_repeat 2 30 0 2703 91 13 11 chr3 153686118 153686492 -64350666 - THE1C LTR MaLR 0 375 1 254 344 6 25 chr3 153687310 153687470 -64349688 + GA-rich Low_complexity Low_complexity 2 158 0 254 270 18 27 chr3 153687548 153687659 -64349499 + GA-rich Low_complexity Low_complexity 3 112 0 74 24 0 0 chr3 153687663 153687746 -64349412 + GC_rich Low_complexity Low_complexity 1 83 0 297 100 0 0 chr3 153687746 153687796 -64349362 + (G)n Simple_repeat Simple_repeat 1 50 0 238 220 140 20 chr3 153688271 153688371 -64348787 - MIR SINE MIR -76 132 21 373 203 0 0 chr3 153688417 153688476 -64348682 - MER58 DNA MER1_type 0 2420 2362 1388 144 93 52 chr3 153688480 153688907 -64348251 - LTR54B LTR ERV1 -6 492 1 518 169 81 7 chr3 153688907 153689043 -64348115 - MER58 DNA MER1_type -55 2365 2220 934 196 30 30 chr3 153689053 153689145 -64348013 - MER58 DNA MER1_type -2201 219 128 15496 118 39 2 chr3 153689145 153691471 -64345687 - Tigger1 DNA MER2_type -2 2416 5 934 196 30 30 chr3 153691471 153691577 -64345581 - MER58 DNA MER1_type -2291 129 21 240 297 77 11 chr3 153691618 153691709 -64345449 + MER102a DNA MER1_type 9 105 -225 254 216 171 45 chr3 153691940 153692051 -64345107 - L1MC5 LINE L1 -37 7924 7800 817 219 125 56 chr3 153692254 153692701 -64344457 - L1MC5 LINE L1 -182 7779 7302 380 236 128 124 chr3 153692701 153692959 -64344199 + MER102a DNA MER1_type 71 329 -1 198 0 0 0 chr3 153693554 153693576 -64343582 + (T)n Simple_repeat Simple_repeat 1 22 0 735 230 58 35 chr3 153694245 153694471 -64342687 - MIR SINE MIR -1 261 31 21 36 0 0 chr3 153695176 153695204 -64341954 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr3 153695865 153695894 -64341264 + GC_rich Low_complexity Low_complexity 1 29 0 204 59 0 59 chr3 153696040 153696074 -64341084 + (CGGGG)n Simple_repeat Simple_repeat 5 36 0 27 29 0 0 chr3 153696233 153696267 -64340891 + GC_rich Low_complexity Low_complexity 1 34 0 505 201 31 100 chr3 153696941 153697170 -64339988 - MER112 DNA MER1_type -7 253 41 493 323 44 32 chr3 153697182 153697430 -64339728 + MIR SINE MIR 12 262 0 186 286 83 12 chr3 153697798 153697882 -64339276 + MIR SINE MIR 40 129 -79 226 341 33 0 chr3 153697909 153698000 -64339158 - MIR SINE MIR -84 124 31 296 237 9 88 chr3 153698167 153698281 -64338877 - MIR SINE MIR 0 262 158 184 359 68 10 chr3 153700837 153700940 -64336218 + MIR SINE MIR 31 139 -69 227 284 30 15 chr3 153701177 153701244 -64335914 - MER5A DNA MER1_type 0 189 122 2221 122 0 3 chr3 153701831 153702135 -64335023 + AluSx SINE Alu 1 303 -9 2406 88 0 7 chr3 153702603 153702909 -64334249 - AluSq SINE Alu -5 308 5 214 244 0 0 chr3 153703132 153703177 -64333981 - L2 LINE L2 -4 3309 3265 369 256 95 7 chr3 153703931 153704068 -64333090 - MIR3 SINE MIR -31 177 29 2570 60 0 10 chr3 153706302 153706616 -64330542 + AluY SINE Alu 1 311 0 1022 181 84 0 chr3 153706802 153707039 -64330119 + L1MB7 LINE L1 5092 5348 -798 316 216 40 27 chr3 153707056 153707130 -64330028 + L1PB4 LINE L1 6055 6129 -27 * 2497 169 185 60 chr3 153707129 153707797 -64329361 + L1MB7 LINE L1 5343 6115 -69 2354 85 3 31 chr3 153707797 153708115 -64329043 + AluSq SINE Alu 1 309 -4 2497 169 185 60 chr3 153708115 153708193 -64328965 + L1MB7 LINE L1 6115 6182 -2 22 0 0 0 chr3 153708293 153708315 -64328843 + AT_rich Low_complexity Low_complexity 1 22 0 3985 180 57 9 chr3 153708319 153709761 -64327397 - L1PB4 LINE L1 -16 6140 4628 6599 125 19 29 chr3 153709773 153711131 -64326027 - L1MA4 LINE L1 -5 6295 4942 222 37 0 0 chr3 153711131 153711158 -64326000 + (T)n Simple_repeat Simple_repeat 1 27 0 10476 156 29 33 chr3 153712543 153713294 -64323864 - L1MA4 LINE L1 -1178 4968 4215 180 0 0 0 chr3 153713294 153713314 -64323844 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 10476 156 29 33 chr3 153713314 153714623 -64322535 - L1MA4 LINE L1 -1931 4215 2917 2568 50 0 0 chr3 153715233 153715530 -64321628 - AluY SINE Alu -14 297 1 384 330 35 17 chr3 153715530 153715645 -64321513 - L2 LINE L2 -22 3250 3134 303 175 0 0 chr3 153717073 153717130 -64320028 + A-rich Low_complexity Low_complexity 1 57 0 2259 120 3 0 chr3 153717242 153717550 -64319608 - AluSq SINE Alu -4 309 1 1581 157 41 19 chr3 153718447 153718734 -64318424 + AluJo SINE Alu 11 303 0 524 250 18 0 chr3 153719303 153719596 -64317562 + FLAM_A SINE Alu 1 295 0 510 161 0 0 chr3 153719599 153719692 -64317466 + GA-rich Low_complexity Low_complexity 1 93 0 1082 176 42 28 chr3 153719859 153720075 -64317083 + MER20 DNA MER1_type 1 219 0 23 33 0 0 chr3 153720939 153720969 -64316189 + AT_rich Low_complexity Low_complexity 1 30 0 321 288 24 71 chr3 153722298 153722468 -64314690 + MLT1L LTR MaLR 1 162 -453 302 167 19 0 chr3 153722559 153722613 -64314545 - MADE1 DNA Mariner 0 80 26 840 159 0 14 chr3 153722873 153723018 -64314140 - FLAM_C SINE Alu 0 143 1 1583 169 3 47 chr3 153723223 153723524 -64313634 - AluJo SINE Alu -24 288 1 2292 76 40 7 chr3 153724447 153724748 -64312410 + AluY SINE Alu 1 311 0 263 259 6 141 chr3 153725561 153725689 -64311469 - MIR SINE MIR -25 237 136 1955 138 40 0 chr3 153725689 153725985 -64311173 + AluJb SINE Alu 3 310 -2 263 259 6 141 chr3 153725985 153726026 -64311132 - MIR SINE MIR -126 136 91 183 313 45 0 chr3 153726281 153726348 -64310810 - L2 LINE L2 -932 2382 2313 622 276 118 105 chr3 153727322 153727508 -64309650 - L1M2 LINE L1 -5442 1407 1225 250 68 27 68 chr3 153727508 153727582 -64309576 + (CGGGG)n Simple_repeat Simple_repeat 5 75 0 622 276 118 105 chr3 153727582 153727632 -64309526 - L1M2 LINE L1 -5624 1225 1177 204 245 20 20 chr3 153727632 153727730 -64309428 + (CGG)n Simple_repeat Simple_repeat 1 98 0 622 276 118 105 chr3 153727730 153728482 -64308676 - L1M2 LINE L1 -5672 1177 378 21 0 0 0 chr3 153729266 153729287 -64307871 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr3 153730928 153730950 -64306208 + (A)n Simple_repeat Simple_repeat 1 22 0 431 226 136 73 chr3 153731302 153731479 -64305679 + MIR SINE MIR 5 192 -70 341 308 50 117 chr3 153731783 153732124 -64305034 + L2 LINE L2 2937 3254 -18 381 275 33 0 chr3 153733145 153733236 -64303922 + MIR3 SINE MIR 87 180 -28 196 209 48 114 chr3 153733574 153733679 -64303479 - MIR3 SINE MIR -9 199 102 186 379 163 0 chr3 153733981 153734134 -64303024 - MER5B DNA MER1_type 0 178 1 1302 249 50 69 chr3 153734495 153734992 -64302166 - L1MC4a LINE L1 -1884 5924 5440 2020 90 49 0 chr3 153734992 153735259 -64301899 - AluSc SINE Alu -29 280 1 1302 249 50 69 chr3 153735259 153735383 -64301775 - L1MC4a LINE L1 -2368 5440 5315 890 207 26 65 chr3 153735716 153735948 -64301210 - MIR SINE MIR -34 228 6 553 290 112 14 chr3 153735964 153736556 -64300602 + L1MC4a LINE L1 5255 5913 -209 7378 35 6 10 chr3 153736682 153737928 -64299230 + L1PA5 LINE L1 4913 6154 0 23 68 0 0 chr3 153737973 153738017 -64299141 + AT_rich Low_complexity Low_complexity 1 44 0 1426 163 8 45 chr3 153738216 153738480 -64298678 + AluJo SINE Alu 44 297 -15 329 279 224 17 chr3 153738698 153738877 -64298281 - MIR SINE MIR -6 256 41 222 150 0 0 chr3 153739155 153739195 -64297963 + (CA)n Simple_repeat Simple_repeat 2 41 0 2096 93 32 0 chr3 153740202 153740482 -64296676 - AluSc SINE Alu -20 289 1 414 250 157 21 chr3 153741088 153741228 -64295930 + MIR SINE MIR 98 256 -6 29 0 0 0 chr3 153741443 153741472 -64295686 + AT_rich Low_complexity Low_complexity 1 29 0 285 267 116 14 chr3 153741631 153741777 -64295381 - Charlie8 DNA MER1_type -2254 163 3 459 292 204 9 chr3 153742005 153742221 -64294937 - MIR SINE MIR -2 260 3 1174 168 53 18 chr3 153742560 153742786 -64294372 + MER46A DNA MER2_type 3 236 0 293 281 91 25 chr3 153743624 153743745 -64293413 + MIR SINE MIR 124 252 -10 271 269 8 34 chr3 153743797 153743916 -64293242 + (CATA)n Simple_repeat Simple_repeat 4 119 0 354 260 326 31 chr3 153744152 153744410 -64292748 + L2 LINE L2 2979 3312 -1 1786 253 97 61 chr3 153744745 153745920 -64291238 + L2 LINE L2 2080 3308 -5 329 306 60 92 chr3 153746066 153746347 -64290811 - L2 LINE L2 -340 2974 2703 192 40 0 0 chr3 153746362 153746387 -64290771 + (TG)n Simple_repeat Simple_repeat 2 26 0 2151 137 0 9 chr3 153747224 153747539 -64289619 + AluJb SINE Alu 1 312 0 22 35 0 0 chr3 153747577 153747606 -64289552 + AT_rich Low_complexity Low_complexity 1 29 0 296 319 0 0 chr3 153747911 153748002 -64289156 - LTR67 LTR ERVL -36 521 431 316 284 23 23 chr3 153748391 153748479 -64288679 - LTR67 LTR ERVL -356 201 114 245 197 42 42 chr3 153748419 153748490 -64288668 - MLT1J LTR MaLR -342 169 99 * 1777 153 29 16 chr3 153748965 153749273 -64287885 - AluJo SINE Alu 0 312 1 288 296 176 0 chr3 153750732 153750857 -64286301 - MIR3 SINE MIR -25 183 37 2203 274 187 23 chr3 153751003 153752556 -64284602 - L2 LINE L2 -4 3309 1494 2345 108 0 6 chr3 153753376 153753691 -64283467 + AluSq SINE Alu 1 313 0 23 33 0 0 chr3 153753861 153753891 -64283267 + AT_rich Low_complexity Low_complexity 1 30 0 906 196 97 39 chr3 153754580 153754935 -64282223 + L1ME2 LINE L1 5059 5434 -728 596 195 63 38 chr3 153754951 153755110 -64282048 + L1ME2 LINE L1 5931 6093 -71 * 2227 211 115 12 chr3 153755105 153755766 -64281392 + L1ME2 LINE L1 5443 6332 -2 47 67 0 0 chr3 153755773 153755862 -64281296 + AT_rich Low_complexity Low_complexity 1 89 0 2343 101 0 0 chr3 153756215 153756511 -64280647 + AluSc SINE Alu 1 296 -13 2353 36 0 4 chr3 153756519 153756800 -64280358 + L1PA5 LINE L1 5866 6145 -9 31 96 0 0 chr3 153756800 153756894 -64280264 + AT_rich Low_complexity Low_complexity 1 94 0 198 369 23 80 chr3 153757191 153757367 -64279791 + L2 LINE L2 3015 3180 -92 2078 112 10 16 chr3 153757368 153757671 -64279487 - AluSx SINE Alu -11 301 1 2443 86 0 0 chr3 153758346 153758648 -64278510 + AluSq SINE Alu 1 302 -11 47 61 0 0 chr3 153760530 153760612 -64276546 + AT_rich Low_complexity Low_complexity 1 82 0 206 71 0 48 chr3 153760612 153760654 -64276504 + (TTTTG)n Simple_repeat Simple_repeat 4 43 0 538 203 16 0 chr3 153760658 153760786 -64276372 - Charlie1 DNA MER1_type 0 2761 2632 339 100 0 0 chr3 153760798 153760848 -64276310 + MADE1 DNA Mariner 1 50 -30 1539 162 54 11 chr3 153760855 153761206 -64275952 - Charlie1 DNA MER1_type -138 2623 2258 201 343 130 9 chr3 153761361 153761469 -64275689 - L2 LINE L2 -56 3216 3096 34 45 0 15 chr3 153762124 153762156 -64275002 + AT_rich Low_complexity Low_complexity 1 32 -33 1668 165 3 72 chr3 153762156 153762490 -64274668 + AluJo SINE Alu 1 311 -1 34 45 0 15 chr3 153762490 153762523 -64274635 + AT_rich Low_complexity Low_complexity 32 65 0 360 264 64 8 chr3 153762526 153762651 -64274507 - MER94 DNA DNA -2 132 1 2311 94 7 10 chr3 153762782 153763090 -64274068 + AluSg SINE Alu 1 307 -3 431 247 91 71 chr3 153763621 153763809 -64273349 - MER102b DNA MER1_type -1094 334 136 2289 102 0 0 chr3 153763809 153764103 -64273055 - AluSx SINE Alu -18 294 1 431 247 91 71 chr3 153764103 153764210 -64272948 - MER102b DNA MER1_type -1292 136 33 180 245 0 61 chr3 153764516 153764565 -64272593 + L2 LINE L2 3150 3195 -77 349 267 14 123 chr3 153764984 153765130 -64272028 + MER5A DNA MER1_type 60 189 0 185 275 14 72 chr3 153765130 153765180 -64271978 + L2 LINE L2 3268 3313 0 1353 111 0 0 chr3 153765205 153765386 -64271772 - AluSg/x SINE Alu 0 310 130 210 349 15 0 chr3 153765399 153765465 -64271693 + L2 LINE L2 3205 3271 -1 2396 96 3 0 chr3 153765515 153765827 -64271331 - AluSp SINE Alu 0 313 1 356 284 140 36 chr3 153765910 153766132 -64271026 + L2 LINE L2 2601 2845 -469 223 232 36 0 chr3 153766130 153766186 -64270972 - L2 LINE L2 -6 3266 3209 * 24 0 0 0 chr3 153766264 153766288 -64270870 + AT_rich Low_complexity Low_complexity 1 24 0 388 303 74 49 chr3 153766420 153766582 -64270576 + L2 LINE L2 3102 3267 -5 419 219 191 27 chr3 153767989 153768059 -64269099 - MER112 DNA MER1_type -18 242 185 2554 75 0 0 chr3 153768059 153768367 -64268791 + AluSc SINE Alu 1 308 -1 419 219 191 27 chr3 153768367 153768479 -64268679 - MER112 DNA MER1_type -75 185 30 1468 134 0 0 chr3 153769025 153769234 -64267924 + AluSg/x SINE Alu 87 295 -17 277 269 65 54 chr3 153776331 153776424 -64260734 - MIR SINE MIR -103 105 12 1736 114 70 4 chr3 153777565 153777836 -64259322 + AluSg SINE Alu 1 289 -21 183 362 17 0 chr3 153777932 153777990 -64259168 - L2 LINE L2 -98 3174 3116 845 201 44 18 chr3 153778306 153778535 -64258623 - L2 LINE L2 -546 2768 2534 1181 205 107 33 chr3 153778535 153778984 -64258174 - L1MC5 LINE L1 -28 7933 7452 548 250 16 48 chr3 153779063 153779251 -64257907 - L2 LINE L2 -761 2553 2372 561 274 158 63 chr3 153779518 153779962 -64257196 - L2 LINE L2 -232 3040 2584 972 219 87 69 chr3 153779973 153780320 -64256838 - MER57A LTR ERV1 -8 395 43 229 323 15 15 chr3 153780339 153780472 -64256686 - L2 LINE L2 -736 2578 2446 1410 180 12 4 chr3 153780552 153780808 -64256350 + MER47A DNA MER2_type 1 258 -108 1739 132 173 19 chr3 153781752 153782122 -64255036 - MSTA LTR MaLR 0 428 2 2399 64 0 7 chr3 153782139 153782437 -64254721 - AluY SINE Alu -15 296 1 2273 117 7 0 chr3 153782687 153782995 -64254163 + AluSg SINE Alu 1 310 0 900 246 128 69 chr3 153783262 153783928 -64253230 - L1ME4a LINE L1 -106 6015 5311 2382 96 3 0 chr3 153784486 153784789 -64252369 - AluSg SINE Alu -2 308 5 261 165 0 66 chr3 153785102 153785193 -64251965 + (CATATA)n Simple_repeat Simple_repeat 2 86 0 359 345 151 38 chr3 153785299 153785830 -64251328 - L2 LINE L2 -654 2660 2070 27 29 0 0 chr3 153787565 153787599 -64249559 + AT_rich Low_complexity Low_complexity 1 34 0 1889 132 46 0 chr3 153787615 153787896 -64249262 - AluSg SINE Alu -16 294 1 401 257 121 21 chr3 153788275 153788415 -64248743 + MIR3 SINE MIR 32 185 -23 545 213 318 25 chr3 153788511 153788750 -64248408 - MLT1H LTR MaLR 0 549 259 238 257 105 38 chr3 153788790 153788895 -64248263 - MLT1H LTR MaLR -460 133 22 2096 117 3 19 chr3 153789065 153789373 -64247785 - AluSx SINE Alu -9 303 1 766 172 0 8 chr3 153789798 153789926 -64247232 - FLAM_A SINE Alu -5 128 2 1567 186 20 30 chr3 153790008 153790309 -64246849 + AluJb SINE Alu 3 300 -12 280 321 44 44 chr3 153790357 153790494 -64246664 - MIR3 SINE MIR -16 192 56 379 267 213 10 chr3 153790520 153790722 -64246436 + MIR SINE MIR 20 262 0 238 306 32 16 chr3 153790853 153790977 -64246181 + CT-rich Low_complexity Low_complexity 3 128 0 214 231 19 0 chr3 153791703 153791755 -64245403 + (TA)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr3 153792533 153792555 -64244603 + AT_rich Low_complexity Low_complexity 1 22 0 406 81 16 0 chr3 153792795 153792857 -64244301 - L1MB7 LINE L1 -5 6179 6117 430 231 77 13 chr3 153792861 153793017 -64244141 + L1MC4 LINE L1 7873 8038 -4 25 0 0 0 chr3 153793056 153793081 -64244077 + AT_rich Low_complexity Low_complexity 1 25 0 290 203 58 29 chr3 153793081 153793150 -64244008 - L1MB7 LINE L1 -58 6126 6056 21 57 0 0 chr3 153794089 153794124 -64243034 + AT_rich Low_complexity Low_complexity 1 35 0 303 250 0 12 chr3 153795866 153795946 -64241212 + L1MCa LINE L1 1990 2068 -4358 238 211 22 30 chr3 153795948 153796048 -64241110 - L1MEd LINE L1 -1339 6686 1705 554 301 54 20 chr3 153796559 153796762 -64240396 - MIR SINE MIR -44 218 9 203 226 157 78 chr3 153797851 153797966 -64239192 + MIR SINE MIR 59 144 -64 584 281 45 56 chr3 153798286 153798553 -64238605 + L2 LINE L2 1823 2086 -1228 725 179 26 0 chr3 153798739 153798856 -64238302 + FLAM_C SINE Alu 1 120 -23 852 199 0 0 chr3 153799484 153799635 -64237523 + Tigger1 DNA MER2_type 1 151 -2267 * 988 148 74 20 chr3 153799634 153799837 -64237321 + Tigger1 DNA MER2_type 2205 2418 0 2649 135 24 12 chr3 153799983 153800404 -64236754 - MSTB LTR MaLR 0 426 1 2705 82 6 0 chr3 153800583 153800936 -64236222 - THE1A LTR MaLR 0 355 1 1576 94 71 0 chr3 153801242 153801466 -64235692 - AluSp SINE Alu -9 304 65 351 250 145 52 chr3 153801566 153801969 -64235189 - L1MEd LINE L1 -4886 1233 810 2325 98 0 0 chr3 153801969 153802264 -64234894 + AluSx SINE Alu 1 295 -17 351 250 145 52 chr3 153802264 153802318 -64234840 - L1MEd LINE L1 -5309 810 762 290 300 0 12 chr3 153802470 153802550 -64234608 - MLT1J LTR MaLR -331 180 102 279 0 0 0 chr3 153802583 153802614 -64234544 + (CA)n Simple_repeat Simple_repeat 2 32 0 367 250 45 45 chr3 153804408 153804540 -64232618 + L2 LINE L2 3171 3302 -11 454 353 124 10 chr3 153805516 153805822 -64231336 + L2 LINE L2 156 496 -2818 956 208 61 103 chr3 153805924 153806333 -64230825 - L1MC4 LINE L1 -143 7899 7508 332 214 22 179 chr3 153806410 153806639 -64230519 - L1MC4a LINE L1 -1506 6302 6110 268 373 57 40 chr3 153807919 153808147 -64229011 + L2 LINE L2 2953 3184 -88 1531 280 55 33 chr3 153808579 153809424 -64227734 - L2 LINE L2 0 3313 2438 343 298 119 30 chr3 153809569 153809710 -64227448 + L1ME LINE L1 12 139 -5931 2205 106 3 0 chr3 153809710 153809994 -64227164 - AluSp SINE Alu -28 285 1 343 298 119 30 chr3 153809994 153810147 -64227011 + L1ME LINE L1 139 332 -5738 1530 279 79 26 chr3 153810483 153811417 -64225741 + L1ME LINE L1 562 1583 -4678 394 182 92 1 chr3 153811517 153811618 -64225540 - L1ME2 LINE L1 -252 5912 5814 347 213 106 0 chr3 153811647 153811741 -64225417 - MIR SINE MIR -99 163 60 1648 190 192 10 chr3 153811770 153812165 -64224993 - L1MD2 LINE L1 -21 6338 5872 * 6192 159 38 55 chr3 153812152 153813118 -64224040 - L1MDa LINE L1 -3863 2677 1696 2144 145 0 0 chr3 153813118 153813428 -64223730 - AluSx SINE Alu -2 310 1 6192 159 38 55 chr3 153813428 153813948 -64223210 - L1MDa LINE L1 -4844 1696 1214 2947 112 33 11 chr3 153813948 153814404 -64222754 + L1PA13 LINE L1 5696 6161 -2 6192 159 38 55 chr3 153814404 153814490 -64222668 - L1MDa LINE L1 -5326 1214 1128 1379 137 60 17 chr3 153814490 153814714 -64222444 - MSTB LTR MaLR 0 426 190 2064 102 60 0 chr3 153814714 153814998 -64222160 - AluSg SINE Alu -9 301 1 11019 141 29 7 chr3 153815006 153817714 -64219444 - L1MA3 LINE L1 -168 6137 3370 467 302 273 42 chr3 153817982 153818694 -64218464 + L2 LINE L2 906 1781 -1533 393 58 0 0 chr3 153818715 153818767 -64218391 + (TG)n Simple_repeat Simple_repeat 2 53 0 939 206 50 0 chr3 153818782 153818981 -64218177 + MER3 DNA MER1_type 1 209 0 1732 213 340 16 chr3 153818981 153819755 -64217403 + L1MD3 LINE L1 6764 7788 -207 281 244 168 0 chr3 153819774 153819893 -64217265 + L1MD3 LINE L1 7856 7994 -1 215 291 291 0 chr3 153819911 153819997 -64217161 + L2 LINE L2 2247 2357 -957 895 62 0 0 chr3 153820002 153820114 -64217044 + AluY SINE Alu 175 286 -25 2143 247 90 16 chr3 153820184 153820865 -64216293 - L1MEc LINE L1 -5385 1011 281 327 172 17 0 chr3 153820930 153820988 -64216170 - L1MEc LINE L1 -6301 95 37 980 179 73 37 chr3 153822634 153822852 -64214306 - MER46A DNA MER2_type -10 226 1 189 308 15 15 chr3 153823991 153824056 -64213102 + MIR SINE MIR 196 260 -2 2226 79 13 16 chr3 153824232 153824536 -64212622 + AluSp SINE Alu 1 303 -10 421 256 75 0 chr3 153824544 153824677 -64212481 + L1MD1 LINE L1 6100 6242 0 190 378 65 7 chr3 153826644 153826803 -64210355 - L2 LINE L2 -299 2973 2807 402 279 36 42 chr3 153827485 153827650 -64209508 + MIR SINE MIR 66 229 -33 28 29 0 0 chr3 153828238 153828273 -64208885 + AT_rich Low_complexity Low_complexity 1 35 0 1980 129 0 0 chr3 153831360 153831647 -64205511 - AluSg SINE Alu -23 287 1 829 259 86 17 chr3 153832231 153832463 -64204695 - MIR SINE MIR -10 252 5 2249 96 3 0 chr3 153833660 153833961 -64203197 - AluSx SINE Alu -10 302 1 2200 126 31 14 chr3 153834095 153834453 -64202705 + THE1B LTR MaLR 1 364 0 1221 187 178 56 chr3 153834821 153835282 -64201876 + L1MC5 LINE L1 7124 7640 -321 233 200 53 84 chr3 153835292 153835387 -64201771 + L1MC5 LINE L1 7735 7826 -135 2209 85 3 0 chr3 153835810 153836113 -64201045 + AluSx SINE Alu 1 304 0 22 80 0 0 chr3 153836196 153836246 -64200912 + AT_rich Low_complexity Low_complexity 1 50 0 23 33 0 0 chr3 153837039 153837069 -64200089 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 153837545 153837566 -64199592 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr3 153837926 153837954 -64199204 + AT_rich Low_complexity Low_complexity 1 28 0 1859 169 22 3 chr3 153838305 153838660 -64198498 - L1PA16 LINE L1 0 6166 5805 284 236 79 0 chr3 153838660 153838749 -64198409 + L1MC5 LINE L1 7814 7909 -52 2051 103 7 33 chr3 153838894 153839194 -64197964 - AluSx SINE Alu -18 294 3 315 161 0 0 chr3 153840706 153840762 -64196396 + (TA)n Simple_repeat Simple_repeat 2 57 0 2088 139 0 0 chr3 153840766 153841068 -64196090 - AluSx SINE Alu -10 302 1 22 0 0 0 chr3 153842422 153842444 -64194714 + AT_rich Low_complexity Low_complexity 1 22 0 2267 64 0 3 chr3 153842838 153843166 -64193992 - AluY SINE Alu 0 327 1 498 264 102 49 chr3 153844050 153844296 -64192862 - MIR SINE MIR -1 261 3 1986 91 61 10 chr3 153844374 153844671 -64192487 - AluSp SINE Alu -1 312 1 23 0 0 0 chr3 153845733 153845756 -64191402 + AT_rich Low_complexity Low_complexity 1 23 0 639 247 103 6 chr3 153846642 153846816 -64190342 - MIR SINE MIR 0 262 72 291 356 106 0 chr3 153846918 153847022 -64190136 - L2 LINE L2 -13 3259 3145 421 147 37 18 chr3 153847399 153847502 -64189656 - L1M1 LINE L1 -411 5755 5654 362 306 40 0 chr3 153847833 153847957 -64189201 + L1ME2 LINE L1 6036 6164 0 2124 134 0 0 chr3 153848381 153848680 -64188478 + AluSx SINE Alu 14 312 0 288 0 0 0 chr3 153848680 153848712 -64188446 + (TA)n Simple_repeat Simple_repeat 2 33 0 243 61 0 0 chr3 153849146 153849179 -64187979 + (CA)n Simple_repeat Simple_repeat 2 34 0 834 180 47 47 chr3 153849238 153849410 -64187748 + FAM SINE Alu 1 172 -3 22 0 0 0 chr3 153849831 153849853 -64187305 + AT_rich Low_complexity Low_complexity 1 22 0 1076 194 33 0 chr3 153850023 153850234 -64186924 - MER20 DNA MER1_type -1 218 1 508 254 22 37 chr3 153851510 153851644 -64185514 + MER94 DNA DNA 2 133 -1 33 0 0 23 chr3 153851715 153851736 -64185422 + AT_rich Low_complexity Low_complexity 1 21 -22 2284 97 0 3 chr3 153851736 153852036 -64185122 + AluSq SINE Alu 1 299 -14 33 0 0 23 chr3 153852036 153852058 -64185100 + AT_rich Low_complexity Low_complexity 21 43 0 182 36 0 36 chr3 153852610 153852638 -64184520 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 2353 100 0 0 chr3 153852645 153852954 -64184204 + AluSg SINE Alu 1 309 -1 592 219 35 101 chr3 153853222 153853377 -64183781 - MER58C DNA MER1_type -2206 214 77 1108 137 27 129 chr3 153853377 153853640 -64183518 - MER46A DNA MER2_type 0 236 1 592 219 35 101 chr3 153853640 153853712 -64183446 - MER58C DNA MER1_type -2343 77 2 1217 218 43 21 chr3 153853724 153854050 -64183108 - MER46C DNA MER2_type -1 337 5 1916 141 0 3 chr3 153854111 153854394 -64182764 + AluSx SINE Alu 1 282 -30 216 0 0 0 chr3 153854397 153854421 -64182737 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 25 0 0 0 chr3 153855035 153855060 -64182098 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr3 153855116 153855138 -64182020 + AT_rich Low_complexity Low_complexity 1 22 0 2241 112 0 7 chr3 153856024 153856328 -64180830 + AluSx SINE Alu 1 302 -10 2274 96 3 0 chr3 153857430 153857733 -64179425 - AluSg SINE Alu -6 304 1 1158 246 93 38 chr3 153858201 153858751 -64178407 + L1MEc LINE L1 1824 2403 -3993 1773 242 71 43 chr3 153858769 153858954 -64178204 + L1MEc LINE L1 2408 2586 -3629 1595 166 57 3 chr3 153858954 153859250 -64177908 - AluJo SINE Alu 0 312 1 1773 242 71 43 chr3 153859250 153859716 -64177442 + L1MEc LINE L1 2586 3077 -3138 2454 178 61 18 chr3 153859732 153860448 -64176710 + L1MB8 LINE L1 5055 5814 -364 968 102 0 0 chr3 153860450 153860577 -64176581 + AluJb SINE Alu 1 127 -185 1248 206 36 55 chr3 153860585 153860969 -64176189 + L1MB8 LINE L1 5797 6173 -5 804 245 115 5 chr3 153860972 153861372 -64175786 + L1MEc LINE L1 3095 3538 -2677 1280 239 256 61 chr3 153861393 153862134 -64175024 + L1MEc LINE L1 3573 4509 -1706 2193 95 0 10 chr3 153862134 153862429 -64174729 + AluSx SINE Alu 1 292 -20 1280 239 256 61 chr3 153862429 153862553 -64174605 + L1MEc LINE L1 4509 4607 -1608 1307 218 116 34 chr3 153864043 153864477 -64172681 + L1MEc LINE L1 4613 5099 -1116 1784 145 3 47 chr3 153864477 153864794 -64172364 + AluSx SINE Alu 1 303 -9 1307 218 116 34 chr3 153864794 153864886 -64172272 + L1MEc LINE L1 5099 5182 -1033 969 252 153 10 chr3 153864903 153865543 -64171615 - L1M4 LINE L1 -4753 1891 1040 1921 162 21 15 chr3 153865549 153865883 -64171275 - MER1B DNA MER1_type 0 337 2 249 279 146 19 chr3 153866038 153866196 -64170962 - L1M4 LINE L1 -5661 881 704 2236 122 0 0 chr3 153866620 153866924 -64170234 + AluSq SINE Alu 1 304 -9 3054 145 40 5 chr3 153866924 153867472 -64169686 - L1MB7 LINE L1 -21 6163 5597 463 292 115 53 chr3 153867955 153868087 -64169071 - HAL1 LINE L1 -741 1766 1644 1289 39 0 0 chr3 153868087 153868242 -64168916 + L1PA5 LINE L1 5992 6146 -8 463 292 115 53 chr3 153868242 153868253 -64168905 - HAL1 LINE L1 -863 1644 1635 189 0 0 0 chr3 153868253 153868274 -64168884 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 463 292 115 53 chr3 153868274 153868581 -64168577 - HAL1 LINE L1 -872 1635 1287 568 272 168 24 chr3 153869686 153869936 -64167222 + L2 LINE L2 3023 3308 -5 1478 166 53 7 chr3 153872062 153872364 -64164794 + L1MB7 LINE L1 5772 6087 -97 26 50 0 0 chr3 153872705 153872745 -64164413 + AT_rich Low_complexity Low_complexity 1 40 0 788 89 17 22 chr3 153873648 153873828 -64163330 + (TA)n Simple_repeat Simple_repeat 2 180 0 1698 186 3 3 chr3 153873832 153874122 -64163036 - AluJo SINE Alu -22 290 1 592 287 111 19 chr3 153874414 153874675 -64162483 - MLT1L LTR MaLR -9 606 322 364 233 17 52 chr3 153874725 153874841 -64162317 - MLT1L LTR MaLR -503 112 1 448 238 70 35 chr3 153874847 153875011 -64162147 - MIR SINE MIR -62 146 21 23 0 0 0 chr3 153875023 153875046 -64162112 + AT_rich Low_complexity Low_complexity 1 23 0 668 273 49 45 chr3 153875228 153875492 -64161666 + L2 LINE L2 3048 3312 -1 22 35 0 0 chr3 153875772 153875801 -64161357 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr3 153878575 153878598 -64158560 + AT_rich Low_complexity Low_complexity 1 23 0 1603 192 7 3 chr3 153878865 153879173 -64157985 - AluSc SINE Alu 0 309 1 184 310 17 0 chr3 153879197 153879255 -64157903 - L2 LINE L2 -1 3271 3213 2219 98 3 0 chr3 153880559 153880866 -64156292 - AluSx SINE Alu -4 308 1 898 247 195 33 chr3 153881154 153881825 -64155333 - L2 LINE L2 -70 3243 2376 1956 141 0 10 chr3 153882606 153882911 -64154247 + AluSx SINE Alu 1 302 -10 1014 184 24 57 chr3 153884157 153884222 -64152936 + MER20 DNA MER1_type 1 67 -152 1824 122 7 33 chr3 153884222 153884526 -64152632 - AluSx SINE Alu -16 296 1 1014 184 24 57 chr3 153884526 153884672 -64152486 + MER20 DNA MER1_type 67 205 -14 374 272 103 43 chr3 153884717 153884901 -64152257 + MIR SINE MIR 68 262 0 1915 138 0 28 chr3 153885504 153885714 -64151444 - AluSx SINE Alu -2 310 111 4215 151 99 7 chr3 153885714 153886468 -64150690 + LTR1B LTR ERV1 1 824 -2 1915 138 0 28 chr3 153886468 153886576 -64150582 - AluSx SINE Alu -201 111 1 592 117 11 0 chr3 153886761 153886855 -64150303 + MER53 DNA DNA 1 95 -94 537 138 0 0 chr3 153886778 153886865 -64150293 - MER53 DNA DNA -8 181 95 * 2106 113 0 3 chr3 153887607 153887909 -64149249 + AluSx SINE Alu 1 301 -11 255 61 0 0 chr3 153887911 153887944 -64149214 + (GGGGA)n Simple_repeat Simple_repeat 4 36 0 187 355 189 0 chr3 153887944 153888113 -64149045 - L3b LINE CR1 -276 1307 1107 596 285 4 4 chr3 153888398 153888665 -64148493 + AluSq SINE Alu 40 306 -7 291 114 0 0 chr3 153888669 153888713 -64148445 + (GGGAA)n Simple_repeat Simple_repeat 5 48 0 678 181 47 67 chr3 153890337 153890414 -64146744 + MER5A DNA MER1_type 1 78 -111 2121 105 7 16 chr3 153890414 153890720 -64146438 + AluSc SINE Alu 1 303 -6 678 181 47 67 chr3 153890720 153890835 -64146323 + MER5A DNA MER1_type 78 189 0 2232 92 13 0 chr3 153891816 153892121 -64145037 + AluSg SINE Alu 1 309 -1 654 244 72 44 chr3 153892122 153892372 -64144786 + L1ME2 LINE L1 5815 6071 -93 4239 83 265 0 chr3 153892411 153893064 -64144094 + LTR12 LTR ERV1 1 826 0 4529 117 10 48 chr3 153893064 153893780 -64143378 - LTR8 LTR ERV1 -2 689 1 2461 103 44 89 chr3 153893873 153894369 -64142789 - LTR21A LTR ERV1 -19 486 13 239 128 77 0 chr3 153894373 153894412 -64142746 - LTR21A LTR ERV1 -463 42 1 1104 237 51 59 chr3 153894427 153894742 -64142416 + MER39 LTR ERV1 302 615 -92 2272 92 0 3 chr3 153894742 153895047 -64142111 + AluSq SINE Alu 3 306 -7 1104 237 51 59 chr3 153895047 153895140 -64142018 + MER39 LTR ERV1 615 707 0 294 185 80 4 chr3 153895145 153895235 -64141923 + L1MA10 LINE L1 6074 6333 0 587 243 141 0 chr3 153895438 153895623 -64141535 - MIR SINE MIR -5 257 47 315 224 47 28 chr3 153895639 153895746 -64141412 + L1ME4a LINE L1 5989 6097 -24 2199 93 7 0 chr3 153895747 153896047 -64141111 - AluSq SINE Alu -11 302 1 264 282 91 18 chr3 153896210 153896320 -64140838 - MIR SINE MIR -128 134 17 1133 261 58 84 chr3 153897933 153898620 -64138538 + L1MC4a LINE L1 5258 5926 -1882 752 281 74 56 chr3 153898844 153898920 -64138238 + L1MEd LINE L1 17 90 -6029 1920 122 48 0 chr3 153898920 153899214 -64137944 - AluSx SINE Alu -4 308 1 752 281 74 56 chr3 153899214 153899582 -64137576 + L1MEd LINE L1 90 469 -5650 865 248 103 62 chr3 153899588 153899691 -64137467 + L1M4 LINE L1 3621 3718 -2428 2480 60 0 0 chr3 153899691 153899993 -64137165 - AluSx SINE Alu -10 302 1 865 248 103 62 chr3 153899993 153900298 -64136860 + L1M4 LINE L1 3718 4060 -2086 1694 171 14 0 chr3 153900298 153900585 -64136573 + AluJb SINE Alu 18 308 -4 865 248 103 62 chr3 153900585 153900727 -64136431 + L1M4 LINE L1 4060 4195 -1951 2160 101 0 0 chr3 153900949 153901246 -64135912 + AluSq SINE Alu 1 297 -16 433 81 0 0 chr3 153901351 153901413 -64135745 + Alu SINE Alu 245 306 -6 2017 125 10 0 chr3 153902090 153902395 -64134763 + AluSq SINE Alu 1 308 -5 317 238 56 16 chr3 153902694 153902844 -64134314 - MLT1L LTR MaLR -426 189 1 618 162 0 0 chr3 153902940 153903039 -64134119 + FLAM_A SINE Alu 43 141 -1 1730 138 42 3 chr3 153903589 153903872 -64133286 - AluSx SINE Alu -18 294 1 304 299 30 37 chr3 153904713 153904847 -64132311 + L2 LINE L2 2992 3124 -148 1894 134 0 0 chr3 153904962 153905238 -64131920 + AluSx SINE Alu 22 297 -15 1959 110 16 19 chr3 153905461 153905771 -64131387 - AluSx SINE Alu -3 309 1 1051 249 80 74 chr3 153905819 153906155 -64131003 - L1ME LINE L1 -630 5534 5201 1929 141 10 0 chr3 153906155 153906452 -64130706 - AluSx SINE Alu -12 300 1 1051 249 80 74 chr3 153906452 153906557 -64130601 - L1ME LINE L1 -963 5201 5098 2102 105 3 7 chr3 153906557 153906853 -64130305 - AluSx SINE Alu -17 295 1 1051 249 80 74 chr3 153906853 153907358 -64129800 - L1ME LINE L1 -1066 5098 4580 1942 118 0 53 chr3 153907369 153907691 -64129467 - AluSx SINE Alu -6 306 2 1133 276 77 32 chr3 153907749 153908109 -64129049 + MLT1J2 LTR MaLR 1 385 -65 2159 118 0 0 chr3 153908109 153908414 -64128744 + AluSx SINE Alu 1 305 -7 1133 276 77 32 chr3 153908414 153908484 -64128674 + MLT1J2 LTR MaLR 385 450 0 517 295 66 42 chr3 153908487 153908728 -64128430 - L1ME LINE L1 -1665 4481 4235 1404 99 0 28 chr3 153908854 153909065 -64128093 + AluSg/x SINE Alu 106 310 -2 2037 176 43 15 chr3 153910031 153910428 -64126730 - MLT2D LTR ERVL -6 408 1 714 206 89 50 chr3 153910652 153910782 -64126376 - MER5A DNA MER1_type 0 189 49 925 281 122 6 chr3 153910782 153911102 -64126056 + LTR18A LTR ERVL 1 357 0 714 206 89 50 chr3 153911102 153911151 -64126007 - MER5A DNA MER1_type -140 49 3 424 297 161 0 chr3 153911170 153911325 -64125833 + MER5A DNA MER1_type 10 189 0 484 209 115 27 chr3 153911435 153911583 -64125575 - MER5B DNA MER1_type -17 161 1 525 301 97 25 chr3 153912357 153912676 -64124482 - MER90 LTR ERV1 -52 562 221 2155 93 3 37 chr3 153912832 153913155 -64124003 - AluSx SINE Alu 0 312 1 1639 180 0 25 chr3 153913389 153913705 -64123453 + AluJo SINE Alu 1 308 -4 602 308 43 53 chr3 153913707 153914103 -64123055 - MLT1J LTR MaLR -99 412 21 1945 203 174 10 chr3 153914163 153914650 -64122508 - MLT1F1 LTR MaLR 0 567 1 260 253 12 36 chr3 153914689 153914772 -64122386 + CT-rich Low_complexity Low_complexity 1 81 0 2798 199 15 46 chr3 153915302 153915954 -64121204 + LTR27 LTR ERV1 3 634 -2 1951 246 40 28 chr3 153916030 153916525 -64120633 + MLT1J LTR MaLR 2 502 -9 1244 225 62 60 chr3 153917157 153917367 -64119791 - MLT1D LTR MaLR -69 436 228 670 42 11 11 chr3 153917367 153917462 -64119696 + (TC)n Simple_repeat Simple_repeat 2 96 0 1244 225 62 60 chr3 153917462 153917686 -64119472 - MLT1D LTR MaLR -277 228 1 1716 85 9 0 chr3 153917733 153917957 -64119201 - AluSq SINE Alu -68 245 20 488 195 0 0 chr3 153918057 153918144 -64119014 - AluJ/FLAM SINE Alu -224 88 2 2116 104 0 3 chr3 153918188 153918487 -64118671 + AluSq SINE Alu 16 313 0 453 156 13 0 chr3 153918633 153918710 -64118448 - LTR33A LTR ERVL 0 523 446 2232 119 0 0 chr3 153918712 153919024 -64118134 - AluSx SINE Alu 0 312 1 410 230 43 68 chr3 153919378 153919539 -64117619 - LTR33A LTR ERVL -364 159 3 2379 128 7 91 chr3 153920129 153920581 -64116577 - MLT2D LTR ERVL 0 414 1 2206 82 3 35 chr3 153921525 153921844 -64115314 + AluSc SINE Alu 1 309 0 364 226 91 11 chr3 153922926 153923121 -64114037 - L1M3c LINE L1 -4590 1881 1518 1561 184 0 38 chr3 153923144 153923459 -64113699 - AluJo SINE Alu -9 303 1 417 315 7 27 chr3 153923468 153923617 -64113541 - L1MEd LINE L1 -5028 1091 946 1739 168 0 0 chr3 153923621 153923924 -64113234 + AluSx SINE Alu 5 307 0 240 184 0 0 chr3 153924354 153924403 -64112755 + (TATG)n Simple_repeat Simple_repeat 4 52 0 1709 109 0 53 chr3 153924524 153924614 -64112544 + AluSx SINE Alu 46 139 -173 2067 134 0 0 chr3 153924614 153924921 -64112237 + AluSx SINE Alu 1 307 -5 1709 109 0 53 chr3 153924921 153925095 -64112063 + AluSx SINE Alu 139 296 -16 245 188 0 0 chr3 153925095 153925143 -64112015 + L1MDa LINE L1 1874 1921 -4619 262 239 31 0 chr3 153925176 153925272 -64111886 + L1ME2 LINE L1 5844 5944 -226 22 0 0 0 chr3 153925317 153925339 -64111819 + AT_rich Low_complexity Low_complexity 1 22 0 781 104 0 0 chr3 153925827 153925933 -64111225 + AluSq/x SINE Alu 2 107 -205 1299 55 95 10 chr3 153926048 153926248 -64110910 + L1PA5 LINE L1 5938 6154 0 2293 263 37 13 chr3 153926248 153927528 -64109630 + L1ME3A LINE L1 4636 5950 -220 535 309 71 40 chr3 153927640 153928035 -64109123 - L1MEd LINE L1 -5269 850 444 303 300 81 90 chr3 153928097 153928407 -64108751 - L1MEd LINE L1 -5733 386 80 962 246 0 12 chr3 153928408 153928652 -64108506 + L1MB3 LINE L1 5032 5272 -874 1071 132 58 0 chr3 153928695 153928869 -64108289 + AluJb SINE Alu 75 258 -54 1400 132 125 59 chr3 153929021 153929293 -64107865 - AluSx SINE Alu -22 290 1 5079 140 19 16 chr3 153929293 153930167 -64106991 + L1MB3 LINE L1 5306 6182 -1 2234 100 0 0 chr3 153930177 153930478 -64106680 + AluSc SINE Alu 1 301 -8 261 257 14 40 chr3 153931797 153931871 -64105287 - L2 LINE L2 0 3313 3242 834 224 6 28 chr3 153932071 153932250 -64104908 + AluJb SINE Alu 137 311 -1 478 107 12 12 chr3 153932250 153932334 -64104824 + (GGAA)n Simple_repeat Simple_repeat 1 84 0 449 330 158 5 chr3 153932433 153932654 -64104504 - MIR SINE MIR -6 256 2 820 204 6 27 chr3 153933367 153933699 -64103459 + CT-rich Low_complexity Low_complexity 1 325 0 1688 147 22 0 chr3 153933699 153933972 -64103186 - AluJo SINE Alu -33 279 1 2869 168 90 54 chr3 153935151 153935818 -64101340 + LTR8 LTR ERV1 1 691 0 528 296 14 21 chr3 153936489 153936631 -64100527 + MIR SINE MIR 3 143 -119 414 256 0 0 chr3 153936638 153936720 -64100438 + L2 LINE L2 2685 2766 -548 576 256 109 14 chr3 153936720 153936931 -64100227 - L1M4 LINE L1 -3546 2600 2370 629 286 68 0 chr3 153936943 153937104 -64100054 + MER119 DNA MER1_type 1 172 -411 190 216 39 39 chr3 153937217 153937268 -64099890 - MIR3 SINE MIR -7 201 151 364 176 0 0 chr3 153937458 153937509 -64099649 - AluJb SINE Alu -53 249 199 186 176 29 0 chr3 153937533 153937567 -64099591 - MIR SINE MIR -141 67 33 1441 81 0 5 chr3 153937630 153937827 -64099331 + AluSg/x SINE Alu 108 303 -9 736 191 61 7 chr3 153937855 153938002 -64099156 + MLT1B LTR MaLR 236 390 0 215 210 16 65 chr3 153938225 153938287 -64098871 - L2 LINE L2 0 3313 3255 24 32 0 0 chr3 153938742 153938773 -64098385 + GC_rich Low_complexity Low_complexity 1 31 0 398 171 73 0 chr3 153939374 153939456 -64097702 - MLT2B3 LTR ERVL -466 88 1 * 817 226 67 67 chr3 153939456 153939738 -64097420 + MER54A LTR ERVL 523 804 -97 756 300 41 0 chr3 153939738 153940005 -64097153 + L1MEc LINE L1 1517 1794 -4602 42214 62 3 4 chr3 153940024 153941864 -64095294 + L1PA5 LINE L1 4 1845 -4309 2235 55 0 0 chr3 153941864 153942137 -64095021 - L1PA5 LINE L1 0 6154 5882 42214 62 3 4 chr3 153942137 153946297 -64090861 + L1PA5 LINE L1 1845 5997 -157 1242 103 0 0 chr3 153946605 153946770 -64090388 + AluSx SINE Alu 1 165 -147 180 111 0 0 chr3 153946799 153946826 -64090332 + (A)n Simple_repeat Simple_repeat 1 27 0 2580 126 31 49 chr3 153946845 153947298 -64089860 + MER65A LTR ERV1 1 445 0 2261 75 0 3 chr3 153947766 153948061 -64089097 - AluY SINE Alu -17 294 1 2315 183 86 0 chr3 153948394 153948859 -64088299 + MLT1D LTR MaLR 1 505 0 445 272 76 76 chr3 153948880 153949354 -64087804 - MLT1K LTR MaLR -1 475 2 1611 196 141 65 chr3 153949552 153949806 -64087352 + Charlie2 DNA MER1_type 2075 2309 -553 1735 158 10 13 chr3 153949806 153950104 -64087054 - AluSx SINE Alu -15 297 1 1611 196 141 65 chr3 153950104 153950189 -64086969 + Charlie2 DNA MER1_type 2309 2386 -476 2386 73 0 0 chr3 153950189 153950490 -64086668 - AluY SINE Alu -10 301 1 1611 196 141 65 chr3 153950490 153950774 -64086384 + Charlie2 DNA MER1_type 2386 2764 -98 2217 93 3 3 chr3 153950774 153951074 -64086084 + AluSp SINE Alu 3 302 -11 1611 196 141 65 chr3 153951074 153951181 -64085977 + Charlie2 DNA MER1_type 2764 2862 0 1867 153 3 7 chr3 153951385 153951693 -64085465 - AluSx SINE Alu -5 307 1 459 230 162 31 chr3 153951791 153951982 -64085176 - L2 LINE L2 -650 2664 2449 2108 115 3 3 chr3 153952198 153952503 -64084655 + AluSx SINE Alu 1 305 -7 250 269 10 39 chr3 153953268 153953372 -64083786 + MIR3 SINE MIR 102 202 -6 2112 110 0 19 chr3 153953704 153954013 -64083145 + AluSq SINE Alu 1 303 -10 731 274 44 13 chr3 153954351 153954576 -64082582 - MLT1A1 LTR MaLR 0 365 134 441 86 0 0 chr3 153954576 153954634 -64082524 - MER4A LTR ERV1 0 664 607 1007 124 75 0 chr3 153954635 153954796 -64082362 - LTR7 LTR ERV1 -137 313 141 2462 93 3 0 chr3 153954796 153955128 -64082030 - HERVH LTR ERV1 -208 7505 7173 1296 113 0 0 chr3 153955187 153955372 -64081786 - HERVH LTR ERV1 -770 6943 6759 * 2261 157 14 13 chr3 153955357 153955885 -64081273 - HERVH LTR ERV1 -1952 4702 3873 1146 153 15 0 chr3 153955885 153956081 -64081077 - HERVH LTR ERV1 -4375 3338 3140 * 14777 124 14 19 chr3 153956060 153958744 -64078414 - HERVH LTR ERV1 -4718 2995 11 1004 95 7 7 chr3 153958749 153958896 -64078262 - LTR7 LTR ERV1 0 450 304 2029 128 161 14 chr3 153958936 153959303 -64077855 - LTR21A LTR ERV1 -84 421 1 7896 155 15 6 chr3 153959303 153960664 -64076494 - HERVFH21 LTR ERV1 0 7979 5288 300 363 10 5 chr3 153961064 153961257 -64075901 - HERVFH21 LTR ERV1 -1838 5875 5682 395 348 21 0 chr3 153961271 153961412 -64075746 - HERVFH21 LTR ERV1 -525 6893 6750 8505 121 21 2 chr3 153961416 153962963 -64074195 - HERVFH21 LTR ERV1 -1812 4717 3074 5173 98 22 4 chr3 153962960 153963685 -64073473 - HERVFH21 LTR ERV1 -4238 2291 1554 * 3154 157 38 15 chr3 153963682 153964856 -64072302 - HERVFH21 LTR ERV1 -5063 1591 161 * 1943 132 180 6 chr3 153964957 153965312 -64071846 - LTR21A LTR ERV1 -88 417 1 8762 155 10 7 chr3 153965312 153966412 -64070746 + L1PB1 LINE L1 3621 4716 -1435 2121 113 3 0 chr3 153966412 153966713 -64070445 - AluSx SINE Alu -10 302 1 8762 155 10 7 chr3 153966713 153967945 -64069213 + L1PB1 LINE L1 4716 5965 -186 2348 89 0 0 chr3 153967945 153968249 -64068909 + AluSp SINE Alu 1 304 -9 8762 155 10 7 chr3 153968249 153968437 -64068721 + L1PB1 LINE L1 5965 6151 0 997 156 33 6 chr3 153969251 153969431 -64067727 - MER5A DNA MER1_type -4 185 1 313 316 83 29 chr3 153970745 153971123 -64066035 - L2 LINE L2 -263 3009 2619 1670 177 17 0 chr3 153971584 153971883 -64065275 - AluJb SINE Alu -8 304 1 357 260 60 20 chr3 153972680 153972780 -64064378 - MIR SINE MIR -79 183 80 180 291 13 76 chr3 153973584 153973663 -64063495 + L3b LINE CR1 1436 1509 -74 329 207 0 0 chr3 153973748 153973806 -64063352 - L2 LINE L2 0 3313 3256 2083 117 13 0 chr3 153973988 153974287 -64062871 - AluSx SINE Alu -9 303 1 564 209 16 31 chr3 153974526 153974655 -64062503 + L2 LINE L2 3187 3313 0 1647 124 4 0 chr3 153976452 153976694 -64060464 - AluSx SINE Alu -14 298 56 390 238 0 0 chr3 153976722 153976802 -64060356 - L1 LINE L1 -2445 3701 3622 1902 128 17 7 chr3 153976938 153977227 -64059931 + AluSx SINE Alu 3 294 -18 552 100 0 0 chr3 153977227 153977307 -64059851 + (GGGGA)n Simple_repeat Simple_repeat 1 80 0 1142 189 3 114 chr3 153977429 153977524 -64059634 - L1MEc LINE L1 -2369 3846 3742 1549 154 4 4 chr3 153977524 153977784 -64059374 - AluSx SINE Alu -7 305 46 1142 189 3 114 chr3 153977784 153978021 -64059137 - L1MEc LINE L1 -2473 3742 3551 896 92 0 0 chr3 153978021 153978140 -64059018 - AluSc SINE Alu -11 298 180 2311 208 53 36 chr3 153978163 153978860 -64058298 - L1MEc LINE L1 -2657 3558 2850 679 108 0 20 chr3 153978861 153978963 -64058195 - AluSg/x SINE Alu -63 246 147 728 192 0 0 chr3 153978963 153979083 -64058075 + FLAM_A SINE Alu 12 131 -11 3853 222 68 26 chr3 153979097 153980314 -64056844 - L1MEc LINE L1 -3400 2815 1651 2107 119 0 0 chr3 153980314 153980608 -64056550 - AluSq SINE Alu -18 295 2 3853 222 68 26 chr3 153980608 153980725 -64056433 - L1MEc LINE L1 -4564 1651 1540 1742 169 7 16 chr3 153980725 153981033 -64056125 - AluSx SINE Alu -3 309 5 3853 222 68 26 chr3 153981033 153981473 -64055685 - L1MEc LINE L1 -4675 1540 1018 425 277 18 18 chr3 153981473 153981639 -64055519 - AluSg/x SINE Alu -6 306 141 553 211 45 8 chr3 153981941 153982074 -64055084 + L1ME3 LINE L1 6019 6156 -6 24301 41 43 7 chr3 153982530 153982555 -64054603 - L1P LINE L1 -2999 3147 3124 19027 28 0 0 chr3 153982555 153985548 -64051610 - L1PA2 LINE L1 0 6155 3167 24301 41 43 7 chr3 153985548 153988560 -64048598 - L1P LINE L1 -3022 3124 1 1591 256 175 3 chr3 153989017 153989635 -64047523 + L2 LINE L2 35 758 -2556 2873 242 199 10 chr3 153989640 153990851 -64046307 + L2 LINE L2 1721 3145 -168 507 201 128 74 chr3 153990887 153991145 -64046013 + MLT1H LTR MaLR 111 410 -185 2430 63 0 0 chr3 153991570 153991869 -64045289 - AluY SINE Alu -12 299 1 1815 153 3 13 chr3 153992792 153993106 -64044052 - AluJo SINE Alu 0 312 2 1343 276 198 28 chr3 153993621 153993678 -64043480 + L2 LINE L2 1603 1649 -1665 2015 88 13 45 chr3 153993678 153993986 -64043172 - AluSx SINE Alu -14 298 1 1343 276 198 28 chr3 153993986 153994950 -64042208 + L2 LINE L2 1649 2797 -517 419 212 190 104 chr3 153994980 153995249 -64041909 + LTR33A LTR ERVL 3 294 -229 1777 96 52 0 chr3 153995315 153995589 -64041569 - AluSg SINE Alu 0 304 18 1408 154 42 3 chr3 153995966 153996252 -64040906 + L1PB4 LINE L1 5290 5586 -570 817 181 6 29 chr3 153996252 153996423 -64040735 + AluJb SINE Alu 138 304 -8 2470 143 18 35 chr3 153996439 153996604 -64040554 + L1PB4 LINE L1 5607 5773 -383 231 114 0 0 chr3 153996604 153996639 -64040519 + (TG)n Simple_repeat Simple_repeat 2 36 0 2470 143 18 35 chr3 153996639 153996929 -64040229 + L1PB4 LINE L1 5773 6054 -102 1052 173 0 46 chr3 153996902 153997099 -64040059 + L1PB4 LINE L1 5955 6142 -14 * 2121 109 0 3 chr3 153997099 153997392 -64039766 - AluSx SINE Alu -20 292 1 23 0 0 0 chr3 153997486 153997509 -64039649 + AT_rich Low_complexity Low_complexity 1 23 0 2073 114 7 0 chr3 153997509 153997799 -64039359 - AluSg SINE Alu -18 292 1 2150 111 0 22 chr3 153998257 153998573 -64038585 + AluSx SINE Alu 1 309 -3 691 64 0 5 chr3 153998915 153999119 -64038039 - AluY SINE Alu -10 301 1 671 234 159 26 chr3 153999133 153999359 -64037799 - MIR SINE MIR -2 260 5 1807 146 36 0 chr3 153999556 153999857 -64037301 + AluJb SINE Alu 1 312 0 22 0 0 0 chr3 154000163 154000185 -64036973 + AT_rich Low_complexity Low_complexity 1 22 0 1536 135 97 0 chr3 154000188 154000447 -64036711 - AluSx SINE Alu -28 284 1 1572 134 51 40 chr3 154000476 154000775 -64036383 + AluSx SINE Alu 3 304 0 1393 185 13 27 chr3 154000931 154001229 -64035929 + MER33 DNA MER1_type 31 324 0 2342 67 3 16 chr3 154001358 154001672 -64035486 + AluY SINE Alu 1 310 -1 1988 22 0 74 chr3 154002678 154002948 -64034210 - AluY SINE Alu -9 302 53 1175 115 44 0 chr3 154004619 154004801 -64032357 + AluSg/x SINE Alu 122 311 -1 3558 169 75 16 chr3 154004896 154005590 -64031568 - L1MB5 LINE L1 -9 6165 5431 205 225 0 0 chr3 154006522 154006562 -64030596 + MIR3 SINE MIR 116 155 -53 2324 89 0 3 chr3 154006620 154006933 -64030225 + AluSx SINE Alu 1 312 0 481 339 196 10 chr3 154007468 154008055 -64029103 - L2 LINE L2 -553 2761 2066 1001 94 0 0 chr3 154008058 154008196 -64028962 + Alu SINE Alu 168 305 -6 890 242 86 68 chr3 154008233 154008630 -64028528 - MLT1J LTR MaLR 0 511 108 281 258 0 15 chr3 154008785 154008851 -64028307 - MLT1L LTR MaLR -550 65 1 180 261 58 0 chr3 154008851 154008920 -64028238 - L2 LINE L2 -1293 2021 1949 1597 160 142 41 chr3 154010101 154010488 -64026670 + MSTC LTR MaLR 3 428 0 1254 129 122 84 chr3 154010742 154010851 -64026307 + AluJo SINE Alu 2 105 -207 2050 122 3 0 chr3 154010851 154011147 -64026011 + AluSx SINE Alu 1 297 -15 1254 129 122 84 chr3 154011147 154011323 -64025835 + AluJo SINE Alu 105 298 -14 381 250 97 26 chr3 154011328 154011592 -64025566 - MLT1J LTR MaLR -193 318 1 2038 210 65 76 chr3 154011690 154011863 -64025295 + MLT1E1 LTR MaLR 1 174 -480 1939 122 14 7 chr3 154011863 154012158 -64025000 + AluSg SINE Alu 1 297 -13 2038 210 65 76 chr3 154012158 154012645 -64024513 + MLT1E1 LTR MaLR 174 654 0 2143 110 3 3 chr3 154012709 154013010 -64024148 + AluSq SINE Alu 1 301 -12 1802 169 0 7 chr3 154013093 154013400 -64023758 + AluJo SINE Alu 1 305 -7 423 374 17 26 chr3 154013555 154013785 -64023373 - L2 LINE L2 -515 2799 2572 250 254 99 14 chr3 154014047 154014118 -64023040 + MIR3 SINE MIR 11 87 -121 1519 162 71 0 chr3 154014217 154014483 -64022675 - AluSx SINE Alu -27 285 1 964 312 166 7 chr3 154014588 154015033 -64022125 - MLT1K LTR MaLR -60 528 13 294 292 0 0 chr3 154015189 154015261 -64021897 - MIR SINE MIR -80 182 111 1934 131 10 0 chr3 154015369 154015666 -64021492 - AluY SINE Alu -11 300 1 2196 100 0 0 chr3 154015933 154016232 -64020926 - AluSx SINE Alu -13 299 1 430 314 19 75 chr3 154017022 154017090 -64020068 - L2 LINE L2 0 3272 3202 2278 95 0 0 chr3 154017090 154017395 -64019763 + AluSx SINE Alu 1 305 -7 430 314 19 75 chr3 154017395 154017485 -64019673 - L2 LINE L2 -70 3202 3123 2192 107 0 3 chr3 154017489 154017788 -64019370 + AluSx SINE Alu 1 298 -14 242 132 53 0 chr3 154017977 154018015 -64019143 - LTR16A1 LTR ERVL 0 457 418 2712 230 75 39 chr3 154018042 154018785 -64018373 + MER21B LTR ERV1 1 770 -93 518 272 47 43 chr3 154018856 154019135 -64018023 - LTR16A LTR ERVL -104 346 67 595 260 12 18 chr3 154019135 154019378 -64017780 - MER45C DNA AcHobo 0 953 677 * 1090 231 183 6 chr3 154019354 154019666 -64017492 - MER45C DNA AcHobo -561 392 26 624 324 125 21 chr3 154019746 154020218 -64016940 - L2 LINE L2 -338 2976 2456 345 307 50 85 chr3 154020294 154020573 -64016585 - L2 LINE L2 -65 3207 2953 1016 187 42 19 chr3 154020573 154020787 -64016371 + MER20 DNA MER1_type 1 219 0 345 307 50 85 chr3 154020787 154021018 -64016140 - L2 LINE L2 -319 2953 2715 757 152 8 30 chr3 154021027 154021159 -64015999 + FLAM_C SINE Alu 2 130 -13 187 128 0 106 chr3 154021464 154021511 -64015647 + MIR SINE MIR 46 87 -175 206 255 78 0 chr3 154021598 154021649 -64015509 + MER91 DNA MER1_type 136 190 0 185 300 0 0 chr3 154021743 154021793 -64015365 + L2 LINE L2 3210 3259 -13 276 350 186 6 chr3 154022279 154022456 -64014702 - MIR SINE MIR -24 238 30 198 71 0 0 chr3 154023817 154023845 -64013313 + (CA)n Simple_repeat Simple_repeat 2 29 0 2059 112 3 0 chr3 154024699 154024994 -64012164 + AluSx SINE Alu 1 296 -16 656 216 102 28 chr3 154025012 154025188 -64011970 + MIR SINE MIR 74 262 0 787 239 33 81 chr3 154025654 154025989 -64011169 + HAL1 LINE L1 764 1082 -1425 324 312 108 13 chr3 154026180 154026337 -64010821 - MER91A DNA MER1_type -24 172 1 228 296 0 119 chr3 154026867 154027026 -64010132 - MIR SINE MIR -12 250 111 891 174 14 0 chr3 154027184 154027328 -64009830 + AluSg/x SINE Alu 143 288 -24 432 0 0 0 chr3 154027860 154027908 -64009250 + (TG)n Simple_repeat Simple_repeat 1 48 0 1158 250 140 23 chr3 154029954 154030571 -64006587 - L2 LINE L2 -5 3308 2622 647 284 95 62 chr3 154030653 154031231 -64005927 + HAL1 LINE L1 533 1129 -1378 1578 285 105 8 chr3 154031699 154032258 -64004900 + HAL1 LINE L1 1128 1758 -749 2042 113 10 13 chr3 154032258 154032589 -64004569 + AluSx SINE Alu 1 312 0 1578 285 105 8 chr3 154032589 154032665 -64004493 + HAL1 LINE L1 1758 1825 -682 603 53 0 13 chr3 154032757 154032832 -64004326 + AluSq/x SINE Alu 61 134 -179 326 209 217 41 chr3 154032837 154033081 -64004077 + HAL1 LINE L1 1926 2212 -295 293 234 0 64 chr3 154033262 154033356 -64003802 + MER113 DNA MER1_type? 390 477 -44 355 271 29 35 chr3 154033840 154034010 -64003148 - MLT1J LTR MaLR -116 395 227 2112 87 76 0 chr3 154034037 154034325 -64002833 - AluSp SINE Alu -3 310 1 818 284 61 15 chr3 154034757 154035240 -64001918 - MLT1K LTR MaLR -3 585 2 257 333 18 23 chr3 154035243 154035414 -64001744 - L2 LINE L2 -554 2760 2591 2305 95 0 3 chr3 154036656 154036951 -64000207 - AluSx SINE Alu -18 294 1 480 246 50 119 chr3 154037081 154037234 -63999924 + MIR SINE MIR 5 132 -130 1888 173 0 7 chr3 154037234 154037535 -63999623 + AluJo SINE Alu 1 299 -13 480 246 50 119 chr3 154037535 154037658 -63999500 + MIR SINE MIR 132 262 0 2344 93 0 3 chr3 154037935 154038237 -63998921 + AluSx SINE Alu 1 301 -11 2238 103 7 0 chr3 154038429 154038730 -63998428 + AluSc SINE Alu 5 307 -2 570 329 89 14 chr3 154038757 154039116 -63998042 + L1MC4a LINE L1 5520 5905 -1903 3266 132 46 16 chr3 154039117 154039678 -63997480 + L1MB2 LINE L1 5594 6171 0 291 325 129 43 chr3 154040130 154040641 -63996517 - L2 LINE L2 -459 2855 2301 216 0 0 0 chr3 154041035 154041059 -63996099 + (TG)n Simple_repeat Simple_repeat 2 25 0 569 250 95 101 chr3 154041460 154041976 -63995182 + MER34 LTR ERV1 25 537 -5 242 330 80 0 chr3 154043524 154043612 -63993546 + MIR3 SINE MIR 64 158 -50 538 205 105 21 chr3 154043701 154043891 -63993267 + Charlie1 DNA MER1_type 26 231 -2530 315 264 47 28 chr3 154043952 154044058 -63993100 - L1MC4 LINE L1 -1322 6720 6613 515 119 36 12 chr3 154044067 154044151 -63993007 + Charlie1 DNA MER1_type 2676 2761 0 404 280 113 5 chr3 154044177 154044363 -63992795 - L2 LINE L2 0 3313 3108 1171 136 52 84 chr3 154046141 154046392 -63990766 + AluJb SINE Alu 58 300 -12 273 272 146 0 chr3 154047426 154047529 -63989629 + MIR3 SINE MIR 82 199 -9 1635 75 57 22 chr3 154048324 154048552 -63988606 - L1PA13 LINE L1 0 6163 5928 2564 31 0 0 chr3 154048556 154048844 -63988314 - AluY SINE Alu -4 307 20 324 284 114 69 chr3 154048962 154049109 -63988049 - MIR SINE MIR -61 147 1 28 29 0 0 chr3 154049283 154049318 -63987840 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr3 154050146 154050183 -63986975 + AT_rich Low_complexity Low_complexity 1 37 0 252 250 25 0 chr3 154050662 154050742 -63986416 + CT-rich Low_complexity Low_complexity 3 84 0 2375 99 0 0 chr3 154052310 154052613 -63984545 - AluSx SINE Alu -9 303 1 563 197 176 10 chr3 154053788 154053981 -63983177 - MER20B DNA MER1_type 0 783 559 2094 105 37 0 chr3 154053984 154054278 -63982880 + AluSq SINE Alu 5 309 -4 937 204 24 6 chr3 154054314 154054481 -63982677 + FAM SINE Alu 1 170 -5 2174 118 7 3 chr3 154054581 154054877 -63982281 - AluSq SINE Alu -16 297 1 21 0 0 0 chr3 154054955 154054976 -63982182 + AT_rich Low_complexity Low_complexity 1 21 0 690 230 42 101 chr3 154055156 154055286 -63981872 + MIR SINE MIR 37 150 -112 2058 122 7 11 chr3 154055286 154055572 -63981586 + AluJb SINE Alu 1 285 -27 690 230 42 101 chr3 154055572 154055658 -63981500 + MIR SINE MIR 150 240 -22 1888 161 0 19 chr3 154055899 154056216 -63980942 - AluJb SINE Alu -1 311 1 737 12 0 0 chr3 154056289 154056370 -63980788 + AluY SINE Alu 218 298 -13 458 45 45 30 chr3 154056446 154056513 -63980645 - MADE1 DNA Mariner 0 80 13 998 218 78 4 chr3 154056690 154056933 -63980225 + MIR SINE MIR 2 262 0 1058 189 12 0 chr3 154057230 154057399 -63979759 + FAM SINE Alu 4 174 -1 29 0 0 0 chr3 154057631 154057660 -63979498 + AT_rich Low_complexity Low_complexity 1 29 0 1054 209 30 0 chr3 154058019 154058220 -63978938 - MER3 DNA MER1_type 0 209 3 1289 149 28 9 chr3 154058621 154058836 -63978322 + MER20 DNA MER1_type 1 219 0 807 255 76 36 chr3 154058920 154059078 -63978080 - MIR SINE MIR -1 261 88 1069 202 163 39 chr3 154059078 154059410 -63977748 + MLT1A2 LTR MaLR 1 373 -1 807 255 76 36 chr3 154059410 154059502 -63977656 - MIR SINE MIR -174 88 1 2342 116 21 15 chr3 154059699 154060034 -63977124 - MER1B DNA MER1_type 0 337 1 456 292 92 21 chr3 154060436 154060676 -63976482 - MLT1L LTR MaLR -4 611 355 1068 126 0 36 chr3 154060769 154060936 -63976222 - AluSg/x SINE Alu -9 303 143 734 191 0 0 chr3 154061559 154061674 -63975484 + FLAM_A SINE Alu 1 115 -18 207 0 0 0 chr3 154061684 154061707 -63975451 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 976 231 21 12 chr3 154061854 154062096 -63975062 + L1ME4a LINE L1 5323 5566 -598 484 224 12 0 chr3 154063345 154063430 -63973728 + AluJb SINE Alu 2 87 -225 2267 118 0 0 chr3 154063430 154063727 -63973431 + AluSx SINE Alu 1 297 -15 2411 105 0 0 chr3 154063728 154064041 -63973117 + AluSp SINE Alu 1 313 0 1586 143 0 0 chr3 154064041 154064271 -63972887 + AluJb SINE Alu 73 303 -9 290 240 71 116 chr3 154065007 154065200 -63971958 + MIR SINE MIR 20 210 -52 273 258 56 0 chr3 154065507 154065596 -63971562 - MIR3 SINE MIR -22 186 93 368 250 15 39 chr3 154065650 154065824 -63971334 - MLT1L LTR MaLR -343 168 1 1233 157 20 71 chr3 154066582 154066667 -63970491 + L1MB2 LINE L1 5887 5975 -196 2172 114 0 0 chr3 154066667 154066964 -63970194 + AluSg SINE Alu 1 297 -13 1233 157 20 71 chr3 154066964 154067133 -63970025 + L1MB2 LINE L1 5975 6128 -43 659 267 111 9 chr3 154067386 154067603 -63969555 - MLT1I LTR MaLR -70 339 101 424 287 120 42 chr3 154067655 154068257 -63968901 + L1M4 LINE L1 2926 3574 -2572 322 271 98 44 chr3 154069825 154069953 -63967205 + MLT1K LTR MaLR 375 519 -69 2159 112 0 40 chr3 154069953 154070274 -63966884 - AluSx SINE Alu -4 308 1 322 271 98 44 chr3 154070274 154070348 -63966810 + MLT1K LTR MaLR 519 588 0 421 79 0 0 chr3 154070680 154070743 -63966415 + Alu SINE Alu 244 306 -3 691 229 142 39 chr3 154070764 154071074 -63966084 + L1ME4a LINE L1 5542 5883 -238 237 178 188 20 chr3 154071219 154071320 -63965838 + L1ME4a LINE L1 5982 6099 -22 2163 119 3 3 chr3 154071721 154072014 -63965144 + AluSx SINE Alu 1 293 -19 201 147 0 0 chr3 154072310 154072344 -63964814 + (CAA)n Simple_repeat Simple_repeat 1 34 0 912 235 41 25 chr3 154072350 154072593 -63964565 - MIR SINE MIR -10 252 6 198 0 0 0 chr3 154072701 154072723 -63964435 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 556 101 50 8 chr3 154073015 154073134 -63964024 + CT-rich Low_complexity Low_complexity 1 124 0 2177 95 3 43 chr3 154073145 154073470 -63963688 - AluSx SINE Alu 0 312 1 387 256 128 50 chr3 154073493 154073735 -63963423 - MLT1L LTR MaLR -18 597 337 579 98 63 0 chr3 154073756 154073767 -63963391 + GA-rich Low_complexity Low_complexity 2 11 -142 2066 86 34 7 chr3 154073767 154074059 -63963099 + AluSx SINE Alu 1 300 -12 579 98 63 0 chr3 154074059 154074190 -63962968 + GA-rich Low_complexity Low_complexity 11 153 0 2100 115 7 3 chr3 154074605 154074919 -63962239 + AluSx SINE Alu 1 315 0 249 136 106 0 chr3 154074937 154075003 -63962155 - L1ME1 LINE L1 -6 6160 6088 23 0 0 0 chr3 154076343 154076366 -63960792 + AT_rich Low_complexity Low_complexity 1 23 0 2377 79 0 16 chr3 154076684 154076999 -63960159 - AluSq SINE Alu -3 310 1 239 277 59 17 chr3 154077167 154077286 -63959872 + MLT1J2 LTR MaLR 20 143 -307 510 18 0 0 chr3 154077289 154077344 -63959814 + AluSc SINE Alu 73 127 -182 1538 99 0 9 chr3 154077293 154077504 -63959654 + AluSg/x SINE Alu 79 287 -25 22 0 0 0 chr3 154077505 154077527 -63959631 + AT_rich Low_complexity Low_complexity 1 22 0 435 184 9 18 chr3 154077622 154077736 -63959422 + GA-rich Low_complexity Low_complexity 1 113 0 1855 204 56 0 chr3 154077736 154078109 -63959049 - MLT2D LTR ERVL -20 394 1 365 290 6 74 chr3 154078113 154078275 -63958883 - MIR3 SINE MIR -56 152 2 1853 168 3 0 chr3 154078305 154078615 -63958543 - AluJo SINE Alu -1 311 1 562 238 210 5 chr3 154078759 154078973 -63958185 - MLT1L LTR MaLR -337 278 21 913 144 44 0 chr3 154079189 154079349 -63957809 - MLT1D LTR MaLR 0 505 339 1827 134 0 50 chr3 154079472 154079793 -63957365 + AluSx SINE Alu 1 305 -7 260 256 93 31 chr3 154079859 154079988 -63957170 - MER65A LTR ERV1 -308 137 1 1330 159 20 4 chr3 154079988 154080291 -63956867 - MLT1D LTR MaLR -164 341 4 2159 118 0 0 chr3 154080662 154080967 -63956191 - AluSx SINE Alu -7 305 1 673 272 33 11 chr3 154081366 154081546 -63955612 + MER63A DNA MER1_type 1 184 -26 216 306 0 0 chr3 154081812 154081874 -63955284 + GA-rich Low_complexity Low_complexity 3 64 0 425 254 354 6 chr3 154082066 154082397 -63954761 - L2 LINE L2 -2095 1219 774 476 269 74 7 chr3 154082412 154082561 -63954597 - MLT1J2 LTR MaLR -18 432 274 580 171 0 47 chr3 154082565 154082673 -63954485 + Charlie5 DNA MER1_type 1 104 -2520 2080 99 0 7 chr3 154082673 154082965 -63954193 + AluSg SINE Alu 1 290 -20 580 171 0 47 chr3 154082965 154082985 -63954173 + Charlie5 DNA MER1_type 104 123 -2501 270 70 298 0 chr3 154082983 154083040 -63954118 + Charlie5 DNA MER1_type 2265 2338 -274 * 391 109 109 0 chr3 154083041 154083105 -63954053 + MER41B LTR ERV1 481 551 -84 1498 174 16 23 chr3 154083129 154083433 -63953725 - AluJo SINE Alu -10 302 1 1438 152 14 34 chr3 154083433 154083637 -63953521 + Charlie5 DNA MER1_type 2334 2532 -92 1928 139 10 0 chr3 154083637 154083940 -63953218 - AluSx SINE Alu -6 306 1 1438 152 14 34 chr3 154083940 154084032 -63953126 + Charlie5 DNA MER1_type 2532 2624 0 369 282 103 0 chr3 154084110 154084227 -63952931 - MLT1J1 LTR MaLR -317 129 1 1064 241 136 13 chr3 154084232 154084606 -63952552 - L2 LINE L2 -2541 773 354 439 206 69 10 chr3 154084605 154084707 -63952451 + MIR SINE MIR 82 189 -73 * 1082 149 6 0 chr3 154084716 154084884 -63952274 - Tigger5 DNA MER2_type 0 2323 2155 266 159 302 0 chr3 154084944 154085007 -63952151 - Tigger5 DNA MER2_type -2240 83 2 2050 125 0 19 chr3 154085082 154085288 -63951870 - AluSx SINE Alu 0 312 140 2158 89 0 10 chr3 154085288 154085590 -63951568 - AluY SINE Alu -12 299 1 2050 125 0 19 chr3 154085590 154085728 -63951430 - AluSx SINE Alu -172 140 1 849 135 8 15 chr3 154086742 154086875 -63950283 + FLAM_C SINE Alu 2 133 0 2160 94 40 0 chr3 154086908 154087206 -63949952 - AluSq SINE Alu -3 310 1 26 0 0 0 chr3 154087365 154087391 -63949767 + AT_rich Low_complexity Low_complexity 1 26 0 2203 97 0 10 chr3 154087735 154088046 -63949112 - AluSg1 SINE Alu -1 308 1 193 314 70 0 chr3 154088500 154088586 -63948572 - MIR SINE MIR -9 253 162 * 205 278 97 0 chr3 154088584 154088656 -63948502 + MIR SINE MIR 79 157 -105 23 33 0 0 chr3 154088770 154088800 -63948358 + AT_rich Low_complexity Low_complexity 1 30 0 2019 115 158 6 chr3 154088806 154089154 -63948004 + MSTA LTR MaLR 1 401 -27 2540 39 58 3 chr3 154089160 154089469 -63947689 - LTR17 LTR ERV1 -454 326 1 12262 42 1 1 chr3 154089469 154090884 -63946274 - HERV17 LTR ERV1 0 8626 7212 2072 133 0 0 chr3 154090884 154091186 -63945972 - AluSx SINE Alu -10 302 1 305 98 0 0 chr3 154091186 154091227 -63945931 + MSTA LTR MaLR 388 428 0 1862 139 0 7 chr3 154092148 154092474 -63944684 - AluSg SINE Alu 0 310 1 637 243 11 28 chr3 154092737 154092914 -63944244 + MER5B DNA MER1_type 1 174 -4 1466 68 0 0 chr3 154094153 154094344 -63942814 + AluY SINE Alu 119 309 -2 1064 178 119 96 chr3 154094344 154094899 -63942259 + L1MC5 LINE L1 7360 7927 -34 296 209 99 166 chr3 154094909 154095092 -63942066 + HAL1 LINE L1 1102 1296 -1211 1316 191 60 4 chr3 154095092 154095359 -63941799 + AluJo SINE Alu 1 282 -30 296 209 99 166 chr3 154095359 154095372 -63941786 + HAL1 LINE L1 1296 1308 -1199 270 0 0 0 chr3 154095372 154095402 -63941756 + (CA)n Simple_repeat Simple_repeat 1 30 0 296 209 99 166 chr3 154095402 154095548 -63941610 + HAL1 LINE L1 1308 1422 -1085 1843 164 37 6 chr3 154096087 154096150 -63941008 - L1MB8 LINE L1 -1 6177 6117 1795 108 42 18 chr3 154096150 154096436 -63940722 + AluSx SINE Alu 1 293 -19 1843 164 37 6 chr3 154096436 154096725 -63940433 - L1MB8 LINE L1 -61 6117 5814 1898 93 41 0 chr3 154096746 154097014 -63940144 - AluSg SINE Alu -31 279 1 288 71 24 0 chr3 154097014 154097056 -63940102 - L1MB8 LINE L1 -353 5831 5789 761 193 4 0 chr3 154097537 154097766 -63939392 + (CA)n Simple_repeat Simple_repeat 1 230 0 251 122 41 0 chr3 154097766 154097815 -63939343 - MER4-int LTR ERV1 -5436 1162 1112 809 197 3 0 chr3 154097829 154098124 -63939034 + (CA)n Simple_repeat Simple_repeat 1 295 0 443 98 0 0 chr3 154098495 154098556 -63938602 + MER94 DNA DNA 72 132 -2 829 164 86 7 chr3 154098811 154098963 -63938195 - FAM SINE Alu -8 167 4 247 216 68 14 chr3 154099063 154099137 -63938021 - L1MB8 LINE L1 -392 5772 5695 1974 122 0 0 chr3 154099286 154099573 -63937585 + AluSx SINE Alu 1 287 -25 192 152 0 0 chr3 154099573 154099606 -63937552 + (TA)n Simple_repeat Simple_repeat 2 34 0 921 100 31 0 chr3 154099735 154099865 -63937293 - AluSg SINE Alu -176 134 1 278 350 43 7 chr3 154100101 154100241 -63936917 + L3 LINE CR1 1425 1569 -8 197 343 30 0 chr3 154100280 154100347 -63936811 - L2 LINE L2 -2997 317 249 2311 66 3 0 chr3 154100395 154100683 -63936475 + AluSp SINE Alu 1 289 -24 1078 108 6 6 chr3 154100687 154100879 -63936279 + AluSg/x SINE Alu 127 318 0 2159 96 7 0 chr3 154100898 154101191 -63935967 + AluSx SINE Alu 1 295 -17 966 231 66 4 chr3 154101362 154101604 -63935554 - L1ME LINE L1 -316 5805 5549 1270 230 20 113 chr3 154102561 154103056 -63934102 + L1ME3A LINE L1 5698 6146 -24 298 236 219 8 chr3 154103431 154103554 -63933604 + MIR SINE MIR 106 254 -8 300 255 76 83 chr3 154103557 154103702 -63933456 - MIR SINE MIR -114 148 5 203 246 0 35 chr3 154103758 154103815 -63933343 - L2 LINE L2 -262 3051 2997 1879 147 3 7 chr3 154103972 154104279 -63932879 - AluSx SINE Alu -6 306 1 264 100 0 0 chr3 154104374 154104414 -63932744 + (TG)n Simple_repeat Simple_repeat 2 41 0 622 207 72 119 chr3 154104828 154105079 -63932079 - MIR SINE MIR -3 259 21 1956 122 0 7 chr3 154105701 154106013 -63931145 - AluSx SINE Alu 0 310 1 2221 105 3 0 chr3 154107064 154107370 -63929788 - AluSp SINE Alu -5 308 2 2192 82 0 0 chr3 154107382 154107697 -63929461 - AluY SINE Alu 0 315 1 1333 168 0 0 chr3 154107708 154107928 -63929230 - AluSg/x SINE Alu -10 302 83 1035 127 12 0 chr3 154108262 154108427 -63928731 + AluSg/x SINE Alu 134 300 -10 790 230 19 0 chr3 154109175 154109336 -63927822 - MER96 DNA MER1_type? -5 170 7 583 247 84 0 chr3 154109517 154109683 -63927475 + MIR SINE MIR 71 250 -12 598 168 76 23 chr3 154109949 154110080 -63927078 - MER53 DNA DNA -51 138 1 739 152 37 37 chr3 154110605 154110796 -63926362 - LTR37A LTR ERV1 -18 408 218 1509 177 54 26 chr3 154110801 154111137 -63926021 + MLT1B LTR MaLR 1 390 0 435 206 144 0 chr3 154111149 154111246 -63925912 - LTR37A LTR ERV1 -257 169 59 213 39 0 0 chr3 154112327 154112353 -63924805 + (CA)n Simple_repeat Simple_repeat 1 26 0 315 180 66 16 chr3 154112399 154112460 -63924698 + MER58A DNA MER1_type 4 67 -40 260 149 0 0 chr3 154112457 154112504 -63924654 - AluJb SINE Alu -4 298 252 * 1039 142 0 44 chr3 154112504 154112687 -63924471 - AluJb SINE Alu -137 175 1 360 139 295 93 chr3 154112687 154112788 -63924370 + MER58A DNA MER1_type 58 192 -2228 2350 48 0 41 chr3 154112788 154113102 -63924056 - AluY SINE Alu -10 301 1 360 139 295 93 chr3 154113102 154113129 -63924029 + MER58A DNA MER1_type 192 212 -12 345 62 0 21 chr3 154113139 154113187 -63923971 - LTR37A LTR ERV1 -379 47 1 508 216 30 53 chr3 154163462 154163679 -63873479 + L1MA10 LINE L1 5954 6326 -5 408 254 124 11 chr3 154163717 154163894 -63873264 + L1MEd LINE L1 985 1181 -4938 1828 122 7 37 chr3 154163991 154164262 -63872896 + AluSx SINE Alu 1 263 -49 511 256 17 17 chr3 154164377 154164557 -63872601 - L1ME2 LINE L1 -11 6153 5974 909 158 36 0 chr3 154164623 154164788 -63872370 - AluSg/x SINE Alu -5 305 135 330 309 125 29 chr3 154164862 154165205 -63871953 + L1MEd LINE L1 2167 2542 -3587 2186 104 0 0 chr3 154165667 154165954 -63871204 - AluSg SINE Alu -23 287 1 427 321 98 18 chr3 154166215 154166541 -63870617 - L2 LINE L2 -210 3103 2764 363 288 80 45 chr3 154166560 154166824 -63870334 + L1MEd LINE L1 2669 2941 -3188 180 0 0 0 chr3 154166865 154166885 -63870273 + (TA)n Simple_repeat Simple_repeat 2 21 0 769 147 141 45 chr3 154166885 154167041 -63870117 - FRAM SINE Alu -11 165 1 2279 98 3 7 chr3 154167063 154167370 -63869788 + AluSq SINE Alu 1 306 -7 360 0 0 0 chr3 154167375 154167415 -63869743 + (CA)n Simple_repeat Simple_repeat 2 41 0 246 156 0 0 chr3 154167416 154167461 -63869697 + (TA)n Simple_repeat Simple_repeat 2 46 0 395 172 76 48 chr3 154167461 154167643 -63869515 - L1M2 LINE L1 -552 5569 5413 1602 107 24 142 chr3 154167707 154167909 -63869249 - AluSx SINE Alu 0 302 154 2402 97 0 0 chr3 154167909 154168217 -63868941 - AluSx SINE Alu 0 312 5 1602 107 24 142 chr3 154168217 154168352 -63868806 - AluSx SINE Alu -148 154 5 761 173 0 0 chr3 154168358 154168491 -63868667 - FLAM_C SINE Alu 0 133 1 5137 104 92 116 chr3 154169592 154170060 -63867098 - Tigger3b DNA MER2_type -1823 1205 727 814 154 0 23 chr3 154170060 154170190 -63866968 - FLAM_C SINE Alu -15 128 2 5137 104 92 116 chr3 154170190 154170827 -63866331 - Tigger3b DNA MER2_type -2301 727 1 248 103 0 26 chr3 154170868 154170907 -63866251 + Tigger3(Golem) DNA MER2_type 2201 2238 -791 2270 115 0 3 chr3 154170910 154171223 -63865935 - AluSx SINE Alu 0 312 1 1698 219 45 39 chr3 154171224 154171782 -63865376 - L1ME1 LINE L1 -284 5882 5322 984 190 100 10 chr3 154171803 154172003 -63865155 + AluJo SINE Alu 1 218 -94 334 83 0 0 chr3 154172005 154172053 -63865105 + AluSg/x SINE Alu 84 131 -169 1129 119 21 62 chr3 154172075 154172268 -63864890 + AluJo SINE Alu 108 292 -20 410 143 41 41 chr3 154172283 154172381 -63864777 - L1ME1 LINE L1 -859 5287 5190 26 30 0 0 chr3 154173334 154173367 -63863791 + AT_rich Low_complexity Low_complexity 1 33 0 2271 129 0 0 chr3 154173433 154173743 -63863415 - AluSx SINE Alu -2 310 1 1718 238 20 5 chr3 154173743 154174239 -63862919 + L1M4 LINE L1 4887 5391 -773 1204 126 141 34 chr3 154174376 154174555 -63862603 + MSTA LTR MaLR 138 355 -73 2595 105 6 3 chr3 154174555 154174918 -63862240 - THE1B LTR MaLR 0 364 1 1204 126 141 34 chr3 154174918 154175001 -63862157 + MSTA LTR MaLR 355 428 0 2067 222 36 36 chr3 154175453 154176039 -63861119 - L1ME2 LINE L1 -5 6159 5574 462 236 194 7 chr3 154176275 154176419 -63860739 + MER58A DNA MER1_type 30 200 -24 1686 199 0 17 chr3 154176510 154176812 -63860346 - AluJb SINE Alu -15 297 1 195 281 219 0 chr3 154176813 154176927 -63860231 - MIR3 SINE MIR -57 151 13 396 0 0 0 chr3 154177603 154177647 -63859511 + (TG)n Simple_repeat Simple_repeat 2 45 0 2279 128 3 0 chr3 154177780 154178092 -63859066 + AluSq SINE Alu 1 313 0 2433 62 41 18 chr3 154178699 154179074 -63858084 - MLT2A1 LTR ERVL 0 453 1 1645 142 6 95 chr3 154180005 154180322 -63856836 - AluJb SINE Alu -23 289 1 366 318 63 34 chr3 154180570 154180642 -63856516 - L2 LINE L2 -982 2332 2264 2369 95 0 7 chr3 154180642 154180948 -63856210 + AluSp SINE Alu 1 304 -9 366 318 63 34 chr3 154180948 154181114 -63856044 - L2 LINE L2 -1050 2264 2087 244 162 203 27 chr3 154181172 154181246 -63855912 + L1ME4a LINE L1 5957 6043 -78 873 73 121 0 chr3 154181777 154181901 -63855257 - MER85 DNA T2_type 0 139 1 2225 111 7 0 chr3 154182298 154182605 -63854553 - AluSq SINE Alu -4 309 1 301 313 26 43 chr3 154182632 154182747 -63854411 + MIR3 SINE MIR 48 160 -48 396 195 116 95 chr3 154182748 154182938 -63854220 + MER112 DNA MER1_type 2 195 -65 216 0 0 0 chr3 154183692 154183716 -63853442 + (A)n Simple_repeat Simple_repeat 1 24 0 2269 87 0 23 chr3 154183738 154184038 -63853120 - AluSx SINE Alu -19 293 1 338 221 142 37 chr3 154184077 154184267 -63852891 + L1ME LINE L1 5485 5694 -427 239 260 117 0 chr3 154184446 154184523 -63852635 - MER91A DNA MER1_type -10 186 101 462 246 53 26 chr3 154184538 154184652 -63852506 - MER91A DNA MER1_type -25 171 55 504 241 63 51 chr3 154185292 154185450 -63851708 + MIR3 SINE MIR 30 189 -19 23 33 0 0 chr3 154186310 154186340 -63850818 + GC_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr3 154186379 154186412 -63850746 + GC_rich Low_complexity Low_complexity 1 33 0 25 51 0 0 chr3 154186557 154186596 -63850562 + GC_rich Low_complexity Low_complexity 1 39 0 225 196 107 80 chr3 154186841 154186953 -63850205 + MIR3 SINE MIR 1 115 -93 261 83 0 0 chr3 154187745 154187781 -63849377 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 1560 95 92 108 chr3 154187877 154188183 -63848975 - AluSq SINE Alu -12 301 1 289 146 91 0 chr3 154188190 154188245 -63848913 - LTR54 LTR ERV1 -50 460 401 330 26 0 0 chr3 154188463 154188502 -63848656 + (CA)n Simple_repeat Simple_repeat 2 40 0 1627 153 33 36 chr3 154188599 154188869 -63848289 + AluJb SINE Alu 6 276 -36 216 0 0 0 chr3 154188869 154188893 -63848265 + (CAA)n Simple_repeat Simple_repeat 1 24 0 1627 153 33 36 chr3 154188893 154188929 -63848229 + AluJb SINE Alu 276 311 -1 2338 84 0 10 chr3 154188960 154189256 -63847902 + AluSg SINE Alu 1 293 -17 2267 96 0 10 chr3 154189278 154189579 -63847579 + AluSg1 SINE Alu 1 298 -11 2515 71 0 0 chr3 154189837 154190147 -63847011 - AluY SINE Alu -1 310 1 2109 99 36 3 chr3 154190149 154190452 -63846706 - AluSq SINE Alu 0 313 1 1769 90 0 0 chr3 154190452 154190675 -63846483 - AluSc SINE Alu -84 225 3 2297 93 3 0 chr3 154191536 154191838 -63845320 - AluSq SINE Alu -10 303 1 1081 126 0 0 chr3 154191953 154192112 -63845046 - AluSg/x SINE Alu 0 312 154 1631 120 9 0 chr3 154192295 154192520 -63844638 + AluSx SINE Alu 1 227 -85 2483 78 0 0 chr3 154192520 154192826 -63844332 + AluSc SINE Alu 1 306 -3 22 0 0 0 chr3 154192844 154192866 -63844292 + AT_rich Low_complexity Low_complexity 1 22 0 1325 175 89 12 chr3 154192897 154193154 -63844004 + AluJo SINE Alu 17 293 -19 2061 126 0 10 chr3 154193887 154194181 -63842977 + AluSx SINE Alu 1 291 -21 2403 117 99 33 chr3 154194328 154194888 -63842270 + MER4E LTR ERV1 2 779 0 341 184 66 0 chr3 154195549 154195625 -63841533 - AluJ/FLAM SINE Alu -221 81 1 2336 76 7 10 chr3 154195629 154195798 -63841360 - AluY SINE Alu -10 301 132 2358 46 56 3 chr3 154195798 154196082 -63841076 - AluY SINE Alu -12 299 1 2336 76 7 10 chr3 154196082 154196214 -63840944 - AluY SINE Alu -179 132 1 2316 106 0 3 chr3 154196336 154196647 -63840511 - AluSq SINE Alu -3 310 1 334 70 0 0 chr3 154196665 154196708 -63840450 + AluJ/FLAM SINE Alu 26 68 -234 3925 38 0 0 chr3 154196809 154197303 -63839855 + L1PA2 LINE L1 5711 6204 0 271 308 0 13 chr3 154197322 154197400 -63839758 + L1ME4a LINE L1 5446 5522 -2286 237 269 39 77 chr3 154197402 154197532 -63839626 - L2 LINE L2 -9 3304 3180 2482 90 0 0 chr3 154197652 154197963 -63839195 - AluY SINE Alu 0 311 1 345 288 180 17 chr3 154198058 154198291 -63838867 + L1ME4a LINE L1 5599 5869 -252 22 56 0 0 chr3 154198329 154198365 -63838793 + AT_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chr3 154198432 154198467 -63838691 + AT_rich Low_complexity Low_complexity 1 35 0 2356 101 0 3 chr3 154198509 154198817 -63838341 + AluSg SINE Alu 2 308 -2 1618 157 24 27 chr3 154199801 154200095 -63837063 - AluJo SINE Alu -18 294 2 267 119 24 0 chr3 154200164 154200206 -63836952 + L1ME1 LINE L1 6120 6162 -4 2573 259 119 27 chr3 154200335 154201346 -63835812 + L2 LINE L2 1573 2676 -638 864 171 86 0 chr3 154201347 154201522 -63835636 + Charlie5 DNA MER1_type 5 194 -2418 867 155 17 155 chr3 154201526 154201663 -63835495 + Charlie5 DNA MER1_type 2352 2506 -118 2052 122 35 0 chr3 154201663 154201950 -63835208 - AluSg SINE Alu -12 298 2 2197 111 7 7 chr3 154201954 154202252 -63834906 - AluSx SINE Alu -14 298 1 867 155 17 155 chr3 154202252 154202406 -63834752 + Charlie5 DNA MER1_type 2509 2607 -17 1073 268 114 17 chr3 154202421 154203004 -63834154 + L2 LINE L2 2667 3313 0 2452 82 0 0 chr3 154203197 154203502 -63833656 - AluSg SINE Alu -5 305 1 2038 127 0 3 chr3 154203590 154203895 -63833263 - AluSq SINE Alu 0 304 1 1687 156 75 0 chr3 154204109 154204391 -63832767 - AluJo SINE Alu -7 305 3 2217 97 3 29 chr3 154204704 154205014 -63832144 - AluSq SINE Alu -11 302 1 2039 127 0 26 chr3 154205904 154206211 -63830947 + AluSg SINE Alu 1 299 -11 1809 189 0 3 chr3 154206352 154206648 -63830510 + AluJo SINE Alu 1 295 -17 273 313 121 0 chr3 154207854 154207953 -63829205 + MER5A DNA MER1_type 55 165 -24 2050 95 7 4 chr3 154208490 154208764 -63828394 + AluSg SINE Alu 1 275 -35 2054 125 0 20 chr3 154208881 154209184 -63827974 - AluSx SINE Alu -15 297 1 1753 140 43 0 chr3 154209507 154209785 -63827373 - AluJb SINE Alu -22 290 1 28 0 0 47 chr3 154210408 154210428 -63826730 + AT_rich Low_complexity Low_complexity 1 20 -21 2374 97 0 0 chr3 154210428 154210728 -63826430 + AluSq SINE Alu 1 300 -13 28 0 0 47 chr3 154210728 154210750 -63826408 + AT_rich Low_complexity Low_complexity 20 41 0 1218 99 0 0 chr3 154211508 154211669 -63825489 + AluSp SINE Alu 137 297 -16 604 111 10 40 chr3 154211722 154211807 -63825351 + AluY SINE Alu 2 85 -226 1465 92 0 0 chr3 154211807 154211992 -63825166 + AluY SINE Alu 44 228 -83 604 111 10 40 chr3 154211992 154212005 -63825153 + AluY SINE Alu 85 97 -214 201 154 0 0 chr3 154212005 154212044 -63825114 + A-rich Low_complexity Low_complexity 1 39 0 28 48 0 0 chr3 154212974 154213016 -63824142 + AT_rich Low_complexity Low_complexity 1 42 0 276 53 0 0 chr3 154213171 154213209 -63823949 + (TCTCCC)n Simple_repeat Simple_repeat 1 38 0 22 56 0 0 chr3 154214552 154214588 -63822570 + AT_rich Low_complexity Low_complexity 1 36 0 297 29 0 0 chr3 154214599 154214633 -63822525 - U2 snRNA snRNA -154 34 1 187 218 55 55 chr3 154215211 154215266 -63821892 + L3 LINE CR1 1512 1566 -11 429 267 0 0 chr3 154215466 154215552 -63821606 - L2 LINE L2 -11 3302 3217 290 257 109 40 chr3 154215698 154215799 -63821359 + L2 LINE L2 3201 3308 -5 2795 13 0 0 chr3 154216427 154216731 -63820427 - AluYa5 SINE Alu -6 305 2 306 179 71 0 chr3 154216960 154217016 -63820142 - L2 LINE L2 0 3272 3213 435 323 64 52 chr3 154217726 154217771 -63819387 + L2 LINE L2 2071 2114 -1200 1653 169 29 35 chr3 154217771 154218085 -63819073 - AluJo SINE Alu 0 312 1 435 323 64 52 chr3 154218085 154218383 -63818775 + L2 LINE L2 2114 2418 -896 1043 170 4 115 chr3 154218530 154218604 -63818554 - MER3 DNA MER1_type 0 209 128 1978 118 10 7 chr3 154218604 154218892 -63818266 + AluSx SINE Alu 1 289 -23 1043 170 4 115 chr3 154218892 154219052 -63818106 - MER3 DNA MER1_type -81 128 1 287 203 31 0 chr3 154219434 154219498 -63817660 - MLT1K LTR MaLR -18 570 505 2458 75 0 10 chr3 154219781 154220089 -63817069 - AluSp SINE Alu -8 305 1 2226 76 38 7 chr3 154220408 154220696 -63816462 - AluY SINE Alu -14 297 1 256 279 0 15 chr3 154220843 154220911 -63816247 + MER94 DNA DNA 6 72 -62 242 309 56 71 chr3 154221212 154221288 -63815870 - MIR SINE MIR -128 134 59 2086 131 60 34 chr3 154221288 154221639 -63815519 + THE1B LTR MaLR 1 360 -4 242 309 56 71 chr3 154221639 154221688 -63815470 - MIR SINE MIR -203 59 11 248 355 29 83 chr3 154222008 154222321 -63814837 + L2 LINE L2 2977 3272 0 867 266 67 50 chr3 154222871 154223247 -63813911 - L2 LINE L2 -1 3312 2931 274 299 102 0 chr3 154223488 154223655 -63813503 - L1ME LINE L1 -276 5845 5662 2402 97 0 0 chr3 154223793 154224103 -63813055 + AluY SINE Alu 1 310 -1 601 106 12 0 chr3 154224506 154224591 -63812567 + AluY SINE Alu 2 87 -223 2059 83 0 0 chr3 154224591 154224845 -63812313 + AluY SINE Alu 44 297 -14 1066 194 7 81 chr3 154224995 154225268 -63811890 - AluJb SINE Alu -59 253 1 833 147 141 45 chr3 154225290 154225446 -63811712 + FRAM SINE Alu 1 165 -11 180 0 0 0 chr3 154225446 154225466 -63811692 + (TA)n Simple_repeat Simple_repeat 2 21 0 335 303 76 42 chr3 154225507 154225771 -63811387 - L1M4 LINE L1 -3188 2958 2686 428 321 98 18 chr3 154225790 154226116 -63811042 + L2 LINE L2 2764 3103 -210 505 291 115 50 chr3 154226599 154227015 -63810143 - L1ME LINE L1 -386 5735 5293 410 156 0 73 chr3 154227018 154227114 -63810044 - L1MC3 LINE L1 -256 7529 7441 * 745 153 0 24 chr3 154227110 154227234 -63809924 - AluJb SINE Alu -8 304 184 2154 231 95 21 chr3 154227252 154227845 -63809313 + L1MCc LINE L1 655 1365 -5058 225 0 0 0 chr3 154227845 154227870 -63809288 + (CA)n Simple_repeat Simple_repeat 2 26 0 2154 231 95 21 chr3 154227870 154227963 -63809195 + L1MCc LINE L1 1365 1450 -4973 1423 189 20 51 chr3 154228046 154228160 -63808998 + AluJo SINE Alu 6 122 -190 2357 87 3 10 chr3 154228160 154228460 -63808698 - AluSp SINE Alu -15 298 1 1423 189 20 51 chr3 154228460 154228641 -63808517 + AluJo SINE Alu 122 292 -20 779 252 9 10 chr3 154228705 154228885 -63808273 + MER77 LTR ERV1 407 601 -4 1323 208 51 19 chr3 154228935 154229029 -63808129 - L1ME LINE L1 -890 5256 5166 2872 107 3 0 chr3 154229029 154229392 -63807766 + THE1B LTR MaLR 1 364 0 1323 208 51 19 chr3 154229392 154229610 -63807548 - L1ME LINE L1 -980 5166 4934 1523 184 7 18 chr3 154229711 154229988 -63807170 + AluSx SINE Alu 39 312 0 1853 169 10 0 chr3 154230116 154230406 -63806752 - AluJb SINE Alu -19 293 1 455 267 68 7 chr3 154230436 154230582 -63806576 + MIR SINE MIR 90 244 -18 2862 208 66 20 chr3 154230713 154231527 -63805631 + L1M4 LINE L1 3689 4540 -1606 2292 82 26 10 chr3 154231527 154231831 -63805327 + AluSx SINE Alu 1 309 -3 2335 84 0 16 chr3 154231954 154232262 -63804896 + AluY SINE Alu 1 303 -8 956 138 0 0 chr3 154232264 154232394 -63804764 + AluSg/x SINE Alu 159 288 -24 1878 207 35 42 chr3 154232405 154232629 -63804529 + L1M4 LINE L1 4528 4752 -1394 1212 134 22 78 chr3 154232629 154232798 -63804360 - MER20 DNA MER1_type 0 219 65 1972 112 61 0 chr3 154232798 154233076 -63804082 + AluSx SINE Alu 1 295 -17 1212 134 22 78 chr3 154233076 154233138 -63804020 - MER20 DNA MER1_type -154 65 1 1878 207 35 42 chr3 154233138 154233384 -63803774 + L1M4 LINE L1 4752 4996 -1150 1787 168 38 0 chr3 154233384 154233676 -63803482 + AluJo SINE Alu 1 303 -9 1878 207 35 42 chr3 154233676 154233726 -63803432 + L1M4 LINE L1 4996 5045 -1101 2186 79 13 26 chr3 154233796 154234101 -63803057 + AluY SINE Alu 1 301 -10 338 169 14 14 chr3 154234137 154234208 -63802950 - FLAM_A SINE Alu 0 133 63 2269 98 0 13 chr3 154234332 154234637 -63802521 + AluSq SINE Alu 1 301 -12 2823 97 26 46 chr3 154234737 154235190 -63801968 - LTR56 LTR ERV1 -1 444 1 226 158 35 35 chr3 154236032 154236089 -63801069 - L1MC5 LINE L1 -36 7925 7869 2188 110 0 32 chr3 154236451 154236761 -63800397 + AluSx SINE Alu 1 300 -12 2355 90 0 19 chr3 154236914 154237224 -63799934 + AluSq SINE Alu 1 304 -9 315 293 246 16 chr3 154237423 154237614 -63799544 - MIR SINE MIR 0 262 28 1131 73 0 7 chr3 154237703 154237840 -63799318 + AluSx SINE Alu 1 136 -176 2414 85 0 7 chr3 154237840 154238147 -63799011 + AluSc SINE Alu 1 305 -4 1339 111 21 0 chr3 154238833 154239022 -63798136 + AluSx SINE Alu 118 310 0 2615 34 0 3 chr3 154239027 154239325 -63797833 + AluY SINE Alu 1 297 -14 2343 76 3 7 chr3 154239333 154239636 -63797522 + AluSp SINE Alu 2 303 -10 327 104 0 0 chr3 154239724 154239772 -63797386 + (GAAAA)n Simple_repeat Simple_repeat 2 49 0 2229 99 0 26 chr3 154239776 154240078 -63797080 + AluSc SINE Alu 1 294 -15 291 319 82 33 chr3 154240433 154240615 -63796543 - L2 LINE L2 -1425 1889 1699 441 200 122 0 chr3 154240625 154240740 -63796418 - L1MB7 LINE L1 -19 6165 6037 944 249 90 3 chr3 154240760 154241061 -63796097 + L1M4 LINE L1 4504 4830 -1316 2216 115 0 3 chr3 154241061 154241356 -63795802 + AluSx SINE Alu 1 294 -18 846 169 39 0 chr3 154241367 154241497 -63795661 + AluJo SINE Alu 2 136 -176 2202 117 0 0 chr3 154241505 154241804 -63795354 + AluSx SINE Alu 1 299 -13 1956 225 38 16 chr3 154241809 154242316 -63794842 + L1M4 LINE L1 4799 5316 -830 251 227 0 0 chr3 154242549 154242593 -63794565 + AluJ/monomer SINE Alu 1 44 -259 954 77 8 0 chr3 154242693 154242810 -63794348 - AluSp SINE Alu -195 118 1 667 252 84 13 chr3 154242836 154243074 -63794084 - L2 LINE L2 -1106 2208 1954 682 229 34 23 chr3 154243240 154243415 -63793743 - MLT1K LTR MaLR -8 580 404 819 182 15 0 chr3 154243473 154243605 -63793553 - AluJo SINE Alu -177 135 2 1965 89 7 26 chr3 154244139 154244409 -63792749 + AluSq SINE Alu 1 265 -48 226 205 0 0 chr3 154244417 154244456 -63792702 - AluJ/monomer SINE Alu -262 40 2 1525 169 29 7 chr3 154244542 154244821 -63792337 - AluJo SINE Alu -27 285 1 346 275 233 0 chr3 154244839 154245075 -63792083 - L1ME LINE L1 -320 5784 5494 329 277 95 22 chr3 154245080 154245217 -63791941 - L1ME LINE L1 -636 5468 5322 240 205 39 39 chr3 154245631 154245709 -63791449 + L1MA9 LINE L1 6205 6282 -30 2310 109 3 0 chr3 154246898 154247202 -63789956 + AluSq SINE Alu 1 305 -8 1285 169 16 28 chr3 154247284 154247533 -63789625 + L1MA9 LINE L1 6058 6303 -9 2331 100 0 0 chr3 154247583 154247882 -63789276 + AluSq SINE Alu 1 299 -14 609 246 123 30 chr3 154248239 154248442 -63788716 - MIR SINE MIR -8 254 33 770 208 0 21 chr3 154248725 154248869 -63788289 - AluJb SINE Alu -18 294 154 349 270 80 54 chr3 154249041 154249393 -63787765 - L1M4 LINE L1 -3498 2648 2288 2427 90 0 3 chr3 154249422 154249734 -63787424 - AluSq SINE Alu -2 311 1 886 125 15 0 chr3 154249734 154249870 -63787288 - L1MB3 LINE L1 -41 6142 6005 1132 62 0 7 chr3 154249870 154250015 -63787143 + L1PA4 LINE L1 6012 6155 0 2187 84 0 14 chr3 154250259 154250574 -63786584 - AluSc SINE Alu 0 311 1 403 188 94 21 chr3 154250871 154250896 -63786262 - MIR SINE MIR -79 183 161 2422 58 0 3 chr3 154250896 154251191 -63785967 + AluY SINE Alu 1 294 -17 403 188 94 21 chr3 154251191 154251261 -63785897 - MIR SINE MIR -101 161 81 1292 173 0 27 chr3 154251433 154251653 -63785505 + AluSx SINE Alu 54 267 -45 1458 164 69 25 chr3 154251678 154251952 -63785206 + AluJb SINE Alu 1 286 -26 332 312 54 18 chr3 154252026 154252395 -63784763 - L1ME LINE L1 -1343 4786 4402 * 2065 183 97 35 chr3 154252379 154252423 -63784735 - L1MB7 LINE L1 0 6184 6144 2013 131 0 29 chr3 154252423 154252729 -63784429 - AluY SINE Alu -14 297 1 2065 183 97 35 chr3 154252729 154253162 -63783996 - L1MB7 LINE L1 -40 6144 5672 2207 127 7 0 chr3 154253162 154253461 -63783697 - AluSx SINE Alu -11 301 1 2065 183 97 35 chr3 154253461 154253489 -63783669 - L1MB7 LINE L1 -512 5672 5647 271 265 142 68 chr3 154253985 154254319 -63782839 - L1ME LINE L1 -5684 435 11 21 0 0 0 chr3 154254337 154254358 -63782800 + AT_rich Low_complexity Low_complexity 1 21 0 245 250 22 33 chr3 154254475 154254567 -63782591 + CT-rich Low_complexity Low_complexity 2 92 0 762 263 193 22 chr3 154254569 154254926 -63782232 - HAL1 LINE L1 -1555 952 535 1215 230 36 33 chr3 154255018 154255322 -63781836 - AluJo SINE Alu -7 305 1 180 322 68 25 chr3 154255558 154255676 -63781482 - L2 LINE L2 -248 3065 2943 351 264 0 0 chr3 154255702 154255774 -63781384 + L2 LINE L2 3201 3272 0 193 189 0 0 chr3 154256239 154256276 -63780882 - MIR SINE MIR 0 262 226 266 107 393 0 chr3 154256315 154256371 -63780787 - MER116 DNA Mariner -1 79 2 248 364 34 0 chr3 154256589 154256677 -63780481 + L2 LINE L2 3128 3218 -54 2063 121 28 0 chr3 154256909 154257199 -63779959 - AluSx SINE Alu -14 298 1 262 341 53 18 chr3 154257394 154257564 -63779594 - MER5A DNA MER1_type -13 176 1 2403 72 3 3 chr3 154257962 154258254 -63778904 - AluSp SINE Alu -20 293 2 256 221 142 9 chr3 154258950 154259063 -63778095 + MIR3 SINE MIR 27 154 -54 2202 116 3 0 chr3 154259574 154259867 -63777291 + AluSg SINE Alu 1 294 -16 1446 95 0 0 chr3 154260231 154260420 -63776738 - AluSg/x SINE Alu -2 308 120 198 217 87 0 chr3 154260867 154260913 -63776245 + L2 LINE L2 3221 3270 -2 2256 85 7 3 chr3 154261086 154261381 -63775777 + AluSx SINE Alu 1 296 -16 2159 39 108 7 chr3 154261648 154261927 -63775231 + AluY SINE Alu 1 307 -4 2015 150 7 0 chr3 154262633 154262933 -63774225 - AluJo SINE Alu -10 302 1 1532 30 0 0 chr3 154266458 154266626 -63770532 - L1PA3 LINE L1 0 6155 5988 2271 96 36 0 chr3 154266715 154267016 -63770142 + AluSp SINE Alu 1 312 -1 2095 112 54 0 chr3 154267185 154267481 -63769677 + AluSx SINE Alu 1 312 0 2109 139 0 7 chr3 154268639 154268934 -63768224 - AluSx SINE Alu -19 293 1 770 152 25 55 chr3 154269051 154269131 -63768027 + L1M4 LINE L1 5254 5335 -843 2045 90 0 0 chr3 154269131 154269387 -63767771 + AluSx SINE Alu 36 291 -21 770 152 25 55 chr3 154269387 154269495 -63767663 + L1M4 LINE L1 5335 5436 -742 1366 141 24 52 chr3 154269496 154269744 -63767414 + AluJo SINE Alu 40 280 -32 391 264 0 1 chr3 154269778 154269865 -63767293 + L1M4 LINE L1 5428 5505 -669 2100 130 13 3 chr3 154269865 154270173 -63766985 + AluSx SINE Alu 1 311 -1 274 231 77 0 chr3 154270250 154270315 -63766843 - MER5C DNA MER1_type -252 72 3 530 249 26 87 chr3 154270511 154270740 -63766418 - L1MEc LINE L1 -4584 1812 1598 24 53 0 0 chr3 154271085 154271123 -63766035 + AT_rich Low_complexity Low_complexity 1 38 0 180 256 0 0 chr3 154271157 154271196 -63765962 - L3b LINE CR1 -4 1579 1541 * 211 322 56 0 chr3 154271163 154271253 -63765905 - MIR3 SINE MIR -14 194 100 1657 105 152 8 chr3 154271698 154271955 -63765203 + AluSg1 SINE Alu 1 294 -15 183 80 0 0 chr3 154271955 154271980 -63765178 + (TA)n Simple_repeat Simple_repeat 1 25 0 195 296 41 65 chr3 154272401 154272570 -63764588 - L2 LINE L2 -221 3051 2887 1148 128 16 87 chr3 154273070 154273312 -63763846 - LTR54 LTR ERV1 -5 505 281 1148 147 103 0 chr3 154273296 154273500 -63763658 - LTR54 LTR ERV1 -273 237 13 2052 73 3 92 chr3 154273500 154273828 -63763330 - AluSg SINE Alu -11 299 1 2135 133 13 0 chr3 154273988 154274289 -63762869 - AluSx SINE Alu -7 305 1 883 276 18 4 chr3 154274388 154274616 -63762542 + MIR SINE MIR 3 233 -29 2168 106 3 7 chr3 154275437 154275738 -63761420 - AluSg1 SINE Alu -9 300 1 636 91 16 48 chr3 154275782 154275968 -63761190 + (TA)n Simple_repeat Simple_repeat 1 180 0 698 104 28 30 chr3 154275992 154276359 -63760799 + (TA)n Simple_repeat Simple_repeat 1 366 0 563 65 65 23 chr3 154276372 154276589 -63760569 + (TA)n Simple_repeat Simple_repeat 1 226 0 2403 88 0 3 chr3 154277235 154277540 -63759618 + AluSp SINE Alu 1 304 -9 2108 111 0 0 chr3 154277614 154277893 -63759265 + AluSg SINE Alu 1 279 -31 180 0 0 0 chr3 154277893 154277913 -63759245 + (T)n Simple_repeat Simple_repeat 1 20 0 27 22 0 22 chr3 154278340 154278359 -63758799 + AT_rich Low_complexity Low_complexity 1 19 -25 2286 101 0 0 chr3 154278359 154278646 -63758512 + AluSg SINE Alu 1 287 -23 27 22 0 22 chr3 154278646 154278671 -63758487 + AT_rich Low_complexity Low_complexity 19 44 0 467 161 57 8 chr3 154279186 154279310 -63757848 + CT-rich Low_complexity Low_complexity 2 131 0 890 213 29 0 chr3 154279310 154279484 -63757674 - FRAM SINE Alu -1 175 1 607 113 0 0 chr3 154279771 154279851 -63757307 - AluSp/q SINE Alu -23 290 211 181 111 0 0 chr3 154279955 154279982 -63757176 + MIR SINE MIR 114 140 -68 1899 183 0 0 chr3 154280160 154280461 -63756697 - AluJb SINE Alu -11 301 1 214 209 48 105 chr3 154281751 154281856 -63755302 + MIR SINE MIR 107 205 -57 425 267 26 0 chr3 154281899 154282015 -63755143 + MER94 DNA DNA 2 120 -14 2296 105 0 3 chr3 154282171 154282476 -63754682 + AluSx SINE Alu 1 304 -8 2084 107 17 14 chr3 154282587 154282876 -63754282 + AluSq SINE Alu 1 290 -23 869 150 15 0 chr3 154282893 154283026 -63754132 - FAM SINE Alu -37 148 14 2449 82 0 16 chr3 154283288 154283603 -63753555 + AluSg SINE Alu 1 310 0 2347 91 7 10 chr3 154285575 154285883 -63751275 + AluSq SINE Alu 1 307 -6 276 239 56 0 chr3 154286051 154286122 -63751036 + L2 LINE L2 1755 1829 -1485 1130 273 79 29 chr3 154286243 154286802 -63750356 - L1ME3A LINE L1 -219 5951 5508 3899 157 20 50 chr3 154286831 154287510 -63749648 - L1MB7 LINE L1 -13 6171 5516 1870 142 18 3 chr3 154287510 154287792 -63749366 - AluSx SINE Alu -26 286 1 3899 157 20 50 chr3 154287792 154287879 -63749279 - L1MB7 LINE L1 -668 5516 5428 584 111 78 0 chr3 154287913 154288003 -63749155 - FRAM SINE Alu -30 146 50 2257 105 0 0 chr3 154288153 154288449 -63748709 + AluSx SINE Alu 1 296 -16 453 239 26 26 chr3 154288986 154289103 -63748055 - L2 LINE L2 0 3313 3197 4018 100 24 52 chr3 154289159 154289684 -63747474 + Tigger3b DNA MER2_type 2 540 -2488 2330 92 0 0 chr3 154289684 154289978 -63747180 - AluSx SINE Alu -18 294 1 4018 100 24 52 chr3 154289978 154289989 -63747169 + Tigger3b DNA MER2_type 540 550 -2478 1708 177 16 13 chr3 154289989 154290294 -63746864 - AluJb SINE Alu -6 306 1 4018 100 24 52 chr3 154290294 154290427 -63746731 + Tigger3b DNA MER2_type 550 653 -578 1040 172 16 0 chr3 154290427 154290619 -63746539 - L1MA4 LINE L1 -79 6221 6027 1990 128 30 7 chr3 154290629 154290925 -63746233 - AluSx SINE Alu -9 303 1 3529 122 17 16 chr3 154290930 154291510 -63745648 + Tigger3b DNA MER2_type 652 1232 0 251 160 138 32 chr3 154291513 154291607 -63745551 - Charlie7 DNA MER1_type -72 2540 2437 298 335 81 20 chr3 154291844 154292041 -63745117 - L2 LINE L2 -655 2659 2451 1090 182 43 9 chr3 154292098 154292355 -63744803 + MER33 DNA MER1_type 1 254 -70 617 87 0 43 chr3 154292520 154292612 -63744546 - HY1 scRNA scRNA -24 88 1 262 267 124 29 chr3 154292984 154293089 -63744069 + MIR SINE MIR 88 202 -60 4101 146 56 39 chr3 154293382 154293444 -63743714 + L1MB3 LINE L1 5262 5321 -862 1868 130 60 3 chr3 154293444 154293728 -63743430 + AluSx SINE Alu 1 300 -12 4101 146 56 39 chr3 154293728 154294305 -63742853 + L1MB3 LINE L1 5321 5920 -263 2174 103 17 0 chr3 154294305 154294595 -63742563 + AluSc SINE Alu 1 295 -14 4101 146 56 39 chr3 154294595 154294771 -63742387 + L1MB3 LINE L1 5920 6092 -91 342 173 0 0 chr3 154295026 154295078 -63742080 - MER66A LTR ERV1 -140 338 287 1947 139 31 0 chr3 154295332 154295626 -63741532 + AluJo SINE Alu 1 303 -9 1306 176 53 13 chr3 154295689 154295991 -63741167 + L1M4 LINE L1 4978 5291 -855 842 210 12 6 chr3 154296030 154296221 -63740937 + L1M4 LINE L1 5489 5684 -471 1874 229 57 7 chr3 154296416 154297050 -63740108 - L1ME3A LINE L1 -154 6016 5336 885 254 38 51 chr3 154297018 154297349 -63739809 - L1ME3A LINE L1 -1794 4352 4018 * 243 0 0 0 chr3 154297349 154297376 -63739782 + (TG)n Simple_repeat Simple_repeat 2 28 0 1759 149 4 4 chr3 154297379 154297660 -63739498 - AluSx SINE Alu -31 281 1 885 254 38 51 chr3 154297660 154297718 -63739440 - L1ME3A LINE L1 -2130 4016 3964 479 260 71 54 chr3 154297869 154298015 -63739143 - L1M4 LINE L1 -1977 4169 4027 243 0 0 0 chr3 154298015 154298042 -63739116 + (TG)n Simple_repeat Simple_repeat 2 28 0 1591 178 4 4 chr3 154298045 154298326 -63738832 - AluJb SINE Alu -31 281 1 479 260 71 54 chr3 154298326 154298471 -63738687 - L1M4 LINE L1 -2120 4026 3869 2165 86 59 0 chr3 154298740 154299030 -63738128 - AluSc SINE Alu -2 307 1 2045 128 0 0 chr3 154299971 154300274 -63736884 - AluSx SINE Alu 0 303 1 1477 127 174 0 chr3 154300378 154300614 -63736544 - AluSx SINE Alu -35 277 1 2031 130 0 3 chr3 154300855 154301160 -63735998 + AluY SINE Alu 1 304 0 1973 124 35 0 chr3 154301556 154301838 -63735320 + AluSx SINE Alu 1 292 -20 2111 139 3 0 chr3 154301840 154302217 -63734941 + AluSx SINE Alu 1 378 0 223 277 7 70 chr3 154302907 154303036 -63734122 + MER5B DNA MER1_type 72 178 0 1363 109 0 0 chr3 154303129 154303313 -63733845 + AluSg/x SINE Alu 129 312 0 241 226 32 0 chr3 154304248 154304310 -63732848 + (TATG)n Simple_repeat Simple_repeat 4 67 0 24 32 0 0 chr3 154304794 154304825 -63732333 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr3 154304836 154304857 -63732301 + AT_rich Low_complexity Low_complexity 1 21 0 2132 118 7 0 chr3 154305694 154305991 -63731167 + AluSq SINE Alu 1 299 -14 469 263 166 5 chr3 154305991 154306196 -63730962 - L1ME4a LINE L1 -261 5860 5623 225 197 79 40 chr3 154306381 154306457 -63730701 + L1MC5 LINE L1 7794 7872 -89 212 258 0 48 chr3 154307637 154307651 -63729507 + GA-rich Low_complexity Low_complexity 4 17 -45 2233 132 0 0 chr3 154307651 154307961 -63729197 + AluSx SINE Alu 1 310 -2 212 258 0 48 chr3 154307961 154308008 -63729150 + GA-rich Low_complexity Low_complexity 17 62 0 284 325 63 24 chr3 154308069 154308195 -63728963 + L2 LINE L2 3142 3272 0 1867 130 7 42 chr3 154308408 154308716 -63728442 + AluSx SINE Alu 1 297 -15 2542 140 27 62 chr3 154309128 154309578 -63727580 + Tigger2a DNA MER2_type 1 434 0 2552 54 0 0 chr3 154309822 154310119 -63727039 - AluY SINE Alu -14 297 1 306 170 19 0 chr3 154310209 154310261 -63726897 - MLT1A2 LTR MaLR 0 374 322 1699 193 22 20 chr3 154310261 154310621 -63726537 - MLT1A1 LTR MaLR -3 464 1 5649 205 97 35 chr3 154310628 154311940 -63725218 - MLT1A1-int LTR MaLR -7 1728 336 1069 161 143 105 chr3 154311956 154312075 -63725083 - AluJo SINE Alu -15 297 184 2368 102 0 0 chr3 154312075 154312379 -63724779 - AluSx SINE Alu -8 304 1 1069 161 143 105 chr3 154312379 154312545 -63724613 - AluJo SINE Alu -128 184 1 2053 162 15 0 chr3 154312546 154312886 -63724272 - MLT1A1-int LTR MaLR -1389 346 2 903 193 89 50 chr3 154312887 154313089 -63724069 - MLT1A1 LTR MaLR 0 365 156 2110 110 10 0 chr3 154313094 154313384 -63723774 - AluY SINE Alu -17 294 2 1018 98 8 0 chr3 154313384 154313516 -63723642 - AluSc SINE Alu -176 133 1 679 204 16 8 chr3 154313522 154313666 -63723492 - MLT1A1 LTR MaLR -216 149 1 1978 123 31 14 chr3 154315462 154315755 -63721403 - AluJb SINE Alu -12 300 3 1805 163 10 7 chr3 154316880 154317181 -63719977 - AluJo SINE Alu -10 302 1 1954 140 23 0 chr3 154317189 154317489 -63719669 - AluSx SINE Alu -5 307 1 3788 114 13 30 chr3 154317878 154318413 -63718745 - MER1A DNA MER1_type -1 526 1 820 241 11 0 chr3 154318481 154318655 -63718503 - MER5B DNA MER1_type 0 178 3 290 119 134 15 chr3 154319125 154319192 -63717966 - L1MCa LINE L1 -4362 2064 1990 201 265 20 0 chr3 154319216 154319265 -63717893 + (TATG)n Simple_repeat Simple_repeat 4 53 0 212 258 144 21 chr3 154319291 154319388 -63717770 - MIR SINE MIR -87 175 67 219 277 108 0 chr3 154319526 154319591 -63717567 + L2 LINE L2 3176 3247 -25 347 277 55 103 chr3 154319604 154319845 -63717313 - L3 LINE CR1 -518 1059 829 2303 96 6 10 chr3 154319845 154320158 -63717000 + AluSx SINE Alu 1 312 0 347 277 55 103 chr3 154320158 154320169 -63716989 - L3 LINE CR1 -748 829 819 354 328 73 35 chr3 154320232 154320714 -63716444 + L1M3 LINE L1 4896 5395 -751 2480 83 0 0 chr3 154320744 154321046 -63716112 + AluSg SINE Alu 1 302 -8 8368 12 1 1 chr3 154321047 154322065 -63715093 + L1PA2 LINE L1 5183 6200 0 227 333 0 13 chr3 154322088 154322166 -63714992 + L1M3 LINE L1 5446 5522 -2286 237 269 39 77 chr3 154322168 154322298 -63714860 - L2 LINE L2 -9 3304 3180 2429 90 0 3 chr3 154322418 154322730 -63714428 - AluY SINE Alu 0 311 1 1692 176 3 42 chr3 154323340 154323652 -63713506 + AluJb SINE Alu 1 300 -12 2408 94 3 3 chr3 154323658 154323967 -63713191 + AluSx SINE Alu 3 311 -1 375 208 26 0 chr3 154323968 154324045 -63713113 - L1ME LINE L1 -5986 84 6 286 309 92 13 chr3 154324051 154324206 -63712952 + L1M3 LINE L1 5667 5844 -336 15204 122 24 8 chr3 154324494 154326833 -63710325 + L1MA3 LINE L1 9 2429 -5136 1632 106 0 0 chr3 154326833 154327050 -63710108 + AluSg/x SINE Alu 83 299 -11 15204 122 24 8 chr3 154327050 154327694 -63709464 + L1MA3 LINE L1 2429 3061 -4504 2199 111 0 10 chr3 154327696 154327993 -63709165 - AluSx SINE Alu -18 294 1 14681 157 30 13 chr3 154327993 154329678 -63707480 + L1MA3 LINE L1 3317 4971 -2753 3608 122 2 15 chr3 154329678 154330212 -63706946 + MER1A DNA MER1_type 1 527 0 14681 157 30 13 chr3 154330212 154332645 -63704513 + L1MA3 LINE L1 4971 7518 -206 2162 124 20 0 chr3 154332645 154332943 -63704215 - AluSx SINE Alu -8 304 1 14681 157 30 13 chr3 154332943 154333154 -63704004 + L1MA3 LINE L1 7518 7724 0 2676 198 122 43 chr3 154333908 154334669 -63702489 - MER21B LTR ERV1 0 863 43 441 183 0 0 chr3 154334672 154334743 -63702415 - MER21B LTR ERV1 -774 89 19 247 218 51 26 chr3 154334750 154334828 -63702330 - MER21B LTR ERV1 -767 96 17 335 260 14 0 chr3 154334847 154334920 -63702238 - MER21B LTR ERV1 -773 90 17 1059 115 232 6 chr3 154334922 154335202 -63701956 - MER7A DNA MER2_type -1 336 1 2035 144 3 7 chr3 154335224 154335530 -63701628 - AluJb SINE Alu -7 305 1 766 245 117 38 chr3 154335627 154335917 -63701241 + L2 LINE L2 3000 3312 -1 1764 134 102 7 chr3 154336047 154336330 -63700828 - AluSg SINE Alu 0 310 1 993 200 0 0 chr3 154336337 154336502 -63700656 - FRAM SINE Alu 0 166 2 2211 103 7 3 chr3 154336564 154336856 -63700302 - AluSx SINE Alu -18 294 2 517 219 46 6 chr3 154336954 154337167 -63699991 + L1MDb LINE L1 1140 1361 -5048 182 244 70 70 chr3 154337173 154337259 -63699899 - L2 LINE L2 -508 2806 2721 456 191 191 9 chr3 154337910 154338015 -63699143 + FLAM_A SINE Alu 1 124 -9 2199 135 0 0 chr3 154338278 154338589 -63698569 - AluSx SINE Alu -1 311 1 1420 124 0 40 chr3 154339089 154339314 -63697844 + AluSg/x SINE Alu 87 302 -10 1669 109 181 31 chr3 154339368 154339661 -63697497 - MER1B DNA MER1_type 0 337 1 732 181 5 52 chr3 154339765 154339975 -63697183 - L1MC5 LINE L1 -48 7913 7714 2030 146 28 0 chr3 154340060 154340347 -63696811 - AluJb SINE Alu -17 295 1 1010 113 0 14 chr3 154341050 154341191 -63695967 + AluJb SINE Alu 156 294 -18 243 255 191 21 chr3 154341474 154341568 -63695590 + MIR SINE MIR 33 142 -120 281 130 0 19 chr3 154341668 154341722 -63695436 + Alu SINE Alu 247 299 -2 668 338 41 0 chr3 154341722 154342015 -63695143 + L2 LINE L2 2228 2532 -782 2359 85 0 0 chr3 154342381 154342676 -63694482 - AluSq SINE Alu -18 295 1 21 0 0 0 chr3 154343360 154343381 -63693777 + AT_rich Low_complexity Low_complexity 1 21 0 698 243 55 15 chr3 154343883 154344085 -63693073 - MIR SINE MIR 0 262 53 3475 181 61 111 chr3 154344114 154344958 -63692200 + L1MC4 LINE L1 6800 7558 -484 2295 98 0 22 chr3 154344958 154345275 -63691883 + AluSx SINE Alu 2 311 -1 3475 181 61 111 chr3 154345275 154345737 -63691421 + L1MC4 LINE L1 7558 8041 -1 886 86 93 62 chr3 154345890 154346052 -63691106 - L1PA8 LINE L1 -1 6171 6005 546 273 122 49 chr3 154346371 154346867 -63690291 + L1M4 LINE L1 2605 3134 -3012 412 277 160 0 chr3 154346922 154347041 -63690117 + MIR3 SINE MIR 4 141 -67 239 291 129 50 chr3 154347274 154347515 -63689643 + MLT1J LTR MaLR 25 284 -227 454 213 169 22 chr3 154347825 154347961 -63689197 + MIR SINE MIR 90 245 -17 240 315 45 34 chr3 154348168 154348257 -63688901 - L2 LINE L2 0 3272 3183 307 284 37 0 chr3 154349046 154349180 -63687978 - L1ME4a LINE L1 -22 6099 5961 2418 93 0 7 chr3 154349223 154349533 -63687625 - AluSg SINE Alu -2 308 1 569 303 66 5 chr3 154349593 154349804 -63687354 - MIR SINE MIR -36 226 3 22 94 0 0 chr3 154349827 154349891 -63687267 + AT_rich Low_complexity Low_complexity 1 64 0 1160 132 32 23 chr3 154350056 154350211 -63686947 + MER65C LTR ERV1 233 392 -69 2300 107 0 0 chr3 154350211 154350511 -63686647 - AluSx SINE Alu -12 300 1 1160 132 32 23 chr3 154350511 154350575 -63686583 + MER65C LTR ERV1 392 454 -7 324 234 11 32 chr3 154350585 154350679 -63686479 - L1ME4a LINE L1 -1981 5827 5736 752 273 109 67 chr3 154350721 154351200 -63685958 + L2 LINE L2 2779 3268 -4 2083 119 10 0 chr3 154351335 154351630 -63685528 - AluSx SINE Alu -14 298 1 1699 91 52 0 chr3 154351787 154352018 -63685140 - AluSq SINE Alu -70 243 1 3527 204 50 3 chr3 154352022 154353231 -63683927 + L1MB8 LINE L1 4894 6157 -21 2294 100 3 0 chr3 154353596 154353887 -63683271 + AluSp SINE Alu 1 292 -21 1030 172 0 0 chr3 154353892 154354049 -63683109 + FRAM SINE Alu 1 156 -20 1043 256 172 56 chr3 154354060 154354681 -63682477 + MER21B LTR ERV1 22 714 -149 2240 122 0 0 chr3 154354788 154355091 -63682067 - AluSx SINE Alu -9 303 1 307 225 135 11 chr3 154355879 154355968 -63681190 + MER58A DNA MER1_type 1 100 -7 30 0 0 0 chr3 154356904 154356934 -63680224 + AT_rich Low_complexity Low_complexity 1 30 0 796 95 0 0 chr3 154356934 154357039 -63680119 - U6 snRNA snRNA -2 105 1 589 164 87 0 chr3 154357044 154357148 -63680010 - FLAM_C SINE Alu -18 125 13 2375 83 3 13 chr3 154357779 154358092 -63679066 - AluSp SINE Alu -2 311 2 2434 85 0 3 chr3 154358712 154359019 -63678139 - AluSq SINE Alu -7 306 1 852 177 85 0 chr3 154359308 154359472 -63677686 + MER20 DNA MER1_type 41 218 -1 430 196 58 29 chr3 154359932 154360105 -63677053 + (TA)n Simple_repeat Simple_repeat 2 179 0 2264 115 0 0 chr3 154360192 154360488 -63676670 - AluSx SINE Alu -16 296 1 2097 85 3 69 chr3 154361346 154361663 -63675495 + AluSq SINE Alu 1 296 -17 456 17 0 0 chr3 154362085 154362143 -63675015 - L1PA6 LINE L1 0 6154 6097 749 343 99 31 chr3 154362383 154363180 -63673978 + L2 LINE L2 925 1775 -1539 1404 241 126 13 chr3 154363293 154363978 -63673180 - L2 LINE L2 0 3313 2531 1780 158 40 10 chr3 154363980 154364283 -63672875 - AluJo SINE Alu 0 312 1 472 303 49 32 chr3 154364618 154364965 -63672193 - HAL1 LINE L1 -571 1936 1584 825 289 144 52 chr3 154364967 154365501 -63671657 - HAL1 LINE L1 -1027 1480 885 2136 133 7 0 chr3 154365501 154365803 -63671355 - AluSx SINE Alu -8 304 1 825 289 144 52 chr3 154365803 154365860 -63671298 - HAL1 LINE L1 -1622 885 835 1730 108 67 22 chr3 154366275 154366569 -63670589 - AluSg SINE Alu 0 306 1 253 383 70 9 chr3 154366663 154366778 -63670380 + L2 LINE L2 3119 3240 -32 298 337 40 83 chr3 154366864 154367214 -63669944 + L2 LINE L2 2560 2894 -420 256 304 43 43 chr3 154367248 154367363 -63669795 + L2 LINE L2 3096 3210 -62 25 65 0 0 chr3 154369626 154369672 -63667486 + AT_rich Low_complexity Low_complexity 1 46 0 346 241 75 40 chr3 154370260 154370434 -63666724 + MER104 DNA MER2_type 1 180 0 767 173 101 73 chr3 154370766 154370871 -63666287 - MER5A DNA MER1_type 0 189 75 2105 79 52 10 chr3 154370871 154371161 -63665997 - AluY SINE Alu -9 302 1 767 173 101 73 chr3 154371161 154371234 -63665924 - MER5A DNA MER1_type -114 75 6 2291 68 0 4 chr3 154371526 154371807 -63665351 - AluY SINE Alu -31 280 1 2085 98 24 7 chr3 154372189 154372476 -63664682 - AluSc SINE Alu -17 292 1 715 196 8 0 chr3 154373015 154373148 -63664010 - FLAM_C SINE Alu -1 142 9 2159 116 7 0 chr3 154373397 154373691 -63663467 + AluSx SINE Alu 2 297 -15 1804 138 0 0 chr3 154374038 154374292 -63662866 + AluSx SINE Alu 55 308 -4 36 53 0 0 chr3 154374802 154374859 -63662299 + AT_rich Low_complexity Low_complexity 1 57 0 2146 125 0 22 chr3 154376110 154376421 -63660737 + AluSx SINE Alu 1 304 -8 2336 75 7 3 chr3 154376425 154376720 -63660438 + AluY SINE Alu 1 296 -15 2244 108 3 0 chr3 154376735 154377031 -63660127 + AluSq SINE Alu 1 297 -16 1842 115 17 35 chr3 154377031 154377318 -63659840 + MSTC LTR MaLR 147 428 0 1231 251 121 13 chr3 154377320 154377782 -63659376 - L1MC4 LINE L1 -249 7793 7282 2168 99 17 0 chr3 154377802 154378096 -63659062 + AluSp SINE Alu 2 300 -13 1932 121 23 46 chr3 154378096 154378401 -63658757 + AluSq SINE Alu 1 298 -15 2050 114 7 10 chr3 154378411 154378701 -63658457 + AluSg SINE Alu 1 289 -21 535 158 0 0 chr3 154378723 154378799 -63658359 + AluJ/FLAM SINE Alu 2 77 -235 1307 191 118 4 chr3 154378924 154379186 -63657972 + AluJb SINE Alu 1 292 -20 2492 64 0 3 chr3 154380475 154380770 -63656388 + AluSc SINE Alu 1 294 -15 221 182 78 65 chr3 154381508 154381585 -63655573 - L2 LINE L2 -9 3263 3186 182 250 47 31 chr3 154381677 154381741 -63655417 + MIR3 SINE MIR 141 205 -3 593 204 48 59 chr3 154382640 154382826 -63654332 + MLT1E2 LTR MaLR 1 184 -442 735 196 172 34 chr3 154382894 154383103 -63654055 + MLT1E2 LTR MaLR 387 624 -2 338 182 39 13 chr3 154383182 154383259 -63653899 - MER5A DNA MER1_type -77 112 34 547 135 58 87 chr3 154383732 154383836 -63653322 + AluJb SINE Alu 129 229 -83 2004 122 7 43 chr3 154383862 154384166 -63652992 + AluSx SINE Alu 1 293 -19 180 0 0 0 chr3 154384169 154384189 -63652969 + (TA)n Simple_repeat Simple_repeat 2 21 0 2207 98 3 10 chr3 154384221 154384517 -63652641 + AluSx SINE Alu 1 294 -18 433 200 56 0 chr3 154384521 154384611 -63652547 - L2 LINE L2 -22 3291 3197 1098 90 0 0 chr3 154384899 154385033 -63652125 + AluSg SINE Alu 3 136 -174 1835 113 0 4 chr3 154385034 154385282 -63651876 + AluSg SINE Alu 58 304 -6 2196 75 48 10 chr3 154385289 154385584 -63651574 + AluY SINE Alu 1 306 -5 2020 115 0 0 chr3 154385625 154385886 -63651272 + AluSx SINE Alu 1 261 -51 1829 133 0 28 chr3 154385887 154386225 -63650933 + AluJo SINE Alu 6 335 0 687 139 0 19 chr3 154386736 154386844 -63650314 - FLAM_A SINE Alu -17 125 20 2476 73 3 0 chr3 154386937 154387240 -63649918 - AluY SINE Alu -7 304 1 2457 133 68 5 chr3 154387307 154387704 -63649454 + MSTB LTR MaLR 1 422 -4 2978 181 40 12 chr3 154387824 154388521 -63648637 + L1ME1 LINE L1 5168 5894 -272 278 333 157 9 chr3 154388860 154388968 -63648190 + MIR3 SINE MIR 38 161 -47 546 282 66 44 chr3 154389528 154389755 -63647403 - MIR SINE MIR -13 249 18 432 272 22 78 chr3 154390055 154390074 -63647084 - L2 LINE L2 -3 3310 3291 2533 88 0 0 chr3 154390074 154390382 -63646776 - AluSg SINE Alu -2 308 1 432 272 22 78 chr3 154390382 154390542 -63646616 - L2 LINE L2 -22 3291 3141 560 122 33 0 chr3 154390603 154390693 -63646465 - MER53 DNA DNA -1 188 96 1464 201 38 25 chr3 154390835 154391149 -63646009 + MLT1F1 LTR MaLR 249 566 -1 564 273 88 21 chr3 154391151 154391345 -63645813 - LTR16B LTR ERVL -257 207 1 24 53 0 0 chr3 154392257 154392295 -63644863 + AT_rich Low_complexity Low_complexity 1 38 0 2970 228 46 43 chr3 154392418 154393228 -63643930 - MER21B LTR ERV1 -51 812 1 2103 126 0 7 chr3 154393711 154394012 -63643146 - AluSx SINE Alu -13 299 1 542 193 0 0 chr3 154394354 154394437 -63642721 - AluJ/FLAM SINE Alu -228 84 2 256 228 53 0 chr3 154394578 154394635 -63642523 - L2 LINE L2 -2 3270 3211 31 26 0 0 chr3 154394708 154394746 -63642412 + AT_rich Low_complexity Low_complexity 1 38 0 230 303 57 0 chr3 154395381 154395503 -63641655 + L1M2 LINE L1 5363 5491 -800 2363 228 21 18 chr3 154395504 154396017 -63641141 + MLT2B3 LTR ERVL 1 515 -39 423 0 0 0 chr3 154396022 154396069 -63641089 + (CA)n Simple_repeat Simple_repeat 2 48 0 2378 162 55 24 chr3 154396070 154396490 -63640668 + Tigger2a DNA MER2_type 2 434 0 313 176 27 0 chr3 154396490 154396564 -63640594 + (TA)n Simple_repeat Simple_repeat 1 76 0 262 88 0 0 chr3 154396592 154396626 -63640532 + MLT2B3 LTR ERVL 487 520 0 2399 208 119 11 chr3 154396630 154397202 -63639956 + L1ME3A LINE L1 5494 6127 -43 275 253 104 81 chr3 154397246 154397725 -63639433 - L1ME4a LINE L1 -6 6115 5626 1740 158 11 0 chr3 154398069 154398354 -63638804 - AluSx SINE Alu 0 312 25 927 216 27 5 chr3 154398367 154398552 -63638606 + MER5A DNA MER1_type 1 189 0 1671 148 11 32 chr3 154399282 154399565 -63637593 - AluJb SINE Alu -18 294 18 300 27 0 0 chr3 154399617 154399654 -63637504 + (TG)n Simple_repeat Simple_repeat 2 38 0 1819 135 0 4 chr3 154399654 154399913 -63637245 - AluSx SINE Alu -28 284 27 2468 114 3 6 chr3 154400442 154400792 -63636366 - MER47A DNA MER2_type -16 350 2 4243 227 58 32 chr3 154400942 154401847 -63635311 + L1M4 LINE L1 3797 4751 -1395 1709 189 10 13 chr3 154401847 154402148 -63635010 + AluJo SINE Alu 1 300 -12 4243 227 58 32 chr3 154402148 154402596 -63634562 + L1M4 LINE L1 4751 5186 -960 1520 245 50 80 chr3 154402608 154402694 -63634464 - L1MC4a LINE L1 -674 5482 5395 1773 155 28 14 chr3 154402694 154402985 -63634173 - AluJb SINE Alu -17 295 1 1520 245 50 80 chr3 154402985 154403038 -63634120 - L1MC4a LINE L1 -761 5395 5342 2242 113 0 0 chr3 154403038 154403338 -63633820 - AluSg SINE Alu -8 302 3 1520 245 50 80 chr3 154403338 154403725 -63633433 - L1MC4a LINE L1 -814 5342 4945 2372 90 0 7 chr3 154403725 154404035 -63633123 - AluSq SINE Alu -5 308 1 2288 107 0 3 chr3 154404035 154404333 -63632825 - AluSx SINE Alu -15 297 1 1520 245 50 80 chr3 154404333 154404410 -63632748 - L1MC4a LINE L1 -1210 4946 5443 1520 162 40 44 chr3 154404410 154404706 -63632452 - AluJo SINE Alu -17 295 1 1520 245 50 80 chr3 154404706 154404848 -63632310 - L1MC4a LINE L1 -712 5444 5299 2118 122 0 3 chr3 154405288 154405584 -63631574 - AluSx SINE Alu -17 295 1 805 335 153 26 chr3 154405607 154406261 -63630897 - L2 LINE L2 -534 2780 2044 611 244 105 52 chr3 154406294 154406523 -63630635 - MIR SINE MIR -19 243 3 3173 167 31 32 chr3 154406585 154407232 -63629926 + L1MC3 LINE L1 6675 7320 -465 1106 165 6 16 chr3 154407232 154407414 -63629744 - AluJo SINE Alu -47 265 86 410 225 22 0 chr3 154407419 154407508 -63629650 + L1MC3 LINE L1 7667 7757 -28 253 315 63 97 chr3 154407666 154407806 -63629352 - L2 LINE L2 -81 3232 3089 2480 76 3 0 chr3 154407806 154408108 -63629050 + AluSx SINE Alu 1 303 -9 253 315 63 97 chr3 154408108 154408411 -63628747 - L2 LINE L2 -224 3089 2804 2174 126 0 0 chr3 154408443 154408737 -63628421 + AluSx SINE Alu 1 294 -18 827 154 0 39 chr3 154409349 154409479 -63627679 - FLAM_A SINE Alu -8 125 1 910 84 0 8 chr3 154410153 154410272 -63626886 + AluSp SINE Alu 14 131 -182 779 275 84 34 chr3 154410871 154411255 -63625903 - LTR16A LTR ERVL -14 443 19 258 275 128 0 chr3 154411278 154411387 -63625771 + L1ME3A LINE L1 5808 5930 -240 1937 129 7 26 chr3 154411387 154411553 -63625605 - AluSx SINE Alu -16 296 137 2198 92 0 20 chr3 154411553 154411856 -63625302 - AluSc SINE Alu -11 298 2 1937 129 7 26 chr3 154411856 154411991 -63625167 - AluSx SINE Alu -175 137 1 410 298 141 47 chr3 154412165 154413337 -63623821 + L1MD2 LINE L1 4077 5409 -953 1549 206 0 32 chr3 154413337 154413647 -63623511 + AluJo SINE Alu 1 300 -12 410 298 141 47 chr3 154413647 154413876 -63623282 + L1MD2 LINE L1 5409 5615 -747 225 94 0 0 chr3 154413906 154413938 -63623220 + (CA)n Simple_repeat Simple_repeat 1 32 0 336 255 31 20 chr3 154413939 154414037 -63623121 + L1MD2 LINE L1 5681 5779 -2029 509 115 0 0 chr3 154414592 154414670 -63622488 - AluSc SINE Alu -1 308 231 855 180 25 100 chr3 154414772 154415011 -63622147 + L1MD2 LINE L1 6089 6309 -50 1811 171 10 3 chr3 154415011 154415309 -63621849 - AluJo SINE Alu -12 300 1 913 258 67 24 chr3 154415309 154415607 -63621551 + MLT1C LTR MaLR 157 467 0 2181 113 3 0 chr3 154415876 154416167 -63620991 - AluSx SINE Alu -20 292 1 2303 92 0 3 chr3 154416761 154417056 -63620102 + AluSx SINE Alu 1 294 -18 27 0 0 0 chr3 154417544 154417571 -63619587 + AT_rich Low_complexity Low_complexity 1 27 0 734 326 57 27 chr3 154417624 154417825 -63619333 + HAL1b LINE L1 1 194 -1154 1909 147 7 7 chr3 154417825 154418118 -63619040 + AluSx SINE Alu 1 293 -19 734 326 57 27 chr3 154418118 154418440 -63618718 + HAL1b LINE L1 194 540 -808 353 219 0 0 chr3 154418446 154418519 -63618639 + L1M3 LINE L1 5551 5623 -560 1079 199 0 0 chr3 154418542 154418713 -63618445 + FAM SINE Alu 1 171 -4 2360 97 0 3 chr3 154418715 154419024 -63618134 + AluSg SINE Alu 1 308 -2 2436 88 0 0 chr3 154419027 154419333 -63617825 + AluY SINE Alu 1 306 -5 204 250 0 0 chr3 154420159 154420203 -63616955 - L2 LINE L2 0 3272 3229 1735 154 8 8 chr3 154420335 154420602 -63616556 - AluSx SINE Alu -45 267 1 892 117 0 0 chr3 154420738 154420866 -63616292 + AluSg/x SINE Alu 181 308 -2 1351 96 0 0 chr3 154421001 154421178 -63615980 + AluSg/x SINE Alu 131 307 -5 1066 202 6 0 chr3 154421899 154422072 -63615086 - FAM SINE Alu 0 175 2 30300 76 15 7 chr3 154422211 154428302 -63608856 - L1PA6 LINE L1 -1 6153 12 2053 139 7 0 chr3 154428344 154428638 -63608520 + AluSx SINE Alu 1 296 -16 8334 128 5 9 chr3 154428717 154429755 -63607403 + L1MA1 LINE L1 3958 4984 -1318 2216 116 0 0 chr3 154429755 154430047 -63607111 + AluSx SINE Alu 1 292 -20 8334 128 5 9 chr3 154430047 154430892 -63606266 + L1MA1 LINE L1 4984 5831 -471 2084 141 14 0 chr3 154430893 154431184 -63605974 + AluSx SINE Alu 1 295 -17 1949 131 7 0 chr3 154431317 154431636 -63605522 - AluJb SINE Alu 0 326 6 202 306 44 69 chr3 154431668 154431828 -63605330 - L2 LINE L2 -609 2705 2550 278 380 58 14 chr3 154432047 154432255 -63604903 + L3 LINE CR1 98 314 -1263 561 147 49 0 chr3 154432255 154432357 -63604801 + U6 snRNA snRNA 1 107 0 722 126 170 69 chr3 154432382 154432567 -63604591 + AluJo SINE Alu 125 312 0 549 306 98 29 chr3 154432652 154433129 -63604029 + L3 LINE CR1 430 939 -638 684 312 23 0 chr3 154433163 154433381 -63603777 - MIR SINE MIR -34 228 6 224 301 152 50 chr3 154433365 154433754 -63603404 + L3 LINE CR1 922 1409 -168 * 815 146 0 0 chr3 154433757 154433880 -63603278 + FLAM_A SINE Alu 13 135 -7 22 0 0 0 chr3 154436211 154436233 -63600925 + GC_rich Low_complexity Low_complexity 1 22 0 635 263 70 57 chr3 154437093 154437121 -63600037 - L2 LINE L2 -14 3299 3273 1623 124 109 0 chr3 154437121 154437387 -63599771 - AluJb SINE Alu -17 295 1 635 263 70 57 chr3 154437387 154437659 -63599499 - L2 LINE L2 -40 3273 2995 451 229 0 0 chr3 154487725 154487843 -63549315 - L1 LINE L1 -1869 4277 4160 361 143 0 0 chr3 154487856 154487919 -63549239 - AluSp/q SINE Alu -1 302 240 454 336 60 32 chr3 154488377 154488594 -63548564 + MIR SINE MIR 2 224 -38 290 329 66 47 chr3 154488609 154488822 -63548336 - L2 LINE L2 -643 2671 2455 252 100 0 0 chr3 154489057 154489097 -63548061 + (TG)n Simple_repeat Simple_repeat 2 41 0 2265 82 4 0 chr3 154489154 154489476 -63547682 + AluSc SINE Alu 1 323 0 1600 186 35 54 chr3 154490034 154490406 -63546752 + MLT1A1 LTR MaLR 1 365 0 1489 152 12 4 chr3 154491186 154491429 -63545729 - AluSx SINE Alu -18 294 50 2795 148 71 50 chr3 154491782 154492376 -63544782 + LTR9 LTR ERV1 7 612 0 356 202 43 21 chr3 154492420 154492514 -63544644 + HUERS-P3b LTR ERV1 38 133 -7285 255 182 0 18 chr3 154492522 154492577 -63544581 + HUERS-P3b LTR ERV1 1319 1372 -7547 * 11813 154 52 31 chr3 154492568 154493409 -63543749 + HUERS-P3 LTR ERV1 278 1100 -6318 1814 138 3 66 chr3 154493409 154493576 -63543582 - AluSq SINE Alu -13 300 161 2373 80 0 7 chr3 154493576 154493876 -63543282 - AluY SINE Alu -13 298 1 1814 138 3 66 chr3 154493876 154494028 -63543130 - AluSq SINE Alu -152 161 1 11813 154 52 31 chr3 154494028 154495152 -63542006 + HUERS-P3 LTR ERV1 1100 2301 -5117 185 0 40 0 chr3 154495152 154495177 -63541981 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 11813 154 52 31 chr3 154495177 154495527 -63541631 + HUERS-P3 LTR ERV1 2301 2642 -4776 2475 152 33 2 chr3 154495527 154495955 -63541203 - LTR8 LTR ERV1 -250 441 1 7930 112 11 55 chr3 154495955 154497414 -63539744 + HUERS-P3 LTR ERV1 1276 4390 -3028 1154 171 123 71 chr3 154497439 154497860 -63539298 - LTR7 LTR ERV1 -7 443 1 3696 124 11 25 chr3 154497860 154498467 -63538691 + LTR9 LTR ERV1 14 612 0 14435 123 29 15 chr3 154498469 154500894 -63536264 + HUERS-P3 LTR ERV1 4489 6946 -472 991 111 12 12 chr3 154500901 154501073 -63536085 + HUERS-P3 LTR ERV1 2388 2559 -2456 1211 136 5 0 chr3 154501229 154501427 -63535731 + HUERS-P3 LTR ERV1 8721 8919 0 3081 169 26 48 chr3 154501427 154502053 -63535105 + LTR9 LTR ERV1 1 612 0 297 276 155 26 chr3 154502105 154502221 -63534937 + MIR3 SINE MIR 15 145 -63 1711 164 16 26 chr3 154502226 154502530 -63534628 - AluJb SINE Alu -11 301 1 2333 79 3 0 chr3 154502536 154502826 -63534332 - AluY SINE Alu -20 291 1 22 0 0 0 chr3 154502836 154502858 -63534300 + AT_rich Low_complexity Low_complexity 1 22 0 38176 40 27 2 chr3 154503032 154507993 -63529165 + L1P LINE L1 1 5087 -1059 2293 107 2 17 chr3 154508120 154508543 -63528615 - L1P5 LINE L1 -542 5609 5193 7785 21 0 0 chr3 154508543 154509726 -63527432 + L1PA3 LINE L1 4973 6155 0 204 234 168 0 chr3 154510255 154510362 -63526796 + L2 LINE L2 2588 2712 -602 750 143 0 0 chr3 154510388 154510493 -63526665 + AluJb SINE Alu 1 105 -207 2062 112 3 54 chr3 154511283 154511417 -63525741 + AluSx SINE Alu 1 140 -172 2446 104 0 0 chr3 154511417 154511725 -63525433 + AluSc SINE Alu 1 308 -1 2062 112 3 54 chr3 154511725 154511903 -63525255 + AluSx SINE Alu 140 297 -15 323 244 39 13 chr3 154511976 154512054 -63525104 + MIR SINE MIR 157 236 -26 189 161 18 107 chr3 154512306 154512362 -63524796 - L3b LINE CR1 -289 1294 1244 2772 110 42 0 chr3 154513175 154513602 -63523556 - L1PA16 LINE L1 -9 6157 5713 984 148 86 0 chr3 154513611 154513773 -63523385 - AluJb SINE Alu -8 304 129 21 0 0 0 chr3 154513809 154513830 -63523328 + AT_rich Low_complexity Low_complexity 1 21 0 732 186 0 0 chr3 154513830 154513948 -63523210 - FLAM_C SINE Alu -25 118 1 13131 180 45 10 chr3 154514078 154515208 -63521950 + L1PB1 LINE L1 2704 3793 -3074 201 39 0 0 chr3 154515208 154515234 -63521924 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 13131 180 45 10 chr3 154515234 154516070 -63521088 + L1PB1 LINE L1 3793 4598 -2269 2104 110 7 36 chr3 154516070 154516379 -63520779 + AluSc SINE Alu 1 300 -9 13131 180 45 10 chr3 154516379 154517112 -63520046 + L1PB1 LINE L1 4598 5304 -1563 8122 73 11 1 chr3 154517112 154518172 -63518986 - MER11C LTR ERVK 0 1071 1 13131 180 45 10 chr3 154518172 154519051 -63518107 + L1PB1 LINE L1 5304 6451 -416 2344 105 0 3 chr3 154519051 154519357 -63517801 + AluSq SINE Alu 1 305 -8 13131 180 45 10 chr3 154519357 154519418 -63517740 + L1PB1 LINE L1 6451 6508 -359 233 253 0 20 chr3 154519420 154519519 -63517639 + (CATA)n Simple_repeat Simple_repeat 4 100 0 2554 98 0 0 chr3 154519527 154519884 -63517274 + L1PB1 LINE L1 6511 6867 0 1036 130 75 0 chr3 154519888 154520049 -63517109 + AluSg/x SINE Alu 129 301 -11 2054 121 24 0 chr3 154522663 154522953 -63514205 - AluSx SINE Alu -15 297 1 24 0 0 0 chr3 154523762 154523786 -63513372 + AT_rich Low_complexity Low_complexity 1 24 0 402 110 0 14 chr3 154524702 154524775 -63512383 - L1MA10 LINE L1 -1 6333 6262 1427 184 46 18 chr3 154525441 154525750 -63511408 + AluJb SINE Alu 1 317 0 202 391 78 0 chr3 154525845 154525973 -63511185 + L2 LINE L2 3176 3313 0 21 36 0 0 chr3 154526001 154526029 -63511129 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr3 154526480 154526505 -63510653 + AT_rich Low_complexity Low_complexity 1 25 0 315 291 106 62 chr3 154526751 154526930 -63510228 - MER5A DNA MER1_type 0 189 3 739 177 15 6 chr3 154527172 154527369 -63509789 + AluJb SINE Alu 1 275 -37 290 143 0 0 chr3 154528059 154528101 -63509057 + Alu SINE Alu 1 42 -261 1235 199 4 4 chr3 154528232 154528458 -63508700 - AluJb SINE Alu -86 226 1 312 192 0 0 chr3 154528571 154528633 -63508525 - Alu SINE Alu -254 48 2 190 274 0 20 chr3 154528634 154528685 -63508473 + MIR SINE MIR 58 107 -155 2192 93 13 26 chr3 154528725 154529036 -63508122 - AluSx SINE Alu -5 307 1 1303 266 121 69 chr3 154529084 154529433 -63507725 - HAL1 LINE L1 -137 2370 2041 1523 112 9 22 chr3 154529433 154529657 -63507501 - AluJb SINE Alu -6 306 86 1303 266 121 69 chr3 154529657 154530007 -63507151 - HAL1 LINE L1 -466 2041 1711 714 219 0 0 chr3 154530007 154530135 -63507023 + FLAM_C SINE Alu 1 128 -5 1303 266 121 69 chr3 154530135 154530590 -63506568 - HAL1 LINE L1 -796 1711 1155 609 257 227 48 chr3 154530669 154531000 -63506158 - HAL1 LINE L1 -1852 655 266 910 195 77 0 chr3 154532410 154532579 -63504579 + MER58A DNA MER1_type 43 224 0 22 80 0 0 chr3 154532671 154532721 -63504437 + AT_rich Low_complexity Low_complexity 1 50 0 4962 170 54 83 chr3 154532760 154533129 -63504029 - L1PB4 LINE L1 -13 6143 5765 327 85 0 0 chr3 154533129 154533176 -63503982 + (CA)n Simple_repeat Simple_repeat 2 48 0 4962 170 54 83 chr3 154533176 154534327 -63502831 - L1PB4 LINE L1 -391 5765 4718 2298 102 0 25 chr3 154534327 154534642 -63502516 - AluSx SINE Alu -5 307 1 4962 170 54 83 chr3 154534642 154535295 -63501863 - L1PB4 LINE L1 -1438 4718 4047 415 227 45 0 chr3 154535351 154535439 -63501719 + Charlie1 DNA MER1_type 1 92 -2669 1256 198 13 93 chr3 154535449 154535626 -63501532 - AluJb SINE Alu -23 289 99 1880 130 41 3 chr3 154535626 154535919 -63501239 + AluSx SINE Alu 1 304 -8 1256 198 13 93 chr3 154535919 154535946 -63501212 - AluJb SINE Alu -213 99 71 2322 84 0 0 chr3 154535946 154536233 -63500925 + AluSg SINE Alu 3 289 -21 1256 198 13 93 chr3 154536233 154536340 -63500818 - AluJb SINE Alu -241 71 2 282 147 0 168 chr3 154536414 154536509 -63500649 + Charlie1 DNA MER1_type 2210 2288 -473 1194 105 0 0 chr3 154536550 154536703 -63500455 - AluSx SINE Alu -159 153 1 579 202 107 28 chr3 154536703 154536881 -63500277 + Charlie1 DNA MER1_type 2274 2465 -296 572 152 125 18 chr3 154536920 154537032 -63500126 + FLAM_C SINE Alu 4 127 -16 21 71 0 0 chr3 154537056 154537098 -63500060 + AT_rich Low_complexity Low_complexity 1 42 0 926 154 27 21 chr3 154537106 154537294 -63499864 - L1MA4 LINE L1 -7 6293 6105 6607 38 1 12 chr3 154537307 154538129 -63499029 - L1PA4 LINE L1 0 6155 5343 12229 165 35 44 chr3 154538144 154538656 -63498502 - L1MA4 LINE L1 -507 5793 5278 345 115 33 16 chr3 154538656 154538717 -63498441 - L1PA16 LINE L1 -10 6156 6095 12229 165 35 44 chr3 154538717 154540904 -63496254 - L1MA4 LINE L1 -1022 5278 3078 2773 141 44 27 chr3 154540904 154541429 -63495729 - L1PB4 LINE L1 -7 6149 5616 12229 165 35 44 chr3 154541429 154541869 -63495289 - L1MA4 LINE L1 -3222 3078 2636 567 0 0 0 chr3 154541925 154541988 -63495170 + (TA)n Simple_repeat Simple_repeat 1 63 0 1530 171 25 21 chr3 154541994 154542275 -63494883 - AluJo SINE Alu -30 282 1 482 159 150 0 chr3 154542278 154542391 -63494767 + Charlie1 DNA MER1_type 2631 2760 -1 312 313 82 37 chr3 154542904 154543038 -63494120 - MIR SINE MIR -67 141 2 273 304 28 57 chr3 154543681 154543809 -63493349 - MIR3 SINE MIR -51 157 25 2117 94 7 36 chr3 154544028 154544335 -63492823 - AluSq SINE Alu -15 298 1 196 304 0 0 chr3 154544521 154544567 -63492591 - L2 LINE L2 -17 3255 3210 209 340 111 6 chr3 154544675 154544837 -63492321 - MIR SINE MIR 0 262 84 1881 153 10 3 chr3 154544995 154545290 -63491868 - AluJb SINE Alu -15 297 1 801 178 0 0 chr3 154545355 154545484 -63491674 + AluJ SINE Alu 1 129 -173 631 144 29 0 chr3 154546697 154546801 -63490357 + Charlie4 DNA MER1_type 37 143 -1818 1079 222 53 42 chr3 154546804 154547246 -63489912 + MLT1A2 LTR MaLR 4 372 -2 461 147 73 113 chr3 154547267 154547417 -63489741 + Charlie4 DNA MER1_type 1817 1960 -1 32 67 0 0 chr3 154547559 154547619 -63489539 + AT_rich Low_complexity Low_complexity 1 60 0 337 169 20 54 chr3 154547837 154547985 -63489173 + (TATATG)n Simple_repeat Simple_repeat 4 146 0 315 0 0 0 chr3 154547985 154548020 -63489138 + (CA)n Simple_repeat Simple_repeat 2 36 0 2244 91 7 17 chr3 154548058 154548356 -63488802 - AluSx SINE Alu -15 297 3 471 267 53 8 chr3 154548358 154548489 -63488669 - MIR SINE MIR -98 164 28 221 81 0 27 chr3 154549649 154549686 -63487472 + (GGAA)n Simple_repeat Simple_repeat 3 38 0 428 267 47 23 chr3 154549725 154549897 -63487261 + GA-rich Low_complexity Low_complexity 1 176 0 1098 236 77 53 chr3 154550329 154550706 -63486452 + L2 LINE L2 2927 3312 -1 822 178 7 0 chr3 154551024 154551176 -63485982 + L1MB7 LINE L1 226 378 -6382 16592 128 51 72 chr3 154551179 154552870 -63484288 + L1 LINE L1 432 2157 -5408 752 240 35 0 chr3 154552870 154553041 -63484117 + AluJ SINE Alu 134 310 -2 16592 128 51 72 chr3 154553041 154553290 -63483868 + L1 LINE L1 2157 2410 -5155 2294 83 3 3 chr3 154553290 154553578 -63483580 + AluSp SINE Alu 1 288 -25 16592 128 51 72 chr3 154553578 154554666 -63482492 + L1 LINE L1 2410 3564 -4001 1681 185 35 20 chr3 154554674 154555263 -63481895 + L1MB7 LINE L1 2721 3313 -3549 * 2354 149 39 2 chr3 154555262 154555704 -63481454 + L1 LINE L1 5646 6103 -1462 4206 195 45 83 chr3 154555903 154556451 -63480707 + L1MB7 LINE L1 5024 5591 -1309 587 204 0 0 chr3 154556451 154556554 -63480604 - FLAM_A SINE Alu -27 115 13 4206 195 45 83 chr3 154556554 154557549 -63479609 + L1MB7 LINE L1 5591 6552 -348 1923 155 20 12 chr3 154557549 154557816 -63479342 + MER2 DNA MER2_type 1 273 -71 2101 129 3 0 chr3 154557816 154558111 -63479047 - AluJb SINE Alu -16 296 1 1923 155 20 12 chr3 154558111 154558184 -63478974 + MER2 DNA MER2_type 273 344 0 4206 195 45 83 chr3 154558184 154558521 -63478637 + L1MB7 LINE L1 6552 6900 0 23 68 0 0 chr3 154558676 154558720 -63478438 + AT_rich Low_complexity Low_complexity 1 44 0 26 30 0 0 chr3 154558738 154558771 -63478387 + AT_rich Low_complexity Low_complexity 1 33 0 446 224 189 26 chr3 154558842 154558932 -63478226 - HAL1b LINE L1 -106 1242 1168 1916 155 0 3 chr3 154558932 154559228 -63477930 - AluSx SINE Alu -17 295 1 446 224 189 26 chr3 154559228 154559365 -63477793 - HAL1b LINE L1 -180 1168 978 227 289 0 0 chr3 154559552 154559604 -63477554 - HAL1b LINE L1 -458 890 839 21 0 0 0 chr3 154559660 154559681 -63477477 + AT_rich Low_complexity Low_complexity 1 21 0 949 123 0 7 chr3 154560132 154560270 -63476888 - AluJo SINE Alu -175 137 1 1802 153 3 10 chr3 154560283 154560584 -63476574 - AluJb SINE Alu -13 299 1 194 244 0 0 chr3 154560720 154560761 -63476397 - L2 LINE L2 -12 3260 3220 31 44 0 0 chr3 154560819 154560864 -63476294 + AT_rich Low_complexity Low_complexity 1 45 0 197 426 49 0 chr3 154561300 154561483 -63475675 - L2 LINE L2 -344 2970 2779 317 257 40 0 chr3 154561546 154561620 -63475538 - MIR3 SINE MIR -26 182 106 3164 231 62 106 chr3 154561632 154562911 -63474247 - L2 LINE L2 -337 2977 1756 21 36 0 0 chr3 154563311 154563339 -63473819 + AT_rich Low_complexity Low_complexity 1 28 0 229 253 0 25 chr3 154563901 154563980 -63473178 + T-rich Low_complexity Low_complexity 2 78 0 2003 140 0 13 chr3 154564063 154564363 -63472795 - AluSx SINE Alu -16 296 1 2747 191 32 41 chr3 154564719 154565431 -63471727 + L1PA16 LINE L1 4628 5333 -813 442 73 0 0 chr3 154565431 154565486 -63471672 + U6 snRNA snRNA 2 56 -51 31 0 0 0 chr3 154565496 154565527 -63471631 + AT_rich Low_complexity Low_complexity 1 31 0 4974 127 12 57 chr3 154565527 154565991 -63471167 + L1PA16 LINE L1 5315 5723 -443 1609 131 108 4 chr3 154565991 154566250 -63470908 - AluSx SINE Alu -26 286 1 4974 127 12 57 chr3 154566250 154566667 -63470491 + L1PA16 LINE L1 5723 6157 -9 27 29 0 0 chr3 154566761 154566795 -63470363 + AT_rich Low_complexity Low_complexity 1 34 0 1197 201 45 30 chr3 154567064 154567332 -63469826 - AluJo SINE Alu -36 276 5 228 221 81 81 chr3 154567660 154567796 -63469362 + L1ME4a LINE L1 5968 6103 -18 1638 185 7 17 chr3 154568850 154569147 -63468011 - AluJo SINE Alu -18 294 1 1956 142 0 22 chr3 154569171 154569487 -63467671 + AluSx SINE Alu 4 312 0 23 0 0 0 chr3 154570281 154570304 -63466854 + AT_rich Low_complexity Low_complexity 1 23 0 379 231 77 0 chr3 154570397 154570501 -63466657 - MIR SINE MIR -71 191 80 469 278 116 12 chr3 154570634 154570893 -63466265 + L2 LINE L2 1711 1996 -1318 * 545 319 38 88 chr3 154570868 154571185 -63465973 + L2 LINE L2 2935 3235 -37 705 276 125 6 chr3 154571660 154571971 -63465187 - L1ME3A LINE L1 -213 5957 5610 2352 75 0 32 chr3 154572003 154572311 -63464847 + AluY SINE Alu 1 298 -13 2700 210 89 65 chr3 154572332 154573371 -63463787 - L1ME1 LINE L1 -6 6160 5114 2119 94 18 67 chr3 154573377 154573570 -63463588 - AluSx SINE Alu 0 312 140 2239 109 0 0 chr3 154573570 154573853 -63463305 - AluSg SINE Alu -24 286 4 2119 94 18 67 chr3 154573853 154573987 -63463171 - AluSx SINE Alu -172 140 1 222 118 0 0 chr3 154574002 154574036 -63463122 + (CCCCCA)n Simple_repeat Simple_repeat 3 36 0 306 222 17 26 chr3 154574066 154574183 -63462975 + CT-rich Low_complexity Low_complexity 1 116 0 1700 173 19 26 chr3 154574183 154574495 -63462663 - AluJb SINE Alu -2 310 1 684 203 80 16 chr3 154574520 154574707 -63462451 - L1ME1 LINE L1 -1042 5104 4906 651 206 32 13 chr3 154574802 154574957 -63462201 - L1ME1 LINE L1 -1227 4919 4762 347 281 7 0 chr3 154574968 154575103 -63462055 + (TTTAG)n Simple_repeat Simple_repeat 5 140 0 998 183 30 26 chr3 154575108 154575338 -63461820 - L1ME1 LINE L1 -1387 4759 4529 373 261 225 0 chr3 154575447 154575615 -63461543 + MIR SINE MIR 34 238 -24 383 194 0 0 chr3 154575870 154575942 -63461216 - L1MB2 LINE L1 -36 6135 6064 21 36 0 0 chr3 154576616 154576644 -63460514 + AT_rich Low_complexity Low_complexity 1 28 0 33 25 0 0 chr3 154576799 154576839 -63460319 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr3 154576893 154576915 -63460243 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 154576972 154576993 -63460165 + AT_rich Low_complexity Low_complexity 1 21 0 597 234 88 38 chr3 154576997 154577258 -63459900 - L1ME3A LINE L1 -5 6165 5892 262 250 129 21 chr3 154577458 154577574 -63459584 + MIR SINE MIR 42 168 -65 520 255 141 28 chr3 154577849 154578104 -63459054 - L2 LINE L2 0 3313 3030 398 150 176 129 chr3 154578375 154578426 -63458732 + MER5A DNA MER1_type 17 64 -125 2209 115 3 0 chr3 154578426 154578731 -63458427 + AluSp SINE Alu 1 306 -7 398 150 176 129 chr3 154578731 154578833 -63458325 + MER5A DNA MER1_type 64 189 0 1745 153 67 0 chr3 154578965 154579247 -63457911 - AluJo SINE Alu -11 301 1 195 214 29 0 chr3 154579501 154579586 -63457572 + (TA)n Simple_repeat Simple_repeat 2 92 -15 2298 85 0 0 chr3 154579586 154579869 -63457289 - AluSx SINE Alu -29 283 1 195 214 29 0 chr3 154579869 154579886 -63457272 + (TA)n Simple_repeat Simple_repeat 92 107 0 26 0 0 0 chr3 154580254 154580280 -63456878 + AT_rich Low_complexity Low_complexity 1 26 0 685 258 49 57 chr3 154580290 154580534 -63456624 - MIR SINE MIR -15 247 6 2198 114 0 10 chr3 154580785 154581092 -63456066 + AluSx SINE Alu 1 304 -8 2357 88 3 3 chr3 154581184 154581491 -63455667 + AluSq SINE Alu 1 307 -6 21 36 0 0 chr3 154581633 154581661 -63455497 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr3 154582295 154582324 -63454834 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 833 173 56 6 chr3 154582337 154582568 -63454590 + AluJb SINE Alu 18 300 -12 832 279 103 82 chr3 154583166 154583718 -63453440 + HAL1 LINE L1 1 564 -1943 1157 257 51 42 chr3 154583752 154584161 -63452997 - LTR16A LTR ERVL -22 428 16 3786 241 107 54 chr3 154584182 154585125 -63452033 + HAL1 LINE L1 583 1475 -1032 2059 109 36 10 chr3 154585125 154585429 -63451729 + AluSx SINE Alu 1 312 0 3786 241 107 54 chr3 154585429 154586183 -63450975 + HAL1 LINE L1 1475 2370 -137 1263 157 143 91 chr3 154586197 154586636 -63450522 + MLT1C LTR MaLR 4 465 -2 279 133 0 0 chr3 154587376 154587421 -63449737 + (CA)n Simple_repeat Simple_repeat 1 45 0 267 223 29 137 chr3 154588306 154588445 -63448713 + L2 LINE L2 3190 3313 0 359 357 45 0 chr3 154588876 154589049 -63448109 + MER20B DNA MER1_type 32 214 -5 2086 217 88 56 chr3 154589843 154590407 -63446751 + HAL1 LINE L1 975 1571 -936 2066 98 30 34 chr3 154590407 154590704 -63446454 + AluSx SINE Alu 1 296 -16 2086 217 88 56 chr3 154590704 154590904 -63446254 + HAL1 LINE L1 1571 1763 -744 306 53 0 0 chr3 154591894 154591932 -63445226 - 5S rRNA rRNA -79 42 5 688 228 41 14 chr3 154591932 154592077 -63445081 - AluJo/FRAM SINE Alu -31 281 133 1365 197 41 41 chr3 154592079 154592373 -63444785 - AluJb SINE Alu -18 294 1 230 158 18 0 chr3 154592383 154592440 -63444718 - L1MD3 LINE L1 0 7995 7938 617 167 0 0 chr3 154592447 154592549 -63444609 + AluSg/x SINE Alu 208 309 0 3814 243 50 65 chr3 154592553 154592983 -63444175 - L1MC4 LINE L1 -70 7972 7537 1882 179 7 0 chr3 154592983 154593285 -63443873 - AluSx SINE Alu -8 304 1 3814 243 50 65 chr3 154593285 154594464 -63442694 - L1MC4 LINE L1 -505 7537 6388 21 0 0 0 chr3 154594625 154594646 -63442512 + AT_rich Low_complexity Low_complexity 1 21 0 840 234 100 17 chr3 154594959 154595198 -63441960 - MIR SINE MIR -3 259 1 2422 74 0 7 chr3 154595408 154595717 -63441441 + AluY SINE Alu 1 307 -4 2871 164 27 8 chr3 154596352 154596878 -63440280 + L1MB5 LINE L1 5450 5985 -189 943 199 44 0 chr3 154596905 154597086 -63440072 + MER58A DNA MER1_type 32 220 -4 1129 274 47 14 chr3 154597601 154598031 -63439127 + L1ME3A LINE L1 3643 4086 -2060 2555 225 64 50 chr3 154598047 154598887 -63438271 + L1ME3A LINE L1 5281 6132 -38 784 139 152 6 chr3 154598921 154599078 -63438080 - Tigger1 DNA MER2_type 0 2418 2239 2135 181 7 39 chr3 154599078 154599487 -63437671 + MSTB1 LTR MaLR 1 396 -36 2533 147 35 7 chr3 154599501 154599520 -63437638 - Tigger1 DNA MER2_type -175 2243 2226 2096 161 63 7 chr3 154599520 154599931 -63437227 + Tigger2a DNA MER2_type 1 434 0 2533 147 35 7 chr3 154599931 154600346 -63436812 - Tigger1 DNA MER2_type -192 2226 1797 1119 153 19 38 chr3 154600346 154600555 -63436603 + AluSx SINE Alu 1 205 -107 10567 127 38 22 chr3 154600672 154600943 -63436215 - Tigger1 DNA MER2_type -649 1769 1504 2171 101 0 0 chr3 154600943 154601221 -63435937 - AluSx SINE Alu -34 278 1 10567 127 38 22 chr3 154601221 154602691 -63434467 - Tigger1 DNA MER2_type -914 1504 1 1438 215 3 20 chr3 154602848 154603146 -63434012 + AluJo SINE Alu 1 293 -19 239 0 32 0 chr3 154603146 154603177 -63433981 + (TA)n Simple_repeat Simple_repeat 2 33 0 940 333 76 60 chr3 154603607 154603729 -63433429 + L2 LINE L2 659 778 -2536 7699 19 0 0 chr3 154603729 154605046 -63432112 - L1PA2 LINE L1 0 6155 4835 940 333 76 60 chr3 154605046 154605235 -63431923 + L2 LINE L2 778 963 -2351 2104 123 7 0 chr3 154605235 154605528 -63431630 - AluSx SINE Alu -17 295 1 940 333 76 60 chr3 154605528 154606093 -63431065 + L2 LINE L2 963 1550 -1764 294 330 230 24 chr3 154606940 154607231 -63429927 + L2 LINE L2 1749 2099 -1215 * 334 343 107 45 chr3 154607224 154607513 -63429645 + L2 LINE L2 2897 3203 -69 278 325 46 13 chr3 154607686 154607837 -63429321 - L2 LINE L2 0 3313 3158 1236 151 137 4 chr3 154609085 154609356 -63427802 + L1MA4 LINE L1 5987 6293 -7 1569 173 29 14 chr3 154609361 154609639 -63427519 + AluJo SINE Alu 1 282 -30 2105 134 0 7 chr3 154609769 154610068 -63427090 - AluJo SINE Alu -15 297 1 417 254 43 7 chr3 154610068 154610206 -63426952 + L1MC5 LINE L1 7277 7419 -542 1455 242 121 20 chr3 154610268 154610997 -63426161 + L1M4 LINE L1 4296 5152 -994 518 299 89 54 chr3 154611020 154611334 -63425824 + HAL1b LINE L1 342 666 -682 1601 129 106 0 chr3 154612065 154612343 -63424815 + AluSg SINE Alu 1 305 0 1947 109 20 17 chr3 154612916 154613210 -63423948 + AluSg SINE Alu 1 295 -15 191 317 144 42 chr3 154613212 154613379 -63423779 + L2 LINE L2 1771 1954 -1360 2307 112 0 0 chr3 154613661 154613966 -63423192 - AluSq SINE Alu -8 305 1 897 188 62 5 chr3 154613971 154614163 -63422995 - MER105 DNA DNA -1 203 1 21 36 0 0 chr3 154615712 154615740 -63421418 + AT_rich Low_complexity Low_complexity 1 28 0 305 306 113 34 chr3 154616928 154617193 -63419965 + L1 LINE L1 4551 4836 -1310 1718 168 13 3 chr3 154617636 154617946 -63419212 + L1 LINE L1 4789 5101 -1045 7914 120 26 109 chr3 154617946 154618012 -63419146 - Tigger4(Zombi) DNA MER2_type -1306 1425 1355 1506 183 47 4 chr3 154618012 154618286 -63418872 - AluJo SINE Alu -14 298 13 7914 120 26 109 chr3 154618286 154618814 -63418344 - Tigger4(Zombi) DNA MER2_type -1376 1355 784 180 0 0 0 chr3 154618814 154618834 -63418324 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2011 122 7 0 chr3 154618834 154619112 -63418046 - AluSx SINE Alu -32 280 1 7914 120 26 109 chr3 154619112 154620070 -63417088 - Tigger4(Zombi) DNA MER2_type -1945 786 1 4280 225 94 30 chr3 154620070 154621971 -63415187 - L1ME LINE L1 -381 5783 3731 2154 111 0 7 chr3 154621971 154622277 -63414881 - AluSc SINE Alu -5 304 1 4280 225 94 30 chr3 154622277 154622477 -63414681 - L1ME LINE L1 -2433 3731 3545 284 194 0 104 chr3 154622591 154622658 -63414500 - L1M4 LINE L1 -2018 4128 4069 6783 129 24 11 chr3 154622668 154623570 -63413588 - L1MA3 LINE L1 0 6305 5367 2276 87 27 0 chr3 154623570 154623870 -63413288 - AluSq SINE Alu -5 308 1 6783 129 24 11 chr3 154623870 154624535 -63412623 - L1MA3 LINE L1 -938 5367 4712 1363 235 35 6 chr3 154624708 154625209 -63411949 - MLT1H1 LTR MaLR -8 547 1 262 300 0 29 chr3 154825654 154825724 -63211434 + L2 LINE L2 3186 3253 -19 306 50 0 0 chr3 154825730 154825770 -63211388 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 259 237 53 149 chr3 154826171 154826285 -63210873 + L2 LINE L2 3170 3272 0 3751 98 8 0 chr3 154826444 154826953 -63210205 + LTR10D LTR ERV1 1 513 0 2841 91 15 10 chr3 154828987 154829381 -63207777 - L1PA10 LINE L1 -5 6163 5768 370 143 0 0 chr3 154829382 154829438 -63207720 - MLT1A1 LTR MaLR -309 56 1 1990 128 6 10 chr3 154829755 154830046 -63207112 + AluSx SINE Alu 1 292 -20 489 110 0 0 chr3 154830046 154830119 -63207039 + (TA)n Simple_repeat Simple_repeat 1 73 0 1990 128 6 10 chr3 154830119 154830140 -63207018 + AluSx SINE Alu 292 312 0 285 338 123 16 chr3 154830140 154830439 -63206719 - L2 LINE L2 -762 2552 2218 687 145 14 41 chr3 154830614 154830759 -63206399 - L1PB1 LINE L1 0 6151 6011 229 220 294 37 chr3 154831744 154831853 -63205305 - MER5A DNA MER1_type -1 188 52 1388 224 59 3 chr3 154833169 154833491 -63203667 + MER58B DNA MER1_type 2 341 0 389 289 84 9 chr3 154833634 154833780 -63203378 - MIR SINE MIR -22 186 31 266 292 138 15 chr3 154833895 154834025 -63203133 + MIR SINE MIR 78 223 -39 208 286 29 0 chr3 154834463 154834533 -63202625 + CT-rich Low_complexity Low_complexity 5 76 0 235 333 63 63 chr3 154834615 154834774 -63202384 + MIR SINE MIR 34 192 -70 340 333 36 36 chr3 154834974 154835112 -63202046 + MIR3 SINE MIR 3 140 -68 483 175 175 36 chr3 154835699 154835865 -63201293 - MIR SINE MIR 0 262 74 239 267 79 40 chr3 154836184 154836285 -63200873 - MIR SINE MIR -84 124 20 267 260 60 0 chr3 154836286 154836386 -63200772 - L3 LINE CR1 -239 1338 1233 506 267 57 28 chr3 154836397 154836573 -63200585 + MIR SINE MIR 2 182 -80 369 335 72 0 chr3 154836696 154836848 -63200310 + MIR SINE MIR 72 234 -28 241 229 43 14 chr3 154836952 154837022 -63200136 + MIR SINE MIR 82 153 -109 318 246 16 82 chr3 154837410 154837532 -63199626 - L2 LINE L2 -222 3050 2937 27 49 0 0 chr3 154837725 154837766 -63199392 + AT_rich Low_complexity Low_complexity 1 41 0 7337 124 6 15 chr3 154837766 154839247 -63197911 - L1MA1 LINE L1 0 6302 4836 2223 94 0 3 chr3 154839896 154840195 -63196963 - AluY SINE Alu -13 298 1 32 26 0 0 chr3 154840604 154840643 -63196515 + AT_rich Low_complexity Low_complexity 1 39 0 466 339 98 40 chr3 154840764 154841091 -63196067 - L1ME4a LINE L1 -237 5884 5539 252 0 0 0 chr3 154841281 154841309 -63195849 + (A)n Simple_repeat Simple_repeat 1 28 0 335 190 0 13 chr3 154842546 154842625 -63194533 + (CA)n Simple_repeat Simple_repeat 1 78 0 214 239 0 0 chr3 154842741 154842787 -63194371 + (TG)n Simple_repeat Simple_repeat 2 47 0 253 240 0 0 chr3 154842807 154842857 -63194301 - L2 LINE L2 -2 3311 3262 208 306 24 24 chr3 154842982 154843106 -63194052 - L2 LINE L2 -265 3048 2925 641 311 68 5 chr3 154843382 154843604 -63193554 - MIR SINE MIR -19 243 8 415 242 32 0 chr3 154843613 154843708 -63193450 - MIR SINE MIR -92 170 73 762 185 8 0 chr3 154843709 154843839 -63193319 - MER45A DNA AcHobo 0 178 48 271 358 25 0 chr3 154844013 154844133 -63193025 + MIR SINE MIR 29 151 -111 848 252 48 12 chr3 154844246 154844496 -63192662 - MIR SINE MIR -3 259 1 2007 197 51 14 chr3 154844926 154845357 -63191801 + MER74A LTR ERVL 1 447 -111 300 288 50 58 chr3 154846660 154846799 -63190359 - MIR SINE MIR -84 178 41 1977 120 0 0 chr3 154847023 154847299 -63189859 + AluSq SINE Alu 21 296 -17 312 320 157 0 chr3 154847300 154847453 -63189705 + MIR SINE MIR 80 256 -6 541 279 99 6 chr3 154847553 154847725 -63189433 - MIR SINE MIR -72 190 3 233 286 297 6 chr3 154848689 154848864 -63188294 - L2 LINE L2 -22 3250 3025 304 318 45 0 chr3 154849431 154849541 -63187617 - MIR SINE MIR -58 204 90 297 311 0 33 chr3 154849772 154849862 -63187296 + L2 LINE L2 3226 3312 -1 671 112 0 0 chr3 154850783 154850890 -63186268 + L1PA13 LINE L1 6056 6162 -1 306 0 0 0 chr3 154851066 154851100 -63186058 + (TG)n Simple_repeat Simple_repeat 1 34 0 247 345 92 7 chr3 154851706 154851848 -63185310 + MIR SINE MIR 5 158 -104 723 253 36 0 chr3 154851997 154852163 -63184995 - MER45A DNA AcHobo -5 173 2 519 254 4 8 chr3 154852361 154852544 -63184614 - MER41B LTR ERV1 -209 426 112 647 268 78 5 chr3 154852922 154853127 -63184031 - MIR SINE MIR -6 256 37 300 158 0 0 chr3 154853559 154853616 -63183542 + (CA)n Simple_repeat Simple_repeat 1 57 0 367 302 151 24 chr3 154854746 154854958 -63182200 - L2 LINE L2 -662 2652 2414 1343 134 9 9 chr3 154856383 154856615 -63180543 + L1MA6 LINE L1 6063 6294 -6 1313 251 28 9 chr3 154857421 154857747 -63179411 - MLT1I LTR MaLR -2 407 76 223 318 94 0 chr3 154857915 154858000 -63179158 + L2 LINE L2 3210 3302 -11 453 243 107 36 chr3 154858953 154859093 -63178065 + MIR3 SINE MIR 17 166 -42 319 288 197 30 chr3 154859123 154859321 -63177837 + MIR SINE MIR 22 252 -10 2042 80 33 0 chr3 154859369 154859680 -63177478 + AluSx SINE Alu 1 320 0 232 200 0 0 chr3 154860612 154860652 -63176506 - L2 LINE L2 -13 3300 3261 378 327 178 14 chr3 154861574 154861788 -63175370 - MIR SINE MIR -1 261 13 256 293 53 0 chr3 154861917 154861992 -63175166 + L2 LINE L2 3176 3254 -18 841 215 46 41 chr3 154863155 154863374 -63173784 + MIR SINE MIR 43 262 0 215 355 96 30 chr3 154863386 154863552 -63173606 - MIR SINE MIR -77 185 9 476 315 20 0 chr3 154863711 154863860 -63173298 + MIR SINE MIR 1 152 -110 260 376 18 9 chr3 154864359 154864468 -63172690 - MIR SINE MIR -69 139 30 536 300 83 43 chr3 154864889 154865395 -63171763 - L1ME4a LINE L1 -48 6073 5548 22 0 0 0 chr3 154865433 154865455 -63171703 + AT_rich Low_complexity Low_complexity 1 22 0 696 260 17 11 chr3 154865688 154865906 -63171252 - MLT1J2 LTR MaLR -218 228 4 333 265 114 38 chr3 154868537 154868669 -63168489 - MIR3 SINE MIR -51 157 16 201 133 48 0 chr3 154871497 154871537 -63165621 - MIR SINE MIR -78 130 79 1429 222 58 25 chr3 154871737 154872097 -63165061 - MLT1A2 LTR MaLR -2 372 1 290 293 50 97 chr3 154872375 154872634 -63164524 + L2 LINE L2 3026 3272 0 242 255 0 0 chr3 154872645 154872696 -63164462 + GA-rich Low_complexity Low_complexity 4 54 0 262 303 54 88 chr3 154873012 154873273 -63163885 - L2 LINE L2 0 3272 3021 197 308 90 0 chr3 154874368 154874446 -63162712 - L2 LINE L2 -30 3242 3158 315 273 161 14 chr3 154874629 154874772 -63162386 - Charlie8 DNA MER1_type -2230 187 24 2462 160 58 50 chr3 154876169 154876601 -63160557 + MLT1D LTR MaLR 1 439 -66 2298 92 0 52 chr3 154876601 154876929 -63160229 - AluY SINE Alu 0 311 1 2462 160 58 50 chr3 154876929 154876996 -63160162 + MLT1D LTR MaLR 439 504 -1 272 275 95 63 chr3 154877761 154877950 -63159208 + LTR16C LTR ERVL 260 454 -37 2408 82 3 3 chr3 154879510 154879814 -63157344 - AluY SINE Alu -7 304 1 269 316 82 13 chr3 154880355 154880513 -63156645 - MIR SINE MIR -6 256 88 224 280 0 27 chr3 154880793 154880868 -63156290 + L2 LINE L2 2986 3058 -214 21 0 0 0 chr3 154881059 154881080 -63156078 + AT_rich Low_complexity Low_complexity 1 21 0 1466 232 58 10 chr3 154881215 154881612 -63155546 + L1MB8 LINE L1 5762 6177 -1 674 129 29 7 chr3 154881628 154881768 -63155390 + GA-rich Low_complexity Low_complexity 4 146 0 718 230 73 28 chr3 154882238 154882595 -63154563 + L1ME LINE L1 570 942 -5128 375 322 20 10 chr3 154882604 154882806 -63154352 + L1ME LINE L1 965 1168 -4914 * 43797 48 6 1 chr3 154882804 154886630 -63150528 - L1PA4 LINE L1 0 6155 2282 198 0 0 0 chr3 154886630 154886652 -63150506 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 43797 48 6 1 chr3 154886652 154888946 -63148212 - L1PA4 LINE L1 -3873 2282 2 954 246 29 26 chr3 154888946 154889404 -63147754 + L1ME LINE L1 1304 1916 -4345 643 199 31 25 chr3 154891187 154891348 -63145810 + MIR SINE MIR 60 221 -41 225 0 0 0 chr3 154891494 154891519 -63145639 + (T)n Simple_repeat Simple_repeat 1 25 0 454 245 28 0 chr3 154891616 154891722 -63145436 + L1MC5 LINE L1 6692 6800 -1161 * 481 185 169 34 chr3 154891713 154891891 -63145267 + L1MC5 LINE L1 7326 7527 -434 319 272 160 12 chr3 154892043 154892212 -63144946 + L1ME3A LINE L1 5970 6163 -7 234 277 108 47 chr3 154892231 154892444 -63144714 - L2 LINE L2 -16 3256 3031 192 320 16 62 chr3 154892628 154892756 -63144402 - MIR SINE MIR -110 152 31 252 86 0 0 chr3 154892882 154892917 -63144241 + (CA)n Simple_repeat Simple_repeat 2 36 0 642 103 0 0 chr3 154893276 154893363 -63143795 + AluJ/FRAM SINE Alu 218 304 -8 352 281 42 0 chr3 154894288 154894384 -63142774 + L2 LINE L2 3203 3302 -11 183 42 0 0 chr3 154894390 154894414 -63142744 + (TGGA)n Simple_repeat Simple_repeat 1 24 0 302 296 92 0 chr3 154895264 154895406 -63141752 - MIR SINE MIR -29 233 79 9389 131 6 1 chr3 154896020 154898273 -63138885 - L1PA11 LINE L1 0 6174 3919 4147 246 38 26 chr3 154898274 154898397 -63138761 - L1PA12 LINE L1 -6425 1156 1036 2399 93 0 0 chr3 154898397 154898698 -63138460 + AluSg SINE Alu 1 301 -9 4147 246 38 26 chr3 154898698 154899709 -63137449 - L1PA12 LINE L1 -6545 1036 9 233 253 160 0 chr3 154900588 154900663 -63136495 - MIR SINE MIR 0 262 176 2389 70 0 10 chr3 154901362 154901660 -63135498 + AluY SINE Alu 1 295 -16 281 308 48 19 chr3 154902220 154902324 -63134834 + MIR SINE MIR 37 143 -65 508 232 204 0 chr3 154903369 154903511 -63133647 - MER5A DNA MER1_type -6 183 13 476 229 107 0 chr3 154903535 154903675 -63133483 + MIR SINE MIR 76 230 -32 2014 200 71 29 chr3 154904410 154904826 -63132332 - MLT1D LTR MaLR 0 505 65 2080 179 3 0 chr3 154904826 154905173 -63131985 + MER7A DNA MER2_type 1 346 0 2014 200 71 29 chr3 154905173 154905232 -63131926 - MLT1D LTR MaLR -440 65 10 197 297 0 27 chr3 154905921 154905995 -63131163 + MIR SINE MIR 50 121 -141 6247 35 3 3 chr3 154905995 154906732 -63130426 - L1PA5 LINE L1 -1 6153 5417 768 213 290 3 chr3 154906873 154907197 -63129961 + L1M4 LINE L1 3729 4145 -2001 270 235 12 24 chr3 154909027 154909112 -63128046 + MIR SINE MIR 41 124 -84 1246 155 98 11 chr3 154909776 154910053 -63127105 + MER33 DNA MER1_type 1 301 -23 565 242 111 20 chr3 154910255 154910453 -63126705 - MIR SINE MIR -18 244 29 292 247 11 22 chr3 154910948 154911037 -63126121 - MIR SINE MIR -118 144 57 272 208 19 0 chr3 154912151 154912204 -63124954 + L2 LINE L2 3224 3277 -36 1020 190 27 0 chr3 154912361 154912545 -63124613 - MER5A DNA MER1_type 0 189 1 2168 144 9 11 chr3 154912962 154913309 -63123849 - MER47A DNA MER2_type -1 365 20 12585 138 39 17 chr3 154913910 154914610 -63122548 - L1PA11 LINE L1 0 7612 6929 1935 89 4 34 chr3 154914610 154914879 -63122279 - AluY SINE Alu -4 307 47 12585 138 39 17 chr3 154914879 154917198 -63119960 - L1PA11 LINE L1 -683 6929 4555 4715 89 36 32 chr3 154917220 154917940 -63119218 - L1PB1 LINE L1 -4 6147 5425 9824 159 70 8 chr3 154917930 154921918 -63115240 - L1PBa LINE L1 -2477 4385 3 8995 218 57 24 chr3 154921929 154923342 -63113816 - L1PA11 LINE L1 -3006 4578 3213 1839 148 43 35 chr3 154923342 154923714 -63113444 - THE1C LTR MaLR 0 375 1 8995 218 57 24 chr3 154923714 154925429 -63111729 - L1PA11 LINE L1 -4371 3213 7 408 283 147 60 chr3 154925937 154926602 -63110556 - L1MEd LINE L1 -5329 790 68 352 305 15 0 chr3 154926652 154926783 -63110375 - MIR SINE MIR -44 218 86 205 342 35 65 chr3 154927169 154927429 -63109729 - L2 LINE L2 -833 2481 2230 11394 204 24 12 chr3 154927573 154931162 -63105996 + L1PA16 LINE L1 2530 6157 -9 180 156 0 0 chr3 154931231 154931263 -63105895 + MIR SINE MIR 158 189 -73 181 200 100 50 chr3 154931570 154931630 -63105528 + L2 LINE L2 3176 3238 -75 186 273 62 102 chr3 154931970 154932098 -63105060 + L2 LINE L2 3142 3264 -8 882 254 35 86 chr3 154933016 154933281 -63103877 + L1ME LINE L1 5484 5739 -398 2513 58 0 3 chr3 154936522 154936817 -63100341 + AluY SINE Alu 1 294 -17 953 301 112 3 chr3 154937550 154937916 -63099242 - MLT1I LTR MaLR -3 406 1 620 242 105 0 chr3 154938597 154938750 -63098408 + MLT1I LTR MaLR 19 187 -222 282 220 33 0 chr3 154938799 154938873 -63098285 - MIR SINE MIR -65 143 79 313 299 75 52 chr3 154939220 154939354 -63097804 + MIR SINE MIR 54 190 -72 259 364 49 0 chr3 154939620 154939782 -63097376 - L2 LINE L2 -419 2895 2726 472 227 45 0 chr3 154942021 154942131 -63095027 - MER103 DNA DNA -51 115 1 420 266 177 0 chr3 154942806 154942998 -63094160 - MIR SINE MIR -35 227 2 234 312 69 69 chr3 154943127 154943300 -63093858 + MIR3 SINE MIR 12 184 -24 237 262 16 16 chr3 154944312 154944373 -63092785 + MIR SINE MIR 50 110 -152 350 328 47 21 chr3 154946095 154946287 -63090871 + MIR SINE MIR 66 262 0 263 324 28 19 chr3 154947016 154947124 -63090034 - MLT1K LTR MaLR -348 240 132 250 235 0 29 chr3 154947232 154947300 -63089858 - L2 LINE L2 -2 3270 3205 190 367 0 0 chr3 154947314 154947393 -63089765 + MIR SINE MIR 168 246 -16 758 150 108 54 chr3 154947571 154947738 -63089420 + MER5B DNA MER1_type 1 176 -2 1050 214 133 53 chr3 154948087 154948485 -63088673 - LTR41 LTR ERVL -1 772 343 193 211 197 0 chr3 154948576 154948647 -63088511 - MIR SINE MIR -132 130 46 2206 124 0 0 chr3 154950338 154950637 -63086521 + AluSg SINE Alu 12 310 0 240 257 0 57 chr3 154951434 154951504 -63085654 - MIR SINE MIR -7 255 190 266 320 59 54 chr3 154951841 154952063 -63085095 - L2 LINE L2 -453 2861 2639 181 241 279 0 chr3 154952687 154952766 -63084392 - MIR SINE MIR -76 186 86 265 315 59 54 chr3 154953254 154953476 -63083682 - L2 LINE L2 -453 2861 2639 21 0 0 0 chr3 154953811 154953832 -63083326 + AT_rich Low_complexity Low_complexity 1 21 0 314 252 89 8 chr3 154954806 154954929 -63082229 + MIR SINE MIR 74 206 -56 215 137 55 0 chr3 154954930 154955003 -63082155 + (TA)n Simple_repeat Simple_repeat 2 78 0 22 0 0 0 chr3 154955539 154955561 -63081597 + AT_rich Low_complexity Low_complexity 1 22 0 240 269 65 21 chr3 154955876 154955969 -63081189 - L2 LINE L2 -50 3222 3126 248 305 186 0 chr3 154956454 154956621 -63080537 - MIR SINE MIR -45 217 20 254 233 47 81 chr3 154956685 154956771 -63080387 - MLT1I LTR MaLR -13 396 314 303 293 50 43 chr3 154956801 154957036 -63080122 - MLT1J2 LTR MaLR -177 232 1 1469 289 93 9 chr3 154957535 154958075 -63079083 + L1MC4a LINE L1 5371 5955 -1853 1093 264 30 13 chr3 154958114 154958413 -63078745 - MLT1I LTR MaLR -7 402 99 202 273 0 18 chr3 154960130 154960185 -63076973 + L2 LINE L2 3218 3271 -1 455 325 65 13 chr3 154961009 154961240 -63075918 - MIR SINE MIR -6 256 14 378 249 100 50 chr3 154962235 154962476 -63074682 + L1ME4a LINE L1 5868 6120 -1 935 256 42 16 chr3 154963804 154964112 -63073046 + Charlie7 DNA MER1_type 412 727 -1885 29 0 0 0 chr3 154964118 154964147 -63073011 + AT_rich Low_complexity Low_complexity 1 29 0 25 75 0 0 chr3 154964159 154964212 -63072946 + AT_rich Low_complexity Low_complexity 1 53 0 27 29 0 0 chr3 154964284 154964318 -63072840 + AT_rich Low_complexity Low_complexity 1 34 0 198 224 52 0 chr3 154964382 154964440 -63072718 + MIR SINE MIR 129 189 -73 290 307 94 2 chr3 154964957 154965086 -63072072 - MIR SINE MIR -69 139 2 319 300 31 0 chr3 154966873 154967003 -63070155 - MIR SINE MIR -65 197 64 406 281 73 0 chr3 154967747 154967911 -63069247 - MIR SINE MIR -12 250 75 195 69 0 0 chr3 154969943 154969972 -63067186 + (TC)n Simple_repeat Simple_repeat 2 30 0 243 189 40 14 chr3 154970209 154970283 -63066875 + (CAA)n Simple_repeat Simple_repeat 3 78 0 216 291 15 67 chr3 154971101 154971235 -63065923 - MIR SINE MIR -50 212 86 2136 123 3 13 chr3 154972809 154973119 -63064039 - AluSx SINE Alu -5 307 1 1073 205 58 81 chr3 154973273 154973354 -63063804 - MER58B DNA MER1_type -2079 341 260 1926 162 27 0 chr3 154973354 154973688 -63063470 - MER2 DNA MER2_type -1 343 1 1073 205 58 81 chr3 154973688 154973952 -63063206 - MER58B DNA MER1_type -2160 260 4 258 320 29 0 chr3 154975101 154975204 -63061954 - L2 LINE L2 -8 3264 3159 738 138 145 7 chr3 154975752 154975904 -63061254 + MER5A DNA MER1_type 17 189 0 182 259 0 35 chr3 154977209 154977267 -63059891 + L2 LINE L2 3213 3268 -4 240 167 0 0 chr3 154978934 154978982 -63058176 + L1MC4 LINE L1 6655 6702 -1340 237 289 0 26 chr3 154979096 154979172 -63057986 + L2 LINE L2 3226 3299 -14 2012 117 0 46 chr3 154981430 154981754 -63055404 - AluSx SINE Alu -3 309 1 803 319 18 33 chr3 154983087 154983423 -63053735 - MER102b DNA MER1_type -9 332 2 706 194 136 37 chr3 154983601 154983792 -63053366 + MER63A DNA MER1_type 1 210 0 265 177 71 9 chr3 154984744 154984857 -63052301 + (TA)n Simple_repeat Simple_repeat 2 121 0 234 219 37 43 chr3 154984873 154985037 -63052121 + (TTATA)n Simple_repeat Simple_repeat 2 164 0 434 267 67 0 chr3 154986467 154986617 -63050541 - MIR SINE MIR -14 248 89 235 240 0 0 chr3 154987204 154987254 -63049904 + (CATATA)n Simple_repeat Simple_repeat 4 53 0 309 355 47 0 chr3 154987289 154987461 -63049697 + MIR SINE MIR 70 249 -13 225 196 0 18 chr3 154987521 154987577 -63049581 + (TTCA)n Simple_repeat Simple_repeat 1 55 0 477 262 137 0 chr3 154987676 154987859 -63049299 - MIR SINE MIR -7 255 48 249 306 96 38 chr3 154988345 154988502 -63048656 - L2 LINE L2 -31 3282 3117 382 288 25 0 chr3 154988625 154988743 -63048415 - LTR67 LTR ERVL 0 557 437 182 384 40 0 chr3 154988996 154989095 -63048063 + L2 LINE L2 2715 2817 -497 402 196 0 0 chr3 154990285 154990377 -63046781 + GA-rich Low_complexity Low_complexity 2 93 0 524 261 82 31 chr3 154990828 154991085 -63046073 + L1MC/D LINE L1 5308 5577 -782 262 135 0 0 chr3 154991253 154991290 -63045868 + MLT1J1 LTR MaLR 243 279 -167 426 244 96 122 chr3 154991835 154992221 -63044937 + MLT1J LTR MaLR 112 487 -24 3128 128 65 36 chr3 154992531 154992731 -63044427 + L1PA13 LINE L1 5574 5767 -396 2007 97 0 0 chr3 154992731 154992989 -63044169 + AluSq SINE Alu 56 313 0 3128 128 65 36 chr3 154992989 154993047 -63044111 + L1PA13 LINE L1 5767 5822 -341 2136 116 0 17 chr3 154993047 154993348 -63043810 + AluSq SINE Alu 1 296 -17 3128 128 65 36 chr3 154993348 154993643 -63043515 + L1PA13 LINE L1 5822 6144 -19 22 56 0 0 chr3 154993644 154993680 -63043478 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr3 154993824 154993855 -63043303 + AT_rich Low_complexity Low_complexity 1 31 0 272 333 62 23 chr3 154994770 154994947 -63042211 + MLT1I LTR MaLR 57 240 -169 964 100 0 0 chr3 154994952 154995072 -63042086 + AluSq/x SINE Alu 9 128 -185 339 327 27 0 chr3 154995110 154995220 -63041938 + MLT1I LTR MaLR 248 360 -49 331 305 84 46 chr3 154996341 154996580 -63040578 + L2 LINE L2 2836 3083 -189 2742 262 157 38 chr3 154996701 154997939 -63039219 + MER69 DNA AcHobo 1 1385 -1141 1079 215 145 15 chr3 154997945 154998345 -63038813 + MER69 DNA AcHobo 2019 2470 -56 3226 145 53 7 chr3 154998711 154999385 -63037773 - L1MC1 LINE L1 -10 6323 5587 255 320 40 48 chr3 155000246 155000371 -63036787 - L2 LINE L2 -23 3249 3126 332 254 0 53 chr3 155000607 155000721 -63036437 - MIR SINE MIR -75 187 80 734 243 108 5 chr3 155001612 155001797 -63035361 - MER58A DNA MER1_type -6 218 15 867 212 77 106 chr3 155002358 155002736 -63034422 - LTR37B LTR ERV1 -98 370 4 394 238 95 30 chr3 155003247 155003415 -63033743 + MLT1L LTR MaLR 437 615 0 295 78 39 0 chr3 155003415 155003466 -63033692 + (TG)n Simple_repeat Simple_repeat 1 53 0 714 224 40 36 chr3 155003952 155004175 -63032983 + MER69 DNA AcHobo 2050 2273 -253 651 240 57 117 chr3 155004999 155005349 -63031809 + MER102a DNA MER1_type 1 329 -1 283 341 29 7 chr3 155005452 155005590 -63031568 + MIR SINE MIR 74 214 -48 222 298 0 36 chr3 155005753 155005837 -63031321 - MIR SINE MIR -71 191 111 196 417 42 21 chr3 155005881 155006025 -63031133 + L2 LINE L2 3102 3248 -24 3732 223 25 15 chr3 155006494 155007454 -63029704 - L1ME1 LINE L1 -6 6160 5189 781 178 136 0 chr3 155007451 155007620 -63029538 - L1PA15 LINE L1 0 6165 5974 * 892 234 25 8 chr3 155007612 155007856 -63029302 - L1ME1 LINE L1 -950 5196 4949 2875 260 16 26 chr3 155008216 155008948 -63028210 + L1PA13 LINE L1 1 725 -6062 11725 229 18 30 chr3 155008985 155013181 -63023977 + L1PA13 LINE L1 1290 5459 -1338 220 210 25 0 chr3 155013188 155013269 -63023889 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 827 320 108 25 chr3 155016649 155017177 -63019981 + MLT1K LTR MaLR 2 573 -15 349 353 23 8 chr3 155018455 155018588 -63018570 + MIR SINE MIR 20 154 -108 183 339 51 25 chr3 155018593 155018711 -63018447 + L2 LINE L2 2926 3046 -226 182 219 0 49 chr3 155018855 155018896 -63018262 + L2 LINE L2 3223 3261 -52 332 400 17 7 chr3 155019124 155019414 -63017744 + L1 LINE L1 2326 2618 -3528 424 324 112 41 chr3 155019469 155020123 -63017035 + L1 LINE L1 2752 3451 -2695 928 141 60 5 chr3 155020177 155020361 -63016797 + L1PB1 LINE L1 1 194 -6669 * 1128 99 0 25 chr3 155020349 155020592 -63016566 + L1PB1 LINE L1 993 1378 -5485 * 4006 82 21 20 chr3 155020590 155021246 -63015912 + L1PB1 LINE L1 1619 2275 -4588 5946 121 19 10 chr3 155021291 155022696 -63014462 + L1PB1 LINE L1 5456 6867 0 435 281 8 8 chr3 155023175 155023296 -63013862 - MLT1G1 LTR MaLR -474 121 1 1197 282 53 89 chr3 155023724 155024628 -63012530 + L1ME LINE L1 12 947 -5314 315 0 0 0 chr3 155024628 155024663 -63012495 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2121 110 0 37 chr3 155024667 155024967 -63012191 - AluSc SINE Alu -20 289 1 1197 282 53 89 chr3 155024967 155025871 -63011287 + L1ME LINE L1 950 1844 -4417 * 28212 53 9 0 chr3 155025869 155029637 -63007521 + L1P LINE L1 578 4377 -1769 1302 319 83 35 chr3 155029757 155029896 -63007262 + HERVL LTR ERVL 1448 1579 -4075 1961 152 3 0 chr3 155029896 155030192 -63006966 - AluSq SINE Alu -16 297 1 1302 319 83 35 chr3 155030192 155030352 -63006806 + HERVL LTR ERVL 1579 1730 -3924 2281 93 3 0 chr3 155030352 155030653 -63006505 + AluY SINE Alu 1 302 -9 1302 319 83 35 chr3 155030653 155031253 -63005905 + HERVL LTR ERVL 1730 2391 -3263 2305 320 87 27 chr3 155031284 155032738 -63004420 + HERVL LTR ERVL 2498 4038 -1726 2447 278 85 11 chr3 155032748 155033585 -63003573 + HERVL LTR ERVL 4175 5073 -691 249 319 35 57 chr3 155034105 155034246 -63002912 + L3 LINE CR1 1374 1511 -66 637 239 33 28 chr3 155034250 155034430 -63002728 - MIR SINE MIR -66 196 16 259 316 145 13 chr3 155034920 155035072 -63002086 + MIR3 SINE MIR 33 204 -4 405 235 20 0 chr3 155035766 155035864 -63001294 + L2 LINE L2 1530 1629 -1685 900 277 105 10 chr3 155035865 155036307 -63000851 + L2 LINE L2 2596 3088 -225 1495 172 109 23 chr3 155036339 155036688 -63000470 + MLT1C LTR MaLR 28 406 -61 25 51 0 0 chr3 155036704 155036743 -63000415 + AT_rich Low_complexity Low_complexity 1 39 0 371 274 53 0 chr3 155036954 155037049 -63000109 - MIR SINE MIR -69 193 94 344 243 68 45 chr3 155037770 155037947 -62999211 - L1MC5 LINE L1 -85 7876 7696 512 173 10 0 chr3 155038049 155038195 -62998963 + HSAT4 Satellite centromeric 1 147 -20 1483 208 62 33 chr3 155038415 155038868 -62998290 - L1MC5 LINE L1 -497 7464 6999 1095 220 112 12 chr3 155038868 155039127 -62998031 + AluJb SINE Alu 1 285 -17 439 279 32 34 chr3 155039697 155039996 -62997162 - LTR16A1 LTR ERVL -110 340 1 493 293 68 27 chr3 155040057 155040554 -62996604 - L1MC5 LINE L1 -1011 6803 6283 1685 256 73 18 chr3 155040798 155041403 -62995755 - L1MC5 LINE L1 -1892 5916 5279 361 306 54 27 chr3 155041587 155041956 -62995202 - L1MC5 LINE L1 -1008 5138 4760 21 57 0 0 chr3 155041973 155042008 -62995150 + AT_rich Low_complexity Low_complexity 1 35 0 272 261 112 60 chr3 155042138 155042869 -62994289 - L1MC5 LINE L1 -2680 3466 2698 8797 176 14 4 chr3 155042870 155045309 -62991849 - L1PA14 LINE L1 0 7599 5145 7633 23 3 3 chr3 155045311 155046252 -62990906 + L1PA3 LINE L1 5212 6152 -3 10185 178 35 15 chr3 155046261 155046759 -62990399 - L1PA14 LINE L1 -2433 5151 4664 6905 64 0 2 chr3 155046759 155048073 -62989085 - L1PA7 LINE L1 -2 6152 4835 10185 178 35 15 chr3 155048073 155051142 -62986016 - L1PA14 LINE L1 -2920 4664 1512 1097 281 70 20 chr3 155051657 155052002 -62985156 + MLT1H1 LTR MaLR 7 368 -187 1507 208 55 39 chr3 155052003 155052235 -62984923 + L1M4 LINE L1 809 1036 -5506 2394 145 47 2 chr3 155052235 155052643 -62984515 - MSTA LTR MaLR -2 426 1 1507 208 55 39 chr3 155052643 155052900 -62984258 + L1M4 LINE L1 1036 1306 -5236 2118 107 10 7 chr3 155052953 155053242 -62983916 + AluSc SINE Alu 2 291 -18 784 219 32 62 chr3 155053242 155053580 -62983578 + L1M4 LINE L1 1494 1821 -4825 4548 164 14 10 chr3 155053581 155054384 -62982774 + L1 LINE L1 8 813 -6752 5494 89 97 102 chr3 155054384 155055920 -62981238 + pTR5 LTR ERV1 743 2426 -12 14281 144 32 9 chr3 155055920 155058045 -62979113 + L1 LINE L1 797 2989 -4576 2245 96 0 0 chr3 155058045 155058369 -62978789 + AluSc SINE Alu 1 324 0 14281 144 32 9 chr3 155058369 155058726 -62978432 + L1 LINE L1 2989 3336 -4229 22001 179 22 19 chr3 155058734 155059995 -62977163 + L1PA11 LINE L1 4 1260 -6352 188 67 33 0 chr3 155059995 155060025 -62977133 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 22001 179 22 19 chr3 155060025 155065240 -62971918 + L1PA11 LINE L1 1260 7591 -21 1913 140 16 15 chr3 155065249 155065821 -62971337 + L1 LINE L1 3333 3905 -3660 * 6420 185 17 4 chr3 155065818 155067169 -62969989 + L1 LINE L1 5383 6751 -814 583 284 11 0 chr3 155067175 155067365 -62969793 + L1PB1 LINE L1 6 197 -6666 * 13490 191 27 16 chr3 155067363 155068763 -62968395 + L1PB1 LINE L1 1393 2777 -4090 2422 75 0 0 chr3 155068763 155069055 -62968103 + AluY SINE Alu 1 292 -19 13490 191 27 16 chr3 155069055 155072650 -62964508 + L1PB1 LINE L1 2777 6512 -355 405 0 0 0 chr3 155072650 155072695 -62964463 + (TA)n Simple_repeat Simple_repeat 2 46 0 13490 191 27 16 chr3 155072695 155073055 -62964103 + L1PB1 LINE L1 6512 6867 0 23 33 0 0 chr3 155073055 155073085 -62964073 + AT_rich Low_complexity Low_complexity 1 30 0 6079 102 12 23 chr3 155073085 155074096 -62963062 + L1MA3 LINE L1 5298 6303 -2 834 239 26 4 chr3 155074117 155074343 -62962815 + L1MB7 LINE L1 1551 1781 -4603 757 195 32 0 chr3 155074341 155074526 -62962632 + L1MB7 LINE L1 3788 3978 -2404 * 7515 90 28 6 chr3 155074528 155074696 -62962462 + L1PA8 LINE L1 4248 4411 -1761 2726 19 0 28 chr3 155074696 155075015 -62962143 + AluYa5 SINE Alu 1 310 -1 7515 90 28 6 chr3 155075015 155076760 -62960398 + L1PA8 LINE L1 4411 6172 0 515 111 0 0 chr3 155076765 155076846 -62960312 - L1PA3 LINE L1 0 6155 6075 679 58 0 48 chr3 155076947 155077051 -62960107 + L1PA8 LINE L1 6074 6172 0 6207 38 0 0 chr3 155077056 155077795 -62959363 - L1PA4 LINE L1 0 6155 5417 4829 192 79 22 chr3 155077936 155080232 -62956926 + L1MB7 LINE L1 3965 6403 -17 197 259 165 24 chr3 155082170 155082255 -62954903 + MIR SINE MIR 45 141 -67 373 236 56 0 chr3 155082347 155082436 -62954722 - MIR SINE MIR -130 132 39 639 201 6 92 chr3 155083230 155083404 -62953754 - MER5B DNA MER1_type 0 178 20 190 301 48 0 chr3 155083393 155083476 -62953682 - L2 LINE L2 -629 2685 2599 * 516 291 83 21 chr3 155084730 155084971 -62952187 - MIR SINE MIR -1 261 6 962 216 72 48 chr3 155085054 155085523 -62951635 - MER90 LTR ERV1 0 614 82 628 279 73 16 chr3 155085546 155085793 -62951365 - MIR SINE MIR 0 262 2 480 282 92 0 chr3 155086769 155086911 -62950247 + MIR SINE MIR 98 252 -10 188 273 30 15 chr3 155087689 155087755 -62949403 - L2 LINE L2 -2 3311 3245 240 327 58 0 chr3 155088568 155088672 -62948486 - MER5A DNA MER1_type -79 110 1 453 208 167 17 chr3 155088699 155088819 -62948339 - MER5B DNA MER1_type -40 138 1 626 144 15 0 chr3 155088849 155088956 -62948202 + MER5A DNA MER1_type 4 112 -77 274 241 234 36 chr3 155088880 155089017 -62948141 - MER5A DNA MER1_type -23 166 3 * 318 328 0 17 chr3 155089029 155089145 -62948013 + MER5B DNA MER1_type 63 176 -2 341 308 145 37 chr3 155089151 155089365 -62947793 + MIR SINE MIR 13 249 -13 315 222 28 14 chr3 155090392 155090464 -62946694 + L2 LINE L2 3200 3272 0 434 248 263 0 chr3 155092854 155092991 -62944167 - MER5A DNA MER1_type -5 184 12 436 271 21 7 chr3 155093697 155093841 -62943317 + L1ME LINE L1 5627 5772 -349 420 20 0 0 chr3 155093952 155094001 -62943157 + (TA)n Simple_repeat Simple_repeat 2 50 0 288 284 74 12 chr3 155094822 155094903 -62942255 - L2 LINE L2 -38 3234 3149 540 115 86 72 chr3 155094988 155095127 -62942031 - MER53 DNA DNA 0 189 49 290 214 12 0 chr3 155095522 155095606 -62941552 + CT-rich Low_complexity Low_complexity 2 86 0 507 33 0 0 chr3 155095924 155095985 -62941173 + (CA)n Simple_repeat Simple_repeat 2 62 0 210 37 0 0 chr3 155095984 155096011 -62941147 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 233 362 71 31 chr3 155096399 155096526 -62940632 + L2 LINE L2 3137 3268 -4 218 280 32 0 chr3 155097314 155097416 -62939742 - MIR SINE MIR -58 204 97 189 196 0 65 chr3 155097417 155097463 -62939695 - MIR SINE MIR -65 143 101 200 321 80 18 chr3 155097697 155097809 -62939349 + L2 LINE L2 3186 3304 -9 1778 191 79 33 chr3 155098016 155098384 -62938774 - MLT1D LTR MaLR 0 505 108 1914 157 0 10 chr3 155098384 155098684 -62938474 + AluSx SINE Alu 1 297 -15 1778 191 79 33 chr3 155098684 155098798 -62938360 - MLT1D LTR MaLR -397 108 1 326 308 95 86 chr3 155099680 155099957 -62937201 - L1MB8 LINE L1 -249 5929 5647 1952 156 44 47 chr3 155099957 155100342 -62936816 - MLT1B LTR MaLR -3 387 4 326 308 95 86 chr3 155100342 155100379 -62936779 - L1MB8 LINE L1 -531 5647 5612 525 271 59 82 chr3 155100408 155101082 -62936076 - L1MB8 LINE L1 -618 5548 4860 200 86 29 0 chr3 155101082 155101117 -62936041 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2424 42 0 0 chr3 155101119 155101404 -62935754 - AluY SINE Alu -26 285 1 525 271 59 82 chr3 155101404 155101743 -62935415 - L1MB8 LINE L1 -1307 4859 4541 860 187 59 5 chr3 155101837 155102040 -62935118 + L1MA9 LINE L1 6057 6270 -42 1102 271 134 25 chr3 155102224 155102933 -62934225 - L1MB8 LINE L1 -1923 4223 3438 299 288 121 0 chr3 155104098 155104230 -62932928 + MIR SINE MIR 57 204 -58 332 304 76 13 chr3 155104819 155104977 -62932181 - L3 LINE CR1 -132 1445 1278 191 262 115 0 chr3 155105388 155105449 -62931709 + L2 LINE L2 3169 3236 -36 240 35 0 0 chr3 155106324 155106353 -62930805 + (TG)n Simple_repeat Simple_repeat 2 30 0 500 347 117 11 chr3 155106659 155107242 -62929916 - L2 LINE L2 -62 3251 2597 895 199 256 27 chr3 155107482 155108042 -62929116 - LTR50 LTR ERVL -17 778 1 216 309 59 0 chr3 155108044 155108112 -62929046 - L2 LINE L2 -1029 2285 2214 1875 153 134 24 chr3 155108223 155108603 -62928555 - MSTB LTR MaLR -2 424 3 9458 175 13 11 chr3 155108614 155110261 -62926897 - MSTB-int LTR MaLR 0 1651 2 2079 180 45 38 chr3 155110262 155110685 -62926473 - MSTB LTR MaLR 0 426 1 466 294 25 19 chr3 155110761 155110921 -62926237 + MER5B DNA MER1_type 1 161 -17 1865 179 29 61 chr3 155111200 155111609 -62925549 + MSTD LTR MaLR 1 396 0 273 151 0 0 chr3 155111999 155112052 -62925106 + (CA)n Simple_repeat Simple_repeat 2 54 0 207 69 0 0 chr3 155113181 155113210 -62923948 + (TAA)n Simple_repeat Simple_repeat 1 29 0 825 178 6 29 chr3 155113223 155113397 -62923761 - MIR SINE MIR -28 234 65 227 275 14 14 chr3 155113722 155113791 -62923367 - L2 LINE L2 -20 3252 3184 28 0 0 0 chr3 155113960 155113988 -62923170 + AT_rich Low_complexity Low_complexity 1 28 0 202 317 54 83 chr3 155114414 155114619 -62922539 + MIR SINE MIR 48 246 -16 1981 194 109 2 chr3 155115660 155116073 -62921085 + MSTB2 LTR MaLR 1 457 0 2208 137 0 0 chr3 155116870 155117170 -62919988 + AluSx SINE Alu 1 300 -12 198 0 0 0 chr3 155117247 155117269 -62919889 + (CTG)n Simple_repeat Simple_repeat 3 24 0 532 29 0 0 chr3 155117321 155117389 -62919769 + L1PA14 LINE L1 6093 6160 -1 295 281 64 41 chr3 155117697 155117868 -62919290 + L1ME LINE L1 5619 5793 -328 1981 164 0 0 chr3 155117881 155118179 -62918979 + AluJb SINE Alu 1 298 -14 3260 119 61 99 chr3 155118301 155118937 -62918221 + LTR9 LTR ERV1 1 612 0 348 250 0 22 chr3 155119029 155119121 -62918037 + L1MC4 LINE L1 6614 6703 -1339 590 207 6 0 chr3 155119126 155119290 -62917868 + (TA)n Simple_repeat Simple_repeat 1 165 0 231 167 50 0 chr3 155119300 155119360 -62917798 - LTR66 LTR ERVL -171 439 377 276 240 27 13 chr3 155119748 155119823 -62917335 + MLT1I LTR MaLR 70 145 -264 293 217 37 6 chr3 155120799 155120960 -62916198 + (TA)n Simple_repeat Simple_repeat 1 166 0 266 286 54 36 chr3 155121328 155121440 -62915718 + MIR SINE MIR 21 134 -74 210 248 6 119 chr3 155121525 155121620 -62915538 + MIR SINE MIR 47 115 -137 2262 98 7 0 chr3 155121620 155121906 -62915252 - AluSc SINE Alu -21 288 1 210 248 6 119 chr3 155121906 155121964 -62915194 + MIR SINE MIR 115 178 -74 495 231 48 20 chr3 155121977 155122124 -62915034 - MLT1G1 LTR MaLR -7 548 398 182 194 32 11 chr3 155122213 155122306 -62914852 + CT-rich Low_complexity Low_complexity 2 96 0 798 210 64 38 chr3 155122343 155122638 -62914520 - MLT1G1 LTR MaLR -322 268 1 631 285 32 14 chr3 155123070 155123291 -62913867 - MLT1I LTR MaLR -184 225 1 737 263 48 0 chr3 155123701 155123887 -62913271 + MIR SINE MIR 35 229 -33 2119 130 0 0 chr3 155124312 155124604 -62912554 - AluSg SINE Alu -18 292 1 219 69 0 0 chr3 155125021 155125050 -62912108 + (CA)n Simple_repeat Simple_repeat 2 30 0 227 302 0 0 chr3 155125220 155125273 -62911885 + MLT1K LTR MaLR 142 194 -394 281 229 45 123 chr3 155125411 155125590 -62911568 + MLT1K LTR MaLR 312 476 -112 3036 174 30 16 chr3 155125592 155126149 -62911009 + MLT1F1 LTR MaLR 3 567 0 226 338 30 99 chr3 155126246 155126509 -62910649 + L2 LINE L2 2966 3210 -62 235 231 19 39 chr3 155126579 155126631 -62910527 - MER81 DNA DNA -58 56 6 1409 223 48 39 chr3 155126642 155127055 -62910103 + LTR16A1 LTR ERVL 41 457 0 201 74 0 0 chr3 155127067 155127094 -62910064 + (TGAG)n Simple_repeat Simple_repeat 1 27 0 278 331 39 8 chr3 155127104 155127234 -62909924 + MIR SINE MIR 98 231 -31 326 279 39 45 chr3 155128055 155128263 -62908895 + MIR SINE MIR 5 211 -51 1051 222 152 64 chr3 155128566 155129052 -62908106 - MLT1F LTR MaLR -13 529 1 392 315 49 0 chr3 155129088 155129272 -62907886 - MIR SINE MIR -21 241 49 488 297 81 0 chr3 155131132 155131317 -62905841 + MIR SINE MIR 57 256 -6 334 201 220 8 chr3 155131465 155131584 -62905574 - MER63 DNA MER1_type -273 788 6 2533 62 3 0 chr3 155131847 155132155 -62905003 + AluY SINE Alu 3 311 0 28 29 0 0 chr3 155132262 155132297 -62904861 + AT_rich Low_complexity Low_complexity 1 35 0 590 229 0 0 chr3 155132389 155132507 -62904651 - MIR SINE MIR -36 226 109 289 261 204 42 chr3 155133788 155133930 -62903228 - L1MC/D LINE L1 -2075 5733 5569 1266 98 0 0 chr3 155133947 155134111 -62903047 + AluSg/x SINE Alu 132 295 -17 276 234 39 0 chr3 155134151 155134228 -62902930 - L1MC/D LINE L1 -1558 4588 4509 539 287 35 10 chr3 155134502 155134704 -62902454 - MIR SINE MIR -4 258 52 438 314 34 25 chr3 155135275 155135511 -62901647 + LTR16C LTR ERVL 237 474 -17 279 173 0 0 chr3 155135662 155135714 -62901444 + CT-rich Low_complexity Low_complexity 3 54 0 261 314 119 8 chr3 155136051 155136169 -62900989 + MIR SINE MIR 16 146 -62 240 297 25 2 chr3 155136361 155136474 -62900684 - MIR SINE MIR -66 142 40 906 176 29 12 chr3 155136669 155136839 -62900319 - MLT1A1 LTR MaLR -1 364 192 2022 189 22 75 chr3 155136939 155137472 -62899686 - MLT1D LTR MaLR 0 505 1 1886 129 53 44 chr3 155137737 155138079 -62899079 + THE1C LTR MaLR 31 375 0 1922 128 4 0 chr3 155138340 155138614 -62898544 - AluY SINE Alu -14 297 23 477 277 87 5 chr3 155139267 155139451 -62897707 + MIR SINE MIR 64 262 0 191 257 100 0 chr3 155140482 155140552 -62896606 - L2 LINE L2 -50 3222 3146 210 319 14 0 chr3 155140765 155140834 -62896324 - L2 LINE L2 0 3313 3244 13320 67 9 9 chr3 155142599 155144394 -62892764 + L1P LINE L1 2583 4377 -1769 522 322 4 50 chr3 155144526 155144653 -62892505 + ERVL LTR ERVL 1499 1611 -4153 1960 152 3 0 chr3 155144653 155144949 -62892209 - AluSq SINE Alu -16 297 1 522 322 4 50 chr3 155144949 155145063 -62892095 + ERVL LTR ERVL 1611 1729 -4035 2090 97 7 4 chr3 155145109 155145432 -62891726 + AluSc SINE Alu 1 324 0 1960 106 115 6 chr3 155145432 155145789 -62891369 + L1M1 LINE L1 2941 3336 -4229 13830 192 20 18 chr3 155145797 155147058 -62890100 + L1PA12 LINE L1 4 1261 -6323 188 67 33 0 chr3 155147058 155147088 -62890070 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 13830 192 20 18 chr3 155147088 155150467 -62886691 + L1PA12 LINE L1 1261 5743 -1841 1327 147 0 0 chr3 155150574 155150772 -62886386 + L1PB1 LINE L1 5954 6151 0 6583 104 14 25 chr3 155150776 155151815 -62885343 + L1MA3 LINE L1 5276 6305 0 898 232 25 21 chr3 155151832 155152073 -62885085 + L1M4c LINE L1 1551 1792 -4592 838 198 32 0 chr3 155152056 155152243 -62884915 + L1M4c LINE L1 3788 3980 -2402 * 8146 88 10 0 chr3 155152243 155152411 -62884747 + L1PA7 LINE L1 4248 4413 -1741 2441 57 0 66 chr3 155152411 155152744 -62884414 + AluY SINE Alu 1 311 0 8146 88 10 0 chr3 155152744 155154480 -62882678 + L1PA7 LINE L1 4413 6152 -2 1894 229 77 10 chr3 155154481 155154978 -62882180 + L1P LINE L1 3184 3713 -2433 4323 95 10 27 chr3 155154987 155155659 -62881499 - L1PA3 LINE L1 -3 6152 5492 2087 164 13 29 chr3 155156226 155157105 -62880053 - L1M1 LINE L1 -1886 5679 3333 9141 149 18 9 chr3 155157114 155159585 -62877573 - L1PA11 LINE L1 -21 6153 3665 371 236 56 0 chr3 155160216 155160305 -62876853 + MIR SINE MIR 39 132 -130 202 259 165 24 chr3 155160397 155160482 -62876676 - MIR SINE MIR -67 141 45 248 299 13 96 chr3 155161744 155161901 -62875257 + MER21A LTR ERV1 639 782 -149 467 294 130 0 chr3 155162144 155162321 -62874837 - MIR SINE MIR -5 257 58 1526 254 11 11 chr3 155162573 155162928 -62874230 - MER4D LTR ERV1 0 903 549 1853 126 15 0 chr3 155162985 155163256 -62873902 - MER49 LTR ERV1 -640 283 9 8067 175 21 1 chr3 155163644 155164986 -62872172 - L1M1 LINE L1 -5098 2467 1099 639 170 45 0 chr3 155164983 155165095 -62872063 - L1M1 LINE L1 -7432 133 17 * 954 202 26 0 chr3 155165095 155165323 -62871835 - MER33 DNA MER1_type -30 294 61 203 333 133 7 chr3 155165470 155165605 -62871553 + L3 LINE CR1 1425 1576 -1 415 248 10 10 chr3 155166405 155166506 -62870652 - LTR16B LTR ERVL 0 464 364 838 176 28 28 chr3 155166514 155166696 -62870462 + MER53 DNA DNA 2 183 -6 1074 158 46 15 chr3 155166776 155166972 -62870186 + MLT1D LTR MaLR 2 203 -302 22 35 0 0 chr3 155167296 155167325 -62869833 + AT_rich Low_complexity Low_complexity 1 29 0 304 310 49 35 chr3 155168178 155168320 -62868838 + MLT1J LTR MaLR 35 178 -333 411 281 103 35 chr3 155168479 155168682 -62868476 - L2 LINE L2 -617 2697 2481 1856 138 7 10 chr3 155168950 155169255 -62867903 + AluSq SINE Alu 10 313 0 652 114 9 9 chr3 155169257 155169371 -62867787 + (GGAA)n Simple_repeat Simple_repeat 4 117 0 278 363 0 9 chr3 155169502 155169615 -62867543 + L1MEd LINE L1 524 635 -5737 445 303 27 65 chr3 155170859 155171196 -62865962 - L1MCc LINE L1 -5956 467 144 347 224 0 40 chr3 155171201 155171277 -62865881 - Tigger5 DNA MER2_type 0 2323 2251 279 270 0 14 chr3 155171292 155171366 -62865792 - Tigger5 DNA MER2_type 0 2323 2251 230 224 0 20 chr3 155171334 155171383 -62865775 - Tigger5 DNA MER2_type -2268 55 8 * 277 247 32 0 chr3 155171393 155171486 -62865672 - L1MCc LINE L1 -6286 137 42 362 259 57 41 chr3 155171548 155171741 -62865417 - L1ME3 LINE L1 -174 5988 5787 706 268 125 24 chr3 155174001 155174296 -62862862 + L1MC4a LINE L1 6558 6882 -926 277 174 22 87 chr3 155174306 155174341 -62862817 + L1MEd LINE L1 1049 1085 -5299 2165 154 0 0 chr3 155174341 155174653 -62862505 + AluSx SINE Alu 1 312 0 277 174 22 87 chr3 155174653 155174709 -62862449 + L1MEd LINE L1 1085 1134 -5250 3941 199 38 15 chr3 155174818 155175763 -62861395 - L1 LINE L1 -1030 5116 4150 2031 145 0 0 chr3 155176593 155176890 -62860268 - AluJb SINE Alu -15 297 1 221 342 19 71 chr3 155176893 155177048 -62860110 + L2 LINE L2 2925 3071 -201 703 180 0 8 chr3 155177559 155177687 -62859471 - L1M2 LINE L1 -571 5741 5615 1097 153 88 0 chr3 155177687 155177898 -62859260 + L1MA7 LINE L1 6051 6285 -6 210 221 35 81 chr3 155177916 155178002 -62859156 - MIR SINE MIR -156 106 25 186 191 0 0 chr3 155178816 155178858 -62858300 + T-rich Low_complexity Low_complexity 1 42 0 221 314 29 0 chr3 155179176 155179246 -62857912 + MIR SINE MIR 36 107 -101 511 296 60 41 chr3 155179482 155179951 -62857207 + L1ME LINE L1 5144 5623 -547 3836 163 64 19 chr3 155180134 155181563 -62855595 + L1M1 LINE L1 2484 4164 -3401 668 344 19 5 chr3 155182417 155182634 -62854524 - HERV16 LTR ERVL -1901 3095 2907 289 307 105 0 chr3 155183255 155183408 -62853750 + MLT1I LTR MaLR 19 187 -222 237 200 44 0 chr3 155183480 155183525 -62853633 - MIR SINE MIR -76 132 86 354 322 29 46 chr3 155183838 155184012 -62853146 + MIR SINE MIR 20 190 -72 349 250 197 23 chr3 155185258 155185390 -62851768 - MIR SINE MIR -21 241 87 1165 119 64 50 chr3 155185754 155185972 -62851186 - AluJo SINE Alu -5 307 87 2065 115 7 0 chr3 155186160 155186448 -62850710 - AluSx SINE Alu -22 290 1 749 187 111 42 chr3 155188275 155188512 -62848646 + MER33 DNA MER1_type 1 241 -83 2243 107 3 16 chr3 155188512 155188829 -62848329 - AluSq SINE Alu 0 313 1 2338 86 0 0 chr3 155189442 155189732 -62847426 - AluSq SINE Alu -19 294 5 281 206 15 44 chr3 155190359 155190427 -62846731 + L2 LINE L2 3248 3313 0 365 258 22 0 chr3 155190430 155190519 -62846639 + MIR SINE MIR 82 172 -90 444 118 0 0 chr3 155190866 155190934 -62846224 + (TATG)n Simple_repeat Simple_repeat 2 69 0 873 169 0 20 chr3 155190936 155191084 -62846074 - FRAM SINE Alu -30 146 2 1162 149 11 0 chr3 155191088 155191262 -62845896 - AluSg/x SINE Alu -7 305 130 2223 200 31 27 chr3 155191909 155192682 -62844476 - L1P5 LINE L1 -692 5459 4694 2130 117 3 22 chr3 155193143 155193459 -62843699 + AluSg SINE Alu 1 310 0 1198 254 125 15 chr3 155193534 155193920 -62843238 - MLT1D LTR MaLR -12 481 67 1692 156 39 26 chr3 155394141 155394449 -62642709 - AluJb SINE Alu 0 312 1 2256 105 0 0 chr3 155396328 155396624 -62640534 + AluSc SINE Alu 1 296 -13 255 343 27 41 chr3 155398600 155398746 -62638412 - MER5A DNA MER1_type -25 164 21 1203 157 117 111 chr3 155398812 155399181 -62637977 - MLT1A2 LTR MaLR 0 374 4 1514 191 19 67 chr3 155400508 155400869 -62636289 - MLT2C1 LTR ERVL -48 349 6 1024 185 120 3 chr3 155400881 155401318 -62635840 - ERVL-C1 LTR ERVL -16 5748 5234 * 1662 123 16 4 chr3 155401315 155401566 -62635592 - ERVL-C1 LTR ERVL -1133 4631 4378 1448 168 11 21 chr3 155401566 155401851 -62635307 + AluSc SINE Alu 2 283 -26 2171 194 35 24 chr3 155404361 155404376 -62632782 + MLT1C LTR MaLR 3 16 -451 2272 125 141 16 chr3 155404376 155404753 -62632405 - MSTB LTR MaLR 0 426 3 2171 194 35 24 chr3 155404753 155405196 -62631962 + MLT1C LTR MaLR 16 466 -1 1892 228 101 15 chr3 155406128 155406602 -62630556 + MLT2B2 LTR ERVL 1 515 0 417 263 64 68 chr3 155406936 155407187 -62629971 - MLT1J LTR MaLR -30 481 232 223 407 17 0 chr3 155407346 155407464 -62629694 - L2 LINE L2 -257 3015 2896 262 203 102 0 chr3 155407755 155407814 -62629344 - L2 LINE L2 -282 2990 2926 333 206 76 11 chr3 155408346 155408438 -62628720 - MER112 DNA MER1_type -7 253 156 239 319 64 11 chr3 155408443 155408618 -62628540 - MLT1J2 LTR MaLR -8 424 263 1592 108 0 9 chr3 155408945 155409157 -62628001 + AluSq SINE Alu 1 210 -103 254 194 90 0 chr3 155409618 155409685 -62627473 + L1MC4a LINE L1 5562 5634 -487 380 241 0 11 chr3 155409804 155409891 -62627267 + L1MC4a LINE L1 5834 5919 -1889 395 290 107 43 chr3 155410274 155410574 -62626584 + L1MC/D LINE L1 4723 5041 -1105 310 217 81 99 chr3 155410647 155410808 -62626350 + L1MC/D LINE L1 5174 5331 -815 268 349 41 0 chr3 155410808 155410954 -62626204 + L1MC/D LINE L1 5582 5733 -2075 190 399 84 0 chr3 155411724 155411927 -62625231 - L2 LINE L2 -655 2659 2440 1475 144 30 8 chr3 155412027 155412291 -62624867 + AluY SINE Alu 31 300 -11 6282 197 43 30 chr3 155412296 155413408 -62623750 - ERVL LTR ERVL -1384 4380 3247 2003 143 7 0 chr3 155413408 155413702 -62623456 + AluSx SINE Alu 2 297 -15 6282 197 43 30 chr3 155413702 155413876 -62623282 - ERVL LTR ERVL -2517 3247 3077 1902 205 27 10 chr3 155413879 155414283 -62622875 - MLT1C LTR MaLR 0 467 57 275 343 57 0 chr3 155416426 155416531 -62620627 - L2 LINE L2 0 3272 3162 195 42 0 0 chr3 155416533 155416557 -62620601 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 302 349 89 15 chr3 155416711 155416996 -62620162 - L2 LINE L2 -213 3059 2752 335 321 25 43 chr3 155417011 155417173 -62619985 - MER117 DNA MER1_type -34 163 5 191 370 65 9 chr3 155417244 155417352 -62619806 - L2 LINE L2 -595 2719 2606 330 273 193 13 chr3 155417353 155417503 -62619655 + MER5B DNA MER1_type 1 177 -1 332 248 30 8 chr3 155417706 155417825 -62619333 - MIR SINE MIR -54 154 69 578 304 104 22 chr3 155419276 155419506 -62617652 + MIR SINE MIR 10 258 -4 1333 156 25 0 chr3 155419705 155419949 -62617209 + L1 LINE L1 4075 4324 -1822 473 196 131 0 chr3 155420295 155420402 -62616756 + L2 LINE L2 3192 3312 -1 757 160 64 0 chr3 155421625 155421872 -62615286 + L1MC2 LINE L1 6043 6343 -1 299 238 63 49 chr3 155423337 155423480 -62613678 + MLT1J2 LTR MaLR 65 209 -241 467 250 130 11 chr3 155423799 155423983 -62613175 - L1ME3A LINE L1 -5 6165 5960 404 298 87 28 chr3 155424284 155424640 -62612518 + L1M4 LINE L1 2736 3112 -3034 2148 243 104 9 chr3 155424646 155425288 -62611870 + HsTC2a DNA Tc2 1 703 -41 454 250 0 10 chr3 155425537 155425641 -62611517 - MER58 DNA MER1_type 0 2420 2318 386 220 0 33 chr3 155425658 155425749 -62611409 - MER58 DNA MER1_type -122 93 6 289 326 8 57 chr3 155425787 155426051 -62611107 + L1M4 LINE L1 3420 3670 -2476 436 171 34 0 chr3 155426171 155426259 -62610899 + L1MA4A LINE L1 6190 6280 -23 248 229 67 67 chr3 155426803 155426908 -62610250 + MIR SINE MIR 8 112 -150 1858 152 7 10 chr3 155427009 155427299 -62609859 + AluJb SINE Alu 1 289 -23 263 262 230 31 chr3 155427587 155427778 -62609380 + MIR SINE MIR 10 238 -24 820 303 58 15 chr3 155428662 155428992 -62608166 + L2 LINE L2 2584 2927 -387 366 289 31 47 chr3 155429265 155429393 -62607765 + MIR3 SINE MIR 43 168 -40 344 288 79 29 chr3 155429573 155429712 -62607446 - MIR3 SINE MIR -21 187 42 392 288 41 29 chr3 155429769 155429874 -62607284 - MIR SINE MIR -7 255 146 895 216 5 49 chr3 155429874 155429983 -62607175 + MER45A DNA AcHobo 1 100 -1481 2614 41 0 0 chr3 155429983 155430277 -62606881 - AluY SINE Alu -17 294 1 895 216 5 49 chr3 155430277 155430352 -62606806 + MER45A DNA AcHobo 100 177 -1 392 288 41 29 chr3 155430352 155430416 -62606742 - MIR SINE MIR -116 146 84 425 241 62 45 chr3 155430592 155430704 -62606454 + MER81 DNA DNA 1 114 0 268 325 62 19 chr3 155430979 155431139 -62606019 + MIR3 SINE MIR 4 170 -38 740 256 17 6 chr3 155431269 155431449 -62605709 + MER63A DNA MER1_type 1 182 -28 239 226 75 0 chr3 155431564 155431617 -62605541 - L2 LINE L2 -252 3061 3005 365 281 83 0 chr3 155431808 155431929 -62605229 - L2 LINE L2 -605 2709 2579 412 284 60 0 chr3 155431933 155432049 -62605109 - L2 LINE L2 0 3272 3150 451 288 14 36 chr3 155432080 155432219 -62604939 - MIR SINE MIR -21 241 106 297 317 93 55 chr3 155433062 155433245 -62603913 + MIR SINE MIR 28 217 -45 426 264 52 75 chr3 155435386 155435598 -62601560 - L2 LINE L2 -1 3271 3065 188 304 206 21 chr3 155436804 155436998 -62600160 + L3b LINE CR1 1219 1448 -135 418 198 51 96 chr3 155438024 155438181 -62598977 - L2 LINE L2 -4 3309 3160 247 240 72 24 chr3 155438857 155438982 -62598176 - MIR SINE MIR -46 216 86 2504 64 0 0 chr3 155440274 155440569 -62596589 + AluY SINE Alu 1 295 -16 453 242 0 0 chr3 155441183 155441282 -62595876 - MIR SINE MIR 0 262 164 * 606 286 58 5 chr3 155441273 155441479 -62595679 + MIR SINE MIR 30 246 -16 244 262 27 108 chr3 155441917 155442011 -62595147 + L2 LINE L2 3075 3175 -138 1719 168 135 48 chr3 155442011 155442403 -62594755 - MSTA LTR MaLR -2 426 1 244 262 27 108 chr3 155442403 155442465 -62594693 + L2 LINE L2 3175 3296 -17 228 184 0 0 chr3 155442465 155442503 -62594655 + MIR SINE MIR 214 251 -11 1898 129 18 0 chr3 155442711 155442991 -62594167 + AluSx SINE Alu 17 301 -11 2762 99 3 3 chr3 155443009 155443364 -62593794 + THE1A LTR MaLR 1 355 0 2128 143 114 19 chr3 155443710 155444087 -62593071 - MSTA LTR MaLR 0 428 16 1503 135 4 39 chr3 155444661 155444920 -62592238 + AluJo SINE Alu 25 274 -38 390 195 12 0 chr3 155445097 155445179 -62591979 + MER5A DNA MER1_type 5 87 -102 722 206 39 13 chr3 155446044 155446199 -62590959 + MER5B DNA MER1_type 2 160 -18 2846 132 109 0 chr3 155446199 155446647 -62590511 - MER61D LTR ERV1 0 501 5 1997 202 128 12 chr3 155447095 155447525 -62589633 - MLT1F LTR MaLR -6 536 57 721 269 111 57 chr3 155447577 155448001 -62589157 + MLT1K LTR MaLR 138 584 -4 372 316 71 25 chr3 155448198 155448394 -62588764 + MIR SINE MIR 2 206 -56 2036 141 0 13 chr3 155451383 155451688 -62585470 - AluSx SINE Alu -9 303 3 759 194 146 0 chr3 155451939 155452104 -62585054 - MER5A DNA MER1_type 0 189 1 2586 65 0 0 chr3 155452489 155452795 -62584363 + AluY SINE Alu 1 306 -5 199 243 0 0 chr3 155454330 155454367 -62582791 - MIR SINE MIR -61 147 111 1432 202 35 0 chr3 155454899 155455156 -62582002 + Tigger7 DNA MER2_type 2 267 -2220 459 179 32 0 chr3 155455154 155455249 -62581909 + Tigger7 DNA MER2_type 2393 2490 -1 * 5225 170 41 13 chr3 155455439 155457055 -62580103 + L1MB2 LINE L1 4514 6171 0 25 0 0 0 chr3 155457259 155457284 -62579874 + AT_rich Low_complexity Low_complexity 1 25 0 196 351 48 36 chr3 155457697 155457862 -62579296 + MER5A DNA MER1_type 21 187 -2 408 245 57 9 chr3 155458935 155459041 -62578117 - MIR SINE MIR -118 144 34 346 204 11 45 chr3 155460538 155460626 -62576532 - L2 LINE L2 -7 3265 3181 587 286 41 6 chr3 155461972 155462143 -62575015 - MER69A DNA AcHobo 0 177 1 1631 159 0 4 chr3 155462328 155462573 -62574585 - AluSx SINE Alu -15 297 54 866 321 159 5 chr3 155463890 155464470 -62572688 - L2 LINE L2 -838 2476 1808 401 368 52 31 chr3 155464495 155464786 -62572372 - L2 LINE L2 -2028 1286 990 2236 93 0 20 chr3 155465390 155465692 -62571466 + AluSq SINE Alu 1 296 -17 235 346 92 13 chr3 155466400 155466553 -62570605 - L2 LINE L2 -419 2895 2731 2475 54 0 0 chr3 155466639 155466936 -62570222 + AluY SINE Alu 1 297 -14 520 274 40 68 chr3 155467403 155467655 -62569503 - MIR SINE MIR -8 254 10 198 103 0 0 chr3 155468131 155468160 -62568998 + (T)n Simple_repeat Simple_repeat 1 29 0 1741 274 140 11 chr3 155468892 155469534 -62567624 + HsTC2c DNA Tc2 1 725 -4 1549 219 130 52 chr3 155469689 155470260 -62566898 + MLT1L LTR MaLR 1 615 0 262 326 59 53 chr3 155470560 155470747 -62566411 + L3 LINE CR1 1144 1331 -246 308 58 0 3 chr3 155470752 155470796 -62566362 - MADE1 DNA Mariner -40 40 2 426 331 60 38 chr3 155470834 155471011 -62566147 - L2 LINE L2 -83 3230 3041 2593 77 0 0 chr3 155471011 155471324 -62565834 + AluSq SINE Alu 1 313 0 426 331 60 38 chr3 155471324 155471460 -62565698 - L2 LINE L2 -272 3041 2910 592 304 22 13 chr3 155471471 155471701 -62565457 + HsTC2 DNA Tc2 107 338 -1560 1446 326 92 38 chr3 155471706 155472773 -62564385 - L2 LINE L2 -407 2907 1783 295 256 167 0 chr3 155472878 155472968 -62564190 - MIR SINE MIR -77 185 81 1236 215 83 24 chr3 155472968 155473323 -62563835 - MLT1E LTR MaLR 0 593 122 616 218 35 77 chr3 155473327 155473497 -62563661 - MLT1E LTR MaLR -430 163 1 396 329 19 25 chr3 155473583 155473744 -62563414 + L3 LINE CR1 1362 1521 -56 306 246 119 32 chr3 155473840 155473966 -62563192 - MIR3 SINE MIR -5 203 67 203 264 47 101 chr3 155473937 155474066 -62563092 - L2 LINE L2 -43 3270 3149 * 464 289 151 7 chr3 155474215 155474367 -62562791 - MER5A DNA MER1_type -6 183 10 419 171 80 0 chr3 155475530 155475618 -62561540 - L2 LINE L2 0 3313 3219 242 77 0 0 chr3 155475847 155475886 -62561272 - Alu SINE Alu 0 308 270 299 252 43 53 chr3 155477204 155477308 -62559850 + MIR SINE MIR 49 141 -67 194 295 84 48 chr3 155477373 155477539 -62559619 + L2 LINE L2 2811 2982 -290 225 94 0 0 chr3 155477547 155477579 -62559579 + (A)n Simple_repeat Simple_repeat 1 32 0 239 257 29 14 chr3 155477738 155477808 -62559350 + MER91A DNA MER1_type 126 196 0 242 327 0 0 chr3 155478589 155478644 -62558514 - L2 LINE L2 -13 3259 3205 268 284 232 13 chr3 155479179 155479334 -62557824 + MER5A DNA MER1_type 1 189 0 408 219 307 15 chr3 155480146 155480283 -62556875 + MER5B DNA MER1_type 2 178 0 596 216 123 12 chr3 155480300 155480462 -62556696 + MER5A DNA MER1_type 9 188 -1 424 301 57 21 chr3 155480625 155480818 -62556340 - MIR SINE MIR -50 212 13 271 365 26 0 chr3 155480995 155481110 -62556048 - MIR SINE MIR -71 137 20 392 197 306 41 chr3 155481118 155481192 -62555966 + MER5A DNA MER1_type 1 54 -135 2287 88 0 0 chr3 155481192 155481487 -62555671 + AluY SINE Alu 1 295 -16 392 197 306 41 chr3 155481487 155481559 -62555599 + MER5A DNA MER1_type 54 186 -3 283 328 81 9 chr3 155481853 155482037 -62555121 - MIR3 SINE MIR -6 256 55 4388 162 80 19 chr3 155483092 155484733 -62552425 + L1MB1 LINE L1 4280 6019 -149 432 268 124 20 chr3 155484841 155484994 -62552164 - MER5B DNA MER1_type -1 177 9 1126 230 124 89 chr3 155486029 155486555 -62550603 + MLT1K LTR MaLR 17 560 -28 334 315 72 0 chr3 155486867 155486978 -62550180 - MIR SINE MIR -20 242 124 339 303 20 0 chr3 155487102 155487201 -62549957 - MIR SINE MIR -109 153 53 1830 189 58 35 chr3 155487920 155488448 -62548710 + MLT1D LTR MaLR 1 505 0 300 53 0 0 chr3 155490417 155490455 -62546703 + (TG)n Simple_repeat Simple_repeat 1 38 0 197 205 0 0 chr3 155492147 155492186 -62544972 + L2 LINE L2 2198 2236 -1078 382 264 106 83 chr3 155492412 155492666 -62544492 + L2 LINE L2 2659 2918 -396 200 309 41 24 chr3 155493067 155493190 -62543968 - MIR3 SINE MIR -71 137 13 499 292 148 30 chr3 155493255 155493519 -62543639 - MER102b DNA MER1_type -33 308 14 331 171 224 0 chr3 155493746 155493822 -62543336 + MIR SINE MIR 51 143 -119 328 311 134 8 chr3 155496062 155496181 -62540977 + MIR SINE MIR 20 153 -109 465 205 0 133 chr3 155496183 155496349 -62540809 + MER46C DNA MER2_type 2 145 -193 261 217 17 17 chr3 155497541 155497601 -62539557 - L2 LINE L2 -8 3264 3205 244 241 0 0 chr3 155497908 155497966 -62539192 - MER46C DNA MER2_type -33 305 248 420 242 73 16 chr3 155498288 155498412 -62538746 - MER94 DNA DNA -2 132 2 252 309 45 89 chr3 155498631 155499114 -62538044 - L2 LINE L2 -526 2788 2327 216 0 0 0 chr3 155501431 155501455 -62535703 + (CA)n Simple_repeat Simple_repeat 1 24 0 487 279 85 0 chr3 155503055 155503220 -62533938 + MIR SINE MIR 46 224 -38 1444 96 5 0 chr3 155503258 155503457 -62533701 + L1PA7 LINE L1 5940 6139 -15 22 0 0 0 chr3 155503962 155503984 -62533174 + AT_rich Low_complexity Low_complexity 1 22 0 465 111 28 0 chr3 155505446 155505518 -62531640 - MSTB LTR MaLR -352 74 1 197 62 0 31 chr3 155505755 155505787 -62531371 + (TA)n Simple_repeat Simple_repeat 1 31 0 312 172 17 0 chr3 155505788 155505846 -62531312 - L2 LINE L2 -10 3303 3245 266 286 0 0 chr3 155505867 155505930 -62531228 + (TATG)n Simple_repeat Simple_repeat 4 66 0 754 234 55 31 chr3 155505935 155506192 -62530966 + HAL1 LINE L1 1490 1752 -755 547 247 71 94 chr3 155506418 155506558 -62530600 + MIR SINE MIR 14 147 -115 1652 121 19 102 chr3 155506558 155506871 -62530287 + AluSx SINE Alu 1 287 -25 547 247 71 94 chr3 155506871 155506985 -62530173 + MIR SINE MIR 147 262 0 466 228 76 29 chr3 155507342 155507513 -62529645 + HAL1b LINE L1 746 924 -424 2793 292 65 68 chr3 155507777 155507926 -62529232 - L2 LINE L2 -1 3312 3164 2361 110 33 33 chr3 155507926 155508290 -62528868 - THE1B LTR MaLR 0 364 1 2793 292 65 68 chr3 155508290 155510411 -62526747 - L2 LINE L2 -149 3164 1038 1270 248 128 55 chr3 155510432 155510973 -62526185 + MLT1H1 LTR MaLR 16 555 0 505 311 84 34 chr3 155511044 155511340 -62525818 - L2 LINE L2 -2338 976 666 561 320 81 0 chr3 155511344 155511566 -62525592 + MIR SINE MIR 2 241 -21 938 314 78 16 chr3 155511642 155512079 -62525079 - L2 LINE L2 -2718 596 133 297 344 73 0 chr3 155512473 155512569 -62524589 - MER91A DNA MER1_type -1 195 93 913 264 53 17 chr3 155512891 155513190 -62523968 + MLT1K LTR MaLR 134 443 -145 1566 182 7 14 chr3 155513217 155513492 -62523666 - AluJb SINE Alu -39 273 1 1240 261 133 6 chr3 155513722 155514212 -62522946 + L2 LINE L2 16 567 -2747 937 271 90 19 chr3 155514223 155514647 -62522511 + L2 LINE L2 1174 1627 -1687 2610 236 124 29 chr3 155514675 155515894 -62521264 + L2 LINE L2 1916 3313 0 1126 219 94 37 chr3 155515921 155516218 -62520940 - MLT1A1 LTR MaLR 0 365 52 233 355 16 27 chr3 155516251 155516434 -62520724 + MIR SINE MIR 82 262 0 577 172 13 0 chr3 155517340 155517491 -62519667 + CT-rich Low_complexity Low_complexity 1 153 0 198 0 0 0 chr3 155517882 155517904 -62519254 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 1754 159 0 77 chr3 155518112 155518439 -62518719 - AluJb SINE Alu -10 302 1 9068 132 11 19 chr3 155518716 155520202 -62516956 + L1PA11 LINE L1 3871 5351 -823 2277 93 3 0 chr3 155520202 155520492 -62516666 + AluSx SINE Alu 5 295 -17 9068 132 11 19 chr3 155520492 155521309 -62515849 + L1PA11 LINE L1 5351 6174 0 713 253 9 50 chr3 155521422 155521643 -62515515 + MIR SINE MIR 9 220 -42 21 57 0 0 chr3 155521972 155522007 -62515151 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr3 155522787 155522809 -62514349 + AT_rich Low_complexity Low_complexity 1 22 0 303 49 0 0 chr3 155522855 155522896 -62514262 + (CAA)n Simple_repeat Simple_repeat 1 41 0 180 0 0 0 chr3 155522927 155522947 -62514211 + (A)n Simple_repeat Simple_repeat 1 20 0 504 137 63 0 chr3 155524497 155524592 -62512566 - MER5A DNA MER1_type -80 109 9 1823 23 0 14 chr3 155524714 155524931 -62512227 + L1PA2 LINE L1 5942 6155 0 7995 122 23 3 chr3 155525258 155526465 -62510693 + Tigger3b DNA MER2_type 1 1231 0 255 61 0 0 chr3 155529554 155529587 -62507571 + (TG)n Simple_repeat Simple_repeat 2 34 0 297 333 61 43 chr3 155531179 155531458 -62505700 + L2 LINE L2 2456 2739 -575 621 262 91 35 chr3 155531969 155532396 -62504762 - L1MDa LINE L1 -4812 1728 1278 2130 79 61 0 chr3 155533124 155533402 -62503756 - AluSc SINE Alu -14 295 1 289 279 183 0 chr3 155533970 155534074 -62503084 - MIR SINE MIR -61 147 25 571 236 43 37 chr3 155534634 155534795 -62502363 - MIR SINE MIR -81 181 20 186 287 109 30 chr3 155535814 155535915 -62501243 - MIR SINE MIR -63 145 37 700 223 99 17 chr3 155536190 155536423 -62500735 + MER112 DNA MER1_type 5 256 0 24 32 0 0 chr3 155536821 155536852 -62500306 + AT_rich Low_complexity Low_complexity 1 31 0 181 374 15 15 chr3 155538028 155538159 -62498999 + L2 LINE L2 2728 2858 -456 1127 201 5 5 chr3 155538363 155538567 -62498591 + MLT1A1 LTR MaLR 1 204 -161 2415 95 62 40 chr3 155538672 155538934 -62498224 + LTR49-int LTR ERV1 5923 6199 -132 2432 93 3 3 chr3 155538934 155539246 -62497912 + AluSx SINE Alu 1 312 0 2415 95 62 40 chr3 155539246 155539383 -62497775 + LTR49-int LTR ERV1 6199 6331 0 1131 124 91 9 chr3 155539383 155539593 -62497565 + LTR49 LTR ERV1 1 227 -368 459 35 0 0 chr3 155539615 155539672 -62497486 + (CA)n Simple_repeat Simple_repeat 2 58 0 33 56 0 0 chr3 155540624 155540678 -62496480 + AT_rich Low_complexity Low_complexity 1 54 0 833 253 67 64 chr3 155540743 155541040 -62496118 - MLT1J LTR MaLR -146 365 68 300 293 0 17 chr3 155541123 155541241 -62495917 - L1MC/D LINE L1 -1985 5823 5722 267 309 24 0 chr3 155541741 155541825 -62495333 + GA-rich Low_complexity Low_complexity 1 86 0 260 262 0 16 chr3 155542204 155542265 -62494893 - MLT1K LTR MaLR -342 246 187 401 254 100 12 chr3 155542332 155542514 -62494644 + MIR SINE MIR 21 214 -48 365 268 197 10 chr3 155542672 155542870 -62494288 + L1MC4 LINE L1 6762 6996 -1046 1143 281 75 16 chr3 155543323 155543737 -62493421 - LTR16A LTR ERVL 0 450 1 324 281 0 24 chr3 155543900 155543982 -62493176 + MER81 DNA DNA 18 97 -17 2572 337 57 27 chr3 155544195 155545495 -62491663 - ERVL LTR ERVL -638 5126 3788 409 311 56 31 chr3 155545564 155545725 -62491433 - MLT1H LTR MaLR 0 549 385 479 317 22 9 chr3 155545885 155546143 -62491015 - LTR16A LTR ERVL -154 296 4 1916 149 73 81 chr3 155546885 155547058 -62490100 + MSTB LTR MaLR 1 174 -252 2494 61 0 0 chr3 155547058 155547351 -62489807 + AluY SINE Alu 1 293 -18 1916 149 73 81 chr3 155547351 155547599 -62489559 + MSTB LTR MaLR 174 419 -7 545 219 23 0 chr3 155548835 155548963 -62488195 + MIR3 SINE MIR 40 170 -38 1687 163 74 14 chr3 155548988 155549338 -62487820 + LTR52 LTR ERVL 41 411 -10 1307 174 54 35 chr3 155549372 155549688 -62487470 - MER33 DNA MER1_type -2 322 1 283 206 309 0 chr3 155549751 155549877 -62487281 - MER104 DNA Tc2 -1 179 15 24 32 0 0 chr3 155549880 155549911 -62487247 + AT_rich Low_complexity Low_complexity 1 31 0 1910 187 6 11 chr3 155550134 155550481 -62486677 + MLT1A1 LTR MaLR 21 365 0 531 234 30 42 chr3 155550550 155550717 -62486441 - MIR SINE MIR -38 224 60 1705 206 43 0 chr3 155552281 155552606 -62484552 + MLT1A1-int LTR MaLR 1300 1638 -97 416 183 77 0 chr3 155552706 155552810 -62484348 + MLT1A1-int LTR MaLR 1624 1735 0 2140 157 14 20 chr3 155552810 155553166 -62483992 + MLT1A1 LTR MaLR 1 354 -11 553 295 37 23 chr3 155553203 155553420 -62483738 + L2 LINE L2 3090 3309 -4 401 282 113 5 chr3 155553389 155553584 -62483574 - MIR SINE MIR -37 225 10 * 739 290 88 62 chr3 155553585 155554129 -62483029 - MLT1L LTR MaLR -4 611 54 2003 258 60 25 chr3 155554129 155554698 -62482460 - MLT1G LTR MaLR 0 590 2 180 152 0 0 chr3 155556204 155556237 -62480921 + A-rich Low_complexity Low_complexity 3 35 0 240 306 159 27 chr3 155556335 155556593 -62480565 - L2 LINE L2 0 3313 3022 22 0 0 0 chr3 155557251 155557273 -62479885 + AT_rich Low_complexity Low_complexity 1 22 0 628 283 40 6 chr3 155558232 155558405 -62478753 - MIR3 SINE MIR 0 208 30 269 306 31 10 chr3 155558505 155558603 -62478555 + L1ME4a LINE L1 4493 4592 -1554 48 43 0 0 chr3 155558724 155558793 -62478365 + AT_rich Low_complexity Low_complexity 1 69 0 630 309 50 50 chr3 155559246 155559783 -62477375 + L1ME4a LINE L1 5311 5847 -274 1322 97 126 10 chr3 155560241 155560447 -62476711 + MER30 DNA MER1_type 1 230 0 198 0 0 0 chr3 155561120 155561142 -62476016 + (T)n Simple_repeat Simple_repeat 1 22 0 503 281 47 6 chr3 155561551 155561722 -62475436 - L2 LINE L2 0 3313 3136 526 247 78 0 chr3 155562063 155562229 -62474929 - LTR33 LTR ERVL -2 519 341 335 280 95 52 chr3 155562259 155562491 -62474667 - LTR33A LTR ERVL -269 254 13 756 168 0 23 chr3 155565711 155565842 -62471316 - FRAM SINE Alu -8 168 41 392 50 0 17 chr3 155565844 155565904 -62471254 + (TTTTA)n Simple_repeat Simple_repeat 2 60 0 835 164 0 0 chr3 155565904 155566026 -62471132 - AluSq/x SINE Alu -190 122 1 471 250 155 0 chr3 155566060 155566208 -62470950 + MIR SINE MIR 19 189 -73 2106 102 36 20 chr3 155566344 155566649 -62470509 + AluSx SINE Alu 3 312 0 1982 158 3 0 chr3 155566883 155567181 -62469977 - AluJb SINE Alu -12 300 2 407 241 109 69 chr3 155567439 155567848 -62469310 + L1ME4a LINE L1 5522 5950 -171 1889 118 0 8 chr3 155569723 155569986 -62467172 - AluSq SINE Alu -52 261 1 2659 101 21 8 chr3 155569986 155570371 -62466787 + MER61-int LTR ERV1 3484 3873 -1344 232 240 10 94 chr3 155570426 155570522 -62466636 + LTR27 LTR ERV1 549 636 0 507 70 14 0 chr3 155570531 155570602 -62466556 - L1P4 LINE L1 -635 5531 5460 444 247 206 0 chr3 155570790 155570936 -62466222 - MER5A DNA MER1_type -3 186 11 259 322 92 40 chr3 155571315 155571467 -62465691 - MIR SINE MIR -79 183 24 2348 93 3 3 chr3 155571736 155572036 -62465122 - AluSx SINE Alu -12 300 1 287 200 38 62 chr3 155572826 155572906 -62464252 - L2 LINE L2 -6 3307 3230 2115 134 3 28 chr3 155573008 155573328 -62463830 - AluSx SINE Alu 0 312 1 2057 113 30 23 chr3 155573942 155574244 -62462914 - AluSg SINE Alu -6 304 1 207 162 0 0 chr3 155575045 155575082 -62462076 + CT-rich Low_complexity Low_complexity 4 40 0 549 80 0 0 chr3 155576364 155576439 -62460719 + (TG)n Simple_repeat Simple_repeat 1 75 0 377 133 0 111 chr3 155577363 155577498 -62459660 - AluSq/x SINE Alu -183 120 1 1058 188 28 32 chr3 155578156 155578406 -62458752 - L1MD3 LINE L1 -3 7992 7744 2858 183 37 29 chr3 155578411 155579033 -62458125 + L1MB4 LINE L1 4094 4720 -1426 4918 181 25 16 chr3 155579116 155580305 -62456853 + L1MB4 LINE L1 4966 6178 -2 793 261 145 9 chr3 155580723 155581041 -62456117 + L2 LINE L2 2904 3264 -49 1474 167 0 96 chr3 155581120 155581455 -62455703 + AluJo SINE Alu 1 303 -9 181 25 0 100 chr3 155582351 155582391 -62454767 + (GGGA)n Simple_repeat Simple_repeat 3 38 0 377 297 19 32 chr3 155582693 155582848 -62454310 + MIR3 SINE MIR 5 157 -51 1960 179 21 8 chr3 155583807 155584181 -62452977 - L1MC4a LINE L1 -1218 6590 6212 405 253 0 30 chr3 155584717 155584816 -62452342 - LTR67 LTR ERVL -4 553 458 404 313 16 8 chr3 155585489 155585617 -62451541 + MIR SINE MIR 18 146 -116 492 260 78 26 chr3 155585621 155585813 -62451345 + MIR SINE MIR 4 205 -57 249 119 0 0 chr3 155587276 155587318 -62449840 + (TA)n Simple_repeat Simple_repeat 2 43 0 2131 143 0 0 chr3 155587318 155587612 -62449546 - AluSq SINE Alu -19 294 1 186 103 0 0 chr3 155587892 155587921 -62449237 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 247 228 174 94 chr3 155587941 155588090 -62449068 - MLT1K LTR MaLR -411 177 17 1412 152 6 118 chr3 155588517 155588839 -62448319 - AluJo SINE Alu -12 290 5 665 298 85 20 chr3 155588968 155589321 -62447837 + L2 LINE L2 2927 3302 -11 2239 101 40 0 chr3 155589646 155589944 -62447214 - AluSx SINE Alu -2 310 1 2055 148 0 7 chr3 155589946 155590250 -62446908 - AluJb SINE Alu -10 302 1 2798 70 94 17 chr3 155590730 155591146 -62446012 - LTR7 LTR ERV1 -2 448 1 217 287 0 20 chr3 155593370 155593471 -62443687 + G-rich Low_complexity Low_complexity 6 104 0 23 54 0 0 chr3 155594859 155594896 -62442262 + GC_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr3 155596683 155596711 -62440447 + AT_rich Low_complexity Low_complexity 1 28 0 190 229 83 0 chr3 155599228 155599276 -62437882 + L2 LINE L2 3262 3313 0 216 0 0 0 chr3 155599765 155599789 -62437369 + (T)n Simple_repeat Simple_repeat 1 24 0 531 123 0 12 chr3 155599855 155599936 -62437222 - MADE1 DNA Mariner 0 80 1 912 214 6 6 chr3 155601196 155601374 -62435784 - MER45A DNA AcHobo 0 178 1 585 230 61 36 chr3 155602957 155603122 -62434036 - MIR SINE MIR -31 231 63 377 297 19 32 chr3 155604076 155604231 -62432927 - MIR3 SINE MIR -51 157 5 572 293 82 66 chr3 155604697 155605196 -62431962 + MLT1J LTR MaLR 5 511 0 215 264 208 10 chr3 155605252 155605377 -62431781 - MIR3 SINE MIR -77 131 12 381 226 85 64 chr3 155605377 155605592 -62431566 + MER20 DNA MER1_type 1 214 -5 224 235 153 31 chr3 155605727 155605825 -62431333 - L2 LINE L2 -2076 1238 1129 233 385 0 7 chr3 155606012 155606147 -62431011 - L2 LINE L2 -2559 755 622 315 0 0 0 chr3 155606595 155606630 -62430528 + (CA)n Simple_repeat Simple_repeat 2 36 0 326 353 70 31 chr3 155606844 155607232 -62429926 + MLT1K LTR MaLR 186 588 0 191 342 79 9 chr3 155607256 155607370 -62429788 + L2 LINE L2 3180 3301 -12 209 214 0 0 chr3 155607401 155607443 -62429715 + MER5A DNA MER1_type 1 42 -147 180 0 0 0 chr3 155607473 155607493 -62429665 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 669 106 43 0 chr3 155607496 155607590 -62429568 - FRAM SINE Alu -30 146 49 2257 105 3 0 chr3 155609422 155609716 -62427442 - AluSq SINE Alu -16 297 3 471 250 155 0 chr3 155609852 155610000 -62427158 - MIR SINE MIR -73 189 19 835 164 0 0 chr3 155610034 155610156 -62427002 + AluSq/x SINE Alu 1 122 -190 392 50 0 17 chr3 155610156 155610216 -62426942 + (TAAAA)n Simple_repeat Simple_repeat 2 60 0 756 168 0 23 chr3 155610218 155610349 -62426809 + FRAM SINE Alu 41 168 -8 2153 103 30 0 chr3 155611258 155611558 -62425600 - AluSx SINE Alu -1 311 3 222 62 0 0 chr3 155612112 155612144 -62425014 + (A)n Simple_repeat Simple_repeat 1 32 0 272 304 31 108 chr3 155612680 155612966 -62424192 - L2 LINE L2 -84 3188 2925 890 268 87 23 chr3 155613016 155613466 -62423692 + MLT1J LTR MaLR 3 511 0 221 281 45 0 chr3 155613515 155613604 -62423554 - L2 LINE L2 -21 3251 3159 458 265 123 6 chr3 155613649 155613811 -62423347 - MIR SINE MIR -3 259 79 1666 152 66 39 chr3 155613864 155614226 -62422932 + THE1C LTR MaLR 1 372 -3 4298 179 30 20 chr3 155614460 155615360 -62421798 - L1MC4a LINE L1 -2 7806 6898 5360 101 1 8 chr3 155615360 155616096 -62421062 + LTR17 LTR ERV1 1 731 -49 824 231 113 0 chr3 155616119 155616331 -62420827 - L1MC4a LINE L1 -903 6905 6670 192 250 31 16 chr3 155619302 155619366 -62417792 - MIR SINE MIR -170 92 28 351 0 0 0 chr3 155619604 155619643 -62417515 + (T)n Simple_repeat Simple_repeat 1 39 0 257 302 71 0 chr3 155619788 155619914 -62417244 + MIR SINE MIR 20 154 -108 324 219 9 48 chr3 155619926 155620031 -62417127 - MARNA DNA Mariner -212 374 274 1679 171 0 4 chr3 155620110 155620379 -62416779 + AluJo SINE Alu 23 290 -22 1504 96 0 5 chr3 155620386 155620574 -62416584 + AluSq SINE Alu 1 187 -126 416 283 96 16 chr3 155620699 155620886 -62416272 + MIR SINE MIR 56 257 -5 650 273 141 0 chr3 155621256 155621476 -62415682 + MIR SINE MIR 2 252 -10 332 238 346 5 chr3 155621487 155621701 -62415457 - L2 LINE L2 -6 3307 3021 496 277 66 97 chr3 155622216 155622743 -62414415 + MLT1J LTR MaLR 1 511 0 912 228 20 33 chr3 155623568 155623884 -62413274 + L1M3 LINE L1 5216 5528 -652 329 256 135 45 chr3 155624005 155624138 -62413020 + MER63A DNA MER1_type 66 210 0 351 306 93 50 chr3 155624486 155625059 -62412099 - HAL1b LINE L1 -710 638 71 189 282 28 56 chr3 155626709 155626777 -62410381 - MIR3 SINE MIR -26 182 117 300 269 127 15 chr3 155626777 155626911 -62410247 + MER5A DNA MER1_type 1 149 -40 451 55 0 0 chr3 155627549 155627604 -62409554 - L1PA7 LINE L1 -278 5876 5822 1113 176 115 80 chr3 155627934 155628309 -62408849 - MLT1C LTR MaLR -2 388 1 222 311 239 6 chr3 155628368 155628548 -62408610 + MIR SINE MIR 41 262 0 198 191 191 11 chr3 155628992 155629086 -62408072 - L2 LINE L2 -276 3037 2927 1431 152 3 118 chr3 155629218 155629541 -62407617 + AluJo SINE Alu 5 290 -12 247 228 174 94 chr3 155629968 155630117 -62407041 + MLT1K LTR MaLR 17 177 -411 186 103 0 0 chr3 155630137 155630166 -62406992 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 2325 114 0 3 chr3 155630445 155630752 -62406406 + AluSx SINE Alu 1 306 -6 1890 151 6 35 chr3 155631367 155631684 -62405474 + AluSx SINE Alu 1 308 -4 287 200 38 62 chr3 155631792 155631872 -62405286 + L2 LINE L2 3230 3307 -6 2348 93 3 3 chr3 155632662 155632962 -62404196 + AluSx SINE Alu 1 300 -12 273 316 92 40 chr3 155633231 155633383 -62403775 + MIR SINE MIR 24 183 -79 444 247 206 0 chr3 155633762 155633908 -62403250 + MER5A DNA MER1_type 11 186 -3 507 70 14 0 chr3 155634096 155634167 -62402991 + L1P4 LINE L1 5460 5531 -635 232 240 10 94 chr3 155634176 155634272 -62402886 - LTR27 LTR ERV1 0 636 549 8547 183 39 50 chr3 155634327 155637552 -62399606 - LTR27-int LTR ERV1 -1139 6066 632 4215 172 10 22 chr3 155637561 155638399 -62398759 - LTR27-int LTR ERV1 -390 4827 2174 2054 170 86 7 chr3 155638403 155638809 -62398349 - LTR27-int LTR ERV1 -6246 845 408 406 273 113 63 chr3 155638809 155639047 -62398111 - LTR27-int LTR ERV1 -6840 251 2 2920 164 4 34 chr3 155639135 155639240 -62397918 - LTR27 LTR ERV1 -130 506 399 1931 115 0 18 chr3 155639240 155639518 -62397640 - AluSg SINE Alu -4 306 34 2920 164 4 34 chr3 155639518 155639946 -62397212 - LTR27 LTR ERV1 -237 399 10 3889 114 34 18 chr3 155639946 155640569 -62396589 + L1PA16 LINE L1 5534 6166 0 1976 138 3 3 chr3 155640571 155640898 -62396260 + AluSq SINE Alu 1 327 0 245 348 59 0 chr3 155640951 155641069 -62396089 - MER91A DNA MER1_type -68 128 4 2294 108 0 0 chr3 155642079 155642384 -62394774 - AluSx SINE Alu -7 305 1 242 188 42 0 chr3 155644544 155644592 -62392566 + MER5A DNA MER1_type 140 189 0 521 274 105 24 chr3 155644832 155645164 -62391994 + MER113 DNA MER1_type? 7 365 -156 233 235 29 44 chr3 155645373 155645441 -62391717 + L2 LINE L2 3247 3313 0 1526 179 20 115 chr3 155646193 155646602 -62390556 - MLT1A2 LTR MaLR -4 370 1 259 307 39 28 chr3 155646959 155647138 -62390020 + L1ME3A LINE L1 4637 4817 -1329 8283 186 37 18 chr3 155647168 155648748 -62388410 - MER52A LTR ERV1 0 1755 8 409 103 0 0 chr3 155648844 155648902 -62388256 + FLAM SINE Alu 75 132 -11 830 250 93 74 chr3 155648904 155649150 -62388008 + L1ME3A LINE L1 5193 5433 -737 2221 130 3 0 chr3 155649150 155649458 -62387700 + AluSq SINE Alu 1 309 -4 830 250 93 74 chr3 155649458 155649833 -62387325 + L1ME3A LINE L1 5433 5831 -339 1766 146 146 0 chr3 155649833 155650127 -62387031 - MER1B DNA MER1_type 0 337 1 830 250 93 74 chr3 155650127 155650201 -62386957 + L1ME3A LINE L1 5831 5902 -268 198 0 0 0 chr3 155650429 155650451 -62386707 + (A)n Simple_repeat Simple_repeat 1 22 0 608 234 176 5 chr3 155650561 155650766 -62386392 + MER112 DNA MER1_type 12 251 -9 547 262 115 0 chr3 155650801 155650992 -62386166 + MIR SINE MIR 35 247 -15 252 200 0 0 chr3 155651432 155651497 -62385661 + (CA)n Simple_repeat Simple_repeat 1 65 0 309 218 173 38 chr3 155651516 155651649 -62385509 - MIR3 SINE MIR -41 167 17 1851 174 0 16 chr3 155651803 155652114 -62385044 - AluJo SINE Alu 0 312 7 225 169 0 65 chr3 155653585 155653662 -62383496 + G-rich Low_complexity Low_complexity 5 76 0 788 256 63 99 chr3 155653663 155653679 -62383479 + HAL1 LINE L1 1175 1190 -1317 716 216 0 8 chr3 155653679 155653813 -62383345 + FLAM_A SINE Alu 1 133 0 788 256 63 99 chr3 155653813 155653945 -62383213 + HAL1 LINE L1 1190 1325 -1182 2210 85 7 0 chr3 155653945 155654253 -62382905 + AluSp SINE Alu 1 310 0 788 256 63 99 chr3 155654253 155654629 -62382529 + HAL1 LINE L1 1325 1682 -825 26 30 0 0 chr3 155654652 155654685 -62382473 + AT_rich Low_complexity Low_complexity 1 33 0 276 281 46 52 chr3 155655161 155655314 -62381844 + HAL1 LINE L1 2245 2396 -111 22 0 0 0 chr3 155655416 155655438 -62381720 + AT_rich Low_complexity Low_complexity 1 22 0 208 146 0 24 chr3 155655807 155655848 -62381310 + (ATG)n Simple_repeat Simple_repeat 2 41 0 929 133 14 21 chr3 155656052 155656195 -62380963 + AluJ SINE Alu 1 142 -170 7251 58 13 43 chr3 155656294 155658316 -62378842 + SVA Other Other 2 1385 -1 1190 135 12 0 chr3 155658333 155658503 -62378655 + AluJ SINE Alu 122 293 -19 3869 174 32 46 chr3 155658520 155659318 -62377840 - MER54A LTR ERVL 0 901 114 2467 60 0 7 chr3 155659318 155659617 -62377541 + AluY SINE Alu 1 297 -14 3869 174 32 46 chr3 155659617 155659688 -62377470 - MER54A LTR ERVL -787 114 44 515 252 79 46 chr3 155659675 155660061 -62377097 + MLT1H LTR MaLR 73 549 0 * 2385 92 0 3 chr3 155660159 155660462 -62376696 + AluSx SINE Alu 1 302 -10 292 185 62 0 chr3 155661442 155661507 -62375651 + MER113 DNA MER1_type? 64 132 -389 1740 146 4 11 chr3 155662932 155663199 -62373959 - AluJb SINE Alu -13 299 35 222 37 0 0 chr3 155663214 155663241 -62373917 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 364 241 116 0 chr3 155664793 155664905 -62372253 + LTR67 LTR ERVL 427 551 -6 730 265 5 36 chr3 155665847 155666070 -62371088 - AluJb SINE Alu -10 302 87 1287 52 0 7 chr3 155666088 155666271 -62370887 + AluY SINE Alu 130 311 0 364 241 116 0 chr3 155667060 155667172 -62369986 - LTR67 LTR ERVL -6 551 427 1568 218 129 13 chr3 155668957 155669406 -62367752 + Tigger1 DNA MER2_type 1 501 -1917 197 231 205 0 chr3 155669829 155669907 -62367251 + MIR SINE MIR 37 130 -78 308 276 19 19 chr3 155669950 155670055 -62367103 - MER5A DNA MER1_type -22 167 63 1747 202 81 98 chr3 155670211 155670954 -62366204 - L1MC5 LINE L1 -314 7647 6922 2239 111 7 0 chr3 155670954 155671252 -62365906 - AluSp SINE Alu -12 301 2 1747 202 81 98 chr3 155671252 155671468 -62365690 - L1MC5 LINE L1 -1039 6922 6704 220 214 0 0 chr3 155671468 155671510 -62365648 - MER5B DNA MER1_type -135 43 2 449 211 37 0 chr3 155671663 155671772 -62365386 + L1ME LINE L1 5547 5659 -462 1849 139 6 47 chr3 155671772 155672089 -62365069 - AluJo SINE Alu -8 304 1 9874 127 49 1 chr3 155672089 155673606 -62363552 - Tigger1 DNA MER2_type -829 1589 1 907 71 0 0 chr3 155674441 155674554 -62362604 - AluY SINE Alu -69 242 130 1204 171 5 36 chr3 155674572 155674794 -62362364 + AluJo SINE Alu 87 301 -11 1938 111 32 21 chr3 155675691 155675970 -62361188 + AluSg SINE Alu 1 282 -28 217 27 81 0 chr3 155675975 155676012 -62361146 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 887 168 25 61 chr3 155676813 155676934 -62360224 - MER5A DNA MER1_type 0 189 76 2477 69 3 0 chr3 155676934 155677237 -62359921 - AluY SINE Alu -7 304 1 887 168 25 61 chr3 155677237 155677311 -62359847 - MER5A DNA MER1_type -113 76 1 551 175 52 0 chr3 155677537 155677634 -62359524 - MER45A DNA AcHobo -22 156 55 280 322 52 71 chr3 155677797 155678008 -62359150 + L1MC/D LINE L1 5550 5756 -2052 5808 40 12 3 chr3 155678222 155678889 -62358269 - SVA Other Other -4 1382 710 279 167 125 0 chr3 155679630 155679702 -62357456 - MLT1J2 LTR MaLR -215 235 155 1402 203 217 22 chr3 155679740 155679859 -62357299 + MLT1D LTR MaLR 1 95 -410 2558 108 62 23 chr3 155679859 155680292 -62356866 + LTR7 LTR ERV1 1 450 0 1402 203 217 22 chr3 155680292 155680340 -62356818 + MLT1D LTR MaLR 95 132 -373 198 71 0 0 chr3 155680340 155680368 -62356790 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1402 203 217 22 chr3 155680368 155680613 -62356545 + MLT1D LTR MaLR 132 495 -10 317 318 102 40 chr3 155680744 155681018 -62356140 + L2 LINE L2 2568 2858 -456 447 258 60 24 chr3 155681909 155682081 -62355077 - L1ME4a LINE L1 -283 5838 5651 1971 133 6 48 chr3 155682081 155682397 -62354761 + AluJo SINE Alu 2 304 -8 447 258 60 24 chr3 155682397 155682506 -62354652 - L1ME4a LINE L1 -470 5651 5547 288 216 0 0 chr3 155682659 155682710 -62354448 + MER5B DNA MER1_type 2 52 -126 * 1669 204 79 78 chr3 155682701 155682917 -62354241 + L1MC5 LINE L1 6704 6918 -1043 2236 114 3 0 chr3 155682917 155683216 -62353942 + AluSp SINE Alu 2 301 -12 1669 204 79 78 chr3 155683216 155683861 -62353297 + L1MC5 LINE L1 6918 7560 -401 195 69 0 0 chr3 155683878 155683907 -62353251 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 193 389 7 7 chr3 155684114 155684253 -62352905 - MER5A DNA MER1_type -50 139 1 228 263 179 0 chr3 155684263 155684358 -62352800 - MIR SINE MIR -78 130 19 363 263 80 9 chr3 155684685 155684900 -62352258 - L2 LINE L2 -2968 346 33 557 274 137 14 chr3 155685676 155685968 -62351190 + L1MB2 LINE L1 5490 5817 -304 270 222 133 0 chr3 155686412 155686502 -62350656 - MER103 DNA DNA -64 102 1 195 293 27 13 chr3 155686778 155686853 -62350305 - MIR SINE MIR -13 249 174 714 274 249 4 chr3 155686853 155687396 -62349762 + L2 LINE L2 2618 3309 -4 1973 141 133 11 chr3 155689302 155689678 -62347480 - MSTB LTR MaLR -4 422 1 216 288 161 8 chr3 155690604 155690722 -62346436 - MIR SINE MIR -3 259 124 1475 150 108 16 chr3 155691336 155691642 -62345516 + L1MB2 LINE L1 5835 6168 -3 438 275 27 47 chr3 155696488 155696637 -62340521 + MER5A DNA MER1_type 35 180 -9 239 130 0 22 chr3 155696819 155696865 -62340293 + (CATATA)n Simple_repeat Simple_repeat 4 48 0 602 213 326 14 chr3 155697862 155698153 -62339005 + L1MC4 LINE L1 7657 8038 -4 205 224 52 0 chr3 155698878 155698936 -62338222 + CT-rich Low_complexity Low_complexity 6 66 0 674 268 99 9 chr3 155699147 155699360 -62337798 - MIR SINE MIR -11 251 20 814 234 16 10 chr3 155699877 155700069 -62337089 - MER58A DNA MER1_type 0 224 32 2041 111 3 34 chr3 155700207 155700505 -62336653 - AluSp SINE Alu -24 289 1 204 40 0 0 chr3 155700982 155701007 -62336151 + (T)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr3 155701676 155701698 -62335460 + AT_rich Low_complexity Low_complexity 1 22 0 2349 74 3 3 chr3 155702237 155702535 -62334623 + AluSp SINE Alu 1 298 -15 23 86 0 0 chr3 155702826 155702884 -62334274 + AT_rich Low_complexity Low_complexity 1 58 0 2083 115 12 46 chr3 155703314 155703637 -62333521 - AluSx SINE Alu 0 312 1 1351 99 165 50 chr3 155703734 155703976 -62333182 - AluSx SINE Alu -24 288 19 1298 79 40 13 chr3 155704743 155704971 -62332187 + SVA Other Other 635 868 -518 1756 97 11 75 chr3 155704986 155705450 -62331708 + SVA Other Other 433 866 -520 6636 57 9 56 chr3 155705467 155706524 -62330634 + SVA Other Other 433 1442 0 2340 76 10 0 chr3 155707398 155707699 -62329459 - AluY SINE Alu -7 304 1 192 220 60 0 chr3 155708061 155708111 -62329047 + L2 LINE L2 3261 3313 0 1328 161 18 9 chr3 155708281 155708498 -62328660 + AluJo SINE Alu 81 299 -13 1929 82 68 14 chr3 155708736 155709015 -62328143 + AluY SINE Alu 2 295 -16 210 71 0 0 chr3 155709048 155709076 -62328082 + (TA)n Simple_repeat Simple_repeat 1 28 0 291 338 114 70 chr3 155709093 155709212 -62327946 - L2 LINE L2 -18 3254 3142 207 100 0 0 chr3 155709212 155709242 -62327916 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 291 338 114 70 chr3 155709242 155709465 -62327693 - L2 LINE L2 -130 3142 2897 1584 127 20 0 chr3 155710087 155710331 -62326827 + L1PB2 LINE L1 5901 6149 -2 25 0 0 0 chr3 155710331 155710356 -62326802 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr3 155710795 155710818 -62326340 + (TG)n Simple_repeat Simple_repeat 2 24 0 22 70 0 0 chr3 155711996 155712039 -62325119 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr3 155712653 155712674 -62324484 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr3 155713168 155713189 -62323969 + (A)n Simple_repeat Simple_repeat 1 21 0 24 0 0 0 chr3 155714550 155714574 -62322584 + AT_rich Low_complexity Low_complexity 1 24 0 207 333 17 0 chr3 155715780 155715840 -62321318 - L2 LINE L2 -7 3265 3205 260 269 244 26 chr3 155716018 155716174 -62320984 - L2 LINE L2 -215 3057 2868 339 234 86 31 chr3 155716331 155716459 -62320699 - L1ME4a LINE L1 -151 5970 5836 25 51 0 0 chr3 155717579 155717618 -62319540 + AT_rich Low_complexity Low_complexity 1 39 0 332 319 133 0 chr3 155718164 155718277 -62318881 - MIR3 SINE MIR -45 163 36 2202 109 3 0 chr3 155718372 155718665 -62318493 - AluSx SINE Alu -18 294 1 1916 142 45 9 chr3 155719002 155719333 -62317825 + MER2 DNA MER2_type 2 344 0 791 218 79 25 chr3 155720386 155720415 -62316743 - MER58A DNA MER1_type -2204 216 190 2082 134 0 3 chr3 155720415 155720714 -62316444 + AluSc SINE Alu 1 298 -11 791 218 79 25 chr3 155720714 155720886 -62316272 - MER58A DNA MER1_type -2230 190 4 4492 137 33 51 chr3 155721025 155721851 -62315307 - Tigger1 DNA MER2_type 0 2418 1608 855 144 0 0 chr3 155721897 155722022 -62315136 - FLAM_C SINE Alu -18 125 1 8911 145 48 4 chr3 155722022 155723544 -62313614 - Tigger1 DNA MER2_type -829 1589 1 21 36 0 0 chr3 155725066 155725094 -62312064 + AT_rich Low_complexity Low_complexity 1 28 0 2231 146 17 15 chr3 155725119 155725530 -62311628 + L1MB3 LINE L1 5771 6182 -1 189 94 0 0 chr3 155727870 155727902 -62309256 + (CAAAAA)n Simple_repeat Simple_repeat 5 36 0 21 0 0 0 chr3 155730771 155730792 -62306366 + AT_rich Low_complexity Low_complexity 1 21 0 2081 95 4 0 chr3 155731589 155731853 -62305305 - AluSx SINE Alu -24 288 24 998 117 117 15 chr3 155731853 155732050 -62305108 + Tigger7 DNA MER2_type 2275 2491 0 3871 172 28 29 chr3 155733217 155733835 -62303323 + L1MB7 LINE L1 4866 5483 -701 1754 63 5 0 chr3 155733835 155734065 -62303093 - AluSp SINE Alu 0 308 78 3871 172 28 29 chr3 155734065 155734707 -62302451 + L1MB7 LINE L1 5483 6127 -57 368 191 29 0 chr3 155734711 155734796 -62302362 - FLAM_A SINE Alu -1 132 69 221 304 25 12 chr3 155735248 155735398 -62301760 + C-rich Low_complexity Low_complexity 2 246 0 568 287 27 7 chr3 155736249 155736399 -62300759 - MIR SINE MIR -109 153 1 279 340 122 42 chr3 155736602 155736890 -62300268 - L3 LINE CR1 -96 1481 1171 1656 61 5 0 chr3 155737448 155737644 -62299514 - AluSp SINE Alu -39 274 78 3029 134 23 97 chr3 155737644 155738292 -62298866 + L1MB7 LINE L1 5496 6190 6 932 143 0 0 chr3 155738292 155738425 -62298733 - FLAM_C SINE Alu 0 133 1 3029 134 23 97 chr3 155738425 155738460 -62298698 + L1MB7 LINE L1 6190 6125 -59 1542 169 18 18 chr3 155738460 155738733 -62298425 + AluJb SINE Alu 20 292 -20 3029 134 23 97 chr3 155738733 155738779 -62298379 + L1MB7 LINE L1 6124 6172 -12 266 228 66 108 chr3 155738859 155739026 -62298132 + MARNA DNA Mariner 285 444 -142 724 319 86 25 chr3 155740641 155741048 -62296110 + L1MC4a LINE L1 4797 5228 -918 1245 240 107 63 chr3 155741084 155741671 -62295487 + L1MC4a LINE L1 5315 5927 -1881 22 0 0 0 chr3 155742951 155742973 -62294185 + AT_rich Low_complexity Low_complexity 1 22 0 2157 186 99 71 chr3 155744225 155744985 -62292173 - Charlie1a DNA MER1_type -674 781 1 2254 123 0 0 chr3 155746741 155747050 -62290108 - AluSx SINE Alu -3 309 1 460 288 47 80 chr3 155747224 155747326 -62289832 + L1M4 LINE L1 4228 4332 -1814 1769 93 108 4 chr3 155747326 155747605 -62289553 + AluY SINE Alu 1 308 -3 460 288 47 80 chr3 155747605 155747975 -62289183 + L1M4 LINE L1 4332 4684 -1462 2358 70 13 7 chr3 155748623 155748921 -62288237 + AluY SINE Alu 1 300 -11 755 173 0 15 chr3 155748944 155749077 -62288081 + FLAM_A SINE Alu 1 131 -2 184 353 0 98 chr3 155749572 155749612 -62287546 + L2 LINE L2 3141 3183 -89 2104 82 50 0 chr3 155749612 155749892 -62287266 - AluSp SINE Alu -19 294 1 184 353 0 98 chr3 155749892 155749973 -62287185 + L2 LINE L2 3183 3250 -22 22 0 0 0 chr3 155751374 155751396 -62285762 + AT_rich Low_complexity Low_complexity 1 22 0 1864 84 98 25 chr3 155751727 155752012 -62285146 + AluSc SINE Alu 1 306 -3 2377 57 3 32 chr3 155752378 155752694 -62284464 + AluSc SINE Alu 1 307 -2 454 340 44 10 chr3 155752849 155753052 -62284106 - MIR SINE MIR -49 213 4 224 243 79 112 chr3 155755925 155756077 -62281081 - L2 LINE L2 -2 3311 3165 185 0 40 0 chr3 155756718 155756743 -62280415 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 2281 59 0 0 chr3 155756747 155757020 -62280138 - AluY SINE Alu -38 273 1 21 0 0 0 chr3 155757184 155757205 -62279953 + AT_rich Low_complexity Low_complexity 1 21 0 1347 156 101 62 chr3 155757367 155757655 -62279503 + AluJb SINE Alu 2 300 -12 429 214 53 38 chr3 155758025 155758156 -62279002 + Charlie8 DNA MER1_type 38 170 -2247 353 217 47 38 chr3 155758364 155758470 -62278688 - ORSL DNA AcHobo 0 275 169 2074 113 3 10 chr3 155759036 155759357 -62277801 + AluSx SINE Alu 1 319 0 264 30 0 0 chr3 155759568 155759601 -62277557 + (TG)n Simple_repeat Simple_repeat 1 33 0 250 314 99 5 chr3 155760163 155760354 -62276804 - L1 LINE L1 -1856 4290 4082 2585 49 0 0 chr3 155760354 155760658 -62276500 - AluY SINE Alu -7 304 1 2037 173 135 0 chr3 155761014 155761459 -62275699 - MLT1D LTR MaLR 0 505 1 405 220 30 20 chr3 155761723 155761823 -62275335 + L2 LINE L2 3212 3312 -1 308 233 189 0 chr3 155762523 155762613 -62274545 + L2 LINE L2 3202 3308 -5 2764 128 34 2 chr3 155762946 155763415 -62273743 - L1MB3 LINE L1 -2 6181 5698 4423 128 30 48 chr3 155763578 155764377 -62272781 + LTR1 LTR ERV1 1 785 0 362 21 0 21 chr3 155764400 155764448 -62272710 + (TTGTG)n Simple_repeat Simple_repeat 2 48 0 2277 58 0 0 chr3 155764450 155764724 -62272434 - AluY SINE Alu -37 274 1 759 123 0 0 chr3 155764786 155764892 -62272266 + FRAM SINE Alu 57 162 -14 220 328 146 82 chr3 155764899 155765241 -62271917 + L3 LINE CR1 1211 1574 -3 1743 146 82 28 chr3 155765340 155765696 -62271462 - THE1C LTR MaLR 0 375 1 2219 112 0 3 chr3 155766076 155766380 -62270778 + AluSg SINE Alu 1 303 -7 526 276 156 9 chr3 155766380 155766605 -62270553 + L1MC4a LINE L1 5505 5762 -2046 335 100 33 0 chr3 155766888 155766948 -62270210 - MADE1 DNA Mariner -6 74 13 7431 27 22 0 chr3 155766966 155767901 -62269257 - L1PA4 LINE L1 -1 6154 5218 373 226 29 20 chr3 155767967 155768069 -62269089 + L1MC4a LINE L1 5793 5895 -1913 1998 243 45 29 chr3 155768119 155768703 -62268455 + MLT1E LTR MaLR 1 593 0 2090 90 3 72 chr3 155769183 155769504 -62267654 - AluSq SINE Alu -14 299 1 21 36 0 0 chr3 155769854 155769882 -62267276 + AT_rich Low_complexity Low_complexity 1 28 0 980 254 65 56 chr3 155770046 155770597 -62266561 - L1MC4a LINE L1 -1884 5924 5369 1203 143 86 14 chr3 155770994 155771274 -62265884 - MER33 DNA MER1_type 0 324 25 255 132 0 0 chr3 155771278 155771316 -62265842 + MER3 DNA MER1_type 3 40 -169 193 281 34 34 chr3 155771389 155771478 -62265680 + L2 LINE L2 353 441 -2873 703 145 122 0 chr3 155771534 155771665 -62265493 - MER3 DNA MER1_type -29 180 34 258 276 31 0 chr3 155772205 155772303 -62264855 - L1MC/D LINE L1 -1907 5901 5801 325 244 182 62 chr3 155772315 155772557 -62264601 - L1MC4a LINE L1 -1654 6154 5884 837 299 25 0 chr3 155772602 155772880 -62264278 - L1MC4a LINE L1 -1989 5819 5535 246 175 91 110 chr3 155772870 155772894 -62264264 - L1MC/D LINE L1 -1957 5851 5828 * 1818 155 14 7 chr3 155772894 155773190 -62263968 - AluJo SINE Alu -14 298 1 246 175 91 110 chr3 155773190 155773319 -62263839 - L1MC/D LINE L1 -1980 5828 5701 254 281 219 22 chr3 155773377 155773651 -62263507 - L2 LINE L2 -355 2959 2632 231 316 101 0 chr3 155773795 155773874 -62263284 - L2 LINE L2 -65 3207 3121 225 361 23 23 chr3 155773899 155774000 -62263158 + MIR SINE MIR 1 101 -161 294 29 0 0 chr3 155774000 155774035 -62263123 + (TC)n Simple_repeat Simple_repeat 2 36 0 189 0 0 0 chr3 155774034 155774055 -62263103 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 225 361 23 23 chr3 155774035 155774083 -62263075 + MIR SINE MIR 100 130 -132 182 260 0 0 chr3 155774136 155774186 -62262972 + MIR SINE MIR 168 217 -45 23 0 0 0 chr3 155774883 155774906 -62262252 + AT_rich Low_complexity Low_complexity 1 23 0 1283 193 96 23 chr3 155774918 155775271 -62261887 + MLT1B LTR MaLR 1 379 -11 1496 78 0 0 chr3 155776126 155776306 -62260852 + AluSq SINE Alu 124 303 -10 379 266 75 55 chr3 155776382 155776581 -62260577 - L1MC/D LINE L1 -2093 5715 5513 222 300 29 29 chr3 155776640 155776710 -62260448 - MIR SINE MIR -180 82 13 2316 161 56 2 chr3 155776786 155777196 -62259962 - MSTB1 LTR MaLR 0 432 1 277 283 107 54 chr3 155777354 155778096 -62259062 - L1MC/D LINE L1 -1479 4667 3887 246 320 34 20 chr3 155778178 155778325 -62258833 + L1 LINE L1 3574 3722 -2424 840 143 0 0 chr3 155778332 155778451 -62258707 + FLAM_C SINE Alu 1 119 -24 33 66 0 0 chr3 155778455 155778516 -62258642 + AT_rich Low_complexity Low_complexity 1 61 0 277 242 152 18 chr3 155778545 155778710 -62258448 + L1 LINE L1 4212 4398 -1748 426 219 76 17 chr3 155779145 155779264 -62257894 - L2 LINE L2 0 3313 3188 2070 142 0 0 chr3 155780189 155780485 -62256673 - AluSx SINE Alu -14 298 3 459 253 183 20 chr3 155781073 155781098 -62256060 - MIR SINE MIR -14 248 228 1997 128 13 20 chr3 155781098 155781402 -62255756 - AluSx SINE Alu -10 302 1 459 253 183 20 chr3 155781402 155781578 -62255580 - MIR SINE MIR -34 228 14 226 167 0 0 chr3 155781635 155781677 -62255481 + MIR SINE MIR 78 119 -89 681 239 105 79 chr3 155783450 155783830 -62253328 - L2 LINE L2 -1 3312 2923 387 293 36 7 chr3 155783844 155783984 -62253174 - MER91A DNA MER1_type -33 163 20 1197 154 85 111 chr3 155784631 155784937 -62252221 - AluJb SINE Alu -4 298 1 780 130 84 8 chr3 155785813 155785978 -62251180 + AluSg/x SINE Alu 148 322 0 302 284 106 21 chr3 155787148 155787289 -62249869 + MIR SINE MIR 96 248 -14 200 225 14 84 chr3 155787307 155787378 -62249780 + L3 LINE CR1 1510 1575 -2 234 198 164 69 chr3 155787960 155788076 -62249082 - Charlie7 DNA MER1_type -17 2595 2469 2212 125 0 0 chr3 155788324 155788627 -62248531 + AluSx SINE Alu 1 303 -9 297 0 0 0 chr3 155788884 155788917 -62248241 + (TA)n Simple_repeat Simple_repeat 2 34 0 2171 134 0 0 chr3 155788917 155789215 -62247943 - AluSx SINE Alu -14 298 1 546 155 20 27 chr3 155789314 155789462 -62247696 + CT-rich Low_complexity Low_complexity 2 148 0 2212 54 61 17 chr3 155791247 155791541 -62245617 - AluSc SINE Alu -2 307 1 300 70 0 0 chr3 155792120 155792163 -62244995 + (CA)n Simple_repeat Simple_repeat 2 44 0 186 104 42 21 chr3 155792718 155792766 -62244392 + (CCG)n Simple_repeat Simple_repeat 3 51 0 21 0 0 0 chr3 155792767 155792788 -62244370 + GC_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr3 155792969 155793011 -62244147 + GC_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr3 155797145 155797168 -62239990 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chr3 155800281 155800316 -62236842 + AT_rich Low_complexity Low_complexity 1 35 0 240 59 0 0 chr3 155800911 155800945 -62236213 + (T)n Simple_repeat Simple_repeat 1 34 0 238 154 0 0 chr3 155802665 155802704 -62234454 - MLT1K LTR MaLR -548 40 2 380 280 63 48 chr3 155803440 155803629 -62233529 + LTR33A LTR ERVL 1 192 -331 329 250 55 55 chr3 155803752 155803880 -62233278 + MLT1K LTR MaLR 454 581 -7 274 333 55 35 chr3 155804142 155804487 -62232671 + L2 LINE L2 1563 1914 -1400 246 358 32 0 chr3 155804750 155804873 -62232285 + LTR67 LTR ERVL 431 557 0 762 154 16 0 chr3 155805182 155805305 -62231853 + AluJo SINE Alu 10 134 -178 1338 176 28 20 chr3 155805839 155806094 -62231064 + L1MCa LINE L1 3 259 -6167 * 2658 150 52 6 chr3 155806092 155806593 -62230565 + L1MCa LINE L1 776 1299 -5127 210 197 30 0 chr3 155807260 155807326 -62229832 + T-rich Low_complexity Low_complexity 2 69 0 2498 65 3 7 chr3 155807569 155807875 -62229283 + AluSp SINE Alu 1 305 -8 306 0 0 0 chr3 155808514 155808548 -62228610 + (CA)n Simple_repeat Simple_repeat 1 34 0 271 286 69 16 chr3 155809088 155809225 -62227933 + MIR SINE MIR 26 169 -59 4105 83 2 14 chr3 155809231 155809784 -62227374 + MER41A LTR ERV1 1 546 -8 826 152 0 8 chr3 155809899 155810024 -62227134 - FLAM_C SINE Alu -19 124 1 339 167 39 13 chr3 155810107 155810185 -62226973 - Charlie5 DNA MER1_type 0 2624 2545 261 148 82 0 chr3 155810354 155810415 -62226743 - Charlie5 DNA MER1_type -80 2532 2467 4478 151 78 4 chr3 155810494 155811263 -62225895 + LTR1B LTR ERV1 1 826 0 440 177 177 9 chr3 155811359 155811472 -62225686 + FLAM_A SINE Alu 2 133 0 314 229 0 14 chr3 155811637 155811707 -62225451 + L2 LINE L2 3204 3272 0 31 26 0 0 chr3 155812472 155812510 -62224648 + AT_rich Low_complexity Low_complexity 1 38 0 338 301 104 18 chr3 155812779 155812942 -62224216 - MER5B DNA MER1_type -1 177 1 905 167 11 65 chr3 155812966 155813077 -62224081 + MER69A DNA AcHobo 2 101 -2425 2393 93 0 6 chr3 155813077 155813390 -62223768 - AluY SINE Alu 0 311 1 905 167 11 65 chr3 155813390 155813464 -62223694 + MER69A DNA AcHobo 101 177 0 1891 184 28 0 chr3 155813482 155813809 -62223349 + MER58B DNA MER1_type 6 341 0 2004 101 11 11 chr3 155817526 155817803 -62219355 - AluSq SINE Alu -36 277 1 2505 70 0 3 chr3 155818266 155818567 -62218591 - AluSp SINE Alu -13 300 1 189 74 0 0 chr3 155818727 155818754 -62218404 + (TAAAAA)n Simple_repeat Simple_repeat 5 31 0 709 234 145 9 chr3 155818767 155818981 -62218177 - MLT1K LTR MaLR 0 588 346 245 266 25 13 chr3 155819179 155819258 -62217900 + L1MEd LINE L1 3 82 -6037 2352 103 0 0 chr3 155819278 155819580 -62217578 + AluSx SINE Alu 1 302 -10 3427 94 8 17 chr3 155820321 155820790 -62216368 - MER1A DNA MER1_type -8 521 57 317 240 87 10 chr3 155820897 155821001 -62216157 - LTR67 LTR ERVL -10 547 436 314 259 0 69 chr3 155821357 155821473 -62215685 - L2 LINE L2 -85 3228 3121 658 289 51 5 chr3 155822370 155822567 -62214591 - L2 LINE L2 -246 3067 2862 246 281 53 35 chr3 155823231 155823345 -62213813 + L2 LINE L2 3194 3309 -4 282 29 0 0 chr3 155823346 155823381 -62213777 + (CA)n Simple_repeat Simple_repeat 1 35 0 371 235 230 25 chr3 155823541 155823745 -62213413 - MIR SINE MIR -1 261 16 2239 106 13 0 chr3 155824471 155824772 -62212386 + AluSx SINE Alu 1 305 -7 2735 212 92 73 chr3 155825994 155826989 -62210169 + MER97c DNA MER1_type? 48 1060 -30 268 329 63 19 chr3 155827839 155827997 -62209161 - MIR3 SINE MIR -32 176 12 703 254 112 13 chr3 155828260 155828484 -62208674 - MIR SINE MIR -13 249 4 2035 206 16 3 chr3 155828696 155829075 -62208083 + MLT1B LTR MaLR 3 386 -4 930 298 137 12 chr3 155829277 155829767 -62207391 - HAL1 LINE L1 -1956 551 1 288 159 0 63 chr3 155830144 155830207 -62206951 + L2 LINE L2 3214 3272 0 618 340 18 50 chr3 155830269 155830548 -62206610 - L2 LINE L2 0 3272 3003 525 152 38 0 chr3 155830558 155830637 -62206521 + L1MC1 LINE L1 28 109 -6317 1226 123 0 6 chr3 155830637 155830808 -62206350 + AluSg/x SINE Alu 131 300 -12 11541 134 102 33 chr3 155830812 155831758 -62205400 + L1MC1 LINE L1 101 981 -5445 1907 142 14 0 chr3 155831758 155832039 -62205119 + AluJb SINE Alu 1 285 -27 11541 134 102 33 chr3 155832039 155833307 -62203851 + L1MC1 LINE L1 981 2467 -3959 1470 200 29 36 chr3 155833311 155833591 -62203567 + AluJo SINE Alu 5 282 -30 11736 213 30 28 chr3 155833612 155833835 -62203323 + L1MC1 LINE L1 2452 2673 -3940 2083 120 0 13 chr3 155833835 155834134 -62203024 + AluJb SINE Alu 1 295 -17 11736 213 30 28 chr3 155834134 155834522 -62202636 + L1MC1 LINE L1 2673 3059 -3554 2232 109 7 0 chr3 155834522 155834824 -62202334 + AluSx SINE Alu 1 304 -8 11736 213 30 28 chr3 155834824 155834958 -62202200 + L1MC1 LINE L1 3059 3191 -3422 1786 160 65 0 chr3 155834958 155835251 -62201907 + AluSq SINE Alu 1 312 -1 11736 213 30 28 chr3 155835251 155835499 -62201659 + L1MC1 LINE L1 3191 3437 -3176 2265 82 31 0 chr3 155835499 155835791 -62201367 + AluY SINE Alu 1 301 -10 11736 213 30 28 chr3 155835791 155836353 -62200805 + L1MC1 LINE L1 3437 3996 -2617 2476 93 3 0 chr3 155836353 155836665 -62200493 + AluSq SINE Alu 1 313 0 11736 213 30 28 chr3 155836665 155836841 -62200317 + L1MC1 LINE L1 3996 4170 -2443 968 70 86 0 chr3 155836841 155836969 -62200189 + MER85 DNA T2_type 1 139 0 11736 213 30 28 chr3 155836969 155838956 -62198202 + L1MC1 LINE L1 4170 6183 -430 2122 112 3 3 chr3 155838959 155839253 -62197905 + AluSx SINE Alu 1 294 -18 180 0 0 0 chr3 155839253 155839273 -62197885 + (TTAAA)n Simple_repeat Simple_repeat 2 21 0 316 299 57 66 chr3 155839296 155839546 -62197612 - L2 LINE L2 -287 2985 2746 522 309 236 25 chr3 155839581 155840498 -62196660 - L2 LINE L2 -494 2820 1711 2374 115 50 19 chr3 155840565 155840929 -62196229 + THE1C LTR MaLR 1 375 0 1957 151 0 13 chr3 155840929 155841240 -62195918 + AluJb SINE Alu 3 309 -3 2236 166 34 6 chr3 155841331 155841686 -62195472 + MLT1A1 LTR MaLR 1 365 0 222 267 53 69 chr3 155841686 155841817 -62195341 + L2 LINE L2 2840 2968 -304 1312 189 41 47 chr3 155842141 155842485 -62194673 + L1MA9 LINE L1 5933 6274 -38 686 236 47 31 chr3 155842656 155842847 -62194311 - MIR SINE MIR -67 195 2 330 357 16 8 chr3 155844336 155844462 -62192696 + MIR SINE MIR 20 146 -116 288 149 64 0 chr3 155844470 155844517 -62192641 - LTR50 LTR ERVL 0 795 746 862 227 143 4 chr3 155844697 155844948 -62192210 - LTR50 LTR ERVL -509 286 1 264 336 115 0 chr3 155844953 155845066 -62192092 - MIR SINE MIR -12 250 125 712 303 142 11 chr3 155845857 155846230 -62190928 - LTR16A LTR ERVL -13 437 16 260 235 0 0 chr3 155846248 155846299 -62190859 - L2 LINE L2 -1 3271 3221 789 189 0 0 chr3 155846300 155846427 -62190731 + FLAM_C SINE Alu 1 127 -6 444 253 103 0 chr3 155846531 155846677 -62190481 + MIR SINE MIR 100 260 -2 963 302 115 30 chr3 155847823 155848363 -62188795 + MLT1K LTR MaLR 3 588 0 3328 122 101 29 chr3 155848623 155848814 -62188344 + MER51A LTR ERV1 2 178 -456 2243 84 10 17 chr3 155848814 155849111 -62188047 - AluSx SINE Alu -17 295 1 3328 122 101 29 chr3 155849111 155849501 -62187657 + MER51A LTR ERV1 178 625 -9 4292 127 26 17 chr3 155849661 155850352 -62186806 - MER50 LTR ERV1 -37 697 1 364 314 98 73 chr3 155850820 155851260 -62185898 - L2 LINE L2 0 3313 2863 374 301 139 33 chr3 155851312 155851614 -62185544 - MLT1K LTR MaLR -161 427 94 1141 162 40 31 chr3 155852063 155852074 -62185084 - L1ME LINE L1 -353 5813 5804 1973 128 3 20 chr3 155852074 155852371 -62184787 - AluSx SINE Alu -20 292 1 1141 162 40 31 chr3 155852371 155852587 -62184571 - L1ME LINE L1 -362 5804 5584 189 289 19 0 chr3 155852638 155852690 -62184468 + MIR SINE MIR 111 163 -99 717 295 173 9 chr3 155853455 155853784 -62183374 + L2 LINE L2 2931 3313 0 2442 52 0 0 chr3 155854054 155854345 -62182813 - AluY SINE Alu -20 291 1 2139 142 0 0 chr3 155854782 155855093 -62182065 - AluSx SINE Alu -1 311 1 438 107 62 107 chr3 155855423 155855535 -62181623 + MER3 DNA MER1_type 78 184 -25 2346 57 3 14 chr3 155855672 155855969 -62181189 - AluY SINE Alu -17 294 1 225 0 0 0 chr3 155856063 155856088 -62181070 + (TAGA)n Simple_repeat Simple_repeat 2 26 0 2099 90 43 3 chr3 155856091 155856468 -62180690 - AluSp SINE Alu 0 389 1 1898 158 0 16 chr3 155857000 155857310 -62179848 - AluJo SINE Alu -7 305 1 1850 144 10 42 chr3 155857360 155857491 -62179667 + AluJb SINE Alu 1 135 -177 234 0 0 0 chr3 155857491 155857517 -62179641 + (TAA)n Simple_repeat Simple_repeat 2 27 0 2250 108 0 0 chr3 155857527 155857822 -62179336 + AluSx SINE Alu 1 295 -17 1850 144 10 42 chr3 155857822 155857985 -62179173 + AluJb SINE Alu 144 296 -16 208 273 34 23 chr3 155858000 155858088 -62179070 + MIR SINE MIR 119 207 -55 1568 170 3 14 chr3 155858986 155859280 -62177878 - AluY SINE Alu -20 291 1 901 189 0 20 chr3 155859455 155859608 -62177550 + FRAM SINE Alu 1 150 -16 23 0 0 0 chr3 155859682 155859705 -62177453 + AT_rich Low_complexity Low_complexity 1 23 0 1442 142 34 88 chr3 155859853 155860149 -62177009 + AluJo SINE Alu 1 280 -32 273 57 0 0 chr3 155860149 155860184 -62176974 + (ATG)n Simple_repeat Simple_repeat 1 35 0 2094 166 48 0 chr3 155860419 155860751 -62176407 + MER7A DNA MER2_type 1 346 0 221 336 48 35 chr3 155860813 155860983 -62176175 - MIR SINE MIR -55 207 37 335 303 82 25 chr3 155861022 155861144 -62176014 - L2 LINE L2 -8 3264 3136 2462 56 0 7 chr3 155862204 155862507 -62174651 - AluY SINE Alu -10 301 1 1644 135 39 4 chr3 155863336 155863595 -62173563 - AluSx SINE Alu -18 294 27 189 350 62 0 chr3 155864260 155864340 -62172818 - L2 LINE L2 0 3313 3229 527 278 100 43 chr3 155864470 155864700 -62172458 + MIR SINE MIR 13 255 -7 225 294 20 0 chr3 155865198 155865249 -62171909 + MIR SINE MIR 19 70 -192 1004 239 142 57 chr3 155865252 155865746 -62171412 + MLT1F LTR MaLR 1 536 -6 931 205 22 0 chr3 155865750 155865935 -62171223 + MIR SINE MIR 71 259 -3 342 240 132 23 chr3 155865928 155866057 -62171101 - L2 LINE L2 0 3313 3171 * 233 284 21 32 chr3 155866057 155866152 -62171006 - L2 LINE L2 -250 3063 2970 650 169 209 17 chr3 155866623 155866800 -62170358 - L1M3 LINE L1 -404 5779 5569 248 370 239 0 chr3 155867369 155867507 -62169651 + L2 LINE L2 3102 3272 0 1816 144 73 57 chr3 155867620 155867827 -62169331 - THE1C LTR MaLR 0 375 158 2340 104 0 0 chr3 155867827 155868124 -62169034 + AluSc SINE Alu 1 297 -12 1816 144 73 57 chr3 155868124 155868285 -62168873 - THE1C LTR MaLR -217 158 1 2297 101 3 3 chr3 155868783 155869090 -62168068 - AluSq SINE Alu -6 307 1 307 202 164 29 chr3 155869612 155869716 -62167442 - L2 LINE L2 0 3313 3196 * 323 240 120 24 chr3 155869713 155869838 -62167320 - L2 LINE L2 -394 2920 2784 629 291 105 22 chr3 155869852 155870266 -62166892 - LTR33 LTR ERVL -2 519 1 277 111 44 0 chr3 155870277 155870322 -62166836 - MLT2C1 LTR ERVL -8 507 461 180 158 0 0 chr3 155870323 155870361 -62166797 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 1948 131 31 42 chr3 155870408 155870766 -62166392 - MLT2C1 LTR ERVL -40 424 4 1499 253 49 14 chr3 155870789 155871235 -62165923 - L2 LINE L2 -565 2749 2288 180 0 0 0 chr3 155871475 155871495 -62165663 + (A)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr3 155872184 155872205 -62164953 + AT_rich Low_complexity Low_complexity 1 21 0 4572 126 74 21 chr3 155872223 155872890 -62164268 - MER4D LTR ERV1 0 903 190 2604 50 0 0 chr3 155872890 155873192 -62163966 - AluY SINE Alu -9 302 1 4572 126 74 21 chr3 155873192 155873279 -62163879 - MER4D LTR ERV1 -713 190 109 1826 187 107 61 chr3 155873288 155873812 -62163346 - LTR10A LTR ERV1 -61 548 1 898 81 16 0 chr3 155873812 155873926 -62163232 - MER4B LTR ERV1 -494 116 1 266 349 57 28 chr3 155873987 155874093 -62163065 + L2 LINE L2 3150 3258 -14 1368 199 167 24 chr3 155874369 155874868 -62162290 - L1ME LINE L1 -551 5613 5187 2400 183 91 68 chr3 155874868 155875498 -62161660 - LTR9B LTR ERV1 0 644 1 1368 199 167 24 chr3 155875498 155875645 -62161513 - L1ME LINE L1 -977 5187 5062 3013 171 14 16 chr3 155875645 155876161 -62160997 - MLT2B2 LTR ERVL 0 515 1 1368 199 167 24 chr3 155876161 155876254 -62160904 - L1ME LINE L1 -1102 5062 4785 4303 180 45 11 chr3 155876867 155877705 -62159453 + L1MB7 LINE L1 5306 6172 -12 22 35 0 0 chr3 155878355 155878384 -62158774 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr3 155879083 155879106 -62158052 + (T)n Simple_repeat Simple_repeat 1 23 0 494 300 74 16 chr3 155879166 155879423 -62157735 + L1ME LINE L1 5549 5820 -301 1521 240 120 55 chr3 155879684 155881495 -62155663 + HAL1 LINE L1 61 1753 -754 1856 108 4 0 chr3 155881495 155881745 -62155413 + AluSq SINE Alu 1 251 -62 239 0 32 0 chr3 155881746 155881777 -62155381 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1521 240 120 55 chr3 155881777 155881892 -62155266 + HAL1 LINE L1 1752 2174 -333 313 293 6 48 chr3 155881913 155882080 -62155078 + HAL1 LINE L1 2265 2424 -83 2000 106 57 27 chr3 155882355 155882656 -62154502 + AluSg SINE Alu 1 310 0 2216 132 0 0 chr3 155882840 155883144 -62154014 + AluSx SINE Alu 1 304 -8 276 30 0 0 chr3 155883448 155883481 -62153677 + (CA)n Simple_repeat Simple_repeat 2 34 0 271 261 78 85 chr3 155884110 155884263 -62152895 - L2 LINE L2 -223 3049 2898 296 356 149 5 chr3 155885959 155886147 -62151011 - L3 LINE CR1 -437 1140 926 1005 232 130 53 chr3 155886233 155886647 -62150511 - MLT1J2 LTR MaLR -4 446 1 245 241 161 18 chr3 155886667 155886801 -62150357 + MIR SINE MIR 25 181 -74 540 295 41 29 chr3 155887017 155887261 -62149897 - L2 LINE L2 -231 3082 2836 697 176 26 52 chr3 155887279 155887432 -62149726 + MIR SINE MIR 103 251 -11 386 308 23 0 chr3 155887824 155887954 -62149204 + MIR SINE MIR 119 251 -11 387 308 98 92 chr3 155888253 155888805 -62148353 + LTR67 LTR ERVL 3 557 0 2091 130 0 0 chr3 155888915 155889208 -62147950 - AluSx SINE Alu -17 295 3 2189 113 113 0 chr3 155889697 155890032 -62147126 + THE1C LTR MaLR 1 373 -2 2249 92 0 7 chr3 155890839 155891143 -62146015 - AluSg SINE Alu -4 306 5 304 270 181 80 chr3 155892409 155892746 -62144412 + L1M2 LINE L1 680 1050 -5799 498 267 29 47 chr3 155894462 155894634 -62142524 - MIR SINE MIR -21 241 73 212 200 100 17 chr3 155895293 155895353 -62141805 + MIR SINE MIR 161 225 -37 * 873 259 176 6 chr3 155895349 155895685 -62141473 - L2 LINE L2 -381 2933 2541 700 173 135 19 chr3 155896333 155896489 -62140669 - MER3 DNA MER1_type -82 127 1 184 219 0 0 chr3 155896620 155896652 -62140506 - MIR SINE MIR -140 68 37 2038 95 4 0 chr3 155897628 155897890 -62139268 + AluSq SINE Alu 36 298 -15 1948 149 43 69 chr3 155898686 155898834 -62138324 + MLT1A1 LTR MaLR 1 151 -214 1649 164 3 40 chr3 155898834 155899132 -62138026 + AluJb SINE Alu 1 287 -25 1948 149 43 69 chr3 155899132 155899358 -62137800 + MLT1A1 LTR MaLR 151 365 0 180 0 0 0 chr3 155899414 155899434 -62137724 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1059 289 25 74 chr3 155899718 155900206 -62136952 + LTR16B LTR ERVL 1 464 0 329 330 30 10 chr3 155900260 155900360 -62136798 + L2 LINE L2 3166 3267 -5 205 156 0 0 chr3 155900360 155900392 -62136766 + GA-rich Low_complexity Low_complexity 1 32 0 254 288 0 0 chr3 155901361 155901427 -62135731 + (TA)n Simple_repeat Simple_repeat 2 67 0 373 294 62 6 chr3 155901938 155902098 -62135060 + L1ME4a LINE L1 5950 6118 -3 2482 70 0 0 chr3 155902573 155902873 -62134285 + AluY SINE Alu 1 300 -11 1644 135 39 4 chr3 155903078 155903337 -62133821 - AluSx SINE Alu -18 294 27 189 350 62 0 chr3 155904002 155904082 -62133076 - L2 LINE L2 0 3313 3229 527 278 100 43 chr3 155904212 155904442 -62132716 + MIR SINE MIR 13 255 -7 225 294 20 0 chr3 155904940 155904991 -62132167 + MIR SINE MIR 19 70 -192 1032 240 139 57 chr3 155904994 155905489 -62131669 + MLT1F LTR MaLR 1 536 -6 931 205 22 0 chr3 155905493 155905678 -62131480 + MIR SINE MIR 71 259 -3 342 240 132 23 chr3 155905671 155905800 -62131358 - L2 LINE L2 0 3313 3171 * 202 261 54 33 chr3 155905800 155905892 -62131266 - L2 LINE L2 -250 3063 2970 650 169 209 17 chr3 155906362 155906539 -62130619 - L1M3 LINE L1 -404 5779 5569 248 370 239 0 chr3 155907108 155907246 -62129912 + L2 LINE L2 3102 3272 0 1816 144 73 57 chr3 155907359 155907566 -62129592 - THE1C LTR MaLR 0 375 158 2340 104 0 0 chr3 155907566 155907863 -62129295 + AluSc SINE Alu 1 297 -12 1816 144 73 57 chr3 155907863 155908024 -62129134 - THE1C LTR MaLR -217 158 1 2210 121 3 3 chr3 155908522 155908829 -62128329 - AluSq SINE Alu -6 307 1 274 254 51 0 chr3 155909314 155909373 -62127785 + MIR3 SINE MIR 116 177 -31 1971 114 88 0 chr3 155909410 155909683 -62127475 - AluSx SINE Alu -15 297 1 989 176 0 6 chr3 155910359 155910518 -62126640 + FAM SINE Alu 1 158 -17 2367 79 3 10 chr3 155910742 155911046 -62126112 - AluSp SINE Alu -11 302 1 2205 90 0 3 chr3 155911329 155911617 -62125541 - AluY SINE Alu -2 309 23 995 220 55 4 chr3 155912308 155912563 -62124595 + L1ME2 LINE L1 4443 4710 -1436 933 188 40 4 chr3 155912737 155912987 -62124171 - L1ME1 LINE L1 -6 6160 5816 2293 177 121 44 chr3 155912987 155913508 -62123650 + MLT2F LTR ERVL 1 561 -102 483 279 127 71 chr3 155915044 155915367 -62121791 - L2 LINE L2 -2 3270 2930 1698 183 10 3 chr3 155915458 155915747 -62121411 - AluJo SINE Alu -8 304 14 334 196 20 0 chr3 155915807 155915909 -62121249 + (TA)n Simple_repeat Simple_repeat 1 104 0 234 0 0 0 chr3 155915909 155915935 -62121223 + (CA)n Simple_repeat Simple_repeat 1 26 0 25 0 0 0 chr3 155916160 155916185 -62120973 + AT_rich Low_complexity Low_complexity 1 25 0 3554 238 182 35 chr3 155916769 155918233 -62118925 + L2 LINE L2 550 2228 -1086 2561 48 0 0 chr3 155919417 155919711 -62117447 - AluY SINE Alu -17 294 1 1713 152 21 10 chr3 155920749 155921039 -62116119 + AluJb SINE Alu 3 295 -17 2191 262 82 50 chr3 155921206 155922084 -62115074 + L1ME LINE L1 279 1127 -5134 2172 116 3 7 chr3 155922084 155922394 -62114764 + AluSx SINE Alu 1 309 -3 2191 262 82 50 chr3 155922394 155922600 -62114558 + L1ME LINE L1 1127 1325 -4936 2208 103 0 3 chr3 155922600 155922892 -62114266 - AluSq SINE Alu -22 291 1 2191 262 82 50 chr3 155922892 155923682 -62113476 + L1ME LINE L1 1325 2265 -3996 2071 208 97 25 chr3 155923670 155924485 -62112673 + L1ME2 LINE L1 5121 6145 -19 * 415 227 50 8 chr3 155924539 155924658 -62112500 + L1MC5 LINE L1 7790 7913 -48 536 249 157 44 chr3 155924663 155925052 -62112106 + HAL1b LINE L1 915 1347 -1 187 31 62 0 chr3 155925071 155925103 -62112055 + (TA)n Simple_repeat Simple_repeat 2 35 0 2367 87 0 3 chr3 155925830 155926129 -62111029 - AluSp SINE Alu -15 298 1 2389 90 0 0 chr3 155927490 155927791 -62109367 - AluY SINE Alu -10 301 1 1296 110 10 127 chr3 155928760 155928972 -62108186 - L1MA9 LINE L1 0 6312 6142 2319 104 0 0 chr3 155928972 155929269 -62107889 + AluSq SINE Alu 1 297 -16 1296 110 10 127 chr3 155929269 155929348 -62107810 - L1MA9 LINE L1 -170 6142 6055 1931 141 122 8 chr3 155929949 155930319 -62106839 - MSTA LTR MaLR -11 417 6 324 173 0 0 chr3 155930746 155930798 -62106360 + MIR SINE MIR 64 115 -147 1964 195 109 7 chr3 155931246 155931677 -62105481 - MLT1D LTR MaLR -8 497 23 723 296 82 45 chr3 155931951 155932512 -62104646 + L1ME3A LINE L1 5 586 -5533 1677 159 20 20 chr3 155932644 155932939 -62104219 + AluJo SINE Alu 4 298 -14 793 286 49 40 chr3 155933017 155933572 -62103586 + L1ME3A LINE L1 2130 2689 -3440 582 256 110 32 chr3 155933691 155933972 -62103186 + L1ME3A LINE L1 3560 3862 -2267 729 286 101 35 chr3 155934078 155934888 -62102270 + L1ME3A LINE L1 4379 5373 -756 404 262 194 25 chr3 155934914 155935102 -62102056 + L1ME3A LINE L1 5657 5894 -259 1726 161 33 10 chr3 155935102 155935407 -62101751 + AluSx SINE Alu 1 312 0 404 262 194 25 chr3 155935407 155935455 -62101703 + L1ME3A LINE L1 5894 5933 -220 309 281 46 52 chr3 155935991 155936144 -62101014 - L2 LINE L2 -205 3067 2916 248 308 82 6 chr3 155936302 155936484 -62100674 - L2 LINE L2 -661 2653 2458 3047 110 23 21 chr3 155937060 155937487 -62099671 - MSTC LTR MaLR 0 428 1 720 245 116 23 chr3 155938374 155938590 -62098568 + MIR SINE MIR 25 260 -2 234 0 0 0 chr3 155939330 155939356 -62097802 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 693 183 141 0 chr3 155940124 155940266 -62096892 + MER3 DNA MER1_type 41 202 -7 468 356 172 2 chr3 155940372 155940855 -62096303 - L2 LINE L2 -524 2790 2226 590 344 140 20 chr3 155941531 155942277 -62094881 - L2 LINE L2 -1078 2236 1374 2427 66 0 10 chr3 155942277 155942578 -62094580 + AluY SINE Alu 1 298 -13 590 344 140 20 chr3 155942578 155942683 -62094475 - L2 LINE L2 -1940 1374 1283 192 341 22 14 chr3 155942785 155942923 -62094235 - L2 LINE L2 -2230 1084 946 1933 113 44 7 chr3 155943656 155943957 -62093201 + AluSx SINE Alu 1 311 0 1020 215 48 0 chr3 155944153 155944362 -62092796 - MER20 DNA MER1_type 0 219 1 275 247 55 88 chr3 155946226 155946368 -62090790 + MER20B DNA MER1_type 1 137 -646 2301 107 7 0 chr3 155946368 155946677 -62090481 + AluSp SINE Alu 1 311 -2 275 247 55 88 chr3 155946677 155946716 -62090442 + MER20B DNA MER1_type 137 176 -607 285 323 27 70 chr3 155947972 155948158 -62089000 - L2 LINE L2 -962 2352 2175 969 152 0 0 chr3 155948344 155948476 -62088682 + FLAM_C SINE Alu 2 133 0 237 65 0 0 chr3 155948604 155948635 -62088523 + (GA)n Simple_repeat Simple_repeat 2 32 0 1704 141 14 14 chr3 155948667 155948944 -62088214 + AluJo SINE Alu 29 305 -7 831 170 0 22 chr3 155949840 155949975 -62087183 + FLAM_A SINE Alu 2 133 0 331 309 73 34 chr3 155950909 155951087 -62086071 - MIR3 SINE MIR -7 201 17 1936 136 52 112 chr3 155952294 155952713 -62084445 + MSTD LTR MaLR 3 396 0 261 306 0 0 chr3 155952725 155952787 -62084371 + MIR3 SINE MIR 114 175 -33 23 0 0 0 chr3 155953293 155953316 -62083842 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr3 155953474 155953501 -62083657 + AT_rich Low_complexity Low_complexity 1 27 0 552 286 42 35 chr3 155953549 155953878 -62083280 + L1MEc LINE L1 2166 2462 -3753 935 298 97 13 chr3 155953886 155954647 -62082511 + L1MEc LINE L1 2499 3323 -2892 1028 123 0 0 chr3 155954648 155954786 -62082372 - AluSq/x SINE Alu -175 138 1 1075 138 0 13 chr3 155955456 155955636 -62081522 + AluSg/x SINE Alu 129 306 0 2204 133 0 0 chr3 155956858 155957158 -62080000 + AluSx SINE Alu 1 300 -12 2458 79 0 3 chr3 155957377 155957681 -62079477 - AluSq SINE Alu -10 303 1 211 352 0 33 chr3 155958306 155958397 -62078761 - L2 LINE L2 0 3272 3185 1844 145 10 34 chr3 155958467 155958763 -62078395 + AluJo SINE Alu 1 289 -23 1970 127 7 10 chr3 155959456 155959755 -62077403 + AluJb SINE Alu 1 298 -14 186 43 0 0 chr3 155960317 155960340 -62076818 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 719 251 103 8 chr3 155961137 155961380 -62075778 - MER102b DNA MER1_type -20 321 56 719 168 0 34 chr3 155961495 155961614 -62075544 + FLAM_A SINE Alu 1 115 -18 2181 125 0 19 chr3 155961624 155961943 -62075215 - AluSq SINE Alu 0 313 1 183 184 0 0 chr3 155961958 155961996 -62075162 + A-rich Low_complexity Low_complexity 2 39 0 1218 141 0 0 chr3 155962727 155962911 -62074247 + AluSg/x SINE Alu 125 308 -2 2203 108 0 7 chr3 155963469 155963766 -62073392 - AluSx SINE Alu -17 295 1 1041 152 25 0 chr3 155963766 155963924 -62073234 - FRAM SINE Alu -12 164 3 288 294 59 44 chr3 155964961 155965097 -62072061 - L2 LINE L2 -5 3308 3171 343 243 37 9 chr3 155965123 155965230 -62071928 - MER117 DNA MER1_type -41 156 47 1827 109 0 4 chr3 155965379 155965627 -62071531 + AluSg SINE Alu 62 308 -2 750 245 160 0 chr3 155966887 155967099 -62070059 - MIR SINE MIR -2 260 15 22 56 0 0 chr3 155968017 155968053 -62069105 + AT_rich Low_complexity Low_complexity 1 36 0 2092 140 0 7 chr3 155968567 155968874 -62068284 + AluJo SINE Alu 1 305 -7 2256 113 7 0 chr3 155968992 155969294 -62067864 + AluSq SINE Alu 1 304 -9 1098 159 0 11 chr3 155970177 155970355 -62066803 + AluJb SINE Alu 51 224 -88 602 257 57 50 chr3 155970553 155970954 -62066204 + L1ME4a LINE L1 5535 5938 -183 576 100 56 0 chr3 155971801 155971961 -62065197 + (TA)n Simple_repeat Simple_repeat 1 169 0 1015 157 20 71 chr3 155971973 155972171 -62064987 - AluJo SINE Alu -44 268 81 2410 67 0 7 chr3 155972709 155973007 -62064151 + AluY SINE Alu 1 296 -15 1596 119 4 4 chr3 155973438 155973664 -62063494 - AluSg SINE Alu -23 287 62 268 0 0 0 chr3 155974529 155974562 -62062596 - L1MC3 LINE L1 -288 7497 7465 2545 182 37 25 chr3 155974618 155975212 -62061946 - L1MB7 LINE L1 -153 6031 5431 1796 156 4 88 chr3 155975228 155975348 -62061810 - L1MC3 LINE L1 -8 7777 7649 2257 71 14 0 chr3 155975348 155975629 -62061529 - AluSc SINE Alu -24 285 1 1796 156 4 88 chr3 155975629 155975963 -62061195 - L1MC3 LINE L1 -136 7649 7361 36 0 0 0 chr3 155976030 155976066 -62061092 + AT_rich Low_complexity Low_complexity 1 36 0 744 140 7 52 chr3 155976070 155976206 -62060952 - FLAM_C SINE Alu -2 131 2 316 275 21 22 chr3 155976563 155976685 -62060473 - MIR SINE MIR -80 128 1 22 35 0 0 chr3 155977048 155977077 -62060081 + AT_rich Low_complexity Low_complexity 1 29 0 294 278 98 84 chr3 155977262 155977597 -62059561 - MLT1J2 LTR MaLR 0 409 70 1870 112 0 0 chr3 155977934 155978185 -62058973 - AluSx SINE Alu -22 290 40 247 222 48 16 chr3 155978195 155978258 -62058900 - MIR SINE MIR -13 249 185 661 293 75 47 chr3 155978273 155978594 -62058564 - L3 LINE CR1 -354 1223 894 186 204 74 19 chr3 155978895 155978949 -62058209 - L2 LINE L2 -3 3269 3213 1690 211 15 0 chr3 155978988 155979324 -62057834 - MER58B DNA MER1_type 0 341 1 1830 191 0 0 chr3 155979395 155979677 -62057481 + AluJo SINE Alu 1 282 -30 670 303 60 24 chr3 155979829 155980080 -62057078 - MIR SINE MIR 0 262 3 696 209 0 8 chr3 155980661 155980795 -62056363 + FLAM_A SINE Alu 1 133 0 1893 140 24 7 chr3 155980830 155981122 -62056036 - AluSx SINE Alu -15 297 1 195 299 98 109 chr3 155981302 155981476 -62055682 + L2 LINE L2 2939 3110 -162 3395 212 21 81 chr3 155981530 155982560 -62054598 + LTR5 LTR ERVK 1 969 0 3296 134 62 7 chr3 155983031 155983648 -62053510 - Tigger3(Golem) DNA MER2_type -1 3028 2378 1153 67 13 4 chr3 155983648 155983887 -62053271 - L1PA11 LINE L1 -6 6168 5794 41 48 0 0 chr3 155984031 155984093 -62053065 + AT_rich Low_complexity Low_complexity 1 62 0 364 273 79 88 chr3 155984664 155984994 -62052164 - L1M2 LINE L1 -5647 1202 876 206 225 0 0 chr3 155985056 155985096 -62052062 + CT-rich Low_complexity Low_complexity 2 41 0 553 296 124 26 chr3 155987282 155987508 -62049650 - MIR SINE MIR -10 252 5 1239 124 54 5 chr3 155988701 155988886 -62048272 - AluSg SINE Alu -116 194 1 297 177 32 0 chr3 155989213 155989275 -62047883 + L1MB4 LINE L1 5733 5796 -366 2301 120 0 0 chr3 155989790 155990098 -62047060 + AluSx SINE Alu 1 308 -4 1134 181 52 42 chr3 155990099 155990480 -62046678 + L1MC5 LINE L1 7538 7922 -39 1639 68 36 0 chr3 155990692 155990911 -62046247 - MER30 DNA MER1_type 0 230 4 1245 159 26 0 chr3 155991405 155991632 -62045526 + L1MB4 LINE L1 5943 6175 -5 324 299 48 53 chr3 155991928 155992115 -62045043 + L2 LINE L2 2899 3084 -188 987 270 160 18 chr3 155992229 155992684 -62044474 + MLT1H1 LTR MaLR 36 555 0 282 224 40 26 chr3 155994183 155994259 -62042899 + L2 LINE L2 2199 2275 -1039 5941 43 12 8 chr3 155994261 155995105 -62042053 - L1PA3 LINE L1 -100 6055 5206 809 253 5 11 chr3 155996509 155996699 -62040459 + MER5A DNA MER1_type 1 189 0 189 0 0 0 chr3 155997271 155997292 -62039866 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1995 125 4 0 chr3 155997292 155997571 -62039587 - AluSx SINE Alu -32 280 1 324 265 20 31 chr3 155998241 155998339 -62038819 + MER5A DNA MER1_type 65 161 -28 2141 133 0 0 chr3 155998365 155998658 -62038500 + AluSx SINE Alu 1 293 -19 2483 218 48 36 chr3 155999034 155999652 -62037506 - MLT1E2 LTR MaLR 0 626 1 1770 256 82 69 chr3 155999944 156001094 -62036064 - L1MEc LINE L1 -4494 1902 738 * 3207 178 26 48 chr3 156001087 156001142 -62036016 - L1MB2 LINE L1 -1 6170 6115 207 0 0 0 chr3 156001142 156001165 -62035993 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2129 105 0 49 chr3 156001166 156001471 -62035687 - AluSq SINE Alu -23 290 1 3207 178 26 48 chr3 156001471 156001931 -62035227 - L1MB2 LINE L1 -56 6115 5673 2076 159 0 0 chr3 156001931 156002232 -62034926 + AluSx SINE Alu 1 301 -11 3207 178 26 48 chr3 156002232 156002504 -62034654 - L1MB2 LINE L1 -498 5673 5397 270 194 97 0 chr3 156002558 156002620 -62034538 + Tigger5 DNA MER2_type 2250 2317 -6 444 215 0 0 chr3 156002622 156002701 -62034457 - Tigger5 DNA MER2_type -2244 79 1 1684 205 47 16 chr3 156002704 156003129 -62034029 - L1MB2 LINE L1 -743 5403 4966 1132 145 0 6 chr3 156003139 156003311 -62033847 - AluJb SINE Alu -1 311 141 1940 137 48 3 chr3 156003321 156003613 -62033545 - AluSx SINE Alu -7 305 1 599 151 126 0 chr3 156003617 156003736 -62033422 + MER58C DNA MER1_type 82 215 0 1296 216 219 0 chr3 156004866 156005209 -62031949 + MER47B DNA MER2_type 1 418 0 1217 123 0 0 chr3 156005672 156005878 -62031280 + AluSp SINE Alu 131 313 0 414 311 108 9 chr3 156006389 156006611 -62030547 - MIR SINE MIR -1 261 18 22 0 0 0 chr3 156006871 156006893 -62030265 + AT_rich Low_complexity Low_complexity 1 22 0 2121 133 3 10 chr3 156007046 156007348 -62029810 - AluSq SINE Alu -13 300 1 23 33 0 0 chr3 156007466 156007496 -62029662 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 156007562 156007583 -62029575 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 156007658 156007681 -62029477 + AT_rich Low_complexity Low_complexity 1 23 0 1395 172 13 42 chr3 156007752 156008060 -62029098 + AluSx SINE Alu 3 301 -1 13068 183 25 38 chr3 156008223 156008584 -62028574 - L1PB1 LINE L1 -5 6862 6498 316 57 0 38 chr3 156008584 156008637 -62028521 + (TA)n Simple_repeat Simple_repeat 1 51 0 13068 183 25 38 chr3 156008637 156009088 -62028070 - L1PB1 LINE L1 -369 6498 6042 2264 100 3 0 chr3 156009088 156009387 -62027771 - AluSp SINE Alu -13 300 1 13068 183 25 38 chr3 156009387 156011642 -62025516 - L1PB1 LINE L1 -825 6042 3866 2505 65 0 7 chr3 156011642 156011950 -62025208 - AluY SINE Alu -5 306 1 13068 183 25 38 chr3 156011950 156013911 -62023247 - L1PB1 LINE L1 -3001 3866 1880 234 0 0 0 chr3 156013919 156013945 -62023213 + (TTG)n Simple_repeat Simple_repeat 2 27 0 841 154 0 0 chr3 156013952 156014075 -62023083 - AluSq/x SINE Alu -189 123 1 2777 122 9 2 chr3 156014090 156014549 -62022609 - L1PB1 LINE L1 -4992 1871 1410 444 19 0 0 chr3 156014556 156014609 -62022549 + (TG)n Simple_repeat Simple_repeat 2 54 0 2203 110 0 7 chr3 156014622 156014914 -62022244 - AluSc SINE Alu -19 290 1 2293 111 0 3 chr3 156014914 156015220 -62021938 - AluSg SINE Alu -5 305 1 1444 190 3 28 chr3 156015440 156015724 -62021434 - AluJo SINE Alu -35 277 1 1581 173 23 40 chr3 156016724 156016907 -62020251 - AluJo SINE Alu -16 296 118 2139 120 0 13 chr3 156016907 156017208 -62019950 + AluSx SINE Alu 1 297 -15 1581 173 23 40 chr3 156017208 156017325 -62019833 - AluJo SINE Alu -194 118 1 621 256 206 51 chr3 156017552 156017985 -62019173 + L2 LINE L2 2810 3309 -4 284 300 128 44 chr3 156020815 156020995 -62016163 - MIR SINE MIR -38 224 30 485 172 129 9 chr3 156021356 156021472 -62015686 + MER106B DNA MER1_type 899 1028 -31 544 280 41 53 chr3 156021623 156021866 -62015292 + MLT1L LTR MaLR 366 605 -10 2127 94 0 3 chr3 156022054 156022352 -62014806 - AluY SINE Alu -14 297 1 21 36 0 0 chr3 156022354 156022382 -62014776 + AT_rich Low_complexity Low_complexity 1 28 0 220 272 86 37 chr3 156022634 156022715 -62014443 - MER5A DNA MER1_type -67 122 38 2139 92 0 0 chr3 156023330 156023644 -62013514 + AluY SINE Alu 1 314 0 876 197 27 5 chr3 156023758 156023946 -62013212 - MIR SINE MIR -12 250 59 281 336 200 0 chr3 156024073 156024213 -62012945 + L2 LINE L2 3103 3270 -2 328 251 314 6 chr3 156024297 156024472 -62012686 + MIR SINE MIR 34 262 0 265 318 115 44 chr3 156024939 156025329 -62011829 + L2 LINE L2 2329 2746 -568 229 336 134 20 chr3 156026004 156026153 -62011005 + MIR3 SINE MIR 21 186 -22 2436 65 0 31 chr3 156026918 156027239 -62009919 + AluY SINE Alu 1 311 0 24 32 0 0 chr3 156027692 156027723 -62009435 + AT_rich Low_complexity Low_complexity 1 31 0 249 286 38 29 chr3 156028106 156028211 -62008947 - MIR SINE MIR -53 209 104 2399 78 3 3 chr3 156028280 156028586 -62008572 + AluSq SINE Alu 1 306 -7 198 283 79 79 chr3 156028881 156029058 -62008100 + L2 LINE L2 3119 3295 -18 1981 69 73 28 chr3 156030283 156030572 -62006586 - AluSq SINE Alu -11 302 1 2138 107 3 10 chr3 156033450 156033750 -62003408 + AluSx SINE Alu 1 298 -14 1804 278 17 30 chr3 156033901 156034427 -62002731 + L1MEd LINE L1 6 524 -5595 787 251 47 40 chr3 156034426 156034873 -62002285 + L1MEd LINE L1 786 1235 -4884 * 959 125 0 7 chr3 156034876 156035020 -62002138 + FLAM_C SINE Alu 1 143 0 189 223 21 128 chr3 156036026 156036120 -62001038 + L2 LINE L2 2871 2954 -359 27 29 0 0 chr3 156036494 156036528 -62000630 + AT_rich Low_complexity Low_complexity 1 34 0 284 143 22 44 chr3 156036970 156037061 -62000097 + CT-rich Low_complexity Low_complexity 1 89 0 22 0 0 0 chr3 156037359 156037381 -61999777 + AT_rich Low_complexity Low_complexity 1 22 0 273 57 0 0 chr3 156037706 156037741 -61999417 + (TATG)n Simple_repeat Simple_repeat 2 36 0 211 189 0 0 chr3 156038211 156038248 -61998910 + (TG)n Simple_repeat Simple_repeat 2 38 0 378 324 97 11 chr3 156038452 156038628 -61998530 - MIR SINE MIR -52 210 20 946 162 122 10 chr3 156038906 156039103 -61998055 + MER20 DNA MER1_type 1 219 0 202 247 169 0 chr3 156039218 156039295 -61997863 - MIR SINE MIR 0 262 173 2320 72 3 10 chr3 156039361 156039652 -61997506 - AluSp SINE Alu -24 289 1 777 185 62 0 chr3 156039652 156039798 -61997360 - MIR SINE MIR -101 161 7 318 357 36 18 chr3 156039928 156040208 -61996950 - L2 LINE L2 -457 2857 2573 1913 124 77 13 chr3 156040260 156040559 -61996599 + MER1B DNA MER1_type 22 339 0 23 33 0 0 chr3 156041569 156041599 -61995559 + AT_rich Low_complexity Low_complexity 1 30 0 2293 98 0 0 chr3 156042259 156042555 -61994603 + AluSx SINE Alu 1 296 -16 685 271 84 17 chr3 156044697 156044996 -61992162 + L1ME4a LINE L1 5563 5881 -240 245 264 0 96 chr3 156045032 156045157 -61992001 + L1ME4a LINE L1 5956 6068 -53 1844 126 4 0 chr3 156045776 156046045 -61991113 + AluSx SINE Alu 37 306 -6 251 289 13 40 chr3 156046047 156046123 -61991035 - L3 LINE CR1 -77 1500 1427 1420 184 3 20 chr3 156046123 156046416 -61990742 - AluSp SINE Alu -5 308 21 31 0 0 0 chr3 156046461 156046492 -61990666 + AT_rich Low_complexity Low_complexity 1 31 0 603 68 23 0 chr3 156047160 156047248 -61989910 + AluY SINE Alu 205 294 -17 307 193 127 73 chr3 156047581 156047731 -61989427 + L1ME4a LINE L1 5963 6120 -1 3294 116 68 16 chr3 156048616 156049185 -61987973 + Tigger3b DNA MER2_type 1 599 -632 4979 74 13 0 chr3 156049185 156050319 -61986839 + L1PA7 LINE L1 4711 5853 -301 194 317 98 24 chr3 156050748 156050871 -61986287 + L2 LINE L2 3109 3240 -32 257 239 64 28 chr3 156050893 156051002 -61986156 - L1ME4a LINE L1 -49 6072 5960 1743 116 0 0 chr3 156051415 156051648 -61985510 + AluSx SINE Alu 3 235 -77 180 0 0 0 chr3 156051657 156051677 -61985481 + (A)n Simple_repeat Simple_repeat 1 20 0 1678 186 33 17 chr3 156051743 156052044 -61985114 + AluJb SINE Alu 1 306 -6 820 33 0 50 chr3 156052357 156052477 -61984681 + L1PA4 LINE L1 6042 6155 0 191 328 53 49 chr3 156052645 156052889 -61984269 - L2 LINE L2 -2582 732 488 2229 106 0 7 chr3 156053072 156053373 -61983785 + AluSq SINE Alu 2 300 -13 2407 203 75 44 chr3 156053719 156054289 -61982869 - L1ME1 LINE L1 -43 6123 5527 2523 53 0 0 chr3 156054289 156054589 -61982569 - AluY SINE Alu -11 300 1 2407 203 75 44 chr3 156054589 156054698 -61982460 - L1ME1 LINE L1 -639 5527 5423 383 158 37 0 chr3 156054709 156054791 -61982367 - L1MB4 LINE L1 0 6180 6096 14803 165 37 53 chr3 156054826 156055246 -61981912 - L1MA5 LINE L1 -306 7413 6988 3771 51 33 8 chr3 156055246 156055755 -61981403 + L1PA8 LINE L1 5649 6170 -2 1783 84 40 30 chr3 156055757 156056054 -61981104 - L1MA2 LINE L1 -6 6298 5999 14803 165 37 53 chr3 156056054 156056606 -61980552 - L1MA5 LINE L1 -732 6987 6428 7076 51 9 29 chr3 156056606 156057808 -61979350 - L1PA5 LINE L1 0 6154 4962 1757 60 125 12 chr3 156057808 156058056 -61979102 - AluY SINE Alu -35 276 1 14803 165 37 53 chr3 156058056 156058750 -61978408 - L1MA5 LINE L1 -1290 6429 5725 207 0 0 0 chr3 156058750 156058773 -61978385 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 14803 165 37 53 chr3 156058773 156059964 -61977194 - L1MA5 LINE L1 -1994 5725 4516 2093 143 0 0 chr3 156059964 156060265 -61976893 - AluJb SINE Alu -11 301 1 14803 165 37 53 chr3 156060265 156060358 -61976800 - L1MA5 LINE L1 -3203 4516 4423 2216 103 10 0 chr3 156060358 156060658 -61976500 - AluSx SINE Alu -9 303 1 14803 165 37 53 chr3 156060658 156061826 -61975332 - L1MA5 LINE L1 -3296 4423 3343 371 98 0 0 chr3 156061838 156061889 -61975269 + Alu SINE Alu 243 293 -9 408 88 0 0 chr3 156061889 156061946 -61975212 + (TA)n Simple_repeat Simple_repeat 2 58 0 349 217 70 42 chr3 156061950 156062093 -61975065 - L1MA5 LINE L1 -4226 3339 3193 3027 230 21 18 chr3 156062094 156062934 -61974224 - L1MA5 LINE L1 -4324 3241 2399 * 3109 192 63 7 chr3 156062931 156064016 -61973142 + L1P4 LINE L1 4323 5531 -637 1523 208 40 29 chr3 156064013 156064090 -61973068 - L1M4 LINE L1 -1349 4797 4722 * 3332 45 34 27 chr3 156064090 156064324 -61972834 + MLT2A1 LTR ERVL 1 241 -203 1888 136 70 0 chr3 156064324 156064610 -61972548 - AluSx SINE Alu -6 306 1 3332 45 34 27 chr3 156064610 156064816 -61972342 + MLT2A1 LTR ERVL 241 444 0 1523 208 40 29 chr3 156064816 156065190 -61971968 - L1M4 LINE L1 -1424 4722 4341 451 216 94 34 chr3 156065221 156065473 -61971685 - L1MEc LINE L1 -805 6152 3589 201 114 45 0 chr3 156065495 156065539 -61971619 + (TA)n Simple_repeat Simple_repeat 2 47 0 261 243 43 0 chr3 156065540 156065610 -61971548 - L1MB8 LINE L1 -27 6151 6079 * 643 164 123 8 chr3 156065608 156065730 -61971428 - L1MB7 LINE L1 -136 6048 5913 415 211 24 32 chr3 156065726 156065975 -61971183 - L1MB7 LINE L1 -791 5393 5077 * 1015 236 98 3 chr3 156065979 156066720 -61970438 - L1MEc LINE L1 -3354 3603 2791 494 280 106 20 chr3 156066772 156067065 -61970093 - L1MEc LINE L1 -4452 2686 2369 645 208 7 7 chr3 156067067 156067216 -61969942 - L1MB8 LINE L1 -9 6169 6021 3207 201 56 54 chr3 156067216 156067296 -61969862 - L1MEc LINE L1 -3049 3908 3830 674 213 0 0 chr3 156067296 156067423 -61969735 - FLAM_C SINE Alu -6 127 1 3207 201 56 54 chr3 156067423 156068024 -61969134 - L1MEc LINE L1 -3127 3830 3242 2217 119 3 0 chr3 156068024 156068327 -61968831 - AluSx SINE Alu -8 304 1 3207 201 56 54 chr3 156068327 156068720 -61968438 - L1MEc LINE L1 -3715 3242 2851 2208 191 30 8 chr3 156068758 156069160 -61967998 - MSTB LTR MaLR -15 411 1 829 148 15 0 chr3 156069269 156069404 -61967754 - FLAM_C SINE Alu -5 138 2 278 227 0 15 chr3 156069407 156069473 -61967685 - L1MEc LINE L1 -4241 2718 2654 2154 259 26 6 chr3 156069739 156070381 -61966777 - L1MEc LINE L1 -4633 2326 1672 1485 193 28 111 chr3 156070381 156070445 -61966713 - MLT1B LTR MaLR 0 390 322 2028 106 39 7 chr3 156070445 156070727 -61966431 + AluSx SINE Alu 1 291 -21 1485 193 28 111 chr3 156070727 156071087 -61966071 - MLT1B LTR MaLR -68 322 1 330 120 0 0 chr3 156071087 156071147 -61966011 - L1M4 LINE L1 -4795 2083 1627 828 109 0 0 chr3 156071153 156071263 -61965895 - AluSg/x SINE Alu -21 291 182 671 196 13 6 chr3 156071288 156071446 -61965712 + L1M4b LINE L1 1465 1623 -5236 958 158 40 102 chr3 156071484 156071788 -61965370 - L1M4 LINE L1 -5382 1477 1193 280 173 37 25 chr3 156071786 156071867 -61965291 - L1M4 LINE L1 -5457 1402 1321 * 331 329 53 35 chr3 156072159 156072354 -61964804 - L1M4 LINE L1 -5603 1344 812 245 264 19 38 chr3 156072587 156072693 -61964465 - L1M4 LINE L1 -6737 122 19 324 256 61 68 chr3 156073239 156073287 -61963871 + L1MC/D LINE L1 5187 5234 -932 1891 132 7 0 chr3 156073287 156073559 -61963599 + AluSx SINE Alu 20 293 -19 324 256 61 68 chr3 156073559 156073838 -61963320 + L1MC/D LINE L1 5234 5526 -640 322 214 30 41 chr3 156073889 156074003 -61963155 + L1MC/D LINE L1 5644 5760 -424 36 70 0 0 chr3 156074273 156074344 -61962814 + AT_rich Low_complexity Low_complexity 1 71 0 2365 84 0 0 chr3 156074556 156074853 -61962305 + AluSc SINE Alu 3 299 -10 22 70 0 0 chr3 156074908 156074951 -61962207 + AT_rich Low_complexity Low_complexity 1 43 0 1515 176 45 0 chr3 156074963 156075230 -61961928 + AluJo SINE Alu 3 281 -31 26 74 0 0 chr3 156075455 156075509 -61961649 + AT_rich Low_complexity Low_complexity 1 54 0 286 367 54 7 chr3 156077064 156077211 -61959947 - MIR3 SINE MIR -1 207 54 1911 94 59 7 chr3 156077793 156078079 -61959079 - AluSx SINE Alu -11 301 1 338 311 41 8 chr3 156079000 156079122 -61958036 + MIR SINE MIR 1 126 -136 23 54 0 0 chr3 156079202 156079239 -61957919 + AT_rich Low_complexity Low_complexity 1 37 0 1314 181 48 221 chr3 156080359 156081024 -61956134 - MLT1G LTR MaLR 0 590 41 628 245 83 46 chr3 156081340 156081581 -61955577 + MER2 DNA MER2_type 95 344 -1 1079 215 84 8 chr3 156082246 156082483 -61954675 - MIR SINE MIR 0 262 8 2151 93 4 0 chr3 156083426 156083733 -61953425 - AluSg SINE Alu 0 308 1 1241 326 96 37 chr3 156086164 156087067 -61950091 - L2 LINE L2 -195 3077 2121 1119 224 90 59 chr3 156088179 156088740 -61948418 - L2 LINE L2 0 3313 2739 635 256 0 7 chr3 156088850 156088987 -61948171 - L2 LINE L2 -1047 2267 2132 418 321 0 0 chr3 156088989 156089123 -61948035 + (TG)n Simple_repeat Simple_repeat 1 134 0 375 335 37 43 chr3 156089721 156089909 -61947249 - MIR SINE MIR -26 236 50 21 57 0 0 chr3 156090157 156090192 -61946966 + AT_rich Low_complexity Low_complexity 1 35 0 640 192 15 15 chr3 156090600 156090730 -61946428 + MER94 DNA DNA 1 130 -4 26 30 0 0 chr3 156090923 156090956 -61946202 + AT_rich Low_complexity Low_complexity 1 33 0 33 43 0 0 chr3 156091004 156091051 -61946107 + AT_rich Low_complexity Low_complexity 1 47 0 203 361 19 77 chr3 156091816 156091971 -61945187 - MIR3 SINE MIR -21 187 42 548 218 113 0 chr3 156092321 156092454 -61944704 - MER103 DNA DNA -10 156 9 956 220 75 16 chr3 156092746 156093255 -61943903 + L1MEc LINE L1 36 724 -5672 1423 364 85 19 chr3 156093259 156094106 -61943052 + L1MEc LINE L1 878 1780 -4616 1372 180 16 16 chr3 156094315 156094571 -61942587 - MIR SINE MIR 0 262 7 591 174 139 0 chr3 156094959 156095074 -61942084 - Tigger1 DNA MER2_type -2287 131 1 337 235 25 12 chr3 156096005 156096086 -61941072 + MIR SINE MIR 171 252 -10 328 298 44 0 chr3 156096361 156096475 -61940683 - MER5A DNA MER1_type 0 189 71 218 248 159 18 chr3 156096385 156096498 -61940660 + MER5A DNA MER1_type 39 167 -22 * 247 223 196 34 chr3 156096787 156096935 -61940223 - L2 LINE L2 -209 3063 2892 1366 199 33 11 chr3 156097846 156098122 -61939036 + AluJo SINE Alu 1 282 -30 24 32 0 0 chr3 156098122 156098153 -61939005 + AT_rich Low_complexity Low_complexity 1 31 0 1961 139 20 7 chr3 156098957 156099259 -61937899 + AluSx SINE Alu 1 306 -6 391 117 17 0 chr3 156099530 156099590 -61937568 + U7 snRNA snRNA 2 62 -1 29 0 0 0 chr3 156099594 156099623 -61937535 + AT_rich Low_complexity Low_complexity 1 29 0 335 252 61 53 chr3 156099625 156099756 -61937402 - L1ME LINE L1 -373 5748 5614 411 253 170 0 chr3 156100934 156101055 -61936103 - MER20B DNA MER1_type -24 195 55 1380 273 58 15 chr3 156101315 156101953 -61935205 - L2 LINE L2 -29 3284 2617 439 266 72 0 chr3 156101956 156102095 -61935063 - L2 LINE L2 -525 2789 2641 25 51 0 0 chr3 156102600 156102639 -61934519 + AT_rich Low_complexity Low_complexity 1 39 0 342 299 43 26 chr3 156103029 156103146 -61934012 + L2 LINE L2 3193 3311 -2 1970 128 30 10 chr3 156103149 156103445 -61933713 + AluSx SINE Alu 1 302 -10 369 0 0 0 chr3 156103454 156103495 -61933663 + (CA)n Simple_repeat Simple_repeat 2 42 0 1715 196 54 5 chr3 156103719 156104087 -61933071 - MER58D DNA MER1_type 0 386 1 21 71 0 0 chr3 156105191 156105233 -61931925 + AT_rich Low_complexity Low_complexity 1 42 0 3923 154 28 48 chr3 156106258 156106369 -61930789 + MER44D DNA MER2_type 1 113 -2374 819 189 19 6 chr3 156106369 156106528 -61930630 - FRAM SINE Alu -4 162 2 3923 154 28 48 chr3 156106528 156107163 -61929995 + MER44D DNA MER2_type 113 604 -1 655 173 58 7 chr3 156107187 156107326 -61929832 + L1ME LINE L1 5675 5820 -346 291 146 49 163 chr3 156107326 156107449 -61929709 - MLT2F LTR ERVL 0 663 555 7210 35 6 4 chr3 156107576 156108491 -61928667 - L1P LINE L1 -888 5258 4343 1317 195 77 18 chr3 156108499 156108771 -61928387 - AluJo SINE Alu -14 288 1 729 206 230 14 chr3 156109106 156109315 -61927843 - MIR SINE MIR -7 255 2 1144 242 90 22 chr3 156110717 156111118 -61926040 + MER110A LTR ERV1 41 468 0 1907 103 3 67 chr3 156111722 156112072 -61925086 + AluSx SINE Alu 2 332 0 21 0 0 0 chr3 156115159 156115180 -61921978 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 156115300 156115323 -61921835 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr3 156115648 156115676 -61921482 + AT_rich Low_complexity Low_complexity 1 28 0 2069 105 7 0 chr3 156118450 156118762 -61918396 - AluSx SINE Alu 0 318 5 360 0 0 0 chr3 156119393 156119433 -61917725 + (TAA)n Simple_repeat Simple_repeat 2 41 0 468 295 111 19 chr3 156120201 156120515 -61916643 - L1MC4a LINE L1 -401 5765 5588 353 254 82 0 chr3 156121266 156121376 -61915782 + L1ME4a LINE L1 5311 5429 -2379 528 267 114 7 chr3 156121393 156121666 -61915492 + L1ME4a LINE L1 5526 5827 -294 2036 69 0 56 chr3 156121667 156121850 -61915308 + L1PA8 LINE L1 5886 6048 -124 2060 113 3 3 chr3 156121850 156122156 -61915002 + AluSg SINE Alu 1 306 0 2036 69 0 56 chr3 156122156 156122275 -61914883 + L1PA8 LINE L1 6048 6172 0 2284 64 4 4 chr3 156122990 156123294 -61913864 - AluY SINE Alu 0 304 1 2446 97 14 3 chr3 156123413 156123764 -61913394 + THE1A LTR MaLR 1 355 0 1153 129 134 5 chr3 156123963 156124172 -61912986 - MER46A DNA MER2_type 0 236 1 2109 109 3 0 chr3 156125199 156125530 -61911628 + AluSp SINE Alu 1 332 0 431 254 142 0 chr3 156125923 156126057 -61911101 + MIR SINE MIR 58 210 -52 3017 220 60 34 chr3 156126696 156128048 -61909110 - L1ME1 LINE L1 -9 6226 4824 1479 215 3 16 chr3 156128048 156128360 -61908798 + AluJo SINE Alu 1 308 -4 3017 220 60 34 chr3 156128360 156128616 -61908542 - L1ME1 LINE L1 -1411 4824 4576 1337 115 0 83 chr3 156128625 156128843 -61908315 - AluSc SINE Alu -22 287 88 1004 243 45 10 chr3 156128845 156129158 -61908000 - L1ME1 LINE L1 -4098 2298 1975 372 148 42 13 chr3 156129158 156129245 -61907913 + FRAM/FAM SINE Alu 6 83 -92 222 294 15 15 chr3 156129682 156129750 -61907408 + L2 LINE L2 3205 3272 0 1997 132 10 7 chr3 156130892 156131187 -61905971 + AluSx SINE Alu 1 296 -16 267 284 52 45 chr3 156132107 156132241 -61904917 - Charlie8 DNA MER1_type -2156 261 127 429 278 26 53 chr3 156132622 156132773 -61904385 + L2 LINE L2 2199 2345 -969 248 195 228 89 chr3 156132865 156132953 -61904205 - MIR SINE MIR -121 141 30 2370 87 0 0 chr3 156132953 156133253 -61903905 - AluY SINE Alu -11 300 1 248 195 228 89 chr3 156133253 156133287 -61903871 - MIR SINE MIR -232 30 2 1740 25 0 0 chr3 156133530 156133732 -61903426 + L1PA3 LINE L1 5951 6152 -3 474 214 175 0 chr3 156134101 156134204 -61902954 + FLAM_A SINE Alu 1 121 -12 22 35 0 0 chr3 156134204 156134233 -61902925 + AT_rich Low_complexity Low_complexity 1 29 0 814 183 16 60 chr3 156134348 156134599 -61902559 - AluSx SINE Alu -15 297 58 1700 162 10 20 chr3 156135143 156135439 -61901719 + AluSx SINE Alu 1 293 -19 2158 110 0 13 chr3 156135443 156135752 -61901406 + AluSc SINE Alu 5 309 0 2309 93 0 10 chr3 156136093 156136403 -61900755 + AluSx SINE Alu 1 307 -5 215 220 0 20 chr3 156137033 156137083 -61900075 - L2 LINE L2 -244 3069 3021 2043 146 12 60 chr3 156137142 156137289 -61899869 + L1MB7 LINE L1 5430 5582 -596 1076 82 0 180 chr3 156137289 156137522 -61899636 - 7SK RNA RNA 0 193 3 2043 146 12 60 chr3 156137522 156137792 -61899366 + L1MB7 LINE L1 5582 5827 -351 1013 202 73 23 chr3 156137793 156138011 -61899147 + AluJo SINE Alu 1 229 -83 1827 170 25 6 chr3 156138013 156138372 -61898786 + L1MB7 LINE L1 5814 6179 -5 288 219 0 161 chr3 156138386 156138481 -61898677 + L1ME3 LINE L1 6040 6108 -54 2461 73 0 3 chr3 156138481 156138784 -61898374 + AluY SINE Alu 1 302 -9 288 219 0 161 chr3 156138784 156138825 -61898333 + L1ME3 LINE L1 6108 6154 -8 * 821 239 18 18 chr3 156138824 156139046 -61898112 + L1ME3 LINE L1 5934 6155 -7 615 217 66 12 chr3 156139781 156139947 -61897211 + MER104 DNA MER2_type 5 179 -1 507 327 61 77 chr3 156140616 156141233 -61895925 + L2 LINE L2 2682 3271 -1 24 53 0 0 chr3 156141249 156141287 -61895871 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr3 156141743 156141764 -61895394 + AT_rich Low_complexity Low_complexity 1 21 0 873 182 0 13 chr3 156141937 156142091 -61895067 + FRAM SINE Alu 24 175 -1 2207 115 3 0 chr3 156142223 156142518 -61894640 + AluSq SINE Alu 1 296 -17 461 106 0 0 chr3 156143611 156143677 -61893481 - AluSc SINE Alu -11 298 233 2339 83 0 0 chr3 156143701 156143990 -61893168 - AluSc SINE Alu -20 289 1 363 238 89 10 chr3 156143992 156144093 -61893065 - MIR SINE MIR -70 192 84 4936 130 67 8 chr3 156144115 156144970 -61892188 + L1MB3 LINE L1 5279 6183 0 1252 183 14 9 chr3 156147465 156147678 -61889480 - AluJo SINE Alu -69 243 30 524 289 144 30 chr3 156147758 156147890 -61889268 - L1ME4a LINE L1 -17 6104 5988 2075 120 0 19 chr3 156147890 156148198 -61888960 - AluSx SINE Alu -10 302 1 524 289 144 30 chr3 156148198 156148529 -61888629 - L1ME4a LINE L1 -133 5988 5588 5089 52 3 9 chr3 156148548 156149189 -61887969 - L1PA7 LINE L1 -4 6150 5514 548 42 0 0 chr3 156149192 156149263 -61887895 - MER41A LTR ERV1 -88 466 396 21 0 0 0 chr3 156149458 156149479 -61887679 + GC_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr3 156149479 156149506 -61887652 + AT_rich Low_complexity Low_complexity 1 27 0 697 228 65 65 chr3 156149606 156149724 -61887434 - L1 LINE L1 -1188 4958 4841 315 0 0 0 chr3 156149724 156149759 -61887399 + (TG)n Simple_repeat Simple_repeat 2 36 0 697 228 65 65 chr3 156149759 156149925 -61887233 - L1 LINE L1 -1305 4841 4676 2248 113 7 0 chr3 156149925 156150226 -61886932 - AluSq SINE Alu -10 303 1 697 228 65 65 chr3 156150226 156150247 -61886911 - L1 LINE L1 -1470 4676 4656 2002 148 3 0 chr3 156150247 156150557 -61886601 - AluSx SINE Alu -1 311 1 697 228 65 65 chr3 156150557 156150587 -61886571 - L1 LINE L1 -1489 4657 4621 1149 215 25 77 chr3 156150601 156150723 -61886435 - L1MEc LINE L1 -5644 752 625 1061 199 34 0 chr3 156150723 156150929 -61886229 + MER20 DNA MER1_type 4 216 -3 1149 215 25 77 chr3 156150929 156151159 -61885999 - L1MEc LINE L1 -5771 625 418 310 242 98 52 chr3 156151159 156151196 -61885962 - MIR SINE MIR -30 232 198 2337 83 0 20 chr3 156151196 156151497 -61885661 + AluSg SINE Alu 1 295 -15 310 242 98 52 chr3 156151497 156151612 -61885546 - MIR SINE MIR -64 198 73 197 268 0 18 chr3 156152122 156152178 -61884980 - MIR SINE MIR -50 212 158 338 302 0 21 chr3 156152272 156152368 -61884790 + (CA)n Simple_repeat Simple_repeat 2 95 0 317 233 50 29 chr3 156152387 156152512 -61884646 - MIR SINE MIR -63 145 24 1548 162 43 43 chr3 156152766 156153069 -61884089 + AluJb SINE Alu 1 303 -9 305 182 18 0 chr3 156153467 156153522 -61883636 - MIR3 SINE MIR -36 172 117 1481 295 75 9 chr3 156153568 156154199 -61882959 + Charlie7 DNA MER1_type 51 722 -1890 241 298 186 16 chr3 156154221 156154345 -61882813 + MIR SINE MIR 100 244 -18 222 37 0 0 chr3 156154692 156154719 -61882439 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 2031 134 3 0 chr3 156154719 156155003 -61882155 - AluJo SINE Alu -26 286 2 21 0 0 0 chr3 156155078 156155099 -61882059 + AT_rich Low_complexity Low_complexity 1 21 0 1092 189 0 0 chr3 156157575 156157750 -61879408 + FAM SINE Alu 1 175 0 799 253 47 19 chr3 156158189 156158446 -61878712 + L1ME1 LINE L1 5898 6161 -5 340 280 98 85 chr3 156158467 156158785 -61878373 + L3 LINE CR1 1251 1572 -5 406 257 57 0 chr3 156159171 156159311 -61877847 - L1ME4a LINE L1 -287 5834 5687 2038 128 7 7 chr3 156159655 156159959 -61877199 - AluSx SINE Alu -8 304 1 2311 99 0 7 chr3 156160394 156160698 -61876460 + AluSx SINE Alu 1 302 -10 482 247 63 23 chr3 156160717 156160891 -61876267 + L1ME3A LINE L1 5964 6144 -26 366 369 16 19 chr3 156361525 156361807 -61675351 - L1 LINE L1 -3085 3061 2786 425 333 81 59 chr3 156361825 156362330 -61674828 - HAL1 LINE L1 -879 1628 1113 276 213 0 0 chr3 156364584 156364645 -61672513 + (TG)n Simple_repeat Simple_repeat 2 62 0 250 217 67 0 chr3 156364787 156364847 -61672311 + L2 LINE L2 3208 3271 -1 264 264 0 33 chr3 156364962 156365053 -61672105 + (TATG)n Simple_repeat Simple_repeat 1 88 0 326 243 6 22 chr3 156365053 156365148 -61672010 + (TATATG)n Simple_repeat Simple_repeat 1 93 -85 13811 139 28 25 chr3 156365148 156367560 -61669598 + Tigger1 DNA MER2_type 1 2418 0 326 243 6 22 chr3 156367560 156367645 -61669513 + (TATATG)n Simple_repeat Simple_repeat 93 178 0 259 357 53 22 chr3 156367782 156368009 -61669149 - L2 LINE L2 -1575 1739 1506 560 203 68 31 chr3 156368094 156368257 -61668901 + MLT1A2 LTR MaLR 4 172 -218 335 216 0 10 chr3 156368289 156368391 -61668767 + GA-rich Low_complexity Low_complexity 1 101 0 760 228 11 5 chr3 156368431 156368615 -61668543 + MLT1A2 LTR MaLR 190 374 0 192 211 281 0 chr3 156368922 156368979 -61668179 - MIR SINE MIR -173 89 17 375 252 78 0 chr3 156369054 156369169 -61667989 + MIR SINE MIR 104 227 -35 734 284 54 38 chr3 156369288 156369658 -61667500 - L2 LINE L2 -1807 1507 1132 730 218 207 0 chr3 156370005 156370198 -61666960 - MIR SINE MIR -8 254 22 261 353 52 9 chr3 156370433 156370549 -61666609 - L2 LINE L2 -49 3223 3103 538 296 68 37 chr3 156370905 156371157 -61666001 + MIR SINE MIR 2 260 -2 320 298 73 8 chr3 156371454 156371578 -61665580 - MIR SINE MIR -12 250 119 5412 194 56 37 chr3 156371582 156374462 -61662696 + L1PA16 LINE L1 4143 6155 -11 1823 224 17 2 chr3 156374466 156374886 -61662272 + L1MC4 LINE L1 7238 7663 -379 330 339 50 0 chr3 156374931 156375052 -61662106 + L1MC4 LINE L1 7775 7901 -141 2171 61 0 40 chr3 156375071 156375349 -61661809 - AluY SINE Alu -15 296 30 333 78 0 0 chr3 156375349 156375400 -61661758 - AluY SINE Alu -226 82 32 473 108 0 0 chr3 156375400 156375465 -61661693 - AluS SINE Alu -248 65 1 586 272 133 22 chr3 156375557 156375803 -61661355 + MIR SINE MIR 12 262 0 207 0 0 0 chr3 156376064 156376087 -61661071 + (T)n Simple_repeat Simple_repeat 1 23 0 945 227 20 49 chr3 156377553 156377800 -61659358 - MIR SINE MIR -21 241 2 3257 169 81 23 chr3 156378680 156379506 -61657652 + L1MA6 LINE L1 4934 5844 -456 201 94 0 0 chr3 156379506 156379538 -61657620 + (CA)n Simple_repeat Simple_repeat 2 33 0 3257 169 81 23 chr3 156379538 156379796 -61657362 + L1MA6 LINE L1 5844 6086 -214 296 313 62 14 chr3 156379905 156380049 -61657109 + L2 LINE L2 3163 3313 0 899 255 69 4 chr3 156380061 156380292 -61656866 + MIR SINE MIR 9 254 -8 40 21 0 0 chr3 156380772 156380819 -61656339 + AT_rich Low_complexity Low_complexity 1 47 0 23 68 0 0 chr3 156381646 156381690 -61655468 + AT_rich Low_complexity Low_complexity 1 44 0 325 319 11 0 chr3 156381804 156381895 -61655263 - MIR SINE MIR -84 178 87 2289 129 16 19 chr3 156382932 156383297 -61653861 + THE1B LTR MaLR 1 364 0 2547 221 116 13 chr3 156384333 156385408 -61651750 - MER69 DNA AcHobo -3 2523 28 267 313 12 0 chr3 156385888 156385968 -61651190 + G-rich Low_complexity Low_complexity 6 86 0 738 264 95 16 chr3 156388132 156388374 -61648784 + MIR SINE MIR 2 262 0 1934 174 0 13 chr3 156388597 156388908 -61648250 - AluSx SINE Alu -5 307 1 258 288 0 45 chr3 156388962 156389073 -61648085 + A-rich Low_complexity Low_complexity 4 109 0 21 57 0 0 chr3 156390034 156390069 -61647089 + AT_rich Low_complexity Low_complexity 1 35 0 807 325 37 4 chr3 156390131 156390377 -61646781 + MIR SINE MIR 3 256 -6 226 307 129 106 chr3 156390722 156391155 -61646003 - L2 LINE L2 -339 2975 2533 418 260 189 12 chr3 156392058 156392231 -61644927 + MIR SINE MIR 12 207 -54 31878 62 3 2 chr3 156392242 156396531 -61640627 + L1PA4 LINE L1 11 4302 -1844 7382 32 8 0 chr3 156396657 156398026 -61639132 + L1PA4 LINE L1 4775 6153 -2 222 236 0 0 chr3 156400408 156400463 -61636695 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 26 30 0 0 chr3 156400791 156400824 -61636334 + AT_rich Low_complexity Low_complexity 1 33 0 198 191 0 0 chr3 156401247 156401294 -61635864 + (CTCA)n Simple_repeat Simple_repeat 1 47 0 521 259 37 6 chr3 156401402 156401564 -61635594 - MER104 DNA Tc2 -5 175 9 2262 115 3 3 chr3 156401758 156402106 -61635052 + L1PB1 LINE L1 5800 6147 -4 550 192 42 17 chr3 156402239 156402359 -61634799 + MER96 DNA MER1_type? 53 175 0 968 276 110 24 chr3 156402422 156402878 -61634280 + LTR33 LTR ERVL 12 506 -15 279 325 41 8 chr3 156403473 156403596 -61633562 - MIR3 SINE MIR -15 193 67 22 0 0 0 chr3 156403608 156403630 -61633528 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 156403664 156403685 -61633473 + AT_rich Low_complexity Low_complexity 1 21 0 1108 204 61 27 chr3 156403921 156404315 -61632843 - L1MCa LINE L1 -3644 2571 2154 287 258 80 90 chr3 156404333 156404709 -61632449 - L1MCa LINE L1 -4312 2084 1713 * 2293 276 92 47 chr3 156404685 156405582 -61631576 - L1M4c LINE L1 -4415 2723 1868 1933 124 8 0 chr3 156405582 156405849 -61631309 - AluSx SINE Alu -4 308 40 2293 276 92 47 chr3 156405849 156407439 -61629719 - L1M4c LINE L1 -5270 1868 11 2746 190 82 41 chr3 156407540 156407782 -61629376 + Looper DNA T2_type 3 234 -1324 1602 120 73 0 chr3 156407782 156408015 -61629143 - AluSq SINE Alu -1 312 63 2746 190 82 41 chr3 156408015 156408110 -61629048 + Looper DNA T2_type 234 324 -1234 2311 119 0 0 chr3 156408110 156408422 -61628736 + AluSx SINE Alu 1 312 0 2746 190 82 41 chr3 156408422 156408985 -61628173 + Looper DNA T2_type 324 941 -617 192 350 0 0 chr3 156409205 156409265 -61627893 - MER5A DNA MER1_type -2 187 128 814 256 78 69 chr3 156409288 156409648 -61627510 - MLT1A2 LTR MaLR -11 363 1 338 191 22 56 chr3 156409648 156409737 -61627421 - MER5A DNA MER1_type -93 96 11 323 268 42 143 chr3 156412184 156412568 -61624590 + L2 LINE L2 2928 3272 0 261 57 0 0 chr3 156413795 156413830 -61623328 + (TG)n Simple_repeat Simple_repeat 1 35 0 279 309 29 29 chr3 156413893 156414032 -61623126 + MER5B DNA MER1_type 1 139 -39 744 293 20 20 chr3 156414487 156414733 -61622425 - MIR SINE MIR -1 261 16 605 135 18 0 chr3 156417203 156417314 -61619844 + (TCCA)n Simple_repeat Simple_repeat 2 114 0 239 224 13 0 chr3 156417364 156417440 -61619718 + (CCCA)n Simple_repeat Simple_repeat 4 80 0 1986 119 3 17 chr3 156417812 156418105 -61619053 + AluSx SINE Alu 1 289 -23 390 303 40 57 chr3 156418256 156418566 -61618592 - L2 LINE L2 -286 3027 2716 310 247 115 82 chr3 156419208 156419390 -61617768 - L1MC5 LINE L1 -48 7913 7726 325 344 62 6 chr3 156419784 156419944 -61617214 - MIR SINE MIR -58 204 36 394 314 135 0 chr3 156420332 156420488 -61616670 - L2 LINE L2 -324 2989 2813 654 283 25 76 chr3 156420630 156421037 -61616121 - MLT1H LTR MaLR -163 386 1 434 146 78 10 chr3 156421078 156421181 -61615977 - L1MEc LINE L1 -3361 2854 2745 2282 96 14 17 chr3 156421307 156421660 -61615498 + L1MA1 LINE L1 5945 6296 -6 21 0 0 0 chr3 156421670 156421691 -61615467 + AT_rich Low_complexity Low_complexity 1 21 0 946 276 40 45 chr3 156421758 156421851 -61615307 - L1MEc LINE L1 -4778 1618 1526 2584 52 7 0 chr3 156421851 156422160 -61614998 - AluY SINE Alu 0 311 1 946 276 40 45 chr3 156422160 156422708 -61614450 - L1MEc LINE L1 -4870 1526 980 * 5293 150 16 4 chr3 156422693 156423731 -61613427 - L1PB3 LINE L1 0 6154 5100 1083 261 103 54 chr3 156423924 156424080 -61613078 + L2 LINE L2 2606 2753 -560 1753 101 4 0 chr3 156424080 156424318 -61612840 - AluY SINE Alu -15 296 58 1083 261 103 54 chr3 156424318 156424807 -61612351 + L2 LINE L2 2753 3277 -36 2214 115 0 0 chr3 156425233 156425519 -61611639 - AluSc SINE Alu -23 286 1 274 184 237 0 chr3 156426576 156426652 -61610506 + MIR SINE MIR 59 152 -110 32 43 0 0 chr3 156427727 156427773 -61609385 + AT_rich Low_complexity Low_complexity 1 46 0 273 264 47 28 chr3 156429129 156429235 -61607923 + L2 LINE L2 3141 3248 -24 * 2045 284 89 9 chr3 156429234 156429997 -61607161 + L2 LINE L2 1243 2066 -1248 537 276 16 27 chr3 156430170 156430355 -61606803 - MLT1I LTR MaLR -117 292 110 813 180 102 0 chr3 156432848 156433054 -61604104 + L1MA6 LINE L1 6074 6300 0 235 226 81 16 chr3 156433428 156433490 -61603668 - L2 LINE L2 -67 3205 3140 413 317 90 0 chr3 156433746 156433891 -61603267 - MIR3 SINE MIR -23 185 28 233 272 33 11 chr3 156434635 156434727 -61602431 + MLT1L LTR MaLR 197 290 -325 226 279 51 13 chr3 156434962 156435041 -61602117 + L2 LINE L2 2770 2851 -463 240 35 0 0 chr3 156435439 156435468 -61601690 + (TG)n Simple_repeat Simple_repeat 1 29 0 377 263 44 26 chr3 156436446 156436560 -61600598 + L2 LINE L2 3195 3310 -3 569 231 59 11 chr3 156437147 156437333 -61599825 + L1ME LINE L1 5528 5722 -399 24 32 0 0 chr3 156437373 156437404 -61599754 + AT_rich Low_complexity Low_complexity 1 31 0 382 86 70 39 chr3 156437404 156437532 -61599626 + (TATAA)n Simple_repeat Simple_repeat 5 136 0 49 0 0 0 chr3 156437532 156437581 -61599577 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr3 156437697 156437718 -61599440 + AT_rich Low_complexity Low_complexity 1 21 0 196 118 73 0 chr3 156437718 156437786 -61599372 + (TATAA)n Simple_repeat Simple_repeat 4 76 0 303 194 20 39 chr3 156437786 156437901 -61599257 - L1MC4 LINE L1 -1339 6983 1995 343 93 105 0 chr3 156437904 156438066 -61599092 + (TA)n Simple_repeat Simple_repeat 2 180 0 28 29 0 0 chr3 156438098 156438133 -61599025 + AT_rich Low_complexity Low_complexity 1 35 0 328 310 55 0 chr3 156438246 156438391 -61598767 + L1ME4a LINE L1 5966 6118 -3 748 224 122 118 chr3 156439863 156440509 -61596649 + L1MC4 LINE L1 7178 7826 -216 243 105 0 0 chr3 156440519 156440557 -61596601 + L1MC4 LINE L1 7789 7826 -216 256 136 0 0 chr3 156440561 156440605 -61596553 + L1MC4 LINE L1 7783 7826 -216 338 207 24 79 chr3 156440609 156440773 -61596385 + L1MC4 LINE L1 7746 7900 -142 21 0 0 0 chr3 156440796 156440817 -61596341 + AT_rich Low_complexity Low_complexity 1 21 0 339 143 32 0 chr3 156440917 156440980 -61596178 + MER116 DNA Mariner 1 65 -15 324 320 36 78 chr3 156440980 156441289 -61595869 + L1 LINE L1 3452 3747 -2399 300 257 0 59 chr3 156441477 156441578 -61595580 - MIR SINE MIR -33 229 135 528 152 8 48 chr3 156441586 156441614 -61595544 - L1ME LINE L1 -520 6040 6012 1150 163 71 113 chr3 156441614 156441995 -61595163 + MLT1A1 LTR MaLR 1 365 0 528 152 8 48 chr3 156441995 156442091 -61595067 - L1ME LINE L1 -548 6012 5921 667 231 41 0 chr3 156442161 156442356 -61594802 - L1ME LINE L1 -1014 5526 5324 1703 230 95 4 chr3 156442356 156442829 -61594329 - MLT1E2 LTR MaLR 0 626 111 278 167 0 115 chr3 156442872 156442950 -61594208 - MLT1E2 LTR MaLR -585 69 1 7795 238 62 20 chr3 156442950 156444369 -61592789 - L1ME LINE L1 -1212 5328 3970 2357 111 0 0 chr3 156444369 156444675 -61592483 - AluSg SINE Alu -4 306 1 7795 238 62 20 chr3 156444675 156444861 -61592297 - L1ME LINE L1 -2570 3970 3793 1637 163 19 7 chr3 156444861 156445131 -61592027 - AluJo SINE Alu -39 273 1 7795 238 62 20 chr3 156445131 156446759 -61590399 - L1ME LINE L1 -2747 3793 1961 470 254 71 30 chr3 156446765 156447171 -61589987 - L1ME LINE L1 -5084 1446 1017 246 278 9 19 chr3 156447215 156447323 -61589835 - L1ME LINE L1 -5514 1029 923 336 388 28 47 chr3 156447871 156448193 -61588965 - L1ME LINE L1 -6210 330 15 24 32 0 0 chr3 156449185 156449216 -61587942 + AT_rich Low_complexity Low_complexity 1 31 0 577 315 80 5 chr3 156449294 156449507 -61587651 - MIR SINE MIR -9 253 25 1729 168 7 20 chr3 156449903 156450195 -61586963 + AluJo SINE Alu 6 293 -19 380 232 12 0 chr3 156450766 156450848 -61586310 - MIR SINE MIR -85 177 95 242 171 0 0 chr3 156450865 156450906 -61586252 + MIR SINE MIR 222 262 0 895 227 22 0 chr3 156452461 156452646 -61584512 + MER5A DNA MER1_type 1 189 0 289 164 15 60 chr3 156453857 156453924 -61583234 - L2 LINE L2 0 3313 3250 3725 173 19 24 chr3 156455095 156455276 -61581882 - L1MD1 LINE L1 0 6242 6062 1301 190 107 34 chr3 156455276 156455539 -61581619 + AluJo SINE Alu 1 282 -30 282 29 0 0 chr3 156455542 156455577 -61581581 + (GA)n Simple_repeat Simple_repeat 2 36 0 3725 173 19 24 chr3 156455577 156456148 -61581010 - L1MD1 LINE L1 -182 6060 5490 1128 233 3 3 chr3 156456155 156456443 -61580715 - L1MD1 LINE L1 -1255 4891 4604 2152 122 0 0 chr3 156456694 156457004 -61580154 + AluSg SINE Alu 1 310 0 2292 106 0 13 chr3 156458012 156458324 -61578834 + AluSq SINE Alu 5 312 -1 194 287 170 43 chr3 156459937 156460031 -61577127 - L2 LINE L2 -15 3257 3152 267 306 94 0 chr3 156460458 156460543 -61576615 + L2 LINE L2 3221 3313 0 336 294 67 8 chr3 156460696 156460815 -61576343 + MIR3 SINE MIR 34 159 -49 197 189 54 108 chr3 156460843 156460917 -61576241 - MER5B DNA MER1_type -20 158 89 1246 263 136 38 chr3 156461763 156462545 -61574613 - L2 LINE L2 -170 3143 2253 372 281 194 35 chr3 156462624 156462774 -61574384 + L2 LINE L2 2911 3036 -277 2124 104 3 39 chr3 156462774 156463081 -61574077 - AluSc SINE Alu -13 296 1 372 281 194 35 chr3 156463081 156463271 -61573887 + L2 LINE L2 3036 3305 -8 2460 71 0 0 chr3 156463325 156463621 -61573537 + AluY SINE Alu 1 296 -15 930 179 13 85 chr3 156464534 156464769 -61572389 + MER20 DNA MER1_type 1 218 -1 470 282 9 56 chr3 156464857 156465080 -61572078 + MLT1J2 LTR MaLR 3 212 -197 281 176 20 0 chr3 156465094 156465145 -61572013 - MER5A DNA MER1_type -1 188 137 600 252 7 0 chr3 156465190 156465325 -61571833 - MER5A DNA MER1_type -53 136 1 417 261 0 101 chr3 156465339 156465527 -61571631 + MLT1J2 LTR MaLR 272 440 -10 1663 154 22 32 chr3 156467055 156467367 -61569791 - AluJo SINE Alu -3 309 1 362 281 118 28 chr3 156467767 156467945 -61569213 - MIR SINE MIR -19 243 50 310 333 73 87 chr3 156468890 156469329 -61567829 - L2 LINE L2 -4 3268 2836 206 298 85 57 chr3 156469367 156469439 -61567719 - L2 LINE L2 -906 2408 2333 281 244 423 0 chr3 156469439 156469562 -61567596 - MER5A DNA MER1_type -3 186 12 21 36 0 0 chr3 156470507 156470535 -61566623 + AT_rich Low_complexity Low_complexity 1 28 0 411 114 25 63 chr3 156471315 156471394 -61565764 - MER69 DNA AcHobo -2 2524 2449 * 639 185 96 7 chr3 156471389 156471524 -61565634 - MER69 DNA AcHobo -1079 147 1 194 189 38 38 chr3 156471742 156471795 -61565363 + L2 LINE L2 3218 3270 -2 5408 139 26 59 chr3 156472681 156473736 -61563422 + L1MB3 LINE L1 3 1023 -5361 * 9058 189 32 11 chr3 156473730 156478511 -61558647 + L1MB3 LINE L1 1348 6418 -1 642 286 36 5 chr3 156479149 156479341 -61557817 - MER58A DNA MER1_type -26 198 1 2589 53 0 0 chr3 156479825 156480127 -61557031 + AluY SINE Alu 1 302 -9 302 210 297 58 chr3 156480431 156480569 -61556589 + MIR SINE MIR 86 256 -6 280 314 108 10 chr3 156480865 156480967 -61556191 + L2 LINE L2 3190 3301 -12 1597 220 16 14 chr3 156484600 156484964 -61552194 - MLT1A1 LTR MaLR 0 365 1 407 355 60 46 chr3 156485068 156485437 -61551721 + MLT1K LTR MaLR 17 390 -198 1549 131 0 0 chr3 156486172 156486432 -61550726 + AluSg/x SINE Alu 84 343 0 819 259 134 10 chr3 156486495 156486808 -61550350 - L1ME3A LINE L1 -117 6053 5702 346 214 135 6 chr3 156486845 156486947 -61550211 - L1ME3A LINE L1 -579 5585 5483 1746 275 112 11 chr3 156486964 156487825 -61549333 - L1ME3A LINE L1 -1480 4666 3719 706 268 133 15 chr3 156487880 156488339 -61548819 - L1ME3A LINE L1 -2563 3583 3071 305 230 130 25 chr3 156488943 156489104 -61548054 + L1MC4a LINE L1 5704 5881 -1927 336 276 16 39 chr3 156489327 156489454 -61547704 - L1ME LINE L1 -543 5578 5455 21 0 0 0 chr3 156490867 156490888 -61546270 + AT_rich Low_complexity Low_complexity 1 21 0 200 176 39 0 chr3 156493188 156493239 -61543919 + (TA)n Simple_repeat Simple_repeat 2 54 0 611 345 41 0 chr3 156494016 156494262 -61542896 - L3 LINE CR1 -5 1572 1317 1249 162 0 55 chr3 156494898 156495001 -61542157 - L1MC1 LINE L1 -9 6324 6217 2354 70 0 0 chr3 156495001 156495322 -61541836 - AluY SINE Alu 0 321 1 1249 162 0 55 chr3 156495322 156495452 -61541706 - L1MC1 LINE L1 -116 6217 6103 1568 169 68 37 chr3 156495520 156495874 -61541284 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr3 156498190 156498212 -61538946 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr3 156498354 156498396 -61538762 + AT_rich Low_complexity Low_complexity 1 42 0 408 339 16 0 chr3 156499856 156499977 -61537181 + L2 LINE L2 3149 3271 -1 331 312 57 8 chr3 156499983 156500230 -61536928 + L1ME3A LINE L1 5513 5771 -350 14741 119 31 30 chr3 156500233 156500411 -61536747 - Tigger1 DNA MER2_type 0 2418 2242 2264 109 0 0 chr3 156500411 156500713 -61536445 + AluSg1 SINE Alu 1 302 -7 14741 119 31 30 chr3 156500713 156501653 -61535505 - Tigger1 DNA MER2_type -176 2242 1305 2674 43 0 32 chr3 156501653 156501998 -61535160 - L1PA5 LINE L1 -3 6151 5818 14741 119 31 30 chr3 156501998 156503292 -61533866 - Tigger1 DNA MER2_type -1113 1305 1 1123 299 77 34 chr3 156503321 156504397 -61532761 - L1M4 LINE L1 -2100 4046 2924 265 347 76 18 chr3 156504604 156504829 -61532329 - L1MC/D LINE L1 -2182 5626 5389 560 257 108 51 chr3 156506427 156506742 -61530416 - L1ME3A LINE L1 -219 6187 5855 247 247 0 62 chr3 156506747 156506828 -61530330 - L1ME3A LINE L1 -619 5783 5708 2069 291 90 27 chr3 156506828 156507955 -61529203 - L2 LINE L2 -5 3308 2139 1413 213 55 19 chr3 156507982 156508343 -61528815 + MLT1A2 LTR MaLR 1 374 0 933 238 30 22 chr3 156508357 156508588 -61528570 - MIR SINE MIR -25 237 5 418 258 106 70 chr3 156508613 156509037 -61528121 - L1ME3A LINE L1 -725 5673 5235 673 241 64 41 chr3 156509059 156509279 -61527879 + L1ME3A LINE L1 5946 6170 0 394 236 130 83 chr3 156509286 156509562 -61527596 - L1ME3A LINE L1 -3953 2431 2143 719 298 80 21 chr3 156509592 156510018 -61527140 - L1ME3A LINE L1 -5236 1136 686 21 0 0 0 chr3 156511671 156511692 -61525466 + AT_rich Low_complexity Low_complexity 1 21 0 241 293 69 46 chr3 156511857 156512031 -61525127 - L2 LINE L2 -1232 2082 1905 1318 181 220 41 chr3 156512494 156512881 -61524277 + MSTB2 LTR MaLR 2 457 0 24 32 0 0 chr3 156513040 156513071 -61524087 + AT_rich Low_complexity Low_complexity 1 31 0 398 279 52 4 chr3 156513155 156513303 -61523855 - MIR SINE MIR -65 143 19 246 226 172 65 chr3 156513664 156513850 -61523308 + L1ME4a LINE L1 5847 6052 -69 230 184 20 0 chr3 156514376 156514425 -61522733 + L1M2a LINE L1 654 703 -6465 445 349 22 17 chr3 156515972 156516204 -61520954 + MIR SINE MIR 30 262 0 265 279 0 0 chr3 156516288 156516356 -61520802 - MER81 DNA DNA -2 112 45 238 224 15 15 chr3 156516450 156516517 -61520641 - MER116 DNA Mariner -4 76 10 214 194 0 0 chr3 156516633 156516669 -61520489 - L2 LINE L2 -13 3300 3265 2011 119 31 39 chr3 156518022 156518382 -61518776 + THE1B LTR MaLR 8 364 0 207 0 0 0 chr3 156518452 156518475 -61518683 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 193 200 100 20 chr3 156518965 156519015 -61518143 - MIR SINE MIR -93 169 116 1183 193 140 21 chr3 156519860 156520232 -61516926 + Charlie1b DNA MER1_type 4 443 -2318 726 170 228 0 chr3 156520232 156520403 -61516755 + MER63A DNA MER1_type 1 210 0 1183 193 140 21 chr3 156520403 156520493 -61516665 + Charlie1b DNA MER1_type 443 521 -2 257 278 10 31 chr3 156520712 156520809 -61516349 + MIR3 SINE MIR 112 206 -2 236 350 110 0 chr3 156520849 156521012 -61516146 + L2 LINE L2 2871 3051 -221 481 219 17 25 chr3 156521163 156521282 -61515876 - L2 LINE L2 0 3313 3196 21 0 0 0 chr3 156523777 156523798 -61513360 + AT_rich Low_complexity Low_complexity 1 21 0 358 273 133 30 chr3 156524300 156524465 -61512693 + MIR SINE MIR 16 197 -65 552 250 14 0 chr3 156524936 156525076 -61512082 + MER5B DNA MER1_type 1 142 -36 539 313 68 0 chr3 156525218 156525381 -61511777 + MER5B DNA MER1_type 5 178 0 224 317 50 30 chr3 156527682 156527783 -61509375 + L3b LINE CR1 1397 1499 -84 198 0 0 0 chr3 156527936 156527958 -61509200 + (GA)n Simple_repeat Simple_repeat 2 23 0 21 36 0 0 chr3 156528035 156528063 -61509095 + AT_rich Low_complexity Low_complexity 1 28 0 316 289 25 50 chr3 156528778 156528937 -61508221 + MIR SINE MIR 101 255 -7 1720 219 84 41 chr3 156529098 156529633 -61507525 + MLT1F1 LTR MaLR 10 567 0 259 238 199 19 chr3 156529689 156529845 -61507313 + MIR3 SINE MIR 22 207 -1 5235 114 20 38 chr3 156530979 156531812 -61505346 - L1PA16 LINE L1 0 6166 5333 2270 58 0 4 chr3 156531812 156532089 -61505069 - AluY SINE Alu -2 309 34 5235 114 20 38 chr3 156532089 156532760 -61504398 - L1PA16 LINE L1 -833 5333 4651 234 390 50 0 chr3 156533001 156533101 -61504057 + L2 LINE L2 3123 3227 -45 401 354 22 39 chr3 156533551 156533732 -61503426 - MIR3 SINE MIR -15 193 16 2075 245 112 41 chr3 156534327 156535089 -61502069 + L2 LINE L2 1617 2432 -882 907 259 186 30 chr3 156535148 156535589 -61501569 + L2 LINE L2 2804 3313 0 189 206 0 0 chr3 156537070 156537104 -61500054 - L2 LINE L2 -16 3256 3223 229 309 40 32 chr3 156537955 156538081 -61499077 + MLT1H LTR MaLR 29 155 -394 349 282 39 19 chr3 156538235 156538391 -61498767 + MLT1H LTR MaLR 391 549 0 2254 182 9 7 chr3 156538495 156538918 -61498240 + MLT1C LTR MaLR 1 424 -43 369 287 50 155 chr3 156538984 156539462 -61497696 + L2 LINE L2 2841 3268 -4 890 264 177 32 chr3 156541924 156542615 -61494543 + L2 LINE L2 2382 3221 -92 2183 122 42 33 chr3 156542615 156542976 -61494182 + THE1B LTR MaLR 1 364 0 890 264 177 32 chr3 156542976 156543085 -61494073 + L2 LINE L2 3221 3313 0 238 209 257 38 chr3 156543089 156543194 -61493964 - MIR SINE MIR -115 147 20 182 330 80 23 chr3 156543764 156543852 -61493306 + MIR SINE MIR 58 150 -58 556 237 111 5 chr3 156543886 156544093 -61493065 + LTR50 LTR ERVL 1 229 -566 305 278 152 0 chr3 156544122 156544320 -61492838 + LTR50 LTR ERVL 488 715 -80 2035 128 56 19 chr3 156544597 156544957 -61492201 + THE1C LTR MaLR 3 375 0 9173 110 85 40 chr3 156544957 156546469 -61490689 + THE1C-int LTR MaLR 1 1580 0 2151 111 64 19 chr3 156546469 156546828 -61490330 + THE1C LTR MaLR 1 375 0 180 293 0 0 chr3 156547014 156547055 -61490103 + L3 LINE CR1 1464 1504 -73 199 108 162 0 chr3 156547730 156547767 -61489391 + MER5A DNA MER1_type 34 76 -113 * 397 231 58 10 chr3 156547758 156547862 -61489296 - MER5A DNA MER1_type -77 112 4 21 57 0 0 chr3 156548192 156548227 -61488931 + AT_rich Low_complexity Low_complexity 1 35 0 2311 100 0 0 chr3 156548494 156548785 -61488373 + AluSq SINE Alu 1 291 -22 504 299 48 38 chr3 156548789 156549080 -61488078 + L1ME4a LINE L1 2879 3172 -2974 192 280 20 0 chr3 156549212 156549262 -61487896 + MIR SINE MIR 86 136 -72 249 366 76 74 chr3 156549657 156550037 -61487121 - L2 LINE L2 0 3272 2892 227 279 47 78 chr3 156551036 156551165 -61485993 + MIR3 SINE MIR 32 156 -52 224 254 139 49 chr3 156551528 156551650 -61485508 + L2 LINE L2 3139 3271 -1 188 359 107 34 chr3 156552645 156552907 -61484251 + L2 LINE L2 2214 2494 -820 305 240 10 20 chr3 156555611 156555711 -61481447 - LTR67 LTR ERVL 0 557 459 350 238 24 12 chr3 156555944 156556028 -61481130 - MLT1K LTR MaLR -502 86 2 193 160 0 227 chr3 156556377 156556452 -61480706 - L3 LINE CR1 -234 1343 1286 457 310 71 29 chr3 156556475 156556966 -61480192 + L1ME4a LINE L1 4335 4846 -1300 23 33 0 0 chr3 156557171 156557201 -61479957 + AT_rich Low_complexity Low_complexity 1 30 0 1697 155 29 0 chr3 156557403 156557680 -61479478 - AluJo SINE Alu -5 307 23 436 292 101 52 chr3 156557779 156558535 -61478623 + L1ME4a LINE L1 5312 6104 -17 24 0 0 0 chr3 156558544 156558568 -61478590 + AT_rich Low_complexity Low_complexity 1 24 0 181 279 73 15 chr3 156558791 156558859 -61478299 - L3 LINE CR1 -1229 348 277 282 56 0 0 chr3 156559893 156559929 -61477229 + (TG)n Simple_repeat Simple_repeat 2 37 0 301 255 9 104 chr3 156560590 156560696 -61476462 + MIR SINE MIR 21 116 -146 22 0 0 0 chr3 156560769 156560791 -61476367 + AT_rich Low_complexity Low_complexity 1 22 0 354 357 14 7 chr3 156562648 156562788 -61474370 + MIR SINE MIR 20 160 -102 642 284 137 9 chr3 156562859 156563070 -61474088 + MIR SINE MIR 2 239 -23 960 265 13 4 chr3 156563725 156563955 -61473203 + MIR SINE MIR 23 254 -8 449 273 76 18 chr3 156563973 156564139 -61473019 + MIR SINE MIR 69 252 -10 353 279 158 13 chr3 156564260 156564418 -61472740 + MIR SINE MIR 61 241 -21 267 326 186 16 chr3 156564455 156564891 -61472267 + L2 LINE L2 2383 2892 -422 430 151 11 11 chr3 156569069 156569162 -61467996 + CT-rich Low_complexity Low_complexity 3 95 0 214 244 0 0 chr3 156569616 156569661 -61467497 + GA-rich Low_complexity Low_complexity 1 45 0 650 233 57 0 chr3 156569793 156569952 -61467206 + MIR SINE MIR 48 215 -47 1784 170 0 20 chr3 156570461 156570767 -61466391 + AluJb SINE Alu 1 300 -12 34 0 0 0 chr3 156570767 156570801 -61466357 + AT_rich Low_complexity Low_complexity 1 34 0 831 266 39 26 chr3 156571103 156571336 -61465822 + MIR SINE MIR 17 252 -10 243 170 0 21 chr3 156571527 156571574 -61465584 + MIR SINE MIR 213 258 -4 242 157 0 20 chr3 156571574 156571625 -61465533 + GA-rich Low_complexity Low_complexity 1 50 0 2785 108 22 12 chr3 156572851 156573260 -61463898 + MER4A LTR ERV1 252 664 0 1045 261 185 20 chr3 156574769 156575276 -61461882 - L2 LINE L2 0 3313 2726 693 335 56 33 chr3 156575467 156575858 -61461300 + L3 LINE CR1 1178 1577 0 568 260 27 13 chr3 156576755 156576905 -61460253 - MIR SINE MIR -14 248 97 1217 171 51 9 chr3 156576954 156577170 -61459988 + MER7A DNA MER2_type 1 223 -123 491 242 10 0 chr3 156577302 156577401 -61459757 + MER7A DNA MER2_type 247 346 0 257 269 102 0 chr3 156577401 156577498 -61459660 - MIR SINE MIR -63 145 44 562 251 94 0 chr3 156577873 156578044 -61459114 + MIR SINE MIR 76 262 0 951 177 12 6 chr3 156579947 156580111 -61457047 + FRAM SINE Alu 1 165 -1 477 321 80 9 chr3 156582044 156582256 -61454902 - MIR SINE MIR -2 260 34 216 171 0 0 chr3 156584013 156584054 -61453104 + (CA)n Simple_repeat Simple_repeat 1 41 0 1811 176 7 3 chr3 156584362 156584658 -61452500 - AluJo SINE Alu -9 303 7 3815 110 48 38 chr3 156584785 156585393 -61451765 + LTR18B LTR ERVL 1 614 0 2493 65 0 0 chr3 156587734 156588028 -61449130 - L1PA7 LINE L1 -2 6152 5859 590 117 13 49 chr3 156588028 156588156 -61449002 + L1PA7 LINE L1 5750 5866 -323 346 291 0 0 chr3 156588856 156588942 -61448216 - L2 LINE L2 -1 3312 3227 29 60 0 0 chr3 156590260 156590310 -61446848 + AT_rich Low_complexity Low_complexity 1 50 0 1730 203 133 37 chr3 156590992 156591480 -61445678 + MLT1F LTR MaLR 1 535 -7 312 333 18 26 chr3 156591984 156592098 -61445060 - L2 LINE L2 -19 3294 3182 527 316 19 0 chr3 156593199 156593354 -61443804 - Charlie8 DNA MER1_type -2256 161 4 265 236 214 0 chr3 156593589 156593678 -61443480 + L1MEd LINE L1 78 185 -5934 1816 117 3 39 chr3 156593821 156594104 -61443054 + AluSq SINE Alu 1 273 -40 333 0 0 0 chr3 156594104 156594141 -61443017 + (TC)n Simple_repeat Simple_repeat 2 38 0 267 31 0 0 chr3 156594140 156594172 -61442986 + (TA)n Simple_repeat Simple_repeat 1 32 0 * 34 24 0 0 chr3 156594279 156594320 -61442838 + AT_rich Low_complexity Low_complexity 1 41 0 248 223 223 55 chr3 156594383 156594621 -61442537 + L1MEd LINE L1 932 1209 -4910 416 299 59 20 chr3 156595053 156595307 -61441851 - L1MC4a LINE L1 -1872 5936 5673 1887 167 7 0 chr3 156595512 156595818 -61441340 - AluJb SINE Alu -4 308 1 1680 252 113 63 chr3 156595933 156596990 -61440168 + HAL1 LINE L1 443 1551 -956 1375 178 64 43 chr3 156597118 156597399 -61439759 - AluJb SINE Alu -25 287 1 369 258 44 48 chr3 156599186 156599415 -61437743 - L1MC4a LINE L1 -1443 4703 4476 1829 176 35 24 chr3 156600638 156601007 -61436151 + LTR69 LTR ERVL 216 588 0 401 310 30 30 chr3 156601020 156601217 -61435941 - MIR SINE MIR 0 262 66 2306 89 0 10 chr3 156601257 156601559 -61435599 - AluY SINE Alu -12 299 1 10867 33 0 0 chr3 156602050 156604045 -61433113 + L1PA4 LINE L1 4156 6153 -2 31742 54 2 0 chr3 156605260 156609157 -61428001 + L1P LINE L1 114 4017 -2129 237 270 81 47 chr3 156609312 156609460 -61427698 - L1 LINE L1 -1104 5042 4890 * 850 270 85 32 chr3 156609449 156609827 -61427331 - HAL1b LINE L1 -803 545 148 24 0 0 0 chr3 156610379 156610403 -61426755 + AT_rich Low_complexity Low_complexity 1 24 0 914 237 148 11 chr3 156610468 156610924 -61426234 - MLT1G1 LTR MaLR 0 595 2 422 284 99 43 chr3 156611541 156611914 -61425244 - L1 LINE L1 -1537 4609 4216 1548 146 8 12 chr3 156611958 156612204 -61424954 - L1PB4 LINE L1 0 6156 5912 316 289 25 50 chr3 156613014 156613173 -61423985 + MIR SINE MIR 101 255 -7 1720 219 84 41 chr3 156613328 156613869 -61423289 + MLT1F1 LTR MaLR 6 567 0 259 238 199 19 chr3 156613925 156614081 -61423077 + MIR3 SINE MIR 22 207 -1 218 304 40 99 chr3 156615000 156615253 -61421905 - L2 LINE L2 -86 3186 2949 937 207 61 9 chr3 156615312 156615525 -61421633 + MER58A DNA MER1_type 1 224 0 191 342 142 35 chr3 156615525 156615551 -61421607 - L2 LINE L2 -434 2880 2858 834 252 53 62 chr3 156615551 156615892 -61421266 + MER102b DNA MER1_type 4 341 0 191 342 142 35 chr3 156615892 156616181 -61420977 - L2 LINE L2 -456 2858 2531 213 214 26 43 chr3 156618144 156618261 -61418897 + (CGCGG)n Simple_repeat Simple_repeat 1 115 0 28 0 0 0 chr3 156618269 156618297 -61418861 + GC_rich Low_complexity Low_complexity 1 28 0 227 279 47 78 chr3 156619791 156619920 -61417238 + MIR3 SINE MIR 32 156 -52 2494 78 0 7 chr3 156620427 156620734 -61416424 - AluY SINE Alu -6 305 1 264 300 23 89 chr3 156621129 156621386 -61415772 - HAL1 LINE L1 -864 1643 1404 650 203 54 0 chr3 156621386 156621534 -61415624 + MER93b LTR ERV1 190 345 -28 348 240 16 47 chr3 156621941 156622070 -61415088 - Charlie8 DNA MER1_type -2247 170 46 199 322 67 22 chr3 156622093 156622183 -61414975 + L3 LINE CR1 1288 1381 -196 24 32 0 0 chr3 156623310 156623341 -61413817 + AT_rich Low_complexity Low_complexity 1 31 0 398 279 52 4 chr3 156623425 156623573 -61413585 - MIR SINE MIR -65 143 19 324 335 84 30 chr3 156624666 156624833 -61412325 - L3 LINE CR1 -279 1298 1123 575 315 141 13 chr3 156624912 156625217 -61411941 + L3 LINE CR1 433 776 -801 21 0 0 0 chr3 156625264 156625285 -61411873 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 156625402 156625423 -61411735 + AT_rich Low_complexity Low_complexity 1 21 0 609 253 56 6 chr3 156626238 156626416 -61410742 + MIR SINE MIR 58 244 -18 1138 244 25 19 chr3 156626652 156627124 -61410034 + L1P LINE L1 1 475 -5671 455 285 32 6 chr3 156628234 156628392 -61408766 + CT-rich Low_complexity Low_complexity 5 166 0 21 0 0 0 chr3 156629134 156629155 -61408003 + AT_rich Low_complexity Low_complexity 1 21 0 265 326 23 45 chr3 156629497 156629629 -61407529 - L2 LINE L2 -217 3055 2927 21 0 0 0 chr3 156630519 156630540 -61406618 + AT_rich Low_complexity Low_complexity 1 21 0 655 288 70 98 chr3 156631131 156631804 -61405354 - L1MEd LINE L1 -5005 1114 461 225 163 0 0 chr3 156632605 156632654 -61404504 + (TTCA)n Simple_repeat Simple_repeat 1 49 0 20776 166 25 13 chr3 156632706 156637997 -61399161 + L1M1 LINE L1 12 5374 -2191 3865 108 38 64 chr3 156637997 156638171 -61398987 + L1MA3 LINE L1 5590 5767 -538 2042 133 3 0 chr3 156638171 156638456 -61398702 + AluSp SINE Alu 1 286 -27 423 0 0 0 chr3 156638456 156638503 -61398655 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 3865 108 38 64 chr3 156638503 156639062 -61398096 + L1MA3 LINE L1 5765 6305 0 1354 150 45 0 chr3 156640166 156640386 -61396772 - MER30 DNA MER1_type 0 230 1 288 0 0 0 chr3 156640830 156640862 -61396296 + (CA)n Simple_repeat Simple_repeat 2 33 0 797 176 42 6 chr3 156642639 156642804 -61394354 + MER5B DNA MER1_type 2 172 -6 437 211 11 0 chr3 156642862 156642952 -61394206 - MER5A DNA MER1_type -90 99 9 255 217 0 33 chr3 156643614 156643674 -61393484 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 282 341 56 32 chr3 156644015 156644141 -61393017 - MIR3 SINE MIR -38 170 42 1421 147 39 82 chr3 156644880 156645186 -61391972 - AluJb SINE Alu -19 293 1 215 356 67 0 chr3 156645732 156645836 -61391322 - L2 LINE L2 -27 3286 3176 212 324 184 15 chr3 156645856 156645992 -61391166 - L2 LINE L2 -12 3260 3102 * 252 270 80 0 chr3 156645991 156646091 -61391067 + MIR SINE MIR 69 176 -86 506 312 169 22 chr3 156646672 156647085 -61390073 + L3 LINE CR1 989 1462 -115 7023 57 5 1 chr3 156647565 156648520 -61388638 + L1PA5 LINE L1 5201 6151 -3 183 321 24 24 chr3 156648644 156648728 -61388430 + L2 LINE L2 3230 3313 0 586 204 0 0 chr3 156649076 156649179 -61387979 - MER96 DNA MER1_type? -48 127 25 531 282 75 48 chr3 156649692 156649944 -61387214 + MIR SINE MIR 3 261 -1 361 283 20 0 chr3 156650173 156650272 -61386886 + MIR3 SINE MIR 101 201 -7 469 345 75 6 chr3 156650742 156650916 -61386242 + L2 LINE L2 3082 3267 -5 213 291 206 14 chr3 156651037 156651178 -61385980 + MIR SINE MIR 47 214 -48 217 346 15 60 chr3 156651375 156651508 -61385650 + MIR SINE MIR 19 145 -63 30 27 0 0 chr3 156652750 156652787 -61384371 + AT_rich Low_complexity Low_complexity 1 37 0 32 26 0 0 chr3 156653644 156653683 -61383475 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr3 156653874 156653899 -61383259 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr3 156654789 156654810 -61382348 + AT_rich Low_complexity Low_complexity 1 21 0 508 350 25 0 chr3 156654969 156655132 -61382026 + MER5A DNA MER1_type 19 185 -4 318 273 41 111 chr3 156655136 156655308 -61381850 - MIR3 SINE MIR -17 191 32 1921 139 36 18 chr3 156655979 156656310 -61380848 - MER1B DNA MER1_type 0 337 1 203 0 0 36 chr3 156656421 156656449 -61380709 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2084 108 0 0 chr3 156656487 156656810 -61380348 + AluSc SINE Alu 1 323 0 465 301 43 58 chr3 156657475 156657854 -61379304 - L1MC/D LINE L1 -2096 5712 5340 2507 70 0 0 chr3 156657854 156658156 -61379002 - AluY SINE Alu -9 302 1 465 301 43 58 chr3 156658156 156658241 -61378917 - L1MC/D LINE L1 -2468 5340 5255 21 82 0 0 chr3 156658448 156658497 -61378661 + AT_rich Low_complexity Low_complexity 1 49 0 2343 86 3 3 chr3 156658993 156659284 -61377874 - AluSp SINE Alu -22 291 1 1896 138 3 10 chr3 156659475 156659765 -61377393 + AluSx SINE Alu 1 288 -24 677 221 132 59 chr3 156660364 156660636 -61376522 + L1ME3A LINE L1 4883 5134 -1036 2888 16 0 0 chr3 156660636 156660954 -61376204 + AluYb8 SINE Alu 1 318 0 677 221 132 59 chr3 156660954 156661624 -61375534 + L1ME3A LINE L1 5134 5882 -288 988 209 0 0 chr3 156661709 156661881 -61375277 + FRAM SINE Alu 1 165 -11 2238 105 0 7 chr3 156662176 156662499 -61374659 - AluSc SINE Alu 0 309 2 459 224 84 14 chr3 156663402 156663545 -61373613 - MER53 DNA DNA -36 153 1 1213 255 74 38 chr3 156665155 156665574 -61371584 - MLT1J2 LTR MaLR -16 434 1 391 282 97 43 chr3 156665574 156665936 -61371222 - L1MC4a LINE L1 -325 5796 5534 1709 172 0 49 chr3 156666194 156666520 -61370638 - AluSx SINE Alu -2 310 1 558 242 65 7 chr3 156666549 156666702 -61370456 - MIR SINE MIR -33 229 68 22 0 0 0 chr3 156666917 156666939 -61370219 + AT_rich Low_complexity Low_complexity 1 22 0 190 292 106 35 chr3 156667532 156667645 -61369513 + MIR SINE MIR 86 206 -56 856 180 7 0 chr3 156668212 156668351 -61368807 - MER3 DNA MER1_type -68 141 2 892 220 84 14 chr3 156669216 156669430 -61367728 - MIR SINE MIR -22 240 12 214 348 185 5 chr3 156669943 156670127 -61367031 + L2 LINE L2 2426 2642 -672 1467 117 0 0 chr3 156670314 156670511 -61366647 - AluSx SINE Alu -6 304 108 260 184 0 20 chr3 156670511 156670560 -61366598 - MIR SINE MIR -203 59 12 804 131 0 0 chr3 156670813 156670920 -61366238 - AluSx SINE Alu -205 108 2 220 331 33 16 chr3 156670935 156671056 -61366102 + L2 LINE L2 2921 3043 -270 1710 116 19 39 chr3 156671155 156671466 -61365692 - L1MA3 LINE L1 -103 6202 5898 380 297 128 59 chr3 156671548 156671938 -61365220 + L1M2 LINE L1 836 1252 -5597 239 200 0 18 chr3 156672979 156673034 -61364124 + MIR SINE MIR 208 261 -1 234 0 0 0 chr3 156673232 156673258 -61363900 + (TG)n Simple_repeat Simple_repeat 2 27 0 727 265 32 5 chr3 156673294 156673479 -61363679 + MIR SINE MIR 2 191 -71 24 32 0 0 chr3 156673789 156673820 -61363338 + AT_rich Low_complexity Low_complexity 1 31 0 279 300 37 34 chr3 156674017 156674177 -61362981 - L1M4 LINE L1 -564 5610 5456 227 288 34 0 chr3 156674180 156674239 -61362919 + MIR SINE MIR 82 142 -66 400 248 35 50 chr3 156674473 156674614 -61362544 + L2 LINE L2 3154 3292 -21 7060 52 47 0 chr3 156674618 156675754 -61361404 + L1PA7 LINE L1 4970 6146 -8 554 278 163 13 chr3 156676213 156676440 -61360718 + MIR SINE MIR 2 262 0 570 280 124 5 chr3 156676468 156676654 -61360504 - MIR SINE MIR -15 247 40 1548 125 27 5 chr3 156678008 156678232 -61358926 - MER30 DNA MER1_type -1 229 1 1211 231 150 58 chr3 156678365 156678971 -61358187 - L1MC5 LINE L1 -54 7907 7246 1833 184 29 6 chr3 156679023 156679370 -61357788 - MER90 LTR ERV1 -10 604 250 1089 98 50 173 chr3 156680509 156680786 -61356372 - L1MC2 LINE L1 0 6344 6102 266 253 24 12 chr3 156680973 156681056 -61356102 + MIR SINE MIR 179 262 0 534 248 172 0 chr3 156681905 156682050 -61355108 - MER5A DNA MER1_type -10 179 10 340 340 7 14 chr3 156682093 156682237 -61354921 + MIR SINE MIR 88 230 -32 193 276 78 82 chr3 156682832 156683064 -61354094 + L2 LINE L2 2832 3062 -251 246 277 71 0 chr3 156683116 156683228 -61353930 + L1ME LINE L1 5751 5870 -300 803 161 0 7 chr3 156684123 156684260 -61352898 - AluJb SINE Alu -176 136 1 1521 231 50 97 chr3 156684326 156684359 -61352799 + MLT1H LTR MaLR 1 34 -515 1698 193 55 14 chr3 156684359 156684706 -61352452 + MLT1A1 LTR MaLR 5 365 0 1521 231 50 97 chr3 156684706 156685248 -61351910 + MLT1H LTR MaLR 34 549 0 2713 32 3 0 chr3 156685447 156685756 -61351402 - AluY SINE Alu -1 310 1 27818 94 7 5 chr3 156685983 156690056 -61347102 + HERVH LTR ERV1 3695 7713 0 3327 87 7 7 chr3 156690056 156690504 -61346654 + LTR7 LTR ERV1 1 448 -2 341 311 108 54 chr3 156691368 156691719 -61345439 + L1M2 LINE L1 1022 1391 -5458 713 236 122 63 chr3 156693189 156693410 -61343748 - MIR SINE MIR -25 237 16 2333 124 50 14 chr3 156693657 156694019 -61343139 - THE1C LTR MaLR 0 375 1 301 283 9 19 chr3 156694853 156694959 -61342199 - L1ME LINE L1 -507 5655 5551 661 282 70 91 chr3 156695060 156695260 -61341898 - L1ME LINE L1 -800 5346 5143 2239 104 10 3 chr3 156695260 156695558 -61341600 - AluSx SINE Alu -10 302 3 661 282 70 91 chr3 156695558 156696074 -61341084 - L1ME LINE L1 -1003 5143 4645 238 208 0 0 chr3 156696080 156696133 -61341025 + (TA)n Simple_repeat Simple_repeat 1 53 0 381 299 103 14 chr3 156696147 156696444 -61340714 + L1ME1 LINE L1 5609 5936 -242 2603 46 0 0 chr3 156698083 156698387 -61338771 + AluY SINE Alu 1 304 -7 263 299 0 0 chr3 156699672 156699739 -61337419 + MER5A DNA MER1_type 15 81 -108 180 61 30 30 chr3 156699751 156699784 -61337374 - MER5A DNA MER1_type -114 75 43 2072 143 161 11 chr3 156699976 156700348 -61336810 + MSTA LTR MaLR 1 428 0 6576 21 0 0 chr3 156701085 156701791 -61335367 + L1PA3 LINE L1 5450 6155 0 993 81 0 0 chr3 156702019 156702142 -61335016 + L1PA11 LINE L1 6052 6174 0 637 308 36 0 chr3 156702142 156702363 -61334795 + L1ME1 LINE L1 5933 6161 -5 196 240 0 60 chr3 156703028 156703078 -61334080 + L2 LINE L2 3261 3307 -6 203 269 19 0 chr3 156703768 156703820 -61333338 - L2 LINE L2 0 3313 3261 217 242 147 21 chr3 156704019 156704114 -61333044 - L2 LINE L2 -27 3286 3180 542 312 154 24 chr3 156704241 156704818 -61332340 - L2 LINE L2 -338 2976 2325 416 289 72 41 chr3 156704905 156705099 -61332059 + L2 LINE L2 2892 3091 -181 626 264 31 6 chr3 156705119 156705278 -61331880 + MIR SINE MIR 29 191 -71 410 308 75 8 chr3 156705338 156705471 -61331687 + L2 LINE L2 3126 3267 -5 620 256 211 20 chr3 156706807 156707163 -61329995 - MLT1L LTR MaLR -171 444 21 1875 174 6 3 chr3 156709781 156710092 -61327066 + AluJo SINE Alu 1 312 0 2384 77 3 3 chr3 156710319 156710618 -61326540 + AluSc SINE Alu 1 299 -10 212 320 107 0 chr3 156710636 156710739 -61326419 - MIR3 SINE MIR -92 116 3 231 36 0 0 chr3 156711424 156711452 -61325706 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 481 277 15 23 chr3 156711627 156711757 -61325401 + MIR SINE MIR 1 129 -133 226 302 54 39 chr3 156712082 156712211 -61324947 + L2 LINE L2 3103 3233 -80 396 285 51 15 chr3 156712244 156712381 -61324777 - L2 LINE L2 -2 3311 3170 186 43 0 0 chr3 156713799 156713822 -61323336 + (CAG)n Simple_repeat Simple_repeat 1 23 0 254 217 50 0 chr3 156713860 156713920 -61323238 - MIR SINE MIR -37 225 163 2122 221 45 50 chr3 156714479 156715138 -61322020 - MER21B LTR ERV1 -105 758 103 415 225 11 0 chr3 156715227 156715316 -61321842 - MER21B LTR ERV1 -773 90 1 180 0 0 0 chr3 156715569 156715589 -61321569 + (CATTT)n Simple_repeat Simple_repeat 2 21 0 734 228 13 32 chr3 156715703 156715861 -61321297 + MER5A DNA MER1_type 1 155 -34 6293 168 72 19 chr3 156716595 156717716 -61319442 + L1MC3 LINE L1 6168 7378 -407 5647 55 1 1 chr3 156717716 156718407 -61318751 + LTR8 LTR ERV1 1 691 0 6293 168 72 19 chr3 156718407 156718664 -61318494 + L1MC3 LINE L1 7378 7620 -165 755 147 29 69 chr3 156718672 156718876 -61318282 + L1MC2 LINE L1 6149 6344 0 2095 178 111 35 chr3 156719085 156719130 -61318028 - MLT2B3 LTR ERVL -1 553 513 836 108 8 0 chr3 156719130 156719260 -61317898 + (TAGA)n Simple_repeat Simple_repeat 3 133 0 2095 178 111 35 chr3 156719260 156719721 -61317437 - MLT2B3 LTR ERVL -41 513 9 189 304 0 0 chr3 156719997 156720043 -61317115 - MIR SINE MIR 0 262 217 476 301 222 14 chr3 156721660 156722231 -61314927 - L2 LINE L2 -50 3263 2546 208 271 51 0 chr3 156722234 156722293 -61314865 - L2 LINE L2 -1 3312 3251 361 353 60 13 chr3 156722357 156722507 -61314651 + L2 LINE L2 3099 3255 -17 1441 222 47 64 chr3 156722969 156723061 -61314097 + MLT1D LTR MaLR 1 93 -412 2248 106 7 0 chr3 156723061 156723363 -61313795 + AluSq SINE Alu 1 304 -9 1441 222 47 64 chr3 156723363 156723784 -61313374 + MLT1D LTR MaLR 93 505 0 623 257 28 0 chr3 156724039 156724218 -61312940 + MER115 DNA AcHobo 501 684 -9 1509 165 83 23 chr3 156724273 156724624 -61312534 + MER31-int LTR ERV1 4565 4936 0 2857 10 0 0 chr3 156724631 156724941 -61312217 - AluYb8 SINE Alu -8 310 1 28 0 0 0 chr3 156725092 156725120 -61312038 + AT_rich Low_complexity Low_complexity 1 28 0 278 107 18 0 chr3 156726663 156726719 -61310439 + (TA)n Simple_repeat Simple_repeat 2 58 0 737 286 76 26 chr3 156727306 156727649 -61309509 + LTR16A LTR ERVL 81 440 -10 189 0 0 0 chr3 156729556 156729577 -61307581 + (CTGTG)n Simple_repeat Simple_repeat 2 22 0 21 0 0 0 chr3 156731428 156731449 -61305709 + AT_rich Low_complexity Low_complexity 1 21 0 201 39 0 0 chr3 156731764 156731790 -61305368 + (TG)n Simple_repeat Simple_repeat 1 26 0 250 208 0 0 chr3 156733181 156733229 -61303929 - Charlie8 DNA MER1_type -997 1420 1373 231 247 47 59 chr3 156733307 156733392 -61303766 - Charlie8 DNA MER1_type -2333 84 1 440 294 130 0 chr3 156734899 156735076 -61302082 - MIR SINE MIR -6 256 57 731 61 0 0 chr3 156736084 156736182 -61300976 - L1P LINE L1 -2134 4012 3915 * 3606 29 11 0 chr3 156736181 156736633 -61300525 + L1P LINE L1 4037 4493 -1653 394 310 165 20 chr3 156737082 156737475 -61299683 + L2 LINE L2 1890 2339 -975 186 351 21 21 chr3 156737477 156737571 -61299587 + L2 LINE L2 2671 2764 -550 778 216 25 0 chr3 156740200 156740362 -61296796 + AluJb SINE Alu 136 301 -11 1260 153 51 29 chr3 156740955 156741268 -61295890 - MER33 DNA MER1_type -4 320 1 514 223 32 70 chr3 156742089 156742246 -61294912 + L2 LINE L2 3162 3312 -1 284 211 0 0 chr3 156742249 156742301 -61294857 + L2 LINE L2 2927 2978 -335 345 100 0 0 chr3 156742448 156742498 -61294660 + (CA)n Simple_repeat Simple_repeat 2 51 0 494 145 0 0 chr3 156742503 156742586 -61294572 + MER53 DNA DNA 1 83 -106 491 283 45 17 chr3 156742619 156742796 -61294362 + L2 LINE L2 3124 3305 -8 187 293 17 0 chr3 156743222 156743280 -61293878 + MIR3 SINE MIR 111 169 -39 1827 156 13 62 chr3 156743452 156743837 -61293321 + MER47A DNA MER2_type 1 366 0 185 302 0 23 chr3 156744070 156744113 -61293045 - L2 LINE L2 -97 3175 3134 2179 122 3 0 chr3 156744880 156745174 -61291984 + AluSg SINE Alu 1 295 -15 1900 199 41 29 chr3 156745427 156746072 -61291086 + L1PBb LINE L1 792 1535 -4668 251 349 42 15 chr3 156746302 156746437 -61290721 - MIR SINE MIR -73 135 20 2479 90 0 0 chr3 156748604 156748915 -61288243 - AluY SINE Alu 0 311 1 423 301 91 72 chr3 156749622 156750038 -61287120 + MLT1K LTR MaLR 141 564 -24 260 349 53 15 chr3 156751216 156751348 -61285810 + L2 LINE L2 3136 3272 0 318 174 83 0 chr3 156752042 156752174 -61284984 + (TA)n Simple_repeat Simple_repeat 2 144 0 41 48 0 0 chr3 156752231 156752293 -61284865 + AT_rich Low_complexity Low_complexity 1 62 0 318 337 82 30 chr3 156752297 156752837 -61284321 - L1ME4a LINE L1 -241 5880 5313 519 275 111 37 chr3 156752881 156753070 -61284088 - MIR SINE MIR -3 259 57 350 314 29 49 chr3 156753342 156753546 -61283612 - HAL1 LINE L1 -70 2437 2238 22 0 0 0 chr3 156753872 156753894 -61283264 + AT_rich Low_complexity Low_complexity 1 22 0 187 311 19 47 chr3 156753919 156754025 -61283133 - MIR SINE MIR -55 207 105 2068 121 40 3 chr3 156754060 156754383 -61282775 - MER1B DNA MER1_type 0 337 3 240 233 283 22 chr3 156754689 156754869 -61282289 + MLT1K LTR MaLR 332 558 -30 226 333 90 13 chr3 156754882 156754960 -61282198 - MIR3 SINE MIR -122 86 3 300 319 98 21 chr3 156758322 156758583 -61278575 + L2 LINE L2 2731 3008 -264 321 26 0 0 chr3 156758587 156758625 -61278533 + (CA)n Simple_repeat Simple_repeat 2 39 0 273 128 0 0 chr3 156758844 156758891 -61278267 + (TGAA)n Simple_repeat Simple_repeat 4 50 0 202 296 204 20 chr3 156759376 156759572 -61277586 - L2 LINE L2 -504 2810 2579 186 275 130 0 chr3 156759689 156759758 -61277400 + L2 LINE L2 3234 3311 -2 1066 140 56 9 chr3 156759870 156760084 -61277074 + L1MA8 LINE L1 6063 6286 -5 312 120 0 0 chr3 156761482 156761532 -61275626 + (CA)n Simple_repeat Simple_repeat 2 51 0 2151 160 67 45 chr3 156763267 156763669 -61273489 + Charlie1b DNA MER1_type 6 423 -2338 2205 107 3 16 chr3 156763669 156763977 -61273181 - AluSx SINE Alu -8 304 1 2151 160 67 45 chr3 156763977 156764081 -61273077 + Charlie1b DNA MER1_type 423 523 0 510 220 8 0 chr3 156764081 156764197 -61272961 + MER105 DNA DNA 46 162 -42 1915 248 46 46 chr3 156765517 156765589 -61271569 + MLT1E2 LTR MaLR 38 109 -517 2506 120 0 8 chr3 156765589 156765956 -61271202 + THE1B LTR MaLR 1 364 0 1915 248 46 46 chr3 156765956 156766472 -61270686 + MLT1E2 LTR MaLR 108 626 0 251 203 51 0 chr3 156767034 156767113 -61270045 + L1ME4a LINE L1 6035 6117 -4 998 118 0 0 chr3 156767509 156767636 -61269522 - AluSq/x SINE Alu -185 127 1 37549 71 8 9 chr3 156768149 156774288 -61262870 + L1PA5 LINE L1 12 6140 -14 238 303 101 0 chr3 156774641 156774730 -61262428 - MIR3 SINE MIR -42 166 69 1392 201 71 4 chr3 156776529 156776672 -61260486 - AluJo SINE Alu -26 286 154 219 69 0 0 chr3 156776672 156776701 -61260457 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 1392 201 71 4 chr3 156776701 156776825 -61260333 - AluJo SINE Alu -158 154 1 960 150 22 0 chr3 156776883 156777156 -61260002 + CT-rich Low_complexity Low_complexity 1 279 0 824 141 23 0 chr3 156777159 156777287 -61259871 - FLAM_C SINE Alu -2 131 1 368 286 206 24 chr3 156777678 156777930 -61259228 + MLT1H LTR MaLR 1 298 -251 442 254 79 0 chr3 156777967 156778093 -61259065 + MLT1H LTR MaLR 398 533 -16 2025 137 3 17 chr3 156778522 156778822 -61258336 - AluSx SINE Alu -16 296 1 378 42 0 0 chr3 156779314 156779362 -61257796 + (TG)n Simple_repeat Simple_repeat 2 49 0 185 309 0 18 chr3 156779414 156779469 -61257689 - L3 LINE CR1 -940 637 584 336 277 98 18 chr3 156780230 156780342 -61256816 - MIR SINE MIR -12 250 130 505 240 194 5 chr3 156780892 156781088 -61256070 + MIR SINE MIR 3 235 -27 641 320 23 53 chr3 156782002 156782436 -61254722 + L1MC/D LINE L1 4512 4932 -1214 444 212 35 56 chr3 156782776 156782867 -61254291 + L1MC/D LINE L1 5307 5384 -787 771 54 54 0 chr3 156782867 156782978 -61254180 + L1PA8 LINE L1 6053 6169 -3 444 212 35 56 chr3 156782978 156783075 -61254083 + L1MC/D LINE L1 5384 5482 -689 315 0 0 0 chr3 156783970 156784005 -61253153 + (TG)n Simple_repeat Simple_repeat 2 36 0 1848 199 21 12 chr3 156785097 156785423 -61251735 + MER63B DNA MER1_type 2 334 -728 2291 117 3 0 chr3 156785423 156785731 -61251427 - AluSq SINE Alu -4 309 1 1848 199 21 12 chr3 156785731 156785825 -61251333 + MER63B DNA MER1_type 334 426 -10 209 319 29 0 chr3 156785834 156785903 -61251255 + L2 LINE L2 3198 3268 -4 680 312 25 0 chr3 156786336 156786538 -61250620 + MIR SINE MIR 12 218 -44 923 188 0 75 chr3 156786842 156787055 -61250103 + AluJb SINE Alu 5 201 -111 400 265 184 0 chr3 156787055 156787191 -61249967 + MER5A DNA MER1_type 23 183 -6 1298 277 119 49 chr3 156787214 156788499 -61248659 - L1MC4 LINE L1 -733 7228 5761 1752 159 3 40 chr3 156788499 156788800 -61248358 + AluJb SINE Alu 1 290 -22 1298 277 119 49 chr3 156788800 156789197 -61247961 - L1MC4 LINE L1 -2200 5761 5393 36 23 0 0 chr3 156789238 156789281 -61247877 + AT_rich Low_complexity Low_complexity 1 43 0 774 186 0 0 chr3 156789958 156790082 -61247076 + FLAM_C SINE Alu 1 124 -9 449 254 0 7 chr3 156790094 156790236 -61246922 + GA-rich Low_complexity Low_complexity 2 142 0 180 298 21 0 chr3 156790457 156790504 -61246654 + MIR SINE MIR 60 107 -101 264 230 54 14 chr3 156790584 156790658 -61246500 + MIR3 SINE MIR 127 203 -5 356 259 74 101 chr3 156791769 156792105 -61245053 + L2 LINE L2 2987 3313 0 1223 168 44 32 chr3 156792935 156793251 -61243907 + MER33 DNA MER1_type 5 324 0 221 253 69 35 chr3 156794217 156794304 -61242854 + MIR SINE MIR 109 198 -64 308 271 122 45 chr3 156794597 156795065 -61242093 - L1MC5 LINE L1 -186 7775 7272 341 146 57 81 chr3 156795215 156795272 -61241886 - L1MC5 LINE L1 -261 7700 7643 2091 228 20 24 chr3 156795272 156795777 -61241381 + MLT1D LTR MaLR 3 505 0 341 146 57 81 chr3 156795777 156795842 -61241316 - L1MC5 LINE L1 -318 7643 7581 269 315 72 9 chr3 156795902 156796013 -61241145 - MIR3 SINE MIR -1 207 90 297 305 0 0 chr3 156796736 156796818 -61240340 + L2 LINE L2 3191 3272 0 559 359 59 7 chr3 156797192 156797482 -61239676 - LTR33 LTR ERVL -157 364 60 234 239 11 34 chr3 156797610 156797698 -61239460 + L1 LINE L1 4247 4332 -1814 227 299 23 0 chr3 156798066 156798153 -61239005 - HAL1 LINE L1 -854 1653 1565 414 317 49 49 chr3 156798157 156798444 -61238714 - L1MEd LINE L1 -4938 1181 895 709 215 55 25 chr3 156798678 156798878 -61238280 + MER20 DNA MER1_type 14 219 0 207 0 0 0 chr3 156799162 156799185 -61237973 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 248 240 51 0 chr3 156799615 156799707 -61237451 + L1 LINE L1 4737 4832 -1314 1349 136 8 40 chr3 156799861 156800112 -61237046 + THE1B LTR MaLR 122 364 0 243 301 127 29 chr3 156800170 156800343 -61236815 + LTR33 LTR ERVL 244 433 -88 294 320 178 12 chr3 156800349 156800596 -61236562 + L2 LINE L2 3021 3308 -5 1905 165 3 0 chr3 156801011 156801296 -61235862 - AluJo SINE Alu -23 289 4 256 289 178 46 chr3 156802063 156802215 -61234943 - MER5A DNA MER1_type 0 189 18 480 271 34 93 chr3 156802341 156802632 -61234526 + MER102b DNA MER1_type 68 341 0 283 272 24 117 chr3 156803991 156804197 -61232961 - MIR SINE MIR -55 207 21 686 227 170 48 chr3 156804209 156804438 -61232720 - MIR SINE MIR 0 262 6 612 209 109 70 chr3 156805803 156806004 -61231154 + MER63A DNA MER1_type 2 210 0 973 283 35 21 chr3 156806172 156806511 -61230647 + LTR16A LTR ERVL 97 440 -10 437 217 66 18 chr3 156807314 156807480 -61229678 + Charlie7 DNA MER1_type 2431 2604 -8 23 54 0 0 chr3 156807638 156807675 -61229483 + AT_rich Low_complexity Low_complexity 1 37 0 838 246 81 70 chr3 156807776 156808146 -61229012 + L2 LINE L2 2939 3312 -1 2102 148 0 0 chr3 156809408 156809705 -61227453 + AluSx SINE Alu 1 297 -15 187 405 26 7 chr3 156811520 156811673 -61225485 + MIR3 SINE MIR 53 208 0 534 282 58 137 chr3 156811761 156812264 -61224894 - L2 LINE L2 0 3313 2851 526 238 18 55 chr3 156812337 156812501 -61224657 + MER5B DNA MER1_type 21 178 0 185 290 32 16 chr3 156812533 156812595 -61224563 + MIR3 SINE MIR 125 187 -21 212 167 21 0 chr3 156813195 156813243 -61223915 + (TAG)n Simple_repeat Simple_repeat 2 50 0 2089 135 3 10 chr3 156813726 156814037 -61223121 + AluSx SINE Alu 1 309 -3 641 219 88 103 chr3 156815142 156815384 -61221774 + MER5C DNA MER1_type 1 238 -86 2376 95 0 0 chr3 156815384 156815680 -61221478 + AluSg SINE Alu 1 296 -14 641 219 88 103 chr3 156815680 156815766 -61221392 + MER5C DNA MER1_type 238 324 0 270 236 83 28 chr3 156816589 156816661 -61220497 + L2 LINE L2 3169 3244 -28 22 0 0 0 chr3 156817108 156817130 -61220028 + AT_rich Low_complexity Low_complexity 1 22 0 182 208 19 0 chr3 156817195 156817248 -61219910 + (TA)n Simple_repeat Simple_repeat 2 55 0 207 279 23 0 chr3 156819530 156819573 -61217585 - L2 LINE L2 -21 3251 3208 2982 81 14 109 chr3 156820048 156820543 -61216615 + LTR7 LTR ERV1 1 448 -2 3119 98 2 24 chr3 156820545 156821014 -61216144 + HERVH LTR ERV1 1 459 -7254 11041 117 5 12 chr3 156821120 156822789 -61214369 + HERVH LTR ERV1 1992 3648 -4065 5789 136 9 18 chr3 156823156 156824108 -61213050 + HERVH LTR ERV1 792 1735 -5978 802 155 25 0 chr3 156824642 156824803 -61212355 + GA-rich Low_complexity Low_complexity 1 165 0 195 42 0 0 chr3 156824823 156824847 -61212311 + (GGAAA)n Simple_repeat Simple_repeat 3 26 0 715 238 94 28 chr3 156875388 156875674 -61161484 + MER102b DNA MER1_type 37 341 0 275 284 0 0 chr3 156875970 156876044 -61161114 - MIR SINE MIR -116 146 73 485 248 9 9 chr3 156876092 156876205 -61160953 - MER81 DNA DNA -1 113 1 346 248 55 28 chr3 156876994 156877103 -61160055 - MIR3 SINE MIR -25 183 72 251 193 35 0 chr3 156877937 156877994 -61159164 + L1MB8 LINE L1 6067 6125 -53 738 126 0 0 chr3 156877994 156878105 -61159053 + AluSq/x SINE Alu 1 111 -202 525 101 10 50 chr3 156878109 156878195 -61158963 + AluSg/x SINE Alu 217 300 -12 323 172 0 0 chr3 156878195 156878253 -61158905 + L1MB7 LINE L1 6115 6172 -12 525 101 10 50 chr3 156878253 156878265 -61158893 + AluSg/x SINE Alu 300 311 -1 2186 130 0 0 chr3 156878911 156879211 -61157947 + AluSx SINE Alu 1 300 -12 2518 153 29 2 chr3 156879406 156879823 -61157335 + MSTA LTR MaLR 1 428 0 238 226 35 131 chr3 156880758 156880824 -61156334 - MIR SINE MIR -25 237 166 2130 114 4 0 chr3 156880824 156881105 -61156053 - AluSx SINE Alu -30 282 1 238 226 35 131 chr3 156881105 156881212 -61155946 - MIR SINE MIR -96 166 84 180 77 0 0 chr3 156881629 156881655 -61155503 + (TG)n Simple_repeat Simple_repeat 2 27 0 303 363 65 0 chr3 156882404 156882528 -61154630 + MIR SINE MIR 19 150 -58 11175 68 11 1 chr3 156882792 156884274 -61152884 - HERVL LTR ERVL -2107 3547 2051 252 317 58 83 chr3 156885376 156885616 -61151542 - L3 LINE CR1 -37 1540 1307 22 0 0 0 chr3 156886099 156886121 -61151037 + AT_rich Low_complexity Low_complexity 1 22 0 311 283 19 0 chr3 156886296 156886402 -61150756 + L1ME3A LINE L1 6056 6163 -7 2149 63 0 76 chr3 156886983 156887299 -61149859 + AluY SINE Alu 1 292 -19 1207 228 120 12 chr3 156888628 156888788 -61148370 + MLT1A2 LTR MaLR 1 142 -232 1371 175 37 0 chr3 156888788 156889034 -61148124 + L1PA15 LINE L1 5908 6162 -3 1207 228 120 12 chr3 156889034 156889207 -61147951 + MLT1A2 LTR MaLR 142 370 -4 1239 81 12 0 chr3 156889379 156889539 -61147619 + AluSp SINE Alu 1 162 -151 6860 202 51 19 chr3 156891390 156893622 -61143536 - L1PB2 LINE L1 0 6151 3700 2204 134 3 0 chr3 156893622 156893929 -61143229 - AluSx SINE Alu -4 308 1 6860 202 51 19 chr3 156893929 156894378 -61142780 - L1PB2 LINE L1 -2451 3700 3267 716 208 59 115 chr3 156895124 156895316 -61141842 + L1MC5 LINE L1 7432 7633 -328 490 192 10 0 chr3 156895316 156895415 -61141743 + L1PB4 LINE L1 6056 6155 -1 716 208 59 115 chr3 156895415 156895745 -61141413 + L1MC5 LINE L1 7633 7925 -36 964 181 40 11 chr3 156897703 156897880 -61139278 + MER5A DNA MER1_type 7 188 -1 1320 184 128 41 chr3 156898001 156898126 -61139032 - MER93b LTR ERV1 0 373 260 2225 125 0 3 chr3 156898126 156898437 -61138721 - AluSg SINE Alu 0 310 1 1320 184 128 41 chr3 156898437 156898654 -61138504 - MER93b LTR ERV1 -113 260 1 225 178 0 0 chr3 156898803 156898848 -61138310 + T-rich Low_complexity Low_complexity 1 45 0 388 321 15 0 chr3 156900516 156900647 -61136511 - MIR SINE MIR -72 190 58 217 206 14 14 chr3 156901429 156901502 -61135656 + GA-rich Low_complexity Low_complexity 3 75 0 1199 228 42 50 chr3 156902073 156902450 -61134708 + MLT1A2 LTR MaLR 1 374 0 241 291 58 0 chr3 156902721 156902807 -61134351 - L3 LINE CR1 -852 725 635 279 263 173 23 chr3 156902837 156902970 -61134188 + MER117 DNA MER1_type 5 157 -40 832 77 60 0 chr3 156903897 156904065 -61133093 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 1805 135 24 0 chr3 156904781 156905078 -61132080 - MLT2A2 LTR ERVL -149 304 1 7313 38 15 0 chr3 156905507 156906659 -61130499 - L1PA3 LINE L1 0 6155 4997 11134 33 2 0 chr3 156906659 156908073 -61129085 + L1P LINE L1 2879 4295 -1851 269 119 0 179 chr3 156908936 156909091 -61128067 - AluJ/FRAM SINE Alu 0 368 226 359 312 167 0 chr3 156909379 156909517 -61127641 + MIR3 SINE MIR 42 202 -6 452 277 9 0 chr3 156909840 156909952 -61127206 + MIR3 SINE MIR 92 204 -4 741 148 0 49 chr3 156910805 156910947 -61126211 + FLAM_C SINE Alu 1 135 -8 1235 33 13 0 chr3 156910999 156911152 -61126006 - L1PA4 LINE L1 0 6155 6001 394 221 53 0 chr3 156914903 156914998 -61122160 - LTR16C LTR ERVL 0 491 392 8672 63 27 1 chr3 156917247 156918393 -61118765 + HERVL-A1 LTR ERVL 4479 5654 0 2558 111 39 5 chr3 156918393 156918780 -61118378 + MLT2A1 LTR ERVL 1 400 -44 303 93 0 0 chr3 156918781 156918824 -61118334 + (TG)n Simple_repeat Simple_repeat 2 44 0 226 114 91 0 chr3 156918825 156918869 -61118289 + MLT2A1 LTR ERVL 390 437 -7 208 153 0 34 chr3 156919538 156919597 -61117561 + A-rich Low_complexity Low_complexity 3 59 0 692 170 47 0 chr3 156919622 156919793 -61117365 - MER53 DNA DNA -7 182 4 484 253 66 14 chr3 156919894 156920266 -61116892 - LTR16C LTR ERVL -3 488 72 279 270 88 75 chr3 156920956 156921115 -61116043 + L2 LINE L2 3153 3313 0 5166 196 72 39 chr3 156921204 156922625 -61114533 + L1MCa LINE L1 3 1469 -4957 14610 183 54 8 chr3 156922644 156922788 -61114370 - L1MA2 LINE L1 -7 7716 7580 1526 203 14 7 chr3 156922788 156923079 -61114079 + AluJb SINE Alu 1 293 -19 14610 183 54 8 chr3 156923079 156929612 -61107546 - L1MA2 LINE L1 -143 7580 719 813 177 28 70 chr3 156929610 156929677 -61107481 - L1MA2 LINE L1 -7344 221 153 * 1932 103 4 8 chr3 156929677 156929957 -61107201 + AluSg SINE Alu 38 310 0 813 177 28 70 chr3 156929957 156930104 -61107054 - L1MA2 LINE L1 -7412 153 16 * 2428 178 110 31 chr3 156930102 156930927 -61106231 + L1MCa LINE L1 1644 2418 -4008 375 281 0 0 chr3 156930915 156931043 -61106115 + L1MCa LINE L1 3051 3178 -3248 * 2526 232 17 80 chr3 156931165 156932814 -61104344 + L1MCa LINE L1 3967 5450 -976 1529 174 0 42 chr3 156932821 156933132 -61104026 + L1MC1 LINE L1 6030 6327 -6 2855 19 0 0 chr3 156933301 156933614 -61103544 + AluYb8 SINE Alu 1 313 -5 344 189 0 0 chr3 156933767 156933841 -61103317 + L1PB4 LINE L1 6083 6156 0 412 207 0 0 chr3 156933917 156933999 -61103159 + L1MB8 LINE L1 5903 5984 -194 350 249 187 86 chr3 156934916 156935050 -61102108 - MLT1J LTR MaLR -21 594 475 2572 58 0 7 chr3 156935050 156935359 -61101799 - AluY SINE Alu -4 307 1 350 249 187 86 chr3 156935359 156935550 -61101608 - MLT1J LTR MaLR -140 475 234 724 300 74 0 chr3 156936899 156937142 -61100016 - MIR SINE MIR 0 262 2 1266 232 195 45 chr3 156937677 156938194 -61098964 - MLT1G1 LTR MaLR 0 595 1 438 198 0 0 chr3 156938256 156938342 -61098816 - MLT1G1 LTR MaLR -509 86 1 279 79 0 0 chr3 156938468 156938506 -61098652 + (TG)n Simple_repeat Simple_repeat 2 39 0 619 210 131 39 chr3 156938710 156939237 -61097921 - L1MC4a LINE L1 -728 5428 5303 37 0 0 0 chr3 156939653 156939690 -61097468 + AT_rich Low_complexity Low_complexity 1 37 0 3470 173 107 58 chr3 156939705 156940634 -61096524 - LTR13 LTR ERVK -33 974 1 1956 113 3 53 chr3 156940963 156941110 -61096048 + AluSx SINE Alu 1 127 -185 2167 118 0 10 chr3 156941110 156941415 -61095743 + AluSx SINE Alu 1 302 -10 1956 113 3 53 chr3 156941415 156941568 -61095590 + AluSx SINE Alu 127 286 -26 816 194 12 6 chr3 156943085 156943250 -61093908 - MLT1A1 LTR MaLR -22 343 178 350 145 0 14 chr3 156943281 156943350 -61093808 + (TCC)n Simple_repeat Simple_repeat 3 70 0 650 232 7 0 chr3 156943350 156943488 -61093670 - MLT1A1 LTR MaLR -235 139 1 494 299 158 6 chr3 156943793 156943970 -61093188 + MIR SINE MIR 58 261 -1 868 149 0 0 chr3 156944703 156944837 -61092321 + AluSg/x SINE Alu 179 312 0 384 257 99 0 chr3 156944864 156944965 -61092193 - L2 LINE L2 0 3313 3203 * 480 377 19 19 chr3 156944961 156945173 -61091985 - L2 LINE L2 -453 2861 2650 565 180 36 9 chr3 156945997 156946108 -61091050 - MER81 DNA DNA 0 114 1 892 250 20 5 chr3 156946889 156947089 -61090069 + MIR SINE MIR 39 241 -21 550 246 7 7 chr3 156947136 156947274 -61089884 + MLT2F LTR ERVL 1 138 -525 403 277 242 25 chr3 156947307 156947621 -61089537 + MLT2F LTR ERVL 280 661 -2 311 341 86 20 chr3 156947626 156947881 -61089277 - L1 LINE L1 -1633 4513 4242 970 204 67 32 chr3 156948710 156948948 -61088210 + MER58B DNA MER1_type 47 298 -2122 804 181 0 0 chr3 156948948 156949081 -61088077 + FLAM_A SINE Alu 1 133 0 970 204 67 32 chr3 156949081 156949127 -61088031 + MER58B DNA MER1_type 298 341 0 282 237 0 0 chr3 156949195 156949254 -61087904 - MER20 DNA MER1_type -152 67 9 202 305 0 17 chr3 156949281 156949340 -61087818 + G-rich Low_complexity Low_complexity 4 61 0 416 236 31 8 chr3 156949882 156950009 -61087149 - LTR37B LTR ERV1 -12 456 327 516 219 9 163 chr3 156950012 156950227 -61086931 - MER82 DNA MER2_type 0 653 472 237 185 11 76 chr3 156950238 156950330 -61086828 - LTR37B LTR ERV1 -148 320 235 683 218 67 11 chr3 156952103 156952282 -61084876 + MER5A DNA MER1_type 1 189 0 392 274 179 33 chr3 156952871 156953290 -61083868 + MLT1J LTR MaLR 1 480 -31 234 213 27 93 chr3 156953377 156953452 -61083706 + L2 LINE L2 3244 3313 0 206 313 16 31 chr3 156953905 156953969 -61083189 - L2 LINE L2 -5 3267 3205 264 330 11 0 chr3 156954115 156954203 -61082955 + MIR SINE MIR 153 241 -21 244 206 27 41 chr3 156955090 156955163 -61081995 + CT-rich Low_complexity Low_complexity 4 75 0 450 229 61 69 chr3 156956012 156956143 -61081015 + MER91B DNA MER1_type 1 130 -60 218 271 21 83 chr3 156956169 156956265 -61080893 + MER91B DNA MER1_type 100 189 -1 239 273 15 15 chr3 156956927 156956993 -61080165 - L2 LINE L2 -8 3264 3199 651 23 0 35 chr3 156958342 156958429 -61078729 + AluY SINE Alu 1 84 -227 440 106 11 0 chr3 156958534 156958621 -61078537 + L1P LINE L1 4942 5028 -1118 260 388 0 25 chr3 156958746 156958867 -61078291 - MIR SINE MIR -104 158 41 23 0 0 0 chr3 156959104 156959127 -61078031 + AT_rich Low_complexity Low_complexity 1 23 0 213 39 0 0 chr3 156960868 156960894 -61076264 + (TTTTTG)n Simple_repeat Simple_repeat 5 30 0 210 37 0 0 chr3 156960993 156961020 -61076138 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 222 333 25 12 chr3 156961123 156961204 -61075954 - L2 LINE L2 -2 3270 3189 24 32 0 0 chr3 156961360 156961391 -61075767 + AT_rich Low_complexity Low_complexity 1 31 0 309 275 203 7 chr3 156961650 156961788 -61075370 + L1M4 LINE L1 4457 4621 -1525 490 164 57 101 chr3 156961801 156961849 -61075309 - L1MA9 LINE L1 0 6312 6263 2298 95 7 0 chr3 156961849 156962143 -61075015 - AluSc SINE Alu -13 296 1 490 164 57 101 chr3 156962143 156962253 -61074905 - L1MA9 LINE L1 -49 6263 6161 191 163 0 23 chr3 156962253 156962296 -61074862 + CT-rich Low_complexity Low_complexity 4 45 0 928 132 10 6 chr3 156962298 156962475 -61074683 - L1MA9 LINE L1 -14 6175 5993 434 109 0 0 chr3 156962475 156962539 -61074619 + L1M1 LINE L1 5559 5622 -680 * 974 117 0 117 chr3 156962537 156962660 -61074498 - L1MA9 LINE L1 -526 5786 5693 6361 78 34 0 chr3 156962660 156963579 -61073579 + L1PA10 LINE L1 5215 6164 -4 974 117 0 117 chr3 156963579 156963651 -61073507 - L1MA9 LINE L1 -619 5693 5614 5549 191 72 31 chr3 156963657 156965293 -61071865 + L1M2 LINE L1 2839 4542 -1604 963 243 9 18 chr3 156965293 156965519 -61071639 + AluJo SINE Alu 3 226 -86 3974 188 48 3 chr3 156965539 156966576 -61070582 + L1M2 LINE L1 4533 5614 -698 273 267 33 20 chr3 156966578 156966728 -61070430 - Charlie7 DNA MER1_type -15 2597 2446 297 327 0 0 chr3 156966730 156966837 -61070321 - Charlie7 DNA MER1_type -2504 108 2 2158 61 40 4 chr3 156967762 156968040 -61069118 + AluY SINE Alu 1 288 -23 215 253 189 11 chr3 156969351 156969446 -61067712 + MER5A DNA MER1_type 2 113 -76 269 230 122 0 chr3 156970406 156970480 -61066678 + MLT1J LTR MaLR 1 83 -428 22 0 0 0 chr3 156970845 156970867 -61066291 + AT_rich Low_complexity Low_complexity 1 22 0 22 99 0 0 chr3 156971148 156971219 -61065939 + AT_rich Low_complexity Low_complexity 1 71 0 650 229 70 40 chr3 156971247 156971448 -61065710 + MER63A DNA MER1_type 2 208 -2 2431 118 22 0 chr3 156972004 156972360 -61064798 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr3 156972611 156972634 -61064524 + AT_rich Low_complexity Low_complexity 1 23 0 666 211 173 0 chr3 156973600 156973756 -61063402 + MER58A DNA MER1_type 42 224 0 187 233 23 105 chr3 156974548 156974634 -61062524 + MIR SINE MIR 86 164 -98 181 197 174 91 chr3 156974674 156974806 -61062352 - MIR SINE MIR 0 262 120 693 295 75 18 chr3 156974812 156975039 -61062119 - MIR SINE MIR -21 241 2 894 158 38 11 chr3 156976731 156976914 -61060244 - MER53 DNA DNA 0 189 2 497 230 86 69 chr3 156977122 156977296 -61059862 - MER5B DNA MER1_type 0 178 2 1501 294 150 14 chr3 156977552 156978506 -61058652 - L2 LINE L2 0 3313 2218 23 86 0 0 chr3 156978907 156978965 -61058193 + AT_rich Low_complexity Low_complexity 1 58 0 319 357 83 1 chr3 156979083 156979239 -61057919 + MIR3 SINE MIR 42 207 -31 550 171 29 9 chr3 156979848 156979953 -61057205 - ERVL LTR ERVL -954 4810 4704 340 125 107 0 chr3 156979955 156980011 -61057147 + ERVL LTR ERVL 4805 4866 -898 1180 197 44 109 chr3 156980016 156980401 -61056757 - MLT1A1 LTR MaLR -5 360 1 395 164 0 0 chr3 156980408 156980469 -61056689 + ERVL LTR ERVL 4872 4932 -832 961 222 50 35 chr3 156980469 156980730 -61056428 + MLT1C LTR MaLR 200 464 -3 22 0 0 0 chr3 156981394 156981416 -61055742 + AT_rich Low_complexity Low_complexity 1 22 0 392 213 49 41 chr3 156982068 156982190 -61054968 - MLT1J2 LTR MaLR -247 203 81 313 346 60 11 chr3 156982636 156982821 -61054337 - HAL1b LINE L1 -673 675 482 272 241 78 50 chr3 156982867 156983008 -61054150 - HAL1b LINE L1 -953 395 251 1478 273 93 10 chr3 156983538 156984227 -61052931 + L1MEc LINE L1 1012 1757 -4639 2995 218 139 20 chr3 156984250 156985154 -61052004 + Charlie1 DNA MER1_type 577 1588 -1173 1394 170 0 88 chr3 156985182 156985476 -61051682 + AluJo SINE Alu 7 274 -38 575 233 201 4 chr3 156985500 156985749 -61051409 + Charlie1 DNA MER1_type 1631 1928 -833 408 108 48 0 chr3 156985847 156985930 -61051228 - MER69 DNA AcHobo -44 2482 2396 2260 237 82 21 chr3 156986228 156987090 -61050068 - L1ME3A LINE L1 -68 6102 5184 2059 196 61 59 chr3 156987183 156987294 -61049864 + MER77 LTR ERV1 53 162 -443 2068 168 75 15 chr3 156987294 156987694 -61049464 - MSTA LTR MaLR -4 424 1 2059 196 61 59 chr3 156987694 156988123 -61049035 + MER77 LTR ERV1 162 594 -11 824 281 85 39 chr3 156988128 156988544 -61048614 - L1ME3A LINE L1 -1063 5083 4623 1786 171 7 0 chr3 156988544 156988849 -61048309 - AluJb SINE Alu -5 307 1 824 281 85 39 chr3 156988849 156989100 -61048058 - L1ME3A LINE L1 -1523 4623 4385 1556 183 43 4 chr3 156989321 156989475 -61047683 - AluJb SINE Alu -20 292 121 237 33 0 0 chr3 156989475 156989505 -61047653 + (TG)n Simple_repeat Simple_repeat 2 31 0 1556 183 43 4 chr3 156989505 156989629 -61047529 - AluJb SINE Alu -191 121 3 22 0 0 0 chr3 156989636 156989658 -61047500 + AT_rich Low_complexity Low_complexity 1 22 0 191 224 0 41 chr3 156991017 156991066 -61046092 + L2 LINE L2 3115 3161 -111 532 304 91 16 chr3 156991751 156991810 -61045348 + L2 LINE L2 2351 2404 -910 1275 149 152 65 chr3 156991810 156992146 -61045012 + MLT1A1 LTR MaLR 1 365 0 532 304 91 16 chr3 156992146 156992339 -61044819 + L2 LINE L2 2404 2622 -692 330 276 81 0 chr3 156992449 156992536 -61044622 + Charlie2 DNA MER1_type 207 300 -2562 1133 217 159 38 chr3 156992548 156993051 -61044107 + Charlie2 DNA MER1_type 1867 2450 -412 1112 198 68 0 chr3 156993051 156993273 -61043885 + MER8 DNA MER2_type 1 237 -2 1133 217 159 38 chr3 156993273 156993346 -61043812 + Charlie2 DNA MER1_type 2450 2513 -349 1067 181 23 5 chr3 156993356 156993571 -61043587 - MER20 DNA MER1_type 0 219 1 487 199 90 13 chr3 156993616 156993772 -61043386 + Charlie2 DNA MER1_type 2617 2784 -78 2215 82 0 7 chr3 156993834 156994127 -61043031 - AluSc SINE Alu -18 291 1 24 0 0 0 chr3 156996747 156996771 -61040387 + GC_rich Low_complexity Low_complexity 1 24 0 344 306 55 87 chr3 156997139 156997450 -61039708 + L1M2 LINE L1 526 826 -6023 314 125 62 0 chr3 156999498 156999546 -61037612 - Tigger1 DNA MER2_type -2074 344 294 249 299 68 17 chr3 156999996 157000113 -61037045 + L2 LINE L2 3158 3280 -33 1555 147 42 25 chr3 157000974 157001260 -61035898 - MER47A DNA MER2_type 0 366 76 2589 33 7 3 chr3 157001418 157001722 -61035436 + AluY SINE Alu 1 305 -6 315 89 0 36 chr3 157002172 157002228 -61034930 - L1MB7 LINE L1 -51 6133 6080 229 298 78 107 chr3 157002964 157003077 -61034081 + L2 LINE L2 2724 2839 -433 2035 138 13 3 chr3 157003077 157003375 -61033783 - AluJb SINE Alu -11 301 1 229 298 78 107 chr3 157003375 157003569 -61033589 + L2 LINE L2 2839 3021 -251 25 31 0 0 chr3 157003693 157003725 -61033433 + AT_rich Low_complexity Low_complexity 1 32 0 232 388 75 9 chr3 157003955 157004169 -61032989 + L2 LINE L2 2835 3062 -210 22 0 0 0 chr3 157005275 157005297 -61031861 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 157005402 157005424 -61031734 + AT_rich Low_complexity Low_complexity 1 22 0 324 256 35 0 chr3 157006265 157006351 -61030807 - L2 LINE L2 -1 3271 3183 299 258 123 27 chr3 157007573 157007777 -61029381 - L1MC5 LINE L1 -44 7917 7681 2207 102 0 7 chr3 157007777 157008080 -61029078 - AluSx SINE Alu -11 301 1 299 258 123 27 chr3 157008080 157008135 -61029023 - L1MC5 LINE L1 -280 7681 7633 637 246 133 27 chr3 157008337 157008596 -61028562 + L1MC4 LINE L1 6972 7223 -738 237 179 74 105 chr3 157008655 157008750 -61028408 + L1MC5 LINE L1 7249 7340 -621 533 233 132 18 chr3 157008907 157009126 -61028032 + L1MC5 LINE L1 7269 7512 -449 181 260 140 0 chr3 157009391 157009441 -61027717 - MIR SINE MIR -90 118 62 21 0 0 0 chr3 157010867 157010888 -61026270 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr3 157011714 157011739 -61025419 + (TG)n Simple_repeat Simple_repeat 1 25 0 * 270 0 0 0 chr3 157011738 157011768 -61025390 + (GA)n Simple_repeat Simple_repeat 1 30 0 346 240 0 0 chr3 157012018 157012093 -61025065 + MIR SINE MIR 185 259 -3 226 246 188 0 chr3 157012406 157012475 -61024683 + MIR3 SINE MIR 112 193 -15 216 67 0 0 chr3 157012502 157012532 -61024626 + (TTG)n Simple_repeat Simple_repeat 2 31 0 717 92 0 0 chr3 157013764 157013884 -61023274 + (TA)n Simple_repeat Simple_repeat 1 120 0 377 301 24 8 chr3 157014037 157014160 -61022998 + MIR SINE MIR 68 192 -70 309 247 14 0 chr3 157014232 157014305 -61022853 - L3 LINE CR1 -155 1422 1349 2105 91 18 4 chr3 157015473 157015749 -61021409 - AluSx SINE Alu -32 280 1 22 35 0 0 chr3 157016043 157016072 -61021086 + AT_rich Low_complexity Low_complexity 1 29 0 194 324 120 34 chr3 157016513 157016707 -61020451 + L2 LINE L2 2795 3019 -253 264 137 0 0 chr3 157016846 157016897 -61020261 + (CAAAAA)n Simple_repeat Simple_repeat 4 54 0 218 306 0 0 chr3 157017012 157017061 -61020097 + MIR SINE MIR 60 108 -154 8674 115 46 16 chr3 157017553 157018998 -61018160 + L1P LINE L1 1760 3247 -2899 2645 141 44 17 chr3 157019075 157019557 -61017601 - Tigger1 DNA MER2_type -1421 997 503 29 0 0 0 chr3 157019745 157019774 -61017384 + AT_rich Low_complexity Low_complexity 1 29 0 238 292 135 11 chr3 157020467 157020556 -61016602 + MIR SINE MIR 33 132 -76 225 186 163 0 chr3 157021484 157021527 -61015631 - MER58 DNA MER1_type -161 54 5 5443 126 54 7 chr3 157021739 157022762 -61014396 - L1PA14 LINE L1 0 6161 5112 259 292 41 7 chr3 157022767 157022901 -61014257 - L1MC/D LINE L1 -536 5585 5469 371 152 25 40 chr3 157023541 157023696 -61013462 - HsTC2 DNA Tc2 -104 1794 1608 296 45 159 0 chr3 157023721 157023765 -61013393 - MADE1 DNA Mariner -29 51 1 1341 191 33 4 chr3 157023765 157024217 -61012941 - L1MB4 LINE L1 -60 6120 5575 334 88 18 0 chr3 157024650 157024707 -61012451 + L1PA16 LINE L1 6100 6157 -9 470 294 70 7 chr3 157024783 157024926 -61012232 - MIR SINE MIR -98 164 13 386 212 219 36 chr3 157025957 157026094 -61011064 - MER69A DNA AcHobo 0 177 16 1773 110 4 8 chr3 157026156 157026401 -61010757 - AluSx SINE Alu -65 247 4 343 172 50 91 chr3 157026607 157026706 -61010452 - L1MC3 LINE L1 -1430 6355 6261 1011 243 82 47 chr3 157026783 157027300 -61009858 + MLT1H LTR MaLR 10 585 -5 1726 150 3 55 chr3 157027777 157028103 -61009055 + AluJb SINE Alu 1 309 -3 279 0 0 0 chr3 157028131 157028162 -61008996 + (TG)n Simple_repeat Simple_repeat 2 32 0 2145 137 0 0 chr3 157029200 157029500 -61007658 - AluSx SINE Alu -12 300 1 933 158 42 0 chr3 157030944 157031109 -61006049 - MER3 DNA MER1_type -1 208 37 501 291 87 50 chr3 157032165 157032488 -61004670 + L2 LINE L2 2977 3311 -2 883 147 0 0 chr3 157033322 157033451 -61003707 + AluSg/x SINE Alu 155 283 -27 305 130 0 0 chr3 157033451 157033497 -61003661 + Alu SINE Alu 238 283 -17 437 97 0 0 chr3 157033497 157033569 -61003589 + Alu SINE Alu 237 308 -1 579 207 0 16 chr3 157034327 157034448 -61002710 + L1ME1 LINE L1 39 157 -6239 * 1393 263 131 12 chr3 157034444 157035129 -61002029 + L1ME1 LINE L1 707 1473 -4923 1843 243 37 37 chr3 157035256 157035766 -61001392 - L1MDa LINE L1 -6014 526 17 2655 239 56 36 chr3 157035769 157036788 -61000370 + L1ME1 LINE L1 4918 5969 -266 1407 243 27 44 chr3 157036788 157037262 -60999896 + MLT1C LTR MaLR 2 467 0 2655 239 56 36 chr3 157037262 157037533 -60999625 + L1ME1 LINE L1 5969 6233 -2 728 208 46 17 chr3 157037706 157037879 -60999279 + FRAM SINE Alu 1 170 -6 641 262 105 9 chr3 157037879 157038089 -60999069 + MER102a DNA MER1_type 100 329 -1 3882 142 21 5 chr3 157039099 157039763 -60997395 + L1MC1 LINE L1 5659 6333 0 363 331 94 6 chr3 157039814 157039974 -60997184 + MIR SINE MIR 23 196 -66 388 319 117 34 chr3 157040836 157041187 -60995971 + MLT1L LTR MaLR 221 600 -15 197 333 61 39 chr3 157042108 157042288 -60994870 + L2 LINE L2 2259 2442 -872 24 0 0 0 chr3 157043242 157043266 -60993892 + AT_rich Low_complexity Low_complexity 1 24 0 363 232 123 26 chr3 157043339 157043494 -60993664 + L1ME4a LINE L1 5952 6121 0 512 183 241 29 chr3 157043729 157043866 -60993292 - AluJo SINE Alu 0 302 137 2523 119 3 0 chr3 157043866 157044220 -60992938 - THE1A LTR MaLR 0 355 1 11052 118 8 2 chr3 157044220 157045777 -60991381 - THE1A-int LTR MaLR 0 1580 15 2736 81 3 0 chr3 157045777 157046125 -60991033 - THE1A LTR MaLR 0 355 7 20819 75 8 2 chr3 157046148 157048891 -60988267 - L1PA5 LINE L1 -3377 2769 11 20376 43 23 0 chr3 157048893 157052233 -60984925 + L1PA5 LINE L1 2787 6147 -7 677 189 16 0 chr3 157052238 157052365 -60984793 - AluJo SINE Alu -169 133 5 754 276 40 25 chr3 157052400 157052723 -60984435 + L1MC4a LINE L1 5616 5943 -1865 656 302 145 36 chr3 157052846 157053629 -60983529 + L2 LINE L2 2444 3313 0 354 156 0 0 chr3 157053854 157053918 -60983240 + (TG)n Simple_repeat Simple_repeat 2 65 0 324 78 59 0 chr3 157054226 157054277 -60982881 - Alu SINE Alu -5 297 244 1581 171 50 4 chr3 157054394 157054674 -60982484 - AluSx SINE Alu -19 293 1 554 128 15 23 chr3 157054737 157054870 -60982288 + (TCTA)n Simple_repeat Simple_repeat 1 132 0 551 51 13 0 chr3 157054901 157054980 -60982178 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 670 280 72 48 chr3 157055790 157056454 -60980704 - L1MC5 LINE L1 -20 7941 7262 24 32 0 0 chr3 157057908 157057939 -60979219 + AT_rich Low_complexity Low_complexity 1 31 0 547 273 25 85 chr3 157058919 157059238 -60977920 + MER102a DNA MER1_type 26 325 -5 282 229 12 0 chr3 157061857 157061940 -60975218 + (TAA)n Simple_repeat Simple_repeat 3 86 0 223 52 17 69 chr3 157061940 157061998 -60975160 + (TTATA)n Simple_repeat Simple_repeat 5 59 0 2156 145 30 0 chr3 157062029 157062367 -60974791 + MER7A DNA MER2_type 1 346 0 240 309 31 41 chr3 157062448 157062545 -60974613 + L2 LINE L2 3168 3263 -9 380 20 20 0 chr3 157063069 157063118 -60974040 + (CA)n Simple_repeat Simple_repeat 1 50 0 831 198 148 64 chr3 157063225 157063679 -60973479 - L1MC5 LINE L1 -50 7911 7420 372 329 88 75 chr3 157064757 157065613 -60971545 + L2 LINE L2 2398 3261 -11 871 245 25 5 chr3 157066446 157066650 -60970508 + MIR SINE MIR 34 241 -21 191 290 58 29 chr3 157066859 157066928 -60970230 - MIR SINE MIR -103 105 35 29 47 0 0 chr3 157068470 157068513 -60968645 + AT_rich Low_complexity Low_complexity 1 43 0 613 320 90 4 chr3 157068804 157069082 -60968076 - L1MC4 LINE L1 -1040 7002 6701 21 0 0 0 chr3 157069324 157069345 -60967813 + AT_rich Low_complexity Low_complexity 1 21 0 692 186 128 169 chr3 157070805 157071195 -60965963 - LTR37B LTR ERV1 0 468 98 1657 188 3 0 chr3 157071195 157071482 -60965676 - AluJb SINE Alu -24 288 1 692 186 128 169 chr3 157071482 157071553 -60965605 - LTR37B LTR ERV1 -370 98 26 2342 89 7 0 chr3 157071571 157071874 -60965284 - AluSx SINE Alu -7 305 1 21 57 0 0 chr3 157071951 157071986 -60965172 + AT_rich Low_complexity Low_complexity 1 35 0 29 0 0 0 chr3 157072181 157072210 -60964948 + AT_rich Low_complexity Low_complexity 1 29 0 232 226 0 0 chr3 157073181 157073234 -60963924 + CT-rich Low_complexity Low_complexity 2 54 0 313 273 80 40 chr3 157074282 157074432 -60962726 + MIR SINE MIR 95 250 -12 2997 154 74 25 chr3 157075496 157076105 -60961053 - L1MC3 LINE L1 -18 7767 7129 285 287 17 9 chr3 157076177 157076292 -60960866 - L1ME4a LINE L1 -212 5909 5794 284 265 0 0 chr3 157076618 157076686 -60960472 + LTR37B LTR ERV1 7 74 -394 950 188 100 16 chr3 157076760 157077010 -60960148 + LTR37B LTR ERV1 198 468 0 910 198 4 117 chr3 157077360 157077607 -60959551 + MER58A DNA MER1_type 1 219 -5 2239 98 3 0 chr3 157077685 157077980 -60959178 + AluSx SINE Alu 1 296 -16 26 0 0 0 chr3 157078100 157078126 -60959032 + AT_rich Low_complexity Low_complexity 1 26 0 2221 109 3 0 chr3 157079351 157079653 -60957505 + AluSx SINE Alu 1 303 -9 388 201 271 21 chr3 157081389 157081533 -60955625 + MER5A DNA MER1_type 10 189 0 2291 110 0 0 chr3 157082283 157082593 -60954565 - AluSg SINE Alu 0 310 1 497 331 44 17 chr3 157083655 157083962 -60953196 + Charlie8 DNA MER1_type 1 1419 -998 654 157 0 0 chr3 157085909 157086017 -60951141 + FRAM SINE Alu 38 145 -31 333 68 0 0 chr3 157086020 157086064 -60951094 + (CGGGA)n Simple_repeat Simple_repeat 4 47 0 470 252 92 17 chr3 157086214 157086508 -60950650 - L1ME4a LINE L1 -177 5944 5629 217 343 30 0 chr3 157086509 157086608 -60950550 + L2 LINE L2 1872 1973 -1341 364 322 111 19 chr3 157086656 157086926 -60950232 + L2 LINE L2 2148 2442 -872 838 257 132 29 chr3 157087133 157087405 -60949753 - MER92C LTR ERV1 -254 300 1 322 325 98 0 chr3 157087405 157087528 -60949630 + L2 LINE L2 2620 2754 -560 1841 193 42 53 chr3 157088310 157088781 -60948377 + MER31B LTR ERV1 1 466 0 27 0 0 0 chr3 157088975 157089002 -60948156 + AT_rich Low_complexity Low_complexity 1 27 0 225 65 0 0 chr3 157089272 157089303 -60947855 + (TG)n Simple_repeat Simple_repeat 1 31 0 327 335 29 40 chr3 157089480 157089653 -60947505 - MIR SINE MIR -44 218 48 28 29 0 0 chr3 157090850 157090885 -60946273 + AT_rich Low_complexity Low_complexity 1 35 0 1201 252 61 48 chr3 157091499 157091955 -60945203 - LTR16B LTR ERVL -2 462 1 276 313 140 29 chr3 157092053 157092296 -60944862 + L2 LINE L2 2509 2778 -536 755 224 11 17 chr3 157092298 157092472 -60944686 + FRAM SINE Alu 2 174 -2 1957 145 7 0 chr3 157093209 157093506 -60943652 + AluSx SINE Alu 1 299 -13 324 0 0 0 chr3 157093548 157093584 -60943574 + (TG)n Simple_repeat Simple_repeat 2 37 0 239 222 0 0 chr3 157093733 157093778 -60943380 + CT-rich Low_complexity Low_complexity 1 45 0 208 297 16 0 chr3 157093778 157093842 -60943316 - L2 LINE L2 -5 3308 3244 21 0 0 0 chr3 157093991 157094012 -60943146 + AT_rich Low_complexity Low_complexity 1 21 0 2007 124 0 3 chr3 157094123 157094413 -60942745 + AluSx SINE Alu 4 292 -20 530 182 4 222 chr3 157094549 157094774 -60942384 - MER5B DNA MER1_type -1 177 2 4185 190 26 20 chr3 157094785 157095673 -60941485 - L1MB3 LINE L1 -2 6181 5289 797 261 110 41 chr3 157095977 157096493 -60940665 - MLT1H LTR MaLR -4 563 1 4289 89 40 8 chr3 157096519 157097611 -60939547 - MER11A LTR ERVK 0 1266 1 240 358 41 8 chr3 157098122 157098245 -60938913 + MIR SINE MIR 16 142 -66 222 37 0 0 chr3 157099102 157099129 -60938029 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 395 204 34 23 chr3 157099890 157099978 -60937180 + MIR SINE MIR 65 153 -109 2699 123 31 0 chr3 157099982 157100397 -60936761 + MSTC LTR MaLR 1 428 0 213 94 0 0 chr3 157100510 157100542 -60936616 + (A)n Simple_repeat Simple_repeat 1 32 0 23 54 0 0 chr3 157101623 157101660 -60935498 + AT_rich Low_complexity Low_complexity 1 37 0 382 348 56 0 chr3 157101678 157101856 -60935302 - MIR3 SINE MIR -14 194 7 246 247 41 10 chr3 157102176 157102273 -60934885 + Charlie7 DNA MER1_type 53 152 -2460 379 274 0 0 chr3 157102278 157102380 -60934778 + Charlie7 DNA MER1_type 2508 2609 -3 24 32 0 0 chr3 157103509 157103540 -60933618 + AT_rich Low_complexity Low_complexity 1 31 0 279 318 67 41 chr3 157103676 157103943 -60933215 + MLT1H LTR MaLR 13 286 -263 1553 239 66 30 chr3 157103975 157104441 -60932717 + MLT2B1 LTR ERVL 1 488 -32 294 50 0 0 chr3 157104441 157104481 -60932677 + (CA)n Simple_repeat Simple_repeat 2 41 0 1553 239 66 30 chr3 157104481 157104516 -60932642 + MLT2B1 LTR ERVL 488 520 0 312 368 5 61 chr3 157104575 157104787 -60932371 - MIR SINE MIR -56 206 7 4007 160 4 6 chr3 157105940 157106647 -60930511 - L1PA11 LINE L1 -1187 4959 4254 6129 104 7 13 chr3 157106647 157107867 -60929291 + L1PA11 LINE L1 4947 6158 -16 396 0 0 0 chr3 157108104 157108148 -60929010 + (CA)n Simple_repeat Simple_repeat 2 45 0 189 389 48 29 chr3 157108279 157108487 -60928671 + L2 LINE L2 2288 2499 -815 248 307 45 0 chr3 157108613 157108701 -60928457 + L2 LINE L2 2549 2640 -674 306 288 108 2 chr3 157108773 157108885 -60928273 - MIR SINE MIR -74 134 11 292 221 78 0 chr3 157109544 157109621 -60927537 + Charlie7 DNA MER1_type 19 101 -2511 1081 315 64 20 chr3 157110577 157111269 -60925889 - L1MC4a LINE L1 -707 5447 5301 300 333 50 0 chr3 157111686 157111827 -60925331 + L1MC4a LINE L1 5877 6024 -1784 216 275 116 0 chr3 157111962 157112031 -60925127 - MIR SINE MIR -63 145 70 1433 265 45 27 chr3 157112100 157112587 -60924571 + MLT1L LTR MaLR 113 608 -7 1607 217 58 16 chr3 157112956 157112995 -60924163 - L1 LINE L1 -1847 4299 4263 249 33 0 0 chr3 157112995 157113025 -60924133 + (TG)n Simple_repeat Simple_repeat 2 31 0 1607 217 58 16 chr3 157113025 157113432 -60923726 - L1 LINE L1 -1883 4263 3834 205 288 68 83 chr3 157113928 157114060 -60923098 + L2 LINE L2 3184 3313 0 23 68 0 0 chr3 157114486 157114530 -60922628 + AT_rich Low_complexity Low_complexity 1 44 0 638 311 43 57 chr3 157114577 157115014 -60922144 - LTR16B LTR ERVL 0 464 34 1281 170 55 143 chr3 157115214 157115614 -60921544 - MLT1A1 LTR MaLR 0 365 1 312 298 114 48 chr3 157115822 157116050 -60921108 - MIR SINE MIR 0 262 20 1347 112 0 10 chr3 157116515 157116721 -60920437 + L1PA13 LINE L1 5959 6162 -1 23 54 0 0 chr3 157116896 157116933 -60920225 + AT_rich Low_complexity Low_complexity 1 37 0 362 279 56 60 chr3 157117274 157117838 -60919320 - L1ME LINE L1 -703 5461 4903 1601 205 15 15 chr3 157117860 157118201 -60918957 + MLT2D LTR ERVL 6 346 -68 233 57 29 0 chr3 157118210 157118245 -60918913 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 2239 140 36 14 chr3 157118276 157118632 -60918526 + THE1B LTR MaLR 1 364 0 402 293 133 0 chr3 157118648 157118965 -60918193 - L1ME LINE L1 -1281 4865 4507 524 322 11 49 chr3 157119150 157119414 -60917744 + MLT1J LTR MaLR 30 283 -228 242 313 33 52 chr3 157119609 157119897 -60917261 - L1 LINE L1 -2374 3772 3489 2151 96 0 3 chr3 157119897 157120188 -60916970 - AluY SINE Alu -21 290 1 242 313 33 52 chr3 157120188 157120206 -60916952 - L1 LINE L1 -2657 3489 3472 381 250 109 8 chr3 157121347 157121475 -60915683 - MIR SINE MIR -1 261 121 6485 184 116 25 chr3 157123700 157125238 -60911920 + MER52A LTR ERV1 1 1755 0 621 40 0 0 chr3 157125437 157125513 -60911645 + (TG)n Simple_repeat Simple_repeat 1 76 0 180 214 11 22 chr3 157126134 157126223 -60910935 + (TA)n Simple_repeat Simple_repeat 1 88 0 1110 144 0 6 chr3 157126674 157126855 -60910303 + THE1C LTR MaLR 9 188 -187 198 0 0 0 chr3 157127531 157127553 -60909605 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 387 219 6 12 chr3 157128305 157128465 -60908693 + GA-rich Low_complexity Low_complexity 2 160 0 433 325 49 32 chr3 157128970 157129216 -60907942 + MIR SINE MIR 10 259 -3 919 219 11 0 chr3 157129859 157130046 -60907112 - MER5A DNA MER1_type 0 189 1 520 297 76 21 chr3 157132956 157133192 -60903966 + MIR SINE MIR 8 256 -6 792 146 113 121 chr3 157133244 157133484 -60903674 - L1MC3 LINE L1 -848 6937 6700 3117 185 45 9 chr3 157133514 157134200 -60902958 - L1MC3 LINE L1 -9 7776 7066 2365 98 3 0 chr3 157135561 157135899 -60901259 + AluSp SINE Alu 1 339 0 721 43 0 3 chr3 157136007 157136241 -60900917 + AluY SINE Alu 1 309 -2 881 237 35 9 chr3 157136581 157136809 -60900349 - MER110 LTR ERV1 -9 482 249 633 325 89 39 chr3 157136895 157137394 -60899764 + L2 LINE L2 2765 3300 -13 380 254 75 22 chr3 157137428 157137562 -60899596 + L1MC/D LINE L1 5559 5699 -422 1090 262 119 27 chr3 157137569 157138080 -60899078 + MER68 LTR ERV1 5 562 0 207 114 0 0 chr3 157138478 157138513 -60898645 + (TTAAA)n Simple_repeat Simple_repeat 1 35 0 475 229 15 15 chr3 157138513 157138644 -60898514 - MER3 DNA MER1_type -78 131 1 413 314 0 14 chr3 157139815 157139955 -60897203 + LTR16C LTR ERVL 352 489 -2 361 363 60 39 chr3 157139956 157140240 -60896918 - L2 LINE L2 -1320 1994 1705 406 255 43 76 chr3 157140342 157140526 -60896632 + MLT1K LTR MaLR 388 565 -23 411 21 0 0 chr3 157140589 157140637 -60896521 + (CA)n Simple_repeat Simple_repeat 1 48 0 349 218 52 122 chr3 157140797 157141026 -60896132 - L1MC4 LINE L1 -1 8041 7829 519 270 169 0 chr3 157142388 157142566 -60894592 - MIR SINE MIR -6 256 49 1334 193 85 67 chr3 157142574 157142963 -60894195 + MSTD LTR MaLR 1 396 0 580 336 42 33 chr3 157143028 157143361 -60893797 + L2 LINE L2 2510 2845 -469 389 130 14 0 chr3 157143407 157143476 -60893682 + L1MA6 LINE L1 6123 6192 -108 342 247 12 24 chr3 157143691 157143776 -60893382 + L2 LINE L2 3189 3272 0 494 322 70 17 chr3 157144594 157144892 -60892266 - MLT1I LTR MaLR 0 409 96 2127 129 44 3 chr3 157145311 157145652 -60891506 + THE1A LTR MaLR 1 355 0 207 0 0 0 chr3 157146034 157146057 -60891101 + (TA)n Simple_repeat Simple_repeat 1 23 0 207 0 0 0 chr3 157146057 157146080 -60891078 + (T)n Simple_repeat Simple_repeat 1 23 0 796 258 110 60 chr3 157147278 157147622 -60889536 - L1ME4a LINE L1 -227 5894 5506 2353 104 0 0 chr3 157147622 157147929 -60889229 - AluSx SINE Alu -5 307 1 796 258 110 60 chr3 157147929 157148184 -60888974 - L1ME4a LINE L1 -615 5506 5265 204 259 32 96 chr3 157148302 157148396 -60888762 + MIR3 SINE MIR 75 163 -45 21 0 0 0 chr3 157149039 157149060 -60888098 + AT_rich Low_complexity Low_complexity 1 21 0 758 256 75 35 chr3 157150236 157150463 -60886695 - MIR SINE MIR 0 262 27 759 229 31 57 chr3 157151744 157152094 -60885064 + MER113 DNA MER1_type? 73 413 -108 2258 65 0 3 chr3 157152109 157152400 -60884758 - L1PA6 LINE L1 -2 6152 5863 1577 45 0 0 chr3 157152400 157152600 -60884558 + L1PA6 LINE L1 5660 5859 -295 879 237 32 36 chr3 157153071 157153356 -60883802 - MLT1D LTR MaLR 0 505 194 1131 239 51 18 chr3 157153401 157153735 -60883423 - MLT1A1 LTR MaLR -20 345 1 575 265 28 17 chr3 157153740 157153921 -60883237 - MLT1D LTR MaLR -322 183 1 567 268 98 0 chr3 157153974 157154127 -60883031 - MIR SINE MIR -29 233 66 196 311 14 27 chr3 157157229 157157303 -60879855 + MIR SINE MIR 75 147 -61 1958 170 18 67 chr3 157158134 157158387 -60878771 - MSTB LTR MaLR 0 426 201 2166 103 0 26 chr3 157158387 157158697 -60878461 - AluY SINE Alu -9 302 1 1958 170 18 67 chr3 157158697 157158879 -60878279 - MSTB LTR MaLR -225 201 12 656 131 0 10 chr3 157158889 157158988 -60878170 + FLAM_C SINE Alu 21 118 -25 23 68 0 0 chr3 157159092 157159136 -60878022 + AT_rich Low_complexity Low_complexity 1 44 0 229 258 81 81 chr3 157159844 157160030 -60877128 + MLT1L LTR MaLR 207 392 -223 421 244 79 8 chr3 157160326 157160453 -60876705 - MIR SINE MIR -70 192 57 205 236 28 69 chr3 157161088 157161160 -60875998 - L2 LINE L2 -35 3237 3169 21 0 0 0 chr3 157161442 157161463 -60875695 + AT_rich Low_complexity Low_complexity 1 21 0 249 167 0 0 chr3 157161494 157161536 -60875622 - L2 LINE L2 -307 2965 2924 431 203 318 47 chr3 157161915 157162063 -60875095 - MER5A DNA MER1_type -1 188 1 908 162 13 13 chr3 157162239 157162393 -60874765 - AluJb SINE Alu -5 307 154 415 286 14 21 chr3 157162851 157162991 -60874167 + MER5A DNA MER1_type 50 188 -1 208 222 0 22 chr3 157163162 157163207 -60873951 + CT-rich Low_complexity Low_complexity 1 44 0 733 218 35 73 chr3 157163271 157163587 -60873571 - Charlie4a DNA MER1_type -4 504 201 7358 89 5 10 chr3 157163627 157164690 -60872468 - MER11C LTR ERVK -14 1057 1 269 261 100 8 chr3 157164702 157164832 -60872326 - Charlie4a DNA MER1_type -319 189 48 407 326 86 25 chr3 157165654 157166110 -60871048 - MLT1J LTR MaLR -1 449 1 2097 139 0 3 chr3 157166617 157166918 -60870240 - AluSx SINE Alu -12 300 1 485 59 35 12 chr3 157167490 157167575 -60869583 - Tigger7 DNA MER2_type -103 2384 2298 * 1578 200 68 0 chr3 157167571 157167866 -60869292 - Tigger7 DNA MER2_type -415 318 4 805 275 28 5 chr3 157167998 157168216 -60868942 - MIR SINE MIR -5 257 35 1740 167 6 16 chr3 157169542 157169853 -60867305 - AluJo SINE Alu 0 312 5 897 225 62 14 chr3 157169968 157170177 -60866981 + MER20 DNA MER1_type 1 219 0 1487 89 38 5 chr3 157170631 157170844 -60866314 - HSMAR1 DNA Mariner 0 1287 1068 1823 167 3 0 chr3 157171964 157172264 -60864894 - AluJb SINE Alu -10 302 2 317 208 39 34 chr3 157172548 157172655 -60864503 - MIR SINE MIR -76 132 27 234 329 0 0 chr3 157172922 157173001 -60864157 - L2 LINE L2 -527 2787 2709 382 322 91 7 chr3 157174314 157174457 -60862701 + L2 LINE L2 3117 3271 -1 303 327 122 0 chr3 157174586 157174742 -60862416 + MIR SINE MIR 74 248 -14 226 309 167 30 chr3 157175205 157175373 -60861785 + MIR SINE MIR 48 238 -24 502 96 0 36 chr3 157176661 157176744 -60860414 + MADE1 DNA Mariner 1 80 0 445 278 159 13 chr3 157176979 157177130 -60860028 - MER5A DNA MER1_type 0 189 17 303 354 28 21 chr3 157177133 157177277 -60859881 + L1ME3A LINE L1 5792 5936 -234 22 56 0 0 chr3 157177723 157177759 -60859399 + AT_rich Low_complexity Low_complexity 1 36 0 286 292 104 32 chr3 157178268 157178422 -60858736 + L1ME LINE L1 5483 5647 -474 22 0 0 0 chr3 157178436 157178458 -60858700 + AT_rich Low_complexity Low_complexity 1 22 0 578 79 11 0 chr3 157178471 157178560 -60858598 + (TTTC)n Simple_repeat Simple_repeat 4 93 0 743 183 8 0 chr3 157178690 157178816 -60858342 - AluJo SINE Alu -65 247 121 702 166 0 60 chr3 157178819 157178970 -60858188 - FLAM_C SINE Alu -1 142 1 301 290 38 15 chr3 157179046 157179177 -60857981 - LTR16B LTR ERVL -22 442 309 5972 89 26 2 chr3 157179843 157180976 -60856182 + L1PA13 LINE L1 5004 6157 -6 208 217 0 0 chr3 157181821 157181867 -60855291 + (CAAAC)n Simple_repeat Simple_repeat 2 47 0 463 289 31 16 chr3 157181937 157182065 -60855093 + MIR SINE MIR 15 144 -118 207 191 0 21 chr3 157182420 157182467 -60854691 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 228 184 0 0 chr3 157182731 157182780 -60854378 + CT-rich Low_complexity Low_complexity 4 52 0 2591 34 0 0 chr3 157182803 157183096 -60854062 - AluY SINE Alu -15 296 4 325 301 0 0 chr3 157183150 157183243 -60853915 + MIR SINE MIR 38 130 -78 212 267 17 0 chr3 157183667 157183727 -60853431 + GA-rich Low_complexity Low_complexity 2 62 0 490 252 126 28 chr3 157184136 157184279 -60852879 + MIR SINE MIR 8 164 -98 1242 235 62 10 chr3 157184295 157184765 -60852393 + MER77 LTR ERV1 41 595 -10 1480 135 97 84 chr3 157184812 157185182 -60851976 - THE1C LTR MaLR 0 375 1 294 258 22 22 chr3 157185201 157185290 -60851868 + MIR SINE MIR 159 247 -15 453 101 63 13 chr3 157185406 157185485 -60851673 + MER53 DNA DNA 107 189 0 189 400 48 0 chr3 157185501 157185606 -60851552 - MIR SINE MIR -66 142 33 297 286 143 0 chr3 157186074 157186186 -60850972 - MIR3 SINE MIR -51 157 30 216 330 75 0 chr3 157186318 157186424 -60850734 + MIR SINE MIR 12 125 -137 557 238 20 40 chr3 157187308 157187459 -60849699 + MER5B DNA MER1_type 6 153 -25 231 299 37 47 chr3 157187511 157187618 -60849540 - MER5B DNA MER1_type 0 178 73 385 329 65 6 chr3 157187943 157188113 -60849045 - MIR SINE MIR -18 244 65 976 242 57 12 chr3 157188119 157188363 -60848795 - LTR40a LTR ERVL -18 501 247 905 237 138 25 chr3 157188370 157188695 -60848463 + MLT1A1 LTR MaLR 2 363 -2 783 289 62 16 chr3 157188695 157188949 -60848209 - LTR40a LTR ERVL -253 266 1 1711 155 45 45 chr3 157189072 157189447 -60847711 - THE1C LTR MaLR 0 375 1 31 68 0 0 chr3 157189898 157189957 -60847201 + AT_rich Low_complexity Low_complexity 1 59 0 1231 213 90 0 chr3 157190884 157191152 -60846006 + AluJo SINE Alu 1 292 -20 2229 88 0 45 chr3 157191425 157191733 -60845425 + AluSq SINE Alu 1 294 -19 1655 272 87 95 chr3 157192030 157192753 -60844405 + HAL1 LINE L1 22 749 -1758 2484 80 0 0 chr3 157192753 157193054 -60844104 - AluSg SINE Alu -5 305 5 1655 272 87 95 chr3 157193054 157193820 -60843338 + HAL1 LINE L1 749 1499 -1008 792 244 6 0 chr3 157193857 157194033 -60843125 + MER58A DNA MER1_type 47 223 -1 524 305 11 0 chr3 157194038 157194212 -60842946 + HAL1 LINE L1 1529 1704 -803 293 259 199 58 chr3 157194379 157194726 -60842432 + HAL1 LINE L1 1988 2383 -124 2118 172 76 2 chr3 157194727 157195123 -60842035 + MSTB LTR MaLR 1 425 -1 2269 96 3 10 chr3 157195148 157195461 -60841697 - AluSq SINE Alu -2 311 1 313 146 0 0 chr3 157196452 157196500 -60840658 - Alu SINE Alu -10 292 245 24 53 0 0 chr3 157196893 157196931 -60840227 + AT_rich Low_complexity Low_complexity 1 38 0 414 301 111 35 chr3 157197127 157197600 -60839558 + HERVL LTR ERVL 3833 4313 -1172 256 319 109 33 chr3 157197700 157197910 -60839248 + MIR SINE MIR 35 260 -2 412 283 46 20 chr3 157197972 157198124 -60839034 - L2 LINE L2 0 3313 3158 902 367 19 4 chr3 157198294 157198779 -60838379 - L2 LINE L2 -1011 2303 1812 2477 246 80 59 chr3 157199000 157200189 -60836969 - L1MC5 LINE L1 -64 7897 6684 225 139 0 0 chr3 157200213 157200256 -60836902 + (A)n Simple_repeat Simple_repeat 1 43 0 1088 297 121 78 chr3 157200376 157201422 -60835736 - MER52A LTR ERV1 0 1755 666 23 54 0 0 chr3 157201630 157201667 -60835491 + AT_rich Low_complexity Low_complexity 1 37 0 956 295 63 46 chr3 157201868 157202120 -60835038 - L1MC4a LINE L1 -1742 6066 5820 2053 124 30 0 chr3 157202120 157202419 -60834739 - AluSx SINE Alu -4 308 1 956 295 63 46 chr3 157202419 157202755 -60834403 - L1MC4a LINE L1 -1988 5820 5468 378 0 0 0 chr3 157202919 157202961 -60834197 + (CA)n Simple_repeat Simple_repeat 2 43 0 22 56 0 0 chr3 157203065 157203101 -60834057 + AT_rich Low_complexity Low_complexity 1 36 0 413 269 10 0 chr3 157203512 157203616 -60833542 + FLAM_C SINE Alu 1 105 -38 468 384 25 8 chr3 157203790 157204027 -60833131 + LTR67 LTR ERVL 2 242 -315 573 245 27 27 chr3 157204174 157204362 -60832796 + LTR67 LTR ERVL 347 534 -23 2426 80 0 0 chr3 157205167 157205468 -60831690 + AluY SINE Alu 1 301 -10 262 364 76 29 chr3 157205817 157206133 -60831025 + HERVL LTR ERVL 1885 2215 -3439 1356 95 40 5 chr3 157206399 157206599 -60830559 + MER4E LTR ERV1 1 207 -559 326 335 61 41 chr3 157206714 157206959 -60830199 - L1MEd LINE L1 -5847 272 23 21 89 0 0 chr3 157207056 157207112 -60830046 + AT_rich Low_complexity Low_complexity 1 56 0 524 229 25 8 chr3 157207296 157207414 -60829744 - 5S rRNA rRNA -1 120 1 2409 161 44 10 chr3 157207473 157207882 -60829276 + MSTC LTR MaLR 6 428 0 579 101 22 0 chr3 157208680 157208769 -60828389 + MER4E LTR ERV1 676 766 0 1143 238 21 81 chr3 157208792 157209175 -60827983 + MLT1A1 LTR MaLR 1 360 -5 22 80 0 0 chr3 157209926 157209976 -60827182 + AT_rich Low_complexity Low_complexity 1 50 0 235 293 14 14 chr3 157210517 157210612 -60826546 - L1M4 LINE L1 -594 5590 5493 1415 240 39 3 chr3 157210689 157211001 -60826157 + MLT1D LTR MaLR 2 324 -181 3420 146 60 0 chr3 157211285 157211854 -60825304 + LTR26 LTR ERV1 1 603 0 614 259 0 0 chr3 157212029 157212160 -60824998 + FLAM_C SINE Alu 2 132 -1 212 224 90 15 chr3 157212891 157212958 -60824200 + MIR SINE MIR 119 190 -72 270 202 21 64 chr3 157212968 157213062 -60824096 + MER113 DNA MER1_type? 3 92 -429 361 302 19 19 chr3 157213276 157213382 -60823776 + L2 LINE L2 3184 3289 -24 231 125 0 0 chr3 157213695 157213735 -60823423 + (TC)n Simple_repeat Simple_repeat 2 41 0 455 45 15 0 chr3 157213735 157213801 -60823357 + (CA)n Simple_repeat Simple_repeat 1 67 0 230 164 90 104 chr3 157214176 157214243 -60822915 + L2 LINE L2 3248 3313 0 15301 164 24 49 chr3 157214815 157216813 -60820345 - L1MA3 LINE L1 0 7724 5679 220 26 26 26 chr3 157216813 157216851 -60820307 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 15301 164 24 49 chr3 157216851 157217468 -60819690 - L1MA3 LINE L1 -2045 5679 5049 2309 99 0 0 chr3 157217468 157217762 -60819396 - AluY SINE Alu -17 294 1 15301 164 24 49 chr3 157217762 157219666 -60817492 - L1MA3 LINE L1 -2675 5049 3100 2056 152 0 0 chr3 157219666 157219963 -60817195 - AluSg SINE Alu -13 297 1 15301 164 24 49 chr3 157219963 157222393 -60814765 - L1MA3 LINE L1 -4624 3100 950 492 242 42 63 chr3 157222532 157222722 -60814436 - MIR SINE MIR -3 259 74 24 67 0 0 chr3 157223276 157223321 -60813837 + AT_rich Low_complexity Low_complexity 1 45 0 804 304 21 12 chr3 157223698 157223941 -60813217 - MIR SINE MIR -10 252 8 4458 172 83 79 chr3 157226012 157226838 -60810320 - MER4B-int LTR ERV1 -475 6283 5449 1873 74 0 8 chr3 157226838 157227095 -60810063 - L1PA5 LINE L1 -4 6150 5896 4458 172 83 79 chr3 157227095 157227467 -60809691 - MER4B-int LTR ERV1 -1309 5449 5080 1037 93 0 7 chr3 157227583 157227722 -60809436 - MER72 LTR ERV1 0 722 585 222 227 0 0 chr3 157227980 157228024 -60809134 + (TATATG)n Simple_repeat Simple_repeat 4 47 0 301 287 11 11 chr3 157228025 157228119 -60809039 - L1MC4 LINE L1 -1340 6702 6609 430 210 0 0 chr3 157228133 157228214 -60808944 - FLAM_A SINE Alu -17 125 45 321 104 0 0 chr3 157228368 157228416 -60808742 - MLT2A1 LTR ERVL 0 444 397 273 155 0 0 chr3 157228421 157228479 -60808679 + (TA)n Simple_repeat Simple_repeat 1 58 0 3027 85 12 0 chr3 157228484 157228883 -60808275 - MLT2A1 LTR ERVL -40 404 1 43742 76 10 3 chr3 157228883 157234497 -60802661 - HERVL-A1 LTR ERVL 0 5654 1 352 39 78 0 chr3 157234497 157234548 -60802610 - MLT2A1 LTR ERVL 0 444 390 2971 79 22 10 chr3 157234579 157234983 -60802175 - MLT2A1 LTR ERVL -34 410 2 4519 119 9 13 chr3 157236613 157237286 -60799872 - Charlie3 DNA MER1_type -4 2706 2037 3026 101 7 15 chr3 157237292 157237748 -60799410 - THE1A-int LTR MaLR -1127 453 2 2380 97 20 8 chr3 157237749 157238100 -60799058 - THE1A LTR MaLR 0 355 1 13896 104 14 38 chr3 157238100 157239262 -60797896 - Charlie3 DNA MER1_type -665 2041 946 2155 106 3 0 chr3 157239262 157239579 -60797579 - AluSc SINE Alu 0 318 1 13896 104 14 38 chr3 157239579 157240504 -60796654 - Charlie3 DNA MER1_type -1760 946 1 251 156 0 22 chr3 157241672 157241717 -60795441 + L2 LINE L2 3227 3270 -2 1000 243 229 33 chr3 157242173 157242688 -60794470 + L1MC4 LINE L1 6460 7075 -967 1277 251 189 11 chr3 157242703 157243253 -60793905 + L1MC4 LINE L1 7255 7902 -140 261 0 0 0 chr3 157243742 157243771 -60793387 + (TA)n Simple_repeat Simple_repeat 1 29 0 225 241 38 25 chr3 157243819 157243898 -60793260 + CT-rich Low_complexity Low_complexity 4 83 0 1752 162 33 0 chr3 157245081 157245353 -60791805 - AluSq SINE Alu -27 286 6 26 0 0 0 chr3 157246540 157246566 -60790592 + AT_rich Low_complexity Low_complexity 1 26 0 2278 134 19 22 chr3 157248002 157248367 -60788791 + THE1B LTR MaLR 1 364 0 575 171 301 7 chr3 157248445 157248591 -60788567 - MER5A DNA MER1_type 0 189 1 200 211 56 0 chr3 157248828 157248899 -60788259 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 340 305 70 32 chr3 157250018 157250205 -60786953 - L1MC4a LINE L1 -181 5940 5745 234 211 35 0 chr3 157250518 157250575 -60786583 + (TATATG)n Simple_repeat Simple_repeat 4 62 0 301 287 11 11 chr3 157250576 157250670 -60786488 - L1MC4 LINE L1 -1340 6702 6609 430 210 0 0 chr3 157250684 157250765 -60786393 - FLAM_A SINE Alu -17 125 45 321 104 0 0 chr3 157250919 157250967 -60786191 - MLT2A1 LTR ERVL 0 444 397 273 155 0 0 chr3 157250972 157251030 -60786128 + (TA)n Simple_repeat Simple_repeat 1 58 0 2856 80 39 0 chr3 157251035 157251423 -60785735 - MLT2A1 LTR ERVL -40 404 2 4131 121 13 24 chr3 157253049 157253721 -60783437 - Charlie3 DNA MER1_type -4 2706 2042 22 0 0 0 chr3 157256711 157256733 -60780425 + AT_rich Low_complexity Low_complexity 1 22 0 805 299 61 37 chr3 157256934 157257342 -60779816 - LTR16A LTR ERVL -13 437 20 989 353 46 30 chr3 157257957 157258767 -60778391 - HERV16 LTR ERVL -1100 4554 3732 1622 343 44 14 chr3 157258816 157259988 -60777170 - HERV16 LTR ERVL -1907 3089 2001 374 298 81 30 chr3 157260051 157260249 -60776909 + L2 LINE L2 3106 3313 0 235 259 130 28 chr3 157260527 157260635 -60776523 - MIR3 SINE MIR 0 208 90 482 343 40 29 chr3 157261019 157261293 -60775865 + MLT1K LTR MaLR 143 419 -169 565 85 11 21 chr3 157261359 157261453 -60775705 + (TTCC)n Simple_repeat Simple_repeat 4 96 0 600 173 29 0 chr3 157261556 157261695 -60775463 + CT-rich Low_complexity Low_complexity 1 143 0 1056 217 5 0 chr3 157261700 157261921 -60775237 - AluJb SINE Alu -4 308 87 319 219 85 0 chr3 157261936 157262018 -60775140 + MLT1K LTR MaLR 494 582 -6 454 87 29 0 chr3 157262089 157262158 -60775000 + AluSc SINE Alu 236 306 -3 5034 152 10 10 chr3 157266218 157266229 -60770929 - L1MA2 LINE L1 -240 6064 6054 429 108 0 0 chr3 157266229 157266294 -60770864 - L1MA3 LINE L1 -5 6300 6236 5034 152 10 10 chr3 157266294 157267885 -60769273 - L1MA2 LINE L1 -250 6054 4457 231 242 0 0 chr3 157267981 157268043 -60769115 - HAL1 LINE L1 -1485 1022 961 24 32 0 0 chr3 157271582 157271613 -60765545 + AT_rich Low_complexity Low_complexity 1 31 0 5887 90 6 0 chr3 157272672 157273537 -60763621 - L1P LINE L1 -2442 3704 2835 273 182 0 0 chr3 157276269 157276324 -60760834 + A-rich Low_complexity Low_complexity 1 55 0 516 294 87 27 chr3 157277824 157278008 -60759150 + MIR SINE MIR 42 236 -26 529 303 20 5 chr3 157278292 157278487 -60758671 + L1ME LINE L1 5547 5744 -377 25 31 0 0 chr3 157279545 157279577 -60757581 + AT_rich Low_complexity Low_complexity 1 32 0 242 292 77 85 chr3 157279690 157279737 -60757421 - MIR SINE MIR -29 233 187 897 207 11 5 chr3 157279737 157279925 -60757233 + MER5A DNA MER1_type 1 189 0 242 292 77 85 chr3 157279925 157280007 -60757151 - MIR SINE MIR -75 187 105 2183 121 0 0 chr3 157280447 157280752 -60756406 - AluSg SINE Alu -5 305 1 229 278 53 60 chr3 157280953 157281086 -60756072 + MLT1L LTR MaLR 18 149 -466 276 309 31 10 chr3 157281104 157281201 -60755957 + MER5B DNA MER1_type 28 126 -52 575 294 161 29 chr3 157281211 157281626 -60755532 + MLT1L LTR MaLR 143 612 -3 1660 138 3 112 chr3 157281724 157282064 -60755094 + AluSq SINE Alu 1 303 0 256 344 82 16 chr3 157283444 157283566 -60753592 - L2 LINE L2 -5 3267 3138 437 303 88 17 chr3 157284956 157285194 -60751964 + MIR SINE MIR 2 256 -6 22 70 0 0 chr3 157285889 157285932 -60751226 + AT_rich Low_complexity Low_complexity 1 43 0 24 32 0 0 chr3 157286982 157287013 -60750145 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr3 157288392 157288413 -60748745 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr3 157288703 157288729 -60748429 + AT_rich Low_complexity Low_complexity 1 26 0 27 49 0 0 chr3 157289278 157289319 -60747839 + AT_rich Low_complexity Low_complexity 1 41 0 249 323 52 13 chr3 157290064 157290219 -60746939 + L1MEd LINE L1 981 1141 -4978 1514 134 30 27 chr3 157290558 157290856 -60746302 + Tigger2 DNA MER2_type 13 311 -2407 2074 152 0 57 chr3 157291361 157291649 -60745509 - HSMAR2 DNA Mariner -922 380 120 1684 192 0 10 chr3 157291649 157291961 -60745197 + AluJb SINE Alu 1 309 -3 2074 152 0 57 chr3 157291961 157292073 -60745085 - HSMAR2 DNA Mariner -1182 120 3 306 106 0 0 chr3 157292073 157292120 -60745038 + (TG)n Simple_repeat Simple_repeat 2 48 0 12314 205 59 59 chr3 157292122 157296667 -60740491 - L1M2 LINE L1 -552 7158 2505 500 277 8 0 chr3 157296667 157296786 -60740372 - FLAM_A SINE Alu -12 130 11 12314 205 59 59 chr3 157296786 157297395 -60739763 - L1M2 LINE L1 -5205 2505 1897 2172 125 47 36 chr3 157297558 157297918 -60739240 - THE1B LTR MaLR 0 364 1 11300 107 2 1 chr3 157297918 157299497 -60737661 - THE1B-int LTR MaLR 0 1580 1 1939 139 9 35 chr3 157299497 157299814 -60737344 - THE1B LTR MaLR 0 364 56 894 299 44 42 chr3 157300514 157300965 -60736193 - L1M2 LINE L1 -5503 1983 1532 * 2661 169 54 28 chr3 157300962 157301577 -60735581 - L1 LINE L1 -1433 4713 4083 375 299 58 19 chr3 157301873 157302027 -60735131 + MIR3 SINE MIR 44 203 -5 1368 196 68 45 chr3 157302108 157302445 -60734713 + MER2 DNA MER2_type 1 345 0 185 233 178 27 chr3 157302884 157302957 -60734201 + L3b LINE CR1 1382 1465 -118 239 311 158 59 chr3 157303110 157303502 -60733656 - L2 LINE L2 -610 2704 2274 226 222 0 0 chr3 157304336 157304381 -60732777 + MER4A LTR ERV1 54 98 -566 938 220 117 5 chr3 157304986 157305200 -60731958 + MER8 DNA MER2_type 1 238 -1 2726 162 21 21 chr3 157305478 157305989 -60731169 + Tigger2 DNA MER2_type 234 744 -1974 1227 131 25 124 chr3 157306059 157306341 -60730817 + Tigger2 DNA MER2_type 2465 2718 0 403 337 79 16 chr3 157306641 157306831 -60730327 + MLT1J2 LTR MaLR 216 417 -33 229 258 21 21 chr3 157308017 157308110 -60729048 + L1P LINE L1 3376 3468 -2678 1708 133 76 13 chr3 157308284 157308601 -60728557 + MER1B DNA MER1_type 1 337 0 278 285 61 75 chr3 157308628 157308842 -60728316 + L1ME1 LINE L1 3622 3832 -2314 364 302 117 50 chr3 157309026 157309446 -60727712 + L1ME1 LINE L1 4068 4515 -1631 527 281 59 50 chr3 157309488 157310002 -60727156 + L1MCc LINE L1 33 597 -5826 974 220 5 5 chr3 157310232 157310432 -60726726 + MLT1B LTR MaLR 191 390 0 3343 224 53 20 chr3 157310437 157311585 -60725573 + L1ME1 LINE L1 4986 6160 -6 376 307 67 33 chr3 157311605 157311934 -60725224 + L1ME LINE L1 5038 5377 -769 271 246 109 32 chr3 157311943 157312101 -60725057 + L1ME LINE L1 5410 5596 -525 5275 116 22 7 chr3 157312194 157313029 -60724129 - L1MA2 LINE L1 0 6304 5458 21 0 0 0 chr3 157313065 157313086 -60724072 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr3 157313218 157313244 -60723914 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 157313524 157313545 -60723613 + AT_rich Low_complexity Low_complexity 1 21 0 749 323 45 35 chr3 157314399 157314801 -60722357 + MLT1I LTR MaLR 2 407 -2 291 262 221 28 chr3 157315192 157315337 -60721821 - MIR SINE MIR 0 262 90 * 1120 277 102 17 chr3 157315333 157315755 -60721403 - L2 LINE L2 -1207 2107 1650 2650 196 6 4 chr3 157315755 157316296 -60720862 - L1P LINE L1 -1671 4475 3934 618 299 55 14 chr3 157316296 157316513 -60720645 - L2 LINE L2 -2910 404 179 361 324 64 48 chr3 157316778 157317152 -60720006 + L1ME LINE L1 5420 5799 -322 393 115 0 0 chr3 157318067 157318119 -60719039 - L1PA11 LINE L1 -61 6113 6062 24 53 0 0 chr3 157319039 157319077 -60718081 + AT_rich Low_complexity Low_complexity 1 38 0 21 57 0 0 chr3 157319627 157319662 -60717496 + AT_rich Low_complexity Low_complexity 1 35 0 274 316 38 13 chr3 157320055 157320213 -60716945 + L1MEc LINE L1 35 196 -6200 328 354 55 12 chr3 157320578 157320742 -60716416 + L1M4 LINE L1 3958 4128 -2018 8008 120 10 11 chr3 157321380 157323241 -60713917 + L1PA11 LINE L1 4020 5876 -298 200 211 56 0 chr3 157323639 157323710 -60713448 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 395 344 101 16 chr3 157324847 157325063 -60712095 - L1MC4a LINE L1 -1896 5912 5716 279 93 0 0 chr3 157325063 157325106 -60712052 + (TG)n Simple_repeat Simple_repeat 2 44 0 395 344 101 16 chr3 157325106 157325264 -60711894 - L1MC4a LINE L1 -2092 5716 5506 201 208 0 62 chr3 157325744 157325792 -60711366 - L2 LINE L2 -356 2958 2914 198 103 0 0 chr3 157326229 157326258 -60710900 + (TC)n Simple_repeat Simple_repeat 2 30 0 189 0 0 0 chr3 157326257 157326278 -60710880 + (T)n Simple_repeat Simple_repeat 1 21 0 * 5909 165 15 12 chr3 157326496 157327978 -60709180 + L1MA4 LINE L1 4812 6299 -1 27 0 0 0 chr3 157328938 157328965 -60708193 + AT_rich Low_complexity Low_complexity 1 27 0 3981 69 4 0 chr3 157329783 157330337 -60706821 - L1PA4 LINE L1 -428 5726 5165 3412 31 2 14 chr3 157330337 157330760 -60706398 + L1PA4 LINE L1 5737 6155 0 3981 69 4 0 chr3 157330760 157330786 -60706372 - L1P2 LINE L1 -989 5165 5141 357 269 64 91 chr3 157331097 157331366 -60705792 + L1ME LINE L1 5532 5793 -328 423 0 0 0 chr3 157331547 157331594 -60705564 + (TA)n Simple_repeat Simple_repeat 1 47 0 1275 179 139 44 chr3 157331625 157331957 -60705201 + MLT1A2 LTR MaLR 1 374 0 302 153 17 0 chr3 157332098 157332157 -60705001 + GA-rich Low_complexity Low_complexity 1 60 0 429 249 73 17 chr3 157333615 157333792 -60703366 - L1MC5 LINE L1 -48 7913 7727 1382 303 66 50 chr3 157335709 157336406 -60700752 - L3 LINE CR1 -219 1358 651 294 236 113 19 chr3 157337122 157337228 -60699930 - MLT1H LTR MaLR -304 245 130 1659 145 6 75 chr3 157337453 157337638 -60699520 - AluSx SINE Alu -16 296 139 1158 112 0 0 chr3 157337638 157337843 -60699315 + (TA)n Simple_repeat Simple_repeat 1 205 0 1659 145 6 75 chr3 157337843 157337974 -60699184 - AluSx SINE Alu -173 139 1 342 45 0 0 chr3 157338566 157338610 -60698548 + (CA)n Simple_repeat Simple_repeat 2 45 0 3557 151 53 6 chr3 157338634 157339258 -60697900 + MER39B LTR ERV1 1 653 0 212 338 0 28 chr3 157339735 157339806 -60697352 - MIR SINE MIR -59 149 81 294 301 45 8 chr3 157339849 157339982 -60697176 + MIR SINE MIR 105 242 -20 365 247 175 36 chr3 157340184 157340544 -60696614 + L1ME4a LINE L1 5711 6120 -1 22 0 0 0 chr3 157343419 157343441 -60693717 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 157344412 157344440 -60692718 + AT_rich Low_complexity Low_complexity 1 28 0 635 206 0 0 chr3 157344709 157344835 -60692323 + FLAM_C SINE Alu 15 140 -3 1746 174 17 66 chr3 157345186 157345595 -60691563 + MLT1B LTR MaLR 2 390 0 215 308 90 0 chr3 157345882 157345960 -60691198 + MIR SINE MIR 119 203 -59 200 288 0 38 chr3 157347309 157347389 -60689769 + A-rich Low_complexity Low_complexity 2 78 0 304 192 26 0 chr3 157348135 157348213 -60688945 - MER116 DNA Mariner 0 80 1 594 249 33 39 chr3 157349105 157349286 -60687872 - MER5A DNA MER1_type -2 187 8 731 134 35 6 chr3 157349368 157349539 -60687619 + CT-rich Low_complexity Low_complexity 3 178 0 360 0 0 0 chr3 157349540 157349580 -60687578 + (TCTCC)n Simple_repeat Simple_repeat 5 44 0 1700 164 4 14 chr3 157349593 157349868 -60687290 - AluJb SINE Alu -40 272 1 463 313 84 26 chr3 157350494 157350721 -60686437 - MIR SINE MIR -12 250 11 484 261 99 12 chr3 157350846 157351007 -60686151 - MIR SINE MIR 0 262 88 1263 175 9 112 chr3 157351050 157351381 -60685777 - MLT1A1 LTR MaLR 0 365 69 262 0 53 0 chr3 157351928 157351966 -60685192 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 541 294 216 0 chr3 157352207 157352411 -60684747 + MIR SINE MIR 10 257 -5 183 300 25 25 chr3 157352457 157352537 -60684621 + L2 LINE L2 3229 3308 -5 364 387 59 8 chr3 157352537 157352790 -60684368 - L3 LINE CR1 -112 1465 1200 353 339 94 64 chr3 157353446 157353827 -60683331 + L2 LINE L2 2686 3083 -189 212 274 32 16 chr3 157354060 157354122 -60683036 - MIR SINE MIR -10 252 190 1074 262 55 29 chr3 157354193 157354701 -60682457 - MLT1H LTR MaLR 0 590 1 326 188 24 0 chr3 157355106 157355179 -60681979 + HsTC2 DNA Tc2 1820 1898 0 198 325 0 77 chr3 157355181 157355298 -60681860 - MIR SINE MIR -114 148 41 26 0 0 0 chr3 157355384 157355410 -60681748 + AT_rich Low_complexity Low_complexity 1 26 0 2154 45 0 0 chr3 157355410 157355676 -60681482 - L1PA2 LINE L1 -2 6153 5888 21 0 0 0 chr3 157355731 157355752 -60681406 + AT_rich Low_complexity Low_complexity 1 21 0 597 318 78 27 chr3 157357598 157357894 -60679264 + MLT1G1 LTR MaLR 79 389 -206 258 32 0 0 chr3 157357944 157357975 -60679183 + (CA)n Simple_repeat Simple_repeat 1 31 0 23 0 0 0 chr3 157358272 157358295 -60678863 + AT_rich Low_complexity Low_complexity 1 23 0 1099 206 69 0 chr3 157359024 157359242 -60677916 + AluJo SINE Alu 1 233 -79 1576 244 44 76 chr3 157359242 157359860 -60677298 + LTR9 LTR ERV1 1 598 -14 368 165 101 0 chr3 157359862 157359941 -60677217 + AluJo SINE Alu 216 302 0 22 35 0 0 chr3 157361214 157361243 -60675915 + AT_rich Low_complexity Low_complexity 1 29 0 14945 164 24 18 chr3 157361287 157364641 -60672517 + L1MA2 LINE L1 15 3349 -4374 2182 82 9 67 chr3 157364641 157364971 -60672187 + AluY SINE Alu 1 311 0 14945 164 24 18 chr3 157364971 157368687 -60668471 + L1MA2 LINE L1 3349 7289 -434 2244 119 0 0 chr3 157368687 157368999 -60668159 + AluSx SINE Alu 1 312 0 14945 164 24 18 chr3 157368999 157369132 -60668026 + L1MA2 LINE L1 7289 7420 -303 310 236 56 11 chr3 157369316 157369405 -60667753 - MER103 DNA DNA -17 149 57 509 141 33 58 chr3 157370093 157370214 -60666944 - Charlie1 DNA MER1_type -6 2755 2638 1357 250 180 4 chr3 157371345 157371801 -60665357 - MLT1H LTR MaLR -13 536 1 282 313 104 15 chr3 157372634 157372835 -60664323 + L3b LINE CR1 1176 1394 -189 28 29 0 0 chr3 157372901 157372936 -60664222 + AT_rich Low_complexity Low_complexity 1 35 0 361 339 42 14 chr3 157373935 157374121 -60663037 + MIR SINE MIR 10 192 -65 1860 156 0 10 chr3 157375007 157375295 -60661863 + AluJb SINE Alu 14 298 -14 184 264 85 57 chr3 157375430 157375536 -60661622 - L2 LINE L2 -923 2391 2283 229 153 17 17 chr3 157375987 157376046 -60661112 + CT-rich Low_complexity Low_complexity 3 61 0 21 0 0 0 chr3 157376231 157376252 -60660906 + AT_rich Low_complexity Low_complexity 1 21 0 2167 121 0 26 chr3 157376254 157376567 -60660591 - AluSq SINE Alu -8 305 1 1953 209 44 5 chr3 157378248 157378655 -60658503 - MSTB LTR MaLR -1 425 3 856 257 132 8 chr3 157381761 157382154 -60655004 - LTR37B LTR ERV1 0 468 27 2144 100 0 10 chr3 157382158 157382449 -60654709 - AluSq SINE Alu -25 288 1 267 280 110 10 chr3 157383722 157383822 -60653336 + L2 LINE L2 3111 3220 -52 784 87 17 0 chr3 157386534 157386649 -60650509 + AluSg/x SINE Alu 189 305 -7 363 136 0 0 chr3 157386986 157387045 -60650113 + (TA)n Simple_repeat Simple_repeat 2 60 0 261 139 0 0 chr3 157387208 157387251 -60649907 + (CA)n Simple_repeat Simple_repeat 2 44 0 195 42 0 0 chr3 157389039 157389063 -60648095 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 263 293 98 16 chr3 157389525 157389648 -60647510 - MIR SINE MIR -110 152 20 194 113 42 28 chr3 157390144 157390215 -60646943 + (TATAA)n Simple_repeat Simple_repeat 3 74 0 352 155 271 16 chr3 157390363 157390492 -60646666 + MER103 DNA DNA 2 163 -3 26 64 0 0 chr3 157393196 157393243 -60643915 + AT_rich Low_complexity Low_complexity 1 47 0 1845 230 144 33 chr3 157393521 157394217 -60642941 - L1ME2 LINE L1 -32 6201 5429 25 31 0 0 chr3 157394250 157394282 -60642876 + AT_rich Low_complexity Low_complexity 1 32 0 348 127 0 0 chr3 157394498 157394553 -60642605 + (TG)n Simple_repeat Simple_repeat 2 56 0 1517 154 92 8 chr3 157394578 157394838 -60642320 - AluJb SINE Alu -30 282 1 2038 260 113 28 chr3 157394840 157396745 -60640413 - L1ME2 LINE L1 -779 5436 3695 2110 264 28 15 chr3 157396745 157397363 -60639795 - MLT1E2 LTR MaLR 0 626 1 2038 260 113 28 chr3 157397363 157398764 -60638394 - L1ME2 LINE L1 -2520 3695 1718 258 288 127 58 chr3 157398836 157399041 -60638117 - L2 LINE L2 -536 2778 2560 286 300 126 0 chr3 157399702 157399826 -60637332 + MER20 DNA MER1_type 72 212 -7 585 221 20 98 chr3 157401006 157401210 -60635948 + MER5A DNA MER1_type 1 188 -1 490 327 128 43 chr3 157401517 157402003 -60635155 - L2 LINE L2 -938 2376 1850 2214 93 3 37 chr3 157402179 157402501 -60634657 - AluSq SINE Alu -2 311 1 383 337 66 76 chr3 157404076 157404960 -60632198 - L2 LINE L2 -1 3312 2420 2063 141 5 46 chr3 157405082 157405452 -60631706 - THE1A LTR MaLR 0 355 1 11353 106 10 1 chr3 157405452 157407019 -60630139 - THE1B-int LTR MaLR 0 1580 1 2086 122 21 53 chr3 157407019 157407395 -60629763 - THE1B LTR MaLR 0 364 1 554 366 5 13 chr3 157407505 157407729 -60629429 + L1PA16 LINE L1 5 226 -6561 5457 249 15 6 chr3 157408233 157410606 -60626552 + L1PA16 LINE L1 1369 3784 -3013 5143 166 11 16 chr3 157410599 157411612 -60625546 - L1P LINE L1 -2433 3713 2706 * 4719 179 14 10 chr3 157411612 157412922 -60624236 + L1PA16 LINE L1 5499 6813 -4 28 29 0 0 chr3 157413169 157413204 -60623954 + AT_rich Low_complexity Low_complexity 1 35 0 579 328 12 47 chr3 157413718 157413971 -60623187 - MIR SINE MIR -10 252 9 21 0 0 0 chr3 157414179 157414200 -60622958 + AT_rich Low_complexity Low_complexity 1 21 0 13309 150 12 45 chr3 157414930 157415644 -60621514 - Tigger4(Zombi) DNA MER2_type -17 2714 1978 2341 61 0 10 chr3 157415644 157415941 -60621217 + AluY SINE Alu 1 294 -17 13309 150 12 45 chr3 157415941 157417852 -60619306 - Tigger4(Zombi) DNA MER2_type -753 1978 158 3644 62 2 0 chr3 157417852 157418304 -60618854 - MLT2A2 LTR ERVL 0 453 1 13309 150 12 45 chr3 157418304 157418457 -60618701 - Tigger4(Zombi) DNA MER2_type -2573 158 2 546 321 47 5 chr3 157418493 157418686 -60618472 - MIR SINE MIR -34 228 28 202 204 0 0 chr3 157418810 157418854 -60618304 + T-rich Low_complexity Low_complexity 2 45 0 46 54 0 0 chr3 157419158 157419232 -60617926 + AT_rich Low_complexity Low_complexity 1 74 0 256 318 39 31 chr3 157419430 157419559 -60617599 + MLT1K LTR MaLR 15 144 -444 705 303 100 23 chr3 157419593 157419943 -60617215 + MLT1K LTR MaLR 209 585 -3 1353 228 41 27 chr3 157420891 157420948 -60616210 + MLT1A2 LTR MaLR 1 56 -318 1913 156 0 28 chr3 157420948 157421269 -60615889 + AluSx SINE Alu 1 312 0 1353 228 41 27 chr3 157421269 157421580 -60615578 + MLT1A2 LTR MaLR 56 374 0 28 0 0 0 chr3 157422668 157422696 -60614462 + AT_rich Low_complexity Low_complexity 1 28 0 201 296 0 42 chr3 157422771 157422842 -60614316 - L2 LINE L2 -4 3268 3201 459 324 28 0 chr3 157423308 157423487 -60613671 - MIR SINE MIR -3 259 76 284 309 46 26 chr3 157424013 157424165 -60612993 + Charlie8 DNA MER1_type 74 228 -2189 1863 243 55 60 chr3 157424198 157424593 -60612565 - MLT1E2 LTR MaLR 0 626 232 2080 117 0 0 chr3 157424593 157424914 -60612244 - AluSx SINE Alu 0 321 1 1863 243 55 60 chr3 157424914 157425085 -60612073 - MLT1E2 LTR MaLR -394 232 62 22 0 0 0 chr3 157425635 157425657 -60611501 + AT_rich Low_complexity Low_complexity 1 22 0 257 203 13 101 chr3 157426501 157426580 -60610578 + MLT1I LTR MaLR 3 74 -335 410 222 160 42 chr3 157426642 157426786 -60610372 + MLT1I LTR MaLR 243 403 -6 1688 197 3 3 chr3 157426913 157427207 -60609951 - AluJb SINE Alu -16 296 3 1419 126 0 0 chr3 157428310 157428501 -60608657 + AluSc SINE Alu 7 197 -112 591 201 0 0 chr3 157428503 157428657 -60608501 + (TA)n Simple_repeat Simple_repeat 2 155 0 309 177 101 0 chr3 157428660 157428739 -60608419 - L1MC4 LINE L1 -1340 6702 6616 304 192 26 0 chr3 157430698 157430776 -60606382 + MER116 DNA Mariner 1 80 0 200 288 0 38 chr3 157431522 157431602 -60605556 + T-rich Low_complexity Low_complexity 2 78 0 215 308 90 0 chr3 157432951 157433029 -60604129 - MIR SINE MIR -59 203 119 1765 171 17 66 chr3 157433316 157433725 -60603433 - MLT1B LTR MaLR 0 390 2 635 206 0 0 chr3 157434076 157434202 -60602956 - FLAM_C SINE Alu -3 140 15 21 36 0 0 chr3 157434471 157434499 -60602659 + AT_rich Low_complexity Low_complexity 1 28 0 14177 175 27 23 chr3 157435350 157435904 -60601254 - L1MA2 LINE L1 0 6540 5989 2306 80 3 10 chr3 157435904 157436204 -60600954 - AluY SINE Alu -13 298 1 14177 175 27 23 chr3 157436204 157439000 -60598158 - L1MA2 LINE L1 -551 5989 3170 2057 137 0 3 chr3 157439000 157439307 -60597851 - AluSx SINE Alu -6 306 1 14177 175 27 23 chr3 157439307 157440177 -60596981 - L1MA2 LINE L1 -3370 3170 2305 611 235 16 70 chr3 157440183 157440370 -60596788 - MLT1D LTR MaLR -328 177 1 316 373 0 0 chr3 157440896 157440998 -60596160 + L2 LINE L2 3203 3304 -9 * 399 350 101 30 chr3 157440995 157441540 -60595618 - L2 LINE L2 -225 3047 2470 2044 125 0 3 chr3 157443128 157443439 -60593719 - AluSx SINE Alu -2 310 1 255 161 0 18 chr3 157444742 157444798 -60592360 - L1MC4 LINE L1 -1339 6703 6649 603 242 93 0 chr3 157446319 157446480 -60590678 - L3b LINE CR1 -226 1357 1182 5796 200 56 23 chr3 157447372 157449542 -60587616 - L1MA5A LINE L1 -4 6935 4691 697 203 0 0 chr3 157449540 157449673 -60587485 - L1MA5A LINE L1 -3393 3395 3263 * 10165 197 36 20 chr3 157449665 157450271 -60586887 - L1MA5A LINE L1 -4708 2081 1486 243 61 0 0 chr3 157450271 157450304 -60586854 + (TG)n Simple_repeat Simple_repeat 2 34 0 10165 197 36 20 chr3 157450304 157451742 -60585416 - L1MA5A LINE L1 -5303 1486 4 783 221 12 12 chr3 157451768 157451931 -60585227 - FRAM SINE Alu -3 163 1 28 29 0 0 chr3 157452169 157452204 -60584954 + AT_rich Low_complexity Low_complexity 1 35 0 285 295 56 59 chr3 157452748 157453036 -60584122 - L1ME4a LINE L1 -1 6120 5834 2623 172 89 61 chr3 157453072 157453710 -60583448 - L1MB2 LINE L1 -5 6166 5511 21 57 0 0 chr3 157454820 157454855 -60582303 + AT_rich Low_complexity Low_complexity 1 35 0 634 104 0 0 chr3 157455871 157455967 -60581191 + L1PB1 LINE L1 6055 6150 -1 334 194 15 0 chr3 157456075 157456142 -60581016 + L1MD3 LINE L1 7716 7783 -212 2035 87 3 93 chr3 157456181 157456525 -60580633 + L1PA8A LINE L1 5815 6127 -4 403 101 0 0 chr3 157456601 157456670 -60580488 + L1MC3 LINE L1 7554 7622 -163 226 330 45 0 chr3 157457296 157457384 -60579774 - MER5C DNA MER1_type -230 94 3 2026 215 99 0 chr3 157457809 157458265 -60578893 - MLT1D LTR MaLR 0 505 5 843 209 30 20 chr3 157459166 157459367 -60577791 + MER3 DNA MER1_type 2 204 -5 711 217 162 0 chr3 157459618 157459853 -60577305 + ORSL DNA AcHobo 2 274 -1 588 299 108 21 chr3 157460307 157460548 -60576610 + MIR SINE MIR 1 262 0 257 266 31 78 chr3 157460715 157460843 -60576315 + MIR SINE MIR 135 256 -6 1596 135 4 0 chr3 157460907 157461136 -60576022 + AluSq SINE Alu 35 264 -49 377 287 0 0 chr3 157464169 157464256 -60572902 + L2 LINE L2 3223 3309 -4 315 305 193 8 chr3 157465873 157466132 -60571026 + L3 LINE CR1 878 1184 -393 2232 103 10 0 chr3 157466313 157466615 -60570543 + AluSq SINE Alu 2 306 -7 415 278 146 7 chr3 157468765 157468916 -60568242 + MIR SINE MIR 3 174 -88 371 262 70 0 chr3 157469018 157469154 -60568004 + MIR SINE MIR 103 250 -12 341 93 19 0 chr3 157469155 157469209 -60567949 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 1394 293 61 33 chr3 157470226 157470802 -60566356 + L2 LINE L2 2302 2893 -421 254 284 0 21 chr3 157471469 157471564 -60565594 - L1ME4a LINE L1 -54 6067 5975 4707 99 7 12 chr3 157472499 157473183 -60563975 + L1PA10 LINE L1 5477 6157 -11 314 303 143 28 chr3 157473374 157473823 -60563335 + L1MEc LINE L1 2103 2560 -3655 1719 194 52 3 chr3 157474221 157474550 -60562608 - MER2 DNA MER2_type 0 345 1 12347 125 124 12 chr3 157474550 157476907 -60560251 - L1PBa LINE L1 -3595 3267 644 1022 177 5 0 chr3 157476909 157477101 -60560057 - L1PBa LINE L1 -6668 195 3 2944 217 15 13 chr3 157477114 157477786 -60559372 + L1MEc LINE L1 3538 4210 -2005 1973 170 41 11 chr3 157477786 157478150 -60559008 + THE1C LTR MaLR 1 375 0 1230 180 32 51 chr3 157478151 157478462 -60558696 + L1MEc LINE L1 4207 4511 -1704 375 372 77 17 chr3 157478532 157478766 -60558392 - L1MC/D LINE L1 -2053 5755 5508 241 320 15 20 chr3 157478773 157478970 -60558188 - L1MC/D LINE L1 -2332 5476 5281 1387 179 127 94 chr3 157479624 157480104 -60557054 + L1MC3 LINE L1 7258 7753 -32 2353 93 0 3 chr3 157481221 157481532 -60555626 - AluSx SINE Alu -2 310 1 399 254 9 18 chr3 157482463 157482577 -60554581 - MER69 DNA AcHobo -1 2525 2413 266 163 0 0 chr3 157482734 157482777 -60554381 - MER69 DNA AcHobo -2478 48 6 1462 199 3 36 chr3 157484284 157484590 -60552568 + AluJb SINE Alu 3 298 -14 219 333 84 47 chr3 157484590 157484803 -60552355 - L2 LINE L2 -228 3044 2824 392 299 34 77 chr3 157485701 157486025 -60551133 - L2 LINE L2 -733 2581 2272 3047 181 20 19 chr3 157486653 157486768 -60550390 - L1MA8 LINE L1 -10 6281 6168 1910 214 3 3 chr3 157486768 157487132 -60550026 - MLT1A1 LTR MaLR -1 364 1 3047 181 20 19 chr3 157487132 157487651 -60549507 - L1MA8 LINE L1 -123 6168 5646 2480 103 6 0 chr3 157487861 157488212 -60548946 + THE1A LTR MaLR 3 355 0 2382 54 0 3 chr3 157488283 157488578 -60548580 + AluY SINE Alu 1 294 -17 190 333 129 48 chr3 157488584 157488893 -60548265 - L2 LINE L2 -1240 2074 1741 510 61 0 0 chr3 157489160 157489226 -60547932 + (TG)n Simple_repeat Simple_repeat 2 67 0 208 270 32 0 chr3 157489242 157489303 -60547855 - MIR SINE MIR -9 253 191 349 252 226 38 chr3 157489303 157489462 -60547696 + MER5A DNA MER1_type 1 189 0 285 330 10 0 chr3 157489475 157489572 -60547586 - MIR SINE MIR -86 176 79 261 356 104 59 chr3 157489628 157490002 -60547156 - L2 LINE L2 -1855 1459 1069 227 70 0 47 chr3 157490003 157490046 -60547112 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 197 310 0 0 chr3 157490055 157490113 -60547045 - L2 LINE L2 -2263 1051 994 * 603 312 68 11 chr3 157490110 157490376 -60546782 + L2 LINE L2 2167 2447 -867 603 317 60 39 chr3 157490849 157491183 -60545975 - L2 LINE L2 -52 3261 2921 202 176 20 20 chr3 157491990 157492041 -60545117 + T-rich Low_complexity Low_complexity 3 53 0 279 79 0 0 chr3 157492630 157492668 -60544490 + (T)n Simple_repeat Simple_repeat 1 38 0 280 225 25 25 chr3 157492883 157492963 -60544195 - MIR SINE MIR -92 170 91 2299 74 0 0 chr3 157493069 157493365 -60543793 - AluY SINE Alu -15 296 1 216 0 0 0 chr3 157493365 157493389 -60543769 + (T)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr3 157493601 157493622 -60543536 + AT_rich Low_complexity Low_complexity 1 21 0 1982 117 38 0 chr3 157493702 157493993 -60543165 + AluSg SINE Alu 3 304 -6 234 319 56 63 chr3 157494229 157494514 -60542644 + MLT1K LTR MaLR 190 472 -116 1019 317 117 22 chr3 157494612 157495110 -60542048 - LTR67 LTR ERVL -11 546 2 1932 212 21 36 chr3 157495156 157495243 -60541915 + MLT1C LTR MaLR 3 90 -377 2055 124 45 28 chr3 157495243 157495599 -60541559 + THE1B LTR MaLR 1 362 -2 1932 212 21 36 chr3 157495599 157495983 -60541175 + MLT1C LTR MaLR 90 467 0 219 255 0 0 chr3 157495985 157496032 -60541126 - L2 LINE L2 -228 3044 2998 938 248 145 16 chr3 157496036 157496339 -60540819 - LTR16A LTR ERVL -21 429 88 2197 128 0 0 chr3 157497192 157497504 -60539654 + AluSx SINE Alu 1 312 0 272 228 158 103 chr3 157498618 157498722 -60538436 + MIR SINE MIR 61 181 -81 2007 105 0 4 chr3 157498722 157498999 -60538159 - AluSx SINE Alu -36 276 1 272 228 158 103 chr3 157498999 157499078 -60538080 + MIR SINE MIR 181 254 -8 379 268 56 89 chr3 157499260 157499618 -60537540 + L1ME4a LINE L1 5672 6017 -104 343 288 91 45 chr3 157500096 157500339 -60536819 + L1ME4a LINE L1 5681 5934 -187 803 242 16 0 chr3 157500874 157501060 -60536098 - MER5A DNA MER1_type 0 189 1 270 233 67 0 chr3 157501453 157501543 -60535615 - L1M4 LINE L1 -2409 3737 3642 1925 278 48 15 chr3 157502298 157502959 -60534199 - L1ME3A LINE L1 -208 5962 5280 180 217 0 0 chr3 157502968 157503014 -60534144 + (CATATA)n Simple_repeat Simple_repeat 1 46 0 2233 113 3 0 chr3 157503328 157503639 -60533519 + AluSp SINE Alu 1 312 -1 2772 101 30 11 chr3 157553908 157554344 -60482814 + MLT2A1 LTR ERVL 1 444 0 358 278 36 30 chr3 157554629 157554786 -60482372 + LTR28 LTR ERV1 2 139 -286 * 392 257 25 38 chr3 157554774 157554956 -60482202 + LTR1 LTR ERV1 121 220 -565 8588 83 2 1 chr3 157555071 157556180 -60480978 - HERVL LTR ERVL -571 5083 3974 1140 96 32 0 chr3 157556180 157556337 -60480821 - THE1A LTR MaLR -193 162 1 10477 120 28 7 chr3 157556337 157557879 -60479279 - THE1A-int LTR MaLR 0 1580 7 432 114 36 174 chr3 157557884 157557938 -60479220 - MLT2A1 LTR ERVL 0 444 384 291 28 0 0 chr3 157557938 157557974 -60479184 + (CA)n Simple_repeat Simple_repeat 2 37 0 432 114 36 174 chr3 157557974 157558086 -60479072 - MLT2A1 LTR ERVL -60 384 301 2124 126 32 20 chr3 157558188 157558529 -60478629 - MLT2A1 LTR ERVL -99 345 1 245 109 22 0 chr3 157558539 157558585 -60478573 + (CA)n Simple_repeat Simple_repeat 2 48 0 438 303 17 62 chr3 157558696 157558874 -60478284 - MIR3 SINE MIR -28 180 11 22 56 0 0 chr3 157559180 157559216 -60477942 + AT_rich Low_complexity Low_complexity 1 36 0 1087 151 0 0 chr3 157559248 157559420 -60477738 - L1PA15 LINE L1 -2 6163 5992 3482 103 6 0 chr3 157559422 157559908 -60477250 - L1PA15 LINE L1 -274 5891 5403 384 317 0 16 chr3 157562038 157562161 -60474997 + (TATATG)n Simple_repeat Simple_repeat 4 124 0 357 252 0 0 chr3 157562170 157562270 -60474888 + (TA)n Simple_repeat Simple_repeat 2 104 -8 1621 203 33 3 chr3 157562270 157562605 -60474553 + MER7A DNA MER2_type 1 343 -3 357 252 0 0 chr3 157562605 157562615 -60474543 + (TA)n Simple_repeat Simple_repeat 103 112 0 1647 326 72 21 chr3 157563700 157564742 -60472416 + L2 LINE L2 2198 3304 -9 237 83 0 0 chr3 157567869 157567905 -60469253 + (TG)n Simple_repeat Simple_repeat 2 37 0 410 285 134 39 chr3 157568805 157569320 -60467838 - L1M4 LINE L1 -1988 4158 3595 1080 155 35 43 chr3 157569531 157569789 -60467369 - L1MA4 LINE L1 -5 6295 6040 331 323 78 34 chr3 157570622 157570891 -60466267 - L1M4 LINE L1 -1451 4695 4415 2042 296 247 19 chr3 157571105 157572629 -60464529 - L2 LINE L2 0 3313 1303 378 328 60 30 chr3 157572694 157572926 -60464232 + MLT1J LTR MaLR 36 274 -237 1205 266 50 44 chr3 157574610 157575114 -60462044 - MLT1J LTR MaLR -4 507 1 22 56 0 0 chr3 157575181 157575217 -60461941 + AT_rich Low_complexity Low_complexity 1 36 0 269 205 265 43 chr3 157575549 157575666 -60461492 - L2 LINE L2 -5 3267 3125 770 301 88 55 chr3 157575910 157576479 -60460679 + MLT1K LTR MaLR 1 588 0 243 282 24 12 chr3 157576686 157576771 -60460387 - MER103 DNA DNA -77 89 4 519 344 25 32 chr3 157577684 157577969 -60459189 + L2 LINE L2 3031 3313 0 250 291 0 0 chr3 157578151 157578206 -60458952 + polypyrimidine Low_complexity Low_complexity 5 59 0 724 310 115 43 chr3 157578291 157578960 -60458198 + L2 LINE L2 2602 3308 -5 545 300 27 22 chr3 157581243 157581431 -60455727 - MIR SINE MIR -5 257 71 23 33 0 0 chr3 157582227 157582257 -60454901 + AT_rich Low_complexity Low_complexity 1 30 0 197 253 120 40 chr3 157582751 157582826 -60454332 - MIR SINE MIR -74 188 108 877 351 42 3 chr3 157583314 157583647 -60453511 - LTR16A LTR ERVL -13 437 92 1194 175 62 84 chr3 157583659 157584110 -60453048 - THE1C LTR MaLR 0 375 1 207 139 0 0 chr3 157584351 157584387 -60452771 + (GAAA)n Simple_repeat Simple_repeat 1 36 0 254 138 17 0 chr3 157585531 157585589 -60451569 - LTR66 LTR ERVL -158 452 394 180 176 0 0 chr3 157585589 157585623 -60451535 + (CATATA)n Simple_repeat Simple_repeat 6 39 0 741 360 138 25 chr3 157586788 157587785 -60449373 + L2 LINE L2 1427 2536 -778 185 322 67 22 chr3 157587852 157587942 -60449216 + L2 LINE L2 2650 2743 -571 10812 215 8 35 chr3 157588331 157590669 -60446489 + L1PA15 LINE L1 2829 5092 -1073 2206 132 0 0 chr3 157590669 157590979 -60446179 + AluSx SINE Alu 1 310 -2 10812 215 8 35 chr3 157590979 157592022 -60445136 + L1PA15 LINE L1 5092 6162 -3 196 277 15 31 chr3 157592025 157592090 -60445068 + L2 LINE L2 3160 3223 -49 188 250 12 71 chr3 157592876 157592960 -60444198 + MIR SINE MIR 118 196 -66 216 183 73 0 chr3 157596703 157596785 -60440373 + (TA)n Simple_repeat Simple_repeat 2 89 0 1125 90 0 0 chr3 157597864 157598009 -60439149 - AluSg/x SINE Alu -4 308 164 230 355 177 5 chr3 157599213 157599416 -60437742 + L3b LINE CR1 1129 1366 -217 322 353 15 15 chr3 157600051 157600184 -60436974 - MIR3 SINE MIR -40 168 36 1470 226 48 52 chr3 157601276 157601780 -60435378 - MLT1D LTR MaLR -3 502 1 426 264 46 0 chr3 157602073 157602160 -60434998 + MER81 DNA DNA 3 93 -21 211 91 0 0 chr3 157604468 157604501 -60432657 - L2 LINE L2 -2 3311 3279 180 77 0 0 chr3 157605315 157605341 -60431817 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1535 176 10 14 chr3 157607469 157607764 -60429394 + AluJb SINE Alu 1 294 -18 2204 115 0 10 chr3 157608617 157608931 -60428227 - AluY SINE Alu 0 311 1 315 0 0 0 chr3 157609110 157609145 -60428013 + (A)n Simple_repeat Simple_repeat 1 35 0 2205 81 3 0 chr3 157609513 157609796 -60427362 + AluY SINE Alu 1 284 -27 503 16 16 0 chr3 157609796 157609860 -60427298 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 271 281 94 62 chr3 157612097 157612438 -60424720 + L1ME4a LINE L1 5764 6115 -6 237 65 0 0 chr3 157612652 157612683 -60424475 + (A)n Simple_repeat Simple_repeat 1 31 0 295 341 98 0 chr3 157612732 157612864 -60424294 - MIR3 SINE MIR -11 197 53 23 0 0 0 chr3 157612868 157612891 -60424267 + AT_rich Low_complexity Low_complexity 1 23 0 423 132 0 0 chr3 157613002 157613070 -60424088 + (TA)n Simple_repeat Simple_repeat 1 68 0 353 122 0 95 chr3 157613282 157613356 -60423802 - Alu SINE Alu -7 295 244 302 272 166 41 chr3 157615296 157615465 -60421693 + MIR SINE MIR 73 262 0 1660 124 25 11 chr3 157615519 157615802 -60421356 - L1PB2 LINE L1 0 6151 5865 414 227 53 15 chr3 157615804 157615936 -60421222 + L1 LINE L1 3631 3767 -2379 * 6806 199 9 26 chr3 157615930 157617745 -60419413 + L1ME LINE L1 3703 5477 -644 1789 146 3 42 chr3 157617763 157618072 -60419086 + AluSx SINE Alu 6 302 -10 1408 171 60 39 chr3 157618077 157618262 -60418896 - THE1C LTR MaLR -35 340 143 2587 48 0 3 chr3 157618262 157618571 -60418587 + AluY SINE Alu 1 308 -3 1408 171 60 39 chr3 157618571 157618718 -60418440 - THE1C LTR MaLR -232 143 1 2688 136 11 2 chr3 157618721 157619154 -60418004 + L1PB1 LINE L1 5448 5884 -267 22 0 0 0 chr3 157620382 157620404 -60416754 + AT_rich Low_complexity Low_complexity 1 22 0 29 60 0 0 chr3 157620603 157620653 -60416505 + AT_rich Low_complexity Low_complexity 1 50 0 21 36 0 0 chr3 157620695 157620723 -60416435 + AT_rich Low_complexity Low_complexity 1 28 0 184 333 0 45 chr3 157621051 157621117 -60416041 - L2 LINE L2 -11 3261 3199 228 259 17 0 chr3 157621277 157621335 -60415823 - L2 LINE L2 -213 3059 3001 408 369 73 39 chr3 157622227 157622720 -60414438 - L2 LINE L2 -609 2705 2196 471 267 48 18 chr3 157623130 157623295 -60413863 - L1MCa LINE L1 -6253 173 4 * 921 214 53 79 chr3 157623292 157623652 -60413506 + L1ME LINE L1 4856 5208 -938 1683 167 0 11 chr3 157623652 157623959 -60413199 + AluSx SINE Alu 6 309 0 921 214 53 79 chr3 157623959 157623976 -60413182 + L1ME LINE L1 5208 5224 -922 198 0 0 0 chr3 157623984 157624006 -60413152 + (T)n Simple_repeat Simple_repeat 1 22 0 390 315 87 63 chr3 157624293 157624740 -60412418 + HAL1 LINE L1 844 1301 -1206 2245 142 18 2 chr3 157624742 157625268 -60411890 - L1PA16 LINE L1 -537 5629 5096 2918 141 53 4 chr3 157625268 157625779 -60411379 + L1PA16 LINE L1 5623 6158 -8 369 299 17 128 chr3 157626158 157626446 -60410712 - MIR SINE MIR -4 258 3 2038 123 0 3 chr3 157626468 157626753 -60410405 + AluSx SINE Alu 1 284 -28 318 50 0 0 chr3 157626758 157626798 -60410360 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 2837 250 49 26 chr3 157626802 157628024 -60409134 + L1ME2 LINE L1 4911 6163 -1 400 319 64 41 chr3 157628443 157628835 -60408323 + L1ME LINE L1 5415 5815 -306 186 43 0 0 chr3 157628916 157628939 -60408219 + (CA)n Simple_repeat Simple_repeat 1 23 0 31 26 0 0 chr3 157629882 157629920 -60407238 + AT_rich Low_complexity Low_complexity 1 38 0 713 293 28 115 chr3 157630241 157630942 -60406216 - L2 LINE L2 -292 3021 2382 587 291 48 9 chr3 157630979 157631189 -60405969 - LTR16A1 LTR ERVL -17 440 223 1020 220 43 98 chr3 157631298 157631694 -60405464 + MLT1A2 LTR MaLR 1 374 0 215 309 217 0 chr3 157632617 157632769 -60404389 - L3 LINE CR1 -23 1554 1370 676 235 108 10 chr3 157632926 157633130 -60404028 - MIR SINE MIR -24 238 15 1273 124 45 10 chr3 157633152 157633353 -60403805 - AluY SINE Alu -6 305 98 22 56 0 0 chr3 157634203 157634239 -60402919 + AT_rich Low_complexity Low_complexity 1 36 0 28 29 0 0 chr3 157634262 157634297 -60402861 + AT_rich Low_complexity Low_complexity 1 35 0 224 367 0 0 chr3 157634307 157634397 -60402761 - MIR SINE MIR -17 245 156 232 211 0 0 chr3 157634531 157634588 -60402570 + MER57A LTR ERV1 347 403 0 559 217 9 9 chr3 157634800 157634915 -60402243 - LTR45 LTR ERV1 0 525 411 2782 187 8 8 chr3 157635449 157635974 -60401184 - LTR45 LTR ERV1 0 525 1 310 345 26 31 chr3 157636063 157636257 -60400901 + MLT1J LTR MaLR 246 438 -73 700 193 14 0 chr3 157636303 157636443 -60400715 + LTR45 LTR ERV1 63 204 -321 318 26 0 0 chr3 157636677 157636716 -60400442 + (CA)n Simple_repeat Simple_repeat 1 39 0 362 309 71 82 chr3 157636803 157637097 -60400061 - L1ME4a LINE L1 -99 6022 5732 4337 218 33 27 chr3 157637108 157638223 -60398935 - L1MD2 LINE L1 -3 6356 5236 925 269 22 45 chr3 157638228 157638540 -60398618 - MLT1A2 LTR MaLR -4 370 66 717 152 138 0 chr3 157638645 157638790 -60398368 + AluSg/x SINE Alu 134 298 -12 1925 253 63 21 chr3 157638810 157639622 -60397536 - L1MD2 LINE L1 -984 5162 4317 255 324 215 23 chr3 157641359 157641615 -60395543 - L3 LINE CR1 -109 1468 1164 266 239 0 60 chr3 157641677 157641744 -60395414 - L2 LINE L2 -5 3308 3246 709 320 4 9 chr3 157641761 157641992 -60395166 - MIR SINE MIR -5 257 28 209 333 119 43 chr3 157642307 157642517 -60394641 - L3 LINE CR1 -569 1008 783 256 309 65 50 chr3 157643372 157643511 -60393647 - MIR3 SINE MIR -63 145 5 301 316 85 50 chr3 157643667 157643949 -60393209 - LTR16A1 LTR ERVL 0 457 166 319 233 14 27 chr3 157644096 157644169 -60392989 - FLAM_A SINE Alu -15 118 47 23 33 0 0 chr3 157644259 157644289 -60392869 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr3 157644899 157644922 -60392236 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 157644999 157645021 -60392137 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 157645310 157645333 -60391825 + AT_rich Low_complexity Low_complexity 1 23 0 336 322 79 25 chr3 157645896 157646414 -60390744 - L1ME LINE L1 -368 5802 5257 399 256 108 14 chr3 157646611 157646834 -60390324 - L1ME LINE L1 -1438 4708 4465 23 0 0 0 chr3 157646875 157646898 -60390260 + AT_rich Low_complexity Low_complexity 1 23 0 2087 138 62 8 chr3 157646946 157647302 -60389856 - THE1C LTR MaLR 0 375 1 9599 125 49 7 chr3 157647302 157648819 -60388339 - THE1C-int LTR MaLR 0 1580 1 1834 119 84 38 chr3 157648819 157649163 -60387995 - THE1C LTR MaLR -15 360 1 249 57 0 0 chr3 157649335 157649370 -60387788 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1866 133 0 15 chr3 157649686 157649956 -60387202 + AluSx SINE Alu 1 266 -46 332 213 147 33 chr3 157650199 157650349 -60386809 - L1ME LINE L1 -3692 2454 2288 224 241 19 0 chr3 157650559 157650613 -60386545 + CT-rich Low_complexity Low_complexity 2 56 0 327 228 55 31 chr3 157651022 157651149 -60386009 - HAL1 LINE L1 -855 1652 1523 303 321 77 14 chr3 157651465 157651674 -60385484 + L1ME4a LINE L1 5742 5963 -158 1457 52 5 47 chr3 157651704 157651917 -60385241 - L1PA4 LINE L1 0 6155 5952 1091 56 0 7 chr3 157651919 157652061 -60385097 + L1PA4 LINE L1 5812 5952 -202 419 353 16 16 chr3 157653191 157653381 -60383777 + MIR3 SINE MIR 19 208 0 591 264 138 11 chr3 157654308 157654569 -60382589 - MER46C DNA MER2_type -43 295 2 185 311 120 55 chr3 157655453 157655636 -60381522 + MIR SINE MIR 51 245 -17 214 318 47 20 chr3 157657865 157657978 -60379180 + MER5A DNA MER1_type 27 154 -35 1176 197 87 63 chr3 157657978 157658277 -60378881 - AluJo SINE Alu -1 311 6 228 356 29 10 chr3 157658974 157659078 -60378080 - MIR SINE MIR -110 152 47 209 234 31 47 chr3 157659709 157659773 -60377385 + CT-rich Low_complexity Low_complexity 2 64 0 1354 208 47 32 chr3 157659917 157660259 -60376899 - MLT1A1 LTR MaLR 0 365 19 366 322 46 23 chr3 157660807 157660981 -60376177 + MER5B DNA MER1_type 1 178 0 405 253 0 0 chr3 157661625 157661712 -60375446 - Charlie8 DNA MER1_type -2223 194 108 198 288 68 0 chr3 157661933 157662006 -60375152 + L2 LINE L2 3180 3257 -56 263 396 110 0 chr3 157662022 157662204 -60374954 - MIR SINE MIR -49 213 12 25 65 0 0 chr3 157662721 157662767 -60374391 + AT_rich Low_complexity Low_complexity 1 46 0 27 62 0 0 chr3 157662902 157662950 -60374208 + AT_rich Low_complexity Low_complexity 1 48 0 5718 108 13 2 chr3 157663116 157664347 -60372811 - L1PA16 LINE L1 -2 6164 4949 29485 59 2 4 chr3 157664347 157670501 -60366657 - L1PA5 LINE L1 -3 6151 11 22 35 0 0 chr3 157671618 157671647 -60365511 + AT_rich Low_complexity Low_complexity 1 29 0 249 171 13 26 chr3 157671780 157671856 -60365302 + GA-rich Low_complexity Low_complexity 2 76 0 776 98 11 40 chr3 157671866 157672040 -60365118 + (GAAA)n Simple_repeat Simple_repeat 2 170 0 1002 224 10 5 chr3 157672060 157672256 -60364902 - MER8 DNA MER2_type 0 239 43 285 245 104 9 chr3 157672675 157672781 -60364377 - LTR33 LTR ERVL -85 436 321 666 306 14 0 chr3 157672842 157673058 -60364100 - LTR33 LTR ERVL -302 219 1 31 44 0 0 chr3 157673282 157673327 -60363831 + AT_rich Low_complexity Low_complexity 1 45 0 199 261 65 0 chr3 157673964 157674010 -60363148 + MIR SINE MIR 16 64 -144 1358 227 39 15 chr3 157674389 157674724 -60362434 - MLT1A1 LTR MaLR 0 365 23 437 62 15 0 chr3 157675588 157675653 -60361505 + (TA)n Simple_repeat Simple_repeat 1 66 0 467 278 68 46 chr3 157675671 157676038 -60361120 - HAL1 LINE L1 -1253 1254 880 278 355 127 0 chr3 157676139 157676328 -60360830 - HAL1 LINE L1 -1676 831 619 661 214 0 0 chr3 157676532 157676658 -60360500 - FRAM SINE Alu -47 129 4 335 294 27 48 chr3 157677303 157677449 -60359709 + L1MB8 LINE L1 6035 6177 -1 30 59 0 0 chr3 157678996 157679047 -60358111 + AT_rich Low_complexity Low_complexity 1 51 0 21 71 0 0 chr3 157680175 157680217 -60356941 + AT_rich Low_complexity Low_complexity 1 42 0 29 28 0 0 chr3 157680255 157680291 -60356867 + AT_rich Low_complexity Low_complexity 1 36 0 2113 104 0 0 chr3 157680493 157680809 -60356349 + AluSc SINE Alu 1 316 0 1341 242 50 59 chr3 157681387 157681809 -60355349 + MLT1D LTR MaLR 1 418 -87 360 212 82 0 chr3 157681805 157681890 -60355268 - MLT1A1 LTR MaLR -102 263 172 * 3737 86 4 4 chr3 157681922 157682420 -60354738 + THE1A-int LTR MaLR 1083 1580 0 2295 110 45 0 chr3 157682424 157682760 -60354398 + THE1A LTR MaLR 5 355 0 670 237 0 13 chr3 157682776 157682928 -60354230 - MLT1A1 LTR MaLR -215 150 1 1176 267 35 3 chr3 157682928 157683269 -60353889 + L1MD1 LINE L1 871 1222 -5318 1829 262 83 9 chr3 157683271 157683908 -60353250 + L1MD1 LINE L1 4013 4696 -1844 3260 207 50 19 chr3 157683952 157684706 -60352452 + L1MD1 LINE L1 5853 6630 -6 565 303 55 5 chr3 157684920 157685138 -60352020 - MARNA DNA Mariner -225 361 133 508 313 90 0 chr3 157686041 157686297 -60350861 + ERVL LTR ERVL 5206 5484 -280 269 298 128 21 chr3 157687178 157687366 -60349792 + L1ME LINE L1 5653 5860 -310 3571 231 31 13 chr3 157687381 157688708 -60348450 - L1MB8 LINE L1 -5 6671 5321 699 262 31 93 chr3 157688792 157689341 -60347817 - L1MB8 LINE L1 -3206 3438 2924 4054 254 76 28 chr3 157689350 157689893 -60347265 - L1MB8 LINE L1 -5053 1489 973 258 56 0 0 chr3 157689893 157689929 -60347229 + (TTTG)n Simple_repeat Simple_repeat 4 39 0 4054 254 76 28 chr3 157689929 157690032 -60347126 - L1MB8 LINE L1 -5569 973 876 246 32 0 0 chr3 157690032 157690063 -60347095 + (TG)n Simple_repeat Simple_repeat 1 31 0 4054 254 76 28 chr3 157690063 157690822 -60346336 - L1MB8 LINE L1 -5666 876 16 25 31 0 0 chr3 157690900 157690932 -60346226 + AT_rich Low_complexity Low_complexity 1 32 0 288 0 0 0 chr3 157692421 157692453 -60344705 + (TG)n Simple_repeat Simple_repeat 2 33 0 40 67 0 0 chr3 157692927 157693002 -60344156 + AT_rich Low_complexity Low_complexity 1 75 0 488 275 30 24 chr3 157694049 157694216 -60342942 + L1MC4 LINE L1 6461 6628 -1414 253 213 0 53 chr3 157694357 157694451 -60342707 + L1MC4 LINE L1 6618 6706 -1336 223 200 35 9 chr3 157694454 157694569 -60342589 + (TA)n Simple_repeat Simple_repeat 1 118 0 578 158 10 75 chr3 157694581 157694743 -60342415 + L1MB8 LINE L1 5745 5902 -281 699 98 27 0 chr3 157694775 157694887 -60342271 + L1MB8 LINE L1 6059 6173 -5 247 180 0 0 chr3 157694916 157694966 -60342192 + L1MC4 LINE L1 7000 7049 -993 1438 225 51 22 chr3 157695005 157695019 -60342139 + L1MC4 LINE L1 7239 7251 -791 890 251 263 53 chr3 157695019 157695509 -60341649 - MLT1E LTR MaLR 0 593 1 1438 225 51 22 chr3 157695509 157695908 -60341250 + L1MC4 LINE L1 7251 7664 -378 * 2655 178 30 19 chr3 157695906 157696228 -60340930 - L1M2 LINE L1 -498 5814 5497 180 111 0 0 chr3 157696228 157696255 -60340903 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 2655 178 30 19 chr3 157696255 157696498 -60340660 - L1M2 LINE L1 -815 5497 5258 1488 262 6 6 chr3 157696498 157696861 -60340297 + MLT1A1 LTR MaLR 3 365 0 2655 178 30 19 chr3 157696861 157697194 -60339964 - L1M2 LINE L1 -1054 5258 4899 1300 189 12 4 chr3 157697187 157697436 -60339722 + L1MB1 LINE L1 5817 6067 -101 * 868 212 38 57 chr3 157697469 157697733 -60339425 + L1MA10 LINE L1 6060 6318 -16 435 234 40 0 chr3 157697787 157697911 -60339247 + L1MC4 LINE L1 7689 7817 -225 24 32 0 0 chr3 157697968 157697999 -60339159 + AT_rich Low_complexity Low_complexity 1 31 0 988 149 40 17 chr3 157698055 157698229 -60338929 + L1PB4 LINE L1 5978 6155 -1 1761 199 22 14 chr3 157698373 157698730 -60338428 - L1MC1 LINE L1 -62 6271 5912 200 292 0 0 chr3 157699061 157699109 -60338049 - L2 LINE L2 -1 3312 3265 771 182 6 0 chr3 157699109 157699268 -60337890 - L1MA5 LINE L1 -7 6293 6134 477 214 56 8 chr3 157699295 157699421 -60337737 + L1MA4 LINE L1 5987 6118 -182 270 358 128 21 chr3 157699463 157699706 -60337452 + L2 LINE L2 2871 3139 -174 231 352 0 0 chr3 157699910 157699981 -60337177 + L2 LINE L2 3242 3312 -1 183 80 0 0 chr3 157700009 157700034 -60337124 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 339 353 32 13 chr3 157700129 157700285 -60336873 - L2 LINE L2 -248 3024 2866 503 69 14 0 chr3 157701225 157701297 -60335861 + (TTTTC)n Simple_repeat Simple_repeat 2 74 0 195 270 111 0 chr3 157701929 157701992 -60335166 + MIR SINE MIR 125 194 -68 22 0 0 0 chr3 157703323 157703345 -60333813 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr3 157703469 157703496 -60333662 + AT_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chr3 157704369 157704396 -60332762 + AT_rich Low_complexity Low_complexity 1 27 0 682 25 0 0 chr3 157704396 157704475 -60332683 - L1PA4 LINE L1 -66 6089 6011 1223 89 0 0 chr3 157704475 157704633 -60332525 + AluY SINE Alu 137 294 -17 21 0 0 0 chr3 157705057 157705078 -60332080 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr3 157705417 157705446 -60331712 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 157705686 157705708 -60331450 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr3 157706515 157706550 -60330608 + AT_rich Low_complexity Low_complexity 1 35 0 750 193 7 7 chr3 157707797 157707947 -60329211 - FRAM SINE Alu -13 153 4 1145 199 60 34 chr3 157708077 157708428 -60328730 + MER46B DNA MER2_type 2 236 0 31 44 0 0 chr3 157708441 157708486 -60328672 + AT_rich Low_complexity Low_complexity 1 45 0 1937 266 53 22 chr3 157710106 157710626 -60326532 - L1MC2 LINE L1 -16 8210 7707 953 227 68 68 chr3 157710626 157710991 -60326167 - MLT1A1 LTR MaLR 0 365 1 1937 266 53 22 chr3 157710991 157711198 -60325960 - L1MC2 LINE L1 -519 7707 6555 1011 223 48 95 chr3 157711204 157711616 -60325542 - L1MC2 LINE L1 -487 6095 5708 977 259 61 23 chr3 157711622 157712437 -60324721 - L1MC2 LINE L1 -832 5732 4838 1590 159 62 56 chr3 157712472 157712811 -60324347 - MLT1B LTR MaLR 0 390 50 209 189 0 0 chr3 157712837 157712874 -60324284 + CT-rich Low_complexity Low_complexity 2 38 0 22 0 0 0 chr3 157712898 157712920 -60324238 + AT_rich Low_complexity Low_complexity 1 22 0 990 308 114 22 chr3 157712978 157713602 -60323556 - L1MC2 LINE L1 -4925 1121 441 1630 213 54 56 chr3 157713786 157714251 -60322907 + MLT1C LTR MaLR 4 467 0 1244 130 0 4 chr3 157714382 157714651 -60322507 - THE1B LTR MaLR 0 364 1 10008 118 53 5 chr3 157714651 157716158 -60321000 - THE1B-int LTR MaLR 0 1580 1 2327 135 3 3 chr3 157716158 157716522 -60320636 - THE1B LTR MaLR 0 364 1 287 276 55 73 chr3 157716561 157716833 -60320325 - L1MC2 LINE L1 -5751 294 28 260 137 20 0 chr3 157718235 157718286 -60318872 + (TA)n Simple_repeat Simple_repeat 1 52 0 23 0 0 0 chr3 157718399 157718422 -60318736 + AT_rich Low_complexity Low_complexity 1 23 0 335 326 53 8 chr3 157718805 157718937 -60318221 - MIR SINE MIR -33 229 92 515 249 77 48 chr3 157719155 157719364 -60317794 - MER20 DNA MER1_type 0 219 5 203 290 188 28 chr3 157719525 157719701 -60317457 - MIR SINE MIR -10 252 49 21 82 0 0 chr3 157719741 157719790 -60317368 + AT_rich Low_complexity Low_complexity 1 49 0 2070 214 62 19 chr3 157721149 157721635 -60315523 - MLT2B2 LTR ERVL -8 507 1 216 200 67 0 chr3 157721730 157721775 -60315383 - MIR SINE MIR -117 145 98 23 0 0 0 chr3 157721815 157721838 -60315320 + AT_rich Low_complexity Low_complexity 1 23 0 386 311 75 16 chr3 157721879 157722255 -60314903 - HAL1 LINE L1 -136 2371 1974 704 282 37 8 chr3 157722290 157722531 -60314627 - HAL1 LINE L1 -611 1896 1649 277 326 95 48 chr3 157723090 157723406 -60313752 + HERV16 LTR ERVL 879 1209 -3787 1706 186 3 22 chr3 157723597 157723915 -60313243 - AluJb SINE Alu 0 312 1 753 237 171 5 chr3 157723923 157724134 -60313024 + MLT1A1 LTR MaLR 1 246 -119 1765 118 7 32 chr3 157724140 157724420 -60312738 + AluSx SINE Alu 1 273 -39 219 36 0 0 chr3 157724420 157724448 -60312710 + (TC)n Simple_repeat Simple_repeat 2 29 0 207 0 0 0 chr3 157724447 157724470 -60312688 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 1059 117 0 0 chr3 157724469 157724631 -60312527 + (TA)n Simple_repeat Simple_repeat 1 162 0 201 138 0 0 chr3 157724731 157724760 -60312398 + (CATATA)n Simple_repeat Simple_repeat 4 32 0 327 322 0 0 chr3 157724761 157724851 -60312307 + L1MC4 LINE L1 6614 6703 -1339 * 401 256 0 0 chr3 157724771 157724861 -60312297 - L1MC4 LINE L1 -1339 6703 6614 491 221 26 0 chr3 157724866 157724979 -60312179 + MLT1A1 LTR MaLR 250 365 0 453 366 128 0 chr3 157725396 157725694 -60311464 + HERV16 LTR ERVL 1911 2246 -3518 317 340 101 19 chr3 157725695 157725854 -60311304 + MLT1H LTR MaLR 162 333 -216 475 285 30 12 chr3 157725993 157726158 -60311000 + MLT1H LTR MaLR 382 549 0 342 250 0 13 chr3 157726338 157726414 -60310744 + MER96 DNA MER1_type? 98 172 -3 251 294 0 0 chr3 157727099 157727167 -60309991 + MLT1-int LTR MaLR 812 879 -492 437 285 166 46 chr3 157727663 157727947 -60309211 + MLT1H LTR MaLR 232 549 0 21 36 0 0 chr3 157727984 157728012 -60309146 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr3 157728326 157728351 -60308807 + AT_rich Low_complexity Low_complexity 1 25 0 35 71 0 0 chr3 157728401 157728471 -60308687 + AT_rich Low_complexity Low_complexity 1 70 0 516 151 0 0 chr3 157729195 157729281 -60307877 - AluSg/x SINE Alu -7 302 217 1242 82 0 24 chr3 157729281 157729451 -60307707 - AluY SINE Alu -145 166 1 221 274 32 0 chr3 157730035 157730097 -60307061 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 25 102 0 0 chr3 157730338 157730426 -60306732 + AT_rich Low_complexity Low_complexity 1 88 0 1164 249 29 40 chr3 157730503 157730881 -60306277 - MLT1A2 LTR MaLR 0 374 1 35 41 0 0 chr3 157733922 157733971 -60303187 + AT_rich Low_complexity Low_complexity 1 49 0 480 280 221 23 chr3 157735234 157735719 -60301439 + L1M4 LINE L1 4158 4738 -1408 361 278 0 22 chr3 157736057 157736147 -60301011 + L2 LINE L2 3002 3089 -224 530 271 100 12 chr3 157737287 157737457 -60299701 + MIR SINE MIR 77 261 -1 342 395 38 0 chr3 157737887 157738097 -60299061 + L1ME LINE L1 84 301 -6095 691 284 155 18 chr3 157738201 157738704 -60298454 + L1ME LINE L1 1262 1833 -4563 23 33 0 0 chr3 157738707 157738737 -60298421 + AT_rich Low_complexity Low_complexity 1 30 0 248 313 17 9 chr3 157738757 157738872 -60298286 + L1ME LINE L1 1951 2066 -4330 928 243 24 9 chr3 157738876 157739086 -60298072 + MER20 DNA MER1_type 7 219 0 788 279 77 19 chr3 157739174 157739801 -60297357 + L1ME LINE L1 2149 2773 -3442 1853 132 73 22 chr3 157739801 157740158 -60297000 + THE1C LTR MaLR 1 375 0 541 289 122 5 chr3 157740178 157740555 -60296603 + L1ME LINE L1 2848 3268 -2947 1510 291 33 6 chr3 157740617 157740674 -60296484 + L1ME LINE L1 4477 4531 -1684 1570 215 0 13 chr3 157740674 157740985 -60296173 + AluJb SINE Alu 1 307 -5 1510 291 33 6 chr3 157740985 157741594 -60295564 + L1ME LINE L1 4531 5161 -1054 810 284 66 4 chr3 157741622 157741983 -60295175 + L1ME LINE L1 5249 5637 -596 1273 220 35 43 chr3 157742295 157742663 -60294495 + MLT1A1 LTR MaLR 1 365 0 232 130 117 39 chr3 157743006 157743083 -60294075 - Charlie2a DNA MER1_type -35 2827 2745 411 248 103 7 chr3 157743321 157743466 -60293692 - Charlie2a DNA MER1_type -1216 1646 1488 854 258 33 59 chr3 157743662 157743968 -60293190 - Charlie2a DNA MER1_type -2564 298 1 207 204 0 0 chr3 157745823 157745867 -60291291 + (TTA)n Simple_repeat Simple_repeat 2 45 0 347 339 55 6 chr3 157745947 157746112 -60291046 - MIR SINE MIR -86 176 4 5153 154 12 31 chr3 157746374 157748013 -60289145 - L1PA15 LINE L1 -3 6162 4523 23 68 0 0 chr3 157748818 157748862 -60288296 + AT_rich Low_complexity Low_complexity 1 44 0 306 348 136 7 chr3 157748943 157749098 -60288060 - MER5B DNA MER1_type -3 175 1 295 316 146 25 chr3 157750301 157750624 -60286534 + HAL1b LINE L1 83 444 -904 645 108 0 0 chr3 157750853 157750946 -60286212 + L1MA3 LINE L1 6213 6305 0 23 78 0 0 chr3 157751185 157751236 -60285922 + AT_rich Low_complexity Low_complexity 1 51 0 333 343 151 43 chr3 157752454 157752891 -60284267 + L2 LINE L2 2829 3312 -1 488 223 138 100 chr3 157753877 157754325 -60282833 + LTR37B LTR ERV1 4 468 0 23 0 0 0 chr3 157755830 157755853 -60281305 + AT_rich Low_complexity Low_complexity 1 23 0 2065 107 4 0 chr3 157755853 157756134 -60281024 + AluSp SINE Alu 21 302 -11 32 26 0 0 chr3 157756280 157756319 -60280839 + AT_rich Low_complexity Low_complexity 1 39 0 191 382 44 0 chr3 157757540 157757608 -60279550 + L3 LINE CR1 225 295 -1282 656 239 32 16 chr3 157757758 157757946 -60279212 + MIR SINE MIR 72 262 0 1659 279 85 34 chr3 157757951 157758538 -60278620 + MLT1E2 LTR MaLR 1 617 -9 234 62 0 0 chr3 157759287 157759319 -60277839 + (CA)n Simple_repeat Simple_repeat 2 33 0 1696 163 3 7 chr3 157759569 157759851 -60277307 - AluSx SINE Alu -16 296 16 1155 98 0 0 chr3 157759853 157760016 -60277142 + L1PA11 LINE L1 6009 6171 -3 2179 104 3 3 chr3 157760768 157761075 -60276083 - AluSp SINE Alu -6 307 1 335 289 33 44 chr3 157761612 157761792 -60275366 + L1MA8 LINE L1 2490 2667 -3479 * 1008 220 48 37 chr3 157761790 157761929 -60275229 - L1MA5 LINE L1 -387 5913 5777 450 0 0 0 chr3 157761929 157761979 -60275179 + (TA)n Simple_repeat Simple_repeat 2 51 0 1008 220 48 37 chr3 157761979 157762134 -60275024 - L1MA5 LINE L1 -523 5777 5616 324 0 0 0 chr3 157762414 157762450 -60274708 + (TA)n Simple_repeat Simple_repeat 2 37 0 5456 182 16 46 chr3 157762452 157764172 -60272986 - L1M2 LINE L1 -520 5780 4119 862 254 18 21 chr3 157764169 157764404 -60272754 + L1MA8 LINE L1 2671 2906 -3240 * 2434 72 0 3 chr3 157764404 157764710 -60272448 + AluY SINE Alu 1 305 -6 862 254 18 21 chr3 157764710 157764757 -60272401 + L1MA8 LINE L1 2906 2952 -3194 2223 139 6 17 chr3 157764757 157765116 -60272042 - THE1A LTR MaLR 0 355 1 11109 115 5 1 chr3 157765121 157766689 -60270469 - THE1A-int LTR MaLR -7 1573 1 2285 117 14 8 chr3 157766691 157767042 -60270116 - THE1A LTR MaLR -2 353 1 1301 208 89 5 chr3 157767043 157767447 -60269711 + L1MA8 LINE L1 2949 3386 -2760 * 4376 204 61 17 chr3 157767435 157767582 -60269576 + L1MA8 LINE L1 4050 4189 -1957 2053 133 7 0 chr3 157767582 157767875 -60269283 + AluSx SINE Alu 3 297 -15 4376 204 61 17 chr3 157767875 157768844 -60268314 + L1MA8 LINE L1 4189 5215 -931 4338 172 41 38 chr3 157768891 157769682 -60267476 + L1MA8 LINE L1 5328 6124 -167 2356 97 0 0 chr3 157769682 157769990 -60267168 + AluSx SINE Alu 5 312 0 4338 172 41 38 chr3 157769990 157770155 -60267003 + L1MA8 LINE L1 6124 6287 -4 252 288 45 9 chr3 157770430 157770541 -60266617 + MIR SINE MIR 148 262 0 342 300 90 47 chr3 157770935 157771168 -60265990 - L1ME4a LINE L1 -45 6076 5834 198 362 81 16 chr3 157771647 157771893 -60265265 - L2 LINE L2 -1108 2206 1945 24 0 0 0 chr3 157771910 157771934 -60265224 + AT_rich Low_complexity Low_complexity 1 24 0 1623 251 45 19 chr3 157772284 157772815 -60264343 - L1M4 LINE L1 -1691 4455 3911 324 345 70 18 chr3 157773296 157773467 -60263691 + MIR3 SINE MIR 23 202 -6 303 279 87 38 chr3 157774637 157774820 -60262338 + MIR SINE MIR 53 244 -18 1280 263 63 43 chr3 157775203 157775657 -60261501 - MER77 LTR ERV1 -4 601 144 421 333 38 12 chr3 157777345 157777585 -60259573 - MER46C DNA MER2_type -31 307 62 2082 169 4 72 chr3 157777615 157777739 -60259419 + L1PA16 LINE L1 5726 5857 -309 1908 145 0 0 chr3 157777739 157778064 -60259094 + AluSx SINE Alu 1 325 0 2082 169 4 72 chr3 157778064 157778411 -60258747 + L1PA16 LINE L1 5857 6166 0 21 36 0 0 chr3 157778911 157778939 -60258219 + AT_rich Low_complexity Low_complexity 1 28 0 356 235 0 0 chr3 157780186 157780267 -60256891 + MLT2B1 LTR ERVL 440 520 0 352 239 8 17 chr3 157780442 157780559 -60256599 - L1MC3 LINE L1 -785 7000 6885 1478 54 5 0 chr3 157780568 157780753 -60256405 - L1PA3 LINE L1 -3 6152 5967 1462 223 123 44 chr3 157781216 157781697 -60255461 + MLT2B1 LTR ERVL 2 520 0 259 341 63 65 chr3 157781827 157782067 -60255091 - L2 LINE L2 -421 2893 2654 1963 146 0 0 chr3 157782067 157782381 -60254777 + AluSx SINE Alu 3 316 0 259 341 63 65 chr3 157782381 157782629 -60254529 - L2 LINE L2 -660 2654 2403 925 130 8 0 chr3 157782641 157782772 -60254386 + AluJb SINE Alu 1 132 -180 303 149 21 0 chr3 157782775 157782822 -60254336 + AluJ/FRAM SINE Alu 233 280 -22 189 0 0 0 chr3 157782822 157782843 -60254315 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 205 143 0 48 chr3 157783103 157783145 -60254013 + (TATG)n Simple_repeat Simple_repeat 3 42 0 23 0 0 0 chr3 157783253 157783276 -60253882 + AT_rich Low_complexity Low_complexity 1 23 0 221 340 33 33 chr3 157783935 157784085 -60253073 - L2 LINE L2 -1 3312 3163 25 0 0 0 chr3 157784411 157784436 -60252722 + AT_rich Low_complexity Low_complexity 1 25 0 27 49 0 0 chr3 157784486 157784527 -60252631 + AT_rich Low_complexity Low_complexity 1 41 0 454 158 53 0 chr3 157784788 157784883 -60252275 + MER50 LTR ERV1 499 598 -136 2679 77 0 11 chr3 157786055 157786417 -60250741 + L1PA7 LINE L1 5797 6154 0 252 0 0 0 chr3 157786421 157786449 -60250709 + (CA)n Simple_repeat Simple_repeat 1 28 0 276 130 0 0 chr3 157786454 157786500 -60250658 + (GA)n Simple_repeat Simple_repeat 2 47 0 1788 304 89 14 chr3 157786500 157787720 -60249438 + L1MEc LINE L1 679 1990 -4406 235 317 78 22 chr3 157787978 157788158 -60249000 - MIR SINE MIR -8 254 65 222 192 0 0 chr3 157788605 157788657 -60248501 + GA-rich Low_complexity Low_complexity 2 53 0 1640 208 109 115 chr3 157789441 157790190 -60246968 + LTR1B LTR ERV1 1 745 -81 471 286 0 8 chr3 157790268 157790387 -60246771 + LTR28 LTR ERV1 899 1016 -4 793 222 21 56 chr3 157792411 157792645 -60244513 - L1MA10 LINE L1 -7 6327 6102 396 100 17 0 chr3 157792648 157792708 -60244450 + L1MB1 LINE L1 6030 6090 -99 207 0 0 0 chr3 157793417 157793440 -60243718 + (CA)n Simple_repeat Simple_repeat 2 24 0 1109 225 0 0 chr3 157794186 157794462 -60242696 - L1MA4 LINE L1 0 6300 6025 1827 102 102 0 chr3 157794503 157794781 -60242377 - AluSx SINE Alu 0 304 1 477 289 151 7 chr3 157795764 157795916 -60241242 + MER5A DNA MER1_type 9 182 -7 225 65 0 0 chr3 157796078 157796109 -60241049 + (TG)n Simple_repeat Simple_repeat 1 31 0 21 36 0 0 chr3 157798135 157798163 -60238995 + AT_rich Low_complexity Low_complexity 1 28 0 1440 239 94 97 chr3 157798613 157799210 -60237948 - LTR1B LTR ERV1 -42 784 188 6464 64 23 0 chr3 157799210 157800194 -60236964 - L1PA7 LINE L1 -8 6146 5135 1440 239 94 97 chr3 157800194 157800382 -60236776 - LTR1B LTR ERV1 -638 188 1 216 0 0 0 chr3 157800386 157800410 -60236748 + (T)n Simple_repeat Simple_repeat 1 24 0 26 50 0 0 chr3 157800888 157800928 -60236230 + AT_rich Low_complexity Low_complexity 1 40 0 5923 74 59 1 chr3 157801800 157802581 -60234577 + LTR12 LTR ERV1 1 826 0 14879 108 22 11 chr3 157802593 157805576 -60231582 + HERV9 LTR ERV1 40 3139 -5260 5902 104 13 13 chr3 157805583 157806448 -60230710 + HERV9 LTR ERV1 4080 4944 -3455 935 86 43 120 chr3 157806451 157806776 -60230382 + Harlequin LTR ERV1 842 1141 -5755 * 6219 99 35 0 chr3 157806774 157807641 -60229517 + Harlequin LTR ERV1 7503 8399 0 6015 69 59 1 chr3 157807641 157808422 -60228736 + LTR12 LTR ERV1 1 826 0 203 162 0 0 chr3 157808440 157808477 -60228681 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 234 319 38 76 chr3 157808868 157809053 -60228105 + L2 LINE L2 2607 2784 -530 421 313 64 44 chr3 157809338 157809587 -60227571 - L2 LINE L2 -2 3311 3058 382 315 123 27 chr3 157809740 157810000 -60227158 - L2 LINE L2 -538 2776 2492 544 281 12 6 chr3 157811337 157811501 -60225657 - Zaphod DNA AcHobo 0 4031 3867 358 219 94 101 chr3 157811845 157811980 -60225178 - Zaphod DNA AcHobo -2982 1049 915 1204 129 5 5 chr3 157811980 157812182 -60224976 + L1MA2 LINE L1 6103 6304 0 358 219 94 101 chr3 157812182 157812470 -60224688 - Zaphod DNA AcHobo -3116 915 629 918 208 42 23 chr3 157812470 157812686 -60224472 - MER58A DNA MER1_type 0 224 5 551 299 36 6 chr3 157816173 157816340 -60220818 + MIR SINE MIR 7 178 -84 21 57 0 0 chr3 157818229 157818264 -60218894 + AT_rich Low_complexity Low_complexity 1 35 0 369 43 0 0 chr3 157821007 157821054 -60216104 + (CA)n Simple_repeat Simple_repeat 2 48 0 184 111 0 0 chr3 157821749 157821776 -60215382 - L2 LINE L2 -9 3304 3278 766 164 22 0 chr3 157821776 157821910 -60215248 + LTR54B LTR ERV1 1 137 -361 234 0 0 0 chr3 157821910 157821936 -60215222 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 755 238 139 4 chr3 157821936 157822217 -60214941 + LTR54B LTR ERV1 179 497 -1 735 267 82 21 chr3 157822229 157822645 -60214513 - L2 LINE L2 -121 3192 2743 699 224 138 5 chr3 157824451 157824647 -60212511 + MLT1G1 LTR MaLR 374 595 0 789 125 0 29 chr3 157824707 157824843 -60212315 + L1PA16 LINE L1 6032 6163 -3 1951 122 11 11 chr3 157824993 157825280 -60211878 + AluSg SINE Alu 4 290 -20 222 239 0 0 chr3 157825419 157825490 -60211668 + (TA)n Simple_repeat Simple_repeat 1 71 0 414 303 77 27 chr3 157825553 157825919 -60211239 + L1MDa LINE L1 2267 2650 -3890 2477 215 47 65 chr3 157825972 157826637 -60210521 - MER82 DNA MER2_type 0 653 1 1343 287 57 16 chr3 157826676 157827536 -60209622 + L1MDa LINE L1 2733 3665 -2875 2149 75 0 17 chr3 157827536 157827828 -60209330 + AluY SINE Alu 7 293 -18 1343 287 57 16 chr3 157827828 157828005 -60209153 + L1MDa LINE L1 3665 3833 -2707 605 264 170 34 chr3 157828001 157828315 -60208843 + L1MB3 LINE L1 4566 4836 -1622 * 183 80 0 0 chr3 157828315 157828340 -60208818 + (TAGA)n Simple_repeat Simple_repeat 1 25 0 605 264 170 34 chr3 157828340 157829036 -60208122 + L1MB3 LINE L1 4836 5715 -743 3116 113 4 0 chr3 157829064 157829531 -60207627 - L1PA13 LINE L1 -2 6161 5693 1184 181 47 0 chr3 157829535 157829767 -60207391 + L1P LINE L1 4549 4791 -1355 530 154 134 13 chr3 157829926 157830075 -60207083 + L1MB3 LINE L1 6016 6182 -1 1426 287 87 45 chr3 157830149 157830790 -60206368 - MER69 DNA AcHobo -558 668 1 1569 260 67 2 chr3 157831116 157831577 -60205581 + MER110 LTR ERV1 1 491 0 216 267 33 0 chr3 157831933 157831993 -60205165 + MIR SINE MIR 80 141 -121 2393 181 5 5 chr3 157832035 157832466 -60204692 - MSTB1 LTR MaLR -1 431 1 1911 215 109 60 chr3 157833614 157834265 -60202893 - L1MC2 LINE L1 -26 6318 5636 1458 188 30 51 chr3 157834274 157834301 -60202857 - MER7A DNA MER2_type -2712 326 300 2565 93 3 0 chr3 157834301 157834655 -60202503 + THE1A LTR MaLR 1 355 0 1458 188 30 51 chr3 157834655 157834962 -60202196 - MER7A DNA MER2_type -2738 300 1 21 0 0 0 chr3 157835336 157835357 -60201801 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 157835394 157835416 -60201742 + AT_rich Low_complexity Low_complexity 1 22 0 5191 176 32 16 chr3 157835573 157837373 -60199785 + L1MA4 LINE L1 4327 6166 -134 186 43 0 0 chr3 157837373 157837396 -60199762 + (CA)n Simple_repeat Simple_repeat 2 24 0 5191 176 32 16 chr3 157837396 157837532 -60199626 + L1MA4 LINE L1 6166 6298 -2 199 373 20 10 chr3 157838094 157838196 -60198962 - MIR3 SINE MIR -24 184 82 183 80 0 0 chr3 157839631 157839656 -60197502 + (TC)n Simple_repeat Simple_repeat 1 25 0 929 229 29 29 chr3 157842379 157842694 -60194464 - Charlie1 DNA MER1_type 0 2761 2447 2384 156 19 16 chr3 157843620 157844051 -60193107 - MSTB1 LTR MaLR 0 432 1 1612 192 27 24 chr3 157844051 157844389 -60192769 - MSTB1-int LTR MaLR -1 1650 1312 1267 308 47 5 chr3 157844403 157844806 -60192352 - MSTB1-int LTR MaLR -615 1036 617 881 180 15 20 chr3 157844806 157845006 -60192152 + MSTB1 LTR MaLR 218 416 -16 1642 196 8 32 chr3 157845039 157845119 -60192039 - MSTB1-int LTR MaLR -1286 365 285 273 75 0 0 chr3 157845119 157845159 -60191999 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1642 196 8 32 chr3 157845159 157845451 -60191707 - MSTB1-int LTR MaLR -1366 285 2 2198 144 90 3 chr3 157845453 157845842 -60191316 - MSTB1 LTR MaLR -1 431 9 580 296 87 0 chr3 157847613 157847785 -60189373 - MIR SINE MIR -10 252 66 1035 229 93 67 chr3 157847787 157847840 -60189318 + L1MEc LINE L1 1626 1676 -4720 1886 118 50 0 chr3 157847840 157848120 -60189038 + AluSx SINE Alu 1 294 -18 1035 229 93 67 chr3 157848120 157848152 -60189006 + L1MEc LINE L1 1676 1706 -4690 234 0 0 0 chr3 157848152 157848178 -60188980 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1035 229 93 67 chr3 157848178 157848566 -60188592 + L1MEc LINE L1 1706 2112 -4284 273 243 29 0 chr3 157848557 157848627 -60188531 + L1MC/D LINE L1 5804 5875 -484 * 30 27 0 0 chr3 157848669 157848706 -60188452 + AT_rich Low_complexity Low_complexity 1 37 0 399 219 63 11 chr3 157849044 157849196 -60187962 + MLT1A1 LTR MaLR 1 230 -135 279 244 115 13 chr3 157849400 157849556 -60187602 - L1MEd LINE L1 -5055 1064 893 24 0 0 0 chr3 157849581 157849605 -60187553 + AT_rich Low_complexity Low_complexity 1 24 0 2123 110 0 0 chr3 157849638 157849951 -60187207 - AluSq SINE Alu 0 316 4 345 109 0 0 chr3 157850422 157850477 -60186681 + (TG)n Simple_repeat Simple_repeat 2 56 0 237 279 57 71 chr3 157850732 157850872 -60186286 - L1MEd LINE L1 -5970 149 12 2297 89 16 0 chr3 157850905 157851209 -60185949 - AluSc SINE Alu 0 309 1 234 0 0 0 chr3 157851309 157851335 -60185823 + (TG)n Simple_repeat Simple_repeat 2 27 0 21 71 0 0 chr3 157851583 157851625 -60185533 + AT_rich Low_complexity Low_complexity 1 42 0 1813 170 46 14 chr3 157853492 157853863 -60183295 - L1MB1 LINE L1 0 6168 5786 2216 176 0 69 chr3 157853867 157853987 -60183171 + L1M3 LINE L1 5165 5292 -876 547 223 8 0 chr3 157853987 157854108 -60183050 - L1PB4 LINE L1 -7 6149 6028 2216 176 0 69 chr3 157854108 157854613 -60182545 + L1M3 LINE L1 5292 5751 -417 426 176 0 0 chr3 157855339 157855424 -60181734 + GA-rich Low_complexity Low_complexity 3 87 0 224 71 0 0 chr3 157855433 157855461 -60181697 + (AGGGGG)n Simple_repeat Simple_repeat 6 33 0 184 262 0 0 chr3 157856464 157856506 -60180652 - MIR SINE MIR -1 261 220 * 660 302 117 13 chr3 157856474 157856772 -60180386 - L2 LINE L2 -17 3296 2968 357 285 26 104 chr3 157857003 157857273 -60179885 - L2 LINE L2 -447 2867 2619 460 306 150 52 chr3 157857274 157857530 -60179628 - L2 LINE L2 -881 2433 2129 3874 175 42 53 chr3 157857530 157858495 -60178663 + LTR13 LTR ERVK 1 954 0 460 306 150 52 chr3 157858495 157858604 -60178554 - L2 LINE L2 -1185 2129 2032 273 294 67 93 chr3 157858615 157858662 -60178496 - L2 LINE L2 -1523 1791 1744 1717 134 202 3 chr3 157858662 157859019 -60178139 - MSTA LTR MaLR 0 428 1 273 294 67 93 chr3 157859019 157859284 -60177874 - L2 LINE L2 -1570 1744 1487 180 363 137 24 chr3 157860051 157860175 -60176983 - L2 LINE L2 -3 3269 3132 1955 128 7 0 chr3 157860325 157860634 -60176524 - AluSq SINE Alu 0 311 1 264 145 0 43 chr3 157861114 157861183 -60175975 + (TA)n Simple_repeat Simple_repeat 2 67 0 204 194 32 32 chr3 157861211 157861304 -60175854 + (TA)n Simple_repeat Simple_repeat 2 94 0 482 79 13 0 chr3 157861820 157861896 -60175262 + (TA)n Simple_repeat Simple_repeat 2 78 0 363 247 0 82 chr3 157861935 157862032 -60175126 + L2 LINE L2 3223 3311 -2 329 293 27 47 chr3 157863753 157863903 -60173255 + MIR SINE MIR 70 216 -46 900 171 27 27 chr3 157863998 157864062 -60173096 - MLT1A1 LTR MaLR 0 365 303 321 26 0 0 chr3 157864062 157864100 -60173058 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 900 171 27 27 chr3 157864100 157864309 -60172849 - MLT1A1 LTR MaLR -62 303 1 472 339 84 9 chr3 157864811 157865038 -60172120 - MIR SINE MIR -14 248 5 352 339 31 42 chr3 157865080 157865272 -60171886 + MIR3 SINE MIR 12 201 -7 1879 171 24 19 chr3 157867213 157867582 -60169576 + THE1C LTR MaLR 1 371 -4 9739 118 43 8 chr3 157867588 157869113 -60168045 + THE1C-int LTR MaLR 3 1580 0 2066 154 11 19 chr3 157869115 157869491 -60167667 + THE1C LTR MaLR 3 375 0 23 54 0 0 chr3 157869521 157869558 -60167600 + AT_rich Low_complexity Low_complexity 1 37 0 23 68 0 0 chr3 157870269 157870313 -60166845 + AT_rich Low_complexity Low_complexity 1 44 0 218 297 22 44 chr3 157870878 157870969 -60166189 - MIR SINE MIR -110 152 64 30 77 0 0 chr3 157871263 157871328 -60165830 + AT_rich Low_complexity Low_complexity 1 65 0 4912 176 25 37 chr3 157871422 157872377 -60164781 + L1MA4 LINE L1 1239 2182 -4383 657 293 49 80 chr3 157872378 157873054 -60164104 - PABL_B LTR ERV1 -2 665 11 1803 161 24 0 chr3 157873117 157873409 -60163749 + AluSx SINE Alu 1 299 -13 3090 233 33 39 chr3 157873409 157874421 -60162737 + L1MA4 LINE L1 2194 3199 -4366 678 185 53 40 chr3 157874549 157874776 -60162382 + L1MA4 LINE L1 3268 3497 -4068 461 157 0 45 chr3 157874783 157874917 -60162241 + GA-rich Low_complexity Low_complexity 4 131 0 2511 234 45 3 chr3 157874934 157875650 -60161508 + L1MA4 LINE L1 3460 4205 -3360 2305 78 3 0 chr3 157875651 157875935 -60161223 - AluY SINE Alu -14 297 13 5838 200 20 10 chr3 157876076 157877363 -60159795 + L1MA4 LINE L1 4681 5980 -1585 1330 231 23 4 chr3 157877363 157877623 -60159535 - MER52A LTR ERV1 0 1755 1491 932 186 15 207 chr3 157877621 157877950 -60159208 - MER52A LTR ERV1 -428 861 603 * 4982 164 42 21 chr3 157877950 157879637 -60157521 + L1MA4 LINE L1 5995 7716 -3 324 267 8 58 chr3 157879676 157879796 -60157362 - MLT2E LTR ERVL -69 559 446 2006 233 114 6 chr3 157879809 157880330 -60156828 - MER90 LTR ERV1 0 614 3 448 309 93 36 chr3 157880352 157880546 -60156612 - MLT2E LTR ERVL -237 391 187 412 364 13 0 chr3 157880546 157880700 -60156458 - MIR SINE MIR -94 168 13 426 270 105 68 chr3 157880720 157881157 -60156001 + L1MC/D LINE L1 5373 5820 -406 28 71 0 0 chr3 157881517 157881573 -60155585 + AT_rich Low_complexity Low_complexity 1 56 0 183 175 32 16 chr3 157882123 157882186 -60154972 + (TA)n Simple_repeat Simple_repeat 1 64 0 216 200 0 0 chr3 157882229 157882279 -60154879 + (TA)n Simple_repeat Simple_repeat 1 50 0 1729 194 42 6 chr3 157882289 157882624 -60154534 - MER7A DNA MER2_type 0 346 2 22 0 0 0 chr3 157884603 157884625 -60152533 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr3 157884765 157884788 -60152370 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1751 118 98 0 chr3 157884791 157885046 -60152112 - AluSg SINE Alu -30 280 1 550 190 45 116 chr3 157885208 157885450 -60151708 - MER96B DNA MER1_type? 0 417 193 1977 191 91 24 chr3 157885535 157885692 -60151466 + MLT2B2 LTR ERVL 1 146 -369 4255 94 101 2 chr3 157885692 157886318 -60150840 + LTR12 LTR ERV1 1 688 0 1977 191 91 24 chr3 157886318 157886610 -60150548 + MLT2B2 LTR ERVL 146 480 -35 232 289 0 0 chr3 157886610 157886700 -60150458 + (TA)n Simple_repeat Simple_repeat 2 91 0 384 22 0 0 chr3 157887125 157887170 -60149988 + (TG)n Simple_repeat Simple_repeat 2 46 0 2431 76 0 0 chr3 157887187 157887490 -60149668 - AluY SINE Alu -8 303 1 200 211 0 0 chr3 157887897 157887935 -60149223 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 216 242 45 30 chr3 157889137 157889203 -60147955 - MIR SINE MIR 0 262 196 327 289 24 66 chr3 157889717 157889883 -60147275 - MIR SINE MIR -92 170 12 1985 121 0 4 chr3 157889963 157890282 -60146876 - AluSq SINE Alu 0 320 3 25 51 0 0 chr3 157890364 157890403 -60146755 + AT_rich Low_complexity Low_complexity 1 39 0 390 308 7 53 chr3 157891250 157891436 -60145722 - MIR SINE MIR -65 143 16 441 270 16 87 chr3 157891462 157891647 -60145511 + MIR SINE MIR 14 185 -77 782 228 82 59 chr3 157891652 157891955 -60145203 - AluJo SINE Alu 0 312 3 21 36 0 0 chr3 157892024 157892052 -60145106 + AT_rich Low_complexity Low_complexity 1 28 0 282 310 52 17 chr3 157892998 157893114 -60144044 - MIR SINE MIR -119 143 24 300 188 69 7 chr3 157893280 157893446 -60143712 - LTR37B LTR ERV1 -3 423 271 29 47 0 0 chr3 157893446 157893489 -60143669 + AT_rich Low_complexity Low_complexity 1 43 0 1066 180 14 5 chr3 157893491 157893708 -60143450 - L1MA4 LINE L1 -14 6286 6068 26 74 0 0 chr3 157893927 157893981 -60143177 + AT_rich Low_complexity Low_complexity 1 54 0 229 236 28 0 chr3 157894240 157894312 -60142846 + A-rich Low_complexity Low_complexity 1 74 0 208 306 0 0 chr3 157894976 157895038 -60142120 + L2 LINE L2 2991 3052 -220 23 33 0 0 chr3 157895045 157895075 -60142083 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr3 157897001 157897039 -60140119 + AT_rich Low_complexity Low_complexity 1 38 0 25 40 0 20 chr3 157897188 157897226 -60139932 + AT_rich Low_complexity Low_complexity 1 39 -10 1882 110 33 7 chr3 157897226 157897527 -60139631 + L1PA10 LINE L1 5855 6163 -5 25 40 0 20 chr3 157897527 157897538 -60139620 + AT_rich Low_complexity Low_complexity 39 49 0 206 392 43 39 chr3 157897828 157898060 -60139098 - L2 LINE L2 -190 3082 2850 3031 142 16 0 chr3 157898333 157898833 -60138325 + L1PA16 LINE L1 5650 6157 -9 32 0 0 0 chr3 157898841 157898873 -60138285 + AT_rich Low_complexity Low_complexity 1 32 0 21 71 0 0 chr3 157899016 157899058 -60138100 + AT_rich Low_complexity Low_complexity 1 42 0 331 365 143 0 chr3 157899656 157899922 -60137236 + L2 LINE L2 3005 3308 -5 195 322 11 44 chr3 157900159 157900249 -60136909 - L2 LINE L2 -1 3271 3185 429 272 132 0 chr3 157900351 157900579 -60136579 + MER112 DNA MER1_type 1 258 -2 862 269 52 19 chr3 157900767 157901035 -60136123 + MLT1E1 LTR MaLR 1 277 -377 510 211 216 5 chr3 157901063 157901262 -60135896 + MLT1E1 LTR MaLR 377 617 -7 25 0 0 0 chr3 157901360 157901385 -60135773 + AT_rich Low_complexity Low_complexity 1 25 0 311 400 29 19 chr3 157903309 157903514 -60133644 + L2 LINE L2 2428 2634 -680 9932 164 21 58 chr3 157904885 157907659 -60129499 + L1P3 LINE L1 10 2786 -3675 6444 80 18 4 chr3 157907664 157908932 -60128226 + L1PA8 LINE L1 4889 6169 -3 49 42 0 31 chr3 157909004 157909100 -60128058 + AT_rich Low_complexity Low_complexity 1 93 0 1595 173 7 21 chr3 157909120 157909440 -60127718 + AluJb SINE Alu 5 320 0 2295 299 14 2 chr3 157909461 157910054 -60127104 + L1PA15 LINE L1 11 610 -6177 957 309 40 38 chr3 157910137 157910557 -60126601 + L1PA15 LINE L1 1170 1590 -5197 * 7133 209 54 8 chr3 157910548 157912418 -60124740 + L1PA15 LINE L1 4187 6142 -674 271 194 15 0 chr3 157912591 157912658 -60124500 - L1MC4 LINE L1 -1339 6703 6636 3525 175 4 30 chr3 157912660 157913243 -60123915 + L1PA15 LINE L1 6140 6704 -112 2533 118 0 27 chr3 157913243 157913617 -60123541 + THE1B LTR MaLR 1 364 0 3525 175 4 30 chr3 157913617 157913725 -60123433 + L1PA15 LINE L1 6704 6813 -3 264 91 0 0 chr3 157913739 157913783 -60123375 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 508 58 26 79 chr3 157917143 157917333 -60119825 + (TA)n Simple_repeat Simple_repeat 1 180 0 264 363 0 0 chr3 157917473 157917575 -60119583 + MER89-int LTR ERV1 5224 5325 -1476 277 362 21 21 chr3 157918040 157918228 -60118930 + MER89-int LTR ERV1 6303 6490 -311 183 329 86 0 chr3 157918934 157919004 -60118154 - L3b LINE CR1 -3 1580 1505 25714 143 12 16 chr3 157919993 157922502 -60114656 + L1PA8A LINE L1 123 2640 -3806 202 0 29 57 chr3 157922502 157922537 -60114621 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 25714 143 12 16 chr3 157922537 157926315 -60110843 + L1PA8A LINE L1 2640 6446 0 432 264 113 31 chr3 157926809 157926968 -60110190 - MER5B DNA MER1_type -6 172 1 2420 296 148 39 chr3 157927448 157929084 -60108074 + L2 LINE L2 145 1959 -1355 531 334 69 29 chr3 157929167 157929471 -60107687 - MLT1J2 LTR MaLR -126 324 9 651 304 82 36 chr3 157929474 157929861 -60107297 + L2 LINE L2 2787 3189 -124 30 45 0 0 chr3 157929902 157929946 -60107212 + AT_rich Low_complexity Low_complexity 1 44 0 2551 51 0 0 chr3 157931079 157931375 -60105783 - AluY SINE Alu -15 296 1 233 340 78 10 chr3 157931678 157931781 -60105377 + MIR SINE MIR 40 149 -113 505 373 28 16 chr3 157931882 157932201 -60104957 + MLT1I LTR MaLR 79 401 -8 2178 122 0 0 chr3 157932323 157932618 -60104540 + AluSx SINE Alu 1 295 -17 224 361 56 28 chr3 157934312 157934528 -60102630 + L2 LINE L2 2503 2724 -590 226 368 21 0 chr3 157934700 157934795 -60102363 - Charlie8 DNA MER1_type -2320 97 1 297 329 24 55 chr3 157935317 157935481 -60101677 + MIR SINE MIR 56 214 -48 266 229 0 29 chr3 157936109 157936179 -60100979 - MLT1K LTR MaLR -326 262 195 21 0 0 0 chr3 157936347 157936368 -60100790 + AT_rich Low_complexity Low_complexity 1 21 0 386 111 0 0 chr3 157936390 157936444 -60100714 - MER70A LTR ERVL 0 472 419 876 189 15 78 chr3 157936451 157936657 -60100501 - MER70-int LTR ERVL -2444 2579 2387 1880 179 22 7 chr3 157936692 157937157 -60100001 - MER70-int LTR ERVL -2751 2272 1770 21 0 0 0 chr3 157937200 157937221 -60099937 + AT_rich Low_complexity Low_complexity 1 21 0 2346 90 0 3 chr3 157937222 157937523 -60099635 + AluSq SINE Alu 1 300 -13 247 371 55 25 chr3 157940284 157940486 -60096672 - L2 LINE L2 -1206 2108 1901 331 214 87 19 chr3 157943956 157944059 -60093099 - L1MC4a LINE L1 -1927 5881 5772 382 332 69 14 chr3 157944129 157944346 -60092812 - L1MC4a LINE L1 -577 5585 5357 336 24 0 0 chr3 157944846 157944887 -60092271 + (CA)n Simple_repeat Simple_repeat 1 41 0 21 57 0 0 chr3 157945277 157945312 -60091846 + AT_rich Low_complexity Low_complexity 1 35 0 316 66 26 40 chr3 157945526 157945602 -60091556 + (TA)n Simple_repeat Simple_repeat 2 76 0 225 83 0 0 chr3 157945643 157945679 -60091479 + (TA)n Simple_repeat Simple_repeat 2 37 0 340 310 72 122 chr3 157947395 157948003 -60089155 - L2 LINE L2 -456 2858 2324 414 0 0 0 chr3 157948003 157948049 -60089109 + (CA)n Simple_repeat Simple_repeat 2 47 0 340 310 72 122 chr3 157948049 157948494 -60088664 - L2 LINE L2 -990 2324 1858 282 331 26 87 chr3 157949515 157949667 -60087491 - MIR SINE MIR -62 146 45 1351 240 51 78 chr3 157950462 157950896 -60086262 + MLT1E LTR MaLR 170 591 -2 22 0 0 0 chr3 157951574 157951596 -60085562 + AT_rich Low_complexity Low_complexity 1 22 0 333 259 26 26 chr3 157952717 157952833 -60084325 - L2 LINE L2 -279 3034 2919 436 308 8 0 chr3 157953269 157953389 -60083769 + MIR SINE MIR 31 151 -111 4104 130 28 117 chr3 157953390 157954293 -60082865 - LTR12 LTR ERV1 0 826 5 2251 187 34 46 chr3 157954309 157954920 -60082238 - pTR5 LTR ERV1 -1094 1344 741 291 282 0 0 chr3 157954944 157955022 -60082136 + MIR SINE MIR 175 252 -10 26 0 0 0 chr3 157955360 157955386 -60081772 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr3 157955756 157955784 -60081374 + AT_rich Low_complexity Low_complexity 1 28 0 266 295 11 0 chr3 157955893 157955988 -60081170 + L1ME LINE L1 5536 5631 -490 466 269 77 50 chr3 157956034 157956216 -60080942 - L1ME3A LINE L1 -28 6142 5956 222 303 34 45 chr3 157956239 157956328 -60080830 - MIR SINE MIR -172 90 3 288 270 49 112 chr3 157956472 157956757 -60080401 - L2 LINE L2 -10 3303 3037 519 324 121 14 chr3 157956892 157957173 -60079985 - L2 LINE L2 -573 2741 2431 5654 35 1 4 chr3 157957660 157958337 -60078821 + L1PA5 LINE L1 5478 6152 -2 472 216 189 7 chr3 157960212 157960365 -60076793 + MLT1A1 LTR MaLR 5 185 -189 5280 115 37 59 chr3 157960420 157961987 -60075171 - pTR5 LTR ERV1 0 2438 743 480 236 0 9 chr3 157961987 157962097 -60075061 + MLT1A1 LTR MaLR 250 358 -7 515 339 153 28 chr3 157962580 157963082 -60074076 + L3 LINE CR1 1007 1571 -6 1492 239 29 11 chr3 157964088 157964515 -60072643 - MER89 LTR ERV1 -25 534 1 1472 247 119 13 chr3 157964594 157965063 -60072095 + LTR40a LTR ERVL 1 519 0 2227 102 0 0 chr3 157969771 157970064 -60067094 - AluSc SINE Alu -16 293 1 14891 26 1 0 chr3 157970506 157973045 -60064113 + L1PA3 LINE L1 3614 6152 -3 1826 113 4 4 chr3 157973223 157973489 -60063669 + AluSc SINE Alu 29 294 -15 609 301 67 81 chr3 157974137 157974616 -60062542 + MLT1J LTR MaLR 37 508 -3 185 298 202 19 chr3 157974898 157975002 -60062156 + MIR SINE MIR 53 175 -87 24 0 0 0 chr3 157975049 157975073 -60062085 + AT_rich Low_complexity Low_complexity 1 24 0 28 0 0 0 chr3 157975961 157975989 -60061169 + AT_rich Low_complexity Low_complexity 1 28 0 401 93 28 37 chr3 158076518 158076625 -59960533 + (TA)n Simple_repeat Simple_repeat 2 107 0 226 411 23 36 chr3 158078934 158079153 -59958005 + L2 LINE L2 2971 3186 -86 2514 88 42 11 chr3 158079417 158079770 -59957388 - THE1B LTR MaLR 0 364 1 200 371 22 11 chr3 158080303 158080392 -59956766 - MIR SINE MIR -91 117 28 231 299 15 0 chr3 158081831 158081898 -59955260 + (TATATG)n Simple_repeat Simple_repeat 5 72 0 1215 271 25 0 chr3 158081952 158082347 -59954811 + L1MB8 LINE L1 4735 5139 -1007 938 182 98 19 chr3 158082351 158082565 -59954593 - L1MA9 LINE L1 -573 5739 5509 * 1449 191 69 12 chr3 158082551 158082594 -59954564 + L1MA9 LINE L1 5740 5779 -533 369 62 0 0 chr3 158082594 158082642 -59954516 + (CA)n Simple_repeat Simple_repeat 1 48 0 1449 191 69 12 chr3 158082642 158083030 -59954128 + L1MA9 LINE L1 5779 6292 -20 678 220 23 0 chr3 158083046 158083219 -59953939 + L1MB8 LINE L1 5129 5305 -841 2395 236 26 8 chr3 158083227 158083834 -59953324 + L1MB8 LINE L1 5560 6177 -1 1923 226 63 9 chr3 158084991 158085452 -59951706 - MER66B LTR ERV1 0 486 1 2124 152 20 0 chr3 158085453 158085796 -59951362 - MER66B-int LTR ERV1 0 6676 6327 934 147 80 0 chr3 158085767 158085930 -59951228 - MER66-int LTR ERV1 -1715 4961 4786 * 982 167 4 13 chr3 158085926 158086170 -59950988 - MER66-int LTR ERV1 -1635 6121 4608 21 36 0 0 chr3 158087215 158087243 -59949915 + AT_rich Low_complexity Low_complexity 1 28 0 201 250 0 0 chr3 158087468 158087504 -59949654 + L2 LINE L2 3201 3236 -36 25 51 0 0 chr3 158087816 158087855 -59949303 + AT_rich Low_complexity Low_complexity 1 39 0 1724 264 85 37 chr3 158088305 158088978 -59948180 - L1ME1 LINE L1 -4 6162 5458 1616 116 0 0 chr3 158088973 158089215 -59947943 - L1MA1 LINE L1 -330 5972 5731 * 1987 106 34 16 chr3 158089218 158089538 -59947620 + L1MA1 LINE L1 5970 6295 -7 544 231 84 25 chr3 158089560 158089836 -59947322 - L1ME1 LINE L1 -701 5465 5176 572 253 146 0 chr3 158092814 158092972 -59944186 + MER5A DNA MER1_type 9 189 0 1378 257 79 27 chr3 158094169 158094648 -59942510 - MLT1D LTR MaLR 0 505 2 2031 121 10 0 chr3 158094700 158094998 -59942160 - AluSp SINE Alu -12 301 1 687 299 122 30 chr3 158096773 158097248 -59939910 + L1MCc LINE L1 814 1332 -5091 493 226 151 0 chr3 158097264 158097410 -59939748 + L1MCc LINE L1 1441 1608 -5333 1067 274 41 27 chr3 158097414 158098186 -59938972 + L1MCc LINE L1 2602 3361 -3580 570 237 22 7 chr3 158098301 158098436 -59938722 + L1MC4a LINE L1 6405 6541 -1267 2136 121 3 3 chr3 158098557 158098870 -59938288 + AluSp SINE Alu 1 313 0 866 196 33 89 chr3 158098896 158099166 -59937992 - L1PA16 LINE L1 0 6166 5912 23 0 0 0 chr3 158100061 158100084 -59937074 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr3 158100837 158100865 -59936293 + AT_rich Low_complexity Low_complexity 1 28 0 8436 188 20 17 chr3 158100893 158103155 -59934003 + L1M1 LINE L1 14 2947 -4618 7464 178 64 9 chr3 158104018 158106265 -59930893 - L1MA5 LINE L1 -338 6983 4598 234 0 0 0 chr3 158106273 158106299 -59930859 + (ATTG)n Simple_repeat Simple_repeat 2 27 0 649 193 0 8 chr3 158106301 158106420 -59930738 - AluSq/x SINE Alu -195 118 1 2264 250 42 7 chr3 158106480 158107163 -59929995 - L1MA5 LINE L1 -3265 3902 3196 868 202 0 49 chr3 158107176 158107359 -59929799 - AluJo SINE Alu -15 297 124 6153 53 1 1 chr3 158107359 158108126 -59929032 - L1PA5 LINE L1 -16 6138 5372 6687 239 36 36 chr3 158108202 158109004 -59928154 - L1MA5 LINE L1 -3956 3212 2412 372 59 0 0 chr3 158109004 158109055 -59928103 + (TG)n Simple_repeat Simple_repeat 2 52 0 6687 239 36 36 chr3 158109055 158111666 -59925492 - L1MA5 LINE L1 -4756 2412 6 201 342 19 62 chr3 158111783 158111944 -59925214 - L3 LINE CR1 -175 1402 1249 300 317 85 51 chr3 158112132 158112463 -59924695 - L3 LINE CR1 -615 962 621 693 181 62 0 chr3 158112699 158112859 -59924299 + L1MA8 LINE L1 6115 6284 -7 2317 88 0 0 chr3 158113168 158113473 -59923685 - AluY SINE Alu -6 305 1 23 0 0 0 chr3 158113578 158113601 -59923557 + AT_rich Low_complexity Low_complexity 1 23 0 38 39 0 0 chr3 158113958 158114010 -59923148 + AT_rich Low_complexity Low_complexity 1 52 0 21 36 0 0 chr3 158114155 158114183 -59922975 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 158114673 158114694 -59922464 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 158114774 158114797 -59922361 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr3 158114900 158114929 -59922229 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr3 158117107 158117131 -59920027 + AT_rich Low_complexity Low_complexity 1 24 0 1890 142 3 3 chr3 158117137 158117445 -59919713 + AluSg SINE Alu 1 308 0 689 186 31 0 chr3 158117634 158117763 -59919395 - AluJb SINE Alu -17 295 163 2357 174 95 4 chr3 158117782 158118617 -59918541 + L1MA8 LINE L1 4850 5760 -531 674 44 11 0 chr3 158118619 158118709 -59918449 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 1339 162 41 27 chr3 158118709 158119146 -59918012 + L1MA8 LINE L1 5799 6284 -7 335 311 0 0 chr3 158119165 158119255 -59917903 + L1MC4 LINE L1 6614 6703 -1339 280 300 83 42 chr3 158119337 158119457 -59917701 + L2 LINE L2 3146 3270 -2 1027 304 24 51 chr3 158119511 158119922 -59917236 + MLT1J2 LTR MaLR 1 400 -50 198 171 0 0 chr3 158120356 158120397 -59916761 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 236 371 0 21 chr3 158120504 158120601 -59916557 - L2 LINE L2 -612 2702 2608 2156 78 47 3 chr3 158121467 158121763 -59915395 - AluY SINE Alu 0 311 3 21 36 0 0 chr3 158121863 158121891 -59915267 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 158121945 158121966 -59915192 + AT_rich Low_complexity Low_complexity 1 21 0 32 26 0 0 chr3 158122239 158122278 -59914880 + AT_rich Low_complexity Low_complexity 1 39 0 1624 258 99 31 chr3 158122582 158124018 -59913140 - Charlie7 DNA MER1_type -181 2431 845 253 375 115 0 chr3 158124158 158124411 -59912747 - Charlie7 DNA MER1_type -2194 418 137 191 36 36 0 chr3 158124439 158124467 -59912691 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 334 246 9 82 chr3 158124605 158124715 -59912443 + MER5A DNA MER1_type 63 164 -25 189 0 0 0 chr3 158125594 158125615 -59911543 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 5252 210 45 16 chr3 158126650 158128004 -59909154 + L1 LINE L1 2606 3999 -2147 22 70 0 0 chr3 158130002 158130045 -59907113 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr3 158130659 158130681 -59906477 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr3 158131041 158131070 -59906088 + AT_rich Low_complexity Low_complexity 1 29 0 383 228 11 11 chr3 158131337 158131429 -59905729 + MIR3 SINE MIR 81 172 -36 22 35 0 0 chr3 158131433 158131462 -59905696 + AT_rich Low_complexity Low_complexity 1 29 0 715 136 0 7 chr3 158131697 158131816 -59905342 - LTR12 LTR ERV1 0 714 172 308 288 17 0 chr3 158131816 158131934 -59905224 - LTR30 LTR ERV1 -79 643 524 1225 99 132 0 chr3 158131934 158132116 -59905042 - LTR12 LTR ERV1 -456 258 53 253 231 0 0 chr3 158132116 158132168 -59904990 - LTR30 LTR ERV1 -670 52 1 22 0 0 0 chr3 158132330 158132352 -59904806 + AT_rich Low_complexity Low_complexity 1 22 0 252 249 82 116 chr3 158132994 158133227 -59903931 - L1MC5 LINE L1 -32 7929 7705 464 232 83 70 chr3 158133380 158133621 -59903537 - L1MC5 LINE L1 -490 7471 7228 366 143 0 0 chr3 158134292 158134369 -59902789 + (TG)n Simple_repeat Simple_repeat 1 77 0 312 295 134 51 chr3 158134491 158134708 -59902450 - HAL1 LINE L1 -1160 1347 1113 524 254 58 54 chr3 158134984 158135189 -59901969 - LTR16A LTR ERVL -10 440 235 3059 178 15 5 chr3 158135200 158135796 -59901362 + L1MA4 LINE L1 5694 6295 -5 318 344 28 84 chr3 158135814 158136064 -59901094 - LTR16A LTR ERVL -214 236 1 742 325 83 11 chr3 158136392 158136755 -59900403 - MLT1I LTR MaLR -18 391 3 27 73 0 0 chr3 158137668 158137723 -59899435 + AT_rich Low_complexity Low_complexity 1 55 0 1603 117 35 9 chr3 158137792 158138022 -59899136 + AluSq SINE Alu 53 288 -25 25 0 0 0 chr3 158138911 158138936 -59898222 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr3 158140477 158140502 -59896656 + AT_rich Low_complexity Low_complexity 1 25 0 279 256 0 0 chr3 158140833 158140923 -59896235 + (TATG)n Simple_repeat Simple_repeat 3 92 0 * 305 162 15 0 chr3 158140922 158140990 -59896168 + GA-rich Low_complexity Low_complexity 2 70 0 311 380 58 10 chr3 158142196 158142404 -59894754 - MIR SINE MIR -14 248 31 1081 228 64 78 chr3 158142866 158142887 -59894271 + LTR52 LTR ERVL 1 21 -400 2239 101 0 7 chr3 158142887 158143195 -59893963 - AluSg1 SINE Alu -3 306 1 1081 228 64 78 chr3 158143195 158143594 -59893564 + LTR52 LTR ERVL 21 415 -6 476 323 169 39 chr3 158143835 158144191 -59892967 + L2 LINE L2 2871 3272 0 738 189 8 0 chr3 158144994 158145126 -59892032 - FLAM_C SINE Alu -10 133 1 25 31 0 0 chr3 158145763 158145795 -59891363 + AT_rich Low_complexity Low_complexity 1 32 0 1786 263 156 31 chr3 158147722 158149672 -59887486 - Charlie2a DNA MER1_type -508 2354 45 657 228 11 43 chr3 158149998 158150182 -59886976 + MER5B DNA MER1_type 1 178 0 340 207 54 0 chr3 158150654 158150765 -59886393 + (TA)n Simple_repeat Simple_repeat 1 117 0 5957 65 1 0 chr3 158150790 158151542 -59885616 - L1PA7 LINE L1 -6 6148 5396 343 70 0 0 chr3 158151542 158151585 -59885573 + 5S rRNA rRNA 50 92 -29 598 168 23 15 chr3 158152219 158152350 -59884808 - L1ME1 LINE L1 -4 6162 6031 2301 247 99 36 chr3 158152361 158154162 -59882996 - L1ME1 LINE L1 -249 5917 3967 180 0 0 0 chr3 158154162 158154182 -59882976 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 2301 247 99 36 chr3 158154182 158154366 -59882792 - L1ME1 LINE L1 -2199 3967 3796 205 326 140 34 chr3 158154461 158154789 -59882369 - L2 LINE L2 -2463 851 489 2597 234 48 52 chr3 158154967 158155211 -59881947 - MER63C DNA MER1_type -140 920 677 2351 71 0 3 chr3 158155211 158155508 -59881650 - AluY SINE Alu -15 296 1 2597 234 48 52 chr3 158155508 158156175 -59880983 - MER63C DNA MER1_type -383 677 12 403 19 19 0 chr3 158156176 158156228 -59880930 - MLT2A1 LTR ERVL 0 444 392 7557 90 5 8 chr3 158156231 158157274 -59879884 - HERVL-A1 LTR ERVL -4548 1106 67 216 67 0 0 chr3 158157278 158157308 -59879850 + (TA)n Simple_repeat Simple_repeat 1 30 0 2921 64 3 20 chr3 158157309 158157699 -59879459 - MLT2A1 LTR ERVL -61 383 1 22 35 0 0 chr3 158158052 158158081 -59879077 + AT_rich Low_complexity Low_complexity 1 29 0 360 292 191 24 chr3 158158532 158158574 -59878584 + MIR SINE MIR 18 52 -210 1822 203 50 71 chr3 158158574 158159107 -59878051 - MER44D DNA MER2_type -1882 605 28 2221 104 0 16 chr3 158159107 158159415 -59877743 + AluSq SINE Alu 3 305 -8 1822 203 50 71 chr3 158159415 158159443 -59877715 - MER44D DNA MER2_type -2459 28 1 360 292 191 24 chr3 158159443 158159609 -59877549 + MIR SINE MIR 52 261 -1 21 36 0 0 chr3 158159781 158159809 -59877349 + AT_rich Low_complexity Low_complexity 1 28 0 1404 206 128 35 chr3 158160602 158161064 -59876094 + LTR22 LTR ERVK 1 505 -4 2384 79 0 0 chr3 158161421 158161725 -59875433 + AluY SINE Alu 1 304 -7 4851 111 34 31 chr3 158161945 158162717 -59874441 + MER4E LTR ERV1 1 774 -5 268 366 53 72 chr3 158163029 158163291 -59873867 + L2 LINE L2 2953 3209 -63 437 316 45 37 chr3 158163324 158163593 -59873565 + L2 LINE L2 2156 2426 -888 559 306 112 13 chr3 158163603 158163835 -59873323 + MIR SINE MIR 8 262 0 241 308 39 127 chr3 158163835 158164432 -59872726 + L2 LINE L2 2421 2964 -350 205 274 48 16 chr3 158164977 158165039 -59872119 + MIR SINE MIR 28 91 -171 180 247 39 78 chr3 158165407 158165484 -59871674 - MIR SINE MIR -188 74 1 333 98 43 22 chr3 158165675 158165767 -59871391 + (TA)n Simple_repeat Simple_repeat 1 94 0 26 50 0 0 chr3 158165782 158165822 -59871336 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr3 158165933 158165954 -59871204 + AT_rich Low_complexity Low_complexity 1 21 0 2264 152 72 5 chr3 158167085 158167486 -59869672 - MSTA LTR MaLR 0 428 1 2329 124 16 8 chr3 158167523 158167893 -59869265 - THE1C LTR MaLR -2 373 1 8785 137 39 51 chr3 158167893 158169492 -59867666 - THE1C-int LTR MaLR 0 1580 2 1566 147 60 7 chr3 158169493 158169800 -59867358 - THE1C LTR MaLR 0 355 1 23 0 0 0 chr3 158169901 158169924 -59867234 + AT_rich Low_complexity Low_complexity 1 23 0 505 87 0 0 chr3 158170756 158170825 -59866333 + THE1B LTR MaLR 1 69 -295 415 167 31 73 chr3 158170833 158170929 -59866229 - THE1C LTR MaLR -76 299 208 1883 170 61 29 chr3 158170929 158171305 -59865853 - MER61D LTR ERV1 0 501 114 2368 164 5 13 chr3 158171346 158172094 -59865064 - MER61D-int LTR ERV1 0 5217 4428 841 86 0 105 chr3 158172098 158172250 -59864908 - MER61D-int LTR ERV1 -1630 3587 3452 5596 135 9 20 chr3 158172251 158173220 -59863938 - MER61D-int LTR ERV1 -2276 2941 1983 2431 159 28 7 chr3 158173210 158173740 -59863418 - MER61D-int LTR ERV1 -3576 2010 1213 * 549 309 22 47 chr3 158173848 158174123 -59863035 - HUERS-P1 LTR ERV1 -3882 2381 2114 2412 87 3 0 chr3 158174286 158174596 -59862562 - AluY SINE Alu 0 311 1 10433 187 48 41 chr3 158174596 158177821 -59859337 - L1 LINE L1 -3633 3932 11 290 313 20 7 chr3 158178625 158178772 -59858386 + L1MEc LINE L1 39 187 -6209 2122 150 28 3 chr3 158179137 158179491 -59857667 + THE1B LTR MaLR 1 363 -1 656 110 26 11 chr3 158179491 158179596 -59857562 - HUERS-P3b LTR ERV1 -4152 1065 973 41934 37 23 1 chr3 158179606 158185611 -59851547 - L1PA3 LINE L1 0 6155 15 351 65 0 0 chr3 158185614 158185660 -59851498 - HUERS-P3b LTR ERV1 -4228 989 944 1817 174 9 56 chr3 158185660 158186508 -59850650 - HUERS-P3b LTR ERV1 -4377 2644 182 506 257 14 54 chr3 158186622 158186770 -59850388 - HUERS-P3b LTR ERV1 -5074 143 2 1874 180 67 30 chr3 158186770 158187171 -59849987 - MER61D LTR ERV1 0 501 86 1073 176 44 40 chr3 158187176 158187403 -59849755 - THE1C LTR MaLR -147 228 1 224 393 56 17 chr3 158188241 158188419 -59848739 - MIR SINE MIR -77 185 1 21 0 0 0 chr3 158188548 158188569 -59848589 + AT_rich Low_complexity Low_complexity 1 21 0 280 86 0 0 chr3 158188618 158188653 -59848505 - U2 snRNA snRNA -153 35 1 2075 88 51 10 chr3 158188954 158189248 -59847910 - AluSp SINE Alu -3 310 5 308 257 66 82 chr3 158189430 158189613 -59847545 + MIR SINE MIR 31 210 -52 2058 126 0 0 chr3 158190328 158190662 -59846496 + AluSx SINE Alu 1 334 0 22 35 0 0 chr3 158190713 158190742 -59846416 + AT_rich Low_complexity Low_complexity 1 29 0 457 294 79 51 chr3 158190765 158190979 -59846179 + MIR SINE MIR 9 228 -34 28 0 0 0 chr3 158191479 158191507 -59845651 + AT_rich Low_complexity Low_complexity 1 28 0 34 55 0 0 chr3 158191857 158191912 -59845246 + AT_rich Low_complexity Low_complexity 1 55 0 203 269 15 0 chr3 158192169 158192236 -59844922 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 26 0 0 0 chr3 158192259 158192285 -59844873 + AT_rich Low_complexity Low_complexity 1 26 0 1277 212 57 20 chr3 158192371 158192668 -59844490 - MLT1A1 LTR MaLR -53 312 5 1227 267 63 67 chr3 158192744 158193239 -59843919 + L1M4b LINE L1 102 594 -6265 470 244 43 18 chr3 158193259 158193423 -59843735 + L1M4b LINE L1 784 951 -5908 1194 262 44 76 chr3 158193618 158194293 -59842865 + L1M4b LINE L1 2890 3521 -3436 * 1300 211 46 7 chr3 158194288 158194592 -59842566 + L1MD1 LINE L1 5927 6242 0 183 313 181 0 chr3 158195094 158195177 -59841981 + MIR SINE MIR 83 180 -82 336 358 23 29 chr3 158195318 158195491 -59841667 - MER5B DNA MER1_type 0 178 7 22 35 0 0 chr3 158195906 158195935 -59841223 + AT_rich Low_complexity Low_complexity 1 29 0 9062 201 35 48 chr3 158196038 158198390 -59838768 + Tigger5 DNA MER2_type 1 2323 0 348 176 0 0 chr3 158198746 158198814 -59838344 + CT-rich Low_complexity Low_complexity 3 70 0 198 208 0 0 chr3 158199281 158199329 -59837829 + (CA)n Simple_repeat Simple_repeat 1 48 0 1294 13 0 0 chr3 158199487 158199636 -59837522 - L1PA2 LINE L1 -1 6154 6006 218 69 0 0 chr3 158199642 158199671 -59837487 + (G)n Simple_repeat Simple_repeat 1 29 0 2022 210 55 20 chr3 158200547 158201005 -59836153 - MLT1D LTR MaLR -29 476 3 23 33 0 0 chr3 158201093 158201123 -59836035 + AT_rich Low_complexity Low_complexity 1 30 0 265 293 0 0 chr3 158202690 158202765 -59834393 + CT-rich Low_complexity Low_complexity 1 75 0 1381 277 62 58 chr3 158203290 158203914 -59833244 + L1MD2 LINE L1 5718 6344 -15 1976 116 7 3 chr3 158205359 158205673 -59831485 + AluSx SINE Alu 1 315 0 241 339 110 17 chr3 158206207 158206325 -59830833 + L2 LINE L2 3132 3260 -12 482 244 44 60 chr3 158206495 158206745 -59830413 + MER5C DNA MER1_type 73 318 -6 440 212 119 60 chr3 158207356 158207507 -59829651 - MER20 DNA MER1_type -7 212 53 283 103 0 103 chr3 158208184 158208252 -59828906 - L1MA3 LINE L1 0 6305 6245 3509 216 51 13 chr3 158209396 158210740 -59826418 - L1MA4A LINE L1 -26 6976 5530 3921 143 43 87 chr3 158210740 158211777 -59825381 - MER11C LTR ERVK 0 1071 1 9176 238 42 6 chr3 158211778 158214317 -59822841 - L1MA4A LINE L1 -1314 5534 2905 5216 223 40 4 chr3 158214361 158215565 -59821593 - L1MA4A LINE L1 -4473 2376 1130 1335 319 49 6 chr3 158215581 158216073 -59821085 - L1MA4A LINE L1 -6320 529 17 1953 126 4 0 chr3 158216140 158216437 -59820721 - AluSx SINE Alu 0 307 10 1094 259 12 0 chr3 158218813 158219084 -59818074 + AluJo SINE Alu 35 308 0 2140 222 71 7 chr3 158219271 158219852 -59817306 - L1MC3 LINE L1 0 7785 7168 1266 217 37 95 chr3 158219861 158220695 -59816463 + L1MCb LINE L1 762 1534 -4851 2108 183 47 14 chr3 158221335 158221716 -59815442 - L1MB3 LINE L1 0 6183 5781 222 37 0 0 chr3 158221716 158221743 -59815415 + (CA)n Simple_repeat Simple_repeat 2 28 0 2108 183 47 14 chr3 158221743 158221848 -59815310 - L1MB3 LINE L1 -402 5781 5681 210 37 0 0 chr3 158222903 158222930 -59814228 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 1706 286 83 23 chr3 158223060 158224177 -59812981 - L1ME2 LINE L1 -1 6163 4972 973 282 128 31 chr3 158224291 158225319 -59811839 - L1ME2 LINE L1 -1369 4777 3650 1518 210 3 7 chr3 158225460 158225760 -59811398 - AluJo SINE Alu -13 299 1 202 254 17 0 chr3 158225767 158225826 -59811332 + T-rich Low_complexity Low_complexity 2 61 0 747 313 101 27 chr3 158225875 158226392 -59810766 + MLT1H1 LTR MaLR 1 555 0 804 258 129 28 chr3 158227465 158227853 -59809305 + MER50 LTR ERV1 10 436 -298 3648 130 87 35 chr3 158227879 158229178 -59807980 + pTR5 LTR ERV1 743 2438 0 1015 165 17 70 chr3 158229216 158229446 -59807712 + MER50 LTR ERV1 517 734 0 301 357 92 18 chr3 158229460 158229687 -59807471 + MIR SINE MIR 19 262 0 1910 135 20 0 chr3 158230231 158230528 -59806630 - AluSg SINE Alu -7 303 1 28 0 0 0 chr3 158230719 158230747 -59806411 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 158231235 158231257 -59805901 + AT_rich Low_complexity Low_complexity 1 22 0 776 301 81 57 chr3 158231392 158231900 -59805258 + MLT1G1 LTR MaLR 73 592 -3 1739 171 3 13 chr3 158231980 158232278 -59804880 - AluSx SINE Alu -17 295 1 27 29 0 0 chr3 158234443 158234477 -59802681 + AT_rich Low_complexity Low_complexity 1 34 0 244 345 119 11 chr3 158235623 158235800 -59801358 - L3 LINE CR1 -5 1572 1377 227 310 26 83 chr3 158236080 158236309 -59800849 - L3 LINE CR1 -217 1360 1145 1029 259 75 15 chr3 158236310 158236868 -59800290 + LTR48B LTR ERV1 1 644 0 1948 160 42 18 chr3 158236870 158237287 -59799871 + LTR48B-int LTR ERV1 1 1329 -4617 2326 215 18 30 chr3 158237293 158237849 -59799309 + LTR48B-int LTR ERV1 361 1614 -4649 311 213 20 120 chr3 158237841 158237991 -59799167 + LTR49-int LTR ERV1 1479 1613 -3267 * 388 200 0 12 chr3 158237996 158238081 -59799077 + LTR49-int LTR ERV1 1299 1382 -4949 1263 170 25 46 chr3 158238208 158238490 -59798668 + LTR49-int LTR ERV1 1374 1649 -4682 836 120 0 0 chr3 158238490 158238607 -59798551 + AluSg/x SINE Alu 177 293 -17 1629 129 15 26 chr3 158238749 158239021 -59798137 - THE1B LTR MaLR -95 269 1 10662 127 2 5 chr3 158239021 158240606 -59796552 - THE1B-int LTR MaLR 0 1580 1 2059 144 33 25 chr3 158240606 158240967 -59796191 - THE1B LTR MaLR 0 364 1 314 269 11 32 chr3 158240967 158241060 -59796098 + MIR SINE MIR 162 252 -10 5214 270 83 10 chr3 158242533 158244334 -59792824 + L1M4b LINE L1 11 1953 -4902 305 271 14 0 chr3 158244334 158244404 -59792754 - MIR3 SINE MIR -32 176 106 196 371 9 0 chr3 158244753 158244858 -59792300 + L2 LINE L2 2959 3064 -208 22 80 0 0 chr3 158246570 158246620 -59790538 + AT_rich Low_complexity Low_complexity 1 50 0 856 224 49 4 chr3 158248051 158248296 -59788862 - MER63 DNA MER1_type 0 1062 807 1872 189 6 0 chr3 158248297 158248629 -59788529 + MER57A LTR ERV1 3 336 -67 1051 269 77 39 chr3 158248629 158249123 -59788035 - LTR10D LTR ERV1 0 513 1 8501 261 44 26 chr3 158249126 158251685 -59785473 - HERVI LTR ERV1 -1 7784 5180 831 185 0 0 chr3 158251676 158251822 -59785336 - HERVI LTR ERV1 -7024 761 616 * 289 241 25 0 chr3 158251822 158251901 -59785257 - HERVI LTR ERV1 -6333 316 236 1199 186 16 12 chr3 158252000 158252258 -59784900 - HERVI LTR ERV1 -7525 260 2 1046 255 26 39 chr3 158252258 158252643 -59784515 - LTR10B LTR ERV1 0 547 120 396 299 0 0 chr3 158252814 158252911 -59784247 - MER63 DNA MER1_type -250 810 714 449 260 48 0 chr3 158252912 158253016 -59784142 + MER63 DNA MER1_type 2 736 -100 249 314 0 0 chr3 158253023 158253093 -59784065 + MER63 DNA MER1_type 993 1062 0 255 261 43 0 chr3 158253398 158253467 -59783691 + MER58 DNA MER1_type 2349 2420 0 207 273 0 0 chr3 158254148 158254214 -59782944 + (TA)n Simple_repeat Simple_repeat 2 67 0 21 57 0 0 chr3 158255892 158255927 -59781231 + AT_rich Low_complexity Low_complexity 1 35 0 923 230 41 116 chr3 158258105 158258787 -59778371 + L1M4 LINE L1 4264 4894 -1252 637 151 44 0 chr3 158258845 158259004 -59778154 + GA-rich Low_complexity Low_complexity 1 166 0 9804 227 43 43 chr3 158259009 158260064 -59777094 - L1P4 LINE L1 -697 5468 4414 234 62 0 0 chr3 158260064 158260096 -59777062 + (TG)n Simple_repeat Simple_repeat 2 33 0 9804 227 43 43 chr3 158260096 158262119 -59775039 - L1P4 LINE L1 -1751 4414 2386 4382 115 1 6 chr3 158262233 158262931 -59774227 - L1P LINE L1 -2294 3852 3158 * 5376 101 4 4 chr3 158262930 158264332 -59772826 + L1PA6 LINE L1 4658 6060 -94 773 238 103 23 chr3 158264553 158264768 -59772390 - MER6 DNA MER2_type -70 795 -2 279 260 40 10 chr3 158264788 158264888 -59772270 + MER6 DNA MER2_type 760 862 -3 1314 266 33 31 chr3 158264889 158265368 -59771790 - L1M1 LINE L1 -4462 3103 2652 284 319 71 11 chr3 158265399 158265665 -59771493 - L1M4 LINE L1 -1898 4248 3967 22 0 0 0 chr3 158266587 158266609 -59770549 + AT_rich Low_complexity Low_complexity 1 22 0 842 117 32 19 chr3 158267346 158267500 -59769658 + L1P4 LINE L1 5313 5468 -697 715 138 44 0 chr3 158267505 158267664 -59769494 + CT-rich Low_complexity Low_complexity 1 166 0 844 238 40 117 chr3 158267722 158268398 -59768760 - L1M4 LINE L1 -1252 4894 4271 221 208 56 0 chr3 158269217 158269289 -59767869 + T-rich Low_complexity Low_complexity 2 77 0 2066 112 3 7 chr3 158270194 158270489 -59766669 + AluSg SINE Alu 1 294 -16 437 123 27 0 chr3 158270537 158270610 -59766548 + AluJ/FLAM SINE Alu 1 75 -237 3614 191 31 26 chr3 158271843 158272415 -59764743 + MER72 LTR ERV1 1 578 -144 2938 201 85 13 chr3 158272415 158273100 -59764058 - MER50 LTR ERV1 0 734 1 3614 191 31 26 chr3 158273100 158273246 -59763912 + MER72 LTR ERV1 578 722 0 303 194 16 0 chr3 158273320 158273382 -59763776 - MLT1K LTR MaLR -12 576 514 22 0 0 0 chr3 158274207 158274229 -59762929 + AT_rich Low_complexity Low_complexity 1 22 0 187 329 26 53 chr3 158274370 158274446 -59762712 - MIR SINE MIR -170 92 19 22 0 0 0 chr3 158274501 158274523 -59762635 + AT_rich Low_complexity Low_complexity 1 22 0 280 311 0 11 chr3 158275241 158275331 -59761827 - MIR SINE MIR -122 140 52 1956 138 0 3 chr3 158276660 158276965 -59760193 - AluSx SINE Alu -8 304 1 492 252 48 17 chr3 158277961 158278191 -59758967 + L1MC3 LINE L1 4326 4562 -1584 2305 154 16 70 chr3 158278194 158278635 -59758523 - MSTB LTR MaLR -9 417 1 20728 183 30 11 chr3 158278731 158284471 -59752687 + L1M1 LINE L1 16 5871 -1694 377 290 142 7 chr3 158284467 158284622 -59752536 + L1MC3 LINE L1 5560 5738 -431 * 504 303 49 46 chr3 158284796 158285146 -59752012 + L1MC3 LINE L1 6087 6437 -1348 425 276 21 21 chr3 158285158 158285303 -59751855 + MLT1F1 LTR MaLR 1 145 -422 980 212 43 0 chr3 158285307 158285719 -59751439 + L1MD3 LINE L1 7439 7987 -8 888 272 82 36 chr3 158285719 158286362 -59750796 + L1ME1 LINE L1 5263 5967 -199 1694 223 27 25 chr3 158287662 158288065 -59749093 - MER63B DNA MER1_type -1 435 32 279 273 27 0 chr3 158288170 158288280 -59748878 + (TA)n Simple_repeat Simple_repeat 1 113 0 255 309 11 11 chr3 158288393 158288487 -59748671 + GA-rich Low_complexity Low_complexity 1 94 0 1695 141 60 0 chr3 158289036 158289319 -59747839 + AluSx SINE Alu 1 300 -12 957 197 66 74 chr3 158289463 158289863 -59747295 - MSTB1 LTR MaLR 0 432 1 21 36 0 0 chr3 158290003 158290031 -59747127 + AT_rich Low_complexity Low_complexity 1 28 0 1141 255 37 0 chr3 158290301 158290677 -59746481 - MER114 LTR ERV -212 436 47 386 221 26 0 chr3 158290680 158290756 -59746402 + Tigger5 DNA MER2_type 1 78 -2245 302 178 68 55 chr3 158290756 158290829 -59746329 - Tigger5 DNA MER2_type -3 2320 2247 420 185 0 0 chr3 158290829 158290894 -59746264 + Tigger5 DNA MER2_type 2259 2323 0 30 27 0 0 chr3 158291049 158291086 -59746072 + AT_rich Low_complexity Low_complexity 1 37 0 1060 219 32 15 chr3 158291217 158291557 -59745601 - L1MC3 LINE L1 -251 7534 7039 30 27 0 0 chr3 158291597 158291634 -59745524 + AT_rich Low_complexity Low_complexity 1 37 0 657 271 0 0 chr3 158291703 158291847 -59745311 + FRAM SINE Alu 2 145 -31 1764 251 79 25 chr3 158291988 158292329 -59744829 - L1MC3 LINE L1 -831 6954 6574 276 111 0 0 chr3 158292329 158292374 -59744784 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 1764 251 79 25 chr3 158292374 158292550 -59744608 - L1MC3 LINE L1 -1211 6574 6409 279 273 91 0 chr3 158292544 158292654 -59744504 - L1MCa LINE L1 -6285 141 22 * 264 379 5 50 chr3 158292703 158292901 -59744257 + LTR16B LTR ERVL 28 216 -248 8223 186 57 39 chr3 158292919 158293845 -59743313 + L1MB3 LINE L1 19 927 -5457 1981 148 0 28 chr3 158293845 158294163 -59742995 + AluSx SINE Alu 1 309 -3 8223 186 57 39 chr3 158294163 158295186 -59741972 + L1MB3 LINE L1 927 2003 -4381 2489 214 28 37 chr3 158295189 158295237 -59741921 + L1MB3 LINE L1 4179 4226 -2156 1887 120 57 0 chr3 158295237 158295520 -59741638 + AluSx SINE Alu 1 299 -13 2489 214 28 37 chr3 158295520 158296176 -59740982 + L1MB3 LINE L1 4226 4877 -1505 727 181 28 51 chr3 158296320 158296497 -59740661 - MER2 DNA MER2_type -172 173 1 2578 196 19 42 chr3 158296511 158297130 -59740028 + L1MB3 LINE L1 5490 6094 -325 1341 116 58 6 chr3 158297132 158297675 -59739483 + L1MB3 LINE L1 6097 6905 0 335 330 62 16 chr3 158297922 158298116 -59739042 + LTR16B LTR ERVL 260 462 -2 25 0 0 0 chr3 158298381 158298406 -59738752 + AT_rich Low_complexity Low_complexity 1 25 0 1839 150 3 13 chr3 158298547 158298847 -59738311 - AluSx SINE Alu -15 297 1 219 36 0 0 chr3 158299594 158299622 -59737536 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 518 263 12 0 chr3 158299862 158300022 -59737136 + L1MA10 LINE L1 6169 6330 -4 3986 125 47 53 chr3 158300424 158301214 -59735944 + LTR1 LTR ERV1 1 785 0 24 85 0 0 chr3 158301556 158301615 -59735543 + AT_rich Low_complexity Low_complexity 1 59 0 604 337 92 31 chr3 158301726 158302180 -59734978 - L2 LINE L2 -618 2696 2215 296 359 35 7 chr3 158302226 158302371 -59734787 + MLT1I LTR MaLR 71 219 -190 246 62 0 0 chr3 158302452 158302484 -59734674 + (TA)n Simple_repeat Simple_repeat 1 32 0 2085 313 69 27 chr3 158302487 158303511 -59733647 - L2 LINE L2 -997 2317 1251 427 328 0 8 chr3 158303814 158303933 -59733225 - MLT1I LTR MaLR -189 220 103 763 353 116 29 chr3 158304246 158304770 -59732388 - L2 LINE L2 -2680 634 65 200 323 89 51 chr3 158304947 158305105 -59732053 - L2 LINE L2 -1183 2131 1968 180 0 0 0 chr3 158305128 158305148 -59732010 + (TG)n Simple_repeat Simple_repeat 2 21 0 230 116 23 0 chr3 158305275 158305318 -59731840 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 290 247 108 21 chr3 158305320 158305413 -59731745 - L2 LINE L2 -26 3287 3187 23 0 0 0 chr3 158305548 158305571 -59731587 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr3 158306371 158306401 -59730757 + AT_rich Low_complexity Low_complexity 1 30 0 5311 144 14 8 chr3 158307820 158308993 -59728165 + L1PA12 LINE L1 4963 6149 -19 869 164 24 0 chr3 158309200 158309365 -59727793 + L1MA3 LINE L1 6123 6291 -14 271 313 103 56 chr3 158309938 158310133 -59727025 + MIR SINE MIR 1 204 -58 249 302 0 3 chr3 158310833 158310979 -59726179 + MLT1G1 LTR MaLR 3 190 -405 321 262 131 48 chr3 158310981 158311149 -59726009 + MLT1G1 LTR MaLR 361 595 0 335 115 49 0 chr3 158311336 158311397 -59725761 - L1MB3 LINE L1 -10 6173 6110 1894 133 0 41 chr3 158311427 158311721 -59725437 - AluSx SINE Alu -28 284 3 850 228 26 0 chr3 158311722 158311911 -59725247 - L1MB5 LINE L1 -55 7538 7345 414 0 0 0 chr3 158312464 158312510 -59724648 + (TA)n Simple_repeat Simple_repeat 2 47 0 21 0 0 0 chr3 158312510 158312531 -59724627 + AT_rich Low_complexity Low_complexity 1 21 0 2049 101 33 23 chr3 158312556 158312862 -59724296 + AluSq SINE Alu 3 311 -2 1465 108 62 4 chr3 158312868 158313108 -59724050 + L1PB1 LINE L1 5894 6147 -4 27 49 0 0 chr3 158313312 158313353 -59723805 + AT_rich Low_complexity Low_complexity 1 41 0 183 205 0 0 chr3 158313620 158313659 -59723499 + (TA)n Simple_repeat Simple_repeat 2 40 0 453 302 57 12 chr3 158314187 158314367 -59722791 + MIR SINE MIR 14 190 -66 567 158 68 75 chr3 158314842 158314975 -59722183 - FLAM_A SINE Alu 0 133 2 205 221 65 13 chr3 158315033 158315110 -59722048 + MIR3 SINE MIR 121 201 -7 4184 204 45 19 chr3 158315260 158316273 -59720885 - L1MC2 LINE L1 -23 6321 5275 4993 174 28 2 chr3 158316334 158317752 -59719406 + L1PB2 LINE L1 4639 6094 -57 * 12388 208 40 29 chr3 158317750 158319554 -59717604 - L1MB5 LINE L1 -547 7172 5389 1632 185 3 7 chr3 158319554 158319856 -59717302 + AluSx SINE Alu 1 301 -11 12388 208 40 29 chr3 158319856 158320683 -59716475 - L1MB5 LINE L1 -2330 5389 4572 183 80 0 0 chr3 158320683 158320708 -59716450 + (TTA)n Simple_repeat Simple_repeat 3 27 0 1936 117 18 0 chr3 158320711 158320994 -59716164 - AluSc SINE Alu -21 288 1 12388 208 40 29 chr3 158320994 158321969 -59715189 - L1MB5 LINE L1 -3148 4571 3520 198 118 0 0 chr3 158321969 158322003 -59715155 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 12388 208 40 29 chr3 158322003 158322297 -59714861 - L1MB5 LINE L1 -4199 3520 3231 820 233 103 23 chr3 158322392 158322607 -59714551 - MER6 DNA MER2_type -70 795 -2 279 260 40 10 chr3 158322627 158322727 -59714431 + MER6 DNA MER2_type 760 862 -3 1516 252 29 27 chr3 158322728 158323207 -59713951 - L1MB5 LINE L1 -4462 3103 2652 1813 273 65 8 chr3 158323238 158323872 -59713286 - L1MCa LINE L1 -1898 4528 3859 1937 247 91 13 chr3 158323872 158324998 -59712160 - L1MCa LINE L1 -3354 3072 1859 181 0 0 65 chr3 158326185 158326216 -59710942 + (TAA)n Simple_repeat Simple_repeat 1 29 0 492 234 112 100 chr3 158326580 158326901 -59710257 - MLT1J1 LTR MaLR -14 432 108 22 0 0 0 chr3 158328251 158328273 -59708885 + AT_rich Low_complexity Low_complexity 1 22 0 485 219 133 13 chr3 158328286 158328437 -59708721 - MER69A DNA AcHobo -7 170 2 223 301 226 0 chr3 158328445 158328538 -59708620 - MIR SINE MIR -125 137 24 2343 73 0 19 chr3 158330404 158330719 -59706439 - AluY SINE Alu -2 309 1 204 40 0 0 chr3 158331146 158331171 -59705987 + (TTTTG)n Simple_repeat Simple_repeat 4 28 0 1836 175 25 57 chr3 158331632 158332071 -59705087 - L1MA9 LINE L1 -9 6303 5879 198 0 0 0 chr3 158332148 158332170 -59704988 + (T)n Simple_repeat Simple_repeat 1 22 0 407 289 66 26 chr3 158332170 158332489 -59704669 + L1ME3 LINE L1 5299 5624 -546 614 282 80 71 chr3 158332491 158333187 -59703971 - MER52A LTR ERV1 0 1755 581 1117 100 0 0 chr3 158333191 158333351 -59703807 + AluY SINE Alu 144 303 -8 241 176 176 0 chr3 158333355 158333406 -59703752 - MER52A LTR ERV1 -895 860 801 664 258 17 11 chr3 158333434 158333612 -59703546 - LTR28 LTR ERV1 -841 179 1 914 247 116 45 chr3 158333612 158334097 -59703061 + L1ME3 LINE L1 5623 6141 -21 241 113 0 65 chr3 158334212 158334274 -59702884 + (TA)n Simple_repeat Simple_repeat 1 58 0 180 0 0 0 chr3 158334338 158334358 -59702800 + (TA)n Simple_repeat Simple_repeat 2 21 0 24 77 0 0 chr3 158334548 158334600 -59702558 + AT_rich Low_complexity Low_complexity 1 52 0 221 208 56 0 chr3 158335235 158335307 -59701851 + A-rich Low_complexity Low_complexity 2 77 0 21 0 0 0 chr3 158335884 158335905 -59701253 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 158337069 158337091 -59700067 + AT_rich Low_complexity Low_complexity 1 22 0 212 294 37 0 chr3 158337476 158337585 -59699573 + (TA)n Simple_repeat Simple_repeat 2 114 0 296 283 9 9 chr3 158337812 158337925 -59699233 + HAL1b LINE L1 574 686 -662 24 67 0 0 chr3 158338948 158338993 -59698165 + AT_rich Low_complexity Low_complexity 1 45 0 261 333 175 22 chr3 158340386 158340569 -59696589 - MIR SINE MIR -46 216 6 2055 103 3 7 chr3 158342263 158342553 -59694605 + AluSg SINE Alu 1 289 -21 650 257 45 0 chr3 158342741 158342920 -59694238 - MER58A DNA MER1_type -1 223 37 244 271 79 21 chr3 158343450 158343590 -59693568 - L1MEc LINE L1 -6194 202 55 19758 161 79 116 chr3 158344411 158348191 -59688967 + L1M1 LINE L1 14 3930 -3635 2116 105 44 0 chr3 158348191 158348487 -59688671 + AluSc SINE Alu 1 309 0 19758 161 79 116 chr3 158348487 158348922 -59688236 + L1M1 LINE L1 3930 4379 -3186 827 101 0 42 chr3 158348922 158349041 -59688117 + AluSg/x SINE Alu 170 283 -27 19758 161 79 116 chr3 158349041 158351157 -59686001 + L1M1 LINE L1 4379 6232 -1333 22 70 0 0 chr3 158352882 158352925 -59684233 + AT_rich Low_complexity Low_complexity 1 43 0 21 57 0 0 chr3 158352989 158353024 -59684134 + AT_rich Low_complexity Low_complexity 1 35 0 925 299 99 48 chr3 158353878 158354313 -59682845 - MLT1G LTR MaLR -2 588 132 189 366 32 21 chr3 158354429 158354522 -59682636 - L2 LINE L2 -7 3265 3172 201 39 0 0 chr3 158354542 158354568 -59682590 + (TG)n Simple_repeat Simple_repeat 1 26 0 780 304 3 21 chr3 158354684 158355072 -59682086 - MLT1B LTR MaLR -2 388 17 252 0 0 0 chr3 158356563 158356591 -59680567 + (CA)n Simple_repeat Simple_repeat 2 29 0 2250 91 3 3 chr3 158357077 158357375 -59679783 - AluY SINE Alu -10 301 4 351 0 0 0 chr3 158357623 158357662 -59679496 + (CA)n Simple_repeat Simple_repeat 2 40 0 351 0 0 0 chr3 158357802 158357841 -59679317 + (TG)n Simple_repeat Simple_repeat 2 40 0 23 0 0 0 chr3 158358089 158358112 -59679046 + AT_rich Low_complexity Low_complexity 1 23 0 770 227 7 7 chr3 158358184 158358338 -59678820 - FRAM SINE Alu -12 154 1 32 43 0 0 chr3 158358345 158358391 -59678767 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr3 158358668 158358689 -59678469 + AT_rich Low_complexity Low_complexity 1 21 0 367 387 21 16 chr3 158359551 158359742 -59677416 - MER91A DNA MER1_type -1 195 4 976 232 11 0 chr3 158360143 158360328 -59676830 + MER5A DNA MER1_type 2 188 -1 21 36 0 0 chr3 158360568 158360596 -59676562 + AT_rich Low_complexity Low_complexity 1 28 0 233 306 76 11 chr3 158360760 158360877 -59676281 + MIR SINE MIR 36 160 -63 387 203 203 0 chr3 158362369 158362502 -59674656 + LTR50 LTR ERVL 611 770 -25 2227 110 0 0 chr3 158362588 158362887 -59674271 - AluSx SINE Alu -13 299 1 187 359 19 29 chr3 158363278 158363381 -59673777 - MIR SINE MIR -113 149 48 432 310 109 17 chr3 158363659 158363898 -59673260 + MIR SINE MIR 2 262 0 294 354 0 0 chr3 158364099 158364195 -59672963 - MIR SINE MIR -108 154 59 29 21 0 21 chr3 158364872 158364903 -59672255 + AT_rich Low_complexity Low_complexity 1 32 -14 25952 26 0 1 chr3 158364903 158368784 -59668374 - L1PA3 LINE L1 -3 6152 2274 29 21 0 21 chr3 158368784 158368799 -59668359 + AT_rich Low_complexity Low_complexity 32 46 0 2099 122 0 20 chr3 158368994 158369297 -59667861 - AluSx SINE Alu -13 299 3 374 293 69 82 chr3 158369380 158369544 -59667614 - HAL1b LINE L1 -815 533 368 1286 114 106 4 chr3 158369544 158369790 -59667368 + L1MA3 LINE L1 6035 6305 0 374 293 69 82 chr3 158369790 158370014 -59667144 - HAL1b LINE L1 -980 368 150 5640 98 52 8 chr3 158370022 158371627 -59665531 + L1PA12 LINE L1 4523 6168 0 370 356 68 0 chr3 158372385 158372548 -59664610 - MIR SINE MIR -53 209 36 25 0 0 0 chr3 158373027 158373052 -59664106 + AT_rich Low_complexity Low_complexity 1 25 0 544 339 114 39 chr3 158374154 158374876 -59662282 - L2 LINE L2 -574 2740 1965 1003 129 10 27 chr3 158375161 158375348 -59661810 - L1PB1 LINE L1 -526 5625 5459 2708 93 8 20 chr3 158375348 158375746 -59661412 + L1PB1 LINE L1 5626 6018 -133 598 248 111 56 chr3 158375759 158376292 -59660866 + L1 LINE L1 3676 4237 -1909 * 954 273 146 14 chr3 158376287 158376731 -59660427 + L1ME3A LINE L1 5663 6165 -5 325 336 43 19 chr3 158376918 158377129 -59660029 + L1 LINE L1 4215 4430 -1716 873 136 0 0 chr3 158378399 158378524 -59658634 + AluSg/x SINE Alu 168 292 -20 23 68 0 0 chr3 158378551 158378595 -59658563 + AT_rich Low_complexity Low_complexity 1 44 0 239 323 31 69 chr3 158379755 158379885 -59657273 - MER5A DNA MER1_type -13 176 52 2406 80 0 3 chr3 158379887 158380188 -59656970 + AluY SINE Alu 1 300 -11 1016 166 47 5 chr3 158380888 158381081 -59656077 + L1MC1 LINE L1 6133 6333 0 2225 95 10 3 chr3 158381106 158381401 -59655757 + AluSg SINE Alu 1 297 -13 22 0 0 0 chr3 158381461 158381483 -59655675 + AT_rich Low_complexity Low_complexity 1 22 0 199 283 0 0 chr3 158381671 158381724 -59655434 + L2 LINE L2 350 402 -2912 27 0 0 0 chr3 158382461 158382488 -59654670 + AT_rich Low_complexity Low_complexity 1 27 0 6709 104 13 15 chr3 158382797 158383857 -59653301 - L1P LINE L1 -2854 3292 2235 * 9894 96 14 9 chr3 158383851 158385346 -59651812 - L1PA7 LINE L1 -1486 4660 3159 6806 72 0 1 chr3 158385346 158386838 -59650320 + L1PA7 LINE L1 4658 6151 -3 885 250 8 47 chr3 158386838 158387094 -59650064 + L1ME2 LINE L1 5885 6130 -34 21 57 0 0 chr3 158387233 158387268 -59649890 + AT_rich Low_complexity Low_complexity 1 35 0 4440 19 0 0 chr3 158387604 158388083 -59649075 - SVA Other Other 0 1386 908 2553 83 100 5 chr3 158388811 158389220 -59647938 - LTR7 LTR ERV1 -2 448 1 2342 108 48 11 chr3 158389220 158389598 -59647560 - HERVH LTR ERV1 0 7713 7322 1336 143 19 0 chr3 158389596 158389812 -59647346 - HERVH LTR ERV1 -1894 5819 5600 * 4174 143 5 5 chr3 158389816 158390475 -59646683 - HERVH LTR ERV1 -2567 5146 4488 3362 103 16 6 chr3 158390477 158390974 -59646184 - HERVH LTR ERV1 -3720 3993 3492 883 142 20 0 chr3 158390964 158391112 -59646046 - HERVH LTR ERV1 -4423 3290 3140 * 8449 156 10 8 chr3 158391106 158392565 -59644593 - HERVH LTR ERV1 -4726 2987 1527 237 303 50 82 chr3 158393134 158393415 -59643743 + HAL1 LINE L1 47 318 -2189 1078 173 0 0 chr3 158393436 158393604 -59643554 + AluSg/x SINE Alu 137 304 -8 381 183 135 32 chr3 158393604 158393730 -59643428 + MER53 DNA DNA 32 170 -19 309 211 81 49 chr3 158393635 158393758 -59643400 - MER53 DNA DNA -61 128 2 * 752 289 72 94 chr3 158393800 158395184 -59641974 + HAL1 LINE L1 340 1693 -814 24 0 0 0 chr3 158395403 158395427 -59641731 + AT_rich Low_complexity Low_complexity 1 24 0 456 138 50 0 chr3 158396711 158396791 -59640367 + MSTA LTR MaLR 343 426 -2 463 246 50 18 chr3 158396797 158397017 -59640141 - L1M4 LINE L1 -1594 4552 4326 2309 87 3 10 chr3 158398012 158398321 -59638837 + AluY SINE Alu 1 307 -4 4825 135 10 8 chr3 158398322 158399090 -59638068 + L1PB3 LINE L1 5370 6139 -15 719 191 118 18 chr3 158399124 158399344 -59637814 + L1 LINE L1 4235 4476 -1670 22 80 0 0 chr3 158400432 158400482 -59636676 + AT_rich Low_complexity Low_complexity 1 50 0 2712 12 0 28 chr3 158400725 158401045 -59636113 - AluYa5 SINE Alu 0 311 1 7194 120 0 2 chr3 158401875 158402096 -59635062 + L1PA7 LINE L1 4155 4375 -1779 234 62 0 0 chr3 158402096 158402128 -59635030 + (CA)n Simple_repeat Simple_repeat 2 33 0 7194 120 0 2 chr3 158402128 158403866 -59633292 + L1PA7 LINE L1 4375 6151 -3 885 250 8 47 chr3 158403866 158404122 -59633036 + L1ME2 LINE L1 5885 6130 -34 448 356 13 0 chr3 158404264 158404489 -59632669 - L1M3a LINE L1 -5727 228 1 230 322 153 15 chr3 158404699 158404901 -59632257 + MIR SINE MIR 20 249 -13 201 39 0 0 chr3 158405115 158405141 -59632017 + (CA)n Simple_repeat Simple_repeat 1 26 0 273 232 72 0 chr3 158405151 158405220 -59631938 - MER33 DNA MER1_type -242 82 9 361 360 122 17 chr3 158405324 158405668 -59631490 + L2 LINE L2 1281 1660 -1654 6191 152 6 21 chr3 158406207 158407294 -59629864 - THE1B-int LTR MaLR -510 1070 1 2000 149 33 28 chr3 158407294 158407656 -59629502 - THE1B LTR MaLR 0 364 1 277 266 11 43 chr3 158407656 158407750 -59629408 + MIR SINE MIR 162 252 -10 21 36 0 0 chr3 158407764 158407792 -59629366 + AT_rich Low_complexity Low_complexity 1 28 0 11545 58 0 3 chr3 158408107 158409601 -59627557 - L1P LINE L1 -1695 4451 2962 328 313 0 0 chr3 158409695 158409823 -59627335 + C-rich Low_complexity Low_complexity 1 128 0 1055 203 19 96 chr3 158410277 158410641 -59626517 + L1 LINE L1 3888 4223 -1923 4325 208 18 6 chr3 158410642 158411821 -59625337 + L1PA15-16 LINE L1 2678 3866 -2983 286 324 0 0 chr3 158411975 158412086 -59625072 + G-rich Low_complexity Low_complexity 1 111 0 1111 92 93 17 chr3 158413002 158413237 -59623921 - THE1C LTR MaLR 0 375 87 5242 204 22 23 chr3 158413795 158414909 -59622249 + L1M1 LINE L1 317 1429 -6136 497 344 113 42 chr3 158415180 158415924 -59621234 - L2 LINE L2 -553 2761 1965 1771 167 0 22 chr3 158418557 158418869 -59618289 + AluJb SINE Alu 5 309 -3 2276 110 0 0 chr3 158419598 158419897 -59617261 + AluSg SINE Alu 1 299 -11 1796 276 40 5 chr3 158420116 158420689 -59616469 - L1MC3 LINE L1 -710 7075 6483 34 0 0 0 chr3 158421611 158421645 -59615513 + AT_rich Low_complexity Low_complexity 1 34 0 3732 276 48 17 chr3 158421959 158423176 -59613982 - Charlie1 DNA MER1_type -947 1814 560 191 357 54 23 chr3 158423221 158423350 -59613808 + L2 LINE L2 2000 2132 -1182 1347 196 128 148 chr3 158423451 158424364 -59612794 + LTR28 LTR ERV1 5 1020 0 26 0 0 0 chr3 158424482 158424508 -59612650 + AT_rich Low_complexity Low_complexity 1 26 0 361 315 10 1 chr3 158424767 158424885 -59612273 + MLT1G LTR MaLR 3 124 -438 747 256 11 0 chr3 158425067 158425243 -59611915 + MLT1H1 LTR MaLR 378 555 0 22 56 0 0 chr3 158425556 158425592 -59611566 + AT_rich Low_complexity Low_complexity 1 36 0 216 0 0 0 chr3 158425686 158425710 -59611448 + (CA)n Simple_repeat Simple_repeat 1 24 0 1768 274 34 19 chr3 158426852 158427384 -59609774 + MLT1F LTR MaLR 1 540 -2 7540 29 0 1 chr3 158427384 158428516 -59608642 + L1PA4 LINE L1 5024 6152 -3 446 290 160 25 chr3 158428572 158428772 -59608386 + MIR SINE MIR 18 244 -18 25 51 0 0 chr3 158429780 158429819 -59607339 + AT_rich Low_complexity Low_complexity 1 39 0 204 158 0 0 chr3 158430324 158430362 -59606796 + (TA)n Simple_repeat Simple_repeat 1 38 0 22 0 0 0 chr3 158430486 158430508 -59606650 + AT_rich Low_complexity Low_complexity 1 22 0 233 227 23 0 chr3 158430773 158430861 -59606297 + GA-rich Low_complexity Low_complexity 4 93 0 25 0 0 0 chr3 158431046 158431071 -59606087 + AT_rich Low_complexity Low_complexity 1 25 0 324 0 0 0 chr3 158431689 158431725 -59605433 + (CA)n Simple_repeat Simple_repeat 2 37 0 201 115 39 19 chr3 158432047 158432099 -59605059 + (TATATG)n Simple_repeat Simple_repeat 4 56 0 225 65 0 0 chr3 158433216 158433247 -59603911 + (TG)n Simple_repeat Simple_repeat 2 32 0 181 294 20 0 chr3 158433345 158433396 -59603762 + L2 LINE L2 3261 3312 -1 22 56 0 0 chr3 158433661 158433697 -59603461 + AT_rich Low_complexity Low_complexity 1 36 0 1130 217 122 6 chr3 158433911 158434238 -59602920 + L1ME1 LINE L1 5654 6018 -148 870 230 10 34 chr3 158434621 158434830 -59602328 + Charlie1 DNA MER1_type 24 227 -2534 233 281 78 96 chr3 158435541 158435876 -59601282 + HAL1 LINE L1 1028 1356 -1151 197 111 0 0 chr3 158436252 158436279 -59600879 + MIR SINE MIR 119 145 -63 359 268 106 14 chr3 158436661 158436803 -59600355 - MLT1I LTR MaLR -2 407 253 226 250 0 0 chr3 158438236 158438294 -59598864 + (TG)n Simple_repeat Simple_repeat 1 58 -363 1559 84 196 66 chr3 158438294 158438626 -59598532 - THE1C LTR MaLR 0 375 1 226 250 0 0 chr3 158438626 158438657 -59598501 + (TG)n Simple_repeat Simple_repeat 57 421 0 315 267 215 15 chr3 158439071 158439206 -59597952 + L2 LINE L2 3095 3256 -57 226 211 0 0 chr3 158439834 158439872 -59597286 - MLT1J1 LTR MaLR -123 323 286 294 268 31 0 chr3 158439954 158440051 -59597107 - MLT1J2 LTR MaLR -282 168 69 434 18 18 0 chr3 158440317 158440372 -59596786 + (CA)n Simple_repeat Simple_repeat 1 56 0 980 207 80 70 chr3 158440590 158440976 -59596182 + MLT1B LTR MaLR 1 390 0 34 0 0 0 chr3 158441220 158441254 -59595904 + AT_rich Low_complexity Low_complexity 1 34 0 294 267 61 61 chr3 158441902 158442033 -59595125 - MLT1I LTR MaLR -2 407 277 276 251 44 6 chr3 158442024 158442113 -59595045 + MLT1H LTR MaLR 6 130 -419 * 1925 124 7 14 chr3 158442711 158443001 -59594157 + AluSq SINE Alu 3 290 -23 359 327 96 20 chr3 158443136 158443496 -59593662 + LTR33 LTR ERVL 49 451 -70 21 36 0 0 chr3 158444579 158444607 -59592551 + AT_rich Low_complexity Low_complexity 1 28 0 1743 303 79 11 chr3 158444658 158445457 -59591701 + L2 LINE L2 2201 3121 -192 198 255 39 0 chr3 158445506 158445557 -59591601 + L2 LINE L2 3261 3313 0 308 287 9 0 chr3 158445859 158445967 -59591191 - L1MEc LINE L1 -4109 2287 2179 23 33 0 0 chr3 158446587 158446617 -59590541 + AT_rich Low_complexity Low_complexity 1 30 0 1767 211 102 22 chr3 158446974 158447590 -59589568 - MER39 LTR ERV1 -5 702 2 1006 223 144 52 chr3 158447596 158448041 -59589117 + MER34C LTR ERV1 11 496 -89 10569 109 10 3 chr3 158448041 158449533 -59587625 + HERVL LTR ERVL 858 2359 -3295 7801 96 7 1 chr3 158449655 158450803 -59586355 + HERVL LTR ERVL 1406 2615 -3039 2214 124 0 28 chr3 158450812 158451168 -59585990 + HERVL LTR ERVL 3011 3356 -2298 1022 158 31 13 chr3 158451168 158451371 -59585787 + THE1B LTR MaLR 1 208 -167 682 96 0 0 chr3 158451345 158451439 -59585719 - MLT2A2 LTR ERVL -357 96 3 * 4419 88 2 3 chr3 158451441 158452043 -59585115 - HERVL-A2 LTR ERVL 0 5654 5054 306 0 0 0 chr3 158452484 158452518 -59584640 + (CA)n Simple_repeat Simple_repeat 1 34 0 22 35 0 0 chr3 158453792 158453821 -59583337 + AT_rich Low_complexity Low_complexity 1 29 0 2118 118 7 3 chr3 158454487 158454783 -59582375 - AluSx SINE Alu -13 299 3 3161 151 44 20 chr3 158454823 158455411 -59581747 - MER4B LTR ERV1 -8 602 1 4185 175 34 140 chr3 158455453 158456809 -59580349 - MER52A LTR ERV1 0 1755 475 421 275 135 13 chr3 158457733 158457962 -59579196 - L1M4 LINE L1 -1747 4399 4143 649 182 16 0 chr3 158457975 158458096 -59579062 - FLAM_C SINE Alu -16 127 5 2659 271 144 16 chr3 158458102 158459867 -59577291 - L1M4 LINE L1 -1993 4153 2164 * 8898 182 21 9 chr3 158459866 158461118 -59576040 + L1MA3 LINE L1 3455 4691 -1614 1367 216 24 3 chr3 158461118 158461409 -59575749 + AluJo SINE Alu 1 297 -15 201 74 0 0 chr3 158461409 158461436 -59575722 + (TA)n Simple_repeat Simple_repeat 2 28 0 8898 182 21 9 chr3 158461436 158462994 -59574164 + L1MA3 LINE L1 4690 6302 -3 294 315 71 22 chr3 158463665 158464394 -59572764 + L1MDa LINE L1 2449 3212 -3328 31 68 0 0 chr3 158464404 158464463 -59572695 + AT_rich Low_complexity Low_complexity 1 59 0 23 92 0 0 chr3 158464760 158464825 -59572333 + AT_rich Low_complexity Low_complexity 1 65 0 27 29 0 0 chr3 158466229 158466263 -59570895 + AT_rich Low_complexity Low_complexity 1 34 0 600 194 123 29 chr3 158466448 158466618 -59570540 - L1PA16 LINE L1 -9 6157 5972 1145 228 15 5 chr3 158466618 158466877 -59570281 - L1PA16 LINE L1 -81 6085 5813 279 79 0 0 chr3 158467164 158467202 -59569956 + (CA)n Simple_repeat Simple_repeat 1 38 0 181 219 73 49 chr3 158468205 158468287 -59568871 - L2 LINE L2 -98 3215 3132 259 356 74 48 chr3 158468377 158468756 -59568402 + L2 LINE L2 2587 2975 -339 1346 289 40 21 chr3 158470784 158471254 -59565904 - MLT1D LTR MaLR -24 481 3 185 0 40 0 chr3 158471775 158471800 -59565358 + (TAAAAA)n Simple_repeat Simple_repeat 3 28 0 325 280 78 21 chr3 158471980 158472223 -59564935 - L1M4 LINE L1 -900 6665 6409 23 33 0 0 chr3 158472319 158472349 -59564809 + AT_rich Low_complexity Low_complexity 1 30 0 1484 167 46 15 chr3 158472359 158472622 -59564536 - AluSg SINE Alu -13 297 27 1618 184 0 26 chr3 158472652 158472957 -59564201 - AluSg SINE Alu -12 298 2 880 219 25 0 chr3 158473130 158473326 -59563832 + Tigger1 DNA MER2_type 1 201 -2217 636 252 40 0 chr3 158473379 158473530 -59563628 + Tigger1 DNA MER2_type 187 343 -2075 346 224 0 0 chr3 158473542 158473618 -59563540 - L1M4 LINE L1 -1265 6300 6225 2488 158 55 20 chr3 158473718 158474264 -59562894 - L1M4 LINE L1 -1347 6218 5654 13120 194 29 16 chr3 158474298 158475066 -59562092 - L1PB3 LINE L1 -15 6855 6098 2307 76 3 22 chr3 158475066 158475380 -59561778 - AluY SINE Alu -3 308 1 13120 194 29 16 chr3 158475380 158476928 -59560230 - L1PB3 LINE L1 -772 6098 4571 2129 159 45 29 chr3 158476928 158477349 -59559809 + MSTA LTR MaLR 1 428 0 13120 194 29 16 chr3 158477349 158479186 -59557972 - L1PB3 LINE L1 -2299 4571 2632 1459 184 13 91 chr3 158479188 158479585 -59557573 - L1M4 LINE L1 -1923 5642 5277 3497 85 12 2 chr3 158479585 158480065 -59557093 - LTR15 LTR ERV1 -8 485 1 6426 237 67 12 chr3 158480067 158482461 -59554697 - L1M4 LINE L1 -2281 5284 2750 3062 137 28 18 chr3 158482464 158482807 -59554351 - MER84 LTR ERVI -4 503 152 2544 53 0 3 chr3 158482807 158483109 -59554049 + AluY SINE Alu 3 303 -8 3062 137 28 18 chr3 158483109 158483263 -59553895 - MER84 LTR ERVI -355 152 1 1960 253 66 1 chr3 158483271 158483968 -59553190 - L1M4 LINE L1 -4815 2750 2009 2649 68 100 5 chr3 158484523 158484932 -59552226 - LTR7 LTR ERV1 -2 448 1 2185 106 76 11 chr3 158484932 158485300 -59551858 - HERVH LTR ERV1 0 7713 7322 1379 134 19 0 chr3 158485298 158485514 -59551644 - HERVH LTR ERV1 -1894 5819 5600 * 4378 140 1 1 chr3 158485518 158486177 -59550981 - HERVH LTR ERV1 -2567 5146 4488 3321 105 16 6 chr3 158486179 158486676 -59550482 - HERVH LTR ERV1 -3720 3993 3492 * 19238 115 62 13 chr3 158486666 158489805 -59547353 - HERVH LTR ERV1 -4423 3290 1 2550 90 98 5 chr3 158489807 158490217 -59546941 - LTR7 LTR ERV1 -2 448 1 10725 241 47 46 chr3 158491108 158491969 -59545189 - L1MA9 LINE L1 -1 6199 5340 2157 95 3 16 chr3 158491969 158492273 -59544885 - AluSg SINE Alu -10 300 1 10725 241 47 46 chr3 158492273 158493463 -59543695 - L1MA9 LINE L1 -860 5340 4153 2047 97 12 56 chr3 158493463 158493783 -59543375 - AluY SINE Alu -5 306 1 10725 241 47 46 chr3 158493783 158498484 -59538674 - L1MA9 LINE L1 -2047 4153 1 234 314 162 16 chr3 158498705 158498896 -59538262 + MIR SINE MIR 31 249 -13 201 39 0 0 chr3 158499110 158499136 -59538022 + (CA)n Simple_repeat Simple_repeat 1 26 0 266 225 50 0 chr3 158499146 158499229 -59537929 - MER33 DNA MER1_type -261 63 1 377 358 122 17 chr3 158499319 158499663 -59537495 + L2 LINE L2 1281 1660 -1654 304 275 30 92 chr3 158499640 158499771 -59537387 + L2 LINE L2 3169 3291 -22 * 345 24 0 0 chr3 158499985 158500027 -59537131 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 323 299 71 46 chr3 158500272 158500469 -59536689 + MIR SINE MIR 5 206 -56 1447 138 46 0 chr3 158500488 158500727 -59536431 - MER47A DNA MER2_type -78 288 39 28 48 0 0 chr3 158500935 158500977 -59536181 + AT_rich Low_complexity Low_complexity 1 42 0 21 71 0 0 chr3 158501412 158501454 -59535704 + AT_rich Low_complexity Low_complexity 1 42 0 348 317 46 68 chr3 158502100 158502425 -59534733 + HAL1 LINE L1 1 318 -2189 1052 174 0 0 chr3 158502446 158502613 -59534545 + AluSg/x SINE Alu 137 303 -9 390 183 135 32 chr3 158502613 158502739 -59534419 + MER53 DNA DNA 32 170 -19 320 211 81 49 chr3 158502644 158502767 -59534391 - MER53 DNA DNA -61 128 2 * 885 287 72 94 chr3 158502809 158504194 -59532964 + HAL1 LINE L1 340 1693 -814 24 0 0 0 chr3 158504413 158504437 -59532721 + AT_rich Low_complexity Low_complexity 1 24 0 419 267 12 79 chr3 158505710 158505875 -59531283 - L2 LINE L2 -4 3309 3156 3744 185 29 6 chr3 158505898 158506589 -59530569 - MER50 LTR ERV1 -11 723 17 14674 146 25 16 chr3 158506601 158509033 -59528125 - MER50-int LTR ERV1 0 7205 4752 893 122 28 33 chr3 158509033 158509123 -59528035 - MER83B-int LTR ERV1 -2444 3502 3413 7469 25 7 8 chr3 158509123 158510297 -59526861 + L1PA5 LINE L1 4977 6148 -6 893 122 28 33 chr3 158510297 158510386 -59526772 - MER83B-int LTR ERV1 -2533 3413 3324 866 149 26 22 chr3 158510387 158510599 -59526559 - MER83B-int LTR ERV1 -998 3882 3550 370 123 231 0 chr3 158510596 158510661 -59526497 - MER83B-int LTR ERV1 -3393 1487 1408 * 914 195 36 5 chr3 158510655 158510849 -59526309 - MER83B-int LTR ERV1 -3713 2984 1003 * 6578 157 22 17 chr3 158510845 158512606 -59524552 - MER83B-int LTR ERV1 -5356 1849 1 2920 158 47 2 chr3 158512636 158513143 -59524015 - MER50 LTR ERV1 -204 530 1 300 369 39 26 chr3 158513557 158513731 -59523427 + MER5A DNA MER1_type 2 188 -1 234 228 123 0 chr3 158513884 158513941 -59523217 + MER69 DNA AcHobo 12 75 -2451 204 294 15 29 chr3 158514792 158514860 -59522298 + L2 LINE L2 3247 3313 0 974 307 112 5 chr3 158515834 158516461 -59520697 + L1ME3A LINE L1 5294 5975 -189 1765 242 49 20 chr3 158517357 158517951 -59519207 - L1M4 LINE L1 -1949 4197 3587 21 36 0 0 chr3 158518539 158518567 -59518591 + AT_rich Low_complexity Low_complexity 1 28 0 3547 231 45 18 chr3 158519623 158520499 -59516659 + L1MA4 LINE L1 16 914 -6651 * 9229 199 29 19 chr3 158520497 158525159 -59511999 + L1MA4 LINE L1 3001 7714 -5 247 310 78 35 chr3 158526462 158526604 -59510554 - MIR SINE MIR -31 231 84 22 88 0 0 chr3 158527008 158527065 -59510093 + AT_rich Low_complexity Low_complexity 1 57 0 24 53 0 0 chr3 158527099 158527137 -59510021 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr3 158527237 158527261 -59509897 + AT_rich Low_complexity Low_complexity 1 24 0 899 227 36 9 chr3 158527361 158527581 -59509577 + L1MCa LINE L1 34 259 -6167 * 2727 191 49 11 chr3 158527579 158528237 -59508921 + L1MCa LINE L1 790 1472 -4954 * 4628 259 74 14 chr3 158528226 158530133 -59507025 + L1MCa LINE L1 2268 4325 -2101 1114 246 86 70 chr3 158530132 158530317 -59506841 - L1M1 LINE L1 -3932 3633 3452 * 213 39 0 0 chr3 158530317 158530343 -59506815 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1114 246 86 70 chr3 158530343 158530382 -59506776 - L1M1 LINE L1 -4113 3452 3415 2323 125 3 3 chr3 158530382 158530742 -59506416 - L1PA14 LINE L1 -7 6154 5795 1114 246 86 70 chr3 158530742 158531260 -59505898 - L1M1 LINE L1 -4150 3415 2878 21 71 0 0 chr3 158531921 158531963 -59505195 + AT_rich Low_complexity Low_complexity 1 42 0 2108 137 0 0 chr3 158532482 158532774 -59504384 - AluSx SINE Alu -20 292 1 189 379 90 9 chr3 158532812 158533023 -59504135 + L2 LINE L2 659 886 -2428 402 147 0 0 chr3 158533294 158533362 -59503796 + (GGAGAA)n Simple_repeat Simple_repeat 3 70 0 407 298 173 44 chr3 158533416 158533826 -59503332 + L2 LINE L2 1296 1758 -1556 232 308 121 27 chr3 158534120 158534344 -59502814 - L1ME LINE L1 -202 5919 5675 817 242 69 104 chr3 158534454 158534904 -59502254 + MLT1C LTR MaLR 1 434 -33 2174 124 0 3 chr3 158534905 158535219 -59501939 - AluSq SINE Alu 0 313 1 468 290 91 0 chr3 158535403 158535589 -59501569 - L1MC4 LINE L1 -31 8011 7809 329 227 0 49 chr3 158535582 158535705 -59501453 - L1MC4 LINE L1 -328 7667 7477 * 259 195 18 0 chr3 158536271 158536384 -59500774 + (TA)n Simple_repeat Simple_repeat 2 116 0 271 327 47 59 chr3 158536545 158536821 -59500337 + L2 LINE L2 2794 3076 -237 195 42 0 0 chr3 158536824 158536848 -59500310 + (CA)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr3 158538008 158538032 -59499126 + AT_rich Low_complexity Low_complexity 1 24 0 6777 183 26 15 chr3 158538684 158539783 -59497375 - L1 LINE L1 -1252 6313 5193 1198 219 67 21 chr3 158539783 158540066 -59497092 - AluJo SINE Alu -6 296 1 6777 183 26 15 chr3 158540066 158540416 -59496742 - L1 LINE L1 -2372 5193 4848 5205 206 15 7 chr3 158540403 158541980 -59495178 + L1PA15 LINE L1 4574 6165 0 * 3373 250 38 23 chr3 158542003 158542387 -59494771 - L1 LINE L1 -3158 4407 4030 216 0 0 0 chr3 158542387 158542411 -59494747 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3373 250 38 23 chr3 158542411 158543552 -59493606 - L1 LINE L1 -3535 4030 2907 306 73 0 0 chr3 158543552 158543593 -59493565 + (TG)n Simple_repeat Simple_repeat 1 41 0 3373 250 38 23 chr3 158543593 158543762 -59493396 - L1 LINE L1 -4658 2907 2742 744 254 49 5 chr3 158543762 158543986 -59493172 + MER46A DNA MER2_type 3 236 0 3373 250 38 23 chr3 158543986 158544410 -59492748 - L1 LINE L1 -4823 2742 2262 234 149 106 0 chr3 158544410 158544457 -59492701 - L1 LINE L1 -5135 2354 2303 2036 237 21 64 chr3 158544511 158545093 -59492065 - L1 LINE L1 -6462 1027 471 22 56 0 0 chr3 158545453 158545489 -59491669 + AT_rich Low_complexity Low_complexity 1 36 0 3300 108 2 0 chr3 158546041 158546493 -59490665 + MLT2A2 LTR ERVL 1 453 0 29 90 0 0 chr3 158546672 158546750 -59490408 + AT_rich Low_complexity Low_complexity 1 78 0 6913 123 19 3 chr3 158546854 158548709 -59488449 - L1PA8A LINE L1 -4 6442 4560 7793 172 9 21 chr3 158548709 158549963 -59487195 - L1PA8A LINE L1 -3931 2530 1254 216 67 0 0 chr3 158549963 158549993 -59487165 + (TTG)n Simple_repeat Simple_repeat 1 30 0 7793 172 9 21 chr3 158549993 158551230 -59485928 - L1PA8A LINE L1 -5207 1254 4 2223 98 3 7 chr3 158552180 158552487 -59484671 + AluSq SINE Alu 1 306 -7 699 254 9 77 chr3 158552852 158553072 -59484086 + MER63A DNA MER1_type 6 210 0 660 315 143 22 chr3 158553096 158553635 -59483523 - L2 LINE L2 -1 3312 2717 445 240 74 2 chr3 158553704 158553885 -59483273 + L1ME1 LINE L1 5203 5406 -745 734 220 44 6 chr3 158553957 158554142 -59483016 + L1ME1 LINE L1 5609 5797 -369 681 282 56 5 chr3 158554166 158554382 -59482776 + L1ME1 LINE L1 5940 6166 0 2022 121 0 7 chr3 158554985 158555294 -59481864 + AluSc SINE Alu 1 307 0 24 53 0 0 chr3 158555483 158555521 -59481637 + AT_rich Low_complexity Low_complexity 1 38 0 1520 335 120 30 chr3 158555859 158556163 -59480995 + ERVL LTR ERVL 3057 3332 -2432 2187 102 7 3 chr3 158556163 158556466 -59480692 + AluSc SINE Alu 1 304 -5 1520 335 120 30 chr3 158556466 158557619 -59479539 + ERVL LTR ERVL 3332 4686 -1078 235 352 0 0 chr3 158558014 158558105 -59479053 - MLT1J2 LTR MaLR -275 175 85 276 30 0 0 chr3 158558105 158558138 -59479020 + (A)n Simple_repeat Simple_repeat 1 33 0 364 352 97 9 chr3 158558217 158558444 -59478714 + ERVL LTR ERVL 4909 5155 -609 23 68 0 0 chr3 158558672 158558716 -59478442 + AT_rich Low_complexity Low_complexity 1 44 0 767 356 62 22 chr3 158559112 158559562 -59477596 + LTR67 LTR ERVL 90 557 0 413 36 0 18 chr3 158560380 158560436 -59476722 + (TG)n Simple_repeat Simple_repeat 2 56 0 23 0 0 0 chr3 158561057 158561080 -59476078 + AT_rich Low_complexity Low_complexity 1 23 0 27 73 0 0 chr3 158561316 158561371 -59475787 + AT_rich Low_complexity Low_complexity 1 55 0 25 105 0 0 chr3 158561956 158562051 -59475107 + AT_rich Low_complexity Low_complexity 1 95 0 531 279 12 60 chr3 158562064 158562315 -59474843 - L1ME2 LINE L1 -42 6382 6144 462 202 0 51 chr3 158562343 158562491 -59474667 - L1ME2 LINE L1 -762 5668 5529 834 191 35 10 chr3 158562638 158562837 -59474321 - L1MD1 LINE L1 0 6242 6039 1374 291 72 23 chr3 158562837 158563582 -59473576 - L1ME2 LINE L1 -1742 4664 3883 * 2471 234 63 12 chr3 158563580 158564327 -59472831 + L1M4 LINE L1 4309 5093 -1053 1927 138 10 13 chr3 158564327 158564666 -59472492 - AluSx SINE Alu 0 338 1 894 218 81 50 chr3 158564685 158565103 -59472055 - L1ME2 LINE L1 -2959 3447 3017 * 2759 243 56 24 chr3 158565078 158566434 -59470724 - L1ME2 LINE L1 -4368 2038 652 1791 204 33 30 chr3 158566444 158566994 -59470164 + MLT2A2 LTR ERVL 1 549 -5 880 267 50 47 chr3 158567071 158567670 -59469488 - L1M4 LINE L1 -964 5182 4582 1052 214 22 5 chr3 158567691 158567915 -59469243 + MLT1C LTR MaLR 1 228 -239 642 154 9 9 chr3 158567921 158568031 -59469127 + MLT1C LTR MaLR 357 466 -1 612 272 40 32 chr3 158568035 158568658 -59468500 - L1M4 LINE L1 -1584 4562 3864 861 301 40 6 chr3 158569639 158569961 -59467197 + LTR16A LTR ERVL 116 448 -2 212 83 0 28 chr3 158570013 158570049 -59467109 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2276 87 3 0 chr3 158570052 158570338 -59466820 - AluSp SINE Alu -26 287 1 1830 187 16 40 chr3 158571293 158571667 -59465491 + MLT1A1 LTR MaLR 1 365 0 27 29 0 0 chr3 158571889 158571923 -59465235 + AT_rich Low_complexity Low_complexity 1 34 0 511 299 101 28 chr3 158573080 158573458 -59463700 - LTR16A1 LTR ERVL -3 476 73 201 229 43 0 chr3 158575247 158575317 -59461841 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 * 216 221 13 13 chr3 158575265 158575342 -59461816 + (TA)n Simple_repeat Simple_repeat 1 77 0 336 304 59 37 chr3 158575777 158576043 -59461115 - L1M4 LINE L1 -1826 4320 4047 286 323 53 11 chr3 158576096 158576285 -59460873 - L1M4 LINE L1 -2177 3969 3773 209 156 44 0 chr3 158576538 158576583 -59460575 + (CA)n Simple_repeat Simple_repeat 1 47 0 222 156 0 0 chr3 158577471 158577516 -59459642 + T-rich Low_complexity Low_complexity 2 46 0 670 154 7 84 chr3 158578072 158578215 -59458943 - FLAM_A SINE Alu 0 133 2 189 0 0 0 chr3 158578381 158578402 -59458756 + (A)n Simple_repeat Simple_repeat 1 21 0 949 273 134 38 chr3 158578432 158578928 -59458230 - MLT1G3 LTR MaLR -49 504 2 26 0 0 0 chr3 158579383 158579409 -59457749 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr3 158579578 158579606 -59457552 + AT_rich Low_complexity Low_complexity 1 28 0 387 252 76 8 chr3 158579825 158579944 -59457214 + HsTC2 DNA Tc2 1283 1585 -313 1183 274 42 65 chr3 158580054 158580718 -59456440 + L1ME3A LINE L1 4906 5547 -623 2201 88 3 7 chr3 158580718 158581023 -59456135 + AluY SINE Alu 1 304 -7 1183 274 42 65 chr3 158581023 158581462 -59455696 + L1ME3A LINE L1 5547 5994 -176 1053 207 51 133 chr3 158581700 158582250 -59454908 + MLT1D LTR MaLR 1 505 0 2346 49 0 3 chr3 158583112 158583399 -59453759 + AluY SINE Alu 15 300 -11 3314 76 2 4 chr3 158583582 158584043 -59453115 - L1PA13 LINE L1 -5 6158 5699 29 0 0 0 chr3 158584576 158584605 -59452553 + AT_rich Low_complexity Low_complexity 1 29 0 234 292 11 11 chr3 158585982 158586071 -59451087 + (TA)n Simple_repeat Simple_repeat 2 90 0 2275 105 0 6 chr3 158586769 158587084 -59450074 + AluSq SINE Alu 1 313 0 3002 191 26 24 chr3 158587403 158588058 -59449100 + L1MC1 LINE L1 5677 6332 -1 491 215 0 0 chr3 158588198 158588291 -59448867 + MLT2C2 LTR ERVL 1 93 -371 1474 183 3 0 chr3 158588304 158588589 -59448569 - L1MA6 LINE L1 0 6300 6015 4890 234 42 33 chr3 158588589 158591471 -59445687 - L1 LINE L1 -2677 4888 2095 673 327 44 42 chr3 158591758 158592210 -59444948 - L1 LINE L1 -5827 1669 1217 587 257 68 20 chr3 158592330 158592570 -59444588 - MLT2F LTR ERVL -109 554 135 * 1129 220 78 68 chr3 158592564 158592881 -59444277 + MLT2C2 LTR ERVL 76 399 -65 297 0 0 0 chr3 158592881 158592914 -59444244 + (TG)n Simple_repeat Simple_repeat 1 33 0 1129 220 78 68 chr3 158592914 158592978 -59444180 + MLT2C2 LTR ERVL 399 461 -3 1438 249 27 3 chr3 158593138 158593472 -59443686 + MER2 DNA MER2_type 2 343 -1 245 216 0 0 chr3 158593964 158594015 -59443143 + L2 LINE L2 2916 2966 -306 21 0 0 0 chr3 158594300 158594321 -59442837 + AT_rich Low_complexity Low_complexity 1 21 0 347 238 79 16 chr3 158595917 158596043 -59441115 - MER94 DNA DNA 0 134 1 3407 176 21 0 chr3 158596060 158596691 -59440467 - L1PA16 LINE L1 -9 6157 5514 3853 187 19 6 chr3 158596951 158598265 -59438893 - L1PA16 LINE L1 -340 5826 4496 905 165 0 68 chr3 158598287 158598463 -59438695 + FRAM SINE Alu 2 165 -1 2063 136 10 0 chr3 158598526 158598828 -59438330 - AluSq SINE Alu -8 305 1 2509 42 3 6 chr3 158598899 158599211 -59437947 + AluY SINE Alu 1 311 0 516 342 72 76 chr3 158599229 158599743 -59437415 - MLT1K LTR MaLR -75 513 2 1994 178 35 28 chr3 158600776 158601204 -59435954 - Tigger2a DNA MER2_type 0 434 4 189 282 28 14 chr3 158601489 158601560 -59435598 + MIR3 SINE MIR 132 203 -5 217 50 25 25 chr3 158601765 158601805 -59435353 + (TA)n Simple_repeat Simple_repeat 2 41 0 8995 235 43 10 chr3 158601850 158603914 -59433244 + ERVL-C1 LTR ERVL 3624 5755 -9 1232 236 17 57 chr3 158603915 158604321 -59432837 + MLT2C1 LTR ERVL 1 390 -7 5689 164 29 35 chr3 158604625 158605848 -59431310 + L1MC1 LINE L1 5106 6333 0 189 0 0 0 chr3 158606503 158606524 -59430634 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr3 158607195 158607217 -59429941 + AT_rich Low_complexity Low_complexity 1 22 0 693 260 257 14 chr3 158607672 158607964 -59429194 - MLT1G1 LTR MaLR -15 580 218 1299 127 0 11 chr3 158608057 158608246 -59428912 + AluSg/x SINE Alu 104 290 -22 684 278 139 29 chr3 158608247 158608664 -59428494 + Charlie7 DNA MER1_type 397 859 -1753 277 287 23 11 chr3 158608692 158608866 -59428292 + (TA)n Simple_repeat Simple_repeat 2 177 0 540 269 58 39 chr3 158608994 158609202 -59427956 + MLT1H1 LTR MaLR 334 545 -10 25 31 0 0 chr3 158609369 158609401 -59427757 + AT_rich Low_complexity Low_complexity 1 32 0 593 259 141 0 chr3 158609607 158609777 -59427381 + MIR SINE MIR 69 262 0 21 89 0 0 chr3 158610310 158610366 -59426792 + AT_rich Low_complexity Low_complexity 1 56 0 1166 130 0 0 chr3 158610375 158610544 -59426614 + AluSg/x SINE Alu 131 299 -13 1241 292 87 72 chr3 158611350 158612048 -59425110 + HAL1 LINE L1 238 924 -1583 1178 284 45 37 chr3 158612048 158612562 -59424596 - LTR33 LTR ERVL -3 518 1 1241 292 87 72 chr3 158612562 158613272 -59423886 + HAL1 LINE L1 924 1667 -840 216 0 0 0 chr3 158613416 158613440 -59423718 + (TG)n Simple_repeat Simple_repeat 2 25 0 245 307 0 0 chr3 158613471 158613546 -59423612 + (CATATA)n Simple_repeat Simple_repeat 2 76 0 301 278 104 0 chr3 158613790 158613905 -59423253 + MIR SINE MIR 125 251 -11 383 271 39 39 chr3 158614550 158614679 -59422479 - MIR3 SINE MIR -52 156 28 22 0 0 0 chr3 158615683 158615705 -59421453 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr3 158615837 158615873 -59421285 + AT_rich Low_complexity Low_complexity 1 36 0 440 336 88 41 chr3 158615893 158616428 -59420730 - L1M4 LINE L1 -979 5167 4608 222 183 24 37 chr3 158616577 158616659 -59420499 + T-rich Low_complexity Low_complexity 1 81 0 243 298 77 30 chr3 158616742 158616910 -59420248 - L1M4 LINE L1 -1896 4250 4075 26 64 0 0 chr3 158617041 158617088 -59420070 + AT_rich Low_complexity Low_complexity 1 47 0 752 298 25 0 chr3 158617956 158618154 -59419004 + MIR SINE MIR 32 234 -28 772 232 53 88 chr3 158619657 158620066 -59417092 - Charlie8 DNA MER1_type -2151 266 1 2254 106 0 0 chr3 158620523 158620825 -59416333 + AluSx SINE Alu 1 302 -10 490 241 32 117 chr3 158621268 158621517 -59415641 - LTR33 LTR ERVL -2 519 292 268 288 50 0 chr3 158621566 158621646 -59415512 + MIR SINE MIR 141 224 -38 197 84 99 0 chr3 158621797 158621868 -59415290 + (TA)n Simple_repeat Simple_repeat 2 79 0 2154 119 0 3 chr3 158621948 158622363 -59414795 - AluSx SINE Alu 0 414 1 469 211 0 0 chr3 158623160 158623236 -59413922 + MER21B LTR ERV1 12 87 -776 2879 224 79 14 chr3 158623261 158623954 -59413204 + MER21B LTR ERV1 19 756 -107 1050 143 0 0 chr3 158623960 158624114 -59413044 + MLT1B LTR MaLR 230 383 -7 387 0 0 0 chr3 158624160 158624203 -59412955 + (TA)n Simple_repeat Simple_repeat 2 44 0 796 229 107 47 chr3 158624705 158624958 -59412200 + L1ME2 LINE L1 5789 6056 -108 417 280 159 6 chr3 158625106 158625288 -59411870 + LTR16B LTR ERVL 241 450 -14 326 138 58 30 chr3 158625302 158625388 -59411770 + L1ME2 LINE L1 6068 6161 -1 493 211 143 25 chr3 158626365 158626526 -59410632 - L2 LINE L2 -14 3258 3120 240 242 0 0 chr3 158626556 158626618 -59410540 - MER92C LTR ERV1 0 554 493 317 280 0 0 chr3 158626715 158626790 -59410368 - MER92B LTR ERV1 -557 79 5 594 0 0 0 chr3 158626993 158627059 -59410099 + (TA)n Simple_repeat Simple_repeat 2 67 0 27 49 0 0 chr3 158627935 158627976 -59409182 + AT_rich Low_complexity Low_complexity 1 41 0 186 354 52 10 chr3 158629163 158629259 -59407899 + MIR SINE MIR 31 130 -78 284 267 20 20 chr3 158630707 158630808 -59406350 + GA-rich Low_complexity Low_complexity 2 102 0 815 160 0 0 chr3 158631457 158631576 -59405582 + FLAM_C SINE Alu 1 119 -24 300 70 0 0 chr3 158631579 158631622 -59405536 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 952 254 25 39 chr3 158632300 158632584 -59404574 + MLT1A1 LTR MaLR 84 363 -2 316 290 137 58 chr3 158632620 158632913 -59404245 - MLT1I LTR MaLR 0 409 94 29 28 0 0 chr3 158633218 158633254 -59403904 + AT_rich Low_complexity Low_complexity 1 36 0 1499 127 120 4 chr3 158633416 158633675 -59403483 + AluSx SINE Alu 24 312 0 303 270 0 45 chr3 158633784 158633873 -59403285 - L2 LINE L2 0 3313 3229 1388 178 47 22 chr3 158634184 158634481 -59402677 + AluJo SINE Alu 1 304 0 208 314 20 10 chr3 158634842 158634944 -59402214 - L2 LINE L2 -129 3184 3082 9507 188 12 19 chr3 158634948 158636745 -59400413 + LTR33-int LTR ERVL 2984 4768 -255 1087 214 86 53 chr3 158636937 158637296 -59399862 + MLT1C LTR MaLR 45 415 -52 307 286 62 0 chr3 158637285 158637397 -59399761 + LTR33 LTR ERVL 11 129 -392 * 1676 247 49 15 chr3 158637886 158638355 -59398803 + MLT1E3 LTR MaLR 140 624 0 1304 148 0 24 chr3 158639247 158639457 -59397701 + MLT1A1 LTR MaLR 1 205 -160 267 260 47 93 chr3 158639497 158639647 -59397511 - MIR SINE MIR -38 224 82 279 0 0 0 chr3 158640135 158640166 -59396992 + (CA)n Simple_repeat Simple_repeat 1 31 0 182 402 0 29 chr3 158640443 158640545 -59396613 + MIR SINE MIR 16 114 -148 219 69 0 0 chr3 158640737 158640766 -59396392 + (CAT)n Simple_repeat Simple_repeat 2 30 0 407 317 77 11 chr3 158640793 158640976 -59396182 + MIR SINE MIR 20 214 -48 6122 126 19 16 chr3 158643102 158644068 -59393090 - LTR5 LTR ERVK 0 969 1 1726 90 30 9 chr3 158644348 158644670 -59392488 + LTR7 LTR ERV1 1 418 -32 21 57 0 0 chr3 158644756 158644791 -59392367 + AT_rich Low_complexity Low_complexity 1 35 0 2089 118 6 6 chr3 158644903 158645241 -59391917 + HERVH LTR ERV1 3656 3993 -3720 4370 142 0 1 chr3 158645243 158645906 -59391252 + HERVH LTR ERV1 4488 5149 -2564 1317 148 19 0 chr3 158645907 158646123 -59391035 + HERVH LTR ERV1 5600 5819 -1894 2360 96 50 13 chr3 158646123 158646499 -59390659 + HERVH LTR ERV1 7324 7713 0 2637 77 117 5 chr3 158646499 158646902 -59390256 + LTR7 LTR ERV1 1 448 -2 1205 307 120 19 chr3 158646947 158647472 -59389686 - MLT1G1 LTR MaLR -17 578 1 1121 44 0 7 chr3 158648189 158648325 -59388833 - THE1B LTR MaLR -2 362 228 525 250 68 99 chr3 158648320 158648644 -59388514 - MER39 LTR ERV1 -130 577 264 * 204 250 0 0 chr3 158648726 158648774 -59388384 + (TA)n Simple_repeat Simple_repeat 1 48 0 1829 199 23 23 chr3 158648790 158649183 -59387975 - Tigger2a DNA MER2_type -41 393 1 24 0 0 0 chr3 158649427 158649451 -59387707 + AT_rich Low_complexity Low_complexity 1 24 0 418 272 52 7 chr3 158650719 158650855 -59386303 + MER31B LTR ERV1 2 143 -323 807 108 33 16 chr3 158650866 158651356 -59385802 + (TA)n Simple_repeat Simple_repeat 1 498 0 47 53 0 0 chr3 158651356 158651431 -59385727 + AT_rich Low_complexity Low_complexity 1 75 0 1313 176 186 26 chr3 158651539 158651846 -59385312 + MLT2B1 LTR ERVL 114 469 -51 224 205 39 0 chr3 158651852 158651930 -59385228 + (TA)n Simple_repeat Simple_repeat 2 82 0 366 180 13 7 chr3 158651946 158652096 -59385062 + (TA)n Simple_repeat Simple_repeat 2 152 0 241 243 38 30 chr3 158653404 158653497 -59383661 - MIR SINE MIR -57 151 56 21 0 0 0 chr3 158654005 158654026 -59383132 + AT_rich Low_complexity Low_complexity 1 21 0 12847 95 2 30 chr3 158655263 158657270 -59379888 - HERVH LTR ERV1 -4742 2971 1020 585 136 30 6 chr3 158657416 158657585 -59379573 + (TA)n Simple_repeat Simple_repeat 2 174 0 28 29 0 0 chr3 158657596 158657631 -59379527 + AT_rich Low_complexity Low_complexity 1 35 0 1532 195 64 6 chr3 158657633 158657961 -59379197 + MER31A LTR ERV1 125 471 -14 2549 157 30 63 chr3 158659086 158659661 -59377497 - L1MA9 LINE L1 0 6312 5757 2374 197 2 16 chr3 158659668 158660176 -59376982 + L1M2 LINE L1 4902 5402 -744 1844 121 10 43 chr3 158660178 158660483 -59376675 - THE1B LTR MaLR -2 362 68 486 172 0 0 chr3 158660496 158660583 -59376575 + L1M2 LINE L1 5395 5481 -831 2186 151 54 32 chr3 158660720 158661160 -59375998 + MSTA LTR MaLR 1 428 0 22 0 0 0 chr3 158662121 158662143 -59375015 + AT_rich Low_complexity Low_complexity 1 22 0 808 223 117 100 chr3 158662363 158662722 -59374436 + MLT1A1 LTR MaLR 1 365 0 323 325 16 75 chr3 158662737 158662925 -59374233 + L2 LINE L2 2875 3051 -221 227 338 102 13 chr3 158663173 158663330 -59373828 + L2 LINE L2 1786 1956 -1358 1395 267 74 42 chr3 158663663 158664161 -59372997 + MLT1E LTR MaLR 56 569 -24 330 26 0 0 chr3 158664161 158664200 -59372958 + (CA)n Simple_repeat Simple_repeat 2 40 0 1850 183 12 52 chr3 158664735 158665140 -59372018 - MLT1B LTR MaLR -1 389 1 1587 163 21 17 chr3 158665278 158665567 -59371591 - AluJo SINE Alu -22 290 1 24 0 0 0 chr3 158665677 158665701 -59371457 + AT_rich Low_complexity Low_complexity 1 24 0 743 257 114 7 chr3 158666841 158667121 -59370037 + MER5C DNA MER1_type 1 310 -14 573 312 127 31 chr3 158668239 158668704 -59368454 + L1ME3A LINE L1 5437 5946 -224 44 35 0 0 chr3 158670673 158670731 -59366427 + AT_rich Low_complexity Low_complexity 1 58 0 1671 135 0 0 chr3 158670842 158671086 -59366072 - MER4D LTR ERV1 -575 328 85 486 121 108 0 chr3 158671083 158671166 -59365992 + MER34 LTR ERV1 451 542 0 * 2750 186 31 71 chr3 158671786 158672314 -59364844 - LTR8 LTR ERV1 0 691 198 252 0 0 0 chr3 158672314 158672342 -59364816 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2750 186 31 71 chr3 158672342 158672533 -59364625 - LTR8 LTR ERV1 -493 198 1 368 347 62 27 chr3 158673369 158673594 -59363564 - MIR SINE MIR 0 262 30 1895 128 7 17 chr3 158673950 158674238 -59362920 - AluSp SINE Alu -28 285 1 228 280 101 60 chr3 158674892 158675060 -59362098 + MIR SINE MIR 74 248 -14 2347 139 49 7 chr3 158675176 158675585 -59361573 + MSTA LTR MaLR 1 426 -2 490 317 78 9 chr3 158675617 158675847 -59361311 - MIR SINE MIR 0 262 17 3240 273 32 44 chr3 158676102 158676575 -59360583 - HERVL74 LTR ERVL -2560 3125 2648 2369 171 14 18 chr3 158676575 158677009 -59360149 + MSTB1 LTR MaLR 1 432 0 3240 273 32 44 chr3 158677009 158677580 -59359578 - HERVL74 LTR ERVL -3037 2648 2093 2741 201 83 48 chr3 158677739 158678474 -59358684 - HERVL74 LTR ERVL -3589 2096 1336 427 297 14 0 chr3 158678480 158678625 -59358533 + L1M4 LINE L1 4447 4593 -1553 464 238 40 0 chr3 158678641 158678767 -59358391 + L1M4 LINE L1 4738 4868 -1278 2331 234 48 24 chr3 158678781 158679798 -59357360 - L1M4 LINE L1 -4814 2143 1007 284 306 65 41 chr3 158680477 158680647 -59356511 - L1M4 LINE L1 -6658 201 28 513 208 6 3 chr3 158681215 158681571 -59355587 + (TA)n Simple_repeat Simple_repeat 1 357 0 265 219 116 24 chr3 158681797 158681961 -59355197 + Charlie7 DNA MER1_type 2434 2612 0 1970 198 27 12 chr3 158682589 158683003 -59354155 + MSTB LTR MaLR 5 424 -2 936 194 104 36 chr3 158683707 158684018 -59353140 - MSTA LTR MaLR 0 428 71 2917 142 15 15 chr3 158684018 158684496 -59352662 - MSTA-int LTR MaLR -21 1559 1082 454 253 71 44 chr3 158684496 158684678 -59352480 + PABL_B-int LTR ERV1 438 624 -1162 * 2545 316 47 67 chr3 158684645 158686577 -59350581 + PABL_B-int LTR ERV1 453 2344 -4778 746 128 0 0 chr3 158686757 158686866 -59350292 + AluSq/x SINE Alu 1 109 -204 793 80 0 24 chr3 158686869 158686994 -59350164 + (GGAA)n Simple_repeat Simple_repeat 3 124 0 2480 359 31 24 chr3 158686999 158688720 -59348438 + PABL_B-int LTR ERV1 2524 4710 -2978 863 323 56 27 chr3 158688948 158689397 -59347761 + PABL_B-int LTR ERV1 4674 5740 -2016 346 319 19 19 chr3 158690588 158690745 -59346413 + PABL_B-int LTR ERV1 6095 6251 -425 616 268 95 48 chr3 158691178 158691586 -59345572 + LTR38 LTR ERV1 140 547 -9 217 172 31 0 chr3 158691686 158691750 -59345408 + (TA)n Simple_repeat Simple_repeat 1 66 0 1290 225 19 3 chr3 158692143 158692450 -59344708 + L1MA9 LINE L1 5865 6176 -136 1005 286 141 16 chr3 158692928 158693495 -59343663 + L1ME3A LINE L1 5334 5971 -199 235 259 78 26 chr3 158693533 158693649 -59343509 + L1ME3A LINE L1 6048 6169 -1 390 262 128 36 chr3 158693713 158694426 -59342732 + L1M4 LINE L1 4342 5119 -1027 24 0 0 0 chr3 158694469 158694493 -59342665 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr3 158694627 158694662 -59342496 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr3 158694925 158694958 -59342200 + AT_rich Low_complexity Low_complexity 1 33 0 1622 63 0 0 chr3 158695681 158695886 -59341272 - AluY SINE Alu -8 303 99 220 378 44 0 chr3 158697424 158697514 -59339644 - MIR3 SINE MIR -34 174 81 302 324 93 22 chr3 158699300 158699525 -59337633 - MIR SINE MIR -10 252 12 3849 135 3 17 chr3 158699670 158700315 -59336843 + L1PB2 LINE L1 5509 6144 -7 215 177 16 0 chr3 158700652 158700714 -59336444 + GA-rich Low_complexity Low_complexity 2 64 0 21 57 0 0 chr3 158700974 158701009 -59336149 + AT_rich Low_complexity Low_complexity 1 35 0 24 85 0 0 chr3 158702406 158702465 -59334693 + AT_rich Low_complexity Low_complexity 1 59 0 4562 64 38 3 chr3 158702800 158703802 -59333356 - MER11A LTR ERVK 0 1266 1 431 256 44 29 chr3 158705098 158705235 -59331923 - LTR16A LTR ERVL -17 433 295 556 275 22 14 chr3 158705694 158705832 -59331326 - LTR16A LTR ERVL -202 248 110 314 342 79 2 chr3 158706550 158706724 -59330434 + MIR SINE MIR 16 212 -50 338 254 38 0 chr3 158706805 158706908 -59330250 - MIR SINE MIR -44 218 112 293 333 135 31 chr3 158707044 158707488 -59329670 - L2 LINE L2 -1764 1550 1061 208 229 36 60 chr3 158708274 158708357 -59328801 + L2 LINE L2 3076 3156 -157 272 194 0 56 chr3 158708393 158708465 -59328693 + CT-rich Low_complexity Low_complexity 4 71 0 368 295 74 0 chr3 158708493 158708615 -59328543 + L2 LINE L2 3183 3313 0 195 324 114 9 chr3 158709260 158709365 -59327793 - L3 LINE CR1 -21 1556 1441 243 286 11 44 chr3 158709627 158709718 -59327440 - MER5A DNA MER1_type 0 189 102 1495 134 0 91 chr3 158709762 158710060 -59327098 - AluSg SINE Alu -14 296 26 862 172 0 32 chr3 158710563 158710720 -59326438 - AluJb SINE Alu -31 281 130 351 0 0 0 chr3 158710923 158710962 -59326196 + (CA)n Simple_repeat Simple_repeat 2 40 0 21 82 0 0 chr3 158711454 158711503 -59325655 + AT_rich Low_complexity Low_complexity 1 49 0 391 226 21 21 chr3 158711515 158711608 -59325550 - MIR SINE MIR -102 160 68 1593 207 0 3 chr3 158711663 158711953 -59325205 - AluJo SINE Alu -23 289 1 23 0 0 0 chr3 158712072 158712095 -59325063 + AT_rich Low_complexity Low_complexity 1 23 0 1502 178 29 91 chr3 158712281 158712521 -59324637 - MLT1B LTR MaLR 0 390 185 2137 123 0 0 chr3 158712521 158712822 -59324336 - AluSx SINE Alu -11 301 1 1502 178 29 91 chr3 158712822 158712997 -59324161 - MLT1B LTR MaLR -205 185 1 371 318 13 13 chr3 158712997 158713151 -59324007 - MIR SINE MIR -4 258 105 248 309 12 24 chr3 158713497 158713581 -59323577 + L2 LINE L2 3185 3267 -5 327 222 7 30 chr3 158714045 158714180 -59322978 + GA-rich Low_complexity Low_complexity 2 133 0 510 259 55 18 chr3 158714250 158714470 -59322688 + HAL1 LINE L1 1026 1253 -1254 1547 279 135 29 chr3 158714574 158715572 -59321586 + HAL1 LINE L1 1404 2507 0 300 194 61 51 chr3 158715699 158715797 -59321361 + L1MC4 LINE L1 6607 6705 -1337 24 67 0 0 chr3 158716435 158716480 -59320678 + AT_rich Low_complexity Low_complexity 1 45 0 332 318 22 15 chr3 158716480 158716655 -59320503 - MIR SINE MIR -56 206 34 21 36 0 0 chr3 158719910 158719938 -59317220 + AT_rich Low_complexity Low_complexity 1 28 0 6717 99 83 3 chr3 158720874 158721901 -59315257 + HERVH LTR ERV1 1 1109 -6604 193 169 15 46 chr3 158722023 158722088 -59315070 + CT-rich Low_complexity Low_complexity 3 65 0 345 245 119 26 chr3 158722088 158722239 -59314919 - HAL1 LINE L1 -2300 207 43 25 69 0 0 chr3 158722856 158722885 -59314273 + AT_rich Low_complexity Low_complexity 1 29 0 21 175 0 0 chr3 158722890 158722930 -59314228 + GC_rich Low_complexity Low_complexity 1 40 0 189 0 0 0 chr3 158722948 158722969 -59314189 + (T)n Simple_repeat Simple_repeat 1 21 0 26 30 0 0 chr3 158924065 158924098 -59113060 + AT_rich Low_complexity Low_complexity 1 33 0 534 277 69 40 chr3 158924152 158924629 -59112529 + L1M4 LINE L1 4102 4592 -1554 205 250 0 0 chr3 158924655 158924703 -59112455 + (TG)n Simple_repeat Simple_repeat 2 49 0 3345 157 34 5 chr3 158924735 158925913 -59111245 - L1PA12 LINE L1 -304 6179 4971 231 125 0 0 chr3 158925913 158925953 -59111205 + (T)n Simple_repeat Simple_repeat 1 40 0 11593 23 0 4 chr3 158926005 158928139 -59109019 - L1PA3 LINE L1 0 6155 4028 6425 45 0 0 chr3 158928140 158928988 -59108170 + L1P LINE L1 3125 3972 -2174 817 184 0 151 chr3 158929522 158929541 -59107617 - L1PA12 LINE L1 -1476 4985 4965 2202 129 25 25 chr3 158929541 158929905 -59107253 + THE1B LTR MaLR 1 364 0 817 184 0 151 chr3 158929905 158930190 -59106968 - L1PA12 LINE L1 -1496 4965 4727 11449 238 26 18 chr3 158930190 158933258 -59103900 - L1PA12 LINE L1 -2309 4152 1013 180 0 0 0 chr3 158933679 158933699 -59103459 + (T)n Simple_repeat Simple_repeat 1 20 0 1273 156 10 0 chr3 158933927 158934132 -59103026 - AluSq SINE Alu -11 302 96 21 95 0 0 chr3 158934372 158934435 -59102723 + AT_rich Low_complexity Low_complexity 1 63 0 35 0 0 0 chr3 158934538 158934573 -59102585 + AT_rich Low_complexity Low_complexity 1 35 0 2146 180 126 22 chr3 158934872 158935048 -59102110 + MLT2B3 LTR ERVL 1 157 -397 447 35 0 0 chr3 158935048 158935105 -59102053 + (TC)n Simple_repeat Simple_repeat 1 57 0 2146 180 126 22 chr3 158935105 158935382 -59101776 + MLT2B3 LTR ERVL 157 513 -41 506 16 16 0 chr3 158935382 158935445 -59101713 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 2146 180 126 22 chr3 158935445 158935489 -59101669 + MLT2B3 LTR ERVL 513 551 -3 2313 81 3 7 chr3 158935645 158935942 -59101216 + AluY SINE Alu 1 296 -15 23 33 0 0 chr3 158936430 158936460 -59100698 + AT_rich Low_complexity Low_complexity 1 30 0 1675 183 63 46 chr3 158936464 158936530 -59100628 - MSTB1 LTR MaLR 0 432 369 2257 118 0 3 chr3 158936530 158936844 -59100314 + AluSq SINE Alu 1 313 0 1675 183 63 46 chr3 158936844 158937188 -59099970 - MSTB1 LTR MaLR -63 369 15 1174 201 58 56 chr3 158937900 158938328 -59098830 + L1ME1 LINE L1 4667 5095 -1051 1175 181 11 47 chr3 158938332 158938488 -59098670 + MLT2C2 LTR ERVL 1 144 -320 1726 146 49 75 chr3 158938488 158938873 -59098285 - THE1C LTR MaLR 0 375 1 1175 181 11 47 chr3 158938873 158938992 -59098166 + MLT2C2 LTR ERVL 144 266 -198 1586 35 0 0 chr3 158938992 158939194 -59097964 - L1PA4 LINE L1 -613 5542 5341 5177 38 3 0 chr3 158939194 158939816 -59097342 + L1PA4 LINE L1 5529 6155 0 406 201 142 95 chr3 158939816 158939871 -59097287 + MLT2C2 LTR ERVL 247 298 -166 2200 170 34 36 chr3 158939871 158940365 -59096793 - L1MB1 LINE L1 0 6168 5676 406 201 142 95 chr3 158940365 158940478 -59096680 + MLT2C2 LTR ERVL 298 423 -41 1849 237 68 26 chr3 158940556 158941076 -59096082 + L1ME1 LINE L1 5174 5738 -428 219 69 0 0 chr3 158941076 158941105 -59096053 + (TA)n Simple_repeat Simple_repeat 1 29 0 1849 237 68 26 chr3 158941105 158941342 -59095816 + L1ME1 LINE L1 5738 5964 -202 1760 156 17 17 chr3 158941353 158941648 -59095510 - AluJb SINE Alu -17 295 1 243 316 23 23 chr3 158941658 158941791 -59095367 + L1ME1 LINE L1 6029 6161 -5 1536 206 21 0 chr3 158942615 158942735 -59094423 + AluJb SINE Alu 1 117 -195 420 20 0 0 chr3 158942735 158942784 -59094374 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 1536 206 21 0 chr3 158942784 158942945 -59094213 + AluJb SINE Alu 117 288 -24 23 33 0 0 chr3 158943553 158943583 -59093575 + AT_rich Low_complexity Low_complexity 1 30 0 22 94 0 0 chr3 158943773 158943837 -59093321 + AT_rich Low_complexity Low_complexity 1 64 0 198 372 21 11 chr3 158944010 158944104 -59093054 + L2 LINE L2 2551 2645 -669 25 31 0 0 chr3 158944164 158944196 -59092962 + AT_rich Low_complexity Low_complexity 1 32 0 1832 166 7 3 chr3 158944295 158944590 -59092568 + AluSx SINE Alu 11 306 -6 1033 176 34 0 chr3 158944598 158944831 -59092327 + L1 LINE L1 4094 4334 -1812 621 49 0 0 chr3 158944832 158944913 -59092245 + (TTTC)n Simple_repeat Simple_repeat 4 84 0 716 169 25 0 chr3 158944913 158945031 -59092127 - FRAM SINE Alu -32 144 24 420 290 19 0 chr3 158945196 158945303 -59091855 + MER81 DNA DNA 5 113 -1 399 299 70 28 chr3 158945317 158945503 -59091655 - MLT2E LTR ERVL -455 208 8 1176 257 68 14 chr3 158945681 158946784 -59090374 - L1MD2 LINE L1 -179 5987 4862 722 278 53 41 chr3 158946811 158947246 -59089912 + L1MDa LINE L1 35 474 -6066 24 0 0 0 chr3 158947353 158947377 -59089781 + AT_rich Low_complexity Low_complexity 1 24 0 578 289 149 0 chr3 158947422 158947616 -59089542 + L2 LINE L2 2808 3030 -283 466 292 8 8 chr3 158947622 158947742 -59089416 + L2 LINE L2 3194 3313 0 340 265 97 97 chr3 158948094 158948373 -59088785 + L1ME4a LINE L1 5747 6025 -96 33 85 0 0 chr3 158948815 158948897 -59088261 + AT_rich Low_complexity Low_complexity 1 82 0 308 272 245 0 chr3 158950006 158950153 -59087005 - MIR SINE MIR -12 250 68 33 0 0 0 chr3 158950518 158950551 -59086607 + AT_rich Low_complexity Low_complexity 1 33 0 256 293 60 26 chr3 158950770 158950886 -59086272 - MIR SINE MIR -95 167 48 2313 65 3 20 chr3 158951036 158951342 -59085816 - AluY SINE Alu -10 301 1 2040 125 30 3 chr3 158952262 158952566 -59084592 - AluSx SINE Alu 0 312 1 451 235 124 20 chr3 158952866 158953019 -59084139 + MIR SINE MIR 65 233 -29 4581 155 21 3 chr3 158953160 158954055 -59083103 + L1 LINE L1 4423 5333 -813 2348 58 0 0 chr3 158954055 158954330 -59082828 + AluY SINE Alu 35 309 -2 185 259 0 35 chr3 158954699 158954757 -59082401 - MIR SINE MIR -5 257 202 2197 87 20 7 chr3 158955166 158955464 -59081694 + AluY SINE Alu 1 302 -9 1233 101 0 0 chr3 158955465 158955624 -59081534 + AluSp SINE Alu 134 292 -21 37 39 0 0 chr3 158955624 158955675 -59081483 + AT_rich Low_complexity Low_complexity 1 51 0 3063 155 50 5 chr3 158955699 158956293 -59080865 - L1PA16 LINE L1 -3 6163 5543 276 250 14 0 chr3 158957329 158957401 -59079757 + MIR SINE MIR 43 115 -93 247 68 23 0 chr3 158958024 158958068 -59079090 + L1MA3 LINE L1 6261 6305 0 569 319 150 35 chr3 158958125 158958310 -59078848 + L1MEc LINE L1 1025 1187 -5209 248 0 31 0 chr3 158958310 158958342 -59078816 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 569 319 150 35 chr3 158958342 158958861 -59078297 + L1MEc LINE L1 1187 1810 -4586 21 0 0 0 chr3 158959071 158959092 -59078066 + AT_rich Low_complexity Low_complexity 1 21 0 320 160 40 30 chr3 158959228 158959328 -59077830 + C-rich Low_complexity Low_complexity 4 104 0 2468 181 19 4 chr3 158959337 158959801 -59077357 + L1M1 LINE L1 1392 1862 -5703 1357 99 99 0 chr3 158959811 158960034 -59077124 + L1MA1 LINE L1 6058 6302 0 22 0 0 0 chr3 158960066 158960088 -59077070 + AT_rich Low_complexity Low_complexity 1 22 0 450 318 76 21 chr3 158961767 158962056 -59075102 + LTR16A LTR ERVL 146 450 0 1106 256 126 7 chr3 158964412 158964818 -59072340 + LTR33A LTR ERVL 70 523 0 456 113 0 0 chr3 158964886 158964957 -59072201 + (G)n Simple_repeat Simple_repeat 1 71 0 233 256 37 49 chr3 158965293 158965375 -59071783 - MIR SINE MIR -12 250 170 210 298 58 10 chr3 158965564 158965668 -59071490 + MIR SINE MIR 2 110 -152 3823 39 2 2 chr3 158965715 158966178 -59070980 + L1PA3 LINE L1 5693 6155 0 1773 232 115 34 chr3 158966454 158967248 -59069910 + HAL1 LINE L1 1003 1860 -647 1558 237 93 14 chr3 158967920 158968406 -59068752 + MLT1F LTR MaLR 1 524 -18 2055 134 0 54 chr3 158970425 158970739 -59066419 + AluSx SINE Alu 1 297 -15 652 296 88 25 chr3 158972384 158972624 -59064534 - MIR SINE MIR -3 259 5 750 229 23 6 chr3 158972906 158973081 -59064077 - MER5B DNA MER1_type 0 178 1 359 323 38 65 chr3 158973107 158973370 -59063788 + MIR SINE MIR 7 262 0 501 330 153 0 chr3 158974350 158974553 -59062605 - MIR SINE MIR -26 236 3 21 0 0 0 chr3 158974675 158974696 -59062462 + AT_rich Low_complexity Low_complexity 1 21 0 2327 103 3 3 chr3 158974970 158975280 -59061878 - AluSp SINE Alu -1 312 3 460 270 26 0 chr3 158975501 158975616 -59061542 + MIR SINE MIR 119 236 -26 387 0 0 0 chr3 158977049 158977092 -59060066 + (CA)n Simple_repeat Simple_repeat 2 44 0 24 77 0 0 chr3 158977160 158977212 -59059946 + AT_rich Low_complexity Low_complexity 1 52 0 186 255 0 21 chr3 158978278 158978325 -59058833 - MIR3 SINE MIR -21 187 142 675 317 37 81 chr3 158979262 158979780 -59057378 - LTR33 LTR ERVL -8 513 19 211 279 265 15 chr3 158980103 158980239 -59056919 + MIR3 SINE MIR 34 203 -5 3708 210 70 8 chr3 158980273 158981044 -59056114 - MER21B LTR ERV1 -32 831 13 267 365 106 10 chr3 158981448 158981552 -59055606 - L2 LINE L2 -9 3263 3150 351 0 0 0 chr3 158981644 158981683 -59055475 + (CA)n Simple_repeat Simple_repeat 2 40 0 436 243 18 53 chr3 158981683 158981757 -59055401 - LTR37A LTR ERV1 -23 403 328 1713 228 33 17 chr3 158981757 158982217 -59054941 + MLT1C LTR MaLR 1 467 0 436 243 18 53 chr3 158982217 158982311 -59054847 - LTR37A LTR ERV1 -98 328 241 42224 37 22 1 chr3 158982313 158988326 -59048832 - L1PA2 LINE L1 -7 6148 6 289 258 21 10 chr3 158988393 158988490 -59048668 - LTR37A LTR ERV1 -242 184 87 217 73 24 24 chr3 158988554 158988595 -59048563 + (TC)n Simple_repeat Simple_repeat 2 42 0 415 316 26 0 chr3 158989616 158989730 -59047428 - MIR SINE MIR -79 183 67 2214 114 3 0 chr3 158990751 158991048 -59046110 + AluSx SINE Alu 3 300 -12 4574 159 57 7 chr3 158991167 158992035 -59045123 - L1MA5 LINE L1 -4 6296 5386 43888 42 1 1 chr3 158992051 158998203 -59038955 - L1PA3 LINE L1 -3 6152 1 5461 192 30 24 chr3 158998204 158999497 -59037661 - L1MA5 LINE L1 -751 5395 4095 26 0 0 0 chr3 158999497 158999523 -59037635 + AT_rich Low_complexity Low_complexity 1 26 0 293 326 105 32 chr3 158999781 158999971 -59037187 - MIR SINE MIR -46 216 13 32 75 0 0 chr3 159000814 159000881 -59036277 + AT_rich Low_complexity Low_complexity 1 67 0 299 255 123 40 chr3 159002034 159002362 -59034796 - MLT1H LTR MaLR -19 530 130 291 370 87 22 chr3 159002444 159002628 -59034530 + L2 LINE L2 2911 3106 -166 185 184 0 53 chr3 159002644 159002682 -59034476 + MER5A DNA MER1_type 90 125 -64 300 300 50 50 chr3 159003385 159003545 -59033613 + L3b LINE CR1 1330 1489 -94 2046 255 30 20 chr3 159003650 159004211 -59032947 - MER74B LTR ERVL 0 622 56 185 279 23 0 chr3 159004858 159004901 -59032257 + L3 LINE CR1 1331 1374 -203 33 25 0 0 chr3 159005902 159005942 -59031216 + AT_rich Low_complexity Low_complexity 1 40 0 309 287 93 13 chr3 159006135 159006285 -59030873 - L1MC4a LINE L1 -1925 5952 5791 657 328 107 39 chr3 159006765 159007646 -59029512 - L1MC4a LINE L1 -1071 5144 4204 182 61 0 61 chr3 159008551 159008584 -59028574 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 221 328 74 25 chr3 159010267 159010389 -59026769 - MIR3 SINE MIR -69 139 12 247 330 43 18 chr3 159010392 159010674 -59026484 - L1MC4a LINE L1 -4085 2311 2023 6973 211 33 52 chr3 159010774 159012563 -59024595 - MER52A LTR ERV1 0 1755 1 523 305 78 56 chr3 159013435 159013756 -59023402 - L2 LINE L2 -460 2854 2527 272 295 21 32 chr3 159014006 159014101 -59023057 + L2 LINE L2 3173 3266 -6 23 54 0 0 chr3 159014566 159014603 -59022555 + AT_rich Low_complexity Low_complexity 1 37 0 245 182 18 0 chr3 159014661 159014716 -59022442 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 210 171 0 0 chr3 159015072 159015113 -59022045 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 984 197 37 14 chr3 159016442 159016617 -59020541 + L1MB4 LINE L1 5956 6138 -42 1356 133 0 9 chr3 159016617 159016830 -59020328 + L1MB1 LINE L1 5945 6160 -8 984 197 37 14 chr3 159016830 159016872 -59020286 + L1MB4 LINE L1 6138 6178 -2 22 35 0 0 chr3 159017111 159017140 -59020018 + AT_rich Low_complexity Low_complexity 1 29 0 2213 114 3 3 chr3 159018145 159018451 -59018707 + AluSx SINE Alu 6 311 -1 371 273 61 45 chr3 159018644 159018776 -59018382 + L2 LINE L2 3137 3270 -2 27 49 0 0 chr3 159019163 159019204 -59017954 + AT_rich Low_complexity Low_complexity 1 41 0 1478 225 64 57 chr3 159020032 159020472 -59016686 - MLT2B3 LTR ERVL 0 554 112 32 0 0 0 chr3 159020892 159020924 -59016234 + GC_rich Low_complexity Low_complexity 1 32 0 5353 102 0 4 chr3 159020953 159021745 -59015413 - L1P LINE L1 -1595 4551 3763 573 88 0 0 chr3 159022729 159022809 -59014349 - MADE1 DNA Mariner 0 80 1 930 249 21 88 chr3 159023412 159023834 -59013324 - MLT2C1 LTR ERVL -3 394 1 575 88 0 0 chr3 159026121 159026201 -59010957 - MADE1 DNA Mariner 0 80 1 1175 228 19 83 chr3 159026804 159027225 -59009933 - MLT2C1 LTR ERVL -3 394 1 1928 233 49 47 chr3 159027408 159027961 -59009197 + MLT2B3 LTR ERVL 1 554 0 630 293 102 15 chr3 159027961 159028166 -59008992 - MIR SINE MIR -31 231 9 2067 124 3 3 chr3 159028914 159029213 -59007945 - AluSx SINE Alu -13 299 1 515 274 83 24 chr3 159029926 159030178 -59006980 - L1ME LINE L1 -303 5818 5552 949 188 41 57 chr3 159030611 159030856 -59006302 - MER101B LTR ERV1 -329 241 1 2118 51 55 0 chr3 159032102 159032425 -59004733 + L1PA5 LINE L1 5842 6179 0 1051 234 192 4 chr3 159033346 159033826 -59003332 + LTR50 LTR ERVL 1 650 -145 215 261 0 62 chr3 159034235 159034300 -59002858 + L3 LINE CR1 317 377 -1200 682 282 52 40 chr3 159034376 159034628 -59002530 + L3 LINE CR1 404 658 -919 1378 208 115 22 chr3 159034628 159034941 -59002217 - MER90 LTR ERV1 0 614 273 657 232 60 0 chr3 159034972 159035123 -59002035 - MER90 LTR ERV1 -415 160 1 237 268 41 31 chr3 159035132 159035229 -59001929 + L3 LINE CR1 660 757 -820 192 360 67 55 chr3 159035264 159035339 -59001819 - MIR3 SINE MIR -41 167 94 3514 168 39 12 chr3 159035339 159036030 -59001128 + MER67C LTR ERV1 1 710 0 192 360 67 55 chr3 159036030 159036118 -59001040 - MIR3 SINE MIR -114 94 2 266 317 183 0 chr3 159037725 159037889 -58999269 - L2 LINE L2 -911 2403 2210 553 358 54 4 chr3 159038812 159039052 -58998106 - MIR SINE MIR -8 254 3 268 200 27 0 chr3 159039454 159039529 -58997629 + (CATATA)n Simple_repeat Simple_repeat 4 80 0 34 65 0 0 chr3 159039568 159039630 -58997528 + AT_rich Low_complexity Low_complexity 1 62 0 677 185 51 22 chr3 159039690 159039868 -58997290 + MER53 DNA DNA 4 186 -3 623 239 135 62 chr3 159040592 159041049 -58996109 + MLT1G3 LTR MaLR 33 590 0 435 244 26 60 chr3 159041057 159041291 -58995867 + L1MC5 LINE L1 7396 7621 -340 22 35 0 0 chr3 159041584 159041613 -58995545 + AT_rich Low_complexity Low_complexity 1 29 0 26 64 0 0 chr3 159041752 159041799 -58995359 + AT_rich Low_complexity Low_complexity 1 47 0 24 0 0 0 chr3 159042951 159042975 -58994183 + AT_rich Low_complexity Low_complexity 1 24 0 212 232 0 14 chr3 159043096 159043165 -58993993 + (TA)n Simple_repeat Simple_repeat 1 68 0 288 0 0 0 chr3 159043179 159043211 -58993947 + (TG)n Simple_repeat Simple_repeat 2 33 0 4157 138 33 21 chr3 159043354 159049297 -58987861 + L1PA8 LINE L1 12 6158 -14 4078 211 53 15 chr3 159049982 159051894 -58985264 - L1MB8 LINE L1 -37 6141 4151 214 383 9 9 chr3 159052257 159052372 -58984786 + MIR SINE MIR 43 157 -105 38 39 0 0 chr3 159052599 159052651 -58984507 + AT_rich Low_complexity Low_complexity 1 52 0 228 67 0 0 chr3 159053287 159053317 -58983841 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 353 322 19 49 chr3 159053487 159053692 -58983466 + LTR33 LTR ERVL 1 199 -322 3327 271 80 16 chr3 159053715 159054847 -58982311 - MER69B DNA AcHobo -21 1205 1 374 245 19 130 chr3 159054937 159055074 -58982084 + LTR33A LTR ERVL 337 445 -78 2175 119 3 3 chr3 159055074 159055386 -58981772 + AluSx SINE Alu 1 312 0 374 245 19 130 chr3 159055386 159055456 -58981702 + LTR33A LTR ERVL 445 521 -2 1142 210 129 10 chr3 159055593 159055903 -58981255 + LTR52 LTR ERVL 11 357 -64 25 31 0 0 chr3 159056892 159056924 -58980234 + AT_rich Low_complexity Low_complexity 1 32 0 346 206 69 29 chr3 159057033 159057135 -58980023 - HsTC2a DNA Tc2 -2 740 635 643 304 117 18 chr3 159057137 159057532 -58979626 - HsTC2a DNA Tc2 -308 436 3 237 180 0 0 chr3 159059744 159059794 -58977364 + GA-rich Low_complexity Low_complexity 1 50 0 191 328 30 0 chr3 159060204 159060271 -58976887 - MIR3 SINE MIR -39 169 101 413 205 112 33 chr3 159060391 159060638 -58976520 - MER2 DNA MER2_type 0 345 48 1015 150 183 5 chr3 159060638 159060851 -58976307 + MER6 DNA MER2_type 614 864 -1 431 312 29 23 chr3 159060916 159060964 -58976194 - MER5B DNA MER1_type -1 177 131 3415 119 27 7 chr3 159060964 159061519 -58975639 + L1MA2 LINE L1 5739 6304 0 431 312 29 23 chr3 159061519 159061643 -58975515 - MER5B DNA MER1_type -47 131 4 4204 216 70 47 chr3 159061657 159062231 -58974927 + Charlie1a DNA MER1_type 5 564 -2197 2359 68 0 3 chr3 159062231 159062527 -58974631 - AluY SINE Alu -16 295 1 4204 216 70 47 chr3 159062527 159063367 -58973791 + Charlie1a DNA MER1_type 564 1451 -4 26 74 0 0 chr3 159064169 159064223 -58972935 + AT_rich Low_complexity Low_complexity 1 54 0 189 286 170 18 chr3 159065279 159065391 -58971767 - MIR SINE MIR -40 222 94 311 301 9 0 chr3 159065876 159065989 -58971169 - L1ME LINE L1 -268 5853 5740 193 323 75 30 chr3 159066038 159066171 -58970987 - L2 LINE L2 0 3313 3175 297 343 56 56 chr3 159066383 159066704 -58970454 + MLT1I LTR MaLR 89 409 0 364 308 35 12 chr3 159066827 159066996 -58970162 - L1ME LINE L1 -429 5692 5520 358 340 49 16 chr3 159067522 159067707 -58969451 + MIR3 SINE MIR 15 205 -3 25 0 0 0 chr3 159068661 159068686 -58968472 + AT_rich Low_complexity Low_complexity 1 25 0 285 176 8 160 chr3 159069757 159069882 -58967276 - LTR16C LTR ERVL -4 487 382 1666 227 62 0 chr3 159070930 159071223 -58965935 + MER63B DNA MER1_type 7 333 -729 1665 174 0 0 chr3 159071223 159071498 -58965660 - AluSx SINE Alu -37 275 1 1666 227 62 0 chr3 159071498 159071609 -58965549 + MER63B DNA MER1_type 333 436 0 2333 71 0 13 chr3 159071620 159071931 -58965227 - AluY SINE Alu -4 307 1 33 0 0 0 chr3 159072743 159072776 -58964382 + AT_rich Low_complexity Low_complexity 1 33 0 612 148 9 0 chr3 159072776 159072884 -58964274 - AluSg/x SINE Alu -24 288 180 617 215 26 52 chr3 159073673 159073864 -58963294 - L1MC5 LINE L1 -44 7917 7732 239 301 62 44 chr3 159074275 159074388 -58962770 + MIR SINE MIR 117 231 -31 21 57 0 0 chr3 159074483 159074518 -58962640 + AT_rich Low_complexity Low_complexity 1 35 0 416 187 13 0 chr3 159075007 159075082 -58962076 + MADE1 DNA Mariner 1 76 -4 21 0 0 0 chr3 159075577 159075598 -58961560 + AT_rich Low_complexity Low_complexity 1 21 0 216 305 92 43 chr3 159075645 159075809 -58961349 - MIR SINE MIR -78 184 13 6151 142 40 10 chr3 159076104 159077788 -58959370 + L1MA2 LINE L1 4573 6304 0 694 290 121 31 chr3 159077846 159078031 -58959127 + L1MEc LINE L1 1025 1192 -5023 248 0 31 0 chr3 159078031 159078063 -58959095 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 694 290 121 31 chr3 159078063 159079406 -58957752 + L1MEc LINE L1 1192 2665 -3550 2750 153 56 6 chr3 159079519 159080034 -58957124 + L1MC3 LINE L1 6137 6334 -10 251 277 96 97 chr3 159080157 159080343 -58956815 + MIR SINE MIR 2 187 -66 22 0 0 0 chr3 159080589 159080611 -58956547 + AT_rich Low_complexity Low_complexity 1 22 0 234 316 13 0 chr3 159081352 159081428 -58955730 - MIR SINE MIR -164 98 22 27 0 0 0 chr3 159081713 159081740 -58955418 + AT_rich Low_complexity Low_complexity 1 27 0 1903 146 50 16 chr3 159082595 159082958 -58954200 + THE1C LTR MaLR 1 375 0 367 310 101 6 chr3 159083046 159083204 -58953954 - MIR3 SINE MIR -1 207 35 658 242 96 7 chr3 159083401 159083670 -58953488 + MLT1A2 LTR MaLR 4 371 -3 339 212 0 0 chr3 159083706 159083772 -58953386 - AluJ/monomer SINE Alu -2 299 234 26 0 0 0 chr3 159086576 159086602 -58950556 + AT_rich Low_complexity Low_complexity 1 26 0 6992 155 4 17 chr3 159087036 159087065 -58950093 + L1P LINE L1 4136 4164 -1982 4979 115 19 3 chr3 159087065 159087820 -58949338 - L1PA11 LINE L1 0 6174 5408 6992 155 4 17 chr3 159087820 159089059 -58948099 + L1PA11 LINE L1 4164 5387 -759 255 253 61 10 chr3 159090343 159090442 -58946716 + (TATATG)n Simple_repeat Simple_repeat 5 108 0 206 167 48 0 chr3 159090460 159090544 -58946614 + (TA)n Simple_repeat Simple_repeat 2 89 0 230 193 17 17 chr3 159092844 159092963 -58944195 + (TA)n Simple_repeat Simple_repeat 1 119 0 29 28 0 0 chr3 159093513 159093549 -58943609 + AT_rich Low_complexity Low_complexity 1 36 0 415 296 153 37 chr3 159093648 159093811 -58943347 + MIR SINE MIR 20 209 -53 1883 160 128 8 chr3 159093811 159094193 -58942965 + MSTA LTR MaLR 1 428 0 415 296 153 37 chr3 159094193 159094218 -58942940 + MIR SINE MIR 209 230 -32 1407 200 64 37 chr3 159095278 159095653 -58941505 - MLT1B LTR MaLR -5 385 1 198 0 0 0 chr3 159096527 159096549 -58940609 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 685 282 69 28 chr3 159096948 159097239 -58939919 + MLT1K LTR MaLR 282 584 -4 627 173 13 13 chr3 159098251 159098401 -58938757 + GA-rich Low_complexity Low_complexity 3 152 0 368 248 15 6 chr3 159098685 159099023 -58938135 + (TA)n Simple_repeat Simple_repeat 1 341 0 22 0 0 0 chr3 159101180 159101202 -58935956 + AT_rich Low_complexity Low_complexity 1 22 0 433 301 38 0 chr3 159101353 159101486 -58935672 + L2 LINE L2 2675 2812 -502 1422 244 45 5 chr3 159102684 159103065 -58934093 - MSTD LTR MaLR 0 396 1 204 125 0 0 chr3 159103510 159103542 -58933616 + (T)n Simple_repeat Simple_repeat 1 32 0 252 280 57 90 chr3 159103545 159103756 -58933402 + MLT1K LTR MaLR 265 468 -120 23 33 0 0 chr3 159104075 159104105 -58933053 + AT_rich Low_complexity Low_complexity 1 30 0 2034 115 38 0 chr3 159105106 159105228 -58931930 + AluSx SINE Alu 1 117 -195 186 71 0 0 chr3 159105228 159105256 -58931902 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 2034 115 38 0 chr3 159105256 159105421 -58931737 + AluSx SINE Alu 117 299 -13 288 293 172 17 chr3 159107128 159107244 -58929914 - L2 LINE L2 0 3313 3180 945 97 49 0 chr3 159107512 159107656 -58929502 + AluSc SINE Alu 154 304 -5 36 62 0 0 chr3 159108655 159108719 -58928439 + AT_rich Low_complexity Low_complexity 1 64 0 222 222 19 0 chr3 159108886 159108940 -58928218 + MIR SINE MIR 84 138 -124 271 211 19 0 chr3 159108947 159108999 -58928159 - L1MEd LINE L1 -5506 613 561 213 39 0 0 chr3 159109391 159109417 -58927741 + (CA)n Simple_repeat Simple_repeat 2 27 0 207 100 0 0 chr3 159109844 159109874 -58927284 + (TG)n Simple_repeat Simple_repeat 2 31 0 189 196 0 0 chr3 159109946 159109992 -58927166 + (CATA)n Simple_repeat Simple_repeat 3 48 0 30 27 0 0 chr3 159110208 159110245 -58926913 + AT_rich Low_complexity Low_complexity 1 37 0 202 300 17 17 chr3 159110316 159110436 -58926722 + (TA)n Simple_repeat Simple_repeat 2 121 0 1935 199 82 50 chr3 159111992 159112529 -58924629 + MLT2B3 LTR ERVL 1 554 0 27 49 0 0 chr3 159113357 159113398 -58923760 + AT_rich Low_complexity Low_complexity 1 41 0 369 273 61 45 chr3 159113785 159113917 -58923241 - L2 LINE L2 -2 3270 3137 2232 113 3 3 chr3 159114111 159114420 -58922738 - AluSg SINE Alu -1 309 1 384 315 109 33 chr3 159114533 159114717 -58922441 - MIR SINE MIR -64 198 1 232 342 20 13 chr3 159117751 159117900 -58919258 + L2 LINE L2 2861 3010 -262 567 265 16 42 chr3 159118061 159118250 -58918908 + MIR SINE MIR 79 262 0 685 285 36 51 chr3 159118494 159118747 -58918411 + MIR SINE MIR 1 249 -13 585 272 51 63 chr3 159119209 159119463 -58917695 + MIR SINE MIR 2 252 -10 348 289 78 8 chr3 159119758 159119886 -58917272 + MER69 DNA AcHobo 12 148 -2378 2144 110 10 0 chr3 159121245 159121546 -58915612 + AluSg SINE Alu 1 304 -6 1373 226 110 53 chr3 159121569 159122061 -58915097 + MLT2B1 LTR ERVL 1 520 0 27 49 0 0 chr3 159122530 159122571 -58914587 + AT_rich Low_complexity Low_complexity 1 41 0 275 160 38 47 chr3 159122596 159122702 -58914456 + (TTATA)n Simple_repeat Simple_repeat 5 109 0 226 253 67 0 chr3 159122733 159122808 -58914350 + L1 LINE L1 987 1066 -5783 240 35 0 0 chr3 159123121 159123150 -58914008 + (CA)n Simple_repeat Simple_repeat 2 30 0 7454 230 42 14 chr3 159123153 159125657 -58911501 + L1PA15-16 LINE L1 1263 3855 -2994 909 126 0 0 chr3 159125664 159125791 -58911367 + AluSx SINE Alu 1 127 -186 3975 37 17 0 chr3 159125802 159126285 -58910873 - L1PA5 LINE L1 -7 6147 5657 1256 111 17 17 chr3 159126305 159126485 -58910673 + AluSx SINE Alu 121 300 -12 6566 218 27 26 chr3 159126517 159127631 -58909527 + L1 LINE L1 3882 5000 -1848 1995 118 28 3 chr3 159127631 159127919 -58909239 - AluSx SINE Alu -12 300 6 6566 218 27 26 chr3 159127919 159128514 -58908644 + L1 LINE L1 5000 5593 -1255 1907 179 108 3 chr3 159128520 159128901 -58908257 + MSTB LTR MaLR 6 426 0 4699 132 60 27 chr3 159128901 159130139 -58907019 + L1PA16 LINE L1 4888 6164 -2 28 29 0 0 chr3 159130160 159130195 -58906963 + AT_rich Low_complexity Low_complexity 1 35 0 367 157 65 20 chr3 159130219 159130372 -58906786 + (TTATA)n Simple_repeat Simple_repeat 1 160 0 359 291 73 86 chr3 159130602 159130836 -58906322 + L2 LINE L2 3045 3275 -38 360 0 0 0 chr3 159130841 159130881 -58906277 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 253 150 0 0 chr3 159131190 159131230 -58905928 + MSTB2 LTR MaLR 418 457 0 25 0 0 0 chr3 159131550 159131575 -58905583 + AT_rich Low_complexity Low_complexity 1 25 0 342 0 0 0 chr3 159131898 159131936 -58905222 + (TG)n Simple_repeat Simple_repeat 2 39 0 285 179 0 0 chr3 159132032 159132088 -58905070 - MLT2B1 LTR ERVL 0 520 465 237 172 0 138 chr3 159132112 159132199 -58904959 - MLT2B1 LTR ERVL -11 509 435 1824 234 93 5 chr3 159132199 159132630 -58904528 - MLT2B1 LTR ERVL -50 470 2 2956 130 50 100 chr3 159132665 159133267 -58903891 + LTR19B LTR ERV1 1 572 -8 2466 70 3 0 chr3 159133267 159133567 -58903591 - AluY SINE Alu -10 301 1 313 310 69 7 chr3 159133680 159133825 -58903333 - L2 LINE L2 0 3313 3160 1946 152 18 18 chr3 159134031 159134366 -58902792 - MER2 DNA MER2_type -10 335 1 215 160 40 0 chr3 159134367 159134417 -58902741 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 254 258 11 43 chr3 159134417 159134510 -58902648 + L1MC4 LINE L1 6614 6703 -1339 1511 221 123 68 chr3 159134807 159135400 -58901758 - MLT1E2 LTR MaLR 0 626 1 384 282 41 67 chr3 159135913 159136048 -58901110 + MER5A DNA MER1_type 11 134 -44 * 743 214 12 64 chr3 159136047 159136220 -58900938 + MER5A DNA MER1_type 26 189 0 658 282 24 0 chr3 159136229 159136399 -58900759 + MER5B DNA MER1_type 2 175 -3 218 291 209 0 chr3 159136434 159136520 -58900638 - MER5B DNA MER1_type 0 178 75 440 254 32 32 chr3 159136555 159136740 -58900418 - L1ME1 LINE L1 -20 6146 5962 * 480 257 87 19 chr3 159136737 159137067 -58900091 - L1MCc LINE L1 -4887 1536 1346 355 109 0 16 chr3 159137076 159137140 -58900018 + LTR24C LTR ERV1 1 63 -572 * 2258 118 113 19 chr3 159137117 159137533 -58899625 + LTR24C LTR ERV1 174 628 -7 2111 128 33 28 chr3 159137593 159137953 -58899205 + Tigger2a DNA MER2_type 1 362 -72 1091 258 61 71 chr3 159137969 159138115 -58899043 - L1MCc LINE L1 -5136 1287 1141 3248 225 80 37 chr3 159138115 159138943 -58898215 + MER21B LTR ERV1 1 863 0 1091 258 61 71 chr3 159138943 159139273 -58897885 - L1MCc LINE L1 -5282 1141 816 417 312 99 31 chr3 159139445 159139890 -58897268 - L1MCc LINE L1 -5924 499 25 247 281 0 0 chr3 159139891 159139955 -58897203 + MER5B DNA MER1_type 112 175 -3 2245 118 0 3 chr3 159140696 159141009 -58896149 + AluSx SINE Alu 1 312 0 264 111 0 0 chr3 159141339 159141384 -58895774 + (CA)n Simple_repeat Simple_repeat 2 46 0 23 0 0 0 chr3 159142123 159142146 -58895012 + AT_rich Low_complexity Low_complexity 1 23 0 316 211 95 42 chr3 159142465 159142560 -58894598 - MER63 DNA MER1_type -310 752 27 25 0 0 0 chr3 159143888 159143913 -58893245 + AT_rich Low_complexity Low_complexity 1 25 0 1314 252 87 25 chr3 159144368 159144769 -58892389 + L1MB8 LINE L1 2 427 -6115 1050 183 31 0 chr3 159144854 159145083 -58892075 + L1MB2 LINE L1 5936 6171 0 2064 232 34 11 chr3 159145113 159145729 -58891429 + L1MB8 LINE L1 5111 5740 -904 1971 87 26 4 chr3 159145877 159146142 -58891016 + AluSc SINE Alu 23 293 -16 735 211 44 39 chr3 159146170 159146374 -58890784 - L1MB8 LINE L1 -21 6157 5953 3945 180 44 18 chr3 159146396 159147305 -58889853 + L1MB8 LINE L1 5735 6655 -21 319 325 72 57 chr3 159147720 159147854 -58889304 + L1M4 LINE L1 4734 4864 -1282 1662 66 99 105 chr3 159147854 159147993 -58889165 + AluY SINE Alu 1 139 -172 2437 64 0 13 chr3 159147993 159148306 -58888852 + AluY SINE Alu 1 309 -2 1662 66 99 105 chr3 159148306 159148470 -58888688 + AluY SINE Alu 139 302 -9 319 325 72 57 chr3 159148470 159148600 -58888558 + L1M4 LINE L1 4864 5002 -1144 22 70 0 0 chr3 159148601 159148644 -58888514 + AT_rich Low_complexity Low_complexity 1 43 0 23 68 0 0 chr3 159148875 159148919 -58888239 + AT_rich Low_complexity Low_complexity 1 44 0 737 154 0 15 chr3 159149002 159149138 -58888020 - L1PA15 LINE L1 -7 6158 6025 618 164 78 16 chr3 159149138 159149266 -58887892 + THE1C LTR MaLR 3 138 -237 5698 108 40 0 chr3 159149283 159150346 -58886812 + L1PA13 LINE L1 5062 6159 -4 3548 193 19 18 chr3 159150362 159151140 -58886018 - L1MB7 LINE L1 -16 6168 5390 1304 248 70 31 chr3 159151138 159151727 -58885431 - L1MB7 LINE L1 -2790 3356 2745 * 234 0 0 0 chr3 159151808 159151834 -58885324 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1890 189 68 34 chr3 159151846 159152290 -58884868 - LTR2B LTR ERV1 0 490 32 23 33 0 0 chr3 159152310 159152340 -58884818 + AT_rich Low_complexity Low_complexity 1 30 0 1060 264 69 31 chr3 159153112 159153461 -58883697 - MLT1I LTR MaLR -9 400 39 1616 246 105 7 chr3 159153465 159154009 -58883149 + L1ME2 LINE L1 5542 6138 -26 25 0 0 0 chr3 159154145 159154170 -58882988 + AT_rich Low_complexity Low_complexity 1 25 0 756 117 9 1 chr3 159154179 159154335 -58882823 + L1MA1 LINE L1 5779 5937 -226 243 274 0 0 chr3 159154748 159154799 -58882359 + MIR SINE MIR 206 256 -6 375 274 5 19 chr3 159154840 159155266 -58881892 + CT-rich Low_complexity Low_complexity 1 420 0 24 100 0 0 chr3 159155463 159155543 -58881615 + AT_rich Low_complexity Low_complexity 1 80 0 2411 237 88 32 chr3 159155856 159155943 -58881215 - L1MC4 LINE L1 -357 7531 7450 5773 56 43 5 chr3 159155943 159156693 -58880465 + LTR17 LTR ERV1 1 778 -2 2411 237 88 32 chr3 159156693 159157173 -58879985 - L1MC4 LINE L1 -438 7450 6998 5170 60 40 1 chr3 159157173 159157868 -58879290 + LTR30 LTR ERV1 1 722 0 2411 237 88 32 chr3 159157868 159158176 -58878982 - L1MC4 LINE L1 -890 6998 6538 2189 111 19 0 chr3 159158176 159158483 -58878675 - AluSq SINE Alu 0 313 1 2411 237 88 32 chr3 159158483 159158587 -58878571 - L1MC4 LINE L1 -1350 6538 6441 518 299 137 38 chr3 159158845 159159239 -58877919 - LTR16B LTR ERVL 0 464 32 202 244 22 0 chr3 159160255 159160300 -58876858 - L2 LINE L2 -7 3306 3261 1209 213 53 10 chr3 159160308 159160608 -58876550 + MER33 DNA MER1_type 3 315 -9 338 298 182 18 chr3 159160630 159160855 -58876303 + MLT1I LTR MaLR 1 262 -147 2816 197 143 83 chr3 159161000 159161214 -58875944 + L1MC3 LINE L1 6703 6903 -882 180 77 0 0 chr3 159161214 159161240 -58875918 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 2816 197 143 83 chr3 159161240 159161380 -58875778 + L1MC3 LINE L1 6903 7033 -752 320 243 71 0 chr3 159161380 159161450 -58875708 + MLT1F1 LTR MaLR 37 111 -456 2816 197 143 83 chr3 159161450 159161632 -58875526 + L1MC3 LINE L1 7033 7203 -582 2241 138 28 19 chr3 159161632 159161993 -58875165 + THE1B LTR MaLR 1 364 0 2816 197 143 83 chr3 159161993 159162400 -58874758 + L1MC3 LINE L1 7203 7778 -7 227 121 0 0 chr3 159162952 159162985 -58874173 - U2 snRNA snRNA -155 33 1 2606 52 3 0 chr3 159164568 159164903 -58872255 - AluY SINE Alu 0 340 5 340 310 65 26 chr3 159164920 159165075 -58872083 + MIR SINE MIR 102 262 0 29 0 0 0 chr3 159165322 159165351 -58871807 + AT_rich Low_complexity Low_complexity 1 29 0 2108 97 0 0 chr3 159165529 159165788 -58871370 + AluSg SINE Alu 3 261 -49 334 264 68 55 chr3 159167154 159167317 -58869841 + MIR SINE MIR 90 254 -8 233 150 0 0 chr3 159168165 159168205 -58868953 - MIR SINE MIR -38 224 185 198 0 0 0 chr3 159168206 159168228 -58868930 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 15072 157 44 5 chr3 159168234 159171698 -58865460 - L1PA8 LINE L1 -21 6151 2550 438 284 5 119 chr3 159171707 159171908 -58865250 - MIR SINE MIR -72 190 13 261 0 0 0 chr3 159172871 159172900 -58864258 + (CA)n Simple_repeat Simple_repeat 2 30 0 447 317 60 0 chr3 159173646 159173829 -58863329 - MER102b DNA MER1_type -4 337 144 183 80 0 0 chr3 159173864 159173889 -58863269 + (GGAA)n Simple_repeat Simple_repeat 2 26 0 423 238 24 56 chr3 159173937 159174063 -58863095 - MIR3 SINE MIR -54 154 33 6702 133 44 19 chr3 159174695 159174774 -58862384 + Tigger3b DNA MER2_type 1 77 -2951 2120 96 14 0 chr3 159174774 159175066 -58862092 + AluSg SINE Alu 1 296 -14 6702 133 44 19 chr3 159175066 159176187 -58860971 + Tigger3b DNA MER2_type 77 1231 0 2300 115 0 3 chr3 159177074 159177387 -58859771 - AluSx SINE Alu 0 312 1 660 309 148 43 chr3 159177615 159178175 -58858983 + L2 LINE L2 2178 2796 -518 230 272 65 43 chr3 159178249 159178341 -58858817 + L2 LINE L2 2969 3062 -210 1046 289 105 40 chr3 159178405 159179244 -58857914 - L2 LINE L2 -1 3312 2411 11444 139 38 20 chr3 159179245 159181228 -58855930 - Tigger7 DNA MER2_type -1 2486 468 2247 136 28 19 chr3 159181228 159181589 -58855569 - THE1B LTR MaLR 0 364 1 11186 109 3 9 chr3 159181589 159183179 -58853979 - THE1B-int LTR MaLR 0 1580 1 2253 130 28 19 chr3 159183179 159183540 -58853618 - THE1B LTR MaLR 0 364 1 2220 213 25 36 chr3 159183541 159184016 -58853142 - Tigger7 DNA MER2_type -263 470 1 492 288 14 7 chr3 159184021 159184160 -58852998 - L2 LINE L2 -906 2408 2269 1757 169 130 16 chr3 159184179 159184563 -58852595 - MSTA LTR MaLR 0 428 1 7505 152 143 10 chr3 159184563 159185956 -58851202 - MSTA-int LTR MaLR 0 1580 3 1853 127 150 44 chr3 159185958 159186167 -58850991 - MSTA LTR MaLR 0 428 243 2014 99 7 11 chr3 159186167 159186491 -58850667 - AluSp SINE Alu 0 324 2 1853 127 150 44 chr3 159186491 159186667 -58850491 - MSTA LTR MaLR -185 243 1 326 202 21 64 chr3 159186717 159186811 -58850347 + L2 LINE L2 3221 3310 -3 225 250 64 93 chr3 159187295 159187435 -58849723 + Charlie8 DNA MER1_type 120 255 -2162 2861 233 61 52 chr3 159187548 159187867 -58849291 + L1ME2 LINE L1 4958 5272 -892 1563 209 42 0 chr3 159187867 159188197 -58848961 - MER2 DNA MER2_type 0 344 1 2861 233 61 52 chr3 159188197 159189065 -58848093 + L1ME2 LINE L1 5272 6156 -8 182 105 26 0 chr3 159189577 159189615 -58847543 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 213 39 0 0 chr3 159189616 159189642 -58847516 + (TTG)n Simple_repeat Simple_repeat 2 27 0 21 57 0 0 chr3 159189901 159189936 -58847222 + AT_rich Low_complexity Low_complexity 1 35 0 511 216 0 0 chr3 159191723 159191820 -58845338 - MER103 DNA DNA -49 117 21 263 316 49 67 chr3 159192128 159192353 -58844805 + L1MDa LINE L1 70 290 -6250 2121 223 83 55 chr3 159192926 159193945 -58843213 + L1MDa LINE L1 907 1911 -4629 6496 155 19 7 chr3 159193955 159196079 -58841079 + L1MA3 LINE L1 4151 6304 -1 6443 64 13 6 chr3 159196308 159197807 -58839351 - L1PA8 LINE L1 -14 6158 4510 22 35 0 0 chr3 159198292 159198321 -58838837 + AT_rich Low_complexity Low_complexity 1 29 0 309 287 93 13 chr3 159198507 159198657 -58838501 - L1MC4a LINE L1 -1925 5883 5722 427 353 62 30 chr3 159199137 159199537 -58837621 - L1MC4a LINE L1 -1071 5075 4663 2064 219 92 23 chr3 159201655 159202254 -58834904 + MER21B LTR ERV1 13 652 -211 1709 239 96 5 chr3 159202482 159202897 -58834261 - MLT2B1 LTR ERVL -66 454 2 2694 131 58 98 chr3 159202932 159203533 -58833625 + LTR19B LTR ERV1 1 577 -3 851 197 71 7 chr3 159203533 159203802 -58833356 - AluY SINE Alu -18 293 8 7142 48 9 5 chr3 159204069 159205038 -58832120 - L1PA3 LINE L1 -3 6152 5186 25 51 0 0 chr3 159205306 159205345 -58831813 + GC_rich Low_complexity Low_complexity 1 39 0 207 100 0 0 chr3 159205664 159205694 -58831464 + (CA)n Simple_repeat Simple_repeat 2 31 0 213 39 0 0 chr3 159206121 159206147 -58831011 + (TG)n Simple_repeat Simple_repeat 2 27 0 275 211 19 0 chr3 159206538 159206590 -58830568 + L1MEd LINE L1 972 1024 -5506 196 196 22 0 chr3 159206606 159206652 -58830506 - MIR SINE MIR -132 130 84 21 43 0 0 chr3 159206837 159206860 -58830298 + AT_rich Low_complexity Low_complexity 1 23 0 4501 129 29 7 chr3 159208715 159209465 -58827693 - L1PA11 LINE L1 0 6174 5408 3067 182 18 23 chr3 159209816 159210502 -58826656 + L1P LINE L1 4548 5229 -917 2001 287 31 116 chr3 159210913 159211354 -58825804 + L1P LINE L1 3867 4344 -1802 910 219 42 21 chr3 159211354 159211641 -58825517 - AluSx SINE Alu -5 297 5 2001 287 31 116 chr3 159211641 159212326 -58824832 + L1P LINE L1 4344 4897 -1249 916 205 135 4 chr3 159212326 159212585 -58824573 + MSTB LTR MaLR 6 298 -128 448 303 121 17 chr3 159214549 159214846 -58822312 + L1MEd LINE L1 1911 2238 -4302 302 211 129 94 chr3 159214857 159215028 -58822130 + L1MEd LINE L1 2305 2481 -4059 1486 247 61 23 chr3 159215031 159215509 -58821649 + L1ME1 LINE L1 5606 6101 -65 2264 118 3 0 chr3 159215706 159216012 -58821146 - AluSc SINE Alu 0 309 3 729 276 16 71 chr3 159216095 159216349 -58820809 + MLT1H LTR MaLR 51 290 -259 693 229 29 29 chr3 159217938 159218108 -58819050 - MER5B DNA MER1_type -8 170 1 534 311 181 20 chr3 159218119 159218511 -58818647 + L3 LINE CR1 948 1402 -175 625 262 24 12 chr3 159219009 159219177 -58817981 - MER5B DNA MER1_type -7 171 2 523 339 96 62 chr3 159219354 159219905 -58817253 + L3 LINE CR1 625 1194 -383 219 313 28 97 chr3 159220257 159220401 -58816757 + L3 LINE CR1 1443 1576 -1 364 301 59 20 chr3 159220523 159220676 -58816482 - MLT1J2 LTR MaLR 0 450 292 299 291 154 0 chr3 159222168 159222278 -58814880 - L2 LINE L2 -5 3267 3141 848 243 133 56 chr3 159222359 159222862 -58814296 - MLT1F LTR MaLR 0 542 1 2459 122 0 25 chr3 159224422 159224823 -58812335 - L1M1 LINE L1 -535 5769 5379 186 133 0 0 chr3 159225676 159225706 -58811452 + (CA)n Simple_repeat Simple_repeat 2 31 0 2198 178 39 12 chr3 159226045 159226461 -58810697 + Tigger2a DNA MER2_type 8 434 0 334 320 21 0 chr3 159227150 159227247 -58809911 + L2 LINE L2 3173 3271 -1 27 0 0 0 chr3 159227478 159227505 -58809653 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr3 159227848 159227877 -58809281 + AT_rich Low_complexity Low_complexity 1 29 0 622 174 37 37 chr3 159230738 159230899 -58806259 + HsTC2 DNA Tc2 1726 1886 -12 387 164 0 0 chr3 159231663 159231724 -58805434 - Tigger5 DNA MER2_type 0 2323 2263 262 226 0 0 chr3 159231742 159231795 -58805363 - Tigger5 DNA MER2_type -2268 55 3 216 97 0 0 chr3 159233522 159233553 -58803605 + (A)n Simple_repeat Simple_repeat 1 31 0 21 57 0 0 chr3 159233945 159233980 -58803178 + AT_rich Low_complexity Low_complexity 1 35 0 4649 122 26 7 chr3 159233990 159234706 -58802452 - L1PA16 LINE L1 -21 6145 5416 28 48 0 0 chr3 159235851 159235893 -58801265 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr3 159236699 159236722 -58800436 + AT_rich Low_complexity Low_complexity 1 23 0 796 250 50 0 chr3 159237658 159237858 -58799300 - MER63A DNA MER1_type 0 210 1 1295 167 134 23 chr3 159238177 159238482 -58798676 - MER44D DNA MER2_type 0 609 1 222 37 0 0 chr3 159238546 159238573 -58798585 + (CA)n Simple_repeat Simple_repeat 2 28 0 25 0 0 0 chr3 159239935 159239960 -58797198 + AT_rich Low_complexity Low_complexity 1 25 0 204 267 0 0 chr3 159240302 159240347 -58796811 + L2 LINE L2 3261 3305 -8 2256 97 0 13 chr3 159240645 159240954 -58796204 + AluSg SINE Alu 1 305 -5 2526 68 0 0 chr3 159241606 159241915 -58795243 - AluY SINE Alu -2 309 1 30 69 0 0 chr3 159242012 159242070 -58795088 + AT_rich Low_complexity Low_complexity 1 58 0 336 238 60 0 chr3 159242525 159242609 -58794549 + MIR SINE MIR 172 260 -2 198 0 0 0 chr3 159243602 159243624 -58793534 + (CATA)n Simple_repeat Simple_repeat 1 22 0 229 271 141 12 chr3 159244229 159244314 -58792844 + L2 LINE L2 3175 3270 -2 34 0 0 0 chr3 159244782 159244816 -58792342 + AT_rich Low_complexity Low_complexity 1 34 0 370 184 0 26 chr3 159246357 159246433 -58790725 + MER116 DNA Mariner 1 74 -6 273 258 141 23 chr3 159247890 159248018 -58789140 - MIR SINE MIR -71 191 49 229 192 41 14 chr3 159248101 159248174 -58788984 + (TATATG)n Simple_repeat Simple_repeat 6 80 0 890 254 22 18 chr3 159249218 159249446 -58787712 + MIR SINE MIR 9 237 -25 6944 90 22 3 chr3 159252437 159253887 -58783271 + L1PA8 LINE L1 4305 5787 -385 6569 70 16 39 chr3 159253889 159255871 -58781287 + SVA Other Other 1 1386 0 2761 86 3 5 chr3 159255871 159256255 -58780903 + L1PA8 LINE L1 5777 6159 -13 23 78 0 0 chr3 159256445 159256496 -58780662 + AT_rich Low_complexity Low_complexity 1 51 0 22 70 0 0 chr3 159256618 159256661 -58780497 + AT_rich Low_complexity Low_complexity 1 43 0 1461 126 79 65 chr3 159257444 159257722 -58779436 - AluSx SINE Alu -25 287 6 1899 125 20 3 chr3 159257915 159258212 -58778946 - AluSq SINE Alu -11 302 1 373 317 35 7 chr3 159258309 159258451 -58778707 - L2 LINE L2 -7 3306 3161 191 353 48 24 chr3 159259176 159259343 -58777815 - L2 LINE L2 -1021 2293 2123 24 0 0 0 chr3 159259392 159259416 -58777742 + AT_rich Low_complexity Low_complexity 1 24 0 233 284 149 77 chr3 159259416 159259951 -58777207 - L2 LINE L2 -1219 2095 1522 252 130 0 0 chr3 159260926 159260972 -58776186 + (TG)n Simple_repeat Simple_repeat 2 47 0 408 311 117 0 chr3 159261177 159261357 -58775801 + MIR SINE MIR 57 257 -5 899 171 43 6 chr3 159261492 159261656 -58775502 - FRAM SINE Alu -13 163 1 31 68 0 0 chr3 159261715 159261774 -58775384 + AT_rich Low_complexity Low_complexity 1 59 0 378 0 0 0 chr3 159261858 159261900 -58775258 + (CA)n Simple_repeat Simple_repeat 2 43 0 293 350 79 41 chr3 159262785 159263076 -58774082 + MLT1J LTR MaLR 9 310 -201 21 57 0 0 chr3 159264149 159264184 -58772974 + AT_rich Low_complexity Low_complexity 1 35 0 2081 132 0 22 chr3 159264284 159264602 -58772556 - AluSx SINE Alu 0 312 2 1572 114 0 30 chr3 159264814 159265051 -58772107 - AluSq SINE Alu -82 231 2 1479 205 3 13 chr3 159265288 159265591 -58771567 - AluJb SINE Alu -12 300 1 181 345 26 26 chr3 159267148 159267264 -58769894 + MIR SINE MIR 97 212 -50 27 0 0 0 chr3 159268168 159268195 -58768963 + AT_rich Low_complexity Low_complexity 1 27 0 453 330 110 18 chr3 159268419 159268646 -58768512 + MIR SINE MIR 1 248 -14 21 0 0 0 chr3 159268950 159268971 -58768187 + AT_rich Low_complexity Low_complexity 1 21 0 4300 81 2 20 chr3 159269189 159269679 -58767479 + L1PA8 LINE L1 5575 6053 -119 2327 100 0 0 chr3 159269679 159269978 -58767180 + AluSc SINE Alu 1 299 -10 4300 81 2 20 chr3 159269978 159270093 -58767065 + L1PA8 LINE L1 6053 6169 -3 6283 84 48 2 chr3 159270534 159271439 -58765719 + MER11B LTR ERVK 1 1075 -161 289 116 23 0 chr3 159271465 159271508 -58765650 + MSTA LTR MaLR 385 428 0 432 242 11 0 chr3 159271690 159271781 -58765377 + LTR16A LTR ERVL 357 448 -2 871 246 99 16 chr3 159271815 159272128 -58765030 + HAL1 LINE L1 1688 2026 -481 1225 87 11 16 chr3 159272132 159272317 -58764841 + MER11B LTR ERVK 1053 1236 0 224 357 54 16 chr3 159272517 159272702 -58764456 + L2 LINE L2 2379 2570 -744 228 111 0 0 chr3 159272869 159272905 -58764253 + MER58 DNA MER1_type 2374 2409 -11 * 485 280 17 0 chr3 159272892 159273010 -58764148 - MER58B DNA MER1_type -34 307 188 1319 183 8 12 chr3 159273125 159273377 -58763781 + L1MA4 LINE L1 5680 5930 -370 26 30 0 0 chr3 159273431 159273464 -58763694 + AT_rich Low_complexity Low_complexity 1 33 0 487 230 48 42 chr3 159273597 159273762 -58763396 + L1MB7 LINE L1 6018 6183 -1 215 322 46 11 chr3 159274292 159274379 -58762779 + L2 LINE L2 3209 3298 -15 2214 163 62 7 chr3 159275606 159276012 -58761146 + MSTA LTR MaLR 1 428 0 7551 29 0 0 chr3 159276047 159276997 -58760161 - L1PA4 LINE L1 -4 6151 5202 2450 40 0 0 chr3 159276997 159277297 -58759861 + L1PA4 LINE L1 4918 5217 -929 2087 98 11 3 chr3 159277336 159277622 -58759536 - AluSg1 SINE Alu -21 288 1 25 0 0 0 chr3 159278684 159278709 -58758449 + AT_rich Low_complexity Low_complexity 1 25 0 787 238 0 5 chr3 159279065 159279254 -58757904 - MER5A DNA MER1_type -1 188 1 252 324 81 9 chr3 159279362 159279473 -58757685 + MIR SINE MIR 124 242 -20 213 156 67 0 chr3 159280103 159280148 -58757010 + A-rich Low_complexity Low_complexity 4 51 0 705 148 14 28 chr3 159280441 159280583 -58756575 - L1MA3 LINE L1 -3 6302 6163 1785 164 0 0 chr3 159282066 159282329 -58754829 + AluSx SINE Alu 1 263 -49 898 238 108 49 chr3 159283023 159283570 -58753588 + L1MC5 LINE L1 7272 7850 -111 239 221 211 10 chr3 159283663 159283767 -58753391 - MLT1H LTR MaLR -4 545 421 2694 185 17 11 chr3 159283782 159284311 -58752847 - L1PB4 LINE L1 -3 6153 5622 1480 155 4 14 chr3 159284313 159284591 -58752567 + L1PB4 LINE L1 5343 5617 -539 22 35 0 0 chr3 159284734 159284763 -58752395 + AT_rich Low_complexity Low_complexity 1 29 0 188 204 23 23 chr3 159285130 159285174 -58751984 + L2 LINE L2 3263 3306 -7 261 0 0 0 chr3 159285482 159285511 -58751647 + (T)n Simple_repeat Simple_repeat 1 29 0 786 225 50 25 chr3 159285808 159286008 -58751150 - MER58C DNA MER1_type -1 214 10 411 281 128 12 chr3 159286031 159286195 -58750963 + MIR SINE MIR 26 208 -54 578 298 98 86 chr3 159286430 159287165 -58749993 + L2 LINE L2 2551 3312 -1 246 331 62 8 chr3 159287220 159287338 -58749820 - MIR3 SINE MIR -51 157 52 2882 148 48 56 chr3 159287418 159287985 -58749173 + MER68 LTR ERV1 1 562 0 252 402 31 8 chr3 159288188 159288315 -58748843 - MIR3 SINE MIR -35 173 44 532 274 0 0 chr3 159288776 159288889 -58748269 + MER81 DNA DNA 2 114 0 2290 84 10 3 chr3 159289498 159289795 -58747363 + AluY SINE Alu 1 299 -12 21 0 0 0 chr3 159289820 159289841 -58747317 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr3 159290279 159290320 -58746838 + GC_rich Low_complexity Low_complexity 1 41 0 2232 88 14 3 chr3 159290697 159290993 -58746165 + AluY SINE Alu 1 299 -12 21 0 0 0 chr3 159291018 159291039 -58746119 + AT_rich Low_complexity Low_complexity 1 21 0 555 330 149 50 chr3 159291600 159292124 -58745034 + L3 LINE CR1 910 1485 -92 278 257 53 102 chr3 159293600 159293787 -58743371 - L1MC/D LINE L1 -1996 5812 5635 1718 154 100 9 chr3 159294101 159294354 -58742804 + MER46B DNA MER2_type 1 167 -2564 1398 171 26 108 chr3 159294354 159294733 -58742425 + MER7A DNA MER2_type 1 346 0 1718 154 100 9 chr3 159294733 159294810 -58742348 + MER46B DNA MER2_type 167 236 0 1147 179 0 10 chr3 159295147 159295342 -58741816 - AluSq SINE Alu -114 199 7 424 272 16 60 chr3 159295414 159295598 -58741560 - MER5A DNA MER1_type 0 189 14 572 284 114 71 chr3 159296013 159296577 -58740581 - L2 LINE L2 -4 3309 2716 476 237 0 0 chr3 159296690 159296787 -58740371 - MIR SINE MIR -164 98 2 572 336 80 17 chr3 159296792 159297081 -58740077 - L2 LINE L2 -593 2721 2415 324 326 58 0 chr3 159299340 159299426 -58737732 - L2 LINE L2 -1 3271 3181 249 196 143 0 chr3 159299455 159299511 -58737647 + L2 LINE L2 3245 3308 -5 204 229 0 83 chr3 159299539 159299587 -58737571 - L2 LINE L2 -91 3181 3138 588 320 82 4 chr3 159301188 159301419 -58735739 + L2 LINE L2 2447 2695 -619 246 248 46 119 chr3 159301440 159301549 -58735609 + MER91A DNA MER1_type 1 101 -95 474 313 143 24 chr3 159301588 159302034 -58735124 + L2 LINE L2 2713 3207 -106 692 292 51 24 chr3 159302213 159302583 -58734575 + L1ME4a LINE L1 5522 5901 -220 21 0 0 0 chr3 159303217 159303238 -58733920 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 159304016 159304039 -58733119 + AT_rich Low_complexity Low_complexity 1 23 0 216 143 0 0 chr3 159304323 159304365 -58732793 + (GA)n Simple_repeat Simple_repeat 1 42 0 749 167 52 100 chr3 159305277 159305487 -58731671 - MER20 DNA MER1_type 0 219 20 354 276 51 69 chr3 159305591 159305808 -58731350 - MER102b DNA MER1_type -18 323 111 352 269 60 55 chr3 159305937 159306119 -58731039 + L1MC5 LINE L1 7557 7739 -222 180 0 0 0 chr3 159306119 159306139 -58731019 + (CAGG)n Simple_repeat Simple_repeat 1 20 0 294 29 0 0 chr3 159306139 159306174 -58730984 + (CA)n Simple_repeat Simple_repeat 1 35 0 216 280 0 0 chr3 159307951 159308001 -58729157 + (CATA)n Simple_repeat Simple_repeat 4 53 0 2347 122 3 6 chr3 159308188 159308549 -58728609 + L1PA14 LINE L1 5802 6161 0 1698 142 14 7 chr3 159309021 159309302 -58727856 + AluSp SINE Alu 1 283 -30 241 143 57 71 chr3 159309412 159309552 -58727606 + (CACAC)n Simple_repeat Simple_repeat 3 140 0 395 247 53 53 chr3 159310225 159310375 -58726783 + L3b LINE CR1 1103 1252 -331 24 0 0 0 chr3 159311442 159311466 -58725692 + AT_rich Low_complexity Low_complexity 1 24 0 2140 106 7 3 chr3 159311717 159312010 -58725148 + AluSx SINE Alu 1 294 -18 208 293 143 14 chr3 159312514 159312654 -58724504 + MIR SINE MIR 104 261 -1 1313 215 41 49 chr3 159312832 159313203 -58723955 - MLT1A1 LTR MaLR -2 565 1 3577 155 25 4 chr3 159313335 159314440 -58722718 + L1P5 LINE L1 4571 5701 -450 218 120 53 0 chr3 159314604 159314679 -58722479 + (TA)n Simple_repeat Simple_repeat 1 79 0 28 0 0 0 chr3 159314679 159314707 -58722451 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr3 159315016 159315050 -58722108 + AT_rich Low_complexity Low_complexity 1 34 0 432 149 0 0 chr3 159316091 159316158 -58721000 + MER69 DNA AcHobo 1 67 -2459 271 228 22 11 chr3 159316306 159316398 -58720760 + MER69 DNA AcHobo 2381 2473 -53 22 70 0 0 chr3 159318339 159318382 -58718776 + AT_rich Low_complexity Low_complexity 1 43 0 292 330 37 9 chr3 159318775 159318884 -58718274 + MIR SINE MIR 1 112 -150 444 279 60 55 chr3 159319112 159319313 -58717845 - MLT1L LTR MaLR -346 269 68 1260 294 48 73 chr3 159319459 159319923 -58717235 + MER21B LTR ERV1 20 462 -401 2348 71 0 0 chr3 159319923 159320264 -58716894 - AluY SINE Alu 0 341 1 1260 294 48 73 chr3 159320264 159320511 -58716647 + MER21B LTR ERV1 462 714 -149 290 230 119 24 chr3 159320593 159320719 -58716439 - L1ME4a LINE L1 -5 6116 5979 4780 165 11 1 chr3 159321198 159322017 -58715141 - L1PA15 LINE L1 0 6165 5339 1046 203 21 12 chr3 159322117 159322359 -58714799 - L1PA15 LINE L1 -1734 4412 4169 180 275 25 0 chr3 159322360 159322400 -58714758 + L2 LINE L2 3257 3297 -16 282 295 51 0 chr3 159323191 159323269 -58713889 - MIR SINE MIR -97 165 84 256 285 65 49 chr3 159323568 159323691 -58713467 + L1ME LINE L1 12 136 -5934 22 0 0 0 chr3 159323901 159323923 -58713235 + AT_rich Low_complexity Low_complexity 1 22 0 357 289 128 13 chr3 159325509 159325665 -58711493 - MIR SINE MIR -87 175 2 523 254 110 29 chr3 159327526 159327699 -58709459 - LTR16C LTR ERVL -158 333 147 190 246 217 0 chr3 159327859 159327928 -58709230 + L2 LINE L2 2962 3045 -227 1113 257 72 85 chr3 159328127 159329016 -58708142 - L2 LINE L2 0 3313 2434 443 285 42 0 chr3 159331040 159331184 -58705974 + LTR40c LTR ERVL 89 238 -227 357 291 135 0 chr3 159331211 159331352 -58705806 - MIR SINE MIR -101 161 2 540 236 110 39 chr3 159331420 159331602 -58705556 + LTR40a LTR ERVL 307 501 -18 1373 217 68 18 chr3 159332078 159332461 -58704697 + L1MD2 LINE L1 5785 6186 -173 1869 161 0 20 chr3 159332514 159332812 -58704346 - AluJb SINE Alu -20 292 1 377 212 153 36 chr3 159333024 159333161 -58703997 - MIR SINE MIR -10 252 100 331 311 90 30 chr3 159333189 159333356 -58703802 - MIR SINE MIR -66 196 20 239 351 67 48 chr3 159333396 159333561 -58703597 + MIR3 SINE MIR 20 187 -21 286 233 0 41 chr3 159334857 159334930 -58702228 + MIR SINE MIR 19 88 -120 197 296 14 14 chr3 159335055 159335126 -58702032 + MIR3 SINE MIR 136 206 -2 3575 177 22 6 chr3 159336544 159337216 -58699942 - Tigger1 DNA MER2_type 0 2418 1736 1939 141 61 7 chr3 159337320 159337731 -58699427 - Tigger1 DNA MER2_type -681 1737 1305 * 4543 125 7 22 chr3 159337725 159338460 -58698698 - Tigger1 DNA MER2_type -1313 1105 382 371 326 52 49 chr3 159338772 159338961 -58698197 - MIR SINE MIR -66 142 8 579 132 11 11 chr3 159339583 159339674 -58697484 - Tigger7 DNA MER2_type -1 2586 2496 * 2403 181 50 37 chr3 159339668 159340186 -58696972 - Tigger7 DNA MER2_type -1961 526 2 1847 107 3 30 chr3 159341289 159341587 -58695571 + L1PB1 LINE L1 5859 6148 -3 27 29 0 0 chr3 159341840 159341874 -58695284 + AT_rich Low_complexity Low_complexity 1 34 0 1165 224 103 3 chr3 159342130 159342442 -58694716 + MER2 DNA MER2_type 2 344 0 246 321 18 18 chr3 159342631 159342743 -58694415 + MER5A DNA MER1_type 4 115 -74 194 330 64 43 chr3 159342661 159342755 -58694403 - MER5A DNA MER1_type -21 168 73 * 4083 249 48 88 chr3 159342782 159344601 -58692557 - L1MB7 LINE L1 -51 6133 4242 921 173 5 60 chr3 159344601 159344786 -58692372 - FRAM SINE Alu -2 174 1 4083 249 48 88 chr3 159344786 159345497 -58691661 - L1MB7 LINE L1 -1942 4242 3553 1923 133 34 3 chr3 159345497 159345791 -58691367 - AluSx SINE Alu -9 303 1 4083 249 48 88 chr3 159345791 159345962 -58691196 - L1MB7 LINE L1 -2631 3553 3377 1795 200 129 64 chr3 159346101 159346140 -58691018 - L1MB7 LINE L1 -3071 3075 3040 2512 16 13 13 chr3 159346140 159346443 -58690715 - AluYa5 SINE Alu -8 303 1 1795 200 129 64 chr3 159346443 159347094 -58690064 - L1MB7 LINE L1 -3106 3040 2340 25 65 0 0 chr3 159347173 159347219 -58689939 + AT_rich Low_complexity Low_complexity 1 46 0 1927 131 11 3 chr3 159347969 159348274 -58688884 + AluSx SINE Alu 1 307 0 713 289 23 12 chr3 159348470 159348726 -58688432 - MIR SINE MIR -1 261 3 194 341 37 37 chr3 159349039 159349174 -58687984 - L2 LINE L2 0 3313 3179 48 18 0 0 chr3 159350631 159350686 -58686472 + AT_rich Low_complexity Low_complexity 1 55 0 195 42 0 0 chr3 159350832 159350856 -58686302 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr3 159351689 159351713 -58685445 + AT_rich Low_complexity Low_complexity 1 24 0 469 274 7 100 chr3 159352202 159352472 -58684686 + L1MDb LINE L1 769 1013 -5396 2616 133 34 2 chr3 159352481 159352896 -58684262 + MSTA LTR MaLR 1 428 0 3838 163 38 6 chr3 159352896 159353583 -58683575 + MSTA-int LTR MaLR 1 709 -942 1979 137 60 23 chr3 159353761 159354112 -58683046 + THE1B LTR MaLR 1 364 0 1187 189 41 86 chr3 159354233 159354691 -58682467 + L1MDb LINE L1 2327 2781 -3625 3942 246 102 22 chr3 159354692 159356437 -58680721 + L1MDb LINE L1 2878 4762 -1644 22 56 0 0 chr3 159357324 159357360 -58679798 + AT_rich Low_complexity Low_complexity 1 36 0 751 150 0 31 chr3 159357796 159357923 -58679235 + FRAM SINE Alu 23 145 -31 204 67 0 0 chr3 159357926 159357956 -58679202 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 2218 89 3 19 chr3 159358031 159358344 -58678814 + AluSg1 SINE Alu 1 308 -1 1443 183 82 31 chr3 159358903 159359220 -58677938 - MER58B DNA MER1_type 0 341 9 185 360 50 0 chr3 159359442 159359542 -58677616 + MIR SINE MIR 60 164 -98 819 233 62 0 chr3 159361215 159361408 -58675750 + MER20 DNA MER1_type 1 205 -14 2104 89 3 76 chr3 159361777 159362093 -58675065 + AluSp SINE Alu 1 293 -20 22 0 0 0 chr3 159362300 159362322 -58674836 + AT_rich Low_complexity Low_complexity 1 22 0 185 358 98 35 chr3 159362522 159362695 -58674463 + L2 LINE L2 2906 3089 -183 185 211 18 0 chr3 159364031 159364088 -58673070 + (CATA)n Simple_repeat Simple_repeat 3 60 0 778 298 122 41 chr3 159364356 159365248 -58671910 - L2 LINE L2 -1 3312 2340 410 202 54 0 chr3 159365929 159366097 -58671061 + (TA)n Simple_repeat Simple_repeat 1 177 0 216 0 0 0 chr3 159366102 159366126 -58671032 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 598 335 45 4 chr3 159366254 159366523 -58670635 + L1ME3A LINE L1 5633 5912 -258 1508 104 5 5 chr3 159366523 159366744 -58670414 - pTR5 LTR ERV1 -2046 392 172 1365 171 54 31 chr3 159366848 159367198 -58669960 - pTR5 LTR ERV1 -1340 1098 741 213 167 24 0 chr3 159367673 159367715 -58669443 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 27 29 0 0 chr3 159367764 159367798 -58669360 + AT_rich Low_complexity Low_complexity 1 34 0 315 246 98 33 chr3 159367798 159367920 -58669238 + MER5A DNA MER1_type 53 182 -7 25 31 0 0 chr3 159368011 159368043 -58669115 + AT_rich Low_complexity Low_complexity 1 32 0 569 280 93 27 chr3 159369210 159369435 -58667723 + MIR SINE MIR 23 262 0 260 127 18 0 chr3 159369827 159369882 -58667276 + CT-rich Low_complexity Low_complexity 1 56 0 183 80 0 0 chr3 159369891 159369916 -58667242 + (CA)n Simple_repeat Simple_repeat 2 26 0 1281 253 120 75 chr3 159369920 159370777 -58666381 - HAL1 LINE L1 -285 2222 1327 990 287 92 62 chr3 159370805 159371297 -58665861 - HAL1 LINE L1 -1292 1215 686 2221 112 3 0 chr3 159371297 159371593 -58665565 - AluSx SINE Alu -15 297 1 990 287 92 62 chr3 159371593 159371940 -58665218 - HAL1 LINE L1 -1821 686 351 205 364 92 15 chr3 159372851 159373046 -58664112 - L2 LINE L2 -445 2869 2660 1796 115 0 0 chr3 159373126 159373370 -58663788 + AluSx SINE Alu 62 305 -7 28 0 0 0 chr3 159373646 159373674 -58663484 + AT_rich Low_complexity Low_complexity 1 28 0 2077 176 106 61 chr3 159375540 159376193 -58660965 - Charlie1 DNA MER1_type 0 2761 2080 401 200 0 12 chr3 159376197 159376282 -58660876 - Charlie1 DNA MER1_type -2608 153 70 382 259 254 5 chr3 159376292 159376497 -58660661 + MIR SINE MIR 1 256 -6 1302 224 118 81 chr3 159377041 159377573 -58659585 - MLT1G LTR MaLR 0 555 4 334 290 202 0 chr3 159379000 159379124 -58658034 - L2 LINE L2 -3 3310 3162 3542 126 2 0 chr3 159379128 159379662 -58657496 - L1PB1 LINE L1 0 6151 5617 2146 93 16 0 chr3 159379662 159379983 -58657175 + L1PB1 LINE L1 5284 5609 -542 181 216 59 0 chr3 159380145 159380196 -58656962 - L2 LINE L2 -548 2766 2713 256 270 58 73 chr3 159381526 159381663 -58655495 - MIR SINE MIR -59 203 69 7393 32 0 4 chr3 159382000 159382992 -58654166 - L1PA4 LINE L1 -3 6152 5158 6102 47 0 0 chr3 159382992 159383754 -58653404 + L1PA4 LINE L1 4412 5173 -973 400 104 85 199 chr3 159384256 159384467 -58652691 + MER53 DNA DNA 1 187 -2 254 266 250 0 chr3 159384559 159384687 -58652471 - MER5B DNA MER1_type 0 178 19 459 258 60 33 chr3 159384711 159384862 -58652296 + MER5B DNA MER1_type 1 155 -23 29 47 0 0 chr3 159384961 159385004 -58652154 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr3 159385085 159385113 -58652045 + AT_rich Low_complexity Low_complexity 1 28 0 549 253 99 113 chr3 159385388 159385751 -58651407 - MLT1J LTR MaLR -109 402 45 247 331 66 83 chr3 159387104 159387285 -58649873 + MIR3 SINE MIR 26 203 -5 921 334 45 33 chr3 159387949 159388590 -58648568 + L1MEd LINE L1 4 652 -5467 640 103 28 28 chr3 159388768 159388875 -58648283 - L1 LINE L1 -1361 4785 4679 560 220 81 40 chr3 159388906 159389079 -58648079 + MIR SINE MIR 77 256 -6 256 309 12 0 chr3 159390236 159390317 -58646841 - L2 LINE L2 -1 3312 3231 2249 98 3 0 chr3 159390621 159390917 -58646241 + AluSq SINE Alu 1 297 -16 315 292 51 73 chr3 159390922 159391059 -58646099 + L2 LINE L2 3134 3267 -5 180 318 0 0 chr3 159391134 159391178 -58645980 - L2 LINE L2 -1 3271 3228 236 51 0 26 chr3 159391823 159391862 -58645296 + (TA)n Simple_repeat Simple_repeat 1 38 0 3732 187 72 46 chr3 159392095 159392801 -58644357 + L1MB8 LINE L1 4273 4960 -1218 2222 107 7 0 chr3 159392801 159393100 -58644058 + AluSp SINE Alu 1 301 -12 3732 187 72 46 chr3 159393100 159393217 -58643941 + L1MB8 LINE L1 4960 5073 -1105 180 0 0 0 chr3 159393217 159393237 -58643921 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 3732 187 72 46 chr3 159393237 159393526 -58643632 + L1MB8 LINE L1 5073 5353 -825 1484 200 25 0 chr3 159393526 159393801 -58643357 + AluJo SINE Alu 1 282 -30 3732 187 72 46 chr3 159393801 159394547 -58642611 + L1MB8 LINE L1 5353 6173 -5 1559 279 34 5 chr3 159394553 159395112 -58642046 + L1MEd LINE L1 2298 2872 -3257 943 243 35 72 chr3 159395129 159395503 -58641655 + MER57A LTR ERV1 42 401 -2 423 270 103 17 chr3 159395511 159395685 -58641473 + MER57A-int LTR ERV1 6 194 -7343 520 258 0 15 chr3 159396329 159396436 -58640722 + MER57A-int LTR ERV1 301 407 -4529 517 29 29 0 chr3 159396436 159396505 -58640653 - L1PA6 LINE L1 -4 6150 6080 520 258 0 15 chr3 159396505 159396529 -58640629 + MER57A-int LTR ERV1 407 430 -4506 483 187 22 0 chr3 159396696 159396787 -58640371 + Tigger4(Zombi) DNA MER2_type 2 94 -2637 * 4543 150 36 4 chr3 159396754 159397535 -58639623 + Tigger4(Zombi) DNA MER2_type 1841 2646 -85 2991 160 34 9 chr3 159397535 159398071 -58639087 + Tigger1 DNA MER2_type 1 549 -1869 2037 124 19 3 chr3 159398072 159398394 -58638764 + Tigger1 DNA MER2_type 1505 1831 -587 24 77 0 0 chr3 159398937 159398989 -58638169 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr3 159399526 159399548 -58637610 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 159399703 159399724 -58637434 + AT_rich Low_complexity Low_complexity 1 21 0 626 298 186 11 chr3 159400224 159400747 -58636411 - L1MC4a LINE L1 -1904 5904 5291 25 0 0 0 chr3 159400757 159400782 -58636376 + AT_rich Low_complexity Low_complexity 1 25 0 1710 175 3 3 chr3 159400828 159401120 -58636038 - AluJb SINE Alu -20 292 1 246 32 0 0 chr3 159401675 159401706 -58635452 + (CA)n Simple_repeat Simple_repeat 2 32 0 340 290 89 40 chr3 159401736 159402111 -58635047 - L1ME4a LINE L1 -246 5875 5467 45 69 0 0 chr3 159402790 159402877 -58634281 + AT_rich Low_complexity Low_complexity 1 87 0 2558 45 0 3 chr3 159404655 159404963 -58632195 - AluY SINE Alu -4 307 1 3159 105 60 6 chr3 159405624 159406109 -58631049 + MER9 LTR ERVK 1 511 0 663 266 130 61 chr3 159406376 159406794 -58630364 - L1ME LINE L1 -4249 2012 1624 1450 197 3 32 chr3 159406794 159407078 -58630080 - AluJo SINE Alu -25 287 12 663 266 130 61 chr3 159407078 159407758 -58629400 - L1ME LINE L1 -4637 1624 667 2171 164 24 51 chr3 159407775 159408190 -58628968 + MSTB LTR MaLR 1 404 -22 678 90 70 0 chr3 159408175 159408275 -58628883 + MSTB LTR MaLR 320 426 0 * 198 0 0 0 chr3 159408334 159408356 -58628802 + (T)n Simple_repeat Simple_repeat 1 22 0 1735 212 24 51 chr3 159408719 159409134 -58628024 + MSTB LTR MaLR 1 404 -22 560 133 71 0 chr3 159409119 159409217 -58627941 + MSTB LTR MaLR 320 424 -2 * 189 0 0 0 chr3 159409279 159409300 -58627858 + (T)n Simple_repeat Simple_repeat 1 21 0 428 324 40 78 chr3 159409566 159409912 -58627246 - L1ME LINE L1 -5579 491 159 1984 201 66 5 chr3 159409928 159410320 -58626838 - MSTB LTR MaLR -10 416 1 8379 186 12 49 chr3 159410320 159412031 -58625127 - MSTB-int LTR MaLR 0 1651 5 2329 180 9 40 chr3 159412049 159412477 -58624681 - MSTB LTR MaLR -11 415 1 496 258 15 8 chr3 159412488 159412620 -58624538 - L1ME LINE L1 -5925 145 13 267 365 172 0 chr3 159412635 159412879 -58624279 - L3 LINE CR1 -140 1437 1152 218 105 53 0 chr3 159412964 159413002 -58624156 - L3 LINE CR1 -576 1001 962 645 321 85 28 chr3 159413822 159414174 -58622984 - L3 LINE CR1 -805 772 401 1423 218 91 32 chr3 159414321 159414761 -58622397 + MLT1C LTR MaLR 2 467 0 257 205 218 0 chr3 159415382 159415460 -58621698 - MIR SINE MIR -128 134 40 218 204 0 0 chr3 159416544 159416593 -58620565 + (TA)n Simple_repeat Simple_repeat 2 50 0 639 316 83 36 chr3 159416760 159417121 -58620037 - L2 LINE L2 -19 3294 2917 225 65 0 0 chr3 159417130 159417161 -58619997 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 205 263 53 0 chr3 159418746 159418803 -58618355 + L2 LINE L2 3213 3272 0 21 57 0 0 chr3 159418956 159418991 -58618167 + AT_rich Low_complexity Low_complexity 1 35 0 264 270 169 0 chr3 159419188 159419277 -58617881 + L2 LINE L2 3199 3302 -11 23 0 0 0 chr3 159420467 159420490 -58616668 + AT_rich Low_complexity Low_complexity 1 23 0 1884 161 50 3 chr3 159420955 159421278 -58615880 - MER2 DNA MER2_type 0 345 8 340 284 18 28 chr3 159421611 159421720 -58615438 - MER5B DNA MER1_type -3 175 68 800 133 7 60 chr3 159423044 159423194 -58613964 + MLT1A1 LTR MaLR 1 142 -223 1505 198 24 46 chr3 159423637 159424010 -58613148 + MLT1A1 LTR MaLR 1 365 0 3143 65 29 34 chr3 159424142 159424588 -58612570 - MLT2A1 LTR ERVL 0 444 1 742 324 65 53 chr3 159425120 159425614 -58611544 + L3 LINE CR1 922 1421 -156 300 306 0 71 chr3 159426294 159426464 -58610694 + MIR SINE MIR 103 260 -2 526 275 121 11 chr3 159427247 159427429 -58609729 + L2 LINE L2 2764 2965 -349 21 57 0 0 chr3 159427567 159427602 -58609556 + AT_rich Low_complexity Low_complexity 1 35 0 1783 154 10 27 chr3 159428677 159428970 -58608188 + AluSx SINE Alu 1 288 -24 197 370 183 14 chr3 159429395 159430240 -58606918 + L2 LINE L2 1614 2601 -713 1973 129 47 50 chr3 159430615 159430978 -58606180 + THE1B LTR MaLR 1 362 -2 199 323 68 50 chr3 159431044 159431205 -58605953 + L2 LINE L2 3132 3295 -18 808 157 0 37 chr3 159431207 159431341 -58605817 - FLAM_C SINE Alu -4 129 1 1531 196 3 46 chr3 159431999 159432325 -58604833 + AluJo SINE Alu 1 312 0 204 37 0 0 chr3 159432467 159432474 -58604684 + (A)n Simple_repeat Simple_repeat 1 7 -20 690 308 6 57 chr3 159432474 159432792 -58604366 + AluJo SINE Alu 1 302 0 204 37 0 0 chr3 159432792 159432811 -58604347 + (A)n Simple_repeat Simple_repeat 6 27 0 546 173 9 0 chr3 159433187 159433297 -58603861 - L1MB7 LINE L1 -5 6179 6069 318 336 39 0 chr3 159433960 159434064 -58603094 + MER20B DNA MER1_type 56 163 -620 728 297 9 14 chr3 159434394 159434606 -58602552 + MIR SINE MIR 2 212 -50 185 225 113 38 chr3 159434707 159434787 -58602371 + MIR SINE MIR 68 153 -109 1573 125 59 3 chr3 159434788 159435077 -58602081 + L1MB1 LINE L1 5857 6161 -7 491 161 86 0 chr3 159435827 159435908 -58601250 + MER2 DNA MER2_type 1 88 -257 3272 158 43 4 chr3 159435919 159436471 -58600687 - MER6A DNA MER2_type 0 605 32 1485 138 24 8 chr3 159436477 159436723 -58600435 + MER2 DNA MER2_type 96 345 0 228 327 0 0 chr3 159436907 159436962 -58600196 - MIR SINE MIR -157 105 51 423 245 19 0 chr3 159437100 159437206 -58599952 + MER45A DNA AcHobo 71 178 0 186 133 0 0 chr3 159437585 159437615 -58599543 + (GGGAGA)n Simple_repeat Simple_repeat 6 35 0 228 250 0 0 chr3 159438250 159438310 -58598848 + T-rich Low_complexity Low_complexity 1 60 0 344 288 0 0 chr3 159438572 159438645 -58598513 - MER63A DNA MER1_type 0 210 138 262 102 220 0 chr3 159438982 159439041 -58598117 + MER5B DNA MER1_type 107 178 0 1682 110 15 42 chr3 159439106 159439369 -58597789 - LTR14 LTR ERVK -292 256 1 631 254 15 0 chr3 159439369 159439499 -58597659 - MER5A DNA MER1_type -56 133 2 278 355 45 41 chr3 159439505 159439750 -58597408 - L2 LINE L2 -1667 1647 1402 539 191 60 48 chr3 159440291 159440459 -58596699 - L1ME LINE L1 -347 5817 5648 4684 249 125 16 chr3 159440460 159443102 -58594056 - L1ME LINE L1 -452 5781 2831 * 39779 74 6 8 chr3 159443096 159449257 -58587901 - L1PA6 LINE L1 0 6154 1 531 248 31 6 chr3 159449268 159449429 -58587729 - L1ME LINE L1 -3379 2836 2672 6155 208 20 13 chr3 159449429 159450882 -58586276 - L1 LINE L1 -2072 4074 2612 304 313 49 35 chr3 159450888 159451339 -58585819 - L1ME LINE L1 -4320 2076 1578 1765 222 79 68 chr3 159451369 159452876 -58584282 - L1MDb LINE L1 -876 5664 1174 757 242 21 5 chr3 159453103 159453289 -58583869 + MER5A DNA MER1_type 1 189 0 644 234 59 106 chr3 159453500 159453773 -58583385 - MIR SINE MIR 0 262 3 442 223 19 0 chr3 159455040 159455143 -58582015 - MSTC LTR MaLR 0 428 324 325 189 2 0 chr3 159455145 159455207 -58581951 - MSTD LTR MaLR -217 148 83 19636 182 32 14 chr3 159455484 159459718 -58577440 + L1 LINE L1 15 4321 -3244 4675 174 11 5 chr3 159459715 159460657 -58576501 + L1 LINE L1 5546 6492 -1073 * 2570 117 3 5 chr3 159460657 159461033 -58576125 - THE1C LTR MaLR 0 375 1 9059 129 42 12 chr3 159461033 159462417 -58574741 - THE1C-int LTR MaLR 0 1580 155 936 164 15 14 chr3 159462634 159462967 -58574191 - MLT1B LTR MaLR -2 388 1 1274 209 32 19 chr3 159463230 159463541 -58573617 - Charlie1 DNA MER1_type -386 2375 2061 413 216 91 0 chr3 159463522 159463610 -58573548 - Charlie1 DNA MER1_type -2608 153 58 * 626 289 16 37 chr3 159463622 159463864 -58573294 + MIR SINE MIR 7 243 -19 262 321 0 0 chr3 159464146 159464230 -58572928 - MER5B DNA MER1_type -74 104 21 291 320 46 51 chr3 159464259 159464434 -58572724 - MER5B DNA MER1_type 0 178 5 9886 189 30 12 chr3 159464797 159467385 -58569773 - L1MA9 LINE L1 -7 7724 5185 255 31 0 0 chr3 159467385 159467417 -58569741 + (TTG)n Simple_repeat Simple_repeat 3 34 0 9886 189 30 12 chr3 159467417 159467564 -58569594 - L1MA9 LINE L1 -2546 5185 5042 1743 141 74 47 chr3 159467564 159467927 -58569231 + THE1C LTR MaLR 3 375 0 9886 189 30 12 chr3 159467927 159468299 -58568859 - L1MA9 LINE L1 -2689 5042 4555 461 192 96 0 chr3 159468304 159468408 -58568750 - FLAM_A SINE Alu -6 136 23 1550 208 3 16 chr3 159468425 159468790 -58568368 - L1MA9 LINE L1 -3019 4546 4187 493 200 0 43 chr3 159468837 159468952 -58568206 + FRAM SINE Alu 67 176 0 512 229 0 9 chr3 159468954 159469063 -58568095 - L1MA9 LINE L1 -3386 4179 4072 1145 217 8 25 chr3 159469073 159469313 -58567845 + AluJo SINE Alu 1 236 -76 440 229 0 10 chr3 159469341 159469437 -58567721 - L1MA9 LINE L1 -3386 4179 4085 * 2806 239 50 30 chr3 159469433 159470744 -58566414 - L1MA9 LINE L1 -3705 3860 2547 2069 133 74 17 chr3 159470749 159471102 -58566056 - THE1C LTR MaLR 0 375 3 7283 140 164 29 chr3 159471102 159471284 -58565874 - THE1C-int LTR MaLR -1 1579 1423 2189 117 0 0 chr3 159471284 159471584 -58565574 + AluSc SINE Alu 3 302 -7 7283 140 164 29 chr3 159471584 159472791 -58564367 - THE1C-int LTR MaLR -157 1423 2 2257 143 11 19 chr3 159472792 159473170 -58563988 - THE1C LTR MaLR 0 375 1 887 244 43 110 chr3 159473170 159473458 -58563700 - L1M3c LINE L1 -4648 1633 1406 4885 50 7 0 chr3 159473458 159474060 -58563098 - L1PA5 LINE L1 0 6154 5549 887 244 43 110 chr3 159474060 159474354 -58562804 - L1M3c LINE L1 -4875 1406 1094 9007 211 26 67 chr3 159474516 159476455 -58560703 + L1P4 LINE L1 2580 4323 -1842 342 0 0 0 chr3 159476455 159476493 -58560665 + (CA)n Simple_repeat Simple_repeat 2 39 0 9007 211 26 67 chr3 159476493 159477760 -58559398 + L1P4 LINE L1 4323 5640 -525 1262 173 34 25 chr3 159477765 159478002 -58559156 + THE1C-int LTR MaLR 536 774 -806 * 4004 100 5 7 chr3 159477990 159478548 -58558610 + THE1C-int LTR MaLR 1024 1580 0 2150 96 17 118 chr3 159478548 159478894 -58558264 + THE1C LTR MaLR 1 300 -75 6795 69 7 0 chr3 159478894 159480125 -58557033 + L1PA7 LINE L1 4914 6154 0 2150 96 17 118 chr3 159480125 159480195 -58556963 + THE1C LTR MaLR 300 375 0 1561 273 79 31 chr3 159480293 159481025 -58556133 - L1M4c LINE L1 -4160 2223 1339 2393 73 10 3 chr3 159481025 159481326 -58555832 - AluY SINE Alu -8 303 1 1561 273 79 31 chr3 159481326 159481661 -58555497 - L1M4c LINE L1 -5044 1339 1021 522 361 47 16 chr3 159482330 159482693 -58554465 - L1M4c LINE L1 -5724 589 216 972 276 65 33 chr3 159482704 159482994 -58554164 - L1ME3 LINE L1 0 6162 5883 1543 253 90 29 chr3 159482994 159483481 -58553677 + MLT2B1 LTR ERVL 2 518 -2 972 276 65 33 chr3 159483481 159483733 -58553425 - L1ME3 LINE L1 -279 5883 5603 912 271 49 61 chr3 159484077 159484486 -58552672 + MLT1I LTR MaLR 1 404 -5 2007 133 7 3 chr3 159486693 159486995 -58550163 + AluSx SINE Alu 1 303 -9 212 380 80 25 chr3 159487027 159487190 -58549968 + MIR3 SINE MIR 32 203 -5 49 43 0 0 chr3 159487339 159487409 -58549749 + AT_rich Low_complexity Low_complexity 1 70 0 188 98 0 24 chr3 159487411 159487452 -58549706 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 28 0 0 0 chr3 159487453 159487481 -58549677 + AT_rich Low_complexity Low_complexity 1 28 0 1377 86 0 91 chr3 159487790 159488033 -58549125 - MLT2A1 LTR ERVL -1 443 223 415 280 78 44 chr3 159488348 159488709 -58548449 + L1MEd LINE L1 104 476 -5643 350 251 88 12 chr3 159489358 159489529 -58547629 + Harlequin LTR ERV1 187 370 -6279 472 314 32 28 chr3 159489707 159489959 -58547199 + Harlequin LTR ERV1 718 970 -6815 746 315 81 20 chr3 159490200 159490806 -58546352 + Harlequin LTR ERV1 1290 1932 -5853 456 204 109 22 chr3 159490806 159490943 -58546215 + LTR18B LTR ERVL 347 495 -119 1358 308 19 11 chr3 159490968 159491598 -58545560 + Harlequin LTR ERV1 4835 5469 -2316 350 60 0 0 chr3 159491646 159491696 -58545462 - Alu SINE Alu 0 300 251 345 331 0 0 chr3 159491858 159492003 -58545155 + Harlequin LTR ERV1 2751 2895 -4001 267 309 0 0 chr3 159492225 159492319 -58544839 + Harlequin LTR ERV1 3034 3127 -3769 2134 114 0 0 chr3 159492798 159493156 -58544002 + AluSc SINE Alu 1 358 0 7445 36 1 0 chr3 159493648 159494643 -58542515 + L1PA5 LINE L1 5151 6146 -8 1234 285 55 57 chr3 159494933 159495685 -58541473 + Harlequin LTR ERV1 6898 7647 -138 365 270 52 23 chr3 159496314 159496488 -58540670 + L1MEd LINE L1 473 651 -5468 2253 124 0 0 chr3 159496689 159496987 -58540171 - AluSq SINE Alu -15 298 1 402 282 84 15 chr3 159497122 159497253 -58539905 + MIR SINE MIR 78 217 -45 438 244 0 0 chr3 159497889 159498004 -58539154 + L1MD2 LINE L1 6074 6188 -171 1588 222 0 9 chr3 159498375 159498695 -58538463 + MST-int LTR MaLR 742 1058 -593 2685 26 0 3 chr3 159498734 159499040 -58538118 + AluY SINE Alu 1 305 -6 2691 78 98 5 chr3 159499268 159499678 -58537480 + LTR7 LTR ERV1 1 448 -2 11188 90 35 16 chr3 159499680 159501409 -58535749 + HERVH LTR ERV1 1 1763 -5950 364 327 101 0 chr3 159501578 159501746 -58535412 - MIR SINE MIR -71 191 7 2428 97 0 0 chr3 159501905 159502213 -58534945 + AluSg SINE Alu 1 308 -2 31 0 0 0 chr3 159503154 159503185 -58533973 + AT_rich Low_complexity Low_complexity 1 31 0 187 297 14 27 chr3 159503546 159503620 -58533538 + MIR3 SINE MIR 135 207 -1 4109 261 19 47 chr3 159504569 159505635 -58531523 - L1PA12 LINE L1 -6539 1042 7 8978 43 3 3 chr3 159505859 159506930 -58530228 + MER11C LTR ERVK 1 1071 0 227 286 88 22 chr3 159508279 159508370 -58528788 - MIR SINE MIR -164 98 2 265 230 81 11 chr3 159508641 159508728 -58528430 + L1MDa LINE L1 795 887 -5653 943 285 126 31 chr3 159508877 159509021 -58528137 - L2 LINE L2 -1 3312 3183 2502 70 0 0 chr3 159509021 159509322 -58527836 + AluY SINE Alu 1 301 -10 943 285 126 31 chr3 159509322 159510067 -58527091 - L2 LINE L2 -130 3183 2326 252 269 0 0 chr3 159510214 159510307 -58526851 + (CATA)n Simple_repeat Simple_repeat 4 96 0 338 338 105 9 chr3 159510414 159510624 -58526534 - MIR SINE MIR -13 249 20 25 0 0 0 chr3 159510629 159510654 -58526504 + AT_rich Low_complexity Low_complexity 1 25 0 1458 87 0 0 chr3 159510654 159510861 -58526297 - L1MA1 LINE L1 -6 6296 6090 476 250 123 17 chr3 159511282 159511518 -58525640 + L1ME3A LINE L1 5633 5893 -277 21 0 0 0 chr3 159511530 159511551 -58525607 + AT_rich Low_complexity Low_complexity 1 21 0 1408 182 75 15 chr3 159511805 159512140 -58525018 + L1MA9 LINE L1 5958 6312 0 2777 137 9 2 chr3 159512548 159512973 -58524185 - MSTA LTR MaLR 0 428 1 2705 76 98 10 chr3 159513227 159513637 -58523521 + LTR7 LTR ERV1 3 448 -2 13758 104 17 35 chr3 159513639 159516364 -58520794 + HERVH LTR ERV1 1 2985 -4728 5267 119 2 6 chr3 159516360 159517218 -58519940 + HERVH LTR ERV1 3140 3994 -3719 * 4089 143 0 1 chr3 159517219 159517882 -58519276 + HERVH LTR ERV1 4488 5149 -2564 1417 107 19 0 chr3 159517883 159518099 -58519059 + HERVH LTR ERV1 5600 5819 -1894 2205 99 56 13 chr3 159518099 159518473 -58518685 + HERVH LTR ERV1 7324 7713 0 2557 85 122 5 chr3 159518473 159518874 -58518284 + LTR7 LTR ERV1 1 448 -2 2272 188 31 5 chr3 159519006 159519421 -58517737 + MSTB LTR MaLR 1 426 0 233 222 0 28 chr3 159519575 159519647 -58517511 + L1MC4a LINE L1 7181 7250 -558 1101 208 53 35 chr3 159519651 159520026 -58517132 - MLT1D-int LTR MaLR -982 389 8 3664 166 199 8 chr3 159520114 159520963 -58516195 - Tigger7 DNA MER2_type -1464 1023 13 487 248 0 0 chr3 159520985 159521102 -58516056 - MLT1D LTR MaLR 0 505 389 1418 191 27 73 chr3 159521102 159521400 -58515758 + MLT1B LTR MaLR 1 276 -114 907 66 8 0 chr3 159521400 159521521 -58515637 - L1PA7 LINE L1 0 6154 6033 1418 191 27 73 chr3 159521521 159521631 -58515527 + MLT1B LTR MaLR 276 390 0 959 229 83 30 chr3 159521631 159521895 -58515263 - MLT1D LTR MaLR -112 393 116 417 20 0 0 chr3 159522260 159522310 -58514848 + (GA)n Simple_repeat Simple_repeat 2 51 0 317 256 85 54 chr3 159524516 159524645 -58512513 + MIR3 SINE MIR 43 175 -33 202 205 0 0 chr3 159525077 159525116 -58512042 + (CATATA)n Simple_repeat Simple_repeat 6 44 0 1061 219 13 4 chr3 159525307 159525535 -58511623 + L1M4 LINE L1 23 252 -6290 322 348 54 11 chr3 159526922 159527106 -58510052 + L1MC4a LINE L1 5388 5579 -2229 325 320 29 0 chr3 159527155 159527330 -58509828 + L1MC4a LINE L1 5670 5849 -1959 15349 52 2 1 chr3 159527567 159530273 -58506885 - L1PA5 LINE L1 -6 6148 3440 199 244 0 0 chr3 159531125 159531166 -58505992 - MIR SINE MIR -63 199 159 1158 151 48 0 chr3 159531166 159531372 -58505786 - MSTB1 LTR MaLR 0 432 217 2057 153 8 8 chr3 159531372 159531739 -58505419 + MST-int LTR MaLR 95 461 -1190 2276 78 0 0 chr3 159531739 159532020 -58505138 - AluY SINE Alu -8 303 23 461 221 76 0 chr3 159532164 159532295 -58504863 + MST-int LTR MaLR 455 595 -1056 431 106 30 14 chr3 159532295 159532386 -58504772 + MSTB1 LTR MaLR 282 432 0 285 54 0 0 chr3 159533418 159533455 -58503703 + LTR10A LTR ERV1 565 601 -8 1069 222 16 32 chr3 159533467 159533715 -58503443 - MSTB1 LTR MaLR -152 244 1 1830 227 79 40 chr3 159533715 159534169 -58502989 - MLT-int LTR MaLR 0 1735 1264 4590 41 4 2 chr3 159534172 159534729 -58502429 - LTR6B LTR ERV1 0 558 1 2102 132 3 3 chr3 159534729 159535039 -58502119 - HERVS71 LTR ERV1 -69 8909 8600 6578 125 9 2 chr3 159535045 159535998 -58501160 - HERVS71 LTR ERV1 -1192 7786 6827 932 207 217 28 chr3 159536143 159536280 -58500878 + MLT1D LTR MaLR 161 271 -234 203 30 0 61 chr3 159536280 159536313 -58500845 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 932 207 217 28 chr3 159536313 159536465 -58500693 + MLT1D LTR MaLR 271 505 0 1854 208 199 128 chr3 159536465 159537714 -58499444 + MLT1D-int LTR MaLR 1 1337 -34 566 270 11 58 chr3 159537750 159537939 -58499219 + MLT1D LTR MaLR 5 184 -321 298 233 216 9 chr3 159537958 159538074 -58499084 + MLT1D LTR MaLR 310 449 -56 1110 157 13 13 chr3 159538075 159538310 -58498848 - L1MA4A LINE L1 -3 6300 6066 422 158 13 0 chr3 159538310 159538386 -58498772 + L1M4 LINE L1 5549 5625 -559 16914 69 4 3 chr3 159539311 159541590 -58495568 + L1P LINE L1 1051 3331 -2815 192 358 42 25 chr3 159542334 159542454 -58494704 + MIR3 SINE MIR 75 196 -12 363 311 80 19 chr3 159542701 159542913 -58494245 + L1ME LINE L1 5600 5824 -297 22 80 0 0 chr3 159542974 159543024 -58494134 + AT_rich Low_complexity Low_complexity 1 50 0 352 80 0 0 chr3 159543148 159543198 -58493960 - Alu SINE Alu -5 296 247 23 78 0 0 chr3 159543567 159543618 -58493540 + AT_rich Low_complexity Low_complexity 1 51 0 666 124 0 0 chr3 159543682 159543779 -58493379 + L1P LINE L1 1 97 -6049 1103 178 139 28 chr3 159543921 159544208 -58492950 - LTR10A LTR ERV1 -290 319 1 3333 235 12 0 chr3 159544263 159545001 -58492157 - MSTD-int LTR MaLR -915 767 38 1655 215 12 32 chr3 159545009 159545413 -58491745 - MSTD LTR MaLR 0 396 1 21 0 0 0 chr3 159547045 159547066 -58490092 + AT_rich Low_complexity Low_complexity 1 21 0 7687 114 15 9 chr3 159547166 159548252 -58488906 + HERVS71 LTR ERV1 2145 3236 -5742 5780 127 38 6 chr3 159548236 159549078 -58488080 + HERVS71 LTR ERV1 4805 5673 -3305 * 2828 121 12 2 chr3 159549077 159549489 -58487669 + HERVS71 LTR ERV1 6070 6485 -2493 * 3665 104 56 9 chr3 159549592 159550128 -58487030 - HERVS71 LTR ERV1 -8414 564 4 4456 47 13 2 chr3 159550130 159550682 -58486476 - LTR6B LTR ERV1 0 558 1 840 285 177 15 chr3 159550687 159551061 -58486097 - MLT-int LTR MaLR -431 1220 799 587 105 37 20 chr3 159551092 159551199 -58485959 - LTR10A LTR ERV1 0 609 458 248 200 40 0 chr3 159551306 159551356 -58485802 + MER5A DNA MER1_type 137 188 -1 8108 128 9 3 chr3 159553175 159554336 -58482822 + HERVS71 LTR ERV1 910 2076 -6902 305 221 35 23 chr3 159554473 159554559 -58482599 + MLT1H LTR MaLR 71 157 -392 646 289 66 45 chr3 159555336 159555724 -58481434 + MLT1H LTR MaLR 1 443 -106 21 0 0 0 chr3 159556050 159556071 -58481087 + AT_rich Low_complexity Low_complexity 1 21 0 276 312 0 0 chr3 159556446 159556523 -58480635 + (TATATG)n Simple_repeat Simple_repeat 3 79 0 217 341 24 12 chr3 159556851 159556933 -58480225 + MIR SINE MIR 57 139 -123 803 192 42 18 chr3 159557189 159557356 -58479802 - MER5A DNA MER1_type -12 177 7 632 278 13 38 chr3 159557570 159557747 -58479411 + MER5A DNA MER1_type 9 172 -6 586 225 25 8 chr3 159557752 159557872 -58479286 - MER5B DNA MER1_type 0 178 57 381 172 11 58 chr3 159557873 159557960 -58479198 - L1MC1 LINE L1 -15 6318 6236 288 274 0 0 chr3 159557962 159558024 -58479134 + MER5B DNA MER1_type 114 175 -3 321 320 102 5 chr3 159558640 159558837 -58478321 + L1MCc LINE L1 1047 1262 -5161 534 221 66 71 chr3 159558891 159559117 -58478041 - L1MC4a LINE L1 -437 7371 7147 779 266 36 9 chr3 159559178 159559400 -58477758 - L1MC4 LINE L1 -1055 6987 6760 4356 178 21 6 chr3 159560055 159560947 -58476211 + L1 LINE L1 4361 5266 -880 21311 188 23 12 chr3 159560949 159566130 -58471028 - L1 LINE L1 -2308 5257 15 699 226 71 0 chr3 159566266 159566421 -58470737 - MER5B DNA MER1_type -11 167 2 413 316 103 7 chr3 159566438 159566593 -58470565 - MER5B DNA MER1_type -8 170 1 337 179 0 0 chr3 159566593 159566649 -58470509 - L1MC5 LINE L1 -588 7373 7318 29 70 0 0 chr3 159568559 159568616 -58468542 + AT_rich Low_complexity Low_complexity 1 57 0 29 94 0 0 chr3 159568802 159568887 -58468271 + AT_rich Low_complexity Low_complexity 1 85 0 2409 75 13 0 chr3 159568956 159569264 -58467894 - AluSq SINE Alu -1 312 1 293 343 0 0 chr3 159569264 159569337 -58467821 + MER21B LTR ERV1 18 90 -773 2606 253 61 34 chr3 159569357 159570123 -58467035 + MER21B LTR ERV1 19 805 -58 364 264 13 44 chr3 159570687 159570846 -58466312 + (CATATA)n Simple_repeat Simple_repeat 3 156 0 432 254 60 54 chr3 159571050 159571235 -58465923 - Charlie8 DNA MER1_type -2153 264 79 21 36 0 0 chr3 159574161 159574189 -58462969 + AT_rich Low_complexity Low_complexity 1 28 0 23 78 0 0 chr3 159574220 159574271 -58462887 + AT_rich Low_complexity Low_complexity 1 51 0 1271 121 14 40 chr3 159574743 159574966 -58462192 + LTR5 LTR ERVK 753 969 0 1771 177 35 21 chr3 159577218 159577557 -58459601 + MER2 DNA MER2_type 1 344 0 599 280 22 16 chr3 159578748 159578930 -58458228 + MIR SINE MIR 70 252 -10 817 216 40 25 chr3 159579908 159580107 -58457051 + MER20 DNA MER1_type 17 218 -1 191 204 20 0 chr3 159581368 159581417 -58455741 + CT-rich Low_complexity Low_complexity 3 52 0 22 56 0 0 chr3 159582382 159582418 -58454740 + AT_rich Low_complexity Low_complexity 1 36 0 399 296 146 62 chr3 159582481 159583073 -58454085 + L1ME4a LINE L1 5254 5895 -226 240 345 134 6 chr3 159583678 159583849 -58453309 + L2 LINE L2 1963 2155 -1159 246 227 30 0 chr3 159583910 159583976 -58453182 - HAL1 LINE L1 0 2507 2440 737 213 35 41 chr3 159584029 159584343 -58452815 - L1M4 LINE L1 -1529 4617 4306 2324 166 37 11 chr3 159584358 159584792 -58452366 - MER65A LTR ERV1 0 445 1 2023 243 21 6 chr3 159584792 159585258 -58451900 - MER65A-int LTR ERV1 0 4871 4399 1726 241 76 11 chr3 159585227 159585687 -58451471 - MER65A-int LTR ERV1 -779 4092 3603 * 1991 207 109 78 chr3 159585855 159586585 -58450573 - MER31-int LTR ERV1 -1137 4694 3077 31 76 0 0 chr3 159586744 159586810 -58450348 + AT_rich Low_complexity Low_complexity 1 66 0 548 219 67 3 chr3 159588001 159588156 -58449002 - MER45A DNA AcHobo 0 178 5 22 88 0 0 chr3 159588480 159588537 -58448621 + AT_rich Low_complexity Low_complexity 1 57 0 670 260 40 0 chr3 159588632 159588782 -58448376 + FRAM SINE Alu 1 156 -10 2521 196 240 67 chr3 159589323 159590190 -58446968 + LTR28 LTR ERV1 4 1020 0 263 301 19 29 chr3 159590247 159590350 -58446808 - MIR SINE MIR -109 153 52 216 0 0 0 chr3 159590391 159590415 -58446743 + (A)n Simple_repeat Simple_repeat 1 24 0 216 0 0 0 chr3 159590943 159590967 -58446191 + (A)n Simple_repeat Simple_repeat 1 24 0 493 301 89 20 chr3 159590982 159591185 -58445973 - MIR SINE MIR -26 236 20 22 35 0 0 chr3 159591780 159591809 -58445349 + AT_rich Low_complexity Low_complexity 1 29 0 1396 160 73 84 chr3 159592240 159592608 -58444550 - THE1B LTR MaLR 0 364 1 195 100 0 0 chr3 159593070 159593100 -58444058 + (A)n Simple_repeat Simple_repeat 1 30 0 705 201 104 34 chr3 159593873 159594141 -58443017 + L1MC4 LINE L1 7751 8037 -5 303 104 0 60 chr3 159594625 159594692 -58442466 + MLT2B1 LTR ERVL 458 520 0 23 0 0 0 chr3 159595004 159595027 -58442131 + AT_rich Low_complexity Low_complexity 1 23 0 384 326 135 25 chr3 159595156 159595401 -58441757 - L2 LINE L2 -341 2973 2702 831 181 0 0 chr3 159595783 159595910 -58441248 - FLAM_C SINE Alu -16 127 1 2228 103 3 10 chr3 159595973 159596283 -58440875 - AluSg SINE Alu -2 308 1 21 0 0 0 chr3 159596610 159596631 -58440527 + AT_rich Low_complexity Low_complexity 1 21 0 1857 74 115 4 chr3 159596703 159596973 -58440185 - AluY SINE Alu -11 300 1 671 209 13 13 chr3 159597750 159597908 -58439250 + MLT2B1 LTR ERVL 361 518 -2 1196 209 139 14 chr3 159598434 159598864 -58438294 + LTR54B LTR ERV1 15 498 0 1921 167 0 6 chr3 159599677 159599989 -58437169 - AluSg SINE Alu 0 310 1 222 341 24 12 chr3 159600219 159600301 -58436857 - MIR SINE MIR -123 139 57 276 312 0 0 chr3 159600629 159600706 -58436452 + (CATATA)n Simple_repeat Simple_repeat 3 79 0 218 330 90 77 chr3 159601005 159601496 -58435662 - L2 LINE L2 -8 3305 2809 394 264 22 114 chr3 159602057 159602284 -58434874 - MIR SINE MIR 0 262 57 1983 102 3 11 chr3 159603798 159604082 -58433076 + AluSx SINE Alu 18 299 -13 808 263 21 10 chr3 159604282 159604514 -58432644 + MIR SINE MIR 19 252 -10 519 312 63 41 chr3 159604773 159605081 -58432077 - L1ME LINE L1 -608 6054 5723 2166 123 10 0 chr3 159605081 159605381 -58431777 - AluSx SINE Alu -9 303 1 519 312 63 41 chr3 159605381 159605517 -58431641 - L1ME LINE L1 -939 5723 5592 343 298 113 14 chr3 159605575 159605867 -58431291 - L1ME LINE L1 -3283 3361 3041 1759 172 11 56 chr3 159605905 159606282 -58430876 - MLT1A1 LTR MaLR -5 360 1 795 239 50 34 chr3 159606287 159606525 -58430633 - MLT1A2 LTR MaLR 0 374 133 2220 115 7 10 chr3 159606821 159607125 -58430033 - AluSx SINE Alu -9 303 1 800 251 5 0 chr3 159607223 159607410 -58429748 - MER5A DNA MER1_type -1 188 1 237 158 0 53 chr3 159607618 159607675 -58429483 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 3275 233 9 31 chr3 159607939 159608968 -58428190 - L1P LINE L1 -4274 1872 867 2012 281 19 2 chr3 159608968 159609591 -58427567 - L1ME LINE L1 -5448 1094 461 4288 215 24 17 chr3 159609617 159610629 -58426529 + L1PA10 LINE L1 1 1019 -4856 35332 91 11 7 chr3 159610645 159616528 -58420630 + L1PA6 LINE L1 11 5915 -239 1070 64 0 0 chr3 159616516 159616657 -58420501 + L1P LINE L1 4113 4253 -1893 * 802 50 0 8 chr3 159616657 159616776 -58420382 + L1P LINE L1 5232 5349 -797 * 1151 82 21 6 chr3 159616774 159616953 -58420205 + L1PA6 LINE L1 5921 6134 -18 459 0 0 0 chr3 159616957 159617008 -58420150 + (TA)n Simple_repeat Simple_repeat 1 51 0 23281 157 8 16 chr3 159617014 159619207 -58417951 + L1PA10 LINE L1 1023 3232 -3251 2250 111 36 28 chr3 159619207 159619568 -58417590 - THE1B LTR MaLR 0 364 1 23281 157 8 16 chr3 159619568 159622833 -58414325 + L1PA10 LINE L1 3232 6479 -4 542 263 6 70 chr3 159622875 159623046 -58414112 - L1M4 LINE L1 -6112 430 271 424 181 21 11 chr3 159623070 159623164 -58413994 - MLT1D LTR MaLR -18 487 393 516 302 28 0 chr3 159623237 159623416 -58413742 - MLT1D LTR MaLR -321 184 1 1007 271 20 62 chr3 159623439 159623841 -58413317 - MLT1D-int LTR MaLR -24 1347 963 4386 248 22 11 chr3 159623913 159625751 -58411407 - L1P LINE L1 -3561 3236 1368 3984 251 34 17 chr3 159625751 159627148 -58410010 + L1P LINE L1 3235 4655 -2142 207 0 0 0 chr3 159627286 159627309 -58409849 + (T)n Simple_repeat Simple_repeat 1 23 0 8383 140 30 30 chr3 159627545 159628997 -58408161 + THE1C-int LTR MaLR 129 1580 0 1822 146 29 55 chr3 159629009 159629394 -58407764 + THE1C LTR MaLR 1 375 0 180 0 0 0 chr3 159629513 159629533 -58407625 + (TG)n Simple_repeat Simple_repeat 1 20 0 240 24 98 0 chr3 159629533 159629574 -58407584 - L1MA2 LINE L1 -14 6290 6246 750 231 102 43 chr3 159630155 159630555 -58406603 + MLT1E2 LTR MaLR 59 513 -113 1837 176 32 49 chr3 159630558 159631132 -58406026 + MLT2A2 LTR ERVL 1 552 -2 541 212 8 8 chr3 159631132 159631237 -58405921 + MLT1E2 LTR MaLR 509 613 -13 2362 125 23 81 chr3 159631367 159631839 -58405319 - MER65A LTR ERV1 0 445 1 1911 174 122 10 chr3 159632568 159632954 -58404204 - MSTB1 LTR MaLR -3 429 1 1949 117 117 6 chr3 159633351 159633692 -58403466 - MER9 LTR ERVK 0 511 133 28 29 0 0 chr3 159633707 159633742 -58403416 + AT_rich Low_complexity Low_complexity 1 35 0 341 245 0 98 chr3 159633958 159634060 -58403098 + MER21B LTR ERV1 1 92 -771 2979 234 59 20 chr3 159634083 159634882 -58402276 + MER21B LTR ERV1 23 852 -11 2035 206 21 14 chr3 159634899 159635335 -58401823 + MLT2B1 LTR ERVL 82 520 0 205 370 114 34 chr3 159636753 159636846 -58400312 + L2 LINE L2 2308 2392 -922 402 21 0 0 chr3 159636846 159636893 -58400265 + (TG)n Simple_repeat Simple_repeat 2 48 0 205 370 114 34 chr3 159636893 159637264 -58399894 + L2 LINE L2 2392 2809 -505 458 315 138 29 chr3 159637334 159637610 -58399548 - MLT1J2 LTR MaLR -63 387 82 1050 270 30 20 chr3 159638249 159638549 -58398609 + MLT1J1 LTR MaLR 28 330 -116 21 36 0 0 chr3 159638583 159638611 -58398547 + AT_rich Low_complexity Low_complexity 1 28 0 1879 121 4 0 chr3 159638680 159638944 -58398214 + AluSc SINE Alu 39 303 -6 222 271 17 0 chr3 159639554 159639613 -58397545 + (TA)n Simple_repeat Simple_repeat 2 61 0 186 43 0 0 chr3 159639613 159639636 -58397522 + (CA)n Simple_repeat Simple_repeat 2 24 0 309 276 112 0 chr3 159639715 159639831 -58397327 - MLT1L LTR MaLR -435 180 52 629 305 0 0 chr3 159639831 159640018 -58397140 + MER5A DNA MER1_type 2 188 -1 243 303 25 43 chr3 159640229 159640391 -58396767 + HAL1 LINE L1 142 300 -2207 618 330 15 5 chr3 159640681 159640884 -58396274 - MIR SINE MIR -21 241 37 2388 205 31 3 chr3 159641240 159641798 -58395360 - L1MA9 LINE L1 -991 5155 4534 * 3591 167 3 42 chr3 159641797 159642627 -58394531 + L1MA9 LINE L1 5146 5942 -349 17604 95 8 41 chr3 159642681 159645263 -58391895 + Charlie3 DNA MER1_type 211 2706 -4 550 264 24 24 chr3 159645282 159645494 -58391664 + L1MA9 LINE L1 5984 6195 -117 357 306 162 44 chr3 159646787 159647016 -58390142 + MIR SINE MIR 7 262 0 206 286 143 53 chr3 159647472 159647814 -58389344 + L2 LINE L2 2818 3190 -123 632 136 10 0 chr3 159648090 159648193 -58388965 - MSTC LTR MaLR 0 428 325 653 209 8 8 chr3 159648196 159648325 -58388833 - MER7A DNA MER2_type -1 345 217 210 299 52 0 chr3 159648419 159648516 -58388642 - L2 LINE L2 -338 2976 2875 1031 132 191 10 chr3 159648519 159648723 -58388435 - MER7A DNA MER2_type -107 239 1 1557 178 56 0 chr3 159648729 159648999 -58388159 - MSTD LTR MaLR -111 285 1 3662 105 17 13 chr3 159651240 159651763 -58385395 + MER1A DNA MER1_type 3 527 0 29 0 0 0 chr3 159651972 159652001 -58385157 + AT_rich Low_complexity Low_complexity 1 29 0 1588 210 14 0 chr3 159652827 159653113 -58384045 - AluJb SINE Alu -22 290 1 303 306 9 0 chr3 159655081 159655192 -58381966 + (TA)n Simple_repeat Simple_repeat 1 112 0 1686 91 0 9 chr3 159655779 159656035 -58381123 - AluSg/x SINE Alu 0 310 75 199 276 52 0 chr3 159656396 159656454 -58380704 + L2 LINE L2 3197 3257 -15 256 196 0 0 chr3 159656606 159656657 -58380501 - MER116 DNA Mariner -27 53 3 25 0 0 0 chr3 159656710 159656735 -58380423 + AT_rich Low_complexity Low_complexity 1 25 0 312 111 0 0 chr3 159657274 159657328 -58379830 + (GA)n Simple_repeat Simple_repeat 1 54 0 22 35 0 0 chr3 159657358 159657387 -58379771 + AT_rich Low_complexity Low_complexity 1 29 0 590 260 18 24 chr3 159658216 159658385 -58378773 + MER5B DNA MER1_type 11 178 0 477 285 7 35 chr3 159658653 159658797 -58378361 - MIR SINE MIR -17 245 106 324 305 79 45 chr3 159658859 159659036 -58378122 + MIR SINE MIR 57 239 -23 269 268 45 95 chr3 159659417 159659596 -58377562 + L2 LINE L2 2890 3059 -213 192 254 200 0 chr3 159659743 159659798 -58377360 + L2 LINE L2 3139 3204 -68 316 356 40 34 chr3 159659828 159660005 -58377153 + L2 LINE L2 2698 2875 -439 216 339 69 23 chr3 159660230 159660360 -58376798 + L2 LINE L2 3137 3272 0 22 35 0 0 chr3 159660758 159660787 -58376371 + AT_rich Low_complexity Low_complexity 1 29 0 2393 85 0 3 chr3 159660896 159661202 -58375956 + AluY SINE Alu 5 309 -2 879 199 25 35 chr3 159661218 159661419 -58375739 - MER20 DNA MER1_type -9 210 12 482 247 97 13 chr3 159662317 159662471 -58374687 - MIR SINE MIR -3 259 93 5039 126 25 59 chr3 159663229 159663559 -58373599 - L1MA5 LINE L1 -12 6288 5948 2101 105 11 0 chr3 159663559 159663845 -58373313 - AluSg SINE Alu -21 289 1 5039 126 25 59 chr3 159663845 159664484 -58372674 - L1MA5 LINE L1 -352 5948 5352 2259 97 0 3 chr3 159664493 159664793 -58372365 - AluY SINE Alu -2 309 11 30 0 0 0 chr3 159664873 159664903 -58372255 + AT_rich Low_complexity Low_complexity 1 30 0 6693 113 10 9 chr3 159667473 159668440 -58368718 - LTR5 LTR ERVK 0 969 2 532 241 37 102 chr3 159669804 159670049 -58367109 + MER102a DNA MER1_type 83 311 -19 499 233 9 0 chr3 159670469 159670585 -58366573 + MER105 DNA DNA 43 159 -45 565 266 35 14 chr3 159671465 159671608 -58365550 + MIR SINE MIR 12 157 -105 331 237 101 43 chr3 159672496 159672635 -58364523 - MLT1I LTR MaLR -260 149 3 24 77 0 0 chr3 159673274 159673326 -58363832 + AT_rich Low_complexity Low_complexity 1 52 0 230 132 0 0 chr3 159674121 159674159 -58362999 + L1MC5 LINE L1 7324 7361 -600 551 232 166 7 chr3 159674170 159674321 -58362837 + MER5B DNA MER1_type 1 175 -3 25 0 0 0 chr3 159674970 159674995 -58362163 + AT_rich Low_complexity Low_complexity 1 25 0 2072 196 138 80 chr3 159675601 159676452 -58360706 - LTR28 LTR ERV1 0 1020 1 360 258 65 24 chr3 159677342 159677466 -58359692 - L1MC4a LINE L1 -1923 5885 5757 226 350 110 12 chr3 159677624 159677787 -58359371 - MIR SINE MIR -76 186 8 43 101 0 0 chr3 159678090 159678219 -58358939 + AT_rich Low_complexity Low_complexity 1 129 0 23 0 0 0 chr3 159678477 159678500 -58358658 + AT_rich Low_complexity Low_complexity 1 23 0 200 379 0 0 chr3 159679245 159679311 -58357847 - L2 LINE L2 -1514 1800 1735 438 247 18 60 chr3 159679314 159679480 -58357678 + MER96B DNA MER1_type? 1 159 -258 405 320 78 4 chr3 159679694 159679925 -58357233 - L2 LINE L2 -1741 1573 1326 235 264 131 53 chr3 159679964 159680213 -58356945 + L2 LINE L2 2776 3053 -219 191 204 20 0 chr3 159681125 159681174 -58355984 + GA-rich Low_complexity Low_complexity 3 52 0 226 283 0 94 chr3 159681654 159681760 -58355398 + MIR SINE MIR 108 203 -59 2208 122 0 0 chr3 159682149 159682445 -58354713 + AluSq SINE Alu 1 296 -17 1350 232 11 38 chr3 159682998 159683365 -58353793 - MLT1A1 LTR MaLR -7 358 2 227 375 178 36 chr3 159683606 159683915 -58353243 - L2 LINE L2 -2 3270 2918 351 200 0 0 chr3 159684032 159684092 -58353066 + AluJ/FLAM SINE Alu 1 60 -242 24 45 4 0 chr3 159684510 159684581 -58352577 + AT_rich Low_complexity Low_complexity 1 45 0 697 224 14 51 chr3 159685302 159685575 -58351583 + L1MC4 LINE L1 6992 7332 -556 655 235 36 65 chr3 159685586 159685833 -58351325 - MLT1A2-int LTR MaLR -985 386 147 1471 207 60 41 chr3 159685840 159686207 -58350951 - MLT1A2 LTR MaLR 0 374 1 2216 213 16 53 chr3 159686207 159686700 -58350458 - MLT1A2-int LTR MaLR 0 1735 1261 241 299 0 15 chr3 159686784 159686851 -58350307 - MLT1A2-int LTR MaLR -994 741 676 556 209 26 0 chr3 159686947 159687062 -58350096 - LTR24C LTR ERV1 0 635 518 709 192 104 136 chr3 159687342 159687650 -58349508 - LTR54 LTR ERV1 -208 302 5 342 0 0 0 chr3 159687650 159687688 -58349470 + (CA)n Simple_repeat Simple_repeat 2 39 0 304 91 0 6 chr3 159687691 159687749 -58349409 + MLT2D LTR ERVL 374 412 -2 378 314 61 48 chr3 159687771 159688211 -58348947 - L1ME LINE L1 -408 5713 5268 240 348 89 5 chr3 159688362 159688586 -58348572 - L1ME LINE L1 -1111 5035 4793 22 35 0 0 chr3 159688910 159688939 -58348219 + AT_rich Low_complexity Low_complexity 1 29 0 3847 139 9 3 chr3 159689188 159689819 -58347339 + MER41B LTR ERV1 1 635 0 2173 60 0 11 chr3 159689970 159690253 -58346905 + AluY SINE Alu 1 280 -31 2276 192 26 2 chr3 159691309 159691725 -58345433 - MSTB LTR MaLR 0 426 1 25 65 0 0 chr3 159691896 159691942 -58345216 + AT_rich Low_complexity Low_complexity 1 46 0 383 299 14 54 chr3 159691958 159692105 -58345053 + MIR SINE MIR 15 155 -107 202 267 25 92 chr3 159692141 159692261 -58344897 + MIR SINE MIR 151 262 0 1284 237 18 60 chr3 159692326 159692706 -58344452 + MLT1A1 LTR MaLR 1 364 -1 698 223 16 36 chr3 159692836 159693029 -58344129 - MER5A DNA MER1_type 0 189 1 28 79 0 0 chr3 159693132 159693195 -58343963 + AT_rich Low_complexity Low_complexity 1 63 0 2279 107 3 0 chr3 159693849 159694157 -58343001 - AluSp SINE Alu -4 309 1 209 305 57 50 chr3 159694855 159694996 -58342162 + MIR SINE MIR 50 191 -71 22 0 0 0 chr3 159695007 159695029 -58342129 + AT_rich Low_complexity Low_complexity 1 22 0 5020 123 15 25 chr3 159695788 159697177 -58339981 - pTR5 LTR ERV1 0 2438 743 1342 229 67 9 chr3 159698540 159698881 -58338277 - MLT1A1 LTR MaLR 0 365 5 212 269 108 69 chr3 159699262 159699392 -58337766 + MIR3 SINE MIR 40 174 -34 21 57 0 0 chr3 159699893 159699928 -58337230 + AT_rich Low_complexity Low_complexity 1 35 0 566 269 66 4 chr3 159700082 159700309 -58336849 + L1M4 LINE L1 21 261 -6281 225 0 0 0 chr3 159700491 159700516 -58336642 + (A)n Simple_repeat Simple_repeat 1 25 0 2585 225 47 6 chr3 159700639 159701280 -58335878 - L1P LINE L1 -2128 4018 3352 25 31 0 0 chr3 159701824 159701856 -58335302 + AT_rich Low_complexity Low_complexity 1 32 0 205 28 0 56 chr3 159702103 159702139 -58335019 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 621 325 93 16 chr3 159702261 159702600 -58334558 - L2 LINE L2 -161 3152 2777 289 349 26 33 chr3 159703282 159703434 -58333724 - MIR SINE MIR 0 262 112 21 0 0 0 chr3 159704204 159704225 -58332933 + AT_rich Low_complexity Low_complexity 1 21 0 1001 193 30 0 chr3 159704389 159704586 -58332572 + L1PBa LINE L1 2 204 -6659 * 10287 137 44 8 chr3 159704574 159707612 -58329546 + L1PBa LINE L1 625 3900 -2962 240 35 0 0 chr3 159707612 159707641 -58329517 + (CA)n Simple_repeat Simple_repeat 2 30 0 10287 137 44 8 chr3 159707641 159707720 -58329438 + L1PBa LINE L1 3900 3975 -2887 274 253 99 0 chr3 159707730 159707821 -58329337 + L1M4 LINE L1 3013 3112 -3034 255 283 174 0 chr3 159709595 159709687 -58327471 - L2 LINE L2 -9 3304 3197 2641 91 101 0 chr3 159709923 159710330 -58326828 - LTR7 LTR ERV1 -2 448 1 2224 116 50 13 chr3 159710330 159710708 -58326450 - HERVH LTR ERV1 0 7713 7322 1390 129 18 5 chr3 159710706 159710923 -58326235 - HERVH LTR ERV1 -1894 5819 5600 * 4440 139 0 3 chr3 159710924 159711598 -58325560 - HERVH LTR ERV1 -2564 5149 4478 * 5836 104 5 3 chr3 159711588 159712442 -58324716 - HERVH LTR ERV1 -3719 3994 3140 4257 116 1 11 chr3 159712436 159713089 -58324069 - HERVH LTR ERV1 -4726 2987 2341 * 1280 189 11 13 chr3 159714226 159714508 -58322650 - MLT1A1 LTR MaLR -13 352 4 1248 149 5 0 chr3 159714566 159714754 -58322404 + AluSx SINE Alu 1 189 -123 211 231 19 0 chr3 159714919 159714971 -58322187 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 279 0 0 0 chr3 159715118 159715149 -58322009 + (TG)n Simple_repeat Simple_repeat 2 32 0 439 242 0 10 chr3 159717886 159717985 -58319173 - MER63 DNA MER1_type -307 755 32 420 299 58 5 chr3 159717992 159718042 -58319116 - MER20B DNA MER1_type -5 214 168 2108 83 36 27 chr3 159718042 159718343 -58318815 + AluSc SINE Alu 1 304 -5 420 299 58 5 chr3 159718343 159718477 -58318681 - MER20B DNA MER1_type -51 168 16 637 172 30 124 chr3 159718796 159719029 -58318129 + MER33 DNA MER1_type 5 215 -109 2274 60 0 11 chr3 159719029 159719355 -58317803 - AluY SINE Alu 0 323 1 628 276 29 11 chr3 159719698 159719872 -58317286 - LTR33 LTR ERVL -307 214 38 23 33 0 0 chr3 159720388 159720418 -58316740 + AT_rich Low_complexity Low_complexity 1 30 0 243 79 0 0 chr3 159720548 159720586 -58316572 + (CA)n Simple_repeat Simple_repeat 1 38 0 310 123 77 0 chr3 159721526 159721591 -58315567 - L1MA1 LINE L1 -196 6106 6037 638 87 325 0 chr3 159721602 159721728 -58315430 + L1MA3 LINE L1 6139 6305 0 23 0 0 0 chr3 159721981 159722004 -58315154 + AT_rich Low_complexity Low_complexity 1 23 0 375 317 104 69 chr3 159722623 159723144 -58314014 + L2 LINE L2 1747 2285 -1029 23 33 0 0 chr3 159723144 159723174 -58313984 + AT_rich Low_complexity Low_complexity 1 30 0 267 31 0 0 chr3 159723216 159723248 -58313910 + (CA)n Simple_repeat Simple_repeat 2 33 0 819 170 4 25 chr3 159723605 159723879 -58313279 - MLT1A1 LTR MaLR 0 365 1 270 0 0 0 chr3 159724153 159724183 -58312975 + (TG)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr3 159724407 159724429 -58312729 + AT_rich Low_complexity Low_complexity 1 22 0 1927 201 115 12 chr3 159726105 159726618 -58310540 - Cheshire DNA MER1_type -23 2397 1832 457 267 0 0 chr3 159726623 159726724 -58310434 - Cheshire DNA MER1_type -1007 1413 1313 667 281 85 21 chr3 159726782 159727161 -58309997 - LTR16B LTR ERVL 0 464 1 874 357 61 59 chr3 159727244 159728331 -58308827 - HERVL LTR ERVL -313 5341 4253 973 264 72 66 chr3 159728331 159728504 -58308654 - LTR40a LTR ERVL 0 519 348 1544 144 22 38 chr3 159728504 159728823 -58308335 - L1MA7 LINE L1 -2 6289 5976 973 264 72 66 chr3 159728823 159729165 -58307993 - LTR40a LTR ERVL -171 348 1 671 314 52 60 chr3 159729178 159729812 -58307346 - HERVL LTR ERVL -1043 3953 3325 283 326 62 28 chr3 159730361 159730406 -58306752 + L2 LINE L2 2709 2751 -563 2242 51 9 35 chr3 159730406 159730721 -58306437 + L1PA4 LINE L1 5847 6153 -2 283 326 62 28 chr3 159730721 159730819 -58306339 + L2 LINE L2 2751 2857 -457 417 222 19 9 chr3 159730830 159730938 -58306220 + L1MC/D LINE L1 5696 5804 -2004 620 116 51 28 chr3 159730960 159731749 -58305409 + (TA)n Simple_repeat Simple_repeat 1 807 0 311 320 140 13 chr3 159734286 159734514 -58302644 + MLT1L LTR MaLR 355 611 -4 21 71 0 0 chr3 159734572 159734614 -58302544 + AT_rich Low_complexity Low_complexity 1 42 0 211 231 19 0 chr3 159735523 159735575 -58301583 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 297 0 0 0 chr3 159735721 159735754 -58301404 + (TG)n Simple_repeat Simple_repeat 2 34 0 443 242 0 10 chr3 159738491 159738590 -58298568 - MER63 DNA MER1_type -307 755 32 416 300 58 5 chr3 159738597 159738647 -58298511 - MER20B DNA MER1_type -5 214 168 2068 83 37 27 chr3 159738647 159738947 -58298211 + AluSc SINE Alu 1 303 -6 416 300 58 5 chr3 159738947 159739081 -58298077 - MER20B DNA MER1_type -51 168 16 1106 159 23 114 chr3 159739400 159739630 -58297528 + MER33 DNA MER1_type 5 254 -2331 441 0 0 0 chr3 159739630 159739679 -58297479 + (TA)n Simple_repeat Simple_repeat 1 49 0 2415 70 0 0 chr3 159739680 159739982 -58297176 - AluY SINE Alu -9 302 1 1106 159 23 114 chr3 159739982 159740101 -58297057 + MER33 DNA MER1_type 253 324 0 270 317 19 29 chr3 159740101 159740205 -58296953 + MLT1K LTR MaLR 71 173 -415 455 282 117 29 chr3 159740303 159740509 -58296649 + MIR SINE MIR 26 249 -13 1993 160 0 0 chr3 159741085 159741397 -58295761 + AluSx SINE Alu 1 312 0 24 0 0 0 chr3 159742045 159742069 -58295089 + AT_rich Low_complexity Low_complexity 1 24 0 1873 165 13 0 chr3 159743983 159744292 -58292866 - MER7A DNA MER2_type 0 346 36 1910 161 0 16 chr3 159744917 159745265 -58291893 + AluSx SINE Alu 1 343 0 27 29 0 0 chr3 159745736 159745770 -58291388 + AT_rich Low_complexity Low_complexity 1 34 0 185 239 149 30 chr3 159746267 159746334 -58290824 + MER5C DNA MER1_type 18 92 -232 1654 136 4 22 chr3 159747808 159748081 -58289077 + AluSx SINE Alu 35 302 -10 22 80 0 0 chr3 159748354 159748404 -58288754 + AT_rich Low_complexity Low_complexity 1 50 0 237 323 63 24 chr3 159748514 159748641 -58288517 - MIR SINE MIR -15 247 116 409 323 87 41 chr3 159748777 159749146 -58288012 + MLT1J2 LTR MaLR 51 436 -14 203 273 73 0 chr3 159749630 159749685 -58287473 + MIR SINE MIR 77 135 -73 678 275 98 25 chr3 159749697 159749928 -58287230 - MIR SINE MIR 0 262 11 1045 187 0 0 chr3 159749928 159750115 -58287043 - MER5A DNA MER1_type -1 188 2 678 275 98 25 chr3 159750115 159750127 -58287031 - MIR SINE MIR -251 11 1 217 255 0 47 chr3 159750675 159750781 -58286377 + A-rich Low_complexity Low_complexity 3 103 0 203 238 38 0 chr3 159750773 159750853 -58286305 + (TA)n Simple_repeat Simple_repeat 2 84 0 * 218 216 0 20 chr3 159751215 159751266 -58285892 + A-rich Low_complexity Low_complexity 4 53 0 257 354 127 22 chr3 159752011 159752192 -58284966 - MIR SINE MIR -32 230 31 599 148 37 94 chr3 159752402 159752613 -58284545 + L1MB3 LINE L1 5993 6181 -2 201 212 61 0 chr3 159752832 159752898 -58284260 + (TTAA)n Simple_repeat Simple_repeat 4 73 0 964 361 35 18 chr3 159753335 159754050 -58283108 + L1PBb LINE L1 21 887 -6322 232 386 18 31 chr3 159754066 159754294 -58282864 + L1PBb LINE L1 1058 1282 -5927 5800 242 47 64 chr3 159754665 159757176 -58279982 + L1PB4 LINE L1 1166 3888 -3320 2125 111 3 0 chr3 159757176 159757465 -58279693 - AluSx SINE Alu -20 292 3 5800 242 47 64 chr3 159757465 159758709 -58278449 + L1PB4 LINE L1 3888 5151 -2057 3633 183 31 4 chr3 159758702 159759497 -58277661 + L1PB4 LINE L1 5557 6376 -842 * 2458 170 31 19 chr3 159759497 159759984 -58277174 + L1PB4 LINE L1 6719 7211 -7 475 314 66 17 chr3 159761380 159761788 -58275370 + L1MEc LINE L1 1329 1756 -4640 1249 321 82 41 chr3 159761889 159762759 -58274399 + L2 LINE L2 909 1813 -1501 671 253 41 95 chr3 159762788 159763126 -58274032 - L1ME3A LINE L1 -34 6130 5813 1676 308 93 33 chr3 159763126 159763951 -58273207 + L2 LINE L2 1836 2710 -604 4697 193 32 21 chr3 159763951 159765948 -58271210 - L1PA16 LINE L1 -16 6853 4839 * 10533 181 60 21 chr3 159765943 159768887 -58268271 - L1PA16 LINE L1 -3699 3150 9 967 276 106 45 chr3 159769020 159769817 -58267341 - L1ME3A LINE L1 -308 5931 5090 1504 208 0 11 chr3 159770015 159770336 -58266822 - AluJb SINE Alu 0 318 1 867 243 154 21 chr3 159770543 159770979 -58266179 - L1ME3A LINE L1 -3432 2783 2290 348 64 0 0 chr3 159771003 159771037 -58266121 + (CA)n Simple_repeat Simple_repeat 1 81 0 348 64 0 0 chr3 159771037 159771084 -58266074 + (CA)n Simple_repeat Simple_repeat 2 48 0 369 293 34 57 chr3 159771096 159771351 -58265807 - L1ME3A LINE L1 -4081 2315 2069 959 200 56 5 chr3 159771351 159771546 -58265612 - MER3 DNA MER1_type -2 207 3 369 293 34 57 chr3 159771546 159771641 -58265517 - L1ME3A LINE L1 -4327 2069 1973 474 328 32 8 chr3 159771760 159772010 -58265148 - L1ME3A LINE L1 -4594 1802 1547 551 279 43 0 chr3 159772029 159772169 -58264989 - MLT1G1 LTR MaLR -449 146 1 1603 131 0 19 chr3 159772237 159772496 -58264662 - L1PA14 LINE L1 -50 6111 5858 312 100 0 0 chr3 159772496 159772532 -58264626 + L1PA15 LINE L1 6110 6159 -6 333 241 133 0 chr3 159772542 159772625 -58264533 - MIR SINE MIR -122 140 47 277 198 48 24 chr3 159772719 159772845 -58264313 - L1M4 LINE L1 -2852 3294 3166 672 293 58 103 chr3 159772895 159773053 -58264105 + L2 LINE L2 2803 2967 -346 1817 166 49 27 chr3 159773053 159773420 -58263738 - THE1C LTR MaLR 0 375 1 672 293 58 103 chr3 159773420 159773785 -58263373 + L2 LINE L2 2967 3312 -1 27 81 0 0 chr3 159774473 159774535 -58262623 + AT_rich Low_complexity Low_complexity 1 62 0 1432 224 20 14 chr3 159775243 159775591 -58261567 - L1ME1 LINE L1 -5 6161 5812 24 0 0 0 chr3 159776272 159776296 -58260862 + AT_rich Low_complexity Low_complexity 1 24 0 28 29 0 0 chr3 159777786 159777821 -58259337 + AT_rich Low_complexity Low_complexity 1 35 0 28 0 0 0 chr3 159778559 159778587 -58258571 + AT_rich Low_complexity Low_complexity 1 28 0 433 317 108 21 chr3 159779508 159779748 -58257410 + MIR SINE MIR 2 262 0 2490 94 3 25 chr3 159780325 159780688 -58256470 - THE1A LTR MaLR 0 355 1 10778 100 19 15 chr3 159780688 159782261 -58254897 - THE1A-int LTR MaLR 0 1580 1 2546 99 3 6 chr3 159782261 159782615 -58254543 - THE1A LTR MaLR 0 355 3 1875 159 10 0 chr3 159782795 159783096 -58254062 - AluSg SINE Alu -6 304 1 250 331 39 55 chr3 159783286 159783467 -58253691 + LTR40a LTR ERVL 159 336 -183 3375 176 32 84 chr3 159783530 159784383 -58252775 - L1MA7 LINE L1 -7 6284 5477 4594 188 40 7 chr3 159784386 159785327 -58251831 - L1MA6 LINE L1 -1 7718 6747 4450 254 46 33 chr3 159785328 159785518 -58251640 - L1MA6 LINE L1 -2868 4697 4511 198 71 0 0 chr3 159785518 159785546 -58251612 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 4450 254 46 33 chr3 159785546 159788235 -58248923 - L1MA6 LINE L1 -3054 4511 2055 582 172 0 55 chr3 159788470 159788615 -58248543 - L1MA7 LINE L1 -811 5480 5344 1006 197 10 10 chr3 159788615 159788808 -58248350 - MLT2B1 LTR ERVL -327 193 1 2169 164 42 30 chr3 159788809 159789242 -58247916 - ERVL-B1-B2 LTR ERVL -10 5754 5317 5795 179 8 5 chr3 159789242 159790238 -58246920 - ERVL-B1-B2 LTR ERVL -788 4976 3978 * 16275 192 49 26 chr3 159790229 159793454 -58243704 - ERVL-B1-B2 LTR ERVL -2419 3345 48 2164 199 70 38 chr3 159793494 159793992 -58243166 - MLT2B2 LTR ERVL 0 515 2 28 50 0 17 chr3 159794013 159794025 -58243133 + AT_rich Low_complexity Low_complexity 1 12 -47 2156 151 91 20 chr3 159794025 159794423 -58242735 - MSTA LTR MaLR 0 428 3 28 50 0 17 chr3 159794423 159794470 -58242688 + AT_rich Low_complexity Low_complexity 12 59 0 1961 108 3 31 chr3 159794478 159794766 -58242392 - AluSg SINE Alu -30 280 1 286 230 11 46 chr3 159795419 159795506 -58241652 + L2 LINE L2 2223 2306 -1008 480 132 13 0 chr3 159795506 159795582 -58241576 - THE1C LTR MaLR 0 375 299 1989 177 34 25 chr3 159795582 159796138 -58241020 - MLT2A2 LTR ERVL 0 554 1 2077 125 3 10 chr3 159796138 159796443 -58240715 - THE1C LTR MaLR -72 303 1 211 143 24 0 chr3 159796481 159796523 -58240635 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 262 304 71 75 chr3 159796523 159796789 -58240369 + L2 LINE L2 2348 2612 -702 1072 244 85 22 chr3 159796817 159797206 -58239952 - MER74B LTR ERVL -28 540 121 1795 264 11 27 chr3 159797249 159797803 -58239355 + L1PA12 LINE L1 2182 2726 -4855 261 79 66 13 chr3 159797824 159797900 -58239258 + (TA)n Simple_repeat Simple_repeat 2 81 0 1435 217 22 18 chr3 159797900 159798272 -58238886 + L1PA12 LINE L1 2711 3088 -4496 1634 169 76 10 chr3 159798272 159798586 -58238572 + MER1B DNA MER1_type 3 337 0 1435 217 22 18 chr3 159798586 159798642 -58238516 + L1PA12 LINE L1 3088 3142 -4442 298 248 0 67 chr3 159798799 159798904 -58238254 - L1PA12 LINE L1 -5400 2181 2084 1206 332 22 40 chr3 159798991 159799618 -58237540 - L1PA12 LINE L1 -6170 1404 789 244 108 138 15 chr3 159801247 159801312 -58235846 + MADE1 DNA Mariner 1 73 -7 1569 188 7 7 chr3 159802265 159802547 -58234611 - AluJo SINE Alu -25 287 6 22 0 0 0 chr3 159802933 159802955 -58234203 + AT_rich Low_complexity Low_complexity 1 22 0 299 44 22 0 chr3 159803545 159803590 -58233568 + (TG)n Simple_repeat Simple_repeat 2 47 0 188 341 44 0 chr3 159803954 159804045 -58233113 + MIR SINE MIR 72 166 -96 4318 153 24 79 chr3 159804074 159804981 -58232177 - Tigger1 DNA MER2_type 0 2418 1562 3448 173 39 17 chr3 159804978 159805625 -58231533 - Tigger1 DNA MER2_type -1757 661 1 * 30 0 0 0 chr3 159805959 159805989 -58231169 + AT_rich Low_complexity Low_complexity 1 30 0 1299 199 155 6 chr3 159806144 159806460 -58230698 + MLT1A1 LTR MaLR 3 365 0 396 132 0 44 chr3 159806650 159806741 -58230417 + (TTCC)n Simple_repeat Simple_repeat 1 87 0 902 305 70 7 chr3 159806895 159807197 -58229961 - LTR16B LTR ERVL -141 323 3 1263 267 76 44 chr3 159807532 159807731 -58229427 - L1ME LINE L1 -524 5640 5449 466 122 0 0 chr3 159807731 159807813 -58229345 - L1MA4 LINE L1 -5 6295 6214 1263 267 76 44 chr3 159807813 159808882 -58228276 - L1ME LINE L1 -715 5449 4334 214 167 0 0 chr3 159808888 159808924 -58228234 + (CATA)n Simple_repeat Simple_repeat 3 38 0 358 310 41 29 chr3 159808940 159809111 -58228047 - L1ME LINE L1 -1827 4319 4147 241 222 37 0 chr3 159809112 159809166 -58227992 + CT-rich Low_complexity Low_complexity 4 59 0 335 259 132 10 chr3 159809287 159809492 -58227666 - L1ME LINE L1 -2177 3969 3740 400 322 26 13 chr3 159809943 159810095 -58227063 + L2 LINE L2 3160 3313 0 228 122 0 0 chr3 159810206 159810247 -58226911 + (CA)n Simple_repeat Simple_repeat 2 42 0 29 0 0 0 chr3 159811556 159811585 -58225573 + AT_rich Low_complexity Low_complexity 1 29 0 739 355 131 14 chr3 159812099 159812657 -58224501 - L2 LINE L2 -862 2452 1830 26 0 0 0 chr3 159813358 159813384 -58223774 + AT_rich Low_complexity Low_complexity 1 26 0 297 392 23 15 chr3 159813597 159813727 -58223431 - MIR3 SINE MIR -46 162 32 2057 116 27 0 chr3 159813817 159814111 -58223047 + AluSx SINE Alu 2 303 -9 4976 162 49 6 chr3 159815114 159816653 -58220505 - L1MA8 LINE L1 -1 6290 4692 216 402 108 19 chr3 159817132 159817346 -58219812 + MIR SINE MIR 28 260 -2 239 191 15 15 chr3 159817495 159817563 -58219595 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 5403 148 11 8 chr3 159817928 159818907 -58218251 - L1PA15 LINE L1 0 6300 5290 * 5650 109 0 1 chr3 159818885 159819690 -58217468 - L1PA8 LINE L1 -1 6171 5368 1465 134 0 0 chr3 159819688 159819919 -58217239 - L1PA8 LINE L1 -2645 3501 3271 * 3620 175 13 16 chr3 159819917 159820609 -58216549 - L1MA5 LINE L1 -124 6176 5487 2933 170 32 73 chr3 159820617 159821452 -58215706 + L1MA5 LINE L1 4640 5461 -743 279 376 98 0 chr3 159821491 159821624 -58215534 + L2 LINE L2 3127 3272 0 28373 105 11 6 chr3 159823775 159828944 -58208214 + L1PA7 LINE L1 963 6151 -3 198 103 0 0 chr3 159830056 159830085 -58207073 + (T)n Simple_repeat Simple_repeat 1 29 0 23767 27 0 0 chr3 159830096 159833697 -58203461 - L1PA2 LINE L1 -11 6144 2544 550 161 0 0 chr3 159833697 159833790 -58203368 - MSTA LTR MaLR -335 93 1 333 62 0 0 chr3 159833910 159833958 -58203200 + (TG)n Simple_repeat Simple_repeat 2 49 0 574 267 61 24 chr3 159833982 159834229 -58202929 + L1M4 LINE L1 2291 2546 -3600 383 204 42 63 chr3 159834226 159834282 -58202876 - L1MA10 LINE L1 0 6334 6279 * 2306 239 56 49 chr3 159834282 159835080 -58202078 - L1ME1 LINE L1 -44 6917 6114 1258 254 110 16 chr3 159835065 159835699 -58201459 - L1ME1 LINE L1 -2466 4475 3782 * 1761 254 82 10 chr3 159835704 159836385 -58200773 - L1M4 LINE L1 -2332 3814 3085 1248 234 65 15 chr3 159836946 159837348 -58199810 - L1ME1 LINE L1 -5952 471 50 25 0 0 0 chr3 159837389 159837414 -58199744 + AT_rich Low_complexity Low_complexity 1 25 0 1527 196 39 4 chr3 159837414 159837694 -58199464 + AluSx SINE Alu 1 290 -22 667 306 78 26 chr3 159837702 159837836 -58199322 + L1M4 LINE L1 3682 3808 -2338 547 266 8 8 chr3 159837836 159837960 -58199198 - FLAM_A SINE Alu -9 124 1 667 306 78 26 chr3 159837960 159838404 -58198754 + L1M4 LINE L1 3808 4290 -1856 317 198 12 0 chr3 159839830 159839911 -58197247 + (CATATA)n Simple_repeat Simple_repeat 2 83 0 335 230 68 0 chr3 159839911 159839985 -58197173 + Tigger3(Golem) DNA MER2_type 2 80 -2949 576 183 0 0 chr3 159840078 159840171 -58196987 + Tigger3(Golem) DNA MER2_type 2936 3028 -1 22 35 0 0 chr3 159840423 159840452 -58196706 + AT_rich Low_complexity Low_complexity 1 29 0 683 313 82 0 chr3 159841170 159841485 -58195673 - L1P4 LINE L1 -512 5651 5285 387 324 55 61 chr3 159841706 159842033 -58195125 + MLT1J LTR MaLR 97 421 -90 290 342 99 58 chr3 159842088 159842483 -58194675 - L2 LINE L2 -62 3251 2841 2265 89 0 3 chr3 159842703 159842996 -58194162 + AluSg SINE Alu 1 292 -18 282 318 114 15 chr3 159843043 159843175 -58193983 - MER91A DNA MER1_type -51 145 1 207 0 0 0 chr3 159844137 159844160 -58192998 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr3 159846895 159846918 -58190240 + AT_rich Low_complexity Low_complexity 1 23 0 9923 213 13 9 chr3 159847030 159850354 -58186804 - L1PA15 LINE L1 -2 6163 2827 2671 91 3 0 chr3 159851439 159851792 -58185366 - THE1A LTR MaLR -1 354 1 968 157 22 7 chr3 159851854 159852258 -58184900 + CT-rich Low_complexity Low_complexity 1 410 0 246 257 99 10 chr3 159852857 159852958 -58184200 + L1M4 LINE L1 3743 3852 -2294 23 54 0 0 chr3 159853387 159853424 -58183734 + AT_rich Low_complexity Low_complexity 1 37 0 258 354 91 11 chr3 159854796 159854971 -58182187 + MIR3 SINE MIR 19 207 -1 354 297 64 81 chr3 159855215 159855564 -58181594 + MLT1I LTR MaLR 71 409 0 2460 49 7 0 chr3 159855684 159855990 -58181168 - AluY SINE Alu -3 308 1 1540 150 274 3 chr3 159856274 159856614 -58180544 + MSTB1 LTR MaLR 1 432 0 1148 172 10 0 chr3 159856698 159856902 -58180256 + L1MB1 LINE L1 5893 6098 -70 21 0 0 0 chr3 159857243 159857264 -58179894 + AT_rich Low_complexity Low_complexity 1 21 0 380 206 0 76 chr3 159857873 159857920 -58179238 - Tigger5 DNA MER2_type 0 2323 2285 1593 209 50 19 chr3 159857920 159858337 -58178821 - MSTB1 LTR MaLR 0 432 3 380 206 0 76 chr3 159858337 159858381 -58178777 - Tigger5 DNA MER2_type -38 2285 2239 464 191 0 12 chr3 159858394 159858478 -58178680 + Tigger5 DNA MER2_type 1 83 -2240 1314 245 45 45 chr3 159858838 159859234 -58177924 - MSTD LTR MaLR 0 396 1 26 0 0 0 chr3 159859541 159859567 -58177591 + AT_rich Low_complexity Low_complexity 1 26 0 485 264 57 0 chr3 159859827 159859933 -58177225 - FAM SINE Alu -68 117 6 26 0 0 0 chr3 159860384 159860410 -58176748 + AT_rich Low_complexity Low_complexity 1 26 0 726 222 156 26 chr3 159860488 159860790 -58176368 + Charlie7 DNA MER1_type 320 660 -1952 367 235 119 51 chr3 159860826 159861179 -58175979 + Charlie7 DNA MER1_type 2207 2583 -29 184 389 28 0 chr3 159861282 159861354 -58175804 - MIR SINE MIR -185 77 4 214 302 179 0 chr3 159862794 159862900 -58174258 + L2 LINE L2 3189 3313 0 22 0 0 0 chr3 159864783 159864805 -58172353 + AT_rich Low_complexity Low_complexity 1 22 0 264 309 56 24 chr3 159866717 159866843 -58170315 + MIR SINE MIR 120 249 -13 953 204 138 34 chr3 159867202 159867471 -58169687 + AluJo SINE Alu 11 307 -5 182 326 76 30 chr3 159867786 159867918 -58169240 - L2 LINE L2 -189 3083 2946 252 180 0 0 chr3 159867971 159868021 -58169137 + L2 LINE L2 3264 3313 0 269 288 0 0 chr3 159868407 159868466 -58168692 + LTR33A LTR ERVL 130 188 -335 266 282 117 0 chr3 159869020 159869123 -58168035 - MLT1L LTR MaLR -326 289 175 230 321 12 0 chr3 159869382 159869463 -58167695 - MIR SINE MIR -120 142 61 3178 141 172 70 chr3 159869490 159870853 -58166305 + pTR5 LTR ERV1 743 2606 0 211 354 71 35 chr3 159871564 159871762 -58165396 - L3 LINE CR1 -3 1574 1370 208 309 72 21 chr3 159871955 159872052 -58165106 - L3 LINE CR1 -382 1195 1094 364 259 58 36 chr3 159872091 159872191 -58164967 - MIR SINE MIR 0 262 157 2031 206 25 21 chr3 159872191 159872661 -58164497 - MER70A LTR ERVL 0 472 1 364 259 58 36 chr3 159872661 159872699 -58164459 - MIR SINE MIR -105 157 121 230 241 52 0 chr3 159875130 159875188 -58161970 + L2 LINE L2 3187 3247 -66 1943 116 17 7 chr3 159876508 159876800 -58160358 - AluSg SINE Alu -10 300 6 3019 133 43 0 chr3 159880260 159880749 -58156409 - MER41E LTR ERV1 0 512 3 22 35 0 0 chr3 159882629 159882658 -58154500 + AT_rich Low_complexity Low_complexity 1 29 0 4297 161 29 8 chr3 159883639 159884430 -58152728 - L1PA16 LINE L1 -2 6164 5357 26 50 0 0 chr3 159886873 159886913 -58150245 + AT_rich Low_complexity Low_complexity 1 40 0 434 266 30 52 chr3 159887022 159887289 -58149869 - L1M4 LINE L1 -653 5511 5258 203 313 30 50 chr3 159887644 159887743 -58149415 + MER5A DNA MER1_type 43 139 -50 2457 57 0 13 chr3 159887745 159888059 -58149099 + AluY SINE Alu 1 310 -1 2409 53 0 3 chr3 159888885 159889189 -58147969 + AluY SINE Alu 1 303 -8 1744 127 0 86 chr3 159889391 159889705 -58147453 - AluSx SINE Alu -25 287 1 2416 25 11 0 chr3 159889909 159890188 -58146970 - AluYa5 SINE Alu -3 308 27 2216 91 19 3 chr3 159890214 159890521 -58146637 - AluSx SINE Alu 0 312 1 379 268 9 9 chr3 159890729 159890841 -58146317 - L2 LINE L2 -1005 2309 2198 333 0 0 0 chr3 159890842 159890879 -58146279 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 22 35 0 0 chr3 159891116 159891145 -58146013 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 159891868 159891890 -58145268 + AT_rich Low_complexity Low_complexity 1 22 0 365 290 94 53 chr3 159892224 159892469 -58144689 - L1MC4a LINE L1 -1888 5920 5666 242 333 0 0 chr3 159892917 159893001 -58144157 + (TATATG)n Simple_repeat Simple_repeat 5 88 0 1607 249 10 73 chr3 159893002 159893252 -58143906 - MLT2B1 LTR ERVL -40 480 277 1627 76 0 21 chr3 159893252 159893489 -58143669 + L1PA5 LINE L1 5922 6153 -1 1607 249 10 73 chr3 159893489 159893745 -58143413 - MLT2B1 LTR ERVL -243 277 6 487 278 59 28 chr3 159893770 159894058 -58143100 - L1M4 LINE L1 -3636 2510 2214 547 318 86 5 chr3 159894314 159894534 -58142624 + MIR SINE MIR 20 257 -5 479 320 127 32 chr3 159894791 159895339 -58141819 - L1ME3 LINE L1 -248 6308 5707 729 315 99 56 chr3 159895342 159896443 -58140715 - L1ME3 LINE L1 -840 5700 4553 320 321 14 66 chr3 159896456 159896743 -58140415 - L1ME3 LINE L1 -2012 4528 4257 313 318 88 24 chr3 159896926 159897435 -58139723 - L1ME3 LINE L1 -2694 3846 3305 26 30 0 0 chr3 159897458 159897491 -58139667 + AT_rich Low_complexity Low_complexity 1 33 0 581 76 0 0 chr3 159897985 159898064 -58139094 - MADE1 DNA Mariner -1 79 1 326 309 144 0 chr3 159898459 159898653 -58138505 - L1ME3 LINE L1 -4602 1938 1717 440 202 5 13 chr3 159898654 159898764 -58138394 - L1MA9 LINE L1 -103 6200 6078 2261 89 0 0 chr3 159902848 159903139 -58134019 + AluSc SINE Alu 5 295 -14 22 35 0 0 chr3 159904191 159904220 -58132938 + AT_rich Low_complexity Low_complexity 1 29 0 1488 71 0 5 chr3 159904577 159904774 -58132384 - AluY SINE Alu -6 305 110 234 0 0 0 chr3 159905133 159905159 -58131999 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 186 143 0 0 chr3 159905776 159905811 -58131347 + (GA)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr3 159907407 159907428 -58129730 + AT_rich Low_complexity Low_complexity 1 21 0 2218 103 0 10 chr3 159907689 159908001 -58129157 - AluY SINE Alu -2 309 1 2638 110 86 6 chr3 159908642 159909066 -58128092 + MER1A DNA MER1_type 25 529 0 25 0 0 0 chr3 159909428 159909453 -58127705 + AT_rich Low_complexity Low_complexity 1 25 0 348 24 0 0 chr3 159910018 159910059 -58127099 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1152 134 0 0 chr3 159910062 159910226 -58126932 - AluSg/x SINE Alu -30 282 119 301 236 0 0 chr3 159910228 159910283 -58126875 + AluS SINE Alu 12 66 -234 24 0 0 0 chr3 159912598 159912622 -58124536 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr3 159913541 159913563 -58123595 + AT_rich Low_complexity Low_complexity 1 22 0 414 0 0 0 chr3 159914300 159914346 -58122812 + (CA)n Simple_repeat Simple_repeat 2 47 0 22 35 0 0 chr3 159914476 159914505 -58122653 + AT_rich Low_complexity Low_complexity 1 29 0 29 28 0 0 chr3 159915495 159915531 -58121627 + AT_rich Low_complexity Low_complexity 1 36 0 28 61 0 0 chr3 159916826 159916875 -58120283 + AT_rich Low_complexity Low_complexity 1 49 0 400 296 9 0 chr3 159917412 159917520 -58119638 + MIR SINE MIR 8 116 -146 231 336 48 20 chr3 159917649 159917795 -58119363 - L2 LINE L2 -212 3060 2911 23 68 0 0 chr3 159918720 159918764 -58118394 + AT_rich Low_complexity Low_complexity 1 44 0 200 196 0 0 chr3 159919427 159919473 -58117685 + (CA)n Simple_repeat Simple_repeat 2 47 0 460 259 9 0 chr3 159919477 159919589 -58117569 + HAL1 LINE L1 1463 1575 -932 240 204 19 0 chr3 159919709 159919763 -58117395 + L1MC4 LINE L1 6649 6703 -1339 437 309 65 6 chr3 159919809 159919977 -58117181 + MLT1D LTR MaLR 1 178 -417 331 316 110 55 chr3 159920002 159920570 -58116588 + L1ME LINE L1 5155 5751 -370 25 0 0 0 chr3 159920856 159920881 -58116277 + AT_rich Low_complexity Low_complexity 1 25 0 514 290 155 30 chr3 159920984 159921184 -58115974 - MLT1G1 LTR MaLR -85 510 286 402 261 124 21 chr3 159921451 159921692 -58115466 + L1ME LINE L1 520 785 -5285 826 170 7 19 chr3 159921812 159921957 -58115201 + MLT1D LTR MaLR 251 333 -57 614 367 85 18 chr3 159921957 159922516 -58114642 - L2 LINE L2 -294 3019 2427 239 365 0 12 chr3 159922544 159922629 -58114529 - MIR SINE MIR -177 85 2 339 136 0 0 chr3 159922666 159922725 -58114433 + (A)n Simple_repeat Simple_repeat 1 59 0 324 333 7 30 chr3 159922939 159923074 -58114084 + MIR SINE MIR 21 152 -110 21 0 0 0 chr3 159923206 159923227 -58113931 + AT_rich Low_complexity Low_complexity 1 21 0 442 329 55 84 chr3 159923338 159923827 -58113331 - L1MC4a LINE L1 -1897 5911 5437 22 56 0 0 chr3 159924058 159924094 -58113064 + AT_rich Low_complexity Low_complexity 1 36 0 277 290 6 12 chr3 159924324 159924454 -58112704 - L1MC4a LINE L1 -1306 4840 4713 31 68 0 0 chr3 159926641 159926700 -58110458 + AT_rich Low_complexity Low_complexity 1 59 0 2084 103 0 26 chr3 159928294 159928604 -58108554 + AluSx SINE Alu 5 306 -6 250 315 144 0 chr3 159928682 159928793 -58108365 - L2 LINE L2 0 3272 3146 413 272 47 18 chr3 159928813 159929089 -58108069 + L1ME3A LINE L1 4324 4607 -1539 442 356 64 18 chr3 159929111 159929392 -58107766 + L1ME3A LINE L1 5627 5920 -250 303 378 34 7 chr3 159929669 159929817 -58107341 - L2 LINE L2 -1304 2010 1859 2020 183 22 93 chr3 159929842 159930306 -58106852 - MLT1C-int LTR MaLR -4 1367 937 2096 235 27 26 chr3 159930526 159931295 -58105863 - MLT1C-int LTR MaLR -484 887 1 1278 243 109 6 chr3 159931295 159931700 -58105458 - MLT1C LTR MaLR 0 467 26 334 323 0 50 chr3 159934312 159934482 -58102676 + MER5B DNA MER1_type 8 158 -20 685 258 96 5 chr3 159934529 159934727 -58102431 + MIR SINE MIR 32 247 -15 4828 193 21 4 chr3 159934751 159936448 -58100710 + L1PB4 LINE L1 4426 6145 -11 24 32 0 0 chr3 159936448 159936479 -58100679 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr3 159937816 159937845 -58099313 + AT_rich Low_complexity Low_complexity 1 29 0 25 65 0 0 chr3 159937955 159938001 -58099157 + AT_rich Low_complexity Low_complexity 1 46 0 410 311 58 21 chr3 159938926 159939116 -58098042 - L2 LINE L2 -4 3309 3113 917 351 51 29 chr3 159939366 159939915 -58097243 - L2 LINE L2 -609 2705 2145 204 93 37 37 chr3 159939944 159939998 -58097160 + A-rich Low_complexity Low_complexity 1 54 0 23 33 0 0 chr3 159941260 159941290 -58095868 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr3 159941670 159941698 -58095460 + AT_rich Low_complexity Low_complexity 1 28 0 578 334 22 7 chr3 159942692 159942901 -58094257 - MIR SINE MIR -35 227 16 1429 241 93 4 chr3 159943151 159943644 -58093514 + L1M4 LINE L1 3937 4473 -1673 231 222 62 0 chr3 159943634 159943715 -58093443 + L1MB8 LINE L1 6081 6166 -12 * 2107 87 0 58 chr3 159944205 159944516 -58092642 - AluSc SINE Alu -16 293 1 217 231 13 26 chr3 159944591 159944669 -58092489 + (TAAA)n Simple_repeat Simple_repeat 1 77 0 486 258 89 21 chr3 159944700 159944890 -58092268 - LTR67 LTR ERVL -7 550 348 22 0 0 0 chr3 159945453 159945475 -58091683 + AT_rich Low_complexity Low_complexity 1 22 0 424 306 35 29 chr3 159946621 159946791 -58090367 + MIR SINE MIR 92 262 0 209 319 66 0 chr3 159946897 159946988 -58090170 - MIR SINE MIR -109 153 57 1235 280 88 20 chr3 159947209 159947616 -58089542 + MLT1J LTR MaLR 19 453 -58 35 54 0 0 chr3 159947967 159948023 -58089135 + AT_rich Low_complexity Low_complexity 1 56 0 395 192 17 17 chr3 159948633 159948753 -58088405 + GA-rich Low_complexity Low_complexity 1 120 0 2024 106 0 3 chr3 159949837 159950140 -58087018 - AluSc SINE Alu 0 302 1 207 259 17 0 chr3 159950320 159950378 -58086780 + GA-rich Low_complexity Low_complexity 3 61 0 407 341 85 52 chr3 159951000 159951583 -58085575 - L2 LINE L2 -4 3309 2703 1934 117 33 0 chr3 159952395 159952668 -58084490 + AluSx SINE Alu 1 282 -30 186 43 0 0 chr3 159952671 159952694 -58084464 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 491 255 30 0 chr3 159953229 159953341 -58083817 + MIR3 SINE MIR 58 173 -35 351 282 51 0 chr3 159953510 159953616 -58083542 - MIR SINE MIR -45 163 43 2172 82 0 4 chr3 159954261 159954560 -58082598 - AluSc SINE Alu 0 298 1 1682 168 37 63 chr3 159954726 159955107 -58082051 - MLT1B LTR MaLR -19 371 1 1639 250 22 22 chr3 159957936 159958396 -58078762 + MLT1C LTR MaLR 8 467 0 945 71 0 0 chr3 159958728 159958854 -58078304 + (ATG)n Simple_repeat Simple_repeat 2 127 0 416 361 50 15 chr3 159959156 159959358 -58077800 + L2 LINE L2 271 479 -2835 1513 173 50 4 chr3 159959590 159959751 -58077407 - AluJo SINE Alu -19 293 114 396 0 0 0 chr3 159959751 159959795 -58077363 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 1513 173 50 4 chr3 159959795 159959893 -58077265 - AluJo SINE Alu -198 114 22 593 167 0 0 chr3 159959893 159959989 -58077169 - FLAM_C SINE Alu -35 108 13 1490 229 48 25 chr3 159960112 159960465 -58076693 + MLT1E LTR MaLR 226 586 -7 609 245 39 0 chr3 159961306 159961461 -58075697 + MIR SINE MIR 92 252 -10 200 335 51 44 chr3 159961529 159961687 -58075471 - MIR SINE MIR -56 206 48 252 0 0 0 chr3 159961848 159961876 -58075282 + (TG)n Simple_repeat Simple_repeat 2 29 0 230 203 0 16 chr3 159961895 159961959 -58075199 + C-rich Low_complexity Low_complexity 4 66 0 936 58 29 22 chr3 159962076 159962214 -58074944 - THE1C-int LTR MaLR -1441 139 1 1488 173 38 91 chr3 159962214 159962608 -58074550 - THE1C LTR MaLR 0 375 3 1437 221 7 3 chr3 159962634 159962937 -58074221 - AluJb SINE Alu -6 306 3 912 216 92 61 chr3 159962990 159963318 -58073840 + MER2 DNA MER2_type 1 338 -7 2160 84 20 3 chr3 159963388 159963684 -58073474 + AluY SINE Alu 7 307 -4 213 283 0 0 chr3 159963773 159963819 -58073339 + polypyrimidine Low_complexity Low_complexity 1 46 0 509 329 97 55 chr3 159963822 159963983 -58073175 - HAL1 LINE L1 -1320 1187 1034 2223 101 0 3 chr3 159963983 159964280 -58072878 + AluSc SINE Alu 1 296 -13 509 329 97 55 chr3 159964280 159964632 -58072526 - HAL1 LINE L1 -1473 1034 652 2223 149 22 0 chr3 159964954 159965310 -58071848 - THE1B LTR MaLR 0 364 1 9826 119 22 36 chr3 159965310 159966912 -58070246 - THE1B-int LTR MaLR 0 1580 1 2097 152 22 19 chr3 159966913 159967274 -58069884 - THE1B LTR MaLR -2 362 1 183 80 0 0 chr3 159967396 159967421 -58069737 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1219 205 33 56 chr3 159967849 159968152 -58069006 + AluJo SINE Alu 4 299 -3 23 54 0 0 chr3 159969018 159969055 -58068103 + AT_rich Low_complexity Low_complexity 1 37 0 724 86 0 0 chr3 159970414 159970507 -58066651 + U6 snRNA snRNA 1 93 -14 187 258 41 103 chr3 159970633 159970657 -58066501 - L2 LINE L2 -602 2712 2688 1724 138 24 17 chr3 159970657 159970808 -58066350 + AluSc SINE Alu 1 149 -160 212 0 36 0 chr3 159970808 159970836 -58066322 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1724 138 24 17 chr3 159970836 159970981 -58066177 + AluSc SINE Alu 149 299 -10 187 258 41 103 chr3 159970981 159971053 -58066105 - L2 LINE L2 -626 2688 2622 408 319 171 20 chr3 159971739 159972188 -58064970 + L2 LINE L2 1876 2392 -922 21 0 0 0 chr3 159972640 159972661 -58064497 + AT_rich Low_complexity Low_complexity 1 21 0 180 77 0 0 chr3 159972996 159973022 -58064136 + (CATTT)n Simple_repeat Simple_repeat 2 27 0 411 321 180 36 chr3 159973153 159973626 -58063532 - L1MC/D LINE L1 -2010 5798 5258 409 317 48 61 chr3 159973823 159974217 -58062941 - MLT1J LTR MaLR -19 492 104 264 59 0 0 chr3 159975169 159975203 -58061955 + (TC)n Simple_repeat Simple_repeat 1 34 0 368 374 0 28 chr3 159975887 159976066 -58061092 - MER5B DNA MER1_type -1 177 4 22 0 0 0 chr3 159977017 159977039 -58060119 + AT_rich Low_complexity Low_complexity 1 22 0 204 289 0 13 chr3 159977508 159977584 -58059574 + MIR SINE MIR 79 153 -109 24 32 0 0 chr3 159977764 159977795 -58059363 + AT_rich Low_complexity Low_complexity 1 31 0 28 91 0 0 chr3 159977911 159977988 -58059170 + AT_rich Low_complexity Low_complexity 1 77 0 462 309 48 61 chr3 159979265 159979401 -58057757 + L2 LINE L2 2805 2938 -375 2090 108 10 3 chr3 159979401 159979706 -58057452 - AluSx SINE Alu -2 310 4 462 309 48 61 chr3 159979706 159979799 -58057359 + L2 LINE L2 2938 3031 -282 475 316 14 0 chr3 159980304 159980443 -58056715 + L2 LINE L2 3164 3304 -9 299 340 40 0 chr3 159980451 159980551 -58056607 + L2 LINE L2 3169 3272 0 1004 100 74 16 chr3 159980571 159980761 -58056397 + L1MA8 LINE L1 6081 6281 -10 353 301 30 8 chr3 159980923 159981056 -58056102 + L2 LINE L2 2283 2418 -896 3397 139 29 18 chr3 159981082 159982057 -58055101 + MER61E LTR ERV1 3 617 -62 21 0 0 0 chr3 159982251 159982272 -58054886 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr3 159984799 159984834 -58052324 + AT_rich Low_complexity Low_complexity 1 35 0 302 296 197 7 chr3 159986032 159986184 -58050974 - MER5A DNA MER1_type 0 189 9 336 176 0 0 chr3 159986789 159986857 -58050301 + (TA)n Simple_repeat Simple_repeat 2 69 0 1224 197 72 102 chr3 159987037 159987136 -58050022 + L1MC4 LINE L1 7466 7566 -476 2236 113 0 6 chr3 159987136 159987447 -58049711 + AluSg SINE Alu 1 309 -1 1224 197 72 102 chr3 159987447 159987505 -58049653 + L1MC4 LINE L1 7566 7624 -418 183 80 0 0 chr3 159987505 159987530 -58049628 + (CA)n Simple_repeat Simple_repeat 1 25 0 1224 197 72 102 chr3 159987530 159987803 -58049355 + L1MC4 LINE L1 7624 7884 -158 30 27 0 0 chr3 159989240 159989277 -58047881 + AT_rich Low_complexity Low_complexity 1 37 0 222 62 0 0 chr3 159989935 159989967 -58047191 + (T)n Simple_repeat Simple_repeat 1 32 0 22 35 0 0 chr3 159990364 159990393 -58046765 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr3 159990442 159990472 -58046686 + AT_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr3 159992343 159992376 -58044782 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr3 159993099 159993127 -58044031 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr3 159993937 159993981 -58043177 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr3 159994199 159994220 -58042938 + AT_rich Low_complexity Low_complexity 1 21 0 1319 190 71 24 chr3 159994284 159994579 -58042579 + AluJb SINE Alu 1 309 -3 1988 148 0 7 chr3 159995134 159995439 -58041719 - AluSx SINE Alu -9 303 1 509 269 82 22 chr3 159996158 159996340 -58040818 - MIR SINE MIR 0 262 70 23 0 0 0 chr3 159996765 159996788 -58040370 + AT_rich Low_complexity Low_complexity 1 23 0 31 0 0 0 chr3 159997101 159997132 -58040026 + AT_rich Low_complexity Low_complexity 1 31 0 1560 182 54 3 chr3 159998614 159998910 -58038248 - AluJb SINE Alu 0 312 2 29 70 0 0 chr3 159999056 159999113 -58038045 + AT_rich Low_complexity Low_complexity 1 57 0 333 196 19 9 chr3 159999667 159999774 -58037384 + (TA)n Simple_repeat Simple_repeat 2 109 0 214 222 26 7 chr3 159999808 159999961 -58037197 + (TA)n Simple_repeat Simple_repeat 1 156 0 186 291 0 18 chr3 160000447 160000502 -58036656 + L3 LINE CR1 1240 1293 -284 244 365 0 0 chr3 160000762 160000836 -58036322 + L3 LINE CR1 1399 1472 -105 185 160 0 20 chr3 160000836 160000886 -58036272 + (TTCA)n Simple_repeat Simple_repeat 3 51 0 525 231 86 72 chr3 160001354 160001575 -58035583 + L1ME3 LINE L1 5938 6161 -1 1066 118 0 12 chr3 160003565 160003734 -58033424 + L1MA1 LINE L1 6132 6298 -4 32 0 0 0 chr3 160003734 160003766 -58033392 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr3 160004752 160004788 -58032370 + AT_rich Low_complexity Low_complexity 1 36 0 3858 36 4 0 chr3 160005383 160005854 -58031304 - L1PA5 LINE L1 -5 6149 5677 3523 45 0 0 chr3 160005854 160006366 -58030792 + L1PA5 LINE L1 5168 5679 -475 291 140 0 0 chr3 160007805 160007855 -58029303 + (CATA)n Simple_repeat Simple_repeat 3 52 0 538 281 139 26 chr3 160007935 160008301 -58028857 - L1MC4a LINE L1 -361 5801 5481 23 36 0 54 chr3 160008678 160008734 -58028424 + AT_rich Low_complexity Low_complexity 1 53 0 253 259 0 0 chr3 160008928 160008982 -58028176 - L2 LINE L2 0 3272 3219 22 0 0 0 chr3 160009068 160009090 -58028068 + AT_rich Low_complexity Low_complexity 1 22 0 215 273 0 0 chr3 160009913 160009957 -58027201 + polypurine Low_complexity Low_complexity 1 44 0 309 246 0 0 chr3 160010818 160010887 -58026271 + L1MC4 LINE L1 6636 6704 -1338 189 0 0 0 chr3 160010888 160010909 -58026249 + (TA)n Simple_repeat Simple_repeat 1 21 0 1503 198 33 0 chr3 160010909 160011182 -58025976 - AluJb SINE Alu -26 286 5 191 362 94 79 chr3 160011519 160011837 -58025321 - L2 LINE L2 -8 3264 2942 594 191 26 0 chr3 160012123 160012275 -58024883 - Charlie5 DNA MER1_type -27 2585 2430 362 157 11 79 chr3 160012248 160012337 -58024821 - Charlie5 DNA MER1_type -2523 89 7 * 29 0 0 0 chr3 160012455 160012484 -58024674 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 160012532 160012554 -58024604 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr3 160012633 160012671 -58024487 + AT_rich Low_complexity Low_complexity 1 38 0 893 324 72 15 chr3 160012738 160013213 -58023945 + L1ME3A LINE L1 5436 5937 -233 243 271 0 0 chr3 160013726 160013785 -58023373 + L2 LINE L2 603 661 -2653 4642 158 79 35 chr3 160013851 160014816 -58022342 + Tigger1 DNA MER2_type 54 1060 -1358 5086 130 55 17 chr3 160014817 160015685 -58021473 + Tigger1 DNA MER2_type 1518 2418 0 3873 281 145 40 chr3 160015689 160016590 -58020568 + L2 LINE L2 663 1468 -1846 1736 104 22 4 chr3 160016590 160016858 -58020300 - L1MA1 LINE L1 -15 6287 6015 3873 281 145 40 chr3 160016858 160017792 -58019366 + L2 LINE L2 1468 2690 -624 719 279 67 7 chr3 160018432 160018715 -58018443 - HAL1b LINE L1 -738 610 311 193 164 18 18 chr3 160019226 160019281 -58017877 + CT-rich Low_complexity Low_complexity 2 56 0 249 33 0 0 chr3 160019996 160020026 -58017132 + (TTC)n Simple_repeat Simple_repeat 2 31 0 225 0 0 0 chr3 160021378 160021403 -58015755 + (CA)n Simple_repeat Simple_repeat 2 26 0 2229 60 0 11 chr3 160022062 160022394 -58014764 - AluY SINE Alu 0 329 1 645 270 29 11 chr3 160022756 160022930 -58014228 - LTR33 LTR ERVL -307 214 38 23 33 0 0 chr3 160023445 160023475 -58013683 + AT_rich Low_complexity Low_complexity 1 30 0 240 59 0 0 chr3 160023605 160023639 -58013519 + (CA)n Simple_repeat Simple_repeat 1 34 0 313 123 77 0 chr3 160024579 160024644 -58012514 - L1MA1 LINE L1 -196 6106 6037 645 87 325 0 chr3 160024655 160024781 -58012377 + L1MA3 LINE L1 6139 6305 0 22 0 0 0 chr3 160025034 160025056 -58012102 + AT_rich Low_complexity Low_complexity 1 22 0 350 323 104 67 chr3 160025674 160026194 -58010964 + L2 LINE L2 1747 2285 -1029 23 33 0 0 chr3 160026194 160026224 -58010934 + AT_rich Low_complexity Low_complexity 1 30 0 267 31 0 0 chr3 160026266 160026298 -58010860 + (CA)n Simple_repeat Simple_repeat 2 33 0 818 167 4 25 chr3 160026655 160026929 -58010229 - MLT1A1 LTR MaLR 0 365 1 270 0 0 0 chr3 160027204 160027234 -58009924 + (TG)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr3 160027458 160027480 -58009678 + AT_rich Low_complexity Low_complexity 1 22 0 1967 203 115 12 chr3 160029156 160029669 -58007489 - Cheshire DNA MER1_type -23 2397 1832 442 277 0 0 chr3 160029674 160029775 -58007383 - Cheshire DNA MER1_type -1007 1413 1313 662 281 85 21 chr3 160029833 160030212 -58006946 - LTR16B LTR ERVL 0 464 1 899 356 62 60 chr3 160030295 160031382 -58005776 - HERVL LTR ERVL -313 5341 4253 993 273 66 60 chr3 160031382 160031555 -58005603 - LTR40a LTR ERVL 0 519 348 1566 141 22 38 chr3 160031555 160031874 -58005284 - L1MA7 LINE L1 -2 6289 5976 993 273 66 60 chr3 160031874 160032216 -58004942 - LTR40a LTR ERVL -171 348 1 687 306 55 63 chr3 160032229 160032863 -58004295 - HERVL LTR ERVL -1043 3953 3325 284 326 62 28 chr3 160033412 160033457 -58003701 + L2 LINE L2 2709 2751 -563 2227 51 9 35 chr3 160033457 160033772 -58003386 + L1PA4 LINE L1 5847 6153 -2 284 326 62 28 chr3 160033772 160033870 -58003288 + L2 LINE L2 2751 2857 -457 426 222 19 9 chr3 160033881 160033989 -58003169 + L1MC/D LINE L1 5696 5804 -2004 620 112 54 26 chr3 160034011 160034796 -58002362 + (TA)n Simple_repeat Simple_repeat 1 807 0 12255 209 24 37 chr3 160036872 160038360 -57998798 - L1PA16 LINE L1 -2 7602 6096 1955 127 6 22 chr3 160038360 160038676 -57998482 + AluSq SINE Alu 1 311 -2 12255 209 24 37 chr3 160038676 160039622 -57997536 - L1PA16 LINE L1 -1508 6096 5139 239 71 24 0 chr3 160039622 160039664 -57997494 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 12255 209 24 37 chr3 160039664 160040990 -57996168 - L1PA16 LINE L1 -2465 5139 3797 2082 139 131 8 chr3 160040990 160041371 -57995787 + MSTA LTR MaLR 1 428 0 12255 209 24 37 chr3 160041371 160042342 -57994816 - L1PA16 LINE L1 -3807 3797 2939 2233 77 7 17 chr3 160042342 160042641 -57994517 + AluY SINE Alu 1 296 -15 12255 209 24 37 chr3 160042641 160043474 -57993684 - L1PA16 LINE L1 -4665 2939 2096 234 344 63 44 chr3 160043546 160043816 -57993342 - L1M2 LINE L1 -5782 1067 793 743 323 39 28 chr3 160043954 160044597 -57992561 - L1PA16 LINE L1 -5502 2079 183 207 0 0 0 chr3 160044721 160044744 -57992414 + (TG)n Simple_repeat Simple_repeat 2 24 0 25 51 0 0 chr3 160045377 160045416 -57991742 + AT_rich Low_complexity Low_complexity 1 39 0 314 279 23 0 chr3 160047376 160047462 -57989696 - L2 LINE L2 0 3313 3226 334 312 84 69 chr3 160047622 160047968 -57989190 + HAL1b LINE L1 317 667 -681 21 0 0 0 chr3 160048708 160048729 -57988429 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr3 160049309 160049357 -57987801 + AT_rich Low_complexity Low_complexity 1 48 0 281 333 13 53 chr3 160049676 160049826 -57987332 + L2 LINE L2 2914 3057 -215 1187 274 136 33 chr3 160049892 160049932 -57987226 - HsTC2a DNA Tc2 -1156 744 710 261 0 0 0 chr3 160049932 160049961 -57987197 + (TTTTA)n Simple_repeat Simple_repeat 5 33 0 1187 274 136 33 chr3 160049961 160050591 -57986567 - HsTC2a DNA Tc2 -1190 710 5 659 288 0 6 chr3 160050608 160050778 -57986380 - MIR SINE MIR -31 231 63 1828 237 101 12 chr3 160051418 160051983 -57985175 - L1ME3A LINE L1 -1 6169 5555 214 340 85 0 chr3 160052200 160052306 -57984852 - MIR SINE MIR -99 163 49 2314 103 0 0 chr3 160052310 160052612 -57984546 - AluSx SINE Alu -10 302 1 228 67 0 0 chr3 160054238 160054268 -57982890 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 21 0 0 0 chr3 160056237 160056258 -57980900 + AT_rich Low_complexity Low_complexity 1 21 0 1209 180 8 0 chr3 160056261 160056505 -57980653 - L1MA8 LINE L1 -1 6290 6045 322 71 0 0 chr3 160056506 160056548 -57980610 - L1MA8 LINE L1 -311 5980 5939 246 128 21 0 chr3 160056819 160056866 -57980292 - Alu SINE Alu -2 306 259 257 156 0 0 chr3 160057978 160058023 -57979135 + Alu SINE Alu 259 303 -5 365 104 20 0 chr3 160058295 160058397 -57978761 + L1MA8 LINE L1 5939 6105 -186 200 217 0 0 chr3 160058419 160058465 -57978693 + A-rich Low_complexity Low_complexity 4 49 0 298 356 62 42 chr3 160059161 160059498 -57977660 - L2 LINE L2 -358 2956 2613 227 170 38 0 chr3 160060121 160060174 -57976984 + (TA)n Simple_repeat Simple_repeat 1 55 0 201 188 21 10 chr3 160060203 160060299 -57976859 + (TA)n Simple_repeat Simple_repeat 2 98 0 546 204 0 29 chr3 160060301 160060404 -57976754 - FLAM_A SINE Alu -26 116 17 1592 201 35 35 chr3 160060445 160060793 -57976365 + L1MDa LINE L1 19 366 -6174 189 107 0 0 chr3 160060855 160060883 -57976275 + (TG)n Simple_repeat Simple_repeat 1 28 0 415 104 30 0 chr3 160061052 160061119 -57976039 - MSTA LTR MaLR 0 428 360 696 236 27 0 chr3 160061227 160061375 -57975783 - MSTB LTR MaLR -274 152 1 23 33 0 0 chr3 160061935 160061965 -57975193 + AT_rich Low_complexity Low_complexity 1 30 0 197 295 51 0 chr3 160062297 160062375 -57974783 - MIR SINE MIR -96 166 85 21 0 0 0 chr3 160062580 160062601 -57974557 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr3 160063728 160063758 -57973400 + AT_rich Low_complexity Low_complexity 1 30 0 207 0 0 0 chr3 160066150 160066173 -57970985 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 234 0 0 0 chr3 160066172 160066198 -57970960 + (CA)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr3 160066895 160066916 -57970242 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr3 160067140 160067160 -57969998 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 22 0 0 0 chr3 160067957 160067979 -57969179 + AT_rich Low_complexity Low_complexity 1 22 0 46 0 0 0 chr3 160067986 160068032 -57969126 + AT_rich Low_complexity Low_complexity 1 46 0 516 383 13 4 chr3 160069706 160069941 -57967217 - MIR SINE MIR 0 262 26 2263 90 0 16 chr3 160070764 160071075 -57966083 - AluSc SINE Alu -3 306 1 286 264 0 0 chr3 160071728 160071800 -57965358 + (TG)n Simple_repeat Simple_repeat 1 72 0 1463 289 154 45 chr3 160071936 160073035 -57964123 - L2 LINE L2 0 3313 2087 273 240 83 30 chr3 160073670 160073797 -57963361 - Ricksha DNA DNA -1716 330 189 24 0 0 0 chr3 160073895 160073919 -57963239 + AT_rich Low_complexity Low_complexity 1 24 0 195 42 0 0 chr3 160073948 160073972 -57963186 + (TG)n Simple_repeat Simple_repeat 2 25 0 435 345 61 0 chr3 160074312 160074477 -57962681 - ERVL LTR ERVL -738 5026 4852 1325 348 52 21 chr3 160074582 160075300 -57961858 - ERVL LTR ERVL -1026 4738 3999 1738 190 67 15 chr3 160075317 160075659 -57961499 - MLT1A1 LTR MaLR -5 360 1 451 317 91 85 chr3 160075770 160076437 -57960721 - L2 LINE L2 -2 3311 2633 264 360 44 15 chr3 160076742 160076878 -57960280 + MIR3 SINE MIR 3 142 -66 2329 87 7 0 chr3 160076888 160077188 -57959970 + AluSg1 SINE Alu 1 302 -7 219 211 0 0 chr3 160077188 160077226 -57959932 + polypurine Low_complexity Low_complexity 3 40 0 1192 70 18 0 chr3 160077226 160077397 -57959761 + (GAAA)n Simple_repeat Simple_repeat 2 175 0 22 0 0 0 chr3 160077666 160077688 -57959470 + AT_rich Low_complexity Low_complexity 1 22 0 1560 149 6 84 chr3 160078714 160079035 -57958123 + AluJo SINE Alu 1 296 -16 240 86 0 0 chr3 160079408 160079443 -57957715 + (CA)n Simple_repeat Simple_repeat 2 36 0 433 327 39 0 chr3 160082230 160082383 -57954775 + MIR SINE MIR 96 254 -8 26 0 0 0 chr3 160083003 160083029 -57954129 + AT_rich Low_complexity Low_complexity 1 26 0 3342 237 43 8 chr3 160083755 160084964 -57952194 - L1MB7 LINE L1 -9 6175 4931 8817 176 50 107 chr3 160085201 160085608 -57951550 + Tigger5 DNA MER2_type 35 464 -1859 1173 92 0 0 chr3 160085608 160085760 -57951398 - AluSc SINE Alu -17 292 141 8817 176 50 107 chr3 160085760 160085903 -57951255 + Tigger5 DNA MER2_type 464 614 -1709 2270 124 60 14 chr3 160085903 160086250 -57950908 + THE1B LTR MaLR 2 364 0 8817 176 50 107 chr3 160086250 160087974 -57949184 + Tigger5 DNA MER2_type 614 2323 0 970 256 82 51 chr3 160087974 160088269 -57948889 + L1ME2 LINE L1 5797 6106 -60 1765 145 53 7 chr3 160088269 160088552 -57948606 + AluSx SINE Alu 1 296 -16 970 256 82 51 chr3 160088552 160088611 -57948547 + L1ME2 LINE L1 6106 6162 -4 1394 205 123 55 chr3 160088645 160089099 -57948059 - MLT1D LTR MaLR 0 505 21 403 264 82 0 chr3 160089940 160090050 -57947108 - MER5B DNA MER1_type -59 119 1 2059 95 0 27 chr3 160090427 160090722 -57946436 - AluSc SINE Alu 0 309 23 641 208 121 100 chr3 160090851 160091226 -57945932 + MER41B LTR ERV1 126 367 -111 446 243 56 21 chr3 160091282 160091426 -57945732 + MER66A LTR ERV1 285 433 -45 1085 99 43 0 chr3 160293013 160293174 -57743984 + L1MA5 LINE L1 6131 6298 -2 289 331 63 24 chr3 160293323 160293450 -57743708 + L1ME LINE L1 328 459 -5937 290 319 53 53 chr3 160294170 160294625 -57742533 + L1ME LINE L1 786 1240 -5169 416 330 40 27 chr3 160295034 160295258 -57741900 - L1MEc LINE L1 -6125 271 45 667 314 11 0 chr3 160295341 160295529 -57741629 + MIR SINE MIR 12 201 -61 4162 212 48 19 chr3 160295535 160296414 -57740744 + L1MA5A LINE L1 785 1688 -5878 3003 218 7 67 chr3 160296417 160297299 -57739859 + L1MA5A LINE L1 3493 4341 -3224 329 264 31 16 chr3 160299488 160299617 -57737541 + GA-rich Low_complexity Low_complexity 4 134 0 1113 218 113 0 chr3 160299773 160300108 -57737050 + L1MA5A LINE L1 4304 4676 -2889 509 175 0 19 chr3 160300101 160300204 -57736954 + L1MA5A LINE L1 4928 5028 -2537 * 1366 145 29 4 chr3 160300211 160300453 -57736705 - L1MA5A LINE L1 -5 6292 6045 5298 164 52 9 chr3 160300464 160302126 -57735032 + L1MA5A LINE L1 5977 7713 -3 863 242 81 33 chr3 160302620 160302979 -57734179 - L1MEc LINE L1 -4135 2261 1886 808 261 0 0 chr3 160303007 160303183 -57733975 + L1PA16 LINE L1 5942 6117 -49 1699 202 83 45 chr3 160303235 160303317 -57733841 + L1ME2 LINE L1 5630 5707 -457 1810 171 125 16 chr3 160303317 160303702 -57733456 - MSTA LTR MaLR 0 428 2 8078 154 11 71 chr3 160303703 160304068 -57733090 - MSTA-int LTR MaLR 0 1580 1195 2063 124 0 7 chr3 160304068 160304358 -57732800 - AluSx SINE Alu -24 288 1 8078 154 11 71 chr3 160304358 160305671 -57731487 - MSTA-int LTR MaLR -385 1195 3 1886 168 119 16 chr3 160305673 160306061 -57731097 - MSTA LTR MaLR 0 428 1 1699 202 83 45 chr3 160306061 160306479 -57730679 + L1ME2 LINE L1 5707 6154 -10 1878 139 11 0 chr3 160306664 160306938 -57730220 + AluSc SINE Alu 16 292 -17 200 303 106 30 chr3 160307086 160307116 -57730042 + MIR SINE MIR 57 83 -179 1714 256 87 24 chr3 160307116 160307701 -57729457 + MLT1E3 LTR MaLR 3 624 0 200 303 106 30 chr3 160307701 160307802 -57729356 + MIR SINE MIR 83 198 -64 235 336 0 19 chr3 160307811 160307915 -57729243 + MIR SINE MIR 135 236 -26 6179 28 0 1 chr3 160308333 160309061 -57728097 + L1PA2 LINE L1 5428 6154 -1 2079 181 70 113 chr3 160309083 160309367 -57727791 + MER69 DNA AcHobo 1451 1746 -780 564 96 53 0 chr3 160309367 160309461 -57727697 + L1MA9 LINE L1 6212 6310 -2 2079 181 70 113 chr3 160309461 160310087 -57727071 + MER69 DNA AcHobo 1746 2322 -204 451 386 105 45 chr3 160311210 160312821 -57724337 + L2 LINE L2 1559 3272 0 22 0 0 0 chr3 160313371 160313393 -57723765 + AT_rich Low_complexity Low_complexity 1 22 0 309 26 0 0 chr3 160314730 160314768 -57722390 + (TG)n Simple_repeat Simple_repeat 1 38 0 333 93 0 0 chr3 160314769 160314823 -57722335 + (GA)n Simple_repeat Simple_repeat 2 55 0 5335 93 24 20 chr3 160315297 160315831 -57721327 + L1PA12 LINE L1 5363 5903 -265 2070 76 6 64 chr3 160315831 160316159 -57720999 + AluY SINE Alu 3 311 0 5335 93 24 20 chr3 160316159 160316427 -57720731 + L1PA12 LINE L1 5903 6168 0 268 222 18 99 chr3 160316518 160316689 -57720469 + L1ME4a LINE L1 5935 6091 -30 1362 219 55 5 chr3 160316724 160317126 -57720032 + L1M4 LINE L1 2841 3262 -2884 479 233 17 9 chr3 160317143 160317259 -57719899 - FRAM SINE Alu -6 170 54 216 0 0 0 chr3 160317412 160317436 -57719722 + (A)n Simple_repeat Simple_repeat 1 24 0 17795 182 124 20 chr3 160317773 160320340 -57716818 + L1M1 LINE L1 17 2318 -5247 182 36 0 36 chr3 160320340 160320368 -57716790 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 17795 182 124 20 chr3 160320368 160322783 -57714375 + L1M1 LINE L1 2318 5596 -1969 388 313 88 18 chr3 160323064 160323348 -57713810 - L1MC4a LINE L1 -1880 5928 5625 1853 130 168 11 chr3 160323427 160323797 -57713361 + MSTA LTR MaLR 1 428 0 280 329 146 18 chr3 160324538 160324818 -57712340 - L2 LINE L2 -2027 1287 972 1473 136 0 0 chr3 160324939 160325153 -57712005 + AluSq SINE Alu 1 214 -99 467 113 10 72 chr3 160325195 160325292 -57711866 + L1PB2 LINE L1 6057 6147 -4 5107 73 9 3 chr3 160326088 160326776 -57710382 + L1PA7 LINE L1 5463 6154 0 1793 265 43 15 chr3 160326889 160327489 -57709669 - L1ME1 LINE L1 -59 6107 5491 25 65 0 0 chr3 160327556 160327602 -57709556 + AT_rich Low_complexity Low_complexity 1 46 0 2112 87 3 27 chr3 160327657 160327955 -57709203 - AluSg SINE Alu -19 291 1 26 30 0 0 chr3 160327955 160327988 -57709170 + AT_rich Low_complexity Low_complexity 1 33 0 22 80 0 0 chr3 160328422 160328472 -57708686 + AT_rich Low_complexity Low_complexity 1 50 0 1695 238 77 10 chr3 160328807 160329489 -57707669 + L1 LINE L1 1577 2324 -4713 885 211 33 14 chr3 160329488 160329701 -57707457 + L1 LINE L1 2645 2861 -4246 * 509 146 0 31 chr3 160329698 160329794 -57707364 + L1 LINE L1 5145 5237 -1869 * 921 246 42 53 chr3 160329797 160329906 -57707252 + AluJo SINE Alu 1 110 -202 261 0 0 0 chr3 160329906 160329935 -57707223 + (CA)n Simple_repeat Simple_repeat 2 30 0 921 246 42 53 chr3 160329935 160330110 -57707048 + AluJo SINE Alu 110 282 -30 198 103 0 0 chr3 160330110 160330139 -57707019 + (TC)n Simple_repeat Simple_repeat 2 30 0 2164 226 42 11 chr3 160330147 160330714 -57706444 + L1 LINE L1 5227 5811 -1295 695 149 0 0 chr3 160330725 160330832 -57706326 + U6 snRNA snRNA 1 107 0 8881 250 33 17 chr3 160330839 160334188 -57702970 + L1PA12 LINE L1 2386 5807 -1777 1525 103 5 5 chr3 160334190 160334404 -57702754 + THE1-int LTR MaLR 741 954 -626 943 272 28 3 chr3 160334459 160334746 -57702412 - L1MC4 LINE L1 -972 7070 6777 832 170 64 6 chr3 160334749 160334920 -57702238 + L1MB2 LINE L1 5961 6141 -30 728 296 111 6 chr3 160335008 160335359 -57701799 - L1MC4 LINE L1 -1255 6787 6400 181 234 75 101 chr3 160336540 160336728 -57700430 + L2 LINE L2 2325 2507 -807 310 387 66 25 chr3 160337642 160337916 -57699242 + L1ME LINE L1 5525 5809 -361 1828 172 60 34 chr3 160338176 160338716 -57698442 - MLT2A2 LTR ERVL 0 554 1 21 0 0 0 chr3 160339112 160339133 -57698025 + AT_rich Low_complexity Low_complexity 1 21 0 514 341 80 4 chr3 160339413 160339639 -57697519 + MIR SINE MIR 20 262 0 380 319 94 72 chr3 160339647 160340318 -57696840 + L2 LINE L2 1630 2315 -999 193 315 22 43 chr3 160341738 160341830 -57695328 - L3 LINE CR1 -1063 514 425 * 200 297 95 54 chr3 160341773 160341921 -57695237 + MER5A DNA MER1_type 36 189 0 8556 173 33 11 chr3 160342234 160344401 -57692757 + L1MCa LINE L1 18 2320 -4106 1342 201 22 11 chr3 160344402 160344670 -57692488 + AluJb SINE Alu 15 285 -27 297 0 0 0 chr3 160344670 160344703 -57692455 + (CA)n Simple_repeat Simple_repeat 2 34 0 5741 234 23 22 chr3 160344705 160346246 -57690912 + L1MCa LINE L1 2323 3866 -2560 1315 160 137 4 chr3 160346246 160346502 -57690656 + AluSx SINE Alu 1 290 -12 5741 234 23 22 chr3 160346502 160346887 -57690271 + L1MCa LINE L1 3866 4249 -2177 31 26 0 0 chr3 160346891 160346929 -57690229 + AT_rich Low_complexity Low_complexity 1 38 0 5102 131 10 6 chr3 160347681 160348550 -57688608 + L1PA16 LINE L1 5254 6161 -5 228 293 0 0 chr3 160348553 160348611 -57688547 + MARNA DNA Mariner 168 225 -361 22 35 0 0 chr3 160348830 160348859 -57688299 + AT_rich Low_complexity Low_complexity 1 29 0 1021 163 18 0 chr3 160349229 160349395 -57687763 + AluJb SINE Alu 134 302 -10 524 221 41 12 chr3 160349673 160349845 -57687313 - LTR37B LTR ERV1 -62 406 230 607 292 7 0 chr3 160349919 160350073 -57687085 - MER5B DNA MER1_type -23 155 1 414 295 161 0 chr3 160350134 160350283 -57686875 + MER5A DNA MER1_type 9 181 -8 341 244 13 0 chr3 160350283 160350361 -57686797 - LTR37B LTR ERV1 -384 84 6 359 308 7 63 chr3 160351196 160351339 -57685819 - L2 LINE L2 0 3272 3138 21 36 0 0 chr3 160351366 160351394 -57685764 + AT_rich Low_complexity Low_complexity 1 28 0 1006 158 8 77 chr3 160351830 160352064 -57685094 - MER20 DNA MER1_type -1 218 1 2201 77 17 20 chr3 160352813 160353113 -57684045 + AluY SINE Alu 1 299 -12 1368 243 126 25 chr3 160353235 160353799 -57683359 + L1ME2 LINE L1 5542 6162 -2 952 303 230 6 chr3 160353900 160354366 -57682792 + L2 LINE L2 2067 2636 -678 1050 148 87 25 chr3 160354366 160354719 -57682439 - MSTA LTR MaLR 0 426 18 975 285 53 16 chr3 160354728 160355182 -57681976 + L2 LINE L2 2631 3097 -216 3165 72 28 7 chr3 160356625 160357017 -57680141 + MLT2A1 LTR ERVL 1 404 -40 313 57 19 19 chr3 160357017 160357070 -57680088 + (TA)n Simple_repeat Simple_repeat 2 54 0 3165 72 28 7 chr3 160357070 160357105 -57680053 + MLT2A1 LTR ERVL 404 437 -7 302 342 83 60 chr3 160357169 160357470 -57679688 + L2 LINE L2 2581 2888 -426 850 311 48 22 chr3 160357935 160358332 -57678826 + L2 LINE L2 2633 3036 -236 442 301 0 71 chr3 160358319 160358502 -57678656 + L2 LINE L2 3143 3312 -1 * 208 175 25 0 chr3 160358569 160358609 -57678549 + (TATATG)n Simple_repeat Simple_repeat 4 44 0 246 95 0 0 chr3 160358669 160358711 -57678447 + (TTAA)n Simple_repeat Simple_repeat 3 44 0 26 107 0 0 chr3 160359717 160359820 -57677338 + AT_rich Low_complexity Low_complexity 1 103 0 209 287 11 11 chr3 160359967 160360061 -57677097 + (TA)n Simple_repeat Simple_repeat 1 94 0 252 230 212 0 chr3 160360695 160360808 -57676350 - MIR SINE MIR -6 256 120 327 261 72 59 chr3 160361015 160361168 -57675990 - L1ME4a LINE L1 -3 6118 5964 267 234 36 45 chr3 160361381 160361492 -57675666 + L1M4 LINE L1 14 123 -6419 1165 262 46 10 chr3 160361707 160362009 -57675149 + LTR53 LTR ERVL 195 507 -12 240 224 41 51 chr3 160362038 160362136 -57675022 + L1M4 LINE L1 146 242 -6300 1482 185 26 100 chr3 160362466 160362887 -57674271 + MLT1B LTR MaLR 1 390 0 2590 278 62 32 chr3 160362890 160364760 -57672398 + L1M4 LINE L1 1031 3073 -3571 353 363 86 26 chr3 160364860 160365312 -57671846 + L2 LINE L2 2478 2956 -358 268 325 16 32 chr3 160367852 160367978 -57669180 + L1PBb LINE L1 768 891 -5959 2256 94 105 3 chr3 160368022 160368364 -57668794 + MER51B LTR ERV1 1 377 0 8947 135 31 11 chr3 160368364 160368963 -57668195 + MER51B-int LTR ERV1 1 587 -7229 6231 56 1 4 chr3 160368963 160369745 -57667413 + LTR17 LTR ERV1 1 780 0 8947 135 31 11 chr3 160369745 160370616 -57666542 + MER51B-int LTR ERV1 587 1500 -6316 273 188 0 0 chr3 160370627 160370675 -57666483 + MER4A LTR ERV1 51 98 -566 744 152 26 66 chr3 160370680 160370872 -57666286 + MER4A LTR ERV1 276 518 -146 8524 101 50 6 chr3 160370873 160372285 -57664873 + MER51B-int LTR ERV1 1791 3265 -4551 1843 161 163 35 chr3 160372295 160372689 -57664469 + MER61-int LTR ERV1 1902 2244 -3702 20222 63 5 1 chr3 160372689 160376168 -57660990 + L1PA6 LINE L1 2697 6152 -2 1843 161 163 35 chr3 160376168 160376218 -57660940 + MER61-int LTR ERV1 2244 3172 -2774 1663 128 5 4 chr3 160376233 160376602 -57660556 + MER61-int LTR ERV1 2217 2643 -2574 * 10964 124 49 9 chr3 160376583 160378271 -57658887 + MER61-int LTR ERV1 5392 7146 -391 568 225 29 7 chr3 160378277 160378415 -57658743 + LTR54B LTR ERV1 1 141 -357 954 97 0 0 chr3 160378415 160378549 -57658609 + MER51-int LTR ERV1 7470 7603 -213 10484 229 39 17 chr3 160378549 160378896 -57658262 + L1PBb LINE L1 1796 2134 -4715 7014 58 16 0 chr3 160378896 160380135 -57657023 - L1PA6 LINE L1 0 6154 4909 10484 229 39 17 chr3 160380135 160380954 -57656204 + L1PBb LINE L1 2134 2934 -3915 1450 179 90 4 chr3 160380954 160381233 -57655925 + AluJb SINE Alu 1 303 -9 10484 229 39 17 chr3 160381233 160381245 -57655913 + L1PBb LINE L1 2934 2944 -3905 180 0 0 0 chr3 160381245 160381265 -57655893 + (CA)n Simple_repeat Simple_repeat 2 21 0 10484 229 39 17 chr3 160381265 160383925 -57653233 + L1PBb LINE L1 2944 5892 -957 322 261 0 0 chr3 160383930 160383995 -57653163 + AluJ/FLAM SINE Alu 3 67 -235 24 0 0 0 chr3 160384160 160384184 -57652974 + AT_rich Low_complexity Low_complexity 1 24 0 9060 96 11 1 chr3 160384184 160386279 -57650879 - L1PA8 LINE L1 -3 6169 4058 1282 153 0 0 chr3 160386485 160386700 -57650458 + L1PA16 LINE L1 5950 6164 -2 1874 254 37 13 chr3 160387365 160387825 -57649333 + MLT1A2-int LTR MaLR 1252 1722 -13 1279 227 92 12 chr3 160387848 160388174 -57648984 + MLT1A2 LTR MaLR 12 363 -11 27 0 0 0 chr3 160388404 160388431 -57648727 + AT_rich Low_complexity Low_complexity 1 27 0 487 252 178 0 chr3 160388517 160388652 -57648506 + MER5A DNA MER1_type 31 189 0 2796 6 0 3 chr3 160390245 160390556 -57646602 - AluYb8 SINE Alu -8 310 1 301 233 97 51 chr3 160391177 160391353 -57645805 - L1ME4a LINE L1 -176 5945 5762 21 71 0 0 chr3 160391555 160391597 -57645561 + AT_rich Low_complexity Low_complexity 1 42 0 328 333 33 24 chr3 160392708 160392846 -57644312 + MIR3 SINE MIR 46 185 -23 1512 203 42 126 chr3 160393089 160393635 -57643523 + MER70B LTR ERVL 4 503 -75 376 333 101 38 chr3 160393605 160393950 -57643208 + MLT1J LTR MaLR 53 419 -92 * 23 54 0 0 chr3 160394730 160394767 -57642391 + AT_rich Low_complexity Low_complexity 1 37 0 341 293 104 28 chr3 160395034 160395427 -57641731 + L1ME4a LINE L1 5530 5952 -169 183 80 0 0 chr3 160395680 160395705 -57641453 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 1093 193 10 0 chr3 160396175 160396377 -57640781 + MER3 DNA MER1_type 1 204 -5 29 47 0 0 chr3 160396825 160396868 -57640290 + AT_rich Low_complexity Low_complexity 1 43 0 339 231 30 71 chr3 160397008 160397177 -57639981 - L1ME4a LINE L1 -265 5856 5695 1170 164 41 5 chr3 160397499 160397719 -57639439 - L1PA15 LINE L1 0 6165 5938 417 283 73 39 chr3 160400880 160401085 -57636073 - MIR SINE MIR -21 241 30 209 139 23 0 chr3 160401778 160401821 -57635337 + (TG)n Simple_repeat Simple_repeat 2 45 0 * 317 72 84 0 chr3 160401820 160401903 -57635255 + (TA)n Simple_repeat Simple_repeat 1 90 0 209 179 0 0 chr3 160401903 160401942 -57635216 + (CA)n Simple_repeat Simple_repeat 2 40 0 1254 198 45 49 chr3 160401990 160402278 -57634880 + AluJo SINE Alu 1 287 -25 275 87 58 0 chr3 160402429 160402498 -57634660 + (TA)n Simple_repeat Simple_repeat 1 73 0 263 150 33 0 chr3 160402532 160402592 -57634566 + (TA)n Simple_repeat Simple_repeat 2 63 0 557 63 57 57 chr3 160402592 160402767 -57634391 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 238 130 22 0 chr3 160402770 160402816 -57634342 + (TA)n Simple_repeat Simple_repeat 1 47 0 317 271 148 49 chr3 160402989 160403111 -57634047 - L2 LINE L2 -1 3312 3179 1163 163 66 0 chr3 160403175 160403433 -57633725 + L1MA7 LINE L1 6017 6291 0 286 298 39 61 chr3 160403729 160403910 -57633248 - L2 LINE L2 -316 2997 2821 5045 29 0 0 chr3 160404160 160404757 -57632401 - L1PA3 LINE L1 -1766 4380 3784 * 8349 23 9 5 chr3 160404755 160406465 -57630693 + L1PA3 LINE L1 4366 6084 -71 1836 240 20 23 chr3 160408370 160408932 -57628226 - L1M4 LINE L1 -2171 4473 3914 928 287 31 6 chr3 160408949 160409308 -57627850 - L1M4 LINE L1 -2932 3712 3345 * 1296 251 54 0 chr3 160409290 160409605 -57627553 + L1M4 LINE L1 573 904 -5638 6338 163 147 35 chr3 160409605 160411130 -57626028 + pTR5 LTR ERV1 743 2438 0 1704 193 78 13 chr3 160411169 160411631 -57625527 + L1M4 LINE L1 937 1428 -5114 1123 200 55 123 chr3 160411720 160412160 -57624998 - L1M4 LINE L1 -6117 425 16 507 252 43 52 chr3 160412282 160412492 -57624666 + MLT1K LTR MaLR 365 572 -16 192 326 192 12 chr3 160412616 160412944 -57624214 - L2 LINE L2 -1059 2255 1869 421 184 29 0 chr3 160414185 160414288 -57622870 + GA-rich Low_complexity Low_complexity 2 107 0 2285 171 26 23 chr3 160414827 160415255 -57621903 - MSTB1 LTR MaLR -3 429 1 462 33 0 0 chr3 160415440 160415501 -57621657 + AluY SINE Alu 1 61 -249 1911 172 0 34 chr3 160416154 160416503 -57620655 - MER1B DNA MER1_type 0 337 1 300 293 24 85 chr3 160417376 160417540 -57619618 + MLT1L LTR MaLR 1 154 -461 674 159 16 192 chr3 160417543 160417788 -57619370 - MER20 DNA MER1_type -2 217 16 365 327 153 14 chr3 160417882 160418105 -57619053 + MLT1L LTR MaLR 340 593 -22 9181 174 51 23 chr3 160419042 160420627 -57616531 - L1MA8 LINE L1 -7 6284 4745 180 0 0 0 chr3 160420627 160420647 -57616511 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 9181 174 51 23 chr3 160420647 160420675 -57616483 - L1MA8 LINE L1 -1546 4745 4719 2049 111 81 23 chr3 160420675 160421019 -57616139 + THE1B LTR MaLR 1 364 0 9181 174 51 23 chr3 160421019 160421272 -57615886 - L1MA8 LINE L1 -1572 4719 4475 1938 169 19 8 chr3 160421272 160421634 -57615524 - MER47A DNA MER2_type 0 366 1 9181 174 51 23 chr3 160421634 160422896 -57614262 - L1MA8 LINE L1 -1816 4475 3089 23 33 0 0 chr3 160422976 160423006 -57614152 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr3 160424020 160424045 -57613113 + AT_rich Low_complexity Low_complexity 1 25 0 344 224 204 0 chr3 160424232 160424379 -57612779 + L1ME LINE L1 5602 5778 -343 264 286 167 0 chr3 160424404 160424488 -57612670 + L2 LINE L2 3216 3313 0 21 36 0 0 chr3 160424844 160424872 -57612286 + AT_rich Low_complexity Low_complexity 1 28 0 7538 19 2 6 chr3 160424872 160425761 -57611397 - L1PA3 LINE L1 -1 6154 5269 5107 30 0 6 chr3 160425759 160426390 -57610768 + L1PA3 LINE L1 4674 5300 -846 * 837 181 6 6 chr3 160426810 160426970 -57610188 - MER6A DNA MER2_type 0 605 446 5506 134 0 0 chr3 160427051 160428328 -57608830 - L1PA14 LINE L1 -3 6158 4880 2406 171 20 20 chr3 160428329 160428769 -57608389 - MER6A DNA MER2_type -161 444 5 322 274 64 32 chr3 160428854 160429011 -57608147 - MER104 DNA Tc2 -4 176 15 278 358 9 0 chr3 160429172 160429281 -57607877 - MIR3 SINE MIR -9 199 90 1007 65 7 14 chr3 160429320 160429459 -57607699 + L1MA1 LINE L1 6165 6302 0 434 310 149 27 chr3 160430678 160431046 -57606112 - L1M4 LINE L1 -1169 4977 4565 244 354 10 10 chr3 160431581 160431677 -57605481 - L2 LINE L2 -21 3292 3197 414 39 0 0 chr3 160431753 160431805 -57605353 + (CA)n Simple_repeat Simple_repeat 2 53 0 1626 200 69 77 chr3 160431891 160432396 -57604762 + MLT1D LTR MaLR 5 505 0 182 320 0 0 chr3 160432767 160432817 -57604341 + L2 LINE L2 3183 3232 -81 330 316 71 60 chr3 160433179 160433347 -57603811 - MIR SINE MIR -59 203 34 424 279 23 52 chr3 160434398 160434570 -57602588 + MIR SINE MIR 63 229 -33 369 0 0 0 chr3 160434747 160434788 -57602370 + (TG)n Simple_repeat Simple_repeat 1 41 0 397 319 114 0 chr3 160435151 160435317 -57601841 - MIR SINE MIR -67 195 11 287 350 42 21 chr3 160435462 160435605 -57601553 + MIR SINE MIR 49 194 -68 184 229 0 0 chr3 160435607 160435642 -57601516 + L2 LINE L2 3261 3295 -18 28 0 0 0 chr3 160437203 160437231 -57599927 + AT_rich Low_complexity Low_complexity 1 28 0 403 258 74 78 chr3 160438690 160438907 -57598251 - L2 LINE L2 -8 3305 3090 2266 198 37 29 chr3 160439005 160439520 -57597638 + LTR53 LTR ERVL 1 519 0 464 195 0 87 chr3 160440310 160440459 -57596699 - L1MA4 LINE L1 -5 6295 6160 30769 69 10 3 chr3 160440750 160446825 -57590333 - L1PA5 LINE L1 -8 6146 11 22 0 0 0 chr3 160447534 160447556 -57589602 + AT_rich Low_complexity Low_complexity 1 22 0 1003 161 36 5 chr3 160447706 160447898 -57589260 - L1PA16 LINE L1 -9 6157 5960 281 219 134 12 chr3 160448144 160448226 -57588932 + MIR SINE MIR 16 107 -101 274 86 0 0 chr3 160448285 160448320 -57588838 + MADE1 DNA Mariner 1 35 -45 24 0 0 0 chr3 160448361 160448385 -57588773 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr3 160449093 160449129 -57588029 + AT_rich Low_complexity Low_complexity 1 36 0 1568 169 34 41 chr3 160449289 160449584 -57587574 - AluJo SINE Alu -18 294 2 2127 57 8 15 chr3 160449625 160449888 -57587270 + AluY SINE Alu 36 296 -15 2525 132 3 0 chr3 160450785 160451148 -57586010 - THE1B LTR MaLR 0 364 1 8698 106 49 101 chr3 160451148 160452815 -57584343 - THE1B-int LTR MaLR 0 1580 1 2428 114 34 0 chr3 160452815 160453166 -57583992 - THE1B LTR MaLR -1 363 1 1700 255 64 52 chr3 160453254 160453633 -57583525 + L1MC5 LINE L1 6626 6999 -962 2301 69 7 14 chr3 160453633 160453943 -57583215 - AluY SINE Alu 0 308 1 1700 255 64 52 chr3 160453943 160454382 -57582776 + L1MC5 LINE L1 6999 7390 -571 265 154 13 51 chr3 160454399 160454477 -57582681 + L1MC5 LINE L1 7453 7527 -434 390 265 61 31 chr3 160454551 160454747 -57582411 + L1ME3A LINE L1 5962 6163 -7 27 0 0 0 chr3 160454815 160454842 -57582316 + AT_rich Low_complexity Low_complexity 1 27 0 1638 137 132 41 chr3 160454891 160455233 -57581925 + THE1C LTR MaLR 3 375 0 198 0 0 0 chr3 160456213 160456235 -57580923 + (TG)n Simple_repeat Simple_repeat 2 23 0 1444 154 55 37 chr3 160456568 160456840 -57580318 - AluSq SINE Alu -7 306 30 557 346 106 18 chr3 160457153 160457595 -57579563 - L2 LINE L2 -540 2774 2294 459 100 0 0 chr3 160457642 160457712 -57579446 + (TA)n Simple_repeat Simple_repeat 2 71 0 221 342 125 56 chr3 160457798 160458277 -57578881 - L2 LINE L2 -1241 2073 1562 2250 103 3 0 chr3 160459286 160459586 -57577572 + AluSg SINE Alu 5 305 -5 2892 146 24 5 chr3 160459587 160459686 -57577472 + L1MA5 LINE L1 5605 5701 -599 237 65 0 0 chr3 160459686 160459717 -57577441 + (CA)n Simple_repeat Simple_repeat 2 32 0 2892 146 24 5 chr3 160459717 160460212 -57576946 + L1MA5 LINE L1 5701 6298 -2 279 331 63 24 chr3 160460361 160460488 -57576670 + L1ME LINE L1 328 459 -5937 2217 254 82 49 chr3 160461208 160462672 -57574486 + L1ME LINE L1 786 2312 -4094 219 69 0 0 chr3 160462672 160462701 -57574457 + (TAGA)n Simple_repeat Simple_repeat 3 31 0 2217 254 82 49 chr3 160462701 160463511 -57573647 + L1ME LINE L1 2312 3093 -3313 608 364 53 40 chr3 160463516 160464124 -57573034 + L1PA16 LINE L1 789 1404 -6170 294 275 44 0 chr3 160464223 160464314 -57572844 + L1PA16 LINE L1 2086 2180 -5401 5287 191 49 3 chr3 160464389 160466225 -57570933 + L1PA16 LINE L1 5675 7604 0 346 209 108 16 chr3 160466231 160466360 -57570798 + L1ME3A LINE L1 5747 5887 -283 598 231 4 136 chr3 160467265 160467508 -57569650 - MIR SINE MIR -40 222 12 2165 77 3 73 chr3 160468061 160468194 -57568964 + AluSc SINE Alu 1 142 -167 1979 120 7 0 chr3 160468194 160468478 -57568680 + AluSx SINE Alu 1 286 -26 2165 77 3 73 chr3 160468478 160468657 -57568501 + AluSc SINE Alu 142 291 -18 1445 125 43 0 chr3 160468817 160469025 -57568133 + AluSx SINE Alu 44 260 -52 214 244 0 0 chr3 160469714 160469755 -57567403 + polypurine Low_complexity Low_complexity 4 44 0 1062 115 25 0 chr3 160469860 160470105 -57567053 + (TAGA)n Simple_repeat Simple_repeat 1 251 0 234 340 100 20 chr3 160470133 160470283 -57566875 - MER5B DNA MER1_type -8 170 9 444 303 29 63 chr3 160470921 160471159 -57565999 + L1MEd LINE L1 130 359 -5760 822 207 96 29 chr3 160471409 160471617 -57565541 + MER58 DNA MER1_type 34 255 -86 3529 151 23 3 chr3 160471617 160472181 -57564977 - LTR26 LTR ERV1 0 603 29 308 149 15 60 chr3 160472484 160472551 -57564607 + L2 LINE L2 3209 3272 0 190 257 50 79 chr3 160473216 160473356 -57563802 + L2 LINE L2 2180 2315 -999 222 338 68 14 chr3 160473377 160473451 -57563707 + MIR SINE MIR 2 79 -183 1769 113 0 4 chr3 160473552 160473799 -57563359 + AluSq SINE Alu 63 308 -5 508 117 0 0 chr3 160474105 160474182 -57562976 - AluS SINE Alu -235 77 1 2237 88 10 10 chr3 160475174 160475482 -57561676 - AluY SINE Alu -3 308 1 2006 110 3 52 chr3 160475580 160475890 -57561268 - AluSq SINE Alu -18 295 1 2755 216 38 48 chr3 160478441 160479173 -57557985 - MER50 LTR ERV1 0 734 10 2977 98 2 16 chr3 160479777 160480216 -57556942 + L1PA11 LINE L1 5742 6174 0 1708 243 40 9 chr3 160480460 160480908 -57556250 - MLT1C LTR MaLR 0 467 6 560 349 105 31 chr3 160480911 160481547 -57555611 + L2 LINE L2 1952 2634 -680 4892 149 103 7 chr3 160481898 160482793 -57554365 - Tigger1 DNA MER2_type -1436 982 2 27 49 0 0 chr3 160482808 160482849 -57554309 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chr3 160483094 160483126 -57554032 + AT_rich Low_complexity Low_complexity 1 32 0 455 101 20 30 chr3 160483345 160483444 -57553714 + (GAA)n Simple_repeat Simple_repeat 3 100 0 1803 178 23 0 chr3 160484531 160484834 -57552324 + AluJo SINE Alu 1 310 -2 387 0 0 0 chr3 160485008 160485051 -57552107 + (CA)n Simple_repeat Simple_repeat 2 44 0 512 135 0 0 chr3 160485079 160485153 -57552005 - THE1-int LTR MaLR -922 658 585 684 158 0 26 chr3 160485153 160485267 -57551891 - FLAM_C SINE Alu -19 124 14 25 102 0 0 chr3 160485621 160485709 -57551449 + AT_rich Low_complexity Low_complexity 1 88 0 27 0 0 0 chr3 160487653 160487680 -57549478 + AT_rich Low_complexity Low_complexity 1 27 0 273 29 0 0 chr3 160489684 160489718 -57547440 + (CA)n Simple_repeat Simple_repeat 1 34 0 242 296 11 45 chr3 160490096 160490184 -57546974 - MIR3 SINE MIR -9 199 115 2466 108 0 6 chr3 160490255 160490616 -57546542 - L1PB1 LINE L1 -1 6150 5792 521 194 0 0 chr3 160490757 160490860 -57546298 + L1PBa LINE L1 95 197 -6666 * 2193 142 0 14 chr3 160490857 160491210 -57545948 + L1PBa LINE L1 1392 1739 -5124 2315 88 3 0 chr3 160491210 160491505 -57545653 + AluY SINE Alu 1 296 -15 4201 66 28 0 chr3 160491505 160492078 -57545080 + L1PBa LINE L1 2098 2686 -4177 400 328 81 0 chr3 160492603 160492777 -57544381 + MIR SINE MIR 48 235 -27 287 298 21 11 chr3 160493547 160493641 -57543517 - MLT1I LTR MaLR -157 252 158 30 59 0 0 chr3 160493833 160493884 -57543274 + AT_rich Low_complexity Low_complexity 1 51 0 503 259 0 0 chr3 160498668 160498776 -57538382 - MARNA DNA Mariner -342 244 137 456 313 60 0 chr3 160499659 160499793 -57537365 - MIR3 SINE MIR -18 190 49 265 324 14 0 chr3 160500026 160500100 -57537058 + MER91A DNA MER1_type 17 91 -105 1227 233 29 88 chr3 160500102 160500522 -57536636 + MLT2D LTR ERVL 1 395 -19 220 303 15 30 chr3 160500594 160500660 -57536498 + MER91A DNA MER1_type 126 190 0 2387 94 0 0 chr3 160501331 160501639 -57535519 - AluSx SINE Alu -4 308 1 1208 61 0 18 chr3 160501643 160501807 -57535351 - L1PA8 LINE L1 -7 6165 6005 455 53 0 0 chr3 160501867 160501924 -57535234 - L1PA8 LINE L1 -111 6061 6005 293 330 37 0 chr3 160503352 160503461 -57533697 - L2 LINE L2 0 3313 3201 4647 211 30 18 chr3 160504631 160506506 -57530652 - L1MB2 LINE L1 0 6235 4268 1037 279 24 11 chr3 160506509 160506878 -57530280 - L1MB2 LINE L1 -4853 1288 915 509 331 36 62 chr3 160507355 160507711 -57529447 - L1MB2 LINE L1 -5543 588 242 30 0 0 0 chr3 160507901 160507931 -57529227 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr3 160508264 160508300 -57528858 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 160509151 160509172 -57527986 + AT_rich Low_complexity Low_complexity 1 21 0 776 238 32 27 chr3 160511014 160511199 -57525959 - MER5A DNA MER1_type 0 189 4 22 0 0 0 chr3 160512738 160512760 -57524398 + AT_rich Low_complexity Low_complexity 1 22 0 222 383 84 0 chr3 160513936 160514043 -57523115 + L2 LINE L2 3149 3264 -8 2306 91 0 7 chr3 160515866 160516174 -57520984 - AluSx SINE Alu -6 306 1 193 269 39 0 chr3 160516392 160516444 -57520714 + L2 LINE L2 2992 3045 -227 1029 194 9 9 chr3 160516769 160516980 -57520178 - L1PA16 LINE L1 -10 6156 5946 21 36 0 0 chr3 160517557 160517585 -57519573 + AT_rich Low_complexity Low_complexity 1 28 0 372 22 0 0 chr3 160518091 160518136 -57519022 + (CA)n Simple_repeat Simple_repeat 2 46 0 3242 113 17 2 chr3 160519420 160519899 -57517259 - LTR15 LTR ERV1 -7 486 1 867 243 0 5 chr3 160519923 160520108 -57517050 + LTR41 LTR ERVL 1 184 -589 272 281 73 10 chr3 160520296 160520392 -57516766 + LTR41 LTR ERVL 492 593 -180 15041 155 13 9 chr3 160520659 160524152 -57513006 - L1PA10 LINE L1 -5 6163 2665 287 333 43 8 chr3 160524990 160525107 -57512051 + MIR SINE MIR 128 248 -14 485 324 74 56 chr3 160526291 160526615 -57510543 + MER102b DNA MER1_type 12 341 0 520 278 61 34 chr3 160527661 160527988 -57509170 + L1ME4a LINE L1 5548 5883 -238 2765 168 68 48 chr3 160528257 160528943 -57508215 + L1MA9 LINE L1 5551 6250 -62 51 31 0 0 chr3 160528972 160529037 -57508121 + AT_rich Low_complexity Low_complexity 1 65 0 4912 96 31 1 chr3 160529292 160530010 -57507148 - L1PA13 LINE L1 -2 6161 5423 428 232 42 54 chr3 160530814 160530982 -57506176 + L1MC5 LINE L1 7763 7928 -33 267 293 13 13 chr3 160531594 160531669 -57505489 - MER94 DNA DNA -15 119 45 830 175 33 16 chr3 160531815 160531998 -57505160 + MER53 DNA DNA 4 189 0 4531 232 36 106 chr3 160532618 160533426 -57503732 - L1MD2 LINE L1 -340 6019 5156 1651 151 92 0 chr3 160533426 160533583 -57503575 - AluSx SINE Alu -2 310 169 444 19 0 0 chr3 160533583 160533636 -57503522 + (TG)n Simple_repeat Simple_repeat 2 54 0 1651 151 92 0 chr3 160533636 160533762 -57503396 - AluSx SINE Alu -143 169 1 4531 232 36 106 chr3 160533762 160534244 -57502914 - L1MD2 LINE L1 -1203 5156 4642 1780 188 0 3 chr3 160534244 160534547 -57502611 + AluJb SINE Alu 1 302 -10 4531 232 36 106 chr3 160534547 160535283 -57501875 - L1MD2 LINE L1 -1717 4642 3856 2080 113 0 0 chr3 160535283 160535592 -57501566 - AluY SINE Alu 0 309 1 351 0 0 0 chr3 160535592 160535631 -57501527 + (TTA)n Simple_repeat Simple_repeat 3 41 0 6630 66 6 1 chr3 160535631 160537043 -57500115 - L1PA6 LINE L1 -18 6136 4722 2073 107 0 14 chr3 160537044 160537334 -57499824 - AluSq SINE Alu -27 286 1 4531 232 36 106 chr3 160537334 160538108 -57499050 - L1MD2 LINE L1 -2500 3859 3259 1152 240 75 45 chr3 160538092 160538533 -57498625 - L1MD2 LINE L1 -3240 2906 2453 * 5257 146 18 5 chr3 160538544 160539434 -57497724 + L1PB4 LINE L1 5254 6155 -1 522 279 46 5 chr3 160539443 160539662 -57497496 - L1MD2 LINE L1 -3673 2473 2246 329 276 10 0 chr3 160539668 160539766 -57497392 + L1MDa LINE L1 1019 1117 -5423 * 394 258 68 8 chr3 160539755 160539887 -57497271 + L1MA3 LINE L1 6166 6305 0 2185 116 3 0 chr3 160539989 160540290 -57496868 + AluSx SINE Alu 1 302 -10 208 147 0 0 chr3 160541942 160541976 -57495182 + (TA)n Simple_repeat Simple_repeat 1 34 0 371 75 19 0 chr3 160542625 160542678 -57494480 - L1PA8 LINE L1 -14 6158 6105 205 216 0 0 chr3 160542778 160542815 -57494343 + L2 LINE L2 3259 3295 -18 21 0 0 0 chr3 160543778 160543799 -57493359 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chr3 160544209 160544250 -57492908 + (TTTTA)n Simple_repeat Simple_repeat 5 45 0 33 66 0 0 chr3 160549243 160549304 -57487854 + AT_rich Low_complexity Low_complexity 1 61 0 437 326 47 47 chr3 160550724 160550960 -57486198 - MIR SINE MIR -24 238 3 1272 113 57 0 chr3 160551129 160551323 -57485835 - LTR12 LTR ERV1 -133 581 377 250 245 31 20 chr3 160551324 160551422 -57485736 - LTR30 LTR ERV1 -80 642 544 3330 145 87 59 chr3 160551422 160552340 -57484818 - pTR5 LTR ERV1 -413 2025 743 276 233 151 0 chr3 160553956 160554029 -57483129 + MER5A DNA MER1_type 28 111 -78 2765 7 0 0 chr3 160555297 160555600 -57481558 + AluYb8 SINE Alu 3 305 -13 792 259 16 75 chr3 160555805 160555931 -57481227 - MIR SINE MIR -1 261 156 2375 45 41 0 chr3 160555931 160556221 -57480937 - AluY SINE Alu -9 302 1 792 259 16 75 chr3 160556221 160556349 -57480809 - MIR SINE MIR -106 156 22 22 0 0 0 chr3 160557215 160557237 -57479921 + AT_rich Low_complexity Low_complexity 1 22 0 250 357 56 14 chr3 160557392 160557535 -57479623 - MER5A DNA MER1_type -1 188 40 * 260 371 56 14 chr3 160557417 160557560 -57479598 + MER5A DNA MER1_type 38 186 -3 2518 68 11 25 chr3 160557686 160558041 -57479117 + L1PB1 LINE L1 5801 6150 -1 40 73 0 0 chr3 160558222 160558304 -57478854 + AT_rich Low_complexity Low_complexity 1 82 0 450 94 0 0 chr3 160560116 160560180 -57476978 + (TA)n Simple_repeat Simple_repeat 2 65 0 21 0 0 0 chr3 160561503 160561524 -57475634 + AT_rich Low_complexity Low_complexity 1 21 0 219 36 0 0 chr3 160562979 160563007 -57474151 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 21 36 0 0 chr3 160565956 160565984 -57471174 + AT_rich Low_complexity Low_complexity 1 28 0 2212 90 7 3 chr3 160566194 160566493 -57470665 + AluSq SINE Alu 14 313 0 215 116 47 0 chr3 160566493 160566536 -57470622 + GA-rich Low_complexity Low_complexity 4 48 0 931 0 26 0 chr3 160567285 160567399 -57469759 + (TAGA)n Simple_repeat Simple_repeat 2 118 0 360 273 41 58 chr3 160567546 160567667 -57469491 + L2 LINE L2 3183 3301 -12 375 352 0 0 chr3 160568324 160568449 -57468709 - MIR3 SINE MIR -9 199 75 389 203 144 78 chr3 160568674 160568827 -57468331 - L1PA13 LINE L1 -10 6153 5991 24 0 0 0 chr3 160568843 160568867 -57468291 + AT_rich Low_complexity Low_complexity 1 24 0 463 342 137 25 chr3 160569911 160570414 -57466744 - L2 LINE L2 -4 3309 2741 21 0 0 0 chr3 160570811 160570832 -57466326 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr3 160571630 160571660 -57465498 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr3 160573707 160573743 -57463415 + AT_rich Low_complexity Low_complexity 1 36 0 469 204 0 39 chr3 160574157 160574260 -57462898 - 7SK RNA RNA -90 103 5 21 0 0 0 chr3 160574426 160574447 -57462711 + AT_rich Low_complexity Low_complexity 1 21 0 399 223 170 0 chr3 160575649 160575761 -57461397 + MIR SINE MIR 81 211 -51 194 273 55 0 chr3 160576036 160576091 -57461067 + MIR SINE MIR 92 149 -113 953 199 0 75 chr3 160576807 160577033 -57460125 + AluJo SINE Alu 85 293 -19 28 29 0 0 chr3 160577066 160577101 -57460057 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr3 160577787 160577818 -57459340 + AT_rich Low_complexity Low_complexity 1 31 0 254 211 0 35 chr3 160578338 160578395 -57458763 - Charlie8 DNA MER1_type -990 1427 1373 369 0 0 0 chr3 160578459 160578500 -57458658 + (TA)n Simple_repeat Simple_repeat 1 41 0 381 231 60 22 chr3 160579336 160579470 -57457688 - L1ME1 LINE L1 -18 6148 6010 23 0 0 0 chr3 160579753 160579776 -57457382 + AT_rich Low_complexity Low_complexity 1 23 0 306 219 102 39 chr3 160579781 160579909 -57457249 - L1ME4a LINE L1 -4 6117 5982 277 215 0 15 chr3 160579932 160579997 -57457161 - L1ME4a LINE L1 -93 6028 5965 22 70 0 0 chr3 160581439 160581482 -57455676 + AT_rich Low_complexity Low_complexity 1 43 0 14667 176 39 14 chr3 160581522 160585845 -57451313 + L1MA1 LINE L1 11 6253 -1312 6825 112 16 5 chr3 160585845 160586965 -57450193 + L1MA1 LINE L1 6583 7716 -5 41 36 0 0 chr3 160586968 160587023 -57450135 + AT_rich Low_complexity Low_complexity 1 55 0 725 319 81 26 chr3 160587217 160587983 -57449175 + L1ME2 LINE L1 4038 4845 -1301 8234 124 8 8 chr3 160588056 160589371 -57447787 + L1P LINE L1 1871 3185 -2961 21 0 0 0 chr3 160590009 160590030 -57447128 + AT_rich Low_complexity Low_complexity 1 21 0 388 255 47 20 chr3 160590035 160590184 -57446974 + L1ME2 LINE L1 5729 5881 -283 * 488 301 73 18 chr3 160590183 160590469 -57446689 + L1ME4a LINE L1 5521 5822 -299 2023 139 50 16 chr3 160590764 160591144 -57446014 + L1MA4A LINE L1 5910 6302 -1 23 0 0 0 chr3 160591291 160591314 -57445844 + AT_rich Low_complexity Low_complexity 1 23 0 897 258 55 56 chr3 160591663 160592135 -57445023 + MLT1C LTR MaLR 17 496 -9 301 43 0 64 chr3 160592738 160592785 -57444373 + L1PA8 LINE L1 6123 6166 -6 24 53 0 0 chr3 160592971 160593009 -57444149 + AT_rich Low_complexity Low_complexity 1 38 0 473 231 22 0 chr3 160593515 160593649 -57443509 + GA-rich Low_complexity Low_complexity 3 139 0 290 329 127 13 chr3 160593697 160593934 -57443224 + L2 LINE L2 1769 2032 -1282 316 233 128 35 chr3 160593951 160594123 -57443035 + L1ME4a LINE L1 5810 5997 -124 1151 221 41 172 chr3 160594304 160594915 -57442243 + L1ME3A LINE L1 5627 6157 -13 243 261 62 0 chr3 160595379 160595444 -57441714 + MIR SINE MIR 71 139 -69 465 226 10 49 chr3 160596326 160596428 -57440730 + L2 LINE L2 3200 3297 -16 234 0 0 0 chr3 160596431 160596457 -57440701 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 272 337 10 66 chr3 160596644 160596840 -57440318 - L3 LINE CR1 -476 1101 917 23 0 0 0 chr3 160596956 160596979 -57440179 + AT_rich Low_complexity Low_complexity 1 23 0 204 40 0 0 chr3 160597601 160597626 -57439532 + (CA)n Simple_repeat Simple_repeat 1 25 0 222 263 200 11 chr3 160597976 160598071 -57439087 - L2 LINE L2 -6 3307 3195 472 211 8 8 chr3 160598087 160598220 -57438938 + CT-rich Low_complexity Low_complexity 3 135 0 1450 130 28 36 chr3 160598297 160598544 -57438614 - THE1B LTR MaLR -119 245 1 11887 85 5 0 chr3 160598544 160600117 -57437041 - THE1B-int LTR MaLR 0 1580 1 2372 113 22 17 chr3 160600117 160600479 -57436679 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr3 160602169 160602192 -57434966 + AT_rich Low_complexity Low_complexity 1 23 0 831 296 45 21 chr3 160605106 160605485 -57431673 + HAL1 LINE L1 1402 1789 -718 315 238 33 33 chr3 160605540 160605691 -57431467 + HAL1 LINE L1 2012 2162 -345 31 0 0 0 chr3 160606887 160606918 -57430240 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr3 160608837 160608861 -57428297 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr3 160610163 160610198 -57426960 + AT_rich Low_complexity Low_complexity 1 35 0 23 97 0 0 chr3 160610774 160610846 -57426312 + AT_rich Low_complexity Low_complexity 1 72 0 36 40 0 0 chr3 160610881 160610931 -57426227 + AT_rich Low_complexity Low_complexity 1 50 0 1650 134 19 0 chr3 160612230 160612492 -57424666 + L1PA16 LINE L1 5891 6157 -9 264 289 195 8 chr3 160613126 160613254 -57423904 - MIR SINE MIR -66 196 45 21 36 0 0 chr3 160613379 160613407 -57423751 + AT_rich Low_complexity Low_complexity 1 28 0 313 305 39 13 chr3 160613653 160613807 -57423351 - L2 LINE L2 -366 2948 2791 1197 166 90 62 chr3 160614468 160614757 -57422401 + AluSx SINE Alu 1 297 -5 599 200 18 82 chr3 160615805 160615975 -57421183 - MIR SINE MIR 0 262 104 2359 77 0 6 chr3 160616617 160616928 -57420230 + AluY SINE Alu 1 309 -2 270 274 42 0 chr3 160616928 160617023 -57420135 + Charlie8 DNA MER1_type 100 198 -2219 2096 74 0 11 chr3 160617550 160617881 -57419277 + AluSg SINE Alu 1 328 0 254 341 101 22 chr3 160619171 160619309 -57417849 + MIR SINE MIR 6 154 -108 206 219 27 14 chr3 160619919 160619992 -57417166 + (TA)n Simple_repeat Simple_repeat 2 75 0 5992 70 1 0 chr3 160620354 160621127 -57416031 - L1PA7 LINE L1 0 6154 5381 1167 57 0 0 chr3 160621128 160621286 -57415872 + L1PA7 LINE L1 5224 5381 -765 243 211 53 0 chr3 160621313 160621408 -57415750 + (TA)n Simple_repeat Simple_repeat 1 100 0 21 57 0 0 chr3 160621567 160621602 -57415556 + AT_rich Low_complexity Low_complexity 1 35 0 1408 204 3 48 chr3 160622457 160622766 -57414392 + AluJb SINE Alu 1 295 -17 777 264 117 9 chr3 160622789 160623020 -57414138 - MIR SINE MIR -5 257 2 29 60 0 0 chr3 160623707 160623757 -57413401 + AT_rich Low_complexity Low_complexity 1 50 0 18774 93 15 4 chr3 160628157 160630774 -57406384 - L1P LINE L1 -3500 2646 1 2624 119 48 88 chr3 160630785 160631259 -57405899 + HSMAR2 DNA Mariner 787 1239 -63 1787 157 20 3 chr3 160631259 160631564 -57405594 - AluSx SINE Alu 0 312 3 2624 119 48 88 chr3 160631564 160631625 -57405533 + HSMAR2 DNA Mariner 1239 1301 -1 1851 149 3 7 chr3 160631625 160631921 -57405237 - AluSp SINE Alu -18 295 1 309 309 50 22 chr3 160632179 160632318 -57404840 - L2 LINE L2 0 3313 3171 187 261 43 0 chr3 160632465 160632511 -57404647 - L2 LINE L2 -231 3041 2994 1553 204 3 20 chr3 160632524 160632828 -57404330 + AluJo SINE Alu 2 300 -12 2089 118 7 0 chr3 160632863 160633152 -57404006 + AluSq SINE Alu 1 291 -22 680 230 0 0 chr3 160633200 160633326 -57403832 + FLAM_A SINE Alu 1 126 -7 543 304 70 0 chr3 160633508 160633679 -57403479 + MER102a DNA MER1_type 145 327 -3 4612 22 4 0 chr3 160633937 160634473 -57402685 - L1PA3 LINE L1 -3 6152 5615 2102 138 0 0 chr3 160634532 160634830 -57402328 - AluSq SINE Alu -15 298 1 246 68 34 51 chr3 160637160 160637219 -57399939 + (GAAA)n Simple_repeat Simple_repeat 2 59 0 684 344 131 32 chr3 160637241 160638125 -57399033 - L2 LINE L2 -1 3271 2301 201 178 0 0 chr3 160638147 160638192 -57398966 + (TG)n Simple_repeat Simple_repeat 1 45 0 471 292 43 24 chr3 160638662 160638871 -57398287 - MLT1J LTR MaLR -23 488 276 2173 204 93 41 chr3 160639030 160639797 -57397361 - MER63C DNA MER1_type -47 883 1 182 310 35 46 chr3 160639797 160639884 -57397274 + MER5A DNA MER1_type 47 132 -57 21 0 0 0 chr3 160641342 160641363 -57395795 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 160641575 160641598 -57395560 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr3 160641910 160641936 -57395222 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 160642028 160642049 -57395109 + AT_rich Low_complexity Low_complexity 1 21 0 180 152 0 0 chr3 160645023 160645056 -57392102 + GA-rich Low_complexity Low_complexity 2 34 0 2052 121 7 16 chr3 160646412 160646718 -57390440 + AluSx SINE Alu 1 303 -9 360 263 22 89 chr3 160646763 160646942 -57390216 - MIR SINE MIR -22 240 74 25 0 0 0 chr3 160648443 160648468 -57388690 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr3 160649634 160649662 -57387496 + AT_rich Low_complexity Low_complexity 1 28 0 648 215 0 8 chr3 160649937 160650067 -57387091 + FLAM_A SINE Alu 1 129 -4 23 0 0 0 chr3 160651248 160651271 -57385887 + AT_rich Low_complexity Low_complexity 1 23 0 356 344 16 65 chr3 160652324 160652510 -57384648 - MER5A DNA MER1_type 0 189 13 264 301 140 33 chr3 160652752 160653024 -57384134 - L2 LINE L2 -2 3311 3011 756 295 47 0 chr3 160653115 160653349 -57383809 - MIR SINE MIR 0 262 18 588 280 42 16 chr3 160653402 160653595 -57383563 - MIR SINE MIR -6 256 59 1999 137 14 3 chr3 160653729 160654021 -57383137 - AluJb SINE Alu -10 302 8 283 185 46 46 chr3 160654811 160654876 -57382282 - MIR SINE MIR -110 152 88 2111 115 0 0 chr3 160655748 160656027 -57381131 - AluSx SINE Alu -13 299 21 219 345 0 0 chr3 160656119 160656174 -57380984 + L2 LINE L2 3006 3060 -253 333 213 93 0 chr3 160656594 160656669 -57380489 - MER94 DNA DNA -52 82 1 214 293 111 20 chr3 160656673 160656772 -57380386 + MIR SINE MIR 86 193 -69 365 343 50 28 chr3 160656962 160657245 -57379913 - L2 LINE L2 -800 2514 2226 1878 144 0 27 chr3 160657253 160657393 -57379765 + AluSx SINE Alu 2 144 -158 1850 143 9 54 chr3 160657393 160657541 -57379617 + AluSx SINE Alu 1 129 -183 2409 95 3 0 chr3 160657541 160657845 -57379313 + AluSq SINE Alu 1 305 -8 1850 143 9 54 chr3 160657845 160658011 -57379147 + AluSx SINE Alu 129 301 -11 1878 144 0 27 chr3 160658011 160658169 -57378989 + AluSx SINE Alu 144 292 -10 944 199 94 20 chr3 160659962 160660163 -57376995 + AluJo SINE Alu 73 288 -24 766 181 53 31 chr3 160660291 160660518 -57376640 + L1MA4 LINE L1 6068 6299 -1 319 302 148 39 chr3 160661128 160661281 -57375877 + MIR3 SINE MIR 4 181 -27 528 30 0 0 chr3 160664595 160664661 -57372497 + (TTTC)n Simple_repeat Simple_repeat 4 69 0 24 0 0 0 chr3 160665172 160665196 -57371962 + GC_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr3 160665517 160665539 -57371619 + (A)n Simple_repeat Simple_repeat 1 22 0 224 160 0 20 chr3 160665752 160665802 -57371356 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 290 184 13 0 chr3 160667670 160667746 -57369412 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 25 0 0 0 chr3 160668198 160668223 -57368935 + AT_rich Low_complexity Low_complexity 1 25 0 180 247 35 0 chr3 160671418 160671503 -57365655 + CT-rich Low_complexity Low_complexity 3 90 0 201 300 0 0 chr3 160671780 160671830 -57365328 + C-rich Low_complexity Low_complexity 3 52 0 237 214 0 0 chr3 160672266 160672308 -57364850 + L2 LINE L2 3261 3302 -11 21 36 0 0 chr3 160673191 160673219 -57363939 + AT_rich Low_complexity Low_complexity 1 28 0 369 0 0 0 chr3 160674059 160674100 -57363058 + (CA)n Simple_repeat Simple_repeat 2 42 0 309 78 294 0 chr3 160674467 160674518 -57362640 + MER5A DNA MER1_type 9 74 -115 225 0 0 0 chr3 160675681 160675706 -57361452 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 894 238 107 27 chr3 160676607 160676868 -57360290 - MSTD LTR MaLR -114 282 1 5978 67 1 0 chr3 160677148 160677944 -57359214 - L1PA7 LINE L1 -8 6146 5350 912 93 0 0 chr3 160677946 160678085 -57359073 + L1P LINE L1 2636 2774 -3372 346 107 0 0 chr3 160678079 160678135 -57359023 - L1PA7 LINE L1 -805 5350 5295 * 228 184 0 0 chr3 160678529 160678567 -57358591 + MIR SINE MIR 113 150 -112 423 97 0 0 chr3 160679500 160679562 -57357596 - L1P4 LINE L1 -436 5738 5677 251 173 0 0 chr3 160679570 160679622 -57357536 + L1MA10 LINE L1 6277 6328 -6 203 114 23 0 chr3 160679625 160679669 -57357489 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 6571 32 0 2 chr3 160679671 160680488 -57356670 - L1PA5 LINE L1 -11 6143 5329 2269 98 56 63 chr3 160680491 160681055 -57356103 - L1P4 LINE L1 -475 5693 5142 528 247 95 82 chr3 160681948 160682264 -57354894 - MLT1I LTR MaLR -9 400 81 31 0 0 0 chr3 160682375 160682406 -57354752 + AT_rich Low_complexity Low_complexity 1 31 0 314 331 6 6 chr3 160682515 160682690 -57354468 - L1ME4a LINE L1 -219 5902 5728 194 320 31 0 chr3 160682763 160682860 -57354298 + MIR SINE MIR 131 230 -32 601 266 5 27 chr3 160683022 160683210 -57353948 + MER20 DNA MER1_type 1 184 -35 21 0 0 0 chr3 160684282 160684303 -57352855 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr3 160686022 160686050 -57351108 + AT_rich Low_complexity Low_complexity 1 28 0 229 376 59 18 chr3 160686310 160686480 -57350678 + L2 LINE L2 2916 3092 -180 27 73 0 0 chr3 160687175 160687230 -57349928 + AT_rich Low_complexity Low_complexity 1 55 0 30 0 0 0 chr3 160690904 160690934 -57346224 + AT_rich Low_complexity Low_complexity 1 30 0 198 191 0 0 chr3 160691067 160691109 -57346049 + (TG)n Simple_repeat Simple_repeat 1 42 0 324 0 0 0 chr3 160691388 160691424 -57345734 + (A)n Simple_repeat Simple_repeat 1 36 0 333 0 0 0 chr3 160691988 160692025 -57345133 + (A)n Simple_repeat Simple_repeat 1 37 0 210 118 0 0 chr3 160692221 160692255 -57344903 + (T)n Simple_repeat Simple_repeat 1 34 0 318 293 9 26 chr3 160693403 160693519 -57343639 + MIR SINE MIR 53 166 -96 781 37 28 0 chr3 160695973 160696081 -57341077 + (TAGA)n Simple_repeat Simple_repeat 4 114 0 2620 116 12 17 chr3 160699221 160699642 -57337516 - Tigger3b DNA MER2_type -610 621 203 13390 126 39 56 chr3 160699642 160700065 -57337093 - Tigger1 DNA MER2_type 0 2418 1989 1664 177 11 3 chr3 160700065 160700383 -57336775 - AluJo SINE Alu 0 320 1 13390 126 39 56 chr3 160700383 160700808 -57336350 - Tigger1 DNA MER2_type -429 1989 1558 2121 121 7 0 chr3 160700808 160701113 -57336045 - AluSp SINE Alu -6 307 1 13390 126 39 56 chr3 160701113 160702698 -57334460 - Tigger1 DNA MER2_type -860 1558 24 2135 124 3 0 chr3 160702709 160703000 -57334158 - AluSp SINE Alu -20 293 2 1071 188 56 5 chr3 160703004 160703201 -57333957 - Tigger3b DNA MER2_type -1024 207 1 2763 261 112 41 chr3 160703310 160704431 -57332727 - L2 LINE L2 -331 2982 1790 1568 189 0 41 chr3 160704980 160705297 -57331861 - AluJo SINE Alu -8 304 1 27 0 0 0 chr3 160705317 160705344 -57331814 + AT_rich Low_complexity Low_complexity 1 27 0 1792 153 7 0 chr3 160705344 160705619 -57331539 - AluSx SINE Alu -35 277 1 324 120 0 0 chr3 160706521 160706571 -57330587 + (T)n Simple_repeat Simple_repeat 1 50 0 443 239 11 85 chr3 160707043 160707064 -57330094 - L1MC5 LINE L1 -53 7908 7887 1543 171 7 27 chr3 160707064 160707357 -57329801 + AluJo SINE Alu 22 308 -4 443 239 11 85 chr3 160707357 160707523 -57329635 - L1MC5 LINE L1 -74 7887 7735 1504 65 20 0 chr3 160708086 160708287 -57328871 - L1PA14 LINE L1 0 6161 5957 234 236 0 96 chr3 160709226 160709245 -57327913 - L1MA10 LINE L1 0 6334 6316 649 196 112 71 chr3 160709245 160709469 -57327689 - L1ME1 LINE L1 -7 6159 5927 832 141 0 0 chr3 160709570 160709691 -57327467 - AluSc SINE Alu -187 122 2 304 197 68 0 chr3 160709985 160710117 -57327041 + (TA)n Simple_repeat Simple_repeat 1 141 0 29 70 0 0 chr3 160710991 160711048 -57326110 + AT_rich Low_complexity Low_complexity 1 57 0 311 246 15 82 chr3 160711066 160711200 -57325958 - L1MC4a LINE L1 -1916 5892 5768 28 29 0 0 chr3 160711207 160711242 -57325916 + AT_rich Low_complexity Low_complexity 1 35 0 931 98 16 67 chr3 160711273 160711467 -57325691 - L1MA7 LINE L1 -12 6279 6096 383 284 189 0 chr3 160711511 160711733 -57325425 - L1MC4a LINE L1 -2081 5727 5464 25 31 0 0 chr3 160712651 160712683 -57324475 + AT_rich Low_complexity Low_complexity 1 32 0 362 302 93 19 chr3 160714155 160714338 -57322820 + MIR SINE MIR 2 196 -12 286 341 0 12 chr3 160714714 160714796 -57322362 + MER5A DNA MER1_type 7 87 -102 2373 90 0 6 chr3 160715005 160715316 -57321842 + AluSc SINE Alu 1 309 0 29 28 0 0 chr3 160715535 160715571 -57321587 + AT_rich Low_complexity Low_complexity 1 36 0 1883 248 99 34 chr3 160715572 160716133 -57321025 - L2 LINE L2 -17 3296 2773 1665 188 0 7 chr3 160716133 160716420 -57320738 - AluJo SINE Alu -27 285 1 1883 248 99 34 chr3 160716420 160716914 -57320244 - L2 LINE L2 -540 2773 2177 22 0 0 0 chr3 160717554 160717576 -57319582 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr3 160717851 160717880 -57319278 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr3 160718073 160718100 -57319058 + (TG)n Simple_repeat Simple_repeat 2 28 0 230 371 54 24 chr3 160718458 160718625 -57318533 - L2 LINE L2 -4 3309 3138 292 287 74 28 chr3 160719236 160719344 -57317814 + MIR SINE MIR 125 237 -25 1151 171 18 14 chr3 160719516 160719733 -57317425 - AluSg/x SINE Alu -15 297 80 405 221 39 10 chr3 160720269 160720373 -57316785 + MER94 DNA DNA 1 107 -27 221 308 13 115 chr3 160720417 160720573 -57316585 + L2 LINE L2 2943 3082 -190 436 209 39 31 chr3 160722496 160722625 -57314533 - L1ME LINE L1 -456 5714 5585 25 0 0 0 chr3 160724095 160724120 -57313038 + AT_rich Low_complexity Low_complexity 1 25 0 272 311 82 38 chr3 160724697 160724880 -57312278 - LTR67 LTR ERVL -17 540 350 524 285 26 47 chr3 160726122 160726315 -57310843 + MIR SINE MIR 3 191 -71 476 271 138 0 chr3 160726406 160726594 -57310564 - L2 LINE L2 -2266 1048 835 949 215 42 0 chr3 160726700 160726960 -57310198 - MER3 DNA MER1_type 0 2513 2243 539 175 9 28 chr3 160726969 160727093 -57310065 - MER3 DNA MER1_type -53 156 50 916 284 147 59 chr3 160727094 160727567 -57309591 - L2 LINE L2 -2504 810 260 1997 144 0 0 chr3 160727567 160727875 -57309283 + AluSx SINE Alu 1 308 0 916 284 147 59 chr3 160727875 160728058 -57309100 - L2 LINE L2 -3054 260 95 288 222 33 33 chr3 160728640 160728730 -57308428 - HAL1b LINE L1 -869 479 390 4648 199 46 29 chr3 160728847 160729822 -57307336 - L1MB4 LINE L1 -1 6179 5222 1387 231 7 14 chr3 160729822 160730112 -57307046 - AluJo SINE Alu -22 290 3 4648 199 46 29 chr3 160730112 160731263 -57305895 - L1MB4 LINE L1 -958 5222 4012 189 431 10 0 chr3 160731866 160731968 -57305190 + L2 LINE L2 3134 3236 -36 1918 141 0 3 chr3 160732356 160732666 -57304492 + AluJb SINE Alu 1 309 0 2065 85 0 0 chr3 160734184 160734443 -57302715 + AluSc SINE Alu 34 292 -17 21 71 0 0 chr3 160734998 160735040 -57302118 + AT_rich Low_complexity Low_complexity 1 42 0 1733 167 0 14 chr3 160735156 160735450 -57301708 + AluJo SINE Alu 23 312 0 331 254 26 0 chr3 160735494 160735608 -57301550 + (TA)n Simple_repeat Simple_repeat 2 118 0 271 250 74 134 chr3 160735697 160735827 -57301331 - MIR SINE MIR -28 234 121 2099 110 0 7 chr3 160735827 160736118 -57301040 + AluSg1 SINE Alu 1 289 -20 271 250 74 134 chr3 160736118 160736203 -57300955 - MIR SINE MIR -141 121 32 1977 139 7 3 chr3 160736526 160736821 -57300337 + AluJb SINE Alu 1 296 -16 316 331 87 7 chr3 160737073 160737228 -57299930 - MIR SINE MIR -62 146 13 34 0 0 0 chr3 160737290 160737324 -57299834 + AT_rich Low_complexity Low_complexity 1 34 0 2118 84 13 32 chr3 160737324 160737633 -57299525 - AluSg SINE Alu -2 308 6 2095 142 0 0 chr3 160737642 160737945 -57299213 - AluSx SINE Alu -9 303 1 2113 232 33 60 chr3 160737947 160738645 -57298513 - L1ME1 LINE L1 -33 6133 5455 1714 117 131 0 chr3 160738751 160739025 -57298133 + AluSp SINE Alu 1 310 -3 26 30 0 0 chr3 160739279 160739312 -57297846 + AT_rich Low_complexity Low_complexity 1 33 0 488 241 28 44 chr3 160739560 160739718 -57297440 + MIR SINE MIR 45 202 -60 325 0 0 60 chr3 160741411 160741461 -57295697 - L1HS LINE L1 0 6155 6109 223 309 37 12 chr3 160741843 160741924 -57295234 - MIR3 SINE MIR -125 83 1 322 239 0 0 chr3 160742072 160742139 -57295019 + L2 LINE L2 3246 3312 -1 278 394 71 8 chr3 160742221 160742348 -57294810 - MIR3 SINE MIR -66 142 8 193 233 70 0 chr3 160744058 160744101 -57293057 - MIR SINE MIR -66 142 97 3165 77 0 7 chr3 160744731 160745158 -57292000 + L1PA7 LINE L1 5729 6152 -2 2041 112 0 7 chr3 160745763 160746067 -57291091 + AluSc SINE Alu 1 302 -7 269 345 11 102 chr3 160746773 160746950 -57290208 - L2 LINE L2 -83 3189 3029 339 231 0 0 chr3 160747718 160747811 -57289347 + (TG)n Simple_repeat Simple_repeat 1 93 0 304 225 62 12 chr3 160747760 160747840 -57289318 + L1MCa LINE L1 2006 2089 -4337 * 362 297 155 14 chr3 160749319 160749467 -57287691 + MIR3 SINE MIR 30 198 -10 38 75 0 0 chr3 160749715 160749795 -57287363 + AT_rich Low_complexity Low_complexity 1 80 0 21 0 0 0 chr3 160751126 160751147 -57286011 + AT_rich Low_complexity Low_complexity 1 21 0 287 315 95 15 chr3 160752431 160752631 -57284527 - L2 LINE L2 0 3313 3098 375 263 94 0 chr3 160753464 160753624 -57283534 - MIR SINE MIR -3 259 85 29 60 0 0 chr3 160753668 160753718 -57283440 + AT_rich Low_complexity Low_complexity 1 50 0 266 301 134 53 chr3 160754933 160755142 -57282016 + L2 LINE L2 2521 2746 -568 1336 200 145 8 chr3 160755144 160755524 -57281634 + L1ME1 LINE L1 5704 6135 -31 234 167 0 0 chr3 160755570 160755630 -57281528 + (CA)n Simple_repeat Simple_repeat 1 60 0 191 297 62 39 chr3 160755831 160755959 -57281199 + L2 LINE L2 2736 2866 -448 327 234 16 0 chr3 160756443 160756507 -57280651 + Tigger3(Golem) DNA MER2_type 1 65 -2964 664 131 0 16 chr3 160756668 160756790 -57280368 + (TTCC)n Simple_repeat Simple_repeat 1 120 0 380 286 147 55 chr3 160757432 160757670 -57279488 + MIR SINE MIR 3 262 0 1469 186 50 4 chr3 160757808 160758087 -57279071 + AluJo SINE Alu 1 292 -20 274 164 0 30 chr3 160759160 160759227 -57277931 + GA-rich Low_complexity Low_complexity 6 70 0 182 61 0 30 chr3 160762089 160762122 -57275036 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 207 69 0 0 chr3 160762824 160762853 -57274305 + (T)n Simple_repeat Simple_repeat 1 29 0 26 0 0 0 chr3 160762904 160762930 -57274228 + AT_rich Low_complexity Low_complexity 1 26 0 493 287 33 0 chr3 160764702 160764852 -57272306 - MIR SINE MIR -37 225 71 315 49 0 0 chr3 160774842 160774883 -57262275 + (TC)n Simple_repeat Simple_repeat 2 42 0 215 0 67 0 chr3 160774956 160774986 -57262172 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 192 152 0 0 chr3 160777804 160777837 -57259321 + CT-rich Low_complexity Low_complexity 3 35 0 28 0 0 0 chr3 160779603 160779631 -57257527 + AT_rich Low_complexity Low_complexity 1 28 0 2184 106 0 0 chr3 160780389 160780691 -57256467 - AluSx SINE Alu -10 302 1 550 194 19 69 chr3 160780824 160780984 -57256174 - Charlie4 DNA MER1_type -1803 158 7 202 97 32 0 chr3 160783385 160783416 -57253742 + GA-rich Low_complexity Low_complexity 2 33 0 228 35 0 0 chr3 160789287 160789316 -57247842 + (TG)n Simple_repeat Simple_repeat 2 30 0 381 93 0 0 chr3 160789762 160789816 -57247342 + (A)n Simple_repeat Simple_repeat 1 54 0 265 263 25 0 chr3 160790282 160790362 -57246796 + GA-rich Low_complexity Low_complexity 2 83 0 23 33 0 0 chr3 160790641 160790671 -57246487 + GC_rich Low_complexity Low_complexity 1 30 0 350 113 0 16 chr3 160790707 160790769 -57246389 + (TCC)n Simple_repeat Simple_repeat 1 61 0 23 33 0 0 chr3 160792996 160793026 -57244132 + AT_rich Low_complexity Low_complexity 1 30 0 387 262 28 35 chr3 160794642 160794787 -57242371 + MER103 DNA DNA 17 160 -6 2683 74 6 0 chr3 160795180 160795518 -57241640 - L1PA7 LINE L1 -11 6143 5804 629 173 19 0 chr3 160795759 160795863 -57241295 - MER20 DNA MER1_type -4 215 110 270 56 0 0 chr3 160796420 160796456 -57240702 + (TC)n Simple_repeat Simple_repeat 1 36 0 189 74 0 0 chr3 160796724 160796751 -57240407 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 252 0 0 0 chr3 160798343 160798371 -57238787 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 2294 94 0 0 chr3 160799373 160799670 -57237488 - AluSc SINE Alu -12 297 1 219 139 0 0 chr3 160800406 160800442 -57236716 + (TA)n Simple_repeat Simple_repeat 2 37 0 2322 67 7 0 chr3 160800636 160800944 -57236214 - AluSp SINE Alu 0 310 1 673 126 13 106 chr3 160800971 160801122 -57236036 + MER20 DNA MER1_type 20 156 -63 414 0 0 0 chr3 160801278 160801324 -57235834 + (CA)n Simple_repeat Simple_repeat 2 47 0 303 28 0 0 chr3 160801324 160801360 -57235798 + (GA)n Simple_repeat Simple_repeat 1 36 0 2324 210 5 0 chr3 160801361 160801780 -57235378 + MER54A LTR ERVL 475 895 -6 217 60 0 80 chr3 160801981 160802031 -57235127 + (AGGGGG)n Simple_repeat Simple_repeat 2 47 0 210 118 0 0 chr3 160805369 160805403 -57231755 + (T)n Simple_repeat Simple_repeat 1 34 0 258 158 26 53 chr3 160810515 160810591 -57226567 + A-rich Low_complexity Low_complexity 2 75 0 305 24 24 0 chr3 160810760 160810802 -57226356 + (TG)n Simple_repeat Simple_repeat 2 44 0 183 80 0 0 chr3 160815250 160815275 -57221883 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 246 246 14 14 chr3 160815528 160815597 -57221561 + CT-rich Low_complexity Low_complexity 5 73 0 562 241 57 13 chr3 160816459 160816617 -57220541 - L1MC5 LINE L1 -48 7913 7749 26 30 0 0 chr3 160817056 160817089 -57220069 + AT_rich Low_complexity Low_complexity 1 33 0 651 213 109 23 chr3 160817110 160817331 -57219827 + L1MC5 LINE L1 7687 7926 -35 351 181 120 90 chr3 160818510 160818643 -57218515 - MER5A DNA MER1_type 0 189 53 1278 161 112 22 chr3 160818651 160818918 -57218240 - AluJb SINE Alu -21 291 1 1982 131 17 47 chr3 160819157 160819517 -57217641 - L1MA5A LINE L1 0 6297 5949 474 271 44 44 chr3 160819820 160820049 -57217109 + L2 LINE L2 3083 3311 -2 871 275 77 45 chr3 160820794 160821198 -57215960 - L2 LINE L2 0 3313 2897 294 277 6 157 chr3 160821201 160821360 -57215798 - L2 LINE L2 -2 3270 3136 2453 73 13 0 chr3 160822451 160822753 -57214405 - AluSp SINE Alu -7 306 1 365 232 63 11 chr3 160823082 160823177 -57213981 - L2 LINE L2 -58 3255 3156 3742 219 40 26 chr3 160873206 160874089 -57163069 + MER45B DNA AcHobo 146 1040 0 252 145 0 40 chr3 160874122 160874173 -57162985 + (TTCC)n Simple_repeat Simple_repeat 1 50 -23 1935 114 11 0 chr3 160874173 160874436 -57162722 - AluSg SINE Alu -9 301 36 252 145 0 40 chr3 160874436 160874460 -57162698 + (TTCC)n Simple_repeat Simple_repeat 50 73 0 1972 129 4 0 chr3 160874562 160874834 -57162324 - AluSx SINE Alu -39 273 1 751 324 55 37 chr3 160875234 160875837 -57161321 + L2 LINE L2 2442 3063 -250 2125 129 33 33 chr3 160875837 160876201 -57160957 + THE1B LTR MaLR 1 364 0 751 324 55 37 chr3 160876201 160876345 -57160813 + L2 LINE L2 3063 3203 -110 993 300 16 50 chr3 160876497 160876877 -57160281 - L2 LINE L2 -33 3280 2914 311 231 13 26 chr3 160876990 160877068 -57160090 - L1MC/D LINE L1 -2196 5612 5536 845 338 23 32 chr3 160877099 160877442 -57159716 - L2 LINE L2 -436 2878 2539 285 300 100 54 chr3 160879977 160880107 -57157051 + L2 LINE L2 3137 3272 0 703 235 54 6 chr3 160880145 160880311 -57156847 + MLT1E3 LTR MaLR 451 624 0 762 215 161 0 chr3 160880449 160880672 -57156486 + L1ME1 LINE L1 5422 5655 -511 416 151 14 0 chr3 160880772 160880845 -57156313 + L1ME1 LINE L1 5850 5923 -243 1694 238 89 9 chr3 160880848 160881310 -57155848 - MLT1E2 LTR MaLR 0 626 128 788 251 31 14 chr3 160881365 160881588 -57155570 + L1ME1 LINE L1 5922 6148 -18 1495 203 39 42 chr3 160882837 160883196 -57153962 + MLT1A2 LTR MaLR 1 358 -16 2210 107 74 3 chr3 160883199 160883536 -57153622 + THE1B LTR MaLR 4 364 0 4442 43 0 0 chr3 160884841 160885375 -57151783 + L1PA5 LINE L1 5619 6152 -2 1406 219 32 4 chr3 160888327 160888605 -57148553 + AluJo SINE Alu 1 286 -26 296 83 21 0 chr3 160888605 160888653 -57148505 + (GGGAA)n Simple_repeat Simple_repeat 3 51 0 21 0 0 0 chr3 160888781 160888802 -57148356 + AT_rich Low_complexity Low_complexity 1 21 0 219 36 0 0 chr3 160889817 160889845 -57147313 + (CA)n Simple_repeat Simple_repeat 2 29 0 12561 48 1 0 chr3 160891075 160892791 -57144367 + L1P2 LINE L1 3823 5540 -614 22 35 0 0 chr3 160893443 160893472 -57143686 + AT_rich Low_complexity Low_complexity 1 29 0 467 331 22 5 chr3 160893628 160893812 -57143346 + L2 LINE L2 2353 2539 -775 1164 279 159 40 chr3 160894208 160894869 -57142289 + L1MC4a LINE L1 5618 6199 -1609 1674 189 0 0 chr3 160894869 160895149 -57142009 - AluJb SINE Alu -10 302 23 1164 279 159 40 chr3 160895149 160895667 -57141491 + L1MC4a LINE L1 6199 6938 -870 303 149 0 45 chr3 160895701 160895768 -57141390 + L1MB7 LINE L1 4583 4646 -1500 3691 195 24 19 chr3 160895773 160896731 -57140427 + L1MB7 LINE L1 5143 6100 -84 183 80 0 0 chr3 160896930 160896955 -57140203 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 209 105 0 26 chr3 160896961 160896999 -57140159 + (TTCCC)n Simple_repeat Simple_repeat 4 40 0 * 462 83 0 36 chr3 160896991 160897075 -57140083 + (TTTC)n Simple_repeat Simple_repeat 1 81 0 1973 142 0 16 chr3 160897532 160897835 -57139323 - AluSx SINE Alu -14 298 1 1590 198 75 26 chr3 160899015 160899363 -57137795 - MLT1A1 LTR MaLR 0 365 1 2179 94 24 0 chr3 160899462 160899750 -57137408 + AluY SINE Alu 1 295 -16 329 329 25 31 chr3 160901796 160901957 -57135201 - L2 LINE L2 -76 3237 3078 799 291 25 17 chr3 160902109 160902350 -57134808 + MLT1J LTR MaLR 226 468 -43 3178 303 91 23 chr3 160902391 160903894 -57133264 - L2 LINE L2 -280 3033 1427 1479 73 0 0 chr3 160904163 160904372 -57132786 - AluY SINE Alu 0 313 105 1925 130 17 7 chr3 160904837 160905129 -57132029 - AluSx SINE Alu -17 295 1 1995 153 73 34 chr3 160906717 160907129 -57130029 - MSTA LTR MaLR 0 428 1 24 0 0 0 chr3 160908377 160908401 -57128757 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 160910119 160910140 -57127018 + AT_rich Low_complexity Low_complexity 1 21 0 344 290 71 94 chr3 160911717 160912014 -57125144 - MLT1K LTR MaLR -42 546 257 324 48 0 0 chr3 160912175 160912217 -57124941 + (CA)n Simple_repeat Simple_repeat 2 43 0 22 80 0 0 chr3 160912588 160912638 -57124520 + AT_rich Low_complexity Low_complexity 1 50 0 2294 99 3 0 chr3 160912849 160913151 -57124007 - AluSp SINE Alu -10 303 1 22 0 0 0 chr3 160913587 160913609 -57123549 + AT_rich Low_complexity Low_complexity 1 22 0 336 263 71 10 chr3 160913640 160913739 -57123419 + MIR SINE MIR 98 202 -60 22 0 0 0 chr3 160913769 160913791 -57123367 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 160914350 160914372 -57122786 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 160914497 160914518 -57122640 + AT_rich Low_complexity Low_complexity 1 21 0 196 29 0 57 chr3 160918120 160918155 -57119003 + (TA)n Simple_repeat Simple_repeat 1 33 0 254 175 0 18 chr3 160918324 160918381 -57118777 + (CA)n Simple_repeat Simple_repeat 2 57 0 601 299 84 54 chr3 160918381 160918773 -57118385 - MLT1I LTR MaLR -3 406 3 974 245 150 9 chr3 160918924 160919271 -57117887 + MSTD LTR MaLR 1 396 0 620 59 12 0 chr3 160919793 160919878 -57117280 + (GAAA)n Simple_repeat Simple_repeat 4 89 0 303 305 66 61 chr3 160920052 160920249 -57116909 + L1MC/D LINE L1 5453 5650 -2158 412 148 34 0 chr3 160920286 160920374 -57116784 + GA-rich Low_complexity Low_complexity 3 93 0 30 0 0 0 chr3 160920472 160920502 -57116656 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 160922742 160922763 -57114395 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr3 160923793 160923841 -57113317 + AT_rich Low_complexity Low_complexity 1 48 0 275 296 73 57 chr3 160924059 160924373 -57112785 + L1ME LINE L1 5310 5628 -493 26 0 0 0 chr3 160924984 160925010 -57112148 + AT_rich Low_complexity Low_complexity 1 26 0 236 233 150 0 chr3 160925890 160925950 -57111208 + L2 LINE L2 3203 3271 -1 213 336 63 28 chr3 160927125 160927268 -57109890 - L2 LINE L2 -4 3268 3121 594 156 0 57 chr3 160928114 160928236 -57108922 + MLT1E2 LTR MaLR 4 118 -508 1074 213 71 0 chr3 160928240 160928451 -57108707 + AluJo SINE Alu 9 234 -78 1043 238 103 34 chr3 160928551 160928986 -57108172 + MLT1E2 LTR MaLR 122 624 0 922 246 39 42 chr3 160930563 160930847 -57106311 + MER63B DNA MER1_type 7 289 -147 975 148 62 11 chr3 160930848 160931024 -57106134 - MLT2B2 LTR ERVL -2 513 329 922 231 116 67 chr3 160931043 160931389 -57105769 + MLT1A1 LTR MaLR 1 363 -2 * 1643 197 27 7 chr3 160931389 160931676 -57105482 - MLT2B2 LTR ERVL -193 322 30 383 286 11 0 chr3 160931673 160931764 -57105394 + MER63B DNA MER1_type 343 434 -1 * 192 149 0 0 chr3 160932913 160932960 -57104198 + (TG)n Simple_repeat Simple_repeat 2 48 0 29 60 0 0 chr3 160933808 160933858 -57103300 + AT_rich Low_complexity Low_complexity 1 50 0 1843 100 0 31 chr3 160934175 160934465 -57102693 - L1PA8 LINE L1 0 6172 5892 373 222 40 71 chr3 160935733 160935832 -57101326 - L2 LINE L2 -11 3302 3207 182 200 0 0 chr3 160936636 160936671 -57100487 + MIR SINE MIR 81 115 -147 2004 125 56 39 chr3 160937227 160937564 -57099594 + THE1B LTR MaLR 22 364 0 10451 195 37 18 chr3 160938200 160938625 -57098533 + L1PA14 LINE L1 3244 3659 -2502 513 58 0 0 chr3 160938625 160938694 -57098464 + (CA)n Simple_repeat Simple_repeat 1 69 0 10451 195 37 18 chr3 160938694 160940171 -57096987 + L1PA14 LINE L1 3659 5106 -1055 1879 126 19 0 chr3 160940171 160940440 -57096718 + AluSx SINE Alu 39 312 0 10451 195 37 18 chr3 160940440 160940775 -57096383 + L1PA14 LINE L1 5106 5433 -728 1951 150 0 0 chr3 160940775 160941075 -57096083 + AluSx SINE Alu 1 300 -12 10451 195 37 18 chr3 160941075 160941701 -57095457 + L1PA14 LINE L1 5433 6161 0 357 316 25 25 chr3 160941713 160941839 -57095319 - MER5B DNA MER1_type -3 175 61 2039 39 0 16 chr3 160941871 160942128 -57095030 - L1PA5 LINE L1 0 6154 5902 763 285 123 9 chr3 160942377 160942777 -57094381 + L2 LINE L2 2601 3052 -261 427 198 45 27 chr3 160943688 160943799 -57093359 - Charlie1 DNA MER1_type -13 2748 2636 462 245 0 91 chr3 160944641 160944707 -57092451 + MIR SINE MIR 97 145 -117 2290 99 0 3 chr3 160944707 160945020 -57092138 - AluSq SINE Alu -1 312 1 462 245 0 91 chr3 160945020 160945096 -57092062 + MIR SINE MIR 145 226 -36 195 250 19 0 chr3 160945663 160945715 -57091443 + MIR SINE MIR 98 150 -112 2168 121 0 7 chr3 160946265 160946571 -57090587 + AluSg SINE Alu 6 309 -1 1371 134 46 38 chr3 160946746 160947007 -57090151 + L1 LINE L1 4072 4334 -1812 8124 174 19 17 chr3 160947007 160949542 -57087616 - L1PB1 LINE L1 -70 6081 3544 918 255 38 25 chr3 160951364 160951599 -57085559 + MIR SINE MIR 3 240 -22 22 0 0 0 chr3 160951678 160951700 -57085458 + AT_rich Low_complexity Low_complexity 1 22 0 249 384 18 0 chr3 160953324 160953436 -57083722 + MIR3 SINE MIR 67 180 -28 408 171 79 0 chr3 160953749 160953825 -57083333 - AluJ/FRAM SINE Alu -14 298 217 682 131 0 0 chr3 160953826 160953925 -57083233 - AluSg SINE Alu -211 99 1 23 33 0 0 chr3 160953978 160954008 -57083150 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr3 160954951 160954976 -57082182 + AT_rich Low_complexity Low_complexity 1 25 0 1451 198 58 0 chr3 160956929 160957237 -57079921 - MER58B DNA MER1_type -15 326 1 510 252 133 18 chr3 160958254 160958480 -57078678 + MIR SINE MIR 10 261 -1 366 310 123 5 chr3 160958582 160958769 -57078389 - HAL1 LINE L1 -96 2411 2203 26 74 0 0 chr3 160959219 160959273 -57077885 + AT_rich Low_complexity Low_complexity 1 54 0 308 243 0 0 chr3 160959616 160959690 -57077468 - L1ME3A LINE L1 -8 6162 6089 1719 237 62 25 chr3 160959692 160960177 -57076981 - L1ME3A LINE L1 -233 5937 5435 293 345 0 40 chr3 160960422 160960570 -57076588 + MER5B DNA MER1_type 7 148 -30 31 76 0 0 chr3 160961898 160961964 -57075194 + AT_rich Low_complexity Low_complexity 1 66 0 185 219 0 16 chr3 160962646 160962710 -57074448 + (TG)n Simple_repeat Simple_repeat 2 64 0 21 0 0 0 chr3 160963868 160963889 -57073269 + AT_rich Low_complexity Low_complexity 1 21 0 3523 141 67 3 chr3 160968171 160968801 -57068357 + L1MB3 LINE L1 5510 6179 -4 3138 120 32 6 chr3 160968964 160969431 -57067727 + MER1A DNA MER1_type 49 527 -2 399 253 57 62 chr3 160969705 160969899 -57067259 - Charlie8 DNA MER1_type -2173 244 52 180 77 0 0 chr3 160970084 160970110 -57067048 + (TG)n Simple_repeat Simple_repeat 2 27 0 573 253 147 0 chr3 160970558 160970728 -57066430 - MIR SINE MIR -61 201 7 1067 138 42 0 chr3 160970934 160971123 -57066035 - MER63 DNA MER1_type -815 246 50 1784 262 45 0 chr3 160971199 160971645 -57065513 + MER69 DNA AcHobo 227 692 -534 774 223 60 28 chr3 160971756 160972038 -57065120 + MER69 DNA AcHobo 1451 1741 -785 187 270 79 16 chr3 160972140 160972203 -57064955 + MIR3 SINE MIR 2 68 -140 1979 134 0 7 chr3 160973220 160973512 -57063646 + AluSx SINE Alu 2 291 -21 213 185 46 0 chr3 160975591 160975656 -57061502 + CT-rich Low_complexity Low_complexity 2 69 0 343 287 0 61 chr3 160975657 160975772 -57061386 + L2 LINE L2 3204 3311 -2 561 246 0 8 chr3 160977760 160977894 -57059264 + FLAM_A SINE Alu 1 133 0 529 294 123 68 chr3 160977909 160978219 -57058939 - MER102b DNA MER1_type -14 327 1 449 264 58 45 chr3 160978993 160979120 -57058038 + MIR SINE MIR 34 165 -97 1950 124 7 13 chr3 160979120 160979418 -57057740 + AluSx SINE Alu 3 298 -14 449 264 58 45 chr3 160979418 160979445 -57057713 + MIR SINE MIR 165 190 -72 507 324 59 27 chr3 160980119 160980341 -57056817 - MIR SINE MIR -32 230 2 324 282 107 15 chr3 160981892 160982023 -57055135 + MIR SINE MIR 57 199 -63 392 303 144 14 chr3 160982429 160982637 -57054521 + MIR SINE MIR 23 257 -5 1612 295 60 12 chr3 160984948 160985262 -57051896 - MLT1H1 LTR MaLR 0 555 205 2016 160 0 0 chr3 160985262 160985568 -57051590 - AluJb SINE Alu -6 306 1 1612 295 60 12 chr3 160985568 160985772 -57051386 - MLT1H1 LTR MaLR -350 205 12 43 0 0 0 chr3 160985917 160985960 -57051198 + AT_rich Low_complexity Low_complexity 1 43 0 216 222 37 0 chr3 160986372 160986426 -57050732 + (ATTG)n Simple_repeat Simple_repeat 1 56 0 409 239 46 31 chr3 160986644 160986774 -57050384 + MIR SINE MIR 118 249 -13 5889 138 11 6 chr3 160986827 160988118 -57049040 - L1PB1 LINE L1 -5 6862 5566 2779 242 75 13 chr3 160988101 160989178 -57047980 - L1PB1 LINE L1 -2216 4646 3355 * 10682 142 76 13 chr3 160989279 160991117 -57046041 - L1PB1 LINE L1 -4908 1955 2 2126 104 3 7 chr3 160991189 160991488 -57045670 + AluY SINE Alu 1 298 -13 521 293 31 26 chr3 160991591 160991782 -57045376 + MIR SINE MIR 6 197 -65 470 325 221 18 chr3 160991856 160992348 -57044810 - L3 LINE CR1 -3 1574 983 210 189 19 0 chr3 160992558 160992611 -57044547 + (TA)n Simple_repeat Simple_repeat 2 55 0 219 69 0 0 chr3 160992611 160992640 -57044518 + (CA)n Simple_repeat Simple_repeat 2 30 0 291 122 0 0 chr3 160992640 160992689 -57044469 + (GA)n Simple_repeat Simple_repeat 1 49 0 1141 222 0 34 chr3 160992917 160993156 -57044002 - AluJo SINE Alu -81 231 1 1051 75 0 8 chr3 160993816 160993949 -57043209 + AluSp SINE Alu 1 132 -181 30 0 0 0 chr3 160994752 160994782 -57042376 + AT_rich Low_complexity Low_complexity 1 30 0 1947 194 90 40 chr3 160996244 160996723 -57040435 + MLT1D LTR MaLR 1 503 -2 221 314 100 0 chr3 160996781 160996851 -57040307 - MIR SINE MIR -128 134 58 31 76 0 0 chr3 160998606 160998672 -57038486 + AT_rich Low_complexity Low_complexity 1 66 0 317 248 40 16 chr3 160998789 160998914 -57038244 - L1M4 LINE L1 -2169 3977 3850 251 348 121 7 chr3 160998922 160999063 -57038095 - MIR SINE MIR -86 176 20 218 200 44 0 chr3 160999084 160999129 -57038029 + GA-rich Low_complexity Low_complexity 2 48 0 21 36 0 0 chr3 160999178 160999206 -57037952 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr3 160999379 160999405 -57037753 + AT_rich Low_complexity Low_complexity 1 26 0 212 350 67 0 chr3 160999860 160999980 -57037178 + L2 LINE L2 2814 2941 -331 361 336 7 27 chr3 161000004 161000153 -57037005 - HAL1 LINE L1 -1334 1173 1028 202 396 54 0 chr3 161000154 161000265 -57036893 - L2 LINE L2 -19 3253 3137 471 284 109 35 chr3 161000318 161000519 -57036639 - MIR SINE MIR -16 246 31 216 0 0 0 chr3 161000819 161000843 -57036315 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1364 132 113 17 chr3 161000845 161001090 -57036068 - AluSx SINE Alu -37 275 1 496 257 20 27 chr3 161001104 161001252 -57035906 + MIR SINE MIR 74 220 -42 2887 92 34 7 chr3 161001633 161002048 -57035110 + L1PA11 LINE L1 5743 6168 -6 28 61 0 0 chr3 161002150 161002199 -57034959 + AT_rich Low_complexity Low_complexity 1 49 0 423 223 0 0 chr3 161002852 161002964 -57034194 + (TG)n Simple_repeat Simple_repeat 2 113 0 25 0 0 0 chr3 161003856 161003881 -57033277 + AT_rich Low_complexity Low_complexity 1 25 0 28393 119 15 64 chr3 161004218 161004874 -57032284 - L1PA7 LINE L1 -2 6152 5466 2149 122 0 10 chr3 161004874 161005168 -57031990 - AluSg SINE Alu -19 291 1 28393 119 15 64 chr3 161005168 161010979 -57026179 - L1PA7 LINE L1 -688 5466 12 202 154 46 46 chr3 161011963 161012028 -57025130 + T-rich Low_complexity Low_complexity 2 66 0 549 194 146 0 chr3 161013012 161013177 -57023981 + MER53 DNA DNA 1 189 0 616 218 70 0 chr3 161013634 161013790 -57023368 + L1MC4a LINE L1 6711 6877 -931 720 220 60 19 chr3 161013798 161014066 -57023092 + L1MC4 LINE L1 7025 7303 -739 2324 246 36 24 chr3 161014066 161014132 -57023026 - MER82 DNA MER2_type 0 653 589 1946 154 10 0 chr3 161014132 161014262 -57022896 + AluSx SINE Alu 1 128 -184 189 74 0 0 chr3 161014262 161014289 -57022869 + (TAA)n Simple_repeat Simple_repeat 2 28 0 1946 154 10 0 chr3 161014289 161014451 -57022707 + AluSx SINE Alu 128 296 -16 2324 246 36 24 chr3 161014451 161015019 -57022139 - MER82 DNA MER2_type -64 589 11 1373 242 80 23 chr3 161015029 161015595 -57021563 + L1MC4 LINE L1 7302 7899 -143 290 196 159 7 chr3 161015672 161015808 -57021350 + L1MC4 LINE L1 7892 7995 0 196 324 116 70 chr3 161015854 161016091 -57021067 - L2 LINE L2 -1326 1988 1722 2054 158 0 0 chr3 161016091 161016402 -57020756 - AluSx SINE Alu 0 312 2 196 324 116 70 chr3 161016402 161016578 -57020580 - L2 LINE L2 -1592 1722 1556 43 0 0 0 chr3 161016633 161016676 -57020482 + AT_rich Low_complexity Low_complexity 1 43 0 2904 93 44 7 chr3 161016878 161017306 -57019852 + MLT2A1 LTR ERVL 1 444 0 39862 85 11 8 chr3 161017306 161022518 -57014640 + HERVL-A1 LTR ERVL 1 5236 -418 234 0 0 0 chr3 161022518 161022544 -57014614 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 39862 85 11 8 chr3 161022544 161022965 -57014193 + HERVL-A1 LTR ERVL 5236 5654 0 1350 111 36 9 chr3 161022967 161023192 -57013966 + MLT2A1 LTR ERVL 3 233 -211 7805 20 0 0 chr3 161023594 161024974 -57012184 + L1PA3 LINE L1 4775 6154 -1 5512 38 1 0 chr3 161025207 161026249 -57010909 + L1P2 LINE L1 4684 5726 -428 29 0 0 0 chr3 161076330 161076359 -56960799 + AT_rich Low_complexity Low_complexity 1 29 0 253 291 13 44 chr3 161076382 161076540 -56960618 - L1MEd LINE L1 -4914 1482 1330 2236 93 0 0 chr3 161076552 161076832 -56960326 + AluSg SINE Alu 1 280 -30 216 0 0 0 chr3 161076840 161076864 -56960294 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 257 75 75 12 chr3 161076865 161076945 -56960213 + (TA)n Simple_repeat Simple_repeat 1 85 0 311 274 38 91 chr3 161076968 161077231 -56959927 - L1MEd LINE L1 -5130 1279 1031 24 32 0 0 chr3 161077319 161077350 -56959808 + AT_rich Low_complexity Low_complexity 1 31 0 1620 161 34 24 chr3 161078148 161078440 -56958718 + AluJo SINE Alu 3 297 -15 466 330 35 22 chr3 161078778 161079008 -56958150 + L2 LINE L2 2103 2335 -979 983 268 118 62 chr3 161079008 161079599 -56957559 + L2 LINE L2 2592 3216 -97 1342 138 0 4 chr3 161080049 161080275 -56956883 + LTR26E LTR ERV1 1 296 -326 23 0 0 0 chr3 161080493 161080516 -56956642 + AT_rich Low_complexity Low_complexity 1 23 0 1854 140 25 53 chr3 161080520 161080841 -56956317 + AluSx SINE Alu 1 312 0 200 308 90 0 chr3 161080998 161081076 -56956082 + MIR SINE MIR 91 175 -87 1571 174 29 48 chr3 161081442 161081752 -56955406 + AluJb SINE Alu 3 306 -6 519 165 12 0 chr3 161081807 161081892 -56955266 - MER49 LTR ERV1 -50 873 788 250 228 18 0 chr3 161081998 161082055 -56955103 - MER5B DNA MER1_type -120 58 1 550 224 97 24 chr3 161082267 161082432 -56954726 + MER5B DNA MER1_type 2 178 0 617 228 86 25 chr3 161082478 161082625 -56954533 + MER5B DNA MER1_type 4 163 -15 1010 209 11 0 chr3 161082625 161082812 -56954346 - MER5A DNA MER1_type 0 189 1 617 228 86 25 chr3 161082812 161082826 -56954332 + MER5B DNA MER1_type 163 175 -3 4336 202 37 27 chr3 161083224 161084244 -56952914 + L1MB2 LINE L1 4219 5256 -927 1376 202 116 12 chr3 161084244 161084581 -56952577 - MLT1A2 LTR MaLR 0 374 3 4336 202 37 27 chr3 161084581 161085152 -56952006 + L1MB2 LINE L1 5256 5820 -363 719 184 14 128 chr3 161085152 161085370 -56951788 + MLT2D LTR ERVL 218 410 -4 1586 171 48 3 chr3 161085372 161085681 -56951477 + L1MB2 LINE L1 5845 6167 -4 202 347 173 7 chr3 161086122 161086272 -56950886 + L3b LINE CR1 1184 1358 -225 1725 254 127 10 chr3 161086408 161086897 -56950261 - MLT1E1 LTR MaLR -106 548 3 387 0 0 0 chr3 161089533 161089576 -56947582 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr3 161090043 161090065 -56947093 + AT_rich Low_complexity Low_complexity 1 22 0 245 241 65 28 chr3 161091170 161091278 -56945880 + L1ME LINE L1 5717 5828 -334 2528 37 7 0 chr3 161091308 161091603 -56945555 + AluY SINE Alu 1 297 -14 253 336 45 18 chr3 161092006 161092116 -56945042 - MLT2E LTR ERVL -472 156 44 21 82 0 0 chr3 161093050 161093099 -56944059 + AT_rich Low_complexity Low_complexity 1 49 0 1774 147 51 3 chr3 161094457 161094750 -56942408 - AluSq SINE Alu -6 307 1 1114 243 143 6 chr3 161095096 161095425 -56941733 - MLT1A2 LTR MaLR 0 374 1 2088 125 3 0 chr3 161096026 161096321 -56940837 - AluSx SINE Alu -16 296 1 746 261 160 37 chr3 161097030 161097405 -56939753 - MLT1H LTR MaLR -11 538 118 432 192 0 0 chr3 161097418 161097517 -56939641 + (TA)n Simple_repeat Simple_repeat 1 99 0 324 0 0 0 chr3 161097527 161097565 -56939593 - MER57B LTR ERV1 -71 363 326 250 210 97 0 chr3 161098104 161098166 -56938992 - MLT1J LTR MaLR 0 511 444 1909 108 0 36 chr3 161098257 161098535 -56938623 + AluSx SINE Alu 1 268 -44 21 0 0 0 chr3 161098537 161098558 -56938600 + AT_rich Low_complexity Low_complexity 1 21 0 2306 118 0 0 chr3 161099330 161099636 -56937522 - AluSx SINE Alu -6 306 1 27 49 0 0 chr3 161099881 161099922 -56937236 + AT_rich Low_complexity Low_complexity 1 41 0 622 133 56 67 chr3 161099976 161100128 -56937030 - L1MA7 LINE L1 0 6291 6140 585 193 141 22 chr3 161100128 161100263 -56936895 - FRAM SINE Alu -15 151 1 622 133 56 67 chr3 161100263 161100290 -56936868 - L1MA7 LINE L1 -151 6140 6114 331 279 125 29 chr3 161100320 161100456 -56936702 + MLT1K LTR MaLR 377 525 -63 1198 279 11 7 chr3 161100637 161100913 -56936245 + MLT2E LTR ERVL 36 312 -316 1884 135 67 94 chr3 161100949 161101365 -56935793 + MER39 LTR ERV1 303 707 0 612 317 42 23 chr3 161101365 161101665 -56935493 + MLT2E LTR ERVL 321 626 -2 318 26 0 0 chr3 161102276 161102315 -56934843 + (CA)n Simple_repeat Simple_repeat 2 40 0 288 173 39 8 chr3 161103690 161103817 -56933341 + (TA)n Simple_repeat Simple_repeat 2 132 0 23 0 0 0 chr3 161104312 161104335 -56932823 + AT_rich Low_complexity Low_complexity 1 23 0 27 73 0 0 chr3 161104763 161104818 -56932340 + AT_rich Low_complexity Low_complexity 1 55 0 1272 197 20 27 chr3 161104841 161105174 -56931984 - AluJo SINE Alu 0 331 1 1665 168 3 3 chr3 161105309 161105601 -56931557 + AluJb SINE Alu 10 301 -11 32 0 0 0 chr3 161106217 161106249 -56930909 + AT_rich Low_complexity Low_complexity 1 32 0 417 20 0 0 chr3 161106612 161106662 -56930496 + (CA)n Simple_repeat Simple_repeat 2 51 0 25 0 0 0 chr3 161106787 161106812 -56930346 + AT_rich Low_complexity Low_complexity 1 25 0 1325 190 27 126 chr3 161108941 161109346 -56927812 + MLT1A1 LTR MaLR 1 365 0 249 382 52 21 chr3 161109929 161110120 -56927038 - L2 LINE L2 -406 2908 2712 * 342 263 0 113 chr3 161110114 161110247 -56926911 - MIR SINE MIR -137 125 8 340 316 36 18 chr3 161111250 161111418 -56925740 - L1ME4a LINE L1 -235 5886 5716 2745 13 0 0 chr3 161111605 161111911 -56925247 - AluYb8 SINE Alu -12 306 1 405 380 44 8 chr3 161111911 161112161 -56924997 + L2 LINE L2 2812 3070 -202 534 113 0 0 chr3 161112161 161112241 -56924917 + MADE1 DNA Mariner 1 80 0 6091 149 13 18 chr3 161112269 161113850 -56923308 + L1MA3 LINE L1 4639 6301 -4 227 299 65 0 chr3 161113960 161114037 -56923121 + L2 LINE L2 3178 3259 -13 217 238 0 0 chr3 161114049 161114091 -56923067 - L2 LINE L2 -15 3298 3257 423 271 23 56 chr3 161114114 161114299 -56922859 - L1ME4a LINE L1 -458 5663 5485 368 247 0 0 chr3 161115244 161115321 -56921837 + MER94 DNA DNA 55 131 -3 676 260 85 70 chr3 161115709 161115843 -56921315 + L2 LINE L2 2201 2331 -983 1420 220 27 24 chr3 161115843 161116216 -56920942 - MLT1A2 LTR MaLR 0 374 1 676 260 85 70 chr3 161116216 161116335 -56920823 + L2 LINE L2 2331 2463 -851 1711 136 42 42 chr3 161116335 161116525 -56920633 - AluJb SINE Alu -4 308 116 225 0 0 0 chr3 161116525 161116550 -56920608 + (TG)n Simple_repeat Simple_repeat 2 26 0 1711 136 42 42 chr3 161116550 161116667 -56920491 - AluJb SINE Alu -195 117 1 676 260 85 70 chr3 161116667 161116743 -56920415 + L2 LINE L2 2463 2536 -778 196 250 0 54 chr3 161116752 161116808 -56920350 + L2 LINE L2 2791 2843 -471 678 312 75 10 chr3 161116995 161117303 -56919855 - HAL1b LINE L1 -774 574 247 227 204 19 19 chr3 161117725 161117779 -56919379 + CT-rich Low_complexity Low_complexity 5 58 0 1672 114 0 43 chr3 161118829 161119083 -56918075 + AluSq SINE Alu 1 243 -70 361 280 97 23 chr3 161119434 161119609 -56917549 + MIR SINE MIR 75 262 0 321 331 152 43 chr3 161121099 161121422 -56915736 - L2 LINE L2 -7 3306 2937 1757 201 34 14 chr3 161121422 161121780 -56915378 + MLT1A1 LTR MaLR 1 365 0 321 331 152 43 chr3 161121780 161121825 -56915333 - L2 LINE L2 -376 2937 2898 292 277 0 0 chr3 161122966 161123031 -56914127 - L2 LINE L2 -5 3308 3244 189 154 0 0 chr3 161123130 161123169 -56913989 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 301 224 13 0 chr3 161123276 161123352 -56913806 + MER116 DNA Mariner 1 77 -3 240 288 110 62 chr3 161123698 161123844 -56913314 + MIR SINE MIR 34 186 -76 23 33 0 0 chr3 161126335 161126365 -56910793 + AT_rich Low_complexity Low_complexity 1 30 0 4686 187 51 17 chr3 161126571 161128291 -56908867 - L1MA5 LINE L1 0 6300 4518 3007 243 35 14 chr3 161128318 161128731 -56908427 + L1 LINE L1 2696 3099 -3047 1804 126 14 11 chr3 161128731 161129050 -56908108 + AluSg SINE Alu 1 320 0 3007 243 35 14 chr3 161129050 161129472 -56907686 + L1 LINE L1 3099 3549 -2597 828 200 13 81 chr3 161129685 161129920 -56907238 + MER20 DNA MER1_type 1 219 0 21 36 0 0 chr3 161130912 161130940 -56906218 + AT_rich Low_complexity Low_complexity 1 28 0 2186 153 8 16 chr3 161132551 161132930 -56904228 + L1PA15 LINE L1 5789 6164 -1 228 309 80 51 chr3 161133308 161133483 -56903675 - LTR67 LTR ERVL -12 545 366 2219 103 0 3 chr3 161134043 161134345 -56902813 - AluSq SINE Alu -10 303 3 33 43 0 0 chr3 161134728 161134775 -56902383 + AT_rich Low_complexity Low_complexity 1 47 0 23 0 0 0 chr3 161135355 161135378 -56901780 + AT_rich Low_complexity Low_complexity 1 23 0 185 108 27 0 chr3 161136054 161136091 -56901067 + (CAGAGA)n Simple_repeat Simple_repeat 4 41 0 1396 211 66 33 chr3 161136126 161136512 -56900646 - MER39 LTR ERV1 0 707 175 229 236 0 132 chr3 161136494 161136600 -56900558 - MER39 LTR ERV1 -430 277 186 * 260 333 87 28 chr3 161137142 161137453 -56899705 - L2 LINE L2 -286 2986 2596 24 0 0 0 chr3 161138874 161138898 -56898260 + AT_rich Low_complexity Low_complexity 1 24 0 297 51 0 0 chr3 161139025 161139064 -56898094 + (CA)n Simple_repeat Simple_repeat 2 40 0 422 340 95 33 chr3 161139533 161140142 -56897016 - L1M4 LINE L1 -1042 5104 4458 21 0 0 0 chr3 161140627 161140648 -56896510 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr3 161140915 161140947 -56896211 + AT_rich Low_complexity Low_complexity 1 32 0 1321 144 173 35 chr3 161140953 161141266 -56895892 - THE1C LTR MaLR 0 375 20 388 132 0 0 chr3 161141306 161141374 -56895784 - L1MA7 LINE L1 -16 6275 6208 1966 134 10 0 chr3 161141760 161142058 -56895100 - AluSx SINE Alu -11 301 1 180 77 0 0 chr3 161142958 161142984 -56894174 + (TTAAA)n Simple_repeat Simple_repeat 4 29 0 1368 247 97 70 chr3 161143702 161143853 -56893305 - Zaphod DNA AcHobo -3 4028 3883 1947 145 0 7 chr3 161143853 161144149 -56893009 + AluJb SINE Alu 9 302 -10 1368 247 97 70 chr3 161144149 161144480 -56892678 - Zaphod DNA AcHobo -148 3883 3563 1924 145 3 20 chr3 161144480 161144784 -56892374 - AluSx SINE Alu -13 299 1 1368 247 97 70 chr3 161144784 161145174 -56891984 - Zaphod DNA AcHobo -468 3563 3131 * 2296 266 66 24 chr3 161145169 161145865 -56891293 - Zaphod DNA AcHobo -3293 738 14 2066 116 3 3 chr3 161146211 161146518 -56890640 - AluSx SINE Alu 0 307 1 21 0 0 0 chr3 161146797 161146818 -56890340 + AT_rich Low_complexity Low_complexity 1 21 0 3332 275 89 45 chr3 161147812 161148293 -56888865 + L2 LINE L2 1564 2023 -1290 2361 84 0 0 chr3 161148293 161148591 -56888567 - AluSg SINE Alu -12 298 1 3332 275 89 45 chr3 161148591 161148912 -56888246 + L2 LINE L2 2023 2329 -984 519 274 0 0 chr3 161148912 161149025 -56888133 + MER81 DNA DNA 2 114 0 3332 275 89 45 chr3 161149025 161149896 -56887262 + L2 LINE L2 2329 3312 -1 485 143 0 11 chr3 161150961 161151052 -56886106 + (TTCC)n Simple_repeat Simple_repeat 2 91 0 516 229 0 0 chr3 161151057 161151166 -56885992 - FLAM_C SINE Alu -34 109 1 2051 68 0 60 chr3 161151428 161151724 -56885434 + AluY SINE Alu 2 280 -31 271 0 0 0 chr3 161151724 161151754 -56885404 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 1381 123 9 32 chr3 161151892 161152111 -56885047 + AluSg/x SINE Alu 83 296 -14 21 57 0 0 chr3 161152305 161152340 -56884818 + AT_rich Low_complexity Low_complexity 1 35 0 295 314 59 39 chr3 161152519 161152723 -56884435 + HAL1b LINE L1 399 1692 -808 774 293 68 20 chr3 161153329 161153871 -56883287 + L1M4 LINE L1 2175 2742 -3404 268 374 43 0 chr3 161154200 161154411 -56882747 - L2 LINE L2 -711 2603 2384 1175 165 75 125 chr3 161154702 161155023 -56882135 - AluJb SINE Alu -2 310 6 351 282 0 0 chr3 161155028 161155131 -56882027 + L1ME4a LINE L1 5628 5730 -391 1398 78 5 0 chr3 161155488 161155679 -56881479 + L1PA8 LINE L1 5978 6169 -3 398 265 76 0 chr3 161155908 161156040 -56881118 + L1ME4a LINE L1 5968 6109 -12 489 176 0 0 chr3 161156255 161156363 -56880795 + (TA)n Simple_repeat Simple_repeat 2 109 0 239 169 28 0 chr3 161156376 161156447 -56880711 - L1MCa LINE L1 -4362 2064 1992 1897 125 0 14 chr3 161156452 161156741 -56880417 - AluSx SINE Alu -27 285 1 726 326 78 63 chr3 161157042 161157977 -56879181 + HAL1b LINE L1 1 823 -525 358 256 59 88 chr3 161158145 161158383 -56878775 + L1MC4a LINE L1 6476 6706 -1102 393 22 0 0 chr3 161158452 161158475 -56878683 + (TCCCC)n Simple_repeat Simple_repeat 1 69 0 393 22 0 0 chr3 161158475 161158521 -56878637 + (TCCCC)n Simple_repeat Simple_repeat 5 50 0 22 56 0 0 chr3 161158815 161158851 -56878307 + AT_rich Low_complexity Low_complexity 1 36 0 5517 173 22 12 chr3 161159000 161160740 -56876418 - L1PA16 LINE L1 -17 7587 5832 2892 244 26 21 chr3 161160710 161161795 -56875363 - L1PA16 LINE L1 -4281 3303 2203 * 642 349 15 18 chr3 161162340 161162733 -56874425 - L1PA16 LINE L1 -7166 415 24 887 243 118 59 chr3 161162908 161163246 -56873912 - MLT1A1 LTR MaLR -2 363 6 1523 87 0 0 chr3 161163648 161163856 -56873302 - L1P4 LINE L1 -368 5800 5593 1240 184 17 117 chr3 161163971 161164374 -56872784 + MLT1A1 LTR MaLR 3 365 0 1464 195 104 30 chr3 161164806 161165144 -56872014 - MLT1A1 LTR MaLR 0 365 3 602 282 138 29 chr3 161165299 161165647 -56871511 - MLT1J LTR MaLR -3 508 123 1554 212 3 31 chr3 161165901 161166222 -56870936 - AluJb SINE Alu 0 312 1 293 253 13 0 chr3 161166368 161166447 -56870711 + (TA)n Simple_repeat Simple_repeat 2 81 0 344 284 7 28 chr3 161166997 161167138 -56870020 + (TATATG)n Simple_repeat Simple_repeat 4 141 0 693 284 9 26 chr3 161168102 161168334 -56868824 - MLT1K LTR MaLR -9 579 352 1452 199 14 0 chr3 161168365 161168642 -56868516 + AluJo SINE Alu 13 293 -19 1839 210 125 0 chr3 161169049 161169496 -56867662 + MLT1D LTR MaLR 3 505 0 273 180 33 0 chr3 161169555 161169616 -56867542 + MER53 DNA DNA 125 187 -2 513 283 6 29 chr3 161169924 161170097 -56867061 + MIR SINE MIR 94 262 0 246 315 56 0 chr3 161171140 161171229 -56865929 - MIR3 SINE MIR -17 191 98 28 29 0 0 chr3 161174721 161174756 -56862402 + AT_rich Low_complexity Low_complexity 1 35 0 2861 10 0 0 chr3 161175631 161175942 -56861216 + AluYa5 SINE Alu 1 311 0 280 385 73 43 chr3 161176325 161176392 -56860766 + L2 LINE L2 2602 2665 -649 1104 237 5 9 chr3 161176392 161176616 -56860542 - MER58A DNA MER1_type -1 223 1 280 385 73 43 chr3 161176616 161176875 -56860283 + L2 LINE L2 2665 2938 -376 323 301 52 44 chr3 161176933 161177069 -56860089 + L2 LINE L2 3168 3304 -9 180 326 31 62 chr3 161177066 161177195 -56859963 + L3 LINE CR1 1373 1497 -80 * 3400 273 98 78 chr3 161177475 161179038 -56858120 + L1ME1 LINE L1 39 1569 -4646 1389 163 63 9 chr3 161179038 161179357 -56857801 + L1MB4 LINE L1 5844 6179 -1 3400 273 98 78 chr3 161179357 161179584 -56857574 + L1ME1 LINE L1 1569 1790 -4425 1046 172 191 43 chr3 161179584 161179706 -56857452 + AluJo SINE Alu 1 104 -198 201 39 0 0 chr3 161179706 161179732 -56857426 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1046 172 191 43 chr3 161179732 161179865 -56857293 + AluJo SINE Alu 104 294 -8 3400 273 98 78 chr3 161179865 161179977 -56857181 + L1ME1 LINE L1 1790 1898 -4317 1887 151 7 0 chr3 161179977 161180268 -56856890 + AluJb SINE Alu 1 293 -19 3400 273 98 78 chr3 161180268 161182308 -56854850 + L1ME1 LINE L1 1898 4048 -2167 2251 195 35 2 chr3 161182314 161182719 -56854439 - MSTB LTR MaLR -5 421 4 8549 193 18 10 chr3 161182722 161184360 -56852798 - MSTB-int LTR MaLR 0 1651 1 1884 197 39 53 chr3 161184360 161184792 -56852366 - MSTB LTR MaLR 0 426 1 1812 336 105 24 chr3 161184792 161185227 -56851931 + L1ME1 LINE L1 4045 4443 -1772 2449 71 0 0 chr3 161185227 161185521 -56851637 + AluY SINE Alu 3 296 -15 1812 336 105 24 chr3 161185521 161186087 -56851071 + L1ME1 LINE L1 4443 5127 -1088 1215 144 87 94 chr3 161186089 161186243 -56850915 - MER46B DNA MER2_type -2495 236 208 1098 199 188 35 chr3 161186243 161186499 -56850659 - AluJo SINE Alu -7 295 1 1215 144 87 94 chr3 161186499 161186642 -56850516 - MER46B DNA MER2_type -2523 208 66 1019 281 13 16 chr3 161186665 161186978 -56850180 + L1ME1 LINE L1 5518 5829 -406 692 224 0 0 chr3 161187008 161187133 -56850025 + FRAM SINE Alu 33 157 -19 489 214 98 8 chr3 161187143 161187267 -56849891 + L1ME1 LINE L1 5804 5935 -300 2242 156 16 19 chr3 161187292 161187554 -56849604 + MER83B LTR ERV1 1 263 -115 2107 119 49 32 chr3 161187554 161187923 -56849235 - THE1C LTR MaLR 0 375 1 2242 156 16 19 chr3 161187923 161188039 -56849119 + MER83B LTR ERV1 263 378 0 2937 226 69 39 chr3 161188054 161188807 -56848351 + MER83B-int LTR ERV1 47 822 -4058 2558 157 19 7 chr3 161188806 161189234 -56847924 + MER83B-int LTR ERV1 1069 1501 -3379 * 9000 124 8 5 chr3 161189211 161190530 -56846628 + MER83B-int LTR ERV1 3547 4869 -11 1832 158 85 52 chr3 161190530 161190896 -56846262 + MER83B LTR ERV1 1 378 0 446 273 26 72 chr3 161190897 161191161 -56845997 + L1ME1 LINE L1 5981 6232 -3 187 200 0 44 chr3 161191169 161191214 -56845944 - L2 LINE L2 -78 3235 3193 1066 222 39 4 chr3 161191236 161191470 -56845688 - AluJo SINE Alu -43 269 28 21 36 0 0 chr3 161192356 161192384 -56844774 + AT_rich Low_complexity Low_complexity 1 28 0 433 282 38 0 chr3 161196075 161196206 -56840952 + MIR SINE MIR 49 184 -78 1485 126 71 4 chr3 161197791 161198045 -56839113 + L1PA14 LINE L1 5889 6159 -2 951 183 0 34 chr3 161198730 161198905 -56838253 - AluJb SINE Alu -3 309 141 802 211 12 12 chr3 161199116 161199277 -56837881 - AluJb SINE Alu -12 300 140 570 306 88 5 chr3 161199282 161199475 -56837683 - MIR SINE MIR -49 213 5 262 342 86 0 chr3 161200632 161200749 -56836409 - MLT1J LTR MaLR -193 318 192 1182 320 34 8 chr3 161201249 161201637 -56835521 + LTR16A LTR ERVL 52 449 -1 478 311 18 46 chr3 161201709 161202065 -56835093 - MER52A LTR ERV1 0 1755 1289 1259 201 310 34 chr3 161202323 161202765 -56834393 - MER52A LTR ERV1 -524 1231 668 26062 100 10 5 chr3 161202769 161206281 -56830877 - MER52A-int LTR ERV1 -6 7085 669 5158 196 28 45 chr3 161206271 161208145 -56829013 - MER52A-int LTR ERV1 -1029 2059 169 * 506 299 6 6 chr3 161208216 161208373 -56828785 - MER52A LTR ERV1 0 1755 1599 425 298 33 77 chr3 161208374 161208555 -56828603 - MER52A LTR ERV1 -276 1479 1307 901 208 51 99 chr3 161208889 161209340 -56827818 - MER52A LTR ERV1 -141 890 264 1866 160 0 0 chr3 161209342 161209624 -56827534 + AluJo SINE Alu 31 312 0 245 243 37 88 chr3 161210192 161210328 -56826830 + MLT2E LTR ERVL 500 628 0 395 224 0 41 chr3 161212894 161212992 -56824166 + MIR SINE MIR 59 152 -110 392 245 173 14 chr3 161213757 161213896 -56823262 - MIR SINE MIR -55 207 47 387 0 0 0 chr3 161213907 161213950 -56823208 + (TG)n Simple_repeat Simple_repeat 2 44 0 2320 47 13 34 chr3 161213950 161214248 -56822910 - AluY SINE Alu -19 292 1 183 156 0 0 chr3 161214468 161214500 -56822658 + CT-rich Low_complexity Low_complexity 4 35 0 1174 262 89 13 chr3 161214541 161214923 -56822235 - LTR16C LTR ERVL -10 481 71 34 42 0 0 chr3 161216114 161216162 -56820996 + AT_rich Low_complexity Low_complexity 1 48 0 303 216 68 0 chr3 161216431 161216505 -56820653 + MLT1J2 LTR MaLR 69 147 -303 1471 66 10 0 chr3 161266871 161267067 -56770091 - L1MA2 LINE L1 -320 5984 5787 1950 124 23 3 chr3 161268014 161268321 -56768837 + AluSq SINE Alu 1 313 0 194 324 15 0 chr3 161268859 161268927 -56768231 - L3b LINE CR1 -219 1364 1296 364 317 50 0 chr3 161270179 161270280 -56766878 + L2 LINE L2 3199 3304 -9 1636 181 7 7 chr3 161270515 161270797 -56766361 + AluJo SINE Alu 1 282 -30 243 0 0 0 chr3 161270800 161270827 -56766331 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 681 264 41 114 chr3 161270898 161271326 -56765832 + MLT1G LTR MaLR 3 413 -147 727 271 22 27 chr3 161272022 161272122 -56765036 + MER58A DNA MER1_type 1 100 -2320 2050 96 0 0 chr3 161272122 161272393 -56764765 - AluSx SINE Alu -18 294 24 727 271 22 27 chr3 161272393 161272517 -56764641 + MER58A DNA MER1_type 100 224 0 361 362 101 14 chr3 161272670 161272946 -56764212 - L1M4 LINE L1 -3699 2447 2148 284 143 18 0 chr3 161273707 161273763 -56763395 + (TA)n Simple_repeat Simple_repeat 2 58 0 468 0 0 0 chr3 161273977 161274029 -56763129 + (CA)n Simple_repeat Simple_repeat 2 53 0 239 246 0 0 chr3 161274043 161274104 -56763054 - MLT1L LTR MaLR -4 611 551 618 214 151 0 chr3 161274113 161274272 -56762886 + MER5A DNA MER1_type 4 186 -3 302 301 163 30 chr3 161274818 161275021 -56762137 + L1MC/D LINE L1 4536 4765 -1381 617 269 0 7 chr3 161275033 161275182 -56761976 - MLT1A2 LTR MaLR 0 374 227 383 269 47 78 chr3 161275183 161275439 -56761719 + L1MC/D LINE L1 5363 5610 -2198 242 283 0 0 chr3 161275440 161275500 -56761658 + (CATA)n Simple_repeat Simple_repeat 2 61 0 542 278 31 31 chr3 161275500 161275727 -56761431 + L1MC/D LINE L1 5598 5824 -1984 348 336 52 16 chr3 161275738 161276052 -56761106 - L2 LINE L2 -5 3308 2930 1992 129 7 0 chr3 161277559 161277895 -56759263 + AluSq SINE Alu 1 624 -27 2018 81 0 7 chr3 161277895 161278179 -56758979 + L1MA1 LINE L1 6017 6298 -4 1992 129 7 0 chr3 161278179 161278208 -56758950 + AluSq SINE Alu 624 651 0 207 0 0 0 chr3 161278256 161278279 -56758879 + (T)n Simple_repeat Simple_repeat 1 23 0 264 30 0 0 chr3 161278593 161278626 -56758532 + (CA)n Simple_repeat Simple_repeat 2 34 0 26 30 0 0 chr3 161278774 161278807 -56758351 + AT_rich Low_complexity Low_complexity 1 33 0 33 25 0 0 chr3 161279926 161279966 -56757192 + AT_rich Low_complexity Low_complexity 1 40 0 23 33 0 0 chr3 161280144 161280174 -56756984 + AT_rich Low_complexity Low_complexity 1 30 0 1249 220 40 7 chr3 161280421 161280698 -56756460 - AluJb SINE Alu -23 289 4 31 44 0 0 chr3 161280801 161280846 -56756312 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr3 161281298 161281319 -56755839 + AT_rich Low_complexity Low_complexity 1 21 0 1580 203 4 0 chr3 161281382 161281653 -56755505 - AluJb SINE Alu -40 272 1 452 279 89 81 chr3 161281786 161282202 -56754956 + L1ME LINE L1 5269 5692 -429 5213 111 274 91 chr3 161282206 161283640 -56753518 - pTR5 LTR ERV1 0 2438 743 28 91 0 0 chr3 161284287 161284364 -56752794 + AT_rich Low_complexity Low_complexity 1 77 0 258 252 160 0 chr3 161284365 161284484 -56752674 - L1MC/D LINE L1 -2056 5752 5615 3142 201 123 7 chr3 161284496 161285206 -56751952 + L1MD2 LINE L1 5567 6358 -1 499 288 79 13 chr3 161285217 161285574 -56751584 - L1ME LINE L1 -486 5684 5282 2264 95 0 7 chr3 161285580 161285923 -56751235 - AluSx SINE Alu 0 312 1 525 279 97 59 chr3 161286110 161286533 -56750625 - L1ME LINE L1 -1157 4989 4551 2439 121 14 3 chr3 161286660 161287024 -56750134 + THE1C LTR MaLR 8 375 0 499 288 70 18 chr3 161287477 161287813 -56749345 - L1M4 LINE L1 -1592 4554 4201 656 301 8 52 chr3 161287982 161288126 -56749032 - MIR SINE MIR -1 261 131 2132 120 0 19 chr3 161288126 161288442 -56748716 + AluSx SINE Alu 1 310 -2 656 301 8 52 chr3 161288442 161288546 -56748612 - MIR SINE MIR -131 131 24 265 291 94 0 chr3 161288750 161288867 -56748291 + MLT1L LTR MaLR 483 610 -5 373 352 24 44 chr3 161288906 161289204 -56747954 - L2 LINE L2 -848 2466 2175 200 311 33 0 chr3 161289359 161289420 -56747738 + L2 LINE L2 2726 2788 -526 408 351 81 17 chr3 161289853 161290126 -56747032 - L2 LINE L2 -1414 1900 1599 2151 104 0 13 chr3 161290126 161290435 -56746723 + AluSc SINE Alu 1 305 -4 408 351 81 17 chr3 161290435 161290509 -56746649 - L2 LINE L2 -1715 1599 1531 1366 204 55 59 chr3 161294915 161295327 -56741831 - Tigger7 DNA MER2_type -246 2341 1 1848 160 3 0 chr3 161295707 161296000 -56741158 + AluSx SINE Alu 1 294 -18 205 51 51 0 chr3 161296006 161296045 -56741113 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 194 328 16 0 chr3 161296870 161296931 -56740227 + L2 LINE L2 3186 3247 -25 2296 105 0 0 chr3 161297441 161297737 -56739421 + AluSg SINE Alu 1 296 -14 450 225 57 119 chr3 161299151 161299283 -56737875 - LTR37A LTR ERV1 0 426 287 2818 3 0 0 chr3 161299283 161299590 -56737568 - AluYa5 SINE Alu -4 307 1 450 225 57 119 chr3 161299590 161299826 -56737332 - LTR37A LTR ERV1 -139 287 81 1719 175 3 3 chr3 161299925 161300222 -56736936 - AluJo SINE Alu -15 297 1 1047 225 48 122 chr3 161300234 161300975 -56736183 - MER31-int LTR ERV1 -712 5507 3569 267 352 0 11 chr3 161301555 161301646 -56735512 - MER5B DNA MER1_type -87 91 2 592 206 5 3 chr3 161301871 161302059 -56735099 - MER82 DNA MER2_type 0 653 409 370 179 253 11 chr3 161302064 161302159 -56734999 - MER20 DNA MER1_type -101 118 1 461 278 113 16 chr3 161302159 161302353 -56734805 + MIR SINE MIR 38 250 -12 21 36 0 0 chr3 161303366 161303394 -56733764 + AT_rich Low_complexity Low_complexity 1 28 0 230 259 65 83 chr3 161303601 161303709 -56733449 - L2 LINE L2 -7 3306 3201 1873 129 18 45 chr3 161303753 161304086 -56733072 + MER4A LTR ERV1 1 324 -340 505 180 187 40 chr3 161304157 161304307 -56732851 + MER4C LTR ERV1 294 465 0 257 352 70 27 chr3 161304487 161304788 -56732370 - L2 LINE L2 -341 2973 2660 1451 237 99 9 chr3 161304791 161305217 -56731941 + MLT2B2 LTR ERVL 1 464 -51 224 232 10 0 chr3 161305219 161305318 -56731840 + (TA)n Simple_repeat Simple_repeat 1 100 0 748 340 185 22 chr3 161305337 161306184 -56730974 - L2 LINE L2 -639 2675 1683 4545 66 0 0 chr3 161306184 161306759 -56730399 + L1PA7 LINE L1 5572 6146 -8 748 340 185 22 chr3 161306759 161306774 -56730384 - L2 LINE L2 -1631 1683 1672 492 226 24 30 chr3 161306955 161307123 -56730035 + MER69 DNA AcHobo 2359 2525 -1 232 149 15 15 chr3 161308115 161308182 -56728976 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 180 381 48 0 chr3 161308302 161308365 -56728793 + L2 LINE L2 3229 3294 -19 2328 97 0 0 chr3 161308381 161308679 -56728479 - AluSc SINE Alu -11 298 1 318 214 113 77 chr3 161308977 161309145 -56728013 - MLT1K LTR MaLR 0 588 415 21 107 0 0 chr3 161310321 161310405 -56726753 + AT_rich Low_complexity Low_complexity 1 84 0 228 356 7 52 chr3 161310796 161310931 -56726227 - L2 LINE L2 -25 3288 3160 502 286 74 52 chr3 161311742 161311973 -56725185 + L2 LINE L2 3075 3310 -3 1159 234 60 0 chr3 161312618 161312883 -56724275 - L1MD3 LINE L1 -1001 6994 6714 240 288 120 23 chr3 161312911 161313210 -56723948 - L1MEc LINE L1 -4094 2216 1889 449 269 119 61 chr3 161313528 161313909 -56723249 - L1MEc LINE L1 -4444 1685 1263 300 53 0 0 chr3 161313909 161313947 -56723211 + (TG)n Simple_repeat Simple_repeat 1 38 0 449 269 119 61 chr3 161313947 161314093 -56723065 - L1MEc LINE L1 -4866 1263 1127 189 0 0 0 chr3 161314097 161314118 -56723040 + (TC)n Simple_repeat Simple_repeat 2 22 0 482 312 45 53 chr3 161314130 161314508 -56722650 - L1MEc LINE L1 -5012 1107 733 351 0 0 0 chr3 161315205 161315244 -56721914 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr3 161315451 161315473 -56721685 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 161316898 161316920 -56720238 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr3 161316961 161316996 -56720162 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr3 161317182 161317204 -56719954 + AT_rich Low_complexity Low_complexity 1 22 0 278 49 0 24 chr3 161318632 161318673 -56718485 + (TA)n Simple_repeat Simple_repeat 1 40 0 23 0 0 0 chr3 161318975 161318998 -56718160 + AT_rich Low_complexity Low_complexity 1 23 0 468 45 134 0 chr3 161319044 161319111 -56718047 - MADE1 DNA Mariner 0 80 5 399 155 41 0 chr3 161319741 161319838 -56717320 + A-rich Low_complexity Low_complexity 4 104 0 27 29 0 0 chr3 161320443 161320477 -56716681 + AT_rich Low_complexity Low_complexity 1 34 0 242 232 0 0 chr3 161321270 161321326 -56715832 + L1MC5 LINE L1 7610 7665 -296 2198 225 50 18 chr3 161321431 161321928 -56715230 + MLT1F1 LTR MaLR 1 513 -54 436 193 35 23 chr3 161321935 161322106 -56715052 + CT-rich Low_complexity Low_complexity 4 176 0 35 54 0 0 chr3 161322215 161322271 -56714887 + AT_rich Low_complexity Low_complexity 1 56 0 1675 169 32 0 chr3 161323175 161323301 -56713857 + AluSx SINE Alu 1 121 -191 214 50 50 0 chr3 161323301 161323341 -56713817 + (CAAAA)n Simple_repeat Simple_repeat 5 46 0 1675 169 32 0 chr3 161323341 161323493 -56713665 + AluSx SINE Alu 121 288 -24 26 0 0 0 chr3 161323493 161323519 -56713639 + AT_rich Low_complexity Low_complexity 1 26 0 189 294 0 0 chr3 161323614 161323665 -56713493 - L2 LINE L2 -224 3048 2998 21 0 0 0 chr3 161325615 161325636 -56711522 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 161325818 161325839 -56711319 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 161326152 161326173 -56710985 + AT_rich Low_complexity Low_complexity 1 21 0 292 404 15 0 chr3 161326611 161326747 -56710411 + MIR3 SINE MIR 54 191 -17 2922 252 53 4 chr3 161327991 161328896 -56708262 + L1 LINE L1 3213 4161 -1985 11723 196 21 49 chr3 161328903 161330029 -56707129 + L1MA4A LINE L1 753 1909 -5096 1990 127 0 3 chr3 161330029 161330339 -56706819 + AluSg SINE Alu 1 309 0 11723 196 21 49 chr3 161330339 161333917 -56703241 + L1MA4A LINE L1 1909 5196 -1809 2011 139 3 0 chr3 161333917 161334205 -56702953 + AluSx SINE Alu 9 297 -15 11723 196 21 49 chr3 161334205 161335967 -56701191 + L1MA4A LINE L1 5196 7005 0 23 33 0 0 chr3 161335988 161336018 -56701140 + AT_rich Low_complexity Low_complexity 1 30 0 236 254 156 49 chr3 161336132 161336254 -56700904 + MIR SINE MIR 23 157 -105 2114 123 10 3 chr3 161336347 161336657 -56700501 - AluSx SINE Alu 0 312 1 391 21 0 0 chr3 161337407 161337454 -56699704 - MADE1 DNA Mariner -33 47 1 2068 189 41 7 chr3 161339101 161339513 -56697645 - MSTB LTR MaLR 0 426 1 1574 229 15 42 chr3 161339533 161340018 -56697140 + MLT1B LTR MaLR 1 467 0 210 167 0 0 chr3 161340983 161341019 -56696139 + A-rich Low_complexity Low_complexity 1 36 0 221 299 46 0 chr3 161341643 161341730 -56695428 - L2 LINE L2 -532 2782 2692 192 296 14 56 chr3 161342265 161342336 -56694822 + L3 LINE CR1 1509 1576 -1 213 163 23 0 chr3 161342663 161342706 -56694452 + (TA)n Simple_repeat Simple_repeat 1 44 0 201 74 0 0 chr3 161344012 161344039 -56693119 + (CA)n Simple_repeat Simple_repeat 2 28 0 23 54 0 0 chr3 161344182 161344219 -56692939 + AT_rich Low_complexity Low_complexity 1 37 0 393 228 0 94 chr3 161344256 161344383 -56692775 - MLT1I LTR MaLR 0 409 295 896 248 102 28 chr3 161344384 161344580 -56692578 - MLT1B LTR MaLR 0 390 210 192 40 0 0 chr3 161344580 161344605 -56692553 + (GA)n Simple_repeat Simple_repeat 2 26 0 896 248 102 28 chr3 161344605 161344771 -56692387 - MLT1B LTR MaLR -180 210 1 22 0 0 0 chr3 161345460 161345482 -56691676 + AT_rich Low_complexity Low_complexity 1 22 0 1543 79 5 0 chr3 161347121 161347335 -56689823 - L1PA8 LINE L1 0 6172 5958 956 282 97 21 chr3 161347503 161347936 -56689222 + Charlie7 DNA MER1_type 5 470 -2142 879 206 38 0 chr3 161347921 161348105 -56689053 + Charlie7 DNA MER1_type 2084 2274 -338 * 222 333 0 14 chr3 161349638 161349707 -56687451 + L2 LINE L2 3241 3308 -5 26 30 0 0 chr3 161350431 161350464 -56686694 + AT_rich Low_complexity Low_complexity 1 33 0 189 74 0 0 chr3 161350972 161350999 -56686159 + (GA)n Simple_repeat Simple_repeat 2 28 0 23 33 0 0 chr3 161352619 161352649 -56684509 + AT_rich Low_complexity Low_complexity 1 30 0 315 0 0 0 chr3 161354148 161354183 -56682975 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 1862 161 27 15 chr3 161355252 161355582 -56681576 - MER46B DNA MER2_type 0 236 28 552 311 115 4 chr3 161355708 161355943 -56681215 + MIR SINE MIR 2 262 0 31 58 0 0 chr3 161356242 161356294 -56680864 + AT_rich Low_complexity Low_complexity 1 52 0 1871 177 9 12 chr3 161356874 161357201 -56679957 - MER2 DNA MER2_type -19 326 1 1210 238 111 13 chr3 161357201 161357595 -56679563 - MLT1C LTR MaLR -32 435 3 289 288 0 0 chr3 161357598 161357664 -56679494 - L2 LINE L2 -28 3285 3220 1095 268 53 20 chr3 161358437 161358926 -56678232 - L1MEc LINE L1 -3570 2576 2110 4129 229 52 41 chr3 161358940 161360842 -56676316 - L1MD1 LINE L1 0 6636 4706 1959 70 4 0 chr3 161360842 161361098 -56676060 - L1PA3 LINE L1 -3 6152 5896 4129 229 52 41 chr3 161361098 161361241 -56675917 - L1MD1 LINE L1 -1930 4706 4566 234 0 0 0 chr3 161361247 161361273 -56675885 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1446 129 4 0 chr3 161361275 161361500 -56675658 - AluY SINE Alu -9 302 77 474 63 0 89 chr3 161361500 161361579 -56675579 + Alu SINE Alu 7 78 -232 4238 219 106 39 chr3 161361587 161364451 -56672707 - L1MD1 LINE L1 -2012 4528 1341 2115 224 90 43 chr3 161364522 161365311 -56671847 + LTR1B LTR ERV1 1 826 0 354 292 60 42 chr3 161365357 161365525 -56671633 - L1M4 LINE L1 -1844 4302 4132 546 138 32 81 chr3 161366091 161366214 -56670944 - L1MD1 LINE L1 0 6242 6126 257 302 113 9 chr3 161366279 161366385 -56670773 - L3 LINE CR1 -315 1262 1146 6088 197 37 30 chr3 161366974 161369235 -56667923 + L1MC1 LINE L1 4045 6333 0 24 0 0 0 chr3 161369647 161369671 -56667487 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr3 161371715 161371741 -56665417 + AT_rich Low_complexity Low_complexity 1 26 0 351 314 41 41 chr3 161372593 161372908 -56664250 + L1ME LINE L1 5492 5806 -315 23 33 0 0 chr3 161372942 161372972 -56664186 + AT_rich Low_complexity Low_complexity 1 30 0 635 289 89 58 chr3 161373132 161373685 -56663473 + L1MC4a LINE L1 5267 5836 -1972 2104 89 0 7 chr3 161373716 161374040 -56663118 - AluSc SINE Alu 0 323 2 33 66 0 0 chr3 161374475 161374536 -56662622 + AT_rich Low_complexity Low_complexity 1 61 0 2265 97 0 0 chr3 161374616 161374915 -56662243 - AluY SINE Alu -12 299 1 26 30 0 0 chr3 161375117 161375150 -56662008 + AT_rich Low_complexity Low_complexity 1 33 0 207 69 0 0 chr3 161375195 161375224 -56661934 + (TTTTA)n Simple_repeat Simple_repeat 3 31 0 24 0 0 0 chr3 161375371 161375395 -56661763 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr3 161376343 161376378 -56660780 + AT_rich Low_complexity Low_complexity 1 35 0 2519 56 0 0 chr3 161377135 161377441 -56659717 - AluY SINE Alu -5 306 1 246 381 41 10 chr3 161377566 161377760 -56659398 - MARNA DNA Mariner -371 215 16 407 227 36 27 chr3 161378001 161378111 -56659047 - MARNA DNA Mariner -172 414 304 23 33 0 0 chr3 161378312 161378342 -56658816 + AT_rich Low_complexity Low_complexity 1 30 0 675 343 109 18 chr3 161378948 161379514 -56657644 - L2 LINE L2 -829 2485 1868 450 329 64 27 chr3 161380211 161380430 -56656728 - MIR SINE MIR -16 246 20 198 0 0 0 chr3 161380980 161381002 -56656156 + (A)n Simple_repeat Simple_repeat 1 22 0 2244 125 3 0 chr3 161381393 161381704 -56655454 + AluSq SINE Alu 1 312 -1 26 50 0 0 chr3 161381705 161381745 -56655413 + AT_rich Low_complexity Low_complexity 1 40 0 949 217 19 38 chr3 161383982 161384249 -56652909 - MER63 DNA MER1_type 0 1061 800 237 280 13 27 chr3 161384390 161384465 -56652693 - L2 LINE L2 -1 3312 3239 467 225 171 0 chr3 161384597 161384726 -56652432 - MER63 DNA MER1_type -231 829 679 214 298 0 0 chr3 161384784 161384841 -56652317 - MIR SINE MIR -66 142 86 25 51 0 0 chr3 161385499 161385538 -56651620 + AT_rich Low_complexity Low_complexity 1 39 0 40 73 0 0 chr3 161387135 161387217 -56649941 + AT_rich Low_complexity Low_complexity 1 82 0 340 342 25 8 chr3 161388313 161388433 -56648725 - MIR3 SINE MIR -18 190 69 330 87 0 0 chr3 161388603 161388649 -56648509 + (TG)n Simple_repeat Simple_repeat 1 46 0 363 96 0 0 chr3 161394825 161394877 -56642281 + (CA)n Simple_repeat Simple_repeat 2 53 0 203 184 26 26 chr3 161395346 161395422 -56641736 + (TA)n Simple_repeat Simple_repeat 2 77 0 21 0 0 0 chr3 161395798 161395819 -56641339 + AT_rich Low_complexity Low_complexity 1 21 0 560 88 0 0 chr3 161395981 161396061 -56641097 + MADE1 DNA Mariner 1 80 0 25 0 0 0 chr3 161396191 161396216 -56640942 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr3 161398241 161398263 -56638895 + AT_rich Low_complexity Low_complexity 1 22 0 432 82 0 0 chr3 161398477 161398538 -56638620 + (CA)n Simple_repeat Simple_repeat 1 61 0 198 324 29 19 chr3 161401744 161401849 -56635309 + MIR SINE MIR 49 154 -108 472 222 0 10 chr3 161401979 161402078 -56635080 + MIR SINE MIR 75 172 -90 393 253 62 27 chr3 161402649 161402795 -56634363 + Charlie8 DNA MER1_type 36 186 -2231 26 30 0 0 chr3 161403524 161403557 -56633601 + AT_rich Low_complexity Low_complexity 1 33 0 22 56 0 0 chr3 161404179 161404215 -56632943 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr3 161404377 161404397 -56632761 + (T)n Simple_repeat Simple_repeat 1 20 0 234 313 62 35 chr3 161404834 161404978 -56632180 - L3 LINE CR1 -7 1570 1423 302 347 120 71 chr3 161405671 161406095 -56631063 - L2 LINE L2 -2 3270 2826 377 271 77 71 chr3 161406386 161406562 -56630596 + L1ME4a LINE L1 5754 5928 -193 2304 98 0 16 chr3 161406562 161406877 -56630281 - AluSx SINE Alu -2 310 1 377 271 77 71 chr3 161406877 161407065 -56630093 + L1ME4a LINE L1 5928 6120 -1 266 172 0 0 chr3 161407722 161407780 -56629378 + L1MC4 LINE L1 6646 6703 -1339 189 0 0 0 chr3 161408497 161408518 -56628640 + (TTG)n Simple_repeat Simple_repeat 1 21 0 258 171 61 0 chr3 161408777 161408859 -56628299 + (TA)n Simple_repeat Simple_repeat 2 88 0 358 360 7 7 chr3 161410474 161410610 -56626548 + MIR3 SINE MIR 62 197 -11 194 61 0 30 chr3 161411198 161411231 -56625927 + (TAAAAA)n Simple_repeat Simple_repeat 4 35 0 195 42 0 0 chr3 161411545 161411569 -56625589 + (T)n Simple_repeat Simple_repeat 1 24 0 360 338 59 7 chr3 161411829 161411965 -56625193 - MIR3 SINE MIR -35 173 31 272 300 94 18 chr3 161413117 161413287 -56623871 + L1MC/D LINE L1 4737 4919 -1227 248 154 15 31 chr3 161413991 161414056 -56623102 + (TATAA)n Simple_repeat Simple_repeat 1 64 0 309 294 22 11 chr3 161414056 161414148 -56623010 + MLT1F1-int LTR MaLR 1017 1109 -262 788 97 81 0 chr3 161414201 161414325 -56622833 - L1MA1 LINE L1 0 6302 6169 3962 144 7 60 chr3 161414352 161415096 -56622062 - Tigger3b DNA MER2_type -526 705 2 242 95 24 0 chr3 161416832 161416874 -56620284 + (TC)n Simple_repeat Simple_repeat 2 44 0 194 229 0 16 chr3 161418044 161418105 -56619053 + CT-rich Low_complexity Low_complexity 3 62 0 1769 217 162 4 chr3 161418150 161418638 -56618520 + MLT1F1 LTR MaLR 3 567 0 2272 78 0 3 chr3 161418754 161419049 -56618109 + AluSc SINE Alu 1 294 -15 2177 129 3 0 chr3 161419085 161419396 -56617762 - AluSx SINE Alu 0 312 1 475 315 99 24 chr3 161419431 161419773 -56617385 - L2 LINE L2 -188 3125 2770 26 50 0 0 chr3 161421790 161421830 -56615328 + AT_rich Low_complexity Low_complexity 1 40 0 1413 192 92 0 chr3 161423208 161423479 -56613679 - AluJb SINE Alu -16 296 1 180 303 144 8 chr3 161423497 161423629 -56613529 + L2 LINE L2 3114 3263 -50 653 115 19 19 chr3 161424852 161424956 -56612202 + FRAM SINE Alu 60 163 -13 547 321 0 7 chr3 161425169 161425309 -56611849 - L2 LINE L2 0 3272 3134 760 267 23 27 chr3 161425617 161425838 -56611320 + MER58A DNA MER1_type 4 223 -1 340 319 157 28 chr3 161426124 161426572 -56610586 + L1MC/D LINE L1 5263 5760 -554 47 19 0 0 chr3 161426682 161426736 -56610422 + AT_rich Low_complexity Low_complexity 1 54 0 8711 50 7 0 chr3 161426911 161427975 -56609183 + MER11C LTR ERVK 1 1071 0 713 313 138 32 chr3 161428075 161428669 -56608489 - L2 LINE L2 -726 2588 1932 569 200 44 0 chr3 161428796 161429046 -56608112 + L1MA7 LINE L1 5925 6291 0 388 352 103 26 chr3 161429524 161429797 -56607361 - L2 LINE L2 -2791 523 230 221 311 136 0 chr3 161430051 161430154 -56607004 - MIR SINE MIR -55 207 91 742 269 103 26 chr3 161430872 161431190 -56605968 + L1P3 LINE L1 5456 5798 -356 3880 237 54 57 chr3 161431230 161433808 -56603350 + L1M2c LINE L1 2047 4460 -3105 * 4564 152 37 165 chr3 161433807 161434865 -56602293 + L1M2c LINE L1 4960 5765 -1800 1531 97 28 24 chr3 161434865 161435113 -56602045 - L1MA1 LINE L1 -7 6295 6047 4564 152 37 165 chr3 161435113 161435578 -56601580 + L1M2c LINE L1 5765 6288 -1277 716 273 94 26 chr3 161435588 161436046 -56601112 + HAL1 LINE L1 1039 1527 -980 276 30 0 0 chr3 161436098 161436131 -56601027 + (ATG)n Simple_repeat Simple_repeat 3 35 0 740 263 114 29 chr3 161436193 161436604 -56600554 + HAL1 LINE L1 1721 2166 -341 334 279 24 114 chr3 161436753 161437007 -56600151 + HAL1 LINE L1 2263 2493 -14 22 0 0 0 chr3 161437448 161437470 -56599688 + AT_rich Low_complexity Low_complexity 1 22 0 402 376 11 11 chr3 161437541 161437730 -56599428 + MIR SINE MIR 2 190 -72 31 82 0 0 chr3 161438247 161438320 -56598838 + AT_rich Low_complexity Low_complexity 1 73 0 2620 178 50 61 chr3 161438369 161438975 -56598183 - MER7C DNA MER2_type 0 602 4 230 258 0 0 chr3 161439076 161439138 -56598020 + (TA)n Simple_repeat Simple_repeat 2 63 0 1871 157 10 3 chr3 161439410 161439715 -56597443 + AluJb SINE Alu 1 307 -5 22 0 0 0 chr3 161439715 161439737 -56597421 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 161440078 161440101 -56597057 + AT_rich Low_complexity Low_complexity 1 23 0 548 296 116 28 chr3 161440169 161440557 -56596601 + L1ME LINE L1 5311 5732 -389 221 0 0 33 chr3 161440812 161440842 -56596316 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 2161 87 29 26 chr3 161441067 161441378 -56595780 - AluSx SINE Alu 0 312 1 1250 241 81 7 chr3 161443204 161443499 -56593659 + MLT1D LTR MaLR 1 317 -188 1958 170 43 29 chr3 161443504 161444058 -56593100 + MLT2A2 LTR ERVL 1 554 0 39021 106 19 7 chr3 161444058 161448512 -56588646 + HERVL-A2-A2 LTR ERVL 1 4538 -1116 2190 122 0 0 chr3 161448512 161448823 -56588335 + AluY SINE Alu 1 311 0 39021 106 19 7 chr3 161448823 161449954 -56587204 + HERVL-A2-A2 LTR ERVL 4538 5654 0 1979 158 60 31 chr3 161449954 161450499 -56586659 + MLT2A2 LTR ERVL 1 554 0 805 224 28 6 chr3 161450502 161450681 -56586477 + MLT1D LTR MaLR 321 503 -2 1002 276 40 28 chr3 161450729 161451055 -56586103 - L2 LINE L2 -583 2731 2402 40 67 0 0 chr3 161453369 161453444 -56583714 + AT_rich Low_complexity Low_complexity 1 75 0 227 254 0 34 chr3 161453771 161453830 -56583328 + T-rich Low_complexity Low_complexity 4 60 0 418 318 30 47 chr3 161453874 161454170 -56582988 - L1ME LINE L1 -529 5641 5351 241 260 0 14 chr3 161454984 161455057 -56582101 - MIR SINE MIR -25 237 166 617 287 81 104 chr3 161456502 161457301 -56579857 - L2 LINE L2 -1 3312 2545 1290 134 27 18 chr3 161457301 161457525 -56579633 + L1PA10 LINE L1 5940 6165 -3 617 287 81 104 chr3 161457525 161457768 -56579390 - L2 LINE L2 -768 2545 2298 25 31 0 0 chr3 161457882 161457914 -56579244 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr3 161458271 161458295 -56578863 + AT_rich Low_complexity Low_complexity 1 24 0 283 365 25 68 chr3 161458378 161458699 -56578459 + L2 LINE L2 2608 2914 -400 253 308 108 25 chr3 161458763 161458883 -56578275 - L2 LINE L2 0 3313 3184 21 57 0 0 chr3 161458901 161458936 -56578222 + AT_rich Low_complexity Low_complexity 1 35 0 674 317 93 52 chr3 161458936 161459447 -56577711 - L2 LINE L2 -15 3298 2768 1584 297 148 24 chr3 161459474 161460217 -56576941 - L2 LINE L2 -525 2789 1955 1024 239 133 17 chr3 161460745 161461159 -56575999 - L1ME3A LINE L1 -80 6090 5629 1379 267 62 32 chr3 161461162 161461965 -56575193 - L1ME3A LINE L1 -623 5539 4696 270 0 0 0 chr3 161461965 161461995 -56575163 + (TG)n Simple_repeat Simple_repeat 1 30 0 1379 267 62 32 chr3 161461995 161462112 -56575046 - L1ME3A LINE L1 -1466 4696 4584 774 241 53 43 chr3 161462174 161462361 -56574797 - MER5A DNA MER1_type 0 189 1 24 32 0 0 chr3 161462821 161462852 -56574306 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr3 161462931 161462954 -56574204 + AT_rich Low_complexity Low_complexity 1 23 0 267 306 121 8 chr3 161463396 161463520 -56573638 - MIR3 SINE MIR -38 170 33 3972 233 99 47 chr3 161466033 161467017 -56570141 + Zaphod DNA AcHobo 2369 3467 -564 1722 225 14 11 chr3 161467017 161467381 -56569777 - MLT1A1 LTR MaLR 0 365 1 3972 233 99 47 chr3 161467381 161467964 -56569194 + Zaphod DNA AcHobo 3467 4018 -13 346 345 170 25 chr3 161468010 161468154 -56569004 + L2 LINE L2 2895 3017 -296 1053 170 63 19 chr3 161468154 161468360 -56568798 - MER20 DNA MER1_type -4 215 1 346 345 170 25 chr3 161468360 161468580 -56568578 + L2 LINE L2 3017 3312 -1 2249 113 0 0 chr3 161468904 161469204 -56567954 - AluSx SINE Alu -12 300 1 444 198 160 0 chr3 161470037 161470143 -56567015 + MLT1E1 LTR MaLR 532 654 0 310 246 281 6 chr3 161470597 161470765 -56566393 - MIR SINE MIR -33 229 17 420 341 76 5 chr3 161471296 161471519 -56565639 - MIR SINE MIR -21 241 3 869 205 77 38 chr3 161471667 161472032 -56565126 + MLT1C LTR MaLR 1 467 0 334 265 72 0 chr3 161472145 161472228 -56564930 - L1MC4 LINE L1 -1341 6701 6613 209 191 38 0 chr3 161472228 161472333 -56564825 + (TA)n Simple_repeat Simple_repeat 1 109 0 217 244 174 0 chr3 161472776 161472862 -56564296 + MIR SINE MIR 106 206 -56 959 161 88 0 chr3 161474148 161474340 -56562818 - MER3 DNA MER1_type 0 209 1 261 0 0 0 chr3 161474766 161474795 -56562363 + (CA)n Simple_repeat Simple_repeat 2 30 0 228 86 0 0 chr3 161475094 161475129 -56562029 + (TG)n Simple_repeat Simple_repeat 2 36 0 245 194 42 42 chr3 161477821 161477893 -56559265 + L1MC4 LINE L1 6627 6698 -1344 21 0 0 0 chr3 161477962 161477983 -56559175 + AT_rich Low_complexity Low_complexity 1 21 0 260 288 136 15 chr3 161478177 161478309 -56558849 + MIR3 SINE MIR 52 199 -9 274 312 56 8 chr3 161478456 161478581 -56558577 - MIR SINE MIR 0 262 132 2641 63 30 14 chr3 161479011 161479375 -56557783 - L1PA7 LINE L1 -8 6146 5777 330 266 94 16 chr3 161481081 161481209 -56555949 + MIR SINE MIR 49 186 -76 281 82 20 0 chr3 161482125 161482174 -56554984 + (CA)n Simple_repeat Simple_repeat 2 51 0 7160 55 2 0 chr3 161482594 161483887 -56553271 - L1PA5 LINE L1 -1 6153 4865 478 235 27 47 chr3 161484130 161484279 -56552879 - MIR SINE MIR -17 245 100 367 328 71 16 chr3 161485565 161485747 -56551411 - MIR SINE MIR -14 248 57 249 275 0 55 chr3 161485863 161485954 -56551204 + L2 LINE L2 3226 3311 -2 233 75 25 0 chr3 161486054 161486094 -56551064 + (TC)n Simple_repeat Simple_repeat 2 42 0 23 0 0 0 chr3 161487083 161487106 -56550052 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 161488773 161488796 -56548362 + AT_rich Low_complexity Low_complexity 1 23 0 429 259 0 0 chr3 161489171 161489252 -56547906 + MER81 DNA DNA 34 114 0 306 50 0 0 chr3 161490238 161490278 -56546880 + (CA)n Simple_repeat Simple_repeat 1 40 0 2150 121 0 7 chr3 161491317 161491624 -56545534 + AluSx SINE Alu 1 305 -7 497 226 1 0 chr3 161492021 161492130 -56545028 + L1MD2 LINE L1 5800 5912 -257 1658 158 59 25 chr3 161492173 161492495 -56544663 - MER50 LTR ERV1 -23 711 379 1496 128 16 24 chr3 161492473 161492723 -56544435 - MER50 LTR ERV1 -486 248 1 * 1259 232 75 55 chr3 161492723 161493163 -56543995 + L1MD2 LINE L1 5909 6357 -2 603 60 0 0 chr3 161494050 161494134 -56543024 + Alu SINE Alu 225 308 -1 322 182 76 0 chr3 161494589 161494655 -56542503 + MER57-int LTR ERV1 173 243 -7294 931 192 22 86 chr3 161494773 161495086 -56542072 + L1MA4 LINE L1 6007 6299 -1 3431 215 60 21 chr3 161495106 161496008 -56541150 - Looper DNA T2_type -107 1451 515 342 267 0 33 chr3 161496657 161496747 -56540411 + MER57-int LTR ERV1 2555 2641 -3690 512 252 108 27 chr3 161496767 161496989 -56540169 + MER34C LTR ERV1 158 397 -188 289 276 133 20 chr3 161497009 161497107 -56540051 + MER57-int LTR ERV1 1455 1563 -2628 283 142 208 47 chr3 161497152 161497258 -56539900 - LTR48B LTR ERV1 -288 356 234 840 242 45 19 chr3 161497717 161498089 -56539069 + MER57-int LTR ERV1 2365 3194 -1686 * 2764 247 85 96 chr3 161498076 161500576 -56536582 + MER57-int LTR ERV1 2615 6889 -648 2488 182 34 0 chr3 161500576 161501022 -56536136 - LOR1b LTR ERV1 0 461 1 2764 247 85 96 chr3 161501022 161501275 -56535883 + MER57-int LTR ERV1 6889 7143 -394 392 165 76 0 chr3 161501278 161501357 -56535801 + LTR54B LTR ERV1 2 86 -412 420 254 214 0 chr3 161501418 161501544 -56535614 + MER57A LTR ERV1 195 347 -56 213 94 0 0 chr3 161501544 161501576 -56535582 + (CTTTG)n Simple_repeat Simple_repeat 4 35 0 233 367 14 48 chr3 161502449 161502596 -56534562 - MIR3 SINE MIR -49 159 18 683 340 87 0 chr3 161502811 161503052 -56534106 + LTR33 LTR ERVL 23 284 -237 1136 239 72 27 chr3 161503737 161504181 -56532977 - LTR37B LTR ERV1 -4 464 1 368 248 24 60 chr3 161506017 161506168 -56530990 + MLT1J2 LTR MaLR 72 219 -231 22 0 0 0 chr3 161507266 161507288 -56529870 + AT_rich Low_complexity Low_complexity 1 22 0 212 97 0 81 chr3 161508173 161508235 -56528923 + (TTCTC)n Simple_repeat Simple_repeat 5 61 0 1497 92 0 0 chr3 161508236 161508432 -56528726 - AluSg/x SINE Alu -3 309 114 932 73 0 0 chr3 161508432 161508541 -56528617 + AluSg SINE Alu 14 122 -188 219 36 0 0 chr3 161509202 161509230 -56527928 + (TG)n Simple_repeat Simple_repeat 1 28 0 218 103 0 26 chr3 161509476 161509515 -56527643 + (TG)n Simple_repeat Simple_repeat 2 39 0 29 0 0 0 chr3 161509866 161509895 -56527263 + AT_rich Low_complexity Low_complexity 1 29 0 259 255 266 0 chr3 161510011 161510105 -56527053 - L2 LINE L2 -6 3266 3148 218 190 0 69 chr3 161510477 161510504 -56526654 - L2 LINE L2 -9 3304 3282 1793 169 56 45 chr3 161510504 161510966 -56526192 + MLT1C LTR MaLR 1 467 0 218 190 0 69 chr3 161510966 161510996 -56526162 - L2 LINE L2 -31 3282 3251 261 234 60 96 chr3 161512007 161512267 -56524891 + MLT1J2 LTR MaLR 221 541 -1 552 276 18 0 chr3 161513024 161513187 -56523971 - MIR SINE MIR 0 262 97 864 317 35 55 chr3 161513307 161513711 -56523447 - L2 LINE L2 0 3313 2918 541 235 33 6 chr3 161513711 161513892 -56523266 - MLT1C LTR MaLR -3 464 178 2291 101 0 3 chr3 161513892 161514189 -56522969 - AluSq SINE Alu -17 296 1 416 33 0 0 chr3 161514195 161514255 -56522903 - AluY SINE Alu -4 307 248 1062 144 40 6 chr3 161514257 161514430 -56522728 - MLT1C LTR MaLR -286 181 3 294 287 16 2 chr3 161514805 161514908 -56522250 - MLT1L LTR MaLR -342 246 152 2071 162 86 74 chr3 161514932 161515218 -56521940 + LTR44 LTR ERV1 25 321 -198 691 174 0 36 chr3 161515218 161515356 -56521802 + FLAM_C SINE Alu 1 133 0 2071 162 86 74 chr3 161515356 161515558 -56521600 + LTR44 LTR ERV1 321 519 0 630 121 0 10 chr3 161515630 161515729 -56521429 + MER4A LTR ERV1 1 98 -566 837 135 131 26 chr3 161515732 161515938 -56521220 + MER4A LTR ERV1 264 550 -114 3324 154 96 39 chr3 161515938 161516658 -56520500 - MER4E LTR ERV1 0 779 19 23 54 0 0 chr3 161517006 161517043 -56520115 + AT_rich Low_complexity Low_complexity 1 37 0 542 301 64 10 chr3 161517533 161517736 -56519422 + MIR SINE MIR 40 253 -9 1391 161 110 65 chr3 161517890 161518319 -56518839 + LTR7 LTR ERV1 1 448 -2 16200 104 18 20 chr3 161518321 161521415 -56515743 + HERVH LTR ERV1 1 2987 -4726 822 162 20 0 chr3 161521409 161521557 -56515601 + HERVH LTR ERV1 3140 3290 -4423 * 3578 82 4 6 chr3 161521547 161522050 -56515108 + HERVH LTR ERV1 3492 3993 -3720 4114 156 5 5 chr3 161522052 161522714 -56514444 + HERVH LTR ERV1 4488 5149 -2564 1157 131 87 5 chr3 161522711 161522917 -56514241 + HERVH LTR ERV1 5597 5819 -1894 * 2445 82 53 13 chr3 161522914 161523292 -56513866 + HERVH LTR ERV1 7321 7713 0 1318 163 112 70 chr3 161523292 161523722 -56513436 + LTR7 LTR ERV1 1 448 -2 22 70 0 0 chr3 161523744 161523787 -56513371 + AT_rich Low_complexity Low_complexity 1 43 0 27 49 0 0 chr3 161524437 161524478 -56512680 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chr3 161524559 161524583 -56512575 + AT_rich Low_complexity Low_complexity 1 24 0 3515 171 97 16 chr3 161524591 161525237 -56511921 + MER44D DNA MER2_type 3 578 -1909 8794 49 2 3 chr3 161525237 161526309 -56510849 + MER11C LTR ERVK 1 1071 0 3515 171 97 16 chr3 161526309 161526333 -56510825 + MER44D DNA MER2_type 578 599 -6 1499 148 8 4 chr3 161526653 161526903 -56510255 + Tigger1 DNA MER2_type 1 251 -2167 * 4279 132 25 19 chr3 161526895 161527615 -56509543 + Tigger1 DNA MER2_type 1694 2417 -1 259 203 169 0 chr3 161527684 161527743 -56509415 + Tigger2 DNA MER2_type 1 69 -2649 * 2756 131 14 7 chr3 161527741 161528177 -56508981 + Tigger2 DNA MER2_type 2280 2718 0 2847 129 32 18 chr3 161529339 161529834 -56507324 - L1MA5A LINE L1 -4 6293 5792 1756 149 30 10 chr3 161529961 161530256 -56506902 + AluSx SINE Alu 1 301 -11 485 234 249 19 chr3 161531439 161531648 -56505510 + MIR SINE MIR 6 262 0 318 360 9 0 chr3 161532277 161532391 -56504767 + L1MC4 LINE L1 6589 6703 -1339 233 132 0 57 chr3 161532391 161532444 -56504714 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 298 330 0 0 chr3 161532885 161532991 -56504167 + (CCA)n Simple_repeat Simple_repeat 3 108 0 1500 194 37 3 chr3 161533999 161534293 -56502865 + AluJo SINE Alu 1 304 -8 1497 229 149 82 chr3 161535749 161536360 -56500798 + MLT1E3 LTR MaLR 1 622 -2 207 0 0 0 chr3 161536527 161536550 -56500608 + (TC)n Simple_repeat Simple_repeat 2 24 0 363 44 0 0 chr3 161536563 161536608 -56500550 + (TG)n Simple_repeat Simple_repeat 2 46 0 295 287 63 24 chr3 161537132 161537547 -56499611 - L1M4 LINE L1 -2616 3530 3100 522 324 83 37 chr3 161537735 161538253 -56498905 - L1M4 LINE L1 -3378 2768 2227 323 379 41 9 chr3 161538273 161538492 -56498666 + L1M4 LINE L1 2600 2825 -3321 309 260 0 39 chr3 161538668 161538745 -56498413 - L2 LINE L2 -47 3266 3193 335 306 191 30 chr3 161538760 161538959 -56498199 - MIR SINE MIR -29 233 3 21 0 0 0 chr3 161540973 161540994 -56496164 + AT_rich Low_complexity Low_complexity 1 21 0 419 291 123 32 chr3 161541085 161541305 -56495853 + MIR SINE MIR 1 240 -22 30 27 0 0 chr3 161542161 161542198 -56494960 + AT_rich Low_complexity Low_complexity 1 37 0 1750 201 61 30 chr3 161543396 161543734 -56493424 + MLT2D LTR ERVL 1 354 -60 387 41 0 0 chr3 161543734 161543783 -56493375 + (TG)n Simple_repeat Simple_repeat 2 50 0 1750 201 61 30 chr3 161543783 161543838 -56493320 + MLT2D LTR ERVL 354 406 -8 201 147 0 0 chr3 161544177 161544211 -56492947 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 296 261 84 21 chr3 161544511 161544653 -56492505 - L2 LINE L2 -40 3273 3123 24 32 0 0 chr3 161545285 161545316 -56491842 + AT_rich Low_complexity Low_complexity 1 31 0 182 321 57 0 chr3 161546164 161546217 -56490941 + L2 LINE L2 3216 3271 -1 244 320 80 40 chr3 161546258 161546358 -56490800 + MIR SINE MIR 19 122 -86 237 279 25 0 chr3 161546572 161546651 -56490507 + Zaphod DNA AcHobo 25 105 -3926 357 211 116 0 chr3 161546654 161546749 -56490409 + L1ME LINE L1 5709 5814 -348 665 249 89 42 chr3 161546923 161547160 -56489998 - MLT1D LTR MaLR -78 427 180 2425 67 0 3 chr3 161547164 161547463 -56489695 - AluY SINE Alu -13 298 1 1801 88 8 4 chr3 161547491 161547729 -56489429 + AluSc SINE Alu 66 304 -5 240 295 14 53 chr3 161547732 161547907 -56489251 - MLT1E2 LTR MaLR -334 171 4 3543 133 71 51 chr3 161548273 161548922 -56488236 - MER4E LTR ERV1 -117 662 1 794 130 8 16 chr3 161548922 161549040 -56488118 + MER4A LTR ERV1 547 663 -1 457 330 25 97 chr3 161549226 161549587 -56487571 - L2 LINE L2 0 3272 2938 744 192 81 120 chr3 161549881 161550448 -56486710 - MER34B LTR ERV1 -19 634 1 201 320 51 90 chr3 161550479 161550683 -56486475 - L2 LINE L2 -896 2418 2224 351 0 0 0 chr3 161550683 161550722 -56486436 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 201 320 51 90 chr3 161550722 161550773 -56486385 - L2 LINE L2 -1090 2224 2173 189 107 0 0 chr3 161550876 161550904 -56486254 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 540 232 162 71 chr3 161550951 161551149 -56486009 - MIR SINE MIR -28 234 19 411 232 149 45 chr3 161551393 161551620 -56485538 + L1ME4a LINE L1 5657 5905 -216 1687 166 0 33 chr3 161551647 161551949 -56485209 + AluJb SINE Alu 1 292 -20 242 197 0 0 chr3 161551951 161552012 -56485146 - L1MC4 LINE L1 -1342 6700 6640 24 0 0 0 chr3 161552503 161552527 -56484631 + AT_rich Low_complexity Low_complexity 1 24 0 1623 178 0 7 chr3 161553725 161554001 -56483157 + AluJo SINE Alu 5 278 -34 529 108 0 0 chr3 161554001 161554075 -56483083 + (GGAA)n Simple_repeat Simple_repeat 1 74 0 737 173 0 32 chr3 161554075 161554260 -56482898 + GA-rich Low_complexity Low_complexity 1 179 0 288 307 51 66 chr3 161554283 161554420 -56482738 + L2 LINE L2 3177 3311 -2 196 403 0 0 chr3 161555788 161555855 -56481303 - L2 LINE L2 -1 3271 3205 230 327 75 19 chr3 161557197 161557304 -56479854 + L2 LINE L2 3181 3293 -20 316 285 92 67 chr3 161558161 161558631 -56478527 - LTR33A LTR ERVL -2 521 6 284 243 58 19 chr3 161558659 161558762 -56478396 + Charlie7 DNA MER1_type 2 108 -2504 2109 123 0 3 chr3 161558777 161559069 -56478089 + AluSc SINE Alu 3 293 -16 633 185 72 118 chr3 161559073 161559268 -56477890 - AluJo SINE Alu -30 282 97 1152 267 119 27 chr3 161559276 161559837 -56477321 + Charlie7 DNA MER1_type 78 690 -1922 460 272 29 7 chr3 161560391 161560527 -56476631 - LTR40a LTR ERVL -18 501 363 21 36 0 0 chr3 161561209 161561237 -56475921 + AT_rich Low_complexity Low_complexity 1 28 0 2157 114 3 16 chr3 161561302 161561610 -56475548 + AluSg SINE Alu 3 306 -4 2232 99 3 7 chr3 161563892 161564195 -56472963 + AluSc SINE Alu 1 302 -7 252 167 0 0 chr3 161564448 161564496 -56472662 + (ATG)n Simple_repeat Simple_repeat 2 49 0 317 244 12 12 chr3 161564519 161564601 -56472557 - MIR SINE MIR -3 259 178 1391 164 43 21 chr3 161565119 161565399 -56471759 + AluJb SINE Alu 1 286 -26 717 182 23 8 chr3 161565818 161565950 -56471208 + MLT1K LTR MaLR 447 580 -8 260 235 0 0 chr3 161566907 161566958 -56470200 + L2 LINE L2 3209 3259 -13 21 0 0 0 chr3 161566995 161567016 -56470142 + AT_rich Low_complexity Low_complexity 1 21 0 810 282 5 24 chr3 161567118 161567327 -56469831 - MIR SINE MIR -25 237 33 882 187 16 16 chr3 161567380 161567567 -56469591 - MER5A DNA MER1_type -1 188 2 456 225 201 18 chr3 161567977 161568146 -56469012 - L2 LINE L2 0 3313 3114 847 286 145 15 chr3 161568330 161568662 -56468496 - L2 LINE L2 -456 2858 2484 660 179 229 36 chr3 161568867 161569090 -56468068 + LTR37B LTR ERV1 203 468 0 284 235 15 0 chr3 161569093 161569161 -56467997 - L2 LINE L2 -829 2485 2417 2065 109 3 11 chr3 161569210 161569539 -56467619 - AluSx SINE Alu 0 327 1 1485 328 79 18 chr3 161569751 161570406 -56466752 - L2 LINE L2 -1696 1618 924 2073 133 0 0 chr3 161570546 161570840 -56466318 - AluSx SINE Alu -18 294 1 180 200 0 0 chr3 161570914 161570954 -56466204 + A-rich Low_complexity Low_complexity 1 40 0 931 258 56 89 chr3 161572656 161573241 -56463917 - MER21B LTR ERV1 -157 706 141 378 260 41 14 chr3 161573250 161573396 -56463762 - L1MC/D LINE L1 -2345 5463 5314 331 310 60 32 chr3 161573482 161573798 -56463360 - L1MC/D LINE L1 -945 5201 4877 2025 155 21 19 chr3 161573848 161574222 -56462936 + THE1C LTR MaLR 1 375 0 7568 137 42 6 chr3 161574222 161575408 -56461750 + THE1C-int LTR MaLR 1 1229 -351 1796 166 51 3 chr3 161575795 161576127 -56461031 + MER7A DNA MER2_type 1 346 0 347 351 89 57 chr3 161576158 161576660 -56460498 - L2 LINE L2 -550 2764 2221 1951 152 3 0 chr3 161576660 161576950 -56460208 + AluSx SINE Alu 1 291 -21 347 351 89 57 chr3 161576950 161577296 -56459862 - L2 LINE L2 -1093 2221 1888 197 232 36 18 chr3 161580415 161580471 -56456687 + MIR SINE MIR 156 212 -50 225 94 0 0 chr3 161582116 161582148 -56455010 + (TC)n Simple_repeat Simple_repeat 1 32 0 289 254 283 23 chr3 161582240 161582413 -56454745 - MIR SINE MIR -43 219 2 1234 206 99 11 chr3 161582748 161583030 -56454128 + MLT2D LTR ERVL 2 308 -106 288 137 0 0 chr3 161583030 161583081 -56454077 + (TC)n Simple_repeat Simple_repeat 1 51 0 692 226 89 62 chr3 161583587 161583844 -56453314 - MLT1A1 LTR MaLR 0 365 102 736 313 29 26 chr3 161583875 161584182 -56452976 - MLT-int LTR MaLR -965 770 463 963 181 10 25 chr3 161584316 161584515 -56452643 - MLT1A1-int LTR MaLR -1538 197 2 1022 216 119 9 chr3 161584518 161584745 -56452413 - MLT1A1 LTR MaLR -1 364 113 1078 246 47 97 chr3 161584791 161585369 -56451789 - MLT1G LTR MaLR -7 583 35 1395 246 44 26 chr3 161585500 161585887 -56451271 + MSTD LTR MaLR 1 394 -2 1093 113 6 0 chr3 161586372 161586540 -56450618 - L1PA13 LINE L1 -1 6162 5994 710 318 98 34 chr3 161586716 161586988 -56450170 + L2 LINE L2 2840 3152 -161 3879 100 11 0 chr3 161586988 161587536 -56449622 - MER41A LTR ERV1 0 554 1 710 318 98 34 chr3 161587536 161587703 -56449455 + L2 LINE L2 3152 3307 -6 23 92 0 0 chr3 161587992 161588057 -56449101 + AT_rich Low_complexity Low_complexity 1 65 0 2101 198 84 6 chr3 161589098 161589574 -56447584 + MER67D LTR ERV1 2 514 0 410 216 11 0 chr3 161589665 161589753 -56447405 + L1ME3A LINE L1 6072 6160 -10 517 271 58 39 chr3 161589773 161589980 -56447178 + MIR SINE MIR 52 262 0 2784 111 69 6 chr3 161590078 161590555 -56446603 + L1M1 LINE L1 2373 2879 -4686 4292 206 8 16 chr3 161590580 161591590 -56445568 + L1M1 LINE L1 3730 4731 -2834 285 291 76 60 chr3 161591693 161591944 -56445214 + LTR48 LTR ERV1 524 778 -9 263 232 18 0 chr3 161592967 161593023 -56444135 + CT-rich Low_complexity Low_complexity 2 58 0 776 171 57 11 chr3 161593052 161593227 -56443931 - MER45R DNA AcHobo -14 1567 1385 361 340 22 37 chr3 161593895 161594163 -56442995 + ERVL LTR ERVL 773 1036 -3960 3915 124 131 51 chr3 161594898 161596185 -56440973 - pTR5 LTR ERV1 -143 2295 744 387 399 20 10 chr3 161596174 161596475 -56440683 + ERVL LTR ERVL 4810 5113 -651 * 1871 106 51 27 chr3 161596475 161596768 -56440390 + AluSg SINE Alu 1 300 -10 275 339 9 0 chr3 161596788 161596897 -56440261 + ERVL LTR ERVL 5175 5284 -370 21 36 0 0 chr3 161596984 161597012 -56440146 + AT_rich Low_complexity Low_complexity 1 28 0 1288 300 20 0 chr3 161597273 161597620 -56439538 + LTR16C LTR ERVL 126 479 -12 1121 131 103 9 chr3 161598524 161598664 -56438494 - L1PA16 LINE L1 -8 6158 5990 186 43 0 0 chr3 161598664 161598687 -56438471 + (TCCC)n Simple_repeat Simple_repeat 4 26 0 1121 131 103 9 chr3 161598687 161598760 -56438398 - L1PA16 LINE L1 -176 5990 5925 1722 165 94 14 chr3 161598892 161599243 -56437915 - MLT1B LTR MaLR -11 379 1 201 74 0 0 chr3 161599339 161599366 -56437792 + (A)n Simple_repeat Simple_repeat 1 27 0 1004 259 118 8 chr3 161599727 161600101 -56437057 + L1ME3A LINE L1 5684 6098 -72 270 351 58 13 chr3 161600601 161600755 -56436403 + L2 LINE L2 2459 2619 -695 2300 215 26 60 chr3 161600823 161601330 -56435828 + MER92B LTR ERV1 1 486 -150 2380 73 10 7 chr3 161601330 161601454 -56435704 + AluY SINE Alu 1 123 -188 189 0 0 0 chr3 161601454 161601475 -56435683 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 2380 73 10 7 chr3 161601475 161601653 -56435505 + AluY SINE Alu 123 304 -7 2300 215 26 60 chr3 161601653 161601749 -56435409 + MER92B LTR ERV1 486 584 -52 218 390 130 43 chr3 161602052 161602329 -56434829 + L2 LINE L2 2950 3250 -22 285 304 65 29 chr3 161603123 161603261 -56433897 - MLT1K LTR MaLR -361 227 85 241 239 30 0 chr3 161605347 161605414 -56431744 + (TA)n Simple_repeat Simple_repeat 1 69 0 22 56 0 0 chr3 161605769 161605805 -56431353 + AT_rich Low_complexity Low_complexity 1 36 0 1476 125 17 0 chr3 161605990 161606222 -56430936 + L1PA14 LINE L1 5925 6160 -1 425 171 16 23 chr3 161606938 161607067 -56430091 + CT-rich Low_complexity Low_complexity 1 128 0 269 299 0 0 chr3 161607112 161607189 -56429969 + (TGAA)n Simple_repeat Simple_repeat 1 77 0 24 32 0 0 chr3 161607256 161607287 -56429871 + AT_rich Low_complexity Low_complexity 1 31 0 33 25 0 0 chr3 161607882 161607922 -56429236 + AT_rich Low_complexity Low_complexity 1 40 0 1188 223 61 36 chr3 161608017 161608489 -56428669 - L1MC5 LINE L1 -177 7784 7301 477 249 110 18 chr3 161608521 161608701 -56428457 + MLT1G1 LTR MaLR 10 246 -349 786 105 192 47 chr3 161608721 161608893 -56428265 + MER20 DNA MER1_type 17 213 -6 437 294 81 60 chr3 161608894 161609227 -56427931 + MLT1F LTR MaLR 215 554 -1 571 278 0 11 chr3 161609230 161609406 -56427752 - L1MC5 LINE L1 -750 7211 7038 349 294 34 14 chr3 161609530 161609676 -56427482 + L1MEc LINE L1 1512 1660 -4736 2011 124 40 13 chr3 161610415 161610713 -56426445 + AluSx SINE Alu 1 306 -6 322 321 37 11 chr3 161611560 161611747 -56425411 + L1M4 LINE L1 4772 4963 -1183 2028 78 7 11 chr3 161611851 161612122 -56425036 + AluY SINE Alu 32 301 -10 204 125 0 0 chr3 161612122 161612154 -56425004 + (GA)n Simple_repeat Simple_repeat 1 32 0 375 241 28 12 chr3 161612261 161612425 -56424733 + L1P5 LINE L1 5290 5437 -714 23 0 0 0 chr3 161613626 161613649 -56423509 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 161615316 161615339 -56421819 + AT_rich Low_complexity Low_complexity 1 23 0 3319 131 9 22 chr3 161615483 161616017 -56421141 + THE1C-int LTR MaLR 1054 1580 0 2148 138 13 39 chr3 161616017 161616402 -56420756 + THE1C LTR MaLR 1 375 0 428 301 4 36 chr3 161616551 161616800 -56420358 - L1M4 LINE L1 -1751 4395 4155 181 237 0 0 chr3 161617642 161617680 -56419478 - MIR3 SINE MIR -50 158 121 1106 89 6 6 chr3 161618476 161618634 -56418524 - L1PA3 LINE L1 -3 6152 5995 255 254 0 0 chr3 161618656 161618715 -56418443 + C-rich Low_complexity Low_complexity 1 59 0 218 225 0 14 chr3 161618743 161618814 -56418344 + C-rich Low_complexity Low_complexity 4 73 0 290 260 0 31 chr3 161618831 161618927 -56418231 + C-rich Low_complexity Low_complexity 4 96 0 239 349 12 0 chr3 161619104 161619187 -56417971 + CT-rich Low_complexity Low_complexity 2 85 0 17819 41 2 18 chr3 161619214 161621580 -56415578 - L1P LINE L1 -1431 4715 2387 180 154 103 0 chr3 161622004 161622043 -56415115 + L3 LINE CR1 1338 1380 -197 33 97 0 0 chr3 161622369 161622472 -56414686 + AT_rich Low_complexity Low_complexity 1 103 0 1472 230 73 46 chr3 161622491 161622592 -56414566 + MLT1C LTR MaLR 2 99 -368 4710 64 3 3 chr3 161622592 161623199 -56413959 + L1PA7 LINE L1 5540 6146 -8 1472 230 73 46 chr3 161623199 161623550 -56413608 + MLT1C LTR MaLR 99 466 -1 330 287 119 54 chr3 161624170 161624481 -56412677 + L1M4 LINE L1 3736 4074 -2072 2332 129 8 21 chr3 161624481 161624861 -56412297 + THE1C LTR MaLR 1 375 0 330 287 119 54 chr3 161624861 161624901 -56412257 + L1M4 LINE L1 4074 4110 -2036 257 347 35 46 chr3 161626630 161626803 -56410355 - MIR SINE MIR -39 223 53 689 297 146 5 chr3 161627563 161627782 -56409376 - MIR SINE MIR 0 262 13 2243 131 19 16 chr3 161627963 161628337 -56408821 - THE1C LTR MaLR 0 375 1 21 36 0 0 chr3 161629181 161629209 -56407949 + AT_rich Low_complexity Low_complexity 1 28 0 542 330 64 60 chr3 161629675 161630206 -56406952 - LTR67 LTR ERVL 0 557 25 24 32 0 0 chr3 161630246 161630277 -56406881 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr3 161631321 161631342 -56405816 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr3 161631520 161631545 -56405613 + AT_rich Low_complexity Low_complexity 1 25 0 964 242 32 60 chr3 161681813 161682214 -56354944 - L1M4 LINE L1 -1503 4643 4254 1221 252 90 13 chr3 161683924 161684301 -56352857 + MER65A LTR ERV1 40 445 0 1947 235 58 11 chr3 161684431 161684877 -56352281 - MLT1C LTR MaLR 0 467 1 2193 96 34 0 chr3 161684921 161685213 -56351945 + AluSx SINE Alu 1 302 -10 733 216 44 10 chr3 161685241 161685445 -56351713 + MSTA LTR MaLR 1 211 -217 592 236 73 6 chr3 161689480 161689658 -56347500 - MIR SINE MIR -3 259 70 489 96 12 48 chr3 161689703 161689786 -56347372 + MADE1 DNA Mariner 1 80 0 23 0 0 0 chr3 161690836 161690859 -56346299 + AT_rich Low_complexity Low_complexity 1 23 0 1255 273 70 36 chr3 161691123 161691351 -56345807 - L1ME3A LINE L1 -273 5897 5678 901 231 16 5 chr3 161691351 161691537 -56345621 - MER5A DNA MER1_type -1 188 1 1255 273 70 36 chr3 161691537 161691890 -56345268 - L1ME3A LINE L1 -492 5678 5296 384 272 41 73 chr3 161692143 161692389 -56344769 + L2 LINE L2 2567 2804 -510 962 162 6 29 chr3 161693008 161693181 -56343977 + MER58A DNA MER1_type 43 211 -13 4266 131 180 140 chr3 161693238 161694626 -56342532 - pTR5 LTR ERV1 0 2438 995 375 266 185 26 chr3 161696001 161696309 -56340849 - L1MC4a LINE L1 -1926 5882 5526 * 386 193 70 35 chr3 161696269 161696383 -56340775 + L1MC5 LINE L1 7505 7622 -339 945 147 6 13 chr3 161696386 161696542 -56340616 + FRAM SINE Alu 1 155 -21 275 169 0 70 chr3 161696542 161696613 -56340545 + L1MC5 LINE L1 7614 7679 -282 391 211 72 79 chr3 161696657 161696809 -56340349 + L1MC5 LINE L1 7775 7925 -36 313 293 79 20 chr3 161696795 161696976 -56340182 - L1ME LINE L1 -590 5580 5385 * 945 271 60 33 chr3 161696999 161697455 -56339703 + MER90 LTR ERV1 83 587 -27 185 258 16 65 chr3 161698716 161698778 -56338380 - MIR3 SINE MIR -139 69 11 21 0 0 0 chr3 161698947 161698968 -56338190 + AT_rich Low_complexity Low_complexity 1 21 0 4574 35 16 1 chr3 161699535 161700235 -56336923 - L1P1 LINE L1 -670 5485 4772 544 170 92 20 chr3 161700646 161700799 -56336359 + L1MA8 LINE L1 6028 6191 -100 403 315 117 10 chr3 161701245 161701442 -56335716 + LTR33A LTR ERVL 3 220 -303 1075 155 69 25 chr3 161701705 161701950 -56335208 - L1MA8 LINE L1 -5 6286 6031 246 32 0 0 chr3 161705042 161705073 -56332085 + (A)n Simple_repeat Simple_repeat 1 31 0 10820 95 6 2 chr3 161705767 161707839 -56329319 - L1PA7 LINE L1 -216 5938 3858 323 187 133 73 chr3 161709009 161709159 -56327999 + L1MC/D LINE L1 5613 5771 -2037 562 298 70 13 chr3 161709238 161709553 -56327605 + L1MC/D LINE L1 5315 5647 -2161 2163 125 0 3 chr3 161709554 161709849 -56327309 + AluSc SINE Alu 1 294 -15 1279 108 0 0 chr3 161709849 161710034 -56327124 + L1PB1 LINE L1 5964 6148 -3 2781 77 8 6 chr3 161711158 161711521 -56325637 + SVA Other Other 1014 1377 -9 2133 114 0 0 chr3 161711567 161711873 -56325285 + AluSg SINE Alu 1 306 0 1751 226 39 47 chr3 161711884 161712394 -56324764 + MLT2B1 LTR ERVL 15 520 0 226 175 62 93 chr3 161712491 161712588 -56324570 + L1MC/D LINE L1 5644 5737 -2071 241 302 12 0 chr3 161712622 161712708 -56324450 + A-rich Low_complexity Low_complexity 3 89 0 790 186 86 21 chr3 161714103 161714323 -56322835 - MSTC LTR MaLR -161 235 1 652 264 15 15 chr3 161714325 161714522 -56322636 + LTR16C LTR ERVL 295 491 0 272 244 90 0 chr3 161715195 161715273 -56321885 + MLT1F1 LTR MaLR 292 376 -191 797 230 11 0 chr3 161715442 161715616 -56321542 + MLT1F1 LTR MaLR 392 567 0 657 337 52 54 chr3 161715782 161716337 -56320821 + HERVL LTR ERVL 1948 2501 -3263 595 330 37 51 chr3 161717247 161717681 -56319477 + HERVL LTR ERVL 4128 4555 -1099 261 323 56 41 chr3 161718074 161718343 -56318815 + HERVL LTR ERVL 5064 5336 -149 870 295 62 26 chr3 161718513 161718900 -56318258 + LTR16C LTR ERVL 89 489 -2 367 237 52 31 chr3 161719188 161719285 -56317873 - MIR SINE MIR -4 258 160 8942 78 1 2 chr3 161720570 161721855 -56315303 + L1P LINE L1 1196 2478 -3668 2490 211 70 16 chr3 161721890 161722501 -56314657 + MER21B LTR ERV1 220 863 0 207 100 0 0 chr3 161722857 161722887 -56314271 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 1464 126 0 14 chr3 161722967 161723181 -56313977 - AluY SINE Alu -100 211 1 21 0 0 0 chr3 161723528 161723549 -56313609 + AT_rich Low_complexity Low_complexity 1 21 0 406 263 45 56 chr3 161723574 161723772 -56313386 - MLT1G LTR MaLR -57 533 338 13781 103 26 8 chr3 161724173 161726453 -56310705 - L1P LINE L1 -2483 3663 1341 2222 201 27 20 chr3 161726454 161727047 -56310111 - L1P LINE L1 -4546 1600 1004 1655 176 3 30 chr3 161728085 161728386 -56308772 - AluJo SINE Alu -19 293 1 2363 103 0 3 chr3 161728680 161728990 -56308168 - AluSx SINE Alu -3 309 1 303 210 32 0 chr3 161728990 161729052 -56308106 + MER5A DNA MER1_type 126 189 0 600 97 177 32 chr3 161729443 161729567 -56307591 - MER30 DNA MER1_type -88 142 1 501 259 38 8 chr3 161729597 161729746 -56307412 + L1MC/D LINE L1 5526 5681 -489 234 311 9 46 chr3 161730351 161730558 -56306600 + CT-rich Low_complexity Low_complexity 1 199 0 490 200 53 27 chr3 161731235 161731385 -56305773 + MSTD LTR MaLR 243 396 0 377 258 123 45 chr3 161732338 161732493 -56304665 + MIR SINE MIR 41 207 -55 721 227 175 25 chr3 161732879 161733205 -56303953 - MLT1E2 LTR MaLR -234 392 18 425 332 92 30 chr3 161733321 161733583 -56303575 + L1MEc LINE L1 1539 1816 -4580 381 131 0 0 chr3 161733773 161733834 -56303324 + (TG)n Simple_repeat Simple_repeat 1 61 0 258 229 84 0 chr3 161733939 161734022 -56303136 + L1MEc LINE L1 2215 2304 -4092 3923 155 13 29 chr3 161734040 161734829 -56302329 + L1P LINE L1 387 1162 -4984 1934 157 3 0 chr3 161736833 161737127 -56300031 + AluSp SINE Alu 6 300 -13 2028 138 10 0 chr3 161738846 161739144 -56298014 + AluSp SINE Alu 3 303 -10 3275 144 59 16 chr3 161740849 161741494 -56295664 + Tigger4(Zombi) DNA MER2_type 2059 2731 0 271 400 11 0 chr3 161741693 161741788 -56295370 + L2 LINE L2 3136 3231 -41 1790 103 26 0 chr3 161741837 161742108 -56295050 - L1MA1 LINE L1 -9 6293 6016 23 54 0 0 chr3 161742139 161742176 -56294982 + AT_rich Low_complexity Low_complexity 1 37 0 2574 117 112 0 chr3 161744185 161744630 -56292528 + LTR44 LTR ERV1 25 519 0 206 157 59 0 chr3 161745190 161745241 -56291917 + (TAGA)n Simple_repeat Simple_repeat 2 55 0 492 94 41 33 chr3 161746262 161746517 -56290641 + (TA)n Simple_repeat Simple_repeat 1 257 0 2215 174 26 9 chr3 161746971 161747390 -56289768 - MSTB LTR MaLR 0 426 1 284 336 55 0 chr3 161747498 161747608 -56289550 + MIR SINE MIR 38 153 -109 21436 82 3 2 chr3 161747751 161751510 -56285648 + L1PA6 LINE L1 2384 6154 0 478 284 80 68 chr3 161751629 161752681 -56284477 + L1MEc LINE L1 2924 3995 -2220 204 40 0 0 chr3 161752681 161752706 -56284452 + (CA)n Simple_repeat Simple_repeat 2 26 0 478 284 80 68 chr3 161752706 161752898 -56284260 + L1MEc LINE L1 3995 4183 -2032 389 301 94 57 chr3 161753258 161753713 -56283445 + L1MEc LINE L1 4643 5114 -1101 207 304 0 14 chr3 161753915 161753984 -56283174 + CT-rich Low_complexity Low_complexity 5 72 0 321 231 172 15 chr3 161754641 161754775 -56282383 + L1ME4a LINE L1 5965 6119 -2 23 0 0 0 chr3 161754910 161754933 -56282225 + AT_rich Low_complexity Low_complexity 1 23 0 1043 201 117 0 chr3 161756420 161756729 -56280429 - L1M4 LINE L1 -3119 3027 2683 477 47 0 0 chr3 161758061 161758125 -56279033 + (TG)n Simple_repeat Simple_repeat 2 65 0 481 55 27 0 chr3 161758443 161758516 -56278642 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 2542 36 0 16 chr3 161758527 161758831 -56278327 + AluY SINE Alu 1 299 -12 365 286 68 48 chr3 161759142 161759348 -56277810 - HSATI Satellite Satellite -324 253 44 1086 232 74 9 chr3 161759733 161760069 -56277089 + L1P LINE L1 2 359 -5787 223 158 18 18 chr3 161763463 161763520 -56273638 + (TG)n Simple_repeat Simple_repeat 1 57 0 23 0 0 0 chr3 161763549 161763572 -56273586 + AT_rich Low_complexity Low_complexity 1 23 0 1399 215 57 28 chr3 161763581 161763935 -56273223 - MLT1D LTR MaLR 0 505 142 418 203 130 23 chr3 161764894 161765071 -56272087 - MER5C DNA MER1_type 0 324 129 967 292 45 7 chr3 161765211 161765636 -56271522 - L1M4 LINE L1 -1540 4606 4166 2141 205 160 33 chr3 161766095 161766671 -56270487 + MLT1E1 LTR MaLR 6 654 0 21 0 0 0 chr3 161766778 161766799 -56270359 + AT_rich Low_complexity Low_complexity 1 21 0 233 247 71 32 chr3 161770012 161770166 -56266992 + L1MEc LINE L1 1263 1422 -4974 1036 171 0 78 chr3 161771044 161771289 -56265869 + L1 LINE L1 4781 5006 -1140 406 91 0 0 chr3 161771285 161771340 -56265818 - L1PA6 LINE L1 -280 5874 5820 * 1786 88 50 8 chr3 161771308 161771569 -56265589 + L1PA7 LINE L1 5827 6098 -56 267 294 137 20 chr3 161773627 161773773 -56263385 + MIR SINE MIR 68 230 -32 272 290 0 0 chr3 161773951 161774020 -56263138 - MIR SINE MIR 0 262 194 24 32 0 0 chr3 161824466 161824497 -56212661 + AT_rich Low_complexity Low_complexity 1 31 0 276 273 0 0 chr3 161824810 161824887 -56212271 + (TA)n Simple_repeat Simple_repeat 1 77 0 27 29 0 0 chr3 161824964 161824998 -56212160 + AT_rich Low_complexity Low_complexity 1 34 0 1689 169 201 3 chr3 161825117 161825466 -56211692 - MER47B DNA MER2_type 0 418 1 23 0 0 0 chr3 161825889 161825912 -56211246 + AT_rich Low_complexity Low_complexity 1 23 0 254 236 25 32 chr3 161826013 161826170 -56210988 + (TA)n Simple_repeat Simple_repeat 1 156 0 710 36 0 0 chr3 161826577 161826661 -56210497 + L1P5 LINE L1 5523 5606 -545 * 3540 106 2 0 chr3 161826660 161827161 -56209997 - L1PBa LINE L1 -5010 1853 1352 * 8241 154 23 11 chr3 161827159 161829518 -56207640 + L1PB1 LINE L1 3572 5967 -184 2228 105 0 3 chr3 161829518 161829813 -56207345 + AluSc SINE Alu 1 294 -15 8241 154 23 11 chr3 161829813 161830001 -56207157 + L1PB1 LINE L1 5967 6151 0 452 96 12 48 chr3 161830902 161830985 -56206173 - MADE1 DNA Mariner 0 80 1 635 225 73 6 chr3 161831030 161831208 -56205950 + MIR SINE MIR 70 259 -3 205 246 14 0 chr3 161831887 161831956 -56205202 + (CCCCG)n Simple_repeat Simple_repeat 1 70 0 252 59 0 0 chr3 161835435 161835469 -56201689 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 27 0 0 0 chr3 161835495 161835522 -56201636 + AT_rich Low_complexity Low_complexity 1 27 0 372 237 52 31 chr3 161836146 161836243 -56200915 + MIR SINE MIR 160 258 -4 991 292 62 26 chr3 161836531 161836918 -56200240 - LTR16C LTR ERVL -2 489 89 361 318 56 56 chr3 161837088 161837413 -56199745 - ERVL LTR ERVL -149 5344 5013 788 347 50 38 chr3 161837749 161838270 -56198888 - ERVL LTR ERVL -1099 4555 4029 1126 327 46 49 chr3 161838316 161839098 -56198060 - ERVL LTR ERVL -1778 3986 3207 1995 340 55 42 chr3 161839254 161840479 -56196679 - ERVL LTR ERVL -2575 3189 1948 828 236 11 0 chr3 161840645 161840819 -56196339 - MLT1F1 LTR MaLR 0 567 392 298 244 90 0 chr3 161840988 161841066 -56196092 - MLT1F1 LTR MaLR -191 376 292 1076 316 66 25 chr3 161841740 161841939 -56195219 - LTR16C LTR ERVL 0 491 301 1463 214 58 51 chr3 161841939 161842332 -56194826 + MSTD LTR MaLR 1 396 0 1076 316 66 25 chr3 161842332 161842603 -56194555 - LTR16C LTR ERVL -190 301 2 21 36 0 0 chr3 161842807 161842835 -56194323 + AT_rich Low_complexity Low_complexity 1 28 0 373 258 123 45 chr3 161843280 161843435 -56193723 + MIR SINE MIR 41 207 -55 830 224 175 25 chr3 161843821 161844147 -56193011 - MLT1E2 LTR MaLR -234 392 18 246 300 77 34 chr3 161844306 161844525 -56192633 + L1ME3A LINE L1 1587 1952 -4264 236 267 13 0 chr3 161844640 161844715 -56192443 + L1ME3A LINE L1 1998 2073 -4323 411 113 0 0 chr3 161844715 161844777 -56192381 + (TG)n Simple_repeat Simple_repeat 2 63 0 246 291 133 0 chr3 161844806 161844964 -56192194 + L1ME3A LINE L1 2126 2304 -4092 32523 87 8 55 chr3 161844982 161851041 -56186117 + L1PA6 LINE L1 387 6154 0 710 286 115 56 chr3 161851156 161852211 -56184947 + L1ME3A LINE L1 2924 3915 -2300 204 40 0 0 chr3 161852211 161852236 -56184922 + (CA)n Simple_repeat Simple_repeat 2 26 0 710 286 115 56 chr3 161852236 161853407 -56183751 + L1ME3A LINE L1 3915 5282 -933 216 264 9 9 chr3 161853413 161853519 -56183639 + CT-rich Low_complexity Low_complexity 3 108 0 239 183 226 32 chr3 161853652 161853745 -56183413 + L1P2 LINE L1 5338 5448 -706 2169 93 0 4 chr3 161853751 161854055 -56183103 + AluSc SINE Alu 3 305 0 2116 216 39 45 chr3 161854066 161854575 -56182583 + MLT2B1 LTR ERVL 15 520 0 233 266 0 53 chr3 161854755 161854849 -56182309 + GA-rich Low_complexity Low_complexity 3 91 0 * 237 305 12 0 chr3 161854803 161854885 -56182273 + A-rich Low_complexity Low_complexity 3 85 0 510 252 118 106 chr3 161854885 161855301 -56181857 + L1ME3A LINE L1 5802 6222 -17 313 270 130 43 chr3 161855321 161855440 -56181718 - L1ME LINE L1 -401 5720 5613 2867 7 0 0 chr3 161855440 161855749 -56181409 - AluY SINE Alu -2 309 1 313 270 130 43 chr3 161855749 161855760 -56181398 - L1ME LINE L1 -508 5613 5604 627 42 21 21 chr3 161855760 161855856 -56181302 + (TAGA)n Simple_repeat Simple_repeat 4 99 0 313 270 130 43 chr3 161855856 161855909 -56181249 - L1ME LINE L1 -517 5604 5520 531 43 0 0 chr3 161856143 161856213 -56180945 + (CA)n Simple_repeat Simple_repeat 2 71 0 1117 204 117 0 chr3 161857543 161857852 -56179306 + L1M4 LINE L1 2683 3027 -3119 23 0 0 0 chr3 161859339 161859362 -56177796 + AT_rich Low_complexity Low_complexity 1 23 0 323 231 172 15 chr3 161859497 161859631 -56177527 - L1ME4a LINE L1 -2 6119 5965 232 307 15 22 chr3 161859870 161860007 -56177151 - L1ME4a LINE L1 -436 5685 5550 655 230 0 0 chr3 161860007 161860133 -56177025 + MSTD LTR MaLR 1 126 -302 1060 151 6 2 chr3 161860165 161860342 -56176816 + MSTD LTR MaLR 218 626 0 23 0 0 0 chr3 161861873 161861896 -56175262 + AT_rich Low_complexity Low_complexity 1 23 0 1253 277 69 34 chr3 161862160 161862388 -56174770 - L1ME3A LINE L1 -273 5897 5678 854 232 16 0 chr3 161862388 161862573 -56174585 - MER5A DNA MER1_type -1 188 1 1253 277 69 34 chr3 161862573 161862926 -56174232 - L1ME3A LINE L1 -492 5678 5296 495 316 79 48 chr3 161863179 161863534 -56173624 + L2 LINE L2 2567 2932 -382 529 287 46 50 chr3 161863555 161863837 -56173321 + L2 LINE L2 3033 3313 0 25 65 0 0 chr3 161864591 161864637 -56172521 + AT_rich Low_complexity Low_complexity 1 46 0 586 159 100 18 chr3 161864882 161865052 -56172106 + L1MA8 LINE L1 6028 6211 -80 463 317 121 9 chr3 161865481 161865705 -56171453 + LTR33A LTR ERVL 3 251 -272 1045 143 69 25 chr3 161865941 161866186 -56170972 - L1MA8 LINE L1 -5 6286 6031 349 326 46 24 chr3 161866415 161866716 -56170442 - L1ME4a LINE L1 -589 5575 5268 560 125 143 0 chr3 161869253 161869365 -56167793 - L1MB7 LINE L1 -9 6175 6048 511 175 92 42 chr3 161869370 161869490 -56167668 + MLT1D LTR MaLR 378 503 -2 21 71 0 0 chr3 161869616 161869658 -56167500 + AT_rich Low_complexity Low_complexity 1 42 0 2375 91 0 0 chr3 161869867 161870175 -56166983 - AluSc SINE Alu 0 309 2 524 158 0 0 chr3 161870182 161870264 -56166894 - tRNA-Leu-CTT tRNA tRNA -3 82 1 18137 89 6 7 chr3 161870608 161874000 -56163158 - L1PA7 LINE L1 0 6154 2768 2024 136 0 0 chr3 161874000 161874302 -56162856 - AluSx SINE Alu -8 304 3 587 248 22 0 chr3 161874315 161874452 -56162706 - MIR SINE MIR -11 251 112 22 56 0 0 chr3 161875401 161875437 -56161721 + AT_rich Low_complexity Low_complexity 1 36 0 343 267 20 0 chr3 161875564 161875665 -56161493 + (CATATA)n Simple_repeat Simple_repeat 6 108 0 501 271 104 56 chr3 161875720 161876170 -56160988 - L1MB7 LINE L1 -439 5682 5266 25 0 0 0 chr3 161876252 161876277 -56160881 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr3 161876382 161876406 -56160752 + AT_rich Low_complexity Low_complexity 1 24 0 457 258 108 45 chr3 161876436 161876789 -56160369 - L1MB7 LINE L1 -1171 4975 4601 247 282 141 0 chr3 161877484 161877562 -56159596 + MIR SINE MIR 53 141 -121 249 380 39 0 chr3 161877798 161877977 -56159181 - L2 LINE L2 -5 3308 3123 21 0 0 0 chr3 161878090 161878111 -56159047 + AT_rich Low_complexity Low_complexity 1 21 0 2054 130 32 0 chr3 161880976 161881292 -56155866 - L1PA16 LINE L1 -9 6157 5832 22 35 0 0 chr3 161882003 161882032 -56155126 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr3 161883088 161883109 -56154049 + (TAA)n Simple_repeat Simple_repeat 2 22 0 3929 151 8 13 chr3 161883395 161884457 -56152701 - L1PA15 LINE L1 -270 5895 4843 3517 202 6 1 chr3 161884468 161885162 -56151996 + L1P LINE L1 3501 4197 -1949 * 19663 180 32 15 chr3 161885152 161889388 -56147770 + L1M1 LINE L1 15 4412 -3153 2015 86 48 0 chr3 161889388 161889689 -56147469 + AluY SINE Alu 1 314 0 19663 180 32 15 chr3 161889689 161891989 -56145169 + L1M1 LINE L1 4412 6670 -895 432 127 42 0 chr3 161891989 161892060 -56145098 - LTR22B LTR ERVK 0 492 419 320 363 12 6 chr3 161892205 161892373 -56144785 + T-rich Low_complexity Low_complexity 4 172 0 * 337 283 5 68 chr3 161892253 161892444 -56144714 + CT-rich Low_complexity Low_complexity 1 179 0 983 75 295 0 chr3 161892655 161892828 -56144330 + LTR12 LTR ERV1 62 285 -429 334 244 11 0 chr3 161892829 161892919 -56144239 + LTR30 LTR ERV1 553 643 -79 2303 101 48 0 chr3 161892921 161893348 -56143810 + LTR12 LTR ERV1 375 714 0 4633 100 20 23 chr3 161893348 161894087 -56143071 + L1MA1 LINE L1 5559 6295 -7 3075 208 11 10 chr3 161894102 161894798 -56142360 + L1 LINE L1 4174 4870 -1276 635 283 176 3 chr3 161895715 161896033 -56141125 + L2 LINE L2 2603 2975 -339 230 246 43 14 chr3 161897369 161897438 -56139720 - MIR SINE MIR -68 194 124 223 356 59 0 chr3 161897570 161897671 -56139487 - MIR SINE MIR -136 126 20 306 0 0 0 chr3 161898365 161898399 -56138759 + (A)n Simple_repeat Simple_repeat 1 34 0 1772 258 64 87 chr3 161899341 161899950 -56137208 - MLT1G LTR MaLR 0 590 1 206 167 21 0 chr3 161900112 161900160 -56136998 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 189 271 21 0 chr3 161900400 161900448 -56136710 + MIR SINE MIR 83 131 -131 22 0 0 0 chr3 161903210 161903232 -56133926 + AT_rich Low_complexity Low_complexity 1 22 0 2655 194 61 55 chr3 161903891 161904612 -56132546 - LTR8A LTR ERV1 -2 725 1 639 278 70 22 chr3 161905194 161905421 -56131737 - MIR SINE MIR -10 252 15 194 61 0 30 chr3 161905620 161905653 -56131505 + (TTTTTG)n Simple_repeat Simple_repeat 5 36 0 433 202 22 0 chr3 161905653 161905742 -56131416 - MIR SINE MIR -26 236 146 22 0 0 0 chr3 161906664 161906686 -56130472 + AT_rich Low_complexity Low_complexity 1 22 0 3633 183 80 30 chr3 161907816 161908205 -56128953 - L1MD1 LINE L1 -1 6241 5873 2191 117 3 0 chr3 161908205 161908504 -56128654 - AluSx SINE Alu -12 300 1 3633 183 80 30 chr3 161908504 161909050 -56128108 - L1MD1 LINE L1 -369 5873 5262 1259 242 49 73 chr3 161909046 161909113 -56128045 - L1M4 LINE L1 -816 5330 5263 * 225 0 0 0 chr3 161909113 161909138 -56128020 + (TG)n Simple_repeat Simple_repeat 2 26 0 * 306 0 0 0 chr3 161909137 161909171 -56127987 + (TA)n Simple_repeat Simple_repeat 1 34 0 1259 242 49 73 chr3 161909138 161909170 -56127988 - L1M4 LINE L1 -883 5263 5232 315 0 0 0 chr3 161909170 161909205 -56127953 + (GA)n Simple_repeat Simple_repeat 2 36 0 1960 120 0 0 chr3 161909215 161909481 -56127677 - AluSx SINE Alu -46 266 1 1259 242 49 73 chr3 161909481 161909812 -56127346 - L1M4 LINE L1 -923 5223 4939 195 42 0 0 chr3 161909812 161909836 -56127322 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1259 242 49 73 chr3 161909836 161910052 -56127106 - L1M4 LINE L1 -1207 4939 4719 209 271 21 0 chr3 161910054 161910102 -56127056 + L2 LINE L2 3191 3239 -33 3079 198 86 32 chr3 161910132 161911030 -56126128 - L1MB8 LINE L1 -8 6239 5176 381 248 0 23 chr3 161911058 161911191 -56125967 - L1MB8 LINE L1 -2632 3583 3454 * 3341 156 11 16 chr3 161911189 161911324 -56125834 + L1P LINE L1 4508 4642 -1504 2196 132 0 0 chr3 161911324 161911635 -56125523 - AluSx SINE Alu 0 312 2 3341 156 11 16 chr3 161911635 161912115 -56125043 + L1P LINE L1 4642 5120 -1026 562 240 51 123 chr3 161912246 161912591 -56124567 - L1MB8 LINE L1 -3787 2431 2185 2912 78 29 38 chr3 161912591 161912633 -56124525 - MLT2A1 LTR ERVL 0 444 403 468 0 0 0 chr3 161912633 161912685 -56124473 + (TA)n Simple_repeat Simple_repeat 2 53 0 2912 78 29 38 chr3 161912685 161913090 -56124068 - MLT2A1 LTR ERVL -41 403 1 562 240 51 123 chr3 161913090 161913515 -56123643 - L1MB8 LINE L1 -4033 2185 1731 223 286 16 0 chr3 161913875 161913938 -56123220 + (CATATA)n Simple_repeat Simple_repeat 6 69 0 275 287 99 0 chr3 161917657 161917758 -56119400 - MIR SINE MIR -71 191 81 275 341 56 56 chr3 161918021 161918200 -56118958 + MIR SINE MIR 5 183 -79 302 281 62 86 chr3 161919809 161920019 -56117139 - L2 LINE L2 -4 3309 3105 336 281 79 7 chr3 161920390 161920529 -56116629 + MIR SINE MIR 53 201 -61 328 316 52 35 chr3 161920817 161920991 -56116167 + MIR SINE MIR 81 257 -5 455 326 40 14 chr3 161922110 161922270 -56114888 + MIR3 SINE MIR 7 171 -37 279 0 0 0 chr3 161923483 161923514 -56113644 + (TG)n Simple_repeat Simple_repeat 2 32 0 4030 215 46 54 chr3 161923563 161924371 -56112787 - L1MD1 LINE L1 -116 6126 5313 550 89 13 0 chr3 161924371 161924450 -56112708 + MADE1 DNA Mariner 1 80 0 4030 215 46 54 chr3 161924450 161925020 -56112138 - L1MD1 LINE L1 -929 5313 4740 1904 147 84 3 chr3 161925020 161925354 -56111804 + MER46B DNA MER2_type 1 236 0 4030 215 46 54 chr3 161925354 161926110 -56111048 - L1MD1 LINE L1 -1502 4740 4000 1591 175 84 8 chr3 161926119 161926490 -56110668 + Charlie1b DNA MER1_type 94 492 -31 20588 55 6 4 chr3 161926499 161929943 -56107215 - L1PA6 LINE L1 -13 6141 2689 9256 58 1 0 chr3 161929943 161931121 -56106037 + L1PA6 LINE L1 1527 2705 -3441 8227 11 0 0 chr3 161931256 161932181 -56104977 - HERVK LTR ERVK -3325 3918 2994 229 235 0 61 chr3 161932222 161932337 -56104821 + C-rich Low_complexity Low_complexity 1 108 0 13284 10 3 0 chr3 161932469 161933967 -56103191 - HERVK LTR ERVK -4332 2911 1409 12487 15 0 1 chr3 161934067 161935483 -56101675 - HERVK LTR ERVK -5828 1415 1 361 296 79 13 chr3 161935712 161935864 -56101294 - L2 LINE L2 -5 3308 3147 575 225 0 0 chr3 161935900 161936011 -56101147 + FLAM_C SINE Alu 1 111 -32 32 26 0 0 chr3 161936018 161936057 -56101101 + AT_rich Low_complexity Low_complexity 1 39 0 189 0 0 0 chr3 161936785 161936806 -56100352 + (TTG)n Simple_repeat Simple_repeat 2 22 0 2200 85 0 0 chr3 161937334 161937628 -56099530 - L1PA6 LINE L1 -1 6153 5860 186 160 20 60 chr3 161937678 161937728 -56099430 - L2 LINE L2 -2 3311 3264 920 196 97 32 chr3 161938141 161938482 -56098676 - Charlie1b DNA MER1_type -1 522 160 5313 66 1 38 chr3 161938482 161939196 -56097962 + LTR12 LTR ERV1 1 688 0 34863 102 13 10 chr3 161939209 161944433 -56092725 + HERV9 LTR ERV1 40 4980 -3419 1910 96 21 26 chr3 161944409 161944829 -56092329 + HERV17 LTR ERV1 1262 3446 -3203 * 4876 83 2 0 chr3 161944824 161945466 -56091692 + HERV17 LTR ERV1 7757 8399 0 5932 79 35 32 chr3 161945466 161946287 -56090871 + LTR12 LTR ERV1 1 824 -2 715 236 25 6 chr3 161946294 161946451 -56090707 - Charlie1b DNA MER1_type -361 162 3 2755 223 51 33 chr3 161946591 161947567 -56089591 + L1MD2 LINE L1 4205 5218 -1141 7739 23 0 0 chr3 161947567 161948714 -56088444 + L1PA3 LINE L1 5002 6152 -3 2755 223 51 33 chr3 161948714 161949337 -56087821 + L1MD2 LINE L1 5218 5828 -531 1077 186 4 52 chr3 161949338 161949569 -56087589 - AluJo SINE Alu -15 297 78 2202 219 45 8 chr3 161949569 161950076 -56087082 + L1MD2 LINE L1 5814 6339 -20 30 27 0 0 chr3 161951218 161951255 -56085903 + AT_rich Low_complexity Low_complexity 1 37 0 1143 208 12 37 chr3 161951663 161951908 -56085250 + AluJo SINE Alu 42 280 -32 24 53 0 0 chr3 161952047 161952085 -56085073 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr3 161952105 161952127 -56085031 + AT_rich Low_complexity Low_complexity 1 22 0 664 187 16 8 chr3 161953681 161953804 -56083354 + FLAM_C SINE Alu 1 124 -19 969 256 71 64 chr3 161953953 161954403 -56082755 + LTR16A1 LTR ERVL 1 453 -4 1944 144 0 0 chr3 161955682 161955966 -56081192 + AluSg SINE Alu 1 284 -26 21 0 0 0 chr3 161955966 161955987 -56081171 + AT_rich Low_complexity Low_complexity 1 21 0 382 256 166 93 chr3 161956205 161956615 -56080543 - MLT1H LTR MaLR 0 549 110 259 107 67 0 chr3 161956802 161956877 -56080281 + (TA)n Simple_repeat Simple_repeat 1 80 0 27 29 0 0 chr3 161957320 161957354 -56079804 + AT_rich Low_complexity Low_complexity 1 34 0 27 81 0 0 chr3 161957861 161957923 -56079235 + AT_rich Low_complexity Low_complexity 1 62 0 1119 123 0 67 chr3 161958122 161958301 -56078857 + AluSg SINE Alu 1 167 -143 494 352 16 11 chr3 161958306 161958488 -56078670 + L1ME4a LINE L1 236 418 -5978 207 162 0 0 chr3 161958599 161958636 -56078522 + (TA)n Simple_repeat Simple_repeat 1 37 0 473 70 0 14 chr3 161958704 161958775 -56078383 + (TA)n Simple_repeat Simple_repeat 1 70 0 273 270 10 20 chr3 161958851 161958951 -56078207 + L1ME4a LINE L1 586 684 -5712 5482 175 43 35 chr3 161958951 161959605 -56077553 + L1MC1 LINE L1 4715 5362 -971 1896 181 19 16 chr3 161959605 161959969 -56077189 - MLT1A1 LTR MaLR 0 365 1 5482 175 43 35 chr3 161959969 161960921 -56076237 + L1MC1 LINE L1 5362 6333 0 2372 222 66 74 chr3 161960981 161961042 -56076116 + L1ME4a LINE L1 2607 2667 -3548 1476 126 0 0 chr3 161961042 161961272 -56075886 + AluSg/x SINE Alu 77 306 0 2372 222 66 74 chr3 161961272 161962451 -56074707 + L1ME4a LINE L1 2667 4053 -2162 1158 283 71 24 chr3 161962672 161963246 -56073912 + L1ME4a LINE L1 5368 5980 -210 367 239 94 31 chr3 161963366 161963525 -56073633 + L1M4 LINE L1 3281 3449 -2697 1828 180 26 0 chr3 161963545 161963856 -56073302 + MER2 DNA MER2_type 2 320 -25 348 24 0 0 chr3 161963864 161963905 -56073253 + (TG)n Simple_repeat Simple_repeat 2 42 0 205 256 0 0 chr3 161964360 161964399 -56072759 + (TG)n Simple_repeat Simple_repeat 1 39 0 * 226 204 0 0 chr3 161964398 161964442 -56072716 + GA-rich Low_complexity Low_complexity 1 44 0 1528 83 9 0 chr3 161964512 161964729 -56072429 - L1PA13 LINE L1 0 6163 5945 25 0 0 0 chr3 161965477 161965502 -56071656 + AT_rich Low_complexity Low_complexity 1 25 0 377 345 80 27 chr3 161965548 161966113 -56071045 + L1MEc LINE L1 35 676 -5720 818 149 8 15 chr3 161966135 161966269 -56070889 + FLAM_C SINE Alu 1 133 0 401 355 7 7 chr3 161966366 161966507 -56070651 + L2 LINE L2 3167 3307 -6 22 0 0 0 chr3 161966524 161966546 -56070612 + AT_rich Low_complexity Low_complexity 1 22 0 467 167 0 0 chr3 161966647 161966719 -56070439 - tRNA-His-CAC tRNA tRNA -3 72 1 500 212 82 27 chr3 161968066 161968212 -56068946 + Charlie8 DNA MER1_type 107 260 -2157 395 316 0 0 chr3 161968476 161968574 -56068584 - LTR33 LTR ERVL -306 215 118 1855 333 78 19 chr3 161968585 161969806 -56067352 - MERVL LTR ERVL -519 4966 3674 1205 228 156 19 chr3 161970663 161971092 -56066066 - MER113 DNA MER1_type? -33 488 1 217 254 0 17 chr3 161971290 161971349 -56065809 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 2147 128 0 0 chr3 161972270 161972574 -56064584 + AluSx SINE Alu 1 304 -8 30 45 0 0 chr3 161972952 161972996 -56064162 + AT_rich Low_complexity Low_complexity 1 44 0 28 29 0 0 chr3 161974093 161974128 -56063030 + AT_rich Low_complexity Low_complexity 1 35 0 351 286 246 6 chr3 161974139 161974314 -56062844 - MIR SINE MIR 0 262 46 325 281 53 0 chr3 161974600 161974714 -56062444 - LTR33A LTR ERVL 0 523 404 375 209 105 115 chr3 161974848 161975039 -56062119 - LTR33A LTR ERVL -333 190 2 1632 138 28 7 chr3 161975483 161975773 -56061385 - L1MB7 LINE L1 -28 6156 5861 5821 159 1 21 chr3 161975788 161977513 -56059645 - L1PB1 LINE L1 -1 6150 4457 2130 123 0 0 chr3 161977525 161977842 -56059316 - AluSx SINE Alu 0 317 1 26 0 0 0 chr3 161977853 161977879 -56059279 + AT_rich Low_complexity Low_complexity 1 26 0 345 145 0 0 chr3 161977946 161978008 -56059150 + (TA)n Simple_repeat Simple_repeat 2 63 0 418 273 48 55 chr3 161978188 161978353 -56058805 + HAL1 LINE L1 1220 1383 -1124 403 291 21 21 chr3 161978518 161978659 -56058499 + HAL1 LINE L1 1430 1570 -937 225 236 0 34 chr3 161978659 161978748 -56058410 + (CATATA)n Simple_repeat Simple_repeat 3 88 0 300 336 17 0 chr3 161979507 161979623 -56057535 - L1ME4a LINE L1 -237 5884 5767 5414 134 55 57 chr3 161979626 161980742 -56056416 + L1MA9 LINE L1 5198 6304 -8 23 68 0 0 chr3 161980988 161981032 -56056126 + AT_rich Low_complexity Low_complexity 1 44 0 319 321 79 16 chr3 161981119 161981309 -56055849 - HAL1 LINE L1 -744 1763 1562 214 189 75 38 chr3 161981599 161981652 -56055506 + L2 LINE L2 3258 3312 -1 187 326 0 0 chr3 161982155 161982204 -56054954 + L2 LINE L2 3265 3313 0 338 61 20 0 chr3 161982738 161982787 -56054371 + (TG)n Simple_repeat Simple_repeat 1 50 0 401 54 18 0 chr3 161982787 161982843 -56054315 + (GA)n Simple_repeat Simple_repeat 2 58 0 216 0 0 0 chr3 161982918 161982942 -56054216 + (T)n Simple_repeat Simple_repeat 1 24 0 511 351 16 11 chr3 161982991 161983179 -56053979 - MIR3 SINE MIR -2 206 18 1350 92 17 59 chr3 161984647 161984885 -56052273 - L1PA10 LINE L1 -1 6167 5940 482 284 115 83 chr3 161985416 161985655 -56051503 + MLT1J2 LTR MaLR 21 278 -172 3699 86 318 0 chr3 161985655 161986281 -56050877 + LTR12 LTR ERV1 1 825 -1 482 284 115 83 chr3 161986281 161986414 -56050744 + MLT1J2 LTR MaLR 278 405 -45 2162 74 3 20 chr3 161987649 161987945 -56049213 + AluY SINE Alu 3 293 -18 274 176 40 14 chr3 161987945 161988019 -56049139 + GA-rich Low_complexity Low_complexity 2 77 0 1503 245 116 42 chr3 161988222 161989125 -56048033 + L1ME3A LINE L1 2644 3613 -2533 2044 281 72 26 chr3 161989134 161990000 -56047158 + L1ME3A LINE L1 4215 5145 -1001 1747 104 0 0 chr3 161990000 161990222 -56046936 + AluSg SINE Alu 1 222 -88 2044 281 72 26 chr3 161990222 161990474 -56046684 + L1ME3A LINE L1 5145 5384 -762 1336 138 5 0 chr3 161990475 161990670 -56046488 + AluSg/x SINE Alu 87 282 -30 236 183 22 29 chr3 161990683 161990820 -56046338 + (TA)n Simple_repeat Simple_repeat 2 137 0 379 101 7 68 chr3 161990883 161991031 -56046127 + (TA)n Simple_repeat Simple_repeat 2 140 0 1624 263 78 32 chr3 161991049 161991795 -56045363 + L1ME3A LINE L1 5386 6165 -5 26 64 0 0 chr3 161991795 161991842 -56045316 + AT_rich Low_complexity Low_complexity 1 47 0 21 36 0 0 chr3 161991984 161992012 -56045146 + AT_rich Low_complexity Low_complexity 1 28 0 233 274 11 11 chr3 161992758 161992853 -56044305 + T-rich Low_complexity Low_complexity 3 97 0 243 189 0 38 chr3 161993553 161993606 -56043552 + L2 LINE L2 3200 3250 -22 26 30 0 0 chr3 161993684 161993717 -56043441 + AT_rich Low_complexity Low_complexity 1 33 0 257 340 67 0 chr3 161993739 161993889 -56043269 + MIR SINE MIR 103 262 0 430 230 119 15 chr3 161995042 161995075 -56042083 + MIR SINE MIR 36 64 -182 2641 142 25 74 chr3 161995075 161995668 -56041490 + L1MB8 LINE L1 5614 6177 -1 430 230 119 15 chr3 161995668 161995767 -56041391 + MIR SINE MIR 64 182 -64 2026 141 3 3 chr3 161995812 161996124 -56041034 - AluSx SINE Alu 0 312 1 21 0 0 0 chr3 161996336 161996357 -56040801 + AT_rich Low_complexity Low_complexity 1 21 0 1894 205 42 14 chr3 161996428 161997394 -56039764 + L1ME1 LINE L1 4756 5798 -368 1131 123 118 0 chr3 161997398 161997593 -56039565 + MLT2D LTR ERVL 5 222 -192 3523 173 15 8 chr3 161997596 161998210 -56038948 + L1MA3 LINE L1 24 641 -6924 2373 93 0 0 chr3 161998210 161998511 -56038647 - AluSg SINE Alu -9 301 1 15384 169 35 11 chr3 161998512 162000965 -56036193 + L1MA3 LINE L1 813 3206 -4518 180 77 0 0 chr3 162000965 162000991 -56036167 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 15384 169 35 11 chr3 162000991 162005275 -56031883 + L1MA3 LINE L1 3206 7724 0 875 174 108 38 chr3 162005280 162005452 -56031706 + MLT2D LTR ERVL 188 379 -35 744 71 0 0 chr3 162005452 162005551 -56031607 + (TGGA)n Simple_repeat Simple_repeat 3 101 0 875 174 108 38 chr3 162005551 162005590 -56031568 + MLT2D LTR ERVL 379 414 0 371 186 53 4 chr3 162005590 162005709 -56031449 + L1ME1 LINE L1 5794 5921 -243 1123 218 44 94 chr3 162005711 162005779 -56031379 - MER2 DNA MER2_type 0 345 275 3591 127 31 3 chr3 162005779 162006362 -56030796 + L1PB1 LINE L1 5551 6149 -2 1123 218 44 94 chr3 162006362 162006656 -56030502 - MER2 DNA MER2_type -70 275 1 897 228 20 49 chr3 162006656 162006902 -56030256 + L1ME1 LINE L1 5919 6157 -9 692 270 108 63 chr3 162006930 162007309 -56029849 - MLT1J LTR MaLR -8 503 102 192 40 0 0 chr3 162007309 162007334 -56029824 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 692 270 108 63 chr3 162007334 162007369 -56029789 - MLT1J LTR MaLR -409 102 70 230 282 14 14 chr3 162007466 162007537 -56029621 + L2 LINE L2 3243 3313 0 26 0 0 0 chr3 162008034 162008060 -56029098 + AT_rich Low_complexity Low_complexity 1 26 0 188 256 188 94 chr3 162008298 162008415 -56028743 - MIR3 SINE MIR -11 197 70 207 0 0 0 chr3 162008836 162008859 -56028299 + (A)n Simple_repeat Simple_repeat 1 23 0 503 43 116 0 chr3 162009700 162009769 -56027389 + MADE1 DNA Mariner 4 80 0 680 273 34 11 chr3 162010127 162010303 -56026855 - MLT1K LTR MaLR -313 275 96 260 313 70 9 chr3 162010547 162010662 -56026496 - MIR3 SINE MIR -4 204 83 21 57 0 0 chr3 162012351 162012386 -56024772 + AT_rich Low_complexity Low_complexity 1 35 0 221 304 0 61 chr3 162013529 162013677 -56023481 + CT-rich Low_complexity Low_complexity 4 142 0 306 106 0 0 chr3 162015471 162015518 -56021640 + (T)n Simple_repeat Simple_repeat 1 47 0 22 0 0 0 chr3 162015878 162015900 -56021258 + AT_rich Low_complexity Low_complexity 1 22 0 1896 196 97 35 chr3 162016261 162016775 -56020383 + LTR10A LTR ERV1 2 547 -62 245 230 0 54 chr3 162017754 162017828 -56019330 - Charlie8 DNA MER1_type -2241 176 107 305 281 136 63 chr3 162018226 162018447 -56018711 - MER102b DNA MER1_type 0 341 105 221 254 68 0 chr3 162020338 162020397 -56016761 - MIR SINE MIR -14 248 186 364 357 0 0 chr3 162020548 162020660 -56016498 - MIR3 SINE MIR -9 199 88 420 240 0 40 chr3 162022992 162023092 -56014066 + MER5A DNA MER1_type 9 104 -85 233 250 50 38 chr3 162023631 162023711 -56013447 + MIR3 SINE MIR 117 197 -11 236 292 0 0 chr3 162025161 162025226 -56011932 + GA-rich Low_complexity Low_complexity 3 67 0 651 277 46 84 chr3 162025246 162025639 -56011519 + LTR16A LTR ERVL 1 378 -72 1437 38 0 43 chr3 162025714 162025898 -56011260 - AluY SINE Alu -15 296 121 189 0 0 0 chr3 162025928 162025949 -56011209 + (A)n Simple_repeat Simple_repeat 1 21 0 226 233 0 0 chr3 162025995 162026038 -56011120 + CT-rich Low_complexity Low_complexity 2 44 0 182 36 0 36 chr3 162026456 162026484 -56010674 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 228 313 47 0 chr3 162030397 162030461 -56006697 + L2 LINE L2 3145 3211 -61 225 301 30 30 chr3 162030701 162030867 -56006291 - L1ME4a LINE L1 -67 6054 5889 303 300 48 48 chr3 162031247 162031457 -56005701 - L1ME4a LINE L1 -390 5731 5522 5027 171 17 41 chr3 162032117 162032875 -56004283 - L1PA16 LINE L1 -2 6164 5389 2280 108 3 0 chr3 162032875 162033170 -56003988 - AluSc SINE Alu -13 296 1 5027 171 17 41 chr3 162033170 162034226 -56002932 - L1PA16 LINE L1 -777 5389 4397 985 283 63 37 chr3 162036901 162037283 -55999875 + MLT1J2 LTR MaLR 59 450 0 230 328 10 125 chr3 162037285 162037477 -55999681 + L2 LINE L2 2852 3021 -251 22 56 0 0 chr3 162038023 162038059 -55999099 + AT_rich Low_complexity Low_complexity 1 36 0 212 159 318 0 chr3 162038086 162038149 -55999009 + MIR SINE MIR 175 257 -5 290 95 24 36 chr3 162038491 162038575 -55998583 + (TTATA)n Simple_repeat Simple_repeat 4 86 0 215 330 35 69 chr3 162039583 162039786 -55997372 - L2 LINE L2 -182 3090 2895 1495 304 52 20 chr3 162041056 162041984 -55995174 + HERVL LTR ERVL 1759 2763 -2233 376 327 139 30 chr3 162044273 162044438 -55992720 + MER91A DNA MER1_type 2 184 -12 617 256 131 35 chr3 162044601 162044800 -55992358 + MIR SINE MIR 32 249 -13 198 71 0 0 chr3 162044823 162044851 -55992307 + (TGGA)n Simple_repeat Simple_repeat 3 30 0 294 194 0 0 chr3 162045572 162045639 -55991519 + (CA)n Simple_repeat Simple_repeat 1 67 0 472 256 31 70 chr3 162045958 162046087 -55991071 - L2 LINE L2 -8 3305 3182 243 0 0 0 chr3 162046128 162046155 -55991003 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1602 186 93 71 chr3 162046931 162047382 -55989776 - MLT1C LTR MaLR 0 467 7 849 231 167 67 chr3 162047626 162047998 -55989160 + MLT1H LTR MaLR 141 549 0 716 76 0 0 chr3 162048092 162048184 -55988974 - AluY SINE Alu -184 127 36 1067 73 0 0 chr3 162048184 162048320 -55988838 + AluSg/x SINE Alu 169 304 -8 2315 238 62 34 chr3 162048594 162049237 -55987921 - MLT2F LTR ERVL 0 663 3 523 217 98 76 chr3 162049237 162049317 -55987841 - ERVL-F LTR ERVL -7 5757 5680 2085 110 0 3 chr3 162049317 162049626 -55987532 - AluSx SINE Alu 0 308 1 523 217 98 76 chr3 162049626 162049727 -55987431 - ERVL-F LTR ERVL -84 5680 5570 23 54 0 0 chr3 162050819 162050856 -55986302 + AT_rich Low_complexity Low_complexity 1 37 0 432 277 170 0 chr3 162050860 162051001 -55986157 - MIR SINE MIR -97 165 1 228 306 119 22 chr3 162051026 162051212 -55985946 - MIR SINE MIR -42 220 19 419 267 61 8 chr3 162051489 162051620 -55985538 + MIR3 SINE MIR 12 149 -59 284 276 0 0 chr3 162052782 162052840 -55984318 - L2 LINE L2 -20 3293 3236 702 276 135 75 chr3 162053931 162054399 -55982759 - LTR33 LTR ERVL -1 520 25 227 237 66 13 chr3 162054609 162054685 -55982473 + L1ME3 LINE L1 5668 5747 -2061 285 79 0 0 chr3 162054690 162054728 -55982430 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 502 285 20 20 chr3 162054728 162054928 -55982230 + L1ME3 LINE L1 5740 5939 -231 352 291 68 68 chr3 162054959 162055196 -55981962 + L1ME3 LINE L1 5924 6160 -2 1731 37 0 9 chr3 162056134 162056348 -55980810 - L1PA3 LINE L1 -3 6152 5941 828 59 0 0 chr3 162056348 162056450 -55980708 + L1PA3 LINE L1 5849 5950 -205 208 273 0 45 chr3 162056484 162056550 -55980608 + L2 LINE L2 2886 2948 -365 259 255 102 70 chr3 162057323 162057480 -55979678 + MIR SINE MIR 33 194 -68 32 0 0 0 chr3 162057716 162057748 -55979410 + AT_rich Low_complexity Low_complexity 1 32 0 195 330 96 24 chr3 162057778 162057987 -55979171 + L2 LINE L2 1701 1924 -1390 1138 223 46 23 chr3 162058048 162058353 -55978805 + MER58B DNA MER1_type 22 333 -8 214 339 0 0 chr3 162058428 162058487 -55978671 + MIR SINE MIR 162 220 -42 269 350 198 16 chr3 162058511 162059026 -55978132 + L2 LINE L2 2067 2675 -639 528 245 41 27 chr3 162059165 162059312 -55977846 - L2 LINE L2 0 3313 3165 25 31 0 0 chr3 162059778 162059810 -55977348 + AT_rich Low_complexity Low_complexity 1 32 0 188 316 83 23 chr3 162060139 162060272 -55976886 + L3 LINE CR1 200 340 -1237 220 195 52 26 chr3 162062260 162062337 -55974821 + (TTTG)n Simple_repeat Simple_repeat 4 82 0 441 150 233 8 chr3 162062422 162062542 -55974616 - MIR SINE MIR -42 220 74 790 265 99 22 chr3 162063691 162064103 -55973055 - L1ME4a LINE L1 -40 6081 5638 229 213 0 33 chr3 162064126 162064187 -55972971 + L1MC4 LINE L1 6643 6701 -1341 226 243 89 112 chr3 162064219 162064433 -55972725 - L1ME4a LINE L1 -589 5532 5324 323 335 162 0 chr3 162064836 162065027 -55972131 - MIR SINE MIR -8 254 33 2083 109 3 33 chr3 162065273 162065576 -55971582 - AluSc SINE Alu -15 294 1 185 373 40 0 chr3 162065930 162066005 -55971153 + L2 LINE L2 3193 3270 -2 664 286 71 13 chr3 162066960 162067184 -55969974 + MIR SINE MIR 26 262 0 522 198 0 0 chr3 162067428 162067534 -55969624 - L1MB7 LINE L1 -5 6179 6074 19795 37 4 4 chr3 162067616 162070846 -55966312 - L1PA3 LINE L1 -3 6152 2920 181 161 161 32 chr3 162070849 162070911 -55966247 - L2 LINE L2 -61 3211 3142 28 48 0 0 chr3 162071114 162071156 -55966002 + AT_rich Low_complexity Low_complexity 1 42 0 275 136 0 34 chr3 162071311 162071370 -55965788 - L1MB8 LINE L1 -1 6177 6121 2299 166 15 0 chr3 162071370 162071762 -55965396 + MER57A LTR ERV1 6 403 0 3435 202 73 21 chr3 162071762 162073399 -55963759 - L1MB8 LINE L1 -54 6124 4413 203 0 37 0 chr3 162073400 162073427 -55963731 + (TTTTG)n Simple_repeat Simple_repeat 4 31 0 1897 125 0 62 chr3 162073437 162073742 -55963416 - AluSg SINE Alu -22 288 3 1926 230 35 2 chr3 162074111 162074602 -55962556 - L1MB8 LINE L1 -1761 4385 3879 239 197 33 0 chr3 162074619 162074680 -55962478 - L1MA4 LINE L1 -1 6299 6237 857 197 38 0 chr3 162074772 162074955 -55962203 - L1MA4 LINE L1 -42 6258 6069 * 1354 203 38 3 chr3 162074949 162075240 -55961918 - L1MB8 LINE L1 -2292 3854 3554 183 266 193 18 chr3 162077359 162077468 -55959690 + MIR3 SINE MIR 1 128 -80 2267 107 3 0 chr3 162079825 162080124 -55957034 - AluSx SINE Alu -12 300 1 21 71 0 0 chr3 162080701 162080743 -55956415 + AT_rich Low_complexity Low_complexity 1 42 0 489 304 135 0 chr3 162081106 162081254 -55955904 + MER5A DNA MER1_type 20 187 -2 702 277 72 20 chr3 162081326 162081575 -55955583 - MIR SINE MIR 0 262 1 342 138 62 12 chr3 162081812 162081892 -55955266 + L1MA10 LINE L1 6251 6334 0 1510 144 49 63 chr3 162081929 162082237 -55954921 + AluJb SINE Alu 3 306 0 45 34 0 0 chr3 162083537 162083596 -55953562 + AT_rich Low_complexity Low_complexity 1 59 0 765 261 138 41 chr3 162084470 162085007 -55952151 + L1MC4a LINE L1 5260 5848 -1960 256 268 14 0 chr3 162085081 162085152 -55952006 + (TATATG)n Simple_repeat Simple_repeat 3 74 0 846 174 103 31 chr3 162087786 162087981 -55949177 - MER3 DNA MER1_type 0 209 1 23 0 0 0 chr3 162088507 162088530 -55948628 + AT_rich Low_complexity Low_complexity 1 23 0 2421 118 95 3 chr3 162088573 162088963 -55948195 + MSTB LTR MaLR 1 426 0 22 35 0 0 chr3 162089546 162089575 -55947583 + AT_rich Low_complexity Low_complexity 1 29 0 216 97 0 0 chr3 162089576 162089607 -55947551 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 1664 186 3 14 chr3 162089609 162089899 -55947259 - AluJo SINE Alu -25 287 1 935 260 210 20 chr3 162091975 162092375 -55944783 - L2 LINE L2 -5 3308 2833 23 0 0 0 chr3 162093723 162093746 -55943412 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr3 162094815 162094836 -55942322 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 269 267 144 74 chr3 162095055 162095257 -55941901 - MIR SINE MIR 0 262 47 384 287 210 7 chr3 162097529 162097672 -55939486 - MER5A DNA MER1_type -1 188 17 194 0 39 0 chr3 162098105 162098131 -55939027 + (CA)n Simple_repeat Simple_repeat 2 28 0 240 376 30 0 chr3 162099167 162099268 -55937890 - MIR SINE MIR -111 151 48 4148 202 70 9 chr3 162099268 162100240 -55936918 + L1MEc LINE L1 35 1065 -5331 28 48 0 0 chr3 162101169 162101211 -55935947 + AT_rich Low_complexity Low_complexity 1 42 0 203 207 0 69 chr3 162101763 162101821 -55935337 + MIR3 SINE MIR 107 160 -48 385 304 96 47 chr3 162101824 162102146 -55935012 + MER102b DNA MER1_type 4 341 0 2160 90 0 11 chr3 162103352 162103630 -55933528 - AluSx SINE Alu -37 275 1 2337 92 0 0 chr3 162104062 162104354 -55932804 - AluSg SINE Alu -18 292 1 912 219 18 45 chr3 162105728 162105952 -55931206 - MER20 DNA MER1_type 0 219 2 351 252 185 0 chr3 162106050 162106169 -55930989 + MIR SINE MIR 109 249 -13 320 331 48 7 chr3 162108006 162108151 -55929007 - MIR SINE MIR -105 157 7 1165 160 11 0 chr3 162108514 162108701 -55928457 - MER5A DNA MER1_type 0 189 1 1166 179 80 7 chr3 162108746 162109048 -55928110 + MER33 DNA MER1_type 1 324 0 2878 3 0 0 chr3 162110582 162110891 -55926267 - AluYa5 SINE Alu -2 309 1 344 287 43 0 chr3 162110925 162111019 -55926139 - MIR SINE MIR -77 131 34 22 35 0 0 chr3 162112097 162112126 -55925032 + AT_rich Low_complexity Low_complexity 1 29 0 345 329 67 35 chr3 162113234 162113517 -55923641 + L1MEd LINE L1 635 926 -5193 425 309 32 73 chr3 162114377 162114611 -55922547 - MIR SINE MIR -11 251 19 266 322 153 8 chr3 162115369 162115487 -55921671 + L2 LINE L2 3138 3272 0 338 341 60 48 chr3 162116757 162116930 -55920228 - L2 LINE L2 -2 3270 3092 2146 137 0 0 chr3 162116930 162117229 -55919929 + AluSx SINE Alu 1 299 -13 338 341 60 48 chr3 162117229 162117304 -55919854 - L2 LINE L2 -180 3092 3019 25 31 0 0 chr3 162120821 162120853 -55916305 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr3 162120926 162120948 -55916210 + AT_rich Low_complexity Low_complexity 1 22 0 620 299 117 13 chr3 162121154 162121692 -55915466 - L1ME4a LINE L1 -3 6118 5525 1712 171 0 13 chr3 162121732 162122030 -55915128 - AluJo SINE Alu -18 294 1 38 0 0 0 chr3 162122402 162122440 -55914718 + AT_rich Low_complexity Low_complexity 1 38 0 264 59 0 0 chr3 162122644 162122678 -55914480 + (TTCTG)n Simple_repeat Simple_repeat 4 37 0 2131 110 4 4 chr3 162122687 162122968 -55914190 - AluSc SINE Alu -24 285 5 2244 85 7 3 chr3 162123614 162123934 -55913224 - AluSq SINE Alu 0 322 2 679 308 52 12 chr3 162127189 162127439 -55909719 - MIR SINE MIR -1 261 2 1240 117 0 0 chr3 162128411 162128582 -55908576 + AluSg/x SINE Alu 137 307 -5 956 185 5 24 chr3 162128599 162128804 -55908354 + MER20 DNA MER1_type 11 211 -8 234 0 0 0 chr3 162130116 162130142 -55907016 + (CA)n Simple_repeat Simple_repeat 2 27 0 1726 206 93 31 chr3 162131099 162131613 -55905545 - LTR10A LTR ERV1 -62 547 2 22 0 0 0 chr3 162131973 162131995 -55905163 + AT_rich Low_complexity Low_complexity 1 22 0 2521 33 0 13 chr3 162132246 162132546 -55904612 + AluY SINE Alu 1 296 -15 545 277 46 84 chr3 162132621 162133014 -55904144 - LTR16A LTR ERVL -72 378 1 233 269 0 0 chr3 162133034 162133086 -55904072 + CT-rich Low_complexity Low_complexity 1 52 0 231 250 50 38 chr3 162134550 162134630 -55902528 - MIR3 SINE MIR -11 197 117 426 240 0 40 chr3 162135169 162135269 -55901889 - MER5A DNA MER1_type -85 104 9 366 357 0 0 chr3 162137597 162137709 -55899449 + MIR3 SINE MIR 88 199 -9 221 254 68 0 chr3 162137860 162137919 -55899239 + MIR SINE MIR 186 248 -14 6834 68 2 2 chr3 162138493 162139716 -55897442 + L1P2 LINE L1 4406 5627 -527 266 322 153 8 chr3 162140087 162140205 -55896953 + L2 LINE L2 3138 3272 0 5468 46 4 7 chr3 162140256 162140945 -55896213 + L1PA5 LINE L1 5465 6151 -3 221 355 0 0 chr3 162141064 162141140 -55896018 - L2 LINE L2 -301 2971 2896 2848 118 128 0 chr3 162141219 162141720 -55895438 - MER34B LTR ERV1 0 565 1 3774 211 49 31 chr3 162141720 162141937 -55895221 - MER34B-int LTR ERV1 0 6331 6119 261 0 0 0 chr3 162141937 162141966 -55895192 + (AACTG)n Simple_repeat Simple_repeat 2 30 0 3774 211 49 31 chr3 162141966 162142976 -55894182 - MER34B-int LTR ERV1 -212 6119 3813 1501 179 27 19 chr3 162142985 162143248 -55893910 - AluJo SINE Alu -47 265 1 543 177 69 155 chr3 162143248 162143525 -55893633 - MER31-int LTR ERV1 -1985 2951 2787 2249 110 0 0 chr3 162143530 162143829 -55893329 + AluSg SINE Alu 1 299 -11 312 319 0 0 chr3 162145110 162145276 -55891882 + C-rich Low_complexity Low_complexity 1 166 0 1734 238 46 10 chr3 162145670 162146187 -55890971 + L1MB8 LINE L1 5643 6178 0 211 333 0 0 chr3 162146396 162146447 -55890711 - L2 LINE L2 -6 3266 3216 200 222 16 48 chr3 162146987 162147050 -55890108 + MIR SINE MIR 191 251 -11 2276 101 10 0 chr3 162147347 162147645 -55889513 + AluSp SINE Alu 1 301 -12 1655 176 32 11 chr3 162147994 162148431 -55888727 + L1 LINE L1 1670 2115 -4734 * 2388 236 26 20 chr3 162148428 162149167 -55887991 + L1 LINE L1 4382 5124 -1724 21 0 0 0 chr3 162149307 162149328 -55887830 + AT_rich Low_complexity Low_complexity 1 21 0 345 356 43 25 chr3 162149658 162149821 -55887337 + MIR SINE MIR 19 184 -78 368 309 20 20 chr3 162150751 162150903 -55886255 + L1MEc LINE L1 1562 1713 -4683 2670 168 8 9 chr3 162150905 162151653 -55885505 + L1PA16 LINE L1 5007 5754 -551 1396 143 12 20 chr3 162151757 162152008 -55885150 + L1PA16 LINE L1 5914 6162 -4 1818 115 53 36 chr3 162152040 162152344 -55884814 + AluSc SINE Alu 1 309 0 462 18 0 0 chr3 162152712 162152767 -55884391 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 225 211 0 0 chr3 162152918 162152975 -55884183 + (CCAA)n Simple_repeat Simple_repeat 4 60 0 7938 153 20 11 chr3 162153401 162154860 -55882298 - Tigger1 DNA MER2_type -765 1653 182 315 0 0 0 chr3 162155478 162155513 -55881645 + (A)n Simple_repeat Simple_repeat 1 35 0 2590 52 0 0 chr3 162156254 162156560 -55880598 + AluY SINE Alu 1 306 -5 727 289 53 44 chr3 162156663 162157023 -55880135 + MLT1J LTR MaLR 146 508 -3 236 329 61 79 chr3 162157084 162157248 -55879910 + MIR SINE MIR 3 113 -95 766 237 68 6 chr3 162159294 162159471 -55877687 - MER5A DNA MER1_type -1 188 1 22 0 0 0 chr3 162159756 162159778 -55877380 + AT_rich Low_complexity Low_complexity 1 22 0 25 83 0 0 chr3 162159821 162159881 -55877277 + AT_rich Low_complexity Low_complexity 1 60 0 2197 117 3 0 chr3 162160363 162160662 -55876496 + AluSx SINE Alu 1 300 -12 23 33 0 0 chr3 162160886 162160916 -55876242 + AT_rich Low_complexity Low_complexity 1 30 0 2305 104 0 3 chr3 162161001 162161309 -55875849 - AluSq SINE Alu -6 307 1 472 280 19 0 chr3 162161530 162161637 -55875521 + MER81 DNA DNA 3 111 -3 513 345 5 24 chr3 162161777 162161983 -55875175 - MIR SINE MIR -44 218 17 277 214 12 60 chr3 162161991 162162075 -55875083 + MER5A DNA MER1_type 25 104 -85 21 71 0 0 chr3 162163113 162163155 -55874003 + AT_rich Low_complexity Low_complexity 1 42 0 273 265 111 58 chr3 162163235 162163424 -55873734 - MIR SINE MIR -54 208 10 2558 49 0 3 chr3 162163464 162163769 -55873389 + AluY SINE Alu 2 305 -6 2211 118 0 0 chr3 162164867 162165164 -55871994 + AluSx SINE Alu 1 297 -15 852 218 181 49 chr3 162165608 162165891 -55871267 + HsTC2 DNA Tc2 517 761 -1137 2110 97 4 4 chr3 162165891 162166170 -55870988 + AluY SINE Alu 1 279 -32 207 0 0 0 chr3 162166171 162166194 -55870964 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 852 218 181 49 chr3 162166194 162166256 -55870902 + HsTC2 DNA Tc2 760 910 -988 822 181 124 5 chr3 162166257 162166467 -55870691 - L1MC1 LINE L1 -6 6327 6093 925 225 159 33 chr3 162166468 162167172 -55869986 + HsTC2 DNA Tc2 899 1895 -3 274 294 25 34 chr3 162167375 162167494 -55869664 - MLT2E LTR ERVL -476 152 35 337 250 9 17 chr3 162167662 162167778 -55869380 + MLT1H LTR MaLR 59 173 -376 344 267 46 8 chr3 162168746 162168877 -55868281 + L1ME LINE L1 5564 5699 -422 21 36 0 0 chr3 162169985 162170013 -55867145 + AT_rich Low_complexity Low_complexity 1 28 0 351 248 125 85 chr3 162170160 162170275 -55866883 + L1MDa LINE L1 1141 1250 -1257 2272 117 0 0 chr3 162170275 162170583 -55866575 + AluSx SINE Alu 1 308 -4 351 248 125 85 chr3 162170583 162170806 -55866352 + L1MDa LINE L1 1250 1460 -1047 321 298 44 22 chr3 162170870 162171051 -55866107 + HAL1 LINE L1 1482 1666 -841 40 21 0 0 chr3 162171269 162171316 -55865842 + AT_rich Low_complexity Low_complexity 1 47 0 233 261 87 0 chr3 162171379 162171448 -55865710 + MER5C DNA MER1_type 1 75 -249 2305 98 0 16 chr3 162171697 162172012 -55865146 + AluSg SINE Alu 1 310 0 644 276 94 46 chr3 162172132 162172234 -55864924 + L1MDa LINE L1 2226 2322 -3824 1843 171 47 0 chr3 162172234 162172532 -55864626 + AluJb SINE Alu 1 312 0 644 276 94 46 chr3 162172532 162173255 -55863903 + L1MDa LINE L1 2322 3113 -3033 1742 171 48 3 chr3 162173255 162173548 -55863610 + AluJb SINE Alu 1 306 -6 644 276 94 46 chr3 162173548 162173751 -55863407 + L1MDa LINE L1 3113 3305 -2841 713 245 8 60 chr3 162173751 162174016 -55863142 + L1MEc LINE L1 9 259 -6137 678 282 98 21 chr3 162174033 162174419 -55862739 + L1ME3A LINE L1 5532 5947 -223 1531 217 60 40 chr3 162174465 162174916 -55862242 + L1MD1 LINE L1 6 465 -6075 3029 213 86 20 chr3 162174933 162175882 -55861276 + L1MD1 LINE L1 4069 5080 -1460 1671 278 83 39 chr3 162175902 162176626 -55860532 + L1 LINE L1 579 1334 -5127 * 6136 186 19 14 chr3 162176619 162176830 -55860328 + L1 LINE L1 3821 4029 -1941 2188 135 0 0 chr3 162176830 162177134 -55860024 - AluSx SINE Alu -8 304 1 6136 186 19 14 chr3 162177134 162178322 -55858836 + L1 LINE L1 4029 5227 -743 268 284 27 0 chr3 162178359 162178433 -55858725 + MER21B LTR ERV1 13 88 -775 2663 213 97 21 chr3 162178561 162178928 -55858230 + MER21B LTR ERV1 98 436 -427 2679 191 4 6 chr3 162178928 162179415 -55857743 - MER66B LTR ERV1 0 486 1 2663 213 97 21 chr3 162179415 162179756 -55857402 + MER21B LTR ERV1 436 860 -3 4142 130 59 1 chr3 162179758 162180473 -55856685 + L1MB1 LINE L1 5413 6168 0 3002 176 37 2 chr3 162180480 162181078 -55856080 + L1MD1 LINE L1 6010 6628 -8 499 307 101 28 chr3 162181358 162181748 -55855410 + MLT1J2 LTR MaLR 23 401 -8 1478 159 25 4 chr3 162182143 162182388 -55854770 + AluJb SINE Alu 39 288 -24 455 155 9 86 chr3 162182575 162182691 -55854467 - MLT2B1 LTR ERVL 0 520 414 2491 193 14 18 chr3 162182776 162183249 -55853909 + MLT2B2 LTR ERVL 1 473 -42 384 77 0 0 chr3 162183249 162183301 -55853857 + (TCCA)n Simple_repeat Simple_repeat 1 52 0 2491 193 14 18 chr3 162183301 162183336 -55853822 + MLT2B2 LTR ERVL 473 507 -8 311 259 0 24 chr3 162183501 162183586 -55853572 + MLT1F LTR MaLR 1 83 -459 326 317 129 52 chr3 162183713 162184000 -55853158 - L3 LINE CR1 -155 1422 1114 1997 160 28 69 chr3 162185241 162185673 -55851485 - MLT2D LTR ERVL 0 414 1 2217 115 10 3 chr3 162185721 162186017 -55851141 + AluSq SINE Alu 1 298 -15 198 0 0 0 chr3 162186017 162186039 -55851119 + (TA)n Simple_repeat Simple_repeat 2 23 0 339 296 136 44 chr3 162187011 162187305 -55849853 - HAL1 LINE L1 -1296 1211 891 270 0 0 0 chr3 162189932 162189962 -55847196 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1861 157 30 60 chr3 162190241 162190643 -55846515 + MLT1B LTR MaLR 1 390 0 323 191 15 15 chr3 162191589 162191657 -55845501 - L1MC/D LINE L1 -2126 5682 5615 1443 269 46 20 chr3 162191720 162192453 -55844705 - L2 LINE L2 -40 3273 2523 779 300 40 6 chr3 162192455 162192778 -55844380 - L1MC/D LINE L1 -2216 5592 5259 412 297 223 0 chr3 162193876 162194051 -55843107 + MIR SINE MIR 28 241 -21 357 271 40 91 chr3 162194285 162194484 -55842674 - MER91B DNA MER1_type 0 190 2 267 207 12 49 chr3 162195325 162195407 -55841751 + GA-rich Low_complexity Low_complexity 4 82 0 644 216 80 0 chr3 162195680 162195842 -55841316 - MER96 DNA MER1_type 0 175 1 1716 190 33 3 chr3 162196116 162196416 -55840742 + AluJo SINE Alu 2 310 -2 373 304 178 21 chr3 162197259 162197450 -55839708 - MIR SINE MIR -31 231 11 191 401 21 7 chr3 162197557 162197699 -55839459 - MIR3 SINE MIR -8 200 57 1230 216 83 0 chr3 162197755 162198009 -55839149 + AluJo SINE Alu 1 275 -37 27 49 0 0 chr3 162198013 162198054 -55839104 + AT_rich Low_complexity Low_complexity 1 41 0 1727 161 0 62 chr3 162198733 162199056 -55838102 + AluJo SINE Alu 3 305 -7 196 270 0 63 chr3 162199295 162199358 -55837800 + MER5A DNA MER1_type 57 115 -74 21 36 0 0 chr3 162200089 162200117 -55837041 + AT_rich Low_complexity Low_complexity 1 28 0 1834 151 0 3 chr3 162200338 162200623 -55836535 + AluJb SINE Alu 1 284 -28 917 257 38 32 chr3 162201716 162202058 -55835100 + L2 LINE L2 2811 3154 -159 418 210 113 0 chr3 162202089 162202213 -55834945 - L1MA4 LINE L1 -6 6294 6157 231 337 20 0 chr3 162202248 162202349 -55834809 - MER5B DNA MER1_type -75 103 1 24 53 0 0 chr3 162202601 162202639 -55834519 + AT_rich Low_complexity Low_complexity 1 38 0 1517 124 0 0 chr3 162203641 162203851 -55833307 + AluSg/x SINE Alu 103 312 0 2072 120 10 10 chr3 162204323 162204624 -55832534 - AluSx SINE Alu -11 301 1 402 232 71 19 chr3 162205596 162205751 -55831407 + MER113 DNA MER1_type? 1 163 -358 2206 72 0 31 chr3 162205766 162206093 -55831065 - AluY SINE Alu 0 318 1 512 264 150 70 chr3 162207369 162207755 -55829403 - MER90 LTR ERV1 -104 510 94 327 49 0 0 chr3 162208038 162208079 -55829079 + (TG)n Simple_repeat Simple_repeat 2 42 0 2345 150 8 8 chr3 162208079 162208466 -55828692 - MLT1B LTR MaLR -3 387 1 591 239 39 28 chr3 162208468 162208648 -55828510 - L1ME LINE L1 -419 5702 5521 367 98 0 196 chr3 162209009 162209121 -55828037 - MLT1K LTR MaLR -6 582 493 212 277 0 0 chr3 162209348 162209395 -55827763 - MIR3 SINE MIR -12 196 150 31 26 0 0 chr3 162210259 162210297 -55826861 + AT_rich Low_complexity Low_complexity 1 38 0 231 344 148 8 chr3 162211119 162211241 -55825917 + L2 LINE L2 3115 3253 -19 189 0 0 0 chr3 162211631 162211652 -55825506 + (T)n Simple_repeat Simple_repeat 1 21 0 817 292 146 21 chr3 162212405 162212789 -55824369 + L2 LINE L2 2826 3257 -56 1170 199 131 51 chr3 162213382 162213733 -55823425 - MLT1B LTR MaLR -11 379 1 551 283 40 32 chr3 162213756 162214003 -55823155 - Charlie8 DNA MER1_type -2157 260 12 732 300 46 4 chr3 162214316 162214556 -55822602 + L3b LINE CR1 1113 1362 -221 205 338 14 0 chr3 162214782 162214856 -55822302 - MIR SINE MIR -119 143 69 2084 98 26 26 chr3 162215000 162215306 -55821852 + AluSx SINE Alu 1 306 -6 2443 99 30 51 chr3 162215894 162216266 -55820892 - THE1B LTR MaLR 0 364 1 228 313 51 29 chr3 162216724 162216923 -55820235 + MIR SINE MIR 34 260 -2 644 255 62 118 chr3 162218883 162219385 -55817773 - L2 LINE L2 -4 3309 2836 414 0 0 0 chr3 162219956 162220002 -55817156 + (CA)n Simple_repeat Simple_repeat 1 46 0 577 243 97 24 chr3 162221313 162221508 -55815650 - Charlie8 DNA MER1_type -2197 220 4 863 191 199 13 chr3 162221778 162222009 -55815149 + ORSL DNA AcHobo 1 274 -1 990 259 40 0 chr3 162222138 162222366 -55814792 + MIR SINE MIR 23 259 -3 1696 120 3 129 chr3 162222675 162223016 -55814142 + AluSx SINE Alu 1 298 -14 190 284 54 27 chr3 162223273 162223347 -55813811 - MIR SINE MIR -60 148 73 2430 76 3 16 chr3 162223544 162223859 -55813299 + AluSp SINE Alu 1 311 -2 1329 197 9 38 chr3 162223891 162224206 -55812952 - AluJo SINE Alu -6 306 1 270 0 0 0 chr3 162226703 162226733 -55810425 + (TC)n Simple_repeat Simple_repeat 1 30 0 202 400 100 0 chr3 162228176 162228306 -55808852 - L3 LINE CR1 -5 1572 1430 458 257 120 46 chr3 162228362 162228711 -55808447 + L1ME1 LINE L1 5257 5697 -2111 194 254 113 0 chr3 162228875 162228946 -55808212 + L3 LINE CR1 1498 1576 -1 185 222 0 22 chr3 162229033 162229078 -55808080 - MIR SINE MIR -50 212 169 265 277 34 19 chr3 162229190 162229305 -55807853 - MIR SINE MIR -24 184 70 378 299 42 14 chr3 162229858 162230002 -55807156 - MIR SINE MIR -18 244 97 378 0 0 0 chr3 162230331 162230373 -55806785 + (TA)n Simple_repeat Simple_repeat 1 42 0 * 612 27 0 0 chr3 162230372 162230446 -55806712 + (GA)n Simple_repeat Simple_repeat 2 75 0 2068 91 4 0 chr3 162230468 162230744 -55806414 + AluSx SINE Alu 26 302 -10 6406 181 31 29 chr3 162232513 162233167 -55803991 - L1MC1 LINE L1 0 6333 5682 2303 132 73 9 chr3 162233167 162233509 -55803649 + THE1B LTR MaLR 1 364 0 6406 181 31 29 chr3 162233509 162234666 -55802492 - L1MC1 LINE L1 -651 5682 4510 1746 194 70 17 chr3 162234666 162235011 -55802147 + MLT1A1 LTR MaLR 3 365 0 6406 181 31 29 chr3 162235011 162235564 -55801594 - L1MC1 LINE L1 -1823 4510 3960 622 233 10 64 chr3 162235567 162235769 -55801389 - L1MC4a LINE L1 -1917 5891 5701 * 1610 222 84 22 chr3 162235767 162236183 -55800975 + L1ME1 LINE L1 5739 6334 0 1256 189 68 47 chr3 162236387 162236683 -55800475 - AluJo SINE Alu -10 302 1 425 302 139 0 chr3 162237424 162237596 -55799562 + MIR SINE MIR 11 206 -56 2208 97 7 3 chr3 162237849 162238138 -55799020 + AluSc SINE Alu 1 290 -19 4172 183 44 45 chr3 162238146 162238235 -55798923 + L1MB4 LINE L1 4460 4548 -1632 2287 108 0 3 chr3 162238235 162238532 -55798626 + AluSx SINE Alu 1 296 -16 4172 183 44 45 chr3 162238532 162238717 -55798441 + L1MB4 LINE L1 4548 4732 -1448 1842 110 70 33 chr3 162238717 162239018 -55798140 - AluSx SINE Alu 0 312 1 4172 183 44 45 chr3 162239018 162240111 -55797047 + L1MB4 LINE L1 4732 5830 -350 239 260 0 31 chr3 162243568 162243664 -55793494 + (CCCCG)n Simple_repeat Simple_repeat 5 97 0 * 242 203 0 17 chr3 162243609 162243668 -55793490 + (CCCG)n Simple_repeat Simple_repeat 2 59 0 2126 119 17 0 chr3 162243685 162243979 -55793179 - AluSx SINE Alu -13 299 1 1532 161 71 45 chr3 162243979 162244332 -55792826 + L1MB8 LINE L1 5817 6178 0 211 277 289 12 chr3 162245075 162245158 -55792000 + MER5A DNA MER1_type 77 182 -7 23 0 0 0 chr3 162245983 162246006 -55791152 + AT_rich Low_complexity Low_complexity 1 23 0 456 128 0 0 chr3 162246053 162246131 -55791027 + HSMAR2 DNA Mariner 9 86 -1216 379 234 21 21 chr3 162246131 162246225 -55790933 - MER5A DNA MER1_type -70 119 26 236 352 28 0 chr3 162246640 162246711 -55790447 + MIR SINE MIR 29 101 -161 786 109 0 0 chr3 162246711 162246812 -55790346 + AluSq/x SINE Alu 33 133 -180 301 156 111 56 chr3 162246826 162246916 -55790242 + MIR SINE MIR 97 191 -71 27 0 0 0 chr3 162248047 162248074 -55789084 + GC_rich Low_complexity Low_complexity 1 27 0 257 200 0 67 chr3 162249363 162249423 -55787735 - L2 LINE L2 -245 3068 3013 639 108 0 0 chr3 162249498 162249581 -55787577 + FRAM SINE Alu 70 152 -24 2020 108 0 87 chr3 162250831 162251164 -55785994 + AluSx SINE Alu 1 304 -8 261 0 0 0 chr3 162252987 162253016 -55784142 + (TG)n Simple_repeat Simple_repeat 2 30 0 1286 199 14 5 chr3 162254228 162254444 -55782714 + MER20 DNA MER1_type 2 219 0 44 63 0 0 chr3 162255613 162255692 -55781466 + AT_rich Low_complexity Low_complexity 1 79 0 223 250 56 28 chr3 162257541 162257613 -55779545 - L2 LINE L2 0 3272 3199 204 265 41 0 chr3 162257861 162257910 -55779248 - MIR3 SINE MIR -43 165 115 1989 146 0 13 chr3 162258674 162258975 -55778183 + AluSq SINE Alu 3 299 -14 185 350 60 0 chr3 162260360 162260460 -55776698 - L2 LINE L2 -469 2845 2740 553 149 19 19 chr3 162260736 162260843 -55776315 - MER5A DNA MER1_type -81 108 2 230 267 50 17 chr3 162262550 162262670 -55774488 - L1ME LINE L1 -287 5834 5711 314 351 90 0 chr3 162262685 162262796 -55774362 - L2 LINE L2 -3 3269 3149 2395 199 69 43 chr3 162262829 162263158 -55774000 - L1MD2 LINE L1 -1 6358 6039 2337 96 0 0 chr3 162263158 162263461 -55773697 - AluSg SINE Alu -7 303 1 2395 199 69 43 chr3 162263461 162263779 -55773379 - L1MD2 LINE L1 -320 6039 5694 1868 174 5 42 chr3 162264033 162264412 -55772746 - MLT1A1 LTR MaLR 0 365 1 634 291 69 59 chr3 162265380 162265885 -55771273 + L2 LINE L2 2804 3313 0 2192 117 0 3 chr3 162265956 162266255 -55770903 + AluSx SINE Alu 1 298 -14 238 244 150 69 chr3 162266754 162266914 -55770244 + MIR SINE MIR 15 187 -75 334 274 264 10 chr3 162266941 162267138 -55770020 + MIR SINE MIR 14 260 -2 648 277 101 0 chr3 162267160 162267348 -55769810 + MIR SINE MIR 8 214 -48 2266 113 3 0 chr3 162267405 162267707 -55769451 - AluSx SINE Alu -9 303 1 1857 146 35 14 chr3 162269910 162270077 -55767081 - AluJb SINE Alu -18 294 117 315 0 0 0 chr3 162270077 162270112 -55767046 + (TG)n Simple_repeat Simple_repeat 2 36 0 1857 146 35 14 chr3 162270112 162270232 -55766926 - AluJb SINE Alu -195 117 1 244 125 0 0 chr3 162271577 162271617 -55765541 + Alu SINE Alu 37 76 -57 244 125 0 0 chr3 162271628 162271668 -55765490 + Alu SINE Alu 37 76 -57 1748 105 0 77 chr3 162271679 162271964 -55765194 + AluSx SINE Alu 37 299 -13 475 297 52 7 chr3 162271977 162272132 -55765026 + Charlie8 DNA MER1_type 1 162 -2255 2772 245 75 53 chr3 162272148 162273060 -55764098 - L2 LINE L2 -846 2468 1531 2511 55 6 10 chr3 162273060 162273372 -55763786 + AluY SINE Alu 1 311 0 2772 245 75 53 chr3 162273372 162273448 -55763710 - L2 LINE L2 -1783 1531 1458 2068 113 3 55 chr3 162274664 162274993 -55762165 - AluSx SINE Alu 0 312 1 1543 150 54 73 chr3 162275861 162276174 -55760984 + AluJb SINE Alu 1 307 -5 588 231 8 30 chr3 162277470 162277604 -55759554 + MIR SINE MIR 1 131 -131 375 278 68 15 chr3 162278611 162278744 -55758414 + MIR SINE MIR 2 141 -121 394 224 68 114 chr3 162279419 162279564 -55757594 - L1ME3A LINE L1 -104 6066 5941 2303 97 7 10 chr3 162279564 162279874 -55757284 - AluSc SINE Alu 0 309 1 394 224 68 114 chr3 162279874 162280036 -55757122 - L1ME3A LINE L1 -229 5941 5773 239 221 58 47 chr3 162280284 162280370 -55756788 - MLT1I LTR MaLR -243 166 80 649 250 20 31 chr3 162280433 162280629 -55756529 - L1ME3A LINE L1 -421 5749 5556 969 151 147 27 chr3 162280821 162281046 -55756112 + AluJo SINE Alu 41 292 -20 2324 135 9 0 chr3 162282236 162282570 -55754588 - MER1B DNA MER1_type 0 337 1 256 259 35 0 chr3 162282573 162282631 -55754527 + MIR SINE MIR 203 262 0 319 248 37 46 chr3 162282691 162282800 -55754358 - MIR SINE MIR -108 154 47 266 329 56 25 chr3 162285029 162285190 -55751968 + L3 LINE CR1 624 789 -788 205 240 20 20 chr3 162285512 162285562 -55751596 - L2 LINE L2 -7 3265 3216 2317 84 7 26 chr3 162285786 162286096 -55751062 - AluSc SINE Alu -4 305 2 22 35 0 0 chr3 162287216 162287245 -55749913 + AT_rich Low_complexity Low_complexity 1 29 0 29 28 0 0 chr3 162287406 162287442 -55749716 + AT_rich Low_complexity Low_complexity 1 36 0 201 171 0 0 chr3 162288229 162288264 -55748894 + A-rich Low_complexity Low_complexity 1 35 0 234 204 41 0 chr3 162288366 162288415 -55748743 - L3 LINE CR1 -15 1562 1512 286 27 0 0 chr3 162289539 162289576 -55747582 - MADE1 DNA Mariner -42 38 2 2465 56 16 3 chr3 162289762 162290066 -55747092 + AluY SINE Alu 1 308 -3 910 299 131 40 chr3 162290330 162291188 -55745970 + L1MC4a LINE L1 4463 5398 -748 336 315 237 0 chr3 162291302 162291452 -55745706 + L1MC4a LINE L1 5618 5731 -2077 1311 100 96 13 chr3 162291452 162291682 -55745476 + L1MB3 LINE L1 5935 6183 0 336 315 237 0 chr3 162291682 162291763 -55745395 + L1MC4a LINE L1 5731 5904 -1904 180 279 25 63 chr3 162292274 162292353 -55744805 + L2 LINE L2 3238 3313 0 1801 36 9 5 chr3 162292543 162292765 -55744393 + AluY SINE Alu 86 308 -3 2557 49 0 0 chr3 162292935 162293239 -55743919 + AluY SINE Alu 1 304 -7 2116 138 14 3 chr3 162295678 162296034 -55741124 + MER46B DNA MER2_type 2 236 0 254 286 65 52 chr3 162296497 162296651 -55740507 + MIR SINE MIR 63 218 -44 358 282 70 33 chr3 162297320 162297533 -55739625 - L2 LINE L2 -182 3090 2870 572 211 112 0 chr3 162297748 162297900 -55739258 - L1MC4 LINE L1 -615 7427 7259 26 50 0 0 chr3 162297900 162297940 -55739218 + AT_rich Low_complexity Low_complexity 1 40 0 360 77 0 0 chr3 162297940 162297992 -55739166 + (GA)n Simple_repeat Simple_repeat 2 53 0 1808 231 89 20 chr3 162298465 162299071 -55738087 - L1MC4 LINE L1 -140 7902 7255 38614 73 7 2 chr3 162299072 162305194 -55731964 + L1PA7 LINE L1 1 6150 -4 22 0 0 0 chr3 162305606 162305628 -55731530 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 162306462 162306483 -55730675 + AT_rich Low_complexity Low_complexity 1 21 0 311 279 30 61 chr3 162308530 162308695 -55728463 - L2 LINE L2 -2 3311 3152 5082 67 0 0 chr3 162308729 162309418 -55727740 - L1P LINE L1 -4197 1949 1261 550 260 70 45 chr3 162309422 162309622 -55727536 - L2 LINE L2 -174 3139 2935 386 364 17 11 chr3 162309793 162309969 -55727189 - MIR3 SINE MIR -14 194 18 406 305 40 40 chr3 162310007 162310181 -55726977 - L2 LINE L2 -522 2792 2619 228 122 0 0 chr3 162310213 162310254 -55726904 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 3978 230 109 19 chr3 162310383 162311484 -55725674 + L1MDa LINE L1 36 1235 -5305 1806 196 11 3 chr3 162311485 162311838 -55725320 + MLT1A1 LTR MaLR 10 365 0 2810 182 35 46 chr3 162311844 162312422 -55724736 + L1MDa LINE L1 1237 1805 -4735 303 135 0 0 chr3 162312422 162312474 -55724684 + L1PA11 LINE L1 6123 6174 0 2810 182 35 46 chr3 162312474 162312703 -55724455 + L1MDa LINE L1 1805 2035 -4505 678 213 29 71 chr3 162312705 162312945 -55724213 - MLT1D LTR MaLR -275 230 1 2636 204 43 99 chr3 162312945 162313663 -55723495 + L1MDa LINE L1 2543 3300 -3240 682 195 125 115 chr3 162313663 162314047 -55723111 + MLT1B LTR MaLR 1 388 -2 2636 204 43 99 chr3 162314047 162314097 -55723061 + L1MDa LINE L1 3300 3351 -3189 1760 166 9 31 chr3 162314097 162314447 -55722711 - MER2 DNA MER2_type -1 343 2 2636 204 43 99 chr3 162314447 162314749 -55722409 + L1MDa LINE L1 3351 3554 -2986 499 302 73 9 chr3 162315930 162316156 -55721002 + MIR SINE MIR 10 258 -4 208 203 40 40 chr3 162316438 162316512 -55720646 - MIR SINE MIR -80 182 109 669 304 80 0 chr3 162316642 162316843 -55720315 - MIR SINE MIR -2 260 44 187 333 115 13 chr3 162316972 162317050 -55720108 - MIR SINE MIR -92 116 31 246 221 58 47 chr3 162317061 162317147 -55720011 - L2 LINE L2 -18 3295 3209 202 222 16 48 chr3 162318043 162318106 -55719052 + MIR SINE MIR 191 251 -11 2422 92 0 0 chr3 162318403 162318707 -55718451 + AluSc SINE Alu 1 304 -5 1655 193 8 57 chr3 162318806 162319190 -55717968 + MLT1A1 LTR MaLR 1 365 0 2715 147 21 126 chr3 162319246 162319865 -55717293 + MLT2B3 LTR ERVL 1 554 0 242 268 21 10 chr3 162321430 162321527 -55715631 - L1ME4a LINE L1 -92 6029 5932 318 356 9 0 chr3 162321607 162321722 -55715436 - L1ME4a LINE L1 -1986 5822 5707 2129 221 94 17 chr3 162322718 162322888 -55714270 + L1MC4 LINE L1 6450 6606 -1282 186 103 0 0 chr3 162322888 162322917 -55714241 + (TATATG)n Simple_repeat Simple_repeat 5 33 0 2129 221 94 17 chr3 162322917 162323450 -55713708 + L1MC4 LINE L1 6606 7275 -613 40932 68 5 2 chr3 162323452 162329589 -55707569 - L1PA5 LINE L1 0 6154 1 2019 230 88 19 chr3 162329590 162330207 -55706951 + L1MC4 LINE L1 7255 7913 -129 360 77 0 0 chr3 162330669 162330721 -55706437 + (TC)n Simple_repeat Simple_repeat 2 53 0 26 50 0 0 chr3 162330721 162330761 -55706397 + AT_rich Low_complexity Low_complexity 1 40 0 619 211 112 0 chr3 162330761 162330913 -55706245 + L1MC4 LINE L1 7259 7427 -615 353 293 56 28 chr3 162331128 162331343 -55705815 + L2 LINE L2 2870 3090 -182 248 286 65 52 chr3 162332012 162332166 -55704992 - MIR SINE MIR -44 218 63 2164 135 14 3 chr3 162332629 162332985 -55704173 - MER46B DNA MER2_type 0 236 2 856 138 0 0 chr3 162336178 162336301 -55700857 + AluSx SINE Alu 2 124 -188 297 167 0 0 chr3 162336301 162336355 -55700803 + (TA)n Simple_repeat Simple_repeat 1 54 0 1062 155 0 0 chr3 162336356 162336553 -55700605 + AluSx SINE Alu 125 321 0 1849 161 0 20 chr3 162336706 162337004 -55700154 + AluJo SINE Alu 2 293 -19 1378 220 135 2 chr3 162337415 162337829 -55699329 - Charlie4a DNA MER1_type -1 507 39 218 152 43 0 chr3 162338027 162338073 -55699085 + CT-rich Low_complexity Low_complexity 1 48 0 2194 84 0 11 chr3 162338619 162338937 -55698221 + AluSg SINE Alu 1 315 0 2237 104 0 10 chr3 162339032 162339340 -55697818 + AluSx SINE Alu 1 305 -7 523 284 98 11 chr3 162339881 162340064 -55697094 + MIR SINE MIR 51 249 -13 183 80 0 0 chr3 162341833 162341858 -55695300 + (A)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr3 162341951 162341974 -55695184 + AT_rich Low_complexity Low_complexity 1 23 0 228 243 27 27 chr3 162342031 162342105 -55695053 + L2 LINE L2 3232 3305 -8 1878 243 46 11 chr3 162342835 162343391 -55693767 + L1MB8 LINE L1 5599 6178 0 229 350 88 0 chr3 162343602 162343682 -55693476 - L2 LINE L2 -6 3266 3180 216 0 0 0 chr3 162343709 162343733 -55693425 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 182 268 49 63 chr3 162343887 162344029 -55693129 + L2 LINE L2 1329 1468 -1846 333 224 26 13 chr3 162344347 162344423 -55692735 + MLT1-int LTR MaLR 1255 1331 -40 216 186 51 17 chr3 162344427 162344486 -55692672 + L2 LINE L2 2257 2317 -997 477 257 22 0 chr3 162344516 162344652 -55692506 - MER104 DNA Tc2 -3 177 39 7183 38 9 5 chr3 162344655 162345662 -55691496 + L1PA5 LINE L1 5141 6151 -3 219 355 0 0 chr3 162345781 162345857 -55691301 - L2 LINE L2 -301 2971 2896 2870 118 128 0 chr3 162345936 162346437 -55690721 - MER34B LTR ERV1 0 565 1 4106 208 54 60 chr3 162346437 162346654 -55690504 - MER34B-int LTR ERV1 0 6331 6114 261 0 0 0 chr3 162346654 162346683 -55690475 + (AACTG)n Simple_repeat Simple_repeat 2 30 0 4106 208 54 60 chr3 162346683 162347693 -55689465 - MER34B-int LTR ERV1 -217 6114 5112 1478 179 27 19 chr3 162347704 162347967 -55689191 - AluJo SINE Alu -47 265 1 1255 242 54 70 chr3 162347967 162348248 -55688910 - MER34B-int LTR ERV1 -1985 2951 2667 2140 58 62 0 chr3 162348248 162348523 -55688635 + AluY SINE Alu 1 292 -19 1255 242 54 70 chr3 162348523 162348562 -55688596 - MER34B-int LTR ERV1 -2269 2667 2629 189 0 0 0 chr3 162348562 162348583 -55688575 + (CAA)n Simple_repeat Simple_repeat 2 22 0 1255 242 54 70 chr3 162348583 162348814 -55688344 - MER34B-int LTR ERV1 -2307 2629 2408 492 202 38 126 chr3 162348929 162349191 -55687967 - MER34B-int LTR ERV1 -1906 2974 2099 * 785 223 25 60 chr3 162349181 162349463 -55687695 - MER34B-int LTR ERV1 -2979 1957 1686 1517 181 71 47 chr3 162349486 162350141 -55687017 - MER34B-int LTR ERV1 -2866 2005 883 309 110 219 14 chr3 162350193 162350266 -55686892 - MER67D LTR ERV1 -307 207 120 1264 227 57 23 chr3 162350445 162350797 -55686361 - MER34B-int LTR ERV1 -4279 657 294 1089 248 115 40 chr3 162350932 162351376 -55685782 - MER34B-int LTR ERV1 -5489 842 366 256 229 72 0 chr3 162351371 162351454 -55685704 - MER34B-int LTR ERV1 -4954 1377 1289 * 254 259 72 90 chr3 162351433 162351599 -55685559 - MER34B-int LTR ERV1 -6092 239 77 * 3079 134 30 21 chr3 162351699 162352230 -55684928 - MER34B LTR ERV1 -29 536 1 364 175 12 50 chr3 162353409 162353489 -55683669 + MER20 DNA MER1_type 1 77 -142 529 141 0 0 chr3 162353565 162353643 -55683515 + THE1A LTR MaLR 276 353 -2 11789 90 6 1 chr3 162353645 162355217 -55681941 + THE1A-int LTR MaLR 1 1580 0 2712 87 0 0 chr3 162355217 162355572 -55681586 + THE1A LTR MaLR 1 355 0 760 180 2 2 chr3 162355587 162355725 -55681433 + MER20 DNA MER1_type 79 219 0 2340 91 0 3 chr3 162355944 162356251 -55680907 - AluSx SINE Alu -6 306 1 1104 156 52 8 chr3 162357410 162357660 -55679498 + L1MA8 LINE L1 6019 6279 -12 205 156 0 0 chr3 162359330 162359362 -55677796 + GA-rich Low_complexity Low_complexity 1 32 0 24 32 0 0 chr3 162359595 162359626 -55677532 + AT_rich Low_complexity Low_complexity 1 31 0 22 70 0 0 chr3 162359790 162359833 -55677325 + AT_rich Low_complexity Low_complexity 1 43 0 2157 181 167 8 chr3 162360936 162361439 -55675719 - MER34C LTR ERV1 -2 583 1 4394 152 16 5 chr3 162361461 162362198 -55674960 - L1PA16 LINE L1 -2 6164 5420 2374 148 24 0 chr3 162362255 162362632 -55674526 - MER57A LTR ERV1 -17 386 1 359 244 150 8 chr3 162363285 162363412 -55673746 - MER103 DNA DNA -20 146 2 3079 127 86 25 chr3 162363667 162364228 -55672930 - LTR49 LTR ERV1 0 595 1 312 256 12 99 chr3 162364381 162364553 -55672605 + LTR67 LTR ERVL 2 158 -399 2262 83 0 42 chr3 162364814 162365127 -55672031 + AluY SINE Alu 1 300 -11 287 371 0 0 chr3 162365128 162365225 -55671933 + MLT1K LTR MaLR 267 363 -225 3341 166 19 80 chr3 162365266 162366002 -55671156 - LTR8 LTR ERV1 0 691 1 256 165 0 38 chr3 162367604 162367683 -55669475 + CT-rich Low_complexity Low_complexity 2 77 0 318 283 20 0 chr3 162368322 162368421 -55668737 + HERVL68 LTR ERVL 2783 2883 -154 547 200 37 0 chr3 162368604 162368739 -55668419 - L1MC4 LINE L1 -410 7632 7493 3041 224 42 35 chr3 162368813 162369719 -55667439 + L1ME2 LINE L1 4892 5817 -347 1885 163 0 7 chr3 162369719 162370008 -55667150 + AluSx SINE Alu 1 287 -25 3041 224 42 35 chr3 162370008 162370351 -55666807 + L1ME2 LINE L1 5817 6156 -8 214 231 0 0 chr3 162371600 162371639 -55665519 + (CA)n Simple_repeat Simple_repeat 2 40 0 1892 315 112 62 chr3 162371706 162373138 -55664020 - L3 LINE CR1 -10 1567 64 918 246 96 8 chr3 162373139 162373379 -55663779 + MIR SINE MIR 2 262 0 274 204 9 120 chr3 162375044 162375152 -55662006 + L3 LINE CR1 1314 1409 -168 917 302 50 20 chr3 162375234 162375631 -55661527 - LTR16C LTR ERVL -2 489 81 376 328 56 0 chr3 162376584 162376709 -55660449 + L2 LINE L2 3182 3313 0 299 328 59 17 chr3 162377512 162377631 -55659527 - MIR3 SINE MIR -77 131 8 431 271 73 57 chr3 162378214 162378391 -55658767 - L2 LINE L2 -182 3090 2911 614 267 86 16 chr3 162378711 162378898 -55658260 + MIR SINE MIR 7 206 -56 24 32 0 0 chr3 162379520 162379551 -55657607 + AT_rich Low_complexity Low_complexity 1 31 0 180 246 116 14 chr3 162380478 162380547 -55656611 - L3 LINE CR1 -1 1576 1501 197 268 14 28 chr3 162380613 162380684 -55656474 - L3 LINE CR1 -871 706 637 2426 66 0 7 chr3 162380779 162381083 -55656075 + AluY SINE Alu 1 302 -9 367 370 79 5 chr3 162381513 162381702 -55655456 - MIR3 SINE MIR 0 208 6 1205 238 90 50 chr3 162381775 162382255 -55654903 + MLT1D LTR MaLR 7 505 0 240 35 0 0 chr3 162382741 162382770 -55654388 + (CA)n Simple_repeat Simple_repeat 1 29 0 316 302 12 0 chr3 162383030 162383116 -55654042 + MER81 DNA DNA 5 91 -23 829 174 23 0 chr3 162384916 162385048 -55652110 + AluJb SINE Alu 1 135 -177 3015 198 45 37 chr3 162385310 162386153 -55651005 + L1MC4a LINE L1 6959 7808 0 28 0 0 0 chr3 162386172 162386200 -55650958 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr3 162386433 162386464 -55650694 + AT_rich Low_complexity Low_complexity 1 31 0 484 329 26 13 chr3 162387728 162387880 -55649278 - L2 LINE L2 -1 3271 3118 702 113 0 0 chr3 162389549 162389655 -55647503 + (TA)n Simple_repeat Simple_repeat 2 107 0 21 0 0 0 chr3 162389894 162389915 -55647243 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr3 162390185 162390209 -55646949 + (A)n Simple_repeat Simple_repeat 1 24 0 26 50 0 0 chr3 162391314 162391354 -55645804 + AT_rich Low_complexity Low_complexity 1 40 0 2812 16 3 0 chr3 162391825 162392136 -55645022 - AluYb8 SINE Alu -6 312 1 282 298 163 7 chr3 162392550 162392691 -55644467 - MIR3 SINE MIR -6 202 40 2164 56 45 4 chr3 162393095 162393399 -55643759 - AluY SINE Alu 0 318 4 2217 110 0 10 chr3 162393864 162394227 -55642931 + AluSg SINE Alu 1 360 0 509 196 101 18 chr3 162394718 162394886 -55642272 - MER53 DNA DNA 0 189 8 1026 114 33 22 chr3 162395108 162395292 -55641866 + MER20 DNA MER1_type 30 215 -4 219 69 0 0 chr3 162395474 162395503 -55641655 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 414 248 30 46 chr3 162396559 162396729 -55640429 + MIR SINE MIR 19 189 -62 529 372 31 43 chr3 162397506 162397831 -55639327 - L2 LINE L2 -37 3235 2915 189 0 0 0 chr3 162399875 162399896 -55637262 + (T)n Simple_repeat Simple_repeat 1 21 0 1205 172 40 0 chr3 162400523 162400721 -55636437 + AluJo SINE Alu 87 292 -20 267 250 18 0 chr3 162400773 162400829 -55636329 - L2 LINE L2 -15 3257 3201 206 259 0 19 chr3 162400829 162400883 -55636275 + GA-rich Low_complexity Low_complexity 4 56 0 2244 89 7 3 chr3 162401103 162401396 -55635762 + AluSq SINE Alu 1 294 -19 24 0 0 0 chr3 162401790 162401814 -55635344 + AT_rich Low_complexity Low_complexity 1 24 0 213 383 39 23 chr3 162401929 162402057 -55635101 + L2 LINE L2 3143 3272 0 393 374 22 7 chr3 162403267 162403406 -55633752 - L2 LINE L2 -20 3252 3112 242 354 50 27 chr3 162403606 162403866 -55633292 - L2 LINE L2 -411 2903 2638 234 211 42 21 chr3 162406053 162406148 -55631010 + L1ME4a LINE L1 6025 6121 0 402 301 49 0 chr3 162406386 162406529 -55630629 - MIR SINE MIR -50 212 63 1406 77 6 6 chr3 162407441 162407623 -55629535 - AluSq SINE Alu -131 182 1 300 256 73 51 chr3 162407781 162407918 -55629240 + MIR SINE MIR 8 147 -115 290 370 50 8 chr3 162409077 162409315 -55627843 + L2 LINE L2 2487 2734 -580 765 267 68 14 chr3 162409336 162409557 -55627601 + MIR SINE MIR 8 240 -22 2063 123 27 0 chr3 162409567 162409868 -55627290 - AluSx SINE Alu -3 309 1 198 313 76 80 chr3 162409925 162410200 -55626958 + L2 LINE L2 2845 3118 -154 2273 110 10 0 chr3 162410697 162411005 -55626153 - AluSp SINE Alu -2 311 1 262 306 45 45 chr3 162411134 162411268 -55625890 - MIR SINE MIR -69 193 60 2337 95 0 0 chr3 162412625 162412921 -55624237 + AluSg SINE Alu 1 296 -14 238 244 150 69 chr3 162413420 162413580 -55623578 + MIR SINE MIR 15 187 -75 310 259 269 15 chr3 162413607 162413804 -55623354 + MIR SINE MIR 14 260 -2 1044 81 0 15 chr3 162413958 162414094 -55623064 - AluSq/x SINE Alu -178 134 1 180 267 67 56 chr3 162414420 162414510 -55622648 - L3 LINE CR1 -1301 276 186 2000 92 0 0 chr3 162414526 162414775 -55622383 - AluSg SINE Alu -18 292 44 560 331 22 0 chr3 162416424 162416605 -55620553 + MIR SINE MIR 8 192 -70 354 23 0 0 chr3 162416647 162416690 -55620468 + (CA)n Simple_repeat Simple_repeat 2 44 0 237 65 0 0 chr3 162416992 162417023 -55620135 + (CA)n Simple_repeat Simple_repeat 1 31 0 266 245 133 10 chr3 162417411 162417509 -55619649 + MIR SINE MIR 143 252 -10 230 56 28 0 chr3 162417814 162417850 -55619308 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 370 274 134 19 chr3 162418570 162418727 -55618431 - MIR SINE MIR -48 214 40 281 285 57 32 chr3 162419460 162419618 -55617540 + L1 LINE L1 4003 4164 -1982 23 0 0 0 chr3 162419822 162419845 -55617313 + AT_rich Low_complexity Low_complexity 1 23 0 31 26 0 0 chr3 162419904 162419942 -55617216 + AT_rich Low_complexity Low_complexity 1 38 0 2110 129 3 0 chr3 162420004 162420299 -55616859 - AluSx SINE Alu -16 296 1 218 330 174 9 chr3 162420497 162420612 -55616546 + MIR SINE MIR 18 151 -111 313 302 141 0 chr3 162420680 162420829 -55616329 - L2 LINE L2 -997 2317 2148 2188 117 7 0 chr3 162420836 162421144 -55616014 + AluSp SINE Alu 1 310 -3 538 262 115 21 chr3 162421233 162421424 -55615734 + MIR SINE MIR 53 261 -1 1207 203 58 0 chr3 162421573 162421868 -55615290 - MER33 DNA MER1_type -12 312 1 194 232 51 130 chr3 162422914 162423052 -55614106 - L3 LINE CR1 -265 1312 1186 2123 139 0 0 chr3 162423951 162424254 -55612904 - AluSx SINE Alu -9 303 1 22 35 0 0 chr3 162424687 162424716 -55612442 + AT_rich Low_complexity Low_complexity 1 29 0 201 367 58 8 chr3 162426863 162426983 -55610175 - MIR3 SINE MIR -76 132 7 23 0 0 0 chr3 162428192 162428215 -55608943 + AT_rich Low_complexity Low_complexity 1 23 0 2309 86 0 3 chr3 162429029 162429332 -55607826 - AluSc SINE Alu -7 302 1 232 327 64 18 chr3 162429504 162429614 -55607544 + MIR SINE MIR 113 227 -35 985 195 0 0 chr3 162430155 162430324 -55606834 + AluJb SINE Alu 121 289 -23 819 219 17 6 chr3 162430744 162430922 -55606236 - MER58A DNA MER1_type -15 209 30 299 252 70 26 chr3 162430944 162431059 -55606099 - MIR SINE MIR 0 262 143 483 230 11 94 chr3 162433170 162433212 -55603946 - MER5B DNA MER1_type -3 175 131 2227 116 0 0 chr3 162433212 162433513 -55603645 + AluSg SINE Alu 1 301 -9 483 230 11 94 chr3 162433513 162433661 -55603497 - MER5B DNA MER1_type -47 131 1 24 53 0 0 chr3 162434297 162434335 -55602823 + AT_rich Low_complexity Low_complexity 1 38 0 874 291 43 0 chr3 162434632 162434866 -55602292 + MIR SINE MIR 3 246 -16 847 196 0 0 chr3 162434956 162435099 -55602059 + AluJb SINE Alu 137 279 -33 462 36 0 0 chr3 162435099 162435155 -55602003 + (CA)n Simple_repeat Simple_repeat 1 56 0 4542 210 73 46 chr3 162435934 162435993 -55601165 + L1MDb LINE L1 759 815 -5591 2029 140 0 0 chr3 162435993 162436305 -55600853 + AluSx SINE Alu 1 312 0 4542 210 73 46 chr3 162436305 162436320 -55600838 + L1MDb LINE L1 815 828 -5578 1793 132 84 0 chr3 162436320 162436593 -55600565 + AluSx SINE Alu 3 298 -14 4542 210 73 46 chr3 162436593 162438417 -55598741 + L1MDb LINE L1 828 2719 -3687 254 319 77 86 chr3 162438819 162439274 -55597884 + L2 LINE L2 2853 3303 -10 211 205 24 48 chr3 162439481 162439564 -55597594 + (TATATG)n Simple_repeat Simple_repeat 2 82 0 1750 172 3 24 chr3 162442309 162442600 -55594558 + AluJb SINE Alu 1 285 -27 304 243 18 0 chr3 162442600 162442711 -55594447 + (TA)n Simple_repeat Simple_repeat 2 114 0 315 0 0 0 chr3 162443170 162443205 -55593953 + (A)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr3 162443327 162443348 -55593810 + AT_rich Low_complexity Low_complexity 1 21 0 2139 56 45 4 chr3 162444052 162444356 -55592802 - AluY SINE Alu 0 318 4 2169 104 0 19 chr3 162444821 162445137 -55592021 + AluSg SINE Alu 1 310 0 581 300 41 28 chr3 162445257 162445359 -55591799 + L1M4 LINE L1 2226 2325 -3821 1685 185 47 0 chr3 162445359 162445657 -55591501 + AluJb SINE Alu 1 312 0 581 300 41 28 chr3 162445657 162446090 -55591068 + L1M4 LINE L1 2325 2768 -3378 24 0 0 0 chr3 162446146 162446170 -55590988 + AT_rich Low_complexity Low_complexity 1 24 0 1804 104 4 8 chr3 162446509 162446759 -55590399 + AluY SINE Alu 44 292 -19 314 71 0 0 chr3 162446999 162447041 -55590117 - L1PA5 LINE L1 -9 6145 6104 2389 78 3 3 chr3 162447896 162448204 -55588954 + AluSg SINE Alu 1 308 -2 327 318 175 0 chr3 162448544 162448698 -55588460 - MER91A DNA MER1_type 0 196 16 369 301 127 12 chr3 162448752 162448918 -55588240 + MER5A DNA MER1_type 4 188 -1 328 282 136 0 chr3 162448918 162449023 -55588135 + L2 LINE L2 3193 3312 -1 559 256 90 71 chr3 162449104 162449206 -55587952 + MIR SINE MIR 45 144 -118 1620 191 0 32 chr3 162449206 162449521 -55587637 - AluJb SINE Alu -7 305 1 559 256 90 71 chr3 162449521 162449629 -55587529 + MIR SINE MIR 144 259 -3 269 185 0 37 chr3 162450032 162450086 -55587072 - L2 LINE L2 0 3313 3262 226 310 35 26 chr3 162451501 162451614 -55585544 + L1ME3A LINE L1 6057 6170 0 878 184 163 28 chr3 162451692 162451974 -55585184 + MER33 DNA MER1_type 1 320 -4 198 0 0 0 chr3 162454255 162454277 -55582881 + (A)n Simple_repeat Simple_repeat 1 22 0 381 240 31 23 chr3 162454278 162454407 -55582751 + HAL1b LINE L1 416 545 -803 847 253 63 17 chr3 162454411 162454648 -55582510 + MIR SINE MIR 3 250 -12 848 251 96 8 chr3 162454724 162454963 -55582195 + MIR SINE MIR 2 261 -1 183 302 0 0 chr3 162455116 162455159 -55581999 - L2 LINE L2 -8 3305 3263 2223 255 150 19 chr3 162455210 162456214 -55580944 + L2 LINE L2 2158 3309 -4 206 367 0 25 chr3 162457306 162457385 -55579773 - L2 LINE L2 -10 3262 3186 713 251 69 20 chr3 162457653 162457900 -55579258 + MER112 DNA MER1_type 2 260 0 2110 110 0 0 chr3 162458067 162458380 -55578778 + AluSx SINE Alu 1 313 0 673 214 94 41 chr3 162459807 162460013 -55577145 - MIR SINE MIR -26 236 8 1949 140 4 0 chr3 162460420 162460698 -55576460 + AluSq SINE Alu 3 281 -32 24 0 0 0 chr3 162461263 162461287 -55575871 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr3 162461358 162461380 -55575778 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr3 162461611 162461640 -55575518 + AT_rich Low_complexity Low_complexity 1 29 0 203 372 86 43 chr3 162461688 162462175 -55574983 - L2 LINE L2 -641 2673 2166 2019 131 0 30 chr3 162462286 162462584 -55574574 + AluSx SINE Alu 1 289 -23 2119 88 30 3 chr3 162462584 162462879 -55574279 + AluSg SINE Alu 1 303 -7 25 51 0 0 chr3 162462961 162463000 -55574158 + AT_rich Low_complexity Low_complexity 1 39 0 206 343 40 10 chr3 162463260 162463359 -55573799 - L2 LINE L2 -1388 1926 1825 2264 137 42 51 chr3 162463904 162464334 -55572824 + MSTB LTR MaLR 1 426 0 24 0 0 0 chr3 162464456 162464480 -55572678 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr3 162464733 162464757 -55572401 + AT_rich Low_complexity Low_complexity 1 24 0 479 309 146 5 chr3 162465420 162465640 -55571518 + MIR SINE MIR 12 262 0 1886 217 29 61 chr3 162466431 162466989 -55570169 + MLT1F LTR MaLR 3 542 0 1361 149 113 23 chr3 162467254 162467446 -55569712 - MER44D DNA MER2_type -1882 609 436 1141 192 12 75 chr3 162467446 162467535 -55569623 - MER8 DNA MER2_type 0 239 146 2633 23 7 3 chr3 162467535 162467844 -55569314 + AluY SINE Alu 1 310 -1 2169 103 4 0 chr3 162467853 162468163 -55568995 + AluY SINE Alu 1 311 0 1141 192 12 75 chr3 162468163 162468317 -55568841 - MER8 DNA MER2_type -101 138 1 1361 149 113 23 chr3 162468317 162468425 -55568733 - MER44D DNA MER2_type -2055 436 12 225 337 44 17 chr3 162468431 162468612 -55568546 - L1ME LINE L1 -304 5866 5681 284 292 52 43 chr3 162468690 162468807 -55568351 - L1ME LINE L1 -615 5549 5435 1386 137 169 12 chr3 162468807 162469062 -55568096 - AluJb SINE Alu -14 298 4 284 292 52 43 chr3 162469062 162469237 -55567921 - L1ME LINE L1 -729 5435 5260 197 321 142 12 chr3 162469750 162469912 -55567246 + L2 LINE L2 3084 3266 -47 21 36 0 0 chr3 162470344 162470372 -55566786 + AT_rich Low_complexity Low_complexity 1 28 0 987 177 0 0 chr3 162471789 162471947 -55565211 - FRAM SINE Alu -24 152 1 1053 113 0 0 chr3 162471970 162472154 -55565004 + AluY SINE Alu 134 317 0 2313 114 0 13 chr3 162472261 162472577 -55564581 + AluSx SINE Alu 1 312 0 2855 194 61 14 chr3 162473476 162474364 -55562794 - L1MC/D LINE L1 -756 5390 4697 1922 108 71 14 chr3 162474367 162474662 -55562496 + AluSx SINE Alu 1 312 0 614 267 111 18 chr3 162474787 162475012 -55562146 + MIR SINE MIR 13 258 -4 2413 74 0 3 chr3 162475857 162476155 -55561003 - AluY SINE Alu -14 297 1 2115 46 8 0 chr3 162476929 162477188 -55559970 - AluY SINE Alu -50 261 1 1773 40 9 5 chr3 162477358 162477580 -55559578 - AluY SINE Alu -3 308 86 180 279 25 63 chr3 162477770 162477849 -55559309 - L2 LINE L2 0 3313 3238 336 315 237 0 chr3 162478360 162478441 -55558717 - L1MC4a LINE L1 -1904 5904 5843 1311 100 96 13 chr3 162478441 162478671 -55558487 - L1MB3 LINE L1 0 6183 5935 336 315 237 0 chr3 162478671 162478821 -55558337 - L1MC4a LINE L1 -1965 5843 5618 838 302 131 40 chr3 162478935 162479793 -55557365 - L1MC4a LINE L1 -748 5398 4463 2426 63 17 3 chr3 162480057 162480359 -55556799 - AluY SINE Alu -5 306 1 782 155 31 0 chr3 162480782 162480911 -55556247 - FLAM_A SINE Alu 0 133 1 2311 76 0 7 chr3 162480958 162481249 -55555909 + AluSc SINE Alu 1 289 -20 2316 95 0 7 chr3 162481509 162481805 -55555353 + AluY SINE Alu 1 294 -17 1219 199 3 36 chr3 162482045 162482382 -55554776 + pTR5 LTR ERV1 743 1068 -1370 1112 218 23 91 chr3 162482862 162483334 -55553824 + MLT1F LTR MaLR 16 455 -87 22 0 0 0 chr3 162484846 162484868 -55552290 + AT_rich Low_complexity Low_complexity 1 22 0 1731 118 118 0 chr3 162485345 162485607 -55551551 + AluSq SINE Alu 2 294 -19 2190 137 3 0 chr3 162485834 162486133 -55551025 - AluSq SINE Alu -13 300 1 25 0 0 0 chr3 162486315 162486340 -55550818 + AT_rich Low_complexity Low_complexity 1 25 0 917 212 0 0 chr3 162487376 162487546 -55549612 - FRAM SINE Alu -6 170 1 28 0 0 0 chr3 162487566 162487594 -55549564 + AT_rich Low_complexity Low_complexity 1 28 0 673 148 0 0 chr3 162487751 162487852 -55549306 + FLAM_C SINE Alu 11 111 -32 578 152 0 30 chr3 162487856 162487955 -55549203 + AluSg/x SINE Alu 197 292 -18 4747 204 80 33 chr3 162488786 162489069 -55548089 + Charlie1a DNA MER1_type 1 269 -2492 2124 111 16 7 chr3 162489069 162489376 -55547782 + AluSq SINE Alu 1 310 -3 4747 204 80 33 chr3 162489376 162490481 -55546677 + Charlie1a DNA MER1_type 269 1454 -1 2330 113 0 0 chr3 162490642 162490943 -55546215 + AluSx SINE Alu 1 301 -11 1698 177 3 24 chr3 162491644 162491938 -55545220 + AluJb SINE Alu 1 288 -24 21 0 0 0 chr3 162491949 162491970 -55545188 + AT_rich Low_complexity Low_complexity 1 21 0 472 261 30 67 chr3 162492091 162492256 -55544902 + MIR3 SINE MIR 45 203 -5 1845 160 0 7 chr3 162493291 162493579 -55543579 + AluJb SINE Alu 1 286 -26 345 213 120 46 chr3 162494861 162494969 -55542189 - Charlie8 DNA MER1_type -2167 250 135 1963 104 25 7 chr3 162495146 162495455 -55541703 + AluSx SINE Alu 1 314 0 22 0 0 0 chr3 162496074 162496096 -55541062 + AT_rich Low_complexity Low_complexity 1 22 0 1165 200 40 0 chr3 162496224 162496449 -55540709 - MIR SINE MIR 0 262 29 4460 209 79 60 chr3 162496634 162496852 -55540306 + L1M4 LINE L1 16 228 -6314 2078 91 22 4 chr3 162496852 162497174 -55539984 + AluSc SINE Alu 1 327 0 4460 209 79 60 chr3 162497174 162498143 -55539015 + L1M4 LINE L1 228 1177 -5365 1946 157 0 20 chr3 162498143 162498443 -55538715 + AluJo SINE Alu 1 294 -18 4460 209 79 60 chr3 162498443 162498455 -55538703 + L1M4 LINE L1 1177 1187 -5355 2530 57 0 0 chr3 162498455 162498751 -55538407 + AluY SINE Alu 1 296 -15 4460 209 79 60 chr3 162498751 162499204 -55537954 + L1M4 LINE L1 1187 1703 -4839 238 206 0 16 chr3 162499209 162499272 -55537886 + FLAM_A SINE Alu 72 133 0 47 75 0 0 chr3 162499272 162499339 -55537819 + AT_rich Low_complexity Low_complexity 1 67 0 352 234 61 72 chr3 162499363 162499460 -55537698 + L1M4 LINE L1 2268 2365 -4281 2096 111 10 16 chr3 162499460 162499766 -55537392 - AluSc SINE Alu -1 308 5 352 234 61 72 chr3 162499766 162499946 -55537212 + L1M4 LINE L1 2365 2542 -4104 1370 178 25 14 chr3 162499956 162500237 -55536921 + L1MB7 LINE L1 5882 6165 -19 21 0 0 0 chr3 162500613 162500634 -55536524 + AT_rich Low_complexity Low_complexity 1 21 0 674 129 73 81 chr3 162500762 162500977 -55536181 + Tigger3(Golem) DNA MER2_type 2 2863 -166 285 210 48 0 chr3 162500987 162501049 -55536109 + Tigger3(Golem) DNA MER2_type 2974 3038 0 237 212 30 0 chr3 162501145 162501211 -55535947 + A-rich Low_complexity Low_complexity 5 72 0 933 236 13 50 chr3 162501946 162502056 -55535102 + L1ME2 LINE L1 5866 5978 -186 2479 65 0 3 chr3 162502056 162502365 -55534793 + AluY SINE Alu 1 308 -3 933 236 13 50 chr3 162502365 162502555 -55534603 + L1ME2 LINE L1 5978 6155 -9 22 0 0 0 chr3 162502602 162502624 -55534534 + AT_rich Low_complexity Low_complexity 1 22 0 2171 129 7 3 chr3 162502849 162503159 -55533999 + AluSp SINE Alu 1 311 -2 23 33 0 0 chr3 162503206 162503236 -55533922 + AT_rich Low_complexity Low_complexity 1 30 0 1509 150 21 49 chr3 162503534 162503821 -55533337 + AluSq SINE Alu 28 306 -7 412 203 0 0 chr3 162504348 162504417 -55532741 + AluJ/FLAM SINE Alu 1 69 -243 2239 87 7 10 chr3 162505088 162505387 -55531771 + AluSx SINE Alu 1 298 -14 318 346 118 8 chr3 162505800 162505927 -55531231 + L2 LINE L2 3127 3267 -5 2445 74 0 3 chr3 162507455 162507766 -55529392 - AluSx SINE Alu -2 310 1 2195 102 0 7 chr3 162508128 162508421 -55528737 + AluSx SINE Alu 1 291 -21 359 258 88 39 chr3 162509287 162509469 -55527689 + L1ME4a LINE L1 5929 6119 -2 466 223 47 0 chr3 162509508 162509656 -55527502 - L1MD3 LINE L1 -15 7980 7826 1754 110 50 57 chr3 162510413 162510714 -55526444 - AluJo SINE Alu -11 301 3 1902 151 10 0 chr3 162510788 162511080 -55526078 - AluJo SINE Alu -17 295 1 541 207 74 0 chr3 162511119 162511240 -55525918 - FLAM_A SINE Alu -3 130 1 1636 192 3 20 chr3 162511422 162511724 -55525434 + AluJo SINE Alu 5 301 -11 25 0 0 0 chr3 162511841 162511866 -55525292 + AT_rich Low_complexity Low_complexity 1 25 0 777 211 43 0 chr3 162511935 162512096 -55525062 + FRAM SINE Alu 1 166 -10 769 68 0 0 chr3 162512350 162512453 -55524705 - HY1 scRNA scRNA -9 103 1 1678 166 7 20 chr3 162512621 162512916 -55524242 + AluJb SINE Alu 1 291 -21 1905 123 19 0 chr3 162513286 162513547 -55523611 + AluSx SINE Alu 1 266 -46 198 0 0 0 chr3 162513552 162513574 -55523584 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 2132 107 38 0 chr3 162514467 162514757 -55522401 + AluSc SINE Alu 1 301 -8 2815 84 150 179 chr3 162514842 162515793 -55521365 - pTR5 LTR ERV1 0 2438 1217 2268 97 17 0 chr3 162515941 162516240 -55520918 + AluSq SINE Alu 1 304 -9 418 226 214 31 chr3 162516785 162516944 -55520214 - MLT1J LTR MaLR -315 196 9 186 43 0 0 chr3 162517082 162517105 -55520053 + (TC)n Simple_repeat Simple_repeat 1 23 0 744 213 75 0 chr3 162517113 162517287 -55519871 + MLT1B LTR MaLR 188 374 -16 788 202 74 44 chr3 162517537 162517664 -55519494 + MER3 DNA MER1_type 1 138 -71 1713 174 14 7 chr3 162517664 162517952 -55519206 - AluSx SINE Alu -22 290 1 788 202 74 44 chr3 162517952 162518027 -55519131 + MER3 DNA MER1_type 138 209 0 1562 160 20 34 chr3 162518248 162518588 -55518570 - AluJo SINE Alu 0 336 1 955 206 10 57 chr3 162518588 162518797 -55518361 - MER20 DNA MER1_type -20 199 1 326 143 0 32 chr3 162518867 162518930 -55518228 + L2 LINE L2 2202 2262 -1052 272 256 146 22 chr3 162518926 162518951 -55518207 + L2 LINE L2 3159 3180 -133 * 4971 74 36 11 chr3 162518951 162519611 -55517547 - L1PA12 LINE L1 -1 6167 5491 272 256 146 22 chr3 162519611 162519722 -55517436 + L2 LINE L2 3180 3312 -1 385 145 16 0 chr3 162519836 162519898 -55517260 - Tigger4(Zombi) DNA MER2_type -1 2730 2668 644 125 0 0 chr3 162519926 162520014 -55517144 + AluJ/FLAM SINE Alu 2 89 -223 903 171 0 7 chr3 162520014 162520160 -55516998 + AluJo/FRAM SINE Alu 138 282 -30 4872 127 13 55 chr3 162520161 162520535 -55516623 - Tigger4(Zombi) DNA MER2_type -56 2675 2287 2248 74 0 65 chr3 162520535 162520860 -55516298 + AluY SINE Alu 1 304 -7 4872 127 13 55 chr3 162520860 162520976 -55516182 - Tigger4(Zombi) DNA MER2_type -444 2287 2168 2693 142 9 49 chr3 162520976 162521427 -55515731 + Tigger2a DNA MER2_type 1 433 -1 4872 127 13 55 chr3 162521427 162521683 -55515475 - Tigger4(Zombi) DNA MER2_type -563 2168 1964 2059 153 3 0 chr3 162521683 162521991 -55515167 - AluSx SINE Alu -3 309 1 4872 127 13 55 chr3 162521991 162522084 -55515074 - Tigger4(Zombi) DNA MER2_type -767 1964 1869 425 132 0 0 chr3 162522080 162522148 -55515010 - Tigger4(Zombi) DNA MER2_type -2653 78 11 * 2263 203 57 5 chr3 162522433 162522871 -55514287 - LOR1b LTR ERV1 0 461 1 332 161 0 0 chr3 162522872 162522928 -55514230 - LOR1b-int LTR ERV1 -1 8119 8064 238 241 36 48 chr3 162522928 162523011 -55514147 - MLT1J LTR MaLR -378 133 52 1415 94 10 5 chr3 162523011 162523213 -55513945 - LOR1b-int LTR ERV1 -2117 6003 5801 * 15722 103 27 21 chr3 162523203 162524509 -55512649 - LOR1b-int LTR ERV1 -2596 5524 4196 2274 70 42 0 chr3 162524509 162524793 -55512365 - AluY SINE Alu -15 296 1 15722 103 27 21 chr3 162524793 162525892 -55511266 - LOR1b-int LTR ERV1 -3924 4196 3105 1785 114 4 0 chr3 162525893 162526130 -55511028 + AluSx SINE Alu 1 238 -74 4457 101 108 111 chr3 162526130 162527509 -55509649 + pTR5 LTR ERV1 745 2438 0 463 147 0 0 chr3 162527510 162527578 -55509580 + AluSx SINE Alu 228 295 -14 9891 107 56 23 chr3 162527578 162528701 -55508457 - LOR1b-int LTR ERV1 -5013 3107 2022 2498 62 0 0 chr3 162528701 162529005 -55508153 - AluY SINE Alu -7 304 1 9891 107 56 23 chr3 162529005 162529528 -55507630 - LOR1b-int LTR ERV1 -6098 2022 1518 2046 130 7 0 chr3 162529528 162529853 -55507305 - AluSx SINE Alu 0 327 1 9891 107 56 23 chr3 162529853 162530414 -55506744 - LOR1b-int LTR ERV1 -6602 1518 977 2195 113 8 100 chr3 162530414 162530805 -55506353 - THE1A LTR MaLR 0 355 1 9891 107 56 23 chr3 162530805 162531283 -55505875 - LOR1b-int LTR ERV1 -7143 977 216 1804 180 62 25 chr3 162531295 162531695 -55505463 - LOR1b-int LTR ERV1 -7702 418 4 2062 163 59 55 chr3 162531697 162532128 -55505030 - LOR1b LTR ERV1 0 461 26 2318 111 0 61 chr3 162532128 162532487 -55504671 + MER1B DNA MER1_type 1 337 0 2062 163 59 55 chr3 162532487 162532514 -55504644 - LOR1b LTR ERV1 -435 26 1 2093 123 0 13 chr3 162532710 162533010 -55504148 - AluSx SINE Alu -16 296 1 228 281 10 52 chr3 162533471 162533567 -55503591 - L2 LINE L2 0 3313 3222 258 197 254 0 chr3 162537555 162537626 -55499532 - MER5B DNA MER1_type 0 178 90 441 274 20 59 chr3 162537652 162537805 -55499353 - L2 LINE L2 -454 2860 2714 211 174 22 22 chr3 162537831 162537877 -55499281 - L2 LINE L2 -4 3309 3264 3569 209 60 44 chr3 162537956 162538966 -55498192 - L1ME1 LINE L1 -18 6148 5130 279 0 0 0 chr3 162538966 162538997 -55498161 + (TA)n Simple_repeat Simple_repeat 2 32 0 3569 209 60 44 chr3 162538997 162539023 -55498135 - L1ME1 LINE L1 -1036 5130 5106 186 246 53 9 chr3 162539052 162539166 -55497992 + CT-rich Low_complexity Low_complexity 2 120 0 * 569 243 0 27 chr3 162539158 162539343 -55497815 + C-rich Low_complexity Low_complexity 1 180 0 380 212 22 49 chr3 162539356 162539540 -55497618 + CT-rich Low_complexity Low_complexity 1 179 0 257 277 0 31 chr3 162539540 162539605 -55497553 + C-rich Low_complexity Low_complexity 1 63 0 377 295 0 23 chr3 162539649 162539850 -55497308 + C-rich Low_complexity Low_complexity 1 196 0 386 333 11 17 chr3 162539899 162540076 -55497082 + C-rich Low_complexity Low_complexity 1 176 0 332 56 167 0 chr3 162540177 162540231 -55496927 - AluS SINE Alu -238 64 2 260 249 110 64 chr3 162541083 162541256 -55495902 - MER117 DNA MER1_type -11 186 6 3154 137 26 14 chr3 162541380 162541878 -55495280 + L1PA16 LINE L1 5654 6157 -9 289 236 27 108 chr3 162541928 162542076 -55495082 + MIR SINE MIR 121 256 -6 4903 45 4 0 chr3 162542645 162543203 -55493955 - L1PA5 LINE L1 0 6154 5595 514 248 69 40 chr3 162543205 162543407 -55493751 + L2 LINE L2 594 801 -2513 1142 190 73 59 chr3 162543410 162543860 -55493298 - MLT1B LTR MaLR 0 467 1 5874 239 66 32 chr3 162543863 162545540 -55491618 + L2 LINE L2 802 2550 -764 2280 35 0 0 chr3 162545540 162545797 -55491361 - L1PA2 LINE L1 0 6155 5899 5874 239 66 32 chr3 162545797 162545980 -55491178 + L2 LINE L2 2550 2725 -589 235 255 0 0 chr3 162545956 162546003 -55491155 + L2 LINE L2 3210 3256 -16 * 2063 120 4 0 chr3 162546197 162546520 -55490638 - AluSx SINE Alu 0 329 6 195 184 0 0 chr3 162547168 162547206 -55489952 + A-rich Low_complexity Low_complexity 1 38 0 204 179 0 0 chr3 162547984 162548023 -55489135 + A-rich Low_complexity Low_complexity 1 39 0 506 302 117 22 chr3 162548675 162548897 -55488261 + MIR SINE MIR 20 262 0 662 312 97 21 chr3 162549278 162549659 -55487499 + L1ME4a LINE L1 5476 5885 -236 314 267 339 6 chr3 162550805 162550985 -55486173 - MIR SINE MIR 0 262 23 685 264 187 4 chr3 162551444 162551717 -55485441 - L1ME2 LINE L1 -9 6155 5833 241 333 25 0 chr3 162551887 162551968 -55485190 - MIR SINE MIR -82 180 98 782 228 18 12 chr3 162552017 162552184 -55484974 - MER5B DNA MER1_type 0 178 11 369 0 0 0 chr3 162552287 162552328 -55484830 + (TG)n Simple_repeat Simple_repeat 1 41 0 673 257 166 26 chr3 162552680 162552945 -55484213 - MER102b DNA MER1_type -1 340 39 1754 181 76 12 chr3 162553016 162553359 -55483799 + MLT1A1 LTR MaLR 1 365 0 25 0 0 0 chr3 162553459 162553484 -55483674 + AT_rich Low_complexity Low_complexity 1 25 0 2006 113 4 0 chr3 162554234 162554508 -55482650 + AluSx SINE Alu 1 275 -37 215 31 31 0 chr3 162554514 162554546 -55482612 + (CAA)n Simple_repeat Simple_repeat 1 33 0 1617 280 94 21 chr3 162554558 162555333 -55481825 + L1MC4 LINE L1 6840 7671 -371 376 188 34 242 chr3 162555360 162555653 -55481505 + L1MC4 LINE L1 7803 8034 -8 2807 55 27 2 chr3 162557603 162558008 -55479150 - MER11A LTR ERVK -755 511 1 298 257 155 59 chr3 162558192 162558286 -55478872 - MIR SINE MIR -45 217 133 2366 48 24 7 chr3 162558286 162558578 -55478580 + AluY SINE Alu 1 297 -14 298 257 155 59 chr3 162558578 162558670 -55478488 - MIR SINE MIR -129 133 13 251 287 11 11 chr3 162558732 162558819 -55478339 + GA-rich Low_complexity Low_complexity 4 90 0 183 309 62 12 chr3 162559292 162559373 -55477785 + L2 LINE L2 2518 2602 -712 453 263 90 86 chr3 162560190 162560711 -55476447 + L1ME4a LINE L1 5580 6102 -19 21 0 0 0 chr3 162560740 162560761 -55476397 + AT_rich Low_complexity Low_complexity 1 21 0 323 198 107 79 chr3 162562693 162562719 -55474439 + L1ME4a LINE L1 5938 5962 -159 369 219 240 10 chr3 162562719 162562815 -55474343 + 5S rRNA rRNA 2 119 -2 323 198 107 79 chr3 162562815 162562965 -55474193 + L1ME4a LINE L1 5962 6119 -2 842 272 98 38 chr3 162563139 162563439 -55473719 - L1M4 LINE L1 -2980 3166 2886 2174 99 0 7 chr3 162563439 162563761 -55473397 + AluSg SINE Alu 1 320 0 842 272 98 38 chr3 162563761 162564018 -55473140 - L1M4 LINE L1 -3260 2886 2574 911 179 109 5 chr3 162564137 162564338 -55472820 + MIR SINE MIR 5 226 -36 207 0 0 0 chr3 162565011 162565034 -55472124 + (CA)n Simple_repeat Simple_repeat 2 24 0 1023 293 17 13 chr3 162565034 162565334 -55471824 + HAL1 LINE L1 40 340 -2167 759 286 62 69 chr3 162565396 162565657 -55471501 + HAL1 LINE L1 452 710 -1797 2278 191 23 61 chr3 162565657 162566180 -55470978 + MLT1D LTR MaLR 1 503 -2 759 286 62 69 chr3 162566180 162566366 -55470792 + HAL1 LINE L1 710 896 -1611 7896 165 49 28 chr3 162566385 162568538 -55468620 - L1PA16 LINE L1 -4 6162 3888 316 0 0 0 chr3 162568538 162568610 -55468548 - AluY SINE Alu 0 319 248 7896 165 49 28 chr3 162568610 162569351 -55467807 - L1PA16 LINE L1 -2278 3888 3164 961 229 284 37 chr3 162569370 162570148 -55467010 + HAL1 LINE L1 908 1877 -630 2672 100 71 0 chr3 162570665 162571075 -55466083 + MER4C LTR ERV1 1 439 -26 3007 122 5 0 chr3 162571089 162571515 -55465643 - MSTA LTR MaLR 0 428 1 310 218 13 0 chr3 162572929 162573007 -55464151 + L1MC4 LINE L1 7295 7373 -669 18978 143 31 15 chr3 162573014 162574784 -55462374 + L1MA3 LINE L1 461 2200 -5524 1955 159 0 7 chr3 162574784 162575074 -55462084 - AluSx SINE Alu -24 288 1 18978 143 31 15 chr3 162575074 162578164 -55458994 + L1MA3 LINE L1 2200 5484 -2240 539 89 13 0 chr3 162578164 162578243 -55458915 + MADE1 DNA Mariner 1 80 0 18978 143 31 15 chr3 162578243 162580523 -55456635 + L1MA3 LINE L1 5484 7724 0 3658 172 5 58 chr3 162580651 162581413 -55455745 - MER72 LTR ERV1 0 722 1 1591 186 0 25 chr3 162582601 162582876 -55454282 + AluJo SINE Alu 30 297 -15 242 307 31 31 chr3 162582876 162583003 -55454155 + MARNA DNA Mariner 55 181 -405 2026 135 7 3 chr3 162583037 162583333 -55453825 - AluSx SINE Alu -10 302 6 182 335 43 61 chr3 162584179 162584343 -55452815 - MIR3 SINE MIR -5 203 43 * 279 278 157 9 chr3 162584294 162584402 -55452756 + MIR SINE MIR 6 129 -133 3911 154 54 4 chr3 162584428 162585116 -55452042 - MER72 LTR ERV1 0 722 1 1217 283 25 67 chr3 162585255 162585822 -55451336 - L2 LINE L2 -8 3305 2765 3544 143 70 18 chr3 162585824 162586556 -55450602 - LTR1B LTR ERV1 0 785 1 2134 98 19 6 chr3 162586556 162586872 -55450286 - HUERS-P2 LTR ERV1 -2 3086 2767 29917 155 18 14 chr3 162586894 162592845 -55444313 - LTR1B-int LTR ERV1 -417 2671 365 2351 107 0 0 chr3 162592845 162593154 -55444004 - AluSc SINE Alu 0 309 1 29917 155 18 14 chr3 162593154 162593369 -55443789 - LTR1B-int LTR ERV1 -2723 365 152 3029 142 38 66 chr3 162593370 162594102 -55443056 - LTR1B LTR ERV1 -45 781 1 1199 253 102 21 chr3 162594111 162594483 -55442675 - L2 LINE L2 -564 2750 2349 673 142 26 0 chr3 162594498 162594611 -55442547 - MER4A LTR ERV1 0 664 549 216 158 0 0 chr3 162594679 162594717 -55442441 + (TA)n Simple_repeat Simple_repeat 2 39 0 2272 92 36 16 chr3 162594722 162595218 -55441940 - MER4-int LTR ERV1 -3451 3147 1739 1597 212 22 45 chr3 162595219 162595728 -55441430 + LTR8 LTR ERV1 1 497 -194 493 90 0 0 chr3 162595728 162595795 -55441363 - LTR12 LTR ERV1 -49 665 599 * 3621 118 29 2 chr3 162595784 162596612 -55440546 - HERV9 LTR ERV1 -1935 503 17 265 286 10 0 chr3 162596615 162596713 -55440445 - LTR30 LTR ERV1 -80 642 544 3967 121 60 33 chr3 162596713 162597653 -55439505 - pTR5 LTR ERV1 -413 2025 737 1142 140 75 19 chr3 162597657 162597871 -55439287 + LTR8 LTR ERV1 466 691 0 1158 116 16 56 chr3 162597871 162598121 -55439037 - MER4-int LTR ERV1 -4588 2010 1771 957 64 57 126 chr3 162598119 162598399 -55438759 - MER4-int LTR ERV1 -4266 1284 531 * 667 208 152 6 chr3 162598400 162598650 -55438508 - L1MCa LINE L1 -5780 362 4 468 280 153 6 chr3 162598698 162598855 -55438303 + MER5A DNA MER1_type 4 183 -6 368 299 90 14 chr3 162598841 162598985 -55438173 - L2 LINE L2 -965 2349 2195 * 1533 190 28 41 chr3 162599015 162599409 -55437749 - MER90 LTR ERV1 0 614 226 2776 114 27 14 chr3 162599420 162600012 -55437146 + MER4E LTR ERV1 1 766 0 1043 178 9 9 chr3 162600013 162600232 -55436926 - MER90 LTR ERV1 -395 219 1 355 291 167 17 chr3 162600481 162600690 -55436468 + MIR SINE MIR 23 259 -3 313 356 24 1 chr3 162601685 162601826 -55435332 - MIR SINE MIR -61 147 40 196 191 32 111 chr3 162601949 162602012 -55435146 - MIR3 SINE MIR -6 202 145 261 325 8 34 chr3 162602072 162602189 -55434969 - L3 LINE CR1 -195 1382 1269 2074 151 3 0 chr3 162602684 162602995 -55434163 + AluSx SINE Alu 1 312 0 1607 65 30 4 chr3 162603177 162603408 -55433750 - L1MA1 LINE L1 -4 6298 6062 258 309 16 49 chr3 162603836 162603959 -55433199 - L2 LINE L2 -188 3084 2966 384 288 139 51 chr3 162604046 162604261 -55432897 - MIR SINE MIR -5 257 24 228 111 0 0 chr3 162607476 162607512 -55429646 + L2 LINE L2 3270 3305 -8 1024 99 0 0 chr3 162608601 162608732 -55428426 - AluSg SINE Alu -179 131 1 951 161 0 0 chr3 162608966 162609109 -55428049 + FLAM_C SINE Alu 1 143 0 40 49 0 0 chr3 162609186 162609247 -55427911 + AT_rich Low_complexity Low_complexity 1 61 0 831 343 50 35 chr3 162609253 162609891 -55427267 + L2 LINE L2 2139 2786 -528 585 373 60 17 chr3 162609903 162610201 -55426957 + L2 LINE L2 2954 3264 -8 246 302 171 23 chr3 162611691 162611820 -55425338 - MIR3 SINE MIR -22 186 39 335 299 17 17 chr3 162612602 162612719 -55424439 + GA-rich Low_complexity Low_complexity 1 117 0 228 226 83 48 chr3 162612787 162612871 -55424287 - MER63 DNA MER1_type -312 748 662 421 311 40 61 chr3 162613045 162613268 -55423890 - L1MC4a LINE L1 -1891 5917 5691 2407 84 3 0 chr3 162613268 162613566 -55423592 - AluSp SINE Alu -14 299 1 421 311 40 61 chr3 162613566 162613655 -55423503 - L1MC4a LINE L1 -2117 5691 5612 1623 176 20 20 chr3 162613655 162613950 -55423208 - AluJb SINE Alu -9 303 9 421 311 40 61 chr3 162613950 162614032 -55423126 - L1MC4a LINE L1 -2196 5612 5530 22 70 0 0 chr3 162614633 162614676 -55422482 + AT_rich Low_complexity Low_complexity 1 43 0 13039 173 45 69 chr3 162615382 162616384 -55420774 - L1MA4A LINE L1 -5 7000 5975 225 94 0 0 chr3 162616384 162616416 -55420742 + (TTA)n Simple_repeat Simple_repeat 1 32 0 13039 173 45 69 chr3 162616416 162618569 -55418589 - L1MA4A LINE L1 -1030 5975 3772 2175 136 0 0 chr3 162618569 162618871 -55418287 - AluSx SINE Alu -10 302 1 13039 173 45 69 chr3 162618871 162620447 -55416711 - L1MA4A LINE L1 -3233 3772 2160 1537 221 17 3 chr3 162620447 162620736 -55416422 - AluJo SINE Alu -19 293 1 13039 173 45 69 chr3 162620736 162623187 -55413971 - L1MA4A LINE L1 -4845 2160 22 25 75 0 0 chr3 162623466 162623519 -55413639 + AT_rich Low_complexity Low_complexity 1 53 0 418 194 42 21 chr3 162623635 162623779 -55413379 + L1ME4a LINE L1 5935 6081 -40 974 191 13 0 chr3 162624170 162624373 -55412785 - AluSg/x SINE Alu 0 329 125 1953 142 0 0 chr3 162624378 162624692 -55412466 - AluJb SINE Alu 0 314 1 181 250 150 0 chr3 162625393 162625453 -55411705 - MER5B DNA MER1_type -34 144 76 23 0 0 0 chr3 162626519 162626542 -55410616 + AT_rich Low_complexity Low_complexity 1 23 0 254 185 0 74 chr3 162626543 162626597 -55410561 + L2 LINE L2 3219 3268 -4 30 27 0 0 chr3 162626712 162626749 -55410409 + AT_rich Low_complexity Low_complexity 1 37 0 2155 122 0 0 chr3 162627509 162627827 -55409331 + AluSq SINE Alu 1 318 0 180 68 45 23 chr3 162628000 162628044 -55409114 + (TTGG)n Simple_repeat Simple_repeat 2 46 0 539 302 24 18 chr3 162628084 162628253 -55408905 + MIR3 SINE MIR 37 206 -2 306 275 84 42 chr3 162629166 162629308 -55407850 + MIR SINE MIR 109 256 -6 2371 80 0 22 chr3 162629583 162629896 -55407262 + AluY SINE Alu 1 306 -5 180 77 0 0 chr3 162630401 162630427 -55406731 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 1246 237 79 72 chr3 162630461 162631199 -55405959 + L2 LINE L2 2554 3312 -1 186 143 48 0 chr3 162631609 162631672 -55405486 + (TG)n Simple_repeat Simple_repeat 1 66 0 180 0 0 0 chr3 162631775 162631795 -55405363 + (TG)n Simple_repeat Simple_repeat 1 20 0 22 35 0 0 chr3 162632091 162632120 -55405038 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 162632170 162632192 -55404966 + AT_rich Low_complexity Low_complexity 1 22 0 21 82 0 0 chr3 162633761 162633810 -55403348 + AT_rich Low_complexity Low_complexity 1 49 0 730 289 168 3 chr3 162634632 162634923 -55402235 - LTR16A LTR ERVL -17 433 95 268 197 15 76 chr3 162635207 162635273 -55401885 - L2 LINE L2 -3 3269 3208 872 206 61 0 chr3 162636180 162636345 -55400813 + AluJo SINE Alu 112 286 -26 1308 222 43 9 chr3 162637362 162637686 -55399472 - MER58B DNA MER1_type 0 341 7 452 340 24 89 chr3 162638223 162638605 -55398553 - L2 LINE L2 -3 3269 2913 1128 187 48 0 chr3 162638661 162638870 -55398288 - MER20 DNA MER1_type 0 219 1 586 206 213 0 chr3 162638944 162639099 -55398059 + MER5A DNA MER1_type 1 188 -1 299 264 20 34 chr3 162639108 162639256 -55397902 - Charlie7 DNA MER1_type 0 2612 2467 306 73 0 0 chr3 162639277 162639318 -55397840 + (TG)n Simple_repeat Simple_repeat 2 42 0 207 0 0 0 chr3 162639318 162639341 -55397817 + (TA)n Simple_repeat Simple_repeat 1 23 0 841 167 0 0 chr3 162639499 162639631 -55397527 - FLAM_C SINE Alu -1 132 1 1350 256 67 34 chr3 162640473 162641055 -55396103 - L1MC4 LINE L1 -95 7947 7347 3613 179 27 27 chr3 162641079 162641783 -55395375 - MER21B LTR ERV1 -14 849 146 4216 145 60 35 chr3 162641783 162642223 -55394935 + MER4D LTR ERV1 1 229 -435 2406 96 0 0 chr3 162642223 162642524 -55394634 - AluY SINE Alu -10 301 1 4216 145 60 35 chr3 162642524 162642965 -55394193 + MER4D LTR ERV1 229 657 -7 8855 215 21 57 chr3 162642970 162643098 -55394060 - L1P3 LINE L1 -3191 3270 3139 2413 82 0 0 chr3 162643098 162643391 -55393767 - AluY SINE Alu -18 293 1 8855 215 21 57 chr3 162643391 162646618 -55390540 - L1P3 LINE L1 -3322 3139 10 2229 112 7 0 chr3 162647278 162647572 -55389586 + AluY SINE Alu 1 296 -15 280 312 108 0 chr3 162647736 162647829 -55389329 - MIR SINE MIR -140 122 20 1785 43 0 17 chr3 162648610 162648842 -55388316 - L1PA2 LINE L1 -395 5760 5533 3547 17 0 0 chr3 162648842 162649229 -55387929 + L1PA2 LINE L1 5737 6144 -11 374 174 0 12 chr3 162650082 162650168 -55386990 + C-rich Low_complexity Low_complexity 1 85 0 1321 174 60 64 chr3 162650168 162650466 -55386692 - AluJo SINE Alu -15 297 1 480 269 134 39 chr3 162650995 162651525 -55385633 + L1ME4a LINE L1 5329 5913 -208 387 251 159 42 chr3 162652921 162653042 -55384116 - MLT1L LTR MaLR -5 610 505 2108 126 0 0 chr3 162653042 162653328 -55383830 - AluSx SINE Alu -26 286 1 387 251 159 42 chr3 162653328 162653445 -55383713 - MLT1L LTR MaLR -110 505 344 251 277 85 31 chr3 162653448 162653578 -55383580 - MLT1J2 LTR MaLR -242 208 72 241 217 14 14 chr3 162653760 162653829 -55383329 - L1MC5 LINE L1 -177 7784 7716 2062 99 0 0 chr3 162653869 162654131 -55383027 + AluSc SINE Alu 24 285 -24 2645 62 6 3 chr3 162654653 162654993 -55382165 + L1PA10 LINE L1 5824 6164 -4 23 0 0 0 chr3 162655682 162655705 -55381453 + AT_rich Low_complexity Low_complexity 1 23 0 2178 63 0 63 chr3 162656932 162657268 -55379890 - AluY SINE Alu 0 317 1 581 245 92 27 chr3 162658102 162658286 -55378872 + L2 LINE L2 3080 3275 -38 280 194 149 0 chr3 162658287 162658354 -55378804 + L2 LINE L2 3237 3313 0 1962 144 15 12 chr3 162658919 162659252 -55377906 + MER7A DNA MER2_type 2 333 -13 218 333 42 58 chr3 162659308 162659428 -55377730 - L2 LINE L2 -19 3253 3136 482 224 105 13 chr3 162660307 162660459 -55376699 + MIR SINE MIR 97 262 0 22 35 0 0 chr3 162660891 162660920 -55376238 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr3 162661091 162661114 -55376044 + AT_rich Low_complexity Low_complexity 1 23 0 1135 95 0 6 chr3 162661446 162661604 -55375554 - THE1B LTR MaLR 0 364 208 1029 97 13 0 chr3 162661639 162661793 -55375365 - THE1B-int LTR MaLR -1424 156 1 2507 108 19 8 chr3 162661793 162662153 -55375005 - THE1B LTR MaLR 0 364 1 220 258 16 32 chr3 162662702 162662764 -55374394 + L2 LINE L2 3249 3309 -4 1043 181 140 74 chr3 162663808 162664144 -55373014 - MER93b LTR ERV1 0 373 16 2371 104 0 0 chr3 162664287 162664585 -55372573 + AluSg SINE Alu 1 298 -12 1345 229 27 12 chr3 162665023 162665360 -55371798 + MLT1E3 LTR MaLR 275 616 -8 472 330 0 29 chr3 162667399 162667572 -55369586 + MER5A DNA MER1_type 19 186 -3 378 0 0 0 chr3 162667812 162667854 -55369304 + (CA)n Simple_repeat Simple_repeat 2 43 0 2113 69 35 63 chr3 162669156 162669474 -55367684 - AluY SINE Alu -2 309 1 625 307 0 0 chr3 162670017 162670167 -55366991 + MIR SINE MIR 12 161 -101 760 220 11 66 chr3 162670429 162670715 -55366443 + L1MC5 LINE L1 7641 7910 -51 23 0 0 0 chr3 162670893 162670916 -55366242 + AT_rich Low_complexity Low_complexity 1 23 0 240 167 0 0 chr3 162670995 162671037 -55366121 + L2 LINE L2 3272 3313 0 506 286 0 0 chr3 162673657 162673783 -55363375 + MER117 DNA MER1_type 70 195 -2 4271 161 7 44 chr3 162675612 162676606 -55360552 - L1MB4 LINE L1 -58 6122 5161 349 304 64 5 chr3 162676619 162676813 -55360345 + L2 LINE L2 2605 3081 -232 295 278 65 28 chr3 162676817 162676925 -55360233 - MIR SINE MIR -149 113 2 294 293 78 0 chr3 162676926 162677042 -55360116 + L2 LINE L2 2214 2338 -976 550 340 105 42 chr3 162677046 162677786 -55359372 + L2 LINE L2 2499 3271 -1 303 300 58 25 chr3 162677798 162677918 -55359240 + MIR SINE MIR 85 208 -54 1972 166 0 0 chr3 162677922 162678229 -55358929 + AluSx SINE Alu 1 307 -5 2368 77 0 3 chr3 162678279 162678577 -55358581 + AluY SINE Alu 1 297 -14 2461 74 3 7 chr3 162678577 162678886 -55358272 + AluY SINE Alu 1 308 -3 2179 111 3 16 chr3 162679591 162679906 -55357252 + AluSx SINE Alu 1 311 -1 2283 50 14 7 chr3 162680065 162680346 -55356812 + AluY SINE Alu 1 283 -28 360 0 0 0 chr3 162680346 162680386 -55356772 + (CAAT)n Simple_repeat Simple_repeat 2 41 0 486 194 144 44 chr3 162680650 162680684 -55356474 + MIR SINE MIR 76 105 -157 2144 111 6 29 chr3 162680684 162680999 -55356159 + AluSx SINE Alu 1 308 -4 486 194 144 44 chr3 162680999 162681124 -55356034 + MIR SINE MIR 105 251 -11 28 61 0 0 chr3 162681131 162681180 -55355978 + AT_rich Low_complexity Low_complexity 1 49 0 446 261 119 61 chr3 162682078 162682339 -55354819 - L1ME4a LINE L1 -12 6109 5834 196 299 119 73 chr3 162682528 162682789 -55354369 - L2 LINE L2 -5 3267 2995 469 214 92 61 chr3 162683206 162683435 -55353723 - L1MC5 LINE L1 -211 7750 7515 323 188 94 10 chr3 162683436 162683532 -55353626 - L1MC5 LINE L1 -479 7482 7379 1886 138 7 7 chr3 162683597 162683894 -55353264 + MER1B DNA MER1_type 42 338 -1 1631 233 67 82 chr3 162683896 162684234 -55352924 - L1MC5 LINE L1 -579 7382 7041 3484 58 0 7 chr3 162684234 162684685 -55352473 - LTR7 LTR ERV1 -2 448 1 1631 233 67 82 chr3 162684685 162685468 -55351690 - L1MC5 LINE L1 -920 7041 6278 2031 72 4 11 chr3 162685606 162685868 -55351290 - AluY SINE Alu -8 303 44 1166 281 20 33 chr3 162685910 162686365 -55350793 - L1MC5 LINE L1 -1920 5888 5440 534 289 88 26 chr3 162686391 162686927 -55350231 - L1MC5 LINE L1 -1199 4947 4379 2175 144 0 0 chr3 162686955 162687267 -55349891 + AluSx SINE Alu 1 312 0 299 239 185 8 chr3 162687358 162687488 -55349670 - MIR SINE MIR -7 255 103 206 311 0 0 chr3 162687518 162687563 -55349595 - MIR SINE MIR -110 152 108 326 298 11 11 chr3 162687587 162687681 -55349477 + MIR SINE MIR 58 151 -111 22 56 0 0 chr3 162687876 162687912 -55349246 + AT_rich Low_complexity Low_complexity 1 36 0 581 278 29 5 chr3 162687971 162688180 -55348978 - L1ME4a LINE L1 -195 5926 5713 425 252 179 9 chr3 162688328 162688480 -55348678 - MER112 DNA MER1_type -1 255 130 246 62 0 0 chr3 162688480 162688512 -55348646 + (TG)n Simple_repeat Simple_repeat 2 33 0 425 252 179 9 chr3 162688512 162688577 -55348581 - MER112 DNA MER1_type -126 130 1 309 247 77 69 chr3 162689170 162689559 -55347599 - L1ME4a LINE L1 -1228 4918 4527 255 275 49 35 chr3 162689846 162689988 -55347170 - L1ME4a LINE L1 -1980 4166 4023 250 283 132 107 chr3 162690061 162690379 -55346779 - L2 LINE L2 -49 3264 2939 260 324 50 46 chr3 162690419 162690700 -55346458 - L1ME4a LINE L1 -2242 3904 3623 2289 112 0 0 chr3 162690815 162691118 -55346040 - AluSx SINE Alu -9 303 1 461 268 122 54 chr3 162691195 162691547 -55345611 - L1ME4a LINE L1 -2790 3356 2985 2440 67 3 7 chr3 162691923 162692222 -55344936 - AluY SINE Alu -13 298 1 252 0 0 0 chr3 162692974 162693002 -55344156 + (T)n Simple_repeat Simple_repeat 1 28 0 946 212 22 0 chr3 162693651 162693835 -55343323 + MER5A DNA MER1_type 2 189 0 467 267 124 19 chr3 162693918 162694079 -55343079 - MER5B DNA MER1_type 0 178 1 933 246 183 8 chr3 162695580 162696035 -55341123 - L2 LINE L2 -62 3251 2707 267 31 0 0 chr3 162696360 162696392 -55340766 + (CAA)n Simple_repeat Simple_repeat 2 33 0 187 309 0 0 chr3 162696706 162696748 -55340410 - L2 LINE L2 -76 3196 3155 2547 39 13 3 chr3 162697159 162697465 -55339693 + AluY SINE Alu 1 309 -2 442 278 66 33 chr3 162697530 162697681 -55339477 - MIR3 SINE MIR -6 202 47 1973 129 11 3 chr3 162698339 162698625 -55338533 - AluSx SINE Alu -24 288 1 23 33 0 0 chr3 162698692 162698722 -55338436 + AT_rich Low_complexity Low_complexity 1 30 0 299 310 101 8 chr3 162699810 162699939 -55337219 + L2 LINE L2 3127 3267 -5 822 264 170 24 chr3 162700065 162700464 -55336694 - L2 LINE L2 -226 3087 2748 216 0 0 0 chr3 162700464 162700488 -55336670 + (CAT)n Simple_repeat Simple_repeat 2 25 0 822 264 170 24 chr3 162700488 162700699 -55336459 - L2 LINE L2 -565 2748 2377 351 0 0 0 chr3 162701743 162701782 -55335376 + (TG)n Simple_repeat Simple_repeat 2 40 0 1056 183 102 40 chr3 162703761 162704084 -55333074 - MER2 DNA MER2_type 0 344 2 234 0 0 0 chr3 162705803 162705829 -55331329 + (CA)n Simple_repeat Simple_repeat 2 27 0 2062 196 168 20 chr3 162706963 162707575 -55329583 - L1MC4 LINE L1 -56 7986 7284 26 0 0 0 chr3 162708229 162708255 -55328903 + AT_rich Low_complexity Low_complexity 1 26 0 333 0 0 0 chr3 162709137 162709174 -55327984 + (TG)n Simple_repeat Simple_repeat 2 38 0 2412 97 0 7 chr3 162709489 162709799 -55327359 + AluSg SINE Alu 1 308 -2 4562 159 32 21 chr3 162710324 162711406 -55325752 - L1MB3 LINE L1 0 6183 5087 579 327 24 15 chr3 162711579 162711832 -55325326 - MIR SINE MIR 0 262 5 679 184 0 0 chr3 162711989 162712098 -55325060 - AluSc SINE Alu -76 233 125 226 194 32 0 chr3 162712107 162712169 -55324989 + (TA)n Simple_repeat Simple_repeat 1 64 0 239 118 0 0 chr3 162712169 162712203 -55324955 - AluSc SINE Alu -182 120 87 1842 123 75 31 chr3 162712672 162713031 -55324127 - THE1C LTR MaLR 0 375 1 402 290 152 0 chr3 162713642 162713780 -55323378 + MER5B DNA MER1_type 1 159 -19 209 180 40 0 chr3 162713898 162713948 -55323210 + (TCTG)n Simple_repeat Simple_repeat 3 54 0 14198 122 33 23 chr3 162714346 162714725 -55322433 - Tigger1 DNA MER2_type 0 2418 2044 2027 112 7 3 chr3 162714725 162715050 -55322108 + AluSp SINE Alu 1 326 0 14198 122 33 23 chr3 162715050 162717063 -55320095 - Tigger1 DNA MER2_type -374 2044 1 261 0 0 0 chr3 162719123 162719152 -55318006 + (T)n Simple_repeat Simple_repeat 1 29 0 1824 149 3 37 chr3 162719407 162719534 -55317624 + AluJo SINE Alu 1 131 -181 198 0 0 0 chr3 162719534 162719556 -55317602 + (TAA)n Simple_repeat Simple_repeat 2 23 0 1824 149 3 37 chr3 162719556 162719750 -55317408 + AluJo SINE Alu 131 311 -1 216 278 80 73 chr3 162720281 162720432 -55316726 - MER5A DNA MER1_type -6 183 32 * 358 329 27 27 chr3 162720301 162720450 -55316708 + MER5B DNA MER1_type 27 175 -3 198 296 252 7 chr3 162720450 162720577 -55316581 - MIR3 SINE MIR -40 168 9 246 297 174 0 chr3 162720667 162720805 -55316353 - MIR3 SINE MIR -30 178 17 2492 64 0 32 chr3 162721477 162721790 -55315368 + AluY SINE Alu 1 303 -8 2356 92 0 7 chr3 162722035 162722340 -55314818 + AluSx SINE Alu 1 303 -9 2147 100 0 7 chr3 162722567 162722848 -55314310 + AluSq SINE Alu 1 279 -34 329 301 201 24 chr3 162723439 162723851 -55313307 + L2 LINE L2 2259 2743 -571 312 276 60 17 chr3 162724681 162724797 -55312361 + MIR3 SINE MIR 67 187 -21 1905 213 70 39 chr3 162725420 162725725 -55311433 + L1MC5 LINE L1 7018 7312 -649 1205 179 80 3 chr3 162725725 162726026 -55311132 - MER33 DNA MER1_type 0 324 1 1905 213 70 39 chr3 162726026 162726336 -55310822 + L1MC5 LINE L1 7312 7664 -297 2289 88 0 26 chr3 162726336 162726644 -55310514 - AluSg SINE Alu -9 301 2 1905 213 70 39 chr3 162726644 162726779 -55310379 + L1MC5 LINE L1 7664 7793 -168 228 188 0 0 chr3 162726782 162726830 -55310328 + L1MC5 LINE L1 7840 7887 -74 701 294 179 17 chr3 162727142 162727615 -55309543 - L2 LINE L2 0 3313 2743 536 285 81 90 chr3 162727657 162728078 -55309080 + L2 LINE L2 2851 3267 -5 189 354 24 24 chr3 162728098 162728180 -55308978 - L3 LINE CR1 -881 696 615 397 270 119 6 chr3 162728184 162728343 -55308815 + MER5B DNA MER1_type 2 178 0 419 369 75 21 chr3 162728348 162728589 -55308569 - L3 LINE CR1 -1059 518 265 2379 90 7 0 chr3 162728591 162728901 -55308257 + AluSp SINE Alu 1 312 -1 2347 99 0 10 chr3 162728905 162729217 -55307941 + AluSc SINE Alu 1 309 0 498 262 44 68 chr3 162729808 162730014 -55307144 - MIR SINE MIR -12 250 50 21 0 0 0 chr3 162731487 162731508 -55305650 + AT_rich Low_complexity Low_complexity 1 21 0 519 318 39 21 chr3 162731538 162731871 -55305287 - L1ME4a LINE L1 -295 5826 5488 22 0 0 0 chr3 162732694 162732716 -55304442 + AT_rich Low_complexity Low_complexity 1 22 0 2014 106 57 0 chr3 162733056 162733338 -55303820 - AluSg SINE Alu -12 298 1 238 190 76 25 chr3 162733430 162733509 -55303649 + L1MC5 LINE L1 7790 7872 -89 311 289 118 98 chr3 162733799 162734440 -55302718 + L1M2 LINE L1 533 1383 -5466 1956 151 20 38 chr3 162735733 162736130 -55301028 - MLT1B LTR MaLR 0 390 1 1872 185 0 10 chr3 162736206 162736514 -55300644 - AluJo SINE Alu -7 305 1 2839 10 0 0 chr3 162736931 162737242 -55299916 - AluYa5 SINE Alu 0 311 1 217 277 0 0 chr3 162737509 162737556 -55299602 + C-rich Low_complexity Low_complexity 2 48 0 1758 236 164 36 chr3 162737641 162737958 -55299200 + L2 LINE L2 1902 2177 -1137 2886 141 2 0 chr3 162737958 162738385 -55298773 - MSTA LTR MaLR 0 428 1 1758 236 164 36 chr3 162738385 162738558 -55298600 + L2 LINE L2 2177 2327 -987 2351 98 7 0 chr3 162738558 162738864 -55298294 - AluSq SINE Alu -5 308 1 1758 236 164 36 chr3 162738864 162739085 -55298073 + L2 LINE L2 2327 2705 -609 2321 92 17 0 chr3 162739749 162740043 -55297115 - AluSp SINE Alu -14 299 1 2570 223 54 50 chr3 162740075 162741134 -55296024 + L1ME4a LINE L1 2804 3866 -2280 1212 218 105 49 chr3 162741144 162741432 -55295726 + L1ME4a LINE L1 4840 5110 -1056 2215 112 3 6 chr3 162741432 162741745 -55295413 + AluSx SINE Alu 1 312 0 315 0 0 0 chr3 162741745 162741780 -55295378 + (TA)n Simple_repeat Simple_repeat 2 36 0 1212 218 105 49 chr3 162741780 162742138 -55295020 + L1ME4a LINE L1 5109 5522 -644 2176 109 10 7 chr3 162742255 162742558 -55294600 + AluSg SINE Alu 4 307 -3 2399 79 0 0 chr3 162742965 162743256 -55293902 - AluSc SINE Alu -18 291 1 352 346 89 15 chr3 162743628 162743830 -55293328 + MIR SINE MIR 32 248 -14 202 271 23 62 chr3 162744140 162744269 -55292889 - MIR SINE MIR -46 216 93 325 323 54 0 chr3 162744355 162744485 -55292673 + HAL1b LINE L1 1210 1346 -2 788 201 39 0 chr3 162744558 162744712 -55292446 + MER20 DNA MER1_type 6 165 -54 213 293 61 12 chr3 162744886 162744968 -55292190 - MIR SINE MIR -102 106 21 186 316 38 60 chr3 162745041 162745174 -55291984 - L2 LINE L2 -10 3262 3133 201 147 0 0 chr3 162745192 162745226 -55291932 + (CA)n Simple_repeat Simple_repeat 1 34 0 212 217 72 36 chr3 162746874 162746957 -55290201 - MIR SINE MIR -59 203 118 832 247 57 3 chr3 162747503 162747799 -55289359 + L1ME4a LINE L1 5637 5948 -173 794 205 26 13 chr3 162748613 162748769 -55288389 + FRAM SINE Alu 1 158 -8 23 33 0 0 chr3 162748866 162748896 -55288262 + AT_rich Low_complexity Low_complexity 1 30 0 237 255 216 10 chr3 162749000 162749102 -55288056 + L2 LINE L2 3190 3312 -1 1640 203 21 12 chr3 162752367 162752439 -55284719 - MER2 DNA MER2_type 0 344 274 2306 103 13 3 chr3 162752439 162752741 -55284417 + AluSx SINE Alu 1 305 -7 1640 203 21 12 chr3 162752741 162753008 -55284150 - MER2 DNA MER2_type -70 274 2 884 222 113 1 chr3 162753200 162753420 -55283738 + MIR SINE MIR 1 245 -17 1910 188 0 0 chr3 162754671 162754969 -55282189 - AluJo SINE Alu -14 298 1 224 280 113 48 chr3 162755079 162755247 -55281911 + MIR3 SINE MIR 17 195 -13 813 179 0 0 chr3 162755622 162755745 -55281413 - FLAM_C SINE Alu -10 123 1 406 286 71 0 chr3 162756482 162756608 -55280550 + L2 LINE L2 3138 3272 0 1459 217 33 115 chr3 162757517 162758217 -55278941 + L1MC4 LINE L1 7347 7982 -60 1636 181 0 0 chr3 162758217 162758471 -55278687 - AluJo SINE Alu -30 282 29 1459 217 33 115 chr3 162758471 162758526 -55278632 + L1MC4 LINE L1 7982 8040 -2 216 0 0 0 chr3 162758695 162758719 -55278439 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 228 111 0 0 chr3 162761833 162761869 -55275289 + L2 LINE L2 3270 3305 -8 1024 99 0 0 chr3 162762958 162763089 -55274069 - AluSg SINE Alu -179 131 1 2109 148 3 0 chr3 162763323 162763634 -55273524 + AluSx SINE Alu 1 312 0 1607 65 30 4 chr3 162763816 162764047 -55273111 - L1MA1 LINE L1 -4 6298 6062 258 309 16 49 chr3 162764475 162764598 -55272560 - L2 LINE L2 -188 3084 2966 384 288 139 51 chr3 162764685 162764900 -55272258 - MIR SINE MIR -5 257 24 192 77 0 0 chr3 162967670 162967696 -55069462 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 181 306 141 24 chr3 162967862 162967947 -55069211 + MIR3 SINE MIR 12 106 -102 270 0 0 0 chr3 162968204 162968234 -55068924 + (TTTAA)n Simple_repeat Simple_repeat 3 32 0 855 141 0 30 chr3 162968510 162968645 -55068513 - FLAM_C SINE Alu -2 131 1 1211 188 19 5 chr3 162968682 162968889 -55068269 + MSTB LTR MaLR 217 426 0 9713 170 12 14 chr3 162968889 162969237 -55067921 + MSTB-int LTR MaLR 1 348 -1303 2377 99 3 0 chr3 162969237 162969540 -55067618 + AluSp SINE Alu 1 304 -9 9713 170 12 14 chr3 162969540 162970313 -55066845 + MSTB-int LTR MaLR 348 1121 -530 2519 109 41 16 chr3 162970313 162970679 -55066479 - THE1C LTR MaLR 0 375 1 9713 170 12 14 chr3 162970679 162971210 -55065948 + MSTB-int LTR MaLR 1121 1651 0 626 116 0 0 chr3 162971213 162971308 -55065850 + MSTB LTR MaLR 4 98 -328 838 78 0 0 chr3 162971308 162971423 -55065735 - L1 LINE L1 -1576 4570 4456 2114 144 19 3 chr3 162971425 162971745 -55065413 + MSTB LTR MaLR 102 426 0 278 320 19 29 chr3 162971771 162971874 -55065284 - L2 LINE L2 -195 3077 2976 323 263 35 44 chr3 162972367 162972481 -55064677 + MIR SINE MIR 137 249 -13 220 325 41 16 chr3 162972489 162972612 -55064546 - L2 LINE L2 -836 2478 2353 2634 52 0 3 chr3 162972694 162972999 -55064159 - AluY SINE Alu -7 304 1 28 0 0 0 chr3 162973011 162973039 -55064119 + AT_rich Low_complexity Low_complexity 1 28 0 2267 120 0 0 chr3 162973039 162973347 -55063811 - AluSx SINE Alu 0 312 5 15239 155 58 37 chr3 162973368 162974394 -55062764 - L1MA3 LINE L1 0 7724 6722 2303 80 0 43 chr3 162974394 162974718 -55062440 - AluSg SINE Alu 0 310 1 15239 155 58 37 chr3 162974718 162975895 -55061263 - L1MA3 LINE L1 -1002 6722 5572 2101 117 0 3 chr3 162975895 162976212 -55060946 + AluSq SINE Alu 1 316 0 15239 155 58 37 chr3 162976212 162976787 -55060371 - L1MA3 LINE L1 -2152 5572 5011 2607 39 0 19 chr3 162976787 162977095 -55060063 - AluY SINE Alu -9 302 1 15239 155 58 37 chr3 162977095 162979420 -55057738 - L1MA3 LINE L1 -2713 5011 2421 2084 141 3 0 chr3 162979420 162979725 -55057433 - AluJb SINE Alu -1 311 6 15239 155 58 37 chr3 162979725 162981188 -55055970 - L1MA3 LINE L1 -5303 2421 991 514 155 155 35 chr3 162981191 162981307 -55055851 + MIR SINE MIR 77 206 -56 1271 266 34 71 chr3 162982102 162982295 -55054863 + MLT1L LTR MaLR 103 302 -313 691 198 19 43 chr3 162982295 162982457 -55054701 - FAM SINE Alu -17 158 1 1271 266 34 71 chr3 162982457 162982796 -55054362 + MLT1L LTR MaLR 302 615 0 22 35 0 0 chr3 162983829 162983858 -55053300 + AT_rich Low_complexity Low_complexity 1 29 0 1942 164 0 0 chr3 162983966 162984271 -55052887 + AluJb SINE Alu 1 305 -7 829 138 9 0 chr3 162984510 162984626 -55052532 + FLAM_C SINE Alu 2 118 -15 29 47 0 0 chr3 162984634 162984677 -55052481 + AT_rich Low_complexity Low_complexity 1 43 0 324 252 10 61 chr3 162984749 162984866 -55052292 - L1ME LINE L1 -377 5787 5677 2259 130 0 0 chr3 162985111 162985418 -55051740 - AluSx SINE Alu -5 307 1 724 248 6 6 chr3 162985560 162985717 -55051441 + MIR SINE MIR 72 228 -34 3257 116 81 0 chr3 162986772 162987256 -55049902 - L1MB1 LINE L1 -1 6167 5645 2299 145 21 3 chr3 162987265 162987651 -55049507 + L1MB1 LINE L1 5270 5662 -506 269 229 84 117 chr3 162987750 162987964 -55049194 + L1MC/D LINE L1 5614 5820 -1988 1587 155 0 30 chr3 162987977 162988241 -55048917 - AluJo SINE Alu -19 293 38 2231 114 0 0 chr3 162988244 162988568 -55048590 - AluSx SINE Alu 0 324 1 2077 103 53 0 chr3 162988665 162988947 -55048211 + AluSx SINE Alu 2 298 -14 260 293 138 28 chr3 162989336 162989517 -55047641 - L2 LINE L2 -661 2653 2453 186 220 17 51 chr3 162989889 162989948 -55047210 - MIR SINE MIR -3 259 203 2377 88 0 0 chr3 162989951 162990248 -55046910 + AluSg SINE Alu 1 297 -13 2070 141 0 7 chr3 162990258 162990555 -55046603 + AluSx SINE Alu 1 295 -17 706 242 86 73 chr3 162990603 162991056 -55046102 - MLT1H LTR MaLR -27 522 22 213 313 0 0 chr3 162991082 162991146 -55046012 - MIR SINE MIR -111 151 88 434 269 2 0 chr3 162991223 162991331 -55045827 - MIR SINE MIR -61 147 67 1062 95 0 0 chr3 162991924 162992061 -55045097 + AluSg/x SINE Alu 162 298 -14 1938 136 18 0 chr3 162992275 162992391 -55044767 + AluSx SINE Alu 7 119 -193 202 27 0 54 chr3 162992391 162992428 -55044730 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1938 136 18 0 chr3 162992428 162992590 -55044568 + AluSx SINE Alu 119 290 -22 380 281 49 59 chr3 162993812 162993925 -55043233 - L1ME LINE L1 -310 5811 5699 2221 115 0 3 chr3 162993925 162994220 -55042938 - AluSq SINE Alu -19 294 1 380 281 49 59 chr3 162994220 162994309 -55042849 - L1ME LINE L1 -422 5699 5611 1758 163 7 3 chr3 162994406 162994585 -55042573 - AluJb SINE Alu -26 286 104 222 0 0 73 chr3 162994585 162994626 -55042532 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 1758 163 7 3 chr3 162994626 162994729 -55042429 - AluJb SINE Alu -208 104 3 686 125 17 0 chr3 162994740 162994860 -55042298 + CT-rich Low_complexity Low_complexity 4 125 0 239 264 0 0 chr3 162997100 162997153 -55040005 + MIR SINE MIR 2 54 -208 1837 168 0 7 chr3 162997659 162997950 -55039208 - AluJo SINE Alu -12 300 12 188 234 247 13 chr3 162998763 162998840 -55038318 + MIR SINE MIR 26 120 -142 1994 141 0 3 chr3 162999476 162999782 -55037376 - AluSx SINE Alu 0 305 1 2378 91 3 0 chr3 163000558 163000855 -55036303 + AluSp SINE Alu 1 298 -15 332 316 75 32 chr3 163001507 163001694 -55035464 + MIR SINE MIR 65 259 -3 249 215 38 158 chr3 163001767 163001976 -55035182 - L1MC5 LINE L1 -44 7917 7734 2270 103 0 0 chr3 163002305 163002595 -55034563 - AluSq SINE Alu -19 294 5 1160 155 77 149 chr3 163002769 163003144 -55034014 - MER7A DNA MER2_type 0 346 1 1686 187 13 7 chr3 163003454 163003764 -55033394 + AluJb SINE Alu 1 312 0 185 220 254 34 chr3 163005236 163005354 -55031804 + MIR SINE MIR 47 190 -72 225 320 40 0 chr3 163005725 163005800 -55031358 + L2 LINE L2 3008 3085 -187 1147 212 37 5 chr3 163005807 163006024 -55031134 - MER58A DNA MER1_type 0 224 1 1620 171 13 37 chr3 163006138 163006437 -55030721 - AluJo SINE Alu -18 294 3 1389 209 55 3 chr3 163007599 163007891 -55029267 - MER58B DNA MER1_type 0 341 35 281 47 23 0 chr3 163008027 163008070 -55029088 + (TTTG)n Simple_repeat Simple_repeat 4 47 0 269 218 18 0 chr3 163008070 163008125 -55029033 - MER58B DNA MER1_type -242 99 44 360 301 29 22 chr3 163008144 163008280 -55028878 + MLT1J2 LTR MaLR 259 395 -55 1602 179 102 14 chr3 163008314 163008744 -55028414 + Charlie2 DNA MER1_type 2389 2856 -6 235 328 33 49 chr3 163009396 163009518 -55027640 + MIR3 SINE MIR 9 128 -80 1377 54 0 0 chr3 163009518 163009686 -55027472 - AluY SINE Alu 0 311 144 603 277 137 24 chr3 163010040 163010376 -55026782 + LTR16B LTR ERVL 91 464 0 226 253 0 24 chr3 163010955 163011038 -55026120 + (TATATG)n Simple_repeat Simple_repeat 6 86 0 2027 111 3 3 chr3 163011566 163011854 -55025304 - AluSx SINE Alu -12 300 13 2384 73 0 26 chr3 163012615 163012928 -55024230 - AluY SINE Alu -6 305 1 316 320 38 52 chr3 163013383 163013582 -55023576 + MIR SINE MIR 18 207 -55 26 30 0 0 chr3 163013597 163013630 -55023528 + AT_rich Low_complexity Low_complexity 1 33 0 291 253 55 84 chr3 163014445 163014668 -55022490 - L1ME4a LINE L1 -169 5952 5737 2291 107 0 3 chr3 163014668 163014978 -55022180 + AluSc SINE Alu 1 309 0 291 253 55 84 chr3 163014978 163015027 -55022131 - L1ME4a LINE L1 -384 5737 5688 2346 77 7 7 chr3 163015304 163015603 -55021555 + AluSp SINE Alu 1 299 -14 209 179 0 0 chr3 163015615 163015654 -55021504 + (CAT)n Simple_repeat Simple_repeat 1 39 0 226 227 68 0 chr3 163015762 163015806 -55021352 - L2 LINE L2 -33 3239 3193 1371 93 0 0 chr3 163016488 163016660 -55020498 - AluSg/x SINE Alu -21 291 120 2239 116 0 0 chr3 163016859 163017162 -55019996 + AluSx SINE Alu 1 303 -9 2598 194 54 47 chr3 163017692 163018150 -55019008 + L1MC4 LINE L1 7348 7801 -194 2332 112 0 0 chr3 163018150 163018462 -55018696 + AluSx SINE Alu 1 312 0 2598 194 54 47 chr3 163018462 163018568 -55018590 + L1MC4 LINE L1 7801 7859 -136 255 61 0 0 chr3 163018568 163018601 -55018557 + (TAGA)n Simple_repeat Simple_repeat 1 33 0 2598 194 54 47 chr3 163018601 163018739 -55018419 + L1MC4 LINE L1 7859 7995 0 368 223 59 105 chr3 163020181 163020419 -55016739 + L1ME4a LINE L1 5599 5825 -296 1052 307 62 22 chr3 163020420 163020921 -55016237 + L1MC4a LINE L1 5365 5885 -1923 232 186 115 62 chr3 163021121 163021152 -55016006 + L1ME LINE L1 5811 5839 -282 2376 84 3 0 chr3 163021152 163021448 -55015710 + AluSx SINE Alu 1 297 -15 232 186 115 62 chr3 163021448 163021529 -55015629 + L1ME LINE L1 5839 5929 -192 426 20 0 0 chr3 163021735 163021786 -55015372 + (CA)n Simple_repeat Simple_repeat 2 52 0 222 37 0 0 chr3 163022322 163022349 -55014809 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 1996 124 0 7 chr3 163022873 163023192 -55013966 - AluSx SINE Alu 0 312 1 215 327 19 48 chr3 163023211 163023315 -55013843 + MER5A DNA MER1_type 16 116 -73 200 229 57 71 chr3 163023382 163023452 -55013706 - MER5A DNA MER1_type -120 69 1 212 264 96 88 chr3 163023756 163023881 -55013277 - L2 LINE L2 -4 3309 3184 1682 164 3 17 chr3 163024039 163024348 -55012810 + AluSx SINE Alu 1 305 0 248 333 31 0 chr3 163024817 163024913 -55012245 + MIR SINE MIR 23 121 -141 21 0 0 0 chr3 163024918 163024939 -55012219 + AT_rich Low_complexity Low_complexity 1 21 0 634 173 0 39 chr3 163024945 163025072 -55012086 + L1PB3 LINE L1 6033 6154 0 23 54 0 0 chr3 163025072 163025109 -55012049 + AT_rich Low_complexity Low_complexity 1 37 0 302 323 65 0 chr3 163026205 163026298 -55010860 + MIR SINE MIR 46 144 -64 232 242 0 61 chr3 163026499 163026565 -55010593 - L2 LINE L2 -10 3303 3242 223 273 0 0 chr3 163026588 163026632 -55010526 + L2 LINE L2 3144 3187 -85 309 26 0 0 chr3 163026699 163026737 -55010421 + (CA)n Simple_repeat Simple_repeat 2 39 0 257 344 16 24 chr3 163026764 163026889 -55010269 - MER5A DNA MER1_type -5 184 61 2177 109 0 28 chr3 163026909 163027230 -55009928 - AluSx SINE Alu 0 312 1 1551 153 47 4 chr3 163028156 163028411 -55008747 + AluJb SINE Alu 1 266 -46 2219 117 0 0 chr3 163028443 163028733 -55008425 + AluSx SINE Alu 1 290 -22 226 26 79 0 chr3 163029593 163029631 -55007527 + A-rich Low_complexity Low_complexity 3 43 0 1946 180 80 22 chr3 163029766 163029808 -55007350 - MLT2F LTR ERVL 0 663 625 315 0 0 0 chr3 163029808 163029843 -55007315 + (CA)n Simple_repeat Simple_repeat 2 36 0 1946 180 80 22 chr3 163029843 163030376 -55006782 - MLT2F LTR ERVL -38 625 10 2193 115 10 0 chr3 163030585 163030889 -55006269 + AluSq SINE Alu 3 309 -4 1621 172 0 18 chr3 163031872 163032145 -55005013 - AluJo SINE Alu -33 279 12 2464 84 0 3 chr3 163032360 163032690 -55004468 + AluY SINE Alu 1 329 0 2142 130 0 0 chr3 163033069 163033369 -55003789 - AluSx SINE Alu -12 300 1 21 0 0 0 chr3 163033422 163033443 -55003715 + AT_rich Low_complexity Low_complexity 1 21 0 2113 98 11 0 chr3 163034787 163035064 -55002094 + AluSp SINE Alu 1 280 -33 207 0 0 0 chr3 163035064 163035087 -55002071 + (CA)n Simple_repeat Simple_repeat 1 23 0 2518 46 0 7 chr3 163035142 163035445 -55001713 + AluY SINE Alu 1 301 -10 396 274 280 0 chr3 163036420 163036906 -55000252 + L2 LINE L2 1919 2540 -774 1556 134 0 0 chr3 163037499 163037722 -54999436 - AluSx SINE Alu -8 304 82 2559 65 0 0 chr3 163037722 163038029 -54999129 - AluY SINE Alu -3 308 1 637 130 0 33 chr3 163038029 163038121 -54999037 - AluSx SINE Alu -219 93 5 21 0 0 0 chr3 163038443 163038464 -54998694 + AT_rich Low_complexity Low_complexity 1 21 0 302 270 9 18 chr3 163038779 163038890 -54998268 + (TAGA)n Simple_repeat Simple_repeat 4 113 0 482 239 110 74 chr3 163038893 163039202 -54997956 - MER5C DNA MER1_type -3 321 2 21 0 0 0 chr3 163039529 163039550 -54997608 + AT_rich Low_complexity Low_complexity 1 21 0 592 193 80 43 chr3 163039556 163039743 -54997415 + L1MC4a LINE L1 5731 5924 -1884 222 160 40 40 chr3 163040956 163041006 -54996152 - MIR SINE MIR 0 262 213 * 642 265 30 113 chr3 163040976 163041312 -54995846 - L2 LINE L2 -26 3246 2939 669 94 0 0 chr3 163041438 163041523 -54995635 - AluY SINE Alu -224 86 2 1817 166 17 0 chr3 163041620 163041909 -54995249 + AluSx SINE Alu 6 299 -13 1005 153 21 26 chr3 163043145 163043335 -54993823 + MER53 DNA DNA 1 189 0 241 223 64 43 chr3 163043365 163043459 -54993699 + MLT1K LTR MaLR 26 121 -467 2226 94 3 3 chr3 163043897 163044196 -54992962 + AluSp SINE Alu 1 299 -14 2250 75 4 0 chr3 163044196 163044499 -54992659 + AluY SINE Alu 1 305 0 1301 157 45 73 chr3 163044835 163045175 -54991983 - AluJo SINE Alu 0 336 5 1782 163 3 0 chr3 163045970 163046252 -54990906 - AluJo SINE Alu -29 283 1 1586 165 39 11 chr3 163048025 163048304 -54988854 - AluJb SINE Alu -10 302 16 40 37 0 0 chr3 163048309 163048363 -54988795 + AT_rich Low_complexity Low_complexity 1 54 0 204 274 226 29 chr3 163048451 163048553 -54988605 - MIR SINE MIR -116 146 25 2149 102 10 0 chr3 163049067 163049360 -54987798 + AluSq SINE Alu 1 296 -17 394 278 122 34 chr3 163049543 163049709 -54987449 + MIR SINE MIR 8 185 -68 2262 73 42 3 chr3 163050278 163050567 -54986591 + AluY SINE Alu 1 300 -11 1043 263 140 25 chr3 163050777 163051177 -54985981 - MLT1L LTR MaLR -133 482 37 197 261 45 102 chr3 163051210 163051298 -54985860 + L2 LINE L2 2569 2651 -663 2175 120 0 0 chr3 163051682 163051974 -54985184 - AluSg SINE Alu -16 294 3 351 113 0 0 chr3 163052001 163052063 -54985095 + (GA)n Simple_repeat Simple_repeat 1 62 0 1573 179 3 31 chr3 163052063 163052353 -54984805 - AluJo SINE Alu -30 282 1 231 244 73 114 chr3 163052370 163052493 -54984665 + Charlie2a DNA MER1_type 202 319 -2543 554 206 176 44 chr3 163052511 163052715 -54984443 + Charlie2a DNA MER1_type 539 769 -2093 657 255 20 5 chr3 163052840 163053040 -54984118 + Charlie2a DNA MER1_type 770 972 -1890 918 142 0 35 chr3 163053048 163053189 -54983969 - AluJo SINE Alu -176 136 1 566 152 64 8 chr3 163053189 163053314 -54983844 + Charlie2a DNA MER1_type 958 1089 -1773 1049 181 5 11 chr3 163053320 163053508 -54983650 + AluJo SINE Alu 121 307 -5 26 74 0 0 chr3 163053532 163053586 -54983572 + AT_rich Low_complexity Low_complexity 1 54 0 514 200 132 26 chr3 163053615 163053792 -54983366 + Charlie2a DNA MER1_type 2202 2398 -464 539 305 35 10 chr3 163053792 163053995 -54983163 + MLT1J2 LTR MaLR 3 210 -240 279 185 62 15 chr3 163054031 163054096 -54983062 - MER58 DNA MER1_type -1 2419 2352 1795 196 14 50 chr3 163054219 163054643 -54982515 + L1MB8 LINE L1 5770 6178 0 1715 174 7 3 chr3 163054650 163054943 -54982215 + AluJo SINE Alu 1 294 -18 647 250 145 0 chr3 163055717 163055917 -54981241 + MIR SINE MIR 29 257 -5 707 156 36 6 chr3 163057036 163057203 -54979955 + GA-rich Low_complexity Low_complexity 3 174 0 258 224 0 90 chr3 163058138 163058205 -54978953 + L2 LINE L2 3242 3302 -11 217 292 0 31 chr3 163058278 163058343 -54978815 - L2 LINE L2 -5 3267 3205 1221 112 28 0 chr3 163058356 163058534 -54978624 + AluSg/x SINE Alu 127 309 -1 2265 98 0 7 chr3 163058774 163059071 -54978087 - AluSx SINE Alu -17 295 1 182 277 145 24 chr3 163059146 163059229 -54977929 - MIR SINE MIR -4 258 166 2292 73 22 54 chr3 163060441 163060757 -54976401 + AluSp SINE Alu 1 306 -7 859 115 0 25 chr3 163060856 163060978 -54976180 + AluJb SINE Alu 5 123 -189 490 211 164 0 chr3 163062492 163062666 -54974492 - MIR SINE MIR -24 238 30 590 99 0 0 chr3 163062988 163063069 -54974089 - AluY SINE Alu -228 82 2 974 226 139 28 chr3 163063722 163063822 -54973336 + MER69 DNA AcHobo 7 95 -2431 2231 81 10 29 chr3 163063822 163064130 -54973028 - AluSq SINE Alu -11 302 1 974 226 139 28 chr3 163064130 163064317 -54972841 + MER69 DNA AcHobo 95 326 -2200 201 238 63 0 chr3 163064317 163064380 -54972778 + MIR SINE MIR 125 191 -71 375 209 82 89 chr3 163064971 163065077 -54972081 + MIR SINE MIR 57 163 -99 522 266 47 0 chr3 163065077 163065205 -54971953 + MER94 DNA DNA 1 134 0 375 209 82 89 chr3 163065205 163065256 -54971902 + MIR SINE MIR 163 213 -49 1774 92 9 0 chr3 163065261 163065490 -54971668 + AluSq SINE Alu 1 231 -82 268 291 164 15 chr3 163065685 163065819 -54971339 + MIR3 SINE MIR 42 195 -13 1676 155 0 57 chr3 163065837 163066133 -54971025 - AluJb SINE Alu -22 290 12 2252 107 0 10 chr3 163066225 163066525 -54970633 + AluSx SINE Alu 1 297 -15 194 200 80 0 chr3 163066528 163066578 -54970580 - L2 LINE L2 -15 3298 3245 183 184 0 0 chr3 163066584 163066622 -54970536 + (TG)n Simple_repeat Simple_repeat 1 38 0 26 50 0 0 chr3 163066750 163066790 -54970368 + AT_rich Low_complexity Low_complexity 1 40 0 387 227 182 27 chr3 163066850 163066960 -54970198 - L2 LINE L2 0 3313 3187 2295 101 0 0 chr3 163067300 163067596 -54969562 + AluY SINE Alu 1 296 -15 347 362 119 23 chr3 163067943 163068288 -54968870 + L2 LINE L2 2841 3218 -54 1856 188 61 12 chr3 163068663 163069009 -54968149 - MLT1A1 LTR MaLR -2 363 1 699 328 112 38 chr3 163069217 163069972 -54967186 + L2 LINE L2 2214 3077 -195 342 287 113 0 chr3 163070663 163070778 -54966380 + MIR SINE MIR 66 193 -69 180 0 0 0 chr3 163071039 163071059 -54966099 + (T)n Simple_repeat Simple_repeat 1 20 0 252 0 0 0 chr3 163071900 163071928 -54965230 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 2181 98 18 0 chr3 163071954 163072239 -54964919 + AluSx SINE Alu 1 290 -22 38 22 0 0 chr3 163073168 163073213 -54963945 + AT_rich Low_complexity Low_complexity 1 45 0 1930 153 0 22 chr3 163073416 163073730 -54963428 + AluSx SINE Alu 1 307 -5 743 255 84 30 chr3 163073920 163074183 -54962975 - MLT1F LTR MaLR -171 371 95 229 162 206 29 chr3 163074519 163074587 -54962571 - MIR SINE MIR -5 257 178 1246 225 55 21 chr3 163074711 163075040 -54962118 + MER2 DNA MER2_type 1 340 -5 484 310 46 6 chr3 163076028 163076202 -54960956 + L1ME LINE L1 5602 5782 -339 319 190 1 0 chr3 163076294 163076378 -54960780 + Alu SINE Alu 2 47 -253 670 231 65 17 chr3 163076416 163076604 -54960554 + MIR SINE MIR 21 212 -50 920 148 93 164 chr3 163077269 163077579 -54959579 - AluJb SINE Alu -4 308 21 240 352 23 0 chr3 163077694 163077782 -54959376 + MIR SINE MIR 93 182 -80 339 252 48 29 chr3 163077789 163077892 -54959266 - MIR SINE MIR -1 261 157 413 261 56 3 chr3 163077909 163078102 -54959056 - MIR SINE MIR 0 262 5 405 263 21 0 chr3 163078100 163078195 -54958963 - MIR SINE MIR -114 148 52 * 2190 108 3 13 chr3 163078848 163079163 -54957995 - AluSx SINE Alu 0 312 1 231 295 150 6 chr3 163079338 163079511 -54957647 - L1MC4 LINE L1 -60 7982 7785 2121 104 3 7 chr3 163079654 163079953 -54957205 + AluSc SINE Alu 1 298 -11 22 35 0 0 chr3 163080740 163080769 -54956389 + GC_rich Low_complexity Low_complexity 1 29 0 213 39 0 0 chr3 163081116 163081142 -54956016 + (GGA)n Simple_repeat Simple_repeat 1 26 0 225 65 0 0 chr3 163082462 163082493 -54954665 + (TG)n Simple_repeat Simple_repeat 1 31 0 * 321 26 0 0 chr3 163082492 163082530 -54954628 + (GA)n Simple_repeat Simple_repeat 1 38 0 783 233 125 59 chr3 163083723 163083888 -54953270 - L1MC4 LINE L1 -192 7850 7697 290 45 23 0 chr3 163083888 163083932 -54953226 + (TG)n Simple_repeat Simple_repeat 2 46 0 783 233 125 59 chr3 163083932 163084174 -54952984 - L1MC4 LINE L1 -345 7697 7416 21 36 0 0 chr3 163084181 163084209 -54952949 + AT_rich Low_complexity Low_complexity 1 28 0 513 250 135 10 chr3 163084521 163084713 -54952445 - L1ME3A LINE L1 -15 6155 5940 225 196 0 0 chr3 163086007 163086058 -54951100 + (TA)n Simple_repeat Simple_repeat 1 51 0 2257 84 14 0 chr3 163087986 163088273 -54948885 - AluSq SINE Alu -22 291 1 284 257 0 28 chr3 163088368 163088477 -54948681 + (TTA)n Simple_repeat Simple_repeat 1 106 0 213 288 55 41 chr3 163088492 163088565 -54948593 - L2 LINE L2 -4 3268 3195 218 114 0 23 chr3 163088822 163088866 -54948292 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 253 242 0 0 chr3 163090085 163090147 -54947011 - L1ME3A LINE L1 -299 5822 5761 738 236 118 45 chr3 163090266 163090554 -54946604 - MLT1J LTR MaLR -74 437 129 343 270 101 50 chr3 163090592 163090751 -54946407 - L1ME3A LINE L1 -439 5682 5516 3692 172 69 41 chr3 163091340 163092079 -54945079 - MER21B LTR ERV1 -85 778 19 228 238 76 67 chr3 163092077 163092182 -54944976 - MER21B LTR ERV1 -757 106 1 * 259 170 0 0 chr3 163092412 163092459 -54944699 + L1MC4 LINE L1 7996 8042 0 2010 115 28 14 chr3 163093207 163093486 -54943672 + AluSq SINE Alu 1 286 -27 306 0 0 0 chr3 163093486 163093520 -54943638 + (CA)n Simple_repeat Simple_repeat 2 35 0 493 320 66 10 chr3 163093699 163093896 -54943262 - MIR SINE MIR -6 256 49 526 186 21 0 chr3 163095141 163095238 -54941920 + FLAM_A SINE Alu 1 99 -43 2118 134 0 0 chr3 163095376 163095667 -54941491 + AluSx SINE Alu 1 291 -21 1809 172 3 16 chr3 163095882 163096196 -54940962 - AluJb SINE Alu 0 312 3 2122 125 7 0 chr3 163097731 163098035 -54939123 + AluSq SINE Alu 2 307 -6 868 169 0 0 chr3 163098981 163099111 -54938047 - FLAM_C SINE Alu -2 131 2 1864 89 86 11 chr3 163099740 163100020 -54937138 - AluSp SINE Alu -12 301 1 219 150 25 0 chr3 163100614 163100654 -54936504 + GA-rich Low_complexity Low_complexity 4 44 0 2101 71 4 0 chr3 163101458 163101735 -54935423 - AluSp SINE Alu 0 309 32 2121 102 3 14 chr3 163103534 163103829 -54933329 - AluSx SINE Alu -20 292 1 1757 169 0 29 chr3 163104302 163104610 -54932548 + AluJo SINE Alu 1 299 -13 812 173 0 0 chr3 163105813 163105940 -54931218 - FLAM_C SINE Alu -14 129 3 233 337 209 6 chr3 163106359 163106531 -54930627 - MIR SINE MIR -24 238 32 180 152 0 30 chr3 163107012 163107045 -54930113 + L2 LINE L2 3015 3046 -226 291 54 0 0 chr3 163107405 163107442 -54929716 + (A)n Simple_repeat Simple_repeat 1 37 0 580 255 109 21 chr3 163107537 163107776 -54929382 - L1MC4a LINE L1 -1882 5926 5667 1840 156 3 0 chr3 163108020 163108356 -54928802 - AluSx SINE Alu 0 338 2 21 57 0 0 chr3 163108626 163108661 -54928497 + AT_rich Low_complexity Low_complexity 1 35 0 753 174 0 36 chr3 163108668 163108806 -54928352 + FLAM_A SINE Alu 1 133 0 682 230 148 9 chr3 163109100 163109317 -54927841 + MIR SINE MIR 16 262 0 25 0 0 0 chr3 163109328 163109353 -54927805 + AT_rich Low_complexity Low_complexity 1 25 0 2497 56 0 0 chr3 163109579 163109882 -54927276 + AluY SINE Alu 2 304 -7 315 0 0 0 chr3 163110084 163110119 -54927039 + (T)n Simple_repeat Simple_repeat 1 35 0 660 95 11 11 chr3 163110306 163110401 -54926757 - AluSq SINE Alu -79 234 140 2420 94 0 3 chr3 163110794 163111103 -54926055 + AluSx SINE Alu 1 308 -4 2224 92 0 0 chr3 163111565 163111867 -54925291 - AluSg SINE Alu 0 302 1 461 281 274 27 chr3 163112076 163112404 -54924754 + L2 LINE L2 2856 3264 -49 203 318 98 38 chr3 163114959 163115091 -54922067 + MIR3 SINE MIR 41 180 -28 611 187 37 0 chr3 163116453 163116560 -54920598 - MER81 DNA DNA -2 112 2 2141 96 10 3 chr3 163116860 163117152 -54920006 - AluSp SINE Alu -19 294 1 21 57 0 0 chr3 163117606 163117641 -54919517 + AT_rich Low_complexity Low_complexity 1 35 0 338 214 24 12 chr3 163117789 163117873 -54919285 - MER103 DNA DNA -80 86 2 3326 179 67 50 chr3 163118072 163118290 -54918868 - L1MC3 LINE L1 -21 7764 7551 237 53 26 0 chr3 163118290 163118328 -54918830 + (TTTTG)n Simple_repeat Simple_repeat 2 180 0 1882 164 0 3 chr3 163118328 163118614 -54918544 - AluJb SINE Alu -27 285 1 3326 179 67 50 chr3 163118614 163119159 -54917999 - L1MC3 LINE L1 -233 7552 6987 198 0 0 0 chr3 163120203 163120225 -54916933 + (TG)n Simple_repeat Simple_repeat 1 22 0 264 250 0 0 chr3 163120329 163120389 -54916769 + A-rich Low_complexity Low_complexity 1 60 0 2175 119 0 3 chr3 163120624 163120927 -54916231 - AluSq SINE Alu -11 302 1 332 290 165 28 chr3 163121196 163121372 -54915786 + MIR3 SINE MIR 4 203 -5 388 238 0 11 chr3 163121792 163121899 -54915259 - L1MC3 LINE L1 -398 5766 5662 2091 116 3 0 chr3 163122349 163122634 -54914524 + AluSx SINE Alu 1 286 -26 204 299 13 13 chr3 163123129 163123206 -54913952 - L2 LINE L2 -1 3271 3195 505 251 115 47 chr3 163123475 163123666 -54913492 + MIR3 SINE MIR 2 205 -3 180 286 224 31 chr3 163123701 163123799 -54913359 + L2 LINE L2 3182 3298 -15 21 57 0 0 chr3 163123964 163123999 -54913159 + AT_rich Low_complexity Low_complexity 1 35 0 843 147 0 0 chr3 163124103 163124219 -54912939 + FLAM_C SINE Alu 3 118 -25 37 62 0 0 chr3 163124221 163124286 -54912872 + AT_rich Low_complexity Low_complexity 1 65 0 24 53 0 0 chr3 163124513 163124551 -54912607 + AT_rich Low_complexity Low_complexity 1 38 0 2243 92 7 10 chr3 163124562 163124868 -54912290 - AluSc SINE Alu -4 305 1 201 74 0 0 chr3 163125257 163125284 -54911874 + (CA)n Simple_repeat Simple_repeat 2 28 0 1808 250 55 13 chr3 163126122 163126578 -54910580 - MLT1H1 LTR MaLR -11 544 70 405 0 0 0 chr3 163128044 163128089 -54909069 + (TG)n Simple_repeat Simple_repeat 2 46 0 202 216 20 0 chr3 163129192 163129243 -54907915 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 2193 105 0 7 chr3 163129955 163130250 -54906908 + AluSx SINE Alu 7 299 -13 1085 208 42 35 chr3 163130287 163130575 -54906583 + L1ME1 LINE L1 5857 6146 -20 380 269 90 30 chr3 163130627 163130861 -54906297 - L1ME4a LINE L1 -27 6094 5847 192 77 0 0 chr3 163131387 163131413 -54905745 + (T)n Simple_repeat Simple_repeat 1 26 0 298 236 28 14 chr3 163131956 163132028 -54905130 - L2 LINE L2 -50 3263 3191 2162 130 3 3 chr3 163132130 163132438 -54904720 - AluSx SINE Alu -4 308 1 337 307 62 14 chr3 163133705 163133867 -54903291 - MIR3 SINE MIR -66 142 5 * 410 121 181 133 chr3 163133854 163133971 -54903187 + MIR SINE MIR 65 194 -68 1607 118 0 13 chr3 163133971 163134199 -54902959 - AluSc SINE Alu -2 307 83 410 121 181 133 chr3 163134199 163134247 -54902911 + MIR SINE MIR 194 238 -24 382 268 124 53 chr3 163134325 163134534 -54902624 - MIR SINE MIR -31 231 8 323 314 135 0 chr3 163134693 163134849 -54902309 - L3 LINE CR1 -278 1299 1123 667 239 137 24 chr3 163135918 163136123 -54901035 - MIR SINE MIR 0 262 35 691 271 199 23 chr3 163136285 163136830 -54900328 - L2 LINE L2 -17 3296 2664 2185 118 0 0 chr3 163136934 163137230 -54899928 + AluSx SINE Alu 1 296 -16 36 0 0 0 chr3 163137517 163137553 -54899605 + AT_rich Low_complexity Low_complexity 1 36 0 27 73 0 0 chr3 163137632 163137687 -54899471 + AT_rich Low_complexity Low_complexity 1 55 0 2179 107 7 3 chr3 163137803 163138101 -54899057 - AluY SINE Alu -12 299 1 1788 124 82 0 chr3 163139377 163139659 -54897499 - AluJb SINE Alu -7 305 1 2377 86 26 0 chr3 163140722 163141025 -54896133 + AluSp SINE Alu 1 311 -2 886 167 30 15 chr3 163141039 163141237 -54895921 + L1MD3 LINE L1 7794 7994 -1 231 238 75 12 chr3 163141455 163141535 -54895623 - L1MC4 LINE L1 -2 8040 7956 21 82 0 0 chr3 163141538 163141587 -54895571 + AT_rich Low_complexity Low_complexity 1 49 0 1053 99 82 22 chr3 163142242 163142424 -54894734 - L1PA16 LINE L1 0 6166 5974 607 156 115 0 chr3 163142442 163142538 -54894620 - U6 snRNA snRNA 0 107 1 393 275 99 0 chr3 163143971 163144102 -54893056 + MIR SINE MIR 40 183 -79 2326 104 3 0 chr3 163144621 163144920 -54892238 + AluSp SINE Alu 1 300 -13 2026 107 0 88 chr3 163145086 163145414 -54891744 - AluSx SINE Alu -13 299 1 267 245 75 9 chr3 163146279 163146377 -54890781 - MIR SINE MIR -63 145 46 2333 98 0 16 chr3 163148191 163148509 -54888649 - AluSq SINE Alu 0 313 1 186 118 0 0 chr3 163149697 163149731 -54887427 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 23 0 0 0 chr3 163149761 163149784 -54887374 + AT_rich Low_complexity Low_complexity 1 23 0 990 158 0 7 chr3 163151272 163151424 -54885734 + AluJo SINE Alu 2 152 -160 258 213 64 11 chr3 163151425 163151519 -54885639 + L1M LINE L1 5263 5361 -817 383 206 27 0 chr3 163151870 163151943 -54885215 + MER81 DNA DNA 1 75 -39 2236 91 10 10 chr3 163151950 163152259 -54884899 + AluSc SINE Alu 1 309 0 207 0 0 0 chr3 163152264 163152287 -54884871 + (CAA)n Simple_repeat Simple_repeat 2 24 0 853 172 13 0 chr3 163152341 163152492 -54884666 - MER45A DNA AcHobo 0 178 26 216 343 50 33 chr3 163153038 163153219 -54883939 - L2 LINE L2 -410 2904 2721 2173 111 0 16 chr3 163153952 163154267 -54882891 - AluSg SINE Alu 0 310 1 218 173 0 161 chr3 163154837 163154876 -54882282 + MIR SINE MIR 85 106 -156 2384 90 3 3 chr3 163154876 163155187 -54881971 - AluSp SINE Alu 0 313 3 218 173 0 161 chr3 163155187 163155228 -54881930 + MIR SINE MIR 106 152 -110 387 276 141 19 chr3 163155341 163155497 -54881661 + L2 LINE L2 3100 3274 -39 241 275 77 33 chr3 163156042 163156133 -54881025 + MER5A DNA MER1_type 86 180 -9 310 143 71 31 chr3 163156212 163156310 -54880848 - Charlie7 DNA MER1_type -82 2530 2429 324 261 0 0 chr3 163156920 163156985 -54880173 + MER5A DNA MER1_type 3 67 -122 654 189 16 0 chr3 163156988 163157110 -54880048 + FLAM_C SINE Alu 1 124 -19 2055 128 20 3 chr3 163157116 163157608 -54879550 + AluSq SINE Alu 1 497 0 793 130 11 38 chr3 163157424 163157657 -54879501 + GA-rich Low_complexity Low_complexity 2 229 0 369 179 191 0 chr3 163157669 163157753 -54879405 + MER5A DNA MER1_type 85 184 -5 389 244 13 109 chr3 163157764 163157920 -54879238 - MER5B DNA MER1_type -5 173 33 981 189 0 0 chr3 163157970 163158134 -54879024 - FRAM SINE Alu -12 164 1 398 331 78 6 chr3 163158157 163158323 -54878835 - MIR3 SINE MIR -7 201 24 414 278 31 19 chr3 163158600 163158762 -54878396 + MIR SINE MIR 2 165 -97 2176 95 0 7 chr3 163159138 163159446 -54877712 + AluSx SINE Alu 1 306 0 426 320 0 40 chr3 163159548 163159723 -54877435 + MIR SINE MIR 7 174 -88 1048 173 104 5 chr3 163159723 163160060 -54877098 - MER92A LTR ERV1 0 412 1 222 336 173 0 chr3 163160202 163160306 -54876852 - L2 LINE L2 -18 3254 3133 2350 50 0 11 chr3 163161626 163161939 -54875219 + AluY SINE Alu 1 310 0 2395 95 0 0 chr3 163161947 163162251 -54874907 + AluSx SINE Alu 1 304 -8 926 127 0 42 chr3 163162508 163162650 -54874508 - AluJb SINE Alu -176 136 1 187 340 11 53 chr3 163162760 163162854 -54874304 - MIR SINE MIR -78 130 41 345 282 122 49 chr3 163163638 163163883 -54873275 - HAL1 LINE L1 -2 2505 2243 324 0 0 0 chr3 163163970 163164006 -54873152 + (T)n Simple_repeat Simple_repeat 1 36 0 2330 53 13 57 chr3 163164336 163164654 -54872504 - AluY SINE Alu -7 304 1 1929 155 16 7 chr3 163164853 163165162 -54871996 + AluJo SINE Alu 1 312 0 773 266 43 10 chr3 163165820 163166027 -54871131 + MIR SINE MIR 1 214 -48 631 240 171 5 chr3 163166759 163166976 -54870182 + HAL1 LINE L1 1639 1891 -616 1350 122 0 26 chr3 163218495 163218684 -54818474 - AluSg SINE Alu -126 184 1 315 0 0 0 chr3 163218704 163218739 -54818419 + (TG)n Simple_repeat Simple_repeat 1 35 0 316 293 66 33 chr3 163219474 163219686 -54817472 + MLT1K LTR MaLR 329 547 -41 651 203 131 0 chr3 163219815 163219968 -54817190 + MER5B DNA MER1_type 6 178 0 184 322 81 0 chr3 163220166 163220253 -54816905 - L2 LINE L2 -1 3312 3219 1471 316 180 33 chr3 163220432 163220532 -54816626 - L2 LINE L2 -376 2938 2854 1584 112 0 35 chr3 163220532 163220764 -54816394 + AluSg/x SINE Alu 87 310 0 1471 316 180 33 chr3 163220764 163222220 -54814938 - L2 LINE L2 -460 2854 1154 213 274 48 16 chr3 163222254 163222316 -54814842 - L2 LINE L2 0 3313 3250 1937 145 14 0 chr3 163222335 163222632 -54814526 - AluJb SINE Alu -11 301 1 556 196 10 0 chr3 163223838 163223935 -54813223 + MER2 DNA MER2_type 1 98 -247 321 206 82 0 chr3 163223935 163224008 -54813150 + Tigger5 DNA MER2_type 1 79 -2244 246 222 32 0 chr3 163224014 163224077 -54813081 - Tigger5 DNA MER2_type -15 2308 2244 644 210 174 9 chr3 163224090 163224309 -54812849 + MER2 DNA MER2_type 91 345 0 2183 93 10 3 chr3 163224496 163224785 -54812373 - AluSq SINE Alu -12 301 11 2172 121 61 0 chr3 163224934 163225297 -54811861 + L1MB7 LINE L1 5784 6168 -16 267 139 194 0 chr3 163227878 163227950 -54809208 - L1ME4a LINE L1 -69 6052 5967 481 302 99 22 chr3 163228017 163228249 -54808909 - MIR SINE MIR 0 262 13 232 139 0 0 chr3 163230463 163230499 -54806659 + tRNA-Lys-AAG tRNA tRNA 3 38 -38 2115 107 0 17 chr3 163230578 163230905 -54806253 - AluSc SINE Alu 0 322 1 21 0 0 0 chr3 163230972 163230993 -54806165 + AT_rich Low_complexity Low_complexity 1 21 0 621 266 125 25 chr3 163231327 163232152 -54805006 + L1ME3A LINE L1 4963 5897 -273 2294 124 3 0 chr3 163232226 163232533 -54804625 + AluSg SINE Alu 1 308 -2 637 250 23 12 chr3 163232822 163232994 -54804164 + L1MC4 LINE L1 6796 6969 -1073 253 232 174 0 chr3 163234785 163234854 -54802304 + L2 LINE L2 3227 3307 -6 392 237 118 32 chr3 163234902 163234995 -54802163 - L2 LINE L2 -23 3249 3149 205 254 179 15 chr3 163235121 163235188 -54801970 + L2 LINE L2 3236 3313 0 290 317 10 0 chr3 163235666 163235770 -54801388 - Charlie8 DNA MER1_type -2218 199 95 1911 277 107 31 chr3 163235786 163235965 -54801193 - L2 LINE L2 -756 2558 2394 1959 128 79 17 chr3 163235965 163236029 -54801129 - THE1C LTR MaLR 0 375 316 2229 97 3 38 chr3 163236029 163236349 -54800809 + AluY SINE Alu 1 309 -2 1959 128 79 17 chr3 163236349 163236637 -54800521 - THE1C LTR MaLR -59 316 1 1911 277 107 31 chr3 163236637 163237194 -54799964 - L2 LINE L2 -920 2394 1766 1270 123 0 0 chr3 163237194 163237365 -54799793 + AluSx SINE Alu 1 171 -141 2134 125 3 0 chr3 163237766 163238061 -54799097 - AluSg SINE Alu -14 296 1 7154 61 3 1 chr3 163239103 163240516 -54796642 + L1P1 LINE L1 4329 5742 -413 356 174 12 12 chr3 163240639 163240725 -54796433 + L1MA9 LINE L1 6227 6312 0 187 364 57 0 chr3 163240893 163240981 -54796177 - MIR SINE MIR -80 182 90 319 258 125 16 chr3 163241053 163241181 -54795977 + MIR SINE MIR 66 207 -55 306 0 0 0 chr3 163241384 163241418 -54795740 + (TG)n Simple_repeat Simple_repeat 2 35 0 1118 179 113 39 chr3 163241420 163241558 -54795600 - AluJb SINE Alu -36 276 150 180 0 0 0 chr3 163241558 163241578 -54795580 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1118 179 113 39 chr3 163241578 163241696 -54795462 - AluJb SINE Alu -162 150 1 596 249 94 15 chr3 163242052 163242253 -54794905 - MLT1I LTR MaLR -192 217 1 8944 38 7 10 chr3 163243059 163244265 -54792893 - L1P LINE L1 -3594 2552 1351 336 324 117 28 chr3 163244570 163244749 -54792409 - MIR SINE MIR -62 200 6 21 0 0 0 chr3 163245308 163245329 -54791829 + AT_rich Low_complexity Low_complexity 1 21 0 362 351 70 55 chr3 163245497 163245768 -54791390 + L2 LINE L2 2976 3250 -22 470 237 21 0 chr3 163247075 163247172 -54789986 + MIR SINE MIR 70 168 -94 318 191 108 119 chr3 163247431 163247682 -54789476 - MER34 LTR ERV1 0 542 295 487 328 59 24 chr3 163248064 163248317 -54788841 + MIR SINE MIR 1 262 0 987 134 0 7 chr3 163249068 163249217 -54787941 + AluSx SINE Alu 159 306 -6 2156 101 14 0 chr3 163249415 163249711 -54787447 + AluSx SINE Alu 1 300 -12 1236 125 0 5 chr3 163250305 163250497 -54786661 - L1PA15 LINE L1 -251 5914 5724 26 0 0 0 chr3 163250519 163250545 -54786613 + AT_rich Low_complexity Low_complexity 1 26 0 3880 164 23 5 chr3 163250562 163251330 -54785828 - L1PB1 LINE L1 0 6853 6072 1147 174 39 32 chr3 163251441 163251919 -54785239 + L1M1 LINE L1 3356 3829 -3736 785 217 17 0 chr3 163251916 163252091 -54785067 + L1M1 LINE L1 4058 4235 -3330 * 1066 166 40 6 chr3 163252120 163252295 -54784863 + AluJb SINE Alu 1 181 -131 359 192 0 13 chr3 163252302 163252380 -54784778 + AluSg/x SINE Alu 219 295 -5 14223 189 48 19 chr3 163252571 163254859 -54782299 - L1PB1 LINE L1 -1865 4983 2763 692 209 0 8 chr3 163254859 163254988 -54782170 - FLAM_A SINE Alu -4 129 2 14223 189 48 19 chr3 163254988 163255574 -54781584 - L1PB1 LINE L1 -4085 2763 2196 2292 121 0 0 chr3 163255574 163255881 -54781277 + AluSq SINE Alu 1 307 -6 14223 189 48 19 chr3 163255881 163257766 -54779392 - L1PB1 LINE L1 -4652 2196 79 2346 41 0 0 chr3 163257767 163258037 -54779121 + AluY SINE Alu 1 270 -41 664 289 94 0 chr3 163258072 163258273 -54778885 + MIR SINE MIR 38 257 -5 415 195 333 8 chr3 163258734 163258857 -54778301 + MER5A DNA MER1_type 27 189 0 795 163 102 7 chr3 163259974 163260121 -54777037 - MER5B DNA MER1_type -4 174 14 2115 143 18 26 chr3 163260310 163260701 -54776457 + MLT1B LTR MaLR 3 390 0 2180 93 0 4 chr3 163261197 163261476 -54775682 - AluSg SINE Alu -9 301 24 1984 121 29 0 chr3 163262387 163262667 -54774491 - AluSx SINE Alu -24 288 1 24 0 0 0 chr3 163262747 163262771 -54774387 + AT_rich Low_complexity Low_complexity 1 24 0 383 280 0 21 chr3 163262830 163262973 -54774185 - L1ME LINE L1 -443 5727 5588 1417 136 0 41 chr3 163262992 163263248 -54773910 + AluSg/x SINE Alu 73 319 0 362 197 129 11 chr3 163263258 163263373 -54773785 - L1MD3 LINE L1 -463 7520 7220 567 198 8 16 chr3 163263374 163263495 -54773663 - MLT1F1 LTR MaLR -443 124 5 1271 212 72 47 chr3 163263497 163263716 -54773442 - L1MD3 LINE L1 -718 7277 7065 189 0 0 0 chr3 163263716 163263737 -54773421 + (TATG)n Simple_repeat Simple_repeat 4 24 0 1271 212 72 47 chr3 163263737 163263885 -54773273 - L1MD3 LINE L1 -930 7065 6897 2292 109 0 3 chr3 163263885 163264197 -54772961 - AluY SINE Alu 0 311 1 1271 212 72 47 chr3 163264197 163264229 -54772929 - L1MD3 LINE L1 -1098 6897 6867 241 128 0 0 chr3 163264235 163264274 -54772884 - L1MB7 LINE L1 -12 6172 6134 248 133 0 22 chr3 163264298 163264343 -54772815 - L1MD3 LINE L1 -464 7531 7488 * 603 244 33 17 chr3 163264336 163264516 -54772642 - L1MB8 LINE L1 -69 6109 5927 * 1490 227 34 52 chr3 163264498 163264629 -54772529 - L1MD3 LINE L1 -1108 6887 6755 1739 109 25 0 chr3 163264629 163264891 -54772267 + AluSx SINE Alu 38 305 0 1490 227 34 52 chr3 163264891 163265198 -54771960 - L1MD3 LINE L1 -1240 6755 6456 22 56 0 0 chr3 163265198 163265234 -54771924 + AT_rich Low_complexity Low_complexity 1 36 0 1141 258 58 36 chr3 163265987 163266432 -54770726 + MLT1C LTR MaLR 6 460 -7 536 204 84 0 chr3 163266435 163266577 -54770581 - L1MC4a LINE L1 -1373 6435 6282 805 211 80 0 chr3 163266608 163266821 -54770337 - L1ME2 LINE L1 -273 5891 5662 1418 209 8 0 chr3 163267252 163267510 -54769648 + AluSx SINE Alu 40 299 -13 543 275 96 12 chr3 163267968 163268208 -54768950 - MIR SINE MIR -1 261 2 234 300 14 0 chr3 163268945 163269015 -54768143 + MIR3 SINE MIR 124 194 -14 614 65 0 0 chr3 163269349 163269426 -54767732 + AluSc SINE Alu 6 82 -227 232 369 10 0 chr3 163270127 163270230 -54766928 + CT-rich Low_complexity Low_complexity 5 108 0 766 233 71 73 chr3 163270415 163270715 -54766443 + MLT1H1 LTR MaLR 1 319 -248 2331 67 37 3 chr3 163270715 163271012 -54766146 + AluSc SINE Alu 3 309 0 766 233 71 73 chr3 163271012 163271256 -54765902 + MLT1H1 LTR MaLR 319 562 -5 361 297 51 22 chr3 163271287 163271425 -54765733 - L2 LINE L2 0 3313 3172 575 284 78 5 chr3 163271444 163271662 -54765496 + L2 LINE L2 1342 1575 -1739 1330 277 42 23 chr3 163271709 163272189 -54764969 + L2 LINE L2 2181 2669 -645 445 196 131 26 chr3 163272836 163272989 -54764169 + MER112 DNA MER1_type 2 170 -90 645 203 117 15 chr3 163272990 163273187 -54763971 + L1MC5 LINE L1 7696 7912 -49 301 233 27 0 chr3 163273212 163273285 -54763873 + MER112 DNA MER1_type 178 252 -8 24 0 0 0 chr3 163275798 163275822 -54761336 + AT_rich Low_complexity Low_complexity 1 24 0 2374 93 0 3 chr3 163276372 163276683 -54760475 - AluSg SINE Alu 0 310 1 7084 175 3 15 chr3 163276722 163277497 -54759661 - L1PA13 LINE L1 -7 6156 5373 3269 91 13 7 chr3 163277497 163277947 -54759211 - MLT2A2 LTR ERVL 0 453 1 7084 175 3 15 chr3 163277947 163279364 -54757794 - L1PA13 LINE L1 -790 5373 3968 1051 186 65 0 chr3 163279364 163279595 -54757563 + ORSL DNA AcHobo 11 256 -19 24 0 0 0 chr3 163279887 163279911 -54757247 + AT_rich Low_complexity Low_complexity 1 24 0 752 199 18 6 chr3 163280449 163280615 -54756543 + MER58B DNA MER1_type 1 168 -173 976 197 41 5 chr3 163280615 163280833 -54756325 + MER58B DNA MER1_type 116 341 0 2024 120 34 3 chr3 163280904 163281195 -54755963 - AluSq SINE Alu -13 300 1 805 282 43 13 chr3 163281252 163281486 -54755672 - MIR SINE MIR -16 246 6 1191 183 171 37 chr3 163281568 163281890 -54755268 - MLT1A1 LTR MaLR 0 365 1 189 121 0 0 chr3 163283854 163283887 -54753271 + (ATG)n Simple_repeat Simple_repeat 1 33 0 6344 128 13 17 chr3 163286053 163287451 -54749707 - L1MA4A LINE L1 -1 6302 4910 14223 178 44 17 chr3 163289027 163293140 -54744018 - L1PB4 LINE L1 0 6858 2857 692 209 0 8 chr3 163293140 163293269 -54743889 - FLAM_A SINE Alu -4 129 2 14223 178 44 17 chr3 163293269 163293855 -54743303 - L1PB4 LINE L1 -4001 2857 2288 2292 121 0 0 chr3 163293855 163294162 -54742996 + AluSq SINE Alu 1 307 -6 14223 178 44 17 chr3 163294162 163296047 -54741111 - L1PB4 LINE L1 -4570 2288 79 2346 41 0 0 chr3 163296048 163296318 -54740840 + AluY SINE Alu 1 270 -41 664 289 94 0 chr3 163296353 163296554 -54740604 + MIR SINE MIR 38 257 -5 415 195 333 8 chr3 163297015 163297138 -54740020 + MER5A DNA MER1_type 27 189 0 795 163 102 7 chr3 163298255 163298402 -54738756 - MER5B DNA MER1_type -4 174 14 2115 143 18 26 chr3 163298591 163298982 -54738176 + MLT1B LTR MaLR 3 390 0 2180 93 0 4 chr3 163299478 163299757 -54737401 - AluSg SINE Alu -9 301 24 1984 121 29 0 chr3 163300668 163300948 -54736210 - AluSx SINE Alu -24 288 1 24 0 0 0 chr3 163301028 163301052 -54736106 + AT_rich Low_complexity Low_complexity 1 24 0 383 280 0 21 chr3 163301111 163301254 -54735904 - L1ME LINE L1 -443 5727 5588 1417 136 0 41 chr3 163301273 163301529 -54735629 + AluSg/x SINE Alu 73 319 0 362 197 129 11 chr3 163301539 163301654 -54735504 - L1MD3 LINE L1 -463 7520 7220 567 198 8 16 chr3 163301655 163301776 -54735382 - MLT1F1 LTR MaLR -443 124 5 1630 176 73 40 chr3 163301778 163301994 -54735164 - L1MD3 LINE L1 -718 7277 7070 189 0 0 0 chr3 163301994 163302015 -54735143 + (TATG)n Simple_repeat Simple_repeat 4 24 0 1630 176 73 40 chr3 163302015 163302163 -54734995 - L1MD3 LINE L1 -925 7070 6896 2230 119 0 3 chr3 163302163 163302475 -54734683 - AluY SINE Alu 0 311 1 1630 176 73 40 chr3 163302475 163302507 -54734651 - L1MD3 LINE L1 -1099 6896 6867 241 128 0 0 chr3 163302513 163302552 -54734606 - L1MB7 LINE L1 -12 6172 6134 248 133 0 22 chr3 163302576 163302621 -54734537 - L1MD3 LINE L1 -464 7531 7488 * 603 244 33 17 chr3 163302614 163302794 -54734364 - L1MB8 LINE L1 -69 6109 5927 * 1563 226 29 52 chr3 163302776 163302909 -54734249 - L1MD3 LINE L1 -1108 6887 6753 1739 109 25 0 chr3 163302909 163303171 -54733987 + AluSx SINE Alu 38 305 0 1563 226 29 52 chr3 163303171 163303478 -54733680 - L1MD3 LINE L1 -1242 6753 6456 22 56 0 0 chr3 163303478 163303514 -54733644 + AT_rich Low_complexity Low_complexity 1 36 0 1141 258 58 36 chr3 163304270 163304715 -54732443 + MLT1C LTR MaLR 6 460 -7 536 204 84 0 chr3 163304718 163304860 -54732298 - L1MC4a LINE L1 -1373 6435 6282 822 215 75 0 chr3 163304891 163305105 -54732053 - L1ME2 LINE L1 -273 5891 5662 1336 206 80 54 chr3 163307047 163307585 -54729573 - L1ME2 LINE L1 -972 5174 4623 205 156 0 0 chr3 163307616 163307648 -54729510 + (CA)n Simple_repeat Simple_repeat 1 32 0 488 273 0 0 chr3 163307674 163307813 -54729345 - L1ME3A LINE L1 -14 6156 6018 1095 233 72 27 chr3 163307838 163308281 -54728877 - L1ME3A LINE L1 -278 5892 5430 4118 170 42 16 chr3 163308285 163309188 -54727970 - L1MB3 LINE L1 -4 6179 5255 1900 146 133 23 chr3 163309188 163309572 -54727586 - MSTA LTR MaLR 0 428 3 4118 170 42 16 chr3 163309572 163309634 -54727524 - L1MB3 LINE L1 -928 5255 5196 310 203 51 25 chr3 163311782 163311861 -54725297 - MLT1L LTR MaLR -534 81 1 693 230 37 9 chr3 163312081 163312298 -54724860 + L1ME LINE L1 5309 5531 -635 547 267 38 107 chr3 163312490 163313198 -54723960 + L1MEd LINE L1 814 1472 -4900 338 241 89 35 chr3 163313203 163313336 -54723822 + L1MEd LINE L1 1388 1503 -4881 831 246 47 24 chr3 163313808 163314266 -54722892 + L1M1 LINE L1 3486 3954 -3611 2142 94 17 10 chr3 163315062 163315361 -54721797 + AluSg SINE Alu 1 301 -9 249 172 149 46 chr3 163315866 163315953 -54721205 - L1ME3A LINE L1 -10 6160 6065 304 284 88 140 chr3 163317001 163317708 -54719450 + L1M2 LINE L1 526 1195 -5654 312 299 125 73 chr3 163317876 163318468 -54718690 - L1M2 LINE L1 -5481 1368 709 21 0 0 0 chr3 163318534 163318555 -54718603 + AT_rich Low_complexity Low_complexity 1 21 0 228 256 135 47 chr3 163325104 163325319 -54711839 + L1ME LINE L1 5636 5869 -252 24 0 0 0 chr3 163325850 163325874 -54711284 + AT_rich Low_complexity Low_complexity 1 24 0 2455 77 0 3 chr3 163327981 163328291 -54708867 - AluY SINE Alu -2 309 1 306 256 196 15 chr3 163328964 163329097 -54708061 + MIR SINE MIR 36 192 -70 394 162 0 0 chr3 163329262 163329357 -54707801 - AluSp/q SINE Alu 0 313 219 1672 210 39 29 chr3 163330070 163330455 -54706703 + MLT1D LTR MaLR 117 505 0 520 311 55 6 chr3 163330713 163330896 -54706262 + MIR SINE MIR 41 232 -30 927 198 86 0 chr3 163331591 163331788 -54705370 + MER20 DNA MER1_type 5 218 -1 750 284 145 22 chr3 163332185 163332586 -54704572 + L2 LINE L2 2460 2909 -405 45 19 0 0 chr3 163333291 163333343 -54703815 + AT_rich Low_complexity Low_complexity 1 52 0 669 231 70 47 chr3 163334692 163334948 -54702210 - MIR SINE MIR 0 262 1 2223 113 3 0 chr3 163335697 163335990 -54701168 + AluSp SINE Alu 1 294 -19 205 203 62 0 chr3 163336552 163336616 -54700542 + GA-rich Low_complexity Low_complexity 2 69 0 493 303 63 40 chr3 163336672 163336847 -54700311 + MIR SINE MIR 32 210 -52 1582 161 173 95 chr3 163337333 163337819 -54699339 + L1MCa LINE L1 178 701 -5725 1852 169 0 7 chr3 163337820 163338127 -54699031 + AluJo SINE Alu 1 305 -7 22 0 0 0 chr3 163339137 163339159 -54697999 + AT_rich Low_complexity Low_complexity 1 22 0 441 291 123 30 chr3 163339305 163339508 -54697650 + MIR SINE MIR 27 248 -14 214 287 81 0 chr3 163340478 163340565 -54696593 + L2 LINE L2 3219 3312 -1 27 29 0 0 chr3 163340645 163340679 -54696479 + AT_rich Low_complexity Low_complexity 1 34 0 1968 122 66 12 chr3 163341770 163342090 -54695068 - MER1B DNA MER1_type 0 337 1 377 252 175 7 chr3 163343315 163343458 -54693700 - MIR SINE MIR -44 218 52 422 239 188 61 chr3 163343930 163344143 -54693015 + MIR SINE MIR 2 241 -21 394 162 0 0 chr3 163344690 163344785 -54692373 - AluSp/q SINE Alu 0 313 219 1672 210 39 29 chr3 163345505 163345890 -54691268 + MLT1D LTR MaLR 117 505 0 520 311 55 6 chr3 163346148 163346331 -54690827 + MIR SINE MIR 41 232 -30 927 198 86 0 chr3 163347026 163347223 -54689935 + MER20 DNA MER1_type 5 218 -1 607 305 148 22 chr3 163347620 163348020 -54689138 + L2 LINE L2 2460 2909 -405 45 19 0 0 chr3 163348725 163348777 -54688381 + AT_rich Low_complexity Low_complexity 1 52 0 669 231 70 47 chr3 163350124 163350380 -54686778 - MIR SINE MIR 0 262 1 2223 113 3 0 chr3 163351129 163351422 -54685736 + AluSp SINE Alu 1 294 -19 205 203 62 0 chr3 163351984 163352048 -54685110 + GA-rich Low_complexity Low_complexity 2 69 0 493 303 63 40 chr3 163352104 163352279 -54684879 + MIR SINE MIR 32 210 -52 5080 158 81 72 chr3 163352765 163353252 -54683906 + L1MCa LINE L1 178 659 -5767 1657 179 0 4 chr3 163353252 163353526 -54683632 + AluJo SINE Alu 1 273 -39 5080 158 81 72 chr3 163353526 163354267 -54682891 + L1MCa LINE L1 659 1418 -5008 3901 223 110 46 chr3 163354280 163354986 -54682172 + L1MB2 LINE L1 1175 1834 -4548 1902 152 0 3 chr3 163354986 163355283 -54681875 - AluJb SINE Alu -16 296 1 3901 223 110 46 chr3 163355283 163355781 -54681377 + L1MB2 LINE L1 1834 2299 -4083 2153 101 0 10 chr3 163355781 163356079 -54681079 + AluSg SINE Alu 3 297 -13 3901 223 110 46 chr3 163356079 163356330 -54680828 + L1MB2 LINE L1 2299 2532 -3850 1863 142 24 3 chr3 163356330 163356625 -54680533 + AluSq SINE Alu 1 301 -12 3901 223 110 46 chr3 163356625 163357683 -54679475 + L1MB2 LINE L1 2532 3845 -2537 7353 98 1 3 chr3 163357709 163358727 -54678431 - L1P LINE L1 -4756 1390 375 6935 47 12 11 chr3 163358727 163360220 -54676938 + L1PA5 LINE L1 4660 6154 0 1657 201 24 3 chr3 163360238 163360577 -54676581 + L1MC1 LINE L1 5885 6230 -103 1355 143 18 0 chr3 163360578 163360801 -54676357 + L1MC1 LINE L1 6107 6333 0 6478 193 48 33 chr3 163360822 163362112 -54675046 + L1MB2 LINE L1 3858 5127 -1280 270 0 0 0 chr3 163362112 163362142 -54675016 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 6478 193 48 33 chr3 163362142 163363350 -54673808 + L1MB2 LINE L1 5127 6405 -2 3198 160 68 28 chr3 163363361 163364127 -54673031 + L1MCa LINE L1 1741 2535 -3891 228 122 0 0 chr3 163364718 163364759 -54672399 + (ATG)n Simple_repeat Simple_repeat 3 43 0 1775 226 28 97 chr3 163365361 163365559 -54671599 + L1MCa LINE L1 2528 2738 -3688 2083 112 24 7 chr3 163365559 163365855 -54671303 + AluSx SINE Alu 1 301 -11 1775 226 28 97 chr3 163365855 163366443 -54670715 + L1MCa LINE L1 2738 3260 -3166 5397 208 77 24 chr3 163366451 163368913 -54668245 + L1MB4 LINE L1 112 2690 -3736 3598 180 46 28 chr3 163368910 163369114 -54668044 + L1MB4 LINE L1 2919 3118 -3308 * 1360 161 150 8 chr3 163369114 163369374 -54667784 + AluJb SINE Alu 1 297 -5 3598 180 46 28 chr3 163369374 163370148 -54667010 + L1MB4 LINE L1 3118 3877 -2549 2333 116 0 0 chr3 163370148 163370458 -54666700 + AluSx SINE Alu 1 310 -2 3598 180 46 28 chr3 163370458 163370595 -54666563 + L1MB4 LINE L1 3877 4677 -1749 427 228 0 0 chr3 163370590 163370669 -54666489 + THE1C-int LTR MaLR 837 915 -736 * 5352 186 60 12 chr3 163370669 163371701 -54665457 + THE1C-int LTR MaLR 553 1634 -17 4906 115 23 7 chr3 163371703 163372474 -54664684 + L1MA4 LINE L1 5512 6295 -5 4323 241 34 75 chr3 163372474 163372669 -54664489 + L1MCa LINE L1 3248 3450 -2976 1782 155 19 26 chr3 163372669 163372978 -54664180 + AluJb SINE Alu 1 307 -5 4323 241 34 75 chr3 163372978 163373808 -54663350 + L1MCa LINE L1 3450 4313 -2113 2211 107 0 10 chr3 163373808 163374107 -54663051 + AluSx SINE Alu 6 301 -11 4323 241 34 75 chr3 163374107 163374561 -54662597 + L1MCa LINE L1 4313 4784 -1642 1961 125 52 33 chr3 163374561 163374929 -54662229 + THE1C LTR MaLR 1 375 0 4323 241 34 75 chr3 163374929 163375811 -54661347 + L1MCa LINE L1 4784 5386 -1040 805 194 6 0 chr3 163375843 163376003 -54661155 - L1 LINE L1 -1511 4635 4475 4419 165 68 3 chr3 163376049 163377042 -54660116 + L1MB4 LINE L1 5391 6460 0 687 260 135 46 chr3 163377080 163377496 -54659662 + L1ME3A LINE L1 4628 5080 -1066 2176 95 3 0 chr3 163377522 163377834 -54659324 + AluY SINE Alu 1 313 0 1172 264 75 55 chr3 163378011 163378727 -54658431 + L1ME3A LINE L1 5336 6066 -104 3911 242 159 20 chr3 163378842 163380195 -54656963 + L2 LINE L2 1239 2779 -535 2284 95 0 3 chr3 163380243 163380547 -54656611 - AluSc SINE Alu -6 303 1 770 203 0 0 chr3 163380643 163380776 -54656382 + FLAM_A SINE Alu 1 133 0 21 57 0 0 chr3 163380959 163380994 -54656164 + AT_rich Low_complexity Low_complexity 1 35 0 317 293 98 8 chr3 163381232 163381365 -54655793 + MIR SINE MIR 61 205 -57 604 176 53 30 chr3 163381480 163381611 -54655547 - MER97a DNA MER1_type? -717 177 44 255 61 0 0 chr3 163381637 163381670 -54655488 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 2231 108 0 0 chr3 163381760 163382055 -54655103 + AluSg SINE Alu 1 295 -15 5359 55 3 0 chr3 163382056 163382730 -54654428 + L1PA6 LINE L1 5479 6154 0 288 228 61 26 chr3 163383337 163383451 -54653707 + L1ME1 LINE L1 452 569 -5961 263 200 29 0 chr3 163383475 163383545 -54653613 + L1ME1 LINE L1 5528 5599 -941 1313 202 13 0 chr3 163383545 163383813 -54653345 + AluJo SINE Alu 47 317 0 3230 207 25 44 chr3 163383818 163384747 -54652411 + L1ME1 LINE L1 5585 6644 -84 241 210 25 12 chr3 163384815 163384896 -54652262 + L1MA10 LINE L1 6249 6330 -4 368 272 49 35 chr3 163384950 163385195 -54651963 + L1MEd LINE L1 2449 2687 -3853 1667 154 52 19 chr3 163385205 163385472 -54651686 + AluJo SINE Alu 3 278 -34 342 267 152 18 chr3 163385496 163385661 -54651497 + L1MEd LINE L1 2666 2852 -3688 1353 154 46 23 chr3 163385713 163386019 -54651139 + MER33 DNA MER1_type 1 313 -11 611 164 0 0 chr3 163386064 163386180 -54650978 + L1MB8 LINE L1 6061 6176 -2 379 274 135 33 chr3 163386233 163386448 -54650710 + L1MEd LINE L1 3076 3312 -3228 524 116 0 0 chr3 163386582 163386651 -54650507 + U6 snRNA snRNA 1 69 -38 280 239 162 0 chr3 163387068 163387185 -54649973 + L1MEd LINE L1 3353 3488 -3052 495 276 0 8 chr3 163387496 163387619 -54649539 + L2 LINE L2 3187 3308 -5 3690 137 42 0 chr3 163388013 163388639 -54648519 - L1MB3 LINE L1 -7 6176 5525 241 241 91 22 chr3 163388794 163388950 -54648208 + L1MEd LINE L1 4171 4340 -2200 349 321 40 67 chr3 163388989 163389080 -54648078 - L1M4 LINE L1 -1978 4168 4076 2388 77 0 10 chr3 163389080 163389379 -54647779 - AluSq SINE Alu -17 296 1 349 321 40 67 chr3 163389379 163389511 -54647647 - L1M4 LINE L1 -2070 4076 3951 2906 215 86 43 chr3 163389679 163390692 -54646466 + L1MC3 LINE L1 6716 7771 -14 1952 140 0 4 chr3 163391143 163391421 -54645737 + AluSx SINE Alu 5 281 -31 344 309 11 11 chr3 163391444 163391538 -54645620 - MIR SINE MIR -161 101 8 576 0 0 0 chr3 163393100 163393164 -54643994 + (CTG)n Simple_repeat Simple_repeat 2 65 0 1972 167 7 0 chr3 163393164 163393464 -54643694 - AluJo SINE Alu -10 302 1 258 160 0 0 chr3 163393472 163393522 -54643636 + CT-rich Low_complexity Low_complexity 3 52 0 291 54 0 0 chr3 163394412 163394449 -54642709 + (TG)n Simple_repeat Simple_repeat 1 37 0 2047 237 40 31 chr3 163394522 163395105 -54642053 - L1ME3 LINE L1 -22 6140 5553 755 159 11 33 chr3 163395254 163395436 -54641722 + GA-rich Low_complexity Low_complexity 3 180 0 349 225 0 14 chr3 163396515 163396586 -54640572 + L2 LINE L2 3222 3291 -22 321 342 180 11 chr3 163397380 163397830 -54639328 - L2 LINE L2 -681 2633 2108 38 0 0 0 chr3 163398871 163398909 -54638249 + AT_rich Low_complexity Low_complexity 1 38 0 2925 217 74 40 chr3 163399000 163399311 -54637847 - L1ME2 LINE L1 -1 6163 5864 1595 144 23 112 chr3 163399311 163399659 -54637499 - AluYb8 SINE Alu -1 317 1 2925 217 74 40 chr3 163399659 163400395 -54636763 - L1ME2 LINE L1 -300 5864 5056 1980 143 3 3 chr3 163400395 163400688 -54636470 + AluSx SINE Alu 1 293 -19 2925 217 74 40 chr3 163400688 163401156 -54636002 - L1ME2 LINE L1 -1108 5056 4605 14542 41 0 3 chr3 163401156 163402881 -54634277 + HERV17 LTR ERV1 4300 6019 -2607 2451 55 0 0 chr3 163402903 163403195 -54633963 + HERV17 LTR ERV1 8335 8626 0 2765 49 0 0 chr3 163403195 163403520 -54633638 + LTR17 LTR ERV1 1 325 -455 237 98 0 0 chr3 163403521 163403562 -54633596 + (A)n Simple_repeat Simple_repeat 1 41 0 505 183 28 89 chr3 163403593 163403773 -54633385 - L1ME2 LINE L1 -1589 4557 4389 180 216 0 0 chr3 163403898 163403949 -54633209 + (CA)n Simple_repeat Simple_repeat 2 52 0 399 241 90 14 chr3 163404022 163404167 -54632991 + L1ME3A LINE L1 5995 6150 -20 27 29 0 0 chr3 163404171 163404205 -54632953 + AT_rich Low_complexity Low_complexity 1 34 0 293 293 53 30 chr3 163404801 163404934 -54632224 + L2 LINE L2 3137 3272 0 322 303 57 58 chr3 163405062 163405235 -54631923 - MIR SINE MIR -61 201 31 1784 172 10 3 chr3 163405343 163405645 -54631513 - AluSx SINE Alu -8 304 1 672 152 13 143 chr3 163405776 163406006 -54631152 + LTR37A LTR ERV1 227 426 0 1811 95 103 0 chr3 163406499 163406752 -54630406 + AluSx SINE Alu 1 279 -33 209 57 29 0 chr3 163406756 163406791 -54630367 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 529 263 101 6 chr3 163407060 163407239 -54629919 + MIR SINE MIR 64 259 -3 1846 107 41 28 chr3 163407986 163408305 -54628853 - THE1C LTR MaLR -52 323 1 1860 181 0 0 chr3 163408520 163408829 -54628329 - AluJo SINE Alu -1 311 3 227 348 9 0 chr3 163410017 163410132 -54627026 + L1ME LINE L1 5544 5659 -511 * 391 282 54 60 chr3 163410129 163410260 -54626898 + L1MEc LINE L1 1381 1511 -1065 2455 57 0 0 chr3 163410260 163410556 -54626602 - AluY SINE Alu -15 296 1 391 282 54 60 chr3 163410556 163410818 -54626340 + L1MEc LINE L1 1511 1712 -864 1531 241 12 6 chr3 163410970 163411118 -54626040 + L1M3c LINE L1 1357 1503 -5993 1617 136 0 8 chr3 163411118 163411360 -54625798 + AluSg/x SINE Alu 66 305 -7 1531 241 12 6 chr3 163411360 163411552 -54625606 + L1M3c LINE L1 1503 1699 -5797 4050 218 65 22 chr3 163411557 163411910 -54625248 + L1M3c LINE L1 3513 3850 -3715 2259 108 13 0 chr3 163411910 163412215 -54624943 + AluSx SINE Alu 1 309 -3 4050 218 65 22 chr3 163412215 163413207 -54623951 + L1M3c LINE L1 3850 4927 -2638 4642 166 82 8 chr3 163413207 163414264 -54622894 + L1MA4A LINE L1 5143 6280 -23 2282 144 10 3 chr3 163414260 163414649 -54622509 + L1M3c LINE L1 4908 5299 -2266 * 5154 17 0 0 chr3 163414643 163415241 -54621917 - L1PA4 LINE L1 -1411 4735 4138 7546 31 0 0 chr3 163415241 163416645 -54620513 + L1PA4 LINE L1 4749 6152 -3 2862 168 5 35 chr3 163416678 163416914 -54620244 + L1M3c LINE L1 5287 5528 -2037 2273 132 8 8 chr3 163416914 163417269 -54619889 + THE1A LTR MaLR 1 355 0 2862 168 5 35 chr3 163417269 163417639 -54619519 + L1M3c LINE L1 5528 5875 -1690 390 210 0 0 chr3 163417646 163417708 -54619450 + AluJ/FLAM SINE Alu 7 68 -234 195 272 29 68 chr3 163418869 163418888 -54618270 + MER5A DNA MER1_type 10 28 -161 2003 158 0 0 chr3 163418888 163419198 -54617960 + AluSx SINE Alu 1 310 -2 195 272 29 68 chr3 163419198 163419281 -54617877 + MER5A DNA MER1_type 28 108 -81 8599 70 16 2 chr3 163419668 163421574 -54615584 - L1PA7 LINE L1 -16 6138 4192 298 197 49 0 chr3 163422074 163422135 -54615023 + L2 LINE L2 3227 3290 -23 2322 134 41 9 chr3 163422143 163422767 -54614391 + MER39 LTR ERV1 8 697 -10 366 286 32 88 chr3 163423244 163423461 -54613697 - L2 LINE L2 -40 3232 3028 1621 134 4 22 chr3 163423533 163423827 -54613331 + L1MC1 LINE L1 5472 5754 -579 1918 143 6 52 chr3 163423827 163424192 -54612966 + L1MC1 LINE L1 5975 6322 -11 25 51 0 0 chr3 163424192 163424231 -54612927 + AT_rich Low_complexity Low_complexity 1 39 0 1405 276 47 10 chr3 163424378 163424863 -54612295 - L1MC4a LINE L1 -1868 5940 5438 2363 93 0 3 chr3 163424939 163425249 -54611909 - AluSc SINE Alu 0 309 1 669 293 43 24 chr3 163425646 163426060 -54611098 - L1MC4a LINE L1 -1302 4844 4418 2285 95 0 0 chr3 163426060 163426427 -54610731 - AluSx SINE Alu 0 367 1 669 293 43 24 chr3 163426427 163426478 -54610680 - L1MC4a LINE L1 -1728 4418 4369 853 233 0 0 chr3 163426489 163426648 -54610510 - FAM SINE Alu -16 159 1 288 357 16 8 chr3 163427963 163428089 -54609069 - MIR3 SINE MIR -4 204 78 1869 184 53 18 chr3 163428300 163428790 -54608368 - Charlie4a DNA MER1_type 0 508 2 1779 124 91 4 chr3 163429945 163430220 -54606938 + AluSc SINE Alu 1 299 -10 32 26 0 0 chr3 163430666 163430705 -54606453 + AT_rich Low_complexity Low_complexity 1 39 0 2165 130 10 0 chr3 163430774 163431082 -54606076 + AluSx SINE Alu 1 311 -1 803 152 269 18 chr3 163431288 163431459 -54605699 + AluJb SINE Alu 81 294 -18 9998 53 0 12 chr3 163432222 163433513 -54603645 + L1PA5 LINE L1 4097 5383 -779 2200 95 0 0 chr3 163433513 163433824 -54603334 + AluY SINE Alu 1 311 0 9998 53 0 12 chr3 163433824 163434595 -54602563 + L1PA5 LINE L1 5383 6162 0 288 256 11 56 chr3 163434860 163434950 -54602208 + L2 LINE L2 3228 3313 0 684 258 63 5 chr3 163435135 163435325 -54601833 - LTR67 LTR ERVL -8 549 349 241 257 40 50 chr3 163435415 163435516 -54601642 - LTR67 LTR ERVL -337 220 121 1595 177 35 11 chr3 163437008 163437290 -54599868 + AluJo SINE Alu 1 289 -23 543 122 78 0 chr3 163437489 163437579 -54599579 + FLAM_A SINE Alu 29 125 -17 843 105 73 0 chr3 163438722 163438846 -54598312 + FLAM_C SINE Alu 1 133 0 291 279 12 0 chr3 163439634 163439720 -54597438 - Charlie8 DNA MER1_type -2215 202 116 244 241 92 0 chr3 163440134 163440221 -54596937 - L1MC4a LINE L1 -1834 5974 5880 1554 148 53 32 chr3 163440390 163440673 -54596485 + AluJo SINE Alu 12 300 -12 386 167 22 67 chr3 163440751 163440841 -54596317 + U6 snRNA snRNA 22 107 0 2061 103 7 3 chr3 163442342 163442658 -54594500 - AluSc SINE Alu 0 309 1 1986 152 14 0 chr3 163442861 163443024 -54594134 - AluSx SINE Alu -18 294 124 189 0 0 0 chr3 163443024 163443045 -54594113 + (TG)n Simple_repeat Simple_repeat 2 22 0 1986 152 14 0 chr3 163443045 163443171 -54593987 - AluSx SINE Alu -188 124 1 268 226 128 88 chr3 163443266 163443368 -54593790 - MIR SINE MIR -68 140 35 252 143 0 0 chr3 163443915 163443957 -54593201 + (CA)n Simple_repeat Simple_repeat 2 43 0 415 279 61 27 chr3 163444351 163444498 -54592660 - MIR SINE MIR -103 159 8 393 168 193 8 chr3 163444773 163444892 -54592266 - MER69A DNA AcHobo -3 174 34 207 0 0 0 chr3 163445547 163445570 -54591588 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 690 118 109 0 chr3 163445849 163445959 -54591199 - FLAM_C SINE Alu -19 124 3 315 252 94 39 chr3 163446790 163446917 -54590241 + MIR3 SINE MIR 74 207 -1 601 271 111 24 chr3 163447070 163447358 -54589800 - L2 LINE L2 -5 3308 2996 395 338 74 46 chr3 163447349 163447530 -54589628 - L2 LINE L2 -668 2646 2471 * 2047 122 24 10 chr3 163447530 163447825 -54589333 + AluSx SINE Alu 2 300 -12 395 338 74 46 chr3 163447825 163448078 -54589080 - L2 LINE L2 -843 2471 2200 202 287 152 46 chr3 163448111 163448505 -54588653 - L2 LINE L2 -14 3299 2825 2409 123 60 26 chr3 163449530 163449946 -54587212 - Tigger2a DNA MER2_type 0 434 5 1836 152 70 3 chr3 163450030 163450373 -54586785 + MER47A DNA MER2_type 1 366 0 22 35 0 0 chr3 163450749 163450778 -54586380 + AT_rich Low_complexity Low_complexity 1 29 0 363 281 118 0 chr3 163450858 163450993 -54586165 - MIR SINE MIR -2 260 110 2094 125 3 3 chr3 163451007 163451302 -54585856 + AluSx SINE Alu 1 295 -17 1870 164 3 0 chr3 163452078 163452371 -54584787 - AluJo SINE Alu -18 294 1 441 249 5 58 chr3 163452400 163452589 -54584569 - L1MC5 LINE L1 -32 7929 7751 717 181 15 8 chr3 163452998 163453131 -54584027 + FAM SINE Alu 33 166 -19 2320 106 3 0 chr3 163453163 163453466 -54583692 + AluSp SINE Alu 1 304 -9 22 70 0 0 chr3 163453788 163453831 -54583327 + AT_rich Low_complexity Low_complexity 1 43 0 30 45 0 0 chr3 163453953 163453997 -54583161 + AT_rich Low_complexity Low_complexity 1 44 0 184 242 172 89 chr3 163454283 163454440 -54582718 + MER5B DNA MER1_type 1 170 -8 378 179 0 24 chr3 163455534 163455618 -54581540 + L1MC5 LINE L1 7832 7913 -48 6208 183 39 14 chr3 163455635 163456332 -54580826 + L1MB3 LINE L1 7 754 -5630 2414 99 3 0 chr3 163456332 163456644 -54580514 + AluSp SINE Alu 1 313 0 6208 183 39 14 chr3 163456644 163457252 -54579906 + L1MB3 LINE L1 754 1345 -5039 * 8366 190 23 64 chr3 163457249 163457962 -54579196 + L1MB3 LINE L1 3073 3814 -2605 731 184 8 0 chr3 163457962 163458087 -54579071 + FLAM_A SINE Alu 6 131 -11 8366 190 23 64 chr3 163458087 163460350 -54576808 + L1MB3 LINE L1 3814 6168 -251 2214 115 3 6 chr3 163460350 163460662 -54576496 + AluSx SINE Alu 1 311 -1 8366 190 23 64 chr3 163460662 163460694 -54576464 + L1MB3 LINE L1 6168 6200 -219 2014 157 0 0 chr3 163460694 163461006 -54576152 + AluSx SINE Alu 1 312 0 8366 190 23 64 chr3 163461006 163461355 -54575803 + L1MB3 LINE L1 6200 6411 -8 1277 178 72 8 chr3 163462663 163462927 -54574231 - AluJb SINE Alu -31 281 1 25 0 0 0 chr3 163463118 163463143 -54574015 + AT_rich Low_complexity Low_complexity 1 25 0 2185 126 3 0 chr3 163463410 163463720 -54573438 - AluSx SINE Alu 0 312 2 1104 24 0 0 chr3 163464680 163464806 -54572352 + AluSg/x SINE Alu 173 298 -11 265 271 4 40 chr3 163465285 163465423 -54571735 + T-rich Low_complexity Low_complexity 5 217 0 400 261 70 35 chr3 163465980 163466122 -54571036 - L3b LINE CR1 -156 1427 1281 2202 143 92 2 chr3 163466138 163466531 -54570627 + MSTA LTR MaLR 1 428 0 584 261 128 5 chr3 163466574 163466769 -54570389 - MIR SINE MIR -42 220 2 180 179 0 0 chr3 163467301 163467340 -54569818 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 231 267 33 8 chr3 163467543 163467663 -54569495 + (TA)n Simple_repeat Simple_repeat 2 124 0 356 144 211 0 chr3 163469616 163469706 -54567452 + MER53 DNA DNA 2 110 -79 360 202 21 31 chr3 163470277 163470373 -54566785 - L1ME1 LINE L1 -1 6333 6080 2554 182 49 121 chr3 163470375 163471276 -54565882 - L1M4 LINE L1 -1665 4481 3646 543 143 48 24 chr3 163471282 163471408 -54565750 + LTR37A LTR ERV1 298 426 0 365 200 24 12 chr3 163471516 163471601 -54565557 + MER20B DNA MER1_type 691 776 -7 340 179 39 13 chr3 163471804 163471882 -54565276 - L1MB3 LINE L1 -322 5861 5782 3180 200 2 45 chr3 163471883 163472134 -54565024 - MER82 DNA MER2_type -1 652 392 2902 149 21 0 chr3 163472134 163472557 -54564601 - MSTB1 LTR MaLR 0 432 1 3180 200 2 45 chr3 163472557 163472950 -54564208 - MER82 DNA MER2_type -261 392 36 626 171 0 9 chr3 163472955 163473066 -54564092 - L1MB3 LINE L1 -400 5784 5675 780 246 47 5 chr3 163473067 163473282 -54563876 - L1MEc LINE L1 -3563 2652 2429 * 1923 264 57 48 chr3 163473276 163474049 -54563109 - L1MEc LINE L1 -5583 813 34 291 121 121 121 chr3 163474961 163475044 -54562114 - MIR3 SINE MIR -18 190 108 1889 198 20 65 chr3 163475246 163475736 -54561422 - LTR37B LTR ERV1 0 468 1 309 239 0 0 chr3 163475788 163475855 -54561303 - MER69 DNA AcHobo -10 2516 2450 * 321 231 44 22 chr3 163475852 163475943 -54561215 - MER69 DNA AcHobo -2379 147 55 2195 141 30 41 chr3 163476019 163476118 -54561040 - THE1B LTR MaLR 0 364 265 3559 143 110 3 chr3 163476118 163476691 -54560467 - MER51A LTR ERV1 0 634 1 2195 141 30 41 chr3 163476691 163476959 -54560199 - THE1B LTR MaLR -99 265 1 268 231 0 0 chr3 163477338 163477390 -54559768 + T-rich Low_complexity Low_complexity 3 54 0 881 176 0 11 chr3 163477392 163477574 -54559584 + CT-rich Low_complexity Low_complexity 1 180 0 996 113 11 17 chr3 163477593 163477770 -54559388 + (TTTC)n Simple_repeat Simple_repeat 2 177 0 516 142 0 113 chr3 163477774 163477880 -54559278 - FLAM_A SINE Alu -27 115 22 449 244 215 7 chr3 163477978 163478113 -54559045 - MIR SINE MIR -10 252 90 816 235 42 64 chr3 163478281 163478592 -54558566 - MLT1K LTR MaLR -18 570 267 2395 82 0 0 chr3 163481621 163481915 -54555243 - AluSq SINE Alu -19 294 1 669 167 90 7 chr3 163482404 163482548 -54554610 + MIR SINE MIR 107 262 0 777 193 47 35 chr3 163482807 163483061 -54554097 + LTR37B LTR ERV1 199 455 -13 3822 125 82 30 chr3 163483169 163483848 -54553310 - MER50 LTR ERV1 -19 715 1 379 223 48 39 chr3 163484546 163484649 -54552509 - MER5B DNA MER1_type 0 178 75 922 237 195 39 chr3 163485340 163485750 -54551408 + L2 LINE L2 1802 2275 -1039 2921 161 2 2 chr3 163485804 163486246 -54550912 - L1PA15 LINE L1 0 6165 5724 26 0 0 0 chr3 163486268 163486294 -54550864 + AT_rich Low_complexity Low_complexity 1 26 0 12283 175 40 67 chr3 163486311 163486707 -54550451 - L1PB1 LINE L1 0 6867 6462 228 104 0 21 chr3 163486707 163486755 -54550403 + LTR66 LTR ERVL 394 440 -170 12283 175 40 67 chr3 163486755 163489731 -54547427 - L1PB1 LINE L1 -405 6462 3407 859 133 0 0 chr3 163489731 163489851 -54547307 + AluSq/x SINE Alu 1 120 -192 251 35 0 0 chr3 163489851 163489880 -54547278 - U2 snRNA snRNA -159 29 1 1312 91 0 110 chr3 163489880 163490099 -54547059 + AluSc SINE Alu 101 295 -14 12283 175 40 67 chr3 163490099 163492655 -54544503 - L1PB1 LINE L1 -3457 3410 637 417 187 22 0 chr3 163492662 163492753 -54544405 - L1PB1 LINE L1 -6666 197 105 906 159 26 36 chr3 163492769 163492964 -54544194 - L1PB1 LINE L1 -6668 195 3 3554 117 13 0 chr3 163492972 163493705 -54543453 - L1P4 LINE L1 -420 5745 5005 2278 80 3 10 chr3 163493738 163494037 -54543121 - AluY SINE Alu -14 297 1 212 264 209 18 chr3 163495811 163495921 -54541237 - MIR SINE MIR -13 249 119 292 250 15 15 chr3 163496062 163496130 -54541028 + MER58A DNA MER1_type 18 85 -22 1413 185 131 15 chr3 163498988 163499323 -54537835 + L1ME1 LINE L1 5788 6161 -5 619 257 14 0 chr3 163500293 163500441 -54536717 + LTR33 LTR ERVL 358 507 -14 498 272 98 69 chr3 163500462 163500901 -54536257 + L2 LINE L2 2775 3227 -86 390 222 156 22 chr3 163500911 163501046 -54536112 - LTR33 LTR ERVL 0 521 369 384 314 101 39 chr3 163502765 163502972 -54534186 - L2 LINE L2 -5 3267 3048 1050 298 99 6 chr3 163502991 163503457 -54533701 + LTR33 LTR ERVL 6 514 -7 195 307 153 13 chr3 163503457 163503607 -54533551 - L2 LINE L2 -217 3055 2885 339 326 102 27 chr3 163504077 163504264 -54532894 + L2 LINE L2 3071 3271 -1 234 128 0 0 chr3 163504865 163504904 -54532254 + (TTTC)n Simple_repeat Simple_repeat 3 41 0 * 366 195 0 0 chr3 163504903 163504980 -54532178 + CT-rich Low_complexity Low_complexity 2 78 0 2384 137 6 19 chr3 163505120 163505486 -54531672 + MER46B DNA MER2_type 1 236 0 184 289 0 0 chr3 163505538 163505576 -54531582 + MIR SINE MIR 7 44 -218 473 143 121 0 chr3 163505596 163505687 -54531471 + L2 LINE L2 3211 3312 -1 * 620 280 48 5 chr3 163505686 163505875 -54531283 + MIR SINE MIR 57 253 -9 411 191 101 62 chr3 163505980 163506158 -54531000 - ORSL DNA AcHobo -47 228 44 275 206 47 47 chr3 163506817 163506924 -54530234 + L1ME4a LINE L1 5987 6093 -28 31 26 0 0 chr3 163507154 163507192 -54529966 + AT_rich Low_complexity Low_complexity 1 38 0 180 235 198 0 chr3 163507428 163507509 -54529649 + L2 LINE L2 2333 2429 -885 250 344 109 30 chr3 163507621 163507851 -54529307 - L2 LINE L2 -346 2968 2721 353 274 0 11 chr3 163508277 163508372 -54528786 - MIR SINE MIR -59 149 56 609 277 103 18 chr3 163508386 163508610 -54528548 - MIR SINE MIR -16 246 4 189 281 222 15 chr3 163512002 163512040 -54525118 + MIR SINE MIR 46 75 -187 1034 254 18 5 chr3 163512040 163512260 -54524898 + MER58A DNA MER1_type 2 224 0 189 281 222 15 chr3 163512260 163512356 -54524802 + MIR SINE MIR 75 208 -54 232 222 174 111 chr3 163512362 163512431 -54524727 + MER103 DNA DNA 13 76 -90 1365 163 27 90 chr3 163512431 163512759 -54524399 - AluJo SINE Alu 0 311 3 232 222 174 111 chr3 163512759 163512832 -54524326 + MER103 DNA DNA 76 165 -1 498 248 285 24 chr3 163512857 163513232 -54523926 + Charlie2a DNA MER1_type 2 474 -2388 1035 222 17 0 chr3 163513239 163513478 -54523680 + Charlie2a DNA MER1_type 766 1008 -1854 554 231 0 0 chr3 163513484 163513592 -54523566 + Charlie2a DNA MER1_type 2750 2857 -5 186 43 0 0 chr3 163514731 163514754 -54522404 + (TAA)n Simple_repeat Simple_repeat 1 23 0 234 208 132 75 chr3 163514984 163515090 -54522068 - MLT1L LTR MaLR -322 293 182 485 297 55 6 chr3 163517680 163517845 -54519313 + MIR SINE MIR 90 262 0 753 301 136 20 chr3 163517929 163518378 -54518780 - L2 LINE L2 -1 3312 2812 486 280 13 51 chr3 163518363 163518520 -54518638 + MIR3 SINE MIR 38 188 -20 * 2966 197 64 16 chr3 163519198 163519993 -54517165 + L1MD3 LINE L1 6948 7994 -1 238 215 14 104 chr3 163520107 163520251 -54516907 + L1M4 LINE L1 4462 4592 -1554 1014 242 34 4 chr3 163520266 163520535 -54516623 - Charlie1b DNA MER1_type -204 319 43 290 236 68 91 chr3 163520620 163520840 -54516318 - L1MC4 LINE L1 -2 8040 7826 836 233 27 90 chr3 163520876 163521211 -54515947 - L1ME2 LINE L1 -10 6154 5841 2053 118 6 16 chr3 163521638 163521951 -54515207 - AluSx SINE Alu 0 312 3 1759 122 0 61 chr3 163523756 163524051 -54513107 + AluSx SINE Alu 21 297 -15 218 310 69 11 chr3 163524853 163524940 -54512218 - L2 LINE L2 -19 3253 3162 204 327 67 10 chr3 163524938 163525042 -54512116 - MIR3 SINE MIR -15 193 84 * 400 318 98 25 chr3 163525234 163525549 -54511609 + L1ME LINE L1 5398 5735 -386 874 275 32 20 chr3 163525556 163525807 -54511351 - MIR SINE MIR -7 255 2 701 300 108 42 chr3 163525967 163526391 -54510767 + L1MC4a LINE L1 4030 4505 -1641 1651 161 17 14 chr3 163526391 163526683 -54510475 + AluJb SINE Alu 16 308 -4 701 300 108 42 chr3 163526683 163526848 -54510310 + L1MC4a LINE L1 4505 4658 -1488 3252 159 28 30 chr3 163526848 163527522 -54509636 + L1MB7 LINE L1 5512 6184 0 25 65 0 0 chr3 163527795 163527841 -54509317 + AT_rich Low_complexity Low_complexity 1 46 0 1784 251 53 19 chr3 163527844 163528413 -54508745 + L1MC4a LINE L1 5254 5841 -1967 21 0 0 0 chr3 163528660 163528681 -54508477 + AT_rich Low_complexity Low_complexity 1 21 0 736 174 0 8 chr3 163528802 163528958 -54508200 + AluJb SINE Alu 155 309 0 365 198 22 33 chr3 163529167 163529258 -54507900 + L1MC4a LINE L1 6554 6643 -1165 632 141 14 21 chr3 163529284 163529426 -54507732 + (TAGA)n Simple_repeat Simple_repeat 1 141 0 354 231 110 7 chr3 163529435 163529620 -54507538 + MER46C DNA MER2_type 1 237 -101 24 77 0 0 chr3 163529959 163530011 -54507147 + AT_rich Low_complexity Low_complexity 1 52 0 425 211 18 105 chr3 163530320 163530491 -54506667 + MIR SINE MIR 107 262 0 21 0 0 0 chr3 163531509 163531530 -54505628 + AT_rich Low_complexity Low_complexity 1 21 0 455 213 134 24 chr3 163532190 163532354 -54504804 - L1ME1 LINE L1 -44 6122 5941 225 154 0 0 chr3 163532472 163532511 -54504647 + (CA)n Simple_repeat Simple_repeat 1 39 0 22 0 0 0 chr3 163532600 163532622 -54504536 + AT_rich Low_complexity Low_complexity 1 22 0 976 161 0 0 chr3 163532721 163532883 -54504275 - FAM SINE Alu -4 45 1 1832 278 61 52 chr3 163533381 163533839 -54503319 + L2 LINE L2 2264 2716 -597 231 88 0 0 chr3 163533845 163533879 -54503279 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 1952 126 0 10 chr3 163533879 163534166 -54502992 - AluSx SINE Alu -26 286 1 1832 278 61 52 chr3 163534166 163534630 -54502528 + L2 LINE L2 2716 3202 -111 798 256 23 30 chr3 163534630 163534892 -54502266 - MIR SINE MIR 0 262 3 1832 278 61 52 chr3 163534892 163535005 -54502153 + L2 LINE L2 3202 3312 -1 310 306 99 0 chr3 163535020 163535141 -54502017 - MIR3 SINE MIR -74 134 2 242 307 7 87 chr3 163535212 163535362 -54501796 - MIR SINE MIR -112 150 13 312 306 56 28 chr3 163536072 163536180 -54500978 - MIR SINE MIR -145 117 7 40 67 0 0 chr3 163536442 163536517 -54500641 + AT_rich Low_complexity Low_complexity 1 75 0 2291 92 3 0 chr3 163536553 163536856 -54500302 + AluSp SINE Alu 3 306 -7 22 0 0 0 chr3 163537866 163537888 -54499270 + AT_rich Low_complexity Low_complexity 1 22 0 448 291 123 30 chr3 163538034 163538237 -54498921 + MIR SINE MIR 27 248 -14 219 287 81 0 chr3 163539207 163539294 -54497864 + L2 LINE L2 3219 3312 -1 27 29 0 0 chr3 163539374 163539408 -54497750 + AT_rich Low_complexity Low_complexity 1 34 0 1929 122 66 12 chr3 163540500 163540820 -54496338 - MER1B DNA MER1_type 0 337 1 382 252 175 7 chr3 163542045 163542188 -54494970 - MIR SINE MIR -44 218 52 433 244 188 61 chr3 163542660 163542873 -54494285 + MIR SINE MIR 2 241 -21 205 293 121 35 chr3 163543177 163543293 -54493865 - L2 LINE L2 -859 2455 2330 2168 90 0 68 chr3 163543355 163543676 -54493482 + AluSg SINE Alu 1 299 -11 2124 98 0 4 chr3 163543727 163544003 -54493155 + AluSc SINE Alu 1 275 -34 339 25 0 0 chr3 163544003 163544043 -54493115 + (CA)n Simple_repeat Simple_repeat 2 41 0 2247 85 0 3 chr3 163544093 163544386 -54492772 + AluSc SINE Alu 1 292 -17 593 298 2 4 chr3 163545446 163545608 -54491550 + L1M4 LINE L1 4009 4169 -1977 266 239 86 34 chr3 163545613 163545730 -54491428 + L1M4 LINE L1 4147 4269 -1877 1260 170 10 0 chr3 163545734 163545940 -54491218 + AluJo SINE Alu 5 212 -100 681 224 0 0 chr3 163545948 163546104 -54491054 - L1M4 LINE L1 -3472 4093 3938 * 688 200 41 59 chr3 163546103 163546273 -54490885 - L1M4 LINE L1 -7223 342 176 * 921 213 35 4 chr3 163546270 163546500 -54490658 + L1M4 LINE L1 2748 2984 -3162 6589 153 45 9 chr3 163546509 163546797 -54490361 + L1MA2 LINE L1 3922 4198 -2106 186 43 0 0 chr3 163546797 163546820 -54490338 + (CAAT)n Simple_repeat Simple_repeat 4 26 0 6589 153 45 9 chr3 163546820 163548714 -54488444 + L1MA2 LINE L1 4198 6300 -4 1216 249 36 122 chr3 163548737 163549182 -54487976 + L1MEc LINE L1 396 878 -5518 3074 98 26 4 chr3 163549182 163549639 -54487519 + L1PA11 LINE L1 5707 6173 -1 1216 249 36 122 chr3 163549639 163549884 -54487274 + L1MEc LINE L1 878 1000 -5396 183 80 0 0 chr3 163549884 163549909 -54487249 + (CA)n Simple_repeat Simple_repeat 2 26 0 1216 249 36 122 chr3 163549909 163550077 -54487081 + L1MEc LINE L1 1000 1181 -5215 303 209 139 109 chr3 163550071 163550301 -54486857 + L1MC4 LINE L1 7584 7820 -222 * 2016 146 0 0 chr3 163551698 163551993 -54485165 + AluSx SINE Alu 1 295 -17 481 279 59 39 chr3 163552192 163552446 -54484712 - MER112 DNA MER1_type 0 260 2 28 61 0 0 chr3 163552653 163552702 -54484456 + AT_rich Low_complexity Low_complexity 1 49 0 1821 167 7 7 chr3 163553721 163554021 -54483137 + AluJo SINE Alu 1 300 -12 201 74 0 0 chr3 163555427 163555454 -54481704 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 210 118 0 0 chr3 163555836 163555870 -54481288 + (A)n Simple_repeat Simple_repeat 1 34 0 187 347 82 10 chr3 163556106 163556204 -54480954 - L2 LINE L2 -6 3307 3203 2356 91 0 3 chr3 163556249 163556557 -54480601 + AluSq SINE Alu 1 307 -6 526 240 8 16 chr3 163558804 163558929 -54478229 - MIR SINE MIR -25 237 114 507 263 83 15 chr3 163559046 163559251 -54477907 + Tigger8 DNA MER2_type 328 546 -120 284 347 127 33 chr3 163559581 163559880 -54477278 - L2 LINE L2 -212 3060 2740 21 0 0 0 chr3 163561504 163561525 -54475633 + AT_rich Low_complexity Low_complexity 1 21 0 498 289 53 18 chr3 163561670 163561898 -54475260 + L1MC4a LINE L1 5631 5866 -1942 2247 121 0 0 chr3 163561976 163562281 -54474877 + AluSx SINE Alu 1 305 -7 1376 235 94 24 chr3 163562390 163562803 -54474355 - HsTC2c DNA Tc2 -82 647 206 6545 168 45 22 chr3 163562806 163563697 -54473461 + L1M3f LINE L1 3 952 -4711 2599 17 0 3 chr3 163563697 163563993 -54473165 - AluYa5 SINE Alu -16 295 1 6545 168 45 22 chr3 163563993 163564656 -54472502 + L1M3f LINE L1 952 1598 -4065 297 250 0 0 chr3 163564667 163564759 -54472399 + GA-rich Low_complexity Low_complexity 2 93 0 2440 196 59 46 chr3 163564810 163565752 -54471406 + L1M3f LINE L1 1612 2568 -3760 2357 67 3 3 chr3 163565752 163566051 -54471107 + AluY SINE Alu 1 299 -12 2440 196 59 46 chr3 163566051 163566273 -54470885 + L1M3f LINE L1 2568 2786 -3542 3525 90 2 0 chr3 163566386 163566851 -54470307 + MER41A LTR ERV1 89 554 0 2131 94 17 3 chr3 163566851 163567150 -54470008 + MER41A LTR ERV1 252 554 0 474 205 0 0 chr3 163567150 163567262 -54469896 + L1M3f LINE L1 3198 3309 -3019 1116 166 0 0 chr3 163567313 163567488 -54469670 + AluJo SINE Alu 117 291 -21 222 37 0 0 chr3 163567606 163567633 -54469525 + (TA)n Simple_repeat Simple_repeat 2 28 0 22 56 0 0 chr3 163567938 163567974 -54469184 + AT_rich Low_complexity Low_complexity 1 36 0 1806 142 113 75 chr3 163568466 163568882 -54468276 - MSTB1 LTR MaLR 0 432 1 258 32 0 0 chr3 163568922 163568953 -54468205 + (A)n Simple_repeat Simple_repeat 1 31 0 2181 124 0 0 chr3 163569284 163569582 -54467576 + AluSx SINE Alu 3 300 -12 372 319 78 0 chr3 163570078 163570219 -54466939 - L1MC/D LINE L1 -2220 5588 5437 253 247 55 0 chr3 163570286 163570377 -54466781 + L1ME LINE L1 5745 5844 -322 319 262 64 50 chr3 163570727 163570868 -54466290 + L1ME4a LINE L1 5725 5867 -254 5915 143 18 66 chr3 163571041 163572699 -54464459 - L1MA4A LINE L1 -8 6295 4757 1988 112 31 0 chr3 163572699 163572985 -54464173 - AluSx SINE Alu -15 297 3 5915 143 18 66 chr3 163572985 163573250 -54463908 - L1MA4A LINE L1 -1546 4757 4481 2244 132 90 32 chr3 163574697 163575129 -54462029 - MSTB2 LTR MaLR 0 457 1 2247 86 3 7 chr3 163575925 163576217 -54460941 + AluY SINE Alu 1 291 -20 1632 201 3 3 chr3 163576229 163576528 -54460630 + AluJo SINE Alu 1 299 -13 828 251 66 20 chr3 163577040 163577316 -54459842 + L1ME LINE L1 5383 5662 -459 330 250 11 22 chr3 163577357 163577449 -54459709 - L1MC4 LINE L1 -1339 6703 6613 1890 152 20 3 chr3 163577635 163577931 -54459227 - AluJb SINE Alu -11 301 1 25 0 0 0 chr3 163578739 163578764 -54458394 + AT_rich Low_complexity Low_complexity 1 25 0 1977 153 7 3 chr3 163578837 163579144 -54458014 + AluJb SINE Alu 1 308 -4 519 17 0 0 chr3 163579471 163579531 -54457627 + (TC)n Simple_repeat Simple_repeat 1 60 0 518 301 91 41 chr3 163579576 163579995 -54457163 + L1ME4a LINE L1 5458 5897 -224 254 268 0 0 chr3 163580042 163580098 -54457060 + (CATATA)n Simple_repeat Simple_repeat 1 56 0 341 326 33 43 chr3 163580098 163580282 -54456876 + L1ME4a LINE L1 5935 6116 -5 22 0 0 0 chr3 163580458 163580480 -54456678 + AT_rich Low_complexity Low_complexity 1 22 0 22 88 0 0 chr3 163580492 163580549 -54456609 + AT_rich Low_complexity Low_complexity 1 57 0 2096 131 0 0 chr3 163582693 163582990 -54454168 + AluSx SINE Alu 1 297 -15 766 210 99 33 chr3 163583147 163583390 -54453768 - MIR SINE MIR -3 259 1 344 281 89 37 chr3 163583401 163583536 -54453622 - MIR SINE MIR -116 146 5 238 299 155 0 chr3 163583991 163584088 -54453070 - L2 LINE L2 -14 3258 3147 190 71 24 24 chr3 163584215 163584257 -54452901 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 369 244 201 61 chr3 163584869 163585033 -54452125 - MIR SINE MIR -12 250 64 220 323 0 21 chr3 163585100 163585196 -54451962 + GA-rich Low_complexity Low_complexity 2 95 0 404 174 14 0 chr3 163585724 163585793 -54451365 - Tigger5 DNA MER2_type -7 2316 2247 401 191 0 0 chr3 163585807 163585875 -54451283 + Tigger5 DNA MER2_type 2251 2318 -5 * 430 224 51 20 chr3 163585859 163585957 -54451201 - Tigger5 DNA MER2_type -2222 101 1 2084 125 0 10 chr3 163586367 163586671 -54450487 + AluSq SINE Alu 1 301 -12 1005 147 46 60 chr3 163587953 163588216 -54448942 + L1MB7 LINE L1 5948 6182 -2 3227 168 31 0 chr3 163588273 163588792 -54448366 + MER68 LTR ERV1 2 536 -26 834 209 98 26 chr3 163589016 163589250 -54447908 - MIR SINE MIR 0 262 12 389 305 58 11 chr3 163589542 163589633 -54447525 - L1ME4a LINE L1 -75 6046 5961 1975 166 36 0 chr3 163589633 163589964 -54447194 + MER2 DNA MER2_type 2 344 0 389 305 58 11 chr3 163589964 163590062 -54447096 - L1ME4a LINE L1 -160 5961 5848 224 347 104 12 chr3 163590421 163590594 -54446564 + MIR SINE MIR 49 237 -25 2089 123 0 32 chr3 163591043 163591359 -54445799 + AluSx SINE Alu 1 306 -6 2129 139 45 11 chr3 163593239 163593591 -54443567 + THE1B LTR MaLR 1 364 0 11197 92 7 31 chr3 163593591 163595209 -54441949 + THE1B-int LTR MaLR 1 1580 0 2197 117 79 15 chr3 163595209 163595551 -54441607 + THE1B LTR MaLR 1 364 0 4054 150 66 60 chr3 163595809 163596516 -54440642 - L1MB3 LINE L1 0 6183 5468 188 67 33 0 chr3 163596516 163596546 -54440612 + (TA)n Simple_repeat Simple_repeat 2 32 0 4054 150 66 60 chr3 163596546 163596732 -54440426 - L1MB3 LINE L1 -715 5468 5285 4900 78 52 91 chr3 163596732 163597280 -54439878 + L1PB1 LINE L1 5305 5808 -343 477 34 0 0 chr3 163597280 163597339 -54439819 + (CA)n Simple_repeat Simple_repeat 2 60 0 4900 78 52 91 chr3 163597339 163597671 -54439487 + L1PB1 LINE L1 5808 6151 0 * 7817 212 42 35 chr3 163597669 163598084 -54439074 - L1MB3 LINE L1 -858 5288 4877 2225 169 48 19 chr3 163598084 163598499 -54438659 - MSTB1 LTR MaLR -3 429 3 7817 212 42 35 chr3 163598499 163599635 -54437523 - L1MB3 LINE L1 -1269 4877 3716 1654 110 0 0 chr3 163599635 163599854 -54437304 + AluSg/x SINE Alu 83 301 -11 7817 212 42 35 chr3 163599854 163600395 -54436763 - L1MB3 LINE L1 -2430 3716 3180 240 162 0 0 chr3 163601184 163601221 -54435937 - MSTA LTR MaLR 0 428 392 10563 109 9 33 chr3 163601221 163602838 -54434320 - THE1B-int LTR MaLR -2 1578 1 2408 132 6 6 chr3 163602838 163603202 -54433956 - THE1B LTR MaLR 0 364 1 2056 112 14 0 chr3 163603573 163603860 -54433298 + AluSx SINE Alu 1 291 -21 181 295 0 107 chr3 163603905 163604017 -54433141 - MER5A DNA MER1_type -53 136 37 295 277 0 30 chr3 163604612 163604713 -54432445 - MIR SINE MIR -5 257 160 21 0 0 0 chr3 163605004 163605025 -54432133 + AT_rich Low_complexity Low_complexity 1 21 0 758 162 0 0 chr3 163605026 163605143 -54432015 - FLAM_C SINE Alu -16 117 1 458 280 58 53 chr3 163605243 163605468 -54431690 + L2 LINE L2 3085 3310 -3 1674 152 113 3 chr3 163605574 163605884 -54431274 + MER2 DNA MER2_type 1 344 0 25 0 0 0 chr3 163605888 163605913 -54431245 + AT_rich Low_complexity Low_complexity 1 25 0 1766 178 0 3 chr3 163605913 163606200 -54430958 + AluJb SINE Alu 1 286 -26 551 263 32 4 chr3 163607014 163607199 -54429959 + L1MA10 LINE L1 5988 6327 -6 1974 114 46 0 chr3 163607507 163607788 -54429370 + AluSx SINE Alu 1 294 -18 1364 132 15 10 chr3 163607798 163608003 -54429155 + AluJo SINE Alu 87 292 -20 995 86 0 20 chr3 163608003 163608155 -54429003 + L1PA13 LINE L1 6015 6163 0 1305 175 103 27 chr3 163608444 163608736 -54428422 - MLT1D LTR MaLR -190 315 2 1332 172 55 0 chr3 163608767 163609023 -54428135 - L1MC4 LINE L1 -953 7089 6820 23 0 0 0 chr3 163609149 163609172 -54427986 + AT_rich Low_complexity Low_complexity 1 23 0 684 257 121 6 chr3 163609201 163609539 -54427619 - L1ME4a LINE L1 -206 5915 5539 330 257 112 62 chr3 163609613 163609792 -54427366 - MIR SINE MIR 0 262 75 298 233 0 0 chr3 163609755 163609815 -54427343 + MIR SINE MIR 203 262 0 * 4441 182 46 24 chr3 163610502 163612319 -54424839 + L1MB5 LINE L1 4311 6168 -6 683 203 0 0 chr3 163612619 163612752 -54424406 + FLAM_C SINE Alu 1 133 0 29 28 0 0 chr3 163612960 163612996 -54424162 + AT_rich Low_complexity Low_complexity 1 36 0 224 322 141 16 chr3 163613398 163613519 -54423639 + L2 LINE L2 3136 3271 -1 374 238 123 33 chr3 163613853 163613975 -54423183 - MIR3 SINE MIR -54 154 22 2079 136 7 0 chr3 163614031 163614340 -54422818 - AluSx SINE Alu -1 311 1 350 202 279 10 chr3 163614695 163614799 -54422359 + L2 LINE L2 3179 3310 -3 259 278 83 9 chr3 163615173 163615281 -54421877 - MIR SINE MIR -26 236 121 554 255 48 65 chr3 163616638 163616774 -54420384 + MIR SINE MIR 20 152 -110 1484 196 34 24 chr3 163616774 163617070 -54420088 + AluJb SINE Alu 4 302 -10 554 255 48 65 chr3 163617070 163617164 -54419994 + MIR SINE MIR 152 246 -16 209 173 222 0 chr3 163618181 163618236 -54418922 - MIR SINE MIR -115 93 27 308 260 146 36 chr3 163618260 163618452 -54418706 + MER112 DNA MER1_type 17 229 -31 201 96 96 0 chr3 163618462 163618514 -54418644 + (CACTG)n Simple_repeat Simple_repeat 3 59 0 23 0 0 0 chr3 163621030 163621053 -54416105 + AT_rich Low_complexity Low_complexity 1 23 0 2332 79 3 41 chr3 163621321 163621639 -54415519 + AluSx SINE Alu 1 306 -6 1040 296 94 22 chr3 163621642 163622057 -54415101 - L2 LINE L2 -1541 1773 1329 208 358 15 0 chr3 163622038 163622105 -54415053 - L2 LINE L2 -56 3216 3149 * 1311 195 23 0 chr3 163622270 163622485 -54414673 - MER58A DNA MER1_type -4 220 1 1891 114 92 0 chr3 163622686 163622957 -54414201 - AluSx SINE Alu -16 296 1 850 194 6 44 chr3 163623091 163623271 -54413887 + MER5B DNA MER1_type 1 173 -5 219 36 0 0 chr3 163623455 163623483 -54413675 + (TTG)n Simple_repeat Simple_repeat 2 29 0 851 215 165 32 chr3 163623795 163624074 -54413084 + L1ME3A LINE L1 5850 6165 -5 182 269 151 11 chr3 163625641 163625734 -54411424 - MIR SINE MIR -111 151 46 183 232 89 0 chr3 163626290 163626346 -54410812 - L2 LINE L2 -6 3266 3206 250 341 75 52 chr3 163626998 163627265 -54409893 - L2 LINE L2 -84 3188 2916 460 275 33 0 chr3 163627634 163627754 -54409404 - MIR SINE MIR -65 197 74 448 272 15 37 chr3 163628985 163629121 -54408037 - MIR SINE MIR -19 243 111 21 0 0 0 chr3 163629225 163629246 -54407912 + AT_rich Low_complexity Low_complexity 1 21 0 556 264 79 17 chr3 163629352 163629530 -54407628 + MIR SINE MIR 22 210 -52 555 247 107 35 chr3 163629583 163630043 -54407115 + MLT1H1 LTR MaLR 22 555 0 204 286 127 48 chr3 163630464 163630590 -54406568 - L3b LINE CR1 -1 1582 1447 481 200 9 19 chr3 163630983 163631088 -54406070 - U13 snRNA snRNA 0 104 1 180 77 0 0 chr3 163631113 163631139 -54406019 + (TC)n Simple_repeat Simple_repeat 1 26 0 315 0 0 0 chr3 163631139 163631174 -54405984 + (TG)n Simple_repeat Simple_repeat 2 36 0 649 255 130 14 chr3 163631674 163631882 -54405276 - MIR SINE MIR 0 262 31 709 315 101 47 chr3 163633158 163633870 -54403288 + L2 LINE L2 2545 3311 -2 329 301 26 0 chr3 163634859 163634972 -54402186 + MIR SINE MIR 79 194 -68 1437 45 0 2 chr3 163634976 163635218 -54401940 + AluY SINE Alu 18 306 -5 232 318 0 0 chr3 163635226 163635292 -54401866 + MIR SINE MIR 197 262 0 389 295 36 22 chr3 163635407 163635503 -54401655 + L2 LINE L2 2955 3055 -217 2590 59 0 0 chr3 163635503 163635807 -54401351 + AluY SINE Alu 1 304 -7 389 295 36 22 chr3 163635807 163635849 -54401309 + L2 LINE L2 3055 3095 -177 459 275 23 58 chr3 163636266 163636437 -54400721 + MIR SINE MIR 48 212 -50 390 221 168 0 chr3 163637562 163637657 -54399501 - MIR SINE MIR -106 156 46 211 318 63 48 chr3 163638492 163638618 -54398540 + L2 LINE L2 3185 3312 -1 25 0 0 0 chr3 163638675 163638700 -54398458 + AT_rich Low_complexity Low_complexity 1 25 0 259 255 94 9 chr3 163638711 163638817 -54398341 + L1ME LINE L1 5734 5848 -273 * 7482 34 0 0 chr3 163638797 163639684 -54397474 - L1PA3 LINE L1 -983 5163 4277 7528 47 4 7 chr3 163639685 163640699 -54396459 + L1PA3 LINE L1 5143 6155 0 979 170 38 71 chr3 163640927 163641215 -54395943 + L1ME LINE L1 5243 5520 -642 2284 109 0 0 chr3 163641402 163641695 -54395463 - AluSx SINE Alu -9 303 11 1090 236 97 78 chr3 163641707 163642428 -54394730 - HAL1 LINE L1 -965 1542 808 514 315 5 38 chr3 163643686 163643870 -54393288 + MER5B DNA MER1_type 1 178 0 239 216 20 0 chr3 163644353 163644404 -54392754 - MIR SINE MIR -124 138 87 1620 161 14 27 chr3 163645770 163646062 -54391096 - AluJo SINE Alu -22 290 3 373 217 70 42 chr3 163646118 163646261 -54390897 - LTR33 LTR ERVL -2 519 373 330 288 78 42 chr3 163646322 163646513 -54390645 - LTR33 LTR ERVL -270 251 54 1165 231 4 21 chr3 163646609 163646851 -54390307 - MER8 DNA MER2_type 0 239 2 608 227 184 0 chr3 163647064 163647205 -54389953 + MER5A DNA MER1_type 1 167 -22 232 167 167 56 chr3 163647795 163647867 -54389291 + MIR SINE MIR 64 143 -119 241 267 0 0 chr3 163648154 163648214 -54388944 + L2 LINE L2 3254 3313 0 217 253 92 11 chr3 163648223 163648310 -54388848 + MIR SINE MIR 114 207 -55 513 186 10 0 chr3 163648322 163648424 -54388734 + L1P LINE L1 4935 5037 -1109 534 209 0 75 chr3 163649005 163649109 -54388049 - MLT1F LTR MaLR -2 540 447 2291 107 0 0 chr3 163649109 163649408 -54387750 + AluSg SINE Alu 1 299 -11 534 209 0 75 chr3 163649408 163649437 -54387721 - MLT1F LTR MaLR -95 447 417 198 256 93 0 chr3 163649437 163649480 -54387678 - MIR SINE MIR -168 94 48 259 256 58 0 chr3 163649576 163649662 -54387496 - MER5A DNA MER1_type -84 105 15 1600 180 15 114 chr3 163651076 163651481 -54385677 + MLT1A1 LTR MaLR 1 365 0 274 315 0 0 chr3 163651556 163651645 -54385513 - Charlie7 DNA MER1_type -2523 89 1 543 277 48 11 chr3 163651695 163651883 -54385275 + MIR SINE MIR 68 262 0 843 210 54 116 chr3 163651906 163652353 -54384805 + LTR37B LTR ERV1 4 422 -46 195 354 38 0 chr3 163652941 163653020 -54384138 - MIR SINE MIR -2 260 179 5504 179 22 23 chr3 163653025 163654943 -54382215 - L1MB2 LINE L1 0 6451 4536 207 0 0 0 chr3 163654943 163654966 -54382192 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5504 179 22 23 chr3 163654966 163655089 -54382069 - L1MB2 LINE L1 -1915 4536 4414 348 281 45 0 chr3 163655092 163655181 -54381977 - MIR SINE MIR -112 150 58 1475 173 47 40 chr3 163655383 163655684 -54381474 - AluJo SINE Alu -5 307 5 190 200 50 0 chr3 163655864 163655904 -54381254 - MIR3 SINE MIR -4 204 163 207 176 0 0 chr3 163655943 163655977 -54381181 + CT-rich Low_complexity Low_complexity 3 36 0 306 0 0 0 chr3 163656147 163656181 -54380977 + (CA)n Simple_repeat Simple_repeat 1 34 0 232 290 7 84 chr3 163656811 163656966 -54380192 - MIR SINE MIR -26 236 94 452 211 21 0 chr3 163658179 163658274 -54378884 - MER20B DNA MER1_type -2 781 685 1728 183 58 23 chr3 163658376 163658775 -54378383 - LTR37A LTR ERV1 0 426 14 1211 314 46 13 chr3 163658789 163659314 -54377844 - MER20B DNA MER1_type -241 542 1 354 212 0 47 chr3 163659758 163659843 -54377315 - Charlie8 DNA MER1_type -2252 165 85 528 286 45 0 chr3 163659986 163660119 -54377039 - MIR SINE MIR -89 173 35 5198 145 80 37 chr3 163661947 163662977 -54374181 - L1MC1 LINE L1 -6 6327 5254 2552 223 98 4 chr3 163662984 163663304 -54373854 - L1MB2 LINE L1 -3099 3327 3038 1986 140 0 104 chr3 163663304 163663690 -54373468 + MER7A DNA MER2_type 3 346 0 2552 223 98 4 chr3 163663690 163664351 -54372807 - L1MB2 LINE L1 -3388 3038 2248 1133 150 0 22 chr3 163664394 163664574 -54372584 - AluJb SINE Alu -15 297 122 1759 143 277 83 chr3 163664579 163664636 -54372522 - L1MCa LINE L1 -4293 2133 2088 2593 63 0 0 chr3 163664636 163664939 -54372219 - AluY SINE Alu -8 303 1 1759 143 277 83 chr3 163664939 163665039 -54372119 - L1MCa LINE L1 -4338 2088 2009 2325 81 3 13 chr3 163665039 163665346 -54371812 + AluSc SINE Alu 1 304 -5 1759 143 277 83 chr3 163665346 163665717 -54371441 - L1MCa LINE L1 -4417 2009 1501 4643 146 31 6 chr3 163665719 163666450 -54370708 + Tigger2 DNA MER2_type 1 750 -1968 1040 121 24 0 chr3 163666515 163666680 -54370478 + Tigger2 DNA MER2_type 2443 2611 -107 257 357 200 7 chr3 163666881 163667021 -54370137 + L2 LINE L2 3102 3268 -4 578 288 119 34 chr3 163667248 163667602 -54369556 + LTR16C LTR ERVL 92 475 -16 1014 215 68 8 chr3 163669092 163669329 -54367829 - MIR SINE MIR -10 252 2 1704 181 69 23 chr3 163669340 163669688 -54367470 + MLT1A2 LTR MaLR 11 374 0 329 340 53 23 chr3 163670188 163670453 -54366705 - L1MC/D LINE L1 -1984 5824 5552 585 278 94 0 chr3 163670527 163670718 -54366440 + LTR67 LTR ERVL 86 294 -263 439 364 122 24 chr3 163670815 163671474 -54365684 + L2 LINE L2 2544 3272 0 197 279 0 0 chr3 163671527 163671570 -54365588 - MIR SINE MIR -130 78 36 597 218 118 7 chr3 163671691 163671841 -54365317 - MER20 DNA MER1_type -48 171 7 185 189 0 0 chr3 163671989 163672026 -54365132 + MIR SINE MIR 103 139 -123 3007 182 27 3 chr3 163672213 163672972 -54364186 - L1M1 LINE L1 -743 5403 4708 893 186 125 22 chr3 163672972 163673283 -54363875 - L1MC5 LINE L1 -408 7553 7211 2172 127 21 32 chr3 163673369 163673747 -54363411 + THE1C LTR MaLR 1 374 -1 854 170 16 16 chr3 163674320 163674508 -54362650 - LTR41 LTR ERVL -585 188 1 422 149 32 11 chr3 163674508 163674602 -54362556 - L1MC5 LINE L1 -746 7215 7120 384 214 174 42 chr3 163674892 163675044 -54362114 - MIR SINE MIR -52 210 36 222 62 0 0 chr3 163675516 163675548 -54361610 + (TGGGGG)n Simple_repeat Simple_repeat 1 32 0 189 107 0 0 chr3 163676379 163676407 -54360751 + (A)n Simple_repeat Simple_repeat 1 28 0 24 0 0 0 chr3 163676480 163676504 -54360654 + AT_rich Low_complexity Low_complexity 1 24 0 218 231 39 0 chr3 163676542 163676594 -54360564 + (ATGGTG)n Simple_repeat Simple_repeat 5 58 0 356 199 252 8 chr3 163676710 163676841 -54360317 - MER5A DNA MER1_type 0 189 27 226 264 0 0 chr3 163676884 163676937 -54360221 - MER63 DNA MER1_type -54 782 730 876 78 0 21 chr3 163677354 163677496 -54359662 + (TTCC)n Simple_repeat Simple_repeat 2 140 0 2000 136 0 0 chr3 163677500 163677780 -54359378 - AluSx SINE Alu -32 280 1 205 177 0 48 chr3 163678015 163678077 -54359081 + CT-rich Low_complexity Low_complexity 6 64 0 1056 216 131 46 chr3 163678221 163678679 -54358479 + L1ME3A LINE L1 5669 6165 -5 2110 104 0 10 chr3 163678698 163678986 -54358172 + AluSx SINE Alu 1 285 -27 333 0 0 0 chr3 163678986 163679023 -54358135 + (CA)n Simple_repeat Simple_repeat 2 38 0 190 0 67 0 chr3 163679024 163679054 -54358104 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1555 214 23 6 chr3 163679278 163679624 -54357534 + MLT1A1 LTR MaLR 10 361 -4 307 284 21 21 chr3 163679643 163679738 -54357420 - MIR3 SINE MIR -29 179 85 7052 48 0 12 chr3 163679743 163680740 -54356418 - L1PA6 LINE L1 0 6154 5154 626 293 48 26 chr3 163681006 163681276 -54355882 - MLT1I LTR MaLR -44 365 90 271 105 105 0 chr3 163681387 163681444 -54355714 + L1MB8 LINE L1 6114 6176 -2 23 54 0 0 chr3 163682099 163682136 -54355022 + AT_rich Low_complexity Low_complexity 1 37 0 1711 180 0 62 chr3 163682604 163682926 -54354232 + AluJo SINE Alu 1 302 -10 2460 84 3 0 chr3 163683610 163683942 -54353216 + AluSp SINE Alu 1 333 0 1165 247 64 15 chr3 163684249 163684654 -54352504 + MER113 DNA MER1_type? 83 507 -14 2233 261 74 29 chr3 163684657 163685766 -54351392 + L1ME3 LINE L1 3062 4220 -1926 243 136 0 23 chr3 163685823 163685867 -54351291 + L1ME3 LINE L1 4545 4587 -1559 411 249 46 66 chr3 163686524 163686721 -54350437 - LTR67 LTR ERVL -5 552 360 268 308 41 35 chr3 163686765 163686934 -54350224 - LTR67 LTR ERVL -336 221 52 391 288 24 24 chr3 163687032 163687157 -54350001 + MER5A DNA MER1_type 54 178 -11 330 119 0 34 chr3 163687365 163687424 -54349734 + MSTD LTR MaLR 1 57 -339 1097 219 47 17 chr3 163687530 163687889 -54349269 + L1ME3 LINE L1 4965 5331 -815 968 181 6 23 chr3 163687889 163688066 -54349092 + FRAM SINE Alu 1 168 -8 2395 224 35 13 chr3 163688068 163688675 -54348483 + L1ME3 LINE L1 5327 5946 -216 2855 10 0 0 chr3 163688905 163689216 -54347942 + AluY SINE Alu 1 311 0 1757 194 9 9 chr3 163690151 163690481 -54346677 + MSTD LTR MaLR 67 396 0 206 200 22 0 chr3 163690482 163690527 -54346631 + MIR SINE MIR 112 157 -105 299 279 12 0 chr3 163690533 163690619 -54346539 - MLT1I LTR MaLR 0 409 323 6384 143 19 8 chr3 163690630 163691953 -54345205 - L1MC1 LINE L1 -17 6552 5213 3254 235 23 4 chr3 163692064 163692966 -54344192 - L1MC1 LINE L1 -1729 4653 3735 2042 123 0 0 chr3 163692998 163693283 -54343875 - AluSx SINE Alu -27 285 1 296 200 12 0 chr3 163693316 163693396 -54343762 + (TA)n Simple_repeat Simple_repeat 1 81 0 198 0 0 0 chr3 163693395 163693417 -54343741 + (CA)n Simple_repeat Simple_repeat 2 23 0 * 2846 246 10 8 chr3 163693417 163694324 -54342834 - L1MC1 LINE L1 -2673 3709 2801 2172 190 44 6 chr3 163694321 163694820 -54342338 - L1 LINE L1 -1779 4367 3850 * 2237 185 51 2 chr3 163694823 163695251 -54341907 - L1MC1 LINE L1 -5916 468 20 551 273 21 21 chr3 163695246 163695488 -54341670 - L1 LINE L1 -3633 2513 2272 * 1164 151 95 7 chr3 163695475 163695816 -54341342 + L1MCa LINE L1 1927 2346 -4080 688 167 13 0 chr3 163695950 163696106 -54341052 + L1MCa LINE L1 2293 2450 -3976 586 245 35 10 chr3 163696106 163696306 -54340852 - MLT1A1 LTR MaLR 0 365 161 342 237 74 15 chr3 163696412 163696547 -54340611 - MLT1J2 LTR MaLR -238 212 70 235 255 20 0 chr3 163696593 163696644 -54340514 + MIR SINE MIR 159 210 -52 421 312 103 24 chr3 163697402 163697655 -54339503 - L1ME4a LINE L1 -197 5924 5652 831 216 59 20 chr3 163698650 163698854 -54338304 - MIR SINE MIR -44 218 7 580 352 12 27 chr3 163698921 163699177 -54337981 + MIR SINE MIR 2 253 -9 390 283 141 11 chr3 163700198 163700375 -54336783 - MIR3 SINE MIR -5 203 4 1661 65 5 0 chr3 163700862 163701061 -54336097 - AluY SINE Alu -16 295 96 281 257 77 0 chr3 163701068 163701169 -54335989 - MIR SINE MIR -67 141 22 333 302 88 5 chr3 163702128 163702261 -54334897 + MIR SINE MIR 9 147 -63 1209 235 38 32 chr3 163703092 163703433 -54333725 + MLT1J LTR MaLR 26 368 -143 838 154 0 0 chr3 163703439 163703569 -54333589 - LTR39 LTR ERV1 0 783 654 200 138 0 0 chr3 163703618 163703647 -54333511 - MIR SINE MIR -67 141 113 418 282 24 32 chr3 163703800 163703924 -54333234 + MER5A DNA MER1_type 63 185 -4 1820 203 48 2 chr3 163704254 163704672 -54332486 - MER110 LTR ERV1 -7 484 48 21 0 0 0 chr3 163704675 163704696 -54332462 + AT_rich Low_complexity Low_complexity 1 21 0 345 290 68 56 chr3 163704829 163704991 -54332167 - MIR SINE MIR -87 175 12 538 227 262 0 chr3 163705797 163705938 -54331220 + MER5B DNA MER1_type 1 178 0 1099 172 0 21 chr3 163705946 163706138 -54331020 + MER5A DNA MER1_type 1 188 -1 3592 128 69 10 chr3 163706539 163707119 -54330039 + LTR18B LTR ERVL 1 614 0 206 316 13 0 chr3 163707573 163707649 -54329509 + L2 LINE L2 1492 1568 -1746 339 348 152 3 chr3 163707819 163708141 -54329017 + L2 LINE L2 1653 2022 -1292 358 246 173 0 chr3 163708152 163708262 -54328896 + L2 LINE L2 3185 3313 0 552 306 94 52 chr3 163708375 163708800 -54328358 + L2 LINE L2 2008 2450 -864 3913 133 51 26 chr3 163709115 163709880 -54327278 - L1MA7 LINE L1 0 6291 5508 555 263 96 12 chr3 163709885 163710125 -54327033 - HAL1 LINE L1 -960 1547 1288 24 0 0 0 chr3 163710131 163710155 -54327003 + AT_rich Low_complexity Low_complexity 1 24 0 478 269 119 31 chr3 163710205 163710491 -54326667 - HAL1 LINE L1 -1562 945 635 595 330 77 58 chr3 163710585 163711082 -54326076 - HAL1 LINE L1 -2001 506 1 1477 297 126 13 chr3 163711089 163711691 -54325467 - L2 LINE L2 -857 2457 1788 182 309 0 0 chr3 163711710 163711752 -54325406 + L2 LINE L2 3179 3220 -52 24 32 0 0 chr3 163711876 163711907 -54325251 + AT_rich Low_complexity Low_complexity 1 31 0 791 214 73 5 chr3 163711907 163712127 -54325031 - MER33 DNA MER1_type -83 241 7 1738 154 33 7 chr3 163713272 163713544 -54323614 + AluJo SINE Alu 1 279 -33 2508 101 8 16 chr3 163713544 163713910 -54323248 - THE1B LTR MaLR -1 363 1 1177 91 34 0 chr3 163714645 163714820 -54322338 + MER30 DNA MER1_type 1 181 -49 771 104 0 0 chr3 163714817 163714923 -54322235 + MER30 DNA MER1_type 125 230 0 * 271 219 62 0 chr3 163714987 163715051 -54322107 + CT-rich Low_complexity Low_complexity 6 73 0 281 211 18 18 chr3 163715406 163715463 -54321695 + L2 LINE L2 3248 3304 -9 267 236 0 0 chr3 163715660 163715715 -54321443 + L3b LINE CR1 1191 1245 -338 413 296 39 30 chr3 163715908 163716141 -54321017 - MER112 DNA MER1_type -25 235 1 263 280 186 5 chr3 163716210 163716403 -54320755 - L1ME LINE L1 -292 5829 5602 407 318 71 30 chr3 163717100 163717498 -54319660 + LTR16B LTR ERVL 1 423 -27 444 291 152 6 chr3 163718545 163718703 -54318455 - MER5A DNA MER1_type 0 189 9 612 231 88 0 chr3 163718948 163719108 -54318050 - MER113 DNA MER1_type? -40 481 308 261 214 0 0 chr3 163719111 163719167 -54317991 - MLT1L LTR MaLR -8 607 552 247 326 67 34 chr3 163719275 163719453 -54317705 - MLT1L LTR MaLR -240 375 192 532 279 39 45 chr3 163719549 163719857 -54317301 - MER113 DNA MER1_type? -212 309 4 589 217 60 12 chr3 163719969 163720135 -54317023 - MER5B DNA MER1_type -4 174 1 1733 187 74 81 chr3 163720216 163720831 -54316327 + LTR38B LTR ERV1 1 611 0 214 254 127 0 chr3 163721770 163721825 -54315333 - L2 LINE L2 -5 3308 3247 953 158 7 0 chr3 163722568 163722745 -54314413 + AluSg/x SINE Alu 137 314 0 2472 134 106 2 chr3 163722745 163723170 -54313988 + L1MA4 LINE L1 5827 6295 -5 362 180 72 27 chr3 163723181 163723292 -54313866 + L1MC5 LINE L1 7544 7659 -302 546 212 143 22 chr3 163723312 163723543 -54313615 + L1MC5 LINE L1 7609 7867 -94 210 37 0 0 chr3 163723580 163723607 -54313551 + (A)n Simple_repeat Simple_repeat 1 27 0 660 294 97 44 chr3 163723681 163723772 -54313386 + L1ME4a LINE L1 5460 5545 -576 2377 66 28 0 chr3 163723772 163724059 -54313099 - AluY SINE Alu -16 295 1 660 294 97 44 chr3 163724059 163724420 -54312738 + L1ME4a LINE L1 5545 5936 -185 211 337 24 0 chr3 163724803 163724886 -54312272 - MIR3 SINE MIR -15 193 109 2422 81 0 37 chr3 163724937 163725260 -54311898 + AluY SINE Alu 1 311 0 315 287 43 26 chr3 163725693 163725808 -54311350 + MIR3 SINE MIR 3 119 -89 510 200 121 7 chr3 163726019 163726159 -54310999 + MER117 DNA MER1_type 1 156 -41 31 0 0 0 chr3 163726845 163726876 -54310282 + AT_rich Low_complexity Low_complexity 1 31 0 509 208 104 0 chr3 163727227 163727352 -54309806 + MIR SINE MIR 123 260 -2 200 324 45 27 chr3 163727533 163727644 -54309514 - MIR SINE MIR -77 131 19 1392 123 127 34 chr3 163729446 163729714 -54307444 + MER44D DNA MER2_type 4 566 -43 233 262 71 40 chr3 163730387 163730513 -54306645 + MIR SINE MIR 19 148 -60 193 324 170 29 chr3 163731360 163731601 -54305557 - L2 LINE L2 -51 3221 2947 511 230 54 51 chr3 163731827 163732043 -54305115 + L1MC4a LINE L1 5714 5828 -477 2320 98 10 0 chr3 163732706 163733011 -54304147 - AluSq SINE Alu -5 308 1 1275 315 44 13 chr3 163733787 163734476 -54302682 - HERV16 LTR ERVL -2883 2113 1346 874 299 64 59 chr3 163734891 163735536 -54301622 - HERV16 LTR ERVL -4348 648 1 887 199 158 38 chr3 163735536 163735828 -54301330 - LTR16C LTR ERVL 0 491 165 448 275 25 53 chr3 163736454 163736647 -54300511 - MIR SINE MIR -46 216 31 283 88 18 18 chr3 163736888 163736945 -54300213 + (CA)n Simple_repeat Simple_repeat 1 57 0 201 267 29 9 chr3 163736948 163737053 -54300105 + (CTCA)n Simple_repeat Simple_repeat 2 108 0 * 391 278 6 6 chr3 163737025 163737102 -54300056 + CT-rich Low_complexity Low_complexity 1 77 -103 183 80 0 0 chr3 163737102 163737127 -54300031 + (CA)n Simple_repeat Simple_repeat 1 25 0 391 278 6 6 chr3 163737127 163737229 -54299929 + CT-rich Low_complexity Low_complexity 76 180 0 410 73 0 15 chr3 163737262 163737330 -54299828 + (CA)n Simple_repeat Simple_repeat 1 67 0 27 29 0 0 chr3 163737812 163737846 -54299312 + AT_rich Low_complexity Low_complexity 1 34 0 275 303 130 40 chr3 163738367 163738691 -54298467 + MARNA DNA Mariner 14 366 -220 2155 126 7 3 chr3 163740064 163740460 -54296698 + AluSx SINE Alu 1 397 0 356 303 28 0 chr3 163740542 163740651 -54296507 + MARNA DNA Mariner 415 526 -60 1616 276 43 39 chr3 163740839 163741400 -54295758 - MLT1E LTR MaLR -16 577 15 265 253 96 0 chr3 163741542 163741625 -54295533 - L2 LINE L2 0 3313 3223 1658 169 10 23 chr3 163743605 163743754 -54293404 + L1MB4 LINE L1 5275 5420 -754 2113 140 0 6 chr3 163743754 163744068 -54293090 + AluSx SINE Alu 1 312 0 1658 169 10 23 chr3 163744068 163744219 -54292939 + L1MB4 LINE L1 5420 5571 -603 1336 136 55 17 chr3 163744219 163744454 -54292704 + AluSg/x SINE Alu 67 310 -2 3101 154 14 38 chr3 163744465 163744536 -54292622 + L1MB4 LINE L1 5609 5680 -500 1724 158 3 40 chr3 163744536 163744834 -54292324 + AluJo SINE Alu 1 288 -24 279 0 0 0 chr3 163744834 163744865 -54292293 + (CAAG)n Simple_repeat Simple_repeat 2 32 0 1724 158 3 40 chr3 163744865 163744888 -54292270 + AluJo SINE Alu 288 310 -2 3101 154 14 38 chr3 163744888 163745392 -54291766 + L1MB4 LINE L1 5680 6170 -10 665 238 128 34 chr3 163745583 163745818 -54291340 + MIR SINE MIR 2 258 -4 1500 214 132 83 chr3 163746239 163746855 -54290303 + MLT1E1 LTR MaLR 1 646 -8 922 285 168 3 chr3 163747113 163747140 -54290018 - MER20B DNA MER1_type -159 624 603 281 47 23 0 chr3 163747140 163747183 -54289975 + (TA)n Simple_repeat Simple_repeat 2 45 0 922 285 168 3 chr3 163747183 163747646 -54289512 - MER20B DNA MER1_type -180 603 19 308 293 79 36 chr3 163749157 163749322 -54287836 + HsTC2 DNA Tc2 7 1896 -2 1156 180 30 30 chr3 163749478 163749711 -54287447 - MLT1A2 LTR MaLR 0 374 142 933 158 19 6 chr3 163749744 163749902 -54287256 - MLT1A2 LTR MaLR -214 160 1 370 349 130 32 chr3 163749957 163750435 -54286723 + L3 LINE CR1 533 1068 -509 790 188 72 90 chr3 163750435 163750658 -54286500 - MER20B DNA MER1_type 0 219 1 370 349 130 32 chr3 163750658 163750703 -54286455 + L3 LINE CR1 1068 1107 -470 253 304 75 28 chr3 163751268 163751482 -54285676 - L1MC5 LINE L1 -31 7930 7707 249 290 0 0 chr3 163751549 163751611 -54285547 + G-rich Low_complexity Low_complexity 2 63 0 631 271 49 13 chr3 163752031 163752256 -54284902 - MIR SINE MIR -25 237 5 372 265 69 0 chr3 163752465 163752567 -54284591 + MIR SINE MIR 13 121 -141 231 258 0 15 chr3 163752904 163752970 -54284188 + MER81 DNA DNA 49 113 -1 368 283 50 25 chr3 163753522 163753681 -54283477 - L1MC4 LINE L1 -132 7910 7748 658 172 40 85 chr3 163753803 163753874 -54283284 - MER110A LTR ERV1 -6 462 389 2022 164 0 0 chr3 163753874 163754184 -54282974 + AluSx SINE Alu 1 310 -2 658 172 40 85 chr3 163754184 163754298 -54282860 - MER110A LTR ERV1 -79 389 281 237 83 0 0 chr3 163754472 163754508 -54282650 + (GGA)n Simple_repeat Simple_repeat 1 36 0 669 257 44 98 chr3 163754737 163755075 -54282083 - MLT1J LTR MaLR -5 506 187 21 0 0 0 chr3 163756289 163756310 -54280848 + AT_rich Low_complexity Low_complexity 1 21 0 242 182 182 0 chr3 163756804 163756859 -54280299 + MLT1L LTR MaLR 1 65 -550 380 287 84 29 chr3 163756904 163757246 -54279912 + MLT1J LTR MaLR 111 510 -1 2433 234 33 13 chr3 163757303 163757847 -54279311 - MLT1H1 LTR MaLR 0 555 1 1133 232 122 50 chr3 163758056 163758591 -54278567 - MER34C LTR ERV1 0 585 13 456 305 66 7 chr3 163758722 163758873 -54278285 + MIR3 SINE MIR 42 201 -7 26 0 0 0 chr3 163759613 163759639 -54277519 + AT_rich Low_complexity Low_complexity 1 26 0 234 329 121 7 chr3 163759957 163760097 -54277061 - MIR SINE MIR 0 262 107 1084 247 53 0 chr3 163760880 163761200 -54275958 - L1M4 LINE L1 -1563 4583 4247 253 216 20 0 chr3 163761422 163761473 -54275685 + Tigger5 DNA MER2_type 28 79 -2244 333 189 0 0 chr3 163761482 163761535 -54275623 + Tigger5 DNA MER2_type 2271 2323 0 1205 175 78 73 chr3 163761559 163762121 -54275037 - LTR34 LTR ERV1 -4 695 1 259 253 30 86 chr3 163763173 163763327 -54273831 + L1MEc LINE L1 791 925 -5471 1776 164 10 23 chr3 163763327 163763637 -54273521 + AluJb SINE Alu 5 310 -2 259 253 30 86 chr3 163763637 163763751 -54273407 + L1MEc LINE L1 925 1044 -5352 824 126 55 0 chr3 163763764 163763891 -54273267 + AluJo SINE Alu 1 134 -178 390 264 93 40 chr3 163763893 163764149 -54273009 + L1MEc LINE L1 941 1182 -5129 2754 133 39 10 chr3 163764149 163764562 -54272596 + MSTB LTR MaLR 2 426 0 390 264 93 40 chr3 163764562 163764760 -54272398 + L1MEc LINE L1 1182 1449 -4862 1267 215 8 0 chr3 163764960 163765197 -54271961 + L1MC1 LINE L1 21 259 -6167 * 6348 181 76 63 chr3 163765196 163765502 -54271656 + L1MC1 LINE L1 777 1078 -5348 1864 150 0 11 chr3 163765502 163765788 -54271370 + AluJb SINE Alu 1 283 -29 6348 181 76 63 chr3 163765788 163767949 -54269209 + L1MC1 LINE L1 1078 3272 -3154 2743 122 12 16 chr3 163767949 163768375 -54268783 + MSTA LTR MaLR 1 360 -4 1127 254 90 18 chr3 163769456 163769790 -54267368 + MLT1I LTR MaLR 8 365 -44 1341 74 0 11 chr3 163770056 163770246 -54266912 + L1P LINE L1 5154 5341 -805 6476 161 54 5 chr3 163770347 163772215 -54264943 + L1MC1 LINE L1 4652 6612 -1 476 264 27 27 chr3 163772196 163772416 -54264742 + L1ME LINE L1 4372 4591 -1555 * 353 279 85 0 chr3 163772421 163772550 -54264608 + L1ME LINE L1 4637 4776 -1370 4503 154 47 26 chr3 163772557 163774169 -54262989 - L1MA7 LINE L1 0 6291 4560 1257 286 45 4 chr3 163774186 163774990 -54262168 + L1ME LINE L1 4796 5634 -528 422 230 268 21 chr3 163775955 163776194 -54260964 + L2 LINE L2 3013 3310 -3 268 250 88 12 chr3 163777133 163777213 -54259945 - MLT1J2 LTR MaLR -13 437 352 308 233 99 46 chr3 163777304 163777504 -54259654 - MLT1J2 LTR MaLR -198 211 1 310 146 36 146 chr3 163777842 163777952 -54259206 + MLT1J1 LTR MaLR 43 140 -306 1701 84 0 0 chr3 163777993 163778208 -54258950 + AluSx SINE Alu 5 219 -93 233 111 0 0 chr3 163778224 163778260 -54258898 + Alu SINE Alu 182 217 -83 233 111 0 0 chr3 163778276 163778312 -54258846 + Alu SINE Alu 184 219 -83 233 111 0 0 chr3 163778328 163778364 -54258794 + Alu SINE Alu 182 217 -83 233 111 0 0 chr3 163778380 163778416 -54258742 + Alu SINE Alu 184 219 -84 241 83 0 0 chr3 163778432 163778468 -54258690 + Alu SINE Alu 182 217 -82 886 103 0 0 chr3 163778484 163778610 -54258548 + AluSg/x SINE Alu 184 309 -3 229 301 0 14 chr3 163779563 163779636 -54257522 + MER5A DNA MER1_type 96 167 -22 25 0 0 0 chr3 163780598 163780623 -54256535 + AT_rich Low_complexity Low_complexity 1 25 0 273 283 57 57 chr3 163780696 163780802 -54256356 - MIR3 SINE MIR -6 202 97 1230 277 63 25 chr3 163780843 163781240 -54255918 + LTR16A LTR ERVL 25 436 -14 433 250 45 0 chr3 163782005 163782117 -54255041 + MIR SINE MIR 76 192 -70 391 241 103 9 chr3 163783285 163783401 -54253757 - MIR SINE MIR -6 256 130 271 294 88 23 chr3 163783468 163783607 -54253551 + MIR3 SINE MIR 32 178 -30 300 164 13 59 chr3 163783785 163783883 -54253275 - L1MA4A LINE L1 -185 6115 6024 * 5998 128 15 16 chr3 163783865 163785012 -54252146 - L1PB1 LINE L1 -3 6148 4996 322 330 9 0 chr3 163785551 163785663 -54251495 - MIR3 SINE MIR -9 199 87 1417 185 20 118 chr3 163786639 163787044 -54250114 - MLT1A1 LTR MaLR 0 365 1 227 299 39 26 chr3 163787654 163787731 -54249427 + L2 LINE L2 2588 2665 -649 252 347 138 39 chr3 163787761 163788144 -54249014 + L2 LINE L2 2851 3271 -1 24 0 0 0 chr3 163788919 163788943 -54248215 + AT_rich Low_complexity Low_complexity 1 24 0 604 27 0 27 chr3 163789327 163789402 -54247756 - L1PA6 LINE L1 -3 6151 6079 829 89 0 0 chr3 163789402 163789514 -54247644 + L1PA7 LINE L1 5797 5908 -246 883 164 4 148 chr3 163789795 163790039 -54247119 - MER3 DNA MER1_type 0 209 1 430 233 143 15 chr3 163790227 163790360 -54246798 - MIR SINE MIR 0 262 113 655 224 149 11 chr3 163790406 163790580 -54246578 + MIR SINE MIR 21 218 -44 193 241 204 0 chr3 163790609 163790663 -54246495 - MIR SINE MIR -124 138 74 217 284 0 45 chr3 163790882 163790949 -54246209 + MIR3 SINE MIR 136 199 -9 222 128 0 0 chr3 163791029 163791068 -54246090 + (T)n Simple_repeat Simple_repeat 1 39 0 545 226 0 19 chr3 163792101 163792207 -54244951 - MER5A DNA MER1_type -76 113 10 2673 192 10 6 chr3 163792339 163792850 -54244308 + L1MB8 LINE L1 5519 6031 -147 2438 208 53 24 chr3 163843078 163843627 -54193531 - MLT1F1 LTR MaLR 0 567 3 2289 217 35 62 chr3 163843654 163844259 -54192899 + L1MC4a LINE L1 7086 7669 -139 1700 184 0 16 chr3 163844259 163844563 -54192595 - AluJb SINE Alu -13 299 1 2289 217 35 62 chr3 163844563 163844700 -54192458 + L1MC4a LINE L1 7669 7808 0 1973 118 29 0 chr3 163844753 163845033 -54192125 + AluSx SINE Alu 1 288 -24 275 308 133 0 chr3 163845157 163845277 -54191881 + L2 LINE L2 2638 2773 -541 244 183 28 84 chr3 163845343 163845414 -54191744 + L2 LINE L2 2897 2963 -309 1763 224 39 34 chr3 163845717 163846254 -54190904 - MLT1F LTR MaLR -2 540 1 2852 13 0 0 chr3 163846387 163846700 -54190458 + AluYb8 SINE Alu 1 313 -5 2413 88 0 13 chr3 163847441 163847749 -54189409 - AluSp SINE Alu -9 304 1 23 0 0 0 chr3 163847974 163847997 -54189161 + AT_rich Low_complexity Low_complexity 1 23 0 411 273 106 15 chr3 163848619 163848751 -54188407 + MIR SINE MIR 56 199 -63 650 215 169 32 chr3 163848776 163848995 -54188163 + MIR SINE MIR 2 250 -12 502 320 167 22 chr3 163849064 163849286 -54187872 + MIR SINE MIR 1 254 -8 241 306 56 49 chr3 163850709 163850853 -54186305 - L2 LINE L2 -40 3232 3088 731 199 106 18 chr3 163850955 163851181 -54185977 + MER5C DNA MER1_type 78 323 -1 268 200 20 0 chr3 163851235 163851285 -54185873 + MER81 DNA DNA 64 114 0 330 303 23 30 chr3 163851319 163851451 -54185707 + HAL1 LINE L1 1248 1378 -1129 301 247 114 12 chr3 163852661 163852827 -54184331 + L1ME4a LINE L1 5936 6118 -3 356 248 238 24 chr3 163852947 163853153 -54184005 + MIR SINE MIR 3 252 -10 237 261 43 0 chr3 163854881 163854950 -54182208 - MIR3 SINE MIR -3 205 134 345 303 124 14 chr3 163855030 163855175 -54181983 + MIR SINE MIR 13 173 -89 352 308 18 41 chr3 163855302 163855471 -54181687 + MIR SINE MIR 74 238 -24 223 286 54 0 chr3 163856071 163856127 -54181031 + L2 LINE L2 2996 3054 -218 388 310 98 11 chr3 163856302 163856476 -54180682 - L2 LINE L2 -27 3286 3098 2290 118 74 48 chr3 163856763 163857129 -54180029 + MSTA LTR MaLR 1 381 -47 1831 141 27 34 chr3 163857129 163857426 -54179732 - AluSx SINE Alu -12 300 6 2290 118 74 48 chr3 163857426 163857476 -54179682 + MSTA LTR MaLR 381 428 0 1035 183 0 0 chr3 163857528 163857697 -54179461 - FAM SINE Alu -6 169 1 299 218 119 10 chr3 163857820 163857921 -54179237 - MER103 DNA DNA -47 119 8 23 33 0 0 chr3 163858249 163858279 -54178879 + AT_rich Low_complexity Low_complexity 1 30 0 22 70 0 0 chr3 163858483 163858526 -54178632 + AT_rich Low_complexity Low_complexity 1 43 0 2058 144 3 0 chr3 163858704 163859010 -54178148 + AluSq SINE Alu 1 307 -6 1499 213 57 40 chr3 163859745 163860301 -54176857 + L1ME3A LINE L1 4884 5475 -689 2048 126 3 3 chr3 163860356 163860670 -54176488 + AluSq SINE Alu 1 314 0 1984 224 48 42 chr3 163860802 163861129 -54176029 + L1ME3A LINE L1 5494 5818 -352 2000 155 0 10 chr3 163861129 163861438 -54175720 + AluSx SINE Alu 1 306 -6 1984 224 48 42 chr3 163861438 163861774 -54175384 + L1ME3A LINE L1 5818 6161 -9 1541 145 0 0 chr3 163862322 163862549 -54174609 + AluJb SINE Alu 86 312 0 239 125 0 56 chr3 163862581 163862653 -54174505 + (TTCTC)n Simple_repeat Simple_repeat 4 71 0 273 247 34 34 chr3 163864061 163864207 -54172951 - L1MC5 LINE L1 -13 7948 7803 26 0 0 0 chr3 163864230 163864256 -54172902 + AT_rich Low_complexity Low_complexity 1 26 0 2235 110 3 3 chr3 163864264 163864564 -54172594 + AluSg SINE Alu 1 300 -10 2369 80 23 0 chr3 163864786 163865087 -54172071 + AluSp SINE Alu 1 308 -5 328 241 48 96 chr3 163865545 163865668 -54171490 - MER5B DNA MER1_type 0 178 65 2210 81 3 24 chr3 163865668 163865963 -54171195 - AluSq SINE Alu -8 305 17 328 241 48 96 chr3 163865963 163866026 -54171132 - MER5B DNA MER1_type -113 65 1 27 29 0 0 chr3 163868096 163868130 -54169028 + AT_rich Low_complexity Low_complexity 1 34 0 195 229 267 9 chr3 163868994 163869099 -54168059 - MIR SINE MIR -6 256 125 306 278 12 18 chr3 163869270 163869467 -54167691 + C-rich Low_complexity Low_complexity 1 195 0 224 109 0 22 chr3 163869643 163869689 -54167469 + (CCCCCA)n Simple_repeat Simple_repeat 1 45 0 612 238 36 0 chr3 163870299 163870467 -54166691 + L1MEc LINE L1 1882 2055 -4341 559 252 13 7 chr3 163870467 163870618 -54166540 + L1MEc LINE L1 39 190 -6206 * 1396 194 70 72 chr3 163870611 163871122 -54166036 + L1ME1 LINE L1 5649 6158 -8 321 201 91 115 chr3 163871208 163871417 -54165741 + HAL1 LINE L1 2285 2488 -19 944 266 25 30 chr3 163871489 163871850 -54165308 - LTR16B LTR ERVL -72 392 34 2484 53 0 34 chr3 163871850 163872170 -54164988 - AluY SINE Alu -2 309 1 244 136 34 17 chr3 163872718 163872777 -54164381 + (TA)n Simple_repeat Simple_repeat 2 61 0 271 261 14 0 chr3 163872794 163872863 -54164295 - MER69 DNA AcHobo -1 2525 2456 821 204 10 75 chr3 163872872 163873073 -54164085 - MER69 DNA AcHobo -979 247 60 2327 167 92 33 chr3 163873874 163874365 -54162793 - MLT1F LTR MaLR 0 542 23 816 156 0 0 chr3 163874898 163875020 -54162138 + FLAM_C SINE Alu 3 124 -19 319 197 66 0 chr3 163875319 163875395 -54161763 + L2 LINE L2 3191 3271 -1 2348 93 3 0 chr3 163876035 163876345 -54160813 - AluSq SINE Alu -2 311 1 22 56 0 0 chr3 163876981 163877017 -54160141 + AT_rich Low_complexity Low_complexity 1 36 0 210 37 0 0 chr3 163879684 163879711 -54157447 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 390 275 123 29 chr3 163880253 163880424 -54156734 + MIR SINE MIR 76 262 0 21 0 0 0 chr3 163881543 163881564 -54155594 + AT_rich Low_complexity Low_complexity 1 21 0 2104 109 46 0 chr3 163882227 163882510 -54154648 - AluSx SINE Alu -15 297 2 405 170 37 33 chr3 163884070 163884188 -54152970 + MLT1A2 LTR MaLR 52 163 -211 1170 166 88 14 chr3 163884457 163884753 -54152405 - MER33 DNA MER1_type -5 319 2 223 275 78 56 chr3 163885674 163885816 -54151342 - L2 LINE L2 -10 3303 3159 1514 171 31 73 chr3 163885879 163886264 -54150894 - MLT1A2 LTR MaLR -5 369 1 278 273 101 48 chr3 163886482 163886709 -54150449 + L2 LINE L2 2259 2497 -817 459 276 245 0 chr3 163886773 163886969 -54150189 - MIR SINE MIR 0 262 19 335 369 57 19 chr3 163887002 163887352 -54149806 + L2 LINE L2 2633 2992 -321 1999 123 20 0 chr3 163887373 163887673 -54149485 - AluSq SINE Alu -7 306 1 232 380 93 7 chr3 163888026 163888176 -54148982 + L2 LINE L2 3102 3264 -8 21 36 0 0 chr3 163888239 163888267 -54148891 + AT_rich Low_complexity Low_complexity 1 28 0 630 316 73 32 chr3 163888304 163888620 -54148538 - MER115 DNA AcHobo 0 693 365 465 253 133 35 chr3 163888788 163889073 -54148085 + L1ME4a LINE L1 5805 6117 -4 219 36 0 0 chr3 163889864 163889892 -54147266 + (TG)n Simple_repeat Simple_repeat 1 28 0 2040 100 0 48 chr3 163889892 163890182 -54146976 - AluSx SINE Alu -33 279 4 520 305 48 82 chr3 163891032 163891569 -54145589 - L1M4 LINE L1 -1444 4702 4184 545 224 13 129 chr3 163891622 163891854 -54145304 - MER63A DNA MER1_type -5 205 1 1973 116 58 0 chr3 163891898 163892191 -54144967 + AluSx SINE Alu 1 310 -2 2500 146 62 0 chr3 163892370 163892809 -54144349 + L1MB7 LINE L1 5404 5869 -315 1340 136 20 12 chr3 163892810 163893060 -54144098 + L1MB7 LINE L1 5926 6177 -7 55 56 0 0 chr3 163893165 163893255 -54143903 + AT_rich Low_complexity Low_complexity 1 90 0 2092 139 10 0 chr3 163893260 163893562 -54143596 + AluSx SINE Alu 1 305 -7 226 320 103 26 chr3 163893609 163893765 -54143393 - L3b LINE CR1 -219 1364 1197 367 257 114 23 chr3 163893766 163893941 -54143217 + L2 LINE L2 3123 3313 0 774 164 15 0 chr3 163894810 163894944 -54142214 - BC200 scRNA scRNA -61 139 4 280 132 75 0 chr3 163895099 163895205 -54141953 + (TA)n Simple_repeat Simple_repeat 1 114 0 1890 157 13 0 chr3 163895268 163895568 -54141590 - AluSx SINE Alu -8 304 1 314 215 9 122 chr3 163895602 163895709 -54141449 - L1ME3 LINE L1 -107 6055 5961 1272 268 109 20 chr3 163895771 163896267 -54140891 - L1ME3 LINE L1 -214 5956 5417 3501 201 43 25 chr3 163897602 163898440 -54138718 - L1ME1 LINE L1 -20 6146 5325 1923 132 54 0 chr3 163898440 163898735 -54138423 - AluSx SINE Alu -1 311 1 189 0 0 0 chr3 163898740 163898761 -54138397 + (TTG)n Simple_repeat Simple_repeat 1 21 0 3501 201 43 25 chr3 163898761 163899063 -54138095 - L1ME1 LINE L1 -844 5322 4985 184 244 22 0 chr3 163899588 163899633 -54137525 - MIR3 SINE MIR -23 185 140 2536 121 23 5 chr3 163900840 163901230 -54135928 + L1MB7 LINE L1 5687 6083 -101 182 291 55 0 chr3 163901665 163901720 -54135438 + L2 LINE L2 3236 3293 -20 360 232 20 10 chr3 163902709 163902808 -54134350 - L1ME4a LINE L1 -66 6055 5956 183 186 0 0 chr3 163903183 163903226 -54133932 + T-rich Low_complexity Low_complexity 1 43 0 653 259 29 29 chr3 163903765 163903970 -54133188 + MIR SINE MIR 58 262 0 734 201 0 8 chr3 163904895 163905029 -54132129 + FLAM_A SINE Alu 1 133 0 24 0 0 0 chr3 163905900 163905924 -54131234 + AT_rich Low_complexity Low_complexity 1 24 0 403 269 106 62 chr3 163905961 163906121 -54131037 - MER91A DNA MER1_type -28 168 2 276 279 111 29 chr3 163906520 163906692 -54130466 + L1ME LINE L1 5616 5801 -320 229 275 55 0 chr3 163907056 163907147 -54130011 - L1ME4a LINE L1 -58 6063 5968 22 0 0 0 chr3 163907230 163907252 -54129906 + AT_rich Low_complexity Low_complexity 1 22 0 235 308 83 8 chr3 163907486 163907619 -54129539 - L1ME4a LINE L1 -503 5618 5476 571 258 40 0 chr3 163907751 163907902 -54129256 - MIR SINE MIR 0 262 106 188 256 0 12 chr3 163908199 163908281 -54128877 + (TATATG)n Simple_repeat Simple_repeat 3 83 0 1012 223 86 146 chr3 163908802 163909268 -54127890 - HAL1 LINE L1 -149 2358 1954 901 211 12 6 chr3 163909268 163909434 -54127724 - FAM SINE Alu -5 170 4 1012 223 86 146 chr3 163909434 163909734 -54127424 - HAL1 LINE L1 -553 1954 1638 186 341 83 15 chr3 163909768 163909900 -54127258 - L3 LINE CR1 -410 1167 1027 464 243 9 54 chr3 163910576 163910687 -54126471 - L2 LINE L2 0 3272 3167 249 200 67 27 chr3 163910724 163910799 -54126359 + MIR SINE MIR 91 168 -94 214 391 52 9 chr3 163910866 163910981 -54126177 + L2 LINE L2 3143 3262 -10 486 250 128 20 chr3 163911617 163911765 -54125393 - MIR3 SINE MIR -3 205 42 812 149 0 56 chr3 163912169 163912330 -54124828 + AluJo SINE Alu 16 167 -145 442 309 89 12 chr3 163912552 163912720 -54124438 + MIR SINE MIR 63 243 -19 215 288 108 18 chr3 163913437 163913548 -54123610 - MIR SINE MIR -64 198 78 2382 90 0 0 chr3 163915055 163915355 -54121803 + AluSp SINE Alu 1 300 -13 1444 252 151 19 chr3 163915487 163915999 -54121159 - L2 LINE L2 -3 3310 2728 496 296 80 24 chr3 163916044 163916501 -54120657 - LTR33 LTR ERVL -13 508 1 455 249 106 42 chr3 163916595 163916784 -54120374 - MIR3 SINE MIR 0 208 8 25 31 0 0 chr3 163917084 163917116 -54120042 + AT_rich Low_complexity Low_complexity 1 32 0 378 299 90 0 chr3 163917116 163917260 -54119898 - L1ME4a LINE L1 -14 6107 5951 24 85 0 0 chr3 163917276 163917335 -54119823 + AT_rich Low_complexity Low_complexity 1 59 0 1599 112 0 5 chr3 163917398 163917612 -54119546 + AluSg/x SINE Alu 66 278 -32 243 0 0 0 chr3 163917616 163917643 -54119515 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2255 101 0 3 chr3 163917872 163918169 -54118989 - AluSq SINE Alu -17 296 1 476 233 159 34 chr3 163919205 163919381 -54117777 + L2 LINE L2 2695 2892 -422 551 297 68 51 chr3 163919441 163919703 -54117455 + L2 LINE L2 3015 3284 -29 2079 129 0 0 chr3 163919703 163919982 -54117176 - AluSx SINE Alu -33 279 1 551 297 68 51 chr3 163919982 163920012 -54117146 + L2 LINE L2 3284 3312 -1 30 0 0 0 chr3 163923214 163923244 -54113914 + AT_rich Low_complexity Low_complexity 1 30 0 242 125 0 83 chr3 163923366 163923438 -54113720 + (CGG)n Simple_repeat Simple_repeat 1 66 0 339 278 122 85 chr3 163923565 163924026 -54113132 + L1M2 LINE L1 569 1046 -5803 449 282 102 124 chr3 163925195 163926089 -54111069 + L1M2 LINE L1 534 1407 -5442 26 0 0 0 chr3 163927379 163927405 -54109753 + AT_rich Low_complexity Low_complexity 1 26 0 1544 198 3 7 chr3 163930648 163930946 -54106212 + AluJo SINE Alu 1 297 -15 333 237 209 17 chr3 163932626 163932803 -54104355 + MIR SINE MIR 25 235 -27 258 313 12 0 chr3 163932995 163933075 -54104083 + MIR SINE MIR 36 116 -92 321 318 149 15 chr3 163933740 163933935 -54103223 - MIR SINE MIR -24 238 18 2227 104 0 3 chr3 163935436 163935734 -54101424 + AluSq SINE Alu 2 298 -15 839 214 155 5 chr3 163936561 163936767 -54100391 + MIR SINE MIR 4 240 -22 23 0 0 0 chr3 163938833 163938856 -54098302 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 163939714 163939735 -54097423 + AT_rich Low_complexity Low_complexity 1 21 0 2123 106 32 0 chr3 163939880 163940163 -54096995 + AluSq SINE Alu 3 294 -19 570 223 184 5 chr3 163941833 163942109 -54095049 - L1ME3A LINE L1 0 6164 5827 310 160 13 13 chr3 163942394 163942469 -54094689 + CT-rich Low_complexity Low_complexity 3 77 0 1378 175 22 22 chr3 163942476 163942744 -54094414 - L1MD3 LINE L1 -11 7984 7717 228 227 93 41 chr3 163943037 163943134 -54094024 + L3 LINE CR1 644 745 -832 185 308 19 0 chr3 163943278 163943330 -54093828 + L3 LINE CR1 936 988 -589 311 289 22 67 chr3 163944766 163944901 -54092257 - L2 LINE L2 -207 3065 2937 914 230 91 38 chr3 163945533 163945671 -54091487 - L1MC4 LINE L1 -2 8040 7911 1744 69 5 0 chr3 163945671 163945887 -54091271 + AluY SINE Alu 92 308 -3 914 230 91 38 chr3 163945887 163946129 -54091029 - L1MC4 LINE L1 -131 7911 7555 32 0 0 0 chr3 163946196 163946228 -54090930 + AT_rich Low_complexity Low_complexity 1 32 0 226 125 104 0 chr3 163947025 163947073 -54090085 + AluSc SINE Alu 234 286 -13 1902 152 24 3 chr3 163947141 163947438 -54089720 - AluSx SINE Alu -9 303 1 260 161 0 18 chr3 163947804 163947860 -54089298 + L1MCa LINE L1 2010 2064 -4362 2145 108 3 13 chr3 163947969 163948276 -54088882 - AluSx SINE Alu -8 304 1 2177 98 3 26 chr3 163950516 163950845 -54086313 + AluSg SINE Alu 1 310 0 712 292 11 11 chr3 163952978 163953163 -54083995 - MIR SINE MIR -27 235 51 213 156 22 0 chr3 163954031 163954076 -54083082 + (TA)n Simple_repeat Simple_repeat 1 46 0 220 356 20 0 chr3 163954360 163954461 -54082697 + L2 LINE L2 2014 2116 -1198 1807 155 22 0 chr3 163954472 163954750 -54082408 + AluJb SINE Alu 1 284 -28 203 333 189 37 chr3 163955104 163955347 -54081811 + L2 LINE L2 2937 3216 -56 1301 177 104 15 chr3 163955681 163955941 -54081217 + AluJo SINE Alu 6 288 -24 195 283 65 0 chr3 163955948 163955994 -54081164 - MIR SINE MIR -194 68 20 531 234 57 0 chr3 163956034 163956158 -54081000 - L3 LINE CR1 -4 1573 1443 738 91 0 0 chr3 163958212 163958355 -54078803 + AluSp/q SINE Alu 188 330 0 506 256 46 62 chr3 163958681 163958823 -54078335 - MIR SINE MIR -70 192 52 2275 94 0 0 chr3 163958823 163959109 -54078049 + AluSg SINE Alu 16 301 -9 506 256 46 62 chr3 163959109 163959161 -54077997 - MIR SINE MIR -210 52 1 815 160 8 0 chr3 163959362 163959493 -54077665 + FLAM_C SINE Alu 1 132 -11 181 356 122 26 chr3 163960278 163960508 -54076650 + L2 LINE L2 2100 2351 -963 1436 179 11 29 chr3 163961210 163961484 -54075674 + AluJo SINE Alu 22 290 -22 180 0 0 0 chr3 163961872 163961892 -54075266 + (TA)n Simple_repeat Simple_repeat 1 20 0 259 150 0 67 chr3 163962575 163962635 -54074523 - L1ME LINE L1 -302 5819 5764 345 246 55 18 chr3 163962641 163962751 -54074407 - L1ME LINE L1 -2085 5723 5610 259 205 12 24 chr3 163962802 163962885 -54074273 - L1P5 LINE L1 -702 5454 5373 24 0 0 0 chr3 163964218 163964242 -54072916 + AT_rich Low_complexity Low_complexity 1 24 0 326 237 280 0 chr3 163964799 163964917 -54072241 + MIR SINE MIR 46 196 -66 545 253 151 0 chr3 163965048 163965234 -54071924 - AluJo SINE Alu -13 299 86 2289 88 3 0 chr3 163965335 163965629 -54071529 + AluSp SINE Alu 1 295 -18 184 250 42 83 chr3 163965687 163965783 -54071375 - L2 LINE L2 -1878 1436 1345 780 161 19 122 chr3 163966659 163966864 -54070294 - MER5A DNA MER1_type 0 189 6 182 194 83 0 chr3 163966945 163966981 -54070177 - MIR SINE MIR -7 255 217 544 238 200 0 chr3 163967089 163967249 -54069909 - MIR SINE MIR -16 246 55 243 341 55 43 chr3 163967283 163967447 -54069711 - L2 LINE L2 -173 3099 2934 954 165 57 6 chr3 163967654 163967830 -54069328 + MER5A DNA MER1_type 1 185 -4 330 272 40 32 chr3 163968706 163968831 -54068327 - MIR3 SINE MIR -15 193 68 2290 89 10 10 chr3 163969347 163969660 -54067498 - AluSq SINE Alu 0 313 1 233 258 0 45 chr3 163970028 163970094 -54067064 - MIR3 SINE MIR -17 191 129 758 148 33 0 chr3 163970686 163970808 -54066350 + FLAM_C SINE Alu 1 126 -7 2021 125 7 0 chr3 163970815 163971094 -54066064 - AluSx SINE Alu -16 296 16 237 119 0 0 chr3 163972732 163972774 -54064384 + (T)n Simple_repeat Simple_repeat 1 42 0 180 0 0 0 chr3 163972999 163973019 -54064139 + (A)n Simple_repeat Simple_repeat 1 20 0 250 292 200 8 chr3 163975308 163975428 -54061730 - L2 LINE L2 -218 3054 2912 2436 73 10 16 chr3 163975797 163976111 -54061047 - AluSx SINE Alu 0 312 1 24 0 0 0 chr3 163977583 163977607 -54059551 + AT_rich Low_complexity Low_complexity 1 24 0 320 290 167 12 chr3 163978210 163978372 -54058786 + L1MC/D LINE L1 4816 5002 -1144 482 285 85 22 chr3 163978482 163978794 -54058364 + L1MC/D LINE L1 5379 5718 -452 923 238 28 6 chr3 163978794 163979060 -54058098 + Tigger7 DNA MER2_type 1 222 -483 505 189 32 0 chr3 163979063 163979158 -54058000 + Tigger7 DNA MER2_type 2394 2491 0 241 246 152 0 chr3 163979158 163979296 -54057862 + L1MC/D LINE L1 5715 5873 -1935 324 0 0 0 chr3 163979363 163979399 -54057759 + (CA)n Simple_repeat Simple_repeat 1 36 0 25 31 0 0 chr3 163979566 163979598 -54057560 + AT_rich Low_complexity Low_complexity 1 32 0 370 266 0 0 chr3 163979884 163979963 -54057195 + L2 LINE L2 1845 1923 -1391 261 149 21 0 chr3 163980109 163980156 -54057002 - LTR54 LTR ERV1 -61 449 402 829 172 0 0 chr3 163980159 163980281 -54056877 - FLAM_A SINE Alu -12 130 9 484 213 39 16 chr3 163980605 163980732 -54056426 - L1MC5 LINE L1 -54 7907 7778 2156 196 121 21 chr3 163980913 163981631 -54055527 - L1MC5 LINE L1 -178 7783 6994 2248 96 3 3 chr3 163982120 163982422 -54054736 - AluSp SINE Alu -11 302 1 256 342 13 13 chr3 163983353 163983429 -54053729 + L2 LINE L2 3145 3220 -52 6406 103 49 22 chr3 163983429 163983906 -54053252 - Tigger3b DNA MER2_type -1797 1231 768 2316 78 0 10 chr3 163983906 163984201 -54052957 - AluY SINE Alu -19 292 1 1753 163 37 7 chr3 163984201 163984495 -54052663 - AluJb SINE Alu -9 303 1 6406 103 49 22 chr3 163984495 163985147 -54052011 - Tigger3b DNA MER2_type -2259 769 1 320 333 48 0 chr3 163985186 163985333 -54051825 + MIR SINE MIR 100 253 -9 698 164 0 0 chr3 163985548 163985658 -54051500 - AluJb SINE Alu -6 306 197 348 261 41 72 chr3 163985671 163985866 -54051292 - MIR SINE MIR -66 196 8 2044 120 3 0 chr3 163986164 163986448 -54050710 + AluSx SINE Alu 1 285 -27 5436 117 12 30 chr3 163986868 163988289 -54048869 - L1PA16 LINE L1 -4 6162 4744 3176 198 11 6 chr3 163988292 163988995 -54048163 + L1 LINE L1 4003 4709 -1437 22 35 0 0 chr3 163989093 163989122 -54048036 + AT_rich Low_complexity Low_complexity 1 29 0 3084 138 21 35 chr3 163989179 163989979 -54047179 + pTR5 LTR ERV1 6 2025 -413 280 224 31 20 chr3 163989979 163990077 -54047081 + LTR30 LTR ERV1 544 642 -80 675 113 0 0 chr3 163990080 163990177 -54046981 + pTR5 LTR ERV1 303 399 -2039 1022 287 112 5 chr3 163990306 163990745 -54046413 + LTR33A LTR ERVL 38 523 0 446 259 99 12 chr3 163992115 163992277 -54044881 + MER69A DNA AcHobo 2 177 0 282 279 25 25 chr3 163992991 163993070 -54044088 + L2 LINE L2 3233 3311 -2 2012 89 0 66 chr3 163993995 163994297 -54042861 - AluY SINE Alu -13 298 17 2298 126 0 0 chr3 163995786 163996095 -54041063 + AluSx SINE Alu 1 309 -3 3342 139 79 59 chr3 163996105 163996868 -54040290 + L1MB7 LINE L1 5395 6172 -12 378 200 40 23 chr3 163996868 163997043 -54040115 + GA-rich Low_complexity Low_complexity 3 180 0 447 221 47 31 chr3 163997780 163997907 -54039251 - MIR SINE MIR -48 214 86 466 263 66 20 chr3 163997947 163998099 -54039059 - MIR SINE MIR 0 262 104 506 173 29 0 chr3 163998101 163998205 -54038953 + L1MA5 LINE L1 6189 6295 -5 292 238 100 25 chr3 163998332 163998412 -54038746 + MLT1J LTR MaLR 233 318 -193 615 268 124 44 chr3 163998571 163998982 -54038176 + MLT1J LTR MaLR 36 479 -32 384 258 56 0 chr3 163999089 163999178 -54037980 - MER102b DNA MER1_type -2 339 246 927 277 79 20 chr3 163999186 163999529 -54037629 + MLT1J2 LTR MaLR 15 377 -73 315 250 176 37 chr3 163999616 163999752 -54037406 - MER102b DNA MER1_type -154 187 33 233 138 19 46 chr3 164000403 164000474 -54036684 + T-rich Low_complexity Low_complexity 1 69 0 745 244 32 76 chr3 164000590 164000655 -54036503 + MIR SINE MIR 18 84 -178 2108 108 0 29 chr3 164000655 164000961 -54036197 - AluSx SINE Alu -15 297 1 745 244 32 76 chr3 164000961 164001039 -54036119 + MIR SINE MIR 84 164 -98 1039 173 123 60 chr3 164001039 164001404 -54035754 - MLT1B LTR MaLR 0 390 3 745 244 32 76 chr3 164001404 164001509 -54035649 + MIR SINE MIR 164 256 -6 24 53 0 0 chr3 164002879 164002917 -54034241 + AT_rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr3 164002969 164002994 -54034164 + AT_rich Low_complexity Low_complexity 1 25 0 2167 114 0 3 chr3 164003038 164003337 -54033821 - AluSg SINE Alu -12 298 1 1356 274 65 42 chr3 164004076 164004841 -54032317 + HAL1 LINE L1 1015 1797 -710 1360 66 0 16 chr3 164005269 164005452 -54031706 + L1PA5 LINE L1 5969 6148 -6 337 289 77 21 chr3 164005632 164005826 -54031332 - L1MC4a LINE L1 -1885 5992 5788 1927 179 0 3 chr3 164006106 164006414 -54030744 - AluJb SINE Alu 0 312 6 2243 93 24 0 chr3 164006629 164006918 -54030240 + AluSx SINE Alu 1 296 -16 423 158 69 0 chr3 164006954 164007055 -54030103 - L1ME1 LINE L1 -5 6161 6054 2083 195 68 36 chr3 164007060 164007644 -54029514 - L1MC4a LINE L1 -870 5345 4743 1615 211 107 4 chr3 164007705 164008204 -54028954 + MLT1E2 LTR MaLR 89 626 0 3862 212 104 24 chr3 164008205 164010109 -54027049 - L1MEc LINE L1 -2611 3604 1599 322 274 14 0 chr3 164010457 164010530 -54026628 - MADE1 DNA Mariner 0 80 7 23 0 0 0 chr3 164010767 164010790 -54026368 + AT_rich Low_complexity Low_complexity 1 23 0 1551 165 4 0 chr3 164012841 164013078 -54024080 + AluSx SINE Alu 3 240 -72 628 194 89 6 chr3 164063673 164063853 -53973305 + L1M4 LINE L1 3569 3763 -2383 1851 183 28 49 chr3 164063863 164063976 -53973182 + L1M4 LINE L1 3999 4113 -2033 1946 117 57 0 chr3 164063976 164064259 -53972899 - AluSx SINE Alu -13 299 1 1851 183 28 49 chr3 164064259 164064638 -53972520 + L1M4 LINE L1 4113 4481 -1665 1611 153 39 18 chr3 164064648 164064930 -53972228 + AluJo SINE Alu 1 288 -24 376 289 88 60 chr3 164064973 164065330 -53971828 + L1ME3 LINE L1 5569 5937 -225 26 0 0 0 chr3 164065567 164065593 -53971565 + AT_rich Low_complexity Low_complexity 1 26 0 856 185 13 0 chr3 164065674 164065825 -53971333 + FRAM SINE Alu 1 153 -13 207 0 0 0 chr3 164065838 164065861 -53971297 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1052 181 8 13 chr3 164065884 164066122 -53971036 + L1MD3 LINE L1 7741 7977 -18 1711 188 24 3 chr3 164066147 164066440 -53970718 - AluJo SINE Alu -13 299 1 270 334 53 2 chr3 164067029 164067153 -53970005 - MIR SINE MIR -72 136 42 429 270 204 13 chr3 164067155 164067307 -53969851 - MER5A DNA MER1_type 0 189 9 1824 163 7 7 chr3 164067347 164067653 -53969505 - AluJb SINE Alu -3 309 4 246 248 52 92 chr3 164068809 164068962 -53968196 - L2 LINE L2 -6 3307 3161 291 333 73 0 chr3 164069464 164069587 -53967571 + MIR3 SINE MIR 45 176 -32 762 157 0 54 chr3 164069867 164070014 -53967144 + FLAM_C SINE Alu 1 139 -4 2179 102 3 10 chr3 164070052 164070356 -53966802 - AluSq SINE Alu -11 302 1 473 324 34 91 chr3 164077588 164077940 -53959218 + L2 LINE L2 2922 3253 -19 735 165 0 0 chr3 164077975 164078084 -53959074 + Charlie3 DNA MER1_type 129 237 -2473 242 307 90 40 chr3 164078245 164078360 -53958798 - MIR SINE MIR -86 122 1 235 263 8 127 chr3 164078576 164078630 -53958528 - MLT1K LTR MaLR -111 477 443 2187 116 10 0 chr3 164078630 164078940 -53958218 - AluSq SINE Alu 0 313 1 235 263 8 127 chr3 164078940 164079003 -53958155 - MLT1K LTR MaLR -145 443 374 23 54 0 0 chr3 164079918 164079955 -53957203 + AT_rich Low_complexity Low_complexity 1 37 0 845 189 0 33 chr3 164079991 164080144 -53957014 + AluJo SINE Alu 5 152 -160 1410 179 38 0 chr3 164080145 164080380 -53956778 - AluJo SINE Alu -68 244 1 216 338 173 34 chr3 164080412 164080770 -53956388 + L2 LINE L2 2872 3279 -34 245 312 50 21 chr3 164081848 164081989 -53955169 - MIR SINE MIR -56 206 62 288 0 0 0 chr3 164082043 164082075 -53955083 + (TG)n Simple_repeat Simple_repeat 2 33 0 303 271 113 79 chr3 164082712 164082915 -53954243 + L1M2 LINE L1 734 943 -5906 2202 105 3 0 chr3 164083137 164083431 -53953727 - AluSx SINE Alu -17 295 1 408 263 120 0 chr3 164083538 164083671 -53953487 + MIR SINE MIR 52 200 -62 958 183 70 3 chr3 164084128 164084405 -53952753 - MSTD LTR MaLR -11 385 4 252 0 0 0 chr3 164084704 164084732 -53952426 + (T)n Simple_repeat Simple_repeat 1 28 0 217 222 0 0 chr3 164085568 164085604 -53951554 - MIR SINE MIR -131 77 42 24 0 0 0 chr3 164085880 164085904 -53951254 + AT_rich Low_complexity Low_complexity 1 24 0 6192 22 0 0 chr3 164085904 164086573 -53950585 - L1PA3 LINE L1 -1 6154 5486 9187 19 0 0 chr3 164086577 164088026 -53949132 + L1P1 LINE L1 4330 5778 -377 22 35 0 0 chr3 164088472 164088501 -53948657 + AT_rich Low_complexity Low_complexity 1 29 0 805 169 0 37 chr3 164088568 164088704 -53948454 - FLAM_C SINE Alu 0 133 3 1726 179 26 66 chr3 164088891 164089271 -53947887 + MLT1A1 LTR MaLR 1 365 0 482 275 38 0 chr3 164089273 164089404 -53947754 - MIR SINE MIR -87 175 40 270 289 27 81 chr3 164089442 164089591 -53947567 + MIR3 SINE MIR 2 142 -66 839 235 39 24 chr3 164090521 164090776 -53946382 - L1ME2 LINE L1 -217 5947 5689 1556 132 53 49 chr3 164090801 164091167 -53945991 + MSTA LTR MaLR 1 375 0 258 310 44 44 chr3 164091172 164091330 -53945828 - L1ME2 LINE L1 -511 5659 5502 455 293 153 27 chr3 164091436 164091708 -53945450 + L2 LINE L2 2767 3072 -241 188 173 211 0 chr3 164091779 164091831 -53945327 + L2 LINE L2 3251 3313 0 228 328 152 45 chr3 164092472 164092670 -53944488 + L2 LINE L2 3053 3271 -1 5664 160 29 46 chr3 164094103 164094366 -53942792 + L1MA9 LINE L1 4620 4886 -1426 2523 34 3 3 chr3 164094366 164094664 -53942494 + AluY SINE Alu 1 298 -13 2000 149 0 3 chr3 164094674 164094969 -53942189 + AluSx SINE Alu 1 294 -18 5664 160 29 46 chr3 164094969 164096403 -53940755 + L1MA9 LINE L1 4895 6307 -5 780 175 21 14 chr3 164096430 164096573 -53940585 - AluJb SINE Alu -165 147 4 182 136 45 45 chr3 164096573 164096617 -53940541 + MER5B DNA MER1_type 74 117 -61 396 0 0 0 chr3 164096618 164096662 -53940496 + (TG)n Simple_repeat Simple_repeat 2 45 0 674 254 39 36 chr3 164096704 164096983 -53940175 - L1MC5 LINE L1 -34 7927 7648 343 197 15 0 chr3 164097011 164097077 -53940081 - MER5B DNA MER1_type -110 68 2 274 335 79 24 chr3 164097090 164097190 -53939968 - MER5A DNA MER1_type -3 186 72 2527 61 0 10 chr3 164097190 164097503 -53939655 - AluY SINE Alu -1 310 1 274 335 79 24 chr3 164097503 164097566 -53939592 - MER5A DNA MER1_type -117 72 14 209 32 0 32 chr3 164098053 164098084 -53939074 + (TG)n Simple_repeat Simple_repeat 2 31 0 307 250 95 0 chr3 164098468 164098552 -53938606 + Charlie2 DNA MER1_type 1856 1947 -915 2165 218 75 14 chr3 164098560 164099137 -53938021 + Charlie2 DNA MER1_type 2251 2862 0 22 35 0 0 chr3 164099450 164099479 -53937679 + AT_rich Low_complexity Low_complexity 1 29 0 320 254 8 41 chr3 164099547 164099669 -53937489 - AluSq/x SINE Alu -169 133 16 1614 150 109 0 chr3 164100957 164101231 -53935927 + AluJb SINE Alu 3 306 -6 551 296 99 0 chr3 164101382 164101534 -53935624 - MER5A DNA MER1_type -1 188 22 2036 137 11 72 chr3 164101541 164101900 -53935258 + MER1B DNA MER1_type 1 337 0 233 136 51 51 chr3 164102424 164102483 -53934675 - MLT1K LTR MaLR -63 525 467 227 297 0 34 chr3 164103347 164103465 -53933693 + GA-rich Low_complexity Low_complexity 2 115 0 757 187 37 37 chr3 164103537 164103724 -53933434 - L1 LINE L1 -1484 4662 4476 1329 89 0 0 chr3 164103729 164103897 -53933261 - AluSg/x SINE Alu -11 298 131 467 105 126 0 chr3 164103900 164103995 -53933163 - L1 LINE L1 -1659 4487 4381 788 188 26 5 chr3 164103996 164104188 -53932970 + L1M4 LINE L1 2860 3055 -3091 * 6056 239 94 14 chr3 164104178 164104497 -53932661 - L1 LINE L1 -1416 4730 4438 420 20 0 0 chr3 164104497 164104546 -53932612 + (TG)n Simple_repeat Simple_repeat 2 50 0 6056 239 94 14 chr3 164104546 164104915 -53932243 - L1 LINE L1 -1708 4438 4100 1563 181 15 4 chr3 164104915 164105186 -53931972 - AluSx SINE Alu -38 274 1 6056 239 94 14 chr3 164105186 164106413 -53930745 - L1 LINE L1 -2046 4100 2660 2085 118 3 34 chr3 164106416 164106737 -53930421 - AluJb SINE Alu -1 311 1 429 232 125 26 chr3 164107374 164107646 -53929512 - AluJb SINE Alu 0 302 4 791 195 0 0 chr3 164107685 164107813 -53929345 + FLAM_C SINE Alu 5 132 -1 1359 211 22 124 chr3 164107820 164108313 -53928845 + L1MB7 LINE L1 5726 6168 -16 2076 126 0 0 chr3 164108321 164108614 -53928544 + AluY SINE Alu 1 293 -18 678 200 73 0 chr3 164108626 164108736 -53928422 + FLAM_C SINE Alu 1 118 -15 784 252 101 10 chr3 164108744 164109160 -53927998 - L1MEc LINE L1 -5070 1326 873 180 0 0 0 chr3 164109160 164109180 -53927978 + (TTAAA)n Simple_repeat Simple_repeat 1 20 0 763 104 19 0 chr3 164109194 164109300 -53927858 - AluJb SINE Alu -194 118 11 363 267 62 11 chr3 164109308 164109484 -53927674 - L1MEc LINE L1 -5506 890 706 756 162 22 52 chr3 164109546 164109682 -53927476 + FLAM_C SINE Alu 1 132 -1 25 51 0 0 chr3 164109682 164109721 -53927437 + AT_rich Low_complexity Low_complexity 1 39 0 1379 185 70 35 chr3 164109789 164110103 -53927055 - MER21B LTR ERV1 -127 736 412 244 329 148 13 chr3 164110136 164110291 -53926867 - L1MEc LINE L1 -5993 403 228 751 176 34 0 chr3 164110294 164110413 -53926745 + FLAM_C SINE Alu 2 124 -19 848 152 0 60 chr3 164110415 164110442 -53926716 + MLT1B LTR MaLR 249 276 -114 1876 143 6 32 chr3 164110442 164110757 -53926401 + AluJo SINE Alu 1 307 -5 848 152 0 60 chr3 164110757 164110880 -53926278 + MLT1B LTR MaLR 276 390 0 473 258 16 0 chr3 164110919 164111043 -53926115 - L1MEc LINE L1 -6214 182 57 2384 92 0 7 chr3 164111383 164111689 -53925469 + AluSp SINE Alu 1 304 -9 27 49 0 0 chr3 164112104 164112145 -53925013 + AT_rich Low_complexity Low_complexity 1 41 0 249 324 83 9 chr3 164112612 164112720 -53924438 + L2 LINE L2 3141 3256 -16 2566 54 0 0 chr3 164113824 164114121 -53923037 - AluY SINE Alu -14 297 1 2349 68 24 3 chr3 164114621 164114917 -53922241 - AluSx SINE Alu -10 302 1 236 252 144 0 chr3 164115375 164115477 -53921681 + MIR3 SINE MIR 45 160 -48 30 0 0 0 chr3 164115567 164115597 -53921561 + AT_rich Low_complexity Low_complexity 1 30 0 5282 62 1 0 chr3 164115923 164116724 -53920434 + L1P1 LINE L1 4687 5488 -667 1301 137 0 16 chr3 164116787 164116970 -53920188 - AluJb SINE Alu -132 180 1 1256 174 5 0 chr3 164117350 164117545 -53919613 + AluJo SINE Alu 6 201 -111 219 36 0 0 chr3 164117862 164117890 -53919268 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1735 87 7 87 chr3 164117895 164118170 -53918988 - AluSx SINE Alu -37 275 23 19113 60 6 0 chr3 164118639 164121125 -53916033 + L1P LINE L1 1152 3652 -2494 2091 113 7 3 chr3 164122203 164122494 -53914664 - AluSx SINE Alu -18 294 3 3128 151 6 68 chr3 164122497 164123164 -53913994 - L1PB2 LINE L1 -118 6033 5408 24 32 0 0 chr3 164123517 164123548 -53913610 + AT_rich Low_complexity Low_complexity 1 31 0 224 270 215 19 chr3 164123779 164123911 -53913247 - MIR SINE MIR -65 143 13 27 29 0 0 chr3 164124791 164124825 -53912333 + AT_rich Low_complexity Low_complexity 1 34 0 1527 84 4 27 chr3 164124825 164125050 -53912108 + AluSq SINE Alu 1 220 -93 374 171 0 14 chr3 164125686 164125756 -53911402 + MER5B DNA MER1_type 2 70 -108 327 261 60 42 chr3 164125760 164126044 -53911114 + L1MC5 LINE L1 7625 7913 -48 807 332 91 68 chr3 164126173 164126723 -53910435 + L3 LINE CR1 327 898 -679 1911 126 27 0 chr3 164126723 164127016 -53910142 - AluSx SINE Alu -6 306 6 807 332 91 68 chr3 164127016 164127157 -53910001 + L3 LINE CR1 898 1034 -543 28 29 0 0 chr3 164127991 164128026 -53909132 + AT_rich Low_complexity Low_complexity 1 35 0 732 184 0 34 chr3 164128673 164128820 -53908338 - FLAM_C SINE Alu -1 142 1 2070 115 34 14 chr3 164128821 164129117 -53908041 - AluSx SINE Alu -10 302 1 186 43 0 0 chr3 164130373 164130396 -53906762 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2304 102 0 3 chr3 164130828 164131132 -53906026 - AluSx SINE Alu -9 303 1 1679 208 102 72 chr3 164131716 164132583 -53904575 - L1MC5 LINE L1 -107 7854 6962 1235 146 50 0 chr3 164132588 164132787 -53904371 - AluJo SINE Alu -18 294 86 2430 84 3 0 chr3 164132800 164133109 -53904049 - AluSp SINE Alu -3 310 1 410 232 196 42 chr3 164133163 164133331 -53903827 - L1MC5 LINE L1 -1041 6920 6727 21 36 0 0 chr3 164133553 164133581 -53903577 + AT_rich Low_complexity Low_complexity 1 28 0 230 239 0 0 chr3 164134391 164134437 -53902721 - MIR SINE MIR -4 258 213 288 247 62 31 chr3 164134478 164134575 -53902583 - MIR SINE MIR -162 100 1 1993 145 0 10 chr3 164135646 164135935 -53901223 + AluJo SINE Alu 1 286 -26 344 319 52 65 chr3 164136078 164136307 -53900851 + L1ME LINE L1 4054 4279 -1867 276 277 104 51 chr3 164136545 164136578 -53900580 + L1ME LINE L1 4710 4740 -1406 1953 129 0 0 chr3 164136578 164136841 -53900317 + AluSc SINE Alu 30 292 -17 276 277 104 51 chr3 164136841 164137222 -53899936 + L1ME LINE L1 4740 5146 -1000 615 294 6 0 chr3 164137437 164137600 -53899558 + FRAM SINE Alu 1 164 -2 321 307 95 37 chr3 164137603 164137792 -53899366 + L1ME LINE L1 5338 5537 -584 2137 113 3 13 chr3 164137797 164138098 -53899060 + AluSq SINE Alu 1 298 -15 2230 110 0 0 chr3 164138165 164138456 -53898702 - AluSx SINE Alu -21 291 1 737 229 0 0 chr3 164138480 164138620 -53898538 + FRAM SINE Alu 4 143 -33 226 61 30 0 chr3 164138625 164138658 -53898500 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 3689 96 6 2 chr3 164139694 164140244 -53896914 + HERVH LTR ERV1 4283 4834 -2879 3543 103 5 19 chr3 164140251 164140816 -53896342 + HERVH LTR ERV1 7157 7713 0 1101 184 103 70 chr3 164140816 164141245 -53895913 + LTR7 LTR ERV1 1 443 -7 836 178 34 0 chr3 164141318 164141464 -53895694 + FRAM SINE Alu 1 150 -26 398 205 8 33 chr3 164141467 164141589 -53895569 + L1MC5 LINE L1 7731 7849 -112 21 0 0 0 chr3 164143425 164143446 -53893712 + AT_rich Low_complexity Low_complexity 1 21 0 2536 40 3 3 chr3 164143547 164143847 -53893311 + AluSp SINE Alu 1 300 -13 2274 100 0 3 chr3 164144876 164145176 -53891982 + AluSx SINE Alu 1 299 -13 2180 108 3 0 chr3 164145567 164145855 -53891303 - AluSx SINE Alu -23 289 1 31 58 0 0 chr3 164146140 164146192 -53890966 + AT_rich Low_complexity Low_complexity 1 52 0 1256 189 0 13 chr3 164146232 164146470 -53890688 + AluSx SINE Alu 1 235 -77 201 235 12 49 chr3 164147457 164147538 -53889620 + T-rich Low_complexity Low_complexity 1 78 0 1999 113 31 28 chr3 164148111 164148402 -53888756 + AluSx SINE Alu 1 292 -20 1621 185 47 7 chr3 164148464 164148762 -53888396 + AluJb SINE Alu 1 310 -2 1504 201 105 9 chr3 164149292 164149625 -53887533 - MLT1A1 LTR MaLR 0 365 1 954 234 23 9 chr3 164149646 164149860 -53887298 - AluJo SINE Alu -11 301 85 815 165 0 0 chr3 164149898 164150025 -53887133 - FLAM_C SINE Alu -6 127 1 81 85 0 0 chr3 164150549 164150749 -53886409 + AT_rich Low_complexity Low_complexity 1 200 0 22 0 0 0 chr3 164151458 164151480 -53885678 + AT_rich Low_complexity Low_complexity 1 22 0 2103 104 50 20 chr3 164151732 164152030 -53885128 + AluSq SINE Alu 1 307 -6 251 266 57 57 chr3 164152444 164152568 -53884590 - L2 LINE L2 -209 3063 2940 813 148 297 0 chr3 164152568 164152809 -53884349 - Tigger7 DNA MER2_type -1 2486 2274 2626 153 79 4 chr3 164152816 164153320 -53883838 - Tigger7 DNA MER2_type -172 561 20 21 36 0 0 chr3 164153887 164153915 -53883243 + AT_rich Low_complexity Low_complexity 1 28 0 2206 94 17 0 chr3 164154312 164154600 -53882558 - AluSx SINE Alu -19 293 1 2457 72 0 0 chr3 164154626 164154918 -53882240 - AluY SINE Alu -19 292 1 436 269 180 0 chr3 164156601 164156768 -53880390 - MIR SINE MIR -61 201 5 494 310 112 12 chr3 164156823 164157149 -53880009 - L1MC/D LINE L1 -747 5399 5239 527 193 219 0 chr3 164157382 164157501 -53879657 - FRAM SINE Alu -32 144 1 2043 130 10 3 chr3 164157545 164157845 -53879313 + AluSq SINE Alu 1 302 -11 242 65 0 0 chr3 164157907 164157938 -53879220 + MLT2B1 LTR ERVL 490 520 0 1482 218 33 22 chr3 164158002 164158364 -53878794 + MLT1A2 LTR MaLR 5 370 -4 2674 39 0 0 chr3 164158401 164158708 -53878450 + AluY SINE Alu 1 307 -4 601 207 0 0 chr3 164158891 164159002 -53878156 - FLAM_C SINE Alu -32 111 1 965 211 53 4 chr3 164159002 164159248 -53877910 + MER58B DNA MER1_type 83 340 -1 821 207 0 0 chr3 164159390 164159540 -53877618 + AluJb SINE Alu 149 298 -14 1787 130 11 11 chr3 164159748 164160033 -53877125 - AluSx SINE Alu -27 285 1 5766 123 118 28 chr3 164160876 164161488 -53875670 + Tigger3b DNA MER2_type 1 556 -2472 1816 170 0 0 chr3 164161488 164161771 -53875387 - AluJb SINE Alu -12 300 18 5766 123 118 28 chr3 164161771 164162287 -53874871 + Tigger3b DNA MER2_type 556 1231 0 1685 158 71 0 chr3 164162697 164162963 -53874195 - AluJb SINE Alu -26 286 2 354 247 47 0 chr3 164162980 164163065 -53874093 + L1MC4 LINE L1 6615 6703 -1339 * 360 314 10 0 chr3 164162990 164163092 -53874066 - L1MC4 LINE L1 -1340 6702 6600 5313 127 61 47 chr3 164163604 164164750 -53872408 + L1MC1 LINE L1 5186 6333 0 24 0 0 0 chr3 164164750 164164774 -53872384 + AT_rich Low_complexity Low_complexity 1 24 0 245 258 0 34 chr3 164165090 164165179 -53871979 + GA-rich Low_complexity Low_complexity 1 86 0 1554 152 3 121 chr3 164165698 164165881 -53871277 - AluJb SINE Alu -10 292 164 1708 168 11 11 chr3 164165881 164166167 -53870991 + AluSx SINE Alu 3 288 -24 1554 152 3 121 chr3 164166167 164166313 -53870845 - AluJb SINE Alu -138 164 2 891 170 113 0 chr3 164166473 164166632 -53870526 - MER45A DNA AcHobo -1 177 1 29 0 0 0 chr3 164166819 164166848 -53870310 + AT_rich Low_complexity Low_complexity 1 29 0 1970 142 0 3 chr3 164166856 164167165 -53869993 - AluJb SINE Alu 0 308 1 1016 179 0 0 chr3 164167175 164167337 -53869821 - AluJb SINE Alu -22 290 129 1627 104 0 5 chr3 164167688 164167900 -53869258 - AluSg/x SINE Alu -18 292 82 775 249 60 21 chr3 164167939 164168272 -53868886 - L1ME LINE L1 -299 5822 5477 623 228 85 82 chr3 164168407 164168785 -53868373 - MER68 LTR ERV1 0 562 184 2242 135 0 0 chr3 164169181 164169493 -53867665 + AluSx SINE Alu 1 312 0 241 214 54 18 chr3 164169847 164169903 -53867255 - MLT1K LTR MaLR -505 83 26 197 33 33 0 chr3 164169923 164169953 -53867205 + (TTA)n Simple_repeat Simple_repeat 3 33 0 326 78 0 0 chr3 164170041 164170092 -53867066 - Alu SINE Alu -249 51 1 724 161 25 0 chr3 164170092 164170210 -53866948 + MER41E LTR ERV1 392 512 0 331 272 10 0 chr3 164170386 164170489 -53866669 + L1MC5 LINE L1 7289 7392 -569 1710 149 62 7 chr3 164170491 164170780 -53866378 + AluJb SINE Alu 1 305 -7 274 267 30 0 chr3 164170934 164171035 -53866123 + MER90 LTR ERV1 170 273 -302 538 138 181 81 chr3 164171039 164171088 -53866070 + LTR23 LTR ERV1 1 44 -393 2170 85 34 3 chr3 164171088 164171383 -53865775 - AluY SINE Alu -6 305 2 538 138 181 81 chr3 164171383 164171493 -53865665 + LTR23 LTR ERV1 44 176 -261 1382 162 0 0 chr3 164171494 164171704 -53865454 - AluJb SINE Alu -22 290 81 3457 154 25 40 chr3 164171746 164172389 -53864769 - MER41B LTR ERV1 -2 633 1 473 179 6 109 chr3 164172420 164172500 -53864658 + MER90 LTR ERV1 461 519 -95 1459 177 159 14 chr3 164172500 164172845 -53864313 - MSTD LTR MaLR -1 395 1 473 179 6 109 chr3 164172845 164172920 -53864238 + MER90 LTR ERV1 519 600 -14 365 225 75 38 chr3 164172923 164173083 -53864075 + L1MC5 LINE L1 7515 7680 -281 314 213 35 59 chr3 164173568 164173737 -53863421 + G-rich Low_complexity Low_complexity 5 169 0 398 273 36 36 chr3 164173848 164173958 -53863200 + L2 LINE L2 3162 3271 -1 278 276 10 71 chr3 164173965 164174063 -53863095 + MIR3 SINE MIR 77 168 -40 437 225 0 0 chr3 164174299 164174410 -53862748 + L1MC4 LINE L1 7925 8035 -7 201 74 0 0 chr3 164174996 164175023 -53862135 + (T)n Simple_repeat Simple_repeat 1 27 0 35 54 0 0 chr3 164177141 164177197 -53859961 + AT_rich Low_complexity Low_complexity 1 56 0 21 36 0 0 chr3 164178443 164178471 -53858687 + AT_rich Low_complexity Low_complexity 1 28 0 492 287 178 61 chr3 164178487 164178943 -53858215 + L2 LINE L2 2093 2601 -713 488 181 121 0 chr3 164178984 164179100 -53858058 + MER58 DNA MER1_type 56 185 -2235 * 554 203 30 8 chr3 164179096 164179229 -53857929 + MER58 DNA MER1_type 2270 2405 -15 2363 66 0 20 chr3 164179257 164179561 -53857597 - AluY SINE Alu -13 298 1 217 330 107 46 chr3 164179638 164179694 -53857464 + L2 LINE L2 2763 2814 -500 783 250 72 5 chr3 164179694 164179902 -53857256 + MER58A DNA MER1_type 1 222 -2 217 330 107 46 chr3 164179902 164180042 -53857116 + L2 LINE L2 2814 2971 -343 30 0 0 0 chr3 164182048 164182078 -53855080 + AT_rich Low_complexity Low_complexity 1 30 0 1056 107 51 17 chr3 164182267 164182444 -53854714 - MER46A DNA MER2_type 0 236 54 2931 227 64 12 chr3 164183279 164184565 -53852593 + L1 LINE L1 2164 3571 -2575 217 304 43 0 chr3 164184573 164184688 -53852470 - L2 LINE L2 -3 3269 3150 4488 62 16 11 chr3 164184774 164185406 -53851752 + SVA Other Other 1 635 -751 6575 82 136 11 chr3 164186416 164187520 -53849638 + L1P LINE L1 2 1243 -4903 180 0 0 0 chr3 164188019 164188039 -53849119 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 731 207 55 0 chr3 164188562 164188707 -53848451 - AluJb SINE Alu 0 312 160 309 285 268 6 chr3 164188927 164189106 -53848052 - L2 LINE L2 -167 3146 2921 416 327 64 30 chr3 164189196 164189493 -53847665 - L2 LINE L2 -606 2708 2402 763 135 0 40 chr3 164189840 164189966 -53847192 + FLAM_A SINE Alu 11 131 -11 1073 171 15 0 chr3 164190328 164190533 -53846625 - L1 LINE L1 -1984 4162 3955 1819 165 14 3 chr3 164190694 164190991 -53846167 - AluJb SINE Alu -12 300 1 2419 213 92 9 chr3 164191567 164192134 -53845024 - MER90 LTR ERV1 0 614 1 23 33 0 0 chr3 164192198 164192228 -53844930 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr3 164192288 164192314 -53844844 + AT_rich Low_complexity Low_complexity 1 26 0 258 301 24 12 chr3 164192798 164192881 -53844277 - MIR SINE MIR -105 103 20 691 102 76 0 chr3 164193155 164193273 -53843885 + L1PA13 LINE L1 6026 6152 -11 30 59 0 0 chr3 164193689 164193740 -53843418 + AT_rich Low_complexity Low_complexity 1 51 0 366 23 0 0 chr3 164194121 164194164 -53842994 + (CA)n Simple_repeat Simple_repeat 2 44 0 258 279 0 51 chr3 164194174 164194253 -53842905 + MIR SINE MIR 114 188 -74 264 231 0 46 chr3 164194436 164194501 -53842657 + MIR3 SINE MIR 136 197 -11 663 227 8 0 chr3 164195382 164195514 -53841644 + FLAM_A SINE Alu 1 133 0 2808 173 60 34 chr3 164196224 164197096 -53840062 + L1M4 LINE L1 4924 5821 -357 778 188 17 0 chr3 164197110 164197291 -53839867 + L1PBa LINE L1 1 184 -6679 612 95 38 0 chr3 164197323 164197428 -53839730 + L1PBa LINE L1 1137 1245 -5618 1581 30 0 15 chr3 164197533 164197735 -53839423 - L1PA6 LINE L1 -296 5858 5660 241 351 58 44 chr3 164197788 164197993 -53839165 - L2 LINE L2 -540 2774 2567 185 296 86 12 chr3 164198423 164198504 -53838654 - L2 LINE L2 -17 3296 3210 239 285 44 0 chr3 164199060 164199218 -53837940 - L1M4 LINE L1 -1711 4435 4271 195 235 0 0 chr3 164199377 164199428 -53837730 + (CATA)n Simple_repeat Simple_repeat 3 53 0 885 198 151 10 chr3 164199454 164199646 -53837512 - MER20 DNA MER1_type 0 219 1 475 224 51 6 chr3 164199657 164199813 -53837345 - L1M4 LINE L1 -2154 3992 3830 216 67 0 0 chr3 164201314 164201344 -53835814 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 5899 94 17 2 chr3 164201344 164202772 -53834386 - L1PA5 LINE L1 -24 6130 4685 4294 115 12 11 chr3 164202879 164203638 -53833520 + L1MA5A LINE L1 5195 5956 -341 591 94 94 0 chr3 164204104 164204210 -53832948 + L1MA5A LINE L1 5936 6051 -246 1888 88 4 4 chr3 164204211 164204473 -53832685 + L1PB1 LINE L1 5885 6146 -5 8861 103 9 21 chr3 164204656 164206166 -53830992 - L1P3 LINE L1 -4483 1978 474 208 246 18 18 chr3 164208668 164208725 -53828433 + L2 LINE L2 3216 3272 0 399 383 109 27 chr3 164208786 164209225 -53827933 + L2 LINE L2 2397 2871 -443 203 125 25 0 chr3 164209249 164209289 -53827869 + (TA)n Simple_repeat Simple_repeat 2 42 0 6089 127 19 132 chr3 164209795 164210710 -53826448 + L1P4 LINE L1 3016 3874 -2272 1140 134 139 0 chr3 164210710 164210897 -53826261 + AluSg1 SINE Alu 1 213 -96 6089 127 19 132 chr3 164210897 164211426 -53825732 + L1P4 LINE L1 3874 4461 -1685 2416 81 33 0 chr3 164212334 164212693 -53824465 + L1P4 LINE L1 5357 5727 -434 318 323 40 40 chr3 164213488 164213612 -53823546 + L2 LINE L2 3149 3272 0 9378 27 6 7 chr3 164214036 164215367 -53821791 + L1P2 LINE L1 4187 5512 -643 186 133 0 0 chr3 164216707 164216737 -53820421 + (TATATG)n Simple_repeat Simple_repeat 5 34 0 2064 134 24 24 chr3 164216810 164217183 -53819975 + THE1C LTR MaLR 1 373 -2 3919 144 81 67 chr3 164217185 164218069 -53819089 + THE1C-int LTR MaLR 1 897 -683 188 322 33 11 chr3 164218198 164218288 -53818870 - L2 LINE L2 -286 2986 2895 220 354 108 13 chr3 164218450 164218608 -53818550 - L2 LINE L2 -568 2746 2574 610 111 0 0 chr3 164218986 164219067 -53818091 + AluJ/FLAM SINE Alu 5 85 -227 2072 118 14 10 chr3 164219287 164219575 -53817583 + AluSx SINE Alu 5 293 -19 2253 108 0 19 chr3 164220393 164220709 -53816449 + AluSg SINE Alu 1 310 0 603 175 6 38 chr3 164220725 164220885 -53816273 + L1P LINE L1 5028 5182 -964 6827 67 6 8 chr3 164221298 164222401 -53814757 - L1PA5 LINE L1 -1 6153 5050 732 192 77 32 chr3 164224039 164224195 -53812963 - AluJo SINE Alu -149 163 1 22 56 0 0 chr3 164225288 164225324 -53811834 + AT_rich Low_complexity Low_complexity 1 36 0 1837 165 24 24 chr3 164226614 164226948 -53810210 - MER1B DNA MER1_type 0 337 4 857 266 132 14 chr3 164228670 164229035 -53808123 - Charlie7 DNA MER1_type -1887 725 318 2041 73 16 25 chr3 164229291 164229661 -53807497 + LTR7 LTR ERV1 2 412 -38 228 130 0 0 chr3 164229661 164229707 -53807451 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 1901 96 18 14 chr3 164230787 164231067 -53806091 + AluSc SINE Alu 1 281 -28 429 20 0 0 chr3 164231067 164231117 -53806041 + (TA)n Simple_repeat Simple_repeat 2 51 0 550 269 134 5 chr3 164231201 164231387 -53805771 - L2 LINE L2 -1 3312 3103 4395 136 10 35 chr3 164233041 164233950 -53803208 + L1P LINE L1 3591 4476 -1670 969 105 0 0 chr3 164234399 164234523 -53802635 + AluSq/x SINE Alu 1 124 -188 1713 139 114 4 chr3 164235419 164235699 -53801459 - AluJb SINE Alu -1 311 1 300 53 0 0 chr3 164236070 164236108 -53801050 + (CA)n Simple_repeat Simple_repeat 1 38 0 2001 156 0 0 chr3 164236158 164236453 -53800705 + AluSx SINE Alu 1 295 -17 22 70 0 0 chr3 164236565 164236608 -53800550 + AT_rich Low_complexity Low_complexity 1 43 0 530 247 20 13 chr3 164236617 164236767 -53800391 - MER4C LTR ERV1 0 465 315 445 170 260 0 chr3 164236767 164236867 -53800291 - FLAM_C SINE Alu -14 129 4 233 294 0 15 chr3 164236887 164236955 -53800203 + GA-rich Low_complexity Low_complexity 3 69 0 1626 161 38 24 chr3 164236958 164237411 -53799747 - MER4A LTR ERV1 -248 416 1 21 0 0 0 chr3 164237822 164237843 -53799315 + AT_rich Low_complexity Low_complexity 1 21 0 526 162 19 19 chr3 164238307 164238412 -53798746 + FRAM SINE Alu 44 148 -28 294 29 0 0 chr3 164238412 164238447 -53798711 + (TAA)n Simple_repeat Simple_repeat 2 36 0 751 122 16 41 chr3 164238473 164238563 -53798595 + AluJo SINE Alu 11 99 -213 2977 150 34 80 chr3 164238563 164239093 -53798065 + LTR9 LTR ERV1 1 499 -113 2393 96 0 0 chr3 164239093 164239395 -53797763 - AluSg SINE Alu -8 302 1 2977 150 34 80 chr3 164239395 164239505 -53797653 + LTR9 LTR ERV1 499 612 0 751 122 16 41 chr3 164239505 164239537 -53797621 + AluJo SINE Alu 99 130 -182 1799 177 34 43 chr3 164239632 164240186 -53796972 - MLT2A2 LTR ERVL 0 554 1 1167 152 0 0 chr3 164242112 164242283 -53794875 + AluJo SINE Alu 134 304 -8 406 348 41 14 chr3 164242288 164242509 -53794649 + L1ME4a LINE L1 2184 2410 -3736 227 337 0 0 chr3 164242666 164242755 -53794403 + L1ME4a LINE L1 2458 2546 -3600 408 314 160 23 chr3 164242833 164243139 -53794019 + L1ME4a LINE L1 2651 2998 -3148 2825 250 76 53 chr3 164243151 164243838 -53793320 - L2 LINE L2 -223 3090 2357 1548 172 3 75 chr3 164243838 164244158 -53793000 - AluJb SINE Alu -15 297 1 2825 250 76 53 chr3 164244158 164244574 -53792584 - L2 LINE L2 -956 2357 1952 24 32 0 0 chr3 164244574 164244605 -53792553 + AT_rich Low_complexity Low_complexity 1 31 0 2154 103 10 0 chr3 164244747 164245038 -53792120 + AluSx SINE Alu 1 294 -18 21 36 0 0 chr3 164245193 164245221 -53791937 + AT_rich Low_complexity Low_complexity 1 28 0 228 254 0 45 chr3 164245355 164245422 -53791736 + GA-rich Low_complexity Low_complexity 2 65 0 1224 77 13 0 chr3 164245758 164245913 -53791245 + AluSc SINE Alu 141 297 -12 2300 102 0 3 chr3 164245924 164246228 -53790930 + AluSx SINE Alu 1 303 -9 534 277 185 15 chr3 164246357 164246552 -53790606 - MIR SINE MIR -33 229 2 242 351 59 63 chr3 164246556 164246778 -53790380 - L2 LINE L2 -21 3251 3031 200 262 78 58 chr3 164246744 164246847 -53790311 - MIR SINE MIR -87 121 17 * 216 222 63 16 chr3 164246887 164246950 -53790208 + L2 LINE L2 3199 3264 -8 238 245 295 43 chr3 164247569 164247708 -53789450 + L3 LINE CR1 1063 1236 -341 196 345 172 0 chr3 164248566 164248682 -53788476 - L2 LINE L2 -5 3267 3132 1072 199 68 3 chr3 164249994 164250290 -53786868 + L1ME4a LINE L1 3712 4026 -2120 816 163 0 0 chr3 164250291 164250414 -53786744 + FLAM_C SINE Alu 1 123 -20 1574 206 7 46 chr3 164250454 164250582 -53786576 + L1ME4a LINE L1 4012 4143 -2003 2330 97 3 3 chr3 164250582 164250882 -53786276 + AluSc SINE Alu 1 300 -9 1574 206 7 46 chr3 164250882 164251170 -53785988 + L1ME4a LINE L1 4143 4412 -1734 698 150 0 35 chr3 164251378 164251491 -53785667 + FLAM_A SINE Alu 20 128 -14 595 234 46 78 chr3 164251877 164251990 -53785168 + L1ME4a LINE L1 5530 5645 -476 1491 183 14 17 chr3 164251990 164252308 -53784850 - AluJb SINE Alu 0 317 1 595 234 46 78 chr3 164252308 164252499 -53784659 + L1ME4a LINE L1 5645 5826 -295 186 43 0 0 chr3 164252634 164252657 -53784501 + (TA)n Simple_repeat Simple_repeat 2 24 0 2064 138 27 0 chr3 164252694 164252992 -53784166 + AluSx SINE Alu 1 306 -6 258 136 0 0 chr3 164252999 164253043 -53784115 + (T)n Simple_repeat Simple_repeat 1 44 0 260 255 0 0 chr3 164253044 164253095 -53784063 - MER66B LTR ERV1 -141 345 295 1754 190 0 0 chr3 164253121 164253410 -53783748 + AluJo SINE Alu 1 289 -23 555 74 21 11 chr3 164253468 164253563 -53783595 + (TTCC)n Simple_repeat Simple_repeat 4 99 0 1758 186 24 3 chr3 164253566 164253861 -53783297 - AluJb SINE Alu -5 307 7 1680 193 27 0 chr3 164253941 164254259 -53782899 - AluJb SINE Alu 0 312 1 24 0 0 0 chr3 164254655 164254679 -53782479 + AT_rich Low_complexity Low_complexity 1 24 0 671 253 19 84 chr3 164254754 164255125 -53782033 - L1M4 LINE L1 -1282 4864 4518 2022 131 0 0 chr3 164255230 164255504 -53781654 + AluSx SINE Alu 2 275 -37 1381 204 22 51 chr3 164256059 164256243 -53780915 - AluJo SINE Alu -5 307 134 2093 126 7 0 chr3 164256243 164256536 -53780622 - AluSx SINE Alu -17 295 1 1381 204 22 51 chr3 164256536 164256665 -53780493 - AluJo SINE Alu -178 134 3 503 272 110 63 chr3 164256709 164256927 -53780231 + L1ME4a LINE L1 5622 5828 -293 1659 162 7 11 chr3 164256927 164257211 -53779947 - AluJb SINE Alu -18 294 12 503 272 110 63 chr3 164257211 164257328 -53779830 + L1ME4a LINE L1 5828 5938 -183 581 254 124 0 chr3 164257328 164257513 -53779645 + MER3 DNA MER1_type 1 208 -1 503 272 110 63 chr3 164257513 164257639 -53779519 + L1ME4a LINE L1 5938 6106 -15 2215 117 17 0 chr3 164258183 164258483 -53778675 + AluSx SINE Alu 1 305 -7 21 0 0 0 chr3 164258636 164258657 -53778501 + AT_rich Low_complexity Low_complexity 1 21 0 1491 88 60 5 chr3 164258657 164258873 -53778285 - L1PB1 LINE L1 0 6151 5924 386 318 15 15 chr3 164258900 164259032 -53778126 - MIR SINE MIR -128 134 3 2194 89 14 3 chr3 164259091 164259382 -53777776 - AluSq SINE Alu -19 294 1 976 134 0 0 chr3 164259665 164259792 -53777366 - FLAM_C SINE Alu -16 127 1 3999 163 30 7 chr3 164260468 164261222 -53775936 - L1MB7 LINE L1 -9 6175 5404 2272 104 3 3 chr3 164261232 164261539 -53775619 - AluSx SINE Alu -5 307 1 1967 120 37 27 chr3 164262907 164263207 -53773951 + AluSx SINE Alu 1 303 -9 732 188 7 14 chr3 164263529 164263673 -53773485 + FLAM_C SINE Alu 1 143 0 1080 188 14 14 chr3 164264234 164264442 -53772716 + AluJo SINE Alu 87 294 -18 522 138 165 28 chr3 164264451 164264560 -53772598 - FLAM_C SINE Alu -9 124 1 1785 178 84 7 chr3 164264589 164265016 -53772142 + MLT1C LTR MaLR 8 467 0 2221 177 99 33 chr3 164266013 164266312 -53770846 - Tigger7 DNA MER2_type 0 2487 2209 1338 177 146 8 chr3 164266312 164266572 -53770586 + AluSg1 SINE Alu 1 296 -13 2221 177 99 33 chr3 164266572 164266836 -53770322 - Tigger7 DNA MER2_type -278 2209 2 1534 202 13 13 chr3 164267259 164267566 -53769592 + AluJb SINE Alu 1 307 -5 341 148 0 0 chr3 164267898 164267951 -53769207 - MLT1A1 LTR MaLR 0 365 313 540 125 31 10 chr3 164267951 164268047 -53769111 + MER4A LTR ERV1 1 98 -566 1752 121 3 65 chr3 164268050 164268415 -53768743 + MER4A LTR ERV1 264 664 0 1724 122 90 0 chr3 164268418 164268706 -53768452 + MER4C-int LTR ERV1 1 314 -6284 228 56 0 56 chr3 164268725 164268761 -53768397 + LTR49 LTR ERV1 280 313 -282 1468 109 38 4 chr3 164268761 164269000 -53768158 + MER4C-int LTR ERV1 865 1111 -5487 219 114 0 0 chr3 164269000 164269035 -53768123 + (TG)n Simple_repeat Simple_repeat 2 36 0 6879 119 48 16 chr3 164269035 164270328 -53766830 + MER4C-int LTR ERV1 1161 2495 -4103 1339 150 71 0 chr3 164270328 164270568 -53766590 - LTR8 LTR ERV1 -434 257 1 2419 106 125 17 chr3 164270568 164271104 -53766054 + MER4C-int LTR ERV1 2737 3330 -3268 * 15286 91 40 18 chr3 164271096 164273663 -53763495 + MER4C-int LTR ERV1 3918 6585 -13 28 0 0 0 chr3 164273665 164273693 -53763465 + AT_rich Low_complexity Low_complexity 1 28 0 2013 169 44 20 chr3 164273742 164274192 -53762966 + MER4C LTR ERV1 1 461 -4 925 138 7 14 chr3 164274223 164274368 -53762790 - MLT1A1 LTR MaLR 0 365 222 2780 89 24 21 chr3 164274488 164274981 -53762177 + MER4C-int LTR ERV1 6047 6585 -13 28 0 0 0 chr3 164274983 164275011 -53762147 + AT_rich Low_complexity Low_complexity 1 28 0 2839 134 36 2 chr3 164275060 164275508 -53761650 + MER4C LTR ERV1 1 463 -2 2291 169 3 6 chr3 164275536 164275902 -53761256 - MLT1A1 LTR MaLR 0 365 1 231 176 4 59 chr3 164276126 164276205 -53760953 + AluS SINE Alu 12 65 -238 453 176 0 0 chr3 164276267 164276409 -53760749 + T-rich Low_complexity Low_complexity 1 142 0 190 0 0 62 chr3 164276593 164276625 -53760533 + (TA)n Simple_repeat Simple_repeat 2 31 0 559 283 98 61 chr3 164276639 164278019 -53759139 + L1MC4a LINE L1 4501 5384 -762 995 245 107 0 chr3 164278264 164278574 -53758584 + L2 LINE L2 1817 2159 -1155 1018 204 180 62 chr3 164278583 164279182 -53757976 + L2 LINE L2 2680 3311 -2 477 245 73 20 chr3 164279399 164279550 -53757608 - MIR SINE MIR -66 196 38 1574 170 0 0 chr3 164279896 164280167 -53756991 + AluJb SINE Alu 38 308 0 536 361 68 20 chr3 164280381 164280824 -53756334 + HAL1 LINE L1 818 1281 -1226 406 311 3 78 chr3 164280857 164280912 -53756246 + HAL1 LINE L1 1514 1572 -935 1465 78 0 88 chr3 164280912 164281129 -53756029 - AluY SINE Alu -19 292 95 406 311 3 78 chr3 164281129 164281366 -53755792 + HAL1 LINE L1 1572 1784 -723 2382 101 0 0 chr3 164281415 164281711 -53755447 - AluSg SINE Alu -13 297 2 21 36 0 0 chr3 164282815 164282843 -53754315 + AT_rich Low_complexity Low_complexity 1 28 0 774 181 49 83 chr3 164283053 164283096 -53754062 + MER20 DNA MER1_type 19 62 -157 2690 46 0 0 chr3 164283096 164283401 -53753757 - AluY SINE Alu -6 305 1 774 181 49 83 chr3 164283401 164283562 -53753596 + MER20 DNA MER1_type 62 216 -3 246 32 0 0 chr3 164283715 164283746 -53753412 + (TG)n Simple_repeat Simple_repeat 1 31 0 392 147 32 11 chr3 164283746 164283841 -53753317 + GA-rich Low_complexity Low_complexity 2 98 0 1016 94 222 6 chr3 164283891 164284062 -53753096 + AluJo SINE Alu 86 293 -19 228 154 0 0 chr3 164284526 164284578 -53752580 + CT-rich Low_complexity Low_complexity 1 52 0 192 97 0 0 chr3 164284630 164284661 -53752497 + (TCC)n Simple_repeat Simple_repeat 2 32 0 243 163 61 0 chr3 164285135 164285184 -53751974 - MER58A DNA MER1_type -33 74 23 937 204 0 0 chr3 164285467 164285634 -53751524 - AluJo SINE Alu -16 296 130 504 0 0 0 chr3 164285635 164285691 -53751467 + (TTATA)n Simple_repeat Simple_repeat 4 59 0 2290 81 0 0 chr3 164285693 164285978 -53751180 - AluY SINE Alu -26 285 1 1379 107 141 67 chr3 164285987 164286257 -53750901 - AluJo SINE Alu -22 290 1 229 255 174 40 chr3 164286927 164287076 -53750082 + MIR SINE MIR 29 197 -65 735 173 39 0 chr3 164287096 164287223 -53749935 - AluJo SINE Alu -170 132 1 21 0 0 0 chr3 164287245 164287266 -53749892 + AT_rich Low_complexity Low_complexity 1 21 0 1688 158 48 45 chr3 164287320 164287516 -53749642 - THE1C LTR MaLR 0 375 176 2395 80 3 7 chr3 164287516 164287817 -53749341 - AluY SINE Alu -11 300 1 1688 158 48 45 chr3 164287817 164287994 -53749164 - THE1C LTR MaLR -199 176 1 3191 133 11 17 chr3 164288094 164288225 -53748933 - L1MA6 LINE L1 0 6300 6170 2422 92 83 11 chr3 164288225 164288573 -53748585 - THE1C LTR MaLR 0 375 3 3191 133 11 17 chr3 164288573 164288967 -53748191 - L1MA6 LINE L1 -130 6170 5778 1789 176 3 0 chr3 164288967 164289251 -53747907 - AluJo SINE Alu -17 295 11 3693 139 5 2 chr3 164289276 164289887 -53747271 - L1MA6 LINE L1 -841 5305 4693 841 168 0 0 chr3 164290154 164290285 -53746873 + FRAM SINE Alu 1 131 -45 1544 167 37 84 chr3 164291124 164291507 -53745651 + MLT1A1 LTR MaLR 1 365 0 659 266 83 117 chr3 164291633 164292129 -53745029 - MLT1J LTR MaLR -30 481 3 353 191 0 0 chr3 164292280 164292343 -53744815 - MER5A DNA MER1_type -2 187 125 1918 158 3 16 chr3 164292343 164292659 -53744499 + AluSx SINE Alu 1 312 0 23618 94 6 57 chr3 164292664 164297427 -53739731 + L1P3 LINE L1 5 4562 -1899 3807 34 2 0 chr3 164297425 164297869 -53739289 + L1PA7 LINE L1 5458 5902 -252 * 187 54 54 0 chr3 164297902 164297939 -53739219 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 * 570 15 0 0 chr3 164297938 164298005 -53739153 + (CA)n Simple_repeat Simple_repeat 2 68 0 1517 166 21 21 chr3 164298041 164298331 -53738827 - AluJo SINE Alu -20 292 3 473 239 0 60 chr3 164298334 164298378 -53738780 - MER5A DNA MER1_type -74 115 70 2518 69 0 19 chr3 164298378 164298695 -53738463 - AluY SINE Alu 0 311 1 473 239 0 60 chr3 164298695 164298767 -53738391 - MER5A DNA MER1_type -119 70 6 2396 68 3 10 chr3 164299212 164299520 -53737638 - AluY SINE Alu -5 306 1 2339 107 3 0 chr3 164299628 164299937 -53737221 + AluSp SINE Alu 1 310 -3 1919 185 16 35 chr3 164299971 164300397 -53736761 + L1MB8 LINE L1 5755 6172 -6 2549 109 19 6 chr3 164300910 164301269 -53735889 - THE1B LTR MaLR 0 364 1 296 180 57 131 chr3 164301736 164301781 -53735377 + MIR SINE MIR 150 197 -65 1054 211 8 0 chr3 164301781 164302028 -53735130 - L1MA4 LINE L1 0 6300 6052 296 180 57 131 chr3 164302028 164302104 -53735054 + MIR SINE MIR 197 262 0 198 298 61 26 chr3 164302773 164302887 -53734271 + L2 LINE L2 3146 3263 -9 1708 151 50 7 chr3 164303211 164303489 -53733669 - AluJb SINE Alu -22 290 1 421 289 6 18 chr3 164303507 164303673 -53733485 - L1ME LINE L1 -346 5775 5612 233 300 133 0 chr3 164303753 164303843 -53733315 + MARNA DNA Mariner 121 222 -364 992 93 23 12 chr3 164304105 164304277 -53732881 + (TTTC)n Simple_repeat Simple_repeat 1 174 0 761 161 31 8 chr3 164304284 164304440 -53732718 - FLAM_C SINE Alu 0 169 11 221 0 35 0 chr3 164304676 164304705 -53732453 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 656 237 54 83 chr3 164305114 164305333 -53731825 + LTR16C LTR ERVL 209 420 -71 2173 86 0 86 chr3 164305333 164305670 -53731488 - AluSx SINE Alu -3 309 2 656 237 54 83 chr3 164305670 164305728 -53731430 + LTR16C LTR ERVL 420 478 -13 344 321 58 82 chr3 164305861 164306191 -53730967 - L2 LINE L2 -85 3187 2866 30 0 0 0 chr3 164306742 164306772 -53730386 + AT_rich Low_complexity Low_complexity 1 30 0 1758 140 49 3 chr3 164306772 164307057 -53730101 - AluJo SINE Alu -14 298 1 488 275 89 27 chr3 164307426 164307639 -53729519 + MIR SINE MIR 25 247 -15 796 301 119 16 chr3 164307643 164308095 -53729063 - LTR33 LTR ERVL -1 520 22 1993 107 17 37 chr3 164308218 164308518 -53728640 + AluSq SINE Alu 1 294 -19 2275 108 0 0 chr3 164309140 164309436 -53727722 - AluSx SINE Alu -16 296 1 740 226 23 0 chr3 164309499 164309676 -53727482 + MER113 DNA MER1_type? 43 223 -298 2027 197 44 82 chr3 164309833 164310452 -53726706 + MER63C DNA MER1_type 1 595 -335 649 189 68 0 chr3 164310483 164310615 -53726543 + MER63C DNA MER1_type 790 930 0 952 253 96 64 chr3 164310759 164311124 -53726034 + L2 LINE L2 2828 3213 -100 1914 155 0 19 chr3 164311124 164311441 -53725717 - AluSx SINE Alu -1 311 1 952 253 96 64 chr3 164311441 164311546 -53725612 + L2 LINE L2 3213 3313 0 328 146 87 87 chr3 164311604 164311707 -53725451 - L1MC5 LINE L1 -442 7519 7417 638 167 56 0 chr3 164311913 164312021 -53725137 - L1M4 LINE L1 -1177 4969 4856 2013 204 112 120 chr3 164312177 164312468 -53724690 + L1MC5 LINE L1 6693 6985 -976 2296 112 0 0 chr3 164312468 164312762 -53724396 - AluSx SINE Alu -18 294 1 2013 204 112 120 chr3 164312762 164313690 -53723468 + L1MC5 LINE L1 6985 7903 -58 2296 101 3 0 chr3 164313725 164314021 -53723137 + AluSx SINE Alu 1 297 -15 290 248 157 0 chr3 164314021 164314142 -53723016 + HAL1b LINE L1 774 913 -435 538 275 24 30 chr3 164315076 164315243 -53721915 + MIR SINE MIR 23 188 -74 1207 264 113 85 chr3 164315959 164317241 -53719917 + L2 LINE L2 1612 2980 -333 307 258 167 15 chr3 164317373 164317505 -53719653 - MER5B DNA MER1_type 0 178 27 676 186 154 0 chr3 164317537 164317693 -53719465 - MER5A DNA MER1_type 0 189 10 671 246 52 5 chr3 164317915 164318099 -53719059 + MIR SINE MIR 20 218 -44 180 156 133 0 chr3 164318509 164318554 -53718604 - L2 LINE L2 0 3313 3263 244 298 0 12 chr3 164319520 164319604 -53717554 - MIR SINE MIR -57 151 69 25 31 0 0 chr3 164320157 164320189 -53716969 + AT_rich Low_complexity Low_complexity 1 32 0 321 350 0 0 chr3 164320560 164320660 -53716498 + MIR SINE MIR 20 119 -89 1661 127 160 0 chr3 164321215 164321483 -53715675 + AluSx SINE Alu 1 311 -1 342 0 0 0 chr3 164326453 164326491 -53710667 + (CA)n Simple_repeat Simple_repeat 2 39 0 2421 69 0 0 chr3 164326704 164327007 -53710151 - AluY SINE Alu -8 303 1 1847 129 3 7 chr3 164327325 164327637 -53709521 + AluSx SINE Alu 1 311 0 1231 136 9 57 chr3 164327687 164327915 -53709243 - MER20 DNA MER1_type -2 217 1 2177 82 0 70 chr3 164328870 164329199 -53707959 + AluSq SINE Alu 1 306 -7 1263 201 76 40 chr3 164330028 164330425 -53706733 + L1MC4 LINE L1 7632 8042 0 1446 176 3 34 chr3 164330428 164330724 -53706434 + AluJb SINE Alu 1 287 -25 697 212 0 8 chr3 164331796 164331928 -53705230 - FLAM_C SINE Alu -1 132 2 1853 114 38 10 chr3 164332361 164332650 -53704508 + AluSx SINE Alu 1 297 -15 756 190 0 29 chr3 164332933 164333070 -53704088 - FLAM_C SINE Alu 0 133 1 2104 97 0 17 chr3 164333538 164333838 -53703320 + AluSx SINE Alu 1 295 -17 445 145 89 113 chr3 164333850 164333974 -53703184 - MER53 DNA DNA -68 121 1 566 236 98 116 chr3 164334615 164334726 -53702432 + L1ME4a LINE L1 5478 5590 -531 1827 169 10 0 chr3 164334726 164335027 -53702131 + AluJb SINE Alu 1 304 -8 566 236 98 116 chr3 164335027 164335356 -53701802 + L1ME4a LINE L1 5590 5907 -214 2682 110 54 5 chr3 164335356 164335764 -53701394 - MSTA LTR MaLR 0 428 1 566 236 98 116 chr3 164335764 164335927 -53701231 + L1ME4a LINE L1 5907 6071 -50 199 279 35 58 chr3 164336239 164336325 -53700833 - MIR SINE MIR -17 245 162 1913 138 0 41 chr3 164336533 164336716 -53700442 - AluSg SINE Alu -4 306 140 2298 78 7 7 chr3 164336716 164337025 -53700133 - AluSp SINE Alu -3 310 2 1913 138 0 41 chr3 164337025 164337160 -53699998 - AluSg SINE Alu -170 140 1 352 255 128 85 chr3 164338331 164338472 -53698686 - MIR SINE MIR -71 137 3 299 330 68 17 chr3 164338472 164338587 -53698571 - MIR3 SINE MIR -13 195 75 541 272 50 78 chr3 164338773 164338909 -53698249 + Charlie8 DNA MER1_type 1 126 -215 892 142 0 8 chr3 164338909 164339043 -53698115 + FLAM_C SINE Alu 1 133 0 541 272 50 78 chr3 164339043 164339189 -53697969 + Charlie8 DNA MER1_type 126 275 -66 186 43 0 0 chr3 164339236 164339259 -53697899 + (TCTCC)n Simple_repeat Simple_repeat 2 24 0 2226 90 0 13 chr3 164339780 164339947 -53697211 - AluSx SINE Alu -11 301 138 2300 94 0 7 chr3 164339947 164340255 -53696903 - AluSp SINE Alu -7 306 1 2226 90 0 13 chr3 164340255 164340388 -53696770 - AluSx SINE Alu -174 138 5 330 221 21 95 chr3 164340831 164340926 -53696232 + MIR3 SINE MIR 71 158 -50 344 211 44 33 chr3 164340999 164341089 -53696069 - MIR3 SINE MIR -11 197 107 347 285 31 39 chr3 164342564 164342694 -53694464 + L1ME4a LINE L1 5768 5896 -225 33 0 0 0 chr3 164343861 164343894 -53693264 + GC_rich Low_complexity Low_complexity 1 33 0 232 161 16 48 chr3 164344711 164344773 -53692385 + G-rich Low_complexity Low_complexity 3 62 0 437 239 29 22 chr3 164345475 164345613 -53691545 + MIR SINE MIR 123 261 -1 283 264 248 50 chr3 164345785 164345906 -53691252 - L2 LINE L2 0 3313 3169 539 246 174 7 chr3 164346227 164346435 -53690723 - MIR SINE MIR 0 262 19 1299 142 66 0 chr3 164348033 164348259 -53688899 - AluJb SINE Alu -15 297 57 472 266 129 7 chr3 164348359 164348498 -53688660 - MIR SINE MIR -21 241 86 1456 206 92 104 chr3 164348502 164348686 -53688472 + MLT1F1 LTR MaLR 18 203 -364 1817 211 33 6 chr3 164348686 164349050 -53688108 - MLT1A2 LTR MaLR 0 374 1 1456 206 92 104 chr3 164349050 164349326 -53687832 + MLT1F1 LTR MaLR 203 498 -69 1038 194 0 0 chr3 164349326 164349501 -53687657 - FAM SINE Alu 0 175 1 1456 206 92 104 chr3 164349501 164349571 -53687587 + MLT1F1 LTR MaLR 498 567 0 236 213 125 0 chr3 164349809 164349889 -53687269 + L1MC/D LINE L1 5729 5818 -1990 2016 127 0 3 chr3 164349928 164350236 -53686922 + AluSx SINE Alu 1 307 -5 43 0 0 0 chr3 164350687 164350730 -53686428 + AT_rich Low_complexity Low_complexity 1 43 0 2336 93 3 0 chr3 164351035 164351347 -53685811 - AluSp SINE Alu 0 313 1 656 243 91 19 chr3 164351348 164351558 -53685600 - MIR SINE MIR -36 226 2 1591 181 7 3 chr3 164353224 164353511 -53683647 - AluJo SINE Alu -24 288 1 847 198 0 0 chr3 164353954 164354111 -53683047 - AluJb SINE Alu -25 287 131 276 240 125 19 chr3 164354112 164354216 -53682942 + MIR SINE MIR 40 154 -108 1802 157 4 0 chr3 164354297 164354577 -53682581 - AluSx SINE Alu -31 281 1 484 250 7 61 chr3 164354704 164354852 -53682306 - MER91B DNA MER1_type -50 140 1 244 167 181 14 chr3 164354854 164354926 -53682232 + MLT1K LTR MaLR 164 247 -341 360 292 0 42 chr3 164354929 164355050 -53682108 + LTR40c LTR ERVL 178 339 -180 4006 171 112 27 chr3 164355050 164356536 -53680622 - MER52A LTR ERV1 0 1755 1 557 248 0 83 chr3 164356538 164356695 -53680463 + LTR40a LTR ERVL 340 483 -36 555 184 40 0 chr3 164356872 164356997 -53680161 - L1MA10 LINE L1 0 6334 6205 1496 231 44 62 chr3 164357028 164357631 -53679527 - L1MC5 LINE L1 -33 7928 7395 1273 162 86 13 chr3 164357631 164357855 -53679303 + MER33 DNA MER1_type 1 254 -2331 2230 87 7 3 chr3 164357855 164358155 -53679003 - AluSg SINE Alu -9 301 1 1273 162 86 13 chr3 164358155 164358232 -53678926 + MER33 DNA MER1_type 254 324 0 1496 231 44 62 chr3 164358232 164358365 -53678793 - L1MC5 LINE L1 -566 7395 7261 2199 229 45 6 chr3 164358388 164358881 -53678277 + MER90 LTR ERV1 72 583 -31 369 111 0 32 chr3 164359095 164359158 -53678000 - MLT1C LTR MaLR 0 467 407 2160 83 0 21 chr3 164359163 164359452 -53677706 + AluSg SINE Alu 1 283 -27 400 40 0 0 chr3 164359452 164359502 -53677656 - MLT2A2 LTR ERVL -403 50 1 198 0 0 0 chr3 164359588 164359610 -53677548 + (A)n Simple_repeat Simple_repeat 1 22 0 277 324 20 10 chr3 164361226 164361328 -53675830 - MIR SINE MIR -123 139 37 231 250 198 38 chr3 164362094 164362265 -53674893 - MIR3 SINE MIR -7 201 2 865 308 178 49 chr3 164362289 164363081 -53674077 - L2 LINE L2 -34 3238 2550 2209 146 12 47 chr3 164363081 164363485 -53673673 + MLT1B LTR MaLR 1 390 0 865 308 178 49 chr3 164363485 164363826 -53673332 - L2 LINE L2 -722 2550 2254 1956 143 42 68 chr3 164363826 164364210 -53672948 + MLT1A2 LTR MaLR 1 374 0 865 308 178 49 chr3 164364210 164364725 -53672433 - L2 LINE L2 -1018 2254 1336 302 309 47 47 chr3 164364840 164364971 -53672187 - MIR SINE MIR -67 141 22 560 225 27 0 chr3 164366095 164366206 -53670952 + MER81 DNA DNA 1 114 0 3459 113 74 0 chr3 164366207 164366746 -53670412 - L1MC3 LINE L1 -1 7784 7206 1904 151 0 0 chr3 164366746 164367050 -53670108 - AluJb SINE Alu -8 304 1 288 292 11 11 chr3 164367088 164367177 -53669981 - MLT1F1 LTR MaLR -444 123 35 323 165 273 16 chr3 164367183 164367233 -53669925 - L1MC3 LINE L1 -691 7094 7058 195 100 0 0 chr3 164367233 164367263 -53669895 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 323 165 273 16 chr3 164367263 164367333 -53669825 - L1MC3 LINE L1 -727 7058 6943 315 71 0 0 chr3 164367329 164367371 -53669787 - L1M LINE L1 -935 5424 5383 * 1595 198 0 8 chr3 164367374 164367642 -53669516 + Tigger7 DNA MER2_type 1 266 -284 620 163 10 0 chr3 164367640 164367738 -53669420 + Tigger7 DNA MER2_type 2489 2587 0 * 478 111 0 0 chr3 164367738 164367810 -53669348 - L1M LINE L1 -963 5381 5310 2054 124 0 0 chr3 164367814 164368104 -53669054 + AluSc SINE Alu 1 290 -19 33 25 0 0 chr3 164368598 164368638 -53668520 + AT_rich Low_complexity Low_complexity 1 40 0 1329 128 0 55 chr3 164368681 164368916 -53668242 + AluJo SINE Alu 1 222 -90 301 322 59 0 chr3 164369746 164369864 -53667294 - MER117 DNA MER1_type -26 171 47 640 280 70 53 chr3 164370204 164370746 -53666412 + L1MC4a LINE L1 5379 5929 -1879 315 71 0 0 chr3 164370860 164370902 -53666256 + (TG)n Simple_repeat Simple_repeat 2 43 0 25 0 0 0 chr3 164370958 164370983 -53666175 + AT_rich Low_complexity Low_complexity 1 25 0 325 242 21 21 chr3 164370984 164371079 -53666079 - MIR SINE MIR -74 134 40 1547 228 36 22 chr3 164371798 164372157 -53665001 + MLT1D LTR MaLR 1 364 -141 248 269 79 58 chr3 164372233 164372460 -53664698 - MLT1K LTR MaLR -162 426 179 477 321 25 0 chr3 164372896 164373055 -53664103 - MER117 DNA MER1_type -29 168 6 216 386 0 0 chr3 164373091 164373161 -53663997 - L3 LINE CR1 -605 972 903 1544 185 109 3 chr3 164373962 164374292 -53662866 - MLT1A1 LTR MaLR 0 365 1 679 154 36 154 chr3 164374554 164374640 -53662518 + MLT1A1 LTR MaLR 1 96 -269 1330 131 13 9 chr3 164374640 164374869 -53662289 + L1MA3 LINE L1 6076 6305 0 679 154 36 154 chr3 164374869 164375002 -53662156 + MLT1A1 LTR MaLR 96 194 -171 434 276 128 23 chr3 164376515 164376549 -53660609 + L1MC4 LINE L1 7749 7778 -264 1022 226 43 87 chr3 164376549 164376964 -53660194 - MLT2C1 LTR ERVL 0 397 1 434 276 128 23 chr3 164376964 164377194 -53659964 + L1MC4 LINE L1 7778 8041 -1 219 244 0 93 chr3 164377195 164377281 -53659877 + L2 LINE L2 3190 3267 -5 2080 142 0 0 chr3 164377424 164377733 -53659425 - AluSx SINE Alu -3 309 1 24 0 0 0 chr3 164377741 164377765 -53659393 + AT_rich Low_complexity Low_complexity 1 24 0 1069 107 0 17 chr3 164377765 164377943 -53659215 + (TTC)n Simple_repeat Simple_repeat 3 177 0 735 138 46 0 chr3 164377946 164378098 -53659060 + CT-rich Low_complexity Low_complexity 3 161 0 1694 156 4 18 chr3 164378098 164378373 -53658785 - AluSx SINE Alu -39 273 3 631 150 8 75 chr3 164378376 164378509 -53658649 - AluJo/FLAM SINE Alu -174 128 5 303 202 83 64 chr3 164378610 164378719 -53658439 + MIR SINE MIR 79 189 -73 630 194 125 7 chr3 164378789 164378933 -53658225 + MER104 DNA Tc2 17 177 -3 257 296 197 26 chr3 164378936 164379088 -53658070 + MIR SINE MIR 78 255 -7 21 0 0 0 chr3 164379983 164380004 -53657154 + AT_rich Low_complexity Low_complexity 1 21 0 492 174 72 22 chr3 164380177 164380315 -53656843 - L1MC4a LINE L1 0 7808 7664 602 247 47 21 chr3 164380497 164380655 -53656503 - L1MC4a LINE L1 -1868 5940 5775 2258 126 0 0 chr3 164380655 164380964 -53656194 - AluSx SINE Alu -3 309 1 602 247 47 21 chr3 164380964 164380995 -53656163 - L1MC4a LINE L1 -2033 5775 5746 1129 174 57 9 chr3 164381802 164382014 -53655144 - MLT1D LTR MaLR -283 222 1 602 192 12 42 chr3 164382468 164382635 -53654523 - Charlie2 DNA MER1_type -16 2846 2685 785 161 8 0 chr3 164382644 164382768 -53654390 + AluJb SINE Alu 7 131 -181 1869 199 93 51 chr3 164382773 164383437 -53653721 - Charlie2 DNA MER1_type -162 2700 2009 248 228 140 61 chr3 164383406 164383520 -53653638 - Charlie2a DNA MER1_type -1389 1473 1351 * 2497 159 37 31 chr3 164383904 164384337 -53652821 - LTR32 LTR ERVL -5 466 28 1561 151 139 27 chr3 164384337 164384674 -53652484 + THE1C LTR MaLR 1 375 0 2497 159 37 31 chr3 164384674 164384694 -53652464 - LTR32 LTR ERVL -443 28 10 2410 214 154 2 chr3 164384722 164385287 -53651871 + MLT2F LTR ERVL 5 655 -8 1890 232 130 11 chr3 164385287 164386010 -53651148 - Charlie2a DNA MER1_type -1513 1349 541 311 266 16 24 chr3 164386018 164386142 -53651016 + L1MC/D LINE L1 5317 5439 -2369 351 265 201 20 chr3 164386142 164386346 -53650812 - L2 LINE L2 -2679 635 395 594 259 109 5 chr3 164386355 164386548 -53650610 + L1MC/D LINE L1 5400 5612 -2196 1441 181 23 109 chr3 164388424 164388658 -53648500 + MLT1A1 LTR MaLR 13 203 -162 2131 114 0 0 chr3 164388658 164388948 -53648210 - AluSq SINE Alu -3 310 21 1441 181 23 109 chr3 164388948 164389099 -53648059 + MLT1A1 LTR MaLR 203 365 0 599 275 55 32 chr3 164391203 164391421 -53645737 - MLT1J LTR MaLR -288 223 1 1711 98 0 0 chr3 164391565 164391779 -53645379 + AluSg/x SINE Alu 83 296 -14 261 290 43 0 chr3 164391848 164391941 -53645217 - L2 LINE L2 -218 3054 2958 2124 122 0 11 chr3 164392991 164393303 -53643855 + AluSx SINE Alu 1 309 0 2791 183 37 22 chr3 164393419 164393966 -53643192 - LTR38 LTR ERV1 -1 555 1 1735 189 45 15 chr3 164394464 164395155 -53642003 - MER49 LTR ERV1 -170 753 4 1422 210 60 58 chr3 164395158 164395539 -53641619 - MER49-int LTR ERV1 -1 6757 6376 752 166 110 7 chr3 164395532 164395677 -53641481 - MER49-int LTR ERV1 -615 6143 5984 * 2545 57 0 0 chr3 164395719 164396015 -53641143 + AluY SINE Alu 1 296 -15 23 0 0 0 chr3 164396153 164396176 -53640982 + AT_rich Low_complexity Low_complexity 1 23 0 729 147 33 114 chr3 164396191 164396375 -53640783 - MER4-int LTR ERV1 -4166 3954 3786 1914 166 0 13 chr3 164396475 164396777 -53640381 - AluJb SINE Alu -14 298 1 1319 164 46 53 chr3 164396818 164397234 -53639924 - MER4-int LTR ERV1 -2162 4169 3731 11304 35 1 1 chr3 164397269 164399367 -53637791 - L1PA4 LINE L1 -3 6152 4057 4190 143 47 74 chr3 164399367 164400350 -53636808 - MER4-int LTR ERV1 -6480 1640 685 225 248 55 28 chr3 164400374 164400519 -53636639 + L1ME4a LINE L1 5951 6099 -22 25 0 0 0 chr3 164400582 164400607 -53636551 + AT_rich Low_complexity Low_complexity 1 25 0 6695 69 19 38 chr3 164400607 164401579 -53635579 - SVA Other Other -1 1385 433 1330 89 16 93 chr3 164401594 164402176 -53634982 - SVA Other Other -520 866 433 5678 80 22 62 chr3 164402195 164403034 -53634124 - SVA Other Other -520 866 63 1587 5 0 0 chr3 164403034 164403237 -53633921 + (GGGAGA)n Simple_repeat Simple_repeat 1 203 0 5678 80 22 62 chr3 164403237 164403298 -53633860 - SVA Other Other -1323 63 1 335 88 0 18 chr3 164403298 164403355 -53633803 + (GGGAGA)n Simple_repeat Simple_repeat 2 57 0 23 0 0 0 chr3 164403399 164403422 -53633736 + AT_rich Low_complexity Low_complexity 1 23 0 202 125 0 25 chr3 164403446 164403486 -53633672 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1777 212 52 46 chr3 164404523 164405023 -53632135 + MLT1D LTR MaLR 1 503 -2 249 233 17 0 chr3 164405700 164405760 -53631398 + (CAATA)n Simple_repeat Simple_repeat 4 64 0 477 273 30 8 chr3 164406568 164406700 -53630458 - MIR SINE MIR -120 142 8 822 117 28 7 chr3 164406846 164406991 -53630167 - L1MA2 LINE L1 -120 6184 6037 22 0 0 0 chr3 164406997 164407019 -53630139 + AT_rich Low_complexity Low_complexity 1 22 0 1979 150 3 16 chr3 164407651 164407964 -53629194 + AluJb SINE Alu 1 309 -3 423 281 47 8 chr3 164408045 164408173 -53628985 + MIR SINE MIR 116 248 -14 266 0 0 29 chr3 164408369 164408404 -53628754 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1451 158 17 0 chr3 164408428 164408662 -53628496 - AluJo SINE Alu -31 281 44 5375 162 67 15 chr3 164408662 164409677 -53627481 - LTR38-int LTR ERV1 -664 1122 1 2824 173 25 34 chr3 164409677 164410238 -53626920 - LTR38 LTR ERV1 0 556 1 2632 7 0 3 chr3 164410244 164410526 -53626632 + AluYa5 SINE Alu 23 303 -8 219 203 58 43 chr3 164410826 164410895 -53626263 + CT-rich Low_complexity Low_complexity 4 73 0 1848 156 3 7 chr3 164411045 164411351 -53625807 + AluSx SINE Alu 3 307 0 1639 144 99 63 chr3 164411391 164411725 -53625433 - LTR18B LTR ERVL 0 614 269 428 189 28 3 chr3 164411729 164411866 -53625292 - HERVL18 LTR ERVL -3741 2306 2119 * 971 224 16 29 chr3 164411865 164412228 -53624930 - HERVL18 LTR ERVL -4237 1810 1388 269 191 0 0 chr3 164412215 164412262 -53624896 - HERVL18 LTR ERVL -5085 962 916 * 931 233 12 0 chr3 164412256 164412428 -53624730 - HERVL18 LTR ERVL -5381 666 493 * 1690 186 10 3 chr3 164412422 164412718 -53624440 - HERVL18 LTR ERVL -5749 298 1 2575 127 65 142 chr3 164412780 164413412 -53623746 - LTR18B LTR ERVL -31 583 1 180 0 0 0 chr3 164413565 164413585 -53623573 + (TG)n Simple_repeat Simple_repeat 1 20 0 873 123 4 15 chr3 164416878 164417139 -53620019 + (TTCC)n Simple_repeat Simple_repeat 1 257 0 551 221 8 8 chr3 164417670 164417797 -53619361 - L2 LINE L2 -6 3307 3181 312 91 0 0 chr3 164417797 164417841 -53619317 + (TGAA)n Simple_repeat Simple_repeat 3 46 0 249 284 116 40 chr3 164418187 164418371 -53618787 + MIR SINE MIR 9 206 -56 2001 144 115 35 chr3 164419291 164419753 -53617405 + MER4C-int LTR ERV1 4062 4361 -762 494 184 202 0 chr3 164419775 164419884 -53617274 - AluSq/x SINE Alu -181 132 2 876 135 6 41 chr3 164419886 164420056 -53617102 + MER4C-int LTR ERV1 5488 5651 -680 15881 181 34 29 chr3 164420133 164421840 -53615318 - L1PA13 LINE L1 -32 6780 5083 387 0 0 0 chr3 164421840 164421883 -53615275 + (TG)n Simple_repeat Simple_repeat 1 43 0 15881 181 34 29 chr3 164421883 164421955 -53615203 - L1PA13 LINE L1 -1729 5083 5013 2191 116 3 7 chr3 164421955 164422257 -53614901 - AluSc SINE Alu -8 301 1 15881 181 34 29 chr3 164422257 164423064 -53614094 - L1PA13 LINE L1 -1799 5013 4211 1939 133 3 76 chr3 164423064 164423394 -53613764 - AluSx SINE Alu -6 306 1 15881 181 34 29 chr3 164423394 164424568 -53612590 - L1PA13 LINE L1 -2601 4211 3044 1908 215 42 78 chr3 164424568 164425141 -53612017 - MLT2B3 LTR ERVL -2 552 1 15881 181 34 29 chr3 164425141 164427438 -53609720 - L1PA13 LINE L1 -3768 3044 705 4383 124 12 28 chr3 164427438 164428082 -53609076 + MER51A LTR ERV1 1 634 0 15881 181 34 29 chr3 164428082 164428791 -53608367 - L1PA13 LINE L1 -6107 705 1 3102 127 17 23 chr3 164428802 164429323 -53607835 + MER4C-int LTR ERV1 6081 6598 0 2724 81 91 17 chr3 164429327 164429735 -53607423 + MER4C LTR ERV1 1 438 -27 279 54 0 0 chr3 164430123 164430160 -53606998 + (TC)n Simple_repeat Simple_repeat 2 38 0 379 0 39 0 chr3 164430160 164430211 -53606947 + (CA)n Simple_repeat Simple_repeat 1 53 0 1871 234 119 43 chr3 164431421 164432003 -53605155 - MER57A-int LTR ERV1 -807 7009 6384 292 321 0 0 chr3 164431933 164432039 -53605119 - MER70-int LTR ERVL -805 4218 4113 * 418 193 0 60 chr3 164432243 164432326 -53604832 - MER57A-int LTR ERV1 -690 4181 4104 306 321 9 9 chr3 164432258 164432367 -53604791 - MER70-int LTR ERVL -1228 3795 3687 * 1389 259 31 35 chr3 164432364 164432985 -53604173 - MER57A-int LTR ERV1 -778 6205 2477 2586 191 11 26 chr3 164433161 164433694 -53603464 - MER57A-int LTR ERV1 -1712 5825 5301 1096 189 78 101 chr3 164433688 164434624 -53602534 - MER57A-int LTR ERV1 -2253 2683 1755 * 794 265 66 21 chr3 164434622 164434909 -53602249 - MER57A-int LTR ERV1 -2291 4467 4168 * 23 0 0 0 chr3 164434909 164434932 -53602226 + AT_rich Low_complexity Low_complexity 1 23 0 797 172 0 0 chr3 164434932 164435048 -53602110 - FLAM_C SINE Alu -25 118 3 343 309 20 34 chr3 164435122 164435271 -53601887 - MER34C LTR ERV1 -158 427 281 1450 177 90 11 chr3 164435476 164435753 -53601405 - AluJo SINE Alu -11 301 3 2324 148 11 21 chr3 164436250 164436627 -53600531 + THE1C LTR MaLR 3 375 0 385 295 32 0 chr3 164436791 164436886 -53600272 - MER57A-int LTR ERV1 -7210 327 230 597 289 78 18 chr3 164436886 164437104 -53600054 - MER57A-int LTR ERV1 -4156 2175 1945 456 129 0 0 chr3 164437132 164437202 -53599956 - LTR54 LTR ERV1 0 510 441 811 211 179 5 chr3 164437202 164437392 -53599766 - MER57A-int LTR ERV1 -7312 225 3 1896 195 12 81 chr3 164437396 164437630 -53599528 - MER57A LTR ERV1 -1 402 210 2358 89 0 3 chr3 164437630 164437933 -53599225 + AluY SINE Alu 1 302 -9 1896 195 12 81 chr3 164437933 164438128 -53599030 - MER57A LTR ERV1 -193 210 3 461 158 12 0 chr3 164438135 164438217 -53598941 - L1M4 LINE L1 -700 5484 5402 699 203 14 7 chr3 164438228 164438366 -53598792 + MER70B LTR ERVL 24 162 -416 * 2479 201 47 2 chr3 164438362 164438830 -53598328 + MER70B LTR ERVL 90 578 0 2702 204 36 2 chr3 164438834 164439422 -53597736 - L1M4 LINE L1 -743 5403 4796 2245 248 29 9 chr3 164439443 164440023 -53597135 - L1ME3A LINE L1 -7 6163 5574 516 186 129 0 chr3 164440025 164440165 -53596993 + L1ME LINE L1 5148 5305 -841 527 160 0 53 chr3 164440169 164440263 -53596895 + FLAM_A SINE Alu 42 130 -12 4173 73 6 0 chr3 164440270 164440792 -53596366 + LTR17 LTR ERV1 256 780 0 48564 55 19 3 chr3 164440792 164446715 -53590443 + HERV17 LTR ERV1 1 6019 -2607 294 77 0 0 chr3 164446708 164446747 -53590411 + HERV17 LTR ERV1 7510 7548 -1078 * 2487 51 0 0 chr3 164446737 164447029 -53590129 + HERV17 LTR ERV1 8335 8626 0 2708 42 0 0 chr3 164447029 164447339 -53589819 + LTR17 LTR ERV1 1 310 -470 542 222 84 34 chr3 164447339 164447609 -53589549 + L1ME LINE L1 5276 5562 -608 1039 324 94 25 chr3 164448340 164448849 -53588309 + MLT1K LTR MaLR 16 559 -29 3646 165 79 4 chr3 164449200 164449920 -53587238 + Charlie1 DNA MER1_type 1987 2760 -1 661 279 141 74 chr3 164449923 164449986 -53587172 - L2 LINE L2 -119 3194 3137 2348 124 19 40 chr3 164449986 164450194 -53586964 - THE1B LTR MaLR 0 364 166 2262 103 3 0 chr3 164450194 164450495 -53586663 + AluSp SINE Alu 1 302 -11 2348 124 19 40 chr3 164450495 164450658 -53586500 - THE1B LTR MaLR -198 166 1 661 279 141 74 chr3 164450658 164451294 -53585864 - L2 LINE L2 -176 3137 2449 297 0 0 0 chr3 164451510 164451543 -53585615 + (TG)n Simple_repeat Simple_repeat 1 33 0 2390 77 0 7 chr3 164451986 164452296 -53584862 - AluSg1 SINE Alu -1 308 1 840 290 166 52 chr3 164452856 164453705 -53583453 + L2 LINE L2 2015 2960 -354 195 125 31 0 chr3 164453948 164453980 -53583178 + L2 LINE L2 3205 3237 -35 2061 122 10 10 chr3 164454002 164454313 -53582845 + AluSx SINE Alu 1 311 -1 207 0 0 0 chr3 164454316 164454339 -53582819 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 2364 54 7 0 chr3 164454835 164455150 -53582008 - AluY SINE Alu 0 317 1 281 189 40 14 chr3 164455522 164455596 -53581562 + MLT1L LTR MaLR 23 98 -517 25 0 0 0 chr3 164456334 164456359 -53580799 + AT_rich Low_complexity Low_complexity 1 25 0 2002 119 18 4 chr3 164457582 164457860 -53579298 + AluSx SINE Alu 1 282 -30 264 324 46 0 chr3 164458066 164458174 -53578984 + MIR SINE MIR 118 230 -32 283 203 40 40 chr3 164458672 164458746 -53578412 + L2 LINE L2 3186 3259 -13 1740 176 3 0 chr3 164460021 164460305 -53576853 - AluJb SINE Alu -3 309 25 304 301 34 56 chr3 164463949 164464195 -53572963 + MIR SINE MIR 3 241 -21 1182 182 28 5 chr3 164465277 164465491 -53571667 + MER20 DNA MER1_type 1 219 0 395 253 40 0 chr3 164465499 164465598 -53571560 + MER5B DNA MER1_type 1 103 -75 816 192 66 42 chr3 164465605 164465772 -53571386 - MER45A DNA AcHobo -7 171 1 392 228 13 0 chr3 164465773 164465852 -53571306 - MER5B DNA MER1_type -98 80 1 282 296 64 16 chr3 164466166 164466291 -53570867 - MIR3 SINE MIR -69 139 9 270 0 0 0 chr3 164466325 164466355 -53570803 + (TG)n Simple_repeat Simple_repeat 1 30 0 330 297 0 0 chr3 164466557 164466668 -53570490 - MER113 DNA MER1_type? -410 111 1 2089 116 10 3 chr3 164467117 164467410 -53569748 + AluSx SINE Alu 1 295 -17 935 100 0 50 chr3 164467505 164467645 -53569513 + FLAM_C SINE Alu 1 133 0 282 116 0 0 chr3 164468565 164468608 -53568550 + (TA)n Simple_repeat Simple_repeat 2 44 0 22 56 0 0 chr3 164468684 164468720 -53568438 + AT_rich Low_complexity Low_complexity 1 36 0 225 283 48 140 chr3 164470733 164471048 -53566110 + L2 LINE L2 2973 3258 -14 191 292 175 8 chr3 164471887 164472007 -53565151 + MIR SINE MIR 58 197 -65 2239 163 63 24 chr3 164472500 164472922 -53564236 - MLT1D LTR MaLR 0 505 62 3068 175 30 6 chr3 164472922 164473459 -53563699 - MER44D DNA MER2_type 0 605 1 2239 163 63 24 chr3 164473459 164473497 -53563661 - MLT1D LTR MaLR -443 62 27 649 232 49 38 chr3 164473510 164473695 -53563463 - Charlie8 DNA MER1_type -2174 243 57 1696 199 72 50 chr3 164473718 164473844 -53563314 - MLT1C LTR MaLR 0 467 345 2369 61 3 3 chr3 164473844 164474140 -53563018 + AluY SINE Alu 2 297 -14 1696 199 72 50 chr3 164474140 164474470 -53562688 - MLT1C LTR MaLR -122 345 1 1999 211 46 46 chr3 164475110 164475613 -53561545 - MLT1D LTR MaLR -2 503 1 322 336 0 0 chr3 164477167 164477286 -53559872 - MIR SINE MIR -142 120 2 2305 118 0 0 chr3 164477494 164477799 -53559359 + AluSx SINE Alu 1 305 -7 1152 230 80 27 chr3 164478064 164478438 -53558720 + LTR16A1 LTR ERVL 50 443 -14 2013 92 55 38 chr3 164478677 164478969 -53558189 + AluSq SINE Alu 1 297 -16 1996 134 0 0 chr3 164479730 164480005 -53557153 - AluSx SINE Alu -37 275 1 467 232 116 32 chr3 164481074 164481264 -53555894 - MIR SINE MIR -8 254 49 6483 134 28 41 chr3 164481354 164481475 -53555683 - L1PBa LINE L1 -4364 2499 2378 1981 132 4 0 chr3 164481475 164481779 -53555379 - AluSx SINE Alu 0 305 1 6483 134 28 41 chr3 164481779 164482811 -53554347 - L1PBa LINE L1 -4485 2378 1360 592 237 174 66 chr3 164482812 164483208 -53553950 + MER113 DNA MER1_type? 76 514 -7 423 0 0 0 chr3 164483336 164483383 -53553775 + (TG)n Simple_repeat Simple_repeat 2 48 0 369 259 12 0 chr3 164483998 164484083 -53553075 + MIR SINE MIR 60 145 -117 273 350 0 0 chr3 164485087 164485167 -53551991 + L2 LINE L2 3184 3263 -9 278 402 8 8 chr3 164485177 164485299 -53551859 - MIR3 SINE MIR -49 159 38 744 249 38 44 chr3 164485299 164485765 -53551393 - LTR33 LTR ERVL 0 521 7 2133 130 10 0 chr3 164487527 164487835 -53549323 - AluSx SINE Alu -1 311 1 348 222 0 49 chr3 164488124 164488205 -53548953 - MER91A DNA MER1_type -119 77 1 11380 30 2 1 chr3 164490758 164492853 -53544305 - L1PA4 LINE L1 -3 6152 4057 4317 139 45 74 chr3 164492853 164493838 -53543320 - LOR1-int LTR ERV1 -6480 1640 685 225 248 55 28 chr3 164493863 164494008 -53543150 + L1ME4a LINE L1 5951 6099 -22 25 0 0 0 chr3 164494070 164494095 -53543063 + AT_rich Low_complexity Low_complexity 1 25 0 7533 61 7 6 chr3 164494095 164495581 -53541577 - SVA Other Other -799 1385 55 189 0 0 0 chr3 164495582 164495603 -53541555 + (GGGAGA)n Simple_repeat Simple_repeat 2 22 0 23 0 0 0 chr3 164495668 164495691 -53541467 + GC_rich Low_complexity Low_complexity 1 23 0 245 61 0 0 chr3 164545735 164545768 -53491390 - Alu SINE Alu -275 33 1 1159 82 6 31 chr3 164545911 164546070 -53491088 + AluSg/x SINE Alu 81 235 -77 242 231 192 0 chr3 164547028 164547106 -53490052 + MIR SINE MIR 170 262 0 206 81 27 0 chr3 164549310 164549347 -53487811 + (TTTTTG)n Simple_repeat Simple_repeat 1 38 0 414 0 0 0 chr3 164549957 164550003 -53487155 + (TG)n Simple_repeat Simple_repeat 1 46 0 186 47 0 70 chr3 164550216 164550259 -53486899 + (GAA)n Simple_repeat Simple_repeat 1 40 0 419 291 111 0 chr3 164550261 164550378 -53486780 - MIR SINE MIR -112 150 21 703 208 71 12 chr3 164551762 164551930 -53485228 - MER5B DNA MER1_type 0 178 1 2584 33 0 7 chr3 164553908 164554207 -53482951 + AluY SINE Alu 1 297 -14 821 144 16 0 chr3 164554507 164554632 -53482526 - FLAM_A SINE Alu -5 137 11 3108 222 67 18 chr3 164556549 164557684 -53479474 + L1ME1 LINE L1 4968 6165 -1 229 347 25 25 chr3 164557951 164558072 -53479086 + MIR3 SINE MIR 40 160 -48 452 186 176 0 chr3 164558517 164558619 -53478539 + FLAM_C SINE Alu 2 121 -12 444 240 70 54 chr3 164558871 164559237 -53477921 - LTR33 LTR ERVL -8 513 109 202 116 23 47 chr3 164559301 164559344 -53477814 + (TCTA)n Simple_repeat Simple_repeat 2 43 0 3323 191 37 11 chr3 164560047 164560800 -53476358 - L1 LINE L1 -1954 4428 3656 2122 162 30 23 chr3 164560802 164561298 -53475860 + MLT2A2 LTR ERVL 3 510 -44 1889 84 8 0 chr3 164561298 164561559 -53475599 + L1PA6 LINE L1 5891 6153 -1 28 0 0 0 chr3 164561577 164561605 -53475553 + AT_rich Low_complexity Low_complexity 1 28 0 476 72 0 0 chr3 164561605 164561674 -53475484 + MLT2A2 LTR ERVL 385 453 0 11798 172 30 43 chr3 164561674 164562086 -53475072 - L1 LINE L1 -2722 3660 3244 1740 160 67 0 chr3 164562086 164562399 -53474759 + MER44D DNA MER2_type 3 606 -3 11798 172 30 43 chr3 164562399 164564735 -53472423 - L1 LINE L1 -3138 3244 879 2095 125 0 0 chr3 164564735 164565050 -53472108 - AluSx SINE Alu 0 317 3 11798 172 30 43 chr3 164565050 164565595 -53471563 - L1 LINE L1 -5503 879 417 1781 199 0 0 chr3 164565595 164565892 -53471266 + AluJo SINE Alu 1 297 -15 11798 172 30 43 chr3 164565892 164566289 -53470869 - L1 LINE L1 -5965 417 16 335 200 191 26 chr3 164566390 164566505 -53470653 + MIR SINE MIR 129 262 0 32 0 0 0 chr3 164566505 164566537 -53470621 + AT_rich Low_complexity Low_complexity 1 32 0 240 398 25 8 chr3 164567728 164567969 -53469189 + L2 LINE L2 2422 2666 -648 648 135 16 32 chr3 164568089 164568215 -53468943 + L1MC1 LINE L1 6210 6333 0 10936 111 26 19 chr3 164568652 164569988 -53467170 - Tigger1 DNA MER2_type -1 2417 1063 2129 122 7 7 chr3 164569988 164570292 -53466866 - AluSx SINE Alu -8 304 1 10936 111 26 19 chr3 164570292 164570733 -53466425 - Tigger1 DNA MER2_type -1355 1063 627 817 157 0 0 chr3 164570731 164570865 -53466293 - Tigger1 DNA MER2_type -2284 134 1 * 201 94 0 0 chr3 164570947 164570979 -53466179 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 196 339 32 0 chr3 164570980 164571042 -53466116 + MIR SINE MIR 21 84 -124 820 244 5 45 chr3 164571235 164571436 -53465722 + MIR SINE MIR 66 258 -4 872 306 90 17 chr3 164572060 164572582 -53464576 - MLT1K LTR MaLR -6 582 23 291 231 0 15 chr3 164572930 164572995 -53464163 + MER5B DNA MER1_type 1 64 -114 3039 193 28 47 chr3 164573032 164573856 -53463302 + L1 LINE L1 4061 4868 -1278 2861 114 14 40 chr3 164573856 164574355 -53462803 + L1MB2 LINE L1 5686 6171 0 301 350 60 0 chr3 164574362 164574462 -53462696 + MER5B DNA MER1_type 63 168 -10 538 281 134 14 chr3 164575555 164575772 -53461386 - MIR SINE MIR 0 262 20 2264 110 0 22 chr3 164576227 164576546 -53460612 + AluSx SINE Alu 1 312 0 615 186 25 0 chr3 164576567 164576685 -53460473 + MIR SINE MIR 142 262 0 1425 258 46 5 chr3 164576788 164577501 -53459657 - MER69 DNA AcHobo -444 782 9 220 231 0 0 chr3 164577509 164577561 -53459597 + MIR SINE MIR 180 231 -31 1080 278 72 38 chr3 164577660 164578132 -53459026 + LTR33 LTR ERVL 34 521 0 719 233 33 60 chr3 164579026 164579241 -53457917 - L2 LINE L2 -1 3312 3104 3069 178 21 30 chr3 164579277 164579844 -53457314 + MER68 LTR ERV1 1 562 0 2370 95 0 3 chr3 164580424 164580728 -53456430 + AluSc SINE Alu 1 303 -6 261 248 0 66 chr3 164580942 164581063 -53456095 + CT-rich Low_complexity Low_complexity 4 116 0 858 303 80 82 chr3 164581558 164582151 -53455007 + L2 LINE L2 1165 1758 -1556 2408 100 0 0 chr3 164582151 164582461 -53454697 - AluSg SINE Alu 0 310 1 858 303 80 82 chr3 164582461 164582645 -53454513 + L2 LINE L2 1758 1942 -1372 4686 62 7 0 chr3 164582645 164583211 -53453947 - L1PA7 LINE L1 0 6154 5585 858 303 80 82 chr3 164583211 164583385 -53453773 + L2 LINE L2 1942 2115 -1199 755 289 11 0 chr3 164583520 164583710 -53453448 - Charlie8 DNA MER1_type -2153 264 73 463 350 143 43 chr3 164583804 164584532 -53452626 + L2 LINE L2 2161 2961 -353 919 372 71 12 chr3 164585058 164585639 -53451519 + L3 LINE CR1 962 1576 -1 2223 134 57 8 chr3 164586033 164586399 -53450759 - MSTB LTR MaLR 0 426 43 283 267 29 76 chr3 164586821 164586926 -53450232 + L2 LINE L2 3173 3272 0 2783 157 4 18 chr3 164586995 164587447 -53449711 + L1PB4 LINE L1 5710 6155 -1 271 254 64 36 chr3 164588342 164588452 -53448706 + MIR SINE MIR 142 254 -8 942 231 132 60 chr3 164588513 164588997 -53448161 + LTR33 LTR ERVL 3 521 0 1253 226 189 7 chr3 164589004 164589442 -53447716 + LTR33 LTR ERVL 4 521 0 374 173 13 13 chr3 164590116 164590191 -53446967 - L2 LINE L2 -8 3305 3231 368 265 39 10 chr3 164590308 164590410 -53446748 - L3b LINE CR1 -209 1374 1270 309 314 77 58 chr3 164591872 164592028 -53445130 + L2 LINE L2 3112 3270 -2 447 346 33 19 chr3 164592242 164592499 -53444659 + L2 LINE L2 2941 3272 0 236 228 0 35 chr3 164593093 164593207 -53443951 + (TAA)n Simple_repeat Simple_repeat 1 110 0 380 257 26 79 chr3 164593220 164593372 -53443786 + L1MC4a LINE L1 5508 5651 -470 2378 62 3 10 chr3 164593372 164593676 -53443482 + AluY SINE Alu 1 302 -9 873 207 204 17 chr3 164594176 164594625 -53442533 - MLT1E1 LTR MaLR -38 616 1 441 133 40 0 chr3 164594647 164594722 -53442436 - MLT1D LTR MaLR -9 496 419 * 592 213 85 0 chr3 164594718 164594859 -53442299 - MLT1D LTR MaLR -348 157 5 243 0 0 0 chr3 164594921 164594948 -53442210 + (CA)n Simple_repeat Simple_repeat 2 28 0 231 125 62 0 chr3 164594950 164594998 -53442160 - L1MCa LINE L1 -4358 2068 2018 382 311 94 59 chr3 164595019 164595647 -53441511 - L1ME3 LINE L1 -239 5923 5274 739 254 156 16 chr3 164595658 164595993 -53441165 - MLT1J1 LTR MaLR 0 450 51 785 179 19 6 chr3 164596034 164596190 -53440968 + L1MA10 LINE L1 6175 6332 -2 653 249 115 23 chr3 164596868 164597085 -53440073 - MIR SINE MIR -2 260 24 509 242 168 7 chr3 164597087 164597236 -53439922 + MER5A DNA MER1_type 17 189 0 636 264 63 48 chr3 164597406 164597818 -53439340 - HAL1b LINE L1 -945 403 3 186 103 0 0 chr3 164597843 164597872 -53439286 + (GA)n Simple_repeat Simple_repeat 2 30 0 321 26 0 0 chr3 164597872 164597910 -53439248 + (TG)n Simple_repeat Simple_repeat 2 39 0 319 286 63 32 chr3 164598595 164598784 -53438374 + L1MC4a LINE L1 5703 5897 -1911 324 221 0 0 chr3 164599281 164599358 -53437800 + (CA)n Simple_repeat Simple_repeat 1 77 0 480 143 0 0 chr3 164599502 164599586 -53437572 + (GGAA)n Simple_repeat Simple_repeat 3 86 0 314 106 0 0 chr3 164600052 164600099 -53437059 - MADE1 DNA Mariner -33 47 1 2000 187 56 19 chr3 164600099 164600473 -53436685 - MLT1B LTR MaLR -2 388 1 893 274 161 33 chr3 164600495 164601006 -53436152 - MLT1G1 LTR MaLR 0 595 20 426 107 87 1 chr3 164601382 164601458 -53435700 - L1MC3 LINE L1 -90 7695 6164 842 158 16 0 chr3 164601458 164601585 -53435573 - FLAM_C SINE Alu -13 130 2 2859 146 155 119 chr3 164601589 164601997 -53435161 - L1MC3 LINE L1 -160 7625 7233 253 283 22 11 chr3 164601997 164602089 -53435069 - MLT1F1 LTR MaLR -430 137 45 2859 146 155 119 chr3 164602089 164602465 -53434693 - L1MC3 LINE L1 -552 7233 6718 1641 103 27 18 chr3 164602471 164602695 -53434463 + MER30 DNA MER1_type 4 229 -1 2357 68 0 0 chr3 164602747 164603026 -53434132 + AluY SINE Alu 1 279 -32 291 54 0 0 chr3 164603026 164603063 -53434095 + (TAA)n Simple_repeat Simple_repeat 1 37 0 1761 173 10 29 chr3 164603551 164603857 -53433301 + AluJo SINE Alu 1 300 -12 1916 162 0 25 chr3 164604367 164604681 -53432477 - AluSq SINE Alu -7 306 1 22 35 0 0 chr3 164604689 164604718 -53432440 + AT_rich Low_complexity Low_complexity 1 29 0 432 279 47 35 chr3 164604730 164604902 -53432256 + MIR SINE MIR 5 178 -84 347 201 61 13 chr3 164605111 164605219 -53431939 - MIR SINE MIR -64 144 25 184 349 137 20 chr3 164605209 164605355 -53431803 - L2 LINE L2 -5 3308 3146 * 271 315 0 0 chr3 164605628 164605701 -53431457 - L2 LINE L2 -9 3263 3191 2923 94 22 7 chr3 164606468 164606871 -53430287 + MLT2A1 LTR ERVL 1 409 -35 529 55 39 55 chr3 164606905 164607086 -53430072 + (TA)n Simple_repeat Simple_repeat 2 179 0 305 279 39 19 chr3 164607090 164607194 -53429964 - L1MC4 LINE L1 -1333 6709 6604 411 87 8 63 chr3 164607249 164607375 -53429783 + (TA)n Simple_repeat Simple_repeat 1 119 0 356 69 0 52 chr3 164607407 164607465 -53429693 + MLT2A2 LTR ERVL 399 453 0 4082 75 6 0 chr3 164608309 164608819 -53428339 + L1PA13 LINE L1 5651 6163 0 238 316 115 43 chr3 164609900 164610134 -53427024 + L2 LINE L2 150 400 -2914 1109 276 62 34 chr3 164610474 164610890 -53426268 + MLT1J2 LTR MaLR 21 448 -2 1593 334 142 32 chr3 164610892 164612691 -53424467 + L2 LINE L2 743 2739 -575 293 304 80 9 chr3 164612805 164612917 -53424241 - MER5A DNA MER1_type -33 156 37 201 333 0 81 chr3 164612944 164613031 -53424127 + L2 LINE L2 3150 3229 -43 7164 31 0 0 chr3 164615097 164615922 -53421236 - L1PA3 LINE L1 0 6155 5331 297 0 0 0 chr3 164615972 164616005 -53421153 + (TG)n Simple_repeat Simple_repeat 1 33 0 232 215 139 0 chr3 164617024 164617103 -53420055 - MIR3 SINE MIR -15 193 104 538 198 27 0 chr3 164617105 164617216 -53419942 + L1MC5 LINE L1 6971 7084 -877 1032 212 96 24 chr3 164617222 164617599 -53419559 + L1MC5 LINE L1 7526 7929 -32 2161 112 0 3 chr3 164617747 164618043 -53419115 - AluSx SINE Alu -17 295 1 474 237 186 0 chr3 164618138 164618294 -53418864 - MIR SINE MIR -69 193 9 379 163 33 43 chr3 164618392 164618484 -53418674 - MLT1F1 LTR MaLR 0 567 477 2087 94 3 7 chr3 164618870 164619156 -53418002 + AluSx SINE Alu 1 285 -27 2833 250 84 72 chr3 164619172 164620302 -53416856 - HAL1 LINE L1 -319 2188 1035 2238 119 3 3 chr3 164620302 164620612 -53416546 - AluSx SINE Alu -2 310 1 2833 250 84 72 chr3 164620612 164620908 -53416250 - HAL1 LINE L1 -1472 1035 744 3177 122 17 4 chr3 164620920 164621403 -53415755 + L1MA5A LINE L1 5498 5986 -311 2117 130 10 0 chr3 164623221 164623529 -53413629 - AluSx SINE Alu -1 311 1 378 222 0 49 chr3 164623818 164623899 -53413259 - MER91A DNA MER1_type -119 77 1 1839 166 55 72 chr3 164627821 164628237 -53408921 + MLT2D LTR ERVL 3 411 -3 23 33 0 0 chr3 164628873 164628903 -53408255 + AT_rich Low_complexity Low_complexity 1 30 0 658 273 0 0 chr3 164629246 164629385 -53407773 + MIR SINE MIR 2 140 -122 237 242 84 40 chr3 164629385 164629554 -53407604 - L1M4 LINE L1 -413 5708 4466 229 320 39 29 chr3 164630563 164630666 -53406492 - L3b LINE CR1 -200 1383 1280 283 298 53 0 chr3 164630760 164630854 -53406304 + MIR SINE MIR 34 132 -76 2639 237 73 34 chr3 164631169 164631933 -53405225 + MER21B LTR ERV1 1 794 -69 662 266 61 28 chr3 164631965 164632010 -53405148 + MIR SINE MIR 25 67 -195 2235 174 169 63 chr3 164632010 164632601 -53404557 - MLT1E1 LTR MaLR 0 654 1 662 266 61 28 chr3 164632601 164632769 -53404389 + MIR SINE MIR 67 245 -17 1290 272 127 12 chr3 164632941 164633423 -53403735 - MLT1K LTR MaLR -4 584 48 337 177 163 109 chr3 164634435 164634582 -53402576 + MIR3 SINE MIR 37 191 -17 449 289 0 25 chr3 164635370 164635491 -53401667 + MIR3 SINE MIR 43 160 -48 501 269 19 0 chr3 164635494 164635602 -53401556 + MER58B DNA MER1_type 9 118 -223 1210 170 25 0 chr3 164635658 164635858 -53401300 + MER58B DNA MER1_type 137 341 0 255 231 31 0 chr3 164636179 164636244 -53400914 - MLT1J LTR MaLR -33 478 412 1014 171 183 35 chr3 164636262 164636607 -53400551 + L1MC5 LINE L1 7518 7913 -48 21 36 0 0 chr3 164636872 164636900 -53400258 + AT_rich Low_complexity Low_complexity 1 28 0 2325 82 0 3 chr3 164636939 164637232 -53399926 - AluSc SINE Alu -17 292 1 1000 307 82 3 chr3 164637403 164637768 -53399390 - MLT1J LTR MaLR -114 397 4 297 243 22 124 chr3 164638045 164638214 -53398944 + MIR SINE MIR 41 192 -61 546 113 0 0 chr3 164639411 164639491 -53397667 - MADE1 DNA Mariner 0 80 1 278 270 95 0 chr3 164641699 164641773 -53395385 - L2 LINE L2 -6 3307 3227 252 167 0 0 chr3 164643049 164643097 -53394061 + (CA)n Simple_repeat Simple_repeat 2 49 0 473 171 8 0 chr3 164643449 164643566 -53393592 + (CA)n Simple_repeat Simple_repeat 2 119 0 749 226 107 44 chr3 164645271 164645622 -53391536 - MLT1J2 LTR MaLR -10 399 15 835 165 0 23 chr3 164649000 164649133 -53388025 - FLAM_C SINE Alu -3 130 1 21 36 0 0 chr3 164649273 164649301 -53387857 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr3 164649340 164649369 -53387789 + (CA)n Simple_repeat Simple_repeat 2 30 0 974 200 61 71 chr3 164650612 164650907 -53386251 + MLT1J LTR MaLR 217 508 -3 283 286 124 0 chr3 164651186 164651291 -53385867 + MIR SINE MIR 34 151 -111 924 331 30 1 chr3 164653018 164653407 -53383751 + MER115 DNA AcHobo 1 434 -259 239 309 0 0 chr3 164653403 164653458 -53383700 + MER115 DNA AcHobo 638 692 -1 * 742 283 132 48 chr3 164654861 164655278 -53381880 - L2 LINE L2 0 3313 2862 294 73 0 0 chr3 164656514 164656555 -53380603 + (TC)n Simple_repeat Simple_repeat 2 42 0 265 262 87 81 chr3 164656675 164656824 -53380334 + L2 LINE L2 1994 2143 -1171 221 56 0 28 chr3 164656840 164656876 -53380282 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 7549 34 3 0 chr3 164656876 164657914 -53379244 - L1PA3 LINE L1 -24 6131 5087 924 289 184 30 chr3 164657915 164658778 -53378380 + L2 LINE L2 2139 3163 -150 544 293 23 0 chr3 164658947 164659080 -53378078 + L2 LINE L2 3136 3271 -1 648 263 6 34 chr3 164659103 164659278 -53377880 - MER5B DNA MER1_type -8 170 1 567 225 63 11 chr3 164661019 164661221 -53375937 + LTR50 LTR ERVL 299 456 -67 898 177 5 38 chr3 164661223 164661409 -53375749 - MER5A DNA MER1_type -9 180 1 232 258 79 53 chr3 164662698 164662835 -53374323 - L1ME4a LINE L1 0 6121 5976 360 64 0 0 chr3 164662835 164662882 -53374276 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 232 258 79 53 chr3 164662882 164662934 -53374224 - L1ME4a LINE L1 -145 5976 5927 246 328 38 15 chr3 164663074 164663205 -53373953 - L1ME4a LINE L1 -1998 5810 5677 597 208 0 81 chr3 164664247 164664396 -53372762 - L2 LINE L2 -18 3295 3159 443 264 70 50 chr3 164664486 164664687 -53372471 + MLT1H LTR MaLR 106 310 -239 2074 224 187 32 chr3 164664868 164665711 -53371447 + LTR28 LTR ERV1 5 1020 0 553 285 168 48 chr3 164665725 164666267 -53370891 - L2 LINE L2 -167 3146 2505 566 45 0 0 chr3 164666290 164666357 -53370801 + AluY SINE Alu 2 68 -242 921 112 0 0 chr3 164666357 164666482 -53370676 + AluSg/x SINE Alu 174 298 -14 1156 257 115 34 chr3 164666482 164666709 -53370449 - L2 LINE L2 -844 2470 2263 711 270 61 0 chr3 164666709 164666872 -53370286 - MER96 DNA MER1_type -1 174 2 1156 257 115 34 chr3 164666872 164667115 -53370043 - L2 LINE L2 -1051 2263 1962 1222 298 117 49 chr3 164667394 164667903 -53369255 + L1MC4a LINE L1 5401 5946 -356 22 35 0 0 chr3 164667912 164667941 -53369217 + AT_rich Low_complexity Low_complexity 1 29 0 479 222 255 0 chr3 164667945 164668098 -53369060 - MIR SINE MIR -66 196 5 228 224 0 0 chr3 164668324 164668382 -53368776 + L1MC5 LINE L1 7500 7557 -404 237 139 0 0 chr3 164668412 164668455 -53368703 + (T)n Simple_repeat Simple_repeat 1 43 0 1819 51 0 0 chr3 164668458 164668674 -53368484 - L1PA2 LINE L1 0 6155 5940 216 111 0 0 chr3 164668834 164668870 -53368288 + (TGGA)n Simple_repeat Simple_repeat 2 37 0 16773 175 73 7 chr3 164668882 164669914 -53367244 + L1PA14 LINE L1 2251 3214 -2947 2890 10 0 0 chr3 164669914 164670225 -53366933 + AluY SINE Alu 1 311 0 16773 175 73 7 chr3 164670225 164672987 -53364171 + L1PA14 LINE L1 3214 6160 -1 2457 104 65 74 chr3 164672996 164673061 -53364097 - MSTA LTR MaLR 0 428 364 2111 122 0 0 chr3 164673061 164673349 -53363809 - AluSx SINE Alu -24 288 1 2457 104 65 74 chr3 164673349 164673715 -53363443 - MSTA LTR MaLR -64 364 1 2428 165 40 2 chr3 164673869 164674269 -53362889 + MER47B DNA MER2_type 3 417 -1 180 0 0 0 chr3 164674345 164674365 -53362793 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 180 0 0 0 chr3 164674646 164674666 -53362492 + (TTC)n Simple_repeat Simple_repeat 2 21 0 545 231 48 70 chr3 164675203 164675250 -53361908 - MIR SINE MIR 0 262 216 1841 136 47 0 chr3 164675250 164675529 -53361629 - AluSx SINE Alu -20 292 1 545 231 48 70 chr3 164675529 164675667 -53361491 - MIR SINE MIR -46 216 81 730 181 20 103 chr3 164675695 164675899 -53361259 - L1ME1 LINE L1 -3 6163 5977 * 1674 221 58 6 chr3 164675898 164676562 -53360596 - L1ME1 LINE L1 -562 5604 4914 * 2669 218 32 4 chr3 164676561 164677120 -53360038 + L1ME1 LINE L1 5587 6161 -5 714 308 137 61 chr3 164678650 164678950 -53358208 + L2 LINE L2 1392 1668 -1646 306 0 0 0 chr3 164678950 164678984 -53358174 + (CA)n Simple_repeat Simple_repeat 2 35 0 714 308 137 61 chr3 164678984 164679390 -53357768 + L2 LINE L2 1668 2042 -1272 2107 92 7 21 chr3 164679390 164679672 -53357486 - AluSg SINE Alu -32 278 1 714 308 137 61 chr3 164679672 164679961 -53357197 + L2 LINE L2 2042 2464 -850 1057 283 148 8 chr3 164680457 164680814 -53356344 + MLT1I LTR MaLR 1 407 -2 186 286 0 20 chr3 164680905 164680954 -53356204 + L2 LINE L2 3245 3292 -21 2222 120 0 0 chr3 164681058 164681358 -53355800 + AluSx SINE Alu 1 300 -12 1007 202 6 6 chr3 164682972 164683150 -53354008 - MER5B DNA MER1_type 0 178 1 9922 81 17 0 chr3 164684738 164686769 -53350389 + L1PA7 LINE L1 4103 6149 -5 453 290 141 20 chr3 164686850 164687070 -53350088 + MIR SINE MIR 3 250 -12 1693 170 34 14 chr3 164687749 164688043 -53349115 + AluJb SINE Alu 1 300 -12 314 400 24 6 chr3 164688635 164688800 -53348358 - MIR3 SINE MIR -5 203 36 336 279 50 121 chr3 164688811 164689051 -53348107 - L2 LINE L2 -9 3263 3041 930 182 0 21 chr3 164690544 164690731 -53346427 + LTR9B LTR ERV1 379 561 -83 1228 131 48 32 chr3 164690742 164690994 -53346164 + MER33 DNA MER1_type 43 298 -26 198 0 0 0 chr3 164691003 164691025 -53346133 + (TA)n Simple_repeat Simple_repeat 2 23 0 2227 89 0 0 chr3 164691026 164691337 -53345821 - AluSx SINE Alu 0 311 1 539 160 10 0 chr3 164691732 164691832 -53345326 + L1MA5A LINE L1 6077 6177 -120 874 169 7 7 chr3 164691832 164691980 -53345178 - FRAM SINE Alu -21 155 8 683 154 0 0 chr3 164692003 164692113 -53345045 + L1MA5A LINE L1 6178 6287 -10 2265 207 59 48 chr3 164692527 164693152 -53344006 + MLT1E2 LTR MaLR 1 626 0 2160 125 0 10 chr3 164693358 164693671 -53343487 + AluSx SINE Alu 3 312 0 272 244 26 96 chr3 164693745 164693860 -53343298 + MLT1F LTR MaLR 24 130 -412 25 0 0 0 chr3 164694396 164694421 -53342737 + AT_rich Low_complexity Low_complexity 1 25 0 381 22 0 0 chr3 164695043 164695089 -53342069 + (TG)n Simple_repeat Simple_repeat 2 47 0 249 33 0 0 chr3 164695519 164695549 -53341609 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 546 220 0 9 chr3 164695551 164695660 -53341498 - L2 LINE L2 -13 3300 3193 487 227 57 28 chr3 164695852 164695993 -53341165 - MIR SINE MIR -5 257 113 766 224 136 22 chr3 164696056 164696284 -53340874 - MIR SINE MIR 0 262 9 2172 117 3 0 chr3 164697132 164697430 -53339728 - AluSq SINE Alu -8 305 7 223 333 63 0 chr3 164697604 164697730 -53339428 - L2 LINE L2 -12 3301 3168 2260 103 7 3 chr3 164697804 164698114 -53339044 - AluSp SINE Alu -2 311 1 246 377 23 23 chr3 164698326 164698456 -53338702 + L2 LINE L2 3142 3271 -1 204 391 81 0 chr3 164698666 164698827 -53338331 - MIR SINE MIR -42 220 47 33 25 0 0 chr3 164699650 164699690 -53337468 + AT_rich Low_complexity Low_complexity 1 40 0 450 255 177 14 chr3 164700416 164700557 -53336601 + MER5A DNA MER1_type 20 183 -6 217 293 66 0 chr3 164701494 164701600 -53335558 + L2 LINE L2 1883 1995 -1319 2295 108 7 0 chr3 164701612 164701917 -53335241 - AluSx SINE Alu -5 307 1 511 201 19 39 chr3 164701925 164701945 -53335213 - L1MA10 LINE L1 0 6334 6315 3209 210 122 25 chr3 164701945 164702383 -53334775 - L1ME1 LINE L1 -8 6158 5764 1766 147 37 0 chr3 164702383 164702656 -53334502 - AluJb SINE Alu -29 283 1 3209 210 122 25 chr3 164702656 164703237 -53333921 - L1ME1 LINE L1 -402 5764 5050 219 402 12 0 chr3 164703498 164703580 -53333578 + MIR SINE MIR 15 97 -165 500 259 77 62 chr3 164703594 164703934 -53333224 - MER68 LTR ERV1 -46 516 172 389 269 67 7 chr3 164704134 164704283 -53332875 + MIR SINE MIR 105 262 0 239 256 47 35 chr3 164704292 164704378 -53332780 + MIR SINE MIR 121 207 -55 1504 116 172 0 chr3 164705627 164705877 -53331281 - AluJb SINE Alu -19 293 1 806 182 27 32 chr3 164705901 164706088 -53331070 + MER112 DNA MER1_type 5 190 -70 755 220 101 59 chr3 164706194 164706480 -53330678 - LTR16C LTR ERVL 0 491 194 2198 129 0 0 chr3 164706810 164707113 -53330045 + AluSx SINE Alu 1 303 -9 725 289 26 34 chr3 164707345 164707611 -53329547 - L1ME LINE L1 -331 5790 5527 2418 60 0 13 chr3 164707633 164707934 -53329224 - AluY SINE Alu -14 297 1 2421 87 0 0 chr3 164708171 164708482 -53328676 + AluY SINE Alu 1 311 0 21 71 0 0 chr3 164708630 164708672 -53328486 + AT_rich Low_complexity Low_complexity 1 42 0 534 279 202 41 chr3 164708691 164709131 -53328027 - MLT1J LTR MaLR 0 511 1 577 268 152 8 chr3 164709131 164709374 -53327784 - L1ME LINE L1 -324 5797 5520 2162 110 0 3 chr3 164710580 164710893 -53326265 + AluSx SINE Alu 1 312 0 1765 156 33 88 chr3 164710904 164711301 -53325857 + THE1C LTR MaLR 1 375 0 620 301 80 36 chr3 164712130 164712379 -53324779 - MIR SINE MIR -2 260 1 777 249 91 82 chr3 164712637 164712759 -53324399 + L1MC4a LINE L1 5307 5426 -2382 2093 93 4 4 chr3 164712759 164713057 -53324101 + AluSx SINE Alu 13 310 0 777 249 91 82 chr3 164713057 164713274 -53323884 + L1MC4a LINE L1 5426 5650 -2158 648 171 13 63 chr3 164713281 164713439 -53323719 + LTR41 LTR ERVL 27 176 -597 2367 102 0 0 chr3 164713850 164714153 -53323005 - AluSx SINE Alu -9 303 1 773 209 118 71 chr3 164714175 164714386 -53322772 + MER58A DNA MER1_type 1 221 -3 273 155 68 48 chr3 164714388 164714491 -53322667 + LTR41 LTR ERVL 654 758 -15 3343 236 100 31 chr3 164714526 164714804 -53322354 + L1MC4a LINE L1 5703 5961 -1847 2246 75 7 0 chr3 164714804 164715132 -53322026 + AluSg SINE Alu 1 330 0 3343 236 100 31 chr3 164715132 164716037 -53321121 + L1MC4a LINE L1 5961 6968 -840 1726 188 3 0 chr3 164716073 164716366 -53320792 - AluJo SINE Alu -16 296 3 652 212 136 20 chr3 164716444 164716542 -53320616 + L1MC4 LINE L1 7613 7698 -344 2123 119 0 3 chr3 164716542 164716854 -53320304 + AluSx SINE Alu 1 311 0 652 212 136 20 chr3 164716854 164717004 -53320154 + L1MC4 LINE L1 7698 7891 -151 253 203 47 16 chr3 164717075 164717139 -53320019 + L1MC4 LINE L1 7926 7991 -51 548 286 90 16 chr3 164717255 164717444 -53319714 - MIR SINE MIR -38 224 22 399 209 0 0 chr3 164718052 164718162 -53318996 + (TG)n Simple_repeat Simple_repeat 2 111 0 294 142 217 104 chr3 164718353 164718459 -53318699 + MIR SINE MIR 13 130 -132 610 225 122 9 chr3 164718461 164718674 -53318484 - LTR16A1 LTR ERVL -7 450 214 1105 117 0 47 chr3 164718675 164718846 -53318312 - AluSg/x SINE Alu -16 294 132 2250 95 3 0 chr3 164718846 164719131 -53318027 - AluSx SINE Alu -6 306 21 591 256 59 59 chr3 164719139 164719358 -53317800 - LTR16A1 LTR ERVL -237 220 2 284 232 0 0 chr3 164719365 164719421 -53317737 + MIR SINE MIR 161 216 -46 200 222 93 19 chr3 164719428 164719482 -53317676 - MIR SINE MIR -3 259 202 2090 131 0 0 chr3 164719581 164719879 -53317279 + AluSx SINE Alu 1 298 -14 296 316 38 47 chr3 164721009 164721221 -53315937 - L2 LINE L2 -55 3258 3049 527 246 17 0 chr3 164721672 164721790 -53315368 - L2 LINE L2 -2 3311 3192 367 310 49 35 chr3 164723004 164723230 -53313928 + L2 LINE L2 176 404 -2910 516 284 49 61 chr3 164723417 164723762 -53313396 - MLT1J LTR MaLR -170 341 1 244 308 15 54 chr3 164724648 164724778 -53312380 - L3 LINE CR1 -758 819 695 396 244 156 0 chr3 164725132 164725267 -53311891 - MER102b DNA MER1_type -49 292 137 2197 131 0 0 chr3 164726031 164726337 -53310821 - AluSx SINE Alu -6 306 1 1316 177 50 31 chr3 164726461 164726778 -53310380 + MER33 DNA MER1_type 1 323 -1 305 336 22 15 chr3 164727307 164727441 -53309717 + MIR SINE MIR 23 157 -105 261 0 0 0 chr3 164727448 164727477 -53309681 + (TTCCC)n Simple_repeat Simple_repeat 1 29 0 343 109 0 0 chr3 164727580 164727626 -53309532 - AluSx SINE Alu -255 46 1 2146 121 0 0 chr3 164727707 164728024 -53309134 + AluSx SINE Alu 2 318 0 187 299 35 69 chr3 164729713 164729800 -53307358 - L2 LINE L2 -2 3311 3228 267 250 57 43 chr3 164729828 164729968 -53307190 + L1MC5 LINE L1 7790 7931 -30 2419 37 0 30 chr3 164729978 164730274 -53306884 + AluY SINE Alu 1 287 -24 267 253 126 32 chr3 164730869 164730964 -53306194 + MIR SINE MIR 49 152 -110 189 327 67 19 chr3 164734538 164734642 -53302516 - MIR3 SINE MIR -11 197 89 317 209 73 27 chr3 164734868 164734978 -53302180 + MER113 DNA MER1_type? 2 116 -405 21 57 0 0 chr3 164735021 164735056 -53302102 + AT_rich Low_complexity Low_complexity 1 35 0 203 196 0 59 chr3 164735290 164735341 -53301817 + MIR SINE MIR 79 126 -136 581 280 108 9 chr3 164735971 164736203 -53300955 + MIR SINE MIR 7 261 -1 277 276 46 63 chr3 164736249 164736423 -53300735 + L2 LINE L2 3142 3312 -1 2293 82 0 10 chr3 164736610 164736935 -53300223 + AluSx SINE Alu 1 312 0 652 186 114 18 chr3 164737165 164737332 -53299826 - MER5A DNA MER1_type -2 187 5 318 213 21 32 chr3 164737537 164737631 -53299527 + L2 LINE L2 2740 2832 -482 481 306 0 0 chr3 164737695 164737842 -53299316 + MIR SINE MIR 116 262 0 455 264 141 25 chr3 164738054 164738331 -53298827 + L2 LINE L2 3005 3313 0 1513 166 12 12 chr3 164738910 164739163 -53297995 + AluJo SINE Alu 36 288 -24 438 257 19 9 chr3 164739182 164739287 -53297871 + MER5A DNA MER1_type 80 185 -4 274 214 0 0 chr3 164740394 164740450 -53296708 + L1MC5 LINE L1 7834 7889 -72 369 222 77 9 chr3 164740525 164740675 -53296483 + HAL1b LINE L1 1193 6118 -3 181 231 202 29 chr3 164740843 164740947 -53296211 + MIR SINE MIR 33 154 -108 500 177 30 91 chr3 164741022 164741186 -53295972 - MER63 DNA MER1_type 0 1688 672 1710 126 0 12 chr3 164741188 164741434 -53295724 - AluSx SINE Alu -14 298 56 695 193 0 0 chr3 164741615 164741734 -53295424 + FLAM_A SINE Alu 5 123 -10 523 266 125 78 chr3 164741749 164742158 -53295000 + MLT1L LTR MaLR 168 595 -20 825 183 22 83 chr3 164743458 164743687 -53293471 + MER20B DNA MER1_type 1 215 -4 202 342 0 26 chr3 164743773 164743890 -53293268 - L2 LINE L2 -234 3038 2925 1367 232 76 18 chr3 164744187 164744616 -53292542 - MLT1C LTR MaLR -3 464 18 2054 134 47 33 chr3 164744664 164745023 -53292135 - THE1B LTR MaLR 0 364 1 1381 176 143 14 chr3 164745129 164745492 -53291666 - Charlie1 DNA MER1_type 0 2761 2352 348 141 176 56 chr3 164746770 164746961 -53290197 - MER5C DNA MER1_type -2 322 52 446 241 121 20 chr3 164747124 164747323 -53289835 - MIR SINE MIR -1 261 43 1104 172 103 39 chr3 164748392 164748625 -53288533 - AluJb SINE Alu -64 248 1 187 339 48 32 chr3 164749480 164749604 -53287554 - MIR SINE MIR -12 250 125 1226 265 85 9 chr3 164750491 164750925 -53286233 - MLT1C LTR MaLR 0 467 1 810 311 139 25 chr3 164751179 164752061 -53285097 + L2 LINE L2 1752 2734 -580 438 181 40 27 chr3 164752064 164752213 -53284945 + CT-rich Low_complexity Low_complexity 5 155 0 654 196 0 0 chr3 164752213 164752325 -53284833 - FLAM_C SINE Alu -30 113 2 1477 220 29 45 chr3 164752542 164753140 -53284018 - L1MEc LINE L1 -3677 2538 1969 249 357 0 0 chr3 164753158 164753242 -53283916 + L2 LINE L2 2989 3072 -200 301 257 140 15 chr3 164753547 164753683 -53283475 - MIR SINE MIR 0 262 110 1982 71 67 21 chr3 164754914 164755196 -53281962 - AluY SINE Alu -16 295 1 186 103 0 0 chr3 164756601 164756630 -53280528 + (TG)n Simple_repeat Simple_repeat 2 30 0 815 183 13 0 chr3 164756840 164756993 -53280165 + MER5A DNA MER1_type 35 189 0 215 234 39 26 chr3 164757169 164757246 -53279912 + MIR SINE MIR 74 151 -111 445 296 46 7 chr3 164757247 164757399 -53279759 - MIR SINE MIR -99 163 6 730 234 107 65 chr3 164757768 164758123 -53279035 + MER20B DNA MER1_type 163 532 -251 876 106 0 0 chr3 164758125 164758248 -53278910 - AluSg/x SINE Alu -4 305 183 327 247 32 0 chr3 164758311 164758404 -53278754 - MER5A DNA MER1_type -85 104 9 492 207 153 30 chr3 164758413 164758616 -53278542 + MER20B DNA MER1_type 548 775 -8 1198 253 96 33 chr3 164758738 164759484 -53277674 - L2 LINE L2 0 3313 2530 2330 107 7 0 chr3 164761188 164761498 -53275660 - AluSx SINE Alu 0 312 1 685 141 148 13 chr3 164761726 164761875 -53275283 + MLT1G LTR MaLR 422 590 0 263 118 118 0 chr3 164762278 164762329 -53274829 + HAL1 LINE L1 1800 1856 -651 198 0 0 0 chr3 164762370 164762392 -53274766 + (A)n Simple_repeat Simple_repeat 1 22 0 2016 125 4 0 chr3 164762396 164762675 -53274483 + AluSq SINE Alu 1 280 -33 315 226 36 0 chr3 164762681 164762765 -53274393 - L1M4 LINE L1 -1423 4723 4637 22 35 0 0 chr3 164763474 164763503 -53273655 + AT_rich Low_complexity Low_complexity 1 29 0 440 222 17 0 chr3 164763901 164764018 -53273140 + (CATATA)n Simple_repeat Simple_repeat 2 120 0 281 307 0 0 chr3 164764026 164764114 -53273044 - L1MC4 LINE L1 -1340 6702 6615 261 233 47 23 chr3 164764075 164764161 -53272997 + L1MC4 LINE L1 6614 6701 -1341 * 243 85 0 128 chr3 164765508 164765555 -53271603 - MLT2D LTR ERVL -7 407 367 233 229 0 0 chr3 164765555 164765603 -53271555 + (TATATG)n Simple_repeat Simple_repeat 5 52 0 1976 174 25 27 chr3 164765629 164765792 -53271366 - MLT2D LTR ERVL -48 366 204 2212 108 3 3 chr3 164765792 164766087 -53271071 - AluSg SINE Alu -15 295 1 1976 174 25 27 chr3 164766087 164766290 -53270868 - MLT2D LTR ERVL -210 204 1 245 157 78 0 chr3 164767323 164767374 -53269784 + Charlie7 DNA MER1_type 41 95 -2517 1301 196 126 0 chr3 164767832 164768087 -53269071 - AluSx SINE Alu -23 289 3 2294 105 0 10 chr3 164768220 164768534 -53268624 - AluSx SINE Alu -1 311 1 198 314 70 0 chr3 164768603 164768689 -53268469 + MIR SINE MIR 72 163 -99 2372 97 3 3 chr3 164769377 164769687 -53267471 - AluSg SINE Alu 0 310 1 362 253 148 28 chr3 164769966 164770148 -53267010 - Charlie8 DNA MER1_type -2134 283 80 234 326 76 52 chr3 164771315 164771487 -53265671 + MIR SINE MIR 87 262 0 1280 178 8 13 chr3 164773102 164773338 -53263820 - MER46A DNA MER2_type -1 235 1 1369 124 134 59 chr3 164773813 164774103 -53263055 - AluJo SINE Alu 0 312 1 22 0 0 0 chr3 164774518 164774540 -53262618 + AT_rich Low_complexity Low_complexity 1 22 0 307 274 60 0 chr3 164775240 164775357 -53261801 + MIR SINE MIR 19 142 -120 184 316 0 0 chr3 164776066 164776123 -53261035 - L2 LINE L2 -31 3241 3185 372 268 214 6 chr3 164776440 164776608 -53260550 + MIR SINE MIR 4 206 -56 679 189 154 0 chr3 164776630 164776773 -53260385 - FRAM SINE Alu -19 157 1 4692 32 0 5 chr3 164777407 164777969 -53259189 - L1PA4 LINE L1 -3 6152 5594 269 274 39 20 chr3 164778219 164778321 -53258837 - MIR SINE MIR -150 112 9 560 257 90 0 chr3 164778994 164779138 -53258020 - MER58C DNA MER1_type -1 214 58 292 288 51 8 chr3 164779204 164779322 -53257836 - MIR SINE MIR -50 212 90 339 276 159 65 chr3 164779391 164779623 -53257535 - MIR SINE MIR -1 261 8 1545 172 0 78 chr3 164779681 164779989 -53257169 + AluJo SINE Alu 1 284 -28 32 0 0 0 chr3 164780003 164780035 -53257123 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr3 164780309 164780330 -53256828 + AT_rich Low_complexity Low_complexity 1 21 0 637 250 164 10 chr3 164780613 164780821 -53256337 + MIR SINE MIR 2 241 -21 350 344 66 69 chr3 164781444 164781778 -53255380 + L2 LINE L2 2921 3253 -19 200 239 23 80 chr3 164781788 164781876 -53255282 + L2 LINE L2 3148 3230 -42 241 186 31 113 chr3 164782442 164782486 -53254672 - L1MC4 LINE L1 -11 8031 7998 2206 102 0 19 chr3 164782486 164782799 -53254359 + AluSx SINE Alu 1 307 -5 241 186 31 113 chr3 164782799 164782851 -53254307 - L1MC4 LINE L1 -44 7998 7943 1575 253 178 44 chr3 164783221 164784519 -53252639 - L1MC4 LINE L1 -139 7763 6232 2464 71 0 0 chr3 164784522 164784817 -53252341 + AluSx SINE Alu 6 300 -12 21 0 0 0 chr3 164784864 164784885 -53252273 + AT_rich Low_complexity Low_complexity 1 21 0 635 95 44 73 chr3 164785226 164785363 -53251795 - L1MB3 LINE L1 -1 6182 6050 1872 124 25 0 chr3 164785422 164785696 -53251462 - AluSx SINE Alu -31 281 1 1725 151 82 14 chr3 164785979 164786344 -53250814 - MLT1B LTR MaLR 0 390 1 2005 139 6 22 chr3 164786646 164786963 -53250195 + AluSx SINE Alu 1 312 0 561 296 153 34 chr3 164786982 164787451 -53249707 + L1MC4a LINE L1 5522 6046 -1762 2039 114 29 26 chr3 164788414 164788721 -53248437 - AluSx SINE Alu -2 310 3 1750 176 20 3 chr3 164792758 164793053 -53244105 - AluJb SINE Alu -12 300 1 930 320 56 40 chr3 164794848 164795633 -53241525 + L2 LINE L2 2477 3279 -34 297 0 0 0 chr3 164796425 164796458 -53240700 + (TG)n Simple_repeat Simple_repeat 2 34 0 1574 190 10 0 chr3 164796478 164796767 -53240391 - AluJo SINE Alu -12 300 9 958 333 55 47 chr3 164796795 164797303 -53239855 + L2 LINE L2 2257 2768 -546 762 262 115 48 chr3 164797335 164797709 -53239449 + L2 LINE L2 2915 3313 0 215 250 16 0 chr3 164797724 164797788 -53239370 + (TATG)n Simple_repeat Simple_repeat 3 67 0 1732 184 0 25 chr3 164798026 164798346 -53238812 + AluJo SINE Alu 1 312 0 9181 145 40 20 chr3 164799035 164800168 -53236990 - Tigger1 DNA MER2_type -654 1764 581 2414 75 0 3 chr3 164800168 164800473 -53236685 - AluY SINE Alu -7 304 1 9181 145 40 20 chr3 164800473 164801067 -53236091 - Tigger1 DNA MER2_type -1837 581 1 1807 160 10 10 chr3 164801224 164801536 -53235622 - AluJo SINE Alu 0 312 1 193 271 57 0 chr3 164802294 164802364 -53234794 + MIR3 SINE MIR 134 207 -1 2330 112 0 0 chr3 164802693 164803005 -53234153 - AluSx SINE Alu 0 312 1 401 292 0 17 chr3 164803024 164803144 -53234014 + MER5B DNA MER1_type 56 173 -5 24 32 0 0 chr3 164803215 164803246 -53233912 + AT_rich Low_complexity Low_complexity 1 31 0 33 0 0 0 chr3 164806652 164806685 -53230473 + AT_rich Low_complexity Low_complexity 1 33 0 268 185 283 11 chr3 164807243 164807427 -53229731 + MER20B DNA MER1_type 539 772 -11 1588 136 70 0 chr3 164808544 164808846 -53228312 + MER33 DNA MER1_type 1 323 -1 204 344 11 43 chr3 164809373 164809466 -53227692 + MIR SINE MIR 43 132 -76 1034 228 120 6 chr3 164809471 164809804 -53227354 - L1MC4 LINE L1 -374 7668 7298 184 339 62 0 chr3 164811170 164811235 -53225923 - L2 LINE L2 -10 3262 3194 462 231 23 31 chr3 164812127 164812181 -53224977 + MIR SINE MIR 111 164 -98 1939 130 38 0 chr3 164812181 164812473 -53224685 - AluSx SINE Alu -9 303 1 462 231 23 31 chr3 164812473 164812548 -53224610 + MIR SINE MIR 164 239 -23 365 266 158 0 chr3 164812656 164812795 -53224363 - MIR SINE MIR -89 173 13 272 330 8 0 chr3 164813742 164813860 -53223298 - L1MC4a LINE L1 -600 7208 7090 22 0 0 0 chr3 164814011 164814033 -53223125 + AT_rich Low_complexity Low_complexity 1 22 0 2444 101 0 0 chr3 164814038 164814346 -53222812 + AluSc SINE Alu 1 308 -1 1161 235 49 6 chr3 164814356 164814705 -53222453 - L1MC4 LINE L1 -962 7080 6717 738 232 153 32 chr3 164815013 164815444 -53221714 - L1MC4a LINE L1 -1574 6234 5752 3469 149 155 115 chr3 164815470 164815991 -53221167 - L1MC3 LINE L1 -32 7753 7254 247 248 40 20 chr3 164815991 164816092 -53221066 - MLT1F1 LTR MaLR -430 137 35 3469 149 155 115 chr3 164816092 164816131 -53221027 - L1MC3 LINE L1 -531 7254 7218 309 51 0 0 chr3 164816131 164816170 -53220988 + (CCTA)n Simple_repeat Simple_repeat 4 42 0 3469 149 155 115 chr3 164816170 164816674 -53220484 - L1MC3 LINE L1 -567 7218 6541 563 259 95 39 chr3 164816765 164817070 -53220088 + HAL1 LINE L1 2186 2507 0 733 275 139 4 chr3 164817811 164818091 -53219067 + L2 LINE L2 2516 2833 -481 1914 117 0 84 chr3 164818352 164818527 -53218631 - AluSg SINE Alu -5 305 117 315 0 0 0 chr3 164818527 164818562 -53218596 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2315 71 0 0 chr3 164818562 164818845 -53218313 - AluY SINE Alu -27 284 2 1914 117 0 84 chr3 164818845 164819001 -53218157 - AluSg SINE Alu -191 119 1 209 339 16 0 chr3 164819257 164819319 -53217839 - L2 LINE L2 -206 3066 3004 22 0 0 0 chr3 164820498 164820520 -53216638 + AT_rich Low_complexity Low_complexity 1 22 0 655 281 63 18 chr3 164823290 164823511 -53213647 - MIR SINE MIR -19 243 13 211 304 14 0 chr3 164823512 164823581 -53213577 + MIR SINE MIR 184 253 -9 318 331 60 13 chr3 164823659 164823810 -53213348 + L2 LINE L2 2202 2359 -955 827 191 55 0 chr3 164823811 164823994 -53213164 + L1MD2 LINE L1 6163 6355 -4 266 351 30 22 chr3 164824382 164824516 -53212642 + MER5A DNA MER1_type 55 189 0 315 313 62 31 chr3 164825336 164825496 -53211662 - L1MC5 LINE L1 -16 7945 7781 3738 179 49 14 chr3 164825634 164826608 -53210550 - L1MB7 LINE L1 -3 6181 5176 6738 134 49 10 chr3 164827571 164828768 -53208390 - Tigger1 DNA MER2_type 0 2418 1175 597 75 0 0 chr3 164828923 164829003 -53208155 + MADE1 DNA Mariner 1 80 0 255 336 16 40 chr3 164829051 164829176 -53207982 + L2 LINE L2 3191 3312 -1 599 289 69 8 chr3 164829759 164830019 -53207139 - L1ME3 LINE L1 -309 5853 5578 2189 96 34 3 chr3 164830019 164830311 -53206847 - AluSg SINE Alu -9 301 1 293 267 109 24 chr3 164830599 164830764 -53206394 - Charlie8 DNA MER1_type -2233 184 87 193 203 135 27 chr3 164830995 164831069 -53206089 + L2 LINE L2 432 513 -2801 289 326 76 52 chr3 164831939 164832111 -53205047 + MIR SINE MIR 87 262 0 184 305 21 92 chr3 164832965 164833106 -53204052 - MIR SINE MIR -129 133 3 1254 183 8 8 chr3 164833727 164833962 -53203196 - MER46A DNA MER2_type -1 235 1 1341 125 135 59 chr3 164834440 164834728 -53202430 - AluJo SINE Alu -2 310 1 22 0 0 0 chr3 164835143 164835165 -53201993 + AT_rich Low_complexity Low_complexity 1 22 0 356 266 57 16 chr3 164835865 164835989 -53201169 + MIR SINE MIR 19 147 -115 202 316 0 0 chr3 164836691 164836748 -53200410 - L2 LINE L2 -31 3241 3185 372 268 214 6 chr3 164837065 164837233 -53199925 + MIR SINE MIR 4 206 -56 1284 203 80 18 chr3 164837255 164837531 -53199627 - AluJo SINE Alu -19 293 1 849 132 0 0 chr3 164837805 164837926 -53199232 + AluSg/x SINE Alu 189 309 0 631 251 58 37 chr3 164838354 164838545 -53198613 + MIR SINE MIR 64 258 -4 1836 143 31 7 chr3 164838796 164839082 -53198076 + AluSx SINE Alu 1 293 -19 643 168 0 128 chr3 164841158 164841307 -53195851 - FLAM_A SINE Alu -3 130 1 2151 137 7 0 chr3 164841315 164841622 -53195536 - AluSx SINE Alu -3 309 1 254 255 113 28 chr3 164842611 164842717 -53194441 + MIR SINE MIR 120 234 -28 878 208 0 22 chr3 164845432 164845610 -53191548 + FRAM SINE Alu 1 174 -2 710 315 96 54 chr3 164846012 164846688 -53190470 + L2 LINE L2 2585 3313 0 735 0 0 0 chr3 164847839 164847925 -53189233 + 5S rRNA rRNA 1 86 -35 2447 77 0 0 chr3 164849915 164850212 -53186946 - AluSq SINE Alu -16 297 1 2249 95 7 10 chr3 164851367 164851672 -53185486 + AluSp SINE Alu 3 306 -7 2370 99 0 3 chr3 164853696 164854009 -53183149 - AluSq SINE Alu 0 313 2 2338 65 3 0 chr3 164854626 164854918 -53182240 + AluY SINE Alu 1 293 -18 198 0 0 0 chr3 164854995 164855017 -53182141 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 318 207 0 12 chr3 164855357 164855439 -53181719 + L1MC5 LINE L1 7704 7784 -177 838 173 22 5 chr3 164855458 164855643 -53181515 + L1MD3 LINE L1 7807 7994 -1 1679 146 60 0 chr3 164856898 164857191 -53179967 - AluSq SINE Alu 0 309 1 22 0 0 0 chr3 164857801 164857823 -53179335 + AT_rich Low_complexity Low_complexity 1 22 0 183 42 0 0 chr3 164858076 164858100 -53179058 + (T)n Simple_repeat Simple_repeat 1 24 0 204 156 22 0 chr3 164859704 164859749 -53177409 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 852 297 50 0 chr3 164860511 164860733 -53176425 - MIR SINE MIR -17 245 13 226 231 0 46 chr3 164860800 164860865 -53176293 - MIR SINE MIR -8 254 193 207 0 0 0 chr3 164860967 164860990 -53176168 + (TC)n Simple_repeat Simple_repeat 1 23 0 260 303 70 28 chr3 164861178 164861320 -53175838 - MIR3 SINE MIR -1 207 60 2240 87 14 0 chr3 164862132 164862419 -53174739 + AluSx SINE Alu 1 291 -21 276 280 103 9 chr3 164865366 164865473 -53171685 - MIR SINE MIR -69 193 77 189 0 0 0 chr3 164865814 164865835 -53171323 + (T)n Simple_repeat Simple_repeat 1 21 0 2558 72 0 0 chr3 164866385 164866692 -53170466 - AluY SINE Alu -4 307 1 870 231 12 0 chr3 164866797 164866970 -53170188 - FAM SINE Alu 0 175 1 2038 110 38 0 chr3 164868155 164868447 -53168711 + AluSq SINE Alu 1 303 -10 219 133 0 0 chr3 164871665 164871710 -53165448 + (T)n Simple_repeat Simple_repeat 1 45 0 1770 175 10 3 chr3 164871951 164872243 -53164915 - AluJb SINE Alu -14 298 5 25 75 0 0 chr3 164873329 164873382 -53163776 + AT_rich Low_complexity Low_complexity 1 53 0 426 285 46 7 chr3 164874787 164874938 -53162220 + CT-rich Low_complexity Low_complexity 3 159 0 1302 176 51 16 chr3 164875538 164875851 -53161307 + MER33 DNA MER1_type 1 324 0 452 326 97 80 chr3 164876104 164876515 -53160643 + L2 LINE L2 2855 3272 0 201 316 92 0 chr3 164876591 164876667 -53160491 + L2 LINE L2 3152 3234 -38 2319 103 0 6 chr3 164878889 164879201 -53157957 + AluSg SINE Alu 1 310 0 989 220 30 0 chr3 164880323 164880523 -53156635 - MER20 DNA MER1_type -11 208 3 209 345 36 36 chr3 164880674 164880758 -53156400 - MER5A DNA MER1_type -1 188 105 2223 133 51 23 chr3 164880764 164881118 -53156040 + THE1B LTR MaLR 1 364 0 12158 95 14 1 chr3 164881118 164882678 -53154480 + THE1B-int LTR MaLR 1 1580 0 2197 142 72 20 chr3 164882678 164883024 -53154134 + THE1B LTR MaLR 1 364 0 184 100 0 17 chr3 164883031 164883067 -53154091 - MER5A DNA MER1_type -151 38 4 4288 153 14 14 chr3 164883458 164884158 -53153000 + L1PA16 LINE L1 5466 6165 -1 260 132 0 0 chr3 164884211 164884249 -53152909 + L1PA11 LINE L1 5898 5935 -239 189 224 60 15 chr3 164885072 164885139 -53152019 + L2 LINE L2 1932 2001 -1313 23 0 0 0 chr3 164885288 164885311 -53151847 + AT_rich Low_complexity Low_complexity 1 23 0 1808 84 0 9 chr3 164885859 164886085 -53151073 + AluSg/x SINE Alu 81 304 -8 558 221 63 8 chr3 164886625 164886752 -53150406 + MER94 DNA DNA 1 134 0 1677 210 0 3 chr3 164887558 164887863 -53149295 - AluJo SINE Alu -8 304 1 473 163 158 141 chr3 164888763 164888898 -53148260 + MER5A DNA MER1_type 3 144 -45 1779 158 0 14 chr3 164888898 164889241 -53147917 - AluSx SINE Alu 0 339 1 473 163 158 141 chr3 164889241 164889288 -53147870 + MER5A DNA MER1_type 144 189 0 607 305 57 14 chr3 164889971 164890181 -53146977 - MIR SINE MIR 0 262 44 492 304 137 26 chr3 164890926 164891153 -53146005 + MIR SINE MIR 3 254 -8 308 321 66 0 chr3 164891226 164891363 -53145795 - L1MC4a LINE L1 -1932 5876 5731 464 253 106 41 chr3 164891893 164891986 -53145172 + L2 LINE L2 2644 2729 -585 201 74 0 0 chr3 164891986 164892013 -53145145 + (TG)n Simple_repeat Simple_repeat 1 27 0 464 253 106 41 chr3 164892013 164892164 -53144994 + L2 LINE L2 2729 2904 -410 258 274 14 14 chr3 164892342 164892415 -53144743 + L2 LINE L2 3231 3303 -10 21 0 0 0 chr3 164893690 164893711 -53143447 + AT_rich Low_complexity Low_complexity 1 21 0 338 244 31 63 chr3 164896013 164896140 -53141018 + L1M4 LINE L1 4987 5109 -1037 2056 96 37 0 chr3 164896348 164896618 -53140540 + AluSp SINE Alu 1 280 -33 396 0 0 0 chr3 164896618 164896662 -53140496 + (CA)n Simple_repeat Simple_repeat 1 44 0 302 321 0 15 chr3 164897213 164897347 -53139811 + GA-rich Low_complexity Low_complexity 1 132 0 1304 71 12 6 chr3 164897761 164897931 -53139227 - AluSq SINE Alu -142 171 1 530 270 132 16 chr3 164897931 164898334 -53138824 - L1MC4a LINE L1 -594 5584 5138 2407 90 0 0 chr3 164898416 164898726 -53138432 - AluSx SINE Alu -2 310 1 4409 207 160 17 chr3 164898731 164899998 -53137160 + Charlie1a DNA MER1_type 1 1449 -6 21 0 0 0 chr3 164900157 164900178 -53136980 + AT_rich Low_complexity Low_complexity 1 21 0 309 325 84 32 chr3 164901118 164901272 -53135886 + MIR3 SINE MIR 20 181 -27 231 170 0 0 chr3 164901503 164901550 -53135608 + MER116 DNA Mariner 15 61 -19 237 169 17 17 chr3 164901913 164901972 -53135186 - L1MC4 LINE L1 -1326 6716 6658 43361 38 25 0 chr3 164902052 164908055 -53129103 + L1PA4 LINE L1 2 6155 0 260 184 97 58 chr3 164909487 164909590 -53127568 - MLT1A1 LTR MaLR -258 107 1 184 351 74 14 chr3 164910162 164910310 -53126848 - L2 LINE L2 -219 3053 2897 265 325 50 8 chr3 164910371 164910491 -53126667 - MIR3 SINE MIR -69 139 15 597 221 61 22 chr3 164911772 164911953 -53125205 - MER20 DNA MER1_type 0 219 32 226 208 9 142 chr3 164912231 164912337 -53124821 + MIR SINE MIR 98 189 -73 1262 88 6 0 chr3 164913281 164913452 -53123706 - AluSg/x SINE Alu -7 303 132 2306 65 45 0 chr3 164913452 164913742 -53123416 - AluY SINE Alu -7 304 2 2321 87 0 16 chr3 164913940 164914252 -53122906 - AluY SINE Alu -4 307 1 2113 261 110 30 chr3 164914802 164915886 -53121272 + L1MC4 LINE L1 6732 7902 -140 210 304 0 49 chr3 164915895 164915997 -53121161 + (TATG)n Simple_repeat Simple_repeat 4 100 0 1071 126 6 0 chr3 164916219 164916378 -53120780 - L1PA14 LINE L1 -554 5607 5448 3505 127 32 4 chr3 164916378 164916902 -53120256 + L1PA14 LINE L1 5602 6143 -18 248 278 62 21 chr3 164916960 164917057 -53120101 - L2 LINE L2 -14 3299 3199 318 160 40 13 chr3 164917236 164917311 -53119847 - AluS SINE Alu -223 77 1 522 294 21 7 chr3 164917367 164917510 -53119648 - MIR SINE MIR -115 147 3 208 297 171 27 chr3 164918569 164918680 -53118478 + L2 LINE L2 3187 3313 0 516 213 74 16 chr3 164919802 164919924 -53117234 + MER94 DNA DNA 4 132 -2 863 183 53 0 chr3 164919925 164920094 -53117064 - MER5A DNA MER1_type -11 178 1 1965 133 0 29 chr3 164920657 164920972 -53116186 - AluSg SINE Alu -4 306 1 249 330 0 41 chr3 164923131 164923228 -53113930 - L2 LINE L2 -28 3285 3193 394 200 53 113 chr3 164924075 164924225 -53112933 - MIR SINE MIR -17 245 105 231 274 204 18 chr3 164924602 164924715 -53112443 - MIR SINE MIR -88 174 41 1972 121 0 71 chr3 164924880 164925203 -53111955 + AluSg SINE Alu 6 305 -5 245 236 217 28 chr3 164925946 164926052 -53111106 - L1MC/D LINE L1 -1946 5862 5737 184 30 61 0 chr3 164926120 164926153 -53111005 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1077 208 98 0 chr3 164928060 164928305 -53108853 + MLT1A1 LTR MaLR 95 363 -2 397 237 68 8 chr3 164929010 164929128 -53108030 - MER94 DNA DNA -9 125 1 348 250 125 0 chr3 164929288 164929408 -53107750 + MIR SINE MIR 125 259 -3 395 280 206 18 chr3 164929847 164930065 -53107093 + MIR SINE MIR 3 261 -1 818 256 166 50 chr3 164930397 164930971 -53106187 + MER20B DNA MER1_type 5 644 -139 3143 192 79 9 chr3 164930986 164931731 -53105427 + Tigger6a DNA MER2_type 1 797 -286 2054 115 16 40 chr3 164932175 164932479 -53104679 - AluSg SINE Alu -13 297 1 21 36 0 0 chr3 164932627 164932655 -53104503 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr3 164932830 164932872 -53104286 + AT_rich Low_complexity Low_complexity 1 42 0 336 298 111 48 chr3 164934121 164934329 -53102829 + MIR SINE MIR 34 254 -8 650 241 114 49 chr3 164935707 164935952 -53101206 + MIR SINE MIR 1 261 -1 288 172 0 0 chr3 164936940 164936998 -53100160 + T-rich Low_complexity Low_complexity 1 58 0 220 333 108 38 chr3 164939034 164939247 -53097911 + L2 LINE L2 1706 1933 -1381 1179 189 63 14 chr3 164939276 164939561 -53097597 - L1MB3 LINE L1 -1 6182 5884 2496 231 75 45 chr3 164939972 164940872 -53096286 + L1ME2 LINE L1 5222 6155 -9 254 294 35 0 chr3 164941675 164941760 -53095398 - MIR SINE MIR -76 186 99 1166 148 119 0 chr3 164941778 164941988 -53095170 + MER46A DNA MER2_type 1 235 -1 1681 107 11 57 chr3 164942092 164942355 -53094803 - AluSg SINE Alu -6 304 54 203 175 0 0 chr3 164943072 164943112 -53094046 + T-rich Low_complexity Low_complexity 1 40 0 250 160 0 0 chr3 164943299 164943349 -53093809 - HAL1 LINE L1 -213 2294 2245 244 312 46 37 chr3 164945137 164945246 -53091912 + MIR SINE MIR 32 141 -67 715 323 19 0 chr3 164945294 164945563 -53091595 - L1ME3A LINE L1 -335 5835 5562 1535 68 0 0 chr3 164945812 164946002 -53091156 - AluY SINE Alu -11 300 111 1271 90 0 0 chr3 164946126 164946282 -53090876 - AluSg/x SINE Alu -8 304 149 196 313 175 50 chr3 164946590 164946887 -53090271 + L2 LINE L2 2638 2971 -343 202 273 0 0 chr3 164947312 164947356 -53089802 + (TCCA)n Simple_repeat Simple_repeat 1 44 0 675 139 90 0 chr3 164947427 164947549 -53089609 - MER85 DNA T2_type -3 136 4 315 0 0 0 chr3 164948852 164948887 -53088271 + (TG)n Simple_repeat Simple_repeat 2 36 0 1574 190 10 0 chr3 164948907 164949196 -53087962 - AluJo SINE Alu -12 300 9 209 227 15 61 chr3 164949232 164949298 -53087860 + L2 LINE L2 2273 2335 -979 1466 145 5 5 chr3 164949981 164950195 -53086963 + AluJo SINE Alu 3 216 -96 245 260 31 31 chr3 164950318 164950445 -53086713 - AluJb SINE Alu -42 260 134 1897 117 60 7 chr3 164951970 164952252 -53084906 - AluSg SINE Alu -13 297 1 1760 71 5 0 chr3 164952260 164952472 -53084686 - AluSp SINE Alu -19 294 82 504 137 0 0 chr3 164953258 164953360 -53083798 + (CA)n Simple_repeat Simple_repeat 2 103 0 926 273 119 26 chr3 164955987 164956408 -53080750 + LTR16B LTR ERVL 1 460 -4 21 36 0 0 chr3 164957401 164957429 -53079729 + AT_rich Low_complexity Low_complexity 1 28 0 183 80 0 0 chr3 164957538 164957563 -53079595 + (TA)n Simple_repeat Simple_repeat 2 26 0 679 180 73 22 chr3 164958455 164958633 -53078525 - MER3 DNA MER1_type -22 187 1 413 120 0 27 chr3 164959002 164959077 -53078081 + (TTTTC)n Simple_repeat Simple_repeat 2 74 0 269 293 24 0 chr3 164959078 164959160 -53077998 + CT-rich Low_complexity Low_complexity 3 86 0 1178 145 0 6 chr3 164959164 164959343 -53077815 - AluSg/x SINE Alu -12 298 121 2373 222 65 8 chr3 164961174 164961921 -53075237 + L1MB7 LINE L1 5211 6005 -179 225 324 165 22 chr3 164962470 164962652 -53074506 - L2 LINE L2 -18 3254 3047 600 304 60 76 chr3 164962955 164963164 -53073994 - L2 LINE L2 -943 2371 2160 2206 125 0 0 chr3 164963164 164963469 -53073689 + AluSx SINE Alu 1 305 -7 600 304 60 76 chr3 164963469 164963940 -53073218 - L2 LINE L2 -1154 2160 1702 2139 85 28 0 chr3 164963978 164964261 -53072897 + AluSx SINE Alu 1 291 -21 350 278 48 16 chr3 164965202 164965328 -53071830 - MIR SINE MIR -77 185 56 270 243 0 14 chr3 164965533 164965607 -53071551 + Charlie8 DNA MER1_type 87 159 -2258 477 0 0 0 chr3 164967217 164967270 -53069888 + (TG)n Simple_repeat Simple_repeat 2 54 0 180 306 0 0 chr3 164967298 164967334 -53069824 + L2 LINE L2 3151 3186 -86 296 307 74 22 chr3 164967366 164967510 -53069648 - MIR SINE MIR -67 141 1 293 299 21 47 chr3 164967588 164967759 -53069399 + MIR SINE MIR 45 207 -55 1794 162 0 37 chr3 164969160 164969456 -53067702 - AluJb SINE Alu -26 286 2 271 279 92 64 chr3 164970195 164970478 -53066680 + L2 LINE L2 2593 2883 -431 185 347 21 42 chr3 164970554 164970649 -53066509 + L2 LINE L2 3004 3096 -176 517 263 48 97 chr3 164970983 164971238 -53065920 + MIR SINE MIR 3 250 -12 536 324 51 0 chr3 164971462 164971638 -53065520 + MIR SINE MIR 8 192 -70 241 338 0 0 chr3 164971665 164971733 -53065425 + MER5A DNA MER1_type 119 186 -3 180 111 0 0 chr3 164974697 164974724 -53062434 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 587 311 86 5 chr3 164976995 164977204 -53059954 + MIR SINE MIR 29 254 -8 599 330 10 10 chr3 164978298 164978501 -53058657 + MIR SINE MIR 35 237 -25 394 291 162 17 chr3 164978716 164978895 -53058263 - MIR SINE MIR -42 220 16 216 259 0 0 chr3 164979602 164979656 -53057502 + (CATATA)n Simple_repeat Simple_repeat 4 57 0 5097 116 3 1 chr3 164979701 164980452 -53056706 - L1PA15 LINE L1 -3 6162 5411 374 285 53 73 chr3 164980488 164980734 -53056424 - L1MC/D LINE L1 -2020 5788 5548 2195 118 0 0 chr3 164980760 164981056 -53056102 + AluSg1 SINE Alu 1 296 -13 22 0 0 0 chr3 164981097 164981119 -53056039 + AT_rich Low_complexity Low_complexity 1 22 0 207 100 0 0 chr3 164981140 164981170 -53055988 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 2102 109 20 7 chr3 164981456 164981760 -53055398 - AluSx SINE Alu -2 310 3 968 195 80 13 chr3 164981772 164981998 -53055160 - MER58B DNA MER1_type -14 327 87 1468 161 75 0 chr3 164981998 164982278 -53054880 - L1MA4 LINE L1 -40 6260 5960 226 182 0 0 chr3 164982275 164982319 -53054839 + L1MA3 LINE L1 6262 6305 0 * 471 202 0 32 chr3 164982320 164982414 -53054744 - MER58B DNA MER1_type -250 91 1 269 352 0 0 chr3 164983039 164983127 -53054031 + MIR3 SINE MIR 113 200 -8 22 0 0 0 chr3 164987411 164987433 -53049725 + AT_rich Low_complexity Low_complexity 1 22 0 5610 37 3 3 chr3 164988542 164989217 -53047941 - L1PA3 LINE L1 -3 6152 5478 601 230 67 6 chr3 164989383 164989561 -53047597 + MER5A DNA MER1_type 1 189 0 295 255 39 49 chr3 164989834 164989936 -53047222 - MIR SINE MIR -60 202 102 2298 112 3 0 chr3 164992467 164992779 -53044379 - AluSq SINE Alu 0 313 1 24 109 0 0 chr3 164993869 164993970 -53043188 + AT_rich Low_complexity Low_complexity 1 101 0 216 341 48 24 chr3 164994317 164994443 -53042715 - L2 LINE L2 -63 3250 3122 405 319 81 11 chr3 164994716 164994901 -53042257 - MIR SINE MIR -46 216 19 184 355 103 37 chr3 164995024 164995131 -53042027 + L2 LINE L2 3194 3307 -6 264 59 0 0 chr3 164995303 164995337 -53041821 + (A)n Simple_repeat Simple_repeat 1 34 0 674 171 17 0 chr3 164996425 164996542 -53040616 - FLAM_C SINE Alu -20 123 5 33 0 0 0 chr3 164997374 164997407 -53039751 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr3 164997903 164997926 -53039232 + AT_rich Low_complexity Low_complexity 1 23 0 1827 144 42 23 chr3 164998932 164999285 -53037873 - MER46B DNA MER2_type 0 236 2 2787 7 0 0 chr3 165000821 165001129 -53036029 + AluYa5 SINE Alu 1 308 -3 21 0 0 0 chr3 165001422 165001443 -53035715 + AT_rich Low_complexity Low_complexity 1 21 0 1136 251 109 36 chr3 165001577 165002016 -53035142 + L1ME3A LINE L1 5694 6164 -6 1729 171 26 10 chr3 165003079 165003384 -53033774 + AluJo SINE Alu 1 310 -2 194 128 43 0 chr3 165003580 165003627 -53033531 + T-rich Low_complexity Low_complexity 5 53 0 21 36 0 0 chr3 165004034 165004062 -53033096 + AT_rich Low_complexity Low_complexity 1 28 0 200 200 0 0 chr3 165004534 165004569 -53032589 + CT-rich Low_complexity Low_complexity 2 36 0 221 258 17 121 chr3 165005266 165005399 -53031759 - MIR SINE MIR -64 144 65 299 239 0 0 chr3 165005458 165005529 -53031629 - MER112 DNA MER1_type -12 248 178 299 237 10 52 chr3 165005667 165005764 -53031394 - MER112 DNA MER1_type -134 126 34 1814 169 37 6 chr3 165005893 165006243 -53030915 - L1PA16 LINE L1 -5 6161 5801 560 337 21 0 chr3 165006505 165006692 -53030466 + MIR3 SINE MIR 18 208 0 24 0 0 0 chr3 165008562 165008586 -53028572 + AT_rich Low_complexity Low_complexity 1 24 0 797 307 186 1 chr3 165008997 165009697 -53027461 + L2 LINE L2 2467 3307 -6 206 310 46 0 chr3 165010428 165010515 -53026643 - MIR SINE MIR -8 254 164 195 160 0 80 chr3 165010744 165010794 -53026364 + MER5A DNA MER1_type 116 161 -28 355 250 19 46 chr3 165011375 165011483 -53025675 + L2 LINE L2 3171 3275 -38 23 54 0 0 chr3 165012409 165012446 -53024712 + AT_rich Low_complexity Low_complexity 1 37 0 268 275 117 8 chr3 165013840 165013960 -53023198 + MIR SINE MIR 102 234 -28 22 0 0 0 chr3 165015003 165015025 -53022133 + AT_rich Low_complexity Low_complexity 1 22 0 1317 68 0 0 chr3 165015547 165015724 -53021434 + (CATTT)n Simple_repeat Simple_repeat 4 180 0 2133 123 0 3 chr3 165015724 165016017 -53021141 - AluSg SINE Alu -14 296 5 241 342 53 9 chr3 165017651 165017765 -53019393 + L2 LINE L2 3195 3313 0 251 53 0 26 chr3 165018092 165018130 -53019028 + (TTTTC)n Simple_repeat Simple_repeat 4 40 0 653 248 108 50 chr3 165019838 165020161 -53016997 - L1MC4 LINE L1 -2 8040 7699 * 2156 252 98 54 chr3 165020129 165021137 -53016021 - L1MC4a LINE L1 -342 7466 6414 2130 101 0 0 chr3 165021230 165021535 -53015623 + AluSx SINE Alu 5 309 0 469 235 221 42 chr3 165021535 165021820 -53015338 - L1MC4a LINE L1 -1395 6413 6078 608 187 32 96 chr3 165022046 165022233 -53014925 - MER5B DNA MER1_type -3 175 1 196 250 78 47 chr3 165022233 165022297 -53014861 + MIR SINE MIR 9 74 -188 321 265 101 58 chr3 165022364 165022553 -53014605 + L1ME LINE L1 5539 5735 -386 22 0 0 0 chr3 165024442 165024464 -53012694 + AT_rich Low_complexity Low_complexity 1 22 0 304 326 41 0 chr3 165025320 165025418 -53011740 + MER5B DNA MER1_type 1 102 -76 204 140 60 0 chr3 165025438 165025488 -53011670 + T-rich Low_complexity Low_complexity 1 53 0 703 319 33 4 chr3 165025804 165026045 -53011113 - MIR SINE MIR -1 261 14 21 0 0 0 chr3 165026701 165026722 -53010436 + AT_rich Low_complexity Low_complexity 1 21 0 2311 93 0 0 chr3 165027275 165027576 -53009582 + AluSq SINE Alu 1 301 -12 189 296 56 0 chr3 165028270 165028324 -53008834 + L2 LINE L2 2672 2728 -586 660 297 184 13 chr3 165028363 165028743 -53008415 + L2 LINE L2 2806 3250 -63 2239 104 0 29 chr3 165030699 165031007 -53006151 - AluSx SINE Alu -13 299 1 1396 175 108 11 chr3 165032310 165032578 -53004580 + AluJb SINE Alu 1 294 -18 2186 104 7 16 chr3 165032622 165032929 -53004229 - AluSq SINE Alu -9 304 1 419 320 23 8 chr3 165037755 165037883 -52999275 + L2 LINE L2 3180 3309 -4 377 320 26 31 chr3 165038116 165038344 -52998814 - L2 LINE L2 -722 2592 2366 2363 99 7 0 chr3 165038934 165039238 -52997920 + AluSp SINE Alu 1 306 -7 343 366 127 26 chr3 165039442 165039789 -52997369 + L2 LINE L2 2844 3225 -47 1526 284 58 7 chr3 165039877 165040450 -52996708 + HsTC2 DNA Tc2 29 630 -1268 1425 126 56 0 chr3 165040537 165040768 -52996390 - Tigger3(Golem) DNA MER2_type -5 3024 2781 555 275 0 7 chr3 165040765 165040907 -52996251 - Tigger3(Golem) DNA MER2_type -2887 142 2 * 251 234 0 52 chr3 165040907 165040984 -52996174 + (TATATG)n Simple_repeat Simple_repeat 5 77 0 353 221 90 16 chr3 165041444 165041566 -52995592 - MER58B DNA MER1_type 0 341 211 2390 103 0 0 chr3 165042324 165042636 -52994522 - AluSx SINE Alu 0 312 1 566 225 52 38 chr3 165042636 165042903 -52994255 + L1MC5 LINE L1 7646 7916 -45 1605 170 37 96 chr3 165042988 165043042 -52994116 - L1MB7 LINE L1 -16 6168 6112 1797 131 41 45 chr3 165043042 165043332 -52993826 + AluSx SINE Alu 1 289 -23 1605 170 37 96 chr3 165043332 165043418 -52993740 - L1MB7 LINE L1 -72 6112 6022 2175 114 0 9 chr3 165043418 165043733 -52993425 - AluSp SINE Alu -1 312 1 1605 170 37 96 chr3 165043733 165044080 -52993078 - L1MB7 LINE L1 -162 6022 5709 201 418 0 22 chr3 165045646 165045780 -52991378 + L2 LINE L2 2851 2981 -291 627 239 73 69 chr3 165045863 165046110 -52991048 + MIR SINE MIR 13 260 -2 191 156 31 0 chr3 165046231 165046263 -52990895 + L2 LINE L2 3194 3226 -46 21 0 0 0 chr3 165046351 165046372 -52990786 + AT_rich Low_complexity Low_complexity 1 21 0 198 167 0 0 chr3 165046431 165046467 -52990691 + (TATG)n Simple_repeat Simple_repeat 4 39 0 407 225 65 30 chr3 165047418 165047587 -52989571 - L1ME4a LINE L1 -8 6113 5939 1536 206 67 32 chr3 165049801 165050276 -52986882 - L1MA9 LINE L1 -38 6274 5783 669 281 22 0 chr3 165050565 165050750 -52986408 + MER5A DNA MER1_type 1 189 0 533 286 45 50 chr3 165050772 165050971 -52986187 - MIR SINE MIR -50 212 15 208 156 67 0 chr3 165051079 165051124 -52986034 - L3 LINE CR1 -1 1576 1529 273 259 71 18 chr3 165051660 165051772 -52985386 - MIR SINE MIR -47 215 98 468 257 13 13 chr3 165051853 165052005 -52985153 - AluSp/q SINE Alu 0 313 162 22 0 0 0 chr3 165053879 165053901 -52983257 + AT_rich Low_complexity Low_complexity 1 22 0 1020 177 0 39 chr3 165054168 165054349 -52982809 + FAM SINE Alu 1 174 -1 2069 126 0 43 chr3 165054990 165055179 -52981979 - AluSx SINE Alu 0 312 141 2371 108 0 0 chr3 165055179 165055486 -52981672 - AluSg1 SINE Alu -2 307 1 2069 126 0 43 chr3 165055486 165055622 -52981536 - AluSx SINE Alu -171 141 1 22 0 0 0 chr3 165056991 165057013 -52980145 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 165059370 165059398 -52977760 + AT_rich Low_complexity Low_complexity 1 28 0 583 261 43 12 chr3 165059506 165059667 -52977491 + MIR SINE MIR 12 177 -85 208 381 52 0 chr3 165059673 165059770 -52977388 - L2 LINE L2 -2 3311 3210 358 343 48 5 chr3 165059897 165060104 -52977054 + L2 LINE L2 2916 3131 -182 1268 123 52 0 chr3 165060110 165060321 -52976837 + MER30 DNA MER1_type 9 230 0 566 259 53 12 chr3 165060326 165060496 -52976662 + L2 LINE L2 3137 3313 0 34 18 0 36 chr3 165060776 165060795 -52976363 + AT_rich Low_complexity Low_complexity 1 19 -35 2061 124 16 25 chr3 165060795 165061110 -52976048 + AluSx SINE Alu 1 312 0 34 18 0 36 chr3 165061110 165061146 -52976012 + AT_rich Low_complexity Low_complexity 19 54 0 1131 187 57 64 chr3 165061695 165062364 -52974794 - MER4A LTR ERV1 0 683 1 449 246 16 16 chr3 165064246 165064368 -52972790 - MIR SINE MIR 0 262 141 23 33 0 0 chr3 165064742 165064772 -52972386 + AT_rich Low_complexity Low_complexity 1 30 0 2090 123 19 13 chr3 165064960 165065268 -52971890 + AluSx SINE Alu 1 310 -2 730 273 67 45 chr3 165067329 165067659 -52969499 - MER44D DNA MER2_type 0 609 3 644 175 42 0 chr3 165068147 165068267 -52968891 - MER44D DNA MER2_type -214 395 1 670 198 18 42 chr3 165068331 165068498 -52968660 + MIR SINE MIR 99 261 -1 2200 116 0 0 chr3 165069042 165069345 -52967813 - AluSx SINE Alu -9 303 1 22 0 0 0 chr3 165069480 165069502 -52967656 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 165070123 165070145 -52967013 + AT_rich Low_complexity Low_complexity 1 22 0 397 267 123 55 chr3 165070308 165070600 -52966558 - L1ME3A LINE L1 -227 5935 5624 318 332 25 10 chr3 165070638 165070834 -52966324 - L1ME3A LINE L1 -628 5534 5336 213 121 0 0 chr3 165072223 165072256 -52964902 + (T)n Simple_repeat Simple_repeat 1 33 0 759 252 0 0 chr3 165074709 165074856 -52962302 + FRAM SINE Alu 1 147 -19 252 151 0 75 chr3 165075188 165075241 -52961917 - L2 LINE L2 -2 3311 3263 2056 148 3 3 chr3 165076008 165076319 -52960839 - AluJb SINE Alu -1 311 1 455 284 45 11 chr3 165077280 165077456 -52959702 + MIR SINE MIR 11 192 -70 1566 174 47 30 chr3 165078895 165079194 -52957964 + AluJb SINE Alu 1 304 -8 431 231 121 18 chr3 165079229 165079359 -52957799 + MIR SINE MIR 10 149 -63 904 189 23 60 chr3 165081267 165081403 -52955755 - MER3 DNA MER1_type 0 209 82 553 315 0 6 chr3 165081403 165081581 -52955577 + MER45A DNA AcHobo 1 177 -1 904 189 23 60 chr3 165081581 165081661 -52955497 - MER3 DNA MER1_type -127 82 1 603 292 94 17 chr3 165081864 165082097 -52955061 + MIR SINE MIR 2 252 -10 1929 93 97 7 chr3 165083092 165083370 -52953788 - AluSx SINE Alu -9 303 1 390 245 245 67 chr3 165083595 165083848 -52953310 + L1MEd LINE L1 330 627 -5492 216 243 27 27 chr3 165084064 165084138 -52953020 + MIR SINE MIR 140 213 -49 185 93 70 0 chr3 165085536 165085579 -52951579 + (CCCCAG)n Simple_repeat Simple_repeat 4 49 0 255 232 204 22 chr3 165086174 165086355 -52950803 + MER113 DNA MER1_type? 5 218 -303 1974 103 75 7 chr3 165086706 165086988 -52950170 - AluSx SINE Alu -11 301 1 253 250 120 0 chr3 165087154 165087246 -52949912 + L3 LINE CR1 1452 1554 -23 1906 223 116 27 chr3 165087260 165088088 -52949070 - L1MC4 LINE L1 -1 8041 7140 772 195 0 93 chr3 165088080 165088337 -52948821 - L1MA4 LINE L1 0 6300 6068 * 3473 45 18 11 chr3 165088409 165088850 -52948308 - MLT2A1 LTR ERVL 0 444 1 13278 65 11 0 chr3 165088850 165090603 -52946555 - HERVL-A1 LTR ERVL 0 5654 3883 2102 130 13 0 chr3 165090619 165090926 -52946232 - AluSx SINE Alu 0 312 2 32 0 0 0 chr3 165091087 165091119 -52946039 + AT_rich Low_complexity Low_complexity 1 32 0 2034 158 34 63 chr3 165091550 165092024 -52945134 - MLT1C LTR MaLR 0 467 8 23 0 0 0 chr3 165092314 165092337 -52944821 + AT_rich Low_complexity Low_complexity 1 23 0 1182 114 0 0 chr3 165092337 165092495 -52944663 - AluSg/x SINE Alu -26 286 129 266 51 77 0 chr3 165092495 165092534 -52944624 - L1PA7 LINE L1 -7 6165 6106 22 70 0 0 chr3 165092946 165092989 -52944169 + AT_rich Low_complexity Low_complexity 1 43 0 2148 86 4 7 chr3 165093643 165093952 -52943206 + AluY SINE Alu 2 309 0 216 219 244 0 chr3 165094271 165094353 -52942805 + L2 LINE L2 3206 3307 -6 744 199 0 15 chr3 165094712 165094848 -52942310 - FRAM SINE Alu -21 155 22 195 69 0 0 chr3 165094866 165094895 -52942263 + (TG)n Simple_repeat Simple_repeat 2 30 0 216 258 15 91 chr3 165095149 165095281 -52941877 - L2 LINE L2 -235 3037 2916 309 284 37 80 chr3 165095453 165095615 -52941543 - MER5A DNA MER1_type -3 186 32 1289 226 139 22 chr3 165095899 165096118 -52941040 - Charlie1b DNA MER1_type -2247 514 322 1860 171 3 7 chr3 165096118 165096422 -52940736 - AluJb SINE Alu -9 303 1 1289 226 139 22 chr3 165096422 165096662 -52940496 - Charlie1b DNA MER1_type -2439 322 1 875 136 91 0 chr3 165097029 165097205 -52939953 + L1MA7 LINE L1 5994 6185 -106 591 206 73 0 chr3 165097265 165097401 -52939757 + MER46C DNA MER2_type 68 213 -125 292 213 0 33 chr3 165097517 165097578 -52939580 + MIR SINE MIR 177 235 -27 324 351 63 0 chr3 165097839 165097950 -52939208 - L2 LINE L2 -22 3250 3133 631 138 18 187 chr3 165098024 165098249 -52938909 - MER53 DNA DNA 0 189 3 204 196 39 20 chr3 165098748 165098799 -52938359 + GA-rich Low_complexity Low_complexity 4 55 0 229 337 56 0 chr3 165098995 165099084 -52938074 + MER96 DNA MER1_type? 82 175 0 207 0 0 0 chr3 165100240 165100263 -52936895 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 225 308 0 64 chr3 165100416 165100494 -52936664 + MIR SINE MIR 21 93 -115 743 264 74 25 chr3 165101072 165101314 -52935844 - MIR SINE MIR -6 256 3 204 270 63 0 chr3 165101373 165101436 -52935722 - MER91C DNA MER1_type -26 114 48 24 0 0 0 chr3 165102481 165102505 -52934653 + AT_rich Low_complexity Low_complexity 1 24 0 225 94 0 0 chr3 165104362 165104394 -52932764 + (T)n Simple_repeat Simple_repeat 1 32 0 346 185 43 43 chr3 165107983 165108075 -52929083 - L1MA9 LINE L1 -5 6307 6216 233 169 0 15 chr3 165108081 165108146 -52929012 + (TA)n Simple_repeat Simple_repeat 1 64 0 249 188 73 62 chr3 165108148 165108244 -52928914 - L1MA9 LINE L1 -69 6243 6147 1991 153 7 3 chr3 165108634 165108929 -52928229 + AluSq SINE Alu 1 296 -17 1921 167 3 0 chr3 165109327 165109633 -52927525 - AluJb SINE Alu -5 307 1 280 320 13 0 chr3 165109823 165109898 -52927260 - MIR SINE MIR -57 151 76 595 231 59 24 chr3 165109961 165110130 -52927028 - MER5B DNA MER1_type -3 175 1 225 397 45 11 chr3 165110139 165110318 -52926840 + MER5A DNA MER1_type 5 189 0 337 230 309 14 chr3 165110318 165110457 -52926701 - MER5A DNA MER1_type -9 180 1 2296 91 0 0 chr3 165111083 165111370 -52925788 + AluY SINE Alu 1 287 -24 25 31 0 0 chr3 165111966 165111998 -52925160 + AT_rich Low_complexity Low_complexity 1 32 0 1408 91 0 0 chr3 165112360 165112536 -52924622 - AluSp SINE Alu 0 313 138 1013 63 8 0 chr3 165112536 165112662 -52924496 + AluSq/x SINE Alu 7 133 -180 190 335 250 0 chr3 165113885 165114049 -52923109 - L2 LINE L2 -666 2648 2444 2632 121 14 12 chr3 165114573 165114996 -52922162 + MER57B LTR ERV1 1 424 -10 363 44 0 0 chr3 165115892 165115937 -52921221 + (CA)n Simple_repeat Simple_repeat 2 46 0 197 229 33 49 chr3 165116527 165116588 -52920570 + L2 LINE L2 3244 3303 -10 1412 109 4 78 chr3 165116622 165116852 -52920306 + AluSg/x SINE Alu 89 301 -11 237 313 0 0 chr3 165117236 165117316 -52919842 - Charlie8 DNA MER1_type -3 2414 2335 21 0 0 0 chr3 165117927 165117948 -52919210 + AT_rich Low_complexity Low_complexity 1 21 0 188 159 0 23 chr3 165118434 165118478 -52918680 + (TA)n Simple_repeat Simple_repeat 2 44 0 2079 108 3 57 chr3 165118876 165119192 -52917966 + AluSg SINE Alu 1 299 -11 186 312 13 13 chr3 165119491 165119568 -52917590 + L2 LINE L2 3167 3243 -70 302 270 270 12 chr3 165119900 165120063 -52917095 + MIR SINE MIR 42 246 -16 191 320 10 20 chr3 165120038 165120138 -52917020 - MIR SINE MIR -55 207 109 * 247 306 10 41 chr3 165120221 165120319 -52916839 - MIR SINE MIR -161 101 7 287 200 75 0 chr3 165120611 165120691 -52916467 + MIR SINE MIR 117 202 -60 1718 108 0 0 chr3 165120695 165120917 -52916241 + AluSc SINE Alu 1 222 -87 1147 99 0 0 chr3 165120917 165121068 -52916090 + AluSc SINE Alu 143 293 -16 326 324 19 9 chr3 165121692 165121797 -52915361 - MIR3 SINE MIR -43 165 60 429 318 17 28 chr3 165121913 165122092 -52915066 - MIR3 SINE MIR -16 192 16 2304 106 0 3 chr3 165124570 165124881 -52912277 - AluSg SINE Alu 0 310 1 22 35 0 0 chr3 165124958 165124987 -52912171 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr3 165125259 165125282 -52911876 + AT_rich Low_complexity Low_complexity 1 23 0 189 107 0 0 chr3 165125476 165125504 -52911654 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 483 18 0 0 chr3 165126582 165126638 -52910520 + (TG)n Simple_repeat Simple_repeat 2 57 0 208 261 101 0 chr3 165128028 165128097 -52909061 + MIR SINE MIR 126 201 -61 2173 125 0 3 chr3 165331182 165331495 -52705663 - AluSx SINE Alu 0 312 1 243 0 0 0 chr3 165331606 165331633 -52705525 + (TG)n Simple_repeat Simple_repeat 2 28 0 1126 256 54 35 chr3 165333030 165333401 -52703757 - L1ME1 LINE L1 -5 6161 5784 238 177 16 16 chr3 165333620 165333682 -52703476 + GA-rich Low_complexity Low_complexity 3 64 0 644 75 43 0 chr3 165334456 165334550 -52702608 - HERV17 LTR ERV1 -546 7853 7756 341 23 0 0 chr3 165334544 165334587 -52702571 - HERV17 LTR ERV1 -5176 1720 1678 * 1992 93 12 68 chr3 165334594 165335303 -52701855 - HERV17 LTR ERV1 -7078 1548 703 * 29139 91 16 15 chr3 165335296 165340172 -52696986 - HERV17 LTR ERV1 -3445 4954 1 5466 89 50 43 chr3 165340172 165340992 -52696166 - LTR12 LTR ERV1 0 826 1 2457 193 47 5 chr3 165340992 165341662 -52695496 - L1P4 LINE L1 -720 5445 4747 1885 139 7 0 chr3 165341679 165341960 -52695198 - AluSq SINE Alu -30 283 1 1142 113 21 21 chr3 165341960 165342146 -52695012 + MER21A LTR ERV1 79 264 -667 1713 153 59 43 chr3 165342152 165342586 -52694572 + MER21A LTR ERV1 377 931 0 948 194 28 129 chr3 165342588 165342984 -52694174 + LOR1-int LTR ERV1 1474 1829 -4502 * 1367 164 19 19 chr3 165342967 165343230 -52693928 + LOR1-int LTR ERV1 2741 3003 -3328 * 1643 166 15 4 chr3 165343226 165343491 -52693667 + LOR1-int LTR ERV1 1037 1304 -5787 515 179 45 18 chr3 165343494 165343606 -52693552 + LOR1-int LTR ERV1 2982 3096 -3235 455 161 8 81 chr3 165343496 165343620 -52693538 + LTR57-int LTR ERVL 937 1051 -4292 * 393 243 89 33 chr3 165343616 165343830 -52693328 + LOR1-int LTR ERV1 1205 1430 -6690 * 4327 153 17 4 chr3 165343959 165344660 -52692498 - MER50 LTR ERV1 -24 710 1 7335 159 8 10 chr3 165345010 165346966 -52690192 - L1P4 LINE L1 -342 5819 3865 2335 95 0 3 chr3 165346974 165347278 -52689880 + AluY SINE Alu 1 303 -8 1329 174 24 34 chr3 165347342 165347640 -52689518 - LTR29 LTR ERV1 0 622 328 5970 136 20 31 chr3 165347777 165349094 -52688064 - L1 LINE L1 -3705 3860 2551 1129 169 6 6 chr3 165349625 165349808 -52687350 + AluSg/x SINE Alu 113 295 -17 352 217 43 11 chr3 165349817 165349909 -52687249 + L1MD2 LINE L1 6264 6358 -1 356 348 35 25 chr3 165349914 165350115 -52687043 - L2 LINE L2 -621 2693 2491 2045 122 28 0 chr3 165350129 165350415 -52686743 + AluSq SINE Alu 1 294 -19 1137 148 63 5 chr3 165350753 165350976 -52686182 + MER41B LTR ERV1 380 615 -20 329 307 39 7 chr3 165351676 165351829 -52685329 + L1MCc LINE L1 110 267 -6156 657 269 5 21 chr3 165352123 165352182 -52684976 + L1MCc LINE L1 269 327 -6096 768 221 53 66 chr3 165352182 165352408 -52684750 - MER58A DNA MER1_type 0 224 2 657 269 5 21 chr3 165352408 165352534 -52684624 + L1MCc LINE L1 327 451 -5972 1473 262 138 25 chr3 165352787 165353749 -52683409 + L1MCc LINE L1 821 1957 -4984 730 57 9 9 chr3 165353749 165353854 -52683304 + (GGAA)n Simple_repeat Simple_repeat 2 106 0 1473 262 138 25 chr3 165353854 165353992 -52683166 + L1MCc LINE L1 1957 2078 -4863 821 188 0 20 chr3 165353997 165354146 -52683012 + AluJo SINE Alu 3 148 -164 752 256 71 7 chr3 165354151 165354432 -52682726 + L1MCc LINE L1 2321 2619 -4503 21 57 0 0 chr3 165354870 165354905 -52682253 + AT_rich Low_complexity Low_complexity 1 35 0 2033 131 17 0 chr3 165355723 165356021 -52681137 + AluSx SINE Alu 1 303 -9 44 0 0 0 chr3 165356181 165356225 -52680933 + AT_rich Low_complexity Low_complexity 1 44 0 1178 229 39 15 chr3 165356255 165356587 -52680571 - L1ME3A LINE L1 -80 6159 5820 322 100 33 0 chr3 165356588 165356648 -52680510 + (TCTA)n Simple_repeat Simple_repeat 2 63 0 399 283 30 24 chr3 165356687 165356853 -52680305 - L1ME3A LINE L1 -2012 4203 4037 1460 287 85 27 chr3 165356970 165357397 -52679761 - L1MEc LINE L1 -2824 3391 2990 2159 66 0 0 chr3 165357397 165357670 -52679488 + L1PA5 LINE L1 5879 6151 -3 1460 287 85 27 chr3 165357670 165358438 -52678720 - L1MEc LINE L1 -3225 2990 2156 1224 269 103 2 chr3 165358463 165358860 -52678298 - LTR16A1 LTR ERVL -3 454 18 1372 158 91 0 chr3 165359010 165359307 -52677851 + MER33 DNA MER1_type 1 324 0 262 270 49 44 chr3 165359462 165359666 -52677492 - L1MEc LINE L1 -4574 1822 1618 1782 137 72 0 chr3 165359917 165360194 -52676964 - AluJb SINE Alu -15 297 1 2422 117 5 24 chr3 165361580 165361949 -52675209 + THE1B LTR MaLR 1 362 -2 403 271 77 48 chr3 165362583 165362790 -52674368 - L2 LINE L2 -7 3306 3094 285 329 48 71 chr3 165363811 165363966 -52673192 - MARNA DNA Mariner -176 410 264 1867 149 19 16 chr3 165363966 165364274 -52672884 - AluJo SINE Alu -3 309 1 285 329 48 71 chr3 165364274 165364413 -52672745 - MARNA DNA Mariner -322 264 123 316 91 30 0 chr3 165365328 165365394 -52671764 + (TA)n Simple_repeat Simple_repeat 2 69 0 202 279 58 58 chr3 165365638 165365724 -52671434 - L2 LINE L2 -219 3053 2968 22 35 0 0 chr3 165365940 165365969 -52671189 + AT_rich Low_complexity Low_complexity 1 29 0 562 259 96 12 chr3 165365989 165366155 -52671003 + MIR SINE MIR 8 187 -75 374 69 17 0 chr3 165366156 165366214 -52670944 + (CA)n Simple_repeat Simple_repeat 2 60 0 1634 249 30 39 chr3 165366232 165366670 -52670488 - LTR40c LTR ERVL -12 453 20 1598 173 67 7 chr3 165367063 165367346 -52669812 - AluJb SINE Alu -12 300 1 2372 41 41 3 chr3 165368266 165368556 -52668602 - AluY SINE Alu -10 301 1 1262 142 22 4 chr3 165368625 165368851 -52668307 + L1MA4 LINE L1 6063 6292 -8 2864 134 0 11 chr3 165368885 165369347 -52667811 + L1MA9 LINE L1 5329 5785 -527 292 196 22 51 chr3 165369366 165369504 -52667654 + (TATAA)n Simple_repeat Simple_repeat 1 134 0 2265 168 11 63 chr3 165369504 165370028 -52667130 + L1MA9 LINE L1 5782 6278 -34 215 103 26 0 chr3 165370406 165370445 -52666713 + (TG)n Simple_repeat Simple_repeat 2 41 0 229 353 53 38 chr3 165370864 165370997 -52666161 + MIR3 SINE MIR 43 177 -31 229 261 92 0 chr3 165371130 165371195 -52665963 - L2 LINE L2 -44 3228 3158 2300 84 0 0 chr3 165371579 165371865 -52665293 + AluSq SINE Alu 11 296 -17 369 0 0 0 chr3 165372005 165372046 -52665112 + (TG)n Simple_repeat Simple_repeat 1 41 0 1988 159 18 3 chr3 165372380 165372719 -52664439 + MER2 DNA MER2_type 1 344 0 199 258 76 0 chr3 165372823 165372889 -52664269 - L2 LINE L2 -16 3256 3186 991 220 120 17 chr3 165373447 165373797 -52663361 + MER58D DNA MER1_type 1 386 0 898 297 38 20 chr3 165374486 165374880 -52662278 - L1MC/D LINE L1 -2101 5707 5307 314 308 25 38 chr3 165376958 165377117 -52660041 + L2 LINE L2 2698 2854 -460 698 288 35 18 chr3 165377138 165377364 -52659794 + MIR SINE MIR 32 261 -1 951 212 40 83 chr3 165377488 165377790 -52659368 - MLT2B1 LTR ERVL 0 520 232 571 295 8 8 chr3 165377854 165377983 -52659175 + L2 LINE L2 3138 3266 -6 315 0 0 0 chr3 165378503 165378527 -52658631 + (CA)n Simple_repeat Simple_repeat 1 59 0 315 0 0 0 chr3 165378527 165378562 -52658596 + (CA)n Simple_repeat Simple_repeat 2 36 0 1939 219 25 3 chr3 165378691 165379242 -52657916 + MER82 DNA MER2_type 7 636 -17 313 340 21 43 chr3 165379575 165379716 -52657442 - MIR3 SINE MIR -66 142 5 933 202 22 0 chr3 165379780 165379963 -52657195 - MER5A DNA MER1_type -1 188 2 402 235 73 44 chr3 165380913 165381049 -52656109 + MIR3 SINE MIR 54 193 -15 23 33 0 0 chr3 165381316 165381346 -52655812 + AT_rich Low_complexity Low_complexity 1 30 0 2607 61 0 0 chr3 165381564 165381875 -52655283 + AluY SINE Alu 1 311 0 265 313 94 57 chr3 165382612 165382804 -52654354 - L2 LINE L2 -20 3293 3095 329 261 65 98 chr3 165382819 165383003 -52654155 - MER5B DNA MER1_type 0 178 1 606 238 62 154 chr3 165383010 165383352 -52653806 - L2 LINE L2 -263 3050 2729 349 89 36 0 chr3 165383352 165383396 -52653762 - L1PA15-16 LINE L1 -4371 2478 2430 3232 143 20 6 chr3 165383396 165383935 -52653223 + L1PA16 LINE L1 5611 6157 -9 349 89 36 0 chr3 165383935 165383946 -52653212 - L1PA15-16 LINE L1 -4419 2430 2421 606 238 62 154 chr3 165383946 165384153 -52653005 - L2 LINE L2 -584 2729 2505 1184 234 138 22 chr3 165384565 165384920 -52652238 - MSTD LTR MaLR 0 396 1 812 128 398 0 chr3 165386722 165386918 -52650240 + L1P4 LINE L1 5322 5595 -566 9067 21 6 0 chr3 165386919 165388766 -52648392 + L1PA4 LINE L1 4285 6152 -3 30 45 0 0 chr3 165389239 165389283 -52647875 + AT_rich Low_complexity Low_complexity 1 44 0 2421 70 3 22 chr3 165389884 165390200 -52646958 - AluSp SINE Alu -2 311 2 1225 161 16 0 chr3 165390718 165390911 -52646247 - MSTC LTR MaLR -1 427 232 672 278 6 6 chr3 165390914 165391083 -52646075 + MLT-int LTR MaLR 1286 1454 -281 233 143 0 20 chr3 165391083 165391132 -52646026 + (TCC)n Simple_repeat Simple_repeat 3 50 0 974 153 6 0 chr3 165391160 165391337 -52645821 + CT-rich Low_complexity Low_complexity 2 179 0 1325 210 50 4 chr3 165391355 165391636 -52645522 + MSTC-int LTR MaLR 1441 1734 -1 1099 176 98 37 chr3 165391637 165391881 -52645277 + MSTC LTR MaLR 1 259 -169 1351 212 53 14 chr3 165391934 165392292 -52644866 + MLT1A2 LTR MaLR 1 372 -2 2559 68 0 0 chr3 165392384 165392752 -52644406 + AluY SINE Alu 2 369 0 415 275 54 48 chr3 165392883 165393050 -52644108 + L1ME4a LINE L1 5665 5832 -289 485 208 26 83 chr3 165393060 165393252 -52643906 - L1MC5 LINE L1 -50 7911 7731 402 21 0 0 chr3 165393365 165393412 -52643746 + (TG)n Simple_repeat Simple_repeat 2 48 0 1567 191 27 73 chr3 165393574 165394023 -52643135 + MSTC LTR MaLR 1 428 0 1612 257 65 7 chr3 165394348 165394792 -52642366 - MER110 LTR ERV1 -21 470 1 22 35 0 0 chr3 165394878 165394907 -52642251 + AT_rich Low_complexity Low_complexity 1 29 0 740 190 0 0 chr3 165394907 165395023 -52642135 - FLAM_C SINE Alu -15 118 3 317 263 30 10 chr3 165396371 165396470 -52640688 + CT-rich Low_complexity Low_complexity 3 103 0 274 325 50 0 chr3 165396993 165397073 -52640085 + MIR3 SINE MIR 118 201 -7 303 253 53 32 chr3 165397078 165397173 -52639985 - MIR3 SINE MIR -44 164 68 2553 32 3 26 chr3 165397984 165398294 -52638864 - AluY SINE Alu -8 303 1 324 0 0 0 chr3 165398346 165398382 -52638776 + (CA)n Simple_repeat Simple_repeat 2 37 0 797 295 77 31 chr3 165398748 165399097 -52638061 - L2 LINE L2 -6 3307 2943 204 40 0 0 chr3 165399800 165399825 -52637333 + (CAA)n Simple_repeat Simple_repeat 2 26 0 1822 68 29 60 chr3 165399941 165400222 -52636936 - L1PA10 LINE L1 -11 6157 5886 614 49 0 0 chr3 165400223 165400304 -52636854 + L1P4 LINE L1 5648 5728 -440 207 350 0 0 chr3 165400921 165400981 -52636177 + MIR SINE MIR 45 104 -158 1302 155 23 76 chr3 165400985 165401249 -52635909 - AluJo SINE Alu -58 254 5 266 325 113 19 chr3 165401250 165401410 -52635748 + MIR SINE MIR 88 262 0 1461 150 29 4 chr3 165402096 165402364 -52634794 - AluJo SINE Alu 0 304 31 206 291 68 68 chr3 165402485 165402602 -52634556 - MIR SINE MIR -115 147 31 22 0 0 0 chr3 165402818 165402840 -52634318 + AT_rich Low_complexity Low_complexity 1 22 0 576 100 0 0 chr3 165403468 165403548 -52633610 - MADE1 DNA Mariner 0 80 1 1462 123 11 25 chr3 165404521 165404798 -52632360 + L1MA4 LINE L1 6025 6297 -3 275 335 139 76 chr3 165405555 165405871 -52631287 - L2 LINE L2 -1 3271 2936 306 242 81 86 chr3 165406056 165406242 -52630916 - MER5A DNA MER1_type -3 186 2 233 162 0 0 chr3 165407965 165408002 -52629156 - MER115 DNA AcHobo -656 37 1 421 258 219 6 chr3 165408002 165408180 -52628978 + MIR SINE MIR 44 259 -3 395 40 0 0 chr3 165408286 165408336 -52628822 - MADE1 DNA Mariner 0 80 31 195 42 0 0 chr3 165408441 165408465 -52628693 + (TA)n Simple_repeat Simple_repeat 2 25 0 2226 100 0 0 chr3 165408465 165408754 -52628404 - AluSq SINE Alu -24 289 1 687 208 24 182 chr3 165408754 165408935 -52628223 - L2 LINE L2 -10 3303 3212 339 113 0 0 chr3 165408935 165408988 -52628170 + (TG)n Simple_repeat Simple_repeat 2 54 0 687 208 24 182 chr3 165408988 165409186 -52627972 - L2 LINE L2 -101 3212 2984 1787 185 20 23 chr3 165409192 165409543 -52627615 - MLT1A1 LTR MaLR -12 353 4 805 294 22 13 chr3 165409560 165409788 -52627370 - L2 LINE L2 -337 2977 2748 1691 241 33 26 chr3 165409789 165410245 -52626913 + LTR40c LTR ERVL 1 459 -6 1385 264 66 36 chr3 165410262 165410761 -52626397 - L2 LINE L2 -562 2752 2239 650 255 11 27 chr3 165411456 165411644 -52625514 - MER5A DNA MER1_type -2 187 3 853 246 98 0 chr3 165411649 165411852 -52625306 + MIR SINE MIR 12 234 -28 222 91 0 0 chr3 165411859 165411892 -52625266 + (TA)n Simple_repeat Simple_repeat 2 34 0 234 179 85 113 chr3 165412057 165412163 -52624995 + LTR28 LTR ERV1 350 452 -568 414 0 0 0 chr3 165412188 165412234 -52624924 + (CA)n Simple_repeat Simple_repeat 2 47 0 201 132 0 0 chr3 165412234 165412272 -52624886 + (TC)n Simple_repeat Simple_repeat 1 38 0 205 358 117 27 chr3 165412701 165413103 -52624055 + L2 LINE L2 637 1074 -2240 577 246 0 0 chr3 165413823 165413933 -52623225 + MER81 DNA DNA 4 113 -1 21 0 0 0 chr3 165414085 165414106 -52623052 + AT_rich Low_complexity Low_complexity 1 21 0 2213 114 0 0 chr3 165415041 165415340 -52621818 - AluSq SINE Alu -14 299 1 952 167 21 84 chr3 165416242 165416481 -52620677 - MLT1A1 LTR MaLR -138 227 4 2151 121 0 25 chr3 165416919 165417233 -52619925 + AluSx SINE Alu 1 306 -6 2089 89 0 0 chr3 165417682 165417941 -52619217 - AluSg1 SINE Alu -16 293 35 280 327 50 20 chr3 165419210 165419412 -52617746 - L1ME LINE L1 -334 6222 6015 363 255 37 79 chr3 165419456 165419672 -52617486 - L1ME LINE L1 -2262 5940 5734 1020 270 102 27 chr3 165419856 165420260 -52616898 + L2 LINE L2 8 441 -2873 441 277 105 21 chr3 165420284 165420522 -52616636 - L1ME LINE L1 -1636 4904 4647 300 225 141 0 chr3 165420534 165420605 -52616553 - L1ME LINE L1 -6068 472 392 974 207 38 72 chr3 165420610 165420799 -52616359 - L1ME LINE L1 -6263 277 94 2127 116 0 3 chr3 165420799 165421119 -52616039 + AluSc SINE Alu 1 319 0 974 207 38 72 chr3 165421119 165421164 -52615994 - L1ME LINE L1 -6446 94 49 261 266 38 32 chr3 165421166 165421324 -52615834 - L1MEc LINE L1 -4002 2394 2236 630 282 79 48 chr3 165421616 165421731 -52615427 - HAL1b LINE L1 -534 814 704 1948 162 0 3 chr3 165421731 165422034 -52615124 + AluJo SINE Alu 1 302 -10 630 282 79 48 chr3 165422034 165422499 -52614659 - HAL1b LINE L1 -644 704 216 1914 146 41 12 chr3 165422517 165422859 -52614299 - L1PA16 LINE L1 -117 6049 5698 496 230 0 0 chr3 165422857 165422970 -52614188 + L1P LINE L1 4257 4369 -1777 * 820 288 107 46 chr3 165423337 165423812 -52613346 + L2 LINE L2 1975 2478 -836 2342 142 12 46 chr3 165423865 165424255 -52612903 + MLT2D LTR ERVL 1 378 -36 351 0 0 0 chr3 165424255 165424294 -52612864 + (CA)n Simple_repeat Simple_repeat 2 40 0 2342 142 12 46 chr3 165424294 165424320 -52612838 + MLT2D LTR ERVL 378 403 -11 260 333 0 21 chr3 165425115 165425208 -52611950 - MLT1K LTR MaLR -465 123 33 192 77 0 0 chr3 165425228 165425254 -52611904 + (CA)n Simple_repeat Simple_repeat 2 27 0 384 207 95 0 chr3 165425697 165425788 -52611370 - MER5A DNA MER1_type -84 105 4 860 78 0 26 chr3 165425844 165425960 -52611198 + AluSq/x SINE Alu 1 113 -199 504 212 127 0 chr3 165426478 165426596 -52610562 - FLAM_C SINE Alu -10 133 1 21 0 0 0 chr3 165426596 165426617 -52610541 + AT_rich Low_complexity Low_complexity 1 21 0 1641 135 111 0 chr3 165426623 165426876 -52610282 + AluSx SINE Alu 3 306 0 187 43 0 0 chr3 165426876 165426899 -52610259 + (TAA)n Simple_repeat Simple_repeat 1 180 0 2384 50 0 26 chr3 165427477 165427780 -52609378 - AluY SINE Alu -16 295 1 410 244 88 59 chr3 165428011 165428318 -52608840 - L1ME4a LINE L1 -202 5919 5604 360 0 0 0 chr3 165428606 165428646 -52608512 + (TG)n Simple_repeat Simple_repeat 1 40 0 2044 121 0 0 chr3 165428646 165428927 -52608231 - AluSx SINE Alu -31 281 1 333 243 0 0 chr3 165428929 165429032 -52608126 - L1ME4a LINE L1 -1617 4529 4427 1888 220 68 72 chr3 165429071 165429854 -52607304 - L1MC5 LINE L1 -557 7404 6625 24 0 0 0 chr3 165430915 165430939 -52606219 + AT_rich Low_complexity Low_complexity 1 24 0 219 88 0 0 chr3 165431912 165431946 -52605212 + (TG)n Simple_repeat Simple_repeat 1 34 0 2173 125 0 3 chr3 165435406 165435719 -52601439 - AluSx SINE Alu 0 312 1 243 0 0 0 chr3 165435830 165435857 -52601301 + (TG)n Simple_repeat Simple_repeat 2 28 0 1126 256 54 35 chr3 165437254 165437625 -52599533 - L1ME1 LINE L1 -5 6161 5784 238 177 16 16 chr3 165437844 165437906 -52599252 + GA-rich Low_complexity Low_complexity 3 64 0 644 75 43 0 chr3 165438680 165438774 -52598384 - HERV17 LTR ERV1 -546 7853 7756 341 23 0 0 chr3 165438768 165438811 -52598347 - HERV17 LTR ERV1 -5176 1720 1678 * 1992 93 12 68 chr3 165438818 165439527 -52597631 - HERV17 LTR ERV1 -7078 1548 703 * 29151 91 16 15 chr3 165439520 165444396 -52592762 - HERV17 LTR ERV1 -3445 4954 1 5466 89 50 43 chr3 165444396 165445216 -52591942 - LTR12 LTR ERV1 0 826 1 5856 201 30 34 chr3 165445216 165445903 -52591255 - L1P4 LINE L1 -720 5445 4756 2129 103 7 0 chr3 165445903 165446184 -52590974 - AluSp SINE Alu -30 283 1 5856 201 30 34 chr3 165446184 165447087 -52590071 - L1P4 LINE L1 -1409 4756 3865 2335 95 0 3 chr3 165447095 165447399 -52589759 + AluY SINE Alu 1 303 -8 248 159 0 0 chr3 165447399 165447443 -52589715 - LTR8A LTR ERV1 -683 44 1 2678 140 18 61 chr3 165447464 165447792 -52589366 - LTR29 LTR ERV1 0 622 322 2280 126 0 0 chr3 165447792 165448102 -52589056 - AluSx SINE Alu 0 312 3 2678 140 18 61 chr3 165448102 165448281 -52588877 - LTR29 LTR ERV1 -300 322 137 183 273 143 26 chr3 165448551 165448628 -52588530 + MIR SINE MIR 61 146 -116 1455 240 98 11 chr3 165449209 165449676 -52587482 - L1M4 LINE L1 -1121 5025 4518 2259 156 39 32 chr3 165449679 165449898 -52587260 - MER65A LTR ERV1 0 445 229 4850 87 22 16 chr3 165449898 165450585 -52586573 + LTR8 LTR ERV1 1 691 0 2259 156 39 32 chr3 165450585 165450800 -52586358 - MER65A LTR ERV1 -216 229 8 1774 98 0 0 chr3 165450805 165451029 -52586129 - AluJb SINE Alu -4 308 85 817 206 69 86 chr3 165451044 165451260 -52585898 - L1M4 LINE L1 -1624 4522 4314 1527 197 11 14 chr3 165451260 165451573 -52585585 - AluJb SINE Alu 0 317 6 817 206 69 86 chr3 165451573 165451787 -52585371 - L1M4 LINE L1 -1832 4314 4098 2339 100 7 0 chr3 165452164 165452463 -52584695 - AluSx SINE Alu -11 301 1 1781 178 0 10 chr3 165452640 165452944 -52584214 - AluJo SINE Alu -11 301 1 1087 213 49 78 chr3 165453337 165453527 -52583631 + LTR56 LTR ERV1 9 203 -242 2005 82 0 43 chr3 165453527 165453809 -52583349 + AluY SINE Alu 30 299 -12 1087 213 49 78 chr3 165453809 165454068 -52583090 + LTR56 LTR ERV1 203 445 0 576 42 0 0 chr3 165454449 165454520 -52582638 + (TG)n Simple_repeat Simple_repeat 2 72 0 218 54 0 27 chr3 165454782 165454819 -52582339 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 533 219 61 0 chr3 165455085 165455199 -52581959 + MER34B LTR ERV1 5 125 -440 10945 169 21 3 chr3 165455446 165458367 -52578791 + L1PA13 LINE L1 3237 6156 -7 526 200 10 0 chr3 165458433 165458533 -52578625 + LTR56-int LTR ERV1 1372 1472 -4859 215 132 38 19 chr3 165458548 165458601 -52578557 + (TA)n Simple_repeat Simple_repeat 1 54 0 1249 138 14 107 chr3 165458617 165458721 -52578437 + MER21A LTR ERV1 1 113 -818 1976 151 7 0 chr3 165458721 165459025 -52578133 - AluSx SINE Alu -6 306 1 1249 138 14 107 chr3 165459025 165459211 -52577947 + MER21A LTR ERV1 113 264 -667 1713 153 59 43 chr3 165459217 165459651 -52577507 + MER21A LTR ERV1 377 931 0 948 194 28 129 chr3 165459653 165460049 -52577109 + LTR56-int LTR ERV1 1474 1829 -4502 * 1367 164 19 19 chr3 165460032 165460295 -52576863 + LTR56-int LTR ERV1 2741 3003 -3328 * 1643 166 15 4 chr3 165460291 165460556 -52576602 + LTR56-int LTR ERV1 1037 1304 -5787 515 179 45 18 chr3 165460559 165460671 -52576487 + LTR56-int LTR ERV1 2982 3096 -3235 455 161 8 81 chr3 165460561 165460685 -52576473 + LTR57-int LTR ERVL 937 1051 -4292 * 393 243 89 33 chr3 165460681 165460895 -52576263 + LTR56-int LTR ERV1 1205 1430 -6690 * 4327 153 17 4 chr3 165461025 165461726 -52575432 - MER50 LTR ERV1 -24 710 1 433 262 25 61 chr3 165461862 165462216 -52574942 + LTR56-int LTR ERV1 1528 2953 -1927 6015 182 40 53 chr3 165462260 165464404 -52572754 + LTR56-int LTR ERV1 3613 4911 -212 1030 213 104 69 chr3 165464629 165465051 -52572107 + LTR56 LTR ERV1 9 445 0 210 250 0 0 chr3 165465892 165465952 -52571206 + T-rich Low_complexity Low_complexity 1 60 0 2229 106 7 0 chr3 165466450 165466751 -52570407 - AluSq SINE Alu -7 306 4 2554 44 0 0 chr3 165468017 165468314 -52568844 - AluY SINE Alu -14 297 1 27 49 0 0 chr3 165469246 165469287 -52567871 + AT_rich Low_complexity Low_complexity 1 41 0 647 196 49 37 chr3 165469828 165470043 -52567115 + L1MC3 LINE L1 6142 6343 -1 803 216 0 0 chr3 165470593 165470741 -52566417 + FRAM SINE Alu 1 147 -29 300 239 11 45 chr3 165470741 165470829 -52566329 - L1MC4 LINE L1 -1344 6698 6614 180 152 0 0 chr3 165470848 165470881 -52566277 + (TA)n Simple_repeat Simple_repeat 2 34 0 230 189 27 27 chr3 165471096 165471170 -52565988 + (TA)n Simple_repeat Simple_repeat 1 74 0 234 191 0 0 chr3 165471176 165471218 -52565940 - MIR SINE MIR -1 261 220 1648 222 62 52 chr3 165471368 165471868 -52565290 - MLT1D LTR MaLR 0 505 1 206 296 121 15 chr3 165472215 165472347 -52564811 - L2 LINE L2 -1 3312 3167 285 190 17 0 chr3 165472420 165472478 -52564680 - MER94 DNA DNA -65 69 11 356 298 81 52 chr3 165472503 165472751 -52564407 - L1MC4 LINE L1 -2271 5537 5283 1733 60 98 0 chr3 165472957 165473192 -52563966 + L1PA7 LINE L1 5897 6154 0 29 0 0 0 chr3 165474037 165474066 -52563092 + AT_rich Low_complexity Low_complexity 1 29 0 225 83 0 0 chr3 165474139 165474175 -52562983 + (TTAA)n Simple_repeat Simple_repeat 3 38 0 2067 121 0 0 chr3 165474178 165474458 -52562700 - AluSx SINE Alu -32 280 1 384 301 88 0 chr3 165474975 165475168 -52561990 - L1MC4 LINE L1 -2341 3805 3596 3096 127 13 45 chr3 165475193 165475721 -52561437 + MER9 LTR ERVK 1 511 0 4370 101 29 21 chr3 165475721 165476378 -52560780 + HERVK9 LTR ERVK 1 662 -5254 30084 89 5 1 chr3 165476378 165480373 -52556785 + HERVK9 LTR ERVK 1625 5634 -282 1525 58 0 0 chr3 165480470 165480658 -52556500 + HERVK9 LTR ERVK 5635 5822 -94 792 238 167 16 chr3 165480659 165480911 -52556247 - Charlie1b DNA MER1_type -233 290 1 253 347 32 0 chr3 165481814 165481909 -52555249 + MIR SINE MIR 87 184 -78 205 186 0 0 chr3 165482029 165482072 -52555086 + (TTAAA)n Simple_repeat Simple_repeat 3 45 0 972 219 67 54 chr3 165482175 165482472 -52554686 - LTR9B LTR ERV1 -337 307 7 6043 160 36 17 chr3 165482478 165484357 -52552801 + L1PB1 LINE L1 459 2471 -5094 5490 158 38 22 chr3 165484356 165485967 -52551191 + L1PB1 LINE L1 5547 7206 -364 * 207 69 0 0 chr3 165485967 165485996 -52551162 + (TA)n Simple_repeat Simple_repeat 2 30 0 5490 158 38 22 chr3 165485996 165486368 -52550790 + L1PB1 LINE L1 7206 7570 0 * 10969 176 19 23 chr3 165486356 165490036 -52547122 + L1M1 LINE L1 2436 6113 -1452 590 174 0 43 chr3 165490036 165490151 -52547007 - THE1C LTR MaLR -265 110 1 8755 126 78 11 chr3 165490151 165491631 -52545527 - THE1C-int LTR MaLR 0 1580 3 1631 168 37 40 chr3 165491633 165492009 -52545149 - THE1C LTR MaLR 0 375 1 1818 185 60 8 chr3 165492616 165493266 -52543892 - L1M3 LINE L1 -541 5642 4965 323 286 29 43 chr3 165493270 165493480 -52543678 - L1ME3A LINE L1 0 6170 5964 1681 245 58 50 chr3 165493571 165494352 -52542806 - L1MC5 LINE L1 -431 7530 6744 3815 122 87 68 chr3 165494952 165495722 -52541436 - LTR1 LTR ERV1 0 785 1 330 316 58 34 chr3 165495831 165496144 -52541014 - HAL1b LINE L1 -845 503 176 1857 154 13 13 chr3 165496144 165496456 -52540702 - AluJb SINE Alu 0 312 1 330 316 58 34 chr3 165496456 165496559 -52540599 - HAL1b LINE L1 -1172 176 77 710 301 106 30 chr3 165497693 165498318 -52538840 - L1MC5 LINE L1 -1804 6004 5333 363 143 89 71 chr3 165498545 165498657 -52538501 - MER51D LTR ERV1 -44 613 500 1823 136 48 45 chr3 165499140 165499514 -52537644 - THE1C LTR MaLR 0 375 1 1945 176 43 49 chr3 165499695 165500184 -52536974 - L1MB4 LINE L1 -1 6179 5694 1120 240 11 93 chr3 165500176 165500813 -52536345 - L1MC5 LINE L1 -2720 3426 2930 * 1493 184 34 44 chr3 165500813 165501107 -52536051 + AluJo SINE Alu 3 293 -19 1120 240 11 93 chr3 165501107 165501454 -52535704 - L1MC5 LINE L1 -3216 2930 2556 273 193 0 35 chr3 165501454 165501511 -52535647 - MLT1A2 LTR MaLR -319 55 1 184 352 74 34 chr3 165502400 165502576 -52534582 - L2 LINE L2 0 3313 3131 7441 39 0 0 chr3 165502683 165504182 -52532976 - L1PA5 LINE L1 -3 6151 4652 8427 59 11 1 chr3 165504182 165505295 -52531863 + L1P LINE L1 2165 3288 -2858 288 125 0 0 chr3 165505833 165505873 -52531285 - MLT2D LTR ERVL 0 414 375 279 0 0 0 chr3 165505873 165505904 -52531254 + (TAGA)n Simple_repeat Simple_repeat 2 32 0 367 158 30 8 chr3 165505930 165506063 -52531095 + (TA)n Simple_repeat Simple_repeat 1 136 0 542 172 37 0 chr3 165506075 165506332 -52530826 + (TA)n Simple_repeat Simple_repeat 1 292 -9 207 0 0 0 chr3 165506332 165506355 -52530803 + (TG)n Simple_repeat Simple_repeat 2 24 0 542 172 37 0 chr3 165506355 165506366 -52530792 + (TA)n Simple_repeat Simple_repeat 292 301 0 889 214 0 82 chr3 165506372 165506592 -52530566 - MLT2B2 LTR ERVL -72 443 242 794 242 60 87 chr3 165506665 165506917 -52530241 + MER54A LTR ERVL 190 591 -210 1374 167 8 36 chr3 165507076 165507328 -52529830 - MLT2B1 LTR ERVL -275 245 1 443 250 108 0 chr3 165509195 165509315 -52527843 - MIR SINE MIR -63 199 67 2133 128 0 0 chr3 165509416 165509706 -52527452 + AluSx SINE Alu 7 296 -16 5380 81 0 0 chr3 165510241 165510955 -52526203 - L1PA8 LINE L1 0 6172 5459 13428 157 14 115 chr3 165510958 165514381 -52522777 - L1P LINE L1 -3059 3087 12 21 36 0 0 chr3 165514533 165514561 -52522597 + AT_rich Low_complexity Low_complexity 1 28 0 244 297 9 9 chr3 165514865 165514976 -52522182 + (CATATA)n Simple_repeat Simple_repeat 3 113 0 226 114 57 0 chr3 165516716 165516751 -52520407 + MER101B LTR ERV1 249 285 -285 568 234 43 48 chr3 165516752 165516940 -52520218 + MER101 LTR ERV1 233 419 -55 30 0 0 0 chr3 165518181 165518211 -52518947 + AT_rich Low_complexity Low_complexity 1 30 0 28 29 0 0 chr3 165518912 165518947 -52518211 + AT_rich Low_complexity Low_complexity 1 35 0 2358 231 116 44 chr3 165519624 165520777 -52516381 - L1M4 LINE L1 -1161 4985 3750 643 130 0 0 chr3 165520840 165520932 -52516226 - AluSg/x SINE Alu -14 296 205 268 253 13 0 chr3 165520932 165521011 -52516147 - L1M4 LINE L1 -2469 3677 3598 * 7374 171 38 29 chr3 165521000 165521034 -52516124 - L1M LINE L1 -800 5346 5314 3915 157 33 42 chr3 165521034 165521543 -52515615 - L1MA9 LINE L1 -12 6300 5799 246 32 0 0 chr3 165521543 165521574 -52515584 + (TG)n Simple_repeat Simple_repeat 2 32 0 3915 157 33 42 chr3 165521574 165521853 -52515305 - L1MA9 LINE L1 -513 5799 5519 7374 171 38 29 chr3 165521853 165522359 -52514799 - L1M LINE L1 -832 5314 4814 1428 194 62 73 chr3 165522359 165522796 -52514362 + MSTB1 LTR MaLR 1 432 0 7374 171 38 29 chr3 165522796 165523419 -52513739 - L1M LINE L1 -1332 4814 4195 2307 91 3 0 chr3 165523419 165523715 -52513443 - AluY SINE Alu -14 297 1 7374 171 38 29 chr3 165523715 165524215 -52512943 - L1M LINE L1 -1951 4195 3701 297 207 0 0 chr3 165524384 165524442 -52512716 - L1MD3 LINE L1 -299 7696 7639 336 198 17 17 chr3 165524681 165524797 -52512361 + (CATATA)n Simple_repeat Simple_repeat 2 117 0 1281 186 82 11 chr3 165525369 165525649 -52511509 + AluJo SINE Alu 13 312 0 180 256 0 47 chr3 165529631 165529674 -52507484 + L3 LINE CR1 1290 1330 -247 206 302 0 0 chr3 165530658 165530711 -52506447 + CT-rich Low_complexity Low_complexity 3 55 0 32 0 0 0 chr3 165530776 165530808 -52506350 + AT_rich Low_complexity Low_complexity 1 32 0 1311 245 55 63 chr3 165531949 165532443 -52504715 - MLT1D LTR MaLR 0 505 16 1459 102 106 0 chr3 165533879 165534125 -52503033 - L1MA5A LINE L1 -5 6292 6021 1317 211 29 77 chr3 165534627 165535006 -52502152 - MLT1B LTR MaLR 0 390 30 430 94 13 60 chr3 165535027 165535176 -52501982 + (TA)n Simple_repeat Simple_repeat 2 143 0 21 0 0 0 chr3 165535817 165535838 -52501320 + AT_rich Low_complexity Low_complexity 1 21 0 24 77 0 0 chr3 165536335 165536387 -52500771 + AT_rich Low_complexity Low_complexity 1 52 0 4342 162 4 0 chr3 165537083 165537830 -52499328 - L1PA14 LINE L1 -1396 4750 4001 6175 99 10 11 chr3 165537830 165539231 -52497927 + L1PA14 LINE L1 4763 6161 0 2644 207 16 7 chr3 165540125 165540695 -52496463 - L1MD3 LINE L1 -5 7990 7416 371 220 0 55 chr3 165540697 165540788 -52496370 - MLT1F1 LTR MaLR -437 130 45 556 141 0 0 chr3 165540795 165540887 -52496271 - L1MC3 LINE L1 -687 7098 7007 467 279 65 111 chr3 165540909 165541013 -52496145 - HAL1b LINE L1 -894 454 347 2062 129 7 0 chr3 165541013 165541307 -52495851 - AluSg SINE Alu -14 296 1 467 279 65 111 chr3 165541307 165541617 -52495541 - HAL1b LINE L1 -1001 347 59 695 302 32 20 chr3 165541625 165541877 -52495281 - L1ME1 LINE L1 -20 6146 5892 275 289 60 30 chr3 165542893 165543125 -52494033 + L1M4 LINE L1 2536 2774 -3372 774 212 56 22 chr3 165543142 165543321 -52493837 + MLT2B2 LTR ERVL 292 476 -39 329 253 13 13 chr3 165543333 165543408 -52493750 + Tigger3(Golem) DNA MER2_type 1 75 -2954 938 159 242 0 chr3 165543445 165543672 -52493486 + MSTA LTR MaLR 1 282 -146 2168 110 0 3 chr3 165543688 165543988 -52493170 + AluSx SINE Alu 1 299 -13 21 0 0 0 chr3 165544751 165544772 -52492386 + AT_rich Low_complexity Low_complexity 1 21 0 320 270 15 29 chr3 165545207 165545344 -52491814 - HAL1b LINE L1 -814 534 400 2123 128 0 3 chr3 165545359 165545671 -52491487 - AluSx SINE Alu -1 311 1 1324 211 10 32 chr3 165545681 165545994 -52491164 - AluJo SINE Alu -6 306 1 489 252 41 16 chr3 165546049 165546172 -52490986 + MER8 DNA MER2_type 109 234 -5 25 0 0 0 chr3 165546250 165546275 -52490883 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chr3 165546290 165546332 -52490826 + AT_rich Low_complexity Low_complexity 1 42 0 195 339 93 81 chr3 165546855 165547165 -52489993 + L2 LINE L2 2944 3257 -15 241 180 39 56 chr3 165548004 165548182 -52488976 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 199 318 72 50 chr3 165548182 165548500 -52488658 - L2 LINE L2 -1621 1693 1369 206 100 0 50 chr3 165549046 165549086 -52488072 + (CAAAA)n Simple_repeat Simple_repeat 5 42 0 556 286 39 22 chr3 165549969 165550151 -52487007 + MIR SINE MIR 7 191 -71 21 0 0 0 chr3 165551352 165551373 -52485785 + AT_rich Low_complexity Low_complexity 1 21 0 233 356 58 0 chr3 165551571 165551658 -52485500 + MIR SINE MIR 39 130 -78 2185 107 0 3 chr3 165552751 165553049 -52484109 + AluSq SINE Alu 1 297 -16 361 281 58 26 chr3 165553059 165553262 -52483896 + L1M2 LINE L1 1510 1898 -4318 356 283 45 53 chr3 165553673 165553900 -52483258 + L1MEc LINE L1 2193 2377 -3838 444 316 9 13 chr3 165553905 165554136 -52483022 + L1MEc LINE L1 2437 2666 -3549 388 288 107 56 chr3 165554390 165554810 -52482348 + L1MEc LINE L1 3154 3561 -2654 1112 205 4 34 chr3 165554810 165555049 -52482109 + MER46A DNA MER2_type 1 232 -4 322 250 76 7 chr3 165555353 165555497 -52481661 + L1MEc LINE L1 3908 4061 -2154 2391 72 7 0 chr3 165555697 165556002 -52481156 - AluSc SINE Alu -2 307 1 22 56 0 0 chr3 165556022 165556058 -52481100 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr3 165556421 165556447 -52480711 + AT_rich Low_complexity Low_complexity 1 26 0 440 202 79 0 chr3 165556623 165556712 -52480446 - MER5A DNA MER1_type 0 189 94 2168 85 3 64 chr3 165557168 165557498 -52479660 - AluSx SINE Alu 0 312 3 756 0 0 0 chr3 165559354 165559438 -52477720 + (CATATA)n Simple_repeat Simple_repeat 4 87 0 2698 289 228 49 chr3 165560189 165562587 -52474571 + L2 LINE L2 92 3008 -305 958 260 60 52 chr3 165562598 165562922 -52474236 + L1MEc LINE L1 2050 2357 -3858 2355 61 10 0 chr3 165562922 165563218 -52473940 + AluY SINE Alu 1 299 -12 958 260 60 52 chr3 165563218 165563516 -52473642 + L1MEc LINE L1 2357 2651 -3564 679 251 19 14 chr3 165563587 165563798 -52473360 - L1M1 LINE L1 -4360 3205 2994 332 261 31 31 chr3 165564333 165564494 -52472664 + L1MEc LINE L1 1027 1187 -5018 1832 146 23 62 chr3 165564741 165565131 -52472027 - THE1C LTR MaLR 0 375 1 261 179 18 0 chr3 165565226 165565282 -52471876 + L1MB7 LINE L1 6123 6179 -5 * 1608 223 54 87 chr3 165565281 165566098 -52471060 + L1MEc LINE L1 4453 5242 -973 318 333 45 17 chr3 165567845 165568022 -52469136 - MIR SINE MIR -7 255 74 188 67 33 0 chr3 165568511 165568541 -52468617 + (TAGA)n Simple_repeat Simple_repeat 2 32 0 2165 120 0 0 chr3 165568875 165569176 -52467982 + AluSq SINE Alu 1 301 -12 240 111 185 0 chr3 165569234 165569288 -52467870 - L1MA4A LINE L1 -4 6299 6236 1341 194 13 45 chr3 165569705 165570019 -52467139 + AluJo SINE Alu 1 304 -8 198 0 0 0 chr3 165570019 165570041 -52467117 + (GGGGA)n Simple_repeat Simple_repeat 5 26 0 654 86 51 8 chr3 165570072 165570189 -52466969 + G-rich Low_complexity Low_complexity 5 126 0 270 239 0 0 chr3 165571695 165571766 -52465392 + (TATG)n Simple_repeat Simple_repeat 2 72 0 329 216 0 14 chr3 165571944 165572018 -52465140 + MLT1A1 LTR MaLR 293 365 0 572 324 110 10 chr3 165572021 165572311 -52464847 + L3 LINE CR1 1251 1569 -8 22 0 0 0 chr3 165572394 165572416 -52464742 + AT_rich Low_complexity Low_complexity 1 22 0 2043 126 0 0 chr3 165572416 165572709 -52464449 + AluY SINE Alu 1 293 -18 615 293 20 20 chr3 165572793 165572991 -52464167 - MIR SINE MIR 0 262 65 192 40 0 0 chr3 165573970 165573995 -52463163 + (CA)n Simple_repeat Simple_repeat 1 25 0 * 264 30 0 0 chr3 165573994 165574027 -52463131 + (TC)n Simple_repeat Simple_repeat 1 33 0 415 299 120 0 chr3 165574409 165574593 -52462565 + MIR SINE MIR 54 259 -3 2184 78 32 36 chr3 165574597 165574905 -52462253 + AluY SINE Alu 2 308 -3 189 217 43 0 chr3 165575762 165575854 -52461304 + (CCCCAG)n Simple_repeat Simple_repeat 1 96 0 339 202 0 0 chr3 165575885 165575984 -52461174 + (CCCCAG)n Simple_repeat Simple_repeat 4 102 0 2433 181 70 86 chr3 165576136 165576837 -52460321 + LTR8A LTR ERV1 38 727 0 2261 129 3 0 chr3 165576928 165577239 -52459919 - AluSx SINE Alu 0 312 1 765 145 103 22 chr3 165580415 165580674 -52456484 - LTR49 LTR ERV1 -1 607 324 923 115 286 18 chr3 165580677 165580894 -52456264 - LTR29 LTR ERV1 -347 275 1 4837 163 18 16 chr3 165580925 165581831 -52455327 + MER49 LTR ERV1 5 912 -11 1845 164 50 14 chr3 165581925 165582284 -52454874 + MSTA LTR MaLR 1 372 -56 476 84 0 0 chr3 165582360 165582431 -52454727 + MSTA LTR MaLR 358 428 0 427 297 70 27 chr3 165582436 165582692 -52454466 - MLT1J LTR MaLR -239 272 6 933 206 18 23 chr3 165582783 165583002 -52454156 - MER20 DNA MER1_type 0 219 2 1021 229 199 0 chr3 165584126 165584428 -52452730 + MLT1A1 LTR MaLR 1 362 -3 187 338 250 0 chr3 165586250 165586386 -52450772 - MER5B DNA MER1_type 0 178 9 926 244 140 32 chr3 165589016 165589416 -52447742 + MER77 LTR ERV1 181 601 -4 2157 115 0 0 chr3 165590176 165590464 -52446694 - AluSg SINE Alu -22 288 1 204 111 0 0 chr3 165591067 165591103 -52446055 + (TC)n Simple_repeat Simple_repeat 2 37 0 318 228 117 25 chr3 165591252 165591414 -52445744 - L1ME3 LINE L1 -1 6161 5985 1617 251 42 58 chr3 165591456 165591735 -52445423 + MLT1E LTR MaLR 6 288 -305 2374 87 0 0 chr3 165591735 165592034 -52445124 + AluSg SINE Alu 1 299 -11 1617 251 42 58 chr3 165592034 165592352 -52444806 + MLT1E LTR MaLR 288 593 0 616 214 95 68 chr3 165592358 165592523 -52444635 - L1ME3 LINE L1 -210 5952 5774 1834 142 144 21 chr3 165592523 165592904 -52444254 + MSTA LTR MaLR 1 428 0 616 214 95 68 chr3 165592904 165593032 -52444126 - L1ME3 LINE L1 -388 5774 5651 294 217 36 12 chr3 165593034 165593117 -52444041 - L1ME3 LINE L1 -543 5619 5535 198 352 56 0 chr3 165593595 165593666 -52443492 + L2 LINE L2 2581 2655 -659 230 295 86 29 chr3 165593853 165593958 -52443200 + L2 LINE L2 3154 3264 -8 851 209 17 11 chr3 165594740 165594917 -52442241 - MER45A DNA AcHobo 0 178 1 2275 146 22 0 chr3 165596459 165596815 -52440343 + THE1B LTR MaLR 1 364 0 735 191 51 6 chr3 165597081 165597238 -52439920 - MER5A DNA MER1_type -25 164 1 410 192 26 0 chr3 165597300 165597378 -52439780 - Tigger7 DNA MER2_type -259 80 1 375 209 9 43 chr3 165597438 165597553 -52439605 - L1MC/D LINE L1 -2083 6120 6010 490 276 76 16 chr3 165597567 165597882 -52439276 - L1MC/D LINE L1 -1632 4932 4599 970 180 24 71 chr3 165597882 165598137 -52439021 + MLT1B LTR MaLR 148 390 0 2829 238 11 80 chr3 165598137 165599159 -52437999 - L1MC/D LINE L1 -4951 1094 144 1000 192 0 5 chr3 165599162 165599355 -52437803 - MLT1D LTR MaLR 0 505 314 395 242 6 79 chr3 165599437 165599615 -52437543 - MLT1D LTR MaLR -460 166 2 472 165 63 31 chr3 165599615 165599742 -52437416 - L1MC/D LINE L1 -6245 319 189 2221 107 3 0 chr3 165599742 165600031 -52437127 - AluSx SINE Alu -22 290 1 280 268 52 65 chr3 165600988 165601141 -52436017 + Charlie8 DNA MER1_type 1 151 -2266 440 298 38 0 chr3 165602107 165602238 -52434920 - MIR SINE MIR -8 254 119 198 103 0 0 chr3 165603196 165603225 -52433933 + (TCCC)n Simple_repeat Simple_repeat 4 32 0 332 216 113 41 chr3 165603252 165603349 -52433809 - L2 LINE L2 -39 3274 3171 279 321 18 0 chr3 165605251 165605360 -52431798 - LTR67 LTR ERVL -29 528 418 5125 117 46 62 chr3 165605429 165606595 -52430563 + pTR5 LTR ERV1 741 2021 -417 406 120 53 74 chr3 165606597 165606691 -52430467 + LTR30 LTR ERV1 229 302 -75 1390 85 4 34 chr3 165606700 165606935 -52430223 + pTR5 LTR ERV1 172 399 -2039 487 237 50 7 chr3 165607417 165607556 -52429602 + MIR3 SINE MIR 55 199 -9 255 31 0 0 chr3 165607737 165607769 -52429389 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1351 146 0 0 chr3 165607784 165607983 -52429175 - AluSx SINE Alu -113 199 1 1669 167 26 32 chr3 165608252 165608563 -52428595 - AluJo SINE Alu -3 309 1 34 72 0 0 chr3 165609646 165609715 -52427443 + AT_rich Low_complexity Low_complexity 1 69 0 2189 111 24 0 chr3 165610217 165610514 -52426644 + AluSx SINE Alu 1 304 -8 2152 119 0 10 chr3 165611462 165611757 -52425401 + AluY SINE Alu 1 292 -19 485 309 17 119 chr3 165612038 165612391 -52424767 - L2 LINE L2 -66 3206 2890 300 262 84 47 chr3 165612393 165612500 -52424658 + L2 LINE L2 3202 3312 -1 251 368 108 5 chr3 165612516 165612739 -52424419 - L2 LINE L2 -621 2693 2448 23 33 0 0 chr3 165613233 165613263 -52423895 + AT_rich Low_complexity Low_complexity 1 30 0 30 0 0 0 chr3 165613593 165613623 -52423535 + AT_rich Low_complexity Low_complexity 1 30 0 446 295 112 55 chr3 165616245 165616628 -52420530 - MLT1L LTR MaLR -16 599 195 2065 114 14 3 chr3 165616987 165617284 -52419874 - AluSx SINE Alu -12 300 1 746 264 77 23 chr3 165617329 165617681 -52419477 + L1ME3A LINE L1 5799 6169 -1 371 303 28 23 chr3 165619535 165619753 -52417405 - L1ME3A LINE L1 -223 6207 5989 476 281 55 24 chr3 165619782 165620035 -52417123 - L1ME3A LINE L1 -523 5901 5641 1392 159 14 21 chr3 165620036 165620239 -52416919 + MER44D DNA MER2_type 59 262 -2229 270 0 0 0 chr3 165620239 165620269 -52416889 + (CA)n Simple_repeat Simple_repeat 2 31 0 1392 159 14 21 chr3 165620269 165620348 -52416810 + MER44D DNA MER2_type 262 609 0 307 235 22 22 chr3 165620500 165620636 -52416522 - L1ME3A LINE L1 -2797 3609 3474 2457 68 3 0 chr3 165620679 165620989 -52416169 + AluY SINE Alu 1 311 0 1303 150 31 143 chr3 165621062 165621448 -52415710 - MER7A DNA MER2_type -5 341 1 2444 245 54 14 chr3 165621464 165622231 -52414927 - L1MDb LINE L1 -3045 3361 2586 2157 128 54 20 chr3 165622231 165622583 -52414575 + THE1B LTR MaLR 1 364 0 2444 245 54 14 chr3 165622583 165622841 -52414317 - L1MDb LINE L1 -3820 2586 2340 2011 244 67 80 chr3 165622842 165622878 -52414280 - L1MDb LINE L1 -4411 1995 1960 1923 191 3 21 chr3 165622878 165623250 -52413908 + MLT1A1 LTR MaLR 1 365 0 2011 244 67 80 chr3 165623250 165624400 -52412758 - L1MDb LINE L1 -4446 1960 847 1867 127 4 4 chr3 165624400 165624676 -52412482 - AluSq SINE Alu -5 308 33 2011 244 67 80 chr3 165624676 165624742 -52412416 - L1MDb LINE L1 -5559 847 782 359 363 35 0 chr3 165625192 165625363 -52411795 - L1MDb LINE L1 -5472 924 748 1526 230 32 43 chr3 165625373 165625838 -52411320 - MER31B LTR ERV1 0 466 7 4249 166 21 5 chr3 165626424 165627804 -52409354 + L1PA13 LINE L1 4559 5959 -204 1587 137 11 0 chr3 165628861 165629131 -52408027 + HERVFH21 LTR ERV1 4384 4656 -1873 2305 80 0 0 chr3 165629461 165629747 -52407411 + AluSg1 SINE Alu 11 296 -13 530 140 75 0 chr3 165629801 165629894 -52407264 + FLAM_C SINE Alu 7 106 -37 218 236 0 14 chr3 165631483 165631555 -52405603 + (TATATG)n Simple_repeat Simple_repeat 2 72 0 1034 283 82 48 chr3 165631813 165632216 -52404942 - L1MC4a LINE L1 -1734 6074 5686 2378 108 43 8 chr3 165632216 165632568 -52404590 + THE1B LTR MaLR 1 364 0 1034 283 82 48 chr3 165632568 165632952 -52404206 - L1MC4a LINE L1 -2122 5686 5260 308 375 55 10 chr3 165633078 165633278 -52403880 - L1MC4a LINE L1 -1038 5108 4900 2971 191 45 7 chr3 165634607 165634930 -52402228 - MER45R DNA AcHobo 0 1581 1272 2217 108 3 10 chr3 165634930 165635244 -52401914 - AluSx SINE Alu 0 312 1 2971 191 45 7 chr3 165635244 165635610 -52401548 - MER45R DNA AcHobo -309 1272 866 2311 92 0 0 chr3 165635753 165636047 -52401111 - AluY SINE Alu -17 294 1 387 232 38 154 chr3 165636184 165636358 -52400800 - L1M4 LINE L1 -782 5364 5236 2108 137 13 0 chr3 165636358 165636664 -52400494 - AluSx SINE Alu 0 312 3 387 232 38 154 chr3 165636664 165636782 -52400376 - L1M4 LINE L1 -910 5236 5106 741 206 0 0 chr3 165638351 165638482 -52398676 + FLAM_C SINE Alu 1 131 -2 434 282 166 0 chr3 165639186 165639379 -52397779 + L1MC4 LINE L1 6542 6860 -1033 774 205 121 48 chr3 165639522 165639854 -52397304 + LTR21B LTR ERV1 83 438 0 17484 184 30 22 chr3 165639905 165642341 -52394817 + HERVFH21 LTR ERV1 62 2477 -4052 6919 62 29 0 chr3 165642341 165643213 -52393945 - MER11D LTR ERVK 0 897 1 17484 184 30 22 chr3 165643213 165646007 -52391151 + HERVFH21 LTR ERV1 2477 5331 -1198 743 272 18 9 chr3 165646339 165646556 -52390602 + LTR19-int LTR ERV1 4964 5182 -404 236 163 23 0 chr3 165647389 165647432 -52389726 + Alu SINE Alu 245 288 -14 291 190 0 0 chr3 165647432 165647490 -52389668 + (TA)n Simple_repeat Simple_repeat 1 58 0 429 351 76 30 chr3 165648772 165649249 -52387909 - L2 LINE L2 -85 3228 2726 28 48 0 0 chr3 165649321 165649363 -52387795 + AT_rich Low_complexity Low_complexity 1 42 0 471 308 19 33 chr3 165649640 165649851 -52387307 + MIR SINE MIR 17 224 -38 267 333 65 0 chr3 165650205 165650298 -52386860 + L2 LINE L2 3137 3235 -37 2502 148 99 31 chr3 165650325 165650881 -52386277 - LTR49 LTR ERV1 -1 594 1 2185 99 0 7 chr3 165651692 165651984 -52385174 + AluSx SINE Alu 16 305 -7 286 323 10 0 chr3 165651991 165652087 -52385071 - L2 LINE L2 -94 3219 3123 2155 150 70 0 chr3 165652101 165652475 -52384683 - MER57A LTR ERV1 0 403 4 2265 108 0 0 chr3 165654233 165654538 -52382620 - AluSx SINE Alu -7 305 1 27 0 0 0 chr3 165654952 165654979 -52382179 + AT_rich Low_complexity Low_complexity 1 27 0 3167 154 53 116 chr3 165655770 165656644 -52380514 + L1MB7 LINE L1 5366 6184 0 2008 114 3 24 chr3 165656718 165657016 -52380142 + AluSg SINE Alu 1 292 -18 1700 242 82 84 chr3 165657134 165657644 -52379514 + L1ME3A LINE L1 5284 5794 -376 1556 158 29 0 chr3 165657644 165657922 -52379236 - L1MB1 LINE L1 -12 6156 5871 1700 242 82 84 chr3 165657922 165658272 -52378886 + L1ME3A LINE L1 5794 6143 -27 273 48 24 0 chr3 165658272 165658314 -52378844 + MADE1 DNA Mariner 1 43 -37 1427 180 3 76 chr3 165658819 165659135 -52378023 + AluJo SINE Alu 9 301 -11 191 114 29 0 chr3 165659399 165659434 -52377724 + (TAA)n Simple_repeat Simple_repeat 1 36 0 25 0 0 0 chr3 165659803 165659828 -52377330 + AT_rich Low_complexity Low_complexity 1 25 0 1673 185 11 0 chr3 165660646 165660932 -52376226 - AluSx SINE Alu -23 289 1 230 95 24 0 chr3 165661189 165661231 -52375927 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 283 287 0 53 chr3 165662710 165662783 -52374375 - MLT1J LTR MaLR -106 405 337 2372 112 27 30 chr3 165662783 165663148 -52374010 + THE1B LTR MaLR 1 364 0 283 287 0 53 chr3 165663148 165663168 -52373990 - MLT1J LTR MaLR -174 337 317 5577 153 26 17 chr3 165663422 165664003 -52373155 + L1PB1 LINE L1 4131 4706 -1445 248 0 31 0 chr3 165664003 165664035 -52373123 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 5577 153 26 17 chr3 165664035 165665103 -52372055 + L1PB1 LINE L1 4706 5796 -355 306 0 0 0 chr3 165665103 165665137 -52372021 + (CA)n Simple_repeat Simple_repeat 2 35 0 5577 153 26 17 chr3 165665137 165665496 -52371662 + L1PB1 LINE L1 5796 6151 0 246 62 0 0 chr3 165665573 165665605 -52371553 + (GAAAA)n Simple_repeat Simple_repeat 3 34 0 345 275 8 17 chr3 165666215 165666335 -52370823 + L1ME LINE L1 5615 5733 -431 238 340 277 0 chr3 165666349 165666508 -52370650 + L2 LINE L2 310 512 -2802 445 262 8 16 chr3 165666517 165666639 -52370519 + MER58 DNA MER1_type 1 121 -2299 195 189 0 0 chr3 165666656 165666709 -52370449 + GA-rich Low_complexity Low_complexity 1 53 0 472 182 0 0 chr3 165666718 165666795 -52370363 + MER58 DNA MER1_type 130 2411 -9 1991 307 129 23 chr3 165666798 165667713 -52369445 + L2 LINE L2 549 1560 -1754 186 316 120 26 chr3 165668332 165668449 -52368709 - L2 LINE L2 -1248 2066 1939 513 303 19 19 chr3 165668573 165668735 -52368423 + MER5B DNA MER1_type 17 178 0 420 20 0 0 chr3 165668880 165668929 -52368229 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 201 147 0 0 chr3 165668932 165668966 -52368192 + (TA)n Simple_repeat Simple_repeat 2 35 0 406 135 10 10 chr3 165669036 165669132 -52368026 + (TA)n Simple_repeat Simple_repeat 2 97 0 2406 80 0 3 chr3 165669135 165669448 -52367710 - AluSx SINE Alu 0 312 1 324 325 40 16 chr3 165669467 165669593 -52367565 - MIR SINE MIR -121 141 13 199 50 75 0 chr3 165670294 165670334 -52366824 + A-rich Low_complexity Low_complexity 2 44 0 21 0 0 0 chr3 165670364 165670385 -52366773 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr3 165671500 165671529 -52365629 + AT_rich Low_complexity Low_complexity 1 29 0 225 275 38 0 chr3 165671533 165671551 -52365607 + L1MC4 LINE L1 6618 6700 -1342 210 258 0 0 chr3 165671551 165671613 -52365545 + (TA)n Simple_repeat Simple_repeat 1 62 0 1832 105 0 47 chr3 165672284 165672585 -52364573 + AluSc SINE Alu 17 304 0 21 36 0 0 chr3 165672585 165672613 -52364545 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 165673046 165673068 -52364090 + AT_rich Low_complexity Low_complexity 1 22 0 818 199 81 28 chr3 165673147 165673358 -52363800 + AluJo SINE Alu 85 306 -6 23 54 0 0 chr3 165673745 165673782 -52363376 + AT_rich Low_complexity Low_complexity 1 37 0 216 67 0 0 chr3 165674161 165674191 -52362967 + (CA)n Simple_repeat Simple_repeat 1 30 0 679 185 0 0 chr3 165674373 165674481 -52362677 + MER2 DNA MER2_type 1 108 -237 536 163 0 0 chr3 165674474 165674560 -52362598 + MER2 DNA MER2_type 46 131 -214 * 1516 147 42 131 chr3 165674585 165674967 -52362191 - MER7A DNA MER2_type 0 346 1 981 192 62 14 chr3 165674967 165675173 -52361985 + MER2 DNA MER2_type 130 345 0 1603 166 19 22 chr3 165676256 165676569 -52360589 - AluJb SINE Alu 0 312 1 21 82 0 0 chr3 165676684 165676733 -52360425 + AT_rich Low_complexity Low_complexity 1 49 0 33 25 0 0 chr3 165676839 165676879 -52360279 + AT_rich Low_complexity Low_complexity 1 40 0 487 252 71 18 chr3 165677368 165677745 -52359413 + MER113 DNA MER1_type? 1 413 -108 30 27 0 0 chr3 165678434 165678471 -52358687 + AT_rich Low_complexity Low_complexity 1 37 0 34 0 0 0 chr3 165678845 165678879 -52358279 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr3 165679140 165679162 -52357996 + AT_rich Low_complexity Low_complexity 1 22 0 25893 137 13 17 chr3 165679976 165686433 -52350725 - L1PA8 LINE L1 0 6487 1 284 242 108 25 chr3 165687208 165687328 -52349830 - L1MC4 LINE L1 -5 8037 7908 2232 89 0 0 chr3 165687350 165687632 -52349526 - AluSx SINE Alu -17 295 14 338 100 11 33 chr3 165687777 165687867 -52349291 + (TA)n Simple_repeat Simple_repeat 2 89 0 312 247 0 12 chr3 165687868 165687949 -52349209 - L1MC4 LINE L1 -1339 6703 6624 3166 79 0 0 chr3 165687949 165688353 -52348805 - MLT2A1 LTR ERVL -40 404 1 241 215 13 63 chr3 165688366 165688445 -52348713 - L1ME2 LINE L1 -93 6071 5997 854 159 0 0 chr3 165689385 165689523 -52347635 - AluJo SINE Alu -173 139 2 272 292 114 30 chr3 165690004 165690206 -52346952 - HAL1 LINE L1 -1854 653 435 1081 173 0 10 chr3 165690282 165690479 -52346679 - MLT1B LTR MaLR -193 197 3 395 282 91 33 chr3 165690521 165690676 -52346482 + HAL1 LINE L1 1327 1502 -1005 423 207 89 77 chr3 165690676 165690845 -52346313 - FAM SINE Alu -4 171 1 395 282 91 33 chr3 165690845 165690930 -52346228 + HAL1 LINE L1 1502 1581 -926 230 220 0 0 chr3 165690956 165691006 -52346152 + L1MC4 LINE L1 6652 6701 -1341 353 288 104 18 chr3 165691013 165691176 -52345982 + HAL1 LINE L1 2131 2307 -200 1698 98 56 0 chr3 165691176 165691410 -52345748 + AluSq SINE Alu 47 293 -20 399 156 39 0 chr3 165692089 165692166 -52344992 - L1MA4 LINE L1 -5 6295 6216 428 325 0 0 chr3 165694011 165694128 -52343030 + MIR SINE MIR 32 148 -114 208 294 25 147 chr3 165694228 165694432 -52342726 - L2 LINE L2 -814 2500 2322 204 215 15 31 chr3 165694730 165694795 -52342363 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 1878 161 17 0 chr3 165695211 165695502 -52341656 - AluSx SINE Alu -16 296 1 1915 124 0 11 chr3 165696084 165696397 -52340761 + AluSg SINE Alu 1 310 0 204 40 0 0 chr3 165698814 165698839 -52338319 + (TG)n Simple_repeat Simple_repeat 1 25 0 238 184 0 0 chr3 165698915 165698953 -52338205 + MER63 DNA MER1_type 2 39 -891 6818 59 15 1 chr3 165699415 165700300 -52336858 - L1PA7 LINE L1 -4 6150 5254 216 163 0 0 chr3 165700783 165700826 -52336332 + T-rich Low_complexity Low_complexity 1 43 0 185 337 23 12 chr3 165701029 165701115 -52336043 + MIR3 SINE MIR 108 194 -14 1484 159 36 25 chr3 165701980 165702278 -52334880 + AluJo SINE Alu 31 312 0 29 90 0 0 chr3 165703252 165703330 -52333828 + AT_rich Low_complexity Low_complexity 1 78 0 243 186 57 0 chr3 165703331 165703401 -52333757 - MER116 DNA Mariner -6 74 1 520 339 59 21 chr3 165703431 165703670 -52333488 + MIR SINE MIR 8 255 -7 1725 178 7 3 chr3 165703685 165703972 -52333186 - AluJo SINE Alu -23 289 2 26 0 0 0 chr3 165703993 165704019 -52333139 + AT_rich Low_complexity Low_complexity 1 26 0 353 256 96 58 chr3 165704100 165704256 -52332902 - MIR SINE MIR -52 210 49 466 254 156 98 chr3 165704394 165704638 -52332520 - MIR SINE MIR -2 260 3 25 0 0 0 chr3 165704664 165704689 -52332469 + AT_rich Low_complexity Low_complexity 1 25 0 1731 151 17 14 chr3 165704710 165705002 -52332156 - AluJb SINE Alu -19 293 1 615 261 17 28 chr3 165705581 165705761 -52331397 - MER45A DNA AcHobo 0 178 1 563 335 39 35 chr3 165706394 165706624 -52330534 + MIR SINE MIR 32 262 0 219 279 15 0 chr3 165706629 165706697 -52330461 + (TA)n Simple_repeat Simple_repeat 2 70 0 262 204 0 0 chr3 165706706 165706760 -52330398 + L1MC4 LINE L1 6652 6705 -1337 339 85 0 0 chr3 165708204 165708251 -52328907 + (CA)n Simple_repeat Simple_repeat 2 48 0 1844 133 0 75 chr3 165708269 165708601 -52328557 - AluSq SINE Alu -4 309 3 374 320 132 0 chr3 165710290 165710518 -52326640 - L2 LINE L2 -1161 2153 1896 307 260 21 21 chr3 165710620 165710716 -52326442 - L1ME4a LINE L1 -59 6062 5967 21 57 0 0 chr3 165710842 165710877 -52326281 + AT_rich Low_complexity Low_complexity 1 35 0 319 271 59 0 chr3 165710998 165711083 -52326075 - L2 LINE L2 -5 3308 3219 1159 340 137 18 chr3 165711259 165712489 -52324669 - L2 LINE L2 -341 2973 1597 199 336 19 19 chr3 165712578 165712682 -52324476 - L2 LINE L2 -1907 1407 1304 1374 235 52 21 chr3 165713451 165713781 -52323377 + MLT1A1 LTR MaLR 1 336 -28 187 338 25 25 chr3 165713989 165714069 -52323089 - L2 LINE L2 -5 3308 3229 878 345 40 38 chr3 165714069 165714521 -52322637 + L2 LINE L2 2852 3304 -9 366 23 0 0 chr3 165717595 165717638 -52319520 + (TA)n Simple_repeat Simple_repeat 1 43 0 580 274 31 20 chr3 165718431 165718685 -52318473 - L1ME LINE L1 -4915 1650 1326 21 0 0 0 chr3 165718722 165718743 -52318415 + AT_rich Low_complexity Low_complexity 1 21 0 1495 99 9 0 chr3 165718815 165719027 -52318131 + L1P3 LINE L1 8 221 -6240 * 11899 118 11 17 chr3 165719005 165721444 -52315714 + L1P3 LINE L1 36 2464 -3997 1869 85 0 0 chr3 165721450 165721696 -52315462 + L1PA7 LINE L1 5891 6136 -18 666 171 0 8 chr3 165721734 165721851 -52315307 - LTR8 LTR ERV1 -554 137 22 339 202 0 0 chr3 165721998 165722097 -52315061 + (CTGGGG)n Simple_repeat Simple_repeat 4 102 0 189 217 43 0 chr3 165722128 165722220 -52314938 + (CTGGGG)n Simple_repeat Simple_repeat 1 96 0 1989 100 44 4 chr3 165723135 165723445 -52313713 - AluY SINE Alu 0 321 1 210 254 36 0 chr3 165723932 165723987 -52313171 - MIR SINE MIR -104 158 102 781 169 0 0 chr3 165723987 165724117 -52313041 + FLAM_C SINE Alu 1 130 -13 2104 121 7 13 chr3 165724316 165724622 -52312536 - AluSx SINE Alu -8 304 1 584 256 89 55 chr3 165725457 165725830 -52311328 - MSTD LTR MaLR 0 396 1 212 384 93 17 chr3 165726075 165726247 -52310911 - L2 LINE L2 -6 3266 3082 420 280 93 27 chr3 165727249 165727399 -52309759 - MER91A DNA MER1_type -12 184 25 29 0 0 0 chr3 165727520 165727549 -52309609 + AT_rich Low_complexity Low_complexity 1 29 0 2101 119 94 0 chr3 165727549 165727795 -52309363 - L1PB3 LINE L1 -91 6063 5771 258 105 0 0 chr3 165727795 165727833 -52309325 + (TA)n Simple_repeat Simple_repeat 1 38 0 2101 119 94 0 chr3 165727833 165727948 -52309210 - L1PB3 LINE L1 -383 5771 5668 256 322 121 7 chr3 165728032 165728181 -52308977 - MIR SINE MIR -15 247 82 575 335 101 22 chr3 165728260 165728332 -52308826 + L3 LINE CR1 1174 1239 -338 2063 171 28 3 chr3 165728332 165728688 -52308470 + MLT1A1 LTR MaLR 1 365 0 575 335 101 22 chr3 165728688 165728982 -52308176 + L3 LINE CR1 1239 1569 -8 22 0 0 0 chr3 165729062 165729084 -52308074 + AT_rich Low_complexity Low_complexity 1 22 0 2090 126 0 0 chr3 165729084 165729377 -52307781 + AluY SINE Alu 1 293 -18 603 293 20 20 chr3 165729461 165729659 -52307499 - MIR SINE MIR 0 262 65 476 159 32 24 chr3 165731436 165731562 -52305596 - LTR49 LTR ERV1 -1 594 468 201 121 0 0 chr3 165732433 165732466 -52304692 + (TC)n Simple_repeat Simple_repeat 1 33 0 2375 66 7 7 chr3 165732541 165732843 -52304315 - AluSg SINE Alu -8 302 1 2269 75 0 17 chr3 165733311 165733606 -52303552 + AluSc SINE Alu 1 290 -19 533 147 86 9 chr3 165733636 165733752 -52303406 + L1MC1 LINE L1 6209 6333 0 301 286 83 52 chr3 165733769 165734306 -52302852 + L1ME LINE L1 5175 5734 -428 207 0 0 0 chr3 165734813 165734836 -52302322 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 278 311 112 36 chr3 165735314 165735565 -52301593 + MLT1L LTR MaLR 125 394 -221 2289 172 9 11 chr3 165735784 165736231 -52300927 - L1MB3 LINE L1 -2 6181 5736 545 213 0 0 chr3 165736232 165736340 -52300818 - L1MB3 LINE L1 -608 5563 5456 218 398 39 47 chr3 165737769 165738025 -52299133 - L2 LINE L2 -76 3196 2943 395 345 50 21 chr3 165740435 165740673 -52296485 - MIR SINE MIR 0 262 18 527 104 0 0 chr3 165741041 165741118 -52296040 - MADE1 DNA Mariner -3 77 1 437 333 7 0 chr3 165741287 165741422 -52295736 - MER115 DNA AcHobo -405 288 153 263 276 31 43 chr3 165742334 165742497 -52294661 - HERV16 LTR ERVL -300 4696 4536 740 273 110 13 chr3 165742847 165743089 -52294069 - HERV16 LTR ERVL -3753 1243 965 315 71 0 0 chr3 165743089 165743131 -52294027 + (TG)n Simple_repeat Simple_repeat 2 43 0 740 273 110 13 chr3 165743131 165743188 -52293970 - HERV16 LTR ERVL -4031 965 915 1145 315 41 19 chr3 165743352 165743917 -52293241 - HERV16 LTR ERVL -4311 685 109 1055 164 5 0 chr3 165744050 165744245 -52292913 + L1PBa LINE L1 6 201 -6662 9896 125 37 1 chr3 165744245 165746919 -52290239 + L1PBa LINE L1 635 3527 -3335 472 360 15 20 chr3 165747054 165747254 -52289904 - LTR16A LTR ERVL -218 232 34 21 0 0 0 chr3 165747899 165747920 -52289238 + AT_rich Low_complexity Low_complexity 1 21 0 1149 251 20 3 chr3 165798122 165798417 -52238741 - L1M4 LINE L1 -2019 4938 4639 1666 262 151 12 chr3 165798439 165798924 -52238234 - L1M4 LINE L1 -6100 759 208 2310 75 0 69 chr3 165799358 165799746 -52237412 + AluSg SINE Alu 1 365 0 235 300 42 4 chr3 165800542 165800675 -52236483 - MER5A DNA MER1_type -8 181 1 229 256 33 33 chr3 165800699 165800789 -52236369 - MIR SINE MIR 0 262 173 694 250 13 19 chr3 165800801 165800957 -52236201 - MIR SINE MIR -36 226 72 235 264 9 28 chr3 165801116 165801222 -52235936 + MER33 DNA MER1_type 1 104 -220 2735 130 84 4 chr3 165801552 165802006 -52235152 - MER41C LTR ERV1 -64 490 1 21 0 0 0 chr3 165803255 165803276 -52233882 + AT_rich Low_complexity Low_complexity 1 21 0 257 318 146 0 chr3 165803330 165803440 -52233718 - L2 LINE L2 -2 3311 3186 191 358 46 33 chr3 165803608 165803759 -52233399 + L2 LINE L2 3161 3313 0 2441 68 0 0 chr3 165804136 165804431 -52232727 + AluY SINE Alu 1 295 -16 186 167 0 0 chr3 165804441 165804477 -52232681 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 2189 117 0 0 chr3 165805690 165805989 -52231169 - AluSx SINE Alu -13 299 1 2407 81 0 0 chr3 165806236 165806543 -52230615 - AluY SINE Alu -3 308 2 742 270 67 56 chr3 165806621 165806962 -52230196 - L1ME3A LINE L1 -326 6238 5894 330 282 72 80 chr3 165807046 165807365 -52229793 - L1ME3A LINE L1 -904 5636 5316 1656 153 6 50 chr3 165807365 165807685 -52229473 - AluSx SINE Alu -6 306 1 330 282 72 80 chr3 165807685 165808018 -52229140 - L1ME3A LINE L1 -1224 5316 4989 688 160 128 39 chr3 165808020 165808176 -52228982 + MLT1B LTR MaLR 93 262 -128 329 252 43 38 chr3 165808189 165808399 -52228759 - L1ME3A LINE L1 -1587 4953 4743 207 0 0 0 chr3 165809397 165809420 -52227738 + (TA)n Simple_repeat Simple_repeat 1 23 0 4065 191 64 18 chr3 165809741 165810854 -52226304 - L1MB3 LINE L1 -3 6180 5018 1493 161 47 138 chr3 165810854 165810985 -52226173 + MLT1B LTR MaLR 1 142 -248 2239 81 28 0 chr3 165810985 165811268 -52225890 - AluSg SINE Alu -19 291 1 1493 161 47 138 chr3 165811268 165811565 -52225593 + MLT1B LTR MaLR 142 390 0 1978 207 143 26 chr3 165811581 165811975 -52225183 - L1MD2 LINE L1 -1 6358 5875 13412 142 51 14 chr3 165811975 165813055 -52224103 - Tigger1 DNA MER2_type -1 2417 1378 2489 56 0 3 chr3 165813055 165813359 -52223799 + AluY SINE Alu 1 303 -8 13412 142 51 14 chr3 165813359 165814609 -52222549 - Tigger1 DNA MER2_type -1040 1378 1 1978 207 143 26 chr3 165814609 165814789 -52222369 - L1MD2 LINE L1 -484 5875 5717 467 196 101 6 chr3 165814791 165814949 -52222209 - L1ME3A LINE L1 -4023 2517 2345 558 304 41 6 chr3 165814966 165815137 -52222021 - MIR SINE MIR -75 187 11 26 30 0 0 chr3 165816322 165816355 -52220803 + AT_rich Low_complexity Low_complexity 1 33 0 368 298 57 8 chr3 165817290 165817414 -52219744 + L2 LINE L2 3184 3313 0 443 275 82 34 chr3 165817800 165818069 -52219089 + Tigger8 DNA MER2_type 285 566 -100 604 183 42 133 chr3 165818296 165818537 -52218621 - MER20 DNA MER1_type 0 219 1 205 308 46 0 chr3 165819857 165819922 -52217236 + L2 LINE L2 2704 2771 -543 198 293 218 11 chr3 165820208 165820382 -52216776 + L2 LINE L2 3104 3313 0 225 0 0 0 chr3 165820480 165820505 -52216653 + (CA)n Simple_repeat Simple_repeat 2 26 0 680 307 69 11 chr3 165820510 165820787 -52216371 + L1ME LINE L1 203 495 -5575 351 268 0 0 chr3 165820912 165820983 -52216175 + LTR16A LTR ERVL 365 435 -15 1475 220 81 78 chr3 165821240 165821574 -52215584 - L1ME3 LINE L1 -1 6161 5830 243 0 0 0 chr3 165821574 165821601 -52215557 + (TA)n Simple_repeat Simple_repeat 2 28 0 1899 166 0 3 chr3 165821601 165821908 -52215250 - AluJo SINE Alu -6 306 1 1475 220 81 78 chr3 165821908 165822127 -52215031 - L1ME3 LINE L1 -331 5831 5605 24 0 0 0 chr3 165822219 165822243 -52214915 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr3 165823280 165823303 -52213855 + AT_rich Low_complexity Low_complexity 1 23 0 302 65 0 22 chr3 165823565 165823611 -52213547 + (TTCC)n Simple_repeat Simple_repeat 2 46 0 1933 150 0 7 chr3 165823698 165823998 -52213160 + AluSx SINE Alu 1 298 -14 294 352 138 42 chr3 165824065 165824443 -52212715 - L2 LINE L2 -337 2977 2564 34 55 0 0 chr3 165824982 165825037 -52212121 + AT_rich Low_complexity Low_complexity 1 55 0 231 114 0 0 chr3 165825291 165825335 -52211823 + (T)n Simple_repeat Simple_repeat 1 44 0 784 327 122 38 chr3 165825340 165825759 -52211399 + LTR33A LTR ERVL 71 523 0 25 51 0 0 chr3 165826163 165826202 -52210956 + AT_rich Low_complexity Low_complexity 1 39 0 199 224 13 118 chr3 165826280 165826356 -52210802 - MIR3 SINE MIR -54 154 87 21 0 0 0 chr3 165826539 165826560 -52210598 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 165826716 165826738 -52210420 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 165827122 165827143 -52210015 + AT_rich Low_complexity Low_complexity 1 21 0 2020 205 44 30 chr3 165827390 165827673 -52209485 + MLT1D LTR MaLR 8 302 -203 297 0 0 0 chr3 165827673 165827706 -52209452 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2020 205 44 30 chr3 165827706 165827895 -52209263 + MLT1D LTR MaLR 302 487 -18 925 242 176 34 chr3 165827895 165828337 -52208821 + MLT1D LTR MaLR 1 505 0 574 240 34 14 chr3 165828619 165828765 -52208393 - MIR SINE MIR -21 241 93 183 250 21 21 chr3 165829135 165829183 -52207975 + MIR3 SINE MIR 155 202 -6 2394 50 0 0 chr3 165829387 165829713 -52207445 + AluY SINE Alu 1 326 0 689 307 87 4 chr3 165829753 165829994 -52207164 - MIR SINE MIR -1 261 1 382 279 64 3 chr3 165830239 165830385 -52206773 + MIR SINE MIR 45 197 -65 200 346 50 40 chr3 165830527 165830628 -52206530 - L2 LINE L2 -16 3256 3155 245 204 34 80 chr3 165830747 165830835 -52206323 - L2 LINE L2 -4 3309 3226 830 281 41 25 chr3 165831532 165831774 -52205384 - MIR SINE MIR -1 261 16 183 250 21 21 chr3 165831884 165831932 -52205226 - MIR3 SINE MIR -6 202 155 905 161 43 0 chr3 165832366 165832528 -52204630 + AluJo SINE Alu 123 291 -21 1417 138 0 13 chr3 165832945 165833177 -52203981 - MER30 DNA MER1_type 0 230 2 388 301 73 61 chr3 165833357 165833603 -52203555 - L2 LINE L2 0 3313 3065 21 0 0 0 chr3 165833781 165833802 -52203356 + AT_rich Low_complexity Low_complexity 1 21 0 7592 27 9 0 chr3 165833821 165835020 -52202138 - L1PA4 LINE L1 -11 6144 4942 1818 114 38 0 chr3 165837695 165837959 -52199199 + AluY SINE Alu 1 274 -37 207 0 0 0 chr3 165837964 165837987 -52199171 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 586 0 13 13 chr3 165838455 165838530 -52198628 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 26 50 0 0 chr3 165839406 165839446 -52197712 + AT_rich Low_complexity Low_complexity 1 40 0 543 270 171 37 chr3 165840242 165840594 -52196564 - L1ME LINE L1 -400 5770 5372 330 304 30 42 chr3 165840653 165840821 -52196337 - L1ME2 LINE L1 -38 6109 5944 946 306 67 23 chr3 165840870 165841471 -52195687 - L1ME2 LINE L1 -202 5951 5325 941 27 0 0 chr3 165841514 165841625 -52195533 + L1PA3 LINE L1 6045 6155 0 454 282 107 64 chr3 165841632 165842238 -52194920 - L1ME2 LINE L1 -863 5266 4635 445 284 112 65 chr3 165842643 165843073 -52194085 - L1ME2 LINE L1 -1906 4223 3774 229 368 12 18 chr3 165843108 165843271 -52193887 - L1ME2 LINE L1 -5509 610 449 710 296 16 32 chr3 165843950 165844269 -52192889 - L1MC/D LINE L1 -575 5587 5282 22 0 0 0 chr3 165844362 165844384 -52192774 + AT_rich Low_complexity Low_complexity 1 22 0 189 147 0 0 chr3 165845067 165845101 -52192057 + (TG)n Simple_repeat Simple_repeat 2 35 0 392 304 60 30 chr3 165845875 165846092 -52191066 - MIR SINE MIR -12 250 28 646 288 96 47 chr3 165846451 165846836 -52190322 + MLT1J1 LTR MaLR 7 410 -36 11275 171 62 7 chr3 165847455 165849511 -52187647 + L1M1 LINE L1 15 2182 -5383 803 170 7 7 chr3 165849678 165849819 -52187339 - MER2 DNA MER2_type -204 141 1 197 300 0 29 chr3 165850753 165850823 -52186335 + MIR SINE MIR 48 115 -147 2250 78 0 0 chr3 165851994 165852277 -52184881 - AluY SINE Alu -27 284 2 5401 132 31 2 chr3 165852790 165853768 -52183390 + L1PA16 LINE L1 5163 6166 0 1625 136 23 22 chr3 165854181 165854526 -52182632 - MER4A LTR ERV1 0 664 261 518 130 9 102 chr3 165854526 165854634 -52182524 - MER4A LTR ERV1 -566 98 1 16356 102 48 21 chr3 165854635 165857320 -52179838 - MER4A-int LTR ERV1 0 6598 3840 4167 139 73 22 chr3 165857327 165858220 -52178938 - MER4A-int LTR ERV1 -2924 3674 2737 975 202 74 5 chr3 165858220 165858423 -52178735 + LTR8 LTR ERV1 1 217 -474 3834 78 88 45 chr3 165858438 165859130 -52178028 - MER4A-int LTR ERV1 -4113 2485 1764 2639 112 36 13 chr3 165859146 165860029 -52177129 - MER4A-int LTR ERV1 -5578 1180 199 1388 222 65 37 chr3 165860062 165860413 -52176745 - MER4A-int LTR ERV1 -4119 2212 1852 2548 103 252 49 chr3 165860567 165861138 -52176020 - MER4A-int LTR ERV1 -5911 687 1 1857 147 6 22 chr3 165861141 165861489 -52175669 - MER4A LTR ERV1 0 664 264 591 92 0 101 chr3 165861490 165861599 -52175559 - MER4A LTR ERV1 -566 98 1 2362 97 0 0 chr3 165862545 165862853 -52174305 + AluSx SINE Alu 1 308 -4 207 291 58 12 chr3 165862880 165862966 -52174192 - MIR SINE MIR -85 177 88 493 211 231 0 chr3 165863730 165863877 -52173281 + MER5A DNA MER1_type 9 189 0 242 220 20 0 chr3 165864543 165864593 -52172565 + GA-rich Low_complexity Low_complexity 6 56 0 378 360 28 6 chr3 165865597 165865775 -52171383 - MLT1I LTR MaLR -188 221 40 1546 219 0 0 chr3 165866452 165866749 -52170409 - AluJo SINE Alu -15 297 1 422 181 14 0 chr3 165866914 165866986 -52170172 - MER94 DNA DNA -59 75 3 23 0 0 0 chr3 165867457 165867480 -52169678 + AT_rich Low_complexity Low_complexity 1 23 0 1630 181 10 7 chr3 165867789 165868081 -52169077 + AluJb SINE Alu 1 293 -19 505 217 98 116 chr3 165868697 165869103 -52168055 - L1MC5 LINE L1 -179 7782 7384 1633 183 7 25 chr3 165869762 165870046 -52167112 + AluJb SINE Alu 3 281 -31 266 149 50 8 chr3 165870071 165870192 -52166966 + (TA)n Simple_repeat Simple_repeat 1 126 0 1235 252 35 70 chr3 165870433 165870893 -52166265 + LTR40b LTR ERVL 4 447 -15 973 259 93 8 chr3 165873031 165873290 -52163868 + MLT1G1 LTR MaLR 22 302 -293 958 230 172 27 chr3 165873280 165873548 -52163610 + MLT1G LTR MaLR 243 590 0 * 1338 197 34 4 chr3 165873641 165873905 -52163253 + AluJo SINE Alu 3 274 -38 835 354 83 14 chr3 165874012 165874602 -52162556 - L2 LINE L2 -344 2970 2340 23 68 0 0 chr3 165875273 165875317 -52161841 + AT_rich Low_complexity Low_complexity 1 44 0 298 336 148 8 chr3 165875802 165875930 -52161228 + L2 LINE L2 3122 3267 -5 204 353 148 40 chr3 165875944 165876443 -52160715 + L2 LINE L2 1718 2270 -1044 180 77 0 0 chr3 165877145 165877171 -52159987 + (GA)n Simple_repeat Simple_repeat 2 27 0 190 286 89 18 chr3 165877590 165877646 -52159512 + L3b LINE CR1 1503 1562 -21 21 0 0 0 chr3 165877820 165877841 -52159317 + AT_rich Low_complexity Low_complexity 1 21 0 1482 166 3 41 chr3 165877850 165878145 -52159013 - AluJo SINE Alu 0 312 29 5176 143 23 20 chr3 165878163 165879513 -52157645 - L1PA16 LINE L1 -11 6155 4802 1195 159 5 0 chr3 165879563 165879758 -52157400 + L1PA16 LINE L1 5962 6157 -9 185 318 9 112 chr3 165879930 165880037 -52157121 + L2 LINE L2 2959 3054 -218 1086 242 54 22 chr3 165881320 165881597 -52155561 + MLT1A1 LTR MaLR 19 304 -61 26 50 0 0 chr3 165881752 165881792 -52155366 + AT_rich Low_complexity Low_complexity 1 40 0 255 229 0 0 chr3 165882632 165882680 -52154478 - L2 LINE L2 -2 3270 3223 185 305 49 12 chr3 165883034 165883116 -52154042 - MIR SINE MIR -60 148 64 315 242 145 16 chr3 165884126 165884250 -52152908 + MIR SINE MIR 69 208 -54 217 368 123 5 chr3 165885362 165885566 -52151592 + MIR SINE MIR 11 238 -24 2231 93 14 0 chr3 165886191 165886482 -52150676 - AluSq SINE Alu -18 295 1 1613 183 13 37 chr3 165887222 165887522 -52149636 - AluJo SINE Alu -19 293 1 198 339 24 24 chr3 165887684 165887811 -52149347 + L2 LINE L2 2632 2758 -556 1551 170 7 42 chr3 165887839 165888128 -52149030 + AluJb SINE Alu 1 279 -33 239 0 32 0 chr3 165888128 165888159 -52148999 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 12312 82 9 6 chr3 165888192 165890668 -52146490 + L1PA7 LINE L1 3668 6154 0 3874 182 26 29 chr3 165890668 165891053 -52146105 + L1M1 LINE L1 3238 3623 -3942 194 0 39 0 chr3 165891053 165891079 -52146079 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 3874 182 26 29 chr3 165891079 165891122 -52146036 + L1M1 LINE L1 3623 3665 -3900 2282 103 3 10 chr3 165891122 165891434 -52145724 + AluSg SINE Alu 1 310 0 3874 182 26 29 chr3 165891434 165892256 -52144902 + L1M1 LINE L1 3665 4478 -3087 1445 135 12 48 chr3 165892257 165892509 -52144649 + MSTB LTR MaLR 3 245 -181 3465 116 19 26 chr3 165892509 165893095 -52144063 + L1MA2 LINE L1 5722 6303 -1 21 0 0 0 chr3 165893096 165893117 -52144041 + AT_rich Low_complexity Low_complexity 1 21 0 306 298 75 12 chr3 165893133 165893294 -52143864 + L1ME4a LINE L1 5945 6115 -6 1611 178 42 0 chr3 165894021 165894353 -52142805 - L1MA6 LINE L1 0 6300 5955 4147 163 16 51 chr3 165894353 165895276 -52141882 + L1M1 LINE L1 5082 5972 -1593 2495 114 39 7 chr3 165895276 165895323 -52141835 + L1PB3 LINE L1 5731 5775 -379 360 0 0 0 chr3 165895323 165895363 -52141795 + (TG)n Simple_repeat Simple_repeat 2 41 0 2495 114 39 7 chr3 165895363 165895720 -52141438 + L1PB3 LINE L1 5775 6154 0 408 153 0 24 chr3 165895884 165895969 -52141189 + L1PA15 LINE L1 6082 6164 -1 35 0 0 0 chr3 165896120 165896155 -52141003 + AT_rich Low_complexity Low_complexity 1 35 0 1278 164 18 36 chr3 165897911 165898240 -52138918 - MER33 DNA MER1_type -1 323 1 694 250 13 19 chr3 165898399 165898555 -52138603 + MIR SINE MIR 72 226 -36 229 256 33 33 chr3 165898567 165898657 -52138501 + MIR SINE MIR 173 262 0 235 300 42 4 chr3 165898681 165898814 -52138344 + MER5A DNA MER1_type 1 181 -8 238 330 57 11 chr3 165899197 165899285 -52137873 - MIR SINE MIR -113 149 58 192 135 0 0 chr3 165899370 165899407 -52137751 + (TAA)n Simple_repeat Simple_repeat 2 38 0 550 266 87 6 chr3 165899437 165899610 -52137548 - MIR SINE MIR -48 214 28 2362 42 0 3 chr3 165899610 165899935 -52137223 - AluY SINE Alu 0 324 1 517 343 89 35 chr3 165901079 165901684 -52135474 + L2 LINE L2 2600 3237 -35 314 250 120 19 chr3 165902063 165902171 -52134987 - L1ME LINE L1 -687 5434 5316 2128 115 0 7 chr3 165902375 165902670 -52134488 + AluSc SINE Alu 1 293 -16 1788 261 53 19 chr3 165902734 165903355 -52133803 - L1ME1 LINE L1 -5 6161 5520 299 44 22 0 chr3 165903712 165903757 -52133401 + (TTTTTG)n Simple_repeat Simple_repeat 1 46 0 227 303 13 13 chr3 165903770 165903846 -52133312 - MLT1K LTR MaLR -141 447 372 249 291 19 29 chr3 165903946 165904049 -52133109 - MLT1L LTR MaLR -369 246 145 693 303 85 47 chr3 165904154 165904497 -52132661 - L1ME1 LINE L1 -1462 4684 4311 2115 133 3 0 chr3 165904497 165904798 -52132360 - AluSx SINE Alu -10 302 1 693 303 85 47 chr3 165904798 165905009 -52132149 - L1ME1 LINE L1 -1835 4311 4109 231 322 11 0 chr3 165905198 165905285 -52131873 - L1P LINE L1 -2301 3845 3758 2499 44 3 0 chr3 165906396 165906692 -52130466 - AluY SINE Alu -14 297 1 29 0 0 0 chr3 165907457 165907486 -52129672 + AT_rich Low_complexity Low_complexity 1 29 0 601 201 156 55 chr3 165907669 165907868 -52129290 - MER20 DNA MER1_type 0 219 1 777 198 134 32 chr3 165908072 165908289 -52128869 + MER8 DNA MER2_type 1 239 0 2061 129 0 0 chr3 165908688 165908983 -52128175 - AluSq SINE Alu -18 295 1 351 303 11 0 chr3 165909586 165909675 -52127483 - L2 LINE L2 0 3272 3183 543 318 111 37 chr3 165910019 165910161 -52126997 + L1ME4a LINE L1 5532 5662 -459 2279 132 25 6 chr3 165910161 165910518 -52126640 - THE1B LTR MaLR 0 364 1 543 318 111 37 chr3 165910518 165910890 -52126268 + L1ME4a LINE L1 5662 6084 -37 22 88 0 0 chr3 165911823 165911880 -52125278 + AT_rich Low_complexity Low_complexity 1 57 0 2086 145 3 0 chr3 165912443 165912754 -52124404 + AluSx SINE Alu 1 312 0 345 337 10 0 chr3 165913200 165913298 -52123860 + MER115 DNA AcHobo 127 225 -468 1015 220 28 0 chr3 165913430 165913644 -52123514 + MER115 DNA AcHobo 424 643 -50 512 304 99 43 chr3 165913927 165914230 -52122928 - LTR16C LTR ERVL -16 475 156 1918 149 55 22 chr3 165914570 165914933 -52122225 - THE1C LTR MaLR 0 375 1 9374 143 25 20 chr3 165914933 165916504 -52120654 - THE1C-int LTR MaLR 0 1580 3 1861 142 57 35 chr3 165916506 165916873 -52120285 - THE1C LTR MaLR 0 375 1 1715 219 82 21 chr3 165916873 165917298 -52119860 - MLT1C LTR MaLR -16 451 1 1658 193 7 3 chr3 165917759 165918055 -52119103 + AluJb SINE Alu 1 297 -15 21 0 0 0 chr3 165918221 165918242 -52118916 + AT_rich Low_complexity Low_complexity 1 21 0 294 330 50 55 chr3 165919369 165919569 -52117589 + MIR SINE MIR 12 210 -52 22 35 0 0 chr3 165920149 165920178 -52116980 + AT_rich Low_complexity Low_complexity 1 29 0 553 304 45 63 chr3 165920341 165920719 -52116439 + MLT1J LTR MaLR 28 398 -113 255 248 137 26 chr3 165920815 165920932 -52116226 + L2 LINE L2 3184 3313 0 201 315 9 9 chr3 165920965 165921073 -52116085 + CT-rich Low_complexity Low_complexity 1 108 0 438 342 67 14 chr3 165921840 165922501 -52114657 - L1MEc LINE L1 -4916 1480 785 190 330 78 26 chr3 165925793 165925908 -52111250 - L2 LINE L2 -14 3299 3179 515 207 25 0 chr3 165927414 165927434 -52109724 - L1MA10 LINE L1 -32 6302 6283 2230 206 140 18 chr3 165927434 165928090 -52109068 - L1ME2 LINE L1 -44 6189 5454 2692 221 51 43 chr3 165928183 165929091 -52108067 - L1ME2 LINE L1 -768 5447 4533 787 167 79 19 chr3 165929217 165929433 -52107725 - L1ME2 LINE L1 -1673 4542 4314 * 4703 262 87 34 chr3 165929421 165931714 -52105444 - L1ME2 LINE L1 -3668 2547 157 280 233 0 0 chr3 165931723 165931783 -52105375 - L1ME2 LINE L1 -6300 96 37 21 82 0 0 chr3 165933206 165933255 -52103903 + AT_rich Low_complexity Low_complexity 1 49 0 1721 208 34 17 chr3 165933341 165933789 -52103369 + MLT1C LTR MaLR 1 616 -10 1477 183 77 42 chr3 165933926 165934303 -52102855 - MLT1B LTR MaLR 0 390 1 530 267 85 53 chr3 165934591 165934838 -52102320 + MLT1K LTR MaLR 329 583 -5 645 235 174 103 chr3 165934912 165935002 -52102156 + MLT1F LTR MaLR 1 83 -459 1896 143 10 0 chr3 165935002 165935296 -52101862 + AluSx SINE Alu 1 297 -15 645 235 174 103 chr3 165935296 165935711 -52101447 + MLT1F LTR MaLR 83 542 0 472 281 80 20 chr3 165935930 165936129 -52101029 + MIR SINE MIR 52 262 0 27 0 0 0 chr3 165936909 165936936 -52100222 + AT_rich Low_complexity Low_complexity 1 27 0 358 236 107 64 chr3 165937248 165937481 -52099677 - L1ME4a LINE L1 -19 6102 5860 218 329 129 12 chr3 165937536 165937621 -52099537 + MER91C DNA MER1_type 22 116 -24 2098 188 39 10 chr3 165937991 165938405 -52098753 + MSTB LTR MaLR 1 426 0 183 162 0 0 chr3 165938569 165938606 -52098552 + CT-rich Low_complexity Low_complexity 2 38 0 213 221 29 19 chr3 165939000 165939104 -52098054 + GA-rich Low_complexity Low_complexity 3 107 0 2475 71 0 0 chr3 165940111 165940454 -52096704 + AluY SINE Alu 1 343 0 213 183 17 33 chr3 165940644 165940704 -52096454 + CT-rich Low_complexity Low_complexity 3 61 0 21 0 0 0 chr3 165941672 165941693 -52095465 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr3 165942115 165942136 -52095022 + (T)n Simple_repeat Simple_repeat 1 21 0 1034 279 102 60 chr3 165942860 165943427 -52093731 - MLT1G1 LTR MaLR -2 593 3 460 379 13 18 chr3 165943764 165943991 -52093167 - MIR SINE MIR -25 237 12 312 333 22 54 chr3 165944579 165944801 -52092357 + MLT1K LTR MaLR 116 330 -258 250 224 52 0 chr3 165944860 165944918 -52092240 + MLT1H LTR MaLR 43 103 -446 345 294 56 74 chr3 165944925 165945156 -52092002 + MLT1K LTR MaLR 356 582 -6 38 81 0 0 chr3 165945276 165945363 -52091795 + AT_rich Low_complexity Low_complexity 1 87 0 687 325 100 12 chr3 165945595 165945924 -52091234 - L2 LINE L2 -15 3298 2941 21 0 0 0 chr3 165946019 165946040 -52091118 + AT_rich Low_complexity Low_complexity 1 21 0 1994 252 61 20 chr3 165946343 165946475 -52090683 + L1MC4 LINE L1 6459 6584 -1458 485 47 47 0 chr3 165946475 165946560 -52090598 + (TAGA)n Simple_repeat Simple_repeat 1 89 0 1994 252 61 20 chr3 165946560 165946577 -52090581 + L1MC4 LINE L1 6584 6599 -1443 245 51 26 0 chr3 165946577 165946616 -52090542 + (TG)n Simple_repeat Simple_repeat 2 41 0 1994 252 61 20 chr3 165946616 165947608 -52089550 + L1MC4 LINE L1 6599 7897 -145 2475 148 54 0 chr3 165948804 165949210 -52087948 - MSTC LTR MaLR 0 428 1 24 0 0 0 chr3 165949617 165949641 -52087517 + AT_rich Low_complexity Low_complexity 1 24 0 25 65 0 0 chr3 165949930 165949976 -52087182 + AT_rich Low_complexity Low_complexity 1 46 0 633 252 58 39 chr3 165950218 165950424 -52086734 + L2 LINE L2 3104 3313 0 446 212 0 12 chr3 165950470 165950555 -52086603 + ORSL DNA AcHobo 191 274 -1 2502 57 0 0 chr3 165950770 165951070 -52086088 - AluY SINE Alu -10 301 2 12378 80 8 1 chr3 165951323 165953795 -52083363 - L1PA7 LINE L1 -2 6152 3668 239 0 32 0 chr3 165953828 165953859 -52083299 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1521 170 7 42 chr3 165953859 165954148 -52083010 - AluJb SINE Alu -33 279 1 197 339 24 24 chr3 165954176 165954303 -52082855 - L2 LINE L2 -556 2758 2632 1568 187 13 37 chr3 165954465 165954765 -52082393 + AluJo SINE Alu 1 293 -19 2213 92 14 0 chr3 165955505 165955798 -52081360 + AluSq SINE Alu 1 297 -16 220 373 123 5 chr3 165956423 165956627 -52080531 - MIR SINE MIR -24 238 11 395 265 116 14 chr3 165957739 165957886 -52079272 - MIR SINE MIR -54 208 47 754 295 10 0 chr3 165957955 165958155 -52079003 - L1ME1 LINE L1 -5 6161 5960 35 24 0 0 chr3 165958430 165958472 -52078686 + AT_rich Low_complexity Low_complexity 1 42 0 225 351 79 6 chr3 165959818 165959983 -52077175 + L2 LINE L2 2869 3045 -227 2369 60 0 0 chr3 165960087 165960371 -52076787 + AluY SINE Alu 10 293 -18 25 51 0 0 chr3 165961211 165961250 -52075908 + AT_rich Low_complexity Low_complexity 1 39 0 3477 139 4 4 chr3 165961289 165961841 -52075317 - L1PB3 LINE L1 -6 6148 5597 182 322 11 46 chr3 165962096 165962183 -52074975 + MIR SINE MIR 68 151 -111 1878 155 3 29 chr3 165962210 165962526 -52074632 - AluSx SINE Alu -4 308 1 299 295 91 20 chr3 165962613 165962762 -52074396 - MIR SINE MIR -37 171 32 2460 68 0 3 chr3 165962830 165963138 -52074020 - AluY SINE Alu -4 307 1 2091 222 47 0 chr3 165963266 165963752 -52073406 + L1P LINE L1 4032 4540 -1606 329 88 18 0 chr3 165963752 165963809 -52073349 + L1PA16 LINE L1 6108 6165 -1 231 224 15 15 chr3 165963878 165963945 -52073213 + GA-rich Low_complexity Low_complexity 1 67 0 578 239 10 48 chr3 165964220 165964429 -52072729 - L1MC5 LINE L1 -49 7912 7712 405 330 99 6 chr3 165964496 165964678 -52072480 - MIR SINE MIR -49 213 15 277 362 47 47 chr3 165965118 165965372 -52071786 - L2 LINE L2 -556 2758 2505 182 358 25 57 chr3 165965442 165965721 -52071437 - L2 LINE L2 -1007 2307 2038 219 268 0 0 chr3 165966225 165966281 -52070877 + L2 LINE L2 3216 3271 -1 692 202 0 0 chr3 165966932 165967041 -52070117 - FLAM_A SINE Alu -33 109 1 2081 100 0 10 chr3 165967471 165967761 -52069397 - AluSq SINE Alu -15 298 12 2611 58 0 0 chr3 165968155 165968495 -52068663 + AluY SINE Alu 1 340 0 213 183 17 33 chr3 165968684 165968744 -52068414 + CT-rich Low_complexity Low_complexity 3 61 0 21 0 0 0 chr3 165969712 165969733 -52067425 + AT_rich Low_complexity Low_complexity 1 21 0 1033 279 105 62 chr3 165970902 165971464 -52065694 - MLT1G1 LTR MaLR -7 588 3 457 379 13 18 chr3 165971801 165972028 -52065130 - MIR SINE MIR -25 237 12 315 333 22 54 chr3 165972616 165972838 -52064320 + MLT1K LTR MaLR 116 330 -258 251 224 52 0 chr3 165972897 165972955 -52064203 + MLT1H LTR MaLR 43 103 -446 346 282 59 77 chr3 165972962 165973182 -52063976 + MLT1K LTR MaLR 356 571 -17 38 81 0 0 chr3 165973313 165973400 -52063758 + AT_rich Low_complexity Low_complexity 1 87 0 677 325 100 12 chr3 165973632 165973961 -52063197 - L2 LINE L2 -15 3298 2941 21 0 0 0 chr3 165974056 165974077 -52063081 + AT_rich Low_complexity Low_complexity 1 21 0 1619 264 50 14 chr3 165974380 165974512 -52062646 + L1MC4a LINE L1 6459 6585 -1223 449 49 49 0 chr3 165974512 165974593 -52062565 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 1619 264 50 14 chr3 165974593 165974610 -52062548 + L1MC4a LINE L1 6585 6600 -1208 245 51 26 0 chr3 165974610 165974649 -52062509 + (TG)n Simple_repeat Simple_repeat 2 41 0 1619 264 50 14 chr3 165974649 165975016 -52062142 + L1MC4a LINE L1 6600 6995 -813 * 1941 249 74 20 chr3 165974989 165975641 -52061517 + L1MC4 LINE L1 7211 7897 -145 2491 148 54 0 chr3 165976837 165977243 -52059915 - MSTC LTR MaLR 0 428 1 24 0 0 0 chr3 165977650 165977674 -52059484 + AT_rich Low_complexity Low_complexity 1 24 0 25 65 0 0 chr3 165977963 165978009 -52059149 + AT_rich Low_complexity Low_complexity 1 46 0 624 264 100 48 chr3 165978207 165978457 -52058701 + L2 LINE L2 3051 3313 0 443 212 0 12 chr3 165978503 165978588 -52058570 + ORSL DNA AcHobo 191 274 -1 2613 52 0 0 chr3 165978803 165979108 -52058050 - AluY SINE Alu -5 306 2 12405 80 8 1 chr3 165979361 165981833 -52055325 - L1PA7 LINE L1 -2 6152 3668 239 0 32 0 chr3 165981866 165981897 -52055261 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1551 170 7 42 chr3 165981897 165982186 -52054972 - AluJb SINE Alu -33 279 1 198 339 24 24 chr3 165982214 165982341 -52054817 - L2 LINE L2 -556 2758 2632 1613 183 13 37 chr3 165982503 165982803 -52054355 + AluJo SINE Alu 1 293 -19 2231 93 14 0 chr3 165983543 165983834 -52053324 + AluSq SINE Alu 1 295 -18 217 368 123 5 chr3 165984459 165984663 -52052495 - MIR SINE MIR -24 238 11 398 265 116 14 chr3 165985775 165985922 -52051236 - MIR SINE MIR -54 208 47 750 295 10 0 chr3 165985991 165986191 -52050967 - L1ME1 LINE L1 -5 6161 5960 35 24 0 0 chr3 165986466 165986508 -52050650 + AT_rich Low_complexity Low_complexity 1 42 0 226 351 79 6 chr3 165987854 165988019 -52049139 + L2 LINE L2 2869 3045 -227 2481 55 0 0 chr3 165988123 165988415 -52048743 + AluY SINE Alu 10 301 -10 183 275 27 154 chr3 165988427 165988576 -52048582 + L2 LINE L2 3137 3266 -6 2133 115 0 3 chr3 165988604 165988899 -52048259 + AluSq SINE Alu 5 298 -15 692 202 0 0 chr3 165989329 165989438 -52047720 + FLAM_A SINE Alu 1 109 -33 219 268 0 0 chr3 165990088 165990144 -52047014 - L2 LINE L2 -1 3271 3216 258 317 54 62 chr3 165990647 165990887 -52046271 + L2 LINE L2 2070 2307 -1007 270 362 47 47 chr3 165990957 165991211 -52045947 + L2 LINE L2 2505 2758 -556 373 335 99 6 chr3 165991651 165991833 -52045325 + MIR SINE MIR 15 213 -49 563 239 10 48 chr3 165991900 165992109 -52045049 + L1MC5 LINE L1 7712 7912 -49 231 224 15 15 chr3 165992384 165992451 -52044707 + CT-rich Low_complexity Low_complexity 1 67 0 328 88 18 0 chr3 165992520 165992577 -52044581 - L1PA16 LINE L1 -1 6165 6108 2044 224 47 0 chr3 165992577 165993063 -52044095 - L1P LINE L1 -1606 4540 4032 2495 68 0 3 chr3 165993191 165993499 -52043659 + AluY SINE Alu 1 307 -4 298 295 91 20 chr3 165993567 165993716 -52043442 + MIR SINE MIR 32 190 -37 1893 159 3 28 chr3 165993804 165994124 -52043034 + AluSx SINE Alu 1 312 0 3542 140 4 4 chr3 165994481 165995044 -52042114 + L1PB3 LINE L1 5586 6148 -6 2185 105 3 7 chr3 165995962 165996256 -52040902 - AluSg SINE Alu -17 293 1 229 216 0 20 chr3 165996727 165996778 -52040380 + CT-rich Low_complexity Low_complexity 1 50 0 256 203 141 0 chr3 165997030 165997094 -52040064 - L1PB4 LINE L1 -5 6151 6079 2559 228 45 11 chr3 165997190 165997853 -52039305 + L1ME1 LINE L1 5258 5943 -223 851 186 186 7 chr3 165997865 165998139 -52039019 + L1MC4 LINE L1 7425 7747 -295 334 300 58 16 chr3 165998163 165998353 -52038805 + L1MC4 LINE L1 7702 7899 -143 249 294 0 0 chr3 165998598 165998666 -52038492 + MER94 DNA DNA 62 129 -5 2435 61 0 16 chr3 165999466 165999777 -52037381 - AluY SINE Alu -5 306 1 867 177 33 133 chr3 166000534 166000805 -52036353 + MLT1D-int LTR MaLR 1113 1356 -15 1781 125 44 80 chr3 166000880 166001184 -52035974 + L1PB4 LINE L1 5808 6099 -57 2249 108 0 7 chr3 166001184 166001489 -52035669 + AluSq SINE Alu 1 303 -10 1781 125 44 80 chr3 166001489 166001545 -52035613 + L1PB4 LINE L1 6099 6155 -1 1102 223 100 45 chr3 166001545 166001944 -52035214 + MLT1D LTR MaLR 85 505 0 225 65 0 0 chr3 166001944 166001975 -52035183 + (TG)n Simple_repeat Simple_repeat 1 31 0 373 203 0 0 chr3 166001976 166002045 -52035113 - AluJ/FRAM SINE Alu -3 299 231 292 329 53 7 chr3 166002454 166002606 -52034552 - L2 LINE L2 0 3313 3155 233 343 14 0 chr3 166002716 166002789 -52034369 + MLT1J2 LTR MaLR 66 139 -311 261 310 23 52 chr3 166002840 166003014 -52034144 + MLT1J LTR MaLR 327 495 -16 862 305 79 16 chr3 166003138 166003505 -52033653 - LTR16C LTR ERVL 0 491 102 643 216 22 43 chr3 166003663 166003848 -52033310 + MIR SINE MIR 81 261 -1 1567 192 14 11 chr3 166004236 166004517 -52032641 + AluJo SINE Alu 1 282 -30 22 56 0 0 chr3 166005941 166005977 -52031181 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr3 166005997 166006017 -52031141 + (CAA)n Simple_repeat Simple_repeat 2 21 0 287 247 39 0 chr3 166006025 166006102 -52031056 + MER116 DNA Mariner 1 80 0 1965 132 3 14 chr3 166006141 166006428 -52030730 + AluSx SINE Alu 1 284 -28 486 0 0 0 chr3 166006428 166006482 -52030676 + (CA)n Simple_repeat Simple_repeat 2 55 0 8350 240 65 49 chr3 166006989 166009426 -52027732 - MER77-int LTR ERV1 -55 4136 1660 2052 142 0 0 chr3 166009431 166009733 -52027425 - AluSx SINE Alu -10 302 1 366 220 42 34 chr3 166009748 166009866 -52027292 - L1M4 LINE L1 -849 5297 5179 1836 176 6 10 chr3 166009867 166010180 -52026978 - AluSx SINE Alu 0 312 1 1202 296 16 62 chr3 166010296 166010668 -52026490 - MER77-int LTR ERV1 -2554 1637 1250 2020 138 0 0 chr3 166010668 166010976 -52026182 - AluSx SINE Alu 0 308 1 1202 296 16 62 chr3 166010976 166010989 -52026169 - MER77-int LTR ERV1 -2941 1250 1238 2399 38 3 0 chr3 166010989 166011281 -52025877 + L1PA7 LINE L1 5862 6154 0 1202 296 16 62 chr3 166011281 166011332 -52025826 - MER77-int LTR ERV1 -2953 1238 1219 1329 298 12 21 chr3 166011493 166011913 -52025245 - MER77-int LTR ERV1 -3775 416 1 1025 286 61 50 chr3 166012003 166012444 -52024714 - MER77 LTR ERV1 -6 599 154 539 238 34 34 chr3 166012436 166012583 -52024575 - MER77 LTR ERV1 -393 212 66 * 185 125 75 0 chr3 166012882 166012922 -52024236 + GA-rich Low_complexity Low_complexity 5 47 0 368 253 84 86 chr3 166012936 166013307 -52023851 + L1M4 LINE L1 3254 3623 -2523 333 276 20 20 chr3 166013307 166013405 -52023753 - MLT1H1 LTR MaLR -457 98 1 224 345 12 0 chr3 166014437 166014521 -52022637 - L2 LINE L2 0 3313 3229 418 99 8 19 chr3 166014523 166014653 -52022505 - MER53 DNA DNA -2 187 15 198 71 0 0 chr3 166015784 166015812 -52021346 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 234 122 122 0 chr3 166015832 166015873 -52021285 + AluSg SINE Alu 1 46 -254 4915 116 68 62 chr3 166015873 166017422 -52019736 + pTR5 LTR ERV1 750 2438 0 1926 126 0 0 chr3 166017425 166017696 -52019462 + AluSg SINE Alu 31 301 -9 36 0 0 0 chr3 166018087 166018123 -52019035 + AT_rich Low_complexity Low_complexity 1 36 0 659 107 27 33 chr3 166021027 166021177 -52015981 + GA-rich Low_complexity Low_complexity 3 151 0 487 238 62 82 chr3 166021561 166021805 -52015353 - MER112 DNA MER1_type -10 250 12 29 28 0 0 chr3 166023687 166023723 -52013435 + AT_rich Low_complexity Low_complexity 1 36 0 265 188 0 0 chr3 166023809 166023857 -52013301 - MIR SINE MIR -108 154 107 355 287 85 0 chr3 166024203 166024332 -52012826 - MIR SINE MIR -36 226 87 33 0 0 0 chr3 166024974 166025007 -52012151 + AT_rich Low_complexity Low_complexity 1 33 0 2076 119 7 0 chr3 166026064 166026357 -52010801 + AluSx SINE Alu 5 299 -13 385 279 70 76 chr3 166026605 166026921 -52010237 + L1ME LINE L1 4940 5253 -893 586 272 65 32 chr3 166026925 166027214 -52009944 + L1ME LINE L1 5258 5578 -543 1276 166 0 48 chr3 166027215 166027444 -52009714 + AluJo SINE Alu 1 218 -94 30 0 0 0 chr3 166027457 166027487 -52009671 + AT_rich Low_complexity Low_complexity 1 30 0 559 196 83 12 chr3 166027507 166027675 -52009483 + L1MC3 LINE L1 5005 5184 -962 1306 112 0 0 chr3 166027675 166027853 -52009305 + AluY SINE Alu 132 309 -2 6328 209 153 53 chr3 166027853 166028975 -52008183 + L1MC3 LINE L1 5435 6444 -1341 553 29 0 0 chr3 166028975 166029043 -52008115 - AluY SINE Alu -18 291 224 6328 209 153 53 chr3 166029043 166029255 -52007903 + L1MC3 LINE L1 6444 6634 -1151 183 100 0 0 chr3 166029255 166029285 -52007873 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 6328 209 153 53 chr3 166029285 166029993 -52007165 + L1MC3 LINE L1 6634 7755 -30 4559 49 0 0 chr3 166029993 166030560 -52006598 - L1P LINE L1 -4060 2086 1520 9610 35 9 0 chr3 166030560 166032494 -52004664 + L1PA4 LINE L1 4210 6152 -3 270 0 0 0 chr3 166032683 166032713 -52004445 + (TG)n Simple_repeat Simple_repeat 2 31 0 1623 190 22 30 chr3 166033367 166033735 -52003423 - MLT1A1 LTR MaLR 0 365 1 1107 208 23 0 chr3 166033966 166034182 -52002976 + MER58A DNA MER1_type 1 221 -3 15013 148 29 22 chr3 166034193 166035372 -52001786 + Tigger2 DNA MER2_type 1 1171 -1547 1997 158 0 0 chr3 166035372 166035670 -52001488 + AluSx SINE Alu 1 298 -14 15013 148 29 22 chr3 166035670 166037190 -51999968 + Tigger2 DNA MER2_type 1171 2718 0 954 348 126 18 chr3 166037369 166038097 -51999061 + L3 LINE CR1 408 1214 -363 335 240 0 0 chr3 166038467 166038542 -51998616 + MER116 DNA Mariner 6 80 0 22 35 0 0 chr3 166039931 166039960 -51997198 + AT_rich Low_complexity Low_complexity 1 29 0 196 266 35 88 chr3 166040263 166040376 -51996782 - MIR3 SINE MIR 0 208 102 1086 266 64 35 chr3 166040574 166040920 -51996238 - MLT1A2 LTR MaLR -1 373 18 343 360 160 0 chr3 166041452 166041677 -51995481 - MIR SINE MIR 0 262 2 387 0 0 0 chr3 166042280 166042323 -51994835 + (TG)n Simple_repeat Simple_repeat 2 44 0 848 318 125 20 chr3 166042334 166042775 -51994383 + MLT1K LTR MaLR 33 519 -69 1068 310 113 14 chr3 166042927 166043369 -51993789 + LTR16C LTR ERVL 6 491 0 1689 25 0 0 chr3 166044036 166044236 -51992922 + L1PA2 LINE L1 5955 6154 -1 374 237 123 18 chr3 166044316 166044430 -51992728 + MER94 DNA DNA 9 134 0 691 304 37 19 chr3 166045523 166045793 -51991365 - MLT1J LTR MaLR 0 511 237 383 264 7 0 chr3 166049078 166049218 -51987940 + (TG)n Simple_repeat Simple_repeat 2 142 0 365 292 31 31 chr3 166050116 166050129 -51987029 - MIR SINE MIR -105 157 145 1616 141 8 0 chr3 166050129 166050377 -51986781 - AluSx SINE Alu -3 309 60 365 292 31 31 chr3 166050377 166050493 -51986665 - MIR SINE MIR -116 146 28 180 302 129 35 chr3 166050698 166050814 -51986344 + MIR SINE MIR 86 212 -50 1640 179 0 47 chr3 166051178 166051497 -51985661 + AluJb SINE Alu 3 306 -6 2141 96 19 44 chr3 166051819 166052184 -51984974 - L1MA4A LINE L1 -5 6298 5943 11962 132 27 2 chr3 166052185 166054058 -51983100 + Tigger1 DNA MER2_type 500 2418 0 537 317 120 10 chr3 166054377 166054686 -51982472 - MLT1L LTR MaLR -143 472 130 1032 149 0 0 chr3 166055196 166055421 -51981737 + (TA)n Simple_repeat Simple_repeat 1 225 0 240 133 0 0 chr3 166055422 166055467 -51981691 - LTR66 LTR ERVL -172 438 394 258 261 29 0 chr3 166055469 166055538 -51981620 + (TATATG)n Simple_repeat Simple_repeat 1 71 0 913 121 85 0 chr3 166056304 166056472 -51980686 + AluSq SINE Alu 132 311 0 2313 62 0 56 chr3 166057845 166058165 -51978993 + AluY SINE Alu 1 302 -9 673 250 28 28 chr3 166058366 166058542 -51978616 - MER45A DNA AcHobo -1 177 2 900 143 0 0 chr3 166058612 166058738 -51978420 + AluJb SINE Alu 1 126 -186 28 48 0 0 chr3 166058750 166058792 -51978366 + AT_rich Low_complexity Low_complexity 1 42 0 239 341 22 0 chr3 166058990 166059081 -51978077 + L2 LINE L2 2925 3017 -255 2232 95 10 7 chr3 166059194 166059499 -51977659 - AluSx SINE Alu -2 310 5 186 167 0 0 chr3 166059876 166059912 -51977246 + (CATA)n Simple_repeat Simple_repeat 1 36 0 4566 72 32 1 chr3 166060210 166060886 -51976272 + L1PA4 LINE L1 5456 6152 -3 270 0 0 0 chr3 166061075 166061105 -51976053 + (TG)n Simple_repeat Simple_repeat 2 31 0 1623 190 22 30 chr3 166061759 166062127 -51975031 - MLT1A1 LTR MaLR 0 365 1 1107 208 23 0 chr3 166062358 166062574 -51974584 + MER58A DNA MER1_type 1 221 -3 13429 146 28 21 chr3 166062585 166063764 -51973394 + Tigger2 DNA MER2_type 1 1170 -1548 1997 158 0 0 chr3 166063764 166064062 -51973096 + AluSx SINE Alu 1 298 -14 13429 146 28 21 chr3 166064062 166065582 -51971576 + Tigger2 DNA MER2_type 1170 2718 0 954 348 126 18 chr3 166065761 166066489 -51970669 + L3 LINE CR1 408 1214 -363 335 240 0 0 chr3 166066859 166066934 -51970224 + MER116 DNA Mariner 6 80 0 22 35 0 0 chr3 166068323 166068352 -51968806 + AT_rich Low_complexity Low_complexity 1 29 0 196 266 35 88 chr3 166068655 166068768 -51968390 - MIR3 SINE MIR 0 208 102 1099 263 64 35 chr3 166068966 166069312 -51967846 - MLT1A2 LTR MaLR -1 373 18 364 356 160 0 chr3 166069844 166070069 -51967089 - MIR SINE MIR 0 262 2 225 0 0 0 chr3 166070672 166070697 -51966461 + (TG)n Simple_repeat Simple_repeat 2 26 0 882 313 125 20 chr3 166070708 166071149 -51966009 + MLT1K LTR MaLR 33 519 -69 1068 310 113 14 chr3 166071301 166071743 -51965415 + LTR16C LTR ERVL 6 491 0 1689 25 0 0 chr3 166072411 166072611 -51964547 + L1PA2 LINE L1 5955 6154 -1 374 237 123 18 chr3 166072691 166072805 -51964353 + MER94 DNA DNA 9 134 0 702 287 48 22 chr3 166073897 166074165 -51962993 - MLT1J LTR MaLR 0 511 237 383 264 7 0 chr3 166077455 166077595 -51959563 + (TG)n Simple_repeat Simple_repeat 2 142 0 365 292 31 31 chr3 166078493 166078506 -51958652 - MIR SINE MIR -105 157 145 1616 141 8 0 chr3 166078506 166078754 -51958404 - AluSx SINE Alu -3 309 60 365 292 31 31 chr3 166078754 166078870 -51958288 - MIR SINE MIR -116 146 28 180 302 129 35 chr3 166079075 166079191 -51957967 + MIR SINE MIR 86 212 -50 1640 179 0 47 chr3 166079555 166079874 -51957284 + AluJb SINE Alu 3 306 -6 2141 96 19 44 chr3 166080196 166080561 -51956597 - L1MA4A LINE L1 -5 6298 5943 11928 132 27 3 chr3 166080562 166082437 -51954721 + Tigger1 DNA MER2_type 500 2418 0 537 317 120 10 chr3 166082756 166083065 -51954093 - MLT1L LTR MaLR -143 472 130 186 103 0 0 chr3 166083214 166083243 -51953915 + (A)n Simple_repeat Simple_repeat 1 29 0 2257 87 3 0 chr3 166083692 166083990 -51953168 + AluY SINE Alu 1 299 -12 29 0 0 0 chr3 166084846 166084875 -51952283 + AT_rich Low_complexity Low_complexity 1 29 0 1561 146 27 23 chr3 166085472 166085909 -51951249 - LTR54 LTR ERV1 0 510 1 466 241 139 7 chr3 166087367 166087504 -51949654 - MER5A DNA MER1_type -1 188 34 670 292 35 13 chr3 166088079 166088305 -51948853 - MIR SINE MIR -6 256 26 324 0 0 0 chr3 166089274 166089310 -51947848 + (TG)n Simple_repeat Simple_repeat 1 36 0 298 262 0 10 chr3 166089336 166089439 -51947719 - L1ME4a LINE L1 -240 5881 5780 322 214 66 24 chr3 166093860 166094006 -51943152 - Charlie8 DNA MER1_type -2247 170 2 240 348 53 61 chr3 166094692 166094939 -51942219 + L2 LINE L2 2707 2951 -363 1998 138 7 0 chr3 166095690 166095979 -51941179 + AluSc SINE Alu 1 291 -18 1690 163 67 28 chr3 166096048 166096409 -51940749 + THE1C LTR MaLR 1 375 0 195 279 133 85 chr3 166097371 166097536 -51939622 - L3b LINE CR1 -133 1450 1278 239 265 15 0 chr3 166097876 166097944 -51939214 - MLT1J LTR MaLR -212 299 231 2122 157 25 86 chr3 166098261 166098693 -51938465 + MLT2D LTR ERVL 1 406 -8 391 309 0 68 chr3 166100147 166100309 -51936849 + MIR SINE MIR 84 234 -28 348 324 28 14 chr3 166101795 166101940 -51935218 + MIR SINE MIR 1 147 -115 2159 117 10 0 chr3 166102305 166102605 -51934553 + AluSp SINE Alu 1 303 -10 1275 197 12 71 chr3 166102842 166103167 -51933991 + AluJo SINE Alu 3 308 -4 212 54 54 0 chr3 166103930 166103967 -51933191 + T-rich Low_complexity Low_complexity 4 42 0 611 137 0 0 chr3 166104651 166104746 -51932412 + AluSq/x SINE Alu 16 110 -203 5691 115 190 91 chr3 166104747 166106174 -51930984 + pTR5 LTR ERV1 276 2295 -143 789 231 67 82 chr3 166106582 166106924 -51930234 + MER2 DNA MER2_type 2 338 -7 721 169 158 16 chr3 166107723 166107906 -51929252 + MER3 DNA MER1_type 1 209 0 204 298 0 0 chr3 166108619 166108676 -51928482 + MIR3 SINE MIR 151 207 -1 1910 291 118 43 chr3 166109307 166110497 -51926661 - L1MEc LINE L1 -4964 1432 134 3412 143 33 18 chr3 166110497 166110865 -51926293 - L1PA15 LINE L1 -1 6164 5782 2496 57 0 10 chr3 166110865 166111179 -51925979 - AluY SINE Alu 0 311 1 3412 143 33 18 chr3 166111179 166111413 -51925745 - L1PA15 LINE L1 -383 5782 5553 1910 291 118 43 chr3 166111413 166111522 -51925636 - L1MEc LINE L1 -6262 134 35 24 53 0 0 chr3 166111887 166111925 -51925233 + AT_rich Low_complexity Low_complexity 1 38 0 1240 170 0 28 chr3 166112370 166112582 -51924576 - AluJo SINE Alu -22 290 85 279 0 0 0 chr3 166113478 166113509 -51923649 + (TG)n Simple_repeat Simple_repeat 2 32 0 180 0 0 0 chr3 166113637 166113657 -51923501 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 354 192 0 0 chr3 166113661 166113734 -51923424 - L1PB4 LINE L1 -7 6149 6077 853 86 0 0 chr3 166113763 166113880 -51923278 - MLT2B1 LTR ERVL -403 117 1 22 35 0 0 chr3 166114086 166114115 -51923043 + AT_rich Low_complexity Low_complexity 1 29 0 2054 119 7 0 chr3 166114339 166114625 -51922533 + AluSx SINE Alu 1 288 -24 21 57 0 0 chr3 166114673 166114708 -51922450 + AT_rich Low_complexity Low_complexity 1 35 0 244 181 48 29 chr3 166115134 166115239 -51921919 + (TATAA)n Simple_repeat Simple_repeat 2 108 0 22 56 0 0 chr3 166115291 166115327 -51921831 + AT_rich Low_complexity Low_complexity 1 36 0 265 264 108 54 chr3 166115494 166115642 -51921516 - MIR3 SINE MIR -10 252 97 1409 280 72 50 chr3 166115644 166116588 -51920570 - L1MC4 LINE L1 0 8042 7078 364 292 65 11 chr3 166117035 166117220 -51919938 - L1MC5 LINE L1 -48 7913 7719 2010 225 64 48 chr3 166117235 166117845 -51919313 + MLT1E3 LTR MaLR 1 620 -4 24 67 0 0 chr3 166117848 166117893 -51919265 + AT_rich Low_complexity Low_complexity 1 45 0 3595 114 14 72 chr3 166117966 166118472 -51918686 + L1MA1 LINE L1 4885 5308 -994 2758 52 35 3 chr3 166118472 166118839 -51918319 + L1PA7 LINE L1 5776 6154 0 3595 114 14 72 chr3 166118839 166119333 -51917825 + L1MA1 LINE L1 5308 5829 -473 432 314 42 29 chr3 166119329 166119638 -51917520 - L1MC4 LINE L1 -671 7371 7059 * 2908 101 14 0 chr3 166119665 166120090 -51917068 + L1MA1 LINE L1 5865 6295 -7 2019 150 10 0 chr3 166121530 166121844 -51915314 - MER7A DNA MER2_type -1 345 31 360 275 46 8 chr3 166121879 166122010 -51915148 + L1ME4a LINE L1 5974 6109 -12 274 150 0 17 chr3 166122035 166122095 -51915063 - L1MC4 LINE L1 -1340 6702 6644 21 36 0 0 chr3 166123186 166123214 -51913944 + AT_rich Low_complexity Low_complexity 1 28 0 737 174 132 7 chr3 166123907 166123940 -51913218 + AluJb SINE Alu 85 113 -199 219 69 0 0 chr3 166123940 166123969 -51913189 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 737 174 132 7 chr3 166123969 166124079 -51913079 + AluJb SINE Alu 112 246 -66 263 82 0 82 chr3 166124080 166124141 -51913017 + Charlie5 DNA MER1_type 75 130 -2482 558 214 63 0 chr3 166124145 166124304 -51912854 + Charlie5 DNA MER1_type 2416 2584 -28 1244 316 73 31 chr3 166124399 166124946 -51912212 - MLT1K LTR MaLR -16 572 3 1621 100 5 0 chr3 166125007 166125227 -51911931 + AluSq SINE Alu 88 308 -5 604 200 0 0 chr3 166125646 166125751 -51911407 - FLAM_A SINE Alu -37 105 1 545 289 116 41 chr3 166125818 166126136 -51911022 - LTR33 LTR ERVL -60 461 120 224 274 129 0 chr3 166126142 166126204 -51910954 + L2 LINE L2 3201 3270 -2 331 265 49 0 chr3 166126422 166126524 -51910634 - MIR SINE MIR -46 216 110 46 74 0 0 chr3 166126581 166126676 -51910482 + AT_rich Low_complexity Low_complexity 1 95 0 23 0 0 0 chr3 166126829 166126852 -51910306 + AT_rich Low_complexity Low_complexity 1 23 0 703 304 23 0 chr3 166127345 166127565 -51909593 + L1MC4 LINE L1 6738 6962 -1080 413 320 100 29 chr3 166127766 166128075 -51909083 + L1MC/D LINE L1 5334 5664 -2144 252 259 74 19 chr3 166128468 166128576 -51908582 - MIR SINE MIR -74 188 75 466 309 148 61 chr3 166128678 166129092 -51908066 - L2 LINE L2 -1044 2270 1789 3358 136 53 0 chr3 166129092 166129659 -51907499 + L1MB3 LINE L1 5577 6173 -10 466 309 148 61 chr3 166129659 166129830 -51907328 - L2 LINE L2 -1525 1789 1634 2101 108 0 10 chr3 166130275 166130571 -51906587 - AluSx SINE Alu -17 295 3 2019 113 3 3 chr3 166131401 166131708 -51905450 - AluSx SINE Alu 0 307 1 887 210 6 0 chr3 166133540 166133707 -51903451 + AluJb SINE Alu 137 304 -8 198 0 0 0 chr3 166133953 166133975 -51903183 + (TTG)n Simple_repeat Simple_repeat 3 24 0 46 62 0 0 chr3 166134116 166134197 -51902961 + AT_rich Low_complexity Low_complexity 1 81 0 21 95 0 0 chr3 166135329 166135392 -51901766 + AT_rich Low_complexity Low_complexity 1 63 0 325 214 109 105 chr3 166135958 166136196 -51900962 - L1MC4 LINE L1 -1 8041 7803 22 35 0 0 chr3 166136196 166136225 -51900933 + AT_rich Low_complexity Low_complexity 1 29 0 13089 21 0 0 chr3 166136225 166138518 -51898640 - L1PA3 LINE L1 -7 6148 3856 1322 32 0 0 chr3 166138518 166138675 -51898483 + L1PA3 LINE L1 3717 3873 -2273 1091 236 135 88 chr3 166138668 166138878 -51898280 - L1MC4 LINE L1 -221 7821 7622 * 864 167 54 27 chr3 166138878 166139100 -51898058 - L1MA8 LINE L1 -8 6283 6056 1091 236 135 88 chr3 166139100 166139716 -51897442 - L1MC4 LINE L1 -420 7622 6956 237 33 0 0 chr3 166139732 166139762 -51897396 + (TTCC)n Simple_repeat Simple_repeat 1 30 0 968 316 89 35 chr3 166140542 166141540 -51895618 + L2 LINE L2 2235 3295 -18 226 254 0 0 chr3 166142176 166142231 -51894927 + (TAA)n Simple_repeat Simple_repeat 2 56 0 499 222 37 44 chr3 166142273 166142408 -51894750 - MIR SINE MIR -50 212 79 23 54 0 0 chr3 166142792 166142829 -51894329 + AT_rich Low_complexity Low_complexity 1 37 0 772 295 107 50 chr3 166142999 166143477 -51893681 - L2 LINE L2 -5 3308 2804 23 86 0 0 chr3 166145654 166145712 -51891446 + AT_rich Low_complexity Low_complexity 1 58 0 33 25 0 0 chr3 166146942 166146982 -51890176 + AT_rich Low_complexity Low_complexity 1 40 0 183 274 48 24 chr3 166147507 166147591 -51889567 + L2 LINE L2 3183 3268 -4 539 207 207 7 chr3 166148586 166148726 -51888432 - MER5B DNA MER1_type -10 168 1 340 307 102 8 chr3 166149511 166149638 -51887520 + L2 LINE L2 3133 3271 -1 209 310 92 0 chr3 166151323 166151410 -51885748 + L2 LINE L2 3137 3231 -41 * 745 234 125 68 chr3 166151404 166151771 -51885387 + L2 LINE L2 2922 3309 -4 288 158 24 12 chr3 166151803 166151885 -51885273 + GA-rich Low_complexity Low_complexity 1 83 0 250 303 206 32 chr3 166152000 166152155 -51885003 + MIR3 SINE MIR 20 201 -7 21 0 0 0 chr3 166152417 166152438 -51884720 + AT_rich Low_complexity Low_complexity 1 21 0 360 59 0 0 chr3 166152847 166152898 -51884260 + (TG)n Simple_repeat Simple_repeat 2 52 0 646 175 33 0 chr3 166154567 166154687 -51882471 - FLAM_C SINE Alu -9 124 1 1048 177 141 0 chr3 166159290 166159513 -51877645 + MER33 DNA MER1_type 2 275 -2310 267 31 0 0 chr3 166159513 166159545 -51877613 + (TC)n Simple_repeat Simple_repeat 1 32 0 1048 177 141 0 chr3 166159545 166159604 -51877554 + MER33 DNA MER1_type 275 324 0 21 0 0 0 chr3 166160731 166160752 -51876406 + AT_rich Low_complexity Low_complexity 1 21 0 2264 98 7 7 chr3 166162900 166163205 -51873953 + AluSc SINE Alu 1 305 -4 24 32 0 0 chr3 166163311 166163342 -51873816 + AT_rich Low_complexity Low_complexity 1 31 0 909 275 57 0 chr3 166163712 166163941 -51873217 - MIR SINE MIR -1 261 20 5257 205 2 19 chr3 166166087 166167252 -51869906 + L1P LINE L1 1147 2291 -3855 338 0 24 0 chr3 166167562 166167604 -51869554 + (TG)n Simple_repeat Simple_repeat 2 44 0 243 342 75 48 chr3 166167604 166167791 -51869367 - MLT1L LTR MaLR -78 537 346 276 228 133 109 chr3 166167842 166168053 -51869105 - MLT1L LTR MaLR -360 255 40 23 0 0 0 chr3 166168450 166168473 -51868685 + AT_rich Low_complexity Low_complexity 1 23 0 414 57 0 0 chr3 166168620 166168673 -51868485 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 201 74 0 0 chr3 166168851 166168878 -51868280 + (CTG)n Simple_repeat Simple_repeat 1 27 0 228 191 0 24 chr3 166170683 166170725 -51866433 - MLT1L LTR MaLR -226 389 349 258 231 148 9 chr3 166171290 166171398 -51865760 - MIR SINE MIR -112 150 28 619 319 50 13 chr3 166171602 166171840 -51865318 + MIR SINE MIR 2 248 -14 218 179 26 0 chr3 166171842 166171881 -51865277 + (CCA)n Simple_repeat Simple_repeat 1 40 0 263 326 48 0 chr3 166172380 166172492 -51864666 + MIR SINE MIR 30 146 -68 522 46 0 0 chr3 166173615 166173680 -51863478 + (CA)n Simple_repeat Simple_repeat 1 65 0 461 299 103 10 chr3 166173852 166174046 -51863112 + L2 LINE L2 3102 3313 0 181 295 16 49 chr3 166174303 166174364 -51862794 + L2 LINE L2 3214 3272 0 32 26 0 0 chr3 166174505 166174544 -51862614 + AT_rich Low_complexity Low_complexity 1 39 0 480 94 0 0 chr3 166174944 166175008 -51862150 + AluSg SINE Alu 33 96 -214 805 206 45 63 chr3 166175720 166175943 -51861215 - MER20 DNA MER1_type 0 219 1 361 322 132 24 chr3 166176956 166177161 -51859997 + MIR SINE MIR 11 237 -25 409 306 55 45 chr3 166177925 166178124 -51859034 - MIR SINE MIR -15 247 47 504 322 166 15 chr3 166178972 166179304 -51857854 + L3 LINE CR1 1069 1450 -127 187 290 87 0 chr3 166179354 166179423 -51857735 - MIR SINE MIR -76 132 58 220 217 22 0 chr3 166179533 166179579 -51857579 + L2 LINE L2 3224 3270 -2 1563 201 44 85 chr3 166180332 166180859 -51856299 + MLT1D LTR MaLR 1 505 0 1652 248 94 65 chr3 166180978 166181284 -51855874 - MER97b DNA MER1_type? -332 721 425 1981 149 0 7 chr3 166181284 166181580 -51855578 + AluSx SINE Alu 1 294 -18 1652 248 94 65 chr3 166181580 166181963 -51855195 - MER97b DNA MER1_type? -628 425 12 189 272 65 65 chr3 166183057 166183149 -51854009 - MIR3 SINE MIR -14 194 103 225 0 0 0 chr3 166183372 166183397 -51853761 + (T)n Simple_repeat Simple_repeat 1 25 0 374 229 0 0 chr3 166183550 166183620 -51853538 - MER5A DNA MER1_type -106 83 14 364 344 39 6 chr3 166184232 166184412 -51852746 - MER5A DNA MER1_type -2 187 2 240 281 16 16 chr3 166184421 166184485 -51852673 - MER5A DNA MER1_type -3 186 123 2201 181 71 8 chr3 166185224 166185705 -51851453 - L1MB8 LINE L1 -1 6177 5667 393 342 170 26 chr3 166185847 166186353 -51850805 + L2 LINE L2 2135 2713 -601 352 253 0 42 chr3 166187671 166187766 -51849392 - MER45C DNA AcHobo -740 213 123 8798 20 0 0 chr3 166188069 166189474 -51847684 - L1P2 LINE L1 -397 5758 4354 429 18 18 0 chr3 166189473 166189529 -51847629 + L1P2 LINE L1 4294 4350 -1796 * 686 235 37 0 chr3 166191046 166191208 -51845950 - MER69A DNA AcHobo -9 168 1 390 295 30 60 chr3 166191316 166191482 -51845676 - MER5B DNA MER1_type -17 161 1 338 287 138 12 chr3 166191556 166191723 -51845435 - MIR SINE MIR -39 223 36 320 318 19 9 chr3 166192254 166192361 -51844797 + MER5C DNA MER1_type 12 119 -205 7720 184 37 23 chr3 166192396 166193878 -51843280 + L1M1 LINE L1 14 1516 -6049 456 244 125 18 chr3 166193981 166194149 -51843009 - L1MC4 LINE L1 -920 7122 6937 4457 32 0 0 chr3 166195295 166195825 -51841333 - L1P LINE L1 -2131 4015 3486 2096 141 3 3 chr3 166196007 166196319 -51840839 + AluSx SINE Alu 1 312 0 255 321 0 36 chr3 166196327 166196411 -51840747 + L2 LINE L2 3192 3272 0 2080 118 0 21 chr3 166196547 166196877 -51840281 + AluSq SINE Alu 1 324 0 301 275 199 0 chr3 166197646 166197777 -51839381 + MIR SINE MIR 106 262 0 226 358 12 12 chr3 166197812 166197893 -51839265 + MIR SINE MIR 20 100 -162 2019 101 17 7 chr3 166197895 166198182 -51838976 - AluSc SINE Alu -12 297 8 1440 210 3 16 chr3 166199440 166199745 -51837413 + AluJb SINE Alu 1 301 -11 184 359 0 0 chr3 166199918 166199982 -51837176 + L2 LINE L2 3245 3308 -5 555 250 62 36 chr3 166199992 166200184 -51836974 - MIR SINE MIR -1 261 65 634 224 179 6 chr3 166200293 166200472 -51836686 + MER63A DNA MER1_type 1 210 0 1614 139 23 132 chr3 166201041 166201428 -51835730 + MER7A DNA MER2_type 2 344 -2 23 0 0 0 chr3 166201460 166201483 -51835675 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr3 166201771 166201797 -51835361 + AT_rich Low_complexity Low_complexity 1 26 0 1133 241 40 15 chr3 166201979 166202303 -51834855 + L1ME3A LINE L1 5837 6168 -2 293 310 65 41 chr3 166202397 166202581 -51834577 - MIR SINE MIR -1 261 74 365 305 86 0 chr3 166203343 166203471 -51833687 - MIR SINE MIR -62 200 62 216 111 0 0 chr3 166204546 166204582 -51832576 + (T)n Simple_repeat Simple_repeat 1 36 0 21 57 0 0 chr3 166206118 166206153 -51831005 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr3 166206772 166206801 -51830357 + AT_rich Low_complexity Low_complexity 1 29 0 332 341 36 14 chr3 166207056 166207194 -51829964 + MIR SINE MIR 7 147 -115 183 42 0 0 chr3 166208666 166208690 -51828468 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 669 332 37 12 chr3 166209777 166210018 -51827140 + MIR SINE MIR 6 252 -10 2125 125 3 0 chr3 166210206 166210502 -51826656 + AluSx SINE Alu 1 297 -15 210 189 0 19 chr3 166210850 166210903 -51826255 + A-rich Low_complexity Low_complexity 1 52 0 285 262 89 83 chr3 166211014 166211182 -51825976 + MLT1J LTR MaLR 232 400 -111 21 0 0 0 chr3 166211987 166212008 -51825150 + AT_rich Low_complexity Low_complexity 1 21 0 1845 156 14 0 chr3 166213195 166213484 -51823674 + AluSx SINE Alu 1 293 -19 21 36 0 0 chr3 166213758 166213786 -51823372 + AT_rich Low_complexity Low_complexity 1 28 0 182 114 0 29 chr3 166213946 166213981 -51823177 + (GAA)n Simple_repeat Simple_repeat 2 35 0 224 30 30 0 chr3 166214912 166214945 -51822213 + (GA)n Simple_repeat Simple_repeat 1 34 0 198 0 0 0 chr3 166214945 166214967 -51822191 + (TG)n Simple_repeat Simple_repeat 2 23 0 2202 107 3 3 chr3 166216138 166216436 -51820722 + AluSp SINE Alu 1 298 -15 400 324 87 23 chr3 166217235 166217454 -51819704 - MIR SINE MIR -13 249 17 2290 84 0 7 chr3 166217490 166217786 -51819372 + AluSg SINE Alu 1 294 -16 224 318 12 0 chr3 166218265 166218350 -51818808 - MIR SINE MIR -2 260 175 2669 3 0 7 chr3 166218600 166218900 -51818258 - AluYa5 SINE Alu -9 302 5 252 326 58 0 chr3 166219884 166219985 -51817173 - MIR SINE MIR -77 131 42 21 0 0 0 chr3 166220673 166220694 -51816464 + AT_rich Low_complexity Low_complexity 1 21 0 183 333 211 32 chr3 166220735 166220891 -51816267 - L2 LINE L2 -12 3260 3077 340 305 28 68 chr3 166221753 166221930 -51815228 - MIR SINE MIR -56 206 37 255 309 24 24 chr3 166223114 166223198 -51813960 - L2 LINE L2 -7 3306 3223 25 0 0 0 chr3 166223293 166223318 -51813840 + AT_rich Low_complexity Low_complexity 1 25 0 405 97 83 0 chr3 166225165 166225237 -51811921 - MADE1 DNA Mariner 0 80 3 313 285 42 85 chr3 166225965 166226130 -51811028 + MIR SINE MIR 32 189 -73 1590 116 11 54 chr3 166226351 166226627 -51810531 - AluSg SINE Alu -46 264 1 2124 98 3 11 chr3 166226632 166226917 -51810241 - AluSg SINE Alu -17 293 11 22 0 0 0 chr3 166231260 166231282 -51805876 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr3 166231983 166232013 -51805145 + AT_rich Low_complexity Low_complexity 1 30 0 1380 153 0 5 chr3 166233829 166234038 -51803120 - AluJo SINE Alu -100 212 5 24 0 0 0 chr3 166234383 166234407 -51802751 + AT_rich Low_complexity Low_complexity 1 24 0 364 144 28 56 chr3 166234410 166234590 -51802568 + (TTATA)n Simple_repeat Simple_repeat 4 178 0 * 448 143 71 6 chr3 166234512 166234715 -51802443 + (TA)n Simple_repeat Simple_repeat 1 216 0 2308 68 14 0 chr3 166235056 166235348 -51801810 + AluY SINE Alu 1 296 -15 21 0 0 0 chr3 166235397 166235418 -51801740 + AT_rich Low_complexity Low_complexity 1 21 0 330 291 170 28 chr3 166235620 166235761 -51801397 - MER5A DNA MER1_type -3 186 26 25 0 0 0 chr3 166239408 166239433 -51797725 + AT_rich Low_complexity Low_complexity 1 25 0 333 329 13 20 chr3 166239681 166239830 -51797328 - L2 LINE L2 -1 3312 3165 1110 186 0 48 chr3 166239891 166240122 -51797036 - AluJo SINE Alu -8 304 85 27 29 0 0 chr3 166240858 166240892 -51796266 + AT_rich Low_complexity Low_complexity 1 34 0 1897 147 7 0 chr3 166240893 166241185 -51795973 - AluJo SINE Alu -18 294 1 2455 68 0 3 chr3 166242394 166242702 -51794456 - AluY SINE Alu -4 307 1 195 269 0 90 chr3 166243629 166243707 -51793451 - L2 LINE L2 -1 3271 3201 298 328 0 34 chr3 166243816 166243935 -51793223 - L2 LINE L2 -234 3038 2924 299 340 104 12 chr3 166244045 166244304 -51792854 - L2 LINE L2 -1304 2010 1728 261 0 0 0 chr3 166244791 166244820 -51792338 + (TG)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr3 166245512 166245533 -51791625 + AT_rich Low_complexity Low_complexity 1 21 0 1150 184 8 83 chr3 166246938 166247204 -51789954 + AluJb SINE Alu 43 288 -24 369 67 76 9 chr3 166247204 166247309 -51789849 + (TA)n Simple_repeat Simple_repeat 1 112 0 816 226 75 0 chr3 166247745 166247944 -51789214 - AluJo SINE Alu -92 220 7 1708 103 130 40 chr3 166248170 166248471 -51788687 + MER44D DNA MER2_type 1 598 -11 203 239 15 0 chr3 166248620 166248687 -51788471 + CT-rich Low_complexity Low_complexity 1 68 0 264 59 0 0 chr3 166248736 166248770 -51788388 + (CA)n Simple_repeat Simple_repeat 2 35 0 225 0 0 0 chr3 166249242 166249267 -51787891 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1937 106 29 7 chr3 166249267 166249542 -51787616 - AluSq SINE Alu -32 281 1 414 0 0 0 chr3 166250243 166250289 -51786869 + (TG)n Simple_repeat Simple_repeat 1 46 0 633 263 73 44 chr3 166251052 166251257 -51785901 + MIR SINE MIR 2 212 -50 715 274 11 11 chr3 166251466 166251645 -51785513 + MIR SINE MIR 84 262 0 189 94 0 0 chr3 166252566 166252598 -51784560 + (CTG)n Simple_repeat Simple_repeat 2 33 0 244 247 123 0 chr3 166253393 166253474 -51783684 - MER103 DNA DNA -68 98 8 345 291 29 19 chr3 166253537 166253640 -51783518 - L2 LINE L2 -11 3302 3199 21 0 0 0 chr3 166253894 166253915 -51783243 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 166254013 166254034 -51783124 + AT_rich Low_complexity Low_complexity 1 21 0 2028 131 6 26 chr3 166254884 166255197 -51781961 + AluSx SINE Alu 1 307 -5 232 283 19 19 chr3 166255221 166255327 -51781831 + CT-rich Low_complexity Low_complexity 5 110 0 21 36 0 0 chr3 166255410 166255438 -51781720 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 166256809 166256830 -51780328 + AT_rich Low_complexity Low_complexity 1 21 0 1272 167 68 68 chr3 166257574 166257867 -51779291 + AluJo SINE Alu 1 293 -19 1168 121 3 1 chr3 166458906 166460120 -51577038 - ALR/Alpha Satellite centromeric -1 1216 1 1153 127 8 1 chr3 166460223 166461796 -51575362 - ALR/Alpha Satellite centromeric 0 1584 1 465 103 0 0 chr3 166462052 166462120 -51575038 + (TA)n Simple_repeat Simple_repeat 2 69 0 576 330 3 3 chr3 166462628 166462943 -51574215 - L1M4 LINE L1 -3483 2663 2349 998 106 14 17 chr3 166463018 166463758 -51573400 + HSATII Satellite Satellite 1 738 -99 1005 62 0 50 chr3 166463785 166463964 -51573194 + HSATII Satellite Satellite 1 170 0 716 152 19 0 chr3 166463996 166464154 -51573004 + HSATII Satellite Satellite 10 170 0 1043 127 2 6 chr3 166464178 166464651 -51572507 + HSATII Satellite Satellite 1 471 -67 887 121 0 17 chr3 166464674 166464847 -51572311 + HSATII Satellite Satellite 1 170 0 225 314 64 16 chr3 166464873 166465061 -51572097 - SST1 Satellite centromeric -1366 197 1 233 226 16 0 chr3 166465797 166465859 -51571299 + GA-rich Low_complexity Low_complexity 1 63 0 321 109 0 0 chr3 166465859 166465914 -51571244 + (CA)n Simple_repeat Simple_repeat 2 56 0 668 249 58 62 chr3 166465918 166466417 -51570741 - SST1 Satellite centromeric -1 1562 1066 836 35 0 43 chr3 166466422 166466537 -51570621 + L1PA2 LINE L1 6046 6155 0 21 0 0 0 chr3 166466537 166466558 -51570600 + AT_rich Low_complexity Low_complexity 1 21 0 315 0 0 0 chr3 166466578 166466613 -51570545 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 234 81 0 0 chr3 166466809 166466846 -51570312 + (CTGGGG)n Simple_repeat Simple_repeat 3 39 0 1176 137 3 0 chr3 166466973 166472595 -51564563 + ALR/Alpha Satellite centromeric 1 5635 -59 396 261 84 40 chr3 166472612 166472861 -51564297 - SST1 Satellite centromeric -1303 260 1 258 210 16 0 chr3 166473597 166473659 -51563499 + GA-rich Low_complexity Low_complexity 1 63 0 357 102 0 0 chr3 166473659 166473718 -51563440 + (CA)n Simple_repeat Simple_repeat 2 60 0 1379 265 52 73 chr3 166473722 166474216 -51562942 - SST1 Satellite centromeric -1 1562 1059 817 87 9 0 chr3 166474216 166474331 -51562827 + L1PA2 LINE L1 6035 6150 -5 1379 265 52 73 chr3 166474331 166474386 -51562772 - SST1 Satellite centromeric -504 1059 1004 342 0 0 0 chr3 166474386 166474424 -51562734 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1379 265 52 73 chr3 166474424 166474997 -51562161 - SST1 Satellite centromeric -559 1004 462 1328 118 4 1 chr3 166475152 166482286 -51554872 - ALR/Alpha Satellite centromeric 0 15846 8736 5635 41 0 0 chr3 166482286 166482963 -51554195 + L1PA3 LINE L1 5479 6155 0 1328 118 4 1 chr3 166482963 166490949 -51546209 - ALR/Alpha Satellite centromeric -7110 8736 1 4525 33 0 0 chr3 166490949 166491528 -51545630 - L1P LINE L1 -843 5303 4725 3762 35 4 0 chr3 166491528 166491983 -51545175 + L1PA2 LINE L1 5698 6155 0 1280 129 4 1 chr3 166491983 166509258 -51527900 - ALR/Alpha Satellite centromeric 0 17325 1 31839 56 50 2 chr3 166509360 166513504 -51523654 - L1P LINE L1 -1803 4343 2 1227 131 2 0 chr3 166513505 166515227 -51521931 - ALR/Alpha Satellite centromeric 0 1725 1 10656 44 1 1 chr3 166515234 166517326 -51519832 - L1PA3 LINE L1 0 6155 4066 1340 131 5 1 chr3 166517426 166525200 -51511958 - ALR/Alpha Satellite centromeric 0 7803 1 39889 57 25 2 chr3 166525206 166531215 -51505943 - L1PA3 LINE L1 -1 6154 1 1231 139 4 0 chr3 166531218 166540077 -51497081 - ALR/Alpha Satellite centromeric 0 8888 1 9137 45 1 2 chr3 166540177 166541319 -51495839 - L1P LINE L1 -1458 4688 3548 1190 155 4 2 chr3 166541421 166544918 -51492240 - ALR/Alpha Satellite centromeric 0 3503 1 7205 50 1 0 chr3 166545022 166546467 -51490691 + L1PA2 LINE L1 4709 6155 0 1340 116 2 1 chr3 166546467 166549880 -51487278 - ALR/Alpha Satellite centromeric 0 3416 1 28684 45 2 1 chr3 166549980 166554473 -51482685 + L1PA3 LINE L1 1773 6155 0 1141 160 3 3 chr3 166554481 166565219 -51471939 + ALR/Alpha Satellite centromeric 1 10740 0 1203 160 4 1 chr3 166565233 166572783 -51464375 + ALR/Alpha Satellite centromeric 1 7568 -6 1206 155 3 2 chr3 166572894 166581182 -51455976 + ALR/Alpha Satellite centromeric 1 8293 -26 1218 151 2 1 chr3 166581282 166586920 -51450238 + ALR/Alpha Satellite centromeric 1 5643 -32 2070 33 15 0 chr3 166587020 166587293 -51449865 + L1P LINE L1 5027 5303 -843 1389 157 3 1 chr3 166587293 166602566 -51434592 + ALR/Alpha Satellite centromeric 1 15305 -108 10378 84 87 5 chr3 166602567 166604057 -51433101 + L1P LINE L1 1 1613 -4533 552 212 44 22 chr3 166704094 166704231 -51332927 + MIR SINE MIR 65 204 -58 184 359 0 0 chr3 166704296 166704360 -51332798 - L2 LINE L2 -5 3308 3245 22 80 0 0 chr3 166704918 166704968 -51332190 + AT_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr3 166705110 166705133 -51332025 + AT_rich Low_complexity Low_complexity 1 23 0 313 270 38 79 chr3 166705229 166705547 -51331611 - L1MC5 LINE L1 -54 7907 7603 290 203 31 0 chr3 166705588 166705652 -51331506 - L1MC5 LINE L1 -559 7402 7337 297 237 106 45 chr3 166705858 166706056 -51331102 - L1MC5 LINE L1 -741 7220 7011 1900 129 3 24 chr3 166706150 166706478 -51330680 - AluSq SINE Alu 0 324 3 22 35 0 0 chr3 166706487 166706516 -51330642 + AT_rich Low_complexity Low_complexity 1 29 0 645 216 0 22 chr3 166706814 166706953 -51330205 + FLAM_A SINE Alu 6 141 -1 233 248 136 75 chr3 166707862 166708076 -51329082 + L1MC5 LINE L1 7687 7913 -48 4046 118 11 28 chr3 166708174 166708811 -51328347 + L1P3 LINE L1 2 627 -5834 21 0 0 0 chr3 166709830 166709851 -51327307 + AT_rich Low_complexity Low_complexity 1 21 0 2229 100 3 3 chr3 166710164 166710464 -51326694 + AluSx SINE Alu 1 300 -12 6235 179 8 4 chr3 166710745 166712741 -51324417 - L1PA15 LINE L1 -6 6159 4150 331 286 0 0 chr3 166712954 166713045 -51324113 - MIR SINE MIR -74 188 98 237 269 64 0 chr3 166714166 166714244 -51322914 + MIR3 SINE MIR 111 193 -15 1403 30 0 0 chr3 166717450 166717618 -51319540 - L1HS LINE L1 0 6155 5988 306 314 35 0 chr3 166717671 166717757 -51319401 + MARNA DNA Mariner 440 528 -58 228 284 102 17 chr3 166717807 166717983 -51319175 - AluSq SINE Alu -7 296 106 258 277 36 0 chr3 166718767 166718850 -51318308 + CT-rich Low_complexity Low_complexity 2 87 0 207 204 0 0 chr3 166718855 166718904 -51318254 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 403 327 48 29 chr3 166719150 166719358 -51317800 - MIR SINE MIR -14 248 37 359 323 79 0 chr3 166720241 166720405 -51316753 + MIR SINE MIR 35 211 -51 1108 191 23 70 chr3 166721047 166721444 -51315714 - L1PA7 LINE L1 -8 6146 5769 965 206 9 46 chr3 166723166 166723385 -51313773 + MER20 DNA MER1_type 4 214 -5 200 225 0 0 chr3 166723594 166723634 -51313524 + (TATATG)n Simple_repeat Simple_repeat 1 40 0 26 0 0 0 chr3 166723702 166723728 -51313430 + AT_rich Low_complexity Low_complexity 1 26 0 1969 106 29 7 chr3 166726334 166726609 -51310549 + AluSq SINE Alu 1 281 -32 225 0 0 0 chr3 166726609 166726634 -51310524 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 264 59 0 0 chr3 166727100 166727134 -51310024 + (TG)n Simple_repeat Simple_repeat 2 35 0 203 239 15 0 chr3 166727183 166727250 -51309908 + GA-rich Low_complexity Low_complexity 1 68 0 1672 106 130 40 chr3 166727399 166727700 -51309458 - MER44D DNA MER2_type -11 598 1 830 226 75 0 chr3 166727926 166728125 -51309033 + AluJo SINE Alu 7 220 -92 369 67 76 9 chr3 166728561 166728666 -51308492 + (TA)n Simple_repeat Simple_repeat 1 112 0 1172 184 8 83 chr3 166728666 166728932 -51308226 - AluJb SINE Alu -24 288 43 625 263 73 44 chr3 166730669 166730874 -51306284 + MIR SINE MIR 2 212 -50 715 274 11 11 chr3 166731083 166731262 -51305896 + MIR SINE MIR 84 262 0 189 94 0 0 chr3 166732183 166732215 -51304943 + (CTG)n Simple_repeat Simple_repeat 2 33 0 242 247 123 0 chr3 166733010 166733091 -51304067 - MER103 DNA DNA -68 98 8 346 291 29 19 chr3 166733154 166733257 -51303901 - L2 LINE L2 -11 3302 3199 21 0 0 0 chr3 166733511 166733532 -51303626 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 166733630 166733651 -51303507 + AT_rich Low_complexity Low_complexity 1 21 0 2058 131 6 26 chr3 166734501 166734814 -51302344 + AluSx SINE Alu 1 307 -5 232 283 19 19 chr3 166734838 166734944 -51302214 + CT-rich Low_complexity Low_complexity 5 110 0 21 36 0 0 chr3 166735027 166735055 -51302103 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 166736426 166736447 -51300711 + AT_rich Low_complexity Low_complexity 1 21 0 1272 178 68 65 chr3 166737190 166737482 -51299676 + AluJo SINE Alu 1 293 -19 464 200 181 19 chr3 166739156 166739311 -51297847 - MIR SINE MIR -57 205 26 405 291 75 45 chr3 166739433 166739632 -51297526 + MIR SINE MIR 57 261 -1 235 309 44 0 chr3 166739628 166739696 -51297462 - MIR SINE MIR -155 107 37 * 306 0 0 0 chr3 166739715 166739749 -51297409 + (CA)n Simple_repeat Simple_repeat 2 35 0 199 331 80 31 chr3 166739925 166740088 -51297070 + MIR SINE MIR 82 252 -10 302 331 71 8 chr3 166740569 166740696 -51296462 + L2 LINE L2 3136 3270 -2 852 239 57 14 chr3 166742880 166743089 -51294069 + MIR SINE MIR 4 221 -41 198 0 0 0 chr3 166743105 166743127 -51294031 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 24 0 0 0 chr3 166744036 166744060 -51293098 + AT_rich Low_complexity Low_complexity 1 24 0 832 156 0 0 chr3 166744060 166744182 -51292976 + FLAM_C SINE Alu 3 124 -19 21 0 0 0 chr3 166745447 166745468 -51291690 + AT_rich Low_complexity Low_complexity 1 21 0 289 262 89 83 chr3 166746273 166746441 -51290717 - MLT1J LTR MaLR -111 400 232 210 189 0 19 chr3 166746552 166746605 -51290553 + T-rich Low_complexity Low_complexity 1 52 0 2125 125 3 0 chr3 166746953 166747249 -51289909 - AluSx SINE Alu -15 297 1 669 332 37 12 chr3 166747437 166747678 -51289480 - MIR SINE MIR -10 252 6 2327 84 0 7 chr3 166749194 166749490 -51287668 - AluSg SINE Alu -16 294 1 398 324 87 23 chr3 166749526 166749745 -51287413 + MIR SINE MIR 17 249 -13 2233 107 3 3 chr3 166750544 166750842 -51286316 - AluSp SINE Alu -15 298 1 198 0 0 0 chr3 166752013 166752035 -51285123 + (CA)n Simple_repeat Simple_repeat 2 23 0 242 29 29 0 chr3 166752035 166752070 -51285088 + (TC)n Simple_repeat Simple_repeat 1 36 0 182 114 0 29 chr3 166753000 166753035 -51284123 + (TTC)n Simple_repeat Simple_repeat 2 35 0 21 36 0 0 chr3 166753195 166753223 -51283935 + AT_rich Low_complexity Low_complexity 1 28 0 1873 156 14 0 chr3 166753497 166753786 -51283372 - AluSx SINE Alu -19 293 1 189 272 65 65 chr3 166755467 166755559 -51281599 - MIR3 SINE MIR -14 194 103 198 0 0 0 chr3 166755783 166755805 -51281353 + (T)n Simple_repeat Simple_repeat 1 22 0 946 154 62 0 chr3 166755827 166756035 -51281123 + MER63 DNA MER1_type 44 264 -797 227 298 99 75 chr3 166756153 166756314 -51280844 + L2 LINE L2 3146 3310 -3 195 139 0 0 chr3 166756842 166756878 -51280280 + (T)n Simple_repeat Simple_repeat 1 36 0 21 57 0 0 chr3 166758413 166758448 -51278710 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr3 166759314 166759349 -51277809 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 166759593 166759616 -51277542 + AT_rich Low_complexity Low_complexity 1 23 0 1614 139 23 132 chr3 166759648 166760035 -51277123 - MER7A DNA MER2_type -2 344 2 619 229 179 6 chr3 166760604 166760783 -51276375 - MER63A DNA MER1_type 0 210 1 556 250 62 36 chr3 166760892 166761084 -51276074 + MIR SINE MIR 65 261 -1 187 359 0 0 chr3 166761094 166761158 -51276000 - L2 LINE L2 -5 3308 3245 22 80 0 0 chr3 166761716 166761766 -51275392 + AT_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr3 166761909 166761932 -51275226 + AT_rich Low_complexity Low_complexity 1 23 0 338 270 38 79 chr3 166762028 166762346 -51274812 - L1MC5 LINE L1 -54 7907 7603 294 203 31 0 chr3 166762387 166762451 -51274707 - L1MC5 LINE L1 -559 7402 7337 319 237 106 45 chr3 166762657 166762855 -51274303 - L1MC5 LINE L1 -741 7220 7011 2048 118 0 21 chr3 166762949 166763279 -51273879 - AluSq SINE Alu 0 324 1 256 321 0 36 chr3 166763415 166763499 -51273659 - L2 LINE L2 0 3272 3192 2070 141 3 3 chr3 166763507 166763819 -51273339 - AluSx SINE Alu 0 312 1 21 0 0 0 chr3 166764132 166764153 -51273005 + AT_rich Low_complexity Low_complexity 1 21 0 183 42 0 0 chr3 166765608 166765632 -51271526 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 333 341 36 14 chr3 166767106 166767244 -51269914 - MIR SINE MIR -115 147 7 22 35 0 0 chr3 166767499 166767528 -51269630 + AT_rich Low_complexity Low_complexity 1 29 0 2371 95 0 0 chr3 166767805 166768110 -51269048 - AluSg SINE Alu -5 305 1 21 57 0 0 chr3 166768379 166768414 -51268744 + AT_rich Low_complexity Low_complexity 1 35 0 2651 3 0 7 chr3 166768716 166769014 -51268144 + AluYa5 SINE Alu 5 300 -11 22 0 0 0 chr3 166769810 166769832 -51267326 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr3 166770533 166770563 -51266595 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 166773081 166773102 -51264056 + AT_rich Low_complexity Low_complexity 1 21 0 681 138 18 0 chr3 166773113 166773222 -51263936 + FLAM_C SINE Alu 14 124 -19 21 0 0 0 chr3 166773476 166773497 -51263661 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 166773554 166773576 -51263582 + AT_rich Low_complexity Low_complexity 1 22 0 189 74 0 0 chr3 166775955 166775982 -51261176 + (TG)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr3 166777009 166777032 -51260126 + AT_rich Low_complexity Low_complexity 1 23 0 473 356 47 8 chr3 166777833 166778069 -51259089 + MIR SINE MIR 18 262 0 1277 209 4 8 chr3 166780406 166780669 -51256489 + AluJb SINE Alu 34 295 -17 197 297 27 40 chr3 166780970 166781044 -51256114 - MIR SINE MIR -97 165 93 402 41 0 0 chr3 166781081 166781130 -51256028 + U5 snRNA snRNA 3 51 -65 397 213 13 0 chr3 166781461 166781536 -51255622 + MIR SINE MIR 150 225 -37 21 0 0 0 chr3 166782426 166782447 -51254711 + AT_rich Low_complexity Low_complexity 1 21 0 1925 116 20 27 chr3 166782683 166782976 -51254182 - AluSg SINE Alu -19 291 1 239 0 0 31 chr3 166783049 166783081 -51254077 + (TG)n Simple_repeat Simple_repeat 2 32 0 204 336 51 67 chr3 166783459 166783624 -51253534 + MIR SINE MIR 40 199 -62 213 211 0 0 chr3 166784193 166784245 -51252913 + (TG)n Simple_repeat Simple_repeat 2 53 0 276 30 0 0 chr3 166784955 166784988 -51252170 + (TTA)n Simple_repeat Simple_repeat 2 34 0 869 110 0 0 chr3 166784992 166785110 -51252048 - FLAM_C SINE Alu -15 118 1 23 0 0 0 chr3 166785515 166785538 -51251620 + AT_rich Low_complexity Low_complexity 1 23 0 709 273 14 10 chr3 166785611 166785820 -51251338 + MER63A DNA MER1_type 1 210 0 347 232 146 13 chr3 166786889 166787040 -51250118 - L1MC4 LINE L1 -1 8041 7871 245 235 0 0 chr3 166787132 166787183 -51249975 - L2 LINE L2 0 3313 3263 1092 174 33 24 chr3 166788741 166788954 -51248204 - MER20 DNA MER1_type -1 218 4 24 67 0 0 chr3 166789374 166789419 -51247739 + AT_rich Low_complexity Low_complexity 1 45 0 318 305 72 54 chr3 166789796 166789963 -51247195 - MIR SINE MIR -12 250 81 233 325 12 12 chr3 166792216 166792296 -51244862 + MIR3 SINE MIR 108 187 -21 30166 117 16 59 chr3 166793243 166797517 -51239641 - L1PA7 LINE L1 -5 6149 2257 2078 122 7 0 chr3 166797517 166797812 -51239346 + AluSp SINE Alu 2 298 -15 30166 117 16 59 chr3 166797812 166799966 -51237192 - L1PA7 LINE L1 -3897 2257 12 252 248 136 75 chr3 166800072 166800286 -51236872 - L1MC5 LINE L1 -48 7913 7687 634 216 0 22 chr3 166801195 166801334 -51235824 - FLAM_A SINE Alu -1 141 6 22 35 0 0 chr3 166801632 166801661 -51235497 + AT_rich Low_complexity Low_complexity 1 29 0 699 108 10 0 chr3 166801670 166801772 -51235386 + AluJb SINE Alu 3 105 -207 366 197 0 14 chr3 166801772 166801843 -51235315 - L1 LINE L1 -2566 3580 3511 986 180 6 16 chr3 166801850 166802033 -51235125 + AluJb SINE Alu 115 295 -17 270 176 0 0 chr3 166802982 166803033 -51234125 + (CA)n Simple_repeat Simple_repeat 2 52 0 337 351 122 5 chr3 166803587 166803792 -51233366 + MIR SINE MIR 34 262 0 1046 215 0 5 chr3 166804029 166804238 -51232920 - MER6B DNA MER2_type -1 209 2 1310 194 54 43 chr3 166804255 166804534 -51232624 + AluJo SINE Alu 1 282 -30 1531 220 3 0 chr3 166804916 166805216 -51231942 - AluJb SINE Alu -11 301 1 208 139 0 0 chr3 166807567 166807603 -51229555 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 23 0 0 0 chr3 166807652 166807675 -51229483 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr3 166812769 166812793 -51224365 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr3 166813955 166813987 -51223171 + AT_rich Low_complexity Low_complexity 1 32 0 236 300 0 12 chr3 166813987 166814067 -51223091 + (TATG)n Simple_repeat Simple_repeat 2 80 0 2148 98 0 39 chr3 166815295 166815600 -51221558 - AluSp SINE Alu -20 293 1 1492 179 49 7 chr3 166815602 166815887 -51221271 - Tigger3(Golem) DNA MER2_type -7 3022 2726 684 250 0 13 chr3 166816415 166816571 -51220587 - FRAM SINE Alu -22 154 1 101 17 0 0 chr3 166816726 166816841 -51220317 + AT_rich Low_complexity Low_complexity 1 115 0 389 184 158 80 chr3 166817676 166817840 -51219318 - MER5B DNA MER1_type -18 171 2 288 302 108 16 chr3 166817840 166817969 -51219189 + MIR SINE MIR 34 174 -88 183 80 0 0 chr3 166817971 166817996 -51219162 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 500 161 0 0 chr3 166818003 166818084 -51219074 - L2 LINE L2 -8 3305 3225 193 224 15 60 chr3 166818153 166818220 -51218938 + MIR SINE MIR 173 236 -26 249 109 0 0 chr3 166818802 166818848 -51218310 + (TG)n Simple_repeat Simple_repeat 2 47 0 1097 209 38 0 chr3 166820138 166820348 -51216810 - MER20 DNA MER1_type -1 218 1 217 214 117 5 chr3 166822140 166822245 -51214913 + MIR SINE MIR 4 173 -89 189 0 0 0 chr3 166822284 166822305 -51214853 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2659 20 0 0 chr3 166822488 166822787 -51214371 + AluY SINE Alu 1 299 -12 6291 177 8 4 chr3 166823068 166825066 -51212092 - L1PA13 LINE L1 -4 6159 4150 336 286 0 0 chr3 166825279 166825370 -51211788 - MIR SINE MIR -74 188 98 524 268 0 8 chr3 166826453 166826580 -51210578 + MIR3 SINE MIR 69 194 -14 200 221 26 26 chr3 166826649 166826726 -51210432 + (TA)n Simple_repeat Simple_repeat 2 78 0 1601 111 0 0 chr3 166826797 166827013 -51210145 - AluSg/x SINE Alu -16 294 79 182 278 56 19 chr3 166827323 166827377 -51209781 + L2 LINE L2 3217 3272 0 456 235 140 7 chr3 166827579 166827715 -51209443 - MER5A DNA MER1_type -1 188 35 24 0 0 0 chr3 166828109 166828133 -51209025 + AT_rich Low_complexity Low_complexity 1 24 0 804 190 7 0 chr3 166828732 166828869 -51208289 + AluJb SINE Alu 147 284 -28 182 216 0 0 chr3 166829186 166829223 -51207935 - MIR SINE MIR -70 192 156 2030 129 76 12 chr3 166829299 166829641 -51207517 - THE1B LTR MaLR 0 364 1 2196 109 0 0 chr3 166830817 166831110 -51206048 - AluSx SINE Alu -17 295 3 309 323 132 0 chr3 166831221 166831478 -51205680 + L1ME4a LINE L1 5706 5996 -125 205 156 0 0 chr3 166832210 166832242 -51204916 + (CA)n Simple_repeat Simple_repeat 1 32 0 213 39 0 0 chr3 166832502 166832528 -51204630 + (CA)n Simple_repeat Simple_repeat 1 26 0 184 241 69 17 chr3 166832612 166832670 -51204488 - MER5B DNA MER1_type -111 67 7 183 157 59 59 chr3 166832935 166832986 -51204172 + L2 LINE L2 1962 2012 -1302 1290 255 105 7 chr3 166833517 166834042 -51203116 - L1MC4a LINE L1 -13 7772 7196 1917 121 25 38 chr3 166835039 166835353 -51201805 - AluSx SINE Alu -2 310 1 4920 154 81 6 chr3 166835355 166835819 -51201339 - Tigger3b DNA MER2_type -1804 1224 796 216 0 0 0 chr3 166835819 166835843 -51201315 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1783 101 25 0 chr3 166835846 166836083 -51201075 - AluSg SINE Alu -31 279 37 4920 154 81 6 chr3 166836083 166836564 -51200594 - Tigger3b DNA MER2_type -2233 795 204 297 0 0 0 chr3 166836565 166836598 -51200560 + (CA)n Simple_repeat Simple_repeat 1 33 0 655 304 49 31 chr3 166836950 166837174 -51199984 - MIR SINE MIR -22 240 13 22 0 0 0 chr3 166838166 166838188 -51198970 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 166839861 166839883 -51197275 + AT_rich Low_complexity Low_complexity 1 22 0 336 307 31 24 chr3 166840399 166840526 -51196632 + MIR SINE MIR 65 192 -70 362 250 26 66 chr3 166840576 166840728 -51196430 - L2 LINE L2 -86 3227 3082 2062 114 3 10 chr3 166840812 166841111 -51196047 - AluSc SINE Alu -12 297 1 25 51 0 0 chr3 166841274 166841313 -51195845 + AT_rich Low_complexity Low_complexity 1 39 0 3344 118 0 17 chr3 166841876 166842357 -51194801 + MER1A DNA MER1_type 57 529 0 361 323 79 0 chr3 166842362 166842526 -51194632 + MIR SINE MIR 35 211 -51 2906 80 0 0 chr3 166843161 166843551 -51193607 - L1PA7 LINE L1 -1 6153 5764 22 70 0 0 chr3 166843938 166843981 -51193177 + AT_rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chr3 166844047 166844084 -51193074 + AT_rich Low_complexity Low_complexity 1 37 0 1536 189 46 14 chr3 166845471 166845752 -51191406 - AluJb SINE Alu -18 294 5 372 318 40 8 chr3 166845961 166846087 -51191071 + MIR SINE MIR 59 188 -74 474 288 85 10 chr3 166846888 166847055 -51190103 + MER5B DNA MER1_type 11 178 0 290 271 66 72 chr3 166847466 166847647 -51189511 - MIR SINE MIR -82 180 1 2379 62 0 23 chr3 166847697 166848002 -51189156 + AluY SINE Alu 1 298 -13 477 330 50 32 chr3 166848217 166848435 -51188723 - MIR SINE MIR -33 229 8 180 231 0 0 chr3 166850632 166850684 -51186474 + (TA)n Simple_repeat Simple_repeat 1 52 0 47 53 0 0 chr3 166850692 166850767 -51186391 + AT_rich Low_complexity Low_complexity 1 75 0 236 236 42 42 chr3 166851208 166851280 -51185878 + MIR SINE MIR 5 76 -186 267 250 50 0 chr3 166851333 166851413 -51185745 + MIR SINE MIR 179 262 0 255 31 0 0 chr3 166853001 166853033 -51184125 + (TG)n Simple_repeat Simple_repeat 1 32 0 240 35 0 0 chr3 166853160 166853189 -51183969 + (T)n Simple_repeat Simple_repeat 1 29 0 2776 102 16 35 chr3 166853656 166854108 -51183050 + L1PA10 LINE L1 5716 6158 -10 961 206 9 46 chr3 166854685 166854904 -51182254 + MER20 DNA MER1_type 4 214 -5 200 225 0 0 chr3 166855113 166855153 -51182005 + (TATATG)n Simple_repeat Simple_repeat 1 40 0 26 0 0 0 chr3 166855221 166855247 -51181911 + AT_rich Low_complexity Low_complexity 1 26 0 319 63 270 0 chr3 166856555 166856618 -51180540 - MADE1 DNA Mariner 0 80 1 416 290 84 15 chr3 166856927 166857129 -51180029 - MIR SINE MIR -3 259 45 2322 89 3 0 chr3 166857193 166857497 -51179661 + AluY SINE Alu 1 305 -6 278 294 56 40 chr3 166858299 166858425 -51178733 - MER5A DNA MER1_type -22 167 40 542 163 20 0 chr3 166859910 166860008 -51177150 - FLAM_C SINE Alu -16 127 28 261 262 16 0 chr3 166863569 166863630 -51173528 + L2 LINE L2 3210 3271 -1 506 250 109 19 chr3 166864085 166864241 -51172917 - MIR SINE MIR -42 220 51 758 159 4 3 chr3 166864343 166864583 -51172575 + AluJ SINE Alu 1 300 -12 2208 113 0 0 chr3 166864666 166864967 -51172191 - AluY SINE Alu -10 301 1 29 0 0 0 chr3 166865188 166865217 -51171941 + AT_rich Low_complexity Low_complexity 1 29 0 28434 103 19 107 chr3 166865235 166865632 -51171526 + L1PA7 LINE L1 12 442 -5712 363 23 0 0 chr3 166865632 166865676 -51171482 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 28434 103 19 107 chr3 166865676 166871295 -51165863 + L1PA7 LINE L1 442 5356 -798 1908 125 52 0 chr3 166871295 166871582 -51165576 + AluY SINE Alu 3 304 -7 28434 103 19 107 chr3 166871582 166872316 -51164842 + L1PA7 LINE L1 5356 6153 -1 684 250 0 13 chr3 166873348 166873504 -51163654 - FRAM SINE Alu -22 154 1 101 17 0 0 chr3 166873659 166873774 -51163384 + AT_rich Low_complexity Low_complexity 1 115 0 389 184 158 80 chr3 166874609 166874773 -51162385 - MER5B DNA MER1_type -18 171 2 288 302 108 16 chr3 166874773 166874902 -51162256 + MIR SINE MIR 34 174 -88 183 80 0 0 chr3 166874904 166874929 -51162229 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 500 161 0 0 chr3 166874936 166875017 -51162141 - L2 LINE L2 -8 3305 3225 193 224 15 60 chr3 166875086 166875153 -51162005 + MIR SINE MIR 173 236 -26 249 109 0 0 chr3 166875735 166875781 -51161377 + (TG)n Simple_repeat Simple_repeat 2 47 0 1097 209 38 0 chr3 166877071 166877281 -51159877 - MER20 DNA MER1_type -1 218 1 217 214 117 5 chr3 166879071 166879176 -51157982 + MIR SINE MIR 4 173 -89 189 0 0 0 chr3 166879215 166879236 -51157922 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2659 20 0 0 chr3 166879419 166879718 -51157440 + AluY SINE Alu 1 299 -12 6291 177 8 4 chr3 166879999 166881997 -51155161 - L1PA13 LINE L1 -4 6159 4150 336 286 0 0 chr3 166882210 166882301 -51154857 - MIR SINE MIR -74 188 98 524 268 0 8 chr3 166883384 166883511 -51153647 + MIR3 SINE MIR 69 194 -14 200 221 26 26 chr3 166883580 166883657 -51153501 + (TA)n Simple_repeat Simple_repeat 2 78 0 1609 111 0 0 chr3 166883728 166883945 -51153213 - AluSg/x SINE Alu -15 295 79 182 278 56 19 chr3 166884255 166884309 -51152849 + L2 LINE L2 3217 3272 0 456 235 140 7 chr3 166884511 166884647 -51152511 - MER5A DNA MER1_type -1 188 35 24 0 0 0 chr3 166885041 166885065 -51152093 + AT_rich Low_complexity Low_complexity 1 24 0 829 175 7 0 chr3 166885664 166885826 -51151332 + AluJb SINE Alu 147 309 0 182 216 0 0 chr3 166886118 166886155 -51151003 - MIR SINE MIR -70 192 156 2030 129 76 12 chr3 166886231 166886573 -51150585 - THE1B LTR MaLR 0 364 1 2196 109 0 0 chr3 166887749 166888042 -51149116 - AluSx SINE Alu -17 295 3 290 327 132 0 chr3 166888153 166888410 -51148748 + L1ME4a LINE L1 5706 5996 -125 205 156 0 0 chr3 166889141 166889173 -51147985 + (CA)n Simple_repeat Simple_repeat 1 32 0 213 39 0 0 chr3 166889433 166889459 -51147699 + (CA)n Simple_repeat Simple_repeat 1 26 0 180 241 69 17 chr3 166889543 166889601 -51147557 - MER5B DNA MER1_type -111 67 7 183 157 59 59 chr3 166889866 166889917 -51147241 + L2 LINE L2 1962 2012 -1302 1753 241 140 6 chr3 166890450 166890973 -51146185 - L1MC4a LINE L1 0 7808 7216 31 0 0 0 chr3 166894567 166894598 -51142560 + AT_rich Low_complexity Low_complexity 1 31 0 748 118 0 0 chr3 166895223 166895333 -51141825 + HY1 scRNA scRNA 2 111 -1 2141 118 14 0 chr3 166895773 166896069 -51141089 + AluSx SINE Alu 1 300 -12 27 29 0 0 chr3 166896257 166896291 -51140867 + AT_rich Low_complexity Low_complexity 1 34 0 303 285 20 60 chr3 166896402 166896553 -51140605 - MER102a DNA MER1_type 0 330 186 273 241 30 105 chr3 166896576 166896709 -51140449 + MER91C DNA MER1_type 18 140 0 306 215 42 97 chr3 166896714 166896858 -51140300 - MER102a DNA MER1_type -162 168 33 258 277 36 0 chr3 166897328 166897411 -51139747 + CT-rich Low_complexity Low_complexity 2 87 0 207 204 0 0 chr3 166897416 166897465 -51139693 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 427 325 51 34 chr3 166897711 166897945 -51139213 - MIR SINE MIR -14 248 11 37 62 0 0 chr3 166898954 166899019 -51138139 + AT_rich Low_complexity Low_complexity 1 65 0 44 63 0 0 chr3 166903032 166903111 -51134047 + AT_rich Low_complexity Low_complexity 1 79 0 239 157 20 0 chr3 166903896 166903947 -51133211 + (TA)n Simple_repeat Simple_repeat 2 53 0 335 248 53 64 chr3 166904327 166904522 -51132636 - MIR SINE MIR -55 207 13 22 0 0 0 chr3 166905129 166905151 -51132007 + AT_rich Low_complexity Low_complexity 1 22 0 1152 199 18 5 chr3 166905579 166905800 -51131358 - MER58A DNA MER1_type 0 224 1 1948 139 10 7 chr3 166905918 166906212 -51130946 + AluJb SINE Alu 1 295 -17 295 317 37 0 chr3 166906271 166906353 -51130805 - MARNA DNA Mariner -62 524 440 1414 24 0 0 chr3 166906406 166906574 -51130584 + L1HS LINE L1 5988 6155 0 21 36 0 0 chr3 166908714 166908742 -51128416 + AT_rich Low_complexity Low_complexity 1 28 0 30 27 0 0 chr3 166909202 166909239 -51127919 + AT_rich Low_complexity Low_complexity 1 37 0 198 0 0 0 chr3 166909573 166909595 -51127563 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 207 0 0 0 chr3 166912220 166912243 -51124915 + (TG)n Simple_repeat Simple_repeat 1 23 0 248 259 182 35 chr3 166913068 166913211 -51123947 + MIR SINE MIR 13 176 -86 1688 48 10 0 chr3 166913250 166913458 -51123700 - AluY SINE Alu 0 311 102 204 280 0 53 chr3 166913497 166913572 -51123586 - MER5B DNA MER1_type -45 133 63 * 253 312 0 0 chr3 166913565 166913642 -51123516 + MIR SINE MIR 186 262 0 27 62 0 0 chr3 166914107 166914155 -51123003 + AT_rich Low_complexity Low_complexity 1 48 0 23 33 0 0 chr3 166914430 166914460 -51122698 + AT_rich Low_complexity Low_complexity 1 30 0 311 261 42 49 chr3 166914516 166914658 -51122500 + L1ME LINE L1 5645 5785 -336 26 0 0 0 chr3 166914785 166914811 -51122347 + AT_rich Low_complexity Low_complexity 1 26 0 1429 172 19 19 chr3 166915038 166915306 -51121852 - AluJo SINE Alu -6 306 39 199 258 0 30 chr3 166915489 166915555 -51121603 - L2 LINE L2 -253 3060 2997 44 63 0 0 chr3 166919525 166919604 -51117554 + AT_rich Low_complexity Low_complexity 1 79 0 239 157 20 0 chr3 166920385 166920436 -51116722 + (TA)n Simple_repeat Simple_repeat 2 53 0 389 248 54 65 chr3 166920816 166921011 -51116147 - MIR3 SINE MIR -55 207 8 22 0 0 0 chr3 166921618 166921640 -51115518 + AT_rich Low_complexity Low_complexity 1 22 0 1165 199 18 5 chr3 166922068 166922289 -51114869 - MER58A DNA MER1_type 0 224 1 1692 173 11 7 chr3 166922407 166922715 -51114443 + AluJb SINE Alu 1 309 0 182 216 0 0 chr3 166923007 166923044 -51114114 - MIR SINE MIR -70 192 156 2051 129 76 12 chr3 166923120 166923462 -51113696 - THE1B LTR MaLR 0 364 1 26 0 0 0 chr3 166924828 166924854 -51112304 + AT_rich Low_complexity Low_complexity 1 26 0 2229 105 7 0 chr3 166925011 166925307 -51111851 - AluSx SINE Alu -8 304 7 265 350 106 35 chr3 166925609 166925920 -51111238 - L2 LINE L2 -15 3257 2925 594 315 169 4 chr3 166926211 166926471 -51110687 - LTR16B LTR ERVL 0 464 162 887 299 37 7 chr3 166926619 166927023 -51110135 + L1ME3A LINE L1 5418 5833 -337 371 259 46 23 chr3 166927108 166927239 -51109919 + L1ME3A LINE L1 6007 6140 -30 387 152 30 0 chr3 166928527 166928593 -51108565 + MIR SINE MIR 195 262 0 2065 123 27 0 chr3 166928971 166929271 -51107887 - AluSx SINE Alu -2 310 3 267 270 45 45 chr3 166930081 166930170 -51106988 + MIR SINE MIR 68 156 -106 2169 137 27 37 chr3 166932087 166932429 -51104729 - L1PA16 LINE L1 0 6166 5827 2197 111 10 3 chr3 166932429 166932735 -51104423 - AluSg1 SINE Alu -1 308 1 2169 137 27 37 chr3 166932735 166932794 -51104364 - L1PA16 LINE L1 -339 5827 5769 220 320 13 0 chr3 166932810 166932885 -51104273 + (TA)n Simple_repeat Simple_repeat 1 76 0 13659 198 16 22 chr3 166932885 166936777 -51100381 - L1PA15-16 LINE L1 -970 5879 2037 2416 77 0 3 chr3 166936777 166937075 -51100083 - AluY SINE Alu -14 297 1 13659 198 16 22 chr3 166937075 166938255 -51098903 - L1PA15-16 LINE L1 -4812 2037 851 379 283 79 20 chr3 166938267 166938419 -51098739 - MIR SINE MIR -74 188 28 194 0 39 0 chr3 166938607 166938633 -51098525 + (TA)n Simple_repeat Simple_repeat 2 28 0 230 204 23 61 chr3 166938649 166938781 -51098377 + (TATAA)n Simple_repeat Simple_repeat 3 129 0 28 29 0 0 chr3 166938961 166938996 -51098162 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr3 166939888 166939909 -51097249 + AT_rich Low_complexity Low_complexity 1 21 0 1188 219 80 11 chr3 166940401 166940688 -51096470 + LTR52 LTR ERVL 15 321 -100 21 0 0 0 chr3 166940688 166940709 -51096449 + AT_rich Low_complexity Low_complexity 1 21 0 1962 113 11 7 chr3 166940709 166940993 -51096165 - AluSx SINE Alu -19 293 9 1806 108 65 29 chr3 166940994 166941301 -51095857 + THE1B LTR MaLR 1 318 -46 2251 131 0 3 chr3 166941477 166941790 -51095368 + AluSq SINE Alu 1 312 -1 1535 173 7 21 chr3 166942200 166942489 -51094669 + AluJo SINE Alu 7 291 -21 25 0 0 0 chr3 166942489 166942514 -51094644 + AT_rich Low_complexity Low_complexity 1 25 0 328 20 41 0 chr3 166943544 166943593 -51093565 + (TA)n Simple_repeat Simple_repeat 2 52 0 223 317 24 12 chr3 166943633 166943715 -51093443 - MIR SINE MIR -73 135 53 1253 214 36 84 chr3 166943856 166944249 -51092909 + MLT1A2 LTR MaLR 1 374 0 344 285 33 53 chr3 166944386 166944537 -51092621 + MIR SINE MIR 49 196 -66 417 333 131 28 chr3 166944730 166945189 -51091969 + L1MC4a LINE L1 5321 5826 -1982 32 26 0 0 chr3 166945364 166945403 -51091755 + AT_rich Low_complexity Low_complexity 1 39 0 2148 121 0 16 chr3 166946112 166946249 -51090909 + AluSx SINE Alu 1 139 -173 2256 103 0 7 chr3 166946249 166946549 -51090609 + AluSc SINE Alu 1 298 -11 2148 121 0 16 chr3 166946549 166946717 -51090441 + AluSx SINE Alu 139 301 -11 1456 145 0 4 chr3 166946718 166946946 -51090212 - MER65A LTR ERV1 -41 404 178 310 281 0 22 chr3 166946955 166947044 -51090114 - L1MC4 LINE L1 -1342 6700 6614 312 120 0 0 chr3 166947049 166947099 -51090059 + (CA)n Simple_repeat Simple_repeat 1 50 0 594 149 128 28 chr3 166947117 166947258 -51089900 - MER65B LTR ERV1 -375 156 2 628 251 51 89 chr3 166947852 166948363 -51088795 + L1ME LINE L1 227 721 -5349 512 203 51 0 chr3 166948365 166948503 -51088655 - L1ME LINE L1 -3350 2730 2586 493 295 48 50 chr3 166948503 166948954 -51088204 - L1ME LINE L1 -5409 661 258 316 395 5 26 chr3 166949092 166949282 -51087876 - L1ME LINE L1 -5628 442 257 23 0 0 0 chr3 166949409 166949432 -51087726 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr3 166952769 166952803 -51084355 + AT_rich Low_complexity Low_complexity 1 34 0 1910 118 150 12 chr3 166952820 166953166 -51083992 + MSTA LTR MaLR 1 394 -34 708 146 0 24 chr3 166953167 166953290 -51083868 - AluSg/x SINE Alu -6 303 184 2809 139 107 160 chr3 166953290 166954177 -51082981 - pTR5 LTR ERV1 -3 2435 1596 313 98 0 0 chr3 166954180 166954221 -51082937 - AluSp/q SINE Alu -36 267 227 2319 128 26 0 chr3 166954221 166954612 -51082546 - L1M1 LINE L1 -5079 2486 2086 19966 169 36 15 chr3 166954646 166958747 -51078411 - L1 LINE L1 -3380 4185 2 228 283 160 78 chr3 166958761 166958980 -51078178 - MIR SINE MIR -5 257 21 277 260 90 20 chr3 166959018 166959118 -51078040 + MIR SINE MIR 20 126 -82 566 247 207 52 chr3 166960108 166960509 -51076649 - MLT1J LTR MaLR -19 492 30 399 330 108 11 chr3 166961063 166961248 -51075910 - L3 LINE CR1 -1 1576 1374 1261 289 148 22 chr3 166961418 166962192 -51074966 - L2 LINE L2 -170 3143 2267 328 299 42 47 chr3 166962429 166962751 -51074407 + LTR16A LTR ERVL 61 444 -6 458 304 115 42 chr3 166964282 166964499 -51072659 + MIR SINE MIR 16 248 -14 1358 194 0 89 chr3 166964790 166965115 -51072043 + AluJb SINE Alu 1 296 -16 1516 103 0 10 chr3 166965359 166965637 -51071521 + AluSg/x SINE Alu 82 357 0 25 51 0 0 chr3 166966169 166966208 -51070950 + AT_rich Low_complexity Low_complexity 1 39 0 1860 169 0 7 chr3 166966521 166966822 -51070336 + AluJb SINE Alu 1 299 -13 302 254 0 0 chr3 166966911 166966974 -51070184 + MIR SINE MIR 190 252 -10 1872 152 7 10 chr3 166967005 166967315 -51069843 + AluSg SINE Alu 1 309 -1 278 279 126 75 chr3 166967338 166967592 -51069566 - MLT1J LTR MaLR -19 492 226 390 91 0 0 chr3 166967624 166967679 -51069479 + (CA)n Simple_repeat Simple_repeat 2 56 0 1673 205 32 47 chr3 166968029 166968472 -51068686 - MER63B DNA MER1_type 0 436 1 24 0 0 0 chr3 166969021 166969045 -51068113 + AT_rich Low_complexity Low_complexity 1 24 0 1259 275 104 14 chr3 166969148 166969592 -51067566 + L1MC4a LINE L1 5477 5960 -1848 237 289 145 20 chr3 166969873 166970025 -51067133 - LTR33 LTR ERVL -28 493 323 510 279 116 19 chr3 166970059 166970274 -51066884 - LTR33 LTR ERVL -276 245 10 1265 228 22 77 chr3 166970374 166970884 -51066274 + LTR55 LTR ERV 50 531 -17 270 0 0 0 chr3 166971234 166971264 -51065894 + (A)n Simple_repeat Simple_repeat 1 30 0 364 314 43 43 chr3 166971508 166971715 -51065443 + L1MEd LINE L1 247 453 -5666 832 316 19 13 chr3 166971720 166972037 -51065121 + L1MEd LINE L1 497 815 -5304 319 218 59 30 chr3 166972540 166972641 -51064517 + L1MC4a LINE L1 5827 5930 -1878 521 328 76 5 chr3 166972942 166973140 -51064018 + MIR SINE MIR 45 256 -6 1764 224 59 36 chr3 166974058 166974589 -51062569 - MLT1E1 LTR MaLR -2 652 1 1996 182 75 8 chr3 166974886 166975287 -51061871 - MSTA LTR MaLR 0 428 1 249 192 19 19 chr3 166975489 166975541 -51061617 - MIR SINE MIR -163 99 48 344 298 11 0 chr3 166975621 166975715 -51061443 - L2 LINE L2 -10 3262 3168 404 108 0 54 chr3 166975806 166975935 -51061223 + (TAA)n Simple_repeat Simple_repeat 1 122 0 23 0 0 0 chr3 166975985 166976008 -51061150 + AT_rich Low_complexity Low_complexity 1 23 0 275 49 24 0 chr3 166976270 166976311 -51060847 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 1676 188 26 6 chr3 166976445 166976785 -51060373 + MER7A DNA MER2_type 2 346 0 21 36 0 0 chr3 166977572 166977600 -51059558 + AT_rich Low_complexity Low_complexity 1 28 0 340 255 46 34 chr3 166978599 166978763 -51058395 + MLT1I LTR MaLR 71 236 -173 263 119 0 51 chr3 166978776 166978835 -51058323 + (TATAA)n Simple_repeat Simple_repeat 4 59 0 23 33 0 0 chr3 166978874 166978904 -51058254 + AT_rich Low_complexity Low_complexity 1 30 0 213 196 0 0 chr3 166979833 166979884 -51057274 + (TGAA)n Simple_repeat Simple_repeat 3 53 0 304 276 37 30 chr3 166980042 166980176 -51056982 - L1M4 LINE L1 -1712 4434 4300 13257 142 60 16 chr3 166980188 166980508 -51056650 - Tigger1 DNA MER2_type 0 2418 2113 2513 40 0 10 chr3 166980508 166980809 -51056349 - AluY SINE Alu -13 298 1 13257 142 60 16 chr3 166980809 166982198 -51054960 - Tigger1 DNA MER2_type -305 2113 580 2123 119 3 3 chr3 166982198 166982501 -51054657 - AluSx SINE Alu -5 307 5 13257 142 60 16 chr3 166982501 166983108 -51054050 - Tigger1 DNA MER2_type -1838 580 1 21 36 0 0 chr3 166983131 166983159 -51053999 + AT_rich Low_complexity Low_complexity 1 28 0 247 323 10 21 chr3 166983308 166983404 -51053754 + L1PB4 LINE L1 14 108 -6754 11488 166 16 6 chr3 166983413 166986340 -51050818 - L1PA13 LINE L1 -4 6810 3830 301 234 11 75 chr3 166986622 166986716 -51050442 - L1MC4 LINE L1 -1323 6719 6632 11147 207 57 21 chr3 166987088 166990794 -51046364 - L1PA13 LINE L1 -2950 3847 1 10151 218 31 65 chr3 166990802 166992828 -51044330 + L1PB4 LINE L1 69 2162 -4710 1945 149 0 29 chr3 166992828 166993144 -51044014 - AluJb SINE Alu -3 309 3 10151 218 31 65 chr3 166993144 166994307 -51042851 + L1PB4 LINE L1 2162 3363 -3509 1626 176 42 0 chr3 166994307 166994591 -51042567 - AluSx SINE Alu -16 296 1 10151 218 31 65 chr3 166994591 166997992 -51039166 + L1PB4 LINE L1 3363 6587 -285 2500 57 0 0 chr3 166997994 166998291 -51038867 - AluY SINE Alu -14 297 1 306 0 0 0 chr3 166998651 166998685 -51038473 + (T)n Simple_repeat Simple_repeat 1 34 0 3043 93 13 18 chr3 166999286 166999738 -51037420 - L1PA13 LINE L1 -4 6159 5710 325 320 127 28 chr3 167000018 167000405 -51036753 + L1M4 LINE L1 2350 2774 -3372 25 31 0 0 chr3 167000877 167000909 -51036249 + AT_rich Low_complexity Low_complexity 1 32 0 1161 201 90 38 chr3 167002194 167002483 -51034675 + MER2 DNA MER2_type 42 345 0 330 107 0 0 chr3 167002648 167002704 -51034454 - L1MA5A LINE L1 0 6297 6242 1323 250 26 19 chr3 167002914 167003330 -51033828 - L1M4 LINE L1 -921 5225 4807 537 16 0 0 chr3 167003438 167003500 -51033658 + (CA)n Simple_repeat Simple_repeat 1 62 0 259 296 92 5 chr3 167003957 167004153 -51033005 + L1M4 LINE L1 4598 4810 -1336 565 343 29 5 chr3 167004337 167004547 -51032611 + ERVL LTR ERVL 2039 2253 -3511 366 256 145 19 chr3 167004558 167004765 -51032393 + ERVL LTR ERVL 2433 2665 -2820 2120 226 60 50 chr3 167004774 167005390 -51031768 + MER92B LTR ERV1 1 622 -14 256 377 37 26 chr3 167005394 167005585 -51031573 + ERVL LTR ERVL 3992 4184 -1580 * 793 342 47 13 chr3 167005579 167005962 -51031196 + ERVL LTR ERVL 4102 4497 -988 403 250 22 11 chr3 167006150 167006242 -51030916 - MER81 DNA DNA 0 114 22 472 232 119 20 chr3 167006525 167006676 -51030482 - MIR SINE MIR -95 167 2 908 197 72 0 chr3 167006991 167007184 -51029974 + MER3 DNA MER1_type 3 209 0 279 0 0 0 chr3 167008881 167008912 -51028246 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 1808 182 20 17 chr3 167010070 167010428 -51026730 - MLT1A1 LTR MaLR -6 359 1 742 257 104 16 chr3 167010645 167010894 -51026264 - Charlie8 DNA MER1_type -2145 272 2 671 110 0 0 chr3 167011477 167011568 -51025590 - AluY SINE Alu -16 295 205 1866 192 56 14 chr3 167011568 167012068 -51025090 + pTR5 LTR ERV1 743 1263 -1175 206 213 49 0 chr3 167012010 167012071 -51025087 + C-rich Low_complexity Low_complexity 5 68 0 * 953 65 138 0 chr3 167012073 167012211 -51024947 + pTR5 LTR ERV1 1869 2025 -413 351 230 10 10 chr3 167012211 167012293 -51024865 + LTR30 LTR ERV1 544 625 -97 27473 86 37 16 chr3 167012293 167016656 -51020502 + HERV9 LTR ERV1 1 4091 -1935 341 125 0 0 chr3 167016652 167016708 -51020450 + pTR5 LTR ERV1 80 135 -2303 * 324 347 130 33 chr3 167016725 167017025 -51020133 - L3 LINE CR1 -1214 363 35 1901 117 0 89 chr3 167017276 167017592 -51019566 - AluSc SINE Alu -21 288 1 327 65 0 0 chr3 167018002 167018048 -51019110 + (CA)n Simple_repeat Simple_repeat 2 47 0 1066 153 0 18 chr3 167018188 167018351 -51018807 + AluSx SINE Alu 1 160 -152 895 197 109 48 chr3 167018354 167018684 -51018474 + L1M3 LINE L1 3662 4011 -2135 3105 209 38 47 chr3 167018688 167019741 -51017417 + L1M3 LINE L1 4423 5465 -715 231 170 0 0 chr3 167020074 167020121 -51017037 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 340 248 18 55 chr3 167020132 167020241 -51016917 - L2 LINE L2 -10 3303 3199 1408 193 8 0 chr3 167021104 167021347 -51015811 + AluJo SINE Alu 1 245 -67 407 159 0 0 chr3 167021419 167021488 -51015670 + AluJo SINE Alu 235 303 -9 572 230 0 8 chr3 167022682 167022808 -51014350 - FLAM_A SINE Alu -8 125 1 787 300 200 13 chr3 167022817 167023342 -51013816 + L2 LINE L2 2695 3309 -4 22 56 0 0 chr3 167025005 167025041 -51012117 + AT_rich Low_complexity Low_complexity 1 36 0 300 313 149 0 chr3 167025454 167025588 -51011570 - MIR SINE MIR -92 170 17 25 0 0 0 chr3 167025696 167025721 -51011437 + AT_rich Low_complexity Low_complexity 1 25 0 29 0 0 0 chr3 167027227 167027256 -51009902 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 167028759 167028780 -51008378 + AT_rich Low_complexity Low_complexity 1 21 0 1135 303 53 56 chr3 167028791 167029434 -51007724 + L1MEc LINE L1 24 667 -5729 1649 184 29 4 chr3 167029434 167029706 -51007452 + AluJb SINE Alu 1 279 -33 227 30 0 30 chr3 167029709 167029742 -51007416 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1135 303 53 56 chr3 167029742 167029939 -51007219 + L1MEc LINE L1 669 866 -5530 269 333 28 44 chr3 167029997 167030177 -51006981 - MIR SINE MIR -50 212 36 247 306 0 0 chr3 167030294 167030356 -51006802 + (TG)n Simple_repeat Simple_repeat 1 62 0 24 32 0 0 chr3 167031073 167031104 -51006054 + AT_rich Low_complexity Low_complexity 1 31 0 338 210 20 60 chr3 167031164 167031264 -51005894 - MER103 DNA DNA -11 155 60 212 313 122 27 chr3 167031445 167031592 -51005566 + MIR SINE MIR 98 258 -4 2294 122 0 3 chr3 167031735 167032046 -51005112 + AluSx SINE Alu 1 310 -2 248 405 53 4 chr3 167032663 167032890 -51004268 + MIR SINE MIR 21 258 -4 944 161 0 0 chr3 167033572 167033715 -51003443 + FLAM_C SINE Alu 1 143 0 333 100 0 0 chr3 167033771 167033821 -51003337 + (TC)n Simple_repeat Simple_repeat 2 51 0 228 35 0 0 chr3 167033821 167033850 -51003308 + (CA)n Simple_repeat Simple_repeat 1 29 0 264 263 68 30 chr3 167033853 167033986 -51003172 + MER112 DNA MER1_type 74 211 -49 305 291 58 10 chr3 167035010 167035113 -51002045 - MIR3 SINE MIR -10 198 91 836 257 5 0 chr3 167035612 167035799 -51001359 + MER5A DNA MER1_type 1 188 -1 186 370 97 19 chr3 167036904 167037058 -51000100 - L2 LINE L2 0 3272 3107 1417 167 0 13 chr3 167038081 167038309 -50998849 - AluJo SINE Alu -5 307 83 487 323 140 0 chr3 167038768 167038932 -50998226 - MER91A DNA MER1_type -3 193 7 259 290 122 0 chr3 167038937 167039044 -50998114 - MIR SINE MIR -97 165 46 292 313 18 18 chr3 167039070 167039182 -50997976 + MIR SINE MIR 124 235 -27 330 325 73 53 chr3 167040059 167040305 -50996853 - MIR SINE MIR -9 253 3 627 249 75 0 chr3 167040382 167040555 -50996603 - MIR SINE MIR -13 249 64 2076 123 3 0 chr3 167040696 167040981 -50996177 + AluSx SINE Alu 10 295 -17 1314 261 61 97 chr3 167041062 167043327 -50993831 + L1MC5 LINE L1 5699 7894 -67 196 314 27 80 chr3 167043754 167043942 -50993216 - L2 LINE L2 0 3272 3095 992 283 134 32 chr3 167044332 167044773 -50992385 - L2 LINE L2 0 3313 2828 272 296 30 30 chr3 167044794 167044926 -50992232 - MER94 DNA DNA -2 132 1 298 280 21 11 chr3 167044930 167045023 -50992135 - L2 LINE L2 -531 2783 2690 282 254 17 23 chr3 167045623 167045796 -50991362 + GA-rich Low_complexity Low_complexity 3 174 0 311 89 107 0 chr3 167045831 167045887 -50991271 - LTR67 LTR ERVL 0 557 496 261 302 74 79 chr3 167046104 167046319 -50990839 - LTR67 LTR ERVL -341 216 3 1524 194 0 47 chr3 167046395 167046694 -50990464 + AluJo SINE Alu 1 285 -27 36 0 0 0 chr3 167046694 167046730 -50990428 + AT_rich Low_complexity Low_complexity 1 36 0 638 25 12 0 chr3 167046735 167046815 -50990343 + (GAAA)n Simple_repeat Simple_repeat 4 84 0 2750 76 100 5 chr3 167047872 167048281 -50988877 + LTR7 LTR ERV1 1 448 -2 9205 175 25 27 chr3 167048283 167050907 -50986251 + HERVH LTR ERV1 1 2457 -4197 328 208 17 75 chr3 167051086 167051206 -50985952 + L1M4 LINE L1 3080 3192 -2954 4472 127 0 31 chr3 167051213 167052064 -50985094 + HERVH LTR ERV1 2171 2995 -4718 826 147 7 0 chr3 167052043 167052193 -50984965 + HERVH LTR ERV1 3140 3290 -4423 * 3501 83 0 6 chr3 167052183 167052688 -50984470 + HERVH LTR ERV1 3492 3993 -3720 * 3903 156 6 5 chr3 167052684 167053353 -50983805 + HERVH LTR ERV1 4480 5149 -2564 1321 130 19 0 chr3 167053354 167053570 -50983588 + HERVH LTR ERV1 5600 5819 -1894 2059 112 56 13 chr3 167053570 167053944 -50983214 + HERVH LTR ERV1 7324 7713 0 2829 68 98 5 chr3 167053944 167054354 -50982804 + LTR7 LTR ERV1 1 448 -2 2429 65 3 0 chr3 167054520 167054813 -50982345 - AluY SINE Alu -17 294 1 4778 86 50 5 chr3 167055463 167056124 -50981034 - LTR8 LTR ERV1 0 691 1 323 121 17 0 chr3 167056193 167056251 -50980907 + GA-rich Low_complexity Low_complexity 2 60 0 262 29 0 0 chr3 167056697 167056731 -50980427 - L1M2 LINE L1 -425 5887 5854 651 247 68 91 chr3 167057322 167057760 -50979398 + Charlie8 DNA MER1_type 63 490 -1927 1877 180 55 59 chr3 167058486 167058998 -50978160 + LTR54 LTR ERV1 1 510 0 2019 109 10 23 chr3 167059055 167059358 -50977800 - AluSx SINE Alu -13 299 1 372 202 105 9 chr3 167159564 167159678 -50877480 + L1MC5 LINE L1 7805 7929 -32 2379 62 0 0 chr3 167159999 167160290 -50876868 - AluY SINE Alu -20 291 1 256 341 34 0 chr3 167160349 167160437 -50876721 - L2 LINE L2 0 3272 3182 928 145 0 13 chr3 167161579 167161731 -50875427 + AluJb SINE Alu 1 150 -162 831 144 0 0 chr3 167162496 167162614 -50874544 + AluJb SINE Alu 1 118 -194 279 0 0 0 chr3 167164021 167164052 -50873106 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2107 120 0 0 chr3 167164056 167164374 -50872784 - AluSx SINE Alu 0 318 1 311 257 62 26 chr3 167165217 167165330 -50871828 + MIR3 SINE MIR 85 201 -7 2064 101 45 0 chr3 167165745 167166033 -50871125 + AluSp SINE Alu 1 301 -12 2213 110 0 7 chr3 167166044 167166343 -50870815 + AluSx SINE Alu 1 297 -15 470 308 104 9 chr3 167166343 167166671 -50870487 - L1M4 LINE L1 -1609 4537 4179 1734 183 3 3 chr3 167166810 167167111 -50870047 + AluJo SINE Alu 1 301 -11 248 204 0 0 chr3 167167115 167167164 -50869994 + L1 LINE L1 4909 4957 -1189 1948 129 42 0 chr3 167167164 167167285 -50869873 + AluSx SINE Alu 1 115 -197 405 0 0 0 chr3 167167285 167167330 -50869828 + (CA)n Simple_repeat Simple_repeat 2 46 0 1948 129 42 0 chr3 167167330 167167495 -50869663 + AluSx SINE Alu 115 299 -13 2549 38 3 3 chr3 167167496 167167808 -50869350 + AluY SINE Alu 3 314 0 558 202 108 0 chr3 167167809 167167938 -50869220 + MLT1A1 LTR MaLR 5 147 -218 2122 99 3 17 chr3 167167957 167168251 -50868907 + AluSx SINE Alu 20 309 -3 389 240 89 14 chr3 167168326 167168472 -50868686 - MIR SINE MIR -11 251 95 905 130 8 0 chr3 167168700 167168831 -50868327 - AluSq/x SINE Alu -181 132 1 509 244 127 26 chr3 167169159 167169388 -50867770 + MIR SINE MIR 7 258 -4 2236 95 3 0 chr3 167169388 167169672 -50867486 + AluSx SINE Alu 1 285 -27 201 333 49 8 chr3 167170544 167170667 -50866491 - MIR SINE MIR -132 130 3 456 286 38 32 chr3 167171365 167171550 -50865608 - MIR3 SINE MIR -2 206 21 2298 91 10 16 chr3 167172176 167172484 -50864674 - AluSx SINE Alu -6 306 1 1966 82 12 0 chr3 167173515 167173770 -50863388 - AluY SINE Alu -53 258 1 1947 137 4 0 chr3 167174831 167175108 -50862050 + AluSx SINE Alu 23 300 -12 303 205 33 119 chr3 167175303 167175454 -50861704 - MIR SINE MIR 0 262 125 334 297 117 0 chr3 167175476 167175604 -50861554 - L1MC/D LINE L1 -2210 5598 5456 237 299 58 0 chr3 167175717 167175804 -50861354 - L1MC/D LINE L1 -1332 4814 4723 324 147 0 0 chr3 167176581 167176649 -50860509 - L1MB7 LINE L1 -5 6179 6112 2239 116 0 7 chr3 167176649 167176952 -50860206 + AluSx SINE Alu 1 301 -11 769 118 8 16 chr3 167177619 167177746 -50859412 + AluSg/x SINE Alu 187 312 0 463 289 57 10 chr3 167178516 167178710 -50858448 - MIR3 SINE MIR -1 207 5 1636 150 22 29 chr3 167179125 167179398 -50857760 + AluJo SINE Alu 1 271 -41 1554 197 3 10 chr3 167180056 167180355 -50856803 - AluJo SINE Alu -5 307 11 276 198 9 60 chr3 167180543 167180659 -50856499 - L1MC5 LINE L1 -45 7916 7807 706 135 71 16 chr3 167181114 167181240 -50855918 + FLAM_C SINE Alu 1 133 0 348 370 56 0 chr3 167182204 167182366 -50854792 - L2 LINE L2 0 3272 3102 203 143 0 82 chr3 167183148 167183197 -50853961 - MIR3 SINE MIR -2 206 162 4063 146 59 6 chr3 167184159 167184842 -50852316 + Tigger1 DNA MER2_type 2 720 -1698 617 189 65 71 chr3 167185154 167185323 -50851835 - MER82 DNA MER2_type -485 168 1 3134 198 90 13 chr3 167185327 167186117 -50851041 + L1ME1 LINE L1 5244 6091 -75 468 188 149 0 chr3 167188110 167188264 -50848894 - L1MB2 LINE L1 0 6171 5995 1722 146 93 0 chr3 167188282 167188562 -50848596 - AluSx SINE Alu -6 306 1 1273 133 8 39 chr3 167188562 167188796 -50848362 - L1MB2 LINE L1 -260 5908 5682 1163 105 12 0 chr3 167188919 167189081 -50848077 - AluSg SINE Alu -146 164 1 1863 145 11 7 chr3 167189699 167190012 -50847146 + AluSx SINE Alu 1 314 0 255 95 0 48 chr3 167190017 167190059 -50847099 + Alu SINE Alu 1 40 -261 456 301 6 60 chr3 167292268 167292434 -50744724 + L2 LINE L2 3116 3272 0 197 234 21 0 chr3 167292698 167292745 -50744413 - MIR3 SINE MIR -11 197 150 344 291 132 45 chr3 167293108 167293373 -50743785 - L3 LINE CR1 -122 1455 1168 1663 183 55 6 chr3 167294624 167294952 -50742206 - MER2 DNA MER2_type 0 344 1 34 24 0 0 chr3 167295143 167295184 -50741974 + AT_rich Low_complexity Low_complexity 1 41 0 1845 145 0 24 chr3 167295186 167295482 -50741676 - AluJo SINE Alu -23 289 1 1038 134 41 0 chr3 167295493 167295665 -50741493 - L1MC1 LINE L1 0 6333 6155 2021 132 3 3 chr3 167296363 167296658 -50740500 - AluJo SINE Alu -9 303 9 366 291 117 39 chr3 167296666 167296845 -50740313 + MIR SINE MIR 51 243 -19 752 251 10 34 chr3 167296873 167297080 -50740078 + MIR SINE MIR 61 262 0 27 29 0 0 chr3 167297211 167297245 -50739913 + AT_rich Low_complexity Low_complexity 1 34 0 232 196 22 0 chr3 167297300 167297346 -50739812 + MIR SINE MIR 216 262 0 31 26 0 0 chr3 167297476 167297514 -50739644 + AT_rich Low_complexity Low_complexity 1 38 0 377 298 32 16 chr3 167297748 167297872 -50739286 + MIR SINE MIR 16 141 -67 725 315 50 4 chr3 167297968 167298206 -50738952 + MIR SINE MIR 14 262 0 24 32 0 0 chr3 167298655 167298686 -50738472 + AT_rich Low_complexity Low_complexity 1 31 0 341 22 22 0 chr3 167299935 167299981 -50737177 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 9395 135 12 2 chr3 167299981 167302363 -50734795 - L1PA11 LINE L1 -24 6150 3742 356 331 65 23 chr3 167302442 167302537 -50734621 - HAL1 LINE L1 -1464 1043 953 2118 161 30 57 chr3 167302537 167302997 -50734161 - L1MB1 LINE L1 0 6168 5721 356 331 65 23 chr3 167302997 167303161 -50733997 - HAL1 LINE L1 -1554 953 773 2140 129 0 0 chr3 167304090 167304400 -50732758 - AluSx SINE Alu -2 310 1 29 84 0 0 chr3 167305229 167305300 -50731858 + AT_rich Low_complexity Low_complexity 1 71 0 24 91 0 0 chr3 167305456 167305522 -50731636 + AT_rich Low_complexity Low_complexity 1 66 0 1141 123 38 142 chr3 167305758 167306075 -50731083 - L1MA9 LINE L1 0 6312 6029 1020 157 174 38 chr3 167307822 167308058 -50729100 - AluJb SINE Alu -1 311 44 1798 179 18 12 chr3 167308940 167309280 -50727878 - MER61A LTR ERV1 0 343 2 24 77 0 0 chr3 167309288 167309340 -50727818 + AT_rich Low_complexity Low_complexity 1 52 0 528 250 200 28 chr3 167309537 167309717 -50727441 + MIR SINE MIR 2 212 -50 210 330 161 9 chr3 167309790 167309902 -50727256 + L2 LINE L2 3184 3312 -1 26 30 0 0 chr3 167309992 167310025 -50727133 + AT_rich Low_complexity Low_complexity 1 33 0 2225 119 135 8 chr3 167311325 167311703 -50725455 + MSTA LTR MaLR 3 428 0 320 218 21 49 chr3 167311795 167311937 -50725221 + (TA)n Simple_repeat Simple_repeat 2 139 0 3683 191 68 44 chr3 167311938 167313092 -50724066 + L1MB7 LINE L1 5016 6183 -1 2344 186 13 2 chr3 167313140 167313596 -50723562 - MER65C LTR ERV1 0 461 1 1175 198 65 44 chr3 167313719 167313781 -50723377 - AluJo SINE Alu -13 299 240 3079 102 9 0 chr3 167313781 167314204 -50722954 - MSTA LTR MaLR 0 428 2 1175 198 65 44 chr3 167314204 167314434 -50722724 - AluJo SINE Alu -72 240 1 2001 102 0 4 chr3 167314456 167314730 -50722428 - AluSg SINE Alu -2 308 36 664 307 20 0 chr3 167314989 167315191 -50721967 + MIR SINE MIR 57 262 0 195 310 11 81 chr3 167316824 167316911 -50720247 - L2 LINE L2 -25 3288 3208 1597 134 32 139 chr3 167317112 167317388 -50719770 + MLT2D LTR ERVL 1 220 -194 914 137 0 0 chr3 167317388 167317519 -50719639 - FLAM_C SINE Alu -1 132 2 1597 134 32 139 chr3 167317519 167317652 -50719506 + MLT2D LTR ERVL 220 366 -48 208 77 51 0 chr3 167317653 167317692 -50719466 + CT-rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr3 167317768 167317789 -50719369 + AT_rich Low_complexity Low_complexity 1 21 0 403 228 35 18 chr3 167317801 167317915 -50719243 - L1ME LINE L1 -424 5697 5582 412 237 140 0 chr3 167318428 167318542 -50718616 - L2 LINE L2 -4 3309 3180 21 36 0 0 chr3 167318843 167318871 -50718287 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr3 167318957 167318993 -50718165 + AT_rich Low_complexity Low_complexity 1 36 0 365 22 0 0 chr3 167319638 167319683 -50717475 + AluSp/q SINE Alu 186 230 -73 560 263 93 64 chr3 167319693 167320070 -50717088 + L2 LINE L2 2925 3312 -1 23 54 0 0 chr3 167320413 167320450 -50716708 + AT_rich Low_complexity Low_complexity 1 37 0 333 343 24 24 chr3 167320996 167321206 -50715952 + MER102a DNA MER1_type 112 321 -9 405 0 0 0 chr3 167322721 167322766 -50714392 + (TA)n Simple_repeat Simple_repeat 2 46 0 477 346 91 8 chr3 167322856 167323110 -50714048 + L2 LINE L2 2039 2313 -1001 451 330 28 33 chr3 167323292 167323507 -50713651 + L2 LINE L2 2359 2572 -742 1858 167 54 51 chr3 167323544 167323933 -50713225 + MLT1B LTR MaLR 1 390 0 233 194 0 15 chr3 167323981 167324048 -50713110 + CT-rich Low_complexity Low_complexity 1 66 0 206 178 22 0 chr3 167324067 167324112 -50713046 + A-rich Low_complexity Low_complexity 6 51 0 183 80 0 0 chr3 167324753 167324778 -50712380 + (T)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr3 167325517 167325539 -50711619 + AT_rich Low_complexity Low_complexity 1 22 0 231 114 0 0 chr3 167326012 167326047 -50711111 + MER3 DNA MER1_type 15 49 -160 327 182 0 91 chr3 167326047 167326146 -50711012 + L1ME1 LINE L1 6058 6147 -19 200 296 84 0 chr3 167326541 167326612 -50710546 + MIR SINE MIR 122 198 -64 393 236 73 18 chr3 167326919 167327029 -50710129 + L2 LINE L2 3197 3312 -1 280 243 137 16 chr3 167327310 167327565 -50709593 - L1ME4a LINE L1 -65 6056 5771 663 270 62 40 chr3 167328015 167328241 -50708917 - MIR SINE MIR 0 262 32 8630 104 38 6 chr3 167328246 167329493 -50707665 + HSMAR1 DNA Mariner 1 1287 0 627 391 75 18 chr3 167329607 167330389 -50706769 + L2 LINE L2 1715 2541 -773 231 330 78 9 chr3 167331494 167331609 -50705549 + L2 LINE L2 3173 3295 -18 1151 196 50 9 chr3 167332070 167332290 -50704868 + AluJb SINE Alu 1 229 -83 890 370 93 11 chr3 167332598 167333234 -50703924 + L2 LINE L2 2256 2943 -371 198 0 0 0 chr3 167333411 167333433 -50703725 + (TG)n Simple_repeat Simple_repeat 2 23 0 224 305 34 0 chr3 167333475 167333534 -50703624 + MIR SINE MIR 2 62 -200 4734 231 75 62 chr3 167333693 167335417 -50701741 - MER52A LTR ERV1 0 1755 10 456 238 56 35 chr3 167335426 167335569 -50701589 + MIR SINE MIR 61 206 -56 570 354 58 26 chr3 167335604 167336207 -50700951 - ERVL LTR ERVL -3559 2205 1552 22 0 0 0 chr3 167336738 167336760 -50700398 + AT_rich Low_complexity Low_complexity 1 22 0 2272 113 0 3 chr3 167337398 167337709 -50699449 - AluSg SINE Alu 0 310 1 448 314 63 42 chr3 167337739 167337978 -50699180 - MIR SINE MIR 0 262 19 1777 140 61 0 chr3 167338490 167338783 -50698375 + AluJo SINE Alu 1 311 -1 283 143 20 0 chr3 167339123 167339172 -50697986 + LTR16A LTR ERVL 1 50 -400 23 0 0 0 chr3 167339859 167339882 -50697276 + AT_rich Low_complexity Low_complexity 1 23 0 546 285 116 8 chr3 167341156 167341460 -50695698 + LTR16A LTR ERVL 1 374 -76 21 71 0 0 chr3 167343051 167343093 -50694065 + AT_rich Low_complexity Low_complexity 1 42 0 253 208 94 0 chr3 167343435 167343488 -50693670 + L2 LINE L2 3254 3311 -2 1526 203 10 10 chr3 167343572 167343872 -50693286 + AluJo SINE Alu 1 300 -12 21 57 0 0 chr3 167344590 167344625 -50692533 + AT_rich Low_complexity Low_complexity 1 35 0 572 38 0 12 chr3 167344677 167344757 -50692401 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 397 145 16 0 chr3 167345278 167345340 -50691818 - MLT1B LTR MaLR -298 92 30 1953 157 43 0 chr3 167345365 167345710 -50691448 + MLT1B LTR MaLR 30 389 -1 2709 216 68 35 chr3 167346921 167348095 -50689063 + L1ME LINE L1 4357 5566 -600 435 178 0 0 chr3 167348168 167348269 -50688889 + (TA)n Simple_repeat Simple_repeat 1 101 0 219 36 0 0 chr3 167348269 167348297 -50688861 + (GA)n Simple_repeat Simple_repeat 2 29 0 3879 177 20 3 chr3 167348319 167348979 -50688179 - MER44D DNA MER2_type 0 705 35 1589 262 111 72 chr3 167350077 167350931 -50686227 + MER45C DNA AcHobo 1 951 -2 25 51 0 0 chr3 167351975 167352014 -50685144 + AT_rich Low_complexity Low_complexity 1 39 0 465 221 31 133 chr3 167352286 167352481 -50684677 + MIR SINE MIR 78 252 -10 261 83 0 0 chr3 167352804 167352840 -50684318 + (CA)n Simple_repeat Simple_repeat 2 37 0 755 268 45 22 chr3 167354376 167354432 -50682726 + LTR37A LTR ERV1 81 134 -292 2141 123 0 7 chr3 167354432 167354732 -50682426 + AluSx SINE Alu 1 298 -14 755 268 45 22 chr3 167354732 167354989 -50682169 + LTR37A LTR ERV1 134 401 -25 395 336 47 0 chr3 167355519 167355668 -50681490 - MIR SINE MIR -55 207 52 276 304 73 59 chr3 167355841 167356114 -50681044 - L2 LINE L2 -1235 2079 1803 822 170 0 0 chr3 167356530 167356665 -50680493 + AluJo SINE Alu 1 135 -177 309 319 52 68 chr3 167357801 167358052 -50679106 - L1 LINE L1 -1823 4323 4077 1844 188 67 39 chr3 167358186 167358237 -50678921 + Tigger1 DNA MER2_type 1 49 -2369 432 0 0 0 chr3 167358237 167358285 -50678873 + (TA)n Simple_repeat Simple_repeat 2 49 0 189 0 0 0 chr3 167358297 167358318 -50678840 + (CA)n Simple_repeat Simple_repeat 2 22 0 2066 125 0 0 chr3 167358318 167358591 -50678567 - AluSx SINE Alu -33 279 4 1844 188 67 39 chr3 167358591 167358948 -50678210 + Tigger1 DNA MER2_type 53 428 -1990 1080 169 15 0 chr3 167358951 167359146 -50678012 + L1PB1 LINE L1 3 200 -6663 14578 186 25 13 chr3 167359148 167364818 -50672340 + L1PB1 LINE L1 636 6517 -350 439 87 25 124 chr3 167364830 167365647 -50671511 + (TA)n Simple_repeat Simple_repeat 1 735 0 303 112 45 92 chr3 167365661 167366016 -50671142 + (TA)n Simple_repeat Simple_repeat 1 338 0 227 95 0 0 chr3 167366031 167366073 -50671085 - LTR66 LTR ERVL -164 446 405 2572 91 19 3 chr3 167366079 167366441 -50670717 + L1PB1 LINE L1 6498 6865 -2 3316 126 9 15 chr3 167366470 167367001 -50670157 + Tigger1 DNA MER2_type 413 940 -1478 473 272 131 5 chr3 167367714 167367905 -50669253 + MARNA DNA Mariner 302 516 -70 1144 285 33 71 chr3 167367908 167368389 -50668769 + MLT1J LTR MaLR 3 465 -46 379 266 32 83 chr3 167368764 167369016 -50668142 - L2 LINE L2 0 3313 3075 495 297 40 43 chr3 167369319 167369595 -50667563 - L2 LINE L2 0 3313 3039 3348 71 14 2 chr3 167369737 167370176 -50666982 + MLT2A1 LTR ERVL 1 444 0 6365 123 40 1 chr3 167370499 167371474 -50665684 - Tigger1 DNA MER2_type 0 2418 1406 2561 105 6 0 chr3 167371474 167371827 -50665331 - THE1A LTR MaLR 0 355 1 11459 89 13 1 chr3 167371832 167373393 -50663765 - THE1A-int LTR MaLR 0 1580 1 2638 88 6 0 chr3 167373393 167373746 -50663412 - THE1A LTR MaLR 0 355 1 8674 136 16 23 chr3 167373746 167375165 -50661993 - Tigger1 DNA MER2_type -1008 1410 1 449 295 50 86 chr3 167375852 167375957 -50661201 + L1ME LINE L1 5379 5486 -635 2012 151 0 0 chr3 167375957 167376249 -50660909 + AluSx SINE Alu 1 292 -20 449 295 50 86 chr3 167376249 167376560 -50660598 + L1ME LINE L1 5486 5780 -341 2769 195 18 10 chr3 167377166 167377679 -50659479 - MER74A LTR ERVL -16 542 26 1190 206 20 71 chr3 167378364 167378758 -50658400 + MLT1A2 LTR MaLR 1 374 0 317 336 46 15 chr3 167379751 167379882 -50657276 + L1MCa LINE L1 1420 1554 -4872 * 353 283 101 35 chr3 167379849 167380047 -50657111 + HAL1 LINE L1 1840 2050 -737 2233 79 0 67 chr3 167380216 167380544 -50656614 - AluSq SINE Alu -7 306 1 530 140 40 30 chr3 167381437 167381537 -50655621 + MER53 DNA DNA 1 101 -88 447 294 80 33 chr3 167381540 167381755 -50655403 + MIR SINE MIR 40 262 0 4329 175 57 33 chr3 167382121 167383054 -50654104 + L1MC3 LINE L1 6701 7655 -130 543 268 12 42 chr3 167383051 167383219 -50653939 - L1ME1 LINE L1 -62 6104 5942 * 558 191 19 0 chr3 167383271 167383376 -50653782 + L1MC3 LINE L1 7658 7764 -21 1776 187 52 56 chr3 167383382 167383918 -50653240 + L1ME1 LINE L1 4700 5233 -913 1659 192 71 117 chr3 167383943 167384506 -50652652 + L1ME1 LINE L1 5317 5847 -317 1969 115 0 11 chr3 167384506 167384793 -50652365 + AluSg SINE Alu 2 285 -25 1659 192 71 117 chr3 167384793 167384875 -50652283 + L1ME1 LINE L1 5847 5931 -233 1568 99 31 5 chr3 167384879 167385102 -50652056 + AluSq SINE Alu 1 229 -84 1980 184 76 26 chr3 167385104 167385565 -50651593 - LTR2B LTR ERV1 0 490 7 395 152 0 0 chr3 167385564 167385630 -50651528 + AluSq SINE Alu 226 291 -12 * 607 235 49 59 chr3 167385653 167385857 -50651301 + L1ME1 LINE L1 5976 6178 0 831 226 46 26 chr3 167385895 167386090 -50651068 + MIR SINE MIR 49 247 -15 499 307 191 27 chr3 167386106 167386618 -50650540 + L2 LINE L2 2458 3058 -255 2307 220 62 9 chr3 167386744 167387796 -50649362 - L1MC4 LINE L1 -150 7892 6647 477 271 130 16 chr3 167387844 167388036 -50649122 - L1MC4 LINE L1 -1371 6671 6458 944 114 29 6 chr3 167388273 167388448 -50648710 + CT-rich Low_complexity Low_complexity 2 180 0 195 301 223 10 chr3 167388449 167388552 -50648606 + L2 LINE L2 3136 3260 -12 453 342 55 0 chr3 167390130 167390329 -50646829 + MIR SINE MIR 32 241 -21 303 308 0 48 chr3 167391906 167392010 -50645148 + L2 LINE L2 3174 3272 0 3931 128 18 16 chr3 167392439 167393049 -50644109 - LTR36 LTR ERV1 0 611 1 1815 205 57 30 chr3 167393540 167393999 -50643159 + MLT1D LTR MaLR 35 505 0 1772 168 0 10 chr3 167394557 167394849 -50642309 - AluJb SINE Alu -22 290 2 1772 154 33 39 chr3 167395013 167395376 -50641782 - MER46B DNA MER2_type 0 236 1 235 294 65 33 chr3 167396409 167396501 -50640657 + MIR SINE MIR 157 251 -11 1137 330 49 12 chr3 167397738 167398244 -50638914 + L2 LINE L2 2449 2973 -341 1797 175 13 58 chr3 167398371 167398684 -50638474 - MLT1A1 LTR MaLR 0 365 70 2180 157 60 8 chr3 167398684 167399085 -50638073 - MSTB LTR MaLR 0 426 5 1797 175 13 58 chr3 167399085 167399153 -50638005 - MLT1A1 LTR MaLR -295 70 1 616 95 0 11 chr3 167399827 167399922 -50637236 + (GA)n Simple_repeat Simple_repeat 1 94 0 546 91 0 0 chr3 167401106 167401183 -50635975 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 1719 184 6 19 chr3 167401194 167401509 -50635649 - AluJb SINE Alu -1 311 1 23 0 0 0 chr3 167401636 167401659 -50635499 + AT_rich Low_complexity Low_complexity 1 23 0 2151 115 3 0 chr3 167402724 167403019 -50634139 + AluSx SINE Alu 3 298 -14 22 0 0 0 chr3 167403154 167403176 -50633982 + AT_rich Low_complexity Low_complexity 1 22 0 311 337 37 46 chr3 167403219 167403655 -50633503 + L1ME4a LINE L1 5494 5925 -196 228 191 0 21 chr3 167405455 167405502 -50631656 - L2 LINE L2 0 3313 3268 3798 186 15 8 chr3 167405574 167406304 -50630854 - L1MB7 LINE L1 -37 6147 5413 568 217 26 0 chr3 167406320 167406435 -50630723 - FLAM_C SINE Alu -23 120 3 588 269 6 6 chr3 167406437 167406608 -50630550 - L1MB7 LINE L1 -1443 4703 4533 2331 216 39 10 chr3 167406699 167407291 -50629867 - L1MB7 LINE L1 -1605 4541 3933 589 294 138 9 chr3 167407528 167407746 -50629412 + MIR SINE MIR 1 246 -16 359 271 62 0 chr3 167407756 167407852 -50629306 - LTR33 LTR ERVL -304 217 116 263 132 0 0 chr3 167407854 167407892 -50629266 - MLT1E3 LTR MaLR -584 40 3 662 277 67 25 chr3 167409166 167409448 -50627710 - LTR16A1 LTR ERVL -5 452 159 1818 188 82 3 chr3 167411994 167412361 -50624797 + MSTD LTR MaLR 1 396 0 22 0 0 0 chr3 167412571 167412593 -50624565 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr3 167413299 167413328 -50623830 + AT_rich Low_complexity Low_complexity 1 29 0 233 102 34 51 chr3 167414357 167414416 -50622742 + A-rich Low_complexity Low_complexity 2 59 0 877 298 104 51 chr3 167415014 167415085 -50622073 + L2 LINE L2 2458 2524 -789 1890 176 19 21 chr3 167415085 167415461 -50621697 - THE1C LTR MaLR 0 375 1 877 298 104 51 chr3 167415461 167416209 -50620949 + L2 LINE L2 2524 3313 0 2052 91 35 7 chr3 167416771 167417058 -50620100 + AluY SINE Alu 1 295 -16 1101 135 6 0 chr3 167417061 167417217 -50619941 + AluSg/x SINE Alu 137 293 -19 243 0 0 0 chr3 167417772 167417799 -50619359 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 254 49 0 49 chr3 167418178 167418219 -50618939 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 634 256 126 11 chr3 167418901 167419163 -50617995 - L1MEc LINE L1 -5501 895 604 574 183 100 0 chr3 167419163 167419283 -50617875 - FRAM SINE Alu -19 157 26 994 262 144 42 chr3 167419288 167419719 -50617439 - L1MEc LINE L1 -5811 585 111 9861 196 21 28 chr3 167419727 167422093 -50615065 + L1M1 LINE L1 3470 5817 -1748 6979 151 23 30 chr3 167422130 167424259 -50612899 + L1MA8 LINE L1 4075 6182 -109 459 104 0 0 chr3 167424263 167424330 -50612828 + MER41A LTR ERV1 400 466 -88 548 191 0 0 chr3 167424338 167424453 -50612705 + L1MA8 LINE L1 6175 6289 -2 21 0 0 0 chr3 167424453 167424474 -50612684 + AT_rich Low_complexity Low_complexity 1 21 0 653 295 80 31 chr3 167425014 167425339 -50611819 - HAL1 LINE L1 -626 1881 1541 318 288 64 40 chr3 167425413 167425663 -50611495 - HAL1 LINE L1 -1085 1422 1167 390 290 140 85 chr3 167425922 167426287 -50610871 - HAL1 LINE L1 -1696 811 427 266 304 62 79 chr3 167426301 167426669 -50610489 - HAL1 LINE L1 -2145 362 1 360 219 38 109 chr3 167428018 167428201 -50608957 + MLT1L LTR MaLR 236 405 -210 241 364 31 31 chr3 167428804 167428933 -50608225 + L2 LINE L2 3143 3271 -1 490 28 42 0 chr3 167430451 167430522 -50606636 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 769 235 115 0 chr3 167432606 167432806 -50604352 + MER58A DNA MER1_type 1 223 -1 1337 186 58 0 chr3 167433312 167433586 -50603572 + AluJo SINE Alu 2 291 -21 429 246 92 21 chr3 167433776 167433918 -50603240 + MER103 DNA DNA 9 160 -6 214 260 0 0 chr3 167433921 167433971 -50603187 - L2 LINE L2 -9 3263 3214 1036 279 205 19 chr3 167434783 167435524 -50601634 + L2 LINE L2 2270 3213 -100 295 241 13 51 chr3 167435552 167435631 -50601527 + MIR SINE MIR 152 227 -35 283 192 71 81 chr3 167435762 167435861 -50601297 + L2 LINE L2 3216 3313 0 267 264 176 0 chr3 167436199 167436290 -50600868 - MIR SINE MIR -110 152 46 20189 118 7 8 chr3 167436296 167436692 -50600466 + L1PA8 LINE L1 2153 2548 -3624 2192 113 0 0 chr3 167436692 167436983 -50600175 + AluSg SINE Alu 1 291 -19 20189 118 7 8 chr3 167436983 167440607 -50596551 + L1PA8 LINE L1 2548 6168 -4 289 295 54 47 chr3 167440668 167440791 -50596367 - MIR SINE MIR 0 262 139 526 216 95 0 chr3 167440791 167440907 -50596251 + MIR SINE MIR 4 130 -132 23 33 0 0 chr3 167441456 167441486 -50595672 + AT_rich Low_complexity Low_complexity 1 30 0 1525 248 83 28 chr3 167441492 167442061 -50595097 + Charlie7 DNA MER1_type 137 736 -1876 427 195 124 43 chr3 167442093 167442303 -50594855 + Charlie7 DNA MER1_type 2384 2610 -2 180 0 0 0 chr3 167443100 167443120 -50594038 + (TG)n Simple_repeat Simple_repeat 1 20 0 339 296 0 0 chr3 167443120 167443208 -50593950 + L1MC4 LINE L1 6615 6702 -1340 407 301 15 22 chr3 167443253 167443389 -50593769 + MIR SINE MIR 72 206 -56 1744 63 0 14 chr3 167443967 167444189 -50592969 + AluY SINE Alu 82 300 -11 269 26 26 0 chr3 167444445 167444483 -50592675 + (TG)n Simple_repeat Simple_repeat 2 40 0 1843 141 53 10 chr3 167445425 167445724 -50591434 - AluSx SINE Alu 0 312 1 2033 122 74 14 chr3 167446401 167446753 -50590405 - THE1C LTR MaLR 0 375 3 23 54 0 0 chr3 167448010 167448047 -50589111 + AT_rich Low_complexity Low_complexity 1 37 0 384 279 44 57 chr3 167448391 167448549 -50588609 + MER5A DNA MER1_type 34 189 0 22 35 0 0 chr3 167448713 167448742 -50588416 + AT_rich Low_complexity Low_complexity 1 29 0 2343 58 0 46 chr3 167448760 167448884 -50588274 - AluY SINE Alu 0 311 183 2798 19 0 0 chr3 167448884 167449198 -50587960 - AluYb8 SINE Alu -4 314 1 2343 58 0 46 chr3 167449198 167449399 -50587759 - AluY SINE Alu -128 183 1 28 29 0 0 chr3 167451261 167451296 -50585862 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr3 167451351 167451382 -50585776 + AT_rich Low_complexity Low_complexity 1 31 0 479 355 30 10 chr3 167452065 167452265 -50584893 + MIR3 SINE MIR 3 206 -2 23 33 0 0 chr3 167452737 167452767 -50584391 + AT_rich Low_complexity Low_complexity 1 30 0 281 303 74 51 chr3 167453462 167453637 -50583521 + MIR SINE MIR 70 248 -14 373 347 54 0 chr3 167453689 167453836 -50583322 + MIR SINE MIR 57 211 -51 22 0 0 0 chr3 167453916 167453938 -50583220 + AT_rich Low_complexity Low_complexity 1 22 0 2165 116 148 8 chr3 167455258 167455630 -50581528 - MSTA LTR MaLR 0 428 5 22 35 0 0 chr3 167455844 167455873 -50581285 + AT_rich Low_complexity Low_complexity 1 29 0 256 244 70 43 chr3 167456511 167456626 -50580532 + LTR35 LTR ERV1 1 118 -500 729 229 63 33 chr3 167456898 167457230 -50579928 + LTR35 LTR ERV1 348 618 0 566 301 51 9 chr3 167457249 167457465 -50579693 + LTR49-int LTR ERV1 414 638 -5308 313 211 0 0 chr3 167458218 167458270 -50578888 + LTR49-int LTR ERV1 2678 2729 -3217 2605 194 46 50 chr3 167458344 167459357 -50577801 + LTR49-int LTR ERV1 1383 3149 -1731 * 3932 132 47 75 chr3 167459348 167459785 -50577373 + LTR49-int LTR ERV1 4912 5318 -1013 1941 121 33 0 chr3 167459785 167460094 -50577064 + AluSx SINE Alu 1 318 0 3932 132 47 75 chr3 167460094 167460487 -50576671 + LTR49-int LTR ERV1 5318 5720 -611 291 315 20 20 chr3 167461106 167461252 -50575906 + MER70-int LTR ERVL 4520 4665 -358 * 327 357 5 11 chr3 167461128 167461313 -50575845 + LTR35-int LTR ERV1 6077 6260 -416 28 0 0 0 chr3 167461460 167461488 -50575670 + AT_rich Low_complexity Low_complexity 1 28 0 326 197 117 58 chr3 167461607 167461744 -50575414 + LTR35-int LTR ERV1 6526 6670 -6 307 278 69 56 chr3 167461774 167461918 -50575240 + LTR35 LTR ERV1 1 146 -472 683 101 10 0 chr3 167462025 167462124 -50575034 - LTR12 LTR ERV1 0 714 615 296 253 10 0 chr3 167462126 167462225 -50574933 - LTR30 LTR ERV1 -79 643 544 2318 62 0 3 chr3 167462239 167462543 -50574615 - L1PA6 LINE L1 -1 6153 5851 1437 119 67 67 chr3 167462546 167462815 -50574343 - LTR12 LTR ERV1 -440 274 6 606 239 67 31 chr3 167462815 167463131 -50574027 + LTR35 LTR ERV1 349 618 0 239 277 21 32 chr3 167463259 167463353 -50573805 + MER34 LTR ERV1 41 133 -409 387 230 73 73 chr3 167463510 167463701 -50573457 + LTR48 LTR ERV1 588 778 -9 1895 173 0 6 chr3 167463866 167464179 -50572979 + AluJb SINE Alu 1 311 -1 26 0 0 0 chr3 167465220 167465246 -50571912 + AT_rich Low_complexity Low_complexity 1 26 0 296 220 53 106 chr3 167465378 167465510 -50571648 + Charlie8 DNA MER1_type 33 157 -2260 198 132 79 0 chr3 167465572 167465648 -50571510 + (TA)n Simple_repeat Simple_repeat 2 83 0 310 276 61 0 chr3 167465688 167465786 -50571372 + Charlie8 DNA MER1_type 176 279 -2138 206 196 22 22 chr3 167466033 167466079 -50571079 - MER5A DNA MER1_type -143 46 1 582 198 0 0 chr3 167466725 167466826 -50570332 - AluJ/FLAM SINE Alu -211 101 1 3473 135 39 59 chr3 167468507 167468661 -50568497 - MER39B LTR ERV1 0 653 498 4102 147 41 4 chr3 167468661 167469376 -50567782 - L1PA16 LINE L1 -5 6161 5421 3473 135 39 59 chr3 167469376 167469444 -50567714 - MER39B LTR ERV1 -155 498 430 2666 29 0 13 chr3 167469444 167469759 -50567399 + AluYa5 SINE Alu 1 311 0 3473 135 39 59 chr3 167469759 167470201 -50566957 - MER39B LTR ERV1 -223 430 1 319 301 32 16 chr3 167470792 167470915 -50566243 - L2 LINE L2 -1 3312 3188 1595 164 3 44 chr3 167470920 167471242 -50565916 - AluJb SINE Alu 0 315 6 301 330 48 0 chr3 167471548 167471651 -50565507 + MER91C DNA MER1_type 33 140 0 1057 203 92 43 chr3 167471708 167472034 -50565124 + MER2 DNA MER2_type 3 344 0 194 361 58 26 chr3 167472039 167472194 -50564964 - L2 LINE L2 -255 3017 2858 319 325 41 61 chr3 167472247 167472493 -50564665 - L2 LINE L2 -897 2417 2177 523 264 118 45 chr3 167473132 167473411 -50563747 - L1ME3 LINE L1 -232 5946 5689 1759 172 15 26 chr3 167473411 167473754 -50563404 - MER44D DNA MER2_type 0 609 1 523 264 118 45 chr3 167473754 167474289 -50562869 - L1ME3 LINE L1 -489 5689 5039 1906 162 3 0 chr3 167474298 167474594 -50562564 - AluSx SINE Alu -15 297 1 331 310 18 18 chr3 167474774 167474945 -50562213 - L1ME3 LINE L1 -1323 4823 4653 23 0 0 0 chr3 167475029 167475052 -50562106 + AT_rich Low_complexity Low_complexity 1 23 0 1057 308 89 13 chr3 167475461 167475977 -50561181 - L2 LINE L2 -1 3312 2762 1973 214 116 53 chr3 167476077 167476975 -50560183 - Charlie2 DNA MER1_type -18 2844 1891 3515 53 32 105 chr3 167476980 167477544 -50559614 - L1PA7 LINE L1 -3 6151 5629 852 278 21 45 chr3 167477592 167477926 -50559232 - Charlie2 DNA MER1_type -2456 326 1 1766 148 0 4 chr3 167479029 167479306 -50557852 + AluSg SINE Alu 35 310 0 417 336 116 39 chr3 167479755 167480237 -50556921 + L2 LINE L2 2772 3280 -33 30 69 0 0 chr3 167482104 167482162 -50554996 + AT_rich Low_complexity Low_complexity 1 58 0 450 264 52 66 chr3 167482385 167482597 -50554561 - MIR SINE MIR -33 229 21 1912 221 54 8 chr3 167483406 167483889 -50553269 + MLT1D LTR MaLR 1 505 0 1087 136 6 11 chr3 167483920 167484129 -50553029 - AluSg/x SINE Alu 0 312 137 282 239 92 39 chr3 167484451 167484581 -50552577 + MLT1K LTR MaLR 438 574 -14 21 0 0 0 chr3 167484610 167484631 -50552527 + AT_rich Low_complexity Low_complexity 1 21 0 2069 127 7 0 chr3 167486365 167486665 -50550493 + AluSx SINE Alu 1 302 -10 945 230 88 31 chr3 167486778 167487096 -50550062 + MER2 DNA MER2_type 10 345 0 1266 253 123 96 chr3 167487561 167488440 -50548718 - HAL1 LINE L1 -5 2502 1649 207 0 0 0 chr3 167488440 167488463 -50548695 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2102 132 0 0 chr3 167488465 167488753 -50548405 - AluSq SINE Alu -25 288 1 1266 253 123 96 chr3 167488753 167489514 -50547644 - HAL1 LINE L1 -858 1649 814 5989 180 12 2 chr3 167490261 167491451 -50545707 - L1MC1 LINE L1 0 6333 5130 223 191 0 21 chr3 167491954 167492001 -50545157 - L2 LINE L2 0 3313 3268 2462 206 19 18 chr3 167492073 167492636 -50544522 - L1MB7 LINE L1 -37 6147 5584 1399 268 34 22 chr3 167492747 167493280 -50543878 - L1MB7 LINE L1 -785 5361 4823 1298 223 14 22 chr3 167493280 167493558 -50543600 - AluJb SINE Alu -36 276 1 4131 219 42 51 chr3 167493558 167494694 -50542464 - L1MB7 LINE L1 -1321 4825 3700 2232 114 0 0 chr3 167494694 167494991 -50542167 - AluSx SINE Alu -15 297 1 4131 219 42 51 chr3 167494991 167495129 -50542029 - L1MB7 LINE L1 -2446 3700 3562 270 0 0 0 chr3 167495202 167495232 -50541926 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 306 0 0 0 chr3 167495554 167495588 -50541570 + (CA)n Simple_repeat Simple_repeat 2 35 0 224 271 132 54 chr3 167496201 167496330 -50540828 - MIR SINE MIR -77 185 47 2207 57 0 66 chr3 167496341 167496659 -50540499 - AluY SINE Alu -14 297 1 276 190 114 13 chr3 167498149 167498228 -50538930 + MIR SINE MIR 176 262 0 219 238 0 0 chr3 167499174 167499216 -50537942 + (TG)n Simple_repeat Simple_repeat 1 42 0 183 80 0 0 chr3 167499656 167499681 -50537477 + (CA)n Simple_repeat Simple_repeat 1 25 0 186 43 0 0 chr3 167501589 167501612 -50535546 + (T)n Simple_repeat Simple_repeat 1 23 0 256 301 12 0 chr3 167501816 167501899 -50535259 + GA-rich Low_complexity Low_complexity 5 88 0 523 294 106 13 chr3 167502131 167502366 -50534792 - MIR SINE MIR 0 262 6 226 204 0 0 chr3 167502364 167502408 -50534750 + MIR SINE MIR 188 231 -31 * 324 294 243 7 chr3 167502529 167502665 -50534493 + MER5A DNA MER1_type 9 176 -13 315 0 0 0 chr3 167504313 167504388 -50532770 + (TTA)n Simple_repeat Simple_repeat 1 110 0 315 0 0 0 chr3 167504388 167504423 -50532735 + (TTA)n Simple_repeat Simple_repeat 2 36 0 571 287 72 11 chr3 167505511 167505692 -50531466 + MIR SINE MIR 6 197 -65 1932 58 42 74 chr3 167505911 167506221 -50530937 + AluY SINE Alu 1 300 -11 2328 67 0 0 chr3 167506488 167506805 -50530353 - AluY SINE Alu 0 317 1 324 64 0 0 chr3 167514980 167515027 -50522131 + (TG)n Simple_repeat Simple_repeat 2 48 0 189 107 0 0 chr3 167515864 167515892 -50521266 + (TATG)n Simple_repeat Simple_repeat 4 31 0 253 296 125 0 chr3 167516698 167516786 -50520372 - MER112 DNA MER1_type -13 247 149 427 319 36 12 chr3 167517254 167517420 -50519738 + MIR SINE MIR 15 184 -78 300 373 33 8 chr3 167518245 167518489 -50518669 - L2 LINE L2 -917 2397 2148 3648 123 14 18 chr3 167519258 167519429 -50517729 - L1PA16 LINE L1 -9 6157 5987 2080 132 73 12 chr3 167519429 167519770 -50517388 + THE1B LTR MaLR 1 362 -2 12022 87 1 4 chr3 167519772 167521358 -50515800 + THE1B-int LTR MaLR 1 1580 0 2181 105 54 23 chr3 167521358 167521711 -50515447 + THE1B LTR MaLR 1 364 0 3648 123 14 18 chr3 167521711 167522106 -50515052 - L1PA16 LINE L1 -178 5988 5589 1026 229 61 50 chr3 167522497 167522777 -50514381 + MLT1G LTR MaLR 3 285 -305 228 135 0 0 chr3 167522807 167522844 -50514314 + (TG)n Simple_repeat Simple_repeat 1 37 0 6886 214 107 23 chr3 167524218 167525442 -50511716 + L1MD1 LINE L1 17 1430 -5110 2170 120 7 0 chr3 167525442 167525733 -50511425 + AluSc SINE Alu 1 293 -16 6886 214 107 23 chr3 167525733 167526244 -50510914 + L1MD1 LINE L1 1430 1897 -4643 6065 231 60 25 chr3 167526256 167528191 -50508967 + L1MD1 LINE L1 3374 5419 -1334 189 0 0 0 chr3 167528191 167528212 -50508946 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 6065 231 60 25 chr3 167528212 167529049 -50508109 + L1MD1 LINE L1 5419 6225 -528 21 36 0 0 chr3 167529053 167529081 -50508077 + AT_rich Low_complexity Low_complexity 1 28 0 665 184 8 24 chr3 167529081 167529206 -50507952 - FLAM_C SINE Alu -9 134 12 1842 167 41 29 chr3 167529213 167529313 -50507845 + L1MD1 LINE L1 6209 6306 -330 1092 206 13 4 chr3 167529313 167529546 -50507612 - MER46A DNA MER2_type 0 236 2 1842 167 41 29 chr3 167529546 167529858 -50507300 + L1MD1 LINE L1 6306 6626 -10 1336 202 52 62 chr3 167529898 167530363 -50506795 + L1ME2 LINE L1 5714 6334 0 632 239 78 62 chr3 167531518 167531761 -50505397 + MIR SINE MIR 11 257 -5 24 32 0 0 chr3 167532726 167532757 -50504401 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr3 167533135 167533156 -50504002 + AT_rich Low_complexity Low_complexity 1 21 0 203 289 101 81 chr3 167533533 167533682 -50503476 - L2 LINE L2 -776 2538 2387 672 324 48 39 chr3 167533937 167534292 -50502866 - L2 LINE L2 -1 3312 2955 452 317 28 6 chr3 167534494 167534674 -50502484 - L2 LINE L2 -348 2966 2783 255 140 0 0 chr3 167535542 167535592 -50501566 + (ATTG)n Simple_repeat Simple_repeat 2 51 0 216 274 16 16 chr3 167536424 167536486 -50500672 + CT-rich Low_complexity Low_complexity 5 66 0 2116 220 75 40 chr3 167536689 167537439 -50499719 + L1MC4 LINE L1 6971 7898 -144 23 0 0 0 chr3 167537481 167537504 -50499654 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr3 167537768 167537797 -50499361 + AT_rich Low_complexity Low_complexity 1 29 0 300 261 85 23 chr3 167538192 167538322 -50498836 - MIR SINE MIR -58 204 67 23 68 0 0 chr3 167538931 167538975 -50498183 + AT_rich Low_complexity Low_complexity 1 44 0 773 150 15 15 chr3 167539048 167539181 -50497977 + FLAM_C SINE Alu 1 133 0 699 239 131 14 chr3 167539785 167540007 -50497151 + MIR SINE MIR 1 248 -14 733 331 85 18 chr3 167540235 167540625 -50496533 + LTR33 LTR ERVL 4 419 -102 23 33 0 0 chr3 167540897 167540927 -50496231 + AT_rich Low_complexity Low_complexity 1 30 0 247 337 84 0 chr3 167542497 167542592 -50494566 + LTR16C LTR ERVL 375 477 -14 208 368 58 53 chr3 167543120 167543243 -50493915 - MIR3 SINE MIR -7 201 75 2502 164 28 5 chr3 167543243 167543677 -50493481 + MER65A LTR ERV1 2 445 0 208 368 58 53 chr3 167543677 167543724 -50493434 - MIR3 SINE MIR -133 75 30 1934 153 44 9 chr3 167544702 167545042 -50492116 + L1MC1 LINE L1 5973 6324 -9 200 229 0 21 chr3 167545179 167545227 -50491931 + A-rich Low_complexity Low_complexity 134 180 0 282 308 89 35 chr3 167545704 167545873 -50491285 - L2 LINE L2 -221 3051 2874 205 329 14 14 chr3 167545864 167545934 -50491224 - L2 LINE L2 -847 2467 2398 * 576 211 18 0 chr3 167545992 167546106 -50491052 - MER63A DNA MER1_type -37 173 58 398 365 35 0 chr3 167546477 167546674 -50490484 - MIR SINE MIR -11 251 48 2288 107 60 11 chr3 167546773 167547120 -50490038 - THE1B LTR MaLR 0 364 1 10248 112 40 10 chr3 167547120 167548654 -50488504 - THE1B-int LTR MaLR 0 1580 1 2411 115 16 19 chr3 167548654 167549019 -50488139 - THE1B LTR MaLR 0 364 1 630 249 153 5 chr3 167549635 167549844 -50487314 - MIR SINE MIR -11 251 12 1922 159 0 0 chr3 167550098 167550408 -50486750 + AluSx SINE Alu 1 310 0 29 47 0 0 chr3 167550413 167550456 -50486702 + AT_rich Low_complexity Low_complexity 1 43 0 2012 128 121 45 chr3 167552395 167552572 -50484586 + MSTA LTR MaLR 1 163 -265 2507 88 0 0 chr3 167552572 167552880 -50484278 + AluSc SINE Alu 1 308 -1 2012 128 121 45 chr3 167552880 167553100 -50484058 + MSTA LTR MaLR 163 428 0 190 348 18 9 chr3 167553232 167553344 -50483814 + L2 LINE L2 2331 2443 -871 764 221 60 15 chr3 167553789 167553988 -50483170 + MER3 DNA MER1_type 1 208 -1 365 263 128 45 chr3 167554174 167554330 -50482828 + MIR SINE MIR 46 214 -48 245 418 16 0 chr3 167554504 167554626 -50482532 + L2 LINE L2 3146 3269 -3 24 96 0 0 chr3 167555587 167555660 -50481498 + AT_rich Low_complexity Low_complexity 1 73 0 23 78 0 0 chr3 167555688 167555739 -50481419 + AT_rich Low_complexity Low_complexity 1 51 0 185 371 14 0 chr3 167556833 167556903 -50480255 - MIR3 SINE MIR -41 167 97 248 227 34 68 chr3 167557227 167557315 -50479843 - MLT1G1 LTR MaLR -34 561 477 238 240 146 10 chr3 167557448 167557544 -50479614 - MLT1I LTR MaLR -238 171 63 181 289 22 0 chr3 167557675 167557720 -50479438 - L2 LINE L2 -9 3304 3259 734 238 96 25 chr3 167558120 167558360 -50478798 + MIR SINE MIR 5 261 -1 990 171 0 140 chr3 167558487 167558751 -50478407 + AluJo SINE Alu 6 232 -80 270 345 11 0 chr3 167559057 167559144 -50478014 + L2 LINE L2 91 178 -3136 197 329 25 0 chr3 167559221 167559300 -50477858 + L2 LINE L2 3091 3171 -142 345 300 20 10 chr3 167559387 167559487 -50477671 + L2 LINE L2 2967 3067 -205 215 140 20 0 chr3 167559605 167559655 -50477503 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 258 105 0 0 chr3 167560094 167560132 -50477026 + (GAAA)n Simple_repeat Simple_repeat 3 40 0 540 298 55 36 chr3 167560644 167560957 -50476201 - LTR33 LTR ERVL -31 490 129 349 304 82 38 chr3 167560979 167561137 -50476021 - L1ME LINE L1 -369 5752 5588 583 307 64 34 chr3 167561250 167561608 -50475550 - HAL1b LINE L1 -619 729 361 24 32 0 0 chr3 167561634 167561665 -50475493 + AT_rich Low_complexity Low_complexity 1 31 0 2679 152 84 83 chr3 167562342 167562769 -50474389 - L1 LINE L1 -2243 3903 3473 1805 165 0 0 chr3 167562769 167563048 -50474110 - AluJb SINE Alu -33 279 1 2679 152 84 83 chr3 167563048 167563306 -50473852 - L1 LINE L1 -2673 3473 3217 28 79 0 0 chr3 167563723 167563786 -50473372 + AT_rich Low_complexity Low_complexity 1 63 0 382 268 54 88 chr3 167563886 167564091 -50473067 - L2 LINE L2 -9 3304 3107 2311 110 0 0 chr3 167564353 167564661 -50472497 + AluSg SINE Alu 1 308 -2 315 279 62 50 chr3 167564740 167564901 -50472257 - L2 LINE L2 -19 3294 3132 2318 153 68 8 chr3 167565062 167565462 -50471696 - MSTB LTR MaLR 0 426 3 9268 163 21 13 chr3 167565464 167567102 -50470056 - MSTB-int LTR MaLR 0 1651 1 813 90 0 0 chr3 167567142 167567242 -50469916 + AluY SINE Alu 1 100 -211 313 291 82 90 chr3 167567311 167567654 -50469504 - L2 LINE L2 -347 2967 2628 935 292 64 40 chr3 167567749 167568029 -50469129 + LTR16B LTR ERVL 2 299 -165 1674 163 62 39 chr3 167568029 167568386 -50468772 + MLT1A1 LTR MaLR 1 365 0 935 292 64 40 chr3 167568386 167568557 -50468601 + LTR16B LTR ERVL 299 464 0 459 330 131 45 chr3 167568599 167568914 -50468244 - L2 LINE L2 -833 2481 2194 2181 120 0 0 chr3 167568914 167569222 -50467936 + AluSx SINE Alu 5 312 0 459 330 131 45 chr3 167569222 167570005 -50467153 - L2 LINE L2 -1120 2194 1289 283 347 123 38 chr3 167570124 167570441 -50466717 - L2 LINE L2 -2619 695 352 184 188 104 0 chr3 167570455 167570503 -50466655 - MIR SINE MIR 0 262 210 1042 145 0 0 chr3 167570503 167570662 -50466496 - AluSg/x SINE Alu -8 302 144 195 339 24 32 chr3 167570744 167570868 -50466290 - L2 LINE L2 -2960 354 232 235 286 71 79 chr3 167571387 167571420 -50465738 + MER102b DNA MER1_type 193 225 -1203 563 222 0 26 chr3 167571420 167571537 -50465621 - MER81 DNA DNA 0 114 1 235 286 71 79 chr3 167571537 167571643 -50465515 + MER102b DNA MER1_type 225 331 -10 2383 112 0 3 chr3 167573044 167573357 -50463801 - AluSx SINE Alu 0 312 1 33 43 0 0 chr3 167573401 167573448 -50463710 + AT_rich Low_complexity Low_complexity 1 47 0 253 315 0 0 chr3 167574118 167574191 -50462967 + L1MDb LINE L1 329 401 -6142 1952 209 81 42 chr3 167574430 167574970 -50462188 + L1MDb LINE L1 1129 1711 -4829 2372 107 3 0 chr3 167574970 167575279 -50461879 + AluSx SINE Alu 1 310 -2 1952 209 81 42 chr3 167575279 167575531 -50461627 + L1MDb LINE L1 1711 1952 -4588 267 242 0 0 chr3 167575556 167575622 -50461536 + L1MDb LINE L1 2107 2172 -4368 2392 159 17 5 chr3 167575662 167576083 -50461075 + Tigger3b DNA MER2_type 1 426 -805 1689 123 80 0 chr3 167576091 167576342 -50460816 + AluSp SINE Alu 38 308 -5 440 83 0 42 chr3 167576345 167576441 -50460717 + (GAA)n Simple_repeat Simple_repeat 1 92 0 789 162 0 7 chr3 167576441 167576583 -50460575 + Tigger3b DNA MER2_type 407 547 -684 603 153 10 0 chr3 167576586 167576684 -50460474 - AluJo SINE Alu -176 136 38 3460 142 31 16 chr3 167576684 167577369 -50459789 + Tigger3b DNA MER2_type 537 1231 0 1156 239 59 20 chr3 167577375 167577950 -50459208 + L1MDb LINE L1 2226 2830 -3710 1236 222 3 23 chr3 167577965 167578204 -50458954 + L1MDb LINE L1 3091 3322 -3218 2503 75 0 3 chr3 167578204 167578510 -50458648 + AluSg SINE Alu 1 305 -5 1236 222 3 23 chr3 167578510 167578622 -50458536 + L1MDb LINE L1 3322 3435 -3105 531 289 70 63 chr3 167578903 167579318 -50457840 - L1ME4a LINE L1 -79 6042 5625 22 0 0 0 chr3 167579326 167579348 -50457810 + AT_rich Low_complexity Low_complexity 1 22 0 1106 16 0 0 chr3 167579349 167579475 -50457683 - L1PA2 LINE L1 -7 6148 6023 5212 137 20 5 chr3 167580063 167581303 -50455855 + L1PA16 LINE L1 4906 6157 -9 449 353 45 5 chr3 167581769 167581854 -50455304 - MIR SINE MIR -23 239 159 2450 80 0 16 chr3 167581854 167582166 -50454992 - AluSg SINE Alu -3 307 1 449 353 45 5 chr3 167582166 167582281 -50454877 - MIR SINE MIR -103 159 31 318 26 0 0 chr3 167582856 167582895 -50454263 + (CA)n Simple_repeat Simple_repeat 2 40 0 23 0 0 0 chr3 167583270 167583293 -50453865 + AT_rich Low_complexity Low_complexity 1 23 0 192 257 27 40 chr3 167583410 167583484 -50453674 - MIR SINE MIR -110 152 80 1192 177 51 123 chr3 167583533 167583923 -50453235 - MLT1A1 LTR MaLR -3 362 1 289 278 0 4 chr3 167584915 167585037 -50452121 - MER5A DNA MER1_type -1 188 22 664 177 69 15 chr3 167585086 167585216 -50451942 + MER5A DNA MER1_type 53 189 0 381 180 45 163 chr3 167585228 167585273 -50451885 + MER5B DNA MER1_type 4 53 -125 1873 221 28 15 chr3 167585273 167585730 -50451428 + MLT1C LTR MaLR 5 467 0 381 180 45 163 chr3 167585730 167585762 -50451396 + MER5B DNA MER1_type 53 87 -91 330 45 0 0 chr3 167585762 167585806 -50451352 + (CA)n Simple_repeat Simple_repeat 1 44 0 381 180 45 163 chr3 167585806 167585905 -50451253 + MER5B DNA MER1_type 87 160 -18 463 342 16 21 chr3 167586046 167586236 -50450922 + MER5A DNA MER1_type 1 189 0 513 252 178 0 chr3 167586467 167586602 -50450556 + MER5A DNA MER1_type 31 189 0 1031 181 24 29 chr3 167586718 167586928 -50450230 + MER3 DNA MER1_type 1 209 0 2311 77 30 0 chr3 167587926 167588226 -50448932 - AluY SINE Alu -2 309 1 774 156 16 0 chr3 167588313 167588435 -50448723 - FLAM_C SINE Alu -19 124 1 206 416 67 38 chr3 167588518 167588727 -50448431 - L2 LINE L2 -86 3186 2972 285 332 179 5 chr3 167589196 167589392 -50447766 + MIR SINE MIR 28 257 -5 2161 94 4 0 chr3 167589925 167590201 -50446957 + AluSp SINE Alu 1 277 -36 718 191 20 12 chr3 167590203 167590449 -50446709 + GA-rich Low_complexity Low_complexity 1 248 0 1674 167 26 4 chr3 167590460 167590730 -50446428 + AluJo SINE Alu 7 282 -30 2178 122 0 0 chr3 167590817 167591111 -50446047 + AluSx SINE Alu 1 294 -18 207 69 0 0 chr3 167591111 167591140 -50446018 + (TA)n Simple_repeat Simple_repeat 1 29 0 218 324 155 0 chr3 167591531 167591673 -50445485 - MIR SINE MIR -14 248 85 431 306 126 8 chr3 167591899 167592154 -50445004 - LTR33 LTR ERVL 0 521 237 230 224 0 92 chr3 167592216 167592237 -50444921 + L1PB4 LINE L1 5311 5332 -824 2369 95 3 0 chr3 167592237 167592542 -50444616 + AluSg SINE Alu 1 306 -4 230 224 0 92 chr3 167592542 167592618 -50444540 + L1PB4 LINE L1 5332 5399 -757 180 111 0 0 chr3 167593344 167593371 -50443787 + (T)n Simple_repeat Simple_repeat 1 27 0 21 36 0 0 chr3 167593854 167593882 -50443276 + GC_rich Low_complexity Low_complexity 1 28 0 4129 146 11 21 chr3 167594191 167594450 -50442708 + L1PB4 LINE L1 5415 5675 -481 2375 99 0 22 chr3 167594450 167594762 -50442396 + AluSg SINE Alu 1 305 -5 4129 146 11 21 chr3 167594762 167594887 -50442271 + L1PB4 LINE L1 5675 5800 -356 252 0 0 0 chr3 167594887 167594915 -50442243 + (CA)n Simple_repeat Simple_repeat 2 29 0 4129 146 11 21 chr3 167594915 167595277 -50441881 + L1PB4 LINE L1 5800 6154 -2 891 217 14 0 chr3 167595313 167595525 -50441633 - L1MB5 LINE L1 -343 5831 5617 555 225 7 14 chr3 167595872 167596014 -50441144 - L1MB5 LINE L1 -578 5602 5462 324 250 26 0 chr3 167596179 167596255 -50440903 - L2 LINE L2 -10 3303 3226 1648 212 58 57 chr3 167596300 167596796 -50440362 - MLT1D LTR MaLR -2 503 7 2364 208 55 20 chr3 167596868 167597518 -50439640 + L1MD3 LINE L1 7317 7989 -6 182 393 0 0 chr3 167597560 167597616 -50439542 + MER5B DNA MER1_type 52 107 -71 883 277 40 119 chr3 167597688 167598233 -50438925 + L2 LINE L2 2812 3313 0 272 163 0 0 chr3 167598667 167598710 -50438448 + L2 LINE L2 3226 3268 -4 22 35 0 0 chr3 167598854 167598883 -50438275 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 167599170 167599192 -50437966 + AT_rich Low_complexity Low_complexity 1 22 0 290 393 60 49 chr3 167599325 167599610 -50437548 - L2 LINE L2 -4 3268 2981 * 779 346 134 19 chr3 167599587 167600365 -50436793 - L2 LINE L2 -1257 2057 1191 724 255 55 41 chr3 167600600 167600871 -50436287 + MER102a DNA MER1_type 45 319 -11 260 240 171 55 chr3 167600892 167601109 -50436049 + L2 LINE L2 2224 2465 -849 2506 87 13 51 chr3 167601178 167601568 -50435590 + THE1C LTR MaLR 1 375 0 374 366 116 39 chr3 167601676 167602064 -50435094 + L2 LINE L2 2852 3269 -3 2376 60 0 3 chr3 167602307 167602591 -50434567 + AluY SINE Alu 29 311 0 22 0 0 0 chr3 167603867 167603889 -50433269 + AT_rich Low_complexity Low_complexity 1 22 0 1655 171 0 21 chr3 167604055 167604341 -50432817 + AluJb SINE Alu 1 280 -32 517 309 166 23 chr3 167606694 167607037 -50430121 - L2 LINE L2 -25 3288 2897 31 26 0 0 chr3 167608069 167608107 -50429051 + AT_rich Low_complexity Low_complexity 1 38 0 209 239 43 19 chr3 167608123 167608196 -50428962 - MIR SINE MIR -92 116 39 22 56 0 0 chr3 167608584 167608620 -50428538 + AT_rich Low_complexity Low_complexity 1 36 0 2295 105 0 3 chr3 167608740 167609053 -50428105 + AluSq SINE Alu 1 312 -1 305 329 7 26 chr3 167609585 167609737 -50427421 - L1MEd LINE L1 -5490 629 481 2276 97 3 3 chr3 167609799 167610099 -50427059 - AluSx SINE Alu -12 300 1 260 250 86 36 chr3 167610310 167610450 -50426708 - L1MEd LINE L1 -5955 164 18 1669 269 54 41 chr3 167610561 167611501 -50425657 + L2 LINE L2 2353 3313 0 285 325 57 8 chr3 167611794 167611917 -50425241 + MIR SINE MIR 11 139 -123 180 111 0 0 chr3 167613900 167613927 -50423231 + (T)n Simple_repeat Simple_repeat 1 27 0 1725 34 91 0 chr3 167613932 167614141 -50423017 - SVA Other Other -3 1383 1156 779 304 70 26 chr3 167614144 167614644 -50422514 - MLT1K LTR MaLR -9 579 58 2347 112 0 0 chr3 167614836 167615139 -50422019 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr3 167615533 167615554 -50421604 + AT_rich Low_complexity Low_complexity 1 21 0 381 148 0 0 chr3 167615786 167615867 -50421291 + (TG)n Simple_repeat Simple_repeat 2 82 0 183 299 104 22 chr3 167616764 167616898 -50420260 + L2 LINE L2 2783 2927 -387 267 353 71 18 chr3 167619660 167619830 -50417328 - MIR SINE MIR -6 256 78 180 0 0 0 chr3 167619914 167619934 -50417224 + (A)n Simple_repeat Simple_repeat 1 20 0 223 377 0 0 chr3 167620219 167620296 -50416862 - L2 LINE L2 -10 3303 3227 2018 89 15 89 chr3 167620594 167620931 -50416227 - AluSx SINE Alu 0 312 1 195 301 75 38 chr3 167621237 167621370 -50415788 - MIR3 SINE MIR -68 140 3 240 35 0 0 chr3 167621891 167621920 -50415238 + (TTTTTG)n Simple_repeat Simple_repeat 3 31 0 288 283 10 0 chr3 167622978 167623077 -50414081 - MER94 DNA DNA -34 100 1 1752 166 17 10 chr3 167623142 167623437 -50413721 + AluJo SINE Alu 1 297 -15 457 272 31 22 chr3 167623715 167623943 -50413215 - L1ME4a LINE L1 -177 5944 5715 288 333 87 0 chr3 167624172 167624310 -50412848 + L2 LINE L2 2294 2443 -871 490 360 166 17 chr3 167624370 167624987 -50412171 + L2 LINE L2 2578 3272 0 1296 154 61 27 chr3 167625116 167625469 -50411689 - Charlie5 DNA MER1_type -1 2623 2255 1982 149 0 3 chr3 167625469 167625771 -50411387 + AluJo SINE Alu 1 301 -11 1296 154 61 27 chr3 167625771 167625793 -50411365 - Charlie5 DNA MER1_type -369 2255 2235 22 0 0 0 chr3 167625813 167625835 -50411323 + AT_rich Low_complexity Low_complexity 1 22 0 2098 133 0 0 chr3 167625837 167626137 -50411021 + AluSx SINE Alu 1 300 -12 519 191 14 57 chr3 167626137 167626174 -50410984 - MER3 DNA MER1_type 0 162 125 1980 159 3 0 chr3 167626174 167626470 -50410688 + AluJo SINE Alu 1 297 -15 519 191 14 57 chr3 167626470 167626573 -50410585 - MER3 DNA MER1_type -37 125 28 241 220 0 0 chr3 167627237 167627287 -50409871 + CT-rich Low_complexity Low_complexity 2 51 0 2415 93 0 0 chr3 167627722 167628032 -50409126 + AluY SINE Alu 1 310 -1 684 225 85 10 chr3 167628075 167628275 -50408883 - MER58C DNA MER1_type 0 215 1 637 273 118 25 chr3 167628689 167628910 -50408248 - MIR SINE MIR 0 262 16 1001 200 115 0 chr3 167628910 167629110 -50408048 - MER58A DNA MER1_type 0 224 2 637 273 118 25 chr3 167629110 167629126 -50408032 - MIR SINE MIR -246 16 3 522 256 160 0 chr3 167629119 167629275 -50407883 - MER5A DNA MER1_type 0 189 9 * 654 341 93 43 chr3 167629413 167630196 -50406962 + L2 LINE L2 2389 3220 -93 414 299 111 18 chr3 167630337 167630554 -50406604 - MIR SINE MIR -20 242 6 2793 16 0 0 chr3 167630837 167631145 -50406013 - AluY SINE Alu -3 308 1 397 347 12 0 chr3 167631907 167632074 -50405084 - MER117 DNA MER1_type 0 197 29 321 296 30 0 chr3 167633166 167633298 -50403860 + L1ME3 LINE L1 4620 4755 -1391 2096 114 7 7 chr3 167633339 167633629 -50403529 + AluSx SINE Alu 1 290 -22 642 284 37 0 chr3 167634081 167634299 -50402859 + L1ME3 LINE L1 5848 6073 -89 207 100 0 0 chr3 167634347 167634377 -50402781 + (CA)n Simple_repeat Simple_repeat 1 30 0 271 328 8 8 chr3 167634445 167634579 -50402579 + HAL1 LINE L1 1391 1524 -983 413 195 167 70 chr3 167634770 167634856 -50402302 - Charlie4a DNA MER1_type -1652 309 233 1985 109 25 11 chr3 167634856 167635139 -50402019 + AluSx SINE Alu 1 287 -25 413 195 167 70 chr3 167635139 167635267 -50401891 - Charlie4a DNA MER1_type -1728 233 74 377 287 70 38 chr3 167635276 167635433 -50401725 + MIR SINE MIR 35 196 -66 720 178 132 0 chr3 167636425 167636577 -50400581 - MER7A DNA MER2_type -175 171 2 10195 96 7 1 chr3 167636609 167638045 -50399113 - THE1A-int LTR MaLR -135 1445 1 1226 99 28 0 chr3 167638045 167638227 -50398931 - THE1A LTR MaLR 0 355 169 2044 97 0 0 chr3 167638227 167638484 -50398674 - AluSq SINE Alu -56 257 1 529 161 62 197 chr3 167638513 167638787 -50398371 - MER21B LTR ERV1 -623 240 4 185 342 53 53 chr3 167638807 167638959 -50398199 - L2 LINE L2 -743 2571 2420 1731 225 65 103 chr3 167639242 167639963 -50397195 - LTR8A LTR ERV1 0 727 34 227 277 0 15 chr3 167640121 167640186 -50396972 + MLT-int LTR MaLR 292 355 -1380 1946 173 0 10 chr3 167640666 167640979 -50396179 - AluSx SINE Alu -2 310 1 731 246 118 103 chr3 167641756 167642288 -50394870 + MLT1G1 LTR MaLR 3 595 0 2736 287 72 27 chr3 167643191 167644126 -50393032 + L2 LINE L2 1915 2929 -384 830 134 8 15 chr3 167644126 167644260 -50392898 - FLAM_C SINE Alu 0 133 1 2736 287 72 27 chr3 167644260 167644661 -50392497 + L2 LINE L2 2929 3310 -3 1035 221 36 40 chr3 167645089 167645338 -50391820 + AluJo SINE Alu 42 289 -23 24 32 0 0 chr3 167645888 167645919 -50391239 + AT_rich Low_complexity Low_complexity 1 31 0 365 379 0 9 chr3 167646455 167646571 -50390587 + MIR SINE MIR 19 133 -75 1935 79 8 0 chr3 167646945 167647198 -50389960 + L1PA7 LINE L1 5900 6154 0 2446 60 0 7 chr3 167647205 167647504 -50389654 + AluY SINE Alu 1 297 -14 350 285 16 32 chr3 167647908 167648031 -50389127 - L2 LINE L2 0 3313 3193 39 50 0 0 chr3 167649002 167649062 -50388096 + AT_rich Low_complexity Low_complexity 1 60 0 262 238 25 12 chr3 167649263 167649343 -50387815 + MIR SINE MIR 133 213 -49 1369 106 0 0 chr3 167649569 167649748 -50387410 + AluSp SINE Alu 135 313 0 1391 203 24 38 chr3 167649843 167650133 -50387025 - AluJo SINE Alu -26 286 1 235 348 95 0 chr3 167650508 167650641 -50386517 + MIR SINE MIR 43 186 -67 1833 134 47 30 chr3 167652165 167652463 -50384695 + AluJb SINE Alu 1 303 -9 865 303 182 4 chr3 167652858 167653359 -50383799 + L2 LINE L2 2185 2774 -540 2253 120 0 0 chr3 167653367 167653659 -50383499 + AluSq SINE Alu 1 292 -21 425 363 115 16 chr3 167653767 167653956 -50383202 + L2 LINE L2 2926 3095 -218 2366 154 13 0 chr3 167653956 167654339 -50382819 - MLT1B LTR MaLR -1 389 2 425 363 115 16 chr3 167654339 167654471 -50382687 + L2 LINE L2 3095 3279 -34 1674 145 88 26 chr3 167654595 167654946 -50382212 + THE1C LTR MaLR 1 373 -2 37 39 0 0 chr3 167654958 167655009 -50382149 + AT_rich Low_complexity Low_complexity 1 51 0 35358 61 6 13 chr3 167655195 167660898 -50376260 + L1PA5 LINE L1 495 6154 0 371 292 71 0 chr3 167660963 167661076 -50376082 + L2 LINE L2 3193 3313 0 29 84 0 0 chr3 167661626 167661697 -50375461 + AT_rich Low_complexity Low_complexity 1 71 0 23 33 0 0 chr3 167662130 167662160 -50374998 + AT_rich Low_complexity Low_complexity 1 30 0 607 258 26 38 chr3 167662243 167662507 -50374651 + L1MA9 LINE L1 5072 5332 -814 741 158 0 18 chr3 167662514 167662671 -50374487 + FLAM_C SINE Alu 9 163 0 1489 133 20 37 chr3 167662671 167662965 -50374193 + L1MA9 LINE L1 5322 5610 -702 1680 144 18 25 chr3 167663077 167663404 -50373754 + L1MA9 LINE L1 5572 5896 -416 660 234 86 41 chr3 167663680 167664106 -50373052 - MLT1G3 LTR MaLR -11 584 54 1905 114 55 7 chr3 167664118 167664407 -50372751 - AluSx SINE Alu -9 303 1 2082 131 0 0 chr3 167665307 167665590 -50371568 + AluSx SINE Alu 1 335 0 387 19 0 19 chr3 167665590 167665642 -50371516 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 510 253 44 38 chr3 167665772 167665930 -50371228 - L2 LINE L2 -3 3310 3152 2373 188 12 86 chr3 167665998 167666157 -50371001 - MLT2B3 LTR ERVL -2 552 383 216 0 0 0 chr3 167666157 167666181 -50370977 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1587 102 51 0 chr3 167666181 167666416 -50370742 - L1PB1 LINE L1 -11 6140 5894 2373 188 12 86 chr3 167666416 167666549 -50370609 - MLT2B3 LTR ERVL -170 384 243 7933 62 6 3 chr3 167666549 167667553 -50369605 + LTR13 LTR ERVK 1 1007 0 2373 188 12 86 chr3 167667553 167667854 -50369304 - MLT2B3 LTR ERVL -311 243 1 249 207 17 0 chr3 167668138 167668196 -50368962 + LTR33 LTR ERVL 401 459 -62 214 288 0 17 chr3 167668331 167668390 -50368768 - L2 LINE L2 -252 3061 3004 25 31 0 0 chr3 167668405 167668437 -50368721 + AT_rich Low_complexity Low_complexity 1 32 0 356 246 8 0 chr3 167668518 167668640 -50368518 + (TA)n Simple_repeat Simple_repeat 2 124 0 311 287 68 57 chr3 167668653 167668873 -50368285 - L1ME2 LINE L1 -230 5940 5712 2005 122 35 11 chr3 167669149 167669436 -50367722 - AluSg SINE Alu -16 294 1 1299 120 16 0 chr3 167670131 167670315 -50366843 - AluSg/x SINE Alu -16 296 110 364 278 57 42 chr3 167670495 167670653 -50366505 + L2 LINE L2 2344 2507 -807 2117 111 9 32 chr3 167670653 167670969 -50366189 + AluSx SINE Alu 1 309 -3 364 278 57 42 chr3 167670969 167671022 -50366136 + L2 LINE L2 2507 2558 -756 987 179 12 0 chr3 167671123 167671291 -50365867 - AluSg/x SINE Alu -10 302 133 434 298 121 26 chr3 167671524 167671791 -50365367 - L2 LINE L2 -845 2469 2177 487 252 30 15 chr3 167671791 167671922 -50365236 + MER5B DNA MER1_type 1 133 -45 2026 129 4 0 chr3 167671935 167672240 -50364918 + AluSx SINE Alu 6 311 0 2053 136 7 13 chr3 167672415 167672551 -50364607 + AluSx SINE Alu 1 136 -176 1997 120 65 0 chr3 167672551 167672671 -50364487 + AluSq SINE Alu 1 112 -201 188 35 35 0 chr3 167672671 167672700 -50364458 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 1997 120 65 0 chr3 167672700 167672871 -50364287 + AluSq SINE Alu 112 311 -2 2053 136 7 13 chr3 167672871 167673044 -50364114 + AluSx SINE Alu 136 308 -4 2366 53 0 0 chr3 167673763 167674077 -50363081 - AluY SINE Alu 0 314 1 2463 89 0 6 chr3 167675007 167675322 -50361836 - AluSp SINE Alu 0 313 1 2410 79 0 0 chr3 167675331 167675635 -50361523 - AluY SINE Alu -7 304 1 702 193 0 29 chr3 167676625 167676765 -50360393 + AluJo SINE Alu 1 136 -176 2080 130 13 0 chr3 167676788 167677089 -50360069 + AluSx SINE Alu 1 305 -7 321 100 0 0 chr3 167677197 167677247 -50359911 + (CA)n Simple_repeat Simple_repeat 1 50 0 22 0 0 0 chr3 167677434 167677456 -50359702 + AT_rich Low_complexity Low_complexity 1 22 0 803 169 0 0 chr3 167677456 167677574 -50359584 - AluJb SINE Alu -194 118 1 1769 129 17 53 chr3 167677732 167678034 -50359124 + AluJb SINE Alu 11 301 -11 443 131 176 25 chr3 167678170 167678336 -50358822 + LTR29 LTR ERV1 1 275 -347 * 756 173 89 32 chr3 167678333 167678609 -50358549 + LTR49 LTR ERV1 313 595 0 4141 110 2 0 chr3 167678660 167679251 -50357907 + L1PA13 LINE L1 5565 6156 -7 241 47 47 0 chr3 167680147 167680190 -50356968 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 1741 189 4 0 chr3 167680192 167680472 -50356686 - AluJb SINE Alu -31 281 1 595 198 0 9 chr3 167680504 167680610 -50356548 + FLAM_C SINE Alu 14 118 -25 447 19 0 0 chr3 167680616 167680668 -50356490 + (GAAAA)n Simple_repeat Simple_repeat 2 53 0 2590 45 3 0 chr3 167681055 167681364 -50355794 + AluY SINE Alu 1 310 -1 723 323 25 4 chr3 167681450 167681685 -50355473 + MIR SINE MIR 11 250 -12 201 342 0 13 chr3 167681731 167681807 -50355351 + L3 LINE CR1 1389 1463 -114 403 306 30 8 chr3 167681811 167681945 -50355213 + MIR SINE MIR 18 154 -108 239 226 57 0 chr3 167682000 167682053 -50355105 - L2 LINE L2 -12 3260 3205 201 121 0 0 chr3 167682057 167682090 -50355068 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 326 341 98 0 chr3 167682255 167682378 -50354780 - MER5B DNA MER1_type -43 135 1 731 152 230 18 chr3 167683131 167683320 -50353838 - AluJb SINE Alu 0 308 85 2340 75 0 3 chr3 167684093 167684386 -50352772 + AluSc SINE Alu 1 292 -17 2045 139 21 0 chr3 167684754 167685041 -50352117 + AluSx SINE Alu 1 293 -19 216 0 0 0 chr3 167685089 167685113 -50352045 + (GA)n Simple_repeat Simple_repeat 2 25 0 339 289 148 0 chr3 167685313 167685455 -50351703 + MLT1L LTR MaLR 289 451 -164 30 62 0 25 chr3 167685668 167685723 -50351435 + AT_rich Low_complexity Low_complexity 1 55 -23 2227 114 0 7 chr3 167685723 167686031 -50351127 - AluSx SINE Alu -6 306 1 30 62 0 25 chr3 167686031 167686055 -50351103 + AT_rich Low_complexity Low_complexity 55 78 0 42 82 0 0 chr3 167686258 167686356 -50350802 + AT_rich Low_complexity Low_complexity 1 98 0 332 194 0 15 chr3 167686358 167686425 -50350733 - L1MD1 LINE L1 -46 6196 6131 35 0 0 0 chr3 167686436 167686471 -50350687 + AT_rich Low_complexity Low_complexity 1 35 0 1142 198 59 46 chr3 167686475 167686526 -50350632 - L1MD2 LINE L1 -121 6238 6189 2005 115 62 0 chr3 167686526 167686814 -50350344 - AluY SINE Alu -5 306 1 1142 198 59 46 chr3 167686814 167687085 -50350073 - L1MD2 LINE L1 -170 6189 5912 2044 97 0 24 chr3 167687107 167687420 -50349738 - AluSx SINE Alu 0 306 1 1092 168 115 4 chr3 167687420 167687664 -50349494 - L1MD2 LINE L1 -575 5784 5514 543 284 45 8 chr3 167687764 167687898 -50349260 + MIR SINE MIR 46 184 -78 1968 154 0 23 chr3 167688354 167688659 -50348499 - AluJb SINE Alu -14 298 1 1470 83 0 0 chr3 167688901 167689081 -50348077 - AluSg/x SINE Alu -19 291 112 2450 87 0 3 chr3 167689135 167689447 -50347711 + AluSq SINE Alu 1 311 -2 24 32 0 0 chr3 167691816 167691847 -50345311 + AT_rich Low_complexity Low_complexity 1 31 0 786 314 42 22 chr3 167691876 167692236 -50344922 + MLT1J LTR MaLR 1 367 -144 1019 174 0 6 chr3 167692248 167692435 -50344723 + AluJb SINE Alu 125 310 0 261 180 0 0 chr3 167692557 167692607 -50344551 + (TATATG)n Simple_repeat Simple_repeat 4 53 0 2256 108 0 0 chr3 167692655 167692951 -50344207 + AluSx SINE Alu 1 296 -16 539 106 24 0 chr3 167693097 167693182 -50343976 + MLT1J LTR MaLR 401 487 -55 211 358 104 20 chr3 167693503 167693704 -50343454 - MIR SINE MIR -7 255 38 1530 170 150 28 chr3 167693790 167694143 -50343015 - MSTD LTR MaLR 0 396 1 293 223 107 8 chr3 167694432 167694553 -50342605 - MER58C DNA MER1_type -3 212 80 2192 122 0 0 chr3 167694988 167695282 -50341876 - AluSq SINE Alu -19 294 1 245 153 34 0 chr3 167696956 167697015 -50340143 + T-rich Low_complexity Low_complexity 5 65 0 2045 127 30 3 chr3 167697106 167697406 -50339752 - AluSq SINE Alu -5 308 1 2065 74 18 109 chr3 167698554 167698892 -50338266 + AluSx SINE Alu 6 312 0 304 303 0 0 chr3 167698892 167698981 -50338177 - L1MC4 LINE L1 -1339 6703 6615 29 47 0 0 chr3 167699068 167699111 -50338047 + AT_rich Low_complexity Low_complexity 1 43 0 903 126 7 0 chr3 167699121 167699256 -50337902 + AluJo SINE Alu 1 136 -176 309 287 88 73 chr3 167699259 167699347 -50337811 + HAL1b LINE L1 109 194 -1154 2318 91 0 25 chr3 167699347 167699666 -50337492 + AluY SINE Alu 1 311 0 309 287 88 73 chr3 167699666 167699838 -50337320 + HAL1b LINE L1 194 373 -975 399 208 10 20 chr3 167699842 167699943 -50337215 + L1ME3A LINE L1 6037 6136 -34 570 290 90 22 chr3 167700005 167700326 -50336832 + L1MC4a LINE L1 2435 2777 -3369 2314 89 3 0 chr3 167700357 167700648 -50336510 + AluSp SINE Alu 1 292 -21 562 311 113 52 chr3 167700658 167701102 -50336056 + L1MC4a LINE L1 3505 3975 -2171 585 284 88 12 chr3 167701336 167701745 -50335413 + L1MC4a LINE L1 4102 4541 -1605 646 325 23 16 chr3 167701828 167702133 -50335025 + MER93a LTR ERV1 67 373 -29 667 204 49 0 chr3 167702136 167702309 -50334849 + AluJo SINE Alu 134 313 0 428 226 54 0 chr3 167702526 167702653 -50334505 + L1ME LINE L1 5701 5837 -284 695 344 54 29 chr3 167702694 167703174 -50333984 + L1MC4a LINE L1 4735 5226 -920 745 281 43 86 chr3 167703233 167703339 -50333819 + L1MC4a LINE L1 5307 5416 -2392 1753 187 3 16 chr3 167703339 167703475 -50333683 + AluJo SINE Alu 1 137 -175 2370 100 0 6 chr3 167703475 167703786 -50333372 + AluSq SINE Alu 1 309 -4 1753 187 3 16 chr3 167703786 167703954 -50333204 + AluJo SINE Alu 137 301 -11 745 281 43 86 chr3 167703954 167704498 -50332660 + L1MC4a LINE L1 5416 5929 -1879 1178 106 0 0 chr3 167705020 167705171 -50331987 - AluSg/x SINE Alu -17 293 143 387 333 149 0 chr3 167705287 167705461 -50331697 + MIR SINE MIR 27 226 -36 739 204 6 0 chr3 167705784 167705941 -50331217 + LTR54B LTR ERV1 1 158 -340 917 116 63 58 chr3 167706011 167706201 -50330957 + LTR54 LTR ERV1 320 510 0 264 362 0 13 chr3 167706449 167706598 -50330560 + MLT1L LTR MaLR 469 615 0 1981 104 4 4 chr3 167707177 167707445 -50329713 + AluSq SINE Alu 1 268 -45 25 75 0 0 chr3 167707445 167707498 -50329660 + AT_rich Low_complexity Low_complexity 1 53 0 2251 98 3 7 chr3 167707769 167708066 -50329092 + AluSx SINE Alu 1 296 -16 38 0 0 0 chr3 167708068 167708106 -50329052 + AT_rich Low_complexity Low_complexity 1 38 0 197 260 52 52 chr3 167708181 167708277 -50328881 + MIR SINE MIR 167 262 0 2315 113 0 0 chr3 167708278 167708579 -50328579 - AluSx SINE Alu -11 301 1 1911 139 10 26 chr3 167709375 167709678 -50327480 + AluJo SINE Alu 5 302 -10 2263 105 7 0 chr3 167710820 167711115 -50326043 + AluSq SINE Alu 1 297 -16 1960 135 3 3 chr3 167711808 167712096 -50325062 + AluJo SINE Alu 6 293 -19 2341 101 3 0 chr3 167712098 167712406 -50324752 + AluY SINE Alu 1 309 -2 1161 82 6 16 chr3 167712440 167712455 -50324703 + (GAAA)n Simple_repeat Simple_repeat 1 194 0 1161 82 6 16 chr3 167712455 167712637 -50324521 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 525 204 32 57 chr3 167712928 167713085 -50324073 - MIR SINE MIR -25 237 85 398 341 35 18 chr3 167713442 167713668 -50323490 + L2 LINE L2 2700 2929 -385 322 322 82 14 chr3 167713671 167713817 -50323341 + MER5A DNA MER1_type 4 159 -30 234 304 50 75 chr3 167714250 167714368 -50322790 - L2 LINE L2 -212 3060 2946 2265 105 0 3 chr3 167714368 167714673 -50322485 + AluSc SINE Alu 1 304 -5 234 304 50 75 chr3 167714673 167714715 -50322443 - L2 LINE L2 -326 2946 2904 209 189 0 0 chr3 167714965 167715002 -50322156 + (TG)n Simple_repeat Simple_repeat 2 38 0 446 344 102 9 chr3 167715122 167715337 -50321821 + MIR SINE MIR 7 241 -21 232 243 46 84 chr3 167715340 167715538 -50321620 + MIR SINE MIR 5 249 -13 245 196 0 0 chr3 167716194 167716245 -50320913 + T-rich Low_complexity Low_complexity 1 51 0 2138 123 0 0 chr3 167716410 167716703 -50320455 + AluSx SINE Alu 1 293 -19 2170 118 16 7 chr3 167716740 167717046 -50320112 + AluSx SINE Alu 1 309 -3 276 219 47 16 chr3 167717742 167717806 -50319352 + AluJ/FRAM SINE Alu 228 293 -9 662 179 172 7 chr3 167718818 167718963 -50318195 + MER96 DNA MER1_type 5 173 -2 192 26 53 26 chr3 167719598 167719636 -50317522 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2074 119 11 0 chr3 167719640 167719918 -50317240 - AluSx SINE Alu -21 291 11 1882 141 0 58 chr3 167720443 167720579 -50316579 + AluSx SINE Alu 1 143 -169 2367 89 0 16 chr3 167720579 167720895 -50316263 + AluSx SINE Alu 1 311 -1 1882 141 0 58 chr3 167720895 167721084 -50316074 + AluSx SINE Alu 143 307 -5 242 200 25 38 chr3 167721434 167721514 -50315644 - L1ME4a LINE L1 -1 6120 6042 280 171 0 29 chr3 167721517 167721587 -50315571 + GA-rich Low_complexity Low_complexity 4 71 0 23 0 0 0 chr3 167721744 167721767 -50315391 + AT_rich Low_complexity Low_complexity 1 23 0 290 253 193 33 chr3 167722043 167722193 -50314965 + L2 LINE L2 3120 3293 -20 221 190 0 17 chr3 167722821 167722879 -50314279 + (TAAA)n Simple_repeat Simple_repeat 3 59 0 540 272 85 78 chr3 167722966 167723238 -50313920 - L1MEd LINE L1 -1121 1369 999 1985 154 3 3 chr3 167723238 167723531 -50313627 - AluJb SINE Alu -19 293 1 540 272 85 78 chr3 167723531 167723687 -50313471 - L1MEd LINE L1 -1491 999 846 1773 174 0 3 chr3 167723722 167724009 -50313149 - AluJb SINE Alu -26 286 1 400 55 18 0 chr3 167724692 167724747 -50312411 - Alu SINE Alu -254 57 2 234 292 62 31 chr3 167724828 167724912 -50312246 + L2 LINE L2 3214 3303 -10 2372 75 0 43 chr3 167724912 167725234 -50311924 + AluY SINE Alu 1 308 -3 234 292 62 31 chr3 167725234 167725245 -50311913 + L2 LINE L2 3303 3312 -1 1383 194 12 69 chr3 167725765 167726084 -50311074 + AluJo SINE Alu 1 301 -11 197 222 0 0 chr3 167727235 167727271 -50309887 + MER5B DNA MER1_type 20 55 -123 243 240 0 0 chr3 167727272 167727322 -50309836 + Tigger5 DNA MER2_type 1 50 -2273 * 302 169 17 17 chr3 167727309 167727368 -50309790 + Tigger5 DNA MER2_type 2265 2323 0 2248 84 76 62 chr3 167727442 167727516 -50309642 - THE1B LTR MaLR -2 362 291 2212 92 0 20 chr3 167727516 167727819 -50309339 + AluSg SINE Alu 1 297 -13 2248 84 76 62 chr3 167727819 167728101 -50309057 - THE1B LTR MaLR -73 291 1 768 221 16 32 chr3 167728526 167728716 -50308442 - MIR SINE MIR 0 262 76 29 0 0 0 chr3 167728722 167728751 -50308407 + AT_rich Low_complexity Low_complexity 1 29 0 827 183 0 8 chr3 167728753 167728879 -50308279 - FLAM_C SINE Alu -17 126 2 1625 135 13 100 chr3 167728933 167729278 -50307880 - AluSx SINE Alu 0 319 2 2386 96 0 0 chr3 167729678 167729981 -50307177 - AluSx SINE Alu -9 303 1 1011 213 0 0 chr3 167729984 167730167 -50306991 - 7SLRNA srpRNA srpRNA -136 184 2 680 236 20 26 chr3 167730177 167730372 -50306786 - L1ME3 LINE L1 -1 6161 5968 1578 176 11 25 chr3 167730946 167731225 -50305933 - AluJo SINE Alu -37 275 1 289 122 0 0 chr3 167731573 167731614 -50305544 - LTR8 LTR ERV1 -104 587 547 2199 107 3 3 chr3 167731679 167731978 -50305180 - AluSx SINE Alu -13 299 1 31 44 0 0 chr3 167731978 167732023 -50305135 + AT_rich Low_complexity Low_complexity 1 45 0 2255 96 33 0 chr3 167732556 167732857 -50304301 - AluSq SINE Alu -2 311 1 433 334 51 15 chr3 167733831 167734007 -50303151 - MIR3 SINE MIR -15 193 11 226 317 0 0 chr3 167734267 167734327 -50302831 - MIR SINE MIR -61 147 88 2281 76 7 0 chr3 167734375 167734665 -50302493 + AluSx SINE Alu 1 292 -20 2471 78 0 3 chr3 167734665 167734973 -50302185 + AluY SINE Alu 1 307 -4 2136 82 16 49 chr3 167735657 167735962 -50301196 - AluSx SINE Alu -17 295 1 252 0 0 0 chr3 167736016 167736044 -50301114 + (T)n Simple_repeat Simple_repeat 1 28 0 336 222 139 67 chr3 167736994 167737135 -50300023 - L2 LINE L2 -6 3307 3149 1657 171 52 3 chr3 167737135 167737421 -50299737 + AluSx SINE Alu 1 300 -12 336 222 139 67 chr3 167737421 167737459 -50299699 - L2 LINE L2 -164 3149 3115 1117 239 88 7 chr3 167737482 167737779 -50299379 - MER58B DNA MER1_type -1 340 20 440 268 98 33 chr3 167737814 167737967 -50299191 - L2 LINE L2 -228 3085 2923 877 139 0 23 chr3 167738410 167738539 -50298619 + FLAM_C SINE Alu 1 126 -7 1057 201 0 11 chr3 167739878 167740057 -50297101 + MER45A DNA AcHobo 2 178 0 600 190 40 16 chr3 167740139 167740290 -50296868 - L1ME3A LINE L1 -208 5962 5815 233 192 0 96 chr3 167740348 167740421 -50296737 - L2 LINE L2 -649 2665 2600 831 273 21 60 chr3 167741420 167741702 -50295456 - MLT1F LTR MaLR -271 271 1 1280 124 0 0 chr3 167741750 167741928 -50295230 - AluSg/x SINE Alu -3 309 132 814 104 0 0 chr3 167741927 167742033 -50295125 + AluSg SINE Alu 24 129 -181 * 2188 120 0 7 chr3 167742163 167742471 -50294687 + AluSx SINE Alu 1 306 -6 26 64 0 0 chr3 167742479 167742526 -50294632 + AT_rich Low_complexity Low_complexity 1 47 0 391 290 66 54 chr3 167742606 167742885 -50294273 - MLT1L LTR MaLR -19 492 237 180 0 0 0 chr3 167743081 167743101 -50294057 + (TC)n Simple_repeat Simple_repeat 2 21 0 2030 139 21 0 chr3 167743153 167743440 -50293718 - AluSx SINE Alu -19 293 1 2358 75 0 3 chr3 167743808 167744101 -50293057 - AluSc SINE Alu -17 292 1 806 146 230 18 chr3 167744874 167745063 -50292095 + AluJb SINE Alu 85 308 0 325 341 98 0 chr3 167745816 167745939 -50291219 + MER5B DNA MER1_type 1 135 -43 201 121 0 0 chr3 167746104 167746137 -50291021 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 237 226 57 0 chr3 167746141 167746194 -50290964 + L2 LINE L2 3205 3260 -12 387 306 30 8 chr3 167746249 167746383 -50290775 - MIR SINE MIR -108 154 18 189 342 0 13 chr3 167746387 167746463 -50290695 - L3 LINE CR1 -114 1463 1389 701 323 25 4 chr3 167746509 167746744 -50290414 - MIR SINE MIR -12 250 11 2616 45 3 0 chr3 167746830 167747139 -50290019 - AluY SINE Alu -1 310 1 492 18 0 0 chr3 167747526 167747583 -50289575 + (TTTTC)n Simple_repeat Simple_repeat 2 58 0 636 198 0 9 chr3 167747589 167747695 -50289463 - FLAM_C SINE Alu -25 118 14 1502 152 54 57 chr3 167747727 167747875 -50289283 + AluJo SINE Alu 1 148 -164 2279 119 0 0 chr3 167747875 167748185 -50288973 + AluSx SINE Alu 1 310 -2 1502 152 54 57 chr3 167748185 167748332 -50288826 + AluJo SINE Alu 148 295 -17 2269 98 0 0 chr3 167748333 167748630 -50288528 + AluSx SINE Alu 1 297 -15 1994 106 6 64 chr3 167748724 167748866 -50288292 + AluSx SINE Alu 1 117 -195 2328 100 10 0 chr3 167748866 167749176 -50287982 + AluSp SINE Alu 1 313 0 1994 106 6 64 chr3 167749176 167749345 -50287813 + AluSx SINE Alu 117 294 -18 2277 66 28 0 chr3 167749741 167750027 -50287131 + AluY SINE Alu 1 294 -17 2158 98 0 16 chr3 167750157 167750474 -50286684 + AluSq SINE Alu 1 312 -1 2122 111 0 17 chr3 167751013 167751310 -50285848 + AluSq SINE Alu 1 292 -21 272 259 12 12 chr3 167751779 167751860 -50285298 + MLT1K LTR MaLR 481 561 -27 363 250 48 0 chr3 167751867 167751971 -50285187 + MIR SINE MIR 102 210 -52 315 276 130 8 chr3 167752555 167752678 -50284480 - MIR3 SINE MIR -50 158 21 722 210 78 78 chr3 167752917 167753136 -50284022 - MER20 DNA MER1_type 0 219 1 2375 94 3 0 chr3 167753660 167753968 -50283190 - AluSg SINE Alu -1 309 1 30 0 0 0 chr3 167754191 167754221 -50282937 + AT_rich Low_complexity Low_complexity 1 30 0 229 332 35 35 chr3 167755181 167755285 -50281873 - MER5A DNA MER1_type -73 116 2 1809 110 34 15 chr3 167755367 167755630 -50281528 + AluSx SINE Alu 35 302 -10 2095 108 4 0 chr3 167756000 167756279 -50280879 + AluSx SINE Alu 1 280 -32 235 70 0 47 chr3 167756279 167756322 -50280836 + (GGAA)n Simple_repeat Simple_repeat 2 42 0 403 194 19 0 chr3 167756351 167756454 -50280704 + GA-rich Low_complexity Low_complexity 4 108 0 2107 89 18 14 chr3 167756816 167757142 -50280016 - AluSp SINE Alu 0 327 1 2253 64 54 0 chr3 167757856 167758136 -50279022 - AluY SINE Alu -16 295 1 2367 57 7 3 chr3 167758426 167758725 -50278433 + AluY SINE Alu 1 300 -11 600 248 137 0 chr3 167759213 167759366 -50277792 - MER5A DNA MER1_type -7 182 9 1636 152 16 66 chr3 167759470 167759773 -50277385 + AluJo SINE Alu 1 288 -24 2386 78 7 0 chr3 167759970 167760265 -50276893 - AluSg SINE Alu -13 297 1 2383 74 7 13 chr3 167760938 167761113 -50276045 - AluSp SINE Alu -4 309 135 2241 82 41 0 chr3 167761113 167761404 -50275754 - AluY SINE Alu -8 303 1 2383 74 7 13 chr3 167761404 167761538 -50275620 - AluSp SINE Alu -178 135 2 2470 71 13 0 chr3 167761549 167761858 -50275300 - AluSp SINE Alu 0 313 1 2048 124 3 3 chr3 167762305 167762596 -50274562 - AluSx SINE Alu -19 293 3 484 160 80 20 chr3 167762688 167762788 -50274370 - MLT2D LTR ERVL -323 91 1 2485 83 3 0 chr3 167763384 167763696 -50273462 + AluSq SINE Alu 1 313 0 1286 135 31 35 chr3 167763702 167763725 -50273433 - Tigger2a DNA MER2_type -2479 229 207 1853 178 0 0 chr3 167763725 167764018 -50273140 + AluJb SINE Alu 1 293 -19 213 39 0 0 chr3 167764018 167764044 -50273114 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 1286 135 31 35 chr3 167764044 167764248 -50272910 - Tigger2a DNA MER2_type -2499 209 2 27 0 0 0 chr3 167764422 167764449 -50272709 + AT_rich Low_complexity Low_complexity 1 27 0 2454 53 3 3 chr3 167764559 167764861 -50272297 + AluY SINE Alu 1 302 -9 777 165 0 0 chr3 167765129 167765238 -50271920 + FLAM_C SINE Alu 9 117 -26 272 212 53 24 chr3 167765249 167765419 -50271739 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 2249 102 3 0 chr3 167765829 167766123 -50271035 - AluSx SINE Alu -17 295 1 265 340 60 20 chr3 167766307 167766407 -50270751 - L2 LINE L2 -50 3222 3119 2458 76 3 3 chr3 167766645 167766948 -50270210 - AluSx SINE Alu -9 303 1 484 160 80 20 chr3 167767545 167767645 -50269513 + MLT2D LTR ERVL 1 91 -323 2083 124 3 0 chr3 167767737 167768027 -50269131 + AluSx SINE Alu 3 293 -19 2470 71 13 0 chr3 167768475 167768784 -50268374 + AluSp SINE Alu 1 313 0 2383 74 7 13 chr3 167768795 167768929 -50268229 + AluSp SINE Alu 2 135 -178 2241 82 41 0 chr3 167768929 167769220 -50267938 + AluY SINE Alu 1 303 -8 2383 74 7 13 chr3 167769220 167769395 -50267763 + AluSp SINE Alu 135 309 -4 2386 78 7 0 chr3 167770067 167770362 -50266796 + AluSg SINE Alu 1 297 -13 1636 152 16 66 chr3 167770559 167770862 -50266296 - AluJo SINE Alu -24 288 1 600 248 137 0 chr3 167770966 167771119 -50266039 + MER5A DNA MER1_type 9 182 -7 1180 136 0 0 chr3 167771365 167771527 -50265631 + AluY SINE Alu 125 286 -25 774 242 11 0 chr3 167772032 167772222 -50264936 + L1PBa LINE L1 6 197 -6666 * 1372 192 4 0 chr3 167772219 167772469 -50264689 + L1PBa LINE L1 1392 1642 -5221 745 115 0 0 chr3 167772469 167772565 -50264593 - AluJ/FLAM SINE Alu -215 97 2 40 21 0 0 chr3 167772892 167772939 -50264219 + AT_rich Low_complexity Low_complexity 1 47 0 2104 132 10 3 chr3 167773119 167773429 -50263729 - AluSx SINE Alu 0 312 1 4691 155 21 40 chr3 167773606 167774105 -50263053 + L1PA16 LINE L1 5183 5653 -513 1644 183 3 28 chr3 167774105 167774395 -50262763 + AluJo SINE Alu 11 293 -19 4691 155 21 40 chr3 167774395 167774878 -50262280 + L1PA16 LINE L1 5653 6144 -22 2176 103 0 0 chr3 167775165 167775482 -50261676 + AluSx SINE Alu 1 317 0 216 0 0 0 chr3 167775953 167775977 -50261181 + (GGGGA)n Simple_repeat Simple_repeat 2 25 0 2089 102 20 0 chr3 167776455 167776748 -50260410 + AluSx SINE Alu 1 299 -13 1196 135 56 42 chr3 167776886 167777101 -50260057 + MER20 DNA MER1_type 2 219 0 763 183 0 0 chr3 167777971 167778097 -50259061 - FLAM_C SINE Alu -16 127 2 28 29 0 0 chr3 167778364 167778399 -50258759 + AT_rich Low_complexity Low_complexity 1 35 0 2152 121 7 0 chr3 167779046 167779343 -50257815 - AluSg1 SINE Alu -10 299 1 809 157 0 0 chr3 167780275 167780396 -50256762 + FLAM_C SINE Alu 1 121 -22 22 0 0 0 chr3 167780396 167780418 -50256740 + AT_rich Low_complexity Low_complexity 1 22 0 2180 101 3 0 chr3 167780424 167780711 -50256447 + AluSg SINE Alu 1 288 -22 2188 112 0 0 chr3 167780711 167781005 -50256153 + AluSg SINE Alu 1 294 -16 196 157 133 84 chr3 167781591 167781674 -50255484 - L2 LINE L2 -1 3312 3226 919 199 51 0 chr3 167782663 167782839 -50254319 + MER5A DNA MER1_type 1 185 -4 25 0 0 0 chr3 167785593 167785618 -50251540 + AT_rich Low_complexity Low_complexity 1 25 0 236 30 30 0 chr3 167786007 167786040 -50251118 + (CA)n Simple_repeat Simple_repeat 2 35 0 354 80 0 0 chr3 167786481 167786531 -50250627 + (A)n Simple_repeat Simple_repeat 1 50 0 326 319 123 49 chr3 167787493 167787860 -50249298 - L1M2 LINE L1 -5950 899 506 597 255 128 0 chr3 167789894 167790082 -50247076 - MIR SINE MIR -48 214 3 1160 261 254 11 chr3 167790153 167790705 -50246453 + MER115 DNA AcHobo 8 693 0 326 231 0 0 chr3 167790784 167790849 -50246309 + MIR SINE MIR 87 151 -111 2374 98 0 0 chr3 167791307 167791604 -50245554 - AluSx SINE Alu -15 297 1 223 319 78 42 chr3 167791691 167791857 -50245301 + L2 LINE L2 3098 3269 -3 2163 118 0 3 chr3 167792488 167792784 -50244374 + AluSg SINE Alu 1 295 -15 2347 85 0 3 chr3 167793522 167793817 -50243341 + AluSc SINE Alu 2 295 -14 4132 105 206 96 chr3 167793882 167795260 -50241898 + pTR5 LTR ERV1 743 2438 0 1976 124 30 27 chr3 167795571 167795869 -50241289 + AluSx SINE Alu 2 300 -12 868 231 70 25 chr3 167796210 167796409 -50240749 - MER58A DNA MER1_type -15 209 2 1930 156 0 0 chr3 167796618 167796893 -50240265 - AluSx SINE Alu -37 275 1 2321 107 7 0 chr3 167798048 167798356 -50238802 + AluSq SINE Alu 1 310 -3 274 282 84 0 chr3 167798364 167798506 -50238652 - L1ME4a LINE L1 -1 6120 5967 24 0 0 0 chr3 167798665 167798689 -50238469 + AT_rich Low_complexity Low_complexity 1 24 0 805 189 16 0 chr3 167799754 167799881 -50237277 - FLAM_C SINE Alu -4 129 1 1989 112 20 46 chr3 167799928 167800232 -50236926 + AluSx SINE Alu 1 296 -16 254 176 83 111 chr3 167801084 167801125 -50236033 - MLT1L LTR MaLR -6 609 568 2417 111 39 28 chr3 167801125 167801485 -50235673 + THE1B LTR MaLR 1 364 0 254 176 83 111 chr3 167801485 167801551 -50235607 - MLT1L LTR MaLR -47 568 505 1593 183 21 11 chr3 167802047 167802200 -50234958 - AluJb SINE Alu -25 287 128 2300 84 3 3 chr3 167802200 167802498 -50234660 - AluY SINE Alu -13 298 1 1593 183 21 11 chr3 167802498 167802628 -50234530 - AluJb SINE Alu -184 128 1 1780 185 0 3 chr3 167802841 167803138 -50234020 - AluJb SINE Alu -16 296 1 1352 80 0 0 chr3 167803167 167803343 -50233815 - AluSg/x SINE Alu 0 312 137 2011 135 37 0 chr3 167803343 167803640 -50233518 - AluSg SINE Alu -2 308 1 1459 147 0 36 chr3 167803640 167803891 -50233267 + Tigger2 DNA MER2_type 2473 2714 -4 2063 117 20 3 chr3 167804211 167804511 -50232647 - AluSx SINE Alu -7 305 1 2638 37 0 0 chr3 167804822 167805120 -50232038 - AluY SINE Alu -13 298 1 21 36 0 0 chr3 167805123 167805151 -50232007 + AT_rich Low_complexity Low_complexity 1 28 0 2396 60 0 0 chr3 167805208 167805543 -50231615 - AluY SINE Alu 0 335 1 2292 106 0 0 chr3 167805659 167805971 -50231187 + AluSx SINE Alu 1 312 0 842 172 93 0 chr3 167805987 167806138 -50231020 + AluJb SINE Alu 136 300 -12 4362 15 0 0 chr3 167806540 167807067 -50230091 - L1PA3 LINE L1 -412 5743 5217 3789 29 0 2 chr3 167807067 167807486 -50229672 + L1PA3 LINE L1 5737 6155 0 614 300 103 52 chr3 167807598 167807826 -50229332 - L2 LINE L2 -350 2964 2711 1842 107 92 0 chr3 167807826 167808130 -50229028 - AluSx SINE Alu 0 328 1 614 300 103 52 chr3 167808130 167808230 -50228928 - L2 LINE L2 -603 2711 2618 1734 85 0 0 chr3 167808623 167808861 -50228297 + AluSq SINE Alu 71 308 0 1193 115 26 21 chr3 167810145 167810319 -50226839 - AluSg/x SINE Alu -2 308 131 2336 105 3 0 chr3 167810319 167810625 -50226533 - AluSp SINE Alu -6 307 1 1193 115 26 21 chr3 167810625 167810642 -50226516 - AluSg/x SINE Alu -179 131 116 2176 114 7 3 chr3 167810726 167811033 -50226125 - AluSq SINE Alu -1 312 5 2485 77 0 6 chr3 167811296 167811607 -50225551 - AluY SINE Alu -2 309 1 1981 125 17 14 chr3 167811841 167812137 -50225021 + AluSx SINE Alu 13 309 -3 517 182 128 89 chr3 167812388 167812591 -50224567 + L1ME3 LINE L1 5944 6154 -8 2195 128 0 3 chr3 167812601 167812906 -50224252 + AluSx SINE Alu 1 304 -8 901 154 12 59 chr3 167813301 167813470 -50223688 - FRAM SINE Alu -5 161 1 2247 116 0 0 chr3 167813552 167813846 -50223312 - AluSx SINE Alu -18 294 1 1097 114 0 0 chr3 167813846 167813995 -50223163 + L1MA2 LINE L1 6156 6304 0 4943 167 29 52 chr3 167814031 167814252 -50222906 - L1M1 LINE L1 -600 5700 5475 2198 122 0 0 chr3 167814252 167814556 -50222602 - AluSx SINE Alu -8 304 1 4943 167 29 52 chr3 167814556 167815746 -50221412 - L1M1 LINE L1 -825 5475 4259 2246 107 0 13 chr3 167815746 167816055 -50221103 + AluSx SINE Alu 1 305 -7 2208 116 0 0 chr3 167816055 167816349 -50220809 + AluSg SINE Alu 1 294 -16 252 0 0 0 chr3 167816352 167816380 -50220778 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 4943 167 29 52 chr3 167816380 167816469 -50220689 - L1M1 LINE L1 -2042 4258 4240 2247 119 3 6 chr3 167816469 167816781 -50220377 - AluSq SINE Alu -2 311 1 4943 167 29 52 chr3 167816781 167816895 -50220263 - L1M1 LINE L1 -2060 4240 4125 * 8159 164 24 17 chr3 167816894 167817638 -50219520 - L1 LINE L1 -945 5201 4464 2025 122 7 7 chr3 167817638 167817932 -50219226 - AluSc SINE Alu -15 294 1 8159 164 24 17 chr3 167817932 167818865 -50218293 - L1 LINE L1 -1682 4464 3511 1370 85 0 0 chr3 167818872 167819048 -50218110 - AluY SINE Alu -1 310 135 1961 179 25 39 chr3 167819048 167819558 -50217600 - L1 LINE L1 -2675 3471 2968 2057 115 7 3 chr3 167819558 167819853 -50217305 - AluSq SINE Alu 0 313 18 1961 179 25 39 chr3 167819853 167819902 -50217256 - L1 LINE L1 -3178 2968 2920 539 129 0 0 chr3 167819903 167819996 -50217162 - L1MA4A LINE L1 -23 6280 6188 4381 140 18 12 chr3 167819999 167820801 -50216357 - L1MA4A LINE L1 -181 6122 5317 6378 85 12 6 chr3 167820828 167821744 -50215414 - L1PB1 LINE L1 -1 6150 5231 1535 193 10 17 chr3 167822541 167822837 -50214321 - AluJo SINE Alu -18 294 1 2474 60 0 7 chr3 167823919 167824220 -50212938 - AluY SINE Alu -12 299 1 2520 77 0 0 chr3 167824558 167824868 -50212290 - AluY SINE Alu -1 310 1 1634 160 16 62 chr3 167824870 167825030 -50212128 - AluJo SINE Alu -19 293 152 1540 124 0 18 chr3 167825030 167825255 -50211903 - AluJb SINE Alu -11 301 81 1634 160 16 62 chr3 167825255 167825401 -50211757 - AluJo SINE Alu -160 152 1 2065 148 0 0 chr3 167825921 167826212 -50210946 - AluSq SINE Alu -22 291 1 2330 107 7 0 chr3 167827368 167827676 -50209482 + AluSq SINE Alu 1 310 -3 382 287 70 7 chr3 167827684 167827827 -50209331 - L1ME4a LINE L1 -3 6118 5967 24 0 0 0 chr3 167827986 167828010 -50209148 + AT_rich Low_complexity Low_complexity 1 24 0 755 189 16 0 chr3 167829074 167829201 -50207957 - FLAM_C SINE Alu -4 129 1 1993 135 0 26 chr3 167829248 167829552 -50207606 + AluSx SINE Alu 1 296 -16 2241 111 39 28 chr3 167830445 167830805 -50206353 + THE1B LTR MaLR 1 364 0 568 167 18 26 chr3 167831367 167831481 -50205677 - AluJb SINE Alu -25 287 175 225 0 0 0 chr3 167832372 167832397 -50204761 + (T)n Simple_repeat Simple_repeat 1 25 0 2096 53 0 30 chr3 167833326 167833589 -50203569 + AluY SINE Alu 37 291 -20 21 0 0 0 chr3 167833664 167833685 -50203473 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 167833937 167833958 -50203200 + AT_rich Low_complexity Low_complexity 1 21 0 3146 224 58 65 chr3 167834095 167835339 -50201819 + L1MC4 LINE L1 6808 8042 0 24 53 0 0 chr3 167835531 167835569 -50201589 + AT_rich Low_complexity Low_complexity 1 38 0 957 135 0 43 chr3 167835570 167835733 -50201425 - AluSg/x SINE Alu -25 285 130 596 292 34 6 chr3 167835912 167836090 -50201068 + MIR3 SINE MIR 16 198 -10 261 260 0 14 chr3 167836309 167836382 -50200776 - MIR SINE MIR -94 168 97 2121 121 7 0 chr3 167836388 167836678 -50200480 - AluSx SINE Alu -20 292 1 236 297 14 0 chr3 167837271 167837345 -50199813 - HAL1 LINE L1 -605 1902 1828 401 282 20 7 chr3 167837510 167837659 -50199499 - HAL1 LINE L1 -919 1588 1438 664 217 132 28 chr3 167838083 167838185 -50198973 - MIR SINE MIR 0 262 172 1186 216 4 12 chr3 167838185 167838426 -50198732 + MER8 DNA MER2_type 1 239 0 664 217 132 28 chr3 167838426 167838545 -50198613 - MIR SINE MIR -90 172 19 512 314 0 29 chr3 167839121 167839293 -50197865 - MIR SINE MIR -24 238 72 234 143 0 0 chr3 167839420 167839469 -50197689 + (CA)n Simple_repeat Simple_repeat 2 50 0 2521 47 3 0 chr3 167839584 167839883 -50197275 - AluY SINE Alu -10 301 2 490 261 98 43 chr3 167840225 167840350 -50196808 + MLT1H LTR MaLR 57 174 -375 657 209 0 23 chr3 167840350 167840479 -50196679 + FLAM_A SINE Alu 1 126 -7 490 261 98 43 chr3 167840479 167840629 -50196529 + MLT1H LTR MaLR 174 347 -202 184 239 7 169 chr3 167841676 167841818 -50195340 + L2 LINE L2 2626 2744 -570 2253 94 0 13 chr3 167841826 167842124 -50195034 - AluSc SINE Alu -15 294 1 339 362 25 12 chr3 167842172 167842335 -50194823 + L2 LINE L2 2863 3027 -286 260 161 35 23 chr3 167842451 167842538 -50194620 + CT-rich Low_complexity Low_complexity 3 90 0 414 198 28 38 chr3 167843362 167843468 -50193690 + MIR SINE MIR 122 226 -36 2078 128 3 3 chr3 167844416 167844713 -50192445 + AluSq SINE Alu 1 297 -16 1073 161 0 0 chr3 167844777 167844939 -50192219 + FRAM SINE Alu 1 159 -17 1946 138 32 0 chr3 167844941 167845223 -50191935 + AluSx SINE Alu 1 291 -21 191 114 23 0 chr3 167845230 167845274 -50191884 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 2052 151 0 3 chr3 167845479 167845783 -50191375 - AluSx SINE Alu -9 303 1 295 307 97 0 chr3 167845927 167846041 -50191117 + MIR SINE MIR 48 172 -90 2009 150 0 0 chr3 167846187 167846480 -50190678 - AluSx SINE Alu -19 293 1 39 60 0 0 chr3 167846915 167846982 -50190176 + AT_rich Low_complexity Low_complexity 1 67 0 2393 68 0 19 chr3 167847223 167847530 -50189628 + AluY SINE Alu 1 301 -10 1122 137 70 74 chr3 167847929 167848213 -50188945 - MSTB2 LTR MaLR 0 457 175 2938 58 92 7 chr3 167848229 167848642 -50188516 - LTR7 LTR ERV1 -2 448 1 2180 91 56 16 chr3 167848642 167849017 -50188141 - HERVH LTR ERV1 0 7713 7324 1754 138 15 61 chr3 167849225 167849410 -50187748 - AluJb SINE Alu 0 312 147 2118 127 0 22 chr3 167849410 167849724 -50187434 - AluSx SINE Alu -5 307 1 1754 138 15 61 chr3 167849724 167849865 -50187293 - AluJb SINE Alu -165 147 1 2210 89 10 3 chr3 167850441 167850733 -50186425 + AluSx SINE Alu 1 294 -18 23 33 0 0 chr3 167852034 167852064 -50185094 + AT_rich Low_complexity Low_complexity 1 30 0 2090 129 23 63 chr3 167852570 167852897 -50184261 + MLT1B LTR MaLR 5 315 -75 1453 129 118 37 chr3 167852897 167853168 -50183990 - AluJb SINE Alu -19 293 1 2090 129 23 63 chr3 167853168 167853235 -50183923 + MLT1B LTR MaLR 315 383 -7 778 267 29 30 chr3 167853496 167853738 -50183420 - MIR SINE MIR -4 258 15 2244 110 3 0 chr3 167853738 167854046 -50183112 - AluSg SINE Alu -1 309 1 680 205 0 8 chr3 167854293 167854420 -50182738 + FLAM_C SINE Alu 2 127 -16 24 0 0 0 chr3 167854420 167854444 -50182714 + AT_rich Low_complexity Low_complexity 1 24 0 2211 96 0 0 chr3 167854444 167854768 -50182390 - AluY SINE Alu 0 324 1 1927 134 0 4 chr3 167854845 167855114 -50182044 - AluSx SINE Alu -44 268 1 2361 97 0 7 chr3 167855125 167855435 -50181723 - AluSg SINE Alu -2 308 1 2263 166 20 0 chr3 167855594 167855992 -50181166 + L1MC1 LINE L1 5921 6326 -7 1371 295 163 10 chr3 167856042 167857134 -50180024 - L2 LINE L2 0 3313 2058 633 186 77 70 chr3 167857538 167857694 -50179464 + MER5B DNA MER1_type 21 177 -1 370 321 14 27 chr3 167858112 167858333 -50178825 - MLT1K LTR MaLR 0 588 371 1764 153 10 0 chr3 167858656 167858950 -50178208 - AluSx SINE Alu -15 297 1 35 63 0 0 chr3 167858950 167859013 -50178145 + AT_rich Low_complexity Low_complexity 1 63 0 2232 86 12 68 chr3 167859859 167860197 -50176961 - 7SLRNA srpRNA srpRNA -1 319 1 1539 178 69 14 chr3 167860575 167860851 -50176307 + AluJb SINE Alu 1 291 -21 353 241 362 0 chr3 167861063 167861204 -50175954 - MIR SINE MIR 0 262 71 2239 101 0 10 chr3 167861456 167861762 -50175396 + AluSg SINE Alu 2 304 -6 300 220 132 16 chr3 167862111 167862293 -50174865 - Charlie1 DNA MER1_type -2 2759 2557 2343 115 0 0 chr3 167862328 167862640 -50174518 - AluSx SINE Alu 0 312 1 896 162 0 0 chr3 167862653 167862795 -50174363 - FRAM SINE Alu -26 150 9 3048 161 45 5 chr3 167862798 167863458 -50173700 - Charlie1 DNA MER1_type -195 2566 1880 228 198 41 132 chr3 167863797 167863918 -50173240 + MER20B DNA MER1_type 24 133 -650 990 168 25 0 chr3 167864841 167865002 -50172156 - AluJo/FRAM SINE Alu -7 305 141 240 220 0 0 chr3 167865002 167865052 -50172106 - AluJ/monomer SINE Alu -253 50 1 526 293 51 42 chr3 167865359 167865476 -50171682 + MIR SINE MIR 31 152 -110 2344 90 3 0 chr3 167865476 167865777 -50171381 + AluSp SINE Alu 1 302 -11 526 293 51 42 chr3 167865777 167865874 -50171284 + MIR SINE MIR 152 247 -15 1215 200 83 38 chr3 167866124 167866414 -50170744 + AluJb SINE Alu 1 303 -9 1918 166 0 0 chr3 167866613 167866909 -50170249 - AluJb SINE Alu -14 298 3 190 74 0 0 chr3 167866920 167866947 -50170211 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2157 102 0 7 chr3 167866947 167867232 -50169926 - AluSx SINE Alu -29 283 1 2349 80 10 0 chr3 167867487 167867789 -50169369 - AluSp SINE Alu -8 305 1 1261 83 0 0 chr3 167869898 167870055 -50167103 - AluSq SINE Alu -156 157 1 914 303 108 51 chr3 167870332 167870911 -50166247 - L2 LINE L2 -15 3298 2676 2202 74 10 27 chr3 167870911 167871210 -50165948 + AluSq SINE Alu 1 294 -19 914 303 108 51 chr3 167871210 167871387 -50165771 - L2 LINE L2 -637 2676 2511 1160 112 16 48 chr3 167871977 167872143 -50165015 - MLT1B LTR MaLR 0 390 220 3629 155 25 65 chr3 167872143 167872861 -50164297 - LTR8 LTR ERV1 -2 689 1 1160 112 16 48 chr3 167872861 167873035 -50164123 - MLT1B LTR MaLR -170 220 12 2013 238 104 87 chr3 167873135 167873352 -50163806 + MER21B LTR ERV1 12 224 -639 2130 123 0 13 chr3 167873352 167873668 -50163490 + AluSx SINE Alu 1 312 0 2013 238 104 87 chr3 167873668 167874232 -50162926 + MER21B LTR ERV1 224 806 -57 382 316 89 6 chr3 167874274 167874442 -50162716 - MIR SINE MIR -69 193 12 281 280 43 21 chr3 167874457 167874550 -50162608 + MIR SINE MIR 162 256 -6 1511 180 52 0 chr3 167874627 167874877 -50162281 - AluJo SINE Alu -41 271 9 947 67 0 0 chr3 167876058 167876177 -50160981 + AluY SINE Alu 180 298 -13 2252 101 0 13 chr3 167876420 167876737 -50160421 + AluSq SINE Alu 1 313 0 219 250 111 46 chr3 167877369 167877477 -50159681 + L3b LINE CR1 1323 1437 -146 229 374 37 0 chr3 167878633 167878740 -50158418 - MIR SINE MIR -60 148 38 1957 125 59 0 chr3 167878775 167879064 -50158094 + AluSq SINE Alu 1 306 -7 30 69 0 0 chr3 167879103 167879161 -50157997 + AT_rich Low_complexity Low_complexity 1 58 0 2112 132 10 0 chr3 167879296 167879599 -50157559 - AluSx SINE Alu -4 308 3 2081 134 0 16 chr3 167880121 167880435 -50156723 - AluSx SINE Alu -1 311 3 1844 65 0 13 chr3 167880462 167880692 -50156466 + L1PA6 LINE L1 5921 6147 -7 1568 95 0 5 chr3 167881778 167881978 -50155180 + AluSx SINE Alu 1 199 -113 239 222 32 16 chr3 167882770 167882833 -50154325 - MLT1K LTR MaLR -440 148 85 607 278 122 13 chr3 167883080 167883310 -50153848 + MIR SINE MIR 3 257 -5 191 326 0 0 chr3 167883372 167883415 -50153743 - MIR SINE MIR -167 95 53 391 18 36 0 chr3 167883513 167883569 -50153589 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 213 182 0 0 chr3 167883759 167883814 -50153344 + (TGAA)n Simple_repeat Simple_repeat 2 56 0 2167 100 0 0 chr3 167883829 167884110 -50153048 - AluSq SINE Alu -32 281 1 1766 162 3 35 chr3 167884242 167884577 -50152581 + AluJb SINE Alu 1 326 0 4450 110 2 0 chr3 167885473 167886064 -50151094 - L1PA13 LINE L1 -7 6156 5565 882 150 152 60 chr3 167886114 167886553 -50150605 - LTR29 LTR ERV1 0 622 1 1767 126 17 53 chr3 167886689 167886991 -50150167 - AluJb SINE Alu -11 301 11 827 171 0 0 chr3 167887149 167887266 -50149892 + AluJb SINE Alu 2 118 -194 22 0 0 0 chr3 167887266 167887288 -50149870 + AT_rich Low_complexity Low_complexity 1 22 0 321 100 0 0 chr3 167887475 167887525 -50149633 + (TG)n Simple_repeat Simple_repeat 1 50 0 183 42 0 0 chr3 167887632 167887656 -50149502 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1998 122 4 0 chr3 167887664 167887934 -50149224 - AluSx SINE Alu -41 271 1 774 187 0 29 chr3 167887957 167888096 -50149062 - AluJo SINE Alu -176 136 2 2423 79 0 0 chr3 167889088 167889392 -50147766 + AluY SINE Alu 1 304 -7 2465 89 0 6 chr3 167889401 167889716 -50147442 + AluSp SINE Alu 1 313 0 2397 53 0 0 chr3 167890646 167890952 -50146206 + AluY SINE Alu 1 306 0 2043 136 7 13 chr3 167891671 167891844 -50145314 - AluSx SINE Alu -4 308 136 1938 124 69 0 chr3 167891844 167892015 -50145143 - AluSq SINE Alu -2 311 110 188 35 35 0 chr3 167892015 167892044 -50145114 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 1938 124 69 0 chr3 167892044 167892163 -50144995 - AluSq SINE Alu -203 110 1 2043 136 7 13 chr3 167892163 167892299 -50144859 - AluSx SINE Alu -176 136 1 1987 133 4 0 chr3 167892474 167892779 -50144379 - AluSx SINE Alu 0 311 6 497 244 30 15 chr3 167892792 167892923 -50144235 - MER5B DNA MER1_type -45 133 1 431 290 121 26 chr3 167892923 167893190 -50143968 + L2 LINE L2 2177 2469 -845 973 179 12 0 chr3 167893423 167893591 -50143567 + AluSg/x SINE Alu 131 300 -10 366 291 47 38 chr3 167893692 167893745 -50143413 - L2 LINE L2 -756 2558 2507 2092 107 9 35 chr3 167893745 167894062 -50143096 - AluSx SINE Alu -3 309 1 366 291 47 38 chr3 167894062 167894221 -50142937 - L2 LINE L2 -807 2507 2344 2313 77 10 3 chr3 167894351 167894648 -50142510 - AluY SINE Alu -12 299 1 415 285 8 31 chr3 167894830 167894960 -50142198 + MIR SINE MIR 28 154 -108 2216 103 3 3 chr3 167894968 167895268 -50141890 - AluSc SINE Alu -9 300 1 714 205 25 0 chr3 167895286 167895408 -50141750 - FLAM_C SINE Alu -17 126 2 1450 129 27 30 chr3 167895432 167895695 -50141463 + MER21A LTR ERV1 5 266 -665 2889 172 71 8 chr3 167895698 167896220 -50140938 + MER21A LTR ERV1 377 931 0 32 43 0 0 chr3 167896714 167896760 -50140398 + AT_rich Low_complexity Low_complexity 1 46 0 630 203 8 17 chr3 167896762 167896880 -50140278 - FLAM_A SINE Alu -15 118 2 2348 101 3 0 chr3 167897025 167897333 -50139825 + AluSp SINE Alu 1 309 -4 2022 110 3 3 chr3 167897336 167897662 -50139496 + AluSx SINE Alu 1 326 0 501 209 27 61 chr3 167897701 167897849 -50139309 + MIR SINE MIR 64 206 -56 2003 110 0 76 chr3 167899234 167899466 -50137692 - AluSx SINE Alu -9 303 102 2186 100 0 3 chr3 167899466 167899765 -50137393 - AluY SINE Alu -13 298 1 2003 110 0 76 chr3 167899765 167899860 -50137298 - AluSx SINE Alu -210 102 1 1762 150 14 7 chr3 167901866 167902146 -50135012 + AluJo SINE Alu 21 302 -10 1020 66 0 0 chr3 167902457 167902578 -50134580 - AluSg/x SINE Alu -22 288 168 1049 247 104 51 chr3 167902921 167903043 -50134115 + L1ME3A LINE L1 5484 5598 -572 1956 145 6 22 chr3 167903043 167903360 -50133798 + AluJb SINE Alu 1 312 0 1049 247 104 51 chr3 167903360 167903877 -50133281 + L1ME3A LINE L1 5598 6159 -11 1909 145 14 7 chr3 167903963 167904260 -50132898 + AluJo SINE Alu 1 299 -13 255 130 0 0 chr3 167904283 167904329 -50132829 - LTR66 LTR ERVL -171 439 394 308 250 115 45 chr3 167904359 167904515 -50132643 + L1ME4a LINE L1 5938 6104 -17 2165 127 0 10 chr3 167904524 167904838 -50132320 - AluSq SINE Alu -2 311 1 191 284 28 64 chr3 167905127 167905236 -50131922 + MIR SINE MIR 112 216 -46 436 250 0 0 chr3 167905385 167905465 -50131693 + FLAM_A SINE Alu 4 83 -59 185 125 0 62 chr3 167905492 167905540 -50131618 + (GGGAGA)n Simple_repeat Simple_repeat 4 48 0 927 115 39 0 chr3 167905601 167905731 -50131427 - AluJb SINE Alu -177 135 1 2092 96 14 7 chr3 167905817 167906124 -50131034 - AluSx SINE Alu 0 313 5 2485 77 0 6 chr3 167906387 167906698 -50130460 - AluY SINE Alu -2 309 1 1981 125 17 14 chr3 167906932 167907228 -50129930 + AluSx SINE Alu 13 309 -3 517 182 128 89 chr3 167907479 167907682 -50129476 + L1ME3 LINE L1 5944 6154 -8 2182 120 0 0 chr3 167907692 167907983 -50129175 + AluSq SINE Alu 1 291 -22 934 145 53 0 chr3 167908504 167908656 -50128502 + AluSg/x SINE Alu 135 294 -16 308 336 95 7 chr3 167908660 167908797 -50128361 - L1MC/D LINE L1 -2196 5612 5464 1335 102 10 35 chr3 167908829 167909026 -50128132 - AluSc SINE Alu -15 294 103 869 89 0 0 chr3 167909145 167909257 -50127901 - AluSp SINE Alu -201 112 1 22 56 0 0 chr3 167909532 167909568 -50127590 + AT_rich Low_complexity Low_complexity 1 36 0 491 298 0 8 chr3 167909987 167910111 -50127047 + FLAM_A SINE Alu 1 123 -10 22 0 0 0 chr3 167910586 167910608 -50126550 + AT_rich Low_complexity Low_complexity 1 22 0 1517 165 8 4 chr3 167911403 167911645 -50125513 + AluSx SINE Alu 1 243 -69 1726 169 4 0 chr3 167911677 167911949 -50125209 + AluSx SINE Alu 1 273 -39 407 194 11 0 chr3 167911968 167912061 -50125097 + GA-rich Low_complexity Low_complexity 3 96 0 468 62 0 0 chr3 167912177 167912241 -50124917 + (TA)n Simple_repeat Simple_repeat 1 64 0 199 194 0 0 chr3 167912244 167912280 -50124878 + L2 LINE L2 3226 3261 -11 2007 154 3 0 chr3 167912345 167912656 -50124502 + AluJb SINE Alu 1 312 0 2393 57 0 0 chr3 167912877 167913190 -50123968 + AluY SINE Alu 1 313 0 244 297 315 0 chr3 167913686 167913797 -50123361 + MER5A DNA MER1_type 36 181 -8 2124 126 13 0 chr3 167913845 167914166 -50122992 - AluSq SINE Alu 0 325 1 1866 159 10 29 chr3 167914198 167914506 -50122652 - AluJo SINE Alu -2 310 9 23 0 0 0 chr3 167916106 167916129 -50121029 + AT_rich Low_complexity Low_complexity 1 23 0 832 273 16 5 chr3 167916509 167916696 -50120462 + MER5A DNA MER1_type 1 189 0 333 0 0 0 chr3 167916808 167916845 -50120313 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 897 168 132 0 chr3 167917023 167917190 -50119968 - MER5A DNA MER1_type 0 189 1 1845 178 0 6 chr3 167917233 167917547 -50119611 + AluSx SINE Alu 1 312 0 212 160 0 60 chr3 167917551 167917601 -50119557 + GA-rich Low_complexity Low_complexity 3 49 0 2314 105 0 0 chr3 167917935 167918240 -50118918 - AluSg SINE Alu -5 305 1 390 264 116 8 chr3 167918384 167918513 -50118645 - L2 LINE L2 0 3313 3171 1387 138 0 0 chr3 167918527 167918730 -50118428 + AluSx SINE Alu 1 203 -109 736 114 0 35 chr3 167918730 167918797 -50118361 + AluSg/x SINE Alu 67 130 -180 2271 119 0 0 chr3 167918797 167919100 -50118058 + AluSx SINE Alu 1 303 -9 736 114 0 35 chr3 167919100 167919146 -50118012 + AluSg/x SINE Alu 130 176 -134 4139 22 0 0 chr3 167919250 167919757 -50117401 - L1PA3 LINE L1 -432 5723 5217 3789 29 0 2 chr3 167919757 167920176 -50116982 + L1PA3 LINE L1 5737 6155 0 614 300 103 52 chr3 167920288 167920516 -50116642 - L2 LINE L2 -350 2964 2711 1842 107 92 0 chr3 167920516 167920820 -50116338 - AluSx SINE Alu 0 328 1 614 300 103 52 chr3 167920820 167920920 -50116238 - L2 LINE L2 -603 2711 2618 1734 85 0 0 chr3 167921310 167921548 -50115610 + AluSq SINE Alu 71 308 0 1193 115 26 21 chr3 167922832 167923006 -50114152 - AluSg/x SINE Alu -2 308 131 2336 105 3 0 chr3 167923006 167923312 -50113846 - AluSp SINE Alu -6 307 1 1193 115 26 21 chr3 167923312 167923329 -50113829 - AluSg/x SINE Alu -179 131 116 2176 114 7 3 chr3 167923413 167923720 -50113438 - AluSq SINE Alu -1 312 5 2553 55 3 7 chr3 167923983 167924292 -50112866 - AluY SINE Alu -2 309 2 607 257 137 40 chr3 167924610 167924759 -50112399 + MLT1H LTR MaLR 19 152 -397 705 209 0 23 chr3 167924759 167924888 -50112270 + FLAM_A SINE Alu 1 126 -7 607 257 137 40 chr3 167924888 167925038 -50112120 + MLT1H LTR MaLR 152 347 -202 248 286 36 0 chr3 167925108 167925192 -50111966 + MLT1H LTR MaLR 460 546 -3 2251 94 0 13 chr3 167926235 167926533 -50110625 - AluSc SINE Alu -15 294 1 341 356 25 12 chr3 167926581 167926744 -50110414 + L2 LINE L2 2863 3027 -286 260 161 35 23 chr3 167926860 167926947 -50110211 + CT-rich Low_complexity Low_complexity 3 90 0 406 198 28 38 chr3 167927771 167927877 -50109281 + MIR SINE MIR 122 226 -36 2070 128 3 3 chr3 167928826 167929123 -50108035 + AluSq SINE Alu 1 297 -16 1061 161 0 0 chr3 167929187 167929349 -50107809 + FRAM SINE Alu 1 159 -17 1941 138 32 0 chr3 167929351 167929633 -50107525 + AluSx SINE Alu 1 291 -21 191 114 23 0 chr3 167929640 167929684 -50107474 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 2093 141 0 3 chr3 167929889 167930193 -50106965 - AluSx SINE Alu -9 303 1 285 307 97 0 chr3 167930337 167930451 -50106707 + MIR SINE MIR 48 172 -90 2259 64 53 0 chr3 167930798 167931079 -50106079 + AluY SINE Alu 1 296 -15 215 262 0 48 chr3 167932065 167932149 -50105009 + C-rich Low_complexity Low_complexity 1 80 0 240 200 45 18 chr3 167932767 167932877 -50104281 + (TATAA)n Simple_repeat Simple_repeat 2 114 0 701 184 0 0 chr3 167932888 167932997 -50104161 - FLAM_C SINE Alu -26 117 9 2454 53 3 3 chr3 167933265 167933567 -50103591 - AluY SINE Alu -9 302 1 27 0 0 0 chr3 167933677 167933704 -50103454 + AT_rich Low_complexity Low_complexity 1 27 0 997 149 18 36 chr3 167933878 167934046 -50103112 + Tigger2a DNA MER2_type 2 166 -268 1099 147 21 0 chr3 167934178 167934368 -50102790 - HERVH LTR ERV1 -1920 5793 5600 8335 111 4 8 chr3 167934369 167936097 -50101061 - HERVH LTR ERV1 -1818 5273 3492 979 127 7 0 chr3 167936087 167936237 -50100921 - HERVH LTR ERV1 -4423 3290 3140 * 19957 93 7 40 chr3 167936231 167939322 -50097836 - HERVH LTR ERV1 -4726 2987 1 3101 60 92 7 chr3 167939324 167939737 -50097421 - LTR7 LTR ERV1 -2 448 1 570 162 0 29 chr3 167939747 167939852 -50097306 - MSTC LTR MaLR -326 102 1 1639 161 44 0 chr3 167940607 167940910 -50096248 - AluJo SINE Alu 0 315 1 836 271 6 11 chr3 167941224 167941405 -50095753 - MER5A DNA MER1_type -6 183 4 4331 152 19 32 chr3 167941559 167941930 -50095228 + Tigger1 DNA MER2_type 34 409 -2009 2449 91 3 0 chr3 167941930 167942239 -50094919 + AluSp SINE Alu 1 310 -3 4331 152 19 32 chr3 167942239 167942250 -50094908 + Tigger1 DNA MER2_type 409 419 -1999 2238 121 7 0 chr3 167942250 167942555 -50094603 + AluSq SINE Alu 1 307 -6 4331 152 19 32 chr3 167942555 167942910 -50094248 + Tigger1 DNA MER2_type 419 762 -1656 43552 35 21 1 chr3 167942968 167948996 -50088162 - L1PA2 LINE L1 0 6155 6 10673 129 31 4 chr3 167948996 167950620 -50086538 + Tigger1 DNA MER2_type 750 2418 0 1196 68 0 0 chr3 167950792 167950940 -50086218 + AluY SINE Alu 152 299 -12 1916 162 7 0 chr3 167951119 167951427 -50085731 - AluSx SINE Alu -2 310 1 21 0 0 0 chr3 167951525 167951546 -50085612 + AT_rich Low_complexity Low_complexity 1 21 0 224 333 103 34 chr3 167951928 167952045 -50085113 + L2 LINE L2 3133 3257 -15 4706 162 44 20 chr3 167952497 167953461 -50083697 + L1PB4 LINE L1 4828 5827 -329 567 55 0 33 chr3 167953461 167953552 -50083606 + (TA)n Simple_repeat Simple_repeat 2 89 0 4706 162 44 20 chr3 167953552 167953877 -50083281 + L1PB4 LINE L1 5827 6143 -13 297 0 0 0 chr3 167953877 167953910 -50083248 + (CA)n Simple_repeat Simple_repeat 2 34 0 282 315 48 42 chr3 167954607 167954772 -50082386 + L2 LINE L2 3140 3305 -8 38 0 0 0 chr3 167955080 167955118 -50082040 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr3 167955664 167955685 -50081473 + AT_rich Low_complexity Low_complexity 1 21 0 3561 85 4 11 chr3 167955911 167956291 -50080867 - L1PA10 LINE L1 -10 6158 5780 2357 92 0 0 chr3 167956291 167956595 -50080563 - AluY SINE Alu -7 304 1 3561 85 4 11 chr3 167956595 167956672 -50080486 - L1PA10 LINE L1 -388 5780 5704 313 273 149 16 chr3 167957283 167957404 -50079754 + MER5A DNA MER1_type 1 137 -52 231 125 0 0 chr3 167958416 167958456 -50078702 + (TTATA)n Simple_repeat Simple_repeat 2 41 0 249 343 105 40 chr3 167958917 167958996 -50078162 + L2 LINE L2 2199 2271 -1043 2942 143 12 0 chr3 167958996 167959417 -50077741 - MSTB LTR MaLR 0 426 1 249 343 105 40 chr3 167959417 167959850 -50077308 + L2 LINE L2 2271 2823 -491 7443 121 44 13 chr3 167960037 167961224 -50075934 - Tigger3b DNA MER2_type -1 1230 7 748 297 15 55 chr3 167961236 167961350 -50075808 + LTR16C LTR ERVL 218 335 -156 2215 100 20 3 chr3 167961350 167961649 -50075509 - AluSx SINE Alu -8 304 1 748 297 15 55 chr3 167961649 167961807 -50075351 + LTR16C LTR ERVL 335 479 -12 21 0 0 0 chr3 167961868 167961889 -50075269 + AT_rich Low_complexity Low_complexity 1 21 0 204 204 37 19 chr3 167962091 167962145 -50075013 + L2 LINE L2 3167 3221 -92 180 111 0 0 chr3 167962557 167962584 -50074574 + (TTA)n Simple_repeat Simple_repeat 1 27 0 271 299 104 35 chr3 167963303 167963447 -50073711 + L2 LINE L2 3159 3312 -1 623 62 0 0 chr3 167963884 167963965 -50073193 - Alu SINE Alu -4 307 227 1132 180 92 48 chr3 167964004 167964238 -50072920 - MER58B DNA MER1_type -2088 332 83 2010 156 0 7 chr3 167964238 167964539 -50072619 + AluSx SINE Alu 1 299 -13 1132 180 92 48 chr3 167964539 167964576 -50072582 - MER58B DNA MER1_type -2337 83 49 229 370 116 0 chr3 167965078 167965224 -50071934 + L2 LINE L2 2897 3059 -213 204 388 16 41 chr3 167965299 167965420 -50071738 + L2 LINE L2 3125 3242 -30 2252 98 19 3 chr3 167965978 167966285 -50070873 - AluSx SINE Alu 0 312 1 208 288 0 25 chr3 167966857 167966937 -50070221 + GA-rich Low_complexity Low_complexity 1 78 0 934 115 39 0 chr3 167966997 167967127 -50070031 - AluJb SINE Alu -177 135 1 202 74 0 0 chr3 167967213 167967240 -50069918 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2045 109 14 3 chr3 167967240 167967523 -50069635 - AluSx SINE Alu -1 312 1 22 0 0 0 chr3 167967527 167967549 -50069609 + AT_rich Low_complexity Low_complexity 1 22 0 1557 111 154 39 chr3 167967761 167968041 -50069117 + AluSx SINE Alu 1 312 0 468 266 146 6 chr3 167968488 167968646 -50068512 + MIR SINE MIR 78 257 -5 617 141 0 31 chr3 167969533 167969661 -50067497 + (TCCC)n Simple_repeat Simple_repeat 4 127 0 195 42 0 0 chr3 167970129 167970153 -50067005 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2270 95 3 0 chr3 167970155 167970440 -50066718 - AluSp SINE Alu -26 287 2 1920 131 3 20 chr3 167971229 167971535 -50065623 + AluSx SINE Alu 11 311 -1 2128 138 3 6 chr3 167971786 167972098 -50065060 + AluSx SINE Alu 1 311 -1 2280 70 0 11 chr3 167973876 167974181 -50062977 - AluY SINE Alu 0 302 1 2542 65 0 0 chr3 167974444 167974750 -50062408 - AluY SINE Alu -5 306 1 616 318 28 14 chr3 167975007 167975221 -50061937 - MIR SINE MIR -38 224 8 209 402 27 27 chr3 167975846 167975958 -50061200 + MIR SINE MIR 19 130 -78 2048 107 37 0 chr3 167976482 167976781 -50060377 + AluSg SINE Alu 1 309 0 5352 101 2 90 chr3 167977090 167977830 -50059328 + L1PA8A LINE L1 4772 5388 -743 2007 129 4 4 chr3 167977830 167978110 -50059048 + AluSx SINE Alu 21 300 -12 5352 101 2 90 chr3 167978110 167978778 -50058380 + L1PA8A LINE L1 5388 6113 -18 1436 193 95 15 chr3 167978842 167979179 -50057979 - MLT1C LTR MaLR 0 467 104 297 292 106 0 chr3 167979898 167980011 -50057147 + L2 LINE L2 3189 3313 0 1293 247 89 71 chr3 167980077 167980596 -50056562 + MLT1F1 LTR MaLR 12 564 -3 710 114 50 154 chr3 167980738 167980900 -50056258 + MER33 DNA MER1_type 53 230 -2355 2342 87 0 3 chr3 167980900 167981198 -50055960 + AluSg SINE Alu 1 297 -13 710 114 50 154 chr3 167981198 167981239 -50055919 + MER33 DNA MER1_type 230 274 -2311 1961 125 24 3 chr3 167981239 167981528 -50055630 + AluSq SINE Alu 1 295 -18 710 114 50 154 chr3 167981528 167981622 -50055536 + MER33 DNA MER1_type 274 320 -4 560 294 168 16 chr3 167981639 167982126 -50055032 - HAL1 LINE L1 -57 2450 1890 962 250 84 27 chr3 167982310 167982750 -50054408 - HAL1 LINE L1 -662 1845 1381 371 301 139 30 chr3 167982753 167982847 -50054311 - L1MEd LINE L1 -5306 813 731 186 103 0 0 chr3 167982847 167982876 -50054282 + (TG)n Simple_repeat Simple_repeat 2 30 0 371 301 139 30 chr3 167982876 167982947 -50054211 - L1MEd LINE L1 -5388 731 630 2256 166 23 17 chr3 167983406 167983923 -50053235 - LTR27 LTR ERV1 -11 493 2 443 292 92 0 chr3 167985691 167985811 -50051347 - L2 LINE L2 -6 3266 3136 2405 77 0 3 chr3 167985934 167986246 -50050912 - AluY SINE Alu 0 311 1 907 218 36 82 chr3 167986290 167986731 -50050427 + LTR37B LTR ERV1 47 467 -1 304 363 118 9 chr3 167986742 167986918 -50050240 - L2 LINE L2 -261 3052 2848 2568 48 0 10 chr3 167986918 167987232 -50049926 + AluY SINE Alu 1 311 0 304 363 118 9 chr3 167987232 167987267 -50049891 - L2 LINE L2 -465 2848 2818 234 174 33 16 chr3 167987326 167987447 -50049711 + GA-rich Low_complexity Low_complexity 2 124 0 * 282 206 0 0 chr3 167987445 167987508 -50049650 + G-rich Low_complexity Low_complexity 4 66 0 * 717 130 24 12 chr3 167987502 167987671 -50049487 + GA-rich Low_complexity Low_complexity 2 172 0 21 57 0 0 chr3 167988183 167988218 -50048940 + AT_rich Low_complexity Low_complexity 1 35 0 576 200 0 0 chr3 167988218 167988318 -50048840 - AluSg/x SINE Alu -25 287 188 676 59 0 78 chr3 167988410 167988512 -50048646 - AluSg/x SINE Alu -8 302 209 383 289 9 0 chr3 167988633 167988747 -50048411 - LTR16A LTR ERVL 0 450 336 * 425 279 47 12 chr3 167988746 167988918 -50048240 - LTR16A LTR ERVL -239 211 34 509 369 58 24 chr3 167990444 167990823 -50046335 + L2 LINE L2 2921 3312 -1 22 56 0 0 chr3 167993420 167993456 -50043702 + AT_rich Low_complexity Low_complexity 1 36 0 25 0 0 0 chr3 167993475 167993500 -50043658 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr3 167993559 167993580 -50043578 + AT_rich Low_complexity Low_complexity 1 21 0 408 40 0 0 chr3 167993794 167993844 -50043314 + (TA)n Simple_repeat Simple_repeat 1 50 0 1794 65 5 0 chr3 167994126 167994343 -50042815 + AluY SINE Alu 1 218 -93 298 95 0 0 chr3 167994343 167994385 -50042773 + AluY SINE Alu 252 293 -8 458 134 0 12 chr3 167994387 167994469 -50042689 + (TA)n Simple_repeat Simple_repeat 2 82 0 234 0 0 0 chr3 167994801 167994827 -50042331 + (T)n Simple_repeat Simple_repeat 1 26 0 348 287 137 99 chr3 167995214 167995323 -50041835 - L2 LINE L2 -498 2816 2713 2151 118 27 0 chr3 167995323 167995619 -50041539 - AluSg SINE Alu -6 304 1 348 287 137 99 chr3 167995619 167995934 -50041224 - L2 LINE L2 -601 2713 2376 2504 67 0 0 chr3 167996060 167996358 -50040800 - AluY SINE Alu -13 298 1 202 299 111 17 chr3 167996709 167996826 -50040332 + L3b LINE CR1 1265 1392 -191 1968 204 76 6 chr3 168000016 168000540 -50036618 + MER63C DNA MER1_type 1 561 -369 200 213 0 0 chr3 168000920 168000967 -50036191 + A-rich Low_complexity Low_complexity 4 50 0 1948 174 3 0 chr3 168001016 168001327 -50035831 - AluJb SINE Alu 0 312 1 2237 106 3 7 chr3 168001445 168001747 -50035411 - AluSg SINE Alu -9 301 1 424 277 96 83 chr3 168001748 168002062 -50035096 - L1MC4a LINE L1 -1866 5942 5625 203 315 87 54 chr3 168003829 168003921 -50033237 - L2 LINE L2 -11 3302 3208 333 0 0 0 chr3 168005279 168005316 -50031842 + (TA)n Simple_repeat Simple_repeat 1 37 0 2791 239 30 50 chr3 168005405 168006208 -50030950 + MER21B LTR ERV1 19 805 -58 21 0 0 0 chr3 168007060 168007081 -50030077 + AT_rich Low_complexity Low_complexity 1 21 0 2250 65 65 0 chr3 168007081 168007372 -50029786 - AluY SINE Alu -1 310 1 485 277 33 82 chr3 168008361 168008545 -50028613 - MER5B DNA MER1_type -2 176 2 996 162 29 12 chr3 168008571 168008744 -50028414 + MER5A DNA MER1_type 1 176 -13 1472 165 42 0 chr3 168008744 168009053 -50028105 + MER33 DNA MER1_type 2 323 -1 3464 102 10 10 chr3 168009096 168009607 -50027551 + MER9 LTR ERVK 1 511 0 1955 166 74 15 chr3 168010698 168011064 -50026094 + MSTA LTR MaLR 2 396 -32 1912 93 0 4 chr3 168011064 168011312 -50025846 - AluY SINE Alu -18 293 47 1955 166 74 15 chr3 168011312 168011348 -50025810 + MSTA LTR MaLR 396 428 0 22 0 0 0 chr3 168011935 168011957 -50025201 + AT_rich Low_complexity Low_complexity 1 22 0 2969 101 13 26 chr3 168012282 168012749 -50024409 + MER4C LTR ERV1 1 461 -4 467 267 97 90 chr3 168013131 168013565 -50023593 + LTR33A LTR ERVL 3 439 -84 4466 13 7 0 chr3 168013853 168014392 -50022766 - L1P1 LINE L1 -345 5810 5268 2656 18 0 0 chr3 168014391 168014719 -50022439 + L1P1 LINE L1 4928 5255 -891 * 1321 147 42 128 chr3 168014983 168015413 -50021745 + pTR5 LTR ERV1 1120 1512 -926 1207 177 29 0 chr3 168016391 168016600 -50020558 - MER20 DNA MER1_type -4 215 1 1726 216 65 16 chr3 168017633 168018078 -50019080 + MLT1C LTR MaLR 1 467 0 1029 286 64 23 chr3 168018446 168018474 -50018684 - LTR16B LTR ERVL -5 459 434 2399 140 70 2 chr3 168018474 168018875 -50018283 + MSTA LTR MaLR 1 428 0 1029 286 64 23 chr3 168018875 168019286 -50017872 - LTR16B LTR ERVL -30 434 2 2384 100 0 3 chr3 168019717 168020027 -50017131 + AluSq SINE Alu 1 309 -4 388 220 27 47 chr3 168020464 168020614 -50016544 + MER103 DNA DNA 20 166 0 398 176 22 11 chr3 168022271 168022362 -50014796 - MER94 DNA DNA -1 133 42 2230 96 3 3 chr3 168022389 168022682 -50014476 + AluSc SINE Alu 1 293 -16 22 35 0 0 chr3 168023833 168023862 -50013296 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr3 168024083 168024109 -50013049 + AT_rich Low_complexity Low_complexity 1 26 0 1377 219 30 41 chr3 168024653 168025022 -50012136 - MLT1A1 LTR MaLR 0 365 1 2186 109 0 17 chr3 168025183 168025485 -50011673 - AluSx SINE Alu -4 308 12 390 369 56 25 chr3 168026056 168026216 -50010942 - L2 LINE L2 -4 3268 3104 2085 135 6 6 chr3 168026320 168026632 -50010526 + AluSx SINE Alu 1 312 0 252 319 26 35 chr3 168026753 168026869 -50010289 + MLT1K LTR MaLR 358 472 -116 23 68 0 0 chr3 168027101 168027145 -50010013 + AT_rich Low_complexity Low_complexity 1 44 0 481 262 48 52 chr3 168027330 168027601 -50009557 + pTR5 LTR ERV1 743 1012 -1426 3635 140 42 47 chr3 168027702 168028516 -50008642 + LTR12 LTR ERV1 1 2432 -6 183 200 246 0 chr3 168028588 168028653 -50008505 + L2 LINE L2 3193 3273 -40 387 214 58 7 chr3 168029367 168029521 -50007637 - L1MC5 LINE L1 -105 7856 7695 2102 118 7 16 chr3 168029521 168029827 -50007331 + AluSc SINE Alu 1 303 -6 228 279 29 48 chr3 168030237 168030341 -50006817 - MIR SINE MIR -71 191 90 21 36 0 0 chr3 168031137 168031165 -50005993 + AT_rich Low_complexity Low_complexity 1 28 0 29 47 0 0 chr3 168031267 168031310 -50005848 + AT_rich Low_complexity Low_complexity 1 43 0 284 294 80 59 chr3 168031451 168031740 -50005418 + MLT1K LTR MaLR 143 437 -151 533 288 75 20 chr3 168032167 168032459 -50004699 + MLT1H LTR MaLR 1 308 -241 1413 229 94 30 chr3 168033531 168033986 -50003172 + MLT2B1 LTR ERVL 5 535 -19 410 107 0 27 chr3 168034010 168034085 -50003073 + (TCTG)n Simple_repeat Simple_repeat 2 74 0 2407 97 0 0 chr3 168034534 168034843 -50002315 - AluSq SINE Alu -4 309 1 196 203 95 54 chr3 168035113 168035187 -50001971 - L2 LINE L2 -455 2859 2783 22 0 0 0 chr3 168036396 168036418 -50000740 + AT_rich Low_complexity Low_complexity 1 22 0 1130 238 129 29 chr3 168037912 168038453 -49998705 + L2 LINE L2 2619 3225 -88 1214 182 40 43 chr3 168038465 168038767 -49998391 - L1MD2 LINE L1 -12 6347 6047 21 0 0 0 chr3 168038953 168038974 -49998184 + AT_rich Low_complexity Low_complexity 1 21 0 2006 88 0 0 chr3 168038975 168039235 -49997923 + AluY SINE Alu 41 300 -11 21 0 0 0 chr3 168040355 168040376 -49996782 + AT_rich Low_complexity Low_complexity 1 21 0 382 268 27 0 chr3 168040568 168040680 -49996478 + L1ME LINE L1 5571 5685 -436 2230 80 0 7 chr3 168040680 168041002 -49996156 - AluY SINE Alu 0 320 1 385 234 7 92 chr3 168041482 168041623 -49995535 - MIR SINE MIR -84 178 50 629 331 81 19 chr3 168042105 168042745 -49994413 - HAL1b LINE L1 -570 778 99 24 53 0 0 chr3 168042745 168042783 -49994375 + AT_rich Low_complexity Low_complexity 1 38 0 1908 108 21 48 chr3 168042975 168043308 -49993850 - MER1B DNA MER1_type -6 333 10 1814 109 19 0 chr3 168043308 168043573 -49993585 + L1PA10 LINE L1 5895 6164 -4 475 260 91 21 chr3 168043609 168043798 -49993360 + MIR SINE MIR 59 262 0 438 280 0 0 chr3 168045157 168045250 -49991908 - L2 LINE L2 0 3313 3221 1176 307 55 54 chr3 168045280 168045951 -49991207 - L2 LINE L2 -2115 1199 528 225 324 0 42 chr3 168045930 168046001 -49991157 - MIR SINE MIR -78 130 63 * 336 326 191 11 chr3 168046229 168046591 -49990567 - L2 LINE L2 -991 2323 1897 355 243 76 21 chr3 168046863 168047007 -49990151 - MER103 DNA DNA -1 165 14 1794 65 5 0 chr3 168047207 168047424 -49989734 + AluY SINE Alu 1 218 -93 298 95 0 0 chr3 168047424 168047466 -49989692 + AluY SINE Alu 253 294 -8 351 113 0 0 chr3 168047468 168047521 -49989637 + (TA)n Simple_repeat Simple_repeat 1 53 0 225 0 0 0 chr3 168047852 168047877 -49989281 + (T)n Simple_repeat Simple_repeat 1 25 0 288 132 0 0 chr3 168048124 168048177 -49988981 + L1P4 LINE L1 5728 5780 -388 2512 36 7 3 chr3 168048177 168048480 -49988678 + AluY SINE Alu 1 304 -7 207 333 171 0 chr3 168048890 168049001 -49988157 + MIR SINE MIR 47 176 -86 4793 104 69 51 chr3 168049002 168050433 -49986725 - pTR5 LTR ERV1 0 2606 1524 3920 173 51 50 chr3 168051070 168051918 -49985240 + MER21B LTR ERV1 1 849 -14 357 349 57 37 chr3 168052437 168052789 -49984369 - L2 LINE L2 -1965 1349 991 1005 309 105 4 chr3 168053085 168053541 -49983617 + L2 LINE L2 2375 2876 -438 531 177 44 39 chr3 168053547 168053728 -49983430 + Charlie5 DNA MER1_type 2404 2585 -27 898 280 71 0 chr3 168053747 168054015 -49983143 - MLT2E LTR ERVL -307 321 35 348 366 49 12 chr3 168054056 168054220 -49982938 + L3 LINE CR1 1126 1295 -282 780 339 12 8 chr3 168054324 168054575 -49982583 + L3 LINE CR1 1319 1570 -7 819 266 95 12 chr3 168054962 168055214 -49981944 + L2 LINE L2 2471 2743 -571 495 268 98 30 chr3 168055275 168055611 -49981547 - L1ME4a LINE L1 -47 6074 5716 4006 133 20 126 chr3 168057474 168059022 -49978136 - pTR5 LTR ERV1 0 2606 1524 2408 56 0 23 chr3 168059261 168059567 -49977591 + AluY SINE Alu 1 299 -12 371 331 120 0 chr3 168060276 168060418 -49976740 + MIR SINE MIR 5 163 -99 23 33 0 0 chr3 168060604 168060634 -49976524 + AT_rich Low_complexity Low_complexity 1 30 0 347 325 120 73 chr3 168061477 168062369 -49974789 - L2 LINE L2 -267 3005 2075 1624 199 13 51 chr3 168064304 168064697 -49972461 - MER89 LTR ERV1 0 559 182 225 194 194 0 chr3 168064695 168064762 -49972396 - MER89 LTR ERV1 -479 80 1 * 2105 111 0 0 chr3 168066580 168066859 -49970299 - AluSc SINE Alu -30 279 1 2347 252 48 40 chr3 168066859 168067504 -49969654 + L1ME1 LINE L1 5159 5820 -346 2236 108 7 3 chr3 168067504 168067810 -49969348 + AluSx SINE Alu 1 307 -5 2347 252 48 40 chr3 168067810 168068153 -49969005 + L1ME1 LINE L1 5820 6159 -7 277 247 136 12 chr3 168068180 168068261 -49968897 + MIR3 SINE MIR 115 205 -3 307 191 29 0 chr3 168069262 168069330 -49967828 - MER116 DNA Mariner -5 75 6 237 302 0 0 chr3 168069334 168069397 -49967761 + GA-rich Low_complexity Low_complexity 4 66 0 18164 163 67 20 chr3 168070087 168072068 -49965090 - L1MA3 LINE L1 -212 7512 5626 2581 65 0 0 chr3 168072068 168072375 -49964783 + AluY SINE Alu 2 308 -3 18164 163 67 20 chr3 168072375 168073465 -49963693 - L1MA3 LINE L1 -2098 5626 4589 252 0 0 0 chr3 168073465 168073493 -49963665 + (TTTC)n Simple_repeat Simple_repeat 1 28 0 18164 163 67 20 chr3 168073493 168075421 -49961737 - L1MA3 LINE L1 -3135 4589 2754 2427 84 0 0 chr3 168075421 168075719 -49961439 - AluY SINE Alu -13 298 1 18164 163 67 20 chr3 168075719 168077868 -49959290 - L1MA3 LINE L1 -4970 2754 7 219 323 77 0 chr3 168078353 168078418 -49958740 + MIR SINE MIR 82 151 -111 379 216 54 6 chr3 168078474 168078641 -49958517 + (TA)n Simple_repeat Simple_repeat 1 175 0 975 252 101 74 chr3 168079239 168079846 -49957312 + HAL1b LINE L1 413 1035 -313 1582 252 63 46 chr3 168079876 168080454 -49956704 + L1MCa LINE L1 47 554 -5491 2315 208 53 28 chr3 168080559 168081305 -49955853 + L1MCa LINE L1 569 1341 -4848 387 0 0 0 chr3 168081321 168081364 -49955794 + (CA)n Simple_repeat Simple_repeat 2 44 0 932 215 14 23 chr3 168081427 168081641 -49955517 - L1MC/D LINE L1 -2190 5595 5384 531 189 39 102 chr3 168081643 168081849 -49955309 - L1MC/D LINE L1 -2043 4103 3911 1159 200 149 51 chr3 168081856 168082266 -49954892 - L1MC/D LINE L1 -2171 3975 3526 396 132 13 13 chr3 168082264 168082340 -49954818 + L1MD3 LINE L1 7914 7989 -6 * 2387 78 3 3 chr3 168082355 168082662 -49954496 + AluY SINE Alu 1 307 -4 238 252 86 26 chr3 168082684 168082835 -49954323 + HAL1b LINE L1 1146 1305 -43 517 312 47 12 chr3 168083103 168083273 -49953885 + MIR SINE MIR 17 192 -70 242 263 38 0 chr3 168083320 168083400 -49953758 + (CTA)n Simple_repeat Simple_repeat 3 85 0 1481 230 30 20 chr3 168083479 168083875 -49953283 + MER63B DNA MER1_type 1 400 -36 34 65 0 0 chr3 168084102 168084164 -49952994 + AT_rich Low_complexity Low_complexity 1 62 0 693 214 102 0 chr3 168084384 168084580 -49952578 + LTR33 LTR ERVL 306 521 0 22 56 0 0 chr3 168084809 168084845 -49952313 + AT_rich Low_complexity Low_complexity 1 36 0 362 253 152 30 chr3 168085065 168085263 -49951895 - L1MC/D LINE L1 -2974 3172 2951 860 116 0 0 chr3 168085607 168085774 -49951384 - AluY SINE Alu 0 311 173 2337 74 7 0 chr3 168086084 168086382 -49950776 + AluY SINE Alu 1 300 -11 42211 41 26 1 chr3 168087607 168093132 -49944026 - L1P2 LINE L1 -495 5660 1 224 170 57 0 chr3 168093885 168093938 -49943220 + T-rich Low_complexity Low_complexity 1 56 0 1208 34 0 0 chr3 168093958 168094105 -49943053 + L1PA6 LINE L1 6008 6154 0 305 320 0 0 chr3 168094442 168094545 -49942613 + (CATATA)n Simple_repeat Simple_repeat 4 106 0 240 250 197 0 chr3 168095470 168095546 -49941612 - MIR SINE MIR 0 262 172 225 364 0 0 chr3 168095609 168095675 -49941483 - MIR SINE MIR -196 66 1 1035 287 184 33 chr3 168095772 168096686 -49940472 + L2 LINE L2 2188 3294 -19 244 246 0 0 chr3 168096691 168096748 -49940410 - L1ME LINE L1 -569 5552 5496 256 303 234 0 chr3 168097457 168097632 -49939526 - L2 LINE L2 -4 3309 3094 325 175 25 0 chr3 168097803 168097883 -49939275 + L1PA16 LINE L1 6071 6152 -14 525 298 6 23 chr3 168098127 168098298 -49938860 + L2 LINE L2 3146 3313 0 1592 249 15 65 chr3 168098823 168098840 -49938318 - MLT2B1 LTR ERVL -67 453 437 2230 114 0 3 chr3 168098840 168099147 -49938011 + AluSx SINE Alu 1 306 -6 1592 249 15 65 chr3 168099147 168099606 -49937552 - MLT2B1 LTR ERVL -83 437 1 1904 167 0 0 chr3 168100238 168100531 -49936627 + AluSx SINE Alu 1 293 -19 261 0 0 0 chr3 168100758 168100787 -49936371 + (TA)n Simple_repeat Simple_repeat 2 30 0 2391 99 0 0 chr3 168100787 168101091 -49936067 - AluSq SINE Alu -9 304 1 336 261 281 30 chr3 168102074 168102369 -49934789 + L2 LINE L2 2501 2869 -445 275 315 44 28 chr3 168102367 168102548 -49934610 + L2 LINE L2 3046 3229 -84 * 2047 130 13 0 chr3 168102655 168102954 -49934204 + AluSx SINE Alu 1 303 -9 21 36 0 0 chr3 168103510 168103538 -49933620 + AT_rich Low_complexity Low_complexity 1 28 0 290 237 237 0 chr3 168104351 168104448 -49932710 - MIR SINE MIR -12 250 131 1866 99 25 11 chr3 168104558 168104840 -49932318 - L1PA8 LINE L1 0 6172 5887 463 146 22 0 chr3 168105579 168105668 -49931490 - L1MA5A LINE L1 -5 6292 6202 2672 100 51 3 chr3 168105668 168106057 -49931101 + MLT2A2 LTR ERVL 14 421 -32 5593 152 40 27 chr3 168106139 168107236 -49929922 - L1MA5A LINE L1 -84 6213 5084 2253 121 0 3 chr3 168107236 168107549 -49929609 - AluSx SINE Alu 0 312 1 5593 152 40 27 chr3 168107549 168108489 -49928669 - L1MA5A LINE L1 -1213 5084 4157 241 348 216 13 chr3 168110022 168110407 -49926751 - L2 LINE L2 -586 2728 2266 655 280 9 28 chr3 168110508 168110719 -49926439 + MIR SINE MIR 7 213 -49 289 169 56 0 chr3 168110746 168110817 -49926341 - MER116 DNA Mariner 0 80 6 275 0 29 0 chr3 168112128 168112163 -49924995 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 2321 60 27 10 chr3 168112204 168112504 -49924654 - AluY SINE Alu -6 305 1 21 71 0 0 chr3 168112544 168112586 -49924572 + AT_rich Low_complexity Low_complexity 1 42 0 358 304 43 68 chr3 168112806 168113013 -49924145 + L1ME1 LINE L1 3984 4185 -1961 360 141 24 24 chr3 168113090 168113175 -49923983 + GA-rich Low_complexity Low_complexity 2 86 0 862 255 100 32 chr3 168113182 168113492 -49923666 - MLT1J LTR MaLR -110 401 71 409 278 53 73 chr3 168113631 168113876 -49923282 + L1ME1 LINE L1 5628 5867 -299 24 32 0 0 chr3 168113883 168113914 -49923244 + AT_rich Low_complexity Low_complexity 1 31 0 2265 80 0 0 chr3 168113917 168114203 -49922955 + AluY SINE Alu 17 302 -9 344 302 60 17 chr3 168114340 168114456 -49922702 - MIR SINE MIR -111 151 31 280 383 58 0 chr3 168115062 168115182 -49921976 + L2 LINE L2 3146 3272 0 645 269 159 22 chr3 168115715 168116147 -49921011 + MLT1G LTR MaLR 51 590 0 971 284 251 32 chr3 168116166 168116560 -49920598 + L2 LINE L2 2033 2339 -974 2438 54 0 38 chr3 168116560 168116874 -49920284 - AluY SINE Alu -9 302 1 971 284 251 32 chr3 168116874 168117522 -49919636 + L2 LINE L2 2339 3312 -1 656 290 83 5 chr3 168119014 168119231 -49917927 + MIR SINE MIR 2 235 -27 2344 78 16 10 chr3 168119245 168119554 -49917604 - AluY SINE Alu 0 311 1 226 313 12 12 chr3 168119598 168119678 -49917480 - L2 LINE L2 -16 3297 3218 1149 283 71 36 chr3 168119740 168120486 -49916672 + L2 LINE L2 2544 3312 -1 315 111 0 0 chr3 168120586 168120631 -49916527 - MADE1 DNA Mariner -35 45 1 1385 190 75 3 chr3 168120640 168120935 -49916223 + Tigger3(Golem) DNA MER2_type 2 317 -2712 225 197 42 0 chr3 168120940 168121011 -49916147 + (TA)n Simple_repeat Simple_repeat 2 75 0 1763 76 0 0 chr3 168121014 168121239 -49915919 + Tigger3b DNA MER2_type 347 571 -660 5938 213 61 3 chr3 168121239 168122760 -49914398 + L1M1 LINE L1 3492 5105 -2460 350 155 0 12 chr3 168122761 168122845 -49914313 + (TA)n Simple_repeat Simple_repeat 2 84 0 255 138 0 69 chr3 168122845 168122903 -49914255 + L1M1 LINE L1 5052 5105 -2460 312 264 0 46 chr3 168122904 168122991 -49914167 + L1MC4 LINE L1 6621 6703 -1339 * 361 224 29 0 chr3 168122979 168123083 -49914075 + L1MC4 LINE L1 1995 6983 -1339 2156 110 3 3 chr3 168123101 168123393 -49913765 + AluSc SINE Alu 4 295 -14 8225 205 19 20 chr3 168123393 168125391 -49911767 + L1 LINE L1 2968 4963 -1183 2767 110 28 65 chr3 168125393 168125856 -49911302 - MLT2A2 LTR ERVL -7 446 1 6097 66 34 0 chr3 168125856 168126656 -49910502 - HERVL-A2 LTR ERVL 0 5654 4828 2087 89 63 0 chr3 168126656 168126958 -49910200 + L1PB1 LINE L1 5462 5782 -369 670 22 33 0 chr3 168126960 168127051 -49910107 + (TAGA)n Simple_repeat Simple_repeat 1 94 0 613 118 11 11 chr3 168127056 168127149 -49910009 + AluSq/x SINE Alu 14 106 -207 2138 136 11 24 chr3 168127156 168127530 -49909628 + L1PB1 LINE L1 5783 6151 0 9906 123 102 90 chr3 168127599 168128812 -49908346 + Tigger1 DNA MER2_type 278 1475 -943 1755 164 7 0 chr3 168128812 168129086 -49908072 + AluSx SINE Alu 1 276 -36 9906 123 102 90 chr3 168129086 168129134 -49908024 + Tigger1 DNA MER2_type 1475 1521 -897 327 49 0 0 chr3 168129134 168129175 -49907983 + (GGAA)n Simple_repeat Simple_repeat 4 44 0 9906 123 102 90 chr3 168129175 168130027 -49907131 + Tigger1 DNA MER2_type 1521 2417 -1 1314 158 23 0 chr3 168130028 168130243 -49906915 + Tigger3b DNA MER2_type 1013 1232 0 2430 79 3 0 chr3 168130719 168131022 -49906136 - AluSp SINE Alu -9 304 1 369 298 84 0 chr3 168131300 168131431 -49905727 - MIR SINE MIR -21 241 100 519 322 29 6 chr3 168132058 168132229 -49904929 - MIR3 SINE MIR -18 190 16 2378 65 10 3 chr3 168133070 168133363 -49903795 + AluSc SINE Alu 1 295 -14 1293 109 0 0 chr3 168133510 168133675 -49903483 + AluSx SINE Alu 1 165 -147 482 326 73 50 chr3 168134140 168134523 -49902635 + L3 LINE CR1 370 761 -816 2073 147 46 20 chr3 168135255 168135602 -49901556 - MSTC LTR MaLR -4 424 69 380 71 80 9 chr3 168135699 168135812 -49901346 + (TA)n Simple_repeat Simple_repeat 1 121 0 2988 63 0 0 chr3 168135814 168136194 -49900964 - L1PA8 LINE L1 -10 6162 5783 475 184 0 0 chr3 168136196 168136272 -49900886 - MSTC LTR MaLR -315 81 6 522 262 194 24 chr3 168136384 168136590 -49900568 - L2 LINE L2 -7 3306 3066 2191 50 0 60 chr3 168137165 168137491 -49899667 - AluY SINE Alu 0 308 1 23 0 0 0 chr3 168137494 168137517 -49899641 + AT_rich Low_complexity Low_complexity 1 23 0 831 121 85 0 chr3 168137890 168138031 -49899127 + L1PA16 LINE L1 5756 5908 -258 5346 185 14 12 chr3 168138031 168138184 -49898974 + L1PA15 LINE L1 4182 4333 -1832 2217 99 7 0 chr3 168138184 168138478 -49898680 + AluSq SINE Alu 1 296 -17 5346 185 14 12 chr3 168138478 168140268 -49896890 + L1PA15 LINE L1 4333 6164 -1 1452 185 7 7 chr3 168140268 168140539 -49896619 + L1PA16 LINE L1 5879 6165 -1 692 304 74 26 chr3 168140850 168141080 -49896078 + MIR SINE MIR 7 247 -15 268 151 19 0 chr3 168141147 168141200 -49895958 + MER103 DNA DNA 7 60 -106 23 78 0 0 chr3 168142887 168142938 -49894220 + AT_rich Low_complexity Low_complexity 1 51 0 393 284 57 21 chr3 168142948 168143247 -49893911 - L1MC/D LINE L1 -490 5631 5492 206 121 0 0 chr3 168144794 168144827 -49892331 + (T)n Simple_repeat Simple_repeat 1 33 0 228 24 48 24 chr3 168144935 168144977 -49892181 + (TC)n Simple_repeat Simple_repeat 1 43 0 8114 212 9 16 chr3 168145094 168146945 -49890213 - L1PA13 LINE L1 -1014 5783 3945 4643 217 18 36 chr3 168146934 168148220 -49888938 - L1PA13 LINE L1 -3557 3240 1989 * 2233 127 0 0 chr3 168148220 168148527 -49888631 - AluSq SINE Alu -6 307 1 4643 217 18 36 chr3 168148527 168149240 -49887918 - L1PA13 LINE L1 -4808 1989 1265 1588 315 71 11 chr3 168149382 168149928 -49887230 - L1PA13 LINE L1 -6136 651 73 1813 190 28 19 chr3 168149931 168149982 -49887176 - L1 LINE L1 -1251 4895 4846 2096 160 41 50 chr3 168149982 168150420 -49886738 + Tigger2a DNA MER2_type 1 434 0 1813 190 28 19 chr3 168150420 168150795 -49886363 - L1 LINE L1 -1300 4846 4465 566 203 0 30 chr3 168150802 168150935 -49886223 + L1MA3 LINE L1 5122 5250 -896 1786 209 0 0 chr3 168150943 168151250 -49885908 + AluJb SINE Alu 1 307 -5 13969 208 44 14 chr3 168151269 168155511 -49881647 + L1PA13 LINE L1 576 4964 -1833 1566 154 17 14 chr3 168155516 168155809 -49881349 + L1MA3 LINE L1 5724 6017 -288 1947 185 26 17 chr3 168155811 168155853 -49881305 + L1MB1 LINE L1 5745 5785 -383 2932 158 27 73 chr3 168155853 168156484 -49880674 + MER7C DNA MER2_type 1 602 0 1947 185 26 17 chr3 168156484 168156858 -49880300 + L1MB1 LINE L1 5785 6165 -3 308 270 49 18 chr3 168156867 168157030 -49880128 + L1M4 LINE L1 2489 2656 -3490 23 0 0 0 chr3 168157062 168157085 -49880073 + AT_rich Low_complexity Low_complexity 1 23 0 219 146 49 0 chr3 168157091 168157132 -49880026 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 5907 82 75 31 chr3 168157140 168158168 -49878990 - L1PA8 LINE L1 -13 6159 5117 429 20 0 0 chr3 168158399 168158449 -49878709 + (CA)n Simple_repeat Simple_repeat 1 50 0 316 75 38 25 chr3 168158514 168158594 -49878564 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 244 83 28 0 chr3 168158801 168158837 -49878321 - Alu SINE Alu -262 37 1 193 274 130 36 chr3 168158974 168159140 -49878018 - MIR SINE MIR -49 213 32 922 233 55 0 chr3 168159397 168159599 -49877559 - MER20 DNA MER1_type 0 219 7 2201 56 7 21 chr3 168159923 168160233 -49876925 - AluY SINE Alu 0 306 1 1471 230 33 23 chr3 168160526 168160922 -49876236 + MER63B DNA MER1_type 1 400 -36 5649 165 20 38 chr3 168161010 168163085 -49874073 - L1MA4 LINE L1 -58 7661 5621 1998 152 17 17 chr3 168163085 168163440 -49873718 - THE1A LTR MaLR 0 355 1 8684 105 26 0 chr3 168163440 168164628 -49872530 - THE1A-int LTR MaLR 0 1580 362 * 12117 32 0 0 chr3 168164626 168166110 -49871048 - L1PA3 LINE L1 -2254 3892 2409 12559 31 1 0 chr3 168166110 168168376 -49868782 + L1PA3 LINE L1 3887 6152 -3 2759 66 27 0 chr3 168168387 168168752 -49868406 - THE1A-int LTR MaLR -1205 375 1 306 0 0 0 chr3 168168781 168168815 -49868343 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1717 152 14 10 chr3 168168815 168169112 -49868046 - THE1A LTR MaLR -57 298 1 1021 208 0 0 chr3 168169112 168169304 -49867854 - L1MA4 LINE L1 -1940 5625 5434 * 2367 222 37 57 chr3 168169294 168170560 -49866598 - L1MA4 LINE L1 -3549 4016 2774 23 0 0 0 chr3 168171253 168171276 -49865882 + AT_rich Low_complexity Low_complexity 1 23 0 415 261 54 0 chr3 168172592 168172703 -49864455 - L2 LINE L2 0 3313 3197 33 25 0 0 chr3 168172745 168172785 -49864373 + AT_rich Low_complexity Low_complexity 1 40 0 5844 151 32 29 chr3 168172790 168174916 -49862242 - L1MA6 LINE L1 -17 6283 4130 21 36 0 0 chr3 168175804 168175832 -49861326 + AT_rich Low_complexity Low_complexity 1 28 0 956 216 10 0 chr3 168176755 168176959 -49860199 + MER3 DNA MER1_type 2 207 -2 480 272 69 53 chr3 168176987 168177233 -49859925 - MLT1K LTR MaLR -3 585 336 315 313 101 0 chr3 168177914 168178013 -49859145 - MER5B DNA MER1_type -63 115 7 488 275 89 94 chr3 168178341 168178712 -49858446 + HAL1b LINE L1 1 369 -979 2501 195 10 73 chr3 168178950 168179539 -49857619 - MLT2B3 LTR ERVL -2 552 1 410 306 125 21 chr3 168180077 168180365 -49856793 - MLT1L LTR MaLR -44 571 254 284 137 77 0 chr3 168180602 168180719 -49856439 + (TA)n Simple_repeat Simple_repeat 1 126 0 301 279 129 20 chr3 168181445 168181592 -49855566 + L1ME LINE L1 5507 5669 -452 303 28 0 0 chr3 168181673 168181709 -49855449 + (TG)n Simple_repeat Simple_repeat 1 36 0 2112 127 0 9 chr3 168182229 168182545 -49854613 + AluSq SINE Alu 1 313 0 24 32 0 0 chr3 168182667 168182698 -49854460 + AT_rich Low_complexity Low_complexity 1 31 0 580 12 0 49 chr3 168182991 168183073 -49854085 + L1PA3 LINE L1 6078 6155 0 389 278 47 41 chr3 168183842 168184011 -49853147 - L2 LINE L2 -8 3305 3136 2436 66 0 10 chr3 168184090 168184394 -49852764 - AluY SINE Alu -10 301 1 324 120 0 0 chr3 168184405 168184415 -49852743 + (TG)n Simple_repeat Simple_repeat 1 60 0 324 120 0 0 chr3 168184415 168184465 -49852693 + (TG)n Simple_repeat Simple_repeat 2 51 0 238 239 119 15 chr3 168184508 168184575 -49852583 - MIR SINE MIR -33 229 156 3650 36 7 2 chr3 168184739 168185183 -49851975 - L1PA5 LINE L1 0 6154 5709 350 304 54 38 chr3 168185477 168185749 -49851409 - L1MC/D LINE L1 -425 5753 5536 236 240 171 7 chr3 168185810 168185956 -49851202 - L1MC/D LINE L1 -693 5428 5259 387 41 0 0 chr3 168186015 168186064 -49851094 + (TA)n Simple_repeat Simple_repeat 2 50 0 630 272 24 93 chr3 168186068 168186314 -49850844 - MIR SINE MIR -26 236 8 409 306 79 89 chr3 168186335 168186673 -49850485 - L1MC/D LINE L1 -1010 5136 4803 567 137 60 8 chr3 168186673 168186790 -49850368 - L1PB2 LINE L1 -1 6150 6028 409 306 79 89 chr3 168186790 168186921 -49850237 - L1MC/D LINE L1 -1343 4803 4672 1979 126 33 3 chr3 168187000 168187302 -49849856 - AluSx SINE Alu -1 311 1 509 166 89 76 chr3 168187940 168188097 -49849061 - LTR45 LTR ERV1 0 525 331 314 276 135 31 chr3 168188451 168188614 -49848544 - L1M4 LINE L1 -373 5801 5622 1002 240 137 21 chr3 168188614 168188943 -49848215 - MLT1F LTR MaLR 0 542 176 285 98 0 0 chr3 168189009 168189050 -49848108 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 636 70 0 0 chr3 168189339 168189425 -49847733 + (TC)n Simple_repeat Simple_repeat 1 86 0 567 313 49 38 chr3 168189466 168189754 -49847404 - L1M4 LINE L1 -511 5651 5361 697 272 31 30 chr3 168189865 168190141 -49847017 + L1MCa LINE L1 1443 1962 -825 728 129 0 27 chr3 168190204 168190351 -49846807 + (GGAA)n Simple_repeat Simple_repeat 1 143 0 1038 158 0 6 chr3 168190464 168190628 -49846530 + AluJb SINE Alu 142 304 -8 2341 55 0 7 chr3 168191239 168191530 -49845628 - AluY SINE Alu 0 311 23 408 330 104 6 chr3 168195061 168195243 -49841915 - MIR SINE MIR -16 246 47 300 296 82 0 chr3 168195329 168195464 -49841694 + L1ME4a LINE L1 5971 6116 -5 184 361 83 8 chr3 168196284 168196417 -49840741 + MIR3 SINE MIR 58 200 -8 2458 187 24 30 chr3 168198011 168198518 -49838640 + MLT1D LTR MaLR 1 504 -1 208 336 164 0 chr3 168198821 168198937 -49838221 - MIR SINE MIR -81 181 47 2679 13 7 0 chr3 168199347 168199648 -49837510 - AluY SINE Alu -8 303 1 1901 134 7 4 chr3 168199843 168200147 -49837011 + AluSx SINE Alu 5 309 0 5091 102 66 25 chr3 168200229 168201374 -49835784 + L1PA12 LINE L1 4630 5835 -333 2262 111 3 0 chr3 168201374 168201681 -49835477 + AluSc SINE Alu 1 308 -1 5091 102 66 25 chr3 168201681 168202014 -49835144 + L1PA12 LINE L1 5835 6153 -15 198 0 0 0 chr3 168202017 168202039 -49835119 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 2289 115 0 0 chr3 168202376 168202784 -49834374 + AluSx SINE Alu 3 410 0 731 266 30 53 chr3 168202945 168203284 -49833874 + HAL1b LINE L1 211 541 -807 2171 79 11 0 chr3 168203780 168204057 -49833101 + AluY SINE Alu 1 280 -31 3117 113 9 4 chr3 168204057 168204508 -49832650 + LOR1a LTR ERV1 45 497 0 2271 98 0 0 chr3 168205179 168205464 -49831694 + AluSc SINE Alu 1 285 -24 2080 101 7 20 chr3 168206895 168207191 -49829967 + AluSc SINE Alu 1 292 -17 674 298 84 51 chr3 168207356 168207712 -49829446 + L3 LINE CR1 1075 1442 -135 300 351 45 0 chr3 168208151 168208262 -49828896 + L2 LINE L2 3157 3272 0 181 324 95 14 chr3 168208291 168208365 -49828793 - L2 LINE L2 -39 3233 3154 230 286 143 0 chr3 168208400 168208463 -49828695 + L3 LINE CR1 1505 1576 -1 1882 149 44 3 chr3 168208495 168208791 -49828367 + AluJb SINE Alu 1 308 -4 300 70 0 0 chr3 168208808 168208851 -49828307 + (GA)n Simple_repeat Simple_repeat 2 44 0 331 256 145 8 chr3 168209205 168209322 -49827836 - MIR SINE MIR -105 157 25 23 54 0 0 chr3 168209649 168209686 -49827472 + AT_rich Low_complexity Low_complexity 1 37 0 1156 335 82 39 chr3 168211198 168212020 -49825138 - HERV16 LTR ERVL -764 4890 4034 1886 280 54 29 chr3 168212199 168212832 -49824326 - HERV16 LTR ERVL -2670 2326 1673 1857 139 0 77 chr3 168212832 168213038 -49824120 - AluSx SINE Alu -1 311 139 2132 136 0 0 chr3 168213038 168213347 -49823811 - AluSc SINE Alu 0 309 1 1857 139 0 77 chr3 168213347 168213477 -49823681 - AluSx SINE Alu -173 139 1 1886 280 54 29 chr3 168213477 168213528 -49823630 - HERV16 LTR ERVL -3323 1673 1625 206 62 31 0 chr3 168213640 168213672 -49823486 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 262 251 18 88 chr3 168213741 168213912 -49823246 - HERV16 LTR ERVL -4341 1423 1265 1471 305 74 30 chr3 168213944 168214622 -49822536 - HERV16 LTR ERVL -3909 1087 380 600 318 86 55 chr3 168214929 168215142 -49822016 - LTR16A LTR ERVL -1 449 244 4030 162 98 0 chr3 168215142 168215894 -49821264 + LTR1B LTR ERV1 1 826 0 600 318 86 55 chr3 168215894 168216101 -49821057 - LTR16A LTR ERVL -206 244 16 24 32 0 0 chr3 168217028 168217059 -49820099 + AT_rich Low_complexity Low_complexity 1 31 0 219 385 83 0 chr3 168217108 168217204 -49819954 - L2 LINE L2 -20 3252 3149 220 313 75 57 chr3 168217662 168217943 -49819215 - L2 LINE L2 -2277 1037 752 1083 78 7 7 chr3 168218602 168218755 -49818403 - L1PA8 LINE L1 -139 6033 5881 870 100 0 0 chr3 168218755 168218868 -49818290 + L1PA7 LINE L1 6018 6137 -17 5771 63 0 2 chr3 168218879 168220133 -49817025 + L1PA7 LINE L1 4729 5979 -175 406 302 15 78 chr3 168220583 168220788 -49816370 + L2 LINE L2 3122 3313 0 24 32 0 0 chr3 168221472 168221503 -49815655 + AT_rich Low_complexity Low_complexity 1 31 0 2244 102 0 0 chr3 168221874 168222169 -49814989 - AluSc SINE Alu -14 295 1 558 301 58 35 chr3 168222669 168222842 -49814316 + MER5B DNA MER1_type 2 178 0 24 0 0 0 chr3 168222957 168222981 -49814177 + AT_rich Low_complexity Low_complexity 1 24 0 33 0 0 0 chr3 168224444 168224477 -49812681 + AT_rich Low_complexity Low_complexity 1 33 0 286 307 33 20 chr3 168224594 168224744 -49812414 + HAL1 LINE L1 1411 1562 -945 261 0 0 0 chr3 168224800 168224829 -49812329 + (TG)n Simple_repeat Simple_repeat 2 30 0 264 139 0 0 chr3 168224871 168224914 -49812244 - L1M1 LINE L1 -545 5758 5716 34 65 0 0 chr3 168224916 168224978 -49812180 + AT_rich Low_complexity Low_complexity 1 62 0 3842 131 11 22 chr3 168225050 168225676 -49811482 - L1PA15 LINE L1 -5 6160 5542 510 306 67 14 chr3 168225987 168226196 -49810962 + MIR SINE MIR 43 262 0 211 328 0 0 chr3 168227093 168227151 -49810007 + MIR3 SINE MIR 113 170 -38 2077 66 0 0 chr3 168227153 168227409 -49809749 + AluY SINE Alu 37 292 -19 1257 138 26 0 chr3 168227901 168228096 -49809062 - L1P4 LINE L1 -531 5635 5436 4141 29 35 2 chr3 168228209 168228720 -49808438 + L1PA2 LINE L1 5625 6152 -3 285 326 21 7 chr3 168229254 168229398 -49807760 - L1M4 LINE L1 -923 5223 5078 22 0 0 0 chr3 168230219 168230241 -49806917 + AT_rich Low_complexity Low_complexity 1 22 0 22 80 0 0 chr3 168230688 168230738 -49806420 + AT_rich Low_complexity Low_complexity 1 50 0 244 265 0 0 chr3 168230835 168230884 -49806274 + MER5A DNA MER1_type 141 189 0 21 0 0 0 chr3 168230921 168230942 -49806216 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr3 168231219 168231250 -49805908 + AT_rich Low_complexity Low_complexity 1 31 0 2323 82 7 3 chr3 168231290 168231594 -49805564 + AluY SINE Alu 1 305 -6 232 236 36 0 chr3 168233197 168233252 -49803906 + L2 LINE L2 3216 3272 0 22 0 0 0 chr3 168233278 168233300 -49803858 + AT_rich Low_complexity Low_complexity 1 22 0 483 234 66 15 chr3 168233557 168233694 -49803464 + MIR SINE MIR 40 183 -79 22 80 0 0 chr3 168234062 168234112 -49803046 + AT_rich Low_complexity Low_complexity 1 50 0 488 216 20 0 chr3 168234263 168234365 -49802793 + AluYb8 SINE Alu 4 107 -211 5775 122 8 2 chr3 168334438 168335435 -49701723 + L1PA14 LINE L1 5158 6160 -1 412 305 34 25 chr3 168336281 168336399 -49700759 + L2 LINE L2 3154 3272 0 253 265 15 44 chr3 168336454 168336522 -49700636 - L2 LINE L2 -2 3270 3205 22 0 0 0 chr3 168337022 168337044 -49700114 + AT_rich Low_complexity Low_complexity 1 22 0 441 300 37 41 chr3 168338354 168338528 -49698630 - MIR SINE MIR -63 145 27 23 0 0 0 chr3 168338537 168338560 -49698598 + AT_rich Low_complexity Low_complexity 1 23 0 243 323 60 18 chr3 168339448 168339580 -49697578 + MIR SINE MIR 15 156 -52 348 223 24 127 chr3 168340011 168340177 -49696981 + L2 LINE L2 3164 3312 -1 2448 81 0 6 chr3 168340484 168340804 -49696354 - AluYb8 SINE Alu 0 318 1 1281 186 32 45 chr3 168340815 168341192 -49695966 - L1MD3 LINE L1 0 7995 7624 244 263 95 89 chr3 168342672 168342851 -49694307 - MIR SINE MIR -72 136 9 248 250 0 0 chr3 168342855 168342923 -49694235 + L1P5 LINE L1 5364 5431 -723 484 277 58 70 chr3 168343034 168343464 -49693694 + L1MC4a LINE L1 5607 6032 -89 213 286 41 0 chr3 168346832 168346930 -49690228 + (TA)n Simple_repeat Simple_repeat 1 102 0 1030 251 40 8 chr3 168347098 168347349 -49689809 + MIR SINE MIR 4 262 0 425 237 93 0 chr3 168347539 168347657 -49689501 + MER3 DNA MER1_type 2 130 -79 2048 128 0 44 chr3 168348598 168348917 -49688241 + AluSx SINE Alu 1 305 -7 409 263 28 110 chr3 168349879 168350052 -49687106 - L1MEc LINE L1 -5409 987 862 1244 72 0 12 chr3 168350052 168350218 -49686940 - L1PA11 LINE L1 0 6174 6011 409 263 28 110 chr3 168350218 168350435 -49686723 - L1MEc LINE L1 -5534 862 629 314 298 136 62 chr3 168350543 168350852 -49686306 - L1MEc LINE L1 -5873 523 192 23 0 0 0 chr3 168351443 168351466 -49685692 + AT_rich Low_complexity Low_complexity 1 23 0 544 271 71 42 chr3 168351515 168351939 -49685219 - HAL1b LINE L1 -91 1257 822 337 358 113 31 chr3 168351964 168352417 -49684741 - L1MC4 LINE L1 -5 8037 7548 24 53 0 0 chr3 168352812 168352850 -49684308 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr3 168352963 168352985 -49684173 + GC_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr3 168352985 168353015 -49684143 + AT_rich Low_complexity Low_complexity 1 30 0 239 193 110 14 chr3 168353118 168353263 -49683895 - AluSx SINE Alu -142 160 2 338 203 89 109 chr3 168353404 168353606 -49683552 + MIR SINE MIR 23 220 -42 433 291 96 18 chr3 168353662 168353882 -49683276 + MIR SINE MIR 20 256 -6 23 0 0 0 chr3 168354939 168354962 -49682196 + AT_rich Low_complexity Low_complexity 1 23 0 193 0 94 0 chr3 168355026 168355058 -49682100 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 529 217 43 0 chr3 168355328 168355443 -49681715 - L2 LINE L2 0 3313 3194 235 312 84 53 chr3 168356048 168356407 -49680751 - MLT1K LTR MaLR -18 570 201 3103 155 10 2 chr3 168357222 168357797 -49679361 - L1P LINE L1 -813 5333 4754 220 265 43 17 chr3 168357967 168358084 -49679074 + (CCCG)n Simple_repeat Simple_repeat 3 122 0 258 87 33 87 chr3 168358096 168358188 -49678970 + (CCCCG)n Simple_repeat Simple_repeat 2 88 0 1357 51 6 0 chr3 168358322 168358500 -49678658 - L1PA8 LINE L1 -308 5864 5686 983 163 60 8 chr3 168358941 168359193 -49677965 - AluSg1 SINE Alu -2 307 43 1551 140 21 0 chr3 168359949 168360214 -49676944 - AluSq SINE Alu 0 308 39 1796 113 3 4 chr3 168360563 168360944 -49676214 - L1P4 LINE L1 -713 5448 5068 1419 197 16 4 chr3 168361907 168362156 -49675002 - AluJb SINE Alu -60 252 1 7496 81 3 4 chr3 168462684 168463730 -49573428 + L1P LINE L1 3932 4976 -1170 377 336 35 40 chr3 168463943 168464169 -49572989 + L1M4 LINE L1 3486 3710 -2436 210 286 0 0 chr3 168465619 168465675 -49571483 + L2 LINE L2 2593 2648 -666 25 0 0 0 chr3 168465715 168465740 -49571418 + AT_rich Low_complexity Low_complexity 1 25 0 1374 106 0 26 chr3 168466079 168466268 -49570890 + AluSg SINE Alu 2 185 -125 189 308 44 16 chr3 168468059 168468127 -49569031 + MIR SINE MIR 79 147 -80 1993 95 3 14 chr3 168468237 168468522 -49568636 - AluSp SINE Alu -31 282 1 669 144 0 0 chr3 168469280 168469384 -49567774 - L1MC/D LINE L1 -545 5799 5696 637 271 20 10 chr3 168469383 168469582 -49567576 + L1M4 LINE L1 4736 4936 -1210 * 1278 182 13 110 chr3 168469684 168469973 -49567185 - L1 LINE L1 -1263 4883 4640 5684 28 0 0 chr3 168469973 168470643 -49566515 - L1PA4 LINE L1 0 6155 5486 1278 182 13 110 chr3 168470643 168470743 -49566415 - L1 LINE L1 -1506 4640 4532 * 2016 318 36 44 chr3 168470742 168471634 -49565524 - L1P LINE L1 -1576 4570 3686 * 7243 115 10 10 chr3 168471620 168473407 -49563751 + L1PA7 LINE L1 4196 5984 -170 8491 168 24 28 chr3 168476337 168477323 -49559835 + L1MA3 LINE L1 3552 4522 -1698 1855 168 0 0 chr3 168477323 168477627 -49559531 + AluSc SINE Alu 1 304 -5 8491 168 24 28 chr3 168477627 168478580 -49558578 + L1MA3 LINE L1 4522 5477 -743 4826 131 25 7 chr3 168478682 168479498 -49557660 + L1MA3 LINE L1 5466 6295 -10 945 305 51 22 chr3 168479545 168480090 -49557068 + L1ME3A LINE L1 5386 5946 -224 1798 121 15 4 chr3 168480160 168480432 -49556726 + AluSq SINE Alu 30 304 -9 301 248 54 107 chr3 168480437 168480586 -49556572 + L1ME3A LINE L1 5944 6084 -86 339 226 132 28 chr3 168480770 168480876 -49556282 - MIR SINE MIR -82 180 64 409 279 122 42 chr3 168480934 168481196 -49555962 + L1ME4a LINE L1 5643 5925 -196 423 284 58 67 chr3 168481236 168481444 -49555714 + L2 LINE L2 1409 1614 -1700 3461 96 0 2 chr3 168482118 168482620 -49554538 - L1PA4 LINE L1 -169 5986 5486 695 213 10 151 chr3 168482612 168482917 -49554241 - L1 LINE L1 -1509 4637 4376 * 30 0 0 0 chr3 168482982 168483012 -49554146 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr3 168483049 168483077 -49554081 + AT_rich Low_complexity Low_complexity 1 28 0 195 42 0 0 chr3 168483618 168483642 -49553516 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 1859 155 0 0 chr3 168483642 168483920 -49553238 - AluSx SINE Alu -32 280 3 26 0 0 0 chr3 168483968 168483994 -49553164 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr3 168485279 168485307 -49551851 + AT_rich Low_complexity Low_complexity 1 28 0 284 350 112 14 chr3 168485998 168486141 -49551017 + MIR SINE MIR 36 192 -70 454 293 21 0 chr3 168486182 168486322 -49550836 - MIR SINE MIR -1 261 119 605 186 108 52 chr3 168486411 168486582 -49550576 - MER5A DNA MER1_type -6 183 2 2395 15 0 0 chr3 168486625 168486899 -49550259 - L1PA2 LINE L1 0 6155 5882 4031 18 0 1 chr3 168486899 168487494 -49549664 + L1P1 LINE L1 4910 5503 -652 1653 212 0 0 chr3 168487507 168487814 -49549344 - AluJo SINE Alu -5 307 1 180 0 0 0 chr3 168489011 168489031 -49548127 + (CAA)n Simple_repeat Simple_repeat 2 21 0 451 183 97 91 chr3 168490033 168490219 -49546939 + MER53 DNA DNA 3 189 0 201 286 0 0 chr3 168490258 168490307 -49546851 + (CAG)n Simple_repeat Simple_repeat 3 51 0 188 191 119 0 chr3 168490417 168490459 -49546699 + L2 LINE L2 3257 3303 -10 243 0 0 0 chr3 168490471 168490498 -49546660 + (TTTTTA)n Simple_repeat Simple_repeat 4 30 0 3638 136 27 8 chr3 168490643 168491237 -49545921 - MER6A DNA MER2_type 0 605 1 239 329 0 0 chr3 168491490 168491560 -49545598 - MIR SINE MIR -107 101 32 215 323 0 73 chr3 168492347 168492443 -49544715 + MIR SINE MIR 1 89 -173 2373 71 3 3 chr3 168493120 168493430 -49543728 - AluY SINE Alu -1 310 1 919 191 38 6 chr3 168494042 168494225 -49542933 + MER5A DNA MER1_type 1 189 0 3973 180 39 4 chr3 168495000 168496322 -49540836 - L1PB4 LINE L1 -92 6064 4702 1856 218 37 22 chr3 168496537 168496996 -49540162 + MLT1E3 LTR MaLR 159 624 0 2077 145 0 0 chr3 168498821 168499125 -49538033 - AluSx SINE Alu -8 304 1 189 74 0 0 chr3 168499320 168499347 -49537811 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 2199 111 0 0 chr3 168499398 168499695 -49537463 + AluSg SINE Alu 1 297 -13 412 375 64 19 chr3 168499840 168500259 -49536899 - L2 LINE L2 -1887 1427 990 2009 223 30 16 chr3 168500465 168500962 -49536196 - MLT1D LTR MaLR -1 504 1 2350 61 3 14 chr3 168501853 168502149 -49535009 - AluSp SINE Alu -18 295 3 759 142 45 0 chr3 168502501 168502635 -49534523 - L1MA7 LINE L1 0 6291 6152 3676 186 26 48 chr3 168503851 168504624 -49532534 - L1M3f LINE L1 -4391 937 182 493 136 57 0 chr3 168504625 168504713 -49532445 - L1M3f LINE L1 -5233 95 3 2126 181 67 110 chr3 168506168 168506859 -49530299 + MER67B LTR ERV1 1 661 0 478 257 139 27 chr3 168506991 168507465 -49529693 + L1M4 LINE L1 2638 3164 -2982 374 370 33 9 chr3 168507667 168507878 -49529280 + L1M4 LINE L1 3486 3701 -2445 270 326 92 31 chr3 168508574 168509325 -49527833 + L1M4 LINE L1 4531 5327 -819 7089 182 36 19 chr3 168509337 168509445 -49527713 + L1 LINE L1 7 112 -7453 2066 129 0 3 chr3 168509445 168509740 -49527418 - AluSg SINE Alu -16 294 1 7089 182 36 19 chr3 168509740 168510921 -49526237 + L1 LINE L1 112 1318 -6247 5100 183 20 25 chr3 168510917 168512065 -49525093 + L1 LINE L1 4306 5447 -2118 * 26 50 0 0 chr3 168512218 168512258 -49524900 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr3 168513230 168513251 -49523907 + AT_rich Low_complexity Low_complexity 1 21 0 6706 71 3 39 chr3 168513698 168514543 -49522615 - L1PA10 LINE L1 -4 6164 5340 2154 102 10 23 chr3 168514543 168514846 -49522312 - AluY SINE Alu -12 299 1 6706 71 3 39 chr3 168514846 168515071 -49522087 - L1PA10 LINE L1 -828 5340 5108 10313 174 31 5 chr3 168515071 168516300 -49520858 + L1P LINE L1 2436 3632 -2514 228 67 0 0 chr3 168516300 168516330 -49520828 + (CAA)n Simple_repeat Simple_repeat 3 32 0 10313 174 31 5 chr3 168516330 168517148 -49520010 + L1P LINE L1 3632 4608 -1538 2577 54 0 0 chr3 168517148 168517445 -49519713 - AluY SINE Alu -14 297 1 10313 174 31 5 chr3 168517445 168517941 -49519217 + L1P LINE L1 4608 5090 -1056 293 89 22 0 chr3 168517943 168517988 -49519170 - L1P LINE L1 -1063 5083 5038 1886 261 109 11 chr3 168518736 168519276 -49517882 - MLT1E LTR MaLR 0 593 1 320 247 41 21 chr3 168519822 168519919 -49517239 + L3 LINE CR1 646 744 -833 2050 159 118 20 chr3 168519948 168520338 -49516820 + MSTA LTR MaLR 1 428 0 9128 150 11 38 chr3 168520340 168521962 -49515196 + MSTA-int LTR MaLR 3 1580 0 1821 118 169 74 chr3 168521962 168522312 -49514846 + MSTA LTR MaLR 1 393 -35 2268 111 0 19 chr3 168522312 168522627 -49514531 - AluY SINE Alu -2 309 1 1821 118 169 74 chr3 168522627 168522667 -49514491 + MSTA LTR MaLR 393 428 0 239 314 167 19 chr3 168522668 168522824 -49514334 + MIR SINE MIR 54 232 -30 558 365 116 21 chr3 168522963 168523439 -49513719 + L3 LINE CR1 782 1302 -275 612 294 44 11 chr3 168523643 168523915 -49513243 - L1MEd LINE L1 -4867 1252 972 525 278 100 98 chr3 168525295 168525694 -49511464 - MLT1K LTR MaLR -188 400 1 3186 124 0 0 chr3 168525751 168526241 -49510917 - L1PA7 LINE L1 -1957 4189 3700 7692 108 29 3 chr3 168526242 168528172 -49508986 + L1PA7 LINE L1 4196 6152 -2 279 329 44 36 chr3 168528270 168528407 -49508751 - MLT1J2 LTR MaLR -59 391 254 322 43 21 0 chr3 168528422 168528469 -49508689 + MADE1 DNA Mariner 1 48 -32 254 252 131 9 chr3 168528547 168528654 -49508504 - MLT1J2 LTR MaLR -294 156 37 32 26 0 0 chr3 168528939 168528978 -49508180 + AT_rich Low_complexity Low_complexity 1 39 0 411 321 46 8 chr3 168531782 168531913 -49505245 + MIR SINE MIR 54 189 -73 500 198 31 0 chr3 168531998 168532094 -49505064 + LTR53 LTR ERVL 23 121 -398 1624 202 36 25 chr3 168532298 168532659 -49504499 - MLT1A1 LTR MaLR 0 365 1 1800 179 3 3 chr3 168532722 168533024 -49504134 + AluJb SINE Alu 1 302 -10 247 231 0 0 chr3 168533622 168533674 -49503484 - MIR3 SINE MIR 0 208 157 223 303 121 30 chr3 168534017 168534116 -49503042 + L2 LINE L2 3126 3233 -39 2334 177 24 9 chr3 168534225 168534678 -49502480 + MER65C LTR ERV1 1 460 -1 433 270 37 18 chr3 168536491 168536654 -49500504 - Charlie8 DNA MER1_type -2238 179 14 193 325 52 0 chr3 168536670 168536747 -49500411 + MIR3 SINE MIR 111 191 -17 284 286 219 0 chr3 168537376 168537495 -49499663 + L2 LINE L2 2613 2757 -557 552 256 10 9 chr3 168537539 168537708 -49499450 + MLT1H LTR MaLR 5 210 -339 2246 136 0 0 chr3 168537712 168538020 -49499138 + AluSx SINE Alu 5 312 0 1152 137 61 0 chr3 168538139 168538336 -49498822 + MER30 DNA MER1_type 1 209 -21 799 253 199 26 chr3 168538488 168538943 -49498215 + L2 LINE L2 2791 3309 -4 1766 184 15 3 chr3 168539431 168539773 -49497385 - L1MC1 LINE L1 0 6333 5988 398 340 31 46 chr3 168539996 168540255 -49496903 + L2 LINE L2 2435 2689 -625 2001 134 0 34 chr3 168540446 168540767 -49496391 - AluSg SINE Alu 0 310 1 23054 62 2 0 chr3 168540887 168543959 -49493199 + L1P LINE L1 11 3087 -3059 204 305 53 53 chr3 168546017 168546112 -49491046 + MIR3 SINE MIR 79 173 -35 213 198 6 0 chr3 168546240 168546288 -49490870 + L2 LINE L2 3216 3290 -8 323 299 96 12 chr3 168547174 168547341 -49489817 + MER20 DNA MER1_type 38 218 -1 2120 110 3 52 chr3 168547828 168548154 -49489004 - AluSx SINE Alu 0 312 3 207 0 0 0 chr3 168548161 168548184 -49488974 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 6079 95 11 13 chr3 168548186 168549383 -49487775 - L1PB1 LINE L1 -13 6138 4949 665 186 6 56 chr3 168549383 168549544 -49487614 - MER20 DNA MER1_type -65 154 2 481 266 196 6 chr3 168550582 168550740 -49486418 + MER5A DNA MER1_type 1 188 -1 1319 224 18 32 chr3 168551796 168552135 -49485023 - MLT1A2 LTR MaLR -7 367 34 261 253 13 0 chr3 168552763 168552838 -49484320 + T-rich Low_complexity Low_complexity 6 81 0 2267 146 0 3 chr3 168552838 168553207 -49483951 - L1PB1 LINE L1 -8 6143 5776 30 27 0 0 chr3 168553213 168553250 -49483908 + AT_rich Low_complexity Low_complexity 1 37 0 567 66 84 12 chr3 168553250 168553417 -49483741 + (TA)n Simple_repeat Simple_repeat 1 179 0 998 113 6 0 chr3 168553436 168553596 -49483562 - L1PB1 LINE L1 -363 5788 5628 * 13381 195 68 13 chr3 168553590 168559708 -49477450 - L1P5 LINE L1 -402 6465 6 815 174 108 82 chr3 168560271 168560450 -49476708 - L1MD3 LINE L1 -8 7987 7795 2257 114 0 3 chr3 168560450 168560758 -49476400 - AluSg SINE Alu -3 307 1 815 174 108 82 chr3 168560758 168560883 -49476275 - L1MD3 LINE L1 -200 7795 7675 2410 48 10 3 chr3 168561014 168561304 -49475854 - AluY SINE Alu -19 292 1 597 200 117 17 chr3 168561662 168561842 -49475316 + MLT1F1 LTR MaLR 318 515 -52 217 304 18 0 chr3 168561972 168562028 -49475130 - L2 LINE L2 -8 3264 3208 23 0 0 0 chr3 168562128 168562151 -49475007 + AT_rich Low_complexity Low_complexity 1 23 0 215 265 103 0 chr3 168562569 168562637 -49474521 + L2 LINE L2 3238 3312 -1 1398 101 0 26 chr3 168563754 168563943 -49473215 - AluSg SINE Alu -125 185 2 232 276 0 0 chr3 168564343 168564401 -49472757 - L2 LINE L2 -664 2650 2593 691 212 68 85 chr3 168565220 168565527 -49471631 - MER102a DNA MER1_type -1 329 28 400 347 17 6 chr3 168566135 168566308 -49470850 - MIR SINE MIR -6 256 82 775 347 44 25 chr3 168567692 168568286 -49468872 + L2 LINE L2 2708 3313 0 345 288 45 45 chr3 168568842 168568974 -49468184 - MIR SINE MIR -99 163 32 219 378 91 17 chr3 168569344 168569762 -49467396 + L2 LINE L2 2529 2977 -337 187 331 89 40 chr3 168570010 168570134 -49467024 + L2 LINE L2 3175 3304 -9 * 267 333 99 0 chr3 168570121 168570232 -49466926 - MIR SINE MIR -21 241 120 28 0 0 0 chr3 168571373 168571401 -49465757 + AT_rich Low_complexity Low_complexity 1 28 0 264 30 0 0 chr3 168572835 168572868 -49464290 + (CA)n Simple_repeat Simple_repeat 2 34 0 247 254 0 0 chr3 168573141 168573196 -49463962 + (CA)n Simple_repeat Simple_repeat 1 55 0 627 40 10 50 chr3 168573863 168573962 -49463196 + L1PA2 LINE L1 6061 6155 0 509 221 71 8 chr3 168574024 168574151 -49463007 + MIR SINE MIR 102 236 -26 537 199 15 15 chr3 168574436 168574567 -49462591 + L1MB8 LINE L1 6039 6169 -9 460 240 73 70 chr3 168576048 168576419 -49460739 - HAL1 LINE L1 -305 2202 1831 1382 273 126 58 chr3 168576875 168578298 -49458860 - HAL1 LINE L1 -305 2202 684 769 254 80 62 chr3 168578482 168578820 -49458338 - HAL1 LINE L1 -2162 345 2 335 331 24 0 chr3 168578821 168578945 -49458213 - L3 LINE CR1 -747 830 704 217 197 28 0 chr3 168579165 168579236 -49457922 + CT-rich Low_complexity Low_complexity 2 74 0 5820 123 3 3 chr3 168579331 168580204 -49456954 - L1PA14 LINE L1 -18 6143 5271 263 105 0 0 chr3 168580244 168580282 -49456876 - Alu SINE Alu -13 289 252 310 306 81 16 chr3 168584154 168584278 -49452880 + L2 LINE L2 3137 3268 -4 330 299 116 22 chr3 168584957 168585181 -49451977 + MIR SINE MIR 13 257 -5 184 261 0 0 chr3 168585402 168585448 -49451710 + MIR SINE MIR 33 78 -130 222 242 15 0 chr3 168588087 168588153 -49449005 + (TA)n Simple_repeat Simple_repeat 1 67 0 2191 93 0 4 chr3 168588252 168588532 -49448626 + AluSc SINE Alu 4 282 -27 409 215 319 14 chr3 168588717 168589131 -49448027 - L2 LINE L2 0 3313 2711 204 286 100 14 chr3 168589150 168589220 -49447938 - L2 LINE L2 -705 2609 2534 21 57 0 0 chr3 168589444 168589479 -49447679 + AT_rich Low_complexity Low_complexity 1 35 0 311 311 52 77 chr3 168589501 168589645 -49447513 - L1ME3 LINE L1 -278 5884 5738 2184 107 0 16 chr3 168589645 168589955 -49447203 - AluSc SINE Alu -4 305 1 311 311 52 77 chr3 168589955 168590267 -49446891 - L1ME3 LINE L1 -424 5738 5439 525 270 75 13 chr3 168590357 168590583 -49446575 - L1ME3 LINE L1 -824 5322 5083 420 252 108 23 chr3 168591235 168591449 -49445709 - L1ME3A LINE L1 -322 5831 5600 584 297 95 7 chr3 168591452 168591735 -49445423 - L1ME3A LINE L1 -600 5545 5238 597 287 77 8 chr3 168591759 168592111 -49445047 - L1ME3A LINE L1 -1022 5107 4732 2068 122 20 17 chr3 168592385 168592737 -49444421 - L1MA2 LINE L1 0 6304 5952 479 293 89 37 chr3 168592767 168593252 -49443906 - L1ME3A LINE L1 -2056 4073 3564 30 27 0 0 chr3 168593253 168593290 -49443868 + AT_rich Low_complexity Low_complexity 1 37 0 652 137 0 0 chr3 168593292 168593387 -49443771 - HY3 scRNA scRNA -6 95 1 308 325 78 58 chr3 168593826 168594134 -49443024 - L1ME3A LINE L1 -5794 325 12 264 111 0 0 chr3 168594680 168594725 -49442433 + (TG)n Simple_repeat Simple_repeat 1 45 0 2568 62 0 0 chr3 168595608 168595915 -49441243 + AluY SINE Alu 1 307 -4 443 271 85 8 chr3 168595961 168596090 -49441068 - MIR SINE MIR -74 188 50 641 316 68 38 chr3 168596744 168597213 -49439945 - L3 LINE CR1 -105 1472 990 2354 105 0 0 chr3 168597233 168597529 -49439629 + AluSc SINE Alu 1 296 -13 2226 283 22 29 chr3 168598519 168599273 -49437885 - L1MEc LINE L1 -5617 779 31 354 311 90 6 chr3 168601352 168601519 -49435639 - MER20 DNA MER1_type -1 218 38 212 198 6 0 chr3 168602404 168602452 -49434706 - L2 LINE L2 -8 3290 3216 4265 44 15 0 chr3 168604284 168604803 -49432355 + L1PA7 LINE L1 5617 6143 -11 1116 176 36 54 chr3 168605249 168605471 -49431687 - MER20 DNA MER1_type -1 218 1 230 159 0 0 chr3 168606519 168606563 -49430595 - LTR66 LTR ERVL -172 438 395 222 265 0 0 chr3 168606792 168606860 -49430298 + (TA)n Simple_repeat Simple_repeat 1 68 0 232 104 0 0 chr3 168606862 168606910 -49430248 + LTR66 LTR ERVL 397 444 -166 23 0 0 0 chr3 168606992 168607015 -49430143 + AT_rich Low_complexity Low_complexity 1 23 0 368 320 39 6 chr3 168608102 168608258 -49428900 + MIR SINE MIR 96 256 -6 235 330 43 97 chr3 168609116 168609301 -49427857 + MIR SINE MIR 15 189 -73 630 39 0 0 chr3 168609311 168609388 -49427770 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 7509 24 0 0 chr3 168613361 168614519 -49422639 - L1PA4 LINE L1 0 6155 4987 18239 38 3 0 chr3 168614519 168616771 -49420387 - L1PA4 LINE L1 -2415 3731 1474 22 0 0 0 chr3 168617273 168617295 -49419863 + GC_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 168617307 168617329 -49419829 + GC_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr3 168617538 168617563 -49419595 + GC_rich Low_complexity Low_complexity 1 25 0 360 0 0 0 chr3 168617584 168617624 -49419534 + (A)n Simple_repeat Simple_repeat 1 40 0 2012 164 100 8 chr3 168619017 168619407 -49417751 + MSTB LTR MaLR 1 426 0 7023 50 18 0 chr3 168619550 168620460 -49416698 - L1PA4 LINE L1 -5 6150 5237 17637 33 5 3 chr3 168620460 168622637 -49414521 + L1PA4 LINE L1 3064 5244 -902 405 266 45 40 chr3 168623208 168623385 -49413773 - MER5B DNA MER1_type 0 178 1 438 266 56 79 chr3 168623793 168624007 -49413151 + MER63A DNA MER1_type 2 210 0 2304 100 0 7 chr3 168624762 168625063 -49412095 + AluSx SINE Alu 1 299 -13 749 255 112 0 chr3 168625268 168625464 -49411694 + MIR SINE MIR 7 224 -38 259 358 80 7 chr3 168625530 168625667 -49411491 - MIR SINE MIR -96 166 20 5757 99 7 1 chr3 168625892 168627332 -49409826 - L1PA16 LINE L1 -9 6157 4697 25 0 0 0 chr3 168627332 168627357 -49409801 + AT_rich Low_complexity Low_complexity 1 25 0 5164 97 71 31 chr3 168627359 168628150 -49409008 - L1MA2 LINE L1 -9 6295 5466 2285 101 19 0 chr3 168628150 168628457 -49408701 + AluSp SINE Alu 1 313 0 5164 97 71 31 chr3 168628457 168628511 -49408647 - L1MA2 LINE L1 -838 5466 5416 3114 195 18 6 chr3 168628515 168629171 -49407987 - L1 LINE L1 -1884 4262 3599 2162 64 3 24 chr3 168629344 168629641 -49407517 + AluY SINE Alu 1 291 -20 183 42 0 0 chr3 168629644 168629668 -49407490 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 269 231 31 0 chr3 168629921 168629986 -49407172 + MER103 DNA DNA 75 141 -25 1704 194 11 0 chr3 168630179 168630289 -49406869 + AluJb SINE Alu 6 113 -202 195 100 0 0 chr3 168630289 168630319 -49406839 + (CAA)n Simple_repeat Simple_repeat 1 30 0 1704 194 11 0 chr3 168630319 168630515 -49406643 + AluJb SINE Alu 113 315 0 2523 41 0 44 chr3 168633763 168634081 -49403077 + AluY SINE Alu 1 304 -7 198 103 0 0 chr3 168634163 168634192 -49402966 + (CA)n Simple_repeat Simple_repeat 2 30 0 29 60 0 0 chr3 168634585 168634635 -49402523 + AT_rich Low_complexity Low_complexity 1 50 0 1480 117 25 4 chr3 168634982 168635222 -49401936 + L1MA3 LINE L1 6053 6297 -8 476 264 57 19 chr3 168635350 168635708 -49401450 - L1ME3A LINE L1 -31 6139 5719 492 313 45 6 chr3 168635747 168635926 -49401232 + MLT1E3 LTR MaLR 159 344 -280 280 278 68 23 chr3 168636036 168636212 -49400946 - L1ME3A LINE L1 -265 5905 5722 1882 216 37 22 chr3 168636251 168636710 -49400448 + MLT1E3 LTR MaLR 159 624 0 2134 138 0 0 chr3 168638534 168638839 -49398319 - AluSx SINE Alu -7 305 1 189 74 0 0 chr3 168639034 168639061 -49398097 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 2199 111 0 0 chr3 168639112 168639409 -49397749 + AluSg SINE Alu 1 297 -13 428 372 64 19 chr3 168639554 168639973 -49397185 - L2 LINE L2 -1887 1427 990 2147 211 30 16 chr3 168640178 168640676 -49396482 - MLT1D LTR MaLR 0 505 1 2349 64 3 13 chr3 168641567 168641865 -49395293 - AluSp SINE Alu -18 295 1 735 115 0 0 chr3 168642622 168642726 -49394432 - L1MC/D LINE L1 -534 5799 5696 * 2460 199 20 30 chr3 168642725 168643032 -49394126 + L1MC/D LINE L1 4736 5045 -1288 2300 117 0 0 chr3 168643032 168643339 -49393819 + AluSc SINE Alu 1 307 -2 2460 199 20 30 chr3 168643339 168644015 -49393143 + L1MC/D LINE L1 5045 5708 -625 21 0 0 0 chr3 168644019 168644040 -49393118 + AT_rich Low_complexity Low_complexity 1 21 0 2142 119 3 3 chr3 168644944 168645238 -49391920 + AluSc SINE Alu 1 294 -15 3073 137 10 12 chr3 168645755 168646253 -49390905 + LOR1a LTR ERV1 1 497 0 538 305 55 31 chr3 168646891 168647101 -49390057 - MIR SINE MIR 0 262 43 2414 141 6 3 chr3 168647101 168647464 -49389694 - THE1B LTR MaLR 0 364 1 538 305 55 31 chr3 168647464 168647509 -49389649 - MIR SINE MIR -219 43 1 323 274 38 9 chr3 168647971 168648077 -49389081 + LTR25 LTR ERV1 248 356 -438 225 300 25 25 chr3 168648101 168648181 -49388977 + MER61E LTR ERV1 111 190 -379 1050 164 33 0 chr3 168648259 168648442 -49388716 + MER61E LTR ERV1 341 529 -40 223 159 43 29 chr3 168648464 168648533 -49388625 + (TTATA)n Simple_repeat Simple_repeat 3 72 0 247 282 77 17 chr3 168648647 168648828 -49388330 + L1ME3A LINE L1 4628 4819 -1327 388 300 66 29 chr3 168648930 168649310 -49387848 + L1ME3A LINE L1 4963 5356 -790 551 215 28 0 chr3 168649427 168649534 -49387624 + AluJo SINE Alu 124 233 -79 953 185 6 0 chr3 168649610 168649767 -49387391 + FAM SINE Alu 1 158 -27 466 266 28 34 chr3 168649778 168649955 -49387203 + L1ME3A LINE L1 5477 5652 -510 305 200 0 118 chr3 168649986 168650096 -49387062 - L1MC4 LINE L1 -1332 6710 6614 304 321 34 55 chr3 168650101 168650338 -49386820 + L1ME3A LINE L1 5643 5874 -296 2107 219 71 12 chr3 168650536 168651016 -49386142 + MLT2B1 LTR ERVL 5 512 -8 483 225 71 6 chr3 168651696 168651878 -49385280 + MER20B DNA MER1_type 526 719 -64 2308 57 17 3 chr3 168652029 168652327 -49384831 - AluY SINE Alu -7 304 3 759 142 45 0 chr3 168652679 168652813 -49384345 - L1MA7 LINE L1 0 6291 6152 1417 199 138 50 chr3 168655117 168655574 -49381584 - LTR54B LTR ERV1 -1 497 1 282 337 204 6 chr3 168656034 168656206 -49380952 - MIR SINE MIR -11 251 46 1351 201 89 28 chr3 168656228 168656552 -49380606 + MER2 DNA MER2_type 1 344 0 668 266 31 103 chr3 168657259 168657609 -49379549 - MLT1I LTR MaLR -1 408 84 210 330 11 11 chr3 168657888 168657976 -49379182 - MIR SINE MIR -118 144 57 180 175 66 6 chr3 168659934 168660100 -49377058 + (TA)n Simple_repeat Simple_repeat 1 176 0 225 228 0 18 chr3 168660119 168660176 -49376982 + (TA)n Simple_repeat Simple_repeat 2 57 0 266 220 209 0 chr3 168660503 168660594 -49376564 + L1ME3A LINE L1 5962 6071 -99 356 234 117 14 chr3 168660787 168660932 -49376226 + L2 LINE L2 1549 1708 -1606 1234 229 121 3 chr3 168661028 168661333 -49375825 + MLT1A1 LTR MaLR 25 365 0 821 229 135 11 chr3 168661339 168661606 -49375552 + L2 LINE L2 1751 2050 -1264 24 32 0 0 chr3 168661817 168661848 -49375310 + AT_rich Low_complexity Low_complexity 1 31 0 197 314 86 9 chr3 168662079 168662184 -49374974 - L2 LINE L2 -14 3299 3187 568 276 26 73 chr3 168662525 168662717 -49374441 - MER63A DNA MER1_type -2 208 26 321 197 7 129 chr3 168662714 168662861 -49374297 + LTR37A LTR ERV1 298 426 0 * 1440 239 186 17 chr3 168663284 168663395 -49373763 + MLT2F LTR ERVL 54 145 -518 186 43 0 0 chr3 168663395 168663418 -49373740 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2149 103 3 0 chr3 168663421 168663703 -49373455 - AluSp SINE Alu -30 283 1 1440 239 186 17 chr3 168663703 168664109 -49373049 + MLT2F LTR ERVL 146 663 0 291 255 32 0 chr3 168665035 168665129 -49372029 + HAL1b LINE L1 610 706 -642 22 56 0 0 chr3 168665336 168665372 -49371786 + AT_rich Low_complexity Low_complexity 1 36 0 270 272 147 22 chr3 168665969 168666153 -49371005 + L1ME LINE L1 5378 5584 -537 911 200 58 97 chr3 168667422 168667802 -49369356 - L1ME3A LINE L1 -9 6161 5797 1449 206 67 6 chr3 168667815 168668131 -49369027 + MER58B DNA MER1_type 6 340 -1 1003 229 84 63 chr3 168668131 168668498 -49368660 - L1ME3A LINE L1 -373 5797 5423 553 208 62 62 chr3 168668511 168668785 -49368373 - L1ME3A LINE L1 -1727 4419 4146 282 160 0 0 chr3 168668786 168668836 -49368322 + CT-rich Low_complexity Low_complexity 1 50 0 235 114 0 0 chr3 168668837 168668872 -49368286 + (TC)n Simple_repeat Simple_repeat 2 36 0 1032 255 19 73 chr3 168668878 168669305 -49367853 - L1ME3A LINE L1 -1996 4150 3747 1621 247 15 36 chr3 168669305 168669775 -49367383 - LTR40b LTR ERVL 0 462 3 629 231 89 0 chr3 168669835 168670004 -49367154 - HERVL40 LTR ERVL -70 5460 5277 3121 141 11 2 chr3 168670004 168670465 -49366693 - MER1A DNA MER1_type 0 529 65 357 231 0 26 chr3 168670646 168670724 -49366434 - HERVL40 LTR ERVL -239 2798 2723 1278 198 106 7 chr3 168671073 168671356 -49365802 - AluY SINE Alu 0 311 1 482 310 47 8 chr3 168671778 168672025 -49365133 - HERVL40 LTR ERVL -704 4660 2202 630 229 24 48 chr3 168672136 168672169 -49364989 - LTR40a LTR ERVL -357 162 130 2100 69 14 38 chr3 168672169 168672518 -49364640 - AluY SINE Alu 0 342 1 630 229 24 48 chr3 168672518 168672649 -49364509 - LTR40a LTR ERVL -389 130 1 2419 146 21 47 chr3 168672687 168673159 -49363999 - MER65C LTR ERV1 0 461 2 594 254 30 0 chr3 168673162 168673331 -49363827 - L1ME3A LINE L1 -2440 3706 3533 282 296 80 13 chr3 168673878 168674104 -49363054 + L1ME4a LINE L1 5584 5824 -297 226 286 100 7 chr3 168674182 168674322 -49362836 + L1ME4a LINE L1 5964 6116 -5 487 212 17 8 chr3 168674689 168674807 -49362351 - L1MD1 LINE L1 -20 6222 6104 1876 221 0 12 chr3 168674811 168675237 -49361921 - L1P LINE L1 -809 5337 4917 * 3533 199 10 19 chr3 168675233 168676027 -49361131 + L1P LINE L1 4136 4922 -1224 371 183 37 0 chr3 168676030 168676112 -49361046 - L1MD1 LINE L1 -279 5963 5879 4911 248 46 28 chr3 168676259 168676605 -49360553 - L1M4 LINE L1 -1209 4937 4599 2240 119 0 3 chr3 168676605 168676917 -49360241 - AluY SINE Alu 0 311 1 4911 248 46 28 chr3 168676917 168678149 -49359009 - L1M4 LINE L1 -1547 4599 3324 1884 174 30 6 chr3 168678149 168678482 -49358676 - MER2 DNA MER2_type 0 344 4 4911 248 46 28 chr3 168678482 168678560 -49358598 - L1M4 LINE L1 -2822 3324 3249 208 368 0 15 chr3 168680139 168680207 -49356951 - L3 LINE CR1 -13 1564 1498 1076 255 24 8 chr3 168680526 168680781 -49356377 - MER90 LTR ERV1 0 614 356 243 364 18 18 chr3 168681076 168681186 -49355972 - MER5A DNA MER1_type -26 163 54 1810 138 0 44 chr3 168681249 168681546 -49355612 + AluSx SINE Alu 1 284 -28 389 324 101 14 chr3 168681933 168682220 -49354938 - L1ME3A LINE L1 -295 5875 5564 276 30 0 0 chr3 168682232 168682265 -49354893 + (TG)n Simple_repeat Simple_repeat 2 34 0 302 169 15 0 chr3 168682363 168682428 -49354730 + (TA)n Simple_repeat Simple_repeat 1 66 0 320 280 18 45 chr3 168682539 168682753 -49354405 - L1ME3A LINE L1 -739 5432 5255 228 67 0 0 chr3 168684084 168684114 -49353044 + (CA)n Simple_repeat Simple_repeat 1 30 0 564 268 60 33 chr3 168684528 168684711 -49352447 - MIR SINE MIR -74 188 1 575 335 83 0 chr3 168686105 168686347 -49350811 - MIR SINE MIR 0 262 1 486 225 22 0 chr3 168686947 168687085 -49350073 - Charlie2 DNA MER1_type -32 2830 2690 1666 260 148 17 chr3 168687098 168687889 -49349269 + Zaphod DNA AcHobo 2 990 -3041 998 240 68 25 chr3 168687888 168688020 -49349138 + Zaphod DNA AcHobo 3596 3721 -310 * 2561 53 0 0 chr3 168688020 168688324 -49348834 - AluY SINE Alu -7 304 1 998 240 68 25 chr3 168688324 168688587 -49348571 + Zaphod DNA AcHobo 3721 4008 -23 251 213 0 0 chr3 168688610 168688657 -49348501 - Charlie2 DNA MER1_type -186 2676 2630 394 214 11 0 chr3 168688696 168688785 -49348373 - L1MA8 LINE L1 -7 6284 6195 657 180 134 57 chr3 168688839 168689161 -49347997 - Charlie2 DNA MER1_type -292 2570 2110 2440 67 0 0 chr3 168689161 168689458 -49347700 - AluY SINE Alu -14 297 1 657 180 134 57 chr3 168689458 168689506 -49347652 - Charlie2 DNA MER1_type -752 2110 2067 1254 276 80 36 chr3 168689596 168690300 -49346858 + L2 LINE L2 2574 3304 -9 876 222 118 83 chr3 168690303 168690641 -49346517 - MLT1E3 LTR MaLR 0 624 289 493 257 0 74 chr3 168690664 168690812 -49346346 - MLT1E3 LTR MaLR -517 137 1 22 0 0 0 chr3 168690819 168690841 -49346317 + AT_rich Low_complexity Low_complexity 1 22 0 661 267 183 11 chr3 168690906 168691168 -49345990 - Charlie2 DNA MER1_type -2474 308 2 949 176 58 29 chr3 168691368 168691573 -49345585 + AluJo SINE Alu 16 226 -86 22 56 0 0 chr3 168691722 168691758 -49345400 + AT_rich Low_complexity Low_complexity 1 36 0 222 265 147 0 chr3 168691873 168691941 -49345217 + L2 LINE L2 3225 3302 -11 445 309 22 45 chr3 168692577 168692755 -49344403 + MER5B DNA MER1_type 1 174 -4 233 367 13 0 chr3 168692764 168692843 -49344315 + L2 LINE L2 3153 3232 -40 26 30 0 0 chr3 168692989 168693022 -49344136 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr3 168693081 168693104 -49344054 + AT_rich Low_complexity Low_complexity 1 23 0 272 189 151 38 chr3 168693350 168693456 -49343702 - MLT1L LTR MaLR -9 606 489 236 240 60 80 chr3 168694016 168694116 -49343042 - L2 LINE L2 -520 2794 2697 417 342 104 0 chr3 168694210 168694403 -49342755 - L2 LINE L2 -665 2649 2437 276 326 41 0 chr3 168694482 168694580 -49342578 + U6 snRNA snRNA 6 107 0 22 0 0 0 chr3 168694718 168694740 -49342418 + AT_rich Low_complexity Low_complexity 1 22 0 183 163 209 0 chr3 168695159 168695202 -49341956 - L2 LINE L2 -972 2342 2291 510 214 0 92 chr3 168696514 168696645 -49340513 - L2 LINE L2 0 3313 3195 1430 253 107 26 chr3 168698344 168698851 -49338307 - MER77 LTR ERV1 -4 601 54 2559 227 6 31 chr3 168699116 168699449 -49337709 - MER68 LTR ERV1 0 562 247 803 279 114 18 chr3 168699449 168699843 -49337315 + MER57B LTR ERV1 3 434 0 2559 227 6 31 chr3 168699843 168700050 -49337108 - MER68 LTR ERV1 -315 247 36 1106 106 6 6 chr3 168701001 168701162 -49335996 + L1P3 LINE L1 2 162 -5713 6253 67 23 6 chr3 168701164 168702876 -49334282 + L1PA8A LINE L1 4386 6130 -1 205 383 42 18 chr3 168702922 168703089 -49334069 - L2 LINE L2 -927 2387 2217 2592 48 0 0 chr3 168703112 168703423 -49333735 - AluY SINE Alu 0 311 1 249 98 0 0 chr3 168703694 168703735 -49333423 + (CA)n Simple_repeat Simple_repeat 2 42 0 539 265 99 18 chr3 168704669 168704892 -49332266 + L2 LINE L2 3073 3313 0 351 301 30 36 chr3 168706302 168706468 -49330690 + MLT1J LTR MaLR 330 494 -17 672 274 67 75 chr3 168710827 168711349 -49325809 + HAL1b LINE L1 67 584 -764 305 276 31 63 chr3 168711366 168711493 -49325665 + HAL1b LINE L1 659 781 -567 364 277 6 108 chr3 168712155 168712321 -49324837 - MIR SINE MIR 0 262 114 209 379 86 0 chr3 168712360 168712476 -49324682 + MIR SINE MIR 31 156 -106 186 43 0 0 chr3 168712594 168712617 -49324541 + (TTA)n Simple_repeat Simple_repeat 1 23 0 29 28 0 0 chr3 168713986 168714022 -49323136 + AT_rich Low_complexity Low_complexity 1 36 0 321 68 0 0 chr3 168715251 168715295 -49321863 + (CA)n Simple_repeat Simple_repeat 1 44 0 23 0 0 0 chr3 168715355 168715378 -49321780 + AT_rich Low_complexity Low_complexity 1 23 0 2270 94 3 0 chr3 168715381 168715680 -49321478 + AluSq SINE Alu 1 300 -13 1011 156 0 0 chr3 168715680 168715859 -49321299 + (TA)n Simple_repeat Simple_repeat 2 180 0 1856 144 11 3 chr3 168717614 168717898 -49319260 + AluSx SINE Alu 1 286 -26 1729 122 110 23 chr3 168718223 168718568 -49318590 + THE1C LTR MaLR 1 375 0 40 21 0 0 chr3 168718568 168718615 -49318543 + AT_rich Low_complexity Low_complexity 1 47 0 483 156 13 0 chr3 168718660 168718737 -49318421 - Tigger5 DNA MER2_type 0 2323 2246 385 232 37 0 chr3 168718758 168718840 -49318318 - Tigger5 DNA MER2_type -2238 85 1 882 293 44 29 chr3 168718872 168719516 -49317642 - L1ME LINE L1 -4580 1681 993 2298 105 3 3 chr3 168719846 168720152 -49317006 + AluSx SINE Alu 1 306 -6 200 167 0 0 chr3 168720993 168721023 -49316135 + polypurine Low_complexity Low_complexity 1 30 0 2560 45 0 13 chr3 168722179 168722492 -49314666 - AluY SINE Alu -2 309 1 341 289 65 74 chr3 168722646 168722982 -49314176 + L1MEd LINE L1 97 429 -5776 1965 177 15 31 chr3 168722995 168723384 -49313774 + MLT1B LTR MaLR 3 385 -5 466 236 79 45 chr3 168723387 168723565 -49313593 + L1MEd LINE L1 428 611 -5594 349 336 50 7 chr3 168723597 168723737 -49313421 - L2 LINE L2 -241 3072 2927 366 301 91 23 chr3 168724071 168724290 -49312868 + L1MEd LINE L1 1225 1458 -4938 1792 94 4 0 chr3 168724551 168724784 -49312374 + AluY SINE Alu 78 311 0 183 129 0 0 chr3 168726012 168726043 -49311115 + (TCTA)n Simple_repeat Simple_repeat 1 31 0 1684 65 4 0 chr3 168726291 168726523 -49310635 + L1P4 LINE L1 5355 5587 -574 37 23 0 0 chr3 168727248 168727292 -49309866 + AT_rich Low_complexity Low_complexity 1 44 0 281 167 0 0 chr3 168727413 168727461 -49309697 - L1ME LINE L1 -5658 412 365 227 91 0 0 chr3 168727465 168727498 -49309660 + THE1C LTR MaLR 2 34 -394 547 163 0 0 chr3 168727668 168727766 -49309392 - L1PA14 LINE L1 -10 6151 6054 1649 147 52 38 chr3 168727766 168728112 -49309046 + THE1C LTR MaLR 25 375 0 429 251 11 84 chr3 168728310 168728501 -49308657 - L1ME LINE L1 -5888 182 6 316 259 12 0 chr3 168729032 168729113 -49308045 - LTR33 LTR ERVL -118 403 322 729 251 10 50 chr3 168729190 168729389 -49307769 - LTR33 LTR ERVL -319 202 12 3059 54 3 5 chr3 168730077 168730467 -49306691 + L1PA4 LINE L1 5767 6155 0 840 313 82 52 chr3 168730662 168731259 -49305899 + L1MEd LINE L1 623 1237 -4882 873 310 52 29 chr3 168731272 168731749 -49305409 + L1M2 LINE L1 13 500 -6349 420 403 117 8 chr3 168731808 168732056 -49305102 + L1M2 LINE L1 682 956 -5893 225 369 20 36 chr3 168732488 168732740 -49304418 + L1PA15-16 LINE L1 1279 1526 -5323 285 286 11 0 chr3 168732774 168732865 -49304293 + L1PA15-16 LINE L1 1472 1563 -5286 * 6856 218 64 27 chr3 168732854 168733424 -49303734 + L1PA15-16 LINE L1 1339 1886 -4963 2080 112 4 0 chr3 168733424 168733702 -49303456 - AluSg SINE Alu -31 279 1 6856 218 64 27 chr3 168733702 168735494 -49301664 + L1PA15-16 LINE L1 1886 3912 -2937 1996 142 0 22 chr3 168735494 168735811 -49301347 + AluSx SINE Alu 1 310 -2 6856 218 64 27 chr3 168735811 168736953 -49300205 + L1PA15-16 LINE L1 3912 5010 -1839 23 0 0 0 chr3 168737107 168737130 -49300028 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr3 168737257 168737288 -49299870 + AT_rich Low_complexity Low_complexity 1 31 0 297 279 0 9 chr3 168738408 168738519 -49298639 + (TA)n Simple_repeat Simple_repeat 2 111 0 284 197 0 14 chr3 168738567 168738638 -49298520 + (TA)n Simple_repeat Simple_repeat 2 71 0 2082 100 7 0 chr3 168738641 168738955 -49298203 - AluSx SINE Alu 0 316 1 1450 189 3 51 chr3 168738980 168739166 -49297992 - AluJo SINE Alu -15 297 130 2279 65 0 26 chr3 168739166 168739498 -49297660 + AluY SINE Alu 3 311 0 1450 189 3 51 chr3 168739498 168739623 -49297535 - AluJo SINE Alu -182 130 1 4085 194 65 10 chr3 168739631 168740844 -49296314 - L1MD1 LINE L1 -2 6240 4966 382 349 41 12 chr3 168740865 168741037 -49296121 - L3 LINE CR1 -1216 361 185 416 309 65 6 chr3 168742056 168742224 -49294934 - MIR SINE MIR -74 188 11 498 259 45 40 chr3 168742902 168743126 -49294032 + LTR41 LTR ERVL 34 258 -515 506 250 19 56 chr3 168743500 168743716 -49293442 + LTR41 LTR ERVL 463 670 -103 646 188 0 30 chr3 168743737 168743870 -49293288 - MLT1A2 LTR MaLR -242 132 4 28 29 0 0 chr3 168744364 168744399 -49292759 + AT_rich Low_complexity Low_complexity 1 35 0 270 0 0 0 chr3 168744483 168744513 -49292645 + (TG)n Simple_repeat Simple_repeat 2 31 0 254 352 40 8 chr3 168744612 168744737 -49292421 + MIR SINE MIR 59 187 -75 844 254 221 36 chr3 168744748 168745363 -49291795 + HAL1 LINE L1 1644 2372 -135 480 233 7 48 chr3 168745358 168745504 -49291654 - HAL1 LINE L1 -37 2470 2331 * 706 297 36 32 chr3 168745926 168746175 -49290983 - MIR SINE MIR -1 261 12 382 82 82 0 chr3 168748279 168748340 -49288818 + MADE1 DNA Mariner 1 66 -14 1404 268 15 69 chr3 168748345 168748953 -49288205 - MLT2F LTR ERVL -68 595 21 1695 261 115 20 chr3 168749221 168750153 -49287005 - L2 LINE L2 -1 3312 2295 297 135 0 0 chr3 168751213 168751265 -49285893 + (TC)n Simple_repeat Simple_repeat 2 53 0 309 51 0 0 chr3 168751265 168751304 -49285854 + (CA)n Simple_repeat Simple_repeat 1 39 0 2427 89 3 0 chr3 168751330 168751634 -49285524 - AluSx SINE Alu -7 305 1 247 160 149 11 chr3 168752191 168752285 -49284873 + L1MC5 LINE L1 7830 7936 -25 395 256 178 17 chr3 168752431 168752611 -49284547 - MIR SINE MIR -6 256 48 1907 122 62 0 chr3 168752633 168752921 -49284237 - AluSx SINE Alu -6 306 1 181 336 117 15 chr3 168753178 168753315 -49283843 + L2 LINE L2 2933 3083 -189 243 88 0 0 chr3 168753413 168753447 -49283711 + (TG)n Simple_repeat Simple_repeat 2 35 0 351 342 156 29 chr3 168753814 168754437 -49282721 + L2 LINE L2 1818 2519 -795 2558 87 32 0 chr3 168754513 168754883 -49282275 - L1PA10 LINE L1 -2 6166 5785 205 287 115 41 chr3 168754979 168755101 -49282057 + L2 LINE L2 2621 2751 -563 867 261 117 45 chr3 168755588 168756014 -49281144 - MLT1H LTR MaLR 0 549 93 505 256 62 8 chr3 168757007 168757136 -49280022 - L2 LINE L2 0 3313 3178 2142 147 126 5 chr3 168757303 168757685 -49279473 + MSTA LTR MaLR 1 428 0 7345 36 3 0 chr3 168757920 168758939 -49278219 + L1PA5 LINE L1 5136 6158 0 821 236 77 7 chr3 168759063 168759414 -49277744 + LTR52 LTR ERVL 11 420 -1 27 0 0 0 chr3 168760291 168760318 -49276840 + AT_rich Low_complexity Low_complexity 1 27 0 42337 37 1 2 chr3 168760541 168766693 -49270465 + L1PA3 LINE L1 8 6152 -3 210 320 31 31 chr3 168767457 168767554 -49269604 - L2 LINE L2 -3 3310 3214 1085 314 199 24 chr3 168767698 168767909 -49269249 + L2 LINE L2 1482 1655 -1658 423 38 0 0 chr3 168767909 168767962 -49269196 + (CA)n Simple_repeat Simple_repeat 2 54 0 1085 314 199 24 chr3 168767962 168769076 -49268082 + L2 LINE L2 1655 3030 -283 424 233 226 0 chr3 168769088 168769221 -49267937 + MIR SINE MIR 89 251 -11 237 315 65 28 chr3 168769394 168769502 -49267656 + L2 LINE L2 3184 3295 -18 1452 206 82 58 chr3 168769786 168770238 -49266920 + MLT1C LTR MaLR 5 467 0 327 25 0 0 chr3 168771135 168771175 -49265983 + (CA)n Simple_repeat Simple_repeat 2 41 0 22 35 0 0 chr3 168771777 168771806 -49265352 + AT_rich Low_complexity Low_complexity 1 29 0 26 82 0 0 chr3 168771881 168771942 -49265216 + AT_rich Low_complexity Low_complexity 1 61 0 372 275 156 12 chr3 168772014 168772174 -49264984 - MIR SINE MIR 0 262 80 268 192 115 51 chr3 168772299 168772377 -49264781 - MER63 DNA MER1_type 0 1061 979 432 180 66 57 chr3 168772380 168772502 -49264656 - MER63 DNA MER1_type -87 749 1 28 29 0 0 chr3 168773625 168773660 -49263498 + AT_rich Low_complexity Low_complexity 1 35 0 514 195 35 0 chr3 168773663 168773776 -49263382 - L1MA3 LINE L1 0 6305 6189 7650 259 66 32 chr3 168773833 168775590 -49261568 + L1ME2 LINE L1 81 1777 -4456 2250 95 17 0 chr3 168775590 168775884 -49261274 + AluSc SINE Alu 1 299 -10 7650 259 66 32 chr3 168775884 168777928 -49259230 + L1ME2 LINE L1 1777 3750 -2483 2204 90 0 10 chr3 168777928 168778216 -49258942 - AluSq SINE Alu -7 306 22 7650 259 66 32 chr3 168778216 168779862 -49257296 + L1ME2 LINE L1 3750 5339 -894 2478 139 54 27 chr3 168779862 168780307 -49256851 + MSTB2 LTR MaLR 1 457 0 7650 259 66 32 chr3 168780307 168780816 -49256342 + L1ME2 LINE L1 5339 6189 -44 2120 108 3 3 chr3 168780816 168781113 -49256045 + AluY SINE Alu 1 297 -14 7650 259 66 32 chr3 168781113 168781151 -49256007 + L1ME2 LINE L1 6189 6224 -9 214 170 94 19 chr3 168781388 168781441 -49255717 - L2 LINE L2 -2 3311 3255 192 225 25 0 chr3 168781450 168781490 -49255668 - L2 LINE L2 -16 3297 3257 318 343 86 34 chr3 168781516 168781691 -49255467 + MIR SINE MIR 8 191 -71 580 350 142 31 chr3 168781967 168782728 -49254430 - L2 LINE L2 -467 2847 2003 272 329 75 33 chr3 168782851 168783091 -49254067 - L2 LINE L2 -493 2821 2572 374 285 108 16 chr3 168783427 168783613 -49253545 + MER110 LTR ERV1 264 466 -25 2134 154 104 141 chr3 168783777 168784594 -49252564 + LTR48 LTR ERV1 1 787 0 3908 171 19 7 chr3 168785267 168785967 -49251191 + MER50 LTR ERV1 4 711 -23 272 198 0 94 chr3 168785997 168786093 -49251065 + L1ME4a LINE L1 5936 6022 -99 785 223 51 0 chr3 168786316 168786491 -49250667 - LTR48B LTR ERV1 0 644 461 2090 149 41 44 chr3 168786494 168787022 -49250136 - MLT2A2 LTR ERVL -4 550 20 16443 80 26 7 chr3 168787077 168789325 -49247833 + L1P LINE L1 2 2293 -3853 8150 194 33 48 chr3 168789330 168792712 -49244446 - HERVH LTR ERV1 -3622 2987 1 1251 173 76 104 chr3 168792712 168793175 -49243983 - LTR7 LTR ERV1 0 450 1 2815 6 0 13 chr3 168795568 168795881 -49241277 + AluYb8 SINE Alu 1 309 -9 469 225 36 65 chr3 168796002 168796100 -49241058 + MIR SINE MIR 61 155 -107 2491 122 78 0 chr3 168796100 168796495 -49240663 - MSTA LTR MaLR 0 428 3 469 225 36 65 chr3 168796495 168796534 -49240624 + MIR SINE MIR 155 194 -68 273 118 0 0 chr3 168797060 168797111 -49240047 + (CA)n Simple_repeat Simple_repeat 2 52 0 787 223 245 3 chr3 168797238 168797467 -49239691 + Charlie4a DNA MER1_type 33 205 -1756 2428 160 11 39 chr3 168797467 168797905 -49239253 + MSTB LTR MaLR 1 426 0 787 223 245 3 chr3 168797905 168797993 -49239165 + Charlie4a DNA MER1_type 205 427 -81 1133 251 108 75 chr3 168799152 168799659 -49237499 + MER77 LTR ERV1 54 577 -28 397 244 37 66 chr3 168799666 168799875 -49237283 + MER21B LTR ERV1 513 771 -6 295 291 128 20 chr3 168800443 168800591 -49236567 - MIR SINE MIR -70 192 29 1662 97 22 11 chr3 168800728 168800995 -49236163 - L1MA1 LINE L1 0 6302 6033 2343 95 0 3 chr3 168803718 168804024 -49233134 + AluSc SINE Alu 1 305 -4 663 217 62 12 chr3 168804062 168804223 -49232935 + MLT1A1 LTR MaLR 4 172 -193 1500 204 37 28 chr3 168804384 168804736 -49232422 + MLT1A1 LTR MaLR 11 365 0 616 255 67 90 chr3 168804736 168805163 -49231995 + MLT1L LTR MaLR 158 574 -41 5915 108 25 2 chr3 168805364 168806503 -49230655 - L1PA15 LINE L1 0 6165 5002 498 199 149 21 chr3 168806766 168806907 -49230251 + MER103 DNA DNA 7 165 -1 310 324 15 59 chr3 168808889 168809093 -49228065 - MIR3 SINE MIR -5 203 9 2389 63 0 10 chr3 168810088 168810388 -49226770 + AluY SINE Alu 1 297 -14 259 277 75 32 chr3 168810592 168810686 -49226472 + L3 LINE CR1 948 1045 -532 466 219 178 25 chr3 168810694 168810936 -49226222 + L1MC4 LINE L1 7090 7368 -674 211 170 0 43 chr3 168811068 168811115 -49226043 + GA-rich Low_complexity Low_complexity 4 48 0 273 109 0 0 chr3 168811115 168811161 -49225997 + (GGA)n Simple_repeat Simple_repeat 3 48 0 580 342 34 0 chr3 168812365 168812599 -49224559 - MIR SINE MIR -17 245 4 260 177 0 13 chr3 168813274 168813353 -49223805 + (TA)n Simple_repeat Simple_repeat 1 78 0 22 35 0 0 chr3 168813449 168813478 -49223680 + AT_rich Low_complexity Low_complexity 1 29 0 255 61 0 0 chr3 168813619 168813652 -49223506 + (CA)n Simple_repeat Simple_repeat 2 34 0 216 235 163 20 chr3 168813780 168813878 -49223280 - MIR SINE MIR -74 188 77 234 0 0 0 chr3 168813908 168813934 -49223224 + (CAA)n Simple_repeat Simple_repeat 2 27 0 797 222 97 39 chr3 168813968 168814175 -49222983 - MIR SINE MIR -29 233 15 237 338 0 0 chr3 168815177 168815248 -49221910 - MIR SINE MIR -118 144 74 427 158 10 0 chr3 168815267 168815368 -49221790 - Tigger3(Golem) DNA MER2_type -561 2468 2367 273 254 51 0 chr3 168815372 168815431 -49221727 - Tigger3(Golem) DNA MER2_type -2967 62 1 180 125 0 0 chr3 168815827 168815859 -49221299 + (A)n Simple_repeat Simple_repeat 1 32 0 592 201 7 65 chr3 168816064 168816203 -49220955 + FLAM_A SINE Alu 1 131 -2 487 279 18 35 chr3 168816400 168816584 -49220574 - MER5A DNA MER1_type -8 170 1 292 242 15 0 chr3 168816593 168816659 -49220499 + MER5B DNA MER1_type 9 75 -103 26 30 0 0 chr3 168816935 168816968 -49220190 + AT_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chr3 168817688 168817718 -49219440 + AT_rich Low_complexity Low_complexity 1 30 0 340 240 136 32 chr3 168818084 168818209 -49218949 + L2 LINE L2 3176 3313 0 222 37 0 0 chr3 168818269 168818296 -49218862 + (TA)n Simple_repeat Simple_repeat 1 27 0 744 269 94 7 chr3 168818391 168818700 -49218458 + HAL1 LINE L1 2077 2412 -95 198 150 0 0 chr3 168818701 168818741 -49218417 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 754 226 29 137 chr3 168818778 168819107 -49218051 + MLT1B LTR MaLR 102 378 0 894 282 108 27 chr3 168819923 168820292 -49216866 + LTR16C LTR ERVL 39 437 -54 200 299 144 10 chr3 168820401 168820498 -49216660 + L2 LINE L2 2807 2916 -398 1761 194 102 6 chr3 168820594 168820955 -49216203 + MSTD LTR MaLR 1 396 0 1982 147 3 0 chr3 168821364 168821664 -49215494 + AluSx SINE Alu 1 301 -11 222 118 0 0 chr3 168821664 168821698 -49215460 + (GGAA)n Simple_repeat Simple_repeat 1 34 0 1220 179 67 91 chr3 168821868 168822242 -49214916 + MLT1A1 LTR MaLR 1 365 0 2106 135 34 0 chr3 168822262 168822617 -49214541 - L1MA9 LINE L1 -4 6308 5942 2426 87 0 0 chr3 168822876 168823186 -49213972 - AluY SINE Alu -1 310 1 380 370 54 14 chr3 168823220 168823588 -49213570 - L1MC/D LINE L1 -1989 5819 5437 27 0 0 0 chr3 168823699 168823726 -49213432 + AT_rich Low_complexity Low_complexity 1 27 0 270 0 0 0 chr3 168823849 168823879 -49213279 + (CA)n Simple_repeat Simple_repeat 2 31 0 1442 176 13 59 chr3 168823901 168824207 -49212951 - AluJo SINE Alu -10 292 1 660 134 0 0 chr3 168825214 168825333 -49211825 + L1MA9 LINE L1 6194 6312 0 21 0 0 0 chr3 168825777 168825798 -49211360 + AT_rich Low_complexity Low_complexity 1 21 0 1269 177 28 25 chr3 168826032 168826315 -49210843 + L1MA7 LINE L1 6003 6286 -5 346 312 11 0 chr3 168827640 168827733 -49209425 + Charlie1 DNA MER1_type 1 94 -2667 683 204 21 52 chr3 168827867 168828058 -49209100 + Charlie1 DNA MER1_type 1493 1677 -1084 17266 170 46 6 chr3 168828071 168831627 -49205531 + L1MA2 LINE L1 14 3289 -4276 9507 77 5 3 chr3 168831634 168831874 -49205284 - L1PA7 LINE L1 -13 6141 5903 2429 93 0 0 chr3 168831874 168832184 -49204974 - AluY SINE Alu -1 310 1 9507 77 5 3 chr3 168832184 168834016 -49203142 - L1PA7 LINE L1 -251 5903 4068 264 26 0 0 chr3 168834034 168834073 -49203085 - AluY SINE Alu 0 301 263 14787 175 31 11 chr3 168834075 168837176 -49199982 + L1MA2 LINE L1 3576 6789 -934 2163 119 3 0 chr3 168837176 168837469 -49199689 - AluSq SINE Alu -19 294 1 14787 175 31 11 chr3 168837469 168838299 -49198859 + L1MA2 LINE L1 6789 7601 -122 6477 48 146 67 chr3 168838299 168839378 -49197780 - MER11A LTR ERVK 0 1266 6 798 158 0 0 chr3 168839378 168839511 -49197647 + L1MA2 LINE L1 7591 7723 0 24 32 0 0 chr3 168839511 168839542 -49197616 + AT_rich Low_complexity Low_complexity 1 31 0 3687 204 42 45 chr3 168839548 168839994 -49197164 + Charlie1 DNA MER1_type 1665 2111 -650 5422 108 17 0 chr3 168839994 168840999 -49196159 - L1PA13 LINE L1 0 6163 5111 3687 204 42 45 chr3 168840999 168841652 -49195506 + Charlie1 DNA MER1_type 2111 2760 -1 446 328 91 12 chr3 168841692 168841933 -49195225 - MLT1J LTR MaLR -244 267 8 3393 136 10 43 chr3 168841954 168842552 -49194606 + L1MA9 LINE L1 5399 5976 -336 3021 233 45 50 chr3 168842562 168844213 -49192945 + L1ME1 LINE L1 4341 6000 -334 182 37 37 0 chr3 168844213 168844240 -49192918 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 631 183 36 0 chr3 168844240 168844377 -49192781 + L1MA9 LINE L1 6166 6307 -5 3021 233 45 50 chr3 168844377 168844567 -49192591 + L1ME1 LINE L1 5998 6313 -21 479 191 0 0 chr3 168845013 168845097 -49192061 - Tigger7 DNA MER2_type -4 2487 2404 2572 153 120 9 chr3 168845100 168845551 -49191607 - Tigger7 DNA MER2_type -1890 597 97 22 0 0 0 chr3 168845615 168845637 -49191521 + AT_rich Low_complexity Low_complexity 1 22 0 474 215 0 0 chr3 168846111 168846190 -49190968 + Tigger7 DNA MER2_type 1 79 -2408 3258 182 130 62 chr3 168846190 168847175 -49189983 - L1MC3 LINE L1 -14 7771 6720 23 0 0 0 chr3 168847690 168847713 -49189445 + AT_rich Low_complexity Low_complexity 1 23 0 2437 154 42 0 chr3 168848566 168848975 -49188183 + MSTC LTR MaLR 2 427 -1 431 359 18 12 chr3 168849907 168850077 -49187081 - MIR3 SINE MIR -21 187 17 213 336 95 35 chr3 168850452 168850568 -49186590 - L3b LINE CR1 -11 1572 1450 471 275 180 0 chr3 168850620 168850809 -49186349 + MIR SINE MIR 34 256 -6 3193 141 32 55 chr3 168851417 168852068 -49185090 + L1MB7 LINE L1 5529 6164 -20 360 0 0 0 chr3 168853019 168853059 -49184099 + (TG)n Simple_repeat Simple_repeat 2 41 0 655 315 32 19 chr3 168853286 168853502 -49183656 - MIR SINE MIR -39 223 5 251 190 0 51 chr3 168853711 168853754 -49183404 + (TATATG)n Simple_repeat Simple_repeat 4 43 -35 198 0 0 0 chr3 168853754 168853776 -49183382 + (GA)n Simple_repeat Simple_repeat 2 23 0 251 190 0 51 chr3 168853776 168853811 -49183347 + (TATATG)n Simple_repeat Simple_repeat 43 78 0 387 0 0 0 chr3 168853811 168853854 -49183304 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 1443 239 30 15 chr3 168853989 168854383 -49182775 + MER93a LTR ERV1 3 402 0 295 242 192 0 chr3 168854864 168854984 -49182174 + MIR SINE MIR 4 146 -116 705 253 144 5 chr3 168855289 168855483 -49181675 + MIR SINE MIR 11 231 -31 25 0 0 0 chr3 168857196 168857221 -49179937 + AT_rich Low_complexity Low_complexity 1 25 0 1719 164 3 58 chr3 168857305 168857615 -49179543 - AluJo SINE Alu -17 295 3 23 0 0 0 chr3 168857628 168857651 -49179507 + AT_rich Low_complexity Low_complexity 1 23 0 919 200 12 0 chr3 168858230 168858395 -49178763 + MSTD LTR MaLR 230 396 0 557 239 116 0 chr3 168858735 168858890 -49178268 + MIR SINE MIR 90 262 0 29 60 0 0 chr3 168860942 168860992 -49176166 + AT_rich Low_complexity Low_complexity 1 50 0 337 206 15 0 chr3 168861193 168861261 -49175897 + MER89 LTR ERV1 1 69 -490 2328 140 18 13 chr3 168861264 168861649 -49175509 + MER89 LTR ERV1 173 559 0 23 78 0 0 chr3 168862563 168862614 -49174544 + AT_rich Low_complexity Low_complexity 1 51 0 22 80 0 0 chr3 168863038 168863088 -49174070 + AT_rich Low_complexity Low_complexity 1 50 0 789 274 96 18 chr3 168863219 168863500 -49173658 + HAL1 LINE L1 1665 1967 -540 688 269 67 19 chr3 168863643 168864119 -49173039 + HAL1 LINE L1 1983 2507 0 1201 229 8 4 chr3 168864370 168864606 -49172552 - MER8 DNA MER2_type 0 239 3 186 167 0 0 chr3 168864721 168864757 -49172401 + A-rich Low_complexity Low_complexity 4 39 0 25 31 0 0 chr3 168864826 168864858 -49172300 + AT_rich Low_complexity Low_complexity 1 32 0 263 235 0 74 chr3 168866422 168866488 -49170670 - L2 LINE L2 -5 3308 3247 2451 56 3 0 chr3 168866488 168866794 -49170364 - AluY SINE Alu -4 307 1 263 235 0 74 chr3 168866794 168866808 -49170350 - L2 LINE L2 -66 3247 3234 815 311 94 50 chr3 168867641 168867879 -49169279 - L2 LINE L2 -346 2968 2742 3295 38 0 0 chr3 168867879 168868276 -49168882 - L1PA5 LINE L1 -2 6152 5756 815 311 94 50 chr3 168868276 168868663 -49168495 - L2 LINE L2 -572 2742 2315 1303 312 48 45 chr3 168868667 168868994 -49168164 + ERVL LTR ERVL 384 709 -4287 1189 268 17 42 chr3 168868994 168869401 -49167757 - MLT2C1 LTR ERVL 0 397 1 1303 312 48 45 chr3 168869401 168869740 -49167418 + ERVL LTR ERVL 709 1052 -3944 731 351 4 0 chr3 168869736 168870001 -49167157 + ERVL LTR ERVL 1098 1363 -3633 * 832 342 47 10 chr3 168870072 168870542 -49166616 + ERVL LTR ERVL 1473 2023 -2973 416 252 76 0 chr3 168870833 168870964 -49166194 + LTR50 LTR ERVL 27 167 -628 2103 112 30 3 chr3 168871021 168871317 -49165841 - AluSx SINE Alu -8 304 1 1557 346 68 14 chr3 168871445 168872227 -49164931 + ERVL LTR ERVL 4150 4973 -791 658 287 119 51 chr3 168872675 168873069 -49164089 + LTR16A LTR ERVL 25 445 -5 249 193 0 35 chr3 168873213 168873270 -49163888 + MIR SINE MIR 115 169 -93 478 299 25 25 chr3 168873326 168873483 -49163675 - MIR SINE MIR -104 158 2 658 240 70 20 chr3 168873511 168873711 -49163447 - MER63A DNA MER1_type 0 210 1 212 313 114 40 chr3 168873711 168873907 -49163251 - L2 LINE L2 -1770 1544 1334 237 214 86 43 chr3 168875578 168875648 -49161510 - L2 LINE L2 0 3272 3200 668 254 98 8 chr3 168876695 168876931 -49160227 + MIR SINE MIR 6 262 0 4175 233 83 24 chr3 168876958 168878566 -49158592 + L1PA11 LINE L1 1 2941 -4633 961 234 89 23 chr3 168878564 168878821 -49158337 - L1PA12 LINE L1 -6762 819 546 * 21386 133 20 34 chr3 168878817 168882805 -49154353 + L1PA11 LINE L1 2954 6900 -712 236 65 0 0 chr3 168882805 168882836 -49154322 + HSMAR1 DNA Mariner 1257 1287 0 21386 133 20 34 chr3 168882836 168883539 -49153619 + L1PA11 LINE L1 6900 7611 -1 1672 166 7 30 chr3 168884114 168884415 -49152743 + MSTB1 LTR MaLR 2 295 -137 2079 76 11 0 chr3 168884814 168885076 -49152082 - AluY SINE Alu -8 303 39 365 345 173 20 chr3 168886629 168886878 -49150280 + L2 LINE L2 2986 3272 0 12955 140 64 30 chr3 168888160 168888683 -49148475 - Tigger1 DNA MER2_type -1 2417 1914 2447 79 0 0 chr3 168888683 168888986 -49148172 + AluY SINE Alu 1 303 -8 12955 140 64 30 chr3 168888986 168889060 -49148098 - Tigger1 DNA MER2_type -504 1914 1844 1703 155 3 37 chr3 168889060 168889357 -49147801 + AluJb SINE Alu 23 309 -3 12955 140 64 30 chr3 168889357 168891094 -49146064 - Tigger1 DNA MER2_type -574 1844 1 390 314 59 24 chr3 168891315 168891484 -49145674 + MIR3 SINE MIR 33 207 -1 * 627 299 64 0 chr3 168891477 168891711 -49145447 - MIR SINE MIR 0 262 14 219 69 0 0 chr3 168891970 168891999 -49145159 + (CA)n Simple_repeat Simple_repeat 1 29 0 964 200 5 11 chr3 168892651 168892836 -49144322 + AluJo SINE Alu 109 292 -20 21 112 0 0 chr3 168892897 168892995 -49144163 + AT_rich Low_complexity Low_complexity 1 98 0 244 173 0 0 chr3 168893090 168893142 -49144016 + L1ME LINE L1 90 141 -5978 321 366 49 29 chr3 168893542 168893747 -49143411 + L1ME LINE L1 617 825 -5294 1927 154 29 35 chr3 168893747 168894124 -49143034 + THE1C LTR MaLR 1 375 0 374 275 64 0 chr3 168894195 168894398 -49142760 + L1ME LINE L1 885 1111 -5008 1186 182 27 12 chr3 168894469 168894727 -49142431 + L1MA5 LINE L1 6039 6300 0 297 288 47 12 chr3 168894732 168894902 -49142256 + L1ME LINE L1 1196 1371 -4939 1675 233 86 11 chr3 168894927 168895432 -49141726 + MLT1E LTR MaLR 68 593 0 542 284 71 4 chr3 168895490 168895758 -49141400 + L1ME LINE L1 1449 1734 -4576 36 53 0 0 chr3 168896311 168896368 -49140790 + AT_rich Low_complexity Low_complexity 1 57 0 28 0 0 0 chr3 168896958 168896986 -49140172 + AT_rich Low_complexity Low_complexity 1 28 0 907 249 0 0 chr3 168897198 168897379 -49139779 + MIR SINE MIR 6 186 -76 8891 34 0 4 chr3 168897392 168898495 -49138663 + L1P LINE L1 2006 3104 -3042 420 306 56 32 chr3 168898496 168898712 -49138446 - L1 LINE L1 -1796 4350 4130 526 264 104 0 chr3 168898798 168898961 -49138197 - MIR SINE MIR -1 261 82 296 367 51 0 chr3 168899102 168899298 -49137860 - L2 LINE L2 -911 2403 2198 302 315 48 27 chr3 168900190 168900336 -49136822 - MLT1L LTR MaLR -105 510 362 471 250 43 65 chr3 168901949 168902181 -49134977 - LTR16A LTR ERVL -195 255 29 370 275 29 32 chr3 168902211 168902458 -49134700 + L1MC4 LINE L1 7001 7244 -728 469 269 35 96 chr3 168902791 168903249 -49133909 + L1MC5 LINE L1 7512 7941 -20 662 301 95 56 chr3 168904306 168904771 -49132387 - LTR67 LTR ERVL 0 557 75 23 33 0 0 chr3 168905114 168905144 -49132014 + AT_rich Low_complexity Low_complexity 1 30 0 282 240 8 16 chr3 168905493 168905614 -49131544 + (TA)n Simple_repeat Simple_repeat 1 120 0 759 207 39 39 chr3 168905781 168905984 -49131174 - MER3 DNA MER1_type -4 205 3 300 329 49 60 chr3 168906269 168906403 -49130755 - MIR SINE MIR 0 262 133 1364 175 119 4 chr3 168906403 168906559 -49130599 - AluJb SINE Alu -13 299 162 423 0 0 0 chr3 168906559 168906606 -49130552 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1364 175 119 4 chr3 168906606 168906717 -49130441 - AluJb SINE Alu -150 162 1 300 329 49 60 chr3 168906717 168906845 -49130313 - MIR SINE MIR -129 133 5 207 69 0 0 chr3 168907966 168907995 -49129163 + (GA)n Simple_repeat Simple_repeat 2 30 0 202 356 173 0 chr3 168908852 168908956 -49128202 + L2 LINE L2 3141 3262 -10 367 331 15 0 chr3 168909481 168909614 -49127544 + MIR3 SINE MIR 74 208 0 346 257 117 109 chr3 168909671 168909928 -49127230 - MIR SINE MIR 0 262 4 799 248 66 107 chr3 168910559 168910671 -49126487 + MER110 LTR ERV1 38 153 -324 216 0 0 0 chr3 168910671 168910695 -49126463 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 799 248 66 107 chr3 168910695 168911058 -49126100 + MER110 LTR ERV1 153 477 0 827 241 0 6 chr3 168911243 168911413 -49125745 - AluJb SINE Alu -11 301 133 1649 160 65 11 chr3 168911422 168911697 -49125461 - AluSx SINE Alu -22 290 1 3076 25 0 0 chr3 168911723 168912081 -49125077 - L1PA4 LINE L1 -1715 4431 4074 7801 35 1 2 chr3 168912081 168913795 -49123363 + L1PA4 LINE L1 4440 6152 -3 475 284 23 51 chr3 168914505 168914681 -49122477 - L2 LINE L2 -1 3312 3142 270 243 14 14 chr3 168914919 168914989 -49122169 + ORSL DNA AcHobo 197 266 -9 625 251 57 6 chr3 168915550 168915725 -49121433 + MIR SINE MIR 77 260 -2 302 44 0 0 chr3 168916433 168916478 -49120680 + L1PA2 LINE L1 6111 6155 0 686 210 8 0 chr3 168916496 168916615 -49120543 - FLAM_C SINE Alu -23 120 1 543 332 91 57 chr3 168917203 168917811 -49119347 - L2 LINE L2 0 3272 2556 1001 309 68 23 chr3 168917908 168918499 -49118659 + L2 LINE L2 2690 3313 0 245 320 19 19 chr3 168918487 168918590 -49118568 - L2 LINE L2 -840 2474 2372 * 2184 132 8 27 chr3 168918657 168919027 -49118131 - THE1B LTR MaLR -1 363 1 749 119 0 0 chr3 168919027 168919136 -49118022 - THE1B-int LTR MaLR 0 1580 1472 1851 240 106 47 chr3 168919141 168919971 -49117187 + HAL1 LINE L1 1296 2174 -333 612 283 124 46 chr3 168920086 168920496 -49116662 - HAL1 LINE L1 -1194 1313 872 902 210 17 0 chr3 168920501 168920682 -49116476 - MER5A DNA MER1_type 0 189 6 406 174 11 65 chr3 168923867 168923959 -49113199 + MIR SINE MIR 78 164 -98 1045 211 9 28 chr3 168924476 168924694 -49112464 + MER20 DNA MER1_type 6 219 0 22 0 0 0 chr3 168925469 168925491 -49111667 + AT_rich Low_complexity Low_complexity 1 22 0 408 286 148 63 chr3 168925788 168926175 -49110983 + MER115 DNA AcHobo 2 441 -252 1629 198 14 0 chr3 168926268 168926561 -49110597 + AluJb SINE Alu 1 297 -15 230 265 122 11 chr3 168926658 168926839 -49110319 - L1ME LINE L1 -678 5492 5292 27 29 0 0 chr3 168927222 168927256 -49109902 + AT_rich Low_complexity Low_complexity 1 34 0 461 129 35 0 chr3 168927256 168927341 -49109817 + MER115 DNA AcHobo 543 630 -63 22 0 0 0 chr3 168928314 168928336 -49108822 + AT_rich Low_complexity Low_complexity 1 22 0 2449 181 153 22 chr3 168928341 168928927 -49108231 - MER39 LTR ERV1 0 707 1 2097 136 0 0 chr3 168929279 168929580 -49107578 + AluSq SINE Alu 1 301 -12 245 271 17 0 chr3 168929607 168929666 -49107492 - MIR3 SINE MIR -26 182 123 237 360 36 7 chr3 168929764 168929903 -49107255 + L1P LINE L1 4018 4160 -1986 330 288 146 26 chr3 168929947 168930180 -49106978 + L1ME3 LINE L1 5127 5387 -759 8816 161 42 4 chr3 168930294 168934121 -49103037 + L1PBa LINE L1 6 4210 -2652 * 41773 61 2 0 chr3 168934120 168940243 -49096915 - L1PA5 LINE L1 -4 6150 14 8561 203 4 6 chr3 168940270 168942138 -49095020 + L1 LINE L1 4226 6089 -773 2294 123 6 11 chr3 168942140 168942497 -49094661 + THE1A LTR MaLR 1 355 0 3834 99 14 7 chr3 168942497 168943053 -49094105 + THE1A-int LTR MaLR 1 560 -1020 767 174 118 36 chr3 168943183 168943378 -49093780 + MSTB1 LTR MaLR 221 431 -1 910 158 0 12 chr3 168943714 168943885 -49093273 + L1MA4A LINE L1 6129 6297 -6 315 0 0 0 chr3 168944772 168944807 -49092351 + (CA)n Simple_repeat Simple_repeat 2 36 0 536 276 113 50 chr3 168945701 168946064 -49091094 + HAL1 LINE L1 52 437 -2070 253 340 85 26 chr3 168946130 168946283 -49090875 + LTR67 LTR ERVL 352 513 -44 351 245 19 38 chr3 168946292 168946398 -49090760 + L1ME3 LINE L1 5601 5704 -458 234 125 0 0 chr3 168946398 168946430 -49090728 + AluY SINE Alu 1 32 -271 879 57 90 0 chr3 168946432 168946554 -49090604 - LTR12 LTR ERV1 0 714 582 5753 95 44 0 chr3 168946554 168947345 -49089813 - LTR12 LTR ERV1 0 826 1 2276 71 4 0 chr3 168947345 168947625 -49089533 + AluY SINE Alu 31 311 0 929 235 88 41 chr3 168947630 168948017 -49089141 + L1ME3 LINE L1 5691 6095 -67 266 247 0 11 chr3 168948055 168948144 -49089014 + GA-rich Low_complexity Low_complexity 3 90 0 344 289 52 21 chr3 168951124 168951221 -49085937 + L2 LINE L2 3163 3262 -10 1738 140 61 14 chr3 168951897 168952176 -49084982 + AluSg SINE Alu 1 292 -18 1879 128 24 10 chr3 168952594 168952891 -49084267 - AluSx SINE Alu -11 301 1 300 70 0 0 chr3 168953664 168953707 -49083451 + (TG)n Simple_repeat Simple_repeat 2 44 0 1775 207 85 83 chr3 168953858 168954472 -49082686 + MLT1E2 LTR MaLR 3 617 -9 936 243 84 87 chr3 168954828 168955720 -49081438 + L1MC5 LINE L1 6894 7782 -179 219 114 0 0 chr3 168955727 168955762 -49081396 + (TA)n Simple_repeat Simple_repeat 1 35 0 261 0 0 0 chr3 168955886 168955915 -49081243 + (CA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr3 168956021 168956044 -49081114 + AT_rich Low_complexity Low_complexity 1 23 0 303 318 155 8 chr3 168956078 168956336 -49080822 + HAL1 LINE L1 1351 1646 -861 2386 242 22 12 chr3 168956581 168957175 -49079983 + L1ME3A LINE L1 5467 6066 -104 387 321 12 12 chr3 168957302 168957467 -49079691 + L1MDa LINE L1 2417 2581 -3959 1627 177 3 30 chr3 168957792 168958091 -49079067 - AluJo SINE Alu -21 291 1 364 82 33 0 chr3 168959181 168959242 -49077916 + (GA)n Simple_repeat Simple_repeat 2 64 0 823 218 98 16 chr3 168959258 168959451 -49077707 + MER63A DNA MER1_type 2 210 0 226 220 34 0 chr3 168960257 168960316 -49076842 + (TA)n Simple_repeat Simple_repeat 2 62 0 249 33 0 0 chr3 168960332 168960362 -49076796 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 5018 44 13 0 chr3 168960362 168960972 -49076186 - L1PA7 LINE L1 -18 6136 5519 1265 153 8 29 chr3 168961461 168961702 -49075456 - MER46A DNA MER2_type 0 236 1 268 228 39 6 chr3 168962320 168962457 -49074701 + Charlie2 DNA MER1_type 6 222 -2640 344 219 47 39 chr3 168962585 168962708 -49074450 + Charlie2 DNA MER1_type 1879 2002 -860 257 140 0 70 chr3 168962708 168962765 -49074393 - MLT2C2 LTR ERVL -2 513 461 457 210 14 14 chr3 168962765 168962908 -49074250 + (CAGAGA)n Simple_repeat Simple_repeat 5 147 0 2456 173 20 11 chr3 168962908 168963348 -49073810 - MLT2C2 LTR ERVL -20 444 1 1724 201 103 96 chr3 168963354 168964205 -49072953 + Charlie2 DNA MER1_type 2006 2862 0 213 182 200 0 chr3 168964321 168964376 -49072782 - MIR3 SINE MIR -34 174 109 210 71 0 0 chr3 168964887 168964915 -49072243 + (T)n Simple_repeat Simple_repeat 1 28 0 189 74 0 0 chr3 168965467 168965494 -49071664 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 383 109 0 0 chr3 168965805 168965860 -49071298 - L1PA5 LINE L1 -1 6153 6099 482 271 97 7 chr3 168968415 168968559 -49068599 - MIR3 SINE MIR -7 201 45 485 300 56 0 chr3 168968594 168968754 -49068404 + MER5B DNA MER1_type 9 177 -1 272 250 0 15 chr3 168968856 168968924 -49068234 - MER94 DNA DNA -46 88 22 320 177 0 0 chr3 168969588 168969650 -49067508 + L1MA6 LINE L1 6239 6300 0 2027 58 0 39 chr3 168969671 168969929 -49067229 + AluY SINE Alu 44 291 -20 293 327 41 68 chr3 168969942 168970208 -49066950 - MLT1K LTR MaLR -164 424 166 339 298 7 64 chr3 168971346 168971487 -49065671 + MER5A DNA MER1_type 57 189 0 21 57 0 0 chr3 168971537 168971572 -49065586 + AT_rich Low_complexity Low_complexity 1 35 0 1386 285 33 50 chr3 168971741 168971973 -49065185 - L2 LINE L2 -2 3311 3077 811 231 158 82 chr3 168971973 168972341 -49064817 + MSTD LTR MaLR 1 396 0 1386 285 33 50 chr3 168972341 168972703 -49064455 - L2 LINE L2 -236 3077 2731 491 344 20 16 chr3 168973210 168973515 -49063643 + L1MEd LINE L1 522 827 -5292 475 91 0 26 chr3 168973616 168973693 -49063465 + L1MA5A LINE L1 6144 6218 -79 404 116 12 23 chr3 168973808 168973894 -49063264 + L1MA5A LINE L1 6211 6295 -2 548 191 0 55 chr3 168973906 168974016 -49063142 - AluSg SINE Alu -192 118 15 473 294 117 33 chr3 168974058 168974629 -49062529 + L1MEd LINE L1 942 1589 -4721 246 273 50 33 chr3 168974646 168974767 -49062391 + L1ME LINE L1 571 693 -5941 2302 106 0 7 chr3 168975273 168975576 -49061582 + AluSx SINE Alu 1 301 -11 295 150 50 30 chr3 168975692 168975792 -49061366 + (TATAA)n Simple_repeat Simple_repeat 2 103 0 301 299 125 33 chr3 168975794 168975978 -49061180 + L1ME LINE L1 1272 1472 -5070 1255 185 11 26 chr3 168976036 168976301 -49060857 + L1PA15 LINE L1 5905 6165 0 3058 194 33 3 chr3 168976301 168976960 -49060198 + L1MB2 LINE L1 5473 6167 -4 1023 239 111 3 chr3 168977116 168977572 -49059586 + L1ME3A LINE L1 5314 5834 -332 1602 190 7 20 chr3 168977826 168978131 -49059027 - AluJo SINE Alu -10 302 2 523 352 36 8 chr3 168978131 168978523 -49058635 - L1MEc LINE L1 -2449 3766 3364 1456 227 93 25 chr3 168979152 168979583 -49057575 - MLT1C LTR MaLR 0 467 8 454 189 38 76 chr3 168979587 168979719 -49057439 - L1MB8 LINE L1 -29 6149 6023 486 322 99 14 chr3 168979723 168980145 -49057013 - L1MEc LINE L1 -4671 1725 1268 245 245 0 0 chr3 168982025 168982074 -49055084 + (CA)n Simple_repeat Simple_repeat 2 50 0 1959 148 7 0 chr3 168982478 168982782 -49054376 + AluSx SINE Alu 1 306 -6 25 31 0 0 chr3 168983010 168983042 -49054116 + AT_rich Low_complexity Low_complexity 1 32 0 1179 258 89 40 chr3 168984216 168984665 -49052493 + MLT1H1 LTR MaLR 1 471 -84 223 183 0 50 chr3 168984666 168984726 -49052432 + (TATATG)n Simple_repeat Simple_repeat 5 61 0 227 175 35 18 chr3 168984726 168984783 -49052375 + MLT1H1 LTR MaLR 475 532 -10 348 333 11 0 chr3 168984924 168985014 -49052144 + MIR SINE MIR 2 92 -170 1302 139 0 13 chr3 168985107 168985337 -49051821 + L1MA1 LINE L1 6076 6302 0 1867 108 11 11 chr3 168985582 168985868 -49051290 - L1PA10 LINE L1 -167 6001 5716 205 329 71 12 chr3 168986016 168986101 -49051057 + L2 LINE L2 2953 3042 -230 310 233 184 0 chr3 168986176 168986279 -49050879 + HsTC2 DNA Tc2 5 126 -1772 226 239 0 0 chr3 168986274 168986320 -49050838 + HsTC2 DNA Tc2 1230 1275 -623 * 201 455 27 0 chr3 168986358 168986468 -49050690 + L2 LINE L2 3110 3222 -50 274 277 12 0 chr3 168986688 168986771 -49050387 + L1ME LINE L1 5510 5593 -528 928 278 42 16 chr3 168986999 168987377 -49049781 + L1MC4 LINE L1 7089 7476 -566 317 280 27 0 chr3 168988556 168988631 -49048527 + L1MEd LINE L1 940 1016 -5103 355 190 0 0 chr3 168988672 168988730 -49048428 - Tigger5 DNA MER2_type 0 2323 2266 2342 134 75 10 chr3 168988853 168989255 -49047903 - MSTA LTR MaLR 0 428 1 810 234 266 8 chr3 168989255 168989499 -49047659 - Tigger5 DNA MER2_type -2016 307 1 250 281 0 0 chr3 168989545 168989627 -49047531 + L1MEd LINE L1 1173 1254 -5056 24 0 0 0 chr3 168989744 168989768 -49047390 + AT_rich Low_complexity Low_complexity 1 24 0 361 279 49 16 chr3 168989781 168989964 -49047194 - L1MEc LINE L1 -4579 1817 1629 1170 293 68 35 chr3 168989973 168990258 -49046900 + L1MEd LINE L1 1258 1532 -4597 983 195 12 0 chr3 168990258 168990427 -49046731 + FAM SINE Alu 1 171 -4 1170 293 68 35 chr3 168990427 168991303 -49045855 + L1MEd LINE L1 1532 2471 -3658 739 155 0 0 chr3 168991733 168991890 -49045268 - FLAM_C SINE Alu 0 157 1 841 207 16 54 chr3 168993749 168993835 -49043323 - MER20B DNA MER1_type -36 747 659 1828 153 46 56 chr3 168993835 168994227 -49042931 - MLT1B LTR MaLR 0 390 3 841 207 16 54 chr3 168994227 168994382 -49042776 - MER20B DNA MER1_type -124 659 515 25 65 0 0 chr3 168995156 168995202 -49041956 + AT_rich Low_complexity Low_complexity 1 46 0 1515 262 57 8 chr3 168995211 168995688 -49041470 - MER20B DNA MER1_type -283 500 1 7182 39 0 0 chr3 168995720 168996616 -49040542 - L1P LINE L1 -2238 3908 3013 9853 18 0 0 chr3 168996617 168997762 -49039396 + L1P LINE L1 3911 5055 -1091 8759 39 4 0 chr3 168997912 168999607 -49037551 - L1PA4 LINE L1 -139 6016 4318 * 17078 43 7 1 chr3 168999606 169001773 -49035385 + L1PA3 LINE L1 1991 4171 -1975 7359 38 0 1 chr3 169001912 169002804 -49034354 + L1PA3 LINE L1 5265 6155 0 1763 176 7 0 chr3 169003646 169003942 -49033216 + AluSx SINE Alu 7 304 -8 27 62 0 0 chr3 169004247 169004295 -49032863 + AT_rich Low_complexity Low_complexity 1 48 0 292 273 20 27 chr3 169004302 169004452 -49032706 + L1MEd LINE L1 991 1139 -4980 1338 107 39 5 chr3 169005042 169005247 -49031911 + AluSq SINE Alu 96 307 -6 1672 188 176 21 chr3 169005695 169006206 -49030952 + LTR49 LTR ERV1 1 590 -5 5631 118 11 2 chr3 169006545 169007340 -49029818 + THE1A-int LTR MaLR 773 1574 -6 2281 121 11 11 chr3 169007345 169007700 -49029458 + THE1A LTR MaLR 1 355 0 2932 95 5 5 chr3 169007700 169008121 -49029037 + L1PB1 LINE L1 5371 5791 -360 2401 118 5 16 chr3 169008181 169008554 -49028604 + L1PB1 LINE L1 5781 6149 -2 205 182 0 0 chr3 169008554 169008598 -49028560 + (TTAAA)n Simple_repeat Simple_repeat 1 44 0 211 125 25 0 chr3 169008751 169008791 -49028367 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 564 186 35 0 chr3 169009520 169009633 -49027525 + LTR49 LTR ERV1 474 590 -5 252 0 0 0 chr3 169009935 169009963 -49027195 + (A)n Simple_repeat Simple_repeat 1 28 0 25 51 0 0 chr3 169010186 169010225 -49026933 + AT_rich Low_complexity Low_complexity 1 39 0 406 259 94 43 chr3 169010307 169010562 -49026596 + L1ME3A LINE L1 1063 1330 -5066 271 191 44 0 chr3 169010768 169010836 -49026322 + L1ME3A LINE L1 2058 2128 -4268 1552 173 124 49 chr3 169010968 169011436 -49025722 - MLT1D LTR MaLR -2 503 1 23 0 0 0 chr3 169011768 169011791 -49025367 + AT_rich Low_complexity Low_complexity 1 23 0 359 191 19 29 chr3 169012168 169012273 -49024885 + L1ME3A LINE L1 3733 3836 -2379 23 0 0 0 chr3 169012278 169012301 -49024857 + AT_rich Low_complexity Low_complexity 1 23 0 801 147 0 15 chr3 169012307 169012443 -49024715 - U8 snRNA snRNA -2 134 1 309 319 60 9 chr3 169012456 169012572 -49024586 + L1ME3A LINE L1 3842 3963 -2252 624 283 121 53 chr3 169012716 169013169 -49023989 - LTR33A LTR ERVL 0 523 40 1336 111 103 0 chr3 169013504 169013757 -49023401 + L1MA2 LINE L1 6026 6304 0 344 358 7 17 chr3 169013909 169014084 -49023074 + G-rich Low_complexity Low_complexity 3 296 0 484 302 137 29 chr3 169014205 169015158 -49022000 + L1ME3A LINE L1 4621 5686 -553 353 273 55 22 chr3 169015221 169015404 -49021754 + L1ME3A LINE L1 5829 6017 -222 24 67 0 0 chr3 169015668 169015713 -49021445 + AT_rich Low_complexity Low_complexity 1 45 0 261 173 19 0 chr3 169016979 169017031 -49020127 - L2 LINE L2 -12 3260 3208 336 319 59 8 chr3 169017307 169017426 -49019732 - MIR SINE MIR -65 143 19 1833 127 45 0 chr3 169018231 169018498 -49018660 + AluSx SINE Alu 1 279 -33 201 127 25 63 chr3 169018833 169018912 -49018246 + GA-rich Low_complexity Low_complexity 2 77 0 626 283 145 55 chr3 169019021 169019512 -49017646 + MLT1H LTR MaLR 13 547 -2 451 287 49 40 chr3 169019591 169019838 -49017320 + MLT1J LTR MaLR 232 480 -31 1394 186 14 14 chr3 169021347 169021642 -49015516 + AluSp SINE Alu 1 295 -18 5577 116 6 2 chr3 169221760 169222577 -48814581 - HSMAR1 DNA Mariner -273 1014 195 4582 54 15 2 chr3 169222577 169223188 -48813970 + MER11B LTR ERVK 1 619 -617 862 94 0 0 chr3 169223288 169223415 -48813743 + HSMAR1 DNA Mariner 1157 1283 -4 324 246 10 11 chr3 169223961 169224076 -48813082 - L1ME LINE L1 -588 5578 5466 403 184 112 20 chr3 169224221 169224319 -48812839 + MIR SINE MIR 104 210 -52 545 286 33 29 chr3 169225585 169225830 -48811328 + MLT1K LTR MaLR 323 568 -20 204 327 103 9 chr3 169226196 169226303 -48810855 + L2 LINE L2 3197 3313 0 221 240 20 0 chr3 169226442 169226492 -48810666 + MIR3 SINE MIR 153 203 -5 4235 113 29 6 chr3 169226758 169227388 -48809770 - LTR9B LTR ERV1 0 644 1 265 216 81 14 chr3 169227408 169227482 -48809676 - MER5B DNA MER1_type -13 165 87 354 23 0 0 chr3 169227841 169227884 -48809274 + (TG)n Simple_repeat Simple_repeat 2 44 0 195 162 0 0 chr3 169230187 169230224 -48806934 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 291 322 96 26 chr3 169230229 169230344 -48806814 - L2 LINE L2 -5 3267 3145 1787 166 0 4 chr3 169230399 169230676 -48806482 + AluJb SINE Alu 1 276 -36 1101 322 151 14 chr3 169230898 169231674 -48805484 - L2 LINE L2 -343 2971 2090 404 241 19 9 chr3 169231743 169231851 -48805307 + LTR33 LTR ERVL 37 145 -376 228 245 20 0 chr3 169232003 169232052 -48805106 - LTR33 LTR ERVL -259 262 213 750 155 0 0 chr3 169233806 169233922 -48803236 + FLAM_C SINE Alu 1 116 -27 257 75 25 0 chr3 169233923 169233963 -48803195 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 757 294 67 25 chr3 169234393 169235258 -48801900 - L1MEc LINE L1 -3658 2557 1643 667 208 16 0 chr3 169235258 169235383 -48801775 - FAM SINE Alu -2 47 1 2077 101 16 45 chr3 169235696 169236004 -48801154 - AluY SINE Alu -12 299 1 397 282 0 0 chr3 169236875 169236953 -48800205 - L2 LINE L2 -26 3287 3210 22 35 0 0 chr3 169237587 169237616 -48799542 + AT_rich Low_complexity Low_complexity 1 29 0 289 290 0 0 chr3 169237816 169237878 -48799280 - MIR SINE MIR -110 98 37 1879 162 13 13 chr3 169237949 169238257 -48798901 + AluJb SINE Alu 1 308 -4 229 289 21 14 chr3 169238356 169238498 -48798660 - L1MC4a LINE L1 -1799 6009 5867 280 200 0 46 chr3 169238726 169238791 -48798367 - MIR SINE MIR -64 144 83 1715 187 60 51 chr3 169238899 169239348 -48797810 - MER82 DNA MER2_type -1 652 200 1127 163 47 13 chr3 169239367 169239600 -48797558 - MER82 DNA MER2_type -405 248 8 2026 143 10 7 chr3 169239729 169240037 -48797121 + AluJb SINE Alu 1 309 -3 768 291 45 32 chr3 169240159 169240406 -48796752 + MIR SINE MIR 1 250 -12 367 129 0 16 chr3 169240456 169240518 -48796640 - MER94 DNA DNA -72 62 2 2247 140 12 25 chr3 169240843 169241243 -48795915 - L1MC1 LINE L1 -5 6328 5934 783 279 57 29 chr3 169241292 169241607 -48795551 - L2 LINE L2 -978 2336 2013 1961 164 3 0 chr3 169242062 169242367 -48794791 + AluSx SINE Alu 1 306 -6 513 268 25 6 chr3 169243844 169244001 -48793157 - Charlie8 DNA MER1_type -2200 217 58 234 0 0 0 chr3 169245406 169245432 -48791726 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 630 262 0 8 chr3 169246469 169246591 -48790567 - FLAM_A SINE Alu -12 121 1 2191 116 0 10 chr3 169247569 169247879 -48789279 + AluSg SINE Alu 1 307 -3 2706 164 57 10 chr3 169247879 169248463 -48788695 - L1MB8 LINE L1 -5 6173 5563 202 364 34 8 chr3 169248581 169248699 -48788459 + L2 LINE L2 2737 2857 -457 432 266 8 32 chr3 169249185 169249309 -48787849 + L2 LINE L2 3190 3310 -3 2089 179 87 11 chr3 169249474 169249922 -48787236 - MLT1D LTR MaLR 0 505 24 882 304 12 16 chr3 169250502 169250759 -48786399 - MIR SINE MIR 0 262 7 245 283 174 0 chr3 169252499 169252591 -48784567 - L2 LINE L2 0 3272 3165 195 270 63 16 chr3 169254777 169254840 -48782318 - L2 LINE L2 0 3272 3207 193 160 20 20 chr3 169254868 169254918 -48782240 + (TA)n Simple_repeat Simple_repeat 1 50 0 322 274 68 135 chr3 169254919 169255171 -48781987 - L2 LINE L2 -67 3205 2971 298 224 90 0 chr3 169255605 169255672 -48781486 + MIR SINE MIR 99 171 -91 2548 61 0 10 chr3 169256778 169257090 -48780068 - AluY SINE Alu -2 309 1 1885 258 51 60 chr3 169257958 169258757 -48778401 - MER21B LTR ERV1 -58 805 14 363 60 0 0 chr3 169258943 169258993 -48778165 + (CA)n Simple_repeat Simple_repeat 2 51 0 661 207 6 10 chr3 169259030 169259195 -48777963 + L1M3 LINE L1 5628 5795 -356 204 200 18 18 chr3 169259203 169259258 -48777900 + (TA)n Simple_repeat Simple_repeat 2 56 0 2043 144 0 3 chr3 169259305 169259604 -48777554 + AluSx SINE Alu 1 298 -14 1828 107 0 0 chr3 169259801 169260064 -48777094 - HSMAR1 DNA Mariner -830 457 195 6875 82 7 20 chr3 169260064 169261086 -48776072 + MER11C LTR ERVK 1 1009 -62 937 73 186 6 chr3 169261087 169261264 -48775894 - HSMAR1 DNA Mariner -1078 209 1 7179 26 5 0 chr3 169261413 169262266 -48774892 + L1PA4 LINE L1 5299 6155 0 1977 155 119 13 chr3 169262932 169263319 -48773839 - MSTA LTR MaLR 0 428 1 776 348 30 18 chr3 169264037 169264431 -48772727 + LTR16C LTR ERVL 93 491 0 191 373 0 0 chr3 169264463 169264514 -48772644 - L2 LINE L2 -48 3224 3174 10434 218 14 22 chr3 169264651 169267196 -48769962 + L1PA16 LINE L1 2764 5327 -839 1654 205 67 114 chr3 169267196 169267777 -48769381 + MLT2B3 LTR ERVL 1 554 0 10434 218 14 22 chr3 169267777 169268172 -48768986 + L1PA16 LINE L1 5327 5724 -442 2081 112 11 0 chr3 169268172 169268486 -48768672 + AluSp SINE Alu 1 317 0 10434 218 14 22 chr3 169268486 169268926 -48768232 + L1PA16 LINE L1 5724 6157 -9 23 33 0 0 chr3 169269009 169269039 -48768119 + AT_rich Low_complexity Low_complexity 1 30 0 245 207 49 49 chr3 169269446 169269528 -48767630 - MLT1K LTR MaLR -40 548 467 495 254 0 8 chr3 169269721 169269855 -48767303 + L1PA16 LINE L1 5977 6109 -57 551 127 0 0 chr3 169271345 169271424 -48765734 + AluSx SINE Alu 1 79 -233 824 200 7 0 chr3 169271589 169271729 -48765429 - FRAM SINE Alu -35 141 1 303 163 0 0 chr3 169271736 169271785 -48765373 + AluSx SINE Alu 70 118 -182 244 128 0 0 chr3 169271787 169271826 -48765332 - AluJ/FLAM SINE Alu -114 189 151 747 98 0 0 chr3 169271826 169271928 -48765230 - AluJ/FLAM SINE Alu -210 102 1 1104 191 126 42 chr3 169272024 169272453 -48764705 - MER66B LTR ERV1 0 486 111 664 322 53 4 chr3 169273146 169273373 -48763785 + Charlie8 DNA MER1_type 37 274 -2143 1721 168 7 18 chr3 169273511 169273796 -48763362 - AluJo SINE Alu -30 282 1 23 0 0 0 chr3 169273804 169273827 -48763331 + AT_rich Low_complexity Low_complexity 1 23 0 213 175 0 0 chr3 169274049 169274089 -48763069 + (TAG)n Simple_repeat Simple_repeat 2 41 0 198 271 51 85 chr3 169274100 169274218 -48762940 - MIR SINE MIR -3 259 146 252 245 93 58 chr3 169274490 169274629 -48762529 + LTR16A1 LTR ERVL 304 447 -10 3557 131 8 6 chr3 169274737 169275247 -48761911 - MER9 LTR ERVK 0 511 1 239 222 56 0 chr3 169275830 169275884 -48761274 + MIR SINE MIR 107 163 -99 857 143 95 14 chr3 169275970 169276117 -48761041 + FRAM SINE Alu 2 160 -16 188 420 51 19 chr3 169276172 169276329 -48760829 + L2 LINE L2 3109 3270 -2 224 316 25 0 chr3 169277402 169277481 -48759677 - MIR3 SINE MIR -23 185 105 676 181 17 9 chr3 169277602 169277718 -48759440 + MER2 DNA MER2_type 1 117 -228 188 262 0 0 chr3 169278878 169278920 -48758238 + L2 LINE L2 3267 3308 -5 21 36 0 0 chr3 169279075 169279103 -48758055 + AT_rich Low_complexity Low_complexity 1 28 0 2127 106 35 0 chr3 169279641 169279923 -48757235 - AluSc SINE Alu -17 292 1 827 248 55 42 chr3 169280169 169280407 -48756751 + MIR SINE MIR 8 248 -14 229 175 0 0 chr3 169280528 169280568 -48756590 - Charlie8 DNA MER1_type -1001 1416 1377 7788 93 136 119 chr3 169280569 169282238 -48754920 + pTR5 LTR ERV1 741 2438 0 592 255 28 7 chr3 169282313 169282454 -48754704 - Charlie8 DNA MER1_type -2201 216 73 276 307 57 36 chr3 169282504 169282644 -48754514 - MIR3 SINE MIR -36 172 30 2278 106 3 0 chr3 169283332 169283633 -48753525 - AluSx SINE Alu -10 302 1 1683 290 121 6 chr3 169283703 169284230 -48752928 - MLT1E LTR MaLR -3 590 3 966 294 50 22 chr3 169284715 169285072 -48752086 - L1MDa LINE L1 -6140 400 34 1623 191 6 16 chr3 169285411 169285726 -48751432 + AluJo SINE Alu 1 312 0 329 222 15 29 chr3 169285752 169285864 -48751294 + L1MC5 LINE L1 7833 8042 0 440 309 165 41 chr3 169285874 169286388 -48750770 - L2 LINE L2 -610 2704 2127 249 88 0 0 chr3 169286444 169286478 -48750680 + L1MD3 LINE L1 6730 6763 -1232 278 208 52 26 chr3 169286489 169286566 -48750592 + MLT1K LTR MaLR 103 181 -286 2125 128 0 3 chr3 169286569 169286867 -48750291 + AluSx SINE Alu 3 299 -13 2144 226 166 10 chr3 169287002 169288110 -48749048 + L1MC4 LINE L1 6471 7903 -139 1555 181 7 14 chr3 169289669 169289957 -48747201 + AluJb SINE Alu 5 290 -22 264 222 48 0 chr3 169290121 169290184 -48746974 + MIR SINE MIR 120 185 -77 232 284 15 15 chr3 169290691 169290758 -48746400 + MIR SINE MIR 23 89 -173 216 0 0 0 chr3 169290759 169290783 -48746375 + (TG)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chr3 169290819 169290847 -48746311 + AT_rich Low_complexity Low_complexity 1 28 0 919 279 120 21 chr3 169291258 169291634 -48745524 + MLT1K LTR MaLR 168 580 -8 317 176 43 176 chr3 169292025 169292149 -48745009 - MER112 DNA MER1_type -34 226 134 1982 159 0 10 chr3 169292149 169292457 -48744701 + AluJb SINE Alu 1 305 -7 317 176 43 176 chr3 169292457 169292519 -48744639 - MER112 DNA MER1_type -126 134 65 227 224 52 0 chr3 169292595 169292653 -48744505 + MIR SINE MIR 140 200 -62 354 252 76 86 chr3 169292708 169292891 -48744267 - L1MC4a LINE L1 -1926 5882 5702 2379 92 0 0 chr3 169292891 169293197 -48743961 + AluY SINE Alu 1 306 -5 354 252 76 86 chr3 169293197 169293303 -48743855 - L1MC4a LINE L1 -2106 5702 5596 556 306 75 70 chr3 169293814 169294331 -48742827 + MLT1K LTR MaLR 69 588 0 366 340 27 0 chr3 169294545 169294695 -48742463 + MIR3 SINE MIR 37 190 -18 1209 248 48 30 chr3 169295177 169295508 -48741650 - MER102b DNA MER1_type -4 337 1 768 304 78 35 chr3 169296049 169296368 -48740790 - MLT1E LTR MaLR 0 593 261 26 50 0 0 chr3 169296548 169296588 -48740570 + AT_rich Low_complexity Low_complexity 1 40 0 290 262 42 89 chr3 169296658 169296849 -48740309 - L1MC5 LINE L1 -33 7928 7747 23 0 0 0 chr3 169296886 169296909 -48740249 + AT_rich Low_complexity Low_complexity 1 23 0 185 237 105 0 chr3 169296926 169296964 -48740194 - L2 LINE L2 -18 3295 3254 22 35 0 0 chr3 169297138 169297167 -48739991 + AT_rich Low_complexity Low_complexity 1 29 0 2446 93 3 0 chr3 169297555 169297867 -48739291 + AluSp SINE Alu 1 313 0 2081 210 37 128 chr3 169297871 169298708 -48738450 + LTR41 LTR ERVL 7 767 -6 1751 121 105 0 chr3 169298904 169299190 -48737968 + AluSx SINE Alu 1 313 0 341 293 78 56 chr3 169299270 169299502 -48737656 + L1M4 LINE L1 3387 3623 -2523 817 94 0 0 chr3 169299728 169299834 -48737324 - AluSc SINE Alu -17 292 187 231 322 60 0 chr3 169300067 169300216 -48736942 + L1M4 LINE L1 5184 5341 -805 280 316 20 0 chr3 169300487 169300585 -48736573 + MER5A DNA MER1_type 7 106 -83 2561 49 0 3 chr3 169300655 169300959 -48736199 + AluY SINE Alu 1 303 -8 301 315 33 0 chr3 169301125 169301217 -48735941 - MIR SINE MIR -111 151 57 185 118 255 20 chr3 169301418 169301469 -48735689 - MIR SINE MIR -66 142 79 405 318 12 0 chr3 169302168 169302341 -48734817 - L1ME3A LINE L1 -296 5874 5700 441 310 7 0 chr3 169302364 169302509 -48734649 - L1ME3A LINE L1 -544 5620 5475 225 154 0 0 chr3 169302509 169302548 -48734610 + (TA)n Simple_repeat Simple_repeat 1 39 0 976 85 16 0 chr3 169302565 169302694 -48734464 - AluSc SINE Alu -178 131 1 378 240 110 12 chr3 169302739 169302958 -48734200 - L1ME3A LINE L1 -731 5431 5173 36 19 0 19 chr3 169302958 169302973 -48734185 + AT_rich Low_complexity Low_complexity 1 15 -38 1588 114 0 9 chr3 169302973 169303193 -48733965 - AluSg/x SINE Alu -24 286 69 36 19 0 19 chr3 169303193 169303231 -48733927 + AT_rich Low_complexity Low_complexity 15 53 0 525 237 0 8 chr3 169303364 169303482 -48733676 - L2 LINE L2 0 3313 3197 22 0 0 0 chr3 169303744 169303766 -48733392 + AT_rich Low_complexity Low_complexity 1 22 0 480 156 0 0 chr3 169304765 169304842 -48732316 + MER53 DNA DNA 2 78 -111 370 167 24 24 chr3 169304780 169304864 -48732294 - MER53 DNA DNA -7 182 99 * 400 203 13 0 chr3 169306027 169306106 -48731052 + MER116 DNA Mariner 1 80 0 290 350 24 8 chr3 169307116 169307239 -48729919 - MIR SINE MIR -62 146 22 213 286 108 47 chr3 169307246 169307459 -48729699 + L2 LINE L2 1701 1926 -1388 220 270 40 27 chr3 169307491 169307565 -48729593 + L2 LINE L2 3171 3245 -27 604 216 13 33 chr3 169307840 169307993 -48729165 + MIR SINE MIR 103 252 -10 413 239 146 22 chr3 169308217 169308443 -48728715 + MLT1F LTR MaLR 285 538 -4 21 82 0 0 chr3 169308628 169308677 -48728481 + AT_rich Low_complexity Low_complexity 1 49 0 349 314 62 47 chr3 169308778 169308909 -48728249 - L1MC/D LINE L1 -2213 5595 5467 2256 108 0 0 chr3 169308909 169309205 -48727953 + AluSg1 SINE Alu 1 296 -13 349 314 62 47 chr3 169309205 169309347 -48727811 - L1MC/D LINE L1 -2341 5467 5318 213 141 42 0 chr3 169309405 169309476 -48727682 + (TA)n Simple_repeat Simple_repeat 2 75 0 38 0 0 0 chr3 169309511 169309549 -48727609 + AT_rich Low_complexity Low_complexity 1 38 0 2048 122 76 60 chr3 169309734 169310103 -48727055 - THE1C LTR MaLR 0 375 1 228 200 20 0 chr3 169310681 169310731 -48726427 + L2 LINE L2 3263 3313 0 428 253 112 22 chr3 169310977 169311155 -48726003 + HsTC2 DNA Tc2 1 194 -1704 1121 223 16 8 chr3 169311180 169311422 -48725736 + HsTC2 DNA Tc2 500 743 -1155 1086 196 179 28 chr3 169311420 169311772 -48725386 + HsTC2 DNA Tc2 1272 1852 -46 * 2299 85 3 3 chr3 169312244 169312538 -48724620 + AluSp SINE Alu 1 294 -19 305 190 60 52 chr3 169312597 169312713 -48724445 - L1ME4a LINE L1 -14 6107 5991 428 249 166 28 chr3 169313009 169313262 -48723896 - L2 LINE L2 0 3313 3026 242 326 101 31 chr3 169313313 169313442 -48723716 - L2 LINE L2 -429 2885 2748 232 273 23 0 chr3 169314048 169314136 -48723022 + G-rich Low_complexity Low_complexity 4 93 0 210 118 0 0 chr3 169317082 169317116 -48720042 + (T)n Simple_repeat Simple_repeat 1 34 0 343 290 76 28 chr3 169318124 169318269 -48718889 - MIR3 SINE MIR -52 156 5 319 320 13 55 chr3 169318576 169318768 -48718390 + MIR SINE MIR 4 192 -62 381 312 99 41 chr3 169318996 169319483 -48717675 + L2 LINE L2 2325 2892 -422 6774 137 87 13 chr3 169319501 169320647 -48716511 - Tigger3b DNA MER2_type 0 1231 1 885 240 25 123 chr3 169320853 169320962 -48716196 + L2 LINE L2 2733 2851 -462 1870 149 45 3 chr3 169320962 169321251 -48715907 - AluSx SINE Alu -8 304 4 885 240 25 123 chr3 169321251 169321778 -48715380 + L2 LINE L2 2851 3313 0 268 257 152 38 chr3 169321841 169321946 -48715212 + L2 LINE L2 3156 3272 0 249 243 0 0 chr3 169322752 169322822 -48714336 + (TATG)n Simple_repeat Simple_repeat 2 71 0 2106 126 20 0 chr3 169322863 169323156 -48714002 - AluSx SINE Alu -13 299 1 399 248 118 43 chr3 169323825 169324047 -48713111 - Charlie8 DNA MER1_type -999 1418 100 322 240 47 47 chr3 169324904 169325033 -48712125 - L1MC4 LINE L1 0 8042 7914 284 226 29 10 chr3 169325412 169325514 -48711644 + (TA)n Simple_repeat Simple_repeat 2 105 0 227 143 0 0 chr3 169326171 169326206 -48710952 + L1P LINE L1 4824 4858 -1288 8437 154 27 12 chr3 169326208 169326895 -48710263 - L1P LINE L1 -1276 4870 4195 213 39 0 0 chr3 169326895 169326921 -48710237 + (TTTC)n Simple_repeat Simple_repeat 4 29 0 8437 154 27 12 chr3 169326921 169326958 -48710200 - L1P LINE L1 -1951 4195 4160 1865 126 58 58 chr3 169326958 169327322 -48709836 - THE1B LTR MaLR 0 364 1 8437 154 27 12 chr3 169327322 169328143 -48709015 - L1P LINE L1 -1986 4160 3301 231 254 39 0 chr3 169328917 169329047 -48708111 + (TTTAA)n Simple_repeat Simple_repeat 1 135 0 2607 160 5 19 chr3 169329782 169330214 -48706944 + MSTC LTR MaLR 3 428 0 888 134 0 8 chr3 169330410 169330544 -48706614 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr3 169330954 169330975 -48706183 + AT_rich Low_complexity Low_complexity 1 21 0 586 225 75 12 chr3 169331924 169332084 -48705074 + L2 LINE L2 2071 2240 -1074 199 368 59 13 chr3 169332910 169333062 -48704096 - MIR SINE MIR -2 260 102 2122 116 20 0 chr3 169333304 169333596 -48703562 - AluSx SINE Alu -14 298 1 2197 85 0 14 chr3 169333685 169333980 -48703178 - AluY SINE Alu -20 291 1 238 180 40 0 chr3 169334393 169334443 -48702715 + (TATG)n Simple_repeat Simple_repeat 2 53 0 922 96 0 0 chr3 169334968 169335083 -48702075 - AluSq/x SINE Alu -198 115 1 236 272 99 25 chr3 169336086 169336248 -48700910 - L1ME LINE L1 -223 5898 5725 21 0 0 0 chr3 169336281 169336302 -48700856 + AT_rich Low_complexity Low_complexity 1 21 0 659 263 145 26 chr3 169336917 169337145 -48700013 + MIR SINE MIR 2 256 -6 1825 168 69 6 chr3 169338765 169339098 -48698060 - MLT1A1 LTR MaLR -11 354 1 2052 129 0 20 chr3 169339838 169340140 -48697018 + AluSx SINE Alu 1 296 -16 266 155 35 0 chr3 169340491 169340549 -48696609 + CT-rich Low_complexity Low_complexity 3 62 0 726 299 62 37 chr3 169341715 169341956 -48695202 + MIR SINE MIR 11 257 -5 521 208 261 13 chr3 169342413 169342639 -48694519 + L1MD3 LINE L1 7710 7991 -4 222 37 0 0 chr3 169342774 169342801 -48694357 + (TG)n Simple_repeat Simple_repeat 2 28 0 253 314 39 34 chr3 169343161 169343365 -48693793 - L1ME3A LINE L1 -220 5950 5746 22 35 0 0 chr3 169343638 169343667 -48693491 + AT_rich Low_complexity Low_complexity 1 29 0 574 198 165 28 chr3 169345867 169346049 -48691109 - MER113 DNA MER1_type? -105 416 210 304 323 55 16 chr3 169346141 169346268 -48690890 - L1MC4 LINE L1 -118 7924 7793 435 256 47 0 chr3 169346437 169346628 -48690530 - L1MC4a LINE L1 -1798 6010 5811 245 119 68 51 chr3 169346630 169346689 -48690469 - L1MC5 LINE L1 -479 7482 7423 560 228 21 7 chr3 169346709 169346854 -48690304 - L1MC5 LINE L1 -744 7217 7071 683 224 206 0 chr3 169346867 169347095 -48690063 - L1MC5 LINE L1 -1051 6910 6636 369 130 29 0 chr3 169347158 169347227 -48689931 + L1MA10 LINE L1 6253 6323 -11 1485 273 67 44 chr3 169347328 169347922 -48689236 - L1MC5 LINE L1 -1839 5969 5362 311 272 54 0 chr3 169348562 169348654 -48688504 + L1ME LINE L1 5754 5850 -271 252 318 136 47 chr3 169350417 169350675 -48686483 - L2 LINE L2 -854 2460 2180 508 218 95 39 chr3 169350685 169350864 -48686294 + MER20B DNA MER1_type 1 189 -594 548 277 141 21 chr3 169353136 169353378 -48683780 + HAL1 LINE L1 6 276 -2231 186 43 0 0 chr3 169353384 169353407 -48683751 + (ATTG)n Simple_repeat Simple_repeat 2 24 0 365 280 216 8 chr3 169353550 169353814 -48683344 + HAL1 LINE L1 307 625 -1882 405 0 0 0 chr3 169353816 169353861 -48683297 + (TG)n Simple_repeat Simple_repeat 2 46 0 361 265 83 38 chr3 169354053 169354185 -48682973 + MIR SINE MIR 91 228 -34 4992 139 32 2 chr3 169355224 169356034 -48681124 + MER6 DNA MER2_type 32 865 0 240 346 0 13 chr3 169356034 169356112 -48681046 - MIR SINE MIR -108 154 78 23 0 0 0 chr3 169356224 169356247 -48680911 + AT_rich Low_complexity Low_complexity 1 23 0 35 0 0 0 chr3 169357086 169357121 -48680037 + AT_rich Low_complexity Low_complexity 1 35 0 2056 101 16 45 chr3 169358757 169359065 -48678093 - AluY SINE Alu -12 299 1 407 257 0 48 chr3 169359909 169360014 -48677144 - L2 LINE L2 -4 3309 3210 22 35 0 0 chr3 169360648 169360677 -48676481 + AT_rich Low_complexity Low_complexity 1 29 0 285 290 0 0 chr3 169360877 169360939 -48676219 - MIR SINE MIR -110 98 37 1850 162 13 13 chr3 169361010 169361318 -48675840 + AluJb SINE Alu 1 308 -4 264 289 21 14 chr3 169361417 169361559 -48675599 - L1MC4a LINE L1 -1799 6009 5867 277 200 0 46 chr3 169361792 169361857 -48675301 - MIR SINE MIR -64 144 83 1854 189 60 51 chr3 169361965 169362416 -48674742 - MER82 DNA MER2_type -1 652 198 1218 159 47 13 chr3 169362433 169362666 -48674492 - MER82 DNA MER2_type -405 248 8 2005 143 10 7 chr3 169362795 169363103 -48674055 + AluJb SINE Alu 1 309 -3 765 291 45 32 chr3 169363225 169363472 -48673686 + MIR SINE MIR 1 250 -12 392 167 0 14 chr3 169363512 169363584 -48673574 - MER94 DNA DNA -62 72 2 2264 140 12 25 chr3 169363909 169364309 -48672849 - L1MC1 LINE L1 -5 6328 5934 759 279 57 29 chr3 169364358 169364673 -48672485 - L2 LINE L2 -978 2336 2013 1926 164 3 0 chr3 169365128 169365433 -48671725 + AluSx SINE Alu 1 306 -6 568 332 81 3 chr3 169366805 169367103 -48670055 - MER102a DNA MER1_type -9 321 1 234 0 0 0 chr3 169368473 169368499 -48668659 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 670 238 0 8 chr3 169369536 169369658 -48667500 - FLAM_A SINE Alu -12 121 1 2172 116 0 10 chr3 169370636 169370946 -48666212 + AluSg SINE Alu 1 307 -3 2774 163 57 10 chr3 169370946 169371530 -48665628 - L1MB8 LINE L1 -5 6173 5563 204 364 34 8 chr3 169371648 169371766 -48665392 + L2 LINE L2 2737 2857 -457 428 266 8 32 chr3 169372252 169372376 -48664782 + L2 LINE L2 3190 3310 -3 2246 179 87 11 chr3 169372541 169372989 -48664169 - MLT1D LTR MaLR 0 505 24 195 270 63 16 chr3 169374674 169374737 -48662421 - L2 LINE L2 0 3272 3207 193 160 20 20 chr3 169374765 169374815 -48662343 + (TA)n Simple_repeat Simple_repeat 1 50 0 307 278 68 135 chr3 169374816 169375068 -48662090 - L2 LINE L2 -67 3205 2971 298 224 90 0 chr3 169375502 169375569 -48661589 + MIR SINE MIR 99 171 -91 2548 61 0 10 chr3 169376675 169376987 -48660171 - AluY SINE Alu -2 309 1 1876 258 51 60 chr3 169377855 169378654 -48658504 - MER21B LTR ERV1 -58 805 14 291 71 0 0 chr3 169378840 169378882 -48658276 + (CA)n Simple_repeat Simple_repeat 2 43 0 661 207 6 10 chr3 169378919 169379084 -48658074 + L1M3 LINE L1 5628 5795 -356 204 200 18 18 chr3 169379092 169379147 -48658011 + (TA)n Simple_repeat Simple_repeat 2 56 0 2043 144 0 3 chr3 169379194 169379493 -48657665 + AluSx SINE Alu 1 298 -14 2273 91 13 0 chr3 169379602 169379900 -48657258 - AluSc SINE Alu -2 307 6 583 143 0 0 chr3 169380123 169380207 -48656951 - AluJ/FLAM SINE Alu -224 88 5 27 29 0 0 chr3 169380246 169380280 -48656878 + AT_rich Low_complexity Low_complexity 1 34 0 566 195 71 5 chr3 169381604 169381766 -48655392 - MER20 DNA MER1_type 0 219 16 2304 106 0 0 chr3 169382050 169382352 -48654806 - AluY SINE Alu -9 302 1 213 297 136 84 chr3 169382380 169382535 -48654623 - MER5B DNA MER1_type 0 178 16 26 50 0 0 chr3 169382715 169382755 -48654403 + AT_rich Low_complexity Low_complexity 1 40 0 1990 133 14 0 chr3 169382945 169383248 -48653910 + AluSx SINE Alu 1 307 0 393 198 93 0 chr3 169384413 169384499 -48652659 + MIR SINE MIR 39 132 -76 22 0 0 0 chr3 169384998 169385020 -48652138 + AT_rich Low_complexity Low_complexity 1 22 0 390 165 72 0 chr3 169385983 169386080 -48651078 - MER112 DNA MER1_type -140 120 17 1504 146 88 37 chr3 169386548 169386843 -48650315 - AluJb SINE Alu -2 310 1 767 265 37 29 chr3 169386918 169387163 -48649995 - MIR SINE MIR -3 259 13 389 347 198 20 chr3 169387684 169388033 -48649125 - L2 LINE L2 0 3272 2862 880 307 163 44 chr3 169388151 169389062 -48648096 - L2 LINE L2 -675 2639 1621 5111 103 14 0 chr3 169390822 169391595 -48645563 + L1PB2 LINE L1 5364 6147 -4 17663 176 70 39 chr3 169391639 169393720 -48643438 - L1MA1 LINE L1 -2 7719 5703 13631 32 5 0 chr3 169393720 169396130 -48641028 - L1PA4 LINE L1 -4 6151 3736 17663 176 70 39 chr3 169396130 169397037 -48640121 - L1MA1 LINE L1 -2018 5703 4825 1917 136 29 16 chr3 169397037 169397345 -48639813 - AluSx SINE Alu 0 312 1 17663 176 70 39 chr3 169397345 169399032 -48638126 - L1MA1 LINE L1 -2896 4825 3191 595 145 8 113 chr3 169399032 169399092 -48638066 - FLAM_C SINE Alu -185 127 85 6058 106 19 1 chr3 169399092 169400985 -48636173 + L1PA11 LINE L1 4254 6171 -3 595 145 8 113 chr3 169400985 169401048 -48636110 - FLAM_C SINE Alu -227 85 17 17663 176 70 39 chr3 169401048 169401479 -48635679 - L1MA1 LINE L1 -4530 3191 2775 2310 116 0 3 chr3 169401479 169401782 -48635376 - AluSx SINE Alu -10 302 1 17663 176 70 39 chr3 169401782 169403130 -48634028 - L1MA1 LINE L1 -4946 2775 1469 1548 95 0 5 chr3 169403130 169403330 -48633828 - AluSq SINE Alu -114 199 1 17663 176 70 39 chr3 169403330 169403375 -48633783 - L1MA1 LINE L1 -6252 1469 1427 2128 110 7 23 chr3 169403375 169403675 -48633483 + AluSx SINE Alu 1 295 -17 17663 176 70 39 chr3 169403675 169404454 -48632704 - L1MA1 LINE L1 -6294 1427 18 258 156 0 0 chr3 169404557 169404602 -48632556 + (TG)n Simple_repeat Simple_repeat 2 46 0 1645 180 26 36 chr3 169404772 169405078 -48632080 + AluJo SINE Alu 1 303 -9 1753 136 52 78 chr3 169405246 169405591 -48631567 - MER1B DNA MER1_type -1 336 1 517 299 87 7 chr3 169405618 169405906 -48631252 - L1ME LINE L1 -401 5720 5410 234 0 0 0 chr3 169405932 169405958 -48631200 + (TG)n Simple_repeat Simple_repeat 2 27 0 289 281 91 24 chr3 169406072 169406282 -48630876 - MARNA DNA Mariner -25 561 338 745 192 0 0 chr3 169406368 169406493 -48630665 + FLAM_C SINE Alu 1 125 -18 557 295 174 33 chr3 169406755 169407420 -48629738 - L2 LINE L2 -337 2977 2219 328 295 224 35 chr3 169407744 169408228 -48628930 + L2 LINE L2 2700 3270 -2 1518 176 30 52 chr3 169408251 169408615 -48628543 - MLT1A1 LTR MaLR 0 365 10 21 0 0 0 chr3 169408862 169408883 -48628275 + AT_rich Low_complexity Low_complexity 1 21 0 270 73 0 0 chr3 169409194 169409235 -48627923 + (T)n Simple_repeat Simple_repeat 1 41 0 7858 17 0 0 chr3 169409251 169410244 -48626914 - L1PA2 LINE L1 -2 6153 5161 393 272 63 76 chr3 169411524 169411682 -48625476 - MIR3 SINE MIR -48 160 5 2266 111 16 0 chr3 169412028 169412335 -48624823 + AluSq SINE Alu 1 312 -1 2082 40 0 4 chr3 169412411 169412659 -48624499 + AluY SINE Alu 65 311 0 205 312 97 14 chr3 169412823 169412959 -48624199 - MIR SINE MIR -64 144 40 189 260 39 39 chr3 169413149 169413226 -48623932 - L2 LINE L2 -208 3064 2988 344 258 17 42 chr3 169413548 169413668 -48623490 + L1MC4a LINE L1 5158 5274 -872 798 153 43 12 chr3 169413696 169413859 -48623299 + MLT1C LTR MaLR 250 417 -50 1153 285 57 7 chr3 169414006 169414431 -48622727 + L1MC4a LINE L1 5449 5894 -1914 294 273 30 10 chr3 169414547 169414646 -48622512 - L2 LINE L2 -880 2434 2334 622 271 73 0 chr3 169414711 169414888 -48622270 - MIR SINE MIR -56 206 17 812 311 29 4 chr3 169415094 169415335 -48621823 + MIR SINE MIR 7 253 -9 207 336 66 7 chr3 169415364 169415501 -48621657 - L2 LINE L2 -1465 1849 1705 2800 185 30 25 chr3 169415988 169416594 -48620564 + L1MB5 LINE L1 5566 6174 0 219 366 13 20 chr3 169417484 169417637 -48619521 - L3b LINE CR1 -255 1328 1177 298 253 23 11 chr3 169418944 169419031 -48618127 - MIR SINE MIR -38 224 137 324 0 0 0 chr3 169419376 169419412 -48617746 + (CA)n Simple_repeat Simple_repeat 2 37 0 2176 94 49 0 chr3 169420008 169420296 -48616862 - AluY SINE Alu -9 302 1 2301 87 3 7 chr3 169420852 169421152 -48616006 - AluSp SINE Alu -14 299 1 303 93 0 0 chr3 169421152 169421195 -48615963 + (T)n Simple_repeat Simple_repeat 1 43 0 967 179 0 0 chr3 169421923 169422079 -48615079 - FAM SINE Alu -17 168 13 955 158 9 50 chr3 169422267 169422488 -48614670 - MER20 DNA MER1_type -6 213 2 487 113 21 72 chr3 169422894 169422991 -48614167 - MLT1C LTR MaLR 0 467 376 403 269 111 0 chr3 169422992 169423100 -48614058 - MIR SINE MIR -112 150 31 613 207 7 15 chr3 169424107 169424242 -48612916 + MIR SINE MIR 88 221 -41 817 232 24 91 chr3 169425357 169425546 -48611612 - MIR SINE MIR -23 239 70 2096 103 30 17 chr3 169425546 169425846 -48611312 - AluSc SINE Alu -5 304 1 817 232 24 91 chr3 169425846 169425910 -48611248 - MIR SINE MIR -192 70 3 476 301 61 90 chr3 169427226 169427463 -48609695 - L1M4 LINE L1 -1167 4979 4762 1976 62 11 29 chr3 169427463 169427737 -48609421 - AluY SINE Alu -2 309 41 476 301 61 90 chr3 169427737 169427977 -48609181 - L1M4 LINE L1 -1384 4762 4516 2006 104 37 0 chr3 169429985 169430254 -48606904 + AluSx SINE Alu 1 279 -33 315 0 0 0 chr3 169430254 169430289 -48606869 + (CA)n Simple_repeat Simple_repeat 1 35 0 2365 247 125 49 chr3 169431451 169431965 -48605193 - L2 LINE L2 -2138 1176 703 438 20 0 0 chr3 169431965 169432016 -48605142 + (GA)n Simple_repeat Simple_repeat 1 51 0 384 22 0 0 chr3 169432015 169432060 -48605098 + (TG)n Simple_repeat Simple_repeat 1 45 0 * 2365 247 125 49 chr3 169432016 169432609 -48604549 - L2 LINE L2 -2611 703 32 2347 179 31 21 chr3 169434248 169434728 -48602430 - MER31A LTR ERV1 0 485 1 4028 105 61 2 chr3 169434902 169435541 -48601617 + Tigger1 DNA MER2_type 1465 2141 -277 414 271 8 30 chr3 169437230 169437363 -48599795 - MER94 DNA DNA -4 130 1 41 72 0 0 chr3 169437363 169437446 -48599712 + AT_rich Low_complexity Low_complexity 1 83 0 312 242 55 55 chr3 169437478 169437569 -48599589 - MIR SINE MIR -99 109 19 2124 139 0 3 chr3 169437739 169438048 -48599110 - AluSx SINE Alu -4 308 1 357 347 32 16 chr3 169438502 169438626 -48598532 - L2 LINE L2 -4 3309 3184 590 300 55 58 chr3 169438757 169439087 -48598071 - L2 LINE L2 -148 3165 2837 281 281 104 10 chr3 169439223 169439319 -48597839 + MER5C DNA MER1_type 220 324 0 447 226 116 44 chr3 169439420 169439601 -48597557 - L2 LINE L2 -691 2623 2430 183 322 132 31 chr3 169439987 169440214 -48596944 + L2 LINE L2 2402 2651 -663 2226 80 14 0 chr3 169442758 169443046 -48594112 - AluSp SINE Alu -21 292 1 198 0 0 0 chr3 169443682 169443704 -48593454 + (GA)n Simple_repeat Simple_repeat 2 23 0 304 333 48 30 chr3 169443907 169444072 -48593086 + MIR SINE MIR 90 257 -5 201 415 43 11 chr3 169444049 169444143 -48593015 - L2 LINE L2 -55 3217 3121 * 400 278 74 0 chr3 169444170 169444278 -48592880 - L2 LINE L2 0 3313 3198 450 225 12 38 chr3 169444426 169444586 -48592572 + L1ME3 LINE L1 5868 6023 -139 221 292 101 11 chr3 169444973 169445062 -48592096 + MIR SINE MIR 153 249 -13 22 70 0 0 chr3 169445207 169445250 -48591908 + AT_rich Low_complexity Low_complexity 1 43 0 307 320 51 34 chr3 169446056 169446234 -48590924 + MIR SINE MIR 31 211 -51 2139 69 80 0 chr3 169446658 169446934 -48590224 - AluY SINE Alu -13 298 1 1843 126 0 36 chr3 169448974 169449252 -48587906 - AluSx SINE Alu -44 268 1 243 0 0 0 chr3 169449268 169449295 -48587863 + (A)n Simple_repeat Simple_repeat 1 27 0 2119 198 90 57 chr3 169450931 169451532 -48585626 - MLT1E3 LTR MaLR -3 621 1 578 307 5 14 chr3 169452411 169452623 -48584535 - LTR16A LTR ERVL -225 225 16 777 301 48 23 chr3 169452642 169453121 -48584037 + L1M4 LINE L1 2332 2822 -3324 4393 171 102 11 chr3 169453163 169454374 -48582784 + L1MC2 LINE L1 5017 6344 0 1284 236 86 18 chr3 169454370 169455235 -48581923 + L1MDa LINE L1 1985 2896 -3644 * 36880 75 11 7 chr3 169455329 169461444 -48575714 + L1PA5 LINE L1 13 6154 0 1467 259 161 15 chr3 169461476 169462537 -48574621 + L1MDa LINE L1 3033 4248 -2292 870 165 270 29 chr3 169462540 169462885 -48574273 + MSTC LTR MaLR 1 428 0 566 226 36 18 chr3 169463011 169463054 -48574104 + Zaphod DNA AcHobo 3861 3902 -129 1900 141 40 0 chr3 169463054 169463331 -48573827 - AluJb SINE Alu -24 288 1 566 226 36 18 chr3 169463331 169463455 -48573703 + Zaphod DNA AcHobo 3902 4031 0 2949 181 51 40 chr3 169464241 169464900 -48572258 + L1ME1 LINE L1 5378 6049 -117 2253 85 0 20 chr3 169464900 169465194 -48571964 + AluSg SINE Alu 1 288 -22 2949 181 51 40 chr3 169465194 169465293 -48571865 + L1ME1 LINE L1 6049 6145 -21 27 0 0 0 chr3 169465297 169465324 -48571834 + AT_rich Low_complexity Low_complexity 1 27 0 1968 160 0 3 chr3 169466744 169467074 -48570084 + AluJb SINE Alu 1 312 0 521 289 91 13 chr3 169467082 169467314 -48569844 - MLT1L LTR MaLR -39 576 327 322 301 93 41 chr3 169467340 169467609 -48569549 - MLT1L LTR MaLR -332 283 1 502 223 277 5 chr3 169467737 169467825 -48569333 - MIR SINE MIR 0 262 199 2112 139 9 12 chr3 169467825 169468170 -48568988 + MER2 DNA MER2_type 1 344 0 502 223 277 5 chr3 169468170 169468283 -48568875 - MIR SINE MIR -63 199 6 219 88 0 0 chr3 169468698 169468732 -48568426 + (TA)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr3 169471084 169471106 -48566052 + AT_rich Low_complexity Low_complexity 1 22 0 2211 113 0 10 chr3 169471197 169471499 -48565659 - AluSx SINE Alu -13 299 1 786 176 0 122 chr3 169471673 169471861 -48565297 - AluJb SINE Alu -11 301 137 483 242 163 26 chr3 169471862 169472052 -48565106 - MER58A DNA MER1_type -7 217 2 397 165 13 13 chr3 169472341 169472420 -48564738 - MER20 DNA MER1_type -140 79 1 744 185 76 0 chr3 169473738 169473895 -48563263 + MER58A DNA MER1_type 47 215 -9 708 271 200 31 chr3 169474233 169474787 -48562371 - HAL1b LINE L1 -202 1146 499 23 33 0 0 chr3 169476707 169476737 -48560421 + AT_rich Low_complexity Low_complexity 1 30 0 1991 138 3 3 chr3 169476902 169477199 -48559959 - AluSx SINE Alu -15 297 1 236 304 45 27 chr3 169478310 169478422 -48558736 + L1ME3A LINE L1 596 709 -5410 338 227 138 64 chr3 169478489 169478692 -48558466 + L1ME3A LINE L1 3527 3744 -2385 356 282 120 61 chr3 169478697 169479466 -48557692 + L1ME3A LINE L1 3779 4592 -1537 670 186 0 24 chr3 169479544 169479668 -48557490 - FRAM SINE Alu -20 156 36 322 290 97 39 chr3 169479668 169479978 -48557180 + L1ME3A LINE L1 4663 4990 -1139 1878 107 18 39 chr3 169480097 169480377 -48556781 + AluSx SINE Alu 3 276 -36 243 0 0 0 chr3 169480383 169480410 -48556748 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 670 232 106 35 chr3 169480519 169480790 -48556368 + L1ME3A LINE L1 5309 5602 -527 683 154 0 0 chr3 169480790 169480900 -48556258 + AluSg/x SINE Alu 201 310 0 289 262 58 84 chr3 169481079 169481270 -48555888 + L1ME3A LINE L1 5915 6100 -53 28 29 0 0 chr3 169481701 169481736 -48555422 + AT_rich Low_complexity Low_complexity 1 35 0 298 256 0 35 chr3 169482086 169482233 -48554925 - MIR SINE MIR 0 262 35 2027 107 23 17 chr3 169483075 169483374 -48553784 + AluSx SINE Alu 1 301 -11 2852 3 0 3 chr3 169483573 169483884 -48553274 + AluYa5 SINE Alu 1 310 -1 957 265 65 12 chr3 169484734 169484979 -48552179 + MIR SINE MIR 5 262 0 315 0 0 0 chr3 169485449 169485484 -48551674 + (CA)n Simple_repeat Simple_repeat 2 36 0 1740 172 0 7 chr3 169486020 169486310 -48550848 + AluJo SINE Alu 1 288 -24 304 141 179 0 chr3 169488162 169488240 -48548918 + LTR57-int LTR ERVL 1233 1324 -4019 1576 174 27 24 chr3 169488502 169488795 -48548363 - AluJb SINE Alu -17 295 2 2475 39 0 0 chr3 169488915 169489224 -48547934 + AluY SINE Alu 1 309 0 266 250 73 22 chr3 169489662 169489798 -48547360 + L1MC5 LINE L1 7303 7445 -516 254 276 141 12 chr3 169489942 169490112 -48547046 + L1MC5 LINE L1 7609 7800 -161 2230 112 0 0 chr3 169490153 169490447 -48546711 + AluSg1 SINE Alu 1 294 -15 23 33 0 0 chr3 169491278 169491308 -48545850 + AT_rich Low_complexity Low_complexity 1 30 0 2059 115 7 0 chr3 169491357 169491645 -48545513 + AluY SINE Alu 1 290 -21 23 0 0 0 chr3 169491645 169491668 -48545490 + AT_rich Low_complexity Low_complexity 1 23 0 1997 133 3 3 chr3 169491712 169492006 -48545152 + AluSx SINE Alu 1 294 -18 336 349 95 18 chr3 169492136 169492305 -48544853 + MER5A DNA MER1_type 8 189 0 2038 132 10 7 chr3 169492787 169493090 -48544068 - AluSx SINE Alu -8 304 1 317 310 11 58 chr3 169494175 169494349 -48542809 - MER5B DNA MER1_type -10 168 3 226 246 35 52 chr3 169494363 169494424 -48542734 - MIR SINE MIR -110 98 44 357 254 193 9 chr3 169494625 169494739 -48542419 + MIR SINE MIR 2 136 -72 477 204 99 86 chr3 169495467 169495518 -48541640 - MER5B DNA MER1_type 0 178 129 2008 130 3 7 chr3 169495518 169495811 -48541347 + AluSx SINE Alu 1 292 -20 477 204 99 86 chr3 169495811 169495921 -48541237 - MER5B DNA MER1_type -49 129 15 464 269 94 6 chr3 169497016 169497176 -48539982 + MIR SINE MIR 77 250 -12 22 0 0 0 chr3 169497402 169497424 -48539734 + AT_rich Low_complexity Low_complexity 1 22 0 1559 185 25 0 chr3 169498213 169498494 -48538664 + AluJo SINE Alu 2 289 -23 4196 170 69 12 chr3 169499874 169500940 -48536218 + L1PB4 LINE L1 5019 6144 -12 955 172 109 10 chr3 169501290 169501482 -48535676 - MER46A DNA MER2_type 0 236 26 1781 190 0 0 chr3 169501628 169501928 -48535230 + AluJb SINE Alu 1 300 -12 24 0 0 0 chr3 169503092 169503116 -48534042 + AT_rich Low_complexity Low_complexity 1 24 0 2315 94 10 3 chr3 169503223 169503530 -48533628 + AluSc SINE Alu 1 309 0 354 45 0 0 chr3 169503531 169503575 -48533583 + (TA)n Simple_repeat Simple_repeat 2 45 0 448 238 197 40 chr3 169503684 169503852 -48533306 - L2 LINE L2 -4 3309 3096 222 37 0 0 chr3 169503852 169503879 -48533279 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 448 238 197 40 chr3 169503879 169503933 -48533225 - L2 LINE L2 -217 3096 3052 23 54 0 0 chr3 169504000 169504037 -48533121 + AT_rich Low_complexity Low_complexity 1 37 0 182 264 44 55 chr3 169504925 169505016 -48532142 + MIR SINE MIR 160 249 -13 2024 113 49 3 chr3 169505263 169505547 -48531611 + AluSg SINE Alu 1 297 -13 387 0 0 0 chr3 169505555 169505598 -48531560 + (TA)n Simple_repeat Simple_repeat 2 44 0 22 56 0 0 chr3 169505781 169505817 -48531341 + AT_rich Low_complexity Low_complexity 1 36 0 1878 150 0 0 chr3 169506105 169506379 -48530779 + AluJo SINE Alu 12 285 -27 357 335 138 0 chr3 169506520 169506687 -48530471 + MIR SINE MIR 48 237 -25 180 0 0 0 chr3 169508033 169508053 -48529105 + (CAAAA)n Simple_repeat Simple_repeat 4 23 0 239 202 242 24 chr3 169510535 169510659 -48526499 + MER112 DNA MER1_type 17 167 -93 262 324 127 32 chr3 169512054 169512369 -48524789 + L2 LINE L2 1313 1657 -1657 414 225 0 0 chr3 169512416 169512496 -48524662 + MLT1I LTR MaLR 324 403 -6 883 302 61 87 chr3 169512508 169513659 -48523499 + L2 LINE L2 1637 2757 -557 365 294 59 20 chr3 169513735 169513939 -48523219 - MER112 DNA MER1_type -48 212 1 250 379 120 46 chr3 169513983 169514334 -48522824 + L2 LINE L2 2891 3267 -5 1645 127 116 8 chr3 169514374 169514641 -48522517 + AluSg1 SINE Alu 1 296 -13 449 316 189 10 chr3 169515010 169515307 -48521851 - L2 LINE L2 -567 2747 2398 2427 75 0 0 chr3 169515750 169516045 -48521113 + AluSx SINE Alu 1 295 -17 25 31 0 0 chr3 169516144 169516176 -48520982 + AT_rich Low_complexity Low_complexity 1 32 0 257 227 82 41 chr3 169518376 169518473 -48518685 + MER34 LTR ERV1 437 537 -5 419 297 102 71 chr3 169518762 169519164 -48517994 - L2 LINE L2 -618 2696 2275 2224 113 13 0 chr3 169519164 169519466 -48517692 + AluSx SINE Alu 1 306 -6 419 297 102 71 chr3 169519466 169519555 -48517603 - L2 LINE L2 -1039 2275 2190 751 235 60 60 chr3 169519679 169519930 -48517228 + MLT1A2 LTR MaLR 1 251 -123 1481 186 28 38 chr3 169519934 169520225 -48516933 - AluJo SINE Alu -18 294 7 4461 155 86 14 chr3 169520230 169521058 -48516100 + MER4D LTR ERV1 7 893 -10 740 203 8 0 chr3 169521065 169521198 -48515960 + MLT1A2 LTR MaLR 237 370 -4 253 124 22 169 chr3 169521282 169521314 -48515844 + MLT1D LTR MaLR 8 43 -462 1891 171 0 19 chr3 169521314 169521624 -48515534 - AluJb SINE Alu -8 304 1 253 124 22 169 chr3 169521624 169521680 -48515478 + MLT1D LTR MaLR 43 83 -422 1937 198 16 4 chr3 169521701 169522165 -48514993 + MLT2B1 LTR ERVL 1 520 0 1008 214 79 16 chr3 169522168 169522420 -48514738 + MLT1D LTR MaLR 113 380 -125 651 173 0 0 chr3 169522414 169522518 -48514640 + U13 snRNA snRNA 1 104 0 * 530 207 76 21 chr3 169522538 169522683 -48514475 + MLT1D LTR MaLR 353 505 0 926 221 65 59 chr3 169523561 169523851 -48513307 - MLT1G1 LTR MaLR -259 336 45 1315 153 13 8 chr3 169523851 169524087 -48513071 + AluJo SINE Alu 72 308 -4 2161 116 26 0 chr3 169524566 169524868 -48512290 + AluSx SINE Alu 1 310 -2 534 304 68 41 chr3 169525504 169525797 -48511361 + MLT1J1 LTR MaLR 1 301 -145 240 284 49 49 chr3 169525845 169525947 -48511211 - MLT2E LTR ERVL -490 138 37 1148 296 81 11 chr3 169526100 169526693 -48510465 + L2 LINE L2 2505 3145 -168 1850 234 35 40 chr3 169526801 169527374 -48509784 + MER77 LTR ERV1 53 673 -7 189 296 0 51 chr3 169527454 169527552 -48509606 + L2 LINE L2 3221 3313 0 678 278 11 21 chr3 169531835 169532026 -48505132 + MER5A DNA MER1_type 1 189 0 396 290 11 0 chr3 169532198 169532291 -48504867 - MER81 DNA DNA 0 114 21 2425 67 0 10 chr3 169532474 169532786 -48504372 - AluY SINE Alu -2 309 1 2209 111 0 0 chr3 169533416 169533714 -48503444 - AluSg SINE Alu -12 298 1 499 310 156 40 chr3 169533925 169533987 -48503171 + L1MC4a LINE L1 4104 4157 -1989 503 18 0 0 chr3 169533987 169534044 -48503114 + (TA)n Simple_repeat Simple_repeat 2 58 0 499 310 156 40 chr3 169534044 169535094 -48502064 + L1MC4a LINE L1 4157 5398 -748 1921 139 10 13 chr3 169535106 169535408 -48501750 - AluSx SINE Alu -11 301 1 294 297 65 39 chr3 169535632 169535864 -48501294 + L1MC4a LINE L1 5693 5930 -1878 1460 188 6 67 chr3 169536383 169536713 -48500445 + AluJb SINE Alu 1 310 -2 1572 239 51 18 chr3 169537160 169537612 -48499546 + MLT1C LTR MaLR 1 467 0 363 308 30 15 chr3 169537715 169537848 -48499310 + L2 LINE L2 3137 3271 -1 479 280 48 8 chr3 169538561 169538686 -48498472 - MIR SINE MIR -63 145 16 1970 144 16 3 chr3 169539289 169539595 -48497563 - AluSx SINE Alu -2 310 1 390 298 0 68 chr3 169539668 169539829 -48497329 - MIR SINE MIR -10 252 103 311 319 49 48 chr3 169539835 169539894 -48497264 - MIR SINE MIR -5 257 200 2612 109 8 11 chr3 169539894 169540270 -48496888 - THE1C LTR MaLR 0 375 1 311 319 49 48 chr3 169540270 169540457 -48496701 - MIR SINE MIR -62 200 8 201 383 0 0 chr3 169540692 169540752 -48496406 + MIR3 SINE MIR 104 163 -45 * 469 207 0 0 chr3 169540730 169540817 -48496341 + MIR SINE MIR 176 262 0 197 342 139 0 chr3 169540823 169540902 -48496256 - L2 LINE L2 -830 2484 2395 4834 249 40 28 chr3 169540980 169542639 -48494519 + L1MCa LINE L1 2437 4115 -2311 410 216 11 0 chr3 169542639 169542727 -48494431 - AluJb SINE Alu -11 301 213 1155 188 5 5 chr3 169542727 169542929 -48494229 + AluJb SINE Alu 108 309 -3 2783 249 33 30 chr3 169542930 169543458 -48493700 + L1MCa LINE L1 4444 4978 -1448 1926 158 30 3 chr3 169543458 169543793 -48493365 + MER2 DNA MER2_type 1 344 0 2783 249 33 30 chr3 169543793 169544263 -48492895 + L1MCa LINE L1 4978 5445 -981 462 227 10 10 chr3 169544281 169544378 -48492780 - MER5A DNA MER1_type -83 106 10 219 221 59 15 chr3 169546945 169547013 -48490145 - MIR SINE MIR -36 226 156 228 217 0 0 chr3 169547013 169547059 -48490099 + MER46C DNA MER2_type 1 46 -292 296 297 93 34 chr3 169547082 169547200 -48489958 - L3 LINE CR1 -257 1320 1196 248 274 176 0 chr3 169547319 169547421 -48489737 + L2 LINE L2 3183 3302 -11 2076 114 0 0 chr3 169547747 169548027 -48489131 - AluSg SINE Alu -30 280 1 457 299 25 15 chr3 169548703 169548900 -48488258 + L1MB8 LINE L1 5941 6139 -39 623 122 11 0 chr3 169548904 169548994 -48488164 - THE1C LTR MaLR 0 375 285 10084 37 21 2 chr3 169549016 169551001 -48486157 + L1PA3 LINE L1 4124 6153 -2 1530 288 43 20 chr3 169551936 169552503 -48484655 + MLT2E LTR ERVL 3 628 0 1078 244 0 12 chr3 169552928 169553170 -48483988 + Charlie1a DNA MER1_type 51 289 -1166 656 236 0 0 chr3 169553174 169553301 -48483857 - MIR SINE MIR -104 158 32 295 308 13 0 chr3 169553323 169553401 -48483757 - L2 LINE L2 0 3313 3235 340 245 0 20 chr3 169553463 169553565 -48483593 + HAL1b LINE L1 1242 1341 -7 308 328 58 35 chr3 169554566 169554737 -48482421 - MER5B DNA MER1_type -3 175 1 2197 51 0 0 chr3 169554756 169555010 -48482148 + AluY SINE Alu 50 303 -8 324 207 0 0 chr3 169555222 169555280 -48481878 + MER69 DNA AcHobo 10 67 -1159 416 231 39 31 chr3 169555441 169555571 -48481587 + MER69 DNA AcHobo 2396 2526 0 337 343 152 14 chr3 169555702 169555979 -48481179 - L2 LINE L2 -341 2973 2659 569 187 21 126 chr3 169555980 169556257 -48480901 - MSTC LTR MaLR 0 396 128 855 190 18 197 chr3 169556257 169556537 -48480621 + LTR28 LTR ERV1 1 887 -841 565 218 19 70 chr3 169556542 169556698 -48480460 + MER52A LTR ERV1 1080 1227 -528 691 183 8 16 chr3 169556891 169557017 -48480141 - MSTC LTR MaLR -303 125 1 7384 207 39 50 chr3 169557017 169558769 -48478389 - MSTC-int LTR MaLR 0 1735 4 4723 166 30 9 chr3 169558770 169559654 -48477504 + MER4D LTR ERV1 1 903 0 682 185 54 0 chr3 169559662 169559792 -48477366 - MLT1A1 LTR MaLR -2 363 227 5138 70 36 0 chr3 169559805 169560502 -48476656 + LTR30 LTR ERV1 1 722 0 26023 89 11 8 chr3 169560502 169563956 -48473202 + HERV30 LTR ERV1 1 3462 -4795 6318 111 24 2 chr3 169563949 169564844 -48472314 + HERV30 LTR ERV1 7344 8257 0 * 2993 51 31 3 chr3 169564844 169565234 -48471924 + LTR30 LTR ERV1 1 401 -321 377 120 0 152 chr3 169565243 169565335 -48471823 - MLT1A1 LTR MaLR -350 78 1 813 280 144 54 chr3 169565335 169566017 -48471141 - L2 LINE L2 -652 2662 1920 449 207 12 0 chr3 169566552 169566634 -48470524 + L2 LINE L2 3231 3313 0 207 191 0 0 chr3 169566673 169566715 -48470443 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 1904 155 6 22 chr3 169566857 169567174 -48469984 - AluSx SINE Alu 0 312 1 2538 192 11 36 chr3 169568361 169568883 -48468275 + MLT2B1 LTR ERVL 12 520 0 486 300 147 0 chr3 169569480 169569650 -48467508 + MIR SINE MIR 2 196 -66 360 0 0 0 chr3 169570050 169570090 -48467068 + (TTA)n Simple_repeat Simple_repeat 1 40 0 1973 124 4 0 chr3 169570092 169570367 -48466791 - AluSx SINE Alu -36 276 1 2736 190 51 97 chr3 169570404 169570790 -48466368 - L1ME1 LINE L1 -15 6151 5749 1767 157 3 37 chr3 169570790 169571090 -48466068 - AluSx SINE Alu -17 295 6 2736 190 51 97 chr3 169571090 169571660 -48465498 - L1ME1 LINE L1 -417 5749 5262 2863 10 0 0 chr3 169571660 169571970 -48465188 + AluYb8 SINE Alu 1 310 -8 2736 190 51 97 chr3 169571970 169572068 -48465090 - L1ME1 LINE L1 -904 5262 5161 1620 209 63 33 chr3 169572109 169572596 -48464562 - L1 LINE L1 -961 5185 4687 453 19 0 0 chr3 169572859 169572913 -48464245 + (GA)n Simple_repeat Simple_repeat 1 54 0 385 210 0 0 chr3 169573246 169573308 -48463850 - AluJ/FLAM SINE Alu -240 62 1 368 300 125 19 chr3 169573646 169573806 -48463352 - MER5B DNA MER1_type 0 178 2 1852 165 16 75 chr3 169576400 169576788 -48460370 + MLT1A1 LTR MaLR 1 365 0 350 242 85 121 chr3 169577252 169577417 -48459741 - MIR3 SINE MIR 0 208 50 183 384 35 0 chr3 169578187 169578273 -48458885 + MIR SINE MIR 17 105 -157 2188 85 3 3 chr3 169578391 169578686 -48458472 - AluY SINE Alu 0 311 17 21 71 0 0 chr3 169578772 169578814 -48458344 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr3 169579570 169579595 -48457563 + AT_rich Low_complexity Low_complexity 1 25 0 251 276 221 8 chr3 169580019 169580146 -48457012 + L2 LINE L2 3117 3270 -2 198 191 0 0 chr3 169580986 169581028 -48456130 + (CATATA)n Simple_repeat Simple_repeat 3 44 0 297 0 0 0 chr3 169581573 169581606 -48455552 + (CA)n Simple_repeat Simple_repeat 2 34 0 219 69 0 0 chr3 169581760 169581789 -48455369 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 1110 285 29 57 chr3 169581860 169582337 -48454821 + L1M3d LINE L1 2 465 -5426 * 3460 260 73 28 chr3 169582308 169584390 -48452768 + L1M3 LINE L1 211 2043 -3927 12169 207 59 16 chr3 169584493 169585065 -48452093 + L1M3 LINE L1 2077 2623 -3369 203 53 0 53 chr3 169585065 169585103 -48452055 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 12169 207 59 16 chr3 169585103 169587603 -48449555 + L1M3 LINE L1 2623 5298 -694 198 71 0 0 chr3 169588138 169588166 -48448992 + (TA)n Simple_repeat Simple_repeat 1 28 0 1577 142 3 56 chr3 169588220 169588532 -48448626 + AluJo SINE Alu 13 312 0 34 0 0 0 chr3 169589582 169589616 -48447542 + AT_rich Low_complexity Low_complexity 1 34 0 996 136 38 0 chr3 169590162 169590346 -48446812 - MER63 DNA MER1_type -90 970 780 645 211 0 0 chr3 169590347 169590461 -48446697 + MER63 DNA MER1_type 676 789 -272 1466 206 81 24 chr3 169590470 169590853 -48446305 - MER63C DNA MER1_type -525 405 1 348 329 112 12 chr3 169591725 169591886 -48445272 - MER5B DNA MER1_type -1 177 1 2421 35 0 0 chr3 169592683 169592987 -48444171 - AluY SINE Alu 0 304 1 783 208 14 0 chr3 169594973 169595150 -48442008 + FRAM SINE Alu 1 179 0 778 323 49 66 chr3 169595581 169596114 -48441044 + L3 LINE CR1 398 921 -656 530 244 24 0 chr3 169596273 169596396 -48440762 - MER69 DNA AcHobo -1091 135 10 799 292 94 34 chr3 169596407 169596532 -48440626 - L1ME LINE L1 -356 5806 5690 898 204 30 5 chr3 169596532 169596733 -48440425 + MER3 DNA MER1_type 3 208 -1 799 292 94 34 chr3 169596733 169597141 -48440017 - L1ME LINE L1 -472 5690 5224 411 252 93 9 chr3 169597150 169597257 -48439901 + MER5B DNA MER1_type 42 157 -21 199 309 18 0 chr3 169597264 169597319 -48439839 + L3 LINE CR1 1345 1400 -177 709 309 106 0 chr3 169597327 169597563 -48439595 + MIR SINE MIR 1 261 -1 5403 244 82 54 chr3 169597623 169598008 -48439150 + L1MC4a LINE L1 4023 4396 -3412 2127 120 7 0 chr3 169598008 169598308 -48438850 + AluY SINE Alu 1 302 -9 5403 244 82 54 chr3 169598308 169599536 -48437622 + L1MC4a LINE L1 4396 5589 -2219 2042 149 30 28 chr3 169599536 169599899 -48437259 - THE1B LTR MaLR 0 364 1 5403 244 82 54 chr3 169599899 169600395 -48436763 + L1MC4a LINE L1 5589 6070 -1738 243 0 0 0 chr3 169600395 169600422 -48436736 + (CA)n Simple_repeat Simple_repeat 2 28 0 5403 244 82 54 chr3 169600422 169600881 -48436277 + L1MC4a LINE L1 6070 7076 -732 1237 121 5 0 chr3 169600892 169601090 -48436068 + L1PB1 LINE L1 2 200 -6663 * 9478 173 46 0 chr3 169601078 169603826 -48433332 + L1PB1 LINE L1 621 3635 -3227 2010 132 10 7 chr3 169604548 169604851 -48432307 + AluSx SINE Alu 1 304 -8 8481 183 21 5 chr3 169605355 169608100 -48429058 + L1PB1 LINE L1 4077 6867 0 244 278 0 0 chr3 169608123 169608195 -48428963 + L1ME3A LINE L1 5668 5739 -423 * 2027 227 96 31 chr3 169608173 169608879 -48428279 + L1MC4a LINE L1 7057 7808 0 189 143 86 0 chr3 169608890 169608925 -48428233 + L3 LINE CR1 1428 1465 -112 410 235 105 6 chr3 169609419 169609581 -48427577 + L1ME4a LINE L1 5944 6121 0 402 289 197 28 chr3 169610122 169610264 -48426894 + MER5A DNA MER1_type 13 189 0 29 28 0 0 chr3 169610318 169610354 -48426804 + AT_rich Low_complexity Low_complexity 1 36 0 7550 19 0 0 chr3 169611736 169612611 -48424547 + L1PA3 LINE L1 5281 6155 0 25 51 0 0 chr3 169612771 169612810 -48424348 + AT_rich Low_complexity Low_complexity 1 39 0 256 250 10 48 chr3 169613248 169613352 -48423806 + L1ME3A LINE L1 5869 5968 -202 21 0 0 0 chr3 169614209 169614230 -48422928 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr3 169614479 169614509 -48422649 + AT_rich Low_complexity Low_complexity 1 30 0 198 323 20 30 chr3 169615429 169615528 -48421630 + MIR3 SINE MIR 90 187 -21 23 0 0 0 chr3 169615644 169615667 -48421491 + AT_rich Low_complexity Low_complexity 1 23 0 243 326 39 31 chr3 169616961 169617090 -48420068 - MIR SINE MIR -15 247 118 375 324 130 20 chr3 169617588 169617615 -48419543 - MER102b DNA MER1_type -1103 325 302 1042 16 8 0 chr3 169617615 169617768 -48419390 - L1PA5 LINE L1 0 6154 6017 375 324 130 20 chr3 169617768 169618033 -48419125 - MER102b DNA MER1_type -1126 302 1 198 217 17 83 chr3 169618050 169618110 -48419048 + L2 LINE L2 3258 3313 0 21 0 0 0 chr3 169618464 169618485 -48418673 + AT_rich Low_complexity Low_complexity 1 21 0 387 0 0 0 chr3 169620497 169620540 -48416618 + (TG)n Simple_repeat Simple_repeat 1 43 0 308 343 32 104 chr3 169622170 169622508 -48414650 + L1M2 LINE L1 590 903 -5946 282 29 0 0 chr3 169623748 169623783 -48413375 + (GA)n Simple_repeat Simple_repeat 1 35 0 390 275 65 80 chr3 169625374 169625517 -48411641 + MIR3 SINE MIR 2 143 -65 2084 159 20 45 chr3 169625517 169625730 -48411428 - MSTD LTR MaLR -2 394 194 1644 139 6 85 chr3 169625730 169626047 -48411111 - AluJo SINE Alu -14 298 7 2084 159 20 45 chr3 169626047 169626235 -48410923 - MSTD LTR MaLR -202 194 3 390 275 65 80 chr3 169626235 169626291 -48410867 + MIR3 SINE MIR 143 198 -10 42644 51 4 1 chr3 169626724 169632214 -48404944 - L1P2 LINE L1 -649 5506 2 27 87 0 0 chr3 169633054 169633123 -48404035 + AT_rich Low_complexity Low_complexity 1 69 0 21 0 0 0 chr3 169633720 169633741 -48403417 + AT_rich Low_complexity Low_complexity 1 21 0 253 289 202 10 chr3 169633782 169633886 -48403272 - L2 LINE L2 0 3272 3149 761 207 11 58 chr3 169634789 169634977 -48402181 + MER58A DNA MER1_type 46 224 0 38 51 0 0 chr3 169635092 169635151 -48402007 + AT_rich Low_complexity Low_complexity 1 59 0 682 265 71 10 chr3 169635163 169635359 -48401799 - MIR SINE MIR -3 259 52 349 172 78 0 chr3 169635820 169635884 -48401274 - AluJ SINE Alu -50 252 184 835 117 16 8 chr3 169635886 169636014 -48401144 - AluJ SINE Alu -179 133 5 231 203 38 0 chr3 169636382 169636461 -48400697 + GA-rich Low_complexity Low_complexity 1 82 0 407 284 80 30 chr3 169636769 169636970 -48400188 - L1MC4a LINE L1 -1884 5924 5714 637 240 73 21 chr3 169636970 169637245 -48399913 + L1M4 LINE L1 2205 2497 -3649 2160 102 3 7 chr3 169637245 169637549 -48399609 + AluSx SINE Alu 1 303 -9 637 240 73 21 chr3 169637549 169637561 -48399597 + L1M4 LINE L1 2497 2507 -3639 * 1809 195 6 0 chr3 169637552 169637875 -48399283 - L1M3 LINE L1 -358 5813 5489 1103 247 130 15 chr3 169638048 169638457 -48398701 - L1ME3A LINE L1 -13 6157 5702 717 244 100 35 chr3 169638477 169638707 -48398451 - LTR40b LTR ERVL -35 427 183 741 194 57 97 chr3 169638708 169638883 -48398275 + Tigger3b DNA MER2_type 1 168 -1063 25 0 0 0 chr3 169638943 169638968 -48398190 + AT_rich Low_complexity Low_complexity 1 25 0 5625 152 34 25 chr3 169639029 169640088 -48397070 + Tigger3b DNA MER2_type 161 1228 -3 1110 209 53 0 chr3 169640094 169640319 -48396839 - LTR40a LTR ERVL -282 237 1 701 309 113 48 chr3 169640319 169641553 -48395605 + L1M4 LINE L1 4075 5388 -758 225 152 0 22 chr3 169641633 169641679 -48395479 - MER46C DNA MER2_type -199 139 95 204 323 0 0 chr3 169641837 169641902 -48395256 - MIR SINE MIR 0 262 198 26 30 0 0 chr3 169641953 169641986 -48395172 + AT_rich Low_complexity Low_complexity 1 33 0 1854 104 52 0 chr3 169641986 169642274 -48394884 - L1PA10 LINE L1 -5 6163 5861 488 348 49 26 chr3 169642286 169642553 -48394605 + L3 LINE CR1 1280 1552 -25 189 74 0 0 chr3 169642926 169642953 -48394205 + (TC)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr3 169643476 169643497 -48393661 + AT_rich Low_complexity Low_complexity 1 21 0 2849 105 35 20 chr3 169643558 169644015 -48393143 + L1PB1 LINE L1 5688 6151 0 838 192 43 14 chr3 169644030 169644238 -48392920 + L1MA9 LINE L1 6099 6312 0 2196 60 40 13 chr3 169644659 169644957 -48392201 - AluY SINE Alu -5 306 1 576 275 30 0 chr3 169645811 169645978 -48391180 - MIR3 SINE MIR -14 194 23 318 221 105 0 chr3 169646114 169646200 -48390958 + MER5B DNA MER1_type 81 175 -3 * 568 170 27 18 chr3 169646200 169646309 -48390849 - MER5A DNA MER1_type -79 110 1 224 312 53 42 chr3 169646356 169646545 -48390613 + L2 LINE L2 2535 2725 -589 222 380 83 8 chr3 169646756 169646877 -48390281 + L2 LINE L2 3140 3269 -3 329 149 0 75 chr3 169646918 169646985 -48390173 - Alu SINE Alu -3 299 238 2103 113 3 0 chr3 169647014 169647307 -48389851 - AluSx SINE Alu -16 296 3 729 271 109 30 chr3 169648069 169648398 -48388760 - MLT1L LTR MaLR -108 507 153 498 189 42 0 chr3 169648630 169648725 -48388433 + MIR SINE MIR 153 251 -11 201 330 40 10 chr3 169648868 169648968 -48388190 - MIR SINE MIR 0 262 160 821 222 93 18 chr3 169649093 169649372 -48387786 - L1MC5 LINE L1 -36 7925 7626 1831 166 0 7 chr3 169650153 169650454 -48386704 - AluJo SINE Alu -13 299 1 292 348 68 19 chr3 169650977 169651184 -48385974 - MIR SINE MIR -20 242 26 1206 260 64 29 chr3 169652338 169652746 -48384412 - MLT1C LTR MaLR -1 466 45 200 296 45 45 chr3 169652779 169652867 -48384291 + MIR SINE MIR 13 100 -162 680 218 0 0 chr3 169653110 169653234 -48383924 - FLAM_A SINE Alu -7 126 3 416 360 76 21 chr3 169653245 169653573 -48383585 + L2 LINE L2 2013 2358 -956 278 404 83 32 chr3 169653628 169653787 -48383371 + L2 LINE L2 2871 3020 -252 2471 62 0 3 chr3 169653787 169654093 -48383065 - AluSp SINE Alu -8 305 1 278 404 83 32 chr3 169654093 169654307 -48382851 + L2 LINE L2 3020 3263 -9 200 222 0 0 chr3 169654595 169654640 -48382518 + A-rich Low_complexity Low_complexity 4 48 0 269 266 16 0 chr3 169655335 169655399 -48381759 + MIR SINE MIR 119 183 -79 815 188 0 0 chr3 169655878 169656011 -48381147 - FLAM_A SINE Alu 0 133 1 468 220 70 0 chr3 169656908 169657008 -48380150 - FLAM_A SINE Alu -32 110 4 337 217 280 21 chr3 169657496 169657639 -48379519 - MER5A DNA MER1_type -2 187 8 931 259 37 5 chr3 169657662 169657878 -48379280 + MER58A DNA MER1_type 2 224 0 457 244 99 0 chr3 169658422 169658553 -48378605 + MER103 DNA DNA 21 164 -2 503 317 45 25 chr3 169658719 169658918 -48378240 + MIR SINE MIR 60 262 0 204 346 144 0 chr3 169660038 169660142 -48377016 + MIR SINE MIR 90 208 -54 608 273 55 61 chr3 169660202 169660513 -48376645 + L2 LINE L2 2959 3267 -46 794 262 233 25 chr3 169661027 169661477 -48375681 + L2 LINE L2 2774 3313 0 625 227 32 32 chr3 169661780 169661965 -48375193 - MER5A DNA MER1_type 0 189 5 323 401 6 6 chr3 169662529 169662696 -48374462 + MIR3 SINE MIR 42 208 0 831 237 54 0 chr3 169662798 169663045 -48374113 + MIR SINE MIR 18 251 -11 611 277 64 34 chr3 169663258 169663493 -48373665 + L1ME1 LINE L1 5920 6161 -5 2630 280 100 25 chr3 169664025 169665651 -48371507 - L1MEd LINE L1 -2172 3957 2210 207 161 0 0 chr3 169665660 169665691 -48371467 + (TG)n Simple_repeat Simple_repeat 2 32 0 440 243 63 79 chr3 169665755 169666183 -48370975 - L1MC4 LINE L1 -87 7955 7535 365 295 14 51 chr3 169666268 169666344 -48370814 - L1MEd LINE L1 -4839 1471 1394 836 234 63 10 chr3 169666344 169666549 -48370609 + MER20 DNA MER1_type 4 219 0 365 295 14 51 chr3 169666549 169666767 -48370391 - L1MEd LINE L1 -4916 1394 1159 792 218 106 61 chr3 169666773 169666837 -48370321 - MER69 DNA AcHobo -7 2519 2459 1948 114 130 6 chr3 169666837 169667161 -48369997 + THE1B LTR MaLR 1 364 0 792 218 106 61 chr3 169667161 169667491 -48369667 - MER69 DNA AcHobo -67 2459 2107 395 299 126 43 chr3 169667492 169667610 -48369548 - L2 LINE L2 -1479 1835 1728 209 33 33 0 chr3 169667610 169667640 -48369518 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 395 299 126 43 chr3 169667640 169667799 -48369359 - L2 LINE L2 -1586 1728 1535 1590 219 95 9 chr3 169667832 169668283 -48368875 + Charlie4a DNA MER1_type 14 503 -5 1336 263 50 89 chr3 169668286 169668717 -48368441 - L2 LINE L2 -1803 1511 1114 2008 147 3 0 chr3 169668717 169669016 -48368142 + AluJb SINE Alu 1 300 -12 1336 263 50 89 chr3 169669016 169669260 -48367898 - L2 LINE L2 -2200 1114 862 280 309 95 71 chr3 169670350 169670518 -48366640 - L2 LINE L2 0 3272 3101 188 219 122 24 chr3 169670652 169670734 -48366424 - MER5A DNA MER1_type -18 171 82 385 287 28 0 chr3 169670856 169670964 -48366194 - MER91A DNA MER1_type -70 126 16 5897 52 95 0 chr3 169672645 169673421 -48363737 + L1PA3 LINE L1 5305 6154 -1 4837 84 15 1 chr3 169673421 169674095 -48363063 + L1PA13 LINE L1 5476 6163 0 244 263 175 29 chr3 169674178 169674349 -48362809 - L1ME3A LINE L1 -14 6156 5961 262 252 26 61 chr3 169674440 169674549 -48362609 - L1MC5 LINE L1 -430 7531 7426 2728 44 12 0 chr3 169674549 169674888 -48362270 + L1PA4 LINE L1 5810 6152 -3 986 315 72 16 chr3 169675221 169675850 -48361308 - L1MEc LINE L1 -4647 1614 951 242 220 0 0 chr3 169675956 169676015 -48361143 - L1MEc LINE L1 -5294 776 718 564 287 130 73 chr3 169676920 169677934 -48359224 + L1MEd LINE L1 93 1164 -5041 338 278 128 18 chr3 169677978 169678259 -48358899 + L1MEd LINE L1 1309 1620 -4776 26 64 0 0 chr3 169678384 169678431 -48358727 + AT_rich Low_complexity Low_complexity 1 47 0 310 280 156 40 chr3 169678719 169678969 -48358189 + L1MEd LINE L1 2112 2390 -4006 1615 90 8 20 chr3 169678976 169679221 -48357937 + L1PA10 LINE L1 5912 6153 -15 42 20 0 0 chr3 169679224 169679273 -48357885 + AT_rich Low_complexity Low_complexity 1 49 0 314 303 87 49 chr3 169679311 169679598 -48357560 + L1MEd LINE L1 2386 2683 -3532 181 289 247 10 chr3 169679787 169679884 -48357274 + L2 LINE L2 3186 3305 -8 21 57 0 0 chr3 169680020 169680055 -48357103 + AT_rich Low_complexity Low_complexity 1 35 0 292 139 0 0 chr3 169680159 169680202 -48356956 + tRNA-Gln-CAG tRNA tRNA 1 43 -32 318 263 50 50 chr3 169680226 169680386 -48356772 + L1MEd LINE L1 3393 3552 -2663 577 290 109 6 chr3 169680526 169680709 -48356449 - MIR SINE MIR -59 203 2 544 274 72 13 chr3 169680963 169681172 -48355986 + L1MC5 LINE L1 6682 6979 -1063 204 67 0 0 chr3 169681309 169681339 -48355819 + (TAAAA)n Simple_repeat Simple_repeat 3 32 0 13972 121 7 45 chr3 169681653 169683942 -48353216 + Tigger1 DNA MER2_type 218 2418 0 262 317 79 0 chr3 169683981 169684208 -48352950 + L1MEd LINE L1 4480 4724 -1491 231 136 45 0 chr3 169684383 169684427 -48352731 + L1M4 LINE L1 5196 5241 -905 292 270 17 17 chr3 169686192 169686321 -48350837 + L1M3 LINE L1 5689 5807 -361 2101 108 0 10 chr3 169688007 169688313 -48348845 + AluSx SINE Alu 1 303 -9 257 302 75 0 chr3 169689149 169689255 -48347903 + MIR SINE MIR 100 213 -49 5268 168 21 28 chr3 169689721 169691333 -48345825 + L1PA16 LINE L1 4567 6155 -11 1703 145 6 79 chr3 169692417 169692652 -48344506 + L1MB3 LINE L1 5575 5775 -408 2434 145 30 5 chr3 169692652 169693086 -48344072 - MER65A LTR ERV1 0 445 1 1703 145 6 79 chr3 169693086 169693216 -48343942 + L1MB3 LINE L1 5775 5913 -270 738 153 14 42 chr3 169693305 169693449 -48343709 - L1 LINE L1 -1122 5024 4885 1061 189 40 4 chr3 169693489 169693717 -48343441 + L1MB3 LINE L1 5946 6181 -2 3604 146 10 25 chr3 169693804 169694475 -48342683 + L1 LINE L1 4136 4796 -1350 289 360 0 0 chr3 169696272 169696361 -48340797 + MIR SINE MIR 51 139 -123 594 370 91 23 chr3 169696446 169696976 -48340182 + L2 LINE L2 2375 2940 -374 6387 68 50 0 chr3 169697107 169698328 -48338830 + L1PA8 LINE L1 4897 6163 -9 378 74 0 0 chr3 169698341 169698395 -48338763 + (TG)n Simple_repeat Simple_repeat 1 54 0 202 360 34 11 chr3 169698602 169698691 -48338467 + L2 LINE L2 3182 3272 0 342 324 97 0 chr3 169698708 169698946 -48338212 - L1ME LINE L1 -303 5818 5558 5179 165 20 53 chr3 169699761 169699835 -48337323 - L1MC1 LINE L1 -71 6262 6187 2394 73 0 0 chr3 169699835 169700135 -48337023 - AluY SINE Alu -11 300 1 270 0 0 0 chr3 169700144 169700174 -48336984 + (TTA)n Simple_repeat Simple_repeat 2 31 0 5179 165 20 53 chr3 169700174 169700188 -48336970 - L1MC1 LINE L1 -154 6179 6166 886 142 0 8 chr3 169700188 169700322 -48336836 - FLAM_C SINE Alu 0 133 1 5179 165 20 53 chr3 169700322 169701220 -48335938 - L1MC1 LINE L1 -167 6166 5298 2264 115 0 0 chr3 169701220 169701524 -48335634 - AluSg SINE Alu -6 304 1 5179 165 20 53 chr3 169701524 169701634 -48335524 - L1MC1 LINE L1 -1035 5298 5186 195 129 0 0 chr3 169701640 169701671 -48335487 + (CATATA)n Simple_repeat Simple_repeat 1 31 0 2145 52 0 2 chr3 169701781 169702060 -48335098 - L1PA4 LINE L1 -160 5995 5721 1204 184 5 5 chr3 169702520 169702726 -48334432 + AluJo SINE Alu 86 291 -21 391 240 0 39 chr3 169702827 169702931 -48334227 - MER58C DNA MER1_type -1 214 115 305 229 25 8 chr3 169702954 169703076 -48334082 + CT-rich Low_complexity Low_complexity 3 126 0 213 269 0 0 chr3 169703123 169703190 -48333968 + CT-rich Low_complexity Low_complexity 3 69 0 288 260 13 13 chr3 169703237 169703314 -48333844 - MER58C DNA MER1_type -137 78 2 363 319 145 6 chr3 169703987 169704153 -48333005 - L2 LINE L2 -598 2716 2528 24 67 0 0 chr3 169707598 169707643 -48329515 + AT_rich Low_complexity Low_complexity 1 45 0 32 43 0 0 chr3 169707899 169707945 -48329213 + AT_rich Low_complexity Low_complexity 1 46 0 2432 172 40 36 chr3 169708709 169709255 -48327903 + L1M2 LINE L1 4811 5330 -970 186 71 0 0 chr3 169709255 169709283 -48327875 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 2432 172 40 36 chr3 169709283 169709743 -48327415 + L1M2 LINE L1 5330 5787 -513 * 4750 147 1 1 chr3 169709741 169710525 -48326633 + L1P LINE L1 4341 5124 -1022 409 181 21 53 chr3 169710525 169710619 -48326539 - LTR41 LTR ERVL -675 98 8 1016 311 45 22 chr3 169710625 169710982 -48326176 - MLT1J2 LTR MaLR -79 371 7 2817 0 0 6 chr3 169711291 169711603 -48325555 - AluYa5 SINE Alu -1 310 1 571 189 16 8 chr3 169712203 169712325 -48324833 - MER103 DNA DNA -3 163 41 279 246 0 0 chr3 169712407 169712464 -48324694 + MIR3 SINE MIR 152 208 0 444 265 83 17 chr3 169713675 169713856 -48323302 - MLT1J LTR MaLR -212 299 107 280 173 19 19 chr3 169713814 169713866 -48323292 - LTR67 LTR ERVL -404 153 102 * 353 264 74 61 chr3 169714128 169714276 -48322882 + MER5A DNA MER1_type 37 186 -3 604 240 44 89 chr3 169714283 169714554 -48322604 - MER102b DNA MER1_type -10 331 73 780 250 5 14 chr3 169714560 169714776 -48322382 + L1M4 LINE L1 4899 5112 -1034 258 333 65 36 chr3 169715311 169715449 -48321709 + L3 LINE CR1 1435 1576 -1 38 0 0 0 chr3 169715704 169715742 -48321416 + AT_rich Low_complexity Low_complexity 1 38 0 1943 116 8 0 chr3 169715748 169716016 -48321142 - AluSg SINE Alu -25 285 16 258 95 0 0 chr3 169716417 169716459 -48320699 + (CA)n Simple_repeat Simple_repeat 2 43 0 1655 265 53 24 chr3 169718247 169718753 -48318405 - LTR33 LTR ERVL 0 521 1 199 372 12 0 chr3 169718820 169718906 -48318252 + L3 LINE CR1 390 476 -1101 1295 150 0 24 chr3 169718927 169719140 -48318018 - AluJo SINE Alu -23 289 82 1150 149 0 27 chr3 169719142 169719330 -48317828 - AluJo SINE Alu -129 183 1 476 290 79 58 chr3 169719472 169719800 -48317358 + L3 LINE CR1 1189 1523 -54 740 321 13 2 chr3 169720062 169720298 -48316860 + MIR SINE MIR 11 245 -17 1954 134 27 0 chr3 169720933 169721231 -48315927 + AluSx SINE Alu 1 306 -6 468 296 61 0 chr3 169721668 169721800 -48315358 - MIR SINE MIR -119 143 4 2251 228 110 57 chr3 169721949 169722749 -48314409 - L1MB8 LINE L1 -194 5984 5228 243 0 0 0 chr3 169722749 169722776 -48314382 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4216 58 4 4 chr3 169722778 169723314 -48313844 - L1PA7 LINE L1 -12 6142 5607 2251 228 110 57 chr3 169723314 169724072 -48313086 - L1MB8 LINE L1 -950 5228 4327 224 331 103 7 chr3 169724703 169724839 -48312319 + L2 LINE L2 1846 1994 -1320 197 300 114 0 chr3 169725498 169725568 -48311590 + L2 LINE L2 2764 2841 -473 300 338 26 0 chr3 169725713 169725790 -48311368 + L2 LINE L2 3164 3242 -30 303 28 0 0 chr3 169725811 169725847 -48311311 + (TA)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chr3 169726324 169726352 -48310806 + AT_rich Low_complexity Low_complexity 1 28 0 2034 121 0 20 chr3 169726457 169726755 -48310403 - AluSg SINE Alu -18 292 1 375 278 127 35 chr3 169726781 169726954 -48310204 + MIR SINE MIR 74 262 0 2165 107 0 0 chr3 169727074 169727355 -48309803 - AluSx SINE Alu -23 289 9 2536 48 0 0 chr3 169727797 169728091 -48309067 + AluY SINE Alu 1 294 -17 1379 94 31 0 chr3 169728588 169728779 -48308379 + MER107 DNA MER1_type 1 197 0 28 0 0 0 chr3 169729061 169729089 -48308069 + AT_rich Low_complexity Low_complexity 1 28 0 2075 131 0 0 chr3 169731046 169731337 -48305821 + AluSx SINE Alu 1 291 -21 363 44 0 0 chr3 169731339 169731384 -48305774 + (TG)n Simple_repeat Simple_repeat 2 46 0 340 284 0 0 chr3 169731384 169731472 -48305686 + L1MC4 LINE L1 6614 6701 -1341 189 0 0 0 chr3 169731472 169731493 -48305665 + (GA)n Simple_repeat Simple_repeat 2 22 0 536 260 27 7 chr3 169731622 169731768 -48305390 - LTR16C LTR ERVL -164 327 179 24446 138 20 76 chr3 169733338 169738346 -48298812 - L1P LINE L1 -1422 4724 1 196 293 0 0 chr3 169739265 169739306 -48297852 - L2 LINE L2 -8 3264 3224 341 321 250 27 chr3 169739609 169740210 -48296948 - L2 LINE L2 -342 2972 2238 285 140 0 0 chr3 169741114 169741171 -48295987 + (TA)n Simple_repeat Simple_repeat 2 58 0 198 91 0 0 chr3 169741925 169741958 -48295200 + (T)n Simple_repeat Simple_repeat 1 33 0 237 278 0 42 chr3 169741958 169742030 -48295128 + MIR SINE MIR 40 108 -100 2011 229 88 27 chr3 169742221 169742892 -48294266 + HsTC2a DNA Tc2 33 744 0 280 301 97 25 chr3 169743470 169743789 -48293369 - L1ME4a LINE L1 -170 5951 5610 187 235 0 0 chr3 169744831 169744865 -48292293 + L2 LINE L2 3227 3260 -12 935 231 98 60 chr3 169744891 169745437 -48291721 + MLT2F LTR ERVL 2 598 -65 2072 128 0 7 chr3 169745850 169746146 -48291012 - AluSg SINE Alu -16 294 1 1318 231 30 83 chr3 169746712 169747183 -48289975 - MER39 LTR ERV1 -2 705 260 229 196 65 0 chr3 169747160 169747206 -48289952 - MER39B LTR ERV1 -562 91 43 * 342 281 37 37 chr3 169747298 169747433 -48289725 - L3 LINE CR1 -231 1346 1212 344 333 48 16 chr3 169747454 169747580 -48289578 - L2 LINE L2 -1 3312 3183 228 311 13 80 chr3 169747579 169747651 -48289507 - L3 LINE CR1 -392 1185 1110 * 216 0 0 0 chr3 169747651 169747675 -48289483 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1442 201 29 0 chr3 169747683 169747957 -48289201 - AluJo SINE Alu -30 282 1 228 311 13 80 chr3 169747957 169748026 -48289132 - L3 LINE CR1 -474 1103 1045 1406 111 44 9 chr3 169748357 169748582 -48288576 - L1PA11 LINE L1 0 6174 5942 23 33 0 0 chr3 169749439 169749469 -48287689 + AT_rich Low_complexity Low_complexity 1 30 0 26 104 0 0 chr3 169749545 169749641 -48287517 + AT_rich Low_complexity Low_complexity 1 96 0 201 260 55 41 chr3 169749655 169749728 -48287430 - L2 LINE L2 -1 3271 3198 406 297 159 7 chr3 169749880 169750025 -48287133 - L2 LINE L2 -557 2757 2591 228 232 30 91 chr3 169750132 169750231 -48286927 - L2 LINE L2 -1211 2103 2011 1381 219 47 30 chr3 169750911 169751276 -48285882 - MLT1A2 LTR MaLR 0 374 4 22 35 0 0 chr3 169751673 169751702 -48285456 + AT_rich Low_complexity Low_complexity 1 29 0 4799 197 60 22 chr3 169751776 169752937 -48284221 - L1MC4a LINE L1 0 7808 6604 437 319 68 32 chr3 169753290 169753538 -48283620 + L2 LINE L2 2600 2856 -458 316 330 91 11 chr3 169753792 169753968 -48283190 + L2 LINE L2 1786 1975 -1339 534 354 89 41 chr3 169754058 169754690 -48282468 - L2 LINE L2 -454 2860 2199 204 325 0 26 chr3 169754737 169754814 -48282344 + L2 LINE L2 2395 2469 -845 394 352 39 30 chr3 169756029 169756259 -48280899 - L2 LINE L2 0 3313 3082 1975 137 4 0 chr3 169756496 169756773 -48280385 + AluSx SINE Alu 1 278 -34 1199 181 125 0 chr3 169757178 169757465 -48279693 - MER33 DNA MER1_type -1 323 1 588 285 58 34 chr3 169758645 169758852 -48278306 + L2 LINE L2 3098 3309 -4 4540 58 37 3 chr3 169759054 169759655 -48277503 + L1PA8 LINE L1 5550 6170 -2 23 78 0 0 chr3 169759811 169759862 -48277296 + AT_rich Low_complexity Low_complexity 1 51 0 831 157 7 20 chr3 169759994 169760141 -48277017 - MLT1D LTR MaLR -337 168 24 2585 103 19 3 chr3 169760253 169760622 -48276536 - THE1C LTR MaLR 0 375 1 24 32 0 0 chr3 169761241 169761272 -48275886 + AT_rich Low_complexity Low_complexity 1 31 0 26 50 0 0 chr3 169761319 169761359 -48275799 + AT_rich Low_complexity Low_complexity 1 40 0 1092 227 52 52 chr3 169763100 169763545 -48273613 + LTR56 LTR ERV1 1 445 0 1017 176 38 14 chr3 169763549 169763759 -48273399 + L1M1 LINE L1 20 234 -7331 2249 117 21 35 chr3 169763814 169764189 -48272969 - THE1C LTR MaLR -3 372 3 17821 166 54 6 chr3 169764197 169768011 -48269147 + L1M1 LINE L1 395 4391 -3174 2222 171 59 36 chr3 169768011 169768539 -48268619 - MLT2A2 LTR ERVL 0 554 1 5889 203 13 42 chr3 169768539 169770497 -48266661 + L1M1 LINE L1 4387 6211 -1354 2157 262 78 54 chr3 169770502 169771334 -48265824 + MER21B LTR ERV1 1 852 -11 597 159 127 16 chr3 169771344 169771470 -48265688 + MLT1A1 LTR MaLR 226 365 0 590 268 96 0 chr3 169771470 169771636 -48265522 - L1 LINE L1 -1707 4439 4242 312 70 0 0 chr3 169771636 169771679 -48265479 + (TG)n Simple_repeat Simple_repeat 2 44 0 590 268 96 0 chr3 169771679 169771751 -48265407 - L1 LINE L1 -1904 4242 4178 * 1672 192 0 0 chr3 169771748 169772065 -48265093 - L1 LINE L1 -1052 5094 4778 1316 176 0 0 chr3 169772066 169772282 -48264876 - MLT1A1 LTR MaLR -149 216 1 3726 195 43 11 chr3 169772294 169773793 -48263365 + L1MB7 LINE L1 4447 5991 -193 1875 93 4 31 chr3 169773884 169774141 -48263017 + AluSg SINE Alu 45 294 -16 367 321 9 9 chr3 169774376 169774488 -48262670 - MLT1K LTR MaLR -341 247 136 1176 219 24 14 chr3 169774869 169775161 -48261997 - L1MD2 LINE L1 -12 6347 6053 324 188 62 0 chr3 169775162 169775226 -48261932 + MER21B LTR ERV1 1 68 -795 233 224 224 0 chr3 169775259 169775317 -48261841 + MER21B LTR ERV1 19 89 -774 3636 210 62 18 chr3 169775320 169776106 -48261052 + MER21B LTR ERV1 43 863 0 3565 175 90 13 chr3 169776107 169776813 -48260345 - L1MD2 LINE L1 -302 6057 5265 2353 104 3 0 chr3 169776813 169777122 -48260036 - AluSg SINE Alu 0 310 1 3565 175 90 13 chr3 169777122 169777306 -48259852 - L1MD2 LINE L1 -1094 5265 5097 834 181 22 16 chr3 169777693 169777875 -48259283 - MER53 DNA DNA -5 184 2 22 35 0 0 chr3 169777969 169777998 -48259160 + AT_rich Low_complexity Low_complexity 1 29 0 289 319 22 0 chr3 169778038 169778129 -48259029 - MIR3 SINE MIR -6 202 110 2529 36 0 23 chr3 169779938 169780243 -48256915 - AluY SINE Alu -13 298 1 26 0 0 0 chr3 169780350 169780376 -48256782 + AT_rich Low_complexity Low_complexity 1 26 0 454 286 162 0 chr3 169780779 169780933 -48256225 - MER5A DNA MER1_type -1 188 10 913 168 77 53 chr3 169781319 169781528 -48255630 + MER20 DNA MER1_type 6 219 0 24 67 0 0 chr3 169782246 169782291 -48254867 + AT_rich Low_complexity Low_complexity 1 45 0 2787 198 22 65 chr3 169782402 169783083 -48254075 - MER82 DNA MER2_type -1 652 1 794 283 96 34 chr3 169783120 169783633 -48253525 + L2 LINE L2 2562 3168 -145 223 309 143 16 chr3 169783918 169784044 -48253114 + L2 LINE L2 2207 2348 -966 18259 30 5 0 chr3 169784129 169787093 -48250065 - L1PA3 LINE L1 -2 6153 3167 5659 80 11 0 chr3 169787093 169787839 -48249319 - L1PA10 LINE L1 -17 6151 5398 203 323 10 30 chr3 169788051 169788150 -48249008 + L2 LINE L2 2698 2794 -520 275 312 231 56 chr3 169788305 169788574 -48248584 + L2 LINE L2 2952 3267 -5 432 278 197 12 chr3 169788603 169788862 -48248296 + L1ME4a LINE L1 5813 6119 -2 21 36 0 0 chr3 169788923 169788951 -48248207 + AT_rich Low_complexity Low_complexity 1 28 0 2227 113 0 0 chr3 169788992 169789292 -48247866 - AluSg SINE Alu -1 309 10 392 286 87 0 chr3 169789683 169789809 -48247349 - L2 LINE L2 0 3272 3136 981 284 70 88 chr3 169789975 169790286 -48246872 + L2 LINE L2 2578 2893 -420 2512 154 24 7 chr3 169790286 169790707 -48246451 - MSTA LTR MaLR 0 428 1 9152 178 25 3 chr3 169790707 169792322 -48244836 - MSTA-int LTR MaLR 0 1651 1 2596 127 14 32 chr3 169792325 169792759 -48244399 - MSTA LTR MaLR -2 426 1 981 284 70 88 chr3 169792759 169793177 -48243981 + L2 LINE L2 2894 3308 -5 21 57 0 0 chr3 169793249 169793284 -48243874 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr3 169793569 169793594 -48243564 + AT_rich Low_complexity Low_complexity 1 25 0 255 301 96 27 chr3 169795079 169795225 -48241933 + MIR SINE MIR 31 186 -76 270 300 226 32 chr3 169796571 169796881 -48240277 + L2 LINE L2 2931 3300 -13 21087 160 28 14 chr3 169847700 169855249 -48181909 - L1MA3 LINE L1 -56 7668 12 1399 256 63 29 chr3 169855268 169855859 -48181299 + L1MC4a LINE L1 5442 6052 -1756 301 304 48 8 chr3 169855946 169856071 -48181087 - MLT1L LTR MaLR -368 247 118 203 235 12 25 chr3 169856239 169856320 -48180838 + (TATAA)n Simple_repeat Simple_repeat 5 84 0 1319 194 35 25 chr3 169856325 169856692 -48180466 + L1 LINE L1 3478 3848 -2298 376 215 0 13 chr3 169856694 169856773 -48180385 + MER58B DNA MER1_type 229 306 -35 2249 61 4 4 chr3 169856775 169857081 -48180077 + AluY SINE Alu 1 306 0 873 217 106 0 chr3 169859978 169860167 -48176991 + MIR SINE MIR 5 213 -49 285 75 0 0 chr3 169860188 169860228 -48176930 + (TG)n Simple_repeat Simple_repeat 2 41 0 220 309 138 0 chr3 169860241 169860335 -48176823 - MIR SINE MIR -108 154 48 2122 125 3 0 chr3 169860466 169860763 -48176395 - AluSx SINE Alu -14 298 1 21 0 0 0 chr3 169860923 169860944 -48176214 + AT_rich Low_complexity Low_complexity 1 21 0 234 62 0 0 chr3 169861026 169861058 -48176100 + (CA)n Simple_repeat Simple_repeat 1 32 0 1000 105 23 6 chr3 169861189 169861361 -48175797 - L1P LINE L1 -737 5428 5254 247 170 0 0 chr3 169861524 169861571 -48175587 - L1M4 LINE L1 -1366 4780 4734 1912 121 24 7 chr3 169862559 169862848 -48174310 - AluSx SINE Alu -18 294 1 4357 159 39 8 chr3 169862970 169863820 -48173338 + HSMAR2 DNA Mariner 3 878 -424 1738 174 9 40 chr3 169863986 169864308 -48172850 + AluJo SINE Alu 1 312 0 2197 137 36 3 chr3 169864401 169864926 -48172232 + L1P4 LINE L1 5102 5639 -527 396 0 0 0 chr3 169864927 169864971 -48172187 + (TA)n Simple_repeat Simple_repeat 1 44 0 * 498 17 0 0 chr3 169864970 169865029 -48172129 + (GA)n Simple_repeat Simple_repeat 2 60 0 222 91 0 0 chr3 169865541 169865574 -48171584 + (CA)n Simple_repeat Simple_repeat 1 33 0 2183 114 7 0 chr3 169865962 169866259 -48170899 + AluSg SINE Alu 1 299 -11 364 313 92 26 chr3 169866432 169866627 -48170531 + MIR SINE MIR 49 256 -6 239 356 96 7 chr3 169866708 169866854 -48170304 - MIR SINE MIR -51 211 53 22 80 0 0 chr3 169866933 169866983 -48170175 + AT_rich Low_complexity Low_complexity 1 50 0 497 170 53 0 chr3 169867081 169867175 -48169983 - L1PA16 LINE L1 -9 6157 6059 578 262 30 0 chr3 169867279 169867447 -48169711 - AluSx SINE Alu -79 233 61 273 341 0 0 chr3 169867495 169867583 -48169575 + MIR3 SINE MIR 98 185 -23 5051 202 94 13 chr3 169868192 169869680 -48167478 - MER52A LTR ERV1 0 1755 113 210 304 82 98 chr3 169870082 169870266 -48166892 + L2 LINE L2 2906 3086 -186 2262 69 21 3 chr3 169871064 169871355 -48165803 + AluY SINE Alu 1 296 -15 5643 107 6 19 chr3 169871521 169872925 -48164233 - L1PA14 LINE L1 -3 6158 4734 15516 155 114 7 chr3 169872931 169876199 -48160959 - L1PA12 LINE L1 -3968 3616 1 5476 174 17 9 chr3 169876235 169877376 -48159782 - L1MC1 LINE L1 -18 6315 5174 934 233 40 26 chr3 169877383 169877611 -48159547 - MIR SINE MIR -14 248 18 318 257 79 0 chr3 169878731 169878843 -48158315 - MIR SINE MIR -62 146 38 231 295 313 0 chr3 169880047 169880159 -48156999 - L2 LINE L2 -2 3270 3124 269 254 9 27 chr3 169880563 169880675 -48156483 + MLT1E LTR MaLR 1 64 -478 * 1047 255 42 58 chr3 169880673 169881054 -48156104 + MLT1E LTR MaLR 206 580 -13 557 236 111 80 chr3 169881674 169882026 -48155132 + L2 LINE L2 2946 3308 -5 22 35 0 0 chr3 169882248 169882277 -48154881 + AT_rich Low_complexity Low_complexity 1 29 0 275 313 89 9 chr3 169883392 169883504 -48153654 + MLT1L LTR MaLR 322 442 -173 243 259 192 31 chr3 169883752 169883945 -48153213 - MIR SINE MIR -9 253 30 275 345 152 27 chr3 169884283 169884579 -48152579 - L2 LINE L2 -568 2746 2414 208 182 23 0 chr3 169885591 169885635 -48151523 + (CAA)n Simple_repeat Simple_repeat 1 45 0 2158 101 0 14 chr3 169886611 169886907 -48150251 - AluSq SINE Alu -21 292 1 962 237 110 52 chr3 169887001 169887068 -48150090 - L1MC1 LINE L1 -1443 4703 4641 183 42 0 0 chr3 169887068 169887092 -48150066 + (CA)n Simple_repeat Simple_repeat 2 25 0 962 237 110 52 chr3 169887092 169887586 -48149572 - L1MC1 LINE L1 -1505 4641 4109 3510 144 18 5 chr3 169888021 169888625 -48148533 - L1PA15 LINE L1 -8 6157 5546 2747 115 16 7 chr3 169888895 169889348 -48147810 + HSMAR2 DNA Mariner 846 1302 0 376 344 97 7 chr3 169889488 169889767 -48147391 + L2 LINE L2 2461 2764 -550 2445 104 0 0 chr3 169890425 169890734 -48146424 + AluSx SINE Alu 1 309 -3 180 0 0 0 chr3 169891433 169891453 -48145705 + (TTG)n Simple_repeat Simple_repeat 2 21 0 198 0 0 0 chr3 169891509 169891531 -48145627 + (CAAG)n Simple_repeat Simple_repeat 3 24 0 579 141 33 66 chr3 169892534 169892655 -48144503 - FLAM_A SINE Alu -4 138 22 24 91 0 0 chr3 169893987 169894053 -48143105 + AT_rich Low_complexity Low_complexity 1 66 0 615 195 50 19 chr3 169894217 169894376 -48142782 + MER58C DNA MER1_type 52 215 0 180 125 0 0 chr3 169895343 169895375 -48141783 + (TATG)n Simple_repeat Simple_repeat 4 35 0 25 31 0 0 chr3 169895672 169895704 -48141454 + AT_rich Low_complexity Low_complexity 1 32 0 3401 154 99 84 chr3 169896843 169897719 -48139439 - MER21A LTR ERV1 -17 914 26 254 260 55 0 chr3 169898332 169898447 -48138711 + GA-rich Low_complexity Low_complexity 1 121 0 387 0 0 0 chr3 169898752 169898795 -48138363 + (T)n Simple_repeat Simple_repeat 1 43 0 234 311 33 33 chr3 169898843 169898965 -48138193 + MLT1J2 LTR MaLR 280 401 -49 25 51 0 0 chr3 169899661 169899700 -48137458 + AT_rich Low_complexity Low_complexity 1 39 0 454 287 46 36 chr3 169901400 169901595 -48135563 + MLT1J2 LTR MaLR 23 219 -231 24 0 0 0 chr3 169901699 169901723 -48135435 + AT_rich Low_complexity Low_complexity 1 24 0 2379 88 0 3 chr3 169902019 169902324 -48134834 + AluSp SINE Alu 1 304 -9 1091 167 0 0 chr3 169902338 169902506 -48134652 + FAM SINE Alu 1 168 -7 1591 150 15 11 chr3 169902551 169902811 -48134347 + AluJb SINE Alu 23 283 -29 510 261 25 8 chr3 169902936 169903055 -48134103 - MIR SINE MIR -33 229 109 35980 88 7 8 chr3 169903950 169910092 -48127066 - L1PA5 LINE L1 -1 6153 11 4992 200 59 19 chr3 169910104 169910347 -48126811 - L1 LINE L1 -1898 4248 4016 4521 58 26 16 chr3 169910347 169910928 -48126230 + LTR14C LTR ERVK 1 587 0 4992 200 59 19 chr3 169910928 169912138 -48125020 - L1 LINE L1 -2130 4016 2737 36773 73 11 2 chr3 169913050 169918187 -48118971 + L1P LINE L1 1 5184 -962 3376 138 51 0 chr3 169918302 169918874 -48118284 - L1P LINE L1 -5545 601 1 1775 89 0 30 chr3 169919493 169919728 -48117430 - AluY SINE Alu -12 299 72 231 294 54 0 chr3 169920328 169920420 -48116738 + MLT1J LTR MaLR 415 511 0 4897 142 34 17 chr3 169920604 169921484 -48115674 - MER4D LTR ERV1 -8 895 1 264 351 142 0 chr3 169921655 169921803 -48115355 - L2 LINE L2 -546 2768 2600 186 189 0 0 chr3 169922724 169922761 -48114397 - L2 LINE L2 -1 3312 3276 635 338 98 25 chr3 169923284 169923765 -48113393 - L2 LINE L2 -166 3106 2590 185 339 48 36 chr3 169924648 169924813 -48112345 + L2 LINE L2 1782 1948 -1366 534 302 64 46 chr3 169925518 169925965 -48111193 - L1ME LINE L1 -729 5441 4981 24 67 0 0 chr3 169926183 169926228 -48110930 + AT_rich Low_complexity Low_complexity 1 45 0 240 214 36 43 chr3 169926256 169926396 -48110762 - L1ME LINE L1 -1475 4671 4533 914 186 131 21 chr3 169927169 169927405 -48109753 - MLT1A1 LTR MaLR 0 365 104 755 166 24 30 chr3 169927410 169927579 -48109579 - MER4D LTR ERV1 0 903 736 1758 180 73 36 chr3 169927580 169928040 -48109118 - LTR2B LTR ERV1 0 490 1 * 2536 177 17 44 chr3 169928040 169928642 -48108516 - MER4D LTR ERV1 -163 616 54 1433 157 71 25 chr3 169928616 169928897 -48108261 - MER49 LTR ERV1 -629 294 1 * 440 209 12 0 chr3 169928925 169929011 -48108147 - MLT1A1 LTR MaLR -278 87 1 256 313 38 19 chr3 169929075 169929309 -48107849 - L1ME LINE L1 -2320 3826 3590 530 310 100 44 chr3 169929530 169929567 -48107591 - L1ME LINE L1 -2923 3223 3190 2119 118 13 0 chr3 169929567 169929871 -48107287 - AluSx SINE Alu -4 308 1 530 310 100 44 chr3 169929871 169930382 -48106776 - L1ME LINE L1 -2956 3190 2645 665 327 123 40 chr3 169930530 169931108 -48106050 + L2 LINE L2 2336 2961 -353 306 261 162 18 chr3 169931236 169931347 -48105811 + L2 LINE L2 3186 3312 -1 2870 252 93 53 chr3 169931472 169932806 -48104352 + L1MEc LINE L1 37 1423 -4973 224 68 0 45 chr3 169932947 169932991 -48104167 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2057 111 0 7 chr3 169932994 169933273 -48103885 - AluSg1 SINE Alu -32 277 1 25 0 0 0 chr3 169933831 169933856 -48103302 + AT_rich Low_complexity Low_complexity 1 25 0 510 296 47 24 chr3 169934683 169934896 -48102262 - LTR33 LTR ERVL 0 521 304 302 292 137 19 chr3 169934936 169935097 -48102061 - MIR SINE MIR -55 207 28 309 326 20 0 chr3 169935135 169935233 -48101925 - L2 LINE L2 -14 3299 3200 21 36 0 0 chr3 169938765 169938793 -48098365 + AT_rich Low_complexity Low_complexity 1 28 0 239 270 157 9 chr3 169939152 169939267 -48097891 + MIR3 SINE MIR 11 142 -66 204 273 39 39 chr3 169939783 169939860 -48097298 + MIR SINE MIR 186 262 0 2148 131 0 0 chr3 169940705 169941002 -48096156 + AluSq SINE Alu 1 297 -16 2039 125 50 0 chr3 169941040 169941337 -48095821 + AluSx SINE Alu 1 312 0 2082 132 0 0 chr3 169942927 169943216 -48093942 + AluSq SINE Alu 1 289 -24 614 240 6 0 chr3 169943216 169943387 -48093771 + (TA)n Simple_repeat Simple_repeat 1 172 0 256 158 0 119 chr3 169943417 169943518 -48093640 - L1MC4 LINE L1 -1340 6702 6614 330 125 28 14 chr3 169943519 169943591 -48093567 + (TA)n Simple_repeat Simple_repeat 2 74 0 247 280 0 0 chr3 169944235 169944285 -48092873 + L2 LINE L2 3136 3185 -87 21 0 0 0 chr3 169944755 169944776 -48092382 + AT_rich Low_complexity Low_complexity 1 21 0 519 252 25 8 chr3 169944934 169945053 -48092105 - MIR SINE MIR -33 229 109 7096 52 7 0 chr3 169945948 169947266 -48089892 - L1PA5 LINE L1 -1 6153 4829 18396 38 0 0 chr3 169947266 169949527 -48087631 + L1PA5 LINE L1 2569 4830 -1316 2757 10 0 0 chr3 169949630 169949930 -48087228 + AluYa5 SINE Alu 1 300 -11 502 329 45 9 chr3 169950093 169950341 -48086817 + MIR SINE MIR 5 261 -1 5808 121 35 51 chr3 169951081 169951953 -48085205 - L1MA1 LINE L1 -47 6255 5424 2245 114 0 13 chr3 169951953 169952269 -48084889 + AluSx SINE Alu 1 312 0 5808 121 35 51 chr3 169952269 169953105 -48084053 - L1MA1 LINE L1 -878 5424 4576 228 325 38 12 chr3 169954746 169954826 -48082332 + L2 LINE L2 3006 3087 -185 28 29 0 0 chr3 169957321 169957356 -48079802 + AT_rich Low_complexity Low_complexity 1 35 0 520 149 67 0 chr3 169957983 169958117 -48079041 - MER96B DNA MER1_type? -243 174 32 2314 67 0 7 chr3 169958292 169958574 -48078584 + AluSq SINE Alu 17 296 -17 330 312 65 27 chr3 169959745 169959931 -48077227 + MIR SINE MIR 25 217 -45 2051 104 3 39 chr3 169961372 169961680 -48075478 + AluSx SINE Alu 1 297 -15 1863 142 3 31 chr3 169961884 169962173 -48074985 - AluSx SINE Alu -29 283 3 249 233 12 70 chr3 169962535 169962621 -48074537 + MER112 DNA MER1_type 1 81 -179 225 196 0 0 chr3 169962757 169962808 -48074350 + (CTATT)n Simple_repeat Simple_repeat 1 51 0 23 33 0 0 chr3 169962943 169962973 -48074185 + AT_rich Low_complexity Low_complexity 1 30 0 2304 106 0 0 chr3 169963448 169963750 -48073408 - AluSc SINE Alu -7 302 1 183 162 0 0 chr3 169964042 169964079 -48073079 + (AATAG)n Simple_repeat Simple_repeat 1 37 0 985 306 33 53 chr3 169964157 169964552 -48072606 - MLT1K LTR MaLR -139 449 63 199 316 0 40 chr3 169964585 169964661 -48072497 + MIR3 SINE MIR 99 171 -37 326 258 57 8 chr3 169964720 169964844 -48072314 + L1MC4 LINE L1 7912 8041 -1 8432 177 102 58 chr3 169964875 169966422 -48070736 + L1MC1 LINE L1 20 1699 -4727 2003 149 9 26 chr3 169966422 169966765 -48070393 + MER1B DNA MER1_type 1 337 0 8432 177 102 58 chr3 169966765 169967462 -48069696 + L1MC1 LINE L1 1699 2364 -4062 1599 170 24 28 chr3 169967468 169967756 -48069402 + AluJo SINE Alu 18 304 -8 33194 97 10 36 chr3 169967799 169973917 -48063241 + L1PA7 LINE L1 199 6154 0 2323 274 14 10 chr3 169973907 169974698 -48062460 + L1MC1 LINE L1 2381 3133 -3293 * 1306 156 0 10 chr3 169974746 169974945 -48062213 - AluJo SINE Alu -33 279 83 8190 205 43 31 chr3 169974947 169976360 -48060798 + L1MC1 LINE L1 3148 4542 -2071 1706 178 0 24 chr3 169976360 169976658 -48060500 + AluJb SINE Alu 1 291 -21 8190 205 43 31 chr3 169976658 169978659 -48058499 + L1MC1 LINE L1 4542 6602 -11 24 32 0 0 chr3 169978817 169978848 -48058310 + AT_rich Low_complexity Low_complexity 1 31 0 1938 151 0 13 chr3 169980553 169980858 -48056300 + AluSx SINE Alu 1 301 -11 269 279 0 0 chr3 169981029 169981965 -48055193 + L2 LINE L2 3205 3272 0 * 4021 139 44 98 chr3 169981089 169982573 -48054585 - pTR5 LTR ERV1 0 2606 1524 204 289 0 0 chr3 169982700 169982745 -48054413 + L2 LINE L2 3214 3258 -14 1533 223 13 35 chr3 169982824 169983197 -48053961 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chr3 169985051 169985073 -48052085 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 169985399 169985420 -48051738 + AT_rich Low_complexity Low_complexity 1 21 0 31 82 0 0 chr3 169985605 169985678 -48051480 + AT_rich Low_complexity Low_complexity 1 73 0 31 26 0 0 chr3 169985709 169985747 -48051411 + AT_rich Low_complexity Low_complexity 1 38 0 624 263 134 13 chr3 169986031 169986255 -48050903 - MIR SINE MIR 0 262 12 1783 146 179 8 chr3 169986501 169986865 -48050293 - MSTA LTR MaLR -2 426 1 416 284 39 24 chr3 169987031 169987158 -48050000 + L2 LINE L2 3143 3271 -1 2151 140 0 0 chr3 169987166 169987474 -48049684 + AluSx SINE Alu 1 308 -4 10148 83 22 0 chr3 169987632 169989837 -48047321 + L1PA7 LINE L1 3881 6149 -5 23 54 0 0 chr3 169990179 169990216 -48046942 + AT_rich Low_complexity Low_complexity 1 37 0 1907 119 113 33 chr3 169990609 169990946 -48046212 - THE1B LTR MaLR 0 364 1 755 266 103 9 chr3 169991056 169991289 -48045869 + MIR SINE MIR 2 256 -6 266 0 0 29 chr3 169992590 169992625 -48044533 + (TG)n Simple_repeat Simple_repeat 2 35 0 22 35 0 0 chr3 169993266 169993295 -48043863 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr3 169993329 169993357 -48043801 + AT_rich Low_complexity Low_complexity 1 28 0 520 323 125 0 chr3 169994515 169994747 -48042411 - MIR SINE MIR -1 261 1 2475 78 21 18 chr3 169995422 169995963 -48041195 - L1PA7 LINE L1 -606 5548 4999 4431 65 8 33 chr3 169995963 169996575 -48040583 + L1PA7 LINE L1 5555 6152 -2 303 243 0 27 chr3 169996712 169996786 -48040372 + L2 LINE L2 3242 3313 0 8069 209 96 54 chr3 169996889 169998307 -48038851 + L1MCa LINE L1 6 1363 -5063 2519 43 7 0 chr3 169998307 169998607 -48038551 + AluY SINE Alu 1 302 -9 8069 209 96 54 chr3 169998607 169999435 -48037723 + L1MCa LINE L1 1363 2155 -4271 2206 117 3 0 chr3 169999435 169999733 -48037425 + AluSx SINE Alu 1 299 -13 8069 209 96 54 chr3 169999733 170000694 -48036464 + L1MCa LINE L1 2155 3341 -3085 * 14161 183 21 5 chr3 170000679 170003897 -48033261 + L1M1 LINE L1 2362 5634 -671 * 24315 26 0 0 chr3 170003864 170006760 -48030398 + L1HS LINE L1 2211 5106 -1040 6246 14 0 1 chr3 170006763 170007473 -48029685 + L1HS LINE L1 5346 6054 -101 1587 80 18 44 chr3 170008039 170008314 -48028844 + L1PA5 LINE L1 5884 6151 -3 180 241 74 0 chr3 170008341 170008395 -48028763 + MIR SINE MIR 151 208 -54 22 35 0 0 chr3 170008395 170008424 -48028734 + AT_rich Low_complexity Low_complexity 1 29 0 232 301 168 12 chr3 170010967 170011140 -48026018 - MIR SINE MIR -10 252 53 442 325 67 71 chr3 170011276 170011772 -48025386 + MLT1K LTR MaLR 87 580 -8 324 259 60 0 chr3 170011858 170011974 -48025184 + L1M4 LINE L1 5195 5317 -829 23 68 0 0 chr3 170011974 170012018 -48025140 + AT_rich Low_complexity Low_complexity 1 44 0 2710 152 34 19 chr3 170012018 170012546 -48024612 - L1MA7 LINE L1 -8 6283 5748 1027 206 125 9 chr3 170012599 170013040 -48024118 - L1M4 LINE L1 -350 5824 5319 22 0 0 0 chr3 170013148 170013170 -48023988 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr3 170013640 170013675 -48023483 + AT_rich Low_complexity Low_complexity 1 35 0 520 149 67 0 chr3 170014302 170014436 -48022722 - MER96B DNA MER1_type? -243 174 32 2314 67 0 7 chr3 170014611 170014893 -48022265 + AluSq SINE Alu 17 296 -17 22 35 0 0 chr3 170015640 170015669 -48021489 + AT_rich Low_complexity Low_complexity 1 29 0 330 312 65 27 chr3 170016063 170016249 -48020909 + MIR SINE MIR 25 217 -45 2051 104 3 39 chr3 170017690 170017998 -48019160 + AluSx SINE Alu 1 297 -15 1863 142 3 31 chr3 170018202 170018491 -48018667 - AluSx SINE Alu -29 283 3 249 233 12 70 chr3 170018853 170018939 -48018219 + MER112 DNA MER1_type 1 81 -179 225 196 0 0 chr3 170019075 170019126 -48018032 + (CTATT)n Simple_repeat Simple_repeat 1 51 0 23 33 0 0 chr3 170019261 170019291 -48017867 + AT_rich Low_complexity Low_complexity 1 30 0 2291 109 0 0 chr3 170019766 170020068 -48017090 - AluSc SINE Alu -7 302 1 183 162 0 0 chr3 170020360 170020397 -48016761 + (AATAG)n Simple_repeat Simple_repeat 1 37 0 1011 304 33 53 chr3 170020475 170020870 -48016288 - MLT1K LTR MaLR -139 449 63 199 316 0 40 chr3 170020903 170020979 -48016179 + MIR3 SINE MIR 99 171 -37 326 258 57 8 chr3 170021038 170021162 -48015996 + L1MC4 LINE L1 7912 8041 -1 8460 177 102 58 chr3 170021193 170022740 -48014418 + L1MC1 LINE L1 20 1699 -4727 2128 134 6 26 chr3 170022740 170023084 -48014074 + MER1B DNA MER1_type 1 337 0 8460 177 102 58 chr3 170023084 170023781 -48013377 + L1MC1 LINE L1 1699 2364 -4062 1599 170 24 28 chr3 170023787 170024075 -48013083 + AluJo SINE Alu 18 304 -8 33216 93 10 36 chr3 170024118 170030234 -48006924 + L1HS LINE L1 199 6152 -3 875 142 0 0 chr3 170030258 170030406 -48006752 + L1MA3 LINE L1 5593 5740 -565 2118 106 9 26 chr3 170030407 170030755 -48006403 + L1MA3 LINE L1 5896 6237 -68 5569 216 4 5 chr3 170030756 170031906 -48005252 - L1P LINE L1 -3288 2858 1708 658 140 9 0 chr3 170031906 170032020 -48005138 + L1PA13 LINE L1 6045 6159 -4 5569 216 4 5 chr3 170032020 170032048 -48005110 - L1P LINE L1 -4438 1708 1681 * 7782 208 31 23 chr3 170032038 170032793 -48004365 + L1MC1 LINE L1 3305 4053 -2560 1442 179 127 7 chr3 170032793 170033100 -48004058 + MER7A DNA MER2_type 3 344 -2 7782 208 31 23 chr3 170033100 170035199 -48001959 + L1MC1 LINE L1 4053 6178 -435 756 212 40 13 chr3 170035403 170035632 -48001526 + L1M1 LINE L1 2856 3153 -4479 2315 121 113 15 chr3 170035635 170036025 -48001133 - MSTA LTR MaLR 0 428 1 8755 172 37 18 chr3 170036040 170037643 -47999515 - MSTA-int LTR MaLR -16 1635 1 2188 147 111 10 chr3 170037643 170038032 -47999126 - MSTA LTR MaLR 0 428 1 2461 241 71 26 chr3 170038034 170039366 -47997792 + L1MEc LINE L1 1826 3188 -3027 886 264 34 17 chr3 170039459 170039751 -47997407 + L1MEc LINE L1 3525 3821 -2394 686 249 32 14 chr3 170039894 170040111 -47997047 - L1ME3A LINE L1 -5 6165 5945 502 296 138 19 chr3 170040290 170040668 -47996490 - Charlie7 DNA MER1_type -1939 673 251 302 114 0 0 chr3 170040675 170040719 -47996439 - MLT2D LTR ERVL 0 520 477 418 126 7 49 chr3 170040737 170040880 -47996278 + (TA)n Simple_repeat Simple_repeat 1 137 0 1713 213 19 19 chr3 170040962 170041328 -47995830 - MLT2D LTR ERVL -48 366 1 305 217 206 60 chr3 170042591 170042775 -47994383 + MIR SINE MIR 1 211 -51 739 206 79 24 chr3 170043053 170043218 -47993940 + FAM SINE Alu 1 174 -1 1258 300 6 3 chr3 170043289 170043646 -47993512 + HsTC2 DNA Tc2 129 486 -1412 870 213 60 86 chr3 170043684 170044101 -47993057 + HsTC2 DNA Tc2 1316 1897 -1 814 224 204 4 chr3 170044127 170044377 -47992781 - MER5C DNA MER1_type -14 310 11 207 301 0 48 chr3 170045124 170045207 -47991951 - MIR SINE MIR -79 183 105 207 0 0 0 chr3 170045323 170045346 -47991812 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1952 120 3 38 chr3 170045348 170045639 -47991519 - AluSx SINE Alu -23 289 9 2831 13 0 0 chr3 170046013 170046324 -47990834 - AluYa5 SINE Alu 0 311 1 194 358 97 30 chr3 170048029 170048163 -47988995 - L2 LINE L2 -3 3310 3168 391 327 19 31 chr3 170049183 170049374 -47987784 + MIR SINE MIR 19 206 -56 441 240 45 62 chr3 170049839 170050018 -47987140 + MER5B DNA MER1_type 1 176 -2 1253 189 149 13 chr3 170050202 170050503 -47986655 - MER2 DNA MER2_type -2 342 1 232 171 341 8 chr3 170050532 170050655 -47986503 + Charlie7 DNA MER1_type 2433 2596 -16 2511 55 0 10 chr3 170051273 170051583 -47985575 - AluY SINE Alu -4 307 1 2208 167 52 10 chr3 170053170 170053577 -47983581 + MSTB1 LTR MaLR 7 430 -2 26 30 0 0 chr3 170053694 170053727 -47983431 + AT_rich Low_complexity Low_complexity 1 33 0 333 359 35 7 chr3 170054023 170054168 -47982990 - MIR SINE MIR -67 195 47 7766 213 38 31 chr3 170054479 170057136 -47980022 + L1MA5A LINE L1 1 2637 -4151 2281 111 0 0 chr3 170057136 170057433 -47979725 + AluSg SINE Alu 2 298 -12 7766 213 38 31 chr3 170057433 170059766 -47977392 + L1MA5A LINE L1 2637 4650 -2138 4489 58 26 16 chr3 170059766 170060347 -47976811 - LTR14C LTR ERVK 0 587 1 7766 213 38 31 chr3 170060347 170060590 -47976568 + L1MA5A LINE L1 4650 4890 -1898 37822 90 7 10 chr3 170060590 170066789 -47970369 + L1PA6 LINE L1 2 6154 0 5681 169 11 10 chr3 170066788 170068229 -47968929 + L1MA5A LINE L1 4875 6317 -622 * 355 214 155 0 chr3 170068229 170068313 -47968845 + LTR47A LTR ERVL 270 366 -86 1231 170 5 0 chr3 170068314 170068532 -47968626 + L1MA5A LINE L1 6304 6522 -417 315 159 0 0 chr3 170068536 170068599 -47968559 + L1MA5A LINE L1 6877 6939 0 21 57 0 0 chr3 170068666 170068701 -47968457 + AT_rich Low_complexity Low_complexity 1 35 0 265 255 31 41 chr3 170068790 170068888 -47968270 - MER117 DNA MER1_type -65 132 36 447 337 66 7 chr3 170070040 170070394 -47966764 - MLT1I LTR MaLR -2 407 1 30 45 0 0 chr3 170070784 170070828 -47966330 + AT_rich Low_complexity Low_complexity 1 44 0 1027 180 11 11 chr3 170072115 170072298 -47964860 + MER20 DNA MER1_type 37 219 0 1100 284 50 38 chr3 170072299 170072727 -47964431 - MLT1H LTR MaLR -70 479 3 2015 153 125 13 chr3 170072972 170073357 -47963801 - MSTA LTR MaLR 0 428 1 6843 140 29 20 chr3 170073357 170074479 -47962679 - MSTA-int LTR MaLR 0 1580 449 927 106 0 7 chr3 170074468 170074609 -47962549 - MSTA-int LTR MaLR -1511 140 1 * 2292 120 126 8 chr3 170074610 170074992 -47962166 - MSTA LTR MaLR -1 427 1 261 314 0 12 chr3 170075144 170075230 -47961928 + GA-rich Low_complexity Low_complexity 1 85 0 338 324 180 30 chr3 170075595 170076156 -47961002 - L2 LINE L2 -1064 2250 1606 21 0 0 0 chr3 170076424 170076445 -47960713 + AT_rich Low_complexity Low_complexity 1 21 0 226 320 51 74 chr3 170076787 170076962 -47960196 - L2 LINE L2 -217 3055 2885 1514 158 47 32 chr3 170076997 170077317 -47959841 + AluJb SINE Alu 1 324 0 261 234 0 0 chr3 170078554 170078618 -47958540 + CT-rich Low_complexity Low_complexity 1 64 0 33 43 0 0 chr3 170078670 170078717 -47958441 + AT_rich Low_complexity Low_complexity 1 47 0 326 287 246 47 chr3 170079482 170079799 -47957359 + L2 LINE L2 2934 3313 0 268 321 92 46 chr3 170079808 170079939 -47957219 + L2 LINE L2 3134 3270 -2 32 0 0 0 chr3 170079952 170079984 -47957174 + AT_rich Low_complexity Low_complexity 1 32 0 237 195 0 0 chr3 170080847 170080888 -47956270 + MIR3 SINE MIR 168 208 0 21298 56 11 2 chr3 170081122 170084669 -47952489 - L1PA7 LINE L1 -18 6136 2563 4102 68 11 0 chr3 170084669 170085466 -47951692 + L1P2 LINE L1 4835 5637 -517 15198 52 7 16 chr3 170085585 170087588 -47949570 + L1PA3 LINE L1 3123 5106 -1040 3824 108 39 2 chr3 170087591 170088230 -47948928 + L1PA3 LINE L1 5346 6008 -147 10453 65 1 2 chr3 170088504 170089883 -47947275 - L1P LINE L1 -1901 4245 2869 313 262 165 0 chr3 170089973 170090076 -47947082 - MER103 DNA DNA -13 153 34 23 0 0 0 chr3 170090368 170090391 -47946767 + AT_rich Low_complexity Low_complexity 1 23 0 400 260 10 0 chr3 170090475 170090571 -47946587 - MER94 DNA DNA -37 97 1 11168 69 7 0 chr3 170091058 170092965 -47944193 + L1P2 LINE L1 3884 5804 -350 1489 288 73 17 chr3 170093315 170094013 -47943145 - L1MEc LINE L1 -5623 773 37 306 261 162 18 chr3 170094138 170094249 -47942909 - L2 LINE L2 -1 3312 3186 604 322 128 45 chr3 170094377 170094955 -47942203 - L2 LINE L2 -353 2961 2336 440 323 70 38 chr3 170095103 170095546 -47941612 + L1M4 LINE L1 2645 3101 -3045 6674 53 26 20 chr3 170095754 170096933 -47940225 + L1PA7 LINE L1 4964 6152 -2 303 243 0 27 chr3 170097070 170097144 -47940014 + L2 LINE L2 3242 3313 0 492 167 28 28 chr3 170097247 170097355 -47939803 + L1MCa LINE L1 6 113 -6313 5306 89 17 11 chr3 170097478 170098433 -47938725 + L1P3 LINE L1 4583 5548 -606 2312 257 65 39 chr3 170098855 170099879 -47937279 - L1M4 LINE L1 -946 5200 4150 330 312 65 27 chr3 170100067 170100253 -47936905 - MIR SINE MIR -45 217 25 2217 81 17 10 chr3 170101666 170101963 -47935195 + AluSq SINE Alu 1 299 -14 496 313 122 51 chr3 170102347 170102880 -47934278 + L2 LINE L2 1194 1764 -1550 6254 213 44 31 chr3 170103156 170103655 -47933503 - L1 LINE L1 -1290 4856 4365 1883 113 11 14 chr3 170103655 170103930 -47933228 - AluSq SINE Alu -16 297 24 6254 213 44 31 chr3 170103930 170103984 -47933174 - L1 LINE L1 -1781 4365 4313 2116 115 0 11 chr3 170103984 170104295 -47932863 - AluSx SINE Alu 0 308 1 6254 213 44 31 chr3 170104295 170105528 -47931630 - L1 LINE L1 -1833 4313 2901 2350 103 0 0 chr3 170105528 170105839 -47931319 - AluY SINE Alu 0 311 1 6254 213 44 31 chr3 170105839 170106071 -47931087 - L1 LINE L1 -3245 2901 2674 6883 66 5 3 chr3 170106186 170107083 -47930075 + L1PA5 LINE L1 5254 6151 -3 180 241 74 0 chr3 170107110 170107164 -47929994 + MIR SINE MIR 151 208 -54 22 35 0 0 chr3 170107164 170107193 -47929965 + AT_rich Low_complexity Low_complexity 1 29 0 238 307 10 0 chr3 170109286 170109387 -47927771 - L1MEd LINE L1 -4501 2039 1938 270 362 66 20 chr3 170110494 170110646 -47926512 + MIR SINE MIR 34 192 -70 13639 178 19 24 chr3 170111567 170113861 -47923297 + L1M1 LINE L1 6 2290 -5275 2159 78 0 3 chr3 170113861 170114154 -47923004 - L1PA8 LINE L1 -9 6163 5872 13639 178 19 24 chr3 170114154 170114356 -47922802 + L1M1 LINE L1 2290 2491 -5074 11269 158 20 38 chr3 170114373 170115387 -47921771 + L1M1 LINE L1 2705 3736 -3829 2089 134 0 3 chr3 170115387 170115700 -47921458 + AluSx SINE Alu 1 312 0 11269 158 20 38 chr3 170115700 170118014 -47919144 + L1M1 LINE L1 3736 6091 -1474 2327 137 28 8 chr3 170118014 170118371 -47918787 + THE1B LTR MaLR 1 364 0 11466 97 3 19 chr3 170118371 170119976 -47917182 + THE1B-int LTR MaLR 1 1580 0 2502 117 5 19 chr3 170119976 170120345 -47916813 + THE1B LTR MaLR 1 364 0 11269 158 20 38 chr3 170120345 170120386 -47916772 + L1M1 LINE L1 5981 6021 -1544 412 240 54 0 chr3 170120385 170120514 -47916644 - L1M4 LINE L1 -921 5225 5090 * 529 280 130 25 chr3 170120777 170121372 -47915786 - L1ME3 LINE L1 -222 5948 5289 543 184 0 0 chr3 170121393 170121491 -47915667 - AluSg/x SINE Alu -11 301 204 255 294 20 0 chr3 170121737 170121839 -47915319 - L1P LINE L1 -1143 5003 4900 613 286 76 80 chr3 170121950 170122554 -47914604 - L1MEd LINE L1 -5029 1501 900 2104 141 0 0 chr3 170122879 170123178 -47913980 - AluSx SINE Alu -13 299 1 230 139 0 0 chr3 170124742 170124778 -47912380 + MER5A DNA MER1_type 4 39 -150 692 165 0 39 chr3 170124779 170124906 -47912252 + FRAM SINE Alu 37 158 -18 208 182 45 0 chr3 170124906 170124950 -47912208 + MER5A DNA MER1_type 67 112 -77 584 218 14 139 chr3 170125014 170125164 -47911994 + MER5A DNA MER1_type 1 118 -71 1731 127 58 14 chr3 170125164 170125478 -47911680 - AluSg SINE Alu 0 310 1 584 218 14 139 chr3 170125478 170125543 -47911615 + MER5A DNA MER1_type 117 189 0 301 256 124 23 chr3 170126277 170126406 -47910752 + L1MC4 LINE L1 5618 5759 -2049 1736 188 42 26 chr3 170126493 170126877 -47910281 - MLT1B LTR MaLR 0 390 1 354 294 87 0 chr3 170127194 170127320 -47909838 + MIR SINE MIR 112 248 -14 225 108 0 0 chr3 170127368 170127405 -47909753 + (CA)n Simple_repeat Simple_repeat 2 38 0 324 295 42 52 chr3 170128175 170128368 -47908790 + MIR SINE MIR 20 210 -52 356 315 36 83 chr3 170128482 170128758 -47908400 - L2 LINE L2 -54 3218 2956 235 225 99 0 chr3 170128909 170128980 -47908178 - MIR SINE MIR -128 134 57 38 0 0 0 chr3 170129017 170129055 -47908103 + AT_rich Low_complexity Low_complexity 1 38 0 304 253 42 42 chr3 170129098 170129193 -47907965 + L2 LINE L2 3178 3272 0 359 303 183 36 chr3 170130208 170130459 -47906699 + L2 LINE L2 2985 3272 0 2368 170 27 52 chr3 170130493 170131016 -47906142 - LTR54 LTR ERV1 0 510 1 290 284 224 0 chr3 170132885 170133019 -47904139 - MIR SINE MIR -92 170 7 301 221 26 0 chr3 170133078 170133155 -47904003 + L1MC4 LINE L1 6613 6691 -1351 2167 125 10 0 chr3 170133172 170133476 -47903682 - AluSx SINE Alu -5 307 1 190 186 0 34 chr3 170134409 170134468 -47902690 + A-rich Low_complexity Low_complexity 2 58 0 1813 160 17 42 chr3 170135199 170135555 -47901603 - MER7A DNA MER2_type -1 345 1 2195 129 3 0 chr3 170135685 170135987 -47901171 + AluSx SINE Alu 2 304 -8 2277 109 0 10 chr3 170135990 170136301 -47900857 + AluSg SINE Alu 1 308 -2 4743 44 0 0 chr3 170136633 170137226 -47899932 + HERV17 LTR ERV1 5427 6019 -2607 268 77 0 0 chr3 170137219 170137258 -47899900 + HERV17 LTR ERV1 7510 7548 -1078 * 1913 98 3 17 chr3 170137248 170137544 -47899614 + HERV17 LTR ERV1 8335 8626 0 2402 57 28 3 chr3 170137544 170137862 -47899296 + LTR17 LTR ERV1 1 326 -454 243 0 0 0 chr3 170137862 170137889 -47899269 + (A)n Simple_repeat Simple_repeat 1 27 0 1029 123 0 13 chr3 170138188 170138343 -47898815 - AluSp/q SINE Alu -2 311 159 1911 137 4 0 chr3 170138683 170138982 -47898176 - AluSc SINE Alu 0 300 1 196 409 0 0 chr3 170139415 170139508 -47897650 - L2 LINE L2 -456 2858 2766 362 219 146 0 chr3 170139557 170139680 -47897478 + HsTC2 DNA Tc2 1 141 -1757 606 170 73 24 chr3 170139683 170139848 -47897310 + HsTC2 DNA Tc2 1680 1852 -46 350 375 64 21 chr3 170139898 170140178 -47896980 - L2 LINE L2 -577 2737 2446 373 260 10 0 chr3 170141468 170141564 -47895594 + MER94 DNA DNA 1 97 -37 23 0 0 0 chr3 170141648 170141671 -47895487 + AT_rich Low_complexity Low_complexity 1 23 0 282 255 167 0 chr3 170141963 170142065 -47895093 + MER103 DNA DNA 34 152 -14 20221 44 7 14 chr3 170142155 170145439 -47891719 + L1PA5 LINE L1 2869 6146 -8 4769 244 46 13 chr3 170145598 170146809 -47890349 + L1MA5A LINE L1 132 1342 -5507 2922 234 38 8 chr3 170146807 170147964 -47889194 + L1MA5A LINE L1 1996 3190 -3658 * 1369 131 5 40 chr3 170147965 170148187 -47888971 + AluSx SINE Alu 1 214 -98 479 250 0 8 chr3 170148288 170148412 -47888746 + AluSp/q SINE Alu 175 297 -16 5409 166 33 10 chr3 170148443 170150299 -47886859 + L1MA5A LINE L1 5104 6995 -4 29 28 0 0 chr3 170151221 170151257 -47885901 + AT_rich Low_complexity Low_complexity 1 36 0 4308 101 59 12 chr3 170151316 170151992 -47885166 - THE1C-int LTR MaLR -872 708 1 2612 102 8 5 chr3 170151992 170152364 -47884794 - THE1C LTR MaLR 0 375 3 467 312 91 13 chr3 170152518 170152749 -47884409 + MIR SINE MIR 3 251 -11 202 283 17 0 chr3 170152945 170153005 -47884153 + CT-rich Low_complexity Low_complexity 4 64 0 1566 194 25 66 chr3 170153205 170153440 -47883718 - MLT1B LTR MaLR 0 390 178 2330 110 0 0 chr3 170153440 170153741 -47883417 - AluSx SINE Alu -11 301 1 1566 194 25 66 chr3 170153741 170153912 -47883246 - MLT1B LTR MaLR -212 178 1 1018 210 137 27 chr3 170154148 170154477 -47882681 - MLT1A1 LTR MaLR 0 365 1 2312 164 62 38 chr3 170155111 170155231 -47881927 + MLT2B1 LTR ERVL 2 118 -402 2368 88 0 3 chr3 170155231 170155538 -47881620 + AluSc SINE Alu 1 306 -3 2312 164 62 38 chr3 170155538 170155628 -47881530 + MLT2B1 LTR ERVL 118 204 -316 2339 80 0 13 chr3 170155628 170155927 -47881231 + AluY SINE Alu 1 295 -16 2312 164 62 38 chr3 170155927 170156214 -47880944 + MLT2B1 LTR ERVL 204 512 -8 1445 104 15 116 chr3 170156390 170156658 -47880500 + AluJb SINE Alu 57 297 -15 2308 160 43 5 chr3 170157383 170157820 -47879338 + MER31A LTR ERV1 5 458 -27 928 218 84 3 chr3 170157938 170158236 -47878922 + MER33 DNA MER1_type 2 323 -1 30 45 0 0 chr3 170158672 170158716 -47878442 + AT_rich Low_complexity Low_complexity 1 44 0 2172 149 5 26 chr3 170158831 170159214 -47877944 + THE1C LTR MaLR 1 375 0 9410 113 30 41 chr3 170159214 170159625 -47877533 + THE1C-int LTR MaLR 1 415 -1165 2097 133 20 0 chr3 170159625 170159925 -47877233 - AluSq SINE Alu -7 306 1 9410 113 30 41 chr3 170159925 170160005 -47877153 + THE1C-int LTR MaLR 415 494 -1086 3748 101 0 8 chr3 170160005 170160520 -47876638 + MER9 LTR ERVK 1 511 0 9410 113 30 41 chr3 170160520 170161625 -47875533 + THE1C-int LTR MaLR 494 1580 0 2166 142 13 26 chr3 170161625 170162005 -47875153 + THE1C LTR MaLR 1 375 0 303 277 54 9 chr3 170162836 170162941 -47874217 + MIR SINE MIR 45 157 -105 1084 199 80 57 chr3 170162941 170163277 -47873881 - MER2 DNA MER2_type 0 344 1 2040 137 24 0 chr3 170163329 170163622 -47873536 - AluSx SINE Alu -12 300 1 2184 210 65 11 chr3 170164038 170164562 -47872596 + MER44D DNA MER2_type 181 604 -1 2012 143 47 25 chr3 170164617 170164982 -47872176 - THE1C LTR MaLR -2 373 1 2831 115 37 51 chr3 170165493 170165824 -47871334 - MER4B LTR ERV1 -71 539 205 186 43 0 0 chr3 170165824 170165847 -47871311 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1804 139 75 0 chr3 170165849 170166115 -47871043 - AluSg SINE Alu -24 286 1 2831 115 37 51 chr3 170166115 170166327 -47870831 - MER4B LTR ERV1 -406 204 1 273 241 0 0 chr3 170166538 170166596 -47870562 - MLT1G LTR MaLR -197 393 336 366 235 105 37 chr3 170166668 170166830 -47870328 - MLT1G LTR MaLR -289 301 129 391 222 91 20 chr3 170167081 170167180 -47869978 + L2 LINE L2 3203 3308 -5 * 476 280 85 47 chr3 170167163 170167274 -47869884 - MIR SINE MIR -10 252 147 2202 109 0 0 chr3 170167274 170167596 -47869562 - AluSq SINE Alu 0 323 2 476 280 85 47 chr3 170167596 170167694 -47869464 - MIR SINE MIR -115 147 34 552 369 125 20 chr3 170167759 170168361 -47868797 + L2 LINE L2 2086 2750 -564 347 317 114 6 chr3 170168405 170168572 -47868586 + L2 LINE L2 3127 3311 -2 749 95 0 0 chr3 170169043 170169138 -47868020 - AluSg/x SINE Alu -119 193 99 1759 172 67 123 chr3 170169350 170170052 -47867106 + MER4A LTR ERV1 2 664 0 304 335 88 26 chr3 170170914 170171108 -47866050 + MIR3 SINE MIR 1 206 -2 1771 131 86 43 chr3 170171307 170171681 -47865477 - MLT1B LTR MaLR 0 390 1 46 33 0 0 chr3 170171690 170171750 -47865408 + AT_rich Low_complexity Low_complexity 1 60 0 814 160 0 8 chr3 170171753 170171878 -47865280 - FLAM_C SINE Alu -19 124 1 2045 147 7 0 chr3 170172453 170172753 -47864405 + AluSx SINE Alu 1 302 -10 262 268 27 90 chr3 170173271 170173428 -47863730 - MIR SINE MIR -65 143 19 203 306 56 14 chr3 170173873 170173945 -47863213 + L2 LINE L2 3229 3303 -10 925 261 197 45 chr3 170173975 170174568 -47862590 + L2 LINE L2 2617 3304 -9 2207 116 3 0 chr3 170174581 170174873 -47862285 + AluSg SINE Alu 1 293 -17 302 224 12 0 chr3 170175023 170175108 -47862050 + GA-rich Low_complexity Low_complexity 1 86 0 2220 113 13 0 chr3 170175132 170175434 -47861724 + AluSx SINE Alu 1 306 -6 651 191 12 41 chr3 170175480 170175654 -47861504 - MLT1A1 LTR MaLR 0 374 227 782 165 105 51 chr3 170175670 170176056 -47861102 - LTR7 LTR ERV1 0 450 1 690 203 0 44 chr3 170176056 170176086 -47861072 - MLT1A1 LTR MaLR -203 162 132 1754 181 3 57 chr3 170176086 170176472 -47860686 - MLT1A1 LTR MaLR 0 365 1 690 203 0 44 chr3 170176472 170176611 -47860547 - MLT1A1 LTR MaLR -233 132 1 3605 148 67 95 chr3 170177256 170178137 -47859021 + MER21A LTR ERV1 11 866 -65 2156 113 24 0 chr3 170178137 170178429 -47858729 + AluSq SINE Alu 1 299 -14 3605 148 67 95 chr3 170178429 170178469 -47858689 + MER21A LTR ERV1 866 906 -25 341 288 48 8 chr3 170179304 170179429 -47857729 + L3 LINE CR1 1161 1290 -287 910 95 0 9 chr3 170179530 170179646 -47857512 - AluSq SINE Alu -146 167 53 319 284 0 0 chr3 170179998 170180065 -47857093 + MIR SINE MIR 16 82 -180 1879 141 7 7 chr3 170180146 170180430 -47856728 + AluSx SINE Alu 1 284 -28 211 394 0 10 chr3 170180692 170180791 -47856367 + L2 LINE L2 2277 2374 -940 339 346 19 0 chr3 170181233 170181337 -47855821 + L2 LINE L2 2925 3030 -242 241 315 27 0 chr3 170181535 170181608 -47855550 + L2 LINE L2 3198 3272 0 558 274 225 41 chr3 170181813 170182182 -47854976 - L2 LINE L2 -2 3311 2875 339 147 15 15 chr3 170182468 170182536 -47854622 - LTR24B LTR ERV1 -7 569 502 1949 198 37 41 chr3 170182537 170183073 -47854085 - LTR24B-int LTR ERV1 -2104 4227 3694 1105 207 56 54 chr3 170183279 170183809 -47853349 - LTR24B-int LTR ERV1 -3059 3272 1225 477 309 154 13 chr3 170183809 170184042 -47853116 - MER34C LTR ERV1 -155 430 165 524 206 110 20 chr3 170184042 170184130 -47853028 - LTR24B-int LTR ERV1 -4124 999 920 206 32 32 0 chr3 170184130 170184161 -47852997 + (TTG)n Simple_repeat Simple_repeat 2 33 0 524 206 110 20 chr3 170184161 170184218 -47852940 - LTR24B-int LTR ERV1 -4203 920 841 693 185 93 25 chr3 170184302 170184464 -47852694 - LTR24B-int LTR ERV1 -4787 1544 1372 317 246 25 42 chr3 170184575 170184693 -47852465 - LTR24B-int LTR ERV1 -4933 1398 1283 229 288 15 15 chr3 170184693 170184759 -47852399 - tRNA-Glu-GAG tRNA tRNA 0 75 10 252 247 52 13 chr3 170184766 170184843 -47852315 - LTR24B-int LTR ERV1 -5122 1209 1130 2167 110 0 13 chr3 170185380 170185697 -47851461 - AluSq SINE Alu 0 313 1 1225 223 56 60 chr3 170185865 170186463 -47850695 - LTR24B-int LTR ERV1 -4386 737 1 3566 142 16 4 chr3 170186463 170187025 -47850133 - LTR24B LTR ERV1 -7 569 1 605 282 44 6 chr3 170188608 170188789 -47848369 + MER117 DNA MER1_type 4 191 -6 53 93 0 0 chr3 170188961 170189112 -47848046 + AT_rich Low_complexity Low_complexity 1 151 0 1474 268 86 61 chr3 170189254 170189998 -47847160 - L2 LINE L2 -197 3116 2335 259 298 16 8 chr3 170190008 170190026 -47847132 - L1MA10 LINE L1 -3 6331 6314 1179 236 22 49 chr3 170190026 170190394 -47846764 - L1ME1 LINE L1 -12 6154 5797 * 1795 214 87 4 chr3 170190375 170190894 -47846264 - L1ME1 LINE L1 -846 5300 4739 408 288 129 0 chr3 170190895 170191058 -47846100 + LTR33A LTR ERVL 328 511 -12 587 266 38 38 chr3 170191069 170191253 -47845905 - MIR SINE MIR -77 185 2 1509 249 80 20 chr3 170191255 170191745 -47845413 - L2 LINE L2 -1080 2234 1716 532 217 0 0 chr3 170192361 170192453 -47844705 - Tigger7 DNA MER2_type 0 2487 2396 * 1325 133 9 9 chr3 170192447 170192673 -47844485 - Tigger7 DNA MER2_type -1961 526 301 850 326 52 14 chr3 170192874 170193239 -47843919 - L2 LINE L2 -1736 1578 1200 779 205 11 10 chr3 170193342 170193540 -47843618 + L1MC4 LINE L1 7619 7713 -95 543 195 34 0 chr3 170193565 170193683 -47843475 - L1MA9 LINE L1 -2 6310 6189 874 217 33 24 chr3 170193938 170194150 -47843008 - MER20 DNA MER1_type 0 219 6 235 133 0 83 chr3 170194200 170194260 -47842898 - L1MC4 LINE L1 -1330 6712 6658 252 213 53 0 chr3 170194263 170194338 -47842820 + (TA)n Simple_repeat Simple_repeat 2 80 0 200 195 0 0 chr3 170194337 170194378 -47842780 + GA-rich Low_complexity Low_complexity 2 42 0 * 240 295 8 33 chr3 170194379 170194501 -47842657 + L1MC4 LINE L1 7918 8036 -6 457 271 165 21 chr3 170194827 170195063 -47842095 + L2 LINE L2 2434 2703 -611 513 179 0 0 chr3 170195109 170195204 -47841954 + L1MB1 LINE L1 6072 6166 -2 24 32 0 0 chr3 170195256 170195287 -47841871 + AT_rich Low_complexity Low_complexity 1 31 0 522 273 88 20 chr3 170196352 170196601 -47840557 - L1MC/D LINE L1 -2225 5517 5252 510 17 0 0 chr3 170196675 170196734 -47840424 + (TA)n Simple_repeat Simple_repeat 2 60 0 417 350 66 48 chr3 170196801 170197102 -47840056 - L1MC/D LINE L1 -944 5136 4842 2392 87 3 3 chr3 170197102 170197411 -47839747 - AluSp SINE Alu -4 309 1 417 350 66 48 chr3 170197411 170197780 -47839378 - L1MC/D LINE L1 -1238 4842 4454 2039 143 0 13 chr3 170197902 170198217 -47838941 - AluSx SINE Alu -1 311 1 943 99 7 21 chr3 170198293 170198435 -47838723 - AluSp/q SINE Alu -6 307 168 361 346 82 20 chr3 170198465 170198818 -47838340 - L1MC/D LINE L1 -2183 3897 3523 2016 108 3 14 chr3 170198940 170199236 -47837922 - AluSc SINE Alu -16 293 1 334 113 16 32 chr3 170199313 170199375 -47837783 - Alu SINE Alu -1 300 240 862 207 133 24 chr3 170199377 170199759 -47837399 - L1MC/D LINE L1 -2829 3251 2828 * 884 215 39 55 chr3 170199751 170200081 -47837077 - L1MC/D LINE L1 -4870 1210 886 493 200 21 0 chr3 170200099 170200194 -47836964 + Tigger3(Golem) DNA MER2_type 1 97 -2932 2253 109 0 7 chr3 170200195 170200499 -47836659 + AluSq SINE Alu 1 302 -11 4186 122 26 51 chr3 170200514 170201282 -47835876 + Tigger3(Golem) DNA MER2_type 2277 3025 -4 500 281 54 56 chr3 170201284 170201694 -47835464 - L1MC/D LINE L1 -5208 875 467 357 306 69 19 chr3 170201874 170202034 -47835124 - L1MC/D LINE L1 -5583 487 320 357 289 70 31 chr3 170202413 170202700 -47834458 - HAL1b LINE L1 -968 380 83 939 221 90 43 chr3 170202944 170203243 -47833915 + MLT1C LTR MaLR 6 318 -149 1361 179 45 26 chr3 170203243 170203427 -47833731 + MLT1C-int LTR MaLR 52 246 -1125 426 20 0 0 chr3 170203427 170203478 -47833680 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 1361 179 45 26 chr3 170203478 170203605 -47833553 + MLT1C-int LTR MaLR 246 369 -1002 2470 153 2 12 chr3 170203627 170204058 -47833100 - L1PA15 LINE L1 -4 6161 5735 26 0 0 0 chr3 170205300 170205326 -47831832 + AT_rich Low_complexity Low_complexity 1 26 0 234 0 0 0 chr3 170206209 170206235 -47830923 + (T)n Simple_repeat Simple_repeat 1 26 0 321 89 0 0 chr3 170207206 170207251 -47829907 + (GGA)n Simple_repeat Simple_repeat 2 46 0 192 152 0 0 chr3 170207352 170207385 -47829773 + A-rich Low_complexity Low_complexity 1 33 0 348 88 0 0 chr3 170208010 170208067 -47829091 + (T)n Simple_repeat Simple_repeat 1 57 0 766 208 0 14 chr3 170209264 170209408 -47827750 - THE1C LTR MaLR -233 142 1 4192 131 8 2 chr3 170209500 170210303 -47826855 - L1PA15 LINE L1 -288 5877 5070 2056 228 47 4 chr3 170210299 170210763 -47826395 + MLT1C-int LTR MaLR 354 837 -534 * 2201 139 24 24 chr3 170210764 170211139 -47826019 - THE1C LTR MaLR 0 375 1 8418 138 54 9 chr3 170211139 170212478 -47824680 - THE1C-int LTR MaLR 0 1580 182 2918 146 90 6 chr3 170212583 170213104 -47824054 - THE1C-int LTR MaLR -1015 565 1 2059 149 35 19 chr3 170213104 170213473 -47823685 - THE1C LTR MaLR 0 375 1 304 137 0 0 chr3 170213473 170213524 -47823634 + MLT1C-int LTR MaLR 834 884 -487 974 268 55 0 chr3 170213603 170213838 -47823320 + MLT1C-int LTR MaLR 877 1124 -247 481 154 49 15 chr3 170213871 170213981 -47823177 + MLT1C LTR MaLR 381 467 0 1766 167 16 0 chr3 170214376 170214681 -47822477 + AluSq SINE Alu 3 312 -1 1780 244 58 49 chr3 170214691 170215153 -47822005 + L1ME3A LINE L1 5425 5901 -269 2101 126 3 3 chr3 170215153 170215447 -47821711 + AluSx SINE Alu 3 296 -16 1780 244 58 49 chr3 170215447 170215708 -47821450 + L1ME3A LINE L1 5901 6158 -12 5369 24 2 2 chr3 170216019 170216646 -47820512 - L1PA3 LINE L1 -3 6152 5526 4388 26 4 14 chr3 170216646 170217335 -47819823 + L1PA3 LINE L1 4852 5536 -619 220 125 25 0 chr3 170217931 170217971 -47819187 + A-rich Low_complexity Low_complexity 6 46 0 244 232 54 62 chr3 170218155 170218267 -47818891 + L2 LINE L2 3203 3313 0 1965 129 23 20 chr3 170218833 170219135 -47818023 + AluSg SINE Alu 1 303 -7 612 330 71 4 chr3 170219207 170219446 -47817712 - MIR SINE MIR -3 259 5 340 303 18 18 chr3 170220237 170220346 -47816812 + MIR3 SINE MIR 94 202 -6 529 221 31 132 chr3 170220547 170220904 -47816254 - MLT1A1 LTR MaLR -45 422 10 1426 169 3 29 chr3 170221033 170221341 -47815817 + AluY SINE Alu 2 301 -10 589 274 17 80 chr3 170221431 170221532 -47815626 - L1M4 LINE L1 -1794 4352 4246 1949 139 3 10 chr3 170221532 170221834 -47815324 - AluSx SINE Alu -12 300 1 589 274 17 80 chr3 170221834 170222031 -47815127 - L1M4 LINE L1 -1900 4246 4073 21 0 0 0 chr3 170222054 170222075 -47815083 + AT_rich Low_complexity Low_complexity 1 21 0 318 308 132 35 chr3 170222415 170222642 -47814516 + L1MCa LINE L1 782 1030 -5396 2034 91 70 0 chr3 170222650 170222937 -47814221 + AluSg SINE Alu 3 309 -1 466 125 64 22 chr3 170222977 170223438 -47813720 + (TA)n Simple_repeat Simple_repeat 1 480 0 600 103 39 13 chr3 170223443 170223599 -47813559 + (TTATA)n Simple_repeat Simple_repeat 5 164 0 621 200 75 19 chr3 170223722 170223882 -47813276 + MLT1B LTR MaLR 1 169 -221 2125 103 7 3 chr3 170223892 170224182 -47812976 + AluSx SINE Alu 1 291 -21 231 325 24 0 chr3 170224496 170224579 -47812579 + L2 LINE L2 2915 2999 -273 1546 224 60 36 chr3 170224588 170225035 -47812123 - MLT1C LTR MaLR -4 463 6 289 344 88 8 chr3 170225175 170225300 -47811858 + L2 LINE L2 3138 3272 0 209 333 26 26 chr3 170225923 170226001 -47811157 - MIR3 SINE MIR -19 189 112 822 292 104 27 chr3 170226426 170226905 -47810253 + MER113 DNA MER1_type? 6 521 0 2373 97 0 3 chr3 170227192 170227502 -47809656 - AluSg SINE Alu -1 309 1 2861 224 30 47 chr3 170227526 170228365 -47808793 + L1ME1 LINE L1 5337 6161 -5 241 323 152 44 chr3 170231597 170231788 -47805370 + L2 LINE L2 2393 2562 -752 2789 19 0 3 chr3 170231788 170232105 -47805053 + AluYb8 SINE Alu 1 316 -2 241 323 152 44 chr3 170232105 170232229 -47804929 + L2 LINE L2 2562 2742 -572 447 237 56 31 chr3 170232494 170232718 -47804440 - L1ME3 LINE L1 -323 5847 5607 318 239 34 0 chr3 170232861 170232949 -47804209 - LTR37A LTR ERV1 -226 200 110 274 226 81 81 chr3 170233087 170233211 -47803947 + MER58C DNA MER1_type 1 124 -91 282 233 0 47 chr3 170233569 170233655 -47803503 - MER58C DNA MER1_type -19 196 115 338 322 35 62 chr3 170233769 170233960 -47803198 - L1MEd LINE L1 -1809 5039 4853 180 0 0 0 chr3 170233960 170233980 -47803178 + (TC)n Simple_repeat Simple_repeat 2 21 0 338 322 35 62 chr3 170233980 170234015 -47803143 - L1MEd LINE L1 -1995 4853 4819 358 289 66 61 chr3 170234099 170234339 -47802819 - L1MEd LINE L1 -3033 3815 3578 2096 147 0 10 chr3 170234339 170234653 -47802505 - AluSx SINE Alu -1 311 1 358 289 66 61 chr3 170234653 170235035 -47802123 - L1MEd LINE L1 -3270 3578 3190 392 266 23 23 chr3 170235162 170235380 -47801778 - L1MEd LINE L1 -3819 3029 2812 735 146 32 8 chr3 170235622 170235745 -47801413 - FLAM_A SINE Alu -5 128 3 3827 142 11 9 chr3 170236448 170237082 -47800076 - MER41B LTR ERV1 0 635 1 249 273 0 0 chr3 170237083 170237149 -47800009 - L1MEd LINE L1 -5956 882 817 606 114 29 19 chr3 170237554 170237659 -47799499 + FLAM_A SINE Alu 24 129 -13 1518 161 70 7 chr3 170237861 170237983 -47799175 + AluSx SINE Alu 2 115 -197 312 27 0 0 chr3 170237983 170238020 -47799138 + (CA)n Simple_repeat Simple_repeat 2 38 0 1518 161 70 7 chr3 170238020 170238170 -47798988 + AluSx SINE Alu 115 291 -21 372 77 0 0 chr3 170238583 170238635 -47798523 + (TG)n Simple_repeat Simple_repeat 2 53 0 401 297 6 44 chr3 170239066 170239248 -47797910 + GA-rich Low_complexity Low_complexity 3 177 0 374 323 108 83 chr3 170239543 170240262 -47796896 - L1M4 LINE L1 -5701 1148 412 285 262 0 0 chr3 170243190 170243251 -47793907 + MIR SINE MIR 72 132 -130 212 98 0 24 chr3 170243887 170243928 -47793230 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 26 64 0 0 chr3 170244840 170244887 -47792271 + AT_rich Low_complexity Low_complexity 1 47 0 198 158 0 26 chr3 170245036 170245074 -47792084 - L2 LINE L2 -1095 2219 2183 181 333 20 40 chr3 170245273 170245372 -47791786 - L2 LINE L2 -48 3265 3169 2318 100 3 0 chr3 170245503 170245814 -47791344 - AluSx SINE Alu 0 312 1 1670 138 3 99 chr3 170246788 170247122 -47790036 - AluJo SINE Alu 0 302 1 213 154 0 0 chr3 170248181 170248220 -47788938 + (CA)n Simple_repeat Simple_repeat 2 40 0 2503 84 3 0 chr3 170248389 170248700 -47788458 + AluSp SINE Alu 1 312 -1 1058 189 14 27 chr3 170249362 170249584 -47787574 - MER20 DNA MER1_type 0 219 1 455 179 13 0 chr3 170249626 170249704 -47787454 + MLT1D LTR MaLR 4 82 -423 1737 126 69 0 chr3 170249704 170249966 -47787192 + AluSx SINE Alu 18 297 -15 1399 162 49 18 chr3 170250323 170250772 -47786386 - MER44D DNA MER2_type 0 605 1 1573 176 20 72 chr3 170251935 170252315 -47784843 - MLT2B3 LTR ERVL -2 395 1 1940 205 35 76 chr3 170252315 170253073 -47784085 + L1ME1 LINE L1 5463 6175 -9 2154 114 0 19 chr3 170253599 170253915 -47783243 + AluSg SINE Alu 1 310 0 231 342 55 9 chr3 170254253 170254387 -47782771 + MIR3 SINE MIR 34 171 -54 488 224 192 0 chr3 170254926 170255082 -47782076 + MER5A DNA MER1_type 4 189 0 235 250 0 0 chr3 170255088 170255140 -47782018 + MER5B DNA MER1_type 2 53 -125 229 200 0 50 chr3 170255527 170255579 -47781579 + (TTCA)n Simple_repeat Simple_repeat 3 53 -6 740 197 0 8 chr3 170255579 170255711 -47781447 - FLAM_A SINE Alu -2 131 1 229 200 0 50 chr3 170255711 170255718 -47781440 + (TTCA)n Simple_repeat Simple_repeat 53 59 0 198 309 107 65 chr3 170256036 170256204 -47780954 - L2 LINE L2 -355 2959 2785 202 299 133 87 chr3 170256339 170256731 -47780427 - L2 LINE L2 -337 2977 2568 1280 138 0 30 chr3 170256748 170256973 -47780185 - AluJb SINE Alu 0 305 87 609 298 149 54 chr3 170256974 170257545 -47779613 - L2 LINE L2 -757 2557 1933 256 295 63 82 chr3 170258011 170258218 -47778940 - L2 LINE L2 -40 3232 3030 2241 88 0 10 chr3 170258325 170258619 -47778539 + AluSc SINE Alu 1 291 -18 2418 24 3 0 chr3 170259715 170260011 -47777147 - L1PA5 LINE L1 -260 5894 5598 * 2689 47 0 4 chr3 170260007 170260565 -47776593 + L1PA5 LINE L1 5042 5597 -557 753 186 8 0 chr3 170260796 170260925 -47776233 + FLAM_A SINE Alu 1 130 -3 2231 164 65 2 chr3 170260958 170261361 -47775797 + MSTA LTR MaLR 1 428 0 24 32 0 0 chr3 170262117 170262148 -47775010 + AT_rich Low_complexity Low_complexity 1 31 0 189 262 24 0 chr3 170262344 170262386 -47774772 - L2 LINE L2 -26 3246 3204 286 237 263 32 chr3 170263137 170263323 -47773835 + L2 LINE L2 3081 3309 -4 395 212 71 35 chr3 170264196 170264309 -47772849 + L2 LINE L2 3155 3271 -1 23 40 0 0 chr3 170265081 170265106 -47772052 + AT_rich Low_complexity Low_complexity 1 25 0 430 288 80 25 chr3 170265673 170265836 -47771322 + MIR SINE MIR 2 173 -89 2354 84 3 7 chr3 170267168 170267467 -47769691 + AluSg SINE Alu 1 298 -12 2623 209 67 13 chr3 170267706 170268319 -47768839 - MER82 DNA MER2_type 0 653 8 2136 91 0 23 chr3 170268416 170268724 -47768434 + AluSq SINE Alu 1 301 -12 567 247 59 24 chr3 170269755 170269925 -47767233 - MER5B DNA MER1_type -2 176 1 316 298 11 43 chr3 170270358 170270452 -47766706 + MIR SINE MIR 20 110 -152 202 343 0 27 chr3 170270438 170270511 -47766647 - MIR SINE MIR -161 101 31 * 384 258 39 0 chr3 170270814 170270969 -47766189 - L1ME4a LINE L1 0 6121 5961 202 330 144 31 chr3 170272251 170272348 -47764810 - L2 LINE L2 -46 3226 3119 191 335 107 34 chr3 170272629 170272862 -47764296 - L2 LINE L2 -527 2787 2538 293 365 66 25 chr3 170273098 170273342 -47763816 - L2 LINE L2 -159 3113 2860 1527 134 119 15 chr3 170273419 170273687 -47763471 - AluSg SINE Alu -14 296 1 21 0 0 0 chr3 170274180 170274201 -47762957 + AT_rich Low_complexity Low_complexity 1 21 0 2163 117 11 0 chr3 170275561 170275876 -47761282 - AluSq SINE Alu 0 318 1 252 122 0 0 chr3 170277733 170277774 -47759384 + (T)n Simple_repeat Simple_repeat 1 41 0 37990 29 18 3 chr3 170279582 170285622 -47751536 - L1PA2 LINE L1 0 6155 1 2188 102 0 22 chr3 170285622 170285937 -47751221 - AluSg SINE Alu -2 308 1 770 245 61 99 chr3 170286660 170286901 -47750257 + MER102b DNA MER1_type 4 230 -1198 2265 86 3 29 chr3 170286901 170287214 -47749944 + AluSp SINE Alu 1 305 -8 770 245 61 99 chr3 170287214 170287315 -47749843 + MER102b DNA MER1_type 230 333 -8 628 274 82 65 chr3 170287349 170287751 -47749407 - MLT1J LTR MaLR -37 474 66 272 298 94 50 chr3 170288167 170288348 -47748810 - MER117 DNA MER1_type -6 191 3 187 272 37 37 chr3 170288731 170288812 -47748346 + L2 LINE L2 2918 2998 -274 580 277 68 43 chr3 170291056 170291291 -47745867 - L2 LINE L2 -5 3308 3068 255 342 132 13 chr3 170291313 170291465 -47745693 - L2 LINE L2 -623 2691 2522 1928 107 55 7 chr3 170292971 170293261 -47743897 + AluSq SINE Alu 2 305 -8 186 43 0 0 chr3 170293261 170293284 -47743874 + (TA)n Simple_repeat Simple_repeat 2 24 0 327 242 0 67 chr3 170293804 170293924 -47743234 + L1MC4 LINE L1 6614 6725 -1317 6180 194 7 6 chr3 170294227 170296525 -47740633 - L1PA16 LINE L1 -9 6157 3859 2056 145 0 3 chr3 170297514 170297825 -47739333 + AluSg SINE Alu 1 310 0 289 67 0 0 chr3 170299106 170299151 -47738007 + Alu SINE Alu 257 301 0 1928 149 37 0 chr3 170300947 170301242 -47735916 - AluSx SINE Alu -6 306 1 39 0 0 0 chr3 170302210 170302249 -47734909 + AT_rich Low_complexity Low_complexity 1 39 0 203 265 73 15 chr3 170306073 170306141 -47731017 + L2 LINE L2 3242 3313 0 258 203 16 16 chr3 170306218 170306282 -47730876 - MER103 DNA DNA -89 77 14 28 0 0 0 chr3 170306580 170306608 -47730550 + AT_rich Low_complexity Low_complexity 1 28 0 219 205 48 12 chr3 170306651 170306734 -47730424 + A-rich Low_complexity Low_complexity 3 88 0 2069 147 0 0 chr3 170306780 170307079 -47730079 + AluJb SINE Alu 1 299 -13 634 225 55 118 chr3 170308473 170308744 -47728414 + MIR SINE MIR 8 261 -1 180 158 0 0 chr3 170309980 170310018 -47727140 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 397 252 26 84 chr3 170311046 170311201 -47725957 + MER5B DNA MER1_type 1 146 -32 427 111 0 0 chr3 170311506 170311569 -47725589 + AluJ/FRAM SINE Alu 230 292 -20 192 363 67 34 chr3 170311900 170312079 -47725079 + L2 LINE L2 2144 2328 -986 195 346 80 48 chr3 170312322 170312510 -47724648 + L2 LINE L2 2556 2749 -565 2167 128 0 0 chr3 170313043 170313341 -47723817 + AluSx SINE Alu 1 298 -14 817 88 88 0 chr3 170313523 170313637 -47723521 - AluSg/x SINE Alu -14 296 173 280 269 76 50 chr3 170314038 170314157 -47723001 - L2 LINE L2 -10 3262 3141 288 260 142 55 chr3 170314644 170314771 -47722387 + MIR3 SINE MIR 59 196 -12 219 69 0 0 chr3 170315397 170315426 -47721732 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 353 268 18 36 chr3 170315779 170315891 -47721267 - L2 LINE L2 -27 3286 3177 27 0 0 0 chr3 170319008 170319035 -47718123 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr3 170320708 170320729 -47716429 + AT_rich Low_complexity Low_complexity 1 21 0 2393 106 3 0 chr3 170322977 170323288 -47713870 + AluSq SINE Alu 1 312 -1 1807 175 3 7 chr3 170324113 170324410 -47712748 + AluJb SINE Alu 7 302 -10 24 0 0 0 chr3 170325473 170325497 -47711661 + AT_rich Low_complexity Low_complexity 1 24 0 202 341 123 52 chr3 170325675 170326211 -47710947 - L2 LINE L2 -436 2878 2305 253 143 54 18 chr3 170326337 170326393 -47710765 - L2 LINE L2 0 3272 3215 288 106 128 0 chr3 170327029 170327076 -47710082 + FRAM/FAM SINE Alu 7 59 -107 477 308 70 22 chr3 170327983 170328168 -47708990 - MIR SINE MIR -64 198 5 289 247 39 0 chr3 170329635 170329712 -47707446 - L2 LINE L2 0 3313 3234 254 358 53 53 chr3 170329781 170330175 -47706983 - L2 LINE L2 -2771 543 150 2389 235 104 31 chr3 170330238 170330302 -47706856 - L1MEc LINE L1 -5556 840 782 2100 132 3 0 chr3 170330302 170330591 -47706567 - AluSx SINE Alu -22 290 1 2389 235 104 31 chr3 170330591 170331274 -47705884 - L1MEc LINE L1 -5614 782 38 248 139 23 23 chr3 170331290 170331333 -47705825 - MER5B DNA MER1_type -135 43 1 202 294 202 18 chr3 170331479 170331588 -47705570 + L2 LINE L2 3134 3262 -10 210 324 113 64 chr3 170331665 170331869 -47705289 - L3b LINE CR1 -92 1491 1278 236 255 0 0 chr3 170332090 170332141 -47705017 - L2 LINE L2 0 3272 3222 193 330 71 27 chr3 170333171 170333283 -47703875 + L3 LINE CR1 1296 1412 -165 288 77 0 0 chr3 170333809 170333848 -47703310 + (CAT)n Simple_repeat Simple_repeat 2 40 0 407 240 190 13 chr3 170334068 170334237 -47702921 + MIR SINE MIR 19 213 -49 495 0 0 0 chr3 170334572 170334627 -47702531 + (TG)n Simple_repeat Simple_repeat 1 55 0 24 32 0 0 chr3 170334775 170334806 -47702352 + AT_rich Low_complexity Low_complexity 1 31 0 27 73 0 0 chr3 170335745 170335800 -47701358 + AT_rich Low_complexity Low_complexity 1 55 0 1977 155 0 3 chr3 170336789 170337080 -47700078 + AluJb SINE Alu 1 290 -22 21 0 0 0 chr3 170337461 170337482 -47699676 + AT_rich Low_complexity Low_complexity 1 21 0 635 191 15 8 chr3 170337789 170337920 -47699238 - MLT1A2 LTR MaLR -53 321 190 281 271 0 0 chr3 170338795 170338854 -47698304 - L2 LINE L2 -36 3236 3178 1627 153 53 9 chr3 170338860 170339180 -47697978 + MER2 DNA MER2_type 4 337 -8 520 295 123 33 chr3 170339188 170339688 -47697470 - L2 LINE L2 -98 3215 2656 204 260 130 0 chr3 170340341 170340418 -47696740 - MIR SINE MIR -168 94 8 38 22 0 0 chr3 170341425 170341470 -47695688 + AT_rich Low_complexity Low_complexity 1 45 0 1443 230 60 7 chr3 170342188 170342618 -47694540 - L1ME3A LINE L1 -20 6150 5698 310 303 50 8 chr3 170343437 170343556 -47693602 + MIR3 SINE MIR 37 160 -48 1951 160 6 13 chr3 170344935 170345247 -47691911 + AluJo SINE Alu 1 310 -2 374 229 64 21 chr3 170345346 170345486 -47691672 + L1ME4a LINE L1 5961 6106 -15 354 329 40 86 chr3 170346781 170346879 -47690279 - MIR SINE MIR -26 236 135 2119 107 55 0 chr3 170346879 170347170 -47689988 - AluSg SINE Alu -3 307 1 354 329 40 86 chr3 170347170 170347293 -47689865 - MIR SINE MIR -127 135 25 2300 102 0 0 chr3 170347358 170347653 -47689505 + AluY SINE Alu 1 295 -16 198 274 0 16 chr3 170348825 170348887 -47688271 + MIR SINE MIR 118 178 -84 2069 118 26 3 chr3 170349241 170349546 -47687612 - AluSx SINE Alu 0 312 1 1588 205 37 57 chr3 170349734 170350242 -47686916 + MLT1D LTR MaLR 1 498 -7 329 250 40 30 chr3 170351104 170351204 -47685954 - MER63 DNA MER1_type -6 1056 730 416 292 0 0 chr3 170351432 170351521 -47685637 + MER91B DNA MER1_type 99 187 -3 1845 194 25 6 chr3 170351542 170351898 -47685260 + MLT1A1 LTR MaLR 1 363 -2 210 377 29 0 chr3 170352323 170352392 -47684766 + L2 LINE L2 3165 3235 -37 466 256 90 8 chr3 170354124 170354257 -47682901 + MLT1J LTR MaLR 7 150 -361 350 238 166 26 chr3 170354356 170354507 -47682651 + MLT1J LTR MaLR 305 476 -35 243 322 68 20 chr3 170354923 170355069 -47682089 - MLT1J2 LTR MaLR -14 436 284 1847 150 18 0 chr3 170355070 170355356 -47681802 - AluJb SINE Alu -17 295 5 230 254 75 0 chr3 170355961 170356028 -47681130 + MIR SINE MIR 65 136 -72 21 36 0 0 chr3 170358055 170358083 -47679075 + AT_rich Low_complexity Low_complexity 1 28 0 429 271 166 0 chr3 170358097 170358248 -47678910 + MIR3 SINE MIR 16 191 -17 202 305 17 0 chr3 170358801 170358860 -47678298 + L2 LINE L2 3248 3307 -6 220 305 127 46 chr3 170359270 170359449 -47677709 - MIR SINE MIR -18 244 41 1909 130 139 56 chr3 170359686 170359850 -47677308 + MLT1C LTR MaLR 1 150 -317 2271 93 0 3 chr3 170359850 170360141 -47677017 + AluSg SINE Alu 1 290 -20 1909 130 139 56 chr3 170360141 170360407 -47676751 + MLT1C LTR MaLR 150 467 0 412 280 75 0 chr3 170361257 170361364 -47675794 - L2 LINE L2 -1 3312 3198 2346 86 13 0 chr3 170363492 170363794 -47673364 - AluY SINE Alu -5 306 1 551 242 51 45 chr3 170363800 170363978 -47673180 - MER110 LTR ERV1 -141 350 172 2151 127 0 10 chr3 170364415 170364722 -47672436 - AluSq SINE Alu -9 304 1 444 301 42 21 chr3 170364797 170364990 -47672168 + L2 LINE L2 1223 1419 -1895 771 186 8 0 chr3 170365039 170365168 -47671990 + FLAM_C SINE Alu 2 131 -12 342 344 127 34 chr3 170365351 170365944 -47671214 + L2 LINE L2 2035 2682 -632 280 43 21 21 chr3 170366074 170366121 -47671037 + (TA)n Simple_repeat Simple_repeat 2 48 0 574 246 133 38 chr3 170366528 170366821 -47670337 - HAL1 LINE L1 0 2507 2187 743 315 32 3 chr3 170366834 170367148 -47670010 - HAL1 LINE L1 -390 2117 1795 396 301 120 0 chr3 170367204 170367337 -47669821 + MER5B DNA MER1_type 29 177 -1 1409 255 44 33 chr3 170367349 170367809 -47669349 - HAL1 LINE L1 -766 1741 1272 243 0 0 0 chr3 170367809 170367836 -47669322 + (TTC)n Simple_repeat Simple_repeat 2 28 0 1409 255 44 33 chr3 170367836 170367948 -47669210 - HAL1 LINE L1 -1235 1272 1163 832 217 6 28 chr3 170367948 170368074 -47669084 - AluJb SINE Alu -1 311 189 3157 94 18 2 chr3 170368074 170368532 -47668626 - MER4C LTR ERV1 0 465 1 832 217 6 28 chr3 170368532 170368585 -47668573 - AluJb SINE Alu -123 189 136 1820 141 42 25 chr3 170368656 170369011 -47668147 + MLT1B LTR MaLR 30 390 0 896 249 32 55 chr3 170369012 170369413 -47667745 - HAL1 LINE L1 -1358 1149 758 848 160 0 0 chr3 170369607 170369738 -47667420 - FLAM_C SINE Alu -7 136 6 7857 12 0 0 chr3 170369787 170370774 -47666384 - L1PA2 LINE L1 0 6155 5168 601 258 50 16 chr3 170371846 170372028 -47665130 + MIR SINE MIR 11 198 -64 2377 91 0 0 chr3 170372955 170373253 -47663905 + AluSg SINE Alu 1 298 -12 221 95 0 24 chr3 170373473 170373515 -47663643 + (TAA)n Simple_repeat Simple_repeat 3 43 0 577 169 51 8 chr3 170374021 170374139 -47663019 - MIR SINE MIR -55 207 85 380 261 272 2 chr3 170374338 170374604 -47662554 + Charlie8 DNA MER1_type 1 1414 -1003 2284 112 14 0 chr3 170374961 170375256 -47661902 + AluSx SINE Alu 1 299 -13 233 269 0 0 chr3 170375348 170375400 -47661758 + L2 LINE L2 3221 3272 0 2999 49 0 0 chr3 170376120 170376490 -47660668 - L1PA8 LINE L1 -10 6162 5793 1422 168 0 0 chr3 170376800 170377020 -47660138 + AluJo SINE Alu 1 220 -92 717 236 28 0 chr3 170377053 170377197 -47659961 + FRAM SINE Alu 3 150 -16 21 36 0 0 chr3 170377197 170377225 -47659933 + AT_rich Low_complexity Low_complexity 1 28 0 540 101 0 0 chr3 170378649 170378728 -47658430 - L1PA11 LINE L1 0 6174 6096 705 281 105 13 chr3 170378774 170379080 -47658078 - L1MC4a LINE L1 -1871 5937 5604 3678 107 11 0 chr3 170379080 170379621 -47657537 - MER41A LTR ERV1 -7 547 1 553 251 178 0 chr3 170379623 170379814 -47657344 - L1MC4a LINE L1 -2208 5600 5376 * 16609 160 27 44 chr3 170379802 170380903 -47656255 - L1PA10 LINE L1 -1 6482 5364 406 19 19 0 chr3 170380903 170380956 -47656202 - THE1C LTR MaLR -321 54 1 16609 160 27 44 chr3 170380956 170386286 -47650872 - L1PA10 LINE L1 -1119 5364 10 496 317 117 52 chr3 170386299 170386776 -47650382 - L1MC4a LINE L1 -749 5397 4890 225 339 89 40 chr3 170387160 170387284 -47649874 - MER5A DNA MER1_type -59 130 1 340 302 52 0 chr3 170387477 170387573 -47649585 - MLT1H LTR MaLR -48 547 447 617 230 22 66 chr3 170387613 170387839 -47649319 - MLT1H LTR MaLR -242 307 92 637 289 43 49 chr3 170388398 170388747 -47648411 - MLT1K LTR MaLR -32 556 210 2194 204 35 17 chr3 170388755 170389235 -47647923 + MLT1D LTR MaLR 1 489 -16 23 0 0 0 chr3 170389898 170389921 -47647237 + AT_rich Low_complexity Low_complexity 1 23 0 835 244 81 65 chr3 170390260 170390305 -47646853 + MLT1G3 LTR MaLR 1 44 -498 1543 83 9 0 chr3 170390305 170390535 -47646623 + L1MA5A LINE L1 6063 6294 -3 835 244 81 65 chr3 170390535 170391015 -47646143 + MLT1G3 LTR MaLR 44 542 0 231 114 0 0 chr3 170391457 170391492 -47645666 + (TA)n Simple_repeat Simple_repeat 1 35 0 247 152 0 0 chr3 170391494 170391540 -47645618 - L1MC4 LINE L1 -1339 6703 6658 183 156 0 0 chr3 170391540 170391572 -47645586 + (CATA)n Simple_repeat Simple_repeat 4 35 0 1136 61 0 0 chr3 170391845 170391992 -47645166 + L1PA6 LINE L1 6008 6154 0 374 289 39 102 chr3 170392044 170392408 -47644750 + MER102b DNA MER1_type 1 341 0 15696 204 38 18 chr3 170394303 170400941 -47636217 - L1PA15 LINE L1 -2 6814 1 246 187 355 9 chr3 170400946 170401053 -47636105 - MLT1E1 LTR MaLR -72 582 439 266 167 17 0 chr3 170401226 170401286 -47635872 + CT-rich Low_complexity Low_complexity 3 63 0 201 178 0 0 chr3 170401563 170401608 -47635550 + (TG)n Simple_repeat Simple_repeat 1 45 0 * 282 164 0 0 chr3 170401607 170401662 -47635496 + GA-rich Low_complexity Low_complexity 1 55 0 425 281 29 47 chr3 170403985 170404156 -47633002 - MIR3 SINE MIR -21 187 20 252 59 0 0 chr3 170404204 170404238 -47632920 + (CA)n Simple_repeat Simple_repeat 2 35 0 655 189 0 0 chr3 170404267 170404394 -47632764 - MER103 DNA DNA -38 128 2 303 93 0 0 chr3 170405250 170405293 -47631865 + (TC)n Simple_repeat Simple_repeat 2 44 0 504 32 0 0 chr3 170405293 170405355 -47631803 + (CA)n Simple_repeat Simple_repeat 1 62 0 2357 205 19 85 chr3 170405382 170405925 -47631233 + MLT2B3 LTR ERVL 3 505 -49 317 24 24 0 chr3 170405925 170405967 -47631191 + (TG)n Simple_repeat Simple_repeat 2 44 0 2357 205 19 85 chr3 170405967 170406014 -47631144 + MLT2B3 LTR ERVL 505 554 0 730 249 90 33 chr3 170406017 170406262 -47630896 + ERVL-B3-B2 LTR ERVL 4 262 -5502 27092 160 55 16 chr3 170406291 170407663 -47629495 + ERVL-B3-B2 LTR ERVL 495 1813 -3951 14538 143 55 13 chr3 170407663 170409428 -47627730 - Tigger2 DNA MER2_type -1 2717 1028 2276 101 3 0 chr3 170409428 170409725 -47627433 - AluSp SINE Alu -15 298 1 14538 143 55 13 chr3 170409725 170410407 -47626751 - Tigger2 DNA MER2_type -1690 1028 151 2088 132 3 7 chr3 170410407 170410710 -47626448 - AluSx SINE Alu -8 304 3 14538 143 55 13 chr3 170410710 170410868 -47626290 - Tigger2 DNA MER2_type -2567 151 1 27092 160 55 16 chr3 170410868 170414563 -47622595 + ERVL-B3-B2 LTR ERVL 1813 5757 -7 2413 183 30 67 chr3 170414563 170415098 -47622060 + MLT2B2 LTR ERVL 1 515 0 2249 125 0 3 chr3 170416165 170416468 -47620690 - AluSg SINE Alu -8 302 1 905 298 24 17 chr3 170416499 170416791 -47620367 + L2 LINE L2 2063 2356 -958 644 269 124 35 chr3 170416865 170417148 -47620010 + L2 LINE L2 2236 2543 -771 317 140 37 37 chr3 170417173 170417280 -47619878 + (TATAA)n Simple_repeat Simple_repeat 3 109 0 2206 193 59 43 chr3 170417282 170417343 -47619815 + L1MC4 LINE L1 6614 6673 -1322 2349 160 60 52 chr3 170417343 170417843 -47619315 + MLT1D LTR MaLR 2 505 0 2206 193 59 43 chr3 170417843 170418463 -47618695 + L1MC4 LINE L1 6673 7281 -714 695 184 0 0 chr3 170418463 170418588 -47618570 + MLT1F1 LTR MaLR 1 125 -442 2206 193 59 43 chr3 170418588 170419144 -47618014 + L1MC4 LINE L1 7281 7971 -24 1412 201 23 26 chr3 170419149 170419457 -47617701 + AluJo SINE Alu 5 311 -1 1245 294 74 40 chr3 170419499 170420255 -47616903 + L2 LINE L2 2528 3305 -8 24 0 0 0 chr3 170420658 170420682 -47616476 + AT_rich Low_complexity Low_complexity 1 24 0 334 253 0 21 chr3 170420696 170420791 -47616367 + Charlie8 DNA MER1_type 104 196 -2221 255 179 0 0 chr3 170422191 170422229 -47614929 - MLT2B3 LTR ERVL 0 554 517 363 44 0 0 chr3 170422229 170422274 -47614884 + (TGGA)n Simple_repeat Simple_repeat 2 46 0 255 179 0 0 chr3 170422274 170422298 -47614860 - MLT2B3 LTR ERVL -36 518 458 2372 205 49 2 chr3 170422331 170422823 -47614335 - MLT2B3 LTR ERVL -39 515 1 980 171 57 0 chr3 170422823 170422998 -47614160 - MER5A DNA MER1_type 0 189 5 2083 120 121 9 chr3 170423125 170423507 -47613651 + MSTA LTR MaLR 7 428 0 207 0 0 0 chr3 170424348 170424371 -47612787 + (CACAC)n Simple_repeat Simple_repeat 1 23 0 641 263 39 52 chr3 170425071 170425303 -47611855 + MIR SINE MIR 3 231 -31 266 216 0 0 chr3 170426247 170426298 -47610860 - MIR SINE MIR -11 251 201 5407 117 32 11 chr3 170426564 170427530 -47609628 + L1PB3 LINE L1 5173 6154 0 1806 142 63 41 chr3 170429840 170430207 -47606951 + THE1C LTR MaLR 1 375 0 201 354 79 37 chr3 170430413 170430577 -47606581 - MER5A DNA MER1_type -2 187 17 188 316 66 0 chr3 170430610 170430686 -47606472 - MIR SINE MIR -63 145 65 1133 152 5 0 chr3 170430845 170431043 -47606115 + L1PBa LINE L1 2 200 -6663 12037 136 82 21 chr3 170431045 170433272 -47603886 + L1PBa LINE L1 636 3132 -3730 2059 125 30 0 chr3 170433272 170433568 -47603590 + AluSq SINE Alu 1 305 -8 12037 136 82 21 chr3 170433568 170434691 -47602467 + L1PBa LINE L1 3132 4185 -2677 2653 77 126 20 chr3 170434693 170435098 -47602060 - LTR7 LTR ERV1 -2 448 1 2403 88 48 13 chr3 170435098 170435475 -47601683 - HERVH LTR ERV1 0 7713 7324 1417 136 0 0 chr3 170435475 170435695 -47601463 - HERVH LTR ERV1 -1894 5819 5600 8277 101 2 7 chr3 170435696 170437719 -47599439 - HERVH LTR ERV1 -1818 5273 3198 24 96 0 0 chr3 170439266 170439339 -47597819 + AT_rich Low_complexity Low_complexity 1 73 0 1131 273 74 22 chr3 170439398 170439801 -47597357 + MLT1J2 LTR MaLR 2 425 -25 1079 185 33 0 chr3 170439818 170440029 -47597129 - MER20 DNA MER1_type 0 219 2 965 308 57 27 chr3 170440080 170440414 -47596744 - Tigger8 DNA MER2_type -4 662 304 1991 62 114 0 chr3 170440414 170440686 -47596472 - AluY SINE Alu -8 303 1 965 308 57 27 chr3 170440686 170440900 -47596258 - Tigger8 DNA MER2_type -362 304 98 198 343 46 56 chr3 170441178 170441286 -47595872 - L2 LINE L2 -53 3219 3113 33 25 0 0 chr3 170441509 170441549 -47595609 + AT_rich Low_complexity Low_complexity 1 40 0 1366 177 74 32 chr3 170442649 170442932 -47594226 - AluJb SINE Alu -11 301 7 2275 108 0 3 chr3 170442971 170443278 -47593880 - AluSq SINE Alu -6 307 2 339 295 56 32 chr3 170443281 170443657 -47593501 + L1M4 LINE L1 2854 3238 -2908 * 3183 76 40 45 chr3 170443640 170444197 -47592961 + L1PB1 LINE L1 5195 5752 -399 232 143 29 29 chr3 170444197 170444267 -47592891 - LTR66 LTR ERVL -146 464 395 386 195 11 0 chr3 170444267 170444354 -47592804 + (TA)n Simple_repeat Simple_repeat 1 88 0 225 119 0 0 chr3 170444355 170444397 -47592761 - LTR66 LTR ERVL -171 439 398 333 235 0 0 chr3 170444397 170444482 -47592676 + (TA)n Simple_repeat Simple_repeat 2 86 0 2315 93 70 0 chr3 170444484 170444827 -47592331 + L1PB1 LINE L1 5783 6149 -2 310 313 49 54 chr3 170445110 170445576 -47591582 + L1M4 LINE L1 4128 4591 -1555 207 244 0 0 chr3 170445600 170445641 -47591517 + CT-rich Low_complexity Low_complexity 2 42 0 1364 141 14 70 chr3 170445791 170446075 -47591083 - AluSx SINE Alu -44 268 1 2264 67 0 3 chr3 170446225 170446525 -47590633 - L1PA7 LINE L1 0 6154 5856 315 202 20 30 chr3 170446526 170446625 -47590533 + L1ME2 LINE L1 6044 6141 -23 209 229 12 24 chr3 170447275 170447358 -47589800 + (TTTG)n Simple_repeat Simple_repeat 3 84 0 488 239 92 0 chr3 170448340 170448470 -47588688 - MIR SINE MIR -19 243 102 1091 240 56 61 chr3 170448472 170448934 -47588224 - LTR37B LTR ERV1 0 468 9 225 290 75 11 chr3 170448940 170449033 -47588125 - MIR SINE MIR -158 104 6 222 253 95 84 chr3 170449682 170449777 -47587381 + MIR3 SINE MIR 87 182 -26 1375 181 34 42 chr3 170450043 170450390 -47586768 - MER45R DNA AcHobo 0 1581 1236 1050 70 116 35 chr3 170450390 170450562 -47586596 - L1PA11 LINE L1 0 6174 5989 1375 181 34 42 chr3 170450562 170450600 -47586558 - MER45R DNA AcHobo -345 1236 1199 285 315 221 0 chr3 170450799 170451012 -47586146 - MIR SINE MIR -1 261 2 1377 178 126 7 chr3 170451095 170451364 -47585794 - AluJb SINE Alu -1 301 1 1301 163 119 31 chr3 170451448 170451806 -47585352 + MSTA LTR MaLR 1 428 0 6108 235 77 33 chr3 170452020 170452350 -47584808 - L1M4c LINE L1 -3432 3212 2898 2249 100 0 23 chr3 170452350 170452651 -47584507 + AluY SINE Alu 1 294 -17 6108 235 77 33 chr3 170452651 170453657 -47583501 - L1M4c LINE L1 -3746 2898 1937 582 15 0 0 chr3 170453657 170453724 -47583434 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 1872 165 4 0 chr3 170453726 170454005 -47583153 - AluSx SINE Alu -32 280 1 6108 235 77 33 chr3 170454005 170455644 -47581514 - L1M4c LINE L1 -4707 1937 2 31 26 0 0 chr3 170456215 170456253 -47580905 + AT_rich Low_complexity Low_complexity 1 38 0 380 250 145 20 chr3 170457589 170457741 -47579417 - MIR SINE MIR -71 191 21 370 285 81 0 chr3 170458432 170458555 -47578603 + MIR3 SINE MIR 24 156 -52 28 61 0 0 chr3 170458608 170458657 -47578501 + AT_rich Low_complexity Low_complexity 1 49 0 550 332 40 22 chr3 170458677 170458900 -47578258 - MIR SINE MIR -18 244 18 322 231 116 98 chr3 170460383 170460570 -47576588 - MIR SINE MIR -54 208 21 638 158 108 0 chr3 170461230 170461350 -47575808 + FLAM_C SINE Alu 1 133 0 2068 246 52 23 chr3 170461350 170462000 -47575158 + L1MC4a LINE L1 5296 5964 -1844 297 268 172 19 chr3 170462034 170462243 -47574915 + L1MC4a LINE L1 6089 6329 -1479 234 302 38 0 chr3 170462351 170462457 -47574701 + L1MC4a LINE L1 6548 6657 -1151 426 200 99 121 chr3 170462573 170462851 -47574307 + L1MC5 LINE L1 7226 7331 -477 2312 98 3 0 chr3 170462851 170463148 -47574010 + AluSc SINE Alu 1 298 -11 426 200 99 121 chr3 170463148 170463224 -47573934 + L1MC5 LINE L1 7331 7407 -401 1830 175 81 28 chr3 170463297 170463731 -47573427 + MSTB2 LTR MaLR 1 457 0 307 322 63 21 chr3 170463900 170464043 -47573115 + L1MC5 LINE L1 7768 7916 -45 396 204 106 45 chr3 170464117 170464249 -47572909 - MER5A DNA MER1_type -49 140 1 908 216 22 5 chr3 170464258 170464443 -47572715 - MER5A DNA MER1_type -1 188 1 688 246 46 10 chr3 170464748 170464943 -47572215 - MER63A DNA MER1_type -8 202 1 758 149 71 0 chr3 170465365 170465519 -47571639 - L1MA8 LINE L1 -2 6289 6125 817 209 0 7 chr3 170465530 170465678 -47571480 + FAM SINE Alu 12 158 -27 183 42 0 0 chr3 170465680 170465704 -47571454 + (CAA)n Simple_repeat Simple_repeat 2 25 0 3202 144 15 15 chr3 170465704 170466240 -47570918 - L1MA8 LINE L1 -158 6133 5598 1876 150 0 0 chr3 170466549 170466823 -47570335 - AluSx SINE Alu -19 293 20 2216 272 5 8 chr3 170466826 170467458 -47569700 + HERVH LTR ERV1 3362 3991 -3722 1292 291 2 36 chr3 170467482 170467980 -47569178 + HERVH LTR ERV1 3945 4432 -2850 405 183 103 29 chr3 170468356 170468511 -47568647 + HERVH LTR ERV1 6543 7713 0 1427 186 51 92 chr3 170468511 170468980 -47568178 + LTR7 LTR ERV1 1 450 0 1204 178 4 25 chr3 170468987 170469262 -47567896 - L1 LINE L1 -1265 4881 4613 2004 124 33 7 chr3 170469269 170469576 -47567582 - MER51B LTR ERV1 0 377 63 529 82 68 285 chr3 170469568 170469775 -47567383 - MER51A LTR ERV1 -215 162 1 * 4940 186 37 44 chr3 170469776 170470726 -47566432 - L1 LINE L1 -1538 4608 3666 213 65 0 0 chr3 170470726 170470757 -47566401 + (TTG)n Simple_repeat Simple_repeat 2 32 0 4940 186 37 44 chr3 170470757 170470958 -47566200 - L1 LINE L1 -2480 3666 3465 2521 89 126 17 chr3 170470958 170471362 -47565796 + LTR7 LTR ERV1 1 448 -2 2628 128 7 2 chr3 170471364 170471769 -47565389 + HERVH LTR ERV1 1 407 -7306 29950 78 13 3 chr3 170571784 170576455 -47460703 + L1PA7 LINE L1 1267 5976 -178 245 295 213 30 chr3 170576583 170576912 -47460246 - L2 LINE L2 -1036 2278 1890 232 362 76 27 chr3 170577589 170577797 -47459361 - L2 LINE L2 -2478 836 640 2033 128 10 0 chr3 170577797 170578085 -47459073 + AluSx SINE Alu 1 291 -21 6153 17 1 0 chr3 170578085 170578744 -47458414 + L1PA2 LINE L1 5496 6155 0 232 362 76 27 chr3 170578744 170578758 -47458400 - L2 LINE L2 -2673 641 602 489 301 80 9 chr3 170578796 170579009 -47458149 + MIR SINE MIR 21 248 -14 692 214 23 0 chr3 170579009 170579140 -47458018 - MER94 DNA DNA 0 134 1 211 353 49 0 chr3 170579142 170579264 -47457894 - MIR3 SINE MIR -23 185 58 520 204 65 21 chr3 170579616 170579855 -47457303 + MLT1F LTR MaLR 207 529 -38 231 261 91 34 chr3 170580120 170580208 -47456950 + L2 LINE L2 3179 3271 -1 218 287 85 21 chr3 170580333 170580427 -47456731 - MIR3 SINE MIR -36 172 73 2218 135 0 0 chr3 170580716 170581028 -47456130 + AluSx SINE Alu 1 312 0 405 58 0 0 chr3 170581028 170581080 -47456078 + (GGAA)n Simple_repeat Simple_repeat 2 53 0 1098 94 11 11 chr3 170581080 170581260 -47455898 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 912 243 23 116 chr3 170582576 170583009 -47454149 + L2 LINE L2 2921 3313 0 371 237 21 65 chr3 170583640 170583826 -47453332 + G-rich Low_complexity Low_complexity 1 178 0 365 261 0 22 chr3 170583851 170584031 -47453127 + G-rich Low_complexity Low_complexity 1 176 0 1510 106 8 8 chr3 170584091 170584326 -47452832 + L1PA2 LINE L1 5921 6155 0 11899 168 32 4 chr3 170584329 170586948 -47450210 + L1MA1 LINE L1 2762 5456 -743 5067 98 18 21 chr3 170587413 170588212 -47448946 + L1MA1 LINE L1 5506 6301 -1 215 183 0 0 chr3 170588364 170588403 -47448755 + MIR SINE MIR 105 144 -64 549 210 0 0 chr3 170588542 170588661 -47448497 - L1MA4 LINE L1 -39 6261 6143 38 22 0 0 chr3 170590299 170590344 -47446814 + AT_rich Low_complexity Low_complexity 1 45 0 289 200 0 46 chr3 170590352 170590417 -47446741 + A-rich Low_complexity Low_complexity 1 62 0 187 137 20 20 chr3 170590425 170590476 -47446682 + (CCA)n Simple_repeat Simple_repeat 1 51 0 312 208 113 28 chr3 170594497 170594603 -47442555 - L1ME4a LINE L1 -17 6104 5990 2852 13 0 0 chr3 170597059 170597373 -47439785 - AluYb8 SINE Alu -4 314 1 393 195 203 8 chr3 170597721 170597839 -47439319 - MIR SINE MIR 0 262 122 2251 105 3 0 chr3 170598751 170599046 -47438112 - AluSx SINE Alu -16 296 1 334 247 59 68 chr3 170599988 170600135 -47437023 - MIR SINE MIR -65 143 32 866 205 142 68 chr3 170601642 170601803 -47435355 + L1ME3 LINE L1 5612 5760 -402 1909 178 3 0 chr3 170601803 170602112 -47435046 - AluJb SINE Alu -2 310 1 866 205 142 68 chr3 170602112 170602374 -47434784 + L1ME3 LINE L1 5760 6066 -96 22 0 0 0 chr3 170603863 170603885 -47433273 + AT_rich Low_complexity Low_complexity 1 22 0 2151 131 7 0 chr3 170603929 170604235 -47432923 - AluSx SINE Alu -4 308 1 2210 172 44 28 chr3 170608156 170608266 -47428892 + Tigger7 DNA MER2_type 1 108 -2379 2125 124 3 3 chr3 170608266 170608564 -47428594 - AluSx SINE Alu -14 298 1 2210 172 44 28 chr3 170608564 170608935 -47428223 + Tigger7 DNA MER2_type 108 2444 -43 714 170 0 7 chr3 170609704 170609856 -47427302 - L1M4 LINE L1 -697 5487 5337 21 0 0 0 chr3 170610658 170610679 -47426479 + AT_rich Low_complexity Low_complexity 1 21 0 246 281 281 25 chr3 170610808 170611004 -47426154 - MIR SINE MIR 0 262 17 285 250 28 0 chr3 170611109 170611181 -47425977 - MIR SINE MIR -6 256 183 23 0 0 0 chr3 170611590 170611613 -47425545 + AT_rich Low_complexity Low_complexity 1 23 0 2211 113 0 7 chr3 170612134 170612435 -47424723 + AluSq SINE Alu 1 299 -14 194 300 70 70 chr3 170612823 170612923 -47424235 + MIR SINE MIR 94 193 -69 236 296 9 9 chr3 170613388 170613503 -47423655 - L1ME LINE L1 -298 5823 5709 1970 261 82 13 chr3 170613698 170614161 -47422997 - L1ME3A LINE L1 0 6170 5740 2259 107 0 3 chr3 170614161 170614461 -47422697 - AluSq SINE Alu -14 299 1 1970 261 82 13 chr3 170614461 170614854 -47422304 - L1ME3A LINE L1 -430 5740 5255 398 235 167 5 chr3 170614933 170615137 -47422021 - L1ME3A LINE L1 -880 5266 5030 290 328 0 8 chr3 170615590 170615715 -47421443 - MARNA DNA Mariner -200 386 263 21 36 0 0 chr3 170615730 170615758 -47421400 + AT_rich Low_complexity Low_complexity 1 28 0 223 353 49 0 chr3 170616455 170616577 -47420581 + MIR3 SINE MIR 58 185 -23 634 214 23 0 chr3 170616579 170616710 -47420448 + MER94 DNA DNA 1 134 0 512 301 80 9 chr3 170616710 170616923 -47420235 - MIR SINE MIR -14 248 21 39520 32 22 1 chr3 170616975 170622840 -47414318 - L1PA2 LINE L1 0 6470 147 432 331 43 73 chr3 170622930 170623259 -47413899 - L2 LINE L2 -44 3228 2910 318 312 50 59 chr3 170623353 170623555 -47413603 - L2 LINE L2 -508 2806 2607 605 283 130 13 chr3 170625683 170625913 -47411245 - MIR SINE MIR 0 262 6 256 385 59 36 chr3 170627408 170627629 -47409529 - L2 LINE L2 -49 3223 2998 1986 151 3 3 chr3 170627648 170627952 -47409206 + AluJo SINE Alu 1 304 -8 1273 214 126 43 chr3 170627952 170628396 -47408762 - MLT1D LTR MaLR -7 498 18 508 245 0 0 chr3 170628571 170628677 -47408481 - Tigger7 DNA MER2_type 0 2491 2386 869 197 101 5 chr3 170628684 170628872 -47408286 - Tigger7 DNA MER2_type -523 210 5 521 263 75 0 chr3 170630195 170630355 -47406803 + MER5B DNA MER1_type 1 172 -6 21 0 0 0 chr3 170630400 170630421 -47406737 + AT_rich Low_complexity Low_complexity 1 21 0 1049 222 25 116 chr3 170631613 170632045 -47405113 + L2 LINE L2 2921 3313 0 24 0 0 0 chr3 170632879 170632903 -47404255 + AT_rich Low_complexity Low_complexity 1 24 0 2373 39 0 7 chr3 170633614 170633897 -47403261 - AluY SINE Alu -30 281 1 190 389 0 0 chr3 170634252 170634324 -47402834 + L3 LINE CR1 1491 1562 -15 188 265 0 41 chr3 170634277 170634326 -47402832 + MIR3 SINE MIR 143 189 -19 * 223 100 150 0 chr3 170634338 170634378 -47402780 - L2 LINE L2 0 3272 3227 2260 152 52 57 chr3 170634666 170635126 -47402032 + L1MB2 LINE L1 5712 6169 -2 1689 191 0 0 chr3 170635356 170635629 -47401529 + AluJb SINE Alu 1 273 -39 745 205 0 0 chr3 170635660 170635777 -47401381 + FLAM_C SINE Alu 2 118 -25 1583 172 156 16 chr3 170635847 170636167 -47400991 + MLT1A1 LTR MaLR 1 365 0 258 194 41 112 chr3 170636670 170636768 -47400390 - LTR67 LTR ERVL -54 503 413 462 276 13 17 chr3 170636782 170636961 -47400197 + MLT1E LTR MaLR 10 189 -378 443 114 18 53 chr3 170636992 170637106 -47400052 + (TC)n Simple_repeat Simple_repeat 2 111 0 2329 65 7 0 chr3 170638356 170638647 -47398511 + AluY SINE Alu 1 293 -18 335 306 36 9 chr3 170638653 170638764 -47398394 + MIR SINE MIR 91 204 -58 1174 193 58 97 chr3 170640980 170641435 -47395723 - MLT1C LTR MaLR -27 515 4 2249 86 7 0 chr3 170641694 170641984 -47395174 - AluSc SINE Alu 0 309 18 228 138 11 184 chr3 170644332 170644419 -47392739 + MLT1L LTR MaLR 1 72 -543 381 302 10 0 chr3 170644446 170644551 -47392607 + MLT1L LTR MaLR 119 288 -327 229 296 70 0 chr3 170644616 170644687 -47392471 + MLT1L LTR MaLR 309 384 -231 485 225 40 33 chr3 170644966 170645159 -47391999 + MLT1I LTR MaLR 267 409 0 1705 235 53 13 chr3 170645443 170645839 -47391319 + LTR16C LTR ERVL 79 490 -1 289 218 13 13 chr3 170646057 170646135 -47391023 + LTR67 LTR ERVL 458 535 -22 182 36 0 36 chr3 170646435 170646463 -47390695 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1641 196 129 11 chr3 170646658 170647098 -47390060 + L1MC4a LINE L1 6868 7359 -449 947 223 76 148 chr3 170647098 170647706 -47389452 + MLT2B3 LTR ERVL 1 482 -33 2538 102 17 11 chr3 170647706 170648059 -47389099 - THE1A LTR MaLR 0 355 1 947 223 76 148 chr3 170648059 170648091 -47389067 + MLT2B3 LTR ERVL 482 515 0 2454 250 47 17 chr3 170648112 170648755 -47388403 + ERVL-B3 LTR ERVL 55 716 -5048 1408 240 30 0 chr3 170648812 170649145 -47388013 + L1MD3 LINE L1 7645 7987 -8 38 93 0 0 chr3 170649359 170649467 -47387691 + AT_rich Low_complexity Low_complexity 1 108 0 257 209 30 30 chr3 170649727 170649794 -47387364 - MIR SINE MIR -18 244 178 1035 113 60 0 chr3 170649794 170649945 -47387213 - LTR45 LTR ERV1 0 525 366 1058 185 81 5 chr3 170649946 170650157 -47387001 + AluJb SINE Alu 86 312 0 2538 127 8 5 chr3 170650162 170650533 -47386625 - LTR45 LTR ERV1 -153 372 1 187 298 18 0 chr3 170650595 170650652 -47386506 - MIR SINE MIR -200 62 5 559 310 108 43 chr3 170651339 170651784 -47385374 - Charlie8 DNA MER1_type -1896 521 48 504 267 256 8 chr3 170651784 170651878 -47385280 + L2 LINE L2 1990 2059 -1255 1651 110 46 0 chr3 170651878 170652097 -47385061 + MER30 DNA MER1_type 2 230 0 504 267 256 8 chr3 170652097 170652365 -47384793 + L2 LINE L2 2059 2442 -872 209 296 12 37 chr3 170652438 170652519 -47384639 + L2 LINE L2 2962 3040 -232 259 112 3 0 chr3 170652519 170652562 -47384596 - MER45A DNA AcHobo 0 178 135 1013 292 69 65 chr3 170652642 170653162 -47383996 - MER45C DNA AcHobo -431 522 1 2185 127 0 6 chr3 170653704 170654018 -47383140 + AluSx SINE Alu 1 312 0 333 68 0 0 chr3 170654018 170654062 -47383096 + (GGAA)n Simple_repeat Simple_repeat 2 45 0 1056 106 11 11 chr3 170654062 170654242 -47382916 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 315 332 47 39 chr3 170655394 170655536 -47381622 + ERVL-B3 LTR ERVL 1548 1647 -3349 1200 176 11 0 chr3 170655536 170655723 -47381435 + MER5A DNA MER1_type 1 189 0 315 332 47 39 chr3 170655723 170655880 -47381278 + ERVL-B3 LTR ERVL 1647 1801 -3195 417 20 0 0 chr3 170656091 170656141 -47381017 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 921 366 16 16 chr3 170656152 170656654 -47380504 + ERVL-B3 LTR ERVL 2414 2915 -2570 550 347 37 20 chr3 170656648 170657051 -47380107 + ERVL-B3 LTR ERVL 3366 3775 -1989 * 529 280 12 48 chr3 170657041 170657209 -47379949 + ERVL-B3 LTR ERVL 4038 4199 -1565 * 430 280 66 16 chr3 170657220 170657402 -47379756 + ERVL-B3 LTR ERVL 4779 4969 -795 335 319 55 20 chr3 170659184 170659359 -47377799 + MIR SINE MIR 3 192 -61 285 283 99 119 chr3 170659643 170659996 -47377162 - L2 LINE L2 0 3272 2927 2324 94 3 0 chr3 170660544 170660842 -47376316 + AluY SINE Alu 1 299 -12 17798 149 24 28 chr3 170660960 170663007 -47374151 + L1M1 LINE L1 704 2717 -4848 2198 128 0 0 chr3 170663007 170663304 -47373854 + AluSq SINE Alu 1 297 -16 17798 149 24 28 chr3 170663304 170664778 -47372380 + L1M1 LINE L1 2717 4197 -3368 43489 35 22 1 chr3 170664778 170670664 -47366494 + L1PA2 LINE L1 1 6012 -143 243 119 34 17 chr3 170670785 170670844 -47366314 + CT-rich Low_complexity Low_complexity 2 61 0 384 22 0 0 chr3 170670844 170670889 -47366269 + (CA)n Simple_repeat Simple_repeat 1 45 0 1297 219 39 19 chr3 170670899 170671209 -47365949 + MLT1F1 LTR MaLR 248 563 -4 688 283 53 78 chr3 170671221 170671634 -47365524 - LTR67 LTR ERVL -152 405 3 2273 96 0 13 chr3 170671991 170672293 -47364865 + AluSx SINE Alu 1 298 -14 2229 110 0 19 chr3 170672299 170672607 -47364551 + AluSx SINE Alu 1 302 -10 11622 118 57 32 chr3 170673778 170674117 -47363041 - Tigger1 DNA MER2_type 0 2418 2089 1917 86 4 4 chr3 170674117 170674386 -47362772 - AluSq SINE Alu 0 307 39 11622 118 57 32 chr3 170674386 170674684 -47362474 - Tigger1 DNA MER2_type -329 2089 1800 1991 67 35 4 chr3 170674684 170674938 -47362220 - AluY SINE Alu -13 298 37 11622 118 57 32 chr3 170674938 170675700 -47361458 - Tigger1 DNA MER2_type -618 1800 956 2249 114 0 0 chr3 170675700 170675998 -47361160 + AluSx SINE Alu 1 298 -14 11622 118 57 32 chr3 170675998 170676508 -47360650 - Tigger1 DNA MER2_type -1462 956 460 6687 124 63 19 chr3 170676519 170676794 -47360364 + L1PB1 LINE L1 1 262 -6601 2233 133 15 56 chr3 170676794 170677185 -47359973 + THE1C LTR MaLR 1 375 0 10385 119 59 9 chr3 170677185 170677622 -47359536 + THE1C-int LTR MaLR 1 415 -1165 2351 110 3 0 chr3 170677622 170677930 -47359228 + AluSq SINE Alu 1 309 -4 10385 119 59 9 chr3 170677930 170678997 -47358161 + THE1C-int LTR MaLR 415 1580 0 2068 131 39 65 chr3 170678997 170679380 -47357778 + THE1C LTR MaLR 1 373 -2 6687 124 63 19 chr3 170679380 170680212 -47356946 + L1PB1 LINE L1 261 1159 -5704 15532 181 32 34 chr3 170680214 170685751 -47351407 + L1PB1 LINE L1 1290 6867 0 2480 174 2 39 chr3 170685761 170686250 -47350908 - Tigger1 DNA MER2_type -1944 474 4 42789 33 1 1 chr3 170686251 170692407 -47344751 + L1PA3 LINE L1 1 6152 -3 2270 105 6 10 chr3 170695520 170695833 -47341325 + AluSx SINE Alu 1 312 0 816 182 30 110 chr3 170695874 170696110 -47341048 + MER20 DNA MER1_type 3 219 0 345 362 55 73 chr3 170696573 170697203 -47339955 - L2 LINE L2 -5 3267 2637 223 217 50 33 chr3 170697375 170697435 -47339723 + L2 LINE L2 3198 3258 -55 1955 137 33 7 chr3 170697465 170697764 -47339394 - AluSx SINE Alu -5 307 1 198 0 0 0 chr3 170698903 170698925 -47338233 + (TTC)n Simple_repeat Simple_repeat 1 22 0 551 243 99 28 chr3 170699068 170699249 -47337909 + MIR SINE MIR 43 236 -26 188 308 0 46 chr3 170699449 170699514 -47337644 + L2 LINE L2 3211 3272 0 712 250 197 28 chr3 170699571 170699931 -47337227 + MLT1J2 LTR MaLR 1 421 -29 587 275 167 22 chr3 170700197 170700466 -47336692 - MER102b DNA MER1_type -1 340 33 1706 90 0 5 chr3 170700502 170700725 -47336433 + AluSq SINE Alu 75 296 -17 1795 179 22 47 chr3 170700880 170701287 -47335871 + MLT2C1 LTR ERVL 1 397 0 21 36 0 0 chr3 170701610 170701638 -47335520 + AT_rich Low_complexity Low_complexity 1 28 0 1327 141 80 19 chr3 170702751 170703014 -47334144 - Tigger7 DNA MER2_type 0 2487 2209 974 195 6 0 chr3 170703018 170703187 -47333971 - Tigger7 DNA MER2_type -562 171 2 413 280 121 16 chr3 170703514 170703696 -47333462 + MIR SINE MIR 30 230 -32 336 381 101 40 chr3 170705066 170705489 -47331669 + L2 LINE L2 165 561 -2753 5794 15 0 1 chr3 170705489 170706149 -47331009 - L1PA3 LINE L1 -1 6154 5496 2027 132 10 0 chr3 170706149 170706437 -47330721 - AluSx SINE Alu -21 291 1 336 381 101 40 chr3 170706437 170706645 -47330513 + L2 LINE L2 560 836 -2478 189 301 90 45 chr3 170706995 170707128 -47330030 + L2 LINE L2 1275 1413 -1901 358 314 162 67 chr3 170707322 170708222 -47328936 + L2 LINE L2 1890 2875 -439 219 36 0 0 chr3 170708282 170708310 -47328848 + (TC)n Simple_repeat Simple_repeat 1 28 0 921 219 0 0 chr3 170708312 170708467 -47328691 - FAM SINE Alu -19 156 2 24 0 0 0 chr3 170708467 170708491 -47328667 + AT_rich Low_complexity Low_complexity 1 24 0 293 300 146 0 chr3 170708496 170708606 -47328552 + L2 LINE L2 3182 3307 -6 2259 93 3 22 chr3 170708639 170708951 -47328207 + AluSc SINE Alu 1 306 -3 1823 171 58 16 chr3 170709644 170710024 -47327134 + MSTB LTR MaLR 4 399 -27 2270 109 3 6 chr3 170710041 170710353 -47326805 - AluSx SINE Alu -1 311 1 1050 150 0 0 chr3 170710456 170710694 -47326464 + (TA)n Simple_repeat Simple_repeat 1 238 0 2075 113 7 3 chr3 170711365 170711676 -47325482 - AluSx SINE Alu 0 312 1 300 323 21 0 chr3 170712005 170712101 -47325057 + MIR3 SINE MIR 78 175 -33 264 30 0 0 chr3 170713060 170713093 -47324065 + (TG)n Simple_repeat Simple_repeat 2 34 0 358 264 79 8 chr3 170713203 170713381 -47323777 + MIR SINE MIR 30 260 -2 446 324 57 33 chr3 170714892 170715146 -47322012 - MIR SINE MIR 0 262 6 288 280 93 70 chr3 170715633 170715793 -47321365 - HAL1 LINE L1 -2 2505 2350 1885 109 44 0 chr3 170715793 170716067 -47321091 - AluSx SINE Alu -26 286 1 288 280 93 70 chr3 170716067 170716420 -47320738 - HAL1 LINE L1 -157 2350 1980 573 223 99 79 chr3 170716636 170717099 -47320059 - HAL1 LINE L1 -871 1636 1032 1569 163 0 77 chr3 170717099 170717412 -47319746 - AluJo SINE Alu -19 293 5 573 223 99 79 chr3 170717412 170717613 -47319545 - HAL1 LINE L1 -1475 1032 836 1210 287 51 40 chr3 170717692 170718224 -47318934 - MLT1H LTR MaLR 0 626 12 761 269 152 53 chr3 170718224 170718292 -47318866 - HAL1 LINE L1 -1966 541 481 2164 120 0 3 chr3 170718292 170718583 -47318575 - AluSx SINE Alu -22 290 1 761 269 152 53 chr3 170718583 170718968 -47318190 - HAL1 LINE L1 -2026 481 43 2164 132 0 0 chr3 170719217 170719528 -47317630 + AluSx SINE Alu 1 311 -1 1324 176 99 4 chr3 170720052 170720314 -47316844 - AluJo SINE Alu -25 287 1 276 30 0 0 chr3 170720596 170720629 -47316529 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 317 307 128 11 chr3 170721185 170721364 -47315794 - L1ME LINE L1 -399 5722 5523 1133 179 24 14 chr3 170721428 170721635 -47315523 + AluJo SINE Alu 85 293 -19 319 207 157 16 chr3 170721640 170721761 -47315397 - L1ME LINE L1 -730 5434 5297 549 167 38 162 chr3 170722827 170723037 -47314121 - MER21B LTR ERV1 -679 184 1 1105 212 59 59 chr3 170723183 170723608 -47313550 + MER39 LTR ERV1 260 684 -23 211 370 34 0 chr3 170723718 170723837 -47313321 - MIR SINE MIR -36 226 104 328 119 48 0 chr3 170724194 170724278 -47312880 + (TCTG)n Simple_repeat Simple_repeat 2 89 0 198 71 0 0 chr3 170724280 170724308 -47312850 + (CA)n Simple_repeat Simple_repeat 1 28 0 2374 143 36 28 chr3 170725642 170726110 -47311048 + L1MB7 LINE L1 5619 6090 -94 2176 105 10 13 chr3 170726110 170726416 -47310742 - AluSp SINE Alu -8 305 1 2300 106 0 3 chr3 170726440 170726751 -47310407 - AluSx SINE Alu -2 310 1 573 111 19 9 chr3 170726752 170726860 -47310298 + L1MB7 LINE L1 6076 6184 0 225 286 18 0 chr3 170726864 170726920 -47310238 + L3 LINE CR1 1448 1504 -73 55 72 0 0 chr3 170727413 170727524 -47309634 + AT_rich Low_complexity Low_complexity 1 111 0 232 263 112 7 chr3 170728137 170728289 -47308869 + L1M4 LINE L1 2677 2844 -3302 454 296 110 38 chr3 170728319 170728637 -47308521 + L1M4 LINE L1 2941 3281 -2865 2186 108 28 0 chr3 170730793 170731081 -47306077 + AluSq SINE Alu 1 296 -17 246 279 135 9 chr3 170731728 170731839 -47305319 - MIR3 SINE MIR -43 165 41 376 336 14 7 chr3 170733135 170733275 -47303883 + MIR3 SINE MIR 57 197 -11 1007 168 48 139 chr3 170733548 170733900 -47303258 - MER58B DNA MER1_type 0 341 22 568 304 57 31 chr3 170734164 170734391 -47302767 - MIR SINE MIR -3 259 27 2505 59 0 0 chr3 170734665 170734969 -47302189 + AluY SINE Alu 1 304 -7 1344 62 0 0 chr3 170734955 170735117 -47302041 + AluY SINE Alu 119 280 -31 217 0 0 0 chr3 170735117 170735141 -47302017 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 353 212 24 0 chr3 170735585 170735670 -47301488 + MLT1L LTR MaLR 15 101 -514 1471 157 102 3 chr3 170735767 170736099 -47301059 + Charlie1 DNA MER1_type 2343 2707 -54 1277 185 4 4 chr3 170736141 170736373 -47300785 - AluJo SINE Alu -80 232 1 899 243 89 48 chr3 170736434 170736571 -47300587 + MLT1L LTR MaLR 172 302 -313 2144 100 3 39 chr3 170736571 170736880 -47300278 + AluY SINE Alu 1 298 -13 899 243 89 48 chr3 170736880 170737158 -47300000 + MLT1L LTR MaLR 302 604 -11 311 238 30 30 chr3 170737542 170737643 -47299515 - MIR3 SINE MIR -30 178 78 1972 123 0 7 chr3 170738671 170738955 -47298203 + AluSx SINE Alu 15 296 -16 184 377 18 18 chr3 170739452 170739566 -47297592 - L2 LINE L2 -401 2913 2800 1362 200 19 0 chr3 170739844 170740074 -47297084 + MLT2B3 LTR ERVL 280 517 -37 246 32 0 0 chr3 170740074 170740105 -47297053 + (TCTA)n Simple_repeat Simple_repeat 3 33 0 1362 200 19 0 chr3 170740105 170740144 -47297014 + MLT2B3 LTR ERVL 517 554 0 21 0 0 0 chr3 170740343 170740364 -47296794 + AT_rich Low_complexity Low_complexity 1 21 0 2359 92 0 0 chr3 170742270 170742565 -47294593 + AluSq SINE Alu 1 295 -18 785 234 128 0 chr3 170742999 170743217 -47293941 + MIR SINE MIR 14 259 -3 1080 222 57 66 chr3 170743249 170743582 -47293576 + MLT1A2 LTR MaLR 45 374 0 296 329 24 56 chr3 170744510 170744723 -47292435 - L3b LINE CR1 -98 1485 1280 2390 48 0 10 chr3 170745353 170745645 -47291513 - AluY SINE Alu -22 289 1 26 30 0 0 chr3 170745652 170745685 -47291473 + AT_rich Low_complexity Low_complexity 1 33 0 201 169 14 28 chr3 170745847 170745918 -47291240 + (TA)n Simple_repeat Simple_repeat 2 71 0 1076 229 100 0 chr3 170746072 170746373 -47290785 - L1MB7 LINE L1 -11 6173 5843 783 221 84 20 chr3 170746461 170746760 -47290398 + L1MC4a LINE L1 5752 6069 -1739 2068 152 36 3 chr3 170746829 170747165 -47289993 - MER7A DNA MER2_type 0 346 2 437 254 0 55 chr3 170747187 170747352 -47289806 + L1MC4 LINE L1 6624 6779 -1263 214 376 20 30 chr3 170747744 170747845 -47289313 + L2 LINE L2 3166 3265 -7 200 287 149 0 chr3 170747879 170747983 -47289175 + MIR SINE MIR 24 143 -103 1619 185 0 7 chr3 170748184 170748470 -47288688 + AluJo SINE Alu 1 284 -28 31 58 0 0 chr3 170748521 170748573 -47288585 + AT_rich Low_complexity Low_complexity 1 52 0 2331 198 63 16 chr3 170749094 170749669 -47287489 + MER41-int LTR ERV1 13 1481 -4465 302 210 37 12 chr3 170749647 170749728 -47287430 + MER41-int LTR ERV1 763 845 -5486 * 22 0 0 0 chr3 170749749 170749771 -47287387 + AT_rich Low_complexity Low_complexity 1 22 0 275 220 97 9 chr3 170749771 170749951 -47287207 + MER41-int LTR ERV1 845 1104 -5227 * 4794 176 14 31 chr3 170749920 170750883 -47286275 + MER41-int LTR ERV1 1477 2422 -3524 983 271 60 29 chr3 170750999 170751350 -47285808 + MER41-int LTR ERV1 3046 3407 -4130 249 143 20 0 chr3 170751353 170751402 -47285756 + MER34C LTR ERV1 170 219 -366 1032 160 54 67 chr3 170751453 170751813 -47285345 + MER41-int LTR ERV1 1843 2206 -3740 1821 137 32 7 chr3 170751813 170752097 -47285061 - AluJb SINE Alu -8 304 14 1032 160 54 67 chr3 170752097 170752151 -47285007 + MER41-int LTR ERV1 2206 2992 -2954 15101 186 32 35 chr3 170752154 170754448 -47282710 + L1PB1 LINE L1 1 2301 -4566 2225 123 0 3 chr3 170754448 170754758 -47282400 + AluSq SINE Alu 3 311 -2 15101 186 32 35 chr3 170754758 170755489 -47281669 + L1PB1 LINE L1 2301 3033 -3834 2017 107 47 3 chr3 170755489 170755787 -47281371 + AluSx SINE Alu 1 311 -1 15101 186 32 35 chr3 170755787 170756403 -47280755 + L1PB1 LINE L1 3033 3650 -3217 2102 137 33 0 chr3 170756403 170756525 -47280633 + AluSq SINE Alu 1 117 -196 207 0 0 0 chr3 170756525 170756548 -47280610 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2102 137 33 0 chr3 170756548 170756724 -47280434 + AluSq SINE Alu 117 309 -4 15101 186 32 35 chr3 170756724 170756997 -47280161 + L1PB1 LINE L1 3650 3922 -2945 2232 116 10 0 chr3 170756997 170757299 -47279859 + AluSp SINE Alu 1 305 -8 15101 186 32 35 chr3 170757299 170760286 -47276872 + L1PB1 LINE L1 3922 6860 -7 1489 156 51 11 chr3 170760286 170760561 -47276597 + MER41-int LTR ERV1 2973 3258 -2688 7858 157 77 57 chr3 170760619 170762753 -47274405 + MER41-int LTR ERV1 3390 5789 -542 362 100 17 0 chr3 170762893 170762953 -47274205 + MER41-int LTR ERV1 5994 6054 -277 736 148 8 8 chr3 170763019 170763147 -47274011 - AluJb SINE Alu -17 295 168 2111 147 8 11 chr3 170763154 170763515 -47273643 + LTR35 LTR ERV1 259 618 0 207 141 141 0 chr3 170763632 170763703 -47273455 + (CAGTA)n Simple_repeat Simple_repeat 3 83 0 228 167 0 0 chr3 170763847 170763895 -47273263 + A-rich Low_complexity Low_complexity 1 48 0 27734 99 10 11 chr3 170765033 170769674 -47267484 + L1P3 LINE L1 710 5368 -1093 264 222 0 32 chr3 170769815 170769878 -47267280 - MER5B DNA MER1_type -1 177 117 2119 45 29 84 chr3 170769882 170770193 -47266965 + AluY SINE Alu 1 294 -17 263 196 0 0 chr3 170770207 170770258 -47266900 - MIR SINE MIR -102 160 110 216 0 0 0 chr3 170770378 170770402 -47266756 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 246 262 56 103 chr3 170770407 170770467 -47266691 + MER5B DNA MER1_type 59 111 -67 306 73 0 0 chr3 170770467 170770508 -47266650 + (TCCA)n Simple_repeat Simple_repeat 4 44 0 246 262 56 103 chr3 170770508 170770573 -47266585 + MER5B DNA MER1_type 111 178 0 2113 120 7 0 chr3 170770912 170771204 -47265954 - AluSx SINE Alu -16 296 3 1004 191 68 141 chr3 170771311 170771867 -47265291 + MER39 LTR ERV1 5 707 0 215 303 34 34 chr3 170772227 170772316 -47264842 + MIR SINE MIR 168 256 -6 396 326 145 7 chr3 170772448 170772752 -47264406 + L2 LINE L2 2164 2509 -805 328 319 256 21 chr3 170772915 170773298 -47263860 + L2 LINE L2 2841 3313 0 460 296 107 10 chr3 170776504 170776552 -47260606 + L2 LINE L2 3098 3140 -173 354 61 0 0 chr3 170776552 170776601 -47260557 + (CA)n Simple_repeat Simple_repeat 1 49 0 460 296 107 10 chr3 170776601 170776748 -47260410 + L2 LINE L2 3140 3312 -1 1759 150 27 3 chr3 170776778 170777072 -47260086 + AluSx SINE Alu 1 301 -11 575 270 13 25 chr3 170778088 170778247 -47258911 + MIR SINE MIR 80 236 -26 382 221 110 43 chr3 170778973 170779386 -47257772 - MLT1L LTR MaLR -7 608 101 252 122 0 0 chr3 170779445 170779486 -47257672 + (TTG)n Simple_repeat Simple_repeat 2 42 0 2243 95 10 3 chr3 170779605 170779899 -47257259 + AluSp SINE Alu 1 296 -17 833 191 83 68 chr3 170779924 170780202 -47256956 + MER5C DNA MER1_type 29 310 -14 21 0 0 0 chr3 170780354 170780375 -47256783 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 170782143 170782164 -47254994 + AT_rich Low_complexity Low_complexity 1 21 0 1735 158 7 10 chr3 170782317 170782614 -47254544 + AluJb SINE Alu 1 296 -16 2005 138 165 5 chr3 170782875 170783244 -47253914 + MSTA LTR MaLR 1 428 0 239 273 140 28 chr3 170783550 170783693 -47253465 - L2 LINE L2 -542 2772 2614 701 145 0 0 chr3 170784602 170784719 -47252439 + L1M1 LINE L1 2930 3046 -4519 923 112 12 12 chr3 170784722 170784883 -47252275 + L1MA4 LINE L1 6139 6299 -1 22 35 0 0 chr3 170784883 170784912 -47252246 + AT_rich Low_complexity Low_complexity 1 29 0 786 262 13 22 chr3 170785167 170785392 -47251766 - MIR SINE MIR 0 262 40 1338 150 0 0 chr3 170785550 170785777 -47251381 + MLT2B1 LTR ERVL 1 227 -293 995 220 72 57 chr3 170785934 170786081 -47251077 + MLT1F LTR MaLR 41 184 -383 2205 127 3 0 chr3 170786081 170786388 -47250770 - AluSx SINE Alu -4 308 1 995 220 72 57 chr3 170786388 170786679 -47250479 + MLT1F LTR MaLR 184 559 -8 504 226 61 17 chr3 170786837 170786952 -47250206 + L2 LINE L2 3193 3312 -1 221 287 85 21 chr3 170787077 170787171 -47249987 - MIR3 SINE MIR -36 172 73 1978 141 0 0 chr3 170787460 170787777 -47249381 + AluSx SINE Alu 1 317 0 912 233 0 0 chr3 170788341 170788513 -47248645 - FAM SINE Alu -3 172 1 1451 143 70 23 chr3 170788618 170788876 -47248282 - AluJb SINE Alu -14 298 29 2033 189 16 43 chr3 170788878 170789371 -47247787 - MER74A LTR ERVL -78 480 1 479 256 22 57 chr3 170790040 170790181 -47246977 + MLT1F1 LTR MaLR 1 137 -446 30 0 0 0 chr3 170790843 170790873 -47246285 + AT_rich Low_complexity Low_complexity 1 30 0 425 337 85 23 chr3 170791694 170792311 -47244847 - L2 LINE L2 -1 3312 2574 2348 85 0 0 chr3 170792836 170793130 -47244028 + AluY SINE Alu 1 294 -17 279 259 108 12 chr3 170793864 170793934 -47243224 + L1MC4 LINE L1 5355 5417 -749 1949 113 0 0 chr3 170793934 170794190 -47242968 + AluSx SINE Alu 40 295 -17 279 259 108 12 chr3 170794190 170794509 -47242649 + L1MC4 LINE L1 5417 5544 -622 190 270 68 14 chr3 170795736 170795810 -47241348 - MIR SINE MIR -8 254 177 * 506 319 83 24 chr3 170795796 170796169 -47240989 + L2 LINE L2 471 865 -2449 314 283 0 22 chr3 170796234 170796326 -47240832 + L1MC4 LINE L1 6614 6703 -1339 603 217 8 8 chr3 170796337 170796457 -47240701 - FLAM_C SINE Alu -23 120 1 3054 287 226 15 chr3 170796490 170798286 -47238872 + L2 LINE L2 895 3070 -243 1720 178 26 7 chr3 170798293 170798597 -47238561 + AluJb SINE Alu 1 310 -2 27 49 0 0 chr3 170798982 170799023 -47238135 + AT_rich Low_complexity Low_complexity 1 41 0 401 334 124 29 chr3 170799704 170799800 -47237358 + LTR16C LTR ERVL 85 170 -321 1486 247 87 35 chr3 170799800 170800315 -47236843 - MLT1F LTR MaLR 0 542 1 401 334 124 29 chr3 170800315 170800532 -47236626 + LTR16C LTR ERVL 170 428 -63 198 364 0 11 chr3 170800562 170800650 -47236508 - MIR SINE MIR -167 95 9 344 351 0 0 chr3 170800883 170800960 -47236198 - MER91A DNA MER1_type -53 143 67 495 289 74 45 chr3 170801419 170801932 -47235226 + L1M4 LINE L1 3798 4325 -1821 1405 222 111 8 chr3 170802098 170802485 -47234673 + L1MEc LINE L1 35 461 -5935 24 85 0 0 chr3 170803606 170803665 -47233493 + AT_rich Low_complexity Low_complexity 1 59 0 1713 196 10 10 chr3 170804278 170804454 -47232704 - AluJb SINE Alu 0 312 134 2295 94 19 0 chr3 170804454 170804761 -47232397 - AluSq SINE Alu 0 313 1 1713 196 10 10 chr3 170804761 170804896 -47232262 - AluJb SINE Alu -177 135 1 300 27 0 0 chr3 170806055 170806092 -47231066 + tRNA-Glu-GAG tRNA tRNA 1 37 -38 1681 165 9 53 chr3 170807134 170807456 -47229702 + AluJo SINE Alu 1 308 -4 2152 119 3 0 chr3 170807622 170807924 -47229234 - AluSx SINE Alu -7 305 3 224 318 56 63 chr3 170808581 170808707 -47228451 + L2 LINE L2 3143 3267 -5 792 246 28 23 chr3 170809398 170809613 -47227545 - MER58A DNA MER1_type -8 216 1 478 248 50 50 chr3 170809705 170809866 -47227292 - MIR SINE MIR -50 212 52 1038 259 96 27 chr3 170809878 170810253 -47226905 + MLT1J2 LTR MaLR 4 404 -46 466 271 106 48 chr3 170810903 170811297 -47225861 - L1ME LINE L1 -239 5882 5452 198 0 0 0 chr3 170811856 170811878 -47225280 + (TG)n Simple_repeat Simple_repeat 2 23 0 2183 102 0 62 chr3 170812547 170812872 -47224286 + AluSx SINE Alu 1 305 -7 2177 126 3 0 chr3 170813375 170813676 -47223482 + AluSx SINE Alu 1 302 -10 1713 181 4 0 chr3 170814061 170814327 -47222831 + AluJb SINE Alu 1 267 -45 211 200 0 0 chr3 170815011 170815051 -47222107 + (CATTT)n Simple_repeat Simple_repeat 3 42 0 500 299 58 0 chr3 170815881 170816035 -47221123 + MIR SINE MIR 23 185 -77 275 296 56 60 chr3 170816510 170816743 -47220415 + HAL1 LINE L1 2245 2476 -31 298 284 67 41 chr3 170816761 170817103 -47220055 + L1M4 LINE L1 4368 4718 -1428 333 287 51 19 chr3 170817658 170817815 -47219343 + L2 LINE L2 2592 2753 -561 216 0 0 0 chr3 170817815 170817839 -47219319 + (T)n Simple_repeat Simple_repeat 1 24 0 349 335 155 18 chr3 170817900 170818184 -47218974 + L2 LINE L2 2943 3265 -7 289 235 12 62 chr3 170818773 170818854 -47218304 - MIR SINE MIR -76 186 110 225 182 0 0 chr3 170821301 170821345 -47215813 + (CA)n Simple_repeat Simple_repeat 2 45 0 862 248 48 0 chr3 170822256 170822462 -47214696 + MIR SINE MIR 1 216 -46 182 316 0 0 chr3 170823548 170823586 -47213572 + L2 LINE L2 3256 3293 -20 453 197 71 49 chr3 170823889 170824072 -47213086 - MER53 DNA DNA 0 189 3 220 260 110 31 chr3 170824110 170824237 -47212921 + MIR SINE MIR 113 249 -13 550 268 141 9 chr3 170824473 170824686 -47212472 - MIR SINE MIR -2 260 20 29 0 0 0 chr3 170824835 170824864 -47212294 + AT_rich Low_complexity Low_complexity 1 29 0 2391 79 0 0 chr3 170824867 170825157 -47212001 + AluSg SINE Alu 1 290 -20 460 262 67 75 chr3 170825339 170825950 -47211208 + L1ME4a LINE L1 5515 6120 -1 813 268 29 21 chr3 170826054 170826293 -47210865 - MIR SINE MIR -7 255 15 296 285 19 63 chr3 170827321 170827479 -47209679 - MIR SINE MIR -67 195 45 257 350 36 46 chr3 170829364 170829670 -47207488 - L3b LINE CR1 -66 1517 1215 302 271 0 0 chr3 170829759 170829829 -47207329 + L2 LINE L2 3195 3264 -49 264 289 67 35 chr3 170830333 170830462 -47206696 + MIR SINE MIR 28 155 -74 573 230 8 0 chr3 170830500 170830626 -47206532 - MER45A DNA AcHobo 0 178 52 284 229 14 0 chr3 170830823 170830893 -47206265 + L1MC4 LINE L1 7848 7918 -124 219 286 16 0 chr3 170831029 170831092 -47206066 + L2 LINE L2 3190 3253 -60 475 157 35 26 chr3 170833201 170833316 -47203842 + L1M1 LINE L1 22 137 -7428 * 8889 132 98 18 chr3 170833310 170834950 -47202208 + L1M1 LINE L1 1105 2875 -4690 187 242 198 33 chr3 170834951 170835042 -47202116 + MIR3 SINE MIR 64 169 -39 349 169 270 0 chr3 170835601 170835690 -47201468 - MER5A DNA MER1_type -30 159 47 241 257 195 18 chr3 170835898 170836011 -47201147 + MIR SINE MIR 11 143 -119 818 87 0 0 chr3 170836704 170836808 -47200350 + AluSc SINE Alu 190 293 -16 241 262 56 103 chr3 170837147 170837212 -47199946 - MER5B DNA MER1_type 0 178 120 306 73 0 0 chr3 170837212 170837253 -47199905 + (TGGA)n Simple_repeat Simple_repeat 4 44 0 241 262 56 103 chr3 170837253 170837313 -47199845 - MER5B DNA MER1_type -58 120 59 207 0 0 0 chr3 170837318 170837341 -47199817 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 262 196 0 0 chr3 170837464 170837515 -47199643 + MIR SINE MIR 110 160 -102 2144 39 29 84 chr3 170837529 170837838 -47199320 - AluY SINE Alu -19 292 1 258 222 0 32 chr3 170837842 170837905 -47199253 + MER5B DNA MER1_type 117 177 -1 344 211 100 0 chr3 170837961 170838051 -47199107 + L1ME4a LINE L1 6021 6119 -2 2196 129 0 0 chr3 170838087 170838398 -47198760 + AluSq SINE Alu 1 311 -2 652 165 17 91 chr3 170838652 170838828 -47198330 + MER5B DNA MER1_type 16 178 0 189 0 0 0 chr3 170839392 170839413 -47197745 + (T)n Simple_repeat Simple_repeat 1 21 0 469 267 64 147 chr3 170839976 170840302 -47196856 - L2 LINE L2 -4 3268 2970 301 318 68 17 chr3 170840394 170840570 -47196588 - L2 LINE L2 -942 2372 2188 21 0 0 0 chr3 170842710 170842731 -47194427 + AT_rich Low_complexity Low_complexity 1 21 0 275 259 86 43 chr3 170843039 170843155 -47194003 - MIR3 SINE MIR -11 197 77 2361 87 7 10 chr3 170843508 170843818 -47193340 - AluSq SINE Alu -4 309 1 315 0 0 0 chr3 170844264 170844299 -47192859 + (CA)n Simple_repeat Simple_repeat 1 35 0 326 246 164 22 chr3 170844502 170844636 -47192522 - MIR3 SINE MIR -26 182 30 203 162 0 0 chr3 170845990 170846027 -47191131 + T-rich Low_complexity Low_complexity 5 41 0 429 314 0 59 chr3 170846623 170846776 -47190382 - MIR3 SINE MIR -21 187 44 21 0 0 0 chr3 170846782 170846803 -47190355 + AT_rich Low_complexity Low_complexity 1 21 0 231 299 51 51 chr3 170846884 170847021 -47190137 + MIR SINE MIR 100 236 -26 292 240 93 71 chr3 170847425 170847638 -47189520 + MIR SINE MIR 21 237 -25 208 349 76 41 chr3 170850115 170850287 -47186871 - MIR SINE MIR -56 206 29 2354 102 0 0 chr3 170850344 170850648 -47186510 + AluSc SINE Alu 1 304 -5 1017 100 8 0 chr3 170850654 170850784 -47186374 + AluSg SINE Alu 1 131 -179 2348 79 14 0 chr3 170850788 170851078 -47186080 + AluSg SINE Alu 1 294 -16 1015 236 101 55 chr3 170851078 170851372 -47185786 + MLT1G3 LTR MaLR 4 283 -284 1987 145 78 20 chr3 170851372 170851717 -47185441 + MLT1A1 LTR MaLR 1 365 0 1015 236 101 55 chr3 170851717 170851853 -47185305 + MLT1G3 LTR MaLR 283 411 -156 1880 108 97 0 chr3 170851853 170852122 -47185036 + AluSq SINE Alu 1 295 -18 1015 236 101 55 chr3 170852122 170852195 -47184963 + MLT1G3 LTR MaLR 411 559 -8 707 182 25 0 chr3 170852534 170852655 -47184503 + MER5B DNA MER1_type 1 124 -54 321 226 80 72 chr3 170852833 170852984 -47184174 - MIR3 SINE MIR -28 180 31 4000 152 22 13 chr3 170853328 170854017 -47183141 - L1MC1 LINE L1 -270 6063 5369 4539 190 35 55 chr3 170854157 170854525 -47182633 + L1 LINE L1 4012 4386 -1760 2466 84 0 0 chr3 170854525 170854821 -47182337 + AluSg SINE Alu 1 296 -14 4539 190 35 55 chr3 170854821 170855361 -47181797 + L1 LINE L1 4386 4893 -1253 2136 114 0 3 chr3 170855361 170855650 -47181508 + AluSx SINE Alu 21 308 -4 4539 190 35 55 chr3 170855650 170855896 -47181262 + L1 LINE L1 4893 5143 -1003 2268 96 6 40 chr3 170856145 170856468 -47180690 - AluSp SINE Alu -1 312 1 1070 86 0 29 chr3 170856468 170856608 -47180550 - AluSq/x SINE Alu -176 136 1 954 217 0 58 chr3 170856610 170856774 -47180384 - AluJo SINE Alu -15 297 148 2339 99 0 0 chr3 170856774 170857076 -47180082 - AluSx SINE Alu -10 302 1 954 217 0 58 chr3 170857076 170857137 -47180021 - AluJo SINE Alu -164 148 85 2379 81 3 13 chr3 170857145 170857454 -47179704 - AluSp SINE Alu -7 306 1 324 200 17 0 chr3 170857504 170857564 -47179594 - L1ME LINE L1 -537 5584 5524 2203 209 61 43 chr3 170857632 170858098 -47179060 - L1ME3A LINE L1 -197 5973 5492 2441 62 14 0 chr3 170858098 170858390 -47178768 - AluY SINE Alu -9 302 7 2203 209 61 43 chr3 170858390 170858527 -47178631 - L1ME3A LINE L1 -678 5492 5359 1335 174 69 36 chr3 170858584 170858860 -47178298 - AluJo SINE Alu -27 285 1 2421 88 7 3 chr3 170859132 170859468 -47177690 - AluSc SINE Alu 0 337 1 21 36 0 0 chr3 170859468 170859496 -47177662 + AT_rich Low_complexity Low_complexity 1 28 0 1859 235 39 76 chr3 170859505 170860139 -47177019 - LTR9 LTR ERV1 0 612 2 403 234 58 78 chr3 170860139 170860344 -47176814 - L1MC4 LINE L1 -10 8032 7832 5712 237 15 69 chr3 170860446 170861242 -47175916 + L1M2 LINE L1 2819 3656 -3192 2180 132 0 0 chr3 170861242 170861545 -47175613 - AluSg SINE Alu -7 303 1 5712 237 15 69 chr3 170861545 170862747 -47174411 + L1M2 LINE L1 3656 4705 -2143 817 181 22 16 chr3 170862755 170862937 -47174221 + AluSp SINE Alu 1 183 -130 462 131 0 0 chr3 170863160 170863221 -47173937 - AluS SINE Alu -256 62 2 219 299 137 64 chr3 170863250 170863454 -47173704 - L2 LINE L2 -1132 2182 1964 2112 99 7 0 chr3 170863531 170863837 -47173321 - AluSq SINE Alu 0 308 1 230 201 29 29 chr3 170864191 170864260 -47172898 + MIR SINE MIR 99 166 -67 447 232 56 154 chr3 170864963 170865269 -47171889 - L1M2 LINE L1 -5898 951 676 300 289 169 29 chr3 170865800 170866073 -47171085 - L1M2 LINE L1 -5654 1195 885 270 247 93 10 chr3 170867429 170867526 -47169632 - MER104 DNA Tc2 -45 135 31 26 52 0 17 chr3 170867819 170867857 -47169301 + AT_rich Low_complexity Low_complexity 1 39 -18 1624 147 93 0 chr3 170867857 170868136 -47169022 - AluJo SINE Alu -7 305 1 26 52 0 17 chr3 170868136 170868155 -47169003 + AT_rich Low_complexity Low_complexity 39 57 0 1459 110 0 48 chr3 170868155 170868210 -47168948 - L1PB1 LINE L1 -1 6150 6094 2503 81 0 3 chr3 170868210 170868520 -47168638 - AluY SINE Alu -2 309 1 1459 110 0 48 chr3 170868520 170868692 -47168466 - L1PB1 LINE L1 -57 6094 5934 2090 124 3 34 chr3 170869482 170869804 -47167354 - AluSx SINE Alu 0 312 1 1991 147 3 0 chr3 170869816 170870116 -47167042 - AluSx SINE Alu -11 301 1 22 0 0 0 chr3 170870566 170870588 -47166570 + AT_rich Low_complexity Low_complexity 1 22 0 229 217 0 0 chr3 170870987 170871033 -47166125 - L1MC4 LINE L1 -432 7610 7565 21 0 0 0 chr3 170871204 170871225 -47165933 + AT_rich Low_complexity Low_complexity 1 21 0 2394 41 7 7 chr3 170871231 170871523 -47165635 - AluY SINE Alu -19 292 1 2414 88 0 3 chr3 170871527 170871832 -47165326 - AluSq SINE Alu -9 304 1 1815 204 95 68 chr3 170871908 170872478 -47164680 - MER77 LTR ERV1 -4 601 62 1773 171 7 0 chr3 170872580 170872878 -47164280 + AluJo SINE Alu 1 300 -12 1009 239 93 83 chr3 170872892 170873358 -47163800 - L1MC4 LINE L1 -32 8010 7537 2424 69 0 3 chr3 170873358 170873662 -47163496 + AluY SINE Alu 1 303 -8 1009 239 93 83 chr3 170873662 170873710 -47163448 - L1MC4 LINE L1 -505 7537 7491 1486 28 6 0 chr3 170873960 170874137 -47163021 - L1PBa LINE L1 -4270 2593 2416 679 72 0 0 chr3 170874137 170874220 -47162938 - L1PBa LINE L1 -4383 2480 2398 719 267 164 35 chr3 170874222 170874423 -47162735 - L1MEc LINE L1 -3694 2435 2261 2157 110 28 0 chr3 170874423 170874714 -47162444 - AluSx SINE Alu -13 299 1 719 267 164 35 chr3 170874714 170875640 -47161518 - L1MEc LINE L1 -3868 2261 1169 2022 102 0 83 chr3 170875669 170875994 -47161164 - AluSg SINE Alu -12 298 1 23 33 0 0 chr3 170876058 170876088 -47161070 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr3 170876123 170876148 -47161010 + AT_rich Low_complexity Low_complexity 1 25 0 2365 94 0 0 chr3 170876366 170876663 -47160495 - AluSx SINE Alu -15 297 1 239 376 0 0 chr3 170876695 170876780 -47160378 - L1MEc LINE L1 -5573 546 462 400 307 135 10 chr3 170876875 170877178 -47159980 - L1MEc LINE L1 -5732 387 47 840 309 9 0 chr3 170877310 170877540 -47159618 - MIR SINE MIR 0 262 31 187 254 34 34 chr3 170877640 170877699 -47159459 - MIR3 SINE MIR -135 73 15 1592 181 13 16 chr3 170878616 170878919 -47158239 + AluJb SINE Alu 1 302 -10 2074 128 10 0 chr3 170879258 170879556 -47157602 - AluSx SINE Alu -11 301 1 260 133 22 0 chr3 170879582 170879627 -47157531 + L1ME LINE L1 5772 5817 -304 1370 169 19 30 chr3 170879664 170879930 -47157228 + L1M2 LINE L1 82 344 -6686 3429 211 23 50 chr3 170879930 170880676 -47156482 + L1M2 LINE L1 1229 1993 -5113 1741 192 0 13 chr3 170880676 170880984 -47156174 + AluJb SINE Alu 1 304 -8 3429 211 23 50 chr3 170880984 170881378 -47155780 + L1M2 LINE L1 1993 5237 -1869 973 53 0 0 chr3 170881381 170881494 -47155664 + AluY SINE Alu 1 113 -198 5852 149 38 22 chr3 170881503 170881572 -47155586 + L1M2 LINE L1 5215 5281 -1970 2137 151 0 0 chr3 170881572 170881877 -47155281 + AluSx SINE Alu 1 305 -7 5852 149 38 22 chr3 170881877 170882906 -47154252 + L1M2 LINE L1 5281 6292 -959 420 20 0 0 chr3 170882906 170882955 -47154203 + (TA)n Simple_repeat Simple_repeat 2 50 0 5852 149 38 22 chr3 170882955 170883153 -47154005 + L1M2 LINE L1 6292 6485 -766 1802 178 0 3 chr3 170883153 170883445 -47153713 + AluJb SINE Alu 1 291 -21 5852 149 38 22 chr3 170883445 170883661 -47153497 + L1M2 LINE L1 6485 6753 -498 2143 57 0 4 chr3 170883674 170883937 -47153221 - AluY SINE Alu 0 311 50 886 128 123 0 chr3 170884046 170884289 -47152869 + AluSq SINE Alu 36 308 -5 342 281 70 62 chr3 170884360 170884488 -47152670 + MIR SINE MIR 33 161 -101 2202 123 3 0 chr3 170884488 170884796 -47152362 + AluSx SINE Alu 1 309 -3 298 331 100 21 chr3 170884853 170885124 -47152034 - L2 LINE L2 -236 3036 2748 2062 138 0 10 chr3 170885180 170885485 -47151673 + AluSx SINE Alu 2 303 -9 1136 129 0 35 chr3 170885485 170885656 -47151502 + AluSg/x SINE Alu 134 298 -14 555 229 57 18 chr3 170885663 170885995 -47151163 - Charlie2a DNA MER1_type -20 2842 730 423 184 35 0 chr3 170886011 170886098 -47151060 - Charlie2a DNA MER1_type -2367 415 326 573 117 0 32 chr3 170886148 170886242 -47150916 + L1MEc LINE L1 35 125 -6271 2198 123 3 0 chr3 170886243 170886545 -47150613 + AluSq SINE Alu 1 303 -10 786 227 92 5 chr3 170886546 170886753 -47150405 + L1M4 LINE L1 3845 4069 -2077 1269 97 0 23 chr3 170886767 170886942 -47150216 + AluSq SINE Alu 135 305 -8 217 236 113 47 chr3 170886963 170887069 -47150089 - L2 LINE L2 -943 2371 2259 1001 186 0 0 chr3 170887261 170887428 -47149730 - AluJb SINE Alu -9 303 137 1470 162 57 34 chr3 170888293 170888434 -47148724 + AluJo SINE Alu 2 138 -174 2151 96 0 17 chr3 170888434 170888735 -47148423 + AluSg SINE Alu 1 296 -14 1470 162 57 34 chr3 170888735 170888889 -47148269 + AluJo SINE Alu 138 304 -8 210 253 154 22 chr3 170888897 170888988 -47148170 + MIR SINE MIR 37 139 -69 303 228 101 67 chr3 170889630 170889779 -47147379 + MIR SINE MIR 26 179 -83 2331 107 13 0 chr3 170890061 170890369 -47146789 + AluSx SINE Alu 1 312 0 340 236 0 0 chr3 170890399 170890471 -47146687 + MER116 DNA Mariner 1 72 -8 840 156 0 16 chr3 170890501 170890629 -47146529 + FLAM_C SINE Alu 1 126 -7 323 317 61 27 chr3 170890701 170890888 -47146270 + MIR3 SINE MIR 32 223 -2 180 0 0 0 chr3 170891617 170891637 -47145521 + (T)n Simple_repeat Simple_repeat 1 20 0 220 245 0 0 chr3 170892108 170892157 -47145001 + L2 LINE L2 3265 3313 0 21 0 0 0 chr3 170892277 170892298 -47144860 + AT_rich Low_complexity Low_complexity 1 21 0 2451 72 0 0 chr3 170893183 170893489 -47143669 + AluSx SINE Alu 2 307 -5 193 216 91 102 chr3 170896179 170896267 -47140891 - MIR SINE MIR -104 104 18 180 0 0 0 chr3 170896591 170896611 -47140547 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 216 0 0 0 chr3 170896747 170896771 -47140387 + (A)n Simple_repeat Simple_repeat 1 24 0 282 267 0 0 chr3 170898339 170898399 -47138759 - L2 LINE L2 -6 3307 3248 387 296 73 119 chr3 170898469 170898623 -47138535 - MLT1K LTR MaLR -3 585 425 2467 166 87 11 chr3 170898623 170899074 -47138084 - MER31A LTR ERV1 0 485 1 387 296 73 119 chr3 170899074 170899523 -47137635 - MLT1K LTR MaLR -163 425 10 2411 78 3 0 chr3 170899528 170899824 -47137334 + AluSg SINE Alu 1 297 -13 221 303 34 11 chr3 170900335 170900424 -47136734 + MIR SINE MIR 172 262 0 234 0 0 0 chr3 170900453 170900479 -47136679 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1932 102 30 0 chr3 170900489 170900754 -47136404 - AluSq SINE Alu -29 284 12 2169 103 0 3 chr3 170900802 170901114 -47136044 - AluSx SINE Alu 0 311 1 714 131 0 19 chr3 170901124 170901231 -47135927 - FLAM_A SINE Alu -19 123 19 2333 73 7 17 chr3 170901360 170901660 -47135498 + AluSq SINE Alu 1 297 -16 206 291 0 38 chr3 170902946 170903025 -47134133 - L2 LINE L2 0 3313 3238 2130 134 10 0 chr3 170903340 170903647 -47133511 + AluSg SINE Alu 1 310 0 784 223 55 5 chr3 170903766 170903968 -47133190 + MER112 DNA MER1_type 43 254 -6 2117 121 0 13 chr3 170903972 170904270 -47132888 + AluSg SINE Alu 1 294 -16 1589 178 10 45 chr3 170904278 170904587 -47132571 + AluJb SINE Alu 1 298 -14 24 32 0 0 chr3 170905304 170905335 -47131823 + AT_rich Low_complexity Low_complexity 1 31 0 1907 124 76 0 chr3 170905894 170906184 -47130974 + AluSx SINE Alu 1 312 0 2376 96 0 6 chr3 170906206 170906520 -47130638 - AluSx SINE Alu 0 312 1 1470 188 12 59 chr3 170907460 170907662 -47129496 + AluJo SINE Alu 1 184 -128 1453 197 33 53 chr3 170907662 170907962 -47129196 - AluJb SINE Alu -18 294 1 1470 188 12 59 chr3 170907962 170908083 -47129075 + AluJo SINE Alu 184 309 -3 2423 87 0 7 chr3 170908611 170908911 -47128247 + AluSx SINE Alu 1 298 -14 1701 195 3 0 chr3 170911104 170911396 -47125762 - AluJb SINE Alu -19 293 1 2019 128 7 10 chr3 170911403 170911708 -47125450 - AluSx SINE Alu -8 304 1 252 150 0 0 chr3 170912528 170912568 -47124590 - L2 LINE L2 -8 3305 3266 2319 48 0 34 chr3 170912588 170912917 -47124241 + AluY SINE Alu 1 319 0 316 250 17 17 chr3 170913175 170913295 -47123863 + (TA)n Simple_repeat Simple_repeat 2 121 0 256 289 0 13 chr3 170913484 170913560 -47123598 + MER103 DNA DNA 1 75 -91 351 297 27 9 chr3 170913568 170913679 -47123479 + L2 LINE L2 3192 3304 -9 2160 101 3 7 chr3 170913681 170913967 -47123191 + AluSx SINE Alu 1 285 -27 2228 125 3 0 chr3 170914097 170914401 -47122757 - AluSx SINE Alu -7 305 1 753 260 119 13 chr3 170914401 170914636 -47122522 - MLT1B LTR MaLR -130 260 1 1328 111 254 8 chr3 170915788 170916032 -47121126 - AluSg1 SINE Alu -5 304 1 2010 138 0 3 chr3 170916422 170916732 -47120426 + AluSx SINE Alu 1 312 0 1111 242 25 22 chr3 170916734 170917011 -47120147 - LTR43 LTR ERV1 -194 408 131 185 83 28 0 chr3 170917101 170917137 -47120021 + (TTTTTG)n Simple_repeat Simple_repeat 1 37 0 320 145 14 29 chr3 170917177 170917246 -47119912 - LTR60 LTR ERV1 -518 68 1 2256 114 3 0 chr3 170917458 170917757 -47119401 - AluSx SINE Alu -11 301 2 2149 121 0 3 chr3 170918329 170918626 -47118532 + AluSx SINE Alu 1 296 -16 1494 200 131 63 chr3 170918844 170919084 -47118074 - MER39 LTR ERV1 0 707 485 2190 113 7 0 chr3 170919084 170919375 -47117783 + AluSx SINE Alu 1 293 -19 1494 200 131 63 chr3 170919375 170919649 -47117509 - MER39 LTR ERV1 -222 485 5 2221 109 0 7 chr3 170920560 170920862 -47116296 + AluSc SINE Alu 1 300 -9 466 265 34 0 chr3 170921122 170921239 -47115919 - MLT1L LTR MaLR -74 541 421 494 260 14 14 chr3 170921243 170921389 -47115769 - AluSg/x SINE Alu -1 311 166 1616 134 0 4 chr3 170921489 170921757 -47115401 + AluSx SINE Alu 48 314 0 312 301 112 10 chr3 170921898 170922094 -47115064 - MIR SINE MIR -18 244 29 2154 113 0 16 chr3 170922411 170922720 -47114438 - AluSg SINE Alu -6 304 1 2274 99 3 3 chr3 170924108 170924410 -47112748 - AluSp SINE Alu -11 302 1 1162 123 6 0 chr3 170924410 170924580 -47112578 - AluSq SINE Alu -19 294 124 2068 116 3 23 chr3 170924825 170925126 -47112032 + AluSq SINE Alu 1 295 -18 2274 99 3 3 chr3 170925126 170925427 -47111731 + AluSp SINE Alu 1 302 -11 2142 117 0 16 chr3 170926815 170927124 -47110034 + AluSg SINE Alu 1 304 -6 312 301 112 10 chr3 170927441 170927637 -47109521 + MIR SINE MIR 29 244 -18 2083 123 0 0 chr3 170927778 170928092 -47109066 - AluSx SINE Alu 0 314 1 889 209 0 0 chr3 170928281 170928434 -47108724 - FRAM SINE Alu -10 156 4 2141 119 0 3 chr3 170928915 170929200 -47107958 + AluSx SINE Alu 5 288 -24 2191 92 7 0 chr3 170929218 170929500 -47107658 + AluSc SINE Alu 1 284 -25 33 94 0 0 chr3 170929500 170929596 -47107562 + AT_rich Low_complexity Low_complexity 1 96 0 2227 135 0 0 chr3 170930120 170930424 -47106734 - AluSx SINE Alu -8 304 1 258 275 37 18 chr3 170930643 170930752 -47106406 - L1ME LINE L1 -509 5612 5502 26 30 0 0 chr3 170930982 170931015 -47106143 + AT_rich Low_complexity Low_complexity 1 33 0 332 200 0 57 chr3 170931068 170931138 -47106020 + AluJ/FRAM SINE Alu 228 293 -9 2216 121 6 16 chr3 170931138 170931275 -47105883 + AluSx SINE Alu 1 138 -174 2301 114 3 0 chr3 170931275 170931583 -47105575 + AluSp SINE Alu 1 309 -4 2216 121 6 16 chr3 170931583 170931760 -47105398 + AluSx SINE Alu 138 312 0 2424 211 70 4 chr3 170931964 170932496 -47104662 + LTR28 LTR ERV1 1 567 -453 226 180 99 117 chr3 170932555 170932666 -47104492 + LTR27 LTR ERV1 526 634 -2 1832 130 30 47 chr3 170932912 170933211 -47103947 - AluSq SINE Alu -12 301 8 243 0 0 0 chr3 170933211 170933238 -47103920 + (TG)n Simple_repeat Simple_repeat 2 28 0 342 0 0 0 chr3 170933262 170933300 -47103858 + (TG)n Simple_repeat Simple_repeat 1 38 0 239 167 0 0 chr3 170933300 170933336 -47103822 - Alu SINE Alu -18 284 249 191 36 36 0 chr3 170933340 170933368 -47103790 + (TG)n Simple_repeat Simple_repeat 1 29 0 1621 184 0 21 chr3 170933368 170933517 -47103641 - AluJb SINE Alu -30 282 140 1523 189 45 3 chr3 170933517 170933803 -47103355 - AluSg SINE Alu -4 306 9 1621 184 0 21 chr3 170933803 170933941 -47103217 - AluJb SINE Alu -172 140 1 1504 178 18 18 chr3 170934167 170934453 -47102705 + AluJo SINE Alu 1 286 -26 203 278 174 35 chr3 170934864 170934979 -47102179 + L2 LINE L2 3182 3312 -1 360 0 0 0 chr3 170935017 170935057 -47102101 + (TG)n Simple_repeat Simple_repeat 1 40 0 210 241 207 35 chr3 170935902 170935989 -47101169 - MER91C DNA MER1_type -21 119 18 427 326 102 68 chr3 170936361 170936772 -47100386 - L2 LINE L2 0 3272 2848 1615 114 26 13 chr3 170936802 170937029 -47100129 - MER30 DNA MER1_type 0 230 1 572 260 122 52 chr3 170937092 170937419 -47099739 + L2 LINE L2 2964 3313 0 2303 109 6 0 chr3 170937452 170937763 -47099395 + AluSp SINE Alu 1 313 0 1493 157 105 21 chr3 170938746 170939032 -47098126 + AluJo SINE Alu 1 310 -2 409 220 89 62 chr3 170939106 170939280 -47097878 + L1MC5 LINE L1 7411 7596 -365 2360 77 13 7 chr3 170939280 170939580 -47097578 + AluSp SINE Alu 1 302 -11 409 220 89 62 chr3 170939580 170939664 -47097494 + L1MC5 LINE L1 7596 7676 -285 1227 244 100 64 chr3 170939670 170939692 -47097466 + L1MC4 LINE L1 7394 7414 -628 1482 166 17 0 chr3 170939692 170939933 -47097225 - AluJo SINE Alu -19 293 49 1227 244 100 64 chr3 170939933 170940114 -47097044 + L1MC4 LINE L1 7414 7587 -455 2197 116 24 0 chr3 170940114 170940408 -47096750 + AluSc SINE Alu 1 301 -8 1227 244 100 64 chr3 170940408 170940765 -47096393 + L1MC4 LINE L1 7587 7975 -67 401 318 120 103 chr3 170940919 170941541 -47095617 + L3 LINE CR1 453 1092 -485 2314 107 0 0 chr3 170941541 170941839 -47095319 - AluSx SINE Alu -14 298 1 401 318 120 103 chr3 170941839 170942019 -47095139 + L3 LINE CR1 1092 1268 -309 203 225 0 25 chr3 170942139 170942179 -47094979 - L2 LINE L2 -93 3179 3141 440 326 79 3 chr3 170942548 170942751 -47094407 + MIR SINE MIR 1 223 -39 24 0 0 0 chr3 170942767 170942791 -47094367 + AT_rich Low_complexity Low_complexity 1 24 0 369 280 153 68 chr3 170942965 170943234 -47093924 + MLT1J LTR MaLR 110 418 -93 2318 22 0 32 chr3 170943234 170943512 -47093646 - AluYb8 SINE Alu -11 307 39 369 280 153 68 chr3 170943512 170943596 -47093562 + MLT1J LTR MaLR 418 493 -18 2390 102 0 0 chr3 170943732 170944035 -47093123 + AluY SINE Alu 1 303 -8 1788 101 4 0 chr3 170944040 170944278 -47092880 + AluY SINE Alu 1 239 -72 430 130 6 3 chr3 170944278 170944432 -47092726 + AluSq SINE Alu 105 302 0 4284 142 26 11 chr3 170944432 170945157 -47092001 + L1M4c LINE L1 1163 1898 -4486 714 124 0 0 chr3 170945157 170945262 -47091896 + Tigger4(Zombi) DNA MER2_type 1 105 -2626 499 175 0 0 chr3 170945270 170945350 -47091808 + Tigger4(Zombi) DNA MER2_type 2220 2299 -432 340 114 0 0 chr3 170945349 170945393 -47091765 + Tigger4(Zombi) DNA MER2_type 2686 2729 -2 * 2296 105 0 0 chr3 170945402 170945698 -47091460 - AluSx SINE Alu -15 297 2 2045 134 3 3 chr3 170945712 170946011 -47091147 - AluSx SINE Alu -13 299 1 4018 214 38 107 chr3 170946013 170946174 -47090984 + L1M4c LINE L1 1897 2068 -4314 2350 83 7 0 chr3 170946174 170946474 -47090684 - AluSp SINE Alu -11 302 1 4018 214 38 107 chr3 170946474 170946702 -47090456 + L1M4c LINE L1 2068 2310 -4072 1755 142 52 0 chr3 170946702 170947019 -47090139 + AluSx SINE Alu 1 331 0 4018 214 38 107 chr3 170947019 170948003 -47089155 + L1M4c LINE L1 2310 3360 -3022 1574 167 4 8 chr3 170948003 170948260 -47088898 + AluJb SINE Alu 3 258 -54 4018 214 38 107 chr3 170948260 170948787 -47088371 + L1M4c LINE L1 3360 3922 -2460 2274 108 0 13 chr3 170948787 170949092 -47088066 + AluSx SINE Alu 1 301 -11 4018 214 38 107 chr3 170949092 170949448 -47087710 + L1M4c LINE L1 3922 4301 -2081 1669 157 13 52 chr3 170949448 170949590 -47087568 - AluJo SINE Alu -19 293 168 2176 109 3 10 chr3 170949590 170949894 -47087264 - AluSx SINE Alu -10 302 1 1669 157 13 52 chr3 170949894 170950056 -47087102 - AluJo SINE Alu -144 168 1 4018 214 38 107 chr3 170950056 170950152 -47087006 + L1M4c LINE L1 4301 4071 -2311 2644 51 0 0 chr3 170950152 170950463 -47086695 + AluY SINE Alu 1 311 0 4018 214 38 107 chr3 170950463 170950575 -47086583 + L1M4c LINE L1 4070 4188 -2194 2268 193 32 42 chr3 170950719 170950817 -47086341 + L1MB3 LINE L1 5520 5617 -566 1754 130 18 18 chr3 170950817 170951101 -47086057 + AluSx SINE Alu 24 307 -5 2268 193 32 42 chr3 170951101 170951506 -47085652 + L1MB3 LINE L1 5617 6018 -165 2237 94 3 3 chr3 170951506 170951815 -47085343 - AluSq SINE Alu 0 309 1 231 217 0 0 chr3 170952592 170952652 -47084506 + (TA)n Simple_repeat Simple_repeat 1 60 0 2426 91 0 0 chr3 170953048 170953355 -47083803 + AluY SINE Alu 1 307 -4 2240 105 0 3 chr3 170953364 170953658 -47083500 + AluSx SINE Alu 1 293 -19 2280 100 3 0 chr3 170953660 170953961 -47083197 + AluSq SINE Alu 1 302 -11 354 283 0 11 chr3 170954159 170954251 -47082907 - L2 LINE L2 0 3313 3223 935 252 123 66 chr3 170954295 170954839 -47082319 + L2 LINE L2 1942 2516 -798 1581 178 10 7 chr3 170954933 170955226 -47081932 + AluJo SINE Alu 1 294 -18 1103 168 36 44 chr3 170955230 170955504 -47081654 + AluJo SINE Alu 38 309 -3 2208 122 0 0 chr3 170956601 170956897 -47080261 + AluSx SINE Alu 1 296 -16 623 184 88 0 chr3 170957020 170957145 -47080013 + MER3 DNA MER1_type 73 208 -1 276 196 0 0 chr3 170957105 170957151 -47080007 - MER3 DNA MER1_type -121 88 43 * 2217 112 0 3 chr3 170957301 170957605 -47079553 + AluY SINE Alu 1 303 -8 741 222 51 56 chr3 170957639 170957873 -47079285 - MIR SINE MIR -24 238 6 2252 107 0 10 chr3 170958597 170958897 -47078261 + AluSp SINE Alu 1 297 -16 751 344 47 30 chr3 170959093 170959622 -47077536 + L2 LINE L2 606 1143 -2171 326 122 0 95 chr3 170959642 170959672 -47077486 - Charlie8 DNA MER1_type -172 169 138 2346 94 0 0 chr3 170959672 170959981 -47077177 + AluSp SINE Alu 1 309 -4 326 122 0 95 chr3 170959981 170960024 -47077134 - Charlie8 DNA MER1_type -203 138 103 1413 113 15 5 chr3 170960129 170960356 -47076802 + AluSq SINE Alu 79 307 0 622 307 69 87 chr3 170960384 170960896 -47076262 + L2 LINE L2 2769 3270 -2 490 288 45 35 chr3 170961024 170961370 -47075788 + L1MEc LINE L1 1748 2040 -4177 2253 111 0 0 chr3 170961479 170961786 -47075372 + AluSg1 SINE Alu 1 307 -2 1483 185 24 112 chr3 170962016 170962514 -47074644 + MER65C LTR ERV1 1 454 -7 2235 88 0 30 chr3 170962692 170962997 -47074161 - AluSq SINE Alu -17 296 1 337 242 0 0 chr3 170963648 170963710 -47073448 - AluJ/FLAM SINE Alu -240 62 1 2587 27 10 0 chr3 170963714 170964012 -47073146 - AluYa5 SINE Alu -10 301 1 260 305 57 50 chr3 170964122 170964478 -47072680 + HAL1b LINE L1 311 396 -952 185 0 0 39 chr3 170964640 170964666 -47072492 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 19232 137 42 22 chr3 170965148 170965192 -47071966 - L1M1 LINE L1 -4347 3218 3176 2236 107 0 16 chr3 170965192 170965509 -47071649 - AluSx SINE Alu 0 312 1 19232 137 42 22 chr3 170965509 170968600 -47068558 - L1M1 LINE L1 -4389 3176 19 2678 222 31 45 chr3 170968609 170968846 -47068312 - L1 LINE L1 -1007 5139 4900 2064 128 0 3 chr3 170968846 170969135 -47068023 - AluSx SINE Alu -4 308 21 2678 222 31 45 chr3 170969135 170969672 -47067486 - L1 LINE L1 -1246 4900 4376 2438 84 0 3 chr3 170969673 170969972 -47067186 - AluSx SINE Alu -14 298 1 354 367 105 46 chr3 170969986 170970291 -47066867 + L2 LINE L2 2940 3262 -10 * 469 252 25 34 chr3 170970265 170970384 -47066774 - L2 LINE L2 -2 3311 3194 242 196 0 54 chr3 170970495 170970551 -47066607 - L1M4c LINE L1 -4320 2064 2012 2350 83 7 0 chr3 170970551 170970851 -47066307 + AluSp SINE Alu 1 302 -11 579 116 13 56 chr3 170970862 170971012 -47066146 - L1M4c LINE L1 -4359 2025 1824 2045 134 3 3 chr3 170971014 170971313 -47065845 + AluSx SINE Alu 1 299 -13 2061 142 3 6 chr3 170971328 170971639 -47065519 + AluSx SINE Alu 3 312 0 2324 85 3 3 chr3 170972250 170972545 -47064613 + AluSp SINE Alu 1 295 -18 1200 81 0 7 chr3 170972700 170972848 -47064310 + AluSq/x SINE Alu 1 147 -165 247 130 0 0 chr3 170972852 170972898 -47064260 + Alu SINE Alu 256 301 0 2127 143 3 0 chr3 170973124 170973432 -47063726 + AluSg SINE Alu 1 309 -1 1742 235 130 42 chr3 170974775 170975485 -47061673 + L1MC4 LINE L1 7261 8032 -10 1843 235 39 76 chr3 170975485 170976119 -47061039 + LTR9 LTR ERV1 2 612 0 21 36 0 0 chr3 170976128 170976156 -47061002 + AT_rich Low_complexity Low_complexity 1 28 0 2429 93 0 3 chr3 170976156 170976496 -47060662 + AluSc SINE Alu 1 339 0 1335 174 69 36 chr3 170976768 170977044 -47060114 + AluJo SINE Alu 1 285 -27 2203 210 62 37 chr3 170977101 170977234 -47059924 + L1ME3A LINE L1 5359 5487 -683 2460 64 14 0 chr3 170977234 170977530 -47059628 + AluY SINE Alu 3 302 -9 2203 210 62 37 chr3 170977530 170977996 -47059162 + L1ME3A LINE L1 5487 5973 -197 324 200 17 0 chr3 170978064 170978124 -47059034 + L1ME LINE L1 5524 5584 -537 2165 92 7 10 chr3 170978174 170978468 -47058690 + AluSx SINE Alu 1 293 -19 21 0 0 0 chr3 170978474 170978495 -47058663 + AT_rich Low_complexity Low_complexity 1 21 0 229 217 0 0 chr3 170978666 170978712 -47058446 + L1MC4 LINE L1 7565 7610 -432 562 174 0 0 chr3 170978889 170978975 -47058183 - AluS SINE Alu -225 87 2 2237 98 3 16 chr3 170979048 170979353 -47057805 - AluSp SINE Alu -11 302 2 195 359 23 38 chr3 170979560 170979691 -47057467 + L3 LINE CR1 852 980 -597 262 327 89 73 chr3 170979722 170979844 -47057314 + L3 LINE CR1 961 1080 -497 2342 104 0 0 chr3 170979844 170980142 -47057016 - AluSx SINE Alu -14 298 1 262 327 89 73 chr3 170980142 170980322 -47056836 + L3 LINE CR1 1080 1268 -309 203 225 0 25 chr3 170980442 170980482 -47056676 - L2 LINE L2 -93 3179 3141 440 326 79 3 chr3 170980851 170981054 -47056104 + MIR SINE MIR 1 223 -39 24 0 0 0 chr3 170981070 170981094 -47056064 + AT_rich Low_complexity Low_complexity 1 24 0 408 279 149 68 chr3 170981267 170981537 -47055621 + MLT1J LTR MaLR 110 417 -94 2316 22 0 32 chr3 170981537 170981815 -47055343 - AluYb8 SINE Alu -11 307 39 408 279 149 68 chr3 170981815 170981899 -47055259 + MLT1J LTR MaLR 417 493 -18 2370 101 0 0 chr3 170982035 170982341 -47054817 + AluSc SINE Alu 1 306 -3 1017 100 8 0 chr3 170982347 170982477 -47054681 + AluSg SINE Alu 1 131 -179 2366 79 14 0 chr3 170982481 170982773 -47054385 + AluSg SINE Alu 1 296 -14 1032 235 101 55 chr3 170982773 170983067 -47054091 + MLT1G3 LTR MaLR 4 283 -284 1987 145 78 20 chr3 170983067 170983412 -47053746 + MLT1A1 LTR MaLR 1 365 0 1032 235 101 55 chr3 170983412 170983548 -47053610 + MLT1G3 LTR MaLR 283 411 -156 1871 108 97 0 chr3 170983548 170983816 -47053342 + AluSq SINE Alu 1 294 -19 1032 235 101 55 chr3 170983816 170983889 -47053269 + MLT1G3 LTR MaLR 411 559 -8 707 182 25 0 chr3 170984227 170984348 -47052810 + MER5B DNA MER1_type 1 124 -54 321 226 80 72 chr3 170984526 170984677 -47052481 - MIR3 SINE MIR -28 180 31 4289 165 45 25 chr3 170985021 170985737 -47051421 - L1MC1 LINE L1 -270 6063 5363 270 81 0 0 chr3 170985737 170985774 -47051384 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 1703 193 0 3 chr3 170985774 170986059 -47051099 - AluJb SINE Alu -28 284 1 4289 165 45 25 chr3 170986059 170986112 -47051046 - L1MC1 LINE L1 -970 5363 5313 198 0 0 0 chr3 170986112 170986134 -47051024 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 1801 167 0 7 chr3 170986137 170986431 -47050727 - AluSx SINE Alu -20 292 1 4289 165 45 25 chr3 170986431 170986585 -47050573 - L1MC1 LINE L1 -1021 5312 5131 2296 104 0 7 chr3 170986693 170986992 -47050166 + AluSx SINE Alu 1 297 -15 864 296 102 57 chr3 170987731 170988258 -47048900 + MLT1K LTR MaLR 36 585 -3 249 303 17 59 chr3 170988267 170988386 -47048772 + MIR3 SINE MIR 5 118 -90 835 195 0 0 chr3 170988731 170988880 -47048278 + AluSg/x SINE Alu 130 278 -32 243 0 0 0 chr3 170988882 170988909 -47048249 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 434 322 17 40 chr3 170989811 170989988 -47047170 + MIR3 SINE MIR 31 203 -5 21 0 0 0 chr3 170990036 170990057 -47047101 + AT_rich Low_complexity Low_complexity 1 21 0 262 331 139 0 chr3 170990911 170991077 -47046081 - L1M4 LINE L1 -2368 3778 3590 975 300 117 14 chr3 170991085 170991449 -47045709 - L1M4 LINE L1 -2606 3540 3215 1826 171 0 10 chr3 170991449 170991747 -47045411 - AluJb SINE Alu -17 295 1 1830 168 30 7 chr3 170991749 170992046 -47045112 - AluJo SINE Alu -8 304 1 975 300 117 14 chr3 170992046 170992521 -47044637 - L1M4 LINE L1 -2931 3215 2790 2077 154 67 5 chr3 170992521 170992924 -47044234 - MSTA LTR MaLR 0 428 1 9378 162 10 14 chr3 170992924 170994582 -47042576 - MSTA-int LTR MaLR 0 1651 1 1775 178 116 13 chr3 170994582 170994970 -47042188 - MSTA LTR MaLR 0 428 1 975 300 117 14 chr3 170994970 170995118 -47042040 - L1M4 LINE L1 -3355 2791 2445 2064 84 3 17 chr3 170995159 170995455 -47041703 - L1PB1 LINE L1 -2 6149 5858 1859 14 0 0 chr3 170995455 170995665 -47041493 + L1PA5 LINE L1 5938 6148 -6 5700 159 8 12 chr3 170995842 170995944 -47041214 - L1PB1 LINE L1 -278 5873 5772 2145 120 28 0 chr3 170995944 170996235 -47040923 - AluSg SINE Alu -11 299 1 5700 159 8 12 chr3 170996235 170997907 -47039251 - L1PB1 LINE L1 -379 5772 4104 2137 128 3 0 chr3 170997907 170998203 -47038955 + AluSx SINE Alu 1 297 -15 5700 159 8 12 chr3 170998203 170998268 -47038890 - L1PB1 LINE L1 -2047 4104 4040 2185 128 0 0 chr3 170998571 170998867 -47038291 + AluSx SINE Alu 1 296 -16 2288 83 0 10 chr3 170999109 170999432 -47037726 + AluSq SINE Alu 2 321 0 968 189 12 0 chr3 170999781 170999945 -47037213 - FAM SINE Alu -9 166 1 250 292 38 87 chr3 171000005 171000047 -47037111 + MER102a DNA MER1_type 126 168 -1249 2290 100 0 0 chr3 171000047 171000346 -47036812 + AluY SINE Alu 2 300 -11 250 292 38 87 chr3 171000346 171000488 -47036670 + MER102a DNA MER1_type 168 301 -29 1986 151 0 6 chr3 171000549 171000860 -47036298 - AluSx SINE Alu -3 309 1 2115 120 0 0 chr3 171001271 171001599 -47035559 + AluSx SINE Alu 1 328 0 297 0 0 0 chr3 171002152 171002185 -47034973 + (TA)n Simple_repeat Simple_repeat 2 34 0 2143 121 13 10 chr3 171002185 171002492 -47034666 - AluSx SINE Alu -2 310 3 21 82 0 0 chr3 171002600 171002649 -47034509 + AT_rich Low_complexity Low_complexity 1 49 0 997 174 0 0 chr3 171003052 171003207 -47033951 - AluJb SINE Alu -11 301 147 223 316 40 0 chr3 171003904 171003980 -47033178 - MIR SINE MIR -70 192 114 2177 107 3 7 chr3 171004181 171004481 -47032677 - AluSq SINE Alu -14 299 1 2278 93 3 7 chr3 171004751 171005053 -47032105 + AluSg SINE Alu 1 301 -9 1127 243 69 28 chr3 171005193 171005626 -47031532 + MER41E-int LTR ERV1 6226 6676 0 2235 131 50 5 chr3 171005714 171006095 -47031063 + MER41E LTR ERV1 1 398 -114 2671 90 5 8 chr3 171006099 171006274 -47030884 - LTR8 LTR ERV1 -5 686 512 2248 98 3 0 chr3 171006274 171006571 -47030587 + AluSg SINE Alu 1 298 -12 2671 90 5 8 chr3 171006571 171006773 -47030385 - LTR8 LTR ERV1 -179 512 310 2317 114 3 0 chr3 171006800 171007107 -47030051 - AluSp SINE Alu 0 313 6 1969 133 0 9 chr3 171007133 171007448 -47029710 - LTR8 LTR ERV1 -379 312 1 731 158 8 0 chr3 171007448 171007567 -47029591 + MER41E LTR ERV1 393 512 0 2138 204 18 14 chr3 171007567 171008062 -47029096 + L1ME1 LINE L1 5613 6109 -57 572 118 0 11 chr3 171008062 171008155 -47029003 + L1PB1 LINE L1 6052 6143 -8 2079 132 0 3 chr3 171008163 171008452 -47028706 - AluSx SINE Alu -24 288 1 2008 149 3 3 chr3 171008503 171008799 -47028359 + AluSx SINE Alu 1 296 -16 1954 159 0 7 chr3 171008799 171009101 -47028057 + AluSx SINE Alu 1 300 -12 418 303 22 11 chr3 171009101 171009279 -47027879 - MLT1H LTR MaLR -347 202 23 648 203 159 32 chr3 171009550 171009801 -47027357 - MER5C DNA MER1_type 0 324 42 2081 141 0 13 chr3 171010085 171010391 -47026767 - AluSx SINE Alu -10 302 1 478 273 36 7 chr3 171011182 171011321 -47025837 + L2 LINE L2 3119 3261 -52 25 65 0 0 chr3 171011587 171011633 -47025525 + AT_rich Low_complexity Low_complexity 1 46 0 921 186 77 41 chr3 171011736 171011957 -47025201 + AluJo SINE Alu 83 311 -1 786 195 36 9 chr3 171012469 171012684 -47024474 - L1MD3 LINE L1 -15 7980 6137 669 229 16 74 chr3 171012750 171012994 -47024164 - L1MD3 LINE L1 -357 6002 5773 1244 126 0 0 chr3 171012998 171013172 -47023986 - AluSg/x SINE Alu -2 308 135 1950 143 0 0 chr3 171013402 171013675 -47023483 + AluSx SINE Alu 1 273 -39 237 296 25 25 chr3 171013686 171013767 -47023391 + MLT1G1 LTR MaLR 427 507 -88 1254 209 4 4 chr3 171014706 171014941 -47022217 - MER8 DNA MER2_type 0 239 5 5341 191 13 5 chr3 171015393 171016709 -47020449 - L1PBa LINE L1 -2738 4124 2799 369 0 0 0 chr3 171016717 171016758 -47020400 + (TG)n Simple_repeat Simple_repeat 2 42 0 898 199 9 5 chr3 171016766 171016982 -47020176 - L1PBa LINE L1 -4144 2719 2503 387 196 65 36 chr3 171017786 171017924 -47019234 - L1ME4a LINE L1 -11 6110 5969 228 306 0 0 chr3 171017998 171018060 -47019098 + MIR SINE MIR 127 188 -74 390 155 0 0 chr3 171018114 171018185 -47018973 - L1ME4a LINE L1 -265 5856 5786 1861 158 34 0 chr3 171018372 171018669 -47018489 - AluJo SINE Alu -5 307 1 298 214 76 46 chr3 171018681 171018812 -47018346 - L1MC4a LINE L1 -1862 5946 5812 1382 134 13 9 chr3 171018951 171019183 -47017975 - MER49 LTR ERV1 -690 233 1 332 114 43 57 chr3 171019295 171019365 -47017793 - L2 LINE L2 0 3313 3245 189 331 38 50 chr3 171019374 171019534 -47017624 - L2 LINE L2 -194 3078 2921 653 240 82 0 chr3 171019851 171019997 -47017161 + MER5A DNA MER1_type 31 188 -1 292 314 20 33 chr3 171020002 171020155 -47017003 - L2 LINE L2 -798 2516 2366 187 277 0 21 chr3 171020186 171020233 -47016925 - MIR SINE MIR -63 145 100 755 281 25 0 chr3 171020296 171020492 -47016666 - L1M4 LINE L1 -5995 547 347 305 250 0 121 chr3 171020508 171020640 -47016518 + MER74B LTR ERVL 76 191 -431 1597 142 73 3 chr3 171020766 171020896 -47016262 - MLT1A1 LTR MaLR -56 309 189 1947 112 87 0 chr3 171020896 171021172 -47015986 - AluSx SINE Alu -12 300 1 1597 142 73 3 chr3 171021172 171021330 -47015828 - MLT1A1 LTR MaLR -176 189 1 1893 151 56 0 chr3 171021330 171021707 -47015451 - L1MB8 LINE L1 -235 5943 5546 1023 185 11 10 chr3 171021766 171021993 -47015165 - MLT2B3 LTR ERVL -20 515 281 2230 93 13 7 chr3 171022511 171022813 -47014345 - AluSx SINE Alu 0 312 9 929 102 31 0 chr3 171022837 171022964 -47014194 + AluSg SINE Alu 1 131 -179 2027 139 0 0 chr3 171023039 171023319 -47013839 + AluSq SINE Alu 1 280 -33 180 314 0 0 chr3 171023825 171023895 -47013263 - L2 LINE L2 -2526 788 719 200 97 0 32 chr3 171024428 171024459 -47012699 + (TA)n Simple_repeat Simple_repeat 2 31 0 407 205 116 0 chr3 171024488 171024600 -47012558 + MER106A DNA MER1_type 109 233 -3 345 233 30 49 chr3 171024911 171025043 -47012115 - L1ME1 LINE L1 -141 6023 5887 1180 181 89 10 chr3 171025226 171025519 -47011639 + L1MB7 LINE L1 5823 6138 -46 2171 119 7 0 chr3 171025521 171025816 -47011342 + AluSq SINE Alu 2 298 -15 2368 101 0 0 chr3 171025933 171026240 -47010918 - AluSx SINE Alu -5 307 1 203 171 0 24 chr3 171027652 171027693 -47009465 + CT-rich Low_complexity Low_complexity 4 43 0 2335 86 3 10 chr3 171027743 171028057 -47009101 + AluSx SINE Alu 1 312 0 369 254 21 17 chr3 171028155 171028298 -47008860 - FRAM SINE Alu -18 148 36 2204 102 20 0 chr3 171028901 171029196 -47007962 + AluSx SINE Alu 1 301 -11 192 271 0 0 chr3 171029428 171029476 -47007682 + MIR SINE MIR 104 151 -111 531 170 0 43 chr3 171029962 171030056 -47007102 + AluJ/FLAM SINE Alu 1 90 -222 416 350 32 59 chr3 171030330 171030430 -47006728 + L1MEc LINE L1 748 849 -6273 2307 152 57 2 chr3 171030430 171030832 -47006326 + MSTA LTR MaLR 1 424 -4 416 350 32 59 chr3 171030832 171031105 -47006053 + L1MEc LINE L1 849 1111 -6011 283 302 82 20 chr3 171031429 171031770 -47005388 + L1MEc LINE L1 1278 1468 -4955 984 209 22 13 chr3 171031892 171032122 -47005036 + MER49 LTR ERV1 692 923 0 253 302 9 19 chr3 171033861 171033967 -47003191 - L2 LINE L2 -508 2806 2702 805 255 125 32 chr3 171033996 171034611 -47002547 + L1MC4 LINE L1 7371 8042 0 487 193 0 0 chr3 171034766 171034849 -47002309 - FLAM_A SINE Alu -17 125 43 1696 138 26 36 chr3 171035108 171035269 -47001889 - AluJo SINE Alu -10 302 144 2074 138 14 0 chr3 171035269 171035565 -47001593 - AluSq SINE Alu -13 300 1 1696 138 26 36 chr3 171035565 171035708 -47001450 - AluJo SINE Alu -168 144 1 2398 91 3 0 chr3 171036359 171036666 -47000492 + AluSp SINE Alu 1 308 -5 268 45 0 0 chr3 171036714 171036758 -47000400 + L1MA7 LINE L1 6230 6273 -18 675 164 37 8 chr3 171037196 171037330 -46999828 + L1ME2 LINE L1 6018 6155 -9 1066 202 54 43 chr3 171037556 171037928 -46999230 + L1M4 LINE L1 4954 5329 -817 1267 121 0 0 chr3 171037928 171038110 -46999048 + AluSg/x SINE Alu 127 308 -2 593 99 33 0 chr3 171038110 171038201 -46998957 + L1M LINE L1 5332 5425 -755 26 30 0 0 chr3 171038913 171038946 -46998212 + AT_rich Low_complexity Low_complexity 1 33 0 2292 96 0 10 chr3 171039079 171039380 -46997778 - AluSx SINE Alu -14 298 1 2231 117 7 0 chr3 171039400 171039707 -46997451 - AluSx SINE Alu -3 309 1 32 0 0 0 chr3 171039713 171039745 -46997413 + AT_rich Low_complexity Low_complexity 1 32 0 1729 180 0 7 chr3 171039757 171040052 -46997106 + AluSx SINE Alu 6 298 -14 2204 115 0 3 chr3 171040364 171040659 -46996499 + AluSc SINE Alu 1 294 -15 1859 128 4 18 chr3 171040680 171040961 -46996197 + AluSx SINE Alu 6 282 -30 2324 94 0 3 chr3 171041522 171041821 -46995337 + AluSx SINE Alu 5 302 -10 929 230 0 0 chr3 171041824 171041985 -46995173 + AluJo/FRAM SINE Alu 137 297 -5 1070 86 0 29 chr3 171041987 171042127 -46995031 + AluSq/x SINE Alu 1 136 -176 2214 98 6 41 chr3 171042127 171042443 -46994715 + AluSp SINE Alu 1 305 -8 388 119 17 2 chr3 171042454 171042526 -46994632 + L1ME1 LINE L1 6097 6161 -5 797 130 9 0 chr3 171042935 171043050 -46994108 - AluSp/q SINE Alu -12 301 186 2173 108 0 7 chr3 171043050 171043337 -46993821 + AluSx SINE Alu 1 285 -27 28 71 0 0 chr3 171043339 171043395 -46993763 + AT_rich Low_complexity Low_complexity 1 56 0 274 247 93 10 chr3 171043688 171043785 -46993373 + MER104 DNA Tc2 31 135 -45 434 157 121 0 chr3 171045405 171045488 -46991670 + MER46A DNA MER2_type 111 203 -33 2421 100 0 0 chr3 171046709 171047018 -46990140 - AluSx SINE Alu -3 309 1 29 101 0 0 chr3 171047599 171047698 -46989460 + AT_rich Low_complexity Low_complexity 1 99 0 1803 163 28 0 chr3 171047711 171047993 -46989165 + AluJb SINE Alu 15 304 -8 180 170 191 21 chr3 171048014 171048061 -46989097 - L2 LINE L2 -33 3280 3226 521 313 47 30 chr3 171048576 171048809 -46988349 - MIR SINE MIR -12 250 14 259 246 116 0 chr3 171048859 171048928 -46988230 + MIR3 SINE MIR 118 194 -14 1154 117 12 0 chr3 171049376 171049538 -46987620 + AluSg/x SINE Alu 127 290 -20 1534 176 46 69 chr3 171049590 171049896 -46987262 - AluJb SINE Alu -3 299 1 2095 126 0 0 chr3 171050279 171050592 -46986566 - AluSx SINE Alu 0 313 1 29 101 0 0 chr3 171051173 171051272 -46985886 + AT_rich Low_complexity Low_complexity 1 99 0 1794 164 29 0 chr3 171051285 171051566 -46985592 + AluJb SINE Alu 15 303 -9 180 170 191 21 chr3 171051586 171051633 -46985525 - L2 LINE L2 -33 3280 3226 521 313 47 30 chr3 171052148 171052381 -46984777 - MIR SINE MIR -12 250 14 259 246 116 0 chr3 171052431 171052500 -46984658 + MIR3 SINE MIR 118 194 -14 252 293 44 46 chr3 171052757 171052920 -46984238 - MIR SINE MIR -61 201 40 225 0 0 0 chr3 171052968 171052993 -46984165 + (TA)n Simple_repeat Simple_repeat 2 26 0 2095 130 16 3 chr3 171052997 171053305 -46983853 - AluSx SINE Alu 0 312 1 232 238 12 62 chr3 171053350 171053430 -46983728 - L1MC5 LINE L1 -48 7913 7838 2572 4 7 0 chr3 171053489 171053804 -46983354 - AluYa5 SINE Alu 0 317 1 260 305 57 50 chr3 171053914 171054270 -46982888 + HAL1b LINE L1 311 396 -952 295 175 0 18 chr3 171054727 171054784 -46982374 - Charlie2 DNA MER1_type -20 2842 2787 238 310 111 80 chr3 171054823 171055184 -46981974 - L2 LINE L2 -52 3220 2849 382 189 0 33 chr3 171055214 171055304 -46981854 + L1MEc LINE L1 35 121 -6275 2159 102 0 27 chr3 171055309 171055603 -46981555 + AluY SINE Alu 1 286 -25 1499 184 7 31 chr3 171055616 171055909 -46981249 - AluJo SINE Alu -26 286 1 181 0 33 33 chr3 171055914 171055944 -46981214 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 899 111 0 0 chr3 171055959 171056076 -46981082 - AluSq/x SINE Alu -196 117 1 696 146 0 27 chr3 171056532 171056642 -46980516 + AluSq/x SINE Alu 2 108 -204 192 152 0 0 chr3 171056671 171056704 -46980454 + A-rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr3 171058987 171059010 -46978148 + GC_rich Low_complexity Low_complexity 1 23 0 1014 50 8 0 chr3 171059535 171059656 -46977502 + AluSp SINE Alu 1 122 -191 1858 136 7 3 chr3 171059727 171060021 -46977137 - AluY SINE Alu -16 295 1 231 217 0 0 chr3 171060417 171060477 -46976681 + (TA)n Simple_repeat Simple_repeat 1 60 0 2238 94 3 3 chr3 171061254 171061563 -46975595 + AluSq SINE Alu 1 309 0 3928 175 23 41 chr3 171061563 171061968 -46975190 - L1MB3 LINE L1 -165 6018 5607 1955 109 18 14 chr3 171061968 171062251 -46974907 - AluSx SINE Alu -5 307 24 3928 175 23 41 chr3 171062251 171062665 -46974493 - L1MB3 LINE L1 -576 5607 5219 1708 194 3 22 chr3 171062665 171062979 -46974179 - AluJo SINE Alu 0 312 5 3928 175 23 41 chr3 171062979 171063095 -46974063 - L1MB3 LINE L1 -964 5219 5102 * 15973 154 22 26 chr3 171063081 171063599 -46973559 - L1MA3 LINE L1 -1 7723 7204 1982 157 3 0 chr3 171063599 171063898 -46973260 - AluJb SINE Alu -12 300 1 15973 154 22 26 chr3 171063898 171065216 -46971942 - L1MA3 LINE L1 -520 7204 5882 2253 126 0 0 chr3 171065216 171065517 -46971641 - AluSx SINE Alu -11 301 1 15973 154 22 26 chr3 171065517 171066105 -46971053 - L1MA3 LINE L1 -1842 5882 5293 2057 123 20 0 chr3 171066105 171066397 -46970761 - AluSx SINE Alu -14 298 1 15973 154 22 26 chr3 171066397 171067344 -46969814 - L1MA3 LINE L1 -2431 5293 4344 2199 122 0 0 chr3 171067344 171067632 -46969526 - AluSx SINE Alu -24 288 1 15973 154 22 26 chr3 171067632 171067814 -46969344 - L1MA3 LINE L1 -3380 4344 4163 2166 123 0 19 chr3 171067814 171068132 -46969026 - AluSx SINE Alu 0 312 1 15973 154 22 26 chr3 171068132 171068994 -46968164 - L1MA3 LINE L1 -3561 4163 3326 2057 123 20 0 chr3 171069011 171069303 -46967855 + AluSx SINE Alu 1 298 -14 425 95 40 0 chr3 171069311 171069385 -46967773 + L1 LINE L1 3890 3966 -2180 824 273 140 49 chr3 171119415 171119987 -46917171 + HAL1 LINE L1 226 849 -1658 2031 142 7 0 chr3 171120162 171120458 -46916700 - AluSx SINE Alu -14 298 1 2375 100 0 0 chr3 171120575 171120884 -46916274 - AluY SINE Alu -2 309 1 2092 116 0 20 chr3 171121403 171121706 -46915452 - AluSc SINE Alu -12 297 1 2126 127 0 16 chr3 171121867 171122043 -46915115 - AluSq SINE Alu -4 309 139 2314 99 3 0 chr3 171122043 171122337 -46914821 - AluSg SINE Alu -15 295 1 2126 127 0 16 chr3 171122337 171122474 -46914684 - AluSq SINE Alu -174 139 1 585 155 10 0 chr3 171122905 171123008 -46914150 - L1MB7 LINE L1 -85 6099 5996 * 2546 184 30 19 chr3 171122982 171123576 -46913582 - L1MB8 LINE L1 -169 6009 5475 * 3112 131 131 98 chr3 171123570 171123616 -46913542 - L1MB2 LINE L1 -9 6162 6119 2218 102 7 0 chr3 171123616 171123911 -46913247 - AluSx SINE Alu -15 297 1 3112 131 131 98 chr3 171123911 171124237 -46912921 - L1MB2 LINE L1 -52 6119 5805 1937 118 37 0 chr3 171124237 171124533 -46912625 + AluSq SINE Alu 1 306 0 3112 131 131 98 chr3 171124533 171124806 -46912352 - L1MB2 LINE L1 -366 5805 5543 2194 129 0 7 chr3 171124806 171125109 -46912049 + AluSx SINE Alu 1 301 -11 3112 131 131 98 chr3 171125109 171125271 -46911887 - L1MB2 LINE L1 -628 5543 5388 848 71 0 48 chr3 171125271 171125397 -46911761 - L1PA13 LINE L1 -18 6145 6026 3112 131 131 98 chr3 171125397 171125555 -46911603 - L1MB2 LINE L1 -783 5388 5151 249 303 108 56 chr3 171126112 171126307 -46910851 - MIR SINE MIR -3 259 55 724 276 108 9 chr3 171126658 171126890 -46910268 - MIR SINE MIR 0 262 8 1478 122 0 0 chr3 171127036 171127241 -46909917 + AluSg/x SINE Alu 104 308 -2 1777 134 16 49 chr3 171127598 171127905 -46909253 + AluSx SINE Alu 1 297 -15 254 198 105 0 chr3 171127995 171128081 -46909077 + L1MC5 LINE L1 7831 7925 -36 1318 198 84 26 chr3 171128167 171128440 -46908718 + AluJo SINE Alu 1 289 -13 294 225 144 18 chr3 171128466 171128577 -46908581 - MIR SINE MIR -57 205 81 23 86 0 0 chr3 171128755 171128813 -46908345 + AT_rich Low_complexity Low_complexity 1 58 0 306 324 118 46 chr3 171129146 171129408 -46907750 + L1MEd LINE L1 65 345 -5774 498 308 99 7 chr3 171129461 171129763 -46907395 + L1MEd LINE L1 498 827 -5292 602 303 157 49 chr3 171129852 171130361 -46906797 + L1MEd LINE L1 967 1419 -4891 525 213 200 13 chr3 171130361 171130511 -46906647 - MER5B DNA MER1_type 0 178 1 2452 72 7 0 chr3 171130511 171130818 -46906340 - AluSp SINE Alu -4 309 1 602 303 157 49 chr3 171130818 171131415 -46905743 + L1MEd LINE L1 1418 2238 -4072 296 156 56 22 chr3 171131493 171131583 -46905575 + L1MEd LINE L1 2253 2345 -3784 817 93 0 0 chr3 171132188 171132295 -46904863 - AluSg/x SINE Alu -8 301 195 1765 193 3 3 chr3 171132799 171133099 -46904059 - AluJo SINE Alu -12 300 1 540 14 0 0 chr3 171133305 171133374 -46903784 + L1PA3 LINE L1 6084 6152 -3 2238 87 39 0 chr3 171133531 171133817 -46903341 + AluSp SINE Alu 2 298 -15 364 267 77 46 chr3 171134588 171134796 -46902362 - L1ME4a LINE L1 -236 5885 5665 2133 127 3 7 chr3 171134807 171135115 -46902043 - AluSx SINE Alu -5 307 1 6871 14 0 0 chr3 171135325 171136136 -46901022 - L1PA2 LINE L1 -2 6153 5343 * 10821 26 4 0 chr3 171136130 171137476 -46899682 + L1PA2 LINE L1 3969 5319 -827 1915 162 0 13 chr3 171137610 171137913 -46899245 - AluJb SINE Alu -13 299 1 2303 104 0 7 chr3 171137976 171138273 -46898885 - AluSx SINE Alu -17 295 1 24 0 0 0 chr3 171138461 171138485 -46898673 + AT_rich Low_complexity Low_complexity 1 24 0 342 0 0 0 chr3 171139065 171139103 -46898055 + (CA)n Simple_repeat Simple_repeat 2 39 0 2242 126 0 0 chr3 171139697 171140007 -46897151 + AluSx SINE Alu 1 310 -2 291 176 78 59 chr3 171140893 171140995 -46896163 - MER103 DNA DNA -15 151 48 752 196 18 18 chr3 171141009 171141177 -46895981 - MLT1C LTR MaLR 0 467 300 583 187 19 32 chr3 171141206 171141361 -46895797 - MLT1C LTR MaLR -233 234 82 1860 102 10 76 chr3 171141974 171142288 -46894870 - AluSx SINE Alu -19 293 1 2872 176 21 4 chr3 171142319 171142849 -46894309 - MER82 DNA MER2_type -91 562 24 333 212 0 30 chr3 171144096 171144162 -46892996 - MER5C DNA MER1_type -260 64 1 2194 96 0 3 chr3 171146120 171146412 -46890746 - AluY SINE Alu -20 291 1 254 311 27 27 chr3 171146470 171146544 -46890614 + MIR SINE MIR 35 108 -100 238 312 136 32 chr3 171146879 171147004 -46890154 - MIR3 SINE MIR -48 160 23 338 275 61 15 chr3 171147914 171148045 -46889113 + MER103 DNA DNA 23 159 -7 254 311 27 27 chr3 171148913 171148987 -46888171 - MIR SINE MIR -100 108 35 2422 64 3 0 chr3 171149045 171149341 -46887817 + AluY SINE Alu 1 297 -14 320 252 48 102 chr3 171149893 171150014 -46887144 + MER5B DNA MER1_type 1 114 -64 2253 68 24 7 chr3 171150014 171150309 -46886849 - AluY SINE Alu -10 301 2 320 252 48 102 chr3 171150309 171150334 -46886824 + MER5B DNA MER1_type 114 139 -39 2277 91 3 16 chr3 171151829 171152138 -46885020 + AluSg SINE Alu 2 306 -4 5682 166 40 19 chr3 171152152 171152375 -46884783 - L1MCa LINE L1 -5274 1152 935 2210 114 0 35 chr3 171152375 171152690 -46884468 - AluSq SINE Alu -9 304 1 5682 166 40 19 chr3 171152690 171153575 -46883583 - L1MCa LINE L1 -5491 935 21 686 297 50 0 chr3 171153885 171154087 -46883071 - MLT1I LTR MaLR -3 406 195 2168 126 0 0 chr3 171154392 171154693 -46882465 - AluSx SINE Alu -11 301 1 252 133 17 67 chr3 171155328 171155388 -46881770 + Charlie8 DNA MER1_type 103 159 -2258 321 140 0 0 chr3 171155426 171155483 -46881675 + (TCCC)n Simple_repeat Simple_repeat 4 60 0 2037 124 0 0 chr3 171155499 171155772 -46881386 - AluSx SINE Alu -39 273 1 21 0 0 0 chr3 171155937 171155958 -46881200 + AT_rich Low_complexity Low_complexity 1 21 0 251 279 31 11 chr3 171156256 171156380 -46880778 + L1M4 LINE L1 5479 5611 -563 276 260 0 0 chr3 171157170 171157316 -46879842 + GA-rich Low_complexity Low_complexity 1 146 0 198 0 0 0 chr3 171157393 171157415 -46879743 + (T)n Simple_repeat Simple_repeat 1 22 0 347 273 45 8 chr3 171158295 171158427 -46878731 + L1P4 LINE L1 5674 5810 -356 207 204 0 0 chr3 171158577 171158621 -46878537 + A-rich Low_complexity Low_complexity 4 47 0 1668 115 3 28 chr3 171158740 171158827 -46878331 - Tigger7 DNA MER2_type 0 2487 2399 2133 149 3 3 chr3 171158827 171159175 -46877983 - MER7A DNA MER2_type 0 346 1 1668 115 3 28 chr3 171159175 171159351 -46877807 - Tigger7 DNA MER2_type -88 2399 2229 1954 150 27 0 chr3 171159351 171159645 -46877513 - AluSx SINE Alu -10 302 1 1668 115 3 28 chr3 171159645 171159666 -46877492 - Tigger7 DNA MER2_type -258 2229 2209 823 235 6 6 chr3 171159670 171159840 -46877318 - Tigger7 DNA MER2_type -2316 171 2 1952 115 54 0 chr3 171161744 171162022 -46875136 + AluSg SINE Alu 1 293 -17 2029 143 0 10 chr3 171162033 171162341 -46874817 - AluJo SINE Alu -7 305 1 2428 56 0 0 chr3 171163024 171163310 -46873848 + AluY SINE Alu 1 286 -25 495 78 0 0 chr3 171163910 171163974 -46873184 - AluJ/FLAM SINE Alu -225 87 24 715 286 57 40 chr3 171164572 171165052 -46872106 - MER90 LTR ERV1 -7 568 35 22 0 0 0 chr3 171165729 171165751 -46871407 + AT_rich Low_complexity Low_complexity 1 22 0 1014 189 55 21 chr3 171165961 171166252 -46870906 - LTR37A LTR ERV1 -24 402 102 2136 135 3 0 chr3 171166372 171166675 -46870483 + AluSx SINE Alu 3 306 -6 2372 103 0 0 chr3 171166733 171167044 -46870114 + AluY SINE Alu 1 311 0 24 67 0 0 chr3 171167055 171167100 -46870058 + AT_rich Low_complexity Low_complexity 1 45 0 29486 111 11 60 chr3 171167218 171173688 -46863470 - L1PA7 LINE L1 -4 6150 12 2285 136 0 0 chr3 171173712 171174100 -46863058 - AluSg SINE Alu 0 388 1 2151 135 0 16 chr3 171176035 171176338 -46860820 + AluSx SINE Alu 1 298 -14 497 338 103 13 chr3 171176674 171176908 -46860250 - MIR SINE MIR -2 260 6 36 23 0 0 chr3 171177649 171177692 -46859466 + AT_rich Low_complexity Low_complexity 1 43 0 1719 86 4 0 chr3 171177692 171177924 -46859234 - L1PA7 LINE L1 -4 6150 5918 574 67 0 0 chr3 171177952 171178027 -46859131 - U3 snRNA snRNA -141 76 2 1849 114 89 45 chr3 171178321 171178680 -46858478 + THE1C LTR MaLR 1 375 0 683 116 11 0 chr3 171178886 171178981 -46858177 - AluSg/x SINE Alu -18 292 197 402 281 0 33 chr3 171179837 171179958 -46857200 - MIR SINE MIR -77 185 69 2004 114 0 0 chr3 171180334 171180597 -46856561 + AluSx SINE Alu 1 263 -49 1652 203 137 24 chr3 171180766 171181220 -46855938 - MLT1D LTR MaLR 0 505 1 1487 236 20 46 chr3 171181955 171182451 -46854707 + L1MB7 LINE L1 4570 5052 -1094 2243 78 0 75 chr3 171182455 171182775 -46854383 + AluSc SINE Alu 1 296 -13 2966 176 63 52 chr3 171182801 171183575 -46853583 + L1MB7 LINE L1 5401 6183 -1 1316 204 55 17 chr3 171183573 171183917 -46853241 + L1MB8 LINE L1 5821 6177 -1 * 2713 133 14 18 chr3 171184686 171185122 -46852036 - Tigger2a DNA MER2_type 0 434 1 635 287 68 9 chr3 171187578 171187916 -46849242 - L1ME4a LINE L1 -242 5879 5522 299 254 100 18 chr3 171188157 171188267 -46848891 - MIR SINE MIR -80 182 64 23 0 0 0 chr3 171188524 171188547 -46848611 + AT_rich Low_complexity Low_complexity 1 23 0 592 256 152 6 chr3 171189290 171189454 -46847704 + MER5A DNA MER1_type 1 188 -1 2838 32 0 0 chr3 171191658 171191970 -46845188 + L1PA5 LINE L1 5837 6148 -6 252 0 0 0 chr3 171191971 171191999 -46845159 + (TA)n Simple_repeat Simple_repeat 1 28 0 328 280 40 10 chr3 171192020 171192120 -46845038 - MIR SINE MIR -114 148 46 283 227 57 23 chr3 171192228 171192316 -46844842 + MER103 DNA DNA 66 156 -10 614 274 5 19 chr3 171192620 171192828 -46844330 - L1MDb LINE L1 -5216 1193 989 250 250 16 0 chr3 171193840 171193904 -46843254 - L1MC/D LINE L1 -2063 5745 5681 339 325 223 26 chr3 171194117 171194498 -46842660 + L2 LINE L2 2812 3267 -5 188 239 0 0 chr3 171196047 171196093 -46841065 + L2 LINE L2 3257 3302 -11 351 337 30 6 chr3 171196704 171196873 -46840285 - MIR SINE MIR -49 213 41 198 0 0 0 chr3 171197510 171197532 -46839626 + (GA)n Simple_repeat Simple_repeat 1 22 0 1983 132 0 0 chr3 171198123 171198396 -46838762 - AluSx SINE Alu -39 273 1 855 194 47 57 chr3 171199014 171199056 -46838102 - MER3 DNA MER1_type 0 209 168 2340 101 0 0 chr3 171199056 171199363 -46837795 - AluSc SINE Alu -2 307 1 855 194 47 57 chr3 171199363 171199531 -46837627 - MER3 DNA MER1_type -41 168 1 1440 256 59 84 chr3 171199944 171201156 -46836002 - L2 LINE L2 -4 3309 2129 2205 75 0 0 chr3 171201383 171201650 -46835508 + AluY SINE Alu 1 267 -44 23 0 0 0 chr3 171203131 171203154 -46834004 + AT_rich Low_complexity Low_complexity 1 23 0 298 114 0 86 chr3 171203520 171203590 -46833568 - AluYb8 SINE Alu -1 307 244 260 363 0 0 chr3 171203664 171203799 -46833359 + A-rich Low_complexity Low_complexity 1 135 0 654 189 0 29 chr3 171204063 171204306 -46832852 + CT-rich Low_complexity Low_complexity 1 236 0 561 68 0 0 chr3 171204314 171204388 -46832770 + (TTCCC)n Simple_repeat Simple_repeat 5 78 0 1841 147 0 7 chr3 171204389 171204674 -46832484 - AluJb SINE Alu -29 283 1 23 33 0 0 chr3 171204874 171204904 -46832254 + AT_rich Low_complexity Low_complexity 1 30 0 188 217 22 22 chr3 171205967 171206013 -46831145 + L2 LINE L2 111 156 -3158 2044 147 0 7 chr3 171206531 171206838 -46830320 + AluSx SINE Alu 1 305 -7 182 217 0 17 chr3 171209408 171209468 -46827690 + CT-rich Low_complexity Low_complexity 2 60 0 364 365 82 24 chr3 171209469 171209724 -46827434 - L2 LINE L2 -25 3247 2978 6792 120 226 22 chr3 171209724 171211128 -46826030 + pTR5 LTR ERV1 749 2438 0 4671 137 8 0 chr3 171211506 171212176 -46824982 - L1PA14 LINE L1 -1 6160 5486 2844 105 15 0 chr3 171212176 171212562 -46824596 - L1PA13 LINE L1 0 6163 5769 647 76 0 22 chr3 171213685 171213777 -46823381 - LTR7 LTR ERV1 -2 448 359 1067 99 0 0 chr3 171213777 171213919 -46823239 - HERVH LTR ERV1 -7571 142 1 722 105 0 19 chr3 171213921 171214026 -46823132 - LTR7 LTR ERV1 -2 448 346 9578 149 17 9 chr3 171214027 171215158 -46822000 - L1PA13 LINE L1 -378 5785 4632 2187 103 3 50 chr3 171215158 171215479 -46821679 - AluSx SINE Alu -6 306 1 9578 149 17 9 chr3 171215479 171216471 -46820687 - L1PA13 LINE L1 -1531 4632 3650 765 73 36 36 chr3 171216470 171216491 -46820667 - L1P4 LINE L1 -668 5500 5480 * 2367 98 7 0 chr3 171216491 171216796 -46820362 - AluSx SINE Alu -5 307 1 765 73 36 36 chr3 171216796 171216911 -46820247 - L1P4 LINE L1 -687 5481 5364 2204 109 0 3 chr3 171217055 171217348 -46819810 + AluSx SINE Alu 1 292 -20 185 0 0 39 chr3 171218591 171218617 -46818541 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 2530 56 0 3 chr3 171219185 171219488 -46817670 + AluY SINE Alu 1 302 -9 2153 132 0 0 chr3 171219647 171219943 -46817215 - AluSx SINE Alu -16 296 1 1400 188 201 15 chr3 171220160 171220554 -46816604 - MER119 DNA MER1_type -1 582 116 1665 149 29 18 chr3 171220701 171220976 -46816182 + AluJb SINE Alu 9 286 -26 1837 136 0 4 chr3 171222563 171222827 -46814331 + AluSx SINE Alu 2 264 -48 195 42 0 0 chr3 171222834 171222858 -46814300 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 1545 202 24 7 chr3 171223073 171223370 -46813788 + AluJb SINE Alu 1 302 -10 202 111 0 28 chr3 171224330 171224366 -46812792 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 1110 214 15 0 chr3 171224613 171224819 -46812339 - MER8 DNA MER2_type -1 238 30 2336 60 40 0 chr3 171224844 171225142 -46812016 - AluY SINE Alu -1 310 1 1074 185 47 9 chr3 171226154 171226386 -46810772 - L1MC3 LINE L1 -115 7670 7430 2838 157 51 63 chr3 171226404 171227010 -46810148 - LTR9 LTR ERV1 -13 599 1 839 108 16 8 chr3 171227053 171227182 -46809976 - L1MB8 LINE L1 -1 6177 6048 647 199 111 22 chr3 171227192 171227275 -46809883 - L1ME LINE L1 -382 5784 5710 4589 117 48 12 chr3 171227275 171227782 -46809376 - LTR8 LTR ERV1 0 691 152 2038 62 7 51 chr3 171227782 171228078 -46809080 - AluY SINE Alu 0 307 24 4589 117 48 12 chr3 171228078 171228236 -46808922 - LTR8 LTR ERV1 -539 152 1 647 199 111 22 chr3 171228236 171228333 -46808825 - L1ME LINE L1 -456 5710 5588 6292 103 25 0 chr3 171228364 171229085 -46808073 - L1PA15 LINE L1 0 6165 5422 2332 91 3 7 chr3 171229085 171229392 -46807766 - AluY SINE Alu -5 306 1 6292 103 25 0 chr3 171229392 171229790 -46807368 - L1PA15 LINE L1 -743 5422 5036 2289 117 0 0 chr3 171229791 171230100 -46807058 - AluSx SINE Alu -2 310 2 2817 197 11 2 chr3 171230101 171230639 -46806519 - L1PA15 LINE L1 -1159 4987 4445 23 0 0 0 chr3 171230700 171230723 -46806435 + AT_rich Low_complexity Low_complexity 1 23 0 1042 174 27 89 chr3 171230723 171230982 -46806176 - L1MB8 LINE L1 -140 6038 5796 * 2911 194 145 12 chr3 171230979 171231731 -46805427 - L1MC3 LINE L1 -376 7409 6558 258 320 70 6 chr3 171232173 171232329 -46804829 + L1ME4a LINE L1 5956 6121 0 2062 135 3 10 chr3 171232361 171232665 -46804493 - AluSx SINE Alu -10 302 1 1319 96 0 0 chr3 171233557 171233723 -46803435 + AluSq SINE Alu 133 298 -15 209 317 111 28 chr3 171233931 171234111 -46803047 + MIR SINE MIR 63 257 -5 2237 110 0 0 chr3 171234490 171234789 -46802369 + AluSx SINE Alu 1 299 -13 38 39 0 0 chr3 171234964 171235016 -46802142 + AT_rich Low_complexity Low_complexity 1 52 0 6215 56 5 0 chr3 171235017 171235772 -46801386 - L1PA7 LINE L1 -11 6143 5385 35 0 0 0 chr3 171235772 171235807 -46801351 + AT_rich Low_complexity Low_complexity 1 35 0 5562 52 9 1 chr3 171235807 171236467 -46800691 - SVA Other Other 0 1386 722 279 56 0 0 chr3 171236467 171236503 -46800655 - L1PA7 LINE L1 -736 5395 5360 215 309 0 0 chr3 171238489 171238544 -46798614 + GA-rich Low_complexity Low_complexity 2 56 0 216 0 0 0 chr3 171240382 171240406 -46796752 + (T)n Simple_repeat Simple_repeat 1 24 0 2620 145 42 5 chr3 171240474 171240882 -46796276 + MSTA LTR MaLR 4 426 -2 1762 183 20 7 chr3 171242177 171242483 -46794675 - AluJo SINE Alu -2 310 1 1525 213 150 41 chr3 171242691 171243198 -46793960 + MER90 LTR ERV1 1 562 -13 1716 181 20 0 chr3 171243216 171243515 -46793643 - AluJo SINE Alu -7 305 1 1580 165 22 5 chr3 171243803 171244076 -46793082 - MLT1D LTR MaLR 0 505 250 312 295 7 54 chr3 171244105 171244254 -46792904 - L2 LINE L2 -253 3060 2919 259 312 165 9 chr3 171244398 171244507 -46792651 + L2 LINE L2 3144 3269 -3 2171 144 18 6 chr3 171244612 171244945 -46792213 + MER61A LTR ERV1 7 343 0 230 133 0 22 chr3 171245558 171245603 -46791555 + (TTCC)n Simple_repeat Simple_repeat 3 46 0 486 264 9 0 chr3 171245621 171245727 -46791431 - MER63A DNA MER1_type 0 210 104 818 284 19 5 chr3 171245764 171245979 -46791179 + MIR SINE MIR 23 240 -22 2850 138 26 30 chr3 171247409 171247874 -46789284 - MLT1C LTR MaLR -4 463 1 351 307 76 36 chr3 171247920 171248171 -46788987 - MIR SINE MIR 0 262 2 2245 96 10 3 chr3 171248321 171248624 -46788534 - AluSx SINE Alu -3 309 5 322 268 113 30 chr3 171248638 171248806 -46788352 - L1MC4 LINE L1 -1916 6126 5945 230 325 12 12 chr3 171249052 171249135 -46788023 + L2 LINE L2 3231 3313 0 5403 154 33 140 chr3 171249318 171249379 -46787779 - Charlie1a DNA MER1_type -1306 1455 1389 3553 83 39 2 chr3 171249379 171249839 -46787319 - L1PA10 LINE L1 -14 6154 5678 5403 154 33 140 chr3 171249839 171250247 -46786911 - Charlie1a DNA MER1_type -1372 1389 939 644 155 0 0 chr3 171250247 171250344 -46786814 + AluSg/x SINE Alu 200 296 -14 5403 154 33 140 chr3 171250344 171250655 -46786503 - Charlie1a DNA MER1_type -1822 939 596 2433 58 0 29 chr3 171250655 171250966 -46786192 + AluY SINE Alu 1 302 -9 5403 154 33 140 chr3 171250966 171251715 -46785443 - Charlie1a DNA MER1_type -2165 596 2 2287 77 7 7 chr3 171252033 171252350 -46784808 + AluSq SINE Alu 1 317 0 1628 285 67 18 chr3 171252742 171253402 -46783756 - L1ME3A LINE L1 -245 6205 5519 2356 126 119 12 chr3 171253403 171253743 -46783415 - Tigger3(Golem) DNA MER2_type -2 3026 2633 212 86 29 0 chr3 171253743 171253778 -46783380 + (TGAG)n Simple_repeat Simple_repeat 1 36 0 2356 126 119 12 chr3 171253778 171253850 -46783308 - Tigger3(Golem) DNA MER2_type -395 2633 2570 * 3035 147 6 6 chr3 171253830 171254327 -46782831 - Tigger3(Golem) DNA MER2_type -671 2358 1862 484 190 30 20 chr3 171254325 171254425 -46782733 - Tigger3(Golem) DNA MER2_type -2928 101 1 * 1303 193 40 124 chr3 171254633 171254701 -46782457 - MLT1B LTR MaLR 0 390 318 2240 131 0 0 chr3 171254701 171255014 -46782144 - AluSq SINE Alu 0 313 1 1303 193 40 124 chr3 171255014 171255371 -46781787 - MLT1B LTR MaLR -72 318 1 1066 261 35 33 chr3 171255421 171255850 -46781308 - L1ME3A LINE L1 -2125 4301 3872 2095 93 10 17 chr3 171256781 171257110 -46780048 + AluSq SINE Alu 2 328 0 5038 163 51 29 chr3 171257279 171257337 -46779821 - L1ME3A LINE L1 -5441 985 930 2200 114 0 35 chr3 171257337 171257652 -46779506 - AluSq SINE Alu -9 304 1 5038 163 51 29 chr3 171257652 171258537 -46778621 - L1ME3A LINE L1 -5496 930 21 762 283 42 5 chr3 171258849 171259112 -46778046 - MLT1I LTR MaLR -3 406 106 2166 126 0 0 chr3 171259356 171259657 -46777501 - AluSx SINE Alu -11 301 1 300 240 174 33 chr3 171260233 171260354 -46776804 + Charlie8 DNA MER1_type 11 148 -2269 321 140 0 0 chr3 171260392 171260449 -46776709 + (TCCC)n Simple_repeat Simple_repeat 4 60 0 2033 124 0 0 chr3 171260465 171260738 -46776420 - AluSx SINE Alu -39 273 1 21 0 0 0 chr3 171260903 171260924 -46776234 + AT_rich Low_complexity Low_complexity 1 21 0 291 284 95 17 chr3 171261221 171261337 -46775821 + L1M3 LINE L1 5479 5603 -581 243 267 0 0 chr3 171262135 171262281 -46774877 + GA-rich Low_complexity Low_complexity 1 146 0 198 0 0 0 chr3 171262359 171262381 -46774777 + (T)n Simple_repeat Simple_repeat 1 22 0 399 254 45 15 chr3 171263260 171263394 -46773764 + L1M3 LINE L1 5672 5809 -371 207 204 0 0 chr3 171263544 171263588 -46773570 + A-rich Low_complexity Low_complexity 4 47 0 1817 115 3 28 chr3 171263707 171263794 -46773364 - Tigger7 DNA MER2_type 0 2587 2499 2306 149 3 3 chr3 171263794 171264142 -46773016 - MER7A DNA MER2_type 0 346 1 1817 115 3 28 chr3 171264142 171264318 -46772840 - Tigger7 DNA MER2_type -88 2499 2329 1940 150 27 0 chr3 171264318 171264612 -46772546 - AluSx SINE Alu -10 302 1 1817 115 3 28 chr3 171264612 171264633 -46772525 - Tigger7 DNA MER2_type -258 2329 2309 895 235 6 6 chr3 171264637 171264807 -46772351 - Tigger7 DNA MER2_type -562 171 2 2104 111 7 7 chr3 171266714 171267042 -46770116 + AluSq SINE Alu 1 328 0 1606 164 0 16 chr3 171267042 171267347 -46769811 - L1P LINE L1 -799 5347 5048 286 252 67 74 chr3 171267974 171268109 -46769049 - MLT1J2 LTR MaLR -18 432 299 500 225 70 23 chr3 171268133 171268262 -46768896 + LTR33 LTR ERVL 44 178 -343 591 276 51 9 chr3 171268326 171268540 -46768618 + LTR33 LTR ERVL 297 519 -2 421 217 43 48 chr3 171268663 171268796 -46768362 - MLT1J2 LTR MaLR -286 164 65 269 289 0 74 chr3 171269442 171269632 -46767526 + C-rich Low_complexity Low_complexity 4 179 0 512 231 89 93 chr3 171270168 171270412 -46766746 + L1ME3A LINE L1 5620 5865 -290 1703 188 67 31 chr3 171270645 171271092 -46766066 + pTR5 LTR ERV1 741 1203 -1235 590 193 66 18 chr3 171271556 171271722 -46765436 + pTR5 LTR ERV1 1171 1344 -1094 5155 113 6 132 chr3 171271738 171272678 -46764480 + LTR12 LTR ERV1 5 826 0 1159 34 74 0 chr3 171272684 171272833 -46764325 + LTR12 LTR ERV1 555 714 0 266 324 65 0 chr3 171273621 171273729 -46763429 + MIR SINE MIR 4 118 -144 187 275 0 0 chr3 171273726 171273766 -46763392 + L2 LINE L2 3217 3256 -16 * 226 189 0 0 chr3 171273734 171273771 -46763387 + MIR SINE MIR 221 257 -5 1999 117 7 3 chr3 171273871 171274162 -46762996 - AluSq SINE Alu -14 299 8 189 344 11 21 chr3 171274219 171274312 -46762846 + L2 LINE L2 2409 2500 -814 189 0 0 0 chr3 171274476 171274497 -46762661 + (TC)n Simple_repeat Simple_repeat 2 22 0 720 148 0 0 chr3 171274497 171274598 -46762560 - AluJ SINE Alu -16 296 196 486 231 0 0 chr3 171274624 171274715 -46762443 - AluJ SINE Alu -105 207 117 2420 75 3 10 chr3 171274750 171275057 -46762101 + AluY SINE Alu 1 305 -6 367 232 11 32 chr3 171275071 171275166 -46761992 + L2 LINE L2 3221 3313 0 376 365 43 56 chr3 171275200 171275839 -46761319 + L2 LINE L2 2566 3265 -7 244 356 106 0 chr3 171277942 171278074 -46759084 + MIR SINE MIR 109 254 -8 395 292 151 47 chr3 171278299 171278611 -46758547 + L1ME4a LINE L1 5320 5598 -523 1630 99 5 18 chr3 171278611 171278855 -46758303 + AluSx SINE Alu 64 304 0 395 292 151 47 chr3 171278855 171279050 -46758108 + L1ME4a LINE L1 5598 5883 -238 238 290 37 0 chr3 171279219 171279326 -46757832 + L1ME4a LINE L1 5973 6083 -38 348 111 0 0 chr3 171279903 171279957 -46757201 + (TCCC)n Simple_repeat Simple_repeat 3 56 0 2048 199 88 0 chr3 171280204 171280645 -46756513 - L1ME1 LINE L1 -5 6161 5682 1042 171 0 0 chr3 171280648 171280818 -46756340 - FRAM SINE Alu -7 169 1 3846 213 50 45 chr3 171280819 171282253 -46754905 - L1ME1 LINE L1 -470 5696 4255 30858 115 19 60 chr3 171282258 171283058 -46754100 - L1PA7 LINE L1 -13 6141 5309 2032 90 0 25 chr3 171283058 171283336 -46753822 + AluY SINE Alu 39 309 -2 30858 115 19 60 chr3 171283336 171288526 -46748632 - L1PA7 LINE L1 -845 5309 428 258 32 0 0 chr3 171288526 171288557 -46748601 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 30858 115 19 60 chr3 171288557 171288958 -46748200 - L1PA7 LINE L1 -5726 428 12 1749 166 3 11 chr3 171289165 171289487 -46747671 - AluJo SINE Alu 0 320 1 1719 162 8 84 chr3 171289578 171289937 -46747221 + MER7A DNA MER2_type 3 332 -14 2426 138 78 16 chr3 171289937 171290342 -46746816 - LOR1b LTR ERV1 0 461 26 1794 156 22 101 chr3 171290342 171290707 -46746451 + MER1B DNA MER1_type 2 337 0 2426 138 78 16 chr3 171290707 171290735 -46746423 - LOR1b LTR ERV1 -435 26 1 412 298 80 32 chr3 171290784 171291223 -46745935 - L1M4 LINE L1 -812 5334 4875 1780 159 17 17 chr3 171291854 171292143 -46745015 + AluJo SINE Alu 1 289 -23 4792 131 109 56 chr3 171292311 171293822 -46743336 + pTR5 LTR ERV1 79 2438 0 340 345 24 12 chr3 171293828 171293996 -46743162 - L1M4 LINE L1 -1640 4506 4337 388 297 89 87 chr3 171294024 171294482 -46742676 - MLT1J LTR MaLR -35 476 18 718 311 74 21 chr3 171294483 171294808 -46742350 - LTR16C LTR ERVL -16 475 134 1271 185 17 4 chr3 171294929 171295161 -46741997 - MER58B DNA MER1_type -2 339 105 7449 120 17 16 chr3 171295161 171297264 -46739894 - L1MA3 LINE L1 -12 7712 5606 5936 199 20 16 chr3 171297258 171298577 -46738581 - L1MA3 LINE L1 -2366 5199 3875 * 1773 207 61 0 chr3 171298589 171298952 -46738206 - L1MA3 LINE L1 -6141 1424 1040 269 309 73 7 chr3 171298995 171299131 -46738027 - L1MC/D LINE L1 -2137 5671 5527 231 103 0 0 chr3 171299133 171299172 -46737986 + (TA)n Simple_repeat Simple_repeat 2 40 0 313 221 64 36 chr3 171299179 171299319 -46737839 + L1ME LINE L1 5699 5818 -303 502 66 0 0 chr3 171300036 171300097 -46737061 - L1P LINE L1 -4614 1532 1472 7139 65 15 0 chr3 171300097 171301015 -46736143 + L1PA7 LINE L1 5210 6139 -15 246 207 69 35 chr3 171301016 171301103 -46736055 + L1MC4 LINE L1 6614 6703 -1339 317 279 47 0 chr3 171301125 171301211 -46735947 + L1MC4 LINE L1 6614 6703 -1339 * 324 298 0 29 chr3 171301153 171301257 -46735901 - L1MC4 LINE L1 -1339 6703 6603 1781 214 212 17 chr3 171301261 171301801 -46735357 + LTR50 LTR ERVL 53 719 -76 2277 69 34 3 chr3 171301801 171302092 -46735066 - AluY SINE Alu -11 300 1 1781 214 212 17 chr3 171302092 171302140 -46735018 + LTR50 LTR ERVL 719 756 -39 1673 316 90 32 chr3 171302338 171303566 -46733592 + L2 LINE L2 2010 3313 0 270 335 37 62 chr3 171303646 171303807 -46733351 - MIR SINE MIR -85 177 21 422 307 8 24 chr3 171304028 171304155 -46733003 + MIR SINE MIR 25 149 -59 342 0 0 0 chr3 171304175 171304213 -46732945 + (CA)n Simple_repeat Simple_repeat 2 39 0 383 319 90 27 chr3 171304978 171305166 -46731992 + MIR3 SINE MIR 3 202 -6 886 234 83 10 chr3 171305946 171306138 -46731020 + MER63A DNA MER1_type 4 209 -1 21 89 0 0 chr3 171306474 171306530 -46730628 + AT_rich Low_complexity Low_complexity 1 56 0 2207 110 3 0 chr3 171307483 171307774 -46729384 - AluSq SINE Alu -21 292 1 417 288 97 38 chr3 171308111 171308482 -46728676 + L1ME LINE L1 4986 5378 -768 300 248 72 48 chr3 171308533 171308617 -46728541 + L1ME LINE L1 5520 5609 -512 1710 169 13 30 chr3 171308617 171308918 -46728240 + AluJb SINE Alu 1 296 -16 300 248 72 48 chr3 171308918 171308958 -46728200 + L1ME LINE L1 5609 5647 -474 317 256 73 55 chr3 171309498 171309662 -46727496 - MIR SINE MIR -52 210 44 447 219 48 9 chr3 171310002 171310107 -46727051 + MER91C DNA MER1_type 25 133 -7 694 176 119 25 chr3 171310334 171310493 -46726665 + MER20 DNA MER1_type 32 205 -14 397 288 55 0 chr3 171311922 171312049 -46725109 + MIR SINE MIR 23 158 -65 1798 114 13 94 chr3 171312057 171312400 -46724758 - AluSx SINE Alu 0 318 1 3650 129 29 2 chr3 171313600 171314113 -46723045 - MER1A DNA MER1_type 0 527 1 23 33 0 0 chr3 171314574 171314604 -46722554 + AT_rich Low_complexity Low_complexity 1 30 0 400 194 150 38 chr3 171314626 171314786 -46722372 - L1ME4a LINE L1 -44 6077 5900 229 263 51 44 chr3 171314881 171315018 -46722140 - L1ME4a LINE L1 -359 5762 5625 4330 51 14 0 chr3 171315312 171315820 -46721338 - L1PA7 LINE L1 0 6154 5640 444 353 112 30 chr3 171316015 171316657 -46720501 - L2 LINE L2 -12 3260 2566 807 295 97 65 chr3 171317344 171317849 -46719309 - MLT1G1 LTR MaLR 0 595 75 180 233 0 139 chr3 171318086 171318172 -46718986 + MIR SINE MIR 21 94 -114 203 328 16 0 chr3 171318271 171318332 -46718826 - L2 LINE L2 -7 3265 3204 436 192 26 0 chr3 171318863 171318941 -46718217 - MER5A DNA MER1_type -105 84 5 3989 105 115 103 chr3 171319111 171320492 -46716666 + pTR5 LTR ERV1 66 2438 0 360 284 142 0 chr3 171321236 171321377 -46715781 - MIR SINE MIR -49 213 53 553 281 0 65 chr3 171321680 171321774 -46715384 + MIR SINE MIR 90 168 -94 2176 136 7 0 chr3 171321774 171322084 -46715074 - AluSx SINE Alu 0 312 1 553 281 0 65 chr3 171322084 171322174 -46714984 + MIR SINE MIR 168 262 0 1754 150 3 41 chr3 171322913 171323227 -46713931 + AluJb SINE Alu 2 303 -9 367 302 113 5 chr3 171323234 171323446 -46713712 + MIR SINE MIR 28 262 0 290 213 11 69 chr3 171323456 171323557 -46713601 + MIR3 SINE MIR 60 158 -50 440 267 17 130 chr3 171323879 171324179 -46712979 - MLT1K LTR MaLR 0 588 323 312 143 0 0 chr3 171324204 171324260 -46712898 + (CAATA)n Simple_repeat Simple_repeat 3 58 0 207 369 79 9 chr3 171324729 171324943 -46712215 + L2 LINE L2 1020 1248 -2066 763 236 59 5 chr3 171325005 171325208 -46711950 + LTR33 LTR ERVL 3 216 -305 2498 67 0 0 chr3 171325287 171325584 -46711574 + AluY SINE Alu 1 297 -14 290 128 0 0 chr3 171326054 171326093 -46711065 - 5S rRNA rRNA -82 39 1 190 244 0 0 chr3 171326219 171326260 -46710898 + MIR SINE MIR 90 130 -132 491 215 158 32 chr3 171326337 171326422 -46710736 - MER5A DNA MER1_type -8 181 108 2074 134 10 0 chr3 171326422 171326727 -46710431 - AluSx SINE Alu -4 308 1 491 215 158 32 chr3 171326727 171326799 -46710359 - MER5A DNA MER1_type -81 108 4 243 301 233 0 chr3 171327390 171327553 -46709605 - MIR SINE MIR -12 250 50 253 294 55 0 chr3 171329126 171329233 -46707925 + MIR SINE MIR 28 146 -62 390 267 29 0 chr3 171330020 171330125 -46707033 - MER94 DNA DNA 0 134 27 1951 89 0 29 chr3 171330767 171331067 -46706091 + AluSq SINE Alu 11 302 0 202 189 0 0 chr3 171331642 171331679 -46705479 + CT-rich Low_complexity Low_complexity 3 39 0 2305 86 0 19 chr3 171331944 171332259 -46704899 - AluY SINE Alu 0 311 3 2094 139 3 0 chr3 171332947 171333249 -46703909 - AluSq SINE Alu -10 303 1 2133 119 13 22 chr3 171334813 171335125 -46702033 + AluSx SINE Alu 1 309 -3 295 39 0 59 chr3 171335125 171335176 -46701982 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 943 202 72 26 chr3 171335390 171335687 -46701471 + L1ME LINE L1 1183 1493 -5050 294 289 134 1 chr3 171335677 171335863 -46701295 + L1ME LINE L1 1907 2153 -4470 * 856 272 59 25 chr3 171335920 171336240 -46700918 + L2 LINE L2 2432 2762 -552 24 0 0 0 chr3 171336263 171336287 -46700871 + AT_rich Low_complexity Low_complexity 1 24 0 1158 176 18 0 chr3 171336298 171336520 -46700638 + L1MA4 LINE L1 6068 6293 -7 2738 211 53 32 chr3 171336540 171337279 -46699879 + Charlie2 DNA MER1_type 1994 2755 -107 1870 140 0 99 chr3 171337279 171337664 -46699494 - MER7A DNA MER2_type 0 346 2 2738 211 53 32 chr3 171337664 171337775 -46699383 + Charlie2 DNA MER1_type 2755 2862 0 753 279 171 43 chr3 171337894 171338379 -46698779 - MLT1H1 LTR MaLR 0 595 1 637 250 42 7 chr3 171338380 171338524 -46698634 - MIR SINE MIR -100 162 14 22 0 0 0 chr3 171339893 171339915 -46697243 + AT_rich Low_complexity Low_complexity 1 22 0 210 150 0 50 chr3 171391539 171391599 -46645559 + (TTTTG)n Simple_repeat Simple_repeat 2 58 0 180 158 0 0 chr3 171391637 171391675 -46645483 + T-rich Low_complexity Low_complexity 1 38 0 10619 50 20 7 chr3 171391743 171393185 -46643973 + L1P LINE L1 2231 3691 -2455 304 293 0 29 chr3 171393390 171393530 -46643628 + GA-rich Low_complexity Low_complexity 4 139 0 994 299 89 28 chr3 171393840 171394418 -46642740 - L2 LINE L2 -238 3034 2167 303 284 37 0 chr3 171394691 171394772 -46642386 - MIR SINE MIR -100 162 79 391 247 117 12 chr3 171396095 171396257 -46640901 - L1ME4a LINE L1 0 6121 5943 240 314 145 78 chr3 171397886 171397913 -46639245 + L2 LINE L2 994 1018 -2296 3140 147 51 6 chr3 171397913 171398425 -46638733 - MER34 LTR ERV1 -4 538 4 240 314 145 78 chr3 171398425 171399367 -46637791 + L2 LINE L2 1018 2122 -1192 2015 137 0 7 chr3 171399367 171399666 -46637492 - AluJo SINE Alu -9 303 7 240 314 145 78 chr3 171399666 171400347 -46636811 + L2 LINE L2 2122 2756 -558 13366 61 5 50 chr3 171401480 171404244 -46632914 + L1PA2 LINE L1 3356 5988 -167 1057 57 13 45 chr3 171404905 171405062 -46632096 - L1P LINE L1 -1457 4689 4538 * 4708 145 48 11 chr3 171405060 171405217 -46631941 + L1PBa LINE L1 2362 2512 -4350 2113 103 3 36 chr3 171405217 171405519 -46631639 + AluSq SINE Alu 1 292 -21 4708 145 48 11 chr3 171405519 171406709 -46630449 + L1PBa LINE L1 2512 3758 -3104 1637 85 0 9 chr3 171406725 171406948 -46630210 - pTR5 LTR ERV1 -2046 392 172 417 228 10 0 chr3 171406951 171407052 -46630106 - LTR30 LTR ERV1 -80 642 541 6323 101 11 28 chr3 171407053 171408212 -46628946 - pTR5 LTR ERV1 -417 2021 744 9663 205 16 9 chr3 171408212 171410348 -46626810 + L1 LINE L1 3770 5921 -941 645 70 0 0 chr3 171410348 171410430 -46626728 + L1PB1 LINE L1 6066 6151 0 271 392 0 0 chr3 171411427 171411598 -46625560 + G-rich Low_complexity Low_complexity 1 171 0 3653 79 24 4 chr3 171412034 171412527 -46624631 + MER4E LTR ERV1 264 766 0 1649 299 76 43 chr3 171413552 171414602 -46622556 - L2 LINE L2 -4 3309 2167 233 203 178 59 chr3 171414932 171415050 -46622108 - L2 LINE L2 0 3272 3141 2019 133 194 8 chr3 171415936 171416297 -46620861 - MSTA LTR MaLR 0 428 1 23 33 0 0 chr3 171416642 171416672 -46620486 + AT_rich Low_complexity Low_complexity 1 30 0 222 265 114 61 chr3 171416967 171416986 -46620172 - L2 LINE L2 0 3313 3296 2126 153 57 12 chr3 171416986 171417319 -46619839 + MER7A DNA MER2_type 1 346 0 222 265 114 61 chr3 171417319 171417563 -46619595 - L2 LINE L2 -17 3296 3036 274 219 130 73 chr3 171417878 171418001 -46619157 - HAL1 LINE L1 -307 2200 2071 341 105 219 0 chr3 171418008 171418122 -46619036 + MER4E LTR ERV1 1 139 -627 269 306 19 19 chr3 171418356 171418513 -46618645 + CT-rich Low_complexity Low_complexity 4 160 0 324 275 20 47 chr3 171419937 171420065 -46617093 + MIR SINE MIR 75 197 -63 2098 121 3 7 chr3 171420094 171420384 -46616774 - AluSx SINE Alu -16 296 8 860 164 37 98 chr3 171421373 171421679 -46615479 - L1ME2 LINE L1 -153 6013 5731 2171 206 48 48 chr3 171421705 171422600 -46614558 - L1MEc LINE L1 -3294 2921 2047 1909 147 32 64 chr3 171422602 171422861 -46614297 + MER47A DNA MER2_type 2 247 -2076 2360 126 39 8 chr3 171422861 171423225 -46613933 - THE1C LTR MaLR 0 375 1 1909 147 32 64 chr3 171423225 171423339 -46613819 + MER47A DNA MER2_type 247 363 -3 1461 298 77 23 chr3 171423341 171424159 -46612999 - L1MEc LINE L1 -4348 2048 1187 15537 103 15 13 chr3 171424176 171427197 -46609961 - L1PA8 LINE L1 -10 6477 3452 13601 125 14 24 chr3 171427648 171430934 -46606224 - L1PA8 LINE L1 -3219 3242 6 740 236 20 10 chr3 171430929 171431128 -46606030 - L1MC1 LINE L1 0 6333 6133 * 5824 185 29 12 chr3 171431154 171432178 -46604980 - L1PA13 LINE L1 -5745 1042 1 770 116 0 8 chr3 171432186 171432307 -46604851 - L1MCa LINE L1 -5375 1051 932 230 296 58 53 chr3 171432482 171432671 -46604487 - L1M4 LINE L1 -2301 3845 3656 924 265 23 23 chr3 171432729 171432948 -46604210 + MER58A DNA MER1_type 6 224 0 516 315 20 63 chr3 171433020 171433274 -46603884 + MIR SINE MIR 20 262 0 2040 119 3 7 chr3 171434187 171434472 -46602686 + AluSx SINE Alu 1 284 -28 22 0 0 0 chr3 171434494 171434516 -46602642 + AT_rich Low_complexity Low_complexity 1 22 0 440 325 117 31 chr3 171435229 171435736 -46601422 + L2 LINE L2 2494 3061 -211 542 253 174 105 chr3 171436705 171437192 -46599966 + LTR33 LTR ERVL 1 521 0 225 227 169 141 chr3 171439100 171439342 -46597816 - L2 LINE L2 -113 3159 2911 184 296 19 0 chr3 171440564 171440618 -46596540 - L2 LINE L2 -7 3306 3252 266 222 172 30 chr3 171440654 171440753 -46596405 - MIR3 SINE MIR -81 127 15 222 283 6 84 chr3 171442928 171443094 -46594064 - L2 LINE L2 -1 3312 3160 328 294 99 66 chr3 171443231 171443564 -46593594 - L2 LINE L2 -337 2977 2634 1871 178 17 0 chr3 171443730 171444028 -46593130 - AluJo SINE Alu -9 303 1 2126 218 103 38 chr3 171444251 171444985 -46592173 + MER21B LTR ERV1 1 865 -66 380 274 82 14 chr3 171445588 171445734 -46591424 - MIR SINE MIR -12 250 95 316 330 117 34 chr3 171446046 171446360 -46590798 - L2 LINE L2 -221 3051 2716 348 200 0 0 chr3 171446421 171446501 -46590657 + MER116 DNA Mariner 1 80 0 246 344 11 0 chr3 171446917 171447007 -46590151 - L2 LINE L2 0 3272 3182 410 269 110 46 chr3 171447160 171447379 -46589779 - MIR SINE MIR -10 252 20 950 185 15 0 chr3 171448357 171448552 -46588606 + L1PBa LINE L1 3 200 -6663 2842 136 16 10 chr3 171448554 171449284 -46587874 + L1PBa LINE L1 636 1519 -5344 232 49 49 33 chr3 171449284 171449345 -46587813 + (TAAAA)n Simple_repeat Simple_repeat 2 63 0 2197 100 14 3 chr3 171449345 171449695 -46587463 + L1PBa LINE L1 1512 1865 -4998 543 214 14 0 chr3 171449840 171449985 -46587173 - L2 LINE L2 -1202 2112 1966 1636 282 85 6 chr3 171449985 171450513 -46586645 - L2 LINE L2 -1639 1675 1106 320 376 8 8 chr3 171451459 171451584 -46585574 + MER5A DNA MER1_type 1 125 -64 182 386 16 16 chr3 171451492 171451619 -46585539 - MER5A DNA MER1_type -22 167 41 * 294 307 150 16 chr3 171451654 171451781 -46585377 + MER5A DNA MER1_type 1 144 -45 204 135 0 0 chr3 171451782 171451819 -46585339 + (TAA)n Simple_repeat Simple_repeat 3 39 0 414 247 75 46 chr3 171452023 171452197 -46584961 + MER5A DNA MER1_type 8 186 -3 821 268 101 61 chr3 171453316 171453693 -46583465 + L2 LINE L2 2920 3311 -2 2463 60 3 0 chr3 171453838 171454139 -46583019 + AluY SINE Alu 1 302 -9 188 163 0 41 chr3 171455993 171456042 -46581116 + CT-rich Low_complexity Low_complexity 2 48 0 720 266 59 11 chr3 171456164 171456450 -46580708 - HAL1 LINE L1 -99 2408 2109 1657 249 25 7 chr3 171456463 171456869 -46580289 - LTR16C LTR ERVL -10 481 69 592 237 123 51 chr3 171456884 171457259 -46579899 - HAL1 LINE L1 -403 2104 1703 1931 234 30 123 chr3 171457347 171457993 -46579165 - HAL1 LINE L1 -670 1837 1132 908 157 0 0 chr3 171457993 171458146 -46579012 - L1PB1 LINE L1 -1 6150 5998 1931 234 30 123 chr3 171458146 171458599 -46578559 - HAL1 LINE L1 -1375 1132 638 2231 103 0 0 chr3 171458599 171458904 -46578254 - AluSg SINE Alu 0 305 1 1931 234 30 123 chr3 171458904 171458917 -46578241 - HAL1 LINE L1 -1869 638 847 2210 98 3 23 chr3 171458917 171459224 -46577934 - AluSx SINE Alu -11 301 1 1931 234 30 123 chr3 171459224 171459352 -46577806 - HAL1 LINE L1 -1659 848 710 625 296 182 17 chr3 171459393 171459684 -46577474 + MLT2E LTR ERVL 30 368 -260 1981 190 104 4 chr3 171459773 171460226 -46576932 - MLT1D LTR MaLR -7 498 1 589 223 0 25 chr3 171460231 171460388 -46576770 + MLT2E LTR ERVL 476 628 0 948 301 67 39 chr3 171460388 171460986 -46576172 - HAL1 LINE L1 -1791 716 102 1070 129 62 24 chr3 171460989 171461199 -46575959 - L1MD2 LINE L1 -2 6357 6140 2353 81 3 34 chr3 171462020 171462340 -46574818 + AluSg SINE Alu 1 310 0 692 247 56 27 chr3 171462671 171463061 -46574097 - MLT1H LTR MaLR -2 593 116 356 320 120 85 chr3 171463121 171463278 -46573880 + L2 LINE L2 2944 3094 -178 1733 162 3 14 chr3 171463278 171463562 -46573596 - AluJb SINE Alu -31 281 1 356 320 120 85 chr3 171463562 171463720 -46573438 + L2 LINE L2 3094 3270 -2 207 0 0 0 chr3 171464167 171464190 -46572968 + (T)n Simple_repeat Simple_repeat 1 23 0 233 264 23 69 chr3 171464302 171464389 -46572769 - MIR3 SINE MIR -41 167 85 25 0 0 0 chr3 171464726 171464751 -46572407 + AT_rich Low_complexity Low_complexity 1 25 0 190 239 22 0 chr3 171464751 171464797 -46572361 + MER5A DNA MER1_type 130 176 -13 268 296 193 34 chr3 171464811 171464978 -46572180 - L2 LINE L2 -154 3159 2943 2133 110 32 29 chr3 171464978 171465287 -46571871 + AluSx SINE Alu 1 310 -2 268 296 193 34 chr3 171465287 171465352 -46571806 - L2 LINE L2 -370 2943 2890 234 326 34 0 chr3 171465352 171465441 -46571717 + L2 LINE L2 2728 2819 -495 771 278 213 0 chr3 171465599 171465980 -46571178 - L2 LINE L2 -1363 1951 1490 474 237 13 45 chr3 171469242 171469398 -46567760 + MLT1L LTR MaLR 7 157 -458 850 203 19 6 chr3 171469412 171469570 -46567588 + MER5A DNA MER1_type 26 185 -4 302 236 82 9 chr3 171469570 171469680 -46567478 + MLT1L LTR MaLR 144 261 -354 320 289 36 156 chr3 171471217 171471722 -46565436 + L2 LINE L2 2828 3271 -1 1291 202 157 57 chr3 171472400 171472870 -46564288 + LTR33 LTR ERVL 1 517 -4 715 307 104 4 chr3 171473698 171473949 -46563209 - MLT1K LTR MaLR -203 385 110 424 255 97 81 chr3 171474037 171474335 -46562823 - L3 LINE CR1 -32 1545 1243 7404 233 63 18 chr3 171475962 171479318 -46557840 - L1ME1 LINE L1 -4 6231 2720 806 192 17 17 chr3 171479328 171479505 -46557653 + MER2 DNA MER2_type 33 209 -136 251 184 61 0 chr3 171479534 171479583 -46557575 + MER2 DNA MER2_type 269 320 -25 1252 257 85 21 chr3 171479612 171480376 -46556782 - L1ME1 LINE L1 -3513 2702 1934 205 182 0 0 chr3 171480389 171480422 -46556736 + (CATATA)n Simple_repeat Simple_repeat 2 34 0 2414 92 3 0 chr3 171481410 171481716 -46555442 + AluSc SINE Alu 1 307 -2 364 253 131 38 chr3 171482705 171482942 -46554216 - L1ME4a LINE L1 -16 6105 5847 21 0 0 0 chr3 171483439 171483460 -46553698 + AT_rich Low_complexity Low_complexity 1 21 0 6106 141 37 3 chr3 171483460 171484953 -46552205 - L1MA2 LINE L1 -7 7716 6177 * 21891 151 17 11 chr3 171484952 171485611 -46551547 - L1MA2 LINE L1 -3264 4301 3647 2485 70 0 3 chr3 171485611 171485913 -46551245 - AluY SINE Alu -10 301 1 21891 151 17 11 chr3 171485913 171489506 -46547652 - L1MA2 LINE L1 -3918 3647 16 242 295 90 13 chr3 171490322 171490400 -46546758 + MIR SINE MIR 38 121 -87 2158 161 7 17 chr3 171490403 171490814 -46546344 - L1MA9 LINE L1 -1 6311 5905 12354 117 20 5 chr3 171490814 171493192 -46543966 - Tigger1 DNA MER2_type 0 2418 1 2602 148 47 20 chr3 171493192 171493218 -46543940 - L1MA9 LINE L1 -406 5906 5881 1288 288 42 15 chr3 171493218 171493693 -46543465 - L1PA5 LINE L1 -274 5880 5393 231 279 0 15 chr3 171494162 171494230 -46542928 + MIR SINE MIR 186 252 -10 315 244 202 0 chr3 171494324 171494443 -46542715 + HsTC2 DNA Tc2 2 144 -1754 * 649 221 95 48 chr3 171494440 171494671 -46542487 + HsTC2 DNA Tc2 1281 1698 -200 43786 33 22 1 chr3 171494671 171500688 -46536470 - L1PA2 LINE L1 -9 6146 1 454 281 99 0 chr3 171500690 171500911 -46536247 + HsTC2 DNA Tc2 1653 1895 -3 1548 165 7 18 chr3 171501223 171501502 -46535656 - AluJb SINE Alu -36 276 1 575 244 75 25 chr3 171502510 171502670 -46534488 + MIR SINE MIR 2 169 -93 258 258 0 47 chr3 171502699 171502799 -46534359 - MIR SINE MIR -76 132 38 1733 125 117 0 chr3 171503247 171503511 -46533647 + AluSg SINE Alu 1 295 -15 2437 160 24 0 chr3 171503669 171504050 -46533108 - MLT1B LTR MaLR 0 390 1 191 105 53 0 chr3 171504617 171504655 -46532503 + CT-rich Low_complexity Low_complexity 3 42 0 238 231 93 74 chr3 171504676 171504784 -46532374 - L2 LINE L2 -14 3299 3190 2020 123 7 23 chr3 171508230 171508540 -46528618 - AluSx SINE Alu -7 305 1 227 281 0 16 chr3 171510523 171510587 -46526571 + Charlie4 DNA MER1_type 1883 1945 -16 235 333 123 9 chr3 171510639 171510753 -46526405 - L2 LINE L2 -10 3262 3136 228 67 0 0 chr3 171510764 171510794 -46526364 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1979 91 18 7 chr3 171511415 171511701 -46525457 - L1MA4A LINE L1 -1 6302 6014 2423 74 0 0 chr3 171512174 171512470 -46524688 - AluY SINE Alu -15 296 1 1532 214 69 48 chr3 171512501 171512963 -46524195 - L1MD2 LINE L1 -9 6350 5879 180 0 0 0 chr3 171512963 171512983 -46524175 + (T)n Simple_repeat Simple_repeat 1 20 0 249 139 0 0 chr3 171513457 171513500 -46523658 + (TG)n Simple_repeat Simple_repeat 1 43 0 223 258 0 16 chr3 171513948 171514010 -46523148 + (TG)n Simple_repeat Simple_repeat 1 61 0 304 392 99 4 chr3 171515909 171516182 -46520976 - L3b LINE CR1 -183 1400 1102 2162 216 83 6 chr3 171517616 171518084 -46519074 - MLT1D LTR MaLR 0 505 2 276 246 14 14 chr3 171521021 171521090 -46516068 + L2 LINE L2 3204 3272 0 975 253 195 18 chr3 171523584 171524233 -46512925 - L2 LINE L2 -1 3312 2553 282 276 241 0 chr3 171524317 171524433 -46512725 + MIR SINE MIR 47 190 -72 21 36 0 0 chr3 171524593 171524621 -46512537 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 171525327 171525348 -46511810 + AT_rich Low_complexity Low_complexity 1 21 0 2329 78 0 13 chr3 171526220 171526528 -46510630 + AluY SINE Alu 2 305 -6 2073 101 32 0 chr3 171528152 171528429 -46508729 + AluSx SINE Alu 26 311 -1 2079 177 68 56 chr3 171529000 171529497 -46507661 + MLT1D LTR MaLR 1 503 -2 291 306 0 0 chr3 171529835 171529907 -46507251 - L2 LINE L2 -1 3312 3241 513 241 80 12 chr3 171530002 171530164 -46506994 - MIR SINE MIR -10 252 80 2131 127 0 3 chr3 171530428 171530720 -46506438 + AluSx SINE Alu 1 291 -21 390 254 5 114 chr3 171531771 171531972 -46505186 - MIR SINE MIR -24 238 60 435 295 58 19 chr3 171532056 171532212 -46504946 + MIR SINE MIR 3 164 -98 519 212 235 0 chr3 171532213 171532383 -46504775 - LTR33 LTR ERVL -8 513 304 469 244 15 8 chr3 171532507 171532638 -46504520 - LTR33 LTR ERVL -389 132 1 237 298 36 0 chr3 171532660 171532744 -46504414 + MIR SINE MIR 174 260 -2 544 233 64 45 chr3 171534019 171534221 -46502937 - MER102b DNA MER1_type -1 340 135 451 272 8 24 chr3 171534222 171534347 -46502811 + L2 LINE L2 3191 3313 0 243 217 17 0 chr3 171534361 171534421 -46502737 - MER102b DNA MER1_type -190 151 91 367 316 10 10 chr3 171534537 171534635 -46502523 - MIR3 SINE MIR -49 159 62 186 103 0 0 chr3 171534710 171534739 -46502419 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 1390 257 73 11 chr3 171534922 171535303 -46501855 - MLT1I LTR MaLR -4 405 1 338 309 10 0 chr3 171536625 171536722 -46500436 - L2 LINE L2 0 3313 3216 260 301 178 0 chr3 171537067 171537230 -46499928 - MIR SINE MIR -64 198 7 1724 165 95 6 chr3 171538019 171538334 -46498824 - MER2 DNA MER2_type 0 344 2 255 174 22 0 chr3 171540205 171540251 -46496907 - L2 LINE L2 0 3313 3267 729 290 60 24 chr3 171540739 171540991 -46496167 - MIR SINE MIR -1 261 1 40 49 0 0 chr3 171541241 171541302 -46495856 + AT_rich Low_complexity Low_complexity 1 61 0 920 101 17 0 chr3 171541368 171541487 -46495671 + BC200 scRNA scRNA 1 121 -79 195 100 0 0 chr3 171541488 171541518 -46495640 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 997 292 63 24 chr3 171542244 171542655 -46494503 + L2 LINE L2 2804 3230 -83 261 348 94 22 chr3 171543794 171544018 -46493140 - L2 LINE L2 -350 2964 2725 357 357 150 30 chr3 171544213 171544546 -46492612 - L3 LINE CR1 -686 891 519 274 303 53 53 chr3 171545961 171546093 -46491065 - L3 LINE CR1 -1327 250 119 242 148 37 37 chr3 171546841 171546895 -46490263 - L1M1 LINE L1 -4185 3380 3327 26 0 0 0 chr3 171548442 171548468 -46488690 + AT_rich Low_complexity Low_complexity 1 26 0 360 103 0 0 chr3 171549001 171549059 -46488099 + (CA)n Simple_repeat Simple_repeat 2 59 0 845 293 170 18 chr3 171549068 171549621 -46487537 - L1MC4a LINE L1 -1876 5932 5296 271 200 0 13 chr3 171549800 171549875 -46487283 - L1MC4a LINE L1 -1098 5048 4975 423 263 117 39 chr3 171550143 171550348 -46486810 + MIR SINE MIR 31 251 -11 263 351 19 58 chr3 171550628 171550782 -46486376 + L2 LINE L2 2611 2758 -556 2054 121 0 7 chr3 171551775 171552056 -46485102 + AluSx SINE Alu 1 279 -33 210 37 0 0 chr3 171552057 171552084 -46485074 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 271 336 9 9 chr3 171553066 171553182 -46483976 + CT-rich Low_complexity Low_complexity 2 117 0 320 256 131 60 chr3 171553345 171553513 -46483645 + MIR SINE MIR 10 189 -73 2441 81 10 3 chr3 171554001 171554309 -46482849 - AluSp SINE Alu -3 310 1 459 241 98 53 chr3 171555080 171555282 -46481876 - MIR SINE MIR -47 215 3 672 191 17 108 chr3 171557416 171557657 -46479501 + MER112 DNA MER1_type 33 251 -9 213 275 120 56 chr3 171558142 171558284 -46478874 + MER5A DNA MER1_type 11 161 -28 189 0 0 0 chr3 171558284 171558305 -46478853 + (T)n Simple_repeat Simple_repeat 1 21 0 1221 15 0 0 chr3 171558308 171558445 -46478713 - L1HS LINE L1 0 6155 6019 215 271 0 0 chr3 171558445 171558493 -46478665 - MER5B DNA MER1_type -130 48 1 536 215 208 0 chr3 171558895 171559044 -46478114 - MER5A DNA MER1_type -1 188 9 310 256 201 55 chr3 171560246 171560410 -46476748 - MER5A DNA MER1_type 0 189 2 205 323 124 38 chr3 171562200 171562386 -46474772 + MIR SINE MIR 12 213 -49 994 310 93 29 chr3 171563625 171564462 -46472696 - L2 LINE L2 0 3313 2167 303 284 37 0 chr3 171564737 171564818 -46472340 - MIR SINE MIR -100 162 79 1695 184 3 13 chr3 171565258 171565562 -46471596 - AluJb SINE Alu -11 301 1 1248 203 164 4 chr3 171565965 171566221 -46470937 + AluSg SINE Alu 1 297 -3 220 296 91 23 chr3 171568177 171568265 -46468893 - L3b LINE CR1 -8 1575 1482 206 245 20 0 chr3 171568944 171568993 -46468165 + CT-rich Low_complexity Low_complexity 1 50 0 345 287 70 9 chr3 171568993 171569108 -46468050 - L2 LINE L2 -1 3271 3150 1767 235 91 13 chr3 171569136 171569600 -46467558 - MLT1F1 LTR MaLR 0 567 68 240 111 0 0 chr3 171569727 171569763 -46467395 + (TG)n Simple_repeat Simple_repeat 1 36 0 307 255 13 0 chr3 171569763 171569862 -46467296 + L1MC4 LINE L1 1992 6983 -1339 2095 92 14 20 chr3 171569864 171570158 -46467000 - AluSp SINE Alu -21 292 1 195 129 0 0 chr3 171570421 171570452 -46466706 + (A)n Simple_repeat Simple_repeat 1 31 0 1891 156 10 16 chr3 171571532 171571846 -46465312 + AluJo SINE Alu 1 312 0 292 71 36 18 chr3 171571852 171571908 -46465250 + (GAAA)n Simple_repeat Simple_repeat 4 60 0 315 146 0 0 chr3 171572829 171572884 -46464274 + (CA)n Simple_repeat Simple_repeat 1 55 0 1227 152 22 165 chr3 171573272 171573834 -46463324 - Charlie5 DNA MER1_type 0 2624 1 208 319 21 32 chr3 171574490 171574584 -46462574 + MIR SINE MIR 170 262 0 274 253 48 0 chr3 171575653 171575736 -46461422 + MIR SINE MIR 117 203 -59 2145 230 48 89 chr3 171575909 171576125 -46461033 + L2 LINE L2 2247 2470 -843 1558 172 6 60 chr3 171576125 171576444 -46460714 + AluJo SINE Alu 1 302 -10 2145 230 48 89 chr3 171576444 171577335 -46459823 + L2 LINE L2 2470 3303 -10 1839 131 0 64 chr3 171577335 171577649 -46459509 - AluJo SINE Alu -10 302 9 2145 230 48 89 chr3 171577649 171577660 -46459498 + L2 LINE L2 3303 3313 0 410 310 9 0 chr3 171577671 171577784 -46459374 - L2 LINE L2 -4 3309 3196 211 278 0 0 chr3 171577785 171577857 -46459301 + (TA)n Simple_repeat Simple_repeat 1 72 0 657 198 117 61 chr3 171578125 171578372 -46458786 + MIR SINE MIR 2 262 0 2159 115 0 7 chr3 171579177 171579473 -46457685 - AluSg SINE Alu -16 294 1 2372 89 3 13 chr3 171580194 171580510 -46456648 + AluSp SINE Alu 1 313 0 558 283 69 28 chr3 171580815 171581062 -46456096 + MIR SINE MIR 6 262 0 439 256 117 7 chr3 171582033 171582170 -46454988 + L2 LINE L2 3160 3311 -2 2354 87 0 19 chr3 171582869 171583178 -46453980 - AluY SINE Alu -8 303 1 1109 157 22 5 chr3 171583772 171583957 -46453201 + MER53 DNA DNA 2 189 0 766 171 16 16 chr3 171584120 171584249 -46452909 - FRAM SINE Alu -10 166 38 199 302 0 19 chr3 171584334 171584387 -46452771 + MIR SINE MIR 45 96 -166 2272 212 51 26 chr3 171584645 171585178 -46451980 - L1ME3 LINE L1 -4 6158 5613 185 247 104 39 chr3 171586282 171586359 -46450799 - L2 LINE L2 -1113 2201 2120 1952 170 54 104 chr3 171586402 171586884 -46450274 - LTR32 LTR ERVL 0 471 14 372 269 172 0 chr3 171586924 171587069 -46450089 + MIR SINE MIR 20 189 -73 23 0 0 0 chr3 171587803 171587826 -46449332 + AT_rich Low_complexity Low_complexity 1 23 0 714 221 40 35 chr3 171587963 171588092 -46449066 + MIR SINE MIR 63 195 -67 1178 133 27 21 chr3 171588092 171588280 -46448878 - MER5A DNA MER1_type 0 189 1 714 221 40 35 chr3 171588280 171588349 -46448809 + MIR SINE MIR 195 262 0 711 215 95 25 chr3 171589677 171589835 -46447323 + MIR SINE MIR 35 203 -59 428 263 88 15 chr3 171589863 171590000 -46447158 + MIR3 SINE MIR 62 208 0 390 249 109 101 chr3 171590359 171590616 -46446542 + MIR SINE MIR 4 262 0 320 308 0 0 chr3 171591057 171591161 -46445997 - MIR SINE MIR -62 146 52 246 349 116 17 chr3 171591326 171591498 -46445660 - L2 LINE L2 -260 3053 2865 2129 132 0 0 chr3 171591514 171591817 -46445341 - AluSx SINE Alu -9 303 1 211 328 0 0 chr3 171591821 171591879 -46445279 - L2 LINE L2 0 3272 3215 1648 261 102 12 chr3 171594898 171595704 -46441454 - L2 LINE L2 -5 3308 2416 274 313 50 20 chr3 171596253 171596352 -46440806 - L2 LINE L2 -349 2965 2864 195 439 47 0 chr3 171596450 171596557 -46440601 - L2 LINE L2 -22 3250 3139 1097 161 16 0 chr3 171596631 171596824 -46440334 + L1MA7 LINE L1 6094 6289 -2 220 330 77 44 chr3 171597657 171597748 -46439410 + MIR3 SINE MIR 5 98 -110 188 297 63 63 chr3 171597789 171597900 -46439258 - MER5B DNA MER1_type -19 159 49 301 269 30 0 chr3 171597831 171597898 -46439260 + MER5A DNA MER1_type 71 139 -50 2239 107 10 0 chr3 171597900 171598209 -46438949 + AluSp SINE Alu 1 312 -1 653 299 126 11 chr3 171598259 171598624 -46438534 + MLT1I LTR MaLR 1 407 -2 603 188 20 0 chr3 171599169 171599270 -46437888 - MER81 DNA DNA -11 103 1 23 0 0 0 chr3 171601184 171601207 -46435951 + AT_rich Low_complexity Low_complexity 1 23 0 2480 214 108 17 chr3 171601695 171602359 -46434799 - MER50 LTR ERV1 0 734 10 209 30 61 0 chr3 171602669 171602702 -46434456 + (CTTG)n Simple_repeat Simple_repeat 2 36 0 180 0 0 0 chr3 171602712 171602732 -46434426 + (T)n Simple_repeat Simple_repeat 1 20 0 279 219 83 0 chr3 171603161 171603257 -46433901 - L1ME LINE L1 -267 5854 5751 882 219 28 0 chr3 171605218 171605396 -46431762 + MER5A DNA MER1_type 1 183 -6 357 272 0 12 chr3 171605386 171605467 -46431691 - MER5A DNA MER1_type -108 81 2 * 1044 203 16 0 chr3 171605498 171605680 -46431478 + MER58A DNA MER1_type 2 186 -38 336 102 0 0 chr3 171606231 171606280 -46430878 + (TTCC)n Simple_repeat Simple_repeat 4 52 0 2422 67 0 10 chr3 171606285 171606582 -46430576 - AluY SINE Alu -17 294 1 561 252 57 31 chr3 171606845 171607004 -46430154 + MIR SINE MIR 3 165 -97 496 266 135 35 chr3 171607729 171608011 -46429147 + L2 LINE L2 3004 3313 0 1772 273 69 12 chr3 171608143 171608794 -46428364 - L1M4 LINE L1 -1950 4196 3509 244 287 85 0 chr3 171608853 171608947 -46428211 + MARNA DNA Mariner 415 516 -70 2917 3 0 0 chr3 171610961 171611272 -46425886 + AluYa5 SINE Alu 1 311 0 23 33 0 0 chr3 171611350 171611380 -46425778 + AT_rich Low_complexity Low_complexity 1 30 0 454 301 41 7 chr3 171612870 171613016 -46424142 + MIR SINE MIR 57 207 -55 36 44 0 15 chr3 171613705 171613719 -46423439 + AT_rich Low_complexity Low_complexity 1 14 -53 2400 94 30 86 chr3 171613719 171614008 -46423150 + L1PA8 LINE L1 5773 6034 -138 2421 54 7 3 chr3 171614008 171614306 -46422852 + AluY SINE Alu 1 299 -12 2400 94 30 86 chr3 171614306 171614421 -46422737 + L1PA8 LINE L1 6034 6154 -18 36 44 0 15 chr3 171614421 171614474 -46422684 + AT_rich Low_complexity Low_complexity 14 67 0 437 365 35 15 chr3 171616054 171616251 -46420907 + L2 LINE L2 2571 2771 -543 230 314 51 22 chr3 171616440 171616577 -46420581 + L2 LINE L2 2970 3110 -162 236 89 0 125 chr3 171617626 171617662 -46419496 + (GAAAA)n Simple_repeat Simple_repeat 2 30 -20 1559 81 0 10 chr3 171617662 171617860 -46419298 + L1PA6 LINE L1 5957 6152 -2 236 89 0 125 chr3 171617860 171617879 -46419279 + (GAAAA)n Simple_repeat Simple_repeat 30 50 0 249 318 15 0 chr3 171618646 171618712 -46418446 - L2 LINE L2 -5 3267 3201 303 214 0 0 chr3 171619254 171619310 -46417848 + MER94 DNA DNA 2 57 -77 2209 114 0 3 chr3 171619310 171619607 -46417551 + AluSg SINE Alu 1 296 -14 191 321 58 51 chr3 171620296 171620433 -46416725 - MIR SINE MIR -96 166 29 545 295 71 11 chr3 171621354 171621635 -46415523 - L1ME4a LINE L1 -204 5917 5620 272 288 192 64 chr3 171622055 171622274 -46414884 - L2 LINE L2 -97 3175 2929 1104 243 194 19 chr3 171622832 171623260 -46413898 + L2 LINE L2 2811 3313 0 294 219 50 50 chr3 171624040 171624159 -46412999 + MIR SINE MIR 61 179 -83 2323 110 0 0 chr3 171624195 171624505 -46412653 + AluSx SINE Alu 1 310 -2 3611 227 84 34 chr3 171625899 171628079 -46409079 - L1MC3 LINE L1 -743 5403 4138 693 245 76 0 chr3 171629115 171629299 -46407859 - MIR SINE MIR 0 262 65 450 318 54 0 chr3 171629458 171629587 -46407571 - L2 LINE L2 -21 3251 3116 1337 204 72 42 chr3 171629996 171630373 -46406785 - Charlie4a DNA MER1_type -81 427 40 420 263 128 6 chr3 171630963 171631119 -46406039 - MIR SINE MIR -6 256 82 721 341 125 34 chr3 171631132 171632455 -46404703 + L2 LINE L2 1808 3272 0 2549 58 3 0 chr3 171634918 171635227 -46401931 + AluY SINE Alu 1 310 -1 283 287 46 11 chr3 171635449 171635536 -46401622 + L2 LINE L2 3121 3210 -62 300 311 38 28 chr3 171635957 171636063 -46401095 - MIR SINE MIR -65 143 37 188 167 56 0 chr3 171636636 171636708 -46400450 + (TA)n Simple_repeat Simple_repeat 2 77 0 225 244 0 0 chr3 171636900 171636945 -46400213 - L2 LINE L2 -724 2590 2546 5509 257 104 30 chr3 171638066 171640000 -46397158 - L2 LINE L2 -724 2590 512 185 281 145 103 chr3 171641352 171641779 -46395379 - L2 LINE L2 0 3272 2828 23 0 0 0 chr3 171641985 171642008 -46395150 + AT_rich Low_complexity Low_complexity 1 23 0 3558 122 23 2 chr3 171642008 171642540 -46394618 - L1MC1 LINE L1 -5 6328 5786 354 272 44 9 chr3 171643128 171643242 -46393916 + L2 LINE L2 3194 3311 -2 1491 221 124 34 chr3 171643753 171644186 -46392972 + MLT2B1 LTR ERVL 5 484 -36 414 0 0 0 chr3 171644186 171644232 -46392926 + (CA)n Simple_repeat Simple_repeat 2 47 0 1491 221 124 34 chr3 171644232 171644264 -46392894 + MLT2B1 LTR ERVL 484 512 -8 334 310 108 19 chr3 171644742 171644900 -46392258 + MER5B DNA MER1_type 7 178 0 244 254 0 15 chr3 171647574 171647641 -46389517 - MLT1K LTR MaLR -322 266 201 204 178 96 68 chr3 171648816 171648889 -46388269 - L2 LINE L2 -58 3214 3140 307 403 21 47 chr3 171649489 171649725 -46387433 + L2 LINE L2 3043 3272 0 252 340 75 38 chr3 171649741 171650006 -46387152 - L2 LINE L2 -410 2904 2630 279 355 28 0 chr3 171650454 171650595 -46386563 - L2 LINE L2 -1690 1624 1480 294 242 0 0 chr3 171650598 171650660 -46386498 - LTR16C LTR ERVL 0 491 430 566 317 89 57 chr3 171650853 171651345 -46385813 - L2 LINE L2 -1813 1501 994 5230 179 23 5 chr3 171651612 171652804 -46384354 - L1PA10 LINE L1 -3 6165 5004 21 57 0 0 chr3 171653355 171653390 -46383768 + AT_rich Low_complexity Low_complexity 1 35 0 477 238 106 25 chr3 171653711 171653871 -46383287 + MER5B DNA MER1_type 6 178 0 2369 104 0 0 chr3 171654478 171654786 -46382372 + AluSg SINE Alu 1 308 -2 251 246 35 0 chr3 171654788 171654845 -46382313 + MIR SINE MIR 23 81 -181 189 0 0 0 chr3 171654969 171654990 -46382168 + (T)n Simple_repeat Simple_repeat 1 21 0 188 218 164 0 chr3 171654990 171655045 -46382113 - MIR SINE MIR -74 188 125 279 254 60 0 chr3 171655193 171655260 -46381898 - L2 LINE L2 -41 3231 3161 276 250 14 0 chr3 171655824 171655896 -46381262 - L2 LINE L2 0 3272 3200 21 0 0 0 chr3 171655982 171656003 -46381155 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 171657696 171657717 -46379441 + AT_rich Low_complexity Low_complexity 1 21 0 1354 107 10 15 chr3 171658780 171658985 -46378173 - L1PA10 LINE L1 -2 6166 5963 251 238 112 77 chr3 171659198 171659341 -46377817 + MIR SINE MIR 70 217 -45 378 0 0 0 chr3 171659483 171659525 -46377633 + (CA)n Simple_repeat Simple_repeat 2 43 0 240 269 244 8 chr3 171660016 171660135 -46377023 + MER5A DNA MER1_type 43 189 0 190 297 125 0 chr3 171660260 171660324 -46376834 - MIR3 SINE MIR -126 82 11 318 202 12 83 chr3 171660606 171660690 -46376468 + MIR SINE MIR 35 112 -150 2083 136 0 0 chr3 171660759 171661060 -46376098 + AluSg SINE Alu 1 301 -9 664 256 6 11 chr3 171661109 171661285 -46375873 - MER5B DNA MER1_type -2 176 2 243 350 15 44 chr3 171661367 171661504 -46375654 - L2 LINE L2 -2 3270 3138 189 311 202 8 chr3 171661613 171661732 -46375426 - MIR3 SINE MIR -1 207 66 185 265 61 0 chr3 171661833 171661882 -46375276 - L2 LINE L2 -254 3018 2967 1365 254 121 57 chr3 171662347 171663205 -46373953 + L2 LINE L2 2420 3308 -5 24 0 0 0 chr3 171663230 171663254 -46373904 + AT_rich Low_complexity Low_complexity 1 24 0 1132 199 82 0 chr3 171663352 171663619 -46373539 + L1MC4a LINE L1 7434 7722 -86 293 331 33 33 chr3 171664598 171664749 -46372409 - L2 LINE L2 -4 3309 3159 2441 279 60 31 chr3 171664772 171666590 -46370568 - Charlie8 DNA MER1_type -26 2391 482 366 231 26 109 chr3 171666860 171667016 -46370142 - Charlie8 DNA MER1_type -2274 143 1 181 307 68 34 chr3 171667164 171667252 -46369906 + MIR SINE MIR 2 92 -170 307 331 57 74 chr3 171668375 171668550 -46368608 - MER91A DNA MER1_type 0 196 25 429 284 18 0 chr3 171669014 171669123 -46368035 - MER81 DNA DNA 0 114 4 328 288 41 47 chr3 171669126 171669296 -46367862 + MIR SINE MIR 90 258 -4 323 295 115 15 chr3 171669525 171669725 -46367433 + MIR SINE MIR 43 262 0 1434 269 21 19 chr3 171669894 171670317 -46366841 - LTR16A LTR ERVL -11 439 16 275 321 48 0 chr3 171671071 171671155 -46366003 + L3 LINE CR1 1416 1503 -74 370 209 35 0 chr3 171671617 171671703 -46365455 - MLT1L LTR MaLR -349 266 178 285 345 33 10 chr3 171671770 171671921 -46365237 - MIR SINE MIR -29 179 19 196 308 188 0 chr3 171673481 171673598 -46363560 - L2 LINE L2 -624 2690 2552 1332 209 138 32 chr3 171676904 171677316 -46359842 - MLT1C LTR MaLR 0 467 12 515 301 49 6 chr3 171677689 171677852 -46359306 + MIR SINE MIR 47 216 -46 216 0 0 0 chr3 171680230 171680254 -46356904 + (TAA)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chr3 171680916 171680944 -46356214 + AT_rich Low_complexity Low_complexity 1 28 0 2360 186 27 16 chr3 171681696 171682211 -46354947 - L1MB7 LINE L1 0 6184 5664 25 51 0 0 chr3 171682231 171682270 -46354888 + AT_rich Low_complexity Low_complexity 1 39 0 616 135 19 0 chr3 171682270 171682374 -46354784 - L1PB3 LINE L1 -3 6151 6046 2100 138 3 52 chr3 171682681 171683066 -46354092 - MER47A DNA MER2_type 0 366 1 24 0 0 0 chr3 171683363 171683387 -46353771 + AT_rich Low_complexity Low_complexity 1 24 0 189 121 0 0 chr3 171683619 171683652 -46353506 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 180 111 0 0 chr3 171684084 171684111 -46353047 + (TG)n Simple_repeat Simple_repeat 2 28 0 586 305 121 0 chr3 171684197 171684420 -46352738 + MIR SINE MIR 7 256 -6 1931 110 0 8 chr3 171684989 171685252 -46351906 - AluSx SINE Alu 0 312 52 772 151 0 8 chr3 171686118 171686244 -46350914 + FLAM_C SINE Alu 1 125 -18 280 269 13 0 chr3 171687634 171687712 -46349446 - MIR3 SINE MIR -43 165 87 644 278 179 55 chr3 171687740 171688247 -46348911 + L2 LINE L2 2244 2813 -501 236 328 60 26 chr3 171688509 171688625 -46348533 + L2 LINE L2 3151 3270 -2 590 83 0 15 chr3 171691885 171691904 -46345254 - L1M3 LINE L1 -554 5597 5579 2761 137 4 34 chr3 171691904 171692267 -46344891 - L1PB1 LINE L1 -8 6143 5796 531 82 0 0 chr3 171692267 171692340 -46344818 + (CA)n Simple_repeat Simple_repeat 2 74 0 2761 137 4 34 chr3 171692340 171692445 -46344713 - L1PB1 LINE L1 -355 5796 5689 590 83 0 15 chr3 171692445 171692523 -46344635 - L1M3 LINE L1 -572 5579 5520 32 57 0 0 chr3 171695347 171695400 -46341758 + AT_rich Low_complexity Low_complexity 1 53 0 1282 123 16 87 chr3 171696010 171696089 -46341069 - MER33 DNA MER1_type -2265 320 237 1475 117 0 0 chr3 171696089 171696303 -46340855 + L1PA8 LINE L1 5959 6172 0 1282 123 16 87 chr3 171696303 171696589 -46340569 - MER33 DNA MER1_type -2348 237 1 265 119 0 102 chr3 171696596 171696655 -46340503 + L2 LINE L2 3261 3313 0 302 299 36 22 chr3 171697455 171697592 -46339566 + MIR SINE MIR 21 159 -103 478 293 117 25 chr3 171698034 171698273 -46338885 - L2 LINE L2 0 3313 3053 703 291 55 5 chr3 171698340 171698539 -46338619 + MIR SINE MIR 20 228 -34 382 279 16 41 chr3 171700648 171700770 -46336388 + MIR SINE MIR 78 196 -66 272 177 124 18 chr3 171701003 171701116 -46336042 - L1MC4 LINE L1 0 8042 7918 238 246 16 0 chr3 171701160 171701221 -46335937 - L1MC4 LINE L1 -210 7832 7771 1934 173 22 0 chr3 171701332 171701701 -46335457 - L1PA16 LINE L1 -1 6165 5789 695 298 45 0 chr3 171701741 171702030 -46335128 - L1MC4 LINE L1 -646 7396 7095 2535 292 65 42 chr3 171703850 171705278 -46331880 - L2 LINE L2 0 3313 1859 2453 284 124 22 chr3 171705500 171707316 -46329842 + HAL1 LINE L1 155 2156 -351 375 294 6 34 chr3 171707311 171707488 -46329670 - L1M4 LINE L1 -2314 3832 3661 * 346 293 32 69 chr3 171707659 171707847 -46329311 - MIR3 SINE MIR -4 204 24 489 236 170 74 chr3 171708060 171708424 -46328734 + MLT1H1 LTR MaLR 66 507 -42 661 222 100 22 chr3 171708487 171708757 -46328401 + HAL1 LINE L1 2216 2506 -1 2860 216 75 26 chr3 171709196 171710073 -46327085 - L1MC4a LINE L1 -9 7799 6880 2653 108 21 0 chr3 171710606 171710984 -46326174 - L1PA11 LINE L1 0 6174 5789 2096 106 0 0 chr3 171710984 171711287 -46325871 + L1PA11 LINE L1 5502 5804 -370 951 272 25 12 chr3 171711322 171711565 -46325593 + MIR SINE MIR 17 262 0 2586 113 6 3 chr3 171711979 171712342 -46324816 + THE1B LTR MaLR 1 364 0 31 26 0 0 chr3 171712766 171712804 -46324354 + AT_rich Low_complexity Low_complexity 1 38 0 8146 117 13 12 chr3 171713615 171714037 -46323121 + HSMAR2 DNA Mariner 5 425 -877 1930 142 60 31 chr3 171714037 171714390 -46322768 + THE1B LTR MaLR 2 364 0 8146 117 13 12 chr3 171714390 171715262 -46321896 + HSMAR2 DNA Mariner 425 1301 -1 310 324 55 0 chr3 171715428 171715573 -46321585 + MIR SINE MIR 96 248 -14 385 249 78 102 chr3 171716996 171717169 -46319989 + L1M4 LINE L1 4381 4556 -1590 2151 114 3 7 chr3 171717169 171717477 -46319681 - AluSx SINE Alu -5 307 1 385 249 78 102 chr3 171717477 171717499 -46319659 + L1M4 LINE L1 4556 4577 -1569 2805 71 3 0 chr3 171717499 171717853 -46319305 - THE1A LTR MaLR 0 355 1 385 249 78 102 chr3 171717853 171718277 -46318881 + L1M4 LINE L1 4577 4986 -1160 378 0 0 0 chr3 171718277 171718319 -46318839 + (CA)n Simple_repeat Simple_repeat 1 42 0 385 249 78 102 chr3 171718319 171718385 -46318773 + L1M4 LINE L1 4986 5052 -1094 5517 128 36 5 chr3 171719510 171720489 -46316669 - L1MA5 LINE L1 -2 6298 5290 191 361 66 8 chr3 171720651 171720773 -46316385 + MIR SINE MIR 46 174 -88 304 347 135 25 chr3 171720875 171721120 -46316038 - L2 LINE L2 -9 3263 2992 215 323 19 71 chr3 171722021 171722176 -46314982 - L2 LINE L2 -189 3083 2937 679 296 139 42 chr3 171722275 171722778 -46314380 - L2 LINE L2 -536 2778 2227 1971 133 56 14 chr3 171723745 171724105 -46313053 - THE1C LTR MaLR 0 375 1 341 308 119 45 chr3 171724502 171724694 -46312464 + L1ME4a LINE L1 5728 5904 -217 2095 109 0 3 chr3 171724694 171724977 -46312181 + AluSx SINE Alu 1 282 -30 341 308 119 45 chr3 171724977 171725014 -46312144 + L1ME4a LINE L1 5904 5937 -184 2300 106 3 0 chr3 171725014 171725315 -46311843 + AluSx SINE Alu 1 302 -10 341 308 119 45 chr3 171725315 171725396 -46311762 + L1ME4a LINE L1 5937 6062 -59 213 121 0 0 chr3 171726007 171726040 -46311118 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 335 302 122 14 chr3 171726553 171726692 -46310466 + MIR SINE MIR 30 183 -79 303 200 57 0 chr3 171726802 171726872 -46310286 + MIR SINE MIR 175 248 -14 191 224 0 15 chr3 171726888 171726955 -46310203 + CT-rich Low_complexity Low_complexity 4 69 0 242 237 34 0 chr3 171727185 171727244 -46309914 + Tigger6 DNA MER2_type 1518 1578 -19 1253 230 88 93 chr3 171727348 171728115 -46309043 - L1MC4 LINE L1 -194 7848 7085 1831 134 70 3 chr3 171728115 171728399 -46308759 - AluSx SINE Alu -9 303 1 1253 230 88 93 chr3 171728399 171728476 -46308682 - L1MC4 LINE L1 -957 7085 7009 2595 142 16 14 chr3 171728577 171728928 -46308230 - L1 LINE L1 -1378 4768 4414 2493 142 24 16 chr3 171728928 171729351 -46307807 - MSTB LTR MaLR 0 426 1 2595 142 16 14 chr3 171729351 171729506 -46307652 - L1 LINE L1 -1732 4414 4261 2055 116 17 3 chr3 171732705 171732999 -46304159 - AluSg SINE Alu -12 298 1 867 293 172 17 chr3 171732999 171733883 -46303275 + L2 LINE L2 2300 3313 0 241 263 53 0 chr3 171734060 171734117 -46303041 + L2 LINE L2 3227 3286 -27 2249 123 0 3 chr3 171736623 171736933 -46300225 + AluSg SINE Alu 1 309 -1 6934 109 40 21 chr3 171736998 171737664 -46299494 + Tigger3b DNA MER2_type 23 722 -2306 2125 132 0 3 chr3 171737664 171737968 -46299190 - AluSg SINE Alu -3 307 5 6934 109 40 21 chr3 171737968 171738488 -46298670 + Tigger3b DNA MER2_type 722 1231 0 1140 170 47 18 chr3 171738488 171738764 -46298394 - MER33 DNA MER1_type -35 289 6 189 283 9 97 chr3 171738800 171738913 -46298245 - MIR SINE MIR -30 232 130 438 244 135 0 chr3 171739372 171739528 -46297630 + MIR SINE MIR 72 248 -14 549 333 93 43 chr3 171740534 171740933 -46296225 - L2 LINE L2 -5 3267 2849 1180 173 113 48 chr3 171741286 171741657 -46295501 + L1MB8 LINE L1 5784 6178 0 744 211 58 23 chr3 171741663 171741834 -46295324 + MER5A DNA MER1_type 12 188 -1 186 367 32 6 chr3 171741842 171742000 -46295158 - L2 LINE L2 -774 2540 2379 325 305 149 36 chr3 171742171 171743042 -46294116 - L2 LINE L2 -1486 1828 859 280 295 70 39 chr3 171744111 171744240 -46292918 + L2 LINE L2 3136 3268 -4 362 308 46 15 chr3 171745031 171745161 -46291997 - L2 LINE L2 -5 3308 3175 285 267 186 23 chr3 171745177 171745349 -46291809 - L2 LINE L2 -1 3312 3113 751 281 157 22 chr3 171745508 171745921 -46291237 - L2 LINE L2 -339 2975 2507 258 302 83 79 chr3 171747594 171748064 -46289094 + L2 LINE L2 2177 2648 -666 1109 193 137 0 chr3 171748295 171748580 -46288578 + MER33 DNA MER1_type 1 324 0 184 211 0 0 chr3 171748639 171748677 -46288481 - L2 LINE L2 -88 3225 3188 23 0 0 0 chr3 171749455 171749478 -46287680 + AT_rich Low_complexity Low_complexity 1 23 0 4384 180 28 14 chr3 171751237 171752465 -46284693 - L1MB2 LINE L1 -47 6124 4879 339 255 38 38 chr3 171752459 171752616 -46284542 - L1ME4a LINE L1 -252 5869 5713 * 259 252 16 150 chr3 171752818 171752899 -46284259 + MIR SINE MIR 21 81 -127 2209 163 5 47 chr3 171752899 171753303 -46283855 + MLT1B LTR MaLR 4 390 0 259 252 16 150 chr3 171753303 171753348 -46283810 + MIR SINE MIR 81 130 -78 198 0 0 0 chr3 171753513 171753535 -46283623 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 205 200 0 20 chr3 171754389 171754439 -46282719 + A-rich Low_complexity Low_complexity 3 51 0 623 280 75 67 chr3 171754453 171754842 -46282316 + MLT1J LTR MaLR 94 485 -26 1113 148 92 24 chr3 171754855 171755105 -46282053 - MER33 DNA MER1_type -56 268 2 1285 121 6 0 chr3 171755461 171755643 -46281515 - AluSg/x SINE Alu -10 302 120 736 259 69 20 chr3 171755754 171756001 -46281157 - L1ME LINE L1 -372 5749 5491 525 44 0 0 chr3 171756021 171756089 -46281069 + (TTCC)n Simple_repeat Simple_repeat 4 71 0 1638 174 24 10 chr3 171756098 171756396 -46280762 - AluJo SINE Alu -10 302 1 2982 201 24 56 chr3 171756658 171757468 -46279690 - L1ME1 LINE L1 -5 6182 5411 1247 300 69 21 chr3 171757884 171758490 -46278668 - L2 LINE L2 -7 3306 2670 460 252 15 8 chr3 171758495 171758626 -46278532 - MER113 DNA MER1_type? -389 132 1 324 263 25 0 chr3 171759129 171759209 -46277949 + MLT1J LTR MaLR 423 504 -7 323 324 71 11 chr3 171760163 171760340 -46276818 - MIR SINE MIR -63 145 1 403 263 194 29 chr3 171760373 171760548 -46276610 + MIR SINE MIR 8 211 -51 1800 191 3 0 chr3 171760641 171760950 -46276208 - AluJo SINE Alu -2 310 1 692 284 139 10 chr3 171760990 171761300 -46275858 - L2 LINE L2 0 3313 2964 498 227 87 53 chr3 171761300 171761450 -46275708 + MER69A DNA AcHobo 4 158 -19 1379 253 155 7 chr3 171761464 171761902 -46275256 - L2 LINE L2 -354 2960 2458 241 267 38 67 chr3 171761902 171762007 -46275151 - L2 LINE L2 -1114 2200 2099 247 342 99 0 chr3 171762191 171762343 -46274815 + MIR3 SINE MIR 27 193 -15 198 0 0 0 chr3 171762372 171762394 -46274764 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 2325 69 45 0 chr3 171762814 171763104 -46274054 - AluY SINE Alu -8 303 1 324 272 72 40 chr3 171763108 171763233 -46273925 - MIR SINE MIR -61 147 19 3446 166 48 35 chr3 171763330 171764052 -46273106 - L1MB7 LINE L1 -9 6175 5444 267 135 0 0 chr3 171764055 171764092 -46273066 - MER3 DNA MER1_type -126 83 47 378 215 47 28 chr3 171764150 171764257 -46272901 - MIR SINE MIR -6 256 148 2272 139 82 0 chr3 171764260 171764590 -46272568 + LTR18A LTR ERVL 1 357 0 1802 184 0 0 chr3 171764604 171764886 -46272272 + HERVL18 LTR ERVL 9 290 -5757 * 34222 154 9 8 chr3 171764883 171770132 -46267026 + HERVL18 LTR ERVL 790 6047 0 2444 123 56 6 chr3 171770133 171770473 -46266685 + LTR18A LTR ERVL 1 357 0 381 250 153 32 chr3 171770473 171770597 -46266561 - MIR SINE MIR -122 140 2 197 237 0 0 chr3 171770714 171770752 -46266406 - MER5A DNA MER1_type 0 189 152 1107 269 92 41 chr3 171770876 171771288 -46265870 - MLT1J LTR MaLR -78 433 1 729 259 12 6 chr3 171771399 171771565 -46265593 - MER5B DNA MER1_type 0 178 12 533 304 114 31 chr3 171772278 171772663 -46264495 - L3b LINE CR1 -39 1544 1128 863 211 17 11 chr3 171772665 171772840 -46264318 - MER5B DNA MER1_type -1 177 2 691 240 41 12 chr3 171772938 171773109 -46264049 + MER5B DNA MER1_type 3 178 0 920 218 11 11 chr3 171773117 171773305 -46263853 + MER5A DNA MER1_type 1 188 -1 320 293 128 61 chr3 171773306 171773704 -46263454 + MLT1J LTR MaLR 109 501 -10 367 267 31 29 chr3 171773838 171773972 -46263186 + MER5B DNA MER1_type 1 145 -44 1055 200 6 6 chr3 171774008 171774183 -46262975 + MER96 DNA MER1_type 1 175 0 317 305 33 34 chr3 171776138 171776339 -46260819 + MIR SINE MIR 19 221 -41 190 319 43 32 chr3 171776344 171776438 -46260720 + MIR3 SINE MIR 69 163 -45 242 239 75 66 chr3 171776455 171776496 -46260662 + MER5A DNA MER1_type 29 68 -110 2117 167 116 25 chr3 171776496 171776892 -46260266 + MSTB1 LTR MaLR 1 432 0 242 239 75 66 chr3 171776892 171776988 -46260170 + MER5A DNA MER1_type 68 178 0 228 287 115 112 chr3 171777624 171777990 -46259168 - L2 LINE L2 -19 3253 2887 188 253 149 35 chr3 171778037 171778124 -46259034 - L2 LINE L2 -168 3104 3008 1062 257 149 23 chr3 171778678 171779358 -46257800 + L2 LINE L2 2544 3313 0 299 316 181 12 chr3 171779540 171779939 -46257219 + L2 LINE L2 2126 2591 -723 1112 235 63 74 chr3 171780158 171780512 -46256646 + L2 LINE L2 2889 3239 -74 180 111 0 0 chr3 171780512 171780539 -46256619 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1112 235 63 74 chr3 171780539 171780614 -46256544 + L2 LINE L2 3239 3313 0 2030 117 4 4 chr3 171780847 171781164 -46255994 - AluSx SINE Alu 0 317 1 21 0 0 0 chr3 171781751 171781772 -46255386 + AT_rich Low_complexity Low_complexity 1 21 0 1890 135 0 17 chr3 171782027 171782345 -46254813 + AluSx SINE Alu 3 315 0 374 274 286 4 chr3 171782345 171782590 -46254568 + MER5C DNA MER1_type 11 324 0 970 223 136 24 chr3 171782671 171783047 -46254111 + MER113 DNA MER1_type? 45 462 -59 308 329 49 0 chr3 171785927 171786070 -46251088 - L1P3 LINE L1 -704 5468 5319 218 185 37 19 chr3 171786680 171786734 -46250424 + CT-rich Low_complexity Low_complexity 5 59 0 531 257 99 6 chr3 171786763 171786934 -46250224 + MIR SINE MIR 34 220 -42 1150 297 34 23 chr3 171786948 171787335 -46249823 + MLT1I LTR MaLR 16 406 -3 462 292 113 56 chr3 171788049 171788422 -46248736 + L1ME1 LINE L1 36 429 -5967 6090 218 69 5 chr3 171788567 171790067 -46247091 + L1ME1 LINE L1 2525 4121 -2094 2841 212 62 57 chr3 171790053 171790607 -46246551 + L1ME1 LINE L1 5094 5643 -592 * 2406 67 0 19 chr3 171790607 171790921 -46246237 - AluY SINE Alu -3 308 1 2841 212 62 57 chr3 171790921 171791503 -46245655 + L1ME1 LINE L1 5643 6235 0 1092 188 5 14 chr3 171791518 171791726 -46245432 + MIR SINE MIR 10 215 -47 220 277 36 48 chr3 171791832 171791915 -46245243 + L2 LINE L2 3231 3312 -1 837 143 48 0 chr3 171791972 171792119 -46245039 + L1MB4 LINE L1 6025 6178 -2 3567 17 0 34 chr3 171792606 171793019 -46244139 - L1PA3 LINE L1 0 6155 5757 306 333 22 22 chr3 171794301 171794391 -46242767 - L2 LINE L2 -3 3269 3180 * 632 274 283 31 chr3 171794371 171795415 -46241743 - L2 LINE L2 -308 3005 1712 2195 117 0 3 chr3 171795578 171795878 -46241280 + AluSc SINE Alu 1 299 -10 25 0 0 0 chr3 171796270 171796295 -46240863 + AT_rich Low_complexity Low_complexity 1 25 0 1599 207 79 27 chr3 171796868 171797312 -46239846 - MLT1C LTR MaLR 0 467 1 395 233 160 25 chr3 171797549 171797709 -46239449 + MER5A DNA MER1_type 2 189 0 392 354 6 0 chr3 171797721 171797896 -46239262 + L2 LINE L2 647 822 -2492 2565 125 44 2 chr3 171797992 171798401 -46238757 - MSTA LTR MaLR -2 426 1 989 334 105 13 chr3 171799357 171800073 -46237085 + L2 LINE L2 915 1696 -1618 497 262 79 24 chr3 171800100 171800279 -46236879 - MIR SINE MIR -60 202 18 2428 47 0 59 chr3 171800305 171800626 -46236532 - AluY SINE Alu -9 302 1 227 232 0 18 chr3 171800733 171800789 -46236369 - L1MC4 LINE L1 -28 8014 7960 200 171 0 49 chr3 171800789 171800830 -46236328 + (CATA)n Simple_repeat Simple_repeat 4 42 0 4359 168 18 88 chr3 171800837 171801128 -46236030 + Tigger6a DNA MER2_type 72 382 -1215 2077 92 3 38 chr3 171801128 171801447 -46235711 + AluSg SINE Alu 1 309 0 4359 168 18 88 chr3 171801447 171801938 -46235220 + Tigger6a DNA MER2_type 382 761 -836 1760 178 0 7 chr3 171801938 171802250 -46234908 - AluJb SINE Alu 0 310 1 4359 168 18 88 chr3 171802250 171802552 -46234606 + Tigger6a DNA MER2_type 761 1083 0 1393 238 86 85 chr3 171802556 171803388 -46233770 - L1MC4 LINE L1 -124 7918 7083 1831 134 70 3 chr3 171803388 171803672 -46233486 - AluSx SINE Alu -9 303 1 1393 238 86 85 chr3 171803672 171803747 -46233411 - L1MC4 LINE L1 -959 7083 7010 189 0 0 0 chr3 171803881 171803902 -46233256 + (TTAG)n Simple_repeat Simple_repeat 2 22 0 558 249 24 35 chr3 171804116 171804285 -46232873 - MIR3 SINE MIR -18 190 24 500 86 0 12 chr3 171804825 171804906 -46232252 + L1PA8 LINE L1 6091 6170 -2 2489 62 0 3 chr3 171805182 171805489 -46231669 + AluY SINE Alu 1 306 -5 1449 121 24 0 chr3 171806276 171806482 -46230676 - AluSq SINE Alu -14 299 89 23 0 0 0 chr3 171806784 171806807 -46230351 + AT_rich Low_complexity Low_complexity 1 23 0 629 187 60 123 chr3 171810023 171810291 -46226867 - MER112 DNA MER1_type -4 252 2 1971 133 56 14 chr3 171810926 171811286 -46225872 + THE1C LTR MaLR 1 375 0 196 354 4 4 chr3 171813283 171813375 -46223783 - MIR SINE MIR -87 121 30 822 290 34 0 chr3 171813384 171813622 -46223536 + MIR SINE MIR 17 262 0 23 33 0 0 chr3 171814972 171815002 -46222156 + AT_rich Low_complexity Low_complexity 1 30 0 602 257 80 6 chr3 171815668 171815893 -46221265 - MIR SINE MIR -19 243 7 2007 153 0 10 chr3 171816873 171817174 -46219984 + AluJb SINE Alu 1 298 -14 235 242 165 33 chr3 171817238 171817329 -46219829 + MIR SINE MIR 126 228 -34 1178 135 78 5 chr3 171817923 171818116 -46219042 + AluJb SINE Alu 82 288 -24 224 221 44 106 chr3 171819507 171819620 -46217538 - MER5A DNA MER1_type -43 146 41 191 264 69 35 chr3 171820434 171820521 -46216637 - MIR SINE MIR -55 207 118 258 327 0 56 chr3 171821014 171821121 -46216037 + L2 LINE L2 2613 2713 -601 228 373 18 30 chr3 171821323 171821492 -46215666 + L2 LINE L2 2367 2533 -781 2296 88 7 23 chr3 171821561 171821866 -46215292 + AluSc SINE Alu 1 300 -9 258 284 15 0 chr3 171822978 171823045 -46214113 - L2 LINE L2 0 3313 3246 877 314 12 0 chr3 171823078 171823323 -46213835 - MIR SINE MIR -1 261 14 279 0 0 0 chr3 171823573 171823604 -46213554 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2611 86 8 28 chr3 171825155 171825390 -46211768 + THE1A LTR MaLR 1 228 -127 2369 92 0 3 chr3 171825390 171825685 -46211473 + AluSq SINE Alu 2 295 -18 2611 86 8 28 chr3 171825685 171825811 -46211347 + THE1A LTR MaLR 228 355 0 11077 100 20 7 chr3 171825811 171827369 -46209789 + THE1A-int LTR MaLR 1 1578 -2 2487 101 20 0 chr3 171827371 171827719 -46209439 + THE1A LTR MaLR 1 355 0 340 254 231 40 chr3 171828095 171828268 -46208890 + MIR SINE MIR 31 236 -26 323 353 59 29 chr3 171828459 171828765 -46208393 + L2 LINE L2 1815 2129 -1185 601 339 8 16 chr3 171829385 171829627 -46207531 + MIR SINE MIR 5 244 -18 24 32 0 0 chr3 171829708 171829739 -46207419 + AT_rich Low_complexity Low_complexity 1 31 0 354 23 0 0 chr3 171829746 171829789 -46207369 + (TG)n Simple_repeat Simple_repeat 2 44 0 2666 187 48 12 chr3 171830061 171830563 -46206595 + MLT2B1 LTR ERVL 1 520 0 286 241 36 9 chr3 171830594 171830630 -46206528 - L1ME4a LINE L1 -39 6082 6048 1826 176 0 37 chr3 171830630 171830954 -46206204 + AluJb SINE Alu 1 312 0 286 241 36 9 chr3 171830954 171831029 -46206129 - L1ME4a LINE L1 -73 6048 5968 340 237 11 0 chr3 171831254 171831347 -46205811 - L1ME4a LINE L1 -67 6054 5961 241 229 14 0 chr3 171831381 171831451 -46205707 - L1ME4a LINE L1 -253 5868 5798 276 279 132 97 chr3 171831826 171831929 -46205229 - MLT1K LTR MaLR -123 465 367 2554 107 3 0 chr3 171831929 171832283 -46204875 + THE1A LTR MaLR 1 355 0 11555 98 4 3 chr3 171832283 171833862 -46203296 + THE1A-int LTR MaLR 1 1580 0 2643 76 6 6 chr3 171833863 171834217 -46202941 + THE1A LTR MaLR 2 355 0 276 279 132 97 chr3 171834217 171834490 -46202668 - MLT1K LTR MaLR -220 368 73 1884 131 80 17 chr3 171834747 171835099 -46202059 + THE1C LTR MaLR 1 374 -1 240 278 90 21 chr3 171835274 171835508 -46201650 - L1ME4a LINE L1 -157 5964 5715 2469 106 20 3 chr3 171837497 171837855 -46199303 - THE1B LTR MaLR 0 364 1 315 274 24 0 chr3 171838060 171838144 -46199014 - MER81 DNA DNA 0 114 29 494 294 215 36 chr3 171838794 171839161 -46197997 + L2 LINE L2 1345 1645 -1669 693 254 17 11 chr3 171839161 171839338 -46197820 + MER5B DNA MER1_type 1 178 0 494 294 215 36 chr3 171839338 171839950 -46197208 + L2 LINE L2 1645 2500 -814 295 261 15 0 chr3 171841505 171841570 -46195588 + L2 LINE L2 3205 3270 -2 23 0 0 0 chr3 171842241 171842264 -46194894 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 171842536 171842558 -46194600 + AT_rich Low_complexity Low_complexity 1 22 0 402 261 145 25 chr3 171843021 171843262 -46193896 - L1ME4a LINE L1 -53 6068 5799 339 314 154 0 chr3 171843815 171843971 -46193187 + MIR SINE MIR 83 262 0 289 266 119 32 chr3 171844769 171844987 -46192171 - MLT1L LTR MaLR -324 291 55 289 358 78 28 chr3 171847186 171847404 -46189754 + L2 LINE L2 2818 3046 -226 326 226 67 85 chr3 171847511 171847675 -46189483 - LTR67 LTR ERVL -40 517 357 240 194 32 16 chr3 171847821 171847883 -46189275 - MLT1J LTR MaLR -349 162 100 260 266 5 71 chr3 171848041 171848225 -46188933 - L1M4 LINE L1 -3765 2381 2210 277 310 96 35 chr3 171848866 171849063 -46188095 + L2 LINE L2 1336 1544 -1770 23 33 0 0 chr3 171849180 171849210 -46187948 + AT_rich Low_complexity Low_complexity 1 30 0 499 286 67 22 chr3 171849345 171849569 -46187589 - L2 LINE L2 -4 3309 3076 187 331 35 56 chr3 171849549 171849691 -46187467 - L2 LINE L2 -400 2914 2776 * 201 94 0 0 chr3 171849764 171849796 -46187362 + (CA)n Simple_repeat Simple_repeat 1 32 0 1859 199 79 66 chr3 171849797 171850415 -46186743 - L1ME3 LINE L1 -84 6078 5453 606 129 0 0 chr3 171850422 171850515 -46186643 + Tigger4(Zombi) DNA MER2_type 1 93 -2638 * 4874 115 20 36 chr3 171850513 171851368 -46185790 + Tigger4(Zombi) DNA MER2_type 1891 2731 0 280 131 33 16 chr3 171851368 171851429 -46185729 - L1M1 LINE L1 -855 5447 5386 662 323 69 4 chr3 171851459 171851735 -46185423 - L2 LINE L2 -564 2750 2457 553 291 73 7 chr3 171852540 171852691 -46184467 - MIR SINE MIR -84 178 18 380 238 24 0 chr3 171852812 171852896 -46184262 + MIR SINE MIR 141 226 -36 2392 141 28 94 chr3 171852930 171853028 -46184130 - L1MB8 LINE L1 -6 6172 6069 2546 64 0 16 chr3 171853028 171853342 -46183816 + AluSc SINE Alu 1 309 0 2392 141 28 94 chr3 171853342 171853825 -46183333 - L1MB8 LINE L1 -109 6069 5630 202 351 14 0 chr3 171853916 171853990 -46183168 - MIR SINE MIR -81 181 107 419 336 90 40 chr3 171854007 171854328 -46182830 + L2 LINE L2 2927 3263 -9 24 0 0 0 chr3 171854493 171854517 -46182641 + AT_rich Low_complexity Low_complexity 1 24 0 12910 48 14 0 chr3 171854521 171856917 -46180241 - L1PA5 LINE L1 -7 6147 3727 1786 109 17 38 chr3 171857153 171857446 -46179712 - AluSx SINE Alu 0 312 26 447 268 10 0 chr3 171857648 171857745 -46179413 - MER5A DNA MER1_type -79 110 13 328 36 96 0 chr3 171857837 171857920 -46179238 + (TA)n Simple_repeat Simple_repeat 2 92 0 333 0 0 0 chr3 171857920 171857957 -46179201 + (TG)n Simple_repeat Simple_repeat 2 38 0 337 291 16 8 chr3 171859002 171859129 -46178029 + Charlie8 DNA MER1_type 98 225 -2192 471 292 58 0 chr3 171859720 171859840 -46177318 - L2 LINE L2 -2 3270 3144 271 276 125 17 chr3 171860012 171860236 -46176922 - Charlie8 DNA MER1_type -1033 1384 40 231 176 14 27 chr3 171860441 171860515 -46176643 + CT-rich Low_complexity Low_complexity 2 74 0 5808 130 10 3 chr3 171861415 171862785 -46174373 + L1PB1 LINE L1 4767 6146 -5 583 258 154 18 chr3 171862990 171863222 -46173936 - MIR SINE MIR 0 262 3 719 235 139 47 chr3 171863730 171864112 -46173046 + L1ME3 LINE L1 5753 6168 -2 234 291 108 49 chr3 171864157 171864360 -46172798 - L2 LINE L2 -468 2846 2632 30 0 0 0 chr3 171864937 171864967 -46172191 + AT_rich Low_complexity Low_complexity 1 30 0 1891 176 0 7 chr3 171865181 171865482 -46171676 + AluJo SINE Alu 1 299 -13 274 101 58 14 chr3 171865721 171865790 -46171368 + MER96B DNA MER1_type? 108 179 -238 281 200 167 0 chr3 171865845 171865905 -46171253 - MER58A DNA MER1_type -31 76 7 1311 159 34 4 chr3 171865936 171866169 -46170989 - Tigger3b DNA MER2_type -1 1230 991 * 3861 125 41 37 chr3 171866153 171866913 -46170245 - Tigger3b DNA MER2_type -415 816 54 410 250 0 10 chr3 171866993 171867089 -46170069 + MER96B DNA MER1_type? 323 417 0 199 189 0 0 chr3 171869149 171869186 -46167972 + L2 LINE L2 3277 3313 0 1520 229 64 32 chr3 171869492 171869995 -46167163 + LTR53 LTR ERVL 1 519 0 201 74 0 0 chr3 171871225 171871252 -46165906 + (CCGG)n Simple_repeat Simple_repeat 2 28 0 2144 118 0 3 chr3 171872064 171872360 -46164798 - AluSp SINE Alu -18 295 1 662 276 119 4 chr3 171873005 171873248 -46163910 - Charlie8 DNA MER1_type -2146 271 1 233 275 122 40 chr3 171873494 171873668 -46163490 + MIR SINE MIR 32 218 -44 4382 251 77 74 chr3 171873673 171875357 -46161801 + L2 LINE L2 1217 2905 -409 539 86 29 19 chr3 171875363 171875468 -46161690 + (TTTC)n Simple_repeat Simple_repeat 2 107 0 366 156 0 0 chr3 171875555 171875619 -46161539 + CT-rich Low_complexity Low_complexity 3 66 0 300 216 328 22 chr3 171875731 171875865 -46161293 + L2 LINE L2 3139 3313 0 * 894 292 97 23 chr3 171875864 171876351 -46160807 + L2 LINE L2 2144 2666 -648 390 223 132 33 chr3 171876510 171876631 -46160527 + L2 LINE L2 3133 3265 -7 1257 137 58 26 chr3 171876941 171877152 -46160006 + AluJb SINE Alu 66 286 -26 471 113 0 0 chr3 171877152 171877223 -46159935 + (TGAA)n Simple_repeat Simple_repeat 3 73 0 1257 137 58 26 chr3 171877223 171877237 -46159921 + AluJb SINE Alu 286 298 -14 274 221 117 48 chr3 171877245 171877390 -46159768 + L2 LINE L2 2860 3014 -258 241 263 20 40 chr3 171877760 171877859 -46159299 + L2 LINE L2 3019 3115 -157 185 108 27 0 chr3 171877860 171877897 -46159261 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1578 104 21 0 chr3 171877914 171878155 -46159003 - L1MA4A LINE L1 0 6303 6058 327 277 100 0 chr3 171878494 171878624 -46158534 - L2 LINE L2 -1191 2123 1981 2330 101 0 0 chr3 171878624 171878921 -46158237 + AluSx SINE Alu 2 298 -14 1911 93 85 0 chr3 171878921 171879178 -46157980 + AluSx SINE Alu 33 312 0 829 173 81 0 chr3 171879179 171879364 -46157794 + Tigger6 DNA MER2_type 1153 1352 -245 219 239 43 0 chr3 171880154 171880246 -46156912 + (TA)n Simple_repeat Simple_repeat 1 96 0 9863 28 0 1 chr3 171880254 171881513 -46155645 - L1P LINE L1 -729 5426 4169 309 0 0 0 chr3 171881513 171881550 -46155608 + L1PA4 LINE L1 6112 6151 -4 825 335 80 23 chr3 171881638 171882113 -46155045 - L3 LINE CR1 -861 716 215 29 60 0 0 chr3 171883173 171883223 -46153935 + AT_rich Low_complexity Low_complexity 1 50 0 1675 169 29 11 chr3 171883341 171883620 -46153538 + AluJb SINE Alu 1 284 -28 213 65 0 0 chr3 171883620 171883651 -46153507 + (CATA)n Simple_repeat Simple_repeat 2 32 0 4553 190 54 32 chr3 171883964 171886170 -46150988 + L1MD1 LINE L1 3989 6242 0 209 133 0 44 chr3 171886582 171886627 -46150531 + (CA)n Simple_repeat Simple_repeat 2 44 0 1772 138 115 16 chr3 171888275 171888580 -46148578 - MER1B DNA MER1_type 0 337 3 294 213 33 0 chr3 171888785 171888846 -46148312 + L2 LINE L2 3251 3313 0 23 33 0 0 chr3 171889105 171889135 -46148023 + AT_rich Low_complexity Low_complexity 1 30 0 5777 131 65 12 chr3 171890146 171891144 -46146014 - Tigger2 DNA MER2_type -1 2717 1667 2000 139 21 0 chr3 171891138 171891470 -46145688 - Tigger2 DNA MER2_type -1221 1497 1159 * 544 162 28 92 chr3 171891464 171891606 -46145552 + LTR8A LTR ERV1 595 727 0 * 605 292 0 40 chr3 171891608 171891834 -46145324 + HUERS-P1 LTR ERV1 3 219 -6044 4145 174 53 53 chr3 171891885 171893203 -46143955 + HUERS-P1 LTR ERV1 355 1482 -4464 3243 197 49 82 chr3 171893237 171894275 -46142883 + HUERS-P1 LTR ERV1 1485 2857 -3195 2039 136 10 3 chr3 171894275 171894576 -46142582 + AluSx SINE Alu 1 303 -9 3243 197 49 82 chr3 171894576 171895110 -46142048 + HUERS-P1 LTR ERV1 2857 3407 -2645 261 229 16 0 chr3 171895112 171895173 -46141985 + MER34C LTR ERV1 169 230 -355 11884 174 36 63 chr3 171895208 171898504 -46138654 + LTR8A-int LTR ERV1 1833 6263 0 1948 154 99 12 chr3 171898504 171898597 -46138561 + LTR8A LTR ERV1 1 85 -642 2457 108 37 6 chr3 171898597 171898950 -46138208 + THE1B LTR MaLR 1 364 0 1948 154 99 12 chr3 171898950 171899447 -46137711 + LTR8A LTR ERV1 85 674 -53 6057 145 32 49 chr3 171899497 171900673 -46136485 - Tigger2 DNA MER2_type -1562 1156 1 288 197 0 33 chr3 171900673 171900734 -46136424 + MIR SINE MIR 199 257 -5 1549 205 116 28 chr3 171902724 171903300 -46133858 - MER67C LTR ERV1 -4 706 38 202 174 65 0 chr3 171904717 171904763 -46132395 - L2 LINE L2 0 3313 3265 2382 64 0 29 chr3 171905142 171905454 -46131704 + AluY SINE Alu 1 303 -8 496 268 145 0 chr3 171905954 171906122 -46131036 - MER3 DNA MER1_type 0 209 12 1692 177 20 10 chr3 171906122 171906427 -46130731 + AluJo SINE Alu 1 308 -4 4334 159 18 33 chr3 171907196 171908192 -46128966 + pTR5 LTR ERV1 744 2062 -376 3763 190 55 29 chr3 171908314 171909471 -46127687 + L1MB7 LINE L1 4383 5603 -581 2376 85 0 0 chr3 171909471 171909766 -46127392 + AluY SINE Alu 1 295 -16 3763 190 55 29 chr3 171909766 171910364 -46126794 + L1MB7 LINE L1 5603 6184 0 220 234 0 0 chr3 171911966 171912013 -46125145 - L2 LINE L2 -4 3309 3263 21 36 0 0 chr3 171913226 171913254 -46123904 + AT_rich Low_complexity Low_complexity 1 28 0 1098 193 37 33 chr3 171913290 171913534 -46123624 - MSTB1 LTR MaLR 0 432 188 883 205 47 5 chr3 171914453 171914643 -46122515 - MSTB1 LTR MaLR -259 198 1 472 247 71 12 chr3 171914647 171914817 -46122341 - HAL1 LINE L1 -52 2455 2276 531 324 150 14 chr3 171914821 171915182 -46121976 - MLT1J LTR MaLR -2 509 100 2807 247 101 44 chr3 171915276 171916607 -46120551 - HAL1 LINE L1 -290 2217 812 6876 181 51 12 chr3 171916607 171918700 -46118458 + L1PA13 LINE L1 4018 6150 -13 579 263 103 78 chr3 171918743 171918882 -46118276 + L1MC5 LINE L1 7452 7586 -375 3509 55 2 0 chr3 171918882 171919318 -46117840 + L1PA7 LINE L1 5702 6138 -16 579 263 103 78 chr3 171919318 171919604 -46117554 + L1MC5 LINE L1 7586 7888 -73 1547 184 12 3 chr3 171920032 171920358 -46116800 + L1 LINE L1 4316 4644 -1502 1567 299 105 17 chr3 171920369 171921178 -46115980 + L1MA4A LINE L1 3 882 -5981 1083 158 6 0 chr3 171921178 171921355 -46115803 + L1PB3 LINE L1 5977 6154 0 269 122 61 0 chr3 171921405 171921454 -46115704 + L1ME LINE L1 5542 5593 -528 3213 202 11 1 chr3 171921473 171922196 -46114962 + L1P LINE L1 4629 5358 -788 1374 120 9 22 chr3 171922418 171922643 -46114515 - L1P4 LINE L1 -625 5540 5319 6053 87 22 10 chr3 171922665 171923380 -46113778 - L1PA10 LINE L1 -16 6152 5447 1947 145 13 3 chr3 171923380 171923683 -46113475 - AluJb SINE Alu -1 311 6 6053 87 22 10 chr3 171923683 171924509 -46112649 - L1PA10 LINE L1 -721 5447 4610 24 32 0 0 chr3 171924680 171924711 -46112447 + AT_rich Low_complexity Low_complexity 1 31 0 1950 174 92 3 chr3 171925241 171925598 -46111560 - MSTB LTR MaLR -37 389 1 2312 69 0 39 chr3 171927854 171928159 -46108999 + AluSx SINE Alu 7 299 -13 22 80 0 0 chr3 171928456 171928506 -46108652 + AT_rich Low_complexity Low_complexity 1 50 0 638 273 29 34 chr3 171928885 171929094 -46108064 - MIR SINE MIR -17 245 38 1024 160 21 34 chr3 171931741 171931979 -46105179 + L1MA4A LINE L1 1608 1842 -5021 14953 167 63 30 chr3 171931991 171935167 -46101991 + L1PB1 LINE L1 3 3289 -3573 2192 126 42 22 chr3 171935170 171935526 -46101632 - THE1B LTR MaLR -1 363 1 11216 97 10 22 chr3 171935526 171935855 -46101303 - THE1B-int LTR MaLR 0 1580 1249 17419 31 1 0 chr3 171935855 171938710 -46098448 - L1PA3 LINE L1 -1 6154 3299 11216 97 10 22 chr3 171938710 171939979 -46097179 - THE1B-int LTR MaLR -331 1249 1 1736 146 113 30 chr3 171939979 171940315 -46096843 - THE1B LTR MaLR 0 364 1 11697 194 19 6 chr3 171940315 171940936 -46096222 + L1PB1 LINE L1 3287 3898 -2969 2243 96 0 10 chr3 171940936 171941260 -46095898 + AluSg SINE Alu 1 310 0 11697 194 19 6 chr3 171941260 171942999 -46094159 + L1PB1 LINE L1 3898 5712 -1155 2415 81 7 0 chr3 171942999 171943306 -46093852 - AluY SINE Alu -2 309 1 11697 194 19 6 chr3 171943306 171944478 -46092680 + L1PB1 LINE L1 5712 6867 0 14742 168 24 17 chr3 171944719 171947313 -46089845 + L1MA4A LINE L1 1824 4612 -2407 6478 24 0 0 chr3 171947313 171948064 -46089094 + L1PA3 LINE L1 5403 6155 0 14742 168 24 17 chr3 171948064 171950423 -46086735 + L1MA4A LINE L1 4612 6955 -64 198 354 61 30 chr3 171951165 171951264 -46085894 - L2 LINE L2 -2 3270 3169 270 57 0 0 chr3 171951564 171951599 -46085559 - MADE1 DNA Mariner -45 35 1 390 290 19 0 chr3 171951676 171951783 -46085375 - MER94 DNA DNA -25 109 1 411 174 0 0 chr3 171952232 171952318 -46084840 + (TCCA)n Simple_repeat Simple_repeat 3 88 0 433 308 88 52 chr3 171952391 171952777 -46084381 - MLT1J LTR MaLR -2 509 110 388 294 139 41 chr3 171952899 171953144 -46084014 - L2 LINE L2 -4 3268 3000 192 382 118 17 chr3 171953228 171953524 -46083634 - L2 LINE L2 -467 2847 2522 738 254 23 0 chr3 171953637 171953814 -46083344 - MIR SINE MIR -70 192 12 688 350 73 41 chr3 171953834 171954631 -46082527 - L2 LINE L2 -888 2426 1605 262 367 58 22 chr3 171954638 171954916 -46082242 - L2 LINE L2 -2136 1178 891 243 203 109 0 chr3 171955312 171955376 -46081782 + MIR SINE MIR 79 149 -113 378 234 78 78 chr3 171956489 171956656 -46080502 - MIR SINE MIR -88 174 8 25 31 0 0 chr3 171956662 171956694 -46080464 + AT_rich Low_complexity Low_complexity 1 32 0 338 266 126 70 chr3 171958064 171958278 -46078880 + MLT1J LTR MaLR 234 459 -52 1064 260 71 14 chr3 171958831 171959196 -46077962 + L1MC4a LINE L1 3 388 -6152 1583 148 54 91 chr3 171959196 171959582 -46077576 + L1MC1 LINE L1 5956 6327 -6 559 292 86 30 chr3 171960000 171960327 -46076831 + L1 LINE L1 2784 3157 -2989 2236 106 0 7 chr3 171960327 171960629 -46076529 - AluSx SINE Alu -12 300 1 559 292 86 30 chr3 171960629 171960715 -46076443 + L1 LINE L1 3157 3237 -2909 230 159 0 23 chr3 171960738 171960782 -46076376 + CT-rich Low_complexity Low_complexity 1 43 0 321 280 90 35 chr3 171960786 171960986 -46076172 + L1 LINE L1 3269 3479 -2667 229 188 31 16 chr3 171961171 171961235 -46075923 + L1 LINE L1 3689 3753 -2393 782 224 20 25 chr3 171961342 171961543 -46075615 + MER46A DNA MER2_type 37 236 0 1172 285 96 48 chr3 171961735 171962927 -46074231 + L1MC4a LINE L1 4178 5426 -1114 235 222 10 81 chr3 171963268 171963295 -46073863 + LTR67 LTR ERVL 459 550 -7 283 278 14 0 chr3 171963295 171963367 -46073791 + MLT1K LTR MaLR 509 581 -7 21 0 0 0 chr3 171963401 171963422 -46073736 + AT_rich Low_complexity Low_complexity 1 21 0 738 304 122 31 chr3 171963511 171964106 -46073052 + L1MC4a LINE L1 5661 6309 -233 1855 146 3 44 chr3 171964166 171964487 -46072671 + AluJb SINE Alu 1 308 -4 1743 191 0 7 chr3 171964577 171964881 -46072277 + AluSx SINE Alu 5 306 -6 28 79 0 0 chr3 171965278 171965341 -46071817 + AT_rich Low_complexity Low_complexity 1 63 0 30 27 0 0 chr3 171965871 171965908 -46071250 + AT_rich Low_complexity Low_complexity 1 37 0 244 330 33 11 chr3 171966642 171966733 -46070425 + MIR3 SINE MIR 109 201 -7 375 269 128 54 chr3 171966816 171966965 -46070193 - MIR SINE MIR -100 162 3 21 36 0 0 chr3 171967375 171967403 -46069755 + AT_rich Low_complexity Low_complexity 1 28 0 910 336 81 54 chr3 171967478 171968111 -46069047 - L3 LINE CR1 -24 1553 904 219 239 43 0 chr3 171968724 171968816 -46068342 + (TA)n Simple_repeat Simple_repeat 1 96 0 10280 28 0 1 chr3 171968824 171970083 -46067075 - L1P LINE L1 -729 5426 4169 313 0 0 0 chr3 171970083 171970120 -46067038 + L1PA4 LINE L1 6112 6151 -4 847 335 80 23 chr3 171970208 171970683 -46066475 - L3 LINE CR1 -861 716 215 29 60 0 0 chr3 171971743 171971793 -46065365 + AT_rich Low_complexity Low_complexity 1 50 0 1666 169 29 11 chr3 171971911 171972190 -46064968 + AluJb SINE Alu 1 284 -28 213 65 0 0 chr3 171972190 171972221 -46064937 + (CATA)n Simple_repeat Simple_repeat 2 32 0 4864 190 53 32 chr3 171972534 171974741 -46062417 + L1MD1 LINE L1 3989 6242 0 182 125 0 25 chr3 171975153 171975193 -46061965 + (CA)n Simple_repeat Simple_repeat 2 40 0 1752 141 115 16 chr3 171976846 171977151 -46060007 - MER1B DNA MER1_type 0 337 3 277 229 33 0 chr3 171977356 171977417 -46059741 + L2 LINE L2 3251 3313 0 23 33 0 0 chr3 171977676 171977706 -46059452 + AT_rich Low_complexity Low_complexity 1 30 0 6124 131 65 12 chr3 171978717 171979715 -46057443 - Tigger2 DNA MER2_type -1 2717 1667 2115 139 21 0 chr3 171979709 171980041 -46057117 - Tigger2 DNA MER2_type -1221 1497 1159 * 588 155 28 92 chr3 171980035 171980177 -46056981 + LTR8A LTR ERV1 595 727 0 * 676 292 0 40 chr3 171980179 171980405 -46056753 + HUERS-P1 LTR ERV1 3 219 -6044 4426 198 84 54 chr3 171980456 171981774 -46055384 + HUERS-P1 LTR ERV1 355 1615 -4648 3629 196 49 82 chr3 171981808 171982846 -46054312 + LTR8A-int LTR ERV1 1485 2857 -3195 2068 133 10 3 chr3 171982846 171983155 -46054003 + AluSx SINE Alu 1 311 -1 3629 196 49 82 chr3 171983155 171983689 -46053469 + LTR8A-int LTR ERV1 2857 3407 -2645 261 229 16 0 chr3 171983691 171983752 -46053406 + MER34C LTR ERV1 169 230 -355 11867 174 35 63 chr3 171983787 171987087 -46050071 + LTR8A-int LTR ERV1 1833 6263 0 1948 154 99 12 chr3 171987087 171987180 -46049978 + LTR8A LTR ERV1 1 85 -642 2457 108 37 6 chr3 171987180 171987533 -46049625 + THE1B LTR MaLR 1 364 0 1948 154 99 12 chr3 171987533 171988030 -46049128 + LTR8A LTR ERV1 85 674 -53 6105 142 32 49 chr3 171988080 171989256 -46047902 - Tigger2 DNA MER2_type -1562 1156 1 288 197 0 33 chr3 171989256 171989317 -46047841 + MIR SINE MIR 199 257 -5 1549 205 116 28 chr3 171991323 171991899 -46045259 - MER67C LTR ERV1 -4 706 38 202 174 65 0 chr3 171993316 171993362 -46043796 - L2 LINE L2 0 3313 3265 2382 64 0 29 chr3 171993741 171994053 -46043105 + AluY SINE Alu 1 303 -8 496 268 145 0 chr3 171994553 171994721 -46042437 - MER3 DNA MER1_type 0 209 12 1692 177 20 10 chr3 171994721 171995026 -46042132 + AluJo SINE Alu 1 308 -4 5685 110 99 113 chr3 171995794 171997392 -46039766 + pTR5 LTR ERV1 589 2438 0 2300 100 0 0 chr3 171997392 171997691 -46039467 - AluSx SINE Alu -13 299 1 194 238 0 0 chr3 171997931 171997973 -46039185 - MIR SINE MIR -3 259 218 1169 121 5 21 chr3 171998907 171999097 -46038061 + AluSg/x SINE Alu 120 306 -6 325 290 97 32 chr3 171999881 172000036 -46037122 + MLT1L LTR MaLR 121 285 -330 21 0 0 0 chr3 172001980 172002001 -46035157 + GC_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr3 172002366 172002398 -46034760 + GC_rich Low_complexity Low_complexity 1 32 0 2174 69 10 39 chr3 172003574 172003880 -46033278 - AluY SINE Alu -14 297 1 1616 169 17 0 chr3 172004031 172004321 -46032837 - AluJo SINE Alu -15 297 3 26 30 0 0 chr3 172004326 172004359 -46032799 + AT_rich Low_complexity Low_complexity 1 33 0 215 158 26 0 chr3 172004524 172004562 -46032596 + MIR SINE MIR 57 95 -113 24 103 0 0 chr3 172004922 172005009 -46032149 + AT_rich Low_complexity Low_complexity 1 87 0 258 257 71 14 chr3 172005194 172005264 -46031894 - L2 LINE L2 -19 3294 3221 325 354 146 0 chr3 172005639 172005803 -46031355 + MER91A DNA MER1_type 8 195 -1 25 0 0 0 chr3 172007956 172007981 -46029177 + AT_rich Low_complexity Low_complexity 1 25 0 223 254 17 0 chr3 172008147 172008206 -46028952 + (CTCG)n Simple_repeat Simple_repeat 1 60 0 234 333 38 0 chr3 172010318 172010423 -46026735 - MIR3 SINE MIR -2 206 98 * 275 213 37 74 chr3 172010415 172010523 -46026635 - L2 LINE L2 0 3313 3210 181 283 33 17 chr3 172010501 172010561 -46026597 - MIR SINE MIR -94 114 54 * 754 234 24 6 chr3 172012081 172012248 -46024910 + MIR3 SINE MIR 33 202 -6 300 91 0 0 chr3 172012347 172012391 -46024767 + (GGA)n Simple_repeat Simple_repeat 3 46 0 828 206 160 23 chr3 172013037 172013299 -46023859 - L1MC4a LINE L1 -1925 5883 5586 413 234 81 0 chr3 172013721 172013832 -46023326 - MER94 DNA DNA -1 133 14 239 54 27 0 chr3 172014083 172014120 -46023038 + (CA)n Simple_repeat Simple_repeat 2 39 0 365 234 13 0 chr3 172015558 172015635 -46021523 + MLT1I LTR MaLR 330 407 -2 1597 188 46 38 chr3 172015869 172016237 -46020921 + MLT1A2 LTR MaLR 4 374 0 896 191 125 0 chr3 172016840 172017008 -46020150 + MER5A DNA MER1_type 1 189 0 529 278 105 0 chr3 172017340 172017473 -46019685 - MIR SINE MIR -90 172 26 2068 123 3 10 chr3 172017657 172017949 -46019209 - AluSx SINE Alu -21 291 2 1403 293 90 15 chr3 172018025 172018364 -46018794 + L2 LINE L2 2261 2573 -740 2961 85 3 3 chr3 172018364 172018728 -46018430 + THE1B LTR MaLR 1 364 0 1403 293 90 15 chr3 172018728 172019177 -46017981 + L2 LINE L2 2573 3104 -209 997 239 79 97 chr3 172019201 172019719 -46017439 + MER34 LTR ERV1 34 542 0 429 253 135 47 chr3 172019722 172019892 -46017266 + L2 LINE L2 3129 3313 0 455 263 221 16 chr3 172021139 172021329 -46015829 + MIR SINE MIR 12 240 -22 3846 153 76 29 chr3 172021821 172022236 -46014922 - Tigger6a DNA MER2_type -515 1082 615 2199 85 78 0 chr3 172022236 172022519 -46014639 - AluSx SINE Alu -7 305 1 3846 153 76 29 chr3 172022519 172022854 -46014304 - Tigger6a DNA MER2_type -982 615 297 326 247 47 13 chr3 172022980 172023130 -46014028 - L1MC4 LINE L1 -986 7056 6902 309 307 202 40 chr3 172023689 172024163 -46012995 + L2 LINE L2 2697 3252 -20 1751 262 173 16 chr3 172025211 172025906 -46011252 + L2 LINE L2 2253 3049 -264 274 258 118 21 chr3 172025976 172026069 -46011089 - MER94 DNA DNA 0 134 33 343 271 253 12 chr3 172026099 172026269 -46010889 + L2 LINE L2 3103 3313 0 380 130 51 0 chr3 172026376 172026514 -46010644 + (TA)n Simple_repeat Simple_repeat 1 145 0 228 226 0 19 chr3 172026514 172026567 -46010591 + MER5B DNA MER1_type 123 174 -4 214 26 79 0 chr3 172026786 172026824 -46010334 + A-rich Low_complexity Low_complexity 3 43 0 281 164 0 55 chr3 172027028 172027083 -46010075 - L1ME LINE L1 -446 5675 5624 1012 141 68 6 chr3 172027331 172027508 -46009650 + MER2 DNA MER2_type 24 211 -134 220 234 140 56 chr3 172027745 172027852 -46009306 - MER5A DNA MER1_type -35 154 39 23 0 0 0 chr3 172028715 172028738 -46008420 + AT_rich Low_complexity Low_complexity 1 23 0 279 178 0 0 chr3 172028786 172028871 -46008287 - Alu SINE Alu 0 320 236 1218 203 31 45 chr3 172028875 172029060 -46008098 - AluJo SINE Alu 0 303 122 2249 84 0 14 chr3 172029060 172029357 -46007801 + AluY SINE Alu 1 293 -18 1218 203 31 45 chr3 172029357 172029478 -46007680 - AluJo SINE Alu -181 122 1 1862 156 20 7 chr3 172030081 172030382 -46006776 + AluSx SINE Alu 1 305 -7 1607 159 14 22 chr3 172030795 172031071 -46006087 - AluJb SINE Alu -31 281 8 413 278 80 20 chr3 172031337 172031488 -46005670 - MLT1J LTR MaLR -45 466 307 400 297 50 62 chr3 172032069 172032331 -46004827 + MLT1G LTR MaLR 19 336 -251 718 188 109 100 chr3 172032415 172032654 -46004504 + MLT1G LTR MaLR 315 590 0 317 256 23 23 chr3 172032711 172032797 -46004361 + L1MEc LINE L1 2147 2232 -4164 253 220 0 20 chr3 172033311 172033361 -46003797 + L2 LINE L2 3265 3313 0 31 44 0 0 chr3 172034276 172034321 -46002837 + GC_rich Low_complexity Low_complexity 1 45 0 194 310 28 99 chr3 172035929 172036071 -46001087 - L2 LINE L2 -4 3268 3137 23 0 0 0 chr3 172036226 172036249 -46000909 + AT_rich Low_complexity Low_complexity 1 23 0 205 119 24 24 chr3 172039344 172039386 -45997772 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 227 265 0 0 chr3 172041026 172041075 -45996083 + L3 LINE CR1 1510 1558 -19 22 0 0 0 chr3 172042213 172042235 -45994923 + AT_rich Low_complexity Low_complexity 1 22 0 991 140 207 5 chr3 172042740 172042933 -45994225 - MER46A DNA MER2_type 0 236 5 1990 91 58 4 chr3 172043878 172044152 -45993006 - AluSp SINE Alu -22 291 3 22 94 0 0 chr3 172046242 172046306 -45990852 + AT_rich Low_complexity Low_complexity 1 64 0 1647 171 57 13 chr3 172047529 172047828 -45989330 + AluJb SINE Alu 1 312 0 259 289 165 37 chr3 172048596 172048814 -45988344 + L2 LINE L2 2364 2609 -705 205 335 94 53 chr3 172048943 172049113 -45988045 + L2 LINE L2 2678 2854 -460 237 182 0 18 chr3 172051873 172051928 -45985230 + (TTATA)n Simple_repeat Simple_repeat 5 58 0 361 152 30 0 chr3 172052272 172052338 -45984820 - AluSp/q SINE Alu -10 293 226 23 0 0 0 chr3 172052530 172052553 -45984605 + AT_rich Low_complexity Low_complexity 1 23 0 1733 154 0 39 chr3 172054620 172054940 -45982218 - AluJo SINE Alu 0 318 10 213 219 0 0 chr3 172055246 172055287 -45981871 + T-rich Low_complexity Low_complexity 1 41 0 1341 176 36 7 chr3 172056955 172057234 -45979924 + Tigger1 DNA MER2_type 1 287 -2131 11565 109 50 4 chr3 172057236 172059126 -45978032 + Tigger1 DNA MER2_type 435 2412 -6 23 33 0 0 chr3 172059488 172059518 -45977640 + AT_rich Low_complexity Low_complexity 1 30 0 1616 151 3 58 chr3 172059518 172059830 -45977328 - AluJo SINE Alu -1 311 17 630 26 0 0 chr3 172061448 172061524 -45975634 + (TGG)n Simple_repeat Simple_repeat 2 77 0 24 0 0 0 chr3 172061578 172061602 -45975556 + AT_rich Low_complexity Low_complexity 1 24 0 632 235 186 0 chr3 172061658 172061841 -45975317 + MIR SINE MIR 46 262 0 2621 40 0 0 chr3 172063151 172063451 -45973707 + AluY SINE Alu 1 300 -11 672 264 41 20 chr3 172063536 172063733 -45973425 - MIR SINE MIR -56 206 6 21 0 0 0 chr3 172066134 172066155 -45971003 + AT_rich Low_complexity Low_complexity 1 21 0 2105 104 7 29 chr3 172066436 172066743 -45970415 - AluSx SINE Alu -12 300 1 867 191 75 0 chr3 172066743 172066916 -45970242 + MER46A DNA MER2_type 51 236 0 1620 169 54 0 chr3 172066998 172067277 -45969881 + AluJb SINE Alu 1 294 -18 203 237 40 92 chr3 172068048 172068124 -45969034 + MIR SINE MIR 64 135 -73 252 270 0 14 chr3 172069833 172069881 -45967277 + (TAG)n Simple_repeat Simple_repeat 2 50 -24 1820 148 197 14 chr3 172069881 172070308 -45966850 + MLT1D LTR MaLR 1 505 0 252 270 0 14 chr3 172070308 172070333 -45966825 + (TAG)n Simple_repeat Simple_repeat 50 74 0 21 0 0 0 chr3 172070359 172070380 -45966778 + AT_rich Low_complexity Low_complexity 1 21 0 1642 189 115 10 chr3 172070928 172071177 -45965981 - MLT1C LTR MaLR -1 466 245 1873 129 61 3 chr3 172071177 172071472 -45965686 - AluSx SINE Alu 0 312 1 1642 189 115 10 chr3 172071472 172071639 -45965519 - MLT1C LTR MaLR -222 245 6 24 32 0 0 chr3 172072782 172072813 -45964345 + AT_rich Low_complexity Low_complexity 1 31 0 651 293 90 24 chr3 172074869 172074964 -45962194 - MLT1L LTR MaLR -221 394 307 279 0 0 0 chr3 172074964 172074995 -45962163 + (TG)n Simple_repeat Simple_repeat 2 32 0 651 293 90 24 chr3 172074995 172075234 -45961924 - MLT1L LTR MaLR -308 307 38 212 237 85 0 chr3 172075308 172075367 -45961791 + MER5A DNA MER1_type 38 101 -88 1014 266 18 0 chr3 172075601 172075819 -45961339 - MIR SINE MIR -30 232 11 1857 170 10 10 chr3 172075981 172076281 -45960877 - AluJb SINE Alu -12 300 1 259 216 0 36 chr3 172077175 172077220 -45959938 + (ATGGTG)n Simple_repeat Simple_repeat 5 50 -88 1914 132 49 126 chr3 172077220 172077690 -45959468 - Tigger2a DNA MER2_type 0 434 1 259 216 0 36 chr3 172077690 172077783 -45959375 + (ATGGTG)n Simple_repeat Simple_repeat 50 138 0 283 211 84 32 chr3 172078128 172078223 -45958935 + MER91C DNA MER1_type 34 133 -7 2020 148 46 6 chr3 172078633 172078984 -45958174 + MLT1A1 LTR MaLR 1 365 0 294 256 0 13 chr3 172079126 172079204 -45957954 - MIR SINE MIR -1 261 185 228 223 98 27 chr3 172079321 172079505 -45957653 - Charlie7 DNA MER1_type -3 2609 2413 27 49 0 0 chr3 172079513 172079554 -45957604 + AT_rich Low_complexity Low_complexity 1 41 0 1563 192 82 46 chr3 172079594 172080176 -45956982 - Charlie7 DNA MER1_type -396 2216 1614 1181 192 18 0 chr3 172080297 172080516 -45956642 - MER58A DNA MER1_type 0 224 2 302 348 71 5 chr3 172080520 172080704 -45956454 - Charlie7 DNA MER1_type -2255 357 162 23 78 0 0 chr3 172080724 172080775 -45956383 + AT_rich Low_complexity Low_complexity 1 51 0 419 234 160 32 chr3 172081936 172082071 -45955087 + MIR3 SINE MIR 28 184 -24 357 191 170 50 chr3 172084085 172084226 -45952932 - L1MC4a LINE L1 -1894 5914 5757 409 229 17 42 chr3 172084249 172084367 -45952791 - L1MC4a LINE L1 -2154 5654 5540 186 43 0 0 chr3 172084385 172084408 -45952750 + (A)n Simple_repeat Simple_repeat 1 23 0 479 295 133 40 chr3 172084533 172084811 -45952347 + L2 LINE L2 3005 3308 -5 409 203 16 57 chr3 172086890 172087013 -45950145 - L2 LINE L2 -1 3312 3195 222 258 30 15 chr3 172088337 172088403 -45948755 + CT-rich Low_complexity Low_complexity 4 70 0 260 244 0 23 chr3 172089930 172090016 -45947142 + L1MC5 LINE L1 7824 7907 -54 22 0 0 0 chr3 172090018 172090040 -45947118 + AT_rich Low_complexity Low_complexity 1 22 0 945 222 0 0 chr3 172090118 172090289 -45946869 + FAM SINE Alu 1 171 -4 297 264 219 22 chr3 172090298 172090476 -45946682 - MIR SINE MIR -2 260 48 212 306 201 15 chr3 172090559 172090693 -45946465 - MER5B DNA MER1_type 0 178 20 231 36 0 0 chr3 172091464 172091492 -45945666 + (CA)n Simple_repeat Simple_repeat 2 29 0 454 306 0 8 chr3 172092340 172092474 -45944684 + MIR SINE MIR 117 249 -13 3358 183 23 17 chr3 172092492 172093275 -45943883 + L1 LINE L1 4122 4909 -1237 6133 91 20 0 chr3 172093281 172094449 -45942709 + L1PA16 LINE L1 4972 6157 -9 369 0 0 0 chr3 172094450 172094493 -45942665 + (CA)n Simple_repeat Simple_repeat 1 84 0 369 0 0 0 chr3 172094493 172094534 -45942624 + (CA)n Simple_repeat Simple_repeat 2 42 0 472 257 138 25 chr3 172095304 172095557 -45941601 + MLT1K LTR MaLR 1 354 -234 312 182 15 0 chr3 172095646 172095712 -45941446 + MLT1K LTR MaLR 522 588 0 6423 40 10 1 chr3 172095718 172096512 -45940646 + L1PA7 LINE L1 5343 6143 -11 1861 214 68 39 chr3 172096599 172096828 -45940330 + MLT1F LTR MaLR 3 224 -318 396 0 0 0 chr3 172096828 172096872 -45940286 + (CA)n Simple_repeat Simple_repeat 2 45 0 1861 214 68 39 chr3 172096872 172097160 -45939998 + MLT1F LTR MaLR 224 535 -7 814 221 108 36 chr3 172097668 172097863 -45939295 + MER3 DNA MER1_type 1 209 0 4605 126 29 24 chr3 172099375 172100749 -45936409 + pTR5 LTR ERV1 743 2438 0 224 163 0 20 chr3 172101266 172101315 -45935843 + CT-rich Low_complexity Low_complexity 3 50 0 21 0 0 0 chr3 172101762 172101783 -45935375 + AT_rich Low_complexity Low_complexity 1 21 0 1107 160 39 19 chr3 172101900 172102106 -45935052 - AluJo SINE Alu -2 310 101 252 252 117 19 chr3 172102157 172102260 -45934898 - MIR SINE MIR -69 193 81 2575 162 19 21 chr3 172103543 172103970 -45933188 - MSTB LTR MaLR 0 426 1 285 280 170 0 chr3 172104005 172104105 -45933053 - MIR3 SINE MIR -54 154 38 2700 202 6 24 chr3 172105812 172106346 -45930812 + Charlie1a DNA MER1_type 27 550 -905 827 242 194 59 chr3 172106377 172106886 -45930272 - MLT1L LTR MaLR 0 615 38 223 271 14 14 chr3 172106948 172107018 -45930140 + MER5A DNA MER1_type 1 70 -119 322 246 0 7 chr3 172107018 172107137 -45930021 - MER5A DNA MER1_type -8 181 6 182 377 0 29 chr3 172107535 172107604 -45929554 - L2 LINE L2 -371 2942 2876 607 146 97 151 chr3 172107696 172107748 -45929410 + MER5B DNA MER1_type 1 54 -124 1954 150 10 0 chr3 172107748 172108042 -45929116 + AluJb SINE Alu 1 297 -15 607 146 97 151 chr3 172108042 172108174 -45928984 + MER5B DNA MER1_type 54 175 -3 2212 93 10 0 chr3 172111346 172111637 -45925521 - AluSx SINE Alu -18 294 1 486 180 0 23 chr3 172111670 172111798 -45925360 + GA-rich Low_complexity Low_complexity 3 127 0 776 125 0 0 chr3 172112184 172112296 -45924862 + MSTB1 LTR MaLR 1 112 -320 1352 125 5 0 chr3 172112317 172112509 -45924649 + MSTB1 LTR MaLR 227 419 -13 365 207 0 69 chr3 172112536 172112652 -45924506 + L1ME LINE L1 5713 5820 -301 238 291 63 16 chr3 172112663 172112790 -45924368 + L1MCc LINE L1 23 155 -6268 331 336 48 0 chr3 172112803 172112949 -45924209 - L1M3e LINE L1 -6579 451 299 1349 255 115 44 chr3 172113010 172113138 -45924020 - L1MC3 LINE L1 -1504 6281 6163 2769 56 80 39 chr3 172113138 172113528 -45923630 - L1PA8 LINE L1 -2 6170 5765 1349 255 115 44 chr3 172113528 172113964 -45923194 - L1MC3 LINE L1 -1622 6163 5677 3356 148 32 2 chr3 172113964 172114499 -45922659 + MER34C LTR ERV1 35 585 0 1633 189 28 79 chr3 172114504 172114840 -45922318 - L1MC3 LINE L1 -498 5668 5380 2168 93 0 4 chr3 172114840 172115120 -45922038 - AluY SINE Alu -32 279 1 1633 189 28 79 chr3 172115120 172115411 -45921747 - L1MC3 LINE L1 -786 5380 5076 753 164 9 140 chr3 172115412 172115626 -45921532 - MER20 DNA MER1_type 0 219 34 715 133 0 0 chr3 172115673 172115771 -45921387 - AluSg SINE Alu -211 99 2 3828 215 60 73 chr3 172115776 172115911 -45921247 - L1MC3 LINE L1 -1087 5059 4924 1626 216 83 9 chr3 172115911 172116249 -45920909 + MLT1A1 LTR MaLR 1 363 -2 3828 215 60 73 chr3 172116249 172117224 -45919934 - L1MC3 LINE L1 -1222 4924 3967 2101 107 45 10 chr3 172117224 172117515 -45919643 - AluSq SINE Alu -12 301 1 3828 215 60 73 chr3 172117515 172117728 -45919430 - L1MC3 LINE L1 -2179 3967 3753 1734 231 54 82 chr3 172117834 172118336 -45918822 + L1MD3 LINE L1 6607 7093 -949 198 118 0 0 chr3 172118336 172118370 -45918788 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1734 231 54 82 chr3 172118370 172118576 -45918582 + L1MD3 LINE L1 7093 7303 -739 24 0 0 0 chr3 172118605 172118629 -45918529 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr3 172118741 172118773 -45918385 + AT_rich Low_complexity Low_complexity 1 32 0 792 208 17 23 chr3 172119242 172119415 -45917743 - MIR SINE MIR -33 229 58 504 211 112 20 chr3 172119400 172119578 -45917580 - MIR SINE MIR -33 229 41 * 2100 110 0 7 chr3 172123367 172123682 -45913476 - AluSg SINE Alu 0 313 1 207 0 0 0 chr3 172124122 172124145 -45913013 + (TA)n Simple_repeat Simple_repeat 2 24 0 1821 148 10 10 chr3 172124145 172124450 -45912708 - AluJb SINE Alu -7 305 1 2571 205 34 37 chr3 172124732 172125248 -45911910 - L1MCc LINE L1 -4851 1194 806 2399 93 0 0 chr3 172125248 172125549 -45911609 - AluSg SINE Alu -5 305 5 2571 205 34 37 chr3 172125549 172125917 -45911241 - L1MCc LINE L1 -5239 806 438 279 266 38 0 chr3 172126002 172126081 -45911077 - L1MCc LINE L1 -5482 563 482 1482 150 25 0 chr3 172126097 172126337 -45910821 - Tigger7 DNA MER2_type 0 2487 2242 561 42 0 0 chr3 172126342 172126414 -45910744 + (CTATA)n Simple_repeat Simple_repeat 2 73 0 1182 264 79 42 chr3 172126467 172126925 -45910233 - L1MCc LINE L1 -5565 480 6 1525 166 139 47 chr3 172126929 172127115 -45910043 - LTR54B LTR ERV1 -4 494 327 1783 154 7 7 chr3 172127115 172127395 -45909763 + AluJo SINE Alu 15 294 -18 1525 166 139 47 chr3 172127395 172127660 -45909498 - LTR54B LTR ERV1 -171 327 1 896 301 69 26 chr3 172127691 172127705 -45909453 + L1MC4a LINE L1 5420 5432 -2376 1664 184 0 17 chr3 172127705 172128004 -45909154 + AluJo SINE Alu 1 294 -18 896 301 69 26 chr3 172128004 172128454 -45908704 + L1MC4a LINE L1 5432 5904 -1904 365 314 10 0 chr3 172128892 172128994 -45908164 + L2 LINE L2 3166 3268 -4 626 261 57 9 chr3 172129498 172129690 -45907468 - MIR SINE MIR -61 201 5 776 280 162 52 chr3 172130293 172131337 -45905821 + L2 LINE L2 2100 3255 -58 242 154 0 0 chr3 172131511 172131550 -45905608 + L2 LINE L2 3268 3306 -7 315 229 145 0 chr3 172132899 172132982 -45904176 - MIR3 SINE MIR -6 202 108 24 32 0 0 chr3 172133654 172133685 -45903473 + AT_rich Low_complexity Low_complexity 1 31 0 286 264 47 23 chr3 172133750 172133879 -45903279 + L1ME LINE L1 5687 5818 -303 193 159 32 16 chr3 172134270 172134333 -45902825 + (TTCA)n Simple_repeat Simple_repeat 3 66 0 1262 97 11 38 chr3 172134598 172134620 -45902538 + AluSg/x SINE Alu 116 137 -172 2375 79 0 0 chr3 172134620 172134911 -45902247 + AluY SINE Alu 3 293 -18 1262 97 11 38 chr3 172134911 172135073 -45902085 + AluSg/x SINE Alu 137 295 -14 1104 227 182 3 chr3 172135073 172135626 -45901532 - LTR50 LTR ERVL -49 746 1 285 294 0 46 chr3 172135664 172135773 -45901385 - L2 LINE L2 -300 2972 2869 263 233 47 12 chr3 172136548 172136634 -45900524 - L1M4 LINE L1 -1491 4655 4567 1585 276 107 103 chr3 172136635 172137037 -45900121 + L2 LINE L2 1836 2235 -1037 375 23 0 0 chr3 172137037 172137081 -45900077 + (CA)n Simple_repeat Simple_repeat 2 45 0 1585 276 107 103 chr3 172137081 172137176 -45899982 + L2 LINE L2 2235 2328 -944 675 174 0 0 chr3 172137176 172137274 -45899884 + FRAM SINE Alu 49 146 -30 1585 276 107 103 chr3 172137274 172137470 -45899688 + L2 LINE L2 2328 2522 -750 2188 100 0 10 chr3 172137470 172137770 -45899388 - AluY SINE Alu -14 297 1 1585 276 107 103 chr3 172137770 172138389 -45898769 + L2 LINE L2 2522 3271 -1 250 373 57 44 chr3 172139598 172139756 -45897402 - MIR3 SINE MIR -33 175 16 187 250 21 21 chr3 172141076 172141124 -45896034 + L2 LINE L2 3220 3267 -5 290 288 45 18 chr3 172141802 172141913 -45895245 + MIR SINE MIR 58 171 -91 579 330 97 38 chr3 172142302 172142745 -45894413 - MLT1K LTR MaLR -18 570 102 2399 79 0 0 chr3 172143582 172143887 -45893271 + AluY SINE Alu 1 305 -6 429 311 110 14 chr3 172144249 172144468 -45892690 - MIR SINE MIR -3 259 20 270 247 56 11 chr3 172144595 172144684 -45892474 + L2 LINE L2 3219 3311 -2 24 0 0 0 chr3 172144897 172144921 -45892237 + AT_rich Low_complexity Low_complexity 1 24 0 1440 154 70 14 chr3 172145033 172145318 -45891840 - MER33 DNA MER1_type -22 302 2 1915 88 0 8 chr3 172145700 172145974 -45891184 - AluSx SINE Alu 0 308 37 340 297 0 20 chr3 172146570 172146644 -45890514 + (CCA)n Simple_repeat Simple_repeat 1 74 -25 1440 192 112 13 chr3 172146644 172146956 -45890202 - MER2 DNA MER2_type -1 343 1 340 297 0 20 chr3 172146956 172146982 -45890176 + (CCA)n Simple_repeat Simple_repeat 74 99 0 318 212 45 0 chr3 172147578 172147644 -45889514 + MIR SINE MIR 82 150 -112 387 216 0 41 chr3 172147747 172147844 -45889314 - MIR SINE MIR -66 196 104 2850 98 32 20 chr3 172148145 172148584 -45888574 + MLT2A1 LTR ERVL 1 444 0 215 163 20 20 chr3 172149841 172149890 -45887268 - L3 LINE CR1 -3 1574 1526 305 272 105 44 chr3 172150089 172150171 -45886987 - Charlie8 DNA MER1_type -220 121 29 4300 147 33 47 chr3 172150171 172150316 -45886842 + LTR39 LTR ERV1 1 147 -636 2095 112 14 3 chr3 172150316 172150611 -45886547 + AluSx SINE Alu 3 300 -12 4300 147 33 47 chr3 172150611 172151259 -45885899 + LTR39 LTR ERV1 147 783 0 305 272 105 44 chr3 172151259 172151290 -45885868 - Charlie8 DNA MER1_type -312 29 1 203 260 41 27 chr3 172151305 172151378 -45885780 - MIR3 SINE MIR -53 155 82 1079 278 140 5 chr3 172151756 172152191 -45884967 - L2 LINE L2 -4 3309 2816 1441 144 103 15 chr3 172153514 172153777 -45883381 + AluJb SINE Alu 1 286 -26 2142 123 10 0 chr3 172154107 172154400 -45882758 + AluSc SINE Alu 3 298 -11 245 216 31 124 chr3 172154405 172154599 -45882559 - HAL1b LINE L1 -130 1218 1043 1061 140 0 0 chr3 172154876 172155033 -45882125 + Tigger6 DNA MER2_type 2 158 -925 1573 113 53 8 chr3 172155133 172155380 -45881778 + L1PA15 LINE L1 5907 6164 -1 1529 184 47 22 chr3 172155380 172155481 -45881677 + MLT1A1 LTR MaLR 34 131 -234 4944 108 16 46 chr3 172155481 172155844 -45881314 - MER4E LTR ERV1 0 779 407 2264 116 0 0 chr3 172155844 172156147 -45881011 + AluSx SINE Alu 1 303 -9 4944 108 16 46 chr3 172156147 172156586 -45880572 - MER4E LTR ERV1 -372 407 1 1529 184 47 22 chr3 172156586 172156805 -45880353 + MLT1A1 LTR MaLR 131 362 -3 1032 143 0 0 chr3 172157410 172157628 -45879530 + (TA)n Simple_repeat Simple_repeat 1 218 0 246 128 0 0 chr3 172157629 172157668 -45879490 + (CATA)n Simple_repeat Simple_repeat 4 42 0 356 289 0 0 chr3 172157669 172157759 -45879399 - L1MC4 LINE L1 -1339 6703 6614 341 303 0 0 chr3 172157707 172157796 -45879362 + L1MC4 LINE L1 6614 6702 -1340 * 306 271 47 0 chr3 172157765 172157850 -45879308 - L1MC4 LINE L1 -1339 6703 6615 * 282 219 0 0 chr3 172157855 172157919 -45879239 + (TA)n Simple_repeat Simple_repeat 2 65 0 279 244 23 0 chr3 172157921 172158007 -45879151 - L1MC4 LINE L1 -1341 6701 6614 217 244 0 0 chr3 172158011 172158056 -45879102 + (TATG)n Simple_repeat Simple_repeat 3 47 0 596 291 138 24 chr3 172158227 172158516 -45878642 - MER102a DNA MER1_type -8 322 1 21 36 0 0 chr3 172159144 172159172 -45877986 + AT_rich Low_complexity Low_complexity 1 28 0 569 212 0 45 chr3 172159172 172159304 -45877854 - FLAM_C SINE Alu -17 126 1 1976 126 4 0 chr3 172159854 172160157 -45877001 - AluSg SINE Alu 0 304 1 26 30 0 0 chr3 172160627 172160660 -45876498 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr3 172161003 172161025 -45876133 + AT_rich Low_complexity Low_complexity 1 22 0 423 248 131 67 chr3 172161043 172161495 -45875663 - L1ME4a LINE L1 -217 5904 5398 252 207 103 0 chr3 172161667 172161725 -45875433 - MLT1K LTR MaLR -2 586 523 1344 164 6 104 chr3 172162617 172162831 -45874327 - AluJo SINE Alu -10 302 131 180 0 0 0 chr3 172162831 172162851 -45874307 + (TA)n Simple_repeat Simple_repeat 2 21 0 1344 164 6 104 chr3 172162851 172162971 -45874187 - AluJo SINE Alu -181 131 1 200 310 42 14 chr3 172164563 172164634 -45872524 - MIR3 SINE MIR -135 73 1 353 230 72 129 chr3 172165294 172165711 -45871447 - L1ME4a LINE L1 -23 6098 5706 4649 225 44 14 chr3 172165825 172166950 -45870208 - L1MC4a LINE L1 -11 7797 6639 2251 128 3 50 chr3 172167056 172167438 -45869720 + THE1B LTR MaLR 1 364 0 311 198 38 9 chr3 172167442 172167548 -45869610 - L1M4 LINE L1 -3181 2965 2857 2165 91 0 17 chr3 172167553 172167850 -45869308 + AluY SINE Alu 11 302 -9 1520 176 62 0 chr3 172168324 172168597 -45868561 - L1PA16 LINE L1 -19 6147 5858 798 213 11 16 chr3 172168598 172168786 -45868372 + L1PA16 LINE L1 5968 6154 -12 2307 87 38 29 chr3 172168797 172169142 -45868016 - L1PA16 LINE L1 -295 5871 5524 443 214 34 11 chr3 172169468 172169557 -45867601 + MER69 DNA AcHobo 2 92 -2434 29 0 0 0 chr3 172169628 172169657 -45867501 + AT_rich Low_complexity Low_complexity 1 29 0 382 252 36 20 chr3 172169674 172169829 -45867329 + MER69 DNA AcHobo 214 1551 -975 1164 235 129 8 chr3 172169872 172170268 -45866890 + MER69 DNA AcHobo 1657 2100 -426 296 351 50 20 chr3 172170330 172170532 -45866626 + L2 LINE L2 1959 2166 -1148 506 355 26 0 chr3 172170557 172170709 -45866449 - L2 LINE L2 0 3272 3117 411 305 23 0 chr3 172171114 172171245 -45865913 - MER94 DNA DNA 0 134 1 225 264 0 0 chr3 172171613 172171666 -45865492 + L3 LINE CR1 1523 1575 -2 1810 256 120 58 chr3 172171760 172171911 -45865247 + L1ME2 LINE L1 142 282 -5923 2457 160 34 0 chr3 172171911 172172354 -45864804 + L1MC1 LINE L1 5870 6327 -6 1810 256 120 58 chr3 172172354 172173054 -45864104 + L1ME2 LINE L1 282 1046 -5159 25 0 0 0 chr3 172173075 172173100 -45864058 + AT_rich Low_complexity Low_complexity 1 25 0 452 219 39 8 chr3 172174029 172174157 -45863001 + L1ME2 LINE L1 1033 1164 -5054 * 710 295 60 17 chr3 172174133 172174547 -45862611 + L1ME2 LINE L1 1732 2163 -4233 2051 253 46 9 chr3 172174570 172175202 -45861956 + L1ME2 LINE L1 4821 5481 -743 2012 242 64 33 chr3 172175206 172175875 -45861283 + L1ME2 LINE L1 5534 6223 -10 23 54 0 0 chr3 172176240 172176277 -45860881 + AT_rich Low_complexity Low_complexity 1 37 0 1807 151 53 0 chr3 172176327 172176612 -45860546 + AluSx SINE Alu 1 300 -12 2152 86 0 0 chr3 172176637 172176945 -45860213 + AluY SINE Alu 1 308 0 234 267 0 33 chr3 172177011 172177071 -45860087 + LTR16C LTR ERVL 69 126 -365 1182 213 16 4 chr3 172177149 172177393 -45859765 - L1ME LINE L1 -463 5701 5455 687 257 107 51 chr3 172177407 172177819 -45859339 - Charlie7 DNA MER1_type -1991 621 187 845 279 65 50 chr3 172177882 172178219 -45858939 + L2 LINE L2 2971 3312 -1 439 243 0 59 chr3 172178566 172178718 -45858440 - L1ME4a LINE L1 -40 6081 5939 542 242 66 38 chr3 172178766 172178977 -45858181 - L1ME4a LINE L1 -316 5805 5589 358 159 0 0 chr3 172179594 172179657 -45857501 + Charlie5 DNA MER1_type 1 63 -2549 589 134 63 28 chr3 172179665 172179807 -45857351 + Charlie5 DNA MER1_type 2433 2579 -33 251 213 340 0 chr3 172180222 172180316 -45856842 + MIR SINE MIR 19 144 -118 360 0 0 0 chr3 172180317 172180357 -45856801 + (CA)n Simple_repeat Simple_repeat 2 41 0 4541 218 52 19 chr3 172180541 172180886 -45856272 + L1MD2 LINE L1 4814 5146 -1213 884 209 12 0 chr3 172180886 172181091 -45856067 + FAM SINE Alu 1 71 0 4541 218 52 19 chr3 172181091 172182032 -45855126 + L1MD2 LINE L1 5146 6155 -204 189 0 0 0 chr3 172182032 172182053 -45855105 + (CA)n Simple_repeat Simple_repeat 2 22 0 4541 218 52 19 chr3 172182053 172182253 -45854905 + L1MD2 LINE L1 6155 6347 -12 2148 115 20 0 chr3 172182258 172182563 -45854595 - AluSx SINE Alu -1 311 1 1798 134 71 91 chr3 172182971 172183367 -45853791 + MLT1B LTR MaLR 1 388 -2 250 339 65 83 chr3 172184019 172184344 -45852814 - L2 LINE L2 -1 3271 2953 376 322 85 15 chr3 172187295 172187494 -45849664 - MIR SINE MIR -44 218 6 31 58 0 0 chr3 172187746 172187798 -45849360 + AT_rich Low_complexity Low_complexity 1 52 0 8641 140 11 18 chr3 172188158 172190668 -45846490 - L1MA3 LINE L1 0 6305 3814 2014 168 52 48 chr3 172190670 172191187 -45845971 - L1MA3 LINE L1 -2674 3472 2954 554 136 0 11 chr3 172191310 172191398 -45845760 - Tigger5 DNA MER2_type 0 2323 2237 418 226 12 0 chr3 172191409 172191493 -45845665 + Tigger5 DNA MER2_type 1 85 -2238 314 229 0 0 chr3 172191518 172191579 -45845579 - Tigger5 DNA MER2_type -5 2318 2258 280 140 100 0 chr3 172191555 172191605 -45845553 - Tigger5 DNA MER2_type -2268 55 1 * 544 316 66 66 chr3 172191840 172192312 -45844846 - L1 LINE L1 -1436 4710 4239 3305 132 20 5 chr3 172192450 172193446 -45843712 - L1P4 LINE L1 -394 5767 4762 538 267 25 0 chr3 172193449 172193569 -45843589 + MIR SINE MIR 63 185 -77 740 302 85 16 chr3 172193670 172194117 -45843041 - L1 LINE L1 -2386 3760 3283 * 8500 184 16 4 chr3 172194112 172194488 -45842670 - L1P4 LINE L1 -1375 4771 4401 222 91 0 0 chr3 172194488 172194521 -45842637 + (TG)n Simple_repeat Simple_repeat 2 34 0 8500 184 16 4 chr3 172194521 172195807 -45841351 - L1P4 LINE L1 -1745 4401 3089 1038 283 76 52 chr3 172196388 172196942 -45840216 + L1MC4a LINE L1 5407 5973 -1835 10135 136 18 12 chr3 172197051 172199704 -45837454 - L1PA11 LINE L1 0 6344 3679 234 0 0 0 chr3 172199704 172199730 -45837428 + (TTG)n Simple_repeat Simple_repeat 2 27 0 10135 136 18 12 chr3 172199730 172199767 -45837391 - L1PA11 LINE L1 -2665 3679 3644 385 248 91 8 chr3 172199915 172200036 -45837122 - LTR67 LTR ERVL -17 540 410 238 262 119 36 chr3 172200962 172201214 -45835944 + L1ME LINE L1 5643 5915 -206 23 0 0 0 chr3 172201653 172201676 -45835482 + AT_rich Low_complexity Low_complexity 1 23 0 420 238 48 24 chr3 172201678 172201804 -45835354 - FRAM SINE Alu -4 172 44 193 292 0 0 chr3 172202551 172202599 -45834559 - L2 LINE L2 -1 3312 3265 248 360 45 0 chr3 172203814 172203925 -45833233 + MIR3 SINE MIR 86 201 -7 2320 93 0 0 chr3 172204073 172204364 -45832794 - AluSx SINE Alu -21 291 1 1804 199 17 0 chr3 172205032 172205393 -45831765 - L1MB7 LINE L1 -1 6183 5817 294 242 70 66 chr3 172205442 172205601 -45831557 + MIR SINE MIR 9 166 -63 503 316 13 13 chr3 172207475 172207630 -45829528 - MIR SINE MIR -80 182 28 411 240 89 0 chr3 172208095 172208241 -45828917 - L1MB7 LINE L1 -315 5806 5648 185 235 136 37 chr3 172208919 172209000 -45828158 - MIR SINE MIR -92 170 82 235 162 0 54 chr3 172209842 172209916 -45827242 + (TAAA)n Simple_repeat Simple_repeat 1 70 0 33460 52 3 1 chr3 172209921 172214099 -45823059 + L1PA4 LINE L1 1 4188 -1958 1628 25 0 0 chr3 172214097 172214297 -45822861 - L1P LINE L1 -982 5164 4965 * 10087 35 0 2 chr3 172214297 172216285 -45820873 + L1PA4 LINE L1 4165 6155 0 282 244 8 24 chr3 172216470 172216597 -45820561 + A-rich Low_complexity Low_complexity 3 127 0 275 245 319 0 chr3 172216952 172217046 -45820112 - L2 LINE L2 0 3313 3190 298 269 0 26 chr3 172217058 172217136 -45820022 + MIR SINE MIR 186 261 -1 738 275 206 18 chr3 172217144 172217479 -45819679 - L2 LINE L2 -1078 2236 1839 587 334 44 46 chr3 172217479 172218111 -45819047 + L1ME3A LINE L1 5322 5952 -218 344 251 98 60 chr3 172218172 172218387 -45818771 + L2 LINE L2 1641 1863 -1451 206 241 86 0 chr3 172218702 172218760 -45818398 - L2 LINE L2 -1716 1598 1536 455 248 216 40 chr3 172218776 172218998 -45818160 - MIR SINE MIR -1 261 1 35 24 0 0 chr3 172220265 172220307 -45816851 + AT_rich Low_complexity Low_complexity 1 42 0 250 245 104 57 chr3 172220528 172220634 -45816524 + MIR SINE MIR 20 130 -78 235 341 32 40 chr3 172221748 172221874 -45815284 - L2 LINE L2 -20 3252 3128 455 301 38 0 chr3 172222056 172222189 -45814969 + L2 LINE L2 2209 2346 -968 452 311 107 28 chr3 172222195 172222484 -45814674 - MLT1I LTR MaLR -52 357 46 192 77 0 0 chr3 172222782 172222808 -45814350 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2277 39 11 11 chr3 172222815 172223097 -45814061 - AluY SINE Alu -25 286 5 243 257 0 27 chr3 172223114 172223188 -45813970 - L1MB8 LINE L1 -173 6005 5934 1508 203 12 3 chr3 172223244 172223574 -45813584 - L1ME1 LINE L1 -250 5916 5584 183 42 0 0 chr3 172224777 172224801 -45812357 + (TG)n Simple_repeat Simple_repeat 2 25 0 406 292 37 12 chr3 172226432 172226593 -45810565 - MIR3 SINE MIR -5 203 39 533 266 75 37 chr3 172226726 172226940 -45810218 + MIR SINE MIR 34 255 -7 1377 193 34 76 chr3 172227350 172227786 -45809372 + L1M4 LINE L1 2453 2870 -3276 361 303 36 48 chr3 172227897 172228062 -45809096 + MIR SINE MIR 47 209 -53 360 0 0 0 chr3 172229484 172229524 -45807634 + (TTA)n Simple_repeat Simple_repeat 3 42 0 7492 29 0 0 chr3 172229524 172230716 -45806442 - L1PA3 LINE L1 -18 6137 4946 32 75 0 0 chr3 172231092 172231159 -45805999 + AT_rich Low_complexity Low_complexity 1 67 0 633 322 134 30 chr3 172231223 172231293 -45805865 - L2 LINE L2 -426 2888 2827 468 309 84 6 chr3 172231293 172231471 -45805687 + MER91A DNA MER1_type 5 196 0 633 322 134 30 chr3 172231471 172231968 -45805190 - L2 LINE L2 -487 2827 2262 466 309 18 18 chr3 172232537 172232705 -45804453 + L3 LINE CR1 1288 1455 -122 291 238 196 42 chr3 172232808 172232951 -45804207 - MIR SINE MIR -51 211 47 262 135 122 54 chr3 172232994 172233068 -45804090 + MIR3 SINE MIR 125 203 -5 1681 192 131 16 chr3 172233087 172233462 -45803696 - MER47B DNA MER2_type 0 418 1 25 31 0 0 chr3 172233860 172233892 -45803266 + AT_rich Low_complexity Low_complexity 1 32 0 831 227 81 73 chr3 172234577 172234643 -45802515 + MER45C DNA AcHobo 53 117 -836 1491 184 6 81 chr3 172234643 172234964 -45802194 + AluJo SINE Alu 3 299 -13 831 227 81 73 chr3 172234964 172235170 -45801988 + MER45C DNA AcHobo 117 327 -626 286 170 0 160 chr3 172235227 172235321 -45801837 - Charlie8 DNA MER1_type -2254 163 85 21 0 0 0 chr3 172235470 172235491 -45801667 + AT_rich Low_complexity Low_complexity 1 21 0 576 169 65 40 chr3 172235892 172236016 -45801142 - MER3 DNA MER1_type 0 209 83 446 147 74 21 chr3 172236032 172236127 -45801031 - MER63 DNA MER1_type -103 733 8 494 186 70 0 chr3 172236129 172236215 -45800943 - MER3 DNA MER1_type -117 92 1 1737 152 7 27 chr3 172236431 172236728 -45800430 + AluJo SINE Alu 1 291 -21 386 264 132 0 chr3 172238241 172238362 -45798796 - MIR SINE MIR -76 186 50 2485 135 74 3 chr3 172238856 172239248 -45797910 - MSTB LTR MaLR 0 426 7 281 239 0 98 chr3 172239255 172239347 -45797811 - L2 LINE L2 -27 3245 3163 1394 181 82 44 chr3 172239467 172239782 -45797376 - MLT1F1 LTR MaLR 0 567 241 288 111 0 0 chr3 172240872 172240917 -45796241 + (GA)n Simple_repeat Simple_repeat 1 45 0 518 255 41 107 chr3 172241251 172241569 -45795589 + HAL1 LINE L1 3 299 -2208 14611 115 24 61 chr3 172241570 172243617 -45793541 + Tigger1 DNA MER2_type 1 2060 -358 814 103 0 17 chr3 172243617 172243733 -45793425 - AluSg/x SINE Alu -5 305 192 14611 115 24 61 chr3 172243733 172244079 -45793079 + Tigger1 DNA MER2_type 2060 2417 -1 1272 268 114 53 chr3 172244082 172244430 -45792728 + HAL1 LINE L1 301 626 -1881 1999 138 10 0 chr3 172244430 172244726 -45792432 + AluSx SINE Alu 1 299 -13 1272 268 114 53 chr3 172244726 172245225 -45791933 + HAL1 LINE L1 626 1200 -1307 * 2460 247 70 39 chr3 172245221 172246169 -45790989 + HAL1 LINE L1 1531 2507 0 1535 279 100 8 chr3 172246678 172247281 -45789877 - L2 LINE L2 -598 2716 1991 833 208 174 20 chr3 172247297 172247590 -45789568 - MER46C DNA MER2_type 0 338 1 1401 160 9 0 chr3 172247928 172248147 -45789011 + AluJo SINE Alu 1 221 -91 2228 71 0 37 chr3 172248251 172248546 -45788612 - AluY SINE Alu -27 284 1 414 94 0 47 chr3 172248616 172248680 -45788478 - 7SK RNA RNA 0 193 133 692 202 65 24 chr3 172248692 172248860 -45788298 - 7SK RNA RNA -18 175 1 359 261 0 0 chr3 172248861 172248953 -45788205 - L1MEc LINE L1 -4039 2357 2266 853 201 0 13 chr3 172248986 172249135 -45788023 + MER58B DNA MER1_type 195 341 0 5988 256 72 24 chr3 172249135 172251272 -45785886 - L1MEc LINE L1 -4121 2275 37 243 299 35 11 chr3 172251307 172251394 -45785764 + MIR SINE MIR 65 153 -109 24 0 0 0 chr3 172251527 172251551 -45785607 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr3 172251590 172251619 -45785539 + AT_rich Low_complexity Low_complexity 1 29 0 366 286 21 21 chr3 172253047 172253187 -45783971 - L1ME LINE L1 -485 5636 5497 24 32 0 0 chr3 172254085 172254116 -45783042 + AT_rich Low_complexity Low_complexity 1 31 0 253 167 0 17 chr3 172254116 172254176 -45782982 - L1ME4a LINE L1 -11 6110 6052 191 372 112 23 chr3 172255649 172255907 -45781251 + L2 LINE L2 2247 2527 -787 831 227 49 66 chr3 172255950 172256316 -45780842 + L1M4 LINE L1 3102 3461 -2685 255 331 7 0 chr3 172256350 172256489 -45780669 + L1M4 LINE L1 2440 2579 -3567 360 177 0 16 chr3 172256771 172256833 -45780325 + MER3 DNA MER1_type 42 102 -107 208 147 0 0 chr3 172258149 172258183 -45778975 + (TAAAAA)n Simple_repeat Simple_repeat 1 34 0 304 326 37 56 chr3 172258487 172258757 -45778401 + L2 LINE L2 2625 2889 -425 2698 120 31 2 chr3 172260075 172260491 -45776667 + MSTA LTR MaLR 1 428 0 319 264 64 24 chr3 172261591 172261716 -45775442 - L3 LINE CR1 -2 1575 1446 462 328 40 17 chr3 172262175 172262349 -45774809 + MIR3 SINE MIR 3 180 -28 516 220 101 19 chr3 172264406 172264565 -45772593 - MIR3 SINE MIR -4 204 33 1542 165 66 18 chr3 172264782 172265055 -45772103 + AluJo SINE Alu 1 286 -26 22 35 0 0 chr3 172266649 172266678 -45770480 + AT_rich Low_complexity Low_complexity 1 29 0 196 175 150 0 chr3 172266884 172266924 -45770234 - MIR SINE MIR -131 131 86 25 31 0 0 chr3 172266982 172267014 -45770144 + AT_rich Low_complexity Low_complexity 1 32 0 182 407 25 0 chr3 172267261 172267342 -45769816 - L2 LINE L2 -198 3074 2992 360 365 44 24 chr3 172267482 172267731 -45769427 - L2 LINE L2 -556 2758 2505 183 293 61 12 chr3 172268163 172268245 -45768913 - MIR3 SINE MIR -7 201 116 * 287 303 84 35 chr3 172268198 172268340 -45768818 + MER5A DNA MER1_type 41 189 0 467 209 20 47 chr3 172269884 172270032 -45767126 - Charlie2 DNA MER1_type -32 2830 2687 300 188 62 0 chr3 172270106 172270186 -45766972 - Charlie2 DNA MER1_type -545 2317 2233 1362 255 72 73 chr3 172270193 172270914 -45766244 - Charlie2a DNA MER1_type -1773 1089 370 654 110 153 25 chr3 172272607 172272725 -45764433 + FLAM_C SINE Alu 1 133 0 2105 112 24 0 chr3 172272791 172273086 -45764072 + AluSx SINE Alu 1 302 -10 486 306 59 0 chr3 172273419 172273589 -45763569 - MIR SINE MIR -26 236 57 210 319 8 17 chr3 172274381 172274500 -45762658 + CT-rich Low_complexity Low_complexity 1 118 0 419 318 82 39 chr3 172274831 172275064 -45762094 - L1MEd LINE L1 -5163 956 714 475 313 83 26 chr3 172275127 172275357 -45761801 - L1MEd LINE L1 -5424 695 453 1221 184 126 13 chr3 172275363 172275672 -45761486 - MER2 DNA MER2_type 0 344 1 2063 148 48 16 chr3 172277948 172278325 -45758833 + MLT1B LTR MaLR 1 389 -1 2112 133 41 0 chr3 172278522 172278890 -45758268 + L1P5 LINE L1 5308 5690 -466 405 0 0 0 chr3 172278895 172278940 -45758218 + (TA)n Simple_repeat Simple_repeat 1 45 0 1290 168 0 5 chr3 172281440 172281642 -45755516 + AluJb SINE Alu 86 286 -26 2090 161 12 0 chr3 172282540 172282881 -45754277 + MER7A DNA MER2_type 4 346 0 679 301 69 40 chr3 172283803 172284178 -45752980 - MLT1L LTR MaLR -99 516 131 483 18 0 0 chr3 172284480 172284536 -45752622 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 240 256 24 49 chr3 172284976 172285058 -45752100 - MER5A DNA MER1_type -1 188 109 358 245 14 72 chr3 172285072 172285211 -45751947 - MER5A DNA MER1_type -56 133 3 2297 93 0 13 chr3 172286019 172286320 -45750838 + AluSx SINE Alu 1 297 -15 314 286 59 17 chr3 172286496 172286615 -45750543 + L2 LINE L2 1945 2068 -1246 439 296 48 21 chr3 172286825 172287011 -45750147 - L2 LINE L2 -167 3146 2956 2557 164 72 4 chr3 172287067 172287177 -45749981 + MLT1D LTR MaLR 1 102 -403 1788 144 19 45 chr3 172287177 172287489 -45749669 + AluSx SINE Alu 1 304 -8 2557 164 72 4 chr3 172287489 172287847 -45749311 + MLT1D LTR MaLR 102 501 -4 543 314 125 4 chr3 172287874 172288154 -45749004 - L2 LINE L2 -527 2787 2474 620 243 7 33 chr3 172288224 172288376 -45748782 + MIR SINE MIR 2 149 -113 335 240 39 54 chr3 172288443 172288572 -45748586 - L2 LINE L2 -899 2415 2289 585 0 0 0 chr3 172288647 172288712 -45748446 + (TATTG)n Simple_repeat Simple_repeat 1 65 0 2170 96 7 3 chr3 172290456 172290748 -45746410 - AluSg SINE Alu -17 293 1 397 219 66 36 chr3 172290748 172290885 -45746273 - L1ME4a LINE L1 -211 5910 5770 358 301 23 15 chr3 172291008 172291141 -45746017 - L1ME4a LINE L1 -510 5611 5478 2790 247 65 57 chr3 172291266 172292547 -45744611 - L1MC4 LINE L1 -1 8041 6751 480 185 9 19 chr3 172292547 172292655 -45744503 + L1MA10 LINE L1 6215 6321 -13 348 247 27 101 chr3 172292790 172293009 -45744149 + L1ME3A LINE L1 5968 6170 0 23 0 0 0 chr3 172293188 172293211 -45743947 + AT_rich Low_complexity Low_complexity 1 23 0 2184 257 63 27 chr3 172293264 172294030 -45743128 - L1ME LINE L1 -5198 872 80 28 0 0 0 chr3 172294362 172294390 -45742768 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr3 172294558 172294585 -45742573 + AT_rich Low_complexity Low_complexity 1 27 0 273 330 92 0 chr3 172295139 172295248 -45741910 - MIR3 SINE MIR -43 165 47 30 45 0 0 chr3 172295866 172295910 -45741248 + AT_rich Low_complexity Low_complexity 1 44 0 762 301 88 22 chr3 172296664 172297029 -45740129 - MARNA DNA Mariner -155 431 43 1833 155 11 0 chr3 172297282 172297579 -45739579 + AluSx SINE Alu 4 303 0 277 163 213 12 chr3 172297678 172297758 -45739400 + L2 LINE L2 3218 3313 0 377 283 198 50 chr3 172297796 172298324 -45738834 - L2 LINE L2 -14 3299 2652 2235 122 0 0 chr3 172298515 172298810 -45738348 + AluSq SINE Alu 4 298 -15 299 247 27 0 chr3 172299174 172299247 -45737911 - MER5A DNA MER1_type -48 141 67 2717 71 13 26 chr3 172300603 172300983 -45736175 + THE1C LTR MaLR 1 375 0 189 171 0 0 chr3 172301118 172301153 -45736005 + C-rich Low_complexity Low_complexity 2 36 0 221 331 70 42 chr3 172301541 172301683 -45735475 - MIR SINE MIR -96 166 21 187 311 197 8 chr3 172302151 172302273 -45734885 + MIR SINE MIR 20 164 -98 2222 122 13 39 chr3 172302507 172302892 -45734266 + THE1C LTR MaLR 1 375 0 23 33 0 0 chr3 172303281 172303311 -45733847 + AT_rich Low_complexity Low_complexity 1 30 0 220 287 120 53 chr3 172303423 172303573 -45733585 + MIR3 SINE MIR 12 171 -37 273 247 55 0 chr3 172303587 172303660 -45733498 + L2 LINE L2 3237 3313 0 2052 170 189 0 chr3 172305078 172305501 -45731657 - MLT1D LTR MaLR 0 505 3 5280 225 54 24 chr3 172305502 172307423 -45729735 + L1ME LINE L1 2026 3957 -2258 831 199 41 26 chr3 172307402 172307729 -45729429 + L1ME LINE L1 5189 5523 -716 * 2818 7 0 0 chr3 172307729 172308025 -45729133 - AluYb8 SINE Alu -13 305 10 536 360 84 18 chr3 172308221 172308937 -45728221 - L2 LINE L2 -831 2483 1721 314 240 194 16 chr3 172309363 172309492 -45727666 - MLT1K LTR MaLR -2 586 435 477 221 221 0 chr3 172310956 172311083 -45726075 - MLT1K LTR MaLR -294 294 140 22 0 0 0 chr3 172311366 172311388 -45725770 + AT_rich Low_complexity Low_complexity 1 22 0 1054 138 38 0 chr3 172311561 172311721 -45725437 + FRAM SINE Alu 4 169 -7 273 344 0 0 chr3 172312204 172312297 -45724861 - L2 LINE L2 0 3272 3180 2058 128 0 3 chr3 172313579 172313861 -45723297 - AluSg SINE Alu -29 281 1 355 259 46 0 chr3 172314159 172314267 -45722891 + MIR SINE MIR 35 147 -115 2395 193 37 57 chr3 172314857 172315422 -45721736 - MLT2B3 LTR ERVL 0 554 1 307 314 58 0 chr3 172315766 172315900 -45721258 - MIR SINE MIR -58 150 42 231 227 0 15 chr3 172315918 172315984 -45721174 + A-rich Low_complexity Low_complexity 3 67 0 506 283 58 15 chr3 172316489 172316694 -45720464 - MIR SINE MIR -19 243 30 238 230 133 18 chr3 172318287 172318400 -45718758 - MER5A DNA MER1_type -63 126 1 2337 133 31 33 chr3 172318473 172318864 -45718294 + MLT1B LTR MaLR 1 390 0 351 253 21 0 chr3 172319116 172319211 -45717947 - MIR SINE MIR -11 251 155 585 211 80 146 chr3 172319220 172319556 -45717602 - MER46C DNA MER2_type -5 333 20 418 267 10 0 chr3 172319561 172319662 -45717496 - MIR SINE MIR -111 151 50 2542 149 56 20 chr3 172319707 172320156 -45717002 + MLT1C LTR MaLR 3 467 0 3443 73 0 5 chr3 172320397 172320838 -45716320 + L1PA8 LINE L1 5732 6170 -2 1316 196 9 92 chr3 172320859 172321195 -45715963 + AluJo SINE Alu 1 308 -4 241 149 0 21 chr3 172322225 172322272 -45714886 + L2 LINE L2 3264 3309 -4 193 330 39 0 chr3 172322991 172323094 -45714064 - MIR3 SINE MIR -87 121 15 288 197 82 49 chr3 172325122 172325244 -45711914 - L1ME4a LINE L1 -13 6108 5983 207 0 0 0 chr3 172326066 172326089 -45711069 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 305 118 15 73 chr3 172326215 172326283 -45710875 - L2 LINE L2 -1 3271 3208 255 223 68 87 chr3 172326291 172326394 -45710764 - MIR SINE MIR -104 158 58 326 282 14 63 chr3 172326814 172326956 -45710202 + MIR SINE MIR 17 151 -111 209 81 0 27 chr3 172328133 172328170 -45708988 + (TTTTC)n Simple_repeat Simple_repeat 3 38 0 2365 95 0 9 chr3 172328173 172328489 -45708669 - AluSq SINE Alu 0 313 1 280 335 29 18 chr3 172329093 172329263 -45707895 + L1ME LINE L1 5632 5803 -318 254 220 120 40 chr3 172329549 172329649 -45707509 - MLT1E3 LTR MaLR -36 588 481 * 524 218 72 81 chr3 172329638 172329878 -45707280 - MLT1H LTR MaLR -270 279 1 260 188 69 69 chr3 172329883 172329984 -45707174 + L1MC4a LINE L1 6074 6174 -1634 252 202 0 160 chr3 172330007 172330126 -45707032 + L1MC5 LINE L1 7758 7857 -104 22 0 0 0 chr3 172330183 172330205 -45706953 + AT_rich Low_complexity Low_complexity 1 22 0 243 87 0 43 chr3 172331132 172331178 -45705980 + L1MC5 LINE L1 7641 7684 -277 481 261 8 8 chr3 172331188 172331322 -45705836 - L1ME3A LINE L1 -2 6168 6035 397 215 89 22 chr3 172331347 172331482 -45705676 + L1MC5 LINE L1 7708 7851 -110 275 296 76 38 chr3 172331739 172331871 -45705287 + L2 LINE L2 3136 3272 0 621 282 18 0 chr3 172332019 172332182 -45704976 - MIR3 SINE MIR -9 199 34 507 275 57 5 chr3 172333467 172333660 -45703498 - MIR3 SINE MIR -4 204 2 238 347 50 0 chr3 172334715 172334836 -45702322 - MIR SINE MIR -63 145 19 423 306 148 9 chr3 172335365 172335581 -45701577 - MIR SINE MIR -8 254 9 469 270 22 60 chr3 172335581 172335766 -45701392 + MER5B DNA MER1_type 1 178 0 1996 117 6 22 chr3 172336031 172336382 -45700776 - MER4A LTR ERV1 0 664 261 573 122 56 0 chr3 172336382 172336472 -45700686 - MER4A LTR ERV1 -566 98 4 270 0 0 0 chr3 172336472 172336502 -45700656 + (TA)n Simple_repeat Simple_repeat 2 31 0 507 269 63 55 chr3 172336660 172337058 -45700100 + L1ME4a LINE L1 5591 5991 -130 2238 169 78 18 chr3 172337275 172337712 -45699446 + MER101 LTR ERV1 12 474 0 22 0 0 0 chr3 172338444 172338466 -45698692 + GC_rich Low_complexity Low_complexity 1 22 0 213 287 78 23 chr3 172340496 172340625 -45696533 - MIR SINE MIR -36 226 91 238 88 0 0 chr3 172340638 172340672 -45696486 - MSTD LTR MaLR 0 396 363 396 0 0 0 chr3 172340778 172340822 -45696336 + (CA)n Simple_repeat Simple_repeat 2 45 0 1833 161 49 11 chr3 172340822 172341170 -45695988 + L1PB4 LINE L1 5793 6153 -3 213 354 49 0 chr3 172341495 172341577 -45695581 - L2 LINE L2 -34 3238 3153 842 271 121 42 chr3 172341585 172342064 -45695094 - L1ME4a LINE L1 -87 6034 5518 301 243 0 29 chr3 172342377 172342447 -45694711 - LTR67 LTR ERVL -6 551 484 23 0 0 0 chr3 172343048 172343071 -45694087 + AT_rich Low_complexity Low_complexity 1 23 0 228 266 127 0 chr3 172344913 172344992 -45692166 + L2 LINE L2 3199 3287 -26 2182 134 3 0 chr3 172346633 172346938 -45690220 + AluSx SINE Alu 1 306 -6 981 140 48 92 chr3 172347126 172347355 -45689803 + MER20 DNA MER1_type 1 219 0 184 286 14 29 chr3 172347518 172347588 -45689570 - L2 LINE L2 -83 3189 3121 1747 144 10 59 chr3 172348097 172348402 -45688756 + AluJo SINE Alu 2 291 -21 197 282 179 0 chr3 172350324 172350402 -45686756 - MIR SINE MIR -6 256 165 1744 158 0 0 chr3 172350581 172350854 -45686304 + AluSx SINE Alu 1 273 -39 692 66 69 7 chr3 172350854 172351136 -45686022 + GA-rich Low_complexity Low_complexity 1 299 0 754 187 6 6 chr3 172351168 172351334 -45685824 + GA-rich Low_complexity Low_complexity 1 166 0 1113 117 19 0 chr3 172351527 172351689 -45685469 - FRAM SINE Alu -12 164 1 262 250 162 47 chr3 172352060 172352208 -45684950 - MIR SINE MIR -71 191 27 2323 73 0 25 chr3 172352345 172352661 -45684497 + AluY SINE Alu 1 308 -3 224 75 0 25 chr3 172352697 172352737 -45684421 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 293 247 26 13 chr3 172353804 172353881 -45683277 - MIR SINE MIR -165 97 20 2336 149 79 29 chr3 172353953 172354396 -45682762 - MLT1C LTR MaLR 0 467 3 1960 105 3 77 chr3 172355796 172356121 -45681037 + AluSx SINE Alu 1 301 -11 759 148 153 51 chr3 172357295 172357491 -45679667 + MER20 DNA MER1_type 1 216 -3 1480 168 84 35 chr3 172358454 172358740 -45678418 + AluJo SINE Alu 3 302 0 245 314 144 0 chr3 172361348 172361466 -45675692 - L2 LINE L2 0 3272 3138 182 107 0 0 chr3 172362259 172362287 -45674871 + L2 LINE L2 3242 3269 -3 255 61 0 0 chr3 172363076 172363109 -45674049 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 304 356 69 57 chr3 172363109 172363694 -45673464 - L2 LINE L2 -13 3259 2565 214 0 120 80 chr3 172364087 172364137 -45673021 + (TATAA)n Simple_repeat Simple_repeat 3 54 0 282 116 0 0 chr3 172364137 172364180 -45672978 + (TG)n Simple_repeat Simple_repeat 2 44 0 300 282 77 106 chr3 172364341 172364720 -45672438 - L2 LINE L2 -40 3232 2865 1278 242 174 32 chr3 172364770 172365241 -45671917 - MLT1F LTR MaLR 0 542 5 762 200 62 29 chr3 172415555 172415765 -45621393 - L1ME1 LINE L1 -137 6029 5813 503 248 7 0 chr3 172415782 172415923 -45621235 - L1MA10 LINE L1 -11 6323 6182 2352 120 25 3 chr3 172415939 172416307 -45620851 - L1PA16 LINE L1 -18 6148 5773 195 100 0 0 chr3 172416309 172416339 -45620819 + (TTTTTA)n Simple_repeat Simple_repeat 2 31 0 2154 163 0 10 chr3 172416363 172416749 -45620409 - L1PA16 LINE L1 -391 5775 5394 2104 82 8 0 chr3 172417057 172417324 -45619834 - AluSg SINE Alu -41 269 1 778 192 89 0 chr3 172418194 172418340 -45618818 + FRAM SINE Alu 1 159 -7 313 211 0 14 chr3 172418350 172418421 -45618737 - L1MCa LINE L1 -4362 2064 1995 313 326 0 0 chr3 172418363 172418452 -45618706 + L1MC4 LINE L1 6614 6702 -1340 * 333 273 23 0 chr3 172418405 172418493 -45618665 - L1MC4 LINE L1 -1339 6703 6614 258 274 124 73 chr3 172418779 172419053 -45618105 + L3b LINE CR1 1134 1421 -162 246 299 11 0 chr3 172419316 172419403 -45617755 + CT-rich Low_complexity Low_complexity 4 91 0 1948 66 12 0 chr3 172419600 172419856 -45617302 + L1PA5 LINE L1 5896 6154 0 1942 130 12 35 chr3 172419860 172420430 -45616728 - MER4A LTR ERV1 -39 625 1 3706 214 56 9 chr3 172420430 172421420 -45615738 - L1P LINE L1 -2280 3866 2831 408 90 0 39 chr3 172421422 172421500 -45615658 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 264 241 0 0 chr3 172421505 172421563 -45615595 - FLAM_A SINE Alu -2 131 74 426 238 215 33 chr3 172422452 172422666 -45614492 + MIR SINE MIR 3 255 -7 746 217 140 37 chr3 172422718 172422990 -45614168 + MER5C DNA MER1_type 21 320 -4 644 189 163 20 chr3 172424044 172424197 -45612961 - MER5A DNA MER1_type -6 183 9 21 0 0 0 chr3 172425919 172425940 -45611218 + AT_rich Low_complexity Low_complexity 1 21 0 228 127 25 25 chr3 172426471 172426550 -45610608 + T-rich Low_complexity Low_complexity 6 84 0 226 206 63 32 chr3 172426611 172426674 -45610484 - L2 LINE L2 -1 3271 3207 491 121 31 197 chr3 172426724 172426884 -45610274 + MER53 DNA DNA 4 120 -69 2248 78 0 0 chr3 172426884 172427195 -45609963 + AluY SINE Alu 1 311 0 491 121 31 197 chr3 172427195 172427256 -45609902 + MER53 DNA DNA 120 189 0 451 269 62 14 chr3 172427481 172427626 -45609532 - MIR SINE MIR 0 262 111 647 221 0 8 chr3 172427865 172427987 -45609171 + FLAM_A SINE Alu 1 121 -12 2175 106 7 0 chr3 172428889 172429221 -45607937 - AluSq SINE Alu 0 313 2 2554 209 77 54 chr3 172429488 172430263 -45606895 + MER21B LTR ERV1 13 805 -58 365 280 0 21 chr3 172432725 172432818 -45604340 - L2 LINE L2 -32 3281 3191 1874 145 80 9 chr3 172432820 172433158 -45604000 - MER47A DNA MER2_type -2 364 3 22 0 0 0 chr3 172433253 172433275 -45603883 + AT_rich Low_complexity Low_complexity 1 22 0 2114 114 0 29 chr3 172433343 172433658 -45603500 + AluSx SINE Alu 1 306 -6 888 167 67 29 chr3 172433664 172433874 -45603284 - MER96B DNA MER1_type? -157 260 43 189 329 13 13 chr3 172434571 172434650 -45602508 - MIR SINE MIR -119 143 65 1633 136 145 15 chr3 172434829 172435153 -45602005 + MER47A DNA MER2_type 1 366 0 322 203 13 0 chr3 172435846 172435925 -45601233 + MER116 DNA Mariner 1 80 0 2047 113 0 0 chr3 172436650 172436925 -45600233 - AluSc SINE Alu 0 309 35 2306 96 0 17 chr3 172437877 172438179 -45598979 + AluSx SINE Alu 1 297 -15 24 53 0 0 chr3 172438608 172438646 -45598512 + AT_rich Low_complexity Low_complexity 1 38 0 1727 173 17 7 chr3 172439478 172439773 -45597385 + AluJb SINE Alu 1 298 -14 419 360 90 32 chr3 172440334 172440612 -45596546 - L2 LINE L2 0 3272 2979 684 285 155 16 chr3 172440859 172441402 -45595756 - L2 LINE L2 0 3313 2322 1731 174 15 15 chr3 172441412 172441745 -45595413 - L1MC1 LINE L1 0 6333 6001 683 203 31 88 chr3 172441758 172441985 -45595173 - L2 LINE L2 0 3313 3100 1620 184 27 3 chr3 172442109 172442403 -45594755 + AluSx SINE Alu 1 301 -11 235 329 12 0 chr3 172442584 172442666 -45594492 + MIR SINE MIR 50 132 -76 2364 90 3 0 chr3 172443746 172444046 -45593112 + AluSc SINE Alu 1 301 -8 332 102 0 17 chr3 172444420 172444479 -45592679 + (TC)n Simple_repeat Simple_repeat 2 59 0 231 114 0 0 chr3 172444479 172444514 -45592644 + (CA)n Simple_repeat Simple_repeat 1 35 0 363 338 99 25 chr3 172444526 172444727 -45592431 + L2 LINE L2 3057 3272 0 2366 84 3 0 chr3 172445548 172445845 -45591313 - AluSc SINE Alu -11 298 1 480 294 155 28 chr3 172445902 172446374 -45590784 + L2 LINE L2 1553 2084 -1230 239 281 10 52 chr3 172446419 172446515 -45590643 + L2 LINE L2 2212 2303 -1011 766 167 8 0 chr3 172446543 172446669 -45590489 - FLAM_A SINE Alu -5 137 11 813 363 86 32 chr3 172446716 172447578 -45589580 + L2 LINE L2 2366 3272 0 194 239 14 0 chr3 172447820 172447891 -45589267 + (TA)n Simple_repeat Simple_repeat 2 73 0 1801 186 10 0 chr3 172448390 172448686 -45588472 + AluJb SINE Alu 1 299 -13 504 251 60 36 chr3 172449098 172449265 -45587893 - MER5A DNA MER1_type -15 174 4 233 220 0 0 chr3 172449928 172449987 -45587171 + (TA)n Simple_repeat Simple_repeat 2 60 0 1972 140 7 3 chr3 172449987 172450287 -45586871 - AluSx SINE Alu -11 301 1 1789 184 3 7 chr3 172450781 172451069 -45586089 + AluJo SINE Alu 1 287 -25 408 259 36 0 chr3 172451506 172451618 -45585540 - MIR SINE MIR -133 129 14 327 327 76 82 chr3 172451898 172452360 -45584798 + L2 LINE L2 2814 3272 0 3369 114 19 48 chr3 172452648 172452818 -45584340 + HSMAR2 DNA Mariner 734 907 -395 1574 160 18 35 chr3 172452818 172453100 -45584058 + AluJo SINE Alu 1 277 -35 978 125 17 6 chr3 172453100 172453276 -45583882 + GA-rich Low_complexity Low_complexity 1 178 0 518 0 0 16 chr3 172453277 172453340 -45583818 + (GGAA)n Simple_repeat Simple_repeat 4 65 0 3369 114 19 48 chr3 172453340 172453752 -45583406 + HSMAR2 DNA Mariner 905 1302 0 873 289 97 18 chr3 172453800 172454253 -45582905 + LTR33 LTR ERVL 33 521 0 1635 135 0 101 chr3 172455275 172455622 -45581536 - AluJo SINE Alu 0 312 1 237 135 0 0 chr3 172455920 172455972 -45581186 + (A)n Simple_repeat Simple_repeat 1 52 0 24 67 0 0 chr3 172455991 172456036 -45581122 + AT_rich Low_complexity Low_complexity 1 45 0 1370 162 0 14 chr3 172456613 172456835 -45580323 + AluJb SINE Alu 84 302 -10 24 0 0 0 chr3 172457107 172457131 -45580027 + AT_rich Low_complexity Low_complexity 1 24 0 206 222 389 11 chr3 172457265 172457355 -45579803 - L2 LINE L2 -10 3262 3139 274 282 83 39 chr3 172457625 172457781 -45579377 + L2 LINE L2 3005 3167 -146 1928 122 59 0 chr3 172457791 172458078 -45579080 - AluSx SINE Alu -8 304 1 8920 160 13 18 chr3 172458211 172460476 -45576682 - L1M2 LINE L1 -510 6429 4176 1158 178 0 0 chr3 172460559 172460761 -45576397 + L1M2c LINE L1 70 271 -6518 2380 115 13 5 chr3 172460771 172461161 -45575997 + L1M2 LINE L1 5305 5697 -600 * 3714 172 58 5 chr3 172461160 172461897 -45575261 - L1M2 LINE L1 -6000 789 14 1688 177 3 30 chr3 172462457 172462762 -45574396 + AluJo SINE Alu 1 297 -15 40254 55 3 3 chr3 172463203 172469327 -45567831 - L1PA5 LINE L1 -21 6133 11 23 0 0 0 chr3 172469418 172469441 -45567717 + AT_rich Low_complexity Low_complexity 1 23 0 210 273 0 0 chr3 172470417 172470461 -45566697 + L2 LINE L2 3204 3247 -25 273 220 156 14 chr3 172471709 172471850 -45565308 - L1ME4a LINE L1 -1 6120 5960 204 143 0 0 chr3 172472226 172472268 -45564890 + (TA)n Simple_repeat Simple_repeat 1 42 0 932 282 18 0 chr3 172472415 172472635 -45564523 - MER58A DNA MER1_type 0 224 1 257 289 80 32 chr3 172472712 172472899 -45564259 + HAL1 LINE L1 1 196 -2311 1091 188 33 0 chr3 172473960 172474173 -45562985 - AluJb SINE Alu -11 301 82 424 302 116 0 chr3 172474329 172474506 -45562652 - MIR SINE MIR -62 146 3 21 0 0 0 chr3 172476536 172476557 -45560601 + AT_rich Low_complexity Low_complexity 1 21 0 3139 180 3 17 chr3 172476557 172477151 -45560007 + L1MB5 LINE L1 5581 6166 -8 401 348 43 24 chr3 172477334 172477498 -45559660 - MIR SINE MIR -90 172 6 24 53 0 0 chr3 172480239 172480277 -45556881 + AT_rich Low_complexity Low_complexity 1 38 0 673 286 101 9 chr3 172480367 172480584 -45556574 + MIR SINE MIR 26 262 0 324 172 35 46 chr3 172481077 172481164 -45555994 - MIR SINE MIR -1 261 176 358 349 0 0 chr3 172481164 172481273 -45555885 - MER81 DNA DNA -5 109 1 458 176 282 23 chr3 172481273 172481404 -45555754 - MIR SINE MIR -86 176 12 27 0 0 0 chr3 172481881 172481908 -45555250 + AT_rich Low_complexity Low_complexity 1 27 0 6198 115 18 6 chr3 172483177 172485017 -45552141 + L1PA11 LINE L1 4289 6153 -21 2165 91 3 14 chr3 172485021 172485308 -45551850 + AluSx SINE Alu 5 288 -24 3186 151 2 5 chr3 172486844 172487407 -45549751 + L1MB3 LINE L1 5587 6147 -36 232 258 0 15 chr3 172487484 172487550 -45549608 - L2 LINE L2 -90 3223 3159 210 37 0 0 chr3 172487570 172487597 -45549561 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 286 256 325 0 chr3 172487789 172487906 -45549252 + MIR SINE MIR 20 174 -88 310 341 28 115 chr3 172488947 172489199 -45547959 + L2 LINE L2 2947 3176 -96 181 290 75 37 chr3 172489252 172489359 -45547799 - L2 LINE L2 0 3313 3203 677 203 8 8 chr3 172490477 172490610 -45546548 - FLAM_A SINE Alu 0 133 1 1820 177 3 0 chr3 172490689 172491049 -45546109 - AluJb SINE Alu 0 361 1 202 293 89 24 chr3 172491151 172491274 -45545884 + MIR SINE MIR 2 132 -130 205 264 195 11 chr3 172491376 172491463 -45545695 + MIR SINE MIR 114 216 -46 182 200 0 0 chr3 172491488 172491518 -45545640 + L2 LINE L2 3208 3237 -35 31 44 0 0 chr3 172491957 172492002 -45545156 + AT_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr3 172493008 172493036 -45544122 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 172493984 172494005 -45543153 + AT_rich Low_complexity Low_complexity 1 21 0 258 163 23 0 chr3 172495030 172495073 -45542085 + AluSp SINE Alu 132 175 -128 * 489 123 75 19 chr3 172495070 172495176 -45541982 + MSTC LTR MaLR 315 426 -2 805 160 0 8 chr3 172495666 172495791 -45541367 - FLAM_C SINE Alu -9 124 1 357 309 32 41 chr3 172495897 172496040 -45541118 - MIR SINE MIR -64 144 4 414 251 33 85 chr3 172496624 172496796 -45540362 - L1ME3A LINE L1 -223 5947 5785 1994 141 0 0 chr3 172496796 172497104 -45540054 - AluSx SINE Alu 0 308 1 414 251 33 85 chr3 172497104 172497141 -45540017 - L1ME3A LINE L1 -385 5785 5748 889 137 0 14 chr3 172497321 172497460 -45539698 - FRAM SINE Alu -8 168 32 266 219 76 38 chr3 172497552 172497657 -45539501 + LTR68 LTR ERV1 71 179 -561 261 294 11 11 chr3 172498072 172498164 -45538994 + L1ME LINE L1 5611 5702 -468 2035 106 39 35 chr3 172499763 172500075 -45537083 - AluSq SINE Alu 0 313 1 1915 155 17 0 chr3 172500077 172500367 -45536791 - AluSx SINE Alu -17 295 1 580 208 0 9 chr3 172500551 172500657 -45536501 + FLAM_C SINE Alu 7 111 -32 230 146 42 0 chr3 172500800 172500848 -45536310 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 188 326 0 0 chr3 172500982 172501028 -45536130 - MIR SINE MIR -13 249 204 2093 247 66 14 chr3 172502292 172502696 -45534462 - MLT1E LTR MaLR -1 592 149 426 20 0 0 chr3 172502696 172502747 -45534411 + (TG)n Simple_repeat Simple_repeat 2 52 0 2093 247 66 14 chr3 172502747 172502905 -45534253 - MLT1E LTR MaLR -444 149 1 489 261 25 0 chr3 172504006 172504125 -45533033 - L2 LINE L2 -6 3307 3186 1916 166 0 6 chr3 172504912 172505226 -45531932 + AluSx SINE Alu 1 312 0 28 0 0 26 chr3 172505371 172505396 -45531762 + AT_rich Low_complexity Low_complexity 1 26 -12 1904 155 0 7 chr3 172505396 172505686 -45531472 - AluSx SINE Alu -24 288 1 28 0 0 26 chr3 172505686 172505699 -45531459 + AT_rich Low_complexity Low_complexity 26 38 0 863 260 31 18 chr3 172506781 172507004 -45530154 - MIR SINE MIR -35 227 2 182 390 49 8 chr3 172508354 172508477 -45528681 - L2 LINE L2 -1 3271 3144 219 69 0 0 chr3 172508540 172508569 -45528589 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 623 279 7 0 chr3 172509414 172509554 -45527604 - MIR SINE MIR -106 156 16 943 189 0 6 chr3 172510407 172510566 -45526592 + FAM SINE Alu 1 158 -17 2344 90 3 0 chr3 172510941 172511241 -45525917 + AluSc SINE Alu 1 301 -8 332 102 0 17 chr3 172511615 172511674 -45525484 + (TC)n Simple_repeat Simple_repeat 2 59 0 231 114 0 0 chr3 172511674 172511709 -45525449 + (CA)n Simple_repeat Simple_repeat 1 35 0 357 338 99 25 chr3 172511721 172511922 -45525236 + L2 LINE L2 3057 3272 0 2329 87 0 7 chr3 172512743 172513043 -45524115 - AluSc SINE Alu -11 298 1 689 165 8 24 chr3 172513051 172513178 -45523980 - FLAM_C SINE Alu -8 125 1 643 211 38 92 chr3 172513760 172513890 -45523268 + AluJo SINE Alu 1 120 -192 2703 26 0 0 chr3 172513890 172514193 -45522965 + AluY SINE Alu 1 303 -8 643 211 38 92 chr3 172514193 172514247 -45522911 + AluJo SINE Alu 120 175 -137 534 107 78 19 chr3 172514247 172514350 -45522808 + MSTC LTR MaLR 318 426 -2 529 328 145 25 chr3 172514355 172514748 -45522410 - L2 LINE L2 -723 2591 2152 25 31 0 0 chr3 172515491 172515523 -45521635 + AT_rich Low_complexity Low_complexity 1 32 0 371 248 51 43 chr3 172515925 172516042 -45521116 + L2 LINE L2 3187 3304 -9 730 247 55 96 chr3 172516175 172516559 -45520599 + MLT1I LTR MaLR 42 409 0 849 231 122 4 chr3 172516561 172516790 -45520368 + MIR SINE MIR 7 262 0 2064 118 14 0 chr3 172517018 172517335 -45519823 + AluSx SINE Alu 1 321 0 33 25 0 0 chr3 172517414 172517454 -45519704 + AT_rich Low_complexity Low_complexity 1 40 0 312 311 131 0 chr3 172517575 172517697 -45519461 + L2 LINE L2 3134 3271 -1 319 349 47 18 chr3 172517716 172517885 -45519273 + L1ME4a LINE L1 3965 4138 -2008 382 262 29 19 chr3 172517886 172517989 -45519169 + L2 LINE L2 3189 3292 -21 597 298 28 0 chr3 172518122 172518300 -45518858 - MIR SINE MIR 0 262 80 425 344 77 28 chr3 172518304 172518667 -45518491 + L1ME4a LINE L1 4476 4856 -1290 495 311 89 54 chr3 172518740 172519776 -45517382 + L1ME4a LINE L1 4013 5084 -1062 256 264 44 11 chr3 172519781 172519872 -45517286 + L1ME4a LINE L1 5482 5575 -591 1792 127 117 6 chr3 172520022 172520337 -45516821 + L1PB3 LINE L1 5777 6123 -31 346 282 71 39 chr3 172520415 172520700 -45516458 + L1ME4a LINE L1 5614 5915 -206 835 260 134 21 chr3 172521255 172521636 -45515522 + L1ME4a LINE L1 5380 5803 -318 2832 0 0 3 chr3 172521690 172521997 -45515161 + AluYa5 SINE Alu 1 306 -5 416 76 0 15 chr3 172521997 172522063 -45515095 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 234 212 153 12 chr3 172522257 172522342 -45514816 + L1ME4a LINE L1 5973 6069 -52 26 0 0 0 chr3 172523060 172523086 -45514072 + AT_rich Low_complexity Low_complexity 1 26 0 238 263 179 21 chr3 172523661 172523756 -45513402 - L2 LINE L2 0 3272 3163 193 200 0 0 chr3 172523843 172523878 -45513280 - L2 LINE L2 -253 3060 3026 202 239 0 0 chr3 172523922 172523968 -45513190 + A-rich Low_complexity Low_complexity 1 46 0 412 152 95 63 chr3 172524004 172524162 -45512996 - Charlie7 DNA MER1_type -23 2589 2427 263 296 23 0 chr3 172524152 172524240 -45512918 - Charlie7 DNA MER1_type -2511 101 12 * 1409 295 180 40 chr3 172524242 172524402 -45512756 - L2 LINE L2 -428 2886 2750 1731 183 30 25 chr3 172524402 172524763 -45512395 - MLT1A1 LTR MaLR -2 363 1 1409 295 180 40 chr3 172524763 172525712 -45511446 - L2 LINE L2 -564 2750 1621 717 280 59 3 chr3 172527000 172527220 -45509938 + MIR SINE MIR 21 248 -14 199 231 0 108 chr3 172527408 172527473 -45509685 + L2 LINE L2 3200 3257 -15 2008 154 0 3 chr3 172527512 172527824 -45509334 - AluJb SINE Alu -1 311 1 500 291 95 24 chr3 172527828 172528123 -45509035 - MARNA DNA Mariner -231 355 40 207 346 38 38 chr3 172528399 172528532 -45508626 - L3b LINE CR1 -168 1415 1283 247 346 44 38 chr3 172528548 172528707 -45508451 + MER5A DNA MER1_type 8 167 -22 573 280 35 20 chr3 172528726 172528963 -45508195 + MIR SINE MIR 1 240 -22 794 160 0 8 chr3 172529991 172530116 -45507042 - FLAM_C SINE Alu -9 124 1 358 309 32 41 chr3 172530222 172530365 -45506793 - MIR SINE MIR -64 144 4 260 251 33 85 chr3 172530949 172531121 -45506037 - L1ME3A LINE L1 -223 5947 5785 1983 141 0 0 chr3 172531121 172531429 -45505729 - AluSx SINE Alu 0 308 1 260 251 33 85 chr3 172531429 172531466 -45505692 - L1ME3A LINE L1 -385 5785 5748 874 137 0 14 chr3 172531646 172531785 -45505373 - FRAM SINE Alu -8 168 32 327 234 129 113 chr3 172531877 172532258 -45504900 + LTR68 LTR ERV1 71 457 -283 295 299 70 49 chr3 172532397 172532681 -45504477 + L1ME3A LINE L1 5611 5900 -270 2034 103 39 35 chr3 172534088 172534400 -45502758 - AluSq SINE Alu 0 313 1 1887 155 17 0 chr3 172534402 172534692 -45502466 - AluSx SINE Alu -17 295 1 1922 163 0 7 chr3 172535127 172535427 -45501731 - AluJb SINE Alu -14 298 1 191 374 93 7 chr3 172536429 172536568 -45500590 + L3b LINE CR1 1428 1578 -5 807 191 11 66 chr3 172537319 172537502 -45499656 + AluJo SINE Alu 110 282 -30 378 274 47 28 chr3 172537657 172537763 -45499395 + MIR SINE MIR 45 152 -110 1852 141 10 20 chr3 172537820 172538117 -45499041 + AluJb SINE Alu 1 294 -18 203 32 65 0 chr3 172538119 172538150 -45499008 + (CAATA)n Simple_repeat Simple_repeat 2 34 0 727 251 96 0 chr3 172538699 172538886 -45498272 + MIR SINE MIR 52 256 -6 180 77 0 0 chr3 172539131 172539157 -45498001 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 1817 163 3 3 chr3 172539157 172539441 -45497717 - AluSx SINE Alu -28 284 1 527 310 70 80 chr3 172540753 172540867 -45496291 + HAL1 LINE L1 13 127 -2380 2343 78 3 3 chr3 172540867 172541161 -45495997 + AluSc SINE Alu 1 294 -15 527 310 70 80 chr3 172541161 172541459 -45495699 + HAL1 LINE L1 127 421 -2086 359 266 65 0 chr3 172541543 172541667 -45495491 + HAL1 LINE L1 746 877 -1630 2105 127 16 3 chr3 172541913 172542242 -45494916 + AluSx SINE Alu 1 333 0 667 294 122 29 chr3 172542669 172543046 -45494112 - L2 LINE L2 -1 3312 2901 27 0 0 0 chr3 172544302 172544329 -45492829 + AT_rich Low_complexity Low_complexity 1 27 0 603 267 120 36 chr3 172544531 172544756 -45492402 - MIR SINE MIR -1 261 18 2738 205 3 40 chr3 172544807 172545382 -45491776 - MLT2B3 LTR ERVL 0 554 1 1596 204 122 11 chr3 172546477 172547042 -45490116 - Charlie2 DNA MER1_type -5 2857 2230 593 259 55 59 chr3 172547053 172547273 -45489885 - Charlie2 DNA MER1_type -2507 355 137 1535 218 116 74 chr3 172549034 172549603 -45487555 + MLT1E LTR MaLR 1 593 0 265 315 250 28 chr3 172549726 172550418 -45486740 - L2 LINE L2 -904 2410 1565 423 322 71 87 chr3 172550428 172550878 -45486280 - L2 LINE L2 0 3272 2830 408 327 106 58 chr3 172551012 172551410 -45485748 - L2 LINE L2 -550 2764 2348 975 263 89 13 chr3 172553017 172553408 -45483750 - HsTC2 DNA Tc2 -1452 446 26 4179 149 67 26 chr3 172553781 172554840 -45482318 - L1PA7 LINE L1 -3 6151 5050 4081 170 19 0 chr3 172554836 172555626 -45481532 + L1PA7 LINE L1 4231 5035 -1111 * 644 36 12 0 chr3 172556757 172556840 -45480318 + (TC)n Simple_repeat Simple_repeat 2 85 0 336 336 34 20 chr3 172557437 172557583 -45479575 - L3 LINE CR1 -1 1576 1429 322 259 18 36 chr3 172557770 172557882 -45479276 - L3 LINE CR1 -216 1361 1252 1027 162 0 0 chr3 172557912 172558060 -45479098 + FAM SINE Alu 1 148 -37 824 129 21 17 chr3 172558060 172558300 -45478858 + GA-rich Low_complexity Low_complexity 1 241 0 1842 168 18 58 chr3 172558399 172558779 -45478379 + MLT1A1 LTR MaLR 1 365 0 546 332 39 58 chr3 172558789 172559507 -45477651 - L2 LINE L2 -1 3271 2494 1203 271 66 3 chr3 172560006 172560368 -45476790 + LTR16A LTR ERVL 57 441 -9 879 213 0 18 chr3 172561003 172561172 -45475986 - FRAM SINE Alu 0 166 1 940 206 0 18 chr3 172561211 172561381 -45475777 + FRAM SINE Alu 1 163 -13 2166 115 3 10 chr3 172562235 172562540 -45474618 + AluSx SINE Alu 1 303 -9 369 0 0 0 chr3 172562781 172562822 -45474336 + (TG)n Simple_repeat Simple_repeat 2 42 0 5414 184 103 15 chr3 172563498 172564835 -45472323 + Charlie1a DNA MER1_type 1 1455 0 487 295 85 25 chr3 172564840 172565206 -45471952 - L1ME LINE L1 -511 5651 5264 1946 133 10 26 chr3 172565234 172565542 -45471616 - AluJb SINE Alu -4 308 6 427 239 205 0 chr3 172565583 172565788 -45471370 - L1ME2 LINE L1 0 6164 5918 932 106 23 15 chr3 172565789 172565921 -45471237 + AluSq/x SINE Alu 1 133 -179 1385 187 10 3 chr3 172565927 172566221 -45470937 - L1ME2 LINE L1 -240 5924 5629 715 233 66 89 chr3 172566241 172566582 -45470576 - L1MEd LINE L1 -5020 1099 771 2118 152 3 0 chr3 172566582 172566885 -45470273 - AluSx SINE Alu -8 304 1 715 233 66 89 chr3 172566885 172567015 -45470143 - L1MEd LINE L1 -5348 771 639 28 61 0 0 chr3 172567015 172567064 -45470094 + AT_rich Low_complexity Low_complexity 1 49 0 1068 283 159 13 chr3 172567605 172568132 -45469026 - L1MEd LINE L1 -5514 605 2 1647 171 23 89 chr3 172569066 172569457 -45467701 + MLT1A1 LTR MaLR 1 365 0 4241 123 15 60 chr3 172570105 172571003 -45466155 + L1MA8 LINE L1 5386 6219 -72 550 327 68 20 chr3 172572390 172572833 -45464325 + L1M4 LINE L1 4814 5277 -869 2014 153 0 3 chr3 172572843 172573143 -45464015 + AluSx SINE Alu 3 301 -11 35 41 0 0 chr3 172573207 172573256 -45463902 + AT_rich Low_complexity Low_complexity 1 49 0 305 364 116 0 chr3 172573681 172573931 -45463227 - L2 LINE L2 -560 2754 2476 21 0 0 0 chr3 172574735 172574756 -45462402 + AT_rich Low_complexity Low_complexity 1 21 0 2159 137 0 9 chr3 172575160 172575475 -45461683 + AluSx SINE Alu 1 312 0 438 266 142 24 chr3 172576492 172576661 -45460497 + MIR SINE MIR 60 248 -14 237 349 171 23 chr3 172576664 172577266 -45459892 + L2 LINE L2 2052 2742 -572 356 153 82 35 chr3 172577620 172577705 -45459453 - MLT1I LTR MaLR -6 403 315 266 269 112 76 chr3 172579800 172580049 -45457109 - L2 LINE L2 -2 3311 3054 2940 287 157 15 chr3 172580391 172581508 -45455650 - L2 LINE L2 -735 2579 1253 2450 151 26 16 chr3 172581508 172581932 -45455226 + MSTA LTR MaLR 1 428 0 2940 287 157 15 chr3 172581932 172582105 -45455053 - L2 LINE L2 -2061 1253 1106 380 309 17 13 chr3 172582521 172582775 -45454383 - MLT1H LTR MaLR -139 270 47 384 236 52 20 chr3 172583558 172583719 -45453439 + MLT1H LTR MaLR 60 260 -229 210 255 0 20 chr3 172585383 172585434 -45451724 + CT-rich Low_complexity Low_complexity 3 52 0 1827 165 100 0 chr3 172585699 172586038 -45451120 - MLT2B3 LTR ERVL -181 373 1 1524 213 100 2 chr3 172586038 172586296 -45450862 + L1MC4 LINE L1 7464 7776 -266 1502 187 0 12 chr3 172586296 172586553 -45450605 + AluJo SINE Alu 1 254 -58 1524 213 100 2 chr3 172586553 172586694 -45450464 + L1MC4 LINE L1 7776 7902 -140 21 36 0 0 chr3 172586750 172586778 -45450380 + AT_rich Low_complexity Low_complexity 1 28 0 266 158 0 18 chr3 172587690 172587747 -45449411 + L1ME4a LINE L1 6054 6109 -12 1416 206 20 0 chr3 172589250 172589502 -45447656 + AluJb SINE Alu 21 277 -35 204 40 0 0 chr3 172589510 172589535 -45447623 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 242 380 73 39 chr3 172590325 172590504 -45446654 - L2 LINE L2 -9 3263 3079 * 392 281 25 58 chr3 172590473 172590594 -45446564 + MIR SINE MIR 8 124 -138 309 125 83 14 chr3 172590595 172590667 -45446491 - L1MCa LINE L1 -4355 2071 1995 228 197 33 33 chr3 172590673 172590734 -45446424 + (CATA)n Simple_repeat Simple_repeat 2 62 0 308 215 114 0 chr3 172590738 172590817 -45446341 + MIR SINE MIR 154 241 -21 21 57 0 0 chr3 172591171 172591206 -45445952 + AT_rich Low_complexity Low_complexity 1 35 0 2454 94 0 0 chr3 172591328 172591636 -45445522 + AluSg SINE Alu 1 308 -2 1879 137 6 75 chr3 172592486 172592634 -45444524 + AluJo SINE Alu 1 117 -195 234 0 0 0 chr3 172592634 172592660 -45444498 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1879 137 6 75 chr3 172592660 172592832 -45444326 + AluJo SINE Alu 117 299 -13 794 165 8 8 chr3 172593757 172593890 -45443268 + FLAM_A SINE Alu 1 133 0 2061 150 0 6 chr3 172593894 172594208 -45442950 + AluSx SINE Alu 1 312 0 21 0 0 0 chr3 172594345 172594366 -45442792 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 172594505 172594527 -45442631 + AT_rich Low_complexity Low_complexity 1 22 0 1586 254 87 42 chr3 172594706 172594920 -45442238 + HAL1 LINE L1 1288 1491 -1016 2365 109 0 0 chr3 172594920 172595224 -45441934 + AluSx SINE Alu 1 304 -8 1586 254 87 42 chr3 172595224 172595731 -45441427 + HAL1 LINE L1 1491 2042 -465 308 236 11 22 chr3 172595728 172595769 -45441389 + L1MC4 LINE L1 7646 7686 -356 * 1935 153 0 13 chr3 172595769 172596069 -45441089 + AluSx SINE Alu 1 296 -16 308 236 11 22 chr3 172596069 172596116 -45441042 + L1MC4 LINE L1 7686 7733 -309 7370 153 17 10 chr3 172596145 172596793 -45440365 - L1PA15 LINE L1 -6 6159 5517 2590 106 8 0 chr3 172596793 172597171 -45439987 - L1PA10 LINE L1 -1 6167 5787 7370 153 17 10 chr3 172597171 172598748 -45438410 - L1PA15 LINE L1 -648 5517 3867 397 102 0 0 chr3 172598752 172598811 -45438347 - MER4B LTR ERV1 0 610 552 16257 45 8 0 chr3 172598811 172600939 -45436219 + L1P LINE L1 2778 4921 -1225 663 23 69 35 chr3 172801548 172801721 -45235437 + (TA)n Simple_repeat Simple_repeat 2 180 0 200 208 21 0 chr3 172801932 172801980 -45235178 + (CACCAT)n Simple_repeat Simple_repeat 2 50 0 2488 40 0 49 chr3 172802124 172802451 -45234707 - AluY SINE Alu 0 311 1 236 338 50 14 chr3 172802598 172802737 -45234421 + L2 LINE L2 2616 2759 -555 1211 198 0 16 chr3 172802737 172802979 -45234179 - MLT1D LTR MaLR 0 505 268 292 234 208 0 chr3 172803044 172803121 -45234037 + L2 LINE L2 3220 3312 -1 280 333 147 13 chr3 172803265 172803415 -45233743 + MIR SINE MIR 20 189 -73 634 349 105 37 chr3 172806455 172807383 -45229775 + L2 LINE L2 2255 3254 -18 466 348 103 45 chr3 172808029 172808609 -45228549 + L2 LINE L2 2249 2862 -452 1338 211 166 47 chr3 172811308 172811759 -45225399 - MLT1D LTR MaLR 0 505 1 214 217 0 0 chr3 172811879 172811925 -45225233 - L2 LINE L2 -344 2970 2925 264 200 0 0 chr3 172812365 172812425 -45224733 + (TA)n Simple_repeat Simple_repeat 2 61 0 215 291 58 39 chr3 172815578 172815681 -45221477 + L2 LINE L2 3199 3303 -10 1884 142 3 24 chr3 172815918 172816213 -45220945 - AluSx SINE Alu -23 289 1 1906 178 83 20 chr3 172816834 172817277 -45219881 + L1MB8 LINE L1 5563 6033 -145 959 124 90 15 chr3 172817307 172817508 -45219650 - L1PA7 LINE L1 0 6154 5939 346 277 95 61 chr3 172819632 172819780 -45217378 - MIR SINE MIR -13 249 97 278 208 0 94 chr3 172819897 172820003 -45217155 - Charlie7 DNA MER1_type -1 2611 2516 901 253 59 46 chr3 172820022 172820565 -45216593 - Charlie7 DNA MER1_type -1928 684 99 310 247 62 10 chr3 172822096 172822193 -45214965 + L1ME4a LINE L1 5962 6063 -58 238 119 34 0 chr3 172822213 172822272 -45214886 - L1MA4 LINE L1 -5 6295 6235 624 93 21 0 chr3 172822277 172822374 -45214784 - L1MA3 LINE L1 0 6305 6207 5198 154 7 4 chr3 172822384 172823337 -45213821 - L1 LINE L1 -1202 4944 3989 5089 76 3 3 chr3 172823447 172824540 -45212618 + L1PA7 LINE L1 4860 5953 -201 320 281 88 111 chr3 172825316 172825657 -45211501 - L1M2 LINE L1 -5498 1351 1019 417 323 62 99 chr3 172825959 172826473 -45210685 + L3 LINE CR1 576 1070 -507 1665 129 105 59 chr3 172826586 172826959 -45210199 + MLT1B LTR MaLR 1 390 0 398 258 168 7 chr3 172826990 172827145 -45210013 + MIR SINE MIR 13 192 -70 286 216 40 14 chr3 172827259 172827333 -45209825 - MLT1I LTR MaLR -225 184 109 200 269 0 0 chr3 172828193 172828245 -45208913 + (TG)n Simple_repeat Simple_repeat 1 52 0 910 191 34 6 chr3 172828703 172828881 -45208277 - MER5A DNA MER1_type 0 189 7 438 286 7 52 chr3 172828999 172829153 -45208005 + MIR SINE MIR 2 148 -114 2048 131 7 0 chr3 172829648 172829945 -45207213 + AluSx SINE Alu 1 299 -13 488 297 81 14 chr3 172830242 172830451 -45206707 - MIR SINE MIR -3 259 37 243 0 0 0 chr3 172831461 172831488 -45205670 + (CA)n Simple_repeat Simple_repeat 1 27 0 541 261 22 0 chr3 172832205 172832343 -45204815 + MER58A DNA MER1_type 1 141 0 259 151 75 0 chr3 172832343 172832395 -45204763 + MER58A DNA MER1_type 169 224 0 495 225 108 0 chr3 172832626 172832746 -45204412 + MER94 DNA DNA 2 134 0 320 307 65 55 chr3 172833515 172833771 -45203387 - MIR3 SINE MIR -1 261 3 1690 157 0 52 chr3 172834013 172834411 -45202747 + AluJb SINE Alu 1 382 0 850 275 66 55 chr3 172834462 172834950 -45202208 - MLT1J LTR MaLR -18 493 1 263 314 49 10 chr3 172835057 172835159 -45201999 - MIR SINE MIR -85 177 72 7052 51 18 0 chr3 172835212 172836185 -45200973 - L1PA7 LINE L1 0 6154 5177 2293 109 3 3 chr3 172836361 172836673 -45200485 - AluSp SINE Alu 0 313 2 231 276 115 0 chr3 172836716 172836803 -45200355 - MIR3 SINE MIR -8 200 104 548 157 14 14 chr3 172837814 172837896 -45199262 + GA-rich Low_complexity Low_complexity 1 85 -55 3588 134 41 24 chr3 172837896 172838528 -45198630 + LTR48B LTR ERV1 2 644 0 548 157 14 14 chr3 172838528 172838585 -45198573 + GA-rich Low_complexity Low_complexity 84 140 0 210 309 12 12 chr3 172840175 172840256 -45196902 - MIR3 SINE MIR -3 205 125 724 272 127 0 chr3 172840260 172840536 -45196622 - LTR33 LTR ERVL -3 518 208 344 163 12 0 chr3 172840537 172840623 -45196535 + (TG)n Simple_repeat Simple_repeat 1 87 0 369 294 85 17 chr3 172840645 172840822 -45196336 - LTR33 LTR ERVL -332 189 1 256 265 145 0 chr3 172840822 172840905 -45196253 - MIR SINE MIR -80 128 34 416 261 71 97 chr3 172841224 172841564 -45195594 + MARNA DNA Mariner 73 400 -186 1315 206 115 73 chr3 172841564 172842058 -45195100 - MLT2B2 LTR ERVL 0 515 1 416 261 71 97 chr3 172842058 172842169 -45194989 + MARNA DNA Mariner 400 512 -74 310 147 191 0 chr3 172842374 172842442 -45194716 - Tigger5 DNA MER2_type -1 2322 2242 * 399 188 0 12 chr3 172842432 172842512 -45194646 + Tigger5 DNA MER2_type 2242 2320 -3 2048 73 80 4 chr3 172842615 172842890 -45194268 - AluY SINE Alu -15 296 1 2248 101 20 0 chr3 172843127 172843425 -45193733 - AluSx SINE Alu -8 304 1 337 319 75 31 chr3 172844569 172844729 -45192429 + MIR SINE MIR 48 214 -48 285 315 114 19 chr3 172845468 172845696 -45191462 + MIR SINE MIR 7 255 -7 1685 43 9 0 chr3 172846338 172846549 -45190609 + L1PA4 LINE L1 5943 6155 0 446 292 161 29 chr3 172847175 172847559 -45189599 - LTR67 LTR ERVL -8 549 115 242 273 99 66 chr3 172849811 172849932 -45187226 - L2 LINE L2 -2 3270 3146 1808 209 44 15 chr3 172849938 172850392 -45186766 - MLT1C LTR MaLR 0 467 1 638 165 48 139 chr3 172850998 172851228 -45185930 + MER93b LTR ERV1 1 209 -164 654 205 81 0 chr3 172851231 172851392 -45185766 + MER2 DNA MER2_type 1 174 -171 254 257 114 0 chr3 172851477 172851547 -45185611 + MER2 DNA MER2_type 268 345 0 266 143 143 55 chr3 172851608 172851699 -45185459 + MER57A LTR ERV1 300 398 -5 6370 84 13 9 chr3 172852375 172853632 -45183526 + L1PA14 LINE L1 4897 6158 -3 2035 118 0 11 chr3 172853678 172853986 -45183172 + AluSx SINE Alu 1 305 0 1904 167 14 20 chr3 172854448 172854822 -45182336 + MLT1A1 LTR MaLR 2 365 0 862 258 5 0 chr3 172855053 172855239 -45181919 - MIR SINE MIR -5 257 71 549 293 91 35 chr3 172855706 172856112 -45181046 + L1MC/D LINE L1 5372 5800 -2008 40518 40 23 2 chr3 172856310 172862336 -45174822 - L1PA4 LINE L1 -2 6153 4 2637 124 0 132 chr3 172862335 172862947 -45174211 - L1PB1 LINE L1 -46 6105 5575 * 10574 194 23 15 chr3 172863798 172864785 -45172373 + L1PA16 LINE L1 2510 3488 -2678 180 0 0 0 chr3 172864785 172864805 -45172353 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 10574 194 23 15 chr3 172864805 172867446 -45169712 + L1PA16 LINE L1 3488 6158 -8 405 324 22 52 chr3 172868874 172869067 -45168091 - MIR SINE MIR -51 211 23 1550 183 103 38 chr3 172870887 172871334 -45165824 - MLT1D LTR MaLR -2 503 28 198 224 0 0 chr3 172873267 172873316 -45163842 + (CA)n Simple_repeat Simple_repeat 2 50 0 14554 133 24 12 chr3 172873696 172876048 -45161110 - Tigger1 DNA MER2_type 0 2418 36 229 47 47 23 chr3 172876048 172876091 -45161067 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 14554 133 24 12 chr3 172876091 172876128 -45161030 - Tigger1 DNA MER2_type -2382 36 1 439 119 0 107 chr3 172876637 172876721 -45160437 + MER20 DNA MER1_type 4 78 -141 448 265 60 20 chr3 172876799 172876950 -45160208 + MIR SINE MIR 106 262 0 1188 195 76 0 chr3 172877245 172877552 -45159606 - MER33 DNA MER1_type -5 319 1 277 313 0 50 chr3 172877993 172878092 -45159066 + MIR3 SINE MIR 112 205 -3 * 281 317 186 12 chr3 172878091 172878252 -45158906 + L3 LINE CR1 265 453 -1124 191 162 27 0 chr3 172878288 172878325 -45158833 - L2 LINE L2 -3 3310 3273 4924 117 32 11 chr3 172878356 172878542 -45158616 - L1PB3 LINE L1 -1 6153 5972 2709 7 3 0 chr3 172878542 172878839 -45158319 - AluYa5 SINE Alu -13 298 1 4924 117 32 11 chr3 172878839 172879785 -45157373 - L1PB3 LINE L1 -182 5972 5017 223 269 0 0 chr3 172880100 172880152 -45157006 - MER5A DNA MER1_type 0 189 138 216 333 0 0 chr3 172882220 172882280 -45154878 + CT-rich Low_complexity Low_complexity 3 62 0 283 295 158 6 chr3 172882885 172883068 -45154090 + MIR SINE MIR 8 218 -44 202 200 0 43 chr3 172883076 172883146 -45154012 + (ATG)n Simple_repeat Simple_repeat 3 69 0 355 253 88 11 chr3 172883171 172883262 -45153896 + MIR SINE MIR 2 99 -163 1780 230 111 31 chr3 172883263 172883806 -45153352 - MLT1E LTR MaLR -1 592 7 665 249 41 12 chr3 172883806 172883975 -45153183 + MIR SINE MIR 89 262 0 289 339 28 0 chr3 172884149 172884258 -45152900 + MIR3 SINE MIR 44 155 -53 839 260 58 72 chr3 172885703 172886241 -45150917 - Charlie7 DNA MER1_type -2050 562 33 513 306 58 6 chr3 172886868 172887041 -45150117 + MIR SINE MIR 81 262 0 504 240 92 30 chr3 172887507 172887851 -45149307 - MLT1J2 LTR MaLR -13 437 46 1816 156 55 27 chr3 172888582 172888947 -45148211 - THE1C LTR MaLR 0 375 1 1505 253 148 12 chr3 172890252 172891166 -45145992 - L2 LINE L2 0 3313 2262 21 0 0 0 chr3 172892030 172892051 -45145107 + AT_rich Low_complexity Low_complexity 1 21 0 331 273 102 58 chr3 172892299 172892617 -45144541 + L1MC4a LINE L1 4346 4649 -1497 1719 160 28 3 chr3 172892617 172892894 -45144264 + AluSx SINE Alu 1 285 -23 192 77 0 0 chr3 172892894 172892920 -45144238 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 331 273 102 58 chr3 172892924 172893285 -45143873 + L1MC4a LINE L1 4649 5051 -1095 2459 99 0 0 chr3 172893320 172893633 -45143525 - AluSq SINE Alu 0 313 1 787 294 80 13 chr3 172893872 172894412 -45142746 + L1MC4a LINE L1 5351 5926 -1882 24 0 0 0 chr3 172894636 172894660 -45142498 + AT_rich Low_complexity Low_complexity 1 24 0 1084 235 48 70 chr3 172894862 172895509 -45141649 + L1MC2 LINE L1 4069 4701 -1445 711 231 131 9 chr3 172895510 172895612 -45141546 + LTR16A1 LTR ERVL 201 289 -168 2242 206 48 8 chr3 172895612 172896111 -45141047 + LTR40a LTR ERVL 1 519 0 711 231 131 9 chr3 172896111 172896237 -45140921 + LTR16A1 LTR ERVL 289 457 0 1747 153 17 17 chr3 172896306 172896607 -45140551 - AluJo SINE Alu -11 301 1 4276 18 0 0 chr3 172897502 172897991 -45139167 + L1PA2 LINE L1 5665 6153 -2 259 148 0 33 chr3 172897996 172898057 -45139101 + L1PB1 LINE L1 6090 6148 -3 1464 128 46 122 chr3 172898070 172898448 -45138710 - THE1C LTR MaLR -27 401 1 358 357 0 23 chr3 172898556 172898685 -45138473 + L2 LINE L2 3147 3272 0 186 361 28 0 chr3 172898798 172898870 -45138288 - L2 LINE L2 -8 3305 3232 286 376 32 32 chr3 172898977 172899134 -45138024 - L2 LINE L2 -202 3070 2914 5564 175 33 19 chr3 172899820 172901151 -45136007 + L1MC2 LINE L1 4997 6344 0 383 337 86 51 chr3 172901491 172901886 -45135272 + L1MEd LINE L1 849 1257 -4862 6463 193 35 30 chr3 172901945 172904363 -45132795 + L1M3f LINE L1 2 2406 -3922 1734 197 10 3 chr3 172904363 172904672 -45132486 + AluJb SINE Alu 1 311 -1 6463 193 35 30 chr3 172904672 172905677 -45131481 + L1M3f LINE L1 2406 3443 -2885 1979 149 3 3 chr3 172905677 172905972 -45131186 + AluSx SINE Alu 1 295 -17 6463 193 35 30 chr3 172905972 172906103 -45131055 + L1M3f LINE L1 3443 3572 -2756 335 247 62 10 chr3 172907107 172907204 -45129954 + L1ME4a LINE L1 5962 6063 -58 251 119 34 0 chr3 172907224 172907283 -45129875 - L1MA4 LINE L1 -5 6295 6235 603 103 21 0 chr3 172907288 172907385 -45129773 - L1MA3 LINE L1 0 6305 6207 5224 171 11 1 chr3 172907395 172908366 -45128792 - L1 LINE L1 -1202 4944 3964 2555 219 108 81 chr3 172908377 172909302 -45127856 + L1M3f LINE L1 4012 5001 -1335 483 18 0 0 chr3 172909302 172909358 -45127800 + (TA)n Simple_repeat Simple_repeat 2 57 0 2555 219 108 81 chr3 172909358 172909876 -45127282 + L1M3f LINE L1 5001 5503 -833 7816 168 21 4 chr3 172909878 172912292 -45124866 - L1PB1 LINE L1 -8 6143 3697 2294 194 37 54 chr3 172912319 172912890 -45124268 + L1ME1 LINE L1 5273 5833 -333 420 215 56 9 chr3 172912933 172913040 -45124118 + L1ME1 LINE L1 5809 5920 -246 10767 127 27 36 chr3 172913040 172914714 -45122444 - Tigger2 DNA MER2_type 0 2718 1061 1926 156 10 0 chr3 172914714 172915009 -45122149 - AluSx SINE Alu -14 298 1 10767 127 27 36 chr3 172915009 172915152 -45122006 - Tigger2 DNA MER2_type -1657 1061 918 1456 180 57 18 chr3 172915154 172915437 -45121721 - AluJo SINE Alu -2 310 17 2773 241 92 84 chr3 172915457 172915930 -45121228 + L1M4 LINE L1 2238 2706 -3440 1347 152 4 8 chr3 172915930 172916167 -45120991 - L1MB7 LINE L1 -8 6176 5941 2773 241 92 84 chr3 172916167 172916505 -45120653 + L1M4 LINE L1 2706 3040 -3106 1422 192 49 11 chr3 172916505 172916791 -45120367 + AluJo SINE Alu 3 299 -13 2773 241 92 84 chr3 172916791 172916906 -45120252 + L1M4 LINE L1 3040 3153 -2993 780 183 0 0 chr3 172916906 172917026 -45120132 + FLAM_A SINE Alu 1 120 -13 2773 241 92 84 chr3 172917026 172917864 -45119294 + L1M4 LINE L1 3153 4017 -2129 42544 44 2 0 chr3 172917979 172923190 -45113968 - L1P LINE L1 -926 5220 1 443 256 123 14 chr3 172923251 172923544 -45113614 + L1ME4a LINE L1 5793 6117 -4 823 254 53 4 chr3 172925412 172925676 -45111482 + MER113 DNA MER1_type? 89 365 -156 21 0 0 0 chr3 172926033 172926054 -45111104 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr3 172926204 172926225 -45110933 + (A)n Simple_repeat Simple_repeat 1 21 0 312 222 0 0 chr3 172927031 172927103 -45110055 + (TG)n Simple_repeat Simple_repeat 2 73 0 325 283 95 35 chr3 172927243 172927399 -45109759 + MIR3 SINE MIR 42 187 -25 975 178 0 0 chr3 172928994 172929146 -45108012 + AluSg/x SINE Alu 138 289 -23 1338 142 0 20 chr3 172929163 172929367 -45107791 + AluSg/x SINE Alu 83 282 -30 1214 100 0 12 chr3 172929374 172929544 -45107614 + MLT1C LTR MaLR 300 467 0 259 349 36 0 chr3 172929579 172929662 -45107496 - MIR SINE MIR -157 105 20 228 326 0 0 chr3 172929822 172929908 -45107250 + L1MC4 LINE L1 6614 6699 -1343 246 32 0 0 chr3 172929908 172929939 -45107219 + (GA)n Simple_repeat Simple_repeat 2 32 0 2154 115 0 0 chr3 172932202 172932498 -45104660 - AluYa5 SINE Alu -15 296 1 306 233 170 82 chr3 172932765 172932850 -45104308 - MIR SINE MIR -19 243 167 2410 143 48 33 chr3 172932850 172933310 -45103848 + MLT1C LTR MaLR 1 467 0 306 233 170 82 chr3 172933310 172933430 -45103728 - MIR SINE MIR -95 167 20 417 167 0 12 chr3 172935434 172935518 -45101640 - L1MB8 LINE L1 -1 6177 6095 4493 165 26 48 chr3 172935526 172936633 -45100525 - L1MB4 LINE L1 0 6180 5100 471 308 12 0 chr3 172937086 172937272 -45099886 - L1ME LINE L1 -381 5781 5594 1248 130 0 0 chr3 172940613 172940797 -45096361 + AluSq SINE Alu 130 313 0 2368 184 34 83 chr3 172940806 172941165 -45095993 - L1MC4 LINE L1 -1 8041 7731 1185 195 121 18 chr3 172941165 172941504 -45095654 + MLT1A2 LTR MaLR 1 374 0 2368 184 34 83 chr3 172941504 172941830 -45095328 - L1MC4 LINE L1 -311 7731 7390 22 0 0 0 chr3 172942149 172942171 -45094987 + AT_rich Low_complexity Low_complexity 1 22 0 244 233 83 0 chr3 172943027 172943087 -45094071 - MIR SINE MIR -124 138 74 513 272 136 0 chr3 172943088 172943279 -45093879 - MIR SINE MIR 0 262 46 378 303 33 16 chr3 172943487 172943609 -45093549 + L2 LINE L2 3138 3261 -11 261 186 23 23 chr3 172943611 172943697 -45093461 + GA-rich Low_complexity Low_complexity 3 88 0 297 0 0 0 chr3 172943794 172943827 -45093331 + (CA)n Simple_repeat Simple_repeat 2 34 0 274 245 25 80 chr3 172943856 172944056 -45093102 + L1ME4a LINE L1 5726 5914 -207 1684 241 21 11 chr3 172944196 172944632 -45092526 + L1MEc LINE L1 51 490 -5906 837 116 8 39 chr3 172944762 172944891 -45092267 - AluSq/x SINE Alu -187 125 1 1946 152 55 33 chr3 172944891 172945333 -45091825 - MER39 LTR ERV1 -103 604 108 768 249 33 0 chr3 172945336 172945581 -45091577 + L1MEc LINE L1 914 1166 -5230 204 40 0 0 chr3 172946466 172946491 -45090667 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr3 172949128 172949149 -45088009 + AT_rich Low_complexity Low_complexity 1 21 0 213 324 0 28 chr3 172949997 172950068 -45087090 + MIR SINE MIR 20 88 -174 500 298 57 0 chr3 172951665 172951789 -45085369 + L2 LINE L2 3140 3270 -2 2260 128 0 6 chr3 172951960 172952273 -45084885 - AluSx SINE Alu -1 311 1 500 251 80 12 chr3 172953489 172953652 -45083506 - MIR3 SINE MIR -5 203 30 26 0 0 0 chr3 172953711 172953737 -45083421 + AT_rich Low_complexity Low_complexity 1 26 0 311 333 93 7 chr3 172953790 172953940 -45083218 - MIR SINE MIR -56 206 44 286 305 52 13 chr3 172954098 172954252 -45082906 + MLT2C1 LTR ERVL 43 202 -195 * 2127 210 23 52 chr3 172954136 172954698 -45082460 + MLT1E2 LTR MaLR 79 624 -2 406 58 43 14 chr3 172955687 172955756 -45081402 - MADE1 DNA Mariner 0 80 10 1845 153 12 6 chr3 172955905 172956238 -45080920 + MER47A DNA MER2_type 1 335 -31 186 182 0 0 chr3 172956474 172956507 -45080651 - L2 LINE L2 -985 2329 2297 1817 196 21 9 chr3 172956509 172956892 -45080266 + MLT2D LTR ERVL 1 535 -19 268 216 27 0 chr3 172956900 172956974 -45080184 + (TA)n Simple_repeat Simple_repeat 1 76 0 270 92 0 92 chr3 172956977 172957042 -45080116 + MLT2B1 LTR ERVL 455 513 -7 863 291 172 39 chr3 172957043 172957666 -45079492 - L2 LINE L2 -1015 2299 1594 2385 71 0 3 chr3 172957699 172957995 -45079163 + AluY SINE Alu 1 295 -16 351 0 0 0 chr3 172958915 172958954 -45078204 + (TA)n Simple_repeat Simple_repeat 2 40 0 29 108 0 0 chr3 172958975 172959095 -45078063 + AT_rich Low_complexity Low_complexity 1 120 0 21 0 0 0 chr3 172959381 172959402 -45077756 + AT_rich Low_complexity Low_complexity 1 21 0 678 269 37 32 chr3 172959466 172959682 -45077476 - MIR SINE MIR 0 262 46 408 296 174 43 chr3 172959972 172960225 -45076933 - L2 LINE L2 -16 3297 3012 286 241 63 13 chr3 172960281 172960360 -45076798 - L2 LINE L2 0 3313 3231 1644 160 0 61 chr3 172961015 172961327 -45075831 - AluJo SINE Alu -17 295 3 366 219 0 0 chr3 172961330 172961394 -45075764 - AluJ/FLAM SINE Alu -238 64 1 2323 105 10 0 chr3 172961421 172961727 -45075431 + AluSc SINE Alu 1 309 0 236 100 25 0 chr3 172961729 172961769 -45075389 + (GGAAA)n Simple_repeat Simple_repeat 4 44 0 483 255 27 34 chr3 172965632 172965781 -45071377 + MIR3 SINE MIR 50 197 -11 291 327 18 9 chr3 172966544 172966654 -45070504 + L2 LINE L2 3158 3268 -4 2140 132 0 0 chr3 172966656 172966952 -45070206 + AluSx SINE Alu 1 296 -16 925 311 186 14 chr3 172967461 172968140 -45069018 - L2 LINE L2 -28 3285 2487 220 146 24 0 chr3 172969437 172969478 -45067680 + (TA)n Simple_repeat Simple_repeat 2 43 0 766 254 41 64 chr3 172970868 172971210 -45065948 - MER102b DNA MER1_type -1 340 7 5173 164 22 7 chr3 172971466 172973005 -45064153 + L1PB2 LINE L1 4125 5687 -464 2939 81 7 2 chr3 172973011 172973430 -45063728 + L1PB2 LINE L1 5724 6144 -7 25802 123 7 16 chr3 172973645 172978382 -45058776 - L1P3 LINE L1 -982 5479 764 258 261 65 33 chr3 172978835 172978927 -45058231 - MIR SINE MIR -50 212 118 771 273 39 7 chr3 172980026 172980348 -45056810 + L1MCa LINE L1 1511 2030 -4577 220 337 79 0 chr3 172980371 172980460 -45056698 - MIR SINE MIR -14 248 153 472 270 57 111 chr3 172980934 172981133 -45056025 + HAL1 LINE L1 826 1003 -1504 2494 67 0 0 chr3 172981133 172981432 -45055726 + AluY SINE Alu 2 300 -11 472 270 57 111 chr3 172981432 172981547 -45055611 + HAL1 LINE L1 1003 1123 -1384 26 30 0 0 chr3 172982512 172982545 -45054613 + AT_rich Low_complexity Low_complexity 1 33 0 352 248 23 30 chr3 172982792 172982925 -45054233 - MER103 DNA DNA -34 132 1 208 222 0 0 chr3 172982935 172982971 -45054187 + (TCCA)n Simple_repeat Simple_repeat 4 39 0 2619 132 29 2 chr3 172985656 172986072 -45051086 - MSTA LTR MaLR 0 428 2 289 323 62 81 chr3 172986121 172986282 -45050876 - MIR3 SINE MIR -48 160 3 772 226 11 6 chr3 172986397 172986574 -45050584 + MER5B DNA MER1_type 1 178 0 251 178 22 0 chr3 172986686 172986731 -45050427 + L2 LINE L2 3257 3302 -11 181 395 25 12 chr3 172987200 172987281 -45049877 + MIR SINE MIR 20 101 -107 412 269 94 64 chr3 172987603 172987901 -45049257 - MLT1I LTR MaLR -5 404 98 267 290 112 71 chr3 172988082 172988306 -45048852 - L2 LINE L2 -168 3104 2872 224 309 107 60 chr3 172988324 172988492 -45048666 + L2 LINE L2 2937 3112 -160 400 245 38 0 chr3 172988642 172988748 -45048410 + MER94 DNA DNA 8 117 -17 441 296 79 21 chr3 172988781 172988970 -45048188 - L2 LINE L2 -530 2784 2585 210 208 0 0 chr3 172988970 172989023 -45048135 + (CA)n Simple_repeat Simple_repeat 1 53 0 212 350 22 0 chr3 172990279 172990416 -45046742 - MIR SINE MIR -5 257 118 31 58 0 0 chr3 172990545 172990597 -45046561 + AT_rich Low_complexity Low_complexity 1 52 0 239 283 94 97 chr3 172990713 172991095 -45046063 - MLT1L LTR MaLR -232 383 3 287 264 66 46 chr3 172991557 172991807 -45045351 + MLT1L LTR MaLR 256 508 -3 191 357 89 0 chr3 172992077 172992189 -45044969 + MIR SINE MIR 97 218 -44 553 270 148 7 chr3 172992194 172992472 -45044686 - L2 LINE L2 -2 3311 2995 349 305 109 8 chr3 172992532 172992660 -45044498 - MIR SINE MIR -71 191 51 445 283 183 51 chr3 172993142 172993646 -45043512 - L2 LINE L2 -1 3312 2742 268 205 39 39 chr3 172994771 172994849 -45042309 - MIR3 SINE MIR -39 169 92 372 271 127 26 chr3 172995637 172995866 -45041292 + L1MC/D LINE L1 4983 5234 -912 650 293 91 35 chr3 172996105 172996511 -45040647 + L1MC/D LINE L1 5372 5800 -2008 7449 36 30 5 chr3 172996711 172998310 -45038848 - L1PA4 LINE L1 -4 6151 4530 7495 25 1 9 chr3 172998574 172999515 -45037643 + L1PA2 LINE L1 5221 6154 -1 522 103 0 0 chr3 172999878 172999956 -45037202 + (TG)n Simple_repeat Simple_repeat 2 79 0 1282 217 40 0 chr3 173050918 173051218 -44985940 - L1M4 LINE L1 -1360 4786 4475 5703 105 26 11 chr3 173051225 173052433 -44984725 - L1PB1 LINE L1 -2 6149 4932 189 0 0 0 chr3 173052597 173052618 -44984540 + (T)n Simple_repeat Simple_repeat 1 21 0 1048 299 72 0 chr3 173052894 173053215 -44983943 - L2 LINE L2 -598 2716 2373 285 266 26 18 chr3 173053414 173053527 -44983631 + CT-rich Low_complexity Low_complexity 3 116 0 357 273 10 10 chr3 173053527 173053626 -44983532 - MLT1J2 LTR MaLR -284 166 68 352 244 169 31 chr3 173053627 173053787 -44983371 - L1M4 LINE L1 -768 5378 5197 1685 130 87 4 chr3 173054179 173054455 -44982703 - AluJb SINE Alu -13 299 1 323 352 110 22 chr3 173055419 173055981 -44981177 + L2 LINE L2 2454 3059 -213 28 0 0 0 chr3 173056092 173056120 -44981038 + AT_rich Low_complexity Low_complexity 1 28 0 194 195 0 49 chr3 173056171 173056212 -44980946 + L2 LINE L2 3263 3301 -12 592 245 42 42 chr3 173057499 173057715 -44979443 + L1MA9 LINE L1 6058 6273 -39 22 0 0 0 chr3 173057803 173057825 -44979333 + AT_rich Low_complexity Low_complexity 1 22 0 2254 51 34 10 chr3 173058373 173058667 -44978491 + AluY SINE Alu 1 301 -10 254 297 109 78 chr3 173058667 173058795 -44978363 - L2 LINE L2 -2 3311 3180 21 0 0 0 chr3 173058800 173058821 -44978337 + AT_rich Low_complexity Low_complexity 1 21 0 518 293 44 78 chr3 173058821 173059115 -44978043 - L2 LINE L2 -989 2325 2042 690 246 80 57 chr3 173059221 173059639 -44977519 + MLT1G LTR MaLR 141 588 -2 783 71 0 0 chr3 173060545 173060643 -44976515 + L1P LINE L1 1 98 -6048 * 1357 33 0 21 chr3 173060641 173060972 -44976186 + L1P LINE L1 623 1074 -5072 1042 212 57 79 chr3 173061658 173062026 -44975132 - MLT1A2 LTR MaLR -13 361 2 195 191 147 29 chr3 173062590 173062658 -44974500 - MIR SINE MIR -110 152 77 530 188 246 0 chr3 173062900 173063038 -44974120 - MER5A DNA MER1_type 0 189 18 3931 143 28 27 chr3 173063447 173063949 -44973209 - L1MA4 LINE L1 -4 6478 5978 237 33 0 0 chr3 173063949 173063979 -44973179 + (TTG)n Simple_repeat Simple_repeat 1 30 0 1569 132 39 39 chr3 173063988 173064246 -44972912 - AluJo SINE Alu -54 258 1 3931 143 28 27 chr3 173064246 173064484 -44972674 - L1MA4 LINE L1 -511 5971 5727 12516 184 28 37 chr3 173064484 173069645 -44967513 - L1MA4 LINE L1 -1201 5127 10 205 316 13 0 chr3 173069650 173069729 -44967429 - MIR SINE MIR -6 256 177 540 0 0 0 chr3 173070089 173070149 -44967009 + (TA)n Simple_repeat Simple_repeat 2 61 0 3126 159 77 156 chr3 173070405 173071382 -44965776 + MER21A LTR ERV1 1 900 -31 396 289 35 0 chr3 173071410 173071552 -44965606 - Charlie8 DNA MER1_type -2183 234 88 7733 215 30 19 chr3 173073252 173076234 -44960924 + L1MB5 LINE L1 3159 6174 0 2695 220 67 33 chr3 173076237 173076782 -44960376 - L1ME1 LINE L1 -7 6228 5703 2009 139 3 13 chr3 173076782 173077085 -44960073 - AluSx SINE Alu -12 300 1 2695 220 67 33 chr3 173077085 173077718 -44959440 - L1ME1 LINE L1 -532 5703 5020 384 231 45 70 chr3 173077752 173077908 -44959250 - L1ME1 LINE L1 -4918 1478 1327 1138 240 29 26 chr3 173077908 173078258 -44958900 - L1M4 LINE L1 -1750 4396 4046 * 1997 281 44 8 chr3 173078247 173078842 -44958316 - L1ME1 LINE L1 -5745 651 36 1456 231 21 67 chr3 173078835 173079458 -44957700 - L1MEc LINE L1 -3299 2916 2323 * 2326 122 8 6 chr3 173079473 173079825 -44957333 - THE1A LTR MaLR 0 355 3 11434 95 10 4 chr3 173079827 173080900 -44956258 - THE1A-int LTR MaLR 0 1580 494 2281 95 0 19 chr3 173080900 173081215 -44955943 - AluSq SINE Alu -4 309 1 11434 95 10 4 chr3 173081215 173081710 -44955448 - THE1A-int LTR MaLR -1086 494 3 2375 113 8 8 chr3 173081712 173082067 -44955091 - THE1A LTR MaLR 0 355 1 754 273 79 71 chr3 173082067 173082700 -44954458 - L1MEc LINE L1 -5410 986 349 1541 164 24 3 chr3 173082741 173083039 -44954119 - L1MB1 LINE L1 0 6168 5865 4504 241 61 22 chr3 173083050 173085301 -44951857 - L1 LINE L1 -2550 5015 2707 26 30 0 0 chr3 173085309 173085342 -44951816 + AT_rich Low_complexity Low_complexity 1 33 0 1496 122 0 0 chr3 173085352 173085581 -44951577 - L1MA2 LINE L1 -15 6289 6061 3033 215 22 11 chr3 173085581 173086322 -44950836 - L1M4 LINE L1 -936 5210 4462 23 33 0 0 chr3 173086338 173086368 -44950790 + AT_rich Low_complexity Low_complexity 1 30 0 24 77 0 0 chr3 173086713 173086765 -44950393 + AT_rich Low_complexity Low_complexity 1 52 0 225 309 18 0 chr3 173087467 173087522 -44949636 + MIR SINE MIR 20 75 -133 268 303 141 0 chr3 173087597 173087696 -44949462 - MIR SINE MIR -63 145 33 565 187 9 0 chr3 173088443 173088550 -44948608 + MER53 DNA DNA 1 108 -81 208 234 213 32 chr3 173089492 173089586 -44947572 - MIR SINE MIR -1 261 151 210 179 205 39 chr3 173089985 173090063 -44947095 - MIR SINE MIR -63 145 55 222 295 274 11 chr3 173090131 173090226 -44946932 + L2 LINE L2 3153 3272 0 433 272 133 39 chr3 173094225 173094314 -44942844 + L1ME4a LINE L1 5273 5352 -769 1883 128 3 49 chr3 173094314 173094619 -44942539 + AluSx SINE Alu 9 299 -13 433 272 133 39 chr3 173094619 173094911 -44942247 + L1ME4a LINE L1 5352 5690 -431 366 254 25 17 chr3 173094964 173095082 -44942076 + L1ME4a LINE L1 5789 5907 -214 231 252 163 14 chr3 173095084 173095231 -44941927 + L1ME4a LINE L1 5947 6115 -6 204 40 0 0 chr3 173095595 173095620 -44941538 + (TA)n Simple_repeat Simple_repeat 1 25 0 27 0 0 0 chr3 173095836 173095863 -44941295 + AT_rich Low_complexity Low_complexity 1 27 0 1162 66 102 0 chr3 173096122 173096289 -44940869 + MLT2A1 LTR ERVL 1 184 -260 1907 181 82 32 chr3 173096289 173096753 -44940405 - LTR2B LTR ERV1 0 490 4 41514 190 5 11 chr3 173096756 173104609 -44932549 - HERVE LTR ERV1 -9 7804 1 1872 187 62 18 chr3 173104609 173105047 -44932111 - LTR2B LTR ERV1 0 490 34 1499 104 14 7 chr3 173105067 173105300 -44931858 + MLT2A1 LTR ERVL 178 475 -40 48 43 0 0 chr3 173105300 173105369 -44931789 + AT_rich Low_complexity Low_complexity 1 69 0 390 36 0 18 chr3 173105389 173105445 -44931713 + MLT2A1 LTR ERVL 390 444 0 305 132 132 0 chr3 173106078 173106146 -44931012 + L1PB4 LINE L1 6075 6151 -5 357 109 50 40 chr3 173108216 173108317 -44928841 + CT-rich Low_complexity Low_complexity 4 105 0 1806 141 53 27 chr3 173108320 173108619 -44928539 - AluSx SINE Alu -5 307 1 220 267 0 0 chr3 173109678 173109723 -44927435 - MIR SINE MIR -169 93 49 367 306 22 52 chr3 173109873 173110007 -44927151 - MIR SINE MIR -101 161 32 366 305 11 0 chr3 173110138 173110233 -44926925 - L2 LINE L2 0 3313 3218 604 108 0 0 chr3 173110319 173110402 -44926756 + AluY SINE Alu 214 296 -15 1880 118 18 0 chr3 173111065 173111379 -44925779 + AluSx SINE Alu 1 319 0 239 162 0 0 chr3 173111381 173111418 -44925740 - L2 LINE L2 -16 3256 3220 225 0 0 0 chr3 173112800 173112825 -44924333 + (CG)n Simple_repeat Simple_repeat 2 26 0 * 261 0 0 0 chr3 173112824 173112853 -44924305 + (CA)n Simple_repeat Simple_repeat 1 29 0 1068 181 148 111 chr3 173112886 173113371 -44923787 + MLT1D LTR MaLR 1 503 -2 260 296 112 32 chr3 173113418 173113543 -44923615 + MIR SINE MIR 49 183 -79 252 167 0 74 chr3 173113665 173113719 -44923439 + MIR SINE MIR 204 253 -9 319 303 61 3 chr3 173114285 173114431 -44922727 - MER20B DNA MER1_type -17 202 46 286 315 0 0 chr3 173114650 173114723 -44922435 + MIR SINE MIR 86 158 -104 343 286 77 58 chr3 173114792 173115053 -44922105 + MLT1J1 LTR MaLR 63 329 -121 181 338 0 0 chr3 173115210 173115281 -44921877 + MIR SINE MIR 188 258 -4 257 287 188 0 chr3 173115406 173115507 -44921651 - L2 LINE L2 -4 3268 3149 1720 149 56 7 chr3 173116744 173117032 -44920126 + AluSx SINE Alu 1 302 -10 638 260 54 99 chr3 173117444 173117817 -44919341 - MLT1J LTR MaLR -33 478 123 509 253 50 73 chr3 173117918 173118219 -44918939 - L1ME3A LINE L1 -266 5904 5611 7208 112 52 2 chr3 173118375 173119641 -44917517 + L1PBa LINE L1 1643 2971 -3892 1169 312 106 42 chr3 173121087 173121901 -44915257 - L2 LINE L2 -358 2956 2091 477 247 31 114 chr3 173122929 173123156 -44914002 + MIR SINE MIR 18 225 -37 308 314 153 15 chr3 173125223 173125497 -44911661 + L2 LINE L2 2652 2963 -351 243 0 0 0 chr3 173125680 173125707 -44911451 + (CTAG)n Simple_repeat Simple_repeat 2 28 0 311 265 25 74 chr3 173125882 173126044 -44911114 - MIR SINE MIR -5 257 104 965 244 0 5 chr3 173126054 173126259 -44910899 + MER58A DNA MER1_type 1 204 -20 546 43 0 0 chr3 173126906 173126975 -44910183 + (TG)n Simple_repeat Simple_repeat 1 69 0 381 22 0 0 chr3 173128355 173128401 -44908757 + (TG)n Simple_repeat Simple_repeat 2 47 0 240 250 22 11 chr3 173128663 173128755 -44908403 - MER113 DNA MER1_type? -423 98 6 690 322 73 3 chr3 173129364 173129749 -44907409 - L1ME3A LINE L1 -220 5950 5539 404 272 130 11 chr3 173129749 173129933 -44907225 + L1ME3A LINE L1 4384 4589 -1557 279 79 0 0 chr3 173129954 173129992 -44907166 + (TTCCC)n Simple_repeat Simple_repeat 4 41 0 1493 198 0 14 chr3 173129996 173130274 -44906884 - AluJb SINE Alu -38 274 1 701 281 78 24 chr3 173130303 173131529 -44905629 + L1ME3A LINE L1 4615 5960 -206 211 180 90 0 chr3 173131708 173131797 -44905361 + (TA)n Simple_repeat Simple_repeat 2 98 0 21 0 0 0 chr3 173131809 173131830 -44905328 + AT_rich Low_complexity Low_complexity 1 21 0 1746 117 53 8 chr3 173132029 173132293 -44904865 + AluSx SINE Alu 1 276 -36 222 37 0 0 chr3 173132294 173132321 -44904837 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 926 275 44 35 chr3 173133177 173133610 -44903548 - L1ME3A LINE L1 -232 5938 5502 2060 100 7 33 chr3 173133617 173133917 -44903241 - AluSg1 SINE Alu -17 292 1 24 32 0 0 chr3 173135051 173135082 -44902076 + AT_rich Low_complexity Low_complexity 1 31 0 558 303 58 40 chr3 173135558 173135810 -44901348 + L1ME LINE L1 663 909 -5392 2207 106 0 0 chr3 173135810 173136094 -44901064 + AluSg SINE Alu 1 284 -26 558 303 58 40 chr3 173136094 173136111 -44901047 + L1ME LINE L1 909 924 -5377 294 29 0 0 chr3 173136111 173136146 -44901012 + (TTA)n Simple_repeat Simple_repeat 3 37 0 558 303 58 40 chr3 173136146 173136614 -44900544 + L1ME LINE L1 924 1432 -4869 320 274 17 17 chr3 173136621 173136738 -44900420 - L1MCa LINE L1 -4346 2080 1964 1003 260 102 45 chr3 173136783 173137178 -44899980 + L1ME LINE L1 2113 2484 -3731 1915 152 10 7 chr3 173137178 173137481 -44899677 + AluJo SINE Alu 5 308 -4 1003 260 102 45 chr3 173137481 173138177 -44898981 + L1ME LINE L1 2484 3225 -2990 760 293 81 29 chr3 173138446 173139375 -44897783 + L1ME LINE L1 4223 5199 -1016 413 273 31 12 chr3 173139462 173139623 -44897535 + L1MC4a LINE L1 5765 5928 -1880 1473 194 24 31 chr3 173139634 173139928 -44897230 + AluJb SINE Alu 1 292 -20 371 326 93 29 chr3 173140237 173140654 -44896504 + L1ME LINE L1 5326 5769 -462 749 270 20 44 chr3 173140669 173140917 -44896241 - MIR SINE MIR -5 257 16 237 213 13 27 chr3 173140999 173141074 -44896084 + L1ME LINE L1 5830 5903 -330 * 244 109 40 19 chr3 173141064 173141126 -44896032 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 33 56 0 0 chr3 173141166 173141220 -44895938 + AT_rich Low_complexity Low_complexity 1 54 0 23 68 0 0 chr3 173141467 173141511 -44895647 + AT_rich Low_complexity Low_complexity 1 44 0 710 120 0 8 chr3 173141632 173141749 -44895409 + (TCCC)n Simple_repeat Simple_repeat 1 116 0 737 117 0 8 chr3 173142294 173142414 -44894744 + (TCCC)n Simple_repeat Simple_repeat 1 119 0 358 275 96 44 chr3 173142696 173142925 -44894233 + L1ME4a LINE L1 5712 5952 -169 35 0 0 0 chr3 173142970 173143005 -44894153 + AT_rich Low_complexity Low_complexity 1 35 0 510 306 53 1 chr3 173143585 173143769 -44893389 - L1MC/D LINE L1 -478 5643 5468 * 2872 220 57 37 chr3 173143765 173144306 -44892852 - L1ME1 LINE L1 -5 6161 5632 1530 122 8 13 chr3 173144306 173144543 -44892615 - MER46A DNA MER2_type 0 236 1 2872 220 57 37 chr3 173144543 173144671 -44892487 - L1ME1 LINE L1 -534 5632 5508 6738 59 17 0 chr3 173144671 173145871 -44891287 - L1PA8 LINE L1 -3 6169 4978 2872 220 57 37 chr3 173145871 173146572 -44890586 - L1ME1 LINE L1 -658 5508 4763 1146 282 44 7 chr3 173146567 173146999 -44890159 - L1ME1 LINE L1 -2473 3673 3226 * 362 253 64 55 chr3 173147519 173147721 -44889437 - LTR67 LTR ERVL -3 554 351 1348 268 39 76 chr3 173147901 173148713 -44888445 - L2 LINE L2 0 3313 2522 432 312 68 8 chr3 173148758 173148995 -44888163 - L2 LINE L2 -470 2844 2594 2400 247 40 14 chr3 173149054 173149625 -44887533 - MLT1E LTR MaLR 0 593 8 210 308 57 50 chr3 173149666 173149825 -44887333 - L2 LINE L2 -815 2499 2340 455 134 0 0 chr3 173149914 173149981 -44887177 + AluS SINE Alu 1 67 -246 428 299 118 32 chr3 173151010 173151474 -44885684 - MLT1K LTR MaLR -7 581 10 511 301 113 4 chr3 173154876 173155105 -44882053 - MIR SINE MIR -1 261 8 394 248 200 14 chr3 173156765 173156910 -44880248 + MIR SINE MIR 20 191 -71 233 271 0 29 chr3 173156961 173157031 -44880127 + (TATATG)n Simple_repeat Simple_repeat 6 73 0 348 298 207 16 chr3 173157323 173157511 -44879647 + MIR SINE MIR 35 258 -4 334 312 37 63 chr3 173157508 173157697 -44879461 - MIR SINE MIR -32 230 47 * 703 260 113 17 chr3 173158758 173158989 -44878169 + MIR SINE MIR 2 254 -8 208 254 0 36 chr3 173159504 173159559 -44877599 + MIR3 SINE MIR 151 203 -5 399 306 34 29 chr3 173163165 173163374 -44873784 - L3 LINE CR1 -166 1411 1202 326 299 58 26 chr3 173164151 173164305 -44872853 - L3 LINE CR1 -781 796 638 851 287 68 65 chr3 173164896 173165478 -44871680 - L1ME3A LINE L1 -293 5860 5273 296 309 72 28 chr3 173165600 173166072 -44871086 - L1ME3A LINE L1 -1396 4733 4241 1129 243 91 58 chr3 173166091 173166519 -44870639 - L2 LINE L2 -5 3308 2867 * 2627 229 132 91 chr3 173166515 173167732 -44869426 - L2 LINE L2 -338 2976 1711 1654 275 120 41 chr3 173167781 173169143 -44868015 - L1ME3A LINE L1 -1907 4222 2969 779 259 52 16 chr3 173169143 173169394 -44867764 - MIR SINE MIR -1 261 2 2086 112 35 0 chr3 173169398 173169683 -44867475 - AluSg SINE Alu -15 295 1 1654 275 120 41 chr3 173169683 173170055 -44867103 - L1ME3A LINE L1 -3162 2967 2345 480 257 87 59 chr3 173170065 173170353 -44866805 - L1ME3A LINE L1 -3988 2322 2027 2335 245 60 27 chr3 173170446 173171149 -44866009 + HsTC2c DNA MER2_type 4 729 0 818 226 7 0 chr3 173171435 173171590 -44865568 + FAM SINE Alu 3 158 -17 479 315 116 5 chr3 173171603 173171981 -44865177 - L1ME3A LINE L1 -4689 1621 1202 364 267 10 40 chr3 173172035 173172136 -44865022 - L2 LINE L2 -7 3306 3209 765 302 77 29 chr3 173172157 173172704 -44864454 - L1ME3A LINE L1 -5016 1103 531 285 29 0 0 chr3 173172744 173172778 -44864380 + (TG)n Simple_repeat Simple_repeat 1 34 0 3575 193 17 95 chr3 173172943 173173375 -44863783 + L1PA16 LINE L1 4186 4650 -1496 1931 146 10 10 chr3 173173375 173173676 -44863482 + AluSx SINE Alu 1 301 -11 3575 193 17 95 chr3 173173676 173174309 -44862849 + L1PA16 LINE L1 4650 5168 -978 1420 162 15 11 chr3 173174305 173174432 -44862726 - L1 LINE L1 -1355 4791 4666 * 297 0 0 0 chr3 173174432 173174465 -44862693 + (TG)n Simple_repeat Simple_repeat 2 34 0 1420 162 15 11 chr3 173174465 173174608 -44862550 - L1 LINE L1 -1480 4666 4520 5361 129 21 12 chr3 173174612 173175606 -44861552 + L1PA16 LINE L1 5164 6165 -1 497 244 23 17 chr3 173175608 173175780 -44861378 + L1ME LINE L1 1738 1910 -4516 748 92 28 14 chr3 173175791 173175933 -44861225 + (GAAA)n Simple_repeat Simple_repeat 4 147 0 854 254 44 0 chr3 173176003 173176251 -44860907 - MIR SINE MIR 0 262 4 1382 279 68 15 chr3 173177482 173177891 -44859267 - LTR16A LTR ERVL -13 437 7 437 299 48 18 chr3 173178046 173178328 -44858830 - MERVL LTR ERVL -1205 4280 3994 2031 200 55 25 chr3 173178385 173178875 -44858283 + MLT1D LTR MaLR 1 505 0 306 306 26 47 chr3 173178879 173179072 -44858086 - MERVL LTR ERVL -201 5284 5096 1011 344 77 23 chr3 173179200 173180383 -44856775 - MERVL LTR ERVL -908 4746 3458 1689 151 16 43 chr3 173180607 173180912 -44856246 + AluJo SINE Alu 1 297 -15 24 32 0 0 chr3 173181438 173181469 -44855689 + AT_rich Low_complexity Low_complexity 1 31 0 441 303 25 22 chr3 173181842 173182116 -44855042 + L1ME LINE L1 3998 4272 -2154 21 0 0 0 chr3 173182121 173182142 -44855016 + AT_rich Low_complexity Low_complexity 1 21 0 2193 110 7 0 chr3 173182533 173182832 -44854326 + AluY SINE Alu 6 306 -5 2935 118 11 0 chr3 173182945 173183385 -44853773 + L1PA13 LINE L1 5717 6161 -2 782 319 40 11 chr3 173184229 173184605 -44852553 + L1ME LINE L1 5626 6012 -389 221 398 48 0 chr3 173185176 173185279 -44851879 + L2 LINE L2 3127 3234 -38 262 239 22 87 chr3 173186103 173186195 -44850963 + MIR SINE MIR 58 143 -65 569 245 46 0 chr3 173186270 173186421 -44850737 - MER103 DNA DNA -7 159 2 276 99 0 183 chr3 173186932 173187003 -44850155 - MER33 DNA MER1_type 0 363 306 435 151 32 0 chr3 173187042 173187135 -44850023 + L1MB3 LINE L1 6087 6182 -1 791 187 100 12 chr3 173187151 173187279 -44849879 - MER33 DNA MER1_type -2312 273 158 1783 87 0 9 chr3 173187279 173187553 -44849605 - AluSg SINE Alu 0 326 55 791 187 100 12 chr3 173187553 173187664 -44849494 - MER33 DNA MER1_type -2427 158 12 213 350 32 64 chr3 173187664 173187821 -44849337 - L2 LINE L2 -203 3069 2918 339 25 0 0 chr3 173188749 173188789 -44848369 + (CA)n Simple_repeat Simple_repeat 2 41 0 207 259 36 101 chr3 173189025 173189164 -44847994 + MIR3 SINE MIR 76 205 -3 445 325 56 43 chr3 173189181 173189415 -44847743 + MIR SINE MIR 20 256 -6 544 272 37 37 chr3 173190329 173190491 -44846667 + MIR SINE MIR 57 218 -44 473 204 0 0 chr3 173190631 173190719 -44846439 + L2 LINE L2 3226 3313 0 328 306 156 38 chr3 173192746 173193119 -44844039 - MLT1K LTR MaLR -71 517 101 371 248 106 21 chr3 173193674 173193815 -44843343 - L1M LINE L1 -756 5408 5256 39 22 0 0 chr3 173193815 173193861 -44843297 + AT_rich Low_complexity Low_complexity 1 46 0 526 274 70 4 chr3 173193896 173194155 -44843003 - L1M4 LINE L1 -913 5233 4958 442 332 29 52 chr3 173194935 173195305 -44841853 + L2 LINE L2 2745 3107 -165 224 59 29 0 chr3 173195471 173195505 -44841653 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 5591 138 20 23 chr3 173196923 173197452 -44839706 + L1PA16 LINE L1 4801 5330 -836 11440 165 82 1 chr3 173197452 173200467 -44836691 + L1PA13 LINE L1 3028 6149 -14 5591 138 20 23 chr3 173200467 173201289 -44835869 + L1PA16 LINE L1 5330 6159 -7 402 286 16 8 chr3 173202393 173202519 -44834639 - MIR SINE MIR -1 261 135 459 350 20 24 chr3 173202825 173203071 -44834087 - MLT1K LTR MaLR -342 246 2 836 331 84 57 chr3 173203330 173204325 -44832833 - L3 LINE CR1 -111 1466 445 405 300 9 69 chr3 173204596 173204946 -44832212 + L1M4 LINE L1 3439 3767 -2379 403 250 129 16 chr3 173204958 173205082 -44832076 - MIR SINE MIR 0 262 125 193 71 0 48 chr3 173205302 173205344 -44831814 + (TA)n Simple_repeat Simple_repeat 1 40 0 438 283 104 60 chr3 173205344 173205542 -44831616 + L1M4 LINE L1 4043 4231 -1915 1992 156 3 7 chr3 173205542 173205850 -44831308 + AluJo SINE Alu 1 307 -5 438 283 104 60 chr3 173205850 173206500 -44830658 + L1M4 LINE L1 4231 4928 -1218 302 243 27 54 chr3 173206588 173206736 -44830422 + L1M4 LINE L1 3950 4093 -2053 2234 122 11 28 chr3 173206742 173207103 -44830055 - THE1A LTR MaLR 0 355 1 243 0 0 0 chr3 173207905 173207932 -44829226 + (CAT)n Simple_repeat Simple_repeat 2 28 0 2328 110 0 0 chr3 173208004 173208304 -44828854 + AluSx SINE Alu 1 300 -12 265 324 97 51 chr3 173208917 173209093 -44828065 - MIR SINE MIR -76 186 3 259 205 39 13 chr3 173209552 173209568 -44827590 + (CATATA)n Simple_repeat Simple_repeat 2 16 -65 636 179 18 0 chr3 173209568 173209680 -44827478 + MER81 DNA DNA 1 114 0 259 205 39 13 chr3 173209680 173209741 -44827417 + (CATATA)n Simple_repeat Simple_repeat 16 81 0 194 62 31 0 chr3 173210069 173210101 -44827057 + (TTG)n Simple_repeat Simple_repeat 2 34 0 1295 97 0 0 chr3 173210105 173210270 -44826888 - AluSc SINE Alu -24 285 121 2005 113 3 3 chr3 173210275 173210558 -44826600 - AluSc SINE Alu -26 283 1 24 0 0 0 chr3 173210562 173210586 -44826572 + AT_rich Low_complexity Low_complexity 1 24 0 654 269 79 13 chr3 173210626 173210997 -44826161 - MLT1J LTR MaLR -58 453 7 315 264 198 8 chr3 173211491 173211612 -44825546 - MIR3 SINE MIR -1 207 64 361 292 25 33 chr3 173212006 173212126 -44825032 - MIR3 SINE MIR -5 203 85 21 0 0 0 chr3 173212313 173212334 -44824824 + AT_rich Low_complexity Low_complexity 1 21 0 2091 121 7 7 chr3 173214074 173214371 -44822787 - AluSx SINE Alu -15 297 1 814 302 83 4 chr3 173214466 173214708 -44822450 - MIR SINE MIR 0 262 2 185 359 33 43 chr3 173214743 173214835 -44822323 + MIR SINE MIR 50 140 -122 306 300 22 0 chr3 173215201 173215291 -44821867 - L1MC4 LINE L1 -1337 6705 6614 205 237 0 0 chr3 173215291 173215329 -44821829 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr3 173215690 173215713 -44821445 + AT_rich Low_complexity Low_complexity 1 23 0 2398 57 0 0 chr3 173215865 173216148 -44821010 + AluY SINE Alu 17 299 -12 315 0 0 0 chr3 173217826 173217861 -44819297 + (TG)n Simple_repeat Simple_repeat 1 35 0 308 316 149 44 chr3 173217907 173218290 -44818868 + L1M2 LINE L1 653 1075 -5774 2382 88 0 0 chr3 173219610 173219904 -44817254 - AluSq SINE Alu -19 294 1 479 262 141 70 chr3 173220144 173220541 -44816617 + L1ME3A LINE L1 188 612 -5593 582 242 25 105 chr3 173220578 173220941 -44816217 + L1ME3A LINE L1 796 1129 -5076 308 299 46 46 chr3 173221094 173221268 -44815890 + L1ME3A LINE L1 2125 2298 -4098 1753 169 14 4 chr3 173221299 173221577 -44815581 + AluJb SINE Alu 14 294 -18 360 273 118 56 chr3 173221604 173221926 -44815232 + L1ME3A LINE L1 2279 2620 -3595 1300 283 103 46 chr3 173222048 173223568 -44813590 + L1ME3A LINE L1 3593 5199 -1016 320 276 65 16 chr3 173223628 173223751 -44813407 + L1ME3A LINE L1 5331 5459 -756 2161 115 0 7 chr3 173223751 173224038 -44813120 + AluSg SINE Alu 1 285 -25 192 70 70 0 chr3 173224042 173224085 -44813073 + (TA)n Simple_repeat Simple_repeat 1 46 0 372 210 84 14 chr3 173224095 173224237 -44812921 + L1ME3A LINE L1 5483 5632 -558 2216 182 36 38 chr3 173224238 173224548 -44812610 + MLT1D LTR MaLR 2 312 -193 1846 149 61 28 chr3 173224548 173224911 -44812247 - THE1C LTR MaLR 0 375 1 2216 182 36 38 chr3 173224911 173225105 -44812053 + MLT1D LTR MaLR 312 505 0 419 236 229 7 chr3 173225188 173225328 -44811830 + MER5A DNA MER1_type 18 188 -1 430 324 51 33 chr3 173225352 173225628 -44811530 + L1ME3A LINE L1 5753 6031 -208 1814 198 93 24 chr3 173227725 173228144 -44809014 - MLT2B2 LTR ERVL -67 448 1 1862 171 3 0 chr3 173228144 173228442 -44808716 + AluJb SINE Alu 1 299 -13 2282 95 0 16 chr3 173228481 173228615 -44808543 + AluSg SINE Alu 1 136 -174 2166 133 7 0 chr3 173228615 173228923 -44808235 + AluSg SINE Alu 1 310 0 2282 95 0 16 chr3 173228923 173229092 -44808066 + AluSg SINE Alu 136 299 -11 2388 101 8 17 chr3 173229716 173230074 -44807084 - THE1A LTR MaLR 0 355 1 9816 90 87 0 chr3 173230074 173231527 -44805631 - THE1A-int LTR MaLR 0 1580 1 2393 107 8 8 chr3 173231527 173231882 -44805276 - THE1A LTR MaLR 0 355 1 372 253 14 72 chr3 173232428 173232567 -44804591 - MER5A DNA MER1_type -55 126 4 267 347 61 34 chr3 173232645 173232792 -44804366 + L2 LINE L2 3122 3272 0 199 302 47 65 chr3 173232857 173233089 -44804069 - L2 LINE L2 -1314 2000 1773 262 298 48 0 chr3 173233429 173233513 -44803645 - MIR SINE MIR -7 255 168 6274 97 17 2 chr3 173235689 173237552 -44799606 - L1PA10 LINE L1 -16 6152 4275 497 254 200 19 chr3 173237829 173238294 -44798864 + MER115 DNA AcHobo 135 4028 -3 209 362 34 20 chr3 173238485 173238634 -44798524 - L2 LINE L2 -556 2758 2608 698 135 5 38 chr3 173239074 173239259 -44797899 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 488 342 31 85 chr3 173239875 173240264 -44796894 - L2 LINE L2 -1 3271 2904 354 267 40 0 chr3 173240424 173240525 -44796633 - L2 LINE L2 -613 2701 2597 390 263 179 27 chr3 173240536 173240798 -44796360 + L2 LINE L2 3012 3313 0 214 273 0 0 chr3 173241880 173241924 -44795234 + polypyrimidine Low_complexity Low_complexity 5 48 0 23 0 0 0 chr3 173242859 173242882 -44794276 + AT_rich Low_complexity Low_complexity 1 23 0 2349 121 103 5 chr3 173243849 173244239 -44792919 - MSTA LTR MaLR 0 428 1 184 296 19 19 chr3 173244470 173244524 -44792634 - MER5B DNA MER1_type -19 159 106 * 284 269 60 54 chr3 173244476 173244625 -44792533 + MER5A DNA MER1_type 37 186 -3 915 234 110 57 chr3 173244764 173245182 -44791976 - MLT1J LTR MaLR 0 511 72 211 284 98 10 chr3 173245237 173245339 -44791819 + MIR3 SINE MIR 93 203 -5 226 388 84 20 chr3 173247199 173247449 -44789709 + L2 LINE L2 2814 3079 -193 953 221 106 17 chr3 173248104 173248339 -44788819 + MIR SINE MIR 7 262 0 290 314 96 53 chr3 173250197 173250614 -44786544 - L2 LINE L2 -31 3241 2807 334 282 75 43 chr3 173251324 173251512 -44785646 + LTR16C LTR ERVL 72 265 -226 349 237 85 34 chr3 173251545 173251663 -44785495 + LTR16C LTR ERVL 368 491 0 244 200 83 50 chr3 173252100 173252160 -44784998 + MER5A DNA MER1_type 3 64 -125 193 243 0 0 chr3 173252472 173252509 -44784649 - L2 LINE L2 -16 3297 3261 352 143 54 0 chr3 173252590 173252646 -44784512 + FRAM SINE Alu 60 118 -48 245 229 72 12 chr3 173257040 173257123 -44780035 - MIR SINE MIR 0 262 175 440 150 0 0 chr3 173257125 173257205 -44779953 + MLT2B3 LTR ERVL 1 80 -474 10794 142 16 20 chr3 173257208 173257468 -44779690 + HERVL LTR ERVL 3026 3286 -2368 2305 108 0 0 chr3 173257468 173257764 -44779394 - AluSc SINE Alu -13 296 1 10794 142 16 20 chr3 173257764 173258386 -44778772 + HERVL LTR ERVL 3286 3909 -1745 6403 82 8 15 chr3 173258386 173260195 -44776963 + L1PA10 LINE L1 4342 6168 0 1644 58 0 0 chr3 173260202 173260409 -44776749 + L1PA14 LINE L1 5955 6161 0 10794 142 16 20 chr3 173260409 173261376 -44775782 + HERVL LTR ERVL 3915 4876 -778 1296 148 106 4 chr3 173261378 173261642 -44775516 + MSTA LTR MaLR 138 428 0 472 274 85 0 chr3 173261648 173261801 -44775357 - MIR SINE MIR -91 171 6 21 0 0 0 chr3 173262451 173262472 -44774686 + AT_rich Low_complexity Low_complexity 1 21 0 712 298 74 35 chr3 173262758 173263161 -44773997 - MLT1L LTR MaLR 0 615 197 208 250 54 0 chr3 173263294 173263350 -44773808 - MIR SINE MIR -109 153 95 1563 108 31 0 chr3 173263377 173263600 -44773558 - MER30 DNA MER1_type 0 230 1 1333 107 103 37 chr3 173263611 173263853 -44773305 + THE1B LTR MaLR 1 258 -106 4013 104 46 12 chr3 173263868 173264548 -44772610 - L1PA15-16 LINE L1 -3986 2863 2161 1489 131 57 39 chr3 173264543 173264825 -44772333 - L1PA15-16 LINE L1 -6347 502 216 * 2007 218 10 45 chr3 173264826 173265317 -44771841 - MER52A LTR ERV1 0 1755 1282 1233 133 0 5 chr3 173265381 173265576 -44771582 - L1PA15-16 LINE L1 -6646 203 10 216 0 0 0 chr3 173265576 173265600 -44771558 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 729 88 0 0 chr3 173266421 173266523 -44770635 + (TCTA)n Simple_repeat Simple_repeat 3 104 0 2518 201 45 40 chr3 173266532 173267158 -44770000 - MER82 DNA MER2_type -22 631 3 1270 143 5 0 chr3 173267170 173267373 -44769785 + MER2 DNA MER2_type 3 206 -139 457 188 62 71 chr3 173267597 173267709 -44769449 + MER81 DNA DNA 2 112 -2 21 0 0 0 chr3 173268094 173268115 -44769043 + AT_rich Low_complexity Low_complexity 1 21 0 572 190 43 82 chr3 173268230 173268414 -44768744 + MER5B DNA MER1_type 1 177 -1 431 293 147 65 chr3 173268570 173268802 -44768356 + MIR SINE MIR 12 262 0 251 175 0 0 chr3 173268974 173269014 -44768144 + MER58 DNA MER1_type 1 40 -184 289 257 0 14 chr3 173269059 173269133 -44768025 + MER58 DNA MER1_type 2348 2420 0 1157 180 59 39 chr3 173269154 173269409 -44767749 + Charlie1a DNA MER1_type 14 273 -1182 811 172 100 11 chr3 173269410 173269590 -44767568 - MER20 DNA MER1_type 0 219 24 4057 170 114 40 chr3 173269648 173270743 -44766415 + Charlie1a DNA MER1_type 280 1455 0 27 29 0 0 chr3 173270764 173270798 -44766360 + AT_rich Low_complexity Low_complexity 1 34 0 307 197 53 0 chr3 173270956 173271032 -44766126 + MIR SINE MIR 82 161 -101 262 265 69 20 chr3 173271166 173271268 -44765890 + MIR SINE MIR 136 242 -20 367 298 175 26 chr3 173272031 173272259 -44764899 + L2 LINE L2 3021 3282 -31 1742 141 35 25 chr3 173273145 173273429 -44763729 + AluJb SINE Alu 1 287 -25 285 202 143 12 chr3 173273618 173273786 -44763372 - Charlie7 DNA MER1_type -36 2576 2387 * 839 276 85 28 chr3 173273780 173274132 -44763026 - Charlie7 DNA MER1_type -1970 642 271 1797 135 3 58 chr3 173274521 173274848 -44762310 - AluSx SINE Alu -1 311 3 189 282 12 82 chr3 173275650 173275735 -44761423 - L2 LINE L2 -212 3060 2982 219 408 30 9 chr3 173275763 173275996 -44761162 - L2 LINE L2 -407 2907 2670 532 262 6 52 chr3 173276302 173276474 -44760684 - MIR SINE MIR -50 212 49 2231 120 24 24 chr3 173277147 173277522 -44759636 - THE1C LTR MaLR 0 375 1 22 56 0 0 chr3 173277643 173277679 -44759479 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr3 173278429 173278451 -44758707 + AT_rich Low_complexity Low_complexity 1 22 0 195 309 29 0 chr3 173279792 173279860 -44757298 - MIR SINE MIR -21 241 172 426 238 215 33 chr3 173281772 173281986 -44755172 + MIR SINE MIR 3 255 -7 746 217 140 37 chr3 173282038 173282310 -44754848 + MER5C DNA MER1_type 21 320 -4 197 286 48 32 chr3 173283103 173283166 -44753992 + L2 LINE L2 3250 3313 0 958 226 14 14 chr3 173283630 173283847 -44753311 - MER20 DNA MER1_type -1 218 2 468 0 0 0 chr3 173283849 173283901 -44753257 + (TA)n Simple_repeat Simple_repeat 1 52 0 2091 103 3 51 chr3 173487607 173487918 -44549240 + AluY SINE Alu 1 296 -15 929 278 117 14 chr3 173488927 173489519 -44547639 - L1ME4a LINE L1 -193 5928 5257 219 271 12 12 chr3 173489731 173489816 -44547342 + (TA)n Simple_repeat Simple_repeat 2 86 0 230 288 176 41 chr3 173490266 173490731 -44546427 - L2 LINE L2 -338 2976 2449 401 276 111 46 chr3 173490923 173491140 -44546018 + MIR SINE MIR 29 259 -3 3297 205 37 32 chr3 173491862 173492781 -44544377 + L1MC4 LINE L1 6988 7911 -131 279 0 0 0 chr3 173492803 173492834 -44544324 + (CA)n Simple_repeat Simple_repeat 2 32 0 374 304 96 10 chr3 173493566 173493790 -44543368 + MIR SINE MIR 9 252 -10 180 29 176 0 chr3 173493828 173493862 -44543296 - L2 LINE L2 -69 3244 3205 683 215 127 0 chr3 173495239 173495397 -44541761 + MER45A DNA AcHobo 1 178 0 220 255 21 0 chr3 173495800 173495847 -44541311 + L3 LINE CR1 1526 1573 -4 458 289 87 0 chr3 173495925 173496074 -44541084 - MIR SINE MIR 0 262 101 290 217 57 38 chr3 173496199 173496305 -44540853 + 7SK RNA RNA 2 109 -84 185 225 0 0 chr3 173497141 173497181 -44539977 + MIR SINE MIR 120 159 -103 2282 79 0 22 chr3 173497565 173497880 -44539278 + AluY SINE Alu 1 308 -3 278 309 73 28 chr3 173497905 173498261 -44538897 + L1ME4a LINE L1 4772 5143 -1003 622 281 103 72 chr3 173498563 173499035 -44538123 + L1ME4a LINE L1 5571 6063 -58 2698 216 46 43 chr3 173499055 173499110 -44538048 + L1MA9 LINE L1 5467 5520 -792 5079 98 4 0 chr3 173499110 173499795 -44537363 + LTR12 LTR ERV1 1 688 0 2698 216 46 43 chr3 173499795 173500504 -44536654 + L1MA9 LINE L1 5520 6233 -79 33 0 0 0 chr3 173500531 173500564 -44536594 + AT_rich Low_complexity Low_complexity 1 33 0 1767 155 16 0 chr3 173500591 173500901 -44536257 + L1P LINE L1 4007 4321 -1825 1089 192 130 37 chr3 173500925 173501260 -44535898 + MER51A LTR ERV1 261 616 -18 5731 122 12 8 chr3 173501272 173503117 -44534041 + L1PA13 LINE L1 4320 6162 -1 316 276 68 6 chr3 173503278 173503441 -44533717 + L1ME4a LINE L1 5949 6121 0 260 257 14 0 chr3 173504496 173504566 -44532592 - MER102b DNA MER1_type -3 1327 1257 406 304 140 4 chr3 173504711 173504961 -44532197 - MER102b DNA MER1_type -49 292 9 378 0 0 0 chr3 173506583 173506625 -44530533 + (TG)n Simple_repeat Simple_repeat 1 42 0 183 80 0 0 chr3 173507968 173507993 -44529165 + (TA)n Simple_repeat Simple_repeat 2 26 0 638 290 50 18 chr3 173508694 173508977 -44528181 + MER102b DNA MER1_type 37 328 -13 242 266 63 25 chr3 173509010 173509089 -44528069 + L2 LINE L2 3231 3312 -1 259 318 139 23 chr3 173509134 173509263 -44527895 + L2 LINE L2 3122 3265 -7 943 280 13 4 chr3 173509832 173510068 -44527090 + MIR SINE MIR 25 262 0 1024 219 58 42 chr3 173510345 173510656 -44526502 + MER46C DNA MER2_type 1 316 -22 740 338 90 17 chr3 173510763 173510960 -44526198 - L2 LINE L2 0 3313 3132 372 71 0 0 chr3 173510960 173511016 -44526142 + (TG)n Simple_repeat Simple_repeat 2 57 0 740 338 90 17 chr3 173511016 173511385 -44525773 - L2 LINE L2 -181 3132 2690 1194 279 23 43 chr3 173511477 173511947 -44525211 - MLT1J LTR MaLR -24 487 27 236 275 0 57 chr3 173512050 173512138 -44525020 - MIR SINE MIR -56 152 78 1383 148 35 0 chr3 173513409 173513665 -44523493 - L1MA6 LINE L1 0 6300 6036 265 179 26 39 chr3 173514612 173514690 -44522468 - MLT1I LTR MaLR -17 392 316 465 234 40 24 chr3 173514898 173515022 -44522136 + L2 LINE L2 3188 3313 0 199 296 159 0 chr3 173515546 173515634 -44521524 + L2 LINE L2 3212 3313 0 402 325 156 39 chr3 173516024 173516891 -44520267 + L2 LINE L2 2292 3261 -11 279 211 0 0 chr3 173517985 173518080 -44519078 + (TG)n Simple_repeat Simple_repeat 1 95 0 820 226 112 127 chr3 173518668 173519239 -44517919 + MLT1G1 LTR MaLR 16 549 -6 497 276 14 28 chr3 173520300 173520445 -44516713 - MIR SINE MIR -56 206 64 433 209 29 0 chr3 173520760 173520865 -44516293 - MER103 DNA DNA -10 156 49 248 200 13 0 chr3 173521071 173521146 -44516012 + CT-rich Low_complexity Low_complexity 3 78 0 703 304 130 36 chr3 173521172 173521665 -44515493 + L3 LINE CR1 402 940 -637 2110 132 10 10 chr3 173522308 173522612 -44514546 - AluSx SINE Alu -8 304 1 2641 128 31 5 chr3 173522656 173523071 -44514087 - MSTB LTR MaLR 0 426 1 300 171 14 29 chr3 173523080 173523150 -44514008 + MLT1H LTR MaLR 99 167 -382 202 188 25 62 chr3 173523783 173523863 -44513295 + A-rich Low_complexity Low_complexity 4 80 0 40414 37 23 2 chr3 173524078 173530102 -44507056 - L1PA3 LINE L1 0 6155 5 352 300 23 23 chr3 173530109 173530239 -44506919 + HAL1b LINE L1 221 350 -998 246 300 107 36 chr3 173530719 173530859 -44506299 + L2 LINE L2 3162 3311 -2 2625 23 0 0 chr3 173531345 173531651 -44505507 - L1PA2 LINE L1 0 6155 5850 234 247 55 14 chr3 173531662 173531735 -44505423 + LTR33A LTR ERVL 448 523 0 1299 244 49 34 chr3 173533012 173533398 -44503760 - MLT1I LTR MaLR 0 409 18 21 0 0 0 chr3 173534004 173534025 -44503133 + AT_rich Low_complexity Low_complexity 1 21 0 436 297 103 7 chr3 173534910 173535065 -44502093 - MIR SINE MIR -27 235 66 320 355 56 54 chr3 173535896 173536367 -44500791 + L2 LINE L2 2797 3267 -5 2025 110 53 0 chr3 173536670 173536952 -44500206 + AluSg SINE Alu 1 297 -13 180 0 0 0 chr3 173537258 173537278 -44499880 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 569 298 66 5 chr3 173538244 173538442 -44498716 + MIR SINE MIR 21 230 -32 347 298 19 0 chr3 173538759 173538863 -44498295 - MIR3 SINE MIR -30 178 73 1133 290 68 48 chr3 173538874 173539416 -44497742 - LTR67 LTR ERVL -3 554 2 190 235 132 59 chr3 173539880 173539948 -44497210 + L3 LINE CR1 265 337 -1240 181 259 147 17 chr3 173540256 173540372 -44496786 - MIR SINE MIR -1 261 131 184 351 78 7 chr3 173540525 173540679 -44496479 - L2 LINE L2 -182 3090 2926 44912 39 2 5 chr3 173541422 173547588 -44489570 - L1PA4 LINE L1 -3 6152 7 2011 105 54 0 chr3 173547724 173548000 -44489158 - AluY SINE Alu -20 291 1 3182 250 158 15 chr3 173550353 173551759 -44485399 - L2 LINE L2 0 3313 1705 252 269 74 74 chr3 173553468 173553617 -44483541 + MIR SINE MIR 23 171 -91 22 70 0 0 chr3 173555059 173555102 -44482056 + AT_rich Low_complexity Low_complexity 1 43 0 708 228 0 0 chr3 173555821 173555935 -44481223 - MER81 DNA DNA 0 114 1 2103 106 0 24 chr3 173556927 173557242 -44479916 - AluSq SINE Alu 0 308 1 1199 93 0 0 chr3 173559953 173560103 -44477055 + AluSq/x SINE Alu 1 150 -163 309 51 0 0 chr3 173562003 173562042 -44475116 + (CA)n Simple_repeat Simple_repeat 2 40 0 200 261 0 0 chr3 173562702 173562748 -44474410 + MER5B DNA MER1_type 5 50 -128 926 178 30 56 chr3 173562752 173563022 -44474136 - L1MC5 LINE L1 -32 7929 7667 482 184 53 35 chr3 173563023 173563137 -44474021 + MER5B DNA MER1_type 40 155 -23 336 102 0 0 chr3 173563970 173564019 -44473139 + (CCTAT)n Simple_repeat Simple_repeat 4 52 0 207 0 0 0 chr3 173564293 173564316 -44472842 + (ATTG)n Simple_repeat Simple_repeat 2 24 0 24 0 0 0 chr3 173566237 173566261 -44470897 + GC_rich Low_complexity Low_complexity 1 24 0 252 275 55 22 chr3 173566446 173566537 -44470621 - MIR3 SINE MIR -6 202 109 499 271 35 9 chr3 173566639 173566791 -44470367 - MIR SINE MIR -62 146 3 224 273 30 30 chr3 173566824 173566890 -44470268 - MIR SINE MIR -163 99 34 702 261 15 35 chr3 173567701 173567904 -44469254 + MIR SINE MIR 49 247 -15 1561 237 62 120 chr3 173568040 173568706 -44468452 + MER45C DNA AcHobo 7 633 -320 293 204 19 0 chr3 173568701 173568755 -44468403 + MER45C DNA AcHobo 899 953 0 * 333 47 0 0 chr3 173569558 173569601 -44467557 + (CA)n Simple_repeat Simple_repeat 2 44 0 204 270 0 48 chr3 173570000 173570063 -44467095 + CT-rich Low_complexity Low_complexity 3 62 0 733 259 35 25 chr3 173571565 173571766 -44465392 - MIR SINE MIR -8 254 52 2124 117 3 0 chr3 173571956 173572290 -44464868 + AluSx SINE Alu 2 312 0 864 280 108 28 chr3 173572392 173573026 -44464132 - L1MC4a LINE L1 -377 5793 5304 376 250 42 69 chr3 173573204 173573348 -44463810 + LTR67 LTR ERVL 407 546 -11 1304 241 138 39 chr3 173574288 173574795 -44462363 - L1ME LINE L1 -351 5819 5263 2305 77 0 7 chr3 173575005 173575302 -44461856 - AluY SINE Alu -16 295 1 685 298 68 34 chr3 173575685 173576216 -44460942 - L1ME LINE L1 -1310 4836 4288 2365 59 3 3 chr3 173576354 173576644 -44460514 + AluY SINE Alu 1 290 -21 228 358 52 60 chr3 173576986 173577120 -44460038 - L2 LINE L2 -30 3242 3110 2070 126 167 21 chr3 173577153 173577525 -44459633 + MSTA LTR MaLR 1 426 -2 281 239 196 0 chr3 173577657 173577749 -44459409 - MIR3 SINE MIR -8 200 91 1908 100 0 78 chr3 173577995 173578326 -44458832 - AluSq SINE Alu 0 307 1 1271 113 6 0 chr3 173578363 173578540 -44458618 - AluSq SINE Alu -97 216 39 1209 187 72 28 chr3 173578542 173578793 -44458365 - AluJo SINE Alu -15 297 36 558 284 58 19 chr3 173578949 173579157 -44458001 + MIR SINE MIR 17 232 -30 2169 104 11 0 chr3 173580570 173580887 -44456271 + AluSq SINE Alu 2 321 0 998 129 7 0 chr3 173584243 173584398 -44452760 + L1MA4 LINE L1 6137 6292 -8 859 246 57 20 chr3 173585625 173585873 -44451285 + MIR SINE MIR 4 260 -2 788 303 132 48 chr3 173586374 173586490 -44450668 - L2 LINE L2 -5 3267 3162 2291 102 3 0 chr3 173586490 173586783 -44450375 - AluSg SINE Alu -16 294 1 788 303 132 48 chr3 173586783 173587135 -44450023 - L2 LINE L2 -110 3162 2841 3036 33 0 0 chr3 173587135 173587471 -44449687 - L1PA3 LINE L1 0 6155 5820 2112 93 6 42 chr3 173587472 173587651 -44449507 - AluSc SINE Alu -7 302 137 2490 55 0 23 chr3 173587651 173587961 -44449197 - AluY SINE Alu -8 303 1 1031 104 7 7 chr3 173587961 173588094 -44449064 - AluSc SINE Alu -176 133 1 2112 93 6 42 chr3 173587961 173588094 -44449064 - AluSc SINE Alu -172 137 1 788 303 132 48 chr3 173588094 173588502 -44448656 - L2 LINE L2 -430 2842 2309 482 333 77 68 chr3 173591114 173591465 -44445693 - L2 LINE L2 -15 3257 2911 2054 163 43 43 chr3 173591465 173591931 -44445227 - MER31B LTR ERV1 0 466 1 482 333 77 68 chr3 173591931 173592411 -44444747 - L2 LINE L2 -361 2911 2375 31 58 0 0 chr3 173592819 173592871 -44444287 + AT_rich Low_complexity Low_complexity 1 52 0 504 276 86 49 chr3 173594437 173594763 -44442395 + MER46C DNA MER2_type 1 338 0 267 341 102 26 chr3 173596645 173596871 -44440287 + L2 LINE L2 2805 3047 -225 253 228 101 51 chr3 173596879 173596958 -44440200 - L2 LINE L2 0 3272 3190 1948 139 172 5 chr3 173596964 173597331 -44439827 + MSTA LTR MaLR 1 428 0 9194 169 41 2 chr3 173597331 173598913 -44438245 + MSTA-int LTR MaLR 1 1644 -7 1005 120 42 12 chr3 173599100 173599267 -44437891 + MSTA-int LTR MaLR 1480 1651 0 533 50 125 12 chr3 173599267 173599347 -44437811 + MSTA LTR MaLR 1 89 -339 745 183 8 0 chr3 173599685 173599811 -44437347 - FLAM_C SINE Alu -6 127 1 244 287 96 11 chr3 173599868 173599962 -44437196 - MER91C DNA MER1_type -30 110 9 218 373 24 24 chr3 173600174 173600300 -44436858 - L2 LINE L2 -181 3091 2966 380 321 38 8 chr3 173601127 173601258 -44435900 + MER91C DNA MER1_type 1 135 -5 1815 138 56 0 chr3 173601763 173602100 -44435058 - AluSx SINE Alu 0 352 1 357 188 58 0 chr3 173604208 173604277 -44432881 - MIR3 SINE MIR -15 193 121 1082 323 77 13 chr3 173604298 173604869 -44432289 - L2 LINE L2 0 3313 2709 230 325 16 40 chr3 173605488 173605614 -44431544 - L2 LINE L2 -827 2487 2365 272 272 136 68 chr3 173606003 173606150 -44431008 + L2 LINE L2 3130 3286 -27 318 363 53 45 chr3 173607088 173607333 -44429825 + L2 LINE L2 2940 3186 -86 22 0 0 0 chr3 173607943 173607965 -44429193 + AT_rich Low_complexity Low_complexity 1 22 0 350 316 41 39 chr3 173608669 173608822 -44428336 + MIR SINE MIR 23 174 -58 446 234 172 45 chr3 173611319 173611563 -44425595 + LTR67 LTR ERVL 283 557 0 709 189 11 50 chr3 173611961 173612141 -44425017 + MER5B DNA MER1_type 5 177 -1 213 196 0 0 chr3 173612889 173612935 -44424223 + (TA)n Simple_repeat Simple_repeat 2 47 0 745 160 10 82 chr3 173613780 173613974 -44423184 + MER104 DNA MER2_type 1 180 0 25 65 0 0 chr3 173614036 173614082 -44423076 + AT_rich Low_complexity Low_complexity 1 46 0 25 0 0 0 chr3 173614094 173614119 -44423039 + AT_rich Low_complexity Low_complexity 1 25 0 785 188 0 0 chr3 173614839 173614972 -44422186 - FLAM_A SINE Alu 0 133 1 37 23 0 0 chr3 173615131 173615175 -44421983 + AT_rich Low_complexity Low_complexity 1 44 0 2320 57 4 0 chr3 173616535 173616858 -44420300 - AluY SINE Alu 0 324 1 189 0 0 0 chr3 173617203 173617224 -44419934 + (T)n Simple_repeat Simple_repeat 1 21 0 261 0 0 0 chr3 173618666 173618695 -44418463 + (CA)n Simple_repeat Simple_repeat 2 30 0 803 194 62 12 chr3 173619229 173619389 -44417769 - MER5A DNA MER1_type -5 184 17 1026 253 59 46 chr3 173620012 173620555 -44416603 + Charlie7 DNA MER1_type 99 684 -1928 302 208 0 94 chr3 173620574 173620680 -44416478 + Charlie7 DNA MER1_type 2516 2611 -1 351 277 95 61 chr3 173620797 173620945 -44416213 + MIR SINE MIR 97 249 -13 375 242 10 20 chr3 173622925 173623024 -44414134 - L1MB8 LINE L1 -68 6110 6013 * 29941 105 9 12 chr3 173623013 173628716 -44408442 + L1PA7 LINE L1 764 6469 0 2070 176 83 20 chr3 173628740 173629188 -44407970 - L1MB8 LINE L1 -140 6038 5563 1862 142 3 24 chr3 173629809 173630104 -44407054 + AluSx SINE Alu 1 289 -23 215 291 58 39 chr3 173630341 173630444 -44406714 - L2 LINE L2 -10 3303 3199 264 200 0 0 chr3 173633596 173633656 -44403502 + (TA)n Simple_repeat Simple_repeat 2 61 0 210 217 0 0 chr3 173634096 173634142 -44403016 + L2 LINE L2 2925 2970 -344 1349 211 166 47 chr3 173634262 173634713 -44402445 + MLT1D LTR MaLR 1 505 0 505 292 88 39 chr3 173734874 173735385 -44301773 - L1 LINE L1 -1496 4719 4184 4216 192 76 33 chr3 173735402 173736620 -44300538 - L1MD1 LINE L1 -16 6226 4943 1597 147 22 45 chr3 173736620 173736640 -44300518 - AluJb SINE Alu 0 312 293 390 57 0 0 chr3 173736640 173736693 -44300465 + (TG)n Simple_repeat Simple_repeat 2 54 0 1597 147 22 45 chr3 173736693 173736985 -44300173 - AluJb SINE Alu -19 293 7 2308 87 0 3 chr3 173737028 173737328 -44299830 - AluSg SINE Alu -11 299 1 208 305 34 0 chr3 173737330 173737389 -44299769 + MER5A DNA MER1_type 129 189 0 21 36 0 0 chr3 173737996 173738024 -44299134 + AT_rich Low_complexity Low_complexity 1 28 0 742 280 63 71 chr3 173738078 173738489 -44298669 - L2 LINE L2 -1 3312 2905 33 85 0 0 chr3 173739442 173739524 -44297634 + AT_rich Low_complexity Low_complexity 1 82 0 1579 188 28 0 chr3 173739861 173740148 -44297010 + AluJo SINE Alu 1 295 -17 186 325 169 0 chr3 173743257 173743334 -44293824 + MIR SINE MIR 2 91 -171 901 283 71 65 chr3 173744274 173744879 -44292279 - L1MEc LINE L1 -5709 687 79 1896 254 132 20 chr3 173744977 173746064 -44291094 - L1MEc LINE L1 -2907 3308 2144 332 249 106 85 chr3 173746205 173746498 -44290660 - HAL1b LINE L1 -802 546 248 185 29 0 86 chr3 173746729 173746764 -44290394 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 813 162 0 39 chr3 173747137 173747291 -44289867 - FRAM SINE Alu -9 167 20 267 256 0 49 chr3 173747420 173747502 -44289656 - HAL1 LINE L1 -2417 90 13 284 230 108 0 chr3 173749352 173749426 -44287732 - MIR SINE MIR -96 166 85 1375 199 21 41 chr3 173750173 173750278 -44286880 + AluJo SINE Alu 13 119 -193 261 0 0 0 chr3 173750278 173750307 -44286851 + (CA)n Simple_repeat Simple_repeat 2 30 0 1375 199 21 41 chr3 173750307 173750492 -44286666 + AluJo SINE Alu 119 297 -15 253 192 0 26 chr3 173750492 173750570 -44286588 + GA-rich Low_complexity Low_complexity 1 76 0 11150 33 1 1 chr3 173750702 173752818 -44284340 - L1PA4 LINE L1 0 6155 4038 14012 45 7 0 chr3 173752918 173754705 -44282453 - L1PA4 LINE L1 -2368 3778 1979 1189 77 0 0 chr3 173754700 173754856 -44282302 - L1PA4 LINE L1 -5990 156 1 * 2162 127 28 25 chr3 173755007 173755370 -44281788 + THE1B LTR MaLR 1 364 0 1709 214 64 18 chr3 173755440 173755939 -44281219 - L1ME LINE L1 -2860 3220 2699 3204 265 62 38 chr3 173755949 173756093 -44281065 - L1ME LINE L1 -3873 2388 2249 2284 79 0 3 chr3 173756093 173756384 -44280774 - AluY SINE Alu -21 290 1 3204 265 62 38 chr3 173756384 173758066 -44279092 - L1ME LINE L1 -4012 2249 501 2151 122 0 0 chr3 173758066 173758360 -44278798 - AluSx SINE Alu -17 295 2 1182 115 15 50 chr3 173758362 173758562 -44278596 - Tigger2a DNA MER2_type -239 195 3 405 0 0 0 chr3 173758611 173758656 -44278502 + (TA)n Simple_repeat Simple_repeat 2 46 0 208 225 0 0 chr3 173759259 173759299 -44277859 + GA-rich Low_complexity Low_complexity 6 45 0 24 0 0 0 chr3 173759528 173759552 -44277606 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr3 173760926 173760956 -44276202 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr3 173761434 173761468 -44275690 + AT_rich Low_complexity Low_complexity 1 34 0 243 286 63 0 chr3 173761506 173761569 -44275589 - L2 LINE L2 -5 3267 3201 296 130 130 0 chr3 173761707 173761761 -44275397 - MLT1L LTR MaLR 0 615 555 741 213 119 50 chr3 173761767 173761801 -44275357 - MER58A DNA MER1_type -2196 224 194 1501 84 70 0 chr3 173761801 173762015 -44275143 + MER30 DNA MER1_type 2 230 0 741 213 119 50 chr3 173762015 173762182 -44274976 - MER58A DNA MER1_type -2226 194 9 2340 92 0 0 chr3 173762706 173762999 -44274159 + AluSx SINE Alu 1 293 -19 506 260 193 10 chr3 173763033 173763225 -44273933 - MIR SINE MIR -33 229 3 480 99 0 0 chr3 173763712 173763783 -44273375 + (TAGA)n Simple_repeat Simple_repeat 1 71 0 21 36 0 0 chr3 173764241 173764269 -44272889 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 173764331 173764352 -44272806 + AT_rich Low_complexity Low_complexity 1 21 0 422 62 31 0 chr3 173764379 173764444 -44272714 - MER41B LTR ERV1 -87 548 482 1593 200 0 24 chr3 173764470 173764765 -44272393 - AluJo SINE Alu -24 288 1 1540 194 111 14 chr3 173765231 173765592 -44271566 + MSTD LTR MaLR 1 396 0 1188 220 51 9 chr3 173767379 173767711 -44269447 - LTR37A LTR ERV1 -3 423 78 328 380 34 11 chr3 173767969 173768148 -44269010 + L2 LINE L2 2896 3078 -194 185 274 274 0 chr3 173768215 173768288 -44268870 + L2 LINE L2 3219 3311 -2 1100 178 171 11 chr3 173770036 173770300 -44266858 - MER2 DNA MER2_type -1 344 39 2563 234 130 19 chr3 173770301 173771380 -44265778 - L1MDa LINE L1 -2715 3825 2628 516 132 9 66 chr3 173771392 173771498 -44265660 - FLAM_C SINE Alu -7 136 37 941 249 35 20 chr3 173771523 173771865 -44265293 - L1MDa LINE L1 -3942 2598 2252 319 85 21 0 chr3 173772209 173772256 -44264902 + MADE1 DNA Mariner 1 48 -32 21 82 0 0 chr3 173772462 173772511 -44264647 + AT_rich Low_complexity Low_complexity 1 49 0 263 310 142 9 chr3 173773093 173773206 -44263952 + L2 LINE L2 2250 2377 -937 426 285 89 13 chr3 173773363 173773521 -44263637 + MIR3 SINE MIR 8 177 -31 1416 339 66 27 chr3 173773757 173774734 -44262424 - L2 LINE L2 -40 3273 2261 379 335 45 87 chr3 173774955 173775265 -44261893 - L2 LINE L2 -37 3235 2939 190 161 0 65 chr3 173775369 173775431 -44261727 + CT-rich Low_complexity Low_complexity 2 59 0 22 0 0 0 chr3 173775672 173775694 -44261464 + AT_rich Low_complexity Low_complexity 1 22 0 626 248 61 30 chr3 173776058 173776256 -44260902 + MIR SINE MIR 4 207 -55 238 304 104 0 chr3 173776404 173776519 -44260639 + MIR3 SINE MIR 67 193 -15 201 74 0 0 chr3 173776739 173776766 -44260392 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 281 300 80 104 chr3 173778292 173778416 -44258742 + L2 LINE L2 704 830 -2484 1068 145 70 9 chr3 173778416 173778630 -44258528 + L1MA8 LINE L1 6058 6284 -7 281 300 80 104 chr3 173778630 173778832 -44258326 + L2 LINE L2 830 1022 -2292 476 285 139 51 chr3 173778915 173779347 -44257811 + L2 LINE L2 1617 2086 -1228 785 133 32 38 chr3 173779416 173779574 -44257584 - MER58 DNA MER1_type -3 2417 2261 737 302 184 21 chr3 173779620 173780257 -44256901 + L2 LINE L2 2562 3313 0 701 272 138 28 chr3 173781973 173782482 -44254676 - LTR50 LTR ERVL -132 663 65 35 41 0 0 chr3 173783074 173783123 -44254035 + AT_rich Low_complexity Low_complexity 1 49 0 702 168 13 34 chr3 173783139 173783288 -44253870 - MER106B DNA MER1_type -913 146 1 196 244 0 0 chr3 173783303 173783344 -44253814 + MIR SINE MIR 28 68 -140 310 246 16 49 chr3 173783445 173783567 -44253591 + CT-rich Low_complexity Low_complexity 3 120 0 987 220 32 5 chr3 173783814 173784032 -44253126 - MER58A DNA MER1_type 0 224 1 445 264 0 11 chr3 173784847 173785025 -44252133 + (TA)n Simple_repeat Simple_repeat 1 176 0 288 302 0 0 chr3 173785039 173785165 -44251993 + (TA)n Simple_repeat Simple_repeat 1 126 0 180 351 0 0 chr3 173785149 173785297 -44251861 + (TATATG)n Simple_repeat Simple_repeat 5 152 0 * 230 206 0 82 chr3 173785309 173785406 -44251752 + L1MC4 LINE L1 6615 6703 -1339 405 252 0 0 chr3 173785431 173785550 -44251608 + (TATG)n Simple_repeat Simple_repeat 3 121 0 268 315 0 0 chr3 173785568 173785657 -44251501 - L1MC4 LINE L1 -1340 6702 6614 254 308 0 0 chr3 173785581 173785672 -44251486 + L1MC4 LINE L1 6614 6704 -1338 * 2422 210 34 58 chr3 173785840 173786545 -44250613 - L1MC4 LINE L1 0 8042 7355 393 291 232 39 chr3 173787147 173787323 -44249835 - L3b LINE CR1 -88 1495 1354 1773 153 34 3 chr3 173787323 173787618 -44249540 - AluJb SINE Alu -8 304 1 393 291 232 39 chr3 173787618 173787747 -44249411 - L3b LINE CR1 -229 1354 1131 23 54 0 0 chr3 173788401 173788438 -44248720 + AT_rich Low_complexity Low_complexity 1 37 0 476 259 35 8 chr3 173791414 173791583 -44245575 - L1MC5 LINE L1 -1011 6803 6613 415 237 86 59 chr3 173791583 173791735 -44245423 - MER104 DNA Tc2 -3 177 22 351 337 39 39 chr3 173791937 173792019 -44245139 + L1M4 LINE L1 3705 3786 -2360 2055 148 0 3 chr3 173792019 173792329 -44244829 + AluSg SINE Alu 1 309 -1 351 337 39 39 chr3 173792329 173792424 -44244734 + L1M4 LINE L1 3785 3882 -2264 1435 177 129 43 chr3 173792523 173792895 -44244263 - L1ME2 LINE L1 -9 6155 5752 2011 196 40 5 chr3 173792924 173793328 -44243830 - MER65C LTR ERV1 -43 418 1 384 284 9 0 chr3 173793330 173793446 -44243712 - L1ME2 LINE L1 -428 5750 5634 1572 233 47 22 chr3 173793446 173793849 -44243309 - L1ME LINE L1 -430 5732 5320 2384 56 23 0 chr3 173793866 173794168 -44242990 - L1PA6 LINE L1 -1871 4275 3967 1667 62 12 1 chr3 173794159 173795914 -44241244 + L1PA6 LINE L1 4249 6150 -4 * 416 206 95 58 chr3 173795922 173796111 -44241047 - L1ME LINE L1 -845 5301 5106 341 264 56 37 chr3 173796124 173796340 -44240818 - L1ME LINE L1 -1504 4642 4423 382 352 50 14 chr3 173796381 173796801 -44240357 - L1ME LINE L1 -2054 4092 3658 1396 218 67 69 chr3 173796801 173797293 -44239865 + MER44D DNA MER2_type 2 547 -58 1770 139 10 37 chr3 173797349 173797644 -44239514 + AluSx SINE Alu 1 287 -25 37 0 0 0 chr3 173797644 173797681 -44239477 + AT_rich Low_complexity Low_complexity 1 37 0 338 305 42 0 chr3 173798059 173798177 -44238981 - L1ME1 LINE L1 -10 6156 6034 19803 155 45 45 chr3 173798218 173802249 -44234909 - L1PA11 LINE L1 0 7612 2799 2895 29 0 3 chr3 173802249 173802596 -44234562 + L1PA4 LINE L1 5809 6154 -1 19803 155 45 45 chr3 173802596 173804005 -44233153 - L1PA11 LINE L1 -4813 2799 1391 588 155 23 257 chr3 173804001 173804304 -44232854 - L1PA11 LINE L1 -7349 232 1 * 259 161 18 18 chr3 173804394 173804450 -44232708 - L1ME LINE L1 -567 5599 5544 1378 239 65 72 chr3 173804489 173804789 -44232369 - L1ME1 LINE L1 -273 5893 5597 1825 114 0 0 chr3 173804789 173805034 -44232124 - AluSx SINE Alu -17 295 51 1378 239 65 72 chr3 173805034 173805315 -44231843 - L1ME1 LINE L1 -569 5597 5316 1358 215 124 45 chr3 173805324 173805855 -44231303 - L1ME1 LINE L1 -4 6162 5590 13093 168 29 10 chr3 173805870 173808350 -44228808 - L1MA3 LINE L1 0 6305 3722 2487 62 0 16 chr3 173808350 173808655 -44228503 - AluY SINE Alu -11 300 1 13093 168 29 10 chr3 173808655 173809944 -44227214 - L1MA3 LINE L1 -2583 3722 2459 180 97 0 0 chr3 173809944 173809975 -44227183 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 8658 61 7 0 chr3 173809975 173810631 -44226527 - L1PA6 LINE L1 -18 6136 5486 2225 92 0 3 chr3 173810631 173810923 -44226235 - AluY SINE Alu -20 291 1 8658 61 7 0 chr3 173810923 173812157 -44225001 - L1PA6 LINE L1 -668 5486 4249 2350 55 17 0 chr3 173812157 173812450 -44224708 + L1PA6 LINE L1 3978 4275 -1871 1572 233 47 22 chr3 173812467 173812870 -44224288 + L1ME LINE L1 5320 5732 -430 384 284 9 0 chr3 173812870 173812986 -44224172 + L1ME2 LINE L1 5634 5750 -428 2010 192 39 12 chr3 173812988 173813395 -44223763 + MER65C LTR ERV1 1 418 -43 1435 177 129 43 chr3 173813424 173813796 -44223362 + L1ME2 LINE L1 5752 6155 -9 22 0 0 0 chr3 173813852 173813874 -44223284 + AT_rich Low_complexity Low_complexity 1 22 0 341 337 39 39 chr3 173813895 173813990 -44223168 - L1M4 LINE L1 -2264 5301 5204 2001 155 0 3 chr3 173813990 173814300 -44222858 - AluSg SINE Alu -1 309 1 341 337 39 39 chr3 173814300 173814382 -44222776 - L1M4 LINE L1 -2360 5205 5124 413 230 86 59 chr3 173814585 173814737 -44222421 + MER104 DNA Tc2 22 177 -3 470 257 30 8 chr3 173814752 173814906 -44222252 + L1MC5 LINE L1 6629 6803 -1011 2013 176 62 5 chr3 173817130 173817534 -44219624 + L1P LINE L1 1716 2142 -4004 18143 68 8 8 chr3 173817537 173820796 -44216362 - L1PA5 LINE L1 -2 6152 2893 20823 161 23 13 chr3 173820797 173824623 -44212535 - L1M4 LINE L1 -3687 3878 11 1451 236 3 11 chr3 173824619 173824975 -44212183 - L1ME LINE L1 -560 5675 5323 * 3222 120 2 73 chr3 173824998 173825531 -44211627 + MER1A DNA MER1_type 35 529 0 914 228 77 26 chr3 173825550 173825940 -44211218 - L1ME LINE L1 -937 5278 4869 6270 251 45 14 chr3 173825945 173828097 -44209061 - L1ME LINE L1 -1410 4805 2586 1472 286 87 34 chr3 173828095 173828777 -44208381 - L1ME LINE L1 -5627 769 52 * 2227 118 0 0 chr3 173828812 173829108 -44208050 + AluSq SINE Alu 1 296 -17 694 211 163 45 chr3 173829187 173829542 -44207616 - L1M4 LINE L1 -979 5101 4705 442 211 128 16 chr3 173829641 173830016 -44207142 - L1ME LINE L1 -2955 3125 2592 1659 180 0 53 chr3 173830206 173830528 -44206630 - AluJb SINE Alu -7 305 1 1159 270 74 39 chr3 173830529 173831421 -44205737 - L1ME LINE L1 -4725 1357 538 241 312 39 39 chr3 173831781 173831986 -44205172 - L1ME LINE L1 -5612 458 254 523 91 0 1 chr3 173832986 173833227 -44203931 - AluSc SINE Alu -17 292 20 435 258 52 75 chr3 173836194 173836446 -44200712 - L1MC4 LINE L1 -8 8034 7789 186 192 0 0 chr3 173837267 173837319 -44199839 + CT-rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr3 173840044 173840066 -44197092 + AT_rich Low_complexity Low_complexity 1 22 0 9150 199 49 27 chr3 173840413 173841219 -44195939 - Cheshire DNA MER1_type 0 2420 1633 688 218 12 24 chr3 173841219 173841384 -44195774 - FRAM SINE Alu 0 166 4 9150 199 49 27 chr3 173841384 173842943 -44194215 - Cheshire DNA MER1_type -787 1633 1 237 203 94 0 chr3 173843441 173843505 -44193653 - LTR67 LTR ERVL -250 307 238 382 342 59 0 chr3 173843829 173843981 -44193177 + L2 LINE L2 3112 3272 0 1248 310 49 75 chr3 173844026 173844073 -44193085 - L2 LINE L2 -555 2759 2712 2195 104 3 3 chr3 173844073 173844380 -44192778 - AluSx SINE Alu -5 307 1 1248 310 49 75 chr3 173844380 173845263 -44191895 - L2 LINE L2 -602 2712 1853 807 185 6 46 chr3 173845338 173845511 -44191647 + MER76 LTR ERV 1 166 -522 182 250 0 39 chr3 173845959 173846011 -44191147 - MIR SINE MIR -27 235 186 438 301 38 9 chr3 173846995 173847309 -44189849 - L1ME LINE L1 -297 5824 5478 7702 21 0 1 chr3 173847321 173848802 -44188356 - L1PA3 LINE L1 0 6155 4679 1516 105 0 71 chr3 173849033 173849272 -44187886 - AluSg/x SINE Alu -15 297 76 2145 102 0 7 chr3 173849688 173849998 -44187160 + AluSq SINE Alu 1 308 0 22 35 0 0 chr3 173850662 173850691 -44186467 + AT_rich Low_complexity Low_complexity 1 29 0 247 250 200 30 chr3 173850738 173850838 -44186320 - L2 LINE L2 0 3313 3197 6093 30 3 0 chr3 173851232 173851967 -44185191 - L1P LINE L1 -1310 4836 4100 457 288 26 13 chr3 173852318 173852471 -44184687 + MIR SINE MIR 74 228 -34 2017 110 0 0 chr3 173852875 173853147 -44184011 - AluY SINE Alu -39 272 1 603 303 71 8 chr3 173853538 173853917 -44183241 + L1ME4a LINE L1 5701 6103 -18 450 287 105 33 chr3 173853919 173854100 -44183058 - MER91A DNA MER1_type -1 195 2 29 0 0 0 chr3 173854110 173854139 -44183019 + AT_rich Low_complexity Low_complexity 1 29 0 353 286 114 21 chr3 173854402 173854542 -44182616 + MER117 DNA MER1_type 5 157 -40 1377 221 68 19 chr3 173854612 173854937 -44182221 + MER2 DNA MER2_type 4 344 0 339 25 0 0 chr3 173855943 173855983 -44181175 + (TCCA)n Simple_repeat Simple_repeat 1 40 0 2154 59 0 25 chr3 173856289 173856600 -44180558 - AluY SINE Alu 0 305 2 1389 191 46 25 chr3 173856938 173857221 -44179937 + AluJo SINE Alu 1 289 -23 21 36 0 0 chr3 173857297 173857325 -44179833 + AT_rich Low_complexity Low_complexity 1 28 0 347 360 55 20 chr3 173858818 173859018 -44178140 - MIR SINE MIR -55 207 1 189 171 0 0 chr3 173859316 173859351 -44177807 + (TATG)n Simple_repeat Simple_repeat 1 35 0 341 230 62 62 chr3 173859365 173859543 -44177615 - L1MEd LINE L1 -3786 2343 2166 594 300 71 39 chr3 173859740 173860424 -44176734 - L1MEd LINE L1 -838 1652 860 467 317 49 65 chr3 173861411 173861717 -44175441 - L2 LINE L2 -556 2758 2458 1003 266 82 0 chr3 173861834 173862138 -44175020 + MER46C DNA MER2_type 9 337 -1 240 306 126 0 chr3 173862208 173862319 -44174839 + L1MC/D LINE L1 5799 5923 -1885 264 59 0 0 chr3 173862347 173862381 -44174777 + (CA)n Simple_repeat Simple_repeat 2 35 0 186 133 0 0 chr3 173862457 173862487 -44174671 + (TG)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr3 173862653 173862674 -44174484 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr3 173864281 173864312 -44172846 + AT_rich Low_complexity Low_complexity 1 31 0 1827 142 4 11 chr3 173865335 173865660 -44171498 - AluSx SINE Alu 0 326 4 27 29 0 0 chr3 173865683 173865717 -44171441 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr3 173866009 173866037 -44171121 + AT_rich Low_complexity Low_complexity 1 28 0 198 209 0 0 chr3 173866347 173866390 -44170768 + (TCCA)n Simple_repeat Simple_repeat 3 45 0 22 35 0 0 chr3 173866676 173866705 -44170453 + AT_rich Low_complexity Low_complexity 1 29 0 1003 201 108 8 chr3 173867300 173867568 -44169590 - L1MC4 LINE L1 -820 7222 6928 688 262 75 23 chr3 173867565 173867989 -44169169 - L1MC4a LINE L1 -1313 6495 5976 * 206 209 0 58 chr3 173868002 173868088 -44169070 + T-rich Low_complexity Low_complexity 4 84 0 873 217 159 0 chr3 173868147 173868354 -44168804 - LTR40a LTR ERVL -14 505 266 22 0 0 0 chr3 173868578 173868600 -44168558 + AT_rich Low_complexity Low_complexity 1 22 0 1987 134 3 16 chr3 173868678 173868992 -44168166 - AluSx SINE Alu 0 312 3 466 270 176 7 chr3 173869482 173869630 -44167528 - MER5A DNA MER1_type 0 189 17 304 321 28 9 chr3 173873284 173873393 -44163765 + MIR3 SINE MIR 87 197 -11 21 36 0 0 chr3 173876174 173876202 -44160956 + AT_rich Low_complexity Low_complexity 1 28 0 29 28 0 0 chr3 173877453 173877489 -44159669 + AT_rich Low_complexity Low_complexity 1 36 0 1734 136 21 0 chr3 173877618 173877905 -44159253 + L1MA9 LINE L1 6020 6312 0 274 304 69 29 chr3 173878385 173878487 -44158671 - L2 LINE L2 -5 3267 3162 202 348 49 39 chr3 173878717 173878921 -44158237 + L2 LINE L2 2449 2654 -660 38691 63 4 3 chr3 173879610 173884652 -44152506 - L1P LINE L1 -1086 5060 12 350 286 9 0 chr3 173884668 173884773 -44152385 - L1ME LINE L1 -437 5684 5579 418 310 88 18 chr3 173884827 173885111 -44152047 - L1MC4a LINE L1 -297 5824 5521 2059 120 40 72 chr3 173885119 173885495 -44151663 - THE1B LTR MaLR 0 364 1 334 221 13 0 chr3 173885900 173885977 -44151181 - MER116 DNA Mariner 0 80 3 318 249 166 36 chr3 173887045 173887238 -44149920 - L1ME4a LINE L1 -151 5970 5753 2088 88 0 0 chr3 173887245 173887518 -44149640 - AluY SINE Alu -1 310 38 22 0 0 0 chr3 173887723 173887745 -44149413 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 173888639 173888660 -44148498 + AT_rich Low_complexity Low_complexity 1 21 0 1952 116 32 3 chr3 173888773 173888935 -44148223 - AluSc SINE Alu -16 293 118 407 19 19 0 chr3 173888935 173888987 -44148171 + (TG)n Simple_repeat Simple_repeat 2 54 0 1952 116 32 3 chr3 173888987 173889109 -44148049 - AluSc SINE Alu -191 118 1 435 228 189 8 chr3 173889957 173890084 -44147074 - MER58B DNA MER1_type 0 341 192 337 286 218 36 chr3 173893058 173893278 -44143880 + MIR SINE MIR 2 261 -1 2808 25 0 0 chr3 173893300 173893614 -44143544 + AluYb8 SINE Alu 1 314 -4 390 367 60 0 chr3 173893976 173894126 -44143032 - L2 LINE L2 -12 3260 3102 181 326 0 0 chr3 173894225 173894268 -44142890 - L2 LINE L2 -226 3046 3004 2679 68 11 6 chr3 173894332 173894550 -44142608 + THE1A LTR MaLR 1 223 -132 2357 107 0 0 chr3 173894550 173894860 -44142298 + AluSg SINE Alu 1 310 0 2679 68 11 6 chr3 173894860 173894994 -44142164 + THE1A LTR MaLR 223 355 0 11066 100 23 1 chr3 173894994 173896539 -44140619 + THE1A-int LTR MaLR 1 1580 0 2706 85 3 0 chr3 173896539 173896893 -44140265 + THE1A LTR MaLR 1 355 0 5198 239 135 40 chr3 173896974 173898284 -44138874 + L1ME1 LINE L1 20 1204 -5192 1808 148 64 0 chr3 173898284 173898567 -44138591 + AluSx SINE Alu 1 301 -11 5198 239 135 40 chr3 173898567 173899226 -44137932 + L1ME1 LINE L1 1204 1799 -4597 2125 99 3 30 chr3 173899226 173899530 -44137628 + AluSx SINE Alu 1 296 -16 5198 239 135 40 chr3 173899530 173899747 -44137411 + L1ME1 LINE L1 1799 2415 -3981 878 256 64 27 chr3 173899729 173900057 -44137101 + L1ME1 LINE L1 4576 4915 -1300 * 256 143 36 0 chr3 173900065 173900121 -44137037 + (TA)n Simple_repeat Simple_repeat 1 58 0 934 239 14 39 chr3 173900148 173900432 -44136726 + L1ME1 LINE L1 4904 5180 -1035 830 226 0 11 chr3 173900449 173900630 -44136528 + FRAM SINE Alu 1 173 -3 2465 217 54 5 chr3 173900711 173901301 -44135857 + L1ME1 LINE L1 5340 5958 -277 291 180 0 0 chr3 173901298 173901359 -44135799 + L1MA10 LINE L1 6272 6332 -2 * 345 302 70 23 chr3 173901457 173901586 -44135572 + L2 LINE L2 3137 3271 -1 1520 163 27 47 chr3 173901838 173902139 -44135019 - AluJo SINE Alu -13 299 5 23 0 0 0 chr3 173902158 173902181 -44134977 + AT_rich Low_complexity Low_complexity 1 23 0 985 113 0 0 chr3 173902182 173902324 -44134834 - L1MA2 LINE L1 -4 6300 6159 23 0 0 0 chr3 173902856 173902879 -44134279 + AT_rich Low_complexity Low_complexity 1 23 0 6826 139 16 9 chr3 173902879 173904861 -44132297 - L1PA12 LINE L1 -10 6158 4172 5119 169 6 8 chr3 173904862 173905771 -44131387 - L1PA12 LINE L1 -1903 4243 3337 1201 183 0 5 chr3 173905897 173906110 -44131048 + AluJb SINE Alu 86 297 -15 2055 137 0 3 chr3 173906142 173906449 -44130709 + AluJb SINE Alu 1 306 -6 2633 26 7 0 chr3 173906929 173907231 -44129927 + AluY SINE Alu 2 305 -6 2054 96 0 7 chr3 173907714 173908020 -44129138 + AluY SINE Alu 3 306 0 391 295 94 37 chr3 173908201 173908734 -44128424 - L1 LINE L1 -1465 4681 4115 4154 192 76 33 chr3 173908751 173909969 -44127189 - L1MD1 LINE L1 -16 6226 4943 1639 151 22 41 chr3 173909969 173909988 -44127170 - AluJb SINE Alu 0 312 294 363 60 0 0 chr3 173909988 173910038 -44127120 + (TG)n Simple_repeat Simple_repeat 2 51 0 1639 151 22 41 chr3 173910038 173910336 -44126822 - AluJb SINE Alu -18 294 1 1770 178 0 3 chr3 173910368 173910666 -44126492 - AluJo SINE Alu -15 297 1 1345 121 58 27 chr3 173910721 173910824 -44126334 - MER30 DNA MER1_type 0 230 132 261 57 0 0 chr3 173910824 173910859 -44126299 + (TG)n Simple_repeat Simple_repeat 2 36 0 1345 121 58 27 chr3 173910859 173910978 -44126180 - MER30 DNA MER1_type -98 132 1 339 137 0 0 chr3 173911134 173911185 -44125973 + AluJb SINE Alu 74 124 -178 1956 126 52 25 chr3 173911920 173912285 -44124873 + THE1C LTR MaLR 1 375 0 187 324 14 27 chr3 173913401 173913475 -44123683 - MER5B DNA MER1_type 0 178 106 486 120 0 0 chr3 173914057 173914132 -44123026 + (TTC)n Simple_repeat Simple_repeat 2 76 0 592 75 0 0 chr3 173914430 173914510 -44122648 - MADE1 DNA Mariner 0 80 1 1040 259 101 35 chr3 173914538 173914778 -44122380 - L1MEc LINE L1 -4312 1949 1726 243 0 0 0 chr3 173914778 173914805 -44122353 + (CA)n Simple_repeat Simple_repeat 2 28 0 1040 259 101 35 chr3 173914805 173915020 -44122138 - L1MEc LINE L1 -4535 1726 1464 697 154 73 29 chr3 173915050 173915186 -44121972 - AluJo SINE Alu -162 150 9 1241 244 47 86 chr3 173915210 173916145 -44121013 - L1MEc LINE L1 -4801 1281 389 238 278 21 21 chr3 173916532 173916629 -44120529 - L1MEc LINE L1 -5932 138 42 311 267 112 44 chr3 173916664 173916870 -44120288 - L1ME4a LINE L1 -109 6012 5793 25496 41 4 2 chr3 173917033 173920995 -44116163 - L1PA5 LINE L1 -3 6151 2187 1642 122 3 27 chr3 173921097 173921393 -44115765 - L1P5 LINE L1 -575 5581 5293 2172 128 3 0 chr3 173921646 173921950 -44115208 - AluSx SINE Alu -5 307 3 1806 171 17 0 chr3 173922135 173922428 -44114730 - AluJb SINE Alu -13 299 2 802 187 0 0 chr3 173922430 173922569 -44114589 - MLT1B LTR MaLR -59 331 193 269 113 57 9 chr3 173923813 173923919 -44113239 + (TA)n Simple_repeat Simple_repeat 2 112 0 1701 188 0 13 chr3 173923944 173924248 -44112910 + AluJo SINE Alu 1 300 -12 493 295 0 0 chr3 173924659 173924781 -44112377 + Charlie8 DNA MER1_type 141 262 -2155 307 394 89 4 chr3 173925021 173925290 -44111868 + L2 LINE L2 2469 2760 -554 556 244 127 34 chr3 173925297 173925502 -44111656 - MER58A DNA MER1_type 0 224 1 2328 86 23 0 chr3 173925943 173926245 -44110913 - AluSc SINE Alu 0 309 1 373 235 25 8 chr3 173927107 173927226 -44109932 - L1M4 LINE L1 -982 5164 5044 27 29 0 0 chr3 173927306 173927340 -44109818 + AT_rich Low_complexity Low_complexity 1 34 0 401 240 116 0 chr3 173927868 173927989 -44109169 - MER44D DNA MER2_type 0 605 471 1383 103 79 48 chr3 173928015 173928267 -44108891 - MER44D DNA MER2_type -79 530 1 22 35 0 0 chr3 173928675 173928704 -44108454 + AT_rich Low_complexity Low_complexity 1 29 0 24 77 0 0 chr3 173928901 173928953 -44108205 + AT_rich Low_complexity Low_complexity 1 52 0 306 286 64 53 chr3 173929190 173929361 -44107797 - L1ME4a LINE L1 -378 5784 5612 313 98 279 0 chr3 173929371 173929432 -44107726 - MADE1 DNA Mariner -2 78 1 223 284 39 20 chr3 173930429 173930531 -44106627 + L2 LINE L2 2550 2653 -661 1562 159 24 17 chr3 173930687 173930983 -44106175 - L1MB5 LINE L1 -8 6166 5869 961 215 34 15 chr3 173930994 173931011 -44106147 - L1MB5 LINE L1 -410 5764 5749 279 54 0 0 chr3 173931011 173931048 -44106110 + (CA)n Simple_repeat Simple_repeat 2 38 0 961 215 34 15 chr3 173931048 173931296 -44105862 - L1MB5 LINE L1 -425 5749 5519 272 320 109 0 chr3 173931360 173931488 -44105670 + MIR SINE MIR 108 249 -13 251 138 17 35 chr3 173931538 173931596 -44105562 - MER52C LTR ERV1 0 1278 1222 * 4560 188 92 131 chr3 173931586 173933072 -44104086 - MER52A LTR ERV1 -241 1514 86 1848 159 3 10 chr3 173934155 173934451 -44102707 + AluJb SINE Alu 3 296 -16 292 316 0 13 chr3 173935268 173935347 -44101811 - MIR SINE MIR -149 113 36 2135 125 7 3 chr3 173935356 173935661 -44101497 - AluSx SINE Alu -6 306 1 771 228 16 16 chr3 173936579 173936763 -44100395 + MIR SINE MIR 71 254 -8 296 358 90 0 chr3 173936778 173936912 -44100246 + MIR SINE MIR 1 146 -116 333 0 0 0 chr3 173936913 173936950 -44100208 + (TAA)n Simple_repeat Simple_repeat 2 38 0 26 0 0 0 chr3 173936964 173936990 -44100168 + AT_rich Low_complexity Low_complexity 1 26 0 248 240 183 10 chr3 173937008 173937112 -44100046 + MIR SINE MIR 139 260 -2 12798 72 11 7 chr3 173937252 173939789 -44097369 - L1PA7 LINE L1 -3 6151 3607 212 284 25 12 chr3 173941194 173941275 -44095883 - MIR SINE MIR 0 262 181 24 32 0 0 chr3 173941339 173941370 -44095788 + AT_rich Low_complexity Low_complexity 1 31 0 2830 230 54 38 chr3 173942361 173943346 -44093812 - L1ME1 LINE L1 -12 6154 5170 4742 221 68 50 chr3 173943349 173945742 -44091416 - L1ME1 LINE L1 -16 6219 3808 22 35 0 0 chr3 173946887 173946916 -44090242 + AT_rich Low_complexity Low_complexity 1 29 0 378 0 0 0 chr3 173947261 173947303 -44089855 + (TTA)n Simple_repeat Simple_repeat 1 42 0 1249 158 71 60 chr3 173947308 173947574 -44089584 - AluJb SINE Alu -23 289 21 290 217 14 43 chr3 173947947 173948016 -44089142 - L2 LINE L2 -1 3312 3246 241 296 133 0 chr3 173948020 173948118 -44089040 - L1ME1 LINE L1 -5915 481 371 198 171 0 0 chr3 173948158 173948199 -44088959 + CT-rich Low_complexity Low_complexity 4 44 0 357 82 0 0 chr3 173948239 173948288 -44088870 + (TCCC)n Simple_repeat Simple_repeat 4 52 0 1739 111 118 15 chr3 173948292 173948563 -44088595 - AluSg SINE Alu -11 299 1 696 278 33 83 chr3 173948564 173948924 -44088234 - L1ME1 LINE L1 -6018 378 37 478 234 19 19 chr3 173948934 173949092 -44088066 - L1M4 LINE L1 -3362 3020 2863 322 286 60 22 chr3 173949103 173949285 -44087873 - L1M4 LINE L1 -4782 1602 1414 900 180 0 0 chr3 173949398 173949548 -44087610 + MSTB LTR MaLR 1 150 -276 186 192 0 0 chr3 173951371 173951423 -44085735 + CT-rich Low_complexity Low_complexity 1 52 0 2157 115 0 0 chr3 173952427 173952723 -44084435 - AluSx SINE Alu -16 296 1 588 295 26 6 chr3 173953044 173953200 -44083958 + MIR SINE MIR 1 159 -103 180 270 0 0 chr3 173953239 173953276 -44083882 + MIR SINE MIR 18 54 -208 642 304 0 0 chr3 173953567 173953728 -44083430 - AluSg/x SINE Alu -16 296 136 266 347 7 28 chr3 173953729 173953873 -44083285 + CT-rich Low_complexity Low_complexity 1 141 0 * 271 367 0 0 chr3 173953832 173953960 -44083198 + C-rich Low_complexity Low_complexity 1 128 0 227 186 0 34 chr3 173954116 173954175 -44082983 + G-rich Low_complexity Low_complexity 2 58 0 1383 208 31 7 chr3 173954531 173954819 -44082339 + AluJo SINE Alu 1 295 -17 1005 94 44 11 chr3 173955785 173955966 -44081192 - L1PA4 LINE L1 -160 5995 5809 4840 159 38 38 chr3 173955975 173956990 -44080168 + L1P LINE L1 2133 3147 -2999 321 250 60 77 chr3 174007042 174007210 -44029948 + HAL1 LINE L1 876 1040 -1467 1943 131 75 16 chr3 174007358 174007679 -44029479 + Tigger1 DNA MER2_type 2079 2418 0 369 224 13 0 chr3 174007881 174007957 -44029201 - MER5A DNA MER1_type -111 78 2 2048 136 7 0 chr3 174008593 174008901 -44028257 - AluSq SINE Alu -3 310 1 24 67 0 0 chr3 174009023 174009068 -44028090 + AT_rich Low_complexity Low_complexity 1 45 0 1228 76 0 0 chr3 174009429 174009587 -44027571 - L1PA8 LINE L1 -13 6159 6002 355 99 0 111 chr3 174009725 174009806 -44027352 - L1PA11 LINE L1 0 6174 6103 313 288 92 39 chr3 174010141 174010294 -44026864 - MIR SINE MIR -2 260 100 21 36 0 0 chr3 174010688 174010716 -44026442 + AT_rich Low_complexity Low_complexity 1 28 0 13984 185 19 19 chr3 174012153 174015794 -44021364 + L1PA15 LINE L1 2357 5995 -170 933 101 0 0 chr3 174015895 174016024 -44021134 + L1PA15 LINE L1 6024 6152 -13 568 323 6 0 chr3 174016489 174016653 -44020505 - MIR SINE MIR 0 262 98 347 263 54 55 chr3 174017161 174017350 -44019808 + L1ME LINE L1 5575 5778 -343 287 293 55 61 chr3 174017360 174017524 -44019634 + L2 LINE L2 2873 3035 -237 231 88 0 0 chr3 174018114 174018148 -44019010 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 27 0 0 0 chr3 174018549 174018576 -44018582 + AT_rich Low_complexity Low_complexity 1 27 0 434 299 15 30 chr3 174024641 174024775 -44012383 + MIR SINE MIR 21 152 -56 2146 85 18 47 chr3 174025356 174025463 -44011695 + L1PA13 LINE L1 5830 5939 -224 2056 121 0 3 chr3 174025463 174025778 -44011380 + AluSx SINE Alu 1 314 0 2146 85 18 47 chr3 174025778 174026008 -44011150 + L1PA13 LINE L1 5939 6159 -4 570 304 16 16 chr3 174026179 174026373 -44010785 + L2 LINE L2 3100 3293 -20 210 300 12 25 chr3 174026558 174026638 -44010520 + L2 LINE L2 2708 2786 -528 357 291 120 86 chr3 174026998 174027349 -44009809 + L2 LINE L2 2936 3298 -15 198 296 0 19 chr3 174027301 174027355 -44009803 + MIR SINE MIR 206 258 -4 * 22 35 0 0 chr3 174027526 174027555 -44009603 + AT_rich Low_complexity Low_complexity 1 29 0 715 269 29 21 chr3 174027876 174028118 -44009040 - L1ME LINE L1 -454 5708 5465 1000 199 0 0 chr3 174028136 174028312 -44008846 - FRAM SINE Alu 0 176 1 431 234 40 23 chr3 174028316 174028491 -44008667 - L1ME LINE L1 -731 5431 5254 223 319 43 32 chr3 174029022 174029116 -44008042 + L2 LINE L2 2977 3071 -201 620 225 16 0 chr3 174029305 174029434 -44007724 + FLAM_C SINE Alu 3 133 -10 281 136 0 0 chr3 174029434 174029493 -44007665 - L1P LINE L1 -2998 3148 3090 5158 120 3 0 chr3 174029497 174030257 -44006901 + L1P LINE L1 4517 5278 -868 6287 148 7 7 chr3 174030362 174031394 -44005764 - Tigger1 DNA MER2_type -1237 1181 150 7121 49 5 0 chr3 174031394 174032906 -44004252 + L1PA5 LINE L1 4616 6132 -22 289 270 165 10 chr3 174032944 174033144 -44004014 + L1M4 LINE L1 2680 2910 -3236 238 281 47 0 chr3 174033228 174033292 -44003866 + MER5A DNA MER1_type 123 189 0 22 0 0 0 chr3 174033855 174033877 -44003281 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr3 174034607 174034637 -44002521 + AT_rich Low_complexity Low_complexity 1 30 0 234 274 27 5 chr3 174034827 174034945 -44002213 + MIR SINE MIR 59 233 -29 452 269 55 0 chr3 174036658 174036803 -44000355 + MER103 DNA DNA 13 165 -1 598 28 0 0 chr3 174036891 174036963 -44000195 - L1PA5 LINE L1 -5 6149 6078 181 231 0 0 chr3 174037250 174037289 -43999869 + L2 LINE L2 3019 3057 -256 25 51 0 0 chr3 174038065 174038104 -43999054 + AT_rich Low_complexity Low_complexity 1 39 0 305 205 92 147 chr3 174040191 174040624 -43996534 - L1ME4a LINE L1 -141 5980 5576 1678 153 50 7 chr3 174040644 174040925 -43996233 - AluJo SINE Alu -14 298 6 472 260 106 77 chr3 174040994 174041498 -43995660 - HAL1 LINE L1 -938 1569 1198 710 213 65 24 chr3 174041501 174041670 -43995488 + MIR SINE MIR 77 252 -10 305 238 36 156 chr3 174041747 174042049 -43995109 - HAL1 LINE L1 -1417 1090 825 2412 90 0 0 chr3 174042959 174043269 -43993889 + AluSx SINE Alu 1 310 -2 211 333 135 22 chr3 174043545 174043767 -43993391 - L2 LINE L2 -222 3050 2804 22 0 0 0 chr3 174043770 174043792 -43993366 + AT_rich Low_complexity Low_complexity 1 22 0 251 330 134 10 chr3 174043938 174044035 -43993123 - L2 LINE L2 0 3272 3164 408 336 90 48 chr3 174044067 174044445 -43992713 - L2 LINE L2 -665 2649 2256 258 156 0 0 chr3 174044618 174044682 -43992476 + T-rich Low_complexity Low_complexity 1 64 0 294 118 78 0 chr3 174045261 174045312 -43991846 + MADE1 DNA Mariner 2 56 -24 312 120 0 0 chr3 174045329 174045379 -43991779 + MADE1 DNA Mariner 31 80 0 222 159 0 143 chr3 174049900 174049963 -43987195 + L2 LINE L2 3219 3272 0 188 383 109 10 chr3 174050489 174050690 -43986468 - L3 LINE CR1 -1126 451 231 575 246 93 22 chr3 174051643 174051826 -43985332 - MIR SINE MIR -34 228 33 432 255 143 25 chr3 174053534 174053695 -43983463 + MIR SINE MIR 33 212 -50 1439 162 13 0 chr3 174053697 174053925 -43983233 + AluJo SINE Alu 1 231 -81 372 325 16 37 chr3 174054086 174054277 -43982881 - L2 LINE L2 -1 3312 3126 230 225 183 0 chr3 174054289 174054360 -43982798 + MIR SINE MIR 81 164 -98 2347 62 0 0 chr3 174054862 174055150 -43982008 - AluY SINE Alu -23 288 1 456 258 291 0 chr3 174055404 174055586 -43981572 + MIR SINE MIR 3 237 -25 24 32 0 0 chr3 174055751 174055782 -43981376 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr3 174056195 174056224 -43980934 + AT_rich Low_complexity Low_complexity 1 29 0 2322 101 21 3 chr3 174057085 174057422 -43979736 + L1PA10 LINE L1 5815 6157 -11 917 188 0 12 chr3 174057437 174057597 -43979561 + FRAM SINE Alu 1 157 -19 536 270 222 0 chr3 174058294 174058479 -43978679 + MIR SINE MIR 28 253 -9 22 35 0 0 chr3 174058646 174058675 -43978483 + AT_rich Low_complexity Low_complexity 1 29 0 206 222 0 0 chr3 174059041 174059086 -43978072 + CT-rich Low_complexity Low_complexity 4 48 0 1614 268 66 12 chr3 174059109 174059632 -43977526 + MLT1G1 LTR MaLR 1 590 -5 370 304 56 8 chr3 174059972 174060097 -43977061 - MER117 DNA MER1_type -44 153 23 239 283 75 25 chr3 174060476 174060596 -43976562 - MIR SINE MIR -6 256 131 21 57 0 0 chr3 174060610 174060645 -43976513 + AT_rich Low_complexity Low_complexity 1 35 0 256 179 15 45 chr3 174062830 174062897 -43974261 + CT-rich Low_complexity Low_complexity 4 68 0 209 349 145 0 chr3 174063033 174063116 -43974042 - L2 LINE L2 -10 3262 3168 719 257 6 17 chr3 174063322 174063497 -43973661 + MIR3 SINE MIR 33 205 -3 410 200 182 18 chr3 174063666 174063776 -43973382 - L2 LINE L2 -15 3298 3171 482 234 0 21 chr3 174063914 174064008 -43973150 + MER81 DNA DNA 18 109 -5 328 312 62 97 chr3 174064017 174064418 -43972740 - L2 LINE L2 -398 2916 2530 198 0 0 0 chr3 174064933 174064955 -43972203 + (TTA)n Simple_repeat Simple_repeat 3 24 0 24294 27 3 3 chr3 174064955 174068660 -43968498 - L1PA3 LINE L1 -18 6137 2435 491 247 85 38 chr3 174068953 174069269 -43967889 + L1MB1 LINE L1 5004 5334 -812 268 316 93 31 chr3 174069521 174069714 -43967444 - L2 LINE L2 -1372 1942 1738 350 308 34 0 chr3 174070106 174070252 -43966906 + L1MC4a LINE L1 4459 4609 -1537 268 287 86 6 chr3 174070582 174070756 -43966402 - L1ME LINE L1 -225 5896 5709 828 257 31 43 chr3 174071241 174071498 -43965660 + MIR SINE MIR 6 259 -3 325 333 20 7 chr3 174071873 174072020 -43965138 + L1MC4a LINE L1 5749 5897 -1911 1732 180 16 21 chr3 174072317 174072700 -43964458 + L1MB1 LINE L1 5785 6165 -3 291 28 0 0 chr3 174072719 174072755 -43964403 + (TAAAA)n Simple_repeat Simple_repeat 3 38 0 186 281 0 0 chr3 174072785 174072849 -43964309 + (TAG)n Simple_repeat Simple_repeat 1 64 0 312 211 83 37 chr3 174072916 174073025 -43964133 - MER117 DNA MER1_type -52 145 32 272 333 135 24 chr3 174073222 174073348 -43963810 - L2 LINE L2 -9 3263 3124 306 264 0 58 chr3 174073384 174073471 -43963687 + L2 LINE L2 3227 3308 -5 629 244 25 0 chr3 174073572 174073732 -43963426 - MER103 DNA DNA -1 165 2 22 0 0 0 chr3 174074307 174074329 -43962829 + AT_rich Low_complexity Low_complexity 1 22 0 217 288 51 0 chr3 174076609 174076668 -43960490 - MIR3 SINE MIR -142 66 5 21 0 0 0 chr3 174076943 174076964 -43960194 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 174077780 174077804 -43959354 + AT_rich Low_complexity Low_complexity 1 24 0 202 315 162 9 chr3 174078614 174078725 -43958433 - L2 LINE L2 -9 3263 3136 21 0 0 0 chr3 174078915 174078936 -43958222 + AT_rich Low_complexity Low_complexity 1 21 0 210 277 0 0 chr3 174078985 174079032 -43958126 + (CATA)n Simple_repeat Simple_repeat 3 49 0 896 266 8 34 chr3 174079285 174079522 -43957636 - MIR SINE MIR -27 235 5 12474 58 5 2 chr3 174079931 174081836 -43955322 + L1P2 LINE L1 3747 5653 -502 302 306 210 18 chr3 174082711 174082930 -43954228 + MIR SINE MIR 2 262 0 22 0 0 0 chr3 174083578 174083600 -43953558 + AT_rich Low_complexity Low_complexity 1 22 0 249 269 229 25 chr3 174083848 174084049 -43953109 + MER112 DNA MER1_type 17 258 -2 2406 30 0 3 chr3 174084113 174084414 -43952744 - L1PA4 LINE L1 -772 5374 5075 * 3619 32 2 2 chr3 174084405 174084843 -43952315 + L1PA4 LINE L1 5392 5829 -326 553 243 158 0 chr3 174084980 174085132 -43952026 + L1MDa LINE L1 16 191 -6349 446 273 123 45 chr3 174085543 174086107 -43951051 - L1ME4a LINE L1 -178 5943 5352 816 305 68 14 chr3 174086868 174087307 -43949851 + LTR16B LTR ERVL 2 464 0 1918 110 51 57 chr3 174087743 174088027 -43949131 - L1MA6 LINE L1 -45 6255 5972 2071 96 17 0 chr3 174088027 174088318 -43948840 - AluSx SINE Alu -12 300 5 1918 110 51 57 chr3 174088318 174088387 -43948771 - L1MA6 LINE L1 -328 5972 5904 1147 158 5 16 chr3 174088544 174088734 -43948424 - AluJo SINE Alu -124 188 1 4311 27 2 2 chr3 174088766 174089281 -43947877 + L1PA4 LINE L1 5640 6154 -1 2863 148 39 14 chr3 174089789 174090361 -43946797 - Tigger1 DNA MER2_type -5 2413 1717 1639 175 0 34 chr3 174090541 174090833 -43946325 - AluJb SINE Alu -28 284 3 466 175 147 56 chr3 174090847 174090990 -43946168 - L2 LINE L2 0 3313 3158 10403 185 44 65 chr3 174090995 174091336 -43945822 + Tigger1 DNA MER2_type 1 348 -2070 213 39 0 0 chr3 174091336 174091362 -43945796 + (TC)n Simple_repeat Simple_repeat 2 27 0 10403 185 44 65 chr3 174091362 174093491 -43943667 + Tigger1 DNA MER2_type 348 2418 0 261 0 0 0 chr3 174093564 174093593 -43943565 + (TA)n Simple_repeat Simple_repeat 2 30 0 358 163 0 62 chr3 174093768 174093848 -43943310 + AluJ/FRAM SINE Alu 227 301 -1 355 248 83 18 chr3 174093994 174094103 -43943055 - L1 LINE L1 -2154 3992 3877 222 140 88 0 chr3 174095011 174095068 -43942090 + (TATAA)n Simple_repeat Simple_repeat 3 64 0 279 282 13 0 chr3 174097626 174097704 -43939454 + L2 LINE L2 3186 3264 -49 21 71 0 0 chr3 174097883 174097925 -43939233 + AT_rich Low_complexity Low_complexity 1 42 0 209 250 89 18 chr3 174098291 174098347 -43938811 + L3b LINE CR1 1500 1559 -24 27 29 0 0 chr3 174101047 174101081 -43936077 + AT_rich Low_complexity Low_complexity 1 34 0 218 430 47 0 chr3 174102141 174102227 -43934931 - L2 LINE L2 -42 3230 3141 502 261 93 2 chr3 174102494 174102664 -43934494 - MIR SINE MIR -63 145 16 309 303 71 39 chr3 174102743 174102898 -43934260 + MER5B DNA MER1_type 4 163 -15 2265 230 47 42 chr3 174103120 174103437 -43933721 + HsTC2a DNA MER2_type 1 315 -1585 2180 107 19 7 chr3 174103437 174103746 -43933412 + AluSq SINE Alu 1 313 0 2265 230 47 42 chr3 174103746 174104167 -43932991 + HsTC2a DNA MER2_type 315 743 -1 26 0 0 0 chr3 174105328 174105354 -43931804 + AT_rich Low_complexity Low_complexity 1 26 0 2270 106 0 0 chr3 174105862 174106165 -43930993 - AluY SINE Alu -8 303 1 198 91 0 0 chr3 174107223 174107256 -43929902 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 1914 138 43 30 chr3 174107728 174108098 -43929060 - THE1C LTR MaLR 0 375 1 268 254 0 48 chr3 174108513 174108576 -43928582 - MIR3 SINE MIR -9 199 140 928 244 89 14 chr3 174109324 174109721 -43927437 - MER57B LTR ERV1 0 403 4 4471 143 59 18 chr3 174109867 174110711 -43926447 - Tigger3(Golem) DNA MER2_type -2 3027 2149 1551 146 36 36 chr3 174110711 174110992 -43926166 - Tigger3(Golem) DNA MER2_type -2728 301 21 219 103 0 0 chr3 174111055 174111094 -43926064 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2023 121 4 4 chr3 174111095 174111375 -43925783 - AluSx SINE Alu -32 280 1 1083 199 42 5 chr3 174111483 174111699 -43925459 + MER58A DNA MER1_type 1 224 0 220 250 17 0 chr3 174111754 174111814 -43925344 + (TA)n Simple_repeat Simple_repeat 1 61 0 793 181 111 12 chr3 174112071 174112242 -43924916 - MER5A DNA MER1_type -1 188 1 24 67 0 0 chr3 174112786 174112831 -43924327 + AT_rich Low_complexity Low_complexity 1 45 0 1337 60 25 15 chr3 174112831 174113032 -43924126 - L1MB2 LINE L1 -1 6170 5968 14630 194 63 16 chr3 174113046 174113231 -43923927 - L1PB1 LINE L1 -3 6864 6689 2327 85 0 3 chr3 174113231 174113524 -43923634 - AluSc SINE Alu -17 292 1 14630 194 63 16 chr3 174113524 174114199 -43922959 - L1PB1 LINE L1 -178 6689 6047 198 0 0 0 chr3 174114199 174114221 -43922937 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 14630 194 63 16 chr3 174114221 174114885 -43922273 - L1PB1 LINE L1 -820 6047 5416 2340 82 7 0 chr3 174114885 174115177 -43921981 + AluY SINE Alu 1 294 -17 14630 194 63 16 chr3 174115177 174120196 -43916962 - L1PB1 LINE L1 -1451 5416 6 342 249 86 31 chr3 174120358 174120507 -43916651 + MIR SINE MIR 49 212 -50 216 327 112 9 chr3 174121346 174121453 -43915705 - L2 LINE L2 -222 3050 2933 199 356 33 61 chr3 174121513 174121693 -43915465 - L2 LINE L2 -235 3037 2863 1259 182 3 31 chr3 174121804 174122095 -43915063 + L1MA4 LINE L1 5053 5335 -811 426 235 0 41 chr3 174122096 174122194 -43914964 + FLAM_C SINE Alu 14 107 -36 30 0 0 0 chr3 174122194 174122224 -43914934 + AT_rich Low_complexity Low_complexity 1 30 0 1921 144 6 9 chr3 174122290 174122617 -43914541 + L1MA4 LINE L1 5318 5643 -657 220 102 41 0 chr3 174122622 174122671 -43914487 + (TA)n Simple_repeat Simple_repeat 2 52 0 3588 126 35 9 chr3 174122682 174123315 -43913843 + L1MA4 LINE L1 5642 6290 -10 1606 191 0 24 chr3 174123584 174123882 -43913276 + AluJo SINE Alu 1 291 -21 24 0 0 0 chr3 174123882 174123906 -43913252 + AT_rich Low_complexity Low_complexity 1 24 0 202 280 0 27 chr3 174124058 174124133 -43913025 + CT-rich Low_complexity Low_complexity 2 74 0 1323 174 117 0 chr3 174124329 174124576 -43912582 + Tigger7 DNA MER2_type 8 283 -2204 397 76 152 0 chr3 174124570 174124636 -43912522 + Tigger7 DNA MER2_type 2177 2252 -235 * 475 177 0 0 chr3 174124636 174124715 -43912443 - FLAM_A SINE Alu -26 116 38 1184 225 31 12 chr3 174124715 174125040 -43912118 - L1M4 LINE L1 -912 5234 4904 524 122 0 0 chr3 174125338 174125412 -43911746 + FLAM_A SINE Alu 43 116 -26 27 29 0 0 chr3 174125418 174125452 -43911706 + AT_rich Low_complexity Low_complexity 1 34 0 1281 258 45 61 chr3 174125480 174126119 -43911039 - L1ME3A LINE L1 -260 5910 5265 331 283 38 9 chr3 174126151 174126257 -43910901 - L1ME3A LINE L1 -985 5161 5053 1682 97 16 0 chr3 174126307 174126554 -43910604 - L1MA2 LINE L1 -1 6303 6053 409 275 7 14 chr3 174126718 174126900 -43910258 - L1ME3A LINE L1 -1538 4608 4428 42064 36 27 5 chr3 174126902 174132918 -43904240 - L1PA3 LINE L1 -3 6152 1 466 277 137 55 chr3 174132920 174133392 -43903766 - L1ME3A LINE L1 -1713 4433 3898 1235 209 51 57 chr3 174133392 174133688 -43903470 - AluJo SINE Alu -7 295 2 466 277 137 55 chr3 174133688 174133828 -43903330 - L1ME3A LINE L1 -2248 3898 3771 21 0 0 0 chr3 174133840 174133861 -43903297 + AT_rich Low_complexity Low_complexity 1 21 0 264 59 0 0 chr3 174133875 174133909 -43903249 + (TG)n Simple_repeat Simple_repeat 2 35 0 198 0 0 0 chr3 174133922 174133944 -43903214 + (T)n Simple_repeat Simple_repeat 1 22 0 246 262 65 19 chr3 174133956 174134063 -43903095 - L1ME3A LINE L1 -2413 3733 3622 25 31 0 0 chr3 174134259 174134291 -43902867 + AT_rich Low_complexity Low_complexity 1 32 0 1021 318 199 12 chr3 174134399 174135082 -43902076 + L2 LINE L2 1838 2648 -666 441 358 147 16 chr3 174135173 174135500 -43901658 - L2 LINE L2 -236 3077 2722 1010 271 108 0 chr3 174135523 174135811 -43901347 - L2 LINE L2 -1030 2284 1966 25 0 0 0 chr3 174136613 174136638 -43900520 + AT_rich Low_complexity Low_complexity 1 25 0 819 241 12 0 chr3 174138084 174138246 -43898912 - FRAM SINE Alu -2 164 1 3384 200 69 49 chr3 174139079 174139219 -43897939 + L1ME1 LINE L1 4648 4784 -1382 8122 108 43 7 chr3 174139219 174140473 -43896685 - HSMAR2 DNA Mariner -1 1301 3 3384 200 69 49 chr3 174140473 174141825 -43895333 + L1ME1 LINE L1 4784 6161 -5 207 0 0 0 chr3 174142854 174142877 -43894281 + (T)n Simple_repeat Simple_repeat 1 23 0 293 140 18 0 chr3 174144955 174145012 -43892146 + (TA)n Simple_repeat Simple_repeat 2 59 0 540 253 93 12 chr3 174145192 174145354 -43891804 + MIR SINE MIR 50 224 -38 640 285 155 34 chr3 174146048 174146371 -43890787 + L2 LINE L2 2938 3299 -14 516 276 26 13 chr3 174146416 174146568 -43890590 - MIR SINE MIR -81 181 28 782 52 0 0 chr3 174146585 174146681 -43890477 + L1HS LINE L1 6057 6152 -3 867 10 0 0 chr3 174146838 174146935 -43890223 + L1HS LINE L1 6057 6153 -2 191 53 0 79 chr3 174146939 174146977 -43890181 + (A)n Simple_repeat Simple_repeat 1 35 0 241 296 0 42 chr3 174147086 174147157 -43890001 - L2 LINE L2 -1 3312 3245 26 50 0 0 chr3 174149858 174149898 -43887260 + AT_rich Low_complexity Low_complexity 1 40 0 2721 242 98 81 chr3 174150662 174152841 -43884317 + L1MC5 LINE L1 5670 7903 -58 334 335 101 29 chr3 174153962 174154240 -43882918 - L1ME LINE L1 -442 5679 5382 322 415 30 0 chr3 174156618 174156818 -43880340 + L2 LINE L2 2505 2710 -604 609 294 34 23 chr3 174156820 174157082 -43880076 + L1MEc LINE L1 35 299 -6097 1052 275 78 32 chr3 174157097 174157559 -43879599 + L2 LINE L2 2831 3313 0 297 327 109 9 chr3 174157909 174158019 -43879139 + L2 LINE L2 3148 3268 -4 27 0 0 0 chr3 174158103 174158130 -43879028 + AT_rich Low_complexity Low_complexity 1 27 0 2551 146 16 25 chr3 174158138 174158278 -43878880 + L1MB8 LINE L1 5733 5873 -305 2132 121 0 14 chr3 174158278 174158575 -43878583 + AluSx SINE Alu 1 293 -19 2551 146 16 25 chr3 174158575 174158878 -43878280 + L1MB8 LINE L1 5873 6172 -6 1885 73 0 0 chr3 174161219 174161451 -43875707 - AluY SINE Alu 0 311 80 2305 76 0 21 chr3 174162140 174162430 -43874728 - AluY SINE Alu -27 284 1 205 226 16 32 chr3 174162928 174162990 -43874168 + MIR SINE MIR 104 164 -98 369 344 70 44 chr3 174163303 174163576 -43873582 - L2 LINE L2 -3 3269 2990 285 298 36 0 chr3 174164563 174164647 -43872511 + L2 LINE L2 3186 3272 0 2370 82 17 0 chr3 174165266 174165558 -43871600 + AluSx SINE Alu 2 298 -14 297 0 0 0 chr3 174165559 174165592 -43871566 + (TA)n Simple_repeat Simple_repeat 1 33 0 1638 184 7 26 chr3 174165598 174165703 -43871455 + AluJo SINE Alu 1 107 -205 4406 60 319 3 chr3 174165703 174166331 -43870827 - LTR12 LTR ERV1 0 826 1 1638 184 7 26 chr3 174166331 174166534 -43870624 + AluJo SINE Alu 107 303 -9 2451 73 0 28 chr3 174166973 174167290 -43869868 - AluY SINE Alu -3 308 1 316 150 6 45 chr3 174168519 174168601 -43868557 - L1ME LINE L1 -472 5649 5603 1261 97 117 5 chr3 174168717 174168913 -43868245 + AluSx SINE Alu 1 218 -94 239 302 0 21 chr3 174168956 174169052 -43868106 + CT-rich Low_complexity Low_complexity 3 96 0 462 186 47 29 chr3 174169603 174169944 -43867214 + CT-rich Low_complexity Low_complexity 1 347 0 316 163 31 20 chr3 174169980 174170078 -43867080 + CT-rich Low_complexity Low_complexity 1 99 0 502 213 20 28 chr3 174170091 174170411 -43866747 + C-rich Low_complexity Low_complexity 1 317 0 526 307 69 69 chr3 174170605 174170879 -43866279 + L2 LINE L2 2999 3272 0 1238 187 32 20 chr3 174171415 174171666 -43865492 + MLT1A1 LTR MaLR 112 365 0 295 321 65 12 chr3 174171681 174171849 -43865309 - L2 LINE L2 -518 2796 2620 443 169 0 0 chr3 174173232 174173303 -43863855 - AluJ/FRAM SINE Alu -14 298 228 254 344 142 12 chr3 174173775 174174106 -43863052 + L2 LINE L2 1247 1620 -1694 624 304 127 0 chr3 174174206 174174426 -43862732 + L1MC/D LINE L1 5508 5755 -2053 273 146 0 0 chr3 174174484 174174525 -43862633 - MLT2D LTR ERVL 0 414 374 201 74 0 0 chr3 174174528 174174555 -43862603 + (TC)n Simple_repeat Simple_repeat 1 27 0 225 132 0 0 chr3 174174556 174174594 -43862564 + (CA)n Simple_repeat Simple_repeat 1 38 0 1058 198 24 14 chr3 174175255 174175462 -43861696 + MER3 DNA MER1_type 1 209 0 849 302 238 31 chr3 174175648 174176435 -43860723 + L2 LINE L2 2196 3202 -70 1125 121 0 0 chr3 174176873 174177030 -43860128 - AluSg/x SINE Alu -5 307 151 250 120 20 40 chr3 174177031 174177081 -43860077 - AluSp SINE Alu -135 168 120 278 70 0 0 chr3 174177615 174177658 -43859500 + Alu SINE Alu 257 299 -1 438 36 0 0 chr3 174177685 174177741 -43859417 + (TTCC)n Simple_repeat Simple_repeat 4 59 0 1470 164 3 84 chr3 174177748 174178071 -43859087 - AluJb SINE Alu -11 301 5 2417 65 3 7 chr3 174178083 174178406 -43858752 - AluSp SINE Alu 0 313 1 287 232 65 83 chr3 174180436 174180604 -43856554 - L2 LINE L2 -1364 1950 1786 2286 69 35 0 chr3 174180604 174180893 -43856265 - AluSg SINE Alu -10 300 2 945 289 73 20 chr3 174181289 174181684 -43855474 - L2 LINE L2 -49 3264 2849 259 317 30 0 chr3 174181752 174181853 -43855305 + MLT1L LTR MaLR 398 501 -114 1104 229 81 38 chr3 174181960 174182305 -43854853 - MLT1A1 LTR MaLR -5 360 1 611 200 17 160 chr3 174182483 174182783 -43854375 - MLT1L LTR MaLR -152 463 207 283 219 0 16 chr3 174182753 174182817 -43854341 - MLT1J LTR MaLR -339 172 110 * 249 83 0 0 chr3 174182792 174182828 -43854330 - LTR67 LTR ERVL -419 138 103 * 661 240 88 40 chr3 174182862 174183256 -43853902 - MLT1J LTR MaLR -9 502 43 409 304 149 18 chr3 174183260 174183536 -43853622 - LTR16A1 LTR ERVL 0 457 146 548 304 24 0 chr3 174184551 174184719 -43852439 + L1MC4a LINE L1 5537 5708 -2100 297 311 44 0 chr3 174184720 174184810 -43852348 + L2 LINE L2 3151 3244 -28 453 241 111 20 chr3 174184872 174185071 -43852087 + L1MC4a LINE L1 5762 5978 -1830 1677 198 52 22 chr3 174185711 174186074 -43851084 - MLT1A2 LTR MaLR 0 374 1 286 258 83 99 chr3 174186448 174186820 -43850338 + MLT1K LTR MaLR 194 559 -29 530 274 164 40 chr3 174187710 174187936 -43849222 + MIR SINE MIR 9 262 0 649 224 122 56 chr3 174188992 174189188 -43847970 + MER3 DNA MER1_type 1 209 0 278 333 41 46 chr3 174189472 174189609 -43847549 + L3b LINE CR1 1125 1262 -321 2092 114 40 3 chr3 174189609 174189907 -43847251 - AluSx SINE Alu -3 309 1 278 333 41 46 chr3 174189907 174189964 -43847194 + L3b LINE CR1 1262 1318 -265 460 136 39 48 chr3 174191291 174191394 -43845764 - L1M1 LINE L1 -7442 123 22 276 214 14 29 chr3 174191884 174191954 -43845204 + MIR3 SINE MIR 15 83 -125 1611 250 19 36 chr3 174192329 174192745 -43844413 - MLT1I LTR MaLR 0 409 1 2285 142 53 11 chr3 174192799 174193173 -43843985 - MLT1B LTR MaLR 0 390 1 1821 155 17 0 chr3 174193297 174193594 -43843564 - AluJb SINE Alu -10 302 1 2327 113 0 0 chr3 174193876 174194178 -43842980 + AluSx SINE Alu 1 302 -10 872 210 33 0 chr3 174194194 174194375 -43842783 - MER5A DNA MER1_type -2 187 1 1520 181 138 9 chr3 174195074 174195394 -43841764 + MLT1A1 LTR MaLR 5 365 0 424 274 95 70 chr3 174195457 174195814 -43841344 + MLT1J LTR MaLR 121 486 -25 184 314 0 0 chr3 174195931 174195982 -43841176 - L2 LINE L2 -12 3260 3210 520 198 58 0 chr3 174195990 174196111 -43841047 - MIR SINE MIR -120 142 15 245 318 118 12 chr3 174196580 174196665 -43840493 - MIR3 SINE MIR -9 199 106 545 246 9 0 chr3 174197137 174197247 -43839911 - MER81 DNA DNA 0 114 4 884 291 174 27 chr3 174197250 174197876 -43839282 - L3 LINE CR1 -350 1227 510 493 234 41 18 chr3 174198274 174198445 -43838713 - L1ME2 LINE L1 -1 6163 5989 1621 167 41 4 chr3 174199243 174199696 -43837462 + MLT2B1 LTR ERVL 1 518 -2 277 287 187 20 chr3 174199792 174199969 -43837189 - MIR SINE MIR 0 262 56 882 184 0 24 chr3 174200312 174200480 -43836678 + AluJb SINE Alu 5 168 -144 416 161 25 0 chr3 174200583 174200664 -43836494 + MLT1J LTR MaLR 504 586 -7 366 271 60 88 chr3 174200683 174200833 -43836325 - L1M4 LINE L1 -1932 4214 4061 2346 72 3 3 chr3 174200833 174201126 -43836032 - AluSp SINE Alu -9 304 12 366 271 60 88 chr3 174201126 174201488 -43835670 - L1M4 LINE L1 -2085 4061 3716 4384 138 25 35 chr3 174201545 174202334 -43834824 - L1MC1 LINE L1 -3 6330 5550 551 337 76 13 chr3 174202600 174202995 -43834163 - L1M4 LINE L1 -2635 3511 3092 1802 149 47 14 chr3 174203006 174203302 -43833856 - AluJb SINE Alu -3 309 4 299 247 77 68 chr3 174203311 174203408 -43833750 - L1M4 LINE L1 -2985 3161 3066 7697 22 0 0 chr3 174203408 174204441 -43832717 - L1PA4 LINE L1 -2 6153 5122 299 247 77 68 chr3 174204441 174204796 -43832362 - L1M4 LINE L1 -3080 3066 2705 209 200 55 0 chr3 174205282 174205337 -43831821 + (CATATA)n Simple_repeat Simple_repeat 5 62 0 33 0 0 0 chr3 174205421 174205454 -43831704 + AT_rich Low_complexity Low_complexity 1 33 0 255 186 116 0 chr3 174207352 174207438 -43829720 - HAL1 LINE L1 -171 2336 2241 759 272 66 6 chr3 174207439 174207759 -43829399 - HAL1 LINE L1 -302 2205 1867 342 213 21 0 chr3 174207768 174207862 -43829296 - HAL1 LINE L1 -723 1784 1689 362 243 147 62 chr3 174207880 174208057 -43829101 - HAL1 LINE L1 -1399 1108 917 263 328 33 22 chr3 174208073 174208253 -43828905 - HAL1 LINE L1 -1789 718 537 512 273 143 73 chr3 174208262 174208661 -43828497 - HAL1 LINE L1 -2065 442 16 1632 161 164 6 chr3 174208661 174209003 -43828155 + MSTD LTR MaLR 1 396 0 322 333 0 44 chr3 174209308 174209454 -43827704 + MER5B DNA MER1_type 2 152 -37 547 245 60 0 chr3 174210342 174210493 -43826665 - MLT1G1 LTR MaLR -435 160 1 315 238 97 112 chr3 174210912 174211118 -43826040 + L2 LINE L2 3070 3272 0 197 255 0 0 chr3 174211363 174211410 -43825748 - MIR SINE MIR -169 93 47 237 313 161 18 chr3 174211457 174211674 -43825484 + L2 LINE L2 1538 1785 -1529 2225 132 63 34 chr3 174213600 174214281 -43822877 - MER51A LTR ERV1 0 634 1 205 331 133 40 chr3 174217005 174217328 -43819830 + L2 LINE L2 2920 3272 0 221 380 84 17 chr3 174217835 174218014 -43819144 - L3b LINE CR1 -3 1580 1390 524 164 45 18 chr3 174219079 174219189 -43817969 - AluJb SINE Alu -3 309 197 2070 103 31 3 chr3 174219601 174219893 -43817265 + AluSg SINE Alu 2 301 -9 311 322 147 0 chr3 174220012 174220155 -43817003 + MIR SINE MIR 21 184 -78 2338 83 0 7 chr3 174220986 174221287 -43815871 + AluY SINE Alu 1 299 -12 1877 105 39 11 chr3 174222537 174222822 -43814336 + AluY SINE Alu 1 293 -18 1916 121 29 0 chr3 174224304 174224606 -43812552 - AluSx SINE Alu 0 310 1 781 230 6 12 chr3 174225885 174226046 -43811112 + FRAM SINE Alu 1 157 -19 219 326 76 29 chr3 174226111 174226283 -43810875 - L2 LINE L2 -613 2701 2522 714 201 42 26 chr3 174226808 174226997 -43810161 - L2 LINE L2 -3 3310 3119 1561 175 4 22 chr3 174227004 174227273 -43809885 + AluJo SINE Alu 46 309 -3 3061 241 170 21 chr3 174227281 174228424 -43808734 - L2 LINE L2 -692 2622 1310 2175 95 0 3 chr3 174229153 174229471 -43807687 + AluY SINE Alu 1 317 0 193 268 0 0 chr3 174229563 174229604 -43807554 + MIR SINE MIR 81 121 -87 31 0 0 24 chr3 174231247 174231266 -43805892 + AT_rich Low_complexity Low_complexity 1 19 -22 198 0 0 0 chr3 174231266 174231288 -43805870 + (CA)n Simple_repeat Simple_repeat 2 23 0 31 0 0 24 chr3 174231288 174231310 -43805848 + AT_rich Low_complexity Low_complexity 19 41 0 765 100 0 0 chr3 174231339 174231439 -43805719 - AluJ/FLAM SINE Alu -212 100 1 21 0 0 0 chr3 174231446 174231467 -43805691 + AT_rich Low_complexity Low_complexity 1 21 0 2815 174 41 38 chr3 174232100 174232709 -43804449 - LTR36 LTR ERV1 0 611 1 323 320 227 5 chr3 174232970 174233164 -43803994 + MIR SINE MIR 20 256 -6 36 0 0 0 chr3 174234988 174235024 -43802134 + AT_rich Low_complexity Low_complexity 1 36 0 1161 153 40 59 chr3 174235025 174235247 -43801911 + AluJo SINE Alu 1 218 -94 33 25 0 0 chr3 174235278 174235318 -43801840 + AT_rich Low_complexity Low_complexity 1 40 0 703 89 0 0 chr3 174235758 174235848 -43801310 - AluJ/FLAM SINE Alu -211 101 12 2096 112 0 50 chr3 174236074 174236396 -43800762 - AluSx SINE Alu -6 306 1 296 328 15 8 chr3 174236615 174236749 -43800409 - HsTC2 DNA Tc2 -1116 782 648 3914 80 11 14 chr3 174236765 174236791 -43800367 - L1PA13 LINE L1 -1 6162 6137 654 198 0 0 chr3 174236791 174236907 -43800251 + FLAM_A SINE Alu 1 116 -17 3914 80 11 14 chr3 174236907 174237443 -43799715 - L1PA13 LINE L1 -26 6137 5602 499 248 157 13 chr3 174237591 174237744 -43799414 + MER5B DNA MER1_type 1 175 -3 329 302 121 20 chr3 174237922 174238071 -43799087 + MIR3 SINE MIR 31 194 -14 384 249 89 53 chr3 174238363 174238495 -43798663 + MIR SINE MIR 72 213 -49 1710 190 0 10 chr3 174238495 174238805 -43798353 + AluJb SINE Alu 1 307 -5 384 249 89 53 chr3 174238805 174238841 -43798317 + MIR SINE MIR 213 246 -16 1118 144 119 0 chr3 174241717 174241911 -43795247 - AluSq SINE Alu -12 301 85 22 35 0 0 chr3 174241947 174241976 -43795182 + AT_rich Low_complexity Low_complexity 1 29 0 376 357 16 8 chr3 174242087 174242216 -43794942 + MIR3 SINE MIR 31 160 -48 2245 94 0 10 chr3 174243717 174244005 -43793153 + AluSx SINE Alu 1 285 -27 267 106 0 0 chr3 174244012 174244059 -43793099 - L1MA7 LINE L1 -15 6276 6230 1864 143 3 30 chr3 174244179 174244479 -43792679 + AluJo SINE Alu 3 294 -18 1924 146 0 21 chr3 174244479 174244766 -43792392 + AluSx SINE Alu 25 305 -7 22 70 0 0 chr3 174245058 174245101 -43792057 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr3 174245127 174245148 -43792010 + AT_rich Low_complexity Low_complexity 1 21 0 419 126 46 29 chr3 174245170 174245344 -43791814 + (TA)n Simple_repeat Simple_repeat 1 177 0 3087 85 27 11 chr3 174247123 174247572 -43789586 - L1PA13 LINE L1 -1 6162 5707 427 125 0 0 chr3 174247999 174248071 -43789087 - L1MA10 LINE L1 -8 6326 6255 1896 138 19 32 chr3 174248434 174248745 -43788413 - AluJb SINE Alu -5 307 1 234 283 101 35 chr3 174248798 174248972 -43788186 - MIR SINE MIR -30 232 47 242 182 0 0 chr3 174250573 174250617 -43786541 - MER3 DNA MER1_type -165 44 1 871 220 11 26 chr3 174250711 174250902 -43786256 - MIR SINE MIR -30 232 45 936 140 0 0 chr3 174251174 174251317 -43785841 + L1PB4 LINE L1 6001 6143 -13 9450 110 36 38 chr3 174252104 174252473 -43784685 - Tigger1 DNA MER2_type 0 2418 2050 720 174 8 8 chr3 174252473 174252594 -43784564 - FLAM_A SINE Alu -11 122 2 9450 110 36 38 chr3 174252594 174253680 -43783478 - Tigger1 DNA MER2_type -368 2050 965 2172 125 3 13 chr3 174253680 174253984 -43783174 + AluSg SINE Alu 1 301 -9 9450 110 36 38 chr3 174253984 174254224 -43782934 - Tigger1 DNA MER2_type -1453 965 726 1698 175 25 38 chr3 174254224 174254482 -43782676 - Tigger1 DNA MER2_type -2058 360 107 2528 87 0 0 chr3 174254482 174254792 -43782366 + AluSq SINE Alu 1 310 -3 1698 175 25 38 chr3 174254792 174254898 -43782260 - Tigger1 DNA MER2_type -2311 107 1 22 80 0 0 chr3 174254909 174254959 -43782199 + AT_rich Low_complexity Low_complexity 1 50 0 1638 180 25 3 chr3 174255206 174255489 -43781669 - AluJb SINE Alu -21 291 3 33 66 0 0 chr3 174256075 174256136 -43781022 + AT_rich Low_complexity Low_complexity 1 61 0 2456 72 3 0 chr3 174256172 174256476 -43780682 - AluSg SINE Alu -5 305 1 1817 122 82 4 chr3 174257124 174257403 -43779755 + AluSx SINE Alu 1 301 -11 2252 102 30 3 chr3 174257680 174257985 -43779173 + AluSq SINE Alu 1 313 0 602 160 0 0 chr3 174258042 174258142 -43779016 - LTR65 LTR ERV1 0 669 570 1122 147 4 7 chr3 174260532 174260764 -43776394 - AluJb SINE Alu -16 296 1 2029 149 30 6 chr3 174263026 174263362 -43773796 - MER2 DNA MER2_type 0 344 1 1652 204 0 7 chr3 174263667 174263976 -43773182 - AluJb SINE Alu -5 307 1 29 0 0 0 chr3 174265191 174265220 -43771938 + AT_rich Low_complexity Low_complexity 1 29 0 1806 238 66 48 chr3 174266664 174267274 -43769884 + MLT1E2 LTR MaLR 2 622 -4 752 241 44 31 chr3 174267284 174267528 -43769630 - MIR SINE MIR -4 258 10 22 70 0 0 chr3 174268272 174268315 -43768843 + AT_rich Low_complexity Low_complexity 1 43 0 358 294 56 28 chr3 174269274 174269417 -43767741 - MIR SINE MIR -70 192 46 2297 87 0 3 chr3 174270932 174271231 -43765927 + AluSq SINE Alu 1 298 -15 2252 92 10 13 chr3 174273016 174273322 -43763836 + AluSx SINE Alu 1 305 -7 273 262 47 54 chr3 174274101 174274250 -43762908 + L1ME4a LINE L1 5568 5715 -406 3575 222 40 88 chr3 174274418 174275064 -43762094 + L1MC3 LINE L1 6675 7242 -543 2341 103 3 0 chr3 174275064 174275375 -43761783 + AluSp SINE Alu 1 312 -1 3575 222 40 88 chr3 174275375 174275888 -43761270 + L1MC3 LINE L1 7242 7778 -7 257 230 40 20 chr3 174275892 174275992 -43761166 - L1ME LINE L1 -252 5869 5768 2052 96 0 0 chr3 174276013 174276274 -43760884 - AluSg SINE Alu -10 300 40 531 120 0 0 chr3 174276274 174276349 -43760809 - AluS SINE Alu -235 75 1 373 261 140 27 chr3 174276457 174276714 -43760444 + L1ME4a LINE L1 5705 5990 -131 917 220 6 0 chr3 174277138 174277311 -43759847 + FRAM SINE Alu 1 173 -3 2060 117 17 17 chr3 174277428 174277727 -43759431 - AluSx SINE Alu -12 300 2 564 316 84 4 chr3 174279939 174280164 -43756994 - MIR SINE MIR 0 262 20 2546 62 3 0 chr3 174280467 174280776 -43756382 - AluY SINE Alu -1 310 1 368 155 25 230 chr3 174281142 174281303 -43755855 - L2 LINE L2 0 3313 3186 711 215 21 16 chr3 174281589 174281775 -43755383 + MER5A DNA MER1_type 1 187 -2 194 390 0 0 chr3 174281955 174282037 -43755121 + L2 LINE L2 3191 3272 0 28 29 0 0 chr3 174282316 174282351 -43754807 + AT_rich Low_complexity Low_complexity 1 35 0 2391 79 0 7 chr3 174282815 174283120 -43754038 - AluSg SINE Alu -7 303 1 455 331 75 81 chr3 174283209 174283768 -43753390 + HAL1 LINE L1 809 1364 -1143 192 254 79 0 chr3 174284324 174284387 -43752771 - MIR SINE MIR -75 187 120 21 36 0 0 chr3 174284442 174284470 -43752688 + AT_rich Low_complexity Low_complexity 1 28 0 796 182 0 0 chr3 174285433 174285565 -43751593 + FLAM_C SINE Alu 2 133 0 27 49 0 0 chr3 174286090 174286131 -43751027 + AT_rich Low_complexity Low_complexity 1 41 0 935 264 118 6 chr3 174287480 174287713 -43749445 + L2 LINE L2 2290 2572 -742 2426 50 20 10 chr3 174287713 174288015 -43749143 + AluY SINE Alu 1 305 -6 935 264 118 6 chr3 174288015 174288111 -43749047 + L2 LINE L2 2572 2656 -658 260 210 99 25 chr3 174288214 174288295 -43748863 - LTR43 LTR ERV1 -144 458 372 1582 120 103 50 chr3 174288295 174288809 -43748349 + MER51A LTR ERV1 1 634 0 12033 100 24 7 chr3 174288909 174290120 -43747038 + Charlie3 DNA MER1_type 1 1254 -1452 2362 100 0 0 chr3 174290120 174290421 -43746737 + AluSg SINE Alu 1 301 -9 12033 100 24 7 chr3 174290421 174290977 -43746181 + Charlie3 DNA MER1_type 1254 1799 -907 40845 33 22 1 chr3 174290977 174296992 -43740166 - L1PA2 LINE L1 -3 6152 13 2977 88 0 0 chr3 174296992 174297388 -43739770 + Charlie3 DNA MER1_type 1780 2175 -535 3396 129 81 28 chr3 174297397 174298350 -43738808 + MER11A LTR ERVK 20 1266 0 * 3572 96 12 36 chr3 174298350 174298902 -43738256 + Charlie3 DNA MER1_type 2168 2706 -4 293 188 14 0 chr3 174298912 174298981 -43738177 - LTR43 LTR ERV1 -340 262 193 295 208 208 33 chr3 174299225 174299345 -43737813 + L2 LINE L2 2606 2746 -568 2044 112 3 0 chr3 174299422 174299725 -43737433 + MLT2A2 LTR ERVL 1 304 -149 4802 106 43 27 chr3 174299735 174300502 -43736656 + MER4E LTR ERV1 1 779 0 450 153 246 8 chr3 174300520 174300638 -43736520 - MER4C LTR ERV1 -21 444 299 1109 150 137 48 chr3 174300698 174301012 -43736146 - MER4A LTR ERV1 -322 342 1 1182 134 25 15 chr3 174301013 174301255 -43735903 + MLT2A2 LTR ERVL 293 453 0 200 194 15 90 chr3 174301260 174301327 -43735831 + L2 LINE L2 2942 3003 -310 2247 114 3 0 chr3 174301327 174301626 -43735532 - AluSg SINE Alu -10 300 1 497 244 181 24 chr3 174301627 174301832 -43735326 + L2 LINE L2 3077 3313 0 2681 101 0 8 chr3 174301999 174302365 -43734793 - THE1B LTR MaLR -1 363 1 29 0 0 0 chr3 174302472 174302501 -43734657 + AT_rich Low_complexity Low_complexity 1 29 0 483 180 0 20 chr3 174302773 174302873 -43734285 + MER4A LTR ERV1 1 98 -566 * 1634 131 166 75 chr3 174302869 174303243 -43733915 + MER4A LTR ERV1 257 664 0 3461 194 40 55 chr3 174303362 174304299 -43732859 + HERVI LTR ERV1 78 999 -6786 184 87 87 43 chr3 174304906 174304998 -43732160 + (TTATA)n Simple_repeat Simple_repeat 5 100 0 1765 210 70 42 chr3 174305054 174305626 -43731532 + HERVI LTR ERV1 1219 4639 -3146 452 255 29 18 chr3 174305645 174305800 -43731358 + HERVI LTR ERV1 3747 4914 -2750 304 215 11 75 chr3 174305768 174305861 -43731297 + HERVI LTR ERV1 5331 5417 -2368 * 1482 239 137 16 chr3 174305878 174306322 -43730836 + HERVI LTR ERV1 2662 3159 -3737 5795 228 15 6 chr3 174306700 174308031 -43729127 + HERVI LTR ERV1 6441 7783 -2 953 201 91 100 chr3 174308035 174308536 -43728622 + LTR10B LTR ERV1 1 542 -5 2565 96 134 19 chr3 174308557 174309028 -43728130 + LTR10B-int LTR ERV1 39 563 -6035 293 128 0 105 chr3 174309099 174309185 -43727973 + LTR10B-int LTR ERV1 750 826 -5772 1040 225 84 8 chr3 174309254 174309516 -43727642 + LTR10B-int LTR ERV1 1851 2132 -4199 1718 122 7 18 chr3 174309602 174309881 -43727277 + MER4B-int LTR ERV1 196 471 -6287 3205 79 7 0 chr3 174309882 174310311 -43726847 + LTR3 LTR ERVK 1 432 0 2153 119 36 48 chr3 174310312 174310375 -43726783 + MER4B-int LTR ERV1 468 530 -6228 1834 122 0 47 chr3 174310375 174310654 -43726504 + AluSg SINE Alu 1 266 -44 2153 119 36 48 chr3 174310654 174310836 -43726322 + MER4B-int LTR ERV1 530 713 -6045 2190 112 3 0 chr3 174310836 174311146 -43726012 + AluSp SINE Alu 1 313 0 2153 119 36 48 chr3 174311146 174311189 -43725969 + MER4B-int LTR ERV1 713 755 -6003 2078 110 4 0 chr3 174311189 174311461 -43725697 + AluSp SINE Alu 1 273 -40 2153 119 36 48 chr3 174311461 174311804 -43725354 + MER4B-int LTR ERV1 755 1149 -5609 423 0 0 0 chr3 174311804 174311851 -43725307 + (TG)n Simple_repeat Simple_repeat 2 48 0 4296 80 44 11 chr3 174311869 174312579 -43724579 + MER4B-int LTR ERV1 1764 2496 -4102 1226 160 76 0 chr3 174312580 174312817 -43724341 - LTR8 LTR ERV1 -436 255 1 3086 138 74 56 chr3 174312817 174313489 -43723669 + MER4B-int LTR ERV1 2737 3429 -3169 1940 139 0 16 chr3 174313489 174313798 -43723360 - AluSg SINE Alu -6 304 1 3086 138 74 56 chr3 174313798 174313981 -43723177 + MER4B-int LTR ERV1 3429 3607 -2991 266 57 0 0 chr3 174313981 174314016 -43723142 - THE1C LTR MaLR -336 39 5 607 31 0 82 chr3 174314020 174314117 -43723041 - MER4-int LTR ERV1 -2000 4598 4510 9899 185 15 16 chr3 174314135 174316597 -43720561 + L1M2 LINE L1 3056 5517 -743 1652 143 51 38 chr3 174316732 174317025 -43720133 + AluJb SINE Alu 1 297 -15 388 224 97 99 chr3 174317025 174317086 -43720072 + L1MEd LINE L1 1171 1231 -5403 2135 113 3 0 chr3 174317086 174317407 -43719751 + AluSq SINE Alu 1 322 0 388 224 97 99 chr3 174317407 174317787 -43719371 + L1MEd LINE L1 1231 1612 -5022 1291 201 37 37 chr3 174317787 174318141 -43719017 + MLT1A1 LTR MaLR 1 354 -11 439 293 66 23 chr3 174318150 174318336 -43718822 + L1MEd LINE L1 1529 1691 -4851 1951 108 90 0 chr3 174318390 174318668 -43718490 + AluSp SINE Alu 1 303 -10 329 358 25 20 chr3 174318676 174318880 -43718278 + HAL1 LINE L1 1442 1646 -861 4293 29 0 4 chr3 174318923 174319437 -43717721 - L1PA4 LINE L1 -4 6151 5640 1181 158 5 16 chr3 174319469 174319659 -43717499 + AluJo SINE Alu 1 188 -124 1795 110 51 57 chr3 174319816 174319885 -43717273 + L1MA6 LINE L1 5904 5972 -328 2108 96 17 0 chr3 174319885 174320176 -43716982 + AluSx SINE Alu 5 300 -12 1795 110 51 57 chr3 174320176 174320460 -43716698 + L1MA6 LINE L1 5972 6255 -45 843 305 68 14 chr3 174320896 174321335 -43715823 - LTR16B LTR ERVL 0 464 2 374 261 68 66 chr3 174322097 174322579 -43714579 + L1ME4a LINE L1 5352 5839 -282 498 243 158 0 chr3 174323070 174323222 -43713936 - L1MDa LINE L1 -6349 191 16 398 278 96 11 chr3 174323222 174323492 -43713666 - L1M4 LINE L1 -3644 2502 2210 302 54 357 0 chr3 174323946 174324002 -43713156 - AluY SINE Alu -8 293 218 22 35 0 0 chr3 174324142 174324171 -43712987 + AT_rich Low_complexity Low_complexity 1 29 0 2166 122 10 0 chr3 174324272 174324575 -43712583 - AluSx SINE Alu -5 307 2 25 31 0 0 chr3 174325124 174325156 -43712002 + AT_rich Low_complexity Low_complexity 1 32 0 2267 99 3 25 chr3 174326573 174326887 -43710271 + AluSc SINE Alu 1 307 -2 645 186 109 78 chr3 174326986 174327179 -43709979 - MER3 DNA MER1_type -10 199 1 2130 134 0 3 chr3 174327673 174327971 -43709187 - AluSx SINE Alu -13 299 3 2118 78 0 29 chr3 174329413 174329694 -43707464 + AluY SINE Alu 1 273 -38 2237 78 0 14 chr3 174329884 174330205 -43706953 + AluSg1 SINE Alu 1 317 0 246 245 0 0 chr3 174330569 174330622 -43706536 - L2 LINE L2 -5 3308 3256 206 114 0 29 chr3 174330641 174330676 -43706482 - L2 LINE L2 -245 3068 3035 2415 103 0 0 chr3 174330812 174331123 -43706035 + AluSx SINE Alu 1 311 -1 280 236 0 123 chr3 174331303 174331351 -43705807 + MIR3 SINE MIR 113 143 -65 465 242 113 22 chr3 174331351 174331582 -43705576 - MER112 DNA MER1_type 0 256 5 280 236 0 123 chr3 174331582 174331639 -43705519 + MIR3 SINE MIR 143 205 -3 2241 151 52 10 chr3 174332434 174332843 -43704315 - MSTB LTR MaLR 0 414 1 1903 151 13 7 chr3 174334513 174334811 -43702347 + AluJb SINE Alu 2 301 -11 2297 148 122 28 chr3 174334919 174335380 -43701778 - MLT1D LTR MaLR -1 504 1 219 293 114 50 chr3 174335604 174335744 -43701414 + L2 LINE L2 3123 3271 -1 2607 50 0 0 chr3 174336736 174337035 -43700123 - AluY SINE Alu -12 299 1 25 0 0 0 chr3 174337167 174337192 -43699966 + AT_rich Low_complexity Low_complexity 1 25 0 2237 87 24 7 chr3 174337529 174337827 -43699331 - AluSp SINE Alu -10 303 1 848 191 39 6 chr3 174338163 174338341 -43698817 + MER5A DNA MER1_type 6 189 0 835 198 16 58 chr3 174338644 174338887 -43698271 + MLT1C LTR MaLR 1 233 -234 704 104 9 9 chr3 174338890 174338996 -43698162 + FRAM SINE Alu 54 159 -17 1018 183 29 12 chr3 174339001 174339241 -43697917 + MLT1C LTR MaLR 224 467 0 225 0 0 0 chr3 174339337 174339362 -43697796 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 366 23 0 0 chr3 174339361 174339404 -43697754 + (CA)n Simple_repeat Simple_repeat 1 43 0 407 280 55 33 chr3 174339504 174339686 -43697472 + MIR SINE MIR 61 246 -16 2392 96 0 0 chr3 174340065 174340367 -43696791 + AluSx SINE Alu 1 302 -10 361 307 134 56 chr3 174340929 174341235 -43695923 - L1ME LINE L1 -462 5700 5371 239 139 0 0 chr3 174341239 174341275 -43695883 + MIR SINE MIR 193 228 -34 2336 98 0 0 chr3 174341359 174341655 -43695503 + AluY SINE Alu 1 296 -15 215 295 179 52 chr3 174342057 174342403 -43694755 + L2 LINE L2 2856 3245 -27 1916 124 4 4 chr3 174342755 174343029 -43694129 + AluSx SINE Alu 3 276 -36 2017 91 3 46 chr3 174343171 174343320 -43693838 - AluSg SINE Alu -37 273 140 2392 87 0 6 chr3 174343320 174343632 -43693526 - AluSg SINE Alu 0 310 1 2017 91 3 46 chr3 174343632 174343767 -43693391 - AluSg SINE Alu -170 140 1 68 69 0 0 chr3 174343864 174343995 -43693163 + AT_rich Low_complexity Low_complexity 1 131 0 471 266 146 33 chr3 174344167 174344441 -43692717 + L1ME4a LINE L1 5761 6065 -56 22 56 0 0 chr3 174344699 174344735 -43692423 + AT_rich Low_complexity Low_complexity 1 36 0 32 26 0 0 chr3 174344910 174344949 -43692209 + AT_rich Low_complexity Low_complexity 1 39 0 290 284 68 21 chr3 174345506 174345696 -43691462 + L1ME LINE L1 5443 5641 -529 225 293 69 0 chr3 174345747 174345863 -43691295 + L1ME LINE L1 5739 5862 -300 237 320 64 0 chr3 174345871 174346043 -43691115 + L1ME3A LINE L1 5774 5956 -214 245 295 9 9 chr3 174346235 174346340 -43690818 + L1MC4 LINE L1 7929 8033 -9 390 235 84 70 chr3 174347703 174347916 -43689242 - MER112 DNA MER1_type -43 217 2 1023 210 14 14 chr3 174348701 174348920 -43688238 + MER20 DNA MER1_type 1 219 0 685 285 119 23 chr3 174349594 174349948 -43687210 + L2 LINE L2 2926 3313 0 446 365 62 27 chr3 174349956 174350359 -43686799 + L2 LINE L2 2243 2659 -655 299 257 131 55 chr3 174350463 174350646 -43686512 + L2 LINE L2 2816 3012 -260 1761 167 89 3 chr3 174352666 174353002 -43684156 + MER47A DNA MER2_type 2 366 0 2304 115 0 0 chr3 174353462 174353766 -43683392 + AluSx SINE Alu 1 304 -8 1348 234 135 5 chr3 174354035 174354835 -43682323 - L1ME1 LINE L1 -6 6160 5186 1947 148 127 0 chr3 174354893 174355264 -43681894 + MLT1D LTR MaLR 88 505 0 26 0 0 0 chr3 174355266 174355292 -43681866 + AT_rich Low_complexity Low_complexity 1 26 0 308 345 112 0 chr3 174355295 174355411 -43681747 + L2 LINE L2 3134 3262 -10 2253 127 0 0 chr3 174355412 174355719 -43681439 + AluSg SINE Alu 1 307 -3 198 0 0 0 chr3 174355723 174355745 -43681413 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1918 54 8 17 chr3 174356287 174356526 -43680632 - AluY SINE Alu 0 311 75 1085 215 120 68 chr3 174356548 174356908 -43680250 - MLT1F1 LTR MaLR 0 567 171 2194 95 0 3 chr3 174356908 174357203 -43679955 - AluY SINE Alu -17 294 1 1085 215 120 68 chr3 174357203 174357350 -43679808 - MLT1F1 LTR MaLR -396 171 33 374 299 22 22 chr3 174357697 174357831 -43679327 - MER5A DNA MER1_type -8 181 48 331 237 40 0 chr3 174357890 174357966 -43679192 - L2 LINE L2 -2 3311 3233 402 283 79 0 chr3 174358457 174358634 -43678524 - HAL1 LINE L1 -875 1632 1442 24 0 0 0 chr3 174358638 174358662 -43678496 + AT_rich Low_complexity Low_complexity 1 24 0 2308 110 0 7 chr3 174358734 174359044 -43678114 - AluSq SINE Alu -5 308 1 2576 132 7 38 chr3 174359399 174359845 -43677313 - MSTB1 LTR MaLR 0 432 1 1388 168 4 4 chr3 174359856 174360082 -43677076 - AluJo SINE Alu 0 312 87 651 125 0 0 chr3 174360082 174360178 -43676980 - MER30B DNA MER1_type -94 96 1 378 0 0 0 chr3 174360223 174360265 -43676893 + (CA)n Simple_repeat Simple_repeat 2 43 0 1827 248 91 19 chr3 174360265 174361010 -43676148 - L1ME LINE L1 -5241 829 31 24 32 0 0 chr3 174361171 174361202 -43675956 + AT_rich Low_complexity Low_complexity 1 31 0 619 149 127 22 chr3 174361499 174361633 -43675525 - MLT1B LTR MaLR -50 340 193 7967 149 132 13 chr3 174361905 174362728 -43674430 - L1MCa LINE L1 -4421 2005 1281 2291 93 7 7 chr3 174362728 174363028 -43674130 - AluSx SINE Alu -12 300 1 7967 149 132 13 chr3 174363028 174363961 -43673197 - L1MCa LINE L1 -5145 1281 41 1558 155 58 29 chr3 174363972 174364250 -43672908 - AluJb SINE Alu -26 286 1 28 0 0 0 chr3 174364407 174364435 -43672723 + AT_rich Low_complexity Low_complexity 1 28 0 1269 69 0 0 chr3 174364623 174364783 -43672375 - L1PA10 LINE L1 -10 6158 5999 21 0 0 0 chr3 174365658 174365679 -43671479 + AT_rich Low_complexity Low_complexity 1 21 0 294 125 0 0 chr3 174366386 174366434 -43670724 + (TG)n Simple_repeat Simple_repeat 2 49 0 198 0 0 0 chr3 174366521 174366543 -43670615 + (CA)n Simple_repeat Simple_repeat 2 23 0 23 33 0 0 chr3 174367325 174367355 -43669803 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr3 174367757 174367795 -43669363 + AT_rich Low_complexity Low_complexity 1 38 0 2269 97 3 3 chr3 174367949 174368248 -43668910 + AluSg SINE Alu 1 299 -11 1915 113 0 70 chr3 174370214 174370541 -43666617 - AluSq SINE Alu -9 304 1 21 57 0 0 chr3 174370692 174370727 -43666431 + AT_rich Low_complexity Low_complexity 1 35 0 1764 157 21 0 chr3 174370828 174371115 -43666043 + AluJb SINE Alu 1 293 -19 242 218 0 96 chr3 174372158 174372314 -43664844 + C-rich Low_complexity Low_complexity 2 142 0 214 256 0 77 chr3 174372662 174372830 -43664328 + C-rich Low_complexity Low_complexity 2 156 0 376 318 0 19 chr3 174372878 174373276 -43663882 + C-rich Low_complexity Low_complexity 1 390 0 219 254 32 111 chr3 174373952 174374078 -43663080 + MIR3 SINE MIR 85 200 -8 630 248 88 52 chr3 174374246 174374653 -43662505 - MER113 DNA MER1_type? -98 423 2 803 255 41 10 chr3 174375661 174375857 -43661301 - MIR SINE MIR -1 261 60 198 271 42 62 chr3 174375918 174376014 -43661144 + L3 LINE CR1 726 819 -758 876 257 128 16 chr3 174376027 174376346 -43660812 - L2 LINE L2 -4 3309 2955 342 338 58 0 chr3 174376463 174376617 -43660541 - MIR SINE MIR -2 260 98 393 222 176 9 chr3 174376953 174377061 -43660097 - L2 LINE L2 -1 3312 3187 1705 228 95 19 chr3 174377289 174377824 -43659334 + MER119 DNA MER1_type 8 583 0 545 235 123 12 chr3 174378054 174378224 -43658934 - MER91B DNA MER1_type -1 189 1 2256 57 33 10 chr3 174379152 174379451 -43657707 - AluY SINE Alu -5 306 1 2855 133 56 2 chr3 174379463 174379931 -43657227 + L1PA15 LINE L1 5668 6160 -5 2032 112 3 10 chr3 174380008 174380303 -43656855 + AluSg SINE Alu 1 293 -17 2691 121 88 44 chr3 174380306 174380984 -43656174 - MER4-int LTR ERV1 -3154 3444 2737 1226 160 76 0 chr3 174380984 174381221 -43655937 + LTR8 LTR ERV1 1 255 -436 3178 87 49 14 chr3 174381222 174381776 -43655382 - MER4-int LTR ERV1 -4102 2496 1924 803 255 41 10 chr3 174382151 174382347 -43654811 - MIR SINE MIR -1 261 60 198 271 42 62 chr3 174382408 174382504 -43654654 + L3 LINE CR1 726 819 -758 876 257 128 16 chr3 174382517 174382836 -43654322 - L2 LINE L2 -4 3309 2955 329 344 58 0 chr3 174382953 174383107 -43654051 - MIR SINE MIR -2 260 98 393 222 176 9 chr3 174383443 174383551 -43653607 - L2 LINE L2 -1 3312 3187 1603 220 74 9 chr3 174383855 174384314 -43652844 + MER119 DNA MER1_type 95 583 0 545 235 123 12 chr3 174384542 174384712 -43652446 - MER91B DNA MER1_type -1 189 1 2269 53 33 10 chr3 174385641 174385940 -43651218 - AluY SINE Alu -5 306 1 2820 138 55 2 chr3 174385952 174386424 -43650734 + L1PA15 LINE L1 5668 6164 -1 2331 94 0 10 chr3 174386497 174386806 -43650352 + AluSg SINE Alu 1 306 -4 259 279 82 41 chr3 174386846 174386968 -43650190 - MIR SINE MIR -66 196 70 774 235 30 23 chr3 174387395 174387789 -43649369 - L1ME3 LINE L1 -1 6161 5689 1806 93 70 0 chr3 174388665 174388935 -43648223 - L1PA11 LINE L1 0 6174 5886 477 281 22 7 chr3 174388949 174389084 -43648074 - MIR SINE MIR -113 149 13 2089 109 3 18 chr3 174389283 174389412 -43647746 + AluSp SINE Alu 2 131 -187 242 28 0 28 chr3 174389412 174389448 -43647710 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2089 109 3 18 chr3 174389448 174389639 -43647519 + AluSp SINE Alu 131 318 0 216 0 0 0 chr3 174389643 174389667 -43647491 + (TAA)n Simple_repeat Simple_repeat 1 24 0 688 270 17 17 chr3 174389667 174389845 -43647313 - MIR SINE MIR -8 254 77 254 274 162 0 chr3 174389994 174390111 -43647047 - Charlie8 DNA MER1_type -2278 139 4 1526 200 71 13 chr3 174390847 174391277 -43645881 - MLT1C LTR MaLR -2 465 8 1293 154 48 48 chr3 174391474 174391766 -43645392 - THE1C LTR MaLR 0 375 84 1993 122 6 0 chr3 174391768 174392080 -43645078 - THE1C-int LTR MaLR -1262 318 5 255 116 0 23 chr3 174392084 174392127 -43645031 - THE1C LTR MaLR 0 428 387 * 1091 179 55 51 chr3 174392124 174392398 -43644760 - THE1C LTR MaLR -100 275 1 26 0 0 0 chr3 174392527 174392553 -43644605 + AT_rich Low_complexity Low_complexity 1 26 0 26 30 0 0 chr3 174392870 174392903 -43644255 + AT_rich Low_complexity Low_complexity 1 33 0 1045 251 117 81 chr3 174393525 174393864 -43643294 - MLT1G LTR MaLR 0 590 265 2365 123 11 16 chr3 174393864 174394230 -43642928 - THE1B LTR MaLR 0 364 1 11456 87 13 18 chr3 174394230 174395818 -43641340 - THE1B-int LTR MaLR 0 1580 1 1045 251 117 81 chr3 174395818 174396035 -43641123 - MLT1G LTR MaLR -324 266 13 22 0 0 0 chr3 174397208 174397230 -43639928 + AT_rich Low_complexity Low_complexity 1 22 0 521 230 152 0 chr3 174397276 174397441 -43639717 + MLT1J LTR MaLR 273 462 -49 984 261 162 16 chr3 174397520 174397753 -43639405 - LTR33 LTR ERVL -2 519 321 2072 147 0 0 chr3 174397753 174398053 -43639105 + AluSx SINE Alu 1 300 -12 984 261 162 16 chr3 174398053 174398252 -43638906 - LTR33 LTR ERVL -200 321 24 745 94 0 0 chr3 174398309 174398415 -43638743 - AluSp/q SINE Alu -2 311 206 1812 130 0 4 chr3 174399240 174399502 -43637656 - AluSx SINE Alu -13 299 39 840 289 77 4 chr3 174399513 174399996 -43637162 - L1MEc LINE L1 -3639 2576 2103 2220 135 0 0 chr3 174400497 174400809 -43636349 - AluSx SINE Alu 0 312 1 2380 98 0 0 chr3 174401056 174401361 -43635797 - AluY SINE Alu -6 305 1 348 152 0 0 chr3 174401526 174401592 -43635566 - L1MA4 LINE L1 -14 6286 6221 27 29 0 0 chr3 174401600 174401634 -43635524 + AT_rich Low_complexity Low_complexity 1 34 0 1104 283 55 20 chr3 174401650 174402050 -43635108 - MLT1L LTR MaLR 0 615 202 488 322 113 7 chr3 174402207 174402490 -43634668 + L2 LINE L2 2265 2577 -737 22 35 0 0 chr3 174403265 174403294 -43633864 + AT_rich Low_complexity Low_complexity 1 29 0 788 125 75 38 chr3 174403346 174403506 -43633652 - L1MD2 LINE L1 -336 6023 5858 3179 153 18 0 chr3 174404186 174404729 -43632429 - MER68 LTR ERV1 -9 553 1 1652 190 0 4 chr3 174404838 174405106 -43632052 - AluSx SINE Alu -45 267 1 234 203 152 0 chr3 174405253 174405332 -43631826 + Charlie7 DNA MER1_type 585 675 -1937 230 172 21 161 chr3 174405370 174405556 -43631602 + Charlie7 DNA MER1_type 2422 2581 -31 637 245 41 7 chr3 174405578 174405725 -43631433 - MIR3 SINE MIR -10 198 47 1567 225 54 17 chr3 174406521 174407058 -43630100 + L1ME1 LINE L1 4620 5176 -970 2292 235 41 22 chr3 174407096 174407903 -43629255 + L1M4 LINE L1 2493 3314 -2832 1589 167 50 161 chr3 174407903 174408278 -43628880 + L1ME1 LINE L1 5393 5665 -501 1880 198 19 3 chr3 174408278 174408637 -43628521 + MLT1A1 LTR MaLR 1 365 0 1589 167 50 161 chr3 174408637 174408919 -43628239 + L1ME1 LINE L1 5665 5977 -189 34 42 0 0 chr3 174408958 174409006 -43628152 + AT_rich Low_complexity Low_complexity 1 48 0 30 45 0 0 chr3 174409879 174409923 -43627235 + AT_rich Low_complexity Low_complexity 1 44 0 860 251 77 65 chr3 174410952 174411010 -43626148 + L1MC4a LINE L1 5462 5518 -2290 1950 159 7 3 chr3 174411010 174411312 -43625846 - AluJb SINE Alu -9 303 1 860 251 77 65 chr3 174411312 174411656 -43625502 + L1MC4a LINE L1 5518 5869 -1939 504 250 0 49 chr3 174411841 174412025 -43625133 + L1MC4a LINE L1 5697 5871 -1937 21 0 0 0 chr3 174412619 174412640 -43624518 + AT_rich Low_complexity Low_complexity 1 21 0 566 160 0 10 chr3 174412803 174412903 -43624255 - LTR41 LTR ERVL -601 172 74 2020 134 0 10 chr3 174413076 174413389 -43623769 - AluSq SINE Alu 0 313 1 253 282 13 0 chr3 174413558 174413636 -43623522 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 4043 149 63 4 chr3 174414108 174414834 -43622324 + Tigger7 DNA MER2_type 2 770 -1717 1956 132 33 16 chr3 174414834 174415198 -43621960 + Tigger7 DNA MER2_type 2218 2587 0 1126 186 0 48 chr3 174415264 174415516 -43621642 - L1PB4 LINE L1 -7 6149 5910 296 309 114 47 chr3 174415864 174416013 -43621145 + L2 LINE L2 2931 3089 -183 196 339 46 0 chr3 174416530 174416595 -43620563 - L2 LINE L2 -18 3254 3187 2510 196 108 83 chr3 174416621 174416877 -43620281 - L1MC4 LINE L1 -13 8029 7781 2010 83 14 14 chr3 174416877 174417154 -43620004 - AluSp SINE Alu -36 277 1 2510 196 108 83 chr3 174417154 174417832 -43619326 - L1MC4 LINE L1 -261 7781 7072 844 309 81 20 chr3 174417841 174418926 -43618232 + L1M4 LINE L1 4080 5224 -922 427 256 37 18 chr3 174418981 174419145 -43618013 + L1MCc LINE L1 30 196 -6227 1685 178 45 0 chr3 174419636 174419928 -43617230 - AluJb SINE Alu -7 305 1 308 323 50 0 chr3 174420002 174420101 -43617057 - L2 LINE L2 -612 2702 2599 376 293 91 52 chr3 174420208 174420440 -43616718 + L1M4 LINE L1 5270 5510 -664 777 301 79 41 chr3 174420686 174421102 -43616056 - L2 LINE L2 -668 2646 2215 833 123 84 159 chr3 174421113 174421246 -43615912 - MER33 DNA MER1_type -2272 313 172 2406 62 0 7 chr3 174421246 174421537 -43615621 - AluSc SINE Alu -20 289 1 833 123 84 159 chr3 174421537 174421737 -43615421 - MER33 DNA MER1_type -2413 172 5 574 281 214 14 chr3 174421742 174422102 -43615056 - L2 LINE L2 -1097 2217 1786 287 323 61 0 chr3 174422886 174422985 -43614173 + L2 LINE L2 3136 3240 -32 1071 174 0 28 chr3 174424036 174424254 -43612904 - AluJb SINE Alu -11 301 90 352 317 118 27 chr3 174427063 174427249 -43609909 + MIR SINE MIR 31 233 -29 602 317 117 49 chr3 174427412 174427857 -43609301 + L3 LINE CR1 1101 1575 -2 219 233 0 0 chr3 174428328 174428371 -43608787 + CT-rich Low_complexity Low_complexity 1 43 0 1900 211 139 0 chr3 174429953 174430436 -43606722 - MLT1G LTR MaLR -7 583 34 679 363 96 22 chr3 174430848 174431349 -43605809 - L3 LINE CR1 -7 1570 1033 1009 218 30 5 chr3 174431367 174431564 -43605594 - AluJb SINE Alu -15 297 96 21 0 0 0 chr3 174431645 174431666 -43605492 + AT_rich Low_complexity Low_complexity 1 21 0 348 321 78 42 chr3 174431828 174432186 -43604972 - L1ME LINE L1 -357 5764 5394 403 365 65 6 chr3 174432188 174432358 -43604800 - L3 LINE CR1 -1078 499 320 1501 288 36 47 chr3 174432460 174433072 -43604086 - L2 LINE L2 -781 2533 1929 22 88 0 0 chr3 174433275 174433332 -43603826 + AT_rich Low_complexity Low_complexity 1 57 0 183 200 50 0 chr3 174433332 174433372 -43603786 + MIR SINE MIR 215 256 -6 * 231 178 44 0 chr3 174433339 174433384 -43603774 + L2 LINE L2 3226 3272 0 1274 240 141 23 chr3 174433878 174434476 -43602682 + L2 LINE L2 2531 3242 -71 2271 123 0 0 chr3 174434476 174434785 -43602373 - AluSg SINE Alu -1 309 1 1274 240 141 23 chr3 174434785 174434867 -43602291 + L2 LINE L2 3242 3313 0 2386 88 0 0 chr3 174435654 174435960 -43601198 - AluSx SINE Alu -6 306 1 7617 26 6 0 chr3 174436230 174437661 -43599497 - L1PA3 LINE L1 -5 6150 4716 6146 29 0 0 chr3 174437661 174438416 -43598742 + L1PA3 LINE L1 3980 4734 -1412 1778 154 44 51 chr3 174438790 174439199 -43597959 - L1MA6 LINE L1 -4 6296 5891 371 319 8 0 chr3 174439400 174439519 -43597639 - MIR3 SINE MIR -15 193 74 2303 127 16 24 chr3 174441106 174441484 -43595674 - THE1C LTR MaLR 0 375 1 25 51 0 0 chr3 174442849 174442888 -43594270 + AT_rich Low_complexity Low_complexity 1 39 0 244 213 42 2 chr3 174443404 174443485 -43593673 - L1MC/D LINE L1 -724 5518 5436 1337 223 53 3 chr3 174445719 174446002 -43591156 - AluJo SINE Alu -3 309 13 22 0 0 0 chr3 174446451 174446473 -43590685 + AT_rich Low_complexity Low_complexity 1 22 0 253 242 0 0 chr3 174446633 174446695 -43590463 - Charlie7 DNA MER1_type -2521 91 30 1781 163 44 3 chr3 174447230 174447524 -43589634 - AluJo SINE Alu -3 309 4 1873 142 24 10 chr3 174447990 174448285 -43588873 - AluJb SINE Alu -13 299 1 690 62 0 0 chr3 174448451 174448547 -43588611 + (GA)n Simple_repeat Simple_repeat 1 96 0 1675 146 62 49 chr3 174450074 174450444 -43586714 + THE1C LTR MaLR 1 375 0 533 296 54 109 chr3 174450578 174451038 -43586120 + L2 LINE L2 2832 3266 -6 795 254 18 71 chr3 174451051 174451390 -43585768 + L1ME4a LINE L1 5547 5867 -254 2892 10 0 0 chr3 174453205 174453514 -43583644 + AluYa5 SINE Alu 1 309 -2 308 229 0 0 chr3 174453802 174453872 -43583286 + MER104 DNA Tc2 26 95 -85 491 301 194 45 chr3 174454408 174455042 -43582116 - L2 LINE L2 -562 2752 1954 2377 74 0 0 chr3 174455042 174455355 -43581803 + AluSq SINE Alu 1 313 0 491 301 194 45 chr3 174455355 174455582 -43581576 - L2 LINE L2 -1360 1954 1762 224 324 213 13 chr3 174456214 174456439 -43580719 - L2 LINE L2 0 3272 3003 2426 66 14 0 chr3 174459393 174459682 -43577476 - AluSq SINE Alu -20 293 1 506 254 25 80 chr3 174460131 174460332 -43576826 + MIR SINE MIR 18 207 -55 790 291 58 10 chr3 174460376 174460671 -43576487 - L2 LINE L2 0 3313 3005 533 338 89 48 chr3 174462891 174463308 -43573850 - L2 LINE L2 0 3272 2839 3016 161 16 4 chr3 174463313 174463815 -43573343 + MLT2B3 LTR ERVL 1 508 -46 353 203 51 0 chr3 174464437 174464516 -43572642 - MIR SINE MIR -70 192 110 195 252 83 58 chr3 174464617 174464744 -43572414 + MIR SINE MIR 52 145 -63 614 189 104 99 chr3 174464950 174465103 -43572055 + MLT1B LTR MaLR 3 154 -220 2101 109 0 0 chr3 174465103 174465386 -43571772 + AluSx SINE Alu 1 283 -29 245 75 25 0 chr3 174465391 174465431 -43571727 + (CAA)n Simple_repeat Simple_repeat 2 42 0 614 189 104 99 chr3 174465431 174465472 -43571686 + MLT1B LTR MaLR 157 204 -170 337 136 68 0 chr3 174466119 174466178 -43570980 - MIR SINE MIR -99 163 101 26 50 0 0 chr3 174466413 174466453 -43570705 + AT_rich Low_complexity Low_complexity 1 40 0 528 113 125 0 chr3 174466472 174466552 -43570606 - 5S rRNA rRNA -31 90 1 534 248 40 62 chr3 174468198 174468472 -43568686 - L1M4 LINE L1 -824 5322 5055 246 259 216 17 chr3 174468580 174468696 -43568462 - L2 LINE L2 -580 2734 2596 510 222 15 52 chr3 174470554 174470689 -43566469 - MIR3 SINE MIR -64 144 15 378 296 89 6 chr3 174470758 174470927 -43566231 + L2 LINE L2 1839 2021 -1293 1316 289 54 40 chr3 174470930 174471507 -43565651 - MLT1K LTR MaLR -3 585 1 363 281 94 25 chr3 174471516 174471676 -43565482 + L2 LINE L2 2026 2196 -1118 1095 317 90 32 chr3 174472456 174473103 -43564055 + L2 LINE L2 2210 2893 -421 189 154 0 0 chr3 174473138 174473177 -43563981 + (CA)n Simple_repeat Simple_repeat 2 40 0 11031 165 26 13 chr3 174473551 174478492 -43558666 - L1PBb LINE L1 -1 6359 1 4724 267 40 31 chr3 174478460 174480044 -43557114 - L1PBa LINE L1 -5227 1636 38 * 353 219 49 0 chr3 174480050 174480132 -43557026 - MER4B-int LTR ERV1 -6672 86 1 685 301 111 22 chr3 174480841 174481203 -43555955 + L2 LINE L2 2895 3288 -25 1140 276 54 9 chr3 174481829 174482144 -43555014 - MLT1I LTR MaLR -18 391 63 2369 78 7 0 chr3 174482246 174482540 -43554618 - AluSp SINE Alu -17 296 1 302 322 111 12 chr3 174482635 174482806 -43554352 + MIR3 SINE MIR 21 208 0 638 213 0 0 chr3 174483522 174483630 -43553528 + Tigger3(Golem) DNA MER2_type 1 108 -2921 590 111 37 28 chr3 174483621 174483729 -43553429 + Tigger3(Golem) DNA MER2_type 2278 2386 -643 * 1039 126 0 0 chr3 174483730 174483873 -43553285 + AluJb SINE Alu 1 143 -169 2515 144 5 18 chr3 174483974 174484370 -43552788 + Tigger3(Golem) DNA MER2_type 2639 3029 0 509 274 42 68 chr3 174484517 174484933 -43552225 + L1MC4a LINE L1 5645 5940 -230 186 344 104 0 chr3 174485603 174485699 -43551459 + L2 LINE L2 3157 3262 -10 2178 133 0 9 chr3 174486262 174486577 -43550581 + AluSx SINE Alu 1 312 0 405 0 0 0 chr3 174487590 174487635 -43549523 + (CA)n Simple_repeat Simple_repeat 2 46 0 243 284 0 34 chr3 174487742 174487830 -43549328 + (TATATG)n Simple_repeat Simple_repeat 3 87 0 538 258 65 57 chr3 174487887 174488135 -43549023 + MARNA DNA Mariner 139 388 -198 1211 246 85 23 chr3 174488751 174489222 -43547936 + MLT1J LTR MaLR 4 503 -8 208 266 62 0 chr3 174489374 174489438 -43547720 + L2 LINE L2 2890 2957 -315 27 0 0 0 chr3 174489472 174489499 -43547659 + AT_rich Low_complexity Low_complexity 1 27 0 207 195 24 0 chr3 174489717 174489758 -43547400 + L2 LINE L2 3224 3265 -7 2283 67 7 30 chr3 174490180 174490480 -43546678 - AluY SINE Alu -18 293 1 549 279 152 50 chr3 174491401 174491684 -43545474 + MER102a DNA MER1_type 19 330 0 259 247 129 54 chr3 174492186 174492279 -43544879 - MIR SINE MIR -82 180 81 3591 130 25 7 chr3 174492984 174493544 -43543614 + LTR24B LTR ERV1 1 570 -6 25 51 0 0 chr3 174493929 174493968 -43543190 + AT_rich Low_complexity Low_complexity 1 39 0 235 287 46 65 chr3 174494524 174494632 -43542526 - MIR SINE MIR 0 262 157 23 33 0 0 chr3 174495196 174495226 -43541932 + AT_rich Low_complexity Low_complexity 1 30 0 258 244 76 50 chr3 174496516 174496635 -43540523 + LTR67 LTR ERVL 428 549 -8 535 197 24 141 chr3 174496704 174496917 -43540241 - L2 LINE L2 0 3313 3126 821 230 104 122 chr3 174497975 174498483 -43538675 - MLT1F LTR MaLR -4 538 40 306 0 0 0 chr3 174498491 174498525 -43538633 + (TG)n Simple_repeat Simple_repeat 1 34 0 1829 103 34 8 chr3 174500184 174500447 -43536711 - AluY SINE Alu -1 310 41 596 122 0 0 chr3 174500604 174500686 -43536472 - AluSg/x SINE Alu -16 296 215 349 230 225 31 chr3 174502765 174502956 -43534202 - L1ME4a LINE L1 -162 5959 5732 466 325 31 6 chr3 174503176 174503299 -43533859 + MIR SINE MIR 27 156 -106 1712 188 3 20 chr3 174503299 174503427 -43533731 + AluSx SINE Alu 1 130 -182 207 0 0 0 chr3 174503427 174503450 -43533708 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1712 188 3 20 chr3 174503450 174503625 -43533533 + AluSx SINE Alu 130 299 -13 466 325 31 6 chr3 174503625 174503661 -43533497 + MIR SINE MIR 156 190 -72 21 36 0 0 chr3 174503797 174503825 -43533333 + AT_rich Low_complexity Low_complexity 1 28 0 2113 165 73 5 chr3 174503841 174504240 -43532918 + MSTB LTR MaLR 1 426 0 8810 172 34 10 chr3 174504240 174505851 -43531307 + MSTB-int LTR MaLR 2 1651 0 2335 161 34 7 chr3 174505851 174506266 -43530892 + MSTB LTR MaLR 1 426 0 21 0 0 0 chr3 174506493 174506514 -43530644 + AT_rich Low_complexity Low_complexity 1 21 0 1779 186 8 75 chr3 174506778 174506906 -43530252 + L1 LINE L1 2485 2620 -3526 2321 115 0 0 chr3 174506906 174507218 -43529940 + AluSx SINE Alu 1 312 0 1779 186 8 75 chr3 174507218 174507568 -43529590 + L1 LINE L1 2620 2931 -3215 * 12121 78 3 18 chr3 174507566 174507637 -43529521 - L1P3 LINE L1 -742 5430 5359 2357 94 0 3 chr3 174507637 174507936 -43529222 - AluY SINE Alu -13 298 1 12121 78 3 18 chr3 174507936 174509710 -43527448 - L1P3 LINE L1 -813 5359 3606 671 75 0 2 chr3 174509713 174509814 -43527344 + L1P3 LINE L1 5432 5530 -621 232 159 0 0 chr3 174509799 174509843 -43527315 + L1PB1 LINE L1 5701 5744 -407 * 769 109 0 0 chr3 174509940 174510050 -43527108 - L1PB1 LINE L1 -8 6143 6034 448 215 0 15 chr3 174510050 174510180 -43526978 + (TA)n Simple_repeat Simple_repeat 2 129 0 1128 83 0 0 chr3 174510182 174510338 -43526820 + L1P LINE L1 4041 4196 -1950 225 83 0 0 chr3 174510338 174510374 -43526784 + (TA)n Simple_repeat Simple_repeat 2 37 0 1686 126 7 42 chr3 174510378 174510687 -43526471 + L1PB1 LINE L1 5794 6091 -60 1478 179 99 37 chr3 174510829 174511181 -43525977 - MLT1A2 LTR MaLR 0 374 1 311 296 23 0 chr3 174511212 174511300 -43525858 + L1MC4 LINE L1 6614 6703 -1339 189 0 0 0 chr3 174511300 174511321 -43525837 + (TA)n Simple_repeat Simple_repeat 2 22 0 389 171 6 40 chr3 174511403 174511502 -43525656 - LTR41 LTR ERVL 0 795 680 811 236 85 90 chr3 174511573 174511997 -43525161 - LTR41 LTR ERVL -333 440 19 3224 275 68 31 chr3 174512340 174513538 -43523620 - ERVL LTR ERVL -331 5433 4175 2172 135 22 22 chr3 174513538 174513900 -43523258 - THE1B LTR MaLR -2 362 1 3224 275 68 31 chr3 174513900 174514075 -43523083 - ERVL LTR ERVL -1589 4175 4008 982 283 80 9 chr3 174514216 174514541 -43522617 - ERVL LTR ERVL -2266 3498 3151 1400 304 120 2 chr3 174514543 174515184 -43521974 - ERVL LTR ERVL -2654 3000 2284 959 295 43 3 chr3 174515231 174515556 -43521602 - ERVL LTR ERVL -3555 2209 1872 2238 99 0 23 chr3 174517278 174517581 -43519577 - AluSc SINE Alu -12 297 2 303 183 84 0 chr3 174518037 174518108 -43519050 + MER116 DNA Mariner 3 79 -1 558 329 12 0 chr3 174518203 174518370 -43518788 + L3 LINE CR1 562 730 -847 308 372 35 0 chr3 174518458 174518571 -43518587 - L2 LINE L2 -2 3311 3195 184 237 53 0 chr3 174518684 174518722 -43518436 - L2 LINE L2 -17 3255 3216 1351 312 45 50 chr3 174518726 174519363 -43517795 + L3 LINE CR1 938 1571 -6 676 222 85 11 chr3 174519674 174519863 -43517295 - MLT1K LTR MaLR -4 584 382 430 141 26 0 chr3 174520919 174520997 -43516161 + MADE1 DNA Mariner 1 80 0 981 294 67 13 chr3 174523314 174523552 -43513606 - L1MC4a LINE L1 -743 5403 5624 2343 88 3 0 chr3 174523552 174523846 -43513312 + AluSx SINE Alu 1 295 -17 981 294 67 13 chr3 174523846 174524272 -43512886 - L1MC4a LINE L1 -521 5625 5224 329 254 107 24 chr3 174524303 174524472 -43512686 - L1MC4a LINE L1 -978 5168 4986 2313 128 22 11 chr3 174525234 174525594 -43511564 + THE1B LTR MaLR 1 364 0 309 51 0 0 chr3 174529357 174529396 -43507762 + (TG)n Simple_repeat Simple_repeat 1 39 0 1771 191 75 40 chr3 174530003 174530473 -43506685 - MER66B LTR ERV1 0 486 1 8220 134 21 25 chr3 174530473 174531093 -43506065 - MER66A-int LTR ERV1 0 6676 6055 705 257 189 33 chr3 174531093 174531400 -43505758 + LTR18A LTR ERVL 3 357 0 8220 134 21 25 chr3 174531400 174532982 -43504176 - MER66A-int LTR ERV1 -621 6055 4551 1759 300 13 34 chr3 174532988 174533945 -43503213 - MER66A-int LTR ERV1 -1317 3637 3547 2824 177 46 28 chr3 174533974 174534585 -43502573 - MER66A-int LTR ERV1 -4843 1833 1212 644 282 13 0 chr3 174534681 174534837 -43502321 - MER66A-int LTR ERV1 -3573 3103 2946 3972 196 85 43 chr3 174534925 174535982 -43501176 - MER66A-int LTR ERV1 -5571 1105 4 919 184 11 0 chr3 174535985 174536159 -43500999 - MER66A LTR ERV1 0 478 303 469 188 0 0 chr3 174536175 174536255 -43500903 + MER66B LTR ERV1 407 486 0 216 0 0 0 chr3 174536474 174536498 -43500660 + (TG)n Simple_repeat Simple_repeat 2 25 0 712 284 68 19 chr3 174537215 174537525 -43499633 + MLT1I LTR MaLR 80 404 -5 23 0 0 0 chr3 174538324 174538347 -43498811 + AT_rich Low_complexity Low_complexity 1 23 0 740 272 90 48 chr3 174538589 174538924 -43498234 - L2 LINE L2 0 3313 2965 1516 189 29 84 chr3 174540560 174541011 -43496147 - MLT1C LTR MaLR 0 467 42 2138 264 91 11 chr3 174541158 174542692 -43494466 - L1ME3A LINE L1 -5 6165 4501 612 222 182 6 chr3 174542699 174542875 -43494283 - MER58C DNA MER1_type -8 207 1 782 236 96 57 chr3 174542959 174543048 -43494110 - L1ME3A LINE L1 -2106 4040 3956 1880 141 42 29 chr3 174543048 174543425 -43493733 + L1PA10 LINE L1 5782 6163 -5 782 236 96 57 chr3 174543425 174543721 -43493437 - L1ME3A LINE L1 -2190 3956 3640 384 145 0 0 chr3 174543763 174543825 -43493333 + MLT1H1 LTR MaLR 341 402 -153 616 251 153 42 chr3 174543836 174544143 -43493015 - MER2 DNA MER2_type 0 344 4 323 316 137 0 chr3 174544162 174544279 -43492879 + MIR3 SINE MIR 68 200 -8 348 269 126 24 chr3 174545145 174545312 -43491846 - L2 LINE L2 0 3313 3130 505 311 79 17 chr3 174545340 174545581 -43491577 - L2 LINE L2 -352 2962 2707 350 326 113 21 chr3 174545636 174545777 -43491381 - L2 LINE L2 -4 3268 3115 276 269 39 0 chr3 174546079 174546157 -43491001 + MIR3 SINE MIR 113 193 -15 659 148 45 13 chr3 174546215 174546370 -43490788 + MER58D DNA MER1_type 112 271 -115 413 199 125 15 chr3 174546378 174546514 -43490644 + MER58D DNA MER1_type 236 386 0 240 317 137 49 chr3 174547591 174547774 -43489384 + MIR SINE MIR 46 244 -18 224 208 250 14 chr3 174547851 174547923 -43489235 - MIR SINE MIR -97 111 23 23 33 0 0 chr3 174548601 174548631 -43488527 + AT_rich Low_complexity Low_complexity 1 30 0 964 254 220 12 chr3 174548778 174549298 -43487860 - L2 LINE L2 -266 3047 2428 596 250 113 33 chr3 174550841 174551053 -43486105 - MIR SINE MIR -33 229 1 385 219 49 12 chr3 174552193 174552275 -43484883 + L2 LINE L2 3187 3271 -42 1368 163 44 29 chr3 174552277 174552606 -43484552 - MER33 DNA MER1_type 0 324 1 553 303 81 37 chr3 174552761 174553180 -43483978 + L2 LINE L2 2601 3068 -204 2428 61 7 3 chr3 174553422 174553716 -43483442 + AluY SINE Alu 1 295 -16 270 208 89 132 chr3 174553955 174554148 -43483010 + MER5A DNA MER1_type 1 178 0 1221 257 204 16 chr3 174554667 174555490 -43481668 - L2 LINE L2 -3 3310 2351 513 130 83 0 chr3 174555827 174555935 -43481223 + MER58D DNA MER1_type 112 228 -158 2187 163 23 2 chr3 174556119 174556549 -43480609 + L1PB1 LINE L1 609 1047 -5816 13488 188 30 12 chr3 174556551 174562025 -43475133 + L1PB1 LINE L1 1093 6863 -4 454 129 0 0 chr3 174562035 174562105 -43475053 - MER101 LTR ERV1 -402 72 3 622 196 118 69 chr3 174562303 174562609 -43474549 + L1MC5 LINE L1 6913 7233 -728 225 158 13 40 chr3 174562690 174562766 -43474392 + L1MC5 LINE L1 7859 7932 -29 460 283 80 14 chr3 174563426 174563638 -43473520 + MIR SINE MIR 2 227 -35 288 305 61 38 chr3 174563870 174564001 -43473157 + L2 LINE L2 3106 3239 -33 443 290 89 12 chr3 174564148 174564396 -43472762 - L1ME4a LINE L1 -195 5926 5660 794 171 0 32 chr3 174564423 174564581 -43472577 - L1MD2 LINE L1 -15 6344 6192 408 366 21 47 chr3 174568192 174568531 -43468627 + L2 LINE L2 2942 3271 -1 337 316 0 45 chr3 174568558 174568713 -43468445 + MER5A DNA MER1_type 37 184 -5 510 277 54 33 chr3 174568729 174568913 -43468245 + MIR3 SINE MIR 7 194 -14 917 207 74 18 chr3 174569137 174569354 -43467804 + MLT1E LTR MaLR 8 236 -357 1014 210 90 0 chr3 174569362 174569595 -43467563 + MLT1E LTR MaLR 338 591 -2 225 237 35 123 chr3 174569611 174569725 -43467433 - MLT1H LTR MaLR -16 533 430 255 279 0 0 chr3 174569871 174569939 -43467219 - MLT1I LTR MaLR -261 148 81 393 325 27 11 chr3 174569998 174570196 -43466962 - MIR SINE MIR -44 218 20 358 309 92 92 chr3 174570286 174570678 -43466480 + L2 LINE L2 2875 3266 -6 200 383 158 0 chr3 174570980 174571220 -43465938 - L2 LINE L2 -499 2815 2538 235 222 0 0 chr3 174571402 174571447 -43465711 + MIR SINE MIR 79 123 -139 2049 91 8 0 chr3 174571704 174571992 -43465166 - AluSq SINE Alu 0 309 20 483 348 33 26 chr3 174572252 174572515 -43464643 - L1ME3A LINE L1 -230 5940 5680 1242 167 19 5 chr3 174572515 174572731 -43464427 + MER20 DNA MER1_type 1 219 0 483 348 33 26 chr3 174572731 174573008 -43464150 - L1ME3A LINE L1 -490 5680 5396 261 316 46 46 chr3 174573066 174573262 -43463896 + MIR SINE MIR 66 261 -1 315 277 175 28 chr3 174573558 174573735 -43463423 - MIR SINE MIR -26 236 34 217 50 25 25 chr3 174576440 174576480 -43460678 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 6452 14 0 1 chr3 174576480 174577247 -43459911 - L1PA2 LINE L1 -24 6131 5366 922 249 52 0 chr3 174577300 174577513 -43459645 - MER58A DNA MER1_type 0 224 1 260 251 98 31 chr3 174577536 174577699 -43459459 + MER112 DNA MER1_type 1 174 -86 423 92 0 15 chr3 174577700 174577765 -43459393 - MSTA LTR MaLR 0 428 365 1820 134 139 19 chr3 174577866 174578240 -43458918 - MSTA LTR MaLR -9 419 1 348 198 10 52 chr3 174578240 174578331 -43458827 + MER112 DNA MER1_type 161 247 -13 733 258 18 0 chr3 174578562 174578725 -43458433 - MER45A DNA AcHobo -3 175 10 2731 176 4 0 chr3 174579175 174579636 -43457522 - MLT1C LTR MaLR 0 467 5 314 242 110 29 chr3 174579830 174580031 -43457127 + MLT1L LTR MaLR 112 394 -221 197 247 0 26 chr3 174580359 174580436 -43456722 + CT-rich Low_complexity Low_complexity 2 76 0 194 315 94 60 chr3 174581418 174581567 -43455591 + MIR SINE MIR 32 185 -77 206 350 88 0 chr3 174581589 174581669 -43455489 + L2 LINE L2 3186 3272 0 871 265 119 75 chr3 174582175 174583045 -43454113 - L2 LINE L2 -1 3312 2364 682 79 0 0 chr3 174583483 174583572 -43453586 + AluY SINE Alu 207 295 -16 21 57 0 0 chr3 174583889 174583924 -43453234 + AT_rich Low_complexity Low_complexity 1 35 0 3446 68 23 0 chr3 174583994 174584437 -43452721 - MLT2A2 LTR ERVL 0 453 1 868 260 79 43 chr3 174585137 174585556 -43451602 - MLT1C LTR MaLR 0 467 34 343 227 0 11 chr3 174585568 174585656 -43451502 + L1MC4a LINE L1 7650 7736 -72 202 333 91 0 chr3 174585775 174585841 -43451317 + MER5A DNA MER1_type 87 158 -31 2286 105 0 3 chr3 174586551 174586847 -43450311 + AluSg SINE Alu 1 295 -15 351 0 0 0 chr3 174588765 174588804 -43448354 + (CA)n Simple_repeat Simple_repeat 2 40 0 191 145 58 29 chr3 174590472 174590541 -43446617 + CT-rich Low_complexity Low_complexity 5 75 0 541 244 93 36 chr3 174590898 174591316 -43445842 - L1MC5 LINE L1 -31 7930 7489 459 253 142 62 chr3 174591346 174591508 -43445650 - MER5A DNA MER1_type -6 183 9 308 260 48 0 chr3 174591522 174591626 -43445532 - L1MC5 LINE L1 -529 7432 7324 3362 104 36 82 chr3 174591726 174592358 -43444800 - LTR26 LTR ERV1 0 603 1 888 253 23 14 chr3 174592481 174592702 -43444456 - MIR SINE MIR 0 262 40 963 253 79 77 chr3 174593106 174593560 -43443598 - MER77 LTR ERV1 -6 599 145 498 252 60 13 chr3 174593547 174593698 -43443460 - MER77 LTR ERV1 -395 210 53 * 228 286 36 0 chr3 174594481 174594537 -43442621 + L2 LINE L2 3188 3245 -27 3766 188 20 22 chr3 174594903 174595761 -43441397 - L1MB8 LINE L1 0 6178 5318 240 111 0 0 chr3 174596266 174596302 -43440856 + (CA)n Simple_repeat Simple_repeat 1 36 0 326 305 75 69 chr3 174596331 174596906 -43440252 - L2 LINE L2 -12 3260 2622 247 302 105 23 chr3 174597601 174597687 -43439471 + L2 LINE L2 3219 3311 -2 700 269 64 21 chr3 174597696 174597808 -43439350 - MIR SINE MIR -17 245 139 1205 161 89 7 chr3 174597808 174598100 -43439058 - MER33 DNA MER1_type -4 320 5 700 269 64 21 chr3 174598100 174598221 -43438937 - MIR SINE MIR -123 139 2 406 243 34 27 chr3 174598892 174599040 -43438118 - MLT1G1 LTR MaLR -7 548 400 281 276 0 0 chr3 174599046 174599104 -43438054 + Tigger3(Golem) DNA MER2_type 1 58 -2971 2305 128 124 9 chr3 174599113 174599558 -43437600 + Tigger3(Golem) DNA MER2_type 2534 3029 0 511 218 85 65 chr3 174599633 174599939 -43437219 - MLT1G1 LTR MaLR -302 247 10 472 159 128 0 chr3 174600327 174600479 -43436679 + LTR33A LTR ERVL 443 523 0 2377 135 17 60 chr3 174600484 174600898 -43436260 - MSTD LTR MaLR 0 396 1 184 277 143 50 chr3 174601871 174601990 -43435168 + MIR SINE MIR 17 146 -62 324 0 0 0 chr3 174604012 174604048 -43433110 + (CA)n Simple_repeat Simple_repeat 2 37 0 1756 176 101 25 chr3 174604252 174604689 -43432469 - Charlie1b DNA MER1_type 0 523 54 475 191 35 52 chr3 174604779 174604894 -43432264 + MIR SINE MIR 21 133 -129 231 61 0 0 chr3 174604894 174604927 -43432231 + (TTTAA)n Simple_repeat Simple_repeat 3 35 0 31317 100 8 52 chr3 174604928 174611347 -43425811 - L1PA7 LINE L1 -11 6143 12 305 299 77 8 chr3 174611362 174611479 -43425679 + MIR SINE MIR 122 246 -16 215 258 180 11 chr3 174611512 174611601 -43425557 + MIR3 SINE MIR 98 201 -7 2277 109 0 0 chr3 174612539 174612842 -43424316 - AluSx SINE Alu -9 303 1 222 232 0 36 chr3 174613884 174613940 -43423218 + L2 LINE L2 3210 3263 -9 684 253 80 85 chr3 174614277 174614688 -43422470 + MLT1I LTR MaLR 1 409 0 228 333 32 41 chr3 174614758 174614881 -43422277 - MER5A DNA MER1_type -7 182 61 26 30 0 0 chr3 174615534 174615567 -43421591 + AT_rich Low_complexity Low_complexity 1 33 0 1145 243 73 60 chr3 174616109 174616664 -43420494 + MER34B LTR ERV1 1 542 0 1129 320 55 28 chr3 174616833 174617326 -43419832 - MLT1K LTR MaLR -81 507 2 576 215 23 0 chr3 174617925 174618055 -43419103 + MIR SINE MIR 127 259 -3 21 0 0 0 chr3 174618185 174618206 -43418952 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr3 174619499 174619529 -43417629 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr3 174619658 174619688 -43417470 + AT_rich Low_complexity Low_complexity 1 30 0 210 343 19 0 chr3 174620133 174620241 -43416917 - L2 LINE L2 -996 2318 2209 2168 139 0 0 chr3 174620258 174620567 -43416591 - AluSx SINE Alu -3 309 1 241 267 17 0 chr3 174620604 174620664 -43416494 - L2 LINE L2 -4 3268 3208 182 362 31 31 chr3 174621539 174621666 -43415492 + L2 LINE L2 2252 2378 -936 524 293 69 43 chr3 174622286 174622474 -43414684 - MIR SINE MIR -50 212 20 189 0 0 0 chr3 174625644 174625665 -43411493 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 28 29 0 0 chr3 174625665 174625700 -43411458 + AT_rich Low_complexity Low_complexity 1 35 0 2063 101 24 7 chr3 174626106 174626393 -43410765 + AluSg SINE Alu 13 304 -6 302 287 74 0 chr3 174626786 174626908 -43410250 + L1MC/D LINE L1 5622 5752 -2056 214 182 0 0 chr3 174627618 174627662 -43409496 + T-rich Low_complexity Low_complexity 1 44 0 816 118 0 0 chr3 174627846 174627956 -43409202 + AluSp/q SINE Alu 176 285 -28 367 317 7 21 chr3 174628659 174628804 -43408354 + MIR3 SINE MIR 42 184 -24 245 267 56 33 chr3 174629135 174629225 -43407933 + L2 LINE L2 3181 3272 0 749 220 52 101 chr3 174629313 174629599 -43407559 + L2 LINE L2 3042 3313 0 7474 35 0 4 chr3 174630362 174631795 -43405363 - L1PA4 LINE L1 -1 6154 4725 250 204 106 23 chr3 174632971 174633103 -43404055 - L1ME4a LINE L1 -11 6110 5968 1055 203 22 0 chr3 174633479 174633695 -43403463 - LTR40a LTR ERVL 0 519 241 186 258 16 48 chr3 174634882 174634944 -43402214 - L2 LINE L2 -74 3239 3180 2368 78 7 0 chr3 174634980 174635275 -43401883 - AluY SINE Alu -14 297 1 9021 20 1 1 chr3 174635458 174636941 -43400217 + L1P1 LINE L1 4267 5750 -405 981 151 11 22 chr3 174637042 174637227 -43399931 - THE1C LTR MaLR -192 183 1 234 0 0 0 chr3 174637657 174637683 -43399475 + (T)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr3 174638471 174638492 -43398666 + AT_rich Low_complexity Low_complexity 1 21 0 230 0 33 0 chr3 174638584 174638614 -43398544 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 4891 208 21 35 chr3 174638614 174640614 -43396544 - L1PA7 LINE L1 -16 6841 4873 900 86 179 16 chr3 174640619 174640851 -43396307 + LTR14B LTR ERVK 1 383 -225 905 265 58 75 chr3 174640953 174641368 -43395790 - L2 LINE L2 -835 2479 2072 1799 208 49 42 chr3 174641461 174641990 -43395168 - Tigger8 DNA MER2_type -119 547 15 311 242 55 62 chr3 174642982 174643110 -43394048 - L1ME4a LINE L1 -202 5968 5842 501 332 63 46 chr3 174643270 174643701 -43393457 - L1ME4a LINE L1 -782 5364 4927 1603 54 13 8 chr3 174643840 174644079 -43393079 - L1P LINE L1 -5906 240 1 2197 202 20 41 chr3 174648003 174648563 -43388595 - LTR55 LTR ERV 0 548 1 561 339 106 19 chr3 174650094 174650472 -43386686 - L2 LINE L2 -1109 2205 1795 261 219 0 152 chr3 174650582 174650806 -43386352 + HsTC2 DNA Tc2 98 287 -1611 507 200 144 56 chr3 174651265 174651460 -43385698 - L1ME3 LINE L1 -1 6161 5950 2908 97 42 0 chr3 174651577 174652052 -43385106 - L1MA3 LINE L1 -36 6269 5775 974 145 19 0 chr3 174652063 174652222 -43384936 - L1PA16 LINE L1 -11 6155 5994 13053 192 22 42 chr3 174652327 174656622 -43380536 - L1PA7 LINE L1 -2070 4779 578 1728 123 28 12 chr3 174656637 174657172 -43379986 + L1M1 LINE L1 5003 5545 -743 1918 165 9 3 chr3 174657172 174657505 -43379653 + MSTA LTR MaLR 1 335 -93 375 107 0 0 chr3 174657610 174657666 -43379492 + MSTA LTR MaLR 373 428 0 1169 97 151 5 chr3 174657666 174657872 -43379286 + L1M1 LINE L1 5541 5776 -529 495 209 0 0 chr3 174657874 174657965 -43379193 + L1PA15-16 LINE L1 721 811 -6038 1600 183 13 48 chr3 174659288 174659666 -43377492 + MLT1A1 LTR MaLR 1 365 0 784 31 0 0 chr3 174660451 174660549 -43376609 + L1P LINE L1 1 98 -6048 * 33628 41 29 3 chr3 174660543 174664992 -43372166 + L1P LINE L1 617 5181 -965 425 184 103 0 chr3 174665092 174665179 -43371979 + FRAM SINE Alu 60 155 -21 2481 93 0 0 chr3 174665260 174665571 -43371587 - AluY SINE Alu 0 311 1 2196 117 78 16 chr3 174665581 174665967 -43371191 - L1PA13 LINE L1 -2 6161 5752 3814 54 20 16 chr3 174665974 174666477 -43370681 - L1PA7 LINE L1 -9 6145 5641 2958 96 9 0 chr3 174666477 174666916 -43370242 - L1PA13 LINE L1 -382 5779 5337 1011 83 0 0 chr3 174666926 174667071 -43370087 - L1PA7 LINE L1 -81 6073 5929 773 117 55 0 chr3 174667072 174667217 -43369941 - L1PA7 LINE L1 -767 5379 5227 236 242 50 61 chr3 174667311 174667410 -43369748 - L1MC5 LINE L1 -563 7398 7301 328 208 89 20 chr3 174667491 174667592 -43369566 - L1MC4 LINE L1 -800 7242 7135 304 313 54 0 chr3 174667604 174667716 -43369442 - L1MC5 LINE L1 -878 7083 6966 319 282 136 15 chr3 174667897 174668103 -43369055 - L1MC4a LINE L1 -1025 6783 6553 321 326 138 61 chr3 174668189 174668698 -43368460 - L1MC4a LINE L1 -1360 6448 5901 356 302 34 34 chr3 174669123 174669272 -43367886 - HAL1b LINE L1 -486 862 714 529 318 56 22 chr3 174669303 174669766 -43367392 - HAL1b LINE L1 -705 643 165 451 251 21 45 chr3 174670676 174670919 -43366239 - L1MEc LINE L1 -3778 2351 2115 278 277 10 0 chr3 174671451 174671552 -43365606 - L1MEc LINE L1 -5058 1252 1151 337 300 84 35 chr3 174671654 174672057 -43365101 - L1MEc LINE L1 -5128 991 569 1684 124 15 0 chr3 174672081 174672347 -43364811 - Tigger2 DNA MER2_type -2177 541 272 28 48 0 0 chr3 174672926 174672968 -43364190 + AT_rich Low_complexity Low_complexity 1 42 0 632 279 32 60 chr3 174673105 174673421 -43363737 - L1MC4a LINE L1 -333 5788 5482 223 362 53 11 chr3 174673618 174673712 -43363446 + MIR3 SINE MIR 96 193 -15 540 307 17 34 chr3 174674398 174674636 -43362522 - L3 LINE CR1 0 1577 1344 825 234 46 50 chr3 174674887 174675015 -43362143 - MIR SINE MIR -21 241 114 2043 174 152 9 chr3 174675015 174675056 -43362102 - MLT2B1 LTR ERVL 0 520 486 369 0 0 0 chr3 174675056 174675097 -43362061 + (TA)n Simple_repeat Simple_repeat 1 41 0 * 411 38 0 0 chr3 174675096 174675149 -43362009 + (GA)n Simple_repeat Simple_repeat 2 54 0 2043 174 152 9 chr3 174675097 174675562 -43361596 - MLT2B1 LTR ERVL -34 486 1 825 234 46 50 chr3 174675562 174675672 -43361486 - MIR SINE MIR -148 114 4 236 175 0 0 chr3 174675673 174675713 -43361445 + MER94 DNA DNA 1 40 -94 1624 154 41 0 chr3 174675730 174675996 -43361162 - AluJo SINE Alu -23 289 13 274 176 0 0 chr3 174676008 174676059 -43361099 + MER94 DNA DNA 35 85 -49 499 232 28 7 chr3 174676126 174676268 -43360890 - MER69 DNA AcHobo -1 2525 2381 21 57 0 0 chr3 174676693 174676728 -43360430 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 174677364 174677387 -43359771 + AT_rich Low_complexity Low_complexity 1 23 0 280 360 78 7 chr3 174680197 174680350 -43356808 - L2 LINE L2 -8 3264 3101 619 258 101 14 chr3 174680354 174680563 -43356595 - MIR SINE MIR 0 262 36 1922 88 4 0 chr3 174680891 174681131 -43356027 + AluSq SINE Alu 59 299 -14 473 281 43 0 chr3 174681157 174681296 -43355862 + MIR SINE MIR 7 151 -111 284 85 0 0 chr3 174681433 174681480 -43355678 - L1MA3 LINE L1 0 6305 6259 238 145 0 84 chr3 174681490 174681573 -43355585 + (TA)n Simple_repeat Simple_repeat 1 76 0 342 168 16 2 chr3 174681928 174681999 -43355159 + FLAM_A SINE Alu 2 61 -71 1576 251 140 29 chr3 174682101 174682731 -43354427 - L2 LINE L2 -568 2746 2047 1236 211 52 0 chr3 174682806 174683076 -43354082 - MER21B LTR ERV1 -69 794 511 1547 220 22 25 chr3 174683339 174683703 -43353455 + MLT1A1 LTR MaLR 1 363 -2 749 233 72 0 chr3 174683830 174684034 -43353124 - MIR SINE MIR 0 262 40 231 36 0 0 chr3 174684224 174684252 -43352906 + (A)n Simple_repeat Simple_repeat 1 28 0 343 260 125 31 chr3 174685164 174685356 -43351802 - MIR SINE MIR -6 256 47 204 67 0 0 chr3 174685869 174685899 -43351259 + (TG)n Simple_repeat Simple_repeat 2 31 0 505 246 162 37 chr3 174686371 174686562 -43350596 + MIR SINE MIR 47 261 -1 555 302 80 85 chr3 174686582 174686946 -43350212 + L2 LINE L2 2907 3268 -4 2189 114 0 3 chr3 174690530 174690828 -43346330 - AluSx SINE Alu -15 297 1 813 236 155 49 chr3 174691323 174691730 -43345428 - MLT1J2 LTR MaLR 0 450 1 956 163 13 84 chr3 174691941 174692001 -43345157 + AluJb SINE Alu 87 150 -213 2071 77 0 37 chr3 174692001 174692299 -43344859 + L1PA7 LINE L1 5868 6154 0 956 163 13 84 chr3 174692299 174692531 -43344627 + AluJb SINE Alu 150 363 0 1598 92 0 0 chr3 174692775 174692993 -43344165 + THE1A LTR MaLR 138 355 0 11060 92 37 1 chr3 174692993 174694517 -43342641 + THE1A-int LTR MaLR 1 1580 0 2862 73 0 0 chr3 174694517 174694872 -43342286 + THE1A LTR MaLR 1 355 0 251 62 0 0 chr3 174694872 174694904 -43342254 + FLAM_A SINE Alu 88 119 -14 1001 221 53 18 chr3 174695411 174695696 -43341462 + MER113 DNA MER1_type? 155 449 -72 196 282 12 94 chr3 174695791 174695876 -43341282 - MIR SINE MIR -112 96 19 2219 119 0 10 chr3 174696779 174697089 -43340069 - AluSx SINE Alu -5 307 1 1763 189 70 43 chr3 174697089 174697577 -43339581 - MLT1D LTR MaLR 0 505 5 335 0 54 18 chr3 174697650 174697706 -43339452 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 7653 17 0 0 chr3 174697706 174698735 -43338423 - L1PA2 LINE L1 -16 6139 5110 818 231 115 41 chr3 174700688 174701104 -43336054 + MLT1J2 LTR MaLR 3 446 0 196 318 0 0 chr3 174701122 174701166 -43335992 + MIR SINE MIR 108 151 -57 710 280 55 17 chr3 174701167 174701403 -43335755 + L2 LINE L2 2877 3121 -192 221 243 122 27 chr3 174701709 174701783 -43335375 - MIR SINE MIR -71 191 111 343 308 22 11 chr3 174701783 174701874 -43335284 + L2 LINE L2 3150 3241 -31 205 282 0 64 chr3 174701909 174701987 -43335171 - MIR SINE MIR -117 91 19 373 341 106 46 chr3 174702030 174702397 -43334761 + L2 LINE L2 2921 3309 -4 341 311 0 0 chr3 174702436 174702539 -43334619 - MER117 DNA MER1_type -38 159 57 490 239 194 0 chr3 174702546 174702680 -43334478 + MER5A DNA MER1_type 9 168 -21 392 344 16 60 chr3 174702783 174703097 -43334061 + MER115 DNA AcHobo 148 447 -246 394 336 8 15 chr3 174706109 174706243 -43330915 + L2 LINE L2 3178 3310 -3 220 288 68 0 chr3 174706275 174706334 -43330824 - L2 LINE L2 -64 3208 3146 344 301 145 26 chr3 174706376 174706569 -43330589 - MIR SINE MIR -13 249 34 1261 171 68 4 chr3 174706750 174707013 -43330145 + MSTD-int LTR MaLR 1456 1735 0 1901 159 99 11 chr3 174707013 174707377 -43329781 + MSTD LTR MaLR 1 396 0 181 176 0 0 chr3 174708439 174708473 -43328685 - MER5A DNA MER1_type -24 165 132 444 37 0 0 chr3 174710682 174710736 -43326422 + (TG)n Simple_repeat Simple_repeat 1 54 0 707 235 115 70 chr3 174713470 174713713 -43323445 - MIR SINE MIR 0 262 9 741 316 108 8 chr3 174713792 174714191 -43322967 - LTR16A LTR ERVL -9 441 3 544 246 78 7 chr3 174714229 174714371 -43322787 + MER96 DNA MER1_type? 16 167 -8 287 341 84 6 chr3 174714477 174714656 -43322502 + L2 LINE L2 2624 2816 -498 263 345 97 27 chr3 174714965 174715264 -43321894 - L2 LINE L2 -568 2746 2427 26 0 0 0 chr3 174715633 174715659 -43321499 + AT_rich Low_complexity Low_complexity 1 26 0 471 241 71 29 chr3 174716567 174716737 -43320421 - MIR SINE MIR -50 212 36 276 255 370 16 chr3 174717386 174717570 -43319588 + MIR SINE MIR 3 251 -11 838 236 62 21 chr3 174717597 174717838 -43319320 + MIR SINE MIR 1 251 -11 558 289 38 32 chr3 174718140 174718483 -43318675 + L1MC/D LINE L1 5536 5886 -284 192 318 73 36 chr3 174719271 174719381 -43317777 - MIR SINE MIR -50 212 99 587 273 116 32 chr3 174719629 174719845 -43317313 + MIR SINE MIR 15 248 -14 21 0 0 0 chr3 174719855 174719876 -43317282 + AT_rich Low_complexity Low_complexity 1 21 0 367 241 90 28 chr3 174720684 174720829 -43316329 - L1ME LINE L1 -437 5684 5531 655 281 77 5 chr3 174721445 174721666 -43315492 - MIR SINE MIR -6 256 20 805 263 167 21 chr3 174721803 174722240 -43314918 - MLT1L LTR MaLR 0 615 115 545 242 19 19 chr3 174723099 174723256 -43313902 - MIR SINE MIR -3 259 103 2452 209 25 10 chr3 174723753 174724617 -43312541 + L1MD2 LINE L1 4929 5807 -552 2319 184 30 15 chr3 174724631 174725093 -43312065 + L1MD2 LINE L1 5872 6340 -19 212 273 169 29 chr3 174725138 174725310 -43311848 - L2 LINE L2 -955 2359 2164 740 255 52 0 chr3 174725321 174725513 -43311645 - MIR SINE MIR 0 262 61 6378 23 0 0 chr3 174725761 174726530 -43310628 - L1PA3 LINE L1 0 6155 5387 528 16 0 0 chr3 174726635 174726696 -43310462 + (TA)n Simple_repeat Simple_repeat 2 62 0 251 315 20 94 chr3 174727299 174727448 -43309710 + L3 LINE CR1 1437 1574 -3 643 246 23 0 chr3 174727702 174727832 -43309326 - L2 LINE L2 -1 3271 3139 282 347 24 16 chr3 174727904 174728028 -43309130 - MIR SINE MIR -34 228 104 755 291 45 0 chr3 174728446 174728690 -43308468 - MIR SINE MIR -6 256 2 372 212 0 0 chr3 174730140 174730225 -43306933 - Charlie7 DNA MER1_type -2521 91 7 638 307 153 11 chr3 174730251 174730629 -43306529 - MLT1J2 LTR MaLR -18 432 1 299 264 86 50 chr3 174730739 174730959 -43306199 - MLT1J LTR MaLR -11 500 273 1856 159 19 19 chr3 174731151 174731459 -43305699 - AluJo SINE Alu -4 308 1 1464 205 19 48 chr3 174731963 174732339 -43304819 - MLT1A1 LTR MaLR 0 365 1 444 265 19 113 chr3 174733488 174733745 -43303413 + MER115 DNA AcHobo 305 537 -156 316 300 150 28 chr3 174734193 174734480 -43302678 + L2 LINE L2 2538 2859 -455 296 403 7 21 chr3 174734658 174734802 -43302356 + L2 LINE L2 3118 3259 -13 189 74 0 0 chr3 174734802 174734829 -43302329 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 438 296 30 7 chr3 174734898 174735033 -43302125 - MIR SINE MIR -24 238 101 3117 169 57 7 chr3 174735033 174735650 -43301508 + L1MC3 LINE L1 7132 7779 -6 233 240 53 27 chr3 174735660 174735735 -43301423 - MIR SINE MIR -169 93 17 491 313 77 18 chr3 174736170 174736412 -43300746 + MIR SINE MIR 1 256 -6 229 376 110 0 chr3 174736507 174736616 -43300542 + L2 LINE L2 3133 3253 -19 271 277 203 17 chr3 174737340 174737517 -43299641 + MIR SINE MIR 53 262 0 328 268 31 9 chr3 174739176 174739300 -43297858 - MIR SINE MIR -65 143 29 1055 169 0 0 chr3 174739771 174739955 -43297203 - L1MD2 LINE L1 -34 6325 6142 370 204 133 10 chr3 174740212 174740310 -43296848 + MIR SINE MIR 123 232 -30 246 322 67 11 chr3 174740342 174740432 -43296726 - L2 LINE L2 -4 3268 3174 450 276 21 28 chr3 174740787 174740932 -43296226 + MIR SINE MIR 8 151 -111 398 332 65 9 chr3 174740999 174741213 -43295945 + LTR33 LTR ERVL 23 248 -273 340 307 54 18 chr3 174741286 174741452 -43295706 + LTR33 LTR ERVL 350 521 0 24 32 0 0 chr3 174741463 174741494 -43295664 + AT_rich Low_complexity Low_complexity 1 31 0 189 0 0 0 chr3 174741633 174741654 -43295504 + (CA)n Simple_repeat Simple_repeat 2 22 0 243 330 18 36 chr3 174742277 174742389 -43294769 - MIR3 SINE MIR -6 202 93 271 86 0 35 chr3 174742593 174742651 -43294507 + (TTTC)n Simple_repeat Simple_repeat 2 57 0 1739 229 24 91 chr3 174743480 174744096 -43293062 - MLT1E LTR MaLR 0 593 19 654 218 181 65 chr3 174745103 174745489 -43291669 - MLT1J2 LTR MaLR -19 431 1 768 268 35 22 chr3 174745595 174745826 -43291332 - MIR SINE MIR -21 241 8 240 305 48 0 chr3 174745899 174746004 -43291154 - MIR SINE MIR -87 175 66 1840 171 61 6 chr3 174746169 174746515 -43290643 - MLT1A1 LTR MaLR 0 365 1 2237 126 0 0 chr3 174746667 174746968 -43290190 + AluSg SINE Alu 1 301 -9 200 310 23 27 chr3 174747699 174747830 -43289328 - MIR SINE MIR -56 206 79 207 306 16 16 chr3 174749566 174749628 -43287530 - MIR SINE MIR -109 99 38 22 0 0 30 chr3 174749656 174749675 -43287483 + AT_rich Low_complexity Low_complexity 1 20 -12 1650 136 39 0 chr3 174749675 174749961 -43287197 - L1MC1 LINE L1 -2 6331 6035 22 0 0 30 chr3 174749961 174749974 -43287184 + AT_rich Low_complexity Low_complexity 20 32 0 469 340 19 0 chr3 174750297 174750456 -43286702 + MIR SINE MIR 2 163 -99 318 193 0 48 chr3 174750456 174750539 -43286619 - MLT1C LTR MaLR 0 467 389 * 674 275 30 34 chr3 174750536 174750798 -43286360 - LTR40c LTR ERVL -202 263 3 364 320 58 18 chr3 174750909 174751134 -43286024 - L2 LINE L2 -359 2955 2722 181 129 0 32 chr3 174751435 174751466 -43285692 - MIR SINE MIR -15 247 218 2152 103 0 3 chr3 174752121 174752403 -43284755 - AluSx SINE Alu -31 281 1 27 0 0 0 chr3 174752415 174752442 -43284716 + AT_rich Low_complexity Low_complexity 1 27 0 1108 240 10 91 chr3 174753453 174753849 -43283309 - MLT1A1 LTR MaLR -1 364 1 325 374 9 0 chr3 174753870 174753985 -43283173 - MIR3 SINE MIR -79 129 14 225 410 8 8 chr3 174754189 174754311 -43282847 - MIR3 SINE MIR -85 123 2 387 41 0 0 chr3 174754327 174754376 -43282782 + (CA)n Simple_repeat Simple_repeat 2 50 0 277 357 56 16 chr3 174756207 174756333 -43280825 + MIR3 SINE MIR 7 137 -71 786 215 0 13 chr3 174757614 174757763 -43279395 + MER5A DNA MER1_type 2 148 -41 230 348 69 34 chr3 174759490 174759694 -43277464 + L2 LINE L2 2758 2968 -346 1192 197 77 15 chr3 174759816 174760090 -43277068 - LTR16C LTR ERVL -11 480 190 297 0 0 0 chr3 174760269 174760302 -43276856 + (CA)n Simple_repeat Simple_repeat 2 34 0 290 330 110 20 chr3 174760321 174760421 -43276737 + L2 LINE L2 3155 3263 -9 2269 90 3 0 chr3 174761331 174761619 -43275539 - AluY SINE Alu -22 289 1 1993 197 66 21 chr3 174811825 174812308 -43224850 + MLT1D LTR MaLR 1 505 0 778 250 80 0 chr3 174812584 174812772 -43224386 + MIR SINE MIR 2 204 -58 186 189 0 0 chr3 174812787 174812824 -43224334 + (TATATG)n Simple_repeat Simple_repeat 6 42 0 230 299 0 0 chr3 174812827 174812894 -43224264 + MIR SINE MIR 185 251 -11 246 81 0 0 chr3 174814231 174814268 -43222890 + (TG)n Simple_repeat Simple_repeat 2 38 0 1118 16 0 0 chr3 174814354 174814482 -43222676 - AluYa5/8 SINE Alu -2 309 182 329 250 30 40 chr3 174814690 174814790 -43222368 + MIR3 SINE MIR 15 113 -95 752 159 0 40 chr3 174815405 174815531 -43221627 - FLAM_A SINE Alu -12 121 1 262 268 71 63 chr3 174816037 174816164 -43220994 - MIR SINE MIR -63 145 18 985 262 55 76 chr3 174816851 174817432 -43219726 - MLT1G LTR MaLR -6 584 16 1355 218 82 79 chr3 174817855 174818278 -43218880 - MER77 LTR ERV1 -6 599 179 347 202 32 57 chr3 174819414 174819538 -43217620 + LTR67 LTR ERVL 429 549 -8 684 264 86 52 chr3 174821405 174821688 -43215470 + MLT1C LTR MaLR 1 300 -167 1995 201 86 111 chr3 174821688 174822535 -43214623 + LTR1B LTR ERV1 1 826 0 684 264 86 52 chr3 174822535 174822600 -43214558 + MLT1C LTR MaLR 300 361 -106 2961 206 87 16 chr3 174822848 174823406 -43213752 + MER97a DNA MER1_type? 10 648 -246 2039 116 3 7 chr3 174823406 174823700 -43213458 - AluSp SINE Alu -20 293 1 2961 206 87 16 chr3 174823700 174823967 -43213191 + MER97a DNA MER1_type? 648 894 0 276 290 40 10 chr3 174824105 174824205 -43212953 - MER94 DNA DNA 0 134 32 328 108 15 31 chr3 174824296 174824361 -43212797 + L1P LINE L1 2851 2914 -3232 671 355 36 0 chr3 174825052 174825300 -43211858 + MIR SINE MIR 3 259 -3 238 292 15 0 chr3 174825486 174825551 -43211607 + L2 LINE L2 3248 3313 0 186 43 0 0 chr3 174825778 174825801 -43211357 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 900 242 76 30 chr3 174825812 174826142 -43211016 - LTR47B LTR ERVL -97 346 2 261 339 28 46 chr3 174826142 174826251 -43210907 + MIR SINE MIR 22 128 -134 595 346 123 27 chr3 174826675 174827262 -43209896 + L2 LINE L2 1988 2630 -684 359 291 78 35 chr3 174827573 174827714 -43209444 - L1MEd LINE L1 -5914 205 59 953 235 53 41 chr3 174827802 174828291 -43208867 - MER39 LTR ERV1 -5 651 6 1426 167 116 24 chr3 174828295 174828666 -43208492 - LTR37A LTR ERV1 -21 405 1 343 315 54 34 chr3 174828672 174828821 -43208337 + L2 LINE L2 3117 3268 -4 653 269 32 0 chr3 174829921 174830077 -43207081 - MER5B DNA MER1_type -17 161 1 245 339 28 100 chr3 174830502 174830821 -43206337 + L2 LINE L2 2927 3222 -50 21 0 0 0 chr3 174830837 174830858 -43206300 + AT_rich Low_complexity Low_complexity 1 21 0 724 255 27 54 chr3 174830862 174831121 -43206037 - MIR SINE MIR 0 262 11 261 0 0 0 chr3 174831165 174831194 -43205964 + (TG)n Simple_repeat Simple_repeat 2 30 0 2133 184 118 0 chr3 174831556 174832006 -43205152 - MLT1D LTR MaLR 0 505 3 1732 167 47 39 chr3 174833046 174833430 -43203728 + MLT1B LTR MaLR 1 387 -3 336 333 23 23 chr3 174833435 174833609 -43203549 + MLT1I LTR MaLR 195 368 -41 188 328 66 0 chr3 174833634 174833695 -43203463 - MIR SINE MIR -110 152 88 300 318 151 22 chr3 174833980 174834159 -43202999 + MIR SINE MIR 29 230 -32 306 242 176 33 chr3 174834766 174834919 -43202239 + HAL1b LINE L1 61 235 -1113 2629 160 29 97 chr3 174834919 174835639 -43201519 + L1MA9 LINE L1 5593 6263 -49 443 309 77 24 chr3 174835696 174836032 -43201126 + HAL1b LINE L1 292 645 -703 1237 248 93 85 chr3 174836403 174836522 -43200636 + L1MC5 LINE L1 6542 6659 -1302 1763 132 135 0 chr3 174836522 174836840 -43200318 + MER46B DNA MER2_type 1 236 0 1237 248 93 85 chr3 174836840 174837693 -43199465 + L1MC5 LINE L1 6659 7537 -424 2093 238 68 33 chr3 174837708 174838430 -43198728 + L1MD2 LINE L1 5488 6234 -125 2707 243 45 32 chr3 174838458 174839239 -43197919 - MER21B LTR ERV1 -54 809 19 363 250 0 0 chr3 174839261 174839337 -43197821 - MER21B LTR ERV1 -773 90 15 296 282 73 0 chr3 174839355 174839465 -43197693 + L1MD3 LINE L1 7869 7986 -9 240 317 67 8 chr3 174839581 174839701 -43197457 + L1ME3A LINE L1 5988 6114 -56 185 276 35 0 chr3 174840853 174840911 -43196247 + L2 LINE L2 1161 1220 -2094 2574 10 0 42 chr3 174841079 174841387 -43195771 + AluYa5 SINE Alu 1 295 -16 215 193 24 145 chr3 174842035 174842118 -43195040 + L2 LINE L2 3161 3233 -39 193 156 10 73 chr3 174842271 174842367 -43194791 + C-rich Low_complexity Low_complexity 2 91 0 459 97 21 21 chr3 174842392 174842485 -43194673 + (CCCCCT)n Simple_repeat Simple_repeat 5 97 0 536 104 9 28 chr3 174842749 174842855 -43194303 + (TCC)n Simple_repeat Simple_repeat 2 105 0 251 191 0 0 chr3 174842872 174842914 -43194244 - Tigger3(Golem) DNA MER2_type -1249 1780 1739 2477 137 83 13 chr3 174842914 174843374 -43193784 - L1PA16 LINE L1 0 6166 5675 6095 123 10 27 chr3 174844503 174845450 -43191708 - L1P LINE L1 -2365 3781 2839 567 103 0 0 chr3 174845450 174845537 -43191621 - Alu SINE Alu -3 308 222 6095 123 10 27 chr3 174845537 174845847 -43191311 - L1P LINE L1 -3307 2839 2525 445 234 198 6 chr3 174846546 174846713 -43190445 - MIR SINE MIR -3 259 61 289 373 37 0 chr3 174846817 174846951 -43190207 - MIR SINE MIR -55 207 69 478 251 123 47 chr3 174847094 174847305 -43189853 + MIR SINE MIR 29 255 -7 647 157 107 0 chr3 174847524 174847645 -43189513 + AluJo SINE Alu 1 134 -178 528 309 86 51 chr3 174850974 174851407 -43185751 - LTR33 LTR ERVL -57 464 17 1615 178 44 35 chr3 174852676 174853019 -43184139 + MER7A DNA MER2_type 1 344 -2 208 95 24 24 chr3 174853216 174853258 -43183900 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 376 77 0 0 chr3 174853670 174853722 -43183436 + Alu SINE Alu 1 52 -250 1135 121 0 18 chr3 174853730 174853895 -43183263 - AluSx SINE Alu -150 162 1 2184 99 0 3 chr3 174854130 174854443 -43182715 + AluSg SINE Alu 1 312 0 964 314 53 41 chr3 174854726 174855310 -43181848 - L2 LINE L2 -16 3297 2703 338 335 40 7 chr3 174855345 174855539 -43181619 - MLT1J LTR MaLR -79 536 239 2806 202 79 44 chr3 174855642 174856775 -43180383 + L1ME2 LINE L1 4930 6164 0 922 289 110 40 chr3 174856792 174857481 -43179677 - L2 LINE L2 -616 2698 358 398 236 19 47 chr3 174857460 174857566 -43179592 + L2 LINE L2 270 372 -2942 * 512 305 137 15 chr3 174857560 174857822 -43179336 - L2 LINE L2 -2933 381 88 2323 51 0 4 chr3 174858458 174858731 -43178427 - AluY SINE Alu -6 305 34 1443 318 72 66 chr3 174858988 174859971 -43177187 + L3 LINE CR1 441 1433 -144 3661 133 58 31 chr3 174859971 174860088 -43177070 - MER39 LTR ERV1 0 707 595 2217 105 7 0 chr3 174860088 174860392 -43176766 - AluSx SINE Alu -1 311 6 3661 133 58 31 chr3 174860392 174860959 -43176199 - MER39 LTR ERV1 -112 595 4 1443 318 72 66 chr3 174860959 174861068 -43176090 + L3 LINE CR1 1433 1540 -37 313 359 21 7 chr3 174861052 174861194 -43175964 + MIR SINE MIR 49 192 -70 * 194 184 79 66 chr3 174861232 174861308 -43175850 + MIR3 SINE MIR 125 201 -7 641 253 6 22 chr3 174861547 174861725 -43175433 + MER5B DNA MER1_type 1 175 -3 2237 109 3 0 chr3 174861864 174862158 -43175000 - AluSx SINE Alu -17 295 1 216 0 0 0 chr3 174862905 174862929 -43174229 + (CA)n Simple_repeat Simple_repeat 2 25 0 23 33 0 0 chr3 174863417 174863447 -43173711 + AT_rich Low_complexity Low_complexity 1 30 0 1868 142 69 28 chr3 174863454 174863814 -43173344 - THE1C LTR MaLR 0 375 1 397 328 99 20 chr3 174863828 174864029 -43173129 + L2 LINE L2 3054 3270 -2 356 333 58 19 chr3 174864811 174864967 -43172191 + MIR SINE MIR 95 256 -6 285 51 0 0 chr3 174866608 174866647 -43170511 + (CA)n Simple_repeat Simple_repeat 1 39 0 204 218 26 13 chr3 174867666 174867744 -43169414 + CT-rich Low_complexity Low_complexity 3 81 0 288 120 0 0 chr3 174869345 174869395 -43167763 + (GA)n Simple_repeat Simple_repeat 1 50 0 610 259 69 6 chr3 174869504 174869678 -43167480 + MIR SINE MIR 8 192 -70 284 318 103 15 chr3 174869864 174870073 -43167085 - MIR SINE MIR -14 248 20 232 135 0 0 chr3 174870177 174870214 -43166944 - L2 LINE L2 -93 3220 3184 1021 299 57 47 chr3 174870956 174871445 -43165713 - MLT1K LTR MaLR -7 581 88 227 237 11 21 chr3 174871674 174871767 -43165391 + Charlie8 DNA MER1_type 55 146 -2271 246 303 26 0 chr3 174873759 174873835 -43163323 - MER69 DNA AcHobo -2 2524 2447 * 371 215 177 46 chr3 174873829 174873959 -43163199 - MER69 DNA AcHobo -1079 147 1 1736 114 164 6 chr3 174874391 174874715 -43162443 + THE1C LTR MaLR 1 375 0 512 293 115 30 chr3 174876101 174876405 -43160753 - MER102a DNA MER1_type 0 330 1 1868 112 36 18 chr3 174877650 174877926 -43159232 + AluSx SINE Alu 19 299 -13 253 208 75 0 chr3 174879036 174879089 -43158069 - L2 LINE L2 0 3272 3216 * 491 258 103 6 chr3 174879057 174879213 -43157945 - MIR SINE MIR -19 243 74 332 250 68 68 chr3 174880096 174880228 -43156930 + MIR SINE MIR 125 256 -6 2191 103 0 3 chr3 174881185 174881505 -43155653 + AluSx SINE Alu 1 312 0 2325 108 19 63 chr3 174882423 174882851 -43154307 + L1MA1 LINE L1 5888 6296 -6 492 259 45 0 chr3 174883071 174883183 -43153975 - L2 LINE L2 0 3272 3156 200 247 32 75 chr3 174883484 174883577 -43153581 - MER5C DNA MER1_type -234 90 2 24 53 0 0 chr3 174884363 174884401 -43152757 + AT_rich Low_complexity Low_complexity 1 38 0 219 293 32 68 chr3 174884409 174884505 -43152653 + MER5B DNA MER1_type 23 124 -65 2106 103 3 0 chr3 174884505 174884787 -43152371 - AluSg SINE Alu -6 304 22 219 293 32 68 chr3 174884787 174884850 -43152308 + MER5B DNA MER1_type 124 188 -1 36 23 0 0 chr3 174887838 174887881 -43149277 + AT_rich Low_complexity Low_complexity 1 43 0 270 325 139 26 chr3 174890361 174890512 -43146646 + L3 LINE CR1 343 510 -1067 1969 122 31 0 chr3 174890647 174890933 -43146225 + AluSq SINE Alu 6 300 -13 282 260 48 103 chr3 174890965 174891111 -43146047 + L3 LINE CR1 1426 1563 -14 183 216 0 0 chr3 174891161 174891198 -43145960 - L2 LINE L2 0 3313 3277 1099 243 75 46 chr3 174891774 174892087 -43145071 - MLT1J1 LTR MaLR -18 428 99 2623 107 6 3 chr3 174892087 174892450 -43144708 + THE1B LTR MaLR 1 364 0 1099 243 75 46 chr3 174892450 174892552 -43144606 - MLT1J1 LTR MaLR -347 99 1 398 288 0 9 chr3 174892691 174892802 -43144356 - LTR67 LTR ERVL -20 537 428 186 227 91 0 chr3 174893487 174893531 -43143627 + MIR SINE MIR 106 153 -55 22 56 0 0 chr3 174894424 174894460 -43142698 + AT_rich Low_complexity Low_complexity 1 36 0 380 284 213 28 chr3 174894812 174895248 -43141910 - L1ME4a LINE L1 -56 6065 5549 376 321 124 15 chr3 174895802 174896067 -43141091 - L1ME4a LINE L1 -1341 4805 4512 2377 80 0 10 chr3 174896158 174896457 -43140701 - AluSx SINE Alu -15 297 2 515 58 0 81 chr3 174896511 174896598 -43140560 - AluSp/q SINE Alu -12 301 222 267 309 17 17 chr3 174896628 174896809 -43140349 - L1ME4a LINE L1 -1788 4358 4178 336 360 93 17 chr3 174896892 174897248 -43139910 - L1ME4a LINE L1 -2318 3828 3446 25 65 0 0 chr3 174897353 174897399 -43139759 + AT_rich Low_complexity Low_complexity 1 46 0 2073 130 0 26 chr3 174897492 174897799 -43139359 - AluSx SINE Alu -13 299 1 23 0 0 0 chr3 174898610 174898633 -43138525 + AT_rich Low_complexity Low_complexity 1 23 0 407 317 10 0 chr3 174898780 174898884 -43138274 - L2 LINE L2 0 3272 3168 6018 113 9 2 chr3 174899070 174900261 -43136897 - L1PA15 LINE L1 -8 6157 4964 202 150 25 0 chr3 174900288 174900328 -43136830 + T-rich Low_complexity Low_complexity 2 42 0 29 47 0 0 chr3 174900493 174900536 -43136622 + AT_rich Low_complexity Low_complexity 1 43 0 722 261 60 40 chr3 174900586 174900835 -43136323 - MIR SINE MIR -1 261 8 29 47 0 0 chr3 174901265 174901308 -43135850 + AT_rich Low_complexity Low_complexity 1 43 0 1845 112 41 4 chr3 174901478 174901745 -43135413 + AluSp SINE Alu 21 297 -16 1010 287 139 39 chr3 174901920 174902409 -43134749 + L2 LINE L2 2377 2815 -498 261 0 0 0 chr3 174902409 174902438 -43134720 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1010 287 139 39 chr3 174902438 174902768 -43134390 + L2 LINE L2 2815 3313 0 912 262 117 69 chr3 174903156 174904580 -43132578 + L1MC5 LINE L1 5786 7255 -737 666 240 84 118 chr3 174904677 174905352 -43131806 + L1MC5 LINE L1 7262 7913 -48 232 301 14 0 chr3 174905610 174905683 -43131475 + MIR SINE MIR 153 226 -36 1937 98 0 47 chr3 174908163 174908437 -43128721 + AluSg SINE Alu 26 286 -24 225 0 0 0 chr3 174908438 174908463 -43128695 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 608 193 30 7 chr3 174909173 174909308 -43127850 - MER114 LTR ERV -456 192 55 4032 143 25 34 chr3 174909317 174909494 -43127664 - L1MA9 LINE L1 -19 6293 6116 2251 97 10 7 chr3 174909494 174909794 -43127364 + AluSq SINE Alu 1 301 -12 4032 143 25 34 chr3 174909794 174910129 -43127029 - L1MA9 LINE L1 -196 6116 5788 369 0 0 0 chr3 174910129 174910170 -43126988 + (TG)n Simple_repeat Simple_repeat 2 42 0 4032 143 25 34 chr3 174910170 174910423 -43126735 - L1MA9 LINE L1 -524 5788 5534 208 306 45 18 chr3 174910465 174910576 -43126582 - MIR SINE MIR -147 115 2 1165 250 25 35 chr3 174910769 174911137 -43126021 + L2 LINE L2 2949 3312 -1 23 54 0 0 chr3 174911797 174911834 -43125324 + AT_rich Low_complexity Low_complexity 1 37 0 1353 163 4 50 chr3 174913116 174913374 -43123784 - AluJo SINE Alu -4 308 63 956 271 29 0 chr3 174914095 174914335 -43122823 - MIR SINE MIR -11 251 5 1953 121 184 11 chr3 174914506 174914871 -43122287 + MSTA LTR MaLR 1 428 0 556 211 9 18 chr3 174915757 174915871 -43121287 - MER81 DNA DNA -1 113 1 478 213 148 16 chr3 174915991 174916113 -43121045 - MIR SINE MIR -94 168 31 288 263 0 0 chr3 174916439 174916496 -43120662 + polypurine Low_complexity Low_complexity 2 58 0 302 150 0 17 chr3 174916502 174916562 -43120596 + (GGGA)n Simple_repeat Simple_repeat 3 61 0 2393 44 0 0 chr3 174916864 174917158 -43120000 - L1PA2 LINE L1 0 6155 5862 307 273 45 38 chr3 174917168 174917300 -43119858 - L1ME4a LINE L1 -202 5919 5787 269 256 49 12 chr3 174917562 174917644 -43119514 - MARNA DNA Mariner -17 569 485 521 273 104 28 chr3 174918664 174918856 -43118302 - MIR SINE MIR -16 246 45 518 155 82 0 chr3 174919200 174919297 -43117861 + MER63 DNA MER1_type 1 731 -331 398 209 88 0 chr3 174919304 174919395 -43117763 + MER63 DNA MER1_type 963 1061 0 307 234 262 0 chr3 174919395 174919536 -43117622 - MIR SINE MIR -2 260 83 203 382 49 0 chr3 174919722 174919845 -43117313 + L2 LINE L2 3182 3310 -3 321 260 35 70 chr3 174919931 174920158 -43117000 + L1ME LINE L1 5605 5823 -298 530 322 111 0 chr3 174920230 174920429 -43116729 + MIR SINE MIR 12 232 -30 3152 194 10 18 chr3 174920535 174921246 -43115912 - L1PA16 LINE L1 -957 5189 4485 * 5323 125 61 5 chr3 174921243 174922158 -43115000 + L1PA16 LINE L1 5202 6166 0 21 0 0 0 chr3 174922296 174922317 -43114841 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr3 174924521 174924551 -43112607 + AT_rich Low_complexity Low_complexity 1 30 0 489 195 142 0 chr3 174924869 174924982 -43112176 + MER94 DNA DNA 1 129 -5 899 303 73 24 chr3 174925200 174925622 -43111536 - MLT1J2 LTR MaLR -1 449 7 2764 207 17 3 chr3 174926521 174927096 -43110062 - L1MD3 LINE L1 -9 7986 7404 1036 288 67 22 chr3 174927393 174927844 -43109314 + MLT1L LTR MaLR 143 613 -2 1215 248 36 28 chr3 174927870 174928184 -43108974 - L1ME4a LINE L1 -376 5794 5475 1887 73 22 112 chr3 174928184 174928498 -43108660 - AluYb8 SINE Alu 0 318 33 1215 248 36 28 chr3 174928498 174928542 -43108616 - L1ME4a LINE L1 -695 5475 5433 21 36 0 0 chr3 174928549 174928577 -43108581 + AT_rich Low_complexity Low_complexity 1 28 0 3054 91 23 14 chr3 174929149 174929587 -43107571 - MLT2A1 LTR ERVL -2 442 1 20078 65 6 1 chr3 174929587 174932080 -43105078 - HERVL-A1 LTR ERVL 0 5654 3148 717 36 0 0 chr3 174932160 174932243 -43104915 - HERVL-A1 LTR ERVL -2510 3144 3062 637 181 9 9 chr3 174932951 174933067 -43104091 + MLT1A1 LTR MaLR 1 116 -249 1348 159 9 4 chr3 174933261 174933494 -43103664 + MLT1A1 LTR MaLR 132 365 0 226 362 158 0 chr3 174933785 174933962 -43103196 + MIR SINE MIR 53 257 -5 2100 139 0 0 chr3 174933963 174934265 -43102893 - AluSx SINE Alu -8 304 3 370 125 0 115 chr3 174934554 174934650 -43102508 - L1PA11 LINE L1 0 6174 6090 202 383 28 19 chr3 174935203 174935310 -43101848 - L2 LINE L2 -23 3290 3183 539 279 67 87 chr3 174936394 174936653 -43100505 - L1MC4a LINE L1 -1892 5916 5653 2739 175 41 9 chr3 174936653 174937195 -43099963 - MER89 LTR ERV1 0 559 1 539 279 67 87 chr3 174937195 174937534 -43099624 - L1MC4a LINE L1 -2155 5653 5330 822 274 37 22 chr3 174938961 174939202 -43097956 - MIR SINE MIR -1 261 15 265 272 102 61 chr3 174939646 174939793 -43097365 - MIR SINE MIR -58 204 52 208 328 184 5 chr3 174940185 174940386 -43096772 + MIR SINE MIR 20 256 -6 781 204 55 45 chr3 174941075 174941276 -43095882 - MER3 DNA MER1_type 0 209 7 580 270 51 43 chr3 174941812 174942035 -43095123 + MIR SINE MIR 31 254 -8 181 197 28 0 chr3 174942174 174942245 -43094913 + (CA)n Simple_repeat Simple_repeat 2 74 0 228 333 22 22 chr3 174943936 174944071 -43093087 + L2 LINE L2 2165 2299 -1015 898 238 146 56 chr3 174944076 174944522 -43092636 - LTR16C LTR ERVL 0 491 6 252 341 123 14 chr3 174944686 174944897 -43092261 + L2 LINE L2 2508 2741 -573 432 305 143 19 chr3 174945039 174945298 -43091860 + L2 LINE L2 3019 3309 -4 * 532 343 69 0 chr3 174945297 174945472 -43091686 - MIR SINE MIR -56 206 20 311 274 0 0 chr3 174946367 174946451 -43090707 + MIR SINE MIR 179 262 0 240 86 0 0 chr3 174946544 174946579 -43090579 + (CA)n Simple_repeat Simple_repeat 1 35 0 1671 241 140 39 chr3 174947481 174947937 -43089221 - L1ME1 LINE L1 -18 6148 5609 1832 135 4 7 chr3 174947937 174948211 -43088947 - AluSx SINE Alu -2 310 38 1671 241 140 39 chr3 174948211 174948389 -43088769 - L1ME1 LINE L1 -557 5609 5450 7384 37 2 0 chr3 174948396 174950074 -43087084 - L1PA4 LINE L1 -2 6153 4471 5064 39 5 0 chr3 174950074 174950696 -43086462 + L1PA4 LINE L1 3817 4441 -1705 1180 281 122 7 chr3 174951099 174951758 -43085400 - L2 LINE L2 -7 3306 2565 282 234 29 97 chr3 174952223 174952398 -43084760 + Charlie4 DNA MER1_type 581 743 -1218 518 330 49 15 chr3 174952724 174952988 -43084170 + Charlie2 DNA MER1_type 36 308 -2474 1533 217 114 15 chr3 174953035 174953647 -43083511 + Charlie2 DNA MER1_type 1866 2538 -324 561 291 44 19 chr3 174953649 174953920 -43083238 - L1MCc LINE L1 -4908 1515 1238 21 36 0 0 chr3 174954750 174954778 -43082380 + AT_rich Low_complexity Low_complexity 1 28 0 884 231 16 16 chr3 174954834 174955085 -43082073 + Charlie2 DNA MER1_type 2594 2844 -18 627 299 77 5 chr3 174956082 174956289 -43080869 - MIR SINE MIR -26 236 15 2100 101 42 0 chr3 174957099 174957387 -43079771 + AluSp SINE Alu 1 300 -13 244 91 0 0 chr3 174957396 174957429 -43079729 + L1MC3 LINE L1 6720 6752 -1033 3075 175 12 3 chr3 174957443 174958010 -43079148 + L1MC3 LINE L1 7214 7785 0 2094 82 67 0 chr3 174958015 174958297 -43078861 + AluSg1 SINE Alu 1 301 -8 291 71 0 0 chr3 174958595 174958637 -43078521 + (TC)n Simple_repeat Simple_repeat 1 42 0 2032 138 20 0 chr3 174958960 174959264 -43077894 + AluSx SINE Alu 1 310 -2 23 33 0 0 chr3 174959317 174959347 -43077811 + AT_rich Low_complexity Low_complexity 1 30 0 265 287 109 0 chr3 174960436 174960537 -43076621 + MIR SINE MIR 82 193 -69 298 364 101 0 chr3 174962427 174962625 -43074533 + MIR SINE MIR 34 251 -11 331 320 84 39 chr3 174962726 174962904 -43074254 + MIR3 SINE MIR 9 194 -14 21 0 0 0 chr3 174963618 174963639 -43073519 + AT_rich Low_complexity Low_complexity 1 21 0 831 246 9 9 chr3 174963685 174963917 -43073241 - L1MA9 LINE L1 -38 6274 6043 33 0 0 0 chr3 174964037 174964070 -43073088 + AT_rich Low_complexity Low_complexity 1 33 0 296 234 0 0 chr3 174964319 174964387 -43072771 - MIR SINE MIR -67 141 87 43 35 0 0 chr3 174964589 174964646 -43072512 + AT_rich Low_complexity Low_complexity 1 57 0 349 193 121 50 chr3 174964803 174964943 -43072215 - MIR3 SINE MIR -9 199 50 256 367 16 8 chr3 174965263 174965391 -43071767 + L2 LINE L2 2844 2972 -342 1481 205 89 21 chr3 174965417 174965798 -43071360 - L1MD2 LINE L1 -13 6346 5940 425 169 54 46 chr3 174965897 174966027 -43071131 - MER113 DNA MER1_type? -387 134 4 1253 27 0 0 chr3 174966223 174966371 -43070787 + L1PA4 LINE L1 6005 6152 -3 200 194 0 0 chr3 174968230 174968266 -43068892 + (CA)n Simple_repeat Simple_repeat 2 37 0 1265 27 0 0 chr3 174969001 174969147 -43068011 - L1P1 LINE L1 -474 5681 5536 1092 8 0 0 chr3 174969147 174969268 -43067890 + L1PA2 LINE L1 6030 6153 -2 236 291 47 55 chr3 174970776 174970903 -43066255 - L2 LINE L2 0 3313 3188 226 279 117 54 chr3 174971391 174971502 -43065656 - L2 LINE L2 -295 2977 2860 2357 86 3 3 chr3 174971969 174972273 -43064885 - AluSc SINE Alu -4 305 2 313 337 45 40 chr3 174972409 174972611 -43064547 + MIR SINE MIR 50 252 -10 989 240 27 37 chr3 174973287 174973603 -43063555 - L1ME1 LINE L1 -3 6163 5880 2577 265 110 31 chr3 174974047 174975330 -43061828 - L2 LINE L2 -24 3289 1915 266 214 0 18 chr3 174977537 174977593 -43059565 + L2 LINE L2 3255 3309 -4 395 171 40 0 chr3 174978548 174978624 -43058534 + L2 LINE L2 3195 3273 -40 2374 167 9 32 chr3 174979010 174979446 -43057712 - MSTB LTR MaLR 0 426 1 436 285 55 24 chr3 174979448 174979613 -43057545 + MIR SINE MIR 3 172 -90 1928 79 4 23 chr3 174980197 174980462 -43056696 + AluSp SINE Alu 39 298 -15 29 0 0 0 chr3 174982303 174982332 -43054826 + AT_rich Low_complexity Low_complexity 1 29 0 269 358 8 45 chr3 174982991 174983125 -43054033 + MIR3 SINE MIR 10 138 -70 954 255 186 41 chr3 174983140 174983523 -43053635 + L2 LINE L2 2691 3176 -137 2251 215 47 52 chr3 174983523 174984080 -43053078 + MLT2B3 LTR ERVL 1 554 0 954 255 186 41 chr3 174984080 174984242 -43052916 + L2 LINE L2 3176 3313 0 221 395 34 8 chr3 174984250 174984369 -43052789 - L2 LINE L2 -17 3255 3134 1780 163 48 9 chr3 174984653 174984984 -43052174 + MER2 DNA MER2_type 1 344 0 276 177 143 19 chr3 174985444 174985653 -43051505 + Zaphod DNA AcHobo 754 988 -3043 1194 223 19 72 chr3 174985654 174986013 -43051145 + MER58B DNA MER1_type 2 341 0 22 35 0 0 chr3 174986076 174986105 -43051053 + AT_rich Low_complexity Low_complexity 1 29 0 3318 169 46 36 chr3 174986369 174987084 -43050074 - L1MA7 LINE L1 -28 6263 5542 609 198 31 52 chr3 174987139 174987331 -43049827 + Zaphod DNA AcHobo 3836 4023 -8 189 293 67 13 chr3 174987728 174987803 -43049355 + MIR SINE MIR 63 141 -121 * 407 351 64 64 chr3 174987788 174987867 -43049291 - L2 LINE L2 -4 3268 3190 1328 202 6 28 chr3 174987867 174988194 -43048964 + MER33 DNA MER1_type 5 324 0 407 351 64 64 chr3 174988194 174988487 -43048671 - L2 LINE L2 -81 3191 2896 2099 66 41 7 chr3 174988507 174988809 -43048349 + AluSc SINE Alu 1 311 0 2254 113 0 3 chr3 174992261 174992571 -43044587 - AluSx SINE Alu -3 309 1 600 299 98 29 chr3 174993672 174993916 -43043242 - MIR SINE MIR 0 262 2 751 198 35 91 chr3 174994469 174994645 -43042513 + L2 LINE L2 2436 2597 -717 1855 153 33 10 chr3 174994645 174994946 -43042212 - AluSx SINE Alu -4 308 1 751 198 35 91 chr3 174994946 174995001 -43042157 + L2 LINE L2 2597 2654 -660 411 272 7 52 chr3 174995003 174995139 -43042019 - MLT1I LTR MaLR -188 221 92 7577 29 0 0 chr3 174995159 174996284 -43040874 - L1PA3 LINE L1 -3 6152 5027 17672 58 9 3 chr3 174996409 174999245 -43037913 - L1PA8 LINE L1 -113 6059 3198 1810 167 13 19 chr3 174999457 174999768 -43037390 + AluSx SINE Alu 3 311 -1 4521 56 14 0 chr3 174999888 175000456 -43036702 - L1PA7 LINE L1 -5 6149 5574 2831 79 5 33 chr3 175000456 175000884 -43036274 + L1P LINE L1 4387 4802 -1344 568 248 24 114 chr3 175001765 175002011 -43035147 - MER58A DNA MER1_type 0 224 1 637 310 70 28 chr3 175002425 175003112 -43034046 + L1MC/D LINE L1 4301 5016 -1130 207 179 0 0 chr3 175003231 175003270 -43033888 + (TG)n Simple_repeat Simple_repeat 1 39 0 25 0 0 0 chr3 175003463 175003488 -43033670 + AT_rich Low_complexity Low_complexity 1 25 0 470 323 60 15 chr3 175003534 175003803 -43033355 + L1MC/D LINE L1 5453 5733 -2075 535 196 20 166 chr3 175004000 175004403 -43032755 + LTR37A LTR ERV1 74 417 -9 32 26 0 0 chr3 175004801 175004840 -43032318 + AT_rich Low_complexity Low_complexity 1 39 0 443 351 28 18 chr3 175005925 175006125 -43031033 - MIR3 SINE MIR -1 207 1 15505 30 1 2 chr3 175006490 175009103 -43028055 - L1PA3 LINE L1 0 6155 3544 311 269 13 0 chr3 175209176 175209254 -42827904 - MLT1I LTR MaLR -311 98 20 24 32 0 0 chr3 175209260 175209291 -42827867 + AT_rich Low_complexity Low_complexity 1 31 0 184 309 48 0 chr3 175209735 175209819 -42827339 - MIR SINE MIR -50 212 125 221 208 125 0 chr3 175210852 175210900 -42826258 + L2 LINE L2 3204 3257 -15 236 236 67 56 chr3 175211535 175211624 -42825534 + MIR SINE MIR 158 247 -15 359 301 113 31 chr3 175213194 175213423 -42823735 + L2 LINE L2 3059 3306 -7 1994 166 48 8 chr3 175213689 175214081 -42823077 + MSTA LTR MaLR 21 428 0 417 39 0 0 chr3 175214333 175214384 -42822774 + (CA)n Simple_repeat Simple_repeat 2 52 0 348 341 85 0 chr3 175216235 175216399 -42820759 + MIR SINE MIR 85 262 0 374 177 13 0 chr3 175216411 175216490 -42820668 - MER116 DNA Mariner 0 80 1 228 163 0 0 chr3 175216644 175216687 -42820471 + (TCTA)n Simple_repeat Simple_repeat 1 43 0 1228 232 20 20 chr3 175217439 175217793 -42819365 - MLT1A1 LTR MaLR -11 354 1 871 262 58 9 chr3 175217967 175218192 -42818966 + MIR SINE MIR 25 260 -2 1017 120 0 0 chr3 175218319 175218452 -42818706 + AluSq/x SINE Alu 1 133 -179 267 224 52 0 chr3 175218990 175219048 -42818110 + L2 LINE L2 3250 3310 -3 23 54 0 0 chr3 175219369 175219406 -42817752 + AT_rich Low_complexity Low_complexity 1 37 0 212 328 60 0 chr3 175219797 175219864 -42817294 + MIR SINE MIR 5 75 -187 240 319 0 0 chr3 175219882 175219951 -42817207 + MIR SINE MIR 179 247 -15 389 295 111 5 chr3 175219991 175220181 -42816977 + HAL1 LINE L1 12 221 -2286 35 63 0 0 chr3 175220548 175220611 -42816547 + AT_rich Low_complexity Low_complexity 1 63 0 976 271 50 38 chr3 175220808 175221229 -42815929 + L1ME3A LINE L1 5525 5950 -220 247 282 0 0 chr3 175221496 175221574 -42815584 + L2 LINE L2 2633 2710 -604 282 103 0 0 chr3 175221582 175221621 -42815537 + tRNA-Ile-ATT tRNA tRNA 1 39 -38 2112 108 13 3 chr3 175221800 175222106 -42815052 - AluSp SINE Alu -4 309 1 698 271 96 4 chr3 175222111 175222340 -42814818 + L2 LINE L2 2892 3141 -172 240 91 0 0 chr3 175222340 175222373 -42814785 - Alu SINE Alu -268 33 1 1176 98 0 0 chr3 175222388 175222541 -42814617 + AluSg/x SINE Alu 154 306 -6 195 322 98 23 chr3 175222762 175222936 -42814222 + L2 LINE L2 2462 2648 -666 1658 225 82 77 chr3 175222955 175223247 -42813911 - L2 LINE L2 -270 3043 2754 2320 107 7 3 chr3 175223247 175223556 -42813602 - AluSg SINE Alu 0 310 1 1658 225 82 77 chr3 175223556 175223908 -42813250 - L2 LINE L2 -559 2754 2403 13827 212 25 19 chr3 175223966 175226351 -42810807 - L1PA16 LINE L1 -302 7302 4933 2024 130 0 34 chr3 175226351 175226371 -42810787 - AluSx SINE Alu 0 312 293 234 0 0 0 chr3 175226371 175226397 -42810761 + (ATG)n Simple_repeat Simple_repeat 2 27 0 2024 130 0 34 chr3 175226397 175226699 -42810459 - AluSx SINE Alu -19 293 1 13827 212 25 19 chr3 175226699 175227423 -42809735 - L1PA16 LINE L1 -2671 4933 4215 596 51 0 13 chr3 175227423 175227501 -42809657 - MADE1 DNA Mariner 0 80 4 13827 212 25 19 chr3 175227501 175229486 -42807672 - L1PA16 LINE L1 -3389 4215 2182 739 321 30 8 chr3 175230299 175230698 -42806460 - L1PA16 LINE L1 -7167 414 7 624 95 54 0 chr3 175230704 175230809 -42806349 - LTR54B LTR ERV1 -400 110 1 * 3022 128 24 0 chr3 175230809 175231268 -42805890 + MER1A DNA MER1_type 60 529 0 521 118 24 12 chr3 175231445 175231530 -42805628 - 5S rRNA rRNA -31 90 5 259 220 15 114 chr3 175231536 175231588 -42805570 - L1M4 LINE L1 -3887 2259 2203 2161 111 3 0 chr3 175231588 175231876 -42805282 - AluSq SINE Alu -20 293 5 259 220 15 114 chr3 175231876 175231955 -42805203 - L1M4 LINE L1 -3943 2203 2141 316 326 87 12 chr3 175231968 175232051 -42805107 - L1M4 LINE L1 -1604 4542 4467 1727 162 34 7 chr3 175232051 175232348 -42804810 - AluSg SINE Alu -5 305 1 316 326 87 12 chr3 175232348 175232436 -42804722 - L1M4 LINE L1 -1679 4467 4358 476 301 17 39 chr3 175232722 175232819 -42804339 - L1M4 LINE L1 -1931 4215 4117 2325 94 0 10 chr3 175232819 175233117 -42804041 - AluSc SINE Alu -14 295 1 476 301 17 39 chr3 175233117 175233378 -42803780 - L1M4 LINE L1 -2029 4117 3865 661 274 94 16 chr3 175233580 175233835 -42803323 + L2 LINE L2 2953 3227 -86 6980 237 78 31 chr3 175233928 175234256 -42802902 + Charlie2a DNA MER1_type 53 364 -2498 1984 131 3 26 chr3 175234256 175234568 -42802590 - AluSq SINE Alu -8 305 1 6980 237 78 31 chr3 175234568 175234877 -42802281 + Charlie2a DNA MER1_type 364 657 -2205 2193 211 78 34 chr3 175234877 175235445 -42801713 - MLT1E LTR MaLR 0 593 1 6980 237 78 31 chr3 175235445 175235697 -42801461 + Charlie2a DNA MER1_type 657 896 -1966 2235 107 3 0 chr3 175235697 175235987 -42801171 + AluSp SINE Alu 1 291 -22 360 0 0 0 chr3 175235990 175236030 -42801128 + (CA)n Simple_repeat Simple_repeat 2 41 0 6980 237 78 31 chr3 175236030 175236309 -42800849 + Charlie2a DNA MER1_type 897 1162 -1700 7040 49 13 0 chr3 175236309 175237353 -42799805 - L1PA7 LINE L1 -3 6151 5100 6980 237 78 31 chr3 175237353 175238127 -42799031 + Charlie2a DNA MER1_type 1162 1898 -964 2220 106 7 0 chr3 175238127 175238419 -42798739 - AluSp SINE Alu -19 294 1 6980 237 78 31 chr3 175238419 175239125 -42798033 + Charlie2a DNA MER1_type 1898 2833 -29 972 218 19 29 chr3 175239804 175240180 -42796978 + MLT1C LTR MaLR 9 467 0 220 290 16 0 chr3 175240213 175240275 -42796883 + MIR SINE MIR 63 125 -137 1336 213 63 22 chr3 175240439 175240853 -42796305 + LTR37B LTR ERV1 38 468 0 675 149 41 0 chr3 175241903 175242024 -42795134 - L1M3 LINE L1 -385 5786 5661 875 73 24 0 chr3 175242024 175242147 -42795011 - L1PA11 LINE L1 -2 6172 6047 22 0 0 0 chr3 175242254 175242276 -42794882 + AT_rich Low_complexity Low_complexity 1 22 0 323 279 58 10 chr3 175242426 175242530 -42794628 - L2 LINE L2 0 3272 3164 467 270 62 52 chr3 175242809 175243020 -42794138 + LTR33 LTR ERVL 1 213 -308 622 209 128 12 chr3 175243071 175243243 -42793915 + LTR33 LTR ERVL 328 519 -2 771 56 0 9 chr3 175243330 175243438 -42793720 - L1MA1 LINE L1 0 6302 6196 253 285 17 28 chr3 175243450 175243629 -42793529 + (TGAA)n Simple_repeat Simple_repeat 1 177 0 286 269 62 39 chr3 175244498 175244628 -42792530 + L1ME LINE L1 5633 5765 -356 548 299 89 23 chr3 175244657 175244871 -42792287 - MIR SINE MIR -34 228 1 604 355 78 53 chr3 175245173 175246356 -42790802 - HERV16 LTR ERVL -3423 1573 362 326 313 33 30 chr3 175246855 175247075 -42790083 + L1ME LINE L1 5330 5550 -581 437 319 29 33 chr3 175247133 175247374 -42789784 + L1ME LINE L1 5553 5792 -329 21 0 0 0 chr3 175247642 175247663 -42789495 + AT_rich Low_complexity Low_complexity 1 21 0 299 222 12 62 chr3 175247897 175247978 -42789180 - L2 LINE L2 0 3272 3196 299 222 12 62 chr3 175248927 175249008 -42788150 - L2 LINE L2 0 3272 3196 530 157 101 0 chr3 175249473 175249562 -42787596 - AluJ SINE Alu -25 287 190 * 774 192 20 14 chr3 175249560 175249706 -42787452 - AluJ SINE Alu -165 147 1 23 0 0 0 chr3 175250932 175250955 -42786203 + AT_rich Low_complexity Low_complexity 1 23 0 993 188 132 16 chr3 175250955 175251274 -42785884 - LTR37A LTR ERV1 -21 405 50 242 125 153 28 chr3 175251567 175251639 -42785519 - MER53 DNA DNA 0 189 109 278 323 86 30 chr3 175252294 175252492 -42784666 - L2 LINE L2 -729 2585 2377 186 241 0 56 chr3 175252847 175252901 -42784257 + L2 LINE L2 3263 3313 0 32 0 0 0 chr3 175253690 175253722 -42783436 + AT_rich Low_complexity Low_complexity 1 32 0 487 285 104 72 chr3 175254293 175254808 -42782350 - L2 LINE L2 -234 3079 2476 380 241 160 21 chr3 175254880 175255067 -42782091 + MER65B LTR ERV1 1 213 -318 333 109 129 69 chr3 175255300 175255401 -42781757 + LTR37A LTR ERV1 319 425 -1 251 272 62 0 chr3 175255402 175255483 -42781675 - L2 LINE L2 -1467 1847 1762 208 222 19 19 chr3 175256048 175256102 -42781056 - MIR SINE MIR -114 148 95 184 309 48 0 chr3 175256188 175256272 -42780886 + MIR SINE MIR 125 212 -50 24 32 0 0 chr3 175257008 175257039 -42780119 + AT_rich Low_complexity Low_complexity 1 31 0 359 253 0 0 chr3 175257045 175257124 -42780034 + MLT1I LTR MaLR 20 98 -311 11060 135 19 8 chr3 175257243 175259076 -42778082 - Tigger1 DNA MER2_type -566 1852 1 1410 194 135 46 chr3 175259143 175259596 -42777562 - MLT1D LTR MaLR -12 493 1 492 183 11 0 chr3 175259698 175259791 -42777367 + MER94 DNA DNA 1 94 -40 358 201 93 147 chr3 175260367 175260571 -42776587 - L1MC4 LINE L1 -838 7204 7012 2223 106 0 0 chr3 175260600 175260892 -42776266 - AluSx SINE Alu -16 296 5 1964 155 0 7 chr3 175260900 175261203 -42775955 - AluSx SINE Alu -10 302 2 1146 203 60 0 chr3 175261203 175261484 -42775674 - L1MC4 LINE L1 -1026 7016 6719 1512 269 35 18 chr3 175261501 175262066 -42775092 - L1MC4 LINE L1 -1980 5828 5254 26 30 0 0 chr3 175262079 175262112 -42775046 + AT_rich Low_complexity Low_complexity 1 33 0 267 254 0 32 chr3 175262504 175262567 -42774591 + L2 LINE L2 3248 3308 -5 324 310 52 61 chr3 175262712 175262858 -42774300 + L1ME4a LINE L1 5777 5922 -199 1980 126 82 0 chr3 175262858 175263222 -42773936 + L1MA8 LINE L1 5898 6291 0 324 310 52 61 chr3 175263222 175263304 -42773854 + L1ME4a LINE L1 5922 6003 -118 2302 114 0 9 chr3 175263459 175263774 -42773384 - AluSq SINE Alu -1 312 1 468 269 41 14 chr3 175263937 175264082 -42773076 + MIR SINE MIR 111 259 -3 272 167 0 0 chr3 175264301 175264355 -42772803 - L1ME4a LINE L1 -8 6113 6060 1964 108 0 0 chr3 175264725 175264984 -42772174 + AluY SINE Alu 1 259 -52 226 216 40 40 chr3 175265014 175265088 -42772070 + L1MC4 LINE L1 7210 7283 -759 1684 127 4 0 chr3 175265116 175265375 -42771783 - MER2 DNA MER2_type -85 260 1 474 223 6 115 chr3 175265381 175265538 -42771620 - MER5A DNA MER1_type -40 149 10 1367 257 106 44 chr3 175265538 175266352 -42770806 + L1MC4 LINE L1 7012 7875 -167 234 128 0 0 chr3 175266402 175266441 -42770717 + (GA)n Simple_repeat Simple_repeat 2 40 0 205 161 0 0 chr3 175266534 175266565 -42770593 + (TG)n Simple_repeat Simple_repeat 2 32 0 222 174 0 0 chr3 175266576 175266622 -42770536 + GA-rich Low_complexity Low_complexity 1 46 0 318 285 24 8 chr3 175266778 175266901 -42770257 + L1MC4 LINE L1 7918 8042 0 292 219 0 0 chr3 175267098 175267162 -42769996 - MLT1J2 LTR MaLR -34 416 353 226 281 177 0 chr3 175267163 175267259 -42769899 - MIR SINE MIR -128 134 22 598 283 297 13 chr3 175267442 175267587 -42769571 - L2 LINE L2 -1 3312 3210 2477 91 0 0 chr3 175267587 175267895 -42769263 + AluSg SINE Alu 1 308 -2 598 283 297 13 chr3 175267895 175268418 -42768740 - L2 LINE L2 -103 3210 2433 2054 90 21 3 chr3 175268533 175268822 -42768336 - AluSc SINE Alu -15 294 1 243 0 0 0 chr3 175268824 175268851 -42768307 + (TG)n Simple_repeat Simple_repeat 2 28 0 256 231 11 55 chr3 175268893 175268984 -42768174 + MIR SINE MIR 120 206 -56 215 209 0 0 chr3 175269176 175269219 -42767939 + (TCTCTG)n Simple_repeat Simple_repeat 6 48 0 273 293 153 19 chr3 175269598 175269755 -42767403 - L2 LINE L2 -704 2610 2433 2329 85 3 0 chr3 175269871 175270164 -42766994 - AluSc SINE Alu -15 294 1 243 0 0 0 chr3 175270166 175270193 -42766965 + (TG)n Simple_repeat Simple_repeat 2 28 0 256 231 11 55 chr3 175270235 175270326 -42766832 + MIR SINE MIR 120 206 -56 215 209 0 0 chr3 175270518 175270561 -42766597 + (TCTCTG)n Simple_repeat Simple_repeat 6 48 0 1772 154 3 43 chr3 175270849 175271148 -42766010 + AluSx SINE Alu 1 287 -25 333 208 0 0 chr3 175271148 175271220 -42765938 + (TA)n Simple_repeat Simple_repeat 1 72 0 531 243 21 0 chr3 175271562 175271702 -42765456 + L1MA9 LINE L1 6132 6274 -38 33 16 7 0 chr3 175271725 175271810 -42765348 + AT_rich Low_complexity Low_complexity 1 40 0 297 197 0 0 chr3 175271915 175271976 -42765182 + (TG)n Simple_repeat Simple_repeat 2 62 0 1728 82 0 26 chr3 175272058 175272289 -42764869 + AluSg/x SINE Alu 78 302 -10 533 261 38 92 chr3 175273027 175273265 -42763893 + MIR SINE MIR 19 243 -19 200 389 72 18 chr3 175273723 175273890 -42763268 + L2 LINE L2 3019 3194 -78 192 77 0 0 chr3 175275434 175275460 -42761698 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 356 228 51 102 chr3 175276188 175276281 -42760877 + HAL1 LINE L1 5 101 -2406 2221 92 7 10 chr3 175276281 175276584 -42760574 + AluSg SINE Alu 1 302 -8 356 228 51 102 chr3 175276584 175276705 -42760453 + HAL1 LINE L1 101 208 -2299 270 0 0 0 chr3 175276823 175276853 -42760305 + (CA)n Simple_repeat Simple_repeat 2 31 0 758 292 86 63 chr3 175276873 175277582 -42759576 + HAL1 LINE L1 617 1341 -1166 794 256 65 69 chr3 175278230 175278780 -42758378 + L1MC4 LINE L1 7492 8039 -3 392 248 0 0 chr3 175279711 175279816 -42757342 - L1ME3A LINE L1 -13 6157 6053 208 211 0 0 chr3 175280734 175280772 -42756386 - MIR SINE MIR -9 253 216 21 0 0 0 chr3 175280834 175280855 -42756303 + AT_rich Low_complexity Low_complexity 1 21 0 21 89 0 0 chr3 175280885 175280941 -42756217 + AT_rich Low_complexity Low_complexity 1 56 0 180 219 0 0 chr3 175281010 175281051 -42756107 - L2 LINE L2 0 3313 3273 262 360 0 10 chr3 175281798 175281898 -42755260 + CT-rich Low_complexity Low_complexity 1 99 0 331 358 20 25 chr3 175281945 175282166 -42754992 + CT-rich Low_complexity Low_complexity 1 219 0 251 306 28 9 chr3 175282123 175282231 -42754927 + T-rich Low_complexity Low_complexity 4 113 0 * 317 248 73 9 chr3 175282474 175282583 -42754575 + MER94 DNA DNA 19 134 0 1520 178 22 25 chr3 175283714 175283989 -42753169 - AluJb SINE Alu -20 292 19 605 289 95 30 chr3 175284436 175284534 -42752624 + MIR SINE MIR 15 105 -157 1827 138 7 4 chr3 175284534 175284810 -42752348 + AluSg SINE Alu 1 277 -33 2180 46 0 8 chr3 175284810 175285095 -42752063 + AluY SINE Alu 25 309 0 605 289 95 30 chr3 175285095 175285226 -42751932 + MIR SINE MIR 104 261 -1 298 318 53 13 chr3 175285244 175285395 -42751763 + MER117 DNA MER1_type 2 158 -39 230 336 74 5 chr3 175286135 175286292 -42750866 - L2 LINE L2 -14 3258 3015 242 213 185 0 chr3 175287057 175287165 -42749993 + L1 LINE L1 4302 4429 -1717 1079 278 88 61 chr3 175287323 175288253 -42748905 - L2 LINE L2 -12 3301 2349 341 269 67 34 chr3 175288488 175288637 -42748521 + MLT1J LTR MaLR 307 460 -51 2361 42 62 7 chr3 175288765 175289053 -42748105 + AluY SINE Alu 1 304 -7 183 42 0 0 chr3 175289083 175289107 -42748051 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 975 309 18 18 chr3 175289123 175289511 -42747647 + MLT1I LTR MaLR 1 388 -21 2277 98 3 0 chr3 175289726 175290023 -42747135 - AluSq SINE Alu -15 298 1 316 323 25 86 chr3 175290167 175290365 -42746793 - L1ME3A LINE L1 -17 6136 5951 225 65 0 0 chr3 175290420 175290451 -42746707 + (CA)n Simple_repeat Simple_repeat 2 32 0 1309 270 83 51 chr3 175290547 175291958 -42745200 - L1ME3A LINE L1 -317 5832 4367 2597 184 68 12 chr3 175291958 175292469 -42744689 + MLT1F LTR MaLR 1 540 -2 1309 270 83 51 chr3 175292469 175292570 -42744588 - L1ME3A LINE L1 -1782 4367 4271 557 202 18 0 chr3 175292572 175292686 -42744472 - MLT1A1 LTR MaLR 0 365 250 309 255 241 56 chr3 175292722 175292938 -42744220 - L1ME3A LINE L1 -5753 366 111 498 250 65 15 chr3 175293227 175293565 -42743593 + L1M2 LINE L1 5131 5491 -671 273 224 0 30 chr3 175293577 175293644 -42743514 + L1ME LINE L1 5531 5595 -526 353 75 19 0 chr3 175293812 175293865 -42743293 - MSTD LTR MaLR 0 457 404 1847 109 0 0 chr3 175293885 175294124 -42743034 - AluSq SINE Alu -17 296 58 1466 192 87 15 chr3 175294126 175294459 -42742699 - MSTD LTR MaLR -39 357 1 298 271 24 96 chr3 175295035 175295312 -42741846 + L1ME LINE L1 5599 5761 -360 5333 128 19 22 chr3 175295312 175296472 -42740686 + L1PA16 LINE L1 5008 6166 0 298 271 24 96 chr3 175296472 175296528 -42740630 + L1ME LINE L1 5761 5819 -302 279 0 0 0 chr3 175296608 175296639 -42740519 + (CA)n Simple_repeat Simple_repeat 1 31 0 2234 102 0 33 chr3 175296860 175297164 -42739994 - AluSq SINE Alu -19 294 1 2178 109 60 0 chr3 175297181 175297528 -42739630 - L1MA2 LINE L1 0 6304 5937 12556 128 79 10 chr3 175297528 175299717 -42737441 - L1M1 LINE L1 -4121 3444 1105 479 150 38 60 chr3 175299720 175299853 -42737305 - L1M1 LINE L1 -7430 135 6 227 342 103 26 chr3 175300165 175300282 -42736876 - L2 LINE L2 -8 3264 3139 1609 186 33 41 chr3 175301160 175301553 -42735605 - MLT1B LTR MaLR 0 390 1 1076 179 124 7 chr3 175301573 175301863 -42735295 - MER33 DNA MER1_type 0 324 1 504 171 239 0 chr3 175302964 175303081 -42734077 - MER96 DNA MER1_type? -27 148 4 194 294 44 29 chr3 175303255 175303323 -42733835 - L3 LINE CR1 -688 889 821 268 242 273 0 chr3 175304062 175304161 -42732997 - MIR SINE MIR -102 160 35 207 167 21 21 chr3 175304333 175304381 -42732777 + (TA)n Simple_repeat Simple_repeat 2 49 0 33 25 0 0 chr3 175304465 175304505 -42732653 + AT_rich Low_complexity Low_complexity 1 40 0 710 194 0 0 chr3 175305801 175305925 -42731233 + FLAM_C SINE Alu 1 124 -19 189 195 0 0 chr3 175306154 175306195 -42730963 + (TA)n Simple_repeat Simple_repeat 1 41 0 1808 159 3 20 chr3 175306293 175306595 -42730563 - AluJb SINE Alu -15 297 1 278 159 0 0 chr3 175306766 175306810 -42730348 - Alu SINE Alu -258 44 1 779 261 43 10 chr3 175306984 175307191 -42729967 + MIR SINE MIR 14 227 -35 192 111 0 0 chr3 175307464 175307500 -42729658 + (TG)n Simple_repeat Simple_repeat 2 37 0 530 307 60 12 chr3 175307559 175307725 -42729433 - MIR3 SINE MIR -14 194 21 197 210 0 129 chr3 175307854 175307916 -42729242 + L2 LINE L2 3219 3272 0 1678 121 4 15 chr3 175308187 175308459 -42728699 - L1MB3 LINE L1 -2 6181 5913 308 352 109 12 chr3 175308711 175308958 -42728200 + L1ME4a LINE L1 5798 6068 -53 320 303 106 10 chr3 175309268 175309466 -42727692 + LTR67 LTR ERVL 339 555 -2 429 270 51 92 chr3 175309623 175309916 -42727242 + MLT1I LTR MaLR 129 409 0 24 67 0 0 chr3 175309934 175309979 -42727179 + AT_rich Low_complexity Low_complexity 1 45 0 293 154 115 0 chr3 175310030 175310082 -42727076 + AluS SINE Alu 2 59 -249 1717 167 4 8 chr3 175310081 175310383 -42726775 + AluJo SINE Alu 21 321 0 262 318 65 0 chr3 175311133 175311240 -42725918 + L3b LINE CR1 1318 1431 -152 830 202 113 30 chr3 175312247 175312450 -42724708 + MER58A DNA MER1_type 5 224 0 296 256 92 51 chr3 175312736 175312931 -42724227 + L2 LINE L2 2447 2649 -665 282 351 0 0 chr3 175313076 175313170 -42723988 + L2 LINE L2 2406 2499 -815 3112 65 54 34 chr3 175314932 175315376 -42721782 - MLT2A2 LTR ERVL 0 453 1 22 35 0 0 chr3 175317015 175317044 -42720114 + AT_rich Low_complexity Low_complexity 1 29 0 352 274 53 0 chr3 175317309 175317404 -42719754 + L2 LINE L2 2584 2683 -631 4577 157 35 4 chr3 175317424 175318386 -42718772 + L1MB7 LINE L1 5175 6163 -21 851 288 165 23 chr3 175318389 175318932 -42718226 + L2 LINE L2 2698 3313 0 554 174 35 9 chr3 175321005 175321120 -42716038 - L1MC1 LINE L1 0 6333 6216 348 182 0 15 chr3 175321125 175321191 -42715967 + MLT1E3 LTR MaLR 509 573 -51 874 115 0 20 chr3 175321191 175321339 -42715819 + L1MB2 LINE L1 5836 5980 -191 740 176 14 0 chr3 175321337 175321479 -42715679 - L1MA7 LINE L1 -300 5991 5848 * 1948 159 69 4 chr3 175321481 175321892 -42715266 - L1P4 LINE L1 -450 5716 5274 5766 82 13 20 chr3 175322875 175323399 -42713759 - L1PA10 LINE L1 -43 6125 5608 3246 162 19 73 chr3 175323399 175324128 -42713030 + LTR8 LTR ERV1 1 690 -1 5766 82 13 20 chr3 175324128 175324462 -42712696 - L1PA10 LINE L1 -560 5608 5273 3638 102 16 0 chr3 175324462 175325021 -42712137 - L1PA10 LINE L1 -1533 4613 4046 600 158 50 8 chr3 175325095 175325215 -42711943 + MER5A DNA MER1_type 65 189 0 251 287 74 41 chr3 175325106 175325228 -42711930 - MER5A DNA MER1_type -63 126 1 * 418 247 67 21 chr3 175326133 175326275 -42710883 - L1MC1 LINE L1 -527 5594 5476 589 184 38 44 chr3 175326551 175326709 -42710449 + MLT1A2-int LTR MaLR 1575 1731 -4 1262 203 38 29 chr3 175326712 175327028 -42710130 + MLT1A2 LTR MaLR 8 326 -48 613 172 10 0 chr3 175327613 175327712 -42709446 + AluJ/FLAM SINE Alu 3 102 -210 472 398 51 10 chr3 175328013 175328327 -42708831 + L1ME3 LINE L1 5545 5871 -291 1799 126 14 0 chr3 175328402 175328696 -42708462 + L1MA3 LINE L1 6008 6305 0 875 125 0 0 chr3 175328724 175328875 -42708283 - FLAM_C SINE Alu 0 151 1 1273 206 91 18 chr3 175328919 175329205 -42707953 + AluJo SINE Alu 1 307 -5 5819 158 25 9 chr3 175329215 175330071 -42707087 + L1MC2 LINE L1 5052 5934 -410 5103 149 26 9 chr3 175330071 175330428 -42706730 + MER6 DNA MER2_type 1 351 -514 288 0 0 0 chr3 175330428 175330460 -42706698 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 5103 149 26 9 chr3 175330460 175330950 -42706208 + MER6 DNA MER2_type 351 862 -3 5819 158 25 9 chr3 175330950 175331367 -42705791 + L1MC2 LINE L1 5934 6343 -1 222 37 0 0 chr3 175331631 175331658 -42705500 + (A)n Simple_repeat Simple_repeat 1 27 0 247 326 112 11 chr3 175331659 175331797 -42705361 + MER5A DNA MER1_type 1 138 -40 364 267 61 42 chr3 175331797 175331962 -42705196 - MLT1K LTR MaLR 0 588 421 225 94 0 0 chr3 175332255 175332287 -42704871 + (A)n Simple_repeat Simple_repeat 1 32 0 306 311 49 27 chr3 175332497 175332654 -42704504 - MIR SINE MIR -37 171 9 27 0 0 0 chr3 175332672 175332699 -42704459 + AT_rich Low_complexity Low_complexity 1 27 0 575 233 125 0 chr3 175332699 175332875 -42704283 - MIR SINE MIR 0 262 65 1170 231 153 33 chr3 175332875 175333308 -42703850 + L1MD2 LINE L1 5846 6334 -25 1566 172 7 57 chr3 175333479 175333776 -42703382 - AluJo SINE Alu -30 282 1 2476 184 170 105 chr3 175334667 175334893 -42702265 + L1MC3 LINE L1 6689 6899 -886 1689 110 0 0 chr3 175334893 175335120 -42702038 + AluSg/x SINE Alu 78 304 -6 2476 184 170 105 chr3 175335120 175335262 -42701896 + L1MC3 LINE L1 6899 7030 -755 346 255 11 43 chr3 175335262 175335356 -42701802 + MLT1F1 LTR MaLR 35 125 -442 2476 184 170 105 chr3 175335356 175335912 -42701246 + L1MC3 LINE L1 7030 7773 -12 308 311 50 0 chr3 175336783 175336902 -42700256 - MIR SINE MIR -61 201 77 244 89 0 143 chr3 175337257 175337313 -42699845 + L1MC5 LINE L1 7743 7790 -171 180 152 0 0 chr3 175337497 175337530 -42699628 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 500 290 55 48 chr3 175337720 175338030 -42699128 - MLT1J1 LTR MaLR -126 320 3 445 261 0 0 chr3 175338063 175338151 -42699007 + MER69 DNA AcHobo 1 88 -1138 2133 222 54 21 chr3 175338151 175338668 -42698490 - MLT1F LTR MaLR 0 542 9 289 43 0 22 chr3 175338670 175338716 -42698442 + MER69 DNA AcHobo 102 146 -1080 258 343 63 46 chr3 175338964 175339139 -42698019 + MIR3 SINE MIR 29 206 -2 596 280 27 0 chr3 175339143 175339293 -42697865 + MIR SINE MIR 109 262 0 1631 236 80 35 chr3 175339435 175340063 -42697095 + L1ME3 LINE L1 5500 6155 -7 310 293 105 38 chr3 175340250 175340383 -42696775 - L2 LINE L2 -1 3312 3171 865 333 141 51 chr3 175340565 175341590 -42695568 - L2 LINE L2 -385 2929 1813 386 289 98 49 chr3 175341714 175341939 -42695219 - LTR67 LTR ERVL -40 517 282 1318 292 65 8 chr3 175342507 175343003 -42694155 - ERVL LTR ERVL -403 5361 4838 1058 325 46 19 chr3 175343100 175343666 -42693492 - ERVL LTR ERVL -1068 4696 4116 235 333 97 0 chr3 175343983 175344097 -42693061 - L2 LINE L2 -1892 1422 1298 2235 51 3 41 chr3 175344289 175344613 -42692545 + AluY SINE Alu 1 313 0 1101 240 38 41 chr3 175344766 175345132 -42692026 - MLT1A1 LTR MaLR 0 365 1 322 325 8 17 chr3 175345884 175346004 -42691154 - L2 LINE L2 -222 3050 2932 1779 176 18 3 chr3 175346022 175346357 -42690801 - MLT1A1 LTR MaLR 0 365 26 2388 90 0 0 chr3 175346423 175346722 -42690436 + AluSq SINE Alu 1 299 -14 361 344 16 24 chr3 175346882 175347007 -42690151 + MIR SINE MIR 8 131 -131 457 178 140 0 chr3 175347240 175347347 -42689811 + MER20 DNA MER1_type 97 218 -1 1864 158 0 7 chr3 175347407 175347698 -42689460 - AluJb SINE Alu -23 289 1 2233 117 3 0 chr3 175348224 175348524 -42688634 + AluSx SINE Alu 1 301 -11 2298 163 72 52 chr3 175348894 175349101 -42688057 + MLT2B1 LTR ERVL 1 202 -318 1203 149 149 38 chr3 175349101 175349362 -42687796 + AluJo SINE Alu 1 290 -12 2298 163 72 52 chr3 175349362 175349652 -42687506 + MLT2B1 LTR ERVL 202 508 -12 930 208 78 14 chr3 175349812 175350105 -42687053 + MER33 DNA MER1_type 1 312 -12 2816 90 57 0 chr3 175350625 175351026 -42686132 + L1PA7 LINE L1 5728 6151 -3 2220 214 77 23 chr3 175351028 175351584 -42685574 - MLT1E LTR MaLR 0 593 8 974 314 81 43 chr3 175352273 175353139 -42684019 - L2 LINE L2 -2 3270 2351 387 0 0 0 chr3 175353718 175353761 -42683397 + (TA)n Simple_repeat Simple_repeat 2 44 0 2139 120 3 3 chr3 175354874 175355174 -42681984 - AluSx SINE Alu -12 300 1 1455 177 11 14 chr3 175356510 175356792 -42680366 - AluJo SINE Alu -31 281 1 1664 180 0 0 chr3 175356920 175357187 -42679971 - AluJb SINE Alu -45 267 1 28 0 0 0 chr3 175357566 175357594 -42679564 + AT_rich Low_complexity Low_complexity 1 28 0 1783 146 70 0 chr3 175357927 175358255 -42678903 + MER46B DNA MER2_type 10 235 -1 473 224 0 20 chr3 175358614 175358712 -42678446 + MIR SINE MIR 59 154 -108 29 0 0 0 chr3 175358959 175358988 -42678170 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr3 175359065 175359097 -42678061 + AT_rich Low_complexity Low_complexity 1 32 0 308 88 0 0 chr3 175359098 175359147 -42678011 - L1MB1 LINE L1 -51 6117 6076 6073 143 27 6 chr3 175359156 175360302 -42676856 - L1MA4 LINE L1 -2 6298 5131 3753 84 39 0 chr3 175360300 175360930 -42676228 + L1P4 LINE L1 5144 5790 -378 * 1225 104 31 21 chr3 175360921 175361113 -42676045 + L1PA10 LINE L1 5682 5875 -293 * 1127 29 7 0 chr3 175361127 175361265 -42675893 - L1PA5 LINE L1 -5 6149 6011 19366 152 58 14 chr3 175361265 175367967 -42669191 - L1M1 LINE L1 -708 7015 14 5396 160 18 1 chr3 175367971 175368939 -42668219 - L1 LINE L1 -1400 4928 3945 7699 178 34 20 chr3 175369897 175370851 -42666307 - L1 LINE L1 -2392 3936 2997 1848 176 0 3 chr3 175370851 175371157 -42666001 - AluJb SINE Alu -7 305 1 7699 178 34 20 chr3 175371157 175374082 -42663076 - L1 LINE L1 -3331 2997 13 2304 99 0 0 chr3 175374480 175374782 -42662376 - AluSx SINE Alu -10 302 1 1276 164 153 33 chr3 175374945 175375311 -42661847 + L1MC4 LINE L1 7630 8039 -3 1091 264 67 44 chr3 175375621 175376071 -42661087 + L1ME4a LINE L1 5456 5915 -206 2134 118 27 51 chr3 175376095 175376468 -42660690 - THE1B LTR MaLR 0 364 1 484 237 94 9 chr3 175376631 175376784 -42660374 - MER45A DNA AcHobo -3 175 1 8453 40 0 0 chr3 175377446 175378483 -42658675 + L1P LINE L1 3651 4687 -1459 36 94 0 0 chr3 175378606 175378712 -42658446 + GC_rich Low_complexity Low_complexity 1 106 0 690 254 153 16 chr3 175378875 175379064 -42658094 - MIR SINE MIR -27 235 21 467 266 29 75 chr3 175379091 175379332 -42657826 - L2 LINE L2 -376 2938 2709 1102 164 200 33 chr3 175379373 175379703 -42657455 + Charlie4a DNA MER1_type 14 398 -110 310 266 51 0 chr3 175379708 175379787 -42657371 - L1MC4 LINE L1 -1346 6696 6614 432 204 23 0 chr3 175379805 175379893 -42657265 + Charlie4a DNA MER1_type 418 507 -1 1519 221 71 16 chr3 175379896 175380262 -42656896 - L2 LINE L2 -616 2698 2313 258 261 61 55 chr3 175380893 175381058 -42656100 + L1ME4a LINE L1 5894 6059 -62 216 0 0 0 chr3 175381974 175381998 -42655160 + (T)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr3 175382310 175382332 -42654826 + AT_rich Low_complexity Low_complexity 1 22 0 1536 82 10 0 chr3 175382877 175383072 -42654086 + AluSq SINE Alu 1 197 -116 2382 89 0 0 chr3 175383159 175383461 -42653697 - AluSg1 SINE Alu -7 302 1 190 295 77 39 chr3 175383678 175383756 -42653402 - L3 LINE CR1 -5 1572 1492 1115 218 42 54 chr3 175384053 175384384 -42652774 + Charlie1a DNA MER1_type 2 328 -1127 190 339 0 17 chr3 175384444 175384503 -42652655 - L2 LINE L2 -20 3293 3236 1990 134 0 7 chr3 175384573 175384865 -42652293 + AluSx SINE Alu 1 290 -22 256 267 17 0 chr3 175385346 175385406 -42651752 + L2 LINE L2 3156 3216 -56 2165 110 3 0 chr3 175385807 175386099 -42651059 + AluSx SINE Alu 1 293 -19 21 57 0 0 chr3 175386153 175386188 -42650970 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr3 175386445 175386472 -42650686 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr3 175387128 175387149 -42650009 + AT_rich Low_complexity Low_complexity 1 21 0 1754 172 3 34 chr3 175387392 175387712 -42649446 - AluJb SINE Alu -2 310 1 2489 66 0 19 chr3 175387734 175388051 -42649107 - AluY SINE Alu 0 311 1 25 0 0 0 chr3 175388638 175388663 -42648495 + AT_rich Low_complexity Low_complexity 1 25 0 1655 179 0 20 chr3 175388665 175388962 -42648196 + AluJb SINE Alu 1 291 -21 2102 137 0 0 chr3 175389233 175389532 -42647626 + AluSx SINE Alu 1 299 -13 555 215 50 8 chr3 175391224 175391345 -42645813 - MER5A DNA MER1_type 0 189 64 22 0 0 0 chr3 175391996 175392018 -42645140 + AT_rich Low_complexity Low_complexity 1 22 0 189 74 0 0 chr3 175392118 175392145 -42645013 + (TATG)n Simple_repeat Simple_repeat 2 28 0 30 45 0 0 chr3 175392231 175392275 -42644883 + AT_rich Low_complexity Low_complexity 1 44 0 1919 147 3 7 chr3 175393255 175393567 -42643591 + AluJb SINE Alu 1 311 0 2161 106 0 10 chr3 175394029 175394331 -42642827 - AluSg SINE Alu -11 299 1 838 145 0 0 chr3 175394579 175394710 -42642448 - AluJb SINE Alu -181 131 1 2618 45 0 3 chr3 175395141 175395455 -42641703 + AluYb8 SINE Alu 1 313 -5 2073 116 3 39 chr3 175395878 175396189 -42640969 - AluSc SINE Alu -9 300 1 244 301 105 42 chr3 175396257 175396400 -42640758 - MER5A DNA MER1_type -4 185 34 24 32 0 0 chr3 175396643 175396674 -42640484 + AT_rich Low_complexity Low_complexity 1 31 0 224 246 15 15 chr3 175396796 175396861 -42640297 + GA-rich Low_complexity Low_complexity 2 66 0 1651 193 7 14 chr3 175396945 175397240 -42639918 + AluSx SINE Alu 1 293 -19 1413 134 0 5 chr3 175398090 175398299 -42638859 - AluJb SINE Alu -16 296 89 1651 193 7 14 chr3 175398993 175399288 -42637870 - AluSx SINE Alu -19 293 1 224 246 15 15 chr3 175399372 175399437 -42637721 + CT-rich Low_complexity Low_complexity 2 66 0 24 32 0 0 chr3 175399559 175399590 -42637568 + AT_rich Low_complexity Low_complexity 1 31 0 244 301 105 42 chr3 175399833 175399976 -42637182 + MER5A DNA MER1_type 34 185 -4 2073 116 3 39 chr3 175400044 175400355 -42636803 + AluSc SINE Alu 1 300 -9 2402 78 0 22 chr3 175400778 175401098 -42636060 - AluYb8 SINE Alu -5 313 1 248 311 178 0 chr3 175401820 175401910 -42635248 - L2 LINE L2 -18 3295 3190 473 196 15 36 chr3 175402286 175402437 -42634721 + L1MB8 LINE L1 6022 6183 -1 300 53 0 0 chr3 175402444 175402482 -42634676 + (CA)n Simple_repeat Simple_repeat 2 39 0 224 283 192 10 chr3 175402538 175402637 -42634521 - L2 LINE L2 -3 3269 3153 194 269 84 84 chr3 175402849 175402968 -42634190 - L2 LINE L2 -299 2973 2855 23 54 0 0 chr3 175403696 175403733 -42633425 + AT_rich Low_complexity Low_complexity 1 37 0 322 288 153 0 chr3 175404015 175404126 -42633032 + MIR3 SINE MIR 50 177 -31 1831 157 28 0 chr3 175404146 175404432 -42632726 - AluSx SINE Alu -18 294 1 2087 105 17 17 chr3 175404661 175404957 -42632201 - AluSq SINE Alu -17 296 1 281 138 37 0 chr3 175405319 175405376 -42631782 + Alu SINE Alu 251 295 -7 272 302 81 0 chr3 175405731 175405817 -42631341 - MIR3 SINE MIR -5 203 111 1733 273 205 28 chr3 175406133 175407035 -42630123 - L2 LINE L2 -3 3310 2015 2023 145 0 0 chr3 175407035 175407332 -42629826 + AluSx SINE Alu 1 297 -15 1733 273 205 28 chr3 175407332 175407428 -42629730 - L2 LINE L2 -1298 2015 1937 4501 124 80 6 chr3 175408214 175409010 -42628148 - L1MC1 LINE L1 -9 6324 5470 264 123 0 62 chr3 175409031 175409096 -42628062 - L1MB4 LINE L1 -9 6171 6111 7741 187 56 11 chr3 175409099 175411073 -42626085 - L1MB2 LINE L1 -7 6164 4025 1397 184 37 34 chr3 175411073 175411367 -42625791 - AluJo SINE Alu -17 295 1 7741 187 56 11 chr3 175411367 175412064 -42625094 - L1MB2 LINE L1 -2146 4025 3361 221 317 42 35 chr3 175412514 175412656 -42624502 - L2 LINE L2 -496 2818 2676 1234 125 22 54 chr3 175412658 175412882 -42624276 + MER20 DNA MER1_type 2 218 -1 410 153 0 0 chr3 175413073 175413145 -42624013 + L1PB4 LINE L1 6073 6144 -12 520 329 80 69 chr3 175413233 175413870 -42623288 - L2 LINE L2 -5 3267 2625 220 268 299 0 chr3 175414763 175414860 -42622298 + L2 LINE L2 3188 3313 0 1343 169 16 0 chr3 175414991 175415246 -42621912 - L1MB7 LINE L1 -3 6181 5923 3905 181 68 9 chr3 175415246 175416035 -42621123 + MER21B LTR ERV1 1 836 -27 501 175 21 0 chr3 175416087 175416184 -42620974 - L1MB7 LINE L1 -252 5926 5828 1615 149 32 36 chr3 175416184 175416493 -42620665 - MER44D DNA MER2_type 0 609 32 1962 141 37 98 chr3 175416509 175416630 -42620528 - L1MB7 LINE L1 -355 5829 5702 2168 96 3 10 chr3 175416630 175416931 -42620227 - AluSp SINE Alu -14 299 1 1962 141 37 98 chr3 175416931 175417299 -42619859 - L1MB7 LINE L1 -482 5702 5370 1264 149 50 0 chr3 175417318 175417539 -42619619 - MER46A DNA MER2_type -4 232 1 695 200 0 0 chr3 175417735 175417850 -42619308 - AluJo SINE Alu -134 178 64 1658 190 0 28 chr3 175418488 175418777 -42618381 - AluJo SINE Alu -29 283 3 325 246 91 36 chr3 175419267 175419377 -42617781 - MIR SINE MIR -142 120 5 4130 177 68 77 chr3 175419447 175420703 -42616455 + Charlie1a DNA MER1_type 2 1246 -209 208 313 0 0 chr3 175420869 175420917 -42616241 - L2 LINE L2 -15 3257 3210 282 283 232 11 chr3 175422686 175422863 -42614295 - MIR SINE MIR -34 228 13 836 180 42 11 chr3 175422920 175423133 -42614025 + MER33 DNA MER1_type 1 214 -90 2545 160 67 35 chr3 175423752 175424346 -42612812 + L1MB8 LINE L1 5566 6178 0 456 158 158 14 chr3 175424346 175424485 -42612673 + MER69 DNA AcHobo 2256 2414 -112 340 321 44 105 chr3 175425635 175426177 -42610981 + L1M2 LINE L1 756 1264 -5585 21 0 0 0 chr3 175427272 175427293 -42609865 + AT_rich Low_complexity Low_complexity 1 21 0 560 303 40 13 chr3 175428298 175428450 -42608708 + L2 LINE L2 3116 3271 -1 1321 220 53 20 chr3 175430761 175431102 -42606056 - MLT1A1 LTR MaLR -12 353 2 2226 121 7 0 chr3 175431597 175431902 -42605256 - AluSg SINE Alu -3 307 1 1960 142 0 7 chr3 175432299 175432588 -42604570 - AluSx SINE Alu -25 287 1 782 214 6 0 chr3 175432754 175432927 -42604231 - L1MD2 LINE L1 -10 6349 6176 1751 226 45 18 chr3 175433187 175433850 -42603308 - Charlie2 DNA MER1_type -71 2791 2111 2168 113 6 25 chr3 175433851 175434170 -42602988 + AluSp SINE Alu 1 313 0 658 137 0 0 chr3 175434181 175434276 -42602882 - AluS SINE Alu -218 95 1 1089 220 67 5 chr3 175434303 175434526 -42602632 - MER8 DNA MER2_type -1 238 2 975 245 137 32 chr3 175435849 175436286 -42600872 - L2 LINE L2 0 3313 2831 452 214 19 10 chr3 175436615 175436718 -42600440 - MER8 DNA MER2_type -24 215 112 925 157 102 68 chr3 175436831 175437125 -42600033 - MLT1E2 LTR MaLR -318 308 5 2467 245 58 17 chr3 175437271 175437962 -42599196 + MER21B LTR ERV1 23 741 -122 440 297 0 16 chr3 175437976 175438104 -42599054 - MLT1E LTR MaLR -467 126 1 3153 135 46 16 chr3 175438151 175438197 -42598961 + L1PA16 LINE L1 5595 5638 -528 2595 115 40 33 chr3 175438197 175438622 -42598536 + MSTA LTR MaLR 1 428 0 3153 135 46 16 chr3 175438622 175439122 -42598036 + L1PA16 LINE L1 5638 6157 -9 744 241 117 16 chr3 175440558 175440940 -42596218 + MLT1L LTR MaLR 101 608 -7 540 280 53 49 chr3 175441033 175441276 -42595882 - MLT1K LTR MaLR -23 565 322 333 299 0 10 chr3 175441317 175441414 -42595744 - MLT1K LTR MaLR -391 197 102 2304 113 0 3 chr3 175442246 175442557 -42594601 + AluSx SINE Alu 1 310 -2 28 29 0 0 chr3 175442637 175442672 -42594486 + AT_rich Low_complexity Low_complexity 1 35 0 812 222 30 94 chr3 175443204 175443470 -42593688 + MIR SINE MIR 4 252 -10 623 260 41 25 chr3 175443705 175443901 -42593257 - L2 LINE L2 -4 3309 3111 910 118 0 0 chr3 175443902 175444037 -42593121 + AluSg/x SINE Alu 178 312 0 222 37 0 0 chr3 175444039 175444066 -42593092 + (GGAA)n Simple_repeat Simple_repeat 3 29 0 209 406 14 0 chr3 175444066 175444135 -42593023 - MIR SINE MIR -187 75 6 1217 279 56 22 chr3 175444911 175445356 -42591802 - LTR16B LTR ERVL 0 464 5 214 147 0 0 chr3 175445485 175445519 -42591639 + (TG)n Simple_repeat Simple_repeat 1 34 0 2584 152 26 30 chr3 175447913 175448405 -42588753 - L1MB2 LINE L1 0 6171 5682 2005 143 0 13 chr3 175448588 175448889 -42588269 + AluSx SINE Alu 1 297 -15 791 198 40 23 chr3 175449230 175449407 -42587751 - MIR SINE MIR -1 261 82 4456 149 70 7 chr3 175449425 175450256 -42586902 - L1MC1 LINE L1 -5 6328 5446 243 285 231 39 chr3 175450511 175450641 -42586517 + L2 LINE L2 3118 3272 0 787 280 45 122 chr3 175451307 175452249 -42584909 - L2 LINE L2 -1 3271 2412 225 0 0 0 chr3 175452252 175452277 -42584881 + (GA)n Simple_repeat Simple_repeat 2 26 0 23 33 0 0 chr3 175452547 175452577 -42584581 + AT_rich Low_complexity Low_complexity 1 30 0 220 381 7 29 chr3 175453411 175453550 -42583608 + L3b LINE CR1 1350 1485 -98 628 153 10 0 chr3 175454151 175454249 -42582909 + AluJ/FLAM SINE Alu 1 99 -213 419 162 95 0 chr3 175454259 175454333 -42582825 + AluSg/x SINE Alu 205 285 -24 228 279 9 72 chr3 175454439 175454550 -42582608 - MLT2E LTR ERVL -485 143 40 1298 225 70 6 chr3 175454657 175455013 -42582145 - MER63B DNA MER1_type -57 379 1 752 272 25 55 chr3 175457009 175457443 -42579715 + L1ME3A LINE L1 5531 5951 -219 1131 161 0 0 chr3 175457505 175457673 -42579485 + AluJo SINE Alu 42 209 -103 1794 170 3 3 chr3 175458140 175458423 -42578735 - AluJb SINE Alu -18 294 12 23 54 0 0 chr3 175458572 175458609 -42578549 + AT_rich Low_complexity Low_complexity 1 37 0 330 266 142 30 chr3 175459045 175459214 -42577944 + MIR SINE MIR 1 188 -74 407 221 0 76 chr3 175460139 175460297 -42576861 - L1ME4a LINE L1 -2 6119 5974 184 98 24 24 chr3 175461477 175461518 -42575640 + (CGGGG)n Simple_repeat Simple_repeat 4 44 0 216 67 0 0 chr3 175461556 175461586 -42575572 + (CCGAG)n Simple_repeat Simple_repeat 4 33 0 21 0 0 0 chr3 175461874 175461895 -42575263 + GC_rich Low_complexity Low_complexity 1 21 0 216 195 0 0 chr3 175461971 175462012 -42575146 + (CTG)n Simple_repeat Simple_repeat 3 43 0 347 71 0 18 chr3 175462715 175462771 -42574387 + (TG)n Simple_repeat Simple_repeat 2 56 0 32 0 0 0 chr3 175464385 175464417 -42572741 + AT_rich Low_complexity Low_complexity 1 32 0 451 305 75 23 chr3 175465548 175465722 -42571436 - L2 LINE L2 -58 3214 3032 322 323 45 8 chr3 175465750 175465883 -42571275 + MIR SINE MIR 16 153 -109 2074 126 72 26 chr3 175467652 175468000 -42569158 - THE1B LTR MaLR 0 364 1 307 270 16 8 chr3 175468847 175468973 -42568185 + MER113 DNA MER1_type? 44 170 -351 32 43 0 0 chr3 175469946 175469992 -42567166 + AT_rich Low_complexity Low_complexity 1 46 0 850 200 0 54 chr3 175470092 175470277 -42566881 - FRAM SINE Alu -2 174 1 29 28 0 0 chr3 175470300 175470336 -42566822 + AT_rich Low_complexity Low_complexity 1 36 0 2111 116 7 3 chr3 175470456 175470748 -42566410 - AluSx SINE Alu -19 293 1 418 335 46 5 chr3 175470783 175470980 -42566178 - L1ME4a LINE L1 -302 5819 5615 872 237 16 33 chr3 175471013 175471258 -42565900 - MIR SINE MIR 0 262 22 21 0 0 0 chr3 175472155 175472176 -42564982 + AT_rich Low_complexity Low_complexity 1 21 0 1686 124 58 107 chr3 175472265 175472659 -42564499 + THE1C LTR MaLR 1 375 0 2049 146 0 3 chr3 175473214 175473515 -42563643 - AluJb SINE Alu -12 300 1 479 289 88 20 chr3 175474220 175474424 -42562734 - L3b LINE CR1 -87 1496 1279 387 219 21 10 chr3 175474718 175474814 -42562344 - MLT1L LTR MaLR -8 607 511 767 251 109 58 chr3 175474882 175475241 -42561917 - MLT1L LTR MaLR -221 394 18 307 47 0 0 chr3 175475477 175475520 -42561638 + MADE1 DNA Mariner 1 43 -37 350 331 40 20 chr3 175476162 175476310 -42560848 - L1M4 LINE L1 -1923 4223 4073 1539 164 73 21 chr3 175477238 175477524 -42559634 - AluJb SINE Alu -11 301 1 243 0 0 0 chr3 175477525 175477552 -42559606 + (T)n Simple_repeat Simple_repeat 1 27 0 609 220 50 13 chr3 175478517 175478533 -42558625 - L1MA10 LINE L1 0 6334 6319 2234 210 65 36 chr3 175478533 175479280 -42557878 - L1ME1 LINE L1 -5 6161 5350 242 400 10 0 chr3 175480307 175480407 -42556751 + L2 LINE L2 2568 2668 -646 504 270 117 40 chr3 175481030 175481252 -42555906 - MIR SINE MIR -16 246 8 243 61 0 0 chr3 175482292 175482325 -42554833 + (TG)n Simple_repeat Simple_repeat 2 34 0 2125 129 10 0 chr3 175482585 175482879 -42554279 - AluSg SINE Alu -13 297 1 1867 163 7 0 chr3 175483022 175483311 -42553847 + AluJo SINE Alu 2 292 -20 4177 159 34 37 chr3 175483339 175484300 -42552858 - L1MB2 LINE L1 -1 6170 5214 445 207 0 0 chr3 175484322 175484409 -42552749 - L1MC4 LINE L1 0 8042 7956 536 214 42 42 chr3 175484614 175484782 -42552376 + MER20 DNA MER1_type 1 168 -51 318 300 71 4 chr3 175485261 175485432 -42551726 + MIR SINE MIR 3 182 -73 842 255 15 67 chr3 175485434 175485506 -42551652 + MIR SINE MIR 2 76 -186 2184 98 0 29 chr3 175485506 175485812 -42551346 - AluSx SINE Alu -15 297 1 842 255 15 67 chr3 175485812 175486006 -42551152 + MIR SINE MIR 76 254 -8 899 172 12 25 chr3 175486007 175486170 -42550988 - FRAM SINE Alu -18 158 1 191 176 0 0 chr3 175486868 175486902 -42550256 + MIR SINE MIR 195 228 -34 248 125 31 62 chr3 175487100 175487164 -42549994 - L1ME3A LINE L1 -118 6052 5991 825 216 0 0 chr3 175487974 175488136 -42549022 - L1MB7 LINE L1 -19 6165 6004 2551 80 0 0 chr3 175489298 175489609 -42547549 + AluSq SINE Alu 1 311 -2 238 254 28 28 chr3 175491084 175491155 -42546003 - L2 LINE L2 -6 3266 3196 25 75 0 0 chr3 175491273 175491326 -42545832 + AT_rich Low_complexity Low_complexity 1 53 0 755 222 88 138 chr3 175491547 175492110 -42545048 - L1MC4a LINE L1 -1841 5967 5377 279 0 0 0 chr3 175492110 175492141 -42545017 + (TC)n Simple_repeat Simple_repeat 2 32 0 279 0 0 0 chr3 175492140 175492171 -42544987 + (TG)n Simple_repeat Simple_repeat 2 32 0 755 222 88 138 chr3 175492141 175492170 -42544988 - L1MC4a LINE L1 -2431 5377 5348 189 0 0 0 chr3 175492170 175492191 -42544967 + (TA)n Simple_repeat Simple_repeat 2 22 0 2339 117 0 0 chr3 175492191 175492500 -42544658 - AluSx SINE Alu -3 309 1 755 222 88 138 chr3 175492500 175492563 -42544595 - L1MC4a LINE L1 -2459 5349 5379 5747 117 14 22 chr3 175492563 175494353 -42542805 - L1PA15 LINE L1 0 6165 4397 755 222 88 138 chr3 175494353 175494462 -42542696 - L1MC4a LINE L1 -2428 5380 5267 418 303 168 49 chr3 175494826 175495278 -42541880 - L1MC4a LINE L1 -1311 4835 4330 296 291 40 68 chr3 175495350 175495804 -42541354 - L1MC4a LINE L1 -1922 4224 3784 2028 135 6 32 chr3 175495806 175496154 -42541004 + MER2 DNA MER2_type 2 340 -4 279 252 50 58 chr3 175497282 175497421 -42539737 + MIR SINE MIR 100 237 -25 1021 283 60 27 chr3 175497494 175497862 -42539296 - L2 LINE L2 0 3313 2934 1044 102 68 0 chr3 175498379 175498556 -42538602 - L1MC3 LINE L1 0 7785 7597 600 232 182 78 chr3 175498557 175498876 -42538282 - MER21B LTR ERV1 -149 714 363 1326 187 48 0 chr3 175498914 175499182 -42537976 - L1MC3 LINE L1 -366 7419 7139 2346 149 186 8 chr3 175499649 175500133 -42537025 - MER101B LTR ERV1 0 570 1 1544 83 51 5 chr3 175500666 175500883 -42536275 + MER30 DNA MER1_type 4 230 0 684 184 97 51 chr3 175501277 175501473 -42535685 - MER20 DNA MER1_type -14 205 1 246 282 215 48 chr3 175502619 175502828 -42534330 + MIR SINE MIR 8 251 -11 1319 246 0 19 chr3 175502879 175502989 -42534169 + L2 LINE L2 2788 2903 -410 14601 116 50 7 chr3 175502989 175503042 -42534116 + Tigger1 DNA MER2_type 1 50 -2368 216 0 0 0 chr3 175503042 175503066 -42534092 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 14601 116 50 7 chr3 175503066 175503881 -42533277 + Tigger1 DNA MER2_type 50 828 -1590 2333 87 3 3 chr3 175503881 175504190 -42532968 + AluSc SINE Alu 1 309 0 14601 116 50 7 chr3 175504190 175505637 -42531521 + Tigger1 DNA MER2_type 828 2418 0 1319 246 0 19 chr3 175505637 175506025 -42531133 + L2 LINE L2 2903 3313 0 342 0 0 0 chr3 175507112 175507150 -42530008 + (CA)n Simple_repeat Simple_repeat 2 39 0 209 324 0 54 chr3 175508676 175508750 -42528408 + MIR3 SINE MIR 3 72 -136 196 42 0 0 chr3 175509892 175509916 -42527242 + (TTTA)n Simple_repeat Simple_repeat 2 100 0 2246 60 0 50 chr3 175509916 175510215 -42526943 - AluY SINE Alu -27 284 1 2264 119 0 0 chr3 175511422 175511725 -42525433 + AluSx SINE Alu 1 303 -9 343 260 60 102 chr3 175511845 175512080 -42525078 + MER102a DNA MER1_type 87 311 -19 680 323 49 44 chr3 175512179 175512523 -42524635 + L2 LINE L2 2917 3262 -10 316 196 0 0 chr3 175512545 175512601 -42524557 + MER5B DNA MER1_type 1 56 -122 574 195 31 23 chr3 175512614 175512742 -42524416 + FLAM_A SINE Alu 5 133 0 216 176 0 0 chr3 175512742 175512776 -42524382 + polypurine Low_complexity Low_complexity 2 35 0 742 120 22 43 chr3 175512780 175512964 -42524194 + GA-rich Low_complexity Low_complexity 1 180 0 735 183 24 0 chr3 175512965 175513091 -42524067 + MER5B DNA MER1_type 50 178 0 333 68 0 0 chr3 175514272 175514316 -42522842 + (TG)n Simple_repeat Simple_repeat 1 44 0 378 0 0 0 chr3 175514366 175514408 -42522750 + (TG)n Simple_repeat Simple_repeat 1 42 0 200 330 106 0 chr3 175515845 175516000 -42521158 + MIR SINE MIR 45 214 -48 756 193 90 6 chr3 175517384 175517550 -42519608 + MER58C DNA MER1_type 36 215 0 359 330 1 11 chr3 175517623 175517756 -42519402 + MIR SINE MIR 2 132 -76 447 111 62 0 chr3 175519094 175519175 -42517983 + L1MB3 LINE L1 6097 6182 -1 22 35 0 0 chr3 175519215 175519244 -42517914 + AT_rich Low_complexity Low_complexity 1 29 0 1981 145 0 0 chr3 175519316 175519624 -42517534 - AluSx SINE Alu 0 308 1 865 116 0 0 chr3 175520336 175520465 -42516693 + L1P5 LINE L1 5664 5792 -359 228 291 0 0 chr3 175520455 175520534 -42516624 - L1MC4 LINE L1 -1349 6693 6615 * 310 278 0 37 chr3 175520573 175520681 -42516477 - L1MC4 LINE L1 -1339 6703 6600 * 318 188 10 73 chr3 175520623 175520719 -42516439 + L1MC4 LINE L1 6614 6703 -1339 218 103 0 26 chr3 175520720 175520759 -42516399 + (TA)n Simple_repeat Simple_repeat 1 38 0 2699 78 3 29 chr3 175520769 175521152 -42516006 + L1PB1 LINE L1 5779 6151 0 414 167 0 29 chr3 175521758 175521860 -42515298 + (TA)n Simple_repeat Simple_repeat 2 100 0 2647 84 3 29 chr3 175521871 175522254 -42514904 + L1PB1 LINE L1 5779 6151 0 288 0 0 0 chr3 175523348 175523380 -42513778 + (TG)n Simple_repeat Simple_repeat 1 32 0 245 340 64 50 chr3 175524770 175525052 -42512106 - L2 LINE L2 -830 2484 2199 770 142 0 0 chr3 175525792 175525933 -42511225 - L1MA6 LINE L1 -1 6299 6159 198 71 0 0 chr3 175525974 175526002 -42511156 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 459 244 25 81 chr3 175526600 175526760 -42510398 - L2 LINE L2 0 3313 3163 211 184 0 155 chr3 175526765 175526868 -42510290 + L2 LINE L2 3133 3219 -94 815 261 60 47 chr3 175527689 175528091 -42509067 - L1ME3 LINE L1 -212 5950 5544 35 63 0 0 chr3 175528312 175528375 -42508783 + AT_rich Low_complexity Low_complexity 1 63 0 389 295 111 5 chr3 175528742 175528932 -42508226 - HAL1 LINE L1 -2286 221 12 240 319 0 0 chr3 175528972 175529041 -42508117 - MIR SINE MIR -15 247 179 212 328 60 0 chr3 175529059 175529126 -42508032 - MIR SINE MIR -187 75 5 25 31 0 0 chr3 175529525 175529557 -42507601 + AT_rich Low_complexity Low_complexity 1 32 0 272 326 3 41 chr3 175529791 175530033 -42507125 + C-rich Low_complexity Low_complexity 1 232 0 1472 95 63 14 chr3 175530143 175530364 -42506794 - AluSx SINE Alu -78 234 3 1059 64 7 21 chr3 175530381 175530522 -42506636 + AluSg/x SINE Alu 154 292 -20 22 35 0 0 chr3 175530579 175530608 -42506550 + AT_rich Low_complexity Low_complexity 1 29 0 651 228 152 12 chr3 175530626 175530797 -42506361 - MIR SINE MIR -58 204 10 351 270 59 56 chr3 175530819 175530971 -42506187 - MIR SINE MIR -65 143 33 3750 128 72 58 chr3 175530971 175532210 -42504948 - pTR5 LTR ERV1 -185 2212 118 656 281 22 11 chr3 175532349 175532534 -42504624 - MER5A DNA MER1_type -1 188 2 1985 116 0 83 chr3 175532663 175533000 -42504158 + AluJb SINE Alu 1 309 -3 295 337 76 27 chr3 175533641 175533825 -42503333 + L2 LINE L2 2397 2589 -725 305 353 58 14 chr3 175533854 175533993 -42503165 - L3 LINE CR1 -14 1563 1419 582 222 36 12 chr3 175536822 175536989 -42500169 - MER58 DNA MER1_type -2223 197 27 25 31 0 0 chr3 175537052 175537084 -42500074 + AT_rich Low_complexity Low_complexity 1 32 0 551 282 32 12 chr3 175537276 175537524 -42499634 - L1ME2 LINE L1 -10 6154 5902 445 253 36 16 chr3 175537526 175537720 -42499438 - L1M4 LINE L1 -3604 2542 2345 308 233 39 58 chr3 175538399 175538469 -42498689 + L2 LINE L2 2283 2353 -961 1863 133 22 0 chr3 175538469 175538790 -42498368 - AluSx SINE Alu 0 327 1 308 233 39 58 chr3 175538790 175538821 -42498337 + L2 LINE L2 2353 2383 -931 2522 214 27 8 chr3 175538957 175539462 -42497696 + MLT2B3 LTR ERVL 2 519 -35 507 33 0 0 chr3 175539462 175539523 -42497635 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 2522 214 27 8 chr3 175539523 175539540 -42497618 + MLT2B3 LTR ERVL 519 534 -20 958 268 101 4 chr3 175539547 175540023 -42497135 + ERVL LTR ERVL 2 541 -5218 27 49 0 0 chr3 175540263 175540304 -42496854 + AT_rich Low_complexity Low_complexity 1 41 0 420 299 49 42 chr3 175540393 175540657 -42496501 - L2 LINE L2 0 3313 3048 436 255 70 87 chr3 175540697 175541126 -42496032 + MER21B LTR ERV1 160 598 -7 610 207 22 53 chr3 175541301 175541593 -42495565 - MER52A LTR ERV1 -1388 367 1 1648 193 81 28 chr3 175541594 175541988 -42495170 - HUERS-P2 LTR ERV1 -2 3086 2672 1313 178 0 4 chr3 175542003 175542239 -42494919 - MER61-int LTR ERV1 -1299 3918 3684 1258 159 0 12 chr3 175542236 175542481 -42494677 - MER61-int LTR ERV1 -2453 2764 2523 * 565 134 0 31 chr3 175542587 175542684 -42494474 + THE1B LTR MaLR 271 364 0 1566 228 43 18 chr3 175543263 175543773 -42493385 - Charlie1b DNA MER1_type 0 523 1 887 209 60 0 chr3 175545023 175545238 -42491920 + L1MB7 LINE L1 5938 6165 -19 1899 147 34 0 chr3 175545414 175545706 -42491452 - AluJb SINE Alu -10 302 1 282 255 229 26 chr3 175545744 175545897 -42491261 + L2 LINE L2 3109 3292 -21 2071 115 3 20 chr3 175545912 175546208 -42490950 + AluSx SINE Alu 1 291 -21 2045 145 0 0 chr3 175546289 175546585 -42490573 + AluJb SINE Alu 1 296 -16 453 246 104 8 chr3 175548428 175548562 -42488596 - MIR SINE MIR -44 218 72 1974 165 0 29 chr3 175548639 175548954 -42488204 + AluJb SINE Alu 1 306 -6 704 243 34 111 chr3 175549200 175549353 -42487805 - L1MC4 LINE L1 -736 7225 7062 1615 128 21 0 chr3 175549353 175549595 -42487563 - AluSx SINE Alu -7 305 59 704 243 34 111 chr3 175549595 175550114 -42487044 - L1MC4 LINE L1 -899 7062 6646 32 0 0 0 chr3 175550463 175550495 -42486663 + AT_rich Low_complexity Low_complexity 1 32 0 344 282 38 0 chr3 175550665 175550796 -42486362 - L1MC4 LINE L1 -1979 5829 5694 2668 7 0 26 chr3 175550798 175551103 -42486055 + AluY SINE Alu 1 297 -14 4009 197 35 17 chr3 175551103 175552267 -42484891 + L1MB7 LINE L1 4989 6165 -19 1899 147 34 0 chr3 175552443 175552735 -42484423 - AluJb SINE Alu -10 302 1 282 255 229 26 chr3 175552773 175552926 -42484232 + L2 LINE L2 3109 3292 -21 2071 115 3 20 chr3 175552941 175553237 -42483921 + AluSx SINE Alu 1 291 -21 2045 145 0 0 chr3 175553318 175553614 -42483544 + AluJb SINE Alu 1 296 -16 453 246 104 8 chr3 175555457 175555591 -42481567 - MIR SINE MIR -44 218 72 1215 227 3 42 chr3 175555673 175555986 -42481172 + AluJb SINE Alu 5 305 -7 704 243 34 111 chr3 175556233 175556386 -42480772 - L1MC4 LINE L1 -736 7225 7062 1660 128 16 0 chr3 175556386 175556629 -42480529 - AluSx SINE Alu -7 305 59 704 243 34 111 chr3 175556629 175557148 -42480010 - L1MC4 LINE L1 -899 7062 6646 32 0 0 0 chr3 175557497 175557529 -42479629 + AT_rich Low_complexity Low_complexity 1 32 0 347 276 104 43 chr3 175557699 175557832 -42479326 - L1MC4 LINE L1 -1979 5829 5706 2468 88 0 0 chr3 175557832 175558139 -42479019 + AluY SINE Alu 1 307 -4 2001 109 17 10 chr3 175558147 175558440 -42478718 + AluSx SINE Alu 1 295 -17 347 276 104 43 chr3 175558440 175558576 -42478582 - L1MC4 LINE L1 -2108 5700 5534 424 320 138 4 chr3 175558672 175558925 -42478233 - L1ME4a LINE L1 -253 5868 5582 540 234 0 0 chr3 175559530 175559637 -42477521 + FLAM_C SINE Alu 26 132 -11 201 250 0 0 chr3 175559912 175559968 -42477190 + (CAA)n Simple_repeat Simple_repeat 2 57 0 287 156 188 0 chr3 175560011 175560075 -42477083 + MER96 DNA MER1_type? 8 83 -92 * 666 174 8 16 chr3 175560073 175560194 -42476964 - LTR41 LTR ERVL -648 125 6 842 162 0 22 chr3 175560418 175560554 -42476604 + AluJo SINE Alu 2 134 -178 180 0 0 0 chr3 175560593 175560613 -42476545 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 393 207 67 67 chr3 175560641 175560805 -42476353 + HAL1b LINE L1 939 1102 -246 657 318 133 39 chr3 175561307 175561697 -42475461 - L2 LINE L2 -23 3249 2823 2312 105 0 3 chr3 175561714 175562020 -42475138 - AluSx SINE Alu -7 305 1 327 333 124 44 chr3 175562731 175562766 -42474392 - L2 LINE L2 -666 2648 2617 2254 111 0 7 chr3 175562766 175563072 -42474086 + AluSx SINE Alu 1 304 -8 327 333 124 44 chr3 175563072 175563495 -42473663 - L2 LINE L2 -697 2617 2153 21 0 0 0 chr3 175564024 175564045 -42473113 + AT_rich Low_complexity Low_complexity 1 21 0 1695 173 44 3 chr3 175565141 175565436 -42471722 - AluJo SINE Alu -5 307 1 1270 182 68 0 chr3 175565731 175565951 -42471207 - MER46A DNA MER2_type -1 235 1 2201 110 0 0 chr3 175566086 175566408 -42470750 - AluSx SINE Alu 0 322 1 2089 146 3 3 chr3 175566571 175566873 -42470285 + AluJb SINE Alu 6 307 -5 351 113 0 0 chr3 175567171 175567224 -42469934 + (TA)n Simple_repeat Simple_repeat 2 54 0 225 132 0 0 chr3 175567919 175567957 -42469201 + (T)n Simple_repeat Simple_repeat 1 38 0 1501 173 126 17 chr3 175570361 175570881 -42466277 - MLT1E1 LTR MaLR -28 626 1 272 220 260 0 chr3 175571072 175571172 -42465986 - MIR3 SINE MIR -49 159 34 2169 113 10 0 chr3 175571812 175572104 -42465054 - AluSx SINE Alu -17 295 1 2083 87 8 0 chr3 175572964 175573230 -42463928 - AluSq SINE Alu -45 268 1 210 244 24 0 chr3 175574109 175574150 -42463008 + L2 LINE L2 3136 3177 -95 503 226 88 15 chr3 175574700 175574837 -42462321 + MIR SINE MIR 97 243 -19 189 383 99 28 chr3 175574896 175575037 -42462121 - L2 LINE L2 0 3272 3122 542 319 159 35 chr3 175575232 175576275 -42460883 + L2 LINE L2 1334 2505 -809 2194 79 4 4 chr3 175576321 175576600 -42460558 + AluSp SINE Alu 1 279 -34 261 0 0 0 chr3 175576600 175576629 -42460529 + (CA)n Simple_repeat Simple_repeat 2 30 0 209 316 110 37 chr3 175576635 175576771 -42460387 + L2 LINE L2 2633 2778 -536 546 170 226 52 chr3 175576799 175577029 -42460129 - L1MC5 LINE L1 -51 7910 7641 227 298 97 32 chr3 175577060 175577184 -42459974 + L2 LINE L2 2773 2904 -410 675 232 0 19 chr3 175577774 175577929 -42459229 + LTR41 LTR ERVL 1 152 -621 2389 84 0 0 chr3 175578128 175578424 -42458734 + AluSg1 SINE Alu 1 296 -13 574 140 75 0 chr3 175578478 175578571 -42458587 + FLAM_C SINE Alu 7 106 -37 3535 197 81 10 chr3 175578634 175579448 -42457710 + L1ME1 LINE L1 5265 6136 -30 471 35 0 0 chr3 175579448 175579505 -42457653 + (TA)n Simple_repeat Simple_repeat 1 57 0 276 201 0 15 chr3 175579523 175579577 -42457581 - AluJ/monomer SINE Alu -249 51 9 1848 130 40 47 chr3 175579577 175579761 -42457397 - AluJo SINE Alu -13 299 116 2408 69 0 0 chr3 175579761 175580050 -42457108 + AluY SINE Alu 1 289 -22 1848 130 40 47 chr3 175580050 175580166 -42456992 - AluJo SINE Alu -196 116 1 379 281 148 57 chr3 175580312 175580804 -42456354 + L1MC4a LINE L1 4722 5258 -888 1821 169 33 0 chr3 175580835 175581137 -42456021 - AluJb SINE Alu 0 312 1 804 272 163 46 chr3 175581152 175581200 -42455958 + L1MC4a LINE L1 5320 5361 -2447 2406 143 48 69 chr3 175581200 175581677 -42455481 + MLT1C LTR MaLR 1 467 0 804 272 163 46 chr3 175581677 175581989 -42455169 + L1MC4a LINE L1 5361 5635 -2173 1933 129 61 0 chr3 175581989 175582268 -42454890 + AluSx SINE Alu 1 296 -16 804 272 163 46 chr3 175582268 175582453 -42454705 + L1MC4a LINE L1 5635 5930 -1878 352 171 41 32 chr3 175582900 175582999 -42454159 + AluS SINE Alu 1 64 -244 2476 60 17 0 chr3 175583359 175583660 -42453498 - AluSx SINE Alu -6 306 1 633 243 159 26 chr3 175584081 175584427 -42452731 - L1ME4a LINE L1 -4 6117 5726 1827 147 10 17 chr3 175584528 175584827 -42452331 + AluJb SINE Alu 1 297 -15 247 185 0 19 chr3 175584850 175584904 -42452254 - LTR67 LTR ERVL -48 509 457 848 262 57 8 chr3 175585088 175585332 -42451826 - MER115 DNA AcHobo 0 693 438 553 234 94 40 chr3 175585402 175585603 -42451555 - MER115 DNA AcHobo -449 244 33 2136 147 72 30 chr3 175585967 175586369 -42450789 - MSTB1 LTR MaLR -13 419 1 1453 171 36 25 chr3 175586520 175586794 -42450364 + AluJo SINE Alu 1 277 -35 408 193 18 88 chr3 175586942 175587056 -42450102 - L2 LINE L2 -13 3300 3195 1600 137 0 0 chr3 175587522 175587756 -42449402 - AluSg/x SINE Alu -14 298 65 2269 115 0 3 chr3 175588318 175588630 -42448528 + AluSx SINE Alu 1 311 -1 377 283 81 72 chr3 175588796 175589019 -42448139 + MIR SINE MIR 8 232 -30 206 203 51 0 chr3 175589019 175589078 -42448080 + GA-rich Low_complexity Low_complexity 2 63 0 2029 112 28 0 chr3 175589336 175589622 -42447536 - AluSp SINE Alu -19 294 1 1275 232 46 35 chr3 175589639 175590128 -42447030 - MLT1E LTR MaLR -41 613 15 2340 100 0 7 chr3 175590227 175590527 -42446631 + AluSx SINE Alu 1 298 -14 639 118 0 0 chr3 175590592 175590685 -42446473 - L1PBa LINE L1 -6135 728 636 1211 146 5 0 chr3 175590690 175590882 -42446276 - L1PBa LINE L1 -6668 195 3 2129 100 28 3 chr3 175592085 175592376 -42444782 - AluSq SINE Alu -14 299 2 1643 192 18 4 chr3 175592388 175592705 -42444453 - AluJb SINE Alu 0 321 1 2229 114 7 0 chr3 175593218 175593517 -42443641 - AluSq SINE Alu -12 301 1 21 36 0 0 chr3 175593818 175593846 -42443312 + AT_rich Low_complexity Low_complexity 1 28 0 286 256 184 48 chr3 175593997 175594122 -42443036 - MIR3 SINE MIR -29 179 38 196 339 0 0 chr3 175594152 175594214 -42442944 - L2 LINE L2 0 3313 3252 863 295 104 21 chr3 175594822 175595304 -42441854 - L2 LINE L2 -815 2499 1978 330 309 95 46 chr3 175595876 175596138 -42441020 - L2 LINE L2 -2882 432 158 348 89 0 0 chr3 175596821 175596866 -42440292 + U7 snRNA snRNA 1 45 -18 919 234 21 16 chr3 175597031 175597219 -42439939 - MER5A DNA MER1_type 0 189 1 2704 101 2 56 chr3 175597276 175597672 -42439486 - THE1C LTR MaLR 0 375 1 546 73 0 12 chr3 175597672 175597754 -42439404 - THE1C-int LTR MaLR 0 1580 1500 21 0 0 0 chr3 175597754 175597775 -42439383 + AT_rich Low_complexity Low_complexity 1 21 0 884 141 0 0 chr3 175597779 175597907 -42439251 - THE1C-int LTR MaLR -568 1012 885 796 159 9 0 chr3 175597907 175598020 -42439138 - AluSc SINE Alu -44 265 152 10080 117 30 9 chr3 175598026 175599503 -42437655 - THE1C-int LTR MaLR -72 1508 1 2647 122 16 3 chr3 175599505 175599873 -42437285 - THE1C LTR MaLR -2 373 1 2173 115 0 20 chr3 175600405 175600709 -42436449 - AluSc SINE Alu -11 298 1 2333 95 0 0 chr3 175600913 175601207 -42435951 - AluSg SINE Alu -16 294 1 189 107 0 0 chr3 175601337 175601365 -42435793 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 1504 148 9 0 chr3 175601365 175601594 -42435564 - AluJb SINE Alu -8 304 74 1305 225 55 52 chr3 175602057 175602837 -42434321 - L1M3 LINE L1 -494 5674 4885 2204 96 7 0 chr3 175602974 175603265 -42433893 - AluSc SINE Alu -16 293 1 642 200 159 0 chr3 175603266 175603411 -42433747 - MER58A DNA MER1_type -9 215 48 232 284 0 0 chr3 175603462 175603529 -42433629 - L1M3 LINE L1 -1355 4791 4725 360 261 87 67 chr3 175603621 175603816 -42433342 - MARNA DNA Mariner -373 213 15 2326 95 3 3 chr3 175604973 175605278 -42431880 - AluSx SINE Alu -4 308 4 271 331 113 25 chr3 175606667 175606827 -42430331 + MIR3 SINE MIR 30 203 -5 1504 235 77 25 chr3 175606885 175607327 -42429831 + MLT1C LTR MaLR 1 465 -2 217 246 49 16 chr3 175607416 175607477 -42429681 + MIR SINE MIR 93 155 -107 253 305 63 0 chr3 175607521 175607616 -42429542 + MIR SINE MIR 152 252 -10 917 169 7 13 chr3 175607840 175607992 -42429166 - Tigger2 DNA MER2_type -10 2708 2558 2503 93 0 18 chr3 175607992 175608324 -42428834 - MER1A DNA MER1_type 0 529 204 6901 126 79 16 chr3 175608337 175609510 -42427648 + MER52C LTR ERV1 32 1278 0 1114 145 0 0 chr3 175609510 175609666 -42427492 - MER1A DNA MER1_type -320 207 52 8244 127 52 34 chr3 175609684 175611099 -42426059 - Tigger2 DNA MER2_type -144 2574 1135 714 194 31 0 chr3 175611099 175611228 -42425930 - AluJb SINE Alu -179 133 1 7375 119 35 6 chr3 175611228 175611581 -42425577 - Tigger2 DNA MER2_type -1571 1147 806 2438 87 0 7 chr3 175611581 175611890 -42425268 - AluSc SINE Alu -2 307 1 7375 119 35 6 chr3 175611890 175612649 -42424509 - Tigger2 DNA MER2_type -1912 806 3 755 142 0 16 chr3 175614371 175614498 -42422660 - AluJb SINE Alu -186 126 2 2350 101 0 7 chr3 175614614 175614912 -42422246 + AluSx SINE Alu 1 296 -16 1859 171 3 0 chr3 175617144 175617442 -42419716 - AluJo SINE Alu -13 299 1 2013 86 0 4 chr3 175617750 175618005 -42419153 - AluSq SINE Alu -59 254 1 2498 160 54 9 chr3 175618061 175618505 -42418653 + LTR24 LTR ERV1 4 467 0 235 191 95 67 chr3 175619939 175620044 -42417114 - MIR SINE MIR -96 166 59 934 131 12 6 chr3 175622085 175622253 -42414905 - L1MB3 LINE L1 0 6183 6015 1453 117 40 36 chr3 175622253 175622500 -42414658 - MER1B DNA MER1_type 0 339 132 351 220 16 10 chr3 175622574 175622676 -42414482 - L1MB3 LINE L1 -152 6022 5922 292 277 98 31 chr3 175622674 175622992 -42414166 - L1M4 LINE L1 -2218 3928 3590 * 315 231 77 33 chr3 175622996 175623087 -42414071 - MLT1E LTR MaLR -498 95 1 1339 204 20 4 chr3 175623130 175623380 -42413778 + AluJb SINE Alu 1 254 -58 246 128 0 0 chr3 175623764 175623803 -42413355 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 2279 107 3 0 chr3 175623976 175624276 -42412882 - AluSx SINE Alu -11 301 1 2289 97 7 3 chr3 175626618 175626917 -42410241 - AluSx SINE Alu -12 300 1 700 171 0 17 chr3 175631344 175631461 -42405697 - AluJb SINE Alu -195 117 3 2607 71 0 0 chr3 175631705 175632014 -42405144 - AluY SINE Alu -2 309 1 2356 100 0 7 chr3 175632487 175632787 -42404371 + AluSx SINE Alu 1 298 -14 648 118 0 0 chr3 175632852 175632945 -42404213 - L1PBa LINE L1 -6135 728 636 1216 146 5 0 chr3 175632950 175633142 -42404016 - L1PBa LINE L1 -6668 195 3 2091 107 28 3 chr3 175634345 175634636 -42402522 - AluSq SINE Alu -14 299 2 29 114 0 0 chr3 175634638 175634682 -42402476 + AT_rich Low_complexity Low_complexity 1 44 0 1713 187 18 3 chr3 175634682 175634965 -42402193 - AluJb SINE Alu -25 287 1 2244 114 7 0 chr3 175635478 175635777 -42401381 - AluSq SINE Alu -12 301 1 21 36 0 0 chr3 175636078 175636106 -42401052 + AT_rich Low_complexity Low_complexity 1 28 0 269 248 133 57 chr3 175636277 175636382 -42400776 - MIR SINE MIR -58 150 38 729 295 104 21 chr3 175637082 175637564 -42399594 - L2 LINE L2 -815 2499 1978 276 321 88 38 chr3 175638136 175638398 -42398760 - L2 LINE L2 -2882 432 158 345 89 0 0 chr3 175639081 175639126 -42398032 + U7 snRNA snRNA 1 45 -18 862 234 21 16 chr3 175639291 175639479 -42397679 - MER5A DNA MER1_type 0 189 1 2558 101 2 56 chr3 175639536 175639932 -42397226 - THE1C LTR MaLR 0 375 1 550 73 0 12 chr3 175639932 175640014 -42397144 - THE1C-int LTR MaLR 0 1580 1500 21 0 0 0 chr3 175640014 175640035 -42397123 + AT_rich Low_complexity Low_complexity 1 21 0 6477 121 43 11 chr3 175640039 175641020 -42396138 - THE1C-int LTR MaLR -568 1012 1 2503 122 16 3 chr3 175641022 175641390 -42395768 - THE1C LTR MaLR -2 373 1 2190 115 0 20 chr3 175641922 175642226 -42394932 - AluSc SINE Alu -11 298 1 2351 95 0 0 chr3 175642430 175642724 -42394434 - AluSg SINE Alu -16 294 1 189 107 0 0 chr3 175642854 175642882 -42394276 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 1511 148 9 0 chr3 175642882 175643111 -42394047 - AluJb SINE Alu -8 304 74 1279 223 56 53 chr3 175643574 175644354 -42392804 - L1M3 LINE L1 -494 5674 4885 2220 96 7 0 chr3 175644491 175644782 -42392376 - AluSc SINE Alu -16 293 1 634 200 159 0 chr3 175644783 175644928 -42392230 - MER58A DNA MER1_type -9 215 48 228 284 0 0 chr3 175644979 175645046 -42392112 - L1M3 LINE L1 -1355 4791 4725 347 261 87 67 chr3 175645138 175645333 -42391825 - MARNA DNA Mariner -373 213 15 2056 56 4 0 chr3 175647230 175647479 -42389679 + AluSp SINE Alu 56 305 -8 25 105 0 0 chr3 175648783 175648878 -42388280 + AT_rich Low_complexity Low_complexity 1 95 0 773 246 158 80 chr3 175649305 175649704 -42387454 - MLT1K LTR MaLR -10 578 149 481 246 40 0 chr3 175649811 175649937 -42387221 - MIR SINE MIR -7 255 125 21 0 0 0 chr3 175650021 175650042 -42387116 + AT_rich Low_complexity Low_complexity 1 21 0 1348 87 0 6 chr3 175650427 175650599 -42386559 - AluSg/x SINE Alu -12 300 130 1658 100 23 0 chr3 175650762 175650982 -42386176 - MER30 DNA MER1_type -5 225 1 1557 95 63 53 chr3 175651518 175651803 -42385355 - L1MB3 LINE L1 -31 6152 5865 375 144 62 52 chr3 175651958 175652055 -42385103 + Tigger5 DNA MER2_type 1 98 -2225 1759 235 99 42 chr3 175652055 175652116 -42385042 - L2 LINE L2 -547 2767 2711 1719 172 3 10 chr3 175652116 175652407 -42384751 - AluJo SINE Alu -23 289 1 1759 235 99 42 chr3 175652407 175652992 -42384166 - L2 LINE L2 -603 2711 2084 201 246 18 0 chr3 175653212 175653269 -42383889 + L2 LINE L2 87 144 -3170 2171 108 3 0 chr3 175653515 175653803 -42383355 - AluY SINE Alu -21 290 2 2479 173 79 5 chr3 175653913 175654358 -42382800 - MER66A LTR ERV1 0 478 1 562 257 29 0 chr3 175654454 175654590 -42382568 - MLT1J LTR MaLR -369 142 3 411 287 35 69 chr3 175654638 175654748 -42382410 + L2 LINE L2 271 374 -2940 2443 93 3 0 chr3 175654748 175655059 -42382099 - AluSp SINE Alu -1 312 1 411 287 35 69 chr3 175655059 175655122 -42382036 + L2 LINE L2 374 438 -2876 5787 20 0 0 chr3 175655213 175655863 -42381295 + L1PA3 LINE L1 5505 6154 -1 847 201 7 0 chr3 175655937 175656086 -42381072 + HERVL74 LTR ERVL 1617 1766 -3919 1366 234 52 29 chr3 175656087 175656471 -42380687 - MLT1D LTR MaLR 0 505 113 255 153 92 0 chr3 175656538 175656636 -42380522 + (TA)n Simple_repeat Simple_repeat 2 108 0 383 175 16 0 chr3 175656636 175656699 -42380459 - MLT1D LTR MaLR -440 65 2 666 313 0 11 chr3 175656699 175656964 -42380194 - L1M4 LINE L1 -2350 3796 3535 819 281 150 11 chr3 175656989 175657370 -42379788 + L2 LINE L2 546 979 -2335 1606 271 53 61 chr3 175657371 175657671 -42379487 + L2 LINE L2 2177 2478 -836 2500 70 0 0 chr3 175657671 175657970 -42379188 - AluSg SINE Alu -11 299 1 1606 271 53 61 chr3 175657970 175658391 -42378767 + L2 LINE L2 2478 2892 -422 581 263 78 15 chr3 175658390 175658595 -42378563 - L2 LINE L2 -593 2721 2504 * 2351 93 0 3 chr3 175660931 175661231 -42375927 - AluSx SINE Alu -13 299 1 413 218 69 4 chr3 175661523 175661726 -42375432 + MER5C DNA MER1_type 39 324 0 234 0 0 0 chr3 175663928 175663954 -42373204 + (TA)n Simple_repeat Simple_repeat 2 27 0 1785 162 14 21 chr3 175663957 175664241 -42372917 - AluJo SINE Alu -30 282 1 285 265 128 8 chr3 175664565 175664682 -42372476 - MLT1K LTR MaLR 0 588 458 272 191 48 95 chr3 175664828 175664892 -42372266 - MLT1K LTR MaLR -339 249 188 1812 124 7 18 chr3 175664892 175665165 -42371993 + AluSx SINE Alu 36 305 -7 272 191 48 95 chr3 175665165 175665184 -42371974 - MLT1K LTR MaLR -400 188 170 234 115 58 58 chr3 175665351 175665403 -42371755 + MIR SINE MIR 182 233 -29 4316 209 71 48 chr3 175665474 175666779 -42370379 - L1MC4 LINE L1 -3 8039 6704 29 0 0 0 chr3 175667464 175667493 -42369665 + AT_rich Low_complexity Low_complexity 1 29 0 2352 214 48 16 chr3 175668123 175668670 -42368488 - MLT1F1 LTR MaLR -3 564 1 418 324 102 38 chr3 175668682 175668975 -42368183 + L2 LINE L2 1579 1890 -1424 771 181 13 0 chr3 175670760 175670909 -42366249 - AluSc SINE Alu -2 307 157 812 123 9 0 chr3 175670911 175671025 -42366133 - AluJb SINE Alu -192 120 6 3606 120 13 8 chr3 175671220 175671744 -42365414 + MER1A DNA MER1_type 1 527 0 950 129 0 0 chr3 175671986 175672118 -42365040 + AluJb SINE Alu 1 132 -180 295 299 127 0 chr3 175672119 175672253 -42364905 - L1M4 LINE L1 -1027 5119 4969 1829 166 3 3 chr3 175673452 175673742 -42363416 + AluJb SINE Alu 1 290 -22 192 219 0 0 chr3 175674906 175674947 -42362211 - MIR SINE MIR -33 229 189 38 22 0 0 chr3 175675548 175675593 -42361565 + AT_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr3 175675872 175675900 -42361258 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr3 175676814 175676834 -42360324 + (T)n Simple_repeat Simple_repeat 1 20 0 189 121 0 0 chr3 175677109 175677142 -42360016 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 3591 117 89 14 chr3 175677888 175678519 -42358639 + L1MA3 LINE L1 5628 6305 0 251 232 0 18 chr3 175678524 175678580 -42358578 - MER5B DNA MER1_type -123 55 1 682 271 29 87 chr3 175679363 175679640 -42357518 + MIR SINE MIR 1 261 -1 34274 72 8 11 chr3 175680181 175685730 -42351428 - L1PA6 LINE L1 -2 6152 623 698 91 0 0 chr3 175685728 175685816 -42351342 - L1PA6 LINE L1 -6048 98 11 * 408 311 41 8 chr3 175686226 175686348 -42350810 - L2 LINE L2 0 3272 3147 28 0 0 0 chr3 175686370 175686398 -42350760 + AT_rich Low_complexity Low_complexity 1 28 0 416 105 0 0 chr3 175686540 175686597 -42350561 + AluJ/FLAM SINE Alu 1 57 -255 369 200 0 0 chr3 175686603 175686663 -42350495 - MER2 DNA MER2_type -285 60 1 1566 164 25 31 chr3 175686881 175687206 -42349952 + AluJb SINE Alu 1 323 0 1183 193 25 0 chr3 175687885 175688087 -42349071 + AluJb SINE Alu 87 293 -19 1670 200 3 13 chr3 175688373 175688678 -42348480 + AluJo SINE Alu 1 302 -10 27 29 0 0 chr3 175688947 175688981 -42348177 + AT_rich Low_complexity Low_complexity 1 34 0 1597 201 7 7 chr3 175689643 175689941 -42347217 + AluJo SINE Alu 1 298 -14 2192 106 0 13 chr3 175690514 175690826 -42346332 - AluY SINE Alu -3 308 1 31 76 0 0 chr3 175691199 175691265 -42345893 + AT_rich Low_complexity Low_complexity 1 66 0 358 302 145 76 chr3 175691315 175691659 -42345499 - L2 LINE L2 -2 3270 2903 337 362 63 36 chr3 175692030 175692364 -42344794 - L2 LINE L2 -438 2876 2534 278 374 28 22 chr3 175692502 175692681 -42344477 - MER5A DNA MER1_type -8 181 2 2166 43 91 14 chr3 175692900 175693176 -42343982 + AluY SINE Alu 1 297 -14 2168 118 0 0 chr3 175693335 175693623 -42343535 - AluSx SINE Alu -24 288 1 1903 155 0 25 chr3 175693665 175693982 -42343176 - AluJb SINE Alu -3 309 1 207 219 0 0 chr3 175693984 175694025 -42343133 + T-rich Low_complexity Low_complexity 1 41 0 285 258 11 0 chr3 175694160 175694249 -42342909 - HAL1b LINE L1 -831 517 428 602 260 59 46 chr3 175694354 175694642 -42342516 - MLT1H LTR MaLR -250 299 3 266 257 118 7 chr3 175694800 175694944 -42342214 - HAL1 LINE L1 -105 2402 2243 309 220 83 38 chr3 175694950 175695082 -42342076 - HAL1 LINE L1 -296 2211 2074 319 225 43 82 chr3 175695120 175695192 -42341966 - HAL1 LINE L1 -547 1960 1887 2118 83 0 7 chr3 175695192 175695469 -42341689 + AluY SINE Alu 18 292 -19 319 225 43 82 chr3 175695469 175695786 -42341372 - HAL1 LINE L1 -620 1887 1509 1750 171 3 20 chr3 175695980 175696279 -42340879 - AluJb SINE Alu -18 294 1 1180 114 175 48 chr3 175696544 175696772 -42340386 - AluSg1 SINE Alu -9 300 44 2317 99 0 3 chr3 175697331 175697643 -42339515 - AluY SINE Alu 0 311 1 214 211 122 102 chr3 175697852 175697999 -42339159 - L2 LINE L2 -86 3227 3078 2064 127 10 0 chr3 175698193 175698485 -42338673 - AluSp SINE Alu -18 295 1 2115 114 65 31 chr3 175699287 175699639 -42337519 - THE1B LTR MaLR 0 364 1 1562 173 14 28 chr3 175701757 175702046 -42335112 - AluJb SINE Alu -25 287 3 2399 120 0 0 chr3 175702290 175702599 -42334559 - AluY SINE Alu -2 309 1 381 262 255 0 chr3 175703162 175703311 -42333847 - MIR SINE MIR -61 201 15 1772 155 28 0 chr3 175703711 175704001 -42333157 + AluSx SINE Alu 1 298 -14 22 35 0 0 chr3 175704021 175704050 -42333108 + AT_rich Low_complexity Low_complexity 1 29 0 415 165 89 0 chr3 175704521 175704600 -42332558 - Tigger5 DNA MER2_type -1 2322 2237 277 259 0 0 chr3 175704610 175704664 -42332494 - Tigger5 DNA MER2_type -2268 55 2 2173 90 0 7 chr3 175706904 175707194 -42329964 - AluSg SINE Alu -22 288 1 2375 86 7 0 chr3 175709099 175709402 -42327756 + AluSg SINE Alu 1 305 -5 1853 172 0 10 chr3 175709467 175709770 -42327388 + AluJb SINE Alu 1 300 -12 1574 152 34 15 chr3 175711012 175711149 -42326009 - AluSx SINE Alu -43 269 136 231 88 0 0 chr3 175711149 175711183 -42325975 + (TG)n Simple_repeat Simple_repeat 2 35 0 1574 152 34 15 chr3 175711183 175711309 -42325849 - AluSx SINE Alu -176 136 1 380 308 111 23 chr3 175711717 175711889 -42325269 + L2 LINE L2 2867 3053 -260 282 292 42 0 chr3 175711889 175711961 -42325197 + L2 LINE L2 3212 3286 -27 21 36 0 0 chr3 175712492 175712520 -42324638 + AT_rich Low_complexity Low_complexity 1 28 0 374 235 250 29 chr3 175712644 175712780 -42324378 + MIR SINE MIR 3 168 -94 241 323 134 5 chr3 175713283 175713469 -42323689 + L1ME LINE L1 5490 5699 -422 285 29 0 0 chr3 175714060 175714094 -42323064 + (CA)n Simple_repeat Simple_repeat 2 35 0 2117 71 0 11 chr3 175714319 175714587 -42322571 - AluSg SINE Alu -45 265 1 3984 173 100 18 chr3 175715749 175717357 -42319801 + L1MB7 LINE L1 4398 6134 -50 2183 98 0 0 chr3 175717376 175717650 -42319508 - AluSg SINE Alu -36 274 1 2350 68 3 3 chr3 175717885 175718178 -42318980 + AluY SINE Alu 1 293 -18 313 293 107 21 chr3 175718860 175719000 -42318158 + LTR33 LTR ERVL 57 208 -313 283 310 80 9 chr3 175719008 175719121 -42318037 + LTR33 LTR ERVL 323 443 -78 691 191 7 29 chr3 175719152 175719288 -42317870 - FLAM_A SINE Alu 0 133 1 271 320 160 11 chr3 175722148 175722329 -42314829 - MIR SINE MIR -46 216 9 1283 220 37 4 chr3 175723749 175724022 -42313136 - AluJo SINE Alu -30 282 1 593 226 105 8 chr3 175724245 175724378 -42312780 + FRAM SINE Alu 1 146 -30 25 0 0 0 chr3 175725087 175725112 -42312046 + AT_rich Low_complexity Low_complexity 1 25 0 812 173 0 0 chr3 175725836 175725969 -42311189 + FLAM_C SINE Alu 9 141 -2 796 199 45 6 chr3 175726003 175726159 -42310999 + AluJb SINE Alu 127 288 -24 321 130 0 37 chr3 175726328 175726382 -42310776 - 7SK RNA RNA -140 53 2 874 115 0 0 chr3 175726407 175726520 -42310638 - FLAM_C SINE Alu -18 125 13 1097 204 4 36 chr3 175728766 175728991 -42308167 - MER20 DNA MER1_type -1 218 1 1691 171 0 31 chr3 175729029 175729322 -42307836 - AluJo SINE Alu -23 289 6 2442 31 3 3 chr3 175729819 175730105 -42307053 - AluY SINE Alu -3 308 23 23 0 0 0 chr3 175731516 175731539 -42305619 + AT_rich Low_complexity Low_complexity 1 23 0 1828 163 21 0 chr3 175731553 175731841 -42305317 - AluJb SINE Alu -18 294 1 2027 56 4 0 chr3 175741146 175741395 -42295763 + AluSp SINE Alu 56 305 -8 25 105 0 0 chr3 175742700 175742795 -42294363 + AT_rich Low_complexity Low_complexity 1 95 0 761 246 158 80 chr3 175743222 175743621 -42293537 - MLT1K LTR MaLR -10 578 149 542 255 28 14 chr3 175743728 175743869 -42293289 - MIR SINE MIR -7 255 113 21 0 0 0 chr3 175743938 175743959 -42293199 + AT_rich Low_complexity Low_complexity 1 21 0 308 320 119 27 chr3 175744118 175744337 -42292821 - L1MC4a LINE L1 -1754 6054 5816 1330 87 0 6 chr3 175744344 175744516 -42292642 - AluSg/x SINE Alu -12 300 130 1623 100 23 0 chr3 175744679 175744899 -42292259 - MER30 DNA MER1_type -5 225 1 1533 100 37 48 chr3 175745450 175745720 -42291438 - L1MB3 LINE L1 -52 6131 5865 372 144 62 52 chr3 175745875 175745972 -42291186 + Tigger5 DNA MER2_type 1 98 -2225 1999 233 99 42 chr3 175745972 175746033 -42291125 - L2 LINE L2 -547 2767 2711 1706 172 3 10 chr3 175746033 175746324 -42290834 - AluJo SINE Alu -23 289 1 1999 233 99 42 chr3 175746324 175746909 -42290249 - L2 LINE L2 -603 2711 2084 217 246 18 0 chr3 175747129 175747186 -42289972 + L2 LINE L2 87 144 -3170 2148 108 3 0 chr3 175747432 175747720 -42289438 - AluY SINE Alu -21 290 2 2427 173 79 5 chr3 175747830 175748275 -42288883 - MER66A LTR ERV1 0 478 1 552 265 29 0 chr3 175748371 175748507 -42288651 - MLT1J LTR MaLR -369 142 3 456 276 111 92 chr3 175748555 175748665 -42288493 + L2 LINE L2 271 377 -2937 2412 91 3 0 chr3 175748665 175748973 -42288185 - AluSp SINE Alu -1 312 4 456 276 111 92 chr3 175748973 175749123 -42288035 + L2 LINE L2 377 536 -2778 5668 20 0 0 chr3 175749131 175749781 -42287377 + L1PA3 LINE L1 5505 6154 -1 832 201 7 0 chr3 175749855 175750004 -42287154 + HERVL74 LTR ERVL 1617 1766 -3919 1356 242 52 29 chr3 175750005 175750389 -42286769 - MLT1D LTR MaLR 0 505 113 255 153 92 0 chr3 175750456 175750554 -42286604 + (TA)n Simple_repeat Simple_repeat 2 108 0 381 175 16 0 chr3 175750554 175750617 -42286541 - MLT1D LTR MaLR -440 65 2 639 313 0 11 chr3 175750617 175750882 -42286276 - L1M4 LINE L1 -2350 3796 3535 960 281 150 11 chr3 175750907 175751288 -42285870 + L2 LINE L2 546 979 -2335 1849 271 53 61 chr3 175751289 175751589 -42285569 + L2 LINE L2 2177 2478 -836 2455 70 0 0 chr3 175751589 175751888 -42285270 - AluSg SINE Alu -11 299 1 1849 271 53 61 chr3 175751888 175752309 -42284849 + L2 LINE L2 2478 2892 -422 644 263 78 15 chr3 175752308 175752513 -42284645 - L2 LINE L2 -593 2721 2504 * 2351 93 0 3 chr3 175754849 175755149 -42282009 - AluSx SINE Alu -13 299 1 413 218 69 4 chr3 175755441 175755644 -42281514 + MER5C DNA MER1_type 39 324 0 234 0 0 0 chr3 175757846 175757872 -42279286 + (TA)n Simple_repeat Simple_repeat 2 27 0 1740 169 14 21 chr3 175757875 175758159 -42278999 - AluJo SINE Alu -30 282 1 1558 179 0 4 chr3 175758435 175758698 -42278460 - AluJo SINE Alu -50 262 1 1182 182 68 0 chr3 175758993 175759213 -42277945 - MER46A DNA MER2_type -1 235 1 288 0 0 50 chr3 175759348 175759388 -42277770 + (TTTTG)n Simple_repeat Simple_repeat 3 180 0 2199 110 0 0 chr3 175759388 175759670 -42277488 - AluSx SINE Alu -1 321 1 1426 132 158 38 chr3 175759833 175760099 -42277059 + AluSx SINE Alu 6 303 -9 1750 171 3 20 chr3 175760364 175760663 -42276495 + AluJb SINE Alu 1 294 -18 319 225 43 82 chr3 175760857 175761174 -42275984 + HAL1 LINE L1 1509 1887 -620 2118 83 0 7 chr3 175761174 175761451 -42275707 - AluY SINE Alu -19 292 18 319 225 43 82 chr3 175761451 175761523 -42275635 + HAL1 LINE L1 1887 1960 -547 309 220 83 38 chr3 175761561 175761693 -42275465 + HAL1 LINE L1 2074 2211 -296 241 274 14 0 chr3 175761770 175761843 -42275315 + HAL1 LINE L1 2329 2402 -105 602 260 59 46 chr3 175762001 175762289 -42274869 + MLT1H LTR MaLR 3 299 -250 285 258 11 0 chr3 175762394 175762483 -42274675 + HAL1b LINE L1 428 517 -831 207 219 0 0 chr3 175762618 175762659 -42274499 + A-rich Low_complexity Low_complexity 1 41 0 1587 141 17 4 chr3 175762661 175762902 -42274256 + AluJb SINE Alu 1 244 -68 876 220 118 36 chr3 175763259 175763563 -42273595 + LTR26B LTR ERV1 203 531 0 1876 150 39 0 chr3 175763991 175764277 -42272881 - AluSx SINE Alu -15 297 1 1724 85 0 0 chr3 175764426 175764637 -42272521 + AluSx SINE Alu 2 212 -100 248 125 0 21 chr3 175764638 175764686 -42272472 + AluSx SINE Alu 248 294 -6 24 67 0 0 chr3 175764756 175764801 -42272357 + AT_rich Low_complexity Low_complexity 1 45 0 413 281 62 38 chr3 175765406 175765566 -42271592 - MIR SINE MIR -12 250 87 1827 119 74 0 chr3 175765667 175765936 -42271222 - AluSx SINE Alu -23 289 1 330 303 26 113 chr3 175766224 175766419 -42270739 + L2 LINE L2 315 492 -2822 460 322 170 39 chr3 175766818 175767278 -42269880 + L2 LINE L2 2210 2729 -585 679 123 25 66 chr3 175767525 175767647 -42269511 + MER2 DNA MER2_type 3 119 -226 323 340 57 25 chr3 175767799 175768043 -42269115 - L2 LINE L2 -995 2319 2068 748 199 186 32 chr3 175768074 175768446 -42268712 - L1MC5 LINE L1 -44 7917 7489 244 228 30 59 chr3 175768592 175768693 -42268465 - LTR48B LTR ERV1 -546 98 1 5908 97 7 19 chr3 175768953 175769630 -42267528 - L1PA12 LINE L1 -10 6158 5474 2256 112 0 0 chr3 175769630 175769934 -42267224 - AluSx SINE Alu -8 304 1 5908 97 7 19 chr3 175769934 175770746 -42266412 - L1PA12 LINE L1 -694 5474 4684 4670 78 17 1 chr3 175770746 175771438 -42265720 + L1P LINE L1 2867 3569 -2577 665 68 81 0 chr3 175771544 175771851 -42265307 + (TA)n Simple_repeat Simple_repeat 1 331 0 734 49 54 18 chr3 175771863 175772088 -42265070 + (TA)n Simple_repeat Simple_repeat 1 233 0 207 203 324 0 chr3 175772419 175772493 -42264665 + MER91C DNA MER1_type 22 119 -21 2008 130 0 29 chr3 175772575 175772890 -42264268 + AluSx SINE Alu 1 306 -6 1989 116 18 18 chr3 175772890 175773217 -42263941 + L1MA2 LINE L1 5977 6303 -1 24 0 0 0 chr3 175773462 175773486 -42263672 + AT_rich Low_complexity Low_complexity 1 24 0 2001 134 10 0 chr3 175774257 175774547 -42262611 + AluSx SINE Alu 1 293 -19 2013 172 77 8 chr3 175774695 175775097 -42262061 + LTR26B LTR ERV1 1 430 -101 200 205 0 0 chr3 175775737 175775776 -42261382 + (CTG)n Simple_repeat Simple_repeat 1 39 0 5333 128 37 6 chr3 175776629 175777721 -42259437 - L1PA6 LINE L1 -2 6152 5030 511 166 29 7 chr3 175778012 175778151 -42259007 + (TA)n Simple_repeat Simple_repeat 1 142 0 704 246 125 47 chr3 175778151 175778646 -42258512 + L1ME4a LINE L1 5545 6078 -43 2212 110 0 0 chr3 175778865 175779155 -42258003 - AluSc SINE Alu -19 290 1 2195 117 0 3 chr3 175779258 175779557 -42257601 - AluSx SINE Alu -14 298 1 2178 104 3 3 chr3 175780224 175780523 -42256635 - AluSx SINE Alu -13 299 1 2623 192 35 29 chr3 175780565 175781186 -42255972 - L1MB7 LINE L1 0 6184 5560 471 216 29 0 chr3 175781186 175781288 -42255870 - L1ME LINE L1 -5935 135 31 239 256 67 0 chr3 175781460 175781543 -42255615 + L1MC4a LINE L1 5314 5405 -2403 206 81 27 0 chr3 175781543 175781580 -42255578 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 638 299 70 19 chr3 175781669 175782045 -42255113 + L1MC4a LINE L1 5525 5919 -202 680 295 36 20 chr3 175782251 175782502 -42254656 + L1M4 LINE L1 6 260 -6282 1935 255 66 5 chr3 175782711 175783275 -42253883 + L1M4 LINE L1 581 1178 -5364 1739 142 46 14 chr3 175783287 175783633 -42253525 - L1MA7 LINE L1 0 6291 5935 6921 123 13 10 chr3 175783643 175783970 -42253188 - L1MA2 LINE L1 -1 6303 5979 1987 121 0 24 chr3 175783970 175784267 -42252891 - AluSx SINE Alu -4 308 19 6921 123 13 10 chr3 175784267 175785341 -42251817 - L1MA2 LINE L1 -325 5979 4896 414 211 204 0 chr3 175785337 175785479 -42251679 + L1M4 LINE L1 1162 1332 -5210 * 365 304 96 0 chr3 175785597 175785722 -42251436 + L1ME LINE L1 5508 5644 -477 471 280 187 18 chr3 175785773 175785998 -42251160 - L2 LINE L2 -4 3309 3047 21 82 0 0 chr3 175786204 175786253 -42250905 + AT_rich Low_complexity Low_complexity 1 49 0 207 286 44 55 chr3 175787455 175787546 -42249612 + MIR3 SINE MIR 109 198 -10 1461 169 35 23 chr3 175788413 175788673 -42248485 + AluJb SINE Alu 36 298 -14 2162 244 99 9 chr3 175788805 175789363 -42247795 + MLT1E2 LTR MaLR 13 620 -6 479 167 133 0 chr3 175790493 175790613 -42246545 - L1ME3 LINE L1 -1 6161 6026 670 233 36 10 chr3 175790624 175790817 -42246341 + MER34B LTR ERV1 364 561 -4 1738 130 3 89 chr3 175791044 175791368 -42245790 - AluJb SINE Alu -16 296 1 1438 161 24 12 chr3 175791370 175791625 -42245533 - L1M3f LINE L1 -5070 258 1 447 316 96 45 chr3 175791642 175792055 -42245103 + HAL1b LINE L1 99 560 -788 2031 113 10 10 chr3 175792055 175792346 -42244812 - AluSg SINE Alu -19 291 1 447 316 96 45 chr3 175792346 175792600 -42244558 + HAL1b LINE L1 560 800 -548 204 40 0 0 chr3 175793081 175793106 -42244052 + (CA)n Simple_repeat Simple_repeat 2 26 0 382 312 120 13 chr3 175793111 175793345 -42243813 + L1MC4a LINE L1 5977 6235 -1573 3072 155 60 2 chr3 175793454 175794040 -42243118 + L1MB7 LINE L1 5563 6182 -2 2154 111 30 0 chr3 175794168 175794466 -42242692 + AluSx SINE Alu 1 307 -5 257 200 0 18 chr3 175794487 175794542 -42242616 + FLAM_A SINE Alu 74 127 -6 536 215 88 95 chr3 175794661 175794975 -42242183 + L1MC5 LINE L1 6617 6907 -901 2155 98 28 0 chr3 175794975 175795261 -42241897 + AluSg SINE Alu 1 294 -16 664 236 114 20 chr3 175795317 175795563 -42241595 - L1MC5 LINE L1 -80 7881 7613 7129 133 34 6 chr3 175795587 175796778 -42240380 + Tigger3b DNA MER2_type 4 1228 -3 815 189 58 49 chr3 175796778 175797021 -42240137 + L1MC5 LINE L1 7022 7266 -695 646 270 89 18 chr3 175797234 175797495 -42239663 - MER54A LTR ERVL -285 359 113 1071 179 92 38 chr3 175797521 175797733 -42239425 + L1MC5 LINE L1 7263 7503 -458 1604 181 28 14 chr3 175797733 175798021 -42239137 + AluJo SINE Alu 1 292 -20 1071 179 92 38 chr3 175798021 175798154 -42239004 + L1MC5 LINE L1 7503 7627 -334 2993 158 37 12 chr3 175798207 175798721 -42238437 + Tigger7 DNA MER2_type 2 528 -205 504 160 11 32 chr3 175798712 175798806 -42238352 + Tigger7 DNA MER2_type 2496 2587 0 * 574 178 30 81 chr3 175798807 175798963 -42238195 + L1MC5 LINE L1 7723 7869 -92 920 197 33 0 chr3 175798963 175799146 -42238012 + MER5A DNA MER1_type 1 189 0 574 178 30 81 chr3 175799146 175799186 -42237972 + L1MC5 LINE L1 7869 7909 -52 448 250 38 56 chr3 175799392 175799552 -42237606 - MER5B DNA MER1_type -16 162 6 714 228 70 0 chr3 175799561 175799719 -42237439 - MER5A DNA MER1_type -12 177 9 1448 178 24 70 chr3 175799775 175800145 -42237013 - MER39 LTR ERV1 0 707 355 244 228 30 59 chr3 175800168 175800269 -42236889 - LTR48B LTR ERV1 -546 98 1 10707 132 8 12 chr3 175800529 175801206 -42235952 - L1PA12 LINE L1 -10 6158 5480 2256 112 0 0 chr3 175801206 175801510 -42235648 - AluSx SINE Alu -8 304 1 10707 132 8 12 chr3 175801510 175803418 -42233740 - L1PA12 LINE L1 -688 5480 3586 475 116 0 12 chr3 175803527 175803613 -42233545 - L1PA13 LINE L1 -1 6162 6078 304 53 0 0 chr3 175803614 175803652 -42233506 + L1PA13 LINE L1 6033 6070 -93 31 68 0 0 chr3 175803671 175803730 -42233428 + AT_rich Low_complexity Low_complexity 1 59 0 2060 135 28 14 chr3 175803754 175804109 -42233049 + MER46B DNA MER2_type 1 235 -1 15101 33 1 1 chr3 175804348 175806183 -42230975 - L1PA3 LINE L1 -1445 4701 2867 7408 42 0 0 chr3 175806183 175807668 -42229490 + L1PA3 LINE L1 4684 6168 0 29 0 0 0 chr3 175807853 175807882 -42229276 + AT_rich Low_complexity Low_complexity 1 29 0 1524 178 78 0 chr3 175807898 175808207 -42228951 + MER44D DNA MER2_type 3 605 -4 21 36 0 0 chr3 175809607 175809635 -42227523 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 175810341 175810363 -42226795 + AT_rich Low_complexity Low_complexity 1 22 0 1369 234 50 67 chr3 175810427 175810981 -42226177 - MER39 LTR ERV1 0 707 1 1676 225 76 40 chr3 175811446 175812024 -42225134 - L1MC5 LINE L1 -32 7929 7331 35 63 0 0 chr3 175812338 175812401 -42224757 + AT_rich Low_complexity Low_complexity 1 63 0 444 243 27 36 chr3 175812488 175812599 -42224559 - L2 LINE L2 0 3313 3204 826 304 75 14 chr3 175812672 175812965 -42224193 - MLT1K LTR MaLR -58 530 220 2383 254 30 12 chr3 175813159 175813726 -42223432 - MLT1E LTR MaLR 0 593 17 1821 129 25 114 chr3 175814088 175814604 -42222554 + MER4A LTR ERV1 1 308 -157 22 0 0 0 chr3 175814796 175814818 -42222340 + AT_rich Low_complexity Low_complexity 1 22 0 261 200 0 0 chr3 175814874 175814924 -42222234 + T-rich Low_complexity Low_complexity 1 50 0 237 272 17 17 chr3 175815119 175815225 -42221933 + CT-rich Low_complexity Low_complexity 1 106 0 207 203 324 0 chr3 175815622 175815696 -42221462 + MER91C DNA MER1_type 22 119 -21 2104 102 0 16 chr3 175815778 175816083 -42221075 + AluY SINE Alu 1 300 -11 613 232 162 15 chr3 175816087 175816285 -42220873 + L2 LINE L2 360 586 -2728 609 213 94 70 chr3 175816377 175816692 -42220466 - L1MC5 LINE L1 -236 7649 7343 1495 174 58 18 chr3 175816692 175817005 -42220153 - AluJb SINE Alu 0 324 1 609 213 94 70 chr3 175817005 175817801 -42219357 - L1MC5 LINE L1 -542 7343 6650 1394 206 73 14 chr3 175818059 175818161 -42218997 - L1MC5 LINE L1 -1818 5990 5895 2160 101 10 3 chr3 175818161 175818449 -42218709 - AluY SINE Alu -20 291 2 1394 206 73 14 chr3 175818449 175818701 -42218457 - L1MC5 LINE L1 -1913 5895 5615 2020 163 52 0 chr3 175818758 175819101 -42218057 - MLT1A1 LTR MaLR -4 361 1 180 314 47 52 chr3 175819794 175819966 -42217192 - L3 LINE CR1 -619 958 788 1564 206 0 3 chr3 175820410 175820696 -42216462 + AluJo SINE Alu 1 285 -27 370 225 175 0 chr3 175820701 175820781 -42216377 + MER63 DNA MER1_type 966 1059 -2 504 257 40 0 chr3 175820920 175821021 -42216137 + L2 LINE L2 3168 3272 0 26 30 0 0 chr3 175822058 175822091 -42215067 + AT_rich Low_complexity Low_complexity 1 33 0 347 272 74 80 chr3 175823051 175823127 -42214031 - MIR SINE MIR -100 162 87 2523 66 0 0 chr3 175823127 175823430 -42213728 + AluY SINE Alu 4 306 -5 347 272 74 80 chr3 175823430 175823515 -42213643 - MIR SINE MIR -175 87 2 213 259 111 0 chr3 175823539 175823593 -42213565 - MIR SINE MIR -155 107 48 190 240 240 0 chr3 175823623 175823673 -42213485 - L2 LINE L2 -11 3302 3241 485 199 157 12 chr3 175824112 175824278 -42212880 - Charlie1 DNA MER1_type 0 2761 2572 228 203 219 0 chr3 175824289 175824353 -42212805 - Charlie1 DNA MER1_type -2629 132 55 * 230 232 126 21 chr3 175824352 175824447 -42212711 + MER112 DNA MER1_type 144 248 -12 420 280 79 19 chr3 175825749 175825963 -42211195 + L1ME LINE L1 5512 5738 -383 23 54 0 0 chr3 175827366 175827403 -42209755 + AT_rich Low_complexity Low_complexity 1 37 0 527 257 441 0 chr3 175827551 175827905 -42209253 - L2 LINE L2 0 3313 2804 942 288 158 2 chr3 175827923 175828347 -42208811 - L2 LINE L2 -819 2495 2006 1507 149 43 120 chr3 175828848 175829223 -42207935 + MER7A DNA MER2_type 1 344 -2 23 54 0 0 chr3 175830198 175830235 -42206923 + AT_rich Low_complexity Low_complexity 1 37 0 671 330 139 30 chr3 175830774 175831429 -42205729 - L2 LINE L2 -1049 2265 1540 4150 153 35 38 chr3 175831675 175832249 -42204909 - L1MB1 LINE L1 -1 6167 5594 1695 146 35 14 chr3 175832249 175832536 -42204622 - AluJo SINE Alu -19 293 1 4150 153 35 38 chr3 175832536 175832761 -42204397 - L1MB1 LINE L1 -574 5594 5370 1743 218 115 86 chr3 175833269 175833338 -42203820 - MER21B LTR ERV1 -125 738 672 1880 156 0 7 chr3 175833338 175833639 -42203519 + AluJb SINE Alu 1 299 -13 1743 218 115 86 chr3 175833639 175834275 -42202883 - MER21B LTR ERV1 -191 672 13 1440 155 37 34 chr3 175834508 175834804 -42202354 - MER21B-int LTR ERV1 -47 4144 3848 8161 207 75 27 chr3 175834816 175835124 -42202034 - MER21B-int LTR ERV1 -489 3702 3410 2085 77 8 0 chr3 175835124 175835383 -42201775 + AluSg SINE Alu 42 302 -8 8161 207 75 27 chr3 175835383 175836998 -42200160 - MER21B-int LTR ERV1 -781 3410 1686 1788 87 79 12 chr3 175837007 175837298 -42199860 + AluSq SINE Alu 12 319 0 2140 114 7 3 chr3 175837423 175837721 -42199437 - AluSx SINE Alu 0 312 14 582 198 20 0 chr3 175837739 175837840 -42199318 - MER21B-int LTR ERV1 -2405 1786 1684 1307 230 69 62 chr3 175837988 175838398 -42198760 - MER21B-int LTR ERV1 -2565 1626 1221 5603 102 36 3 chr3 175838398 175839488 -42197670 - L1PA14 LINE L1 -9 6152 5023 2291 71 37 0 chr3 175839498 175839794 -42197364 - AluY SINE Alu -2 309 3 1307 230 69 62 chr3 175839794 175839907 -42197251 - MER21B-int LTR ERV1 -2978 1213 1088 281 216 20 0 chr3 175839913 175839964 -42197194 - MER21B-int LTR ERV1 -3762 429 378 1427 187 0 32 chr3 175840075 175840358 -42196800 - MER21B-int LTR ERV1 -3871 320 47 1173 232 79 50 chr3 175840394 175841025 -42196133 - MER21B LTR ERV1 -132 731 20 195 234 43 21 chr3 175841072 175841119 -42196039 + L2 LINE L2 3210 3257 -15 432 103 0 0 chr3 175841145 175841203 -42195955 + LTR29 LTR ERV1 1 58 -564 * 1538 211 96 28 chr3 175841197 175841665 -42195493 + LTR48B LTR ERV1 145 644 0 23 33 0 0 chr3 175842630 175842660 -42194498 + AT_rich Low_complexity Low_complexity 1 30 0 894 156 0 0 chr3 175842661 175842802 -42194356 - FLAM_C SINE Alu -2 141 1 986 275 102 27 chr3 175842999 175843440 -42193718 - L1MC4a LINE L1 -533 5629 5464 34 55 0 0 chr3 175843621 175843676 -42193482 + AT_rich Low_complexity Low_complexity 1 55 0 248 335 95 19 chr3 175844603 175844761 -42192397 + MIR SINE MIR 7 176 -86 3489 143 18 45 chr3 175845520 175845561 -42191597 - MER50 LTR ERV1 -134 600 559 1903 152 3 10 chr3 175845561 175845863 -42191295 - AluJb SINE Alu -12 300 1 3489 143 18 45 chr3 175845863 175846438 -42190720 - MER50 LTR ERV1 -175 559 1 2610 70 3 0 chr3 175846438 175846767 -42190391 - MER50-int LTR ERV1 -8 7197 6868 609 228 152 0 chr3 175847917 175848062 -42189096 - FRAM SINE Alu -10 166 1 486 302 35 17 chr3 175848869 175849041 -42188117 - MER5B DNA MER1_type -3 175 1 3127 155 31 51 chr3 175849206 175849819 -42187339 - LTR9 LTR ERV1 -11 601 1 27 0 0 0 chr3 175850074 175850101 -42187057 + AT_rich Low_complexity Low_complexity 1 27 0 613 313 209 9 chr3 175850726 175851167 -42185991 - L2 LINE L2 -809 2505 1977 1499 117 0 19 chr3 175851690 175851903 -42185255 + AluSg SINE Alu 2 210 -100 248 125 0 21 chr3 175851904 175851952 -42185206 + AluSg SINE Alu 249 295 -6 24 67 0 0 chr3 175852022 175852067 -42185091 + AT_rich Low_complexity Low_complexity 1 45 0 413 281 62 38 chr3 175852671 175852831 -42184327 - MIR SINE MIR -12 250 87 1896 108 74 0 chr3 175852932 175853201 -42183957 - AluSx SINE Alu -23 289 1 330 303 26 113 chr3 175853489 175853684 -42183474 + L2 LINE L2 315 492 -2822 460 322 170 39 chr3 175854083 175854543 -42182615 + L2 LINE L2 2210 2729 -585 679 123 25 66 chr3 175854790 175854912 -42182246 + MER2 DNA MER2_type 3 119 -226 323 340 57 25 chr3 175855064 175855308 -42181850 - L2 LINE L2 -995 2319 2068 1828 201 109 60 chr3 175855339 175856061 -42181097 - L1MC5 LINE L1 -44 7917 7160 24 0 0 0 chr3 175856763 175856787 -42180371 + AT_rich Low_complexity Low_complexity 1 24 0 2098 134 0 0 chr3 175857558 175857849 -42179309 + AluSx SINE Alu 1 291 -21 22 35 0 0 chr3 175858321 175858350 -42178808 + AT_rich Low_complexity Low_complexity 1 29 0 2243 107 20 0 chr3 175858614 175858912 -42178246 - AluSx SINE Alu -8 304 1 212 318 114 23 chr3 175859119 175859207 -42177951 - L2 LINE L2 -218 3054 2959 865 154 0 0 chr3 175859996 175860126 -42177032 + FLAM_A SINE Alu 4 133 0 216 292 183 25 chr3 175860372 175860492 -42176666 - L2 LINE L2 0 3272 3134 1931 165 13 13 chr3 175861178 175861487 -42175671 + AluJb SINE Alu 4 312 0 226 240 0 20 chr3 175861487 175861537 -42175621 + GA-rich Low_complexity Low_complexity 2 50 0 21 0 0 0 chr3 175862350 175862371 -42174787 + AT_rich Low_complexity Low_complexity 1 21 0 442 311 53 111 chr3 175862633 175863012 -42174146 - L2 LINE L2 -1 3271 2915 1588 172 0 57 chr3 175863124 175863440 -42173718 + AluJb SINE Alu 6 304 0 1697 189 10 7 chr3 175863450 175863746 -42173412 + AluJb SINE Alu 1 297 -15 895 150 0 0 chr3 175863757 175863884 -42173274 + FLAM_C SINE Alu 1 127 -16 2176 105 16 0 chr3 175863888 175864192 -42172966 + AluY SINE Alu 1 309 -2 349 308 154 64 chr3 175864429 175864988 -42172170 - L2 LINE L2 -548 2766 2158 549 241 161 63 chr3 175865013 175865234 -42171924 + MER34B LTR ERV1 5 203 -362 1316 178 140 19 chr3 175865234 175865498 -42171660 + AluJb SINE Alu 1 296 -6 549 241 161 63 chr3 175865498 175865802 -42171356 + MER34B LTR ERV1 203 565 0 518 245 163 66 chr3 175865937 175866040 -42171118 + L2 LINE L2 2911 3003 -310 1616 172 0 8 chr3 175866040 175866301 -42170857 - AluJb SINE Alu -13 299 41 518 245 163 66 chr3 175866301 175866560 -42170598 + L2 LINE L2 3003 3308 -5 331 337 179 14 chr3 175866745 175867030 -42170128 - L2 LINE L2 -1650 1664 1333 1632 189 0 39 chr3 175868732 175869044 -42168114 - AluJb SINE Alu -12 300 1 2682 109 48 16 chr3 175869792 175870276 -42166882 + L1MB4 LINE L1 5682 6180 0 271 0 111 0 chr3 175870796 175870841 -42166317 + L1MB4 LINE L1 6128 6177 -3 1567 234 54 101 chr3 175870881 175870973 -42166185 - MER21B LTR ERV1 -137 726 631 1973 119 0 27 chr3 175870973 175871293 -42165865 - AluSx SINE Alu 0 312 1 1567 234 54 101 chr3 175871293 175871920 -42165238 - MER21B LTR ERV1 -232 631 40 4266 217 65 48 chr3 175872033 175872649 -42164509 - MER4B-int LTR ERV1 -1131 3060 2456 1765 141 78 0 chr3 175872649 175872919 -42164239 + AluJb SINE Alu 3 293 -19 4266 217 65 48 chr3 175872919 175873558 -42163600 - MER4B-int LTR ERV1 -1735 2456 1783 1112 144 46 0 chr3 175873558 175873753 -42163405 - LTR24 LTR ERV1 0 467 264 801 154 0 15 chr3 175873756 175873886 -42163272 + FLAM_C SINE Alu 16 143 0 4566 216 35 38 chr3 175873894 175874979 -42162179 - MER4B-int LTR ERV1 -2416 4342 3260 4324 67 18 22 chr3 175874979 175875577 -42161581 + MER4A LTR ERV1 1 596 -4 4566 216 35 38 chr3 175875577 175875753 -42161405 - MER4B-int LTR ERV1 -3498 3260 3085 469 259 121 42 chr3 175877712 175877951 -42159207 - L2 LINE L2 0 3313 3056 773 134 65 85 chr3 175877957 175878093 -42159065 + L1PB3 LINE L1 5949 6086 -68 2116 83 18 7 chr3 175878093 175878371 -42158787 + AluSx SINE Alu 2 282 -30 237 60 20 40 chr3 175878374 175878424 -42158734 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 773 134 65 85 chr3 175878424 175878484 -42158674 + L1PB3 LINE L1 6088 6145 -9 22 0 0 0 chr3 175878484 175878506 -42158652 + AT_rich Low_complexity Low_complexity 1 22 0 205 146 21 21 chr3 175878523 175878571 -42158587 + (TAA)n Simple_repeat Simple_repeat 1 48 0 219 258 15 15 chr3 175878576 175878642 -42158516 - L2 LINE L2 -247 3066 3001 980 189 74 79 chr3 175878792 175878875 -42158283 + HAL1 LINE L1 2102 2184 -323 763 187 65 108 chr3 175878875 175879228 -42157930 - MER46C DNA MER2_type 0 338 1 980 189 74 79 chr3 175879228 175879551 -42157607 + HAL1 LINE L1 2184 2506 -1 3815 185 51 11 chr3 175879571 175880457 -42156701 + L1MD2 LINE L1 5215 6138 -221 28 0 0 0 chr3 175880803 175880831 -42156327 + AT_rich Low_complexity Low_complexity 1 28 0 1717 170 24 50 chr3 175880831 175881255 -42155903 - L1MB8 LINE L1 -111 6067 5655 1028 97 0 32 chr3 175881280 175881466 -42155692 + (TA)n Simple_repeat Simple_repeat 1 180 0 78 102 0 0 chr3 175881470 175881656 -42155502 + AT_rich Low_complexity Low_complexity 1 186 0 267 104 0 0 chr3 175881808 175881856 -42155302 + (G)n Simple_repeat Simple_repeat 1 48 0 219 435 0 0 chr3 175881946 175882038 -42155120 + G-rich Low_complexity Low_complexity 1 92 0 3058 134 33 5 chr3 175882409 175883157 -42154001 - L1P5 LINE L1 -392 6475 5708 1601 98 2 239 chr3 175883160 175883611 -42153547 + LTR14B LTR ERVK 1 608 0 11991 182 32 9 chr3 175883611 175885026 -42152132 - L1P5 LINE L1 -1149 5713 4331 2283 112 0 0 chr3 175885026 175885330 -42151828 - AluSx SINE Alu -8 304 1 11991 182 32 9 chr3 175885330 175887628 -42149530 - L1P5 LINE L1 -2531 4331 1910 1758 185 150 23 chr3 175887628 175888114 -42149044 + LTR10A LTR ERV1 1 548 -61 3791 109 29 23 chr3 175888114 175888773 -42148385 - L1PBa LINE L1 -4942 1921 1267 2183 86 0 28 chr3 175888773 175889094 -42148064 + AluY SINE Alu 1 313 0 3791 109 29 23 chr3 175889094 175889619 -42147539 - L1PBa LINE L1 -5596 1267 582 316 164 74 123 chr3 175890048 175890170 -42146988 - MIR SINE MIR -142 120 5 1797 181 16 0 chr3 175890175 175890479 -42146679 - AluJo SINE Alu -3 309 1 1870 135 14 37 chr3 175890975 175891271 -42145887 + AluJb SINE Alu 18 306 -6 180 0 0 0 chr3 175891271 175891291 -42145867 + (TA)n Simple_repeat Simple_repeat 2 21 0 985 263 29 0 chr3 175891327 175891570 -42145588 + MIR SINE MIR 13 262 0 620 162 9 0 chr3 175892659 175892764 -42144394 + FLAM_C SINE Alu 1 106 -37 387 0 0 0 chr3 175892764 175892807 -42144351 + (CA)n Simple_repeat Simple_repeat 2 44 0 1152 94 6 17 chr3 175892814 175892994 -42144164 + L1MA5A LINE L1 6120 6297 0 186 273 0 0 chr3 175893006 175893061 -42144097 + L2 LINE L2 3258 3312 -1 1783 154 10 30 chr3 175893124 175893429 -42143729 - AluSx SINE Alu -13 299 1 2002 141 10 0 chr3 175893707 175893997 -42143161 + AluSx SINE Alu 1 293 -19 2770 145 63 12 chr3 175894145 175894650 -42142508 + LTR26B LTR ERV1 1 531 0 1970 140 39 0 chr3 175895078 175895364 -42141794 - AluSx SINE Alu -15 297 1 2271 111 0 0 chr3 175895513 175895811 -42141347 + AluSx SINE Alu 2 299 -13 1629 174 11 4 chr3 175897318 175897588 -42139570 + AluJb SINE Alu 1 272 -40 252 0 0 0 chr3 175897602 175897630 -42139528 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 270 0 0 0 chr3 175898524 175898554 -42138604 + (CA)n Simple_repeat Simple_repeat 2 31 0 1098 199 102 34 chr3 175898556 175898878 -42138280 + MER2 DNA MER2_type 1 344 0 2082 139 0 3 chr3 175899132 175899435 -42137723 + AluJb SINE Alu 1 302 -10 22 0 0 0 chr3 175900305 175900327 -42136831 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr3 175900740 175900765 -42136393 + AT_rich Low_complexity Low_complexity 1 25 0 355 297 93 88 chr3 175902335 175902810 -42134348 + L1M2 LINE L1 476 952 -5897 * 378 310 223 35 chr3 175902385 175903098 -42134060 - L1M2 LINE L1 -5466 1383 537 * 383 254 108 111 chr3 175902949 175903292 -42133866 + L1M2 LINE L1 657 998 -5851 2125 128 20 3 chr3 175904987 175905292 -42131866 - AluSx SINE Alu -2 310 1 386 262 76 48 chr3 175906952 175907097 -42130061 - L2 LINE L2 -2 3311 3163 257 326 114 40 chr3 175907818 175907993 -42129165 - MIR SINE MIR -43 219 32 825 141 0 16 chr3 175909434 175909562 -42127596 - FLAM_C SINE Alu -6 127 2 1696 162 20 20 chr3 175910352 175910649 -42126509 - AluJb SINE Alu -15 297 1 494 239 311 35 chr3 175910697 175911102 -42126056 + LTR33A LTR ERVL 7 523 0 554 269 99 0 chr3 175911284 175911455 -42125703 + MIR SINE MIR 75 262 0 1749 192 14 17 chr3 175912166 175912515 -42124643 + MER7A DNA MER2_type 1 346 0 360 233 113 75 chr3 175912675 175912737 -42124421 + MER103 DNA DNA 2 60 -106 2285 108 0 0 chr3 175912737 175913034 -42124124 + AluSx SINE Alu 1 297 -15 360 233 113 75 chr3 175913034 175913064 -42124094 + MER103 DNA DNA 60 87 -79 1143 219 88 43 chr3 175913064 175913392 -42123766 - MER2 DNA MER2_type 0 344 2 360 233 113 75 chr3 175913392 175913457 -42123701 + MER103 DNA DNA 87 166 0 273 57 0 0 chr3 175913990 175914025 -42123133 + (TA)n Simple_repeat Simple_repeat 2 36 0 751 259 100 9 chr3 175914421 175914641 -42122517 + MIR SINE MIR 9 248 -14 1657 140 7 88 chr3 175914760 175915067 -42122091 + AluJo SINE Alu 1 282 -30 226 315 112 0 chr3 175915273 175915362 -42121796 - MIR SINE MIR -78 130 32 1193 239 157 41 chr3 175916431 175916921 -42120237 + MLT1G1 LTR MaLR 37 583 -12 661 240 132 119 chr3 175917533 175917988 -42119170 - MLT1J LTR MaLR -5 506 46 1137 256 122 20 chr3 175918820 175919223 -42117935 - MLT1J2 LTR MaLR -4 446 3 181 318 16 16 chr3 175919263 175919326 -42117832 - MIR3 SINE MIR -8 200 138 982 187 33 0 chr3 175919627 175919809 -42117349 + MER5A DNA MER1_type 2 189 0 210 37 0 0 chr3 175919833 175919860 -42117298 + (TA)n Simple_repeat Simple_repeat 2 28 0 184 211 0 0 chr3 175920624 175920662 -42116496 + MIR3 SINE MIR 151 188 -20 2004 149 107 42 chr3 175923447 175923487 -42113671 - MSTA LTR MaLR 0 428 392 1594 135 0 83 chr3 175923487 175923776 -42113382 + AluSx SINE Alu 48 312 0 2004 149 107 42 chr3 175923776 175924036 -42113122 - MSTA LTR MaLR -36 392 93 2199 138 30 30 chr3 175924036 175924399 -42112759 + THE1B LTR MaLR 2 364 0 2004 149 107 42 chr3 175924399 175924499 -42112659 - MSTA LTR MaLR -335 93 1 218 337 56 0 chr3 175924724 175924813 -42112345 + L2 LINE L2 1322 1415 -1899 2138 125 0 0 chr3 175924966 175925255 -42111903 - AluSg SINE Alu -21 289 1 267 297 0 14 chr3 175925544 175925618 -42111540 - L2 LINE L2 -5 3267 3195 222 115 58 0 chr3 175925666 175925718 -42111440 + GA-rich Low_complexity Low_complexity 3 57 0 730 152 0 0 chr3 175925850 175925962 -42111196 + AluJb SINE Alu 193 304 -8 2347 109 0 0 chr3 175926241 175926544 -42110614 - AluSx SINE Alu -9 303 1 620 283 48 78 chr3 175926667 175927080 -42110078 - MLT1J LTR MaLR 0 511 111 443 206 59 82 chr3 175927197 175927311 -42109847 + MER5B DNA MER1_type 1 111 -67 1554 201 14 3 chr3 175927311 175927600 -42109558 - AluJo SINE Alu -17 295 4 443 206 59 82 chr3 175927600 175927655 -42109503 + MER5B DNA MER1_type 111 166 -12 211 250 12 75 chr3 175928330 175928410 -42108748 - MIR SINE MIR -81 127 53 2148 124 32 45 chr3 175928456 175928836 -42108322 + THE1C LTR MaLR 1 375 0 1831 180 3 0 chr3 175928845 175929139 -42108019 - AluJo SINE Alu -17 295 1 230 229 0 0 chr3 175930210 175930258 -42106900 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 1462 256 177 41 chr3 175930287 175930897 -42106261 - MER115 DNA AcHobo 0 693 1 1812 139 54 10 chr3 175930980 175931275 -42105883 + AluJb SINE Alu 5 312 0 185 279 0 0 chr3 175931360 175931403 -42105755 - L2 LINE L2 -222 3050 3008 428 240 98 82 chr3 175932460 175932613 -42104545 - MIR SINE MIR -72 190 32 3818 125 2 5 chr3 175932613 175933183 -42103975 - L1PA13 LINE L1 0 6163 5596 428 240 98 82 chr3 175933183 175933212 -42103946 - MIR SINE MIR -230 32 5 369 227 117 8 chr3 175933257 175933385 -42103773 - MIR SINE MIR -51 211 70 373 283 9 19 chr3 175933413 175933519 -42103639 - MIR SINE MIR -72 136 32 207 156 0 0 chr3 175934039 175934071 -42103087 + (ATG)n Simple_repeat Simple_repeat 1 32 0 887 168 84 10 chr3 175934286 175934489 -42102669 + L1ME3 LINE L1 4881 5098 -1048 2729 179 8 50 chr3 175935450 175936048 -42101110 + L1ME3 LINE L1 5589 6161 -1 262 291 123 11 chr3 175936517 175936696 -42100462 - MIR SINE MIR -58 204 6 620 137 128 0 chr3 175936939 175937056 -42100102 - L1MA6 LINE L1 0 6300 6169 1932 163 27 38 chr3 175937469 175937838 -42099320 - MLT1A1 LTR MaLR 0 365 1 2265 118 3 0 chr3 175938184 175938490 -42098668 - AluSx SINE Alu -5 307 1 1217 256 122 0 chr3 175939005 175939341 -42097817 - MLT1G LTR MaLR -12 578 202 1097 169 0 11 chr3 175939827 175940004 -42097154 - FAM SINE Alu 0 175 1 1197 168 10 5 chr3 175940320 175940528 -42096630 - MER3 DNA MER1_type 0 209 1 284 241 0 0 chr3 175940634 175940688 -42096470 - MARNA DNA Mariner -238 348 295 542 248 25 38 chr3 175940803 175940960 -42096198 - MARNA DNA Mariner -353 233 79 347 248 116 0 chr3 175940960 175941081 -42096077 + MIR3 SINE MIR 73 207 -1 634 268 13 0 chr3 175941159 175941316 -42095842 + MER117 DNA MER1_type 1 159 -38 271 278 88 31 chr3 175941460 175941654 -42095504 + MLT1J LTR MaLR 288 492 -19 459 282 55 39 chr3 175941873 175942054 -42095104 + MIR3 SINE MIR 13 196 -12 22 0 0 0 chr3 175944625 175944647 -42092511 + AT_rich Low_complexity Low_complexity 1 22 0 1755 175 18 0 chr3 175945758 175946044 -42091114 - AluJo SINE Alu -21 291 1 23 0 0 0 chr3 175946062 175946085 -42091073 + AT_rich Low_complexity Low_complexity 1 23 0 328 235 352 0 chr3 175946459 175946655 -42090503 - L1MC4a LINE L1 -1884 5924 5660 588 287 110 20 chr3 175948222 175948678 -42088480 - L1ME4a LINE L1 -1 6120 5624 1185 201 127 16 chr3 175948787 175949110 -42088048 + MSTD LTR MaLR 38 396 0 351 0 0 0 chr3 175949171 175949210 -42087948 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 7237 52 14 47 chr3 175949210 175950518 -42086640 - SVA Other Other -839 1367 220 1113 153 40 5 chr3 175950595 175950797 -42086361 - MER6B DNA MER2_type -1 209 1 371 233 107 27 chr3 175951016 175951166 -42085992 + L2 LINE L2 2115 2276 -1038 1646 179 53 12 chr3 175951168 175951487 -42085671 + L1MC4 LINE L1 6742 7073 -969 1197 201 29 0 chr3 175951497 175951701 -42085457 - MER58A DNA MER1_type -14 210 1 700 218 17 6 chr3 175951707 175951881 -42085277 + L1MC4 LINE L1 7068 7243 -799 287 143 0 0 chr3 175951886 175951928 -42085230 + AluSc SINE Alu 224 265 -34 653 214 24 0 chr3 175952054 175952180 -42084978 + MER45A DNA AcHobo 1 129 -49 280 286 29 0 chr3 175952225 175952294 -42084864 + LTR67 LTR ERVL 408 478 -79 1623 196 2 90 chr3 175952294 175952632 -42084526 + MER63B DNA MER1_type 1 367 -695 2081 141 0 7 chr3 175952632 175952936 -42084222 - AluSx SINE Alu -10 302 1 1623 196 2 90 chr3 175952936 175952959 -42084199 + MER63B DNA MER1_type 367 325 -737 2552 69 0 0 chr3 175952959 175953262 -42083896 - AluY SINE Alu -8 303 1 1623 196 2 90 chr3 175953262 175953312 -42083846 + MER63B DNA MER1_type 324 377 -59 255 188 58 36 chr3 175953413 175953551 -42083607 + (CGCGG)n Simple_repeat Simple_repeat 1 141 0 28 99 0 0 chr3 175953553 175953644 -42083514 + GC_rich Low_complexity Low_complexity 1 91 0 261 209 7 65 chr3 175953719 175953858 -42083300 + G-rich Low_complexity Low_complexity 4 134 0 382 78 86 0 chr3 175954100 175954228 -42082930 + (TA)n Simple_repeat Simple_repeat 2 140 0 2317 90 3 7 chr3 175954720 175955019 -42082139 - AluSg SINE Alu -12 298 1 909 174 6 29 chr3 175955973 175956145 -42081013 - MER4C LTR ERV1 -3 462 295 2078 130 3 0 chr3 176006209 176006527 -42030631 + AluSc SINE Alu 1 309 0 195 42 0 0 chr3 176008282 176008306 -42028852 + (CTGGGG)n Simple_repeat Simple_repeat 6 29 0 1180 181 4 0 chr3 176009968 176010191 -42026967 + AluSg/x SINE Alu 79 300 -12 1976 112 35 0 chr3 176010242 176010528 -42026630 + AluSq SINE Alu 1 296 -17 9071 43 3 2 chr3 176012339 176013406 -42023752 + MER11C LTR ERVK 4 1071 0 241 200 0 0 chr3 176016321 176016366 -42020792 + MER44D DNA MER2_type 2 46 -659 * 1049 195 52 41 chr3 176016363 176016468 -42020690 + MER44D DNA MER2_type 157 259 -2228 1303 219 3 52 chr3 176016468 176016616 -42020542 + AluJb SINE Alu 1 128 -174 1909 99 3 67 chr3 176016616 176016930 -42020228 + AluSg SINE Alu 1 294 -16 1303 219 3 52 chr3 176016930 176017091 -42020067 + AluJb SINE Alu 128 295 -7 1049 195 52 41 chr3 176017091 176017308 -42019850 + MER44D DNA MER2_type 259 604 -1 231 229 0 33 chr3 176017980 176018041 -42019117 - MER2 DNA MER2_type -19 326 268 2210 100 7 7 chr3 176018858 176019167 -42017991 - AluSq SINE Alu -4 309 1 234 313 130 15 chr3 176019704 176019835 -42017323 + L2 LINE L2 3081 3226 -87 550 268 36 71 chr3 176019914 176020138 -42017020 - MER58A DNA MER1_type -3 221 6 399 275 83 83 chr3 176020559 176020873 -42016285 + L1 LINE L1 4249 4565 -1581 2209 99 3 0 chr3 176020936 176021239 -42015919 + AluSx SINE Alu 1 304 -8 316 310 163 34 chr3 176021239 176021478 -42015680 + L1MDb LINE L1 938 1207 -5202 1874 166 119 19 chr3 176021482 176021773 -42015385 - MER6A DNA MER2_type -260 605 344 1974 129 0 0 chr3 176021773 176022059 -42015099 + AluSx SINE Alu 1 286 -26 395 19 19 0 chr3 176022059 176022111 -42015047 + (CATAA)n Simple_repeat Simple_repeat 2 54 0 1277 0 26 32 chr3 176022111 176022354 -42014804 + (TAAAA)n Simple_repeat Simple_repeat 1 241 0 1874 166 119 19 chr3 176022354 176022468 -42014690 - MER6A DNA MER2_type -520 345 155 1271 151 0 0 chr3 176022930 176023136 -42014022 + AluSq SINE Alu 105 310 -3 1258 138 8 84 chr3 176023136 176023397 -42013761 + AluSq SINE Alu 1 241 -72 8690 118 132 23 chr3 176023400 176024904 -42012254 - pTR5 LTR ERV1 0 2438 771 396 155 36 9 chr3 176024904 176024996 -42012162 + Alu SINE Alu 238 291 -10 862 154 0 0 chr3 176024996 176025126 -42012032 - AluJo/FLAM SINE Alu -172 130 1 1828 249 43 0 chr3 176025362 176025804 -42011354 + LOR1b LTR ERV1 1 461 0 187 250 89 0 chr3 176025962 176026018 -42011140 + L2 LINE L2 3209 3269 -3 2104 130 0 0 chr3 176026129 176026430 -42010728 + AluSq SINE Alu 1 301 -12 3571 247 25 78 chr3 176026647 176027875 -42009283 - MER4B-int LTR ERV1 -1014 3177 2015 942 194 9 33 chr3 176027994 176028205 -42008953 + MER2 DNA MER2_type 1 206 -139 321 89 0 0 chr3 176028256 176028301 -42008857 + (TG)n Simple_repeat Simple_repeat 2 46 0 1520 161 0 74 chr3 176028322 176028620 -42008538 - AluJb SINE Alu -28 284 9 2178 96 7 0 chr3 176028696 176028998 -42008160 + AluSq SINE Alu 1 304 -9 876 185 0 17 chr3 176029657 176029835 -42007323 - AluSg/x SINE Alu -2 308 134 2077 116 3 3 chr3 176029837 176030138 -42007020 - AluSx SINE Alu -11 301 1 872 255 20 5 chr3 176030330 176030530 -42006628 - MER4B-int LTR ERV1 -2316 1875 1673 1317 260 26 67 chr3 176030659 176030816 -42006342 - MER4B-int LTR ERV1 -2308 4450 4288 2110 116 0 0 chr3 176030816 176031118 -42006040 - AluSg SINE Alu -8 302 1 1317 260 26 67 chr3 176031118 176031308 -42005850 - MER4B-int LTR ERV1 -2470 4288 4092 2202 94 3 10 chr3 176031308 176031606 -42005552 - AluSx SINE Alu -16 296 1 1317 260 26 67 chr3 176031606 176031837 -42005321 - MER4B-int LTR ERV1 -2666 4092 1219 1700 218 21 68 chr3 176031905 176032377 -42004781 + MER41B LTR ERV1 157 606 -29 2381 263 42 28 chr3 176032423 176033064 -42004094 - MER4B-int LTR ERV1 -2797 3961 3306 1949 113 7 23 chr3 176033064 176033365 -42003793 + AluSx SINE Alu 1 296 -16 2381 263 42 28 chr3 176033365 176033479 -42003679 - MER4B-int LTR ERV1 -3452 3306 3195 495 267 28 31 chr3 176033481 176033665 -42003493 - MIR SINE MIR -61 147 6 1366 176 35 17 chr3 176033704 176033993 -42003165 + AluJo SINE Alu 15 308 -4 381 154 15 0 chr3 176034215 176034280 -42002878 - MER5B DNA MER1_type 0 178 113 2388 82 0 0 chr3 176034284 176034590 -42002568 + AluSg SINE Alu 1 306 -4 793 159 61 0 chr3 176034598 176034730 -42002428 + AluJb SINE Alu 140 279 -33 187 231 26 0 chr3 176034752 176034791 -42002367 - MER5B DNA MER1_type -59 119 80 821 261 102 35 chr3 176034795 176035197 -42001961 + MLT1C LTR MaLR 1 429 -38 23 0 0 0 chr3 176035304 176035327 -42001831 + AT_rich Low_complexity Low_complexity 1 23 0 709 202 8 0 chr3 176036053 176036182 -42000976 + FLAM_A SINE Alu 1 130 -3 303 203 0 31 chr3 176036280 176036344 -42000814 - MER5B DNA MER1_type 0 178 117 2068 113 0 3 chr3 176036346 176036647 -42000511 + AluSx SINE Alu 1 300 -12 1404 196 13 27 chr3 176036659 176036960 -42000198 + AluJb SINE Alu 1 297 -15 722 233 68 75 chr3 176036997 176037263 -41999895 - MLT1C LTR MaLR 0 467 204 309 286 18 54 chr3 176037363 176037475 -41999683 + LTR67 LTR ERVL 376 483 -74 180 158 53 0 chr3 176037546 176037584 -41999574 - MER5A DNA MER1_type -84 105 66 1728 129 4 25 chr3 176037584 176037864 -41999294 - AluSx SINE Alu -1 311 38 11768 85 18 16 chr3 176038114 176039756 -41997402 - L1P LINE L1 -1725 4421 2780 4538 135 10 22 chr3 176039756 176041042 -41996116 - L1MA2 LINE L1 -475 7248 4145 * 15328 163 87 19 chr3 176041039 176041480 -41995678 - L1MA2 LINE L1 -4489 3076 2667 1839 91 20 0 chr3 176041480 176041732 -41995426 + AluSx SINE Alu 48 304 -8 2289 89 0 0 chr3 176041732 176042034 -41995124 + AluY SINE Alu 1 303 -8 15328 163 87 19 chr3 176042034 176044457 -41992701 - L1MA2 LINE L1 -4897 2668 14 3108 177 21 3 chr3 176044595 176045160 -41991998 - L1MC3 LINE L1 0 7785 7211 270 277 108 0 chr3 176045546 176045629 -41991529 + MIR3 SINE MIR 110 201 -7 2100 102 41 0 chr3 176047233 176047528 -41989630 + AluSx SINE Alu 1 307 -5 1583 182 14 17 chr3 176047908 176048205 -41988953 - AluJo SINE Alu -16 296 1 279 310 139 13 chr3 176048327 176048485 -41988673 - MER5B DNA MER1_type 0 178 1 2073 80 10 26 chr3 176048728 176049039 -41988119 + AluY SINE Alu 1 306 -5 192 40 0 0 chr3 176049075 176049100 -41988058 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 301 182 45 15 chr3 176049650 176049716 -41987442 + MER5A DNA MER1_type 11 78 -111 301 170 0 0 chr3 176049738 176049785 -41987373 + AluSp/q SINE Alu 216 262 -41 1626 124 8 0 chr3 176049799 176050048 -41987110 + AluSx SINE Alu 16 266 -46 2044 135 0 0 chr3 176052920 176053217 -41983941 + AluSx SINE Alu 1 297 -15 211 191 0 24 chr3 176055181 176055223 -41981935 + (CTGGGG)n Simple_repeat Simple_repeat 1 41 0 1144 200 0 0 chr3 176056747 176056967 -41980191 + AluSg/x SINE Alu 77 296 -14 1599 169 22 25 chr3 176057018 176057332 -41979826 + AluSq SINE Alu 1 313 0 899 122 7 7 chr3 176059320 176059459 -41977699 - AluSq/x SINE Alu -162 150 12 1059 125 0 0 chr3 176059755 176059923 -41977235 + (TAGA)n Simple_repeat Simple_repeat 3 170 0 7299 128 35 13 chr3 176059925 176060378 -41976780 - Tigger3b DNA MER2_type -1797 1231 789 2225 119 0 0 chr3 176060378 176060672 -41976486 - AluSx SINE Alu -18 294 1 7299 128 35 13 chr3 176060672 176061147 -41976011 - Tigger3b DNA MER2_type -2239 789 269 2469 143 43 24 chr3 176061147 176061373 -41975785 - MSTA LTR MaLR 0 428 189 1752 92 0 0 chr3 176061373 176061590 -41975568 - AluSg/x SINE Alu -11 299 83 2469 143 43 24 chr3 176061590 176061783 -41975375 - MSTA LTR MaLR -239 189 1 7299 128 35 13 chr3 176061783 176062055 -41975103 - Tigger3b DNA MER2_type -2759 269 4 2134 147 26 18 chr3 176062069 176062476 -41974682 - MLT2B3 LTR ERVL -61 454 1 1085 103 0 6 chr3 176062693 176062849 -41974309 + LOR1b LTR ERV1 1 155 -306 1803 164 54 22 chr3 176062850 176063348 -41973810 + MER51A LTR ERV1 1 640 0 * 1950 145 94 0 chr3 176063348 176063663 -41973495 + LOR1a LTR ERV1 153 497 0 218 323 89 8 chr3 176063668 176063792 -41973366 - MIR SINE MIR -122 140 7 2442 193 18 42 chr3 176063957 176064264 -41972894 - MER90 LTR ERV1 0 614 324 1679 186 14 10 chr3 176064264 176064554 -41972604 + AluJo SINE Alu 1 291 -21 2442 193 18 42 chr3 176064554 176064800 -41972358 - MER90 LTR ERV1 -290 324 74 543 250 65 6 chr3 176065246 176065414 -41971744 - MER5B DNA MER1_type 0 178 1 182 36 0 36 chr3 176065452 176065480 -41971678 + (TGGGGG)n Simple_repeat Simple_repeat 2 28 0 438 125 7 184 chr3 176065720 176065856 -41971302 - MLT1A1 LTR MaLR 0 365 254 392 211 138 0 chr3 176065938 176066047 -41971111 - MLT1A1 LTR MaLR -304 124 1 216 0 0 0 chr3 176066604 176066628 -41970530 + (A)n Simple_repeat Simple_repeat 1 24 0 2229 90 35 0 chr3 176067433 176067722 -41969436 + AluSx SINE Alu 1 299 -13 560 224 83 26 chr3 176068008 176068164 -41968994 + FRAM SINE Alu 11 175 -1 936 103 7 15 chr3 176069551 176069687 -41967471 - AluSg/x SINE Alu -15 295 161 1137 123 12 0 chr3 176069803 176069965 -41967193 - AluSq SINE Alu -147 166 3 1930 231 24 113 chr3 176069988 176070703 -41966455 - MER21-int LTR ERV1 -1555 2636 1986 1960 113 3 92 chr3 176070727 176071054 -41966104 - AluSq SINE Alu -15 298 1 1699 193 0 0 chr3 176071225 176071510 -41965648 - AluJb SINE Alu -11 301 17 232 254 0 0 chr3 176071512 176071575 -41965583 - MIR SINE MIR -119 143 81 415 312 53 29 chr3 176071591 176071761 -41965397 + MLT1J LTR MaLR 4 177 -334 196 382 0 11 chr3 176072006 176072095 -41965063 + MIR SINE MIR 27 114 -148 200 293 0 61 chr3 176073898 176073997 -41963161 + CT-rich Low_complexity Low_complexity 2 94 0 985 147 0 0 chr3 176074365 176074515 -41962643 + AluSg/x SINE Alu 154 303 -7 1542 187 33 30 chr3 176074657 176074957 -41962201 - AluJb SINE Alu -11 301 1 2129 114 21 0 chr3 176075081 176075370 -41961788 - AluSg SINE Alu -14 296 2 2173 89 6 45 chr3 176075379 176075692 -41961466 - AluSq SINE Alu -12 301 1 2019 155 0 0 chr3 176075692 176076002 -41961156 - AluSq SINE Alu -3 310 1 1848 141 7 17 chr3 176076041 176076352 -41960806 - AluSx SINE Alu 0 308 1 1691 169 14 3 chr3 176076844 176077128 -41960030 + AluJb SINE Alu 1 287 -25 2051 141 0 46 chr3 176077775 176078101 -41959057 + AluSx SINE Alu 1 311 -1 188 363 98 0 chr3 176079423 176079525 -41957633 - L2 LINE L2 -3 3269 3158 1997 184 56 99 chr3 176079697 176080214 -41956944 - MER77 LTR ERV1 -49 556 62 4699 241 62 58 chr3 176080445 176081942 -41955216 - MER77-int LTR ERV1 -55 4136 2634 24 77 0 0 chr3 176083495 176083547 -41953611 + AT_rich Low_complexity Low_complexity 1 52 0 219 288 123 0 chr3 176083737 176083810 -41953348 + L2 LINE L2 3160 3241 -31 183 353 69 0 chr3 176083891 176084007 -41953151 - L2 LINE L2 -12 3260 3137 2273 103 3 13 chr3 176084168 176084480 -41952678 - AluSx SINE Alu -3 309 1 819 221 90 27 chr3 176085004 176085226 -41951932 - MER6A DNA MER2_type -369 236 1 302 208 0 0 chr3 176085261 176085314 -41951844 + FLAM SINE Alu 72 124 -9 1954 151 3 3 chr3 176085324 176085628 -41951530 + AluSx SINE Alu 1 304 -8 333 267 29 76 chr3 176085761 176085922 -41951236 + L1ME3 LINE L1 5154 5321 -876 741 136 51 0 chr3 176085922 176086040 -41951118 - FLAM_C SINE Alu -9 124 1 333 267 29 76 chr3 176086040 176086239 -41950919 + L1ME3 LINE L1 5321 5505 -692 278 275 70 23 chr3 176086319 176086490 -41950668 + L1ME3 LINE L1 5611 5789 -373 303 250 12 12 chr3 176086614 176086698 -41950460 + L1ME3 LINE L1 6059 6142 -20 1734 211 44 6 chr3 176087208 176087572 -41949586 + LTR42 LTR ERVL 9 386 -109 207 304 43 0 chr3 176087684 176087753 -41949405 + MIR SINE MIR 179 250 -12 1609 147 38 0 chr3 176088219 176088504 -41948654 + AluJb SINE Alu 9 303 0 199 229 136 86 chr3 176089055 176089195 -41947963 + MIR SINE MIR 90 236 -26 319 232 89 54 chr3 176089653 176089821 -41947337 + LTR67 LTR ERVL 326 499 -58 215 170 43 0 chr3 176089865 176089912 -41947246 - MER5A DNA MER1_type -80 109 61 1037 191 14 47 chr3 176089966 176090181 -41946977 - AluSg/x SINE Alu -15 295 88 1435 66 0 15 chr3 176090311 176090507 -41946651 - L1MA1 LINE L1 -68 6234 6042 2531 71 0 6 chr3 176090535 176090846 -41946312 - AluY SINE Alu -2 309 1 2352 83 0 10 chr3 176090891 176091192 -41945966 - AluSq SINE Alu -15 298 1 993 150 119 48 chr3 176092264 176092527 -41944631 - MER21B LTR ERV1 0 863 613 2164 99 3 38 chr3 176093105 176093418 -41943740 + AluSx SINE Alu 1 302 -10 1591 144 67 32 chr3 176093491 176093775 -41943383 - AluJo SINE Alu -18 294 1 372 217 96 0 chr3 176093819 176093934 -41943224 + MER113 DNA MER1_type? 2 127 -394 2236 102 0 0 chr3 176094286 176094570 -41942588 + AluSc SINE Alu 1 284 -25 2218 109 6 6 chr3 176094658 176094971 -41942187 - AluSp SINE Alu 0 313 1 2211 120 0 0 chr3 176095363 176095662 -41941496 + AluSx SINE Alu 1 299 -13 1788 138 28 14 chr3 176095663 176095968 -41941190 + AluSx SINE Alu 1 309 0 809 144 0 8 chr3 176096433 176096558 -41940600 - FLAM_C SINE Alu -9 124 1 1687 139 28 31 chr3 176096704 176096992 -41940166 - AluJo SINE Alu -24 288 2 762 188 0 8 chr3 176097500 176097633 -41939525 - AluJb SINE Alu -179 133 2 239 354 71 0 chr3 176097634 176097761 -41939397 - MIR SINE MIR -113 149 14 240 244 0 39 chr3 176100127 176100205 -41936953 - L1ME4a LINE L1 -40 6081 6007 960 116 34 0 chr3 176100380 176100527 -41936631 + AluSq SINE Alu 145 296 -17 261 330 0 0 chr3 176100723 176100820 -41936338 - MIR SINE MIR -62 200 104 375 297 8 0 chr3 176100876 176101004 -41936154 - MIR SINE MIR -11 251 123 1445 195 110 51 chr3 176101697 176101744 -41935414 + MSTD LTR MaLR 1 44 -352 2365 94 3 0 chr3 176101744 176102042 -41935116 - AluSx SINE Alu -13 299 1 1445 195 110 51 chr3 176102042 176102368 -41934790 + MSTD LTR MaLR 44 396 0 2136 149 0 32 chr3 176102396 176102744 -41934414 - MER1B DNA MER1_type 0 337 1 23 33 0 0 chr3 176103327 176103357 -41933801 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr3 176103387 176103413 -41933745 + AT_rich Low_complexity Low_complexity 1 26 0 374 243 21 13 chr3 176104413 176104565 -41932593 - MIR SINE MIR -62 146 30 417 39 0 0 chr3 176104654 176104705 -41932453 + (CA)n Simple_repeat Simple_repeat 1 51 0 379 133 200 6 chr3 176105904 176106036 -41931122 - L1MB2 LINE L1 0 6180 6026 1700 200 75 53 chr3 176107201 176107695 -41929463 + MLT1D LTR MaLR 1 505 0 369 299 104 6 chr3 176107762 176107926 -41929232 - Charlie8 DNA MER1_type -2221 196 17 2256 97 3 7 chr3 176109482 176109780 -41927378 - AluSx SINE Alu -15 297 1 250 252 69 76 chr3 176109803 176109934 -41927224 + MIR SINE MIR 63 192 -70 212 324 36 22 chr3 176111452 176111591 -41925567 - L2 LINE L2 -872 2442 2302 210 213 106 0 chr3 176111774 176111821 -41925337 + MIR3 SINE MIR 135 186 -22 533 295 66 26 chr3 176112220 176112522 -41924636 + L1ME3 LINE L1 4099 4412 -1734 760 214 117 0 chr3 176112543 176112739 -41924419 + MIR SINE MIR 8 226 -36 389 311 43 61 chr3 176112846 176112962 -41924196 + L1ME3 LINE L1 4572 4689 -1457 1786 159 3 24 chr3 176112962 176113258 -41923900 - AluJo SINE Alu -22 290 1 389 311 43 61 chr3 176113258 176113418 -41923740 + L1ME3 LINE L1 4689 4843 -1303 647 183 96 9 chr3 176113499 176113614 -41923544 + FLAM_C SINE Alu 2 126 -17 854 309 66 38 chr3 176113648 176114578 -41922580 + L1ME3 LINE L1 4944 5902 -260 1898 178 0 9 chr3 176114623 176114938 -41922220 + AluJb SINE Alu 1 312 0 569 279 116 5 chr3 176115003 176115193 -41921965 - MER46C DNA MER2_type -126 212 2 2013 88 0 4 chr3 176115517 176115803 -41921355 - AluY SINE Alu 0 306 22 970 192 17 113 chr3 176115927 176116167 -41920991 + MER20 DNA MER1_type 3 219 0 208 278 14 49 chr3 176116548 176116692 -41920466 + A-rich Low_complexity Low_complexity 2 140 0 309 275 188 13 chr3 176116843 176116992 -41920166 + MIR SINE MIR 9 183 -79 1291 164 42 66 chr3 176117376 176117663 -41919495 - AluJo SINE Alu 0 312 33 1324 260 100 60 chr3 176117668 176118643 -41918515 - L1MCc LINE L1 -4616 2506 1279 576 281 12 23 chr3 176119085 176119256 -41917902 - MIR SINE MIR -76 186 18 2515 48 0 0 chr3 176119487 176119777 -41917381 + AluY SINE Alu 5 294 -17 643 251 92 31 chr3 176121359 176121554 -41915604 - MIR SINE MIR -8 254 48 638 291 6 0 chr3 176121613 176121792 -41915366 + L1ME LINE L1 5540 5719 -402 2229 208 63 8 chr3 176121806 176122301 -41914857 - MER21B LTR ERV1 -1 862 341 263 308 0 0 chr3 176122333 176122398 -41914760 - MER21B LTR ERV1 -615 248 184 949 48 96 0 chr3 176122539 176122664 -41914494 + MER85 DNA T2_type 1 137 -2 204 329 14 0 chr3 176122783 176122853 -41914305 - L2 LINE L2 -849 2465 2395 1647 244 80 42 chr3 176123399 176124113 -41913045 + L1ME4a LINE L1 775 1475 -4931 532 237 108 21 chr3 176124195 176124381 -41912777 + MIR SINE MIR 55 256 -6 230 340 33 7 chr3 176124621 176124774 -41912384 - L2 LINE L2 -1608 1706 1550 306 0 0 0 chr3 176124775 176124809 -41912349 + (TTG)n Simple_repeat Simple_repeat 3 36 0 1626 80 14 0 chr3 176125439 176125651 -41911507 - L1PA13 LINE L1 -2 6161 5947 528 157 11 0 chr3 176126105 176126194 -41910964 + AluJb SINE Alu 188 277 -35 554 305 66 38 chr3 176126574 176127076 -41910082 + L1ME4a LINE L1 4665 5180 -1226 2201 87 49 7 chr3 176127516 176127803 -41909355 + AluSq SINE Alu 1 299 -14 1533 212 7 3 chr3 176128100 176128388 -41908770 + AluJb SINE Alu 1 289 -23 2149 119 0 3 chr3 176128399 176128739 -41908419 + AluSx SINE Alu 1 312 0 910 269 134 21 chr3 176128839 176129363 -41907795 + L1ME4a LINE L1 5526 6108 -273 371 277 210 26 chr3 176129917 176130146 -41907012 - L2 LINE L2 0 3313 3127 297 0 0 0 chr3 176130146 176130179 -41906979 + (TG)n Simple_repeat Simple_repeat 1 33 0 * 438 20 0 0 chr3 176130178 176130229 -41906929 + (GA)n Simple_repeat Simple_repeat 1 51 0 371 277 210 26 chr3 176130179 176130309 -41906849 - L2 LINE L2 -186 3127 2947 2090 112 0 14 chr3 176130717 176131043 -41906115 + AluSx SINE Alu 1 322 0 285 266 83 35 chr3 176131059 176131228 -41905930 + L1ME4a LINE L1 6156 6332 -49 233 254 0 0 chr3 176131357 176131416 -41905742 + L1ME LINE L1 5374 5432 -738 1978 283 102 31 chr3 176131475 176131594 -41905564 + HAL1 LINE L1 1252 1361 -1146 2305 101 0 3 chr3 176131594 176131901 -41905257 + AluSc SINE Alu 2 307 -2 1978 283 102 31 chr3 176131901 176132315 -41904843 + HAL1 LINE L1 1361 1744 -763 1903 167 20 0 chr3 176132315 176132620 -41904538 + AluJo SINE Alu 1 311 -1 1978 283 102 31 chr3 176132620 176133058 -41904100 + HAL1 LINE L1 1744 2293 -214 461 229 102 0 chr3 176133123 176133241 -41903917 + MLT1L LTR MaLR 397 526 -89 1396 151 40 0 chr3 176133703 176133954 -41903204 + Tigger2 DNA MER2_type 1 261 -2457 1022 119 0 0 chr3 176133963 176134106 -41903052 + FRAM SINE Alu 29 171 -5 3198 128 8 17 chr3 176134108 176134585 -41902573 + Tigger2 DNA MER2_type 274 746 -1972 1192 116 71 105 chr3 176134645 176134677 -41902481 + Tigger2 DNA MER2_type 2461 2493 -225 1713 183 30 3 chr3 176134677 176134972 -41902186 - AluJb SINE Alu -9 303 1 1192 116 71 105 chr3 176134972 176134995 -41902163 + Tigger2 DNA MER2_type 2493 2515 -203 1525 166 71 44 chr3 176134995 176135290 -41901868 - AluJo SINE Alu -9 303 1 1192 116 71 105 chr3 176135290 176135500 -41901658 + Tigger2 DNA MER2_type 2515 2718 0 336 279 52 45 chr3 176135763 176135917 -41901241 - MIR SINE MIR -1 261 107 254 331 45 30 chr3 176136981 176137114 -41900044 - MIR3 SINE MIR -51 157 23 624 70 0 35 chr3 176137355 176137441 -41899717 - L1MA1 LINE L1 0 6302 6220 216 388 115 7 chr3 176137541 176137845 -41899313 - L2 LINE L2 -2501 813 477 479 307 14 33 chr3 176137955 176138167 -41898991 - L1ME3A LINE L1 0 6170 5963 26 64 0 0 chr3 176138345 176138392 -41898766 + AT_rich Low_complexity Low_complexity 1 47 0 510 274 63 32 chr3 176138444 176138808 -41898350 - L1MEd LINE L1 -862 1881 1556 2312 109 58 5 chr3 176138808 176139150 -41898008 - THE1B LTR MaLR -8 420 1 431 259 33 28 chr3 176139153 176139349 -41897809 - L1MEd LINE L1 -4862 1510 1224 186 285 226 29 chr3 176139811 176139948 -41897210 - MER5A DNA MER1_type -8 170 7 3163 207 72 20 chr3 176140372 176140435 -41896723 - MER21B LTR ERV1 0 863 805 207 0 0 0 chr3 176140435 176140458 -41896700 + (CAAG)n Simple_repeat Simple_repeat 1 23 0 3163 207 72 20 chr3 176140458 176141127 -41896031 - MER21B LTR ERV1 -58 805 93 262 199 27 55 chr3 176141128 176141274 -41895884 + (TTATA)n Simple_repeat Simple_repeat 5 146 0 492 204 39 10 chr3 176141275 176141378 -41895780 - MER21B LTR ERV1 -757 106 1 1912 98 8 0 chr3 176142054 176142299 -41894859 + AluSq SINE Alu 1 247 -66 351 0 0 0 chr3 176142299 176142338 -41894820 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 281 278 69 65 chr3 176142698 176142866 -41894292 + MIR SINE MIR 37 207 -55 2267 94 0 0 chr3 176143301 176143588 -41893570 + AluSc SINE Alu 1 287 -22 2381 92 3 0 chr3 176145721 176146027 -41891131 - AluSx SINE Alu -5 307 1 905 130 8 8 chr3 176146361 176146492 -41890666 - FLAM_C SINE Alu -12 131 1 2294 84 3 29 chr3 176146927 176147101 -41890057 - AluSx SINE Alu -9 303 139 2278 85 10 0 chr3 176147101 176147408 -41889750 - AluY SINE Alu -1 310 1 2294 84 3 29 chr3 176147408 176147544 -41889614 - AluSx SINE Alu -173 139 1 231 320 50 10 chr3 176147774 176147874 -41889284 - L1ME LINE L1 -406 5715 5612 2276 88 3 0 chr3 176147910 176148195 -41888963 - AluSp SINE Alu -18 295 10 240 200 0 0 chr3 176148840 176148885 -41888273 - MLT2C1 LTR ERVL -352 45 1 1139 188 67 13 chr3 176148950 176149189 -41887969 - MLT2C1 LTR ERVL 0 397 146 188 200 25 0 chr3 176149269 176149309 -41887849 + L2 LINE L2 3261 3301 -12 735 183 15 23 chr3 176149313 176149444 -41887714 + FLAM_A SINE Alu 1 130 -3 425 296 108 28 chr3 176151018 176151194 -41885964 - MIR SINE MIR -4 258 69 431 224 227 34 chr3 176151313 176151658 -41885500 - L2 LINE L2 -101 3212 2782 780 126 11 23 chr3 176151738 176151912 -41885246 + (TTTC)n Simple_repeat Simple_repeat 4 175 0 219 69 0 0 chr3 176151910 176151939 -41885219 + (CTTG)n Simple_repeat Simple_repeat 4 32 0 * 1122 81 29 0 chr3 176151940 176152114 -41885044 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 2061 142 13 0 chr3 176152132 176152611 -41884547 - AluSg SINE Alu 0 483 1 2082 70 0 18 chr3 176153593 176153865 -41883293 + AluY SINE Alu 1 267 -44 492 18 0 0 chr3 176154235 176154292 -41882866 + (TTCC)n Simple_repeat Simple_repeat 4 60 0 1989 114 7 0 chr3 176154311 176154582 -41882576 - AluSx SINE Alu -39 273 1 2342 90 10 10 chr3 176154656 176154967 -41882191 + AluSq SINE Alu 1 311 -2 2257 103 0 0 chr3 176155563 176155853 -41881305 - AluSg SINE Alu -20 290 1 265 186 21 113 chr3 176156214 176156311 -41880847 + MER5A DNA MER1_type 9 96 -93 2121 117 40 0 chr3 176156527 176156827 -41880331 + AluSx SINE Alu 1 312 0 1453 186 48 0 chr3 176157699 176157968 -41879190 + AluJo SINE Alu 12 293 -19 2063 131 0 0 chr3 176158464 176158776 -41878382 - AluSx SINE Alu 0 312 1 2118 140 7 0 chr3 176158843 176159256 -41877902 - AluSx SINE Alu 0 415 1 245 315 87 0 chr3 176159630 176159722 -41877436 + MIR SINE MIR 50 149 -113 1172 241 34 41 chr3 176160152 176160446 -41876712 - AluJo SINE Alu -10 292 1 306 0 0 0 chr3 176160877 176160911 -41876247 + (GTTTG)n Simple_repeat Simple_repeat 3 36 0 1549 160 3 94 chr3 176161587 176161699 -41875459 + AluJb SINE Alu 1 122 -190 2268 85 0 36 chr3 176161699 176162004 -41875154 - AluSg SINE Alu -16 294 1 1549 160 3 94 chr3 176162004 176162222 -41874936 + AluJb SINE Alu 122 301 -11 2222 106 3 3 chr3 176163304 176163605 -41873553 - AluSp SINE Alu -12 301 1 1183 136 21 47 chr3 176163645 176163924 -41873234 + AluSp SINE Alu 16 287 -26 233 293 75 0 chr3 176164617 176164723 -41872435 - MLT1J LTR MaLR -12 499 386 422 184 13 0 chr3 176164745 176164821 -41872337 + MLT1F LTR MaLR 2 78 -464 2131 161 18 73 chr3 176164864 176165300 -41871858 + MLT2B2 LTR ERVL 1 412 -103 1807 129 77 19 chr3 176166136 176166446 -41870712 - MLT2B1 LTR ERVL -192 328 1 723 328 96 15 chr3 176166523 176166992 -41870166 + L2 LINE L2 2807 3313 0 303 328 45 15 chr3 176168479 176168613 -41868545 + L2 LINE L2 3133 3270 -2 377 277 0 10 chr3 176169473 176169574 -41867584 - MIR SINE MIR 0 262 163 1549 130 58 8 chr3 176170123 176170384 -41866774 - L1MC1 LINE L1 -172 6161 5888 1001 172 98 29 chr3 176170493 176170697 -41866461 - MLT1F1 LTR MaLR -345 222 5 1911 92 22 79 chr3 176170820 176171136 -41866022 - MSTC LTR MaLR -130 298 1 1035 236 108 63 chr3 176172577 176172958 -41864200 + MLT1J LTR MaLR 1 398 -113 320 359 0 17 chr3 176173050 176173167 -41863991 + MIR SINE MIR 2 116 -146 1136 271 183 19 chr3 176173208 176173689 -41863469 - MLT1G LTR MaLR -71 519 1 1757 126 191 23 chr3 176174850 176175025 -41862133 + LTR48 LTR ERV1 1 145 -642 2231 107 7 3 chr3 176175025 176175323 -41861835 + AluSx SINE Alu 1 299 -13 1757 126 191 23 chr3 176175323 176175535 -41861623 + LTR48 LTR ERV1 145 453 -334 424 121 0 0 chr3 176175529 176175587 -41861571 + LTR48B LTR ERV1 342 399 -245 * 714 134 62 56 chr3 176175583 176175802 -41861356 + LTR48 LTR ERV1 550 707 0 364 223 51 57 chr3 176177183 176177340 -41859818 + MER112 DNA MER1_type 10 165 -95 510 114 0 0 chr3 176177381 176177460 -41859698 + (TTCCC)n Simple_repeat Simple_repeat 4 82 0 248 273 98 0 chr3 176178295 176178401 -41858757 + MIR SINE MIR 40 153 -62 1215 272 97 21 chr3 176179001 176179682 -41857476 + L1MC4a LINE L1 5198 5399 -747 1632 91 14 0 chr3 176180327 176180537 -41856621 + AluSq SINE Alu 1 213 -100 560 224 83 26 chr3 176180939 176181095 -41856063 + FRAM SINE Alu 11 175 -1 1079 247 34 47 chr3 176183263 176183559 -41853599 + AluJo SINE Alu 1 292 -10 229 304 87 0 chr3 176183993 176184085 -41853073 - MIR SINE MIR -113 149 50 2185 133 7 0 chr3 176184459 176184800 -41852358 + AluSx SINE Alu 1 343 0 209 53 0 92 chr3 176184808 176184884 -41852274 + (CGAAA)n Simple_repeat Simple_repeat 2 70 0 1747 124 0 0 chr3 176185076 176185310 -41851848 + AluSx SINE Alu 59 292 -20 2034 144 10 10 chr3 176185316 176185629 -41851529 + AluSq SINE Alu 1 313 0 2197 115 0 0 chr3 176185673 176185961 -41851197 - AluSx SINE Alu -24 288 1 3280 205 48 78 chr3 176186403 176186699 -41850459 + MER21B LTR ERV1 1 304 -559 1653 108 39 118 chr3 176186699 176187031 -41850127 + AluYb8 SINE Alu 1 306 -12 3280 205 48 78 chr3 176187031 176187622 -41849536 + MER21B LTR ERV1 304 862 -1 2205 103 3 31 chr3 176188070 176188391 -41848767 + AluSx SINE Alu 1 312 0 210 313 62 62 chr3 176189118 176189230 -41847928 + L2 LINE L2 3154 3265 -7 208 377 85 0 chr3 176189209 176189339 -41847819 - L2 LINE L2 -10 3262 3122 * 360 0 0 0 chr3 176190158 176190198 -41846960 + (TG)n Simple_repeat Simple_repeat 2 41 0 333 0 0 0 chr3 176190779 176190819 -41846339 - L1PA2 LINE L1 -6 6149 6110 2179 119 0 10 chr3 176191508 176191803 -41845355 + AluSg SINE Alu 2 293 -17 2465 115 28 6 chr3 176192213 176192569 -41844589 + THE1B LTR MaLR 1 364 0 10451 91 28 49 chr3 176192569 176194145 -41843013 + THE1B-int LTR MaLR 1 1543 -37 2793 93 3 3 chr3 176194156 176194520 -41842638 + THE1B LTR MaLR 1 364 0 22 25 0 25 chr3 176194754 176194781 -41842377 + AT_rich Low_complexity Low_complexity 1 28 -11 2270 103 0 7 chr3 176194781 176195072 -41842086 + AluSx SINE Alu 1 289 -23 22 25 0 25 chr3 176195072 176195084 -41842074 + AT_rich Low_complexity Low_complexity 28 39 0 299 232 0 0 chr3 176195265 176195321 -41841837 - MER103 DNA DNA -48 118 63 243 161 54 0 chr3 176195336 176195392 -41841766 - L2 LINE L2 0 3313 3255 1941 135 49 15 chr3 176196310 176196635 -41840523 + MER1B DNA MER1_type 1 336 -1 1879 171 7 7 chr3 176197005 176197314 -41839844 + AluJo SINE Alu 1 309 -3 199 154 0 0 chr3 176198398 176198437 -41838721 - L2 LINE L2 -248 3065 3027 1620 149 82 4 chr3 176198459 176198740 -41838418 - AluSx SINE Alu -9 303 1 596 312 120 60 chr3 176198991 176199308 -41837850 + L2 LINE L2 2931 3266 -6 482 279 0 23 chr3 176200140 176200269 -41836889 + MIR SINE MIR 12 137 -125 266 232 0 0 chr3 176200324 176200380 -41836778 + MIR3 SINE MIR 122 177 -31 308 301 14 62 chr3 176200400 176200546 -41836612 + L2 LINE L2 3123 3261 -11 260 246 0 33 chr3 176200493 176200554 -41836604 + MIR SINE MIR 204 262 0 * 1517 192 3 46 chr3 176200560 176200862 -41836296 - AluJo SINE Alu -23 289 1 441 339 73 46 chr3 176202065 176202437 -41834721 - L2 LINE L2 0 3272 2891 496 320 143 7 chr3 176202716 176203016 -41834142 + L2 LINE L2 2365 2705 -609 277 280 115 66 chr3 176203116 176203149 -41834009 + L2 LINE L2 2681 2711 -602 1514 184 53 0 chr3 176203149 176203415 -41833743 - AluJo SINE Alu -14 298 19 277 280 115 66 chr3 176203415 176203807 -41833351 + L2 LINE L2 2711 3156 -157 2147 115 0 10 chr3 176203807 176204103 -41833055 - AluSq SINE Alu -20 293 1 277 280 115 66 chr3 176204103 176204270 -41832888 + L2 LINE L2 3156 3313 0 311 241 0 25 chr3 176204625 176204704 -41832454 - MIR3 SINE MIR -28 180 104 487 223 60 145 chr3 176205193 176205475 -41831683 + MER102b DNA MER1_type 84 341 0 205 288 76 0 chr3 176205792 176205858 -41831300 - L2 LINE L2 -2 3311 3241 1519 225 27 24 chr3 176205950 176206323 -41830835 + MLT1A2 LTR MaLR 1 374 0 423 221 35 26 chr3 176206467 176206580 -41830578 - MLT1D LTR MaLR -391 114 1 236 289 0 40 chr3 176206701 176206777 -41830381 + CT-rich Low_complexity Low_complexity 3 75 0 1717 185 21 5 chr3 176206817 176207190 -41829968 - L1MB8 LINE L1 -1 6177 5799 2302 185 71 101 chr3 176207192 176207736 -41829422 - L1MB4 LINE L1 -23 6157 5535 286 192 0 0 chr3 176207736 176207788 -41829370 + AluJb SINE Alu 82 133 -169 2302 185 71 101 chr3 176207788 176208236 -41828922 - L1MB4 LINE L1 -645 5535 5075 2064 177 43 46 chr3 176208234 176208836 -41828322 - L1MB8 LINE L1 -353 5825 5270 * 3946 99 60 25 chr3 176208836 176209449 -41827709 + LTR24C LTR ERV1 1 635 0 2064 177 43 46 chr3 176209449 176209499 -41827659 - L1MB8 LINE L1 -908 5270 5221 37 39 0 0 chr3 176209567 176209618 -41827540 + AT_rich Low_complexity Low_complexity 1 51 0 36 62 0 0 chr3 176209707 176209771 -41827387 + AT_rich Low_complexity Low_complexity 1 64 0 368 254 146 0 chr3 176210259 176210369 -41826789 + L2 LINE L2 2116 2241 -1073 753 279 111 9 chr3 176211361 176211587 -41825571 - MIR SINE MIR -5 257 9 315 302 86 63 chr3 176212402 176212657 -41824501 - MIR SINE MIR 0 262 2 1954 114 37 0 chr3 176212736 176213032 -41824126 - AluSx SINE Alu 0 306 1 362 314 22 26 chr3 176213529 176213755 -41823403 + L1M4 LINE L1 19 243 -6299 596 229 18 12 chr3 176214149 176214319 -41822839 + L1MB7 LINE L1 6006 6176 -8 301 282 51 0 chr3 176214843 176214921 -41822237 - MIR SINE MIR -128 134 53 1724 170 26 16 chr3 176214933 176215239 -41821919 + AluJo SINE Alu 1 309 -3 357 267 38 0 chr3 176215277 176215382 -41821776 + L1MC/D LINE L1 5535 5643 -478 284 300 67 0 chr3 176215399 176215519 -41821639 + L1MC/D LINE L1 5741 5868 -1940 210 265 128 51 chr3 176215562 176215679 -41821479 - MIR SINE MIR -131 131 6 435 377 108 8 chr3 176215702 176216185 -41820973 - L2 LINE L2 -562 2752 2222 436 336 7 14 chr3 176217013 176217153 -41820005 + MIR3 SINE MIR 67 205 -3 288 222 0 0 chr3 176217167 176217230 -41819928 - L2 LINE L2 -8 3305 3243 314 272 109 11 chr3 176217372 176217464 -41819694 + L2 LINE L2 3176 3276 -37 639 260 54 50 chr3 176217552 176217829 -41819329 + Charlie2 DNA MER1_type 2 279 -2583 331 186 0 0 chr3 176217900 176217970 -41819188 + Alu SINE Alu 231 300 0 2275 214 57 31 chr3 176217974 176218770 -41818388 + Charlie2 DNA MER1_type 1983 2798 -64 764 241 0 0 chr3 176218781 176218943 -41818215 - FRAM SINE Alu -14 162 1 2178 146 0 0 chr3 176218963 176219272 -41817886 - AluSx SINE Alu -2 310 2 337 332 146 56 chr3 176220318 176220912 -41816246 - L2 LINE L2 0 3272 2631 604 263 151 56 chr3 176220914 176221305 -41815853 - MLT1K LTR MaLR -6 582 155 228 217 58 0 chr3 176221637 176221706 -41815452 + (TAAA)n Simple_repeat Simple_repeat 1 73 0 290 277 8 69 chr3 176222187 176222317 -41814841 + MER102b DNA MER1_type 220 341 0 1960 165 25 10 chr3 176223183 176223589 -41813569 + L1MA3 LINE L1 5894 6305 0 1720 170 24 20 chr3 176223902 176224196 -41812962 + AluJo SINE Alu 4 298 -14 189 300 117 0 chr3 176226165 176226225 -41810933 + MIR SINE MIR 2 68 -194 448 284 71 52 chr3 176226260 176226615 -41810543 - MLT1J2 LTR MaLR 0 450 72 315 0 0 0 chr3 176227112 176227147 -41810011 + (TG)n Simple_repeat Simple_repeat 1 35 0 207 0 0 0 chr3 176227146 176227169 -41809989 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 364 281 0 44 chr3 176227347 176227511 -41809647 + L1MC4a LINE L1 5667 5779 -342 2382 98 0 0 chr3 176227511 176227816 -41809342 + AluSx SINE Alu 1 305 -7 364 281 0 44 chr3 176227816 176227861 -41809297 + L1MC4a LINE L1 5779 5824 -297 347 323 185 5 chr3 176228158 176228353 -41808805 - MIR SINE MIR -13 249 20 783 195 85 0 chr3 176229182 176229346 -41807812 + MER5B DNA MER1_type 1 178 0 21 0 0 0 chr3 176230802 176230823 -41806335 + AT_rich Low_complexity Low_complexity 1 21 0 2204 115 0 0 chr3 176231752 176232065 -41805093 + AluSq SINE Alu 1 313 0 481 248 72 46 chr3 176233037 176233190 -41803968 - L2 LINE L2 -12 3260 3104 683 239 11 11 chr3 176233511 176233687 -41803471 + MER5B DNA MER1_type 3 178 0 25 0 0 0 chr3 176234215 176234240 -41802918 + AT_rich Low_complexity Low_complexity 1 25 0 315 104 0 0 chr3 176236317 176236365 -41800793 + (TCCC)n Simple_repeat Simple_repeat 1 48 0 2195 113 0 0 chr3 176236365 176236657 -41800501 - AluY SINE Alu -17 294 3 1011 173 64 48 chr3 176237409 176237624 -41799534 - L1MC5 LINE L1 -36 7925 7702 2560 61 3 0 chr3 176237624 176237934 -41799224 - AluY SINE Alu 0 311 1 1011 173 64 48 chr3 176237934 176238030 -41799128 - L1MC5 LINE L1 -259 7702 7609 221 299 52 90 chr3 176238280 176238414 -41798744 - L3 LINE CR1 -163 1414 1286 183 261 22 0 chr3 176238542 176238588 -41798570 - L2 LINE L2 -43 3270 3224 706 268 129 5 chr3 176239273 176239482 -41797676 - MIR SINE MIR -27 235 1 2105 111 123 0 chr3 176240657 176240981 -41796177 + THE1B LTR MaLR 1 364 0 1273 129 36 5 chr3 176240994 176241187 -41795971 - AluJo SINE Alu -30 282 84 210 309 0 0 chr3 176241784 176241839 -41795319 + L2 LINE L2 3210 3264 -8 274 236 182 36 chr3 176242942 176243107 -41794051 + MIR SINE MIR 34 222 -40 223 307 0 27 chr3 176243264 176243339 -41793819 - L3 LINE CR1 -177 1400 1328 495 82 0 0 chr3 176243344 176243417 -41793741 + (CA)n Simple_repeat Simple_repeat 2 74 0 874 220 214 44 chr3 176245576 176245940 -41791218 + MLT1H LTR MaLR 14 439 -110 219 88 0 0 chr3 176246986 176247020 -41790138 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 512 211 20 121 chr3 176247020 176247219 -41789939 + MER102a DNA MER1_type 151 329 -1 232 321 0 37 chr3 176247295 176247376 -41789782 - MIR3 SINE MIR -5 203 126 358 215 222 7 chr3 176248243 176248378 -41788780 - MIR SINE MIR -15 247 84 222 192 0 0 chr3 176248455 176248507 -41788651 + A-rich Low_complexity Low_complexity 1 52 0 259 265 20 20 chr3 176248511 176248609 -41788549 + L1ME4a LINE L1 5719 5816 -1992 308 252 140 9 chr3 176248709 176248816 -41788342 + L1ME4a LINE L1 5870 5990 -131 2790 16 0 0 chr3 176248906 176249256 -41787902 - AluYa5 SINE Alu 0 350 1 2190 100 0 13 chr3 176249258 176249557 -41787601 - AluSx SINE Alu -17 295 1 2274 103 0 3 chr3 176250385 176250686 -41786472 - AluSq SINE Alu -13 300 1 308 237 0 0 chr3 176250806 176250882 -41786276 + HsTC2 DNA Tc2 1246 1321 -577 874 207 37 4 chr3 176250959 176251201 -41785957 + HsTC2 DNA Tc2 1641 1890 -8 768 215 126 5 chr3 176251237 176251451 -41785707 - MIR SINE MIR -21 241 2 734 179 0 0 chr3 176251802 176251941 -41785217 - FLAM_A SINE Alu 0 139 1 189 0 0 0 chr3 176252714 176252735 -41784423 + (T)n Simple_repeat Simple_repeat 1 21 0 480 271 115 65 chr3 176255510 176255849 -41781309 + HAL1 LINE L1 3 358 -2149 536 279 105 41 chr3 176255891 176256206 -41780952 + HAL1 LINE L1 430 764 -1743 679 238 60 101 chr3 176256207 176256505 -41780653 - L2 LINE L2 0 3313 3028 464 287 69 29 chr3 176256645 176257063 -41780095 + L1M4 LINE L1 3327 3761 -2385 23 68 0 0 chr3 176257066 176257110 -41780048 + AT_rich Low_complexity Low_complexity 1 44 0 716 306 29 37 chr3 176257133 176257650 -41779508 + L1M4 LINE L1 3763 4275 -1871 1296 287 66 32 chr3 176257855 176259774 -41777384 + L1ME LINE L1 3763 5802 -360 300 57 0 0 chr3 176259883 176259918 -41777240 - U2 snRNA snRNA -153 35 1 781 216 118 12 chr3 176259918 176260173 -41776985 + HAL1 LINE L1 2117 2398 -109 254 232 21 53 chr3 176260190 176260285 -41776873 - L1MC4 LINE L1 -1337 6705 6614 293 195 16 16 chr3 176260327 176260450 -41776708 + (TA)n Simple_repeat Simple_repeat 1 123 0 365 339 36 30 chr3 176260562 176260730 -41776428 - MIR3 SINE MIR -23 185 17 275 273 242 0 chr3 176261328 176261427 -41775731 + MER5A DNA MER1_type 67 189 0 21 0 0 0 chr3 176261448 176261469 -41775689 + AT_rich Low_complexity Low_complexity 1 21 0 271 245 0 0 chr3 176262685 176262738 -41774420 - L2 LINE L2 -77 3195 3143 751 204 24 24 chr3 176263368 176263535 -41773623 - MER3 DNA MER1_type -5 204 38 405 0 0 0 chr3 176263818 176263863 -41773295 + (TG)n Simple_repeat Simple_repeat 2 46 0 1274 250 86 82 chr3 176264609 176264982 -41772176 - L1ME4a LINE L1 -44 6077 5707 2335 99 0 0 chr3 176264982 176265275 -41771883 - AluSc SINE Alu -16 293 1 1274 250 86 82 chr3 176265275 176265658 -41771500 - L1ME4a LINE L1 -414 5707 5314 193 267 40 27 chr3 176265814 176265889 -41771269 + MIR SINE MIR 161 236 -26 230 323 152 6 chr3 176265897 176266061 -41771097 - MIR3 SINE MIR -19 189 2 232 259 19 0 chr3 176267825 176267879 -41769279 - MER5A DNA MER1_type -94 95 41 342 115 0 0 chr3 176268202 176268263 -41768895 + (CA)n Simple_repeat Simple_repeat 1 61 0 664 195 136 30 chr3 176268285 176268454 -41768704 - MER5A DNA MER1_type 0 189 3 27 0 0 0 chr3 176269619 176269646 -41767512 + AT_rich Low_complexity Low_complexity 1 27 0 463 261 70 6 chr3 176270350 176270507 -41766651 + MIR SINE MIR 96 262 0 1247 172 84 0 chr3 176270572 176270810 -41766348 + L1MB7 LINE L1 5927 6184 0 206 276 181 19 chr3 176271119 176271224 -41765934 - MIR3 SINE MIR -43 165 44 258 307 71 21 chr3 176271909 176272049 -41765109 + L2 LINE L2 3124 3270 -2 339 230 72 62 chr3 176272565 176272774 -41764384 + Charlie7 DNA MER1_type 2401 2611 -1 404 247 63 44 chr3 176276675 176276833 -41760325 - MIR SINE MIR -2 260 100 1583 181 3 55 chr3 176276935 176277244 -41759914 - AluJb SINE Alu -15 297 5 2638 103 78 37 chr3 176277305 176277674 -41759484 + MSTA LTR MaLR 3 392 -36 2172 116 41 0 chr3 176277674 176277968 -41759190 - AluSq SINE Alu -7 306 1 2638 103 78 37 chr3 176277968 176278007 -41759151 + MSTA LTR MaLR 392 428 0 308 289 93 0 chr3 176278245 176278342 -41758816 + L2 LINE L2 3204 3309 -4 240 261 22 11 chr3 176278963 176279055 -41758103 + (TA)n Simple_repeat Simple_repeat 1 93 0 431 214 51 20 chr3 176279459 176279557 -41757601 + MER5A DNA MER1_type 9 109 -80 22 0 0 0 chr3 176280450 176280472 -41756686 + AT_rich Low_complexity Low_complexity 1 22 0 323 314 93 85 chr3 176282458 176282558 -41754600 - L2 LINE L2 -4 3268 3170 2157 125 0 3 chr3 176282558 176282863 -41754295 + AluSx SINE Alu 1 304 -8 323 314 93 85 chr3 176282863 176283020 -41754138 - L2 LINE L2 -102 3170 3009 333 176 44 15 chr3 176283570 176283638 -41753520 + MER116 DNA Mariner 11 80 0 303 28 0 0 chr3 176285606 176285642 -41751516 + (A)n Simple_repeat Simple_repeat 1 36 0 2379 68 0 43 chr3 176286331 176286656 -41750502 - AluY SINE Alu 0 311 1 1944 121 24 24 chr3 176287526 176287824 -41749334 - AluSx SINE Alu -14 298 1 339 321 18 9 chr3 176288570 176288679 -41748479 - MIR3 SINE MIR -7 201 92 2286 136 42 20 chr3 176288772 176289126 -41748032 + MLT1A1 LTR MaLR 3 364 -1 491 258 69 6 chr3 176289478 176289637 -41747521 + L1ME2 LINE L1 5986 6154 -10 2372 118 49 6 chr3 176290307 176290653 -41746505 - MER46B DNA MER2_type 0 236 1 266 278 68 105 chr3 176290962 176291124 -41746034 + L2 LINE L2 3158 3313 0 289 277 45 39 chr3 176291510 176291665 -41745493 - L2 LINE L2 -1020 2294 2139 1833 196 23 31 chr3 176291764 176292152 -41745006 + MLT1D LTR MaLR 117 501 -4 1990 132 58 0 chr3 176292154 176292465 -41744693 - MER44D DNA MER2_type 0 609 11 3137 159 49 8 chr3 176293362 176293890 -41743268 + MER44D DNA MER2_type 1 605 0 1932 103 7 11 chr3 176294865 176295137 -41742021 - AluSx SINE Alu -27 285 15 411 272 110 17 chr3 176295142 176295315 -41741843 + L2 LINE L2 3081 3269 -44 2401 71 0 10 chr3 176295377 176295685 -41741473 + AluY SINE Alu 1 305 -6 197 206 79 48 chr3 176295781 176295844 -41741314 + MIR SINE MIR 82 146 -116 271 250 0 0 chr3 176296019 176296079 -41741079 - L1M4 LINE L1 -1779 4367 4308 247 290 10 20 chr3 176299179 176299279 -41737879 - Charlie3 DNA MER1_type -304 2406 2308 276 185 0 0 chr3 176300828 176300882 -41736276 + (TA)n Simple_repeat Simple_repeat 1 54 0 248 327 29 0 chr3 176300964 176301068 -41736090 + MIR SINE MIR 38 144 -64 2668 24 0 0 chr3 176301406 176301700 -41735458 - AluYb8 SINE Alu -4 314 21 696 322 115 35 chr3 176303088 176303630 -41733528 + L2 LINE L2 2694 3271 -1 634 203 145 0 chr3 176305355 176305493 -41731665 - MER45A DNA AcHobo -17 161 4 957 259 174 44 chr3 176305999 176306521 -41730637 + L2 LINE L2 36 625 -2689 311 102 41 0 chr3 176306745 176306794 -41730364 - AluSp SINE Alu -146 157 107 277 278 35 62 chr3 176306798 176306942 -41730216 - MLT1J LTR MaLR -72 439 300 486 169 0 0 chr3 176307006 176307083 -41730075 + U2 snRNA snRNA 1 77 -111 428 286 109 26 chr3 176307101 176307293 -41729865 - MLT1J LTR MaLR -298 213 6 506 307 78 5 chr3 176307570 176307762 -41729396 + MIR SINE MIR 7 212 -50 2326 83 3 3 chr3 176309467 176309767 -41727391 + AluSx SINE Alu 1 300 -12 271 263 40 20 chr3 176310484 176310583 -41726575 + MLT1L LTR MaLR 167 267 -348 441 251 170 23 chr3 176311562 176311733 -41725425 + MIR SINE MIR 10 205 -57 1670 239 48 56 chr3 176312313 176312379 -41724779 + MLT1J LTR MaLR 13 78 -433 213 39 0 0 chr3 176312379 176312405 -41724753 + (CA)n Simple_repeat Simple_repeat 2 27 0 1670 239 48 56 chr3 176312405 176312840 -41724318 + MLT1J LTR MaLR 78 510 -1 424 273 93 27 chr3 176313279 176313429 -41723729 + MIR SINE MIR 59 218 -44 199 344 49 57 chr3 176313488 176313610 -41723548 + MIR SINE MIR 20 140 -68 249 130 22 0 chr3 176314611 176314657 -41722501 + Charlie8 DNA MER1_type 76 122 -2295 417 254 91 0 chr3 176315418 176315528 -41721630 + L2 LINE L2 3194 3313 0 300 313 46 78 chr3 176315575 176315882 -41721276 + L2 LINE L2 2590 2886 -428 327 209 0 45 chr3 176316174 176316241 -41720917 - MIR SINE MIR -58 150 87 2250 101 0 7 chr3 176316776 176317100 -41720058 - AluSx SINE Alu 0 312 1 636 275 30 7 chr3 176317200 176317390 -41719768 - MIR SINE MIR -27 181 1 1525 158 102 17 chr3 176317406 176317807 -41719351 + LTR54 LTR ERV1 1 460 -38 1499 89 0 5 chr3 176317807 176317998 -41719160 + AluYa5 SINE Alu 105 294 -17 1525 158 102 17 chr3 176317998 176318037 -41719121 + LTR54 LTR ERV1 460 494 -4 344 253 13 0 chr3 176319572 176319647 -41717511 - MER5A DNA MER1_type -48 141 66 351 295 105 37 chr3 176319708 176319898 -41717260 + L2 LINE L2 2836 3038 -234 376 230 92 9 chr3 176320009 176320135 -41717023 + MIR SINE MIR 33 167 -63 606 180 49 16 chr3 176320166 176320288 -41716870 - MIR SINE MIR -124 138 13 353 244 0 118 chr3 176320595 176320714 -41716444 + MER5B DNA MER1_type 74 178 0 858 131 21 21 chr3 176320815 176320960 -41716198 - Charlie4 DNA MER1_type -1 1960 1816 2556 177 83 13 chr3 176321415 176321718 -41715440 + MLT1D LTR MaLR 3 352 -153 2020 128 0 0 chr3 176321718 176322000 -41715158 + AluSx SINE Alu 1 282 -30 2556 177 83 13 chr3 176322000 176322166 -41714992 + MLT1D LTR MaLR 352 505 0 263 309 37 90 chr3 176322255 176322304 -41714854 + MER5B DNA MER1_type 1 51 -127 189 94 0 0 chr3 176322304 176322336 -41714822 + (CAGAGA)n Simple_repeat Simple_repeat 2 33 0 263 309 37 90 chr3 176322336 176322474 -41714684 + MER5B DNA MER1_type 51 178 0 306 239 221 52 chr3 176323086 176323299 -41713859 - MIR SINE MIR 0 262 14 620 271 81 58 chr3 176323913 176324359 -41712799 + LTR33A LTR ERVL 66 521 -2 2013 117 28 3 chr3 176324876 176325167 -41711991 - AluSx SINE Alu -14 298 1 971 161 52 6 chr3 176325884 176326058 -41711100 + MER5A DNA MER1_type 7 188 -1 1864 175 61 3 chr3 176326093 176326435 -41710723 + MLT2D LTR ERVL 5 366 -48 1425 148 40 0 chr3 176326487 176326710 -41710448 - MER46A DNA MER2_type 0 236 5 366 89 18 0 chr3 176326733 176326789 -41710369 + MLT2D LTR ERVL 464 520 0 277 219 79 53 chr3 176326816 176326930 -41710228 + L2 LINE L2 3196 3312 -1 302 245 82 71 chr3 176328381 176328479 -41708679 + MIR SINE MIR 47 145 -117 419 77 0 15 chr3 176328842 176328907 -41708251 + (CA)n Simple_repeat Simple_repeat 2 65 0 2174 106 14 0 chr3 176330623 176330916 -41706242 + AluSx SINE Alu 1 297 -15 225 235 0 20 chr3 176333277 176333328 -41703830 + MIR SINE MIR 117 166 -96 203 292 0 0 chr3 176333940 176333988 -41703170 + L2 LINE L2 3265 3312 -1 1028 108 0 0 chr3 176334100 176334229 -41702929 + AluSq/x SINE Alu 1 129 -184 467 221 0 49 chr3 176334229 176334351 -41702807 + L2 LINE L2 1758 1873 -1441 1027 166 91 0 chr3 176334498 176334673 -41702485 - MER3 DNA MER1_type -17 192 2 714 226 162 8 chr3 176334682 176334916 -41702242 + L2 LINE L2 2129 2398 -916 1930 193 100 93 chr3 176336097 176336657 -41700501 + MLT1F1 LTR MaLR 4 567 0 527 319 123 70 chr3 176338400 176338830 -41698328 - L2 LINE L2 -1 3271 2819 1558 175 28 21 chr3 176338977 176339262 -41697896 + AluJo SINE Alu 1 287 -25 2038 132 7 0 chr3 176339301 176339610 -41697548 + AluSx SINE Alu 1 311 0 369 188 24 24 chr3 176339986 176340071 -41697087 - MER117 DNA MER1_type -52 145 61 309 266 71 18 chr3 176340525 176340638 -41696520 - MER103 DNA DNA -45 121 3 968 287 44 10 chr3 176341133 176341520 -41695638 - LTR16A LTR ERVL -19 431 32 240 358 36 45 chr3 176341782 176341832 -41695326 + MIR SINE MIR 2 51 -211 1680 163 9 41 chr3 176341832 176342151 -41695007 - AluJo SINE Alu -2 310 2 240 358 36 45 chr3 176342151 176342321 -41694837 + MIR SINE MIR 51 220 -42 1460 167 179 75 chr3 176342372 176342786 -41694372 + MSTB2 LTR MaLR 1 457 0 4673 189 51 16 chr3 176343239 176343277 -41693881 + L1MB7 LINE L1 4428 4463 -1721 2297 109 3 0 chr3 176343277 176343588 -41693570 + AluSx SINE Alu 1 312 0 4673 189 51 16 chr3 176343588 176345203 -41691955 + L1MB7 LINE L1 4463 6134 -50 2336 89 0 3 chr3 176345203 176345507 -41691651 + AluSg SINE Alu 1 303 -7 4673 189 51 16 chr3 176345507 176345538 -41691620 + L1MB7 LINE L1 6134 6162 -22 621 192 0 0 chr3 176345543 176345642 -41691516 - AluSg/x SINE Alu -19 293 195 302 245 82 71 chr3 176346200 176346298 -41690860 + MIR SINE MIR 47 145 -117 419 77 0 15 chr3 176346663 176346728 -41690430 + (CA)n Simple_repeat Simple_repeat 2 65 0 2174 106 14 0 chr3 176348442 176348735 -41688423 + AluSx SINE Alu 1 297 -15 225 235 0 20 chr3 176351096 176351147 -41686011 + MIR SINE MIR 117 166 -96 203 292 0 0 chr3 176351759 176351807 -41685351 + L2 LINE L2 3265 3312 -1 2258 118 0 0 chr3 176351919 176352216 -41684942 + AluSq SINE Alu 1 297 -16 267 257 44 62 chr3 176352790 176352903 -41684255 + MIR3 SINE MIR 89 199 -9 1866 147 3 17 chr3 176353710 176354009 -41683149 - AluSx SINE Alu -17 295 1 852 168 25 49 chr3 176354874 176355077 -41682081 + L1MD3 LINE L1 7798 7995 0 2306 59 10 40 chr3 176355102 176355405 -41681753 + AluY SINE Alu 1 294 -17 32 0 0 0 chr3 176355769 176355801 -41681357 + AT_rich Low_complexity Low_complexity 1 32 0 376 253 56 16 chr3 176356073 176356188 -41680970 + MIR3 SINE MIR 39 158 -50 523 299 62 43 chr3 176356201 176356525 -41680633 + MER102b DNA MER1_type 12 341 0 328 208 0 13 chr3 176357168 176357245 -41679913 + LTR30 LTR ERV1 546 621 -101 189 0 0 0 chr3 176357245 176357266 -41679892 + (A)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr3 176359204 176359227 -41677931 + AT_rich Low_complexity Low_complexity 1 23 0 213 216 45 57 chr3 176360213 176360301 -41676857 + MIR3 SINE MIR 117 203 -5 2452 88 0 0 chr3 176360559 176360864 -41676294 + AluSx SINE Alu 1 305 -7 1836 118 46 11 chr3 176361157 176361437 -41675721 + AluSx SINE Alu 1 290 -22 21 0 0 0 chr3 176361886 176361907 -41675251 + AT_rich Low_complexity Low_complexity 1 21 0 1960 218 54 52 chr3 176362910 176363041 -41674117 + L1ME2 LINE L1 5539 5668 -496 2057 134 3 0 chr3 176363041 176363332 -41673826 + AluSq SINE Alu 1 292 -21 1960 218 54 52 chr3 176363332 176363816 -41673342 + L1ME2 LINE L1 5668 6155 -9 2415 70 0 0 chr3 176363824 176364132 -41673026 - AluSq SINE Alu 0 308 1 393 179 64 0 chr3 176365505 176365583 -41671575 + MIR3 SINE MIR 78 160 -48 198 0 0 0 chr3 176365606 176365628 -41671530 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 588 255 157 27 chr3 176365632 176365969 -41671189 - L2 LINE L2 -24 3289 2909 225 108 0 0 chr3 176368902 176368939 -41668219 + (TCC)n Simple_repeat Simple_repeat 1 37 0 180 0 0 0 chr3 176369097 176369117 -41668041 + (CTG)n Simple_repeat Simple_repeat 3 22 0 265 73 0 36 chr3 176369614 176369669 -41667489 + (CCCCG)n Simple_repeat Simple_repeat 1 53 0 222 280 246 5 chr3 176372239 176372450 -41664708 + L2 LINE L2 2473 2734 -580 361 250 48 0 chr3 176372518 176372602 -41664556 + L2 LINE L2 2971 3058 -214 720 192 62 28 chr3 176373013 176373190 -41663968 - MIR SINE MIR -67 195 13 435 169 20 115 chr3 176374796 176374944 -41662214 + MER91C DNA MER1_type 7 140 0 2328 99 0 0 chr3 176375150 176375443 -41661715 + AluSg SINE Alu 1 293 -17 262 180 0 0 chr3 176375972 176376022 -41661136 - Charlie8 DNA MER1_type -11 2406 2357 2360 123 19 25 chr3 176376092 176376458 -41660700 + THE1B LTR MaLR 1 364 0 12114 85 3 7 chr3 176376458 176378044 -41659114 + THE1B-int LTR MaLR 1 1580 0 2271 113 21 43 chr3 176378044 176378345 -41658813 + THE1B LTR MaLR 1 294 -70 2422 83 0 0 chr3 176378345 176378647 -41658511 - AluY SINE Alu -9 302 1 2271 113 21 43 chr3 176378647 176378717 -41658441 + THE1B LTR MaLR 294 364 0 611 259 0 0 chr3 176378844 176378975 -41658183 - MER94 DNA DNA -1 133 3 492 293 45 34 chr3 176379168 176379434 -41657724 + L1ME4a LINE L1 5355 5623 -498 370 268 122 8 chr3 176379436 176379559 -41657599 - L2 LINE L2 -2 3270 3134 1083 297 52 37 chr3 176379949 176380549 -41656609 - L2 LINE L2 -656 2658 2050 315 264 127 32 chr3 176380550 176380766 -41656392 + L1ME4a LINE L1 5623 5817 -304 2554 142 36 5 chr3 176380766 176381181 -41655977 + MSTA LTR MaLR 1 428 0 315 264 127 32 chr3 176381181 176381363 -41655795 + L1ME4a LINE L1 5817 6093 -28 1790 116 82 99 chr3 176381399 176381752 -41655406 - MSTA LTR MaLR -53 375 29 2312 86 0 13 chr3 176381753 176382055 -41655103 + AluY SINE Alu 1 298 -13 887 208 91 5 chr3 176382229 176382426 -41654732 - MER58C DNA MER1_type -1 214 1 200 233 0 0 chr3 176382794 176382837 -41654321 + L2 LINE L2 2429 2471 -843 259 276 0 78 chr3 176382862 176382978 -41654180 + LTR16A1 LTR ERVL 1 107 -350 * 567 233 132 11 chr3 176382974 176383163 -41653995 + LTR16A1 LTR ERVL 246 457 0 234 30 0 0 chr3 176383201 176383234 -41653924 + L1MA3 LINE L1 6272 6304 -1 238 250 0 0 chr3 176383255 176383299 -41653859 + (TG)n Simple_repeat Simple_repeat 1 44 0 23 40 0 0 chr3 176383334 176383359 -41653799 + GC_rich Low_complexity Low_complexity 1 25 0 221 182 18 0 chr3 176383452 176383507 -41653651 + G-rich Low_complexity Low_complexity 2 57 0 22 0 0 0 chr3 176383594 176383616 -41653542 + GC_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr3 176383759 176383798 -41653360 + GC_rich Low_complexity Low_complexity 1 39 0 1279 120 3 215 chr3 176384804 176385186 -41651972 - AluJb SINE Alu 0 302 2 468 222 72 0 chr3 176385707 176385860 -41651298 + MER113 DNA MER1_type? 33 196 -325 656 192 29 35 chr3 176385893 176386065 -41651093 + MER104 DNA Tc2 7 177 -3 276 365 63 77 chr3 176387052 176387480 -41649678 - L2 LINE L2 -24 3248 2827 247 266 125 23 chr3 176388085 176388213 -41648945 - L1MC5 LINE L1 -79 7882 7742 2476 57 10 25 chr3 176389169 176389483 -41647675 - AluY SINE Alu -2 309 1 23 33 0 0 chr3 176389912 176389942 -41647216 + AT_rich Low_complexity Low_complexity 1 30 0 1815 209 81 47 chr3 176390260 176390876 -41646282 - L1MD2 LINE L1 -1 6358 5722 2210 104 0 58 chr3 176391192 176391518 -41645640 + AluSx SINE Alu 1 307 -5 1983 114 24 3 chr3 176391941 176392230 -41644928 - AluSx SINE Alu -17 295 1 343 301 26 39 chr3 176392995 176393148 -41644010 - L2 LINE L2 0 3272 3122 249 33 0 0 chr3 176393387 176393417 -41643741 + (T)n Simple_repeat Simple_repeat 1 30 0 630 305 71 0 chr3 176394717 176394956 -41642202 + L2 LINE L2 2551 2806 -508 371 262 49 51 chr3 176394958 176395148 -41642010 - MER20B DNA MER1_type -1 218 31 556 278 162 41 chr3 176395224 176395569 -41641589 + L2 LINE L2 2926 3312 -1 25 51 0 0 chr3 176395910 176395949 -41641209 + AT_rich Low_complexity Low_complexity 1 39 0 462 314 26 5 chr3 176396254 176396445 -41640713 - MER117 DNA MER1_type -2 195 1 710 224 18 18 chr3 176396747 176396917 -41640241 + MER5A DNA MER1_type 20 189 0 325 23 0 23 chr3 176397145 176397189 -41639969 + AluY SINE Alu 1 43 -265 216 301 42 43 chr3 176398002 176398126 -41639032 - MIR SINE MIR -63 145 39 2350 91 3 3 chr3 176398449 176398747 -41638411 + AluSx SINE Alu 1 298 -14 268 289 179 16 chr3 176398866 176399056 -41638102 + L3b LINE CR1 1233 1453 -130 228 111 0 0 chr3 176399169 176399205 -41637953 + (A)n Simple_repeat Simple_repeat 1 36 0 221 398 26 0 chr3 176399270 176399383 -41637775 - MIR SINE MIR -64 144 29 2431 86 3 0 chr3 176399539 176399843 -41637315 + AluSg SINE Alu 1 305 -5 180 0 0 0 chr3 176401092 176401112 -41636046 + (CCCTG)n Simple_repeat Simple_repeat 1 20 0 1822 95 38 26 chr3 176401625 176401889 -41635269 + AluSx SINE Alu 1 267 -45 356 278 23 15 chr3 176403147 176403280 -41633878 + L1ME LINE L1 5612 5745 -376 459 222 21 139 chr3 176403307 176403501 -41633657 - MIR SINE MIR 0 262 92 504 280 33 28 chr3 176403769 176403980 -41633178 - L1MC4a LINE L1 -1923 5885 5674 457 290 116 13 chr3 176404096 176404435 -41632723 - L1MC4a LINE L1 -1662 4484 4109 2206 120 10 0 chr3 176404594 176404903 -41632255 - AluSx SINE Alu 0 312 1 200 57 0 29 chr3 176405814 176405849 -41631309 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 473 254 67 34 chr3 176406298 176406507 -41630651 - L2 LINE L2 0 3313 3098 1189 208 143 36 chr3 176407584 176408061 -41629097 - Charlie2 DNA MER1_type 0 2862 2335 2170 125 16 0 chr3 176408206 176408511 -41628647 + AluSx SINE Alu 1 310 -2 426 309 40 29 chr3 176408570 176408745 -41628413 + MLT1J2 LTR MaLR 266 442 -8 905 216 142 9 chr3 176408848 176409080 -41628078 - Charlie2 DNA MER1_type -741 2121 1859 649 252 223 0 chr3 176409091 176409329 -41627829 - Charlie2 DNA MER1_type -2463 319 29 345 278 132 31 chr3 176409494 176409874 -41627284 + L1ME4a LINE L1 5255 5685 -436 363 295 132 29 chr3 176410298 176410579 -41626579 + L1ME4a LINE L1 5809 6118 -3 323 283 153 29 chr3 176410911 176411125 -41626033 + MIR SINE MIR 15 252 -10 213 121 0 0 chr3 176411152 176411185 -41625973 + (CA)n Simple_repeat Simple_repeat 2 34 0 23 86 0 0 chr3 176412782 176412840 -41624318 + AT_rich Low_complexity Low_complexity 1 58 0 2167 125 3 3 chr3 176412886 176413197 -41623961 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr3 176413253 176413274 -41623884 + AT_rich Low_complexity Low_complexity 1 21 0 38748 67 6 5 chr3 176413373 176419514 -41617644 - L1PA5 LINE L1 0 6154 3 2001 155 3 0 chr3 176419514 176419817 -41617341 - AluSx SINE Alu -8 304 1 965 87 37 0 chr3 176420457 176420618 -41616540 + CT-rich Low_complexity Low_complexity 2 168 0 2060 98 25 0 chr3 176420618 176420892 -41616266 - AluSp SINE Alu -32 281 1 700 145 15 0 chr3 176420895 176421026 -41616132 + CT-rich Low_complexity Low_complexity 1 133 0 340 91 0 0 chr3 176421026 176421070 -41616088 + (TTCCC)n Simple_repeat Simple_repeat 4 47 0 1626 152 12 8 chr3 176421071 176421327 -41615831 - AluJo SINE Alu -45 267 11 261 0 0 0 chr3 176421800 176421829 -41615329 + (CAG)n Simple_repeat Simple_repeat 1 29 0 263 173 0 111 chr3 176421996 176422077 -41615081 + LTR33A LTR ERVL 444 515 -8 1740 11 0 0 chr3 176422381 176422572 -41614586 - AluYa5 SINE Alu 0 311 121 367 130 0 0 chr3 176423005 176423074 -41614084 - L1 LINE L1 -1096 5050 4982 3082 180 100 22 chr3 176423098 176423875 -41613283 - L1MA9 LINE L1 -24 6288 5451 1334 181 36 0 chr3 176424323 176424626 -41612532 - L1MD1 LINE L1 0 6242 5929 983 277 51 49 chr3 176424702 176425189 -41611969 + LTR33 LTR ERVL 31 518 -3 185 220 0 17 chr3 176425772 176425831 -41611327 + GA-rich Low_complexity Low_complexity 3 60 0 569 266 100 86 chr3 176426530 176426880 -41610278 + L2 LINE L2 2959 3313 0 2321 68 0 0 chr3 176427767 176428071 -41609087 + AluSg SINE Alu 1 304 0 2194 104 0 0 chr3 176428510 176428962 -41608196 + AluSq SINE Alu 3 454 0 253 200 0 0 chr3 176429164 176429209 -41607949 - L2 LINE L2 -2 3270 3226 1777 154 58 10 chr3 176429327 176429619 -41607539 - AluSg SINE Alu -4 306 1 211 355 101 24 chr3 176429804 176429973 -41607185 - L2 LINE L2 -208 3064 2883 254 272 0 26 chr3 176431769 176431898 -41605260 - MIR SINE MIR -96 166 2 677 125 36 0 chr3 176432383 176432495 -41604663 + L1MC1 LINE L1 6212 6327 -6 520 184 135 0 chr3 176432661 176432802 -41604356 - MIR SINE MIR -13 249 90 237 188 21 0 chr3 176432827 176432875 -41604283 + (CATAC)n Simple_repeat Simple_repeat 3 51 0 2079 124 24 3 chr3 176432944 176433234 -41603924 - AluSx SINE Alu -16 296 1 289 294 0 0 chr3 176433246 176433348 -41603810 - L1MD1 LINE L1 -392 5729 5628 365 298 112 17 chr3 176433451 176433629 -41603529 - L1MC5 LINE L1 -490 7471 7277 563 307 107 4 chr3 176434373 176434598 -41602560 + MIR SINE MIR 2 249 -13 2146 116 0 23 chr3 176434832 176435142 -41602016 + AluSx SINE Alu 7 309 -3 262 271 125 30 chr3 176435156 176435290 -41601868 - MIR3 SINE MIR -52 156 9 297 331 50 8 chr3 176436187 176436308 -41600850 - L2 LINE L2 0 3313 3188 * 698 304 116 36 chr3 176436305 176437213 -41599945 + L2 LINE L2 2180 3272 0 183 250 0 0 chr3 176437321 176437365 -41599793 + MIR SINE MIR 195 238 -24 305 235 15 0 chr3 176438615 176438683 -41598475 + L2 LINE L2 3245 3313 0 695 43 0 11 chr3 176439160 176439252 -41597906 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 1921 120 25 0 chr3 176439254 176439506 -41597652 - AluSq SINE Alu -32 281 20 336 24 0 0 chr3 176439506 176439547 -41597611 + (TTAGGG)n Simple_repeat Simple_repeat 2 42 0 1921 120 25 0 chr3 176439547 176439568 -41597590 - AluSq SINE Alu -293 20 1 206 173 39 58 chr3 176440792 176440844 -41596314 - L3 LINE CR1 -1202 375 325 26807 90 5 26 chr3 176441085 176441648 -41595510 + L1PA7 LINE L1 1508 2081 -4388 1015 9 0 0 chr3 176441648 176441762 -41595396 + AluYb8 SINE Alu 205 318 0 26807 90 5 26 chr3 176441762 176446174 -41590984 + L1PA7 LINE L1 2081 6469 0 361 258 76 0 chr3 176447199 176447331 -41589827 - L1MEd LINE L1 -5286 833 692 245 253 36 24 chr3 176447920 176448003 -41589155 - L1MEd LINE L1 -5984 135 52 487 262 0 16 chr3 176448582 176448708 -41588450 + L2 LINE L2 3189 3312 -1 2293 120 0 0 chr3 176448938 176449247 -41587911 - AluSg SINE Alu 0 310 2 1458 242 40 69 chr3 176449253 176449835 -41587323 - MER74B LTR ERVL 0 622 58 1661 127 96 8 chr3 176450421 176450706 -41586452 + AluSx SINE Alu 1 308 0 576 303 0 0 chr3 176450707 176450839 -41586319 - MER5A DNA MER1_type -56 133 2 238 169 203 0 chr3 176451527 176451586 -41585572 - MIR SINE MIR -6 256 186 568 181 0 28 chr3 176451784 176451966 -41585192 + (TTAAG)n Simple_repeat Simple_repeat 3 179 0 304 266 108 51 chr3 176452118 176452332 -41584826 + L1ME4a LINE L1 5777 6002 -119 23 33 0 0 chr3 176452860 176452890 -41584268 + AT_rich Low_complexity Low_complexity 1 30 0 228 111 19 19 chr3 176453005 176453059 -41584099 - LTR66 LTR ERVL -154 456 403 713 56 80 0 chr3 176453059 176453221 -41583937 + (TA)n Simple_repeat Simple_repeat 1 175 0 2343 87 0 0 chr3 176453221 176453510 -41583648 - AluSc SINE Alu -20 289 1 505 295 187 42 chr3 176453541 176453948 -41583210 - L2 LINE L2 -4 3309 2844 967 220 77 18 chr3 176454031 176454448 -41582710 + MER92B LTR ERV1 11 552 -2 1805 145 82 17 chr3 176454716 176455068 -41582090 + THE1C LTR MaLR 1 375 0 894 189 6 12 chr3 176455738 176455902 -41581256 + FRAM SINE Alu 1 163 -3 1717 274 57 65 chr3 176456059 176456749 -41580409 - MER115 DNA AcHobo -9 684 1 2160 117 3 0 chr3 176457599 176457889 -41579269 - AluSx SINE Alu -21 291 1 225 0 0 0 chr3 176459115 176459140 -41578018 + (T)n Simple_repeat Simple_repeat 1 25 0 336 268 71 36 chr3 176459803 176459915 -41577243 + L2 LINE L2 3154 3269 -3 180 0 0 0 chr3 176459938 176459958 -41577200 + (TTG)n Simple_repeat Simple_repeat 2 21 0 324 278 35 35 chr3 176460860 176461004 -41576154 - MIR SINE MIR -32 230 87 811 187 62 48 chr3 176461020 176461229 -41575929 - MER20 DNA MER1_type -6 213 2 374 265 10 20 chr3 176461430 176461532 -41575626 - MIR SINE MIR 0 262 162 972 186 41 6 chr3 176462659 176462831 -41574327 + MER45A DNA AcHobo 1 178 0 180 97 0 0 chr3 176462839 176462870 -41574288 + (CCCA)n Simple_repeat Simple_repeat 3 33 0 307 292 90 7 chr3 176464495 176464639 -41572519 - MIR SINE MIR -18 244 89 2502 52 0 26 chr3 176465342 176465651 -41571507 - AluY SINE Alu -10 301 1 478 237 16 81 chr3 176465792 176465978 -41571180 - MER112 DNA MER1_type -73 187 14 427 271 149 32 chr3 176466633 176466854 -41570304 - MIR SINE MIR 0 262 16 470 248 188 0 chr3 176467454 176467571 -41569587 - MER91C DNA MER1_type 0 140 2 243 0 0 0 chr3 176468165 176468192 -41568966 + (CA)n Simple_repeat Simple_repeat 2 28 0 524 265 88 7 chr3 176468555 176468702 -41568456 - MER5B DNA MER1_type 0 178 20 885 190 24 11 chr3 176468731 176468918 -41568240 - MER5A DNA MER1_type -3 175 2 223 322 34 48 chr3 176468953 176469099 -41568059 + L2 LINE L2 2828 2971 -301 465 133 36 0 chr3 176470117 176470200 -41566958 - MIR SINE MIR -59 203 118 292 280 97 0 chr3 176470907 176471000 -41566158 + MIR SINE MIR 2 103 -159 2704 129 65 57 chr3 176471338 176471879 -41565279 - LTR10A LTR ERV1 -64 545 1 212 196 0 22 chr3 176472289 176472335 -41564823 + L2 LINE L2 3255 3299 -14 351 297 63 0 chr3 176472674 176472785 -41564373 + L2 LINE L2 3136 3253 -19 303 140 0 0 chr3 176472790 176472840 -41564318 + (TGGA)n Simple_repeat Simple_repeat 3 52 0 328 290 32 0 chr3 176473143 176473267 -41563891 + (TA)n Simple_repeat Simple_repeat 2 129 0 247 228 53 0 chr3 176474393 176474450 -41562708 - L2 LINE L2 -58 3255 3196 211 244 73 24 chr3 176474609 176474691 -41562467 - MIR SINE MIR -6 256 171 1229 266 75 33 chr3 176474772 176475227 -41561931 - L2 LINE L2 -775 2539 2066 212 245 20 0 chr3 176475277 176475326 -41561832 - MER5A DNA MER1_type -4 185 136 394 227 62 22 chr3 176476826 176476960 -41560198 + MIR SINE MIR 16 151 -58 539 237 122 0 chr3 176477009 176477165 -41559993 - MIR SINE MIR -6 256 82 512 306 68 9 chr3 176477347 176477566 -41559592 + MIR SINE MIR 20 251 -11 251 301 116 64 chr3 176477661 176477824 -41559334 + L2 LINE L2 2892 3045 -227 2144 130 0 3 chr3 176477824 176478132 -41559026 - AluSg SINE Alu -3 307 1 251 301 116 64 chr3 176478132 176478313 -41558845 + L2 LINE L2 3045 3254 -18 339 25 0 0 chr3 176478319 176478359 -41558799 + (CAT)n Simple_repeat Simple_repeat 2 41 0 395 273 152 0 chr3 176478603 176478702 -41558456 - MIR SINE MIR -148 114 1 207 0 0 0 chr3 176478914 176478937 -41558221 + (T)n Simple_repeat Simple_repeat 1 23 0 377 280 30 0 chr3 176479251 176479351 -41557807 - MIR3 SINE MIR 0 208 106 1712 204 26 16 chr3 176479780 176479972 -41557186 - L1MA4 LINE L1 -31 6269 6080 5362 59 1 1 chr3 176479972 176480650 -41556508 - L1PA8 LINE L1 0 6172 5495 1712 204 26 16 chr3 176480650 176480901 -41556257 - L1MA4 LINE L1 -220 6080 5818 190 310 119 50 chr3 176480968 176481229 -41555929 + L2 LINE L2 2942 3220 -93 1790 123 0 37 chr3 176481624 176481892 -41555266 - AluSc SINE Alu -17 292 35 623 318 69 4 chr3 176482611 176482844 -41554314 - MIR SINE MIR -1 261 14 516 294 69 40 chr3 176482974 176483277 -41553881 - L1ME LINE L1 -307 5814 5503 22 0 0 0 chr3 176483303 176483325 -41553833 + AT_rich Low_complexity Low_complexity 1 22 0 257 222 48 16 chr3 176483591 176483654 -41553504 + L3 LINE CR1 1506 1570 -7 340 215 0 0 chr3 176484773 176484852 -41552306 - MLT1J LTR MaLR -9 502 424 725 328 36 4 chr3 176485198 176485445 -41551713 - MIR SINE MIR -2 260 6 271 316 75 56 chr3 176486422 176486798 -41550360 + L2 LINE L2 1920 2302 -1012 572 290 16 5 chr3 176487157 176487350 -41549808 - LTR16B LTR ERVL -65 399 205 404 312 7 0 chr3 176487640 176487778 -41549380 + LTR16A1 LTR ERVL 319 457 0 281 346 116 35 chr3 176487827 176488145 -41549013 + L2 LINE L2 2348 2691 -623 592 309 144 26 chr3 176489377 176489723 -41547435 + L3 LINE CR1 737 1123 -454 206 315 90 22 chr3 176491210 176491388 -41545770 + L3 LINE CR1 1166 1355 -222 341 291 105 43 chr3 176491527 176491761 -41545397 - MIR SINE MIR -14 248 4 282 252 126 39 chr3 176493835 176493938 -41543220 - MIR SINE MIR -77 185 74 23 54 0 0 chr3 176494652 176494689 -41542469 + AT_rich Low_complexity Low_complexity 1 37 0 207 250 29 0 chr3 176494909 176494977 -41542181 + (TA)n Simple_repeat Simple_repeat 2 71 0 339 242 55 22 chr3 176495458 176495549 -41541609 - MIR3 SINE MIR -7 201 108 477 0 0 0 chr3 176496318 176496371 -41540787 + (TG)n Simple_repeat Simple_repeat 1 53 0 2172 127 3 0 chr3 176497395 176497702 -41539456 + AluSx SINE Alu 1 308 -4 278 244 102 74 chr3 176499452 176499776 -41537382 - HAL1 LINE L1 -89 2418 2086 1154 257 28 50 chr3 176499948 176500453 -41536705 - HAL1 LINE L1 -768 1739 1246 3856 174 42 17 chr3 176501901 176502744 -41534414 - L1MB4 LINE L1 -2 6178 5315 3116 58 8 99 chr3 176502865 176503368 -41533790 - L1PB1 LINE L1 0 6151 5695 665 337 131 17 chr3 176503627 176503971 -41533187 + L2 LINE L2 2889 3271 -1 418 231 92 8 chr3 176504027 176504157 -41533001 - MIR SINE MIR -51 211 71 627 148 0 17 chr3 176504434 176504549 -41532609 - AluJb SINE Alu 0 312 200 189 0 0 0 chr3 176504579 176504600 -41532558 + (TG)n Simple_repeat Simple_repeat 2 22 0 229 262 47 0 chr3 176505206 176505313 -41531845 - L1MCc LINE L1 -4943 1480 1369 735 225 75 39 chr3 176506114 176506356 -41530802 + MIR SINE MIR 14 256 -6 22 0 0 0 chr3 176506426 176506448 -41530710 + AT_rich Low_complexity Low_complexity 1 22 0 2308 67 9 0 chr3 176506543 176506858 -41530300 + L1PA8 LINE L1 5835 6152 -20 730 75 0 30 chr3 176507441 176507575 -41529583 + (TCTA)n Simple_repeat Simple_repeat 4 133 0 464 207 112 0 chr3 176507958 176508074 -41529084 + MER63 DNA MER1_type 1 755 -81 450 314 109 18 chr3 176508315 176508535 -41528623 - MIR SINE MIR -19 243 4 355 239 0 77 chr3 176509417 176509534 -41527624 + MIR SINE MIR 119 226 -36 21 0 0 0 chr3 176509551 176509572 -41527586 + AT_rich Low_complexity Low_complexity 1 21 0 1992 110 0 0 chr3 176510019 176510283 -41526875 - AluSx SINE Alu -10 302 39 316 310 149 29 chr3 176510406 176510687 -41526471 - L1ME4a LINE L1 -135 5986 5672 2250 87 3 3 chr3 176510729 176511028 -41526130 - AluY SINE Alu -12 299 1 2174 134 0 0 chr3 176511699 176512005 -41525153 + AluSq SINE Alu 1 306 -7 379 255 41 0 chr3 176515479 176515577 -41521581 + MIR SINE MIR 91 192 -70 2882 176 145 7 chr3 176515768 176516450 -41520708 - LTR48 LTR ERV1 0 787 12 387 295 9 0 chr3 176516463 176516568 -41520590 + MLT1I LTR MaLR 4 109 -300 946 222 30 0 chr3 176516613 176516816 -41520342 + MER3 DNA MER1_type 1 209 0 726 258 0 32 chr3 176516830 176517020 -41520138 + MLT1I LTR MaLR 226 409 0 1504 96 0 15 chr3 176517264 176517462 -41519696 + AluSx SINE Alu 1 195 -117 208 324 27 0 chr3 176517887 176517961 -41519197 + L2 LINE L2 2427 2502 -812 305 263 256 32 chr3 176518021 176518177 -41518981 + MER91A DNA MER1_type 5 195 -1 527 313 100 59 chr3 176518199 176518856 -41518302 + L2 LINE L2 2594 3271 -1 812 264 86 14 chr3 176519501 176519721 -41517437 + MIR SINE MIR 25 260 -2 2137 98 0 0 chr3 176520918 176521195 -41515963 - AluSq SINE Alu -30 283 7 27 29 0 0 chr3 176521662 176521696 -41515462 + AT_rich Low_complexity Low_complexity 1 34 0 2708 64 0 0 chr3 176521977 176522334 -41514824 - L1PA8 LINE L1 -21 6151 5795 263 273 32 84 chr3 176522539 176522693 -41514465 + MIR SINE MIR 58 203 -59 679 270 44 33 chr3 176523455 176523684 -41513474 + MIR SINE MIR 10 238 -24 333 240 67 0 chr3 176523853 176523957 -41513201 - MLT1J LTR MaLR -23 488 378 427 293 61 24 chr3 176524011 176524249 -41512909 - MLT1J LTR MaLR -239 215 3 253 369 133 65 chr3 176524280 176524665 -41512493 + L2 LINE L2 2826 3236 -36 361 232 122 4 chr3 176524861 176524996 -41512162 - MIR SINE MIR -64 144 35 432 296 50 15 chr3 176526731 176526914 -41510244 + LTR33 LTR ERVL 40 205 -318 370 236 87 0 chr3 176526980 176527141 -41510017 + LTR33 LTR ERVL 326 500 -21 480 282 19 13 chr3 176528085 176528241 -41508917 + MIR3 SINE MIR 42 198 -10 407 277 15 23 chr3 176529073 176529203 -41507955 + L2 LINE L2 3142 3270 -2 1591 168 115 25 chr3 176529563 176529955 -41507203 + MSTC LTR MaLR 1 427 -1 4314 184 33 24 chr3 176530037 176530889 -41506269 + MER21B LTR ERV1 3 862 -1 2343 110 0 0 chr3 176530928 176531236 -41505922 - AluSg SINE Alu -2 308 1 7722 235 77 42 chr3 176531282 176533939 -41503219 + L1M2 LINE L1 10 2795 -4053 3043 96 35 7 chr3 176533939 176534399 -41502759 + L1PB1 LINE L1 5676 6148 -3 7722 235 77 42 chr3 176534399 176534831 -41502327 + L1M2 LINE L1 2795 3210 -3638 706 119 75 8 chr3 176534833 176534967 -41502191 + MER57B LTR ERV1 292 434 0 3055 127 12 16 chr3 176534967 176535480 -41501678 + THE1C-int LTR MaLR 1069 1579 -1 1906 155 38 22 chr3 176535480 176535847 -41501311 + THE1C LTR MaLR 3 375 0 2319 163 35 15 chr3 176535847 176536453 -41500705 + L1MA4A LINE L1 5615 6290 -10 7085 57 12 0 chr3 176536707 176537777 -41499381 - L1PA5 LINE L1 -1 6153 5079 198 0 0 0 chr3 176539939 176539961 -41497197 + (TTC)n Simple_repeat Simple_repeat 1 22 0 251 291 26 51 chr3 176540119 176540236 -41496922 - MIR SINE MIR -124 138 25 510 326 52 9 chr3 176540471 176540699 -41496459 - MIR SINE MIR -2 260 21 252 299 91 39 chr3 176540964 176541218 -41495940 - L2 LINE L2 -189 3083 2817 201 74 0 0 chr3 176541648 176541675 -41495483 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 4956 69 0 0 chr3 176541728 176542367 -41494791 - L1PA8 LINE L1 -10 6162 5524 812 76 17 0 chr3 176542367 176542486 -41494672 + L1P LINE L1 4119 4239 -1907 1932 138 0 0 chr3 176543069 176543345 -41493813 - AluSx SINE Alu -8 304 29 350 138 454 0 chr3 176543587 176543717 -41493441 + MER53 DNA DNA 1 189 0 10886 41 6 0 chr3 176544071 176546196 -41490962 + L1PA5 LINE L1 4019 6153 -1 536 279 6 38 chr3 176546429 176546587 -41490571 + MER5B DNA MER1_type 2 154 -24 303 28 0 0 chr3 176547676 176547712 -41489446 + (TCCA)n Simple_repeat Simple_repeat 1 36 0 579 296 58 5 chr3 176547883 176548072 -41489086 + MIR SINE MIR 5 203 -59 1111 256 85 55 chr3 176548360 176548829 -41488329 - L2 LINE L2 0 3313 2831 526 141 345 21 chr3 176548863 176549005 -41488153 - MER5A DNA MER1_type 0 189 2 297 0 0 0 chr3 176550845 176550878 -41486280 + (TG)n Simple_repeat Simple_repeat 2 34 0 1129 117 39 15 chr3 176550911 176551116 -41486042 - Tigger1 DNA MER2_type 0 2418 2209 368 42 0 0 chr3 176551153 176551201 -41485957 - Tigger1 DNA MER2_type -187 2231 2184 1620 186 43 10 chr3 176551203 176551504 -41485654 + AluJb SINE Alu 1 311 -1 225 146 0 0 chr3 176551808 176551856 -41485302 - L1MD2 LINE L1 -2 6357 6310 * 502 153 82 100 chr3 176551852 176552022 -41485136 - L1M4 LINE L1 -1339 4807 4641 233 329 0 0 chr3 176552089 176552159 -41484999 - L1MDa LINE L1 -5975 565 496 1726 183 135 3 chr3 176552167 176552544 -41484614 - L1MDa LINE L1 -6096 444 18 1862 154 104 89 chr3 176554678 176555170 -41481988 + MLT1D LTR MaLR 5 503 -2 1029 206 62 8 chr3 176555171 176555476 -41481682 - MER33 DNA MER1_type -14 310 1 302 312 87 40 chr3 176555518 176555691 -41481467 + MER5A DNA MER1_type 9 189 0 284 314 21 14 chr3 176556642 176556782 -41480376 + L1ME LINE L1 8 148 -5971 369 247 12 0 chr3 176556932 176557017 -41480141 + L1ME LINE L1 296 381 -5738 256 305 115 15 chr3 176557053 176557384 -41479774 + HAL1 LINE L1 1230 1593 -914 1035 140 17 0 chr3 176557409 176557588 -41479570 - L1MA5 LINE L1 -4 6296 6115 1872 176 7 3 chr3 176557931 176558232 -41478926 + AluJb SINE Alu 1 302 -10 33731 83 22 9 chr3 176558431 176564495 -41472663 + L1PA6 LINE L1 12 6151 -3 539 276 47 75 chr3 176564514 176565027 -41472131 + L1ME LINE L1 2194 2694 -3435 1553 278 99 59 chr3 176565120 176566844 -41470314 + L1ME LINE L1 3862 5651 -494 1182 279 95 34 chr3 176566867 176567340 -41469818 + L2 LINE L2 2812 3313 0 269 214 36 36 chr3 176567392 176567476 -41469682 - MIR SINE MIR -95 167 84 1818 223 126 40 chr3 176568618 176568990 -41468168 + L1ME3A LINE L1 5567 6002 -168 2242 109 3 0 chr3 176568990 176569284 -41467874 + AluSp SINE Alu 1 295 -18 1818 223 126 40 chr3 176569284 176569459 -41467699 + L1ME3A LINE L1 6002 6161 -9 1651 193 16 0 chr3 176569813 176570119 -41467039 - AluJo SINE Alu -1 311 1 24 0 0 0 chr3 176570127 176570151 -41467007 + AT_rich Low_complexity Low_complexity 1 24 0 259 241 35 9 chr3 176570151 176570267 -41466891 + (TA)n Simple_repeat Simple_repeat 2 120 0 285 163 33 120 chr3 176573879 176573971 -41463187 + L1ME2 LINE L1 5963 6046 -118 384 125 18 0 chr3 176574676 176574732 -41462426 - FLAM SINE Alu -11 122 66 728 197 0 0 chr3 176576010 176576132 -41461026 - FLAM_C SINE Alu -11 122 1 2093 82 0 0 chr3 176576446 176576703 -41460455 + AluY SINE Alu 38 294 -17 33 0 0 0 chr3 176576705 176576738 -41460420 + AT_rich Low_complexity Low_complexity 1 33 0 7468 26 1 0 chr3 176576738 176577615 -41459543 - L1PA3 LINE L1 -3 6152 5275 1579 77 5 0 chr3 176577587 176577795 -41459363 - L1PA7 LINE L1 0 6154 5946 * 1269 281 73 19 chr3 176578841 176579264 -41457894 - LTR33A LTR ERVL -77 446 1 2113 97 23 0 chr3 176579498 176579620 -41457538 + AluY SINE Alu 3 121 -190 648 26 0 0 chr3 176579620 176579698 -41457460 + (CA)n Simple_repeat Simple_repeat 2 79 0 2113 97 23 0 chr3 176579698 176579874 -41457284 + AluY SINE Alu 121 308 -3 742 186 19 39 chr3 176579881 176580037 -41457121 + FRAM SINE Alu 1 146 -30 23 68 0 0 chr3 176580500 176580544 -41456614 + AT_rich Low_complexity Low_complexity 1 44 0 2200 121 0 22 chr3 176581320 176581633 -41455525 + AluSx SINE Alu 1 306 -6 22 35 0 0 chr3 176582703 176582732 -41454426 + AT_rich Low_complexity Low_complexity 1 29 0 494 281 90 28 chr3 176583010 176583409 -41453749 + L1M4 LINE L1 2197 2620 -3526 273 204 51 0 chr3 176583605 176583703 -41453455 + L1M4 LINE L1 3133 3235 -2911 3198 261 50 14 chr3 176583726 176583931 -41453227 + L1ME3A LINE L1 28 224 -5846 1558 194 35 53 chr3 176583931 176584328 -41452830 - MLT1B LTR MaLR 0 390 1 3198 261 50 14 chr3 176584328 176585147 -41452011 + L1ME3A LINE L1 224 1089 -4981 446 277 90 86 chr3 176585216 176585483 -41451675 + L1ME3A LINE L1 3230 3497 -2583 979 271 81 44 chr3 176585491 176585777 -41451381 + L1ME3A LINE L1 3590 3864 -2216 6586 78 13 5 chr3 176585777 176587247 -41449911 + L1PA8 LINE L1 4675 6157 -15 979 271 81 44 chr3 176587247 176587577 -41449581 + L1ME3A LINE L1 3864 4229 -1851 399 286 63 17 chr3 176587590 176587828 -41449330 + L1ME3A LINE L1 4269 4517 -1563 379 142 71 12 chr3 176587891 176588060 -41449098 + (TA)n Simple_repeat Simple_repeat 2 180 0 3106 82 0 2 chr3 176588081 176588482 -41448676 - MLT2A1 LTR ERVL -44 400 1 1390 263 96 46 chr3 176588499 176589759 -41447399 + L1ME3A LINE L1 4750 6075 -29 5821 27 0 11 chr3 176589782 176590479 -41446679 + L1PA3 LINE L1 5464 6152 -3 429 233 0 0 chr3 176590547 176590663 -41446495 + (TA)n Simple_repeat Simple_repeat 1 116 0 1224 223 68 27 chr3 176591099 176591467 -41445691 + L1ME1 LINE L1 5778 6160 -6 206 174 0 22 chr3 176591611 176591657 -41445501 + A-rich Low_complexity Low_complexity 5 49 0 300 310 0 10 chr3 176593558 176593658 -41443500 + GA-rich Low_complexity Low_complexity 3 101 0 1561 186 200 0 chr3 176596602 176596962 -41440196 + MER63B DNA MER1_type 1 432 -4 902 171 33 67 chr3 176597525 176597735 -41439423 + MER3 DNA MER1_type 3 205 -4 678 292 5 14 chr3 176597746 176597962 -41439196 + MER58C DNA MER1_type 1 214 -1 1132 251 93 32 chr3 176598925 176599332 -41437826 + MLT1J1 LTR MaLR 6 437 -9 4647 125 21 4 chr3 176603470 176604220 -41432938 + L1MA4 LINE L1 5535 6297 -3 1819 138 38 7 chr3 176607220 176607510 -41429648 + AluJb SINE Alu 1 299 -13 204 40 0 0 chr3 176608278 176608303 -41428855 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 932 251 62 98 chr3 176608304 176608864 -41428294 - L2 LINE L2 -14 3299 2474 228 143 0 0 chr3 176609987 176610029 -41427129 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 248 213 0 0 chr3 176610101 176610148 -41427010 + (CA)n Simple_repeat Simple_repeat 1 47 0 1230 219 35 47 chr3 176610260 176610749 -41426409 + L1MC5 LINE L1 7453 7935 -26 2195 108 3 0 chr3 176610793 176611099 -41426059 - AluSc SINE Alu -2 307 1 711 236 77 0 chr3 176612074 176612269 -41424889 - MER102b DNA MER1_type -5 336 127 575 260 56 63 chr3 176612553 176612838 -41424320 + L1ME LINE L1 5500 5782 -339 386 337 35 42 chr3 176613313 176613574 -41423584 + L2 LINE L2 2905 3163 -109 21 0 0 0 chr3 176613574 176613595 -41423563 + AT_rich Low_complexity Low_complexity 1 21 0 192 152 0 0 chr3 176613783 176613816 -41423342 + (CATA)n Simple_repeat Simple_repeat 4 36 0 21 36 0 0 chr3 176614066 176614094 -41423064 + AT_rich Low_complexity Low_complexity 1 28 0 211 260 65 26 chr3 176614313 176614390 -41422768 - MIR SINE MIR -113 149 70 371 281 62 43 chr3 176615536 176615746 -41421412 - L1MC4a LINE L1 -1901 5907 5694 1131 210 91 119 chr3 176615758 176616471 -41420687 - Charlie7 DNA MER1_type -422 2190 1498 313 278 141 39 chr3 176616477 176616732 -41420426 - Charlie7 DNA MER1_type -2257 355 75 465 274 107 32 chr3 176617658 176617910 -41419248 + L2 LINE L2 3043 3313 0 21 36 0 0 chr3 176618131 176618159 -41418999 + AT_rich Low_complexity Low_complexity 1 28 0 261 264 149 0 chr3 176618161 176618248 -41418910 - MIR SINE MIR -112 150 51 1420 267 133 37 chr3 176618350 176618976 -41418182 - L2 LINE L2 -450 2864 2179 202 302 153 29 chr3 176620071 176620207 -41416951 + MIR SINE MIR 2 152 -64 231 233 23 85 chr3 176620631 176620702 -41416456 - L1ME LINE L1 -290 5880 5819 2749 100 40 5 chr3 176620702 176621122 -41416036 + L1MA1 LINE L1 5868 6302 0 231 233 23 85 chr3 176621122 176621179 -41415979 - L1ME LINE L1 -351 5819 5760 303 198 79 87 chr3 176621228 176621354 -41415804 - L1ME LINE L1 -526 5658 5534 364 192 72 10 chr3 176621359 176621492 -41415666 - L1ME LINE L1 -686 5468 5321 214 208 0 38 chr3 176621492 176621545 -41415613 + CT-rich Low_complexity Low_complexity 1 51 0 765 288 109 14 chr3 176621555 176622052 -41415106 - L1ME LINE L1 -838 5308 4765 42564 55 3 0 chr3 176622070 176628208 -41408950 + L1PA5 LINE L1 1 6148 -6 507 276 31 10 chr3 176628221 176628417 -41408741 - L1ME LINE L1 -1386 4760 4561 216 221 191 0 chr3 176628448 176628516 -41408642 - L2 LINE L2 0 3313 3233 621 320 60 64 chr3 176628537 176628974 -41408184 + L2 LINE L2 2838 3272 0 194 384 158 0 chr3 176629723 176629869 -41407289 + L2 LINE L2 3096 3264 -8 1790 42 0 30 chr3 176630963 176631199 -41405959 + L1PA4 LINE L1 5924 6152 -3 266 268 191 22 chr3 176631711 176631886 -41405272 + MIR SINE MIR 20 218 -44 2358 80 3 3 chr3 176632955 176633256 -41403902 - AluY SINE Alu -10 301 1 375 307 37 49 chr3 176633566 176633729 -41403429 + MIR3 SINE MIR 2 162 -46 420 314 57 13 chr3 176633820 176633979 -41403179 + MIR SINE MIR 97 262 0 351 173 0 17 chr3 176634012 176634103 -41403055 - MER5A DNA MER1_type 0 189 37 300 188 0 0 chr3 176634237 176634301 -41402857 + HsTC2 DNA Tc2 236 299 -1599 * 933 278 61 30 chr3 176634283 176634690 -41402468 + HsTC2 DNA Tc2 468 887 -1011 331 286 103 0 chr3 176634891 176635017 -41402141 - L1ME LINE L1 -330 5791 5653 196 291 51 13 chr3 176635859 176635938 -41401220 + MIR SINE MIR 59 140 -122 188 243 14 0 chr3 176635961 176636035 -41401123 + CT-rich Low_complexity Low_complexity 4 78 0 426 255 130 42 chr3 176636114 176636306 -41400852 + MIR SINE MIR 53 261 -1 43719 43 3 1 chr3 176636426 176642565 -41394593 - L1PA4 LINE L1 0 6155 5 198 333 58 11 chr3 176643077 176643164 -41393994 + L2 LINE L2 3223 3313 0 1077 170 29 4 chr3 176643354 176643595 -41393563 + L1MA4A LINE L1 6057 6303 0 33 25 0 0 chr3 176643783 176643823 -41393335 + AT_rich Low_complexity Low_complexity 1 40 0 23 54 0 0 chr3 176643930 176643967 -41393191 + AT_rich Low_complexity Low_complexity 1 37 0 234 246 120 42 chr3 176644023 176644165 -41392993 - L1ME LINE L1 -388 5733 5581 2494 104 48 2 chr3 176645208 176645603 -41391555 - L1MA3 LINE L1 -6 6299 5887 224 336 93 0 chr3 176645603 176645710 -41391448 - L2 LINE L2 -9 3263 3147 405 283 44 13 chr3 176646688 176646847 -41390311 + MLT1J LTR MaLR 7 170 -341 2477 150 54 13 chr3 176647192 176647658 -41389500 + L1MA9 LINE L1 5792 6276 -36 464 302 222 0 chr3 176647892 176648081 -41389077 - MIR SINE MIR -12 250 20 342 192 62 116 chr3 176648324 176648470 -41388688 - MIR SINE MIR -103 159 22 275 269 0 0 chr3 176649879 176649946 -41387212 + (CATA)n Simple_repeat Simple_repeat 2 68 0 189 311 54 14 chr3 176651549 176651623 -41385535 + MIR SINE MIR 180 256 -6 772 163 81 0 chr3 176652098 176652270 -41384888 + MER53 DNA DNA 2 187 -2 686 217 14 7 chr3 176652388 176652526 -41384632 - MER5A DNA MER1_type -3 186 48 1958 99 102 16 chr3 176652526 176652897 -41384261 + LTR7 LTR ERV1 1 450 0 410 368 18 18 chr3 176653638 176653861 -41383297 + MIR SINE MIR 28 250 -12 186 149 106 0 chr3 176653945 176653992 -41383166 + MIR3 SINE MIR 108 159 -49 237 165 211 18 chr3 176654384 176654493 -41382665 - L1ME4a LINE L1 -1 6120 5991 5989 167 42 9 chr3 176654630 176655466 -41381692 + L1MA7 LINE L1 4144 4951 -1340 2351 103 7 0 chr3 176655466 176655768 -41381390 + AluSx SINE Alu 1 304 -8 5989 167 42 9 chr3 176655768 176657014 -41380144 + L1MA7 LINE L1 4951 6291 0 3843 163 38 7 chr3 176658090 176658806 -41378352 - L1MB7 LINE L1 -16 6168 5431 313 213 26 21 chr3 176658974 176659075 -41378083 + Charlie8 DNA MER1_type 245 2416 -1 285 128 0 0 chr3 176659967 176660014 -41377144 + (T)n Simple_repeat Simple_repeat 1 47 0 419 248 69 19 chr3 176661229 176661388 -41375770 + MIR SINE MIR 69 238 -24 336 324 29 0 chr3 176661450 176661586 -41375572 - L1ME4a LINE L1 -188 5933 5794 22 35 0 0 chr3 176662140 176662169 -41374989 + AT_rich Low_complexity Low_complexity 1 29 0 1125 231 110 33 chr3 176662568 176662958 -41374200 - L1ME1 LINE L1 -2 6164 5745 346 303 80 11 chr3 176663457 176663807 -41373351 - L1M4 LINE L1 -2055 4091 3718 211 277 139 20 chr3 176664186 176664287 -41372871 - MIR SINE MIR -65 197 85 2163 112 0 0 chr3 176664624 176664911 -41372247 + AluY SINE Alu 1 287 -24 340 0 83 0 chr3 176664911 176664971 -41372187 + (TA)n Simple_repeat Simple_repeat 2 66 0 210 136 45 0 chr3 176665048 176665092 -41372066 + T-rich Low_complexity Low_complexity 1 46 0 218 250 77 0 chr3 176665107 176665159 -41371999 + MIR3 SINE MIR 105 160 -48 333 264 39 83 chr3 176666245 176666484 -41370674 + L1ME LINE L1 5588 5824 -297 346 320 166 0 chr3 176667150 176667331 -41369827 - MIR SINE MIR -3 259 49 412 164 0 0 chr3 176667351 176667424 -41369734 - AluJ/FRAM SINE Alu -8 304 232 196 204 19 56 chr3 176667447 176667501 -41369657 - MIR SINE MIR -210 52 1 183 80 0 0 chr3 176668295 176668320 -41368838 + (TC)n Simple_repeat Simple_repeat 2 26 0 381 86 0 0 chr3 176668326 176668384 -41368774 + (CA)n Simple_repeat Simple_repeat 1 58 0 631 258 23 26 chr3 176669582 176669870 -41367288 + L1MC4a LINE L1 5614 5817 -304 399 296 35 0 chr3 176670098 176670213 -41366945 + MIR SINE MIR 5 123 -139 211 150 25 62 chr3 176670503 176670583 -41366575 + (TA)n Simple_repeat Simple_repeat 2 78 0 303 299 6 54 chr3 176670700 176670867 -41366291 - L1ME4a LINE L1 -1989 5819 5661 481 322 31 18 chr3 176671009 176671236 -41365922 - L2 LINE L2 -530 2784 2555 2231 135 3 0 chr3 176671451 176671762 -41365396 - AluSx SINE Alu 0 312 1 884 81 0 0 chr3 176672004 176672115 -41365043 + AluSg/x SINE Alu 188 298 -11 346 272 33 0 chr3 176672926 176673018 -41364140 + MER81 DNA DNA 1 95 -19 321 247 12 25 chr3 176673034 176673115 -41364043 + MER81 DNA DNA 35 114 0 274 364 49 33 chr3 176673116 176673300 -41363858 + L2 LINE L2 2902 3088 -184 1986 132 26 11 chr3 176673651 176673999 -41363159 - MLT1B LTR MaLR -1 389 37 292 250 69 0 chr3 176674215 176674287 -41362871 + L2 LINE L2 3236 3312 -1 1684 176 66 0 chr3 176675717 176676035 -41361123 + MER44D DNA MER2_type 1 609 0 251 323 0 0 chr3 176678852 176678917 -41358241 + MIR SINE MIR 41 105 -103 734 250 0 11 chr3 176679393 176679573 -41357585 + MER5B DNA MER1_type 1 178 0 278 283 46 106 chr3 176679995 176680232 -41356926 - MIR SINE MIR -4 258 36 257 268 175 9 chr3 176680367 176680479 -41356679 - MIR SINE MIR -65 143 48 5408 69 0 1 chr3 176680864 176681558 -41355600 + L1PA8 LINE L1 5480 6172 0 2526 63 3 0 chr3 176682583 176682885 -41354273 + AluY SINE Alu 1 303 -8 351 228 18 9 chr3 176683705 176683819 -41353339 + CT-rich Low_complexity Low_complexity 3 117 0 2138 108 4 0 chr3 176685204 176685482 -41351676 - AluSc SINE Alu -14 295 17 264 252 95 61 chr3 176685511 176685658 -41351500 - MIR SINE MIR -34 228 77 265 246 29 0 chr3 176686044 176686113 -41351045 + MER117 DNA MER1_type 74 144 -53 359 248 75 30 chr3 176686436 176686569 -41350589 - MIR SINE MIR -71 191 53 280 242 76 0 chr3 176688526 176688592 -41348566 - L2 LINE L2 -1 3312 3242 462 274 107 32 chr3 176689039 176689291 -41347867 + L2 LINE L2 3043 3313 0 21 36 0 0 chr3 176689512 176689540 -41347618 + AT_rich Low_complexity Low_complexity 1 28 0 253 264 149 0 chr3 176689542 176689629 -41347529 - MIR SINE MIR -112 150 51 861 311 95 46 chr3 176689731 176690255 -41346903 - L2 LINE L2 -450 2864 2315 11071 24 0 1 chr3 176690364 176691773 -41345385 + L1P1 LINE L1 4034 5440 -715 2324 180 47 2 chr3 176691887 176692376 -41344782 - L1P LINE L1 -5624 522 12 1811 174 7 7 chr3 176692579 176692877 -41344281 - AluJb SINE Alu -14 298 1 814 190 17 0 chr3 176693221 176693400 -41343758 + L1MA5 LINE L1 6115 6296 -4 793 228 48 71 chr3 176693808 176693989 -41343169 - HsTC2a DNA Tc2 -1460 264 89 2215 122 0 0 chr3 176693989 176694284 -41342874 - AluSq SINE Alu -18 295 1 793 228 48 71 chr3 176694284 176694370 -41342788 - HsTC2a DNA Tc2 -1635 89 3 383 323 57 6 chr3 176694464 176694622 -41342536 - MIR SINE MIR -16 246 81 571 277 85 11 chr3 176695266 176695526 -41341632 + L1ME3A LINE L1 5856 6134 -36 199 205 0 0 chr3 176696634 176696673 -41340485 - L3 LINE CR1 -289 1288 1250 484 263 0 133 chr3 176696684 176696962 -41340196 - L2 LINE L2 -43 3270 3030 3752 91 0 4 chr3 176697861 176698397 -41338761 - L1P LINE L1 -5608 538 5 197 333 58 11 chr3 176698909 176698996 -41338162 + L2 LINE L2 3223 3313 0 918 193 26 9 chr3 176699186 176699414 -41337744 + L1MA4A LINE L1 6057 6288 -15 200 205 0 0 chr3 176699600 176699639 -41337519 + (CATATA)n Simple_repeat Simple_repeat 3 41 0 1101 155 5 0 chr3 176699750 176699944 -41337214 - AluY SINE Alu -116 195 1 4988 92 0 4 chr3 176700970 176701666 -41335492 - L1PA8 LINE L1 0 6172 5480 257 268 175 9 chr3 176702051 176702163 -41334995 + MIR SINE MIR 48 180 -65 265 295 83 41 chr3 176702327 176702535 -41334623 + MIR SINE MIR 45 258 -4 2076 232 58 17 chr3 176703024 176703731 -41333427 - L1 LINE L1 -1267 4879 4144 351 226 183 7 chr3 176703840 176703977 -41333181 + L1ME4a LINE L1 5960 6120 -1 187 149 106 0 chr3 176704369 176704416 -41332742 - MIR3 SINE MIR -49 159 108 418 368 18 18 chr3 176704500 176704723 -41332435 - MIR SINE MIR -12 250 28 1849 99 102 16 chr3 176705464 176705835 -41331323 - LTR7 LTR ERV1 0 450 1 690 217 14 7 chr3 176705835 176705973 -41331185 + MER5A DNA MER1_type 48 186 -3 752 163 81 0 chr3 176706091 176706263 -41330895 - MER53 DNA DNA -2 187 2 267 226 0 0 chr3 176706587 176706640 -41330518 - FRAM/FAM SINE Alu -104 71 19 186 372 0 13 chr3 176706712 176706790 -41330368 - L2 LINE L2 -400 2913 2837 2363 87 0 0 chr3 176708181 176708469 -41328689 - AluSc SINE Alu -21 288 1 421 274 83 20 chr3 176708674 176708878 -41328280 - LTR16C LTR ERVL -3 488 272 4282 97 2 2 chr3 176709597 176710529 -41326629 + L1PA3 LINE L1 5048 5979 -176 720 212 0 0 chr3 176710629 176710780 -41326378 - AluSq/x SINE Alu -161 151 1 250 317 69 21 chr3 176710974 176711119 -41326039 - MIR SINE MIR -30 232 81 205 298 12 60 chr3 176711298 176711382 -41325776 - MIR SINE MIR -114 148 69 466 304 16 63 chr3 176711888 176712191 -41324967 + L1MC4a LINE L1 5578 5866 -1942 367 291 148 22 chr3 176712398 176712669 -41324489 - MLT1H LTR MaLR -230 319 15 873 304 137 25 chr3 176713795 176714267 -41322891 - L2 LINE L2 -2 3311 2791 406 243 56 112 chr3 176714454 176714567 -41322591 - MIR SINE MIR 0 262 144 2872 111 18 7 chr3 176714567 176715017 -41322141 + L1PA14 LINE L1 5706 6160 -1 406 243 56 112 chr3 176715017 176715154 -41322004 - MIR SINE MIR -118 144 26 1063 238 43 31 chr3 176715305 176715628 -41321530 + MER1B DNA MER1_type 6 332 -7 242 240 69 40 chr3 176716153 176716328 -41320830 + (TATTG)n Simple_repeat Simple_repeat 1 180 0 * 275 234 70 41 chr3 176716206 176716377 -41320781 + (TACTG)n Simple_repeat Simple_repeat 5 180 0 183 129 0 0 chr3 176716519 176716550 -41320608 + (TG)n Simple_repeat Simple_repeat 2 32 0 198 0 0 0 chr3 176716714 176716736 -41320422 + (TTA)n Simple_repeat Simple_repeat 3 24 0 7473 28 0 0 chr3 176716736 176717824 -41319334 - L1PA3 LINE L1 -18 6137 5048 545 238 82 19 chr3 176718541 176718747 -41318411 + LTR16C LTR ERVL 272 490 -1 2363 87 0 0 chr3 176718950 176719238 -41317920 + AluSc SINE Alu 1 288 -21 186 372 0 13 chr3 176720629 176720707 -41316451 + L2 LINE L2 2838 2914 -400 576 194 0 0 chr3 176720780 176720912 -41316246 + FLAM_A SINE Alu 20 151 0 211 221 59 88 chr3 176721176 176721244 -41315914 + MIR SINE MIR 10 75 -187 414 273 175 7 chr3 176721289 176721443 -41315715 + MIR SINE MIR 77 256 -6 6266 109 7 21 chr3 176722225 176722999 -41314159 + L1PA11 LINE L1 4697 5432 -742 2110 129 16 49 chr3 176722999 176723387 -41313771 + THE1C LTR MaLR 1 375 0 6266 109 7 21 chr3 176723387 176724099 -41313059 + L1PA11 LINE L1 5432 6153 -21 882 215 101 9 chr3 176724514 176724733 -41312425 - MIR SINE MIR -21 241 3 305 371 77 53 chr3 176725011 176725388 -41311770 - L2 LINE L2 -17 3255 2870 473 312 112 15 chr3 176726120 176726325 -41310833 - MIR SINE MIR -15 247 23 279 322 148 0 chr3 176727340 176727489 -41309669 - MIR SINE MIR -57 205 35 220 271 17 17 chr3 176727625 176727684 -41309474 - MIR3 SINE MIR -23 185 127 246 250 90 42 chr3 176727922 176728066 -41309092 + MLT1L LTR MaLR 244 394 -221 270 315 24 8 chr3 176728118 176728245 -41308913 + MLT1L LTR MaLR 485 613 -2 429 293 17 0 chr3 176728328 176728444 -41308714 + L2 LINE L2 3186 3303 -10 345 329 72 13 chr3 176728466 176728618 -41308540 - L2 LINE L2 -10 3262 3102 865 236 45 32 chr3 176728787 176729033 -41308125 - MIR SINE MIR -3 259 11 1726 229 87 25 chr3 176730015 176730213 -41306945 + MLT1F1 LTR MaLR 2 186 -381 321 26 0 0 chr3 176730213 176730251 -41306907 + (TC)n Simple_repeat Simple_repeat 1 38 0 * 486 0 0 0 chr3 176730250 176730304 -41306854 + (CA)n Simple_repeat Simple_repeat 1 54 0 1726 229 87 25 chr3 176730251 176730620 -41306538 + MLT1F1 LTR MaLR 186 548 -19 1581 123 0 0 chr3 176730767 176730978 -41306180 - AluSc SINE Alu -14 295 85 198 91 0 0 chr3 176731430 176731463 -41305695 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 41532 39 6 4 chr3 176733378 176739520 -41297638 - L1PA3 LINE L1 0 6155 1 1517 235 58 22 chr3 176739606 176740103 -41297055 + L1ME3A LINE L1 5620 6134 -36 199 205 0 0 chr3 176741209 176741248 -41295910 - L3 LINE CR1 -289 1288 1250 480 263 0 133 chr3 176741259 176741537 -41295621 - L2 LINE L2 -43 3270 3030 793 228 48 71 chr3 176742584 176742765 -41294393 - HsTC2a DNA Tc2 -1460 264 89 2215 122 0 0 chr3 176742765 176743060 -41294098 - AluSq SINE Alu -18 295 1 793 228 48 71 chr3 176743060 176743146 -41294012 - HsTC2a DNA Tc2 -1635 89 3 383 323 57 6 chr3 176743240 176743398 -41293760 - MIR SINE MIR -16 246 81 204 319 35 78 chr3 176743576 176743717 -41293441 - MIR SINE MIR -114 148 14 511 301 17 60 chr3 176744164 176744466 -41292692 + L1MC4a LINE L1 5578 5866 -1942 367 291 148 22 chr3 176744673 176744944 -41292214 - MLT1H LTR MaLR -230 319 15 873 304 137 25 chr3 176746071 176746543 -41290615 - L2 LINE L2 -2 3311 2791 283 188 116 0 chr3 176746730 176746799 -41290359 - MIR SINE MIR 0 262 186 22 35 0 0 chr3 176746800 176746829 -41290329 + AT_rich Low_complexity Low_complexity 1 29 0 1639 188 27 12 chr3 176747471 176747800 -41289358 + MER1B DNA MER1_type 6 339 0 234 280 75 9 chr3 176748065 176748172 -41288986 + MIR SINE MIR 92 205 -57 332 343 0 0 chr3 176748714 176748819 -41288339 - MIR3 SINE MIR -6 202 98 431 182 50 20 chr3 176748897 176748996 -41288162 + L2 LINE L2 3207 3308 -5 2257 147 25 5 chr3 176749216 176749584 -41287574 + THE1C LTR MaLR 1 375 0 341 252 93 0 chr3 176750053 176750160 -41286998 - MER94 DNA DNA 0 134 18 724 294 69 9 chr3 176750237 176750468 -41286690 + MIR SINE MIR 8 252 -10 21134 157 19 9 chr3 176751038 176754155 -41283003 - L1MA3 LINE L1 0 7724 4640 2162 76 0 0 chr3 176754155 176754439 -41282719 - AluY SINE Alu 0 304 21 21134 157 19 9 chr3 176754439 176756566 -41280592 - L1MA3 LINE L1 -3084 4640 2536 2178 115 6 19 chr3 176756566 176756880 -41280278 - AluSg SINE Alu 0 310 1 21134 157 19 9 chr3 176756880 176759211 -41277947 - L1MA3 LINE L1 -5188 2536 64 7450 38 28 0 chr3 176759539 176760569 -41276589 - L1PA4 LINE L1 -8 6147 5110 1719 28 5 0 chr3 176760569 176760785 -41276373 + L1PA4 LINE L1 4900 5116 -1030 434 356 28 6 chr3 176760834 176761014 -41276144 + MIR SINE MIR 20 203 -59 541 273 13 47 chr3 176761404 176761611 -41275547 - MIR SINE MIR -12 250 52 249 263 277 0 chr3 176761926 176762063 -41275095 + MIR SINE MIR 71 245 -17 297 303 49 81 chr3 176762395 176762518 -41274640 + MER5A DNA MER1_type 10 127 -62 1702 175 0 4 chr3 176762518 176762781 -41274377 + AluJo SINE Alu 21 282 -30 297 303 49 81 chr3 176762781 176762842 -41274316 + MER5A DNA MER1_type 127 188 -1 1456 254 22 64 chr3 176762980 176763483 -41273675 - L2 LINE L2 -11 3302 2821 743 315 72 50 chr3 176763561 176764076 -41273082 + L2 LINE L2 2281 2806 -508 34955 41 1 3 chr3 176764123 176770165 -41266993 + L1PA3 LINE L1 1 6155 0 444 351 28 18 chr3 176770530 176770730 -41266428 + MIR3 SINE MIR 1 207 -1 32 26 0 0 chr3 176771815 176771854 -41265304 + AT_rich Low_complexity Low_complexity 1 39 0 444 196 20 166 chr3 176772252 176772655 -41264503 - LTR37A LTR ERV1 -9 417 74 398 313 71 8 chr3 176772849 176773089 -41264069 - L1ME LINE L1 -382 5739 5485 25 0 0 0 chr3 176773168 176773193 -41263965 + AT_rich Low_complexity Low_complexity 1 25 0 183 129 0 0 chr3 176773675 176773706 -41263452 + (TG)n Simple_repeat Simple_repeat 2 32 0 198 0 0 0 chr3 176773870 176773892 -41263266 + (TTA)n Simple_repeat Simple_repeat 3 24 0 8249 32 0 14 chr3 176773892 176775658 -41261500 - L1PA3 LINE L1 -18 6137 4385 4531 56 14 0 chr3 176775658 176776224 -41260934 + L1PA7 LINE L1 5574 6149 -5 1849 167 13 19 chr3 176776344 176776655 -41260503 - AluSx SINE Alu -1 311 3 8460 33 0 5 chr3 176776867 176777949 -41259209 + L1P LINE L1 3198 4274 -1872 207 179 0 0 chr3 176778135 176778174 -41258984 + (CA)n Simple_repeat Simple_repeat 1 39 0 480 310 70 28 chr3 176778294 176778981 -41258177 - L1ME LINE L1 -1130 5016 4301 496 248 24 114 chr3 176779395 176779641 -41257517 + MER58A DNA MER1_type 1 224 0 974 87 7 0 chr3 176780523 176780672 -41256486 - L1P LINE L1 -1344 4802 4653 612 87 33 0 chr3 176780772 176780864 -41256294 + L1PA3 LINE L1 6058 6152 -3 366 272 7 52 chr3 176780884 176781020 -41256138 + MLT1I LTR MaLR 92 221 -188 759 198 35 91 chr3 176781022 176781077 -41256081 - L2 LINE L2 -660 2654 2597 1892 153 33 10 chr3 176781077 176781378 -41255780 + AluSx SINE Alu 1 308 -4 759 198 35 91 chr3 176781378 176781554 -41255604 - L2 LINE L2 -717 2597 2436 598 299 98 29 chr3 176782107 176782351 -41254807 + MIR SINE MIR 2 262 0 2277 113 0 3 chr3 176783452 176783762 -41253396 + AluSx SINE Alu 1 309 -3 2095 66 41 7 chr3 176787214 176787516 -41249642 - AluSc SINE Alu 0 311 1 417 351 64 64 chr3 176787536 176787829 -41249329 + L2 LINE L2 2896 3191 -81 1288 202 6 28 chr3 176787829 176788156 -41249002 - MER33 DNA MER1_type 0 324 5 417 351 64 64 chr3 176788156 176788235 -41248923 + L2 LINE L2 3190 3268 -4 184 293 67 13 chr3 176788220 176788295 -41248863 - MIR SINE MIR -121 141 63 * 559 198 31 52 chr3 176788692 176788884 -41248274 - Zaphod DNA AcHobo -8 4023 3836 3099 169 46 36 chr3 176788939 176789654 -41247504 + L1MA7 LINE L1 5542 6263 -28 22 35 0 0 chr3 176789918 176789947 -41247211 + AT_rich Low_complexity Low_complexity 1 29 0 1164 223 19 72 chr3 176790010 176790369 -41246789 - MER58B DNA MER1_type 0 341 2 241 177 143 19 chr3 176790370 176790579 -41246579 - Zaphod DNA AcHobo -3043 988 754 1763 163 48 9 chr3 176791039 176791370 -41245788 - MER2 DNA MER2_type 0 344 1 228 395 34 8 chr3 176791654 176791773 -41245385 + L2 LINE L2 3134 3255 -17 962 255 186 41 chr3 176791781 176791943 -41245215 - L2 LINE L2 0 3313 3176 2243 215 47 52 chr3 176791943 176792500 -41244658 - MLT2B3 LTR ERVL 0 554 1 962 255 186 41 chr3 176792500 176792883 -41244275 - L2 LINE L2 -137 3176 2691 274 358 8 45 chr3 176792898 176793032 -41244126 - MIR3 SINE MIR -70 138 10 29 0 0 0 chr3 176793691 176793720 -41243438 + AT_rich Low_complexity Low_complexity 1 29 0 1936 79 4 23 chr3 176795561 176795826 -41241332 - AluSp SINE Alu -15 298 39 410 297 55 24 chr3 176796410 176796575 -41240583 - MIR SINE MIR -90 172 3 2382 167 9 32 chr3 176796577 176797013 -41240145 + MSTB LTR MaLR 1 426 0 402 171 40 0 chr3 176797399 176797475 -41239683 - L2 LINE L2 -40 3273 3195 265 214 0 18 chr3 176798430 176798486 -41238672 - L2 LINE L2 -4 3309 3255 2603 265 110 31 chr3 176800693 176801976 -41235182 + L2 LINE L2 1915 3289 -24 903 239 28 28 chr3 176802420 176802704 -41234454 + L1ME1 LINE L1 5880 6163 -3 303 337 45 40 chr3 176803412 176803614 -41233544 - MIR SINE MIR -10 252 50 2369 86 3 3 chr3 176803750 176804054 -41233104 + AluSc SINE Alu 2 305 -4 231 279 117 54 chr3 176804521 176804632 -41232526 + L2 LINE L2 2860 2977 -295 236 291 47 55 chr3 176805120 176805247 -41231911 + L2 LINE L2 3188 3313 0 1091 8 0 0 chr3 176806755 176806879 -41230279 - L1PA2 LINE L1 -2 6153 6030 1195 21 0 0 chr3 176806879 176807022 -41230136 + L1P1 LINE L1 5539 5681 -474 200 194 0 0 chr3 176807757 176807793 -41229365 + (TG)n Simple_repeat Simple_repeat 2 37 0 352 250 61 110 chr3 177009107 177009271 -41027887 + MIR SINE MIR 8 138 -70 9381 216 38 19 chr3 177011795 177013847 -41023311 - L1M1 LINE L1 -5376 2189 95 192 40 0 0 chr3 177013847 177013872 -41023286 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 9381 216 38 19 chr3 177013872 177013953 -41023205 - L1M1 LINE L1 -7470 95 17 982 228 65 71 chr3 177014065 177014389 -41022769 - MLT2D LTR ERVL -11 403 82 26 0 0 0 chr3 177016166 177016192 -41020966 + AT_rich Low_complexity Low_complexity 1 26 0 653 210 35 0 chr3 177016621 177016764 -41020394 + MLT1A1 LTR MaLR 1 148 -217 1200 221 54 110 chr3 177017961 177018496 -41018662 - MLT1D LTR MaLR 0 505 1 31 26 0 0 chr3 177019098 177019136 -41018022 + AT_rich Low_complexity Low_complexity 1 38 0 21 57 0 0 chr3 177019210 177019245 -41017913 + AT_rich Low_complexity Low_complexity 1 35 0 285 98 0 0 chr3 177020778 177020819 -41016339 + (CA)n Simple_repeat Simple_repeat 2 42 0 8832 124 77 21 chr3 177021932 177023537 -41013621 - pTR5 LTR ERV1 0 2438 743 29 47 0 0 chr3 177025434 177025477 -41011681 + AT_rich Low_complexity Low_complexity 1 43 0 364 330 9 0 chr3 177025660 177025775 -41011383 + L2 LINE L2 3193 3308 -5 220 347 27 27 chr3 177026456 177026606 -41010552 - L2 LINE L2 -1 3312 3163 210 204 19 74 chr3 177027575 177027629 -41009529 - L2 LINE L2 -13 3300 3250 21 36 0 0 chr3 177027904 177027932 -41009226 + AT_rich Low_complexity Low_complexity 1 28 0 278 364 32 7 chr3 177028318 177028472 -41008686 - MIR SINE MIR -94 168 11 1294 146 25 104 chr3 177028543 177028589 -41008569 - L1MA3 LINE L1 -8 6297 6249 197 33 33 0 chr3 177028589 177028619 -41008539 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 1294 146 25 104 chr3 177028619 177028637 -41008521 - L1MA3 LINE L1 -56 6249 6231 1293 31 0 6 chr3 177028637 177028831 -41008327 - L1PA2 LINE L1 0 6155 5998 1294 146 25 104 chr3 177028831 177028972 -41008186 - L1MA3 LINE L1 -74 6231 6128 3870 51 38 0 chr3 177028972 177029444 -41007714 - LTR2B LTR ERV1 0 490 1 1294 146 25 104 chr3 177029444 177029592 -41007566 - L1MA3 LINE L1 -177 6128 5970 6424 113 184 81 chr3 177029594 177031132 -41006026 - pTR5 LTR ERV1 0 2438 743 381 264 64 9 chr3 177031163 177031273 -41005885 + L2 LINE L2 3197 3312 -1 33 73 0 0 chr3 177031538 177031606 -41005552 + AT_rich Low_complexity Low_complexity 1 68 0 2906 94 25 25 chr3 177032517 177032965 -41004193 + LTR7 LTR ERV1 1 448 -2 13988 107 24 32 chr3 177032968 177035866 -41001292 + HERVH LTR ERV1 1 2995 -4718 2905 133 8 0 chr3 177035845 177036327 -41000831 + HERVH LTR ERV1 3140 3625 -4088 * 1315 246 112 9 chr3 177037556 177037986 -40999172 + MER34 LTR ERV1 27 500 -42 306 269 64 35 chr3 177038058 177038199 -40998959 + L1MCa LINE L1 1775 1919 -4507 1705 141 28 83 chr3 177038407 177038734 -40998424 + AluSc SINE Alu 1 309 0 24 0 0 0 chr3 177038850 177038874 -40998284 + AT_rich Low_complexity Low_complexity 1 24 0 1962 117 37 0 chr3 177039046 177039166 -40997992 + AluSg SINE Alu 1 115 -195 326 23 23 0 chr3 177039166 177039209 -40997949 + (CAA)n Simple_repeat Simple_repeat 2 45 0 1962 117 37 0 chr3 177039209 177039386 -40997772 + AluSg SINE Alu 115 309 -1 317 242 80 17 chr3 177040132 177040266 -40996892 + MLT1J2 LTR MaLR 58 202 -207 2051 119 3 13 chr3 177041078 177041388 -40995770 - AluSx SINE Alu 0 312 6 34 84 0 0 chr3 177041408 177041491 -40995667 + AT_rich Low_complexity Low_complexity 1 83 0 2270 100 3 13 chr3 177041940 177042250 -40994908 - AluSp SINE Alu -6 307 1 22 0 0 0 chr3 177042339 177042361 -40994797 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr3 177042850 177042878 -40994280 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr3 177043139 177043176 -40993982 + AT_rich Low_complexity Low_complexity 1 37 0 1938 226 33 66 chr3 177043659 177044310 -40992848 - MLT1E3 LTR MaLR 0 586 3 905 193 0 44 chr3 177044395 177044576 -40992582 - FRAM SINE Alu -6 170 1 2491 62 0 0 chr3 177044593 177044884 -40992274 + AluY SINE Alu 6 296 -15 446 290 98 42 chr3 177045092 177045260 -40991898 + LTR33 LTR ERVL 1 185 -336 2455 158 29 2 chr3 177045260 177045671 -40991487 - MSTB LTR MaLR -4 422 1 446 290 98 42 chr3 177045671 177045716 -40991442 + LTR33 LTR ERVL 185 226 -295 300 285 100 50 chr3 177045747 177045947 -40991211 + LTR33 LTR ERVL 292 501 -20 268 118 119 0 chr3 177046022 177046094 -40991064 - MLT2A2 LTR ERVL 0 444 390 260 259 18 18 chr3 177046094 177046206 -40990952 + (TA)n Simple_repeat Simple_repeat 2 113 0 751 98 66 0 chr3 177046214 177046336 -40990822 - MLT2A2 LTR ERVL -40 413 284 23406 91 5 7 chr3 177046336 177046363 -40990795 - HERVL-A2 LTR ERVL -2354 3300 3274 2282 107 3 0 chr3 177046363 177046671 -40990487 + AluY SINE Alu 1 309 -2 23406 91 5 7 chr3 177046671 177049948 -40987210 - HERVL-A2 LTR ERVL -2380 3274 2 327 107 0 18 chr3 177049949 177050005 -40987153 - MLT2A2 LTR ERVL 0 453 399 260 207 6 34 chr3 177050058 177050237 -40986921 + (TA)n Simple_repeat Simple_repeat 2 175 0 2717 105 37 0 chr3 177050267 177050668 -40986490 - MLT2A2 LTR ERVL -37 416 1 4756 128 264 85 chr3 177050766 177052207 -40984951 + pTR5 LTR ERV1 740 2438 0 32 43 0 0 chr3 177052761 177052807 -40984351 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr3 177054204 177054227 -40982931 + AT_rich Low_complexity Low_complexity 1 23 0 2564 169 34 8 chr3 177054478 177054952 -40982206 - MER66B LTR ERV1 0 486 1 325 289 23 55 chr3 177055075 177055203 -40981955 + L2 LINE L2 3190 3313 0 25 0 0 0 chr3 177055405 177055430 -40981728 + AT_rich Low_complexity Low_complexity 1 25 0 1942 120 3 31 chr3 177055652 177055944 -40981214 + AluSg SINE Alu 17 300 -10 41 36 0 0 chr3 177056778 177056833 -40980325 + AT_rich Low_complexity Low_complexity 1 55 0 2207 130 3 46 chr3 177057350 177057719 -40979439 + THE1A LTR MaLR 1 353 -2 11180 108 13 1 chr3 177057721 177059282 -40977876 + THE1A-int LTR MaLR 1 1580 0 2218 91 33 58 chr3 177059282 177059646 -40977512 + THE1A LTR MaLR 1 355 0 183 42 0 0 chr3 177060695 177060719 -40976439 + (TTG)n Simple_repeat Simple_repeat 1 24 0 1266 173 134 32 chr3 177060967 177061244 -40975914 + AluJo SINE Alu 1 305 -7 1590 152 3 79 chr3 177061793 177062151 -40975007 - AluSg SINE Alu 0 335 1 745 266 122 30 chr3 177062920 177063454 -40973704 + L1MC4 LINE L1 7280 7862 -180 353 280 130 38 chr3 177063797 177064058 -40973100 + L1ME LINE L1 1206 1490 -5144 379 251 108 72 chr3 177064063 177064535 -40972623 + L1ME LINE L1 1436 2091 -4673 22 0 0 0 chr3 177064561 177064583 -40972575 + AT_rich Low_complexity Low_complexity 1 22 0 1197 237 63 84 chr3 177066173 177066724 -40970434 + MER34 LTR ERV1 1 521 -21 208 187 53 40 chr3 177067097 177067172 -40969986 + A-rich Low_complexity Low_complexity 3 78 0 192 40 0 0 chr3 177068277 177068302 -40968856 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 26 30 0 0 chr3 177068693 177068726 -40968432 + AT_rich Low_complexity Low_complexity 1 33 0 1285 214 50 8 chr3 177068800 177069062 -40968096 - AluJo SINE Alu -30 282 10 459 324 65 41 chr3 177069399 177069692 -40967466 - MER110-int LTR ERV1 -3916 731 432 2055 106 7 3 chr3 177070754 177071037 -40966121 + AluSc SINE Alu 9 292 -17 2387 138 3 11 chr3 177071470 177071841 -40965317 + THE1C LTR MaLR 1 368 -7 1704 273 80 24 chr3 177072251 177072792 -40964366 + MER77 LTR ERV1 50 601 -4 2376 172 16 9 chr3 177073074 177073515 -40963643 - MER31A LTR ERV1 -9 476 33 264 30 0 0 chr3 177073527 177073560 -40963598 + (TG)n Simple_repeat Simple_repeat 2 34 0 22 0 0 0 chr3 177073824 177073846 -40963312 + AT_rich Low_complexity Low_complexity 1 22 0 324 282 40 79 chr3 177074038 177074240 -40962918 + LTR68 LTR ERV1 243 436 -304 1249 150 17 9 chr3 177074562 177074795 -40962363 - L1PA14 LINE L1 -780 5366 5132 * 4936 97 9 23 chr3 177074791 177075543 -40961615 + L1PA14 LINE L1 5368 6109 -52 515 191 73 83 chr3 177075543 177075747 -40961411 - LTR8A LTR ERV1 -181 546 345 1519 183 71 9 chr3 177075748 177076071 -40961087 + MER61A LTR ERV1 1 343 0 2086 190 99 41 chr3 177076139 177076766 -40960392 + HUERS-P3b LTR ERV1 81 777 -4440 284 93 0 0 chr3 177076759 177076802 -40960356 + HUERS-P3b LTR ERV1 1320 1362 -3855 * 21458 115 15 13 chr3 177076801 177077597 -40959561 + HUERS-P3b LTR ERV1 1006 1800 -3417 4985 109 34 17 chr3 177077597 177078364 -40958794 - LTR17 LTR ERV1 0 780 1 21458 115 15 13 chr3 177078364 177080961 -40956197 + HUERS-P3b LTR ERV1 1800 4825 -392 1833 107 22 0 chr3 177080940 177081212 -40955946 + HUERS-P3b LTR ERV1 4936 5213 -4 * 1953 133 30 12 chr3 177081216 177081553 -40955605 + MER61A LTR ERV1 1 343 0 889 218 77 121 chr3 177081553 177081916 -40955242 - LTR8 LTR ERV1 -380 347 1 384 226 78 0 chr3 177081939 177082093 -40955065 - L1MDa LINE L1 -3890 2650 2525 * 6040 256 63 39 chr3 177082086 177084121 -40953037 - L1MDa LINE L1 -4437 2103 21 25 51 0 0 chr3 177086358 177086397 -40950761 + AT_rich Low_complexity Low_complexity 1 39 0 395 221 11 0 chr3 177086744 177086839 -40950319 - L1MD3 LINE L1 -8 7987 7892 2280 88 6 22 chr3 177088128 177088446 -40948712 + AluSq SINE Alu 1 313 0 673 252 65 14 chr3 177088649 177088863 -40948295 - MER93a LTR ERV1 -117 285 61 286 342 57 6 chr3 177088962 177089120 -40948038 - MIR SINE MIR -94 168 3 1004 325 61 11 chr3 177090765 177091292 -40945866 - MLT1H1 LTR MaLR -2 553 1 350 309 137 23 chr3 177091292 177091462 -40945696 - L1MC/D LINE L1 -2078 5730 5541 295 313 12 0 chr3 177091665 177091748 -40945410 + MIR3 SINE MIR 124 207 -1 21 0 0 0 chr3 177092525 177092546 -40944612 + AT_rich Low_complexity Low_complexity 1 21 0 261 313 95 58 chr3 177093405 177093631 -40943527 - MIR3 SINE MIR -12 250 2 * 292 371 88 37 chr3 177093610 177093882 -40943276 - L2 LINE L2 0 3272 2987 24 53 0 0 chr3 177094087 177094125 -40943033 + AT_rich Low_complexity Low_complexity 1 38 0 304 277 18 27 chr3 177094157 177094269 -40942889 - L1ME4a LINE L1 -72 6049 5939 31 44 0 0 chr3 177094744 177094789 -40942369 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr3 177094922 177094945 -40942213 + AT_rich Low_complexity Low_complexity 1 23 0 2889 296 141 67 chr3 177094964 177095785 -40941373 + L2 LINE L2 309 1067 -2247 297 0 0 0 chr3 177095785 177095818 -40941340 + (CA)n Simple_repeat Simple_repeat 2 34 0 2568 124 3 0 chr3 177095818 177096189 -40940969 - THE1C LTR MaLR -3 372 1 2889 296 141 67 chr3 177096189 177097842 -40939316 + L2 LINE L2 1066 2968 -346 631 227 44 39 chr3 177097917 177098373 -40938785 - L1MB7 LINE L1 -62 6122 5567 1060 201 51 8 chr3 177098388 177098642 -40938516 + L1M4 LINE L1 5264 5528 -646 668 236 0 45 chr3 177098810 177098857 -40938301 - MLT2C1 LTR ERVL 0 397 349 330 67 0 0 chr3 177098857 177098902 -40938256 + (CA)n Simple_repeat Simple_repeat 1 45 0 668 236 0 45 chr3 177098902 177099032 -40938126 - MLT2C1 LTR ERVL -48 349 228 480 248 16 8 chr3 177099035 177099160 -40937998 - MLT2C2 LTR ERVL -338 126 1 396 233 100 67 chr3 177099178 177099328 -40937830 + L2 LINE L2 3158 3312 -1 284 178 14 0 chr3 177100210 177100283 -40936875 + (TA)n Simple_repeat Simple_repeat 1 74 0 22 35 0 0 chr3 177100812 177100841 -40936317 + AT_rich Low_complexity Low_complexity 1 29 0 192 228 0 0 chr3 177100899 177100956 -40936202 + (TA)n Simple_repeat Simple_repeat 1 57 0 287 366 27 18 chr3 177101579 177101691 -40935467 - MER5B DNA MER1_type -64 114 2 25 51 0 0 chr3 177101816 177101855 -40935303 + AT_rich Low_complexity Low_complexity 1 39 0 336 319 0 26 chr3 177102186 177102302 -40934856 - MER5B DNA MER1_type -50 128 16 1816 128 0 0 chr3 177102855 177103138 -40934020 - AluSc SINE Alu 0 309 36 36 0 0 0 chr3 177103951 177103987 -40933171 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr3 177104048 177104070 -40933088 + AT_rich Low_complexity Low_complexity 1 22 0 351 103 17 0 chr3 177104854 177104912 -40932246 - MSTA LTR MaLR -367 61 3 22 70 0 0 chr3 177104960 177105003 -40932155 + AT_rich Low_complexity Low_complexity 1 43 0 1850 166 26 20 chr3 177105066 177105410 -40931748 - MER7A DNA MER2_type -1 345 2 1936 105 7 0 chr3 177106267 177106562 -40930596 + HERVH LTR ERV1 3697 3993 -3720 3803 142 78 2 chr3 177106564 177107179 -40929979 + HERVH LTR ERV1 4488 5149 -2564 1356 109 0 67 chr3 177107176 177107415 -40929743 + HERVH LTR ERV1 5597 5819 -1894 * 2334 86 59 13 chr3 177107415 177107788 -40929370 + HERVH LTR ERV1 7324 7713 0 2360 82 143 22 chr3 177107788 177108188 -40928970 + LTR7 LTR ERV1 1 448 -2 258 260 47 71 chr3 177109439 177109462 -40927696 - MIR SINE MIR -119 143 121 1474 218 60 8 chr3 177109462 177109815 -40927343 + MLT1A2 LTR MaLR 4 374 0 258 260 47 71 chr3 177109815 177109918 -40927240 - MIR SINE MIR -141 121 20 2640 96 98 0 chr3 177112748 177113156 -40924002 - LTR7 LTR ERV1 -2 448 1 1377 117 12 17 chr3 177113156 177113493 -40923665 - HERVH LTR ERV1 0 7713 7322 1239 105 100 0 chr3 177113491 177113691 -40923467 - HERVH LTR ERV1 -1894 5819 5600 * 600 240 0 0 chr3 177113692 177113817 -40923341 - HERVH LTR ERV1 -2564 5149 5025 * 1256 121 0 32 chr3 177113800 177113990 -40923168 - HERVH LTR ERV1 -2878 4835 4652 * 20594 104 19 15 chr3 177113977 177117165 -40919993 - HERVH LTR ERV1 -3916 3797 596 644 38 0 0 chr3 177117300 177117380 -40919778 - L1PA7 LINE L1 -1 6153 6074 21 89 0 0 chr3 177118076 177118132 -40919026 + AT_rich Low_complexity Low_complexity 1 56 0 295 312 93 4 chr3 177118656 177118925 -40918233 + L1ME2 LINE L1 4224 4516 -1630 2483 274 41 24 chr3 177119058 177120122 -40917036 + L1ME2 LINE L1 5063 6149 -15 310 254 74 62 chr3 177120151 177120395 -40916763 + L1MEd LINE L1 971 1217 -4902 1412 73 0 16 chr3 177120409 177120600 -40916558 - L1PA8A LINE L1 -585 5546 5359 3363 115 27 2 chr3 177120950 177121302 -40915856 - L1PB1 LINE L1 -1 6150 5779 180 111 0 0 chr3 177121302 177121329 -40915829 + (TG)n Simple_repeat Simple_repeat 2 28 0 3363 115 27 2 chr3 177121329 177121490 -40915668 - L1PB1 LINE L1 -372 5779 5624 2998 106 18 4 chr3 177121490 177121933 -40915225 - L1PBa LINE L1 -5014 1849 1398 743 243 109 70 chr3 177121965 177122377 -40914781 + LTR7 LTR ERV1 23 450 0 521 138 58 0 chr3 177122377 177122464 -40914694 - L1PBa LINE L1 -5461 1402 1311 2380 124 49 5 chr3 177122475 177122863 -40914295 - L1PBa LINE L1 -5709 1154 750 419 259 72 62 chr3 177122849 177123042 -40914116 + L1M4 LINE L1 3968 4162 -1984 * 986 167 23 79 chr3 177123474 177123689 -40913469 + AluJo SINE Alu 3 205 -107 290 304 10 49 chr3 177124382 177124484 -40912674 - L2 LINE L2 -1 3271 3174 225 329 73 0 chr3 177125003 177125085 -40912073 - L2 LINE L2 -37 3276 3189 349 270 23 86 chr3 177125252 177125426 -40911732 - MIR SINE MIR -47 215 53 240 263 0 0 chr3 177125640 177125720 -40911438 + T-rich Low_complexity Low_complexity 1 80 0 1185 235 117 69 chr3 177125960 177126582 -40910576 + MLT1E1 LTR MaLR 1 652 -2 29 28 0 0 chr3 177128577 177128613 -40908545 + AT_rich Low_complexity Low_complexity 1 36 0 196 365 16 0 chr3 177128647 177128710 -40908448 + MIR SINE MIR 28 91 -117 26 30 0 0 chr3 177129044 177129077 -40908081 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr3 177129467 177129496 -40907662 + AT_rich Low_complexity Low_complexity 1 29 0 738 160 0 8 chr3 177129522 177129641 -40907517 - AluJb SINE Alu -190 122 5 205 220 17 85 chr3 177129848 177129907 -40907251 - MIR SINE MIR -144 118 64 288 154 0 0 chr3 177130206 177130258 -40906900 + (CA)n Simple_repeat Simple_repeat 2 53 0 256 98 0 39 chr3 177131342 177131393 -40905765 + (TTTC)n Simple_repeat Simple_repeat 4 52 0 1758 145 0 7 chr3 177131396 177131665 -40905493 - AluSx SINE Alu -45 267 1 347 305 179 7 chr3 177131702 177131853 -40905305 + MER5B DNA MER1_type 2 178 0 272 306 37 37 chr3 177131903 177132037 -40905121 + L2 LINE L2 3180 3313 0 480 313 53 60 chr3 177132996 177133428 -40903730 - Charlie8 DNA MER1_type -1949 468 40 25 0 0 0 chr3 177133488 177133513 -40903645 + AT_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr3 177134112 177134133 -40903025 + (CA)n Simple_repeat Simple_repeat 2 22 0 235 231 0 15 chr3 177134469 177134534 -40902624 + CT-rich Low_complexity Low_complexity 3 66 0 13260 183 27 18 chr3 177134567 177135633 -40901525 - L1MA3 LINE L1 0 7724 6669 1870 140 63 26 chr3 177135633 177135982 -40901176 - THE1B LTR MaLR -2 362 1 13260 183 27 18 chr3 177135982 177136864 -40900294 - L1MA3 LINE L1 -1055 6669 5796 1551 197 7 3 chr3 177136864 177137159 -40899999 - AluJo SINE Alu -16 296 1 13260 183 27 18 chr3 177137159 177139492 -40897666 - L1MA3 LINE L1 -1928 5796 3393 315 0 0 0 chr3 177139492 177139527 -40897631 + (TG)n Simple_repeat Simple_repeat 2 36 0 13260 183 27 18 chr3 177139527 177139969 -40897189 - L1MA3 LINE L1 -4331 3393 2956 22 35 0 0 chr3 177140472 177140501 -40896657 + AT_rich Low_complexity Low_complexity 1 29 0 1813 128 11 0 chr3 177140541 177140807 -40896351 + AluSx SINE Alu 17 285 -27 23 33 0 0 chr3 177141095 177141125 -40896033 + AT_rich Low_complexity Low_complexity 1 30 0 212 292 79 34 chr3 177142039 177142128 -40895030 - MIR SINE MIR 0 262 170 3491 144 44 68 chr3 177142253 177142959 -40894199 + LTR8 LTR ERV1 1 689 -2 1776 228 55 28 chr3 177143229 177143734 -40893424 + L1MD3 LINE L1 7459 7977 -18 471 18 0 0 chr3 177143738 177143794 -40893364 + (TA)n Simple_repeat Simple_repeat 2 57 0 1635 172 52 0 chr3 177143794 177144085 -40893073 - AluJb SINE Alu -6 306 1 29 0 0 0 chr3 177144092 177144121 -40893037 + AT_rich Low_complexity Low_complexity 1 29 0 226 300 14 0 chr3 177144177 177144247 -40892911 + L1MEd LINE L1 684 754 -5451 712 175 0 0 chr3 177144293 177144419 -40892739 + FLAM_C SINE Alu 9 134 -9 31 0 0 0 chr3 177144419 177144450 -40892708 + AT_rich Low_complexity Low_complexity 1 31 0 547 315 82 67 chr3 177144607 177145465 -40891693 + L1MEd LINE L1 895 1820 -4576 1422 209 43 0 chr3 177145506 177145783 -40891375 + AluJo SINE Alu 1 289 -23 22 35 0 0 chr3 177145822 177145851 -40891307 + AT_rich Low_complexity Low_complexity 1 29 0 300 296 108 20 chr3 177145952 177146547 -40890611 + L1MEd LINE L1 2038 2668 -3547 21 0 0 0 chr3 177147053 177147074 -40890084 + AT_rich Low_complexity Low_complexity 1 21 0 373 358 19 19 chr3 177147509 177147769 -40889389 - L1ME LINE L1 -415 5747 5488 2157 57 0 0 chr3 177148102 177148364 -40888794 + AluY SINE Alu 39 300 -11 242 309 57 0 chr3 177148368 177148491 -40888667 - L1ME LINE L1 -2211 3935 3806 317 277 44 44 chr3 177148512 177148718 -40888440 - HsTC2 DNA Tc2 -4 1894 1689 433 265 83 0 chr3 177148769 177148901 -40888257 - HsTC2 DNA Tc2 -1416 482 340 618 231 140 0 chr3 177148910 177149053 -40888105 + Tigger3(Golem) DNA MER2_type 1 163 -2866 * 3905 159 87 17 chr3 177149047 177149350 -40887808 + Tigger3(Golem) DNA MER2_type 2163 2444 -584 2135 109 0 0 chr3 177149350 177149643 -40887515 + AluSx SINE Alu 18 310 -2 3905 159 87 17 chr3 177149643 177150148 -40887010 + Tigger3(Golem) DNA MER2_type 2444 3027 -1 5606 162 25 0 chr3 177150230 177151655 -40885503 - L1PA15 LINE L1 0 6165 4699 1089 267 93 9 chr3 177151815 177152349 -40884809 - Zaphod DNA AcHobo -1 4030 3542 3395 143 9 4 chr3 177152349 177152900 -40884258 - MER41A LTR ERV1 0 554 1 1089 267 93 9 chr3 177152900 177153067 -40884091 - Zaphod DNA AcHobo -489 3542 362 905 245 126 48 chr3 177153071 177153467 -40883691 - MLT1D LTR MaLR -4 501 75 863 347 40 14 chr3 177153495 177153841 -40883317 - Zaphod DNA AcHobo -3666 365 11 273 221 29 15 chr3 177153973 177154041 -40883117 + MLT1I LTR MaLR 30 98 -311 507 194 126 0 chr3 177154063 177154166 -40882992 + FLAM_C SINE Alu 1 116 -27 691 280 68 78 chr3 177154194 177154591 -40882567 - LTR40a LTR ERVL -7 512 120 237 122 24 24 chr3 177154701 177154742 -40882416 - LTR40a LTR ERVL -478 41 1 * 370 361 8 8 chr3 177154742 177154860 -40882298 + MLT1I LTR MaLR 90 207 -202 1531 196 119 0 chr3 177155113 177155440 -40881718 + MER47A DNA MER2_type 1 366 0 2249 219 56 38 chr3 177155556 177156642 -40880516 - LTR27 LTR ERV1 -2 1735 7 24 0 0 0 chr3 177156735 177156759 -40880399 + AT_rich Low_complexity Low_complexity 1 24 0 239 336 26 18 chr3 177157158 177157271 -40879887 - Charlie8 DNA MER1_type -2152 265 152 26 0 0 0 chr3 177157310 177157336 -40879822 + AT_rich Low_complexity Low_complexity 1 26 0 27 0 0 0 chr3 177157560 177157587 -40879571 + AT_rich Low_complexity Low_complexity 1 27 0 206 286 0 0 chr3 177158679 177158735 -40878423 + MIR SINE MIR 183 238 -24 496 240 45 122 chr3 177158737 177158958 -40878200 + MER69 DNA AcHobo 141 344 -882 1315 266 57 81 chr3 177158959 177159625 -40877533 - MLT1E1 LTR MaLR 0 654 5 366 353 78 0 chr3 177159628 177159781 -40877377 + MER69 DNA AcHobo 340 504 -2022 817 237 249 2 chr3 177159795 177160221 -40876937 + MER69 DNA AcHobo 1984 2514 -12 32 26 0 0 chr3 177160327 177160366 -40876792 + AT_rich Low_complexity Low_complexity 1 39 0 970 187 15 76 chr3 177160551 177160813 -40876345 + MER4A LTR ERV1 1 246 -418 478 320 57 65 chr3 177161969 177162566 -40874592 + MER4A-int LTR ERV1 2266 2857 -1790 28 0 0 0 chr3 177162961 177162989 -40874169 + AT_rich Low_complexity Low_complexity 1 28 0 1001 288 73 57 chr3 177163306 177163959 -40873199 + MER4A-int LTR ERV1 6012 6675 -447 562 246 69 54 chr3 177164305 177164508 -40872650 + MER4A-int LTR ERV1 6379 6584 -14 1663 175 84 139 chr3 177164525 177165231 -40871927 + MER4A LTR ERV1 1 872 0 24 53 0 0 chr3 177165629 177165667 -40871491 + AT_rich Low_complexity Low_complexity 1 38 0 275 196 0 0 chr3 177165706 177165762 -40871396 - Alu SINE Alu 0 300 245 22 70 0 0 chr3 177165954 177165997 -40871161 + AT_rich Low_complexity Low_complexity 1 43 0 313 194 85 8 chr3 177166076 177166221 -40870937 + MER53 DNA DNA 3 189 0 31 26 0 0 chr3 177166949 177166987 -40870171 + AT_rich Low_complexity Low_complexity 1 38 0 456 265 49 6 chr3 177167453 177167615 -40869543 - LTR65 LTR ERV1 -500 169 1 330 214 145 10 chr3 177170260 177170399 -40866759 - MLT1H1 LTR MaLR 0 555 390 3720 241 87 32 chr3 177170558 177172787 -40864371 + L1MB3 LINE L1 3383 5803 -380 324 0 0 0 chr3 177172787 177172823 -40864335 + (TG)n Simple_repeat Simple_repeat 2 37 0 3720 241 87 32 chr3 177172823 177173225 -40863933 + L1MB3 LINE L1 5803 6181 -2 1076 149 60 5 chr3 177173733 177173934 -40863224 + L1MB3 LINE L1 5829 6040 -143 188 341 32 100 chr3 177174358 177174669 -40862489 + L2 LINE L2 2605 2894 -420 930 198 16 16 chr3 177174846 177175028 -40862130 + MER5A DNA MER1_type 1 182 -7 2368 194 55 72 chr3 177175030 177175793 -40861365 - THE1C-int LTR MaLR -830 750 1 2096 163 5 13 chr3 177175793 177176168 -40860990 - THE1C LTR MaLR 0 375 4 223 313 15 92 chr3 177176257 177176388 -40860770 + MER5A DNA MER1_type 63 183 -6 25 51 0 0 chr3 177177100 177177139 -40860019 + AT_rich Low_complexity Low_complexity 1 39 0 652 238 27 22 chr3 177177917 177178102 -40859056 - MER5A DNA MER1_type -1 188 3 880 162 0 0 chr3 177179437 177179608 -40857550 + AluSg/x SINE Alu 138 308 0 35 63 0 0 chr3 177180149 177180212 -40856946 + AT_rich Low_complexity Low_complexity 1 63 0 363 292 49 71 chr3 177180273 177180540 -40856618 - L1M4 LINE L1 -1308 4838 4578 2261 121 0 6 chr3 177180562 177180875 -40856283 - AluSx SINE Alu 0 312 2 43 35 0 0 chr3 177181548 177181605 -40855553 + AT_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chr3 177181661 177181683 -40855475 + AT_rich Low_complexity Low_complexity 1 22 0 371 277 5 99 chr3 177182548 177182750 -40854408 + L2 LINE L2 3113 3295 -18 3861 139 19 8 chr3 177183150 177183776 -40853382 - Tigger1 DNA MER2_type -133 2285 1653 3047 138 36 2 chr3 177183758 177184258 -40852900 - Tigger1 DNA MER2_type -965 1453 937 * 324 299 82 31 chr3 177184351 177184645 -40852513 - L1M4 LINE L1 -1643 4503 4195 21 71 0 0 chr3 177184801 177184843 -40852315 + AT_rich Low_complexity Low_complexity 1 42 0 1038 118 19 0 chr3 177184914 177185075 -40852083 + L1PA10 LINE L1 6005 6168 0 278 216 14 27 chr3 177185290 177185364 -40851794 + MIR SINE MIR 125 197 -65 4408 189 15 51 chr3 177185399 177186423 -40850735 + L1MA9 LINE L1 5326 6312 0 585 245 13 40 chr3 177186646 177186797 -40850361 + MER58A DNA MER1_type 1 147 0 342 346 110 18 chr3 177187785 177188013 -40849145 + MIR SINE MIR 13 261 -1 474 350 153 8 chr3 177188380 177188740 -40848418 + L3b LINE CR1 1116 1527 -56 419 299 182 62 chr3 177189170 177189281 -40847877 + L1MC4a LINE L1 6480 6576 -1232 261 0 0 0 chr3 177189281 177189310 -40847848 + (TG)n Simple_repeat Simple_repeat 2 30 0 419 299 182 62 chr3 177189310 177189506 -40847652 + L1MC4a LINE L1 6576 6824 -984 1111 228 116 10 chr3 177189506 177189817 -40847341 + MER2 DNA MER2_type 1 344 0 2084 233 106 40 chr3 177189817 177190611 -40846547 + Charlie1 DNA MER1_type 1908 2753 -8 4922 207 101 3 chr3 177190731 177192909 -40844249 - L1MA4 LINE L1 0 6300 3896 255 299 52 126 chr3 177193091 177193496 -40843662 + L2 LINE L2 2564 2937 -376 231 306 22 77 chr3 177193620 177193803 -40843355 + L2 LINE L2 3131 3303 -10 596 286 51 0 chr3 177194099 177194295 -40842863 - MER3 DNA MER1_type -3 206 1 260 276 8 77 chr3 177194616 177194734 -40842424 - MLT1G3 LTR MaLR -284 311 127 183 167 24 24 chr3 177194934 177194976 -40842182 - L3 LINE CR1 -7 1570 1529 1223 228 38 35 chr3 177194976 177195349 -40841809 - MLT1A2 LTR MaLR 0 374 1 21 57 0 0 chr3 177196499 177196534 -40840624 + AT_rich Low_complexity Low_complexity 1 35 0 997 33 0 0 chr3 177197510 177197632 -40839526 + L1PA4 LINE L1 6028 6149 -6 180 338 128 14 chr3 177198839 177198987 -40838171 + MIR SINE MIR 97 261 -1 1230 204 67 35 chr3 177199199 177199483 -40837675 - AluJo SINE Alu -9 303 11 31 58 0 0 chr3 177199554 177199606 -40837552 + AT_rich Low_complexity Low_complexity 1 52 0 2221 84 6 44 chr3 177200548 177200869 -40836289 + AluSq SINE Alu 5 313 0 368 258 215 21 chr3 177201217 177201412 -40835746 - MLT1D LTR MaLR -24 481 218 22 43 0 21 chr3 177201787 177201813 -40835345 + AT_rich Low_complexity Low_complexity 1 27 -19 2799 33 3 0 chr3 177201813 177202150 -40835008 + L1PA4 LINE L1 5815 6152 -3 22 43 0 21 chr3 177202150 177202170 -40834988 + AT_rich Low_complexity Low_complexity 27 46 0 2308 160 12 2 chr3 177202171 177202583 -40834575 + L1MA4 LINE L1 5445 5860 -440 341 281 35 9 chr3 177202590 177202704 -40834454 + MLT1C LTR MaLR 351 467 0 1560 226 17 49 chr3 177202775 177202910 -40834248 + L1MA4 LINE L1 5844 5982 -318 1950 126 7 14 chr3 177202910 177203203 -40833955 + AluSx SINE Alu 1 291 -21 1560 226 17 49 chr3 177203203 177203535 -40833623 + L1MA4 LINE L1 5982 6296 -4 28 22 0 22 chr3 177203721 177203737 -40833421 + AT_rich Low_complexity Low_complexity 1 16 -29 1449 191 134 34 chr3 177203737 177204124 -40833034 - MSTB LTR MaLR 0 426 1 28 22 0 22 chr3 177204124 177204153 -40833005 + AT_rich Low_complexity Low_complexity 16 45 0 32 43 0 0 chr3 177205357 177205403 -40831755 + AT_rich Low_complexity Low_complexity 1 46 0 344 315 79 48 chr3 177205824 177205989 -40831169 - MIR SINE MIR -19 243 74 690 337 73 32 chr3 177205999 177206503 -40830655 + L1ME LINE L1 8 532 -5538 332 289 56 47 chr3 177206952 177207274 -40829884 + L1ME LINE L1 720 1044 -5038 1574 251 15 79 chr3 177207319 177207852 -40829306 + LTR40a LTR ERVL 21 519 0 254 224 17 0 chr3 177207881 177207939 -40829219 + GA-rich Low_complexity Low_complexity 1 59 0 189 384 30 20 chr3 177208110 177208209 -40828949 + L3 LINE CR1 1386 1485 -92 180 324 14 27 chr3 177208267 177208341 -40828817 + MIR3 SINE MIR 125 197 -11 319 104 0 0 chr3 177208458 177208506 -40828652 - L1MB1 LINE L1 -27 6162 6115 * 1540 191 52 30 chr3 177208503 177208865 -40828293 - L1MA9 LINE L1 0 6312 5943 729 163 19 25 chr3 177208893 177209053 -40828105 + L1MA10 LINE L1 6176 6334 0 303 28 0 0 chr3 177210133 177210169 -40826989 + (CA)n Simple_repeat Simple_repeat 2 37 0 34 65 0 0 chr3 177210222 177210284 -40826874 + AT_rich Low_complexity Low_complexity 1 62 0 402 292 98 72 chr3 177210513 177210614 -40826544 - L2 LINE L2 -6 3307 3210 4438 126 21 39 chr3 177210614 177211407 -40825751 + MER4E LTR ERV1 1 779 0 402 292 98 72 chr3 177211407 177211610 -40825548 - L2 LINE L2 -103 3210 2995 1802 317 86 24 chr3 177211714 177212697 -40824461 - L2 LINE L2 -456 2858 1816 224 406 35 0 chr3 177212945 177213088 -40824070 - MER5B DNA MER1_type -27 151 4 23 0 0 0 chr3 177213526 177213549 -40823609 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr3 177213787 177213812 -40823346 + AT_rich Low_complexity Low_complexity 1 25 0 234 62 0 0 chr3 177214684 177214716 -40822442 + (GA)n Simple_repeat Simple_repeat 2 33 0 22 70 0 0 chr3 177214908 177214951 -40822207 + AT_rich Low_complexity Low_complexity 1 43 0 1880 173 3 0 chr3 177215061 177215368 -40821790 - AluSx SINE Alu -4 308 1 7612 218 21 33 chr3 177215442 177215668 -40821490 + L1M1 LINE L1 676 903 -6662 2218 123 7 0 chr3 177215668 177215977 -40821181 - AluSx SINE Alu -1 311 1 7612 218 21 33 chr3 177215977 177217457 -40819701 + L1M1 LINE L1 903 2287 -5278 1872 202 40 0 chr3 177217721 177218098 -40819060 + MSTD LTR MaLR 1 392 -4 1404 207 20 3 chr3 177218105 177218410 -40818748 + MSTD-int LTR MaLR 4 313 -1422 774 247 98 62 chr3 177218416 177218804 -40818354 + MER50 LTR ERV1 10 411 -323 1064 205 8 61 chr3 177218834 177218914 -40818244 + MER50 LTR ERV1 486 569 -165 4860 33 0 0 chr3 177218914 177219490 -40817668 - L1PA3 LINE L1 -3 6152 5577 1064 205 8 61 chr3 177219490 177219672 -40817486 + MER50 LTR ERV1 569 734 0 4234 256 93 30 chr3 177219676 177220986 -40816172 + MSTD-int LTR MaLR 314 1706 -29 1543 226 52 18 chr3 177221002 177221383 -40815775 + MSTD LTR MaLR 1 394 -2 275 294 0 0 chr3 177221401 177221469 -40815689 - Tigger7 DNA MER2_type -10 2577 2510 * 1360 265 0 0 chr3 177221465 177221759 -40815399 - Tigger7 DNA MER2_type -2193 294 1 1428 219 28 3 chr3 177222118 177222443 -40814715 - MER34C LTR ERV1 0 585 253 4338 181 27 10 chr3 177222444 177223265 -40813893 + L1PB3 LINE L1 111 945 -5259 275 125 0 0 chr3 177223292 177223332 -40813826 - MLT2A1 LTR ERVL 0 444 405 1799 222 35 67 chr3 177223412 177223920 -40813238 - MLT2B3 LTR ERVL -62 492 1 2341 194 23 40 chr3 177223923 177224108 -40813050 + L1PB3 LINE L1 956 1143 -5061 2269 74 3 0 chr3 177224108 177224437 -40812721 - AluSq SINE Alu 0 330 1 2341 194 23 40 chr3 177224437 177224924 -40812234 + L1PB3 LINE L1 1143 1612 -4592 917 147 76 0 chr3 177224956 177225113 -40812045 - L1PBb LINE L1 -5792 412 244 8179 242 83 29 chr3 177225187 177227744 -40809414 + L1PB3 LINE L1 1672 4570 -1641 186 103 0 0 chr3 177227744 177227773 -40809385 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 8179 242 83 29 chr3 177227773 177229503 -40807655 + L1PB3 LINE L1 4570 6204 -7 1711 189 62 41 chr3 177229560 177229947 -40807211 + LTR39 LTR ERV1 1 395 -388 1138 256 16 0 chr3 177229940 177230194 -40806964 + LTR39 LTR ERV1 526 783 0 * 22 0 0 0 chr3 177231757 177231779 -40805379 + AT_rich Low_complexity Low_complexity 1 22 0 1494 192 72 26 chr3 177232182 177232338 -40804820 - MLT1A1 LTR MaLR 0 365 218 3152 178 101 2 chr3 177232338 177232979 -40804179 - MER39 LTR ERV1 -2 705 1 1494 192 72 26 chr3 177232979 177233171 -40803987 - MLT1A1 LTR MaLR -147 218 1 26 0 0 0 chr3 177233402 177233428 -40803730 + AT_rich Low_complexity Low_complexity 1 26 0 35 54 0 0 chr3 177233779 177233835 -40803323 + AT_rich Low_complexity Low_complexity 1 56 0 2068 139 0 9 chr3 177233913 177234229 -40802929 + AluSq SINE Alu 1 313 0 1462 305 75 55 chr3 177234436 177235240 -40801918 - ERVL LTR ERVL -335 5429 4610 1701 231 65 45 chr3 177235249 177235739 -40801419 + MLT2B1 LTR ERVL 1 500 -20 432 0 0 0 chr3 177235752 177235800 -40801358 + (CA)n Simple_repeat Simple_repeat 1 48 0 767 303 83 73 chr3 177235843 177236374 -40800784 - ERVL LTR ERVL -1164 4600 4065 22 70 0 0 chr3 177236696 177236739 -40800419 + AT_rich Low_complexity Low_complexity 1 43 0 13518 56 6 0 chr3 177237041 177239588 -40797570 + L1PA5 LINE L1 3626 6154 0 469 314 53 10 chr3 177239741 177239948 -40797210 - ERVL LTR ERVL -1808 3956 3741 941 333 114 13 chr3 177239977 177240370 -40796788 - ERVL LTR ERVL -2093 3671 3239 24 0 0 0 chr3 177240819 177240843 -40796315 + AT_rich Low_complexity Low_complexity 1 24 0 1668 215 115 5 chr3 177240950 177241332 -40795826 - MSTB1 LTR MaLR -4 428 5 262 299 99 5 chr3 177241542 177241743 -40795415 - L1M4 LINE L1 -1036 5110 4891 1974 112 31 0 chr3 177241748 177242034 -40795124 + L1PA7 LINE L1 4 298 -6163 19036 112 5 2 chr3 177242034 177245745 -40791413 + L1PA7 LINE L1 2753 6466 -3 352 283 19 0 chr3 177246188 177246294 -40790864 - MIR SINE MIR -113 149 42 237 250 40 13 chr3 177246695 177246771 -40790387 - L3 LINE CR1 -578 999 922 2339 60 3 13 chr3 177247074 177247388 -40789770 + AluY SINE Alu 1 311 0 1567 210 52 62 chr3 177247680 177247819 -40789339 - MER65C LTR ERV1 0 461 322 1890 98 34 3 chr3 177247819 177248114 -40789044 + L1MA1 LINE L1 5993 6296 -6 1567 210 52 62 chr3 177248114 177248440 -40788718 - MER65C LTR ERV1 -139 322 1 22 0 0 0 chr3 177248495 177248517 -40788641 + AT_rich Low_complexity Low_complexity 1 22 0 270 309 105 32 chr3 177248867 177249152 -40788006 + HAL1 LINE L1 1346 1651 -856 288 364 33 0 chr3 177249419 177249540 -40787618 - MLT1I LTR MaLR -228 181 57 308 111 56 0 chr3 177250080 177250152 -40787006 + (TA)n Simple_repeat Simple_repeat 1 76 0 1213 182 28 20 chr3 177250294 177250541 -40786617 - MER34 LTR ERV1 0 542 294 22 70 0 0 chr3 177250742 177250785 -40786373 + AT_rich Low_complexity Low_complexity 1 43 0 208 237 34 0 chr3 177251348 177251407 -40785751 + (TTTA)n Simple_repeat Simple_repeat 1 61 0 390 85 0 0 chr3 177251802 177251861 -40785297 + (TG)n Simple_repeat Simple_repeat 2 60 0 3907 44 0 0 chr3 177252108 177252586 -40784572 - L1PA5 LINE L1 0 6154 5677 345 331 14 39 chr3 177253004 177253288 -40783870 - L1M4 LINE L1 -1487 4659 4383 34 65 0 0 chr3 177254275 177254337 -40782821 + AT_rich Low_complexity Low_complexity 1 62 0 309 109 0 0 chr3 177255064 177255093 -40782065 + (TG)n Simple_repeat Simple_repeat 1 75 0 309 109 0 0 chr3 177255093 177255139 -40782019 + (TG)n Simple_repeat Simple_repeat 1 46 0 1013 276 21 32 chr3 177256066 177256406 -40780752 - MLT1C LTR MaLR -7 460 125 22 0 0 0 chr3 177256553 177256575 -40780583 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 177257059 177257080 -40780078 + AT_rich Low_complexity Low_complexity 1 21 0 6608 74 6 8 chr3 177257299 177258717 -40778441 - L1PA7 LINE L1 -5 6149 4737 261 254 0 0 chr3 177258925 177258984 -40778174 + HERVL LTR ERVL 4680 4738 -916 1325 223 65 82 chr3 177259691 177260412 -40776746 + L1M4c LINE L1 862 1570 -4814 1361 176 3 46 chr3 177260449 177260765 -40776393 - MER61B LTR ERV1 -29 396 1 253 222 10 111 chr3 177260769 177260868 -40776290 + L1M4c LINE L1 1574 1662 -4722 25 31 0 0 chr3 177261045 177261077 -40776081 + AT_rich Low_complexity Low_complexity 1 32 0 303 273 42 42 chr3 177261667 177261832 -40775326 - HERVL40 LTR ERVL -2158 3372 3208 4081 126 102 35 chr3 177262877 177264187 -40772971 + pTR5 LTR ERV1 742 2438 0 45 55 0 0 chr3 177264341 177264414 -40772744 + AT_rich Low_complexity Low_complexity 1 73 0 32 0 0 0 chr3 177264430 177264462 -40772696 + AT_rich Low_complexity Low_complexity 1 32 0 1825 237 0 13 chr3 177265054 177265442 -40771716 - MLT1B LTR MaLR 0 390 8 279 0 0 0 chr3 177266075 177266106 -40771052 + (A)n Simple_repeat Simple_repeat 1 31 0 1174 250 63 3 chr3 177266106 177266390 -40770768 - MLT1A1 LTR MaLR -50 315 15 680 213 123 0 chr3 177266607 177266762 -40770396 - MSTD LTR MaLR 0 396 223 353 222 56 0 chr3 177266796 177266886 -40770272 - MSTD LTR MaLR -333 95 1 22 56 0 0 chr3 177268263 177268299 -40768859 + AT_rich Low_complexity Low_complexity 1 36 0 1991 169 17 48 chr3 177268815 177269230 -40767928 - MER65A LTR ERV1 -4 441 40 1641 189 133 13 chr3 177269241 177269623 -40767535 + MSTA LTR MaLR 1 428 0 1550 142 44 10 chr3 177269657 177269952 -40767206 - L1MA3 LINE L1 -1 6304 6000 5102 224 52 12 chr3 177269968 177271410 -40765748 - L1 LINE L1 -2192 3954 2453 201 74 0 0 chr3 177271410 177271437 -40765721 + (CA)n Simple_repeat Simple_repeat 2 28 0 520 209 99 29 chr3 177271506 177271678 -40765480 - MER65A-int LTR ERV1 -6391 1729 1546 6143 230 57 47 chr3 177271795 177274146 -40763012 - MER65A-int LTR ERV1 -2379 2492 71 1966 170 10 48 chr3 177274218 177274613 -40762545 - MER65A LTR ERV1 0 445 66 30 89 0 0 chr3 177274784 177274863 -40762295 + AT_rich Low_complexity Low_complexity 1 79 0 283 140 18 18 chr3 177275258 177275315 -40761843 + Charlie8 DNA MER1_type 73 129 -2288 1148 228 39 94 chr3 177275540 177275854 -40761304 - MLT1B LTR MaLR 0 390 103 1843 133 57 41 chr3 177275854 177276222 -40760936 + THE1C LTR MaLR 1 374 -1 1148 228 39 94 chr3 177276222 177276320 -40760838 - MLT1B LTR MaLR -287 103 1 877 308 47 58 chr3 177276452 177276983 -40760175 - L2 LINE L2 -9 3304 2767 253 323 32 16 chr3 177277080 177277204 -40759954 - HAL1b LINE L1 -831 517 392 36 40 0 0 chr3 177277235 177277285 -40759873 + AT_rich Low_complexity Low_complexity 1 50 0 32 43 0 0 chr3 177277320 177277366 -40759792 + AT_rich Low_complexity Low_complexity 1 46 0 207 0 0 0 chr3 177278560 177278583 -40758575 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 986 255 78 7 chr3 177279039 177279580 -40757578 - MER63 DNA MER1_type -44 1017 353 7722 22 0 0 chr3 177280188 177281843 -40755315 + L1PA3 LINE L1 4497 6152 -3 27 0 0 0 chr3 177281843 177281870 -40755288 + AT_rich Low_complexity Low_complexity 1 27 0 28 61 0 0 chr3 177282134 177282183 -40754975 + AT_rich Low_complexity Low_complexity 1 49 0 1789 136 13 45 chr3 177283705 177284014 -40753144 + AluJb SINE Alu 2 300 -12 862 204 71 0 chr3 177284131 177284342 -40752816 - L1MA6 LINE L1 -4 6296 6071 542 195 71 0 chr3 177284388 177284501 -40752657 - L1M2c LINE L1 -6665 124 4 257 333 0 38 chr3 177284907 177285090 -40752068 - L1M4 LINE L1 -2162 3984 3809 24 53 0 0 chr3 177285135 177285173 -40751985 + AT_rich Low_complexity Low_complexity 1 38 0 322 296 24 53 chr3 177285503 177285672 -40751486 + MLT1J LTR MaLR 348 511 0 1477 217 17 9 chr3 177285704 177286050 -40751108 + L1MA1 LINE L1 4832 5180 -966 4316 119 16 39 chr3 177286050 177286150 -40751008 + L1MA1 LINE L1 5572 5673 -629 213 65 0 0 chr3 177286150 177286181 -40750977 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4316 119 16 39 chr3 177286181 177286822 -40750336 + L1MA1 LINE L1 5673 6302 0 1874 154 13 7 chr3 177287439 177287744 -40749414 - AluSx SINE Alu -5 307 1 3208 213 117 4 chr3 177288619 177289454 -40747704 - L1MA6 LINE L1 -75 6225 5296 398 206 84 15 chr3 177289458 177289589 -40747569 + L1MA7 LINE L1 6141 6280 -11 237 374 0 0 chr3 177289609 177289692 -40747466 - MIR SINE MIR -157 105 23 33 0 0 0 chr3 177290136 177290169 -40746989 + AT_rich Low_complexity Low_complexity 1 33 0 413 353 24 0 chr3 177290327 177290494 -40746664 + MIR SINE MIR 73 243 -19 802 217 105 50 chr3 177290642 177291080 -40746078 - MER34B LTR ERV1 -61 504 35 207 291 18 0 chr3 177291086 177291141 -40746017 - L2 LINE L2 -656 2658 2603 11721 172 39 18 chr3 177291717 177294078 -40743080 + Tigger1 DNA MER2_type 4 2414 -4 258 103 0 0 chr3 177294474 177294513 -40742645 - MER52A LTR ERV1 -1716 39 1 * 3551 197 78 46 chr3 177294513 177295452 -40741706 + MER52C LTR ERV1 309 1278 0 2258 96 3 0 chr3 177295597 177295898 -40741260 - AluY SINE Alu -9 302 1 27 29 0 0 chr3 177296128 177296162 -40740996 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr3 177297179 177297209 -40739949 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr3 177297467 177297489 -40739669 + (A)n Simple_repeat Simple_repeat 1 22 0 245 275 12 25 chr3 177297549 177297629 -40739529 - HAL1 LINE L1 -944 1563 1485 406 302 74 85 chr3 177297883 177298261 -40738897 - HAL1 LINE L1 -1139 1368 995 27 29 0 0 chr3 177299039 177299073 -40738085 + AT_rich Low_complexity Low_complexity 1 34 0 210 333 42 21 chr3 177299910 177300006 -40737152 + MIR SINE MIR 48 145 -117 642 288 18 6 chr3 177300106 177300276 -40736882 - MLT1A2 LTR MaLR -202 172 1 520 247 66 33 chr3 177300456 177300638 -40736520 - L1MDa LINE L1 -6319 221 34 14092 206 27 20 chr3 177350785 177350979 -40686179 - L1M1 LINE L1 -4612 2953 2762 459 0 0 0 chr3 177350979 177351030 -40686128 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 14092 206 27 20 chr3 177351030 177353755 -40683403 - L1M1 LINE L1 -4803 2762 14 27045 122 36 13 chr3 177354344 177359010 -40678148 - L1P3 LINE L1 -910 5551 728 4703 135 18 6 chr3 177359009 177359413 -40677745 + L1P3 LINE L1 3 421 -6040 * 198 0 0 0 chr3 177359413 177359435 -40677723 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 4703 135 18 6 chr3 177359435 177359747 -40677411 + L1P3 LINE L1 421 728 -5733 33 43 0 0 chr3 177359872 177359919 -40677239 + AT_rich Low_complexity Low_complexity 1 47 0 1510 113 0 12 chr3 177361918 177362166 -40674992 + L1PA14 LINE L1 5263 5507 -654 1956 117 9 25 chr3 177362166 177362491 -40674667 + L1PA14 LINE L1 5841 6161 0 183 274 16 16 chr3 177363208 177363270 -40673888 + L2 LINE L2 3008 3069 -244 335 270 34 0 chr3 177363495 177363584 -40673574 - U13 snRNA snRNA -9 95 4 328 331 117 38 chr3 177367312 177367738 -40669420 - MLT1J LTR MaLR -45 466 7 25 0 0 0 chr3 177367971 177367996 -40669162 + AT_rich Low_complexity Low_complexity 1 25 0 183 304 131 68 chr3 177368841 177369032 -40668126 + MIR SINE MIR 43 245 -17 33 0 0 0 chr3 177369032 177369065 -40668093 + AT_rich Low_complexity Low_complexity 1 33 0 2256 100 3 10 chr3 177369065 177369376 -40667782 - AluSg SINE Alu -1 309 1 21 57 0 0 chr3 177370132 177370167 -40666991 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr3 177370714 177370738 -40666420 + AT_rich Low_complexity Low_complexity 1 24 0 1097 194 71 84 chr3 177371679 177372046 -40665112 - MLT1A1 LTR MaLR 0 365 4 7819 113 10 5 chr3 177372199 177373359 -40663799 - L1PA8 LINE L1 -1367 4779 3614 6634 85 10 0 chr3 177373362 177374730 -40662428 + L1PA8 LINE L1 4798 6171 -1 326 141 0 16 chr3 177375670 177375734 -40661424 + (TCC)n Simple_repeat Simple_repeat 2 64 0 238 304 25 0 chr3 177377143 177377222 -40659936 - MLT1J LTR MaLR -327 184 104 42 77 0 0 chr3 177377299 177377390 -40659768 + AT_rich Low_complexity Low_complexity 1 91 0 5711 93 10 2 chr3 177377515 177378325 -40658833 + L1PA7 LINE L1 5336 6151 -3 21 36 0 0 chr3 177378408 177378436 -40658722 + AT_rich Low_complexity Low_complexity 1 28 0 377 284 52 69 chr3 177378438 177378846 -40658312 - MER57A LTR ERV1 0 403 3 1743 310 41 30 chr3 177378852 177379736 -40657422 - MER57-int LTR ERV1 -392 7145 6253 43856 32 21 1 chr3 177379739 177385760 -40651398 + L1HS LINE L1 7 6151 -4 579 64 13 0 chr3 177386114 177386192 -40650966 - MADE1 DNA Mariner 0 80 2 529 314 62 13 chr3 177386353 177386579 -40650579 - MER57-int LTR ERV1 -1328 6209 5973 39 50 0 0 chr3 177387127 177387187 -40649971 + AT_rich Low_complexity Low_complexity 1 60 0 23 33 0 0 chr3 177388943 177388973 -40648185 + GC_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr3 177389170 177389192 -40647966 + GC_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 177389653 177389681 -40647477 + GC_rich Low_complexity Low_complexity 1 28 0 952 195 30 40 chr3 177394697 177394897 -40642261 - MER63A DNA MER1_type -12 198 1 360 0 0 0 chr3 177395047 177395087 -40642071 + (TG)n Simple_repeat Simple_repeat 1 40 0 1966 136 0 0 chr3 177395158 177395437 -40641721 - AluJb SINE Alu -18 294 16 192 217 0 0 chr3 177395471 177395517 -40641641 + GA-rich Low_complexity Low_complexity 2 47 0 290 248 22 44 chr3 177395636 177395773 -40641385 + L1ME3A LINE L1 5830 5963 -207 199 164 55 0 chr3 177395926 177395981 -40641177 + GA-rich Low_complexity Low_complexity 2 59 0 1196 42 0 0 chr3 177397760 177397902 -40639256 - AluSp/q SINE Alu 0 313 172 1663 207 90 0 chr3 177398672 177399039 -40638119 + MLT1G LTR MaLR 189 588 -2 564 271 117 46 chr3 177399127 177399648 -40637510 - L2 LINE L2 -559 2755 2198 1214 162 0 14 chr3 177399651 177399867 -40637291 + AluJo SINE Alu 87 299 -13 371 265 49 31 chr3 177399868 177400091 -40637067 - L2 LINE L2 -1109 2205 1979 2079 94 25 0 chr3 177400148 177400446 -40636712 + AluSx SINE Alu 1 305 0 2262 125 3 0 chr3 177400540 177400851 -40636307 + AluSx SINE Alu 1 312 0 623 259 23 6 chr3 177401236 177401410 -40635748 - AluJb SINE Alu -15 297 121 333 0 0 0 chr3 177401441 177401478 -40635680 + (TTAA)n Simple_repeat Simple_repeat 2 38 0 280 173 29 12 chr3 177401926 177401996 -40635162 + Alu SINE Alu 252 298 -4 647 199 176 0 chr3 177401996 177402172 -40634986 + L1ME3A LINE L1 5964 6170 0 283 295 107 20 chr3 177402671 177402969 -40634189 + L2 LINE L2 2365 2688 -626 821 259 65 65 chr3 177403001 177403465 -40633693 - L2 LINE L2 -32 3281 2818 227 297 14 14 chr3 177403855 177403929 -40633229 - L2 LINE L2 -30 3242 3169 1352 179 108 14 chr3 177408479 177408776 -40628382 - L1ME LINE L1 -427 5737 5413 474 171 12 0 chr3 177408805 177408901 -40628257 + L1ME3 LINE L1 6075 6333 -1 2035 64 0 0 chr3 177409021 177409256 -40627902 + AluSx SINE Alu 58 292 -20 1556 169 55 21 chr3 177409263 177409553 -40627605 + AluJb SINE Alu 1 300 -12 551 218 73 77 chr3 177409553 177409772 -40627386 + L1ME3 LINE L1 5885 6102 -60 1021 131 0 0 chr3 177409772 177409917 -40627241 + AluSq/x SINE Alu 1 145 -168 1590 160 86 18 chr3 177410352 177410690 -40626468 - THE1C LTR MaLR 0 375 15 1507 179 18 0 chr3 177410744 177411024 -40626134 + MER57A LTR ERV1 119 403 0 1248 263 25 4 chr3 177411024 177411593 -40625565 + L1M4 LINE L1 2535 3200 -2946 23 0 0 0 chr3 177411816 177411839 -40625319 + AT_rich Low_complexity Low_complexity 1 23 0 2447 214 56 35 chr3 177411861 177412118 -40625040 - L1MB8 LINE L1 -5 6173 5923 302 45 23 0 chr3 177412118 177412162 -40624996 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 2447 214 56 35 chr3 177412162 177412655 -40624503 - L1MB8 LINE L1 -255 5923 5407 273 187 22 157 chr3 177412655 177412789 -40624369 - L1M4b LINE L1 -6031 828 713 1055 254 72 24 chr3 177412884 177413215 -40623943 - L1M4b LINE L1 -6464 395 49 23 92 0 0 chr3 177413367 177413432 -40623726 + AT_rich Low_complexity Low_complexity 1 65 0 421 301 66 25 chr3 177413689 177413885 -40623273 + L1MCb LINE L1 13 216 -5829 2318 272 52 35 chr3 177413886 177414235 -40622923 - L1MCb LINE L1 -4851 1194 853 210 91 0 0 chr3 177414235 177414268 -40622890 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 7742 14 0 0 chr3 177414268 177415459 -40621699 - L1PA3 LINE L1 -8 6147 4958 2318 272 52 35 chr3 177415459 177416417 -40620741 - L1MCb LINE L1 -5191 854 3 1389 276 69 15 chr3 177416437 177417324 -40619834 + L1M4 LINE L1 2134 3068 -3078 26 50 0 0 chr3 177419128 177419168 -40617990 + AT_rich Low_complexity Low_complexity 1 40 0 280 255 62 62 chr3 177421758 177421919 -40615239 + ERVL LTR ERVL 2430 2590 -3174 590 245 9 85 chr3 177421925 177422083 -40615075 + Charlie1a DNA MER1_type 2 143 -2618 1999 137 0 3 chr3 177422083 177422390 -40614768 + AluSq SINE Alu 1 306 0 590 245 9 85 chr3 177422390 177422442 -40614716 + Charlie1a DNA MER1_type 143 197 -1258 22 0 0 0 chr3 177422869 177422891 -40614267 + AT_rich Low_complexity Low_complexity 1 22 0 401 283 45 30 chr3 177423457 177423722 -40613436 - L1M4 LINE L1 -2973 3173 2905 23 54 0 0 chr3 177424344 177424381 -40612777 + AT_rich Low_complexity Low_complexity 1 37 0 24 77 0 0 chr3 177424531 177424583 -40612575 + AT_rich Low_complexity Low_complexity 1 52 0 524 314 76 82 chr3 177425851 177426300 -40610858 - L2 LINE L2 -4 3309 2864 1483 223 0 0 chr3 177426314 177426592 -40610566 + AluJb SINE Alu 3 280 -32 288 120 0 0 chr3 177426595 177426645 -40610513 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 24 0 0 0 chr3 177426653 177426677 -40610481 + AT_rich Low_complexity Low_complexity 1 24 0 238 306 0 0 chr3 177426687 177426749 -40610409 - L2 LINE L2 -474 2840 2779 23 33 0 0 chr3 177427166 177427196 -40609962 + AT_rich Low_complexity Low_complexity 1 30 0 27 49 0 0 chr3 177427254 177427295 -40609863 + AT_rich Low_complexity Low_complexity 1 41 0 197 81 0 27 chr3 177428518 177428555 -40608603 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 300 316 55 15 chr3 177429007 177429406 -40607752 + L1M4 LINE L1 3596 4010 -2136 228 221 13 26 chr3 177429407 177429484 -40607674 + L1M4 LINE L1 5066 5141 -1005 555 272 81 68 chr3 177429489 177429669 -40607489 - L1M4 LINE L1 -964 5182 5006 1921 149 18 52 chr3 177429669 177430057 -40607101 + THE1C LTR MaLR 1 375 0 555 272 81 68 chr3 177430057 177430851 -40606307 - L1M4 LINE L1 -1140 5006 4012 24 32 0 0 chr3 177430937 177430968 -40606190 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr3 177431049 177431078 -40606080 + AT_rich Low_complexity Low_complexity 1 29 0 26 30 0 0 chr3 177431161 177431194 -40605964 + AT_rich Low_complexity Low_complexity 1 33 0 1599 211 7 26 chr3 177431440 177431744 -40605414 + AluJo SINE Alu 1 298 -14 1961 147 0 13 chr3 177433078 177433377 -40603781 - AluSq SINE Alu -18 295 1 2395 7 11 18 chr3 177433440 177433751 -40603407 - AluY SINE Alu 0 309 1 348 24 0 0 chr3 177434040 177434081 -40603077 + (CA)n Simple_repeat Simple_repeat 2 42 0 2229 123 3 0 chr3 177434140 177434490 -40602668 + AluSx SINE Alu 3 353 0 319 278 63 78 chr3 177434755 177435090 -40602068 + L1MEd LINE L1 821 1150 -4969 1709 123 63 37 chr3 177435135 177435435 -40601723 + AluSg SINE Alu 1 308 -2 5698 178 23 6 chr3 177435760 177437678 -40599480 - L1MA3 LINE L1 0 7724 5770 10594 210 16 9 chr3 177437683 177439868 -40597290 - L1MA3 LINE L1 -5356 2209 8 24 0 0 0 chr3 177440111 177440135 -40597023 + AT_rich Low_complexity Low_complexity 1 24 0 333 47 0 0 chr3 177440408 177440451 -40596707 + (CA)n Simple_repeat Simple_repeat 2 44 0 182 315 101 13 chr3 177440451 177440600 -40596558 - L2 LINE L2 -126 3187 3026 381 254 11 0 chr3 177440648 177440755 -40596403 + MLT1J2 LTR MaLR 55 200 -302 521 262 47 7 chr3 177441008 177441157 -40596001 + MIR SINE MIR 75 229 -33 321 300 33 60 chr3 177441379 177441529 -40595629 - L2 LINE L2 -588 2726 2581 11155 174 72 20 chr3 177441562 177442423 -40594735 - Tigger2 DNA MER2_type -141 2577 1762 2363 84 6 10 chr3 177442423 177442734 -40594424 - AluSp SINE Alu -3 310 1 11155 174 72 20 chr3 177442734 177443595 -40593563 - Tigger2 DNA MER2_type -956 1762 947 276 30 0 0 chr3 177443595 177443628 -40593530 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 11155 174 72 20 chr3 177443628 177444354 -40592804 - Tigger2 DNA MER2_type -1771 947 1 22 0 0 0 chr3 177445382 177445404 -40591754 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr3 177445673 177445700 -40591458 + AT_rich Low_complexity Low_complexity 1 27 0 200 57 38 57 chr3 177445751 177445804 -40591354 + (TATAA)n Simple_repeat Simple_repeat 4 55 0 244 257 14 29 chr3 177445843 177445913 -40591245 - L2 LINE L2 -6 3307 3239 216 97 0 0 chr3 177446597 177446628 -40590530 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 2306 87 0 3 chr3 177447860 177448148 -40589010 + AluSx SINE Alu 18 304 -8 385 191 12 36 chr3 177448166 177448250 -40588908 - MLT1G1 LTR MaLR -462 133 52 221 326 186 36 chr3 177448260 177448646 -40588512 + L2 LINE L2 2839 3282 -31 23 33 0 0 chr3 177449925 177449955 -40587203 + GC_rich Low_complexity Low_complexity 1 30 0 552 153 9 36 chr3 177451074 177451185 -40585973 + AluSg/x SINE Alu 190 297 -15 201 328 96 8 chr3 177451190 177451315 -40585843 - L2 LINE L2 -610 2704 2569 186 43 0 0 chr3 177451523 177451546 -40585612 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2113 106 0 7 chr3 177451548 177451832 -40585326 - AluSg SINE Alu -28 282 1 226 315 55 48 chr3 177452539 177452685 -40584473 + L2 LINE L2 3167 3313 0 449 0 0 35 chr3 177453621 177453679 -40583479 + (GGAA)n Simple_repeat Simple_repeat 4 59 0 374 241 131 29 chr3 177454401 177454538 -40582620 - MIR SINE MIR -36 226 76 314 244 47 0 chr3 177455061 177455147 -40582011 + CT-rich Low_complexity Low_complexity 3 92 0 212 139 0 23 chr3 177455157 177455200 -40581958 + (CCCCCT)n Simple_repeat Simple_repeat 1 42 0 25 0 0 0 chr3 177456332 177456357 -40580801 + GC_rich Low_complexity Low_complexity 1 25 0 381 292 68 43 chr3 177459614 177459775 -40577383 + MIR3 SINE MIR 22 186 -22 209 218 0 18 chr3 177459800 177459855 -40577303 + (TGAA)n Simple_repeat Simple_repeat 3 56 0 583 280 117 17 chr3 177460978 177461217 -40575941 - Charlie8 DNA MER1_type -2141 276 14 2094 98 28 0 chr3 177461464 177461751 -40575407 - AluSp SINE Alu -18 295 1 234 0 0 0 chr3 177461895 177461921 -40575237 + (TG)n Simple_repeat Simple_repeat 1 26 0 519 167 44 9 chr3 177462253 177462367 -40574791 + FLAM_C SINE Alu 1 118 -15 2032 68 8 0 chr3 177463947 177464195 -40572963 + AluSp SINE Alu 1 250 -63 1869 93 12 8 chr3 177465709 177465966 -40571192 - AluSx SINE Alu -54 258 1 309 136 0 0 chr3 177465968 177466027 -40571131 + L1MA10 LINE L1 6266 6324 -10 2343 101 3 0 chr3 177466030 177466337 -40570821 - AluSx SINE Alu -4 308 1 235 317 79 0 chr3 177467520 177467621 -40569537 + L2 LINE L2 1686 1794 -1520 760 254 59 31 chr3 177467708 177467964 -40569194 + L1MC4a LINE L1 5701 5963 -1845 206 256 251 62 chr3 177468194 177468549 -40568609 + L2 LINE L2 1827 2248 -1066 199 102 20 102 chr3 177468728 177468777 -40568381 - L2 LINE L2 -6 3307 3263 261 261 92 42 chr3 177468785 177468904 -40568254 - MIR SINE MIR -90 172 48 1159 107 24 6 chr3 177470074 177470242 -40566916 - AluSg SINE Alu -126 184 14 1157 169 35 4 chr3 177470276 177470507 -40566651 - L1MB4 LINE L1 -11 6169 5932 485 329 46 42 chr3 177470512 177470749 -40566409 - L3 LINE CR1 -73 1504 1267 297 270 17 74 chr3 177471132 177471362 -40565796 - HAL1 LINE L1 -1247 1260 1044 2598 156 112 17 chr3 177471525 177472043 -40565115 - MLT1F1 LTR MaLR 0 567 1 1817 156 20 10 chr3 177472089 177472391 -40564767 + AluSx SINE Alu 1 305 -7 252 100 0 0 chr3 177472503 177472543 -40564615 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 651 239 126 34 chr3 177472543 177472782 -40564376 - L2 LINE L2 -13 3300 3040 200 367 65 12 chr3 177473639 177473887 -40563271 - L2 LINE L2 -493 2821 2561 180 0 0 0 chr3 177474559 177474579 -40562579 + (T)n Simple_repeat Simple_repeat 1 20 0 1878 148 10 7 chr3 177474747 177475037 -40562121 + AluJo SINE Alu 9 299 -13 1167 131 0 18 chr3 177475038 177475206 -40561952 + AluJb SINE Alu 134 298 -14 2271 182 18 26 chr3 177475257 177475714 -40561444 + LTR32 LTR ERVL 15 467 -4 943 242 25 46 chr3 177475722 177475958 -40561200 + L1ME3A LINE L1 5667 5898 -272 2051 142 0 7 chr3 177475958 177476267 -40560891 + AluSx SINE Alu 1 307 -5 943 242 25 46 chr3 177476267 177476311 -40560847 + L1ME3A LINE L1 5898 5941 -229 23 68 0 0 chr3 177477507 177477551 -40559607 + GC_rich Low_complexity Low_complexity 1 44 0 25 0 0 0 chr3 177477607 177477632 -40559526 + GC_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr3 177480546 177480572 -40556586 + GC_rich Low_complexity Low_complexity 1 26 0 265 200 0 0 chr3 177481326 177481371 -40555787 - LTR16C LTR ERVL -11 480 436 535 238 42 104 chr3 177481375 177481615 -40555543 - LTR16C LTR ERVL -178 313 89 994 274 73 79 chr3 177481767 177482208 -40554950 - MLT1K LTR MaLR -23 565 128 1478 179 0 19 chr3 177482399 177482662 -40554496 + AluJb SINE Alu 44 301 -11 374 111 14 0 chr3 177482662 177482734 -40554424 - Charlie4a DNA MER1_type -88 420 348 2395 103 0 3 chr3 177482737 177483048 -40554110 + AluSx SINE Alu 1 310 -2 2172 88 19 23 chr3 177483073 177483380 -40553778 + AluSq SINE Alu 1 306 -7 529 115 9 115 chr3 177483806 177483919 -40553239 - AluJo SINE Alu -125 187 87 1353 132 0 10 chr3 177484094 177484317 -40552841 - AluSg/x SINE Alu 0 312 105 1062 166 16 5 chr3 177484352 177484539 -40552619 - AluJb SINE Alu -4 308 120 1594 151 59 33 chr3 177485497 177485801 -40551357 + AluSx SINE Alu 1 312 0 1112 240 113 35 chr3 177486222 177486701 -40550457 + MLT1H1 LTR MaLR 40 555 0 1181 239 30 0 chr3 177486726 177487023 -40550135 - Charlie4a DNA MER1_type -201 307 2 2207 128 0 3 chr3 177487362 177487666 -40549492 - AluSx SINE Alu -9 303 1 2207 142 3 0 chr3 177488281 177488590 -40548568 - AluSx SINE Alu 0 312 3 1104 158 35 30 chr3 177488603 177488806 -40548352 - AluJb SINE Alu -2 310 107 321 26 0 0 chr3 177488821 177488859 -40548299 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 602 305 38 59 chr3 177488859 177489200 -40547958 - L2 LINE L2 -618 2696 2363 294 308 44 0 chr3 177489211 177489302 -40547856 + L2 LINE L2 3174 3268 -4 512 120 54 0 chr3 177489326 177489418 -40547740 + AluS SINE Alu 2 98 -215 234 262 0 16 chr3 177489422 177489483 -40547675 + MIR SINE MIR 2 61 -201 230 141 28 42 chr3 177492011 177492082 -40545076 + (GGGTG)n Simple_repeat Simple_repeat 1 70 0 191 77 0 0 chr3 177493150 177493176 -40543982 + (CCCCG)n Simple_repeat Simple_repeat 5 30 0 414 39 0 0 chr3 177493933 177493985 -40543173 + (TG)n Simple_repeat Simple_repeat 2 53 0 790 282 53 36 chr3 177494274 177494704 -40542454 + L2 LINE L2 2658 3090 -182 28 48 0 0 chr3 177495581 177495623 -40541535 + GC_rich Low_complexity Low_complexity 1 42 0 245 135 19 0 chr3 177495729 177495781 -40541377 + (CA)n Simple_repeat Simple_repeat 1 53 0 2623 141 56 22 chr3 177497529 177497640 -40539518 + L1MB8 LINE L1 5564 5670 -508 1810 143 0 0 chr3 177497640 177497905 -40539253 + AluSq SINE Alu 1 265 -48 2623 141 56 22 chr3 177497905 177498295 -40538863 + L1MB8 LINE L1 5670 6082 -96 258 160 0 0 chr3 177498380 177498430 -40538728 + C-rich Low_complexity Low_complexity 4 53 0 22 35 0 0 chr3 177498558 177498587 -40538571 + GC_rich Low_complexity Low_complexity 1 29 0 198 225 11 28 chr3 177498587 177498765 -40538393 + C-rich Low_complexity Low_complexity 4 178 0 299 232 288 0 chr3 177499207 177499332 -40537826 - MLT1J LTR MaLR -111 400 240 4068 156 101 23 chr3 177499404 177500185 -40536973 + MER21B LTR ERV1 1 842 -21 285 243 14 0 chr3 177503076 177503158 -40534000 - MIR SINE MIR -65 143 54 310 267 11 0 chr3 177505432 177505522 -40531636 - AluS SINE Alu -211 92 2 1381 197 15 112 chr3 177505526 177505999 -40531159 - MLT1C LTR MaLR -40 427 1 233 322 0 0 chr3 177506001 177506060 -40531098 - MLT1H1 LTR MaLR -496 59 1 819 242 201 4 chr3 177506067 177506336 -40530822 - LTR16C LTR ERVL -72 419 98 22 0 0 0 chr3 177506549 177506571 -40530587 + AT_rich Low_complexity Low_complexity 1 22 0 288 254 18 55 chr3 177506772 177506882 -40530276 + GA-rich Low_complexity Low_complexity 1 106 0 2241 110 0 16 chr3 177507141 177507458 -40529700 + AluSx SINE Alu 1 312 0 300 232 32 32 chr3 177509421 177509516 -40527642 + L1MC4 LINE L1 6612 6706 -1336 607 164 185 0 chr3 177511582 177511728 -40525430 - MER53 DNA DNA -6 183 11 24 0 0 0 chr3 177511926 177511950 -40525208 + AT_rich Low_complexity Low_complexity 1 24 0 607 270 88 26 chr3 177512226 177512452 -40524706 + MIR SINE MIR 2 241 -21 25 51 0 0 chr3 177512886 177512925 -40524233 + AT_rich Low_complexity Low_complexity 1 39 0 9171 113 15 2 chr3 177513168 177514560 -40522598 - L1PA7 LINE L1 -1539 4607 3198 5933 82 57 5 chr3 177514560 177516052 -40521106 + L1PA7 LINE L1 4613 6154 0 27 0 0 0 chr3 177517252 177517279 -40519879 + AT_rich Low_complexity Low_complexity 1 27 0 28 29 0 0 chr3 177518478 177518513 -40518645 + AT_rich Low_complexity Low_complexity 1 35 0 277 300 57 29 chr3 177519185 177519325 -40517833 - MLT1H LTR MaLR -304 245 102 247 263 8 135 chr3 177519649 177519782 -40517376 - MLT1H-int LTR MaLR -274 1097 982 25 31 0 0 chr3 177520337 177520369 -40516789 + AT_rich Low_complexity Low_complexity 1 32 0 643 313 83 49 chr3 177520694 177521181 -40515977 - MLT1G1 LTR MaLR 0 595 1 307 156 66 0 chr3 177521199 177521321 -40515837 + (TA)n Simple_repeat Simple_repeat 1 130 0 406 201 71 0 chr3 177521354 177521508 -40515650 + (TA)n Simple_repeat Simple_repeat 1 165 0 2082 231 62 28 chr3 177521508 177522085 -40515073 - L1MD3 LINE L1 0 7995 7399 225 250 23 80 chr3 177522086 177522174 -40514984 - MLT1F1 LTR MaLR -448 119 37 706 195 127 0 chr3 177522179 177522384 -40514774 - L1MD3 LINE L1 -880 7115 6885 7736 231 70 49 chr3 177522386 177523176 -40513982 - L1MC3 LINE L1 0 7785 7013 419 0 0 19 chr3 177523176 177523228 -40513930 + (TAA)n Simple_repeat Simple_repeat 2 52 0 7736 231 70 49 chr3 177523228 177525770 -40511388 - L1MC3 LINE L1 -772 7013 4384 583 235 7 7 chr3 177525850 177525986 -40511172 - L1PA15 LINE L1 0 6165 6030 465 36 0 0 chr3 177525989 177526045 -40511113 + MADE1 DNA Mariner 25 80 0 957 179 12 0 chr3 177526046 177526219 -40510939 - L1PA15 LINE L1 -135 6030 5856 * 1215 229 3 53 chr3 177526218 177526559 -40510599 - L1P LINE L1 -2319 3827 3504 2201 143 16 16 chr3 177526566 177526937 -40510221 - THE1C LTR MaLR -4 371 1 469 157 11 11 chr3 177526937 177527026 -40510132 - THE1C-int LTR MaLR 0 1580 1492 4556 189 21 14 chr3 177528177 177529516 -40507642 - L1PB4 LINE L1 0 6156 4808 252 257 27 80 chr3 177529633 177529820 -40507338 + L1M4 LINE L1 5015 5191 -955 209 107 54 18 chr3 177530198 177530254 -40506904 + CT-rich Low_complexity Low_complexity 2 59 0 2041 269 65 25 chr3 177530697 177531716 -40505442 + L1ME1 LINE L1 2228 3287 -2859 1645 259 80 46 chr3 177531703 177532264 -40504894 + L1ME1 LINE L1 5426 6017 -149 * 2142 82 23 10 chr3 177532264 177532567 -40504591 + AluSp SINE Alu 7 313 0 1645 259 80 46 chr3 177532567 177532704 -40504454 + L1ME1 LINE L1 6017 6148 -18 217 343 29 69 chr3 177533466 177533568 -40503590 + MER5B DNA MER1_type 2 99 -79 212 333 118 10 chr3 177533506 177533608 -40503550 - MER5A DNA MER1_type -72 117 5 * 21 0 0 0 chr3 177534146 177534167 -40502991 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr3 177534544 177534571 -40502587 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr3 177535696 177535720 -40501438 + AT_rich Low_complexity Low_complexity 1 24 0 22 80 0 0 chr3 177537279 177537329 -40499829 + AT_rich Low_complexity Low_complexity 1 50 0 735 178 22 56 chr3 177537366 177537546 -40499612 - FRAM SINE Alu 0 176 3 24 0 0 0 chr3 177537724 177537748 -40499410 + AT_rich Low_complexity Low_complexity 1 24 0 1794 299 91 47 chr3 177538825 177539779 -40497379 + L2 LINE L2 1797 2792 -522 494 350 7 52 chr3 177539933 177540222 -40496936 + L2 LINE L2 2817 3092 -221 24 0 0 0 chr3 177540801 177540825 -40496333 + AT_rich Low_complexity Low_complexity 1 24 0 357 200 71 58 chr3 177541784 177541939 -40495219 - Looper DNA T2_type -15 1543 1387 3047 189 110 19 chr3 177541951 177542788 -40494370 - Looper DNA T2_type -605 953 41 303 196 36 27 chr3 177543028 177543140 -40494018 + (TA)n Simple_repeat Simple_repeat 1 113 0 836 167 0 48 chr3 177543683 177543851 -40493307 + L1MA9 LINE L1 5849 6008 -304 * 1644 249 14 0 chr3 177543836 177544273 -40492885 + L1P LINE L1 3071 3513 -2633 1351 248 3 13 chr3 177544496 177544799 -40492359 - AluJo SINE Alu -12 300 1 180 0 0 0 chr3 177544821 177544841 -40492317 + (A)n Simple_repeat Simple_repeat 1 20 0 358 265 133 60 chr3 177545671 177545706 -40491452 - MIR SINE MIR -13 249 218 4424 87 0 2 chr3 177545706 177546294 -40490864 - LTR14C LTR ERVK 0 587 1 358 265 133 60 chr3 177546294 177546424 -40490734 - MIR SINE MIR -44 218 72 302 308 107 25 chr3 177546893 177546942 -40490216 - LTR16A LTR ERVL 0 450 406 1464 205 50 24 chr3 177546942 177547322 -40489836 - MLT1B LTR MaLR 0 390 1 302 308 107 25 chr3 177547322 177547431 -40489727 - LTR16A LTR ERVL -44 406 279 414 0 0 0 chr3 177548094 177548140 -40489018 + (TG)n Simple_repeat Simple_repeat 1 46 0 216 0 0 0 chr3 177548139 177548163 -40488995 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 1469 203 10 13 chr3 177548378 177548689 -40488469 + AluJb SINE Alu 1 310 -2 222 219 0 0 chr3 177548692 177548733 -40488425 + GA-rich Low_complexity Low_complexity 3 43 0 21 36 0 0 chr3 177549437 177549465 -40487693 + AT_rich Low_complexity Low_complexity 1 28 0 304 261 23 0 chr3 177549610 177549698 -40487460 + L1MC4 LINE L1 6614 6703 -1339 236 304 0 0 chr3 177549719 177549798 -40487360 - L1MC4 LINE L1 -1340 6702 6624 234 0 0 0 chr3 177551942 177551968 -40485190 + (TA)n Simple_repeat Simple_repeat 2 27 0 602 212 31 10 chr3 177553003 177553196 -40483962 + L1MB1 LINE L1 2897 3093 -3053 2221 129 28 6 chr3 177553196 177553552 -40483606 - THE1B LTR MaLR 0 364 1 9159 138 38 35 chr3 177553552 177555126 -40482032 - THE1B-int LTR MaLR 0 1580 3 2084 127 42 22 chr3 177555130 177555490 -40481668 - THE1B LTR MaLR -2 424 1 7313 207 66 31 chr3 177555490 177556942 -40480216 + L1MB1 LINE L1 3089 4488 -1680 237 87 0 0 chr3 177556942 177556988 -40480170 + LTR66 LTR ERVL 394 439 -171 7313 207 66 31 chr3 177556988 177558329 -40478829 + L1MB1 LINE L1 4488 6021 -147 532 192 0 0 chr3 177558330 177558434 -40478724 + L1MB1 LINE L1 6065 6168 0 21 0 0 0 chr3 177558781 177558802 -40478356 + AT_rich Low_complexity Low_complexity 1 21 0 26144 131 46 62 chr3 177558966 177565212 -40471946 + L1PA7 LINE L1 13 6152 -2 232 275 260 10 chr3 177565393 177565593 -40471565 + L2 LINE L2 2253 2502 -812 17123 201 30 18 chr3 177565605 177573211 -40463947 + L1MA1 LINE L1 16 7717 -4 28 0 0 0 chr3 177573211 177573239 -40463919 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr3 177573271 177573295 -40463863 + AT_rich Low_complexity Low_complexity 1 24 0 268 365 39 6 chr3 177573321 177573477 -40463681 + L2 LINE L2 2529 2689 -625 1961 152 0 7 chr3 177573538 177573848 -40463310 + AluSc SINE Alu 2 309 0 404 354 15 41 chr3 177573852 177573947 -40463211 + L2 LINE L2 2702 2791 -523 2730 29 0 0 chr3 177573947 177574260 -40462898 + AluYb8 SINE Alu 1 313 -5 404 354 15 41 chr3 177574260 177574359 -40462799 + L2 LINE L2 2791 2891 -423 345 250 19 100 chr3 177574599 177574759 -40462399 + L2 LINE L2 3161 3307 -6 851 160 12 0 chr3 177576004 177576173 -40460985 + CT-rich Low_complexity Low_complexity 2 172 0 3038 251 94 4 chr3 177576173 177577361 -40459797 + L1 LINE L1 2184 3598 -2548 1199 161 14 100 chr3 177577360 177577709 -40459449 - L1M1 LINE L1 -4885 2680 2362 * 2729 264 75 23 chr3 177577704 177578636 -40458522 - L1M1 LINE L1 -5455 2110 689 1440 250 28 0 chr3 177578641 177578961 -40458197 - L1M1 LINE L1 -7221 344 16 2063 211 18 26 chr3 177578961 177579656 -40457502 - L1M1 LINE L1 -631 5672 4978 8373 38 0 0 chr3 177579671 177582202 -40454956 - L1PA4 LINE L1 -1 6154 3574 8174 37 4 1 chr3 177582200 177583228 -40453930 + L1PA4 LINE L1 2543 3573 -2573 * 8129 243 50 41 chr3 177583225 177586570 -40450588 - L1 LINE L1 -1153 5695 2387 * 866 237 16 21 chr3 177586579 177586773 -40450385 + MER61A LTR ERV1 1 193 -150 313 91 0 0 chr3 177586754 177586798 -40450360 + MER61A LTR ERV1 300 343 0 * 1868 233 40 17 chr3 177586799 177587271 -40449887 + MER61A-int LTR ERV1 1 483 -4734 884 28 0 0 chr3 177587271 177587378 -40449780 - L1P2 LINE L1 -334 5821 5715 894 10 0 0 chr3 177587378 177587479 -40449679 + L1PA2 LINE L1 6051 6152 -3 315 203 0 0 chr3 177587484 177587548 -40449610 + MER61A-int LTR ERV1 486 549 -4668 20155 126 30 21 chr3 177587693 177588146 -40449012 + MER61A-int LTR ERV1 1406 1853 -3364 2248 95 7 3 chr3 177588146 177588440 -40448718 - AluY SINE Alu -16 295 1 20155 126 30 21 chr3 177588440 177591310 -40445848 + MER61A-int LTR ERV1 1853 4796 -421 1120 153 32 0 chr3 177591300 177591490 -40445668 + MER61A-int LTR ERV1 5021 5216 -1 * 1828 157 36 18 chr3 177591490 177591827 -40445331 + MER61A LTR ERV1 1 343 0 789 305 27 25 chr3 177591848 177593128 -40444030 - L1 LINE L1 -4575 2274 824 22 0 0 0 chr3 177593966 177593988 -40443170 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 177595402 177595430 -40441728 + AT_rich Low_complexity Low_complexity 1 28 0 368 82 16 0 chr3 177595780 177595841 -40441317 + (TG)n Simple_repeat Simple_repeat 1 62 0 193 250 98 0 chr3 177596051 177596135 -40441023 + MIR SINE MIR 46 136 -72 2117 119 13 10 chr3 177596320 177596631 -40440527 + AluSp SINE Alu 1 312 -1 2162 141 16 32 chr3 177597132 177597502 -40439656 - THE1B LTR MaLR 0 364 1 9183 146 36 10 chr3 177597502 177599042 -40438116 - THE1B-int LTR MaLR 0 1580 2 1963 163 16 27 chr3 177599043 177599411 -40437747 - THE1B LTR MaLR 0 364 1 580 231 23 8 chr3 177599633 177599763 -40437395 + FLAM_C SINE Alu 2 133 0 23 0 0 0 chr3 177599795 177599818 -40437340 + AT_rich Low_complexity Low_complexity 1 23 0 1684 214 12 0 chr3 177600428 177600769 -40436389 - MER7A DNA MER2_type 0 346 4 260 353 46 33 chr3 177600973 177601126 -40436032 + MIR SINE MIR 37 191 -71 1579 193 4 4 chr3 177601685 177601959 -40435199 + AluJo SINE Alu 12 285 -27 315 229 57 0 chr3 177602616 177602738 -40434420 + L1M4 LINE L1 3065 3193 -2953 367 311 36 12 chr3 177602748 177602926 -40434232 + L1MCa LINE L1 1 164 -5881 399 265 0 0 chr3 177602926 177603009 -40434149 + MLT1A2 LTR MaLR 1 83 -291 1898 177 40 44 chr3 177603016 177603554 -40433604 - MLT2A2 LTR ERVL -13 541 2 704 208 68 107 chr3 177603555 177603863 -40433295 + MLT1A2 LTR MaLR 79 374 0 802 300 74 14 chr3 177603900 177604267 -40432891 + L1MCa LINE L1 198 586 -5459 1668 278 33 21 chr3 177604359 177604614 -40432544 + L1MCa LINE L1 570 820 -5493 3140 158 63 17 chr3 177604614 177605198 -40431960 + LTR9 LTR ERV1 1 611 -1 1668 278 33 21 chr3 177605198 177605356 -40431802 + L1MCa LINE L1 820 975 -5338 769 87 9 17 chr3 177605356 177605471 -40431687 + L1PA7 LINE L1 6036 6149 -5 1668 278 33 21 chr3 177605471 177605922 -40431236 + L1MCa LINE L1 975 1453 -4860 3323 273 70 44 chr3 177605961 177608270 -40428888 + L1MCa LINE L1 2264 4621 -1943 * 3693 186 54 51 chr3 177608239 177609147 -40428011 + L1MC1 LINE L1 5841 6751 0 1128 283 47 17 chr3 177609164 177609758 -40427400 + L1MCa LINE L1 4625 5236 -1328 311 301 65 5 chr3 177609763 177609949 -40427209 + L1MCa LINE L1 5387 5583 -981 2080 107 0 4 chr3 177609973 177610254 -40426904 + AluSx SINE Alu 3 282 -30 21 0 0 0 chr3 177610381 177610402 -40426756 + AT_rich Low_complexity Low_complexity 1 21 0 9314 42 0 2 chr3 177611549 177612701 -40424457 + L1P LINE L1 4010 5159 -987 1594 212 53 63 chr3 177613320 177613830 -40423328 - MLT1D LTR MaLR 0 505 1 928 194 56 39 chr3 177614117 177614349 -40422809 - MLT1D LTR MaLR 0 505 270 708 230 18 12 chr3 177614399 177614564 -40422594 - MLT1D LTR MaLR -334 171 6 21 0 0 0 chr3 177614729 177614750 -40422408 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 177614874 177614898 -40422260 + AT_rich Low_complexity Low_complexity 1 24 0 229 188 62 16 chr3 177615584 177615648 -40421510 - L1MA10 LINE L1 -5 6329 6263 * 877 89 58 20 chr3 177615616 177615787 -40421371 + L1MA2 LINE L1 6027 6200 -104 352 208 14 14 chr3 177615899 177615971 -40421187 + MLT1F1 LTR MaLR 67 138 -429 24 67 0 0 chr3 177616163 177616208 -40420950 + AT_rich Low_complexity Low_complexity 1 45 0 21 71 0 0 chr3 177616446 177616488 -40420670 + AT_rich Low_complexity Low_complexity 1 42 0 1592 234 18 5 chr3 177617855 177618253 -40418905 + L1MC3 LINE L1 6595 6997 -788 4213 209 36 13 chr3 177618255 177619104 -40418054 + L1PA15-16 LINE L1 3 871 -5978 562 315 107 27 chr3 177619850 177620148 -40417010 - MLT1J2 LTR MaLR -123 327 6 33 66 0 0 chr3 177620976 177621037 -40416121 + AT_rich Low_complexity Low_complexity 1 61 0 23 0 0 0 chr3 177621250 177621273 -40415885 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr3 177621458 177621488 -40415670 + AT_rich Low_complexity Low_complexity 1 30 0 261 329 96 51 chr3 177623068 177623360 -40413798 + L2 LINE L2 2931 3235 -78 2310 310 30 33 chr3 177623462 177623699 -40413459 - L1M3b LINE L1 -4905 1376 1140 230 0 33 0 chr3 177623699 177623729 -40413429 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 2310 310 30 33 chr3 177623729 177624936 -40412222 - L1M3b LINE L1 -5141 1140 56 419 139 0 13 chr3 177624936 177625015 -40412143 + (TTTC)n Simple_repeat Simple_repeat 3 80 0 467 177 0 0 chr3 177625015 177625094 -40412064 - AluSc SINE Alu -37 272 194 321 344 56 44 chr3 177625338 177625588 -40411570 - L1ME3A LINE L1 -30 6140 5888 371 309 14 43 chr3 177625633 177625840 -40411318 - L1ME3A LINE L1 -391 5779 5579 2318 79 0 13 chr3 177626071 177626386 -40410772 + AluY SINE Alu 1 311 0 21 36 0 0 chr3 177626441 177626469 -40410689 + AT_rich Low_complexity Low_complexity 1 28 0 236 365 71 0 chr3 177626469 177626595 -40410563 + MIR SINE MIR 91 225 -37 1713 189 116 13 chr3 177626926 177626948 -40410210 - MSTA LTR MaLR 0 428 410 2309 132 0 0 chr3 177626948 177627258 -40409900 + AluY SINE Alu 2 311 0 1713 189 116 13 chr3 177627258 177627616 -40409542 - MSTA LTR MaLR -18 410 9 377 272 54 76 chr3 177627652 177627876 -40409282 + L2 LINE L2 3094 3312 -1 23 0 0 0 chr3 177628624 177628647 -40408511 + AT_rich Low_complexity Low_complexity 1 23 0 22 70 0 0 chr3 177628919 177628962 -40408196 + AT_rich Low_complexity Low_complexity 1 43 0 403 280 36 31 chr3 177629046 177629318 -40407840 - L1MD1 LINE L1 -89 6077 5860 890 84 0 0 chr3 177629419 177629538 -40407620 - L1P LINE L1 -4900 1246 1128 24 0 0 0 chr3 177629939 177629963 -40407195 + AT_rich Low_complexity Low_complexity 1 24 0 994 219 13 17 chr3 177631470 177631708 -40405450 - Tigger1 DNA MER2_type -2175 243 7 7128 186 15 14 chr3 177631830 177633086 -40404072 - MER52A LTR ERV1 0 1755 498 1973 122 3 10 chr3 177634398 177634709 -40402449 - AluSg SINE Alu -1 309 1 21 0 0 0 chr3 177634711 177634732 -40402426 + AT_rich Low_complexity Low_complexity 1 21 0 396 321 57 93 chr3 177634810 177635368 -40401790 - L2 LINE L2 -1412 1902 1365 347 282 61 0 chr3 177635519 177635650 -40401508 + MIR SINE MIR 96 234 -28 335 336 83 21 chr3 177635845 177636086 -40401072 - L2 LINE L2 -2342 972 717 433 385 48 16 chr3 177636161 177636470 -40400688 + MLT1I LTR MaLR 56 374 -35 1237 246 0 6 chr3 177637203 177637516 -40399642 + AluSq SINE Alu 3 313 0 6559 226 75 38 chr3 177637536 177639630 -40397528 + L1MC3 LINE L1 5186 7354 -431 528 240 85 0 chr3 177639633 177639762 -40397396 + MLT2B1 LTR ERVL 1 140 -380 586 233 17 0 chr3 177639769 177639889 -40397269 + L1MC/D LINE L1 5564 5685 -659 759 217 36 101 chr3 177639911 177640147 -40397011 + MLT2D LTR ERVL 143 360 -54 351 0 0 0 chr3 177640147 177640186 -40396972 + (CA)n Simple_repeat Simple_repeat 2 40 0 759 217 36 101 chr3 177640186 177640226 -40396932 + MLT2D LTR ERVL 360 401 -13 1232 230 43 40 chr3 177640229 177640651 -40396507 + L1MC3 LINE L1 7361 7783 -2 2171 108 0 3 chr3 177640754 177641051 -40396107 - AluSc SINE Alu -13 296 1 36074 60 5 1 chr3 177641487 177646947 -40390211 - L1PA5 LINE L1 -3 6151 673 27 49 0 0 chr3 177647354 177647395 -40389763 + AT_rich Low_complexity Low_complexity 1 41 0 1826 137 56 0 chr3 177647404 177647688 -40389470 + AluSq SINE Alu 1 300 -13 1965 134 13 0 chr3 177648776 177649081 -40388077 + AluY SINE Alu 3 311 0 305 355 53 20 chr3 177649298 177649450 -40387708 + L1MEd LINE L1 299 455 -5664 46 33 0 0 chr3 177649754 177649814 -40387344 + AT_rich Low_complexity Low_complexity 1 60 0 320 256 95 77 chr3 177649853 177650126 -40387032 + L1MEd LINE L1 901 1178 -4941 2107 78 0 81 chr3 177651162 177651483 -40385675 + AluY SINE Alu 1 295 -16 193 213 0 38 chr3 177652283 177652363 -40384795 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 32 26 0 0 chr3 177652633 177652672 -40384486 + AT_rich Low_complexity Low_complexity 1 39 0 305 259 37 111 chr3 177653022 177653185 -40383973 + L1ME LINE L1 5464 5613 -508 2337 168 21 9 chr3 177653185 177653608 -40383550 - MSTA LTR MaLR 0 428 1 305 259 37 111 chr3 177653608 177653633 -40383525 + L1ME LINE L1 5613 5638 -483 24 53 0 0 chr3 177653801 177653839 -40383319 + AT_rich Low_complexity Low_complexity 1 38 0 2107 252 47 52 chr3 177653978 177654269 -40382889 + L1ME1 LINE L1 5001 5292 -874 513 131 0 0 chr3 177654269 177654353 -40382805 + L1MA1 LINE L1 6215 6298 -4 2107 252 47 52 chr3 177654353 177655225 -40381933 + L1ME1 LINE L1 5292 6161 -5 2230 94 3 0 chr3 177655527 177655826 -40381332 + AluSx SINE Alu 3 302 -10 21 0 0 0 chr3 177656285 177656306 -40380852 + AT_rich Low_complexity Low_complexity 1 21 0 22 111 0 0 chr3 177656596 177656695 -40380463 + AT_rich Low_complexity Low_complexity 1 99 0 1917 157 82 17 chr3 177657027 177657429 -40379729 + MSTA LTR MaLR 1 428 0 225 65 0 0 chr3 177657572 177657603 -40379555 + (TG)n Simple_repeat Simple_repeat 2 32 0 31 82 0 0 chr3 177658524 177658597 -40378561 + AT_rich Low_complexity Low_complexity 1 73 0 4452 151 10 2 chr3 177658662 177659747 -40377411 - THE1C-int LTR MaLR -446 1134 2 2329 141 16 3 chr3 177659748 177660118 -40377040 - THE1C LTR MaLR 0 375 1 1183 173 14 27 chr3 177660119 177660339 -40376819 + L1PA15 LINE L1 5928 6144 -21 23 0 0 0 chr3 177660372 177660395 -40376763 + AT_rich Low_complexity Low_complexity 1 23 0 778 254 143 48 chr3 177660768 177661126 -40376032 + MLT1E1 LTR MaLR 4 395 -259 1997 128 0 0 chr3 177661181 177661478 -40375680 - AluSx SINE Alu 0 307 11 727 237 121 5 chr3 177661581 177661788 -40375370 + MLT1E1 LTR MaLR 361 591 -2 195 274 0 0 chr3 177662004 177662055 -40375103 + L2 LINE L2 3219 3269 -44 349 317 104 45 chr3 177662059 177662368 -40374790 + MLT1I LTR MaLR 57 383 -26 23 33 0 0 chr3 177663616 177663646 -40373512 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr3 177663742 177663771 -40373387 + AT_rich Low_complexity Low_complexity 1 29 0 252 43 65 0 chr3 177663903 177663949 -40373209 + (TA)n Simple_repeat Simple_repeat 1 49 0 252 0 0 0 chr3 177663948 177663976 -40373182 + (GA)n Simple_repeat Simple_repeat 2 29 0 444 19 0 0 chr3 177666492 177666545 -40370613 + (TG)n Simple_repeat Simple_repeat 2 54 0 23 33 0 0 chr3 177666894 177666924 -40370234 + AT_rich Low_complexity Low_complexity 1 30 0 2008 110 34 3 chr3 177667369 177667661 -40369497 - AluSx SINE Alu -11 301 1 217 329 164 10 chr3 177667997 177668204 -40368954 + MIR SINE MIR 9 247 -15 304 288 50 50 chr3 177668511 177668650 -40368508 - MLT1I LTR MaLR -269 140 2 248 386 18 18 chr3 177668716 177668830 -40368328 - MIR SINE MIR -63 145 32 1241 273 37 48 chr3 177669060 177669493 -40367665 + LTR41 LTR ERVL 340 767 -6 2824 139 187 93 chr3 177669702 177670530 -40366628 + Tigger3b DNA MER2_type 1 906 -325 311 284 0 0 chr3 177670527 177670594 -40366564 + Tigger3b DNA MER2_type 1165 1231 0 * 2261 104 0 0 chr3 177670688 177670996 -40366162 + AluY SINE Alu 1 308 -3 21 71 0 0 chr3 177671443 177671485 -40365673 + AT_rich Low_complexity Low_complexity 1 42 0 353 250 0 11 chr3 177672854 177672946 -40364212 + L2 LINE L2 2359 2449 -865 29 0 0 0 chr3 177673076 177673105 -40364053 + AT_rich Low_complexity Low_complexity 1 29 0 416 380 62 22 chr3 177673183 177673457 -40363701 + L2 LINE L2 2543 2827 -487 22 56 0 0 chr3 177673526 177673562 -40363596 + AT_rich Low_complexity Low_complexity 1 36 0 183 292 202 42 chr3 177674929 177675097 -40362061 + MIR SINE MIR 6 200 -62 2204 51 40 4 chr3 177675374 177675706 -40361452 - AluY SINE Alu 0 342 1 181 98 49 0 chr3 177676080 177676121 -40361037 + (TA)n Simple_repeat Simple_repeat 2 44 0 425 308 110 6 chr3 177676166 177676348 -40360810 - MIR SINE MIR -4 258 58 1527 194 82 0 chr3 177676356 177676685 -40360473 - L1 LINE L1 -1876 4270 3915 2577 204 44 27 chr3 177676686 177676823 -40360335 + L1MA9 LINE L1 4657 4790 -1395 333 0 0 0 chr3 177676823 177676860 -40360298 + (TA)n Simple_repeat Simple_repeat 2 38 0 2577 204 44 27 chr3 177676860 177677495 -40359663 + L1MA9 LINE L1 4790 5438 -747 3446 186 39 18 chr3 177677507 177678306 -40358852 + L1MA9 LINE L1 5497 6312 0 23 54 0 0 chr3 177678354 177678391 -40358767 + AT_rich Low_complexity Low_complexity 1 37 0 414 276 28 77 chr3 177678403 177678584 -40358574 + L2 LINE L2 2969 3140 -173 21 0 0 0 chr3 177679498 177679519 -40357639 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 177680565 177680586 -40356572 + AT_rich Low_complexity Low_complexity 1 21 0 3621 288 80 74 chr3 177680645 177682683 -40354475 + L1 LINE L1 10 2058 -4791 2975 36 8 0 chr3 177682683 177683042 -40354116 + L1PA4 LINE L1 5470 5831 -324 6806 256 49 16 chr3 177683045 177685765 -40351393 + L1 LINE L1 2147 4960 -1888 471 284 54 7 chr3 177686147 177686295 -40350863 + LTR33 LTR ERVL 3 157 -364 524 291 89 38 chr3 177686324 177686616 -40350542 + LTR33 LTR ERVL 206 512 -9 1543 263 80 24 chr3 177686749 177687122 -40350036 - L1ME1 LINE L1 -17 6149 5798 7413 34 0 4 chr3 177687122 177688145 -40349013 - L1PA4 LINE L1 -3 6152 5131 1543 263 80 24 chr3 177688145 177688574 -40348584 - L1ME1 LINE L1 -368 5798 5255 269 274 44 0 chr3 177688584 177688719 -40348439 + (TA)n Simple_repeat Simple_repeat 2 142 0 200 86 29 0 chr3 177688803 177688838 -40348320 + (TTTTA)n Simple_repeat Simple_repeat 4 39 0 309 276 0 60 chr3 177688847 177688981 -40348177 - L1ME1 LINE L1 -1039 5107 4982 1077 303 65 16 chr3 177688994 177689807 -40347351 - L1ME1 LINE L1 -1125 5021 4166 470 161 42 25 chr3 177689861 177689979 -40347179 + L1MB2 LINE L1 6050 6169 -2 366 287 41 17 chr3 177690042 177690335 -40346823 - L1ME1 LINE L1 -2000 4146 3798 22 35 0 0 chr3 177690391 177690420 -40346738 + AT_rich Low_complexity Low_complexity 1 29 0 1829 219 32 31 chr3 177690467 177690981 -40346177 - L1MC3 LINE L1 -32 7753 5789 612 170 27 90 chr3 177690963 177691033 -40346125 - L1MA5 LINE L1 -22 6278 6205 * 1960 122 0 0 chr3 177691033 177691333 -40345825 + AluSg1 SINE Alu 2 301 0 612 170 27 90 chr3 177691333 177691449 -40345709 - L1MA5 LINE L1 -95 6205 6103 646 202 0 8 chr3 177691466 177691585 -40345573 + AluJb SINE Alu 167 284 -28 406 118 0 94 chr3 177691600 177691685 -40345473 - AluJo SINE Alu -176 136 60 2665 180 34 69 chr3 177691711 177692136 -40345022 - L1MA4 LINE L1 -182 6118 5724 1125 179 35 109 chr3 177692136 177692448 -40344710 + AluJb SINE Alu 1 289 -13 2665 180 34 69 chr3 177692448 177692701 -40344457 - L1MA4 LINE L1 -576 5724 5464 1242 208 0 0 chr3 177692700 177692950 -40344208 - L1P LINE L1 -3057 3089 2840 * 526 263 78 48 chr3 177692947 177692996 -40344162 - L1ME1 LINE L1 -2892 3254 3208 * 2045 128 0 0 chr3 177692996 177693294 -40343864 - AluSg SINE Alu -12 298 1 526 263 78 48 chr3 177693294 177693705 -40343453 - L1ME1 LINE L1 -2938 3208 2780 2342 14 29 0 chr3 177694400 177694676 -40342482 - L1PA2 LINE L1 -5 6150 5867 2313 92 0 3 chr3 177695176 177695501 -40341657 - L1PA12 LINE L1 -10 6158 5835 1167 173 72 26 chr3 177695608 177695900 -40341258 - LTR48B LTR ERV1 -2 642 384 2446 58 10 7 chr3 177695911 177696381 -40340777 - AluY SINE Alu 0 471 1 1025 234 58 8 chr3 177696405 177696662 -40340496 - LTR48B LTR ERV1 -346 298 29 4121 203 27 58 chr3 177698557 177698595 -40338563 - MER54A LTR ERVL 0 901 863 2257 130 99 8 chr3 177698595 177698987 -40338171 + MSTA LTR MaLR 1 428 0 4121 203 27 58 chr3 177698987 177699877 -40337281 - MER54A LTR ERVL -38 863 2 276 308 41 53 chr3 177699885 177700054 -40337104 + MIR SINE MIR 82 248 -14 26 30 0 0 chr3 177700334 177700367 -40336791 + AT_rich Low_complexity Low_complexity 1 33 0 37 23 0 0 chr3 177700409 177700453 -40336705 + AT_rich Low_complexity Low_complexity 1 44 0 994 240 65 46 chr3 177700685 177701052 -40336106 + MLT1A2 LTR MaLR 1 374 0 461 231 19 0 chr3 177701721 177701829 -40335329 - MIR3 SINE MIR -13 195 86 24 0 0 0 chr3 177701882 177701906 -40335252 + AT_rich Low_complexity Low_complexity 1 24 0 499 303 0 0 chr3 177752042 177752187 -40284971 + HERV16 LTR ERVL 3690 3834 -1820 312 172 17 0 chr3 177752189 177752247 -40284911 + L1MCa LINE L1 2006 2064 -4362 * 316 237 21 54 chr3 177752230 177752323 -40284835 + L1MC4 LINE L1 6614 6703 -1339 * 354 206 0 0 chr3 177752281 177752349 -40284809 - L1MC4 LINE L1 -1339 6703 6636 255 240 67 80 chr3 177752361 177752511 -40284647 + HERV16 LTR ERVL 3567 3714 -1282 665 291 59 0 chr3 177752567 177752770 -40284388 - MER58C DNA MER1_type 0 215 1 255 292 11 0 chr3 177753188 177753277 -40283881 - Zaphod DNA AcHobo -74 3957 3868 1197 147 5 5 chr3 177753403 177753593 -40283565 - AluSq SINE Alu -123 190 1 180 271 28 75 chr3 177753800 177753907 -40283251 - MIR3 SINE MIR -1 207 106 27 49 0 0 chr3 177754131 177754172 -40282986 + AT_rich Low_complexity Low_complexity 1 41 0 28 61 0 0 chr3 177754551 177754600 -40282558 + AT_rich Low_complexity Low_complexity 1 49 0 23 33 0 0 chr3 177755315 177755345 -40281813 + AT_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr3 177755446 177755479 -40281679 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr3 177756114 177756140 -40281018 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr3 177756889 177756918 -40280240 + AT_rich Low_complexity Low_complexity 1 29 0 27 62 0 0 chr3 177757095 177757143 -40280015 + AT_rich Low_complexity Low_complexity 1 48 0 313 274 167 20 chr3 177757563 177757767 -40279391 - L1M4 LINE L1 -2987 3159 2926 475 255 43 7 chr3 177758025 177758166 -40278992 + L1MCb LINE L1 569 714 -5331 1528 119 0 13 chr3 177758171 177758406 -40278752 - AluSq SINE Alu -9 304 73 2048 228 24 0 chr3 177758667 177759132 -40278026 - L1 LINE L1 -1181 4965 4490 3895 151 70 53 chr3 177759164 177759213 -40277945 + L1MA7 LINE L1 5284 5331 -960 2240 101 13 0 chr3 177759213 177759519 -40277639 - AluSg SINE Alu 0 310 1 3895 151 70 53 chr3 177759519 177759993 -40277165 + L1MA7 LINE L1 5331 5830 -461 195 114 0 0 chr3 177759993 177760028 -40277130 + (CA)n Simple_repeat Simple_repeat 1 35 0 3895 151 70 53 chr3 177760028 177760356 -40276802 + L1MA7 LINE L1 5830 6151 -140 274 256 136 68 chr3 177760655 177760831 -40276327 + MIR3 SINE MIR 18 205 -3 341 252 19 19 chr3 177761026 177761075 -40276083 + MER58 DNA MER1_type 169 217 -124 1701 146 6 51 chr3 177761075 177761391 -40275767 + AluSx SINE Alu 1 302 -10 341 252 19 19 chr3 177761391 177761444 -40275714 + MER58 DNA MER1_type 216 271 -70 21 71 0 0 chr3 177761945 177761987 -40275171 + AT_rich Low_complexity Low_complexity 1 42 0 189 107 0 0 chr3 177762023 177762051 -40275107 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 285 247 0 0 chr3 177762176 177762257 -40274901 + (CATA)n Simple_repeat Simple_repeat 2 82 0 569 88 0 0 chr3 177763151 177763231 -40273927 + MADE1 DNA Mariner 1 80 0 19730 32 1 0 chr3 177763908 177767091 -40270067 + L1PA3 LINE L1 2970 6155 0 903 242 8 12 chr3 177767091 177767339 -40269819 + L1 LINE L1 3261 3507 -2639 388 288 61 25 chr3 177767692 177767855 -40269303 - L1ME LINE L1 -465 5697 5529 25 75 0 0 chr3 177770086 177770139 -40267019 + AT_rich Low_complexity Low_complexity 1 53 0 265 269 65 0 chr3 177771141 177771234 -40265924 - LTR41 LTR ERVL -10 763 665 640 196 67 39 chr3 177771676 177771855 -40265303 - LTR41 LTR ERVL -589 184 1 25 0 0 0 chr3 177771882 177771907 -40265251 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr3 177771949 177771972 -40265186 + AT_rich Low_complexity Low_complexity 1 23 0 195 179 51 0 chr3 177772364 177772403 -40264755 - L2 LINE L2 -13 3259 3219 505 291 94 41 chr3 177772444 177772868 -40264290 + L1ME LINE L1 4483 4948 -1198 1775 160 7 10 chr3 177773099 177773392 -40263766 + AluSx SINE Alu 9 300 -12 250 289 32 36 chr3 177773455 177773700 -40263458 + L1ME LINE L1 5258 5502 -660 663 198 97 97 chr3 177774880 177775107 -40262051 - L1MD3 LINE L1 -360 7635 7409 393 320 8 0 chr3 177775112 177775234 -40261924 - MLT1F1 LTR MaLR -442 125 3 399 239 15 52 chr3 177775235 177775262 -40261896 - L1MD3 LINE L1 -716 7279 7253 2035 128 3 7 chr3 177775262 177775558 -40261600 - AluSx SINE Alu -17 295 1 399 239 15 52 chr3 177775558 177775664 -40261494 - L1MD3 LINE L1 -742 7253 7151 417 320 33 0 chr3 177775666 177775788 -40261370 + MLT1A1 LTR MaLR 3 128 -300 198 150 0 0 chr3 177775823 177775863 -40261295 + (TC)n Simple_repeat Simple_repeat 2 41 0 509 263 42 21 chr3 177775899 177776089 -40261069 + MLT1A1 LTR MaLR 172 365 0 250 228 129 0 chr3 177776094 177776195 -40260963 - L1MD3 LINE L1 -847 7148 7035 960 326 12 21 chr3 177776199 177776533 -40260625 - MLT1E2 LTR MaLR -8 618 288 2194 221 92 33 chr3 177776702 177777420 -40259738 - L1MC3 LINE L1 -1629 6225 5466 1897 178 17 20 chr3 177777421 177777775 -40259383 + MLT1A2 LTR MaLR 6 358 -16 2539 271 34 54 chr3 177777791 177778964 -40258194 - L1MC3 LINE L1 -744 5471 4327 2031 95 3 52 chr3 177778964 177779290 -40257868 - AluY SINE Alu -1 310 1 2539 271 34 54 chr3 177779290 177779470 -40257688 - L1MC3 LINE L1 -1888 4327 4145 237 160 53 27 chr3 177779499 177779574 -40257584 + (TA)n Simple_repeat Simple_repeat 2 78 0 430 229 29 0 chr3 177779588 177779693 -40257465 - L1MA9 LINE L1 -53 6259 6152 720 273 86 11 chr3 177779742 177780284 -40256874 - L1MC3 LINE L1 -2065 4150 3537 1136 219 5 0 chr3 177780286 177780487 -40256671 - AluJo SINE Alu -26 286 85 320 297 11 0 chr3 177780487 177780578 -40256580 - L1MC4 LINE L1 -1337 6705 6614 267 301 0 0 chr3 177780580 177780693 -40256465 + (CATATA)n Simple_repeat Simple_repeat 2 114 0 261 0 0 0 chr3 177780696 177780725 -40256433 + (TG)n Simple_repeat Simple_repeat 1 29 0 2093 126 3 0 chr3 177780754 177781048 -40256110 - AluSp SINE Alu -18 295 1 336 251 150 54 chr3 177781048 177781110 -40256048 - L1MC3 LINE L1 -3998 2398 2343 2158 146 85 10 chr3 177781110 177781508 -40255650 + MSTA LTR MaLR 1 428 0 336 251 150 54 chr3 177781508 177781832 -40255326 - L1MC3 LINE L1 -4053 2343 1975 211 195 11 58 chr3 177781866 177781953 -40255205 + (CACTA)n Simple_repeat Simple_repeat 5 87 0 2248 71 7 7 chr3 177781973 177782281 -40254877 + AluY SINE Alu 1 308 -3 4495 123 271 85 chr3 177782534 177783964 -40253194 - pTR5 LTR ERV1 0 2438 743 435 94 62 0 chr3 177785713 177785809 -40251349 + (TA)n Simple_repeat Simple_repeat 1 102 0 296 218 0 0 chr3 177785812 177785867 -40251291 + MER54A LTR ERVL 125 179 -722 540 148 14 7 chr3 177785867 177786009 -40251149 + (TA)n Simple_repeat Simple_repeat 1 143 0 21 0 0 0 chr3 177786532 177786553 -40250605 + AT_rich Low_complexity Low_complexity 1 21 0 426 248 27 20 chr3 177787590 177787605 -40249553 - L1MA10 LINE L1 -2 6332 6318 986 279 56 33 chr3 177787605 177788085 -40249073 - L1ME2 LINE L1 -9 6155 5665 232 222 0 0 chr3 177788075 177788138 -40249020 - L1MC3 LINE L1 -1135 6650 6588 * 243 256 47 0 chr3 177788095 177788181 -40248977 + L1MC4 LINE L1 6614 6703 -1339 22 0 0 0 chr3 177788181 177788203 -40248955 + AT_rich Low_complexity Low_complexity 1 22 0 463 218 97 24 chr3 177788203 177788327 -40248831 - L1ME2 LINE L1 -506 5660 5528 21 0 0 0 chr3 177789518 177789539 -40247619 + AT_rich Low_complexity Low_complexity 1 21 0 22 94 0 0 chr3 177789628 177789692 -40247466 + AT_rich Low_complexity Low_complexity 1 64 0 1636 139 4 0 chr3 177789880 177790125 -40247033 + AluSg/x SINE Alu 65 310 0 304 225 22 0 chr3 177792103 177792192 -40244966 + L1MA8 LINE L1 6194 6284 -7 904 169 126 0 chr3 177792544 177792727 -40244431 - AluSg/x SINE Alu -17 295 90 22 35 0 0 chr3 177793154 177793183 -40243975 + AT_rich Low_complexity Low_complexity 1 29 0 207 178 27 14 chr3 177794408 177794481 -40242677 + CT-rich Low_complexity Low_complexity 2 75 0 25 65 0 0 chr3 177794894 177794940 -40242218 + AT_rich Low_complexity Low_complexity 1 46 0 396 59 0 0 chr3 177795384 177795435 -40241723 + (TG)n Simple_repeat Simple_repeat 2 52 0 959 252 23 4 chr3 177795439 177795697 -40241461 + L1MB5 LINE L1 5628 5890 -284 * 3406 194 31 11 chr3 177795688 177796333 -40240825 + L1MA3 LINE L1 16 673 -6892 1244 218 12 0 chr3 177796317 177796569 -40240589 + L1MA3 LINE L1 1098 1352 -6213 * 2975 105 33 0 chr3 177796570 177796999 -40240159 - MLT2A1 LTR ERVL -1 443 1 9884 91 13 0 chr3 177796999 177798324 -40238834 - HERVL-A1 LTR ERVL 0 5654 4313 5829 99 9 0 chr3 177798317 177799108 -40238050 - HERVL LTR ERVL -4791 863 66 * 246 267 0 13 chr3 177799108 177799183 -40237975 + L1MC4 LINE L1 6642 6715 -1327 2159 103 6 10 chr3 177799288 177799599 -40237559 - MLT2A1 LTR ERVL -134 310 1 10908 194 42 15 chr3 177799599 177801625 -40235533 + L1MA3 LINE L1 1348 3317 -4248 351 0 0 0 chr3 177801625 177801664 -40235494 + (CA)n Simple_repeat Simple_repeat 2 40 0 10908 194 42 15 chr3 177801664 177801834 -40235324 + L1MA3 LINE L1 3317 3481 -4084 908 129 27 0 chr3 177801834 177801981 -40235177 + L1MA3 LINE L1 6150 6300 -5 10908 194 42 15 chr3 177801981 177803037 -40234121 + L1MA3 LINE L1 3481 4691 -2874 * 18524 50 10 3 chr3 177803033 177805406 -40231752 + L1P LINE L1 606 2993 -3153 6711 170 24 76 chr3 177805515 177805958 -40231200 + L1MA3 LINE L1 4873 5337 -2387 1587 134 106 7 chr3 177805958 177806233 -40230925 + AluSx SINE Alu 1 302 -10 6711 170 24 76 chr3 177806233 177808816 -40228342 + L1MA3 LINE L1 5337 7724 0 619 265 133 0 chr3 177808820 177809031 -40228127 + L1MB4 LINE L1 5860 6098 -82 1048 65 0 43 chr3 177809279 177809418 -40227740 + AluSp SINE Alu 1 133 -180 21 0 0 0 chr3 177809898 177809919 -40227239 + AT_rich Low_complexity Low_complexity 1 21 0 1152 203 14 0 chr3 177809919 177810126 -40227032 + AluJb SINE Alu 1 210 -102 1503 157 0 115 chr3 177810179 177810517 -40226641 + AluSx SINE Alu 1 299 -3 456 119 60 0 chr3 177811571 177811655 -40225503 - L1MB4 LINE L1 -3 6177 6089 1555 195 80 0 chr3 177811657 177811995 -40225163 - L1MB3 LINE L1 -131 6052 5688 21 0 0 0 chr3 177812035 177812056 -40225102 + AT_rich Low_complexity Low_complexity 1 21 0 303 336 8 8 chr3 177812327 177812458 -40224700 + (TATG)n Simple_repeat Simple_repeat 2 132 0 234 0 0 0 chr3 177812715 177812741 -40224417 + (TG)n Simple_repeat Simple_repeat 2 27 0 2879 234 76 48 chr3 177813010 177814658 -40222500 + L1MCb LINE L1 2 1685 -4851 23 33 0 0 chr3 177814911 177814941 -40222217 + AT_rich Low_complexity Low_complexity 1 30 0 219 139 0 0 chr3 177815043 177815079 -40222079 + (TTA)n Simple_repeat Simple_repeat 3 38 0 1457 143 35 8 chr3 177815237 177815495 -40221663 - L1PB1 LINE L1 -1 6150 5886 9248 243 34 27 chr3 177815495 177818806 -40218352 + L1PA13 LINE L1 1524 4863 -1934 1956 134 12 24 chr3 177818810 177819145 -40218013 + L1P4 LINE L1 5379 5709 -456 302 83 0 0 chr3 177819246 177819294 -40217864 + L1PA15 LINE L1 6105 6152 -13 182 33 67 0 chr3 177819301 177819331 -40217827 + (TATATG)n Simple_repeat Simple_repeat 4 35 0 22 35 0 0 chr3 177819678 177819707 -40217451 + AT_rich Low_complexity Low_complexity 1 29 0 1779 132 52 10 chr3 177819771 177820059 -40217099 + AluSg SINE Alu 1 300 -10 479 275 133 29 chr3 177820061 177820476 -40216682 + L1M4 LINE L1 4217 4674 -1472 723 270 36 68 chr3 177820565 177820817 -40216341 + MER52A LTR ERV1 1 244 -1511 6056 165 26 0 chr3 177820817 177821803 -40215355 + THE1B-int LTR MaLR 569 1580 0 2233 123 43 0 chr3 177821803 177822152 -40215006 + THE1B LTR MaLR 1 364 0 895 281 113 24 chr3 177822219 177822681 -40214477 - MLT1D LTR MaLR -2 503 1 234 312 75 21 chr3 177822862 177822955 -40214203 + MLT1I LTR MaLR 180 277 -132 962 306 77 36 chr3 177823015 177823750 -40213408 - L1ME LINE L1 -4276 1985 1281 2067 121 7 3 chr3 177823750 177824056 -40213102 - AluSc SINE Alu -2 307 1 962 306 77 36 chr3 177824056 177824639 -40212519 - L1ME LINE L1 -4980 1281 559 291 268 32 24 chr3 177825190 177825313 -40211845 + L1M3d LINE L1 3 126 -5765 233 143 0 95 chr3 177825996 177826059 -40211099 + L1M1 LINE L1 5416 5472 -830 2055 116 6 29 chr3 177828082 177828393 -40208765 - AluSg SINE Alu -6 304 1 28 0 0 0 chr3 177829293 177829321 -40207837 + AT_rich Low_complexity Low_complexity 1 28 0 29 90 0 0 chr3 177829491 177829569 -40207589 + AT_rich Low_complexity Low_complexity 1 78 0 1279 321 173 25 chr3 177830474 177831325 -40205833 + L2 LINE L2 1114 2090 -1224 1890 125 0 47 chr3 177833364 177833706 -40203452 - AluSq SINE Alu 0 328 1 21 57 0 0 chr3 177834640 177834675 -40202483 + AT_rich Low_complexity Low_complexity 1 35 0 302 186 196 49 chr3 177834942 177835044 -40202114 - L2 LINE L2 -1 3312 3196 24 91 0 0 chr3 177835044 177835110 -40202048 + AT_rich Low_complexity Low_complexity 1 66 0 269 338 0 0 chr3 177835182 177835262 -40201896 + L1ME2 LINE L1 6040 6119 -45 24 0 0 0 chr3 177835359 177835383 -40201775 + AT_rich Low_complexity Low_complexity 1 24 0 248 120 20 0 chr3 177835421 177835471 -40201687 + (TA)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr3 177835753 177835774 -40201384 + AT_rich Low_complexity Low_complexity 1 21 0 320 78 0 0 chr3 177836262 177836313 -40200845 - MADE1 DNA Mariner 0 80 30 1171 237 70 16 chr3 177837815 177838127 -40199031 - MER44D DNA MER2_type 0 609 11 23 0 0 0 chr3 177838395 177838418 -40198740 + AT_rich Low_complexity Low_complexity 1 23 0 717 262 25 60 chr3 177838842 177839189 -40197969 + L1MD2 LINE L1 5975 6328 -31 * 1078 244 100 18 chr3 177839188 177839209 -40197949 - L1 LINE L1 -3544 4021 4003 5119 146 30 0 chr3 177839209 177840346 -40196812 - L1PA13 LINE L1 -6 6157 5017 1078 244 100 18 chr3 177840346 177840871 -40196287 - L1 LINE L1 -3562 4003 3433 4361 125 79 74 chr3 177840874 177842248 -40194910 - pTR5 LTR ERV1 0 2438 743 4353 152 29 134 chr3 177842248 177842526 -40194632 - L1 LINE L1 -4129 3436 3130 897 92 0 0 chr3 177842526 177842645 -40194513 + AluSg/x SINE Alu 175 293 -17 4353 152 29 134 chr3 177842645 177842967 -40194191 - L1 LINE L1 -4435 3130 2776 186 71 0 0 chr3 177842967 177842995 -40194163 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 4353 152 29 134 chr3 177842995 177843660 -40193498 - L1 LINE L1 -4789 2776 2198 3255 269 51 60 chr3 177843654 177844724 -40192434 + L1M4 LINE L1 2740 3818 -2328 * 501 124 11 0 chr3 177844724 177844813 -40192345 + L1MA1 LINE L1 6213 6302 0 3255 269 51 60 chr3 177844813 177846051 -40191107 + L1M4 LINE L1 3818 5027 -1119 1648 228 92 7 chr3 177846605 177847030 -40190128 - MLT1C LTR MaLR -4 463 3 301 153 28 0 chr3 177847335 177847407 -40189751 + (TA)n Simple_repeat Simple_repeat 2 75 0 25 0 0 0 chr3 177847544 177847569 -40189589 + AT_rich Low_complexity Low_complexity 1 25 0 325 272 4 105 chr3 177848393 177848621 -40188537 - L1MC4 LINE L1 -85 7957 7753 236 261 122 17 chr3 177848993 177849108 -40188050 - LTR16A1 LTR ERVL -2 455 329 521 344 133 8 chr3 177850486 177850901 -40186257 - L2 LINE L2 -172 3141 2669 191 297 116 7 chr3 177850951 177851089 -40186069 + MIR SINE MIR 51 203 -59 21 36 0 0 chr3 177851234 177851262 -40185896 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr3 177851291 177851326 -40185832 + AT_rich Low_complexity Low_complexity 1 35 0 526 95 14 0 chr3 177851523 177851597 -40185561 - AluSp/q SINE Alu -22 291 217 365 297 124 22 chr3 177852161 177852346 -40184812 - MIR SINE MIR -57 205 2 189 0 0 0 chr3 177853150 177853171 -40183987 + (T)n Simple_repeat Simple_repeat 1 21 0 321 400 0 14 chr3 177853394 177853534 -40183624 + L2 LINE L2 2910 3047 -266 2069 168 57 7 chr3 177853773 177854179 -40182979 - MSTA LTR MaLR -2 426 1 338 143 38 0 chr3 177854731 177854836 -40182322 + (TA)n Simple_repeat Simple_repeat 2 110 0 210 37 0 0 chr3 177855694 177855721 -40181437 + (TCTCTG)n Simple_repeat Simple_repeat 4 30 0 245 145 24 36 chr3 177855804 177855887 -40181271 + (TTATA)n Simple_repeat Simple_repeat 5 86 0 22 35 0 0 chr3 177855907 177855936 -40181222 + AT_rich Low_complexity Low_complexity 1 29 0 2088 122 7 0 chr3 177856244 177856539 -40180619 - AluSp SINE Alu -16 297 1 1991 240 113 86 chr3 177857222 177858295 -40178863 + L1MC4 LINE L1 6107 7223 -819 358 195 0 0 chr3 177858295 177858371 -40178787 + L1MA3 LINE L1 6229 6305 0 1991 240 113 86 chr3 177858371 177859065 -40178093 + L1MC4 LINE L1 7223 7897 -145 22 56 0 0 chr3 177859077 177859113 -40178045 + AT_rich Low_complexity Low_complexity 1 36 0 2308 130 11 16 chr3 177859118 177859494 -40177664 + THE1C LTR MaLR 1 374 -1 216 216 0 0 chr3 177859539 177859590 -40177568 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 * 263 275 67 0 chr3 177859571 177859691 -40177467 + L1MC4 LINE L1 7902 8029 -13 537 191 38 0 chr3 177859980 177860085 -40177073 + L1M1 LINE L1 16 124 -7441 7174 158 37 12 chr3 177860092 177860165 -40176993 + L1M1 LINE L1 1100 1170 -6395 2590 99 0 6 chr3 177860165 177860520 -40176638 + THE1A LTR MaLR 1 353 -2 10622 113 23 1 chr3 177860522 177862068 -40175090 + THE1A-int LTR MaLR 1 1580 0 2329 118 11 3 chr3 177862068 177862416 -40174742 + THE1A LTR MaLR 1 351 -4 7174 158 37 12 chr3 177862416 177863552 -40173606 + L1M1 LINE L1 1169 2343 -5222 22 94 0 0 chr3 177863592 177863656 -40173502 + AT_rich Low_complexity Low_complexity 1 64 0 27 29 0 0 chr3 177864345 177864379 -40172779 + AT_rich Low_complexity Low_complexity 1 34 0 1967 173 27 5 chr3 177864506 177864875 -40172283 - MLT1B LTR MaLR 0 390 14 21 0 0 0 chr3 177864921 177864942 -40172216 + AT_rich Low_complexity Low_complexity 1 21 0 315 250 104 10 chr3 177865418 177865626 -40171532 - MLT1D LTR MaLR -196 271 61 599 362 46 21 chr3 177865732 177866058 -40171100 - LTR16A LTR ERVL -101 349 16 240 353 52 26 chr3 177866505 177866658 -40170500 + MER5A DNA MER1_type 21 177 -12 1034 244 119 29 chr3 177866693 177867317 -40169841 - L1MC/D LINE L1 -760 6277 5605 306 0 0 0 chr3 177867326 177867360 -40169798 + (TA)n Simple_repeat Simple_repeat 2 35 0 557 277 24 57 chr3 177867454 177867750 -40169408 - L1MC/D LINE L1 -1328 5613 5328 1536 289 96 34 chr3 177867756 177869031 -40168127 - L1MCc LINE L1 -4741 2200 840 495 251 132 47 chr3 177869374 177869716 -40167442 - L1MCc LINE L1 -6033 390 20 342 0 0 0 chr3 177869856 177869894 -40167264 + (CA)n Simple_repeat Simple_repeat 1 38 0 218 54 0 27 chr3 177869905 177869942 -40167216 + (GA)n Simple_repeat Simple_repeat 1 36 0 271 364 15 38 chr3 177870371 177870503 -40166655 + MER5A DNA MER1_type 61 189 0 6229 162 28 10 chr3 177870823 177871092 -40166066 + L1MA1 LINE L1 4178 4441 -1861 194 62 31 0 chr3 177871092 177871124 -40166034 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6229 162 28 10 chr3 177871124 177872400 -40164758 + L1MA1 LINE L1 4441 5692 -610 1527 203 43 27 chr3 177872400 177872769 -40164389 - THE1C LTR MaLR 0 375 1 8598 147 25 47 chr3 177872769 177874380 -40162778 - THE1C-int LTR MaLR 0 1580 4 1636 157 57 41 chr3 177874383 177874752 -40162406 - THE1C LTR MaLR 0 375 1 6229 162 28 10 chr3 177874752 177875277 -40161881 + L1MA1 LINE L1 5693 6298 -4 33 0 0 0 chr3 177875277 177875310 -40161848 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr3 177875594 177875617 -40161541 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr3 177875756 177875790 -40161368 + AT_rich Low_complexity Low_complexity 1 34 0 340 254 127 0 chr3 177877516 177877626 -40159532 + L1MC4 LINE L1 6580 6703 -1339 228 176 44 0 chr3 177877627 177877695 -40159463 + (TA)n Simple_repeat Simple_repeat 2 72 0 2545 145 86 0 chr3 177877698 177878174 -40158984 - L1PA16 LINE L1 -7 6159 5643 2077 158 3 3 chr3 177878175 177878522 -40158636 + L1PA16 LINE L1 5323 5669 -497 24 0 0 0 chr3 177878775 177878799 -40158359 + AT_rich Low_complexity Low_complexity 1 24 0 28 61 0 0 chr3 177879372 177879421 -40157737 + AT_rich Low_complexity Low_complexity 1 49 0 268 271 25 57 chr3 177879465 177879587 -40157571 - L1ME LINE L1 -520 5601 5484 26 64 0 0 chr3 177879932 177879979 -40157179 + AT_rich Low_complexity Low_complexity 1 47 0 490 310 181 25 chr3 177881793 177882158 -40155000 - L2 LINE L2 -68 3245 2824 301 289 0 0 chr3 177882468 177882565 -40154593 - L1ME LINE L1 -322 5848 5752 297 250 50 72 chr3 177882584 177882764 -40154394 - L1ME LINE L1 -398 5766 5591 650 235 0 15 chr3 177884766 177884902 -40152256 - MLT1D LTR MaLR -54 451 318 923 212 37 11 chr3 177884951 177885140 -40152018 - AluJo SINE Alu -30 282 89 412 192 13 0 chr3 177885143 177885221 -40151937 - L1MC1 LINE L1 -9 6324 6246 8447 204 52 87 chr3 177885391 177885933 -40151225 + L1MA2 LINE L1 17 576 -6989 1498 117 0 0 chr3 177885933 177886138 -40151020 + AluSg SINE Alu 1 205 -105 8447 204 52 87 chr3 177886138 177887703 -40149455 + L1MA2 LINE L1 576 2369 -5196 2132 67 11 0 chr3 177887703 177887972 -40149186 - AluY SINE Alu -18 293 22 8447 204 52 87 chr3 177887972 177888874 -40148284 + L1MA2 LINE L1 2369 3301 -4264 12167 184 38 23 chr3 177888910 177890803 -40146355 + L1MA2 LINE L1 3844 5706 -2017 1566 192 20 13 chr3 177890803 177891105 -40146053 + AluSx SINE Alu 1 304 -8 12167 184 38 23 chr3 177891105 177892986 -40144172 + L1MA2 LINE L1 5706 7683 -40 1548 132 41 12 chr3 177892986 177893228 -40143930 + AluSg SINE Alu 1 249 -61 2442 71 3 0 chr3 177893468 177893778 -40143380 - AluY SINE Alu 0 311 1 435 305 93 53 chr3 177894110 177895911 -40141247 + L1MEc LINE L1 2223 4052 -2163 2014 293 51 47 chr3 177896048 177897005 -40140153 + L1MCb LINE L1 69 1029 -5016 436 180 22 0 chr3 177896999 177897088 -40140070 - L1M4 LINE L1 -1350 5499 5409 * 1047 226 43 9 chr3 177897088 177897437 -40139721 + L1 LINE L1 2921 3281 -2865 2797 227 59 17 chr3 177897449 177898238 -40138920 - L1PA15-16 LINE L1 -3226 3623 2803 690 265 42 44 chr3 177898233 177898640 -40138518 - L1M4 LINE L1 -2116 4733 4328 * 21 36 0 0 chr3 177898666 177898694 -40138464 + AT_rich Low_complexity Low_complexity 1 28 0 44 70 0 0 chr3 177898735 177898821 -40138337 + AT_rich Low_complexity Low_complexity 1 86 0 21 36 0 0 chr3 177899181 177899209 -40137949 + AT_rich Low_complexity Low_complexity 1 28 0 2281 108 0 0 chr3 177899209 177899514 -40137644 + AluSg SINE Alu 1 305 -5 6461 123 21 13 chr3 177899609 177900549 -40136609 - L1MA1 LINE L1 -10 6292 5337 2349 42 42 3 chr3 177900549 177900835 -40136323 - AluY SINE Alu -14 297 1 6461 123 21 13 chr3 177900835 177901012 -40136146 - L1MA1 LINE L1 -965 5337 5163 22 80 0 0 chr3 177901264 177901314 -40135844 + AT_rich Low_complexity Low_complexity 1 50 0 5806 25 0 0 chr3 177901559 177902234 -40134924 - L1PA3 LINE L1 -2 6153 5479 5358 30 0 3 chr3 177902234 177902979 -40134179 + L1PA3 LINE L1 4734 5476 -679 522 0 0 0 chr3 177903195 177903253 -40133905 + (GGAA)n Simple_repeat Simple_repeat 4 61 0 192 158 0 0 chr3 177903393 177903431 -40133727 + A-rich Low_complexity Low_complexity 1 38 0 378 148 16 0 chr3 177904578 177904639 -40132519 - U7 snRNA snRNA -1 62 1 3263 110 8 0 chr3 177904705 177905177 -40131981 - L1P LINE L1 -1804 4342 3867 7619 20 0 0 chr3 177905215 177906453 -40130705 - L1PA2 LINE L1 -2 6153 4912 2498 30 0 0 chr3 177906453 177906753 -40130405 + L1PA2 LINE L1 4609 4908 -1238 * 3487 134 22 2 chr3 177906749 177907332 -40129826 - L1P LINE L1 -2248 3898 3304 2408 109 0 0 chr3 177907332 177907675 -40129483 + L1PA8 LINE L1 5823 6172 0 307 319 9 9 chr3 177908366 177908479 -40128679 + MER81 DNA DNA 2 114 0 220 254 45 0 chr3 177908906 177908973 -40128185 + MIR SINE MIR 183 252 -10 28 48 0 0 chr3 177909643 177909685 -40127473 + AT_rich Low_complexity Low_complexity 1 42 0 24 67 0 0 chr3 177909778 177909823 -40127335 + AT_rich Low_complexity Low_complexity 1 45 0 548 296 77 70 chr3 177910273 177910539 -40126619 - L1MEd LINE L1 -4820 1309 1046 2102 143 48 11 chr3 177910539 177910890 -40126268 + THE1B LTR MaLR 1 364 0 548 296 77 70 chr3 177910890 177911226 -40125932 - L1MEd LINE L1 -5083 1046 705 212 234 0 16 chr3 177911448 177911512 -40125646 + CT-rich Low_complexity Low_complexity 4 66 0 635 196 17 17 chr3 177911541 177911720 -40125438 + CT-rich Low_complexity Low_complexity 1 179 0 37 23 0 0 chr3 177912500 177912544 -40124614 + AT_rich Low_complexity Low_complexity 1 44 0 11548 31 1 0 chr3 177912701 177914865 -40122293 + L1PA3 LINE L1 3989 6152 -3 21 0 0 0 chr3 177915145 177915166 -40121992 + AT_rich Low_complexity Low_complexity 1 21 0 2338 80 3 0 chr3 177916610 177916911 -40120247 - AluY SINE Alu -7 304 3 597 207 82 0 chr3 177917181 177917316 -40119842 - MSTA LTR MaLR 0 428 283 660 256 24 12 chr3 177918372 177918540 -40118618 - AluJo SINE Alu -24 288 119 4980 174 92 4 chr3 177918665 177919603 -40117555 - LTR28 LTR ERV1 0 1020 1 6255 154 21 5 chr3 177919651 177920899 -40116259 - L1MA2 LINE L1 0 6304 5022 279 0 0 0 chr3 177920899 177920930 -40116228 + (TG)n Simple_repeat Simple_repeat 2 32 0 6255 154 21 5 chr3 177920930 177921121 -40116037 - L1MA2 LINE L1 -1282 5022 4836 802 321 70 0 chr3 177921822 177922196 -40114962 + L1ME1 LINE L1 5704 6103 -63 1768 93 33 83 chr3 177922590 177922892 -40114266 + AluSg SINE Alu 1 287 -23 246 217 152 33 chr3 177923399 177923491 -40113667 - MIR SINE MIR -78 184 82 225 0 0 0 chr3 177924302 177924327 -40112831 + (CA)n Simple_repeat Simple_repeat 2 26 0 509 304 27 16 chr3 177924389 177924646 -40112512 - LTR37B LTR ERV1 -5 463 204 1715 185 13 50 chr3 177927214 177927517 -40109641 - MLT1A1 LTR MaLR 0 365 77 925 62 86 0 chr3 177927517 177927645 -40109513 + MER85 DNA T2_type 1 139 0 1715 185 13 50 chr3 177927645 177927720 -40109438 - MLT1A1 LTR MaLR -288 77 1 243 0 0 0 chr3 177928259 177928286 -40108872 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 730 324 73 22 chr3 177928556 177928911 -40108247 - LTR16C LTR ERVL -48 443 71 245 213 49 0 chr3 177929320 177929381 -40107777 - MLT1K LTR MaLR -2 586 523 1186 215 73 39 chr3 177929522 177929852 -40107306 + L1ME1 LINE L1 5821 6161 -5 33 43 0 0 chr3 177929861 177929908 -40107250 + AT_rich Low_complexity Low_complexity 1 47 0 389 317 136 39 chr3 177930720 177931029 -40106129 - L1MC/D LINE L1 -2177 5631 5293 192 247 14 82 chr3 177931209 177931282 -40105876 - MIR SINE MIR -105 157 90 32 43 0 0 chr3 177931398 177931444 -40105714 + AT_rich Low_complexity Low_complexity 1 46 0 321 277 9 22 chr3 177932208 177932442 -40104716 + GA-rich Low_complexity Low_complexity 1 230 0 234 0 0 0 chr3 177933879 177933905 -40103253 + (T)n Simple_repeat Simple_repeat 1 26 0 28 29 0 0 chr3 177934255 177934290 -40102868 + AT_rich Low_complexity Low_complexity 1 35 0 718 203 6 28 chr3 177934291 177934449 -40102709 + L1MA4 LINE L1 4220 4376 -1770 1837 146 0 31 chr3 177934449 177934813 -40102345 + AluSx SINE Alu 4 358 0 718 203 6 28 chr3 177934813 177934830 -40102328 + L1MA4 LINE L1 4376 4392 -1754 5496 169 41 17 chr3 177934852 177936496 -40100662 + L1MA4 LINE L1 4612 6294 -6 25 31 0 0 chr3 177936497 177936529 -40100629 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr3 177936702 177936738 -40100420 + AT_rich Low_complexity Low_complexity 1 36 0 1076 56 7 0 chr3 177936925 177937067 -40100091 + L1PA8 LINE L1 6027 6169 -3 604 221 270 18 chr3 177937437 177937659 -40099499 + LTR40a LTR ERVL 242 519 0 491 310 25 21 chr3 177937659 177937901 -40099257 + L1MC4a LINE L1 6603 6845 -963 * 589 232 95 37 chr3 177937893 177938134 -40099024 + L1MC4 LINE L1 7344 7598 -444 260 365 0 10 chr3 177988720 177988816 -40048342 + L2 LINE L2 2946 3040 -273 1023 84 15 0 chr3 177990350 177990481 -40046677 + AluSg SINE Alu 1 133 -177 25 0 0 0 chr3 177990742 177990767 -40046391 + AT_rich Low_complexity Low_complexity 1 25 0 242 76 61 136 chr3 177990836 177990902 -40046256 + L1MCa LINE L1 2006 2066 -4360 200 132 0 26 chr3 177991107 177991145 -40046013 + (TAAAAA)n Simple_repeat Simple_repeat 5 41 0 216 111 0 0 chr3 177991145 177991181 -40045977 + (GA)n Simple_repeat Simple_repeat 2 37 0 357 356 86 6 chr3 177991777 177991951 -40045207 + MIR SINE MIR 32 219 -43 1371 141 48 0 chr3 177992386 177992613 -40044545 - MER7A DNA MER2_type -1 345 108 455 207 35 0 chr3 177992918 177993005 -40044153 - MER7A DNA MER2_type -258 88 1 39 38 0 0 chr3 177993450 177993503 -40043655 + AT_rich Low_complexity Low_complexity 1 53 0 24 77 0 0 chr3 177993663 177993715 -40043443 + AT_rich Low_complexity Low_complexity 1 52 0 993 220 48 0 chr3 177993988 177994215 -40042943 - L1 LINE L1 -1847 4299 4062 26 0 0 0 chr3 177994289 177994315 -40042843 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr3 177994493 177994515 -40042643 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr3 177994709 177994750 -40042408 + AT_rich Low_complexity Low_complexity 1 41 0 296 71 24 0 chr3 177994997 177995039 -40042119 - L1PA16 LINE L1 -9 6157 6115 210 71 0 0 chr3 177995040 177995068 -40042090 + (TC)n Simple_repeat Simple_repeat 1 28 0 433 219 134 17 chr3 177995072 177995191 -40041967 - FLAM_C SINE Alu 0 133 1 1903 160 48 12 chr3 177995191 177995528 -40041630 - L1PA16 LINE L1 -43 6123 5775 3089 189 58 56 chr3 177995669 177996999 -40040159 - L1ME4a LINE L1 -266 5855 4542 289 326 88 56 chr3 177997003 177997343 -40039815 + L2 LINE L2 2456 2806 -508 929 56 0 8 chr3 177997445 177997570 -40039588 + (TTCC)n Simple_repeat Simple_repeat 3 126 0 2261 69 0 3 chr3 177997570 177997858 -40039300 - AluY SINE Alu -24 287 1 23 0 0 0 chr3 177998007 177998030 -40039128 + AT_rich Low_complexity Low_complexity 1 23 0 219 119 45 0 chr3 177998299 177998366 -40038792 + (TA)n Simple_repeat Simple_repeat 1 70 0 211 366 62 31 chr3 177998504 177998665 -40038493 - MIR SINE MIR -52 210 45 688 242 106 35 chr3 177999955 178000211 -40036947 - L1ME1 LINE L1 -39 6127 5854 455 276 55 5 chr3 178000216 178000415 -40036743 + L1M4 LINE L1 5074 5282 -864 4071 178 7 22 chr3 178000433 178001286 -40035872 + L1MA3 LINE L1 5466 6305 0 1727 196 3 0 chr3 178001513 178001939 -40035219 - AluJb SINE Alu 0 427 1 23 0 0 0 chr3 178002230 178002253 -40034905 + AT_rich Low_complexity Low_complexity 1 23 0 873 232 0 5 chr3 178002314 178002499 -40034659 - MLT1B LTR MaLR -4 386 203 479 139 47 23 chr3 178002503 178002589 -40034569 - MLT1B LTR MaLR -302 88 1 21 57 0 0 chr3 178002937 178002972 -40034186 + AT_rich Low_complexity Low_complexity 1 35 0 497 270 26 0 chr3 178005060 178005212 -40031946 - L1MD2 LINE L1 -10 6349 6194 1656 273 34 68 chr3 178005224 178006274 -40030884 - L1MDa LINE L1 -5425 1115 1 27 49 0 0 chr3 178006765 178006806 -40030352 + AT_rich Low_complexity Low_complexity 1 41 0 7158 151 22 12 chr3 178006809 178008097 -40029061 + HSMAR2 DNA Mariner 2 1302 0 210 118 0 0 chr3 178008109 178008143 -40029015 + (TATG)n Simple_repeat Simple_repeat 1 34 0 21 82 0 0 chr3 178009138 178009187 -40027971 + AT_rich Low_complexity Low_complexity 1 49 0 4016 155 49 10 chr3 178009729 178010437 -40026721 + MSTA-int LTR MaLR 845 1580 0 1983 157 133 5 chr3 178010437 178010814 -40026344 + MSTA LTR MaLR 1 425 -3 258 32 0 0 chr3 178012131 178012162 -40024996 + (TG)n Simple_repeat Simple_repeat 2 32 0 204 40 0 0 chr3 178012161 178012186 -40024972 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 5095 142 50 16 chr3 178012947 178013856 -40023302 - L1PA16 LINE L1 -1 6165 5227 202 121 33 66 chr3 178013968 178014059 -40023099 + (TATAA)n Simple_repeat Simple_repeat 1 88 0 26 30 0 0 chr3 178014651 178014684 -40022474 + AT_rich Low_complexity Low_complexity 1 33 0 1181 42 0 0 chr3 178014775 178014919 -40022239 - L1PA7 LINE L1 -7 6147 6004 3887 220 39 3 chr3 178015217 178016166 -40020992 - L1 LINE L1 -748 5398 4416 8140 29 0 0 chr3 178016172 178017907 -40019251 - L1PA2 LINE L1 0 6155 4421 4643 11 8 0 chr3 178017907 178018441 -40018717 + L1PA2 LINE L1 3874 4411 -1735 286 258 16 0 chr3 178018454 178018516 -40018642 - MER2 DNA MER2_type 0 345 283 1678 200 44 26 chr3 178018567 178019022 -40018136 - L1 LINE L1 -1722 4424 3962 2577 179 33 20 chr3 178019022 178019412 -40017746 + L1MA9 LINE L1 5404 5804 -508 315 0 0 0 chr3 178019412 178019447 -40017711 + (CA)n Simple_repeat Simple_repeat 1 35 0 2577 179 33 20 chr3 178019447 178019603 -40017555 + L1MA9 LINE L1 5804 5957 -355 940 126 60 0 chr3 178019728 178019895 -40017263 - HERVL-A2 LTR ERVL -58 5596 5420 * 4804 83 9 0 chr3 178019887 178020536 -40016622 - HERVL-A2 LTR ERVL -4999 655 1 318 57 189 0 chr3 178020540 178020593 -40016565 - MLT2A2 LTR ERVL -8 445 383 2759 128 37 0 chr3 178020621 178021028 -40016130 - MLT2A2 LTR ERVL -31 422 1 25 51 0 0 chr3 178021049 178021088 -40016070 + AT_rich Low_complexity Low_complexity 1 39 0 217 347 20 46 chr3 178021157 178021353 -40015805 - L2 LINE L2 -1086 2228 2038 15258 48 6 1 chr3 178022605 178025288 -40011870 + L1PA5 LINE L1 3455 6148 -6 25 0 0 0 chr3 178026522 178026547 -40010611 + AT_rich Low_complexity Low_complexity 1 25 0 2689 26 0 0 chr3 178026999 178027311 -40009847 - AluYb8 SINE Alu -6 312 1 22 0 0 0 chr3 178027630 178027652 -40009506 + AT_rich Low_complexity Low_complexity 1 22 0 1724 171 0 0 chr3 178027656 178027942 -40009216 - AluSx SINE Alu -26 286 1 195 69 0 0 chr3 178028121 178028150 -40009008 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 234 192 0 0 chr3 178028503 178028555 -40008603 + (CA)n Simple_repeat Simple_repeat 2 53 0 239 54 27 0 chr3 178028641 178028678 -40008480 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 2024 189 36 19 chr3 178029668 178030085 -40007073 - MSTB LTR MaLR 0 426 3 2833 188 39 0 chr3 178030087 178030598 -40006560 - MSTB-int LTR MaLR 0 1651 1121 191 351 101 0 chr3 178030920 178031068 -40006090 + MIR SINE MIR 84 246 -16 22 56 0 0 chr3 178031682 178031718 -40005440 + AT_rich Low_complexity Low_complexity 1 36 0 796 59 0 0 chr3 178032411 178032513 -40004645 - L1P LINE L1 -3078 3068 2967 24 0 0 0 chr3 178032583 178032607 -40004551 + AT_rich Low_complexity Low_complexity 1 24 0 403 304 152 0 chr3 178032827 178033031 -40004127 + LTR16C LTR ERVL 257 491 0 278 259 0 9 chr3 178033454 178033566 -40003592 + (TA)n Simple_repeat Simple_repeat 1 111 0 2035 226 50 6 chr3 178033873 178034356 -40002802 - L1MC3 LINE L1 -17 7768 7265 1561 250 93 58 chr3 178034495 178035752 -40001406 - L1MCb LINE L1 -4538 2207 707 1694 225 51 18 chr3 178035795 178036248 -40000910 - L1MB7 LINE L1 -38 6146 5679 420 207 105 63 chr3 178036270 178036433 -40000725 - L1MCa LINE L1 -5326 894 569 444 138 0 0 chr3 178036498 178036563 -40000595 - THE1C LTR MaLR 0 375 311 * 1143 222 162 31 chr3 178036561 178037017 -40000141 - MER52A LTR ERV1 -687 591 221 873 193 62 5 chr3 178037033 178037225 -39999933 - MER49 LTR ERV1 -716 207 5 189 0 0 0 chr3 178037867 178037888 -39999270 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 207 0 0 0 chr3 178039143 178039166 -39997992 + (T)n Simple_repeat Simple_repeat 1 23 0 285 29 0 0 chr3 178039364 178039398 -39997760 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr3 178039641 178039662 -39997496 + AT_rich Low_complexity Low_complexity 1 21 0 184 397 83 0 chr3 178039693 178039814 -39997344 + MIR3 SINE MIR 29 159 -49 24 0 0 0 chr3 178040020 178040044 -39997114 + AT_rich Low_complexity Low_complexity 1 24 0 1975 161 3 0 chr3 178040050 178040360 -39996798 + AluSx SINE Alu 1 311 -1 228 160 229 97 chr3 178040679 178040823 -39996335 - L1ME LINE L1 -684 5480 5318 2037 173 52 38 chr3 178043775 178044197 -39992961 + MSTC LTR MaLR 1 428 0 3758 221 68 53 chr3 178044233 178045395 -39991763 + MSTC-int LTR MaLR 37 1218 -362 254 158 0 0 chr3 178045392 178045430 -39991728 - THE1C-int LTR MaLR -625 955 918 * 3872 116 0 98 chr3 178045430 178045723 -39991435 - THE1C-int LTR MaLR -927 653 333 1846 133 46 0 chr3 178045723 178046008 -39991150 - AluSq SINE Alu -15 298 1 3872 116 0 98 chr3 178046008 178046437 -39990721 - THE1C-int LTR MaLR -1247 333 2 1496 198 52 30 chr3 178046438 178046850 -39990308 - THE1C LTR MaLR 0 428 1 25 75 0 0 chr3 178046855 178046908 -39990250 + AT_rich Low_complexity Low_complexity 1 53 0 496 292 136 38 chr3 178047020 178047284 -39989874 + MER97b DNA MER1_type? 320 609 -444 13186 202 58 9 chr3 178047597 178051211 -39985947 - L1PB1 LINE L1 -1 6866 2811 396 0 0 0 chr3 178051211 178051255 -39985903 + (TA)n Simple_repeat Simple_repeat 2 45 0 13186 202 58 9 chr3 178051255 178053063 -39984095 - L1PB1 LINE L1 -4056 2811 1093 2392 253 156 11 chr3 178053067 178053980 -39983178 - L1PB1 LINE L1 -5818 1045 1 951 310 36 29 chr3 178057268 178057687 -39979471 + L1MEc LINE L1 215 636 -5760 * 3645 196 46 4 chr3 178057681 178058532 -39978626 + L1P5 LINE L1 4411 5330 -826 192 40 0 0 chr3 178058532 178058557 -39978601 + (CAA)n Simple_repeat Simple_repeat 1 25 0 3645 196 46 4 chr3 178058557 178058916 -39978242 + L1P5 LINE L1 5330 5672 -484 392 143 14 0 chr3 178058942 178059012 -39978146 - L1 LINE L1 -1520 4626 4556 660 152 0 0 chr3 178059017 178059122 -39978036 + L1PB4 LINE L1 6039 6143 -13 418 293 54 34 chr3 178059144 178059349 -39977809 + L1MEc LINE L1 639 847 -5549 * 1559 268 44 54 chr3 178059348 178059876 -39977282 + L1M4 LINE L1 2944 3461 -2685 1153 241 60 35 chr3 178059876 178060274 -39976884 - MER92A LTR ERV1 0 412 5 1559 268 44 54 chr3 178060274 178060656 -39976502 + L1M4 LINE L1 3461 3845 -2301 8538 213 40 28 chr3 178060676 178061368 -39975790 + L1MC3 LINE L1 5525 6208 -1577 2205 229 25 14 chr3 178061368 178061918 -39975240 - LTR38 LTR ERV1 0 556 1 8538 213 40 28 chr3 178061918 178063453 -39973705 + L1MC3 LINE L1 6208 7777 -8 285 225 42 42 chr3 178063439 178063559 -39973599 + L1M4 LINE L1 3829 3948 -2198 * 441 0 0 0 chr3 178063605 178063654 -39973504 + (TG)n Simple_repeat Simple_repeat 2 50 0 183 129 0 0 chr3 178064716 178064747 -39972411 + (CA)n Simple_repeat Simple_repeat 2 32 0 1359 215 95 34 chr3 178064823 178065172 -39971986 + MLT1A2 LTR MaLR 1 370 -4 315 0 0 0 chr3 178065447 178065482 -39971676 + (TG)n Simple_repeat Simple_repeat 2 36 0 7173 157 19 25 chr3 178065885 178066226 -39970932 + HSMAR2 DNA Mariner 1 342 -960 349 117 0 17 chr3 178066226 178066286 -39970872 - L1PB3 LINE L1 -7 6147 6089 7173 157 19 25 chr3 178066286 178067247 -39969911 + HSMAR2 DNA Mariner 342 1296 -6 1814 171 0 0 chr3 178067962 178068261 -39968897 - AluSx SINE Alu -13 299 1 22 0 0 0 chr3 178069675 178069697 -39967461 + AT_rich Low_complexity Low_complexity 1 22 0 419 35 18 0 chr3 178070185 178070242 -39966916 + (TG)n Simple_repeat Simple_repeat 1 58 0 1364 197 29 42 chr3 178070384 178070693 -39966465 + AluJo SINE Alu 1 305 -7 26 50 0 0 chr3 178070731 178070771 -39966387 + AT_rich Low_complexity Low_complexity 1 40 0 573 264 44 48 chr3 178070846 178070993 -39966165 + L1ME3 LINE L1 2946 3093 -3053 3827 114 9 51 chr3 178070993 178071625 -39965533 + LTR14B LTR ERVK 3 608 0 573 264 44 48 chr3 178071625 178071750 -39965408 + L1ME3 LINE L1 3093 3217 -2929 1079 253 61 55 chr3 178071825 178072320 -39964838 + L1ME3 LINE L1 5627 6124 -38 301 331 40 47 chr3 178072603 178072751 -39964407 + L1ME LINE L1 5531 5677 -444 26 64 0 0 chr3 178072784 178072831 -39964327 + AT_rich Low_complexity Low_complexity 1 47 0 26 30 0 0 chr3 178073749 178073782 -39963376 + AT_rich Low_complexity Low_complexity 1 33 0 430 168 0 20 chr3 178073820 178073921 -39963237 + CT-rich Low_complexity Low_complexity 2 100 0 2792 221 130 39 chr3 178075408 178075705 -39961453 - L1MC3 LINE L1 -392 7393 7124 450 53 0 0 chr3 178075705 178075762 -39961396 + (TA)n Simple_repeat Simple_repeat 2 58 0 2792 221 130 39 chr3 178075762 178076332 -39960826 - L1MC3 LINE L1 -661 7124 6447 4707 139 31 9 chr3 178076332 178077095 -39960063 - LTR17 LTR ERV1 0 780 1 2347 55 3 0 chr3 178077095 178077386 -39959772 - HERV17 LTR ERV1 0 8626 8335 286 77 0 0 chr3 178077376 178077415 -39959743 - HERV17 LTR ERV1 -1078 7548 7510 * 27170 65 2 6 chr3 178077408 178080868 -39956290 - HERV17 LTR ERV1 -2607 6019 2574 3383 84 13 0 chr3 178080862 178081324 -39955834 - HERV17 LTR ERV1 -6622 2004 1537 * 5289 103 33 9 chr3 178081505 178082314 -39954844 - HERV17 LTR ERV1 -7089 1537 709 1608 67 0 53 chr3 178082580 178082805 -39954353 - HERV17 LTR ERV1 -7917 709 497 585 94 0 12 chr3 178082798 178082883 -39954275 - LTR17 LTR ERV1 -696 84 1 * 2763 174 39 23 chr3 178083011 178083609 -39953549 + Tigger3(Golem) DNA MER2_type 2423 3029 0 30 77 0 0 chr3 178085682 178085747 -39951411 + AT_rich Low_complexity Low_complexity 1 65 0 22 56 0 0 chr3 178087263 178087299 -39949859 + AT_rich Low_complexity Low_complexity 1 36 0 4123 192 33 15 chr3 178087299 178088406 -39948752 - L1MB7 LINE L1 -16 6168 4992 722 330 109 28 chr3 178088890 178089686 -39947472 + L2 LINE L2 2450 3312 -1 286 81 0 0 chr3 178089760 178089841 -39947317 - AluSp/q SINE Alu 0 328 248 243 329 66 20 chr3 178090447 178090599 -39946559 + MIR SINE MIR 68 226 -36 1840 128 138 54 chr3 178090642 178090995 -39946163 + MSTA LTR MaLR 1 392 -36 2016 128 0 0 chr3 178090995 178091413 -39945745 - AluSx SINE Alu 0 418 1 1840 128 138 54 chr3 178091413 178091449 -39945709 + MSTA LTR MaLR 392 424 -4 282 283 66 75 chr3 178093158 178093625 -39943533 + L1MEd LINE L1 749 1211 -4908 24 32 0 0 chr3 178093680 178093711 -39943447 + AT_rich Low_complexity Low_complexity 1 31 0 244 237 0 0 chr3 178093926 178093985 -39943173 + L1ME LINE L1 353 411 -5961 28 48 0 0 chr3 178093985 178094027 -39943131 + AT_rich Low_complexity Low_complexity 1 42 0 254 274 77 29 chr3 178094723 178095139 -39942019 + L1ME LINE L1 1029 1411 -4973 311 336 5 5 chr3 178095211 178095422 -39941736 + L1ME LINE L1 1774 1984 -4579 421 297 90 29 chr3 178095438 178096071 -39941087 + L1ME LINE L1 2042 2673 -3709 1809 122 42 18 chr3 178096083 178096369 -39940789 + AluSc SINE Alu 1 293 -16 636 275 110 21 chr3 178096571 178097091 -39940067 + L1ME LINE L1 3070 3635 -2747 566 256 79 0 chr3 178097165 178097329 -39939829 - MER58A DNA MER1_type -3 221 45 4196 187 93 104 chr3 178097346 178098373 -39938785 + L1MC1 LINE L1 388 1425 -5001 1978 143 3 0 chr3 178098373 178098680 -39938478 + AluSx SINE Alu 3 310 -2 4196 187 93 104 chr3 178098680 178099102 -39938056 + L1MC1 LINE L1 1425 1820 -4606 1906 116 4 0 chr3 178099102 178099369 -39937789 + AluSp SINE Alu 45 312 -1 4196 187 93 104 chr3 178099369 178099544 -39937614 + L1MC1 LINE L1 1820 1995 -4431 * 4960 238 43 31 chr3 178099541 178102251 -39934907 + L1MC1 LINE L1 3705 6439 -174 2251 218 68 134 chr3 178102251 178103425 -39933733 - MER52A LTR ERV1 0 1755 659 757 211 12 18 chr3 178103431 178103602 -39933556 + L1MC1 LINE L1 6444 6613 0 234 62 0 0 chr3 178105206 178105238 -39931920 + (T)n Simple_repeat Simple_repeat 1 32 0 1498 143 0 0 chr3 178105245 178105462 -39931696 - AluSx SINE Alu -95 217 1 635 253 28 51 chr3 178105479 178105762 -39931396 + L1M4 LINE L1 4187 4471 -1675 245 315 11 0 chr3 178105868 178105942 -39931216 + MIR SINE MIR 35 111 -104 1602 201 78 88 chr3 178105987 178106484 -39930674 - MLT1D LTR MaLR -11 494 3 274 236 56 0 chr3 178106587 178106748 -39930410 + (TA)n Simple_repeat Simple_repeat 2 171 0 24 32 0 0 chr3 178106774 178106805 -39930353 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr3 178108407 178108429 -39928729 + AT_rich Low_complexity Low_complexity 1 22 0 191 318 182 20 chr3 178108659 178108807 -39928351 + MIR SINE MIR 18 189 -73 27 0 0 0 chr3 178109502 178109529 -39927629 + AT_rich Low_complexity Low_complexity 1 27 0 836 235 14 27 chr3 178109848 178110069 -39927089 + MER20 DNA MER1_type 2 219 0 420 305 111 42 chr3 178110982 178111530 -39925628 + HAL1b LINE L1 348 933 -415 25 31 0 0 chr3 178113427 178113459 -39923699 + AT_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr3 178114391 178114417 -39922741 + AT_rich Low_complexity Low_complexity 1 26 0 222 118 0 0 chr3 178115069 178115103 -39922055 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1469 140 0 0 chr3 178115105 178115319 -39921839 - AluSg/x SINE Alu -25 285 72 21 0 0 0 chr3 178116013 178116034 -39921124 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 178116929 178116952 -39920206 + AT_rich Low_complexity Low_complexity 1 23 0 360 321 172 3 chr3 178117410 178117771 -39919387 - L1ME LINE L1 -457 5713 5292 2548 280 40 10 chr3 178118020 178118724 -39918434 + L1MA4 LINE L1 1217 1941 -5555 2207 281 61 18 chr3 178119005 178120629 -39916529 + L1MA4 LINE L1 2259 3860 -3705 807 244 24 5 chr3 178120639 178120844 -39916314 + MER2 DNA MER2_type 2 210 -135 1347 259 13 15 chr3 178120951 178121349 -39915809 + L1MA4 LINE L1 3877 4273 -3292 785 243 46 0 chr3 178121350 178121523 -39915635 - Tigger3(Golem) DNA MER2_type 0 3037 2857 746 211 110 0 chr3 178121523 178121741 -39915417 + L1MA4 LINE L1 4291 4532 -3033 * 2452 208 31 3 chr3 178121738 178122309 -39914849 + L1MA4 LINE L1 5141 5727 -1838 5368 37 1 0 chr3 178122309 178122959 -39914199 + L1PA4 LINE L1 5505 6155 0 1113 149 131 9 chr3 178122959 178123173 -39913985 + MSTA LTR MaLR 189 428 0 3392 189 46 4 chr3 178123173 178123915 -39913243 + L1MA4 LINE L1 6776 7548 -171 900 223 17 22 chr3 178123943 178124298 -39912860 - MSTB LTR MaLR 0 428 1 7994 200 25 13 chr3 178124298 178125389 -39911769 - MSTB-int LTR MaLR 0 1651 533 2113 133 0 0 chr3 178125389 178125691 -39911467 + AluSc SINE Alu 1 302 -7 7994 200 25 13 chr3 178125691 178126231 -39910927 - MSTB-int LTR MaLR -1118 533 1 1892 191 106 5 chr3 178126231 178126618 -39910540 - MSTB LTR MaLR 0 426 1 662 141 12 0 chr3 178126618 178126753 -39910405 + L1MA3 LINE L1 6158 6296 -4 39 22 0 0 chr3 178126756 178126802 -39910356 + AT_rich Low_complexity Low_complexity 1 46 0 1022 245 4 15 chr3 178126909 178126957 -39910201 + L1P LINE L1 4282 4329 -1817 2731 13 0 0 chr3 178126957 178127260 -39909898 - AluY SINE Alu -8 303 1 1022 245 4 15 chr3 178127260 178127480 -39909678 + L1P LINE L1 4329 4547 -1599 463 305 58 28 chr3 178127621 178128021 -39909137 - L1M4 LINE L1 -1072 5074 4663 25 31 0 0 chr3 178128279 178128311 -39908847 + AT_rich Low_complexity Low_complexity 1 32 0 243 170 0 0 chr3 178128882 178128929 -39908229 + (TG)n Simple_repeat Simple_repeat 1 47 0 297 256 122 12 chr3 178129021 178129103 -39908055 + MLT1H1 LTR MaLR 91 181 -374 1913 281 35 27 chr3 178129521 178130161 -39906997 + L1PA12 LINE L1 8 1466 -6115 1954 109 0 32 chr3 178130202 178130487 -39906671 - AluSx SINE Alu -32 280 5 472 365 21 0 chr3 178130490 178130682 -39906476 + L1PA14 LINE L1 1181 1376 -6205 1084 272 99 51 chr3 178131988 178132208 -39904950 - L1MC4a LINE L1 -912 6896 6688 207 0 0 0 chr3 178132208 178132231 -39904927 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1084 272 99 51 chr3 178132231 178132789 -39904369 - L1MC4a LINE L1 -1120 6688 6081 21 36 0 0 chr3 178132899 178132927 -39904231 + AT_rich Low_complexity Low_complexity 1 28 0 1801 321 28 30 chr3 178133521 178134281 -39902877 + L1M3b LINE L1 33 790 -5523 7593 236 144 22 chr3 178134810 178135416 -39901742 + L1PA14 LINE L1 2001 2532 -5061 5495 116 33 9 chr3 178135416 178136632 -39900526 + L1PA14 LINE L1 6365 7599 0 7593 236 144 22 chr3 178136632 178139518 -39897640 + L1PA14 LINE L1 2532 5065 -2528 1736 184 39 6 chr3 178139518 178139854 -39897304 - MER7A DNA MER2_type -1 345 1 7593 236 144 22 chr3 178139854 178139978 -39897180 + L1PA14 LINE L1 5065 5173 -2420 3706 204 13 17 chr3 178139978 178140796 -39896362 - L1MA7 LINE L1 -1 6290 5476 7593 236 144 22 chr3 178140796 178140825 -39896333 + L1PA14 LINE L1 5173 5197 -2396 4089 27 0 0 chr3 178140825 178141300 -39895858 - L1PA3 LINE L1 -5 6150 5676 7593 236 144 22 chr3 178141300 178142446 -39894712 + L1PA3 LINE L1 5197 7114 -479 921 175 6 0 chr3 178142440 178142617 -39894541 - L1MA7 LINE L1 -797 5494 5317 * 2600 148 47 78 chr3 178142612 178142815 -39894343 - L1PB4 LINE L1 -1 6155 5947 207 0 0 0 chr3 178142815 178142838 -39894320 + (TC)n Simple_repeat Simple_repeat 2 24 0 1663 164 7 4 chr3 178142841 178143121 -39894037 - AluSx SINE Alu -31 281 1 2600 148 47 78 chr3 178143121 178143466 -39893692 - L1PB4 LINE L1 -211 5945 5620 1196 233 26 12 chr3 178143464 178143908 -39893250 - L1M4 LINE L1 -847 5299 4925 * 22 0 0 0 chr3 178145046 178145068 -39892090 + AT_rich Low_complexity Low_complexity 1 22 0 201 304 0 0 chr3 178145406 178145452 -39891706 + MER5A DNA MER1_type 95 140 -49 21 0 0 0 chr3 178146642 178146663 -39890495 + AT_rich Low_complexity Low_complexity 1 21 0 222 379 71 7 chr3 178148434 178148574 -39888584 - MIR3 SINE MIR -40 168 20 621 249 122 0 chr3 178149407 178149612 -39887546 - MER96B DNA MER1_type? -183 234 5 2209 65 7 0 chr3 178149806 178150085 -39887073 + AluY SINE Alu 1 281 -30 306 0 0 0 chr3 178150185 178150219 -39886939 + (A)n Simple_repeat Simple_repeat 1 34 0 618 82 0 27 chr3 178150220 178150330 -39886828 + (TA)n Simple_repeat Simple_repeat 1 107 0 18094 170 40 18 chr3 178150728 178151164 -39885994 - L1 LINE L1 -3524 4041 3616 1545 91 0 22 chr3 178151164 178151394 -39885764 - AluY SINE Alu -2 309 85 18094 170 40 18 chr3 178151394 178151458 -39885700 - L1 LINE L1 -3949 3616 3555 183 100 0 0 chr3 178151458 178151488 -39885670 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 18094 170 40 18 chr3 178151488 178154659 -39882499 - L1 LINE L1 -4010 3555 291 6544 63 26 8 chr3 178154660 178155536 -39881622 - L1PA7 LINE L1 -8 6146 5255 4656 96 4 4 chr3 178155552 178156239 -39880919 + L1P LINE L1 4485 5171 -975 1506 183 19 0 chr3 178156228 178156485 -39880673 - L1 LINE L1 -7262 303 42 * 300 330 19 0 chr3 178157046 178157149 -39880009 + MLT1L LTR MaLR 122 226 -389 35 0 0 0 chr3 178157164 178157199 -39879959 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr3 178157845 178157867 -39879291 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr3 178158765 178158794 -39878364 + AT_rich Low_complexity Low_complexity 1 29 0 2234 101 14 0 chr3 178158799 178159096 -39878062 + AluSx SINE Alu 1 301 -11 305 319 54 57 chr3 178160052 178160331 -39876827 + L1MEc LINE L1 90 367 -6029 820 201 40 6 chr3 178160388 178160562 -39876596 + MLT2B3 LTR ERVL 1 180 -374 1747 145 50 123 chr3 178160569 178161067 -39876091 - LTR22B LTR ERVK -30 462 1 1049 154 11 21 chr3 178161067 178161255 -39875903 - L1PB1 LINE L1 -184 5967 5782 216 151 38 0 chr3 178161255 178161308 -39875850 + (TA)n Simple_repeat Simple_repeat 1 55 0 3982 193 48 11 chr3 178161310 178163021 -39874137 - L1PB1 LINE L1 -360 5791 4014 15882 110 4 12 chr3 178163140 178165571 -39871587 + HERVH LTR ERV1 614 2984 -4729 5172 113 43 14 chr3 178165546 178166390 -39870768 + HERVH LTR ERV1 3126 3993 -3720 * 16592 178 40 15 chr3 178166560 178167994 -39869164 - L1PBa LINE L1 -1674 5188 3792 198 0 0 0 chr3 178167994 178168016 -39869142 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 2062 133 0 0 chr3 178168020 178168299 -39868859 - AluSx SINE Alu -30 282 4 16592 178 40 15 chr3 178168299 178171916 -39865242 - L1PBa LINE L1 -3072 3790 3 6936 201 64 54 chr3 178172219 178173870 -39863288 - MER52A LTR ERV1 -1 1754 1 302 200 38 25 chr3 178173942 178174022 -39863136 - Tigger2 DNA MER2_type -2628 90 10 6635 165 19 101 chr3 178174444 178174977 -39862181 - Tigger2 DNA MER2_type 0 2718 2143 1764 157 70 20 chr3 178174977 178175334 -39861824 - THE1C LTR MaLR 0 375 1 6635 165 19 101 chr3 178175334 178176350 -39860808 - Tigger2 DNA MER2_type -575 2143 1296 1141 243 42 83 chr3 178176350 178176868 -39860290 - LOR1a LTR ERV1 0 497 1 5882 170 57 35 chr3 178176868 178177932 -39859226 - Tigger2 DNA MER2_type -1419 1299 201 2225 117 0 7 chr3 178177932 178178240 -39858918 + AluSc SINE Alu 1 306 -3 5882 170 57 35 chr3 178178240 178178446 -39858712 - Tigger2 DNA MER2_type -2517 201 1 289 313 0 0 chr3 178178550 178178630 -39858528 + CT-rich Low_complexity Low_complexity 1 80 0 1431 211 10 20 chr3 178178630 178178929 -39858229 - AluJo SINE Alu -14 298 3 356 351 32 19 chr3 178179397 178179551 -39857607 - L2 LINE L2 0 3272 3117 339 289 78 21 chr3 178179668 178179810 -39857348 + L2 LINE L2 3121 3270 -43 4210 253 83 41 chr3 178180347 178180458 -39856700 - L1MCa LINE L1 -3219 3207 3102 2344 100 0 0 chr3 178180458 178180769 -39856389 - AluY SINE Alu 0 311 1 4210 253 83 41 chr3 178180769 178181076 -39856082 - L1MCa LINE L1 -3324 3102 2809 1838 189 13 23 chr3 178181076 178181467 -39855691 - MLT1B LTR MaLR 0 390 4 4210 253 83 41 chr3 178181467 178181941 -39855217 - L1MCa LINE L1 -3617 2809 2356 1738 164 16 16 chr3 178181941 178182246 -39854912 - AluSx SINE Alu -7 305 1 4210 253 83 41 chr3 178182246 178184240 -39852918 - L1MCa LINE L1 -4070 2356 25 1927 185 25 0 chr3 178184660 178184984 -39852174 + LTR32 LTR ERVL 15 346 -125 844 182 0 19 chr3 178185035 178185189 -39851969 + LTR32 LTR ERVL 319 469 -2 240 269 0 0 chr3 178186206 178186258 -39850900 + LTR30 LTR ERV1 1 52 -670 823 161 51 102 chr3 178186258 178186539 -39850619 + LTR12 LTR ERV1 54 274 -440 274 272 58 0 chr3 178186541 178186644 -39850514 + LTR30 LTR ERV1 544 652 -70 671 135 0 0 chr3 178186644 178186740 -39850418 + LTR12 LTR ERV1 617 712 -2 35218 111 23 9 chr3 178186757 178191922 -39845236 + HERV9 LTR ERV1 52 5288 -3111 42 36 0 0 chr3 178191983 178192039 -39845119 + AT_rich Low_complexity Low_complexity 1 56 0 26 88 0 0 chr3 178192681 178192749 -39844409 + AT_rich Low_complexity Low_complexity 1 68 0 37 0 0 0 chr3 178192971 178193008 -39844150 + AT_rich Low_complexity Low_complexity 1 37 0 1810 139 20 14 chr3 178193145 178193439 -39843719 + AluSx SINE Alu 1 296 -16 2735 178 68 2 chr3 178194172 178194716 -39842442 + LTR19B LTR ERV1 1 580 0 22 70 0 0 chr3 178195123 178195166 -39841992 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr3 178195452 178195474 -39841684 + AT_rich Low_complexity Low_complexity 1 22 0 315 304 60 10 chr3 178195660 178195861 -39841297 - L1MEc LINE L1 -5467 929 719 463 141 0 24 chr3 178196462 178196547 -39840611 + AluJ/FRAM SINE Alu 225 307 -5 22 0 0 0 chr3 178197167 178197189 -39839969 + AT_rich Low_complexity Low_complexity 1 22 0 231 275 99 53 chr3 178198093 178198224 -39838934 - MIR SINE MIR -54 208 72 761 249 75 63 chr3 178198494 178198907 -39838251 + LTR52 LTR ERVL 2 419 -2 3911 157 17 37 chr3 178199599 178200608 -39836550 - L1PA16 LINE L1 -217 5949 4978 1238 175 14 5 chr3 178200608 178200831 -39836327 + L1PA16 LINE L1 5932 6156 -10 32 0 0 0 chr3 178200831 178200863 -39836295 + AT_rich Low_complexity Low_complexity 1 32 0 478 223 11 0 chr3 178201295 178201389 -39835769 + FLAM_C SINE Alu 32 126 -17 25 31 0 0 chr3 178202064 178202096 -39835062 + AT_rich Low_complexity Low_complexity 1 32 0 2466 184 70 14 chr3 178202107 178202660 -39834498 - L1MD2 LINE L1 -91 6268 5685 3523 199 35 19 chr3 178202941 178203795 -39833363 - L1MA6 LINE L1 -913 5233 4366 2654 184 2 21 chr3 178203795 178204368 -39832790 + L1MA6 LINE L1 5232 5793 -507 2047 182 42 52 chr3 178204529 178205050 -39832108 + L1MA6 LINE L1 5776 6291 -9 24 0 0 0 chr3 178205241 178205265 -39831893 + AT_rich Low_complexity Low_complexity 1 24 0 787 105 16 0 chr3 178205282 178205406 -39831752 - L1MA6 LINE L1 -25 6275 6150 4135 172 70 1 chr3 178205487 178206914 -39830244 + L1MA4 LINE L1 4349 5867 -433 312 309 98 47 chr3 178206918 178207365 -39829793 - L1 LINE L1 -3540 2606 2137 25 0 0 0 chr3 178207488 178207513 -39829645 + AT_rich Low_complexity Low_complexity 1 25 0 22 70 0 0 chr3 178207858 178207901 -39829257 + AT_rich Low_complexity Low_complexity 1 43 0 459 0 0 0 chr3 178208144 178208195 -39828963 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 410 205 18 18 chr3 178208201 178208313 -39828845 - L1MA4A LINE L1 -10 6293 6182 * 9639 212 47 32 chr3 178208310 178208641 -39828517 - L1MA3 LINE L1 -181 6826 6501 195 100 0 0 chr3 178208641 178208671 -39828487 + (TG)n Simple_repeat Simple_repeat 2 31 0 9639 212 47 32 chr3 178208671 178208694 -39828464 - L1MA3 LINE L1 -506 6501 6480 181 81 27 27 chr3 178208694 178208731 -39828427 + (TA)n Simple_repeat Simple_repeat 1 37 0 9639 212 47 32 chr3 178208731 178211889 -39825269 - L1MA3 LINE L1 -527 6480 3258 7617 259 74 42 chr3 178211942 178214746 -39822412 - L1MA3 LINE L1 -3947 2902 10 258 278 0 26 chr3 178215575 178215690 -39821468 + HERVH LTR ERV1 2873 2984 -4729 * 12247 116 26 36 chr3 178215686 178217719 -39819439 + HERVH LTR ERV1 3138 5149 -2564 1361 122 17 38 chr3 178217699 178217936 -39819222 + HERVH LTR ERV1 5588 5819 -1894 * 2423 95 48 13 chr3 178217934 178218313 -39818845 + HERVH LTR ERV1 7322 7713 0 2652 82 92 5 chr3 178218313 178218725 -39818433 + LTR7 LTR ERV1 1 448 -2 2700 189 73 37 chr3 178219326 178219798 -39817360 + MER67C LTR ERV1 14 519 -191 2291 94 0 3 chr3 178219798 178220105 -39817053 + AluY SINE Alu 1 306 -5 2700 189 73 37 chr3 178220105 178220305 -39816853 + MER67C LTR ERV1 519 710 0 22 0 0 0 chr3 178220468 178220490 -39816668 + AT_rich Low_complexity Low_complexity 1 22 0 30 27 0 0 chr3 178220520 178220557 -39816601 + AT_rich Low_complexity Low_complexity 1 37 0 984 125 17 23 chr3 178220743 178220919 -39816239 - MER30 DNA MER1_type -55 175 1 1769 166 23 65 chr3 178220939 178221410 -39815748 + MLT2A2 LTR ERVL 1 455 -99 9504 119 2 4 chr3 178221410 178222766 -39814392 + HERVL-A2 LTR ERVL 4299 5652 -2 2010 160 37 34 chr3 178222768 178223325 -39813833 + MLT2A2 LTR ERVL 1 554 0 25 75 0 0 chr3 178223567 178223620 -39813538 + AT_rich Low_complexity Low_complexity 1 53 0 200 200 0 0 chr3 178223712 178223747 -39813411 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1751 172 6 16 chr3 178223966 178224286 -39812872 + Tigger3(Golem) DNA MER2_type 2 318 -2711 637 221 33 0 chr3 178224298 178224420 -39812738 - Tigger5 DNA MER2_type -2194 129 4 619 278 148 11 chr3 178224653 178224937 -39812221 - L1ME2 LINE L1 -1 6163 5841 1226 202 61 72 chr3 178224945 178225321 -39811837 - LTR8A LTR ERV1 0 727 356 490 167 67 0 chr3 178225321 178225411 -39811747 - LTR8 LTR ERV1 -595 96 1 1251 264 74 8 chr3 178225413 178225886 -39811272 - L1ME2 LINE L1 -330 5834 5331 599 261 64 7 chr3 178225927 178226210 -39810948 - L1ME2 LINE L1 -2764 3382 3084 608 167 42 35 chr3 178226246 178226390 -39810768 - MER51-int LTR ERV1 -3655 4161 4017 799 239 128 0 chr3 178226403 178226708 -39810450 - L1ME2 LINE L1 -3077 3069 2726 738 177 8 0 chr3 178226727 178226857 -39810301 - MER50 LTR ERV1 -29 705 575 2109 88 3 50 chr3 178227271 178227588 -39809570 - AluSp SINE Alu -11 302 1 245 229 0 33 chr3 178227719 178227780 -39809378 + CT-rich Low_complexity Low_complexity 4 62 0 718 264 71 95 chr3 178227965 178228436 -39808722 + MER110A LTR ERV1 44 484 0 628 301 17 6 chr3 178228537 178228713 -39808445 + MER45A DNA AcHobo 1 178 0 383 281 43 24 chr3 178229002 178229166 -39807992 + MER110-int LTR ERV1 3274 3440 -1207 23 33 0 0 chr3 178229254 178229284 -39807874 + AT_rich Low_complexity Low_complexity 1 30 0 38 85 0 0 chr3 178229997 178230091 -39807067 + AT_rich Low_complexity Low_complexity 1 94 0 364 294 176 5 chr3 178230115 178230302 -39806856 - MIR SINE MIR -38 224 6 222 203 27 14 chr3 178230863 178230937 -39806221 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 23 78 0 0 chr3 178231314 178231365 -39805793 + AT_rich Low_complexity Low_complexity 1 51 0 245 229 10 73 chr3 178231891 178231987 -39805171 + L1MC4 LINE L1 6614 6703 -1339 364 225 0 18 chr3 178231991 178232102 -39805056 + (TA)n Simple_repeat Simple_repeat 2 110 0 197 237 0 13 chr3 178232132 178232208 -39804950 + (TATG)n Simple_repeat Simple_repeat 2 76 0 1744 127 3 39 chr3 178232256 178232540 -39804618 + AluSx SINE Alu 35 308 -4 23 0 0 0 chr3 178233167 178233190 -39803968 + AT_rich Low_complexity Low_complexity 1 23 0 405 39 0 0 chr3 178233726 178233777 -39803381 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 50 51 0 0 chr3 178233944 178234022 -39803136 + AT_rich Low_complexity Low_complexity 1 78 0 2731 214 58 34 chr3 178235090 178235894 -39801264 - LTR1B LTR ERV1 0 826 3 335 256 68 60 chr3 178236327 178236460 -39800698 + L2 LINE L2 1168 1301 -2013 1710 138 72 39 chr3 178236462 178236823 -39800335 - THE1C LTR MaLR 0 375 3 9266 127 52 14 chr3 178236823 178238344 -39798814 - THE1C-int LTR MaLR 0 1580 1 1739 150 70 25 chr3 178238344 178238703 -39798455 - THE1C LTR MaLR 0 375 1 216 135 0 0 chr3 178238945 178238982 -39798176 + (CA)n Simple_repeat Simple_repeat 1 37 0 49 76 0 0 chr3 178239293 178239398 -39797760 + AT_rich Low_complexity Low_complexity 1 105 0 729 210 34 6 chr3 178239511 178239687 -39797471 + MER3 DNA MER1_type 11 191 -18 486 276 31 25 chr3 178239832 178240028 -39797130 + LTR16B LTR ERVL 268 464 0 22 0 0 0 chr3 178240414 178240436 -39796722 + AT_rich Low_complexity Low_complexity 1 22 0 747 283 69 88 chr3 178241687 178242164 -39794994 + L2 LINE L2 2841 3308 -5 248 326 31 31 chr3 178242231 178242329 -39794829 - L2 LINE L2 -32 3240 3143 5420 151 22 19 chr3 178242569 178243785 -39793373 + L1PA15 LINE L1 4944 6156 -9 24 0 0 0 chr3 178243800 178243824 -39793334 + AT_rich Low_complexity Low_complexity 1 24 0 1360 207 111 49 chr3 178244643 178245049 -39792109 - MLT1C LTR MaLR 0 467 37 256 178 0 96 chr3 178245087 178245160 -39791998 + MER46C DNA MER2_type 76 141 -197 24 0 0 0 chr3 178245283 178245307 -39791851 + AT_rich Low_complexity Low_complexity 1 24 0 713 163 0 0 chr3 178245307 178245430 -39791728 - L1PB1 LINE L1 -8 6143 6021 3014 142 62 17 chr3 178245430 178246094 -39791064 + L1PB1 LINE L1 4916 5624 -527 2004 113 14 7 chr3 178246094 178246386 -39790772 + AluSc SINE Alu 1 294 -15 3014 142 62 17 chr3 178246386 178246563 -39790595 + L1PB1 LINE L1 5624 5792 -359 497 203 0 8 chr3 178246563 178246691 -39790467 + (CA)n Simple_repeat Simple_repeat 2 128 0 1324 156 0 9 chr3 178246694 178246925 -39790233 + L1PB1 LINE L1 5795 6023 -128 1128 265 115 9 chr3 178247021 178247595 -39789563 + MER114 LTR ERV 1 635 -13 22 0 0 0 chr3 178248442 178248464 -39788694 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr3 178249052 178249088 -39788070 + AT_rich Low_complexity Low_complexity 1 36 0 302 347 111 11 chr3 178250516 178250706 -39786452 + L1MEc LINE L1 1601 1809 -4587 22 0 0 0 chr3 178251254 178251276 -39785882 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr3 178251515 178251546 -39785612 + AT_rich Low_complexity Low_complexity 1 31 0 7676 21 2 0 chr3 178251596 178252967 -39784191 + L1PA3 LINE L1 4780 6152 -3 264 149 0 0 chr3 178252987 178253034 -39784124 + (A)n Simple_repeat Simple_repeat 1 47 0 2768 195 41 30 chr3 178253036 178253642 -39783516 - HERVL74 LTR ERVL -3995 1690 1078 185 83 28 0 chr3 178253681 178253717 -39783441 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 291 28 0 0 chr3 178253735 178253771 -39783387 + (TG)n Simple_repeat Simple_repeat 1 36 0 8154 114 56 7 chr3 178253802 178255043 -39782115 + THE1C-int LTR MaLR 279 1580 0 1717 170 19 22 chr3 178255043 178255367 -39781791 + THE1C LTR MaLR 1 323 -52 237 261 48 21 chr3 178255529 178255674 -39781484 + HAL1b LINE L1 681 766 -818 23 33 0 0 chr3 178255837 178255867 -39781291 + AT_rich Low_complexity Low_complexity 1 30 0 1631 186 26 0 chr3 178255881 178256187 -39780971 + MER2 DNA MER2_type 32 345 0 879 78 86 0 chr3 178256459 178256587 -39780571 - MER85 DNA T2_type 0 139 1 441 227 10 10 chr3 178256784 178256881 -39780277 + Tigger3b DNA MER2_type 2 98 -1133 4786 150 39 40 chr3 178256882 178257841 -39779317 + Tigger3b DNA MER2_type 274 1231 0 5851 146 6 41 chr3 178258031 178259110 -39778048 + Tigger1 DNA MER2_type 805 1845 -573 5109 164 35 8 chr3 178259225 178260154 -39777004 + Tigger1 DNA MER2_type 1463 2417 -1 1405 216 117 35 chr3 178260749 178261184 -39775974 + LTR1B LTR ERV1 1 471 -355 694 198 35 23 chr3 178261183 178261355 -39775803 + LTR1B LTR ERV1 653 826 0 * 25 31 0 0 chr3 178262150 178262182 -39774976 + AT_rich Low_complexity Low_complexity 1 32 0 270 140 60 0 chr3 178263229 178263279 -39773879 - MER90 LTR ERV1 -559 55 3 771 304 65 20 chr3 178263348 178263750 -39773408 - L1ME3A LINE L1 -176 5994 5575 319 181 28 0 chr3 178265651 178265723 -39771435 + MER53 DNA DNA 105 178 -11 192 250 147 15 chr3 178266750 178266818 -39770340 - L2 LINE L2 -2 3311 3235 366 360 44 5 chr3 178266849 178267052 -39770106 + L2 LINE L2 3103 3313 0 29 47 0 0 chr3 178267431 178267474 -39769684 + AT_rich Low_complexity Low_complexity 1 43 0 356 329 22 40 chr3 178268019 178268241 -39768917 + L1ME1 LINE L1 5153 5370 -776 486 321 86 59 chr3 178268853 178269308 -39767850 - LTR33 LTR ERVL -52 469 3 189 320 80 0 chr3 178270019 178270094 -39767064 + MIR3 SINE MIR 87 167 -41 23 33 0 0 chr3 178270434 178270464 -39766694 + AT_rich Low_complexity Low_complexity 1 30 0 1606 279 85 5 chr3 178270522 178270715 -39766443 + L1ME1 LINE L1 5480 5656 -510 2830 63 47 0 chr3 178270715 178271098 -39766060 + L1PA8 LINE L1 5769 6169 -3 1606 279 85 5 chr3 178271098 178271455 -39765703 + L1ME1 LINE L1 5656 6074 -92 4728 95 16 0 chr3 178271510 178272154 -39765004 + THE1B-int LTR MaLR 927 1580 0 1929 152 48 22 chr3 178272154 178272509 -39764649 + THE1B LTR MaLR 1 364 0 21 57 0 0 chr3 178272516 178272551 -39764607 + AT_rich Low_complexity Low_complexity 1 35 0 394 186 39 10 chr3 178272789 178272891 -39764267 - L1MA8 LINE L1 0 6291 6187 45 96 0 0 chr3 178272970 178273106 -39764052 + AT_rich Low_complexity Low_complexity 1 136 0 298 161 0 0 chr3 178274113 178274169 -39762989 - Alu SINE Alu 0 302 247 189 171 0 0 chr3 178274244 178274279 -39762879 + CT-rich Low_complexity Low_complexity 3 37 0 332 197 107 57 chr3 178274585 178274707 -39762451 - MER51D LTR ERV1 -28 629 502 5346 162 22 29 chr3 178274888 178275964 -39761194 - MER11C LTR ERVK -2 1069 1 289 374 24 8 chr3 178276370 178276493 -39760665 + MIR SINE MIR 64 188 -74 24 77 0 0 chr3 178276753 178276805 -39760353 + AT_rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr3 178277716 178277739 -39759419 + AT_rich Low_complexity Low_complexity 1 23 0 1030 235 81 20 chr3 178279146 178279491 -39757667 + MER47A DNA MER2_type 1 366 0 1911 137 3 0 chr3 178279984 178280269 -39756889 + AluSx SINE Alu 24 309 -3 218 345 12 89 chr3 178280318 178280486 -39756672 + MIR SINE MIR 51 205 -57 348 303 130 38 chr3 178281223 178281408 -39755750 + MIR SINE MIR 48 249 -13 200 238 0 0 chr3 178281714 178281756 -39755402 + (TA)n Simple_repeat Simple_repeat 1 42 0 500 110 0 0 chr3 178281934 178282007 -39755151 + MER41B LTR ERV1 1 73 -562 1939 237 123 55 chr3 178282123 178283040 -39754118 - L1MC4 LINE L1 -39 8003 7024 233 224 10 133 chr3 178283047 178283145 -39754013 - L1MC4 LINE L1 -1143 6899 6814 326 264 136 36 chr3 178283295 178283435 -39753723 - MLT1H LTR MaLR -373 176 23 22 0 0 0 chr3 178283648 178283670 -39753488 + AT_rich Low_complexity Low_complexity 1 22 0 2118 121 0 7 chr3 178284376 178284682 -39752476 - AluSc SINE Alu -5 304 1 397 308 91 58 chr3 178284935 178285387 -39751771 - HAL1b LINE L1 -600 748 282 433 208 50 10 chr3 178285744 178285845 -39751313 + L1MC4a LINE L1 6736 6840 -968 21 0 0 0 chr3 178287076 178287097 -39750061 + AT_rich Low_complexity Low_complexity 1 21 0 1932 218 88 67 chr3 178288435 178288971 -39748187 + MLT1E3 LTR MaLR 6 558 -66 2340 99 0 0 chr3 178288971 178289283 -39747875 - AluSx SINE Alu 0 312 1 1932 218 88 67 chr3 178289283 178289346 -39747812 + MLT1E3 LTR MaLR 558 618 -6 189 0 0 0 chr3 178289348 178289369 -39747789 + (A)n Simple_repeat Simple_repeat 1 21 0 25 0 0 0 chr3 178289404 178289429 -39747729 + AT_rich Low_complexity Low_complexity 1 25 0 200 170 38 19 chr3 178289713 178289766 -39747392 + (CATA)n Simple_repeat Simple_repeat 3 56 0 747 216 66 19 chr3 178289810 178290023 -39747135 - MER58 DNA MER1_type -57 284 62 3703 205 80 40 chr3 178290239 178291278 -39745880 + Tigger6a DNA MER2_type 2 1082 -1 222 259 17 0 chr3 178291283 178291341 -39745817 + (TATATG)n Simple_repeat Simple_repeat 6 64 0 758 241 18 64 chr3 178292214 178292261 -39744897 - MIR SINE MIR -21 241 193 1953 137 10 0 chr3 178292261 178292560 -39744598 + AluSc SINE Alu 1 302 -7 758 241 18 64 chr3 178292560 178292732 -39744426 - MIR SINE MIR -69 193 32 22 0 0 0 chr3 178293777 178293799 -39743359 + AT_rich Low_complexity Low_complexity 1 22 0 13273 188 34 9 chr3 178294107 178296757 -39740401 + Tigger2 DNA MER2_type 2 2718 0 21 0 0 0 chr3 178297034 178297055 -39740103 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 178297218 178297240 -39739918 + AT_rich Low_complexity Low_complexity 1 22 0 221 0 0 33 chr3 178297851 178297881 -39739277 + (GAGTG)n Simple_repeat Simple_repeat 3 31 0 21 57 0 0 chr3 178298641 178298676 -39738482 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 178298870 178298893 -39738265 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 178299283 178299306 -39737852 + AT_rich Low_complexity Low_complexity 1 23 0 487 101 69 0 chr3 178299306 178299465 -39737693 + (TA)n Simple_repeat Simple_repeat 1 170 0 770 176 74 0 chr3 178299546 178299694 -39737464 - AluJo SINE Alu -20 292 134 1525 216 0 13 chr3 178299694 178299999 -39737159 - AluJo SINE Alu -11 301 1 353 314 87 37 chr3 178299999 178300241 -39736917 - L1MC/D LINE L1 -2260 5548 5295 22 0 0 0 chr3 178300318 178300340 -39736818 + AT_rich Low_complexity Low_complexity 1 22 0 254 211 93 100 chr3 178300983 178301104 -39736054 + MIR SINE MIR 64 182 -63 34 0 0 0 chr3 178301790 178301824 -39735334 + AT_rich Low_complexity Low_complexity 1 34 0 788 156 15 7 chr3 178301857 178301992 -39735166 - AluJo SINE Alu -176 136 1 219 36 0 0 chr3 178302376 178302404 -39734754 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 3504 127 60 2 chr3 178302991 178303591 -39733567 + LTR24C LTR ERV1 1 635 0 2658 10 0 0 chr3 178303677 178303981 -39733177 + L1PA2 LINE L1 5852 6155 0 180 0 0 0 chr3 178304012 178304032 -39733126 + (A)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr3 178304032 178304055 -39733103 + AT_rich Low_complexity Low_complexity 1 23 0 2548 86 108 5 chr3 178304283 178304689 -39732469 + LTR7 LTR ERV1 1 448 -2 18593 108 6 20 chr3 178304691 178307575 -39729583 + HERVH LTR ERV1 1 2842 -4871 732 210 167 0 chr3 178307705 178307957 -39729201 - L1M4 LINE L1 -3127 3019 2726 1337 167 4 4 chr3 178307976 178308204 -39728954 - MER50 LTR ERV1 -29 705 478 2822 192 26 21 chr3 178308210 178308875 -39728283 - MER50-int LTR ERV1 -804 4076 3415 225 114 136 0 chr3 178308875 178308919 -39728239 + L1PA13 LINE L1 292 341 -6446 2822 192 26 21 chr3 178308919 178309450 -39727708 - MER50-int LTR ERV1 -1465 3415 1003 * 10182 149 53 31 chr3 178309446 178311256 -39725902 - MER50-int LTR ERV1 -5355 1850 1 1974 176 39 5 chr3 178311258 178311923 -39725235 - MER50 LTR ERV1 -24 710 1 573 346 20 8 chr3 178312345 178312599 -39724559 - L1MEc LINE L1 -6104 292 36 2068 132 14 0 chr3 178312606 178312902 -39724256 + AluSx SINE Alu 1 300 -12 197 0 71 0 chr3 178314380 178314408 -39722750 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1007 272 50 6 chr3 178314551 178314889 -39722269 + MER113 DNA MER1_type? 160 512 -9 221 226 0 0 chr3 178315390 178315443 -39721715 + (CA)n Simple_repeat Simple_repeat 2 54 0 42 71 0 0 chr3 178316106 178316190 -39720968 + AT_rich Low_complexity Low_complexity 1 84 0 42 71 0 0 chr3 178316416 178316500 -39720658 + AT_rich Low_complexity Low_complexity 1 84 0 227 103 26 0 chr3 178316528 178316567 -39720591 + (TA)n Simple_repeat Simple_repeat 1 40 0 825 263 0 0 chr3 178316749 178316935 -39720223 + MLT1A1 LTR MaLR 1 186 -179 352 309 133 6 chr3 178317770 178317951 -39719207 - MIR SINE MIR -6 256 53 21 36 0 0 chr3 178318438 178318466 -39718692 + AT_rich Low_complexity Low_complexity 1 28 0 233 378 49 0 chr3 178318992 178319074 -39718084 + L2 LINE L2 3155 3240 -32 879 208 11 0 chr3 178319726 178319904 -39717254 - FRAM SINE Alu -4 172 1 2040 132 0 3 chr3 178319935 178320230 -39716928 - AluSx SINE Alu -18 294 1 343 322 104 20 chr3 178321087 178321289 -39715869 - LTR33 LTR ERVL -299 222 4 1605 251 72 66 chr3 178321646 178322296 -39714862 + MLT1E1 LTR MaLR 1 654 0 24 0 0 0 chr3 178322647 178322671 -39714487 + AT_rich Low_complexity Low_complexity 1 24 0 2592 98 8 16 chr3 178323742 178324118 -39713040 - THE1C LTR MaLR -2 373 1 34 32 0 32 chr3 178324221 178324252 -39712906 + AT_rich Low_complexity Low_complexity 1 31 -30 775 178 0 0 chr3 178324252 178324370 -39712788 - FLAM_C SINE Alu -15 118 1 34 32 0 32 chr3 178324370 178324401 -39712757 + AT_rich Low_complexity Low_complexity 31 61 0 2145 131 0 0 chr3 178324443 178324749 -39712409 + AluSg SINE Alu 1 306 -4 318 157 59 10 chr3 178325295 178325397 -39711761 + (TA)n Simple_repeat Simple_repeat 2 108 0 233 257 106 98 chr3 178326084 178326198 -39710960 + LTR33 LTR ERVL 5 117 -404 1284 215 64 17 chr3 178326198 178326496 -39710662 - AluJo SINE Alu 0 312 1 233 257 106 98 chr3 178326496 178326646 -39710512 + LTR33 LTR ERVL 117 271 -250 552 100 10 20 chr3 178327118 178327218 -39709940 + (GAAAA)n Simple_repeat Simple_repeat 1 99 0 7236 51 0 0 chr3 178327352 178328583 -39708575 - L1PA5 LINE L1 -1 6153 4924 8365 52 0 0 chr3 178328584 178329644 -39707514 + L1PA5 LINE L1 3845 4904 -1242 398 277 64 105 chr3 178330273 178330587 -39706571 + L1MC3 LINE L1 254 554 -5491 2039 292 84 23 chr3 178330691 178332676 -39704482 + L1MC3 LINE L1 546 2847 -3898 8464 222 81 20 chr3 178332810 178332977 -39704181 + L1MC3 LINE L1 5673 5828 -2375 1499 143 100 8 chr3 178332977 178333290 -39703868 + AluSx SINE Alu 1 337 0 8464 222 81 20 chr3 178333290 178335504 -39701654 + L1MC3 LINE L1 5828 8202 -1 24 0 0 0 chr3 178336141 178336165 -39700993 + AT_rich Low_complexity Low_complexity 1 24 0 5726 204 143 23 chr3 178338816 178340306 -39696852 - MER52A LTR ERV1 0 1755 1 2951 104 22 4 chr3 178340319 178340769 -39696389 + L1PA13 LINE L1 5705 6162 -1 243 326 70 43 chr3 178341450 178341680 -39695478 + MIR SINE MIR 13 248 -14 1206 321 98 25 chr3 178341689 178342434 -39694724 - L1MEc LINE L1 -5556 840 42 22 0 0 0 chr3 178342632 178342654 -39694504 + AT_rich Low_complexity Low_complexity 1 22 0 816 288 106 27 chr3 178343527 178343933 -39693225 + LTR16A LTR ERVL 13 450 0 239 355 145 34 chr3 178344766 178345409 -39691749 + L2 LINE L2 1982 2695 -619 240 35 0 0 chr3 178345489 178345518 -39691640 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6394 251 60 20 chr3 178345629 178347254 -39689904 + L1M2 LINE L1 1 1690 -5159 4142 219 44 40 chr3 178347274 178347391 -39689767 + L1M2 LINE L1 1783 1898 -4950 1542 183 37 0 chr3 178347391 178347664 -39689494 + AluSx SINE Alu 25 307 -5 4142 219 44 40 chr3 178347664 178349380 -39687778 + L1M2 LINE L1 1898 3607 -3241 2252 162 67 0 chr3 178349380 178349574 -39687584 + MSTA LTR MaLR 1 181 -247 186 43 0 0 chr3 178349574 178349597 -39687561 + (TCCC)n Simple_repeat Simple_repeat 3 25 0 2252 162 67 0 chr3 178349597 178349803 -39687355 + MSTA LTR MaLR 181 428 0 7551 202 47 9 chr3 178349804 178351395 -39685763 + MSTA-int LTR MaLR 2 1651 0 2530 154 21 5 chr3 178351395 178351816 -39685342 + MSTA LTR MaLR 1 428 0 4142 219 44 40 chr3 178351816 178352213 -39684945 + L1M2 LINE L1 3606 4028 -2820 1804 112 14 101 chr3 178352192 178352329 -39684829 + L1P4 LINE L1 6178 6325 -543 * 243 0 0 0 chr3 178352329 178352356 -39684802 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1804 112 14 101 chr3 178352356 178352376 -39684782 + L1P4 LINE L1 6325 6345 -523 1895 109 41 0 chr3 178352376 178352643 -39684515 - AluSp SINE Alu -25 288 11 1804 112 14 101 chr3 178352643 178352840 -39684318 + L1P4 LINE L1 6345 6502 -366 266 235 0 37 chr3 178352949 178353030 -39684128 + (TA)n Simple_repeat Simple_repeat 2 79 0 248 230 0 14 chr3 178353195 178353269 -39683889 + (TA)n Simple_repeat Simple_repeat 2 74 0 1005 120 31 5 chr3 178353372 178353564 -39683594 - L1P LINE L1 -1194 4952 4756 * 8185 51 3 0 chr3 178353562 178354599 -39682559 + L1P LINE L1 3412 4451 -1695 1457 152 47 29 chr3 178355756 178356032 -39681126 - MER1B DNA MER1_type -2 337 57 2029 138 0 14 chr3 178356341 178356637 -39680521 - AluSx SINE Alu -17 295 4 684 198 130 106 chr3 178356700 178356739 -39680419 - MER58C DNA MER1_type -2206 214 177 1729 149 87 0 chr3 178356739 178357014 -39680144 + AluSg SINE Alu 1 299 -11 684 198 130 106 chr3 178357014 178357181 -39679977 - MER58C DNA MER1_type -2243 177 3 321 188 24 24 chr3 178357569 178357654 -39679504 - THE1C-int LTR MaLR -1495 85 1 1998 138 55 17 chr3 178357654 178358015 -39679143 - THE1C LTR MaLR 0 375 1 264 201 171 36 chr3 178358062 178358183 -39678975 + L1ME LINE L1 5336 5472 -698 9561 38 9 2 chr3 178408628 178410199 -39626959 - L1P1 LINE L1 -386 5769 4191 185 298 154 10 chr3 178410199 178410303 -39626855 + L2 LINE L2 3193 3311 -2 367 239 68 0 chr3 178410803 178410920 -39626238 + L1MCb LINE L1 40 164 -5881 1089 201 74 32 chr3 178413521 178413805 -39623353 - THE1C LTR MaLR 0 375 80 4549 123 59 48 chr3 178413805 178415232 -39621926 + pTR5 LTR ERV1 747 2606 0 398 213 0 12 chr3 178415232 178415312 -39621846 - THE1C LTR MaLR -349 79 1 8761 161 12 42 chr3 178415312 178415375 -39621783 - THE1C-int LTR MaLR 0 1580 1517 1892 170 24 29 chr3 178415375 178415752 -39621406 - THE1C LTR MaLR 0 375 1 8736 138 29 62 chr3 178415752 178417386 -39619772 - THE1C-int LTR MaLR 0 1580 1 2236 139 21 16 chr3 178417386 178417759 -39619399 - THE1C LTR MaLR 0 375 1 8761 161 12 42 chr3 178417759 178419318 -39617840 - THE1C-int LTR MaLR -60 1520 4 1277 225 60 30 chr3 178419321 178419685 -39617473 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr3 178419857 178419878 -39617280 + AT_rich Low_complexity Low_complexity 1 21 0 1597 195 13 22 chr3 178420089 178420402 -39616756 + AluJo SINE Alu 1 310 -2 228 35 0 0 chr3 178420514 178420543 -39616615 + (CA)n Simple_repeat Simple_repeat 2 30 0 1140 226 52 0 chr3 178421170 178421422 -39615736 - L1PA16 LINE L1 -7 7597 7333 * 10561 265 25 25 chr3 178421421 178426175 -39610983 - L1PA16 LINE L1 -626 6978 2182 673 360 40 11 chr3 178426958 178427330 -39609828 - L1PA16 LINE L1 -7187 394 12 243 167 0 37 chr3 178427349 178427403 -39609755 + T-rich Low_complexity Low_complexity 4 55 0 745 187 7 0 chr3 178427429 178427568 -39609590 - L1P5 LINE L1 -361 5790 5651 1284 360 43 9 chr3 178427575 178428219 -39608939 - HERV16 LTR ERVL -2671 2325 1660 28 29 0 0 chr3 178428875 178428910 -39608248 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 178429262 178429285 -39607873 + AT_rich Low_complexity Low_complexity 1 23 0 27 49 0 0 chr3 178429439 178429480 -39607678 + AT_rich Low_complexity Low_complexity 1 41 0 29 0 0 0 chr3 178430393 178430422 -39606736 + AT_rich Low_complexity Low_complexity 1 29 0 225 237 0 0 chr3 178430935 178430994 -39606164 + (TATG)n Simple_repeat Simple_repeat 3 61 0 1863 161 13 0 chr3 178431888 178432187 -39604971 + AluSx SINE Alu 1 303 -9 211 313 15 0 chr3 178432220 178432287 -39604871 + GA-rich Low_complexity Low_complexity 2 69 0 77 97 0 0 chr3 178432632 178432870 -39604288 + AT_rich Low_complexity Low_complexity 1 238 0 23 68 0 0 chr3 178433090 178433134 -39604024 + AT_rich Low_complexity Low_complexity 1 44 0 189 359 13 13 chr3 178433223 178433301 -39603857 - MIR SINE MIR -183 79 2 237 174 0 0 chr3 178433444 178433513 -39603645 + (TA)n Simple_repeat Simple_repeat 2 70 0 1070 233 53 34 chr3 178433538 178433895 -39603263 - MLT1A1 LTR MaLR -1 364 1 285 360 112 0 chr3 178433977 178434227 -39602931 + L2 LINE L2 1932 2209 -1105 1323 126 196 49 chr3 178434300 178434626 -39602532 - THE1C LTR MaLR 0 375 2 21 0 0 0 chr3 178434809 178434830 -39602328 + AT_rich Low_complexity Low_complexity 1 21 0 1277 225 60 30 chr3 178435002 178435366 -39601792 + THE1C LTR MaLR 1 375 0 8761 161 12 42 chr3 178435369 178436928 -39600230 + THE1C-int LTR MaLR 4 1607 27 2236 139 21 16 chr3 178436928 178437301 -39599857 + THE1C LTR MaLR 1 375 0 8753 137 29 61 chr3 178437301 178438933 -39598225 + THE1C-int LTR MaLR 1 1580 0 1892 170 24 29 chr3 178438933 178439310 -39597848 + THE1C LTR MaLR 1 375 0 8761 161 12 42 chr3 178439310 178439373 -39597785 + THE1C-int LTR MaLR 1517 1580 0 398 213 0 12 chr3 178439373 178439453 -39597705 + THE1C LTR MaLR 1 79 -349 4549 123 59 48 chr3 178439453 178440880 -39596278 - pTR5 LTR ERV1 0 2606 1524 1089 201 74 32 chr3 178440880 178441164 -39595994 + THE1C LTR MaLR 80 375 0 233 321 114 7 chr3 178441637 178441777 -39595381 - MIR SINE MIR -59 203 49 41 21 0 0 chr3 178441883 178441931 -39595227 + AT_rich Low_complexity Low_complexity 1 48 0 2108 118 0 10 chr3 178442695 178442992 -39594166 + AluSx SINE Alu 1 294 -18 25 0 0 0 chr3 178443316 178443341 -39593817 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr3 178443958 178443986 -39593172 + AT_rich Low_complexity Low_complexity 1 28 0 6554 83 0 0 chr3 178444068 178445166 -39591992 - L1PA7 LINE L1 -7 6147 5047 25 31 0 0 chr3 178445621 178445653 -39591505 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr3 178445827 178445850 -39591308 + AT_rich Low_complexity Low_complexity 1 23 0 3613 221 111 69 chr3 178446501 178447700 -39589458 - L1 LINE L1 -3049 3279 2133 210 37 0 0 chr3 178447700 178447727 -39589431 + (TTG)n Simple_repeat Simple_repeat 2 28 0 3613 221 111 69 chr3 178447727 178448287 -39588871 - L1 LINE L1 -4195 2133 1598 212 0 36 0 chr3 178448287 178448315 -39588843 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 3613 221 111 69 chr3 178448315 178448419 -39588739 - L1 LINE L1 -4730 1598 1500 5825 50 1 3 chr3 178448419 178449139 -39588019 + L1PA5 LINE L1 5436 6154 0 338 74 19 0 chr3 178449141 178449195 -39587963 - LTR38B LTR ERV1 -555 55 1 631 105 24 32 chr3 178449195 178449319 -39587839 + L1MB3 LINE L1 6061 6183 0 3613 221 111 69 chr3 178449319 178450314 -39586844 - L1 LINE L1 -4828 1500 96 3179 100 9 0 chr3 178450314 178450354 -39586804 - MLT2A1 LTR ERVL 0 444 406 264 30 0 0 chr3 178450354 178450387 -39586771 + (CA)n Simple_repeat Simple_repeat 2 34 0 3179 100 9 0 chr3 178450387 178450786 -39586372 - MLT2A1 LTR ERVL -38 406 1 3613 221 111 69 chr3 178450786 178450871 -39586287 - L1 LINE L1 -6232 96 16 1541 203 13 17 chr3 178451419 178451720 -39585438 + AluJb SINE Alu 2 301 -11 1952 168 18 0 chr3 178452281 178452615 -39584543 - MER57A LTR ERV1 -61 342 3 1484 106 13 30 chr3 178452617 178452852 -39584306 - MER57A-int LTR ERV1 0 7537 7307 754 139 21 42 chr3 178452853 178452997 -39584161 - LTR54B LTR ERV1 -355 143 3 14216 101 46 33 chr3 178453018 178454881 -39582277 - MER57A-int LTR ERV1 -400 7137 5109 329 47 0 0 chr3 178454881 178454924 -39582234 + MADE1 DNA Mariner 1 43 -37 14216 101 46 33 chr3 178454924 178455797 -39581361 - MER57A-int LTR ERV1 -2428 5109 4248 914 201 53 5 chr3 178455794 178456003 -39581155 + MER57-int LTR ERV1 672 890 -6647 * 14313 115 22 8 chr3 178456190 178458440 -39578718 - L1P LINE L1 -1242 4904 2624 2197 149 13 10 chr3 178458437 178458827 -39578331 - L1MA4 LINE L1 -299 6001 5611 * 1155 209 15 0 chr3 178458825 178459084 -39578074 + L1MA4 LINE L1 5341 5603 -697 * 2335 79 3 0 chr3 178459222 178459525 -39577633 - AluY SINE Alu -7 304 1 225 154 0 39 chr3 178459635 178459687 -39577471 - L1MC4 LINE L1 -1334 6708 6659 1580 226 86 45 chr3 178460601 178461014 -39576144 + MLT1D LTR MaLR 91 505 0 24 53 0 0 chr3 178462207 178462245 -39574913 + AT_rich Low_complexity Low_complexity 1 38 0 688 269 24 23 chr3 178462502 178462797 -39574361 + MLT2D LTR ERVL 1 366 -48 2512 166 31 2 chr3 178463058 178463575 -39573583 - L1MA4 LINE L1 -15 6285 5754 * 6392 82 26 0 chr3 178463573 178464765 -39572393 - L1PA8 LINE L1 -7 6165 4973 357 269 84 76 chr3 178465422 178465489 -39571669 + MLT1I LTR MaLR 108 173 -236 1231 289 111 27 chr3 178465489 178466001 -39571157 - MLT1H1 LTR MaLR 0 555 1 357 269 84 76 chr3 178466001 178466208 -39570950 + MLT1I LTR MaLR 173 384 -25 274 77 26 0 chr3 178467928 178467967 -39569191 - MER116 DNA Mariner -3 77 38 310 329 7 43 chr3 178468107 178468247 -39568911 - L2 LINE L2 0 3313 3179 2099 92 3 23 chr3 178469454 178469758 -39567400 + AluSp SINE Alu 1 298 -15 249 359 77 48 chr3 178471313 178471561 -39565597 - MLT1I LTR MaLR -6 403 149 22 0 0 0 chr3 178472376 178472398 -39564760 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr3 178472452 178472491 -39564667 + AT_rich Low_complexity Low_complexity 1 39 0 281 231 88 54 chr3 178472498 178472645 -39564513 - MLT1G LTR MaLR 0 590 439 814 251 134 31 chr3 178472851 178473210 -39563948 + MSTD LTR MaLR 1 396 0 459 52 0 0 chr3 178474590 178474648 -39562510 + (TG)n Simple_repeat Simple_repeat 2 59 0 237 309 62 0 chr3 178475812 178475909 -39561249 - HAL1 LINE L1 -838 1669 1567 219 349 46 18 chr3 178476703 178476812 -39560346 + MIR SINE MIR 21 132 -130 2021 134 7 0 chr3 178477191 178477483 -39559675 - AluSg SINE Alu -16 294 1 412 258 8 31 chr3 178477705 178477833 -39559325 + L1MC5 LINE L1 7708 7832 -129 404 286 142 26 chr3 178478169 178478550 -39558608 - L1M4c LINE L1 -4820 1720 1296 224 290 35 76 chr3 178479243 178479388 -39557770 + L2 LINE L2 2920 3058 -214 325 367 84 27 chr3 178480108 178480476 -39556682 - L2 LINE L2 -1 3312 2924 203 156 133 0 chr3 178480490 178480535 -39556623 - MER91B DNA MER1_type -129 61 11 * 790 353 106 31 chr3 178480528 178481163 -39555995 - L2 LINE L2 -405 2909 2228 263 353 126 18 chr3 178481209 178481376 -39555782 - MIR SINE MIR -75 187 3 713 216 111 20 chr3 178481610 178481809 -39555349 + MER20 DNA MER1_type 1 217 -2 323 313 0 0 chr3 178481903 178481986 -39555172 + LTR67 LTR ERVL 2 84 -473 180 0 0 0 chr3 178482032 178482052 -39555106 + (T)n Simple_repeat Simple_repeat 1 20 0 256 346 66 7 chr3 178482262 178482398 -39554760 + LTR67 LTR ERVL 389 532 -25 251 102 68 0 chr3 178482664 178482723 -39554435 - LTR66 LTR ERVL -149 461 399 243 61 0 0 chr3 178482724 178482757 -39554401 + (CA)n Simple_repeat Simple_repeat 2 34 0 1095 131 0 4 chr3 178484011 178484226 -39552932 - L1PB1 LINE L1 0 6151 5896 21 71 0 0 chr3 178484553 178484595 -39552563 + AT_rich Low_complexity Low_complexity 1 42 0 1149 227 148 95 chr3 178484751 178485244 -39551914 - MLT2B1 LTR ERVL -1 519 1 30 69 0 0 chr3 178485467 178485525 -39551633 + AT_rich Low_complexity Low_complexity 1 58 0 626 174 9 9 chr3 178485864 178485979 -39551179 - FLAM_A SINE Alu -18 124 10 39 74 0 0 chr3 178486004 178486085 -39551073 + AT_rich Low_complexity Low_complexity 1 81 0 204 162 27 0 chr3 178489028 178489065 -39548093 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 21 36 0 0 chr3 178489222 178489250 -39547908 + AT_rich Low_complexity Low_complexity 1 28 0 209 189 0 0 chr3 178490482 178490519 -39546639 + (TG)n Simple_repeat Simple_repeat 1 37 0 439 325 13 6 chr3 178490688 178490845 -39546313 - MIR SINE MIR -1 261 104 4315 175 44 23 chr3 178492560 178493464 -39543694 + MER49 LTR ERV1 1 923 0 216 182 0 0 chr3 178495319 178495363 -39541795 + GA-rich Low_complexity Low_complexity 3 46 0 308 368 39 11 chr3 178495851 178496033 -39541125 + MIR SINE MIR 8 194 -68 237 182 0 0 chr3 178496761 178496816 -39540342 + GA-rich Low_complexity Low_complexity 3 57 0 30846 100 10 1 chr3 178497056 178501294 -39535864 + HERVK22 LTR ERVK 2562 6837 0 2007 221 67 4 chr3 178501294 178501773 -39535385 + LTR22 LTR ERVK 1 509 0 6104 195 47 25 chr3 178501773 178503013 -39534145 - L1M1 LINE L1 -551 5749 4273 243 0 0 0 chr3 178503013 178503040 -39534118 + (TG)n Simple_repeat Simple_repeat 2 28 0 6104 195 47 25 chr3 178503040 178503907 -39533251 - L1M1 LINE L1 -2027 4273 3427 21 0 0 0 chr3 178504337 178504358 -39532800 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr3 178505126 178505154 -39532004 + AT_rich Low_complexity Low_complexity 1 28 0 321 313 100 39 chr3 178505243 178505524 -39531634 - L1ME4a LINE L1 -240 5881 5584 1168 225 52 69 chr3 178505540 178505989 -39531169 - MER39 LTR ERV1 0 653 264 274 156 0 22 chr3 178506031 178506076 -39531082 + MER39 LTR ERV1 21 64 -643 247 241 0 0 chr3 178506079 178506133 -39531025 - MER39 LTR ERV1 -653 54 1 3579 122 51 14 chr3 178506860 178507448 -39529710 + MER4B LTR ERV1 1 610 0 2077 44 0 0 chr3 178507740 178507992 -39529166 + L1PA4 LINE L1 5903 6154 -1 264 355 41 0 chr3 178508067 178508188 -39528970 + MIR SINE MIR 120 245 -17 2512 64 6 0 chr3 178508217 178508546 -39528612 + L1PA7 LINE L1 5824 6154 0 1076 229 62 81 chr3 178510047 178510544 -39526614 - L1ME1 LINE L1 -5 6230 5743 1163 260 22 22 chr3 178510550 178510912 -39526246 - L1ME1 LINE L1 -1302 4913 4552 * 1641 257 106 50 chr3 178510905 178512335 -39524823 - L1ME1 LINE L1 -3148 3067 1518 2215 116 6 0 chr3 178512335 178512646 -39524512 - AluSp SINE Alu 0 313 1 1641 257 106 50 chr3 178512646 178512965 -39524193 - L1ME1 LINE L1 -4697 1518 1219 195 42 0 0 chr3 178513102 178513126 -39524032 + (CAA)n Simple_repeat Simple_repeat 2 25 0 27 49 0 0 chr3 178513127 178513168 -39523990 + AT_rich Low_complexity Low_complexity 1 41 0 32 57 0 0 chr3 178513336 178513389 -39523769 + AT_rich Low_complexity Low_complexity 1 53 0 1280 135 26 18 chr3 178513406 178513635 -39523523 - Tigger5 DNA MER2_type 0 2323 2093 28490 127 18 59 chr3 178513700 178520104 -39517054 + L1PA7 LINE L1 12 6143 -11 245 240 0 0 chr3 178520122 178520172 -39516986 - Tigger5 DNA MER2_type -2273 50 1 181 348 87 0 chr3 178521267 178521359 -39515799 - L2 LINE L2 0 3313 3214 2104 176 46 2 chr3 178521764 178522118 -39515040 + MSTA LTR MaLR 1 338 -90 234 105 0 0 chr3 178522118 178522156 -39515002 + (TA)n Simple_repeat Simple_repeat 2 39 0 243 0 0 0 chr3 178522161 178522188 -39514970 + (TG)n Simple_repeat Simple_repeat 2 28 0 2104 176 46 2 chr3 178522188 178522237 -39514921 + MSTA LTR MaLR 341 428 0 36 0 0 0 chr3 178522347 178522383 -39514775 + AT_rich Low_complexity Low_complexity 1 36 0 197 33 33 0 chr3 178523925 178523955 -39513203 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2142 84 7 3 chr3 178523967 178524254 -39512904 - AluY SINE Alu -23 288 1 22 0 0 0 chr3 178524943 178524965 -39512193 + AT_rich Low_complexity Low_complexity 1 22 0 1451 238 33 14 chr3 178525784 178526149 -39511009 - MLT1A2 LTR MaLR -2 372 1 2305 186 13 32 chr3 178526181 178526643 -39510515 - MER50 LTR ERV1 -33 701 249 1636 184 165 8 chr3 178526643 178527013 -39510145 + MSTA LTR MaLR 1 428 0 7182 210 23 32 chr3 178527033 178528606 -39508552 + MSTA-int LTR MaLR 93 1651 0 1649 155 188 8 chr3 178528608 178528969 -39508189 + MSTA LTR MaLR 3 428 0 1161 193 42 0 chr3 178528969 178529208 -39507950 - MER50 LTR ERV1 -485 249 1 1356 182 0 4 chr3 178529208 178529455 -39507703 - MER50-int LTR ERV1 -8 7197 6952 4218 85 28 25 chr3 178529455 178530482 -39506676 - MER11A LTR ERVK 0 1266 1 516 171 0 0 chr3 178530482 178530558 -39506600 - MER50-int LTR ERV1 -248 6957 6882 15759 189 42 16 chr3 178530569 178533708 -39503450 - MER50-int LTR ERV1 -1197 6008 2788 5562 178 22 19 chr3 178533704 178535314 -39501844 - MER50-int LTR ERV1 -5355 1850 38 * 4009 161 14 31 chr3 178535314 178536057 -39501101 - MER50 LTR ERV1 -4 730 1 21 71 0 0 chr3 178536490 178536532 -39500626 + AT_rich Low_complexity Low_complexity 1 42 0 1287 346 85 15 chr3 178536560 178537242 -39499916 + L2 LINE L2 576 1305 -2009 720 272 65 16 chr3 178537348 178537594 -39499564 + MER46C DNA MER2_type 80 337 -1 2668 166 51 4 chr3 178537676 178538306 -39498852 + MER67C LTR ERV1 4 710 0 827 317 114 76 chr3 178538311 178539308 -39497850 + L2 LINE L2 1566 2600 -714 210 377 109 29 chr3 178539457 178539632 -39497526 + L2 LINE L2 2866 3054 -259 461 221 149 64 chr3 178539656 178539905 -39497253 - L1MC4 LINE L1 -1286 6756 6487 1197 255 88 30 chr3 178540031 178540529 -39496629 - L1ME2 LINE L1 -8 6156 5630 15738 43 2 1 chr3 178540529 178543240 -39493918 - L1PA4 LINE L1 -4 6151 3438 2224 55 3 0 chr3 178543240 178543533 -39493625 + L1PA4 LINE L1 3169 3462 -2684 472 309 20 31 chr3 178543534 178543828 -39493330 - L1ME2 LINE L1 -523 5641 5351 309 254 16 74 chr3 178543846 178543968 -39493190 - L1ME2 LINE L1 -837 5309 5195 751 238 19 31 chr3 178543970 178544231 -39492927 - L1ME2 LINE L1 -1481 4665 4408 21 0 0 0 chr3 178544252 178544273 -39492885 + AT_rich Low_complexity Low_complexity 1 21 0 550 267 93 28 chr3 178544320 178544641 -39492517 - L1MD2 LINE L1 -89 6077 5901 372 231 38 65 chr3 178544612 178544798 -39492360 + L1MC5 LINE L1 7730 7910 -51 * 25 75 0 0 chr3 178545010 178545063 -39492095 + AT_rich Low_complexity Low_complexity 1 53 0 30 0 0 0 chr3 178545236 178545266 -39491892 + AT_rich Low_complexity Low_complexity 1 30 0 942 188 30 10 chr3 178545499 178545696 -39491462 + MER3 DNA MER1_type 9 209 0 21 0 0 0 chr3 178546970 178546991 -39490167 + AT_rich Low_complexity Low_complexity 1 21 0 267 103 0 0 chr3 178547115 178547154 -39490004 + (CATA)n Simple_repeat Simple_repeat 2 40 0 246 257 14 0 chr3 178547259 178547333 -39489825 + (TTTA)n Simple_repeat Simple_repeat 1 75 0 1648 165 6 41 chr3 178548544 178548859 -39488299 + AluSx SINE Alu 1 304 -8 285 242 0 0 chr3 178549878 178549969 -39487189 + (TA)n Simple_repeat Simple_repeat 2 92 0 1805 171 26 17 chr3 178550449 178550793 -39486365 - MER7A DNA MER2_type 0 346 2 1715 56 0 0 chr3 178551406 178551619 -39485539 - L1PA5 LINE L1 -221 5933 5721 1963 49 0 0 chr3 178551619 178551851 -39485307 + L1PA5 LINE L1 5910 6153 -1 248 286 88 22 chr3 178551897 178551988 -39485170 + LTR50 LTR ERVL 15 111 -684 877 229 8 34 chr3 178552004 178552240 -39484918 - MER58B DNA MER1_type 0 341 112 592 211 0 45 chr3 178552245 178552378 -39484780 - FLAM_A SINE Alu -4 138 12 296 329 0 0 chr3 178552378 178552454 -39484704 - MER58B DNA MER1_type -265 76 1 826 273 122 26 chr3 178552673 178552874 -39484284 + LTR50 LTR ERVL 379 559 -236 4620 105 23 15 chr3 178552874 178553559 -39483599 + LTR8 LTR ERV1 1 691 0 826 273 122 26 chr3 178553559 178553735 -39483423 + LTR50 LTR ERVL 559 792 -3 34 24 0 0 chr3 178554188 178554229 -39482929 + AT_rich Low_complexity Low_complexity 1 41 0 201 94 0 0 chr3 178554235 178554267 -39482891 + (TA)n Simple_repeat Simple_repeat 1 32 0 5416 170 85 20 chr3 178554385 178555059 -39482099 - L1PA15 LINE L1 -7 6158 5529 197 0 0 67 chr3 178555059 178555089 -39482069 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1820 132 8 4 chr3 178555089 178555355 -39481803 - AluSc SINE Alu -42 267 1 5416 170 85 20 chr3 178555355 178556514 -39480644 - L1PA15 LINE L1 -635 5530 4194 827 313 163 11 chr3 178556554 178556928 -39480230 + LTR16A LTR ERVL 18 448 -2 1333 57 6 6 chr3 178557041 178557240 -39479918 - AluY SINE Alu 0 304 106 261 251 69 28 chr3 178557337 178557419 -39479739 - MIR SINE MIR -97 111 26 182 314 70 35 chr3 178558907 178558993 -39478165 - MIR3 SINE MIR -44 164 76 2201 106 3 19 chr3 178559198 178559510 -39477648 - AluSp SINE Alu -6 307 1 591 302 84 22 chr3 178559950 178560225 -39476933 - MLT1J1 LTR MaLR -126 320 29 701 175 44 19 chr3 178560522 178560682 -39476476 - L1MA4 LINE L1 -9 6291 6128 849 236 16 26 chr3 178561093 178561240 -39475918 - MER5A DNA MER1_type 0 189 43 2302 209 14 72 chr3 178561240 178561890 -39475268 - LTR9 LTR ERV1 0 612 1 849 236 16 26 chr3 178561890 178561933 -39475225 - MER5A DNA MER1_type -146 43 1 513 267 110 28 chr3 178561942 178562197 -39474961 - HsTC2 DNA Tc2 -188 1710 1435 1333 236 64 6 chr3 178562414 178562757 -39474401 + MLT1A1 LTR MaLR 1 363 -2 2082 223 140 18 chr3 178563331 178564085 -39473073 - MER52C LTR ERV1 -303 975 1 2685 85 3 0 chr3 178564515 178564869 -39472289 + THE1A LTR MaLR 1 355 0 10892 116 5 2 chr3 178564869 178566445 -39470713 + THE1A-int LTR MaLR 1 1580 0 2388 104 26 0 chr3 178566445 178566791 -39470367 + THE1A LTR MaLR 1 355 0 990 211 0 25 chr3 178567817 178568021 -39469137 + L1PB4 LINE L1 5954 6152 -4 24 77 0 0 chr3 178568738 178568790 -39468368 + AT_rich Low_complexity Low_complexity 1 52 0 200 310 118 39 chr3 178568951 178569154 -39468004 + MIR SINE MIR 34 252 -10 753 334 128 61 chr3 178569356 178570309 -39466849 - L2 LINE L2 0 3313 2283 610 113 0 0 chr3 178570341 178570438 -39466720 + L1MA9 LINE L1 6216 6312 0 186 314 0 0 chr3 178571329 178571380 -39465778 - MIR SINE MIR -8 254 204 531 322 75 31 chr3 178572077 178572461 -39464697 + L1MA6 LINE L1 464 1986 -5500 1579 284 99 11 chr3 178572943 178573878 -39463280 + L1MA6 LINE L1 2176 2909 -4658 2057 164 83 2 chr3 178573878 178574274 -39462884 - MSTA LTR MaLR 0 428 1 1579 284 99 11 chr3 178574274 178574392 -39462766 + L1MA6 LINE L1 2909 3015 -4552 22 35 0 0 chr3 178574393 178574422 -39462736 + AT_rich Low_complexity Low_complexity 1 29 0 4983 209 31 3 chr3 178574547 178575664 -39461494 + L1MA6 LINE L1 4947 6095 -1470 1603 187 21 53 chr3 178575647 178576065 -39461093 + L1MA6 LINE L1 7310 7714 -5 * 1052 264 72 9 chr3 178576055 178576577 -39460581 + L1M3d LINE L1 3518 4075 -3490 * 2668 163 2 57 chr3 178576682 178577222 -39459936 - HERVL-B3 LTR ERVL -5144 510 1 1904 208 31 85 chr3 178577222 178577808 -39459350 - MLT2B3 LTR ERVL 0 554 1 599 193 21 52 chr3 178577813 178577929 -39459229 - L1 LINE L1 -1703 4443 4334 4656 44 7 29 chr3 178577929 178578206 -39458952 + L1PA7 LINE L1 5550 5832 -322 1861 138 11 0 chr3 178578206 178578545 -39458613 + AluSg SINE Alu 3 344 0 4656 44 7 29 chr3 178578545 178578885 -39458273 + L1PA7 LINE L1 5832 6154 0 599 193 21 52 chr3 178578885 178578960 -39458198 - L1 LINE L1 -1812 4334 4258 2255 198 110 4 chr3 178578960 178579470 -39457688 + L1M3d LINE L1 5105 5668 -1897 1060 255 28 8 chr3 178579470 178579823 -39457335 - L1 LINE L1 -3137 3009 2650 21 0 0 0 chr3 178579963 178579984 -39457174 + AT_rich Low_complexity Low_complexity 1 21 0 581 363 63 33 chr3 178580320 178580714 -39456444 + L2 LINE L2 19 424 -2890 268 326 0 11 chr3 178580727 178580816 -39456342 + L2 LINE L2 747 834 -2480 452 319 40 74 chr3 178580881 178581232 -39455926 + L2 LINE L2 830 1168 -2146 204 330 39 29 chr3 178581352 178581455 -39455703 - L2 LINE L2 -435 2879 2776 291 352 75 49 chr3 178581457 178581724 -39455434 + L2 LINE L2 2876 3149 -164 1397 259 49 101 chr3 178581726 178582298 -39454860 + MLT1F1 LTR MaLR 1 567 0 26 30 0 0 chr3 178582298 178582331 -39454827 + AT_rich Low_complexity Low_complexity 1 33 0 242 180 0 115 chr3 178582406 178582467 -39454691 + L2 LINE L2 3257 3310 -3 38 68 0 0 chr3 178582623 178582696 -39454462 + AT_rich Low_complexity Low_complexity 1 73 0 348 214 93 71 chr3 178582746 178582886 -39454272 + MIR3 SINE MIR 45 187 -21 28 61 0 0 chr3 178583340 178583389 -39453769 + AT_rich Low_complexity Low_complexity 1 49 0 49 52 0 0 chr3 178585190 178585267 -39451891 + AT_rich Low_complexity Low_complexity 1 77 0 1295 196 89 15 chr3 178585432 178585703 -39451455 + AluJb SINE Alu 1 291 -11 21 57 0 0 chr3 178585760 178585795 -39451363 + AT_rich Low_complexity Low_complexity 1 35 0 688 12 0 0 chr3 178586707 178586791 -39450367 - L1PA2 LINE L1 -4 6151 6068 3576 5 10 0 chr3 178586791 178587194 -39449964 + L1PA2 LINE L1 5460 5866 -289 2038 130 0 16 chr3 178587519 178587834 -39449324 + AluSx SINE Alu 3 312 0 1415 200 70 36 chr3 178588431 178588816 -39448342 - LTR1B LTR ERV1 0 826 401 1965 45 8 0 chr3 178588923 178589166 -39447992 + L1PA5 LINE L1 5903 6147 -7 333 0 0 0 chr3 178589167 178589204 -39447954 + (TA)n Simple_repeat Simple_repeat 1 37 0 430 350 126 11 chr3 178589212 178589475 -39447683 - L2 LINE L2 -1034 2280 1988 736 303 81 19 chr3 178589475 178589845 -39447313 - L2 LINE L2 -2273 1041 649 367 209 14 0 chr3 178590331 178590416 -39446742 - L1 LINE L1 -2303 3843 3758 1755 154 221 0 chr3 178591725 178592055 -39445103 + MER57A LTR ERV1 1 403 0 4968 168 13 6 chr3 178592055 178592891 -39444267 + MER57A-int LTR ERV1 1 842 -6695 380 250 22 140 chr3 178593337 178593565 -39443593 + MER57A-int LTR ERV1 1198 1398 -3725 5547 116 22 11 chr3 178593632 178595120 -39442038 - L1PA13 LINE L1 -2 6161 4662 528 206 47 140 chr3 178595186 178595400 -39441758 + MER57-int LTR ERV1 3247 3440 -2891 2185 118 13 0 chr3 178595546 178595852 -39441306 + AluSx SINE Alu 3 312 0 14803 153 47 28 chr3 178595852 178597153 -39440005 + MER57-int LTR ERV1 1731 3005 -4532 2239 119 0 0 chr3 178597153 178597455 -39439703 + AluSc SINE Alu 1 302 -7 14803 153 47 28 chr3 178597455 178597906 -39439252 + MER57-int LTR ERV1 3005 3446 -4091 315 0 0 0 chr3 178597906 178597941 -39439217 + (CA)n Simple_repeat Simple_repeat 2 36 0 14803 153 47 28 chr3 178597941 178599318 -39437840 + MER57-int LTR ERV1 3446 6974 -563 329 87 0 0 chr3 178599328 178599374 -39437784 + pTR5 LTR ERV1 349 394 -2044 21 95 0 0 chr3 178600387 178600450 -39436708 + AT_rich Low_complexity Low_complexity 1 63 0 2080 122 3 0 chr3 178600786 178601082 -39436076 + AluSg SINE Alu 1 297 -13 23 33 0 0 chr3 178601139 178601169 -39435989 + AT_rich Low_complexity Low_complexity 1 30 0 1074 259 118 73 chr3 178601601 178602083 -39435075 + LTR40a LTR ERVL 16 519 0 3467 164 19 5 chr3 178602168 178602798 -39434360 - L1PA16 LINE L1 -3 6163 5525 646 193 12 0 chr3 178603254 178603425 -39433733 + CT-rich Low_complexity Low_complexity 2 174 0 31 0 0 0 chr3 178603526 178603557 -39433601 + AT_rich Low_complexity Low_complexity 1 31 0 2020 196 23 18 chr3 178605192 178605589 -39431569 + L1MB3 LINE L1 2 400 -5984 1456 222 36 17 chr3 178605593 178605949 -39431209 + MLT1A1 LTR MaLR 1 363 -2 1991 248 65 75 chr3 178606109 178606723 -39430435 + MLT1A1-int LTR MaLR 1128 1735 0 1239 219 111 13 chr3 178606729 178607044 -39430114 + MLT1A1 LTR MaLR 13 358 -7 2428 123 25 3 chr3 178607044 178607411 -39429747 - THE1C LTR MaLR 0 375 1 8889 143 62 4 chr3 178607411 178608904 -39428254 - THE1C-int LTR MaLR 0 1580 2 2501 115 5 5 chr3 178608905 178609280 -39427878 - THE1C LTR MaLR 0 375 1 1592 193 142 29 chr3 178609296 178609747 -39427411 + L1MB3 LINE L1 425 926 -5458 502 93 0 0 chr3 178609771 178609846 -39427312 + L1PA7 LINE L1 6080 6154 0 4313 195 24 25 chr3 178609988 178611073 -39426085 - L1MA7 LINE L1 -3 6288 5206 1823 210 72 17 chr3 178611073 178611477 -39425681 + MSTB LTR MaLR 1 426 0 4313 195 24 25 chr3 178611477 178611683 -39425475 - L1MA7 LINE L1 -1085 5206 5001 1011 245 35 0 chr3 178611703 178611960 -39425198 + L1 LINE L1 3944 4209 -1937 1641 225 18 34 chr3 178611970 178612418 -39424740 - L1MA7 LINE L1 -2365 3781 3341 9427 181 23 10 chr3 178612419 178614178 -39422980 + Tigger4(Zombi) DNA MER2_type 2 1784 -947 1837 197 77 24 chr3 178614179 178614737 -39422421 + L1MB3 LINE L1 1386 2078 -4306 1916 230 77 14 chr3 178614743 178615654 -39421504 + L1MB3 LINE L1 2137 3106 -3276 2449 90 0 6 chr3 178615669 178616014 -39421144 + L1P LINE L1 3654 3996 -2150 889 270 38 11 chr3 178616015 178616459 -39420699 + L1MB3 LINE L1 3118 3573 -2809 6719 93 17 8 chr3 178616459 178617457 -39419701 - L1PA7 LINE L1 -812 5334 4328 6125 73 9 4 chr3 178617457 178618268 -39418890 + L1PA7 LINE L1 5330 6151 -3 877 238 62 7 chr3 178618269 178618542 -39418616 + L1MB3 LINE L1 3613 3900 -2482 1114 157 157 4 chr3 178618543 178618772 -39418386 + MER21A LTR ERV1 1 264 -667 2984 151 59 19 chr3 178618777 178619306 -39417852 + MER21A LTR ERV1 376 925 -6 1552 220 34 0 chr3 178619317 178619695 -39417463 + L1MB3 LINE L1 3902 4292 -2090 3316 195 72 37 chr3 178619697 178620619 -39416539 + L1MB3 LINE L1 5468 6419 0 2469 322 72 43 chr3 178620669 178621860 -39415298 + HERV16 LTR ERVL 1665 2890 -2106 21 0 0 0 chr3 178622000 178622021 -39415137 + AT_rich Low_complexity Low_complexity 1 21 0 1978 141 3 10 chr3 178622254 178622558 -39414600 - AluSx SINE Alu -10 302 1 342 308 52 41 chr3 178622915 178623087 -39414071 - HERVL LTR ERVL -1884 3770 3597 4641 161 39 50 chr3 178623229 178624214 -39412944 + Tigger3b DNA MER2_type 257 1230 -1 1059 219 48 71 chr3 178624399 178624792 -39412366 - LTR52 LTR ERVL -33 388 5 200 222 0 0 chr3 178625236 178625281 -39411877 + (TAA)n Simple_repeat Simple_repeat 2 46 0 26 0 0 0 chr3 178625419 178625445 -39411713 + AT_rich Low_complexity Low_complexity 1 26 0 1753 115 0 0 chr3 178625575 178625809 -39411349 + AluSx SINE Alu 1 234 -78 2035 147 10 0 chr3 178626565 178626864 -39410294 + AluSg SINE Alu 1 302 -8 896 278 12 92 chr3 178627023 178627437 -39409721 + MLT1D-int LTR MaLR 991 1371 0 437 176 70 99 chr3 178627437 178627579 -39409579 + MLT1D LTR MaLR 1 138 -488 22 0 0 0 chr3 178627584 178627606 -39409552 + AT_rich Low_complexity Low_complexity 1 22 0 588 175 90 175 chr3 178627606 178627840 -39409318 + MLT1D LTR MaLR 292 505 0 202 303 11 56 chr3 178628624 178628713 -39408445 + L2 LINE L2 2966 3050 -222 410 203 51 116 chr3 178629268 178629406 -39407752 + FLAM_A SINE Alu 1 129 -4 236 306 24 0 chr3 178629410 178629495 -39407663 - L1ME2 LINE L1 -24 6140 6054 1853 286 49 18 chr3 178629535 178630474 -39406684 - L1M4 LINE L1 -1113 5033 4066 2440 200 60 27 chr3 178630677 178630953 -39406205 + MER73 LTR ERVL 2 268 -376 351 0 0 0 chr3 178630953 178630992 -39406166 + (TG)n Simple_repeat Simple_repeat 1 39 0 231 36 0 0 chr3 178630998 178631026 -39406132 + (GA)n Simple_repeat Simple_repeat 2 29 0 2440 200 60 27 chr3 178631026 178631326 -39405832 + MER73 LTR ERVL 272 604 -40 33 43 0 0 chr3 178633054 178633101 -39404057 + AT_rich Low_complexity Low_complexity 1 47 0 20032 33 2 0 chr3 178633101 178636291 -39400867 - L1PA3 LINE L1 0 6155 2959 1525 145 113 28 chr3 178636472 178636755 -39400403 - AluSx SINE Alu 0 312 6 22 0 0 0 chr3 178636785 178636807 -39400351 + AT_rich Low_complexity Low_complexity 1 22 0 209 394 30 6 chr3 178636961 178637126 -39400032 - MIR SINE MIR -2 260 92 21 0 0 0 chr3 178638716 178638737 -39398421 + AT_rich Low_complexity Low_complexity 1 21 0 332 309 66 20 chr3 178639181 178639333 -39397825 + MER5A DNA MER1_type 30 188 -1 31 0 0 0 chr3 178639859 178639890 -39397268 + AT_rich Low_complexity Low_complexity 1 31 0 1350 142 37 0 chr3 178640263 178640531 -39396627 + L1MA4 LINE L1 6023 6300 0 2039 153 35 42 chr3 178640570 178640803 -39396355 + MER57A LTR ERV1 1 231 -172 2015 116 3 41 chr3 178640803 178641121 -39396037 - AluSq SINE Alu -7 306 1 2039 153 35 42 chr3 178641121 178641291 -39395867 + MER57A LTR ERV1 231 401 -2 2008 155 11 27 chr3 178642127 178642494 -39394664 - MER39 LTR ERV1 0 707 347 297 321 38 43 chr3 178642744 178642928 -39394230 + MER5A DNA MER1_type 1 183 -6 214 405 54 12 chr3 178643554 178643722 -39393436 + L2 LINE L2 1093 1267 -2047 201 167 0 0 chr3 178643743 178643779 -39393379 + A-rich Low_complexity Low_complexity 1 36 0 1695 241 107 12 chr3 178644119 178644707 -39392451 + LTR48B LTR ERV1 1 644 0 28 48 0 0 chr3 178645026 178645068 -39392090 + AT_rich Low_complexity Low_complexity 1 42 0 1408 245 76 25 chr3 178645882 178646318 -39390840 + MER39 LTR ERV1 250 707 0 656 203 89 84 chr3 178646722 178647091 -39390067 + LTR21B LTR ERV1 68 438 0 1417 237 55 15 chr3 178647107 178647640 -39389518 + HERVFH21 LTR ERV1 4 578 -5951 * 16693 187 21 22 chr3 178647636 178652396 -39384762 + HERVFH21 LTR ERV1 541 5333 -1196 720 275 0 5 chr3 178652720 178652913 -39384245 + LTR19-int LTR ERV1 4953 5144 -442 21 0 0 0 chr3 178653404 178653425 -39383733 + AT_rich Low_complexity Low_complexity 1 21 0 1887 95 39 21 chr3 178653665 178653949 -39383209 - AluSg1 SINE Alu 0 309 21 21 0 0 0 chr3 178654367 178654388 -39382770 + AT_rich Low_complexity Low_complexity 1 21 0 361 295 106 65 chr3 178655059 178655479 -39381679 + L1M2 LINE L1 609 1095 -5754 22 56 0 0 chr3 178655946 178655982 -39381176 + AT_rich Low_complexity Low_complexity 1 36 0 1943 121 32 0 chr3 178656447 178656729 -39380429 + AluSq SINE Alu 9 299 -14 1273 269 54 22 chr3 178656988 178657466 -39379692 + MLT1F LTR MaLR 6 488 -54 887 139 72 0 chr3 178657466 178657646 -39379512 + L1MA8 LINE L1 6074 6266 -25 660 286 63 17 chr3 178657679 178657917 -39379241 + MER63B DNA MER1_type 1 249 -187 640 116 256 0 chr3 178707947 178708076 -39329082 + MER4C LTR ERV1 304 465 0 2352 149 56 25 chr3 178708079 178708753 -39328405 + MER4C-int LTR ERV1 1 812 -5786 252 0 0 0 chr3 178708755 178708783 -39328375 + (GA)n Simple_repeat Simple_repeat 1 28 0 282 176 0 20 chr3 178708796 178708847 -39328311 + LTR49 LTR ERV1 264 313 -282 1113 181 61 9 chr3 178708847 178709087 -39328071 + MER4C-int LTR ERV1 865 1663 -4668 2591 80 99 14 chr3 178709088 178709501 -39327657 + LTR7 LTR ERV1 1 448 -2 4838 116 7 11 chr3 178709503 178710331 -39326827 + HERVH LTR ERV1 1 871 -6842 2070 103 7 4 chr3 178710813 178711122 -39326036 - AluSq SINE Alu 0 312 3 23 0 0 0 chr3 178711297 178711320 -39325838 + AT_rich Low_complexity Low_complexity 1 23 0 883 244 9 38 chr3 178711334 178711547 -39325611 - MER20 DNA MER1_type 0 219 13 23 33 0 0 chr3 178712504 178712534 -39324624 + AT_rich Low_complexity Low_complexity 1 30 0 1589 179 5 96 chr3 178712640 178713048 -39324110 - L1MC1 LINE L1 0 6333 5963 2091 200 66 2 chr3 178713048 178713532 -39323626 + L1MC/D LINE L1 5273 5787 -546 568 248 44 36 chr3 178713739 178713937 -39323221 + LTR1B LTR ERV1 318 512 -273 226 224 48 120 chr3 178714007 178714132 -39323026 + LTR28 LTR ERV1 905 1020 0 515 236 7 69 chr3 178714133 178714277 -39322881 + HUERS-P2 LTR ERV1 2 136 -2952 * 3184 229 27 29 chr3 178714261 178715030 -39322128 + HUERS-P2 LTR ERV1 631 1398 -1690 870 195 78 8 chr3 178715015 178715313 -39321845 + HUERS-P2 LTR ERV1 2467 6811 -280 * 916 156 45 57 chr3 178715348 178715533 -39321625 + MER4-int LTR ERV1 3524 3707 -2891 1756 170 14 3 chr3 178715533 178715822 -39321336 + AluSx SINE Alu 1 292 -20 916 156 45 57 chr3 178715822 178715880 -39321278 + MER4-int LTR ERV1 3707 3764 -2834 1584 200 39 28 chr3 178716835 178717195 -39319963 - MLT1B LTR MaLR 0 390 27 648 239 6 30 chr3 178717320 178717487 -39319671 + MER77 LTR ERV1 82 244 -361 395 265 10 20 chr3 178717632 178717734 -39319424 + MER77 LTR ERV1 505 605 0 21 0 0 0 chr3 178717828 178717849 -39319309 + AT_rich Low_complexity Low_complexity 1 21 0 773 243 53 29 chr3 178718339 178718545 -39318613 - MIR SINE MIR -50 212 2 207 0 0 0 chr3 178718549 178718572 -39318586 + (CA)n Simple_repeat Simple_repeat 2 24 0 398 346 93 9 chr3 178718642 178718856 -39318302 + MIR SINE MIR 13 244 -18 242 265 46 17 chr3 178720128 178720261 -39316897 - L1MC4a LINE L1 -1312 6496 6401 666 137 159 22 chr3 178720813 178721032 -39316126 - MER1B DNA MER1_type 0 339 2 643 262 72 56 chr3 178721232 178721716 -39315442 + L1ME LINE L1 494 985 -5085 25 0 0 0 chr3 178722600 178722625 -39314533 + AT_rich Low_complexity Low_complexity 1 25 0 426 203 25 0 chr3 178722856 178722974 -39314184 + (TA)n Simple_repeat Simple_repeat 1 121 0 2458 47 0 31 chr3 178723127 178723447 -39313711 + AluY SINE Alu 1 310 -1 23 0 0 0 chr3 178723535 178723558 -39313600 + AT_rich Low_complexity Low_complexity 1 23 0 1494 191 39 12 chr3 178723902 178724237 -39312921 - HERVS71 LTR ERV1 -8631 347 4 3398 86 92 2 chr3 178724240 178724752 -39312406 - LTR6B LTR ERV1 0 558 1 7267 128 3 7 chr3 178724752 178725820 -39311338 - HERVS71 LTR ERV1 -69 8909 7846 3812 196 15 29 chr3 178725929 178726868 -39310290 + MER4-int LTR ERV1 4599 5524 -1074 1539 207 7 0 chr3 178726871 178727156 -39310002 + AluSx SINE Alu 1 287 -25 6233 208 31 9 chr3 178728456 178729925 -39307233 + L1P LINE L1 2930 4431 -1715 747 235 45 64 chr3 178730074 178730448 -39306710 + L1ME2 LINE L1 5784 6150 -14 624 254 109 48 chr3 178730525 178731021 -39306137 - L1M4 LINE L1 -743 5403 4878 468 313 28 32 chr3 178731030 178731496 -39305662 - L1M4 LINE L1 -1843 4303 3840 616 178 164 0 chr3 178731625 178731771 -39305387 - LOR1b LTR ERV1 -291 170 1 981 189 19 15 chr3 178733233 178733439 -39303719 - MER4C LTR ERV1 -258 207 1 516 310 44 31 chr3 178733481 178733859 -39303299 + L1ME4a LINE L1 5494 5875 -246 263 291 115 27 chr3 178733987 178734135 -39303023 + MLT1J LTR MaLR 6 166 -345 1739 207 14 8 chr3 178734749 178735111 -39302047 - MLT1A1 LTR MaLR -1 364 1 306 0 0 0 chr3 178735683 178735717 -39301441 + (TG)n Simple_repeat Simple_repeat 2 35 0 29 0 0 0 chr3 178735979 178736008 -39301150 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr3 178736282 178736305 -39300853 + AT_rich Low_complexity Low_complexity 1 23 0 264 234 0 53 chr3 178737600 178737694 -39299464 + G-rich Low_complexity Low_complexity 1 89 0 192 257 40 27 chr3 178738507 178738581 -39298577 - MIR SINE MIR -146 116 42 1235 152 74 52 chr3 178739414 178739683 -39297475 + LTR49-int LTR ERV1 5208 5482 -849 2729 149 55 8 chr3 178739683 178740178 -39296980 + LTR19B LTR ERV1 1 518 -62 1537 97 67 26 chr3 178740182 178740450 -39296708 - L1PA7 LINE L1 -12 6142 5864 1794 261 50 53 chr3 178740554 178741315 -39295843 - L1MC4 LINE L1 -549 7493 6734 747 207 39 30 chr3 178741315 178741518 -39295640 - MER3 DNA MER1_type -4 205 1 1794 261 50 53 chr3 178741518 178741561 -39295597 - L1MC4 LINE L1 -1308 6734 6692 28 48 0 0 chr3 178743119 178743161 -39293997 + AT_rich Low_complexity Low_complexity 1 42 0 291 235 17 9 chr3 178743336 178743451 -39293707 + (TTATA)n Simple_repeat Simple_repeat 1 116 0 281 301 16 49 chr3 178745101 178745224 -39291934 + L2 LINE L2 794 912 -2402 189 457 0 0 chr3 178745426 178745520 -39291638 + L2 LINE L2 1159 1252 -2062 780 245 16 5 chr3 178745994 178746178 -39290980 + MIR SINE MIR 32 217 -45 676 243 109 18 chr3 178746444 178746728 -39290430 + MER33 DNA MER1_type 4 313 -11 577 228 114 29 chr3 178746850 178747096 -39290062 + LTR37B LTR ERV1 198 464 -4 629 306 86 13 chr3 178749025 178749643 -39287515 - L1M4 LINE L1 -2423 3723 3061 390 253 13 32 chr3 178749639 178749797 -39287361 - L1MCc LINE L1 -5009 1414 1260 * 1792 261 64 42 chr3 178750175 178750562 -39286596 + L1M4 LINE L1 2842 3219 -2927 1829 280 36 32 chr3 178750562 178751152 -39286006 + MLT1E LTR MaLR 2 593 0 1792 261 64 42 chr3 178751152 178751676 -39285482 + L1M4 LINE L1 3219 3773 -2373 201 279 0 0 chr3 178751682 178751725 -39285433 + (CATATA)n Simple_repeat Simple_repeat 6 48 0 211 239 0 0 chr3 178752241 178752287 -39284871 + T-rich Low_complexity Low_complexity 1 46 0 2127 128 3 0 chr3 178752379 178752685 -39284473 + AluSx SINE Alu 4 310 -2 1002 264 47 48 chr3 178752760 178753358 -39283800 + L1M4 LINE L1 3841 4437 -1709 207 0 0 0 chr3 178753490 178753513 -39283645 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1357 127 0 0 chr3 178753516 178753721 -39283437 - L1PB1 LINE L1 -13 6138 5934 38 22 0 0 chr3 178753804 178753849 -39283309 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr3 178754214 178754235 -39282923 + AT_rich Low_complexity Low_complexity 1 21 0 521 234 29 0 chr3 178754482 178754619 -39282539 - L1 LINE L1 -2165 3981 3841 1077 177 46 21 chr3 178754622 178754859 -39282299 - MER45R DNA AcHobo -823 758 516 303 200 17 0 chr3 178755089 178755149 -39282009 - L1ME LINE L1 -267 5854 5794 956 256 90 68 chr3 178755304 178755805 -39281353 + MLT1E3 LTR MaLR 1 512 -112 818 304 80 15 chr3 178756097 178756436 -39280722 + MLT1A1 LTR MaLR 3 363 -2 23 0 0 0 chr3 178756709 178756732 -39280426 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 178758063 178758086 -39279072 + AT_rich Low_complexity Low_complexity 1 23 0 1984 118 3 33 chr3 178758249 178758553 -39278605 + AluSq SINE Alu 1 295 -18 204 175 16 48 chr3 178758561 178758593 -39278565 + A-rich Low_complexity Low_complexity 4 35 -29 538 140 20 0 chr3 178758593 178758693 -39278465 + L1PA16 LINE L1 6065 6166 0 204 175 16 48 chr3 178758693 178758723 -39278435 + A-rich Low_complexity Low_complexity 35 64 0 231 36 0 0 chr3 178759125 178759153 -39278005 + (TG)n Simple_repeat Simple_repeat 1 28 0 1989 217 40 5 chr3 178759269 178759689 -39277469 + MSTB2 LTR MaLR 23 457 0 21 0 0 0 chr3 178760064 178760085 -39277073 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr3 178760177 178760207 -39276951 + AT_rich Low_complexity Low_complexity 1 30 0 1773 153 58 19 chr3 178760219 178760578 -39276580 - THE1C LTR MaLR 0 375 3 9781 139 28 8 chr3 178760580 178762114 -39275044 - THE1C-int LTR MaLR -1 1579 15 1618 151 60 46 chr3 178762114 178762484 -39274674 - THE1C LTR MaLR 0 375 1 2496 223 35 20 chr3 178762588 178763284 -39273874 + MER67C LTR ERV1 5 710 0 22 0 0 0 chr3 178763583 178763605 -39273553 + AT_rich Low_complexity Low_complexity 1 22 0 29 47 0 0 chr3 178763935 178763978 -39273180 + AT_rich Low_complexity Low_complexity 1 43 0 41 72 0 0 chr3 178764112 178764195 -39272963 + AT_rich Low_complexity Low_complexity 1 83 0 774 217 40 15 chr3 178764657 178764855 -39272303 - LTR56 LTR ERV1 -204 241 39 1419 266 55 34 chr3 178765124 178765835 -39271323 + L1MB8 LINE L1 891 1616 -4926 556 167 94 7 chr3 178765828 178765966 -39271192 + L1MB8 LINE L1 4448 4597 -2047 * 1894 201 82 50 chr3 178766002 178766540 -39270618 - LTR49 LTR ERV1 -40 555 1 2399 208 126 80 chr3 178766540 178767634 -39269524 + L1MB8 LINE L1 4600 5744 -900 260 208 14 69 chr3 178767635 178767707 -39269451 - LTR8 LTR ERV1 0 691 624 1003 228 0 8 chr3 178767743 178767984 -39269174 + L1MB8 LINE L1 6002 6240 -442 391 172 16 90 chr3 178767985 178768107 -39269051 - MER34B LTR ERV1 0 565 453 287 252 69 64 chr3 178768107 178768325 -39268833 - MER34B LTR ERV1 -81 484 266 242 226 0 0 chr3 178768518 178768571 -39268587 + L1MB8 LINE L1 6237 6289 -393 1082 221 147 11 chr3 178768604 178768952 -39268206 + L1MB8 LINE L1 6277 6671 -5 372 21 0 0 chr3 178769547 178769594 -39267564 + MADE1 DNA Mariner 1 47 -33 33 80 0 0 chr3 178770503 178770578 -39266580 + AT_rich Low_complexity Low_complexity 1 75 0 21 36 0 0 chr3 178770601 178770629 -39266529 + AT_rich Low_complexity Low_complexity 1 28 0 32 26 0 0 chr3 178770849 178770888 -39266270 + AT_rich Low_complexity Low_complexity 1 39 0 2175 110 0 10 chr3 178771629 178771930 -39265228 + AluSq SINE Alu 1 298 -15 27 73 0 0 chr3 178772900 178772955 -39264203 + AT_rich Low_complexity Low_complexity 1 55 0 2236 111 3 0 chr3 178773331 178773637 -39263521 - AluSx SINE Alu -5 307 1 2378 95 3 0 chr3 178774168 178774495 -39262663 - pTR5 LTR ERV1 -2042 396 69 321 224 31 20 chr3 178774498 178774596 -39262562 - LTR30 LTR ERV1 -80 642 544 3391 150 66 61 chr3 178774596 178775536 -39261622 - pTR5 LTR ERV1 -413 2025 742 183 261 0 22 chr3 178775539 178775585 -39261573 - L2 LINE L2 -198 3074 3030 585 328 74 12 chr3 178776486 178776990 -39260168 + ERVL LTR ERVL 4794 5335 -150 299 136 17 0 chr3 178777025 178777084 -39260074 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 283 277 64 0 chr3 178777762 178777856 -39259302 + LTR67 LTR ERVL 458 557 0 23 33 0 0 chr3 178778668 178778698 -39258460 + AT_rich Low_complexity Low_complexity 1 30 0 455 176 0 11 chr3 178779980 178780071 -39257087 + MER53 DNA DNA 98 187 -2 197 132 26 0 chr3 178782627 178782665 -39254493 + T-rich Low_complexity Low_complexity 4 42 0 2919 90 2 12 chr3 178782665 178783077 -39254081 - L1PA7 LINE L1 0 6154 5747 18458 97 13 2 chr3 178783170 178786246 -39250912 - L1PA7 LINE L1 -424 5730 2630 1235 160 0 0 chr3 178787169 178787356 -39249802 - L1PA16 LINE L1 -9 6157 5971 378 243 86 53 chr3 178787430 178787582 -39249576 + MIR SINE MIR 91 247 -15 2690 84 52 3 chr3 178788009 178788390 -39248768 + MLT2A1 LTR ERVL 1 400 -44 219 190 0 0 chr3 178788407 178788465 -39248693 + (TA)n Simple_repeat Simple_repeat 2 59 0 43 50 0 40 chr3 178788927 178788965 -39248193 + AT_rich Low_complexity Low_complexity 1 39 -58 1930 118 4 4 chr3 178788965 178789237 -39247921 + AluSx SINE Alu 1 272 -40 43 50 0 40 chr3 178789237 178789299 -39247859 + AT_rich Low_complexity Low_complexity 39 97 0 192 257 40 27 chr3 178790573 178790647 -39246511 - MIR SINE MIR -146 116 42 336 251 97 77 chr3 178791933 178792128 -39245030 - L1ME3A LINE L1 -45 6125 5927 * 641 276 100 39 chr3 178792110 178792676 -39244482 - L1ME3A LINE L1 -759 5387 4783 521 258 36 18 chr3 178792677 178792844 -39244314 - MIR SINE MIR -49 213 44 279 0 0 0 chr3 178793234 178793265 -39243893 + (A)n Simple_repeat Simple_repeat 1 31 0 2192 104 3 7 chr3 178793347 178793654 -39243504 - AluSc SINE Alu -3 306 1 1620 209 10 29 chr3 178795199 178795582 -39241576 - L1PA15 LINE L1 -8 6157 5782 216 97 0 0 chr3 178795650 178795681 -39241477 + (TG)n Simple_repeat Simple_repeat 1 31 0 291 191 0 0 chr3 178797242 178797305 -39239853 + (CA)n Simple_repeat Simple_repeat 2 64 0 1379 214 0 7 chr3 178797313 178797603 -39239555 - AluJb SINE Alu -24 288 1 476 170 28 0 chr3 178797605 178797711 -39239447 - MER45R DNA AcHobo -527 1054 946 4780 184 29 70 chr3 178797733 178800072 -39237086 - L1MA4 LINE L1 -8 6292 4046 22 0 0 0 chr3 178800381 178800403 -39236755 + AT_rich Low_complexity Low_complexity 1 22 0 1737 173 3 3 chr3 178800656 178800962 -39236196 - AluSx SINE Alu 0 312 7 616 151 28 0 chr3 178801102 178801208 -39235950 + AluJo/FLAM SINE Alu 1 109 -203 * 682 207 0 0 chr3 178801202 178801337 -39235821 + AluSp/q SINE Alu 178 312 -1 36 53 0 0 chr3 178801828 178801885 -39235273 + AT_rich Low_complexity Low_complexity 1 57 0 507 263 64 49 chr3 178802228 178802494 -39234664 + L1MD2 LINE L1 6080 6349 -10 1395 173 51 0 chr3 178802689 178802943 -39234215 - AluJb SINE Alu 0 312 46 238 364 40 20 chr3 178803964 178804063 -39233095 - L2 LINE L2 0 3272 3172 1282 297 66 12 chr3 178804209 178804727 -39232431 - MER90 LTR ERV1 -24 551 6 376 267 0 35 chr3 178804916 178805088 -39232070 + (CATATA)n Simple_repeat Simple_repeat 2 167 0 419 381 0 0 chr3 178805088 178805243 -39231915 + (TATATG)n Simple_repeat Simple_repeat 3 157 0 1853 172 39 3 chr3 178805253 178805584 -39231574 - MER7A DNA MER2_type -2 344 4 647 278 38 41 chr3 178805584 178805929 -39231229 + L1M4 LINE L1 2447 2790 -3356 354 168 109 10 chr3 178806081 178806182 -39230976 + L1M4 LINE L1 3869 3979 -2167 * 1259 249 73 136 chr3 178806169 178806610 -39230548 + L1MD3 LINE L1 5753 6220 -1822 186 71 0 0 chr3 178806610 178806638 -39230520 + (TA)n Simple_repeat Simple_repeat 2 29 0 1259 249 73 136 chr3 178806638 178807616 -39229542 + L1MD3 LINE L1 6220 7083 -959 376 234 72 9 chr3 178807645 178807756 -39229402 - L1MD3 LINE L1 -745 7250 7133 268 73 24 0 chr3 178807759 178807800 -39229358 + MER4A LTR ERV1 3 44 -620 1572 219 92 27 chr3 178807804 178808251 -39228907 + L1MD3 LINE L1 7487 7962 -33 13318 211 15 2 chr3 178809387 178813101 -39224057 - L1PA15 LINE L1 -6 7597 3842 1928 152 131 8 chr3 178813101 178813482 -39223676 + MSTA LTR MaLR 1 428 0 8728 160 21 39 chr3 178813484 178815086 -39222072 + MSTA-int LTR MaLR 3 1575 -5 1520 218 143 8 chr3 178815091 178815468 -39221690 + MSTA LTR MaLR 1 428 0 5987 252 47 25 chr3 178815470 178818014 -39219144 - L1PA15 LINE L1 -3740 3844 1269 21 95 0 0 chr3 178819335 178819398 -39217760 + AT_rich Low_complexity Low_complexity 1 63 0 347 292 80 15 chr3 178821054 178821191 -39215967 + MIR SINE MIR 46 191 -71 30 69 0 0 chr3 178821623 178821681 -39215477 + AT_rich Low_complexity Low_complexity 1 58 0 4767 204 31 13 chr3 178822323 178823341 -39213817 - L1MB3 LINE L1 0 6183 5125 2293 75 0 29 chr3 178823341 178823647 -39213511 + AluY SINE Alu 1 297 -14 4767 204 31 13 chr3 178823647 178824251 -39212907 - L1MB3 LINE L1 -1058 5125 4533 1651 151 0 4 chr3 178824251 178824509 -39212649 + AluSq SINE Alu 1 257 -56 700 255 13 6 chr3 178824510 178824667 -39212491 + LTR8 LTR ERV1 534 691 0 243 0 0 0 chr3 178824674 178824701 -39212457 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2318 107 35 61 chr3 178824701 178825031 -39212127 - L1P4 LINE L1 -484 5681 5361 2056 123 7 0 chr3 178825031 178825316 -39211842 + AluSq SINE Alu 1 287 -26 2318 107 35 61 chr3 178825316 178825406 -39211752 - L1P4 LINE L1 -804 5361 5270 2249 244 18 0 chr3 178825425 178825933 -39211225 - LTR53 LTR ERVL 0 519 3 26 0 0 0 chr3 178826391 178826417 -39210741 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr3 178827309 178827339 -39209819 + AT_rich Low_complexity Low_complexity 1 30 0 201 171 0 0 chr3 178827492 178827527 -39209631 + (TA)n Simple_repeat Simple_repeat 2 36 0 5032 166 39 4 chr3 178827711 178828870 -39208288 - L1PA16 LINE L1 0 6166 4970 25 51 0 0 chr3 178829021 178829060 -39208098 + AT_rich Low_complexity Low_complexity 1 39 0 2164 112 0 0 chr3 178830273 178830559 -39206599 + AluSq SINE Alu 3 288 -25 29 70 0 0 chr3 178830716 178830773 -39206385 + AT_rich Low_complexity Low_complexity 1 57 0 614 141 0 10 chr3 178831282 178831381 -39205777 + MER4A LTR ERV1 1 98 -566 1559 156 3 77 chr3 178831381 178831754 -39205404 + MER4A LTR ERV1 261 664 0 1866 97 94 67 chr3 178831757 178831969 -39205189 + MER4A-int LTR ERV1 1 227 -6371 1991 126 0 0 chr3 178831969 178832238 -39204920 - AluSx SINE Alu -23 289 21 1866 97 94 67 chr3 178832238 178832367 -39204791 + MER4A-int LTR ERV1 227 351 -6247 848 204 36 36 chr3 178832374 178832653 -39204505 + MER4A-int LTR ERV1 3403 3681 -2917 * 15293 121 53 18 chr3 178832652 178835319 -39201839 + MER4A-int LTR ERV1 3837 6597 -1 696 71 10 10 chr3 178835323 178835421 -39201737 + MER4A LTR ERV1 1 98 -566 1513 170 3 80 chr3 178835424 178835795 -39201363 + MER4A LTR ERV1 264 664 0 372 302 72 21 chr3 178835799 178835985 -39201173 + MLT1H LTR MaLR 1 166 -383 258 225 255 28 chr3 178836073 178836223 -39200935 + MLT1H1 LTR MaLR 364 553 -2 192 77 0 0 chr3 178837096 178837122 -39200036 + (A)n Simple_repeat Simple_repeat 1 26 0 25 0 0 0 chr3 178837340 178837365 -39199793 + AT_rich Low_complexity Low_complexity 1 25 0 237 308 15 0 chr3 178837410 178837543 -39199615 + (TA)n Simple_repeat Simple_repeat 1 135 0 7339 236 42 11 chr3 178837592 178841057 -39196101 - L1MC1 LINE L1 0 6613 3036 6855 183 71 30 chr3 178841055 178842714 -39194444 - L1MC1 LINE L1 -4561 1865 50 * 6514 202 164 12 chr3 178843009 178844533 -39192625 + MER52A LTR ERV1 1 1755 0 586 221 0 16 chr3 178844552 178844679 -39192479 - MLT1E LTR MaLR -8 585 461 270 245 69 29 chr3 178846699 178846776 -39190382 - LTR16C LTR ERVL 0 491 408 1616 202 36 22 chr3 178846776 178847132 -39190026 + MLT1A1 LTR MaLR 5 365 0 270 245 69 29 chr3 178847132 178847156 -39190002 - LTR16C LTR ERVL -83 408 386 1683 202 63 0 chr3 178847168 178847534 -39189624 + MLT1A1-int LTR MaLR 44 432 -1303 1298 199 44 37 chr3 178847534 178847831 -39189327 - AluJo SINE Alu -13 299 1 927 160 6 46 chr3 178847947 178847987 -39189171 - MLT2B3 LTR ERVL 0 554 514 976 23 8 8 chr3 178847987 178848115 -39189043 + (TAGA)n Simple_repeat Simple_repeat 2 129 0 927 160 6 46 chr3 178848115 178848249 -39188909 - MLT2B3 LTR ERVL -40 514 387 1634 248 39 126 chr3 178848262 178849399 -39187759 + MLT1A1-int LTR MaLR 476 1651 0 1624 209 40 11 chr3 178849399 178849748 -39187410 + MLT1A1 LTR MaLR 1 359 -6 2506 230 16 13 chr3 178849763 178849803 -39187355 - MLT2B3 LTR ERVL 0 554 516 470 17 17 0 chr3 178849803 178849862 -39187296 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 2506 230 16 13 chr3 178849862 178850373 -39186785 - MLT2B3 LTR ERVL -38 516 1 23 0 0 0 chr3 178851949 178851972 -39185186 + AT_rich Low_complexity Low_complexity 1 23 0 333 335 110 18 chr3 178852428 178852592 -39184566 + MIR SINE MIR 25 203 -59 404 307 88 21 chr3 178852652 178852844 -39184314 + MIR SINE MIR 46 250 -12 1138 278 86 25 chr3 178852880 178853312 -39183846 + MLT2B1 LTR ERVL 3 460 -60 846 271 48 5 chr3 178853347 178853554 -39183604 + MER82 DNA MER2_type 438 653 0 1768 132 4 21 chr3 178853558 178853839 -39183319 + AluSq SINE Alu 34 309 -4 252 206 23 0 chr3 178853841 178853972 -39183186 + (TA)n Simple_repeat Simple_repeat 2 135 0 1848 229 68 104 chr3 178854587 178855261 -39181897 + MER82 DNA MER2_type 4 653 0 957 159 52 132 chr3 178855352 178855678 -39181480 - L1MA3 LINE L1 0 6305 6006 226 333 75 48 chr3 178856361 178856508 -39180650 + MIR SINE MIR 5 155 -107 1707 212 13 7 chr3 178856865 178857222 -39179936 + MLT1A1 LTR MaLR 4 365 0 301 240 0 53 chr3 178857244 178857319 -39179839 + MER119 DNA MER1_type 513 583 0 701 174 30 60 chr3 178857598 178857765 -39179393 - MER3 DNA MER1_type -85 124 10 779 263 24 5 chr3 178858010 178858219 -39178939 - MER20 DNA MER1_type 0 219 7 391 329 49 24 chr3 178858794 178858958 -39178200 - MER5B DNA MER1_type 0 178 11 294 307 53 33 chr3 178860918 178861068 -39176090 + L2 LINE L2 3158 3310 -3 306 241 23 11 chr3 178861095 178861182 -39175976 + MIR SINE MIR 114 201 -61 220 284 74 42 chr3 178861371 178861466 -39175692 + MER5A DNA MER1_type 91 188 -1 4934 52 3 0 chr3 178861667 178862283 -39174875 - L1PA5 LINE L1 -1 6153 5536 4059 50 0 4 chr3 178862283 178862800 -39174358 + L1P LINE L1 4664 5178 -968 23 54 0 0 chr3 178863084 178863121 -39174037 + AT_rich Low_complexity Low_complexity 1 37 0 441 66 0 0 chr3 178865166 178865227 -39171931 + (TG)n Simple_repeat Simple_repeat 2 62 0 194 250 0 0 chr3 178865285 178865329 -39171829 + L2 LINE L2 1815 1858 -1456 4613 177 18 38 chr3 178865362 178866051 -39171107 - L1PB4 LINE L1 -6 6150 5448 1520 184 25 18 chr3 178866051 178866333 -39170825 + AluJb SINE Alu 1 284 -28 4613 177 18 38 chr3 178866333 178866538 -39170620 - L1PB4 LINE L1 -708 5448 5240 12791 28 1 0 chr3 178866538 178868831 -39168327 - L1PA4 LINE L1 -3 6152 3854 4613 177 18 38 chr3 178868831 178869347 -39167811 - L1PB4 LINE L1 -916 5240 4770 979 205 51 47 chr3 178869349 178869710 -39167448 - MSTB LTR MaLR -2 424 1 232 182 45 0 chr3 178869710 178869754 -39167404 - L1PB4 LINE L1 -1372 4774 4729 6769 220 25 9 chr3 178869764 178870821 -39166337 - L1PB4 LINE L1 -1388 4758 3720 279 0 0 0 chr3 178870821 178870852 -39166306 + (TG)n Simple_repeat Simple_repeat 2 32 0 6769 220 25 9 chr3 178870852 178871209 -39165949 - L1PB4 LINE L1 -2426 3720 3312 686 22 33 0 chr3 178871209 178871299 -39165859 + (GTATG)n Simple_repeat Simple_repeat 2 94 0 6769 220 25 9 chr3 178871299 178871487 -39165671 - L1PB4 LINE L1 -2834 3312 3129 795 263 43 20 chr3 178871552 178871853 -39165305 + L1MDa LINE L1 1867 2174 -4366 966 238 42 14 chr3 178871921 178872376 -39164782 + L1MDa LINE L1 2317 2790 -3750 349 290 55 22 chr3 178872566 178872749 -39164409 + L1MEc LINE L1 1410 1598 -4798 186 268 84 42 chr3 178873853 178873924 -39163234 + MIR SINE MIR 114 187 -75 289 261 22 22 chr3 178874243 178874335 -39162823 + CT-rich Low_complexity Low_complexity 1 92 0 25 83 0 0 chr3 178874707 178874767 -39162391 + AT_rich Low_complexity Low_complexity 1 60 0 27 0 0 0 chr3 178876306 178876333 -39160825 + AT_rich Low_complexity Low_complexity 1 27 0 455 300 75 37 chr3 178876604 178876991 -39160167 + L1MC/D LINE L1 5260 5660 -582 716 199 66 11 chr3 178876991 178877297 -39159861 + MSTD LTR MaLR 1 385 -11 29 0 0 25 chr3 178877346 178877365 -39159793 + AT_rich Low_complexity Low_complexity 1 19 -20 1889 96 0 0 chr3 178877365 178877614 -39159544 + AluY SINE Alu 37 285 -26 29 0 0 25 chr3 178877614 178877634 -39159524 + AT_rich Low_complexity Low_complexity 19 39 0 21 0 0 0 chr3 178878120 178878141 -39159017 + AT_rich Low_complexity Low_complexity 1 21 0 6282 164 13 13 chr3 178878203 178880313 -39156845 - L1MA2 LINE L1 0 7723 5614 3104 184 22 30 chr3 178880313 178880906 -39156252 - MER52A LTR ERV1 0 1755 1168 2898 207 146 22 chr3 178880881 178881592 -39155566 - MER52A LTR ERV1 -956 799 1 * 8317 198 38 10 chr3 178881593 178886869 -39150289 - L1MA2 LINE L1 -1949 5616 27 6774 186 73 64 chr3 178886967 178888602 -39148556 - MER52A LTR ERV1 0 1755 202 1496 257 54 60 chr3 178888605 178889134 -39148024 - L1M4c LINE L1 -4621 2338 1807 1797 159 0 0 chr3 178889134 178889424 -39147734 - AluSx SINE Alu -18 294 5 1496 257 54 60 chr3 178889424 178889990 -39147168 - L1M4c LINE L1 -5152 1807 1221 276 306 73 67 chr3 178890087 178890417 -39146741 - L1M4c LINE L1 -5667 1188 857 413 266 155 40 chr3 178890620 178890846 -39146312 - L1M4c LINE L1 -6579 280 29 305 225 150 25 chr3 178890868 178890948 -39146210 - ERVL LTR ERVL -2667 3097 3008 1097 338 46 21 chr3 178891238 178891756 -39145402 - ERVL LTR ERVL -3094 2670 2140 280 369 51 0 chr3 178891848 178892005 -39145153 - ERVL LTR ERVL -3071 1925 1761 377 380 34 8 chr3 178892119 178892385 -39144773 - ERVL LTR ERVL -4031 1623 1351 21 0 0 0 chr3 178892721 178892742 -39144416 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 178893114 178893138 -39144020 + AT_rich Low_complexity Low_complexity 1 24 0 24 67 0 0 chr3 178893358 178893403 -39143755 + AT_rich Low_complexity Low_complexity 1 45 0 331 333 0 11 chr3 178893587 178893680 -39143478 + L2 LINE L2 3204 3295 -18 23 0 0 0 chr3 178893716 178893739 -39143419 + AT_rich Low_complexity Low_complexity 1 23 0 1641 253 69 33 chr3 178893787 178894427 -39142731 - L1MC4 LINE L1 -142 7900 7238 589 236 43 19 chr3 178894506 178894667 -39142491 - MLT1C LTR MaLR 0 467 303 4582 151 15 1 chr3 178894679 178895459 -39141699 - L1PA16 LINE L1 -10 6156 5366 768 258 63 35 chr3 178895475 178895762 -39141396 - MLT1C LTR MaLR -172 295 1 922 305 23 20 chr3 178895762 178896106 -39141052 - L1MC4 LINE L1 -1027 7015 6671 21 36 0 0 chr3 178896470 178896498 -39140660 + AT_rich Low_complexity Low_complexity 1 28 0 294 229 108 37 chr3 178896527 178896741 -39140417 - L1MEc LINE L1 -3002 3213 2985 234 229 11 75 chr3 178897087 178897275 -39139883 + T-rich Low_complexity Low_complexity 5 180 0 1078 268 71 6 chr3 178897353 178897704 -39139454 - L1ME3A LINE L1 -61 6109 5736 571 294 109 18 chr3 178897751 178898027 -39139131 + L1ME LINE L1 5395 5695 -475 1767 177 0 16 chr3 178898074 178898384 -39138774 - AluSx SINE Alu -7 305 1 347 290 97 4 chr3 178898478 178898737 -39138421 - L1MEc LINE L1 -4846 1550 1268 245 198 62 31 chr3 178898923 178899019 -39138139 - L1MEc LINE L1 -5279 926 828 27 73 0 0 chr3 178901375 178901430 -39135728 + AT_rich Low_complexity Low_complexity 1 55 0 680 52 21 0 chr3 178902123 178902219 -39134939 + (CTATT)n Simple_repeat Simple_repeat 4 101 0 2542 75 0 6 chr3 178902364 178902710 -39134448 - L1PA7 LINE L1 0 6154 5811 305 145 16 0 chr3 178902766 178902828 -39134330 + (TA)n Simple_repeat Simple_repeat 2 64 0 35 54 0 0 chr3 178902830 178902886 -39134272 + AT_rich Low_complexity Low_complexity 1 56 0 554 74 0 12 chr3 178902918 178902999 -39134159 + (TA)n Simple_repeat Simple_repeat 1 80 0 24 53 0 0 chr3 178903291 178903329 -39133829 + AT_rich Low_complexity Low_complexity 1 38 0 456 19 0 0 chr3 178903899 178903952 -39133206 + (CA)n Simple_repeat Simple_repeat 1 53 0 27 62 0 0 chr3 178904687 178904735 -39132423 + AT_rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr3 178904930 178904954 -39132204 + AT_rich Low_complexity Low_complexity 1 24 0 384 344 108 15 chr3 178904999 178905194 -39131964 + LTR16A LTR ERVL 62 274 -176 3145 306 43 35 chr3 178905228 178906667 -39130491 + HERV16 LTR ERVL 3 1452 -3544 1780 141 23 0 chr3 178906828 178907091 -39130067 + AluSg SINE Alu 9 277 -33 273 57 0 0 chr3 178907092 178907127 -39130031 + (CAAT)n Simple_repeat Simple_repeat 4 38 0 993 353 53 19 chr3 178907129 178907710 -39129448 + HERV16 LTR ERVL 1666 2266 -2730 270 262 48 0 chr3 178907811 178907895 -39129263 + HERV16 LTR ERVL 2288 2375 -2621 934 340 100 52 chr3 178907936 178909014 -39128144 + HERV16 LTR ERVL 2425 3095 -1901 285 330 62 23 chr3 178909163 178909339 -39127819 + HERV16 LTR ERVL 3725 3907 -1747 863 232 17 8 chr3 178909339 178909550 -39127608 + MLT1D LTR MaLR 1 185 -320 1055 95 47 0 chr3 178909599 178909768 -39127390 - L1PA2 LINE L1 -6 6149 5973 368 277 133 58 chr3 178909799 178909987 -39127171 - L1ME LINE L1 -4798 1282 1081 628 276 71 70 chr3 178909999 178910066 -39127092 - L1ME LINE L1 -5036 1225 1160 180 0 0 0 chr3 178910066 178910086 -39127072 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 628 276 71 70 chr3 178910086 178910670 -39126488 - L1ME LINE L1 -5101 1160 530 397 261 0 0 chr3 178910783 178910871 -39126287 - AluS SINE Alu -214 88 1 4548 180 54 7 chr3 178910871 178912076 -39125082 + L1PA16 LINE L1 4901 6164 -2 256 247 55 0 chr3 178912167 178912240 -39124918 - L1ME LINE L1 -5596 474 398 405 238 61 61 chr3 178912402 178912549 -39124609 - L1ME LINE L1 -5905 165 19 2563 149 14 2 chr3 178912624 178913047 -39124111 + MSTA LTR MaLR 1 428 0 211 373 51 34 chr3 178913060 178913178 -39123980 - L2 LINE L2 -37 3235 3116 523 167 10 10 chr3 178913540 178913642 -39123516 - L1P LINE L1 -1787 4359 4258 6601 47 2 0 chr3 178913643 178914456 -39122702 + L1PA5 LINE L1 5340 6154 0 275 268 36 54 chr3 178914557 178914669 -39122489 - MIR SINE MIR -34 228 119 35 0 0 0 chr3 178914964 178914999 -39122159 + AT_rich Low_complexity Low_complexity 1 35 0 185 374 132 35 chr3 178915010 178915237 -39121921 - L3 LINE CR1 -1270 307 59 237 323 79 24 chr3 178915998 178916125 -39121033 + LTR33A LTR ERVL 54 187 -336 207 217 0 72 chr3 178916472 178916555 -39120603 + T-rich Low_complexity Low_complexity 2 78 0 338 326 107 0 chr3 178916652 178916830 -39120328 - MIR SINE MIR 0 262 66 1753 137 5 106 chr3 178918463 178918850 -39118308 - MER7A DNA MER2_type 0 346 1 202 95 48 0 chr3 178919216 178919258 -39117900 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 925 213 10 48 chr3 178920277 178920484 -39116674 - MER58A DNA MER1_type -1 223 25 381 308 15 103 chr3 178922673 178922868 -39114290 + L3 LINE CR1 1385 1562 -15 190 368 38 0 chr3 178923113 178923219 -39113939 - MIR3 SINE MIR -8 200 91 369 0 0 0 chr3 178924060 178924101 -39113057 + (TC)n Simple_repeat Simple_repeat 2 42 0 284 181 155 35 chr3 178924787 178924903 -39112255 + LTR16C LTR ERVL 362 491 0 2037 125 53 39 chr3 178925053 178925412 -39111746 - THE1B LTR MaLR 0 364 1 25 51 0 0 chr3 178926109 178926148 -39111010 + AT_rich Low_complexity Low_complexity 1 39 0 25 51 0 0 chr3 178926190 178926229 -39110929 + AT_rich Low_complexity Low_complexity 1 39 0 1281 256 67 0 chr3 178926460 178926773 -39110385 - MER58B DNA MER1_type -7 334 1 2310 86 3 0 chr3 178927009 178927301 -39109857 + AluSp SINE Alu 2 294 -19 2377 87 0 3 chr3 178927457 178927768 -39109390 - AluY SINE Alu -1 310 1 211 374 12 12 chr3 178928032 178928115 -39109043 - L3 LINE CR1 -452 1125 1043 203 139 0 47 chr3 178928293 178928336 -39108822 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 216 121 52 17 chr3 178929293 178929351 -39107807 + (TA)n Simple_repeat Simple_repeat 1 60 0 306 73 0 0 chr3 178929377 178929418 -39107740 + (TG)n Simple_repeat Simple_repeat 1 41 0 658 91 0 20 chr3 178929674 178929773 -39107385 - L1MA3 LINE L1 -2 6303 6207 2435 269 67 19 chr3 178929899 178931097 -39106061 - L1ME3A LINE L1 -5 6165 4890 2095 110 0 27 chr3 178931097 178931396 -39105762 - AluSq SINE Alu -22 291 1 2435 269 67 19 chr3 178931396 178931516 -39105642 - L1ME3A LINE L1 -1280 4890 4777 800 266 37 107 chr3 178931789 178931983 -39105175 - L1MC4 LINE L1 -1135 6907 6701 243 103 0 0 chr3 178931983 178932022 -39105136 + (TG)n Simple_repeat Simple_repeat 2 40 0 800 266 37 107 chr3 178932022 178932285 -39104873 - L1MC4 LINE L1 -1341 6701 6482 689 299 85 44 chr3 178933051 178933462 -39103696 - MLT1J1 LTR MaLR -2 444 17 235 250 67 0 chr3 178933730 178933790 -39103368 + L1MC/D LINE L1 5595 5658 -2150 241 47 47 0 chr3 178934231 178934274 -39102884 + (TA)n Simple_repeat Simple_repeat 2 46 0 234 206 0 0 chr3 178934775 178934838 -39102320 + (TA)n Simple_repeat Simple_repeat 2 64 0 2498 61 0 3 chr3 178935021 178935333 -39101825 + AluY SINE Alu 1 311 0 21 0 0 0 chr3 178935480 178935501 -39101657 + AT_rich Low_complexity Low_complexity 1 21 0 515 16 16 0 chr3 178935601 178935665 -39101493 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 5574 146 14 7 chr3 178935848 178936808 -39100350 + L1MA4 LINE L1 5335 6300 0 37 69 0 0 chr3 178938041 178938113 -39099045 + AT_rich Low_complexity Low_complexity 1 72 0 27 0 0 0 chr3 178938196 178938223 -39098935 + AT_rich Low_complexity Low_complexity 1 27 0 210 311 96 23 chr3 178938457 178938634 -39098524 + L2 LINE L2 2401 2590 -724 265 336 55 23 chr3 178938652 178938780 -39098378 + MIR SINE MIR 9 140 -122 184 338 40 0 chr3 178939497 178939571 -39097587 + L2 LINE L2 3160 3236 -77 673 202 0 0 chr3 178939894 178940013 -39097145 + FRAM SINE Alu 43 161 -15 1564 213 68 41 chr3 178940017 178940431 -39096727 - L1MD3 LINE L1 -33 7962 7538 26 0 0 0 chr3 178941156 178941182 -39095976 + AT_rich Low_complexity Low_complexity 1 26 0 36 23 0 0 chr3 178941495 178941538 -39095620 + AT_rich Low_complexity Low_complexity 1 43 0 37 23 0 0 chr3 178941909 178941953 -39095205 + AT_rich Low_complexity Low_complexity 1 44 0 2121 102 0 0 chr3 178942105 178942415 -39094743 + AluSg SINE Alu 3 312 0 1568 194 46 54 chr3 178942738 178942950 -39094208 + Charlie1b DNA MER1_type 68 280 -2481 1780 133 7 41 chr3 178942950 178943286 -39093872 - AluSx SINE Alu 0 326 1 1568 194 46 54 chr3 178943286 178943532 -39093626 + Charlie1b DNA MER1_type 280 523 0 399 311 99 35 chr3 178943543 178943887 -39093271 - MLT1L LTR MaLR -143 472 107 24 67 0 0 chr3 178944138 178944183 -39092975 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr3 178944857 178944878 -39092280 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 178944975 178944996 -39092162 + AT_rich Low_complexity Low_complexity 1 21 0 1830 142 3 3 chr3 178946588 178946883 -39090275 + AluSx SINE Alu 5 299 -13 334 286 103 22 chr3 178947545 178947769 -39089389 + HAL1b LINE L1 259 500 -848 306 316 81 15 chr3 178947952 178948088 -39089070 + HAL1b LINE L1 696 840 -508 437 248 29 0 chr3 178948558 178948663 -39088495 + FLAM_C SINE Alu 1 108 -35 836 310 96 19 chr3 178948978 178949559 -39087599 + L1MC4a LINE L1 5255 5880 -1928 7063 191 46 31 chr3 178949643 178950052 -39087106 + L1M4c LINE L1 127 528 -5856 2207 98 3 0 chr3 178950052 178950357 -39086801 + AluSg SINE Alu 1 306 -4 7063 191 46 31 chr3 178950357 178951556 -39085602 + L1M4c LINE L1 528 1759 -4625 2230 99 7 0 chr3 178951736 178952039 -39085119 - AluSq SINE Alu -8 305 1 271 146 0 0 chr3 178952183 178952231 -39084927 - L1MC1 LINE L1 -3 6330 6283 22 35 0 0 chr3 178952255 178952284 -39084874 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr3 178952853 178952884 -39084274 + AT_rich Low_complexity Low_complexity 1 31 0 1553 113 65 0 chr3 178953065 178953296 -39083862 - AluSc SINE Alu -15 294 49 21 36 0 0 chr3 178953366 178953394 -39083764 + AT_rich Low_complexity Low_complexity 1 28 0 289 233 0 126 chr3 178954118 178954202 -39082956 + MER3 DNA MER1_type 31 101 -61 1504 172 9 72 chr3 178954202 178954533 -39082625 + AluJo SINE Alu 1 310 -2 289 233 0 126 chr3 178954533 178954551 -39082607 + MER3 DNA MER1_type 101 120 -89 698 29 70 23 chr3 178954556 178954727 -39082431 + (TA)n Simple_repeat Simple_repeat 2 180 0 5253 136 11 31 chr3 178954742 178955564 -39081594 - L1PA13 LINE L1 -23 6140 5331 2231 110 3 0 chr3 178955564 178955865 -39081293 - AluY SINE Alu -9 302 1 5253 136 11 31 chr3 178955865 178956070 -39081088 - L1PA13 LINE L1 -832 5331 5123 4462 199 16 12 chr3 178956053 178957055 -39080103 - L1P LINE L1 -840 5306 4301 * 256 71 18 18 chr3 178957055 178957111 -39080047 + MER3 DNA MER1_type 118 126 -83 288 365 54 31 chr3 178957115 178957337 -39079821 - LTR16C LTR ERVL -9 482 256 248 359 111 8 chr3 178957653 178957887 -39079271 - L2 LINE L2 -74 3239 2982 264 324 28 19 chr3 178958895 178959003 -39078155 + L2 LINE L2 3153 3261 -11 313 331 89 23 chr3 178959168 178959425 -39077733 + L2 LINE L2 2434 2707 -607 1377 244 106 67 chr3 178959519 178960219 -39076939 - LTR8A LTR ERV1 0 727 1 382 285 155 61 chr3 178960263 178960540 -39076618 + L2 LINE L2 3008 3310 -3 257 374 41 8 chr3 178960659 178960782 -39076376 + L2 LINE L2 2947 3073 -240 1435 189 55 79 chr3 178961049 178961615 -39075543 - LTR28 LTR ERV1 0 1020 334 375 239 132 61 chr3 178961606 178961803 -39075355 - LTR28 LTR ERV1 -602 418 208 * 352 258 76 22 chr3 178961770 178961932 -39075226 - LTR28 LTR ERV1 -286 755 1 * 22 80 0 0 chr3 178962981 178963031 -39074127 + AT_rich Low_complexity Low_complexity 1 50 0 1276 273 70 14 chr3 178963549 178963978 -39073180 - LTR40a LTR ERVL 0 519 67 885 194 31 21 chr3 178964656 178964847 -39072311 + MER34 LTR ERV1 1 193 -349 654 135 4 3 chr3 178964847 178965077 -39072081 + AluSx SINE Alu 1 297 -15 468 0 0 0 chr3 178965083 178965135 -39072023 + (TA)n Simple_repeat Simple_repeat 2 53 0 285 29 0 0 chr3 178965236 178965270 -39071888 + (CA)n Simple_repeat Simple_repeat 1 34 0 648 282 18 0 chr3 178965313 178965483 -39071675 + MER34 LTR ERV1 370 542 0 1527 214 0 16 chr3 178965835 178966143 -39071015 - AluJb SINE Alu -7 305 3 365 230 237 7 chr3 178966285 178966437 -39070721 - L1MC5 LINE L1 -48 7913 7727 25 0 0 0 chr3 178966545 178966570 -39070588 + AT_rich Low_complexity Low_complexity 1 25 0 767 228 124 38 chr3 178966779 178967156 -39070002 - LTR8 LTR ERV1 -276 451 3 2109 124 13 0 chr3 178967181 178967480 -39069678 - AluSx SINE Alu -9 303 1 6523 244 57 63 chr3 178967834 178970160 -39066998 - L1 LINE L1 -1306 4840 2528 1445 183 21 0 chr3 178970161 178970445 -39066713 + L1MB1 LINE L1 5868 6157 -11 727 282 113 20 chr3 178970669 178971066 -39066092 + MER57B LTR ERV1 1 434 0 519 267 32 60 chr3 178971073 178971290 -39065868 + MER57B-int LTR ERV1 5 215 -7322 1491 250 77 44 chr3 178971330 178972121 -39065037 + MER110-int LTR ERV1 1277 1962 -2974 411 211 93 97 chr3 178972177 178972585 -39064573 + MER110-int LTR ERV1 2099 3183 -1697 373 200 25 75 chr3 178972572 178972692 -39064466 + MER110-int LTR ERV1 3838 3951 -2647 * 417 326 75 41 chr3 178972963 178973374 -39063784 + MER110-int LTR ERV1 2477 2901 -1746 1286 331 67 32 chr3 178974024 178974815 -39062343 + MER110-int LTR ERV1 6294 7112 -425 886 270 127 22 chr3 178974837 178975192 -39061966 + MER57A LTR ERV1 3 394 -9 272 160 20 0 chr3 178975550 178975600 -39061558 + L1M3 LINE L1 721 771 -5613 1911 186 62 11 chr3 178975604 178976286 -39060872 + L1M3 LINE L1 5136 5851 -565 646 12 24 0 chr3 178977159 178977242 -39059916 + (TCTA)n Simple_repeat Simple_repeat 1 85 0 1710 103 91 0 chr3 178977243 178977496 -39059662 - AluSc SINE Alu -31 278 3 352 275 215 43 chr3 178977543 178977628 -39059530 + MLT1E2 LTR MaLR 1 70 -556 1517 189 14 11 chr3 178977628 178977903 -39059255 + AluJb SINE Alu 4 279 -33 288 0 0 0 chr3 178977903 178977935 -39059223 + (CA)n Simple_repeat Simple_repeat 1 32 0 352 275 215 43 chr3 178977935 178978081 -39059077 + MLT1E2 LTR MaLR 69 273 -353 369 290 16 8 chr3 178978163 178978287 -39058871 + MLT1E2 LTR MaLR 270 394 -230 500 238 8 16 chr3 178978292 178978418 -39058740 + MER34 LTR ERV1 26 150 -392 918 89 16 0 chr3 178978418 178978541 -39058617 + AluSg/x SINE Alu 176 300 -12 1017 241 64 18 chr3 178978542 178978894 -39058264 + MER34 LTR ERV1 142 542 0 733 266 83 0 chr3 178978902 178979120 -39058038 + MLT1E2 LTR MaLR 391 626 0 420 224 53 90 chr3 178980723 178981022 -39056136 - L1M4 LINE L1 -892 5254 4967 1058 215 108 15 chr3 178982211 178982471 -39054687 + MLT1A1 LTR MaLR 14 297 -68 268 85 106 0 chr3 178982471 178982518 -39054640 + MADE1 DNA Mariner 1 52 -28 359 222 0 0 chr3 178982550 178982622 -39054536 + MLT1A1 LTR MaLR 294 365 0 205 262 0 0 chr3 178983431 178983473 -39053685 + polypyrimidine Low_complexity Low_complexity 2 43 0 207 288 45 0 chr3 178983770 178983836 -39053322 + MIR SINE MIR 130 198 -64 229 276 26 13 chr3 178983910 178983986 -39053172 + MLT1J LTR MaLR 113 189 -322 2011 126 0 23 chr3 178984007 178984317 -39052841 + AluSx SINE Alu 3 305 -7 1380 223 52 58 chr3 178985100 178985475 -39051683 + MLT1B LTR MaLR 1 374 -11 1783 156 32 111 chr3 178985475 178985936 -39051222 - MSTB LTR MaLR 0 426 2 180 0 0 0 chr3 178986325 178986345 -39050813 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1042 160 0 0 chr3 178987153 178987309 -39049849 - FRAM SINE Alu -20 156 1 276 30 0 0 chr3 178987737 178987770 -39049388 + (TG)n Simple_repeat Simple_repeat 2 34 0 23 33 0 0 chr3 178988463 178988493 -39048665 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr3 178988705 178988733 -39048425 + AT_rich Low_complexity Low_complexity 1 28 0 33 56 0 0 chr3 178988844 178988898 -39048260 + AT_rich Low_complexity Low_complexity 1 54 0 215 288 8 17 chr3 178988954 178989072 -39048086 + (TA)n Simple_repeat Simple_repeat 2 118 0 270 0 0 0 chr3 178989097 178989127 -39048031 + (TA)n Simple_repeat Simple_repeat 1 30 0 1049 76 0 0 chr3 178989952 178990084 -39047074 + AluY SINE Alu 1 132 -179 1140 265 93 64 chr3 178991614 178992177 -39044981 - MLT1E LTR MaLR -3 590 25 1087 222 52 0 chr3 178992177 178992407 -39044751 + MLT1B LTR MaLR 1 242 -148 1254 208 123 20 chr3 178992540 178992896 -39044262 + MER39 LTR ERV1 175 703 -4 271 292 58 36 chr3 178992982 178993119 -39044039 + MER39-int LTR ERV1 77 216 -6115 401 283 153 6 chr3 178993198 178993375 -39043783 + MER39-int LTR ERV1 366 568 -5763 1819 170 6 6 chr3 178993568 178993880 -39043278 - AluJo SINE Alu 0 312 1 702 195 47 105 chr3 178993880 178993993 -39043165 + MER39-int LTR ERV1 1426 1544 -4787 1808 171 0 0 chr3 178993993 178994292 -39042866 + AluSx SINE Alu 1 299 -13 702 195 47 105 chr3 178994292 178994435 -39042723 + MER39-int LTR ERV1 1544 1667 -4664 24 67 0 0 chr3 178994466 178994511 -39042647 + AT_rich Low_complexity Low_complexity 1 45 0 1193 252 66 76 chr3 178994592 178995156 -39042002 + MER31-int LTR ERV1 308 865 -4071 396 0 0 0 chr3 178995320 178995364 -39041794 + (CA)n Simple_repeat Simple_repeat 1 44 0 1243 191 46 79 chr3 178995452 178995998 -39041160 + MER31-int LTR ERV1 1037 2120 -2751 5435 212 77 69 chr3 178996163 178996763 -39040395 + MER31-int LTR ERV1 1721 2315 -2621 3176 98 20 7 chr3 178996763 178997210 -39039948 - MLT2A2 LTR ERVL 0 453 1 5435 212 77 69 chr3 178997210 178998843 -39038315 + MER31-int LTR ERV1 2315 3874 -1062 4539 15 0 0 chr3 178998850 178999372 -39037786 - L1PA2 LINE L1 -349 5806 5285 2883 18 0 3 chr3 178999372 178999708 -39037450 + L1PA2 LINE L1 5805 6139 -16 729 221 39 9 chr3 178999811 179000042 -39037116 + L1MDa LINE L1 2317 2554 -3986 180 125 0 0 chr3 179000174 179000206 -39036952 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 420 139 70 124 chr3 179000216 179000345 -39036813 + MER31-int LTR ERV1 3869 3990 -946 1423 176 57 81 chr3 179050992 179051413 -38985745 + MLT1C LTR MaLR 1 411 -56 430 158 0 26 chr3 179051567 179051643 -38985515 + FRAM SINE Alu 73 146 -30 33 0 0 0 chr3 179051679 179051712 -38985446 + AT_rich Low_complexity Low_complexity 1 33 0 6198 35 3 0 chr3 179051907 179052648 -38984510 - L1PA4 LINE L1 0 6155 5413 247 176 0 0 chr3 179054193 179054244 -38982914 + L1MDa LINE L1 2880 2930 -3610 286 202 53 44 chr3 179054545 179054659 -38982499 + L1MDa LINE L1 3336 3450 -3090 333 324 144 16 chr3 179054707 179054957 -38982201 + L1MDa LINE L1 3956 4237 -2303 526 265 76 67 chr3 179055433 179055893 -38981265 + L1M4 LINE L1 4739 5202 -944 212 307 175 18 chr3 179056914 179057028 -38980130 - L2 LINE L2 0 3272 3141 208 227 23 0 chr3 179057146 179057190 -38979968 + MIR SINE MIR 4 48 -214 1566 211 36 3 chr3 179057851 179058187 -38978971 - MER7A DNA MER2_type -1 345 1 202 314 203 17 chr3 179059281 179059399 -38977759 + MIR SINE MIR 66 205 -57 3130 55 0 20 chr3 179060091 179060490 -38976668 + MLT2A1 LTR ERVL 1 391 -53 435 83 0 0 chr3 179060498 179060558 -38976600 + (TA)n Simple_repeat Simple_repeat 1 60 0 750 231 159 35 chr3 179060576 179060902 -38976256 - MSTD LTR MaLR 0 396 1 812 330 72 8 chr3 179061268 179061629 -38975529 + LTR16C LTR ERVL 71 454 -37 29 0 0 0 chr3 179062020 179062049 -38975109 + AT_rich Low_complexity Low_complexity 1 29 0 315 71 0 0 chr3 179062049 179062091 -38975067 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1851 156 0 0 chr3 179062093 179062375 -38974783 - AluSx SINE Alu -30 282 1 576 192 7 13 chr3 179063130 179063281 -38973877 + CT-rich Low_complexity Low_complexity 2 151 0 439 370 43 22 chr3 179065231 179065553 -38971605 + HERVL LTR ERVL 4468 4796 -858 573 112 9 19 chr3 179066209 179066316 -38970842 + (TTCC)n Simple_repeat Simple_repeat 3 108 0 2367 164 20 7 chr3 179066323 179066762 -38970396 - L1PA16 LINE L1 0 6166 5722 225 128 0 0 chr3 179066772 179066819 -38970339 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 319 311 0 0 chr3 179066822 179066925 -38970233 + MLT2A2 LTR ERVL 83 185 -268 1096 39 0 0 chr3 179067251 179067381 -38969777 - L1P LINE L1 -1897 4249 4120 * 8674 97 5 1 chr3 179067380 179068570 -38968588 + L1P LINE L1 12 1206 -4940 26 0 0 0 chr3 179069467 179069493 -38967665 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr3 179070275 179070303 -38966855 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 179070368 179070390 -38966768 + AT_rich Low_complexity Low_complexity 1 22 0 293 239 44 61 chr3 179070678 179070858 -38966300 + L1ME LINE L1 840 1016 -5054 183 42 0 0 chr3 179071857 179071881 -38965277 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2375 71 0 0 chr3 179073355 179073673 -38963485 - AluY SINE Alu 0 311 1 28 29 0 0 chr3 179074455 179074490 -38962668 + AT_rich Low_complexity Low_complexity 1 35 0 1047 227 60 57 chr3 179074542 179074975 -38962183 - L1ME1 LINE L1 0 6164 5725 538 263 35 12 chr3 179074983 179075154 -38962004 - L1ME1 LINE L1 -533 5633 5459 1466 239 125 51 chr3 179075164 179075926 -38961232 + L1M4 LINE L1 4568 5385 -761 578 243 70 23 chr3 179075924 179076183 -38960975 - L1MEc LINE L1 -5236 1160 890 * 6543 230 31 39 chr3 179076285 179078372 -38958786 - L1 LINE L1 -2000 5565 3496 27 29 0 0 chr3 179078570 179078604 -38958554 + AT_rich Low_complexity Low_complexity 1 34 0 263 381 54 0 chr3 179079713 179079860 -38957298 + MLT1I LTR MaLR 125 279 -130 468 248 86 48 chr3 179080966 179081176 -38955982 + MLT1J2 LTR MaLR 3 220 -230 315 342 97 25 chr3 179081388 179081584 -38955574 - MIR SINE MIR -47 215 6 967 296 133 20 chr3 179082049 179082656 -38954502 + L2 LINE L2 2111 2892 -421 530 266 47 18 chr3 179083237 179083406 -38953752 + L2 LINE L2 3138 3311 -2 217 269 19 0 chr3 179083887 179083939 -38953219 - L2 LINE L2 -10 3262 3210 32 0 0 0 chr3 179084722 179084754 -38952404 + AT_rich Low_complexity Low_complexity 1 32 0 1965 95 0 0 chr3 179084754 179085018 -38952140 - AluY SINE Alu -25 286 23 2494 96 32 0 chr3 179085275 179085619 -38951539 - THE1A LTR MaLR 0 355 1 23 0 0 0 chr3 179085866 179085889 -38951269 + AT_rich Low_complexity Low_complexity 1 23 0 287 232 13 84 chr3 179086008 179086163 -38950995 + L1M4 LINE L1 4536 4679 -1467 920 289 55 62 chr3 179086170 179086603 -38950555 - MLT1H LTR MaLR -2 547 118 2038 158 71 3 chr3 179086689 179087081 -38950077 - L1MA4 LINE L1 -103 6197 5779 1216 177 27 0 chr3 179087082 179087302 -38949856 + L1MA4 LINE L1 5557 5782 -518 2345 87 17 0 chr3 179087302 179087601 -38949557 + AluSg SINE Alu 1 304 -6 25 31 0 0 chr3 179087624 179087656 -38949502 + AT_rich Low_complexity Low_complexity 1 32 0 312 235 78 0 chr3 179087662 179087764 -38949394 + L1MC4 LINE L1 7766 7875 -167 17778 82 12 5 chr3 179088105 179090508 -38946650 + MER31-int LTR ERV1 2526 4944 -3455 1825 125 19 47 chr3 179090532 179090892 -38946266 + MER31-int LTR ERV1 698 1047 -7579 * 1951 117 9 22 chr3 179090881 179091291 -38945867 + MER31-int LTR ERV1 1275 3446 -3203 * 4713 165 104 47 chr3 179091285 179093212 -38943946 + MER31-int LTR ERV1 504 2438 0 220 27 54 0 chr3 179093399 179093436 -38943722 + (TA)n Simple_repeat Simple_repeat 2 40 0 26 30 0 0 chr3 179093960 179093993 -38943165 + AT_rich Low_complexity Low_complexity 1 33 0 1490 186 12 0 chr3 179094402 179094660 -38942498 + AluJb SINE Alu 1 261 -51 2521 220 31 71 chr3 179094761 179095653 -38941505 + MER31-int LTR ERV1 3985 6136 -195 741 272 75 15 chr3 179095928 179096193 -38940965 + MER39 LTR ERV1 361 641 -66 436 238 43 12 chr3 179096266 179096377 -38940781 + MLT1B LTR MaLR 279 498 -7 2345 77 3 3 chr3 179097505 179097816 -38939342 + AluY SINE Alu 1 311 0 645 293 63 25 chr3 179098840 179099079 -38938079 + MIR SINE MIR 14 261 -1 1807 150 3 3 chr3 179099156 179099456 -38937702 + AluSx SINE Alu 1 300 -12 198 298 57 95 chr3 179099557 179099715 -38937443 - MER5B DNA MER1_type 0 178 27 25 0 0 0 chr3 179099827 179099852 -38937306 + AT_rich Low_complexity Low_complexity 1 25 0 2376 80 0 0 chr3 179100101 179100403 -38936755 - AluY SINE Alu -9 302 1 7081 36 0 1 chr3 179100412 179101268 -38935890 - L1PA4 LINE L1 0 6155 5301 204 171 24 0 chr3 179101505 179101546 -38935612 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 4709 214 37 6 chr3 179102037 179104003 -38933155 - L1MA6 LINE L1 0 6300 4270 307 204 0 0 chr3 179104005 179104059 -38933099 + MSTD LTR MaLR 2 55 -341 717 237 45 0 chr3 179104165 179104321 -38932837 + MSTD LTR MaLR 234 396 0 3627 218 64 16 chr3 179104323 179105321 -38931837 - L1MA6 LINE L1 -1875 4271 3226 24 32 0 0 chr3 179106610 179106641 -38930517 + AT_rich Low_complexity Low_complexity 1 31 0 779 350 104 13 chr3 179107240 179107614 -38929544 - L2 LINE L2 -4 3309 2902 230 275 11 33 chr3 179107916 179108007 -38929151 - L1MC4 LINE L1 -1339 6703 6615 264 111 56 0 chr3 179108019 179108073 -38929085 - LTR66 LTR ERVL -160 450 394 2485 226 85 5 chr3 179109081 179109684 -38927474 + MER82 DNA MER2_type 1 651 -2 199 279 66 0 chr3 179109897 179109958 -38927200 + L2 LINE L2 3236 3300 -13 504 293 95 25 chr3 179111486 179111902 -38925256 - MLT1G3 LTR MaLR -27 568 34 261 183 0 50 chr3 179111909 179111969 -38925189 - MLT1G3 LTR MaLR -536 59 3 28 29 0 0 chr3 179112291 179112326 -38924832 + AT_rich Low_complexity Low_complexity 1 35 0 750 260 181 19 chr3 179114878 179115293 -38921865 - L1MC4 LINE L1 -1 8041 7560 35 78 0 0 chr3 179115293 179115370 -38921788 + AT_rich Low_complexity Low_complexity 1 77 0 225 0 0 0 chr3 179115484 179115509 -38921649 + (TCTCCC)n Simple_repeat Simple_repeat 2 26 0 9825 68 18 45 chr3 179115543 179116964 -38920194 + SVA Other Other 1 1383 -3 623 146 80 20 chr3 179116965 179117116 -38920042 - Charlie7 DNA MER1_type -179 2433 2274 414 224 0 71 chr3 179117336 179117434 -38919724 - FRAM SINE Alu -10 156 66 7121 37 1 0 chr3 179117435 179118306 -38918852 - L1P LINE L1 -988 5158 4287 2021 234 85 11 chr3 179118406 179118483 -38918675 + L1MA10 LINE L1 4262 4332 -1814 4927 45 5 0 chr3 179118483 179119088 -38918070 + L1PA4 LINE L1 5546 6153 -2 2021 234 85 11 chr3 179119088 179119230 -38917928 + L1MA10 LINE L1 4332 4462 -1684 2061 210 34 2 chr3 179119230 179119677 -38917481 - LOR1b LTR ERV1 0 461 1 2021 234 85 11 chr3 179119677 179120066 -38917092 + L1MA10 LINE L1 4462 4916 -1230 1840 208 42 69 chr3 179120109 179120663 -38916495 + L1MA10 LINE L1 5789 6327 -7 36 53 0 0 chr3 179120909 179120966 -38916192 + AT_rich Low_complexity Low_complexity 1 57 0 1820 155 16 9 chr3 179121114 179121437 -38915721 - L1MA6 LINE L1 0 6300 5976 492 313 60 6 chr3 179121579 179121745 -38915413 - MIR SINE MIR -73 189 15 239 278 0 14 chr3 179123188 179123260 -38913898 + (TG)n Simple_repeat Simple_repeat 2 72 0 239 364 179 5 chr3 179124145 179124340 -38912818 - L2 LINE L2 -649 2665 2437 351 276 29 19 chr3 179125633 179125738 -38911420 - L2 LINE L2 -22 3291 3186 314 18 73 0 chr3 179125991 179126046 -38911112 + (TA)n Simple_repeat Simple_repeat 2 60 0 257 386 63 0 chr3 179126392 179126550 -38910608 + L2 LINE L2 2703 2870 -444 227 237 290 0 chr3 179127855 179127948 -38909210 + L1ME1 LINE L1 6023 6142 -24 46 62 0 0 chr3 179128111 179128192 -38908966 + AT_rich Low_complexity Low_complexity 1 81 0 376 296 204 0 chr3 179128550 179128702 -38908456 + MER5A DNA MER1_type 7 189 0 427 292 93 81 chr3 179128844 179129262 -38907896 - L2 LINE L2 -2 3311 2889 474 307 58 5 chr3 179129299 179129488 -38907670 + LTR16A LTR ERVL 196 394 -56 26 0 0 0 chr3 179131725 179131751 -38905407 + AT_rich Low_complexity Low_complexity 1 26 0 4065 81 16 2 chr3 179132174 179132729 -38904429 + L1PA7 LINE L1 5591 6153 -1 259 264 146 36 chr3 179132904 179133014 -38904144 - L2 LINE L2 0 3313 3192 21 57 0 0 chr3 179133518 179133553 -38903605 + AT_rich Low_complexity Low_complexity 1 35 0 201 39 0 0 chr3 179134968 179134994 -38902164 + (CA)n Simple_repeat Simple_repeat 2 27 0 22 0 0 0 chr3 179136390 179136412 -38900746 + AT_rich Low_complexity Low_complexity 1 22 0 742 243 88 14 chr3 179136565 179136733 -38900425 + L1ME LINE L1 5087 5241 -925 576 0 0 0 chr3 179136733 179136797 -38900361 + (TA)n Simple_repeat Simple_repeat 1 64 0 742 243 88 14 chr3 179136797 179137061 -38900097 + L1ME LINE L1 5241 5547 -619 893 258 59 3 chr3 179137250 179137418 -38899740 + L1ME LINE L1 5087 5244 -922 576 0 0 0 chr3 179137418 179137482 -38899676 + (TA)n Simple_repeat Simple_repeat 1 64 0 893 258 59 3 chr3 179137482 179137745 -38899413 + L1ME LINE L1 5244 5546 -620 264 185 0 0 chr3 179137745 179137799 -38899359 - MLT1D LTR MaLR 0 505 452 2678 214 22 8 chr3 179137799 179138388 -38898770 - L1MC3 LINE L1 -110 7675 7079 1140 282 84 28 chr3 179138401 179139235 -38897923 - L1ME LINE L1 -4933 1045 302 1140 197 7 83 chr3 179139751 179140051 -38897107 + AluJb SINE Alu 18 294 -18 21 57 0 0 chr3 179140347 179140382 -38896776 + AT_rich Low_complexity Low_complexity 1 35 0 32 26 0 0 chr3 179140983 179141022 -38896136 + AT_rich Low_complexity Low_complexity 1 39 0 339 273 100 7 chr3 179141288 179141438 -38895720 + MER104 DNA Tc2 4 167 -13 988 239 64 72 chr3 179141931 179142403 -38894755 - LTR45B LTR ERV1 0 489 22 575 135 42 0 chr3 179142550 179142646 -38894512 + MST-int LTR MaLR 201 300 -1351 393 39 0 0 chr3 179142808 179142859 -38894299 + (TG)n Simple_repeat Simple_repeat 2 52 0 2089 193 16 57 chr3 179142859 179143300 -38893858 + MSTB LTR MaLR 4 426 0 1378 158 0 0 chr3 179143300 179143522 -38893636 + MSTB-int LTR MaLR 1 222 -1429 * 4489 191 43 16 chr3 179143516 179144451 -38892707 + MSTB-int LTR MaLR 687 1646 -5 2486 161 16 9 chr3 179144456 179144879 -38892279 + MSTB LTR MaLR 1 426 0 296 211 13 0 chr3 179144882 179144958 -38892200 + (TG)n Simple_repeat Simple_repeat 2 78 0 335 261 70 70 chr3 179144968 179145125 -38892033 + HAL1 LINE L1 114 270 -2237 434 286 21 29 chr3 179145191 179145331 -38891827 + HAL1 LINE L1 494 632 -1875 1298 299 45 34 chr3 179145608 179146249 -38890909 + HAL1 LINE L1 1171 1818 -689 2037 188 24 31 chr3 179146253 179146674 -38890484 - MSTB LTR MaLR 0 426 9 257 225 35 136 chr3 179146763 179146932 -38890226 + HAL1 LINE L1 1973 2124 -383 436 282 54 78 chr3 179147034 179147420 -38889738 + HAL1 LINE L1 2127 2503 -4 306 0 0 0 chr3 179147422 179147456 -38889702 + (CA)n Simple_repeat Simple_repeat 1 34 0 222 174 0 0 chr3 179147550 179147596 -38889562 + CT-rich Low_complexity Low_complexity 3 48 0 206 356 0 0 chr3 179149647 179149734 -38887424 - MIR3 SINE MIR -2 206 120 440 292 71 38 chr3 179149760 179150000 -38887158 + MER46C DNA MER2_type 2 249 -89 30 0 0 0 chr3 179150581 179150611 -38886547 + AT_rich Low_complexity Low_complexity 1 30 0 986 249 26 0 chr3 179151123 179151356 -38885802 + MER8 DNA MER2_type 1 239 0 359 326 31 27 chr3 179151463 179151768 -38885390 + MLT1G1 LTR MaLR 5 354 -241 306 125 0 0 chr3 179152039 179152087 -38885071 + (TAGTG)n Simple_repeat Simple_repeat 3 50 0 576 281 46 17 chr3 179152253 179152493 -38884665 + L1ME3 LINE L1 5915 6155 -15 183 317 0 92 chr3 179152715 179152857 -38884301 + L2 LINE L2 1314 1442 -1872 359 287 0 17 chr3 179153207 179153322 -38883836 + L1ME LINE L1 3743 3855 -2291 1249 236 19 16 chr3 179153322 179153632 -38883526 + MLT1A1 LTR MaLR 1 311 -54 525 205 36 18 chr3 179153644 179153756 -38883402 - FLAM_A SINE Alu -18 115 2 360 133 17 0 chr3 179153812 179153872 -38883286 + MLT1A1-int LTR MaLR 47 107 -1264 326 276 39 31 chr3 179153929 179154056 -38883102 + MLT1A1-int LTR MaLR 120 247 -1488 288 252 162 36 chr3 179154050 179154161 -38882997 - MLT-int LTR MaLR -292 1443 1319 * 27 0 0 0 chr3 179154950 179154977 -38882181 + AT_rich Low_complexity Low_complexity 1 27 0 1643 276 55 24 chr3 179155275 179156258 -38880900 + L1ME LINE L1 4611 5625 -541 230 167 148 0 chr3 179156285 179156339 -38880819 + L1P5 LINE L1 5721 5782 -369 399 269 143 21 chr3 179156349 179156587 -38880571 + L1ME LINE L1 5476 5742 -420 1294 225 63 18 chr3 179157256 179157589 -38879569 + MLT1A1-int LTR MaLR 1310 1657 -78 2243 281 78 47 chr3 179157590 179159313 -38877845 + L1M4 LINE L1 88 1858 -4788 987 174 15 15 chr3 179159324 179159520 -38877638 + L1PBa LINE L1 3 198 -6665 3031 129 27 14 chr3 179159522 179160041 -38877117 + L1PBa LINE L1 634 1159 -5704 5762 106 14 5 chr3 179160055 179160936 -38876222 + L1PBa LINE L1 1318 2206 -4657 2623 101 3 3 chr3 179160950 179160972 -38876186 + L1PB1 LINE L1 5767 5788 -363 354 23 0 0 chr3 179160972 179161015 -38876143 + (CA)n Simple_repeat Simple_repeat 2 44 0 2623 101 3 3 chr3 179161015 179161377 -38875781 + L1PB1 LINE L1 5787 6151 0 578 307 27 4 chr3 179161410 179161635 -38875523 + L1M4 LINE L1 1859 2088 -4558 21 36 0 0 chr3 179161700 179161728 -38875430 + AT_rich Low_complexity Low_complexity 1 28 0 296 246 35 18 chr3 179161984 179162098 -38875060 + L1MB7 LINE L1 6068 6183 -1 256 306 149 0 chr3 179163708 179163829 -38873329 + MIR SINE MIR 11 149 -113 2358 90 0 0 chr3 179163993 179164303 -38872855 + AluSx SINE Alu 1 310 -2 1242 252 92 31 chr3 179165083 179165559 -38871599 - MLT1D LTR MaLR 0 505 1 2252 66 7 10 chr3 179166110 179166413 -38870745 - AluY SINE Alu -7 304 3 407 331 99 57 chr3 179167482 179167789 -38869369 - L2 LINE L2 -72 3241 2948 1865 108 25 11 chr3 179167789 179168106 -38869052 + AluSc SINE Alu 1 321 0 407 331 99 57 chr3 179168106 179168418 -38868740 - L2 LINE L2 -365 2948 2581 288 300 92 31 chr3 179168591 179168721 -38868437 - MIR SINE MIR -74 188 51 180 0 0 0 chr3 179168785 179168805 -38868353 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 27 87 0 0 chr3 179170163 179170232 -38866926 + AT_rich Low_complexity Low_complexity 1 69 0 1308 155 13 13 chr3 179170386 179170625 -38866533 - L1PB2 LINE L1 -3 6148 5910 207 69 0 0 chr3 179172002 179172031 -38865127 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 46 0 0 0 chr3 179173230 179173276 -38863882 + AT_rich Low_complexity Low_complexity 1 46 0 21 57 0 0 chr3 179173450 179173485 -38863673 + AT_rich Low_complexity Low_complexity 1 35 0 272 291 107 0 chr3 179173491 179173594 -38863564 - L2 LINE L2 0 3313 3200 26 50 0 0 chr3 179174521 179174561 -38862597 + AT_rich Low_complexity Low_complexity 1 40 0 582 380 47 31 chr3 179174798 179175506 -38861652 - L2 LINE L2 -2 3311 2597 42545 36 21 1 chr3 179175729 179181762 -38855396 + L1PA3 LINE L1 1 6155 0 24 53 0 0 chr3 179181817 179181855 -38855303 + AT_rich Low_complexity Low_complexity 1 38 0 197 358 63 0 chr3 179183266 179183361 -38853797 + MIR SINE MIR 49 149 -113 21 36 0 0 chr3 179183444 179183472 -38853686 + AT_rich Low_complexity Low_complexity 1 28 0 4803 215 53 13 chr3 179183995 179184619 -38852539 + L1MA4 LINE L1 4217 4815 -1485 1823 141 37 55 chr3 179184619 179184934 -38852224 + THE1C LTR MaLR 1 309 -66 2052 125 34 0 chr3 179184934 179185231 -38851927 + AluSx SINE Alu 2 308 -4 1823 141 37 55 chr3 179185231 179185297 -38851861 + THE1C LTR MaLR 309 375 0 4803 215 53 13 chr3 179185297 179185740 -38851418 + L1MA4 LINE L1 4815 5239 -1061 180 0 0 0 chr3 179185740 179185760 -38851398 + (CAT)n Simple_repeat Simple_repeat 3 22 0 4803 215 53 13 chr3 179185760 179186704 -38850454 + L1MA4 LINE L1 5239 6300 0 1615 203 118 20 chr3 179187364 179187772 -38849386 - MLT1C LTR MaLR -17 450 3 249 57 0 0 chr3 179188316 179188351 -38848807 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 823 188 18 6 chr3 179189184 179189349 -38847809 - MER5A DNA MER1_type -18 171 5 22 0 0 0 chr3 179190388 179190410 -38846748 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 179191326 179191348 -38845810 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 179192101 179192123 -38845035 + AT_rich Low_complexity Low_complexity 1 22 0 1212 163 9 56 chr3 179193376 179193609 -38843549 - MLT1D LTR MaLR -2 503 282 225 241 19 0 chr3 179194009 179194063 -38843095 + (TA)n Simple_repeat Simple_repeat 2 56 0 1030 63 42 0 chr3 179194363 179194506 -38842652 + L1MA1 LINE L1 6154 6302 0 25 0 0 0 chr3 179194506 179194531 -38842627 + AT_rich Low_complexity Low_complexity 1 25 0 36 70 0 0 chr3 179194786 179194857 -38842301 + AT_rich Low_complexity Low_complexity 1 71 0 1173 294 143 34 chr3 179195113 179195854 -38841304 - L2 LINE L2 -1331 1983 1162 1721 139 4 15 chr3 179196249 179196516 -38840642 - AluSx SINE Alu -40 272 9 22 80 0 0 chr3 179197222 179197272 -38839886 + AT_rich Low_complexity Low_complexity 1 50 0 297 67 0 0 chr3 179197272 179197317 -38839841 - MSTA LTR MaLR -19 409 365 348 93 0 19 chr3 179197346 179197400 -38839758 + THE1C LTR MaLR 1 53 -322 1738 118 112 58 chr3 179197405 179197752 -38839406 - MLT2A2 LTR ERVL -8 445 80 1408 160 0 9 chr3 179197752 179197983 -38839175 - HERVL LTR ERVL -4920 734 506 2034 131 48 31 chr3 179197983 179198341 -38838817 + THE1B LTR MaLR 1 364 0 11132 103 4 4 chr3 179198341 179199920 -38837238 + THE1B-int LTR MaLR 1 1580 0 1913 138 50 44 chr3 179199920 179200282 -38836876 + THE1B LTR MaLR 1 364 0 976 98 0 0 chr3 179200282 179200414 -38836744 - MLT2A2 LTR ERVL -321 132 1 1453 172 34 34 chr3 179200415 179200741 -38836417 + THE1C LTR MaLR 50 375 0 * 1510 180 121 19 chr3 179200741 179201063 -38836095 - MSTA LTR MaLR -73 355 1 23 33 0 0 chr3 179201990 179202020 -38835138 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 179202031 179202052 -38835106 + AT_rich Low_complexity Low_complexity 1 21 0 210 71 0 0 chr3 179202639 179202667 -38834491 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 1181 135 0 0 chr3 179203674 179203837 -38833321 + AluSx SINE Alu 4 166 -146 929 228 62 0 chr3 179203985 179204209 -38832949 - LTR65 LTR ERV1 -6 663 426 747 168 0 0 chr3 179204217 179204348 -38832810 + AluSx SINE Alu 172 302 -10 229 209 0 0 chr3 179204401 179204444 -38832714 + (TATG)n Simple_repeat Simple_repeat 2 44 0 28 29 0 0 chr3 179204472 179204507 -38832651 + AT_rich Low_complexity Low_complexity 1 35 0 240 267 33 0 chr3 179204960 179205050 -38832108 + (TA)n Simple_repeat Simple_repeat 2 94 0 * 275 269 0 0 chr3 179204984 179205051 -38832107 + (TATG)n Simple_repeat Simple_repeat 1 67 0 2460 241 35 20 chr3 179205086 179205738 -38831420 + LTR65 LTR ERV1 1 662 -7 337 265 188 38 chr3 179205867 179206320 -38830838 + L1M4 LINE L1 3826 4346 -1800 2272 90 0 3 chr3 179206371 179206671 -38830487 - AluSq SINE Alu -14 299 1 467 320 57 15 chr3 179206760 179207094 -38830064 + L1M4 LINE L1 4604 4951 -1195 180 0 0 0 chr3 179208208 179208228 -38828930 + (CAAAAA)n Simple_repeat Simple_repeat 4 23 0 422 109 0 0 chr3 179208566 179208630 -38828528 + MER2 DNA MER2_type 126 189 -156 231 320 93 0 chr3 179208678 179208753 -38828405 + MER2 DNA MER2_type 264 345 0 280 241 0 0 chr3 179209170 179209228 -38827930 - LTR67 LTR ERVL -8 549 492 1665 211 50 0 chr3 179209331 179209668 -38827490 - MSTD LTR MaLR -41 355 2 409 206 11 43 chr3 179210348 179210440 -38826718 + FLAM_A SINE Alu 22 110 -23 306 0 0 0 chr3 179210447 179210481 -38826677 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr3 179210955 179210979 -38826179 + AT_rich Low_complexity Low_complexity 1 24 0 364 299 71 24 chr3 179211040 179211167 -38825991 + Zaphod DNA AcHobo 13 145 -3886 444 274 118 21 chr3 179211221 179211407 -38825751 + Zaphod DNA AcHobo 239 442 -3589 256 214 71 43 chr3 179211571 179211641 -38825517 - MER2 DNA MER2_type 0 345 274 798 229 141 29 chr3 179211656 179212145 -38825013 + Zaphod DNA AcHobo 443 986 -3045 296 254 0 0 chr3 179212244 179212315 -38824843 + MER67C LTR ERV1 1 71 -443 1151 237 62 46 chr3 179212367 179212839 -38824319 + MER67C LTR ERV1 67 514 0 322 219 135 31 chr3 179212839 179213028 -38824130 + Zaphod DNA AcHobo 3777 3985 -46 288 222 25 0 chr3 179213130 179213211 -38823947 - L1MC4 LINE L1 -1346 6696 6614 276 221 47 0 chr3 179213137 179213223 -38823935 + L1MC4 LINE L1 6614 6703 -1339 * 269 209 47 0 chr3 179213217 179213303 -38823855 - L1MC4 LINE L1 -1339 6703 6614 * 245 271 0 0 chr3 179213316 179213375 -38823783 + (CATATA)n Simple_repeat Simple_repeat 5 63 0 316 291 0 12 chr3 179213472 179213558 -38823600 + L1MC4 LINE L1 6614 6698 -1344 588 186 26 9 chr3 179214145 179214258 -38822900 + FLAM_C SINE Alu 3 117 -16 258 307 63 39 chr3 179215430 179215557 -38821601 + MIR SINE MIR 87 216 -46 2109 91 14 0 chr3 179216591 179216878 -38820280 + AluSp SINE Alu 1 291 -22 22 0 0 0 chr3 179217495 179217517 -38819641 + AT_rich Low_complexity Low_complexity 1 22 0 918 233 7 7 chr3 179217799 179218069 -38819089 - L1M4 LINE L1 -3174 2972 2703 527 235 124 33 chr3 179218077 179218391 -38818767 - L1MCa LINE L1 -2805 3759 3475 7427 101 2 0 chr3 179218391 179220235 -38816923 + L1PA7 LINE L1 4306 6148 -6 527 235 124 33 chr3 179220235 179220412 -38816746 - L1MCa LINE L1 -3089 3475 2266 2540 204 19 5 chr3 179220418 179220873 -38816285 + MLT2B1 LTR ERVL 1 448 -5 186 43 0 0 chr3 179220873 179220896 -38816262 + (TC)n Simple_repeat Simple_repeat 2 24 0 423 0 0 0 chr3 179220900 179220947 -38816211 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 2540 204 19 5 chr3 179220947 179220991 -38816167 + MLT2B1 LTR ERVL 450 453 0 1710 246 187 39 chr3 179220991 179222477 -38814681 - L1MCa LINE L1 -4303 2261 556 864 279 87 71 chr3 179222538 179223103 -38814055 - L1MCa LINE L1 -5472 688 111 23 0 0 0 chr3 179223508 179223531 -38813627 + AT_rich Low_complexity Low_complexity 1 23 0 24 53 0 0 chr3 179223715 179223753 -38813405 + AT_rich Low_complexity Low_complexity 1 38 0 2080 123 0 3 chr3 179223797 179224125 -38813033 + AluSc SINE Alu 6 332 0 320 156 11 156 chr3 179224569 179224659 -38812499 - LTR8A LTR ERV1 0 727 651 541 243 55 112 chr3 179224808 179225174 -38811984 + LTR37A LTR ERV1 78 422 -4 38 39 0 0 chr3 179225689 179225741 -38811417 + AT_rich Low_complexity Low_complexity 1 52 0 21 57 0 0 chr3 179225870 179225905 -38811253 + AT_rich Low_complexity Low_complexity 1 35 0 328 229 37 46 chr3 179226093 179226176 -38810982 + L1ME LINE L1 5401 5484 -680 360 0 0 0 chr3 179226176 179226216 -38810942 + (TG)n Simple_repeat Simple_repeat 2 41 0 328 229 37 46 chr3 179226216 179226241 -38810917 + L1ME LINE L1 5484 5508 -656 1883 203 175 143 chr3 179226245 179226757 -38810401 + L1MD3 LINE L1 6702 7197 -798 523 288 0 0 chr3 179226757 179226882 -38810276 + MLT1F1 LTR MaLR 1 125 -442 1883 203 175 143 chr3 179226882 179227167 -38809991 + L1MD3 LINE L1 7197 7472 -523 930 35 0 0 chr3 179227167 179227280 -38809878 + L1PA3 LINE L1 6042 6154 -1 1883 203 175 143 chr3 179227280 179227604 -38809554 + L1MD3 LINE L1 7472 7987 -8 396 0 0 0 chr3 179228593 179228637 -38808521 + (TA)n Simple_repeat Simple_repeat 2 45 0 392 360 118 19 chr3 179229046 179229477 -38807681 - L2 LINE L2 0 3313 2840 200 212 30 15 chr3 179229480 179229546 -38807612 + (TTAA)n Simple_repeat Simple_repeat 3 69 0 296 356 142 22 chr3 179229692 179230375 -38806783 - L2 LINE L2 -202 3070 2305 594 285 146 21 chr3 179230382 179230670 -38806488 + L2 LINE L2 2990 3313 0 467 286 10 108 chr3 179233605 179233677 -38803481 + MER5A DNA MER1_type 4 81 -108 2294 78 10 0 chr3 179233677 179233984 -38803174 + AluY SINE Alu 1 310 -1 467 286 10 108 chr3 179233984 179234114 -38803044 + MER5A DNA MER1_type 81 186 -3 238 232 20 10 chr3 179234775 179234874 -38802284 + (TA)n Simple_repeat Simple_repeat 2 101 0 30 27 0 0 chr3 179234958 179234995 -38802163 + AT_rich Low_complexity Low_complexity 1 37 0 242 294 68 73 chr3 179235287 179235464 -38801694 + MLT1J LTR MaLR 229 404 -107 1923 216 37 18 chr3 179235505 179235940 -38801218 - L1MB1 LINE L1 -294 5895 5453 1086 154 8 45 chr3 179235942 179236189 -38800969 + L1MA10 LINE L1 6086 6323 -11 632 195 0 0 chr3 179237486 179237641 -38799517 - FLAM_A SINE Alu 0 162 8 288 305 110 17 chr3 179237862 179237980 -38799178 + L2 LINE L2 3154 3282 -31 23 78 0 0 chr3 179238318 179238369 -38798789 + AT_rich Low_complexity Low_complexity 1 51 0 216 171 0 0 chr3 179238734 179238769 -38798389 + A-rich Low_complexity Low_complexity 2 36 0 327 313 130 9 chr3 179239207 179239437 -38797721 - HAL1 LINE L1 -4 2503 2246 274 105 40 26 chr3 179239478 179239554 -38797604 + (TG)n Simple_repeat Simple_repeat 2 78 0 189 74 0 0 chr3 179239607 179239634 -38797524 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 481 336 20 16 chr3 179239979 179240232 -38796926 - HAL1 LINE L1 -727 1780 1527 249 83 0 0 chr3 179240335 179240371 -38796787 + (TTCC)n Simple_repeat Simple_repeat 1 36 0 369 62 0 0 chr3 179241069 179241117 -38796041 + (TG)n Simple_repeat Simple_repeat 1 48 0 24 32 0 0 chr3 179241859 179241890 -38795268 + AT_rich Low_complexity Low_complexity 1 31 0 2713 75 139 7 chr3 179242480 179242891 -38794267 + PABL_B LTR ERV1 1 465 -202 2017 118 0 51 chr3 179293194 179293508 -38743650 + AluSg SINE Alu 1 298 -12 1470 236 83 39 chr3 179294016 179294423 -38742735 - MLT1D LTR MaLR -80 425 1 202 336 58 48 chr3 179294885 179294989 -38742169 - MIR3 SINE MIR -29 179 75 22 21 0 62 chr3 179295047 179295095 -38742063 + AT_rich Low_complexity Low_complexity 1 45 0 263 325 25 70 chr3 179295359 179295469 -38741689 + MIR SINE MIR 47 149 -113 2209 114 3 0 chr3 179295469 179295776 -38741382 - AluSg SINE Alu -2 308 1 263 325 25 70 chr3 179295776 179295822 -38741336 + MIR SINE MIR 149 196 -66 22 56 0 0 chr3 179295837 179295873 -38741285 + AT_rich Low_complexity Low_complexity 1 36 0 21 82 0 0 chr3 179296084 179296133 -38741025 + AT_rich Low_complexity Low_complexity 1 49 0 922 152 12 195 chr3 179296225 179296548 -38740610 + L1MA7 LINE L1 5569 5832 -468 973 169 0 6 chr3 179296561 179296738 -38740420 - L1MA6 LINE L1 -238 6062 5887 1118 153 4 77 chr3 179296783 179297044 -38740114 + L1MB8 LINE L1 5928 6169 -9 1003 214 23 39 chr3 179297056 179297313 -38739845 + L1MA7 LINE L1 5818 6070 -221 3667 139 11 63 chr3 179297514 179298239 -38738919 - L1PA15 LINE L1 -15 6150 5464 193 373 118 31 chr3 179298790 179298951 -38738207 + L2 LINE L2 3094 3268 -4 25 0 0 0 chr3 179299484 179299509 -38737649 + AT_rich Low_complexity Low_complexity 1 25 0 236 434 42 6 chr3 179299628 179299794 -38737364 + L2 LINE L2 3101 3272 0 35 71 0 0 chr3 179299996 179300066 -38737092 + AT_rich Low_complexity Low_complexity 1 70 0 646 131 180 0 chr3 179300357 179300479 -38736679 + L1MA6 LINE L1 6027 6170 -130 3326 140 51 9 chr3 179300579 179301143 -38736015 - MER39B LTR ERV1 -65 588 1 22 0 0 0 chr3 179302435 179302457 -38734701 + AT_rich Low_complexity Low_complexity 1 22 0 518 170 26 59 chr3 179302650 179302803 -38734355 - L1MA7 LINE L1 -5 6286 6139 29 84 0 0 chr3 179302888 179302959 -38734199 + AT_rich Low_complexity Low_complexity 1 71 0 390 192 0 0 chr3 179303039 179303117 -38734041 - L1MA8 LINE L1 -153 6138 6061 38 22 0 0 chr3 179305188 179305233 -38731925 + AT_rich Low_complexity Low_complexity 1 45 0 250 341 0 0 chr3 179305459 179305544 -38731614 - MIR SINE MIR -78 184 100 429 278 23 8 chr3 179305592 179305725 -38731433 + MIR SINE MIR 72 206 -56 1537 196 11 3 chr3 179306209 179306494 -38730664 + AluJo SINE Alu 1 287 -25 190 416 22 17 chr3 179306977 179307155 -38730003 - L2 LINE L2 -1017 2297 2119 488 240 70 12 chr3 179307754 179307925 -38729233 - L1ME3A LINE L1 -111 6059 5879 998 299 20 0 chr3 179307925 179308269 -38728889 - L1ME1 LINE L1 -26 6140 5790 351 0 0 0 chr3 179308303 179308342 -38728816 + (TTA)n Simple_repeat Simple_repeat 3 41 0 2446 77 0 0 chr3 179308342 179308667 -38728491 - L1PA7 LINE L1 -18 6136 5812 3875 81 23 0 chr3 179308667 179309312 -38727846 + L1PA7 LINE L1 5133 5787 -385 732 259 22 22 chr3 179309317 179309549 -38727609 - L1ME1 LINE L1 -395 5771 5540 234 0 0 0 chr3 179309561 179309587 -38727571 + (T)n Simple_repeat Simple_repeat 1 26 0 957 96 0 0 chr3 179309595 179309720 -38727438 - AluSq SINE Alu -83 230 106 5523 165 52 7 chr3 179309746 179311019 -38726139 - L1MA3 LINE L1 0 6305 4974 2178 122 3 26 chr3 179311019 179311371 -38725787 + L1PA13 LINE L1 5820 6163 0 503 276 39 53 chr3 179311371 179311730 -38725428 + L1M4 LINE L1 2925 3278 -2868 1475 230 127 73 chr3 179311730 179312418 -38724740 - MER50 LTR ERV1 0 734 10 613 265 12 68 chr3 179312424 179312625 -38724533 + L1M4 LINE L1 3275 3453 -2693 2505 112 8 8 chr3 179312625 179312999 -38724159 - THE1C LTR MaLR -1 374 1 613 265 12 68 chr3 179312999 179313121 -38724037 + L1M4 LINE L1 3453 3580 -2566 1801 216 49 0 chr3 179313124 179313512 -38723646 + MSTC LTR MaLR 1 407 -21 1891 237 28 27 chr3 179313512 179314478 -38722680 + L1M4 LINE L1 3790 4862 -1284 5237 185 16 22 chr3 179314480 179316501 -38720657 - L1MA6 LINE L1 0 6300 4293 801 246 53 22 chr3 179316503 179316731 -38720427 + MLT1A1 LTR MaLR 131 365 0 35 41 0 0 chr3 179316876 179316925 -38720233 + AT_rich Low_complexity Low_complexity 1 49 0 186 311 40 27 chr3 179317467 179317541 -38719617 - MIR3 SINE MIR -48 160 86 21 0 0 0 chr3 179318958 179318979 -38718179 + AT_rich Low_complexity Low_complexity 1 21 0 280 345 73 34 chr3 179319520 179319697 -38717461 - MIR3 SINE MIR -4 204 21 237 111 0 0 chr3 179320346 179320382 -38716776 - AluJo SINE Alu -14 288 253 1317 210 28 0 chr3 179320441 179320693 -38716465 - AluJo SINE Alu -53 259 1 1615 191 7 17 chr3 179321329 179321627 -38715531 - AluJo SINE Alu -9 303 9 349 305 141 42 chr3 179321688 179321901 -38715257 - MIR SINE MIR -10 252 19 21 36 0 0 chr3 179322700 179322728 -38714430 + AT_rich Low_complexity Low_complexity 1 28 0 216 266 13 76 chr3 179323565 179323644 -38713514 - MER5A DNA MER1_type -79 110 37 2886 185 93 9 chr3 179323918 179324501 -38712657 + MER39 LTR ERV1 76 707 0 205 391 54 0 chr3 179324555 179324647 -38712511 - L2 LINE L2 -17 3255 3159 2067 98 11 3 chr3 179325171 179325458 -38711700 + AluSc SINE Alu 1 289 -20 853 57 0 0 chr3 179326726 179326865 -38710293 + L1PA3 LINE L1 6041 6179 0 1382 117 34 0 chr3 179326873 179327079 -38710079 + AluSg/x SINE Alu 68 280 -32 817 36 9 9 chr3 179327080 179327190 -38709968 + (GAAA)n Simple_repeat Simple_repeat 2 111 0 443 87 14 0 chr3 179327190 179327259 -38709899 + (GAGAA)n Simple_repeat Simple_repeat 1 70 0 2620 157 50 4 chr3 179327474 179327991 -38709167 + L1MC1 LINE L1 5793 6333 0 1315 302 84 19 chr3 179328211 179328310 -38708848 + LTR40a LTR ERVL 1 92 -427 2734 35 0 9 chr3 179328310 179328652 -38708506 + L1PA4 LINE L1 5815 6153 -2 1315 302 84 19 chr3 179328652 179329039 -38708119 + LTR40a LTR ERVL 92 519 0 21 0 0 0 chr3 179330235 179330256 -38706902 + AT_rich Low_complexity Low_complexity 1 21 0 199 305 24 37 chr3 179331642 179331724 -38705434 + MIR SINE MIR 156 236 -26 294 369 96 7 chr3 179333293 179333594 -38703564 + L2 LINE L2 2898 3225 -88 23 68 0 0 chr3 179334516 179334560 -38702598 + AT_rich Low_complexity Low_complexity 1 44 0 28 71 0 0 chr3 179335620 179335676 -38701482 + AT_rich Low_complexity Low_complexity 1 56 0 29 28 0 0 chr3 179335730 179335766 -38701392 + AT_rich Low_complexity Low_complexity 1 36 0 412 268 10 0 chr3 179338360 179338457 -38698701 + MER5B DNA MER1_type 1 98 -80 1111 150 84 0 chr3 179338469 179338696 -38698462 + L1MA2 LINE L1 3360 3605 -3960 * 5920 142 21 20 chr3 179338680 179339530 -38697628 + L1MA2 LINE L1 6602 7453 -270 1459 156 49 87 chr3 179339530 179339920 -38697238 + THE1C LTR MaLR 1 375 0 5920 142 21 20 chr3 179339920 179340192 -38696966 + L1MA2 LINE L1 7453 7723 0 533 192 66 82 chr3 179340261 179340443 -38696715 - MER3 DNA MER1_type 0 209 31 777 250 0 0 chr3 179340446 179340606 -38696552 - FRAM SINE Alu -6 160 1 221 362 0 0 chr3 179340658 179340727 -38696431 + MER5A DNA MER1_type 4 72 -117 2002 133 3 10 chr3 179340794 179341103 -38696055 - AluSx SINE Alu -3 309 3 279 211 18 0 chr3 179341197 179341254 -38695904 - L2 LINE L2 -4 3309 3252 21 0 0 0 chr3 179341666 179341687 -38695471 + AT_rich Low_complexity Low_complexity 1 21 0 261 186 35 12 chr3 179342477 179342563 -38694595 + (TA)n Simple_repeat Simple_repeat 1 88 0 23 0 0 0 chr3 179343536 179343559 -38693599 + AT_rich Low_complexity Low_complexity 1 23 0 2276 97 0 3 chr3 179344857 179345156 -38692002 - AluSq SINE Alu -15 298 1 1876 244 30 121 chr3 179345762 179346789 -38690369 - L1M4 LINE L1 -2941 3205 2272 1474 234 0 0 chr3 179346789 179347109 -38690049 + L1MB1 LINE L1 5846 6165 -3 2259 90 0 7 chr3 179347125 179347425 -38689733 - AluY SINE Alu -13 298 1 26 64 0 0 chr3 179348036 179348083 -38689075 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr3 179348370 179348391 -38688767 + AT_rich Low_complexity Low_complexity 1 21 0 1075 192 0 0 chr3 179348667 179348849 -38688309 - AluJo SINE Alu -130 182 1 623 281 31 0 chr3 179348854 179349050 -38688108 - L1MD3 LINE L1 -76 7919 7718 2273 68 0 3 chr3 179349060 179349371 -38687787 - AluY SINE Alu 0 311 1 21 36 0 0 chr3 179349467 179349495 -38687663 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr3 179352541 179352567 -38684591 + AT_rich Low_complexity Low_complexity 1 26 0 212 267 13 0 chr3 179353087 179353162 -38683996 + (TA)n Simple_repeat Simple_repeat 1 76 0 1502 195 16 22 chr3 179353302 179353671 -38683487 - L1 LINE L1 -1424 4722 4356 22 35 0 0 chr3 179354062 179354091 -38683067 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 179355114 179355135 -38682023 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr3 179355482 179355511 -38681647 + AT_rich Low_complexity Low_complexity 1 29 0 26 101 0 0 chr3 179356151 179356240 -38680918 + AT_rich Low_complexity Low_complexity 1 89 0 318 274 119 32 chr3 179357121 179357398 -38679760 - L1ME LINE L1 -293 5828 5528 24 0 0 0 chr3 179357921 179357945 -38679213 + AT_rich Low_complexity Low_complexity 1 24 0 324 0 0 0 chr3 179358015 179358051 -38679107 + (CA)n Simple_repeat Simple_repeat 1 36 0 249 33 0 0 chr3 179358073 179358103 -38679055 + (CA)n Simple_repeat Simple_repeat 1 30 0 21 36 0 0 chr3 179358364 179358392 -38678766 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 179358811 179358833 -38678325 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr3 179358909 179358940 -38678218 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr3 179359887 179359908 -38677250 + AT_rich Low_complexity Low_complexity 1 21 0 1783 263 111 14 chr3 179360016 179360681 -38676477 + L2 LINE L2 1484 2213 -1101 13645 205 26 11 chr3 179360689 179365049 -38672109 + L1P5 LINE L1 1344 5782 -369 363 96 0 0 chr3 179365050 179365102 -38672056 + (TA)n Simple_repeat Simple_repeat 1 52 0 27 29 0 0 chr3 179365111 179365145 -38672013 + AT_rich Low_complexity Low_complexity 1 34 0 188 35 35 0 chr3 179365747 179365776 -38671382 + (TA)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr3 179365834 179365856 -38671302 + AT_rich Low_complexity Low_complexity 1 22 0 23 86 0 0 chr3 179366079 179366137 -38671021 + AT_rich Low_complexity Low_complexity 1 58 0 230 232 0 18 chr3 179366765 179366821 -38670337 + GA-rich Low_complexity Low_complexity 2 56 0 28 48 0 0 chr3 179367616 179367658 -38669500 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr3 179368128 179368160 -38668998 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr3 179368242 179368270 -38668888 + AT_rich Low_complexity Low_complexity 1 28 0 234 192 0 0 chr3 179369074 179369126 -38668032 + (TG)n Simple_repeat Simple_repeat 1 52 0 856 296 235 15 chr3 179369150 179369698 -38667460 - L2 LINE L2 -511 2803 2135 21 57 0 0 chr3 179370064 179370099 -38667059 + AT_rich Low_complexity Low_complexity 1 35 0 329 0 24 0 chr3 179371170 179371211 -38665947 + (TC)n Simple_repeat Simple_repeat 2 43 0 282 373 35 0 chr3 179372466 179372635 -38664523 + MIR SINE MIR 32 206 -56 803 186 117 159 chr3 179372822 179373149 -38664009 + LTR28 LTR ERV1 1 970 -785 566 261 141 30 chr3 179373140 179373339 -38663819 + MER52A LTR ERV1 1085 1305 -450 * 33 97 0 0 chr3 179373588 179373691 -38663467 + AT_rich Low_complexity Low_complexity 1 103 0 21 0 0 0 chr3 179374548 179374569 -38662589 + AT_rich Low_complexity Low_complexity 1 21 0 180 345 17 26 chr3 179375066 179375182 -38661976 - L2 LINE L2 -971 2343 2229 1834 173 37 89 chr3 179375515 179376030 -38661128 - L1MA7 LINE L1 -21 7689 7202 25 0 0 0 chr3 179376583 179376608 -38660550 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr3 179377667 179377697 -38659461 + AT_rich Low_complexity Low_complexity 1 30 0 1196 257 0 29 chr3 179378016 179378327 -38658831 + AluJb SINE Alu 1 302 0 21 0 0 0 chr3 179378566 179378587 -38658571 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr3 179379436 179379466 -38657692 + AT_rich Low_complexity Low_complexity 1 30 0 407 245 104 0 chr3 179379466 179379572 -38657586 - MER90 LTR ERV1 -41 573 457 7750 189 12 13 chr3 179379600 179380739 -38656419 - L1MA7 LINE L1 -660 7064 5929 1972 123 14 3 chr3 179380739 179381032 -38656126 - AluSc SINE Alu -13 296 1 7750 189 12 13 chr3 179381032 179381819 -38655339 - L1MA7 LINE L1 -1795 5929 5143 * 17201 169 11 49 chr3 179381803 179385046 -38652112 - L1MA7 LINE L1 -4436 3129 11 21 0 0 0 chr3 179386268 179386289 -38650869 + AT_rich Low_complexity Low_complexity 1 21 0 186 337 135 18 chr3 179386845 179387008 -38650150 - L2 LINE L2 -447 2867 2686 241 273 18 0 chr3 179387035 179387090 -38650068 - MER94 DNA DNA -1 133 78 335 390 46 54 chr3 179387257 179387568 -38649590 - L2 LINE L2 -400 2914 2602 2617 35 3 0 chr3 179387568 179387878 -38649280 + AluY SINE Alu 1 311 0 180 0 0 0 chr3 179387886 179387906 -38649252 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 335 390 46 54 chr3 179387906 179388327 -38648831 - L2 LINE L2 -719 2595 2179 720 220 0 93 chr3 179388596 179388849 -38648309 - L1M2 LINE L1 -621 5547 5324 24 0 0 0 chr3 179388850 179388874 -38648284 + AT_rich Low_complexity Low_complexity 1 24 0 3771 223 34 21 chr3 179389231 179390491 -38646667 + L1MB7 LINE L1 4901 6181 -3 369 0 0 0 chr3 179390550 179390591 -38646567 + (TTG)n Simple_repeat Simple_repeat 1 41 0 1381 213 26 8 chr3 179390591 179390859 -38646299 - AluJb SINE Alu -33 279 7 231 273 82 0 chr3 179391103 179391213 -38645945 + L1MC5 LINE L1 7813 7931 -30 338 259 76 8 chr3 179391905 179392036 -38645122 - L3 LINE CR1 -243 1334 1195 2660 187 18 56 chr3 179393101 179393672 -38643486 - MLT2B3 LTR ERVL 0 554 6 234 174 0 0 chr3 179393847 179393893 -38643265 + (TG)n Simple_repeat Simple_repeat 2 47 0 29 47 0 0 chr3 179394297 179394340 -38642818 + AT_rich Low_complexity Low_complexity 1 43 0 279 0 0 0 chr3 179395076 179395107 -38642051 + (CA)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr3 179395277 179395298 -38641860 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr3 179395416 179395448 -38641710 + AT_rich Low_complexity Low_complexity 1 32 0 27 81 0 0 chr3 179396625 179396687 -38640471 + AT_rich Low_complexity Low_complexity 1 62 0 898 289 67 106 chr3 179397263 179397948 -38639210 + L1M4c LINE L1 766 1440 -5213 339 395 30 6 chr3 179398013 179398180 -38638978 + L1M4c LINE L1 1277 1447 -5206 719 333 34 3 chr3 179398322 179398643 -38638515 + L1M4c LINE L1 1456 1786 -4867 2068 156 15 3 chr3 179398643 179398982 -38638176 - LTR3b LTR ERVK 0 500 158 3892 249 51 38 chr3 179398998 179399764 -38637394 + L1M4c LINE L1 2609 3364 -3368 908 101 0 0 chr3 179399764 179399893 -38637265 + L1MA1 LINE L1 6170 6298 -4 3892 249 51 38 chr3 179399893 179400130 -38637028 + L1M4c LINE L1 3364 3597 -3135 1997 139 0 7 chr3 179400130 179400433 -38636725 + AluSg SINE Alu 1 301 -9 3892 249 51 38 chr3 179400433 179401107 -38636051 + L1M4c LINE L1 3597 4315 -2417 188 86 29 0 chr3 179401179 179401214 -38635944 + (CAGTA)n Simple_repeat Simple_repeat 4 39 0 252 0 0 0 chr3 179401261 179401289 -38635869 + (TAA)n Simple_repeat Simple_repeat 2 29 0 183 216 0 0 chr3 179402329 179402366 -38634792 + MIR SINE MIR 226 262 0 26 50 0 0 chr3 179402642 179402682 -38634476 + AT_rich Low_complexity Low_complexity 1 40 0 1063 190 30 0 chr3 179402689 179402889 -38634269 - MER2 DNA MER2_type -139 206 1 252 230 48 48 chr3 179403102 179403228 -38633930 + L1ME4a LINE L1 5990 6115 -6 499 274 134 18 chr3 179403845 179404009 -38633149 + MIR SINE MIR 6 188 -74 180 335 130 49 chr3 179404650 179405020 -38632138 + L2 LINE L2 2306 2705 -609 286 336 45 15 chr3 179405373 179405507 -38631651 + MIR SINE MIR 7 144 -118 1965 140 21 63 chr3 179405828 179406206 -38630952 - THE1B LTR MaLR -2 362 1 10897 113 6 14 chr3 179406210 179407799 -38629359 - THE1B-int LTR MaLR -4 1576 1 1886 125 20 110 chr3 179407799 179408199 -38628959 - THE1B LTR MaLR 0 364 1 5331 151 23 14 chr3 179408708 179408822 -38628336 - Tigger1 DNA MER2_type 0 2418 2307 1723 184 3 10 chr3 179408822 179409116 -38628042 + AluJb SINE Alu 1 292 -20 5331 151 23 14 chr3 179409116 179409958 -38627200 - Tigger1 DNA MER2_type -111 2307 1453 338 93 56 0 chr3 179409956 179410010 -38627148 - Alu SINE Alu -246 57 1 * 2073 231 36 20 chr3 179410010 179410499 -38626659 - Tigger1 DNA MER2_type -1921 497 1 841 260 39 5 chr3 179410565 179410773 -38626385 - MER20 DNA MER1_type -4 215 1 500 263 129 122 chr3 179412518 179413093 -38624065 + L2 LINE L2 2295 2873 -441 22 35 0 0 chr3 179413622 179413651 -38623507 + AT_rich Low_complexity Low_complexity 1 29 0 30 0 0 0 chr3 179414308 179414338 -38622820 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr3 179414369 179414393 -38622765 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr3 179414616 179414649 -38622509 + AT_rich Low_complexity Low_complexity 1 33 0 231 241 0 0 chr3 179414977 179415031 -38622127 + LTR66 LTR ERVL 386 439 -171 28 71 0 0 chr3 179415123 179415179 -38621979 + AT_rich Low_complexity Low_complexity 1 56 0 6888 62 8 1 chr3 179415496 179416872 -38620286 + L1PA5 LINE L1 4772 6154 0 12277 261 40 20 chr3 179416872 179417436 -38619722 - L1PA13 LINE L1 -1179 5618 5067 234 0 0 0 chr3 179417436 179417462 -38619696 + (TG)n Simple_repeat Simple_repeat 1 26 0 12277 261 40 20 chr3 179417462 179417874 -38619284 - L1PA13 LINE L1 -1730 5067 4665 2360 82 3 0 chr3 179417874 179418178 -38618980 - AluY SINE Alu -6 305 1 12277 261 40 20 chr3 179418178 179419213 -38617945 - L1PA13 LINE L1 -2132 4665 3652 2178 99 3 0 chr3 179419213 179419537 -38617621 - AluSp SINE Alu 0 313 1 12277 261 40 20 chr3 179419537 179423012 -38614146 - L1PA13 LINE L1 -3145 3652 1 3300 238 41 23 chr3 179423018 179423129 -38614029 + L1MB8 LINE L1 4322 4430 -1748 2818 148 6 0 chr3 179423129 179423610 -38613548 - L1MA5 LINE L1 -2 6298 5815 3300 238 41 23 chr3 179423610 179425329 -38611829 + L1MB8 LINE L1 4430 6178 0 317 328 43 24 chr3 179425413 179425666 -38611492 + MIR SINE MIR 2 259 -3 2103 106 7 3 chr3 179426162 179426464 -38610694 + AluSg1 SINE Alu 1 303 -6 297 0 0 0 chr3 179426467 179426500 -38610658 + (GA)n Simple_repeat Simple_repeat 2 34 0 22 35 0 0 chr3 179428989 179429018 -38608140 + AT_rich Low_complexity Low_complexity 1 29 0 1841 142 52 3 chr3 179429079 179429368 -38607790 + AluSx SINE Alu 1 303 -9 183 267 93 27 chr3 179430782 179430857 -38606301 + L2 LINE L2 3147 3226 -46 207 0 0 0 chr3 179431560 179431583 -38605575 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 27 29 0 0 chr3 179431811 179431845 -38605313 + AT_rich Low_complexity Low_complexity 1 34 0 205 191 26 185 chr3 179431945 179432134 -38605024 + L2 LINE L2 3078 3236 -77 842 278 101 53 chr3 179432248 179432645 -38604513 - HAL1 LINE L1 -424 2083 1652 1404 259 56 79 chr3 179432645 179433251 -38603907 + MLT1E LTR MaLR 1 592 -1 842 278 101 53 chr3 179433251 179433396 -38603762 - HAL1 LINE L1 -855 1652 1515 498 200 31 0 chr3 179435660 179435790 -38601368 + L1MA7 LINE L1 6155 6288 -3 865 221 33 122 chr3 179435810 179436204 -38600954 + MLT1A1 LTR MaLR 3 361 -4 22 0 0 0 chr3 179436342 179436364 -38600794 + AT_rich Low_complexity Low_complexity 1 22 0 440 143 0 0 chr3 179436432 179436509 -38600649 - Alu SINE Alu 0 312 236 2311 89 0 0 chr3 179437265 179437558 -38599600 - AluY SINE Alu -18 293 1 939 244 52 12 chr3 179438271 179438595 -38598563 - MER114 LTR ERV -311 337 1 1269 108 46 0 chr3 179438611 179438806 -38598352 - L1MA5A LINE L1 -71 6226 6023 334 169 0 0 chr3 179438806 179438875 -38598283 + L1MA5A LINE L1 6222 6292 -5 1438 168 23 48 chr3 179439076 179439283 -38597875 + MLT2C2 LTR ERVL 3 201 -263 2099 124 48 25 chr3 179439283 179439638 -38597520 - THE1B LTR MaLR -1 363 1 1438 168 23 48 chr3 179439638 179439740 -38597418 + MLT2C2 LTR ERVL 201 304 -160 4658 204 51 52 chr3 179440192 179440685 -38596473 + L1MC2 LINE L1 3930 4422 -1922 1354 200 55 0 chr3 179440685 179440960 -38596198 + AluJb SINE Alu 1 290 -22 4658 204 51 52 chr3 179440960 179441084 -38596074 + L1MC2 LINE L1 4422 4545 -1799 2207 94 13 0 chr3 179441084 179441391 -38595767 + AluY SINE Alu 1 311 0 4658 204 51 52 chr3 179441391 179441465 -38595693 + L1MC2 LINE L1 4545 4618 -1726 2326 86 0 0 chr3 179441465 179441766 -38595392 + AluY SINE Alu 3 303 -8 4658 204 51 52 chr3 179441766 179443491 -38593667 + L1MC2 LINE L1 4618 6328 -16 241 203 54 14 chr3 179443499 179443573 -38593585 + L1M4 LINE L1 3336 3412 -2734 1220 106 0 0 chr3 179443586 179443756 -38593402 + AluY SINE Alu 135 304 -7 24 32 0 0 chr3 179444363 179444394 -38592764 + AT_rich Low_complexity Low_complexity 1 31 0 1421 225 27 58 chr3 179445000 179445364 -38591794 - MLT1C LTR MaLR -2 465 113 2827 96 10 0 chr3 179445364 179445758 -38591400 - MER41A LTR ERV1 0 554 157 1344 120 116 5 chr3 179445759 179445975 -38591183 + MER41-int LTR ERV1 605 844 -5102 3499 146 76 25 chr3 179446011 179446640 -38590518 + MER41-int LTR ERV1 946 1606 -4340 26 0 0 0 chr3 179446696 179446722 -38590436 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr3 179447692 179447722 -38589436 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr3 179447999 179448027 -38589131 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 179449046 179449067 -38588091 + AT_rich Low_complexity Low_complexity 1 21 0 36 77 0 0 chr3 179449851 179449929 -38587229 + AT_rich Low_complexity Low_complexity 1 78 0 201 74 0 0 chr3 179450015 179450042 -38587116 + (GA)n Simple_repeat Simple_repeat 2 28 0 21 71 0 0 chr3 179450445 179450487 -38586671 + AT_rich Low_complexity Low_complexity 1 42 0 25 51 0 0 chr3 179451065 179451104 -38586054 + AT_rich Low_complexity Low_complexity 1 39 0 271 331 58 16 chr3 179452157 179452278 -38584880 + MIR SINE MIR 8 133 -129 1409 220 24 51 chr3 179453466 179453802 -38583356 + MLT2B3 LTR ERVL 162 488 -66 25 83 0 0 chr3 179454267 179454327 -38582831 + AT_rich Low_complexity Low_complexity 1 60 0 1649 170 0 69 chr3 179454341 179454676 -38582482 - AluJo SINE Alu 0 312 1 209 365 17 35 chr3 179454764 179454879 -38582279 - MIR SINE MIR -114 148 36 245 242 182 0 chr3 179454982 179455081 -38582077 - MIR SINE MIR -71 191 75 986 259 87 39 chr3 179455474 179455956 -38581202 - MLT1D LTR MaLR 0 505 1 278 263 192 45 chr3 179456654 179456810 -38580348 + MIR SINE MIR 19 197 -65 696 352 59 47 chr3 179456814 179457873 -38579285 - L2 LINE L2 -13 3300 2235 387 357 31 18 chr3 179658018 179658245 -38378913 + L1MEc LINE L1 1565 1794 -4602 2126 112 10 13 chr3 179658294 179658598 -38378560 - AluSg SINE Alu -7 303 1 1561 319 86 67 chr3 179659239 179659622 -38377536 + MER97a DNA MER1_type? 12 386 -508 1981 149 0 7 chr3 179659622 179659918 -38377240 - AluSx SINE Alu -18 294 1 1561 319 86 67 chr3 179659918 179660396 -38376762 + MER97a DNA MER1_type? 386 889 -5 344 303 83 8 chr3 179661201 179661333 -38375825 + MIR SINE MIR 59 200 -62 281 338 29 31 chr3 179662095 179662280 -38374878 + MIR SINE MIR 74 261 -1 310 299 75 21 chr3 179662374 179662561 -38374597 - L1ME3A LINE L1 -2 6168 5972 1630 280 94 31 chr3 179662705 179663401 -38373757 + L2 LINE L2 2425 3195 -118 200 83 0 28 chr3 179663401 179663437 -38373721 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1630 280 94 31 chr3 179663437 179663547 -38373611 + L2 LINE L2 3195 3297 -16 229 323 88 35 chr3 179663689 179663949 -38373209 - L2 LINE L2 -346 2968 2695 2395 231 119 27 chr3 179665780 179666012 -38371146 - L1MC4 LINE L1 -124 7918 7709 2187 112 3 3 chr3 179666012 179666316 -38370842 - AluSx SINE Alu -8 304 1 2395 231 119 27 chr3 179666316 179666982 -38370176 - L1MC4 LINE L1 -333 7709 6937 13716 27 0 0 chr3 179668181 179669831 -38367327 - L1P LINE L1 -2131 4015 2366 10752 15 0 0 chr3 179669849 179671868 -38365290 + L1HS LINE L1 4137 6155 0 268 355 100 3 chr3 179672294 179672440 -38364718 + MIR3 SINE MIR 33 190 -18 514 269 123 6 chr3 179673186 179673357 -38363801 - MER58A DNA MER1_type -32 192 2 423 307 36 7 chr3 179673519 179673656 -38363502 + L3b LINE CR1 1355 1495 -88 237 315 22 11 chr3 179674194 179674286 -38362872 - MIR3 SINE MIR 0 208 116 283 255 245 30 chr3 179675112 179675312 -38361846 + MARNA DNA Mariner 190 432 -154 1177 187 40 87 chr3 179675376 179675756 -38361402 - L1ME2 LINE L1 0 6164 5803 198 273 0 18 chr3 179676034 179676089 -38361069 - L2 LINE L2 -3 3310 3257 216 373 0 0 chr3 179677121 179677196 -38359962 - L2 LINE L2 -8 3305 3231 238 261 14 14 chr3 179677301 179677370 -38359788 + MIR3 SINE MIR 134 202 -6 485 300 110 31 chr3 179677465 179677692 -38359466 + MIR SINE MIR 18 262 0 228 191 0 24 chr3 179680511 179680553 -38356605 - MLT1L LTR MaLR -226 389 349 1212 41 0 0 chr3 179681077 179681223 -38355935 - AluY SINE Alu -9 302 157 24 0 0 0 chr3 179681401 179681425 -38355733 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr3 179682218 179682245 -38354913 + AT_rich Low_complexity Low_complexity 1 27 0 2322 110 0 0 chr3 179682593 179682903 -38354255 - AluSg SINE Alu 0 310 1 550 272 45 35 chr3 179683028 179683230 -38353928 + MLT1I LTR MaLR 7 210 -199 326 292 121 81 chr3 179683344 179683775 -38353383 - L1MEd LINE L1 -5010 1109 662 212 242 32 0 chr3 179684288 179684350 -38352808 + (TA)n Simple_repeat Simple_repeat 2 65 0 1965 124 17 0 chr3 179685164 179685454 -38351704 + AluSx SINE Alu 1 295 -17 1884 191 48 17 chr3 179685569 179686001 -38351157 + MLT1C LTR MaLR 6 467 0 1018 292 66 29 chr3 179687145 179687758 -38349400 - L2 LINE L2 0 3313 2675 21 0 0 0 chr3 179687934 179687955 -38349203 + AT_rich Low_complexity Low_complexity 1 21 0 262 239 137 17 chr3 179688189 179688306 -38348852 + L1MC5 LINE L1 7011 7141 -820 749 263 168 29 chr3 179688788 179689169 -38347989 - MLT1J LTR MaLR -1 510 77 224 337 11 22 chr3 179689204 179689296 -38347862 - MIR SINE MIR -84 178 88 217 160 20 20 chr3 179689364 179689414 -38347744 - MER5C DNA MER1_type 0 324 275 19597 160 31 20 chr3 179689471 179692515 -38344643 - L1MA2 LINE L1 -6 7717 4706 2299 103 0 3 chr3 179692515 179692827 -38344331 - AluSx SINE Alu -1 311 1 19597 160 31 20 chr3 179692827 179694974 -38342184 - L1MA2 LINE L1 -3017 4706 2583 577 89 33 0 chr3 179694974 179695064 -38342094 - L1PA5 LINE L1 0 6154 6062 19597 160 31 20 chr3 179695064 179697496 -38339662 - L1MA2 LINE L1 -5140 2583 14 320 318 19 9 chr3 179697531 179697638 -38339520 - MER5C DNA MER1_type -205 119 12 201 74 0 0 chr3 179697796 179697823 -38339335 + (TG)n Simple_repeat Simple_repeat 2 28 0 365 297 62 7 chr3 179698207 179698352 -38338806 + MER117 DNA MER1_type 38 190 -7 213 65 0 0 chr3 179699314 179699345 -38337813 + (CA)n Simple_repeat Simple_repeat 2 32 0 2671 104 75 0 chr3 179699345 179699730 -38337428 - LTR46 LTR ERV1 -46 414 1 4361 57 67 10 chr3 179699803 179700401 -38336757 + L1PA6 LINE L1 5519 6150 -4 1725 280 94 17 chr3 179700413 179700956 -38336202 + L1ME1 LINE L1 35 635 -5761 3548 149 25 21 chr3 179700956 179701606 -38335552 + MER39B LTR ERV1 2 653 0 1725 280 94 17 chr3 179701606 179701697 -38335461 + L1ME1 LINE L1 635 718 -5678 * 7796 230 51 38 chr3 179701695 179702357 -38334801 + L1ME1 LINE L1 2757 3409 -2826 2099 114 0 36 chr3 179702357 179702664 -38334494 + AluSq SINE Alu 5 300 -13 7796 230 51 38 chr3 179702664 179703174 -38333984 + L1ME1 LINE L1 3409 3911 -2324 2322 94 34 17 chr3 179703174 179703526 -38333632 + L1PA12 LINE L1 5811 6168 0 7796 230 51 38 chr3 179703526 179703619 -38333539 + L1ME1 LINE L1 3911 4001 -2234 2295 139 3 16 chr3 179703619 179703969 -38333189 - L1PB1 LINE L1 -8 6143 5797 327 49 0 0 chr3 179703969 179704010 -38333148 + (TA)n Simple_repeat Simple_repeat 1 41 0 2295 139 3 16 chr3 179704010 179704046 -38333112 - L1PB1 LINE L1 -354 5797 5762 7796 230 51 38 chr3 179704046 179705383 -38331775 + L1ME1 LINE L1 4001 5407 -828 2761 146 15 6 chr3 179705383 179705863 -38331295 + L1MA4 LINE L1 5813 6296 -4 7796 230 51 38 chr3 179705863 179706698 -38330460 + L1ME1 LINE L1 5407 6230 -5 299 277 116 36 chr3 179706930 179707042 -38330116 - L3 LINE CR1 -80 1497 1377 272 336 98 0 chr3 179707519 179707537 -38329621 + MIR SINE MIR 103 118 -144 1599 214 20 50 chr3 179707537 179707938 -38329220 - MLT1B LTR MaLR -1 389 1 272 336 98 0 chr3 179707938 179708062 -38329096 + MIR SINE MIR 118 259 -3 194 127 254 56 chr3 179709364 179709435 -38327723 - L2 LINE L2 0 3313 3229 21 0 0 0 chr3 179710195 179710216 -38326942 + AT_rich Low_complexity Low_complexity 1 21 0 195 178 356 11 chr3 179710277 179710367 -38326791 + MER5C DNA MER1_type 1 121 -203 341 240 0 0 chr3 179710516 179710591 -38326567 - HsTC2 DNA Tc2 -1816 82 8 22 0 0 0 chr3 179710591 179710613 -38326545 + AT_rich Low_complexity Low_complexity 1 22 0 229 236 87 62 chr3 179711943 179712104 -38325054 - L1ME LINE L1 -273 5848 5684 202 261 115 62 chr3 179712105 179712235 -38324923 - MIR SINE MIR -54 208 72 308 275 199 0 chr3 179713430 179713561 -38323597 + MIR SINE MIR 106 262 0 229 358 12 12 chr3 179713596 179713677 -38323481 + MIR SINE MIR 20 100 -162 1991 101 17 7 chr3 179713679 179713966 -38323192 - AluSc SINE Alu -12 297 8 1422 209 3 16 chr3 179715224 179715530 -38321628 + AluJb SINE Alu 1 302 -10 396 317 91 30 chr3 179716578 179717268 -38319890 + L1 LINE L1 2896 3688 -2458 279 228 133 109 chr3 179717343 179717554 -38319604 + MLT1L LTR MaLR 40 255 -360 252 342 75 48 chr3 179717605 179717792 -38319366 + MLT1L LTR MaLR 346 537 -78 338 0 24 0 chr3 179717792 179717834 -38319324 + (CA)n Simple_repeat Simple_repeat 2 44 0 25 95 0 0 chr3 179718057 179718131 -38319027 + AT_rich Low_complexity Low_complexity 1 74 0 352 279 49 66 chr3 179718756 179718939 -38318219 + L1 LINE L1 4879 5058 -1088 332 374 14 7 chr3 179719828 179719967 -38317191 - Tigger8 DNA MER2_type -518 148 9 6155 34 0 7 chr3 179720390 179721134 -38316024 + L1PA4 LINE L1 5417 6155 0 251 221 0 13 chr3 179721407 179721484 -38315674 + (TA)n Simple_repeat Simple_repeat 1 76 0 328 311 75 73 chr3 179721841 179722469 -38314689 - HAL1 LINE L1 -732 1775 1147 40 21 0 0 chr3 179722580 179722627 -38314531 + AT_rich Low_complexity Low_complexity 1 47 0 233 289 87 39 chr3 179723638 179723846 -38313312 + L1ME4a LINE L1 5886 6103 -18 27 62 0 0 chr3 179723849 179723897 -38313261 + AT_rich Low_complexity Low_complexity 1 48 0 1673 205 25 33 chr3 179724146 179724541 -38312617 + Charlie1a DNA MER1_type 1 392 -1063 * 2195 164 60 91 chr3 179724537 179724976 -38312182 + Charlie1a DNA MER1_type 846 1297 -1464 243 0 0 0 chr3 179724976 179725003 -38312155 + (TA)n Simple_repeat Simple_repeat 1 27 0 2195 164 60 91 chr3 179725003 179725042 -38312116 + Charlie1a DNA MER1_type 1297 1336 -1425 2117 96 7 4 chr3 179725042 179725322 -38311836 + AluSc SINE Alu 6 286 -23 2195 164 60 91 chr3 179725322 179725361 -38311797 + Charlie1a DNA MER1_type 1336 1375 -1386 2035 112 0 0 chr3 179725361 179725630 -38311528 + AluSx SINE Alu 1 269 -43 2195 164 60 91 chr3 179725630 179725713 -38311445 + Charlie1a DNA MER1_type 1375 1429 -26 270 295 95 29 chr3 179725744 179725849 -38311309 - MIR SINE MIR -148 114 3 318 328 68 51 chr3 179726583 179726760 -38310398 - MER91A DNA MER1_type 0 196 17 1757 196 16 25 chr3 179727715 179728078 -38309080 - MLT1A1 LTR MaLR 0 365 6 459 0 0 0 chr3 179729957 179730008 -38307150 + (TG)n Simple_repeat Simple_repeat 2 52 0 206 320 77 83 chr3 179731843 179732024 -38305134 - L2 LINE L2 -10 3262 3083 1277 188 24 20 chr3 179732081 179732331 -38304827 + MLT1A1 LTR MaLR 115 365 0 319 189 98 70 chr3 179732499 179732642 -38304516 - L1MC5 LINE L1 -299 7662 7516 4965 52 0 0 chr3 179732702 179733337 -38303821 + L1P LINE L1 1542 2176 -3970 1335 111 10 0 chr3 179733359 179733567 -38303591 - L1MA5A LINE L1 -10 6287 6078 437 172 221 0 chr3 179734358 179734480 -38302678 - HsTC2 DNA Tc2 -7 1891 1743 373 187 13 0 chr3 179734727 179734812 -38302346 - HsTC2 DNA Tc2 -1812 86 1 192 275 150 0 chr3 179736506 179736586 -38300572 + MIR3 SINE MIR 99 190 -18 24 32 0 0 chr3 179737015 179737046 -38300112 + AT_rich Low_complexity Low_complexity 1 31 0 301 262 141 37 chr3 179737198 179737389 -38299769 + MIR SINE MIR 8 218 -44 260 321 54 33 chr3 179737442 179737598 -38299560 + MIR SINE MIR 30 191 -64 998 282 111 39 chr3 179738834 179739436 -38297722 - MER115 DNA AcHobo 0 693 6 206 224 20 0 chr3 179739622 179739671 -38297487 + CT-rich Low_complexity Low_complexity 5 54 0 180 320 101 76 chr3 179739904 179739930 -38297228 + L2 LINE L2 1773 1797 -1517 753 207 26 47 chr3 179739930 179740123 -38297035 - MER5A DNA MER1_type 0 189 1 180 320 101 76 chr3 179740123 179740412 -38296746 + L2 LINE L2 1797 2096 -1218 285 29 0 0 chr3 179741781 179741815 -38295343 + (CA)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr3 179742397 179742419 -38294739 + AT_rich Low_complexity Low_complexity 1 22 0 308 283 0 30 chr3 179742476 179742575 -38294583 - MER5B DNA MER1_type -82 96 1 260 306 0 31 chr3 179743796 179743894 -38293264 + L2 LINE L2 3219 3313 0 295 234 57 64 chr3 179743897 179744038 -38293120 - MLT1K LTR MaLR 0 588 449 432 227 114 15 chr3 179744699 179744831 -38292327 - LTR33 LTR ERVL 0 521 377 775 217 133 0 chr3 179744944 179745124 -38292034 + MER20 DNA MER1_type 16 219 0 593 273 51 0 chr3 179745228 179745404 -38291754 - LTR33 LTR ERVL -336 185 1 1705 187 0 0 chr3 179746287 179746581 -38290577 + AluJo SINE Alu 14 307 -5 408 276 77 41 chr3 179746848 179747069 -38290089 - MLT1K LTR MaLR -1 587 359 334 317 28 14 chr3 179747125 179747267 -38289891 - MLT1K LTR MaLR -342 246 103 488 323 70 6 chr3 179747374 179747532 -38289626 - MIR3 SINE MIR -18 190 23 1476 159 0 0 chr3 179748460 179748705 -38288453 - L1MA8 LINE L1 -464 5827 5583 210 71 0 0 chr3 179749086 179749114 -38288044 + (A)n Simple_repeat Simple_repeat 1 28 0 4887 152 34 4 chr3 179749254 179750252 -38286906 - L1PA16 LINE L1 -10 6156 5130 2428 207 8 8 chr3 179750253 179750789 -38286369 + L1PA16 LINE L1 4577 5112 -1034 796 287 39 18 chr3 179752606 179752892 -38284266 + LTR40b LTR ERVL 133 424 -38 234 322 0 11 chr3 179753195 179753282 -38283876 + T-rich Low_complexity Low_complexity 4 89 0 418 276 28 21 chr3 179753334 179753479 -38283679 - L2 LINE L2 -1 3312 3167 213 65 0 0 chr3 179756729 179756760 -38280398 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1965 68 61 4 chr3 179756763 179757027 -38280131 - AluY SINE Alu -32 279 1 369 340 146 21 chr3 179759803 179760138 -38277020 + L2 LINE L2 2882 3258 -55 1427 283 156 39 chr3 179760180 179762084 -38275074 - HAL1 LINE L1 -355 2152 1 895 190 75 0 chr3 179762151 179762325 -38274833 - MER5A DNA MER1_type 0 189 3 194 271 68 0 chr3 179762400 179762459 -38274699 + L2 LINE L2 2992 3054 -218 261 279 0 25 chr3 179762621 179762700 -38274458 + CT-rich Low_complexity Low_complexity 2 78 0 4514 157 65 29 chr3 179763158 179764133 -38273025 - L1MB7 LINE L1 0 6184 5180 5690 145 21 1 chr3 179764359 179765289 -38271869 + Tigger1 DNA MER2_type 1466 2414 -4 4582 172 31 2 chr3 179765291 179766161 -38270997 + L1MB2 LINE L1 5267 6161 -10 21 0 0 0 chr3 179768575 179768596 -38268562 + AT_rich Low_complexity Low_complexity 1 21 0 2258 66 30 3 chr3 179769148 179769449 -38267709 + AluSg SINE Alu 1 309 -1 207 0 0 0 chr3 179769683 179769706 -38267452 + (T)n Simple_repeat Simple_repeat 1 23 0 622 240 157 0 chr3 179773544 179773748 -38263410 - MIR SINE MIR -18 244 9 21 0 0 0 chr3 179774869 179774890 -38262268 + AT_rich Low_complexity Low_complexity 1 21 0 1457 219 56 34 chr3 179774920 179775277 -38261881 - MLT1A1 LTR MaLR 0 365 1 2024 130 7 3 chr3 179775343 179775628 -38261530 - AluSx SINE Alu -26 286 1 683 281 42 50 chr3 179775767 179775895 -38261263 - MIR SINE MIR -19 243 115 1800 143 51 43 chr3 179775895 179776265 -38260893 - THE1C LTR MaLR 0 375 3 9064 133 25 51 chr3 179776267 179777887 -38259271 - THE1C-int LTR MaLR 0 1580 3 1841 135 74 41 chr3 179777889 179778252 -38258906 - THE1C LTR MaLR 0 375 1 683 281 42 50 chr3 179778252 179778355 -38258803 - MIR SINE MIR -149 113 8 255 262 128 52 chr3 179779157 179779329 -38257829 + L2 LINE L2 2136 2320 -994 785 228 15 123 chr3 179779850 179780118 -38257040 - MIR SINE MIR -21 241 3 217 161 62 37 chr3 179780139 179780220 -38256938 + (TTTA)n Simple_repeat Simple_repeat 1 83 0 1840 220 51 37 chr3 179780247 179780757 -38256401 - LTR40a LTR ERVL -2 517 1 287 301 175 74 chr3 179781021 179781330 -38255828 - L2 LINE L2 -1 3271 2932 1344 147 28 20 chr3 179783366 179783618 -38253540 + L1MA9 LINE L1 6059 6312 0 2216 104 3 7 chr3 179785421 179785718 -38251440 + AluSp SINE Alu 1 296 -17 1560 173 50 3 chr3 179785888 179786230 -38250928 - L1MB2 LINE L1 0 6171 5814 556 126 0 45 chr3 179786230 179786335 -38250823 - L1PA15 LINE L1 -6 6159 6054 1643 148 83 40 chr3 179786335 179786659 -38250499 - L1MB2 LINE L1 -347 5824 5487 839 125 0 0 chr3 179786664 179786800 -38250358 - L1MA8 LINE L1 -3 6288 6153 937 236 80 20 chr3 179786975 179787276 -38249882 + MER46C DNA MER2_type 5 323 -15 2011 133 0 14 chr3 179787393 179787686 -38249472 - AluJb SINE Alu -22 290 2 2204 142 61 93 chr3 179787913 179788440 -38248718 + L1PB4 LINE L1 5443 5952 -204 1718 154 3 7 chr3 179788444 179788749 -38248409 + L1PB4 LINE L1 5851 6154 -2 2346 94 0 3 chr3 179789220 179789519 -38247639 - AluSg SINE Alu -12 298 1 971 224 95 27 chr3 179790546 179790916 -38246242 + L1ME4a LINE L1 5725 6119 -2 1119 197 10 0 chr3 179791642 179791850 -38245308 - MER2 DNA MER2_type -134 211 2 512 322 94 17 chr3 179791903 179792136 -38245022 - MIR SINE MIR 0 262 12 229 231 51 17 chr3 179792528 179792645 -38244513 - L1ME4a LINE L1 -12 6109 5989 263 372 88 47 chr3 179793231 179793615 -38243543 - L2 LINE L2 -6 3266 2867 239 331 172 19 chr3 179793858 179794166 -38242992 - L2 LINE L2 -801 2513 2159 653 263 127 4 chr3 179794198 179794426 -38242732 + MIR SINE MIR 2 257 -5 494 346 63 53 chr3 179795334 179795733 -38241425 - L2 LINE L2 -1 3271 2869 207 0 0 0 chr3 179796718 179796741 -38240417 + (T)n Simple_repeat Simple_repeat 1 23 0 429 20 0 0 chr3 179797255 179797305 -38239853 + (TG)n Simple_repeat Simple_repeat 2 51 0 1145 291 94 34 chr3 179797387 179798154 -38239004 + L2 LINE L2 2507 3313 0 258 361 57 0 chr3 179798459 179798581 -38238577 - MIR SINE MIR -106 156 28 180 359 76 99 chr3 179798826 179799049 -38238109 + L2 LINE L2 2999 3216 -56 295 289 62 36 chr3 179799347 179799541 -38237617 - MIR SINE MIR -58 204 6 29 60 0 0 chr3 179801006 179801056 -38236102 + AT_rich Low_complexity Low_complexity 1 50 0 458 316 26 7 chr3 179801069 179801221 -38235937 - MIR SINE MIR -105 157 3 27 0 0 0 chr3 179801237 179801264 -38235894 + AT_rich Low_complexity Low_complexity 1 27 0 246 250 12 12 chr3 179801328 179801408 -38235750 + T-rich Low_complexity Low_complexity 2 81 0 713 291 101 0 chr3 179802695 179802922 -38234236 + MIR SINE MIR 3 252 -10 269 343 37 0 chr3 179803164 179803272 -38233886 + L3 LINE CR1 463 574 -1003 268 222 161 0 chr3 179804519 179804600 -38232558 + MER94 DNA DNA 1 94 -40 21 0 0 0 chr3 179804706 179804727 -38232431 + AT_rich Low_complexity Low_complexity 1 21 0 658 295 58 39 chr3 179804761 179805280 -38231878 - L1ME4a LINE L1 -69 6052 5524 2043 123 7 7 chr3 179805498 179805800 -38231358 - AluSx SINE Alu -10 302 1 377 290 69 28 chr3 179807088 179807233 -38229925 + L3b LINE CR1 1270 1420 -163 199 352 66 0 chr3 179808289 179808380 -38228778 - L2 LINE L2 -639 2675 2579 197 336 26 62 chr3 179808654 179808767 -38228391 - L2 LINE L2 -27 3245 3137 409 325 56 7 chr3 179811320 179811474 -38225684 - MIR SINE MIR -52 210 48 31 44 0 0 chr3 179811496 179811541 -38225617 + AT_rich Low_complexity Low_complexity 1 45 0 2272 87 43 0 chr3 179812009 179812309 -38224849 + AluSp SINE Alu 1 313 0 211 323 58 45 chr3 179812376 179812531 -38224627 - L2 LINE L2 -12 3260 3104 267 274 0 0 chr3 179813026 179813088 -38224070 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 217 300 0 0 chr3 179813114 179813164 -38223994 + polypyrimidine Low_complexity Low_complexity 3 52 0 221 309 18 0 chr3 179813351 179813406 -38223752 + L2 LINE L2 3201 3256 -16 220 438 76 7 chr3 179814949 179815093 -38222065 - L2 LINE L2 0 3272 3119 1306 105 0 0 chr3 179815458 179815629 -38221529 + AluSg/x SINE Alu 126 296 -16 237 261 11 33 chr3 179816004 179816096 -38221062 + CT-rich Low_complexity Low_complexity 1 90 0 1059 165 28 0 chr3 179816220 179816402 -38220756 - MER5A DNA MER1_type -2 187 1 3087 143 37 34 chr3 179817170 179817766 -38219392 - L1MA8 LINE L1 -43 6248 5651 4755 150 42 31 chr3 179817785 179819529 -38217629 - L1PA3 LINE L1 0 6155 4405 1278 198 99 0 chr3 179819787 179820029 -38217129 - AluJb SINE Alu -46 266 1 198 91 0 0 chr3 179821706 179821739 -38215419 + (T)n Simple_repeat Simple_repeat 1 33 0 220 319 14 0 chr3 179821775 179821847 -38215311 - MIR SINE MIR -4 258 186 1785 174 0 25 chr3 179822300 179822616 -38214542 + AluJb SINE Alu 1 308 -4 2023 133 0 0 chr3 179823610 179823888 -38213270 + AluSx SINE Alu 1 278 -34 221 57 29 0 chr3 179823891 179823926 -38213232 + (CAA)n Simple_repeat Simple_repeat 1 36 0 1961 144 10 26 chr3 179823933 179824246 -38212912 + AluSx SINE Alu 1 308 -4 230 104 0 21 chr3 179824266 179824314 -38212844 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 30 0 0 0 chr3 179824486 179824516 -38212642 + AT_rich Low_complexity Low_complexity 1 30 0 315 0 0 0 chr3 179824554 179824589 -38212569 + (CA)n Simple_repeat Simple_repeat 2 36 0 25 0 0 0 chr3 179824589 179824614 -38212544 + AT_rich Low_complexity Low_complexity 1 25 0 1900 238 51 97 chr3 179824799 179825565 -38211593 - MER21B LTR ERV1 -132 731 1 254 232 78 78 chr3 179825885 179826169 -38210989 + L1M4 LINE L1 2266 2549 -3597 4927 90 10 12 chr3 179826525 179827247 -38209911 - L1PA13 LINE L1 -1 6162 5443 275 180 56 67 chr3 179827267 179827356 -38209802 - MER34 LTR ERV1 -6 536 449 334 335 70 5 chr3 179827772 179827972 -38209186 + L2 LINE L2 2843 3055 -217 2047 81 7 0 chr3 179828130 179828403 -38208755 - L1PA7 LINE L1 -1 6153 5879 487 271 50 7 chr3 179828656 179828796 -38208362 + LTR16C LTR ERVL 327 472 -19 350 83 0 33 chr3 179828836 179828896 -38208262 + (TGGA)n Simple_repeat Simple_repeat 1 58 0 194 297 99 33 chr3 179829559 179829650 -38207508 + L2 LINE L2 3191 3287 -26 1404 205 39 21 chr3 179831392 179831675 -38205483 - AluJo SINE Alu -24 288 1 439 245 133 58 chr3 179831715 179831903 -38205255 + MIR SINE MIR 60 261 -1 21 0 0 0 chr3 179832528 179832549 -38204609 + AT_rich Low_complexity Low_complexity 1 21 0 904 189 8 57 chr3 179832631 179832879 -38204279 - MER106A DNA MER1_type 0 236 1 262 302 17 9 chr3 179833096 179833212 -38203946 + (TA)n Simple_repeat Simple_repeat 1 117 0 2755 17 0 0 chr3 179834430 179834732 -38202426 - AluY SINE Alu -9 302 1 352 223 239 8 chr3 179834844 179834974 -38202184 - MER5A DNA MER1_type 0 189 30 204 253 13 13 chr3 179835654 179835733 -38201425 + (TTAA)n Simple_repeat Simple_repeat 1 79 0 23 33 0 0 chr3 179836603 179836633 -38200525 + AT_rich Low_complexity Low_complexity 1 30 0 306 194 0 0 chr3 179837518 179837585 -38199573 + (TATATG)n Simple_repeat Simple_repeat 2 68 0 22 56 0 0 chr3 179837667 179837703 -38199455 + AT_rich Low_complexity Low_complexity 1 36 0 217 211 0 0 chr3 179837872 179837910 -38199248 + polypyrimidine Low_complexity Low_complexity 3 40 0 347 278 178 5 chr3 179837986 179838177 -38198981 - L1MC/D LINE L1 -1997 5811 5588 2313 78 7 3 chr3 179838905 179839198 -38197960 + AluY SINE Alu 1 294 -17 182 304 174 0 chr3 179839306 179839375 -38197783 - L2 LINE L2 -14 3299 3219 2255 98 7 0 chr3 179839629 179839924 -38197234 + AluSq SINE Alu 1 297 -16 23 0 0 0 chr3 179839987 179840010 -38197148 + AT_rich Low_complexity Low_complexity 1 23 0 1968 135 70 17 chr3 179840185 179840541 -38196617 - THE1C LTR MaLR 0 375 1 341 356 10 0 chr3 179840675 179840779 -38196379 + MIR SINE MIR 40 144 -64 * 404 338 107 14 chr3 179840774 179840990 -38196168 - MIR SINE MIR 0 262 27 2893 145 5 5 chr3 179841391 179841839 -38195319 + MLT1C LTR MaLR 1 448 -19 2246 106 7 0 chr3 179842135 179842437 -38194721 - AluSg SINE Alu -6 304 1 560 172 0 0 chr3 179842437 179842524 -38194634 + Tigger4(Zombi) DNA MER2_type 1 87 -2644 * 2081 96 33 71 chr3 179842521 179842917 -38194241 + Tigger4(Zombi) DNA MER2_type 2295 2675 -56 613 133 0 19 chr3 179842914 179843019 -38194139 + Tigger4(Zombi) DNA MER2_type 2629 2731 0 * 1001 282 17 0 chr3 179843599 179843833 -38193325 - MIR SINE MIR -24 238 1 1652 113 53 83 chr3 179844404 179844482 -38192676 - Tigger7 DNA MER2_type -1 2586 2507 198 0 0 0 chr3 179844482 179844504 -38192654 + (TA)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chr3 179844503 179844525 -38192633 + (CA)n Simple_repeat Simple_repeat 2 23 0 1652 113 53 83 chr3 179844504 179844783 -38192375 - Tigger7 DNA MER2_type -80 2507 2260 * 3094 174 30 2 chr3 179844781 179845310 -38191848 - Tigger7 DNA MER2_type -1920 567 24 410 269 13 7 chr3 179846463 179846612 -38190546 + MER103 DNA DNA 8 157 -9 180 0 0 0 chr3 179846682 179846702 -38190456 + (CA)n Simple_repeat Simple_repeat 2 21 0 24 53 0 0 chr3 179846745 179846783 -38190375 + AT_rich Low_complexity Low_complexity 1 38 0 482 290 65 6 chr3 179846842 179847011 -38190147 - MIR SINE MIR -50 212 34 26 0 0 0 chr3 179847078 179847104 -38190054 + AT_rich Low_complexity Low_complexity 1 26 0 840 241 98 118 chr3 179847859 179848427 -38188731 + MER77 LTR ERV1 71 601 -4 248 26 0 53 chr3 179850624 179850662 -38186496 + (CTATA)n Simple_repeat Simple_repeat 2 37 0 222 37 0 0 chr3 179851100 179851127 -38186031 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 328 374 17 29 chr3 179851168 179851342 -38185816 + L3 LINE CR1 1400 1571 -6 270 291 127 9 chr3 179851344 179851454 -38185704 + L2 LINE L2 3150 3272 0 22 35 0 0 chr3 179851719 179851748 -38185410 + AT_rich Low_complexity Low_complexity 1 29 0 416 310 22 22 chr3 179853729 179853909 -38183249 - MIR SINE MIR -53 155 18 340 286 36 43 chr3 179855382 179855496 -38181662 + MIR SINE MIR 124 238 -24 1581 138 122 62 chr3 179855496 179855850 -38181308 + THE1C LTR MaLR 1 375 0 340 286 36 43 chr3 179855850 179855875 -38181283 + MIR SINE MIR 238 262 0 191 360 45 9 chr3 179856420 179856531 -38180627 + MIR3 SINE MIR 90 204 -4 228 319 32 11 chr3 179856915 179857009 -38180149 - MER117 DNA MER1_type -31 166 71 1239 226 68 35 chr3 179857172 179857539 -38179619 + MLT1B LTR MaLR 1 379 -11 207 322 34 0 chr3 179857996 179858055 -38179103 - MIR SINE MIR -127 81 21 820 273 87 12 chr3 179858207 179858449 -38178709 - MIR SINE MIR -2 260 1 619 319 50 13 chr3 179858628 179858866 -38178292 + MIR SINE MIR 2 248 -14 218 179 26 0 chr3 179858868 179858907 -38178251 + (CCA)n Simple_repeat Simple_repeat 1 40 0 334 294 156 6 chr3 179859406 179859588 -38177570 + MIR SINE MIR 30 238 -24 1978 136 14 0 chr3 179859996 179860283 -38176875 + AluSx SINE Alu 5 295 -17 676 293 48 38 chr3 179860417 179860707 -38176451 + L2 LINE L2 3019 3311 -2 1563 201 44 85 chr3 179861460 179861987 -38175171 + MLT1D LTR MaLR 1 505 0 825 202 45 63 chr3 179863207 179863430 -38173728 - MER20 DNA MER1_type 0 219 1 720 143 75 0 chr3 179864199 179864332 -38172826 - MER20 DNA MER1_type 0 219 77 219 294 117 61 chr3 179864429 179864606 -38172552 + MIR SINE MIR 28 209 -53 336 83 0 0 chr3 179865729 179865777 -38171381 + (TG)n Simple_repeat Simple_repeat 1 48 0 304 111 0 0 chr3 179867017 179867062 -38170096 + SATR1 Satellite Satellite 55 99 -371 1208 184 5 14 chr3 179867062 179867274 -38169884 - AluJb SINE Alu -98 214 5 244 298 218 24 chr3 179868121 179868245 -38168913 - MIR SINE MIR -34 228 81 213 163 82 0 chr3 179868686 179868735 -38168423 + GA-rich Low_complexity Low_complexity 2 54 0 627 119 0 67 chr3 179868899 179869033 -38168125 - AluJb SINE Alu -187 125 1 249 227 41 93 chr3 179869828 179869925 -38167233 + MIR SINE MIR 97 188 -74 715 50 30 0 chr3 179870333 179870434 -38166724 - AluSg/x SINE Alu -8 304 201 298 128 0 0 chr3 179870436 179870483 -38166675 - SATR1 Satellite Satellite -346 124 78 1361 98 0 0 chr3 179870631 179870804 -38166354 - AluY SINE Alu -138 173 1 180 97 0 0 chr3 179870807 179870838 -38166320 + (T)n Simple_repeat Simple_repeat 1 31 0 22 35 0 0 chr3 179871150 179871179 -38165979 + AT_rich Low_complexity Low_complexity 1 29 0 453 305 54 20 chr3 179871527 179871730 -38165428 - MIR SINE MIR -48 214 5 383 290 0 11 chr3 179871949 179872042 -38165116 - L2 LINE L2 -43 3270 3179 2178 166 101 21 chr3 179872178 179873936 -38163222 - SATR1 Satellite Satellite 0 1898 1 2416 148 115 1 chr3 179873966 179875620 -38161538 - SATR1 Satellite Satellite -48 1841 1 2135 122 0 10 chr3 179875720 179876016 -38161142 - AluSc SINE Alu -16 293 1 27 0 0 0 chr3 179876258 179876285 -38160873 + AT_rich Low_complexity Low_complexity 1 27 0 275 346 44 39 chr3 179876285 179876467 -38160691 + MER5A DNA MER1_type 7 189 0 275 378 44 15 chr3 179876842 179877046 -38160112 - MIR SINE MIR 0 262 53 2396 74 3 0 chr3 179878130 179878440 -38158718 + AluY SINE Alu 1 311 0 353 327 171 24 chr3 179878494 179878699 -38158459 + MIR SINE MIR 20 254 -8 200 260 143 0 chr3 179878921 179878998 -38158160 + MIR SINE MIR 119 206 -56 202 189 0 0 chr3 179879717 179879754 -38157404 + (TG)n Simple_repeat Simple_repeat 2 38 0 218 313 0 0 chr3 179880017 179880065 -38157093 + MIR SINE MIR 6 53 -209 346 287 157 27 chr3 179881393 179881616 -38155542 + L2 LINE L2 2817 3068 -245 599 243 29 50 chr3 179881962 179882201 -38154957 - HAL1 LINE L1 -861 1646 1413 1297 176 42 0 chr3 179882210 179882472 -38154686 - L1MB3 LINE L1 -3 6180 5908 365 323 92 12 chr3 179882488 179882652 -38154506 + L2 LINE L2 3121 3297 -16 1014 171 84 70 chr3 179883155 179883442 -38153716 - MER58B DNA MER1_type -42 299 9 1241 199 100 65 chr3 179884081 179884482 -38152676 - SATR1 Satellite Satellite -44 426 12 1294 194 246 34 chr3 179884524 179887599 -38149559 - SATR1 Satellite Satellite -53 3727 1 6612 69 11 7 chr3 179887699 179888721 -38148437 - MER11B LTR ERVK -67 1004 1 744 329 128 13 chr3 179888788 179889379 -38147779 - L2 LINE L2 -251 3021 2375 486 49 0 0 chr3 179890213 179890274 -38146884 + (GA)n Simple_repeat Simple_repeat 2 62 0 205 88 29 0 chr3 179892620 179892654 -38144504 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2259 112 3 0 chr3 179893218 179893530 -38143628 - AluSq SINE Alu 0 313 1 245 301 58 73 chr3 179893828 179894223 -38142935 - MLT1J LTR MaLR -33 478 90 560 314 51 72 chr3 179894557 179895936 -38141222 - L1PA15-16 LINE L1 -5289 1573 67 493 302 33 28 chr3 179896040 179896222 -38140936 + MER5A DNA MER1_type 7 189 0 225 0 0 0 chr3 179897807 179897832 -38139326 + (A)n Simple_repeat Simple_repeat 1 25 0 186 133 0 0 chr3 179898060 179898090 -38139068 + (TTCC)n Simple_repeat Simple_repeat 4 33 0 322 352 16 0 chr3 179898090 179898218 -38138940 + CT-rich Low_complexity Low_complexity 2 131 0 783 316 126 50 chr3 179898512 179899384 -38137774 - L2 LINE L2 -512 2802 1865 1366 193 38 4 chr3 179901006 179901244 -38135914 - AluJo SINE Alu -30 282 37 2324 98 3 0 chr3 179901455 179901751 -38135407 + AluSg SINE Alu 1 297 -13 1005 236 67 20 chr3 179901889 179902143 -38135015 - L3 LINE CR1 -570 1007 742 279 274 187 27 chr3 179902315 179902534 -38134624 - MLT1K LTR MaLR 0 588 335 556 222 37 0 chr3 179902636 179902744 -38134414 + MER81 DNA DNA 1 112 -2 300 328 42 8 chr3 179902888 179903007 -38134151 + MER5A DNA MER1_type 67 189 0 219 295 26 96 chr3 179903173 179903329 -38133829 - L3 LINE CR1 -1229 348 204 541 300 73 24 chr3 179903397 179903644 -38133514 + MIR SINE MIR 2 260 -2 198 230 50 80 chr3 179903623 179903723 -38133435 - L3 LINE CR1 -876 701 605 * 265 376 113 28 chr3 179903920 179904284 -38132874 - L2 LINE L2 -341 2973 2579 1103 198 198 0 chr3 179904293 179904561 -38132597 + Tigger4(Zombi) DNA MER2_type 1 321 -2410 * 1213 156 0 0 chr3 179904557 179904762 -38132396 + Tigger4(Zombi) DNA MER2_type 2527 2731 0 387 344 95 28 chr3 179904795 179905080 -38132078 - L2 LINE L2 -787 2527 2224 24 0 0 0 chr3 179905477 179905501 -38131657 + AT_rich Low_complexity Low_complexity 1 24 0 266 299 0 0 chr3 179905950 179906017 -38131141 - L2 LINE L2 -1 3271 3205 1331 187 19 6 chr3 179907237 179907552 -38129606 + L1MC3 LINE L1 7467 7785 0 1891 131 0 3 chr3 179907950 179908264 -38128894 + AluSx SINE Alu 1 313 0 3577 164 81 32 chr3 179908326 179909163 -38127995 - L1MD2 LINE L1 -197 6162 5285 321 218 0 109 chr3 179909163 179909264 -38127894 + L1MC4 LINE L1 6614 6703 -1339 * 330 226 60 0 chr3 179909189 179909273 -38127885 - L1MC4 LINE L1 -1339 6703 6615 3592 238 59 71 chr3 179909292 179910222 -38126936 - L1MD2 LINE L1 -885 5261 4362 1932 188 81 5 chr3 179910222 179910616 -38126542 - MSTB LTR MaLR -2 424 1 3592 238 59 71 chr3 179910616 179911459 -38125699 - L1MD2 LINE L1 -1784 4362 3510 703 32 0 11 chr3 179911470 179911563 -38125595 - AluSp/q SINE Alu -7 306 215 458 232 93 122 chr3 179911669 179912023 -38125135 - MER77 LTR ERV1 -221 384 41 314 222 7 131 chr3 179912394 179912547 -38124611 - Charlie8 DNA MER1_type -1912 505 372 237 276 46 23 chr3 179912652 179912739 -38124419 - Charlie8 DNA MER1_type -2143 274 186 1594 178 3 3 chr3 179912798 179913084 -38124074 - L1MB5 LINE L1 -8 6166 5881 417 225 95 12 chr3 179915056 179915225 -38121933 - MER113 DNA MER1_type? -333 188 6 732 231 0 46 chr3 179915333 179915506 -38121652 + FRAM SINE Alu 1 165 -1 30 45 0 0 chr3 179915822 179915866 -38121292 + AT_rich Low_complexity Low_complexity 1 44 0 1089 232 14 0 chr3 179916070 179916290 -38120868 + MER58A DNA MER1_type 1 223 -1 2082 97 59 0 chr3 179916314 179916602 -38120556 - AluSc SINE Alu -4 305 1 21 0 0 0 chr3 179916678 179916699 -38120459 + AT_rich Low_complexity Low_complexity 1 21 0 651 320 81 47 chr3 179917422 179917865 -38119293 - L3 LINE CR1 -184 1393 936 263 342 17 8 chr3 179918041 179918161 -38118997 - MIR SINE MIR -1 261 141 29 47 0 0 chr3 179918260 179918303 -38118855 + AT_rich Low_complexity Low_complexity 1 43 0 338 311 75 9 chr3 179918409 179918515 -38118643 - MIR SINE MIR -142 120 8 220 349 119 18 chr3 179918561 179918839 -38118319 - L3 LINE CR1 -868 709 404 249 319 17 17 chr3 179918871 179918987 -38118171 + L1ME4a LINE L1 5548 5663 -458 270 187 104 60 chr3 179919134 179919268 -38117890 + L1ME4a LINE L1 5817 5956 -165 271 239 0 109 chr3 179919928 179920020 -38117138 + MER91B DNA MER1_type 6 87 -103 238 320 64 47 chr3 179920596 179920768 -38116390 - L2 LINE L2 -1388 1926 1752 21 36 0 0 chr3 179920924 179920952 -38116206 + AT_rich Low_complexity Low_complexity 1 28 0 2243 60 18 7 chr3 179921347 179921663 -38115495 + AluY SINE Alu 1 319 0 870 251 105 3 chr3 179922281 179922828 -38114330 + L1M4 LINE L1 3510 4145 -2001 23 92 0 0 chr3 179922828 179922893 -38114265 + AT_rich Low_complexity Low_complexity 1 65 0 1952 230 134 22 chr3 179922938 179923576 -38113582 + L1M4 LINE L1 4388 4953 -1193 2593 131 41 5 chr3 179923576 179923989 -38113169 + MSTA LTR MaLR 1 428 0 9426 164 24 1 chr3 179923989 179925603 -38111555 + MSTA-int LTR MaLR 1 1651 0 2464 139 46 7 chr3 179925603 179926012 -38111146 + MSTA LTR MaLR 3 428 0 1952 230 134 22 chr3 179926012 179926097 -38111061 + L1M4 LINE L1 4952 5194 -952 1785 240 91 16 chr3 179926090 179926818 -38110340 + L1MDb LINE L1 3 897 -5512 * 1114 251 59 65 chr3 179926839 179926992 -38110166 + L1M4 LINE L1 2944 3096 -3050 1573 110 20 0 chr3 179926992 179927247 -38109911 + L1MA2 LINE L1 6045 6304 0 1114 251 59 65 chr3 179927247 179927666 -38109492 + L1M4 LINE L1 3096 3513 -2633 849 82 0 9 chr3 179927667 179927777 -38109381 + AluSp SINE Alu 1 109 -204 532 231 15 0 chr3 180027777 180027911 -38009247 + L1M4 LINE L1 3544 3679 -2467 673 158 16 0 chr3 180027922 180028049 -38009109 + L1PB2 LINE L1 6021 6149 -2 248 364 93 7 chr3 180028090 180028230 -38008928 + MIR3 SINE MIR 57 208 0 1754 85 67 48 chr3 180029135 180029405 -38007753 - AluY SINE Alu 0 311 37 31 26 0 0 chr3 180029993 180030031 -38007127 + AT_rich Low_complexity Low_complexity 1 38 0 846 196 42 6 chr3 180030188 180030356 -38006802 + MER96 DNA MER1_type 1 174 -1 824 167 8 0 chr3 180030525 180030657 -38006501 + FLAM_A SINE Alu 1 133 0 23 54 0 0 chr3 180030694 180030731 -38006427 + AT_rich Low_complexity Low_complexity 1 37 0 1856 121 48 3 chr3 180031178 180031467 -38005691 - AluSx SINE Alu -10 302 1 1983 97 10 13 chr3 180031575 180031873 -38005285 - L1PA10 LINE L1 -10 6158 5862 201 244 0 0 chr3 180032535 180032580 -38004578 + CT-rich Low_complexity Low_complexity 2 46 0 3943 207 93 24 chr3 180032630 180032752 -38004406 + L1MC3 LINE L1 5948 6060 -1725 1701 194 101 32 chr3 180032752 180033189 -38003969 - MLT1C LTR MaLR 0 467 1 3943 207 93 24 chr3 180033189 180034131 -38003027 + L1MC3 LINE L1 6060 7085 -700 252 333 0 10 chr3 180034131 180034233 -38002925 + MLT1F1 LTR MaLR 24 124 -443 754 187 19 19 chr3 180034234 180034389 -38002769 + L1MC3 LINE L1 7191 7345 -440 211 317 242 0 chr3 180034551 180034712 -38002446 - MIR SINE MIR -61 201 2 21 57 0 0 chr3 180034746 180034781 -38002377 + AT_rich Low_complexity Low_complexity 1 35 0 548 240 128 6 chr3 180034819 180034998 -38002160 - MER82 DNA MER2_type -5 648 448 469 301 27 14 chr3 180035035 180035181 -38001977 + MIR SINE MIR 3 150 -112 375 253 0 0 chr3 180035301 180035376 -38001782 - MER82 DNA MER2_type -557 96 22 1711 159 6 29 chr3 180035393 180035707 -38001451 - AluJo SINE Alu 0 312 6 209 195 0 0 chr3 180037678 180037719 -37999439 + GA-rich Low_complexity Low_complexity 2 42 0 207 139 0 0 chr3 180038148 180038184 -37998974 + (TA)n Simple_repeat Simple_repeat 2 37 0 30 45 0 0 chr3 180038373 180038417 -37998741 + AT_rich Low_complexity Low_complexity 1 44 0 2208 209 22 11 chr3 180039028 180039491 -37997667 - MER70A LTR ERVL -4 468 1 204 97 0 0 chr3 180040186 180040217 -37996941 + (CA)n Simple_repeat Simple_repeat 1 31 0 628 268 36 36 chr3 180041250 180041470 -37995688 - MIR SINE MIR -41 221 2 360 0 0 0 chr3 180042204 180042244 -37994914 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 180 77 0 0 chr3 180042430 180042456 -37994702 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 610 326 83 37 chr3 180042459 180042943 -37994215 - L2 LINE L2 -15 3298 2794 36264 100 13 8 chr3 180042978 180049093 -37988065 - L1PA6 LINE L1 0 6154 11 230 359 82 57 chr3 180049101 180049346 -37987812 - L2 LINE L2 -531 2783 2533 21 0 0 0 chr3 180049601 180049622 -37987536 + AT_rich Low_complexity Low_complexity 1 21 0 2228 111 0 7 chr3 180050067 180050374 -37986784 + AluSc SINE Alu 1 305 -4 23 0 0 0 chr3 180051197 180051220 -37985938 + AT_rich Low_complexity Low_complexity 1 23 0 197 298 0 0 chr3 180053198 180053255 -37983903 - MIR SINE MIR -12 250 194 540 308 36 36 chr3 180053281 180053528 -37983630 + L2 LINE L2 2376 2622 -692 1021 206 12 36 chr3 180053552 180053800 -37983358 + L1MD3 LINE L1 7729 7970 -25 2228 111 3 0 chr3 180053924 180054230 -37982928 - AluSg SINE Alu -3 307 1 229 255 0 0 chr3 180057812 180057859 -37979299 + CT-rich Low_complexity Low_complexity 3 49 0 268 244 12 49 chr3 180058129 180058211 -37978947 - L2 LINE L2 0 3313 3235 182 291 136 19 chr3 180058265 180058368 -37978790 - L2 LINE L2 -19 3294 3180 226 175 0 18 chr3 180059243 180059300 -37977858 + LTR66 LTR ERVL 385 440 -170 30 69 0 0 chr3 180059510 180059568 -37977590 + AT_rich Low_complexity Low_complexity 1 58 0 2352 58 14 3 chr3 180061425 180061719 -37975439 - AluY SINE Alu -14 297 1 221 133 22 22 chr3 180062721 180062766 -37974392 + (TA)n Simple_repeat Simple_repeat 2 46 0 243 0 0 0 chr3 180062778 180062805 -37974353 + (CA)n Simple_repeat Simple_repeat 2 28 0 22 35 0 0 chr3 180063590 180063619 -37973539 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr3 180063949 180063986 -37973172 + AT_rich Low_complexity Low_complexity 1 37 0 183 220 0 0 chr3 180064467 180064517 -37972641 + A-rich Low_complexity Low_complexity 1 50 0 213 213 0 0 chr3 180065380 180065427 -37971731 + (TG)n Simple_repeat Simple_repeat 2 48 0 27 0 0 0 chr3 180066061 180066088 -37971070 + AT_rich Low_complexity Low_complexity 1 27 0 378 0 0 0 chr3 180066352 180066394 -37970764 + (TG)n Simple_repeat Simple_repeat 2 43 0 192 135 0 0 chr3 180067802 180067839 -37969319 + (CCA)n Simple_repeat Simple_repeat 1 37 0 23 33 0 0 chr3 180070688 180070718 -37966440 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr3 180071667 180071697 -37965461 + AT_rich Low_complexity Low_complexity 1 30 0 309 26 0 0 chr3 180072243 180072281 -37964877 + (TG)n Simple_repeat Simple_repeat 2 39 0 330 26 0 0 chr3 180072418 180072457 -37964701 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 213 128 26 0 chr3 180075561 180075600 -37961558 + G-rich Low_complexity Low_complexity 2 41 0 180 0 0 0 chr3 180075632 180075652 -37961506 + (CGG)n Simple_repeat Simple_repeat 3 22 0 797 52 9 0 chr3 180076014 180076129 -37961029 + (TC)n Simple_repeat Simple_repeat 1 116 0 480 364 20 10 chr3 180079555 180079688 -37957470 - L3 LINE CR1 -1 1576 1439 450 67 0 0 chr3 180079688 180079748 -37957410 - L1PA10 LINE L1 -8 6160 6101 480 364 20 10 chr3 180079748 180079809 -37957349 - L3 LINE CR1 -138 1439 1380 998 324 78 16 chr3 180082256 180082887 -37954271 + L2 LINE L2 2635 3312 -1 1294 291 119 28 chr3 180083602 180084139 -37953019 + MLT1E LTR MaLR 8 593 0 31 68 0 0 chr3 180084559 180084618 -37952540 + AT_rich Low_complexity Low_complexity 1 59 0 279 0 0 0 chr3 180085112 180085143 -37952015 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 236 263 188 38 chr3 180088025 180088158 -37949000 + L2 LINE L2 3161 3313 0 1901 158 0 7 chr3 180090001 180090292 -37946866 - AluJb SINE Alu -23 289 1 437 331 119 40 chr3 180091154 180091405 -37945753 + L2 LINE L2 2986 3256 -16 302 125 0 0 chr3 180091590 180091638 -37945520 + L1PA13 LINE L1 6105 6152 -11 29 0 0 0 chr3 180091638 180091667 -37945491 + AT_rich Low_complexity Low_complexity 1 29 0 338 226 61 35 chr3 180091735 180091850 -37945308 - MIR SINE MIR -64 198 81 316 252 159 65 chr3 180092301 180092622 -37944536 - L1ME4a LINE L1 -3 6118 5768 206 309 105 40 chr3 180092935 180093087 -37944071 - MIR SINE MIR -92 170 9 304 290 43 0 chr3 180093129 180093222 -37943936 + MIR SINE MIR 106 202 -60 481 287 60 48 chr3 180094580 180094831 -37942327 - L3b LINE CR1 -102 1481 1228 186 43 0 0 chr3 180095782 180095805 -37941353 + (ATTAG)n Simple_repeat Simple_repeat 3 25 0 394 271 58 116 chr3 180097713 180098019 -37939139 - L2 LINE L2 -728 2586 2313 866 237 18 40 chr3 180098019 180098243 -37938915 - MER20 DNA MER1_type 0 219 1 394 271 58 116 chr3 180098243 180098386 -37938772 - L2 LINE L2 -1001 2313 2163 827 339 60 62 chr3 180098538 180099331 -37937827 - L3 LINE CR1 -202 1375 584 313 289 116 41 chr3 180099522 180099764 -37937394 + L1ME4a LINE L1 5861 6120 -1 2200 88 0 55 chr3 180100231 180100559 -37936599 + AluSq SINE Alu 1 310 -3 2062 141 0 7 chr3 180101943 180102241 -37934917 + AluSx SINE Alu 1 296 -16 2189 120 10 0 chr3 180103059 180103367 -37933791 + AluSx SINE Alu 2 312 0 416 208 9 0 chr3 180104211 180104317 -37932841 + CT-rich Low_complexity Low_complexity 3 109 0 786 189 56 11 chr3 180104855 180105035 -37932123 + MER5A DNA MER1_type 1 188 -1 583 258 114 0 chr3 180105302 180105469 -37931689 + MIR SINE MIR 51 236 -26 510 335 29 6 chr3 180106582 180106752 -37930406 - MIR3 SINE MIR -8 200 27 455 246 64 76 chr3 180106865 180107036 -37930122 - MIR SINE MIR -13 249 81 22 0 0 0 chr3 180107279 180107301 -37929857 + AT_rich Low_complexity Low_complexity 1 22 0 1044 211 41 56 chr3 180107301 180107599 -37929559 - MLT1E LTR MaLR -46 530 262 4745 184 17 24 chr3 180107677 180109092 -37928066 - L1MA7 LINE L1 0 6291 4884 2113 178 30 84 chr3 180109090 180109729 -37927429 + L1MA7 LINE L1 4273 4876 -1270 * 39 38 0 0 chr3 180109795 180109848 -37927310 + AT_rich Low_complexity Low_complexity 1 53 0 43 20 0 0 chr3 180110299 180110349 -37926809 + AT_rich Low_complexity Low_complexity 1 50 0 386 326 155 5 chr3 180110423 180110610 -37926548 - MIR SINE MIR -24 238 24 183 80 0 0 chr3 180112505 180112530 -37924628 + (A)n Simple_repeat Simple_repeat 1 25 0 294 254 82 60 chr3 180112928 180113062 -37924096 - LTR16A LTR ERVL 0 450 314 378 0 0 0 chr3 180113120 180113162 -37923996 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1943 134 0 3 chr3 180113165 180113448 -37923710 - AluSx SINE Alu -30 282 1 633 167 125 75 chr3 180113812 180114117 -37923041 - MER33 DNA MER1_type -4 320 1 1702 217 21 92 chr3 180114471 180115608 -37921550 - L1ME1 LINE L1 -4 6162 4945 2183 99 3 0 chr3 180115608 180115913 -37921245 + AluSx SINE Alu 1 306 0 1702 217 21 92 chr3 180115913 180116026 -37921132 - L1ME1 LINE L1 -1221 4945 5055 1876 148 3 23 chr3 180116026 180116330 -37920828 - AluSx SINE Alu -14 298 1 1702 217 21 92 chr3 180116330 180116425 -37920733 - L1ME1 LINE L1 -1110 5056 4956 286 292 79 0 chr3 180116422 180116511 -37920647 - L1MEc LINE L1 -6211 185 90 * 529 226 20 0 chr3 180118041 180118143 -37919015 + MER5A DNA MER1_type 9 112 -77 215 232 42 63 chr3 180118831 180118926 -37918232 - L2 LINE L2 0 3313 3221 200 265 229 12 chr3 180119000 180119083 -37918075 - L2 LINE L2 -268 3004 2904 371 138 15 0 chr3 180119448 180119513 -37917645 - MER92C LTR ERV1 0 554 489 305 264 64 55 chr3 180119606 180119660 -37917498 - MER92B LTR ERV1 -525 111 59 1861 176 30 28 chr3 180119660 180120023 -37917135 + THE1B LTR MaLR 1 364 0 305 264 64 55 chr3 180120023 180120078 -37917080 - MER92B LTR ERV1 -577 59 1 21 36 0 0 chr3 180120212 180120240 -37916918 + AT_rich Low_complexity Low_complexity 1 28 0 571 244 68 86 chr3 180120645 180120866 -37916292 + MER20 DNA MER1_type 1 217 -2 2065 170 45 47 chr3 180121706 180122152 -37915006 - MER65A LTR ERV1 0 445 1 2252 252 51 23 chr3 180122152 180123293 -37913865 - MER65A-int LTR ERV1 -1 4870 3595 305 82 143 0 chr3 180123284 180123333 -37913825 - MER65A-int LTR ERV1 -939 5392 5337 * 2305 227 70 38 chr3 180123428 180124216 -37912942 - MER65A-int LTR ERV1 -1214 5117 4305 854 239 97 27 chr3 180124264 180124637 -37912521 - MER65A-int LTR ERV1 -1900 3036 2638 645 161 0 35 chr3 180124644 180124787 -37912371 - MER65A-int LTR ERV1 -2730 3868 3731 432 214 20 70 chr3 180124867 180125068 -37912090 - MER65A-int LTR ERV1 -2868 3730 3540 1251 196 18 57 chr3 180125342 180125914 -37911244 - MER65A-int LTR ERV1 -4323 2435 1720 1171 134 0 12 chr3 180126103 180126275 -37910883 - AluSq SINE Alu -143 170 1 3580 205 98 77 chr3 180126278 180126555 -37910603 - MER65A-int LTR ERV1 -2382 2489 2219 1561 160 84 34 chr3 180126555 180126912 -37910246 - THE1C LTR MaLR 0 375 1 3580 205 98 77 chr3 180126912 180129161 -37907997 - MER65A-int LTR ERV1 -2652 2219 11 2028 120 30 142 chr3 180129167 180129668 -37907490 - MER65A LTR ERV1 0 445 1 21 0 0 0 chr3 180129770 180129791 -37907367 + AT_rich Low_complexity Low_complexity 1 21 0 204 204 37 0 chr3 180129792 180129846 -37907312 + T-rich Low_complexity Low_complexity 4 59 0 735 280 39 79 chr3 180130090 180130651 -37906507 - MER39 LTR ERV1 -2 682 1 375 255 94 71 chr3 180130654 180130821 -37906337 - MER102b DNA MER1_type -1111 317 142 2256 101 7 0 chr3 180130821 180131127 -37906031 - AluY SINE Alu -3 308 1 375 255 94 71 chr3 180131127 180131171 -37905987 - MER102b DNA MER1_type -1286 142 101 213 132 0 0 chr3 180131183 180131221 -37905937 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 333 258 53 99 chr3 180131823 180132106 -37905052 - MER65A LTR ERV1 0 445 176 247 297 85 8 chr3 180132250 180132368 -37904790 - MER65B LTR ERV1 -403 128 2 561 247 0 108 chr3 180132382 180132568 -37904590 + MER5B DNA MER1_type 10 175 -3 36 40 0 0 chr3 180132956 180133006 -37904152 + AT_rich Low_complexity Low_complexity 1 50 0 426 109 0 31 chr3 180133021 180133085 -37904073 - MER5A DNA MER1_type -1 188 127 1393 127 5 0 chr3 180133085 180133290 -37903868 + AluSg/x SINE Alu 80 285 -27 562 230 22 7 chr3 180133298 180133433 -37903725 - MER5A DNA MER1_type -52 137 1 276 300 86 0 chr3 180133491 180133561 -37903597 + MIR3 SINE MIR 92 167 -41 367 299 126 18 chr3 180134979 180135146 -37902012 + MIR3 SINE MIR 15 199 -9 628 159 110 48 chr3 180135512 180135657 -37901501 + FRAM SINE Alu 1 154 -22 1321 250 101 104 chr3 180137042 180137482 -37899676 - MER21B LTR ERV1 -130 733 293 1917 128 0 3 chr3 180137482 180137800 -37899358 - AluSc SINE Alu 0 317 1 1321 250 101 104 chr3 180137800 180138070 -37899088 - MER21B LTR ERV1 -570 293 24 22 23 0 45 chr3 180138236 180138257 -37898901 + AT_rich Low_complexity Low_complexity 1 21 -21 469 225 75 0 chr3 180138257 180138377 -37898781 - FLAM_A SINE Alu -3 130 2 22 23 0 45 chr3 180138377 180138399 -37898759 + AT_rich Low_complexity Low_complexity 21 42 0 200 273 41 91 chr3 180139432 180139553 -37897605 - MIR3 SINE MIR -1 207 93 311 277 0 102 chr3 180139579 180139745 -37897413 - L2 LINE L2 0 3313 3165 394 326 136 18 chr3 180139815 180140036 -37897122 - HAL1 LINE L1 -1008 1499 1253 219 260 8 41 chr3 180140331 180140454 -37896704 + T-rich Low_complexity Low_complexity 1 119 0 21 36 0 0 chr3 180140467 180140495 -37896663 + AT_rich Low_complexity Low_complexity 1 28 0 259 218 18 36 chr3 180140500 180140610 -37896548 + T-rich Low_complexity Low_complexity 3 110 0 252 143 0 63 chr3 180141115 180141178 -37895980 + (TTAA)n Simple_repeat Simple_repeat 2 60 0 514 238 61 0 chr3 180141202 180141349 -37895809 + HAL1 LINE L1 1613 1768 -739 255 254 0 0 chr3 180141398 180141461 -37895697 - MIR SINE MIR -42 220 158 197 116 0 23 chr3 180141815 180141858 -37895300 + (CA)n Simple_repeat Simple_repeat 2 43 0 373 293 126 37 chr3 180141858 180141957 -37895201 + HAL1 LINE L1 2078 2167 -340 1685 128 4 4 chr3 180141957 180142214 -37894944 + AluSg SINE Alu 44 300 -10 373 293 126 37 chr3 180142214 180142408 -37894750 + HAL1 LINE L1 2167 2397 -110 231 364 100 21 chr3 180142793 180143032 -37894126 + L2 LINE L2 2378 2635 -679 2156 90 0 0 chr3 180143128 180143406 -37893752 + AluSc SINE Alu 17 294 -15 354 343 48 19 chr3 180143787 180143994 -37893164 - HAL1b LINE L1 -912 436 224 1058 89 17 11 chr3 180144552 180144652 -37892506 + (TTCC)n Simple_repeat Simple_repeat 1 280 0 1058 89 17 11 chr3 180144652 180144831 -37892327 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1483 194 40 11 chr3 180144880 180145182 -37891976 - AluSx SINE Alu 0 433 118 333 93 0 0 chr3 180145182 180145236 -37891922 + (TG)n Simple_repeat Simple_repeat 2 55 0 1483 194 40 11 chr3 180145236 180145357 -37891801 - AluSx SINE Alu -315 118 2 1566 221 59 22 chr3 180145822 180146248 -37890910 - L1MB8 LINE L1 -5 6173 5727 415 352 35 0 chr3 180146524 180146666 -37890492 + L3 LINE CR1 1430 1576 -1 29 0 0 0 chr3 180146969 180146998 -37890160 + AT_rich Low_complexity Low_complexity 1 29 0 858 300 78 38 chr3 180147133 180147607 -37889551 - MLT1D LTR MaLR 0 505 13 1725 34 0 0 chr3 180148840 180149048 -37888110 - L1PA4 LINE L1 -1 6154 5947 3544 50 2 0 chr3 180149056 180149517 -37887641 - L1P LINE L1 -4489 1657 1196 1707 229 122 60 chr3 180150122 180150484 -37886674 + Zaphod DNA AcHobo 150 488 -3543 2347 81 7 0 chr3 180150484 180150793 -37886365 - AluY SINE Alu 0 311 1 1707 229 122 60 chr3 180150793 180151203 -37885955 + Zaphod DNA AcHobo 488 970 -3061 756 262 28 81 chr3 180151221 180151656 -37885502 + Zaphod DNA AcHobo 3618 4029 -2 428 186 8 81 chr3 180151915 180152039 -37885119 + FAM SINE Alu 29 143 -42 228 285 199 7 chr3 180153111 180153262 -37883896 - HAL1b LINE L1 -864 484 305 503 294 84 35 chr3 180153478 180153635 -37883523 + L2 LINE L2 2943 3091 -222 3537 29 0 0 chr3 180153635 180154054 -37883104 - L1PA3 LINE L1 -3 6152 5734 * 11858 179 19 20 chr3 180154052 180156981 -37880177 - L1PA13 LINE L1 -4 6159 3243 503 294 84 35 chr3 180154054 180156981 -37880177 + L2 LINE L2 3091 2746 -567 2096 135 48 25 chr3 180156981 180157337 -37879821 - THE1B LTR MaLR 0 364 1 503 294 84 35 chr3 180157337 180157861 -37879297 + L2 LINE L2 2745 3242 -71 11858 179 19 20 chr3 180157337 180157732 -37879426 - L1PA13 LINE L1 -2920 3243 2849 654 160 0 21 chr3 180158957 180159101 -37878057 + CT-rich Low_complexity Low_complexity 3 143 0 439 225 7 65 chr3 180160124 180160262 -37876896 + Charlie1 DNA MER1_type 32 161 -2600 317 215 13 47 chr3 180160312 180160461 -37876697 - Charlie1 DNA MER1_type -140 2621 2478 2064 122 6 3 chr3 180161264 180161575 -37875583 - AluSx SINE Alu 0 312 1 317 129 0 16 chr3 180163240 180163302 -37873856 + (CAAAA)n Simple_repeat Simple_repeat 5 65 0 270 116 0 0 chr3 180163391 180163434 -37873724 + (CA)n Simple_repeat Simple_repeat 2 44 0 217 290 58 0 chr3 180163875 180163944 -37873214 + MIR3 SINE MIR 107 179 -29 27 49 0 0 chr3 180165177 180165218 -37871940 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chr3 180166167 180166199 -37870959 + AT_rich Low_complexity Low_complexity 1 32 0 180 200 0 0 chr3 180167172 180167217 -37869941 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 898 135 7 7 chr3 180168560 180168708 -37868450 - L1PA16 LINE L1 -13 6153 6006 5218 199 31 9 chr3 180168825 180170757 -37866401 - L1PA16 LINE L1 -161 6005 4031 23 0 0 0 chr3 180170922 180170945 -37866213 + AT_rich Low_complexity Low_complexity 1 23 0 324 301 67 42 chr3 180171268 180171507 -37865651 + L1M4 LINE L1 2874 3118 -3028 809 341 80 8 chr3 180171801 180172188 -37864970 + LTR16A LTR ERVL 26 440 -10 651 248 15 61 chr3 180172668 180172866 -37864292 + AluJo SINE Alu 86 274 -38 826 182 21 5 chr3 180172866 180173259 -37863899 + GA-rich Low_complexity Low_complexity 1 399 0 1346 53 80 0 chr3 180174258 180174446 -37862712 - L1MA1 LINE L1 0 6302 6100 513 277 66 47 chr3 180174822 180175035 -37862123 - MIR SINE MIR 0 262 46 28 29 0 0 chr3 180175469 180175504 -37861654 + AT_rich Low_complexity Low_complexity 1 35 0 2165 219 51 42 chr3 180176473 180177022 -37860136 - MLT2B3 LTR ERVL 0 554 1 3329 126 2 23 chr3 180177091 180177188 -37859970 - MER75 DNA T2_type 0 514 416 2264 60 3 7 chr3 180177188 180177495 -37859663 - AluY SINE Alu 0 306 1 3329 126 2 23 chr3 180177495 180177921 -37859237 - MER75 DNA T2_type -98 416 1 227 274 32 57 chr3 180178246 180178370 -37858788 + L2 LINE L2 3117 3237 -76 1411 183 7 10 chr3 180180279 180180579 -37856579 + L1MA4 LINE L1 5998 6296 -4 2017 118 0 61 chr3 180180600 180180913 -37856245 + AluSx SINE Alu 3 296 -16 2727 3 0 0 chr3 180180913 180181210 -37855948 + AluYa5 SINE Alu 1 298 -13 27 73 0 0 chr3 180184612 180184667 -37852491 + AT_rich Low_complexity Low_complexity 1 55 0 10810 191 56 24 chr3 180184733 180187058 -37850100 + L1PB4 LINE L1 2667 5083 -1221 1790 174 13 0 chr3 180187058 180187357 -37849801 + AluSx SINE Alu 1 303 -9 10810 191 56 24 chr3 180187357 180187852 -37849306 + L1PB4 LINE L1 5083 5561 -743 272 30 0 0 chr3 180187888 180187921 -37849237 - MADE1 DNA Mariner -18 62 30 1932 162 46 3 chr3 180187930 180188281 -37848877 + L1PB4 LINE L1 5789 6154 -2 1696 110 0 48 chr3 180188291 180188563 -37848595 - L1M1 LINE L1 -516 5786 5528 1287 90 21 0 chr3 180188563 180188749 -37848409 + L1MA1 LINE L1 6111 6302 0 5557 149 21 5 chr3 180188751 180189744 -37847414 + L1MA3 LINE L1 5297 6305 0 342 263 74 11 chr3 180190190 180190285 -37846873 + MIR3 SINE MIR 69 169 -39 254 367 10 0 chr3 180191462 180191560 -37845598 - MIR SINE MIR -111 151 53 200 111 0 67 chr3 180191705 180191750 -37845408 + (TTTTTA)n Simple_repeat Simple_repeat 3 44 0 513 0 0 0 chr3 180192038 180192095 -37845063 + (TA)n Simple_repeat Simple_repeat 1 57 0 24 32 0 0 chr3 180193041 180193072 -37844086 + AT_rich Low_complexity Low_complexity 1 31 0 6445 152 22 17 chr3 180193317 180195160 -37841998 - L1MA3 LINE L1 -5 7719 5887 243 0 0 0 chr3 180195160 180195187 -37841971 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 5547 14 0 0 chr3 180195197 180195824 -37841334 - L1PA2 LINE L1 -7 6148 5522 6445 152 22 17 chr3 180195824 180195902 -37841256 - L1MA3 LINE L1 -1845 5879 5777 4252 165 57 19 chr3 180195884 180195914 -37841244 - L1MA3 LINE L1 -3220 4345 4318 * 13491 32 1 1 chr3 180195914 180198301 -37838857 - L1PA3 LINE L1 -3 6152 3766 4252 165 57 19 chr3 180198301 180198730 -37838428 - L1MA3 LINE L1 -3247 4318 3906 1431 210 30 0 chr3 180198730 180199038 -37838120 - AluJb SINE Alu 0 319 4 4252 165 57 19 chr3 180199038 180200004 -37837154 - L1MA3 LINE L1 -3659 3906 2864 2223 122 127 5 chr3 180200005 180200375 -37836783 + MSTA LTR MaLR 14 428 0 2480 85 14 0 chr3 180200375 180200727 -37836431 - L1MA3 LINE L1 -4694 2871 2515 9548 198 45 18 chr3 180200727 180202643 -37834515 - L1MA3 LINE L1 -5589 1976 9 33 25 0 0 chr3 180202776 180202816 -37834342 + AT_rich Low_complexity Low_complexity 1 40 0 1532 117 142 4 chr3 180204261 180204535 -37832623 + AluSx SINE Alu 1 312 0 181 160 20 20 chr3 180204797 180204847 -37832311 + (CATATA)n Simple_repeat Simple_repeat 2 51 0 1676 111 31 11 chr3 180205281 180205542 -37831616 - L1MA2 LINE L1 -424 5880 5615 971 148 0 6 chr3 180205542 180205708 -37831450 + L1MA2 LINE L1 6137 6304 0 302 298 86 63 chr3 180206469 180206724 -37830434 - MIR SINE MIR 0 262 2 291 237 97 21 chr3 180206834 180206927 -37830231 - MIR3 SINE MIR -9 199 100 187 304 29 14 chr3 180207197 180207266 -37829892 - MIR SINE MIR -10 252 183 2546 169 34 6 chr3 180207435 180207937 -37829221 - L1MA9 LINE L1 -8 6304 5789 262 221 22 39 chr3 180207943 180208124 -37829034 + (TATATG)n Simple_repeat Simple_repeat 1 178 0 239 111 22 22 chr3 180208132 180208177 -37828981 + L1MC4 LINE L1 6658 6702 -1340 1863 161 13 0 chr3 180208188 180208498 -37828660 - MER7A DNA MER2_type -23 323 12 228 346 37 0 chr3 180208536 180208643 -37828515 + (CATATA)n Simple_repeat Simple_repeat 2 112 0 2863 156 16 18 chr3 180208643 180209174 -37827984 - L1MA9 LINE L1 -532 5780 5247 1585 212 39 20 chr3 180209174 180209532 -37827626 - MLT1A1 LTR MaLR 0 365 1 2863 156 16 18 chr3 180209532 180209571 -37827587 - L1MA9 LINE L1 -1065 5247 5209 428 133 25 87 chr3 180209574 180209598 -37827560 - L1M4 LINE L1 -872 5274 5250 1610 156 0 4 chr3 180209598 180209867 -37827291 - AluJb SINE Alu -44 268 1 428 133 25 87 chr3 180209867 180209962 -37827196 - L1M4 LINE L1 -896 5250 5157 477 259 46 15 chr3 180210321 180210452 -37826706 + MER5A DNA MER1_type 49 183 -6 726 267 108 39 chr3 180210962 180211295 -37825863 - L3b LINE CR1 -116 1467 1112 613 326 91 20 chr3 180213130 180213483 -37823675 - L2 LINE L2 -121 3192 2815 50 18 0 0 chr3 180213540 180213597 -37823561 + AT_rich Low_complexity Low_complexity 1 57 0 30 93 0 0 chr3 180213988 180214074 -37823084 + AT_rich Low_complexity Low_complexity 1 86 0 1961 124 0 0 chr3 180214962 180215229 -37821929 + AluSx SINE Alu 1 267 -45 363 328 122 11 chr3 180216126 180216306 -37820852 + MIR SINE MIR 47 246 -16 4893 218 91 31 chr3 180216341 180217099 -37820059 - Charlie1a DNA MER1_type -1348 1413 539 2390 76 0 25 chr3 180217099 180217415 -37819743 - AluY SINE Alu -3 308 1 4893 218 91 31 chr3 180217415 180217989 -37819169 - Charlie1a DNA MER1_type -2222 539 1 22 0 0 0 chr3 180219184 180219206 -37817952 + AT_rich Low_complexity Low_complexity 1 22 0 211 0 88 0 chr3 180219649 180219683 -37817475 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chr3 180220064 180220087 -37817071 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr3 180220960 180220987 -37816171 + AT_rich Low_complexity Low_complexity 1 27 0 2197 167 69 41 chr3 180221515 180221576 -37815582 + MER41B LTR ERV1 113 171 -307 2351 74 0 0 chr3 180221576 180221874 -37815284 + AluY SINE Alu 1 298 -13 2197 167 69 41 chr3 180221874 180222322 -37814836 + MER41B LTR ERV1 171 466 -12 29 28 0 0 chr3 180222951 180222987 -37814171 + AT_rich Low_complexity Low_complexity 1 36 0 1192 196 43 31 chr3 180222991 180223246 -37813912 - AluJo SINE Alu -50 262 5 2168 120 0 0 chr3 180223286 180223577 -37813581 + AluSg SINE Alu 7 297 -13 503 306 17 28 chr3 180223586 180223766 -37813392 - MIR SINE MIR 0 262 85 378 91 0 0 chr3 180223888 180223943 -37813215 + (TG)n Simple_repeat Simple_repeat 2 56 0 1476 185 169 8 chr3 180224340 180224525 -37812633 + MSTA LTR MaLR 1 155 -273 339 25 0 0 chr3 180224525 180224565 -37812593 + (TC)n Simple_repeat Simple_repeat 1 40 0 1476 185 169 8 chr3 180224565 180224746 -37812412 + MSTA LTR MaLR 155 426 -2 278 310 44 25 chr3 180225559 180225717 -37811441 + L2 LINE L2 2601 2761 -553 223 324 28 0 chr3 180226014 180226085 -37811073 + L2 LINE L2 3200 3272 0 1868 128 35 0 chr3 180227120 180227409 -37809749 - AluY SINE Alu -12 299 1 189 0 0 0 chr3 180227468 180227489 -37809669 + (T)n Simple_repeat Simple_repeat 1 21 0 949 187 6 6 chr3 180227632 180227814 -37809344 - AluJo SINE Alu -9 303 122 513 0 0 0 chr3 180228317 180228374 -37808784 + (TA)n Simple_repeat Simple_repeat 1 57 0 27 0 0 0 chr3 180228958 180228985 -37808173 + AT_rich Low_complexity Low_complexity 1 27 0 1367 78 0 113 chr3 180229521 180229752 -37807406 - AluY SINE Alu -1 310 106 2165 77 0 0 chr3 180230145 180230417 -37806741 - AluSx SINE Alu -38 274 3 27 0 0 0 chr3 180233212 180233239 -37803919 + AT_rich Low_complexity Low_complexity 1 27 0 816 326 93 21 chr3 180233734 180233858 -37803300 - LTR16A LTR ERVL 0 450 336 2344 59 0 0 chr3 180233858 180234144 -37803014 + AluY SINE Alu 11 296 -15 816 326 93 21 chr3 180234144 180234439 -37802719 - LTR16A LTR ERVL -114 336 1 189 74 0 0 chr3 180234489 180234516 -37802642 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 302 265 81 26 chr3 180235509 180235663 -37801495 + MLT1J LTR MaLR 235 321 -190 313 299 120 12 chr3 180236180 180236347 -37800811 + MIR SINE MIR 63 247 -15 21 0 0 0 chr3 180236509 180236530 -37800628 + AT_rich Low_complexity Low_complexity 1 21 0 1655 207 0 0 chr3 180236751 180237056 -37800102 - AluJb SINE Alu -3 309 5 22 0 0 0 chr3 180237316 180237338 -37799820 + AT_rich Low_complexity Low_complexity 1 22 0 193 337 150 10 chr3 180237964 180238157 -37799001 - MIR SINE MIR -28 234 15 22 35 0 0 chr3 180238159 180238188 -37798970 + AT_rich Low_complexity Low_complexity 1 29 0 2276 125 19 19 chr3 180238206 180238581 -37798577 - THE1C LTR MaLR 0 375 1 306 292 51 51 chr3 180239219 180239356 -37797802 - MLT1J2 LTR MaLR -34 416 280 21 0 0 0 chr3 180239454 180239475 -37797683 + AT_rich Low_complexity Low_complexity 1 21 0 2071 150 25 10 chr3 180239642 180240036 -37797122 - L1MA7 LINE L1 0 6291 5892 3038 27 8 0 chr3 180240092 180240457 -37796701 - L1PA4 LINE L1 -2 6153 5786 2012 34 0 0 chr3 180240457 180240694 -37796464 + L1PA4 LINE L1 5552 5788 -367 * 4509 182 22 10 chr3 180240690 180242134 -37795024 - L1MA7 LINE L1 -384 5907 4446 193 286 29 43 chr3 180242364 180242434 -37794724 + MIR SINE MIR 78 146 -116 433 263 188 27 chr3 180242491 180242715 -37794443 + MIR SINE MIR 3 262 0 1281 99 6 22 chr3 180242798 180242980 -37794178 - AluSg/x SINE Alu -4 308 130 234 0 0 0 chr3 180243323 180243349 -37793809 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 244 244 195 32 chr3 180243562 180243685 -37793473 - MIR SINE MIR -70 192 50 769 368 13 82 chr3 180244285 180244630 -37792528 - AluSx SINE Alu 0 302 1 212 323 52 21 chr3 180245189 180245285 -37791873 + MIR SINE MIR 8 106 -156 212 365 111 16 chr3 180245482 180245608 -37791550 + L2 LINE L2 2898 3035 -237 676 235 115 25 chr3 180246326 180246614 -37790544 - MER52A LTR ERV1 -137 894 633 2340 134 22 3 chr3 180246614 180246971 -37790187 + THE1B LTR MaLR 1 364 0 676 235 115 25 chr3 180246971 180246994 -37790164 - MER52A LTR ERV1 -398 633 275 767 284 8 0 chr3 180247022 180247215 -37789943 - LTR28 LTR ERV1 -554 724 1 240 336 31 16 chr3 180247523 180247651 -37789507 + L1ME LINE L1 5534 5663 -458 1130 224 25 6 chr3 180247831 180248148 -37789010 - MER33 DNA MER1_type 0 324 2 220 255 0 0 chr3 180248665 180248716 -37788442 + L2 LINE L2 3256 3306 -7 25 31 0 0 chr3 180248996 180249028 -37788130 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr3 180249338 180249362 -37787796 + AT_rich Low_complexity Low_complexity 1 24 0 59 65 0 0 chr3 180250853 180250961 -37786197 + AT_rich Low_complexity Low_complexity 1 108 0 186 113 93 0 chr3 180250978 180251075 -37786083 + (TA)n Simple_repeat Simple_repeat 2 107 0 23 68 0 0 chr3 180251085 180251129 -37786029 + AT_rich Low_complexity Low_complexity 1 44 0 204 153 59 24 chr3 180251132 180251217 -37785941 + (TTATA)n Simple_repeat Simple_repeat 1 88 0 1204 327 124 13 chr3 180251269 180252310 -37784848 + L2 LINE L2 2128 3286 -27 216 111 0 0 chr3 180252332 180252368 -37784790 + (GA)n Simple_repeat Simple_repeat 1 36 0 2010 116 37 10 chr3 180254300 180254620 -37782538 - AluSx SINE Alu 0 328 1 24 96 0 0 chr3 180256786 180256859 -37780299 + AT_rich Low_complexity Low_complexity 1 73 0 1023 239 56 14 chr3 180257118 180257473 -37779685 + MER114 LTR ERV 44 413 -235 1353 195 7 55 chr3 180257520 180257828 -37779330 + AluJo SINE Alu 1 293 -9 1391 207 68 58 chr3 180257912 180258270 -37778888 - MLT1A1 LTR MaLR -1 395 1 1022 133 0 12 chr3 180258372 180258545 -37778613 - L1PA13 LINE L1 -4 6159 5989 2738 106 0 0 chr3 180258545 180258932 -37778226 + L1P4 LINE L1 5419 5805 -363 198 0 0 0 chr3 180259070 180259092 -37778066 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 559 221 0 0 chr3 180260277 180260404 -37776754 - L1M1 LINE L1 -809 5494 5368 244 333 20 20 chr3 180260406 180260508 -37776650 - L2 LINE L2 -1001 2313 2212 1717 211 83 53 chr3 180260665 180261135 -37776023 - MLT1D LTR MaLR 0 505 22 875 175 50 0 chr3 180261268 180261428 -37775730 - FAM SINE Alu -7 168 1 1068 191 122 0 chr3 180261456 180261744 -37775414 + MER33 DNA MER1_type 1 323 -1 286 344 11 0 chr3 180262474 180262567 -37774591 - MIR SINE MIR -120 142 49 2413 60 0 25 chr3 180263519 180263865 -37773293 - AluY SINE Alu 0 338 1 1597 205 20 45 chr3 180264536 180264892 -37772266 - MER7A DNA MER2_type 0 346 2 185 161 0 0 chr3 180265233 180265264 -37771894 + L2 LINE L2 3275 3305 -8 538 361 35 9 chr3 180266469 180266699 -37770459 - MIR SINE MIR 0 262 27 23 0 0 0 chr3 180266882 180266905 -37770253 + AT_rich Low_complexity Low_complexity 1 23 0 1929 141 14 3 chr3 180266956 180267253 -37769905 + AluSx SINE Alu 1 300 -12 3042 110 64 90 chr3 180267407 180268017 -37769141 - LTR14B LTR ERVK 0 608 15 27 49 0 0 chr3 180268594 180268635 -37768523 + AT_rich Low_complexity Low_complexity 1 41 0 455 268 22 120 chr3 180269102 180269285 -37767873 - L2 LINE L2 0 3272 3108 2318 83 3 0 chr3 180269820 180270120 -37767038 - AluSp SINE Alu -12 301 1 206 188 38 25 chr3 180270536 180270616 -37766542 + (TATAA)n Simple_repeat Simple_repeat 4 84 0 288 250 19 0 chr3 180270877 180270981 -37766177 + (TA)n Simple_repeat Simple_repeat 1 106 0 235 221 166 117 chr3 180271026 180271171 -37765987 - HAL1 LINE L1 -658 1849 1698 361 179 0 52 chr3 180271183 180271317 -37765841 + (TA)n Simple_repeat Simple_repeat 2 128 0 342 259 122 76 chr3 180271436 180271698 -37765460 - HAL1 LINE L1 -603 1904 1631 371 263 211 37 chr3 180271726 180272053 -37765105 - HAL1 LINE L1 -964 1543 1160 216 0 0 0 chr3 180272308 180272332 -37764826 + (TA)n Simple_repeat Simple_repeat 2 25 0 506 277 105 87 chr3 180272354 180272686 -37764472 + MLT2F LTR ERVL 250 587 -76 747 332 59 12 chr3 180272692 180273035 -37764123 + MER45C DNA AcHobo 1 417 -536 709 238 153 16 chr3 180273049 180273238 -37763920 + MER45C DNA AcHobo 738 952 -1 2147 133 0 19 chr3 180273290 180273606 -37763552 + AluSx SINE Alu 1 310 -2 295 313 66 15 chr3 180273638 180273910 -37763248 - L1M4 LINE L1 -2583 3563 3278 483 197 150 0 chr3 180274150 180274263 -37762895 - L1ME2 LINE L1 -6 6160 6028 4027 143 38 36 chr3 180274276 180275018 -37762140 + MER4E LTR ERV1 37 779 0 4841 189 43 4 chr3 180275022 180276820 -37760338 + L1PA15 LINE L1 4270 6140 -25 55 92 0 0 chr3 180276832 180276985 -37760173 + AT_rich Low_complexity Low_complexity 1 153 0 307 319 104 0 chr3 180277265 180277400 -37759758 + MER20B DNA MER1_type 1 149 -634 314 23 0 23 chr3 180277701 180277745 -37759413 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 872 218 0 0 chr3 180277793 180277949 -37759209 + AluJb SINE Alu 134 289 -23 2261 78 0 4 chr3 180277965 180278284 -37758874 + AluY SINE Alu 2 319 0 2491 30 17 3 chr3 180278322 180278621 -37758537 + AluY SINE Alu 1 303 -8 21 0 0 0 chr3 180279013 180279034 -37758124 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr3 180279659 180279691 -37757467 + AT_rich Low_complexity Low_complexity 1 32 0 26 30 0 0 chr3 180279711 180279744 -37757414 + AT_rich Low_complexity Low_complexity 1 33 0 186 354 62 18 chr3 180280146 180280259 -37756899 + MIR SINE MIR 6 123 -139 2109 115 4 0 chr3 180280465 180280788 -37756370 - AluSx SINE Alu 0 326 3 258 382 0 0 chr3 180280819 180280887 -37756271 + MIR SINE MIR 47 114 -148 26 50 0 0 chr3 180282163 180282203 -37754955 + AT_rich Low_complexity Low_complexity 1 40 0 28 0 0 0 chr3 180282558 180282586 -37754572 + AT_rich Low_complexity Low_complexity 1 28 0 6201 226 21 20 chr3 180282768 180284477 -37752681 + L1M1 LINE L1 18 2039 -5526 2162 109 10 0 chr3 180284477 180284770 -37752388 - AluSp SINE Alu -15 298 3 6201 226 21 20 chr3 180284770 180285189 -37751969 + L1M1 LINE L1 2039 2456 -5109 4861 152 68 37 chr3 180285290 180286063 -37751095 + L1M1 LINE L1 2369 3189 -4376 1963 155 0 10 chr3 180286063 180286366 -37750792 + AluSx SINE Alu 1 300 -12 4861 152 68 37 chr3 180286366 180286720 -37750438 + L1M1 LINE L1 3189 3531 -4034 2661 40 4 0 chr3 180287264 180287645 -37749513 - L1PA5 LINE L1 -720 5434 5053 5658 60 11 0 chr3 180287646 180288363 -37748795 + L1PA5 LINE L1 5430 6154 0 26 30 0 0 chr3 180289088 180289121 -37748037 + AT_rich Low_complexity Low_complexity 1 33 0 24 77 0 0 chr3 180289243 180289295 -37747863 + AT_rich Low_complexity Low_complexity 1 52 0 13798 213 78 16 chr3 180289876 180292306 -37744852 + L1P4 LINE L1 897 3174 -3638 2256 135 28 22 chr3 180292306 180292668 -37744490 + THE1B LTR MaLR 1 364 0 13798 213 78 16 chr3 180292668 180295193 -37741965 + L1P4 LINE L1 3174 6210 -602 338 299 59 9 chr3 180295381 180295602 -37741556 - L1MC3 LINE L1 -1611 6174 5943 * 506 176 94 94 chr3 180295600 180295856 -37741302 - L1MC3 LINE L1 -824 5520 5265 616 229 72 30 chr3 180295870 180296106 -37741052 - L1MC3 LINE L1 -923 5223 4978 * 2580 211 75 8 chr3 180296091 180296734 -37740424 - L1MCb LINE L1 -4849 1196 511 282 69 155 0 chr3 180296737 180296795 -37740363 - MER34B LTR ERV1 -67 498 432 268 127 36 0 chr3 180296799 180296854 -37740304 + (TA)n Simple_repeat Simple_repeat 1 57 0 331 217 11 33 chr3 180296856 180296948 -37740210 + L1MC4 LINE L1 6614 6703 -1339 2541 160 6 36 chr3 180296954 180297422 -37739736 - MER34B LTR ERV1 -109 456 3 371 313 28 11 chr3 180297429 180297605 -37739553 - L1MC3 LINE L1 -2465 3681 3503 363 23 0 0 chr3 180297697 180297741 -37739417 + (TC)n Simple_repeat Simple_repeat 1 44 0 232 232 48 40 chr3 180297756 180297881 -37739277 - L1MC3 LINE L1 -2910 3236 3111 251 172 138 0 chr3 180297942 180298000 -37739158 + MER57A LTR ERV1 5 70 -333 1063 236 107 0 chr3 180298259 180298501 -37738657 - AluJo SINE Alu -32 280 13 283 320 122 0 chr3 180298602 180298749 -37738409 + MIR SINE MIR 90 254 -8 825 186 25 25 chr3 180300517 180300678 -37736480 + AluJo SINE Alu 120 280 -32 198 0 0 0 chr3 180300680 180300702 -37736456 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 2035 58 4 0 chr3 180300741 180300999 -37736159 - L1PA5 LINE L1 -5 6149 5891 406 200 25 50 chr3 180301134 180301254 -37735904 + MER31-int LTR ERV1 3630 3746 -1190 8665 62 1 1 chr3 180301780 180303442 -37733716 + L1PA5 LINE L1 4328 5988 -166 22 88 0 0 chr3 180303809 180303866 -37733292 + AT_rich Low_complexity Low_complexity 1 57 0 3433 172 31 22 chr3 180304423 180304606 -37732552 + L1MC1 LINE L1 5174 5354 -979 1894 106 0 18 chr3 180304606 180304879 -37732279 + AluSg SINE Alu 33 300 -10 3433 172 31 22 chr3 180304879 180305467 -37731691 + L1MC1 LINE L1 5354 5948 -385 22 0 0 0 chr3 180305894 180305916 -37731242 + AT_rich Low_complexity Low_complexity 1 22 0 254 222 0 32 chr3 180305949 180306012 -37731146 + (TTG)n Simple_repeat Simple_repeat 2 62 0 1912 105 0 16 chr3 180306488 180306745 -37730413 + AluY SINE Alu 1 253 -58 232 184 0 66 chr3 180306767 180306843 -37730315 + L1MC4 LINE L1 6632 6702 -1340 224 0 68 51 chr3 180306844 180306903 -37730255 + (TA)n Simple_repeat Simple_repeat 2 61 0 254 267 33 40 chr3 180307402 180307552 -37729606 - MER31-int LTR ERV1 -2142 2794 2646 1116 100 50 0 chr3 180307818 180307891 -37729267 + L1PB1 LINE L1 5708 5776 -375 312 120 0 0 chr3 180307891 180307941 -37729217 + (TG)n Simple_repeat Simple_repeat 2 51 0 1116 100 50 0 chr3 180307941 180308047 -37729111 + L1PB1 LINE L1 5776 5896 -255 3045 201 3 22 chr3 180308169 180308847 -37728311 - L1 LINE L1 -1662 4484 3820 4186 140 72 2 chr3 180308847 180309647 -37727511 - L1PBa LINE L1 -4450 2413 1558 1530 174 53 36 chr3 180309651 180310007 -37727151 + THE1B LTR MaLR 1 362 -2 1668 121 12 4 chr3 180310012 180310268 -37726890 + THE1B-int LTR MaLR 3 260 -1320 * 4298 210 64 3 chr3 180310265 180311166 -37725992 - L1PBa LINE L1 -5907 956 1 1139 160 59 23 chr3 180311870 180312089 -37725069 - MER101B LTR ERV1 -341 229 3 1848 211 64 108 chr3 180312110 180312832 -37724326 + LTR8A LTR ERV1 34 723 -4 596 153 100 53 chr3 180312837 180313007 -37724151 - MER34 LTR ERV1 -57 650 359 308 247 14 0 chr3 180313030 180313103 -37724055 - MER39 LTR ERV1 -20 687 614 641 219 0 7 chr3 180313113 180313250 -37723908 - AluJb SINE Alu -15 297 162 451 192 0 0 chr3 180313250 180313323 -37723835 - AluS SINE Alu -228 75 3 1042 190 26 94 chr3 180313328 180313664 -37723494 - MER39 LTR ERV1 -88 619 176 262 202 60 60 chr3 180313671 180313793 -37723365 - MER34 LTR ERV1 -388 154 8 334 218 142 89 chr3 180313800 180313831 -37723327 - MER39 LTR ERV1 -241 466 438 1330 246 74 43 chr3 180313831 180314456 -37722702 + LTR48B LTR ERV1 1 644 0 334 218 142 89 chr3 180314456 180314720 -37722438 - MER39 LTR ERV1 -269 438 31 1613 149 9 98 chr3 180314771 180314967 -37722191 - AluJb SINE Alu -11 301 144 2219 119 0 3 chr3 180314967 180315279 -37721879 - AluSx SINE Alu 0 312 2 1613 149 9 98 chr3 180315279 180315410 -37721748 - AluJb SINE Alu -168 144 3 909 194 39 6 chr3 180317292 180317472 -37719686 - MLT1A1 LTR MaLR 0 365 180 245 200 37 15 chr3 180317626 180317735 -37719423 - MER34 LTR ERV1 -12 738 449 22 0 0 0 chr3 180318268 180318290 -37718868 + AT_rich Low_complexity Low_complexity 1 22 0 210 250 125 0 chr3 180318533 180318589 -37718569 + L2 LINE L2 3205 3267 -5 25 51 0 0 chr3 180318654 180318693 -37718465 + AT_rich Low_complexity Low_complexity 1 39 0 401 268 41 8 chr3 180318708 180318831 -37718327 - MER94 DNA DNA 0 134 8 2455 150 83 17 chr3 180319141 180319600 -37717558 - LTR29 LTR ERV1 -2 620 132 322 277 0 20 chr3 180319933 180320034 -37717124 + MLT1I LTR MaLR 309 407 -2 226 319 83 13 chr3 180320297 180320454 -37716704 + MIR SINE MIR 66 233 -29 407 101 0 135 chr3 180320556 180320645 -37716513 + AluJ/FRAM SINE Alu 219 295 -7 21 36 0 0 chr3 180320648 180320676 -37716482 + AT_rich Low_complexity Low_complexity 1 28 0 334 306 75 7 chr3 180320719 180320868 -37716290 - MIR SINE MIR -66 142 5 824 241 142 119 chr3 180321172 180321769 -37715389 + MER77 LTR ERV1 98 586 -19 2402 104 0 0 chr3 180321828 180322137 -37715021 - AluSg SINE Alu -1 309 1 886 175 48 16 chr3 180322335 180322524 -37714634 + L1PBa LINE L1 6 200 -6663 12269 141 86 14 chr3 180322524 180325500 -37711658 + L1PBa LINE L1 634 3819 -3043 1008 142 18 0 chr3 180325503 180325672 -37711486 + L1PB1 LINE L1 5979 6150 -1 242 281 0 0 chr3 180325955 180326012 -37711146 - MER63 DNA MER1_type -122 714 32 26 30 0 0 chr3 180326435 180326468 -37710690 + AT_rich Low_complexity Low_complexity 1 33 0 2222 171 59 16 chr3 180326646 180327090 -37710068 - LTR29 LTR ERV1 0 622 160 221 138 35 55 chr3 180327225 180327370 -37709788 + (TA)n Simple_repeat Simple_repeat 2 143 0 243 0 0 0 chr3 180327370 180327397 -37709761 + (GA)n Simple_repeat Simple_repeat 2 28 0 225 234 0 0 chr3 180327400 180327447 -37709711 + L2 LINE L2 3223 3269 -3 837 165 35 0 chr3 180327556 180327737 -37709421 - MER41A LTR ERV1 0 554 348 447 132 0 0 chr3 180327737 180327813 -37709345 + L1PBa LINE L1 119 194 -6669 9117 126 86 4 chr3 180327817 180329417 -37707741 + L1PBa LINE L1 1117 2847 -4016 2254 212 30 11 chr3 180329442 180329797 -37707361 + L1 LINE L1 4040 4410 -2452 198 0 0 0 chr3 180329797 180329819 -37707339 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 2254 212 30 11 chr3 180329819 180330005 -37707153 + L1 LINE L1 4410 4591 -2271 2040 240 75 55 chr3 180380535 180382301 -37654857 - L1MCb LINE L1 -4278 2467 455 1404 185 60 31 chr3 180382362 180382713 -37654445 - L1MB1 LINE L1 -12 6156 5796 1187 273 70 5 chr3 180382820 180383204 -37653954 - L1MCb LINE L1 -5932 632 224 250 324 22 16 chr3 180383223 180383479 -37653679 + L1MEc LINE L1 1370 1618 -4924 21 0 0 0 chr3 180383545 180383566 -37653592 + AT_rich Low_complexity Low_complexity 1 21 0 18002 46 57 3 chr3 180383794 180386150 -37651008 - L1P LINE L1 -3100 3046 564 687 349 52 9 chr3 180386263 180386607 -37650551 + L2 LINE L2 2406 2764 -550 496 259 38 8 chr3 180386610 180386741 -37650417 + MLT1G1 LTR MaLR 5 139 -456 528 260 264 47 chr3 180386796 180387092 -37650066 + MLT1G1 LTR MaLR 230 589 -6 404 297 29 7 chr3 180387099 180387237 -37649921 + MLT1G1-int LTR MaLR 2 142 -1229 366 346 6 6 chr3 180387343 180387505 -37649653 + MLT1G1-int LTR MaLR 417 578 -793 237 200 100 115 chr3 180388454 180388517 -37648641 + MLT1K LTR MaLR 1 63 -532 1377 209 19 16 chr3 180388517 180388544 -37648614 - AluJo SINE Alu -4 308 283 708 74 0 0 chr3 180388544 180388639 -37648519 + (TTCC)n Simple_repeat Simple_repeat 4 98 0 1377 209 19 16 chr3 180388639 180388918 -37648240 - AluJo SINE Alu -29 283 1 237 200 100 115 chr3 180388918 180388984 -37648174 + MLT1K LTR MaLR 63 128 -467 2973 58 3 0 chr3 180389308 180389690 -37647468 - L1P LINE L1 -978 5168 4786 5318 39 2 0 chr3 180389690 180390327 -37646831 + L1PA4 LINE L1 5518 6155 0 364 314 10 0 chr3 180390335 180390437 -37646721 + L2 LINE L2 3210 3312 -1 1609 196 3 0 chr3 180390785 180391070 -37646088 - AluSg SINE Alu -24 286 1 396 324 22 7 chr3 180391180 180391316 -37645842 + MLT1K LTR MaLR 198 335 -253 44 35 0 0 chr3 180391401 180391459 -37645699 + AT_rich Low_complexity Low_complexity 1 58 0 281 293 151 9 chr3 180391670 180391776 -37645382 + L2 LINE L2 3193 3313 0 948 187 8 38 chr3 180392272 180392539 -37644619 + L1PA2 LINE L1 5882 6140 -15 783 290 94 82 chr3 180392616 180393127 -37644031 - MLT1F LTR MaLR -22 520 4 24 32 0 0 chr3 180393215 180393246 -37643912 + AT_rich Low_complexity Low_complexity 1 31 0 1848 114 23 58 chr3 180393293 180393601 -37643557 + AluSg SINE Alu 1 297 -13 295 217 29 0 chr3 180393918 180393987 -37643171 + CT-rich Low_complexity Low_complexity 3 73 0 188 286 33 22 chr3 180394597 180394688 -37642470 + MIR SINE MIR 101 192 -70 30 0 0 0 chr3 180394823 180394853 -37642305 + AT_rich Low_complexity Low_complexity 1 30 0 9023 52 0 5 chr3 180395178 180396341 -37640817 - L1P LINE L1 -4101 2045 889 26756 35 1 1 chr3 180396733 180400771 -37636387 + L1PA3 LINE L1 2109 6146 -9 31 0 0 0 chr3 180400771 180400802 -37636356 + AT_rich Low_complexity Low_complexity 1 31 0 3008 197 37 37 chr3 180401213 180401923 -37635235 - MER67C LTR ERV1 0 710 1 26 30 0 0 chr3 180403859 180403892 -37633266 + AT_rich Low_complexity Low_complexity 1 33 0 802 233 51 0 chr3 180404221 180404397 -37632761 - MER5A DNA MER1_type -2 187 3 22 56 0 0 chr3 180404809 180404845 -37632313 + AT_rich Low_complexity Low_complexity 1 36 0 223 318 30 0 chr3 180405802 180405868 -37631290 - MIR SINE MIR -106 156 89 1442 271 42 84 chr3 180406830 180407872 -37629286 - L2 LINE L2 -18 3295 2304 321 254 30 0 chr3 180407896 180407963 -37629195 + MLT2F LTR ERVL 180 248 -415 22 80 0 0 chr3 180408244 180408294 -37628864 + GC_rich Low_complexity Low_complexity 1 50 0 30 69 0 0 chr3 180408785 180408843 -37628315 + AT_rich Low_complexity Low_complexity 1 58 0 1773 152 54 38 chr3 180410097 180410466 -37626692 - THE1C LTR MaLR 0 375 1 22 0 0 0 chr3 180411211 180411233 -37625925 + AT_rich Low_complexity Low_complexity 1 22 0 613 144 114 8 chr3 180411291 180411423 -37625735 - L1MA4A LINE L1 -4 6299 6154 642 299 57 0 chr3 180411635 180411846 -37625312 + MER58A DNA MER1_type 2 224 0 274 271 14 0 chr3 180412477 180412547 -37624611 + (CATATA)n Simple_repeat Simple_repeat 1 71 0 342 0 0 0 chr3 180414572 180414610 -37622548 + (TG)n Simple_repeat Simple_repeat 1 38 0 222 37 0 0 chr3 180414609 180414636 -37622522 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 562 214 320 0 chr3 180415480 180415658 -37621500 + MIR SINE MIR 7 241 -21 434 228 147 15 chr3 180416240 180416376 -37620782 + L2 LINE L2 3160 3313 0 211 349 169 18 chr3 180418329 180418495 -37618663 + L2 LINE L2 2880 3070 -243 1523 195 6 25 chr3 180418782 180419100 -37618058 - AluJb SINE Alu 0 312 1 1076 246 85 37 chr3 180419127 180419537 -37617621 + MLT1L LTR MaLR 184 613 -2 384 202 60 24 chr3 180420081 180420165 -37616993 + MLT1E1 LTR MaLR 1 87 -567 949 273 20 4 chr3 180420270 180420523 -37616635 + MLT1E3 LTR MaLR 368 624 0 186 279 0 87 chr3 180420592 180420696 -37616462 + L2 LINE L2 2994 3088 -184 1637 233 44 10 chr3 180421657 180422065 -37615093 + MER95 LTR ERV 10 431 0 931 179 0 0 chr3 180422443 180422599 -37614559 - Tigger7 DNA MER2_type 0 2487 2332 541 146 0 0 chr3 180422716 180422798 -37614360 + MER95 LTR ERV 10 91 -340 246 162 45 99 chr3 180422851 180422962 -37614196 - Tigger7 DNA MER2_type -148 2343 2239 802 189 36 100 chr3 180422968 180423217 -37613941 - MER57A LTR ERV1 -5 398 166 4371 38 4 0 chr3 180423335 180423866 -37613292 + L1PA3 LINE L1 5623 6155 0 322 387 36 33 chr3 180423888 180424309 -37612849 + L1MC2 LINE L1 166 587 -5618 316 248 51 29 chr3 180424886 180425023 -37612135 + L1MC2 LINE L1 1041 1180 -5216 28 61 0 0 chr3 180425639 180425688 -37611470 + AT_rich Low_complexity Low_complexity 1 49 0 358 264 52 44 chr3 180425731 180425981 -37611177 + L1MC2 LINE L1 4525 4776 -1439 2193 123 3 0 chr3 180426173 180426482 -37610676 - AluSx SINE Alu -2 310 1 282 160 0 0 chr3 180427251 180427301 -37609857 + (TA)n Simple_repeat Simple_repeat 2 51 0 3929 191 76 4 chr3 180427313 180428218 -37608940 + L1MC2 LINE L1 5429 6398 -15 2502 88 3 3 chr3 180428280 180428623 -37608535 + L1P LINE L1 3 345 -5801 244 289 39 10 chr3 180428798 180428902 -37608256 + L1ME LINE L1 4913 5019 -1127 909 47 0 0 chr3 180428967 180429107 -37608051 - AluY SINE Alu 0 320 181 384 240 103 33 chr3 180429162 180429438 -37607720 + L1ME LINE L1 5310 5607 -563 799 174 0 0 chr3 180429447 180429579 -37607579 - MLT1A1 LTR MaLR -1 364 233 335 169 0 0 chr3 180429578 180429637 -37607521 - MLT1A1 LTR MaLR -306 59 1 * 226 270 121 65 chr3 180429979 180430640 -37606518 - L1MEc LINE L1 -2396 3819 3106 1444 174 43 33 chr3 180430640 180430939 -37606219 + AluJb SINE Alu 1 302 0 226 270 121 65 chr3 180430939 180431061 -37606097 - L1MEc LINE L1 -3109 3106 2992 227 306 60 38 chr3 180431101 180431284 -37605874 - L1MEc LINE L1 -4492 1904 1718 325 272 19 10 chr3 180431414 180431517 -37605641 - MER57A LTR ERV1 -207 196 93 209 291 12 23 chr3 180431671 180431757 -37605401 + (TATATG)n Simple_repeat Simple_repeat 4 88 0 498 310 74 31 chr3 180431788 180432140 -37605018 + L1 LINE L1 4067 4433 -1713 527 224 112 53 chr3 180432763 180433138 -37604020 + L1MEc LINE L1 1878 2274 -4122 376 242 33 39 chr3 180433879 180434032 -37603126 + L1MC5 LINE L1 7339 7490 -471 30 27 0 0 chr3 180434048 180434085 -37603073 + AT_rich Low_complexity Low_complexity 1 37 0 781 191 31 19 chr3 180434142 180434304 -37602854 - AluJb SINE Alu -85 227 64 21 0 0 0 chr3 180434486 180434507 -37602651 + AT_rich Low_complexity Low_complexity 1 21 0 22 39 0 39 chr3 180434935 180434954 -37602204 + AT_rich Low_complexity Low_complexity 1 19 -30 617 165 0 41 chr3 180434954 180435075 -37602083 - FLAM_C SINE Alu -16 117 2 22 39 0 39 chr3 180435075 180435106 -37602052 + AT_rich Low_complexity Low_complexity 19 49 0 2061 136 3 10 chr3 180435143 180435451 -37601707 - AluSx SINE Alu -6 306 1 21 57 0 0 chr3 180435511 180435546 -37601612 + AT_rich Low_complexity Low_complexity 1 35 0 315 242 68 49 chr3 180435566 180435830 -37601328 - L1M4 LINE L1 -3624 2522 2254 192 40 0 0 chr3 180435888 180435913 -37601245 + (A)n Simple_repeat Simple_repeat 1 25 0 734 204 14 0 chr3 180435921 180436063 -37601095 + AluJo SINE Alu 7 150 -162 812 163 39 6 chr3 180436636 180436814 -37600344 - L1MA3 LINE L1 -5 6300 6117 453 83 0 0 chr3 180436818 180436890 -37600268 - L1M1 LINE L1 -5242 2323 2252 * 1317 104 112 9 chr3 180436888 180437186 -37599972 + L1MA3 LINE L1 5929 6304 0 4809 167 35 29 chr3 180437196 180437694 -37599464 + Tigger1 DNA MER2_type 1465 1973 -445 1462 206 0 36 chr3 180437694 180437995 -37599163 + AluJo SINE Alu 1 290 -12 4809 167 35 29 chr3 180437995 180438443 -37598715 + Tigger1 DNA MER2_type 1973 2417 -1 1610 142 50 0 chr3 180439492 180439752 -37597406 + L1PA15 LINE L1 5886 6158 -7 25 31 0 0 chr3 180440174 180440206 -37596952 + AT_rich Low_complexity Low_complexity 1 32 0 1199 187 3 5 chr3 180441110 180441433 -37595725 + MLT1B LTR MaLR 1 390 0 183 298 260 0 chr3 180442278 180442382 -37594776 + MIR SINE MIR 126 256 -6 1902 189 66 20 chr3 180442483 180442923 -37594235 - MLT1C LTR MaLR 0 467 8 3923 219 64 18 chr3 180443072 180443984 -37593174 - MLT1C-int LTR MaLR -417 954 1 1659 228 66 14 chr3 180443984 180444423 -37592735 - MLT1C LTR MaLR 0 467 6 6348 72 67 0 chr3 180446020 180446861 -37590297 - MER11D LTR ERVK 0 897 1 6133 47 4 7 chr3 180446861 180447634 -37589524 - HERVK11D LTR ERVK 0 7752 6982 375 242 53 23 chr3 180448270 180448402 -37588756 - MIR SINE MIR -41 221 86 290 374 67 39 chr3 180448458 180448712 -37588446 - L2 LINE L2 -2808 506 246 251 332 53 53 chr3 180449728 180449993 -37587165 + MER110-int LTR ERV1 4144 4408 -239 199 298 0 0 chr3 180451419 180451466 -37585692 + MIR3 SINE MIR 112 158 -50 5747 134 28 35 chr3 180451765 180452836 -37584322 - HERVL LTR ERVL -4525 1129 66 2224 102 3 3 chr3 180454120 180454425 -37582733 + AluSx SINE Alu 1 305 -7 333 0 0 0 chr3 180454847 180454884 -37582274 + (CA)n Simple_repeat Simple_repeat 2 38 0 370 207 28 21 chr3 180455288 180455433 -37581725 + A-rich Low_complexity Low_complexity 2 147 0 1004 139 10 30 chr3 180455550 180455751 -37581407 + HERVL LTR ERVL 1443 1639 -4015 2710 65 8 6 chr3 180455765 180456119 -37581039 - MLT2A1 LTR ERVL -89 355 1 1133 93 25 0 chr3 180456732 180456893 -37580265 - L1MA1 LINE L1 -4 6298 6134 240 108 0 0 chr3 180456894 180456931 -37580227 + L1 LINE L1 5164 5200 -946 357 65 0 0 chr3 180457077 180457123 -37580035 + MER11D LTR ERVK 1 46 -851 3641 92 5 36 chr3 180457123 180457739 -37579419 + HERVK11D LTR ERVK 6446 7042 -710 2115 169 83 10 chr3 180460870 180461267 -37575891 + MSTB LTR MaLR 1 426 0 264 77 0 0 chr3 180461589 180461628 -37575530 + (CA)n Simple_repeat Simple_repeat 2 40 0 358 270 78 88 chr3 180463108 180463222 -37573936 + MLT1H LTR MaLR 91 205 -344 2350 97 0 6 chr3 180463222 180463533 -37573625 + AluSq SINE Alu 1 309 -4 358 270 78 88 chr3 180463533 180463737 -37573421 + MLT1H LTR MaLR 205 406 -143 277 281 146 35 chr3 180464452 180464623 -37572535 - MIR SINE MIR -37 225 36 200 182 0 0 chr3 180464649 180464682 -37572476 + (CAA)n Simple_repeat Simple_repeat 1 33 0 1127 208 173 66 chr3 180466117 180466573 -37570585 + MLT1D LTR MaLR 1 505 0 1460 262 35 21 chr3 180467016 180467532 -37569626 - L1ME LINE L1 -355 6045 5523 335 279 90 59 chr3 180467502 180468234 -37568924 - L1ME LINE L1 -4240 2143 1082 * 499 184 31 0 chr3 180468245 180468343 -37568815 - LTR52 LTR ERVL -153 268 168 1248 121 14 29 chr3 180468483 180468690 -37568468 + THE1C LTR MaLR 170 373 -2 2054 134 0 0 chr3 180468748 180469046 -37568112 + AluSx SINE Alu 1 298 -14 336 250 153 62 chr3 180469329 180469505 -37567653 + MLT1J LTR MaLR 71 262 -249 297 208 13 52 chr3 180469569 180469646 -37567512 + MLT1J LTR MaLR 395 468 -43 236 299 0 11 chr3 180469884 180469971 -37567187 + (TATATG)n Simple_repeat Simple_repeat 2 87 0 312 91 0 0 chr3 180471622 180471666 -37565492 + (T)n Simple_repeat Simple_repeat 1 44 0 216 0 0 0 chr3 180471715 180471739 -37565419 + (A)n Simple_repeat Simple_repeat 1 24 0 346 248 0 48 chr3 180471961 180472086 -37565072 + GA-rich Low_complexity Low_complexity 2 120 0 312 120 0 0 chr3 180472383 180472433 -37564725 + (TG)n Simple_repeat Simple_repeat 2 51 0 24 0 0 0 chr3 180472661 180472685 -37564473 + AT_rich Low_complexity Low_complexity 1 24 0 1108 210 44 47 chr3 180473050 180473087 -37564071 - Charlie1a DNA MER1_type -2430 331 295 2318 100 3 0 chr3 180473087 180473388 -37563770 + AluSp SINE Alu 1 302 -11 1108 210 44 47 chr3 180473388 180473669 -37563489 - Charlie1a DNA MER1_type -2466 295 14 240 361 62 36 chr3 180473681 180473875 -37563283 + L3 LINE CR1 1044 1242 -335 197 329 13 13 chr3 180474069 180474148 -37563010 + L3 LINE CR1 1497 1575 -2 2320 92 3 3 chr3 180474423 180474727 -37562431 - AluSp SINE Alu -9 304 1 256 241 161 45 chr3 180474890 180475002 -37562156 + L2 LINE L2 3186 3310 -3 2420 81 0 0 chr3 180475400 180475697 -37561461 + AluY SINE Alu 1 297 -14 292 304 33 0 chr3 180476381 180476473 -37560685 - MIR3 SINE MIR -7 201 107 305 347 137 11 chr3 180476720 180476910 -37560248 + MIR SINE MIR 49 262 0 271 256 23 23 chr3 180477371 180477457 -37559701 + MIR SINE MIR 118 203 -59 344 289 47 27 chr3 180477889 180478038 -37559120 - L1ME4a LINE L1 -294 5827 5676 2485 66 10 0 chr3 180478043 180478344 -37558814 - AluY SINE Alu -7 304 1 197 360 158 0 chr3 180478472 180478611 -37558547 - MIR3 SINE MIR -1 207 47 2475 79 0 0 chr3 180479105 180479409 -37557749 - AluY SINE Alu -7 304 1 21 0 0 0 chr3 180480859 180480880 -37556278 + AT_rich Low_complexity Low_complexity 1 21 0 221 134 45 30 chr3 180481003 180481070 -37556088 + (TA)n Simple_repeat Simple_repeat 1 68 0 611 203 71 44 chr3 180481248 180481430 -37555728 + MER20 DNA MER1_type 29 215 -4 522 106 0 12 chr3 180481734 180481819 -37555339 - MSTA LTR MaLR -344 84 1 260 246 0 18 chr3 180481956 180482013 -37555145 - L2 LINE L2 -17 3296 3241 28 0 0 0 chr3 180482120 180482148 -37555010 + AT_rich Low_complexity Low_complexity 1 28 0 1823 48 13 17 chr3 180482985 180483215 -37553943 + AluY SINE Alu 69 297 -14 2164 105 3 13 chr3 180483600 180483913 -37553245 + AluSg SINE Alu 1 310 0 1269 175 4 56 chr3 180485658 180485892 -37551266 - AluJb SINE Alu -64 248 27 276 221 15 0 chr3 180486218 180486286 -37550872 + MER116 DNA Mariner 8 76 -4 784 242 16 0 chr3 180486559 180486745 -37550413 - MER58B DNA MER1_type 0 341 153 194 91 30 0 chr3 180486827 180486860 -37550298 + (TA)n Simple_repeat Simple_repeat 1 34 0 24 77 0 0 chr3 180487528 180487580 -37549578 + AT_rich Low_complexity Low_complexity 1 52 0 431 206 106 62 chr3 180488843 180489003 -37548155 + MLT2D LTR ERVL 269 414 0 1958 91 53 4 chr3 180489023 180489288 -37547870 - AluSx SINE Alu -24 288 11 251 327 79 36 chr3 180489300 180489465 -37547693 - MIR SINE MIR -71 191 20 2257 106 3 3 chr3 180489894 180490206 -37546952 + AluSp SINE Alu 1 312 -1 667 80 0 0 chr3 180490356 180490444 -37546714 - MER4A LTR ERV1 0 664 577 347 376 68 31 chr3 180490641 180490803 -37546355 + MER91A DNA MER1_type 1 168 -28 1927 161 9 0 chr3 180490860 180491265 -37545893 - MLT1A1 LTR MaLR 0 374 1 4390 220 113 22 chr3 180491266 180492455 -37544703 - MLT1A1-int LTR MaLR 0 1735 439 1123 83 7 0 chr3 180492558 180492702 -37544456 + AluSp/q SINE Alu 156 300 -13 23 33 0 0 chr3 180492722 180492752 -37544406 + AT_rich Low_complexity Low_complexity 1 30 0 232 209 17 43 chr3 180492806 180492921 -37544237 + L1MEc LINE L1 2155 2266 -4130 569 236 41 63 chr3 180492971 180493242 -37543916 + L1MEc LINE L1 2383 2647 -3568 519 198 0 0 chr3 180493318 180493409 -37543749 - MLT1E LTR MaLR -444 149 59 473 355 27 77 chr3 180493456 180493794 -37543364 - L2 LINE L2 -2 3270 2950 231 296 13 125 chr3 180493962 180494114 -37543044 + L2 LINE L2 3137 3271 -1 1173 298 139 25 chr3 180494448 180495059 -37542099 + L2 LINE L2 1576 2256 -1058 325 278 11 0 chr3 180495106 180495196 -37541962 + L2 LINE L2 2422 2512 -802 460 285 39 46 chr3 180495198 180495364 -37541794 + L1M4 LINE L1 4568 4733 -1413 1923 175 46 39 chr3 180495364 180495737 -37541421 + MLT2D LTR ERVL 1 379 -35 351 0 0 0 chr3 180495737 180495776 -37541382 + (CA)n Simple_repeat Simple_repeat 2 40 0 1923 175 46 39 chr3 180495776 180495813 -37541345 + MLT2D LTR ERVL 379 414 0 460 285 39 46 chr3 180495813 180495951 -37541207 + L1M4 LINE L1 4733 4870 -1276 345 335 21 32 chr3 180497266 180497454 -37539704 + MER5A DNA MER1_type 3 188 -1 296 300 100 0 chr3 180497730 180497830 -37539328 + MIR SINE MIR 28 137 -125 699 309 0 5 chr3 180498389 180498596 -37538562 + L1M2 LINE L1 222 427 -6422 438 325 12 56 chr3 180498998 180499247 -37537911 + L1M2 LINE L1 727 964 -5885 3326 212 72 4 chr3 180499249 180500358 -37536800 + L1M2 LINE L1 1906 3091 -3757 2280 98 0 0 chr3 180500524 180500821 -37536337 + AluY SINE Alu 1 297 -14 192 343 116 34 chr3 180501326 180501472 -37535686 + MIR3 SINE MIR 28 185 -23 1965 112 4 0 chr3 180502744 180503013 -37534145 + AluSx SINE Alu 39 308 -4 369 276 92 40 chr3 180503700 180503765 -37533393 - MIR SINE MIR 0 262 202 2220 107 3 3 chr3 180503765 180504065 -37533093 - AluSc SINE Alu -9 300 1 369 276 92 40 chr3 180504065 180504151 -37533007 - MIR SINE MIR -60 202 103 1741 170 31 0 chr3 180504233 180504557 -37532601 + THE1B LTR MaLR 1 334 -30 2095 100 13 0 chr3 180504557 180504866 -37532292 - pTR5 LTR ERV1 -2059 379 67 538 257 121 18 chr3 180504980 180505369 -37531789 + L1M4 LINE L1 2132 2560 -3586 589 246 0 8 chr3 180505395 180505517 -37531641 - MER20 DNA MER1_type -50 169 49 199 182 45 11 chr3 180505631 180505719 -37531439 + (TA)n Simple_repeat Simple_repeat 1 91 0 366 182 58 0 chr3 180505741 180505895 -37531263 + (TA)n Simple_repeat Simple_repeat 2 164 0 731 261 58 11 chr3 180505926 180506306 -37530852 + L1M2 LINE L1 3314 3711 -3137 966 200 72 107 chr3 180506391 180506766 -37530392 + MER57A LTR ERV1 42 403 0 308 287 127 4 chr3 180506799 180507074 -37530084 + L1M2 LINE L1 3827 4135 -2713 44 101 0 0 chr3 180507077 180507226 -37529932 + AT_rich Low_complexity Low_complexity 1 149 0 1033 253 89 25 chr3 180507486 180507881 -37529277 + L1ME3A LINE L1 5739 6158 -12 532 171 21 43 chr3 180508095 180508235 -37528923 + L1MD2 LINE L1 5905 6041 -318 1044 86 0 56 chr3 180508236 180508398 -37528760 + AluSg/x SINE Alu 157 309 -3 1423 159 12 92 chr3 180508398 180508744 -37528414 + L1MD2 LINE L1 6034 6351 -8 227 338 0 12 chr3 180509369 180509449 -37527709 + L2 LINE L2 3228 3306 -7 537 294 65 22 chr3 180509520 180509704 -37527454 - MIR SINE MIR -12 250 59 1917 187 13 70 chr3 180509882 180510013 -37527145 + L1M2 LINE L1 4332 4469 -2379 2180 108 0 3 chr3 180510013 180510308 -37526850 + AluSx SINE Alu 18 311 -1 1917 187 13 70 chr3 180510308 180510731 -37526427 + L1M2 LINE L1 4469 4854 -1994 1321 145 0 26 chr3 180510740 180510967 -37526191 + L1PA13 LINE L1 5925 6145 -18 305 24 0 0 chr3 180510967 180511008 -37526150 + L1PA15 LINE L1 6105 6145 -20 297 49 0 0 chr3 180511008 180511049 -37526109 + L1PA15 LINE L1 6105 6145 -20 305 24 0 0 chr3 180511049 180511090 -37526068 + L1PA15 LINE L1 6105 6145 -20 305 24 0 0 chr3 180511090 180511131 -37526027 + L1PA15 LINE L1 6105 6145 -20 297 49 0 0 chr3 180511131 180511172 -37525986 + L1PA15 LINE L1 6105 6145 -20 298 49 0 0 chr3 180511172 180511213 -37525945 + L1PA15 LINE L1 6105 6145 -20 298 49 0 0 chr3 180511213 180511254 -37525904 + L1PA15 LINE L1 6105 6145 -20 358 0 122 0 chr3 180511254 180511295 -37525863 + L1PA15 LINE L1 6105 6148 -17 358 19 96 0 chr3 180511295 180511347 -37525811 + L1PA15 LINE L1 6105 6161 -4 358 0 122 0 chr3 180511347 180511367 -37525791 + L1PA15 LINE L1 6148 6164 -1 * 749 179 60 5 chr3 180511349 180511533 -37525625 + L1M3 LINE L1 4174 4367 -1779 628 114 0 0 chr3 180511539 180511627 -37525531 + AluSg1 SINE Alu 1 88 -221 6195 35 13 15 chr3 180511637 180512418 -37524740 + SVA Other Other 635 1386 0 1709 199 52 7 chr3 180512419 180513055 -37524103 + L1M3 LINE L1 5008 5673 -495 1419 211 23 0 chr3 180513056 180513182 -37523976 + AluJo SINE Alu 1 123 -189 288 0 0 0 chr3 180513182 180513214 -37523944 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1419 211 23 0 chr3 180513214 180513347 -37523811 + AluJo SINE Alu 123 266 -46 532 154 34 27 chr3 180513360 180513509 -37523649 + L1MDa LINE L1 2465 2614 -3926 181 312 11 54 chr3 180513620 180513713 -37523445 - MIR SINE MIR -137 125 37 1656 185 6 26 chr3 180514036 180514349 -37522809 + AluJo SINE Alu 1 307 -5 469 297 41 41 chr3 180514357 180514603 -37522555 - MIR SINE MIR -3 259 14 247 296 38 76 chr3 180515050 180515182 -37521976 + L2 LINE L2 3146 3272 0 2314 102 0 13 chr3 180515248 180515561 -37521597 - AluSq SINE Alu -4 309 1 2425 70 0 13 chr3 180516215 180516527 -37520631 - AluY SINE Alu -3 308 1 2126 131 0 0 chr3 180517305 180517603 -37519555 + AluSx SINE Alu 1 298 -14 21 71 0 0 chr3 180518756 180518798 -37518360 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr3 180518880 180518901 -37518257 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 180520664 180520686 -37516472 + AT_rich Low_complexity Low_complexity 1 22 0 808 150 12 36 chr3 180520686 180520853 -37516305 - L1MB1 LINE L1 0 6168 6006 2129 182 4 68 chr3 180520856 180521311 -37515847 + MSTB LTR MaLR 1 426 0 1195 148 0 0 chr3 180521311 180521527 -37515631 + MSTB-int LTR MaLR 1 216 -1435 2196 171 36 5 chr3 180521527 180521942 -37515216 - MSTA LTR MaLR 0 428 1 5918 208 41 1 chr3 180521942 180523180 -37513978 - MSTA-int LTR MaLR 0 1651 364 263 204 0 0 chr3 180523186 180523235 -37513923 - THE1-int LTR MaLR -498 1082 1034 4140 194 27 19 chr3 180523239 180524114 -37513044 + MSTB-int LTR MaLR 770 1651 0 2206 201 12 7 chr3 180524114 180524538 -37512620 + MSTB LTR MaLR 1 426 0 2158 167 32 71 chr3 180524539 180524607 -37512551 - L1MB1 LINE L1 -161 6007 5938 2419 84 3 0 chr3 180524607 180524918 -37512240 - AluSp SINE Alu -1 312 1 2158 167 32 71 chr3 180524918 180525382 -37511776 - L1MB1 LINE L1 -230 5938 5496 1691 223 35 58 chr3 180525397 180525819 -37511339 + L1 LINE L1 4825 5234 -912 2072 108 0 41 chr3 180525819 180526135 -37511023 - AluY SINE Alu -8 303 1 1691 223 35 58 chr3 180526135 180526250 -37510908 + L1 LINE L1 5234 5350 -796 283 236 47 61 chr3 180526751 180526899 -37510259 - MER103 DNA DNA -1 165 20 23 33 0 0 chr3 180527702 180527732 -37509426 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 180528383 180528404 -37508754 + AT_rich Low_complexity Low_complexity 1 21 0 2122 73 22 60 chr3 180529236 180529550 -37507608 + AluY SINE Alu 1 302 -9 2480 53 3 3 chr3 180530904 180531207 -37505951 - AluY SINE Alu -8 303 1 24 0 0 0 chr3 180531351 180531375 -37505783 + AT_rich Low_complexity Low_complexity 1 24 0 27 49 0 0 chr3 180531849 180531890 -37505268 + AT_rich Low_complexity Low_complexity 1 41 0 1299 246 97 16 chr3 180532388 180532823 -37504335 - Charlie1b DNA MER1_type -53 470 1 6746 202 7 7 chr3 180533341 180534569 -37502589 - L1M1 LINE L1 -6317 1248 22 25 0 0 0 chr3 180534841 180534866 -37502292 + AT_rich Low_complexity Low_complexity 1 25 0 1574 105 0 25 chr3 180536394 180536632 -37500526 - L1PA7 LINE L1 -7 6147 5916 247 222 19 0 chr3 180537533 180537587 -37499571 + HAL1 LINE L1 1577 1631 -876 217 250 16 16 chr3 180538021 180538085 -37499073 + GA-rich Low_complexity Low_complexity 4 67 0 714 82 0 0 chr3 180539263 180539361 -37497797 + (TTCC)n Simple_repeat Simple_repeat 3 100 0 884 103 0 0 chr3 180539361 180539491 -37497667 - AluY SINE Alu -10 301 172 225 0 0 0 chr3 180539563 180539588 -37497570 + (A)n Simple_repeat Simple_repeat 1 25 0 1966 87 59 21 chr3 180539729 180540018 -37497140 - AluSp SINE Alu -13 300 1 219 245 0 0 chr3 180540080 180540129 -37497029 + (CTA)n Simple_repeat Simple_repeat 1 49 0 3750 203 42 12 chr3 180540439 180541201 -37495957 + L1MC1 LINE L1 5494 6278 -55 4304 228 136 13 chr3 180541203 180542471 -37494687 - L1M2 LINE L1 -4356 2853 1430 227 333 78 11 chr3 180542737 180542827 -37494331 - L1M2 LINE L1 -6435 774 679 271 297 20 10 chr3 180542860 180542961 -37494197 - L1M2 LINE L1 -6669 540 439 242 254 48 0 chr3 180542962 180543025 -37494133 + L1MCb LINE L1 66 131 -5914 435 223 75 0 chr3 180543027 180543121 -37494037 - MSTD LTR MaLR -83 313 213 24 0 0 0 chr3 180543304 180543328 -37493830 + AT_rich Low_complexity Low_complexity 1 24 0 935 279 144 30 chr3 180544152 180544547 -37492611 + MLT1D LTR MaLR 2 441 -64 25 0 0 0 chr3 180544741 180544766 -37492392 + AT_rich Low_complexity Low_complexity 1 25 0 216 342 56 56 chr3 180544903 180545064 -37492094 + MER5B DNA MER1_type 1 161 -17 4418 219 38 19 chr3 180545814 180547339 -37489819 + L1PA15 LINE L1 1294 2855 -3942 5287 223 23 9 chr3 180547359 180548650 -37488508 + L1PA15 LINE L1 4036 5344 -1453 4822 169 14 3 chr3 180548654 180550059 -37487099 + L1PA15 LINE L1 5398 6810 -6 246 194 0 0 chr3 180551047 180551109 -37486049 + CT-rich Low_complexity Low_complexity 3 64 0 349 315 25 19 chr3 180551123 180551285 -37485873 + CT-rich Low_complexity Low_complexity 3 165 0 381 273 109 80 chr3 180552338 180552628 -37484530 - L1ME3A LINE L1 -231 5939 5659 2293 91 3 19 chr3 180552628 180552946 -37484212 - AluSp SINE Alu 0 313 1 381 273 109 80 chr3 180552946 180552972 -37484186 - L1ME3A LINE L1 -511 5659 5635 1894 149 3 0 chr3 180552972 180553254 -37483904 - AluSq SINE Alu -30 283 1 381 273 109 80 chr3 180553254 180553533 -37483625 - L1ME3A LINE L1 -535 5635 5326 227 279 82 0 chr3 180553593 180553715 -37483443 - L1ME3A LINE L1 -937 5209 5078 198 0 0 0 chr3 180554074 180554096 -37483062 + (TC)n Simple_repeat Simple_repeat 1 22 0 372 244 92 78 chr3 180554129 180554346 -37482812 - L1ME3A LINE L1 -1538 4608 4389 288 309 113 26 chr3 180554544 180555166 -37481992 - L1ME3A LINE L1 -1980 4166 3491 394 269 78 33 chr3 180555225 180555560 -37481598 - L1ME3A LINE L1 -2789 3357 3008 1985 137 14 0 chr3 180555611 180555903 -37481255 + AluSx SINE Alu 1 296 -16 2390 124 6 11 chr3 180556317 180556681 -37480477 - THE1B LTR MaLR 0 364 3 355 306 109 33 chr3 180557157 180557340 -37479818 + MLT1J LTR MaLR 1 197 -314 8226 239 27 16 chr3 180558175 180560348 -37476810 + L1 LINE L1 2448 4653 -1493 1852 146 31 0 chr3 180560348 180560636 -37476522 + AluSx SINE Alu 1 297 -15 8226 239 27 16 chr3 180560636 180560884 -37476274 + L1 LINE L1 4653 4897 -1249 378 270 31 57 chr3 180561162 180561321 -37475837 - MLT2F LTR ERVL 0 663 509 4622 176 39 9 chr3 180561350 180562598 -37474560 + L1PA16 LINE L1 4873 6155 -11 722 325 63 50 chr3 180562657 180563116 -37474042 + MLT1J LTR MaLR 17 481 -30 23 0 0 0 chr3 180563293 180563316 -37473842 + AT_rich Low_complexity Low_complexity 1 23 0 449 300 140 30 chr3 180563338 180563538 -37473620 - MIR SINE MIR -35 227 6 201 338 142 34 chr3 180563830 180563978 -37473180 + L3 LINE CR1 1381 1544 -33 287 244 22 18 chr3 180564086 180564363 -37472795 + (TA)n Simple_repeat Simple_repeat 1 278 0 4125 215 104 28 chr3 180564898 180566858 -37470300 + MER52A LTR ERV1 1 1755 0 956 148 12 60 chr3 180567095 180567376 -37469782 - L1M1 LINE L1 -743 5403 5184 1648 199 11 6 chr3 180567376 180567725 -37469433 + L1MA4 LINE L1 5942 6299 -1 42205 37 22 1 chr3 180567817 180573839 -37463319 + L1PA3 LINE L1 5 6153 -2 318 26 0 0 chr3 180574589 180574628 -37462530 + (CA)n Simple_repeat Simple_repeat 1 39 0 183 234 128 64 chr3 180574771 180574865 -37462293 + MER5B DNA MER1_type 78 177 -1 588 224 8 40 chr3 180574874 180574999 -37462159 - MER5A DNA MER1_type 0 189 69 3999 203 7 14 chr3 180575001 180575887 -37461271 - L1PB1 LINE L1 -1564 4582 3703 3428 166 18 20 chr3 180575887 180576727 -37460431 + L1PB1 LINE L1 4604 5451 -700 2109 131 46 22 chr3 180576727 180577093 -37460065 - THE1C LTR MaLR 0 375 1 3428 166 18 20 chr3 180577093 180577433 -37459725 + L1PB1 LINE L1 5451 5790 -361 192 188 40 20 chr3 180577447 180577548 -37459610 + (TA)n Simple_repeat Simple_repeat 1 103 0 279 0 0 0 chr3 180577558 180577589 -37459569 + (CA)n Simple_repeat Simple_repeat 2 32 0 2651 77 0 46 chr3 180577589 180577967 -37459191 + L1PB1 LINE L1 5790 6151 0 371 274 0 0 chr3 180577976 180578049 -37459109 - MER5A DNA MER1_type -116 73 1 27 49 0 0 chr3 180578663 180578704 -37458454 + AT_rich Low_complexity Low_complexity 1 41 0 314 314 87 75 chr3 180578809 180579061 -37458097 + L3 LINE CR1 912 1166 -411 24 67 0 0 chr3 180580203 180580248 -37456910 + AT_rich Low_complexity Low_complexity 1 45 0 25 83 0 0 chr3 180580435 180580495 -37456663 + AT_rich Low_complexity Low_complexity 1 60 0 21 104 0 0 chr3 180581258 180581335 -37455823 + AT_rich Low_complexity Low_complexity 1 77 0 38 51 0 0 chr3 180581401 180581460 -37455698 + AT_rich Low_complexity Low_complexity 1 59 0 4153 103 16 5 chr3 180582158 180582768 -37454390 - L1PA11 LINE L1 -10 6164 5548 396 0 0 0 chr3 180582950 180582994 -37454164 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1495 216 29 24 chr3 180583811 180584191 -37452967 + L1 LINE L1 4748 5129 -1017 925 194 0 0 chr3 180584297 180584462 -37452696 + FRAM SINE Alu 4 168 -8 1395 200 21 7 chr3 180584493 180584778 -37452380 + AluJo SINE Alu 1 289 -23 1956 131 0 14 chr3 180584811 180585122 -37452036 + AluSx SINE Alu 4 310 0 423 0 0 0 chr3 180585876 180585923 -37451235 + (TG)n Simple_repeat Simple_repeat 2 48 0 16139 52 0 10 chr3 180586068 180588917 -37448241 + L1PA5 LINE L1 3312 6143 -11 1118 247 40 43 chr3 180589078 180589524 -37447634 + LTR56 LTR ERV1 1 445 0 247 296 189 67 chr3 180590562 180590906 -37446252 + L2 LINE L2 2852 3237 -76 189 154 0 0 chr3 180591293 180591332 -37445826 + GA-rich Low_complexity Low_complexity 2 40 0 359 350 34 30 chr3 180591452 180591715 -37445443 + L1ME3A LINE L1 5617 5880 -290 2927 95 12 2 chr3 180591722 180592123 -37445035 + MLT2A1 LTR ERVL 1 405 -39 32822 87 9 3 chr3 180592123 180596214 -37440944 + HERVL-A1 LTR ERVL 1245 5362 -292 2028 139 3 3 chr3 180596214 180596517 -37440641 - AluSx SINE Alu -9 303 1 32822 87 9 3 chr3 180596517 180596812 -37440346 + HERVL-A1 LTR ERVL 5362 5654 0 2412 81 9 0 chr3 180596812 180597133 -37440025 + MLT2A1 LTR ERVL 1 324 -120 494 67 13 0 chr3 180597133 180597208 -37439950 + THE1A-int LTR MaLR 1505 1580 0 1781 163 5 56 chr3 180597208 180597582 -37439576 + THE1A LTR MaLR 1 355 0 24 85 0 0 chr3 180597850 180597909 -37439249 + AT_rich Low_complexity Low_complexity 1 59 0 22 56 0 0 chr3 180598265 180598301 -37438857 + AT_rich Low_complexity Low_complexity 1 36 0 198 318 30 30 chr3 180598373 180598439 -37438719 + L2 LINE L2 3198 3263 -9 244 260 26 0 chr3 180598476 180598553 -37438605 + MER116 DNA Mariner 1 79 -1 204 288 17 17 chr3 180600172 180600231 -37436927 - L2 LINE L2 -2 3270 3212 201 176 0 0 chr3 180600232 180600266 -37436892 + A-rich Low_complexity Low_complexity 1 34 0 428 151 252 75 chr3 180600294 180600453 -37436705 - MER5A DNA MER1_type 0 189 3 1463 254 66 80 chr3 180600801 180601479 -37435679 - L1ME3A LINE L1 -14 6156 5488 26 64 0 0 chr3 180601691 180601738 -37435420 + AT_rich Low_complexity Low_complexity 1 47 0 316 212 86 13 chr3 180601738 180601889 -37435269 - L1ME3A LINE L1 -1006 5140 4979 21 95 0 0 chr3 180602756 180602819 -37434339 + AT_rich Low_complexity Low_complexity 1 63 0 23 0 0 0 chr3 180603177 180603200 -37433958 + AT_rich Low_complexity Low_complexity 1 23 0 1785 65 0 0 chr3 180604563 180604795 -37432363 + L1PA5 LINE L1 5919 6150 -4 352 215 0 35 chr3 180605061 180605205 -37431953 + (TA)n Simple_repeat Simple_repeat 1 139 0 273 223 54 71 chr3 180605724 180605836 -37431322 - MER112 DNA MER1_type -5 255 146 464 353 62 5 chr3 180606117 180606341 -37430817 + LTR16A LTR ERVL 108 344 -106 193 354 0 0 chr3 180606535 180606600 -37430558 - L2 LINE L2 -1 3271 3207 1195 315 177 19 chr3 180606605 180607332 -37429826 + L2 LINE L2 1198 2039 -1275 1951 110 0 7 chr3 180607348 180607621 -37429537 - AluSc SINE Alu -2 307 37 958 293 57 6 chr3 180607774 180608092 -37429066 - MER110 LTR ERV1 0 491 158 741 263 83 0 chr3 180608428 180608633 -37428525 + MER58A DNA MER1_type 2 223 -1 25 83 0 0 chr3 180608694 180608754 -37428404 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr3 180609589 180609610 -37427548 + AT_rich Low_complexity Low_complexity 1 21 0 1020 235 74 32 chr3 180610375 180610819 -37426339 - MLT1D LTR MaLR 0 505 1 310 242 8 25 chr3 180611005 180611124 -37426034 - MLT1J2 LTR MaLR -17 411 276 6358 37 11 0 chr3 180611929 180612688 -37424470 - L1PA5 LINE L1 -2 6152 5386 2012 132 3 0 chr3 180613992 180614295 -37422863 - AluSq SINE Alu -9 304 1 2703 10 0 0 chr3 180614749 180615047 -37422111 - AluYa5 SINE Alu -13 298 1 1951 140 3 13 chr3 180615226 180615541 -37421617 + AluSq SINE Alu 1 312 -1 1092 154 0 0 chr3 180615541 180615710 -37421448 + AluSg/x SINE Alu 132 300 -10 185 343 14 0 chr3 180617070 180617140 -37420018 - MIR SINE MIR -6 256 186 300 91 0 0 chr3 180617673 180617717 -37419441 + (CA)n Simple_repeat Simple_repeat 1 44 0 226 210 210 49 chr3 180617778 180617859 -37419299 - MIR SINE MIR 0 262 169 329 384 49 0 chr3 180617865 180618029 -37419129 + MER97c DNA MER1_type? 8 179 -911 301 227 80 13 chr3 180618557 180618632 -37418526 + MLT1L LTR MaLR 332 411 -204 24 77 0 0 chr3 180618763 180618815 -37418343 + AT_rich Low_complexity Low_complexity 1 52 0 191 349 32 16 chr3 180619074 180619200 -37417958 - L2 LINE L2 -519 2795 2668 1209 289 98 43 chr3 180619233 180619448 -37417710 - L2 LINE L2 -1096 2218 2016 1630 202 18 12 chr3 180619448 180619789 -37417369 + MER61A LTR ERV1 1 343 0 1209 289 98 43 chr3 180619789 180620254 -37416904 - L2 LINE L2 -1298 2016 1500 569 352 76 20 chr3 180620266 180620675 -37416483 - L2 LINE L2 -2066 1248 817 1811 88 27 0 chr3 180620889 180621150 -37416008 - L1PA13 LINE L1 -8 6155 5888 600 106 19 0 chr3 180621153 180621257 -37415901 - L1PA13 LINE L1 -785 5378 5273 * 2456 184 6 26 chr3 180621251 180621788 -37415370 - L1P LINE L1 -806 5340 4815 2464 119 22 8 chr3 180621829 180622199 -37414959 - THE1C LTR MaLR 0 375 1 6784 155 38 3 chr3 180622199 180623325 -37413833 - THE1C-int LTR MaLR 0 1580 415 874 156 6 6 chr3 180623343 180623503 -37413655 - THE1C-int LTR MaLR -1420 160 1 2307 135 11 16 chr3 180623503 180623880 -37413278 - THE1C LTR MaLR 0 375 1 7560 186 15 6 chr3 180623880 180625379 -37411779 + L1P LINE L1 3320 4831 -1315 5888 218 100 56 chr3 180626280 180628593 -37408565 - Tigger1 DNA MER2_type -1 2417 3 2331 70 13 10 chr3 180629746 180630048 -37407110 + AluY SINE Alu 1 303 -8 689 292 121 21 chr3 180630101 180630433 -37406725 + L2 LINE L2 2929 3293 -20 14669 32 1 0 chr3 180632123 180633925 -37403233 - L1PA3 LINE L1 -2195 3951 2149 12090 22 0 1 chr3 180633925 180636149 -37401009 + L1PA3 LINE L1 3972 6191 0 409 207 80 27 chr3 180636318 180636468 -37400690 - L1M4 LINE L1 -3160 2986 2829 212 291 0 0 chr3 180636471 180636526 -37400632 + (TA)n Simple_repeat Simple_repeat 2 56 0 726 248 27 30 chr3 180636571 180636833 -37400325 - L1M4 LINE L1 -3329 2817 2557 21 0 0 0 chr3 180637138 180637159 -37399999 + AT_rich Low_complexity Low_complexity 1 21 0 2336 40 17 3 chr3 180637345 180637641 -37399517 - L1PA4 LINE L1 -11 6144 5845 274 243 65 9 chr3 180637801 180637908 -37399250 - LTR37B LTR ERV1 -100 368 256 219 36 0 0 chr3 180638811 180638839 -37398319 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 184 219 0 0 chr3 180639231 180639272 -37397886 + L3 LINE CR1 1144 1184 -393 332 300 20 0 chr3 180639314 180639414 -37397744 + L3 LINE CR1 1293 1394 -183 5743 116 3 0 chr3 180639560 180640691 -37396467 - L1PB1 LINE L1 0 6151 5017 685 337 47 35 chr3 180642853 180643259 -37393899 + HERV16 LTR ERVL 1019 1429 -3567 1199 303 94 52 chr3 180643344 180643740 -37393418 + HERV16 LTR ERVL 1606 1984 -3312 1727 203 0 0 chr3 180643740 180644041 -37393117 + AluJo SINE Alu 1 301 -11 1199 303 94 52 chr3 180644041 180644626 -37392532 + HERV16 LTR ERVL 1984 2650 -2646 420 301 108 14 chr3 180644741 180644954 -37392204 - L2 LINE L2 -252 3061 2829 321 279 84 79 chr3 180645118 180645308 -37391850 - L2 LINE L2 0 3313 3123 306 0 0 0 chr3 180645606 180645640 -37391518 + (CA)n Simple_repeat Simple_repeat 2 35 0 797 314 18 0 chr3 180646463 180646692 -37390466 - MIR SINE MIR 0 262 30 22 0 0 0 chr3 180647011 180647033 -37390125 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr3 180647202 180647226 -37389932 + AT_rich Low_complexity Low_complexity 1 24 0 1894 137 18 0 chr3 180647490 180647768 -37389390 - AluSc SINE Alu -26 283 1 2612 209 18 20 chr3 180647914 180648474 -37388684 + MER89 LTR ERV1 1 559 0 284 308 128 48 chr3 180648741 180648968 -37388190 - MIR SINE MIR -16 246 2 426 302 111 12 chr3 180649246 180649418 -37387740 + MER5A DNA MER1_type 1 189 0 1008 187 26 48 chr3 180649504 180649734 -37387424 - AluJb SINE Alu -3 309 85 1856 131 0 45 chr3 180650336 180650649 -37386509 - AluSc SINE Alu -10 299 1 297 193 121 29 chr3 180651106 180651246 -37385912 - L1ME4a LINE L1 -2 6119 5967 1485 181 55 7 chr3 180651496 180651789 -37385369 + AluJo SINE Alu 1 307 -5 2676 239 87 12 chr3 180651890 180653285 -37383873 - L1MB7 LINE L1 -15 6980 5482 319 112 28 67 chr3 180653314 180653493 -37383665 + (TA)n Simple_repeat Simple_repeat 2 173 0 3646 277 39 49 chr3 180653625 180654923 -37382235 - L1MB7 LINE L1 -5565 1294 10 398 295 197 5 chr3 180654957 180655150 -37382008 - MIR SINE MIR -26 236 7 1313 115 0 0 chr3 180655984 180656166 -37380992 + AluSg/x SINE Alu 125 306 -6 1263 202 42 60 chr3 180657200 180657531 -37379627 + MLT1B LTR MaLR 66 390 0 382 117 26 26 chr3 180658223 180658300 -37378858 - MADE1 DNA Mariner -1 79 3 23 0 0 0 chr3 180658332 180658355 -37378803 + AT_rich Low_complexity Low_complexity 1 23 0 15523 82 1 1 chr3 180658355 180661259 -37375899 - L1PA6 LINE L1 -7 6147 3244 15910 132 12 19 chr3 180661259 180663834 -37373324 - L1PA6 LINE L1 -3579 2567 11 30 27 0 0 chr3 180664925 180664962 -37372196 + AT_rich Low_complexity Low_complexity 1 37 0 713 122 27 68 chr3 180665056 180665203 -37371955 + FLAM_C SINE Alu 2 142 -1 31 26 0 0 chr3 180666493 180666531 -37370627 + AT_rich Low_complexity Low_complexity 1 38 0 317 280 11 11 chr3 180667093 180667186 -37369972 + L2 LINE L2 56 148 -3166 668 259 95 60 chr3 180667281 180667812 -37369346 - L1MC5 LINE L1 -814 7147 6596 549 283 61 26 chr3 180667858 180668169 -37368989 - L1ME3A LINE L1 -8 6162 5841 184 169 0 31 chr3 180668280 180668345 -37368813 + (TATAA)n Simple_repeat Simple_repeat 2 64 0 30 27 0 0 chr3 180668345 180668382 -37368776 + AT_rich Low_complexity Low_complexity 1 37 0 2256 167 138 6 chr3 180668387 180668924 -37368234 + MER7C DNA MER2_type 1 601 -1 1226 249 92 12 chr3 180668943 180669345 -37367813 + HERVL40 LTR ERVL 3841 4274 -1256 1530 229 88 20 chr3 180669346 180669744 -37367414 - MLT1D LTR MaLR -3 502 78 22 35 0 0 chr3 180670009 180670038 -37367120 + AT_rich Low_complexity Low_complexity 1 29 0 5423 131 231 88 chr3 180670098 180671584 -37365574 + pTR5 LTR ERV1 741 2438 0 208 250 39 0 chr3 180672461 180672513 -37364645 + L2 LINE L2 2659 2712 -602 250 333 13 0 chr3 180672677 180672752 -37364406 - MIR SINE MIR -105 157 82 330 342 10 88 chr3 180672937 180673085 -37364073 - MER5B DNA MER1_type 0 178 47 1961 150 0 0 chr3 180673085 180673378 -37363780 - AluSx SINE Alu -5 307 15 330 342 10 88 chr3 180673378 180673422 -37363736 - MER5B DNA MER1_type -131 47 1 1634 92 62 72 chr3 180673426 180673730 -37363428 - LTR14B LTR ERVK 0 608 308 462 57 0 0 chr3 180673703 180673768 -37363390 - LTR14A LTR ERVK -232 271 54 * 425 78 322 22 chr3 180673769 180673859 -37363299 - LTR14B LTR ERVK -491 117 1 433 324 117 29 chr3 180673863 180674156 -37363002 + L2 LINE L2 2802 3113 -200 189 0 0 0 chr3 180674396 180674417 -37362741 + (TA)n Simple_repeat Simple_repeat 2 22 0 1988 133 0 0 chr3 180674419 180674698 -37362460 - AluSg SINE Alu -31 279 1 289 324 35 0 chr3 180674700 180674842 -37362316 + MLT1G1 LTR MaLR 1 147 -448 429 181 48 114 chr3 180675075 180675246 -37361912 + MLT1H1 LTR MaLR 434 555 0 234 290 37 47 chr3 180675258 180675365 -37361793 - MIR SINE MIR -39 223 118 1546 106 0 0 chr3 180675721 180675929 -37361229 - AluSg/x SINE Alu -15 295 88 3932 152 43 48 chr3 180675929 180676889 -37360269 + pTR5 LTR ERV1 743 2019 -419 259 245 32 21 chr3 180676889 180676983 -37360175 + LTR30 LTR ERV1 548 642 -80 1587 97 1 10 chr3 180676986 180677227 -37359931 + pTR5 LTR ERV1 172 702 -78 623 93 0 0 chr3 180677209 180677295 -37359863 - AluSc SINE Alu -218 91 6 * 1458 216 48 65 chr3 180678085 180678622 -37358536 - MER67C LTR ERV1 0 514 4 6377 57 11 4 chr3 180679362 180680183 -37356975 - L1PA7 LINE L1 -7 6147 5321 354 247 103 41 chr3 180680171 180680365 -37356793 + L1M1 LINE L1 2861 3066 -4499 * 358 171 0 0 chr3 180680365 180680435 -37356723 + L1MA4A LINE L1 6221 6290 -13 3266 93 9 7 chr3 180680699 180681151 -37356007 + MLT2A2 LTR ERVL 1 453 0 188 241 111 0 chr3 180681877 180681931 -37355227 - MIR SINE MIR -2 260 201 183 373 78 10 chr3 180682672 180682774 -37354384 + MIR SINE MIR 21 129 -79 1873 225 59 12 chr3 180683114 180683603 -37353555 - L1MB7 LINE L1 -26 6656 6145 3404 249 47 28 chr3 180683689 180685102 -37352056 - L1MB7 LINE L1 -530 6152 4717 315 44 22 0 chr3 180685122 180685167 -37351991 - MADE1 DNA Mariner -34 46 1 4689 250 69 50 chr3 180685167 180687434 -37349724 - L1MB7 LINE L1 -4250 2396 8 37 39 0 0 chr3 180687470 180687521 -37349637 + AT_rich Low_complexity Low_complexity 1 51 0 233 165 82 0 chr3 180687550 180687635 -37349523 + (TA)n Simple_repeat Simple_repeat 2 93 0 1418 255 57 4 chr3 180688468 180689017 -37348141 - L1M4 LINE L1 -1097 5049 4472 22 70 0 0 chr3 180689143 180689186 -37347972 + AT_rich Low_complexity Low_complexity 1 43 0 27 49 0 0 chr3 180689483 180689524 -37347634 + AT_rich Low_complexity Low_complexity 1 41 0 21 71 0 0 chr3 180689695 180689737 -37347421 + AT_rich Low_complexity Low_complexity 1 42 0 2612 0 41 0 chr3 180689937 180690230 -37346928 - AluYa5 SINE Alu -6 305 1 778 269 18 14 chr3 180690478 180690697 -37346461 - LTR16B LTR ERVL -1 463 244 697 373 26 33 chr3 180691309 180691733 -37345425 + LTR16B LTR ERVL 34 454 -10 470 143 29 19 chr3 180692052 180692157 -37345001 + L1M LINE L1 5284 5389 -955 13694 41 0 5 chr3 180692157 180694594 -37342564 + L1PA5 LINE L1 3714 6146 -8 180 0 0 0 chr3 180695111 180695131 -37342027 + (A)n Simple_repeat Simple_repeat 1 20 0 445 359 80 41 chr3 180695294 180695948 -37341210 - L1ME4a LINE L1 -179 5942 5258 466 205 66 36 chr3 180696244 180696410 -37340748 + L1ME1 LINE L1 5676 5846 -320 2197 114 3 0 chr3 180696434 180696741 -37340417 + AluSx SINE Alu 1 308 -4 383 202 11 0 chr3 180696751 180696845 -37340313 + GA-rich Low_complexity Low_complexity 2 96 0 901 260 42 11 chr3 180696854 180697139 -37340019 + L1ME1 LINE L1 5867 6160 -6 313 251 43 21 chr3 180697181 180697368 -37339790 + L1M4 LINE L1 3089 3279 -2867 214 390 57 44 chr3 180700050 180700278 -37336880 - L2 LINE L2 -188 3084 2854 254 288 37 86 chr3 180700322 180700485 -37336673 - L2 LINE L2 -571 2743 2589 434 98 0 0 chr3 180700695 180700756 -37336402 + MADE1 DNA Mariner 20 80 0 1939 149 78 57 chr3 180701973 180702360 -37334798 + MSTB1 LTR MaLR 1 399 -33 1947 136 6 19 chr3 180702360 180702676 -37334482 - AluSq SINE Alu -1 312 1 1939 149 78 57 chr3 180702676 180702711 -37334447 + MSTB1 LTR MaLR 399 432 0 410 341 0 8 chr3 180703730 180703862 -37333296 + MER5A DNA MER1_type 59 189 0 183 314 43 0 chr3 180704244 180704314 -37332844 - MIR3 SINE MIR -11 197 125 180 276 86 0 chr3 180704392 180704450 -37332708 + MIR SINE MIR 70 132 -130 2907 174 20 0 chr3 180705660 180706161 -37330997 - Tigger1 DNA MER2_type 0 2418 1908 1148 205 30 16 chr3 180706261 180706676 -37330482 + MLT1D LTR MaLR 1 505 0 22 0 0 0 chr3 180706903 180706925 -37330233 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr3 180707503 180707530 -37329628 + AT_rich Low_complexity Low_complexity 1 27 0 526 202 0 10 chr3 180708673 180708772 -37328386 + MER4A LTR ERV1 1 98 -566 * 1723 132 155 82 chr3 180708768 180709148 -37328010 + MER4A LTR ERV1 257 664 0 22 0 0 0 chr3 180709523 180709545 -37327613 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 180709767 180709788 -37327370 + AT_rich Low_complexity Low_complexity 1 21 0 193 147 0 147 chr3 180709848 180709916 -37327242 - L2 LINE L2 -389 2883 2826 682 310 108 10 chr3 180709917 180710214 -37326944 - L2 LINE L2 -627 2687 2362 358 291 58 0 chr3 180710236 180710339 -37326819 + MLT1K LTR MaLR 326 434 -154 303 341 78 59 chr3 180710367 180710622 -37326536 + L2 LINE L2 2838 3097 -216 233 266 25 0 chr3 180710639 180710718 -37326440 + (TA)n Simple_repeat Simple_repeat 2 82 0 24 0 0 0 chr3 180711413 180711437 -37325721 + AT_rich Low_complexity Low_complexity 1 24 0 13593 26 0 0 chr3 180711512 180713884 -37323274 - L1PA3 LINE L1 -3 6152 3783 7311 36 0 0 chr3 180713884 180714798 -37322360 + L1PA3 LINE L1 2871 3784 -2362 2519 100 0 6 chr3 180715269 180715628 -37321530 - L1PA8 LINE L1 -2 6170 5814 1785 39 0 0 chr3 180715630 180715836 -37321322 - AluY SINE Alu -1 310 105 207 0 0 0 chr3 180715868 180715891 -37321267 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 193 376 0 35 chr3 180717003 180717088 -37320070 - L2 LINE L2 -81 3191 3110 429 363 5 15 chr3 180718571 180718775 -37318383 + MIR SINE MIR 28 229 -33 183 80 0 0 chr3 180718798 180718823 -37318335 + (CAT)n Simple_repeat Simple_repeat 3 27 0 14416 208 34 8 chr3 180718884 180722433 -37314725 + L1PB1 LINE L1 6 3998 -2869 222 37 0 0 chr3 180722433 180722460 -37314698 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 14416 208 34 8 chr3 180722460 180725398 -37311760 + L1PB1 LINE L1 3998 6859 -8 28 48 0 0 chr3 180725444 180725486 -37311672 + AT_rich Low_complexity Low_complexity 1 42 0 4180 200 120 1 chr3 180725597 180726508 -37310650 + LTR28 LTR ERV1 2 1020 0 311 225 36 27 chr3 180727248 180727359 -37309799 + L1ME2 LINE L1 6053 6164 0 23 0 0 0 chr3 180728336 180728359 -37308799 + AT_rich Low_complexity Low_complexity 1 23 0 681 323 132 15 chr3 180728611 180729068 -37308090 + L2 LINE L2 2717 3246 -67 1640 269 78 30 chr3 180730135 180730663 -37306495 + MLT1E LTR MaLR 40 592 -1 180 77 0 0 chr3 180730682 180730708 -37306450 + (A)n Simple_repeat Simple_repeat 1 26 0 187 250 0 0 chr3 180731326 180731370 -37305788 + MIR SINE MIR 211 254 -8 388 272 18 54 chr3 180731573 180731797 -37305361 + L1MC4 LINE L1 7826 8041 -1 1335 67 6 0 chr3 180731975 180732155 -37305003 + L1MA1 LINE L1 6122 6302 0 357 305 0 0 chr3 180732437 180732519 -37304639 - MER2 DNA MER2_type -262 83 2 1294 60 0 18 chr3 180732685 180732852 -37304306 + AluY SINE Alu 129 292 -19 2293 50 3 3 chr3 180732858 180733286 -37303872 + AluY SINE Alu 1 428 0 588 75 12 0 chr3 180733288 180733495 -37303663 + AluY SINE Alu 203 410 0 1354 243 56 9 chr3 180734248 180734586 -37302572 + MLT2D LTR ERVL 13 366 -48 252 0 0 0 chr3 180734596 180734624 -37302534 + (TG)n Simple_repeat Simple_repeat 2 29 0 299 325 70 0 chr3 180734646 180734760 -37302398 + MIR3 SINE MIR 76 197 -11 1660 228 43 18 chr3 180737035 180737545 -37299613 + Charlie1b DNA MER1_type 1 523 0 1902 118 84 64 chr3 180738124 180738481 -37298677 - THE1B LTR MaLR 0 364 1 609 205 41 0 chr3 180739673 180739795 -37297363 + MER5A DNA MER1_type 63 189 0 310 250 0 0 chr3 180742623 180742695 -37294463 + MER94 DNA DNA 44 115 -19 2156 117 3 0 chr3 180743754 180744053 -37293105 + AluSx SINE Alu 1 300 -12 22 0 0 0 chr3 180744530 180744552 -37292606 + AT_rich Low_complexity Low_complexity 1 22 0 4485 118 22 10 chr3 180744582 180745269 -37291889 + L1PA11 LINE L1 5478 6172 -2 248 255 92 78 chr3 180745727 180745880 -37291278 - L2 LINE L2 0 3313 3159 2482 43 0 3 chr3 180746128 180746427 -37290731 - AluY SINE Alu -13 298 1 27 0 0 0 chr3 180746511 180746538 -37290620 + AT_rich Low_complexity Low_complexity 1 27 0 24 32 0 0 chr3 180746618 180746649 -37290509 + AT_rich Low_complexity Low_complexity 1 31 0 381 257 113 15 chr3 180746745 180747180 -37289978 - L1ME LINE L1 -707 5455 4971 242 299 128 21 chr3 180747437 180747624 -37289534 - L1ME LINE L1 -1439 4707 4501 491 319 69 39 chr3 180747729 180748061 -37289097 - L1ME LINE L1 -2932 3214 2873 1911 178 62 91 chr3 180748260 180748789 -37288369 - MLT2B2 LTR ERVL -1 514 1 291 136 0 0 chr3 180749992 180750051 -37287107 + (CA)n Simple_repeat Simple_repeat 2 60 0 2203 75 0 0 chr3 180750318 180750599 -37286559 - AluY SINE Alu 0 311 31 219 133 0 0 chr3 180750789 180750834 -37286324 + (TCTG)n Simple_repeat Simple_repeat 4 48 0 269 304 51 13 chr3 180751347 180751505 -37285653 - L1MC4 LINE L1 -780 7262 7099 286 266 27 90 chr3 180751615 180751837 -37285321 + L1MC4 LINE L1 7835 8042 0 369 293 94 36 chr3 180751923 180752336 -37284822 + L1ME4a LINE L1 5469 5905 -216 240 279 38 25 chr3 180752533 180752612 -37284546 + MER5A DNA MER1_type 85 164 -25 264 221 0 15 chr3 180753337 180753405 -37283753 - L1MC4 LINE L1 -1337 6705 6639 574 276 13 0 chr3 180753527 180753683 -37283475 + MIR SINE MIR 78 235 -27 2237 114 0 0 chr3 180753965 180754264 -37282894 + AluSx SINE Alu 1 299 -13 486 0 0 0 chr3 180754264 180754318 -37282840 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 1375 218 36 11 chr3 180755512 180755792 -37281366 - AluJo SINE Alu -21 291 5 232 316 68 8 chr3 180756087 180756220 -37280938 + MIR SINE MIR 118 258 -4 25 0 0 0 chr3 180758121 180758146 -37279012 + AT_rich Low_complexity Low_complexity 1 25 0 453 18 0 0 chr3 180759755 180759811 -37277347 + L1PA4 LINE L1 6097 6152 -3 21 71 0 0 chr3 180760336 180760378 -37276780 + AT_rich Low_complexity Low_complexity 1 42 0 1478 191 102 0 chr3 180761021 180761335 -37275823 + MER7A DNA MER2_type 1 344 -2 21 36 0 0 chr3 180761407 180761435 -37275723 + AT_rich Low_complexity Low_complexity 1 28 0 205 261 0 0 chr3 180761531 180761596 -37275562 + (TA)n Simple_repeat Simple_repeat 2 66 0 2147 102 7 0 chr3 180762010 180762294 -37274864 + AluSx SINE Alu 1 286 -26 181 75 50 0 chr3 180767127 180767167 -37269991 + (TTAA)n Simple_repeat Simple_repeat 4 45 0 22 56 0 0 chr3 180767197 180767233 -37269925 + AT_rich Low_complexity Low_complexity 1 36 0 764 250 43 5 chr3 180767604 180767792 -37269366 + MER20 DNA MER1_type 24 218 -1 2501 255 120 42 chr3 180767960 180768813 -37268345 - L1ME2 LINE L1 -9 6155 5370 1827 51 0 4 chr3 180768813 180769048 -37268110 + L1PA4 LINE L1 5919 6152 -3 2501 255 120 42 chr3 180769048 180770525 -37266633 - L1ME2 LINE L1 -794 5370 3607 1344 192 6 64 chr3 180770525 180770837 -37266321 + AluJo SINE Alu 1 294 -18 2501 255 120 42 chr3 180770837 180771067 -37266091 - L1ME2 LINE L1 -2557 3607 3396 280 238 48 24 chr3 180772056 180772140 -37265018 + MIR SINE MIR 82 167 -95 189 0 0 0 chr3 180772363 180772384 -37264774 + (TTCA)n Simple_repeat Simple_repeat 4 24 0 24 0 0 0 chr3 180772581 180772605 -37264553 + AT_rich Low_complexity Low_complexity 1 24 0 26 74 0 0 chr3 180773014 180773068 -37264090 + AT_rich Low_complexity Low_complexity 1 54 0 199 359 99 38 chr3 180773558 180773689 -37263469 - MIR3 SINE MIR -67 141 3 2104 134 3 0 chr3 180775224 180775530 -37261628 + AluSq SINE Alu 1 307 -6 262 278 214 40 chr3 180775621 180775794 -37261364 + MIR SINE MIR 2 204 -58 261 369 34 13 chr3 180775940 180776089 -37261069 - MIR SINE MIR -12 250 99 25 0 0 0 chr3 180776105 180776130 -37261028 + AT_rich Low_complexity Low_complexity 1 25 0 28 71 0 0 chr3 180776328 180776384 -37260774 + AT_rich Low_complexity Low_complexity 1 56 0 234 250 36 71 chr3 180776754 180776838 -37260320 + L2 LINE L2 3220 3300 -13 * 2096 318 99 34 chr3 180776825 180778250 -37258908 - L2 LINE L2 -147 3166 1647 29 60 0 0 chr3 180778981 180779031 -37258127 + AT_rich Low_complexity Low_complexity 1 50 0 242 291 118 47 chr3 180779086 180779213 -37257945 - MIR SINE MIR -74 188 53 253 132 0 0 chr3 180779457 180779495 -37257663 - MER53 DNA DNA -3 186 149 50 80 0 0 chr3 180779582 180779695 -37257463 + AT_rich Low_complexity Low_complexity 1 113 0 458 231 16 0 chr3 180779711 180779832 -37257326 - MER53 DNA DNA -66 123 1 21 36 0 0 chr3 180780814 180780842 -37256316 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr3 180781946 180781986 -37255172 + AT_rich Low_complexity Low_complexity 1 40 0 33 56 0 0 chr3 180782912 180782966 -37254192 + AT_rich Low_complexity Low_complexity 1 54 0 24 0 0 0 chr3 180783109 180783133 -37254025 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr3 180785473 180785496 -37251662 + AT_rich Low_complexity Low_complexity 1 23 0 652 152 90 41 chr3 180785824 180785969 -37251189 - AluJb SINE Alu -22 290 139 2145 92 0 7 chr3 180786333 180786628 -37250530 + AluY SINE Alu 17 309 -2 1634 167 3 44 chr3 180786738 180787031 -37250127 + AluSx SINE Alu 1 281 -31 395 0 40 0 chr3 180787034 180787084 -37250074 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 24 32 0 0 chr3 180787842 180787873 -37249285 + AT_rich Low_complexity Low_complexity 1 31 0 390 253 13 53 chr3 180788011 180788161 -37248997 - L2 LINE L2 -6 3307 3164 450 384 70 31 chr3 180789197 180789582 -37247576 + L2 LINE L2 239 638 -2676 1666 334 133 29 chr3 180789582 180790982 -37246176 + L2 LINE L2 998 2543 -771 532 284 8 15 chr3 180791308 180791442 -37245716 + L2 LINE L2 3179 3311 -2 273 235 96 102 chr3 180791456 180791564 -37245594 + L2 LINE L2 2084 2193 -1121 2192 57 11 0 chr3 180791564 180791879 -37245279 + AluY SINE Alu 1 318 0 273 235 96 102 chr3 180791879 180791935 -37245223 + L2 LINE L2 2193 2248 -1066 786 348 89 8 chr3 180791999 180792381 -37244777 + L2 LINE L2 2487 2899 -415 21 100 0 0 chr3 180792998 180793068 -37244090 + AT_rich Low_complexity Low_complexity 1 70 0 303 291 78 17 chr3 180793648 180793827 -37243331 + L2 LINE L2 3104 3293 -20 184 380 53 29 chr3 180794255 180794426 -37242732 + L3 LINE CR1 1384 1558 -19 478 261 0 45 chr3 180795765 180795899 -37241259 - FLAM_A SINE Alu -5 128 1 455 326 122 0 chr3 180796027 180796199 -37240959 + MIR SINE MIR 60 252 -10 201 39 0 0 chr3 180796313 180796339 -37240819 + (CA)n Simple_repeat Simple_repeat 2 27 0 260 292 62 26 chr3 180796453 180796566 -37240592 - L2 LINE L2 -15 3298 3182 510 196 0 0 chr3 180797206 180797318 -37239840 + GA-rich Low_complexity Low_complexity 3 114 0 252 236 0 0 chr3 180797726 180797815 -37239343 + A-rich Low_complexity Low_complexity 1 89 0 * 754 169 6 6 chr3 180797798 180797970 -37239188 + GA-rich Low_complexity Low_complexity 3 174 0 248 167 0 19 chr3 180799105 180799159 -37237999 + CT-rich Low_complexity Low_complexity 5 57 0 21 36 0 0 chr3 180800146 180800174 -37236984 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr3 180800202 180800232 -37236926 + AT_rich Low_complexity Low_complexity 1 30 0 222 91 0 0 chr3 180800293 180800326 -37236832 + (CA)n Simple_repeat Simple_repeat 2 34 0 1905 183 5 30 chr3 180800338 180800710 -37236448 + MLT1A1 LTR MaLR 3 365 0 25 31 0 0 chr3 180800969 180801001 -37236157 + AT_rich Low_complexity Low_complexity 1 32 0 2077 102 3 3 chr3 180801013 180801298 -37235860 - AluSx SINE Alu -13 299 15 199 342 26 0 chr3 180801531 180801607 -37235551 - L2 LINE L2 -2 3311 3234 977 221 0 9 chr3 180801910 180802132 -37235026 + L1 LINE L1 5015 5234 -912 1824 272 44 60 chr3 180803015 180803085 -37234073 + L2 LINE L2 2283 2353 -960 1850 129 22 0 chr3 180803085 180803406 -37233752 - AluSx SINE Alu 0 327 1 1824 272 44 60 chr3 180803406 180803783 -37233375 + L2 LINE L2 2353 2717 -596 2063 97 4 0 chr3 180803783 180804061 -37233097 - AluSg SINE Alu -31 279 1 1824 272 44 60 chr3 180804061 180804362 -37232796 + L2 LINE L2 2717 3021 -292 532 272 63 116 chr3 180804427 180804948 -37232210 - MER21B LTR ERV1 -202 729 160 434 299 49 42 chr3 180804988 180805252 -37231906 + L2 LINE L2 3048 3313 0 27 49 0 0 chr3 180805341 180805382 -37231776 + AT_rich Low_complexity Low_complexity 1 41 0 22 56 0 0 chr3 180806005 180806041 -37231117 + AT_rich Low_complexity Low_complexity 1 36 0 243 0 0 0 chr3 180806935 180806962 -37230196 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 214 195 0 0 chr3 180809462 180809503 -37227655 + (TATAA)n Simple_repeat Simple_repeat 5 45 0 30 27 0 0 chr3 180810218 180810255 -37226903 + AT_rich Low_complexity Low_complexity 1 37 0 1394 221 19 48 chr3 180812063 180812439 -37224719 + MLT1A1 LTR MaLR 1 365 0 28 48 0 0 chr3 180813185 180813227 -37223931 + AT_rich Low_complexity Low_complexity 1 42 0 9227 129 11 1 chr3 180813308 180813806 -37223352 - L1PA8 LINE L1 -2 6170 5679 2002 128 3 33 chr3 180813806 180814112 -37223046 - AluSp SINE Alu -11 302 6 9227 129 11 1 chr3 180814112 180815880 -37221278 - L1PA8 LINE L1 -493 5679 3913 207 234 122 75 chr3 180816327 180816434 -37220724 - L2 LINE L2 -16 3256 3145 252 355 107 0 chr3 180816507 180816628 -37220530 - L2 LINE L2 -468 2846 2713 25 51 0 0 chr3 180816823 180816862 -37220296 + AT_rich Low_complexity Low_complexity 1 39 0 2076 149 35 73 chr3 180816956 180817407 -37219751 - Tigger2a DNA MER2_type 0 434 1 28 48 0 0 chr3 180817644 180817686 -37219472 + AT_rich Low_complexity Low_complexity 1 42 0 1966 125 10 19 chr3 180820439 180820752 -37216406 + AluSp SINE Alu 1 310 -3 1386 219 113 3 chr3 180820824 180821135 -37216023 - MER2 DNA MER2_type 0 345 1 2164 109 0 0 chr3 180822815 180823136 -37214022 - AluSx SINE Alu 0 321 1 2394 148 54 7 chr3 180824496 180824901 -37212257 - MSTA LTR MaLR -2 426 3 241 245 0 0 chr3 180825279 180825332 -37211826 + (CATA)n Simple_repeat Simple_repeat 2 54 0 57 54 0 0 chr3 180825485 180825577 -37211581 + AT_rich Low_complexity Low_complexity 1 92 0 26 30 0 0 chr3 180825637 180825670 -37211488 + AT_rich Low_complexity Low_complexity 1 33 0 18412 191 78 21 chr3 180825956 180828235 -37208923 + L1M1 LINE L1 16 2164 -5401 2109 119 3 0 chr3 180828235 180828530 -37208628 + AluSg SINE Alu 1 296 -14 18412 191 78 21 chr3 180828530 180829101 -37208057 + L1M1 LINE L1 2164 2701 -4864 180 0 0 0 chr3 180829101 180829121 -37208037 + (CAA)n Simple_repeat Simple_repeat 2 21 0 18412 191 78 21 chr3 180829121 180832088 -37205070 + L1M1 LINE L1 2701 6181 -1384 1181 186 60 167 chr3 180832118 180832639 -37204519 + MER67D LTR ERV1 50 514 0 577 284 23 17 chr3 180833216 180833392 -37203766 + MER69A DNA AcHobo 1 177 0 654 79 0 0 chr3 180834652 180834741 -37202417 + (TA)n Simple_repeat Simple_repeat 2 90 0 1149 279 177 34 chr3 180834757 180835770 -37201388 - L2 LINE L2 -18 3295 2135 720 235 8 76 chr3 180835871 180836109 -37201049 - LTR1B LTR ERV1 -604 222 1 39 38 0 0 chr3 180836238 180836291 -37200867 + AT_rich Low_complexity Low_complexity 1 53 0 202 150 17 33 chr3 180836647 180836707 -37200451 + T-rich Low_complexity Low_complexity 3 61 0 304 253 91 97 chr3 180837741 180838061 -37199097 + L1M2 LINE L1 1688 2005 -4844 322 294 47 38 chr3 180838275 180838486 -37198672 + L1MC4a LINE L1 5718 5930 -1878 905 302 118 79 chr3 180839665 180840397 -37196761 - L2 LINE L2 -231 3082 2323 24 32 0 0 chr3 180841720 180841751 -37195407 + AT_rich Low_complexity Low_complexity 1 31 0 180 246 18 70 chr3 180841897 180841954 -37195204 - MIR3 SINE MIR -49 159 106 2075 212 132 32 chr3 180842920 180843671 -37193487 - LTR1B LTR ERV1 0 826 1 288 122 184 0 chr3 180844656 180844705 -37192453 - MER21A LTR ERV1 -118 813 756 1639 266 117 31 chr3 180844706 180845247 -37191911 - MER21B LTR ERV1 -258 605 19 328 232 43 0 chr3 180845274 180845343 -37191815 - MER21B LTR ERV1 -777 86 15 1783 174 0 16 chr3 180845827 180846144 -37191014 + AluSx SINE Alu 1 312 0 742 251 26 5 chr3 180847236 180847427 -37189731 - MER58 DNA MER1_type -144 197 3 25 31 0 0 chr3 180847466 180847498 -37189660 + AT_rich Low_complexity Low_complexity 1 32 0 641 284 32 12 chr3 180847688 180847938 -37189220 - L1ME2 LINE L1 -8 6156 5902 924 304 26 16 chr3 180847940 180848608 -37188550 - L1MEc LINE L1 -3604 2476 1840 274 307 57 39 chr3 180848648 180848928 -37188230 - L1MEc LINE L1 -4534 1546 1262 2140 103 0 42 chr3 180849030 180849342 -37187816 + AluSq SINE Alu 5 303 -10 207 0 0 0 chr3 180849342 180849365 -37187793 + (TA)n Simple_repeat Simple_repeat 2 24 0 426 325 102 12 chr3 180849852 180850107 -37187051 - L1MEc LINE L1 -4817 1263 986 251 259 0 0 chr3 180850110 180850164 -37186994 - MLT2B3 LTR ERVL -2 552 499 10906 168 27 22 chr3 180850165 180852076 -37185082 - ERVL-B3 LTR ERVL -1798 3966 2048 3199 214 32 3 chr3 180852096 180852744 -37184414 - ERVL-B3 LTR ERVL -3909 1855 1189 * 3337 247 66 7 chr3 180852740 180853695 -37183463 - ERVL-B3 LTR ERVL -4660 1029 2 2688 214 27 8 chr3 180853702 180853719 -37183439 - MLT2B3 LTR ERVL -20 534 519 507 33 0 0 chr3 180853719 180853780 -37183378 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 2688 214 27 8 chr3 180853780 180854285 -37182873 - MLT2B3 LTR ERVL -35 519 2 517 288 52 33 chr3 180854291 180854714 -37182444 - L1MEc LINE L1 -5083 987 557 650 277 102 60 chr3 180855040 180855694 -37181464 - L1MC4 LINE L1 -658 7384 6703 633 201 7 0 chr3 180855702 180855841 -37181317 - L1MA4A LINE L1 0 6303 6164 11507 218 20 33 chr3 180855841 180856365 -37180793 - L1 LINE L1 -1118 5730 5201 1880 137 27 20 chr3 180856365 180856664 -37180494 - AluSx SINE Alu -7 305 5 11507 218 20 33 chr3 180856664 180860266 -37176892 - L1 LINE L1 -1647 5201 1645 22 0 0 0 chr3 180860266 180860288 -37176870 + AT_rich Low_complexity Low_complexity 1 22 0 426 305 118 9 chr3 180860432 180860790 -37176368 + L1M4 LINE L1 1541 2025 -4619 2105 266 92 26 chr3 180860917 180862119 -37175039 + L1M4 LINE L1 2270 3547 -3097 1352 141 55 9 chr3 180862119 180862339 -37174819 + MER30 DNA MER1_type 1 230 0 2105 266 92 26 chr3 180862339 180862720 -37174438 + L1M4 LINE L1 3547 3901 -2743 435 302 74 0 chr3 180862720 180862922 -37174236 + L1M4 LINE L1 4262 4478 -2166 267 241 106 50 chr3 180862938 180863079 -37174079 + L1M4 LINE L1 4542 4690 -1954 229 244 0 0 chr3 180863084 180863129 -37174029 + GA-rich Low_complexity Low_complexity 3 47 0 517 248 83 35 chr3 180863129 180863443 -37173715 + L1M4 LINE L1 4671 4999 -1645 473 261 8 0 chr3 180863470 180863615 -37173543 + L1ME1 LINE L1 6013 6161 -5 21 0 0 0 chr3 180863616 180863637 -37173521 + AT_rich Low_complexity Low_complexity 1 21 0 344 296 93 25 chr3 180863881 180864043 -37173115 - L1M4 LINE L1 -3333 2813 2641 213 253 13 13 chr3 180864069 180864148 -37173010 + (TA)n Simple_repeat Simple_repeat 1 79 0 333 310 11 0 chr3 180864295 180864382 -37172776 - L1MC/D LINE L1 -2208 5600 5513 521 261 0 0 chr3 180864509 180864624 -37172534 + LTR28 LTR ERV1 1 115 -905 1877 192 55 31 chr3 180864635 180865172 -37171986 + MLT2A2 LTR ERVL 1 554 0 879 232 88 70 chr3 180865251 180865932 -37171226 + MER52A LTR ERV1 275 1753 -2 25 0 0 0 chr3 180866019 180866044 -37171114 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr3 180866455 180866487 -37170671 + AT_rich Low_complexity Low_complexity 1 32 0 181 339 77 0 chr3 180866594 180866659 -37170499 + L2 LINE L2 3203 3272 0 370 349 26 16 chr3 180866705 180866894 -37170264 + MIR SINE MIR 72 262 0 194 374 20 27 chr3 180867715 180867862 -37169296 - MIR SINE MIR -42 220 75 29 0 0 0 chr3 180868027 180868056 -37169102 + AT_rich Low_complexity Low_complexity 1 29 0 745 215 13 0 chr3 180868131 180868280 -37168878 - MLT1E3 LTR MaLR 0 624 474 511 263 60 63 chr3 180868299 180868714 -37168444 - HAL1 LINE L1 -1201 1306 893 492 48 0 0 chr3 180869350 180869413 -37167745 + (TC)n Simple_repeat Simple_repeat 2 64 0 210 71 0 0 chr3 180869412 180869440 -37167718 + (TG)n Simple_repeat Simple_repeat 1 28 0 * 1351 233 107 50 chr3 180869468 180869931 -37167227 - MLT2B1 LTR ERVL -19 460 3 206 255 0 0 chr3 180870964 180871015 -37166143 + MIR SINE MIR 153 203 -59 392 311 68 5 chr3 180871626 180871816 -37165342 - MIR SINE MIR 0 262 61 329 343 65 36 chr3 180872253 180872562 -37164596 + L2 LINE L2 2341 2658 -656 284 328 80 80 chr3 180872688 180873002 -37164156 + L2 LINE L2 2869 3182 -90 7866 194 107 9 chr3 180873436 180875032 -37162126 + MER52A LTR ERV1 4 1755 0 2648 163 5 22 chr3 180875032 180875481 -37161677 + MER52A-int LTR ERV1 1 441 -6650 266 167 0 30 chr3 180875481 180875547 -37161611 + CT-rich Low_complexity Low_complexity 1 64 0 5825 156 72 75 chr3 180875547 180875663 -37161495 + MER52A-int LTR ERV1 412 527 -4690 2114 128 0 3 chr3 180875663 180875976 -37161182 + AluSx SINE Alu 1 312 0 5825 156 72 75 chr3 180875976 180877204 -37159954 + MER52A-int LTR ERV1 527 4730 -487 314 89 0 22 chr3 180877210 180877255 -37159903 + HUERS-P2 LTR ERV1 3912 3955 -925 * 8810 148 39 60 chr3 180877253 180877380 -37159778 + HUERS-P2 LTR ERV1 1850 1978 -5283 1945 150 10 0 chr3 180877380 180877673 -37159485 + AluSg1 SINE Alu 1 296 -13 8810 148 39 60 chr3 180877673 180878397 -37158761 + HUERS-P2 LTR ERV1 1978 2716 -4545 2158 89 0 68 chr3 180878397 180878722 -37158436 + AluY SINE Alu 1 303 -8 8810 148 39 60 chr3 180878722 180879605 -37157553 + HUERS-P2 LTR ERV1 2716 3616 -3645 2328 70 10 3 chr3 180879605 180879905 -37157253 + AluY SINE Alu 1 302 -9 8810 148 39 60 chr3 180879905 180880430 -37156728 + HUERS-P2 LTR ERV1 3616 5056 -2205 1392 178 0 4 chr3 180880427 180880663 -37156495 + HUERS-P2 LTR ERV1 3684 3918 -1299 * 1771 143 42 26 chr3 180880654 180881072 -37156086 + HUERS-P2 LTR ERV1 2672 3086 -2 6463 204 165 9 chr3 180881073 180882591 -37154567 + MER52A LTR ERV1 1 1755 0 505 318 76 33 chr3 180884041 180884252 -37152906 - L2 LINE L2 -1 3312 3093 1128 297 48 24 chr3 180884369 180884746 -37152412 + MLT1F1 LTR MaLR 95 480 -87 584 208 48 0 chr3 180884775 180884900 -37152258 + MLT1F1 LTR MaLR 435 565 -2 742 219 0 0 chr3 180884945 180885082 -37152076 - FRAM SINE Alu -13 163 27 232 300 71 0 chr3 180886255 180886325 -37150833 + MLT1I LTR MaLR 130 204 -205 386 184 0 26 chr3 180886330 180886406 -37150752 + MLT1I LTR MaLR 324 397 -12 23 33 0 0 chr3 180886895 180886925 -37150233 + AT_rich Low_complexity Low_complexity 1 30 0 198 295 42 53 chr3 180886989 180887084 -37150074 - L3b LINE CR1 -182 1401 1308 21 57 0 0 chr3 180887226 180887261 -37149897 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr3 180887440 180887461 -37149697 + AT_rich Low_complexity Low_complexity 1 21 0 1598 161 71 3 chr3 180887467 180887778 -37149380 - MER2 DNA MER2_type -10 335 4 31 82 0 0 chr3 180887940 180888013 -37149145 + AT_rich Low_complexity Low_complexity 1 73 0 339 323 0 0 chr3 180888468 180888595 -37148563 - MER103 DNA DNA -3 163 37 616 204 183 38 chr3 180888730 180888916 -37148242 - MER20 DNA MER1_type -6 213 1 5975 56 9 0 chr3 180889183 180889928 -37147230 - L1PA5 LINE L1 -2 6152 5401 1497 41 0 0 chr3 180889925 180890121 -37147037 + L1P LINE L1 5030 5225 -921 * 193 325 56 16 chr3 180890189 180890315 -37146843 + L2 LINE L2 2140 2270 -1044 654 296 63 50 chr3 180890676 180890994 -37146164 - L2 LINE L2 -1 3312 2991 1758 291 57 41 chr3 180890997 180891632 -37145526 - MLT2F LTR ERVL -2 661 17 245 389 27 13 chr3 180891666 180891815 -37145343 - L2 LINE L2 -339 2974 2824 368 267 33 33 chr3 180891961 180892081 -37145077 - MER5B DNA MER1_type 0 178 59 449 210 13 134 chr3 180892912 180893069 -37144089 + MIR SINE MIR 81 218 -44 198 143 0 0 chr3 180893097 180893132 -37144026 + (TATG)n Simple_repeat Simple_repeat 2 36 0 190 224 24 0 chr3 180893159 180893244 -37143914 + (TA)n Simple_repeat Simple_repeat 2 88 0 254 262 155 0 chr3 180894058 180894142 -37143016 - MIR3 SINE MIR -6 202 106 255 246 53 0 chr3 180894467 180894524 -37142634 + L3 LINE CR1 1149 1208 -369 2206 87 30 0 chr3 180895076 180895374 -37141784 - AluSq SINE Alu -6 307 1 487 320 47 0 chr3 180895556 180895706 -37141452 + L2 LINE L2 3116 3272 0 2299 73 3 3 chr3 180895767 180896069 -37141089 - AluY SINE Alu -9 302 1 21 0 0 0 chr3 180896309 180896330 -37140828 + AT_rich Low_complexity Low_complexity 1 21 0 431 310 70 0 chr3 180896638 180896809 -37140349 - MIR SINE MIR -3 259 77 188 325 91 0 chr3 180897179 180897256 -37139902 + MIR SINE MIR 56 139 -123 582 259 135 71 chr3 180898571 180899168 -37137990 - LTR48B LTR ERV1 0 644 4 1815 147 69 20 chr3 180900897 180901244 -37135914 + THE1B LTR MaLR 1 364 0 10955 113 6 3 chr3 180901244 180902818 -37134340 + THE1B-int LTR MaLR 1 1578 -2 2004 114 56 67 chr3 180902828 180902972 -37134186 + THE1B LTR MaLR 9 153 -211 2025 112 0 21 chr3 180902972 180903302 -37133856 - AluSx SINE Alu 0 326 3 2004 114 56 67 chr3 180903302 180903516 -37133642 + THE1B LTR MaLR 153 364 0 904 221 80 80 chr3 180903620 180904171 -37132987 + Charlie2 DNA MER1_type 2306 2856 -6 356 82 0 0 chr3 180904800 180904849 -37132309 + L1MA1 LINE L1 5423 5471 -833 345 140 0 0 chr3 180904847 180904904 -37132254 - L1M1 LINE L1 -770 5532 5476 * 2097 99 31 0 chr3 180904907 180905229 -37131929 + L1MA1 LINE L1 5971 6302 0 214 299 15 15 chr3 180905314 180905381 -37131777 - MIR SINE MIR -13 249 183 289 303 8 59 chr3 180905722 180905841 -37131317 + MIR SINE MIR 150 262 0 22 56 0 0 chr3 180906015 180906051 -37131107 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr3 180906947 180906975 -37130183 + AT_rich Low_complexity Low_complexity 1 28 0 201 291 0 0 chr3 180907282 180907337 -37129821 + GA-rich Low_complexity Low_complexity 2 56 0 2179 110 0 0 chr3 180907438 180907729 -37129429 - AluSx SINE Alu -21 291 1 21 36 0 0 chr3 180907847 180907875 -37129283 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr3 180908067 180908112 -37129046 + AT_rich Low_complexity Low_complexity 1 45 0 2789 288 59 71 chr3 180908133 180909841 -37127317 + HAL1 LINE L1 3 1689 -818 244 294 137 56 chr3 180910046 180910352 -37126806 + HAL1b LINE L1 164 494 -854 233 282 108 62 chr3 180910636 180910759 -37126399 - MLT1J LTR MaLR -210 301 164 1900 148 0 16 chr3 180910759 180911062 -37126096 + AluJo SINE Alu 1 298 -14 233 282 108 62 chr3 180911062 180911133 -37126025 - MLT1J LTR MaLR -347 164 98 24 77 0 0 chr3 180911638 180911690 -37125468 + AT_rich Low_complexity Low_complexity 1 52 0 209 125 0 21 chr3 180912481 180912529 -37124629 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 1279 254 49 35 chr3 180912607 180913117 -37124041 - L1ME2 LINE L1 -45 6119 5598 1124 233 64 35 chr3 180913616 180914020 -37123138 - LTR52 LTR ERVL -3 418 3 218 352 56 24 chr3 180914165 180914288 -37122870 + MIR SINE MIR 29 155 -107 421 338 26 0 chr3 180914288 180914442 -37122716 + MIR SINE MIR 2 159 -103 242 321 0 0 chr3 180914981 180915062 -37122096 + MIR SINE MIR 151 231 -31 22 0 0 0 chr3 180915491 180915513 -37121645 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr3 180916106 180916127 -37121031 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 347 162 27 0 chr3 180917395 180917469 -37119689 + GA-rich Low_complexity Low_complexity 3 78 0 632 134 252 0 chr3 180917483 180917602 -37119556 + AluSq SINE Alu 6 154 -159 596 127 9 64 chr3 180917600 180917620 -37119538 - AluSg SINE Alu -203 107 87 * 6735 65 42 0 chr3 180917620 180918481 -37118677 + MER11D LTR ERVK 1 897 0 596 127 9 64 chr3 180918481 180918570 -37118588 - AluSg SINE Alu -223 87 4 23 0 0 0 chr3 180918617 180918640 -37118518 + AT_rich Low_complexity Low_complexity 1 23 0 252 254 30 0 chr3 180919239 180919306 -37117852 + L1MEd LINE L1 314 382 -5737 4480 78 0 0 chr3 180919313 180919899 -37117259 - THE1B-int LTR MaLR -994 586 1 2206 136 19 30 chr3 180919899 180920267 -37116891 - THE1B LTR MaLR 0 364 1 2048 132 0 0 chr3 180920489 180920776 -37116382 + AluSc SINE Alu 1 287 -22 4793 249 50 16 chr3 180920795 180922159 -37114999 + L1MA9 LINE L1 2448 3874 -2272 2121 132 7 0 chr3 180922159 180922469 -37114689 - AluSx SINE Alu 0 312 1 4793 249 50 16 chr3 180922469 180922689 -37114469 + L1MA9 LINE L1 3874 4085 -2061 1322 196 110 26 chr3 180922674 180922984 -37114174 + L1MA9 LINE L1 5454 5797 -515 * 258 32 0 0 chr3 180922984 180923015 -37114143 + (CA)n Simple_repeat Simple_repeat 2 32 0 1322 196 110 26 chr3 180923015 180923050 -37114108 + L1MA9 LINE L1 5797 5828 -484 1244 204 19 19 chr3 180923051 180923364 -37113794 + L1MA9 LINE L1 5990 6302 -10 1040 248 63 44 chr3 180924333 180924696 -37112462 + MLT1A2 LTR MaLR 1 370 -4 285 295 77 0 chr3 180925078 180925156 -37112002 - L2 LINE L2 -38 3234 3151 341 43 21 0 chr3 180925689 180925736 -37111422 + (TTTTC)n Simple_repeat Simple_repeat 2 49 0 2578 214 43 0 chr3 180926166 180926727 -37110431 - L1MB1 LINE L1 -280 5888 5304 1385 162 57 0 chr3 180926727 180926992 -37110166 + L1MB1 LINE L1 5889 6168 0 428 251 86 25 chr3 180927224 180927387 -37109771 + MER105 DNA DNA 1 173 -31 2049 119 3 35 chr3 180927945 180928256 -37108902 - AluSg SINE Alu -9 301 1 203 262 49 0 chr3 180928388 180928449 -37108709 + L2 LINE L2 1374 1437 -1877 318 165 0 0 chr3 180928711 180928790 -37108368 + (TA)n Simple_repeat Simple_repeat 2 80 0 2383 70 0 3 chr3 180930680 180930992 -37106166 + AluY SINE Alu 1 311 0 2105 132 0 0 chr3 180931893 180932188 -37104970 - AluSx SINE Alu -17 295 1 21 0 0 0 chr3 180932191 180932212 -37104946 + AT_rich Low_complexity Low_complexity 1 21 0 247 254 0 0 chr3 180932218 180932285 -37104873 - L1MA10 LINE L1 -12 6322 6256 2130 141 0 0 chr3 180932305 180932611 -37104547 - AluSx SINE Alu -6 306 1 2069 279 26 26 chr3 180932612 180933390 -37103768 - L1ME1 LINE L1 -54 6112 5335 267 259 0 0 chr3 180933493 180933578 -37103580 + (TA)n Simple_repeat Simple_repeat 1 85 0 221 225 0 0 chr3 180933583 180933623 -37103535 + (TG)n Simple_repeat Simple_repeat 2 41 0 339 61 20 0 chr3 180933774 180933823 -37103335 - L1PA16 LINE L1 -9 6157 6108 4490 172 44 13 chr3 180933823 180934877 -37102281 + L1PA16 LINE L1 5037 6117 -49 1272 277 14 18 chr3 180934873 180935372 -37101786 - L1ME1 LINE L1 -809 5337 4841 * 1596 195 11 54 chr3 180935372 180935623 -37101535 + MLT1A1 LTR MaLR 1 232 -133 2215 103 3 3 chr3 180935623 180935924 -37101234 - AluSc SINE Alu -8 301 1 1596 195 11 54 chr3 180935924 180936041 -37101117 + MLT1A1 LTR MaLR 232 353 -12 629 212 34 0 chr3 180936053 180936199 -37100959 - L1ME1 LINE L1 -1301 4845 4695 22 0 0 0 chr3 180937200 180937222 -37099936 + AT_rich Low_complexity Low_complexity 1 22 0 228 135 0 0 chr3 180937358 180937395 -37099763 + (CA)n Simple_repeat Simple_repeat 2 38 0 190 165 0 59 chr3 180937375 180937460 -37099698 + (CATATA)n Simple_repeat Simple_repeat 1 80 0 * 801 304 51 7 chr3 180937463 180937759 -37099399 + L1MEc LINE L1 123 431 -5965 12223 125 24 19 chr3 180937839 180939778 -37097380 - L1P LINE L1 -4187 1959 11 21 0 0 0 chr3 180939899 180939920 -37097238 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 180940092 180940113 -37097045 + AT_rich Low_complexity Low_complexity 1 21 0 1507 233 37 23 chr3 180940483 180940917 -37096241 + L1MB8 LINE L1 4558 4997 -1149 2177 184 77 118 chr3 180940923 180941675 -37095483 - LTR8A LTR ERV1 -6 721 1 2573 197 45 48 chr3 180941675 180942595 -37094563 + L1MB8 LINE L1 4994 5914 -264 513 177 0 0 chr3 180942722 180942818 -37094340 - L1M4 LINE L1 -424 5754 5659 1247 162 7 49 chr3 180942818 180943089 -37094069 + L1MB8 LINE L1 5901 6172 -6 35 72 0 40 chr3 180943320 180943445 -37093713 + AT_rich Low_complexity Low_complexity 1 120 0 23 0 0 0 chr3 180943811 180943834 -37093324 + AT_rich Low_complexity Low_complexity 1 23 0 1073 129 0 0 chr3 180944925 180945072 -37092086 - AluSg SINE Alu -19 293 147 4552 126 148 30 chr3 180945072 180946076 -37091082 + pTR5 LTR ERV1 743 2025 -413 362 188 62 31 chr3 180946076 180946172 -37090986 + LTR30 LTR ERV1 544 642 -80 1532 97 5 5 chr3 180946175 180946392 -37090766 + pTR5 LTR ERV1 172 388 -2050 873 156 7 0 chr3 180946392 180946527 -37090631 - AluSg SINE Alu -158 152 17 264 273 61 10 chr3 180946883 180946982 -37090176 - L1ME LINE L1 -422 5699 5596 21 0 0 0 chr3 180947261 180947282 -37089876 + AT_rich Low_complexity Low_complexity 1 21 0 219 241 17 17 chr3 180948221 180948279 -37088879 - MER5B DNA MER1_type -119 59 2 21 0 0 0 chr3 180948316 180948337 -37088821 + AT_rich Low_complexity Low_complexity 1 21 0 483 160 90 0 chr3 180948429 180948529 -37088629 + MER3 DNA MER1_type 53 161 -48 41 36 0 0 chr3 180948537 180948592 -37088566 + AT_rich Low_complexity Low_complexity 1 55 0 812 189 242 13 chr3 180948593 180948911 -37088247 + MER3 DNA MER1_type 2234 2624 0 1654 290 39 31 chr3 180949092 180949678 -37087480 - MLT1E LTR MaLR 0 593 3 292 270 84 44 chr3 180950158 180950384 -37086774 - L1M4 LINE L1 -540 5630 5396 443 345 37 49 chr3 180950426 180950751 -37086407 - L1M4 LINE L1 -786 5360 5040 648 264 238 7 chr3 180951210 180951487 -37085671 + MLT1I LTR MaLR 61 401 -8 831 301 33 18 chr3 180951537 180951813 -37085345 - MLT1I LTR MaLR -10 399 120 22 0 0 0 chr3 180952549 180952571 -37084587 + AT_rich Low_complexity Low_complexity 1 22 0 31 0 0 0 chr3 180954819 180954850 -37082308 + AT_rich Low_complexity Low_complexity 1 31 0 355 344 108 0 chr3 180954952 180955147 -37082011 - L2 LINE L2 -707 2607 2392 22 35 0 0 chr3 180955197 180955226 -37081932 + AT_rich Low_complexity Low_complexity 1 29 0 298 342 114 39 chr3 180956477 180956758 -37080400 - L2 LINE L2 -789 2525 2224 1104 71 0 0 chr3 180956905 180957045 -37080113 - MER4E LTR ERV1 -626 140 1 38 0 0 0 chr3 180957080 180957118 -37080040 + AT_rich Low_complexity Low_complexity 1 38 0 242 216 0 0 chr3 180957144 180957195 -37079963 - L1M4 LINE L1 -1162 4984 4934 2468 184 103 0 chr3 180957195 180957789 -37079369 + L1 LINE L1 3094 3748 -2398 1351 203 11 39 chr3 180958019 180958305 -37078853 - AluJo SINE Alu -28 284 7 471 300 32 37 chr3 180959671 180959861 -37077297 - MLT1J LTR MaLR -322 189 1 222 237 158 13 chr3 180960222 180960298 -37076860 - L2 LINE L2 0 3272 3186 409 352 143 29 chr3 180960882 180961427 -37075731 - L2 LINE L2 -348 2966 2360 2003 102 0 0 chr3 180961573 180961838 -37075320 + AluY SINE Alu 35 299 -12 223 223 21 43 chr3 180961945 180962039 -37075119 + (TATATG)n Simple_repeat Simple_repeat 5 96 0 685 297 63 24 chr3 180962054 180962387 -37074771 - LTR52 LTR ERVL -7 414 69 2193 150 28 19 chr3 180962541 180962902 -37074256 - THE1B LTR MaLR 0 364 1 10920 122 5 0 chr3 180962902 180964474 -37072684 - THE1B-int LTR MaLR 0 1580 1 1518 172 144 28 chr3 180964474 180964800 -37072358 - THE1B LTR MaLR 0 364 1 10952 114 15 3 chr3 180964800 180966324 -37070834 + THE1B-int LTR MaLR 39 1580 0 1167 177 71 29 chr3 180966324 180966639 -37070519 + THE1B LTR MaLR 1 355 0 344 47 0 0 chr3 180966639 180966682 -37070476 - THE1B-int LTR MaLR -1537 43 1 2132 123 53 36 chr3 180966682 180967040 -37070118 - THE1B LTR MaLR 0 364 1 208 297 0 11 chr3 180967281 180967372 -37069786 + (TA)n Simple_repeat Simple_repeat 1 90 0 425 229 107 29 chr3 180967800 180967940 -37069218 + LTR40a LTR ERVL 1 151 -368 785 314 34 25 chr3 180968085 180968407 -37068751 + LTR40a LTR ERVL 180 504 -15 2242 204 131 37 chr3 180968438 180969145 -37068013 + LTR1B LTR ERV1 2 778 -7 20014 190 58 51 chr3 180969268 180973624 -37063534 + LTR1B-int LTR ERV1 250 4623 -2468 1504 192 46 11 chr3 180973624 180973905 -37063253 - AluSx SINE Alu -17 295 5 20014 190 58 51 chr3 180973905 180974002 -37063156 + LTR1B-int LTR ERV1 4623 4718 -2373 189 0 0 0 chr3 180974002 180974023 -37063135 + (TA)n Simple_repeat Simple_repeat 2 22 0 1805 113 75 17 chr3 180974023 180974316 -37062842 - MER4D LTR ERV1 -593 310 1 793 289 149 21 chr3 180974349 180974525 -37062633 - L1ME3A LINE L1 -159 6405 6253 928 228 63 0 chr3 180974525 180974731 -37062427 - MER20 DNA MER1_type 0 219 1 793 289 149 21 chr3 180974731 180975084 -37062074 - L1ME3A LINE L1 -311 6253 5808 599 271 121 16 chr3 180975211 180975576 -37061582 - L1ME3A LINE L1 -866 5674 5272 192 40 0 0 chr3 180975805 180975830 -37061328 + (TC)n Simple_repeat Simple_repeat 2 26 0 1540 161 96 37 chr3 180975921 180976275 -37060883 + THE1C LTR MaLR 1 375 0 222 127 0 55 chr3 180976541 180976596 -37060562 + (TAAAAA)n Simple_repeat Simple_repeat 5 56 0 389 173 50 50 chr3 180977060 180977239 -37059919 + (TA)n Simple_repeat Simple_repeat 1 179 0 6250 151 64 3 chr3 180977239 180978400 -37058758 - Tigger3b DNA MER2_type 0 1231 1 210 71 0 0 chr3 180978403 180978431 -37058727 + (GA)n Simple_repeat Simple_repeat 1 28 0 324 0 0 0 chr3 180978521 180978557 -37058601 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 28 48 0 0 chr3 180980769 180980811 -37056347 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr3 180981247 180981268 -37055890 + AT_rich Low_complexity Low_complexity 1 21 0 269 336 53 53 chr3 180981797 180982062 -37055096 + MER110-int LTR ERV1 4144 4408 -239 24 0 0 0 chr3 180982671 180982695 -37054463 + AT_rich Low_complexity Low_complexity 1 24 0 * 1600 264 72 33 chr3 180982675 180983641 -37053517 - L1ME3A LINE L1 -1587 4953 3950 201 217 29 29 chr3 180983705 180983774 -37053384 + T-rich Low_complexity Low_complexity 3 71 0 580 287 55 10 chr3 180983852 180984235 -37052923 - L1ME3A LINE L1 -2897 3643 3244 760 299 121 18 chr3 180984304 180985158 -37052000 - L1ME3A LINE L1 -3417 3123 2216 231 242 11 33 chr3 180985229 180985320 -37051838 - L1ME3A LINE L1 -4512 2028 1940 1578 160 44 24 chr3 180985368 180985662 -37051496 - AluSx SINE Alu -11 301 2 302 322 82 33 chr3 180988779 180988962 -37048196 - MIR SINE MIR -6 256 65 4672 188 16 48 chr3 180989536 180989630 -37047528 + L1 LINE L1 3900 3995 -2151 807 183 0 0 chr3 180989630 180989761 -37047397 + FLAM_C SINE Alu 1 131 -2 4672 188 16 48 chr3 180989761 180990817 -37046341 + L1 LINE L1 3995 5013 -1133 180 329 7 103 chr3 180991150 180991197 -37045961 + MIR3 SINE MIR 3 53 -155 1607 178 0 0 chr3 180991197 180991461 -37045697 - AluJo SINE Alu -12 300 37 180 329 7 103 chr3 180991461 180991559 -37045599 + MIR3 SINE MIR 53 134 -74 1713 186 0 10 chr3 180991559 180991870 -37045288 - AluJb SINE Alu -4 308 1 21 0 0 0 chr3 180991877 180991898 -37045260 + AT_rich Low_complexity Low_complexity 1 21 0 1205 144 36 14 chr3 181092114 181092336 -36944822 - MLT2C2 LTR ERVL -237 227 1 22 0 0 0 chr3 181092843 181092865 -36944293 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr3 181093787 181093816 -36943342 + AT_rich Low_complexity Low_complexity 1 29 0 303 28 0 0 chr3 181094206 181094242 -36942916 + (TG)n Simple_repeat Simple_repeat 2 37 0 229 294 9 73 chr3 181094800 181094909 -36942249 - MER58B DNA MER1_type -14 327 226 352 256 284 0 chr3 181094943 181095119 -36942039 - MER58B DNA MER1_type -115 226 1 23 78 0 0 chr3 181095566 181095617 -36941541 + AT_rich Low_complexity Low_complexity 1 51 0 2419 126 3 0 chr3 181095709 181096074 -36941084 + L1PA15 LINE L1 5800 6165 0 25 0 0 0 chr3 181096513 181096538 -36940620 + AT_rich Low_complexity Low_complexity 1 25 0 258 365 10 0 chr3 181096795 181096899 -36940259 + L2 LINE L2 3190 3294 -19 600 143 0 0 chr3 181096900 181096991 -36940167 - AluSp/q SINE Alu -24 289 199 5576 178 15 36 chr3 181096995 181098544 -36938614 + L1MA3 LINE L1 4791 6305 0 30 45 0 0 chr3 181099274 181099318 -36937840 + AT_rich Low_complexity Low_complexity 1 44 0 512 150 31 0 chr3 181100073 181100200 -36936958 + (TA)n Simple_repeat Simple_repeat 2 132 0 1326 238 0 18 chr3 181101226 181101512 -36935646 + AluJb SINE Alu 6 286 -26 369 0 0 0 chr3 181101661 181101702 -36935456 + (TG)n Simple_repeat Simple_repeat 2 42 0 25 31 0 0 chr3 181102770 181102802 -36934356 + AT_rich Low_complexity Low_complexity 1 32 0 199 341 12 0 chr3 181103772 181103857 -36933301 - MIR SINE MIR -24 238 153 246 32 0 0 chr3 181103976 181104007 -36933151 + (CA)n Simple_repeat Simple_repeat 2 32 0 1758 242 144 16 chr3 181104055 181104856 -36932302 - L1ME2 LINE L1 -170 5994 5081 1682 144 53 11 chr3 181104891 181105175 -36931983 + AluSx SINE Alu 1 296 -16 611 24 0 24 chr3 181105179 181105261 -36931897 + (GAAA)n Simple_repeat Simple_repeat 3 82 0 10365 42 4 0 chr3 181105282 181107331 -36929827 - L1PA5 LINE L1 -1 6153 4099 842 11 0 0 chr3 181107332 181107427 -36929731 + L1PA5 LINE L1 4001 4095 -2051 1254 219 29 32 chr3 181107427 181107769 -36929389 + MLT1A1 LTR MaLR 25 365 0 1801 267 99 39 chr3 181107776 181108897 -36928261 - L1ME2 LINE L1 -1075 5071 3884 1136 229 19 40 chr3 181108926 181109452 -36927706 - L1MB8 LINE L1 0 6414 5797 23 54 0 0 chr3 181109904 181109941 -36927217 + AT_rich Low_complexity Low_complexity 1 37 0 7976 266 60 21 chr3 181111641 181115823 -36921335 - L1MB8 LINE L1 -587 5827 1502 631 163 122 27 chr3 181116427 181116574 -36920584 - FRAM SINE Alu -1 175 15 202 313 60 24 chr3 181116794 181116877 -36920281 + L2 LINE L2 3190 3275 -38 249 291 25 0 chr3 181119704 181119783 -36917375 + MLT1F LTR MaLR 140 220 -329 450 256 152 35 chr3 181119846 181120076 -36917082 + MLT1F LTR MaLR 286 542 0 289 317 75 17 chr3 181121489 181121609 -36915549 + MER5A DNA MER1_type 57 183 -6 22 56 0 0 chr3 181121954 181121990 -36915168 + AT_rich Low_complexity Low_complexity 1 36 0 516 352 14 18 chr3 181122350 181122634 -36914524 - LTR33 LTR ERVL -220 301 19 826 304 88 68 chr3 181123088 181123445 -36913713 - ERVL LTR ERVL -3180 2584 2236 453 66 0 0 chr3 181123445 181123506 -36913652 + (CA)n Simple_repeat Simple_repeat 2 62 0 826 304 88 68 chr3 181123506 181123917 -36913241 - ERVL LTR ERVL -3528 2236 1800 707 343 94 23 chr3 181123943 181124413 -36912745 - LTR33 LTR ERVL 0 521 19 1272 124 5 0 chr3 181126193 181126395 -36910763 - L1PA14 LINE L1 -2 6159 5957 269 298 91 8 chr3 181126751 181126872 -36910286 - LTR16B LTR ERVL -333 131 1 616 318 38 8 chr3 181127191 181127427 -36909731 - MLT1J LTR MaLR -249 262 20 26 50 0 0 chr3 181128638 181128678 -36908480 + AT_rich Low_complexity Low_complexity 1 40 0 303 305 12 0 chr3 181128867 181128949 -36908209 - LTR16A LTR ERVL -251 199 117 289 273 37 90 chr3 181129175 181129438 -36907720 - ERVL LTR ERVL -202 5312 5091 22 0 0 0 chr3 181131061 181131083 -36906075 + AT_rich Low_complexity Low_complexity 1 22 0 325 335 140 33 chr3 181131606 181132000 -36905158 - L2 LINE L2 -1381 1933 1498 26 0 0 0 chr3 181134098 181134124 -36903034 + AT_rich Low_complexity Low_complexity 1 26 0 224 306 12 0 chr3 181135453 181135538 -36901620 + GA-rich Low_complexity Low_complexity 2 87 0 1352 172 49 24 chr3 181136629 181136945 -36900213 - MER61B LTR ERV1 -13 412 1 1164 193 49 94 chr3 181137045 181137728 -36899430 + L1P4 LINE L1 4955 5604 -570 5711 127 36 38 chr3 181137918 181139157 -36898001 + L1PA11 LINE L1 4955 6172 -2 339 305 11 52 chr3 181142370 181142544 -36894614 + MER110-int LTR ERV1 2699 2865 -1782 362 322 73 34 chr3 181143403 181143636 -36893522 + MER70-int LTR ERVL 4433 4674 -349 * 1866 274 66 10 chr3 181143545 181144168 -36892990 + MER110-int LTR ERV1 4214 4871 0 25 31 0 0 chr3 181145103 181145135 -36892023 + AT_rich Low_complexity Low_complexity 1 32 0 400 373 81 22 chr3 181145879 181146150 -36891008 - LTR16A LTR ERVL -53 397 111 414 264 39 95 chr3 181146406 181146637 -36890521 + MER20 DNA MER1_type 2 219 0 349 185 0 87 chr3 181147033 181147125 -36890033 - MER41B LTR ERV1 -88 547 464 250 297 8 55 chr3 181148061 181148189 -36888969 + L1ME LINE L1 5606 5727 -394 1281 77 6 0 chr3 181148312 181148480 -36888678 - AluYa5 SINE Alu -20 291 123 21 36 0 0 chr3 181148653 181148681 -36888477 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 181148819 181148841 -36888317 + AT_rich Low_complexity Low_complexity 1 22 0 679 271 17 0 chr3 181149138 181149319 -36887839 - MER97c DNA MER1_type? -906 184 1 4874 134 4 7 chr3 181150649 181151423 -36885735 + L1PA13 LINE L1 5392 6163 0 23 0 0 0 chr3 181151598 181151621 -36885537 + AT_rich Low_complexity Low_complexity 1 23 0 515 262 100 10 chr3 181151877 181152159 -36884999 - MLT1E LTR MaLR -5 588 201 344 330 20 0 chr3 181153073 181153173 -36883985 - MER5A DNA MER1_type -79 110 9 1667 210 16 13 chr3 181153226 181153602 -36883556 - L1PB4 LINE L1 -1 6155 5779 595 283 126 78 chr3 181153765 181154250 -36882908 - L2 LINE L2 -1430 1884 1377 199 241 176 19 chr3 181154156 181154264 -36882894 - MER5C DNA MER1_type -182 142 18 * 1860 192 18 16 chr3 181154783 181155163 -36881995 - MLT1B LTR MaLR -9 381 1 1706 114 92 0 chr3 181155787 181156059 -36881099 + AluSq SINE Alu 1 297 -16 188 286 207 50 chr3 181156089 181156229 -36880929 + L3b LINE CR1 1231 1392 -191 382 327 55 11 chr3 181156913 181157192 -36879966 + L1MC4a LINE L1 5568 5808 -313 3668 182 31 35 chr3 181157495 181158016 -36879142 - L1MA6 LINE L1 -9 6291 5773 225 0 0 0 chr3 181158016 181158041 -36879117 + (TG)n Simple_repeat Simple_repeat 2 26 0 3668 182 31 35 chr3 181158041 181158358 -36878800 - L1MA6 LINE L1 -527 5773 5456 265 189 0 0 chr3 181158438 181158491 -36878667 - L2 LINE L2 0 3313 3261 25 31 0 0 chr3 181159269 181159301 -36877857 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr3 181159335 181159356 -36877802 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr3 181159595 181159626 -36877532 + AT_rich Low_complexity Low_complexity 1 31 0 536 309 53 21 chr3 181160085 181160370 -36876788 - MER20B DNA MER1_type -467 316 23 423 98 0 0 chr3 181160465 181160526 -36876632 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 1028 243 78 23 chr3 181161855 181162201 -36874957 + MLT1A1 LTR MaLR 1 365 0 1288 198 53 9 chr3 181164050 181164435 -36872723 + MER70B LTR ERVL 1 472 0 2308 165 26 19 chr3 181165708 181166133 -36871025 + MSTA LTR MaLR 1 428 0 930 253 4 25 chr3 181167060 181167301 -36869857 + LTR40a LTR ERVL 7 242 -277 432 200 6 17 chr3 181167619 181167725 -36869433 - L1M1 LINE L1 -567 5735 5634 197 33 33 0 chr3 181167765 181167795 -36869363 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1141 248 23 0 chr3 181167805 181168071 -36869087 - AluJo SINE Alu -40 272 1 867 189 6 0 chr3 181168081 181168240 -36868918 - L1M1 LINE L1 -573 5595 5436 * 1299 193 21 57 chr3 181168235 181168567 -36868591 + L1MA10 LINE L1 6013 6332 -2 249 189 0 0 chr3 181168734 181168787 -36868371 + (CAA)n Simple_repeat Simple_repeat 3 55 0 182 348 165 26 chr3 181170637 181170988 -36866170 + L2 LINE L2 2004 2403 -911 1633 143 74 43 chr3 181171000 181171513 -36865645 + MER51A LTR ERV1 2 618 -16 34 24 0 0 chr3 181172905 181172946 -36864212 + AT_rich Low_complexity Low_complexity 1 41 0 29 94 0 0 chr3 181173186 181173271 -36863887 + AT_rich Low_complexity Low_complexity 1 85 0 26 30 0 0 chr3 181173457 181173490 -36863668 + AT_rich Low_complexity Low_complexity 1 33 0 426 20 0 0 chr3 181173499 181173550 -36863608 + (CA)n Simple_repeat Simple_repeat 2 52 0 259 281 99 0 chr3 181174294 181174415 -36862743 + HAL1 LINE L1 1650 1782 -725 222 222 0 0 chr3 181174625 181174679 -36862479 + A-rich Low_complexity Low_complexity 1 54 0 23 33 0 0 chr3 181174844 181174874 -36862284 + AT_rich Low_complexity Low_complexity 1 30 0 273 75 0 0 chr3 181175011 181175051 -36862107 + (TA)n Simple_repeat Simple_repeat 1 40 0 314 273 22 82 chr3 181175384 181175567 -36861591 + HAL1b LINE L1 758 929 -419 1993 119 19 22 chr3 181177146 181177457 -36859701 - AluSx SINE Alu -2 310 1 1227 230 77 0 chr3 181177896 181178059 -36859099 - AluJb SINE Alu -5 297 103 224 0 65 0 chr3 181178059 181178090 -36859068 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1227 230 77 0 chr3 181178090 181178200 -36858958 - AluJb SINE Alu -199 103 3 30481 24 0 0 chr3 181178384 181182806 -36854352 + L1PA2 LINE L1 1727 6150 -5 218 200 46 0 chr3 181184370 181184435 -36852723 + (TA)n Simple_repeat Simple_repeat 1 68 0 209 415 0 0 chr3 181184498 181184604 -36852554 - L2 LINE L2 -244 3069 2964 378 0 0 0 chr3 181185853 181185895 -36851263 + (CA)n Simple_repeat Simple_repeat 2 43 0 4464 262 15 8 chr3 181186426 181187700 -36849458 - L1P LINE L1 -2027 4119 2837 22 0 0 0 chr3 181188119 181188141 -36849017 + AT_rich Low_complexity Low_complexity 1 22 0 441 360 112 33 chr3 181188147 181188719 -36848439 + HAL1 LINE L1 1181 1797 -710 22 35 0 0 chr3 181188942 181188971 -36848187 + AT_rich Low_complexity Low_complexity 1 29 0 300 326 23 47 chr3 181188995 181189167 -36847991 + HAL1b LINE L1 746 913 -435 22 35 0 0 chr3 181190992 181191021 -36846137 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr3 181192285 181192310 -36844848 + AT_rich Low_complexity Low_complexity 1 25 0 269 261 22 33 chr3 181192760 181192852 -36844306 - L1MEd LINE L1 -4862 1257 1167 259 277 128 28 chr3 181193317 181193458 -36843700 - MLT1K LTR MaLR -145 443 289 403 356 55 23 chr3 181193638 181193857 -36843301 - MLT1K LTR MaLR -361 227 2 21 36 0 0 chr3 181193910 181193938 -36843220 + AT_rich Low_complexity Low_complexity 1 28 0 764 280 76 15 chr3 181194105 181194369 -36842789 + MLT1I LTR MaLR 106 385 -24 1502 195 4 4 chr3 181194441 181194718 -36842440 + AluJb SINE Alu 6 282 -30 201 108 0 0 chr3 181194718 181194755 -36842403 + (TC)n Simple_repeat Simple_repeat 2 38 0 366 23 0 0 chr3 181194768 181194811 -36842347 + (TA)n Simple_repeat Simple_repeat 1 43 0 204 40 0 0 chr3 181194810 181194835 -36842323 + (TG)n Simple_repeat Simple_repeat 2 26 0 * 30 59 0 0 chr3 181194851 181194902 -36842256 + AT_rich Low_complexity Low_complexity 1 51 0 35 98 0 0 chr3 181197584 181197696 -36839462 + AT_rich Low_complexity Low_complexity 1 112 0 406 302 26 105 chr3 181198287 181198384 -36838774 - MLT1I LTR MaLR -73 336 233 219 36 0 0 chr3 181198384 181198412 -36838746 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 406 302 26 105 chr3 181198412 181198442 -36838716 - MLT1I LTR MaLR -176 233 202 2243 145 31 14 chr3 181198442 181198800 -36838358 + THE1B LTR MaLR 1 364 0 9571 125 38 18 chr3 181198800 181200349 -36836809 + THE1B-int LTR MaLR 1 1580 0 1865 163 54 14 chr3 181200349 181200699 -36836459 + THE1B LTR MaLR 1 364 0 406 302 26 105 chr3 181200699 181200873 -36836285 - MLT1I LTR MaLR -204 205 56 416 150 0 10 chr3 181201814 181201914 -36835244 + (GAA)n Simple_repeat Simple_repeat 1 99 0 21 36 0 0 chr3 181201922 181201950 -36835208 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr3 181202559 181202588 -36834570 + AT_rich Low_complexity Low_complexity 1 29 0 24 77 0 0 chr3 181203611 181203663 -36833495 + AT_rich Low_complexity Low_complexity 1 52 0 21 36 0 0 chr3 181203955 181203983 -36833175 + AT_rich Low_complexity Low_complexity 1 28 0 5875 80 20 8 chr3 181204430 181205263 -36831895 + L1PA8A LINE L1 5287 6129 -2 1470 123 4 0 chr3 181205314 181205541 -36831617 + L1MA1 LINE L1 6074 6301 -1 207 0 0 0 chr3 181205681 181205704 -36831454 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2159 72 0 24 chr3 181205707 181206000 -36831158 - AluY SINE Alu -25 286 1 569 310 29 0 chr3 181206210 181206381 -36830777 + MIR SINE MIR 2 177 -85 1260 291 54 29 chr3 181206406 181206890 -36830268 + Charlie1a DNA MER1_type 8 503 -952 1364 98 11 0 chr3 181206912 181207095 -36830063 + AluSp SINE Alu 129 313 0 1307 239 84 18 chr3 181207107 181207617 -36829541 + Charlie1a DNA MER1_type 520 1063 -392 216 326 22 11 chr3 181207745 181207837 -36829321 + L2 LINE L2 3221 3313 0 460 270 87 8 chr3 181207871 181207997 -36829161 - L1MDa LINE L1 -5904 636 501 312 27 0 0 chr3 181207999 181208036 -36829122 + (TG)n Simple_repeat Simple_repeat 2 38 0 1265 135 18 165 chr3 181208134 181208377 -36828781 - pTR5 LTR ERV1 -143 2295 172 339 194 0 0 chr3 181208378 181208450 -36828708 - LTR30 LTR ERV1 -105 617 546 4043 152 80 35 chr3 181208452 181209437 -36827721 - pTR5 LTR ERV1 -433 1682 118 976 224 33 46 chr3 181209437 181209678 -36827480 - L1MDa LINE L1 -6286 254 17 372 268 0 0 chr3 181211000 181211071 -36826087 - MER5B DNA MER1_type -1 177 107 685 298 49 0 chr3 181211188 181211393 -36825765 - MIR SINE MIR -46 216 2 23 0 0 0 chr3 181211456 181211479 -36825679 + AT_rich Low_complexity Low_complexity 1 23 0 2165 118 40 35 chr3 181211808 181212181 -36824977 - THE1C LTR MaLR 0 375 1 931 225 48 14 chr3 181212903 181213321 -36823837 - MLT1D LTR MaLR -8 497 5 351 259 5 139 chr3 181213908 181214124 -36823034 - MLT1J LTR MaLR -214 297 111 759 43 0 0 chr3 181214290 181214384 -36822774 + L1PA5 LINE L1 6059 6152 -2 228 35 0 0 chr3 181215843 181215872 -36821286 + (CA)n Simple_repeat Simple_repeat 2 30 0 282 280 0 0 chr3 181217335 181217410 -36819748 - MIR SINE MIR -23 239 165 404 331 65 6 chr3 181217419 181217588 -36819570 + MIR SINE MIR 16 194 -68 328 279 25 57 chr3 181217631 181217753 -36819405 - MIR SINE MIR -51 157 40 770 161 0 0 chr3 181218709 181218827 -36818331 + AluSq/x SINE Alu 3 120 -192 607 171 51 8 chr3 181218823 181218940 -36818218 + AluSc SINE Alu 169 290 -19 * 28 29 0 0 chr3 181220318 181220353 -36816805 + AT_rich Low_complexity Low_complexity 1 35 0 819 229 99 7 chr3 181220521 181220805 -36816353 - MER33 DNA MER1_type -14 310 1 21 0 0 0 chr3 181221890 181221911 -36815247 + AT_rich Low_complexity Low_complexity 1 21 0 190 406 42 0 chr3 181222177 181222273 -36814885 - L2 LINE L2 -37 3235 3136 2292 71 17 0 chr3 181222927 181223054 -36814104 + AluY SINE Alu 1 124 -187 180 0 0 0 chr3 181223054 181223074 -36814084 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 2292 71 17 0 chr3 181223074 181223242 -36813916 + AluY SINE Alu 124 301 -10 350 252 0 8 chr3 181223254 181223381 -36813777 + (TA)n Simple_repeat Simple_repeat 1 126 0 379 318 73 73 chr3 181223425 181223824 -36813334 + MLT1I LTR MaLR 11 409 0 1271 215 90 35 chr3 181224217 181224561 -36812597 + MLT1C LTR MaLR 105 467 0 21 57 0 0 chr3 181226663 181226698 -36810460 + AT_rich Low_complexity Low_complexity 1 35 0 799 294 79 20 chr3 181227054 181227346 -36809812 - MLT2E LTR ERVL 0 628 320 525 298 95 6 chr3 181227448 181227606 -36809552 - MLT2E LTR ERVL -447 181 10 660 306 69 25 chr3 181227975 181228292 -36808866 - MLT1K LTR MaLR -30 558 228 252 245 0 0 chr3 181228333 181228382 -36808776 + MLT2B2 LTR ERVL 1 49 -466 1421 134 36 0 chr3 181228382 181228701 -36808457 - L1PA15 LINE L1 -728 5437 5110 3719 165 16 20 chr3 181228701 181229424 -36807734 + L1PA15 LINE L1 5420 6148 -17 939 283 52 10 chr3 181229431 181229795 -36807363 + MLT2B2 LTR ERVL 50 476 -39 222 37 0 0 chr3 181229795 181229822 -36807336 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 293 161 0 4 chr3 181229825 181229883 -36807275 + MLT2D LTR ERVL 357 407 -7 2045 224 24 19 chr3 181230019 181230484 -36806674 + MLT1C LTR MaLR 1 467 0 1124 261 43 21 chr3 181230882 181231254 -36805904 - MLT1D LTR MaLR 0 505 126 200 336 84 28 chr3 181233365 181233472 -36803686 - L2 LINE L2 -18 3295 3183 356 270 79 34 chr3 181233674 181233852 -36803306 - LTR41 LTR ERVL -5 768 583 1623 121 83 13 chr3 181234709 181235022 -36802136 - L1MA5 LINE L1 -2 6298 5964 825 169 20 0 chr3 181235022 181235170 -36801988 + L1MA5 LINE L1 5811 5961 -339 317 294 0 22 chr3 181236129 181236221 -36800937 - L1MC4 LINE L1 -1339 6703 6614 304 316 0 21 chr3 181236137 181236232 -36800926 + L1MC4 LINE L1 6614 6706 -1336 * 189 378 8 25 chr3 181236711 181236830 -36800328 + MIR SINE MIR 17 133 -129 216 0 0 0 chr3 181236925 181236949 -36800209 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2125 119 0 0 chr3 181236952 181237246 -36799912 - AluSx SINE Alu -18 294 1 364 350 123 5 chr3 181237477 181237680 -36799478 + LTR16C LTR ERVL 265 491 0 1134 210 10 5 chr3 181238608 181238808 -36798350 - MER20 DNA MER1_type -18 201 1 267 103 0 0 chr3 181238808 181238847 -36798311 + (TATG)n Simple_repeat Simple_repeat 1 39 0 23 0 0 0 chr3 181240573 181240596 -36796562 + AT_rich Low_complexity Low_complexity 1 23 0 1915 243 38 11 chr3 181240874 181241319 -36795839 + MLT2B1 LTR ERVL 1 457 -63 342 0 0 0 chr3 181241334 181241372 -36795786 + (CA)n Simple_repeat Simple_repeat 2 39 0 24 96 0 0 chr3 181241485 181241558 -36795600 + AT_rich Low_complexity Low_complexity 1 73 0 3204 201 57 30 chr3 181242005 181242809 -36794349 - LTR1B LTR ERV1 0 826 1 186 189 0 0 chr3 181243898 181243935 -36793223 + (CATA)n Simple_repeat Simple_repeat 2 38 0 226 263 51 36 chr3 181246318 181246455 -36790703 + MER103 DNA DNA 27 165 -1 356 310 39 125 chr3 181246573 181246934 -36790224 - L2 LINE L2 0 3272 2943 607 272 120 46 chr3 181247879 181248247 -36788911 - L1MC/D LINE L1 -2031 5777 5383 295 405 59 0 chr3 181248270 181248423 -36788735 + MER91A DNA MER1_type 34 195 -1 339 318 188 19 chr3 181248595 181249107 -36788051 - L1MC/D LINE L1 -979 5167 4570 1925 146 3 20 chr3 181249908 181250209 -36786949 + AluSx SINE Alu 1 296 -16 296 289 128 69 chr3 181250270 181250488 -36786670 + L2 LINE L2 151 381 -2933 665 282 189 75 chr3 181250519 181251079 -36786079 + L2 LINE L2 1722 2345 -969 22 0 0 0 chr3 181252085 181252107 -36785051 + AT_rich Low_complexity Low_complexity 1 22 0 31 0 0 0 chr3 181252410 181252441 -36784717 + AT_rich Low_complexity Low_complexity 1 31 0 183 42 0 0 chr3 181253263 181253287 -36783871 + (A)n Simple_repeat Simple_repeat 1 24 0 21 36 0 0 chr3 181254488 181254516 -36782642 + AT_rich Low_complexity Low_complexity 1 28 0 2038 125 3 0 chr3 181256388 181256683 -36780475 + AluSg SINE Alu 4 299 -11 204 40 0 0 chr3 181257052 181257077 -36780081 + (CA)n Simple_repeat Simple_repeat 2 26 0 1633 157 63 0 chr3 181257130 181257433 -36779725 + AluSx SINE Alu 1 320 0 34 72 0 0 chr3 181257623 181257692 -36779466 + AT_rich Low_complexity Low_complexity 1 69 0 22 0 0 0 chr3 181258047 181258069 -36779089 + AT_rich Low_complexity Low_complexity 1 22 0 889 199 6 0 chr3 181258530 181258686 -36778472 - MLT1B LTR MaLR -17 373 217 480 198 0 0 chr3 181260169 181260255 -36776903 + FLAM_A SINE Alu 1 86 -56 428 237 31 0 chr3 181260296 181260423 -36776735 + FRAM SINE Alu 77 206 0 2401 70 0 0 chr3 181260532 181260832 -36776326 - AluY SINE Alu -10 301 2 213 39 0 0 chr3 181260835 181260861 -36776297 + (T)n Simple_repeat Simple_repeat 1 26 0 408 317 68 6 chr3 181261081 181261242 -36775916 + MIR SINE MIR 36 206 -56 561 144 0 0 chr3 181261505 181261602 -36775556 + L1PA8 LINE L1 6076 6172 0 1305 148 36 4 chr3 181261602 181261833 -36775325 + L1MA1 LINE L1 6045 6302 0 23 33 0 0 chr3 181261833 181261863 -36775295 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr3 181262610 181262648 -36774510 + AT_rich Low_complexity Low_complexity 1 38 0 27 49 0 0 chr3 181262974 181263015 -36774143 + AT_rich Low_complexity Low_complexity 1 41 0 253 259 0 0 chr3 181264182 181264240 -36772918 + MLT1J LTR MaLR 123 180 -331 398 294 71 29 chr3 181264682 181264852 -36772306 + MIR SINE MIR 52 228 -34 235 377 0 0 chr3 181264994 181265063 -36772095 - L2 LINE L2 -18 3254 3186 335 77 0 19 chr3 181265194 181265246 -36771912 + (CA)n Simple_repeat Simple_repeat 2 52 0 412 256 98 14 chr3 181265992 181266277 -36770881 - Charlie2 DNA MER1_type -4 2858 2550 24 0 0 0 chr3 181266506 181266530 -36770628 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr3 181268007 181268029 -36769129 + AT_rich Low_complexity Low_complexity 1 22 0 974 192 35 0 chr3 181268276 181268479 -36768679 + MER20 DNA MER1_type 10 219 0 306 333 77 39 chr3 181268829 181268985 -36768173 + MLT1L LTR MaLR 306 467 -148 234 182 15 15 chr3 181269100 181269166 -36767992 - LTR30 LTR ERV1 -113 609 544 1677 77 0 183 chr3 181269166 181269505 -36767653 - LTR12 LTR ERV1 -437 277 1 183 42 0 0 chr3 181269618 181269642 -36767516 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2056 100 4 0 chr3 181269644 181269923 -36767235 - AluSg SINE Alu -30 280 1 296 314 27 66 chr3 181270254 181270384 -36766774 + L1ME3 LINE L1 1268 1402 -4994 2325 41 3 3 chr3 181270384 181270679 -36766479 + L1PA4 LINE L1 5857 6151 -4 296 314 27 66 chr3 181270679 181270959 -36766199 + L1ME3 LINE L1 1402 1662 -4734 384 333 54 50 chr3 181270968 181271247 -36765911 + L1ME3 LINE L1 2487 2766 -3449 591 291 98 44 chr3 181271254 181271530 -36765628 + L1ME3 LINE L1 5332 5644 -595 210 91 0 0 chr3 181271530 181271563 -36765595 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 591 291 98 44 chr3 181271563 181271743 -36765415 + L1ME3 LINE L1 5644 5813 -426 868 224 53 113 chr3 181271936 181272369 -36764789 + L1ME3 LINE L1 5819 6225 -6 1232 294 81 48 chr3 181272687 181273266 -36763892 - MER90 LTR ERV1 0 614 17 7247 215 24 8 chr3 181274190 181276591 -36760567 - L1PA16 LINE L1 0 6166 3718 389 95 11 168 chr3 181276591 181276646 -36760512 - MADE1 DNA Mariner 0 80 45 1824 156 0 19 chr3 181276646 181276954 -36760204 + AluSx SINE Alu 1 302 -10 389 95 11 168 chr3 181276954 181276993 -36760165 - MADE1 DNA Mariner -35 45 1 7247 215 24 8 chr3 181276993 181277239 -36759919 - L1PA16 LINE L1 -2448 3718 3477 21 36 0 0 chr3 181277674 181277702 -36759456 + AT_rich Low_complexity Low_complexity 1 28 0 7747 130 34 22 chr3 181277746 181278996 -36758162 - THE1-int LTR MaLR -281 1299 35 227 272 54 68 chr3 181279256 181279403 -36757755 - Charlie8 DNA MER1_type -2159 258 114 339 25 0 0 chr3 181279450 181279490 -36757668 + (TCTA)n Simple_repeat Simple_repeat 3 42 0 1926 166 10 39 chr3 181279512 181279898 -36757260 - THE1C LTR MaLR 0 375 1 1755 244 31 25 chr3 181279911 181280424 -36756734 - MLT2B1 LTR ERVL 0 520 5 270 357 49 14 chr3 181280424 181280567 -36756591 + L2 LINE L2 3162 3309 -4 25 65 0 0 chr3 181280734 181280780 -36756378 + AT_rich Low_complexity Low_complexity 1 46 0 206 361 28 0 chr3 181280901 181280973 -36756185 - L2 LINE L2 -8 3264 3191 256 104 21 62 chr3 181281620 181281668 -36755490 + L2 LINE L2 3267 3312 -1 22 35 0 0 chr3 181281700 181281729 -36755429 + AT_rich Low_complexity Low_complexity 1 29 0 387 271 19 112 chr3 181281879 181282137 -36755021 - MER102a DNA MER1_type -12 318 85 2742 219 103 35 chr3 181282798 181283545 -36753613 - LTR28 LTR ERV1 -222 798 1 522 232 28 83 chr3 181283545 181283724 -36753434 + MER20 DNA MER1_type 50 218 -1 273 331 23 46 chr3 181284771 181284901 -36752257 + MIR SINE MIR 57 183 -79 26 0 0 0 chr3 181285283 181285309 -36751849 + AT_rich Low_complexity Low_complexity 1 26 0 225 94 0 0 chr3 181285937 181285969 -36751189 + (TAA)n Simple_repeat Simple_repeat 2 33 0 214 301 55 0 chr3 181286090 181286163 -36750995 - MIR SINE MIR -122 140 64 22 0 0 0 chr3 181286412 181286434 -36750724 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 181286932 181286953 -36750205 + AT_rich Low_complexity Low_complexity 1 21 0 335 313 10 0 chr3 181286999 181287098 -36750060 + L2 LINE L2 2235 2334 -980 1373 191 14 51 chr3 181287131 181287243 -36749915 - L1MB3 LINE L1 -7 6176 6061 2354 68 7 0 chr3 181287243 181287535 -36749623 + AluY SINE Alu 1 294 -17 1373 191 14 51 chr3 181287535 181287819 -36749339 - L1MB3 LINE L1 -122 6061 5783 249 222 0 0 chr3 181287808 181287871 -36749287 + (TG)n Simple_repeat Simple_repeat 2 64 0 * 266 303 0 0 chr3 181287820 181287886 -36749272 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 1209 220 11 26 chr3 181287906 181288179 -36748979 - L1MB3 LINE L1 -405 5778 5510 21 0 0 0 chr3 181288347 181288368 -36748790 + AT_rich Low_complexity Low_complexity 1 21 0 2384 82 0 0 chr3 181288611 181288914 -36748244 + AluY SINE Alu 1 303 -8 187 330 12 104 chr3 181289045 181289218 -36747940 - MIR3 SINE MIR 0 208 52 1142 214 138 0 chr3 181289461 181289736 -36747422 + MER7A DNA MER2_type 35 345 -1 181 297 23 47 chr3 181289989 181290117 -36747041 + MER5C DNA MER1_type 125 249 -75 26 50 0 0 chr3 181290356 181290396 -36746762 + AT_rich Low_complexity Low_complexity 1 40 0 21 57 0 0 chr3 181290854 181290889 -36746269 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr3 181291001 181291030 -36746128 + AT_rich Low_complexity Low_complexity 1 29 0 16588 213 44 14 chr3 181291711 181293994 -36743164 + L1M1 LINE L1 27 2238 -5327 2232 98 0 3 chr3 181293994 181294289 -36742869 + AluY SINE Alu 3 296 -15 16588 213 44 14 chr3 181294289 181295271 -36741887 + L1M1 LINE L1 2238 3188 -4377 806 78 0 9 chr3 181295271 181295387 -36741771 + (GGAA)n Simple_repeat Simple_repeat 3 117 0 16588 213 44 14 chr3 181295387 181297759 -36739399 + L1M1 LINE L1 3188 5839 -1726 1449 249 52 68 chr3 181297767 181298281 -36738877 - MLT2B3 LTR ERVL 0 554 49 5013 118 57 12 chr3 181298281 181299053 -36738105 - HERVL-A2 LTR ERVL -1940 3714 2908 2215 139 3 47 chr3 181299054 181299435 -36737723 + THE1B LTR MaLR 1 364 0 6043 125 13 8 chr3 181299435 181300354 -36736804 + THE1B-int LTR MaLR 1 924 -656 1225 150 8 81 chr3 181300374 181300621 -36736537 + THE1B LTR MaLR 136 364 0 7416 130 6 1 chr3 181300621 181301711 -36735447 - HERVL-A2 LTR ERVL -2744 2910 1815 * 8491 130 74 73 chr3 181301681 181302353 -36734805 - HERVL-A2 LTR ERVL -3989 1665 995 194 210 80 110 chr3 181302353 181302453 -36734705 - MER5C DNA MER1_type -226 98 2 8491 130 74 73 chr3 181302453 181303345 -36733813 - HERVL-A2 LTR ERVL -4659 995 1 1771 199 45 50 chr3 181303345 181303897 -36733261 - MLT2A2 LTR ERVL 0 554 3 4361 188 18 2 chr3 181303899 181305022 -36732136 + L1M1 LINE L1 5857 6998 -725 1361 26 0 0 chr3 181305027 181305181 -36731977 - AluYb8 SINE Alu -164 154 1 8808 35 1 9 chr3 181305181 181307025 -36730133 + L1PA3 LINE L1 4319 6155 0 276 247 0 37 chr3 181307790 181307871 -36729287 - L1MEc LINE L1 -6281 115 38 295 274 105 40 chr3 181307975 181308099 -36729059 - HAL1 LINE L1 -556 1951 1820 216 135 0 0 chr3 181308321 181308358 -36728800 + (T)n Simple_repeat Simple_repeat 1 37 0 681 175 15 7 chr3 181308403 181308563 -36728595 - L1 LINE L1 -1078 5068 4906 1527 27 11 0 chr3 181308571 181308758 -36728400 - L1PA4 LINE L1 0 6155 5967 431 95 0 0 chr3 181308892 181308955 -36728203 - MER53 DNA DNA -124 65 3 2044 311 65 27 chr3 181309843 181310686 -36726472 + L1M4b LINE L1 2 876 -5983 234 180 0 0 chr3 181312011 181312072 -36725086 + (CA)n Simple_repeat Simple_repeat 2 62 0 1620 156 186 16 chr3 181312179 181312545 -36724613 + MSTA LTR MaLR 1 428 0 263 341 7 7 chr3 181312948 181313083 -36724075 + MLT1I LTR MaLR 272 406 -3 478 306 27 0 chr3 181313164 181313311 -36723847 + MLT1J1 LTR MaLR 8 158 -288 1496 32 0 0 chr3 181313809 181313999 -36723159 - L1P LINE L1 -5052 1094 905 7461 37 0 0 chr3 181313999 181315215 -36721943 + L1PA3 LINE L1 4937 6152 -3 300 27 0 0 chr3 181315302 181315339 -36721819 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 1948 134 0 0 chr3 181315343 181315619 -36721539 - AluSc SINE Alu -33 276 1 4065 186 13 19 chr3 181316540 181316895 -36720263 - L1MA6 LINE L1 -4 6296 5940 225 0 0 0 chr3 181316895 181316920 -36720238 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 4065 186 13 19 chr3 181316920 181317435 -36719723 - L1MA6 LINE L1 -360 5940 5432 7476 208 41 8 chr3 181318192 181319719 -36717439 + L1M1 LINE L1 21 1598 -5967 1679 226 11 6 chr3 181319723 181320085 -36717073 - L1P3 LINE L1 -5504 371 8 958 201 35 4 chr3 181320086 181320407 -36716751 - L1 LINE L1 -3782 3783 3451 * 1044 278 58 42 chr3 181320383 181320761 -36716397 - L1 LINE L1 -7170 395 12 249 274 26 18 chr3 181320906 181321019 -36716139 - L1MCc LINE L1 -5139 1284 1171 26 50 0 0 chr3 181321129 181321169 -36715989 + AT_rich Low_complexity Low_complexity 1 40 0 255 281 0 31 chr3 181321845 181321941 -36715217 - L1MCc LINE L1 -5888 534 442 592 159 25 18 chr3 181321954 181322117 -36715041 + CT-rich Low_complexity Low_complexity 3 166 0 308 300 114 9 chr3 181322187 181322407 -36714751 + L1ME3A LINE L1 5912 6154 -16 211 167 30 0 chr3 181322538 181322604 -36714554 + (TA)n Simple_repeat Simple_repeat 2 69 0 24 0 0 0 chr3 181322980 181323004 -36714154 + AT_rich Low_complexity Low_complexity 1 24 0 191 225 14 0 chr3 181323626 181323697 -36713461 + (TA)n Simple_repeat Simple_repeat 2 73 0 246 196 71 0 chr3 181325187 181325243 -36711915 - L1 LINE L1 -1793 4353 4294 25 65 0 0 chr3 181325431 181325477 -36711681 + AT_rich Low_complexity Low_complexity 1 46 0 2076 218 19 52 chr3 181325640 181326158 -36711000 - MER67D LTR ERV1 0 514 14 14688 104 4 1 chr3 181327344 181329496 -36707662 - L1PA7 LINE L1 -951 5195 3039 6432 87 6 3 chr3 181329496 181330423 -36706735 + L1PA7 LINE L1 5219 6147 -7 1075 279 82 31 chr3 181330853 181331439 -36705719 + MLT1E2 LTR MaLR 1 601 -25 407 192 0 0 chr3 181331576 181331654 -36705504 + MER116 DNA Mariner 3 80 0 1895 102 0 138 chr3 181332428 181332782 -36704376 + AluSg SINE Alu 3 307 -3 2711 30 21 0 chr3 181332891 181333220 -36703938 - L1P2 LINE L1 -440 5714 5379 817 31 0 0 chr3 181333220 181333308 -36703850 + L1PA5 LINE L1 6051 6147 -7 24 0 0 0 chr3 181333308 181333332 -36703826 + AT_rich Low_complexity Low_complexity 1 24 0 2488 62 0 3 chr3 181333972 181334280 -36702878 - AluY SINE Alu -1 310 4 188 188 0 0 chr3 181335034 181335066 -36702092 - MER5A DNA MER1_type -3 186 155 191 347 42 28 chr3 181335220 181335292 -36701866 + MER5A DNA MER1_type 108 180 -9 270 333 36 0 chr3 181336801 181336912 -36700246 - MIR SINE MIR -5 257 143 25 0 0 0 chr3 181336936 181336961 -36700197 + AT_rich Low_complexity Low_complexity 1 25 0 2215 86 3 29 chr3 181337255 181337569 -36699589 - AluSg SINE Alu -4 306 1 201 39 0 0 chr3 181337676 181337702 -36699456 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 289 325 26 26 chr3 181339056 181339173 -36697985 + MIR3 SINE MIR 77 193 -15 198 71 0 0 chr3 181339425 181339453 -36697705 + (CAAAC)n Simple_repeat Simple_repeat 3 30 0 1163 160 117 71 chr3 181339615 181339897 -36697261 + AluJo SINE Alu 5 299 -3 988 189 4 21 chr3 181339957 181340200 -36696958 - AluSg/x SINE Alu -2 310 72 2163 116 0 10 chr3 181340300 181340610 -36696548 - AluSx SINE Alu -3 309 3 233 266 47 0 chr3 181340653 181340717 -36696441 + CT-rich Low_complexity Low_complexity 1 67 0 2768 158 10 3 chr3 181341467 181342115 -36695043 - L1P5 LINE L1 -473 5678 5023 7368 214 23 25 chr3 181342151 181342501 -36694657 - L1PBb LINE L1 -2107 4096 3747 381 22 0 0 chr3 181342501 181342547 -36694611 + (TTG)n Simple_repeat Simple_repeat 3 48 0 7368 214 23 25 chr3 181342547 181344126 -36693032 - L1PBb LINE L1 -2456 3747 2180 2104 117 0 3 chr3 181344126 181344417 -36692741 - AluSg SINE Alu -20 290 1 7368 214 23 25 chr3 181344417 181345989 -36691169 - L1PBb LINE L1 -4023 2180 606 12620 110 10 2 chr3 181345989 181347962 -36689196 - L1P3 LINE L1 -692 5462 3476 3791 107 18 0 chr3 181347963 181348563 -36688595 + L1P3 LINE L1 2855 3465 -2681 1912 265 131 42 chr3 181348558 181349202 -36687956 - L1M4 LINE L1 -1230 4916 4330 * 2198 114 0 0 chr3 181349202 181349500 -36687658 - AluSx SINE Alu -14 298 1 1912 265 131 42 chr3 181349500 181350426 -36686732 - L1M4 LINE L1 -1816 4330 3207 254 268 0 0 chr3 181350448 181350530 -36686628 + L1MC4 LINE L1 6621 6702 -1340 2268 94 0 3 chr3 181350530 181350829 -36686329 - AluSp SINE Alu -15 298 1 26 30 0 0 chr3 181351545 181351578 -36685580 + AT_rich Low_complexity Low_complexity 1 33 0 539 321 88 15 chr3 181352116 181352593 -36684565 - L1MC/D LINE L1 -2001 5807 5296 191 381 32 24 chr3 181353105 181353231 -36683927 + L2 LINE L2 3184 3310 -3 1633 183 19 11 chr3 181353461 181353828 -36683330 - L1MA4 LINE L1 -1 6299 5930 1001 41 8 0 chr3 181353828 181353949 -36683209 - L1P LINE L1 -6018 128 7 25 0 0 0 chr3 181354088 181354113 -36683045 + AT_rich Low_complexity Low_complexity 1 25 0 236 331 0 8 chr3 181354733 181354857 -36682301 + (TA)n Simple_repeat Simple_repeat 1 123 0 21 0 0 0 chr3 181355230 181355251 -36681907 + AT_rich Low_complexity Low_complexity 1 21 0 11918 156 47 44 chr3 181355437 181357813 -36679345 - Tigger1 DNA MER2_type -3 2415 33 21 71 0 0 chr3 181358140 181358182 -36678976 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr3 181358600 181358629 -36678529 + AT_rich Low_complexity Low_complexity 1 29 0 290 317 0 0 chr3 181358679 181358760 -36678398 - MIR SINE MIR -93 115 43 23 0 0 0 chr3 181359016 181359039 -36678119 + AT_rich Low_complexity Low_complexity 1 23 0 1261 335 85 32 chr3 181359626 181360792 -36676366 - MERVL LTR ERVL -2397 3088 1861 23 0 0 0 chr3 181361121 181361144 -36676014 + AT_rich Low_complexity Low_complexity 1 23 0 1122 153 228 0 chr3 181361144 181361385 -36675773 - AluJb SINE Alu -6 296 1 2452 55 0 10 chr3 181361797 181362106 -36675052 + AluY SINE Alu 1 306 -5 263 303 101 10 chr3 181362684 181362783 -36674375 - MIR SINE MIR -64 144 37 810 182 0 0 chr3 181362906 181363038 -36674120 - FLAM_C SINE Alu 0 133 2 363 308 77 14 chr3 181363722 181363865 -36673293 - MIR SINE MIR -64 198 47 584 108 0 0 chr3 181364766 181364849 -36672309 + L1MA3 LINE L1 5874 5956 -349 28 61 0 0 chr3 181364897 181364946 -36672212 + AT_rich Low_complexity Low_complexity 1 49 0 236 176 0 59 chr3 181365026 181365077 -36672081 - L2 LINE L2 -4 3309 3262 246 333 23 17 chr3 181366757 181366931 -36670227 + L1ME LINE L1 1344 1518 -5341 2443 267 68 25 chr3 181366951 181367585 -36669573 + L1ME LINE L1 4961 5566 -1411 3830 113 4 89 chr3 181367585 181368311 -36668847 - MER4A LTR ERV1 0 664 1 2443 267 68 25 chr3 181368311 181369169 -36667989 + L1ME LINE L1 5566 6512 -465 210 128 0 0 chr3 181369179 181369218 -36667940 + (TC)n Simple_repeat Simple_repeat 2 40 0 13156 203 14 16 chr3 181369287 181372900 -36664258 - L1PA11 LINE L1 0 6174 2565 867 299 29 61 chr3 181373585 181374210 -36662948 - L2 LINE L2 -2 3311 2722 329 331 7 36 chr3 181374405 181374544 -36662614 - MER117 DNA MER1_type -55 142 8 2699 146 108 51 chr3 181374647 181375448 -36661710 + pTR5 LTR ERV1 741 2025 -413 315 224 31 20 chr3 181375448 181375546 -36661612 + LTR30 LTR ERV1 544 642 -80 1613 71 5 9 chr3 181375549 181375773 -36661385 + pTR5 LTR ERV1 172 394 -2044 7502 188 52 17 chr3 181376328 181378610 -36658548 + L1MA3 LINE L1 10 3040 -4525 1393 223 0 0 chr3 181378614 181378874 -36658284 + AluSx SINE Alu 1 260 -52 1107 86 11 11 chr3 181378909 181379084 -36658074 + (GAAA)n Simple_repeat Simple_repeat 4 178 0 12438 192 30 12 chr3 181379113 181379450 -36657708 + L1MA3 LINE L1 3059 3389 -4335 182 37 37 0 chr3 181379450 181379477 -36657681 + (CA)n Simple_repeat Simple_repeat 1 28 0 12438 192 30 12 chr3 181379477 181381131 -36656027 + L1MA3 LINE L1 3389 5013 -2711 189 0 0 0 chr3 181381131 181381152 -36656006 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 12438 192 30 12 chr3 181381152 181383737 -36653421 + L1MA3 LINE L1 5013 7724 0 2694 219 43 9 chr3 181383799 181384453 -36652705 - L1MC3 LINE L1 -1 7784 7109 391 209 81 0 chr3 181384458 181384544 -36652614 + MLT1B LTR MaLR 281 373 -17 237 281 0 12 chr3 181384559 181384641 -36652517 + (TATATG)n Simple_repeat Simple_repeat 2 82 0 494 232 66 61 chr3 181384653 181384834 -36652324 + L1MC3 LINE L1 6048 6229 -1556 * 1010 293 93 92 chr3 181384826 181385540 -36651618 - L1MC3 LINE L1 -299 6045 5854 2329 45 14 0 chr3 181385981 181386270 -36650888 + AluY SINE Alu 1 293 -18 203 261 23 8 chr3 181387300 181387430 -36649728 + (TA)n Simple_repeat Simple_repeat 1 132 0 314 339 143 17 chr3 181388805 181389106 -36648052 + L1ME LINE L1 4735 5073 -1073 594 290 55 20 chr3 181389149 181389689 -36647469 + L1ME LINE L1 5149 5746 -375 251 309 63 48 chr3 181390425 181390820 -36646338 - HAL1 LINE L1 -1232 1275 875 250 291 39 97 chr3 181391339 181391545 -36645613 - HAL1 LINE L1 -2295 212 19 24 85 0 0 chr3 181391636 181391695 -36645463 + AT_rich Low_complexity Low_complexity 1 59 0 2988 157 123 8 chr3 181391716 181392359 -36644799 - L1MA8 LINE L1 -4 6287 5571 223 245 21 0 chr3 181392578 181392672 -36644486 + (TATG)n Simple_repeat Simple_repeat 1 96 0 1011 315 81 30 chr3 181392672 181393513 -36643645 - HAL1 LINE L1 -211 2296 1413 1599 152 31 14 chr3 181393625 181393914 -36643244 - AluJb SINE Alu -18 294 1 341 366 38 14 chr3 181393933 181394146 -36643012 - HAL1 LINE L1 -2082 425 208 29 28 0 0 chr3 181394309 181394345 -36642813 + AT_rich Low_complexity Low_complexity 1 36 0 313 324 71 28 chr3 181394408 181394590 -36642568 - HAL1b LINE L1 -999 349 160 2209 220 48 151 chr3 181394835 181396054 -36641104 + MER52A LTR ERV1 663 1755 0 22 0 0 0 chr3 181396112 181396134 -36641024 + AT_rich Low_complexity Low_complexity 1 22 0 1477 173 102 43 chr3 181396447 181396840 -36640318 - MLT2C2 LTR ERVL -48 416 1 5819 152 78 17 chr3 181396897 181397151 -36640007 - Tigger3b DNA MER2_type -1797 1231 994 612 230 16 0 chr3 181397151 181397277 -36639881 + FLAM_A SINE Alu 3 130 -3 5819 152 78 17 chr3 181397277 181398169 -36638989 - Tigger3b DNA MER2_type -2034 994 14 23 33 0 0 chr3 181398674 181398704 -36638454 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr3 181399293 181399316 -36637842 + AT_rich Low_complexity Low_complexity 1 23 0 273 136 11 125 chr3 181399326 181399414 -36637744 - HsTC2 DNA Tc2 -2 1896 1819 565 304 26 10 chr3 181399582 181399776 -36637382 + L1MEd LINE L1 426 622 -5497 332 218 35 11 chr3 181399803 181399890 -36637268 - HsTC2 DNA Tc2 -1808 90 2 207 219 0 0 chr3 181399992 181400033 -36637125 + (TAA)n Simple_repeat Simple_repeat 2 42 0 277 292 100 0 chr3 181400045 181400165 -36636993 - MIR SINE MIR -11 251 120 612 167 17 0 chr3 181401051 181401171 -36635987 - L1MB4 LINE L1 -7 6173 6052 451 217 0 0 chr3 181401238 181401321 -36635837 - MER41B LTR ERV1 0 635 553 27 0 0 0 chr3 181401875 181401902 -36635256 + AT_rich Low_complexity Low_complexity 1 27 0 49 18 0 0 chr3 181402423 181402479 -36634679 + AT_rich Low_complexity Low_complexity 1 56 0 331 331 20 13 chr3 181402537 181402688 -36634470 + MLT1H LTR MaLR 1 152 -397 355 243 121 33 chr3 181402857 181403011 -36634147 + MLT1H LTR MaLR 392 533 -16 1676 192 47 11 chr3 181403090 181403450 -36633708 - THE1C LTR MaLR 0 375 3 251 21 83 0 chr3 181403570 181403618 -36633540 + (TA)n Simple_repeat Simple_repeat 1 52 0 2406 60 0 3 chr3 181405599 181405900 -36631258 + AluY SINE Alu 1 300 -11 195 42 0 0 chr3 181405900 181405924 -36631234 + (TA)n Simple_repeat Simple_repeat 2 25 0 317 340 66 46 chr3 181405940 181406181 -36630977 + MLT1I LTR MaLR 34 279 -130 1172 313 179 16 chr3 181406692 181407394 -36629764 + L2 LINE L2 140 956 -2358 916 125 0 0 chr3 181407471 181407634 -36629524 - AluSg/x SINE Alu 0 312 172 1634 296 139 88 chr3 181407703 181409898 -36627260 + L2 LINE L2 944 3260 -53 2441 30 40 0 chr3 181409898 181410197 -36626961 + AluY SINE Alu 1 311 0 1634 296 139 88 chr3 181410197 181410254 -36626904 + L2 LINE L2 3260 3313 0 226 239 30 45 chr3 181410920 181410987 -36626171 + L1MC4 LINE L1 6770 6835 -1207 * 264 109 43 0 chr3 181410983 181411029 -36626129 - L1M3 LINE L1 -566 5617 5570 590 167 8 17 chr3 181411030 181411150 -36626008 + L1MA8 LINE L1 6169 6287 -4 308 234 0 0 chr3 181411180 181411244 -36625914 + L1MD3 LINE L1 6798 6861 -1134 323 233 83 75 chr3 181411822 181411955 -36625203 - MLT1I LTR MaLR -3 406 273 196 376 35 65 chr3 181413782 181413952 -36623206 + L2 LINE L2 3035 3199 -73 26 50 0 0 chr3 181414412 181414452 -36622706 + AT_rich Low_complexity Low_complexity 1 40 0 207 0 0 0 chr3 181414794 181414817 -36622341 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 25 31 0 0 chr3 181415263 181415295 -36621863 + AT_rich Low_complexity Low_complexity 1 32 0 415 324 47 14 chr3 181416398 181416611 -36620547 - MIR SINE MIR -4 258 39 311 260 0 48 chr3 181416688 181416792 -36620366 + L1MC4 LINE L1 6604 6702 -1340 3889 222 19 4 chr3 181416829 181417599 -36619559 + ERVL LTR ERVL 2592 3373 -2391 8571 189 59 24 chr3 181417603 181418915 -36618243 + ERVL LTR ERVL 3829 5221 -543 1432 225 65 29 chr3 181418915 181419297 -36617861 - MSTD LTR MaLR 0 396 1 8571 189 59 24 chr3 181419297 181419768 -36617390 + ERVL LTR ERVL 5221 5674 -90 21 0 0 0 chr3 181420646 181420667 -36616491 + AT_rich Low_complexity Low_complexity 1 21 0 217 329 44 58 chr3 181422513 181422650 -36614508 + MIR SINE MIR 20 154 -108 231 88 0 0 chr3 181422663 181422697 -36614461 + (TG)n Simple_repeat Simple_repeat 2 35 0 25 31 0 0 chr3 181423340 181423372 -36613786 + AT_rich Low_complexity Low_complexity 1 32 0 281 322 87 38 chr3 181423875 181424058 -36613100 + L2 LINE L2 3122 3313 0 494 158 0 3 chr3 181424210 181424445 -36612713 + AluSx SINE Alu 1 303 -6 308 228 7 125 chr3 181425621 181425757 -36611401 - L1MC4 LINE L1 -1340 6702 6583 27 62 0 0 chr3 181425803 181425851 -36611307 + AT_rich Low_complexity Low_complexity 1 48 0 32 0 0 0 chr3 181425902 181425934 -36611224 + AT_rich Low_complexity Low_complexity 1 32 0 132 58 0 0 chr3 181426691 181426914 -36610244 + AT_rich Low_complexity Low_complexity 1 223 0 231 367 51 23 chr3 181427694 181427871 -36609287 + L2 LINE L2 2507 2688 -626 261 57 0 0 chr3 181427886 181427921 -36609237 + (TG)n Simple_repeat Simple_repeat 2 36 0 681 194 40 17 chr3 181428045 181428220 -36608938 + L1MA2 LINE L1 13 191 -7374 256 0 50 25 chr3 181428222 181428262 -36608896 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 11247 205 33 63 chr3 181428283 181431791 -36605367 + L1MA2 LINE L1 1048 4472 -3093 515 209 1 0 chr3 181431817 181431926 -36605232 + L1MA2 LINE L1 4693 4802 -2763 * 5795 201 17 28 chr3 181431922 181432602 -36604556 + L1MA2 LINE L1 5290 5976 -1747 2112 112 17 85 chr3 181432602 181433004 -36604154 + THE1C LTR MaLR 1 375 0 5795 201 17 28 chr3 181433004 181433439 -36603719 + L1MA2 LINE L1 5976 6414 -1309 2114 123 3 10 chr3 181433439 181433741 -36603417 + AluSp SINE Alu 1 300 -13 5795 201 17 28 chr3 181433741 181435134 -36602024 + L1MA2 LINE L1 6414 7717 -6 734 270 63 25 chr3 181435152 181435431 -36601727 + L1ME1 LINE L1 5812 6101 -65 33 43 0 0 chr3 181435445 181435492 -36601666 + AT_rich Low_complexity Low_complexity 1 47 0 17270 94 6 3 chr3 181536939 181539950 -36497208 - L1PA7 LINE L1 -296 5858 2838 28 48 0 0 chr3 181540287 181540329 -36496829 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr3 181540530 181540553 -36496605 + AT_rich Low_complexity Low_complexity 1 23 0 22 80 0 0 chr3 181540640 181540690 -36496468 + AT_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr3 181541909 181541932 -36495226 + AT_rich Low_complexity Low_complexity 1 23 0 2233 88 0 10 chr3 181542384 181542680 -36494478 - AluSc SINE Alu -16 293 1 279 0 0 0 chr3 181542715 181542746 -36494412 + (CA)n Simple_repeat Simple_repeat 2 32 0 472 273 60 13 chr3 181644325 181644475 -36392683 - LTR52 LTR ERVL -264 157 1 1376 237 40 34 chr3 181644483 181644863 -36392295 - LTR52-int LTR ERVL -8 3548 3167 352 121 76 0 chr3 181644882 181644948 -36392210 - LTR52 LTR ERVL -350 71 1 412 208 69 35 chr3 181645630 181645774 -36391384 - L1MB8 LINE L1 0 6178 6030 1078 179 5 0 chr3 181645779 181645974 -36391184 + L1MC1 LINE L1 6131 6326 -7 478 287 115 32 chr3 181646774 181647654 -36389504 + L1ME LINE L1 1343 2177 -4782 31 58 0 0 chr3 181647950 181648002 -36389156 + AT_rich Low_complexity Low_complexity 1 52 0 941 228 88 28 chr3 181650099 181650349 -36386809 - AluJb SINE Alu -47 265 1 21 0 0 0 chr3 181650441 181650462 -36386696 + AT_rich Low_complexity Low_complexity 1 21 0 4877 199 32 8 chr3 181650746 181652104 -36385054 - L1MA4 LINE L1 -3 6479 5102 677 210 0 7 chr3 181652094 181652232 -36384926 - MSTB1-int LTR MaLR -1514 137 1 * 2046 205 14 9 chr3 181652232 181652662 -36384496 - MSTB1 LTR MaLR 0 432 1 1569 241 52 7 chr3 181652662 181653122 -36384036 - L1MA4 LINE L1 -3433 2895 2415 404 204 11 0 chr3 181653144 181653237 -36383921 - AluSg SINE Alu -6 303 210 1445 149 5 5 chr3 181653362 181653583 -36383575 - AluSg SINE Alu -89 221 1 5506 224 37 24 chr3 181653583 181655984 -36381174 - L1MA4 LINE L1 -3899 2429 14 1787 194 25 33 chr3 181656521 181656887 -36380271 + MLT1A1 LTR MaLR 3 365 0 1551 272 44 39 chr3 181656964 181657715 -36379443 + L1M4 LINE L1 4236 4990 -1156 317 319 71 39 chr3 181657805 181657987 -36379171 + MIR SINE MIR 19 206 -56 561 328 54 8 chr3 181658002 181658243 -36378915 - MIR SINE MIR -10 252 1 522 123 38 9 chr3 181658431 181658537 -36378621 + CT-rich Low_complexity Low_complexity 1 109 0 244 269 166 83 chr3 181660974 181661264 -36375894 + L3 LINE CR1 803 1116 -461 393 273 8 41 chr3 181661264 181661385 -36375773 - MER94 DNA DNA -17 117 1 27 29 0 0 chr3 181662043 181662077 -36375081 + AT_rich Low_complexity Low_complexity 1 34 0 1485 185 40 13 chr3 181662434 181662736 -36374422 + AluJo SINE Alu 3 312 0 2214 76 3 10 chr3 181662736 181663075 -36374083 + AluY SINE Alu 1 311 0 506 174 0 43 chr3 181664086 181664178 -36372980 - MER67A LTR ERV1 -455 88 1 3208 154 50 29 chr3 181664216 181664813 -36372345 - MER4D LTR ERV1 -17 886 277 1856 194 47 3 chr3 181664839 181665225 -36371933 + MER57A LTR ERV1 1 403 0 4175 156 38 28 chr3 181665227 181666589 -36370569 + MER57A-int LTR ERV1 3 1451 -4495 * 4270 144 38 7 chr3 181666580 181667300 -36369858 + MER57A-int LTR ERV1 2218 2959 -4578 1104 153 11 10 chr3 181667311 181667603 -36369555 - MER4B LTR ERV1 -15 595 261 538 130 0 93 chr3 181667603 181667711 -36369447 - MER4A LTR ERV1 -566 98 1 487 157 0 11 chr3 181667711 181667800 -36369358 + MER57A-int LTR ERV1 2953 3040 -4497 * 3340 121 99 3 chr3 181667783 181668347 -36368811 + MER57A-int LTR ERV1 3153 3770 -3767 831 170 7 13 chr3 181668339 181668492 -36368666 + MER57A-int LTR ERV1 5607 5758 -1779 * 8755 110 36 46 chr3 181668848 181669674 -36367484 + MER57A-int LTR ERV1 5737 6570 -967 3722 79 6 0 chr3 181669674 181670180 -36366978 + L1PA6 LINE L1 5633 6141 -13 8755 110 36 46 chr3 181670180 181670193 -36366965 + MER57A-int LTR ERV1 6570 6582 -955 243 0 0 0 chr3 181670193 181670220 -36366938 + (TAA)n Simple_repeat Simple_repeat 1 27 0 8755 110 36 46 chr3 181670220 181670803 -36366355 + MER57A-int LTR ERV1 6582 7146 -391 662 138 23 31 chr3 181670803 181670933 -36366225 + LTR54B LTR ERV1 3 131 -367 740 143 200 0 chr3 181670933 181671073 -36366085 + MER57A-int LTR ERV1 7279 7446 -91 1275 26 0 0 chr3 181671076 181671229 -36365929 - L1P LINE L1 -875 5271 5119 348 91 73 0 chr3 181671330 181671385 -36365773 + MER57A-int LTR ERV1 7088 7146 -391 537 150 47 31 chr3 181671385 181671512 -36365646 + LTR54B LTR ERV1 3 131 -367 702 144 209 0 chr3 181671512 181671651 -36365507 + MER57A-int LTR ERV1 7279 7446 -91 17735 35 1 1 chr3 181671654 181673822 -36363336 - L1PA4 LINE L1 -875 5271 3102 7365 26 2 0 chr3 181673822 181674693 -36362465 + L1PA4 LINE L1 5281 6155 0 506 88 0 0 chr3 181674702 181674770 -36362388 + MER57A-int LTR ERV1 7465 7532 -5 1728 214 10 38 chr3 181674786 181675183 -36361975 + MER57A LTR ERV1 14 399 -4 1216 147 24 9 chr3 181675197 181675408 -36361750 - MER4D LTR ERV1 -689 214 1 21 36 0 0 chr3 181675487 181675515 -36361643 + AT_rich Low_complexity Low_complexity 1 28 0 2452 233 15 37 chr3 181675621 181676217 -36360941 + MER67B LTR ERV1 79 661 0 415 183 49 0 chr3 181676286 181676368 -36360790 - MIR SINE MIR -102 160 75 508 294 75 32 chr3 181676487 181676674 -36360484 + MIR SINE MIR 36 230 -32 1518 199 44 25 chr3 181676674 181677040 -36360118 + THE1C LTR MaLR 1 373 -2 23 54 0 0 chr3 181678237 181678274 -36358884 + AT_rich Low_complexity Low_complexity 1 37 0 218 301 27 27 chr3 181678935 181679008 -36358150 + MER5A DNA MER1_type 67 139 -50 250 168 23 38 chr3 181680499 181680577 -36356581 + (TA)n Simple_repeat Simple_repeat 1 79 -407 2047 137 31 20 chr3 181680577 181680934 -36356224 + THE1B LTR MaLR 4 364 0 250 168 23 38 chr3 181680934 181680993 -36356165 + (TA)n Simple_repeat Simple_repeat 79 486 0 * 315 0 0 0 chr3 181680992 181681027 -36356131 + (TG)n Simple_repeat Simple_repeat 2 36 0 310 374 0 0 chr3 181681082 181681173 -36355985 - MIR SINE MIR -88 120 30 330 341 48 8 chr3 181682812 181682938 -36354220 + MIR SINE MIR 98 228 -34 289 138 25 0 chr3 181683214 181683294 -36353864 + (TA)n Simple_repeat Simple_repeat 1 82 0 910 204 0 16 chr3 181683441 181683627 -36353531 - AluJb SINE Alu -9 303 121 27 0 0 0 chr3 181684148 181684175 -36352983 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr3 181685063 181685084 -36352074 + AT_rich Low_complexity Low_complexity 1 21 0 311 257 28 0 chr3 181685382 181685491 -36351667 + (TA)n Simple_repeat Simple_repeat 2 113 0 693 309 57 79 chr3 181685871 181686754 -36350404 + ERVL LTR ERVL 4548 4923 -73 749 339 26 16 chr3 181686800 181687113 -36350045 + LTR16B LTR ERVL 1 316 -148 1237 114 4 121 chr3 181687231 181687461 -36349697 + L1MA2 LINE L1 6038 6293 -11 243 0 0 0 chr3 181687461 181687488 -36349670 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1653 137 88 0 chr3 181687490 181687753 -36349405 - AluSx SINE Alu -26 286 1 1237 114 4 121 chr3 181687753 181687800 -36349358 + L1MA2 LINE L1 6234 6285 -19 212 130 22 0 chr3 181688059 181688105 -36349053 + (ATG)n Simple_repeat Simple_repeat 2 48 0 731 167 0 7 chr3 181688918 181689062 -36348096 - L1MA3 LINE L1 0 6305 6163 3079 104 33 7 chr3 181689062 181689515 -36347643 + L1PA10 LINE L1 5692 6163 -5 2317 168 46 42 chr3 181689527 181690046 -36347112 - L1MA4 LINE L1 -143 6157 5637 1923 176 17 37 chr3 181690056 181690466 -36346692 + L1MA4 LINE L1 5254 5655 -650 34 24 0 0 chr3 181691148 181691189 -36345969 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chr3 181691339 181691363 -36345795 + AT_rich Low_complexity Low_complexity 1 24 0 184 325 75 50 chr3 181691435 181691595 -36345563 - L2 LINE L2 -146 3167 3004 1391 270 45 59 chr3 181691762 181692472 -36344686 - Charlie7 DNA MER1_type -1890 722 23 21 0 0 0 chr3 181693347 181693368 -36343790 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 181694104 181694125 -36343033 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr3 181694361 181694392 -36342766 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr3 181695930 181695952 -36341206 + AT_rich Low_complexity Low_complexity 1 22 0 1514 195 17 10 chr3 181696039 181696341 -36340817 + AluJb SINE Alu 1 304 -8 301 286 0 13 chr3 181698025 181698102 -36339056 + LTR16A LTR ERVL 88 163 -287 874 287 94 13 chr3 181698312 181698706 -36338452 + ERVL LTR ERVL 22 447 -4549 279 275 14 0 chr3 181698769 181698838 -36338320 + ERVL LTR ERVL 1026 1095 -3901 397 264 47 72 chr3 181698842 181699035 -36338123 + MLT1D LTR MaLR 1 188 -317 1172 167 40 14 chr3 181700630 181700852 -36336306 + MLT1D LTR MaLR 276 503 -2 433 233 10 10 chr3 181700938 181701041 -36336117 - Tigger1 DNA MER2_type -14 2404 2302 847 251 32 5 chr3 181701044 181701263 -36335895 + L1PA16 LINE L1 5942 6166 0 11409 157 44 8 chr3 181701264 181703435 -36333723 - Tigger1 DNA MER2_type -105 2313 35 2396 303 40 45 chr3 181703607 181704944 -36332214 + ERVL LTR ERVL 1492 2810 -2186 577 334 66 40 chr3 181704975 181705618 -36331540 + ERVL LTR ERVL 2949 3685 -2000 302 222 0 0 chr3 181705754 181705817 -36331341 + L1PA13 LINE L1 4584 4646 -1500 1003 130 0 0 chr3 181705818 181705964 -36331194 - AluSg/x SINE Alu -10 300 155 6088 98 4 11 chr3 181705964 181706741 -36330417 + L1PA13 LINE L1 4659 5429 -734 2185 120 3 0 chr3 181706741 181707040 -36330118 + AluSx SINE Alu 1 300 -12 6088 98 4 11 chr3 181707040 181707771 -36329387 + L1PA13 LINE L1 5429 6163 0 267 316 35 0 chr3 181707772 181707886 -36329272 + ERVL LTR ERVL 3829 3946 -1708 285 270 16 0 chr3 181708081 181708144 -36329014 + L2 LINE L2 3200 3263 -9 1869 199 54 11 chr3 181709882 181710324 -36326834 + MER65C LTR ERV1 1 461 0 402 71 143 0 chr3 181710498 181710568 -36326590 - MADE1 DNA Mariner 0 80 1 223 346 109 30 chr3 181711058 181711159 -36325999 - L2 LINE L2 -21 3251 3143 613 335 97 36 chr3 181711274 181711802 -36325356 - L2 LINE L2 -338 2976 2417 2402 112 8 22 chr3 181712350 181712715 -36324443 + THE1B LTR MaLR 5 364 0 9270 135 27 42 chr3 181712715 181713172 -36323986 + THE1B-int LTR MaLR 1 463 -1117 2502 33 17 0 chr3 181713172 181713473 -36323685 + AluY SINE Alu 1 306 -5 9270 135 27 42 chr3 181713473 181714619 -36322539 + THE1B-int LTR MaLR 463 1580 0 2319 146 0 6 chr3 181714619 181714983 -36322175 + THE1B LTR MaLR 1 362 -2 21 0 0 0 chr3 181716386 181716407 -36320751 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr3 181717430 181717473 -36319685 + AT_rich Low_complexity Low_complexity 1 43 0 431 279 14 7 chr3 181718482 181718629 -36318529 + MER103 DNA DNA 9 156 -10 938 89 0 0 chr3 181718713 181718836 -36318322 - AluSg/x SINE Alu -12 300 178 1159 141 0 0 chr3 181718839 181719009 -36318149 + AluSx SINE Alu 11 180 -132 204 40 0 0 chr3 181720373 181720398 -36316760 + (T)n Simple_repeat Simple_repeat 1 25 0 409 300 0 17 chr3 181720877 181720997 -36316161 + 7SK RNA RNA 6 123 -70 951 212 0 0 chr3 181721637 181721816 -36315342 + AluSx SINE Alu 1 179 -133 455 325 120 0 chr3 181722603 181722794 -36314364 - MIR SINE MIR -29 233 20 209 83 28 0 chr3 181723216 181723252 -36313906 + (TATAA)n Simple_repeat Simple_repeat 2 38 0 22 35 0 0 chr3 181723404 181723433 -36313725 + AT_rich Low_complexity Low_complexity 1 29 0 660 188 104 84 chr3 181724094 181724296 -36312862 + MLT1D LTR MaLR 3 208 -297 374 219 0 0 chr3 181724296 181724369 -36312789 + MLT1D LTR MaLR 411 483 -22 222 333 67 25 chr3 181724883 181725003 -36312155 + MER5A DNA MER1_type 60 184 -5 373 224 0 27 chr3 181725349 181725532 -36311626 + (TATG)n Simple_repeat Simple_repeat 3 180 0 451 274 81 78 chr3 181725587 181726031 -36311127 - L1MC4 LINE L1 -1219 6589 6246 2031 147 19 33 chr3 181726031 181726398 -36310760 + THE1B LTR MaLR 1 362 -2 451 274 81 78 chr3 181726398 181726578 -36310580 - L1MC4 LINE L1 -1562 6246 6068 309 308 0 50 chr3 181726697 181726879 -36310279 - L1M4 LINE L1 -2169 3977 3805 538 222 49 167 chr3 181726920 181727208 -36309950 + MER21B LTR ERV1 40 293 -570 3035 146 27 27 chr3 181727309 181727856 -36309302 - LTR10A LTR ERV1 -62 547 1 1541 263 19 24 chr3 181727900 181728277 -36308881 + L1MA2 LINE L1 88 462 -7103 322 255 27 11 chr3 181728280 181728390 -36308768 + L1MA2 LINE L1 4248 4367 -3198 5606 166 29 32 chr3 181728402 181730044 -36307114 + L1MA2 LINE L1 6089 7717 -6 595 251 74 49 chr3 181730214 181730457 -36306701 + MER21B LTR ERV1 466 714 -149 2741 224 5 8 chr3 181730461 181731091 -36306067 - L1 LINE L1 -970 5176 4549 14624 208 80 23 chr3 181731094 181733062 -36304096 - L1MA1 LINE L1 0 7721 5867 1864 152 0 39 chr3 181733062 181733371 -36303787 - AluSx SINE Alu -15 297 1 14624 208 80 23 chr3 181733371 181737888 -36299270 - L1MA1 LINE L1 -1854 5867 847 1607 198 39 15 chr3 181737888 181738221 -36298937 + MSTB LTR MaLR 86 426 0 636 197 0 8 chr3 181738222 181738344 -36298814 - L1 LINE L1 -2290 3856 3736 271 223 151 42 chr3 181738327 181738568 -36298590 - L1MCa LINE L1 -4859 1186 944 * 515 254 95 27 chr3 181738778 181739179 -36297979 - L1MEc LINE L1 -5219 1177 750 21 57 0 0 chr3 181739385 181739420 -36297738 + AT_rich Low_complexity Low_complexity 1 35 0 240 342 44 35 chr3 181739926 181740040 -36297118 + L2 LINE L2 3127 3241 -31 29 90 0 0 chr3 181740085 181740163 -36296995 + AT_rich Low_complexity Low_complexity 1 78 0 189 0 0 0 chr3 181740636 181740657 -36296501 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 1965 119 4 0 chr3 181740657 181740934 -36296224 - AluSg SINE Alu -32 278 1 2431 254 183 31 chr3 181741358 181742478 -36294680 + L1MC4 LINE L1 6510 7829 -213 2003 64 0 12 chr3 181742478 181742727 -36294431 - AluY SINE Alu -15 296 51 2431 254 183 31 chr3 181742727 181742817 -36294341 + L1MC4 LINE L1 7829 7904 -138 22 0 0 0 chr3 181743901 181743923 -36293235 + AT_rich Low_complexity Low_complexity 1 22 0 2771 157 39 35 chr3 181744352 181744924 -36292234 + MER4B LTR ERV1 1 574 -36 412 278 70 51 chr3 181746725 181747038 -36290120 + MER110A LTR ERV1 32 350 -118 205 268 18 0 chr3 181747660 181747716 -36289442 + MIR SINE MIR 97 153 -109 1196 241 88 57 chr3 181748110 181748600 -36288558 - MLT1D LTR MaLR 0 505 1 302 336 38 66 chr3 181749152 181749206 -36287952 + MIR SINE MIR 55 109 -153 2089 92 10 3 chr3 181749206 181749499 -36287659 + AluY SINE Alu 5 299 -12 302 336 38 66 chr3 181749499 181749655 -36287503 + MIR SINE MIR 109 259 -3 21 36 0 0 chr3 181750303 181750331 -36286827 + AT_rich Low_complexity Low_complexity 1 28 0 36 0 0 0 chr3 181751012 181751048 -36286110 + AT_rich Low_complexity Low_complexity 1 36 0 6224 226 69 28 chr3 181751351 181752898 -36284260 - MER52A LTR ERV1 -144 1611 1 226 209 0 0 chr3 181753876 181753919 -36283239 + CT-rich Low_complexity Low_complexity 4 46 0 1338 171 38 60 chr3 181753976 181754193 -36282965 + Cheshire DNA MER1_type 2052 2259 -161 1521 199 58 21 chr3 181754193 181754569 -36282589 + MLT1B LTR MaLR 1 390 0 1338 171 38 60 chr3 181754569 181754719 -36282439 + Cheshire DNA MER1_type 2259 2411 -9 35 41 0 0 chr3 181755856 181755905 -36281253 + AT_rich Low_complexity Low_complexity 1 49 0 344 234 24 32 chr3 181756024 181756148 -36281010 + GA-rich Low_complexity Low_complexity 4 126 0 1070 206 84 58 chr3 181756246 181756591 -36280567 - MLT1A1 LTR MaLR -11 354 1 24 0 0 0 chr3 181757004 181757028 -36280130 + AT_rich Low_complexity Low_complexity 1 24 0 915 203 72 0 chr3 181757321 181757528 -36279630 + L1MA3 LINE L1 6081 6302 -3 192 188 0 0 chr3 181757980 181758044 -36279114 + (TAA)n Simple_repeat Simple_repeat 1 64 0 21 0 0 0 chr3 181758153 181758174 -36278984 + AT_rich Low_complexity Low_complexity 1 21 0 210 37 0 0 chr3 181758350 181758377 -36278781 + (TG)n Simple_repeat Simple_repeat 1 27 0 572 274 33 43 chr3 181758477 181758897 -36278261 + L1M4 LINE L1 3073 3488 -2658 28 48 0 0 chr3 181759671 181759713 -36277445 + AT_rich Low_complexity Low_complexity 1 42 0 387 0 0 0 chr3 181760597 181760640 -36276518 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 413 211 40 59 chr3 181760656 181760808 -36276350 + L1MC5 LINE L1 7347 7495 -466 23 24 0 24 chr3 181761332 181761349 -36275809 + AT_rich Low_complexity Low_complexity 1 17 -23 17483 35 5 0 chr3 181761349 181764259 -36272899 + L1PA4 LINE L1 3231 6155 0 23 24 0 24 chr3 181764259 181764282 -36272876 + AT_rich Low_complexity Low_complexity 17 40 0 208 284 305 0 chr3 181764330 181764425 -36272733 - L2 LINE L2 -7 3306 3183 34 24 0 0 chr3 181764834 181764875 -36272283 + AT_rich Low_complexity Low_complexity 1 41 0 31 92 0 0 chr3 181765155 181765242 -36271916 + AT_rich Low_complexity Low_complexity 1 87 0 23 0 0 0 chr3 181765326 181765349 -36271809 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr3 181765559 181765605 -36271553 + AT_rich Low_complexity Low_complexity 1 46 0 25 0 0 0 chr3 181765701 181765726 -36271432 + AT_rich Low_complexity Low_complexity 1 25 0 505 294 82 6 chr3 181766366 181766536 -36270622 + MIR SINE MIR 6 188 -74 25 51 0 0 chr3 181766550 181766589 -36270569 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr3 181766610 181766638 -36270520 + AT_rich Low_complexity Low_complexity 1 28 0 180 290 58 0 chr3 181766900 181766969 -36270189 - MIR SINE MIR -71 191 119 29 28 0 0 chr3 181767318 181767354 -36269804 + AT_rich Low_complexity Low_complexity 1 36 0 42945 51 2 1 chr3 181767419 181773549 -36263609 - L1PA4 LINE L1 -3 6152 15 1543 182 0 42 chr3 181773549 181773862 -36263296 - AluJo SINE Alu -12 300 1 324 346 88 0 chr3 181774239 181774398 -36262760 - MIR SINE MIR 0 262 90 422 262 24 0 chr3 181774744 181774870 -36262288 + MER94 DNA DNA 4 132 -2 534 45 0 0 chr3 181774981 181775048 -36262110 - L1P LINE L1 -735 5419 5353 6008 39 0 24 chr3 181775048 181775800 -36261358 + L1PA5 LINE L1 5420 6154 0 219 293 66 19 chr3 181776363 181776469 -36260689 - MIR SINE MIR 0 262 152 8651 137 34 7 chr3 181776490 181777831 -36259327 + THE1B-int LTR MaLR 204 1580 0 2426 140 0 3 chr3 181777831 181778195 -36258963 + THE1B LTR MaLR 1 363 -1 1108 150 33 11 chr3 181778197 181778377 -36258781 - LTR28 LTR ERV1 -836 184 1 30 27 0 0 chr3 181778640 181778677 -36258481 + AT_rich Low_complexity Low_complexity 1 37 0 200 274 61 67 chr3 181779716 181779880 -36257278 + L2 LINE L2 1919 2081 -1233 454 328 62 31 chr3 181779885 181780205 -36256953 + L2 LINE L2 2040 2369 -945 245 397 45 19 chr3 181780493 181780649 -36256509 + L2 LINE L2 2701 2860 -454 510 61 0 0 chr3 181780930 181780996 -36256162 + (TA)n Simple_repeat Simple_repeat 2 67 0 21 36 0 0 chr3 181781681 181781709 -36255449 + AT_rich Low_complexity Low_complexity 1 28 0 328 297 73 41 chr3 181782124 181782496 -36254662 - L1MC/D LINE L1 -864 5282 5072 29 90 0 0 chr3 181782498 181782576 -36254582 + AT_rich Low_complexity Low_complexity 1 78 0 489 280 173 42 chr3 181782587 181782923 -36254235 - MLT1I LTR MaLR -4 405 26 453 245 95 20 chr3 181783547 181783694 -36253464 + L1MA9 LINE L1 6130 6287 -25 307 195 35 11 chr3 181783881 181783968 -36253190 - L1MC/D LINE L1 -1488 4658 4570 249 195 0 0 chr3 181784182 181784223 -36252935 - MER4A LTR ERV1 -60 604 564 2078 118 0 16 chr3 181786877 181787182 -36249976 - AluSq SINE Alu -12 301 2 1122 170 209 0 chr3 181787964 181788223 -36248935 - L1MB1 LINE L1 -14 6154 5842 1974 125 0 0 chr3 181788246 181788525 -36248633 + AluSx SINE Alu 1 279 -33 191 88 29 0 chr3 181788525 181788559 -36248599 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 308 326 79 11 chr3 181788565 181788743 -36248415 - HAL1 LINE L1 -48 2459 2270 397 130 280 0 chr3 181789073 181789173 -36247985 - AluJb SINE Alu -56 246 119 1644 169 4 7 chr3 181789193 181789472 -36247686 - AluSx SINE Alu -32 280 3 432 338 159 24 chr3 181789927 181790341 -36246817 - HAL1 LINE L1 -741 1766 1297 1774 182 51 33 chr3 181790349 181790893 -36246265 + MLT2A2 LTR ERVL 1 546 -8 270 196 20 0 chr3 181790963 181791014 -36246144 + Tigger1 DNA MER2_type 2 53 -2365 4801 163 51 20 chr3 181791014 181791934 -36245224 + Tigger1 DNA MER2_type 1470 2418 0 23 54 0 0 chr3 181793025 181793062 -36244096 + AT_rich Low_complexity Low_complexity 1 37 0 1756 64 4 8 chr3 181794122 181794356 -36242802 - L1PA7 LINE L1 -12 6142 5910 4613 71 3 2 chr3 181794356 181794964 -36242194 + L1PA7 LINE L1 5300 5908 -246 276 329 45 45 chr3 181795446 181795601 -36241557 - MIR3 SINE MIR -31 177 23 265 335 62 34 chr3 181795895 181796074 -36241084 + L2 LINE L2 3130 3313 0 3860 224 85 53 chr3 181796938 181797643 -36239515 + L1MC2 LINE L1 3696 4377 -1967 2147 75 0 3 chr3 181797643 181797965 -36239193 + AluY SINE Alu 1 321 0 3860 224 85 53 chr3 181797965 181799580 -36237578 + L1MC2 LINE L1 4377 6200 -144 583 301 11 27 chr3 181799616 181799802 -36237356 - MER74B LTR ERVL -393 229 47 240 292 45 0 chr3 181800695 181800784 -36236374 - L2 LINE L2 0 3313 3221 1888 71 4 0 chr3 181800787 181801040 -36236118 - L1PA7 LINE L1 -1 6153 5900 2231 60 40 3 chr3 181801040 181801340 -36235818 - AluY SINE Alu 0 311 1 4068 200 75 50 chr3 181801352 181802448 -36234710 - L1MC3 LINE L1 -187 7598 6476 806 265 94 68 chr3 181802454 181802910 -36234248 - L1MCb LINE L1 -5373 672 205 358 308 41 105 chr3 181803093 181803437 -36233721 - L2 LINE L2 -627 2687 2366 30 0 0 0 chr3 181803792 181803822 -36233336 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr3 181804052 181804082 -36233076 + AT_rich Low_complexity Low_complexity 1 30 0 1863 145 3 13 chr3 181805085 181805388 -36231770 - AluSx SINE Alu -12 300 1 396 0 0 0 chr3 181805419 181805463 -36231695 + (TG)n Simple_repeat Simple_repeat 1 44 0 341 325 96 6 chr3 181805634 181805791 -36231367 + MIR SINE MIR 78 248 -14 25 0 0 0 chr3 181806029 181806054 -36231104 + AT_rich Low_complexity Low_complexity 1 25 0 7490 199 55 19 chr3 181806751 181809551 -36227607 + L1PA16 LINE L1 3236 6133 -33 23 33 0 0 chr3 181810033 181810063 -36227095 + AT_rich Low_complexity Low_complexity 1 30 0 34 24 0 0 chr3 181811548 181811589 -36225569 + AT_rich Low_complexity Low_complexity 1 41 0 218 229 26 52 chr3 181811648 181811801 -36225357 + (TTATA)n Simple_repeat Simple_repeat 5 153 0 * 242 270 44 15 chr3 181811707 181811844 -36225314 + (TATATG)n Simple_repeat Simple_repeat 4 144 0 345 273 73 9 chr3 181812240 181812350 -36224808 - MIR SINE MIR -80 182 66 397 293 110 6 chr3 181812363 181812527 -36224631 + MIR SINE MIR 49 229 -33 469 238 75 103 chr3 181812935 181813523 -36223635 - MLT1H1 LTR MaLR -8 547 1 349 373 32 14 chr3 181813624 181813844 -36223314 - L1ME4a LINE L1 -281 5840 5617 22 35 0 0 chr3 181814931 181814960 -36222198 + AT_rich Low_complexity Low_complexity 1 29 0 2137 116 0 3 chr3 181815221 181815514 -36221644 + AluSq SINE Alu 1 292 -21 23 0 0 0 chr3 181815515 181815538 -36221620 + AT_rich Low_complexity Low_complexity 1 23 0 217 132 0 0 chr3 181816109 181816147 -36221011 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 364 340 69 13 chr3 181816685 181816844 -36220314 - MIR3 SINE MIR -5 203 36 201 94 0 0 chr3 181817026 181817058 -36220100 + (TG)n Simple_repeat Simple_repeat 2 33 0 300 270 117 31 chr3 181818274 181818437 -36218721 - MIR SINE MIR -5 257 81 219 288 44 75 chr3 181819115 181819214 -36217944 + L2 LINE L2 751 845 -2469 2096 127 48 23 chr3 181819214 181819568 -36217590 - THE1B LTR MaLR -1 363 1 219 288 44 75 chr3 181819568 181819628 -36217530 + L2 LINE L2 845 905 -2409 21 100 0 0 chr3 181819978 181820048 -36217110 + AT_rich Low_complexity Low_complexity 1 70 0 25 0 0 0 chr3 181821572 181821597 -36215561 + AT_rich Low_complexity Low_complexity 1 25 0 184 213 128 0 chr3 181822052 181822099 -36215059 + MIR SINE MIR 207 259 -3 457 323 64 53 chr3 181822351 181822710 -36214448 - MLT1J1 LTR MaLR -7 439 77 22 0 0 0 chr3 181822922 181822944 -36214214 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr3 181823751 181823783 -36213375 + AT_rich Low_complexity Low_complexity 1 32 0 342 61 0 0 chr3 181823919 181823968 -36213190 + (CA)n Simple_repeat Simple_repeat 2 50 0 23 78 0 0 chr3 181825161 181825212 -36211946 + AT_rich Low_complexity Low_complexity 1 51 0 282 308 93 33 chr3 181826443 181826745 -36210413 - L1MEd LINE L1 -4882 1237 918 251 244 61 17 chr3 181826768 181826883 -36210275 - L1MEd LINE L1 -5242 877 758 21 36 0 0 chr3 181828691 181828719 -36208439 + AT_rich Low_complexity Low_complexity 1 28 0 47 44 0 0 chr3 181828786 181828854 -36208304 + AT_rich Low_complexity Low_complexity 1 68 0 24 0 0 0 chr3 181829065 181829089 -36208069 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr3 181829350 181829386 -36207772 + AT_rich Low_complexity Low_complexity 1 36 0 3379 222 11 30 chr3 181829636 181830383 -36206775 + L1PA16 LINE L1 1 733 -6116 11338 235 35 20 chr3 181830856 181836070 -36201088 + L1PA16 LINE L1 1432 6852 -17 257 284 15 0 chr3 181836587 181836654 -36200504 + HERV16 LTR ERVL 600 667 -4329 726 90 54 0 chr3 181837144 181837255 -36199903 - L1MA9 LINE L1 -394 5918 5802 1789 186 35 20 chr3 181837255 181837654 -36199504 + L1MA9 LINE L1 5899 6308 -4 813 338 34 14 chr3 181837656 181838005 -36199153 + HERV16 LTR ERVL 1066 1421 -3575 475 319 96 13 chr3 181838122 181838484 -36198674 + HERV16 LTR ERVL 1600 2039 -2957 1229 324 64 55 chr3 181838513 181838711 -36198447 + HERV16 LTR ERVL 2110 2305 -2691 2343 98 0 0 chr3 181838711 181839017 -36198141 - AluY SINE Alu -5 306 1 1229 324 64 55 chr3 181839017 181839772 -36197386 + HERV16 LTR ERVL 2305 3072 -1924 275 350 17 0 chr3 181840053 181840173 -36196985 + HERV16 LTR ERVL 3523 3644 -1352 602 372 2 0 chr3 181840324 181840637 -36196521 + HERV16 LTR ERVL 4028 4118 -878 1899 185 31 40 chr3 181840654 181841212 -36195946 - MLT2A2 LTR ERVL 0 554 1 288 302 28 0 chr3 181841478 181841584 -36195574 + HERV16 LTR ERVL 4728 4836 -649 4069 211 21 13 chr3 181841699 181843009 -36194149 - L1PB4 LINE L1 -4 6152 4831 1751 224 23 50 chr3 181843004 181843561 -36193597 + L1 LINE L1 4168 4709 -1437 * 1298 131 0 11 chr3 181843564 181843755 -36193403 + AluSg/x SINE Alu 109 297 -15 304 325 13 13 chr3 181843969 181844126 -36193032 + LTR16B LTR ERVL 296 452 -12 185 274 0 20 chr3 181844226 181844277 -36192881 - L2 LINE L2 -4 3268 3219 344 297 28 39 chr3 181844513 181844716 -36192442 + MLT1G3 LTR MaLR 1 207 -388 2656 211 14 12 chr3 181844961 181845934 -36191224 - L1P5 LINE L1 -350 5806 4831 1751 224 23 50 chr3 181845929 181846486 -36190672 + L1 LINE L1 4168 4709 -1437 * 852 121 0 0 chr3 181846489 181846605 -36190553 + AluSc SINE Alu 107 222 -87 765 115 0 0 chr3 181846605 181846718 -36190440 + L1 LINE L1 4718 4830 -1316 207 0 0 0 chr3 181847015 181847038 -36190120 + (CA)n Simple_repeat Simple_repeat 2 24 0 2153 114 3 7 chr3 181847304 181847602 -36189556 + AluSx SINE Alu 1 297 -15 306 312 19 19 chr3 181847816 181847973 -36189185 + LTR16B LTR ERVL 296 452 -12 185 274 0 20 chr3 181848073 181848124 -36189034 - L2 LINE L2 -4 3268 3219 415 266 64 44 chr3 181848360 181848563 -36188595 + MLT1G1 LTR MaLR 1 207 -388 473 278 263 5 chr3 181848742 181848940 -36188218 + MLT1G1 LTR MaLR 340 593 -2 1966 161 0 0 chr3 181850053 181850363 -36186795 - AluSx SINE Alu -1 311 2 300 246 142 22 chr3 181850713 181850847 -36186311 - LTR50 LTR ERVL -159 636 487 335 249 195 0 chr3 181850969 181851138 -36186020 - LTR50 LTR ERVL -585 210 9 206 378 51 10 chr3 181851231 181851329 -36185829 - L2 LINE L2 -17 3255 3154 21 71 0 0 chr3 181851341 181851383 -36185775 + AT_rich Low_complexity Low_complexity 1 42 0 653 185 8 0 chr3 181851468 181851587 -36185571 - AluSp/q SINE Alu -18 295 176 4827 226 49 37 chr3 181851587 181853568 -36183590 - L1M4 LINE L1 -464 6531 4521 525 32 0 0 chr3 181853568 181853631 -36183527 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 4827 226 49 37 chr3 181853631 181853835 -36183323 - L1M4 LINE L1 -2474 4521 4321 1242 260 35 43 chr3 181853828 181854494 -36182664 - L1M4 LINE L1 -2880 4077 3418 * 330 143 0 43 chr3 181854561 181854631 -36182527 - L1M4 LINE L1 -5411 1448 1382 306 0 0 0 chr3 181854632 181854666 -36182492 + (TTG)n Simple_repeat Simple_repeat 2 35 0 366 78 0 0 chr3 181854683 181854734 -36182424 + Alu SINE Alu 250 300 -2 2271 99 0 7 chr3 181854745 181855049 -36182109 + AluSc SINE Alu 1 302 -7 1164 218 23 129 chr3 181855049 181855144 -36182014 - L1M4 LINE L1 -5491 1368 1265 246 32 0 0 chr3 181855144 181855175 -36181983 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1526 110 5 0 chr3 181855178 181855397 -36181761 - L1PB1 LINE L1 -7 6144 5925 1164 218 23 129 chr3 181855397 181855770 -36181388 - L1M4 LINE L1 -5596 1263 946 * 2332 207 67 106 chr3 181855764 181856160 -36180998 - L1MCa LINE L1 -4772 1654 1244 2743 20 0 0 chr3 181856160 181856464 -36180694 - AluY SINE Alu -7 304 1 2332 207 67 106 chr3 181856464 181856804 -36180354 - L1MCa LINE L1 -5182 1244 892 1559 215 67 6 chr3 181856804 181857148 -36180010 + MLT1A1 LTR MaLR 1 365 0 2332 207 67 106 chr3 181857148 181857509 -36179649 - L1MCa LINE L1 -5534 892 518 2220 66 63 0 chr3 181857509 181857795 -36179363 - AluY SINE Alu -7 304 1 2332 207 67 106 chr3 181857795 181858588 -36178570 - L1MCa LINE L1 -5908 518 60 866 305 67 30 chr3 181858698 181859374 -36177784 - L1M4 LINE L1 -2440 3706 3006 411 284 58 14 chr3 181859343 181859691 -36177467 - L1MEc LINE L1 -2751 3395 3033 * 884 240 44 48 chr3 181859692 181860105 -36177053 - L1MEc LINE L1 -3224 2991 2581 440 218 109 19 chr3 181860159 181860315 -36176843 - L1MD3 LINE L1 -8 7987 7818 738 261 32 44 chr3 181860328 181860817 -36176341 - L1MEc LINE L1 -3665 2550 2110 2082 143 19 26 chr3 181861021 181861399 -36175759 + THE1C LTR MaLR 1 375 0 9666 140 32 8 chr3 181861399 181862937 -36174221 + THE1C-int LTR MaLR 1 1575 -5 2318 142 25 3 chr3 181862942 181863309 -36173849 + THE1C LTR MaLR 1 375 0 28 29 0 0 chr3 181863669 181863704 -36173454 + AT_rich Low_complexity Low_complexity 1 35 0 805 212 54 30 chr3 181864594 181864701 -36172457 - MER6B DNA MER2_type -656 209 106 1730 161 122 3 chr3 181864701 181865036 -36172122 + THE1C LTR MaLR 1 375 0 805 212 54 30 chr3 181865036 181865131 -36172027 - MER6B DNA MER2_type -759 106 2 306 0 0 0 chr3 181866535 181866569 -36170589 + (TG)n Simple_repeat Simple_repeat 2 35 0 23 33 0 0 chr3 181867535 181867565 -36169593 + AT_rich Low_complexity Low_complexity 1 30 0 266 339 85 27 chr3 181868179 181868403 -36168755 - MIR SINE MIR -6 256 20 22 0 0 0 chr3 181869140 181869162 -36167996 + AT_rich Low_complexity Low_complexity 1 22 0 228 122 0 0 chr3 181870415 181870456 -36166702 + (CA)n Simple_repeat Simple_repeat 2 42 0 688 122 0 0 chr3 181870874 181870972 -36166186 + THE1B LTR MaLR 267 364 0 47 19 0 0 chr3 181871442 181871496 -36165662 + AT_rich Low_complexity Low_complexity 1 54 0 621 181 16 0 chr3 181871549 181871676 -36165482 + L1MB5 LINE L1 5789 5917 -257 284 163 0 0 chr3 181871674 181871723 -36165435 + L1MD3 LINE L1 7647 7695 -300 * 3338 171 8 27 chr3 181871713 181872308 -36164850 + L1M1 LINE L1 1600 2183 -5382 * 8771 206 15 11 chr3 181872289 181874501 -36162657 + L1M1 LINE L1 4647 6870 -743 4769 83 18 5 chr3 181874495 181875398 -36161760 - L1PA7 LINE L1 -218 5936 5020 * 638 57 0 11 chr3 181875399 181875487 -36161671 - Alu SINE Alu -4 308 222 3341 191 8 21 chr3 181875511 181876030 -36161128 - L1M1 LINE L1 -6938 627 116 2497 54 0 32 chr3 181876030 181876346 -36160812 - AluY SINE Alu -5 306 1 3341 191 8 21 chr3 181876346 181876448 -36160710 - L1M1 LINE L1 -7449 116 14 24104 148 17 25 chr3 181877144 181880073 -36157085 - L1PA8A LINE L1 0 6446 3493 2273 70 42 0 chr3 181880073 181880359 -36156799 + AluY SINE Alu 1 298 -13 24104 148 17 25 chr3 181880359 181883863 -36153295 - L1PA8A LINE L1 -2953 3493 14 225 361 71 13 chr3 181884399 181884554 -36152604 - L2 LINE L2 -554 2760 2597 512 280 18 60 chr3 181884696 181884914 -36152244 + MER63A DNA MER1_type 1 209 -1 617 160 83 0 chr3 181884998 181885142 -36152016 - L1MA9 LINE L1 0 6312 6157 253 242 113 0 chr3 181885148 181885210 -36151948 + 5S rRNA rRNA 20 88 -33 * 736 211 43 77 chr3 181885208 181885416 -36151742 - MER20 DNA MER1_type -17 202 2 218 250 0 17 chr3 181885446 181885506 -36151652 + CT-rich Low_complexity Low_complexity 2 60 0 201 259 19 0 chr3 181886155 181886209 -36150949 + GA-rich Low_complexity Low_complexity 3 57 0 3167 202 14 47 chr3 181886848 181887617 -36149541 + L1PA15 LINE L1 4095 4838 -1308 2412 103 128 5 chr3 181887617 181888016 -36149142 + LTR7 LTR ERV1 1 448 -2 19315 86 38 21 chr3 181888018 181891774 -36145384 + HERVH LTR ERV1 1 3993 -3720 4440 139 3 1 chr3 181891770 181892439 -36144719 + HERVH LTR ERV1 4480 5149 -2564 * 1385 126 23 0 chr3 181892440 181892655 -36144503 + HERVH LTR ERV1 5600 5819 -1894 2254 111 48 13 chr3 181892655 181893032 -36144126 + HERVH LTR ERV1 7324 7713 0 2469 88 128 5 chr3 181893032 181893431 -36143727 + LTR7 LTR ERV1 1 448 -2 5401 140 12 2 chr3 181893433 181894747 -36142411 + L1PA15 LINE L1 4834 6165 0 274 250 0 0 chr3 181894773 181894837 -36142321 - L1ME LINE L1 -575 5587 5524 206 177 0 32 chr3 181895219 181895281 -36141877 + GA-rich Low_complexity Low_complexity 2 61 0 1117 241 78 28 chr3 181895341 181895702 -36141456 + L1MD2 LINE L1 5978 6356 -3 6936 229 19 9 chr3 181946841 181948543 -36088615 - L1P LINE L1 -2779 3367 1649 4517 269 40 27 chr3 181948546 181951171 -36085987 + L1PA12 LINE L1 1030 3681 -3903 3133 223 37 12 chr3 181951163 181951918 -36085240 + L1PA12 LINE L1 4864 5637 -1947 * 21 36 0 0 chr3 181951981 181952009 -36085149 + AT_rich Low_complexity Low_complexity 1 28 0 359 235 38 68 chr3 181952042 181952174 -36084984 - MLT1H LTR MaLR -15 534 397 572 254 85 16 chr3 181952185 181952374 -36084784 - MER63A DNA MER1_type -6 204 3 1077 143 131 55 chr3 181952492 181952729 -36084429 + MSTA LTR MaLR 174 428 0 302 319 66 18 chr3 181952866 181953032 -36084126 + MIR SINE MIR 89 262 0 1948 181 49 10 chr3 181954052 181954461 -36082697 - MSTA LTR MaLR -2 426 2 2421 202 8 16 chr3 181954462 181954952 -36082206 - MSTA-int LTR MaLR 0 1651 1166 2187 170 57 0 chr3 181954960 181955365 -36081793 - MSTA LTR MaLR 0 428 1 23 0 0 0 chr3 181956866 181956889 -36080269 + AT_rich Low_complexity Low_complexity 1 23 0 1482 234 57 44 chr3 181957684 181958180 -36078978 - MLT1D LTR MaLR -3 502 1 234 174 0 0 chr3 181958207 181958253 -36078905 + CT-rich Low_complexity Low_complexity 2 47 0 188 146 83 62 chr3 181958311 181958359 -36078799 + L2 LINE L2 3184 3232 -40 41 36 0 0 chr3 181960305 181960360 -36076798 + AT_rich Low_complexity Low_complexity 1 55 0 204 337 56 11 chr3 181960436 181960525 -36076633 + MIR SINE MIR 80 172 -90 678 112 0 0 chr3 181960794 181960892 -36076266 - MER41B LTR ERV1 0 635 538 * 2903 85 5 2 chr3 181960889 181961291 -36075867 - MER41A LTR ERV1 -151 403 1 22 70 0 0 chr3 181961309 181961352 -36075806 + AT_rich Low_complexity Low_complexity 1 43 0 248 274 65 57 chr3 181961430 181961555 -36075603 + HAL1 LINE L1 1166 1289 -1218 2232 103 0 0 chr3 181961555 181961866 -36075292 + AluY SINE Alu 1 311 0 248 274 65 57 chr3 181961866 181961988 -36075170 + HAL1 LINE L1 1289 1415 -1092 473 220 103 23 chr3 181961993 181962207 -36074951 + L1M4 LINE L1 5128 5358 -788 245 179 0 107 chr3 181962458 181962509 -36074649 - L1MA10 LINE L1 0 6334 6294 1909 125 13 7 chr3 181962509 181962813 -36074345 + AluSx SINE Alu 1 306 -6 245 179 0 107 chr3 181962813 181962845 -36074313 - L1MA10 LINE L1 -40 6294 6260 461 252 20 7 chr3 181962952 181963099 -36074059 + AluSg/x SINE Alu 158 306 -6 3300 206 99 20 chr3 181963101 181964064 -36073094 - L1MB1 LINE L1 -8 6160 5293 211 91 23 23 chr3 181964067 181964111 -36073047 + (TTTC)n Simple_repeat Simple_repeat 4 47 0 890 159 0 6 chr3 181964111 181964274 -36072884 - L1MB1 LINE L1 -844 5302 5141 344 228 69 36 chr3 181964967 181965237 -36071921 + L1ME3 LINE L1 5154 5430 -732 1302 252 52 7 chr3 181965248 181965653 -36071505 + L1ME3 LINE L1 5542 5964 -200 462 228 0 0 chr3 181965664 181965743 -36071415 + MER21B LTR ERV1 12 90 -773 2361 278 69 23 chr3 181965766 181966515 -36070643 + MER21B LTR ERV1 20 803 -60 695 269 55 10 chr3 181966553 181966754 -36070404 + L1ME3 LINE L1 5952 6161 -1 1146 119 144 5 chr3 181966908 181967109 -36070049 - MER30 DNA MER1_type -1 229 1 434 328 48 29 chr3 181967727 181968139 -36069019 + L1M4 LINE L1 3617 4036 -2110 285 260 150 46 chr3 181968686 181968859 -36068299 - L2 LINE L2 0 3313 3123 413 301 135 38 chr3 181969022 181969341 -36067817 + L2 LINE L2 2451 2800 -514 236 350 57 31 chr3 181969360 181969554 -36067604 + L2 LINE L2 2923 3121 -192 2052 115 14 0 chr3 181969570 181969858 -36067300 - AluSg SINE Alu -18 292 1 23 0 0 0 chr3 181970165 181970188 -36066970 + AT_rich Low_complexity Low_complexity 1 23 0 271 213 16 49 chr3 181971177 181971238 -36065920 + AluJo SINE Alu 1 53 -255 3862 144 85 78 chr3 181971238 181972666 -36064492 + pTR5 LTR ERV1 750 2422 -16 442 177 31 21 chr3 181972666 181972762 -36064396 + AluJo SINE Alu 30 126 -186 856 196 6 13 chr3 181972774 181972932 -36064226 + AluJo SINE Alu 137 293 -9 6075 82 22 12 chr3 181974040 181974369 -36062789 - L1PA10 LINE L1 -11 6157 5833 2074 128 0 13 chr3 181974369 181974667 -36062491 - AluSq SINE Alu -19 294 1 6075 82 22 12 chr3 181974667 181975583 -36061575 - L1PA10 LINE L1 -335 5833 4909 10346 218 40 36 chr3 181975583 181978866 -36058292 - L1P3 LINE L1 -3007 3454 44 22 35 0 0 chr3 181979511 181979540 -36057618 + AT_rich Low_complexity Low_complexity 1 29 0 556 292 141 14 chr3 181979783 181980222 -36056936 - L1ME3A LINE L1 -213 5957 5463 247 241 0 0 chr3 181980421 181980479 -36056679 - L1ME3A LINE L1 -706 5458 5401 30 27 0 0 chr3 181981739 181981776 -36055382 + AT_rich Low_complexity Low_complexity 1 37 0 300 305 141 0 chr3 181982245 181982373 -36054785 - MIR SINE MIR -56 206 61 916 146 34 17 chr3 181982754 181982932 -36054226 + MER5A DNA MER1_type 5 185 -4 2367 47 20 10 chr3 181983250 181983551 -36053607 + AluY SINE Alu 2 305 -6 22 56 0 0 chr3 181984353 181984389 -36052769 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr3 181984613 181984642 -36052516 + AT_rich Low_complexity Low_complexity 1 29 0 641 143 0 25 chr3 181985383 181985502 -36051656 - THE1B LTR MaLR 0 364 249 24 91 0 0 chr3 181985648 181985714 -36051444 + AT_rich Low_complexity Low_complexity 1 66 0 34 42 0 0 chr3 181985733 181985781 -36051377 + AT_rich Low_complexity Low_complexity 1 48 0 26 0 0 0 chr3 181985825 181985851 -36051307 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 181986315 181986336 -36050822 + AT_rich Low_complexity Low_complexity 1 21 0 1288 188 126 57 chr3 181986608 181987045 -36050113 - MLT1C LTR MaLR 0 467 1 403 125 48 0 chr3 181987104 181987208 -36049950 + (TA)n Simple_repeat Simple_repeat 1 109 0 7266 36 8 0 chr3 181987855 181988741 -36048417 - L1P LINE L1 -1075 5071 4179 433 236 0 9 chr3 181988749 181988855 -36048303 + L1 LINE L1 3951 4055 -2091 * 5135 249 37 24 chr3 181988843 181991015 -36046143 + L1 LINE L1 1433 3627 -2519 228 233 0 0 chr3 181991210 181991283 -36045875 + A-rich Low_complexity Low_complexity 1 73 0 268 218 27 27 chr3 181991302 181991412 -36045746 + A-rich Low_complexity Low_complexity 2 111 0 22 0 0 0 chr3 181991558 181991580 -36045578 + AT_rich Low_complexity Low_complexity 1 22 0 591 249 34 34 chr3 181991826 181992063 -36045095 - L1MC5 LINE L1 -436 7525 7289 3140 217 16 33 chr3 181992312 181993141 -36044017 - L1PA16 LINE L1 -839 5307 4493 4731 151 12 42 chr3 181993156 181994042 -36043116 + L1PA16 LINE L1 5306 6165 -1 580 211 122 104 chr3 181994008 181994402 -36042756 - L1MC5 LINE L1 -928 7033 6633 * 265 282 0 0 chr3 181994589 181994667 -36042491 + L1ME3A LINE L1 3334 3411 -2735 1910 232 17 18 chr3 181994679 181995362 -36041796 + L1ME3A LINE L1 4822 5499 -743 2452 74 0 3 chr3 181995384 181995696 -36041462 + AluY SINE Alu 1 311 0 292 304 86 69 chr3 181995703 181996006 -36041152 + L1ME3A LINE L1 5652 5959 -211 344 225 55 123 chr3 181996345 181996802 -36040356 - L1MEd LINE L1 -4985 1134 709 372 327 88 73 chr3 181997018 181997553 -36039605 - L1MEd LINE L1 -5574 545 3 540 359 33 4 chr3 181997721 181997966 -36039192 + L2 LINE L2 2326 2577 -737 2438 53 0 7 chr3 181998964 181999266 -36037892 - AluY SINE Alu -11 300 1 26 0 0 0 chr3 181999717 181999743 -36037415 + AT_rich Low_complexity Low_complexity 1 26 0 352 298 121 40 chr3 181999957 182000155 -36037003 - L2 LINE L2 -5 3308 3095 25 0 0 0 chr3 182000591 182000616 -36036542 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr3 182001160 182001195 -36035963 + AT_rich Low_complexity Low_complexity 1 35 0 198 0 0 0 chr3 182001274 182001296 -36035862 + (CAA)n Simple_repeat Simple_repeat 1 22 0 309 230 96 44 chr3 182001324 182001459 -36035699 - MIR SINE MIR -49 213 72 21 57 0 0 chr3 182001895 182001930 -36035228 + AT_rich Low_complexity Low_complexity 1 35 0 352 233 0 0 chr3 182002046 182002106 -36035052 + MER52A LTR ERV1 1 60 -1695 5064 206 239 23 chr3 182002570 182003962 -36033196 + MER52A LTR ERV1 56 1747 -8 247 333 63 24 chr3 182005943 182006069 -36031089 - L2 LINE L2 0 3313 3183 6945 220 6 10 chr3 182006236 182006975 -36030183 - L1 LINE L1 -801 5345 4604 2409 74 0 0 chr3 182006975 182007272 -36029886 - AluY SINE Alu -14 297 1 6945 220 6 10 chr3 182007272 182008180 -36028978 - L1 LINE L1 -1542 4604 3706 2419 103 41 0 chr3 182008180 182008547 -36028611 + L1P5 LINE L1 5390 5771 -380 271 156 52 0 chr3 182008549 182008626 -36028532 + (TA)n Simple_repeat Simple_repeat 2 82 0 201 400 0 0 chr3 182008631 182008706 -36028452 - L2 LINE L2 -998 2316 2242 246 81 0 0 chr3 182008707 182008744 -36028414 + (TA)n Simple_repeat Simple_repeat 1 37 0 452 119 0 0 chr3 182008744 182008811 -36028347 + L1PB2 LINE L1 5796 5862 -289 532 306 258 16 chr3 182008815 182009125 -36028033 - L2 LINE L2 -745 2569 2185 833 282 19 0 chr3 182009407 182009616 -36027542 + MLT1E LTR MaLR 375 587 -6 23 0 0 0 chr3 182009624 182009647 -36027511 + AT_rich Low_complexity Low_complexity 1 23 0 8210 190 35 12 chr3 182009696 182011306 -36025852 + MSTA-int LTR MaLR 5 1651 0 2366 148 57 2 chr3 182011306 182011712 -36025446 + MSTA LTR MaLR 1 428 0 1110 237 48 6 chr3 182011715 182012073 -36025085 + L1MA8 LINE L1 3221 3593 -2553 215 180 34 34 chr3 182012181 182012270 -36024888 + (CAA)n Simple_repeat Simple_repeat 1 89 0 * 257 237 46 29 chr3 182012209 182012382 -36024776 + (CACAA)n Simple_repeat Simple_repeat 2 177 0 * 386 196 11 74 chr3 182012335 182012524 -36024634 + A-rich Low_complexity Low_complexity 3 179 0 6398 220 33 19 chr3 182012613 182014937 -36022221 + L1MA8 LINE L1 3589 5941 -350 355 278 17 23 chr3 182015096 182015339 -36021819 + A-rich Low_complexity Low_complexity 1 241 0 352 271 143 84 chr3 182015699 182016470 -36020688 + L1MEc LINE L1 1390 2354 -4209 2469 198 32 13 chr3 182016682 182017212 -36019946 + L1MEc LINE L1 3792 4331 -2051 * 2891 147 24 0 chr3 182017209 182017722 -36019436 + L1PB3 LINE L1 5209 5744 -410 541 125 0 0 chr3 182017851 182017939 -36019219 + L1PB3 LINE L1 6067 6154 0 3479 119 0 6 chr3 182017948 182018486 -36018672 + L1MA3 LINE L1 5769 6303 -2 3468 57 18 0 chr3 182018713 182019149 -36018009 - MLT2A1 LTR ERVL 0 444 1 19884 83 6 6 chr3 182019149 182021785 -36015373 - HERVL-A1 LTR ERVL 0 5654 3018 561 15 0 0 chr3 182021786 182021852 -36015306 - MLT2A1 LTR ERVL -378 66 1 292 178 10 109 chr3 182022600 182022701 -36014457 - L1MC4 LINE L1 -1340 6702 6612 224 263 11 21 chr3 182022701 182022796 -36014362 + (TA)n Simple_repeat Simple_repeat 1 94 0 230 266 16 16 chr3 182023041 182023105 -36014053 + (TATG)n Simple_repeat Simple_repeat 3 66 0 619 270 16 27 chr3 182023272 182023457 -36013701 - L2 LINE L2 -4 3309 3127 27 0 0 0 chr3 182023845 182023872 -36013286 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr3 182024404 182024433 -36012725 + AT_rich Low_complexity Low_complexity 1 29 0 180 111 0 0 chr3 182025364 182025391 -36011767 + (CATATA)n Simple_repeat Simple_repeat 1 27 0 22 35 0 0 chr3 182025768 182025797 -36011361 + AT_rich Low_complexity Low_complexity 1 29 0 237 33 0 0 chr3 182026574 182026604 -36010554 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 1054 210 20 0 chr3 182026833 182027028 -36010130 + MLT1B LTR MaLR 192 390 0 931 100 0 0 chr3 182027290 182027410 -36009748 - AluY SINE Alu -20 291 172 576 338 88 3 chr3 182027435 182027823 -36009335 - L1MC/D LINE L1 -2019 5789 5369 181 146 42 0 chr3 182028150 182028198 -36008960 + (TA)n Simple_repeat Simple_repeat 1 50 0 21 0 0 0 chr3 182028334 182028355 -36008803 + AT_rich Low_complexity Low_complexity 1 21 0 2405 44 0 35 chr3 182028907 182029225 -36007933 - AluY SINE Alu -4 307 1 21 36 0 0 chr3 182029573 182029601 -36007557 + AT_rich Low_complexity Low_complexity 1 28 0 392 336 46 40 chr3 182030084 182030408 -36006750 - L2 LINE L2 -12 3301 2976 1630 204 54 52 chr3 182030740 182031206 -36005952 + MLT1C LTR MaLR 1 467 0 317 287 204 45 chr3 182031509 182031666 -36005492 - MER5A DNA MER1_type 0 189 8 307 403 45 0 chr3 182031866 182032000 -36005158 - MER91A DNA MER1_type -38 158 19 2007 134 62 20 chr3 182032260 182032618 -36004540 - THE1C LTR MaLR -2 373 1 332 253 58 0 chr3 182033059 182033146 -36004012 + MLT1J2 LTR MaLR 45 136 -314 607 267 33 22 chr3 182033181 182033361 -36003797 + MLT1H LTR MaLR 43 224 -325 279 269 46 28 chr3 182033507 182033615 -36003543 + MLT1J1 LTR MaLR 198 307 -139 29 47 0 0 chr3 182033832 182033875 -36003283 + AT_rich Low_complexity Low_complexity 1 43 0 247 319 141 26 chr3 182034789 182034980 -36002178 + L2 LINE L2 2252 2464 -850 235 327 48 12 chr3 182035040 182035208 -36001950 - L1ME3A LINE L1 0 6170 5997 6431 88 9 31 chr3 182035244 182036588 -36000570 - L1PA7 LINE L1 0 6469 5097 297 0 0 0 chr3 182036588 182036621 -36000537 + (TG)n Simple_repeat Simple_repeat 2 34 0 6431 88 9 31 chr3 182036621 182036657 -36000501 - L1PA7 LINE L1 -1372 5097 5062 261 0 0 0 chr3 182036657 182036686 -36000472 + (CA)n Simple_repeat Simple_repeat 2 30 0 443 62 0 16 chr3 182036693 182036757 -36000401 + (TG)n Simple_repeat Simple_repeat 2 64 0 6431 88 9 31 chr3 182036757 182036914 -36000244 - L1PA7 LINE L1 -1413 5056 4946 19054 124 10 31 chr3 182037064 182040900 -35996258 - L1PA7 LINE L1 -2351 4110 273 338 303 10 0 chr3 182040903 182041002 -35996156 - L1ME3A LINE L1 -196 5974 5875 207 211 18 0 chr3 182041225 182041282 -35995876 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 357 294 101 44 chr3 182041296 182041524 -35995634 - L1ME3A LINE L1 -577 5585 5345 893 303 84 34 chr3 182041567 182042428 -35994730 - L1ME3A LINE L1 -869 5277 4362 571 258 0 0 chr3 182042428 182042548 -35994610 + FLAM_A SINE Alu 1 120 -13 893 303 84 34 chr3 182042548 182042639 -35994519 - L1ME3A LINE L1 -1784 4362 4277 631 216 7 7 chr3 182042859 182042998 -35994160 - MLT1A1 LTR MaLR 0 365 227 207 0 0 0 chr3 182043027 182043050 -35994108 + (TG)n Simple_repeat Simple_repeat 2 24 0 9846 186 29 5 chr3 182043062 182045650 -35991508 - L1PA14 LINE L1 -2 6159 3501 180 0 0 0 chr3 182045650 182045670 -35991488 + (TTG)n Simple_repeat Simple_repeat 2 21 0 9846 186 29 5 chr3 182045670 182045874 -35991284 - L1PA14 LINE L1 -2660 3501 3303 586 136 134 6 chr3 182046019 182046162 -35990996 - THE1B LTR MaLR -36 328 180 259 26 0 0 chr3 182046463 182046502 -35990656 - L1PA2 LINE L1 0 6155 6117 2044 216 44 8 chr3 182046518 182047000 -35990158 + L1MC3 LINE L1 5361 5859 -1926 13930 119 15 12 chr3 182047002 182050041 -35987117 - L1PA10 LINE L1 0 6168 3123 4988 185 26 12 chr3 182050188 182051531 -35985627 - L1PA15 LINE L1 -2 6163 4808 194 354 44 26 chr3 182051833 182051946 -35985212 - MIR SINE MIR -42 220 106 180 204 19 56 chr3 182053250 182053304 -35983854 - L2 LINE L2 -596 2718 2667 338 278 61 35 chr3 182053372 182053487 -35983671 - MIR3 SINE MIR 0 208 91 26 74 0 0 chr3 182053674 182053728 -35983430 + AT_rich Low_complexity Low_complexity 1 54 0 292 241 27 27 chr3 182053974 182054086 -35983072 - L1MC/D LINE L1 -1990 5818 5707 602 321 31 79 chr3 182054207 182054919 -35982239 + L1PA15 LINE L1 1264 2069 -5512 1117 125 0 0 chr3 182054922 182055074 -35982084 + AluSp SINE Alu 145 296 -17 15534 219 27 16 chr3 182055120 182056124 -35981034 + L1PA15 LINE L1 2452 3443 -4160 3071 127 40 2 chr3 182056124 182056619 -35980539 - MER75 DNA T2_type 0 514 1 15534 219 27 16 chr3 182056619 182060411 -35976747 + L1PA15 LINE L1 3443 7296 -307 2425 80 0 10 chr3 182060411 182060723 -35976435 - AluY SINE Alu -2 309 1 15534 219 27 16 chr3 182060723 182061027 -35976131 + L1PA15 LINE L1 7296 7595 -8 13610 192 33 20 chr3 182061245 182061678 -35975480 - L1PB3 LINE L1 0 6870 6444 324 120 0 0 chr3 182061678 182061728 -35975430 + (CA)n Simple_repeat Simple_repeat 2 51 0 13610 192 33 20 chr3 182061728 182065673 -35971485 - L1PB3 LINE L1 -426 6444 2435 692 96 39 0 chr3 182065677 182065781 -35971377 - L1PB3 LINE L1 -6753 110 3 702 176 118 0 chr3 182065976 182066112 -35971046 - MER77 LTR ERV1 -37 568 417 6628 123 26 17 chr3 182066112 182067739 -35969419 - L1PBa LINE L1 -4439 2424 634 1016 155 26 5 chr3 182067739 182067932 -35969226 - L1PBa LINE L1 -6663 200 4 2138 238 24 78 chr3 182068069 182068707 -35968451 - MER77 LTR ERV1 -2 603 1 462 400 11 11 chr3 182069295 182069470 -35967688 + MER91A DNA MER1_type 18 192 -4 511 358 39 18 chr3 182070451 182070680 -35966478 - MIR SINE MIR -27 235 2 209 273 0 18 chr3 182071012 182071067 -35966091 + MER5A DNA MER1_type 136 189 0 21 57 0 0 chr3 182073848 182073883 -35963275 + AT_rich Low_complexity Low_complexity 1 35 0 294 268 196 55 chr3 182074157 182074377 -35962781 + MIR SINE MIR 8 258 -4 272 308 38 55 chr3 182074786 182075151 -35962007 - L1MEd LINE L1 -4818 1311 962 4790 181 17 3 chr3 182075187 182076089 -35961069 - L1MA6 LINE L1 -5 6937 6024 5832 216 19 11 chr3 182076090 182077481 -35959677 - L1MA6 LINE L1 -810 5978 4577 4840 259 88 42 chr3 182077479 182079686 -35957472 - L1MA6 LINE L1 -2583 4205 1817 * 2053 112 0 14 chr3 182079686 182080018 -35957140 - AluSc SINE Alu 0 328 1 4840 259 88 42 chr3 182080018 182081853 -35955305 - L1MA6 LINE L1 -4971 1817 68 21 57 0 0 chr3 182081910 182081945 -35955213 + AT_rich Low_complexity Low_complexity 1 35 0 28 29 0 0 chr3 182082724 182082759 -35954399 + AT_rich Low_complexity Low_complexity 1 35 0 2164 117 0 13 chr3 182083412 182083728 -35953430 - AluSx SINE Alu 0 312 1 1478 220 42 11 chr3 182084519 182084873 -35952285 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr3 182084982 182085004 -35952154 + AT_rich Low_complexity Low_complexity 1 22 0 326 295 37 51 chr3 182085408 182085846 -35951312 + L1M4c LINE L1 1073 1507 -4877 1749 253 51 30 chr3 182085969 182086729 -35950429 + L1M4c LINE L1 2475 3207 -3175 213 82 61 0 chr3 182086737 182086786 -35950372 + (TA)n Simple_repeat Simple_repeat 2 53 0 24 0 0 0 chr3 182086808 182086832 -35950326 + AT_rich Low_complexity Low_complexity 1 24 0 484 259 39 75 chr3 182086891 182087146 -35950012 + L1M4c LINE L1 3838 4083 -2299 1306 206 128 3 chr3 182087163 182087445 -35949713 + MSTB LTR MaLR 1 317 -109 2928 153 54 31 chr3 182087445 182088234 -35948924 + pTR5 LTR ERV1 743 2025 -413 301 224 31 20 chr3 182088234 182088332 -35948826 + LTR30 LTR ERV1 544 642 -80 1311 98 57 0 chr3 182088333 182088527 -35948631 + LTR12 LTR ERV1 377 581 -133 570 161 11 0 chr3 182088534 182088627 -35948531 + MSTB LTR MaLR 335 428 0 6944 216 5 4 chr3 182088627 182089975 -35947183 + MSTB-int LTR MaLR 1 1350 -301 1849 31 0 0 chr3 182089994 182090216 -35946942 + L1PA4 LINE L1 5923 6144 -11 386 219 0 37 chr3 182090366 182090448 -35946710 + L1MC3 LINE L1 7103 7181 -604 4984 173 24 22 chr3 182090459 182091526 -35945632 + L1M4c LINE L1 4188 5256 -1126 2711 138 7 9 chr3 182091526 182091988 -35945170 + L1MA1 LINE L1 5840 6301 -1 765 233 12 6 chr3 182092000 182092172 -35944986 + L1MC3 LINE L1 7172 7344 -441 1428 235 32 7 chr3 182092286 182092694 -35944464 + L1MC3 LINE L1 7368 7785 0 1613 260 69 16 chr3 182092699 182093391 -35943767 + L1ME3A LINE L1 4673 5401 -745 934 179 5 47 chr3 182093404 182093594 -35943564 + AluJo SINE Alu 121 302 -10 492 276 152 23 chr3 182093614 182094079 -35943079 + L1ME3A LINE L1 5533 6072 -98 22 35 0 0 chr3 182094185 182094214 -35942944 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr3 182094323 182094348 -35942810 + AT_rich Low_complexity Low_complexity 1 25 0 213 113 0 81 chr3 182094414 182094476 -35942682 + (TTTTA)n Simple_repeat Simple_repeat 2 58 0 2159 95 0 7 chr3 182096137 182096421 -35940737 + AluSc SINE Alu 1 282 -27 216 0 0 0 chr3 182096425 182096449 -35940709 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1733 117 42 4 chr3 182096680 182096944 -35940214 - AluSq SINE Alu -39 274 1 284 311 186 27 chr3 182097898 182098208 -35938950 - L2 LINE L2 -261 3052 2708 633 195 94 20 chr3 182099503 182099652 -35937506 + MER50 LTR ERV1 9 168 -566 1664 89 21 2 chr3 182099738 182100076 -35937082 - MLT2A1 LTR ERVL -33 411 1 739 112 72 8 chr3 182100076 182100201 -35936957 - HERVL-A1 LTR ERVL 0 5654 5522 * 4276 187 0 28 chr3 182100199 182100874 -35936284 - HERVL-A1 LTR ERVL -2897 2757 2102 * 7936 76 6 7 chr3 182100872 182101913 -35935245 - HERVL-A1 LTR ERVL -4614 1040 1 429 106 1 0 chr3 182101913 182101982 -35935176 - MLT2A1 LTR ERVL 0 444 383 197 83 28 0 chr3 182102005 182102041 -35935117 + (TA)n Simple_repeat Simple_repeat 2 38 0 2970 75 31 0 chr3 182102043 182102431 -35934727 - MLT2A1 LTR ERVL -44 400 1 1237 220 87 37 chr3 182102462 182102866 -35934292 + MER50 LTR ERV1 292 715 -19 954 220 67 19 chr3 182103165 182103433 -35933725 + AluJb SINE Alu 1 281 -31 912 168 31 0 chr3 182103570 182103761 -35933397 + L1MA8 LINE L1 6085 6281 -10 681 271 0 0 chr3 182104870 182105025 -35932133 + MER63A DNA MER1_type 56 210 0 221 292 244 38 chr3 182105288 182105497 -35931661 - MIR SINE MIR -6 256 5 209 221 0 70 chr3 182106166 182106252 -35930906 + (TTAAA)n Simple_repeat Simple_repeat 3 82 0 281 262 33 0 chr3 182107094 182107155 -35930003 + MIR3 SINE MIR 105 167 -41 1215 243 33 18 chr3 182107673 182108222 -35928936 - LTR40b LTR ERVL 0 462 19 1286 219 25 0 chr3 182108886 182109164 -35927994 + AluJb SINE Alu 1 285 -27 206 0 0 65 chr3 182109167 182109198 -35927960 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 198 344 80 0 chr3 182109606 182109731 -35927427 - MIR SINE MIR -10 252 118 1892 243 92 78 chr3 182109840 182110655 -35926503 - LTR1B LTR ERV1 0 826 1 1743 178 32 32 chr3 182110655 182110871 -35926287 - HUERS-P2 LTR ERV1 0 3088 2870 233 37 0 0 chr3 182110871 182110898 -35926260 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1743 178 32 32 chr3 182110898 182111019 -35926139 - HUERS-P2 LTR ERV1 -217 2871 2751 826 148 0 0 chr3 182111016 182111138 -35926020 - MER52-int LTR ERV1 -488 6603 6482 * 2461 91 110 27 chr3 182111138 182111501 -35925657 + MLT2A1 LTR ERVL 2 404 -40 375 23 0 0 chr3 182111501 182111545 -35925613 + (CA)n Simple_repeat Simple_repeat 1 44 0 2461 91 110 27 chr3 182111545 182111590 -35925568 + MLT2A1 LTR ERVL 404 444 0 1222 81 0 0 chr3 182111598 182111747 -35925411 - AluSg SINE Alu -161 149 1 8070 151 13 4 chr3 182111748 182112410 -35924748 - MER52-int LTR ERV1 -1472 5619 4939 2637 68 3 41 chr3 182112410 182112779 -35924379 - THE1A LTR MaLR 0 355 1 8070 151 13 4 chr3 182112779 182113357 -35923801 - MER52-int LTR ERV1 -2152 4939 4368 5783 148 7 2 chr3 182113349 182114235 -35922923 - MER52-int LTR ERV1 -2635 4456 3567 * 11189 171 19 26 chr3 182114345 182116964 -35920194 - MER52-int LTR ERV1 -425 2663 852 1006 281 59 24 chr3 182117136 182117535 -35919623 - MER52-int LTR ERV1 -2512 599 210 1182 207 108 62 chr3 182117639 182118026 -35919132 - LTR1B LTR ERV1 -421 405 1 253 276 11 11 chr3 182118149 182118236 -35918922 + L2 LINE L2 1730 1816 -1498 2506 247 40 27 chr3 182118544 182119175 -35917983 + MER21B LTR ERV1 14 652 -211 25 65 0 0 chr3 182119331 182119377 -35917781 + AT_rich Low_complexity Low_complexity 1 46 0 24 0 0 0 chr3 182119705 182119729 -35917429 + AT_rich Low_complexity Low_complexity 1 24 0 26 50 0 0 chr3 182119813 182119853 -35917305 + AT_rich Low_complexity Low_complexity 1 40 0 1585 206 108 20 chr3 182119970 182120367 -35916791 + MSTB1 LTR MaLR 1 432 0 540 291 107 40 chr3 182121374 182121785 -35915373 - L2 LINE L2 -219 3053 2596 2334 106 0 3 chr3 182121995 182122306 -35914852 - AluSq SINE Alu -3 310 1 229 343 57 9 chr3 182122663 182122768 -35914390 + MIR SINE MIR 74 183 -79 294 29 0 0 chr3 182122772 182122807 -35914351 + (CA)n Simple_repeat Simple_repeat 1 35 0 186 103 0 0 chr3 182122943 182122972 -35914186 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 200 216 0 20 chr3 182124323 182124374 -35912784 + (TATG)n Simple_repeat Simple_repeat 1 50 0 1819 146 52 38 chr3 182125426 182125795 -35911363 - THE1C LTR MaLR 0 375 2 9268 139 7 42 chr3 182125798 182127430 -35909728 - THE1C-int LTR MaLR -2 1578 4 1781 142 65 44 chr3 182127433 182127800 -35909358 - THE1C LTR MaLR 0 375 1 200 216 0 0 chr3 182128003 182128040 -35909118 + (CATA)n Simple_repeat Simple_repeat 4 40 0 976 198 0 0 chr3 182128425 182128622 -35908536 + FAM SINE Alu 1 61 0 24 0 0 0 chr3 182129109 182129133 -35908025 + AT_rich Low_complexity Low_complexity 1 24 0 1055 215 72 74 chr3 182130658 182131021 -35906137 - MER57A LTR ERV1 0 403 42 815 173 13 0 chr3 182131376 182131526 -35905632 + L1MB1 LINE L1 6017 6168 0 426 39 0 0 chr3 182132067 182132119 -35905039 + (TG)n Simple_repeat Simple_repeat 2 53 0 358 105 0 26 chr3 182132444 182132520 -35904638 + (TCTCCC)n Simple_repeat Simple_repeat 4 77 0 552 316 63 16 chr3 182132697 182132950 -35904208 + L1MCb LINE L1 167 431 -5614 1953 125 3 28 chr3 182132952 182133264 -35903894 + AluSx SINE Alu 1 305 0 315 214 0 0 chr3 182133266 182133336 -35903822 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 2382 229 127 27 chr3 182133390 182133821 -35903337 + L1MCb LINE L1 465 851 -5549 1349 214 31 24 chr3 182133821 182133946 -35903212 + AluJo SINE Alu 1 124 -188 243 0 0 0 chr3 182133946 182133973 -35903185 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1349 214 31 24 chr3 182133973 182134141 -35903017 + AluJo SINE Alu 124 296 -16 2382 229 127 27 chr3 182134141 182134646 -35902512 + L1MCb LINE L1 851 1495 -4905 436 213 139 0 chr3 182134643 182134781 -35902377 - L1MC/D LINE L1 -611 5748 5560 * 430 253 0 0 chr3 182137865 182137956 -35899202 + L1ME LINE L1 5522 5612 -552 2013 101 37 3 chr3 182138060 182138391 -35898767 - AluY SINE Alu 0 341 1 1018 69 23 0 chr3 182138391 182138522 -35898636 - AluY SINE Alu -177 134 1 2584 237 75 63 chr3 182138522 182139624 -35897534 + L1MC4a LINE L1 6690 7804 -4 394 264 0 0 chr3 182140344 182140450 -35896708 - L1MEc LINE L1 -4041 2355 2250 2061 109 29 47 chr3 182140977 182141338 -35895820 - MER51B LTR ERV1 0 377 63 459 195 73 85 chr3 182141336 182141500 -35895658 - MER51B LTR ERV1 -215 162 1 * 21 89 0 0 chr3 182143162 182143218 -35893940 + AT_rich Low_complexity Low_complexity 1 56 0 1672 188 53 3 chr3 182143431 182143751 -35893407 - MLT1A1 LTR MaLR -29 336 1 329 222 133 0 chr3 182145059 182145149 -35892009 - MER58 DNA MER1_type 0 2420 2319 264 282 118 0 chr3 182145169 182145254 -35891904 - MER58 DNA MER1_type -2325 95 1 224 212 15 45 chr3 182145254 182145320 -35891838 + MIR SINE MIR 89 152 -110 1035 199 47 25 chr3 182145524 182145760 -35891398 - AluJo SINE Alu -9 303 63 2219 137 37 0 chr3 182146370 182146721 -35890437 - THE1B LTR MaLR 0 364 1 569 240 55 7 chr3 182147719 182147865 -35889293 + LTR50 LTR ERVL 8 160 -635 448 231 223 13 chr3 182147871 182148111 -35889047 + LTR50 LTR ERVL 295 681 -114 679 253 80 14 chr3 182148321 182148551 -35888607 - MIR SINE MIR 0 262 17 628 233 33 0 chr3 182148685 182148835 -35888323 + L1MA10 LINE L1 6180 6334 0 21 0 0 0 chr3 182149067 182149088 -35888070 + AT_rich Low_complexity Low_complexity 1 21 0 1617 160 17 27 chr3 182149827 182150127 -35887031 + AluJo SINE Alu 4 300 -12 25 0 0 0 chr3 182150327 182150352 -35886806 + AT_rich Low_complexity Low_complexity 1 25 0 230 281 53 44 chr3 182151429 182151543 -35885615 + MIR SINE MIR 98 212 -50 557 291 74 27 chr3 182151575 182151896 -35885262 + MLT1J LTR MaLR 40 414 -97 6280 89 11 11 chr3 182151998 182153567 -35883591 + SVA Other Other 47 1384 -2 41 36 0 0 chr3 182153567 182153622 -35883536 + AT_rich Low_complexity Low_complexity 1 55 0 217 143 36 18 chr3 182153707 182153763 -35883395 + (TA)n Simple_repeat Simple_repeat 2 58 0 1923 142 46 27 chr3 182154756 182155122 -35882036 + THE1C LTR MaLR 3 375 0 265 221 0 26 chr3 182155429 182155506 -35881652 + L1ME LINE L1 795 869 -5201 747 295 59 70 chr3 182155612 182156256 -35880902 + L1ME LINE L1 881 1625 -4565 30 45 0 0 chr3 182157777 182157821 -35879337 + AT_rich Low_complexity Low_complexity 1 44 0 191 339 16 0 chr3 182158221 182158283 -35878875 - L2 LINE L2 -557 2757 2695 2166 80 40 3 chr3 182158310 182158610 -35878548 + AluY SINE Alu 1 311 0 368 308 92 50 chr3 182158959 182159199 -35877959 - L1ME4a LINE L1 -243 5878 5629 201 147 0 0 chr3 182159274 182159308 -35877850 + (TG)n Simple_repeat Simple_repeat 2 35 0 225 0 0 0 chr3 182159336 182159361 -35877797 + (CA)n Simple_repeat Simple_repeat 2 26 0 1548 168 120 0 chr3 182159371 182159662 -35877496 - MER2 DNA MER2_type 0 345 20 276 130 0 0 chr3 182159671 182159717 -35877441 + (TC)n Simple_repeat Simple_repeat 2 47 0 302 159 32 0 chr3 182159741 182159804 -35877354 + (CATATA)n Simple_repeat Simple_repeat 5 69 0 339 368 23 8 chr3 182160672 182160805 -35876353 + L2 LINE L2 3137 3271 -1 484 316 67 27 chr3 182161271 182161496 -35875662 - L2 LINE L2 -148 3165 2932 1537 196 65 16 chr3 182162727 182163099 -35874059 - MLT1B LTR MaLR 0 390 1 183 200 75 0 chr3 182163193 182163233 -35873925 + MIR3 SINE MIR 125 167 -41 22 70 0 0 chr3 182163659 182163702 -35873456 + AT_rich Low_complexity Low_complexity 1 43 0 399 233 0 0 chr3 182164371 182164444 -35872714 + tRNA-Ile-ATT tRNA tRNA 2 74 -3 270 0 0 0 chr3 182166459 182166489 -35870669 + (CA)n Simple_repeat Simple_repeat 2 31 0 331 380 7 7 chr3 182166903 182167045 -35870113 - MIR SINE MIR -87 175 34 345 58 39 0 chr3 182167612 182167664 -35869494 - Alu SINE Alu -7 294 241 23 33 0 0 chr3 182167673 182167703 -35869455 + AT_rich Low_complexity Low_complexity 1 30 0 6146 88 34 0 chr3 182168660 182169751 -35867407 - L1PA13 LINE L1 -11 6152 5042 2438 167 5 0 chr3 182169854 182170290 -35866868 - L1PA13 LINE L1 -1075 5071 4634 1408 213 31 3 chr3 182170389 182170680 -35866478 - AluSx SINE Alu -13 299 1 1379 190 60 4 chr3 182170868 182171137 -35866021 + AluJb SINE Alu 1 284 -18 306 0 0 0 chr3 182171137 182171171 -35865987 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 21 0 0 0 chr3 182171290 182171311 -35865847 + AT_rich Low_complexity Low_complexity 1 21 0 266 370 8 24 chr3 182172637 182172764 -35864394 - MIR SINE MIR -123 139 15 2904 72 5 0 chr3 182173323 182173962 -35863196 - L1PA7 LINE L1 -528 5626 4986 3952 57 8 2 chr3 182173962 182174468 -35862690 + L1PA7 LINE L1 5643 6153 -1 21 36 0 0 chr3 182174607 182174635 -35862523 + AT_rich Low_complexity Low_complexity 1 28 0 2460 128 3 8 chr3 182174828 182175194 -35861964 + THE1B LTR MaLR 1 364 0 192 331 55 16 chr3 182175843 182175973 -35861185 - MIR SINE MIR -69 139 7 10110 37 2 0 chr3 182175996 182177258 -35859900 - L1P LINE L1 -2017 4129 2866 9162 30 2 0 chr3 182177247 182178352 -35858806 + L1P LINE L1 4114 5220 -926 * 350 297 50 0 chr3 182178976 182179077 -35858081 - L2 LINE L2 -1 3312 3207 313 333 0 0 chr3 182180648 182180732 -35856426 + MIR SINE MIR 16 99 -109 233 151 41 82 chr3 182181468 182181541 -35855617 + L1MA4A LINE L1 6227 6296 -7 23 54 0 0 chr3 182181721 182181758 -35855400 + AT_rich Low_complexity Low_complexity 1 37 0 327 65 0 0 chr3 182181850 182181896 -35855262 + (TG)n Simple_repeat Simple_repeat 2 47 0 973 177 36 54 chr3 182181896 182182259 -35854899 - MLT1A2 LTR MaLR -50 342 6 23 0 0 0 chr3 182182335 182182358 -35854800 + AT_rich Low_complexity Low_complexity 1 23 0 3976 22 0 0 chr3 182182477 182182939 -35854219 - L1PA2 LINE L1 0 6155 5694 224 264 172 11 chr3 182183166 182183253 -35853905 + L2 LINE L2 3172 3272 0 195 129 0 0 chr3 182183669 182183700 -35853458 + (GGAA)n Simple_repeat Simple_repeat 2 32 0 3036 205 55 10 chr3 182184651 182185344 -35851814 + L1MC3 LINE L1 7060 7783 -2 1345 243 21 25 chr3 182186024 182186349 -35850809 - MLT1A2 LTR MaLR -48 326 3 372 278 188 21 chr3 182186402 182186546 -35850612 + MER5A DNA MER1_type 22 189 0 230 361 65 0 chr3 182187926 182188081 -35849077 + L1ME LINE L1 5691 5855 -266 754 301 80 23 chr3 182188293 182188645 -35848513 - LTR33 LTR ERVL -1 520 149 353 314 219 21 chr3 182189005 182189288 -35847870 + LTR33 LTR ERVL 156 494 -27 1268 220 32 72 chr3 182189494 182189899 -35847259 - MLT1B LTR MaLR 0 390 2 240 313 72 0 chr3 182190882 182190965 -35846193 + MER5A DNA MER1_type 10 98 -91 1141 204 98 84 chr3 182191089 182191598 -35845560 + LTR40a LTR ERVL 1 516 -3 2849 269 47 64 chr3 182191711 182192608 -35844550 + HERVL40 LTR ERVL 20 894 -4636 275 0 29 0 chr3 182192608 182192643 -35844515 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 2849 269 47 64 chr3 182192643 182192929 -35844229 + HERVL40 LTR ERVL 894 1183 -4347 28 0 0 0 chr3 182193115 182193143 -35844015 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr3 182193318 182193348 -35843810 + AT_rich Low_complexity Low_complexity 1 30 0 5003 118 17 13 chr3 182193408 182194182 -35842976 + L1PA13 LINE L1 5341 6117 -46 313 337 144 0 chr3 182195052 182195233 -35841925 - MIR SINE MIR -21 241 35 224 378 103 25 chr3 182197368 182197728 -35839430 + L2 LINE L2 2345 2732 -582 492 332 84 24 chr3 182198061 182198311 -35838847 - LTR16A LTR ERVL -161 289 25 962 230 0 10 chr3 182198773 182198969 -35838189 + AluJo SINE Alu 87 280 -32 34 0 0 0 chr3 182198970 182199004 -35838154 + AT_rich Low_complexity Low_complexity 1 34 0 27 49 0 0 chr3 182199094 182199135 -35838023 + AT_rich Low_complexity Low_complexity 1 41 0 306 372 17 17 chr3 182199707 182199938 -35837220 + L2 LINE L2 1752 1982 -1332 491 262 195 0 chr3 182201255 182201404 -35835754 + MER45A DNA AcHobo 1 178 0 2119 103 0 3 chr3 182202275 182202616 -35834542 + AluSc SINE Alu 1 340 0 25 0 0 0 chr3 182203493 182203518 -35833640 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr3 182203604 182203625 -35833533 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 182203687 182203710 -35833448 + AT_rich Low_complexity Low_complexity 1 23 0 3935 191 36 52 chr3 182203986 182204939 -35832219 - MER52A LTR ERV1 0 1755 819 240 114 0 0 chr3 182205063 182205107 -35832051 - MER52C LTR ERV1 -901 377 334 292 273 0 0 chr3 182205873 182205950 -35831208 - MIR SINE MIR -1 261 185 2047 186 19 57 chr3 182206116 182206818 -35830340 + L1MA8 LINE L1 5443 6092 -79 6844 35 11 1 chr3 182206918 182207754 -35829404 + L1PA3 LINE L1 5311 6154 -1 199 318 34 47 chr3 182208549 182208697 -35828461 + MIR SINE MIR 61 206 -56 204 294 11 100 chr3 182208864 182209044 -35828114 + L2 LINE L2 3141 3304 -9 270 266 149 56 chr3 182210122 182210660 -35826498 + HAL1 LINE L1 1729 2316 -191 757 157 59 39 chr3 182210709 182210862 -35826296 + AluJo SINE Alu 77 232 -80 6583 77 0 0 chr3 182210953 182212140 -35825018 - L1PA8 LINE L1 -8 6164 4962 189 74 0 0 chr3 182212330 182212357 -35824801 + (CAA)n Simple_repeat Simple_repeat 1 27 0 1463 121 69 98 chr3 182212459 182212806 -35824352 + MER1B DNA MER1_type 1 337 0 294 186 89 46 chr3 182213229 182213334 -35823824 - MIR SINE MIR -63 145 44 679 241 67 59 chr3 182214200 182214453 -35822705 - MIR SINE MIR -4 258 4 513 131 0 0 chr3 182215033 182215117 -35822041 + (TG)n Simple_repeat Simple_repeat 2 85 0 215 330 155 0 chr3 182215157 182215260 -35821898 - MIR SINE MIR -20 242 124 183 343 107 59 chr3 182216755 182216924 -35820234 - L2 LINE L2 0 3272 3096 25 31 0 0 chr3 182217237 182217269 -35819889 + AT_rich Low_complexity Low_complexity 1 32 0 818 290 94 58 chr3 182218990 182219184 -35817974 + MLT1L LTR MaLR 8 194 -421 2219 121 39 11 chr3 182219184 182219547 -35817611 - THE1C LTR MaLR -2 373 1 9859 128 35 5 chr3 182219547 182221082 -35816076 - THE1C-int LTR MaLR 0 1580 1 1961 145 41 14 chr3 182221082 182221447 -35815711 - THE1C LTR MaLR 0 375 1 818 290 94 58 chr3 182221447 182221837 -35815321 + MLT1L LTR MaLR 193 615 0 1675 192 61 20 chr3 182221885 182222281 -35814877 + MSTB1 LTR MaLR 21 432 0 637 244 17 50 chr3 182222661 182222841 -35814317 - MER45A DNA AcHobo -1 177 4 1807 159 54 0 chr3 182223108 182223404 -35813754 - AluSx SINE Alu 0 312 1 1137 189 53 98 chr3 182223516 182223912 -35813246 - MLT1B LTR MaLR -9 381 4 393 22 0 0 chr3 182226433 182226479 -35810679 + (CA)n Simple_repeat Simple_repeat 1 46 0 243 61 0 0 chr3 182226479 182226512 -35810646 + (GA)n Simple_repeat Simple_repeat 1 33 0 280 296 68 5 chr3 182227666 182227778 -35809380 + MIR SINE MIR 79 201 -7 207 0 0 0 chr3 182229402 182229425 -35807733 + (TA)n Simple_repeat Simple_repeat 1 23 0 32 57 0 0 chr3 182229484 182229537 -35807621 + AT_rich Low_complexity Low_complexity 1 53 0 25 31 0 0 chr3 182229571 182229603 -35807555 + AT_rich Low_complexity Low_complexity 1 32 0 234 261 57 0 chr3 182230487 182230575 -35806583 + L1MCa LINE L1 67 159 -6267 23262 193 32 34 chr3 182330576 182338318 -35698840 - HERVH LTR ERV1 -184 7529 1 3013 100 7 13 chr3 182338320 182338771 -35698387 - LTR7 LTR ERV1 -2 448 1 220 308 0 0 chr3 182338773 182338825 -35698333 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 251 303 90 32 chr3 182338971 182339126 -35698032 + MLT1J1 LTR MaLR 113 276 -170 522 294 69 44 chr3 182339476 182339796 -35697362 + MLT1J1 LTR MaLR 64 391 -55 207 88 0 0 chr3 182340146 182340180 -35696978 + (TC)n Simple_repeat Simple_repeat 1 34 0 288 0 0 0 chr3 182340180 182340212 -35696946 + (TG)n Simple_repeat Simple_repeat 1 32 0 186 344 112 8 chr3 182340588 182340711 -35696447 - MIR SINE MIR -118 144 9 257 229 0 0 chr3 182340711 182340759 -35696399 - MER5A DNA MER1_type 0 189 142 1449 100 9 9 chr3 182340759 182340969 -35696189 + AluSg/x SINE Alu 95 304 -8 729 193 7 7 chr3 182340971 182341106 -35696052 - MER5A DNA MER1_type -54 135 1 291 114 0 0 chr3 182341137 182341181 -35695977 + (TA)n Simple_repeat Simple_repeat 2 45 0 1565 221 0 10 chr3 182341296 182341590 -35695568 + AluJb SINE Alu 1 291 -21 183 250 105 40 chr3 182341644 182341720 -35695438 + L2 LINE L2 2766 2846 -468 1722 154 126 18 chr3 182342106 182342495 -35694663 - MER95 LTR ERV 0 431 1 3035 65 12 5 chr3 182342501 182342900 -35694258 + L1PA8 LINE L1 5767 6168 -4 376 332 70 13 chr3 182343100 182343329 -35693829 - MLT1J LTR MaLR -139 372 131 236 188 58 0 chr3 182343886 182343955 -35693203 + L1 LINE L1 4809 4881 -1265 * 5072 108 9 0 chr3 182343954 182344876 -35692282 + L1PA14 LINE L1 5056 5982 -179 286 83 17 67 chr3 182344875 182344935 -35692223 - L1P4 LINE L1 -640 5525 5469 * 1252 87 0 38 chr3 182344936 182345119 -35692039 + L1PA14 LINE L1 5984 6159 -2 904 258 117 20 chr3 182345561 182346072 -35691086 - L1MEc LINE L1 -4294 2102 1542 466 287 90 27 chr3 182346122 182346832 -35690326 - L1MEc LINE L1 -4961 1435 681 1428 207 135 17 chr3 182347932 182348400 -35688758 + Charlie1b DNA MER1_type 1 523 0 273 196 0 0 chr3 182348405 182348461 -35688697 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 1472 354 41 20 chr3 182350552 182351216 -35685942 + MER115 DNA AcHobo 1 678 -15 380 325 52 21 chr3 182352789 182352980 -35684178 - MLT1J LTR MaLR -314 197 1 2050 159 22 13 chr3 182353322 182353746 -35683412 + Tigger2 DNA MER2_type 1 2718 0 32 43 0 0 chr3 182354520 182354566 -35682592 + AT_rich Low_complexity Low_complexity 1 46 0 827 156 14 14 chr3 182354583 182354724 -35682434 - AluJb SINE Alu -171 141 1 1974 109 28 0 chr3 182355089 182355373 -35681785 - AluSq SINE Alu -21 292 1 630 356 121 33 chr3 182355523 182356410 -35680748 + L2 LINE L2 1773 2737 -577 840 181 104 84 chr3 182356528 182356777 -35680381 + LOR1a LTR ERV1 238 491 -6 1505 274 103 54 chr3 182356825 182357230 -35679928 - L1MCc LINE L1 -3591 3350 2967 22 0 0 0 chr3 182357230 182357252 -35679906 + AT_rich Low_complexity Low_complexity 1 22 0 1505 274 103 54 chr3 182357252 182358659 -35678499 - L1MCc LINE L1 -3974 2967 1275 208 349 147 0 chr3 182359638 182359747 -35677411 + L2 LINE L2 2933 3057 -215 218 341 149 44 chr3 182359918 182360420 -35676738 - L2 LINE L2 -612 2702 2148 225 65 0 0 chr3 182360433 182360464 -35676694 - L1M1 LINE L1 -497 5803 5773 363 258 21 0 chr3 182361739 182361820 -35675338 + L1MC4 LINE L1 6614 6699 -1343 1856 160 0 3 chr3 182361820 182362107 -35675051 - AluSx SINE Alu -26 286 1 363 258 21 0 chr3 182362107 182362118 -35675040 + L1MC4 LINE L1 6699 6708 -1334 5801 127 37 21 chr3 182362123 182363231 -35673927 - L1MA6 LINE L1 -4 6296 5174 401 326 110 4 chr3 182363297 182363524 -35673634 + MIR SINE MIR 12 262 0 1946 91 0 36 chr3 182364286 182364560 -35672598 - AluSg SINE Alu -10 300 37 210 91 0 0 chr3 182364939 182364972 -35672186 + (CA)n Simple_repeat Simple_repeat 2 34 0 683 301 93 13 chr3 182365043 182365269 -35671889 - MIR SINE MIR -1 261 18 235 294 43 22 chr3 182369039 182369131 -35668027 - MIR SINE MIR -51 211 118 1100 179 60 0 chr3 182369770 182369934 -35667224 - AluJo SINE Alu -14 298 118 398 20 20 0 chr3 182369934 182369985 -35667173 + (TTTTA)n Simple_repeat Simple_repeat 2 53 0 1100 179 60 0 chr3 182369985 182370021 -35667137 - AluJo SINE Alu -194 118 86 864 276 8 35 chr3 182371130 182371387 -35665771 - MIR SINE MIR 0 262 13 25 0 0 0 chr3 182372466 182372491 -35664667 + AT_rich Low_complexity Low_complexity 1 25 0 192 169 34 17 chr3 182372574 182372633 -35664525 + GA-rich Low_complexity Low_complexity 2 61 0 7743 119 3 2 chr3 182373236 182375274 -35661884 + L1PA8 LINE L1 4138 6172 0 248 293 13 0 chr3 182375406 182375481 -35661677 + Charlie8 DNA MER1_type 2341 2416 -1 221 395 22 37 chr3 182375998 182376132 -35661026 + L2 LINE L2 3141 3272 0 504 0 0 0 chr3 182376634 182376690 -35660468 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 1547 174 39 7 chr3 182378397 182378554 -35658604 - AluJb SINE Alu -17 295 124 180 0 0 0 chr3 182378554 182378574 -35658584 + (CA)n Simple_repeat Simple_repeat 1 20 0 1547 174 39 7 chr3 182378574 182378698 -35658460 - AluJb SINE Alu -188 124 5 6330 94 4 0 chr3 182378845 182379896 -35657262 - L1PA10 LINE L1 -2 6481 5439 4923 37 7 0 chr3 182379896 182380487 -35656671 + L1PA4 LINE L1 5554 6150 -5 19330 186 17 25 chr3 182380495 182381924 -35655234 - L1PA10 LINE L1 -1540 4921 3481 378 0 0 0 chr3 182381924 182381966 -35655192 + (TG)n Simple_repeat Simple_repeat 2 43 0 19330 186 17 25 chr3 182381966 182385059 -35652099 - L1PA10 LINE L1 -2980 3481 236 22 56 0 0 chr3 182385532 182385568 -35651590 + AT_rich Low_complexity Low_complexity 1 36 0 1313 97 0 0 chr3 182386327 182386492 -35650666 - AluSg SINE Alu -145 165 1 263 290 164 41 chr3 182386492 182387047 -35650111 - L1ME4a LINE L1 -16 6105 5483 280 311 112 24 chr3 182387193 182387399 -35649759 - L3 LINE CR1 -78 1499 1276 830 285 30 4 chr3 182388054 182388289 -35648869 - MIR SINE MIR -1 261 21 196 302 0 19 chr3 182388363 182388416 -35648742 - L2 LINE L2 -11 3302 3251 2351 212 83 42 chr3 182389610 182390281 -35646877 + L1MC3 LINE L1 7078 7776 -9 207 0 0 0 chr3 182391315 182391338 -35645820 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr3 182391556 182391577 -35645581 + AT_rich Low_complexity Low_complexity 1 21 0 288 243 15 0 chr3 182391661 182391744 -35645414 - MIR SINE MIR -62 146 63 1739 165 171 11 chr3 182391759 182392128 -35645030 - MSTA LTR MaLR 0 428 1 8778 170 50 12 chr3 182392128 182392745 -35644413 - MSTA-int LTR MaLR 0 1651 1059 6081 56 22 0 chr3 182392745 182393508 -35643650 + LTR17 LTR ERV1 1 780 0 8778 170 50 12 chr3 182393508 182394480 -35642678 - MSTA-int LTR MaLR -592 1059 1 2192 194 29 5 chr3 182394480 182394898 -35642260 - MSTA LTR MaLR 0 428 1 334 263 21 11 chr3 182395335 182395430 -35641728 + MIR SINE MIR 157 252 -10 344 307 105 33 chr3 182395459 182395612 -35641546 + MIR SINE MIR 22 185 -77 703 236 16 26 chr3 182395634 182395825 -35641333 + MER5A DNA MER1_type 1 189 0 21 0 0 0 chr3 182397391 182397412 -35639746 + AT_rich Low_complexity Low_complexity 1 21 0 243 254 32 16 chr3 182397581 182397644 -35639514 - L3b LINE CR1 -241 1342 1279 2977 162 86 70 chr3 182397849 182398590 -35638568 + LTR48 LTR ERV1 5 757 -30 1576 127 53 4 chr3 182398701 182398945 -35638213 + AluSc SINE Alu 1 256 -53 200 183 0 83 chr3 182399463 182399523 -35637635 + CT-rich Low_complexity Low_complexity 2 56 0 317 361 76 59 chr3 182400131 182400614 -35636544 - L2 LINE L2 -50 3222 2731 508 285 51 85 chr3 182400715 182401931 -35635227 - L1MCc LINE L1 -4604 2518 1129 192 392 39 0 chr3 182402436 182402538 -35634620 - L2 LINE L2 -568 2746 2641 394 305 155 15 chr3 182402567 182402767 -35634391 + MIR SINE MIR 34 261 -1 532 252 51 113 chr3 182403164 182403728 -35633430 - LTR41 LTR ERVL -76 697 169 26 0 0 27 chr3 182403971 182403990 -35633168 + AT_rich Low_complexity Low_complexity 1 20 -16 4304 69 7 0 chr3 182403990 182404555 -35632603 - L1PA8 LINE L1 -2 6170 5602 26 0 0 27 chr3 182404555 182404572 -35632586 + AT_rich Low_complexity Low_complexity 20 36 0 703 265 66 63 chr3 182404705 182404911 -35632247 - MLT2C1 LTR ERVL 0 397 188 1371 59 0 0 chr3 182404911 182405081 -35632077 - L1PA5 LINE L1 -9 6145 5976 703 265 66 63 chr3 182405081 182405270 -35631888 - MLT2C1 LTR ERVL -209 188 1 545 188 72 7 chr3 182405691 182405829 -35631329 + MER69 DNA AcHobo 2380 2526 0 1125 274 75 36 chr3 182406491 182406667 -35630491 - HAL1b LINE L1 -525 823 655 2404 62 0 33 chr3 182406667 182406973 -35630185 - AluY SINE Alu -15 296 1 1125 274 75 36 chr3 182406973 182407426 -35629732 - HAL1b LINE L1 -693 655 161 2562 110 3 3 chr3 182407426 182407781 -35629377 + THE1A LTR MaLR 1 355 0 1125 274 75 36 chr3 182407781 182407852 -35629306 - HAL1b LINE L1 -1187 161 94 24 32 0 0 chr3 182407859 182407890 -35629268 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr3 182408070 182408095 -35629063 + AT_rich Low_complexity Low_complexity 1 25 0 2075 109 0 55 chr3 182409082 182409412 -35627746 - AluSx SINE Alu 0 312 1 240 287 107 33 chr3 182409658 182409808 -35627350 + L2 LINE L2 3152 3312 -1 23 0 0 0 chr3 182410556 182410579 -35626579 + AT_rich Low_complexity Low_complexity 1 23 0 282 270 14 27 chr3 182411527 182411601 -35625557 - MIR3 SINE MIR -131 77 5 209 191 0 0 chr3 182411842 182411884 -35625274 + (TG)n Simple_repeat Simple_repeat 2 43 0 247 279 8 47 chr3 182411891 182412020 -35625138 + L1MC4 LINE L1 7793 7916 -126 350 258 26 0 chr3 182412112 182412231 -35624927 + L1MC4 LINE L1 7883 7994 -1 355 330 62 0 chr3 182412259 182412371 -35624787 + L3 LINE CR1 1443 1561 -16 3349 152 16 3 chr3 182414032 182414610 -35622548 + L1PA16 LINE L1 5576 6160 -6 193 322 47 60 chr3 182414658 182414807 -35622351 + L2 LINE L2 2907 3053 -219 225 132 0 0 chr3 182415141 182415179 -35621979 + (TGAG)n Simple_repeat Simple_repeat 3 40 0 2267 117 13 58 chr3 182415184 182415561 -35621597 - MSTC LTR MaLR -68 360 1 26 0 0 0 chr3 182416928 182416954 -35620204 + AT_rich Low_complexity Low_complexity 1 26 0 216 0 0 0 chr3 182417151 182417175 -35619983 + (T)n Simple_repeat Simple_repeat 1 24 0 259 316 0 26 chr3 182419449 182419525 -35617633 + MER5A DNA MER1_type 62 135 -54 715 278 19 5 chr3 182420376 182420585 -35616573 + MIR SINE MIR 48 259 -3 474 341 40 0 chr3 182420595 182420771 -35616387 - MIR SINE MIR -62 200 18 25 65 0 0 chr3 182420931 182420977 -35616181 + AT_rich Low_complexity Low_complexity 1 46 0 405 141 0 0 chr3 182421526 182421590 -35615568 - MER92C LTR ERV1 0 554 491 586 288 31 35 chr3 182421612 182421838 -35615320 - MER92C LTR ERV1 -329 225 1 489 221 150 28 chr3 182422248 182422461 -35614697 - LTR37A LTR ERV1 -181 245 7 594 212 159 0 chr3 182423073 182423224 -35613934 + MER5A DNA MER1_type 9 183 -6 879 289 132 35 chr3 182423866 182424415 -35612743 - L2 LINE L2 -2 3311 2707 23 54 0 0 chr3 182424565 182424602 -35612556 + AT_rich Low_complexity Low_complexity 1 37 0 4344 140 10 9 chr3 182424602 182424929 -35612229 - L1PA16 LINE L1 -9 6157 5832 240 59 0 0 chr3 182424929 182424963 -35612195 + (TG)n Simple_repeat Simple_repeat 2 35 0 4344 140 10 9 chr3 182424963 182426108 -35611050 - L1PA16 LINE L1 -334 5832 4608 4351 228 26 9 chr3 182426127 182427497 -35609661 - L1PA15-16 LINE L1 -3417 3432 2026 3729 98 30 0 chr3 182428125 182428663 -35608495 + MER41A LTR ERV1 1 554 0 668 90 0 20 chr3 182428958 182429058 -35608100 + MER4A LTR ERV1 1 98 -566 1727 136 38 22 chr3 182429059 182429397 -35607761 + MER4A LTR ERV1 262 663 -1 1455 109 31 27 chr3 182429401 182429657 -35607501 + L1P4 LINE L1 5268 5524 -642 230 343 78 0 chr3 182430299 182430401 -35606757 + MIR SINE MIR 34 143 -65 377 255 21 12 chr3 182430825 182430937 -35606221 - MLT1J LTR MaLR -284 173 52 640 280 26 10 chr3 182431084 182431277 -35605881 + L2 LINE L2 2187 2382 -932 364 326 17 29 chr3 182431318 182431493 -35605665 + MLT1J LTR MaLR 26 198 -313 1918 213 39 60 chr3 182431518 182432054 -35605104 + L1ME1 LINE L1 5511 6035 -131 276 185 34 101 chr3 182432221 182432340 -35604818 + L1ME1 LINE L1 6051 6161 -5 12582 98 17 0 chr3 182432415 182435102 -35602056 + L1PA8 LINE L1 3485 6170 -2 584 304 45 42 chr3 182435223 182435509 -35601649 + MLT1J LTR MaLR 217 503 -8 379 330 153 30 chr3 182435548 182436148 -35601010 + L2 LINE L2 2601 3313 0 324 374 70 26 chr3 182436663 182436890 -35600268 + L2 LINE L2 3036 3272 0 33 56 0 0 chr3 182438263 182438317 -35598841 + AT_rich Low_complexity Low_complexity 1 54 0 736 117 23 31 chr3 182438629 182438757 -35598401 - L1PA16 LINE L1 0 6166 6040 377 242 118 12 chr3 182440019 182440180 -35596978 - L1ME4a LINE L1 -237 5884 5707 1761 129 100 0 chr3 182440422 182440701 -35596457 + AluSx SINE Alu 6 312 0 406 313 70 0 chr3 182441274 182441402 -35595756 - MIR SINE MIR -34 228 92 469 234 8 144 chr3 182441665 182441866 -35595292 + MIR3 SINE MIR 25 207 -1 339 307 58 22 chr3 182442742 182442879 -35594279 + MER91A DNA MER1_type 42 183 -13 22 0 0 0 chr3 182444334 182444356 -35592802 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr3 182444437 182444471 -35592687 + AT_rich Low_complexity Low_complexity 1 34 0 22 35 0 0 chr3 182444603 182444632 -35592526 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr3 182446423 182446467 -35590691 + AT_rich Low_complexity Low_complexity 1 44 0 2010 138 3 3 chr3 182446994 182447298 -35589860 + AluSx SINE Alu 1 304 -8 185 196 39 20 chr3 182447985 182448036 -35589122 - L2 LINE L2 0 3313 3262 22 80 0 0 chr3 182448072 182448122 -35589036 + AT_rich Low_complexity Low_complexity 1 50 0 286 349 9 0 chr3 182448174 182448280 -35588878 + MIR SINE MIR 48 154 -108 1717 159 32 78 chr3 182448643 182449052 -35588106 + MLT1B LTR MaLR 1 390 0 1473 155 10 31 chr3 182449399 182449690 -35587468 + AluJo SINE Alu 12 296 -16 284 305 114 6 chr3 182450292 182450459 -35586699 + L2 LINE L2 3124 3308 -5 1197 221 156 27 chr3 182451134 182451545 -35585613 - MLT1C LTR MaLR -3 464 1 2614 30 0 0 chr3 182451931 182452236 -35584922 + AluYa5 SINE Alu 1 305 -6 273 267 0 35 chr3 182452997 182453083 -35584075 + CT-rich Low_complexity Low_complexity 1 83 0 568 170 38 19 chr3 182453343 182453449 -35583709 + Tigger3(Golem) DNA MER2_type 1 108 -2921 3340 149 116 7 chr3 182453449 182454121 -35583037 + Tigger3(Golem) DNA MER2_type 2284 3028 -1 364 270 70 0 chr3 182455349 182455449 -35581709 + L2 LINE L2 3158 3264 -8 843 220 65 116 chr3 182456089 182456579 -35580579 - LTR37B LTR ERV1 0 468 4 378 296 276 10 chr3 182457204 182457501 -35579657 + L2 LINE L2 2938 3313 0 476 270 84 49 chr3 182457721 182457947 -35579211 - MIR SINE MIR -14 248 15 360 0 0 0 chr3 182458297 182458337 -35578821 + (TG)n Simple_repeat Simple_repeat 1 40 0 317 373 30 15 chr3 182458482 182458616 -35578542 + MIR SINE MIR 8 143 -119 307 329 143 39 chr3 182458903 182459189 -35577969 - L1M2 LINE L1 -5528 1321 1006 410 323 48 16 chr3 182459815 182460004 -35577154 + L2 LINE L2 3112 3306 -7 22 70 0 0 chr3 182460796 182460839 -35576319 + AT_rich Low_complexity Low_complexity 1 43 0 2357 124 30 16 chr3 182461012 182461382 -35575776 - THE1C LTR MaLR 0 375 1 45 0 0 0 chr3 182461494 182461539 -35575619 + AT_rich Low_complexity Low_complexity 1 45 0 547 298 59 48 chr3 182463361 182463591 -35573567 - MARNA DNA Mariner -155 431 194 2284 116 0 0 chr3 182463591 182463893 -35573265 - AluSx SINE Alu -10 302 1 547 298 59 48 chr3 182463893 182464034 -35573124 - MARNA DNA Mariner -392 194 56 228 400 0 8 chr3 182464495 182464620 -35572538 + L2 LINE L2 3138 3261 -11 336 206 44 0 chr3 182465266 182465334 -35571824 + Tigger2 DNA MER2_type 1 71 -2647 * 2058 165 91 7 chr3 182465331 182465738 -35571420 + Tigger2 DNA MER2_type 2278 2718 0 1103 166 0 54 chr3 182465826 182466049 -35571109 + MER2 DNA MER2_type 1 211 -134 1889 149 10 0 chr3 182466981 182467270 -35569888 - AluSx SINE Alu -20 292 1 228 305 76 9 chr3 182467579 182467684 -35569474 - L2 LINE L2 -3 3310 3199 189 286 0 107 chr3 182468586 182468698 -35568460 - L2 LINE L2 -516 2798 2699 704 319 77 59 chr3 182468807 182469570 -35567588 + L2 LINE L2 2401 3165 -107 303 307 79 31 chr3 182470638 182470765 -35566393 - MIR3 SINE MIR -45 163 31 2368 68 0 37 chr3 182470942 182471265 -35565893 + AluY SINE Alu 1 311 0 227 413 41 0 chr3 182471758 182471879 -35565279 + L2 LINE L2 3136 3261 -11 416 268 104 24 chr3 182472475 182472623 -35564535 + MIR SINE MIR 58 214 -48 295 280 113 24 chr3 182472684 182472852 -35564306 - MIR SINE MIR -27 235 53 351 0 0 0 chr3 182473314 182473353 -35563805 + (CA)n Simple_repeat Simple_repeat 2 40 0 2174 142 83 8 chr3 182473500 182473873 -35563285 + MSTA LTR MaLR 1 401 -27 291 54 0 0 chr3 182473873 182473910 -35563248 + (TTTTC)n Simple_repeat Simple_repeat 3 39 0 249 135 0 0 chr3 182473917 182473954 -35563204 + MSTA LTR MaLR 392 428 0 280 338 130 19 chr3 182474479 182474686 -35562472 + MIR SINE MIR 12 241 -21 316 289 21 21 chr3 182475671 182475768 -35561390 - MIR3 SINE MIR -6 202 106 202 269 39 13 chr3 182477248 182477326 -35559832 + MIR SINE MIR 96 175 -87 342 333 123 0 chr3 182478218 182478380 -35558778 + MIR SINE MIR 53 234 -28 243 178 0 0 chr3 182478960 182479005 -35558153 - L2 LINE L2 -13 3300 3256 2030 124 7 0 chr3 182479712 182480022 -35557136 + AluSx SINE Alu 2 313 0 622 215 0 107 chr3 182480613 182480684 -35556474 + MER5B DNA MER1_type 1 78 -100 2438 43 0 0 chr3 182480684 182480993 -35556165 + AluY SINE Alu 3 311 0 622 215 0 107 chr3 182480993 182481097 -35556061 + MER5B DNA MER1_type 78 158 -20 542 240 180 7 chr3 182481146 182481296 -35555862 + MER5A DNA MER1_type 13 188 -1 22 56 0 0 chr3 182481509 182481545 -35555613 + AT_rich Low_complexity Low_complexity 1 36 0 471 348 49 6 chr3 182481769 182481933 -35555225 - MIR3 SINE MIR -22 186 16 217 329 12 24 chr3 182483378 182483463 -35553695 - MIR SINE MIR -121 141 58 191 299 107 48 chr3 182483491 182483678 -35553480 - L2 LINE L2 -743 2571 2374 201 298 0 53 chr3 182483867 182483924 -35553234 + L2 LINE L2 3186 3239 -33 438 294 124 6 chr3 182483960 182484137 -35553021 + MIR SINE MIR 49 246 -16 201 227 0 76 chr3 182484096 182484162 -35552996 + L2 LINE L2 3251 3311 -2 * 21 36 0 0 chr3 182484493 182484521 -35552637 + AT_rich Low_complexity Low_complexity 1 28 0 2419 64 0 0 chr3 182485909 182486229 -35550929 + AluY SINE Alu 1 311 0 269 331 111 28 chr3 182488139 182488320 -35548838 - MIR SINE MIR -19 243 48 220 303 50 50 chr3 182488439 182488538 -35548620 - MIR SINE MIR -161 101 3 2422 185 37 51 chr3 182488543 182488620 -35548538 - MER34B LTR ERV1 0 565 488 1766 188 0 0 chr3 182488620 182488913 -35548245 + AluJo SINE Alu 1 293 -19 2422 185 37 51 chr3 182488913 182489407 -35547751 - MER34B LTR ERV1 -77 488 2 772 267 25 25 chr3 182489799 182490039 -35547119 - L2 LINE L2 0 3313 3074 3903 159 50 36 chr3 182490689 182491461 -35545697 - LTR39 LTR ERV1 0 783 1 308 241 9 74 chr3 182491968 182492076 -35545082 + MIR3 SINE MIR 85 185 -23 2470 97 119 5 chr3 182492185 182492587 -35544571 - LTR7 LTR ERV1 -2 448 1 2322 106 48 13 chr3 182492587 182492966 -35544192 - HERVH LTR ERV1 0 7713 7322 1357 139 19 0 chr3 182492964 182493180 -35543978 - HERVH LTR ERV1 -1894 5819 5600 * 4493 137 0 1 chr3 182493181 182493844 -35543314 - HERVH LTR ERV1 -2564 5149 4488 6155 86 3 2 chr3 182493846 182494699 -35542459 - HERVH LTR ERV1 -3720 3993 3140 * 16756 94 18 23 chr3 182494678 182497627 -35539531 - HERVH LTR ERV1 -4718 2995 1 2437 82 130 10 chr3 182497638 182498030 -35539128 - LTR7 LTR ERV1 -11 439 1 2400 105 131 3 chr3 182498140 182498530 -35538628 - LTR7 LTR ERV1 -7 443 4 2283 103 10 31 chr3 182498532 182498919 -35538239 - HERVH LTR ERV1 0 7713 7335 21 0 0 0 chr3 182499215 182499236 -35537922 + AT_rich Low_complexity Low_complexity 1 21 0 333 68 0 0 chr3 182499899 182499943 -35537215 + (TA)n Simple_repeat Simple_repeat 1 44 0 405 307 87 14 chr3 182500432 182500719 -35536439 - L1ME LINE L1 -302 5819 5512 215 313 16 0 chr3 182501190 182501254 -35535904 - MIR SINE MIR -147 115 51 214 195 0 0 chr3 182602963 182603004 -35434154 + (TATAA)n Simple_repeat Simple_repeat 5 45 0 30 27 0 0 chr3 182603719 182603756 -35433402 + AT_rich Low_complexity Low_complexity 1 37 0 1367 223 19 48 chr3 182605564 182605940 -35431218 + MLT1A1 LTR MaLR 1 365 0 28 48 0 0 chr3 182606687 182606729 -35430429 + AT_rich Low_complexity Low_complexity 1 42 0 9277 128 11 1 chr3 182606810 182607308 -35429850 - L1PA8 LINE L1 -2 6170 5679 2002 128 3 33 chr3 182607308 182607614 -35429544 - AluSp SINE Alu -11 302 6 9277 128 11 1 chr3 182607614 182609381 -35427777 - L1PA8 LINE L1 -493 5679 3913 207 234 122 75 chr3 182609827 182609934 -35427224 - L2 LINE L2 -16 3256 3145 252 355 107 0 chr3 182610007 182610128 -35427030 - L2 LINE L2 -468 2846 2713 25 51 0 0 chr3 182610323 182610362 -35426796 + AT_rich Low_complexity Low_complexity 1 39 0 2076 149 35 73 chr3 182610456 182610907 -35426251 - Tigger2a DNA MER2_type 0 434 1 28 48 0 0 chr3 182611144 182611186 -35425972 + AT_rich Low_complexity Low_complexity 1 42 0 210 259 17 0 chr3 182612614 182612672 -35424486 + GA-rich Low_complexity Low_complexity 2 60 0 2002 122 10 19 chr3 182613941 182614253 -35422905 + AluSp SINE Alu 1 309 -4 1336 219 109 3 chr3 182614326 182614637 -35422521 - MER2 DNA MER2_type 0 344 1 2195 109 0 0 chr3 182616317 182616638 -35420520 - AluSx SINE Alu 0 321 1 2212 168 57 7 chr3 182617998 182618402 -35418756 - MSTA LTR MaLR -2 426 3 214 265 0 0 chr3 182618783 182618832 -35418326 + (CATA)n Simple_repeat Simple_repeat 2 50 0 496 234 80 84 chr3 182619205 182619444 -35417714 - MER52A LTR ERV1 -1517 238 1 1717 198 81 28 chr3 182619445 182619839 -35417319 - HUERS-P2 LTR ERV1 -2 3086 2672 1388 178 0 4 chr3 182619854 182620090 -35417068 - MER52A-int LTR ERV1 -1299 3918 3684 * 8744 138 52 48 chr3 182620087 182620612 -35416546 - MER52A-int LTR ERV1 -2212 4784 4263 2371 73 10 3 chr3 182620612 182620915 -35416243 - AluY SINE Alu -6 305 1 8744 138 52 48 chr3 182620915 182621798 -35415360 - MER52A-int LTR ERV1 -2733 4263 3385 2196 89 0 65 chr3 182621798 182622122 -35415036 - AluY SINE Alu -8 303 1 8744 138 52 48 chr3 182622122 182622850 -35414308 - MER52A-int LTR ERV1 -3611 3385 2661 1968 150 10 0 chr3 182622850 182623143 -35414015 - AluSg1 SINE Alu -13 296 1 8744 138 52 48 chr3 182623143 182623270 -35413888 - MER52A-int LTR ERV1 -4335 2661 1850 314 89 0 22 chr3 182623268 182623313 -35413845 - MER52A-int LTR ERV1 -925 3955 3912 * 5879 152 65 78 chr3 182623319 182624546 -35412612 - MER52A-int LTR ERV1 -487 4730 3489 2150 121 0 9 chr3 182624546 182624861 -35412297 - AluSx SINE Alu 0 312 1 5879 152 65 78 chr3 182624861 182624978 -35412180 - MER52A-int LTR ERV1 -1728 3489 411 227 186 0 17 chr3 182624978 182625037 -35412121 + GA-rich Low_complexity Low_complexity 3 60 0 2638 164 4 29 chr3 182625038 182625490 -35411668 - MER52A-int LTR ERV1 -6650 441 1 8028 195 107 9 chr3 182625490 182627086 -35410072 - MER52A LTR ERV1 0 1755 4 280 328 80 80 chr3 182627520 182627834 -35409324 - L2 LINE L2 -90 3182 2869 329 343 65 36 chr3 182627960 182628269 -35408889 - L2 LINE L2 -656 2658 2341 382 311 68 5 chr3 182628706 182628896 -35408262 + MIR SINE MIR 61 262 0 202 255 0 0 chr3 182629507 182629558 -35407600 - MIR SINE MIR -59 203 153 762 222 36 40 chr3 182630592 182630817 -35406341 + MLT2B1 LTR ERVL 3 226 -188 831 301 33 18 chr3 182631491 182631767 -35405391 + MLT1I LTR MaLR 120 399 -10 648 264 238 7 chr3 182631817 182632094 -35405064 - MLT1I LTR MaLR -8 401 61 443 345 37 49 chr3 182632553 182632878 -35404280 + L1ME LINE L1 5040 5360 -786 292 270 84 44 chr3 182632920 182633146 -35404012 + L1ME LINE L1 5396 5630 -540 1654 290 39 31 chr3 182633627 182634213 -35402945 + MLT1E LTR MaLR 3 593 0 812 189 242 13 chr3 182634394 182634712 -35402446 - MER3 DNA MER1_type 0 2624 2234 41 36 0 0 chr3 182634713 182634768 -35402390 + AT_rich Low_complexity Low_complexity 1 55 0 483 160 90 0 chr3 182634776 182634876 -35402282 - MER3 DNA MER1_type -48 161 53 21 0 0 0 chr3 182634968 182634989 -35402169 + AT_rich Low_complexity Low_complexity 1 21 0 219 241 17 17 chr3 182635026 182635084 -35402074 + MER5B DNA MER1_type 2 59 -119 21 0 0 0 chr3 182636023 182636044 -35401114 + AT_rich Low_complexity Low_complexity 1 21 0 264 273 61 10 chr3 182636323 182636422 -35400736 + L1ME LINE L1 5596 5699 -422 873 156 7 0 chr3 182636778 182636913 -35400245 + AluSg SINE Alu 17 152 -158 1532 97 5 5 chr3 182636913 182637130 -35400028 - pTR5 LTR ERV1 -2050 388 172 362 188 62 31 chr3 182637133 182637229 -35399929 - LTR30 LTR ERV1 -80 642 544 4552 126 148 30 chr3 182637229 182638233 -35398925 - pTR5 LTR ERV1 -413 2025 743 1073 129 0 0 chr3 182638233 182638380 -35398778 + AluSg SINE Alu 147 293 -19 23 0 0 0 chr3 182639471 182639494 -35397664 + AT_rich Low_complexity Low_complexity 1 23 0 1507 233 37 23 chr3 182640016 182640450 -35396708 - L1M4 LINE L1 -1149 4997 4558 21 0 0 0 chr3 182640820 182640841 -35396317 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 182641013 182641034 -35396124 + AT_rich Low_complexity Low_complexity 1 21 0 12223 125 24 19 chr3 182641155 182643094 -35394064 + L1P LINE L1 11 1959 -4187 801 304 51 7 chr3 182643174 182643470 -35393688 - L1MEc LINE L1 -5965 431 123 190 165 0 59 chr3 182643473 182643558 -35393600 + (TATATG)n Simple_repeat Simple_repeat 1 80 0 * 228 135 0 0 chr3 182643538 182643575 -35393583 + (TG)n Simple_repeat Simple_repeat 2 38 0 22 0 0 0 chr3 182643711 182643733 -35393425 + AT_rich Low_complexity Low_complexity 1 22 0 629 212 34 0 chr3 182644734 182644880 -35392278 + L1ME1 LINE L1 4695 4845 -1301 1596 195 11 54 chr3 182644892 182645009 -35392149 - MLT1A1 LTR MaLR -12 353 232 2215 103 3 3 chr3 182645009 182645310 -35391848 + AluSc SINE Alu 1 301 -8 1596 195 11 54 chr3 182645310 182645561 -35391597 - MLT1A1 LTR MaLR -133 232 1 1269 277 14 18 chr3 182645561 182646060 -35391098 + L1ME1 LINE L1 4841 5337 -809 * 4490 172 44 13 chr3 182646056 182647110 -35390048 - L1PA16 LINE L1 -49 6117 5037 339 61 20 0 chr3 182647110 182647159 -35389999 + L1PA16 LINE L1 6108 6157 -9 221 225 0 0 chr3 182647310 182647350 -35389808 + (CA)n Simple_repeat Simple_repeat 2 41 0 267 259 0 0 chr3 182647355 182647440 -35389718 + (TA)n Simple_repeat Simple_repeat 1 85 0 2037 277 26 28 chr3 182647543 182648323 -35388835 + L1ME1 LINE L1 5335 6112 -54 2130 141 0 0 chr3 182648324 182648630 -35388528 + AluSx SINE Alu 1 306 -6 247 254 0 0 chr3 182648650 182648717 -35388441 + L1MA10 LINE L1 6256 6322 -12 21 0 0 0 chr3 182648723 182648744 -35388414 + AT_rich Low_complexity Low_complexity 1 21 0 2105 132 0 0 chr3 182648747 182649042 -35388116 + AluSx SINE Alu 1 295 -17 2421 70 0 3 chr3 182649943 182650255 -35386903 - AluY SINE Alu 0 311 1 5537 199 101 11 chr3 182651856 182653000 -35384158 + MER52A LTR ERV1 510 1755 0 497 318 76 33 chr3 182654450 182654661 -35382497 - L2 LINE L2 -1 3312 3093 1123 297 48 24 chr3 182654778 182655155 -35382003 + MLT1F1 LTR MaLR 95 480 -87 583 208 48 0 chr3 182655184 182655309 -35381849 + MLT1F1 LTR MaLR 435 565 -2 751 219 0 0 chr3 182655354 182655491 -35381667 - FRAM SINE Alu -13 163 27 233 300 71 0 chr3 182656664 182656734 -35380424 + MLT1I LTR MaLR 130 204 -205 383 184 0 26 chr3 182656739 182656815 -35380343 + MLT1I LTR MaLR 324 397 -12 23 33 0 0 chr3 182657304 182657334 -35379824 + AT_rich Low_complexity Low_complexity 1 30 0 191 295 42 53 chr3 182657398 182657493 -35379665 - L3b LINE CR1 -182 1401 1308 21 57 0 0 chr3 182657635 182657670 -35379488 + AT_rich Low_complexity Low_complexity 1 35 0 252 0 0 0 chr3 182657851 182657879 -35379279 + (TA)n Simple_repeat Simple_repeat 2 29 0 1456 191 70 0 chr3 182657879 182658194 -35378964 - MER2 DNA MER2_type -5 340 4 31 82 0 0 chr3 182658356 182658429 -35378729 + AT_rich Low_complexity Low_complexity 1 73 0 324 320 0 0 chr3 182658812 182658937 -35378221 - MER103 DNA DNA -3 163 39 617 204 183 38 chr3 182659074 182659260 -35377898 - MER20 DNA MER1_type -6 213 1 5928 56 9 3 chr3 182659527 182660274 -35376884 - L1PA5 LINE L1 -2 6152 5401 1402 46 10 0 chr3 182660271 182660465 -35376693 + L1P LINE L1 5030 5225 -921 * 192 325 56 16 chr3 182660533 182660659 -35376499 + L2 LINE L2 2140 2270 -1044 482 304 62 31 chr3 182661020 182661214 -35375944 - L2 LINE L2 -1 3312 3113 352 237 23 119 chr3 182661395 182661572 -35375586 + MIR SINE MIR 84 243 -19 198 143 0 0 chr3 182661577 182661612 -35375546 + (TATG)n Simple_repeat Simple_repeat 2 36 0 190 224 24 0 chr3 182661639 182661724 -35375434 + (TA)n Simple_repeat Simple_repeat 2 88 0 254 262 155 0 chr3 182662538 182662622 -35374536 - MIR3 SINE MIR -6 202 106 255 246 53 0 chr3 182662947 182663004 -35374154 + L3 LINE CR1 1149 1208 -369 2206 87 30 0 chr3 182663556 182663854 -35373304 - AluSq SINE Alu -6 307 1 487 320 47 0 chr3 182664036 182664186 -35372972 + L2 LINE L2 3116 3272 0 2322 70 3 3 chr3 182664247 182664549 -35372609 - AluY SINE Alu -9 302 1 21 0 0 0 chr3 182664789 182664810 -35372348 + AT_rich Low_complexity Low_complexity 1 21 0 431 310 70 0 chr3 182665118 182665289 -35371869 - MIR SINE MIR -3 259 77 188 325 91 0 chr3 182665659 182665736 -35371422 + MIR SINE MIR 56 139 -123 584 262 134 70 chr3 182667051 182667647 -35369511 - LTR48B LTR ERV1 0 644 4 1815 147 69 20 chr3 182669463 182669810 -35367348 + THE1B LTR MaLR 1 364 0 10955 113 6 3 chr3 182669810 182671384 -35365774 + THE1B-int LTR MaLR 1 1578 -2 2004 114 56 67 chr3 182671394 182671538 -35365620 + THE1B LTR MaLR 9 153 -211 2025 112 0 21 chr3 182671538 182671868 -35365290 - AluSx SINE Alu 0 326 3 2004 114 56 67 chr3 182671868 182672082 -35365076 + THE1B LTR MaLR 153 364 0 904 221 80 80 chr3 182672186 182672737 -35364421 + Charlie2 DNA MER1_type 2306 2856 -6 356 82 0 0 chr3 182673366 182673415 -35363743 + L1MA1 LINE L1 5423 5471 -833 345 140 0 0 chr3 182673413 182673470 -35363688 - L1M1 LINE L1 -770 5532 5476 * 2081 102 31 0 chr3 182673473 182673795 -35363363 + L1MA1 LINE L1 5971 6302 0 196 313 15 15 chr3 182673880 182673947 -35363211 - MIR SINE MIR -13 249 183 286 317 0 58 chr3 182674293 182674413 -35362745 + MIR SINE MIR 150 262 0 22 56 0 0 chr3 182674587 182674623 -35362535 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr3 182675519 182675547 -35361611 + AT_rich Low_complexity Low_complexity 1 28 0 201 291 0 0 chr3 182675854 182675909 -35361249 + GA-rich Low_complexity Low_complexity 2 56 0 2179 110 0 0 chr3 182676010 182676301 -35360857 - AluSx SINE Alu -21 291 1 21 36 0 0 chr3 182676419 182676447 -35360711 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr3 182676639 182676684 -35360474 + AT_rich Low_complexity Low_complexity 1 45 0 2789 288 59 71 chr3 182676705 182678413 -35358745 + HAL1 LINE L1 3 1689 -818 244 294 137 56 chr3 182678618 182678924 -35358234 + HAL1b LINE L1 164 494 -854 233 282 108 62 chr3 182679208 182679331 -35357827 - MLT1J LTR MaLR -210 301 164 1900 148 0 16 chr3 182679331 182679634 -35357524 + AluJo SINE Alu 1 298 -14 233 282 108 62 chr3 182679634 182679705 -35357453 - MLT1J LTR MaLR -347 164 98 24 77 0 0 chr3 182680210 182680262 -35356896 + AT_rich Low_complexity Low_complexity 1 52 0 582 234 71 54 chr3 182680992 182681231 -35355927 + LTR1B LTR ERV1 584 826 0 180 246 18 70 chr3 182682194 182682251 -35354907 + MIR3 SINE MIR 106 159 -49 24 32 0 0 chr3 182682397 182682428 -35354730 + AT_rich Low_complexity Low_complexity 1 31 0 856 300 126 79 chr3 182683904 182684631 -35352527 + L2 LINE L2 2323 3082 -231 322 294 47 38 chr3 182685809 182686020 -35351138 - L1MC4a LINE L1 -1878 5930 5718 308 275 75 81 chr3 182686233 182686553 -35350605 - L1M2 LINE L1 -4844 2005 1688 189 121 0 0 chr3 182687617 182687650 -35349508 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 39 38 0 0 chr3 182688031 182688084 -35349074 + AT_rich Low_complexity Low_complexity 1 53 0 720 235 8 76 chr3 182688213 182688451 -35348707 + LTR1B LTR ERV1 1 222 -604 1150 281 178 35 chr3 182688552 182689568 -35347590 + L2 LINE L2 2135 3295 -18 342 67 0 0 chr3 182689584 182689629 -35347529 + (TA)n Simple_repeat Simple_repeat 2 46 0 577 284 23 17 chr3 182690889 182691065 -35346093 - MER69A DNA AcHobo 0 177 1 1181 186 60 167 chr3 182691642 182692163 -35344995 - MER67D LTR ERV1 0 514 50 7543 194 153 39 chr3 182692193 182694430 -35342728 - L1 LINE L1 -1384 4762 2271 27 35 0 0 chr3 182694470 182694499 -35342659 + GC_rich Low_complexity Low_complexity 1 29 0 30 45 0 0 chr3 182694801 182694845 -35342313 + GC_rich Low_complexity Low_complexity 1 44 0 236 274 0 24 chr3 182695111 182695195 -35341963 + CT-rich Low_complexity Low_complexity 1 82 0 243 61 0 0 chr3 182695240 182695273 -35341885 + (GA)n Simple_repeat Simple_repeat 2 34 0 505 263 60 63 chr3 182695907 182696322 -35340836 + HAL1 LINE L1 893 1306 -1201 745 215 13 0 chr3 182696341 182696490 -35340668 + MLT1E3 LTR MaLR 474 624 0 29 0 0 0 chr3 182696565 182696594 -35340564 + AT_rich Low_complexity Low_complexity 1 29 0 194 374 20 27 chr3 182696759 182696906 -35340252 + MIR SINE MIR 75 220 -42 370 349 26 16 chr3 182697727 182697916 -35339242 - MIR SINE MIR 0 262 72 181 339 77 0 chr3 182697962 182698027 -35339131 - L2 LINE L2 0 3272 3203 25 31 0 0 chr3 182698134 182698166 -35338992 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr3 182698577 182698602 -35338556 + AT_rich Low_complexity Low_complexity 1 25 0 528 382 37 55 chr3 182698689 182699251 -35337907 - MER52A LTR ERV1 -2 1753 1078 275 143 226 0 chr3 182699236 182699320 -35337838 - MER52A LTR ERV1 -852 903 801 * 1835 197 51 31 chr3 182699399 182699942 -35337216 - MLT2A2 LTR ERVL 0 554 1 521 261 0 0 chr3 182699953 182700068 -35337090 - LTR28 LTR ERV1 -905 115 1 333 310 11 0 chr3 182700195 182700282 -35336876 + L1MC/D LINE L1 5513 5600 -2208 229 271 17 8 chr3 182700429 182700547 -35336611 + (TA)n Simple_repeat Simple_repeat 1 119 0 335 290 107 8 chr3 182700565 182700696 -35336462 + L1M4 LINE L1 2670 2813 -3333 21 0 0 0 chr3 182700940 182700961 -35336197 + AT_rich Low_complexity Low_complexity 1 21 0 489 262 8 0 chr3 182700962 182701107 -35336051 - L1ME1 LINE L1 -5 6161 6013 506 252 83 35 chr3 182701134 182701448 -35335710 - L1M4 LINE L1 -1645 4999 4671 229 244 0 0 chr3 182701448 182701493 -35335665 + CT-rich Low_complexity Low_complexity 3 47 0 253 248 106 50 chr3 182701498 182701639 -35335519 - L1M4 LINE L1 -1954 4690 4542 416 307 74 0 chr3 182701655 182701857 -35335301 - L1M4 LINE L1 -2166 4478 4262 2059 266 92 25 chr3 182701857 182702238 -35334920 - L1M4 LINE L1 -2743 3901 3547 1336 146 55 9 chr3 182702238 182702458 -35334700 - MER30 DNA MER1_type 0 230 1 2059 266 92 25 chr3 182702458 182703660 -35333498 - L1M4 LINE L1 -3097 3547 2270 393 309 121 9 chr3 182703787 182704144 -35333014 - L1M4 LINE L1 -4619 2025 1541 22 0 0 0 chr3 182704288 182704310 -35332848 + AT_rich Low_complexity Low_complexity 1 22 0 11327 221 17 57 chr3 182704310 182708080 -35329078 + L1M2 LINE L1 1645 5181 -1667 1909 134 27 20 chr3 182708080 182708379 -35328779 + AluSx SINE Alu 5 305 -7 11327 221 17 57 chr3 182708379 182708908 -35328250 + L1M2 LINE L1 5181 5730 -1118 633 201 7 0 chr3 182708908 182709047 -35328111 + L1MA4A LINE L1 6164 6303 0 632 268 108 70 chr3 182709055 182709712 -35327446 + L1MC4 LINE L1 6703 7384 -658 263 333 0 0 chr3 182710083 182710182 -35326976 + L1MEc LINE L1 786 884 -5512 268 292 56 22 chr3 182710354 182710532 -35326626 + L1MEc LINE L1 939 1122 -5083 2783 211 26 8 chr3 182710538 182711043 -35326115 + MLT2B3 LTR ERVL 2 519 -35 564 15 0 0 chr3 182711043 182711108 -35326050 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 2783 211 26 8 chr3 182711108 182711137 -35326021 + MLT2B3 LTR ERVL 519 546 -8 3333 246 70 7 chr3 182711142 182712094 -35325064 + ERVL LTR ERVL 2 1029 -4660 3235 214 32 3 chr3 182712090 182712741 -35324417 + ERVL LTR ERVL 1189 1858 -3906 * 10310 172 30 8 chr3 182712758 182713264 -35323894 + ERVL LTR ERVL 2048 2541 -3223 182 62 31 0 chr3 182713264 182713296 -35323862 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 10310 172 30 8 chr3 182713296 182714667 -35322491 + ERVL LTR ERVL 2541 3966 -1798 234 259 0 0 chr3 182714668 182714722 -35322436 + MLT2B3 LTR ERVL 499 552 -2 434 322 102 12 chr3 182714725 182714980 -35322178 + L1MEc LINE L1 1121 1398 -4817 22 0 0 0 chr3 182715441 182715463 -35321695 + AT_rich Low_complexity Low_complexity 1 22 0 1312 96 0 0 chr3 182715484 182715651 -35321507 - AluSq SINE Alu 0 313 147 405 300 43 48 chr3 182715761 182715991 -35321167 + L1MEc LINE L1 1474 1702 -4513 810 301 26 15 chr3 182716011 182716678 -35320480 + L1MEc LINE L1 1975 2611 -3604 532 286 32 12 chr3 182716680 182716928 -35320230 + L1ME2 LINE L1 5902 6154 -10 25 31 0 0 chr3 182717120 182717152 -35320006 + AT_rich Low_complexity Low_complexity 1 32 0 685 246 26 5 chr3 182717191 182717382 -35319776 + MER58 DNA MER1_type 3 197 -2223 1904 162 0 19 chr3 182718479 182718794 -35318364 - AluSx SINE Alu -3 309 1 307 232 43 0 chr3 182719277 182719346 -35317812 + MER21B LTR ERV1 15 86 -777 1475 265 118 31 chr3 182719373 182719913 -35317245 + MER21B LTR ERV1 19 605 -258 267 146 0 0 chr3 182719922 182719963 -35317195 + MER21A LTR ERV1 773 813 -118 225 247 14 14 chr3 182720800 182720873 -35316285 + L1ME2 LINE L1 6082 6154 -10 741 194 66 45 chr3 182720948 182721190 -35315968 + LTR1B LTR ERV1 1 247 -579 12208 182 41 10 chr3 182721490 182722258 -35314900 - L1 LINE L1 -3839 3726 2984 180 0 0 0 chr3 182722258 182722278 -35314880 + (TTG)n Simple_repeat Simple_repeat 2 21 0 12208 182 41 10 chr3 182722278 182722846 -35314312 - L1 LINE L1 -4581 2984 2436 2127 122 3 0 chr3 182722846 182723140 -35314018 - AluSg SINE Alu -15 295 1 12208 182 41 10 chr3 182723140 182724366 -35312792 - L1 LINE L1 -5129 2436 1080 209 125 0 21 chr3 182724675 182724723 -35312435 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 1106 258 45 29 chr3 182724801 182725285 -35311873 - L1ME2 LINE L1 -45 6119 5628 1119 233 64 35 chr3 182725810 182726214 -35310944 - LTR52 LTR ERVL -3 418 3 207 352 56 24 chr3 182726359 182726482 -35310676 + MIR SINE MIR 29 155 -107 419 338 26 0 chr3 182726482 182726636 -35310522 + MIR SINE MIR 2 159 -103 235 321 0 0 chr3 182727175 182727256 -35309902 + MIR SINE MIR 151 231 -31 22 0 0 0 chr3 182727798 182727820 -35309338 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr3 182728413 182728434 -35308724 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 347 162 27 0 chr3 182729699 182729773 -35307385 + GA-rich Low_complexity Low_complexity 3 78 0 654 134 252 0 chr3 182729787 182729906 -35307252 + AluSq SINE Alu 6 154 -159 617 127 9 64 chr3 182729904 182729924 -35307234 - AluSg SINE Alu -203 107 87 * 6783 64 42 0 chr3 182729924 182730785 -35306373 + MER11D LTR ERVK 1 897 0 617 127 9 64 chr3 182730785 182730874 -35306284 - AluSg SINE Alu -223 87 4 23 0 0 0 chr3 182730921 182730944 -35306214 + AT_rich Low_complexity Low_complexity 1 23 0 232 246 31 0 chr3 182731545 182731610 -35305548 + L1MEd LINE L1 316 382 -5737 4281 78 0 0 chr3 182731617 182732203 -35304955 - THE1B-int LTR MaLR -994 586 1 2221 136 19 30 chr3 182732203 182732571 -35304587 - THE1B LTR MaLR 0 364 1 2088 132 0 0 chr3 182732792 182733079 -35304079 + AluSc SINE Alu 1 287 -22 4254 252 49 16 chr3 182733098 182734462 -35302696 + L1MA9 LINE L1 2448 3874 -2272 2183 132 7 0 chr3 182734462 182734772 -35302386 - AluSx SINE Alu 0 312 1 4254 252 49 16 chr3 182734772 182734992 -35302166 + L1MA9 LINE L1 3874 4085 -2061 1204 195 111 26 chr3 182734977 182735287 -35301871 + L1MA9 LINE L1 5454 5797 -515 * 258 32 0 0 chr3 182735287 182735318 -35301840 + (CA)n Simple_repeat Simple_repeat 2 32 0 1204 195 111 26 chr3 182735318 182735351 -35301807 + L1MA9 LINE L1 5797 5826 -486 1186 204 19 19 chr3 182735354 182735667 -35301491 + L1MA9 LINE L1 5990 6302 -10 1051 242 63 44 chr3 182736636 182736999 -35300159 + MLT1A2 LTR MaLR 1 370 -4 289 295 77 0 chr3 182737381 182737459 -35299699 - L2 LINE L2 -38 3234 3151 341 43 21 0 chr3 182737992 182738039 -35299119 + (TTTTC)n Simple_repeat Simple_repeat 2 49 0 2379 214 43 0 chr3 182738469 182739030 -35298128 - L1MB1 LINE L1 -280 5888 5304 1355 162 57 0 chr3 182739030 182739295 -35297863 + L1MB1 LINE L1 5889 6168 0 373 232 93 26 chr3 182739537 182739688 -35297470 + MER105 DNA DNA 11 171 -33 2108 119 3 35 chr3 182740248 182740559 -35296599 - AluSg SINE Alu -9 301 1 205 262 49 0 chr3 182740691 182740752 -35296406 + L2 LINE L2 1374 1437 -1877 318 165 0 0 chr3 182741014 182741093 -35296065 + (TA)n Simple_repeat Simple_repeat 1 79 0 31 0 0 0 chr3 182741686 182741717 -35295441 + AT_rich Low_complexity Low_complexity 1 31 0 349 344 108 0 chr3 182741819 182742014 -35295144 - L2 LINE L2 -707 2607 2392 22 35 0 0 chr3 182742064 182742093 -35295065 + AT_rich Low_complexity Low_complexity 1 29 0 300 342 114 39 chr3 182743344 182743625 -35293533 - L2 LINE L2 -789 2525 2224 1054 71 0 0 chr3 182743772 182743912 -35293246 - MER4E LTR ERV1 -626 140 1 38 0 0 0 chr3 182743947 182743985 -35293173 + AT_rich Low_complexity Low_complexity 1 38 0 227 216 0 0 chr3 182744011 182744062 -35293096 - L1MB1 LINE L1 -1162 4984 4934 * 2183 190 86 0 chr3 182744060 182744656 -35292502 + L1 LINE L1 3092 3748 -2398 1396 199 11 39 chr3 182744852 182745172 -35291986 - AluJo SINE Alu 0 318 7 411 285 32 37 chr3 182746538 182746728 -35290430 - MLT1J LTR MaLR -299 178 1 218 237 158 13 chr3 182747089 182747165 -35289993 - L2 LINE L2 0 3272 3186 401 352 143 29 chr3 182747749 182748294 -35288864 - L2 LINE L2 -348 2966 2360 1994 106 0 0 chr3 182748440 182748705 -35288453 + AluY SINE Alu 35 299 -12 223 223 21 43 chr3 182748812 182748906 -35288252 + (TATATG)n Simple_repeat Simple_repeat 5 96 0 583 297 63 24 chr3 182748921 182749254 -35287904 - LTR52 LTR ERVL -7 414 69 2195 150 28 19 chr3 182749408 182749769 -35287389 - THE1B LTR MaLR 0 364 1 11117 122 2 0 chr3 182749769 182751346 -35285812 - THE1B-int LTR MaLR 0 1580 1 1513 172 144 28 chr3 182751346 182751672 -35285486 - THE1B LTR MaLR 0 364 1 10379 114 15 3 chr3 182751672 182753196 -35283962 + THE1B-int LTR MaLR 39 1580 0 1096 180 71 29 chr3 182753196 182753511 -35283647 + THE1B LTR MaLR 1 355 0 327 47 0 0 chr3 182753511 182753554 -35283604 - THE1B-int LTR MaLR -1537 43 1 2159 120 53 36 chr3 182753554 182753912 -35283246 - THE1B LTR MaLR 0 364 1 206 296 0 11 chr3 182754158 182754246 -35282912 + (TA)n Simple_repeat Simple_repeat 2 88 0 380 218 113 30 chr3 182754681 182754814 -35282344 + LTR40a LTR ERVL 8 151 -368 685 311 35 25 chr3 182754959 182755277 -35281881 + LTR40a LTR ERVL 180 500 -19 2056 207 131 37 chr3 182755312 182756019 -35281139 + LTR1B LTR ERV1 2 778 -7 1769 217 7 57 chr3 182756025 182756482 -35280676 + HUERS-P2 LTR ERV1 1 434 -2654 12899 171 12 12 chr3 182756800 182759885 -35277273 + HUERS-P2 LTR ERV1 584 3867 -417 1529 290 58 41 chr3 182760001 182760635 -35276523 - MLT2F LTR ERVL -2 661 17 241 389 27 13 chr3 182760669 182760818 -35276340 - L2 LINE L2 -339 2975 2825 376 267 33 33 chr3 182760964 182761084 -35276074 - MER5B DNA MER1_type 0 178 59 1884 183 80 109 chr3 182761886 182762590 -35274568 - LTR8A LTR ERV1 -44 683 1 1698 192 57 45 chr3 182762590 182763316 -35273842 + L1M4 LINE L1 4994 5716 -462 4590 219 29 13 chr3 182763436 182764485 -35272673 - L1M1 LINE L1 -6485 1080 16 26 30 0 0 chr3 182764771 182764804 -35272354 + AT_rich Low_complexity Low_complexity 1 33 0 462 317 137 23 chr3 182765012 182765552 -35271606 - L2 LINE L2 -91 3222 2620 280 226 22 51 chr3 182765645 182765782 -35271376 + (GGGTG)n Simple_repeat Simple_repeat 2 134 0 210 91 0 0 chr3 182866301 182866334 -35170824 + (T)n Simple_repeat Simple_repeat 1 33 0 1750 177 9 22 chr3 182867219 182867535 -35169623 - AluJo SINE Alu 0 312 1 189 213 0 0 chr3 182867909 182867956 -35169202 + (CGTG)n Simple_repeat Simple_repeat 4 50 0 25 51 0 0 chr3 182869268 182869307 -35167851 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr3 182869358 182869387 -35167771 + AT_rich Low_complexity Low_complexity 1 29 0 369 0 0 0 chr3 182870023 182870064 -35167094 + (TG)n Simple_repeat Simple_repeat 2 42 0 826 222 82 0 chr3 182871100 182871307 -35165851 + MER58A DNA MER1_type 1 224 0 401 335 103 13 chr3 182871307 182871531 -35165627 + MIR SINE MIR 17 260 -2 528 114 38 0 chr3 182873405 182873537 -35163621 + (TA)n Simple_repeat Simple_repeat 2 138 0 482 273 25 0 chr3 182873656 182873817 -35163341 + L1MB7 LINE L1 3296 3460 -2686 * 3796 198 66 38 chr3 182873813 182876019 -35161139 + L1MB7 LINE L1 3718 6110 -74 2339 67 0 0 chr3 182876019 182876322 -35160836 + AluY SINE Alu 1 303 0 3796 198 66 38 chr3 182876322 182876396 -35160762 + L1MB7 LINE L1 6110 6181 -3 21 36 0 0 chr3 182876399 182876427 -35160731 + AT_rich Low_complexity Low_complexity 1 28 0 361 280 89 34 chr3 182876855 182877091 -35160067 + L1M4 LINE L1 2191 2439 -3707 369 0 0 0 chr3 182877409 182877450 -35159708 + (TG)n Simple_repeat Simple_repeat 2 42 0 456 269 36 72 chr3 182879257 182879424 -35157734 - MIR SINE MIR -26 236 76 23 33 0 0 chr3 182879619 182879649 -35157509 + AT_rich Low_complexity Low_complexity 1 30 0 227 281 0 0 chr3 182879896 182879953 -35157205 + Charlie8 DNA MER1_type 2352 2408 -9 407 132 13 26 chr3 182880553 182880629 -35156529 + MER116 DNA Mariner 6 80 0 844 279 212 40 chr3 182880765 182881759 -35155399 + L2 LINE L2 2093 3266 -47 537 229 8 53 chr3 182881905 182882036 -35155122 + L2 LINE L2 3188 3312 -1 189 0 0 0 chr3 182884451 182884472 -35152686 + (T)n Simple_repeat Simple_repeat 1 21 0 1928 168 90 55 chr3 182884478 182884965 -35152193 - LTR22 LTR ERVK -5 504 1 1651 169 0 43 chr3 182884965 182885266 -35151892 - AluJb SINE Alu -24 288 1 296 269 26 0 chr3 182885770 182885848 -35151310 - MIR3 SINE MIR -1 207 128 196 296 88 56 chr3 182885883 182886008 -35151150 + L2 LINE L2 3185 3313 0 198 0 0 0 chr3 182886167 182886189 -35150969 + (CA)n Simple_repeat Simple_repeat 1 22 0 2119 141 0 0 chr3 182886293 182886591 -35150567 + AluSx SINE Alu 1 298 -14 1402 192 34 12 chr3 182886965 182887288 -35149870 + L1MC4a LINE L1 6890 7219 -589 1180 206 48 37 chr3 182887290 182887583 -35149575 + L1MC4a LINE L1 6194 7808 0 193 261 65 33 chr3 182887632 182887724 -35149434 - MIR SINE MIR -86 176 82 2710 169 43 18 chr3 182887859 182888057 -35149101 + L1PA16 LINE L1 5583 5775 -391 189 0 0 0 chr3 182888057 182888078 -35149080 + (TA)n Simple_repeat Simple_repeat 2 22 0 2710 169 43 18 chr3 182888078 182888435 -35148723 + L1PA16 LINE L1 5775 6152 -14 217 301 122 41 chr3 182888445 182888568 -35148590 - MIR3 SINE MIR -75 133 1 186 133 0 0 chr3 182888616 182888646 -35148512 + (TATG)n Simple_repeat Simple_repeat 1 30 0 317 197 0 0 chr3 182888676 182888737 -35148421 - L1MC4a LINE L1 -589 7219 7159 252 333 0 0 chr3 182888790 182888859 -35148299 - L2 LINE L2 -250 3022 2954 180 0 0 0 chr3 182889005 182889025 -35148133 + (TA)n Simple_repeat Simple_repeat 2 21 0 441 0 0 0 chr3 182889218 182889267 -35147891 + (TG)n Simple_repeat Simple_repeat 2 50 0 1264 267 108 26 chr3 182890692 182891182 -35145976 + L2 LINE L2 1345 1874 -1440 630 286 75 45 chr3 182891171 182891479 -35145679 + L2 LINE L2 2849 3165 -148 * 399 279 85 0 chr3 182891617 182891746 -35145412 + MIR SINE MIR 28 167 -95 336 312 116 7 chr3 182891742 182891880 -35145278 - L2 LINE L2 -2 3270 3118 * 330 26 0 0 chr3 182892014 182892053 -35145105 + (TG)n Simple_repeat Simple_repeat 2 40 0 1155 189 0 15 chr3 182892053 182892254 -35144904 - AluJb SINE Alu -29 283 86 342 360 23 11 chr3 182892308 182892483 -35144675 - MER5A DNA MER1_type -6 183 7 2101 112 75 29 chr3 182892898 182893246 -35143912 - THE1B LTR MaLR 0 364 1 11802 97 2 0 chr3 182893246 182894822 -35142336 - THE1B-int LTR MaLR 0 1580 1 2079 129 21 61 chr3 182894822 182895201 -35141957 - THE1B LTR MaLR 0 364 1 11907 123 14 27 chr3 182895201 182897141 -35140017 + Tigger1 DNA MER2_type 504 2418 0 2205 104 0 0 chr3 182897627 182897946 -35139212 - AluSc SINE Alu 0 319 1 585 215 53 14 chr3 182898363 182898572 -35138586 - L1MC/D LINE L1 -2337 5471 5255 205 257 18 0 chr3 182898744 182898853 -35138305 + (TA)n Simple_repeat Simple_repeat 2 112 0 375 286 129 0 chr3 182899098 182899353 -35137805 - L1MC/D LINE L1 -1372 4774 4487 432 221 54 72 chr3 182899383 182899605 -35137553 - L1MC5 LINE L1 -379 7582 7365 755 293 83 48 chr3 182899736 182900111 -35137047 + L1MC4 LINE L1 5550 5937 -1871 267 79 0 0 chr3 182900464 182900502 -35136656 + (TG)n Simple_repeat Simple_repeat 1 38 0 201 242 45 61 chr3 182900549 182900615 -35136543 + L3 LINE CR1 1491 1555 -22 379 295 53 32 chr3 182900620 182900810 -35136348 + MIR SINE MIR 2 195 -67 360 324 20 0 chr3 182901376 182901478 -35135680 + FLAM_A SINE Alu 3 106 -27 378 0 0 0 chr3 182901478 182901520 -35135638 + (TC)n Simple_repeat Simple_repeat 2 43 0 325 311 0 0 chr3 182901532 182901622 -35135536 - L1MC4 LINE L1 -1339 6703 6614 307 330 19 0 chr3 182901560 182901663 -35135495 + L1MC4 LINE L1 6614 6718 -1324 * 230 290 60 30 chr3 182901925 182902025 -35135133 + L3b LINE CR1 1368 1470 -113 380 208 13 0 chr3 182902867 182902944 -35134214 + MER116 DNA Mariner 3 80 0 2236 134 0 15 chr3 182903160 182903502 -35133656 + MER1B DNA MER1_type 1 337 0 1342 94 17 0 chr3 182903880 182904113 -35133045 - AluSg/x SINE Alu 0 336 101 396 278 19 9 chr3 182904363 182904471 -35132687 + L2 LINE L2 3205 3313 0 413 81 0 0 chr3 182904571 182904633 -35132525 + Alu SINE Alu 241 302 -10 713 253 95 5 chr3 182905321 182905511 -35131647 - MER3 DNA MER1_type 0 209 3 2006 161 64 44 chr3 182905511 182905965 -35131193 + MER31B LTR ERV1 1 463 -3 24 0 0 0 chr3 182906320 182906344 -35130814 + AT_rich Low_complexity Low_complexity 1 24 0 1735 158 98 53 chr3 182906424 182906803 -35130355 + MSTD LTR MaLR 1 396 0 1458 181 96 136 chr3 182906886 182907643 -35129515 - LTR8A LTR ERV1 0 727 1 1204 245 30 22 chr3 182907875 182908279 -35128879 - LTR37A LTR ERV1 -2 424 18 1008 301 76 41 chr3 182908826 182909455 -35127703 - HsTC2 DNA Tc2 -1010 888 238 225 0 0 0 chr3 182910289 182910314 -35126844 + (T)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chr3 182910398 182910422 -35126736 + AT_rich Low_complexity Low_complexity 1 24 0 184 237 0 0 chr3 182911155 182911193 -35125965 - L2 LINE L2 -4 3268 3231 305 345 28 63 chr3 182911999 182912286 -35124872 - L2 LINE L2 -927 2387 2111 1984 124 29 40 chr3 182913112 182913490 -35123668 - THE1C LTR MaLR 0 375 2 2315 80 0 10 chr3 182913617 182913906 -35123252 + AluSc SINE Alu 3 288 -21 322 367 35 0 chr3 182913907 182914081 -35123077 - MIR SINE MIR -51 211 31 584 253 103 6 chr3 182914122 182914296 -35122862 + MIR SINE MIR 7 197 -65 2508 153 20 94 chr3 182914570 182914875 -35122283 - Tigger3(Golem) DNA MER2_type -10 3019 2778 2488 49 0 16 chr3 182914875 182915182 -35121976 + AluSx SINE Alu 1 302 -10 2508 153 20 94 chr3 182915182 182915472 -35121686 - Tigger3(Golem) DNA MER2_type -251 2778 2468 548 155 39 0 chr3 182915481 182915584 -35121574 + Tigger3(Golem) DNA MER2_type 2616 2722 -307 2992 96 86 14 chr3 182915592 182916082 -35121076 - Tigger3b DNA MER2_type -551 680 156 184 349 15 0 chr3 182917573 182917639 -35119519 + L2 LINE L2 3154 3220 -52 1811 168 7 3 chr3 182920507 182920810 -35116348 + AluSx SINE Alu 3 306 -6 182 191 255 0 chr3 182920825 182920872 -35116286 - MIR SINE MIR -10 252 194 275 250 0 12 chr3 182921012 182921092 -35116066 + L1MC4 LINE L1 6614 6692 -1350 1615 174 39 18 chr3 182922119 182922239 -35114919 + AluJo SINE Alu 1 117 -195 198 0 0 0 chr3 182922239 182922261 -35114897 + (TA)n Simple_repeat Simple_repeat 2 23 0 1615 174 39 18 chr3 182922261 182922421 -35114737 + AluJo SINE Alu 117 287 -25 312 27 0 0 chr3 182922498 182922535 -35114623 + (TG)n Simple_repeat Simple_repeat 2 38 0 832 121 29 0 chr3 182923090 182923230 -35113928 - L1PB1 LINE L1 -3 6148 6005 270 143 0 0 chr3 182923600 182923649 -35113509 + (TTCTCC)n Simple_repeat Simple_repeat 5 53 0 255 204 23 34 chr3 182924891 182924979 -35112179 + (TTATA)n Simple_repeat Simple_repeat 5 91 0 6216 77 37 0 chr3 182925018 182926231 -35110927 - L1PA10 LINE L1 -4 6164 4931 1633 142 16 0 chr3 182927404 182927657 -35109501 + L1PA16 LINE L1 5895 6151 -15 6946 47 13 3 chr3 182927721 182928589 -35108569 - L1PA7 LINE L1 -14 6140 5265 23 0 0 0 chr3 182928595 182928618 -35108540 + AT_rich Low_complexity Low_complexity 1 23 0 234 0 0 0 chr3 182929458 182929484 -35107674 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2019 112 0 37 chr3 182929486 182929782 -35107376 - AluSx SINE Alu -27 285 1 24 0 0 0 chr3 182930085 182930109 -35107049 + AT_rich Low_complexity Low_complexity 1 24 0 589 263 19 93 chr3 182930124 182930383 -35106775 + MIR SINE MIR 11 250 -12 23 33 0 0 chr3 182930393 182930423 -35106735 + AT_rich Low_complexity Low_complexity 1 30 0 7788 12 1 0 chr3 182930603 182931979 -35105179 + L1PA3 LINE L1 4804 6180 0 412 259 119 0 chr3 182932154 182932297 -35104861 - MIR SINE MIR -18 244 85 595 277 48 29 chr3 182932445 182932651 -35104507 + MIR SINE MIR 43 252 -10 1448 200 0 35 chr3 182933218 182933508 -35103650 + AluJo SINE Alu 4 283 -29 25 95 0 0 chr3 182933669 182933743 -35103415 + AT_rich Low_complexity Low_complexity 1 74 0 4362 72 22 1 chr3 182933805 182934593 -35102565 - L1P3 LINE L1 -611 5561 4762 4248 79 0 7 chr3 182934593 182935163 -35101995 + L1PA8 LINE L1 5598 6164 -8 25 0 0 0 chr3 182935518 182935543 -35101615 + AT_rich Low_complexity Low_complexity 1 25 0 209 299 139 36 chr3 182936191 182936328 -35100830 + L2 LINE L2 3116 3266 -6 21 0 0 0 chr3 182936473 182936494 -35100664 + AT_rich Low_complexity Low_complexity 1 21 0 2141 117 0 3 chr3 182936499 182936789 -35100369 + AluSq SINE Alu 1 289 -24 252 0 0 0 chr3 182936799 182936827 -35100331 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 254 364 13 0 chr3 182938358 182938435 -35098723 + L2 LINE L2 3186 3263 -9 5478 143 27 1 chr3 182939024 182939900 -35097258 - Tigger1 DNA MER2_type -1 2417 1519 530 171 9 9 chr3 182939915 182940020 -35097138 + MER20 DNA MER1_type 114 218 -1 207 176 0 0 chr3 182940123 182940157 -35097001 + A-rich Low_complexity Low_complexity 4 37 0 23 78 0 0 chr3 182940339 182940390 -35096768 + AT_rich Low_complexity Low_complexity 1 51 0 593 194 83 0 chr3 182940399 182940507 -35096651 + FLAM_C SINE Alu 1 117 -16 211 330 46 56 chr3 182940759 182940956 -35096202 + L2 LINE L2 2565 2759 -555 231 284 71 59 chr3 182941880 182942049 -35095109 + L2 LINE L2 2599 2769 -545 198 410 33 0 chr3 182942149 182942271 -35094887 + L2 LINE L2 2934 3059 -213 520 327 92 33 chr3 182942529 182942951 -35094207 + L2 LINE L2 2842 3288 -25 240 86 0 0 chr3 182942955 182942990 -35094168 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 216 355 0 0 chr3 182943326 182943388 -35093770 + L2 LINE L2 3252 3313 0 297 338 52 22 chr3 182943710 182943846 -35093312 - L2 LINE L2 0 3272 3133 2213 126 0 0 chr3 182944044 182944354 -35092804 - AluSx SINE Alu -2 310 1 1544 130 48 55 chr3 182944717 182945010 -35092148 - AluJb SINE Alu -21 291 1 222 352 67 0 chr3 182945716 182945821 -35091337 - L2 LINE L2 -553 2761 2650 269 331 34 48 chr3 182945891 182946244 -35090914 - L1 LINE L1 -2373 3773 3426 207 0 0 0 chr3 182946247 182946270 -35090888 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2304 59 0 7 chr3 182946273 182946563 -35090595 - AluY SINE Alu -23 288 1 2103 101 0 7 chr3 182946678 182946992 -35090166 - AluSq SINE Alu 0 312 1 38 51 0 0 chr3 182947783 182947842 -35089316 + AT_rich Low_complexity Low_complexity 1 59 0 768 209 0 0 chr3 182947844 182947978 -35089180 - AluJo SINE Alu -178 134 1 1113 140 22 0 chr3 182948673 182948851 -35088307 - MLT1B LTR MaLR -5 385 204 4923 159 66 23 chr3 182948869 182950416 -35086742 + MER52A LTR ERV1 1 1755 0 1352 177 132 27 chr3 182950477 182950811 -35086347 - MLT2D LTR ERVL -45 369 1 1095 182 66 0 chr3 182950811 182951007 -35086151 - MLT1B LTR MaLR -181 209 1 21 0 0 0 chr3 182952021 182952042 -35085116 + AT_rich Low_complexity Low_complexity 1 21 0 1604 150 27 7 chr3 182952124 182952417 -35084741 - L1MA3 LINE L1 0 6305 6007 199 89 0 44 chr3 182952910 182952955 -35084203 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 1380 208 3 29 chr3 182953426 182953738 -35083420 + AluJo SINE Alu 6 309 -3 426 108 0 0 chr3 182953749 182953814 -35083344 + (GGAA)n Simple_repeat Simple_repeat 3 67 0 197 333 118 10 chr3 182955298 182955400 -35081758 + MER5A DNA MER1_type 76 188 -1 440 274 140 38 chr3 182955495 182955652 -35081506 - MER5A DNA MER1_type 0 189 17 2116 101 0 23 chr3 182956240 182956548 -35080610 - AluSq SINE Alu -10 303 3 267 31 0 0 chr3 182958011 182958043 -35079115 + (TG)n Simple_repeat Simple_repeat 1 32 0 228 362 11 0 chr3 182958373 182958467 -35078691 - MIR SINE MIR -111 151 57 1693 176 20 3 chr3 182958645 182958951 -35078207 + AluJb SINE Alu 1 311 -1 2537 217 61 95 chr3 182959341 182960829 -35076329 - L1ME1 LINE L1 -18 6542 5106 627 213 18 12 chr3 182960827 182960991 -35076167 - L1ME1 LINE L1 -3501 3039 2875 * 2330 274 52 9 chr3 182961006 182961939 -35075219 - L1ME1 LINE L1 -3891 2649 1676 256 290 215 9 chr3 182962148 182962255 -35074903 - MER5A DNA MER1_type -1 188 60 1258 169 6 110 chr3 182963720 182964057 -35073101 - AluJo SINE Alu 0 302 1 22 0 0 0 chr3 182964068 182964090 -35073068 + AT_rich Low_complexity Low_complexity 1 22 0 360 303 127 10 chr3 182964427 182964612 -35072546 + MIR SINE MIR 2 207 -55 1478 249 115 53 chr3 182964664 182965362 -35071796 + HsTC2a DNA Tc2 1 741 -3 27 0 0 0 chr3 182965714 182965741 -35071417 + AT_rich Low_complexity Low_complexity 1 27 0 2321 93 0 3 chr3 182966832 182967142 -35070016 - AluSx SINE Alu -3 309 1 206 322 158 35 chr3 182967594 182967796 -35069362 - L2 LINE L2 -17 3255 3029 28 48 0 0 chr3 182968880 182968922 -35068236 + AT_rich Low_complexity Low_complexity 1 42 0 781 273 119 34 chr3 182968993 182969381 -35067777 + MLT1J2 LTR MaLR 23 443 -7 1816 173 17 3 chr3 182969537 182969838 -35067320 - AluJo SINE Alu -5 307 3 242 316 120 0 chr3 182970268 182970385 -35066773 - L2 LINE L2 0 3313 3183 240 237 26 26 chr3 182970472 182970548 -35066610 + L1ME2 LINE L1 6086 6161 -3 626 221 8 31 chr3 182970602 182970729 -35066429 + FLAM_A SINE Alu 1 124 -9 516 158 83 67 chr3 182971392 182971512 -35065646 + THE1C LTR MaLR 1 122 -253 * 1577 158 34 31 chr3 182971499 182971821 -35065337 + THE1C LTR MaLR 53 375 0 282 282 26 0 chr3 182972231 182972309 -35064849 - MIR3 SINE MIR -37 171 92 386 295 155 0 chr3 182972316 182972445 -35064713 - MIR SINE MIR -112 150 2 307 89 0 0 chr3 182972526 182972571 -35064587 + MADE1 DNA Mariner 34 78 -2 218 261 174 0 chr3 182973346 182973415 -35063743 - L2 LINE L2 -4 3268 3188 257 291 43 21 chr3 182973861 182974002 -35063156 + L1ME LINE L1 5741 5884 -280 264 133 89 0 chr3 182974049 182974094 -35063064 - MLT1L LTR MaLR 0 390 342 275 85 21 0 chr3 182974100 182974147 -35063011 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 1597 198 47 17 chr3 182974184 182974528 -35062630 + MLT1A1 LTR MaLR 12 365 0 350 285 24 0 chr3 182974683 182974806 -35062352 - L1MEc LINE L1 -6160 236 111 21 71 0 0 chr3 182975205 182975247 -35061911 + AT_rich Low_complexity Low_complexity 1 42 0 25 51 0 0 chr3 182975976 182976015 -35061143 + AT_rich Low_complexity Low_complexity 1 39 0 4893 140 43 62 chr3 182976018 182976170 -35060988 - L1MA6 LINE L1 -13 6287 6134 1433 131 9 146 chr3 182976170 182976506 -35060652 + AluJo SINE Alu 1 290 -22 4893 140 43 62 chr3 182976506 182977074 -35060084 - L1MA6 LINE L1 -166 6134 5591 2451 71 0 13 chr3 182977074 182977382 -35059776 - AluY SINE Alu -7 304 1 4893 140 43 62 chr3 182977382 182977712 -35059446 - L1MA6 LINE L1 -709 5591 5256 241 235 0 59 chr3 182978515 182978600 -35058558 - L1MC5 LINE L1 -44 7917 7838 286 347 103 50 chr3 182978717 182979086 -35058072 + L2 LINE L2 2140 2488 -826 1262 173 36 55 chr3 182979086 182979416 -35057742 - MER33 DNA MER1_type 0 324 1 286 347 103 50 chr3 182979416 182979657 -35057501 + L2 LINE L2 2488 2839 -475 517 234 36 36 chr3 182980008 182980175 -35056983 - MLT1L LTR MaLR -446 169 3 253 258 8 102 chr3 182980347 182980475 -35056683 - MIR SINE MIR -62 200 85 849 179 13 13 chr3 182980564 182980720 -35056438 + MER5A DNA MER1_type 34 189 0 193 288 55 27 chr3 182980974 182981047 -35056111 + L3b LINE CR1 1285 1359 -224 308 136 106 0 chr3 182981670 182981736 -35055422 + MIR SINE MIR 78 150 -112 681 199 15 75 chr3 182981737 182981803 -35055355 - MER5A DNA MER1_type 0 189 121 2272 104 0 0 chr3 182981803 182982110 -35055048 + AluSg SINE Alu 1 307 -3 681 199 15 75 chr3 182982110 182982244 -35054914 - MER5A DNA MER1_type -68 121 1 252 293 83 11 chr3 182982546 182982720 -35054438 + L1ME LINE L1 5515 5707 -414 468 35 0 0 chr3 182982894 182982952 -35054206 + (TG)n Simple_repeat Simple_repeat 2 59 0 212 219 134 37 chr3 182984005 182984087 -35053071 - L2 LINE L2 -188 3084 2995 299 347 41 16 chr3 182984132 182984253 -35052905 + L2 LINE L2 3148 3271 -1 252 86 0 0 chr3 182984613 182984648 -35052510 + (CA)n Simple_repeat Simple_repeat 2 36 0 1240 169 45 4 chr3 182985425 182985692 -35051466 - MER33 DNA MER1_type -8 316 39 22 0 0 0 chr3 182986251 182986273 -35050885 + AT_rich Low_complexity Low_complexity 1 22 0 183 279 0 0 chr3 182986640 182986683 -35050475 + L3 LINE CR1 1429 1471 -106 372 188 200 0 chr3 182986920 182987005 -35050153 - L2 LINE L2 -26 3287 3186 24 67 0 0 chr3 182987030 182987075 -35050083 + AT_rich Low_complexity Low_complexity 1 45 0 1451 149 118 0 chr3 182987587 182987883 -35049275 + L1MA8 LINE L1 5959 6289 -2 1788 118 96 0 chr3 182988582 182988852 -35048306 + AluSg SINE Alu 3 298 -12 190 294 59 0 chr3 182989004 182989055 -35048103 - L2 LINE L2 -191 3081 3028 397 274 76 6 chr3 182989767 182989924 -35047234 + L1ME LINE L1 5482 5649 -472 216 0 0 0 chr3 182991594 182991618 -35045540 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2352 54 4 0 chr3 182991622 182991901 -35045257 - AluY SINE Alu -31 280 1 199 245 0 0 chr3 182991948 182991997 -35045161 - MER5A DNA MER1_type 0 189 141 1510 118 18 13 chr3 182992088 182992317 -35044841 + MER30 DNA MER1_type 1 230 0 23 33 0 0 chr3 182993994 182994024 -35043134 + AT_rich Low_complexity Low_complexity 1 30 0 228 283 53 35 chr3 182994111 182994224 -35042934 - L1M1 LINE L1 -3900 3665 3551 235 278 95 71 chr3 182995562 182995900 -35041258 + L1ME LINE L1 5475 5820 -301 25 31 0 0 chr3 182996480 182996512 -35040646 + AT_rich Low_complexity Low_complexity 1 32 0 731 208 66 59 chr3 182996751 182997039 -35040119 - MER34B LTR ERV1 0 565 276 1939 131 3 32 chr3 182997066 182997426 -35039732 + AluSx SINE Alu 5 355 0 438 221 9 83 chr3 182997426 182997598 -35039560 - MER34 LTR ERV1 -278 287 78 363 60 0 0 chr3 182997598 182997648 -35039510 + (TTTTG)n Simple_repeat Simple_repeat 3 52 0 438 221 9 83 chr3 182997648 182997721 -35039437 - MER34 LTR ERV1 -487 78 1 801 176 0 23 chr3 182998115 182998246 -35038912 - FLAM_A SINE Alu -5 128 1 723 114 195 0 chr3 182998392 182998515 -35038643 - AluSg/x SINE Alu -18 292 146 216 0 0 0 chr3 182998850 182998874 -35038284 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 247 304 89 0 chr3 182999330 182999465 -35037693 + MIR SINE MIR 106 252 -10 3141 176 18 9 chr3 182999566 183000135 -35037023 - MER39 LTR ERV1 -1 706 133 443 230 46 0 chr3 183001537 183001624 -35035534 + L2 LINE L2 3166 3256 -16 247 220 20 0 chr3 183001583 183001633 -35035525 + MIR SINE MIR 212 262 0 * 825 242 16 5 chr3 183001633 183001819 -35035339 - MIR SINE MIR -66 196 9 598 218 95 22 chr3 183002971 183003150 -35034008 + MIR SINE MIR 59 250 -12 365 240 67 0 chr3 183004165 183004240 -35032918 - MIR SINE MIR -152 110 31 21 71 0 0 chr3 183004251 183004293 -35032865 + AT_rich Low_complexity Low_complexity 1 42 0 198 289 0 0 chr3 183004478 183004523 -35032635 + L2 LINE L2 3245 3289 -24 324 48 0 0 chr3 183005540 183005582 -35031576 + (TG)n Simple_repeat Simple_repeat 2 43 0 282 239 70 0 chr3 183005653 183005724 -35031434 + MLT1K LTR MaLR 511 586 -2 206 242 45 30 chr3 183005854 183005920 -35031238 - L2 LINE L2 -2 3270 3204 231 425 48 11 chr3 183006080 183006266 -35030892 - L2 LINE L2 -244 3028 2836 228 211 0 0 chr3 183006407 183006459 -35030699 - L1MC5 LINE L1 -85 7876 7825 304 324 35 35 chr3 183006459 183006497 -35030661 - L1M LINE L1 -2407 5401 5364 2110 111 0 39 chr3 183006497 183006804 -35030354 + AluSx SINE Alu 1 295 -17 304 324 35 35 chr3 183006804 183006910 -35030248 - L1M LINE L1 -2443 5365 5257 505 311 34 63 chr3 183006946 183008086 -35029072 - L1M4 LINE L1 -907 5239 4133 1152 189 70 120 chr3 183008107 183008297 -35028861 + MLT1B LTR MaLR 10 171 -219 350 21 21 0 chr3 183008297 183008344 -35028814 + (CA)n Simple_repeat Simple_repeat 2 49 0 1152 189 70 120 chr3 183008344 183008554 -35028604 + MLT1B LTR MaLR 171 390 0 21 36 0 0 chr3 183008623 183008651 -35028507 + AT_rich Low_complexity Low_complexity 1 28 0 380 305 7 0 chr3 183008707 183008858 -35028300 - L1M4 LINE L1 -2178 3968 3817 198 354 63 16 chr3 183009080 183009207 -35027951 + L2 LINE L2 3122 3254 -18 281 272 29 88 chr3 183009342 183009478 -35027680 - L2 LINE L2 -894 2420 2293 585 298 80 9 chr3 183009515 183009740 -35027418 - MIR SINE MIR -12 250 10 782 218 0 0 chr3 183010197 183010344 -35026814 + FRAM SINE Alu 16 162 -14 189 213 0 0 chr3 183011171 183011218 -35025940 + GA-rich Low_complexity Low_complexity 2 48 0 462 201 67 37 chr3 183011497 183011631 -35025527 + L2 LINE L2 1900 2037 -1277 315 178 56 44 chr3 183011641 183011731 -35025427 - MER45B DNA AcHobo -12 1028 938 635 159 9 0 chr3 183011739 183011852 -35025306 - MER45B DNA AcHobo -299 741 628 293 345 103 17 chr3 183012737 183012853 -35024305 - L2 LINE L2 -4 3268 3143 623 346 139 32 chr3 183013139 183013852 -35023306 + L2 LINE L2 1991 2779 -535 402 264 47 8 chr3 183013866 183013995 -35023163 - MER94 DNA DNA 0 134 1 375 323 74 83 chr3 183014026 183014447 -35022711 + L2 LINE L2 2829 3245 -27 26 0 0 0 chr3 183014662 183014688 -35022470 + AT_rich Low_complexity Low_complexity 1 26 0 2182 95 0 11 chr3 183015115 183015433 -35021725 + AluSc SINE Alu 1 315 0 231 250 16 0 chr3 183016451 183016515 -35020643 + (TA)n Simple_repeat Simple_repeat 1 65 0 206 337 23 12 chr3 183017675 183017761 -35019397 - L2 LINE L2 -23 3249 3163 2382 83 3 3 chr3 183018120 183018422 -35018736 + AluSp SINE Alu 2 303 -10 283 333 0 22 chr3 183018493 183018583 -35018575 - L2 LINE L2 -3 3269 3182 308 369 8 25 chr3 183018823 183018945 -35018213 + L2 LINE L2 3150 3269 -3 1265 209 45 56 chr3 183019592 183019951 -35017207 - MLT1D LTR MaLR -150 355 1 2451 183 54 53 chr3 183020041 183020592 -35016566 - MLT2B3 LTR ERVL 0 554 3 3734 276 116 26 chr3 183021377 183022864 -35014294 - L2 LINE L2 -511 2803 1182 2304 100 0 7 chr3 183022885 183023194 -35013964 - AluSc SINE Alu -2 307 1 258 295 16 0 chr3 183023199 183023260 -35013898 - L2 LINE L2 -2121 1193 1132 446 246 39 39 chr3 183023273 183023403 -35013755 - MER5B DNA MER1_type -40 138 9 204 40 0 0 chr3 183023613 183023638 -35013520 + (CA)n Simple_repeat Simple_repeat 1 25 0 198 0 0 0 chr3 183023638 183023660 -35013498 + (GA)n Simple_repeat Simple_repeat 1 22 0 650 132 0 0 chr3 183023780 183023871 -35013287 + AluS SINE Alu 1 91 -221 25 51 0 0 chr3 183025293 183025332 -35011826 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr3 183025816 183025838 -35011320 + AT_rich Low_complexity Low_complexity 1 22 0 1901 157 3 0 chr3 183025838 183026137 -35011021 - AluSx SINE Alu -12 300 1 545 76 13 0 chr3 183026185 183026264 -35010894 + (GGAA)n Simple_repeat Simple_repeat 3 82 0 231 181 8 94 chr3 183026765 183026892 -35010266 + (GTGTG)n Simple_repeat Simple_repeat 3 118 0 258 212 10 20 chr3 183027209 183027358 -35009800 + (TGGG)n Simple_repeat Simple_repeat 1 147 0 622 171 0 14 chr3 183027373 183027513 -35009645 + GA-rich Low_complexity Low_complexity 2 139 0 704 246 46 0 chr3 183029807 183029982 -35007176 + MIR SINE MIR 69 251 -11 182 252 19 87 chr3 183030045 183030148 -35007010 - MIR SINE MIR -83 179 84 353 164 14 0 chr3 183030650 183030723 -35006435 + GA-rich Low_complexity Low_complexity 1 74 0 28 29 0 0 chr3 183031956 183031991 -35005167 + AT_rich Low_complexity Low_complexity 1 35 0 2067 123 13 7 chr3 183032630 183032938 -35004220 - AluSx SINE Alu 0 312 3 277 279 23 12 chr3 183033694 183033780 -35003378 + L2 LINE L2 3222 3308 -5 195 352 126 31 chr3 183034413 183034572 -35002586 - MIR SINE MIR -36 226 53 521 296 211 38 chr3 183034810 183035280 -35001878 + L3 LINE CR1 884 1434 -143 340 231 42 74 chr3 183035971 183036187 -35000971 - L1ME4a LINE L1 -208 5913 5705 255 186 0 0 chr3 183036262 183036305 -35000853 - MLT2C2 LTR ERVL 0 464 422 817 204 70 4 chr3 183036377 183036562 -35000596 - MLT2B2 LTR ERVL -17 537 304 1128 164 15 31 chr3 183036565 183036675 -35000483 - MLT2B3 LTR ERVL -362 192 85 3008 183 14 21 chr3 183036675 183037192 -34999966 + MLT2B3 LTR ERVL 1 515 -39 477 0 0 0 chr3 183037192 183037245 -34999913 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 3008 183 14 21 chr3 183037245 183037285 -34999873 + MLT2B3 LTR ERVL 515 554 0 1128 164 15 31 chr3 183037285 183037369 -34999789 - MLT2B3 LTR ERVL -469 85 1 532 268 56 17 chr3 183038175 183038354 -34998804 - MER5A DNA MER1_type -3 186 1 2321 103 0 0 chr3 183040991 183041291 -34995867 + AluSx SINE Alu 1 300 -12 2487 72 0 0 chr3 183041564 183041868 -34995290 + AluY SINE Alu 1 304 -7 328 354 72 6 chr3 183043409 183043590 -34993568 - MIR3 SINE MIR -2 206 14 25 0 0 0 chr3 183045123 183045148 -34992010 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr3 183045381 183045412 -34991746 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr3 183046105 183046136 -34991022 + AT_rich Low_complexity Low_complexity 1 31 0 22 56 0 0 chr3 183047562 183047598 -34989560 + AT_rich Low_complexity Low_complexity 1 36 0 334 289 257 7 chr3 183049295 183049447 -34987711 + MIR SINE MIR 23 212 -50 1136 178 0 0 chr3 183050508 183050693 -34986465 - MER58A DNA MER1_type -4 220 36 680 327 57 16 chr3 183050798 183051046 -34986112 + MLT1I LTR MaLR 85 342 -67 210 313 131 10 chr3 183051090 183051189 -34985969 + L2 LINE L2 3162 3272 0 1564 130 32 0 chr3 183051264 183051517 -34985641 + L1PA16 LINE L1 5904 6164 -2 433 182 11 0 chr3 183051594 183051682 -34985476 + MLT1L LTR MaLR 525 613 -2 337 203 14 0 chr3 183052714 183052783 -34984375 - L3 LINE CR1 -184 1393 1324 351 0 0 0 chr3 183054045 183054084 -34983074 + (CA)n Simple_repeat Simple_repeat 1 39 0 3721 185 27 17 chr3 183055776 183056480 -34980678 + MER50 LTR ERV1 1 711 -23 1597 215 25 80 chr3 183056506 183056934 -34980224 + MLT2D LTR ERVL 1 495 -20 618 221 5 111 chr3 183057413 183057559 -34979599 - MER5B DNA MER1_type -8 170 47 2222 117 0 3 chr3 183057559 183057857 -34979301 - AluSg SINE Alu -13 297 1 618 221 5 111 chr3 183057857 183057900 -34979258 - MER5B DNA MER1_type -131 47 1 296 400 7 7 chr3 183057924 183058074 -34979084 + MIR3 SINE MIR 51 200 -8 443 274 126 9 chr3 183058448 183058663 -34978495 - MER113 DNA MER1_type? -72 449 210 1779 119 34 0 chr3 183058690 183058959 -34978199 + Tigger1 DNA MER2_type 2141 2418 0 425 229 26 33 chr3 183058959 183059112 -34978046 + L1M4 LINE L1 2276 2427 -3719 437 297 67 6 chr3 183060173 183060338 -34976820 - MIR SINE MIR -41 221 47 246 105 0 0 chr3 183061325 183061363 -34975795 + (CAT)n Simple_repeat Simple_repeat 1 38 0 2357 105 0 6 chr3 183061398 183061712 -34975446 + AluSx SINE Alu 1 312 0 1779 142 30 36 chr3 183062241 183062544 -34974614 + AluJb SINE Alu 1 301 -11 376 211 24 89 chr3 183063917 183064040 -34973118 - MER5C DNA MER1_type -200 124 10 2237 151 68 55 chr3 183064079 183064537 -34972621 - MLT2C2 LTR ERVL 0 464 1 1168 246 7 18 chr3 183065056 183065341 -34971817 + AluJo SINE Alu 1 282 -30 207 0 0 0 chr3 183065345 183065368 -34971790 + (CCAA)n Simple_repeat Simple_repeat 2 24 0 22 35 0 0 chr3 183065528 183065557 -34971601 + AT_rich Low_complexity Low_complexity 1 29 0 1337 303 25 12 chr3 183066313 183066964 -34970194 - L2 LINE L2 0 3313 2657 612 216 8 0 chr3 183067542 183067676 -34969482 + L1M4 LINE L1 2969 3103 -3043 268 233 52 17 chr3 183067699 183067815 -34969343 + (TATG)n Simple_repeat Simple_repeat 4 123 0 323 127 18 0 chr3 183067848 183067903 -34969255 + MLT2B1 LTR ERVL 464 519 -1 809 97 43 7 chr3 183067972 183068257 -34968901 + (TA)n Simple_repeat Simple_repeat 1 295 0 1223 203 6 76 chr3 183068264 183068634 -34968524 - MLT2B1 LTR ERVL -71 449 3 305 314 8 41 chr3 183068683 183068804 -34968354 - L2 LINE L2 -2 3311 3195 2318 195 121 20 chr3 183069326 183069361 -34967797 - MLT2B3 LTR ERVL 0 554 524 522 0 0 0 chr3 183069361 183069419 -34967739 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 2318 195 121 20 chr3 183069419 183069886 -34967272 - MLT2B3 LTR ERVL -30 524 1 508 306 79 47 chr3 183071943 183072260 -34964898 + HAL1 LINE L1 236 562 -1945 749 160 8 0 chr3 183072271 183072402 -34964756 - MLT1B LTR MaLR -2 388 257 706 291 105 42 chr3 183072444 183072919 -34964239 + HAL1 LINE L1 578 1082 -1425 1762 226 72 40 chr3 183072933 183073432 -34963726 - MLT2B1 LTR ERVL 0 520 6 315 295 96 60 chr3 183073464 183073630 -34963528 + HAL1 LINE L1 1083 1254 -1253 861 261 30 45 chr3 183073640 183074066 -34963092 + HAL1 LINE L1 1325 1744 -763 451 332 168 12 chr3 183074142 183074488 -34962670 - LTR33 LTR ERVL -114 407 8 2237 146 79 15 chr3 183076395 183076874 -34960284 + Tigger3b DNA MER2_type 156 665 -566 947 72 16 0 chr3 183127078 183127203 -34909955 - AluY SINE Alu -184 127 1 247 309 15 0 chr3 183127909 183127977 -34909181 + L2 LINE L2 3245 3313 0 282 333 71 28 chr3 183128000 183128141 -34909017 - MIR SINE MIR -54 154 8 1803 194 38 65 chr3 183128217 183128697 -34908461 - MLT1C LTR MaLR 0 467 1 261 240 13 13 chr3 183128871 183128946 -34908212 + MER103 DNA DNA 18 92 -74 2511 146 19 23 chr3 183129250 183129683 -34907475 - Tigger2a DNA MER2_type -2 432 2 350 109 31 0 chr3 183129965 183130029 -34907129 + T-rich Low_complexity Low_complexity 2 67 0 4113 207 55 7 chr3 183131529 183131625 -34905533 - L1MA9 LINE L1 -38 6274 6184 216 0 0 0 chr3 183131625 183131649 -34905509 + (TG)n Simple_repeat Simple_repeat 1 24 0 4113 207 55 7 chr3 183131649 183132490 -34904668 - L1MA9 LINE L1 -128 6184 5384 234 0 0 0 chr3 183132490 183132516 -34904642 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 342 0 0 0 chr3 183132515 183132553 -34904605 + (GA)n Simple_repeat Simple_repeat 1 38 0 4113 207 55 7 chr3 183132516 183132698 -34904460 - L1MA9 LINE L1 -928 5384 5142 4708 205 69 11 chr3 183132702 183133850 -34903308 + L1MA9 LINE L1 3929 5142 -1004 208 373 62 19 chr3 183133966 183134127 -34903031 + L2 LINE L2 2916 3083 -189 2605 161 2 5 chr3 183134215 183134625 -34902533 - LTR3 LTR ERVK -2 430 22 593 161 85 8 chr3 183134957 183135075 -34902083 + MER33 DNA MER1_type 6 132 -192 39048 79 7 8 chr3 183135086 183141228 -34895930 + L1PA6 LINE L1 11 6149 -5 341 172 151 75 chr3 183141237 183141423 -34895735 + MER33 DNA MER1_type 125 324 0 1925 106 170 0 chr3 183141729 183142040 -34895118 + THE1B LTR MaLR 1 364 0 195 360 144 35 chr3 183142327 183142904 -34894254 - L2 LINE L2 -505 2809 2170 401 299 35 21 chr3 183143331 183143475 -34893683 + MIR3 SINE MIR 10 155 -53 2061 122 10 3 chr3 183143694 183143988 -34893170 - AluSq SINE Alu -16 297 2 23 68 0 0 chr3 183144365 183144409 -34892749 + AT_rich Low_complexity Low_complexity 1 44 0 26 50 0 0 chr3 183144462 183144502 -34892656 + AT_rich Low_complexity Low_complexity 1 40 0 2240 124 0 3 chr3 183145523 183145830 -34891328 - AluSq SINE Alu -7 306 1 287 59 39 0 chr3 183147126 183147177 -34889981 + L1MA3 LINE L1 6253 6305 0 306 254 194 0 chr3 183147317 183147482 -34889676 + MIR SINE MIR 51 247 -15 438 293 130 26 chr3 183148162 183148373 -34888785 - MIR SINE MIR -11 251 15 1551 153 123 50 chr3 183148373 183148772 -34888386 - MSTA LTR MaLR 0 428 1 401 284 154 12 chr3 183148827 183148989 -34888169 + MER5A DNA MER1_type 3 187 -2 25 51 0 0 chr3 183149159 183149198 -34887960 + AT_rich Low_complexity Low_complexity 1 39 0 320 339 126 31 chr3 183149205 183149459 -34887699 - L2 LINE L2 -8 3264 2987 247 163 23 0 chr3 183149538 183149581 -34887577 + MER5B DNA MER1_type 2 45 -133 5236 149 7 25 chr3 183149977 183150329 -34886829 - L1PB4 LINE L1 -7 6149 5792 2309 109 7 77 chr3 183150329 183150399 -34886759 - THE1C LTR MaLR 0 375 302 2210 75 0 0 chr3 183150399 183150667 -34886491 + AluY SINE Alu 1 268 -43 2309 109 7 77 chr3 183150667 183150999 -34886159 - THE1C LTR MaLR -73 302 1 5236 149 7 25 chr3 183150999 183151673 -34885485 - L1PB4 LINE L1 -364 5792 5136 2291 181 14 38 chr3 183151676 183152183 -34884975 - L1PB4 LINE L1 -2018 4128 3634 1611 231 67 19 chr3 183152184 183152958 -34884200 - L1M4 LINE L1 -3129 3017 2200 414 0 0 0 chr3 183152985 183153031 -34884127 + (TG)n Simple_repeat Simple_repeat 2 47 0 9911 163 8 17 chr3 183153037 183154137 -34883021 - L1MA3 LINE L1 -57 6248 5139 2147 135 0 3 chr3 183154137 183154449 -34882709 - AluSq SINE Alu -2 311 1 9911 163 8 17 chr3 183154449 183156276 -34880882 - L1MA3 LINE L1 -1166 5139 3349 1920 156 0 3 chr3 183157965 183158272 -34878886 + AluJb SINE Alu 1 306 -6 337 217 0 0 chr3 183160321 183160381 -34876777 + L2 LINE L2 3254 3313 0 482 308 73 29 chr3 183160807 183161219 -34875939 + L1ME LINE L1 5385 5814 -307 447 260 85 55 chr3 183161372 183161572 -34875586 - LTR16C LTR ERVL -177 314 109 482 299 70 12 chr3 183161748 183161992 -34875166 + L1ME1 LINE L1 67 324 -6072 461 171 65 7 chr3 183161998 183162096 -34875062 + L1MD3 LINE L1 6239 6342 -2 1576 264 21 8 chr3 183162103 183162585 -34874573 + L1ME1 LINE L1 2346 2833 -3382 * 1807 225 28 7 chr3 183162581 183162681 -34874477 + L1ME1 LINE L1 5549 5645 -590 2032 149 7 0 chr3 183162681 183162982 -34874176 - AluSx SINE Alu -9 303 1 1807 225 28 7 chr3 183162982 183163303 -34873855 + L1ME1 LINE L1 5645 5979 -256 1229 248 115 49 chr3 183163586 183164074 -34873084 - MLT2B1 LTR ERVL 0 520 1 7578 158 24 45 chr3 183164074 183165529 -34871629 - ERVL-B1 LTR ERVL -7 5757 4334 413 221 47 0 chr3 183165522 183165608 -34871550 + ERVL LTR ERVL 3589 3678 -2086 * 1454 161 17 0 chr3 183165606 183165842 -34871316 - ERVL-B1 LTR ERVL -3657 2107 1868 8088 213 41 14 chr3 183165847 183167470 -34869688 - ERVL-B1 LTR ERVL -4006 1758 84 1501 241 37 3 chr3 183167470 183167823 -34869335 - MLT1A1 LTR MaLR 0 365 1 8088 213 41 14 chr3 183167823 183167909 -34869249 - ERVL-B1 LTR ERVL -5680 84 2 1098 213 66 31 chr3 183167910 183168197 -34868961 - MLT2B1 LTR ERVL 0 520 224 371 229 12 0 chr3 183168202 183168285 -34868873 - MLT2B1 LTR ERVL -429 86 3 297 359 203 19 chr3 183168285 183168951 -34868207 - L2 LINE L2 -821 2493 1706 335 339 25 77 chr3 183169471 183169796 -34867362 + L2 LINE L2 2600 2907 -407 456 271 82 8 chr3 183169810 183169932 -34867226 + MER91C DNA MER1_type 8 138 -2 196 352 67 29 chr3 183170472 183170577 -34866581 + MIR SINE MIR 83 191 -71 1004 284 109 37 chr3 183171813 183172415 -34864743 - MER115 DNA AcHobo 0 693 6 206 224 20 0 chr3 183172601 183172650 -34864508 + CT-rich Low_complexity Low_complexity 5 54 0 184 320 101 76 chr3 183172883 183172909 -34864249 + L2 LINE L2 1773 1797 -1517 759 207 26 47 chr3 183172909 183173102 -34864056 - MER5A DNA MER1_type 0 189 1 184 320 101 76 chr3 183173102 183173391 -34863767 + L2 LINE L2 1797 2096 -1218 285 29 0 0 chr3 183174760 183174794 -34862364 + (CA)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr3 183175376 183175398 -34861760 + AT_rich Low_complexity Low_complexity 1 22 0 310 283 0 30 chr3 183175455 183175554 -34861604 - MER5B DNA MER1_type -82 96 1 259 306 0 31 chr3 183176776 183176874 -34860284 + L2 LINE L2 3219 3313 0 289 234 57 64 chr3 183176877 183177018 -34860140 - MLT1K LTR MaLR 0 588 449 428 227 114 15 chr3 183177679 183177811 -34859347 - LTR33 LTR ERVL 0 521 377 779 217 133 0 chr3 183177924 183178104 -34859054 + MER20 DNA MER1_type 16 219 0 604 273 51 0 chr3 183178208 183178384 -34858774 - LTR33 LTR ERVL -336 185 1 1723 187 0 0 chr3 183179267 183179561 -34857597 + AluJo SINE Alu 14 307 -5 400 276 77 41 chr3 183179828 183180049 -34857109 - MLT1K LTR MaLR -1 587 359 339 317 28 14 chr3 183180105 183180247 -34856911 - MLT1K LTR MaLR -342 246 103 482 323 70 6 chr3 183180354 183180512 -34856646 - MIR3 SINE MIR -18 190 23 1463 159 0 0 chr3 183181425 183181670 -34855488 - L1MA8 LINE L1 -464 5827 5583 210 71 0 0 chr3 183182051 183182079 -34855079 + (A)n Simple_repeat Simple_repeat 1 28 0 4996 154 32 2 chr3 183182219 183183216 -34853942 - L1PA16 LINE L1 -10 6156 5130 555 178 0 8 chr3 183183210 183183328 -34853830 + L1 LINE L1 4570 4686 -1460 * 360 340 146 21 chr3 183185130 183185465 -34851693 + L2 LINE L2 2882 3258 -55 1425 284 156 39 chr3 183185507 183187412 -34849746 - HAL1 LINE L1 -355 2152 1 895 190 75 0 chr3 183187479 183187653 -34849505 - MER5A DNA MER1_type 0 189 3 194 271 68 0 chr3 183187728 183187787 -34849371 + L2 LINE L2 2992 3054 -218 261 279 0 25 chr3 183187949 183188028 -34849130 + CT-rich Low_complexity Low_complexity 2 78 0 191 369 0 0 chr3 183188407 183188472 -34848686 - MER5C DNA MER1_type -248 76 12 4514 157 65 29 chr3 183188487 183189462 -34847696 - L1MB7 LINE L1 0 6184 5180 5690 145 21 1 chr3 183189688 183190618 -34846540 + Tigger1 DNA MER2_type 1466 2414 -4 4617 172 30 2 chr3 183190620 183191491 -34845667 + L1MB2 LINE L1 5267 6161 -10 21 0 0 0 chr3 183193905 183193926 -34843232 + AT_rich Low_complexity Low_complexity 1 21 0 1876 161 37 0 chr3 183194427 183194725 -34842433 + THE1B LTR MaLR 56 364 0 1769 136 123 6 chr3 183194749 183195073 -34842085 - THE1C LTR MaLR 0 375 14 812 293 55 74 chr3 183196917 183197502 -34839656 - L2 LINE L2 -1 3312 2637 690 161 93 0 chr3 183197502 183197620 -34839538 - FLAM_A SINE Alu 0 133 5 812 293 55 74 chr3 183197620 183197896 -34839262 - L2 LINE L2 -676 2637 2357 185 273 68 23 chr3 183198064 183198152 -34839006 - MER5A DNA MER1_type 0 189 98 * 243 250 0 17 chr3 183198104 183198164 -34838994 + MER5A DNA MER1_type 55 113 -76 2440 205 74 65 chr3 183198553 183199388 -34837770 + L1ME3A LINE L1 5317 6159 -11 466 146 31 31 chr3 183200782 183200878 -34836280 - L1MC1 LINE L1 0 6333 6238 1193 101 34 0 chr3 183201117 183201295 -34835863 + L1PA11 LINE L1 5991 6174 0 805 114 0 0 chr3 183202004 183202118 -34835040 - FLAM_A SINE Alu -9 133 20 186 244 133 74 chr3 183202477 183202612 -34834546 + MIR3 SINE MIR 60 202 -6 311 284 12 0 chr3 183203289 183203370 -34833788 + MIR3 SINE MIR 125 206 -2 219 69 0 0 chr3 183204850 183204879 -34832279 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 22 0 0 0 chr3 183205521 183205543 -34831615 + AT_rich Low_complexity Low_complexity 1 22 0 2060 117 14 0 chr3 183205969 183206288 -34830870 - AluSq SINE Alu 0 323 1 2268 107 0 0 chr3 183207267 183207577 -34829581 + AluY SINE Alu 1 310 -1 279 305 68 17 chr3 183208354 183208472 -34828686 + MIR SINE MIR 16 139 -69 186 274 78 0 chr3 183208482 183208533 -34828625 + L2 LINE L2 3210 3264 -8 274 365 176 0 chr3 183209462 183209632 -34827526 - MIR SINE MIR -34 228 29 22 35 0 0 chr3 183209825 183209854 -34827304 + AT_rich Low_complexity Low_complexity 1 29 0 249 341 67 39 chr3 183210327 183210506 -34826652 + L2 LINE L2 3087 3270 -2 352 274 46 91 chr3 183210610 183210829 -34826329 - L2 LINE L2 -1 3312 3104 1428 243 107 45 chr3 183211002 183211508 -34825650 + MLT1F LTR MaLR 1 537 -5 382 329 95 19 chr3 183211517 183211675 -34825483 - L2 LINE L2 -259 3054 2885 271 331 59 44 chr3 183211745 183211881 -34825277 - L2 LINE L2 -579 2735 2598 21 0 0 0 chr3 183212286 183212307 -34824851 + AT_rich Low_complexity Low_complexity 1 21 0 2608 7 0 7 chr3 183212444 183212730 -34824428 - AluYa5 SINE Alu -5 306 23 253 140 35 0 chr3 183213092 183213149 -34824009 + (CATA)n Simple_repeat Simple_repeat 4 62 0 180 26 26 51 chr3 183213489 183213528 -34823630 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2219 79 4 4 chr3 183213566 183213843 -34823315 + AluSc SINE Alu 1 277 -32 261 0 0 0 chr3 183213843 183213872 -34823286 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 267 116 0 23 chr3 183214451 183214494 -34822664 + MLT1H LTR MaLR 146 187 -362 225 0 0 0 chr3 183215126 183215151 -34822007 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr3 183215372 183215395 -34821763 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr3 183215894 183215926 -34821232 + AT_rich Low_complexity Low_complexity 1 32 0 1314 235 101 21 chr3 183216331 183216718 -34820440 + L1ME3A LINE L1 5739 6156 -14 21 71 0 0 chr3 183216944 183216986 -34820172 + AT_rich Low_complexity Low_complexity 1 42 0 193 238 63 63 chr3 183217323 183217386 -34819772 + MIR SINE MIR 43 105 -103 719 179 156 42 chr3 183217467 183217679 -34819479 - Charlie5 DNA MER1_type -2376 236 1 231 349 0 0 chr3 183217683 183217749 -34819409 + MIR3 SINE MIR 97 162 -46 560 310 88 21 chr3 183217756 183218040 -34819118 - MER102b DNA MER1_type -9 332 30 258 314 48 26 chr3 183218730 183218935 -34818223 + MIR3 SINE MIR 14 222 -40 278 259 0 25 chr3 183220786 183220867 -34816291 + MIR SINE MIR 180 258 -4 395 257 3 74 chr3 183220934 183221128 -34816030 + MLT1F1 LTR MaLR 1 226 -369 1829 149 140 9 chr3 183221183 183221526 -34815632 + MSTA LTR MaLR 41 428 0 1013 244 163 19 chr3 183221526 183221843 -34815315 + MLT1F1 LTR MaLR 205 567 0 262 153 85 0 chr3 183221849 183221908 -34815250 + MLT1F1-int LTR MaLR 15 78 -1293 857 235 0 6 chr3 183222132 183222315 -34814843 + MLT1F1-int LTR MaLR 420 601 -770 446 317 18 12 chr3 183222554 183222718 -34814440 + MLT1F1-int LTR MaLR 698 862 -509 527 268 13 94 chr3 183222870 183223094 -34814064 + MLT1F1-int LTR MaLR 982 1187 -184 25 31 0 0 chr3 183223206 183223238 -34813920 + AT_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr3 183223289 183223315 -34813843 + AT_rich Low_complexity Low_complexity 1 26 0 27 0 0 0 chr3 183223375 183223402 -34813756 + AT_rich Low_complexity Low_complexity 1 27 0 211 258 194 0 chr3 183224086 183224179 -34812979 + MIR SINE MIR 32 142 -66 690 216 111 63 chr3 183224213 183224671 -34812487 + MER113 DNA MER1_type? 7 486 -35 385 273 180 0 chr3 183224878 183225050 -34812108 + MIR SINE MIR 50 252 -10 318 296 79 11 chr3 183225582 183225772 -34811386 - MIR SINE MIR -53 209 4 613 282 28 28 chr3 183226587 183226800 -34810358 - MIR SINE MIR -41 221 9 2192 124 3 0 chr3 183226918 183227224 -34809934 - AluSx SINE Alu -5 307 1 5110 141 34 2 chr3 183227355 183228301 -34808857 + L1PB4 LINE L1 5156 6133 -23 490 233 18 61 chr3 183228823 183228986 -34808172 - MIR SINE MIR -1 261 106 658 149 196 7 chr3 183229126 183229274 -34807884 - MER5B DNA MER1_type -2 176 1 295 296 82 10 chr3 183230519 183230617 -34806541 - L2 LINE L2 -9 3263 3159 24 0 0 0 chr3 183232602 183232626 -34804532 + GC_rich Low_complexity Low_complexity 1 24 0 288 0 0 0 chr3 183233406 183233438 -34803720 + (TG)n Simple_repeat Simple_repeat 2 33 0 1703 160 0 34 chr3 183234921 183235241 -34801917 + AluJb SINE Alu 1 310 0 35 78 0 0 chr3 183235839 183235916 -34801242 + AT_rich Low_complexity Low_complexity 1 77 0 21 0 0 0 chr3 183236146 183236167 -34800991 + AT_rich Low_complexity Low_complexity 1 21 0 2412 57 0 0 chr3 183236833 183237150 -34800008 + AluSc SINE Alu 1 317 0 234 0 0 0 chr3 183237906 183237932 -34799226 + (A)n Simple_repeat Simple_repeat 1 26 0 186 133 0 0 chr3 183238159 183238189 -34798969 + (TTCC)n Simple_repeat Simple_repeat 4 33 0 322 352 16 0 chr3 183238189 183238317 -34798841 + CT-rich Low_complexity Low_complexity 2 131 0 777 316 126 50 chr3 183238611 183239483 -34797675 - L2 LINE L2 -512 2802 1865 1340 193 38 4 chr3 183241107 183241345 -34795813 - AluJo SINE Alu -30 282 37 2324 101 0 0 chr3 183241556 183241853 -34795305 + AluSg SINE Alu 1 297 -13 1009 236 67 20 chr3 183241991 183242245 -34794913 - L3 LINE CR1 -570 1007 742 343 279 178 18 chr3 183242417 183242636 -34794522 - MLT1K LTR MaLR 0 588 335 440 252 47 0 chr3 183242738 183242845 -34794313 + MER81 DNA DNA 1 112 -2 295 328 42 8 chr3 183242991 183243110 -34794048 + MER5A DNA MER1_type 67 189 0 218 295 26 96 chr3 183243276 183243432 -34793726 - L3 LINE CR1 -1229 348 204 555 300 73 24 chr3 183243500 183243747 -34793411 + MIR SINE MIR 2 260 -2 198 230 50 80 chr3 183243726 183243826 -34793332 - L3 LINE CR1 -876 701 605 * 226 379 113 28 chr3 183244023 183244387 -34792771 - L2 LINE L2 -341 2973 2579 1237 190 198 0 chr3 183244396 183244664 -34792494 + Tigger4(Zombi) DNA MER2_type 1 321 -2410 * 1277 156 0 0 chr3 183244660 183244865 -34792293 + Tigger4(Zombi) DNA MER2_type 2527 2731 0 367 344 95 28 chr3 183244898 183245183 -34791975 - L2 LINE L2 -787 2527 2224 24 0 0 0 chr3 183245580 183245604 -34791554 + AT_rich Low_complexity Low_complexity 1 24 0 270 299 0 0 chr3 183246053 183246120 -34791038 - L2 LINE L2 -1 3271 3205 1421 187 19 6 chr3 183247340 183247655 -34789503 + L1MC3 LINE L1 7467 7785 0 1894 131 0 3 chr3 183248053 183248367 -34788791 + AluSx SINE Alu 1 313 0 3830 164 81 32 chr3 183248429 183249266 -34787892 - L1MD2 LINE L1 -197 6422 5545 321 218 0 109 chr3 183249266 183249367 -34787791 + L1MC4 LINE L1 6614 6703 -1339 * 330 226 60 0 chr3 183249292 183249376 -34787782 - L1MC4 LINE L1 -1339 6703 6615 5065 240 57 75 chr3 183249395 183250325 -34786833 - L1MD2 LINE L1 -885 5521 4576 1934 188 81 5 chr3 183250325 183250719 -34786439 - MSTB LTR MaLR -2 424 1 5065 240 57 75 chr3 183250719 183251572 -34785586 - L1MD2 LINE L1 -1830 4576 3710 2472 82 3 0 chr3 183251572 183251877 -34785281 - AluSp SINE Alu -7 306 1 5065 240 57 75 chr3 183251877 183252297 -34784861 - L1MD2 LINE L1 -2696 3710 3358 1573 110 20 0 chr3 183252297 183252552 -34784606 - L1MA2 LINE L1 0 6304 6045 5065 240 57 75 chr3 183252552 183252705 -34784453 - L1MD2 LINE L1 -3048 3358 3204 1680 240 93 17 chr3 183252726 183253454 -34783704 - L1MD2 LINE L1 -5512 897 3 * 1962 229 134 22 chr3 183253447 183253532 -34783626 - L1M4 LINE L1 -952 5194 5120 2464 139 46 7 chr3 183253532 183253942 -34783216 - MSTA LTR MaLR 0 428 3 9426 164 24 1 chr3 183253942 183255555 -34781603 - MSTA-int LTR MaLR 0 1651 1 2593 131 41 5 chr3 183255555 183255968 -34781190 - MSTA LTR MaLR 0 428 1 1962 229 134 22 chr3 183255968 183256606 -34780552 - L1M4 LINE L1 -1025 5121 4388 23 92 0 0 chr3 183256651 183256716 -34780442 + AT_rich Low_complexity Low_complexity 1 65 0 870 251 105 3 chr3 183256716 183257263 -34779895 - L1M4 LINE L1 -2001 4145 3510 2231 64 18 7 chr3 183257882 183258206 -34778952 - AluY SINE Alu 0 327 1 21 36 0 0 chr3 183258601 183258629 -34778529 + AT_rich Low_complexity Low_complexity 1 28 0 238 320 64 47 chr3 183258785 183258957 -34778201 + L2 LINE L2 1752 1926 -1388 271 239 0 109 chr3 183259533 183259625 -34777533 - MER91B DNA MER1_type -103 87 6 270 187 104 60 chr3 183260285 183260419 -34776739 - L1ME4a LINE L1 -165 5956 5817 249 319 17 17 chr3 183260566 183260682 -34776476 - L1ME4a LINE L1 -458 5663 5548 201 344 118 21 chr3 183260714 183260993 -34776165 + L3 LINE CR1 404 709 -868 338 311 75 9 chr3 183261040 183261146 -34776012 + MIR SINE MIR 8 120 -142 29 47 0 0 chr3 183261252 183261295 -34775863 + AT_rich Low_complexity Low_complexity 1 43 0 263 342 17 8 chr3 183261394 183261514 -34775644 + MIR SINE MIR 141 261 -1 651 320 81 47 chr3 183261690 183262133 -34775025 + L3 LINE CR1 936 1393 -184 21 0 0 0 chr3 183262855 183262876 -34774282 + AT_rich Low_complexity Low_complexity 1 21 0 2075 100 59 0 chr3 183262952 183263241 -34773917 + AluSc SINE Alu 1 306 -3 1089 232 14 0 chr3 183263265 183263485 -34773673 - MER58A DNA MER1_type -1 223 1 30 45 0 0 chr3 183263689 183263733 -34773425 + AT_rich Low_complexity Low_complexity 1 44 0 732 231 0 46 chr3 183264049 183264222 -34772936 - FRAM SINE Alu -1 165 1 417 225 95 12 chr3 183264330 183264499 -34772659 + MER113 DNA MER1_type? 6 188 -333 1572 182 3 3 chr3 183266471 183266757 -34770401 + L1MB5 LINE L1 5881 6166 -8 241 261 31 15 chr3 183266816 183266881 -34770277 + Charlie8 DNA MER1_type 175 240 -2177 1310 246 82 80 chr3 183267661 183268211 -34768947 + MER77 LTR ERV1 41 591 -14 234 316 117 24 chr3 183269174 183269380 -34767778 - MER89 LTR ERV1 -66 493 269 302 291 157 27 chr3 183269620 183269843 -34767315 + L2 LINE L2 2817 3068 -245 661 243 29 50 chr3 183270190 183270429 -34766729 - HAL1 LINE L1 -861 1646 1413 1317 176 42 0 chr3 183270438 183270700 -34766458 - L1MB3 LINE L1 -3 6180 5908 365 323 92 12 chr3 183270716 183270880 -34766278 + L2 LINE L2 3121 3297 -16 1100 171 84 70 chr3 183271383 183271670 -34765488 - MER58B DNA MER1_type -42 299 9 497 303 15 0 chr3 183272298 183272430 -34764728 - MIR SINE MIR -123 139 6 202 189 0 0 chr3 183272692 183272729 -34764429 + (CA)n Simple_repeat Simple_repeat 2 38 0 200 260 143 0 chr3 183273448 183273525 -34763633 - MIR SINE MIR -56 206 119 353 327 171 24 chr3 183273747 183273952 -34763206 - MIR SINE MIR -8 254 20 2467 71 0 0 chr3 183274006 183274317 -34762841 - AluY SINE Alu 0 311 1 275 378 44 15 chr3 183275400 183275604 -34761554 + MIR SINE MIR 53 262 0 275 346 44 39 chr3 183275979 183276161 -34760997 - MER5A DNA MER1_type 0 189 7 27 0 0 0 chr3 183276161 183276188 -34760970 + AT_rich Low_complexity Low_complexity 1 27 0 2145 121 0 10 chr3 183276430 183276727 -34760431 + AluSc SINE Alu 1 294 -15 213 163 82 0 chr3 183276815 183276864 -34760294 + CT-rich Low_complexity Low_complexity 2 54 0 244 298 218 24 chr3 183277304 183277428 -34759730 + MIR SINE MIR 81 228 -34 1208 184 5 14 chr3 183278275 183278487 -34758671 + AluJb SINE Alu 5 214 -98 2178 164 102 19 chr3 183278487 183280406 -34756752 - SATR1 Satellite Satellite 0 2078 1 2416 182 198 31 chr3 183280436 183285750 -34751408 - SATR1 Satellite Satellite -53 6199 1 1703 162 7 37 chr3 183285976 183286273 -34750885 - AluJb SINE Alu -24 288 1 249 227 41 93 chr3 183287068 183287165 -34749993 + MIR SINE MIR 97 188 -74 715 50 30 0 chr3 183287573 183287674 -34749484 - AluSg/x SINE Alu -8 304 201 298 128 0 0 chr3 183287676 183287723 -34749435 - SATR1 Satellite Satellite -422 48 2 1361 98 0 0 chr3 183287871 183288044 -34749114 - AluY SINE Alu -138 173 1 180 97 0 0 chr3 183288047 183288078 -34749080 + (T)n Simple_repeat Simple_repeat 1 31 0 22 35 0 0 chr3 183288390 183288419 -34748739 + AT_rich Low_complexity Low_complexity 1 29 0 453 305 54 20 chr3 183288767 183288970 -34748188 - MIR SINE MIR -48 214 5 383 290 0 11 chr3 183289189 183289282 -34747876 - L2 LINE L2 -43 3270 3179 6891 102 6 22 chr3 183289386 183290461 -34746697 - MER11C LTR ERVK -14 1057 1 744 329 128 13 chr3 183290528 183291119 -34746039 - L2 LINE L2 -251 3021 2375 486 49 0 0 chr3 183291953 183292014 -34745144 + (GA)n Simple_repeat Simple_repeat 2 62 0 205 88 29 0 chr3 183294360 183294394 -34742764 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2259 112 3 0 chr3 183294957 183295269 -34741889 - AluSq SINE Alu 0 313 1 268 299 58 73 chr3 183295567 183295962 -34741196 - MLT1J LTR MaLR -33 478 90 24 32 0 0 chr3 183296218 183296249 -34740909 + AT_rich Low_complexity Low_complexity 1 31 0 300 267 152 47 chr3 183296401 183296592 -34740566 + MIR SINE MIR 8 218 -44 277 256 87 66 chr3 183296645 183296801 -34740357 + MIR SINE MIR 30 191 -64 858 166 114 24 chr3 183297106 183297317 -34739841 + MSTA LTR MaLR 198 427 -1 2440 224 5 5 chr3 183297504 183298110 -34739048 - L1 LINE L1 -3005 4560 3955 233 254 0 17 chr3 183298110 183298169 -34738989 - L1 LINE L1 -7500 65 8 3483 249 17 95 chr3 183298169 183299336 -34737822 - L1PA15-16 LINE L1 -3929 2920 1664 1893 164 141 5 chr3 183299336 183299713 -34737445 + MSTA LTR MaLR 1 428 0 9696 161 19 2 chr3 183299713 183301336 -34735822 + MSTA-int LTR MaLR 1 1651 0 2068 149 123 5 chr3 183301336 183301719 -34735439 + MSTA LTR MaLR 1 428 0 3483 249 17 95 chr3 183301719 183302335 -34734823 - L1PA15-16 LINE L1 -5182 1667 1273 266 270 11 0 chr3 183302368 183302457 -34734701 - L1PA15-16 LINE L1 -5352 1498 1409 21 0 0 0 chr3 183302796 183302817 -34734341 + GC_rich Low_complexity Low_complexity 1 21 0 545 322 4 31 chr3 183303435 183303696 -34733462 + MLT1K LTR MaLR 335 588 0 430 279 100 30 chr3 183306563 183306729 -34730429 + MIR3 SINE MIR 25 199 -9 2637 69 3 0 chr3 183306835 183307182 -34729976 - L1PA14 LINE L1 -3 6158 5811 1679 183 3 17 chr3 183307267 183307567 -34729591 - AluJb SINE Alu -15 297 2 22 56 0 0 chr3 183308066 183308102 -34729056 + AT_rich Low_complexity Low_complexity 1 36 0 207 0 0 0 chr3 183308489 183308512 -34728646 + (A)n Simple_repeat Simple_repeat 1 23 0 234 0 0 0 chr3 183308571 183308597 -34728561 + (T)n Simple_repeat Simple_repeat 1 26 0 24 0 0 0 chr3 183308721 183308745 -34728413 + GC_rich Low_complexity Low_complexity 1 24 0 360 254 123 51 chr3 183308788 183309051 -34728107 - L1M2 LINE L1 -5816 1033 678 21 0 0 0 chr3 183309109 183309130 -34728028 + GC_rich Low_complexity Low_complexity 1 21 0 706 289 39 14 chr3 183310696 183310976 -34726182 + LTR40b LTR ERVL 138 424 -38 234 322 0 11 chr3 183311279 183311366 -34725792 + T-rich Low_complexity Low_complexity 4 89 0 408 276 28 21 chr3 183311418 183311563 -34725595 - L2 LINE L2 -1 3312 3167 376 355 0 41 chr3 183314432 183314553 -34722605 - L1M2 LINE L1 -5933 916 801 560 346 30 52 chr3 183314697 183315368 -34721790 - L1PA15-16 LINE L1 -6122 727 72 493 302 33 28 chr3 183315472 183315654 -34721504 + MER5A DNA MER1_type 7 189 0 2088 82 61 3 chr3 183318509 183318803 -34718355 - AluY SINE Alu 0 311 1 22 0 0 0 chr3 183420498 183420520 -34616638 + AT_rich Low_complexity Low_complexity 1 22 0 489 362 35 0 chr3 183420599 183420856 -34616302 + L3b LINE CR1 1158 1423 -160 185 276 17 17 chr3 183422771 183422829 -34614329 - L2 LINE L2 -4 3268 3211 208 363 29 0 chr3 183427135 183427237 -34609921 + MIR SINE MIR 77 181 -81 202 239 0 0 chr3 183427252 183427298 -34609860 + (TA)n Simple_repeat Simple_repeat 2 47 0 198 0 0 0 chr3 183427299 183427321 -34609837 + (TG)n Simple_repeat Simple_repeat 1 22 0 311 137 0 0 chr3 183428468 183428519 -34608639 - AluJo SINE Alu -10 292 242 991 179 0 0 chr3 183428521 183428672 -34608486 - AluJo SINE Alu -161 151 1 213 429 38 0 chr3 183428732 183428837 -34608321 - L2 LINE L2 -8 3264 3156 413 167 30 45 chr3 183429063 183429195 -34607963 + Charlie7 DNA MER1_type 2481 2610 -2 204 125 0 0 chr3 183429307 183429339 -34607819 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 1790 183 7 3 chr3 183430074 183430364 -34606794 - AluJb SINE Alu -21 291 1 435 238 30 0 chr3 183430683 183430784 -34606374 - MER5A DNA MER1_type -77 112 9 213 323 0 0 chr3 183433800 183433862 -34603296 - L2 LINE L2 -2 3311 3250 333 0 0 0 chr3 183434858 183434895 -34602263 + (TG)n Simple_repeat Simple_repeat 2 38 0 2269 101 0 3 chr3 183435317 183435623 -34601535 - AluSx SINE Alu -7 305 1 859 180 88 21 chr3 183437038 183437232 -34599926 + MER3 DNA MER1_type 2 208 -1 319 164 16 0 chr3 183437190 183437251 -34599907 - MER3 DNA MER1_type -119 90 29 * 2395 96 0 0 chr3 183437681 183437983 -34599175 + AluSx SINE Alu 1 302 -10 23 0 0 0 chr3 183439364 183439387 -34597771 + AT_rich Low_complexity Low_complexity 1 23 0 1808 70 12 0 chr3 183440127 183440369 -34596789 - L1PA6 LINE L1 -3 6151 5907 25 31 0 0 chr3 183441444 183441476 -34595682 + AT_rich Low_complexity Low_complexity 1 32 0 183 114 0 0 chr3 183441486 183441521 -34595637 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 216 0 0 0 chr3 183441901 183441925 -34595233 + (CA)n Simple_repeat Simple_repeat 2 25 0 379 309 41 0 chr3 183444448 183444571 -34592587 - MIR3 SINE MIR -37 171 44 634 265 148 45 chr3 183444595 183444954 -34592204 - MLT1J LTR MaLR -13 498 103 290 164 0 16 chr3 183444956 183445017 -34592141 + CT-rich Low_complexity Low_complexity 4 63 0 301 271 75 19 chr3 183447258 183447365 -34589793 + MIR3 SINE MIR 91 203 -5 22 0 0 0 chr3 183448046 183448068 -34589090 + AT_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chr3 183448350 183448376 -34588782 + (TG)n Simple_repeat Simple_repeat 1 26 0 2438 71 0 0 chr3 183448469 183448766 -34588392 + AluY SINE Alu 1 297 -14 459 0 0 0 chr3 183448767 183448818 -34588340 + (TA)n Simple_repeat Simple_repeat 2 52 0 373 240 148 45 chr3 183449091 183449367 -34587791 - MLT1J1 LTR MaLR 0 446 114 289 250 185 11 chr3 183449507 183449599 -34587559 - L2 LINE L2 -209 3063 2956 380 264 0 27 chr3 183449765 183449875 -34587283 + L2 LINE L2 3193 3299 -14 409 96 14 14 chr3 183450105 183450178 -34586980 + (TTC)n Simple_repeat Simple_repeat 3 75 0 2332 88 0 7 chr3 183450180 183450476 -34586682 - AluSq SINE Alu -16 297 4 23 86 0 0 chr3 183450628 183450686 -34586472 + AT_rich Low_complexity Low_complexity 1 58 0 767 254 143 5 chr3 183451837 183452054 -34585104 - MIR SINE MIR -1 261 15 1533 159 28 28 chr3 183452161 183452450 -34584708 - AluJo SINE Alu -23 289 1 281 264 44 22 chr3 183452925 183453016 -34584142 + MIR SINE MIR 114 206 -56 408 239 53 18 chr3 183453468 183453581 -34583577 + MIR3 SINE MIR 85 201 -7 2031 145 3 0 chr3 183453646 183453956 -34583202 - AluSx SINE Alu -1 311 1 21 36 0 0 chr3 183454771 183454799 -34582359 + AT_rich Low_complexity Low_complexity 1 28 0 279 246 164 0 chr3 183454985 183455095 -34582063 + MIR3 SINE MIR 35 162 -46 317 189 316 0 chr3 183457383 183457478 -34579680 + L2 LINE L2 3189 3313 0 51 51 0 0 chr3 183459324 183459403 -34577755 + AT_rich Low_complexity Low_complexity 1 79 0 1581 195 19 59 chr3 183462921 183463295 -34573863 - MLT1B LTR MaLR 0 390 32 490 295 65 15 chr3 183463779 183463996 -34573162 - MIR SINE MIR 0 262 34 2324 90 7 0 chr3 183464291 183464592 -34572566 + AluSp SINE Alu 1 303 -10 2208 86 28 0 chr3 183465079 183465370 -34571788 + AluSg SINE Alu 1 299 -11 30 69 0 0 chr3 183466338 183466396 -34570762 + AT_rich Low_complexity Low_complexity 1 58 0 24 0 0 0 chr3 183470823 183470847 -34566311 + AT_rich Low_complexity Low_complexity 1 24 0 963 210 0 17 chr3 183471401 183471577 -34565581 - AluJb SINE Alu -54 258 86 297 118 0 0 chr3 183472133 183472184 -34564974 + (CA)n Simple_repeat Simple_repeat 2 52 0 622 181 121 0 chr3 183472580 183472719 -34564439 - FLAM_C SINE Alu 0 153 1 24 0 0 0 chr3 183474510 183474534 -34562624 + AT_rich Low_complexity Low_complexity 1 24 0 28 29 0 0 chr3 183474665 183474700 -34562458 + AT_rich Low_complexity Low_complexity 1 35 0 200 162 0 0 chr3 183475122 183475159 -34561999 - L2 LINE L2 -22 3250 3214 24 53 0 0 chr3 183476458 183476496 -34560662 + AT_rich Low_complexity Low_complexity 1 38 0 1998 126 4 0 chr3 183476632 183476909 -34560249 + AluSq SINE Alu 1 278 -35 1011 306 117 27 chr3 183476935 183477524 -34559634 + L2 LINE L2 1986 2627 -687 1415 188 88 0 chr3 183477565 183477826 -34559332 + AluJb SINE Alu 24 307 -5 230 426 28 0 chr3 183478048 183478264 -34558894 + L2 LINE L2 2755 2976 -338 351 336 50 7 chr3 183478382 183478522 -34558636 + L2 LINE L2 3168 3313 0 481 284 74 11 chr3 183479963 183480139 -34557019 + MIR3 SINE MIR 19 205 -3 322 237 108 11 chr3 183480468 183480561 -34556597 - L2 LINE L2 -3 3269 3168 270 242 15 0 chr3 183480588 183480654 -34556504 + MER116 DNA Mariner 14 80 0 3972 275 95 28 chr3 183482152 183482598 -34554560 - L2 LINE L2 -374 2940 2526 2472 45 0 32 chr3 183482598 183482910 -34554248 - AluY SINE Alu -9 302 1 3972 275 95 28 chr3 183482910 183484019 -34553139 - L2 LINE L2 -788 2526 1280 327 245 20 48 chr3 183484806 183484953 -34552205 + GA-rich Low_complexity Low_complexity 3 145 0 392 287 178 6 chr3 183485167 183485341 -34551817 - MIR SINE MIR -11 251 48 1858 168 0 7 chr3 183486794 183487085 -34550073 - AluJb SINE Alu -23 289 1 2670 94 10 3 chr3 183487966 183488358 -34548800 + L1P LINE L1 4601 4995 -1151 274 283 80 89 chr3 183488512 183488837 -34548321 + L2 LINE L2 2916 3237 -35 188 270 70 35 chr3 183490138 183490253 -34546905 + MIR SINE MIR 55 173 -89 372 218 153 0 chr3 183490497 183490621 -34546537 + MIR SINE MIR 114 256 -6 2121 122 6 6 chr3 183491744 183492055 -34545103 - AluSx SINE Alu -1 311 1 2113 109 0 3 chr3 183493218 183493511 -34543647 - AluSg SINE Alu -18 292 1 190 302 94 19 chr3 183493717 183493823 -34543335 + MIR SINE MIR 20 133 -129 358 293 75 0 chr3 183494409 183494515 -34542643 - MER94 DNA DNA 0 134 21 425 269 94 12 chr3 183494635 183494795 -34542363 + L2 LINE L2 1750 1922 -1392 441 219 130 0 chr3 183494956 183495079 -34542079 - MIR SINE MIR -66 196 58 3390 92 6 24 chr3 183495208 183495482 -34541676 - L1PA8 LINE L1 -218 5954 5692 2292 98 3 0 chr3 183495482 183495778 -34541380 - AluSx SINE Alu -15 297 1 3390 92 6 24 chr3 183495778 183496004 -34541154 - L1PA8 LINE L1 -480 5692 5463 366 276 47 57 chr3 183497498 183497690 -34539468 - MIR SINE MIR -45 217 28 2053 44 0 0 chr3 183498165 183498414 -34538744 - L1PA4 LINE L1 -2 6153 5905 30 27 0 0 chr3 183498962 183498999 -34538159 + AT_rich Low_complexity Low_complexity 1 37 0 684 289 126 53 chr3 183499260 183499672 -34537486 - L3 LINE CR1 -506 1071 630 25 31 0 0 chr3 183500186 183500218 -34536940 + AT_rich Low_complexity Low_complexity 1 32 0 887 58 16 0 chr3 183500846 183500967 -34536191 + (TTTC)n Simple_repeat Simple_repeat 3 125 0 28 0 0 0 chr3 183501455 183501483 -34535675 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 183502826 183502854 -34534304 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr3 183503084 183503127 -34534031 + AT_rich Low_complexity Low_complexity 1 43 0 596 149 0 9 chr3 183503277 183503391 -34533767 + (TTCC)n Simple_repeat Simple_repeat 3 115 0 22 0 0 0 chr3 183503501 183503523 -34533635 + AT_rich Low_complexity Low_complexity 1 22 0 582 271 32 0 chr3 183503852 183504003 -34533155 - MER5B DNA MER1_type -3 186 16 2455 133 2 10 chr3 183507345 183507743 -34529415 + L1PA15 LINE L1 5768 6162 -3 258 32 0 0 chr3 183507748 183507779 -34529379 + (TAAAA)n Simple_repeat Simple_repeat 3 33 0 212 311 40 27 chr3 183509100 183509174 -34527984 - L2 LINE L2 -15 3298 3224 910 220 0 0 chr3 183509810 183509987 -34527171 - FRAM SINE Alu 0 176 1 25 0 0 0 chr3 183510807 183510832 -34526326 + AT_rich Low_complexity Low_complexity 1 25 0 243 0 0 0 chr3 183511666 183511693 -34525465 + (TG)n Simple_repeat Simple_repeat 2 28 0 198 0 0 0 chr3 183513289 183513311 -34523847 + (A)n Simple_repeat Simple_repeat 1 22 0 409 289 24 62 chr3 183513783 183513991 -34523167 + MIR SINE MIR 6 205 -57 641 294 82 22 chr3 183516270 183516586 -34520572 + MER102b DNA MER1_type 1 335 -6 459 264 28 51 chr3 183516884 183516939 -34520219 + MER5B DNA MER1_type 5 60 -118 2202 113 3 3 chr3 183516939 183517241 -34519917 + AluSq SINE Alu 1 302 -11 459 264 28 51 chr3 183517241 183517363 -34519795 + MER5B DNA MER1_type 60 178 0 444 330 86 0 chr3 183518422 183518619 -34518539 - MIR SINE MIR -18 244 31 1119 318 84 21 chr3 183520303 183520816 -34516342 + L3 LINE CR1 936 1480 -97 181 328 0 30 chr3 183521667 183521734 -34515424 - MIR SINE MIR -149 113 49 23 33 0 0 chr3 183522661 183522691 -34514467 + AT_rich Low_complexity Low_complexity 1 30 0 34 24 0 0 chr3 183523548 183523589 -34513569 + AT_rich Low_complexity Low_complexity 1 41 0 2152 134 0 0 chr3 183528249 183528556 -34508602 - AluSg SINE Alu 0 310 4 216 0 0 0 chr3 183528817 183528841 -34508317 + (T)n Simple_repeat Simple_repeat 1 24 0 312 279 81 15 chr3 183528841 183528977 -34508181 - L2 LINE L2 -58 3255 3111 951 90 23 17 chr3 183529468 183529645 -34507513 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 278 260 14 0 chr3 183529645 183529718 -34507440 + CT-rich Low_complexity Low_complexity 4 77 0 347 325 70 6 chr3 183530563 183530720 -34506438 + MIR SINE MIR 23 189 -73 24 0 0 0 chr3 183534728 183534752 -34502406 + AT_rich Low_complexity Low_complexity 1 24 0 2139 127 0 7 chr3 183534755 183535063 -34502095 + AluSg SINE Alu 1 306 -4 1702 191 7 0 chr3 183537426 183537720 -34499438 - AluJb SINE Alu -16 296 1 26 0 0 0 chr3 183537885 183537911 -34499247 + AT_rich Low_complexity Low_complexity 1 26 0 209 208 0 0 chr3 183538267 183538315 -34498843 + (TA)n Simple_repeat Simple_repeat 1 48 0 456 290 59 30 chr3 183538479 183538648 -34498510 - MIR SINE MIR -24 238 65 257 298 153 15 chr3 183538676 183538807 -34498351 + MIR SINE MIR 59 207 -55 2397 64 20 0 chr3 183539973 183540269 -34496889 + AluSc SINE Alu 3 304 -5 195 237 0 0 chr3 183541261 183541299 -34495859 + L2 LINE L2 3262 3299 -14 25 51 0 0 chr3 183541428 183541467 -34495691 + AT_rich Low_complexity Low_complexity 1 39 0 330 26 0 0 chr3 183542244 183542283 -34494875 + (TG)n Simple_repeat Simple_repeat 2 40 0 310 318 15 45 chr3 183542621 183542753 -34494405 + MIR SINE MIR 64 191 -71 21 0 0 0 chr3 183542816 183542837 -34494321 + AT_rich Low_complexity Low_complexity 1 21 0 446 315 214 40 chr3 183543094 183543815 -34493343 + L2 LINE L2 1966 2811 -503 276 288 55 54 chr3 183544962 183545103 -34492055 + MIR SINE MIR 15 155 -63 280 322 11 0 chr3 183545106 183545193 -34491965 - MIR SINE MIR -22 240 153 1858 113 41 16 chr3 183545193 183545551 -34491607 + Tigger4(Zombi) DNA MER2_type 1 2731 0 1066 93 111 98 chr3 183545957 183546182 -34490976 + MER30 DNA MER1_type 1 228 -2 6229 88 31 3 chr3 183546290 183547569 -34489589 + L1PA8 LINE L1 4869 6172 0 1604 233 77 49 chr3 183547873 183548446 -34488712 - L1ME2 LINE L1 -62 6102 5514 209 105 0 26 chr3 183548526 183548564 -34488594 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 1194 306 62 77 chr3 183548692 183549592 -34487566 + L2 LINE L2 1922 2808 -506 288 0 0 0 chr3 183549841 183549873 -34487285 + (TA)n Simple_repeat Simple_repeat 2 33 0 308 320 84 49 chr3 183550327 183550552 -34486606 + L2 LINE L2 3081 3313 0 214 385 31 0 chr3 183550820 183550916 -34486242 - L3b LINE CR1 -63 1520 1422 194 62 31 0 chr3 183551555 183551587 -34485571 + (CTAAA)n Simple_repeat Simple_repeat 4 36 0 299 166 43 7 chr3 183552096 183552235 -34484923 + (TA)n Simple_repeat Simple_repeat 1 144 0 204 267 0 0 chr3 183552507 183552552 -34484606 + T-rich Low_complexity Low_complexity 1 45 0 230 165 58 29 chr3 183554765 183554798 -34482360 + (TA)n Simple_repeat Simple_repeat 1 32 -74 2112 115 3 0 chr3 183554798 183555085 -34482073 + AluSx SINE Alu 1 288 -24 230 165 58 29 chr3 183555085 183555154 -34482004 + (TA)n Simple_repeat Simple_repeat 32 106 0 2256 64 0 3 chr3 183556520 183556827 -34480331 + AluY SINE Alu 1 306 0 277 204 32 21 chr3 183557033 183557126 -34480032 + (TA)n Simple_repeat Simple_repeat 1 94 0 41 87 0 0 chr3 183557216 183557320 -34479838 + AT_rich Low_complexity Low_complexity 1 104 0 481 97 0 0 chr3 183557451 183557523 -34479635 + L1PA8 LINE L1 6095 6166 -6 2091 122 0 10 chr3 183557556 183557868 -34479290 + AluSx SINE Alu 3 311 -1 340 400 19 7 chr3 183557921 183558076 -34479082 + L2 LINE L2 3116 3272 0 386 289 121 26 chr3 183558101 183558291 -34478867 - L2 LINE L2 -397 2917 2710 180 0 0 0 chr3 183560715 183560735 -34476423 + (TA)n Simple_repeat Simple_repeat 2 21 0 23 33 0 0 chr3 183560775 183560805 -34476353 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 183561901 183561922 -34475236 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 183562120 183562143 -34475015 + AT_rich Low_complexity Low_complexity 1 23 0 1618 85 21 0 chr3 183562415 183562650 -34474508 - L1MA1 LINE L1 0 6302 6063 2045 93 4 7 chr3 183562650 183562928 -34474230 - AluSc SINE Alu -10 299 23 1679 139 38 15 chr3 183563037 183563304 -34473854 + AluSx SINE Alu 28 300 -12 199 243 0 0 chr3 183563943 183563980 -34473178 - MIR SINE MIR -87 121 85 942 258 206 39 chr3 183564138 183564767 -34472391 + L2 LINE L2 2580 3311 -2 1726 53 0 0 chr3 183565242 183565450 -34471708 - L1PA6 LINE L1 -152 6002 5795 1954 122 4 0 chr3 183567590 183567861 -34469297 - AluSg SINE Alu -38 272 1 1226 137 2 1 chr3 183568058 183569938 -34467220 + ALR/Alpha Satellite centromeric 1 1881 -3 881 203 7 3 chr3 183569950 183570172 -34466986 + ALR/Alpha Satellite centromeric 1 222 -26 429 233 145 64 chr3 183571777 183571949 -34465209 - MER5A DNA MER1_type 0 189 4 753 164 43 0 chr3 183572045 183572185 -34464973 - MER5A DNA MER1_type 0 189 44 221 333 0 18 chr3 183572630 183572687 -34464471 - L2 LINE L2 -79 3193 3138 287 30 0 0 chr3 183572822 183572855 -34464303 + (CA)n Simple_repeat Simple_repeat 1 33 0 661 340 34 41 chr3 183572973 183573361 -34463797 - L2 LINE L2 -19 3253 2869 1986 169 85 13 chr3 183574742 183575132 -34462026 - MER47B DNA MER2_type 0 418 1 199 215 31 0 chr3 183576577 183576642 -34460516 + CT-rich Low_complexity Low_complexity 2 68 0 210 71 0 0 chr3 183578432 183578460 -34458698 + (TA)n Simple_repeat Simple_repeat 2 29 0 521 291 101 105 chr3 183579360 183579837 -34457321 + L2 LINE L2 2839 3313 0 203 152 0 0 chr3 183579839 183579872 -34457286 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 298 324 179 36 chr3 183583454 183584264 -34452894 - L2 LINE L2 -612 2702 1777 296 373 48 57 chr3 183584694 183584922 -34452236 + L2 LINE L2 2998 3223 -49 357 82 0 0 chr3 183585018 183585067 -34452091 + (GGAA)n Simple_repeat Simple_repeat 3 51 0 289 167 265 39 chr3 183585167 183585269 -34451889 + AluSp/q SINE Alu 179 303 0 701 250 68 54 chr3 183585289 183585411 -34451747 + L2 LINE L2 3014 3133 -180 2180 126 0 0 chr3 183585411 183585713 -34451445 - AluSx SINE Alu -7 305 4 701 250 68 54 chr3 183585713 183585886 -34451272 + L2 LINE L2 3133 3313 0 587 347 58 0 chr3 183585943 183586185 -34450973 + MIR SINE MIR 5 260 -2 307 121 187 44 chr3 183586935 183587026 -34450132 - MER3 DNA MER1_type -27 182 79 729 258 98 29 chr3 183587197 183587441 -34449717 - MIR SINE MIR -1 261 1 804 219 49 29 chr3 183587463 183587668 -34449490 - MER3 DNA MER1_type 0 209 1 557 259 88 34 chr3 183587997 183588202 -34448956 + MIR SINE MIR 9 224 -38 362 290 38 30 chr3 183588534 183588665 -34448493 - MER5A DNA MER1_type -51 138 7 192 97 0 0 chr3 183590589 183590620 -34446538 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 216 296 174 10 chr3 183592280 183592378 -34444780 - MIR SINE MIR -97 165 52 2453 81 0 0 chr3 183592867 183593175 -34443983 + AluY SINE Alu 1 308 -3 429 180 0 0 chr3 183593186 183593275 -34443883 + (TG)n Simple_repeat Simple_repeat 2 90 0 473 330 9 52 chr3 183593874 183594110 -34443048 - MIR SINE MIR -26 236 11 3380 118 7 0 chr3 183595571 183596111 -34441047 - L1P LINE L1 -3172 2974 2431 2080 134 0 3 chr3 183596111 183596403 -34440755 - AluSc SINE Alu -16 293 3 1744 186 0 0 chr3 183596474 183596754 -34440404 - AluSx SINE Alu -32 280 1 1959 191 85 36 chr3 183597494 183598024 -34439134 - L1MA9 LINE L1 -2 6310 5755 407 269 25 6 chr3 183598032 183598192 -34438966 + L1M LINE L1 5254 5416 -928 230 179 0 0 chr3 183599691 183599730 -34437428 - L2 LINE L2 -24 3289 3251 611 239 115 46 chr3 183599795 183600055 -34437103 + L2 LINE L2 3036 3313 0 180 271 21 0 chr3 183600081 183600129 -34437029 + MIR3 SINE MIR 159 207 -1 314 298 226 11 chr3 183600284 183600465 -34436693 + MIR SINE MIR 37 256 -6 325 350 17 0 chr3 183601753 183601870 -34435288 + L2 LINE L2 3194 3312 -1 182 325 12 12 chr3 183604226 183604306 -34432852 - MIR SINE MIR -6 256 177 265 393 30 7 chr3 183604542 183604677 -34432481 - MIR3 SINE MIR -40 168 31 254 195 58 69 chr3 183605028 183605115 -34432043 - MLT1E2 LTR MaLR -73 553 468 435 289 67 0 chr3 183655812 183655947 -34381211 + MIR SINE MIR 114 257 -5 397 280 175 0 chr3 183655960 183656103 -34381055 - MIR SINE MIR -80 182 15 642 166 28 69 chr3 183656127 183656272 -34380886 + MER31B LTR ERV1 252 390 -76 339 286 36 43 chr3 183657309 183657423 -34379735 + MIR SINE MIR 124 238 -24 1556 138 122 62 chr3 183657423 183657777 -34379381 + THE1C LTR MaLR 1 375 0 339 286 36 43 chr3 183657777 183657802 -34379356 + MIR SINE MIR 238 262 0 1086 232 67 46 chr3 183658148 183658519 -34378639 + MLT1B LTR MaLR 1 379 -11 203 322 34 0 chr3 183658976 183659035 -34378123 - MIR SINE MIR -127 81 21 823 273 87 12 chr3 183659187 183659429 -34377729 - MIR SINE MIR -2 260 1 623 319 50 13 chr3 183659608 183659846 -34377312 + MIR SINE MIR 2 248 -14 218 179 26 0 chr3 183659848 183659887 -34377271 + (CCA)n Simple_repeat Simple_repeat 1 40 0 333 294 156 6 chr3 183660391 183660573 -34376585 + MIR SINE MIR 30 238 -24 1949 136 14 0 chr3 183660980 183661267 -34375891 + AluSx SINE Alu 5 295 -17 675 293 48 38 chr3 183661401 183661691 -34375467 + L2 LINE L2 3019 3311 -2 1562 201 44 85 chr3 183662444 183662971 -34374187 + MLT1D LTR MaLR 1 505 0 811 202 45 63 chr3 183664190 183664413 -34372745 - MER20 DNA MER1_type 0 219 1 2140 233 104 56 chr3 183665821 183666204 -34370954 + MER97a DNA MER1_type? 12 375 -519 1951 149 0 7 chr3 183666204 183666500 -34370658 - AluSx SINE Alu -18 294 1 2140 233 104 56 chr3 183666500 183666954 -34370204 + MER97a DNA MER1_type? 375 889 -5 341 303 83 8 chr3 183667759 183667891 -34369267 + MIR SINE MIR 59 200 -62 286 338 29 31 chr3 183668653 183668838 -34368320 + MIR SINE MIR 74 261 -1 1151 242 40 15 chr3 183668930 183669256 -34367902 - L1ME3A LINE L1 0 6170 5837 26 0 0 0 chr3 183669438 183669464 -34367694 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr3 183670257 183670281 -34366877 + AT_rich Low_complexity Low_complexity 1 24 0 803 61 149 0 chr3 183670459 183670573 -34366585 + AluY SINE Alu 157 287 -24 21 0 0 0 chr3 183671155 183671176 -34365982 + AT_rich Low_complexity Low_complexity 1 21 0 37 0 0 0 chr3 183672512 183672549 -34364609 + AT_rich Low_complexity Low_complexity 1 37 0 426 274 159 25 chr3 183673818 183673975 -34363183 - MER5B DNA MER1_type 0 178 1 368 229 0 0 chr3 183674050 183674120 -34363038 - MER5A DNA MER1_type -106 83 14 367 344 39 6 chr3 183674732 183674912 -34362246 - MER5A DNA MER1_type -2 187 2 241 281 16 16 chr3 183674921 183674985 -34362173 - MER5A DNA MER1_type -3 186 123 2095 118 3 10 chr3 183675169 183675482 -34361676 - AluSx SINE Alu -1 311 1 202 227 23 0 chr3 183675535 183675579 -34361579 - MIR3 SINE MIR -13 195 151 367 231 0 0 chr3 183676339 183676417 -34360741 - Charlie1a DNA MER1_type -532 923 846 * 1673 205 25 33 chr3 183676413 183676808 -34360350 - Charlie1a DNA MER1_type -1063 392 1 27 62 0 0 chr3 183677057 183677105 -34360053 + AT_rich Low_complexity Low_complexity 1 48 0 233 289 87 39 chr3 183677108 183677316 -34359842 - L1ME4a LINE L1 -18 6103 5886 40 21 0 0 chr3 183678328 183678375 -34358783 + AT_rich Low_complexity Low_complexity 1 47 0 328 311 75 73 chr3 183678486 183679114 -34358044 + HAL1 LINE L1 1147 1775 -732 251 221 0 13 chr3 183679471 183679548 -34357610 + (TA)n Simple_repeat Simple_repeat 1 76 0 6086 34 1 8 chr3 183679821 183680565 -34356593 - L1PA4 LINE L1 0 6155 5417 1244 265 50 15 chr3 183680156 183680613 -34356545 - L1ME4a LINE L1 -1985 5823 5351 342 0 0 0 chr3 183680930 183680968 -34356190 + (T)n Simple_repeat Simple_repeat 1 38 0 * 1021 53 8 0 chr3 183680962 183681093 -34356065 - AluY SINE Alu -179 132 1 207 0 0 0 chr3 183681368 183681391 -34355767 + (A)n Simple_repeat Simple_repeat 1 23 0 314 300 83 46 chr3 183681520 183681760 -34355398 - Charlie8 DNA MER1_type -2088 329 81 272 271 24 12 chr3 183681775 183681860 -34355298 + MLT1I LTR MaLR 40 125 -284 392 340 102 15 chr3 183681900 183682097 -34355061 + MLT1I LTR MaLR 192 405 -4 234 263 0 59 chr3 183682365 183682517 -34354641 + C-rich Low_complexity Low_complexity 5 147 0 1485 208 0 7 chr3 183683331 183683620 -34353538 + AluJb SINE Alu 1 287 -25 1271 148 162 81 chr3 183683636 183683994 -34353164 - MER101B LTR ERV1 -23 547 161 273 253 13 13 chr3 183684072 183684151 -34353007 + CT-rich Low_complexity Low_complexity 3 81 0 661 186 129 21 chr3 183684198 183684338 -34352820 - MER101B LTR ERV1 -415 155 1 482 271 222 10 chr3 183684366 183684573 -34352585 + MIR SINE MIR 5 255 -7 414 57 0 0 chr3 183684573 183684626 -34352532 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 201 74 0 0 chr3 183684804 183684831 -34352327 + (CTG)n Simple_repeat Simple_repeat 1 27 0 182 158 0 53 chr3 183685683 183685721 -34351437 - L3b LINE CR1 -7 1576 1541 622 361 138 21 chr3 183687651 183688283 -34348875 - L2 LINE L2 -474 2840 2135 2392 171 53 12 chr3 183688425 183688916 -34348242 + L1MB8 LINE L1 5667 6177 -1 222 309 103 52 chr3 183690044 183690180 -34346978 + L2 LINE L2 3129 3271 -1 303 326 99 7 chr3 183690299 183690440 -34346718 - MIR SINE MIR -25 237 84 304 289 106 7 chr3 183691527 183691645 -34345513 - L2 LINE L2 -9 3304 3168 328 268 122 32 chr3 183691645 183691768 -34345390 + MER94 DNA DNA 1 134 0 304 289 106 7 chr3 183691768 183691791 -34345367 - L2 LINE L2 -145 3168 3149 901 234 35 0 chr3 183692054 183692251 -34344907 + MER20 DNA MER1_type 16 219 0 205 304 98 11 chr3 183692528 183692620 -34344538 - L2 LINE L2 -1324 1990 1891 1354 183 77 72 chr3 183693816 183694204 -34342954 - MLT1B LTR MaLR 0 390 1 3639 223 70 73 chr3 183694205 183695579 -34341579 - MLT1B-int LTR MaLR -1 1370 1 1189 226 48 80 chr3 183695579 183695977 -34341181 - MLT1B LTR MaLR 0 390 6 191 275 150 0 chr3 183696171 183696251 -34340907 - MIR3 SINE MIR -18 190 99 366 187 13 0 chr3 183697945 183698030 -34339128 + HsTC2 DNA Tc2 1 86 -1812 428 172 221 0 chr3 183698277 183698399 -34338759 + HsTC2 DNA Tc2 1743 1891 -7 1322 111 10 0 chr3 183699190 183699398 -34337760 + L1MA5A LINE L1 6078 6287 -10 4923 57 0 0 chr3 183699420 183700055 -34337103 - L1P LINE L1 -3970 2176 1542 306 189 98 70 chr3 183700115 183700258 -34336900 + L1MC5 LINE L1 7516 7662 -299 1063 164 46 36 chr3 183700426 183700645 -34336513 - MLT1A1 LTR MaLR 0 365 145 423 0 0 0 chr3 183702831 183702878 -34334280 + (CA)n Simple_repeat Simple_repeat 2 48 0 1736 198 16 25 chr3 183704758 183705121 -34332037 + MLT1A1 LTR MaLR 6 365 0 328 328 68 51 chr3 183706077 183706254 -34330904 + MER91A DNA MER1_type 17 196 0 268 295 95 29 chr3 183706988 183707093 -34330065 + MIR SINE MIR 3 114 -148 394 197 0 0 chr3 183707124 183707200 -34329958 - Charlie1 DNA MER1_type -26 2735 2660 2068 112 0 0 chr3 183707207 183707476 -34329682 - AluSx SINE Alu -43 269 1 2144 105 7 3 chr3 183707515 183707800 -34329358 - AluSc SINE Alu -23 286 1 201 227 23 0 chr3 183707853 183707897 -34329261 - MIR3 SINE MIR -13 195 151 373 269 60 52 chr3 183708564 183708698 -34328460 + MIR SINE MIR 22 156 -106 187 223 21 0 chr3 183708959 183709036 -34328122 + (TA)n Simple_repeat Simple_repeat 2 83 -14 243 0 0 0 chr3 183709036 183709063 -34328095 + (TG)n Simple_repeat Simple_repeat 2 28 0 187 223 21 0 chr3 183709063 183709079 -34328079 + (TA)n Simple_repeat Simple_repeat 83 97 0 888 202 17 77 chr3 183709373 183709606 -34327552 + MER20 DNA MER1_type 1 219 0 753 193 16 72 chr3 183709663 183709912 -34327246 + MER106A DNA MER1_type 1 235 -1 196 30 61 0 chr3 183710085 183710118 -34327040 + T-rich Low_complexity Low_complexity 16 50 0 1362 232 0 18 chr3 183710120 183710404 -34326754 - AluJo SINE Alu -33 279 1 386 302 22 45 chr3 183710716 183710948 -34326210 - L2 LINE L2 0 3313 3049 488 273 46 88 chr3 183711016 183711232 -34325926 - MIR SINE MIR -50 212 6 1348 296 99 22 chr3 183711544 183711635 -34325523 - L1MEc LINE L1 -5678 718 635 3548 149 25 21 chr3 183711635 183712285 -34324873 - MER39B LTR ERV1 0 653 2 1348 296 99 22 chr3 183712285 183712828 -34324330 - L1MEc LINE L1 -5761 635 35 5686 45 26 1 chr3 183712840 183713556 -34323602 - L1PA6 LINE L1 -4 6150 5417 320 374 14 7 chr3 183713979 183714118 -34323040 + Tigger8 DNA MER2_type 9 148 -518 324 261 57 70 chr3 183715034 183715191 -34321967 - L1 LINE L1 -1113 5033 4879 25 95 0 0 chr3 183715816 183715890 -34321268 + AT_rich Low_complexity Low_complexity 1 74 0 338 0 24 0 chr3 183716113 183716155 -34321003 + (TG)n Simple_repeat Simple_repeat 2 44 0 243 342 75 48 chr3 183716155 183716342 -34320816 - MLT1L LTR MaLR -78 537 346 276 228 133 109 chr3 183716393 183716604 -34320554 - MLT1L LTR MaLR -360 255 40 389 314 96 34 chr3 183716679 183717369 -34319789 - L1 LINE L1 -2458 3688 2896 1449 209 3 16 chr3 183718417 183718723 -34318435 - AluJb SINE Alu -10 302 1 2019 101 17 7 chr3 183719981 183720268 -34316890 + AluSc SINE Alu 8 297 -12 226 358 12 12 chr3 183720270 183720351 -34316807 - MIR SINE MIR -162 100 20 301 275 199 0 chr3 183720386 183720517 -34316641 - MIR SINE MIR 0 262 106 205 261 115 62 chr3 183721712 183721842 -34315316 + MIR SINE MIR 72 208 -54 334 236 87 62 chr3 183721843 183722004 -34315154 + L1ME4a LINE L1 5684 5848 -273 22 0 0 0 chr3 183723334 183723356 -34313802 + AT_rich Low_complexity Low_complexity 1 22 0 333 240 0 0 chr3 183723356 183723431 -34313727 + HsTC2 DNA Tc2 8 82 -1816 194 178 356 11 chr3 183723580 183723670 -34313488 - MER5C DNA MER1_type -203 121 1 21 0 0 0 chr3 183723731 183723752 -34313406 + AT_rich Low_complexity Low_complexity 1 21 0 194 127 254 56 chr3 183724512 183724583 -34312575 + L2 LINE L2 3229 3313 0 272 336 98 0 chr3 183725885 183726009 -34311149 - MIR SINE MIR -3 259 118 1599 214 20 50 chr3 183726009 183726410 -34310748 + MLT1B LTR MaLR 1 389 -1 272 336 98 0 chr3 183726410 183726428 -34310730 - MIR SINE MIR -144 118 103 299 277 116 36 chr3 183726917 183727029 -34310129 + L3 LINE CR1 1377 1497 -80 6363 235 53 39 chr3 183727261 183728096 -34309062 - L1ME1 LINE L1 -5 6230 5409 2698 140 21 8 chr3 183728096 183728574 -34308584 - L1MA4 LINE L1 -4 6296 5813 6363 235 53 39 chr3 183728574 183729911 -34307247 - L1ME1 LINE L1 -826 5409 4093 2295 139 3 16 chr3 183729911 183729947 -34307211 + L1PB1 LINE L1 5762 5797 -354 327 49 0 0 chr3 183729947 183729988 -34307170 + (TA)n Simple_repeat Simple_repeat 1 41 0 2295 139 3 16 chr3 183729988 183730338 -34306820 + L1PB1 LINE L1 5797 6143 -8 6363 235 53 39 chr3 183730338 183730431 -34306727 - L1ME1 LINE L1 -2142 4093 4003 2322 94 34 17 chr3 183730431 183730783 -34306375 - L1PA12 LINE L1 0 6168 5811 6363 235 53 39 chr3 183730783 183731293 -34305865 - L1ME1 LINE L1 -2232 4003 3502 2033 124 0 36 chr3 183731293 183731600 -34305558 - AluSq SINE Alu -13 300 5 6363 235 53 39 chr3 183731600 183732262 -34304896 - L1ME1 LINE L1 -2733 3502 2757 1713 282 94 17 chr3 183732260 183732351 -34304807 - L1ME1 LINE L1 -5678 718 635 * 3548 149 25 21 chr3 183732351 183733001 -34304157 - MER39B LTR ERV1 0 653 2 1713 282 94 17 chr3 183733001 183733544 -34303614 - L1ME1 LINE L1 -5761 635 35 4331 57 67 12 chr3 183733556 183734155 -34303003 - L1PA6 LINE L1 -4 6150 5519 2828 96 98 0 chr3 183734228 183734613 -34302545 + LTR46 LTR ERV1 1 432 -28 213 65 0 0 chr3 183734613 183734644 -34302514 + (TG)n Simple_repeat Simple_repeat 2 32 0 2828 96 98 0 chr3 183734644 183734677 -34302481 + LTR46 LTR ERV1 432 460 0 365 297 62 7 chr3 183735707 183735852 -34301306 - MER117 DNA MER1_type -7 190 38 201 74 0 0 chr3 183736238 183736265 -34300893 + (CA)n Simple_repeat Simple_repeat 2 28 0 320 318 19 9 chr3 183736423 183736530 -34300628 + MER5C DNA MER1_type 12 119 -205 19552 161 31 20 chr3 183736565 183738996 -34298162 + L1MA2 LINE L1 14 2417 -5306 577 89 33 0 chr3 183738996 183739086 -34298072 + L1PA5 LINE L1 6062 6154 0 19552 161 31 20 chr3 183739086 183741233 -34295925 + L1MA2 LINE L1 2417 4539 -3184 2299 103 0 3 chr3 183741233 183741545 -34295613 + AluSx SINE Alu 1 311 -1 19552 161 31 20 chr3 183741545 183744587 -34292571 + L1MA2 LINE L1 4539 7717 -6 217 160 20 20 chr3 183744644 183744694 -34292464 + MER5C DNA MER1_type 275 324 0 224 337 11 22 chr3 183744762 183744854 -34292304 + MIR SINE MIR 88 178 -84 749 263 168 29 chr3 183744889 183745270 -34291888 + MLT1J LTR MaLR 77 510 -1 262 239 137 17 chr3 183745752 183745869 -34291289 - L1MC5 LINE L1 -820 7141 7011 21 0 0 0 chr3 183746103 183746124 -34291034 + AT_rich Low_complexity Low_complexity 1 21 0 985 297 64 28 chr3 183746300 183746913 -34290245 + L2 LINE L2 2675 3313 0 1884 191 48 17 chr3 183748057 183748489 -34288669 - MLT1C LTR MaLR 0 467 6 1965 124 17 0 chr3 183748604 183748894 -34288264 - AluSx SINE Alu -17 295 1 212 242 32 0 chr3 183749708 183749770 -34287388 + (TA)n Simple_repeat Simple_repeat 2 65 0 326 292 121 81 chr3 183750283 183750714 -34286444 + L1MEd LINE L1 662 1109 -5010 481 282 45 35 chr3 183750828 183751030 -34286128 - MLT1I LTR MaLR -199 210 7 259 321 66 85 chr3 183751047 183751155 -34286003 + L1M4c LINE L1 1390 1499 -1244 2274 109 0 6 chr3 183751155 183751467 -34285691 + AluSg SINE Alu 1 310 0 259 321 66 85 chr3 183751467 183751887 -34285271 + L1M4c LINE L1 1499 1982 -761 1706 139 26 13 chr3 183751962 183752264 -34284894 - AluSg SINE Alu -4 306 1 2085 233 104 56 chr3 183752905 183753288 -34283870 + MER97a DNA MER1_type? 12 375 -519 1981 149 0 7 chr3 183753288 183753584 -34283574 - AluSx SINE Alu -18 294 1 2085 233 104 56 chr3 183753584 183754038 -34283120 + MER97a DNA MER1_type? 375 889 -5 344 303 83 8 chr3 183754843 183754975 -34282183 + MIR SINE MIR 59 200 -62 281 338 29 31 chr3 183755737 183755922 -34281236 + MIR SINE MIR 74 261 -1 1131 241 40 15 chr3 183756014 183756338 -34280820 - L1ME3A LINE L1 -2 6168 5837 27 0 0 0 chr3 183756520 183756547 -34280611 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr3 183757340 183757364 -34279794 + AT_rich Low_complexity Low_complexity 1 24 0 1212 41 0 0 chr3 183757542 183757688 -34279470 + AluY SINE Alu 157 302 -9 228 191 0 24 chr3 183758212 183758254 -34278904 + MLT1L LTR MaLR 349 389 -226 485 300 110 31 chr3 183761073 183761300 -34275858 - MIR SINE MIR 0 262 18 238 261 14 14 chr3 183761395 183761464 -34275694 - MIR3 SINE MIR -6 202 134 216 373 0 0 chr3 183761569 183761644 -34275514 + L2 LINE L2 3231 3305 -8 198 273 0 18 chr3 183762678 183762733 -34274425 + L2 LINE L2 3257 3310 -3 1177 187 40 87 chr3 183763011 183763391 -34273767 + L1ME2 LINE L1 5803 6164 0 283 255 245 30 chr3 183763455 183763655 -34273503 - MARNA DNA Mariner -154 432 190 237 315 22 11 chr3 183764482 183764574 -34272584 + MIR3 SINE MIR 116 208 0 423 307 36 7 chr3 183765112 183765249 -34271909 - L3b LINE CR1 -88 1495 1355 514 269 123 6 chr3 183765411 183765582 -34271576 + MER58A DNA MER1_type 2 192 -32 268 355 100 3 chr3 183766328 183766474 -34270684 - MIR3 SINE MIR -18 190 33 10752 16 0 0 chr3 183766900 183768919 -34268239 - L1HS LINE L1 0 6155 4137 13706 27 0 0 chr3 183768937 183770587 -34266571 + L1P LINE L1 2366 4015 -2131 2395 231 119 27 chr3 183771732 183772398 -34264760 + L1MC4 LINE L1 6937 7709 -333 2187 112 3 3 chr3 183772398 183772702 -34264456 + AluSx SINE Alu 1 304 -8 2395 231 119 27 chr3 183772702 183772934 -34264224 + L1MC4 LINE L1 7709 7918 -124 229 323 88 35 chr3 183774765 183775025 -34262133 + L2 LINE L2 2695 2968 -346 1472 302 88 36 chr3 183775167 183775277 -34261881 - L2 LINE L2 -16 3297 3194 200 83 0 28 chr3 183775277 183775313 -34261845 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1472 302 88 36 chr3 183775313 183776102 -34261056 - L2 LINE L2 -119 3194 2336 336 83 0 0 chr3 183777323 183777371 -34259787 + (CA)n Simple_repeat Simple_repeat 1 48 0 221 294 117 61 chr3 183778494 183778671 -34258487 - MIR SINE MIR -53 209 28 244 241 92 11 chr3 183778770 183778857 -34258301 + MER20 DNA MER1_type 77 170 -49 334 155 52 0 chr3 183779251 183779309 -34257849 - MIR SINE MIR -88 174 114 354 274 59 0 chr3 183780352 183780454 -34256704 - MIR SINE MIR -69 193 86 278 317 24 72 chr3 183780518 183780726 -34256432 + L2 LINE L2 2564 2761 -553 216 362 16 93 chr3 183780780 183781037 -34256121 + L2 LINE L2 2826 3062 -210 265 274 171 7 chr3 183781157 183781303 -34255855 + MIR SINE MIR 49 218 -44 183 339 0 0 chr3 183781303 183781359 -34255799 + L2 LINE L2 2712 2767 -547 821 329 135 4 chr3 183781450 183781920 -34255238 + L2 LINE L2 2784 3313 0 183 295 16 49 chr3 183782177 183782238 -34254920 + L2 LINE L2 3214 3272 0 32 26 0 0 chr3 183782379 183782418 -34254740 + AT_rich Low_complexity Low_complexity 1 39 0 2079 86 0 7 chr3 183782818 183783097 -34254061 + AluY SINE Alu 33 309 -2 1850 151 4 0 chr3 183783851 183784129 -34253029 + AluSg SINE Alu 1 279 -31 483 18 0 0 chr3 183784129 183784185 -34252973 + (CA)n Simple_repeat Simple_repeat 1 56 0 28 61 0 0 chr3 183784284 183784333 -34252825 + AT_rich Low_complexity Low_complexity 1 49 0 386 325 45 32 chr3 183784370 183784527 -34252631 - MIR3 SINE MIR -29 179 21 24 0 0 0 chr3 183784765 183784789 -34252369 + AT_rich Low_complexity Low_complexity 1 24 0 336 321 72 5 chr3 183785017 183785226 -34251932 - L1M4c LINE L1 -3526 2856 2634 81 78 0 0 chr3 183785301 183785480 -34251678 + AT_rich Low_complexity Low_complexity 1 179 0 1240 124 5 46 chr3 183785485 183785519 -34251639 - MER2 DNA MER2_type -136 209 175 1919 131 104 18 chr3 183785519 183785854 -34251304 - THE1B LTR MaLR 0 364 1 1240 124 5 46 chr3 183785854 183786037 -34251121 - MER2 DNA MER2_type -170 175 1 315 257 29 19 chr3 183786070 183786175 -34250983 - L1M4c LINE L1 -3840 2542 2437 27 49 0 0 chr3 183786335 183786376 -34250782 + AT_rich Low_complexity Low_complexity 1 41 0 467 138 134 28 chr3 183786427 183786563 -34250595 - MLT1C LTR MaLR -327 140 1 572 107 0 0 chr3 183786614 183786698 -34250460 + AluS SINE Alu 1 84 -229 302 93 56 0 chr3 183786853 183786907 -34250251 + L1MA5 LINE L1 6231 6287 -13 360 215 47 47 chr3 183786937 183787044 -34250114 - MER5A DNA MER1_type -28 161 55 448 292 97 7 chr3 183787054 183787208 -34249950 - MER69A DNA AcHobo -7 170 3 3364 192 34 46 chr3 183787491 183788315 -34248843 - LTR1B LTR ERV1 0 826 13 550 254 37 92 chr3 183788744 183789016 -34248142 - MIR SINE MIR -1 261 5 601 194 6 22 chr3 183789908 183790088 -34247070 + CT-rich Low_complexity Low_complexity 4 180 0 29 28 0 0 chr3 183790452 183790488 -34246670 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr3 183790538 183790561 -34246597 + AT_rich Low_complexity Low_complexity 1 23 0 476 325 51 34 chr3 183791110 183791347 -34245811 - L3b LINE CR1 -12 1571 1331 616 204 18 0 chr3 183791944 183792078 -34245080 + L1PA16 LINE L1 6029 6164 0 1877 129 21 12 chr3 183792081 183792421 -34244737 + L1MA8 LINE L1 5946 6288 -3 451 254 108 8 chr3 183792499 183792629 -34244529 + AluJb SINE Alu 1 143 -169 222 37 0 0 chr3 183792719 183792746 -34244412 + (CA)n Simple_repeat Simple_repeat 2 28 0 294 206 59 0 chr3 183792750 183792818 -34244340 - MER6 DNA MER2_type -339 526 455 9043 172 31 21 chr3 183793083 183794881 -34242277 - L1M4c LINE L1 -4548 1836 21 722 319 94 40 chr3 183795272 183795804 -34241354 - L2 LINE L2 -527 2787 2227 6849 145 18 5 chr3 183795874 183797049 -34240109 + L1P LINE L1 3661 4850 -1296 283 247 74 37 chr3 183797737 183797899 -34239259 + L1ME4a LINE L1 5652 5819 -302 3296 130 44 4 chr3 183797973 183798519 -34238639 - Tigger4(Zombi) DNA MER2_type -1 2730 2163 974 164 42 0 chr3 183798522 183798687 -34238471 - Tigger4(Zombi) DNA MER2_type -2559 172 1 250 209 198 0 chr3 183800054 183800145 -34237013 + L1ME4a LINE L1 5994 6102 -19 206 231 0 0 chr3 183802924 183802963 -34234195 + (CA)n Simple_repeat Simple_repeat 1 39 0 1942 114 10 56 chr3 183803415 183803721 -34233437 - AluSq SINE Alu -21 292 1 1588 162 0 62 chr3 183803730 183804038 -34233120 - AluJo SINE Alu -23 289 1 1253 196 90 42 chr3 183804310 183804712 -34232446 - LTR37A LTR ERV1 0 426 6 21 0 0 0 chr3 183804779 183804800 -34232358 + AT_rich Low_complexity Low_complexity 1 21 0 1841 166 3 3 chr3 183805194 183805490 -34231668 - AluJb SINE Alu -14 298 3 1264 134 0 0 chr3 183806771 183806950 -34230208 + U2 snRNA snRNA 1 179 -9 408 291 168 5 chr3 183807171 183807367 -34229791 + MIR SINE MIR 29 256 -6 352 307 95 0 chr3 183808893 183809030 -34228128 + L1ME4a LINE L1 5951 6100 -21 24 32 0 0 chr3 183809429 183809460 -34227698 + AT_rich Low_complexity Low_complexity 1 31 0 193 294 0 0 chr3 183809744 183809795 -34227363 + L2 LINE L2 3210 3260 -12 1863 114 68 0 chr3 183810619 183810899 -34226259 + AluSq SINE Alu 2 300 -13 1636 224 48 34 chr3 183811697 183812135 -34225023 - MLT1D LTR MaLR -2 503 60 * 2594 204 32 6 chr3 183812123 183812623 -34224535 - MLT2B1 LTR ERVL -7 513 1 380 214 0 60 chr3 183812623 183812707 -34224451 - MLT1D LTR MaLR -426 79 1 204 350 68 28 chr3 183813335 183813512 -34223646 - L2 LINE L2 -659 2655 2472 23 33 0 0 chr3 183816225 183816255 -34220903 + AT_rich Low_complexity Low_complexity 1 30 0 385 237 101 43 chr3 183816769 183816850 -34220308 - MIR SINE MIR -70 192 98 558 249 11 22 chr3 183816850 183817031 -34220127 + MER104 DNA MER2_type 2 180 0 385 237 101 43 chr3 183817031 183817088 -34220070 - MIR SINE MIR -164 98 46 227 280 260 0 chr3 183818782 183818882 -34218276 - MER45C DNA AcHobo -393 560 435 387 235 271 24 chr3 183819024 183819194 -34217964 - MER45C DNA AcHobo -740 213 2 405 248 7 69 chr3 183819600 183819745 -34217413 - MER5B DNA MER1_type -1 177 42 1049 272 46 38 chr3 183819755 183820125 -34217033 - MLT1G1 LTR MaLR -235 355 3 296 306 129 14 chr3 183821399 183821546 -34215612 + MER5A DNA MER1_type 26 189 0 461 280 168 0 chr3 183821569 183821712 -34215446 + MER5A DNA MER1_type 16 182 -7 280 219 14 0 chr3 183821853 183821926 -34215232 + MER116 DNA Mariner 7 80 0 2339 60 0 0 chr3 183821971 183822286 -34214872 - AluY SINE Alu 0 315 1 31 26 0 0 chr3 183822390 183822428 -34214730 + AT_rich Low_complexity Low_complexity 1 38 0 561 30 0 0 chr3 183823974 183824041 -34213117 + (CA)n Simple_repeat Simple_repeat 1 67 0 22 35 0 0 chr3 183824779 183824808 -34212350 + AT_rich Low_complexity Low_complexity 1 29 0 925 293 114 88 chr3 183824808 183825706 -34211452 - L2 LINE L2 -1064 2250 1330 30 27 0 0 chr3 183827167 183827204 -34209954 + AT_rich Low_complexity Low_complexity 1 37 0 2053 135 0 3 chr3 183827922 183828219 -34208939 - AluSq SINE Alu -17 296 1 205 214 18 0 chr3 183828301 183828357 -34208801 + T-rich Low_complexity Low_complexity 4 60 0 25 51 0 0 chr3 183828513 183828552 -34208606 + AT_rich Low_complexity Low_complexity 1 39 0 688 241 37 0 chr3 183829809 183829971 -34207187 - MER69A DNA AcHobo -9 168 1 391 295 30 60 chr3 183830079 183830245 -34206913 - MER5B DNA MER1_type -17 161 1 331 287 138 12 chr3 183830319 183830486 -34206672 - MIR SINE MIR -39 223 36 396 299 152 10 chr3 183831484 183831688 -34205470 + MIR SINE MIR 20 252 -10 180 0 0 0 chr3 183832159 183832179 -34204979 + (TA)n Simple_repeat Simple_repeat 2 21 0 405 293 0 32 chr3 183832227 183832350 -34204808 - L2 LINE L2 -3 3310 3192 389 213 32 53 chr3 183834052 183834146 -34203012 + L2 LINE L2 3181 3272 0 3988 205 22 34 chr3 183834233 183835462 -34201696 - L1MB7 LINE L1 -19 6165 4951 536 197 17 26 chr3 183835465 183835582 -34201576 - Tigger1 DNA MER2_type -19 2399 2284 * 10007 148 29 17 chr3 183835561 183837238 -34199920 - Tigger1 DNA MER2_type -721 1697 1 333 186 0 0 chr3 183837641 183837711 -34199447 + CT-rich Low_complexity Low_complexity 3 72 0 256 80 80 0 chr3 183838424 183838474 -34198684 + CT-rich Low_complexity Low_complexity 4 57 0 629 228 116 30 chr3 183839343 183839575 -34197583 + MER112 DNA MER1_type 2 253 -7 2436 81 3 0 chr3 183839681 183839990 -34197168 - AluSp SINE Alu -3 310 1 30 0 0 0 chr3 183841695 183841725 -34195433 + AT_rich Low_complexity Low_complexity 1 30 0 33 0 0 0 chr3 183841886 183841919 -34195239 + AT_rich Low_complexity Low_complexity 1 33 0 410 293 69 0 chr3 183842397 183842513 -34194645 + MIR SINE MIR 61 184 -78 361 322 132 24 chr3 183844438 183844643 -34192515 - MIR SINE MIR -25 237 11 230 313 20 20 chr3 183845339 183845438 -34191720 - L1ME LINE L1 -462 5659 5561 1833 203 127 7 chr3 183845703 183846167 -34190991 - MLT2B1 LTR ERVL 0 520 1 4337 171 68 20 chr3 183846167 183847033 -34190125 - ERVL-B1 LTR ERVL -7 5757 4850 215 149 0 21 chr3 183847044 183847091 -34190067 + (TA)n Simple_repeat Simple_repeat 1 46 0 23 0 0 0 chr3 183847404 183847427 -34189731 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr3 183849861 183849892 -34187266 + AT_rich Low_complexity Low_complexity 1 31 0 2699 97 13 5 chr3 183850225 183850597 -34186561 - THE1C LTR MaLR 0 375 1 234 0 0 0 chr3 183850869 183850895 -34186263 + (A)n Simple_repeat Simple_repeat 1 26 0 2488 134 5 0 chr3 183852503 183852883 -34184275 - L1PA16 LINE L1 -9 6157 5776 23 33 0 0 chr3 183853253 183853283 -34183875 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr3 183853486 183853508 -34183650 + AT_rich Low_complexity Low_complexity 1 22 0 1216 273 93 31 chr3 183853538 183853963 -34183195 + MER77 LTR ERV1 183 683 -4 242 146 0 36 chr3 183854272 183854327 -34182831 + (GGAAA)n Simple_repeat Simple_repeat 3 55 0 186 167 0 0 chr3 183854851 183854887 -34182271 + (TATG)n Simple_repeat Simple_repeat 1 36 0 2319 104 0 0 chr3 183855259 183855558 -34181600 + AluSx SINE Alu 1 299 -13 469 295 68 34 chr3 183855842 183856079 -34181079 - MIR SINE MIR 0 262 18 236 382 125 0 chr3 183856084 183856228 -34180930 - MIR3 SINE MIR -21 187 26 38 51 0 0 chr3 183856862 183856921 -34180237 + AT_rich Low_complexity Low_complexity 1 59 0 294 294 96 0 chr3 183857051 183857187 -34179971 + MER103 DNA DNA 17 165 -1 341 270 40 40 chr3 183859313 183859413 -34177745 - MIR SINE MIR -112 150 51 2317 173 5 0 chr3 183860408 183860812 -34176346 - L1MC1 LINE L1 -18 6315 5910 698 159 17 1 chr3 183860824 183860957 -34176201 + L1MC1 LINE L1 5786 5923 -250 1782 162 41 21 chr3 183860957 183861213 -34175945 + MER7A DNA MER2_type 1 265 -2773 2424 132 11 0 chr3 183861213 183861584 -34175574 - THE1C LTR MaLR 0 375 1 1782 162 41 21 chr3 183861584 183861667 -34175491 + MER7A DNA MER2_type 265 345 -1 225 0 0 0 chr3 183861792 183861817 -34175341 + (T)n Simple_repeat Simple_repeat 1 25 0 282 125 0 0 chr3 183862999 183863047 -34174111 + (TC)n Simple_repeat Simple_repeat 1 48 0 189 0 0 0 chr3 183863047 183863068 -34174090 + (TG)n Simple_repeat Simple_repeat 2 22 0 1742 179 126 3 chr3 183864043 183864401 -34172757 + MER93a LTR ERV1 1 402 0 274 300 94 24 chr3 183866950 183867120 -34170038 + L2 LINE L2 2858 3039 -274 313 241 72 12 chr3 183867143 183867226 -34169932 + L2 LINE L2 3225 3312 -1 361 304 65 27 chr3 183867239 183867423 -34169735 - MIR SINE MIR -71 191 1 271 157 29 0 chr3 183869511 183869581 -34167577 + (TA)n Simple_repeat Simple_repeat 1 72 0 242 329 90 32 chr3 183869594 183869749 -34167409 + L3 LINE CR1 1413 1576 -1 28 0 0 0 chr3 183869884 183869912 -34167246 + AT_rich Low_complexity Low_complexity 1 28 0 262 275 14 0 chr3 183870711 183870780 -34166378 + L3 LINE CR1 1507 1576 -1 29 47 0 0 chr3 183871533 183871576 -34165582 + AT_rich Low_complexity Low_complexity 1 43 0 244 330 100 20 chr3 183871795 183871895 -34165263 + L2 LINE L2 3153 3260 -12 2982 272 119 51 chr3 183872335 183873008 -34164150 - HAL1 LINE L1 -6 2501 1875 2561 62 0 0 chr3 183873008 183873313 -34163845 + AluY SINE Alu 1 305 -6 2982 272 119 51 chr3 183873313 183874255 -34162903 - HAL1 LINE L1 -632 1875 999 324 0 0 0 chr3 183874255 183874291 -34162867 + (TG)n Simple_repeat Simple_repeat 1 36 0 212 0 36 0 chr3 183874290 183874318 -34162840 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 2982 272 119 51 chr3 183874291 183874923 -34162235 - HAL1 LINE L1 -1508 999 48 1817 196 63 42 chr3 183876086 183876581 -34160577 + MLT1D LTR MaLR 1 505 0 1113 309 28 55 chr3 183877199 183877727 -34159431 - MLT1H LTR MaLR 0 549 36 2164 126 0 0 chr3 183877814 183878124 -34159034 - AluSx SINE Alu -2 310 1 22 0 0 0 chr3 183878169 183878191 -34158967 + AT_rich Low_complexity Low_complexity 1 22 0 1668 158 3 20 chr3 183878200 183878503 -34158655 - AluJb SINE Alu -14 298 1 476 273 91 18 chr3 183878892 183879057 -34158101 + MER5B DNA MER1_type 1 177 -1 24 53 0 0 chr3 183879388 183879426 -34157732 + AT_rich Low_complexity Low_complexity 1 38 0 28 0 0 0 chr3 183880277 183880305 -34156853 + AT_rich Low_complexity Low_complexity 1 28 0 217 323 167 35 chr3 183881368 183881559 -34155599 + L2 LINE L2 2332 2575 -739 185 0 40 0 chr3 183881559 183881584 -34155574 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 217 323 167 35 chr3 183881584 183881680 -34155478 + L2 LINE L2 2575 2657 -657 185 326 33 33 chr3 183882614 183882706 -34154452 + MIR3 SINE MIR 116 207 -1 384 242 298 6 chr3 183884732 183884893 -34152265 + MER3 DNA MER1_type 2 209 0 1719 203 25 25 chr3 183885044 183885409 -34151749 - MLT1A1 LTR MaLR 0 365 1 305 380 76 6 chr3 183885788 183885946 -34151212 - MIR3 SINE MIR -21 187 19 564 260 212 14 chr3 183886066 183886354 -34150804 + MER113 DNA MER1_type? 2 346 -175 1018 236 59 84 chr3 183886900 183887271 -34149887 - LTR37B LTR ERV1 0 468 110 532 225 48 101 chr3 183887271 183887498 -34149660 + MER20 DNA MER1_type 4 218 -1 1018 236 59 84 chr3 183887498 183887601 -34149557 - LTR37B LTR ERV1 -358 110 6 191 244 0 0 chr3 183888622 183888663 -34148495 + MIR SINE MIR 216 256 -6 363 159 40 58 chr3 183888773 183888918 -34148240 - Alu SINE Alu 0 305 238 3378 177 50 3 chr3 183889077 183889793 -34147365 + L1MA4 LINE L1 5542 6291 -9 24 0 0 0 chr3 183889795 183889819 -34147339 + AT_rich Low_complexity Low_complexity 1 24 0 183 367 73 11 chr3 183889928 183890105 -34147053 - MIR SINE MIR 0 262 75 231 174 0 22 chr3 183890497 183890543 -34146615 + MIR3 SINE MIR 129 173 -35 633 285 63 11 chr3 183890635 183890967 -34146191 - MER57B LTR ERV1 0 403 11 756 295 55 25 chr3 183890968 183891331 -34145827 - MER57A-int LTR ERV1 -389 7148 6775 984 324 21 32 chr3 183892178 183892938 -34144220 - MER57A-int LTR ERV1 -1375 6162 2243 2460 57 24 0 chr3 183893030 183893326 -34143832 + AluY SINE Alu 1 303 -8 1816 187 13 29 chr3 183893340 183893715 -34143443 - MER57A-int LTR ERV1 -1781 5756 5388 607 271 142 25 chr3 183893717 183894034 -34143124 - MER93b LTR ERV1 0 373 20 1932 302 36 36 chr3 183894059 183894972 -34142186 - MER57A-int LTR ERV1 -388 7149 6237 24 0 0 0 chr3 183895311 183895335 -34141823 + AT_rich Low_complexity Low_complexity 1 24 0 1370 298 40 65 chr3 183895560 183896905 -34140253 - MER57A-int LTR ERV1 -1357 6180 2017 324 369 67 24 chr3 183897002 183897330 -34139828 - MER57A-int LTR ERV1 -2924 3877 3536 541 316 65 62 chr3 183898126 183898175 -34138983 - MER57A-int LTR ERV1 -4062 585 538 2305 86 0 7 chr3 183898175 183898476 -34138682 + AluY SINE Alu 1 299 -12 541 316 65 62 chr3 183898476 183898859 -34138299 - MER57A-int LTR ERV1 -4109 538 152 434 49 16 0 chr3 183899972 183900033 -34137125 + (TG)n Simple_repeat Simple_repeat 2 63 0 1797 178 0 0 chr3 183900050 183900336 -34136822 - AluJb SINE Alu -26 286 1 294 291 9 18 chr3 183900634 183900744 -34136414 - MER57A-int LTR ERV1 -5423 1378 1270 1938 168 0 0 chr3 183901179 183901476 -34135682 + AluSx SINE Alu 1 297 -15 3351 35 2 0 chr3 183901476 183901877 -34135281 + L1PA3 LINE L1 5749 6150 -5 274 339 115 12 chr3 183902143 183902308 -34134850 - MER57A-int LTR ERV1 -7342 195 14 380 235 84 67 chr3 183902322 183902501 -34134657 - MER57A LTR ERV1 0 403 192 * 576 262 35 7 chr3 183902498 183902639 -34134519 - MER93b LTR ERV1 -211 162 18 450 259 40 16 chr3 183902685 183902878 -34134280 - MER31-int LTR ERV1 -1503 3433 3338 * 1337 242 87 78 chr3 183902852 183904208 -34132950 - MER31-int LTR ERV1 -1885 3051 1802 2157 127 0 3 chr3 183904208 183904508 -34132650 + AluSx SINE Alu 3 301 -11 1337 242 87 78 chr3 183904508 183904584 -34132574 - MER31-int LTR ERV1 -3134 1802 1728 225 160 20 180 chr3 183904584 183904684 -34132474 + MER34 LTR ERV1 1 84 -458 291 216 129 35 chr3 183904763 183904879 -34132279 + LTR48B LTR ERV1 235 361 -283 794 239 175 22 chr3 183905134 183905412 -34131746 - MER57A LTR ERV1 0 403 113 617 71 0 12 chr3 183905413 183905497 -34131661 + AluSg/x SINE Alu 218 300 -9 1703 130 111 0 chr3 183905873 183906134 -34131024 - AluSx SINE Alu -10 302 13 309 326 61 0 chr3 183906461 183906559 -34130599 - L2 LINE L2 0 3272 3169 248 140 0 0 chr3 183909453 183909503 -34127655 + LTR66 LTR ERVL 394 443 -167 1693 161 3 11 chr3 183909789 183910114 -34127044 - AluSp SINE Alu 0 323 1 2255 81 3 69 chr3 183910137 183910470 -34126688 - AluY SINE Alu 0 311 1 201 372 44 18 chr3 183911228 183911341 -34125817 + MIR SINE MIR 49 164 -98 25 0 0 0 chr3 183911360 183911385 -34125773 + AT_rich Low_complexity Low_complexity 1 25 0 192 343 56 46 chr3 183911749 183911857 -34125301 - MIR SINE MIR -143 119 11 25 51 0 0 chr3 183912534 183912573 -34124585 + AT_rich Low_complexity Low_complexity 1 39 0 188 275 75 62 chr3 183912708 183912788 -34124370 - MIR SINE MIR -63 145 65 456 217 17 25 chr3 183913997 183914117 -34123041 + MER112 DNA MER1_type 1 119 -141 2753 166 0 74 chr3 183914180 183914721 -34122437 + MLT2B2 LTR ERVL 15 515 0 594 252 69 5 chr3 183914721 183914939 -34122219 - LTR37B LTR ERV1 -39 429 198 255 275 30 76 chr3 183915160 183915291 -34121867 + MER112 DNA MER1_type 129 253 -7 201 306 0 0 chr3 183915376 183915425 -34121733 + GA-rich Low_complexity Low_complexity 3 51 0 22 0 0 0 chr3 183916620 183916642 -34120516 + AT_rich Low_complexity Low_complexity 1 22 0 289 264 182 21 chr3 183917315 183917488 -34119670 + MIR SINE MIR 4 199 -63 5732 145 24 16 chr3 183917949 183919593 -34117565 - L1MA8 LINE L1 -3 6288 4632 31 0 0 0 chr3 183920541 183920572 -34116586 + AT_rich Low_complexity Low_complexity 1 31 0 231 269 296 0 chr3 183921847 183921955 -34115203 - L2 LINE L2 0 3272 3133 26 30 0 0 chr3 183922842 183922875 -34114283 + AT_rich Low_complexity Low_complexity 1 33 0 820 254 63 1 chr3 183924469 183924696 -34112462 + MIR SINE MIR 16 258 -4 1929 113 62 0 chr3 183924852 183925126 -34112032 + AluSx SINE Alu 1 291 -21 416 333 174 14 chr3 183927271 183927484 -34109674 - MIR SINE MIR -2 260 14 1650 172 105 6 chr3 183928813 183929145 -34108013 + MLT1A1 LTR MaLR 1 365 0 406 310 101 22 chr3 183929333 183929691 -34107467 + L1ME4a LINE L1 5523 5908 -213 468 297 39 78 chr3 183930840 183931197 -34105961 - MLT1J LTR MaLR -45 466 124 2375 69 10 13 chr3 183931241 183931545 -34105613 + AluY SINE Alu 3 305 -6 316 301 86 18 chr3 183932563 183932726 -34104432 - MER117 DNA MER1_type -2 195 22 216 268 89 0 chr3 183933573 183933629 -34103529 - L2 LINE L2 -1 3271 3211 2423 85 0 0 chr3 183934030 183934335 -34102823 - AluY SINE Alu -6 305 1 28 29 0 0 chr3 183934913 183934948 -34102210 + AT_rich Low_complexity Low_complexity 1 35 0 276 152 0 0 chr3 183936531 183936577 -34100581 + MARNA DNA Mariner 199 244 -342 1024 67 0 14 chr3 183937629 183937788 -34099370 - L1PA6 LINE L1 -159 5995 5862 192 77 0 0 chr3 183938067 183938093 -34099065 + (TC)n Simple_repeat Simple_repeat 1 26 0 433 228 70 18 chr3 183938094 183938208 -34098950 - FLAM_A SINE Alu -13 120 1 24 53 0 0 chr3 183938298 183938336 -34098822 + AT_rich Low_complexity Low_complexity 1 38 0 2349 48 0 7 chr3 183938369 183938664 -34098494 - L1PA6 LINE L1 0 6154 5862 302 133 82 22 chr3 183939583 183939718 -34097440 + (TA)n Simple_repeat Simple_repeat 2 144 0 303 322 83 16 chr3 183940734 183940855 -34096303 + L2 LINE L2 3144 3272 0 227 295 29 38 chr3 183941495 183941600 -34095558 + L2 LINE L2 2254 2357 -957 231 263 18 88 chr3 183941721 183941892 -34095266 + LTR37A LTR ERV1 111 269 -157 441 0 0 0 chr3 183941892 183941941 -34095217 + (TG)n Simple_repeat Simple_repeat 2 50 0 428 103 138 0 chr3 183941942 183942029 -34095129 + LTR37B LTR ERV1 364 462 -6 1912 190 10 13 chr3 183942423 183942812 -34094346 - MLT1B LTR MaLR 0 390 3 186 275 0 0 chr3 183942835 183942875 -34094283 - L2 LINE L2 -12 3301 3262 3789 132 44 59 chr3 183943770 183944567 -34092591 + LTR1 LTR ERV1 1 785 0 284 327 44 25 chr3 183945234 183945393 -34091765 - L2 LINE L2 -998 2316 2155 204 254 83 88 chr3 183945576 183945757 -34091401 - L2 LINE L2 -1323 1991 1812 221 339 198 0 chr3 183946433 183946554 -34090604 - L2 LINE L2 -2 3270 3126 673 133 0 0 chr3 183950471 183950569 -34086589 + MER4A LTR ERV1 1 98 -566 1719 134 3 88 chr3 183950571 183950945 -34086213 + MER4A LTR ERV1 263 664 0 256 251 125 56 chr3 183951200 183951369 -34085789 + MIR SINE MIR 32 208 -54 461 285 153 31 chr3 183952704 183952798 -34084360 + MER102b DNA MER1_type 4 85 -1343 2377 166 24 5 chr3 183952798 183953213 -34083945 - MSTB LTR MaLR -2 424 2 461 285 153 31 chr3 183953213 183953225 -34083933 + MER102b DNA MER1_type 85 94 -1334 1528 183 32 11 chr3 183953225 183953509 -34083649 + AluJo SINE Alu 1 290 -22 461 285 153 31 chr3 183953509 183953689 -34083469 + MER102b DNA MER1_type 94 326 -15 202 369 19 97 chr3 183956007 183956213 -34080945 - L2 LINE L2 -91 3181 2992 634 221 28 7 chr3 183956230 183956375 -34080783 - MIR SINE MIR -28 234 87 597 279 82 31 chr3 183956377 183956948 -34080210 + MLT1F LTR MaLR 1 590 0 318 234 78 0 chr3 183956948 183957025 -34080133 - MIR SINE MIR -173 89 7 2294 88 65 29 chr3 183958444 183958795 -34078363 + THE1B LTR MaLR 1 364 0 628 256 73 16 chr3 183958905 183959096 -34078062 - MIR SINE MIR -11 251 50 341 338 90 0 chr3 183959643 183959788 -34077370 - MIR SINE MIR -56 206 49 26 0 0 0 chr3 183960686 183960712 -34076446 + AT_rich Low_complexity Low_complexity 1 26 0 390 282 35 28 chr3 183961619 183961761 -34075397 - MIR SINE MIR -1 261 119 1992 149 3 15 chr3 183961937 183962273 -34074885 - L1PB4 LINE L1 -2 6154 5823 3901 125 60 15 chr3 183962274 183963135 -34074023 - L1PB4 LINE L1 -216 5940 5043 1978 136 0 4 chr3 183963723 183964003 -34073155 - AluSx SINE Alu -33 279 1 255 264 143 75 chr3 183964173 183964351 -34072807 - L1ME LINE L1 -280 5841 5677 2028 112 3 14 chr3 183964351 183964683 -34072475 + AluSx SINE Alu 3 331 0 255 264 143 75 chr3 183964683 183964984 -34072174 - L1ME LINE L1 -444 5677 5328 183 178 27 14 chr3 183965025 183965098 -34072060 + (TA)n Simple_repeat Simple_repeat 1 74 0 24 0 0 0 chr3 183966208 183966232 -34070926 + AT_rich Low_complexity Low_complexity 1 24 0 315 0 0 0 chr3 183966780 183966815 -34070343 + (TG)n Simple_repeat Simple_repeat 2 36 0 273 328 9 26 chr3 183967321 183967437 -34069721 + L1ME LINE L1 140 253 -5952 684 268 169 72 chr3 183967672 183968336 -34068822 - LTR41 LTR ERVL -10 763 36 314 267 64 60 chr3 183968379 183968820 -34068338 + L1ME LINE L1 996 1441 -4955 1465 158 15 4 chr3 183968820 183969086 -34068072 - L1MA6 LINE L1 -12 6288 6020 314 267 64 60 chr3 183969086 183969142 -34068016 + L1ME LINE L1 1441 1495 -4901 248 138 92 46 chr3 183969292 183969357 -34067801 + MLT1F1 LTR MaLR 35 102 -465 2331 179 84 20 chr3 183969361 183969910 -34067248 + L1MC3 LINE L1 7170 7753 -32 238 332 105 20 chr3 183969996 183970679 -34066479 + L1ME LINE L1 1682 2422 -3974 * 7445 35 6 3 chr3 183970677 183972001 -34065157 + L1P2 LINE L1 4475 5799 -356 398 293 55 82 chr3 183972706 183973034 -34064124 - MLT1I LTR MaLR 0 409 91 274 226 333 0 chr3 183973509 183973611 -34063547 + MIR SINE MIR 34 169 -93 672 278 40 6 chr3 183973829 183974005 -34063153 + MIR SINE MIR 8 189 -73 924 204 14 5 chr3 183974020 183974240 -34062918 - L1M2 LINE L1 -4361 2488 2267 597 254 25 20 chr3 183974475 183974676 -34062482 - THE1C LTR MaLR -9 366 165 1002 168 29 38 chr3 183974788 183975026 -34062132 + MLT1E3 LTR MaLR 389 624 0 494 248 8 8 chr3 183975204 183975333 -34061825 - LTR67 LTR ERVL 0 557 429 535 252 33 13 chr3 183975698 183975849 -34061309 - MIR SINE MIR -62 200 47 225 0 0 0 chr3 183978034 183978059 -34059099 + (T)n Simple_repeat Simple_repeat 1 25 0 2714 97 13 5 chr3 183978330 183978702 -34058456 + THE1C LTR MaLR 1 375 0 24 32 0 0 chr3 183979035 183979066 -34058092 + AT_rich Low_complexity Low_complexity 1 31 0 807 139 0 0 chr3 183980731 183980846 -34056312 + FLAM_C SINE Alu 1 115 -18 1869 121 3 34 chr3 183980856 183981178 -34055980 - AluSx SINE Alu 0 312 1 1056 264 34 11 chr3 183981234 183981503 -34055655 - MER119 DNA MER1_type -307 276 2 701 289 92 16 chr3 183981652 183981957 -34055201 + HAL1 LINE L1 11 338 -2169 1574 147 35 8 chr3 183982468 183982727 -34054431 + AluJo SINE Alu 28 293 -19 2079 103 21 10 chr3 183982744 183983035 -34054123 - AluSx SINE Alu -18 294 1 1525 254 28 9 chr3 183983035 183983492 -34053666 - L1PBa LINE L1 -3544 3318 2849 234 352 0 11 chr3 183984790 183984881 -34052277 + MLT1L LTR MaLR 358 447 -168 864 127 0 0 chr3 183985034 183985152 -34052006 + FLAM_C SINE Alu 1 118 -15 309 326 61 0 chr3 183986137 183986235 -34050923 + L2 LINE L2 3169 3272 0 530 211 4 84 chr3 183986565 183986792 -34050366 + AluSx SINE Alu 13 221 -91 261 0 0 0 chr3 183986959 183986988 -34050170 + (A)n Simple_repeat Simple_repeat 1 29 0 414 0 0 0 chr3 183986988 183987034 -34050124 + (TA)n Simple_repeat Simple_repeat 2 47 0 596 167 0 9 chr3 183987207 183987315 -34049843 + AluSg/x SINE Alu 186 292 -20 1805 82 13 46 chr3 183987512 183987817 -34049341 + AluY SINE Alu 2 296 -15 243 0 0 0 chr3 183987818 183987845 -34049313 + (CA)n Simple_repeat Simple_repeat 1 27 0 884 239 100 55 chr3 183988418 183988670 -34048488 - MLT1J LTR MaLR -188 323 53 2330 103 0 3 chr3 183988670 183988971 -34048187 + AluSx SINE Alu 1 300 -12 884 239 100 55 chr3 183988971 183989027 -34048131 - MLT1J LTR MaLR -458 53 1 2367 81 0 13 chr3 183989659 183989968 -34047190 - AluY SINE Alu -6 305 1 436 315 0 0 chr3 183990006 183990168 -34046990 - L1MEc LINE L1 -4999 1397 1236 720 90 0 54 chr3 183990186 183990297 -34046861 - AluSp/q SINE Alu -28 285 181 557 314 145 70 chr3 183990511 183991253 -34045905 - L2 LINE L2 -76 3196 2387 1976 87 72 4 chr3 183991344 183991620 -34045538 + AluY SINE Alu 1 295 -16 1637 126 0 13 chr3 183991837 183992067 -34045091 - AluSq SINE Alu -86 227 1 996 93 0 7 chr3 183992743 183992883 -34044275 - AluSp/q SINE Alu -9 304 166 413 169 0 0 chr3 183992901 183992966 -34044192 - AluJ/FLAM SINE Alu -245 67 3 334 201 98 54 chr3 183993318 183993502 -34043656 + L1ME3A LINE L1 2793 2984 -3162 648 267 107 85 chr3 183993599 183994104 -34043054 + MLT1H1 LTR MaLR 40 555 0 1453 291 72 51 chr3 183994112 183994596 -34042562 + L1ME3A LINE L1 3035 3508 -2638 432 0 0 0 chr3 183994596 183994644 -34042514 + (CA)n Simple_repeat Simple_repeat 1 48 0 1453 291 72 51 chr3 183994644 183995250 -34041908 + L1ME3A LINE L1 3508 4147 -1999 1632 265 48 20 chr3 183995271 183995587 -34041571 + L1ME3A LINE L1 5320 5660 -510 1056 184 0 156 chr3 183995587 183995870 -34041288 + MER8 DNA MER2_type 1 239 0 1632 265 48 20 chr3 183995870 183996112 -34041046 + L1ME3A LINE L1 5660 5894 -276 209 182 18 0 chr3 183996331 183996386 -34040772 + CT-rich Low_complexity Low_complexity 1 56 0 21 57 0 0 chr3 183997072 183997107 -34040051 + AT_rich Low_complexity Low_complexity 1 35 0 326 327 75 0 chr3 183997818 183997925 -34039233 - L2 LINE L2 -1 3312 3198 562 300 48 14 chr3 183997982 183998192 -34038966 + MIR SINE MIR 2 218 -44 22 0 0 0 chr3 183999176 183999198 -34037960 + AT_rich Low_complexity Low_complexity 1 22 0 1019 159 0 0 chr3 183999955 184000106 -34037052 + FRAM SINE Alu 1 151 -25 22 0 0 0 chr3 184000106 184000128 -34037030 + AT_rich Low_complexity Low_complexity 1 22 0 3613 136 10 2 chr3 184000420 184000943 -34036215 + MER1A DNA MER1_type 1 527 0 267 31 0 0 chr3 184000946 184000978 -34036180 + (CA)n Simple_repeat Simple_repeat 1 32 0 238 220 0 0 chr3 184000979 184001029 -34036129 + (TA)n Simple_repeat Simple_repeat 2 51 0 243 309 96 9 chr3 184001033 184001253 -34035905 - L1 LINE L1 -2237 3909 3671 748 190 22 0 chr3 184001255 184001392 -34035766 + MER20 DNA MER1_type 1 140 -79 354 346 81 7 chr3 184001702 184001838 -34035320 + L2 LINE L2 3127 3272 0 22 80 0 0 chr3 184002325 184002375 -34034783 + AT_rich Low_complexity Low_complexity 1 50 0 256 318 28 56 chr3 184002493 184002600 -34034558 - MIR SINE MIR -86 122 19 269 286 0 32 chr3 184002842 184002905 -34034253 - L2 LINE L2 -10 3262 3202 243 298 75 0 chr3 184003131 184003225 -34033933 - L3b LINE CR1 -180 1403 1303 493 264 81 20 chr3 184003824 184003972 -34033186 + MIR SINE MIR 36 192 -70 181 394 0 43 chr3 184004628 184004722 -34032436 - L2 LINE L2 -100 3172 3083 317 237 41 12 chr3 184007368 184007537 -34029621 + (TTTA)n Simple_repeat Simple_repeat 1 174 0 492 184 221 22 chr3 184007790 184007926 -34029232 - MER5A DNA MER1_type -13 176 14 1691 190 40 18 chr3 184008070 184008470 -34028688 - L1MB8 LINE L1 -12 6166 5758 7785 19 0 1 chr3 184008690 184009593 -34027565 - L1PA3 LINE L1 0 6155 5254 9683 34 3 0 chr3 184009604 184010769 -34026389 + L1PA3 LINE L1 4078 5245 -901 466 363 39 6 chr3 184012179 184012358 -34024800 + MIR3 SINE MIR 16 200 -8 1927 80 30 86 chr3 184012934 184013282 -34023876 + AluSq SINE Alu 1 331 0 21 36 0 0 chr3 184013347 184013375 -34023783 + AT_rich Low_complexity Low_complexity 1 28 0 895 261 90 67 chr3 184013998 184014520 -34022638 - LTR41 LTR ERVL -6 767 234 890 279 113 3 chr3 184014658 184014977 -34022181 - LTR41 LTR ERVL -419 354 1 395 272 75 53 chr3 184015079 184015390 -34021768 + MLT1I LTR MaLR 98 392 -17 213 231 0 0 chr3 184016036 184016088 -34021070 + (TTA)n Simple_repeat Simple_repeat 3 54 0 204 207 0 138 chr3 184016516 184016574 -34020584 + MIR SINE MIR 119 163 -99 2216 71 36 0 chr3 184016574 184016855 -34020303 - AluY SINE Alu -5 306 16 204 207 0 138 chr3 184016855 184016883 -34020275 + MIR SINE MIR 163 193 -69 212 378 64 32 chr3 184017478 184017634 -34019524 + L2 LINE L2 3112 3272 0 32 0 0 0 chr3 184017749 184017781 -34019377 + AT_rich Low_complexity Low_complexity 1 32 0 1849 158 7 3 chr3 184017865 184018175 -34018983 - AluJb SINE Alu 0 312 2 224 156 67 11 chr3 184019597 184019687 -34017471 + (TA)n Simple_repeat Simple_repeat 1 95 0 29 60 0 0 chr3 184022314 184022364 -34014794 + AT_rich Low_complexity Low_complexity 1 50 0 31 26 0 0 chr3 184022427 184022465 -34014693 + AT_rich Low_complexity Low_complexity 1 38 0 2607 191 19 58 chr3 184022777 184023414 -34013744 + LTR9 LTR ERV1 1 612 0 31 58 0 0 chr3 184023474 184023526 -34013632 + AT_rich Low_complexity Low_complexity 1 52 0 2194 118 3 3 chr3 184023885 184024198 -34012960 - AluSp SINE Alu 0 313 1 21 0 0 0 chr3 184026141 184026162 -34010996 + AT_rich Low_complexity Low_complexity 1 21 0 2045 208 44 11 chr3 184026361 184026812 -34010346 - MLT1C LTR MaLR 0 467 2 2263 81 7 26 chr3 184027148 184027503 -34009655 + AluSq SINE Alu 1 313 0 327 302 47 55 chr3 184027697 184027952 -34009206 + L1MEd LINE L1 980 1232 -4887 378 288 184 6 chr3 184027976 184028139 -34009019 + HAL1 LINE L1 1375 1566 -941 3181 108 10 8 chr3 184028362 184028853 -34008305 - L1PB1 LINE L1 -2 6149 5658 1589 111 93 65 chr3 184029292 184029571 -34007587 + AluSx SINE Alu 1 287 -25 397 248 142 21 chr3 184030250 184030391 -34006767 - MIR SINE MIR -6 256 99 * 491 228 11 117 chr3 184030389 184030569 -34006589 + MER5A DNA MER1_type 28 188 -1 252 247 99 12 chr3 184030620 184030701 -34006457 + L2 LINE L2 3168 3255 -17 201 121 0 0 chr3 184030958 184030991 -34006167 + (T)n Simple_repeat Simple_repeat 1 33 0 355 310 45 19 chr3 184031228 184031383 -34005775 + MIR SINE MIR 18 176 -86 246 62 0 0 chr3 184031696 184031728 -34005430 + (GA)n Simple_repeat Simple_repeat 1 32 0 263 222 69 76 chr3 184032748 184032892 -34004266 + L1ME4a LINE L1 5970 6112 -9 230 114 0 23 chr3 184032993 184033037 -34004121 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 26 30 0 0 chr3 184034127 184034160 -34002998 + AT_rich Low_complexity Low_complexity 1 33 0 5739 119 17 2 chr3 184034542 184035429 -34001729 + L1MA2 LINE L1 5405 6304 0 1490 285 26 0 chr3 184036128 184036553 -34000605 - LTR16A LTR ERVL 0 450 15 14639 129 32 17 chr3 184037185 184039562 -33997596 + Tigger1 DNA MER2_type 1 2412 -6 2034 146 0 7 chr3 184039644 184039952 -33997206 + AluSx SINE Alu 1 306 -6 180 176 0 0 chr3 184040416 184040450 -33996708 + (CA)n Simple_repeat Simple_repeat 1 34 0 1146 181 62 0 chr3 184040465 184040675 -33996483 + MER46A DNA MER2_type 8 230 -6 24 32 0 0 chr3 184041017 184041048 -33996110 + AT_rich Low_complexity Low_complexity 1 31 0 2265 108 0 0 chr3 184042961 184043257 -33993901 + AluSg SINE Alu 1 296 -14 610 212 83 36 chr3 184043304 184043497 -33993661 - MER45C DNA AcHobo -27 926 725 1145 277 129 68 chr3 184043528 184044131 -33993027 - MER45C DNA AcHobo -313 640 1 1063 174 89 27 chr3 184044342 184044600 -33992558 + ORSL DNA AcHobo 1 274 -1 494 281 23 8 chr3 184045850 184045978 -33991180 + L3 LINE CR1 1430 1559 -18 545 284 51 17 chr3 184046260 184046436 -33990722 + MER5A DNA MER1_type 7 188 -1 612 245 161 0 chr3 184046452 184046607 -33990551 + MER5A DNA MER1_type 9 188 -1 2195 63 0 4 chr3 184046722 184046991 -33990167 + AluY SINE Alu 1 268 -43 25 0 0 0 chr3 184047218 184047243 -33989915 + AT_rich Low_complexity Low_complexity 1 25 0 233 272 99 39 chr3 184047362 184047562 -33989596 + L1ME LINE L1 8 218 -5852 1502 266 39 15 chr3 184047608 184048075 -33989083 + L1ME LINE L1 262 739 -5522 211 229 0 21 chr3 184048443 184048491 -33988667 + GA-rich Low_complexity Low_complexity 2 48 0 26 0 0 0 chr3 184048518 184048544 -33988614 + AT_rich Low_complexity Low_complexity 1 26 0 208 325 83 71 chr3 184049191 184049360 -33987798 + MIR SINE MIR 22 192 -70 723 294 26 86 chr3 184049866 184050214 -33986944 - MLT1K LTR MaLR -83 505 181 7840 61 22 0 chr3 184050214 184051199 -33985959 - LTR13 LTR ERVK 0 1007 1 723 294 26 86 chr3 184051199 184051235 -33985923 - MLT1K LTR MaLR -407 181 144 279 390 0 0 chr3 184051671 184051766 -33985392 - L2 LINE L2 -29 3243 3149 1875 147 3 22 chr3 184052120 184052433 -33984725 - AluSx SINE Alu -5 307 1 1434 288 45 11 chr3 184052481 184052925 -33984233 - LTR40c LTR ERVL -6 459 1 183 315 76 47 chr3 184052971 184053247 -33983911 + L2 LINE L2 1600 1883 -1431 233 257 26 9 chr3 184053250 184053363 -33983795 + (TTATA)n Simple_repeat Simple_repeat 5 119 0 * 271 170 27 45 chr3 184053285 184053397 -33983761 + (TA)n Simple_repeat Simple_repeat 1 110 0 346 241 29 22 chr3 184053438 184053575 -33983583 + (TATATG)n Simple_repeat Simple_repeat 2 139 0 317 328 97 34 chr3 184053591 184053859 -33983299 - L2 LINE L2 -613 2701 2417 207 100 0 0 chr3 184054150 184054180 -33982978 + (T)n Simple_repeat Simple_repeat 1 30 0 354 322 244 14 chr3 184054253 184054679 -33982479 + L2 LINE L2 2343 2866 -448 242 258 91 30 chr3 184055395 184055527 -33981631 - MLT1L LTR MaLR 0 615 476 180 0 0 0 chr3 184056218 184056238 -33980920 + (TTCA)n Simple_repeat Simple_repeat 4 23 0 443 223 198 8 chr3 184057441 184057562 -33979596 + MER5A DNA MER1_type 16 159 -30 827 234 0 6 chr3 184057585 184057752 -33979406 + MER5B DNA MER1_type 8 173 -5 21 0 0 0 chr3 184058242 184058263 -33978895 + AT_rich Low_complexity Low_complexity 1 21 0 301 231 0 51 chr3 184058342 184058420 -33978738 - MIR SINE MIR -58 150 82 351 0 0 0 chr3 184058465 184058504 -33978654 + (TG)n Simple_repeat Simple_repeat 1 39 0 2175 128 3 0 chr3 184058575 184058881 -33978277 + AluSx SINE Alu 1 307 -5 605 276 93 14 chr3 184059354 184059568 -33977590 + L3 LINE CR1 707 937 -640 22 0 0 0 chr3 184061321 184061343 -33975815 + AT_rich Low_complexity Low_complexity 1 22 0 315 191 0 12 chr3 184061786 184061870 -33975288 + L1ME4a LINE L1 6039 6121 0 315 0 0 0 chr3 184063089 184063124 -33974034 + (TA)n Simple_repeat Simple_repeat 2 36 0 3633 127 30 2 chr3 184063551 184064125 -33973033 - L1PA16 LINE L1 -9 6157 5568 180 0 0 0 chr3 184064137 184064157 -33973001 + (A)n Simple_repeat Simple_repeat 1 20 0 227 261 0 0 chr3 184064342 184064388 -33972770 + polypyrimidine Low_complexity Low_complexity 1 46 0 25 0 0 0 chr3 184065294 184065319 -33971839 + AT_rich Low_complexity Low_complexity 1 25 0 285 356 42 0 chr3 184065466 184065584 -33971574 + MIR3 SINE MIR 85 207 -1 252 295 42 11 chr3 184065837 184065932 -33971226 - MIR3 SINE MIR -10 198 101 1507 151 12 4 chr3 184066023 184066275 -33970883 - AluSx SINE Alu -11 301 48 239 320 39 29 chr3 184068746 184068849 -33968309 + MIR SINE MIR 34 137 -125 270 267 0 0 chr3 184069370 184069430 -33967728 + MIR SINE MIR 197 256 -6 5820 82 38 26 chr3 184069719 184070607 -33966551 - L1MA1 LINE L1 0 6302 5404 271 308 211 0 chr3 184070628 184070784 -33966374 + MIR SINE MIR 74 262 0 1706 196 45 11 chr3 184070916 184071269 -33965889 + MLT1A1 LTR MaLR 1 365 0 283 337 82 29 chr3 184071754 184071997 -33965161 + L2 LINE L2 1392 1647 -1667 431 365 72 47 chr3 184072017 184072126 -33965032 + L2 LINE L2 1873 1978 -1336 1637 179 120 11 chr3 184072126 184072483 -33964675 - MSTD LTR MaLR 0 396 1 431 365 72 47 chr3 184072483 184072932 -33964226 + L2 LINE L2 1978 2445 -869 774 167 53 0 chr3 184072952 184073084 -33964074 + MSTC LTR MaLR 3 141 -287 301 363 97 32 chr3 184073086 184073425 -33963733 + L2 LINE L2 2472 2832 -482 230 357 48 0 chr3 184073627 184073711 -33963447 + L2 LINE L2 2966 3053 -219 1512 254 40 25 chr3 184073744 184074188 -33962970 - MER74C LTR ERVL 0 460 10 2252 121 0 0 chr3 184074819 184075124 -33962034 + AluSg SINE Alu 1 305 -5 1942 163 13 26 chr3 184075565 184075945 -33961213 + THE1C LTR MaLR 1 375 0 307 239 80 0 chr3 184076389 184076477 -33960681 - MIR SINE MIR -64 198 104 302 296 20 10 chr3 184077017 184077115 -33960043 + MIR SINE MIR 9 107 -155 720 285 5 14 chr3 184077119 184077326 -33959832 - MIR SINE MIR 0 262 58 474 278 53 21 chr3 184079643 184079830 -33957328 - MIR SINE MIR -6 256 64 199 339 0 0 chr3 184079830 184079886 -33957272 - MIR SINE MIR -115 93 38 228 311 0 0 chr3 184080047 184080075 -33957083 - HAL1b LINE L1 -43 1305 1278 329 241 13 0 chr3 184080075 184080154 -33957004 - L1ME4a LINE L1 -83 6038 1232 22 0 0 0 chr3 184080755 184080777 -33956381 + AT_rich Low_complexity Low_complexity 1 22 0 1001 363 34 8 chr3 184080904 184081372 -33955786 + L1M3a LINE L1 1 480 -5475 13903 201 46 20 chr3 184081956 184087746 -33949412 + L1MA4 LINE L1 539 6477 -5 252 200 0 0 chr3 184087757 184087817 -33949341 + (TATG)n Simple_repeat Simple_repeat 1 60 0 25 0 0 0 chr3 184087826 184087851 -33949307 + AT_rich Low_complexity Low_complexity 1 25 0 729 317 36 25 chr3 184088041 184088401 -33948757 - MER93a LTR ERV1 -35 367 4 1263 168 91 94 chr3 184089257 184089597 -33947561 + MER2 DNA MER2_type 6 344 -1 341 309 128 33 chr3 184089607 184089911 -33947247 - L1ME4a LINE L1 -266 5855 5523 402 231 0 0 chr3 184089996 184090074 -33947084 - Tigger5 DNA MER2_type -4 2319 2242 345 182 0 52 chr3 184090086 184090163 -33946995 + Tigger5 DNA MER2_type 2245 2317 -6 249 224 149 0 chr3 184090167 184090234 -33946924 - Tigger5 DNA MER2_type -2246 77 1 612 346 107 10 chr3 184090268 184090661 -33946497 - LTR16A LTR ERVL 0 450 20 844 298 77 28 chr3 184090889 184091318 -33945840 - LTR16A LTR ERVL 0 450 1 2162 112 10 0 chr3 184091338 184091632 -33945526 + AluSc SINE Alu 1 297 -12 699 120 0 0 chr3 184091797 184091905 -33945253 - L1MA2 LINE L1 0 6304 6197 342 313 72 62 chr3 184092024 184092331 -33944827 - L1ME4a LINE L1 -1096 5050 4741 668 234 108 6 chr3 184093042 184093200 -33943958 - MER45A DNA AcHobo -2 176 3 260 326 47 12 chr3 184093222 184093308 -33943850 - L2 LINE L2 -47 3225 3137 28 0 0 0 chr3 184094584 184094612 -33942546 + AT_rich Low_complexity Low_complexity 1 28 0 2022 51 8 16 chr3 184094868 184095124 -33942034 + AluY SINE Alu 58 311 0 436 286 72 53 chr3 184095566 184095828 -33941330 - L1 LINE L1 -743 5403 5137 22 35 0 0 chr3 184095882 184095911 -33941247 + AT_rich Low_complexity Low_complexity 1 29 0 399 273 56 6 chr3 184096105 184096266 -33940892 - L1ME LINE L1 -460 5661 5493 33 25 0 0 chr3 184096294 184096334 -33940824 + AT_rich Low_complexity Low_complexity 1 40 0 209 273 0 0 chr3 184097175 184097219 -33939939 + C-rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chr3 184097272 184097302 -33939856 + GC_rich Low_complexity Low_complexity 1 30 0 1085 196 35 39 chr3 184097753 184098064 -33939094 - L1M4 LINE L1 -2399 3747 3438 542 270 149 25 chr3 184098499 184098821 -33938337 + L2 LINE L2 2927 3288 -25 24 53 0 0 chr3 184099200 184099238 -33937920 + GC_rich Low_complexity Low_complexity 1 38 0 1040 224 30 30 chr3 184099792 184100055 -33937103 - MLT1A2 LTR MaLR 0 374 112 2487 55 3 0 chr3 184100057 184100349 -33936809 - AluY SINE Alu -18 293 1 1002 156 124 16 chr3 184100364 184100621 -33936537 + LTR12 LTR ERV1 1 285 -429 288 153 0 42 chr3 184100625 184100697 -33936461 + LTR30 LTR ERV1 556 624 -98 528 194 4 0 chr3 184100697 184100810 -33936348 + LTR12 LTR ERV1 362 710 -4 480 225 54 0 chr3 184100810 184100921 -33936237 - MLT1A2 LTR MaLR -256 118 2 415 196 12 55 chr3 184101447 184101610 -33935548 - L1ME4a LINE L1 -12 6109 5954 594 339 16 12 chr3 184101748 184101990 -33935168 - MIR SINE MIR 0 262 20 22 0 0 0 chr3 184103368 184103390 -33933768 + AT_rich Low_complexity Low_complexity 1 22 0 511 304 68 14 chr3 184103394 184103614 -33933544 + MIR SINE MIR 5 236 -26 710 279 46 50 chr3 184104053 184104315 -33932843 + MIR SINE MIR 2 262 0 2516 82 12 0 chr3 184104681 184105023 -33932135 + L1PA8 LINE L1 5813 6158 -14 24 53 0 0 chr3 184105023 184105061 -33932097 + AT_rich Low_complexity Low_complexity 1 38 0 27 49 0 0 chr3 184105431 184105472 -33931686 + AT_rich Low_complexity Low_complexity 1 41 0 2516 82 12 0 chr3 184105472 184105814 -33931344 - L1PA8 LINE L1 -14 6158 5813 584 321 19 9 chr3 184106008 184106220 -33930938 - MIR SINE MIR 0 262 49 2266 95 0 41 chr3 184106297 184106613 -33930545 - AluY SINE Alu -8 303 1 24 32 0 0 chr3 184107490 184107521 -33929637 + AT_rich Low_complexity Low_complexity 1 31 0 1336 230 59 118 chr3 184107674 184108540 -33928618 - L1M3e LINE L1 -5134 1896 1082 * 1826 164 13 4 chr3 184108534 184109077 -33928081 - L1P4 LINE L1 -651 5514 4833 39822 39 22 11 chr3 184109184 184114952 -33922206 - L1PA3 LINE L1 0 6155 315 11017 36 18 0 chr3 184114952 184117082 -33920076 - L1PA2 LINE L1 0 6155 4000 39822 39 22 11 chr3 184117082 184117400 -33919758 - L1PA3 LINE L1 -5840 315 2 2284 194 47 4 chr3 184117535 184118046 -33919112 - L1MD1 LINE L1 -7 6235 5703 2866 244 102 68 chr3 184118047 184118964 -33918194 - L1MD1 LINE L1 -1098 5048 4164 1787 185 18 9 chr3 184118964 184119305 -33917853 - MER2 DNA MER2_type 0 344 1 2866 244 102 68 chr3 184119305 184119569 -33917589 - L1MD1 LINE L1 -1982 4164 3911 276 56 0 56 chr3 184119569 184119623 -33917535 + (TA)n Simple_repeat Simple_repeat 2 52 0 2866 244 102 68 chr3 184119623 184120422 -33916736 - L1MD1 LINE L1 -2235 3911 2998 503 321 63 73 chr3 184121134 184121421 -33915737 - L2 LINE L2 -1 3271 2988 1610 176 13 10 chr3 184121993 184122294 -33914864 - AluJo SINE Alu -9 303 2 2113 186 41 21 chr3 184122690 184123320 -33913838 - L1MA10 LINE L1 -9 7701 7037 374 132 13 26 chr3 184123320 184123396 -33913762 + MSTC LTR MaLR 354 428 0 6041 206 20 20 chr3 184123396 184123482 -33913676 - L1MA10 LINE L1 -885 6680 6595 254 0 87 0 chr3 184123482 184123528 -33913630 + (TTG)n Simple_repeat Simple_repeat 2 51 0 6041 206 20 20 chr3 184123528 184124051 -33913107 - L1MA10 LINE L1 -970 6595 6073 505 133 0 44 chr3 184124051 184124141 -33913017 + L1PA11 LINE L1 6089 6174 0 6041 206 20 20 chr3 184124141 184125017 -33912141 - L1MA10 LINE L1 -1491 6074 5194 6239 49 2 1 chr3 184125045 184125857 -33911301 - L1PA5 LINE L1 -4 6150 5338 13329 43 0 1 chr3 184125857 184127589 -33909569 + L1P LINE L1 2900 4630 -1516 476 154 11 0 chr3 184127592 184127683 -33909475 - L1MA10 LINE L1 -2361 5204 5113 972 139 20 0 chr3 184127683 184127868 -33909290 - AluSg/x SINE Alu 0 317 130 4581 249 58 14 chr3 184127869 184129804 -33907354 - L1MA10 LINE L1 -2457 5108 3083 1684 204 40 8 chr3 184131266 184131618 -33905540 - MLT1A1 LTR MaLR 0 365 3 3237 59 2 0 chr3 184131959 184132420 -33904738 - L1P LINE L1 -2785 3361 2900 6586 44 2 1 chr3 184132420 184133236 -33903922 + L1PA5 LINE L1 5338 6154 0 436 272 40 16 chr3 184133507 184133632 -33903526 - MIR3 SINE MIR -14 194 67 1668 131 10 81 chr3 184133732 184134029 -33903129 - AluSx SINE Alu -36 276 1 291 207 23 23 chr3 184134029 184134116 -33903042 + MER5C DNA MER1_type 170 256 -68 1136 181 14 23 chr3 184134124 184134339 -33902819 - AluJb SINE Alu -15 297 85 279 238 100 0 chr3 184134347 184134427 -33902731 + LTR33 LTR ERVL 8 95 -426 1503 193 66 39 chr3 184134429 184134703 -33902455 - Charlie1b DNA MER1_type -2240 521 227 793 104 7 30 chr3 184134703 184134838 -33902320 - FLAM_C SINE Alu 0 133 2 1503 193 66 39 chr3 184134838 184135045 -33902113 - Charlie1b DNA MER1_type -2534 227 27 1672 272 40 36 chr3 184135248 184136090 -33901068 + L1M4c LINE L1 979 1824 -4560 2180 112 0 0 chr3 184136987 184137283 -33899875 + AluY SINE Alu 1 296 -15 2165 94 0 42 chr3 184137289 184137596 -33899562 + AluSg1 SINE Alu 1 294 -15 787 223 41 10 chr3 184137729 184137926 -33899232 - AluJb SINE Alu -28 284 82 2122 125 3 0 chr3 184138618 184138915 -33898243 + AluSq SINE Alu 1 298 -15 2094 108 0 3 chr3 184138946 184139253 -33897905 + AluSc SINE Alu 1 279 -30 2045 126 0 10 chr3 184140129 184140431 -33896727 - AluSx SINE Alu -13 299 1 222 265 0 0 chr3 184140546 184140595 -33896563 + MIR SINE MIR 62 110 -152 1186 188 5 10 chr3 184140718 184140920 -33896238 - AluJo SINE Alu -109 203 3 2333 104 0 3 chr3 184140946 184141253 -33895905 - AluSx SINE Alu -6 306 1 683 174 0 0 chr3 184141331 184141446 -33895712 - AluJb SINE Alu -8 304 190 880 112 0 0 chr3 184141458 184141574 -33895584 - AluSq/x SINE Alu -196 116 1 418 118 284 49 chr3 184142072 184142174 -33894984 - FLAM_C SINE Alu -5 128 3 1921 149 0 0 chr3 184142283 184142564 -33894594 - AluSq SINE Alu -32 281 1 540 54 0 14 chr3 184142564 184142638 -33894520 - MLT2B1 LTR ERVL -447 73 1 24 0 0 0 chr3 184143086 184143110 -33894048 + GC_rich Low_complexity Low_complexity 1 24 0 454 186 113 24 chr3 184143888 184143989 -33893169 + MER58B DNA MER1_type 193 308 -2112 2176 146 14 3 chr3 184143989 184144346 -33892812 + MER46B DNA MER2_type 1 236 0 454 186 113 24 chr3 184144346 184144368 -33892790 + MER58B DNA MER1_type 308 327 -14 21 0 0 0 chr3 184145262 184145283 -33891875 + AT_rich Low_complexity Low_complexity 1 21 0 1033 256 157 3 chr3 184145430 184145743 -33891415 + MLT1G LTR MaLR 10 370 -220 377 250 0 0 chr3 184145872 184145960 -33891198 + Charlie2 DNA MER1_type 221 308 -2474 2164 191 207 34 chr3 184145978 184146810 -33890348 + Charlie2 DNA MER1_type 1883 2858 -4 45 45 0 0 chr3 184147175 184147241 -33889917 + GC_rich Low_complexity Low_complexity 1 66 0 1180 206 36 0 chr3 184147527 184147746 -33889412 + AluJb SINE Alu 55 281 -31 192 40 0 0 chr3 184147750 184147775 -33889383 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 672 165 4 98 chr3 184147968 184148204 -33888954 - AluSq SINE Alu -8 305 92 246 62 0 0 chr3 184148503 184148535 -33888623 + (T)n Simple_repeat Simple_repeat 1 32 0 826 252 156 17 chr3 184149103 184149405 -33887753 - MER2 DNA MER2_type 0 344 1 515 206 8 30 chr3 184149432 184149563 -33887595 - FLAM_C SINE Alu -5 128 1 1762 170 30 21 chr3 184150068 184150403 -33886755 - MER2 DNA MER2_type -7 338 1 3615 216 84 77 chr3 184150403 184150667 -33886491 - L1M4 LINE L1 -2113 4033 3772 276 56 0 56 chr3 184150667 184150721 -33886437 + (TA)n Simple_repeat Simple_repeat 1 51 0 3615 216 84 77 chr3 184150721 184152150 -33885008 - L1M4 LINE L1 -2374 3772 2329 2178 118 49 29 chr3 184152155 184152502 -33884656 + THE1B LTR MaLR 11 364 0 5765 92 3 0 chr3 184152502 184153264 -33883894 + THE1B-int LTR MaLR 1 764 -816 362 328 138 25 chr3 184153721 184154047 -33883111 + L1MC4 LINE L1 4686 5048 -1098 800 293 90 32 chr3 184154231 184154764 -33882394 + L1MC4 LINE L1 5325 5888 -1920 4343 196 59 20 chr3 184154804 184155790 -33881368 + L1MC1 LINE L1 40 1063 -5363 5089 105 65 78 chr3 184155790 184156915 -33880243 + pTR5 LTR ERV1 743 2021 -417 301 267 10 0 chr3 184156916 184157017 -33880141 + LTR30 LTR ERV1 541 642 -80 1327 120 24 5 chr3 184157020 184157229 -33879929 + pTR5 LTR ERV1 172 384 -2054 795 114 0 0 chr3 184157229 184157343 -33879815 + L1MCa LINE L1 1052 1165 -5261 325 111 19 0 chr3 184157402 184157456 -33879702 - MLT2A2 LTR ERVL 0 453 399 307 237 79 0 chr3 184157459 184157535 -33879623 + L1MC4 LINE L1 6614 6695 -1347 2950 83 17 15 chr3 184157538 184157945 -33879213 - MLT2A2 LTR ERVL -45 408 1 2295 195 42 76 chr3 184157945 184158534 -33878624 + LTR9 LTR ERV1 44 612 0 3578 245 76 17 chr3 184158539 184159712 -33877446 + L1MC1 LINE L1 1163 2444 -3982 7319 212 50 19 chr3 184159738 184160157 -33877001 + L1MC1 LINE L1 3221 3625 -2988 2136 97 24 0 chr3 184160157 184160277 -33876881 + AluY SINE Alu 3 119 -192 351 0 0 0 chr3 184160277 184160316 -33876842 + (CA)n Simple_repeat Simple_repeat 2 40 0 2136 97 24 0 chr3 184160316 184160485 -33876673 + AluY SINE Alu 119 299 -12 7319 212 50 19 chr3 184160485 184163260 -33873898 + L1MC1 LINE L1 3625 6526 -87 210 71 0 0 chr3 184163260 184163288 -33873870 + (TATG)n Simple_repeat Simple_repeat 1 28 0 7319 212 50 19 chr3 184163288 184163362 -33873796 + L1MC1 LINE L1 6526 6596 -17 5046 230 45 30 chr3 184163387 184164672 -33872486 + L1MCa LINE L1 3152 4472 -1954 1858 180 0 0 chr3 184164672 184164978 -33872180 + AluJb SINE Alu 1 306 -6 5046 230 45 30 chr3 184164978 184165389 -33871769 + L1MCa LINE L1 4472 4875 -1551 4016 170 35 10 chr3 184166176 184167447 -33869711 - L1MA4 LINE L1 -483 5817 4504 2398 152 44 4 chr3 184167448 184167902 -33869256 + L1MA4 LINE L1 5829 6300 0 255 196 22 87 chr3 184169032 184169124 -33868034 + L2 LINE L2 3214 3299 -14 384 252 70 35 chr3 184170186 184170301 -33866857 - MIR3 SINE MIR -52 156 38 845 314 187 30 chr3 184171124 184171818 -33865340 + L2 LINE L2 1187 1989 -1325 312 259 0 72 chr3 184171817 184171956 -33865202 - L2 LINE L2 -80 3233 3105 * 552 324 63 25 chr3 184171932 184172170 -33864988 - L2 LINE L2 -339 2975 2729 289 323 116 30 chr3 184172278 184172476 -33864682 + L2 LINE L2 2236 2450 -864 21 0 0 0 chr3 184172623 184172644 -33864514 + AT_rich Low_complexity Low_complexity 1 21 0 234 0 0 0 chr3 184173335 184173361 -33863797 + (TA)n Simple_repeat Simple_repeat 1 26 0 2552 68 0 0 chr3 184173367 184173678 -33863480 - AluY SINE Alu 0 311 1 266 316 8 68 chr3 184174438 184174571 -33862587 - Charlie8 DNA MER1_type -2153 264 140 534 302 5 54 chr3 184174571 184174776 -33862382 - L2 LINE L2 -14 3299 3105 * 1283 318 117 46 chr3 184174752 184175713 -33861445 - L2 LINE L2 -339 2975 1947 1763 243 78 34 chr3 184175785 184176349 -33860809 - L1ME1 LINE L1 -27 6139 5551 217 240 52 73 chr3 184176485 184176581 -33860577 - MIR3 SINE MIR -51 157 64 1829 169 3 13 chr3 184176698 184177011 -33860147 - AluJb SINE Alu -2 310 1 283 293 49 0 chr3 184177050 184177132 -33860026 + MIR SINE MIR 48 133 -129 189 351 13 0 chr3 184177247 184177324 -33859834 + MIR3 SINE MIR 98 175 -33 231 306 0 14 chr3 184180064 184180136 -33857022 + CT-rich Low_complexity Low_complexity 3 73 0 1636 190 29 0 chr3 184180383 184180662 -33856496 + AluJo SINE Alu 1 287 -25 992 179 0 6 chr3 184181904 184182066 -33855092 - AluJb SINE Alu -15 297 137 377 277 112 38 chr3 184183668 184183868 -33853290 + MIR SINE MIR 42 262 0 21 71 0 0 chr3 184184338 184184380 -33852778 + AT_rich Low_complexity Low_complexity 1 42 0 2440 39 0 3 chr3 184185030 184185348 -33851810 - AluY SINE Alu 0 317 1 1019 244 47 45 chr3 184187502 184187903 -33849255 + L1ME3 LINE L1 5744 6145 -17 188 39 59 59 chr3 184189890 184189941 -33847217 + A-rich Low_complexity Low_complexity 4 54 0 23 54 0 0 chr3 184189959 184189996 -33847162 + AT_rich Low_complexity Low_complexity 1 37 0 845 145 0 0 chr3 184190326 184190450 -33846708 + FLAM_C SINE Alu 1 124 -19 204 324 0 15 chr3 184192519 184192587 -33844571 + GA-rich Low_complexity Low_complexity 2 68 0 309 272 134 36 chr3 184193231 184193455 -33843703 - L2 LINE L2 -384 2930 2685 1697 204 40 8 chr3 184194325 184194677 -33842481 - MLT1A1 LTR MaLR 0 365 3 1764 193 133 7 chr3 184195434 184195849 -33841309 - MLT1C LTR MaLR 0 467 1 286 268 63 47 chr3 184197281 184197408 -33839750 - MIR SINE MIR -37 225 97 338 299 123 63 chr3 184197859 184198193 -33838965 + L2 LINE L2 2960 3313 0 327 49 0 0 chr3 184199387 184199428 -33837730 + (A)n Simple_repeat Simple_repeat 1 41 0 368 294 163 11 chr3 184199699 184199883 -33837275 + MIR SINE MIR 9 220 -42 351 0 0 0 chr3 184200574 184200613 -33836545 + (CA)n Simple_repeat Simple_repeat 1 39 0 908 253 113 56 chr3 184200946 184201463 -33835695 - MLT1H LTR MaLR 0 595 1 456 216 37 56 chr3 184203188 184203350 -33833808 + L1ME4a LINE L1 5698 5856 -265 415 222 135 34 chr3 184203369 184203576 -33833582 + L1ME4a LINE L1 5894 6121 0 657 195 90 40 chr3 184204069 184204269 -33832889 + MER63A DNA MER1_type 1 210 0 249 159 0 0 chr3 184204714 184204758 -33832400 + A-rich Low_complexity Low_complexity 1 44 0 2041 89 86 0 chr3 184206244 184206524 -33830634 + AluSx SINE Alu 1 304 -8 28 0 0 0 chr3 184206578 184206606 -33830552 + AT_rich Low_complexity Low_complexity 1 28 0 504 310 47 18 chr3 184206676 184206847 -33830311 - MIR SINE MIR -16 246 71 2215 110 0 3 chr3 184207319 184207620 -33829538 + AluSx SINE Alu 1 300 -12 3662 124 2 13 chr3 184208345 184208875 -33828283 + MER1A DNA MER1_type 2 525 -2 23 54 0 0 chr3 184208963 184209000 -33828158 + AT_rich Low_complexity Low_complexity 1 37 0 2049 113 94 60 chr3 184209056 184209117 -33828041 - LTR7 LTR ERV1 0 450 393 1975 113 25 0 chr3 184209117 184209423 -33827735 - AluY SINE Alu 0 313 1 2049 113 94 60 chr3 184209423 184209795 -33827363 - LTR7 LTR ERV1 -57 393 1 242 389 30 15 chr3 184209795 184209926 -33827232 - L2 LINE L2 -229 3043 2911 532 309 69 18 chr3 184210676 184210893 -33826265 + MIR SINE MIR 8 235 -27 559 290 54 27 chr3 184211138 184211324 -33825834 - MIR SINE MIR -69 193 3 354 353 8 0 chr3 184211813 184211935 -33825223 + Charlie8 DNA MER1_type 143 265 -2152 2093 115 14 0 chr3 184212504 184212792 -33824366 + AluSc SINE Alu 1 292 -17 292 218 0 0 chr3 184213028 184213083 -33824075 + HsTC2 DNA Tc2 28 82 -1816 36 77 0 0 chr3 184213903 184213981 -33823177 + AT_rich Low_complexity Low_complexity 1 78 0 22 35 0 0 chr3 184214394 184214423 -33822735 + AT_rich Low_complexity Low_complexity 1 29 0 242 347 41 20 chr3 184215160 184215258 -33821900 + MIR SINE MIR 84 183 -79 379 263 122 56 chr3 184216443 184216656 -33820502 - MLT1H LTR MaLR -10 539 313 * 989 207 5 5 chr3 184216628 184216826 -33820332 - MLT1H LTR MaLR -344 205 8 2312 115 0 0 chr3 184217009 184217322 -33819836 + AluSq SINE Alu 1 313 0 283 212 24 0 chr3 184217499 184217584 -33819574 + (TATATG)n Simple_repeat Simple_repeat 2 88 0 1165 224 94 74 chr3 184218378 184218975 -33818183 + L1M4 LINE L1 3924 4532 -1614 438 311 72 29 chr3 184219061 184219367 -33817791 + L1M4 LINE L1 4663 4981 -1165 598 269 18 42 chr3 184220098 184220265 -33816893 + MIR SINE MIR 12 174 -88 921 141 16 8 chr3 184220952 184221216 -33815942 + CT-rich Low_complexity Low_complexity 1 266 0 520 208 6 11 chr3 184221230 184221408 -33815750 + CT-rich Low_complexity Low_complexity 2 178 0 912 178 14 3 chr3 184221422 184222058 -33815100 + CT-rich Low_complexity Low_complexity 1 643 0 893 158 6 0 chr3 184222071 184222248 -33814910 + CT-rich Low_complexity Low_complexity 3 180 0 250 221 15 15 chr3 184222730 184222798 -33814360 + CT-rich Low_complexity Low_complexity 2 69 0 277 251 6 12 chr3 184222850 184223013 -33814145 + CT-rich Low_complexity Low_complexity 2 163 0 858 171 20 0 chr3 184223089 184223392 -33813766 + CT-rich Low_complexity Low_complexity 1 309 0 647 205 0 12 chr3 184223414 184223575 -33813583 + CT-rich Low_complexity Low_complexity 2 160 0 998 128 6 0 chr3 184223580 184223752 -33813406 + (TCC)n Simple_repeat Simple_repeat 3 175 0 353 176 14 0 chr3 184223767 184223841 -33813317 + CT-rich Low_complexity Low_complexity 2 76 0 820 212 33 11 chr3 184225170 184225354 -33811804 + MER5A DNA MER1_type 2 189 0 297 276 32 76 chr3 184225837 184226022 -33811136 - Charlie8 DNA MER1_type -2152 265 89 212 158 26 0 chr3 184226236 184226274 -33810884 + CT-rich Low_complexity Low_complexity 3 41 0 452 122 12 0 chr3 184226276 184226358 -33810800 - L1 LINE L1 -1481 4665 4583 2715 155 19 21 chr3 184227299 184227776 -33809382 - MER44D DNA MER2_type 0 605 75 13525 201 30 19 chr3 184227815 184229654 -33807504 - L1MA4 LINE L1 -12 6470 4653 1837 89 0 4 chr3 184229654 184229915 -33807243 - AluY SINE Alu 0 309 50 2394 66 0 0 chr3 184229915 184230201 -33806957 - AluY SINE Alu -24 287 1 13525 201 30 19 chr3 184230201 184231041 -33806117 - L1MA4 LINE L1 -1829 4653 3824 2195 117 0 0 chr3 184231041 184231350 -33805808 - AluSx SINE Alu 0 309 1 13525 201 30 19 chr3 184231350 184234910 -33802248 - L1MA4 LINE L1 -2658 3824 126 1739 173 0 3 chr3 184234910 184235194 -33801964 - AluJb SINE Alu -29 283 1 13525 201 30 19 chr3 184235194 184235309 -33801849 - L1MA4 LINE L1 -6356 126 14 471 241 0 0 chr3 184235316 184235399 -33801759 - MER44D DNA MER2_type -622 83 1 564 172 0 0 chr3 184235584 184235677 -33801481 - L1M3f LINE L1 -4864 464 372 598 173 65 72 chr3 184236511 184236650 -33800508 - L1M3f LINE L1 -4946 382 245 256 396 0 9 chr3 184237074 184237180 -33799978 + MER5A DNA MER1_type 35 139 -50 339 325 58 22 chr3 184238389 184238700 -33798458 - L1ME2 LINE L1 -280 5884 5563 702 253 30 76 chr3 184238851 184239348 -33797810 - L2 LINE L2 -35 3278 2707 2119 114 0 10 chr3 184239384 184239681 -33797477 + AluSc SINE Alu 1 294 -15 672 316 72 22 chr3 184242774 184243220 -33793938 - L1MC4a LINE L1 -1914 5894 5427 21 71 0 0 chr3 184243432 184243474 -33793684 + AT_rich Low_complexity Low_complexity 1 42 0 257 172 35 35 chr3 184244392 184244479 -33792679 + T-rich Low_complexity Low_complexity 6 92 0 2059 113 3 7 chr3 184246697 184246989 -33790169 + AluSx SINE Alu 17 307 -5 4147 114 48 1 chr3 184246992 184247678 -33789480 + L1PBa LINE L1 1976 2693 -4170 255 105 0 0 chr3 184247678 184247716 -33789442 + AluSp SINE Alu 1 38 -262 335 224 120 72 chr3 184247819 184247839 -33789319 + L1MC4a LINE L1 5806 5824 -1984 2625 42 0 3 chr3 184247839 184248148 -33789010 + AluY SINE Alu 1 308 -3 335 224 120 72 chr3 184248148 184248252 -33788906 + L1MC4a LINE L1 5824 5936 -1872 23 0 0 0 chr3 184248255 184248278 -33788880 + AT_rich Low_complexity Low_complexity 1 23 0 336 275 174 6 chr3 184248284 184248451 -33788707 + L1MC5 LINE L1 7485 7679 -282 26 0 0 0 chr3 184248705 184248731 -33788427 + AT_rich Low_complexity Low_complexity 1 26 0 668 325 69 20 chr3 184249132 184249581 -33787577 - L1MC4a LINE L1 -1911 5897 5427 21 71 0 0 chr3 184249793 184249835 -33787323 + AT_rich Low_complexity Low_complexity 1 42 0 248 181 12 36 chr3 184250752 184250835 -33786323 + (TTTG)n Simple_repeat Simple_repeat 2 82 0 2066 98 4 0 chr3 184253054 184253356 -33783802 + AluSp SINE Alu 17 319 0 1865 108 11 0 chr3 184253371 184253639 -33783519 + AluSq SINE Alu 42 312 -1 21 0 0 0 chr3 184256453 184256474 -33780684 + AT_rich Low_complexity Low_complexity 1 21 0 679 278 71 5 chr3 184256731 184256929 -33780229 + MIR SINE MIR 49 259 -3 23 0 0 0 chr3 184257230 184257253 -33779905 + AT_rich Low_complexity Low_complexity 1 23 0 1862 123 11 11 chr3 184258522 184258807 -33778351 - AluSq SINE Alu -28 285 1 256 353 0 12 chr3 184258817 184258902 -33778256 + L2 LINE L2 3229 3312 -1 231 255 0 0 chr3 184258993 184259044 -33778114 + CT-rich Low_complexity Low_complexity 4 54 0 189 311 61 61 chr3 184259052 184259184 -33777974 - L2 LINE L2 -14 3299 3168 350 308 63 28 chr3 184259391 184259534 -33777624 + MIR3 SINE MIR 12 159 -49 24 85 0 0 chr3 184259592 184259651 -33777507 + AT_rich Low_complexity Low_complexity 1 59 0 189 0 0 0 chr3 184259750 184259799 -33777359 + (CA)n Simple_repeat Simple_repeat 1 49 0 263 196 0 0 chr3 184259873 184259924 -33777234 - L1MC4 LINE L1 -1340 6702 6652 182 280 54 54 chr3 184259924 184260017 -33777141 + MER5B DNA MER1_type 60 152 -26 1964 184 149 31 chr3 184262558 184263008 -33774150 + MLT1D LTR MaLR 3 505 0 539 40 0 0 chr3 184263020 184263094 -33774064 + L1PB1 LINE L1 6077 6150 -1 23 0 0 0 chr3 184263095 184263118 -33774040 + AT_rich Low_complexity Low_complexity 1 23 0 2560 64 0 0 chr3 184263493 184263804 -33773354 - AluY SINE Alu 0 311 1 302 273 155 72 chr3 184263858 184264122 -33773036 + L2 LINE L2 3027 3312 -1 351 289 51 47 chr3 184264925 184265138 -33772020 - MIR SINE MIR -38 224 16 313 271 71 0 chr3 184269700 184269785 -33767373 - L1MC4 LINE L1 -1337 6705 6615 308 333 0 0 chr3 184269770 184269860 -33767298 + L1MC4 LINE L1 6614 6703 -1339 * 300 238 125 0 chr3 184269832 184269912 -33767246 - L1MC4 LINE L1 -1339 6703 6614 * 317 315 0 0 chr3 184269922 184270011 -33767147 - L1MC4 LINE L1 -1339 6703 6615 331 311 0 0 chr3 184270020 184270110 -33767048 - L1MC4 LINE L1 -1339 6703 6614 231 204 0 0 chr3 184270114 184270163 -33766995 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 327 298 21 0 chr3 184270164 184270258 -33766900 - L1MC4 LINE L1 -1339 6703 6608 294 287 63 21 chr3 184272753 184272896 -33764262 + L1ME3A LINE L1 5991 6139 -31 2403 68 3 0 chr3 184272926 184273222 -33763936 + AluY SINE Alu 1 297 -14 23 33 0 0 chr3 184273849 184273879 -33763279 + AT_rich Low_complexity Low_complexity 1 30 0 343 192 67 8 chr3 184274118 184274238 -33762920 + (TA)n Simple_repeat Simple_repeat 1 127 0 226 227 30 0 chr3 184274242 184274308 -33762850 + L1MCa LINE L1 1986 2053 -4373 2382 75 0 0 chr3 184274993 184275301 -33761857 + AluY SINE Alu 1 308 -3 198 0 0 0 chr3 184275856 184275878 -33761280 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 269 115 0 19 chr3 184275972 184276024 -33761134 + (CA)n Simple_repeat Simple_repeat 2 52 0 200 297 0 0 chr3 184276572 184276636 -33760522 + A-rich Low_complexity Low_complexity 1 64 0 476 280 28 68 chr3 184277020 184277270 -33759888 + HAL1b LINE L1 632 871 -477 6324 209 72 101 chr3 184277600 184277765 -33759393 + L1MC4a LINE L1 31 199 -6341 180 0 0 0 chr3 184277765 184277785 -33759373 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 6324 209 72 101 chr3 184277785 184280042 -33757116 + L1MC4a LINE L1 199 2382 -4158 4853 204 33 3 chr3 184280042 184281019 -33756139 - THE1C-int LTR MaLR -645 1006 1 1743 146 50 53 chr3 184281019 184281395 -33755763 - THE1C LTR MaLR 0 375 1 1471 265 137 10 chr3 184281396 184282067 -33755091 + L1MC4a LINE L1 3694 4449 -2091 212 147 0 0 chr3 184282978 184283012 -33754146 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 1681 211 3 0 chr3 184283061 184283365 -33753793 - AluJo SINE Alu -5 307 3 404 294 152 28 chr3 184283443 184283865 -33753293 + L1MC4a LINE L1 5777 6250 -1952 224 32 95 16 chr3 184284021 184284084 -33753074 + (TA)n Simple_repeat Simple_repeat 1 68 0 249 263 153 29 chr3 184284202 184284339 -33752819 - L2 LINE L2 0 3313 3160 22 35 0 0 chr3 184284345 184284374 -33752784 + AT_rich Low_complexity Low_complexity 1 29 0 324 0 0 0 chr3 184284465 184284501 -33752657 + (TG)n Simple_repeat Simple_repeat 2 37 0 180 340 19 0 chr3 184285279 184285332 -33751826 + MIR SINE MIR 49 102 -160 451 317 37 6 chr3 184285469 184285633 -33751525 + MIR SINE MIR 35 203 -59 358 308 23 8 chr3 184285745 184285878 -33751280 + Charlie8 DNA MER1_type 56 190 -2227 2045 81 0 127 chr3 184286027 184286374 -33750784 - AluSc SINE Alu -4 305 3 736 244 56 5 chr3 184287478 184287691 -33749467 + MER58A DNA MER1_type 1 224 0 754 210 155 0 chr3 184287844 184288025 -33749133 - MER3 DNA MER1_type 0 209 1 616 182 88 40 chr3 184288390 184288473 -33748685 - MER5B DNA MER1_type -3 175 81 1082 217 94 60 chr3 184288473 184288856 -33748302 + MSTD LTR MaLR 1 396 0 616 182 88 40 chr3 184288856 184288920 -33748238 - MER5B DNA MER1_type -97 81 21 786 145 99 29 chr3 184289135 184289307 -33747851 + MER5A DNA MER1_type 1 184 -5 2102 108 0 10 chr3 184289353 184289649 -33747509 - AluSq SINE Alu -20 293 1 23 54 0 0 chr3 184289791 184289828 -33747330 + AT_rich Low_complexity Low_complexity 1 37 0 2493 68 0 3 chr3 184291012 184291320 -33745838 + AluY SINE Alu 1 307 -4 297 326 112 58 chr3 184291652 184291894 -33745264 + MIR SINE MIR 8 262 0 337 347 98 5 chr3 184292113 184292306 -33744852 + L2 LINE L2 3103 3313 0 27 0 0 0 chr3 184293327 184293354 -33743804 + AT_rich Low_complexity Low_complexity 1 27 0 280 290 0 0 chr3 184295025 184295087 -33742071 - L2 LINE L2 -6 3307 3246 602 232 129 0 chr3 184295217 184295372 -33741786 - MER45A DNA AcHobo -1 177 3 676 236 44 13 chr3 184295736 184295965 -33741193 - L1ME3 LINE L1 -31 6131 5896 303 326 68 15 chr3 184296015 184296147 -33741011 - MIR SINE MIR -71 191 53 386 270 112 38 chr3 184296998 184297198 -33739960 - MIR SINE MIR 0 262 42 1000 179 0 6 chr3 184298800 184298962 -33738196 + AluJb SINE Alu 137 297 -15 2264 111 0 0 chr3 184300192 184300490 -33736668 - AluSx SINE Alu -14 298 1 1463 207 96 32 chr3 184300674 184301113 -33736045 + MLT1C LTR MaLR 1 467 0 2315 97 3 0 chr3 184302321 184302619 -33734539 - AluSx SINE Alu -12 300 2 514 212 124 0 chr3 184302866 184302979 -33734179 - L2 LINE L2 0 3313 3187 1372 167 31 0 chr3 184302989 184303216 -33733942 - AluJo SINE Alu -14 298 65 638 289 23 38 chr3 184303452 184303847 -33733311 - L1ME4a LINE L1 -188 5933 5545 522 0 0 0 chr3 184303863 184303921 -33733237 + (CA)n Simple_repeat Simple_repeat 1 58 0 1290 189 39 9 chr3 184303942 184304175 -33732983 + AluJb SINE Alu 52 291 -21 26 30 0 0 chr3 184304216 184304249 -33732909 + AT_rich Low_complexity Low_complexity 1 33 0 3169 77 31 0 chr3 184304249 184304693 -33732465 - L1MA1 LINE L1 -7 6295 5838 383 275 65 47 chr3 184304698 184304944 -33732214 - L1ME4a LINE L1 -703 5418 5164 300 304 40 24 chr3 184304961 184305086 -33732072 - MIR SINE MIR -2 260 134 1578 204 98 14 chr3 184305101 184305459 -33731699 - MSTD LTR MaLR 0 396 9 1908 126 8 0 chr3 184305657 184305919 -33731239 + AluSx SINE Alu 19 282 -30 869 125 0 29 chr3 184306539 184306675 -33730483 + FLAM_C SINE Alu 2 133 0 306 0 0 0 chr3 184306676 184306710 -33730448 + (TA)n Simple_repeat Simple_repeat 2 35 0 329 238 24 79 chr3 184306879 184307005 -33730153 - MIR SINE MIR -71 191 73 664 291 36 10 chr3 184307666 184307862 -33729296 + MIR SINE MIR 1 201 -61 239 208 52 13 chr3 184307891 184307968 -33729190 - HsTC2 DNA Tc2 -1812 86 7 311 256 90 0 chr3 184309357 184309435 -33727723 + L2 LINE L2 3185 3269 -3 24 0 0 0 chr3 184309507 184309531 -33727627 + AT_rich Low_complexity Low_complexity 1 24 0 216 97 0 0 chr3 184309801 184309832 -33727326 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 282 233 0 58 chr3 184309925 184310011 -33727147 - MER5C DNA MER1_type 0 324 244 401 240 16 33 chr3 184310043 184310164 -33726994 - MER5C DNA MER1_type -204 120 2 1302 150 7 92 chr3 184310641 184310934 -33726224 + L1MC1 LINE L1 6050 6317 -16 1581 199 78 87 chr3 184310972 184311521 -33725637 - MLT1E1 LTR MaLR -100 554 11 3504 214 60 16 chr3 184311553 184313175 -33723983 - L1MB5 LINE L1 -29 6145 4451 506 279 0 0 chr3 184313224 184313335 -33723823 + FLAM_A SINE Alu 1 111 -31 23 33 0 0 chr3 184313336 184313366 -33723792 + AT_rich Low_complexity Low_complexity 1 30 0 488 182 172 42 chr3 184313367 184313559 -33723599 - L1MB5 LINE L1 -1720 4426 4210 4856 113 11 1 chr3 184313688 184314438 -33722720 - Tigger1 DNA MER2_type -511 1907 1151 2207 98 3 20 chr3 184314439 184314744 -33722414 + AluSx SINE Alu 1 300 -12 1643 97 0 0 chr3 184314781 184314987 -33722171 + AluSg/x SINE Alu 86 291 -21 532 237 22 0 chr3 184314989 184315128 -33722030 + L1MC4 LINE L1 7901 8042 0 21 0 0 0 chr3 184315935 184315956 -33721202 + AT_rich Low_complexity Low_complexity 1 21 0 946 289 24 24 chr3 184316154 184316528 -33720630 + L1MC/D LINE L1 5255 5628 -2180 2058 101 35 3 chr3 184316537 184316824 -33720334 - AluSq SINE Alu -17 296 1 289 197 15 0 chr3 184317631 184317697 -33719461 + L1MA3 LINE L1 6239 6305 0 2357 104 0 0 chr3 184318387 184318694 -33718464 - AluSx SINE Alu -5 307 1 21 0 0 0 chr3 184319028 184319049 -33718109 + AT_rich Low_complexity Low_complexity 1 21 0 453 306 25 6 chr3 184320172 184320329 -33716829 + MIR SINE MIR 102 261 -1 257 214 308 0 chr3 184320342 184320459 -33716699 - MIR SINE MIR -13 249 97 708 205 34 10 chr3 184320508 184320801 -33716357 + CT-rich Low_complexity Low_complexity 1 300 0 2017 246 45 9 chr3 184321370 184322057 -33715101 + L1 LINE L1 2978 3689 -2457 1093 129 6 6 chr3 184322058 184322221 -33714937 + AluSg/x SINE Alu 131 293 -19 2142 135 0 0 chr3 184322236 184322533 -33714625 + AluJb SINE Alu 1 297 -15 1854 77 0 8 chr3 184322849 184323108 -33714050 + L1P2 LINE L1 5532 5788 -366 498 257 91 25 chr3 184323337 184323578 -33713580 + L1MC5 LINE L1 7253 7509 -452 8318 144 13 24 chr3 184323610 184325102 -33712056 + L1P LINE L1 11 1486 -4660 6666 57 34 0 chr3 184325219 184326279 -33710879 + L1PA6 LINE L1 5065 6154 0 2420 80 3 0 chr3 184326296 184326595 -33710563 + AluSg SINE Alu 1 300 -10 4367 157 41 14 chr3 184326601 184327447 -33709711 - L1MD1 LINE L1 -64 6178 5310 299 178 147 38 chr3 184327481 184327638 -33709520 - L1MD1 LINE L1 -983 5163 4990 1284 135 96 5 chr3 184327800 184328008 -33709150 - AluJo SINE Alu -85 227 1 1031 174 41 0 chr3 184328033 184328229 -33708929 + MER3 DNA MER1_type 6 209 0 1855 121 18 4 chr3 184328269 184328579 -33708579 - AluSx SINE Alu 0 314 1 279 298 90 84 chr3 184328630 184329117 -33708041 - L1MC4a LINE L1 -1693 6115 5626 1090 86 0 14 chr3 184329120 184329259 -33707899 + AluSq/x SINE Alu 1 137 -176 2262 121 0 0 chr3 184329260 184329567 -33707591 + AluSg SINE Alu 1 307 -3 390 222 90 69 chr3 184330110 184330193 -33706965 + MLT1H LTR MaLR 23 112 -437 2245 127 0 0 chr3 184330193 184330485 -33706673 - AluSc SINE Alu -17 292 1 390 222 90 69 chr3 184330485 184330545 -33706613 + MLT1H LTR MaLR 112 169 -380 1568 138 7 11 chr3 184331149 184331424 -33705734 - LOR1a LTR ERV1 -223 274 1 605 207 7 0 chr3 184331427 184331562 -33705596 + LTR16A1 LTR ERVL 313 448 -9 190 295 147 11 chr3 184331707 184331802 -33705356 + MIR SINE MIR 88 195 -67 1253 163 0 10 chr3 184332267 184332497 -33704661 + AluJo SINE Alu 85 312 0 1683 185 30 7 chr3 184332512 184332815 -33704343 + AluJb SINE Alu 1 310 -2 202 306 0 0 chr3 184333406 184333468 -33703690 - L2 LINE L2 -1 3312 3251 209 211 53 0 chr3 184333949 184334006 -33703152 + (TATATG)n Simple_repeat Simple_repeat 3 62 0 277 308 19 28 chr3 184334157 184334264 -33702894 - MIR SINE MIR -16 246 141 266 0 182 0 chr3 184334265 184334309 -33702849 + MADE1 DNA Mariner 28 79 -1 371 327 18 9 chr3 184334313 184334423 -33702735 - MIR SINE MIR -135 127 17 23 0 0 0 chr3 184334487 184334510 -33702648 + AT_rich Low_complexity Low_complexity 1 23 0 1680 130 35 47 chr3 184335214 184335552 -33701606 - MER1B DNA MER1_type 0 337 4 14524 53 7 1 chr3 184335699 184337671 -33699487 - L1P LINE L1 -1515 4631 2649 219 139 56 74 chr3 184337671 184337779 -33699379 + (GGGTG)n Simple_repeat Simple_repeat 3 108 0 180 250 0 0 chr3 184337862 184337926 -33699232 + C-rich Low_complexity Low_complexity 2 65 0 269 309 0 0 chr3 184337958 184338039 -33699119 + C-rich Low_complexity Low_complexity 1 81 0 2183 108 0 0 chr3 184338366 184338663 -33698495 + AluSc SINE Alu 1 297 -12 207 232 0 0 chr3 184340842 184340898 -33696260 + (TG)n Simple_repeat Simple_repeat 1 56 0 346 284 28 81 chr3 184340900 184341111 -33696047 - HAL1 LINE L1 -7 2500 2301 1455 147 120 41 chr3 184341894 184342235 -33694923 - THE1C LTR MaLR 0 375 8 408 250 31 62 chr3 184343220 184343348 -33693810 + L2 LINE L2 3190 3313 0 241 339 105 29 chr3 184343604 184343775 -33693383 - L3 LINE CR1 -1 1576 1393 2203 84 4 0 chr3 184345643 184345918 -33691240 + AluSp SINE Alu 17 292 -21 410 298 35 6 chr3 184346007 184346178 -33690980 + MER113 DNA MER1_type? 328 503 -18 287 208 30 10 chr3 184346803 184346904 -33690254 + Charlie2 DNA MER1_type 2672 2774 -88 1390 174 13 8 chr3 184346904 184347140 -33690018 + AluJo SINE Alu 1 237 -75 240 35 0 0 chr3 184347319 184347348 -33689810 + (A)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr3 184347458 184347488 -33689670 + AT_rich Low_complexity Low_complexity 1 30 0 1445 183 41 8 chr3 184348134 184348500 -33688658 - L1 LINE L1 -2578 3568 3191 2377 150 44 4 chr3 184348628 184349080 -33688078 - L1MA4 LINE L1 -2 6298 5829 3252 176 42 11 chr3 184349081 184350344 -33686814 + L1MA4 LINE L1 4504 5817 -483 27 0 0 0 chr3 184351088 184351115 -33686043 + AT_rich Low_complexity Low_complexity 1 27 0 203 161 0 0 chr3 184351374 184351405 -33685753 + T-rich Low_complexity Low_complexity 4 34 0 208 200 11 147 chr3 184352194 184352289 -33684869 + MIR SINE MIR 108 189 -73 220 321 92 15 chr3 184352871 184353002 -33684156 - MIR SINE MIR -65 197 57 1027 222 9 0 chr3 184353151 184353367 -33683791 + MLT1A1 LTR MaLR 139 356 -9 420 281 74 68 chr3 184354180 184354547 -33682611 + HAL1 LINE L1 532 900 -1607 1077 38 0 0 chr3 184354617 184354750 -33682408 + AluY SINE Alu 171 303 -8 258 306 45 30 chr3 184354765 184354964 -33682194 + HAL1 LINE L1 967 1168 -1339 1825 140 4 4 chr3 184354964 184355242 -33681916 + AluSx SINE Alu 1 278 -34 1124 274 70 4 chr3 184356751 184357237 -33679921 + MER113 DNA MER1_type? 4 521 0 1212 192 5 5 chr3 184357600 184357814 -33679344 + AluJb SINE Alu 87 300 -12 191 318 12 12 chr3 184357976 184358061 -33679097 + MIR3 SINE MIR 92 176 -32 921 152 11 7 chr3 184358709 184359265 -33677893 + CT-rich Low_complexity Low_complexity 1 558 0 621 168 5 32 chr3 184359294 184359479 -33677679 + CT-rich Low_complexity Low_complexity 1 180 0 858 195 14 19 chr3 184359493 184359878 -33677280 + CT-rich Low_complexity Low_complexity 1 383 0 460 308 37 18 chr3 184360091 184360390 -33676768 + L1MC4a LINE L1 5603 5911 -210 9128 43 3 0 chr3 184361974 184363163 -33673995 + L1P LINE L1 3525 4717 -1429 218 286 143 11 chr3 184363738 184363829 -33673329 - MER5A DNA MER1_type -83 106 4 373 235 140 29 chr3 184364314 184364450 -33672708 - L2 LINE L2 -3 3269 3119 228 290 153 0 chr3 184364542 184364666 -33672492 - L2 LINE L2 -321 2951 2809 24 0 0 0 chr3 184364890 184364914 -33672244 + AT_rich Low_complexity Low_complexity 1 24 0 1356 256 0 3 chr3 184365062 184365371 -33671787 - AluSx SINE Alu -4 308 1 218 271 106 60 chr3 184365912 184366063 -33671095 + MIR SINE MIR 73 230 -32 314 102 0 0 chr3 184366243 184366292 -33670866 + MLT2A2 LTR ERVL 1 49 -404 370 194 28 0 chr3 184366293 184366365 -33670793 + L2 LINE L2 3209 3282 -31 1208 148 16 0 chr3 184366973 184367162 -33669996 + AluSc SINE Alu 104 295 -14 350 258 11 84 chr3 184367244 184367434 -33669724 + CT-rich Low_complexity Low_complexity 2 177 0 519 269 59 21 chr3 184367565 184367751 -33669407 - L1MDb LINE L1 -5442 967 775 413 262 114 7 chr3 184370760 184370909 -33666249 - MER104 DNA Tc2 0 180 16 220 315 37 28 chr3 184370971 184371079 -33666079 - MIR SINE MIR -50 212 104 23 33 0 0 chr3 184371079 184371109 -33666049 + AT_rich Low_complexity Low_complexity 1 30 0 310 252 54 68 chr3 184371776 184371923 -33665235 + L2 LINE L2 3169 3313 0 318 318 0 9 chr3 184373281 184373391 -33663767 + C-rich Low_complexity Low_complexity 6 114 0 34 79 0 0 chr3 184374671 184374747 -33662411 + GC_rich Low_complexity Low_complexity 1 76 0 192 77 0 0 chr3 184375067 184375093 -33662065 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 250 238 105 42 chr3 184376397 184376616 -33660542 + L1MDb LINE L1 1057 1287 -5109 1044 227 53 13 chr3 184376633 184376937 -33660221 + L1ME LINE L1 5504 5819 -347 224 329 25 0 chr3 184379376 184379455 -33657703 - L2 LINE L2 -7 3265 3185 29 0 0 0 chr3 184379707 184379736 -33657422 + AT_rich Low_complexity Low_complexity 1 29 0 1065 263 154 10 chr3 184380577 184381175 -33655983 - L1M4 LINE L1 -2092 4054 3371 458 262 215 7 chr3 184382657 184382806 -33654352 - MER5A DNA MER1_type -6 183 4 364 139 139 0 chr3 184383210 184383289 -33653869 + MER21B LTR ERV1 1 90 -773 878 201 0 50 chr3 184383290 184383469 -33653689 - AluJb SINE Alu -24 288 119 701 82 8 25 chr3 184383502 184383624 -33653534 + (TTC)n Simple_repeat Simple_repeat 2 121 0 812 152 8 0 chr3 184383631 184383763 -33653395 - FLAM_C SINE Alu -2 141 9 1672 184 205 12 chr3 184383772 184384250 -33652908 + MER21B LTR ERV1 85 714 -217 23 54 0 0 chr3 184384658 184384695 -33652463 + AT_rich Low_complexity Low_complexity 1 37 0 754 188 0 22 chr3 184387262 184387400 -33649758 + AluJb SINE Alu 157 291 -21 2183 101 25 0 chr3 184387437 184387723 -33649435 + AluSx SINE Alu 4 296 -16 336 48 0 0 chr3 184388686 184388728 -33648430 + (A)n Simple_repeat Simple_repeat 1 42 0 21 36 0 0 chr3 184388867 184388895 -33648263 + AT_rich Low_complexity Low_complexity 1 28 0 242 288 76 8 chr3 184389048 184389180 -33647978 + MIR SINE MIR 79 219 -43 279 0 0 0 chr3 184389870 184389901 -33647257 + (CA)n Simple_repeat Simple_repeat 1 31 0 2100 160 123 18 chr3 184390408 184390477 -33646681 + L1MB8 LINE L1 5579 5639 -539 2433 74 0 0 chr3 184390477 184390776 -33646382 + AluY SINE Alu 1 299 -12 180 0 0 0 chr3 184390776 184390796 -33646362 + (TA)n Simple_repeat Simple_repeat 2 21 0 2100 160 123 18 chr3 184390796 184391268 -33645890 + L1MB8 LINE L1 5638 6178 0 29 28 0 0 chr3 184391393 184391429 -33645729 + AT_rich Low_complexity Low_complexity 1 36 0 218 290 114 8 chr3 184392076 184392207 -33644951 - MIR SINE MIR -60 202 58 1247 215 11 0 chr3 184392287 184392557 -33644601 - L1MB1 LINE L1 0 6168 5896 21 36 0 0 chr3 184393734 184393762 -33643396 + AT_rich Low_complexity Low_complexity 1 28 0 1669 176 50 0 chr3 184394339 184394617 -33642541 + AluJo SINE Alu 1 292 -20 283 213 142 0 chr3 184395029 184395170 -33641988 + AluJb SINE Alu 6 166 -136 688 262 63 25 chr3 184395280 184395643 -33641515 + L1MDa LINE L1 2004 2380 -4160 347 292 0 0 chr3 184395650 184395739 -33641419 - L1MC4 LINE L1 -1339 6703 6615 309 183 0 0 chr3 184395742 184395802 -33641356 + (CATATA)n Simple_repeat Simple_repeat 2 61 0 511 302 28 12 chr3 184395869 184396124 -33641034 + L1MDa LINE L1 3809 4067 -2473 3915 39 4 27 chr3 184396463 184397195 -33639963 + L1P1 LINE L1 5111 5819 -336 1028 186 145 9 chr3 184397882 184398103 -33639055 + AluSg SINE Alu 1 251 -59 1967 128 48 15 chr3 184398103 184398438 -33638720 - MER39 LTR ERV1 -21 686 341 259 252 90 18 chr3 184398471 184398582 -33638576 - MER39B LTR ERV1 -488 165 47 45 45 0 0 chr3 184398863 184398929 -33638229 + GC_rich Low_complexity Low_complexity 1 66 0 1488 194 43 31 chr3 184399150 184399500 -33637658 + MLT1A1 LTR MaLR 12 365 0 442 262 104 24 chr3 184399678 184399842 -33637316 + Charlie8 DNA MER1_type 107 283 -2134 895 28 0 9 chr3 184400036 184400142 -33637016 + AluY SINE Alu 195 299 -12 326 226 122 52 chr3 184400799 184400914 -33636244 + MIR SINE MIR 20 142 -120 363 268 45 18 chr3 184402221 184402333 -33634825 + MIR SINE MIR 22 136 -126 799 304 37 25 chr3 184402346 184402589 -33634569 - MIR SINE MIR -6 256 11 6522 89 4 0 chr3 184402654 184403690 -33633468 - L1PA11 LINE L1 -2 6172 5141 2182 194 2 38 chr3 184403715 184404164 -33632994 - Tigger2a DNA MER2_type -1 433 1 30 27 0 0 chr3 184404166 184404203 -33632955 + AT_rich Low_complexity Low_complexity 1 37 0 218 215 31 15 chr3 184405744 184405809 -33631349 + (TAAA)n Simple_repeat Simple_repeat 3 68 0 755 135 85 0 chr3 184407769 184408017 -33629141 - L1MA4 LINE L1 -1501 4645 4280 * 4389 154 11 24 chr3 184408012 184409346 -33627812 + L1MA4 LINE L1 4645 5973 -327 723 206 201 0 chr3 184409350 184409569 -33627589 + MSTC-int LTR MaLR 1384 1646 -5 1426 217 87 41 chr3 184409574 184409951 -33627207 + MSTC LTR MaLR 1 368 -28 742 172 0 16 chr3 184409951 184410073 -33627085 - FLAM_C SINE Alu -12 121 2 1426 217 87 41 chr3 184410073 184410104 -33627054 + MSTC LTR MaLR 368 396 0 1977 154 0 6 chr3 184410252 184410564 -33626594 + AluJb SINE Alu 3 312 0 188 88 59 0 chr3 184410567 184410601 -33626557 + A-rich Low_complexity Low_complexity 4 39 0 568 306 72 34 chr3 184410601 184411103 -33626055 + L1M4c LINE L1 1123 1788 -4775 430 226 7 29 chr3 184411097 184411234 -33625924 + L1M4c LINE L1 2206 2339 -4224 * 2147 140 7 0 chr3 184411640 184411948 -33625210 + AluSx SINE Alu 1 310 -2 219 69 0 0 chr3 184411949 184411978 -33625180 + (GGAA)n Simple_repeat Simple_repeat 1 29 0 2224 106 0 0 chr3 184412197 184412489 -33624669 + AluSc SINE Alu 1 292 -17 950 188 122 0 chr3 184413006 184413235 -33623923 + Tigger7 DNA MER2_type 2230 2486 -1 260 276 20 10 chr3 184413335 184413433 -33623725 - Charlie7 DNA MER1_type -2506 106 8 469 343 17 17 chr3 184413685 184413857 -33623301 + MIR3 SINE MIR 21 192 -16 511 172 11 129 chr3 184414067 184414253 -33622905 - L1MC5 LINE L1 -36 7925 7762 30 0 0 0 chr3 184414623 184414653 -33622505 + AT_rich Low_complexity Low_complexity 1 30 0 2257 108 0 22 chr3 184414753 184415068 -33622090 - AluSg SINE Alu -2 308 1 30 0 0 0 chr3 184416339 184416369 -33620789 + AT_rich Low_complexity Low_complexity 1 30 0 446 91 30 0 chr3 184416839 184416905 -33620253 + MER4D LTR ERV1 219 286 -617 2112 76 7 28 chr3 184421480 184421809 -33615349 - AluY SINE Alu 0 324 2 1447 222 3 7 chr3 184421815 184422112 -33615046 - AluJo SINE Alu -16 296 1 29 28 0 0 chr3 184423102 184423138 -33614020 + AT_rich Low_complexity Low_complexity 1 36 0 24 67 0 0 chr3 184424166 184424211 -33612947 + AT_rich Low_complexity Low_complexity 1 45 0 23 33 0 0 chr3 184424425 184424455 -33612703 + AT_rich Low_complexity Low_complexity 1 30 0 338 268 65 65 chr3 184424832 184424970 -33612188 - L2 LINE L2 -8 3305 3168 590 125 9 18 chr3 184425522 184425634 -33611524 - L1MB3 LINE L1 -1 6182 6072 30 0 0 0 chr3 184427038 184427068 -33610090 + AT_rich Low_complexity Low_complexity 1 30 0 1520 113 8 0 chr3 184427626 184427865 -33609293 - L1PA13 LINE L1 0 6163 5923 2251 98 18 3 chr3 184427865 184428191 -33608967 + L1P4 LINE L1 5385 5715 -446 2260 116 3 0 chr3 184429522 184429825 -33607333 + AluSc SINE Alu 1 304 -5 188 197 0 45 chr3 184430082 184430148 -33607010 + T-rich Low_complexity Low_complexity 1 63 0 1231 97 121 5 chr3 184430243 184430449 -33606709 - MER30 DNA MER1_type 0 230 1 227 295 200 53 chr3 184430646 184430836 -33606322 - MIR SINE MIR -31 231 14 288 322 72 10 chr3 184432964 184433115 -33604043 + MIR SINE MIR 29 191 -61 391 204 186 9 chr3 184433252 184433365 -33603793 + MER39 LTR ERV1 1 133 -574 1361 194 70 34 chr3 184433371 184433726 -33603432 + MER39 LTR ERV1 340 707 0 264 331 40 32 chr3 184434605 184434729 -33602429 - L3 LINE CR1 -6 1571 1447 194 258 81 0 chr3 184434818 184434880 -33602278 - L3 LINE CR1 -295 1282 1216 22 0 0 0 chr3 184435004 184435026 -33602132 + AT_rich Low_complexity Low_complexity 1 22 0 250 203 43 14 chr3 184435051 184435120 -33602038 - L1ME4a LINE L1 -83 6038 5968 390 351 63 37 chr3 184436618 184436917 -33600241 + L2 LINE L2 3006 3312 -1 2399 104 11 8 chr3 184437858 184438212 -33598946 - THE1A LTR MaLR 0 355 1 11302 92 7 23 chr3 184438212 184439818 -33597340 - THE1A-int LTR MaLR 0 1580 1 882 71 9 0 chr3 184439819 184439932 -33597226 - THE1A LTR MaLR -1 354 241 2006 92 97 5 chr3 184439932 184440293 -33596865 - LTR7 LTR ERV1 0 450 1 3435 112 19 13 chr3 184440293 184440831 -33596327 - HERVH LTR ERV1 0 7713 7173 1187 150 0 0 chr3 184440885 184441078 -33596080 - HERVH LTR ERV1 -765 6948 6756 * 4389 153 14 0 chr3 184441059 184441782 -33595376 - HERVH LTR ERV1 -1873 5840 5108 1140 147 0 0 chr3 184441781 184441951 -33595207 - HERVH LTR ERV1 -2901 4812 4643 * 2017 90 119 8 chr3 184441967 184442328 -33594830 - LTR7 LTR ERV1 0 450 1 1508 124 30 22 chr3 184442328 184442572 -33594586 - THE1A LTR MaLR -109 246 1 1677 222 84 25 chr3 184442755 184443196 -33593962 - MLT1C LTR MaLR 0 467 1 511 253 65 7 chr3 184443226 184443380 -33593778 - MER106A DNA MER1_type -5 231 69 21 36 0 0 chr3 184443498 184443526 -33593632 + AT_rich Low_complexity Low_complexity 1 28 0 1965 145 0 32 chr3 184443676 184443987 -33593171 - AluSx SINE Alu -11 301 1 729 257 44 6 chr3 184444358 184444612 -33592546 + L1M3 LINE L1 4150 4415 -1731 10447 150 5 2 chr3 184444614 184446270 -33590888 - Tigger1 DNA MER2_type -5 2413 754 3378 154 7 20 chr3 184446312 184446403 -33590755 - Tigger1 DNA MER2_type -1866 552 461 721 65 56 0 chr3 184446403 184446511 -33590647 + L1PA13 LINE L1 6048 6161 -2 3378 154 7 20 chr3 184446511 184446977 -33590181 - Tigger1 DNA MER2_type -1957 461 2 933 256 55 3 chr3 184446997 184447309 -33589849 + L1M3 LINE L1 4412 4739 -1407 3788 165 36 3 chr3 184447309 184448029 -33589129 + L1MC1 LINE L1 5588 6331 -2 1246 150 341 0 chr3 184448487 184448760 -33588398 + MER47A DNA MER2_type 1 366 0 3359 256 84 47 chr3 184448808 184449581 -33587577 + L1MCb LINE L1 297 1040 -5524 1091 155 126 5 chr3 184449581 184449788 -33587370 - MER46A DNA MER2_type -4 232 1 3359 256 84 47 chr3 184449788 184450287 -33586871 + L1MCb LINE L1 1040 1519 -5045 1969 127 13 25 chr3 184450287 184450603 -33586555 + AluSx SINE Alu 1 312 0 3359 256 84 47 chr3 184450603 184451322 -33585836 + L1MCb LINE L1 1519 2210 -4354 1341 151 54 0 chr3 184451322 184451561 -33585597 + L1PA16 LINE L1 5902 6153 -13 3359 256 84 47 chr3 184451561 184451886 -33585272 + L1MCb LINE L1 2210 2522 -4042 2122 71 20 27 chr3 184451886 184452182 -33584976 - AluY SINE Alu -17 294 1 3359 256 84 47 chr3 184452182 184452736 -33584422 + L1MCb LINE L1 2522 3054 -3510 2140 139 0 0 chr3 184452736 184453037 -33584121 - AluJb SINE Alu -11 301 1 3359 256 84 47 chr3 184453037 184453399 -33583759 + L1MCb LINE L1 3054 3840 -2724 2682 185 23 83 chr3 184453448 184454150 -33583008 + L1MC3 LINE L1 6882 7541 -244 409 252 44 30 chr3 184454167 184454302 -33582856 - MLT1A2 LTR MaLR -56 318 182 834 156 31 36 chr3 184454388 184454524 -33582634 + L1MC2 LINE L1 6153 6289 -55 2217 99 3 10 chr3 184454524 184454836 -33582322 - AluSg SINE Alu 0 310 1 834 156 31 36 chr3 184454836 184454891 -33582267 + L1MC2 LINE L1 6289 6343 -1 2509 140 39 18 chr3 184455001 184455458 -33581700 - MLT1C LTR MaLR 0 467 1 2144 285 96 27 chr3 184456052 184457048 -33580110 - L2 LINE L2 -131 3182 2129 262 277 45 9 chr3 184457142 184457254 -33579904 + L1M3 LINE L1 4730 4845 -1301 225 65 0 0 chr3 184457268 184457299 -33579859 + (TA)n Simple_repeat Simple_repeat 1 31 0 902 270 105 41 chr3 184457416 184457670 -33579488 + L1M3 LINE L1 4950 5186 -994 2117 122 0 0 chr3 184457670 184457991 -33579167 + AluSx SINE Alu 1 321 0 902 270 105 41 chr3 184457991 184458151 -33579007 + L1M3 LINE L1 5186 5334 -846 366 23 0 0 chr3 184458151 184458194 -33578964 + (CA)n Simple_repeat Simple_repeat 2 44 0 902 270 105 41 chr3 184458194 184458591 -33578567 + L1M3 LINE L1 5334 5808 -372 231 130 0 0 chr3 184458604 184458650 -33578508 - LTR66 LTR ERVL -171 439 394 300 226 0 0 chr3 184458650 184458712 -33578446 - L1MC4 LINE L1 -1341 6701 6640 231 282 188 0 chr3 184459107 184459224 -33577934 + MER117 DNA MER1_type 2 140 -57 679 322 0 0 chr3 184459644 184459824 -33577334 + MIR3 SINE MIR 27 206 -2 374 256 68 15 chr3 184459875 184460008 -33577150 + MIR SINE MIR 99 238 -24 217 281 146 21 chr3 184460210 184460306 -33576852 - MIR SINE MIR -1 261 154 242 236 0 42 chr3 184460346 184460418 -33576740 + L2 LINE L2 3203 3271 -1 452 217 104 0 chr3 184463135 184463250 -33573908 - FLAM_A SINE Alu -6 127 1 2569 143 41 5 chr3 184463263 184463676 -33573482 + MSTA LTR MaLR 1 428 0 643 172 15 30 chr3 184463818 184463952 -33573206 + MSTA LTR MaLR 297 428 0 255 189 0 0 chr3 184465385 184465438 -33571720 + (TG)n Simple_repeat Simple_repeat 1 53 0 206 280 60 50 chr3 184465773 184465873 -33571285 - MIR SINE MIR -70 192 92 250 344 149 5 chr3 184465964 184466159 -33570999 - MIR SINE MIR -32 230 8 1199 231 130 63 chr3 184467260 184467324 -33569834 - L1ME1 LINE L1 -4 6162 6104 958 231 148 13 chr3 184467324 184467627 -33569531 + MER2 DNA MER2_type 1 344 0 1199 231 130 63 chr3 184467627 184468036 -33569122 - L1ME1 LINE L1 -62 6104 5634 1998 98 6 22 chr3 184468036 184468351 -33568807 - L1MA1 LINE L1 0 6302 5993 1199 231 130 63 chr3 184468351 184468507 -33568651 - L1ME1 LINE L1 -532 5634 5490 2578 224 79 27 chr3 184468510 184469812 -33567346 - L1MC1 LINE L1 -427 6186 4711 * 5112 214 54 39 chr3 184469808 184471742 -33565416 - L1MC1 LINE L1 -1 6332 4374 1761 174 16 10 chr3 184471742 184472052 -33565106 + AluJb SINE Alu 1 312 0 5112 214 54 39 chr3 184472052 184472450 -33564708 - L1MC1 LINE L1 -1959 4374 3983 2225 152 33 31 chr3 184472485 184473034 -33564124 - MLT2A2 LTR ERVL 0 554 1 1478 256 95 20 chr3 184473034 184473667 -33563491 - L1MC1 LINE L1 -1730 4696 4017 1964 122 3 3 chr3 184473690 184473976 -33563182 - AluSx SINE Alu -26 286 1 3042 253 65 29 chr3 184474044 184475624 -33561534 - L1MC1 LINE L1 -2590 3836 2250 610 304 54 39 chr3 184475618 184476119 -33561039 - L1MC1 LINE L1 -4781 1645 1135 * 188 88 59 0 chr3 184476119 184476153 -33561005 + T-rich Low_complexity Low_complexity 4 39 0 1902 157 0 6 chr3 184476156 184476468 -33560690 - AluJb SINE Alu 0 312 3 1430 217 87 41 chr3 184476615 184476646 -33560512 - MSTC LTR MaLR 0 396 368 730 172 0 16 chr3 184476646 184476768 -33560390 + FLAM_C SINE Alu 2 121 -12 1430 217 87 41 chr3 184476768 184477145 -33560013 - MSTC LTR MaLR -28 368 1 1039 225 80 4 chr3 184477145 184477473 -33559685 - MSTC-int LTR MaLR 0 1651 1279 230 95 24 0 chr3 184477532 184477574 -33559584 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 478 282 79 0 chr3 184477598 184477864 -33559294 - L1MEc LINE L1 -5242 1154 868 275 350 60 34 chr3 184478181 184478298 -33558860 + L2 LINE L2 3153 3272 0 228 321 83 0 chr3 184478412 184478496 -33558662 - MIR SINE MIR -162 100 10 1566 206 3 19 chr3 184478927 184479237 -33557921 + AluJb SINE Alu 1 305 -7 1499 129 26 0 chr3 184479424 184479657 -33557501 + L1MB4 LINE L1 5833 6071 -109 1581 214 19 35 chr3 184479660 184480033 -33557125 + MLT1A2 LTR MaLR 1 367 -7 500 95 14 0 chr3 184480033 184480107 -33557051 + L1MB4 LINE L1 6069 6143 -37 470 183 0 12 chr3 184480184 184480266 -33556892 - L1P LINE L1 -1052 5094 5014 3899 93 2 0 chr3 184480266 184480793 -33556365 + L1PA13 LINE L1 5617 6155 -8 229 285 146 25 chr3 184480803 184481119 -33556039 + L1ME LINE L1 2401 2754 -3392 894 304 103 11 chr3 184481224 184482347 -33554811 + L1ME LINE L1 4284 5514 -650 266 229 0 0 chr3 184482392 184482440 -33554718 + LTR33 LTR ERVL 474 521 0 24 32 0 0 chr3 184482557 184482588 -33554570 + AT_rich Low_complexity Low_complexity 1 31 0 189 121 0 0 chr3 184483406 184483439 -33553719 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 1247 184 13 4 chr3 184485674 184485908 -33551250 + AluJo SINE Alu 1 236 -76 322 226 122 52 chr3 184486084 184486199 -33550959 + MIR SINE MIR 20 142 -120 365 268 45 18 chr3 184487504 184487616 -33549542 + MIR SINE MIR 22 136 -126 807 304 37 25 chr3 184487629 184487872 -33549286 - MIR SINE MIR -6 256 11 6494 90 4 0 chr3 184487937 184488973 -33548185 - L1PA11 LINE L1 -2 6172 5141 2182 194 2 38 chr3 184488998 184489447 -33547711 - Tigger2a DNA MER2_type -1 433 1 23 54 0 0 chr3 184489449 184489486 -33547672 + AT_rich Low_complexity Low_complexity 1 37 0 218 215 31 15 chr3 184491027 184491092 -33546066 + (TAAA)n Simple_repeat Simple_repeat 3 68 0 772 135 85 0 chr3 184493053 184493301 -33543857 - L1MA4 LINE L1 -1501 4645 4280 * 6097 157 20 19 chr3 184493296 184494934 -33542224 + L1MA4 LINE L1 4645 6294 -6 277 323 134 46 chr3 184495104 184495476 -33541682 + MLT1J LTR MaLR 37 441 -70 868 315 70 12 chr3 184495486 184495968 -33541190 - L1MC4a LINE L1 -1983 5825 5316 631 309 101 27 chr3 184496223 184497033 -33540125 - L1MC4a LINE L1 -1144 5002 4133 22 0 0 0 chr3 184497284 184497306 -33539852 + AT_rich Low_complexity Low_complexity 1 22 0 195 184 0 0 chr3 184498310 184498348 -33538810 + (TATATG)n Simple_repeat Simple_repeat 5 42 0 28 0 0 0 chr3 184498883 184498911 -33538247 + AT_rich Low_complexity Low_complexity 1 28 0 513 316 36 20 chr3 184499827 184500023 -33537135 + MIR SINE MIR 1 199 -63 28 0 0 0 chr3 184500192 184500220 -33536938 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 184500335 184500356 -33536802 + AT_rich Low_complexity Low_complexity 1 21 0 211 211 0 0 chr3 184501142 184501180 -33535978 + CT-rich Low_complexity Low_complexity 1 38 0 617 123 9 0 chr3 184501505 184501611 -33535547 + (TAGA)n Simple_repeat Simple_repeat 2 108 0 349 296 46 34 chr3 184502011 184502341 -33534817 + L1MEc LINE L1 857 1151 -5054 2497 166 23 27 chr3 184502418 184502905 -33534253 + MER31A LTR ERV1 1 485 0 948 289 121 33 chr3 184503061 184503987 -33533171 + L1PA15-16 LINE L1 1535 2516 -3880 1363 277 78 18 chr3 184504018 184504105 -33533053 + L1MEc LINE L1 2554 2634 -3581 1546 209 3 3 chr3 184504105 184504412 -33532746 + AluSx SINE Alu 1 307 -5 1363 277 78 18 chr3 184504412 184505165 -33531993 + L1MEc LINE L1 2634 3445 -2770 1745 189 3 0 chr3 184505256 184505558 -33531600 + AluJo SINE Alu 3 305 -7 229 330 102 17 chr3 184507532 184507650 -33529508 - L2 LINE L2 -20 3252 3125 2067 127 10 0 chr3 184508677 184508969 -33528189 + AluSq SINE Alu 1 295 -18 386 167 0 33 chr3 184508969 184509059 -33528099 + GA-rich Low_complexity Low_complexity 2 88 0 426 274 59 20 chr3 184509105 184509258 -33527900 + MIR SINE MIR 74 232 -30 243 341 0 11 chr3 184510195 184510286 -33526872 - MER117 DNA MER1_type -107 90 1 6608 42 0 0 chr3 184514659 184515476 -33521682 - L1P LINE L1 -2125 4021 3205 4090 17 4 2 chr3 184515476 184515951 -33521207 + L1PA4 LINE L1 5677 6155 0 3054 100 40 2 chr3 184516288 184516736 -33520422 + MER4C LTR ERV1 1 465 0 219 69 0 0 chr3 184516749 184516778 -33520380 + (TG)n Simple_repeat Simple_repeat 2 30 0 369 332 73 16 chr3 184517493 184517740 -33519418 + MLT1L LTR MaLR 353 613 -2 506 296 126 5 chr3 184518456 184518655 -33518503 + MIR SINE MIR 37 259 -3 248 285 18 105 chr3 184518664 184518892 -33518266 - L2 LINE L2 0 3313 3106 760 311 114 11 chr3 184519265 184519615 -33517543 + MLT1K LTR MaLR 161 546 -42 2142 122 0 0 chr3 184519615 184519918 -33517240 + AluSc SINE Alu 1 303 -6 1335 98 33 23 chr3 184519968 184520183 -33516975 - L1M1 LINE L1 -4849 2716 2500 2202 105 0 6 chr3 184520186 184520530 -33516628 + L1M1 LINE L1 2323 2664 -4901 1473 236 75 3 chr3 184520533 184520919 -33516239 + L1ME1 LINE L1 5401 5814 -352 1228 107 0 0 chr3 184520922 184521100 -33516058 - L1P4 LINE L1 -390 5784 5607 748 123 0 0 chr3 184521108 184521222 -33515936 - L1PA15 LINE L1 -134 6031 5918 * 2466 150 46 10 chr3 184521218 184521721 -33515437 - L1PA15 LINE L1 -454 5711 5190 893 244 34 13 chr3 184521721 184521959 -33515199 + L1ME1 LINE L1 5919 6161 -5 207 0 0 0 chr3 184522219 184522242 -33514916 + (T)n Simple_repeat Simple_repeat 1 23 0 229 320 107 10 chr3 184522262 184522459 -33514699 + L2 LINE L2 2440 2655 -659 22 0 0 0 chr3 184523768 184523790 -33513368 + AT_rich Low_complexity Low_complexity 1 22 0 317 222 69 85 chr3 184523884 184524073 -33513085 - L1ME4a LINE L1 -12 6109 5924 30 45 0 0 chr3 184524180 184524224 -33512934 + AT_rich Low_complexity Low_complexity 1 44 0 656 244 0 0 chr3 184524236 184524359 -33512799 - FLAM_C SINE Alu -10 123 1 637 333 26 11 chr3 184524400 184524722 -33512436 - L1ME4a LINE L1 -434 5687 5361 27 87 0 0 chr3 184524764 184524833 -33512325 + AT_rich Low_complexity Low_complexity 1 69 0 918 29 0 0 chr3 184525598 184525703 -33511455 - AluY SINE Alu -12 299 195 439 262 104 24 chr3 184525897 184526061 -33511097 - MER102b DNA MER1_type -47 294 118 1491 194 43 31 chr3 184526239 184526589 -33510569 - MLT1A1 LTR MaLR 0 365 12 1157 242 92 89 chr3 184526669 184527210 -33509948 + MER77 LTR ERV1 53 595 -10 1768 228 23 8 chr3 184527544 184527934 -33509224 + MSTD LTR MaLR 1 396 0 270 0 0 0 chr3 184528062 184528092 -33509066 + (TA)n Simple_repeat Simple_repeat 1 30 0 431 292 159 35 chr3 184528330 184528587 -33508571 + L3 LINE CR1 1128 1416 -161 201 121 0 0 chr3 184530685 184530718 -33506440 + (CA)n Simple_repeat Simple_repeat 1 33 0 231 268 80 27 chr3 184531990 184532102 -33505056 + MIR SINE MIR 30 147 -115 217 296 77 30 chr3 184532217 184532333 -33504825 - MIR SINE MIR -78 130 30 404 233 165 34 chr3 184534102 184534308 -33502850 + L1ME4a LINE L1 5611 5843 -278 254 294 17 17 chr3 184534499 184534618 -33502540 + (TA)n Simple_repeat Simple_repeat 2 120 0 264 203 30 50 chr3 184534624 184534764 -33502394 - MLT1H LTR MaLR 0 549 460 * 295 261 35 99 chr3 184534731 184534873 -33502285 - MLT1H LTR MaLR -229 320 188 275 191 135 0 chr3 184534932 184535021 -33502137 + L1ME4a LINE L1 6010 6110 -11 3059 27 3 0 chr3 184536644 184537009 -33500149 + L1PA2 LINE L1 5788 6153 -2 2021 129 7 0 chr3 184537284 184537570 -33499588 - AluSq SINE Alu -25 288 1 266 277 59 20 chr3 184538345 184538446 -33498712 - L2 LINE L2 -15 3298 3194 * 460 384 57 25 chr3 184538444 184538811 -33498347 + L2 LINE L2 946 1324 -1990 1235 213 54 35 chr3 184538876 184539229 -33497929 + Tigger7 DNA MER2_type 1 2490 -1 2639 107 5 3 chr3 184539260 184539634 -33497524 - THE1C LTR MaLR 0 375 1 451 313 48 0 chr3 184539939 184540105 -33497053 + MIR SINE MIR 87 260 -2 470 334 122 26 chr3 184540110 184540571 -33496587 + L2 LINE L2 1718 2222 -1092 216 0 0 0 chr3 184540599 184540623 -33496535 + (A)n Simple_repeat Simple_repeat 1 24 0 421 290 58 54 chr3 184540634 184541034 -33496124 - MLT1J LTR MaLR -44 467 1 436 320 22 11 chr3 184541034 184541212 -33495946 + L2 LINE L2 2213 2392 -922 1220 121 0 0 chr3 184541252 184541418 -33495740 - AluSx SINE Alu -13 299 134 496 165 51 0 chr3 184541421 184541579 -33495579 + (TA)n Simple_repeat Simple_repeat 1 166 0 696 145 24 0 chr3 184541584 184541708 -33495450 - AluSx SINE Alu -183 129 3 416 342 89 58 chr3 184542181 184542773 -33494385 + L2 LINE L2 2666 3264 -8 2092 124 3 0 chr3 184544531 184544821 -33492337 + AluSp SINE Alu 1 291 -22 210 125 0 0 chr3 184545441 184545473 -33491685 - L2 LINE L2 -11 3302 3271 21 0 0 0 chr3 184545611 184545632 -33491526 + AT_rich Low_complexity Low_complexity 1 21 0 2228 96 0 10 chr3 184545635 184545927 -33491231 - AluSg SINE Alu -21 289 1 2171 109 0 13 chr3 184546155 184546457 -33490701 - AluSq SINE Alu -15 298 1 290 346 30 15 chr3 184546688 184546821 -33490337 + L2 LINE L2 1785 1919 -1395 941 245 15 30 chr3 184546853 184547118 -33490040 + MIR SINE MIR 2 262 0 5725 116 13 26 chr3 184547179 184548057 -33489101 + L1PA15 LINE L1 4917 5765 -400 2485 67 0 6 chr3 184548057 184548370 -33488788 + AluY SINE Alu 1 311 0 5725 116 13 26 chr3 184548370 184548766 -33488392 + L1PA15 LINE L1 5765 6165 0 496 341 139 32 chr3 184548781 184549716 -33487442 + L2 LINE L2 2233 3267 -5 2234 121 0 0 chr3 184550170 184550477 -33486681 - AluSx SINE Alu -1 311 5 234 186 43 14 chr3 184551536 184551606 -33485552 + L1P LINE L1 5318 5389 -742 326 229 139 51 chr3 184551703 184552035 -33485123 + L1ME4a LINE L1 5721 6081 -40 21 0 0 0 chr3 184552590 184552611 -33484547 + AT_rich Low_complexity Low_complexity 1 21 0 750 316 79 38 chr3 184554558 184555176 -33481982 - L2 LINE L2 -101 3212 2570 331 278 97 14 chr3 184556946 184557090 -33480068 - MER117 DNA MER1_type -33 164 9 41 36 0 0 chr3 184558095 184558150 -33479008 + AT_rich Low_complexity Low_complexity 1 55 0 21 0 0 0 chr3 184558536 184558557 -33478601 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 184560586 184560608 -33476550 + AT_rich Low_complexity Low_complexity 1 22 0 741 304 123 15 chr3 184563105 184563431 -33473727 + L3 LINE CR1 1018 1378 -199 625 378 86 20 chr3 184564031 184564844 -33472314 + L2 LINE L2 2389 3272 0 24 32 0 0 chr3 184565033 184565064 -33472094 + AT_rich Low_complexity Low_complexity 1 31 0 2101 147 0 0 chr3 184565160 184565505 -33471653 + AluSx SINE Alu 1 345 0 579 66 0 0 chr3 184565505 184565581 -33471577 + (GGAAA)n Simple_repeat Simple_repeat 4 79 0 436 252 19 10 chr3 184565593 184565696 -33471462 - L2 LINE L2 -18 3295 3192 500 294 127 59 chr3 184566582 184567055 -33470103 - L2 LINE L2 0 3313 2809 38 22 0 0 chr3 184567067 184567112 -33470046 + AT_rich Low_complexity Low_complexity 1 45 0 736 330 15 26 chr3 184567119 184567383 -33469775 + LTR16A LTR ERVL 178 438 -12 1493 260 98 37 chr3 184567571 184568079 -33469079 + MLT1F LTR MaLR 1 539 -3 1730 316 77 20 chr3 184568085 184568611 -33468547 + HERV16 LTR ERVL 184 679 -4317 2833 180 24 15 chr3 184568611 184569155 -33468003 - MER44D DNA MER2_type 0 605 2 1730 316 77 20 chr3 184569155 184569747 -33467411 + HERV16 LTR ERVL 679 1425 -3571 921 333 61 21 chr3 184569888 184570266 -33466892 + HERV16 LTR ERVL 2396 2788 -2208 1155 151 45 16 chr3 184570335 184570580 -33466578 + L1MA9 LINE L1 6058 6309 -3 1124 332 77 39 chr3 184570602 184571729 -33465429 + HERVL LTR ERVL 4045 5260 -504 1850 162 7 10 chr3 184571947 184572256 -33464902 - AluJo SINE Alu -3 309 2 844 302 108 7 chr3 184572331 184572609 -33464549 + LTR16A LTR ERVL 142 447 -3 440 299 43 32 chr3 184572649 184572836 -33464322 - MIR SINE MIR -49 213 25 925 310 63 52 chr3 184574720 184575178 -33461980 + MER115 DNA AcHobo 230 692 -1 274 322 126 40 chr3 184575454 184575770 -33461388 + L2 LINE L2 2686 3022 -250 216 355 57 7 chr3 184576078 184576219 -33460939 - L2 LINE L2 -567 2747 2600 545 192 105 83 chr3 184576585 184576898 -33460260 + HAL1 LINE L1 2040 2359 -148 29 28 0 0 chr3 184576955 184576991 -33460167 + AT_rich Low_complexity Low_complexity 1 36 0 2370 248 85 26 chr3 184577103 184577917 -33459241 - L1ME3A LINE L1 -43 6127 5266 216 331 40 57 chr3 184578208 184578332 -33458826 + MER91C DNA MER1_type 17 138 -2 320 249 149 90 chr3 184578768 184579069 -33458089 + L1MC4a LINE L1 5260 5578 -2230 394 236 106 89 chr3 184579110 184579356 -33457802 + L1MC4a LINE L1 5688 5937 -1871 819 122 15 15 chr3 184579553 184579684 -33457474 + AluSg/x SINE Alu 172 302 -8 402 302 63 13 chr3 184579788 184579947 -33457211 - MIR SINE MIR -88 174 8 725 318 8 30 chr3 184580476 184580743 -33456415 + MIR SINE MIR 2 262 0 355 326 104 26 chr3 184580850 184581043 -33456115 + L2 LINE L2 2883 3090 -223 523 268 27 22 chr3 184581289 184581472 -33455686 - MER113 DNA MER1_type? -85 436 253 265 286 19 29 chr3 184581472 184581577 -33455581 - MLT1I LTR MaLR 0 409 306 2422 83 3 0 chr3 184581777 184582079 -33455079 + AluSp SINE Alu 1 303 -10 1301 197 19 16 chr3 184582203 184582540 -33454618 + MER47B DNA MER2_type 20 418 0 316 208 73 0 chr3 184582540 184582629 -33454529 - MER113 DNA MER1_type? -266 255 160 256 304 38 13 chr3 184582772 184582851 -33454307 - MIR SINE MIR -108 100 20 2017 126 27 0 chr3 184582964 184583148 -33454010 - AluSp SINE Alu -1 312 116 227 30 0 30 chr3 184583148 184583181 -33453977 + (TTTTA)n Simple_repeat Simple_repeat 1 32 0 2017 126 27 0 chr3 184583181 184583290 -33453868 - AluSp SINE Alu -197 116 11 23 0 0 0 chr3 184583412 184583435 -33453723 + AT_rich Low_complexity Low_complexity 1 23 0 198 103 0 0 chr3 184583802 184583831 -33453327 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 285 331 63 66 chr3 184585592 184585939 -33451219 - L2 LINE L2 0 3313 2968 204 355 45 18 chr3 184586069 184586179 -33450979 - L2 LINE L2 -465 2849 2737 245 300 78 0 chr3 184586295 184586385 -33450773 + LTR33A LTR ERVL 61 157 -366 272 288 9 36 chr3 184586534 184586645 -33450513 + LTR33A LTR ERVL 395 502 -21 3486 147 87 26 chr3 184587502 184587746 -33449412 - L1MB2 LINE L1 -11 6160 5932 2127 140 0 0 chr3 184587746 184588054 -33449104 - AluSx SINE Alu -2 310 3 3486 147 87 26 chr3 184588054 184588490 -33448668 - L1MB2 LINE L1 -239 5932 5439 21 0 0 0 chr3 184588835 184588856 -33448302 + AT_rich Low_complexity Low_complexity 1 21 0 2182 34 49 4 chr3 184589177 184589444 -33447714 - AluY SINE Alu -32 279 1 329 331 102 6 chr3 184589500 184589666 -33447492 + MIR SINE MIR 23 204 -58 1147 169 22 0 chr3 184589845 184590076 -33447082 + L1MA8 LINE L1 6053 6288 -3 2021 124 0 13 chr3 184590079 184590419 -33446739 + AluSx SINE Alu 1 336 0 345 284 80 57 chr3 184590690 184590866 -33446292 - MIR SINE MIR -82 180 1 1662 160 29 14 chr3 184591060 184591341 -33445817 - AluJb SINE Alu -27 285 1 316 321 83 42 chr3 184594458 184594626 -33442532 - MIR3 SINE MIR -19 189 15 333 357 36 9 chr3 184595238 184595350 -33441808 - L2 LINE L2 -4 3268 3154 539 263 43 46 chr3 184595467 184595687 -33441471 + MIR SINE MIR 19 227 -35 195 255 64 0 chr3 184595959 184596006 -33441152 + L2 LINE L2 3221 3270 -2 1738 196 0 10 chr3 184596333 184596645 -33440513 + AluJb SINE Alu 1 309 -3 297 240 40 0 chr3 184597455 184597547 -33439611 + MIR SINE MIR 34 130 -78 24 0 0 0 chr3 184600191 184600215 -33436943 + AT_rich Low_complexity Low_complexity 1 24 0 208 139 0 0 chr3 184600635 184600671 -33436487 + (CA)n Simple_repeat Simple_repeat 1 36 0 232 181 43 11 chr3 184601401 184601495 -33435663 + (TA)n Simple_repeat Simple_repeat 1 97 0 579 274 112 31 chr3 184601646 184601869 -33435289 + MIR SINE MIR 15 255 -7 24 0 0 0 chr3 184602518 184602542 -33434616 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr3 184605056 184605084 -33432074 + AT_rich Low_complexity Low_complexity 1 28 0 2291 97 3 0 chr3 184605292 184605591 -33431567 - AluSx SINE Alu -12 300 1 281 320 66 41 chr3 184606538 184606660 -33430498 + MIR SINE MIR 21 145 -117 534 174 0 114 chr3 184606705 184606854 -33430304 + FLAM_A SINE Alu 2 133 0 3108 197 36 6 chr3 184607059 184607703 -33429455 - L1MC4a LINE L1 0 7808 7146 645 225 0 0 chr3 184607720 184607849 -33429309 - FLAM_C SINE Alu -4 129 1 595 180 181 0 chr3 184607849 184608027 -33429131 - L1MC3 LINE L1 -4 7991 7619 484 229 49 0 chr3 184608017 184608139 -33429019 - L1MD3 LINE L1 -786 7209 7082 * 207 185 19 56 chr3 184608777 184608831 -33428327 - L2 LINE L2 0 3313 3262 2094 136 7 0 chr3 184609111 184609420 -33427738 - AluSx SINE Alu -1 311 1 21 0 0 0 chr3 184609604 184609625 -33427533 + AT_rich Low_complexity Low_complexity 1 21 0 209 291 18 0 chr3 184609625 184609680 -33427478 - MIR SINE MIR -3 259 204 52 50 0 0 chr3 184609796 184609876 -33427282 + AT_rich Low_complexity Low_complexity 1 80 0 22 56 0 0 chr3 184610894 184610930 -33426228 + AT_rich Low_complexity Low_complexity 1 36 0 846 135 0 32 chr3 184612162 184612288 -33424870 - FLAM_C SINE Alu -19 124 3 21 0 0 0 chr3 184614637 184614658 -33422500 + AT_rich Low_complexity Low_complexity 1 21 0 1015 111 0 0 chr3 184615327 184615471 -33421687 - L1MA2 LINE L1 -5 6299 6156 2177 97 7 10 chr3 184618439 184618737 -33418421 - AluSq SINE Alu -16 297 1 192 340 30 10 chr3 184618998 184619098 -33418060 - MIR SINE MIR -70 192 91 26 0 0 0 chr3 184619312 184619338 -33417820 + AT_rich Low_complexity Low_complexity 1 26 0 226 303 152 10 chr3 184620131 184620230 -33416928 - MIR3 SINE MIR -10 198 86 21 0 0 0 chr3 184620863 184620884 -33416274 + AT_rich Low_complexity Low_complexity 1 21 0 236 156 52 13 chr3 184622400 184622477 -33414681 + (TA)n Simple_repeat Simple_repeat 2 81 0 21 0 0 0 chr3 184627112 184627133 -33410025 + AT_rich Low_complexity Low_complexity 1 21 0 465 171 45 0 chr3 184630815 184630903 -33406255 - LTR48B LTR ERV1 -75 569 478 261 151 0 0 chr3 184632274 184632327 -33404831 + (TGGA)n Simple_repeat Simple_repeat 2 54 0 207 0 0 0 chr3 184632325 184632348 -33404810 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 21 36 0 0 chr3 184632351 184632379 -33404779 + AT_rich Low_complexity Low_complexity 1 28 0 2112 215 125 90 chr3 184632669 184633808 -33403350 + L1MC5 LINE L1 6728 7906 -55 223 342 48 37 chr3 184637364 184637551 -33399607 - MIR SINE MIR -25 237 49 523 329 53 17 chr3 184638754 184638982 -33398176 + MIR SINE MIR 20 251 -11 23 0 0 0 chr3 184639220 184639243 -33397915 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 184639471 184639492 -33397666 + GC_rich Low_complexity Low_complexity 1 21 0 1860 156 10 7 chr3 184641765 184642073 -33395085 - AluJb SINE Alu -3 309 1 264 59 0 0 chr3 184642126 184642160 -33394998 + (CA)n Simple_repeat Simple_repeat 2 35 0 21 36 0 0 chr3 184642318 184642346 -33394812 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr3 184642791 184642814 -33394344 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr3 184645074 184645100 -33392058 + AT_rich Low_complexity Low_complexity 1 26 0 33 25 0 0 chr3 184645433 184645473 -33391685 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr3 184653527 184653549 -33383609 + AT_rich Low_complexity Low_complexity 1 22 0 423 0 0 0 chr3 184654168 184654215 -33382943 + (CA)n Simple_repeat Simple_repeat 2 48 0 240 111 0 0 chr3 184654549 184654585 -33382573 + (A)n Simple_repeat Simple_repeat 1 36 0 30 0 0 0 chr3 184655886 184655916 -33381242 + AT_rich Low_complexity Low_complexity 1 30 0 326 107 18 0 chr3 184656735 184656791 -33380367 + (TG)n Simple_repeat Simple_repeat 1 57 0 22 0 0 0 chr3 184657040 184657062 -33380096 + AT_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chr3 184658098 184658122 -33379036 + (T)n Simple_repeat Simple_repeat 1 24 0 194 174 22 0 chr3 184658803 184658849 -33378309 + (CAT)n Simple_repeat Simple_repeat 1 47 0 405 90 0 0 chr3 184658943 184658960 -33378198 + (TG)n Simple_repeat Simple_repeat 1 84 0 405 90 0 0 chr3 184658960 184659027 -33378131 + (TG)n Simple_repeat Simple_repeat 2 68 0 22 56 0 0 chr3 184661029 184661065 -33376093 + AT_rich Low_complexity Low_complexity 1 36 0 35 0 0 0 chr3 184661252 184661287 -33375871 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr3 184661315 184661350 -33375808 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr3 184662149 184662193 -33374965 + AT_rich Low_complexity Low_complexity 1 44 0 25 0 0 0 chr3 184662560 184662585 -33374573 + AT_rich Low_complexity Low_complexity 1 25 0 219 208 73 0 chr3 184662708 184662786 -33374372 + MIR SINE MIR 43 129 -79 438 274 47 0 chr3 184663342 184663448 -33373710 + L2 LINE L2 3153 3263 -9 185 352 0 0 chr3 184663698 184663789 -33373369 + MIR SINE MIR 172 262 0 292 311 49 49 chr3 184668227 184668302 -33368856 + MIR SINE MIR 70 144 -118 1974 124 17 13 chr3 184668302 184668601 -33368557 + AluSg SINE Alu 1 300 -10 292 311 49 49 chr3 184668601 184668689 -33368469 + MIR SINE MIR 143 233 -29 892 281 32 0 chr3 184668754 184669003 -33368155 + MIR SINE MIR 3 259 -3 392 49 3 0 chr3 184669444 184669498 -33367660 + L1MA3 LINE L1 6046 6104 -200 279 215 41 25 chr3 184669529 184669650 -33367508 + (TTATA)n Simple_repeat Simple_repeat 1 123 0 1312 112 0 5 chr3 184669660 184669857 -33367301 + L1MA3 LINE L1 6110 6305 0 606 280 12 24 chr3 184670629 184670797 -33366361 + MLT1F LTR MaLR 1 166 -401 186 43 0 0 chr3 184670805 184670828 -33366330 + (TC)n Simple_repeat Simple_repeat 2 24 0 977 234 121 28 chr3 184670834 184671124 -33366034 + MLT1F LTR MaLR 217 533 -9 186 43 0 0 chr3 184672049 184672072 -33365086 + (TAA)n Simple_repeat Simple_repeat 2 24 0 187 337 0 40 chr3 184672370 184672471 -33364687 - L2 LINE L2 -625 2689 2593 509 268 119 45 chr3 184672494 184672737 -33364421 - MIR SINE MIR -1 261 1 21 0 0 0 chr3 184673100 184673121 -33364037 + AT_rich Low_complexity Low_complexity 1 21 0 2279 148 22 25 chr3 184673123 184673488 -33363670 + THE1B LTR MaLR 1 364 0 24 0 0 0 chr3 184675462 184675486 -33361672 + AT_rich Low_complexity Low_complexity 1 24 0 957 210 0 17 chr3 184676040 184676216 -33360942 - AluJb SINE Alu -54 258 86 297 118 0 0 chr3 184676771 184676822 -33360336 + (CA)n Simple_repeat Simple_repeat 2 52 0 674 185 118 0 chr3 184677238 184677357 -33359801 - FLAM_C SINE Alu 0 133 1 2416 64 20 0 chr3 184679155 184679451 -33357707 + AluSc SINE Alu 3 304 -5 190 237 0 0 chr3 184680443 184680481 -33356677 + L2 LINE L2 3262 3299 -14 25 51 0 0 chr3 184680610 184680649 -33356509 + AT_rich Low_complexity Low_complexity 1 39 0 246 244 39 0 chr3 184681671 184681749 -33355409 - L1P LINE L1 -756 5398 5318 2248 121 0 0 chr3 184682808 184683115 -33354043 + AluSx SINE Alu 5 311 -1 447 338 140 33 chr3 184683569 184684504 -33352654 - L2 LINE L2 -5 3267 2233 2526 123 7 32 chr3 184684515 184684920 -33352238 - L1PA15 LINE L1 -2 6163 5769 2168 110 13 10 chr3 184684922 184685232 -33351926 - AluY SINE Alu 0 311 1 1428 168 86 11 chr3 184688455 184688735 -33348423 - AluJo SINE Alu -7 305 5 966 237 142 12 chr3 184688751 184689088 -33348070 - L1MB8 LINE L1 -1 6177 5797 456 155 36 0 chr3 184689099 184689183 -33347975 - AluS SINE Alu -2 308 222 216 67 0 0 chr3 184689520 184689550 -33347608 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 189 302 35 12 chr3 184689550 184689636 -33347522 - L2 LINE L2 -17 3255 3168 327 319 99 6 chr3 184690071 184690253 -33346905 + MIR SINE MIR 30 228 -34 213 307 0 0 chr3 184690498 184690573 -33346585 + MIR SINE MIR 48 122 -86 1029 123 0 7 chr3 184690788 184690934 -33346224 + AluSq/x SINE Alu 1 145 -168 2521 57 3 0 chr3 184690934 184691234 -33345924 + AluY SINE Alu 1 301 -10 26 0 0 0 chr3 184691246 184691272 -33345886 + AT_rich Low_complexity Low_complexity 1 26 0 288 291 90 64 chr3 184692855 184693089 -33344069 + L1ME3A LINE L1 5659 5898 -223 453 197 34 51 chr3 184693149 184693266 -33343892 - MIR SINE MIR -102 160 46 2421 90 0 0 chr3 184693336 184693635 -33343523 + AluSp SINE Alu 1 299 -14 1542 133 56 44 chr3 184694929 184695199 -33341959 + THE1B LTR MaLR 92 364 0 214 325 61 9 chr3 184695256 184695370 -33341788 - L2 LINE L2 -9 3304 3185 990 121 0 0 chr3 184695442 184695574 -33341584 + AluSg SINE Alu 1 132 -178 1723 49 10 0 chr3 184695575 184695779 -33341379 + AluSp SINE Alu 2 207 -106 2023 152 10 0 chr3 184696078 184696387 -33340771 + AluJb SINE Alu 1 312 0 202 161 0 129 chr3 184696455 184696517 -33340641 - L2 LINE L2 -1 3312 3259 303 275 141 89 chr3 184696766 184697250 -33339908 - L1M2 LINE L1 -5832 1017 509 180 0 0 0 chr3 184697748 184697768 -33339390 + (TCCC)n Simple_repeat Simple_repeat 2 21 0 291 232 143 18 chr3 184699566 184699678 -33337480 + L1ME3A LINE L1 6045 6170 0 2264 113 0 0 chr3 184699683 184699976 -33337182 + AluSg SINE Alu 1 293 -17 1040 171 51 9 chr3 184700261 184700477 -33336681 - L1ME3A LINE L1 -280 5890 5666 703 177 9 0 chr3 184701516 184701629 -33335529 + FLAM_C SINE Alu 4 117 -26 729 111 0 0 chr3 184701735 184701834 -33335324 - AluJ/FLAM SINE Alu -212 100 2 2099 91 42 0 chr3 184701835 184702121 -33335037 - AluSx SINE Alu -13 299 2 1967 141 7 3 chr3 184702249 184702539 -33334619 - AluSx SINE Alu -21 291 1 313 331 48 21 chr3 184704716 184704861 -33332297 - MIR SINE MIR -83 179 31 1921 164 0 0 chr3 184705094 184705387 -33331771 + AluJb SINE Alu 1 293 -19 300 268 31 10 chr3 184707698 184707795 -33329363 - MIR SINE MIR -80 182 84 641 112 0 0 chr3 184709163 184709252 -33327906 - AluSg/x SINE Alu -10 302 214 2371 77 0 10 chr3 184709808 184710107 -33327051 - AluSq SINE Alu -17 296 1 607 110 0 33 chr3 184710109 184710192 -33326966 - AluSc SINE Alu -95 214 133 1532 124 12 99 chr3 184710192 184710514 -33326644 - AluSx SINE Alu -18 294 1 225 272 165 0 chr3 184710842 184710945 -33326213 + MIR SINE MIR 30 149 -59 576 239 66 33 chr3 184711968 184712181 -33324977 - MIR SINE MIR -37 225 6 2433 73 0 10 chr3 184712198 184712511 -33324647 - AluSg SINE Alu 0 310 1 200 366 48 70 chr3 184714565 184714792 -33322366 + L2 LINE L2 2998 3219 -53 624 91 0 0 chr3 184714892 184714980 -33322178 + (GGAA)n Simple_repeat Simple_repeat 3 90 0 198 263 38 50 chr3 184714980 184715060 -33322098 + MIR SINE MIR 20 98 -110 348 24 0 0 chr3 184716950 184716991 -33320167 + (TG)n Simple_repeat Simple_repeat 2 42 0 272 318 15 45 chr3 184717330 184717462 -33319696 + MIR SINE MIR 64 191 -71 21 0 0 0 chr3 184717523 184717544 -33319614 + AT_rich Low_complexity Low_complexity 1 21 0 313 323 24 0 chr3 184717691 184717815 -33319343 + L2 LINE L2 1963 2089 -1225 385 157 0 56 chr3 184717960 184718049 -33319109 + L1PA3 LINE L1 6070 6153 -2 2052 127 0 13 chr3 184718071 184718386 -33318772 + AluSx SINE Alu 1 311 -1 289 400 19 7 chr3 184718439 184718594 -33318564 + L2 LINE L2 3116 3272 0 335 289 121 26 chr3 184718619 184718809 -33318349 - L2 LINE L2 -397 2917 2710 180 0 0 0 chr3 184721232 184721252 -33315906 + (TA)n Simple_repeat Simple_repeat 2 21 0 22 35 0 0 chr3 184721292 184721321 -33315837 + AT_rich Low_complexity Low_complexity 1 29 0 638 250 103 30 chr3 184721417 184721649 -33315509 - MIR SINE MIR -1 261 13 842 219 49 29 chr3 184721683 184721888 -33315270 - MER3 DNA MER1_type 0 209 1 490 259 88 34 chr3 184722217 184722422 -33314736 + MIR SINE MIR 9 224 -38 310 290 38 30 chr3 184722754 184722885 -33314273 - MER5A DNA MER1_type -51 138 7 397 332 24 24 chr3 184723384 184723592 -33313566 + MIR SINE MIR 29 236 -26 609 110 0 0 chr3 184724191 184724282 -33312876 + (CA)n Simple_repeat Simple_repeat 2 92 0 2469 76 0 10 chr3 184724288 184724602 -33312556 - AluY SINE Alu 0 311 1 206 344 0 0 chr3 184726425 184726486 -33310672 + L2 LINE L2 2998 3058 -214 236 156 52 13 chr3 184727807 184727884 -33309274 + (TA)n Simple_repeat Simple_repeat 2 81 0 21 0 0 0 chr3 184732519 184732540 -33304618 + AT_rich Low_complexity Low_complexity 1 21 0 469 171 45 0 chr3 184736221 184736309 -33300849 - LTR48B LTR ERV1 -75 569 478 261 151 0 0 chr3 184737681 184737734 -33299424 + (TGGA)n Simple_repeat Simple_repeat 2 54 0 207 0 0 0 chr3 184737732 184737755 -33299403 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 21 36 0 0 chr3 184737758 184737786 -33299372 + AT_rich Low_complexity Low_complexity 1 28 0 2132 213 126 91 chr3 184738076 184739215 -33297943 + L1MC5 LINE L1 6728 7906 -55 236 316 151 53 chr3 184741573 184741877 -33295281 + L2 LINE L2 2478 2811 -503 230 284 55 55 chr3 184743038 184743165 -33293993 + MIR SINE MIR 29 155 -107 246 322 11 0 chr3 184743168 184743255 -33293903 - MIR SINE MIR -22 240 153 1894 112 42 18 chr3 184743255 184743613 -33293545 + Tigger4(Zombi) DNA MER2_type 1 2731 0 999 98 116 102 chr3 184744019 184744244 -33292914 + MER30 DNA MER1_type 1 228 -2 3629 74 6 0 chr3 184744352 184745184 -33291974 + L1PA8A LINE L1 4869 5703 -428 39 84 0 0 chr3 184745379 184745474 -33291684 + AT_rich Low_complexity Low_complexity 1 95 0 1208 199 93 28 chr3 184745503 184745794 -33291364 + AluJb SINE Alu 1 310 -2 600 250 68 54 chr3 184745806 184745928 -33291230 + L2 LINE L2 3014 3133 -180 2185 126 0 0 chr3 184745928 184746230 -33290928 - AluSx SINE Alu -7 305 4 600 250 68 54 chr3 184746230 184746403 -33290755 + L2 LINE L2 3133 3313 0 495 347 58 0 chr3 184746460 184746702 -33290456 + MIR SINE MIR 5 260 -2 886 156 96 6 chr3 184747452 184747619 -33289539 - MER3 DNA MER1_type -27 182 1 269 274 0 0 chr3 184748459 184748521 -33288637 + MIR3 SINE MIR 108 169 -39 2929 47 0 19 chr3 184748592 184748957 -33288201 - L1PA5 LINE L1 -2 6152 5795 2010 110 0 0 chr3 184751097 184751369 -33285789 - AluSg SINE Alu -38 272 1 216 296 174 10 chr3 184751995 184752093 -33285065 - MIR SINE MIR -97 165 52 192 242 97 32 chr3 184752464 184752526 -33284632 + MIR SINE MIR 79 144 -64 418 339 106 5 chr3 184754940 184755158 -33282000 - MIR SINE MIR -18 244 5 310 169 78 0 chr3 184755184 184755326 -33281832 + (TA)n Simple_repeat Simple_repeat 2 154 0 6330 98 31 3 chr3 184755619 184757350 -33279808 + L1PA8 LINE L1 4426 6172 0 1634 234 77 47 chr3 184757654 184758226 -33278932 - L1ME2 LINE L1 -62 6102 5514 209 105 0 26 chr3 184758306 184758344 -33278814 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 306 278 117 25 chr3 184758472 184758634 -33278524 + L2 LINE L2 1922 2098 -1216 21 0 0 0 chr3 184759556 184759577 -33277581 + AT_rich Low_complexity Low_complexity 1 21 0 299 166 43 7 chr3 184759877 184760016 -33277142 + (TA)n Simple_repeat Simple_repeat 1 144 0 194 62 31 0 chr3 184760525 184760557 -33276601 + (TTTAG)n Simple_repeat Simple_repeat 4 36 0 213 385 31 0 chr3 184761196 184761292 -33275866 + L3b LINE CR1 1422 1520 -63 2210 64 0 3 chr3 184761626 184761933 -33275225 - AluY SINE Alu 0 306 1 230 165 58 29 chr3 184763299 184763368 -33273790 + (TA)n Simple_repeat Simple_repeat 1 75 -31 2077 115 3 0 chr3 184763368 184763655 -33273503 - AluSx SINE Alu -24 288 1 230 165 58 29 chr3 184763655 184763688 -33273470 + (TA)n Simple_repeat Simple_repeat 75 106 0 208 163 23 0 chr3 184766445 184766488 -33270670 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 492 294 101 105 chr3 184766597 184767074 -33270084 - L2 LINE L2 0 3313 2839 207 100 0 0 chr3 184767975 184768005 -33269153 + (TA)n Simple_repeat Simple_repeat 2 31 0 199 215 31 0 chr3 184769795 184769860 -33267298 + GA-rich Low_complexity Low_complexity 2 68 0 1998 167 85 13 chr3 184771218 184771608 -33265550 + MER47B DNA MER2_type 1 418 0 339 255 67 96 chr3 184772804 184773012 -33264146 + L2 LINE L2 3111 3312 -1 2125 134 0 0 chr3 184773227 184773534 -33263624 + AluSg SINE Alu 4 310 0 665 309 29 101 chr3 184775139 184775721 -33261437 + L2 LINE L2 2269 2808 -506 447 19 0 0 chr3 184775970 184776022 -33261136 + (TA)n Simple_repeat Simple_repeat 2 53 0 269 301 81 15 chr3 184776107 184776243 -33260915 + L2 LINE L2 2862 3006 -266 240 292 21 73 chr3 184776642 184776738 -33260420 + MIR SINE MIR 71 162 -46 349 325 70 6 chr3 184780244 184780401 -33256757 - MIR SINE MIR -73 189 23 969 89 22 17 chr3 184781259 184781318 -33255840 + (GAAA)n Simple_repeat Simple_repeat 1 239 0 969 89 22 17 chr3 184781318 184781497 -33255661 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 25 31 0 0 chr3 184782125 184782157 -33255001 + AT_rich Low_complexity Low_complexity 1 32 0 699 289 126 53 chr3 184782671 184783083 -33254075 + L3 LINE CR1 630 1071 -506 30 27 0 0 chr3 184783344 184783381 -33253777 + AT_rich Low_complexity Low_complexity 1 37 0 2040 44 0 0 chr3 184783929 184784178 -33252980 + L1PA4 LINE L1 5905 6153 -2 374 276 47 57 chr3 184784653 184784845 -33252313 + MIR SINE MIR 28 217 -45 4646 113 4 4 chr3 184786336 184787036 -33250122 + L1PA15 LINE L1 5463 6162 -3 258 32 0 0 chr3 184787041 184787072 -33250086 + (TAAAA)n Simple_repeat Simple_repeat 3 33 0 214 311 40 27 chr3 184788393 184788467 -33248691 - L2 LINE L2 -15 3298 3224 896 220 0 0 chr3 184789103 184789280 -33247878 - FRAM SINE Alu 0 176 1 25 0 0 0 chr3 184790101 184790126 -33247032 + AT_rich Low_complexity Low_complexity 1 25 0 243 0 0 0 chr3 184790960 184790987 -33246171 + (TG)n Simple_repeat Simple_repeat 2 28 0 198 0 0 0 chr3 184792523 184792545 -33244613 + (A)n Simple_repeat Simple_repeat 1 22 0 424 289 24 62 chr3 184793017 184793225 -33243933 + MIR SINE MIR 6 205 -57 638 294 82 22 chr3 184795504 184795820 -33241338 + MER102b DNA MER1_type 1 335 -6 460 264 28 51 chr3 184796118 184796173 -33240985 + MER5B DNA MER1_type 5 60 -118 2171 113 3 3 chr3 184796173 184796475 -33240683 + AluSq SINE Alu 1 302 -11 460 264 28 51 chr3 184796475 184796597 -33240561 + MER5B DNA MER1_type 60 178 0 30 69 0 0 chr3 184804019 184804077 -33233081 + AT_rich Low_complexity Low_complexity 1 58 0 2208 86 28 0 chr3 184805039 184805330 -33231828 - AluSg SINE Alu -11 299 1 2324 90 7 0 chr3 184805814 184806115 -33231043 - AluSp SINE Alu -10 303 1 490 295 65 15 chr3 184806410 184806627 -33230531 + MIR SINE MIR 34 262 0 1581 195 19 59 chr3 184807111 184807485 -33229673 + MLT1B LTR MaLR 32 390 0 51 51 0 0 chr3 184811003 184811082 -33226076 + AT_rich Low_complexity Low_complexity 1 79 0 317 189 316 0 chr3 184812928 184813023 -33224135 - L2 LINE L2 0 3313 3189 279 246 164 0 chr3 184815311 184815421 -33221737 - MIR3 SINE MIR -46 162 35 21 36 0 0 chr3 184815607 184815635 -33221523 + AT_rich Low_complexity Low_complexity 1 28 0 1935 146 10 0 chr3 184816450 184816758 -33220400 + AluSx SINE Alu 1 311 -1 408 239 53 18 chr3 184816823 184816936 -33220222 - MIR3 SINE MIR -7 201 85 270 264 44 22 chr3 184817388 184817479 -33219679 - MIR SINE MIR -56 206 114 1405 161 35 28 chr3 184817955 184818241 -33218917 + AluJo SINE Alu 1 288 -24 767 254 143 5 chr3 184818348 184818565 -33218593 + MIR SINE MIR 15 261 -1 23 86 0 0 chr3 184819716 184819774 -33217384 + AT_rich Low_complexity Low_complexity 1 58 0 2333 88 0 7 chr3 184819926 184820297 -33216861 + AluSq SINE Alu 4 372 0 380 264 0 27 chr3 184820527 184820637 -33216521 - L2 LINE L2 -14 3299 3193 289 250 185 11 chr3 184820803 184820895 -33216263 + L2 LINE L2 2956 3063 -209 373 240 148 45 chr3 184821035 184821311 -33215847 + MLT1J1 LTR MaLR 114 446 0 459 0 0 0 chr3 184821584 184821635 -33215523 + (TA)n Simple_repeat Simple_repeat 1 51 0 2390 81 0 0 chr3 184821636 184821934 -33215224 - AluY SINE Alu -13 298 1 234 0 0 0 chr3 184822027 184822053 -33215105 + (CA)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr3 184822335 184822357 -33214801 + AT_rich Low_complexity Low_complexity 1 22 0 328 274 75 9 chr3 184823038 184823144 -33214014 - MIR3 SINE MIR -5 203 91 290 164 0 16 chr3 184825382 184825443 -33211715 + GA-rich Low_complexity Low_complexity 4 63 0 634 265 148 45 chr3 184825445 184825804 -33211354 + MLT1J LTR MaLR 103 498 -13 379 309 41 0 chr3 184825828 184825951 -33211207 + MIR3 SINE MIR 44 171 -37 216 0 0 0 chr3 184828474 184828498 -33208660 + (TG)n Simple_repeat Simple_repeat 2 25 0 183 114 0 0 chr3 184828878 184828913 -33208245 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 25 31 0 0 chr3 184828923 184828955 -33208203 + AT_rich Low_complexity Low_complexity 1 32 0 1808 70 12 0 chr3 184830030 184830272 -33206886 + L1PA6 LINE L1 5907 6151 -3 23 0 0 0 chr3 184831013 184831036 -33206122 + AT_rich Low_complexity Low_complexity 1 23 0 2194 91 17 3 chr3 184832417 184832714 -33204444 - AluSx SINE Alu -11 301 1 319 164 16 0 chr3 184833144 184833163 -33203995 + MER3 DNA MER1_type 29 48 -161 859 180 88 21 chr3 184833163 184833357 -33203801 - MER3 DNA MER1_type -1 208 2 2269 101 0 3 chr3 184834772 184835078 -33202080 + AluSx SINE Alu 1 305 -7 333 0 0 0 chr3 184835500 184835537 -33201621 + (CA)n Simple_repeat Simple_repeat 2 38 0 213 323 0 0 chr3 184836533 184836595 -33200563 + L2 LINE L2 3250 3311 -2 435 238 30 0 chr3 184839611 184839712 -33197446 + MER5A DNA MER1_type 9 112 -77 1790 183 7 3 chr3 184840031 184840321 -33196837 + AluJb SINE Alu 1 291 -21 204 125 0 0 chr3 184841056 184841088 -33196070 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 413 167 30 45 chr3 184841200 184841332 -33195826 - Charlie7 DNA MER1_type -2 2610 2481 213 429 38 0 chr3 184841558 184841663 -33195495 + L2 LINE L2 3156 3264 -8 311 168 0 4 chr3 184841723 184841927 -33195231 + AluJo SINE Alu 1 292 -10 198 0 0 0 chr3 184843074 184843096 -33194062 + (CA)n Simple_repeat Simple_repeat 1 22 0 202 239 0 0 chr3 184843097 184843143 -33194015 + (TA)n Simple_repeat Simple_repeat 2 47 0 208 363 29 0 chr3 184843158 184843260 -33193898 - MIR SINE MIR -81 181 77 185 276 17 17 chr3 184847566 184847624 -33189534 + L2 LINE L2 3211 3268 -4 489 362 35 0 chr3 184849539 184849796 -33187362 - L3b LINE CR1 -160 1423 1158 22 0 0 0 chr3 184849875 184849897 -33187261 + AT_rich Low_complexity Low_complexity 1 22 0 1758 139 36 11 chr3 184850573 184850853 -33186305 + AluSx SINE Alu 14 300 -12 200 243 0 0 chr3 184851492 184851529 -33185629 - MIR SINE MIR -87 121 85 954 258 206 39 chr3 184851687 184852316 -33184842 + L2 LINE L2 2580 3311 -2 192 97 0 0 chr3 184854406 184854437 -33182721 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 34 24 0 0 chr3 184856127 184856168 -33180990 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr3 184857025 184857055 -33180103 + AT_rich Low_complexity Low_complexity 1 30 0 183 328 0 30 chr3 184857982 184858049 -33179109 + MIR SINE MIR 49 113 -149 1120 318 84 21 chr3 184858900 184859413 -33177745 - L3 LINE CR1 -97 1480 936 2223 119 0 3 chr3 184861087 184861380 -33175778 + AluSx SINE Alu 2 293 -19 215 250 0 0 chr3 184861875 184861923 -33175235 - L2 LINE L2 0 3313 3266 24 0 0 0 chr3 184862783 184862807 -33174351 + AT_rich Low_complexity Low_complexity 1 24 0 28 29 0 0 chr3 184862938 184862973 -33174185 + AT_rich Low_complexity Low_complexity 1 35 0 206 162 0 0 chr3 184863395 184863432 -33173726 - L2 LINE L2 -22 3250 3214 24 53 0 0 chr3 184864731 184864769 -33172389 + AT_rich Low_complexity Low_complexity 1 38 0 2003 126 4 0 chr3 184864905 184865182 -33171976 + AluSq SINE Alu 1 278 -35 1029 306 117 27 chr3 184865208 184865797 -33171361 + L2 LINE L2 1986 2627 -687 1445 188 88 0 chr3 184865838 184866099 -33171059 + AluJb SINE Alu 24 307 -5 238 426 28 0 chr3 184866321 184866537 -33170621 + L2 LINE L2 2755 2976 -338 349 336 50 7 chr3 184866655 184866795 -33170363 + L2 LINE L2 3168 3313 0 496 284 74 11 chr3 184868236 184868412 -33168746 + MIR3 SINE MIR 19 205 -3 325 237 108 11 chr3 184868741 184868834 -33168324 - L2 LINE L2 -3 3269 3168 250 242 15 0 chr3 184868861 184868927 -33168231 + MER116 DNA Mariner 14 80 0 3980 276 95 28 chr3 184870425 184870871 -33166287 - L2 LINE L2 -374 2940 2526 2496 42 0 32 chr3 184870871 184871183 -33165975 - AluY SINE Alu -9 302 1 3980 276 95 28 chr3 184871183 184872292 -33164866 - L2 LINE L2 -788 2526 1280 327 245 20 48 chr3 184873079 184873226 -33163932 + GA-rich Low_complexity Low_complexity 3 145 0 399 287 178 6 chr3 184873440 184873614 -33163544 - MIR SINE MIR -11 251 48 1885 168 0 7 chr3 184875067 184875358 -33161800 - AluJb SINE Alu -23 289 1 5525 70 8 11 chr3 184876239 184877322 -33159836 + L1PA7 LINE L1 4601 5679 -475 2268 101 3 0 chr3 184877322 184877618 -33159540 + AluSx SINE Alu 1 297 -15 5525 70 8 11 chr3 184877618 184877961 -33159197 + L1PA7 LINE L1 5679 6021 -133 1933 231 17 0 chr3 184878105 184878516 -33158642 - MER69 DNA AcHobo -2003 523 106 468 214 7 36 chr3 184878518 184878658 -33158500 + L1ME3A LINE L1 6035 6170 0 253 184 92 46 chr3 184878663 184878730 -33158428 - MER69 DNA AcHobo -2418 108 35 2185 117 0 7 chr3 184878730 184879029 -33158129 + AluSx SINE Alu 1 297 -15 253 184 92 46 chr3 184879029 184879048 -33158110 - MER69 DNA AcHobo -2491 35 18 406 294 49 49 chr3 184879049 184879212 -33157946 + MIR3 SINE MIR 19 181 -27 1769 174 7 0 chr3 184880026 184880314 -33156844 - AluJb SINE Alu -21 291 2 815 189 27 7 chr3 184880846 184880994 -33156164 + Tigger3(Golem) DNA MER2_type 2877 3027 -2 1718 109 80 86 chr3 184881907 184882209 -33154949 + AluSq SINE Alu 1 300 -13 198 0 0 0 chr3 184882237 184882259 -33154899 + (TAGA)n Simple_repeat Simple_repeat 2 23 0 181 270 201 29 chr3 184882304 184882508 -33154650 - L2 LINE L2 -2777 537 299 21 0 0 0 chr3 184883252 184883273 -33153885 + AT_rich Low_complexity Low_complexity 1 21 0 458 228 110 0 chr3 184883560 184883687 -33153471 + MIR SINE MIR 56 196 -66 183 309 79 40 chr3 184883789 184883915 -33153243 - MIR3 SINE MIR -19 189 59 * 410 283 103 36 chr3 184883848 184884071 -33153087 - L2 LINE L2 -1392 1922 1685 355 290 65 0 chr3 184884127 184884234 -33152924 + MER94 DNA DNA 21 134 0 198 302 94 19 chr3 184884820 184884926 -33152232 - MIR SINE MIR -129 133 20 2119 109 0 3 chr3 184885132 184885425 -33151733 + AluSg SINE Alu 1 292 -18 2153 122 6 6 chr3 184886588 184886899 -33150259 + AluSx SINE Alu 1 311 -1 379 218 153 0 chr3 184888022 184888146 -33149012 - MIR SINE MIR -6 256 114 192 270 70 35 chr3 184888390 184888505 -33148653 - MIR SINE MIR -89 173 55 295 283 80 89 chr3 184889806 184890131 -33147027 - L2 LINE L2 -35 3237 2916 24 0 0 0 chr3 184891203 184891227 -33145931 + AT_rich Low_complexity Low_complexity 1 24 0 2190 123 0 7 chr3 184891230 184891540 -33145618 + AluSg SINE Alu 1 308 -2 1723 191 7 0 chr3 184893903 184894197 -33142961 - AluJb SINE Alu -16 296 1 26 0 0 0 chr3 184894362 184894388 -33142770 + AT_rich Low_complexity Low_complexity 1 26 0 209 208 0 0 chr3 184894744 184894792 -33142366 + (TA)n Simple_repeat Simple_repeat 1 48 0 447 290 59 30 chr3 184894956 184895125 -33142033 - MIR SINE MIR -24 238 65 256 298 153 15 chr3 184895153 184895284 -33141874 + MIR SINE MIR 59 207 -55 28 0 0 0 chr3 184895869 184895897 -33141261 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 184897240 184897268 -33139890 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr3 184897498 184897541 -33139617 + AT_rich Low_complexity Low_complexity 1 43 0 596 149 0 9 chr3 184897691 184897805 -33139353 + (TTCC)n Simple_repeat Simple_repeat 3 115 0 22 0 0 0 chr3 184897915 184897937 -33139221 + AT_rich Low_complexity Low_complexity 1 22 0 582 271 32 0 chr3 184898266 184898417 -33138741 - MER5B DNA MER1_type -3 186 16 692 340 34 41 chr3 184901968 184902356 -33134802 + L2 LINE L2 2869 3253 -19 288 0 0 0 chr3 184902474 184902506 -33134652 + (TG)n Simple_repeat Simple_repeat 2 33 0 221 333 0 18 chr3 184902644 184902701 -33134457 + L2 LINE L2 3138 3193 -79 200 303 56 45 chr3 184902938 184903027 -33134131 + MIR SINE MIR 167 256 -6 753 164 43 0 chr3 184903147 184903287 -33133871 + MER5A DNA MER1_type 44 189 0 429 233 145 64 chr3 184903383 184903555 -33133603 + MER5A DNA MER1_type 4 189 0 3048 71 50 34 chr3 184905091 184905333 -33131825 + L1MA1 LINE L1 5817 6053 -249 2287 93 0 3 chr3 184905333 184905633 -33131525 + AluSc SINE Alu 1 299 -10 3048 71 50 34 chr3 184905633 184905868 -33131290 + L1MA1 LINE L1 6053 6302 0 23 0 0 0 chr3 184906140 184906163 -33130995 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 184906361 184906382 -33130776 + AT_rich Low_complexity Low_complexity 1 21 0 518 238 122 14 chr3 184908362 184908509 -33128649 + MIR3 SINE MIR 18 180 -28 317 365 0 0 chr3 184910382 184910478 -33126680 + MIR SINE MIR 29 124 -84 344 343 104 36 chr3 184910512 184910763 -33126395 + L1MC4a LINE L1 5349 5616 -2192 724 246 65 47 chr3 184910769 184911046 -33126112 + L1MC4a LINE L1 5683 5964 -1844 22 0 0 0 chr3 184911145 184911167 -33125991 + AT_rich Low_complexity Low_complexity 1 22 0 235 185 19 19 chr3 184912162 184912216 -33124942 - MARNA DNA Mariner -522 64 11 221 233 0 0 chr3 184912921 184912964 -33124194 + C-rich Low_complexity Low_complexity 6 48 0 25 65 0 0 chr3 184913841 184913887 -33123271 + AT_rich Low_complexity Low_complexity 1 46 0 543 312 11 32 chr3 184914090 184914276 -33122882 + MIR3 SINE MIR 4 185 -23 999 202 96 14 chr3 184914355 184914637 -33122521 + MER33 DNA MER1_type 12 316 -8 24 85 0 0 chr3 184914982 184915041 -33122117 + AT_rich Low_complexity Low_complexity 1 59 0 27 0 0 0 chr3 184917527 184917554 -33119604 + AT_rich Low_complexity Low_complexity 1 27 0 284 226 11 32 chr3 184921646 184921739 -33115419 + A-rich Low_complexity Low_complexity 3 93 0 308 75 0 0 chr3 184924102 184924142 -33113016 - L1P LINE L1 -6013 133 94 312 133 0 0 chr3 184924164 184924224 -33112934 + (A)n Simple_repeat Simple_repeat 1 60 0 894 228 20 63 chr3 184925378 184925632 -33111526 - MIR SINE MIR -18 244 2 318 44 22 0 chr3 184926011 184926056 -33111102 - MADE1 DNA Mariner 0 80 35 22 0 0 0 chr3 184932295 184932317 -33104841 + AT_rich Low_complexity Low_complexity 1 22 0 2039 153 0 10 chr3 184933216 184933523 -33103635 - AluJb SINE Alu -8 304 1 5519 151 38 20 chr3 184934029 184935388 -33101770 + L1MA9 LINE L1 4775 6172 -140 246 32 0 0 chr3 184935388 184935419 -33101739 + (CA)n Simple_repeat Simple_repeat 2 32 0 5519 151 38 20 chr3 184935419 184935562 -33101596 + L1MA9 LINE L1 6172 6311 -1 511 288 71 28 chr3 184936580 184936792 -33100366 - MIR SINE MIR -10 252 32 617 101 91 0 chr3 184937445 184937544 -33099614 - L1MA2 LINE L1 0 6304 6197 196 317 97 23 chr3 184937544 184937669 -33099489 - MIR SINE MIR -95 167 33 279 157 0 0 chr3 184937740 184937791 -33099367 + (TTCA)n Simple_repeat Simple_repeat 3 53 0 1375 204 2 106 chr3 184937815 184938001 -33099157 + MLT1A2 LTR MaLR 1 122 -252 249 33 0 0 chr3 184938001 184938031 -33099127 + (TC)n Simple_repeat Simple_repeat 1 30 0 1375 204 2 106 chr3 184938031 184938261 -33098897 + MLT1A2 LTR MaLR 122 374 0 1339 198 52 52 chr3 184938624 184938932 -33098226 + AluJo SINE Alu 1 308 -4 16286 100 0 0 chr3 184939033 184942208 -33094950 + L1PA7 LINE L1 2975 6154 0 320 43 22 0 chr3 184942212 184942258 -33094900 + (GGAA)n Simple_repeat Simple_repeat 3 49 0 1352 43 0 5 chr3 184942262 184942472 -33094686 + (GAAA)n Simple_repeat Simple_repeat 1 209 0 244 324 44 22 chr3 184942500 184942636 -33094522 - L2 LINE L2 -811 2503 2365 211 352 0 0 chr3 184942703 184942757 -33094401 + L2 LINE L2 3210 3263 -9 202 284 81 0 chr3 184945815 184945889 -33091269 + L3 LINE CR1 1227 1306 -271 959 177 33 17 chr3 184946574 184946755 -33090403 + FRAM SINE Alu 1 176 0 274 311 122 27 chr3 184946757 184946905 -33090253 + L3 LINE CR1 1407 1568 -9 24 53 0 0 chr3 184948056 184948094 -33089064 + AT_rich Low_complexity Low_complexity 1 38 0 2088 139 0 3 chr3 184948691 184948994 -33088164 + AluSx SINE Alu 1 302 -10 391 277 164 40 chr3 184950337 184950691 -33086467 - L1ME4a LINE L1 -188 5933 5536 255 254 28 0 chr3 184953994 184954065 -33083093 + MIR3 SINE MIR 112 184 -24 375 298 31 75 chr3 184956355 184956516 -33080642 - L2 LINE L2 0 3272 3119 210 105 53 0 chr3 184957951 184957989 -33079169 + (TTG)n Simple_repeat Simple_repeat 3 42 0 249 353 25 17 chr3 184959052 184959171 -33077987 + L2 LINE L2 3145 3264 -8 533 230 0 96 chr3 184959689 184959824 -33077334 + L2 LINE L2 3192 3313 0 257 290 97 43 chr3 184960101 184960194 -33076964 + MIR SINE MIR 41 138 -70 1366 189 25 16 chr3 184960200 184960517 -33076641 + MER33 DNA MER1_type 5 324 0 1920 141 7 10 chr3 184960558 184960864 -33076294 + AluSx SINE Alu 1 305 -7 377 282 167 28 chr3 184962560 184962776 -33074382 - L2 LINE L2 -48 3265 3020 256 129 18 0 chr3 184963084 184963134 -33074024 + L1PA6 LINE L1 6095 6148 -6 338 346 44 89 chr3 184965262 184965744 -33071414 - L2 LINE L2 -1 3271 2812 1311 121 0 0 chr3 184966365 184966539 -33070619 + AluSg/x SINE Alu 124 297 -15 345 138 11 23 chr3 184969045 184969132 -33068026 + CT-rich Low_complexity Low_complexity 1 86 0 563 332 53 11 chr3 184970081 184970271 -33066887 + MIR3 SINE MIR 6 203 -5 371 224 54 68 chr3 184970471 184970618 -33066540 - MIR SINE MIR -16 246 102 2118 109 7 26 chr3 184970708 184971012 -33066146 - AluSg1 SINE Alu -8 301 4 200 239 60 75 chr3 184971236 184971303 -33065855 - L2 LINE L2 -2057 1257 1192 305 321 42 36 chr3 184972562 184972730 -33064428 + MIR SINE MIR 20 188 -74 337 269 67 19 chr3 184972927 184973031 -33064127 + MIR SINE MIR 46 154 -108 239 235 0 0 chr3 184974905 184974956 -33062202 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1954 152 0 0 chr3 184975579 184975869 -33061289 + AluSx SINE Alu 3 292 -20 2194 132 0 0 chr3 184975872 184976182 -33060976 + AluSx SINE Alu 1 310 -2 34 42 0 0 chr3 184976182 184976230 -33060928 + AT_rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr3 184976510 184976534 -33060624 + AT_rich Low_complexity Low_complexity 1 24 0 28352 122 32 71 chr3 184976931 184980651 -33056507 + L1PA3 LINE L1 12 3423 -2731 7685 23 1 0 chr3 184980651 184981988 -33055170 + L1PA3 LINE L1 4817 6154 -1 28352 122 32 71 chr3 184981988 184984066 -33053092 + L1PA3 LINE L1 3423 5580 -574 211 350 0 0 chr3 184984258 184984318 -33052840 + L3 LINE CR1 1515 1574 -3 301 303 160 43 chr3 184986608 184986809 -33050349 + MIR SINE MIR 17 236 -26 610 217 136 0 chr3 184986889 184987049 -33050109 - MER5A DNA MER1_type -1 188 4 181 368 62 21 chr3 184987549 184987693 -33049465 - MIR3 SINE MIR -41 167 18 338 296 189 0 chr3 184989383 184989542 -33047616 - MIR SINE MIR -10 252 64 393 233 178 47 chr3 184989596 184989961 -33047197 + L1ME4a LINE L1 5706 6118 -3 24 0 0 0 chr3 184990103 184990127 -33047031 + AT_rich Low_complexity Low_complexity 1 24 0 443 244 142 8 chr3 184990736 184990863 -33046295 - MIR SINE MIR -12 250 107 1164 145 24 34 chr3 184991701 184991908 -33045250 + MLT1B LTR MaLR 6 210 -180 895 139 0 0 chr3 184991910 184992039 -33045119 + AluSg/x SINE Alu 143 271 -39 646 136 0 76 chr3 184992047 184992108 -33045050 + MLT1B LTR MaLR 282 331 -59 1784 142 58 21 chr3 184992108 184992433 -33044725 - MER1B DNA MER1_type 0 337 1 646 136 0 76 chr3 184992433 184992489 -33044669 + MLT1B LTR MaLR 331 390 0 207 324 19 48 chr3 184992731 184992836 -33044322 - L2 LINE L2 -35 3237 3136 390 336 9 0 chr3 184993289 184993402 -33043756 + L2 LINE L2 3156 3269 -3 307 303 11 74 chr3 184993561 184993736 -33043422 + MIR SINE MIR 59 222 -40 500 326 119 4 chr3 184995722 184995949 -33041209 - Charlie8 DNA MER1_type -2161 256 4 2134 120 3 0 chr3 184996032 184996324 -33040834 - AluSx SINE Alu -19 293 1 1996 123 4 0 chr3 184997053 184997329 -33039829 + AluSq SINE Alu 1 277 -36 253 89 0 36 chr3 184997329 184997385 -33039773 + (GAAA)n Simple_repeat Simple_repeat 1 54 0 893 140 17 11 chr3 184997403 184997582 -33039576 + GA-rich Low_complexity Low_complexity 1 180 0 290 298 96 10 chr3 184997605 184997709 -33039449 - MER5B DNA MER1_type 0 178 66 208 267 162 38 chr3 184997630 184997735 -33039423 + MER5A DNA MER1_type 43 160 -29 * 2247 109 3 0 chr3 185000112 185000416 -33036742 - AluSp SINE Alu -8 305 1 264 275 0 14 chr3 185000545 185000614 -33036544 + L2 LINE L2 3246 3313 0 265 349 77 12 chr3 185000970 185001139 -33036019 - MIR SINE MIR -82 180 1 731 296 69 0 chr3 185001834 185002050 -33035108 - MIR SINE MIR -28 234 4 696 226 18 6 chr3 185002209 185002377 -33034781 - LTR16C LTR ERVL -24 467 298 382 213 85 14 chr3 185002834 185002975 -33034183 + L1M4 LINE L1 5119 5269 -877 41 21 0 0 chr3 185002975 185003023 -33034135 + AT_rich Low_complexity Low_complexity 1 48 0 274 224 96 16 chr3 185003070 185003195 -33033963 + L1ME3A LINE L1 5135 5269 -877 44 35 0 0 chr3 185003195 185003253 -33033905 + AT_rich Low_complexity Low_complexity 1 58 0 851 266 200 20 chr3 185003253 185003794 -33033364 + L1ME3A LINE L1 5257 5894 -276 23 33 0 0 chr3 185004117 185004147 -33033011 + AT_rich Low_complexity Low_complexity 1 30 0 198 308 181 6 chr3 185004251 185004433 -33032725 - L2 LINE L2 -211 3061 2848 2067 126 3 25 chr3 185005581 185005764 -33031394 - AluSx SINE Alu 0 312 126 390 21 0 0 chr3 185005764 185005811 -33031347 + (TTTTG)n Simple_repeat Simple_repeat 1 47 0 2102 128 0 0 chr3 185005811 185006092 -33031066 - AluSx SINE Alu -31 281 1 2067 126 3 25 chr3 185006092 185006224 -33030934 - AluSx SINE Alu -184 128 3 324 232 85 0 chr3 185006784 185006866 -33030292 + L2 LINE L2 3176 3264 -8 2703 73 3 0 chr3 185008167 185008510 -33028648 + THE1A LTR MaLR 1 344 -11 11387 93 24 0 chr3 185008512 185010055 -33027103 + THE1A-int LTR MaLR 1 1580 0 2463 69 69 0 chr3 185010055 185010387 -33026771 + THE1A LTR MaLR 1 355 0 441 249 147 28 chr3 185010529 185010706 -33026452 - MIR SINE MIR -56 206 9 366 328 126 78 chr3 185011396 185011808 -33025350 - L2 LINE L2 -17 3255 2824 331 316 107 12 chr3 185012219 185012387 -33024771 - MIR SINE MIR -48 214 31 33 43 0 0 chr3 185016175 185016222 -33020936 + AT_rich Low_complexity Low_complexity 1 47 0 188 276 69 52 chr3 185016376 185016492 -33020666 - L2 LINE L2 -1 3271 3154 183 80 0 0 chr3 185016598 185016623 -33020535 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 344 237 53 111 chr3 185019808 185019998 -33017160 + Charlie8 DNA MER1_type 1 179 -2238 336 223 248 16 chr3 185020410 185020531 -33016627 + MER5A DNA MER1_type 12 160 -29 450 265 83 0 chr3 185024272 185024404 -33012754 - MIR3 SINE MIR 0 208 66 197 381 113 12 chr3 185025286 185025446 -33011712 - MIR3 SINE MIR -7 201 26 257 336 26 35 chr3 185026297 185026413 -33010745 + L2 LINE L2 3150 3264 -8 24 32 0 0 chr3 185027428 185027459 -33009699 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr3 185028815 185028837 -33008321 + AT_rich Low_complexity Low_complexity 1 22 0 1033 218 22 70 chr3 185029039 185029310 -33007848 + MIR SINE MIR 1 258 -4 21 0 0 0 chr3 185029310 185029331 -33007827 + AT_rich Low_complexity Low_complexity 1 21 0 505 244 114 0 chr3 185032304 185032427 -33004731 + L2 LINE L2 3136 3272 0 211 309 12 12 chr3 185032438 185032522 -33004636 + MIR SINE MIR 120 203 -59 343 351 47 66 chr3 185032837 185033156 -33004002 - L2 LINE L2 -45 3227 2915 1507 136 3 121 chr3 185034820 185035159 -33001999 - AluJo SINE Alu -3 299 1 929 101 0 0 chr3 185035934 185036072 -33001086 + L1MA3 LINE L1 6168 6305 0 631 135 10 0 chr3 185036168 185036264 -33000894 + FLAM_A SINE Alu 35 131 -11 1326 112 11 8 chr3 185036276 185036634 -33000524 + (GGAAA)n Simple_repeat Simple_repeat 1 360 0 273 319 32 51 chr3 185036956 185037113 -33000045 + MER5B DNA MER1_type 1 154 -24 2231 118 0 0 chr3 185037356 185037662 -32999496 + AluSc SINE Alu 1 306 -3 207 0 0 0 chr3 185037767 185037790 -32999368 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 25 31 0 0 chr3 185038366 185038398 -32998760 + AT_rich Low_complexity Low_complexity 1 32 0 363 317 57 0 chr3 185038749 185038891 -32998267 - MIR SINE MIR -63 145 34 225 0 0 0 chr3 185040950 185040975 -32996183 + (TG)n Simple_repeat Simple_repeat 2 26 0 * 396 0 0 0 chr3 185040974 185041018 -32996140 + (TA)n Simple_repeat Simple_repeat 1 44 0 530 280 56 115 chr3 185042836 185043134 -32994024 - L2 LINE L2 -2 3270 3026 219 36 0 0 chr3 185043134 185043162 -32993996 + (TG)n Simple_repeat Simple_repeat 1 28 0 530 280 56 115 chr3 185043162 185043433 -32993725 - L2 LINE L2 -246 3026 2741 225 0 0 0 chr3 185043521 185043546 -32993612 + (A)n Simple_repeat Simple_repeat 1 25 0 445 255 176 10 chr3 185043684 185043888 -32993270 - MIR SINE MIR -5 257 20 1836 146 0 17 chr3 185045168 185045456 -32991702 + AluSx SINE Alu 30 312 0 207 0 0 0 chr3 185045533 185045556 -32991602 + (TG)n Simple_repeat Simple_repeat 2 24 0 2506 52 0 10 chr3 185046194 185046501 -32990657 - AluY SINE Alu -6 305 2 231 61 0 0 chr3 185047054 185047087 -32990071 + (TTTTTA)n Simple_repeat Simple_repeat 3 35 0 246 181 48 36 chr3 185048096 185048179 -32988979 + GA-rich Low_complexity Low_complexity 4 87 0 1983 145 0 0 chr3 185048856 185049163 -32987995 - AluSx SINE Alu 0 307 1 296 309 146 8 chr3 185049393 185049516 -32987642 - MIR3 SINE MIR -3 205 66 964 99 0 38 chr3 185049687 185049922 -32987236 + (TA)n Simple_repeat Simple_repeat 1 225 0 511 324 6 0 chr3 185050599 185050772 -32986386 + L1ME2 LINE L1 898 1071 -5345 24 0 0 0 chr3 185050823 185050847 -32986311 + AT_rich Low_complexity Low_complexity 1 24 0 387 322 39 10 chr3 185050939 185051147 -32986011 + L1ME2 LINE L1 1810 2023 -4584 473 319 78 7 chr3 185051473 185051709 -32985449 + L1ME2 LINE L1 2275 2521 -3905 649 244 136 89 chr3 185051756 185052185 -32984973 + L1ME2 LINE L1 2546 2953 -3473 1968 134 0 60 chr3 185052185 185052499 -32984659 + AluSx SINE Alu 1 295 -17 649 244 136 89 chr3 185052499 185052868 -32984290 + L1ME2 LINE L1 2953 3382 -3044 325 280 49 7 chr3 185053028 185053171 -32983987 + L1ME2 LINE L1 3625 3773 -2653 726 278 78 59 chr3 185053288 185053954 -32983204 + L1ME2 LINE L1 4863 5541 -885 759 302 59 44 chr3 185054017 185054590 -32982568 + L1ME2 LINE L1 5646 6227 -217 1064 247 127 0 chr3 185054840 185055099 -32982059 - AluJo SINE Alu -10 292 1 26 0 0 0 chr3 185055360 185055386 -32981772 + AT_rich Low_complexity Low_complexity 1 26 0 2097 112 7 0 chr3 185056622 185056908 -32980250 + AluSx SINE Alu 1 288 -24 195 220 60 20 chr3 185057100 185057150 -32980008 - L2 LINE L2 0 3272 3221 311 202 12 0 chr3 185057449 185057533 -32979625 + (TA)n Simple_repeat Simple_repeat 1 85 0 190 105 0 140 chr3 185058648 185058705 -32978453 - MER5B DNA MER1_type -104 74 26 816 246 119 12 chr3 185058900 185059152 -32978006 - L3b LINE CR1 -201 1382 1104 503 234 117 13 chr3 185059762 185059916 -32977242 + MIR SINE MIR 69 238 -24 282 328 105 54 chr3 185061057 185061279 -32975879 + L2 LINE L2 2410 2656 -658 2305 100 0 37 chr3 185061279 185061600 -32975558 - AluSx SINE Alu -3 309 1 282 328 105 54 chr3 185061600 185061709 -32975449 + L2 LINE L2 2656 2758 -556 22 56 0 0 chr3 185062182 185062218 -32974940 + AT_rich Low_complexity Low_complexity 1 36 0 238 275 87 51 chr3 185062826 185063160 -32973998 + L1MEd LINE L1 873 1218 -4901 259 249 46 128 chr3 185063218 185063499 -32973659 + HAL1 LINE L1 1403 1660 -847 225 0 0 0 chr3 185064010 185064035 -32973123 + (A)n Simple_repeat Simple_repeat 1 25 0 347 299 87 35 chr3 185064084 185064315 -32972843 + HAL1 LINE L1 1526 1768 -739 21 57 0 0 chr3 185064722 185064757 -32972401 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr3 185066489 185066514 -32970644 + AT_rich Low_complexity Low_complexity 1 25 0 360 273 16 8 chr3 185067068 185067189 -32969969 + LTR67 LTR ERVL 428 549 -8 433 320 72 11 chr3 185067667 185067848 -32969310 - MIR SINE MIR 0 262 71 378 0 0 0 chr3 185068813 185068855 -32968303 + (TG)n Simple_repeat Simple_repeat 2 43 0 1185 138 30 105 chr3 185070064 185070369 -32966789 - L1MA9 LINE L1 -3 6309 6028 192 77 0 0 chr3 185071264 185071290 -32965868 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2664 36 3 0 chr3 185072313 185072622 -32964536 - AluY SINE Alu -1 310 1 240 122 0 0 chr3 185073164 185073205 -32963953 + (CA)n Simple_repeat Simple_repeat 2 42 0 28 0 0 0 chr3 185073343 185073371 -32963787 + AT_rich Low_complexity Low_complexity 1 28 0 2817 149 17 30 chr3 185073987 185074516 -32962642 - L1MB3 LINE L1 -1 6182 5661 364 340 21 28 chr3 185075946 185076090 -32961068 - MIR3 SINE MIR -35 173 31 2141 121 0 22 chr3 185076142 185076455 -32960703 + AluSx SINE Alu 1 306 -6 206 341 67 15 chr3 185076500 185076635 -32960523 - L3b LINE CR1 -321 1262 1121 334 241 24 0 chr3 185077256 185077339 -32959819 + L2 LINE L2 3229 3313 0 261 286 77 11 chr3 185079331 185079422 -32957736 + L2 LINE L2 3176 3272 0 197 355 200 19 chr3 185080054 185080209 -32956949 - MIR SINE MIR -77 185 3 21 36 0 0 chr3 185080467 185080495 -32956663 + AT_rich Low_complexity Low_complexity 1 28 0 250 365 26 9 chr3 185081242 185081357 -32955801 - MIR SINE MIR -141 121 5 183 236 0 55 chr3 185082432 185082487 -32954671 - L2 LINE L2 -41 3231 3180 2295 74 0 0 chr3 185082637 185082944 -32954214 + AluY SINE Alu 1 307 0 201 74 0 0 chr3 185083251 185083278 -32953880 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2301 124 16 32 chr3 185083330 185083700 -32953458 + THE1B LTR MaLR 1 364 0 245 321 36 0 chr3 185083882 185083966 -32953192 - MIR3 SINE MIR -1 207 121 845 249 117 66 chr3 185084527 185084980 -32952178 + MLT1K LTR MaLR 1 476 0 328 301 148 23 chr3 185085508 185085684 -32951474 + MIR SINE MIR 53 250 -12 853 188 32 16 chr3 185086230 185086416 -32950742 + MER5A DNA MER1_type 1 189 0 1828 166 58 0 chr3 185086436 185086761 -32950397 - MER2 DNA MER2_type 0 344 1 545 132 57 0 chr3 185088356 185088462 -32948696 + MER53 DNA DNA 3 114 -75 183 156 0 0 chr3 185088469 185088501 -32948657 + (TA)n Simple_repeat Simple_repeat 1 32 0 313 242 11 44 chr3 185088520 185088611 -32948547 - L1MC4 LINE L1 -1341 6701 6614 300 209 33 44 chr3 185088540 185088631 -32948527 + L1MC4 LINE L1 6614 6703 -1339 * 330 205 0 0 chr3 185088639 185088722 -32948436 + (TA)n Simple_repeat Simple_repeat 2 84 0 351 105 0 0 chr3 185088722 185088779 -32948379 + MER53 DNA DNA 129 185 -4 190 286 214 52 chr3 185088894 185089048 -32948110 - MIR SINE MIR -80 182 4 2275 91 7 3 chr3 185090406 185090704 -32946454 + AluSq SINE Alu 1 299 -14 346 305 40 103 chr3 185094496 185094860 -32942298 - L2 LINE L2 -1 3271 2931 333 293 35 75 chr3 185094860 185095034 -32942124 - MER5A DNA MER1_type 0 189 23 477 269 87 43 chr3 185095288 185095503 -32941655 + MIR SINE MIR 12 236 -26 328 309 83 28 chr3 185096117 185096298 -32940860 - MIR SINE MIR -70 192 2 303 319 22 51 chr3 185096544 185096682 -32940476 + MIR SINE MIR 10 143 -119 894 131 82 60 chr3 185096790 185096973 -32940185 - MER5A DNA MER1_type 0 189 3 373 308 8 0 chr3 185099049 185099169 -32937989 - MER94 DNA DNA -8 126 6 755 245 97 21 chr3 185099310 185099547 -32937611 - MIR SINE MIR -1 261 7 772 269 40 46 chr3 185100114 185100464 -32936694 + L2 LINE L2 2966 3313 0 401 193 235 29 chr3 185100478 185100634 -32936524 + MIR SINE MIR 68 252 -10 180 0 0 0 chr3 185101007 185101027 -32936131 + (T)n Simple_repeat Simple_repeat 1 20 0 422 244 20 92 chr3 185101543 185101718 -32935440 - MIR SINE MIR -63 145 16 787 218 0 35 chr3 185102619 185102789 -32934369 - MER5B DNA MER1_type -13 165 2 223 261 154 22 chr3 185103252 185103343 -32933815 + MIR SINE MIR 48 151 -57 547 296 156 7 chr3 185104200 185104508 -32932650 + L2 LINE L2 2481 2834 -480 212 335 190 25 chr3 185104743 185105295 -32931863 + L2 LINE L2 2251 2893 -421 195 195 0 0 chr3 185105261 185105302 -32931856 - L2 LINE L2 0 3313 3273 * 367 302 116 32 chr3 185105457 185105646 -32931512 + L2 LINE L2 2973 3177 -95 517 250 223 0 chr3 185105741 185105889 -32931269 - MER5A DNA MER1_type 0 189 9 21 57 0 0 chr3 185106833 185106868 -32930290 + AT_rich Low_complexity Low_complexity 1 35 0 1434 167 64 60 chr3 185107952 185108233 -32928925 + AluJo SINE Alu 1 282 -30 1786 112 0 8 chr3 185108541 185108783 -32928375 - AluSg/x SINE Alu -8 304 65 281 274 42 21 chr3 185108851 185108946 -32928212 + MIR SINE MIR 160 256 -6 1533 55 0 5 chr3 185109016 185109218 -32927940 - L1PA8 LINE L1 -507 5661 5461 3726 68 0 4 chr3 185109218 185109707 -32927451 + L1PA8 LINE L1 5681 6167 -5 311 276 11 11 chr3 185111095 185111182 -32925976 - MIR3 SINE MIR -39 169 83 218 105 26 0 chr3 185111367 185111405 -32925753 + GA-rich Low_complexity Low_complexity 2 40 0 2067 114 139 34 chr3 185111702 185112089 -32925069 + MSTA LTR MaLR 1 428 0 293 304 53 12 chr3 185112132 185112238 -32924920 + MIR SINE MIR 13 121 -87 1287 208 25 59 chr3 185112248 185112652 -32924506 + MLT1C LTR MaLR 1 390 -77 288 274 65 59 chr3 185113429 185113582 -32923576 - MIR SINE MIR -13 249 96 2455 90 7 0 chr3 185113621 185113931 -32923227 - AluSx SINE Alu 0 312 1 2534 7 0 0 chr3 185115475 185115751 -32921407 - AluYa5 SINE Alu -4 307 32 2994 158 53 7 chr3 185116274 185116863 -32920295 + L1MB7 LINE L1 5553 6168 -16 1059 242 45 12 chr3 185117075 185117319 -32919839 - MIR SINE MIR 0 262 11 270 328 70 43 chr3 185117359 185117545 -32919613 + MIR3 SINE MIR 17 207 -1 410 274 86 41 chr3 185117827 185118024 -32919134 - L2 LINE L2 -2 3311 3106 290 275 12 0 chr3 185118173 185118253 -32918905 + MLT1J1 LTR MaLR 1 81 -365 342 185 24 4 chr3 185118383 185118507 -32918651 + MLT1C LTR MaLR 411 582 -8 1802 161 3 63 chr3 185119210 185119589 -32917569 - MLT1B LTR MaLR -7 383 28 683 220 129 22 chr3 185119637 185119869 -32917289 + MLT1J1 LTR MaLR 65 321 -125 180 0 0 0 chr3 185120829 185120849 -32916309 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 332 306 51 0 chr3 185120864 185120962 -32916196 - L2 LINE L2 -31 3241 3139 721 224 125 21 chr3 185122122 185122609 -32914549 + MLT1F1 LTR MaLR 1 567 0 21 36 0 0 chr3 185123643 185123671 -32913487 + AT_rich Low_complexity Low_complexity 1 28 0 356 58 0 19 chr3 185124637 185124689 -32912469 + (CA)n Simple_repeat Simple_repeat 2 52 0 226 308 248 0 chr3 185125250 185125383 -32911775 - MIR SINE MIR -50 212 47 24 0 0 0 chr3 185125789 185125813 -32911345 + AT_rich Low_complexity Low_complexity 1 24 0 21 89 0 0 chr3 185126052 185126108 -32911050 + AT_rich Low_complexity Low_complexity 1 56 0 321 287 146 36 chr3 185126236 185126511 -32910647 + L1ME4a LINE L1 5761 6065 -56 400 307 47 12 chr3 185126568 185126887 -32910271 + L1ME2 LINE L1 5269 5598 -564 531 288 31 19 chr3 185126899 185127156 -32910002 + L1ME2 LINE L1 5689 5948 -216 2221 109 23 3 chr3 185127484 185127788 -32909370 + AluSx SINE Alu 1 310 -2 2348 105 0 7 chr3 185128400 185128705 -32908453 + AluSq SINE Alu 1 303 -10 21 0 0 0 chr3 185129779 185129800 -32907358 + AT_rich Low_complexity Low_complexity 1 21 0 398 308 103 0 chr3 185130606 185130791 -32906367 - MIR SINE MIR -9 253 50 259 280 120 10 chr3 185130784 185130884 -32906274 + L2 LINE L2 3158 3268 -4 * 1843 157 40 27 chr3 185131507 185131877 -32905281 - THE1C LTR MaLR 0 375 1 224 264 277 0 chr3 185132104 185132259 -32904899 - MIR SINE MIR -4 258 61 244 326 21 75 chr3 185132855 185133042 -32904116 - MIR3 SINE MIR -6 202 26 306 282 171 35 chr3 185133156 185133326 -32903832 - MIR3 SINE MIR -11 197 5 5568 105 6 0 chr3 185133546 185134353 -32902805 + L1PA7 LINE L1 8 819 -5642 22961 86 10 6 chr3 185134356 185138608 -32898550 + L1PA7 LINE L1 2198 6466 -3 21 0 0 0 chr3 185140440 185140461 -32896697 + AT_rich Low_complexity Low_complexity 1 21 0 387 0 0 0 chr3 185142417 185142460 -32894698 + (CA)n Simple_repeat Simple_repeat 2 44 0 1021 233 31 35 chr3 185142636 185142894 -32894264 + MIR SINE MIR 4 260 -2 189 0 0 0 chr3 185143232 185143253 -32893905 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 956 83 0 0 chr3 185145847 185145980 -32891178 - L1PB1 LINE L1 0 6151 6019 189 0 0 0 chr3 185146450 185146471 -32890687 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 226 222 0 0 chr3 185147039 185147084 -32890074 + CT-rich Low_complexity Low_complexity 2 46 0 267 218 26 26 chr3 185147901 185147979 -32889179 + A-rich Low_complexity Low_complexity 5 82 0 325 239 0 0 chr3 185148692 185148759 -32888399 + MIR SINE MIR 81 147 -61 240 167 0 0 chr3 185149066 185149114 -32888044 + CT-rich Low_complexity Low_complexity 2 49 0 432 202 91 0 chr3 185149267 185149366 -32887792 - AluJ SINE Alu -5 307 200 988 176 0 25 chr3 185149366 185149525 -32887633 - AluJ SINE Alu -157 155 1 2446 60 0 0 chr3 185149904 185150204 -32886954 + AluY SINE Alu 1 300 -11 360 329 137 37 chr3 185150455 185150805 -32886353 + L3b LINE CR1 1111 1495 -88 198 409 8 38 chr3 185151044 185151176 -32885982 + L2 LINE L2 3106 3233 -39 396 242 88 11 chr3 185151325 185151416 -32885742 + L2 LINE L2 3203 3300 -13 201 74 0 0 chr3 185151416 185151443 -32885715 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 815 246 24 19 chr3 185152563 185152774 -32884384 - MIR SINE MIR 0 262 51 197 149 0 64 chr3 185152764 185152811 -32884347 - L2 LINE L2 -7 3306 3263 * 423 0 0 0 chr3 185153047 185153094 -32884064 + (CA)n Simple_repeat Simple_repeat 2 48 0 509 267 48 7 chr3 185155068 185155214 -32881944 + MIR3 SINE MIR 50 201 -7 226 343 29 9 chr3 185156211 185156316 -32880842 - MIR SINE MIR -30 232 126 180 152 0 0 chr3 185158435 185158468 -32878690 + (CA)n Simple_repeat Simple_repeat 2 34 0 236 238 16 56 chr3 185158471 185158597 -32878561 + (TA)n Simple_repeat Simple_repeat 1 121 0 699 165 0 0 chr3 185158695 185158810 -32878348 - FLAM_A SINE Alu -18 115 1 225 312 117 39 chr3 185159131 185159285 -32877873 - MER5A DNA MER1_type -23 166 1 2060 116 0 77 chr3 185159459 185159795 -32877363 + AluSx SINE Alu 3 312 0 733 211 80 6 chr3 185160003 185160178 -32876980 + MER5A DNA MER1_type 1 188 -1 183 42 0 0 chr3 185160499 185160523 -32876635 + (A)n Simple_repeat Simple_repeat 1 24 0 25 31 0 0 chr3 185160767 185160799 -32876359 + AT_rich Low_complexity Low_complexity 1 32 0 194 379 10 39 chr3 185164160 185164263 -32872895 + MIR3 SINE MIR 9 108 -100 2444 74 3 0 chr3 185164854 185165151 -32872007 + AluSc SINE Alu 1 298 -11 2089 136 0 0 chr3 185165598 185165892 -32871266 - AluSx SINE Alu -18 294 1 1137 145 36 59 chr3 185168075 185168296 -32868862 - MER20 DNA MER1_type -3 216 1 549 220 0 9 chr3 185168704 185168813 -32868345 + Tigger3(Golem) DNA MER2_type 1 108 -2921 * 3148 129 126 15 chr3 185168804 185169461 -32867697 + Tigger3(Golem) DNA MER2_type 2278 3007 -22 477 122 0 0 chr3 185169843 185169917 -32867241 + (TC)n Simple_repeat Simple_repeat 1 74 0 355 235 0 0 chr3 185169983 185170051 -32867107 - MIR3 SINE MIR -48 160 93 234 295 93 22 chr3 185170815 185170954 -32866204 - L3 LINE CR1 -223 1354 1206 2171 125 13 3 chr3 185171751 185172055 -32865103 + AluSx SINE Alu 1 307 -5 185 233 50 0 chr3 185172104 185172152 -32865006 - MIR SINE MIR -22 240 187 977 265 47 53 chr3 185172152 185172662 -32864496 - MLT1J LTR MaLR -2 509 3 185 233 50 0 chr3 185172662 185172673 -32864485 - MIR SINE MIR -75 187 178 21 57 0 0 chr3 185172695 185172730 -32864428 + AT_rich Low_complexity Low_complexity 1 35 0 238 343 40 0 chr3 185172784 185172883 -32864275 - MIR SINE MIR -154 108 6 22 0 0 0 chr3 185175753 185175775 -32861383 + AT_rich Low_complexity Low_complexity 1 22 0 202 194 0 0 chr3 185175961 185175997 -32861161 + (ATG)n Simple_repeat Simple_repeat 1 36 0 643 227 15 79 chr3 185175997 185176120 -32861038 - MIR SINE MIR -1 261 154 270 0 0 0 chr3 185176120 185176150 -32861008 + (TG)n Simple_repeat Simple_repeat 2 31 0 643 227 15 79 chr3 185176150 185176229 -32860929 - MIR SINE MIR -108 154 72 609 198 35 0 chr3 185176406 185176522 -32860636 + L2 LINE L2 3194 3313 0 274 263 218 23 chr3 185176615 185176748 -32860410 - MER5A DNA MER1_type -1 188 30 22 35 0 0 chr3 185177283 185177312 -32859846 + AT_rich Low_complexity Low_complexity 1 29 0 1180 173 0 56 chr3 185177526 185177757 -32859401 - MER20 DNA MER1_type 0 219 2 340 239 80 0 chr3 185179393 185179481 -32857677 - L2 LINE L2 -4 3268 3174 246 181 28 14 chr3 185179708 185179780 -32857378 + CT-rich Low_complexity Low_complexity 1 73 0 456 234 75 0 chr3 185180338 185180445 -32856713 - FLAM_A SINE Alu -17 116 2 486 262 223 10 chr3 185180501 185180707 -32856451 + MIR SINE MIR 1 250 -12 301 321 46 30 chr3 185180850 185180981 -32856177 + L2 LINE L2 3139 3271 -1 1966 135 27 7 chr3 185181965 185182261 -32854897 - AluSx SINE Alu -10 302 1 23 54 0 0 chr3 185182850 185182887 -32854271 + AT_rich Low_complexity Low_complexity 1 37 0 475 202 221 6 chr3 185182972 185183110 -32854048 - MER5A DNA MER1_type -13 176 4 248 347 82 14 chr3 185183724 185183871 -32853287 - MIR SINE MIR -55 207 51 2258 93 7 7 chr3 185183998 185184300 -32852858 + AluSc SINE Alu 1 302 -7 24 0 0 0 chr3 185185398 185185422 -32851736 + AT_rich Low_complexity Low_complexity 1 24 0 418 293 0 8 chr3 185186593 185186716 -32850442 + MIR3 SINE MIR 81 202 -6 647 266 44 35 chr3 185186801 185187004 -32850154 + MIR SINE MIR 47 251 -11 2182 113 0 0 chr3 185187096 185187406 -32849752 + AluSx SINE Alu 1 310 0 807 171 0 0 chr3 185187696 185187825 -32849333 - FLAM_C SINE Alu -2 141 13 270 0 0 0 chr3 185187990 185188020 -32849138 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2181 110 0 0 chr3 185188023 185188305 -32848853 - AluSx SINE Alu -30 282 1 1763 115 93 11 chr3 185188556 185188825 -32848333 - AluSq SINE Alu -20 293 3 468 255 39 51 chr3 185188825 185189080 -32848078 - L1MC4 LINE L1 -101 7941 7690 1963 178 43 9 chr3 185189254 185189699 -32847459 + L1 LINE L1 4944 5403 -743 195 195 0 0 chr3 185191107 185191148 -32846010 - L2 LINE L2 0 3313 3273 813 236 53 42 chr3 185191322 185191606 -32845552 + MLT1G LTR MaLR 2 288 -302 3159 112 0 0 chr3 185191727 185192200 -32844958 + L1P LINE L1 3373 3845 -2301 4553 40 7 0 chr3 185192203 185192945 -32844213 + L1P2 LINE L1 4800 5545 -610 7152 40 5 6 chr3 185193063 185194021 -32843137 + L1P LINE L1 3650 4606 -1540 189 0 0 0 chr3 185194454 185194475 -32842683 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 2312 92 0 10 chr3 185194779 185195083 -32842075 - AluSq SINE Alu -12 301 1 275 226 0 0 chr3 185195481 185195534 -32841624 + MIR SINE MIR 1 53 -209 21 0 0 0 chr3 185195568 185195589 -32841569 + AT_rich Low_complexity Low_complexity 1 21 0 265 167 0 0 chr3 185196236 185196278 -32840880 + 5S rRNA rRNA 1 42 -79 327 65 0 0 chr3 185196485 185196531 -32840627 + (CA)n Simple_repeat Simple_repeat 2 47 0 219 186 0 0 chr3 185197725 185197768 -32839390 + A-rich Low_complexity Low_complexity 1 43 0 210 157 0 59 chr3 185199502 185199553 -32837605 + T-rich Low_complexity Low_complexity 2 49 0 283 249 90 140 chr3 185201166 185201579 -32835579 - L2 LINE L2 -16 3256 2865 23 33 0 0 chr3 185203131 185203161 -32833997 + AT_rich Low_complexity Low_complexity 1 30 0 1143 194 5 54 chr3 185203161 185203383 -32833775 - AluJo SINE Alu -31 281 71 302 114 0 0 chr3 185203570 185203614 -32833544 - Alu SINE Alu -264 44 1 625 241 145 0 chr3 185203870 185204111 -32833047 + MER113 DNA MER1_type? 2 277 -244 2483 31 0 0 chr3 185204155 185204446 -32832712 - L1PA3 LINE L1 -4 6151 5861 21 0 0 0 chr3 185204879 185204900 -32832258 + AT_rich Low_complexity Low_complexity 1 21 0 192 292 31 15 chr3 185205104 185205169 -32831989 - MIR SINE MIR -62 146 81 * 255 272 70 44 chr3 185205158 185205272 -32831886 - MIR3 SINE MIR -9 199 83 264 30 0 0 chr3 185206927 185206960 -32830198 + (CA)n Simple_repeat Simple_repeat 1 33 0 779 241 110 0 chr3 185207796 185207987 -32829171 + MIR SINE MIR 13 224 -38 210 143 0 0 chr3 185207994 185208029 -32829129 + (TTA)n Simple_repeat Simple_repeat 2 36 0 755 328 153 5 chr3 185208369 185209003 -32828155 - L3 LINE CR1 -444 1133 406 836 254 145 41 chr3 185209649 185210090 -32827068 + MLT1F LTR MaLR 43 529 -13 198 283 33 0 chr3 185210704 185210764 -32826394 - L2 LINE L2 -219 3053 2992 326 303 12 14 chr3 185211553 185211691 -32825467 + MLT1I LTR MaLR 69 206 -203 232 314 16 90 chr3 185211711 185211899 -32825259 + MLT1J2 LTR MaLR 275 448 -2 385 325 156 36 chr3 185211938 185212323 -32824835 + MLT1K LTR MaLR 139 569 -19 605 251 134 52 chr3 185212518 185212749 -32824409 - MLT1I LTR MaLR 0 409 160 41 36 0 0 chr3 185212828 185212883 -32824275 + AT_rich Low_complexity Low_complexity 1 55 0 215 321 176 0 chr3 185213322 185213487 -32823671 - MIR SINE MIR -45 217 24 523 274 65 24 chr3 185214333 185214501 -32822657 - MIR SINE MIR -50 212 38 598 71 0 0 chr3 185215079 185215163 -32821995 + Alu SINE Alu 223 306 -4 2128 121 0 0 chr3 185216915 185217247 -32819911 - AluSx SINE Alu 0 332 1 407 200 180 0 chr3 185218568 185218668 -32818490 - MER5B DNA MER1_type -60 118 1 1733 26 0 0 chr3 185218714 185218908 -32818250 - L1PA6 LINE L1 -281 5873 5680 1790 55 63 0 chr3 185218908 185219005 -32818153 + L1PA5 LINE L1 5900 5989 -165 189 0 0 0 chr3 185219005 185219026 -32818132 + (AGGGGG)n Simple_repeat Simple_repeat 2 22 0 1790 55 63 0 chr3 185219026 185219164 -32817994 + L1PA5 LINE L1 5989 6152 -2 309 288 92 6 chr3 185219888 185220051 -32817107 + MIR SINE MIR 51 227 -35 403 222 11 0 chr3 185220077 185220167 -32816991 - MIR SINE MIR -112 150 60 293 292 75 8 chr3 185220487 185220607 -32816551 - MIR SINE MIR -97 165 38 704 140 0 0 chr3 185221872 185221979 -32815179 + AluJb SINE Alu 6 112 -200 1123 95 0 0 chr3 185221979 185222127 -32815031 + AluSp/q SINE Alu 164 311 -2 311 258 28 22 chr3 185223522 185223673 -32813485 + L1ME LINE L1 5723 5885 -236 2667 166 10 16 chr3 185223678 185224171 -32812987 - L1 LINE L1 -1976 4170 3681 1929 132 39 3 chr3 185224171 185224482 -32812676 + L1PB1 LINE L1 5830 6151 0 604 230 150 10 chr3 185226394 185226594 -32810564 - MIR SINE MIR -13 249 22 261 0 0 0 chr3 185227503 185227532 -32809626 + (CA)n Simple_repeat Simple_repeat 2 30 0 842 240 60 9 chr3 185227685 185227918 -32809240 + Charlie8 DNA MER1_type 31 275 -2142 348 288 151 0 chr3 185228537 185228676 -32808482 - MIR SINE MIR -7 255 96 243 146 0 0 chr3 185231761 185231802 -32805356 + (A)n Simple_repeat Simple_repeat 1 41 0 297 0 0 0 chr3 185232129 185232162 -32804996 + (T)n Simple_repeat Simple_repeat 1 33 0 26 0 0 0 chr3 185232997 185233023 -32804135 + AT_rich Low_complexity Low_complexity 1 26 0 205 268 28 0 chr3 185233960 185234031 -32803127 + C-rich Low_complexity Low_complexity 4 76 0 198 0 0 0 chr3 185235747 185235769 -32801389 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 777 153 17 0 chr3 185236143 185236319 -32800839 + CT-rich Low_complexity Low_complexity 1 179 0 21 36 0 0 chr3 185236486 185236514 -32800644 + GC_rich Low_complexity Low_complexity 1 28 0 221 234 0 0 chr3 185236828 185236875 -32800283 + (CTG)n Simple_repeat Simple_repeat 2 48 0 222 171 0 0 chr3 185238474 185238515 -32798643 + A-rich Low_complexity Low_complexity 1 41 0 200 108 0 27 chr3 185239136 185239173 -32797985 + (TTTTC)n Simple_repeat Simple_repeat 3 38 0 494 186 233 8 chr3 185242289 185242411 -32794747 - MER5A DNA MER1_type -1 188 38 342 238 30 10 chr3 185242411 185242512 -32794646 + MER5A DNA MER1_type 4 106 -83 608 304 31 0 chr3 185243169 185243363 -32793795 + MIR SINE MIR 51 250 -12 183 129 0 0 chr3 185243416 185243447 -32793711 + (TG)n Simple_repeat Simple_repeat 1 31 0 221 0 35 0 chr3 185243643 185243672 -32793486 + (GA)n Simple_repeat Simple_repeat 1 30 0 2180 117 3 0 chr3 185243703 185244024 -32793134 - AluSx SINE Alu 0 322 1 1782 140 65 7 chr3 185245382 185245660 -32791498 + AluJo SINE Alu 1 294 -18 1811 279 49 77 chr3 185246759 185247211 -32789947 - L1MEd LINE L1 -4862 1257 794 1967 153 7 0 chr3 185247211 185247512 -32789646 - AluSx SINE Alu -9 303 1 1811 279 49 77 chr3 185247512 185247583 -32789575 - L1MEd LINE L1 -5325 794 723 2183 98 10 20 chr3 185247583 185247889 -32789269 - AluSp SINE Alu -10 303 1 1811 279 49 77 chr3 185247889 185248407 -32788751 - L1MEd LINE L1 -5396 723 244 384 318 88 0 chr3 185248926 185249096 -32788062 - MIR SINE MIR -3 259 75 294 240 13 13 chr3 185249101 185249176 -32787982 + MER116 DNA Mariner 6 80 0 1816 42 0 0 chr3 185249306 185249520 -32787638 - L1PA3 LINE L1 0 6155 5942 304 311 131 0 chr3 185249585 185249707 -32787451 + L2 LINE L2 3134 3271 -1 1685 217 131 103 chr3 185249792 185250324 -32786834 + MLT1G LTR MaLR 2 587 -8 502 275 57 36 chr3 185251140 185251333 -32785825 + LTR67 LTR ERVL 353 549 -8 243 210 81 92 chr3 185251535 185251830 -32785328 + Charlie7 DNA MER1_type 2321 2612 0 2045 136 0 10 chr3 185251852 185252154 -32785004 + AluSg SINE Alu 1 299 -11 43960 30 21 1 chr3 185252175 185258205 -32778953 + L1PA2 LINE L1 2 6155 0 699 184 0 14 chr3 185258350 185258491 -32778667 + L1PA15 LINE L1 6027 6165 0 198 250 316 0 chr3 185258619 185258695 -32778463 - MIR SINE MIR -59 149 50 189 0 0 0 chr3 185260128 185260149 -32777009 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 550 311 7 7 chr3 185260606 185260754 -32776404 + MER5B DNA MER1_type 3 150 -28 * 1031 311 60 93 chr3 185260735 185261738 -32775420 + L2 LINE L2 883 1852 -1462 856 328 133 19 chr3 185261757 185262482 -32774676 + L2 LINE L2 2303 3131 -182 878 74 0 0 chr3 185262591 185262699 -32774459 + AluSq/x SINE Alu 1 108 -204 2179 109 0 0 chr3 185262722 185263030 -32774128 + AluSg SINE Alu 1 308 0 454 264 108 92 chr3 185264356 185264810 -32772348 - MLT1J LTR MaLR -50 461 1 212 268 18 18 chr3 185264913 185264969 -32772189 - L2 LINE L2 -218 3054 2999 421 290 104 27 chr3 185265045 185265342 -32771816 - MLT1K LTR MaLR -87 501 139 2054 104 45 7 chr3 185265778 185266067 -32771091 + AluSq SINE Alu 1 300 -13 644 284 117 43 chr3 185266844 185267238 -32769920 + MLT1L LTR MaLR 1 423 -192 255 31 0 0 chr3 185268007 185268039 -32769119 + (CA)n Simple_repeat Simple_repeat 1 32 0 1683 166 32 14 chr3 185268270 185268553 -32768605 - AluJb SINE Alu -19 293 6 1587 163 121 21 chr3 185268717 185269048 -32768110 - MLT1A1 LTR MaLR -1 364 1 236 354 26 71 chr3 185269398 185269706 -32767452 - L2 LINE L2 -338 2976 2683 1135 256 184 10 chr3 185269793 185270179 -32766979 + LTR16C LTR ERVL 31 483 -8 354 335 62 31 chr3 185270267 185270524 -32766634 - L2 LINE L2 -818 2496 2232 246 349 12 0 chr3 185270640 185270723 -32766435 + LTR67 LTR ERVL 108 191 -366 1235 187 0 20 chr3 185273178 185273424 -32763734 + L1PB4 LINE L1 5904 6144 -12 439 239 225 90 chr3 185273625 185273847 -32763311 - MIR SINE MIR -6 256 5 412 288 21 52 chr3 185274062 185274253 -32762905 - MLT1L LTR MaLR 0 615 431 501 348 128 6 chr3 185274455 185274791 -32762367 + LTR16A LTR ERVL 74 450 0 527 281 162 29 chr3 185275416 185275694 -32761464 + MLT1K LTR MaLR 210 524 -64 256 250 9 46 chr3 185276359 185276467 -32760691 - L1MC4a LINE L1 -1634 6174 6071 1427 220 87 14 chr3 185276497 185276859 -32760299 - MLT1E3 LTR MaLR 0 624 208 529 182 9 36 chr3 185276859 185276969 -32760189 - MLT1E3 LTR MaLR -547 107 1 279 217 32 160 chr3 185277047 185277328 -32759830 - L1MC4a LINE L1 -1882 5926 5682 231 268 0 0 chr3 185277357 185277413 -32759745 - L1MC4a LINE L1 -2216 5592 5537 278 217 100 33 chr3 185277431 185277551 -32759607 - L1MC4a LINE L1 -2379 5429 5302 12542 39 1 1 chr3 185277744 185280052 -32757106 + L1PA5 LINE L1 3839 6145 -9 26 0 0 0 chr3 185280052 185280078 -32757080 + AT_rich Low_complexity Low_complexity 1 26 0 1501 208 72 49 chr3 185280647 185280889 -32756269 - L1ME1 LINE L1 -18 6082 5824 2099 178 19 3 chr3 185280889 185281248 -32755910 + MLT1A1 LTR MaLR 1 365 0 1501 208 72 49 chr3 185281248 185281434 -32755724 - L1ME1 LINE L1 -276 5824 5644 605 223 174 25 chr3 185281448 185281690 -32755468 - L1ME1 LINE L1 -1686 4394 4117 1609 122 4 0 chr3 185281699 185281937 -32755221 - Tigger5 DNA MER2_type 0 2323 2085 290 236 0 0 chr3 185283284 185283339 -32753819 - Tigger5 DNA MER2_type -2261 62 8 5986 233 62 67 chr3 185283340 185283983 -32753175 - L1ME1 LINE L1 -1968 4112 3467 1681 158 43 16 chr3 185283983 185284287 -32752871 - AluJb SINE Alu 0 312 1 5986 233 62 67 chr3 185284287 185284603 -32752555 - L1ME1 LINE L1 -2613 3467 3151 1853 214 39 28 chr3 185284603 185285060 -32752098 - LTR40b LTR ERVL 0 462 1 5986 233 62 67 chr3 185285060 185285667 -32751491 - L1ME1 LINE L1 -2929 3151 2542 257 200 0 0 chr3 185285667 185285712 -32751446 + U6 snRNA snRNA 1 45 -62 5986 233 62 67 chr3 185285712 185286106 -32751052 - L1ME1 LINE L1 -3538 2542 2147 2623 61 0 0 chr3 185286106 185286417 -32750741 - AluY SINE Alu 0 311 1 5986 233 62 67 chr3 185286417 185286954 -32750204 - L1ME1 LINE L1 -3933 2147 1608 737 176 17 0 chr3 185286954 185287073 -32750085 - FLAM_A SINE Alu -11 122 2 5986 233 62 67 chr3 185287073 185288282 -32748876 - L1ME1 LINE L1 -4472 1608 405 5355 52 1 1 chr3 185288743 185289431 -32747727 - L1PA5 LINE L1 -2193 3953 3266 11376 51 6 0 chr3 185289431 185291633 -32745525 + L1PA5 LINE L1 3942 6151 -3 236 327 0 0 chr3 185291673 185291728 -32745430 - L2 LINE L2 -5 3308 3254 2354 113 6 6 chr3 185291974 185292319 -32744839 - L1PA10 LINE L1 -10 6158 5814 4564 55 2 0 chr3 185292319 185292877 -32744281 - L1PA6 LINE L1 -1 6153 5589 865 65 0 0 chr3 185292877 185292984 -32744174 - U6 snRNA snRNA 0 107 1 5334 105 5 20 chr3 185292988 185294336 -32742822 - L1PA10 LINE L1 -343 5825 4502 25 31 0 0 chr3 185294758 185294790 -32742368 + AT_rich Low_complexity Low_complexity 1 32 0 324 284 0 11 chr3 185294828 185294916 -32742242 + MIR SINE MIR 67 153 -109 1661 180 3 14 chr3 185295879 185296168 -32740990 + AluJo SINE Alu 1 286 -26 237 33 0 0 chr3 185296168 185296198 -32740960 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 6479 157 8 19 chr3 185296284 185297596 -32739562 + L1MC1 LINE L1 5033 6327 -6 15528 157 29 12 chr3 185297743 185300749 -32736409 - L1MA3 LINE L1 0 7724 4770 213 39 0 0 chr3 185300749 185300775 -32736383 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1568 184 7 21 chr3 185300776 185301059 -32736099 - AluJo SINE Alu -33 279 1 15528 157 29 12 chr3 185301059 185302949 -32734209 - L1MA3 LINE L1 -2953 4771 2748 1666 158 47 32 chr3 185302964 185303242 -32733916 - AluJb SINE Alu -24 288 7 3215 80 2 0 chr3 185303246 185303707 -32733451 - L1MA3 LINE L1 -4796 2769 2308 1518 232 20 3 chr3 185303705 185304002 -32733156 + L1M1 LINE L1 1376 1677 -5888 * 1616 109 4 0 chr3 185304001 185304248 -32732910 + L1M1 LINE L1 1992 2239 -5326 9445 47 0 12 chr3 185304348 185305556 -32731602 - L1P LINE L1 -1690 4456 3264 6622 52 0 0 chr3 185305554 185306377 -32730781 + L1P LINE L1 3942 4764 -1382 * 929 126 0 0 chr3 185306430 185306581 -32730577 - L1 LINE L1 -1426 6139 5989 685 133 0 0 chr3 185306581 185306686 -32730472 - AluSc SINE Alu -204 105 1 8083 86 6 2 chr3 185306699 185307848 -32729310 - L1 LINE L1 -4420 3145 1992 1518 232 20 3 chr3 185307847 185308144 -32729014 - L1 LINE L1 -5888 1677 1376 * 3215 80 2 0 chr3 185308142 185308603 -32728555 + L1P LINE L1 2308 2769 -4796 1666 158 47 32 chr3 185308607 185308885 -32728273 + AluJb SINE Alu 7 288 -24 14615 157 29 13 chr3 185308900 185310790 -32726368 + L1MA3 LINE L1 2748 4606 -3118 1601 180 7 21 chr3 185310790 185311073 -32726085 + AluJo SINE Alu 1 279 -33 213 39 0 0 chr3 185311074 185311100 -32726058 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 14615 157 29 13 chr3 185311100 185314106 -32723052 + L1MA3 LINE L1 4605 7724 0 6107 157 8 19 chr3 185314253 185315565 -32721593 - L1MC1 LINE L1 -6 6327 5033 237 33 0 0 chr3 185315651 185315681 -32721477 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 1676 180 3 14 chr3 185315681 185315970 -32721188 - AluJo SINE Alu -26 286 1 319 284 0 11 chr3 185316933 185317021 -32720137 - MIR SINE MIR -109 153 67 25 31 0 0 chr3 185317059 185317091 -32720067 + AT_rich Low_complexity Low_complexity 1 32 0 5122 135 3 28 chr3 185317513 185318438 -32718720 + L1P LINE L1 4502 5403 -743 7173 45 7 0 chr3 185318446 185319625 -32717533 + L1PA6 LINE L1 4966 6150 -4 5090 127 42 10 chr3 185319639 185321406 -32715752 + L1MA1 LINE L1 4257 6081 -221 1713 89 20 0 chr3 185321432 185321679 -32715479 + L1MA1 LINE L1 6047 6298 -4 24 0 0 0 chr3 185321691 185321715 -32715443 + AT_rich Low_complexity Low_complexity 1 24 0 1622 164 51 20 chr3 185321777 185322069 -32715089 - AluJb SINE Alu -11 301 1 270 0 0 0 chr3 185322216 185322246 -32714912 + (A)n Simple_repeat Simple_repeat 1 30 0 216 225 200 25 chr3 185322334 185322414 -32714744 + MIR SINE MIR 12 105 -157 1992 95 0 0 chr3 185323014 185323266 -32713892 + AluSx SINE Alu 45 296 -16 52 0 0 0 chr3 185323444 185323496 -32713662 + AT_rich Low_complexity Low_complexity 1 52 0 1570 128 133 0 chr3 185324018 185324267 -32712891 + AluSx SINE Alu 1 282 -30 207 0 0 0 chr3 185324289 185324312 -32712846 + (TA)n Simple_repeat Simple_repeat 2 24 0 2137 87 10 13 chr3 185324558 185324869 -32712289 + AluY SINE Alu 1 310 -1 2269 101 7 0 chr3 185326206 185326503 -32710655 - AluSx SINE Alu -13 299 1 21 0 0 0 chr3 185326503 185326524 -32710634 + AT_rich Low_complexity Low_complexity 1 21 0 2201 139 0 0 chr3 185326622 185326931 -32710227 + AluSx SINE Alu 3 311 -1 2484 14 7 7 chr3 185328752 185329074 -32708084 - AluYb8 SINE Alu 0 322 1 226 374 58 14 chr3 185329844 185329983 -32707175 - L2 LINE L2 0 3272 3128 225 331 179 19 chr3 185330737 185331045 -32706113 - L2 LINE L2 -575 2739 2383 660 225 7 0 chr3 185331076 185331227 -32705931 - L1MD2 LINE L1 -13 6346 6195 2331 208 28 11 chr3 185331243 185331772 -32705386 - L1MD2 LINE L1 -238 6121 5584 259 323 42 10 chr3 185331837 185331933 -32705225 + MIR SINE MIR 11 109 -153 252 198 45 171 chr3 185332893 185332980 -32704178 - MLT1L LTR MaLR 0 615 519 1599 159 39 18 chr3 185332980 185333263 -32703895 + AluJo SINE Alu 11 299 -13 1904 164 0 3 chr3 185333269 185333567 -32703591 + AluSx SINE Alu 1 297 -15 252 198 45 171 chr3 185333567 185333694 -32703464 - MLT1L LTR MaLR -101 514 422 2050 116 22 0 chr3 185333847 185334184 -32702974 - AluSx SINE Alu 0 343 1 495 290 21 36 chr3 185334359 185334552 -32702606 - MIR SINE MIR -53 209 20 2170 103 0 0 chr3 185334656 185334981 -32702177 - AluSx SINE Alu 0 325 1 440 295 236 19 chr3 185335369 185335789 -32701369 + L2 LINE L2 1381 1891 -1423 276 290 40 68 chr3 185335884 185336060 -32701098 + L2 LINE L2 3090 3260 -12 1211 116 64 0 chr3 185336818 185336991 -32700167 - AluSp SINE Alu 0 313 130 1129 75 0 0 chr3 185337031 185337164 -32699994 - AluSq/x SINE Alu -180 133 1 2121 120 7 13 chr3 185337667 185337967 -32699191 - AluSx SINE Alu -14 298 1 304 297 76 56 chr3 185338385 185338634 -32698524 - MLT1K LTR MaLR 0 588 335 480 280 77 28 chr3 185339304 185339668 -32697490 + L1ME4a LINE L1 5612 5993 -128 536 265 273 14 chr3 185339809 185340175 -32696983 - L2 LINE L2 -2 3311 2851 2538 70 3 3 chr3 185340177 185340519 -32696639 - THE1A LTR MaLR 0 355 14 559 304 70 39 chr3 185340519 185340745 -32696413 - L2 LINE L2 -482 2832 2596 2329 105 7 0 chr3 185340745 185341051 -32696107 + AluSx SINE Alu 1 308 -4 559 304 70 39 chr3 185341051 185341081 -32696077 - L2 LINE L2 -718 2596 2568 602 161 48 40 chr3 185341081 185341205 -32695953 + AluJo SINE Alu 43 167 -145 228 86 0 0 chr3 185341306 185341341 -32695817 - Alu SINE Alu -97 78 44 541 110 12 0 chr3 185341341 185341423 -32695735 + AluJ/FRAM SINE Alu 214 296 -16 21 0 0 0 chr3 185341884 185341905 -32695253 + AT_rich Low_complexity Low_complexity 1 21 0 364 299 147 25 chr3 185341943 185342100 -32695058 + MIR SINE MIR 37 212 -50 187 284 142 30 chr3 185342998 185343132 -32694026 - MIR SINE MIR -54 208 60 22 0 0 0 chr3 185343463 185343485 -32693673 + AT_rich Low_complexity Low_complexity 1 22 0 310 218 94 7 chr3 185343753 185343881 -32693277 - MER77 LTR ERV1 -7 598 503 353 263 57 70 chr3 185344063 185344390 -32692768 - MER77 LTR ERV1 -253 352 24 237 235 0 24 chr3 185344421 185344506 -32692652 + Charlie8 DNA MER1_type 74 156 -2261 2555 233 62 5 chr3 185345273 185345891 -32691267 - MER82 DNA MER2_type 0 653 1 323 273 0 83 chr3 185346081 185346213 -32690945 + MIR SINE MIR 16 136 -72 1740 111 68 14 chr3 185346702 185346982 -32690176 + AluSx SINE Alu 7 301 -11 727 78 129 0 chr3 185347587 185347703 -32689455 - MER85 DNA T2_type -4 135 5 2193 84 0 17 chr3 185349253 185349551 -32687607 - AluSx SINE Alu -19 293 1 186 167 0 0 chr3 185349690 185349726 -32687432 + CT-rich Low_complexity Low_complexity 1 36 0 199 237 132 53 chr3 185349775 185349851 -32687307 + L2 LINE L2 3176 3257 -15 765 154 88 7 chr3 185350274 185350443 -32686715 + FRAM SINE Alu 5 184 0 2529 40 0 3 chr3 185352053 185352353 -32684805 - AluY SINE Alu -12 299 1 394 161 32 0 chr3 185353611 185353766 -32683392 + (TA)n Simple_repeat Simple_repeat 2 161 0 509 173 4 27 chr3 185353789 185354347 -32682811 + (TA)n Simple_repeat Simple_repeat 1 544 0 375 144 11 39 chr3 185354380 185354560 -32682598 + (TA)n Simple_repeat Simple_repeat 1 175 0 23 33 0 0 chr3 185354564 185354594 -32682564 + AT_rich Low_complexity Low_complexity 1 30 0 5905 40 9 5 chr3 185354825 185355828 -32681330 - L1PA4 LINE L1 -119 6036 5032 435 178 10 23 chr3 185355953 185356822 -32680336 + (TA)n Simple_repeat Simple_repeat 1 857 0 671 14 0 0 chr3 185357497 185357571 -32679587 + tRNA-Val-GTT tRNA tRNA 1 74 -2 189 0 0 0 chr3 185357584 185357605 -32679553 + (T)n Simple_repeat Simple_repeat 1 21 0 204 81 0 54 chr3 185357634 185357671 -32679487 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1468 113 19 5 chr3 185360109 185360322 -32676836 - AluSg/x SINE Alu -11 299 84 343 188 75 12 chr3 185360763 185360843 -32676315 + MIR SINE MIR 80 164 -98 302 268 39 31 chr3 185360951 185361078 -32676080 - L1ME4a LINE L1 -56 6065 5938 532 230 144 32 chr3 185361617 185361804 -32675354 + MIR SINE MIR 29 236 -26 2159 89 62 0 chr3 185361962 185362253 -32674905 - AluSx SINE Alu -3 309 1 198 0 0 0 chr3 185362748 185362770 -32674388 + (TG)n Simple_repeat Simple_repeat 2 23 0 260 293 30 30 chr3 185362815 185362914 -32674244 - MIR SINE MIR -55 153 55 351 222 158 88 chr3 185363151 185363224 -32673934 + MER5A DNA MER1_type 4 70 -119 1576 167 67 0 chr3 185363224 185363493 -32673665 + AluJo SINE Alu 11 297 -15 351 222 158 88 chr3 185363493 185363590 -32673568 + MER5A DNA MER1_type 70 186 -3 2392 73 0 3 chr3 185365324 185365625 -32671533 - AluY SINE Alu -11 300 1 273 306 0 24 chr3 185366137 185366222 -32670936 - L2 LINE L2 -400 2913 2831 3072 226 218 34 chr3 185366261 185367497 -32669661 - L2 LINE L2 -611 2703 1240 276 220 77 88 chr3 185369512 185369603 -32667555 + L2 LINE L2 3168 3257 -15 186 43 0 0 chr3 185369990 185370013 -32667145 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 24 0 0 0 chr3 185370174 185370198 -32666960 + AT_rich Low_complexity Low_complexity 1 24 0 197 32 0 32 chr3 185370726 185370757 -32666401 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 255 250 186 29 chr3 185374631 185374771 -32662387 + MER5B DNA MER1_type 2 163 -15 1978 116 30 0 chr3 185374778 185375046 -32662112 - AluSx SINE Alu -36 276 1 1144 75 0 12 chr3 185375164 185375324 -32661834 - L1PA5 LINE L1 0 6154 5997 229 258 0 41 chr3 185375459 185375556 -32661602 + (CGGGG)n Simple_repeat Simple_repeat 2 94 0 302 180 16 33 chr3 185375818 185375879 -32661279 - Tigger5 DNA MER2_type -2244 79 20 181 315 217 28 chr3 185376960 185377535 -32659623 - L2 LINE L2 -855 2459 1776 1107 164 30 14 chr3 185378435 185378673 -32658485 + L1ME3A LINE L1 5796 6031 -147 2352 66 0 11 chr3 185379953 185380239 -32656919 - AluSc SINE Alu -15 294 12 393 303 183 19 chr3 185383277 185383485 -32653673 + MIR SINE MIR 6 247 -15 195 299 71 87 chr3 185383798 185383925 -32653233 + MER5A DNA MER1_type 51 175 -14 * 359 287 20 0 chr3 185383830 185383931 -32653227 - MER5B DNA MER1_type -67 111 9 216 326 47 47 chr3 185384427 185384556 -32652602 + L2 LINE L2 3185 3313 0 2134 125 0 0 chr3 185384908 185385203 -32651955 + AluSx SINE Alu 1 295 -17 2301 84 0 0 chr3 185385205 185385550 -32651608 + AluY SINE Alu 1 345 0 1047 96 19 6 chr3 185385550 185385706 -32651452 + L1MA3 LINE L1 6148 6305 0 2051 134 0 7 chr3 185386477 185386782 -32650376 - AluSx SINE Alu -9 303 1 1432 150 12 0 chr3 185386782 185387022 -32650136 - L1MB1 LINE L1 -100 6089 5847 1098 143 13 46 chr3 185387022 185387257 -32649901 + L1MA10 LINE L1 6104 6332 -2 2440 76 23 0 chr3 185387268 185387572 -32649586 + AluSx SINE Alu 1 311 -1 1119 256 88 36 chr3 185387749 185388136 -32649022 - LTR16C LTR ERVL 0 491 85 1563 156 17 7 chr3 185388869 185389158 -32648000 - L1MC1 LINE L1 -13 6320 6029 21 36 0 0 chr3 185390926 185390954 -32646204 + AT_rich Low_complexity Low_complexity 1 28 0 459 269 25 0 chr3 185392254 185392373 -32644785 + MIR SINE MIR 13 134 -128 245 29 29 0 chr3 185392534 185392568 -32644590 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1735 163 3 23 chr3 185392681 185392988 -32644170 - AluJb SINE Alu -11 301 1 2390 79 0 22 chr3 185393161 185393479 -32643679 - AluY SINE Alu 0 311 1 21 36 0 0 chr3 185396417 185396445 -32640713 + AT_rich Low_complexity Low_complexity 1 28 0 2301 109 0 0 chr3 185397630 185397942 -32639216 - AluSx SINE Alu 0 312 1 4639 156 10 44 chr3 185397945 185398838 -32638320 - L1MB2 LINE L1 -1 6170 5308 577 175 0 26 chr3 185400243 185400357 -32636801 - L1MB2 LINE L1 -830 5316 5206 1038 192 53 0 chr3 185400366 185400574 -32636584 + AluJb SINE Alu 87 305 -7 1370 276 29 44 chr3 185400867 185401112 -32636046 - L1MEc LINE L1 -4602 1794 1547 1562 202 0 36 chr3 185401112 185401419 -32635739 + AluJb SINE Alu 14 309 -3 1370 276 29 44 chr3 185401419 185401790 -32635368 - L1MEc LINE L1 -4849 1547 1187 2223 118 3 0 chr3 185401803 185402109 -32635049 + AluSp SINE Alu 1 307 -6 818 281 82 0 chr3 185402283 185402514 -32634644 + MIR SINE MIR 12 261 -1 289 365 10 10 chr3 185402545 185402649 -32634509 + MER5A DNA MER1_type 86 189 0 541 292 128 9 chr3 185403075 185403301 -32633857 - MIR SINE MIR -7 255 3 207 297 103 36 chr3 185403508 185403673 -32633485 + L2 LINE L2 2886 3061 -211 233 224 104 0 chr3 185403874 185403941 -32633217 - L2 LINE L2 0 3313 3240 1907 128 0 0 chr3 185404157 185404430 -32632728 + AluY SINE Alu 39 311 0 616 319 60 10 chr3 185404436 185404734 -32632424 + MER20B DNA MER1_type 47 359 -424 1753 142 39 4 chr3 185404752 185405033 -32632125 - AluJb SINE Alu -16 296 6 2232 83 10 10 chr3 185405611 185405900 -32631258 - AluY SINE Alu -22 289 1 1081 151 6 0 chr3 185406087 185406266 -32630892 - L1MB5 LINE L1 0 6174 5995 4138 169 77 22 chr3 185406385 185406906 -32630252 + L1MB7 LINE L1 4063 4554 -1592 2333 103 3 0 chr3 185406906 185407208 -32629950 + AluSp SINE Alu 1 303 -10 4138 169 77 22 chr3 185407208 185407649 -32629509 + L1MB7 LINE L1 4554 5078 -1068 1533 135 60 60 chr3 185407654 185407988 -32629170 + L1MB7 LINE L1 5850 6183 -1 198 0 0 0 chr3 185409026 185409048 -32628110 + (A)n Simple_repeat Simple_repeat 1 22 0 185 271 186 0 chr3 185409274 185409333 -32627825 - MIR SINE MIR -114 148 79 2380 77 0 3 chr3 185409340 185409640 -32627518 + AluSx SINE Alu 6 304 -8 263 336 147 0 chr3 185410366 185410482 -32626676 - MIR SINE MIR -128 134 2 195 42 0 0 chr3 185410500 185410524 -32626634 + (T)n Simple_repeat Simple_repeat 1 24 0 508 264 92 22 chr3 185411215 185411260 -32625898 - L1ME4a LINE L1 -5 6116 6076 2037 106 63 0 chr3 185411260 185411544 -32625614 - AluSx SINE Alu -10 302 1 508 264 92 22 chr3 185411544 185411812 -32625346 - L1ME4a LINE L1 -45 6076 5781 2200 91 7 26 chr3 185412088 185412397 -32624761 + AluSx SINE Alu 1 303 -9 2230 139 21 0 chr3 185414413 185414751 -32622407 - LOR1a LTR ERV1 0 497 153 3216 138 5 60 chr3 185414751 185414797 -32622361 - LTR1 LTR ERV1 0 785 738 2686 88 71 0 chr3 185414797 185415149 -32622009 + MER51B LTR ERV1 1 377 0 3216 138 5 60 chr3 185415149 185415717 -32621441 - LTR1 LTR ERV1 -47 738 205 440 130 39 0 chr3 185415706 185415783 -32621375 - LTR1 LTR ERV1 -523 262 183 * 2052 120 3 0 chr3 185415784 185416089 -32621069 - AluSx SINE Alu 0 306 1 14401 172 21 16 chr3 185416089 185417965 -32619193 - L1 LINE L1 -1141 6424 4525 2224 136 7 0 chr3 185417965 185418275 -32618883 - AluSx SINE Alu 0 312 1 14401 172 21 16 chr3 185418275 185419197 -32617961 - L1 LINE L1 -3040 4525 3610 3433 162 9 2 chr3 185419195 185419762 -32617396 - L1 LINE L1 -6979 586 16 * 1112 213 55 8 chr3 185419774 185420009 -32617149 - MER34 LTR ERV1 -294 248 3 342 287 0 0 chr3 185420974 185421061 -32616097 + MIR SINE MIR 122 208 -54 387 0 0 0 chr3 185421554 185421597 -32615561 + (TG)n Simple_repeat Simple_repeat 2 44 0 605 195 56 72 chr3 185421645 185421840 -32615318 - L1M4 LINE L1 -1404 4742 4551 939 28 0 0 chr3 185421840 185421947 -32615211 - AluY SINE Alu -11 300 194 268 219 55 14 chr3 185421947 185422020 -32615138 - L1M4 LINE L1 -1595 4551 4476 237 294 118 17 chr3 185422188 185422307 -32614851 - L1MCc LINE L1 -6027 396 266 237 33 0 0 chr3 185422453 185422483 -32614675 + (TTTTTG)n Simple_repeat Simple_repeat 3 32 0 295 267 7 74 chr3 185422486 185422621 -32614537 - L1MCc LINE L1 -6273 150 25 2169 83 10 28 chr3 185422657 185422970 -32614188 + AluSq SINE Alu 1 308 0 316 217 48 0 chr3 185424428 185424511 -32612647 - MIR SINE MIR 0 262 176 6495 213 66 38 chr3 185424947 185426145 -32611013 - L1MC/D LINE L1 -743 5403 4149 2355 104 0 0 chr3 185426145 185426452 -32610706 - AluSc SINE Alu -2 307 1 6495 213 66 38 chr3 185426452 185427384 -32609774 - L1MC/D LINE L1 -1997 4149 3244 1893 218 53 49 chr3 185427392 185427480 -32609678 - MLT1E2 LTR MaLR -1 625 539 693 193 44 0 chr3 185427480 185427615 -32609543 - L1PB4 LINE L1 -12 6144 6004 1893 218 53 49 chr3 185427615 185428039 -32609119 - MLT1E2 LTR MaLR -87 539 111 33 43 0 0 chr3 185428223 185428270 -32608888 + AT_rich Low_complexity Low_complexity 1 47 0 2281 105 3 6 chr3 185428452 185428765 -32608393 + AluSx SINE Alu 1 312 0 33 43 0 0 chr3 185428940 185428987 -32608171 + AT_rich Low_complexity Low_complexity 1 47 0 23 0 0 0 chr3 185429013 185429036 -32608122 + AT_rich Low_complexity Low_complexity 1 23 0 2279 107 0 0 chr3 185429039 185429338 -32607820 - AluSg SINE Alu -11 299 1 420 219 60 33 chr3 185429342 185429493 -32607665 + L1MC5 LINE L1 7763 7917 -44 560 296 135 27 chr3 185429712 185430083 -32607075 + L3 LINE CR1 1158 1568 -9 491 103 41 0 chr3 185431253 185431350 -32605808 + (TA)n Simple_repeat Simple_repeat 2 102 0 2389 214 145 7 chr3 185432247 185432854 -32604304 + L1MD2 LINE L1 5659 6349 -10 2075 141 0 7 chr3 185432863 185433168 -32603990 + AluSx SINE Alu 1 303 -9 630 222 19 31 chr3 185433175 185433337 -32603821 - L1MC5 LINE L1 -78 7883 7724 542 208 92 29 chr3 185433798 185433971 -32603187 - L2 LINE L2 -9 3304 3121 338 248 83 16 chr3 185433992 185434113 -32603045 + L2 LINE L2 1472 1600 -1714 1362 245 45 46 chr3 185434129 185434408 -32602750 + L2 LINE L2 2743 3021 -292 1667 200 38 30 chr3 185434408 185434596 -32602562 + MLT1A2 LTR MaLR 1 186 -188 222 37 0 0 chr3 185434596 185434623 -32602535 + (TC)n Simple_repeat Simple_repeat 2 28 0 1667 200 38 30 chr3 185434623 185434804 -32602354 + MLT1A2 LTR MaLR 186 373 -1 1362 245 45 46 chr3 185434804 185435105 -32602053 + L2 LINE L2 3021 3312 -1 710 277 67 8 chr3 185435123 185435376 -32601782 - L2 LINE L2 -232 3081 2814 268 185 74 0 chr3 185435387 185435441 -32601717 + MER20B DNA MER1_type 15 72 -711 786 260 140 7 chr3 185435452 185435707 -32601451 + Charlie2 DNA MER1_type 2 300 -2562 279 0 0 0 chr3 185435707 185435738 -32601420 + (CA)n Simple_repeat Simple_repeat 2 32 0 786 260 140 7 chr3 185435738 185435767 -32601391 + Charlie2 DNA MER1_type 300 324 -2538 2798 212 123 32 chr3 185435768 185436675 -32600483 + Charlie2 DNA MER1_type 1857 2846 -16 801 171 60 72 chr3 185436683 185436740 -32600418 + MER20B DNA MER1_type 536 592 -191 2236 81 32 0 chr3 185436740 185437023 -32600135 - AluSx SINE Alu -20 292 1 801 171 60 72 chr3 185437023 185437216 -32599942 + MER20B DNA MER1_type 592 783 0 302 319 31 25 chr3 185437286 185437446 -32599712 - L2 LINE L2 -616 2698 2538 1219 134 0 0 chr3 185438448 185438619 -32598539 - AluSg/x SINE Alu -7 305 135 2311 98 0 0 chr3 185438619 185438915 -32598243 - AluSg SINE Alu -14 296 1 563 160 11 0 chr3 185439340 185439434 -32597724 - AluSg/x SINE Alu -11 298 204 * 709 168 0 0 chr3 185439426 185439533 -32597625 + AluSg/x SINE Alu 195 301 -11 2149 103 3 0 chr3 185440043 185440349 -32596809 - AluSp SINE Alu 0 309 3 496 221 196 13 chr3 185440351 185440703 -32596455 - MER113 DNA MER1_type? -39 482 2 2119 101 7 10 chr3 185441324 185441622 -32595536 - AluSc SINE Alu -12 297 1 1122 184 0 15 chr3 185442336 185442532 -32594626 + AluJb SINE Alu 85 277 -35 318 139 0 0 chr3 185442532 185442575 -32594583 - Alu SINE Alu -259 43 1 * 1379 211 3 28 chr3 185442575 185442855 -32594303 - MER68 LTR ERV1 -286 276 4 24 32 0 0 chr3 185443042 185443073 -32594085 + AT_rich Low_complexity Low_complexity 1 31 0 859 227 58 40 chr3 185443435 185443660 -32593498 + MIR SINE MIR 32 260 -2 1663 142 32 0 chr3 185444046 185444299 -32592859 + AluSx SINE Alu 50 310 -2 656 278 29 41 chr3 185444854 185444982 -32592176 + MIR SINE MIR 20 145 -117 2570 48 0 19 chr3 185444982 185445298 -32591860 + AluY SINE Alu 1 310 -1 656 278 29 41 chr3 185445298 185445414 -32591744 + MIR SINE MIR 145 261 -1 238 301 170 7 chr3 185445616 185445769 -32591389 + L2 LINE L2 3028 3205 -108 268 202 45 67 chr3 185446733 185446822 -32590336 - L2 LINE L2 0 3272 3186 505 232 52 32 chr3 185446847 185447096 -32590062 - L2 LINE L2 -351 2962 2525 212 300 20 0 chr3 185447489 185447539 -32589619 - L2 LINE L2 -8 3264 3214 762 189 24 0 chr3 185447879 185448006 -32589152 + FLAM_A SINE Alu 1 130 -12 802 144 8 0 chr3 185448009 185448127 -32589031 + AluSg1 SINE Alu 1 119 -190 378 248 35 50 chr3 185448707 185448783 -32588375 - L1ME4a LINE L1 0 6121 6045 1847 94 86 11 chr3 185448783 185449050 -32588108 - AluSx SINE Alu -25 287 1 378 248 35 50 chr3 185449050 185449171 -32587987 - L1ME4a LINE L1 -76 6045 5927 217 250 0 71 chr3 185449551 185449607 -32587551 + L2 LINE L2 3214 3265 -7 210 37 0 0 chr3 185450228 185450255 -32586903 + (TTA)n Simple_repeat Simple_repeat 1 27 0 583 211 18 0 chr3 185450285 185450399 -32586759 - FLAM_A SINE Alu -17 116 1 499 212 98 27 chr3 185451789 185451973 -32585185 + Charlie7 DNA MER1_type 2416 2612 0 2158 223 67 95 chr3 185452045 185452831 -32584327 + L1MC5 LINE L1 6859 7608 -353 1972 91 4 8 chr3 185452831 185453095 -32584063 - AluSx SINE Alu -27 285 23 2158 223 67 95 chr3 185453095 185453397 -32583761 + L1MC5 LINE L1 7608 7917 -44 237 33 0 0 chr3 185453876 185453906 -32583252 + (TTG)n Simple_repeat Simple_repeat 2 31 0 2354 89 0 3 chr3 185453914 185454217 -32582941 - AluSx SINE Alu -10 302 1 2384 92 0 13 chr3 185454250 185454567 -32582591 - AluSq SINE Alu 0 313 1 2153 110 0 3 chr3 185454722 185455047 -32582111 - AluSc SINE Alu 0 324 1 701 187 65 0 chr3 185455159 185455298 -32581860 - MLT1C LTR MaLR 0 467 320 439 222 0 28 chr3 185455318 185455426 -32581732 - MLT1C LTR MaLR -362 105 1 216 0 0 0 chr3 185456018 185456042 -32581116 + (T)n Simple_repeat Simple_repeat 1 24 0 313 295 0 9 chr3 185456622 185456727 -32580431 - MIR SINE MIR -130 132 29 2302 104 0 0 chr3 185456731 185457039 -32580119 - AluSg SINE Alu -2 308 1 370 240 69 106 chr3 185457196 185457490 -32579668 + L1ME3 LINE L1 5682 5964 -157 235 133 83 17 chr3 185457473 185457533 -32579625 - L1MC4 LINE L1 -1339 6703 6640 * 635 222 24 0 chr3 185457629 185457755 -32579403 + FLAM_C SINE Alu 2 130 -3 28 56 0 28 chr3 185457856 185457895 -32579263 + AT_rich Low_complexity Low_complexity 1 40 -29 2175 108 0 14 chr3 185457895 185458206 -32578952 - AluSx SINE Alu 0 307 1 28 56 0 28 chr3 185458206 185458236 -32578922 + AT_rich Low_complexity Low_complexity 40 69 0 2343 94 0 0 chr3 185458402 185458699 -32578459 - AluSg SINE Alu -13 297 1 2245 125 0 0 chr3 185459503 185459816 -32577342 + AluSq SINE Alu 1 313 0 2717 33 0 0 chr3 185460720 185461024 -32576134 + AluY SINE Alu 2 305 -6 270 322 149 46 chr3 185461025 185461286 -32575872 + L3 LINE CR1 1289 1576 -1 2225 103 0 3 chr3 185461631 185461923 -32575235 - AluSx SINE Alu -17 295 5 406 91 45 0 chr3 185462413 185462479 -32574679 - AluS SINE Alu -244 69 2 2170 88 0 85 chr3 185462565 185462905 -32574253 + AluY SINE Alu 1 311 0 279 0 0 0 chr3 185463757 185463788 -32573370 + (T)n Simple_repeat Simple_repeat 1 31 0 2196 82 50 0 chr3 185464365 185464644 -32572514 + AluSq SINE Alu 1 293 -20 2184 117 0 3 chr3 185465632 185465932 -32571226 + AluSx SINE Alu 1 299 -13 2306 99 3 0 chr3 185466310 185466613 -32570545 - AluSx SINE Alu -8 304 1 2408 90 0 0 chr3 185467522 185467822 -32569336 + AluSg SINE Alu 1 300 -10 204 40 0 0 chr3 185467876 185467901 -32569257 + (A)n Simple_repeat Simple_repeat 1 25 0 715 227 32 82 chr3 185467974 185468098 -32569060 - MER20B DNA MER1_type 0 783 654 1541 174 12 49 chr3 185468098 185468426 -32568732 + L1MC1 LINE L1 6018 6333 0 1958 123 0 0 chr3 185468434 185468703 -32568455 + AluSx SINE Alu 1 269 -43 715 227 32 82 chr3 185468703 185468851 -32568307 - MER20B DNA MER1_type -136 647 516 205 178 19 65 chr3 185468853 185468960 -32568198 + (TTATA)n Simple_repeat Simple_repeat 4 105 0 216 0 0 0 chr3 185468969 185468993 -32568165 + (TA)n Simple_repeat Simple_repeat 2 25 0 1831 167 10 3 chr3 185468995 185469289 -32567869 - AluJb SINE Alu -16 296 1 2103 112 0 17 chr3 185469659 185469970 -32567188 - AluSx SINE Alu 0 306 1 2568 108 57 42 chr3 185470365 185470601 -32566557 + Tigger2a DNA MER2_type 5 251 -2457 2220 96 0 10 chr3 185470601 185470903 -32566255 + AluSx SINE Alu 1 299 -13 2568 108 57 42 chr3 185470903 185471090 -32566068 + Tigger2a DNA MER2_type 251 434 0 585 272 89 25 chr3 185471271 185471506 -32565652 - MIR SINE MIR 0 262 13 2232 82 0 7 chr3 185471779 185472071 -32565087 - AluY SINE Alu -21 290 1 225 202 11 21 chr3 185472283 185472377 -32564781 + G-rich Low_complexity Low_complexity 3 95 0 305 266 0 43 chr3 185473195 185473289 -32563869 - L1MC4 LINE L1 -1339 6703 6614 248 246 15 0 chr3 185473818 185473883 -32563275 + MER117 DNA MER1_type 85 150 -47 520 253 73 17 chr3 185474403 185474581 -32562577 - MIR SINE MIR -7 255 68 2250 115 0 7 chr3 185474586 185474882 -32562276 + AluSq SINE Alu 1 294 -19 280 97 0 40 chr3 185474942 185474992 -32562166 + AluJo SINE Alu 117 159 -143 1312 103 0 6 chr3 185474996 185475171 -32561987 + AluSq SINE Alu 121 294 -19 200 319 29 0 chr3 185475615 185475684 -32561474 - MIR3 SINE MIR -24 184 114 2242 129 0 3 chr3 185475725 185476035 -32561123 + AluSx SINE Alu 1 309 -3 2276 105 3 16 chr3 185476249 185476564 -32560594 - AluSx SINE Alu -1 311 1 411 220 60 0 chr3 185477072 185477172 -32559986 + MER53 DNA DNA 1 106 -83 205 259 19 19 chr3 185477327 185477381 -32559777 - MIR SINE MIR -180 82 29 252 0 0 0 chr3 185477383 185477411 -32559747 + (TG)n Simple_repeat Simple_repeat 2 29 0 292 227 204 0 chr3 185477802 185477890 -32559268 + MIR SINE MIR 38 143 -65 2193 119 3 0 chr3 185478176 185478470 -32558688 + AluSx SINE Alu 1 295 -17 1124 129 12 0 chr3 185478481 185478651 -32558507 + AluSg/x SINE Alu 131 302 -10 515 305 96 45 chr3 185479261 185479707 -32557451 - L2 LINE L2 -337 2977 2509 2015 141 0 26 chr3 185480054 185480366 -32556792 + AluSx SINE Alu 1 304 -8 246 158 139 99 chr3 185480401 185480422 -32556736 + L1MC5 LINE L1 7812 7831 -130 180 97 0 0 chr3 185480422 185480453 -32556705 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1567 182 0 45 chr3 185480456 185480629 -32556529 - AluJo SINE Alu -35 277 121 2313 97 0 26 chr3 185480629 185480939 -32556219 - AluY SINE Alu -9 302 1 1567 182 0 45 chr3 185480939 185481051 -32556107 - AluJo SINE Alu -191 121 5 246 158 139 99 chr3 185481051 185481126 -32556032 + L1MC5 LINE L1 7832 7916 -45 689 250 40 85 chr3 185481519 185481871 -32555287 + L2 LINE L2 2811 3146 -167 634 112 47 16 chr3 185482251 185482384 -32554774 + L1MA1 LINE L1 5966 6106 -197 352 101 87 0 chr3 185482379 185482448 -32554710 - L1MA3 LINE L1 -122 6183 6109 * 1398 60 5 45 chr3 185482448 185482471 -32554687 + L1MA2 LINE L1 6113 6135 -169 2108 130 0 0 chr3 185482471 185482778 -32554380 + AluSq SINE Alu 1 307 0 1398 60 5 45 chr3 185482778 185482941 -32554217 + L1MA2 LINE L1 6135 6304 0 376 326 95 58 chr3 185483754 185484184 -32552974 - L2 LINE L2 0 3272 2827 789 161 15 8 chr3 185484280 185484410 -32552748 - AluSq/x SINE Alu -180 132 2 26 0 0 0 chr3 185485336 185485362 -32551796 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr3 185485850 185485872 -32551286 + AT_rich Low_complexity Low_complexity 1 22 0 2267 119 10 0 chr3 185485896 185486206 -32550952 - AluSq SINE Alu 0 313 1 2037 138 19 41 chr3 185486309 185486672 -32550486 + L1MB2 LINE L1 5814 6168 -3 2035 134 3 7 chr3 185486704 185487002 -32550156 + AluSx SINE Alu 1 297 -15 587 168 87 29 chr3 185487002 185487175 -32549983 + HsTC2 DNA Tc2 1614 1796 -102 227 182 0 0 chr3 185487326 185487370 -32549788 - LTR67 LTR ERVL -36 521 478 1390 291 119 41 chr3 185487391 185488369 -32548789 + HAL1 LINE L1 12 1065 -1442 315 0 0 0 chr3 185488419 185488454 -32548704 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2307 97 0 0 chr3 185488461 185488749 -32548409 - AluSx SINE Alu -24 288 1 2021 114 11 78 chr3 185488789 185489196 -32547962 + MER52C LTR ERV1 860 1278 0 1054 179 105 49 chr3 185489196 185489520 -32547638 + L1MB7 LINE L1 5799 6140 -44 612 269 145 0 chr3 185489529 185489778 -32547380 + HAL1 LINE L1 2093 2377 -130 21 36 0 0 chr3 185489837 185489865 -32547293 + AT_rich Low_complexity Low_complexity 1 28 0 271 290 26 98 chr3 185490314 185490507 -32546651 - LTR67 LTR ERVL -195 362 184 2248 92 6 48 chr3 185490554 185490870 -32546288 + AluSx SINE Alu 3 305 -7 317 26 0 0 chr3 185490870 185490909 -32546249 - LTR38B LTR ERV1 -571 39 1 2237 88 57 0 chr3 185491704 185492000 -32545158 + AluSp SINE Alu 1 313 0 472 265 26 33 chr3 185492239 185492390 -32544768 + MLT1I LTR MaLR 72 221 -188 312 299 60 8 chr3 185492493 185492610 -32544548 - L2 LINE L2 -11 3261 3139 184 356 100 31 chr3 185492795 185492955 -32544203 - L2 LINE L2 -377 2937 2767 5314 134 178 10 chr3 185493157 185494164 -32542994 + MER52C LTR ERV1 7 1278 0 245 303 16 101 chr3 185494362 185494550 -32542608 - LTR67 LTR ERVL -272 285 114 235 181 12 84 chr3 185494503 185494586 -32542572 - MLT1J LTR MaLR -332 135 42 * 2183 98 0 22 chr3 185495340 185495656 -32541502 - AluSc SINE Alu 0 309 1 2135 114 0 20 chr3 185496091 185496389 -32540769 + AluSx SINE Alu 5 296 -16 367 291 109 0 chr3 185496482 185496647 -32540511 - MIR SINE MIR -8 254 72 453 179 36 0 chr3 185497176 185497260 -32539898 - MLT1B LTR MaLR 0 390 304 415 202 75 0 chr3 185497425 185497519 -32539639 - MLT1B LTR MaLR -100 290 190 1207 82 0 0 chr3 185497521 185497668 -32539490 - AluSc SINE Alu -162 147 1 1944 94 54 11 chr3 185498267 185498544 -32538614 + AluSx SINE Alu 9 297 -15 974 194 0 28 chr3 185498612 185498792 -32538366 + FAM SINE Alu 1 175 0 2395 83 0 13 chr3 185498999 185499300 -32537858 - AluSq SINE Alu -16 297 1 366 320 0 48 chr3 185499347 185499472 -32537686 - L2 LINE L2 -15 3298 3180 612 167 22 127 chr3 185499726 185499892 -32537266 - MER113 DNA MER1_type? -297 224 87 1899 140 38 0 chr3 185499892 185500185 -32536973 + AluJb SINE Alu 5 308 -4 612 167 22 127 chr3 185500185 185500246 -32536912 - MER113 DNA MER1_type? -434 87 21 239 266 0 0 chr3 185500500 185500564 -32536594 + G-rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr3 185500765 185500786 -32536372 + GC_rich Low_complexity Low_complexity 1 21 0 2043 138 3 3 chr3 185501929 185502234 -32534924 + AluSc SINE Alu 1 305 -4 408 59 0 0 chr3 185502761 185502812 -32534346 - Alu SINE Alu -260 52 2 389 306 50 31 chr3 185504013 185504274 -32532884 + L2 LINE L2 2393 2658 -656 1301 116 32 0 chr3 185504400 185504590 -32532568 + AluSp SINE Alu 113 308 -5 1650 121 52 26 chr3 185504598 185504903 -32532255 + AluSq SINE Alu 1 313 0 2441 81 13 0 chr3 185504941 185505249 -32531909 + AluSx SINE Alu 1 312 0 2376 110 0 0 chr3 185505373 185505681 -32531477 - AluSx SINE Alu -4 308 1 1428 211 0 7 chr3 185506766 185507041 -32530117 + AluJo SINE Alu 1 273 -39 2624 173 109 60 chr3 185507041 185507417 -32529741 + L1ME2 LINE L1 5404 5760 -404 1997 106 22 67 chr3 185507417 185507729 -32529429 - AluSq SINE Alu -15 298 1 2624 173 109 60 chr3 185507729 185508069 -32529089 + L1ME2 LINE L1 5760 6155 -9 1763 161 0 14 chr3 185508591 185508877 -32528281 - AluJb SINE Alu -25 287 6 23 33 0 0 chr3 185508958 185508988 -32528170 + AT_rich Low_complexity Low_complexity 1 30 0 518 215 174 23 chr3 185509397 185509616 -32527542 + MIR SINE MIR 1 252 -10 1937 143 27 0 chr3 185509870 185510170 -32526988 + AluJb SINE Alu 1 308 -4 2061 139 0 16 chr3 185510876 185511193 -32525965 + AluSx SINE Alu 1 312 0 565 176 105 85 chr3 185511328 185511481 -32525677 - MER2 DNA MER2_type -189 156 1 365 225 0 0 chr3 185511556 185511636 -32525522 - MER116 DNA Mariner 0 80 1 2150 113 3 0 chr3 185511703 185512022 -32525136 + AluSg SINE Alu 1 320 0 335 155 0 0 chr3 185512456 185512514 -32524644 - HsTC2 DNA Tc2 -1812 86 29 2206 110 0 17 chr3 185513171 185513471 -32523687 - AluSx SINE Alu -17 295 1 276 316 168 0 chr3 185513617 185513712 -32523446 - MIR SINE MIR -66 142 32 836 270 90 22 chr3 185514148 185514559 -32522599 + L1ME4a LINE L1 5526 5964 -157 222 179 30 15 chr3 185514579 185514646 -32522512 + (CATATA)n Simple_repeat Simple_repeat 3 70 0 377 320 96 0 chr3 185514827 185514983 -32522175 - MIR SINE MIR -33 229 59 243 0 0 0 chr3 185515039 185515066 -32522092 + (CA)n Simple_repeat Simple_repeat 1 27 0 341 305 148 25 chr3 185515507 185515743 -32521415 + L2 LINE L2 2598 2862 -452 236 302 114 89 chr3 185515813 185516128 -32521030 + L2 LINE L2 2941 3263 -9 2148 119 3 3 chr3 185517194 185517506 -32519652 + AluSx SINE Alu 1 312 0 1527 154 12 136 chr3 185517700 185517832 -32519326 + AluSq SINE Alu 2 70 -233 2364 60 3 0 chr3 185517832 185518117 -32519041 + AluY SINE Alu 1 286 -25 1527 154 12 136 chr3 185518117 185518315 -32518843 + AluSq SINE Alu 70 291 -12 2150 113 3 0 chr3 185519420 185519713 -32517445 - AluSq SINE Alu -19 294 1 260 187 77 55 chr3 185521061 185521152 -32516006 - MIR SINE MIR -50 212 120 2121 125 0 10 chr3 185521266 185521570 -32515588 + AluSx SINE Alu 1 301 -11 364 250 64 48 chr3 185521927 185522095 -32515063 - MIR SINE MIR -59 203 38 534 156 83 9 chr3 185522108 185522217 -32514941 + MLT1A2 LTR MaLR 1 117 -257 1017 173 48 48 chr3 185522332 185522563 -32514595 + MLT1A2 LTR MaLR 140 370 -4 2453 71 0 0 chr3 185522987 185523281 -32513877 - AluSc SINE Alu -15 294 1 22 43 0 21 chr3 185523991 185524007 -32513151 + AT_rich Low_complexity Low_complexity 1 16 -30 2162 108 0 0 chr3 185524007 185524294 -32512864 - AluSx SINE Alu -25 287 1 22 43 0 21 chr3 185524294 185524324 -32512834 + AT_rich Low_complexity Low_complexity 16 46 0 244 164 98 16 chr3 185524545 185524606 -32512552 + MIR SINE MIR 181 246 -16 2245 102 0 0 chr3 185524944 185525255 -32511903 - AluSx SINE Alu 0 311 1 201 129 0 0 chr3 185525303 185525334 -32511824 + (CA)n Simple_repeat Simple_repeat 2 32 0 187 151 0 57 chr3 185526723 185526776 -32510382 + GA-rich Low_complexity Low_complexity 3 52 0 194 171 49 85 chr3 185527235 185527317 -32509841 - MER5C DNA MER1_type -224 100 22 1935 108 4 0 chr3 185527449 185527707 -32509451 + AluSx SINE Alu 29 287 -25 1670 146 33 7 chr3 185527724 185528025 -32509133 + AluSx SINE Alu 1 308 0 2206 126 0 0 chr3 185528214 185528524 -32508634 + AluSg SINE Alu 1 310 0 235 338 54 14 chr3 185530072 185530220 -32506938 - MER20B DNA MER1_type -583 200 47 2074 103 0 0 chr3 185530226 185530499 -32506659 - AluY SINE Alu 0 311 39 238 224 104 0 chr3 185530715 185530782 -32506376 + L2 LINE L2 3240 3313 0 214 297 103 36 chr3 185530983 185531148 -32506010 - L2 LINE L2 -211 3061 2886 537 286 127 5 chr3 185531355 185531544 -32505614 + MIR SINE MIR 3 214 -48 279 365 10 10 chr3 185532007 185532111 -32505047 - MER5A DNA MER1_type 0 189 86 813 281 82 0 chr3 185532142 185532373 -32504785 - MIR SINE MIR -1 261 12 1398 269 34 55 chr3 185532509 185532547 -32504611 + L1MEc LINE L1 1140 1177 -5219 2246 118 3 0 chr3 185532547 185532853 -32504305 - AluSp SINE Alu -6 307 1 1398 269 34 55 chr3 185532853 185533237 -32503921 + L1MEc LINE L1 1177 1545 -4851 1563 202 0 36 chr3 185533237 185533544 -32503614 - AluJb SINE Alu -3 309 14 1398 269 34 55 chr3 185533544 185533789 -32503369 + L1MEc LINE L1 1545 1794 -4602 1039 188 53 0 chr3 185534082 185534290 -32502868 - AluJb SINE Alu -7 305 87 601 175 0 26 chr3 185534299 185534413 -32502745 + L1MB2 LINE L1 5206 5316 -830 4791 156 10 44 chr3 185535818 185536711 -32500447 + L1MB2 LINE L1 5308 6170 -1 2321 109 0 0 chr3 185536714 185537026 -32500132 + AluSx SINE Alu 1 312 0 21 36 0 0 chr3 185538211 185538239 -32498919 + AT_rich Low_complexity Low_complexity 1 28 0 2424 71 0 34 chr3 185541177 185541499 -32495659 + AluY SINE Alu 1 311 0 1743 163 3 23 chr3 185541668 185541975 -32495183 + AluJb SINE Alu 1 301 -11 245 29 29 0 chr3 185542088 185542122 -32495036 + (CAA)n Simple_repeat Simple_repeat 2 36 0 468 269 25 0 chr3 185542283 185542402 -32494756 - MIR SINE MIR -128 134 13 21 36 0 0 chr3 185543702 185543730 -32493428 + AT_rich Low_complexity Low_complexity 1 28 0 1699 155 30 7 chr3 185545498 185545795 -32491363 + L1MC1 LINE L1 6029 6332 -1 1120 251 90 39 chr3 185546520 185546907 -32490251 + LTR16C LTR ERVL 85 491 0 2469 76 23 0 chr3 185547084 185547388 -32489770 - AluSx SINE Alu -1 311 1 1202 143 13 46 chr3 185547399 185547636 -32489522 - L1MA10 LINE L1 -2 6332 6104 1439 151 13 0 chr3 185547636 185547874 -32489284 + L1MB1 LINE L1 5849 6089 -100 2070 134 0 7 chr3 185547874 185548179 -32488979 + AluSx SINE Alu 1 303 -9 2321 96 36 30 chr3 185548950 185549106 -32488052 - L1MA3 LINE L1 0 6305 6151 354 115 0 0 chr3 185549106 185549167 -32487991 + (TTTA)n Simple_repeat Simple_repeat 2 62 0 2314 84 0 0 chr3 185549167 185549451 -32487707 - AluY SINE Alu -27 284 1 2206 115 0 0 chr3 185549453 185549748 -32487410 - AluSx SINE Alu -17 295 1 2321 96 36 30 chr3 185549748 185549950 -32487208 - L1MA3 LINE L1 -154 6151 5941 2274 100 10 0 chr3 185550375 185550684 -32486474 + AluSq SINE Alu 1 312 -1 284 211 18 0 chr3 185551295 185551352 -32485806 - L2 LINE L2 -4 3309 3252 1430 187 57 101 chr3 185551362 185551403 -32485755 - MLT1B LTR MaLR -1 389 348 2300 97 7 3 chr3 185551403 185551711 -32485447 + AluSp SINE Alu 1 309 -4 1430 187 57 101 chr3 185551711 185552076 -32485082 - MLT1B LTR MaLR -42 348 1 307 336 91 0 chr3 185552970 185553080 -32484078 + MIR SINE MIR 27 146 -116 2297 244 55 123 chr3 185553134 185553945 -32483213 - L2 LINE L2 -467 2847 2032 357 111 4 143 chr3 185553945 185554004 -32483154 - L1MA8 LINE L1 -73 6218 6171 2182 121 3 0 chr3 185554004 185554309 -32482849 - AluSq SINE Alu -7 306 1 357 111 4 143 chr3 185554309 185554343 -32482815 - L1MA8 LINE L1 -120 6171 6134 2297 244 55 123 chr3 185554343 185554552 -32482606 - L2 LINE L2 -1282 2032 1810 1895 131 0 0 chr3 185554972 185555231 -32481927 + AluSg SINE Alu 1 259 -51 236 355 0 0 chr3 185555630 185555706 -32481452 - MIR3 SINE MIR -7 201 126 2362 94 0 0 chr3 185555817 185556105 -32481053 + AluSg SINE Alu 1 288 -22 766 104 7 30 chr3 185556108 185556243 -32480915 + L1MA7 LINE L1 6132 6263 -28 472 47 16 0 chr3 185556815 185556879 -32480279 + MER41A LTR ERV1 402 466 -88 2143 114 0 7 chr3 185556955 185557253 -32479905 + AluSg1 SINE Alu 1 296 -13 2568 48 0 3 chr3 185558793 185559105 -32478053 - AluY SINE Alu 0 311 1 21 0 0 0 chr3 185559508 185559529 -32477629 + AT_rich Low_complexity Low_complexity 1 21 0 507 287 30 42 chr3 185560238 185560405 -32476753 - LTR67 LTR ERVL -385 172 8 22 0 0 0 chr3 185560984 185561006 -32476152 + AT_rich Low_complexity Low_complexity 1 22 0 760 279 5 16 chr3 185561032 185561222 -32475936 + MIR SINE MIR 1 188 -74 2394 93 0 3 chr3 185562080 185562391 -32474767 - AluSg SINE Alu 0 310 1 911 182 39 0 chr3 185562976 185563130 -32474028 - AluJb SINE Alu -152 160 1 439 301 163 35 chr3 185565228 185565839 -32471319 - L2 LINE L2 -38 3234 2554 1809 157 18 9 chr3 185565852 185566183 -32470975 + L1M1 LINE L1 11 344 -7221 789 350 131 23 chr3 185566226 185566996 -32470162 - L2 LINE L2 -1057 2257 1359 281 47 23 0 chr3 185566996 185567039 -32470119 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 789 350 131 23 chr3 185567039 185567239 -32469919 - L2 LINE L2 -1955 1359 1182 276 298 99 46 chr3 185567498 185567649 -32469509 - L2 LINE L2 0 3272 3114 516 209 78 8 chr3 185568175 185568304 -32468854 + MER63 DNA MER1_type 5 768 -68 1044 177 44 65 chr3 185568392 185568686 -32468472 + MER63 DNA MER1_type 774 1061 -1 940 246 30 80 chr3 185568686 185568769 -32468389 + L2 LINE L2 2555 2641 -673 4610 46 18 0 chr3 185568769 185569339 -32467819 - L1PA10 LINE L1 -4 6164 5585 940 246 30 80 chr3 185569339 185569592 -32467566 + L2 LINE L2 2641 2874 -440 2271 96 0 13 chr3 185570551 185570852 -32466306 + AluSg SINE Alu 1 297 -13 881 200 44 88 chr3 185571268 185571750 -32465408 + MLT1F1 LTR MaLR 10 567 0 232 130 174 0 chr3 185572866 185572912 -32464246 + L1MB4 LINE L1 5758 5811 -1997 * 1074 204 42 47 chr3 185572911 185573318 -32463840 + L1MC5 LINE L1 7110 7514 -447 368 168 158 0 chr3 185573342 185573437 -32463721 + L1MB4 LINE L1 6045 6154 -26 504 180 97 35 chr3 185573467 185573695 -32463463 + L1MC5 LINE L1 7524 7765 -196 1606 231 19 50 chr3 185573696 185574160 -32462998 - LTR40c LTR ERVL -12 453 4 488 203 11 82 chr3 185574163 185574345 -32462813 + L1MC5 LINE L1 7749 7917 -44 1324 87 0 0 chr3 185574440 185574601 -32462557 + AluSg/x SINE Alu 137 297 -15 252 86 0 0 chr3 185575027 185575062 -32462096 - AluSc SINE Alu -10 289 255 878 138 169 11 chr3 185575290 185575479 -32461679 - Tigger1 DNA MER2_type 0 2418 2200 653 190 0 0 chr3 185575475 185575591 -32461567 - Tigger1 DNA MER2_type -2279 139 24 * 2210 129 0 0 chr3 185576249 185576559 -32460599 + AluSx SINE Alu 1 310 -2 412 276 86 0 chr3 185578512 185578628 -32458530 - L2 LINE L2 0 3272 3147 342 0 0 0 chr3 185578667 185578705 -32458453 + (TG)n Simple_repeat Simple_repeat 2 39 0 1705 144 30 34 chr3 185580994 185581292 -32455866 - AluJb SINE Alu -15 297 1 2478 65 3 3 chr3 185581961 185582270 -32454888 - AluY SINE Alu -2 309 1 21 89 0 0 chr3 185582280 185582336 -32454822 + AT_rich Low_complexity Low_complexity 1 56 0 735 261 94 87 chr3 185582488 185582914 -32454244 - MLT1K LTR MaLR 0 588 160 2573 14 0 3 chr3 185582955 185583243 -32453915 - AluYb8 SINE Alu 0 318 32 1641 184 75 0 chr3 185583470 185583791 -32453367 + MER7A DNA MER2_type 1 343 -3 1262 238 113 24 chr3 185583828 185584281 -32452877 + LTR33 LTR ERVL 22 514 -7 323 244 24 0 chr3 185584292 185584374 -32452784 - MLT1K LTR MaLR -36 552 469 554 204 0 0 chr3 185584382 185584485 -32452673 - MLT1A1 LTR MaLR -262 103 1 21 0 0 0 chr3 185584495 185584516 -32452642 + AT_rich Low_complexity Low_complexity 1 21 0 2461 46 0 16 chr3 185584517 185584820 -32452338 - AluY SINE Alu -12 299 2 253 333 43 0 chr3 185585356 185585449 -32451709 + MIR3 SINE MIR 101 197 -11 308 94 19 0 chr3 185585482 185585535 -32451623 + (TG)n Simple_repeat Simple_repeat 2 55 0 28 29 0 0 chr3 185586601 185586636 -32450522 + AT_rich Low_complexity Low_complexity 1 35 0 590 269 111 39 chr3 185586795 185587129 -32450029 - L1MC4a LINE L1 -1927 5881 5524 376 179 12 48 chr3 185587145 185587229 -32449929 - MER93b LTR ERV1 -292 81 1 539 167 20 0 chr3 185587310 185587412 -32449746 - MSTD LTR MaLR -51 345 242 3205 194 42 14 chr3 185588257 185589037 -32448121 + L1MC4a LINE L1 7001 7802 -6 24 0 0 0 chr3 185589049 185589073 -32448085 + AT_rich Low_complexity Low_complexity 1 24 0 781 181 87 13 chr3 185590110 185590259 -32446899 - FRAM SINE Alu -14 162 3 332 313 100 80 chr3 185590716 185591067 -32446091 - L2 LINE L2 0 3272 2915 1019 157 6 12 chr3 185591902 185592068 -32445090 - FRAM SINE Alu -18 158 1 24 0 0 0 chr3 185592159 185592183 -32444975 + AT_rich Low_complexity Low_complexity 1 24 0 289 311 45 15 chr3 185592874 185593006 -32444152 - L2 LINE L2 -1161 2153 2018 2375 254 66 30 chr3 185593020 185593070 -32444088 + L2 LINE L2 2182 2229 -1084 891 229 57 92 chr3 185593070 185593632 -32443526 - MER34 LTR ERV1 0 542 1 2375 254 66 30 chr3 185593632 185594496 -32442662 + L2 LINE L2 2229 3124 -189 984 220 108 24 chr3 185594513 185594809 -32442349 - MER2 DNA MER2_type 0 345 25 227 200 0 0 chr3 185594847 185594892 -32442266 - MER8 DNA MER2_type -194 45 1 671 226 18 36 chr3 185594892 185595060 -32442098 + L2 LINE L2 3149 3313 0 1768 167 7 7 chr3 185595140 185595446 -32441712 + AluJb SINE Alu 1 306 -6 36 0 0 0 chr3 185595593 185595629 -32441529 + AT_rich Low_complexity Low_complexity 1 36 0 445 334 103 30 chr3 185595736 185596038 -32441120 - L2 LINE L2 -648 2666 2343 303 256 73 79 chr3 185596931 185597095 -32440063 + L1ME4a LINE L1 5831 5993 -128 1466 199 3 17 chr3 185597095 185597391 -32439767 + AluJo SINE Alu 4 295 -17 268 318 8 71 chr3 185597742 185597868 -32439290 + MIR SINE MIR 26 143 -65 341 266 28 28 chr3 185597958 185598067 -32439091 + MER5A DNA MER1_type 78 186 -3 219 69 0 0 chr3 185598459 185598488 -32438670 + (GGGTG)n Simple_repeat Simple_repeat 2 30 0 393 254 35 35 chr3 185599913 185600027 -32437131 + MIR SINE MIR 11 124 -138 442 248 71 28 chr3 185601084 185601225 -32435933 - MIR3 SINE MIR -48 160 14 1623 168 13 26 chr3 185602579 185602882 -32434276 - AluJo SINE Alu -13 299 1 188 359 178 20 chr3 185603423 185603821 -32433337 + L2 LINE L2 2425 2885 -429 1358 185 0 47 chr3 185603952 185604228 -32432930 - AluJb SINE Alu -39 273 11 2122 128 0 3 chr3 185604891 185605189 -32431969 + AluSx SINE Alu 2 298 -14 2319 103 0 0 chr3 185606509 185606809 -32430349 + AluSx SINE Alu 1 300 -12 1514 167 107 7 chr3 185607625 185607895 -32429263 + AluJo SINE Alu 1 297 -15 22 56 0 0 chr3 185608747 185608783 -32428375 + AT_rich Low_complexity Low_complexity 1 36 0 185 65 32 0 chr3 185609198 185609229 -32427929 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 2282 66 0 0 chr3 185609508 185609781 -32427377 + AluY SINE Alu 1 273 -38 2059 144 0 0 chr3 185609954 185610252 -32426906 + AluSx SINE Alu 1 298 -14 699 226 7 7 chr3 185610320 185610457 -32426701 - MIR SINE MIR -125 137 1 460 257 193 57 chr3 185613232 185613528 -32423630 - L2 LINE L2 -61 3252 2917 400 304 7 7 chr3 185614275 185614413 -32422745 + GA-rich Low_complexity Low_complexity 2 139 0 1096 268 106 55 chr3 185614938 185615408 -32421750 - MLT1J LTR MaLR -14 497 4 203 170 43 21 chr3 185615737 185615784 -32421374 - MER5B DNA MER1_type -130 48 1 238 376 110 23 chr3 185615805 185616068 -32421090 - L2 LINE L2 -55 3217 2932 2200 115 3 0 chr3 185616756 185617051 -32420107 - AluSx SINE Alu -16 296 1 335 256 58 16 chr3 185617917 185618038 -32419120 + L1ME LINE L1 5574 5699 -422 1421 151 53 8 chr3 185618252 185618497 -32418661 - AluJb SINE Alu -27 285 30 1744 192 27 0 chr3 185618655 185618947 -32418211 + AluJb SINE Alu 1 300 -12 552 304 68 11 chr3 185618966 185619157 -32418001 - MIR SINE MIR -33 229 28 239 315 124 0 chr3 185619275 185619364 -32417794 + MER5B DNA MER1_type 31 130 -48 452 97 28 0 chr3 185619570 185619642 -32417516 + MER116 DNA Mariner 1 74 -6 21 0 0 0 chr3 185620067 185620088 -32417070 + AT_rich Low_complexity Low_complexity 1 21 0 967 109 68 47 chr3 185620090 185620282 -32416876 - L1MA7 LINE L1 -2 6289 6094 1661 166 43 0 chr3 185620614 185620892 -32416266 - AluJo SINE Alu -22 290 1 391 70 38 70 chr3 185621435 185621620 -32415538 + (TA)n Simple_repeat Simple_repeat 1 179 0 1003 209 28 0 chr3 185621623 185621805 -32415353 - AluJo SINE Alu -23 289 103 629 258 0 0 chr3 185622786 185622906 -32414252 + FLAM_A SINE Alu 1 120 -13 259 145 14 58 chr3 185622907 185622976 -32414182 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 1548 127 111 4 chr3 185622980 185623232 -32413926 + AluJo SINE Alu 22 300 -12 736 186 70 105 chr3 185623277 185623562 -32413596 - ORSL DNA AcHobo 0 275 1 597 146 164 18 chr3 185623858 185623968 -32413190 - FRAM SINE Alu -54 122 1 2116 181 135 5 chr3 185627178 185627621 -32409537 + MER82 DNA MER2_type 3 503 -150 348 155 35 0 chr3 185627649 185627707 -32409451 + MER82 DNA MER2_type 594 653 0 231 241 111 0 chr3 185627884 185627938 -32409220 - L2 LINE L2 -2 3270 3211 613 195 136 7 chr3 185628011 185628165 -32408993 + LTR33 LTR ERVL 1 174 -347 2177 99 0 7 chr3 185628971 185629278 -32407880 - AluSx SINE Alu 0 305 1 1608 168 119 51 chr3 185629278 185629688 -32407470 - Charlie4a DNA MER1_type -70 438 1 1653 182 10 17 chr3 185629903 185630199 -32406959 - AluJb SINE Alu -18 294 1 422 330 145 56 chr3 185630257 185630630 -32406528 - L2 LINE L2 -1 3271 2866 831 290 47 16 chr3 185630822 185631077 -32406081 + MLT1K LTR MaLR 322 584 -4 1991 173 80 27 chr3 185631362 185631435 -32405723 - MSTD LTR MaLR 0 396 328 2219 119 0 0 chr3 185631435 185631730 -32405428 + AluSx SINE Alu 5 299 -13 1991 173 80 27 chr3 185631730 185632032 -32405126 - MSTD LTR MaLR -68 328 1 2184 94 14 3 chr3 185632874 185633162 -32403996 + AluSc SINE Alu 1 291 -18 216 271 0 0 chr3 185633546 185633594 -32403564 - L2 LINE L2 -1 3271 3224 194 33 67 0 chr3 185633762 185633792 -32403366 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2288 97 3 3 chr3 185634033 185634343 -32402815 + AluSq SINE Alu 1 310 -3 979 217 121 47 chr3 185634966 185635288 -32401870 - L1ME3A LINE L1 -15 6155 5810 1742 54 0 5 chr3 185636081 185636285 -32400873 - L1PA6 LINE L1 -11 6143 5941 285 299 44 22 chr3 185636397 185636534 -32400624 - LTR67 LTR ERVL -8 549 410 2465 69 0 7 chr3 185636763 185637067 -32400091 - AluY SINE Alu -9 302 1 1763 159 3 20 chr3 185637257 185637559 -32399599 + AluJo SINE Alu 6 302 -10 708 283 162 42 chr3 185638056 185638931 -32398227 - L2 LINE L2 -728 2586 1607 1565 136 24 109 chr3 185639199 185639394 -32397764 - AluYb8 SINE Alu -15 303 146 2453 80 0 6 chr3 185639394 185639707 -32397451 - AluY SINE Alu 0 311 1 1565 136 24 109 chr3 185639707 185639842 -32397316 - AluYb8 SINE Alu -172 146 1 334 221 12 105 chr3 185639847 185640019 -32397139 - L1MC4a LINE L1 -1826 5982 5827 1644 187 0 3 chr3 185640135 185640442 -32396716 - AluJb SINE Alu 0 306 1 2236 118 0 0 chr3 185641112 185641418 -32395740 + AluSx SINE Alu 1 306 -6 424 189 21 0 chr3 185641428 185641523 -32395635 + L1M4 LINE L1 5069 5165 -981 663 191 23 23 chr3 185641532 185641663 -32395495 + AluJo SINE Alu 8 138 -174 1378 120 7 155 chr3 185641689 185642137 -32395021 + L1P5 LINE L1 5188 5578 -576 1585 163 6 78 chr3 185642137 185642302 -32394856 - AluJo SINE Alu -15 297 165 2104 112 0 3 chr3 185642302 185642589 -32394569 - AluSx SINE Alu -23 289 4 1585 163 6 78 chr3 185642589 185642743 -32394415 - AluJo SINE Alu -147 165 1 1378 120 7 155 chr3 185642743 185642776 -32394382 + L1P5 LINE L1 5578 5614 -540 2044 132 0 13 chr3 185642810 185643113 -32394045 + AluSx SINE Alu 1 299 -13 1712 169 102 39 chr3 185643136 185643466 -32393692 + Charlie1b DNA MER1_type 33 341 -2420 1685 167 21 0 chr3 185643466 185643747 -32393411 - AluJo SINE Alu -17 295 9 1712 169 102 39 chr3 185643747 185643760 -32393398 + Charlie1b DNA MER1_type 341 352 -2409 2295 109 0 10 chr3 185643760 185644073 -32393085 - AluSg SINE Alu 0 310 1 1712 169 102 39 chr3 185644073 185644190 -32392968 + Charlie1b DNA MER1_type 352 523 0 435 160 0 75 chr3 185644899 185644971 -32392187 - L1M4 LINE L1 -644 5540 5464 7903 111 40 26 chr3 185644971 185645179 -32391979 + Tigger3b DNA MER2_type 2 206 -2822 2200 88 3 7 chr3 185645179 185645473 -32391685 + AluSx SINE Alu 2 294 -18 7903 111 40 26 chr3 185645473 185645894 -32391264 + Tigger3b DNA MER2_type 206 620 -2408 2313 91 0 7 chr3 185645894 185646192 -32390966 + AluSg SINE Alu 1 296 -14 7903 111 40 26 chr3 185646192 185646774 -32390384 + Tigger3b DNA MER2_type 620 1231 0 435 160 0 75 chr3 185646774 185646795 -32390363 - L1M4 LINE L1 -720 5464 5454 638 284 62 21 chr3 185647034 185647228 -32389930 + LTR16C LTR ERVL 60 261 -230 4763 156 10 35 chr3 185647260 185648141 -32389017 - L1MB7 LINE L1 -16 6168 5309 593 252 8 0 chr3 185648144 185648271 -32388887 + LTR16C LTR ERVL 249 376 -115 1260 182 0 18 chr3 185648272 185648492 -32388666 - MLT1C LTR MaLR -2 465 250 192 259 250 9 chr3 185648635 185648747 -32388411 + L2 LINE L2 2897 3035 -237 351 209 99 11 chr3 185648823 185648914 -32388244 + MLT1K LTR MaLR 352 450 -138 2234 94 13 0 chr3 185649091 185649390 -32387768 + AluSx SINE Alu 1 303 -9 2072 132 0 0 chr3 185649390 185649670 -32387488 - AluSx SINE Alu -31 281 1 2572 162 28 28 chr3 185649762 185650257 -32386901 - MLT1D LTR MaLR -4 501 7 331 278 104 26 chr3 185650367 185650482 -32386676 - L2 LINE L2 -1 3271 3148 1030 202 22 18 chr3 185650848 185651076 -32386082 + L1MC5 LINE L1 7697 7925 -36 2261 119 0 0 chr3 185651081 185651393 -32385765 + AluSx SINE Alu 1 312 0 406 257 88 0 chr3 185651998 185652111 -32385047 + MIR SINE MIR 87 209 -53 2118 111 10 33 chr3 185652307 185652614 -32384544 + AluSx SINE Alu 1 300 -12 392 327 76 5 chr3 185652660 185652883 -32384275 + L2 LINE L2 2463 2701 -613 701 143 54 48 chr3 185652889 185653057 -32384101 - L1MC5 LINE L1 -36 7925 7757 481 325 75 60 chr3 185653090 185653593 -32383565 + L2 LINE L2 2762 3266 -6 2373 170 61 51 chr3 185653820 185654313 -32382845 - LTR54 LTR ERV1 -11 499 2 528 295 94 4 chr3 185654477 185654711 -32382447 - MIR SINE MIR 0 262 8 1337 174 15 92 chr3 185655380 185655708 -32381450 - MER33 DNA MER1_type -21 303 1 5426 82 51 21 chr3 185655733 185656477 -32380681 + MER4E LTR ERV1 1 766 0 1208 36 0 0 chr3 185656614 185656751 -32380407 + AluSg/x SINE Alu 166 302 -8 677 182 129 6 chr3 185656913 185657083 -32380075 + MIR SINE MIR 60 250 -12 2272 115 0 0 chr3 185657362 185657658 -32379500 - AluSq SINE Alu -17 296 1 2355 101 0 7 chr3 185658038 185658344 -32378814 + AluSx SINE Alu 1 304 -8 662 248 24 44 chr3 185658645 185658803 -32378355 + HAL1b LINE L1 567 722 -626 4313 125 16 13 chr3 185658803 185659435 -32377723 - MER41B LTR ERV1 -1 634 1 662 248 24 44 chr3 185659435 185659482 -32377676 + HAL1b LINE L1 722 768 -580 393 277 84 28 chr3 185659533 185659746 -32377412 + LTR67 LTR ERVL 331 555 -2 780 213 0 0 chr3 185659771 185659898 -32377260 + FLAM_C SINE Alu 1 127 -6 320 290 61 30 chr3 185659940 185660071 -32377087 + L1ME LINE L1 5524 5658 -2150 1262 237 65 70 chr3 185660082 185660642 -32376516 - L2 LINE L2 -19 3294 2738 1939 143 21 0 chr3 185660642 185660922 -32376236 - AluJb SINE Alu -26 286 1 1262 237 65 70 chr3 185660922 185661117 -32376041 - L2 LINE L2 -575 2738 2543 341 265 41 0 chr3 185661141 185661239 -32375919 + L1ME LINE L1 5689 5790 -331 2097 130 3 13 chr3 185661450 185661765 -32375393 + AluSx SINE Alu 1 312 0 215 312 75 32 chr3 185662205 185662298 -32374860 - MIR SINE MIR -161 101 5 3150 144 50 59 chr3 185662341 185662386 -32374772 - MER49 LTR ERV1 0 923 879 2413 63 0 26 chr3 185662386 185662689 -32374469 + AluY SINE Alu 1 295 -16 3150 144 50 59 chr3 185662689 185662883 -32374275 - MER49 LTR ERV1 -44 879 685 3891 108 0 10 chr3 185662883 185663399 -32373759 - MER9 LTR ERVK 0 511 1 3150 144 50 59 chr3 185663399 185663764 -32373394 - MER49 LTR ERV1 -238 685 324 1410 136 4 38 chr3 185663767 185664003 -32373155 - MER4B LTR ERV1 0 610 383 1287 190 102 55 chr3 185664007 185664429 -32372729 + LTR7 LTR ERV1 1 442 -8 464 164 0 0 chr3 185664435 185664508 -32372650 - MER4A LTR ERV1 -219 445 373 651 103 21 10 chr3 185664555 185664652 -32372506 - MER4A LTR ERV1 -566 98 1 1811 91 28 0 chr3 185664670 185664923 -32372235 - MER49 LTR ERV1 -663 260 1 367 202 39 48 chr3 185665192 185665296 -32371862 - MLT1L LTR MaLR -335 280 178 299 275 66 30 chr3 185665267 185665434 -32371724 - MLT1J LTR MaLR -328 183 11 * 232 257 122 0 chr3 185665539 185665613 -32371545 - MLT1J LTR MaLR -375 136 54 3634 101 148 30 chr3 185665618 185666279 -32370879 - Tigger3(Golem) DNA MER2_type -14 3015 2277 597 219 19 0 chr3 185666270 185666375 -32370783 - Tigger3(Golem) DNA MER2_type -2921 108 2 * 2513 90 0 0 chr3 185666732 185667042 -32370116 - AluSq SINE Alu -3 310 1 223 299 134 0 chr3 185667042 185667169 -32369989 + MIR SINE MIR 119 262 0 3538 153 80 13 chr3 185667529 185668202 -32368956 + LTR62 LTR ERVK 1 718 -1 2136 116 3 0 chr3 185668279 185668584 -32368574 - AluSx SINE Alu 0 306 1 244 178 0 0 chr3 185668610 185668655 -32368503 + L2 LINE L2 3263 3307 -6 2298 95 6 22 chr3 185668818 185669135 -32368023 - AluSx SINE Alu 0 312 1 240 86 0 0 chr3 185669591 185669626 -32367532 + (CGGGG)n Simple_repeat Simple_repeat 2 36 0 23 0 0 0 chr3 185670237 185670260 -32366898 + GC_rich Low_complexity Low_complexity 1 23 0 452 191 85 124 chr3 185670822 185670939 -32366219 + L1MC5 LINE L1 7487 7607 -354 2409 68 3 3 chr3 185670939 185671235 -32365923 + AluSx SINE Alu 3 298 -14 452 191 85 124 chr3 185671235 185671486 -32365672 + L1MC5 LINE L1 7607 7838 -123 1691 66 4 0 chr3 185671486 185671712 -32365446 + L1PA8 LINE L1 5944 6170 -2 452 191 85 124 chr3 185671712 185671787 -32365371 + L1MC5 LINE L1 7838 7914 -47 2311 43 75 0 chr3 185672809 185673090 -32364068 - AluY SINE Alu -9 302 1 1532 136 0 50 chr3 185673717 185673959 -32363199 + AluJb SINE Alu 81 310 -2 1396 138 107 52 chr3 185674054 185674194 -32362964 + AluJo SINE Alu 1 132 -180 180 0 0 0 chr3 185674194 185674214 -32362944 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1396 138 107 52 chr3 185674214 185674363 -32362795 + AluJo SINE Alu 132 306 -6 2330 79 0 0 chr3 185674395 185674673 -32362485 - AluY SINE Alu -15 296 19 2053 113 7 7 chr3 185674682 185674992 -32362166 - AluSq SINE Alu 0 313 1 207 262 107 19 chr3 185675002 185675105 -32362053 - MIR SINE MIR -74 188 77 401 258 207 44 chr3 185675369 185675587 -32361571 + Charlie8 DNA MER1_type 176 456 -1961 2090 101 4 0 chr3 185675587 185675863 -32361295 + AluSp SINE Alu 35 311 -2 401 258 207 44 chr3 185675863 185675939 -32361219 + Charlie8 DNA MER1_type 456 518 -1899 1920 92 33 110 chr3 185676793 185677130 -32360028 + AluY SINE Alu 1 311 0 677 219 100 13 chr3 185677308 185677524 -32359634 + MIR SINE MIR 7 237 -25 31 26 0 0 chr3 185678983 185679021 -32358137 + AT_rich Low_complexity Low_complexity 1 38 0 950 101 1 3 chr3 185679087 185679234 -32357924 + L1PB3 LINE L1 5670 5814 -351 2408 101 8 48 chr3 185679261 185679343 -32357815 + L1PB3 LINE L1 5787 5871 -283 2157 110 31 0 chr3 185679343 185679635 -32357523 - AluSx SINE Alu -7 305 5 2408 101 8 48 chr3 185679635 185679927 -32357231 + L1PB3 LINE L1 5871 6146 -8 21 0 0 0 chr3 185679927 185679948 -32357210 + AT_rich Low_complexity Low_complexity 1 21 0 309 282 74 25 chr3 185680005 185680168 -32356990 - L1ME LINE L1 -347 5774 5604 391 216 41 0 chr3 185680324 185680421 -32356737 + MER5A DNA MER1_type 9 109 -80 633 255 31 86 chr3 185680702 185681028 -32356130 - L1ME4a LINE L1 -215 5906 5599 1291 96 0 0 chr3 185681573 185681740 -32355418 - AluSq SINE Alu -16 297 131 1582 137 12 95 chr3 185681742 185682078 -32355080 - AluSq SINE Alu -1 312 5 2953 207 23 22 chr3 185682130 185682772 -32354386 - L1ME1 LINE L1 -174 5992 5350 795 224 48 64 chr3 185682812 185682953 -32354205 - L1ME1 LINE L1 -782 5364 5222 2270 125 0 0 chr3 185682953 185683264 -32353894 + AluSx SINE Alu 1 311 -1 795 224 48 64 chr3 185683264 185683417 -32353741 - L1ME1 LINE L1 -924 5222 5075 * 4231 216 103 15 chr3 185683411 185683439 -32353719 - L1ME LINE L1 -463 5701 5677 2180 128 0 0 chr3 185683439 185683736 -32353422 - AluSx SINE Alu -15 297 1 4231 216 103 15 chr3 185683736 185685382 -32351776 - L1ME LINE L1 -487 5677 3869 222 37 0 0 chr3 185685608 185685635 -32351523 + (TG)n Simple_repeat Simple_repeat 2 28 0 321 269 0 67 chr3 185685717 185685836 -32351322 - L2 LINE L2 -277 3036 2926 1847 168 44 23 chr3 185685964 185686299 -32350859 - L1MB3 LINE L1 -8 6175 5829 2221 128 0 0 chr3 185686299 185686604 -32350554 - AluSx SINE Alu -7 305 1 1847 168 44 23 chr3 185686604 185686654 -32350504 - L1MB3 LINE L1 -354 5829 5782 2491 58 0 0 chr3 185687150 185687444 -32349714 - AluY SINE Alu -17 294 1 802 136 91 0 chr3 185688811 185688943 -32348215 + U4 snRNA snRNA 1 144 -1 266 255 128 17 chr3 185689854 185689997 -32347161 - MLT1J1 LTR MaLR -279 171 1 2169 267 154 64 chr3 185690125 185690514 -32346644 + L1MC4a LINE L1 5557 5910 -1898 375 105 0 0 chr3 185690514 185690571 -32346587 + (CA)n Simple_repeat Simple_repeat 1 57 0 2169 267 154 64 chr3 185690571 185691188 -32345970 + L1MC4a LINE L1 5910 6470 -1338 1493 114 32 0 chr3 185691188 185691407 -32345751 - L1PA11 LINE L1 -1 6173 5948 2169 267 154 64 chr3 185691407 185691996 -32345162 + L1MC4a LINE L1 6470 7005 -803 1759 155 6 44 chr3 185691996 185692313 -32344845 + AluJo SINE Alu 6 310 -2 2169 267 154 64 chr3 185692313 185692504 -32344654 + L1MC4a LINE L1 7005 7177 -631 2437 91 0 0 chr3 185692504 185692812 -32344346 + AluSx SINE Alu 2 309 -3 2169 267 154 64 chr3 185692812 185692970 -32344188 + L1MC4a LINE L1 7177 7679 -129 228 272 130 0 chr3 185693120 185693212 -32343946 - L1ME4a LINE L1 -47 6074 5971 819 126 0 49 chr3 185693377 185693520 -32343638 + FLAM_C SINE Alu 1 136 -7 344 118 59 0 chr3 185693561 185693629 -32343529 - HsTC2 DNA Tc2 -2 1896 1825 408 134 0 0 chr3 185694501 185694568 -32342590 + AluS SINE Alu 223 289 -13 312 70 0 0 chr3 185694572 185694615 -32342543 + (TGAA)n Simple_repeat Simple_repeat 4 46 0 2482 80 0 6 chr3 185694762 185695076 -32342082 + AluSx SINE Alu 1 312 0 25 0 0 0 chr3 185695525 185695550 -32341608 + AT_rich Low_complexity Low_complexity 1 25 0 2453 90 0 3 chr3 185696017 185696328 -32340830 - AluSg SINE Alu 0 310 1 36 23 0 0 chr3 185696653 185696696 -32340462 + AT_rich Low_complexity Low_complexity 1 43 0 897 239 148 48 chr3 185696709 185697210 -32339948 - HAL1 LINE L1 -407 2100 1550 758 142 9 0 chr3 185697439 185697552 -32339606 - FLAM_A SINE Alu -15 127 14 1531 229 29 123 chr3 185697577 185697641 -32339517 - L1MC4a LINE L1 -1813 5995 5927 2601 55 3 0 chr3 185697641 185697949 -32339209 - AluY SINE Alu -2 309 1 1531 229 29 123 chr3 185697949 185698529 -32338629 - L1MC4a LINE L1 -1881 5927 5440 1990 140 7 0 chr3 185698529 185698815 -32338343 - AluJo SINE Alu -24 288 1 1531 229 29 123 chr3 185698815 185698985 -32338173 - L1MC4a LINE L1 -2368 5440 5256 518 274 46 10 chr3 185699292 185699489 -32337669 - L1MC5 LINE L1 -449 7512 7309 273 167 0 33 chr3 185699589 185699649 -32337509 - L1MC5 LINE L1 -780 7181 7124 2161 111 3 32 chr3 185699650 185699965 -32337193 - AluSx SINE Alu -6 306 1 1126 264 105 15 chr3 185700003 185700889 -32336269 - HAL1 LINE L1 -1255 1252 217 222 239 350 8 chr3 185700903 185701020 -32336138 - MER5A DNA MER1_type -22 167 11 336 197 218 64 chr3 185701098 185701286 -32335872 - L1MC5 LINE L1 -33 7928 7712 835 188 125 0 chr3 185701312 185701488 -32335670 - MLT1B LTR MaLR -2 388 191 724 107 10 10 chr3 185701521 185701624 -32335534 - MLT1B LTR MaLR -283 107 5 911 270 144 17 chr3 185701632 185702217 -32334941 - L1MC5 LINE L1 -346 7615 6957 283 240 20 30 chr3 185702303 185702403 -32334755 - L1ME LINE L1 -332 5789 5691 1041 265 59 30 chr3 185702410 185702656 -32334502 - L1ME2 LINE L1 -30 6134 5868 2676 124 9 52 chr3 185702656 185703021 -32334137 + MSTB LTR MaLR 1 345 -81 2043 122 3 14 chr3 185703021 185703307 -32333851 + AluSx SINE Alu 1 283 -29 2676 124 9 52 chr3 185703307 185703386 -32333772 + MSTB LTR MaLR 345 426 0 1041 265 59 30 chr3 185703386 185703577 -32333581 - L1ME2 LINE L1 -296 5868 5684 2185 130 0 0 chr3 185703578 185703885 -32333273 - AluSx SINE Alu -5 307 1 340 171 11 114 chr3 185703886 185703958 -32333200 + MLT1C LTR MaLR 351 414 -53 2613 159 17 5 chr3 185703958 185704379 -32332779 - MSTB LTR MaLR 0 426 1 340 171 11 114 chr3 185704379 185704394 -32332764 + MLT1C LTR MaLR 414 429 -38 1716 187 0 20 chr3 185704412 185704717 -32332441 + AluJo SINE Alu 3 301 -11 674 189 57 6 chr3 185704767 185704926 -32332232 - L1ME2 LINE L1 -1069 5077 4911 * 1351 205 209 79 chr3 185704913 185705392 -32331766 - L1ME2 LINE L1 -2089 4057 3641 2267 108 3 3 chr3 185705392 185705699 -32331459 - AluSx SINE Alu -5 307 1 1351 205 209 79 chr3 185705699 185705999 -32331159 - L1ME2 LINE L1 -2505 3641 3381 2015 143 0 3 chr3 185705999 185706293 -32330865 - AluJb SINE Alu -19 293 1 1351 205 209 79 chr3 185706293 185706433 -32330725 - L1ME2 LINE L1 -2765 3381 3018 2131 131 0 6 chr3 185706454 185706766 -32330392 + AluSq SINE Alu 1 310 -3 658 219 23 0 chr3 185706967 185707095 -32330063 - MLT1I LTR MaLR -47 362 232 2138 113 0 16 chr3 185708037 185708346 -32328812 - AluSx SINE Alu 0 312 9 299 272 107 53 chr3 185708421 185708590 -32328568 + MIR SINE MIR 11 188 -74 403 228 26 26 chr3 185708806 185708920 -32328238 + Charlie1b DNA MER1_type 82 195 -328 2811 128 29 18 chr3 185708922 185709375 -32327783 + LTR22A LTR ERVK 1 458 0 3031 120 20 5 chr3 185709377 185710231 -32326927 + HERVK22 LTR ERVK 3 905 -5932 709 113 47 0 chr3 185710236 185710342 -32326816 + HERVK22 LTR ERVK 6727 6837 0 2918 127 11 20 chr3 185710345 185710801 -32326357 + LTR22A LTR ERVK 7 458 0 657 114 24 121 chr3 185710801 185710964 -32326194 + Charlie1b DNA MER1_type 200 346 -177 1863 161 3 0 chr3 185712220 185712511 -32324647 - AluJb SINE Alu -20 292 1 2870 120 24 0 chr3 185713095 185713521 -32323637 - L1PA14 LINE L1 -10 6151 5716 825 128 372 0 chr3 185713919 185714091 -32323067 + MER46A DNA MER2_type 1 236 0 1941 153 10 7 chr3 185714098 185714405 -32322753 - AluJo SINE Alu -4 308 1 198 91 0 0 chr3 185714484 185714517 -32322641 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 699 200 119 27 chr3 185717198 185717383 -32319775 - MER20 DNA MER1_type -1 218 17 322 228 163 0 chr3 185717662 185717785 -32319373 + MER112 DNA MER1_type 107 249 -11 813 258 59 39 chr3 185717814 185718070 -32319088 - MIR SINE MIR 0 262 2 22 0 0 0 chr3 185718143 185718165 -32318993 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr3 185719146 185719181 -32317977 + AT_rich Low_complexity Low_complexity 1 35 0 2036 136 7 3 chr3 185720394 185720695 -32316463 + AluSx SINE Alu 1 302 -10 2326 94 10 0 chr3 185721148 185721455 -32315703 + AluSq SINE Alu 4 313 0 188 263 0 0 chr3 185721719 185721757 -32315401 - L3 LINE CR1 -33 1544 1507 235 196 39 0 chr3 185722173 185722224 -32314934 - MIR3 SINE MIR -6 202 150 2331 110 0 0 chr3 185723509 185723810 -32313348 - AluSx SINE Alu -11 301 1 1058 174 13 61 chr3 185727854 185728084 -32309074 - MER20 DNA MER1_type 0 219 1 1311 203 29 61 chr3 185735152 185735280 -32301878 - MER58B DNA MER1_type -2082 338 207 1738 158 0 55 chr3 185735280 185735608 -32301550 + AluJb SINE Alu 1 310 -2 1311 203 29 61 chr3 185735608 185735824 -32301334 - MER58B DNA MER1_type -2213 207 5 853 126 0 8 chr3 185735959 185736078 -32301080 - FLAM_C SINE Alu -20 123 6 941 163 69 0 chr3 185737025 185737227 -32299931 - L1MA4 LINE L1 -1 6299 6084 2062 109 0 0 chr3 185737440 185737716 -32299442 + AluSx SINE Alu 1 276 -36 189 74 0 0 chr3 185737725 185737752 -32299406 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr3 185738729 185738750 -32298408 + AT_rich Low_complexity Low_complexity 1 21 0 494 167 0 0 chr3 185739010 185739088 -32298070 + FLAM_A SINE Alu 38 115 -27 280 314 29 0 chr3 185739380 185739482 -32297676 + MIR SINE MIR 89 193 -69 517 282 174 16 chr3 185740686 185741067 -32296091 + MLT1J LTR MaLR 1 473 -38 393 257 146 9 chr3 185742558 185742784 -32294374 + L1MC5 LINE L1 7538 7794 -167 786 111 17 29 chr3 185742784 185742956 -32294202 + (GGAA)n Simple_repeat Simple_repeat 2 171 0 230 286 0 0 chr3 185742956 185743012 -32294146 + GA-rich Low_complexity Low_complexity 4 59 0 283 284 28 55 chr3 185743313 185743422 -32293736 + L2 LINE L2 3208 3313 0 2186 92 0 46 chr3 185743730 185744033 -32293125 - AluSc SINE Alu -20 289 1 2364 100 0 0 chr3 185744035 185744334 -32292824 - AluSx SINE Alu -13 299 1 451 193 5 80 chr3 185745619 185745806 -32291352 - AluSp SINE Alu -82 221 49 211 211 0 0 chr3 185746010 185746062 -32291096 + T-rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr3 185746133 185746155 -32291003 + AT_rich Low_complexity Low_complexity 1 22 0 1863 118 49 3 chr3 185746270 185746557 -32290601 - AluSx SINE Alu -12 300 1 381 169 0 0 chr3 185748103 185748162 -32288996 - MER3 DNA MER1_type -150 59 1 1583 181 39 42 chr3 185748177 185748479 -32288679 + MER58B DNA MER1_type 1 302 -2118 2334 77 0 7 chr3 185748479 185748779 -32288379 - AluY SINE Alu -13 298 1 2122 126 0 19 chr3 185748779 185749089 -32288069 - AluSx SINE Alu -8 304 1 1583 181 39 42 chr3 185749089 185749117 -32288041 + MER58B DNA MER1_type 300 331 -10 1489 168 84 21 chr3 185750094 185750379 -32286779 - AluJb SINE Alu -9 303 1 1928 149 3 19 chr3 185750428 185750743 -32286415 - AluSx SINE Alu -2 310 1 1748 128 0 4 chr3 185751079 185751321 -32285837 - AluSq SINE Alu -72 241 1 211 203 159 0 chr3 185751346 185751415 -32285743 + MIR SINE MIR 137 216 -46 857 190 11 38 chr3 185751422 185751606 -32285552 - FAM SINE Alu -1 48 1 1723 128 3 51 chr3 185751833 185752129 -32285029 - AluSx SINE Alu -30 282 1 1079 174 0 0 chr3 185752171 185752343 -32284815 - AluSg/x SINE Alu -12 300 129 188 313 0 0 chr3 185752436 185752468 -32284690 + C-rich Low_complexity Low_complexity 1 32 0 1973 98 13 36 chr3 185752602 185752907 -32284251 + AluSq SINE Alu 1 298 -15 277 281 37 12 chr3 185753239 185753321 -32283837 + MIR SINE MIR 8 91 -171 660 299 176 6 chr3 185753395 185753856 -32283302 + L2 LINE L2 2526 3133 -180 2181 125 0 6 chr3 185754683 185754995 -32282163 - AluSx SINE Alu -2 310 1 299 274 0 88 chr3 185755023 185755077 -32282081 - MER5A DNA MER1_type -83 106 66 2462 68 3 3 chr3 185755077 185755388 -32281770 - AluY SINE Alu 0 311 1 299 274 0 88 chr3 185755388 185755446 -32281712 - MER5A DNA MER1_type -123 66 4 271 192 173 0 chr3 185755451 185755503 -32281655 - MIR3 SINE MIR -49 159 99 22 35 0 0 chr3 185755832 185755861 -32281297 + AT_rich Low_complexity Low_complexity 1 29 0 2162 107 6 35 chr3 185755995 185756312 -32280846 + AluY SINE Alu 1 308 -3 850 204 0 0 chr3 185756323 185756485 -32280673 + AluJb SINE Alu 136 297 -15 2202 131 0 0 chr3 185756608 185756906 -32280252 - AluSx SINE Alu -12 300 3 31 68 0 0 chr3 185756917 185756976 -32280182 + AT_rich Low_complexity Low_complexity 1 59 0 267 265 96 0 chr3 185757693 185757776 -32279382 + MIR3 SINE MIR 100 190 -18 1493 191 54 125 chr3 185758087 185758997 -32278161 + L1MB7 LINE L1 4860 5691 -765 628 108 0 0 chr3 185758999 185759092 -32278066 - AluSp/q SINE Alu -10 303 211 2068 140 0 0 chr3 185759132 185759425 -32277733 + AluSx SINE Alu 3 295 -17 1921 187 16 20 chr3 185759426 185759865 -32277293 + L1MB7 LINE L1 5717 6153 -31 2414 60 10 0 chr3 185759865 185760166 -32276992 - AluY SINE Alu -7 304 1 2448 73 0 10 chr3 185760184 185760526 -32276632 - AluY SINE Alu 0 339 1 420 225 11 11 chr3 185760739 185760828 -32276330 + MIR SINE MIR 61 149 -113 2896 172 33 19 chr3 185760833 185761421 -32275737 - Tigger7 DNA MER2_type 0 2487 4 243 0 0 0 chr3 185761532 185761559 -32275599 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2068 104 0 7 chr3 185761561 185761848 -32275310 - AluSx SINE Alu -27 285 1 10235 190 18 49 chr3 185762008 185763031 -32274127 - L1 LINE L1 -1640 4506 3453 1676 167 7 4 chr3 185763031 185763306 -32273852 - AluJb SINE Alu -36 276 1 10235 190 18 49 chr3 185763306 185764484 -32272674 - L1 LINE L1 -2693 3453 2240 1555 208 0 7 chr3 185764484 185764778 -32272380 - AluJo SINE Alu -20 292 1 10235 190 18 49 chr3 185764778 185765025 -32272133 - L1 LINE L1 -3906 2240 1987 1718 158 16 43 chr3 185765025 185765154 -32272004 + AluJb SINE Alu 1 132 -180 333 0 0 0 chr3 185765154 185765191 -32271967 + (CA)n Simple_repeat Simple_repeat 2 38 0 1718 158 16 43 chr3 185765191 185765365 -32271793 + AluJb SINE Alu 132 296 -16 1994 109 7 0 chr3 185765373 185765648 -32271510 + AluSc SINE Alu 14 290 -19 10235 190 18 49 chr3 185765648 185765932 -32271226 - L1 LINE L1 -4166 1980 1689 1577 150 98 4 chr3 185765932 185766198 -32270960 + AluJb SINE Alu 1 291 -21 2298 80 3 0 chr3 185766207 185766496 -32270662 + AluY SINE Alu 1 290 -21 2145 105 4 0 chr3 185766501 185766804 -32270354 + AluSg SINE Alu 2 305 0 10235 190 18 49 chr3 185766804 185766883 -32270275 - L1 LINE L1 -4278 1868 1788 272 220 0 0 chr3 185766939 185766989 -32270169 + AluJ/monomer SINE Alu 1 50 -253 769 207 18 24 chr3 185767053 185767217 -32269941 - FRAM SINE Alu -13 163 1 2203 112 3 3 chr3 185767223 185767527 -32269631 - AluSg SINE Alu -6 304 1 1959 138 17 0 chr3 185767537 185767826 -32269332 - AluSx SINE Alu -16 296 3 2238 97 3 0 chr3 185767882 185768171 -32268987 - AluSg SINE Alu -20 290 1 386 267 115 37 chr3 185768362 185768553 -32268605 + L1MC4a LINE L1 5727 5932 -1876 374 322 88 19 chr3 185769089 185769294 -32267864 + L1ME4a LINE L1 5619 5837 -284 292 286 130 13 chr3 185769382 185769536 -32267622 + L1MC4 LINE L1 7496 7667 -375 466 95 63 0 chr3 185769581 185769644 -32267514 + Alu SINE Alu 223 289 -21 1773 108 4 22 chr3 185769645 185769913 -32267245 + AluSg SINE Alu 48 310 0 1783 197 0 0 chr3 185769921 185770231 -32266927 + AluJb SINE Alu 1 310 -2 2460 66 0 3 chr3 185770246 185770551 -32266607 + AluY SINE Alu 1 304 -7 424 264 115 95 chr3 185770553 185771293 -32265865 + HAL1 LINE L1 968 1722 -785 2000 132 0 20 chr3 185771895 185772198 -32264960 + AluSx SINE Alu 1 297 -15 389 153 17 0 chr3 185772212 185772271 -32264887 + U7 snRNA snRNA 2 61 -2 236 204 0 0 chr3 185772344 185772388 -32264770 - L2 LINE L2 -6 3307 3264 283 185 37 0 chr3 185772579 185772633 -32264525 - MLT1A2 LTR MaLR 0 374 319 2168 120 45 3 chr3 185772633 185772942 -32264216 - MER1B DNA MER1_type 0 339 18 1323 197 82 16 chr3 185772950 185773255 -32263903 - MLT1A2 LTR MaLR -49 325 1 325 298 133 26 chr3 185773302 185773453 -32263705 - MIR3 SINE MIR -30 178 12 1352 236 205 48 chr3 185773545 185774456 -32262702 + L2 LINE L2 2255 3313 0 351 0 0 0 chr3 185774738 185774777 -32262381 + (TG)n Simple_repeat Simple_repeat 1 39 0 2366 92 3 0 chr3 185774854 185775157 -32262001 + AluSx SINE Alu 2 305 -7 1714 172 23 10 chr3 185775190 185775498 -32261660 + AluJo SINE Alu 1 312 0 2624 216 75 57 chr3 185775775 185776742 -32260416 + L1MDa LINE L1 17 965 -5575 2295 119 0 3 chr3 185776742 185777053 -32260105 + AluSx SINE Alu 1 310 -2 2624 216 75 57 chr3 185777053 185777093 -32260065 + L1MDa LINE L1 965 1003 -5537 577 254 8 16 chr3 185777093 185777215 -32259943 + FLAM_A SINE Alu 1 121 -12 2624 216 75 57 chr3 185777215 185777315 -32259843 + L1MDa LINE L1 1003 1100 -5440 2221 123 3 0 chr3 185777315 185777617 -32259541 - AluSx SINE Alu -9 303 1 2624 216 75 57 chr3 185777617 185777660 -32259498 + L1MDa LINE L1 1100 1349 -5191 836 264 63 74 chr3 185777682 185777949 -32259209 - L1MC4a LINE L1 -302 5819 5627 1694 167 37 0 chr3 185777949 185778218 -32258940 - AluJo SINE Alu -23 289 11 836 264 63 74 chr3 185778218 185778418 -32258740 - L1MC4a LINE L1 -494 5627 5426 279 187 0 0 chr3 185778427 185778493 -32258665 - Alu SINE Alu -8 294 251 643 130 0 0 chr3 185779813 185779905 -32257253 + AluSg/x SINE Alu 209 300 -10 2230 72 7 10 chr3 185779950 185780240 -32256918 - AluSc SINE Alu -20 289 1 1666 133 76 8 chr3 185780487 185780751 -32256407 - AluJb SINE Alu -24 288 7 216 0 0 0 chr3 185781000 185781024 -32256134 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2065 121 3 3 chr3 185782645 185782935 -32254223 - AluSx SINE Alu -22 290 1 2907 165 59 75 chr3 185782936 185783042 -32254116 - L1M4b LINE L1 -5186 1673 1567 2164 124 0 10 chr3 185783042 185783349 -32253809 - AluSg SINE Alu -6 304 1 2907 165 59 75 chr3 185783349 185783751 -32253407 - L1M4b LINE L1 -5292 1567 1176 2432 60 7 13 chr3 185783751 185784050 -32253108 - AluY SINE Alu -10 301 5 2907 165 59 75 chr3 185784050 185784231 -32252927 - L1M4b LINE L1 -5683 1176 994 346 247 47 0 chr3 185784237 185784322 -32252836 - L1M4b LINE L1 -6761 98 10 2505 68 7 0 chr3 185784513 185784821 -32252337 + AluY SINE Alu 1 310 -1 251 0 59 0 chr3 185785513 185785547 -32251611 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2014 121 0 0 chr3 185785549 185785830 -32251328 - AluSx SINE Alu -31 281 1 2223 114 7 0 chr3 185785838 185786144 -32251014 - AluSp SINE Alu -5 308 1 1629 177 3 108 chr3 185786159 185786548 -32250610 - MER7A DNA MER2_type 0 346 1 2008 112 3 7 chr3 185786979 185787288 -32249870 - AluSx SINE Alu 0 308 1 23 33 0 0 chr3 185787298 185787328 -32249830 + AT_rich Low_complexity Low_complexity 1 30 0 2294 103 7 0 chr3 185787623 185787924 -32249234 - AluSq SINE Alu -10 303 1 205 205 26 0 chr3 185787992 185788031 -32249127 + L2 LINE L2 3264 3303 -10 198 245 49 88 chr3 185788054 185788156 -32249002 + MIR SINE MIR 121 218 -44 1821 147 0 67 chr3 185788156 185788290 -32248868 + AluJb SINE Alu 1 142 -170 2443 74 3 0 chr3 185788290 185788599 -32248559 + AluY SINE Alu 1 310 -1 1821 147 0 67 chr3 185788599 185788776 -32248382 + AluJb SINE Alu 142 291 -21 338 222 49 12 chr3 185788780 185788861 -32248297 - L1M4 LINE L1 -2032 4114 4031 1713 164 13 59 chr3 185789349 185789654 -32247504 - AluJb SINE Alu -21 291 1 624 246 264 0 chr3 185789654 185789934 -32247224 - L2 LINE L2 -13 3300 2947 269 119 136 0 chr3 185790427 185790486 -32246672 - L1MA8 LINE L1 -4 6287 6221 745 163 7 44 chr3 185790491 185790626 -32246532 + FLAM_C SINE Alu 6 135 -8 2188 108 10 0 chr3 185790629 185790934 -32246224 + AluSx SINE Alu 1 308 -4 377 290 59 54 chr3 185790934 185791120 -32246038 + L1MC4a LINE L1 5694 5880 -1928 2122 132 0 0 chr3 185791144 185791439 -32245719 - AluSx SINE Alu -17 295 1 1198 99 0 6 chr3 185791977 185792138 -32245020 - L1PB1 LINE L1 0 6151 5992 2114 106 6 50 chr3 185792629 185792949 -32244209 - AluSc SINE Alu -3 306 1 22 35 0 0 chr3 185793083 185793112 -32244046 + AT_rich Low_complexity Low_complexity 1 29 0 268 192 173 0 chr3 185793441 185793493 -32243665 + MIR3 SINE MIR 99 159 -49 289 274 0 88 chr3 185793498 185793556 -32243602 + MER5A DNA MER1_type 4 49 -140 2512 64 3 3 chr3 185793556 185793867 -32243291 + AluY SINE Alu 1 311 0 289 274 0 88 chr3 185793867 185793921 -32243237 + MER5A DNA MER1_type 49 106 -83 2161 125 0 10 chr3 185793949 185794262 -32242896 + AluSx SINE Alu 1 310 -2 1543 116 23 148 chr3 185795205 185795401 -32241757 - AluJb SINE Alu 0 312 176 1460 147 0 0 chr3 185795401 185795626 -32241532 - AluSc SINE Alu -3 306 82 1543 116 23 148 chr3 185795626 185795774 -32241384 - AluJb SINE Alu -136 176 11 1901 122 14 10 chr3 185796337 185796632 -32240526 - AluSq SINE Alu -13 300 5 695 82 0 0 chr3 185796634 185796719 -32240439 - AluY SINE Alu -175 136 52 724 241 227 23 chr3 185796835 185797281 -32239877 + L2 LINE L2 2708 3312 -1 270 228 174 60 chr3 185797279 185797428 -32239730 + MIR SINE MIR 97 262 0 * 2007 121 7 3 chr3 185797655 185797952 -32239206 + AluSg SINE Alu 1 298 -12 522 228 18 26 chr3 185798155 185798269 -32238889 + FRAM SINE Alu 51 163 -13 269 220 0 0 chr3 185798333 185798383 -32238775 - AluY SINE Alu -250 50 1 10649 190 18 49 chr3 185798439 185798518 -32238640 + L1 LINE L1 1788 1868 -4278 216 0 0 0 chr3 185798518 185798542 -32238616 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2142 105 4 0 chr3 185798544 185798821 -32238337 - AluSg SINE Alu -31 279 2 2313 80 3 0 chr3 185798826 185799115 -32238043 - AluY SINE Alu -21 290 1 1587 150 98 4 chr3 185799124 185799390 -32237768 - AluJb SINE Alu -21 291 1 10649 190 18 49 chr3 185799390 185799674 -32237484 + L1 LINE L1 1881 2172 -3974 2011 110 4 0 chr3 185799674 185799946 -32237212 - AluSc SINE Alu -19 290 18 10649 190 18 49 chr3 185799946 185799957 -32237201 + L1 LINE L1 2172 2182 -3964 1729 164 10 36 chr3 185799957 185800131 -32237027 - AluJb SINE Alu -16 296 132 333 0 0 0 chr3 185800131 185800168 -32236990 + (TG)n Simple_repeat Simple_repeat 2 38 0 1729 164 10 36 chr3 185800168 185800297 -32236861 - AluJb SINE Alu -180 132 1 10649 190 18 49 chr3 185800297 185800544 -32236614 + L1 LINE L1 2182 2435 -3711 1585 208 0 3 chr3 185800544 185800837 -32236321 + AluJo SINE Alu 1 292 -20 10649 190 18 49 chr3 185800837 185802015 -32235143 + L1 LINE L1 2435 3453 -2693 1673 167 7 4 chr3 185802015 185802290 -32234868 + AluJb SINE Alu 1 276 -36 10649 190 18 49 chr3 185802290 185803313 -32233845 + L1 LINE L1 3453 4506 -1640 2079 104 0 7 chr3 185803473 185803789 -32233369 + AluSx SINE Alu 1 314 0 2931 173 33 19 chr3 185803900 185804488 -32232670 + Tigger7 DNA MER2_type 4 2487 0 422 225 11 11 chr3 185804493 185804582 -32232576 - MIR SINE MIR -113 149 61 2534 50 0 22 chr3 185804795 185805113 -32232045 + AluY SINE Alu 1 311 0 2435 60 10 0 chr3 185805140 185805441 -32231717 + AluY SINE Alu 1 304 -7 2151 188 37 102 chr3 185805441 185805867 -32231291 - L1MB7 LINE L1 -21 6159 5707 2092 149 0 0 chr3 185805867 185806176 -32230982 - AluSx SINE Alu -3 309 1 2151 188 37 102 chr3 185806176 185806214 -32230944 - L1MB7 LINE L1 -473 5707 5668 680 108 0 0 chr3 185806214 185806307 -32230851 + AluSp/q SINE Alu 211 303 -10 2151 188 37 102 chr3 185806307 185807219 -32229939 - L1MB7 LINE L1 -512 5668 4860 262 265 96 0 chr3 185807530 185807613 -32229545 - MIR3 SINE MIR -18 190 100 31 68 0 0 chr3 185808329 185808388 -32228770 + AT_rich Low_complexity Low_complexity 1 59 0 2376 106 0 3 chr3 185808399 185808710 -32228448 + AluSx SINE Alu 3 312 0 1491 142 109 8 chr3 185809827 185810094 -32227064 - AluJb SINE Alu -18 294 1 652 165 91 25 chr3 185810518 185810639 -32226519 + FLAM_C SINE Alu 5 133 0 2156 103 7 3 chr3 185810798 185811100 -32226058 - AluY SINE Alu -4 307 5 2069 76 65 4 chr3 185811104 185811380 -32225778 - AluSq SINE Alu -20 293 1 1252 182 49 8 chr3 185811512 185811759 -32225399 + AluJo SINE Alu 40 296 -16 22 70 0 0 chr3 185811781 185811824 -32225334 + AT_rich Low_complexity Low_complexity 1 43 0 1536 159 69 22 chr3 185811824 185812101 -32225057 - AluJo SINE Alu -22 290 1 195 250 19 19 chr3 185812985 185813037 -32224121 - MER5A DNA MER1_type -95 94 43 * 204 347 13 13 chr3 185812993 185813068 -32224090 + MER5A DNA MER1_type 115 189 0 23 0 0 0 chr3 185813488 185813511 -32223647 + AT_rich Low_complexity Low_complexity 1 23 0 1860 133 54 11 chr3 185814261 185814540 -32222618 - AluSx SINE Alu -21 291 1 220 327 108 43 chr3 185816306 185816704 -32220454 - L2 LINE L2 -463 2851 2428 436 273 150 37 chr3 185816879 185817066 -32220092 - MIR SINE MIR -49 213 6 284 364 23 29 chr3 185817203 185817376 -32219782 - L2 LINE L2 -1078 2236 2065 180 0 0 0 chr3 185817548 185817568 -32219590 + (A)n Simple_repeat Simple_repeat 1 20 0 198 320 77 33 chr3 185818019 185818200 -32218958 - L2 LINE L2 -1915 1399 1211 508 187 82 37 chr3 185818283 185818417 -32218741 + L1ME LINE L1 5530 5669 -452 803 211 111 16 chr3 185818445 185818635 -32218523 + MIR SINE MIR 1 208 -54 2096 110 3 3 chr3 185818725 185819007 -32218151 + AluSx SINE Alu 1 318 0 231 28 0 56 chr3 185819007 185819043 -32218115 + (TAAAA)n Simple_repeat Simple_repeat 2 180 0 1357 182 51 47 chr3 185819411 185819546 -32217612 + AluJo SINE Alu 1 134 -178 2236 112 0 3 chr3 185819546 185819849 -32217309 + AluSx SINE Alu 1 302 -10 1357 182 51 47 chr3 185819849 185820009 -32217149 + AluJo SINE Alu 134 297 -15 2350 94 10 7 chr3 185820079 185820386 -32216772 + AluSx SINE Alu 1 308 -4 2070 126 10 13 chr3 185820496 185820805 -32216353 + AluSx SINE Alu 1 308 -4 1770 148 10 52 chr3 185822393 185822556 -32214602 - AluJb SINE Alu -14 298 153 2121 120 3 26 chr3 185822556 185822864 -32214294 - AluSx SINE Alu -10 302 2 1770 148 10 52 chr3 185822864 185823010 -32214148 - AluJb SINE Alu -159 153 2 2152 116 7 7 chr3 185823020 185823322 -32213836 - AluSq SINE Alu -9 304 3 552 178 47 0 chr3 185823504 185823611 -32213547 + MIR SINE MIR 107 218 -44 815 273 32 17 chr3 185823615 185823883 -32213275 - L1ME LINE L1 -564 5606 5327 1929 125 0 86 chr3 185824270 185824607 -32212551 + AluSx SINE Alu 1 308 -4 22 0 0 0 chr3 185825058 185825080 -32212078 + AT_rich Low_complexity Low_complexity 1 22 0 2478 70 0 0 chr3 185825194 185825492 -32211666 - AluY SINE Alu -13 298 1 990 52 0 0 chr3 185825527 185825642 -32211516 - AluY SINE Alu -14 297 183 798 183 14 0 chr3 185825933 185826075 -32211083 + MIR SINE MIR 86 229 -33 2142 116 7 0 chr3 185826553 185826837 -32210321 - AluSx SINE Alu -25 287 2 26 74 0 0 chr3 185826939 185826993 -32210165 + AT_rich Low_complexity Low_complexity 1 54 0 2152 106 14 3 chr3 185827104 185827396 -32209762 - AluSp SINE Alu -18 295 1 274 324 14 0 chr3 185827469 185827608 -32209550 + L1M4 LINE L1 2403 2543 -3603 255 219 31 0 chr3 185827703 185827767 -32209391 + (TA)n Simple_repeat Simple_repeat 2 67 0 323 281 115 0 chr3 185827820 185827959 -32209199 + L1M4 LINE L1 2676 2830 -3316 2084 120 3 13 chr3 185828165 185828325 -32208833 - AluSx SINE Alu -16 296 139 2286 98 7 0 chr3 185828325 185828621 -32208537 - AluSx SINE Alu -14 298 1 2084 120 3 13 chr3 185828621 185828759 -32208399 - AluSx SINE Alu -173 139 1 24 0 0 0 chr3 185829460 185829484 -32207674 + AT_rich Low_complexity Low_complexity 1 24 0 1986 122 0 27 chr3 185829491 185829785 -32207373 - AluSx SINE Alu -26 286 1 2447 54 3 3 chr3 185829993 185830287 -32206871 - AluY SINE Alu -17 294 1 2129 127 13 7 chr3 185830316 185830623 -32206535 - AluSx SINE Alu -3 309 1 22 56 0 0 chr3 185830665 185830701 -32206457 + AT_rich Low_complexity Low_complexity 1 36 0 233 221 15 0 chr3 185830872 185830926 -32206232 + (TA)n Simple_repeat Simple_repeat 2 59 -11 1605 156 49 4 chr3 185830926 185831189 -32205969 - AluJb SINE Alu -27 285 11 233 221 15 0 chr3 185831189 185831202 -32205956 + (TA)n Simple_repeat Simple_repeat 59 70 0 440 148 0 37 chr3 185831370 185831451 -32205707 + FLAM_A SINE Alu 65 142 0 376 324 87 46 chr3 185831497 185831843 -32205315 - L1ME LINE L1 -408 5713 5354 2544 68 0 13 chr3 185832025 185832335 -32204823 + AluSq SINE Alu 1 306 -7 1173 121 6 0 chr3 185832337 185832502 -32204656 + AluSg/x SINE Alu 128 293 -17 2482 72 0 0 chr3 185832873 185833177 -32203981 + AluY SINE Alu 1 304 -7 23 0 0 0 chr3 185833240 185833263 -32203895 + AT_rich Low_complexity Low_complexity 1 23 0 2441 71 0 3 chr3 185835128 185835424 -32201734 - AluSc SINE Alu -14 295 1 2433 81 0 0 chr3 185835536 185835834 -32201324 - AluSx SINE Alu -14 298 1 222 221 13 39 chr3 185836059 185836136 -32201022 + (TATATG)n Simple_repeat Simple_repeat 2 76 0 2292 100 0 7 chr3 185837499 185837799 -32199359 + AluSq SINE Alu 1 298 -15 1579 177 3 14 chr3 185838918 185839201 -32197957 + AluJb SINE Alu 1 280 -32 195 42 0 0 chr3 185839201 185839225 -32197933 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1437 158 251 22 chr3 185839244 185839567 -32197591 + MSTB LTR MaLR 5 401 -25 1731 157 27 14 chr3 185839578 185839871 -32197287 - AluJo SINE Alu -15 297 1 254 150 0 0 chr3 185839872 185839912 -32197246 + MSTB LTR MaLR 393 432 0 539 314 26 11 chr3 185840112 185840376 -32196782 + L1MEc LINE L1 1548 1815 -4581 1825 136 42 0 chr3 185840534 185840820 -32196338 - AluY SINE Alu -9 302 5 1640 169 65 30 chr3 185840823 185840982 -32196176 - L1P4 LINE L1 -681 5485 5333 1821 156 10 36 chr3 185840982 185841289 -32195869 - AluSx SINE Alu -13 299 1 1640 169 65 30 chr3 185841289 185841626 -32195532 - L1P4 LINE L1 -833 5333 4975 803 199 99 0 chr3 185841642 185841793 -32195365 + AluJb SINE Alu 144 309 -3 305 259 86 22 chr3 185841870 185842009 -32195149 + L1MC5 LINE L1 7765 7912 -49 1887 169 0 16 chr3 185842009 185842316 -32194842 + AluJo SINE Alu 1 302 -10 21 0 0 0 chr3 185843039 185843060 -32194098 + AT_rich Low_complexity Low_complexity 1 21 0 2224 116 0 7 chr3 185843814 185844115 -32193043 + AluSx SINE Alu 1 299 -13 932 127 0 22 chr3 185844264 185844398 -32192760 - FLAM_C SINE Alu -2 131 1 2314 117 0 0 chr3 185844408 185844715 -32192443 - AluSx SINE Alu -5 307 1 273 208 19 0 chr3 185845965 185846018 -32191140 - MER66B LTR ERV1 -141 345 292 2224 120 0 3 chr3 185846113 185846413 -32190745 + AluSx SINE Alu 1 299 -13 1442 204 136 72 chr3 185846426 185847094 -32190064 + L1MC5 LINE L1 7244 7954 -7 351 229 112 39 chr3 185847063 185847242 -32189916 + L1ME4a LINE L1 5930 6121 0 * 22 0 0 0 chr3 185847242 185847264 -32189894 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr3 185847651 185847673 -32189485 + (A)n Simple_repeat Simple_repeat 1 22 0 204 40 0 0 chr3 185847937 185847962 -32189196 + (CAAAAA)n Simple_repeat Simple_repeat 5 29 0 2381 108 0 3 chr3 185848261 185848575 -32188583 - AluSp SINE Alu 0 313 1 1465 158 72 24 chr3 185848579 185848870 -32188288 - AluJb SINE Alu -7 305 1 1902 146 0 0 chr3 185849035 185849316 -32187842 + AluSx SINE Alu 1 281 -31 190 56 56 0 chr3 185849319 185849355 -32187803 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1000 229 40 9 chr3 185849357 185849584 -32187574 + MIR SINE MIR 29 262 0 23 33 0 0 chr3 185849624 185849654 -32187504 + AT_rich Low_complexity Low_complexity 1 30 0 301 182 182 73 chr3 185849729 185849753 -32187405 + MER94 DNA DNA 13 33 -101 2064 141 3 0 chr3 185849753 185850051 -32187107 - AluSx SINE Alu -13 299 1 301 182 182 73 chr3 185850051 185850136 -32187022 + MER94 DNA DNA 33 134 0 2281 109 3 0 chr3 185850554 185850858 -32186300 - AluSx SINE Alu -7 305 1 1311 255 64 86 chr3 185850894 185851247 -32185911 - L1MC4 LINE L1 0 8042 7683 2087 137 0 0 chr3 185851247 185851539 -32185619 - AluSx SINE Alu -20 292 1 1311 255 64 86 chr3 185851539 185852039 -32185119 - L1MC4 LINE L1 -359 7683 7207 1978 93 35 52 chr3 185852329 185852639 -32184519 + AluY SINE Alu 1 305 -6 760 206 39 22 chr3 185852933 185853040 -32184118 - MER5A DNA MER1_type -2 187 74 2270 118 0 10 chr3 185853040 185853346 -32183812 - AluSx SINE Alu -9 303 1 760 206 39 22 chr3 185853346 185853418 -32183740 - MER5A DNA MER1_type -115 74 5 247 307 79 43 chr3 185853405 185853545 -32183613 + MER5B DNA MER1_type 34 178 0 * 2036 140 3 0 chr3 185853671 185853971 -32183187 + AluSx SINE Alu 1 301 -11 371 225 36 51 chr3 185854115 185854253 -32182905 + L1MC4 LINE L1 7902 8037 -5 1653 168 28 14 chr3 185854430 185854721 -32182437 - AluJo SINE Alu -8 304 10 2583 37 3 0 chr3 185855068 185855363 -32181795 - AluY SINE Alu -15 296 1 234 91 0 0 chr3 185855401 185855434 -32181724 + (A)n Simple_repeat Simple_repeat 1 33 0 1770 163 19 13 chr3 185855473 185855780 -32181378 + AluSx SINE Alu 1 309 -3 2123 125 3 0 chr3 185856468 185856765 -32180393 + AluSq SINE Alu 1 298 -15 26 0 0 0 chr3 185856776 185856802 -32180356 + AT_rich Low_complexity Low_complexity 1 26 0 1741 166 0 32 chr3 185856987 185857300 -32179858 + AluJb SINE Alu 1 303 -9 230 224 96 72 chr3 185857322 185857447 -32179711 + MIR SINE MIR 7 134 -128 1974 121 39 0 chr3 185857499 185857779 -32179379 + AluSx SINE Alu 1 291 -21 22 35 0 0 chr3 185858412 185858441 -32178717 + AT_rich Low_complexity Low_complexity 1 29 0 2258 84 11 0 chr3 185858441 185858725 -32178433 - AluSq SINE Alu -26 287 1 958 82 44 0 chr3 185858726 185858861 -32178297 + MER41A LTR ERV1 414 554 0 2151 139 20 21 chr3 185858966 185859093 -32178065 + MER41A-int LTR ERV1 1 127 -5819 1898 70 8 4 chr3 185859093 185859336 -32177822 + AluSc SINE Alu 54 297 -12 2151 139 20 21 chr3 185859336 185859670 -32177488 + MER41A-int LTR ERV1 127 556 -5390 2261 98 3 3 chr3 185859917 185860214 -32176944 - AluSx SINE Alu -15 297 1 296 339 69 29 chr3 185860289 185860463 -32176695 + MIR SINE MIR 14 194 -68 2268 89 0 3 chr3 185860591 185860882 -32176276 - AluSx SINE Alu -20 292 3 1986 134 3 3 chr3 185861113 185861419 -32175739 - AluSx SINE Alu -6 306 1 1179 161 5 0 chr3 185861848 185862034 -32175124 - AluJb SINE Alu -125 187 1 222 37 0 0 chr3 185862546 185862573 -32174585 + (TTA)n Simple_repeat Simple_repeat 2 28 0 706 153 51 0 chr3 185862577 185862695 -32174463 - FLAM_C SINE Alu -5 128 5 21 0 0 0 chr3 185862940 185862961 -32174197 + GC_rich Low_complexity Low_complexity 1 21 0 1432 183 39 23 chr3 185864230 185864536 -32172622 - AluJo SINE Alu -1 311 1 201 167 0 0 chr3 185864541 185864577 -32172581 + T-rich Low_complexity Low_complexity 1 36 0 186 43 0 0 chr3 185865848 185865871 -32171287 + (CCA)n Simple_repeat Simple_repeat 3 25 0 1406 213 136 14 chr3 185866064 185866280 -32170878 - MSTD LTR MaLR 0 396 208 2464 28 41 0 chr3 185866280 185866570 -32170588 + AluY SINE Alu 1 302 -9 1406 213 136 14 chr3 185866570 185866706 -32170452 - MSTD LTR MaLR -188 208 1 2120 145 0 0 chr3 185866740 185867044 -32170114 + AluJb SINE Alu 1 304 -8 2097 126 0 0 chr3 185867045 185867331 -32169827 + AluSq SINE Alu 2 287 -26 295 352 66 53 chr3 185867725 185867952 -32169206 + MIR SINE MIR 20 249 -13 584 276 27 16 chr3 185867952 185868137 -32169021 - MIR SINE MIR 0 262 76 2273 117 0 0 chr3 185868465 185868765 -32168393 - AluSg SINE Alu -10 300 1 2332 80 0 7 chr3 185868768 185869068 -32168090 - AluSc SINE Alu -11 298 1 1383 173 107 7 chr3 185869074 185869346 -32167812 - AluJo SINE Alu -13 299 1 23 0 0 0 chr3 185870424 185870447 -32166711 + AT_rich Low_complexity Low_complexity 1 23 0 2053 142 0 13 chr3 185870485 185870801 -32166357 - AluSx SINE Alu 0 312 1 270 255 59 20 chr3 185870810 185870912 -32166246 - HAL1b LINE L1 -2 6119 1253 790 184 34 45 chr3 185871039 185871218 -32165940 - MER3 DNA MER1_type -2 207 31 338 277 69 8 chr3 185871358 185871488 -32165670 - L1MC/D LINE L1 -2330 5478 5341 2228 88 0 16 chr3 185871495 185871802 -32165356 - AluSc SINE Alu -7 302 1 26 74 0 0 chr3 185872449 185872503 -32164655 + AT_rich Low_complexity Low_complexity 1 54 0 944 215 117 31 chr3 185873923 185874229 -32162929 - L1MC4 LINE L1 0 8042 7705 828 185 133 46 chr3 185874229 185874424 -32162734 - MER20 DNA MER1_type -3 216 5 944 215 117 31 chr3 185874424 185874442 -32162716 - L1MC4 LINE L1 -337 7705 7690 1013 195 72 18 chr3 185875589 185875810 -32161348 + MER46A DNA MER2_type 3 235 -1 2346 62 38 0 chr3 185875936 185876228 -32160930 - AluY SINE Alu -8 303 1 189 111 0 74 chr3 185876504 185876558 -32160600 + (TTTCC)n Simple_repeat Simple_repeat 3 52 0 1511 158 25 42 chr3 185876558 185876843 -32160315 - AluJo SINE Alu -32 280 1 2168 125 0 0 chr3 185876936 185877233 -32159925 - AluSx SINE Alu -15 297 1 259 235 0 0 chr3 185877295 185877356 -32159802 + AluJ/monomer SINE Alu 1 52 -250 * 285 288 26 41 chr3 185877355 185877552 -32159606 + AluJ/F(R)AM SINE Alu 129 212 -90 1164 222 29 35 chr3 185877653 185877968 -32159190 - L1M4 LINE L1 -2337 4045 3733 2238 106 0 3 chr3 185877968 185878271 -32158887 + AluSc SINE Alu 1 302 -7 1373 202 4 4 chr3 185878278 185878535 -32158623 + AluJo SINE Alu 33 289 -23 4143 212 35 58 chr3 185878549 185879671 -32157487 - L1M4 LINE L1 -2654 3728 2582 1117 180 0 17 chr3 185879671 185879849 -32157309 - FAM SINE Alu 0 175 1 4143 212 35 58 chr3 185879849 185879935 -32157223 - L1M4 LINE L1 -3800 2582 2496 2246 120 0 0 chr3 185879935 185880235 -32156923 - AluSx SINE Alu -10 302 3 4143 212 35 58 chr3 185880235 185880387 -32156771 - L1M4 LINE L1 -3886 2496 2342 2048 118 7 0 chr3 185880387 185880698 -32156460 + AluSx SINE Alu 1 313 0 2142 108 10 7 chr3 185880705 185881001 -32156157 + AluSx SINE Alu 1 297 -15 4143 212 35 58 chr3 185881001 185881051 -32156107 - L1M4 LINE L1 -3988 2394 2344 261 303 91 23 chr3 185881124 185881256 -32155902 - L2 LINE L2 -584 2730 2590 2620 43 0 0 chr3 185881258 185881557 -32155601 + AluY SINE Alu 1 299 -12 902 152 7 0 chr3 185881589 185881727 -32155431 - MER3 DNA MER1_type -70 139 1 1587 193 43 7 chr3 185881742 185882043 -32155115 + MER58B DNA MER1_type 1 312 -29 2456 60 0 3 chr3 185882044 185882343 -32154815 - AluY SINE Alu -13 298 1 234 91 0 0 chr3 185882381 185882414 -32154744 + (A)n Simple_repeat Simple_repeat 1 33 0 1786 160 19 13 chr3 185882453 185882760 -32154398 + AluSx SINE Alu 1 309 -3 2128 125 3 0 chr3 185883448 185883745 -32153413 + AluSq SINE Alu 1 298 -15 26 0 0 0 chr3 185883756 185883782 -32153376 + AT_rich Low_complexity Low_complexity 1 26 0 1636 176 0 32 chr3 185883967 185884280 -32152878 + AluJb SINE Alu 1 303 -9 230 224 96 72 chr3 185884302 185884427 -32152731 + MIR SINE MIR 7 134 -128 1974 121 39 0 chr3 185884479 185884759 -32152399 + AluSx SINE Alu 1 291 -21 22 35 0 0 chr3 185885392 185885421 -32151737 + AT_rich Low_complexity Low_complexity 1 29 0 2198 99 11 0 chr3 185885421 185885705 -32151453 - AluSq SINE Alu -26 287 1 944 188 17 6 chr3 185885834 185886015 -32151143 - AluJb SINE Alu -3 309 127 1239 120 0 0 chr3 185886069 185886236 -32150922 - AluSp SINE Alu -12 301 135 1837 144 42 0 chr3 185886636 185886921 -32150237 + AluSx SINE Alu 1 297 -15 2282 103 3 0 chr3 185887270 185887571 -32149587 + AluSq SINE Alu 1 302 -11 415 295 90 17 chr3 185887786 185888020 -32149138 + L2 LINE L2 1802 2052 -1262 12748 155 28 41 chr3 185888191 185889874 -32147284 + L1MA3 LINE L1 2777 4481 -1824 2416 86 3 0 chr3 185889874 185890176 -32146982 + AluSp SINE Alu 1 303 -10 12748 155 28 41 chr3 185890176 185891113 -32146045 + L1MA3 LINE L1 4481 5429 -876 2223 113 3 0 chr3 185891113 185891414 -32145744 - AluSx SINE Alu -10 302 1 12748 155 28 41 chr3 185891414 185891425 -32145733 + L1MA3 LINE L1 5429 5439 -866 2409 82 0 0 chr3 185891425 185891719 -32145439 - AluY SINE Alu -17 294 1 12748 155 28 41 chr3 185891719 185892412 -32144746 + L1MA3 LINE L1 5439 6081 -224 1170 154 43 30 chr3 185892412 185892623 -32144535 + AluJb SINE Alu 77 293 -19 1615 116 39 0 chr3 185892623 185892881 -32144277 + L1MA3 LINE L1 6036 6303 -2 1170 154 43 30 chr3 185892881 185892902 -32144256 + AluJb SINE Alu 293 312 0 324 317 82 64 chr3 185892909 185892997 -32144161 - L1MC/D LINE L1 -2204 5604 5519 2400 74 3 0 chr3 185892997 185893296 -32143862 - AluY SINE Alu -11 300 1 324 317 82 64 chr3 185893296 185893308 -32143850 - L1MC/D LINE L1 -2289 5519 5509 2232 105 17 0 chr3 185893308 185893602 -32143556 - AluSq SINE Alu -14 299 1 324 317 82 64 chr3 185893602 185893781 -32143377 - L1MC/D LINE L1 -2299 5509 5319 1817 151 310 49 chr3 185894370 185894919 -32142239 + L1MB7 LINE L1 5488 6179 -5 1802 130 44 34 chr3 185894943 185895236 -32141922 - AluSx SINE Alu -16 296 1 1685 169 3 29 chr3 185895416 185895723 -32141435 - AluJo SINE Alu -13 299 1 236 30 30 0 chr3 185895814 185895847 -32141311 + (TC)n Simple_repeat Simple_repeat 2 35 0 2349 99 0 3 chr3 185896082 185896394 -32140764 + AluY SINE Alu 1 311 0 2544 80 3 0 chr3 185897470 185897781 -32139377 - AluSp SINE Alu -1 312 1 1423 152 91 23 chr3 185898046 185898330 -32138828 + AluJo SINE Alu 1 302 0 292 267 121 18 chr3 185898331 185898496 -32138662 + L1M4c LINE L1 1465 1646 -4738 1250 145 52 28 chr3 185898508 185898756 -32138402 + L1MB4 LINE L1 5927 6180 0 1912 147 6 32 chr3 185898810 185898951 -32138207 + AluJb SINE Alu 2 145 -167 2140 96 0 81 chr3 185898951 185899284 -32137874 + AluSq SINE Alu 1 306 -7 1912 147 6 32 chr3 185899284 185899456 -32137702 + AluJb SINE Alu 145 307 -5 581 212 150 0 chr3 185899565 185899678 -32137480 + FLAM_A SINE Alu 1 130 -3 252 182 0 36 chr3 185899709 185899764 -32137394 + L1ME1 LINE L1 5947 5999 -167 732 205 103 5 chr3 185899968 185900153 -32137005 - MER21B LTR ERV1 -48 815 613 1106 129 158 203 chr3 185900244 185900831 -32136327 + LTR29 LTR ERV1 62 622 0 1311 240 163 24 chr3 185900831 185901243 -32135915 - MER21B LTR ERV1 -300 563 95 789 249 45 14 chr3 185901640 185901861 -32135297 + Charlie2 DNA MER1_type 1 228 -2554 632 224 147 42 chr3 185901863 185902380 -32134778 + L1ME1 LINE L1 5609 6161 -5 2147 100 0 0 chr3 185902453 185902764 -32134394 + AluSx SINE Alu 1 311 0 969 173 12 0 chr3 185902966 185903128 -32134030 - AluJb SINE Alu -13 299 136 920 188 45 72 chr3 185903242 185903307 -32133851 + AluJo SINE Alu 66 131 -181 2014 100 70 0 chr3 185903307 185903578 -32133580 - AluSp SINE Alu -23 290 1 920 188 45 72 chr3 185903578 185903735 -32133423 + AluJo SINE Alu 131 282 -30 255 79 0 0 chr3 185903735 185903773 -32133385 + (TC)n Simple_repeat Simple_repeat 1 38 0 3126 157 53 26 chr3 185903803 185904369 -32132789 + L1MA7 LINE L1 5707 6287 -4 1579 173 10 59 chr3 185905253 185905559 -32131599 - AluJo SINE Alu -21 291 1 1198 99 0 6 chr3 185906097 185906258 -32130900 - L1PB1 LINE L1 0 6151 5992 1577 175 17 24 chr3 185906749 185907046 -32130112 - AluJb SINE Alu -4 308 14 2110 126 3 0 chr3 185907239 185907532 -32129626 + AluSx SINE Alu 1 294 -18 859 189 0 0 chr3 185907555 185907687 -32129471 + FLAM_C SINE Alu 2 133 0 2309 101 0 3 chr3 185907775 185908073 -32129085 + AluSg SINE Alu 1 297 -13 1272 122 206 57 chr3 185908574 185908836 -32128322 + AluSx SINE Alu 2 302 0 26 50 0 0 chr3 185908875 185908915 -32128243 + AT_rich Low_complexity Low_complexity 1 40 0 2310 97 10 0 chr3 185909309 185909608 -32127550 + AluSp SINE Alu 1 302 -11 2116 137 0 0 chr3 185909619 185909912 -32127246 + AluSx SINE Alu 1 293 -19 526 203 52 33 chr3 185910477 185910630 -32126528 + L1MC4 LINE L1 7156 7311 -731 1269 164 123 26 chr3 185910799 185911067 -32126091 + AluJo SINE Alu 1 294 -18 627 214 0 0 chr3 185911171 185911283 -32125875 + AluJb SINE Alu 198 309 -3 1632 188 10 3 chr3 185911290 185911583 -32125575 + AluJo SINE Alu 1 295 -17 470 118 17 151 chr3 185911603 185911722 -32125436 - AluJb SINE Alu 0 312 210 329 100 150 0 chr3 185911722 185911782 -32125376 + LTR64 LTR ERVK 490 558 0 2302 97 0 0 chr3 185911875 185912163 -32124995 + AluSx SINE Alu 1 288 -24 185 0 40 0 chr3 185912167 185912192 -32124966 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2270 113 0 3 chr3 185912379 185912689 -32124469 + AluSx SINE Alu 1 309 -3 265 284 84 53 chr3 185912720 185912910 -32124248 + L1M4 LINE L1 4730 4925 -1221 2093 128 3 0 chr3 185913010 185913307 -32123851 + AluSx SINE Alu 1 298 -14 1145 150 0 0 chr3 185913307 185913474 -32123684 + AluSg/x SINE Alu 132 298 -12 1364 177 83 19 chr3 185914043 185914308 -32122850 + AluJb SINE Alu 1 282 -30 1827 146 28 74 chr3 185914569 185914932 -32122226 + L1PB4 LINE L1 5807 6152 -4 441 158 0 0 chr3 185914982 185915064 -32122094 + (TG)n Simple_repeat Simple_repeat 1 82 0 1574 139 105 8 chr3 185915064 185915322 -32121836 - AluJb SINE Alu -29 283 1 185 222 0 56 chr3 185915443 185915497 -32121661 + L2 LINE L2 3251 3301 -12 261 318 224 24 chr3 185915508 185915976 -32121182 + L2 LINE L2 2301 2862 -452 236 302 114 89 chr3 185916046 185916361 -32120797 + L2 LINE L2 2941 3263 -9 2148 119 3 3 chr3 185917427 185917739 -32119419 + AluSx SINE Alu 1 312 0 961 134 0 22 chr3 185917933 185918067 -32119091 + FLAM_C SINE Alu 2 132 -1 2214 129 0 0 chr3 185918816 185919127 -32118031 + AluSx SINE Alu 1 311 -1 2312 41 4 0 chr3 185919455 185919723 -32117435 + L1PA4 LINE L1 5887 6155 0 316 332 77 34 chr3 185920643 185920851 -32116307 + L1M2 LINE L1 899 1115 -5734 2717 42 0 0 chr3 185922085 185922396 -32114762 + AluY SINE Alu 1 311 0 770 176 8 0 chr3 185922662 185922793 -32114365 + FLAM_C SINE Alu 2 133 0 746 97 0 136 chr3 185922893 185923048 -32114110 + AluSq SINE Alu 151 284 -29 1066 199 36 5 chr3 185923063 185923284 -32113874 - L1MB7 LINE L1 -27 6157 5930 1116 169 0 0 chr3 185923288 185923460 -32113698 - AluJo SINE Alu -138 174 3 4059 186 51 50 chr3 185923460 185923711 -32113447 - L1MB7 LINE L1 -654 5530 5281 1584 199 33 13 chr3 185923711 185924013 -32113145 - AluJo SINE Alu -4 308 1 4059 186 51 50 chr3 185924013 185925074 -32112084 - L1MB7 LINE L1 -903 5281 4215 946 81 0 0 chr3 185925074 185925197 -32111961 - AluY SINE Alu -11 300 178 1958 145 3 13 chr3 185925382 185925686 -32111472 - AluSx SINE Alu -11 301 1 2656 40 0 0 chr3 185927343 185927643 -32109515 - AluY SINE Alu -11 300 1 279 325 163 20 chr3 185927842 185928163 -32108995 - L2 LINE L2 -797 2517 2127 2051 152 0 3 chr3 185928163 185928465 -32108693 + AluJb SINE Alu 1 301 -11 279 325 163 20 chr3 185928465 185928543 -32108615 - L2 LINE L2 -1187 2127 2061 2151 87 0 53 chr3 185928639 185928973 -32108185 + AluY SINE Alu 1 318 0 23 54 0 0 chr3 185929016 185929053 -32108105 + AT_rich Low_complexity Low_complexity 1 37 0 336 137 26 145 chr3 185929110 185929227 -32107931 - L1MD3 LINE L1 0 7995 7893 247 315 131 50 chr3 185929264 185929721 -32107437 - L1MEd LINE L1 -5558 561 68 31 36 0 18 chr3 185929880 185929911 -32107247 + AT_rich Low_complexity Low_complexity 1 32 -23 2300 92 0 0 chr3 185929911 185930194 -32106964 - AluSg SINE Alu -27 283 1 31 36 0 18 chr3 185930194 185930218 -32106940 + AT_rich Low_complexity Low_complexity 32 55 0 2444 58 3 58 chr3 185930385 185930711 -32106447 - AluY SINE Alu -3 308 1 1021 150 0 6 chr3 185931006 185931186 -32105972 - L1MA5 LINE L1 0 6300 6122 680 117 0 0 chr3 185931186 185931280 -32105878 - U6 snRNA snRNA -13 94 1 1725 84 0 5 chr3 185931369 185931582 -32105576 + AluSp SINE Alu 1 212 -101 263 207 0 52 chr3 185931582 185931640 -32105518 + FLAM SINE Alu 78 132 -1 2231 129 0 0 chr3 185932389 185932700 -32104458 + AluSx SINE Alu 1 311 -1 2210 41 4 0 chr3 185933028 185933296 -32103862 + L1PA4 LINE L1 5887 6155 0 2717 42 0 0 chr3 185935658 185935969 -32101189 + AluY SINE Alu 1 311 0 770 176 8 0 chr3 185936235 185936366 -32100792 + FLAM_C SINE Alu 2 133 0 746 97 0 136 chr3 185936466 185936621 -32100537 + AluSq SINE Alu 151 284 -29 1096 200 36 0 chr3 185936636 185936856 -32100302 - L1MB7 LINE L1 -27 6157 5930 1116 169 0 0 chr3 185936860 185937032 -32100126 - AluJo SINE Alu -138 174 3 3659 185 37 55 chr3 185937032 185937283 -32099875 - L1MB7 LINE L1 -654 5530 5276 1584 199 33 13 chr3 185937283 185937585 -32099573 - AluJo SINE Alu -4 308 1 3659 185 37 55 chr3 185937585 185938520 -32098638 - L1MB7 LINE L1 -908 5276 4367 1538 139 8 16 chr3 185938625 185938869 -32098289 - AluSq SINE Alu -71 242 1 22 56 0 0 chr3 185939144 185939180 -32097978 + AT_rich Low_complexity Low_complexity 1 36 0 23 68 0 0 chr3 185939324 185939368 -32097790 + AT_rich Low_complexity Low_complexity 1 44 0 927 221 6 0 chr3 185939883 185940055 -32097103 - AluJb SINE Alu -139 173 1 1392 193 67 0 chr3 185940136 185940406 -32096752 - AluJo SINE Alu -24 288 1 570 193 18 18 chr3 185940725 185940839 -32096319 + FLAM_A SINE Alu 12 125 -17 762 168 23 0 chr3 185941050 185941181 -32095977 - FLAM_A SINE Alu -8 134 1 959 179 98 18 chr3 185941183 185941407 -32095751 + MER58 DNA MER1_type 42 283 -58 2103 100 46 0 chr3 185941793 185942073 -32095085 - AluSx SINE Alu -19 293 1 222 150 0 0 chr3 185943300 185943340 -32093818 + (T)n Simple_repeat Simple_repeat 1 40 0 426 158 134 0 chr3 185943455 185943537 -32093621 + AluJ/FLAM SINE Alu 2 94 -218 1240 150 8 79 chr3 185943546 185943662 -32093496 + AluJb SINE Alu 31 121 -191 2373 74 0 13 chr3 185943662 185943960 -32093198 + AluY SINE Alu 1 294 -17 1240 150 8 79 chr3 185943960 185944096 -32093062 + AluJb SINE Alu 121 265 -47 1910 125 10 58 chr3 185944348 185944661 -32092497 - AluSq SINE Alu -15 298 1 294 274 97 0 chr3 185944699 185944823 -32092335 + MIR SINE MIR 127 262 0 1232 60 13 0 chr3 185945194 185945345 -32091813 - AluSc SINE Alu -103 206 54 570 150 39 31 chr3 185945345 185945472 -32091686 - MER41A-int LTR ERV1 -5818 128 1 4007 84 11 39 chr3 185945577 185945714 -32091444 - MER41A LTR ERV1 0 554 415 2302 102 0 0 chr3 185945714 185946009 -32091149 + AluSx SINE Alu 2 296 -16 4007 84 11 39 chr3 185946009 185946441 -32090717 - MER41A LTR ERV1 -139 415 1 639 206 24 77 chr3 185946441 185946611 -32090547 + MER21B LTR ERV1 681 841 -22 230 0 33 0 chr3 185946614 185946644 -32090514 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2066 143 0 3 chr3 185946926 185947234 -32089924 + AluSx SINE Alu 2 308 -4 1392 140 83 64 chr3 185949657 185949971 -32087187 + MER33 DNA MER1_type 1 320 -4 337 214 29 58 chr3 185950106 185950130 -32087028 - Charlie7 DNA MER1_type -2511 101 78 859 188 0 0 chr3 185950130 185950295 -32086863 + FRAM SINE Alu 1 165 -1 337 214 29 58 chr3 185950295 185950373 -32086785 - Charlie7 DNA MER1_type -2534 78 2 2023 103 3 69 chr3 185951287 185951606 -32085552 - AluSq SINE Alu -15 298 1 865 238 113 70 chr3 185951649 185951864 -32085294 - HAL1 LINE L1 -240 2267 2063 2125 147 0 3 chr3 185951864 185952177 -32084981 - AluSx SINE Alu 0 312 1 865 238 113 70 chr3 185952177 185952403 -32084755 - HAL1 LINE L1 -444 2063 1807 7606 161 97 45 chr3 185952881 185954495 -32082663 + pTR5 LTR ERV1 741 2438 0 643 233 100 9 chr3 185954513 185954723 -32082435 + L1MC5 LINE L1 7006 7234 -727 462 198 91 136 chr3 185954846 185955061 -32082097 + L1MC5 LINE L1 7263 7451 -510 2072 146 0 0 chr3 185955061 185955356 -32081802 - AluSx SINE Alu -16 296 2 462 198 91 136 chr3 185955356 185955559 -32081599 + L1MC5 LINE L1 7451 7662 -299 2162 113 10 3 chr3 185955583 185955885 -32081273 + AluSc SINE Alu 1 304 -5 2286 107 0 0 chr3 185956316 185956614 -32080544 + AluSg1 SINE Alu 1 298 -11 2219 122 0 0 chr3 185957161 185957456 -32079702 + AluSx SINE Alu 1 295 -17 7006 45 13 0 chr3 185957476 185958806 -32078352 - L1PA6 LINE L1 -2 6152 4858 188 344 68 6 chr3 185958987 185959100 -32078058 - L2 LINE L2 -12 3301 3174 1886 97 0 0 chr3 185959100 185959338 -32077820 + AluSq SINE Alu 61 298 -15 188 344 68 6 chr3 185959338 185959387 -32077771 - L2 LINE L2 -139 3174 3129 1777 185 3 3 chr3 185959412 185959714 -32077444 + AluJb SINE Alu 1 302 -10 2116 137 0 0 chr3 185959720 185960026 -32077132 + AluSx SINE Alu 1 306 -6 3032 78 10 29 chr3 185960027 185960285 -32076873 - MER41A LTR ERV1 -127 427 178 2066 136 0 10 chr3 185960285 185960594 -32076564 - AluSx SINE Alu -6 306 1 3032 78 10 29 chr3 185960594 185960748 -32076410 - MER41A LTR ERV1 -376 178 23 2205 118 0 0 chr3 185960749 185961045 -32076113 + AluY SINE Alu 3 298 -13 1226 155 24 10 chr3 185961046 185961077 -32076081 - HERVK14 LTR ERVK -154 5791 5758 2830 108 39 30 chr3 185961077 185961393 -32075765 - MER41A-int LTR ERV1 -1 5945 5622 2133 136 7 0 chr3 185961393 185961694 -32075464 + AluSp SINE Alu 1 303 -10 2830 108 39 30 chr3 185961694 185961841 -32075317 - MER41A-int LTR ERV1 -324 5622 5478 1537 159 69 22 chr3 185962833 185963110 -32074048 + AluJo SINE Alu 1 290 -22 22 70 0 0 chr3 185963110 185963153 -32074005 + AT_rich Low_complexity Low_complexity 1 43 0 1275 178 49 8 chr3 185963175 185963422 -32073736 - AluJo SINE Alu -16 296 40 2088 76 65 4 chr3 185963554 185963830 -32073328 + AluSq SINE Alu 1 293 -20 2174 103 7 3 chr3 185963834 185964136 -32073022 + AluY SINE Alu 5 307 -4 613 167 92 17 chr3 185964296 185964416 -32072742 - FLAM_C SINE Alu 0 133 5 1512 142 109 8 chr3 185964840 185965107 -32072051 + AluJb SINE Alu 1 294 -18 2373 99 3 3 chr3 185966224 185966536 -32070622 - AluSx SINE Alu 0 312 1 24 53 0 0 chr3 185966671 185966709 -32070449 + AT_rich Low_complexity Low_complexity 1 38 0 2168 125 3 0 chr3 185967166 185967469 -32069689 + AluSx SINE Alu 1 304 -8 2292 76 20 20 chr3 185967786 185968090 -32069068 - AluY SINE Alu -7 304 1 706 148 35 0 chr3 185968310 185968425 -32068733 - AluSq/x SINE Alu -193 120 2 1898 117 4 0 chr3 185968682 185968938 -32068220 + AluSp SINE Alu 1 257 -56 216 0 0 0 chr3 185968941 185968965 -32068193 + (TAA)n Simple_repeat Simple_repeat 2 25 0 2171 101 7 16 chr3 185969040 185969346 -32067812 + AluSx SINE Alu 1 303 -9 1994 87 76 0 chr3 185969364 185969666 -32067492 + AluSx SINE Alu 1 322 0 212 253 187 11 chr3 185969898 185969989 -32067169 + MER5A DNA MER1_type 81 187 -2 2141 123 0 46 chr3 185970146 185970470 -32066688 + AluSx SINE Alu 1 309 -3 379 298 152 39 chr3 185971497 185971698 -32065460 + L2 LINE L2 2911 3088 -225 414 0 0 0 chr3 185971698 185971744 -32065414 + (TG)n Simple_repeat Simple_repeat 2 47 0 379 298 152 39 chr3 185971744 185971904 -32065254 + L2 LINE L2 3088 3313 0 1975 100 4 8 chr3 185972099 185972358 -32064800 - AluSx SINE Alu -21 291 34 3650 97 49 20 chr3 185972368 185972924 -32064234 - MER41-int LTR ERV1 -224 5722 5151 2068 132 4 0 chr3 185972924 185973236 -32063922 - AluSx SINE Alu 0 313 1 10762 128 65 26 chr3 185973237 185975045 -32062113 - MER41-int LTR ERV1 -3120 3143 1475 219 114 0 0 chr3 185975045 185975080 -32062078 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 10762 128 65 26 chr3 185975080 185975256 -32061902 - MER41-int LTR ERV1 -4788 1475 1307 345 122 0 122 chr3 185975248 185975294 -32061864 - MER41-int LTR ERV1 -5096 850 815 * 2228 93 3 7 chr3 185975294 185975596 -32061562 + AluSc SINE Alu 1 301 -8 345 122 0 122 chr3 185975596 185975623 -32061535 - MER41-int LTR ERV1 -5131 815 786 774 145 96 6 chr3 185975824 185975990 -32061168 + MIR SINE MIR 72 252 -10 259 200 15 0 chr3 185976059 185976124 -32061034 - MER112 DNA MER1_type -85 175 110 955 205 0 0 chr3 185976792 185976948 -32060210 + FAM SINE Alu 1 156 -19 388 107 4 6 chr3 185977293 185977539 -32059619 + AluSx SINE Alu 1 300 -2 21 0 0 0 chr3 185977850 185977871 -32059287 + AT_rich Low_complexity Low_complexity 1 21 0 47 108 0 0 chr3 185980013 185980207 -32056951 + GC_rich Low_complexity Low_complexity 1 194 0 35 41 0 0 chr3 185980700 185980749 -32056409 + GC_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr3 185981520 185981544 -32055614 + GC_rich Low_complexity Low_complexity 1 24 0 2306 85 26 7 chr3 185982527 185982833 -32054325 + AluSx SINE Alu 1 312 0 457 316 13 7 chr3 185984799 185984951 -32052207 - MIR SINE MIR -50 212 60 848 145 0 0 chr3 185984967 185985098 -32052060 - AluSg SINE Alu -179 131 1 26 30 0 0 chr3 185985398 185985431 -32051727 + AT_rich Low_complexity Low_complexity 1 33 0 2101 123 13 0 chr3 185985434 185985735 -32051423 + AluSx SINE Alu 2 306 -6 2073 112 22 0 chr3 185985763 185986039 -32051119 + AluSx SINE Alu 13 294 -18 181 270 27 27 chr3 185986242 185986316 -32050842 - MIR SINE MIR -17 245 172 2054 122 7 3 chr3 185986702 185986997 -32050161 - AluSq SINE Alu -17 296 1 2052 112 7 10 chr3 185987169 185987463 -32049695 - AluSx SINE Alu -17 295 3 1863 146 16 3 chr3 185987524 185987832 -32049326 - AluSq SINE Alu -1 312 1 1384 147 49 0 chr3 185988557 185988781 -32048377 + MER46A DNA MER2_type 1 235 -1 2373 89 7 0 chr3 185988964 185989266 -32047892 - AluSq SINE Alu -9 304 1 1333 202 12 12 chr3 185989462 185989710 -32047448 - AluJo SINE Alu -64 248 1 4353 159 72 44 chr3 185989838 185989952 -32047206 - L1MB7 LINE L1 -17 6167 6058 1897 105 0 15 chr3 185989952 185990218 -32046940 - AluSq SINE Alu -7 306 45 4353 159 72 44 chr3 185990218 185990582 -32046576 - L1MB7 LINE L1 -126 6058 5706 2802 3 0 35 chr3 185990582 185990901 -32046257 + AluYa5 SINE Alu 1 308 -3 4353 159 72 44 chr3 185990901 185991395 -32045763 - L1MB7 LINE L1 -478 5706 5227 1442 185 83 4 chr3 185991395 185991671 -32045487 - AluJb SINE Alu -14 298 1 4353 159 72 44 chr3 185991671 185991790 -32045368 - L1MB7 LINE L1 -957 5227 5113 2185 112 0 11 chr3 185991790 185992114 -32045044 - AluSx SINE Alu 0 321 1 4353 159 72 44 chr3 185992114 185992250 -32044908 - L1MB7 LINE L1 -1071 5113 4896 2224 118 3 0 chr3 185992250 185992554 -32044604 - AluSx SINE Alu -7 305 1 1742 172 0 23 chr3 185992785 185993087 -32044071 - AluJo SINE Alu -17 295 1 788 226 26 5 chr3 185993434 185993624 -32043534 - AluSg/x SINE Alu -1 311 118 26 30 0 0 chr3 185993677 185993710 -32043448 + AT_rich Low_complexity Low_complexity 1 33 0 2437 83 0 22 chr3 185993747 185994061 -32043097 - AluSg SINE Alu -3 307 1 2354 100 3 0 chr3 185994098 185994398 -32042760 - AluSg SINE Alu -9 301 1 1873 129 64 0 chr3 185994761 185995041 -32042117 - AluSx SINE Alu -14 298 1 318 26 0 0 chr3 185995056 185995095 -32042063 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1711 115 8 0 chr3 185995099 185995334 -32041824 - AluSx SINE Alu -28 284 48 1172 88 14 0 chr3 185995336 185995484 -32041674 - AluSq/x SINE Alu -162 150 1 2134 133 3 0 chr3 185995841 185996150 -32041008 - AluSx SINE Alu -2 310 1 204 232 111 50 chr3 185996159 185996258 -32040900 + MIR SINE MIR 110 214 -48 2287 106 3 3 chr3 185996567 185996878 -32040280 + AluSx SINE Alu 1 311 -1 1377 172 31 58 chr3 185997041 185997332 -32039826 - AluJo SINE Alu -28 284 2 312 156 109 0 chr3 185997344 185997408 -32039750 - MLT2B2 LTR ERVL -444 71 1 204 216 0 0 chr3 185997558 185997595 -32039563 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 2188 114 0 0 chr3 185997640 185997939 -32039219 - AluSx SINE Alu -13 299 1 682 148 106 7 chr3 185998117 185998259 -32038899 - MER105 DNA DNA -42 162 7 413 158 59 30 chr3 185998268 185998369 -32038789 - MER112 DNA MER1_type -42 218 115 1137 109 0 51 chr3 185999440 185999615 -32037543 - AluSg/x SINE Alu -13 297 132 2097 105 13 41 chr3 185999615 185999929 -32037229 - AluSx SINE Alu -7 305 1 1075 164 58 29 chr3 186000138 186000345 -32036813 + AluJo SINE Alu 85 297 -15 208 204 0 148 chr3 186001451 186001539 -32035619 - L2 LINE L2 -4 3309 3235 368 306 0 0 chr3 186001563 186001661 -32035497 + L3 LINE CR1 1453 1550 -27 1468 193 16 33 chr3 186002016 186002322 -32034836 - AluJo SINE Alu -2 310 10 4800 111 8 17 chr3 186002504 186002598 -32034560 - Tigger1 DNA MER2_type -876 1542 1449 2213 127 0 0 chr3 186002598 186002898 -32034260 + AluSg SINE Alu 1 300 -10 4800 111 8 17 chr3 186002898 186003516 -32033642 - Tigger1 DNA MER2_type -969 1449 836 1065 137 0 17 chr3 186003515 186003690 -32033468 - Tigger1 DNA MER2_type -1783 635 464 * 1340 109 0 11 chr3 186003706 186003889 -32033269 - AluSg/x SINE Alu -5 307 127 473 198 0 0 chr3 186003890 186003976 -32033182 + L1M1 LINE L1 3525 3610 -3955 914 155 0 0 chr3 186003983 186004112 -32033046 + AluSq/x SINE Alu 1 129 -184 2173 125 3 0 chr3 186004113 186004409 -32032749 + AluSx SINE Alu 2 298 -14 6326 156 45 62 chr3 186004409 186005189 -32031969 + L1M1 LINE L1 4198 4990 -2575 1703 203 0 10 chr3 186005189 186005494 -32031664 + AluJo SINE Alu 1 302 -10 2348 91 7 0 chr3 186005501 186005797 -32031361 + AluSq SINE Alu 1 298 -15 6326 156 45 62 chr3 186005797 186005993 -32031165 + L1M1 LINE L1 4996 5194 -2371 1908 151 0 11 chr3 186005993 186006128 -32031030 + AluSx SINE Alu 1 136 -172 2362 100 0 25 chr3 186006128 186006448 -32030710 + AluSx SINE Alu 1 312 0 1908 151 0 11 chr3 186006448 186006623 -32030535 + AluSx SINE Alu 136 308 0 6326 156 45 62 chr3 186006623 186007116 -32030042 + L1M1 LINE L1 5194 5652 -1913 1074 101 0 7 chr3 186007130 186007278 -32029880 - MER41A LTR ERV1 -223 331 185 3282 85 5 13 chr3 186007379 186007826 -32029332 - MER41A LTR ERV1 -110 444 2 237 271 0 0 chr3 186008220 186008268 -32028890 + polypyrimidine Low_complexity Low_complexity 3 50 0 2277 90 31 0 chr3 186008424 186008714 -32028444 + AluSq SINE Alu 1 299 -14 22 80 0 0 chr3 186009472 186009522 -32027636 + AT_rich Low_complexity Low_complexity 1 50 0 2347 81 17 0 chr3 186009590 186009888 -32027270 + AluSp SINE Alu 1 303 -10 280 270 34 40 chr3 186010675 186010812 -32026346 - L1ME LINE L1 -374 5747 5610 2235 64 50 0 chr3 186010812 186011094 -32026064 - AluY SINE Alu -15 296 1 1310 166 5 5 chr3 186011113 186011336 -32025822 - AluJb SINE Alu 0 312 90 261 57 0 0 chr3 186011336 186011371 -32025787 + (GA)n Simple_repeat Simple_repeat 2 36 0 1947 129 10 14 chr3 186011701 186011995 -32025163 + AluSg SINE Alu 1 293 -17 291 353 41 8 chr3 186012009 186012131 -32025027 - MER5A DNA MER1_type -57 132 7 2348 107 0 7 chr3 186012185 186012494 -32024664 + AluSc SINE Alu 1 307 -2 2233 113 0 3 chr3 186013145 186013446 -32023712 + AluSp SINE Alu 1 300 -13 1901 127 53 3 chr3 186013876 186014160 -32022998 + AluSx SINE Alu 15 312 0 544 112 45 0 chr3 186014176 186014265 -32022893 + MER3 DNA MER1_type 117 209 0 564 107 0 0 chr3 186014325 186014400 -32022758 + AluSg/x SINE Alu 113 187 -123 1064 107 0 0 chr3 186014428 186014559 -32022599 - AluSq/x SINE Alu -182 131 1 426 262 73 103 chr3 186014559 186014967 -32022191 - MLT1K LTR MaLR -5 583 188 2202 125 3 0 chr3 186015204 186015499 -32021659 - AluSx SINE Alu -16 296 1 229 243 68 0 chr3 186015638 186015712 -32021446 + MIR SINE MIR 120 198 -64 186 43 0 0 chr3 186015760 186015783 -32021375 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2000 117 0 7 chr3 186015785 186016067 -32021091 - AluSc SINE Alu -29 280 1 3794 156 85 12 chr3 186016068 186016760 -32020398 + L1MA4 LINE L1 5335 6077 -223 1168 166 47 9 chr3 186016760 186016971 -32020187 + AluJb SINE Alu 77 295 -17 1556 109 24 0 chr3 186016981 186017229 -32019929 + L1MA3 LINE L1 6050 6303 -2 2405 77 3 0 chr3 186017344 186017642 -32019516 - AluY SINE Alu -12 299 1 2267 102 17 0 chr3 186017654 186017948 -32019210 - AluSq SINE Alu -14 299 1 1781 151 309 51 chr3 186018716 186019266 -32017892 + L1MB7 LINE L1 5488 6179 -5 1808 130 45 34 chr3 186019290 186019582 -32017576 - AluSx SINE Alu -17 295 1 1695 169 3 29 chr3 186019762 186020069 -32017089 - AluJo SINE Alu -13 299 1 236 30 30 0 chr3 186020160 186020193 -32016965 + (TC)n Simple_repeat Simple_repeat 2 35 0 591 116 0 0 chr3 186020352 186020438 -32016720 - AluSg/x SINE Alu -12 297 212 2366 128 69 0 chr3 186020439 186020845 -32016313 + L1MA8 LINE L1 5858 6291 0 2208 91 27 3 chr3 186020850 186021147 -32016011 + AluY SINE Alu 1 304 -7 3991 172 92 7 chr3 186021147 186022009 -32015149 + L1MB4 LINE L1 5247 6180 0 629 233 127 76 chr3 186022039 186022449 -32014709 + MLT1F LTR MaLR 11 481 -61 772 198 0 102 chr3 186022449 186022626 -32014532 - FRAM SINE Alu -7 159 1 629 233 127 76 chr3 186022626 186022691 -32014467 + MLT1F LTR MaLR 481 541 -1 2234 103 10 3 chr3 186022841 186023143 -32014015 - AluSx SINE Alu -8 304 1 1458 60 11 0 chr3 186026023 186026205 -32010953 + AluY SINE Alu 128 311 0 23 0 0 0 chr3 186026499 186026522 -32010636 + AT_rich Low_complexity Low_complexity 1 23 0 2177 110 3 10 chr3 186028703 186029004 -32008154 + AluSg SINE Alu 1 299 -11 31 58 0 0 chr3 186029411 186029463 -32007695 + AT_rich Low_complexity Low_complexity 1 52 0 1912 121 19 0 chr3 186029542 186029806 -32007352 + AluSg SINE Alu 1 269 -41 2439 177 36 18 chr3 186030159 186030707 -32006451 + L1M4 LINE L1 4348 4905 -1241 1271 58 53 0 chr3 186030708 186030897 -32006261 + AluY SINE Alu 1 199 -112 891 149 21 4 chr3 186031002 186031251 -32005907 + CT-rich Low_complexity Low_complexity 1 253 0 1385 176 111 32 chr3 186031255 186031534 -32005624 - AluJb SINE Alu -1 301 1 1978 140 33 43 chr3 186031534 186031914 -32005244 - L1M2 LINE L1 -509 5782 5400 1410 173 46 32 chr3 186031914 186032198 -32004960 + AluJb SINE Alu 1 288 -24 2467 49 0 10 chr3 186032208 186032512 -32004646 + AluYa5 SINE Alu 1 301 -10 1978 140 33 43 chr3 186032512 186032531 -32004627 - L1M2 LINE L1 -900 5391 5373 1843 181 0 3 chr3 186032531 186032835 -32004323 + AluSx SINE Alu 1 303 -9 1978 140 33 43 chr3 186032835 186033974 -32003184 - L1M2 LINE L1 -918 5373 4161 1856 129 0 72 chr3 186034120 186034273 -32002885 + Tigger1 DNA MER2_type 2110 2228 -190 2284 112 0 0 chr3 186034273 186034576 -32002582 - AluSg SINE Alu -7 303 1 1856 129 0 72 chr3 186034576 186034755 -32002403 + Tigger1 DNA MER2_type 2228 2418 0 38 22 0 0 chr3 186034784 186034829 -32002329 + AT_rich Low_complexity Low_complexity 1 45 0 351 262 121 7 chr3 186034831 186034980 -32002178 - L1ME4a LINE L1 0 6121 5956 1923 146 10 0 chr3 186035051 186035352 -32001806 - AluSx SINE Alu -8 304 1 243 242 110 0 chr3 186035430 186035521 -32001637 - L1ME4a LINE L1 -452 5669 5569 29 70 0 0 chr3 186035885 186035942 -32001216 + AT_rich Low_complexity Low_complexity 1 57 0 1667 125 33 15 chr3 186036051 186036323 -32000835 + AluSx SINE Alu 1 277 -35 218 143 20 0 chr3 186036334 186036383 -32000775 + (CA)n Simple_repeat Simple_repeat 2 51 0 2190 80 43 10 chr3 186036763 186037062 -32000096 - AluY SINE Alu -2 309 1 2258 92 0 16 chr3 186037129 186037434 -31999724 - AluSq SINE Alu -13 300 1 2107 127 0 0 chr3 186038266 186038558 -31998600 - AluSp SINE Alu -20 293 2 2444 42 0 3 chr3 186038814 186039119 -31998039 + AluY SINE Alu 1 304 0 192 77 0 0 chr3 186039252 186039278 -31997880 + (TA)n Simple_repeat Simple_repeat 1 26 0 322 319 18 24 chr3 186039599 186039768 -31997390 + AluJo SINE Alu 87 254 -48 1651 156 37 17 chr3 186040026 186040321 -31996837 - AluSx SINE Alu -11 301 1 2377 93 0 3 chr3 186040331 186040632 -31996526 - AluSx SINE Alu -12 300 1 1227 177 106 8 chr3 186041789 186042026 -31995132 + AluJo SINE Alu 1 260 -52 1647 159 25 50 chr3 186042792 186043112 -31994046 - AluJb SINE Alu 0 312 1 2195 82 43 13 chr3 186043513 186043816 -31993342 - AluSp SINE Alu -1 312 1 2128 121 0 0 chr3 186043839 186044150 -31993008 - AluSq SINE Alu 0 312 2 12660 114 34 32 chr3 186044152 186046404 -31990754 - MER41A-int LTR ERV1 -639 4376 2130 2087 125 3 0 chr3 186046404 186046691 -31990467 - AluSx SINE Alu -24 288 1 12660 114 34 32 chr3 186046691 186046851 -31990307 - MER41A-int LTR ERV1 -2885 2130 1972 1920 121 41 14 chr3 186046851 186047005 -31990153 - AluY SINE Alu -13 298 150 2111 126 0 3 chr3 186047005 186047307 -31989851 - AluSq SINE Alu -12 301 1 1920 121 41 14 chr3 186047307 186047442 -31989716 - AluY SINE Alu -161 150 1 12660 114 34 32 chr3 186047442 186048278 -31988880 - MER41A-int LTR ERV1 -3043 1972 1139 207 0 0 0 chr3 186048278 186048301 -31988857 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 12660 114 34 32 chr3 186048301 186048609 -31988549 - MER41A-int LTR ERV1 -3876 1139 833 2104 118 3 3 chr3 186048609 186048913 -31988245 - AluSg SINE Alu -6 304 1 12660 114 34 32 chr3 186048913 186049419 -31987739 - MER41A-int LTR ERV1 -4182 833 208 2120 118 0 3 chr3 186049419 186049708 -31987450 - AluSg SINE Alu -22 288 1 12660 114 34 32 chr3 186049708 186049917 -31987241 - MER41A-int LTR ERV1 -4807 208 1 800 106 0 45 chr3 186050003 186050104 -31987054 - MER41A LTR ERV1 0 554 459 2019 121 10 0 chr3 186050104 186050394 -31986764 - AluSc SINE Alu -3 306 14 800 106 0 45 chr3 186050394 186050424 -31986734 - MER41A LTR ERV1 -95 459 429 1357 155 30 110 chr3 186050424 186050759 -31986399 + AluYb8 SINE Alu 3 310 -8 1232 120 27 0 chr3 186050762 186050946 -31986212 + AluSg/x SINE Alu 116 304 -6 1570 167 60 0 chr3 186050991 186051273 -31985885 + AluJb SINE Alu 1 299 -13 2690 136 19 57 chr3 186051626 186052213 -31984945 - HUERS-P1 LTR ERV1 -3531 3887 2168 1344 189 104 23 chr3 186052922 186053308 -31983850 + L1 LINE L1 2777 3193 -2953 419 167 24 12 chr3 186053851 186053935 -31983223 - AluY SINE Alu -224 86 2 339 298 87 10 chr3 186054791 186054895 -31982263 - L2 LINE L2 -5 3308 3197 1293 170 19 63 chr3 186055052 186055323 -31981835 + AluJo SINE Alu 40 298 -14 216 302 0 19 chr3 186055935 186055988 -31981170 + MIR SINE MIR 21 72 -136 1412 60 6 0 chr3 186056273 186056440 -31980718 - AluSp SINE Alu -16 297 130 198 0 0 0 chr3 186056442 186056464 -31980694 + (TA)n Simple_repeat Simple_repeat 2 23 0 2095 93 0 24 chr3 186056464 186056753 -31980405 - AluSg SINE Alu -28 282 1 434 298 136 0 chr3 186057203 186057394 -31979764 - MIR SINE MIR -33 229 13 252 0 0 0 chr3 186057400 186057428 -31979730 + (T)n Simple_repeat Simple_repeat 1 28 0 1579 183 14 14 chr3 186057814 186058128 -31979030 + AluJo SINE Alu 1 314 0 676 284 81 18 chr3 186058159 186058209 -31978949 - MIR SINE MIR -19 243 198 322 113 274 0 chr3 186058209 186058271 -31978887 + MADE1 DNA Mariner 2 80 0 676 284 81 18 chr3 186058271 186058442 -31978716 - MIR SINE MIR -64 198 8 218 276 0 0 chr3 186058931 186058989 -31978169 - MIR SINE MIR -20 242 185 525 213 79 104 chr3 186059123 186059199 -31977959 + MIR SINE MIR 66 142 -120 180 0 0 0 chr3 186059199 186059219 -31977939 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1994 105 36 0 chr3 186059222 186059498 -31977660 - AluSx SINE Alu -26 286 1 525 213 79 104 chr3 186059498 186059619 -31977539 + MIR SINE MIR 144 262 0 321 282 230 42 chr3 186060053 186060383 -31976775 + L1M2 LINE L1 597 988 -5861 226 254 18 0 chr3 186060757 186060812 -31976346 + MIR SINE MIR 102 157 -105 192 307 7 100 chr3 186061833 186061973 -31975185 + L2 LINE L2 3159 3285 -28 254 331 21 21 chr3 186062105 186062250 -31974908 + MIR SINE MIR 61 205 -57 585 164 50 127 chr3 186063588 186063714 -31973444 - MIR SINE MIR -1 261 157 2066 116 0 3 chr3 186063714 186064025 -31973133 - AluSx SINE Alu 0 310 1 585 164 50 127 chr3 186064025 186064117 -31973041 - MIR SINE MIR -105 157 59 562 201 114 13 chr3 186064915 186065064 -31972094 + MER5B DNA MER1_type 7 170 -8 1800 124 18 26 chr3 186065083 186065356 -31971802 + AluSx SINE Alu 42 312 0 213 211 19 0 chr3 186065356 186065398 -31971760 + GA-rich Low_complexity Low_complexity 10 55 0 257 311 159 44 chr3 186065444 186065740 -31971418 - L2 LINE L2 -5 3267 2938 315 71 0 0 chr3 186066219 186066261 -31970897 + (TG)n Simple_repeat Simple_repeat 2 43 0 655 270 95 5 chr3 186067795 186068006 -31969152 + MIR SINE MIR 33 262 0 1747 115 8 4 chr3 186068076 186068337 -31968821 - AluSg SINE Alu -4 306 45 469 196 106 67 chr3 186068355 186068534 -31968624 - L1MC5 LINE L1 -29 7932 7747 2347 99 3 0 chr3 186068642 186068946 -31968212 + AluSp SINE Alu 1 305 -8 1232 120 27 0 chr3 186068949 186069133 -31968025 + AluSg/x SINE Alu 116 304 -6 1570 167 60 0 chr3 186069178 186069460 -31967698 + AluJb SINE Alu 1 299 -13 216 163 41 0 chr3 186069502 186069551 -31967607 + (TCTG)n Simple_repeat Simple_repeat 4 54 0 189 171 0 0 chr3 186069890 186069925 -31967233 + CT-rich Low_complexity Low_complexity 1 35 0 2106 114 3 22 chr3 186071832 186072148 -31965010 - AluSq SINE Alu -3 310 1 201 74 0 0 chr3 186072647 186072674 -31964484 + (TTA)n Simple_repeat Simple_repeat 2 28 0 718 221 70 0 chr3 186072739 186072897 -31964261 - MER3 DNA MER1_type 0 209 41 246 387 134 0 chr3 186073334 186073476 -31963682 - L2 LINE L2 0 3272 3112 28 0 0 0 chr3 186074332 186074360 -31962798 + AT_rich Low_complexity Low_complexity 1 28 0 2103 139 7 0 chr3 186074433 186074742 -31962416 - AluJb SINE Alu -1 311 1 2068 142 0 0 chr3 186076121 186076423 -31960735 - AluSx SINE Alu -10 302 1 1432 172 114 0 chr3 186076906 186077196 -31959962 - MER33 DNA MER1_type 0 324 2 262 278 76 42 chr3 186077445 186077574 -31959584 - MIR SINE MIR -47 161 27 2178 110 3 19 chr3 186077602 186077919 -31959239 + AluSx SINE Alu 1 312 0 222 302 12 12 chr3 186077979 186078065 -31959093 - MER5A DNA MER1_type -100 89 4 28 0 0 0 chr3 186078454 186078482 -31958676 + AT_rich Low_complexity Low_complexity 1 28 0 459 284 148 0 chr3 186079045 186079200 -31957958 - MER5A DNA MER1_type -3 186 9 533 226 7 29 chr3 186079465 186079602 -31957556 - MER63 DNA MER1_type -302 760 1 613 269 27 5 chr3 186080059 186080245 -31956913 - MIR SINE MIR -1 261 72 575 241 84 70 chr3 186080324 186080669 -31956489 - L1ME4a LINE L1 -152 5969 5620 371 258 135 12 chr3 186081613 186081776 -31955382 + MER5A DNA MER1_type 7 189 0 195 255 0 0 chr3 186081829 186081876 -31955282 - MIR SINE MIR -72 136 90 631 283 112 64 chr3 186082020 186082440 -31954718 + MLT1K LTR MaLR 143 582 -6 264 299 0 13 chr3 186082564 186082641 -31954517 + MLT1K LTR MaLR 189 264 -324 242 250 0 0 chr3 186082834 186082890 -31954268 + MLT1K LTR MaLR 522 577 -11 1119 236 116 58 chr3 186083102 186083534 -31953624 - LTR33A LTR ERVL -6 517 61 283 244 144 44 chr3 186084436 186084526 -31952632 - MLT1K LTR MaLR -342 246 148 325 309 59 7 chr3 186085171 186085307 -31951851 - L2 LINE L2 -14 3258 3116 1903 164 0 0 chr3 186085370 186085663 -31951495 - AluSx SINE Alu -19 293 1 2177 103 3 0 chr3 186085746 186086037 -31951121 + AluSc SINE Alu 1 292 -17 1118 164 5 61 chr3 186086445 186086527 -31950631 - MER45B DNA AcHobo -839 201 116 2286 89 0 17 chr3 186086527 186086829 -31950329 + AluSx SINE Alu 1 297 -15 1118 164 5 61 chr3 186086829 186086959 -31950199 - MER45B DNA AcHobo -924 116 1 391 349 48 0 chr3 186087063 186087229 -31949929 - MIR SINE MIR -86 176 3 593 236 0 0 chr3 186087358 186087485 -31949673 - MIR SINE MIR -59 203 77 1443 37 0 0 chr3 186087578 186087742 -31949416 + AluY SINE Alu 140 303 -8 2000 137 7 10 chr3 186087762 186088061 -31949097 + AluJb SINE Alu 9 306 -6 2198 34 0 15 chr3 186088234 186088503 -31948655 + L1PA4 LINE L1 5888 6152 -3 2223 114 7 3 chr3 186088562 186088868 -31948290 + AluSx SINE Alu 1 307 -5 2106 118 7 0 chr3 186088869 186089157 -31948001 + AluSx SINE Alu 1 290 -22 1548 221 116 57 chr3 186091158 186091660 -31945498 - Charlie7 DNA MER1_type -68 2544 1984 2168 131 16 0 chr3 186091660 186091966 -31945192 - AluSx SINE Alu -1 311 1 1548 221 116 57 chr3 186091966 186092186 -31944972 - Charlie7 DNA MER1_type -628 1984 1779 2133 135 3 0 chr3 186092252 186092563 -31944595 - AluSx SINE Alu 0 312 1 512 225 91 34 chr3 186092644 186092853 -31944305 - Charlie7 DNA MER1_type -2191 421 201 784 245 86 16 chr3 186094214 186094586 -31942572 - L1ME4a LINE L1 0 6121 5724 2241 91 14 3 chr3 186094788 186095085 -31942073 - AluSq SINE Alu -13 300 1 317 277 17 17 chr3 186095105 186095224 -31941934 - L2 LINE L2 0 3313 3195 5729 109 32 19 chr3 186096522 186097069 -31940089 - L1PA16 LINE L1 0 6166 5601 2174 134 10 0 chr3 186097069 186097376 -31939782 - AluSx SINE Alu -2 310 1 5729 109 32 19 chr3 186097376 186097762 -31939396 - L1PA16 LINE L1 -565 5601 5222 1479 167 89 4 chr3 186097764 186098034 -31939124 - AluJb SINE Alu -19 293 1 865 170 0 0 chr3 186098034 186098169 -31938989 - AluJb SINE Alu -177 135 1 2162 153 27 44 chr3 186098169 186098477 -31938681 - L1MB2 LINE L1 -280 5891 5590 2184 138 0 0 chr3 186098477 186098789 -31938369 - AluSx SINE Alu 0 312 1 2162 153 27 44 chr3 186098789 186098891 -31938267 - L1MB2 LINE L1 -581 5590 5488 1886 195 79 5 chr3 186099327 186099733 -31937425 + MER63B DNA MER1_type 1 436 0 22 35 0 0 chr3 186100287 186100316 -31936842 + AT_rich Low_complexity Low_complexity 1 29 0 2397 77 3 0 chr3 186102229 186102516 -31934642 - AluSp SINE Alu -25 288 1 1139 110 0 0 chr3 186103898 186104044 -31933114 + AluSg/x SINE Alu 148 293 -19 184 305 41 102 chr3 186104517 186104714 -31932444 + L2 LINE L2 2869 3053 -219 972 175 0 12 chr3 186104825 186104985 -31932173 - FRAM SINE Alu -19 157 1 215 196 0 22 chr3 186105041 186105087 -31932071 + L2 LINE L2 3265 3309 -4 202 188 0 94 chr3 186105107 186105171 -31931987 - L2 LINE L2 0 3313 3256 22 0 0 0 chr3 186108126 186108148 -31929010 + AT_rich Low_complexity Low_complexity 1 22 0 845 276 21 13 chr3 186108793 186109032 -31928126 + Charlie8 DNA MER1_type 26 266 -2151 2068 147 7 0 chr3 186109591 186109898 -31927260 - AluJb SINE Alu -3 309 1 453 265 34 20 chr3 186110004 186110151 -31927007 + MIR SINE MIR 48 196 -66 614 213 13 32 chr3 186110154 186110309 -31926849 - MER5B DNA MER1_type -2 176 25 376 209 9 45 chr3 186111320 186111430 -31925728 - MIR3 SINE MIR -8 200 95 387 41 0 0 chr3 186111611 186111660 -31925498 + (TG)n Simple_repeat Simple_repeat 2 50 0 192 77 0 0 chr3 186112026 186112052 -31925106 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 282 29 0 0 chr3 186112393 186112428 -31924730 + (TG)n Simple_repeat Simple_repeat 1 35 0 342 247 21 0 chr3 186112691 186112784 -31924374 - L1MC5 LINE L1 -158 7803 7709 23 33 0 0 chr3 186112801 186112831 -31924327 + AT_rich Low_complexity Low_complexity 1 30 0 577 319 18 13 chr3 186112888 186113117 -31924041 - MARNA DNA Mariner -102 484 255 2189 92 10 10 chr3 186113389 186113683 -31923475 + AluSx SINE Alu 1 294 -18 2449 63 0 10 chr3 186113786 186114089 -31923069 + AluY SINE Alu 1 300 -11 195 147 29 0 chr3 186115145 186115179 -31921979 + MIR SINE MIR 111 145 -117 1192 233 23 7 chr3 186115217 186115535 -31921623 + L1ME3A LINE L1 5569 5892 -278 704 188 65 65 chr3 186116925 186117019 -31920139 - MER5A DNA MER1_type -19 170 74 2490 78 0 0 chr3 186117019 186117315 -31919843 - AluSx SINE Alu -16 296 1 704 188 65 65 chr3 186117315 186117390 -31919768 - MER5A DNA MER1_type -114 75 1 518 192 60 54 chr3 186117400 186117567 -31919591 + MER5B DNA MER1_type 7 174 -4 205 247 65 0 chr3 186117653 186117730 -31919428 + MER5A DNA MER1_type 1 82 -107 508 226 30 43 chr3 186118012 186118176 -31918982 - MIR SINE MIR -70 192 31 668 185 219 0 chr3 186118245 186118391 -31918767 - MER45A DNA AcHobo 0 178 1 291 313 10 0 chr3 186118490 186118589 -31918569 + MIR SINE MIR 49 148 -60 627 255 211 0 chr3 186118676 186118880 -31918278 + MIR SINE MIR 16 262 0 36 23 0 0 chr3 186119349 186119392 -31917766 + AT_rich Low_complexity Low_complexity 1 43 0 2111 135 0 0 chr3 186119392 186119680 -31917478 - AluSx SINE Alu -24 288 1 182 300 71 0 chr3 186120016 186120086 -31917072 - L2 LINE L2 -8 3305 3231 2062 125 0 0 chr3 186120144 186120478 -31916680 + AluSg SINE Alu 1 334 0 2282 100 0 29 chr3 186122689 186122998 -31914160 - AluSg SINE Alu -5 305 6 596 262 24 12 chr3 186123174 186123342 -31913816 + MER5A DNA MER1_type 18 187 -2 438 291 201 10 chr3 186123946 186124145 -31913013 + MIR SINE MIR 14 250 -12 188 230 100 50 chr3 186127766 186127866 -31909292 + MIR3 SINE MIR 2 106 -102 2351 97 0 0 chr3 186127895 186128193 -31908965 + AluSg SINE Alu 1 298 -12 1623 215 68 23 chr3 186129055 186129539 -31907619 + Charlie4a DNA MER1_type 3 508 0 1490 189 4 4 chr3 186129864 186130145 -31907013 + L1 LINE L1 4855 5135 -1011 7631 87 23 4 chr3 186130327 186131542 -31905616 + L1MA1 LINE L1 5057 6295 -7 318 274 0 0 chr3 186131599 186131723 -31905435 + (CA)n Simple_repeat Simple_repeat 2 125 0 332 295 16 16 chr3 186131795 186131924 -31905234 + L3 LINE CR1 1151 1279 -298 762 258 74 0 chr3 186131992 186132221 -31904937 + MIR SINE MIR 15 260 -2 209 136 23 23 chr3 186132283 186132327 -31904831 + CT-rich Low_complexity Low_complexity 3 46 0 319 268 72 0 chr3 186132347 186132444 -31904714 - L2 LINE L2 -22 3250 3147 256 297 216 11 chr3 186132830 186133114 -31904044 - LTR33 LTR ERVL -90 431 90 1199 142 0 0 chr3 186133654 186133816 -31903342 + AluJb SINE Alu 129 290 -22 192 284 27 27 chr3 186135002 186135076 -31902082 + L3 LINE CR1 739 812 -765 283 274 111 33 chr3 186135434 186135587 -31901571 + MIR SINE MIR 48 212 -50 318 106 0 0 chr3 186138391 186138438 -31898720 + (A)n Simple_repeat Simple_repeat 1 47 0 400 213 21 0 chr3 186138888 186138982 -31898176 + MIR3 SINE MIR 109 204 -4 487 296 50 20 chr3 186139510 186139709 -31897449 + MIR SINE MIR 24 228 -34 2313 55 0 4 chr3 186140297 186140570 -31896588 + AluY SINE Alu 40 311 0 426 370 52 0 chr3 186141066 186141239 -31895919 + MIR3 SINE MIR 15 196 -12 2308 105 10 3 chr3 186141464 186141768 -31895390 + AluSg SINE Alu 1 306 -4 733 245 90 45 chr3 186142014 186142349 -31894809 - L1ME4a LINE L1 -212 5909 5560 242 255 92 41 chr3 186143193 186143291 -31893867 - L2 LINE L2 -8 3264 3162 185 226 49 108 chr3 186143554 186143656 -31893502 + MER5B DNA MER1_type 62 157 -21 214 370 10 0 chr3 186144181 186144281 -31892877 + MIR3 SINE MIR 103 203 -5 2252 105 3 16 chr3 186145607 186145922 -31891236 - AluSx SINE Alu 0 312 2 2611 247 42 11 chr3 186146128 186146888 -31890270 + MER20B DNA MER1_type 1 784 0 2140 115 0 7 chr3 186146907 186147203 -31889955 + AluSx SINE Alu 1 294 -18 296 277 158 0 chr3 186149269 186149370 -31887788 - MIR SINE MIR -61 147 31 233 351 14 0 chr3 186149448 186149522 -31887636 - L2 LINE L2 -62 3210 3136 1484 128 0 0 chr3 186150831 186151034 -31886124 + AluSx SINE Alu 1 203 -109 508 63 0 0 chr3 186151035 186151098 -31886060 + AluSp SINE Alu 70 132 -181 2306 97 13 0 chr3 186151100 186151400 -31885758 + AluSp SINE Alu 1 304 -9 2152 109 0 0 chr3 186151416 186151691 -31885467 + AluSx SINE Alu 6 280 -32 249 57 0 0 chr3 186151693 186151728 -31885430 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 221 116 0 23 chr3 186151906 186151949 -31885209 + (ATG)n Simple_repeat Simple_repeat 1 42 0 208 315 0 34 chr3 186152327 186152416 -31884742 + MIR SINE MIR 163 248 -14 2366 92 23 0 chr3 186152425 186152731 -31884427 + AluSp SINE Alu 1 313 0 207 319 75 0 chr3 186152740 186152834 -31884324 + MIR SINE MIR 81 181 -81 188 205 0 0 chr3 186153034 186153073 -31884085 - L3 LINE CR1 -11 1566 1528 2152 17 0 0 chr3 186153958 186154193 -31882965 - AluYa5 SINE Alu -3 308 74 182 191 21 0 chr3 186154803 186154850 -31882308 + (TA)n Simple_repeat Simple_repeat 2 49 0 391 255 67 7 chr3 186156130 186156279 -31880879 - MIR SINE MIR 0 262 105 2037 127 0 27 chr3 186156334 186156633 -31880525 + AluSx SINE Alu 1 291 -21 195 42 0 0 chr3 186156633 186156657 -31880501 + (TA)n Simple_repeat Simple_repeat 2 25 0 225 286 26 0 chr3 186156802 186156879 -31880279 - MIR SINE MIR -153 109 31 424 296 9 5 chr3 186156999 186157145 -31880013 - MIR3 SINE MIR -48 160 32 817 148 8 0 chr3 186157744 186157872 -31879286 + AluJo SINE Alu 1 129 -173 27 29 0 0 chr3 186157872 186157906 -31879252 + AT_rich Low_complexity Low_complexity 1 34 0 917 226 0 0 chr3 186157917 186158094 -31879064 + AluJo SINE Alu 130 306 -6 534 281 53 6 chr3 186158120 186158291 -31878867 + MIR SINE MIR 8 186 -76 248 268 155 0 chr3 186158355 186158452 -31878706 + MIR SINE MIR 136 247 -15 432 283 48 21 chr3 186159320 186159507 -31877651 + MIR SINE MIR 21 212 -50 513 273 106 100 chr3 186160618 186160798 -31876360 + MLT1J LTR MaLR 35 212 -299 2241 117 3 0 chr3 186160798 186161105 -31876053 + AluSx SINE Alu 1 308 -4 513 273 106 100 chr3 186161105 186161385 -31875773 + MLT1J LTR MaLR 212 498 -13 587 307 28 24 chr3 186161405 186161659 -31875499 + MIR SINE MIR 2 256 -6 393 179 155 0 chr3 186162698 186162782 -31874376 + MER5B DNA MER1_type 26 122 -56 3760 229 15 50 chr3 186162782 186162946 -31874212 + L1ME1 LINE L1 5167 5335 -831 2139 122 7 0 chr3 186162946 186163240 -31873918 + AluSg SINE Alu 1 296 -14 3760 229 15 50 chr3 186163240 186163396 -31873762 + L1ME1 LINE L1 5335 5495 -671 194 0 39 0 chr3 186163396 186163422 -31873736 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3760 229 15 50 chr3 186163422 186164115 -31873043 + L1ME1 LINE L1 5495 6162 -4 706 249 80 0 chr3 186164374 186164575 -31872583 - MIR SINE MIR 0 262 46 666 361 36 23 chr3 186164581 186164974 -31872184 + L2 LINE L2 817 1214 -2100 196 324 92 14 chr3 186164974 186165116 -31872042 - L2 LINE L2 -2936 378 226 538 260 155 11 chr3 186165452 186165633 -31871525 + MER63A DNA MER1_type 2 208 -2 1910 108 0 70 chr3 186167076 186167391 -31869767 + AluSx SINE Alu 1 293 -19 2425 103 0 0 chr3 186167423 186167734 -31869424 + AluSx SINE Alu 1 311 -1 548 217 128 6 chr3 186168609 186168789 -31868369 + MIR SINE MIR 42 243 -19 1368 234 46 18 chr3 186169074 186169577 -31867581 + MER20B DNA MER1_type 184 781 -2 351 301 114 16 chr3 186170204 186170327 -31866831 - L2 LINE L2 0 3272 3138 379 253 128 69 chr3 186170394 186170698 -31866460 - L1ME4a LINE L1 0 6121 5800 284 303 39 39 chr3 186170758 186170913 -31866245 - L2 LINE L2 0 3313 3159 2198 186 58 5 chr3 186170944 186171357 -31865801 + MLT1C LTR MaLR 1 435 -32 389 73 162 44 chr3 186171357 186171425 -31865733 - MADE1 DNA Mariner 0 80 5 301 29 0 0 chr3 186171429 186171463 -31865695 + MLT1B LTR MaLR 357 390 0 231 189 90 26 chr3 186171670 186171769 -31865389 - MIR SINE MIR -63 145 77 264 293 12 0 chr3 186171873 186171955 -31865203 - L2 LINE L2 -550 2764 2682 598 261 36 6 chr3 186172283 186172448 -31864710 - MER5B DNA MER1_type 0 178 9 271 324 56 14 chr3 186173390 186173532 -31863626 - L3 LINE CR1 -67 1510 1363 847 242 51 0 chr3 186173713 186173928 -31863230 + MIR SINE MIR 16 241 -21 601 325 42 28 chr3 186174609 186174892 -31862266 - L3 LINE CR1 -179 1398 1112 338 0 24 0 chr3 186174954 186174996 -31862162 + (TG)n Simple_repeat Simple_repeat 1 43 0 522 278 84 56 chr3 186175402 186175768 -31861390 - MLT1I LTR MaLR -20 389 56 1029 220 198 42 chr3 186176821 186177271 -31859887 + LTR33 LTR ERVL 2 521 0 429 277 68 12 chr3 186177328 186177514 -31859644 + MIR SINE MIR 18 216 -46 270 293 47 38 chr3 186177924 186178030 -31859128 + MIR SINE MIR 37 143 -65 1408 199 123 18 chr3 186178388 186178795 -31858363 - MLT1D LTR MaLR 0 505 12 209 324 63 27 chr3 186179963 186180074 -31857084 - L2 LINE L2 -22 3250 3136 844 271 79 6 chr3 186180348 186180673 -31856485 + L2 LINE L2 2728 3069 -244 321 222 16 16 chr3 186180716 186180842 -31856316 + (TCTA)n Simple_repeat Simple_repeat 1 126 0 228 304 0 43 chr3 186180872 186180941 -31856217 + L2 LINE L2 3119 3184 -88 3489 149 7 25 chr3 186181032 186181589 -31855569 - MER44D DNA MER2_type -1 604 3 24 0 0 0 chr3 186181590 186181614 -31855544 + AT_rich Low_complexity Low_complexity 1 24 0 321 298 78 31 chr3 186182235 186182426 -31854732 + L1ME4a LINE L1 5378 5577 -544 410 276 27 68 chr3 186182435 186182619 -31854539 + L1ME4a LINE L1 5655 5830 -291 1728 160 14 14 chr3 186182619 186182907 -31854251 + AluJo SINE Alu 1 288 -24 410 276 27 68 chr3 186182907 186182943 -31854215 + L1ME4a LINE L1 5830 5866 -255 357 103 191 15 chr3 186183060 186183128 -31854030 - MADE1 DNA Mariner 0 80 1 381 276 22 37 chr3 186183809 186183943 -31853215 + L2 LINE L2 1870 2001 -1313 2350 86 23 0 chr3 186184673 186184977 -31852181 + AluSp SINE Alu 3 313 0 2304 118 0 0 chr3 186185043 186185349 -31851809 - AluSg SINE Alu -2 308 3 192 40 0 0 chr3 186185639 186185664 -31851494 + (CA)n Simple_repeat Simple_repeat 2 26 0 330 200 53 27 chr3 186185830 186185905 -31851253 - Tigger5 DNA MER2_type -3 2320 2244 * 431 197 20 17 chr3 186185902 186186042 -31851116 - Tigger5 DNA MER2_type -2129 194 1 480 230 43 29 chr3 186186045 186186184 -31850974 - MIR SINE MIR -78 184 44 1314 151 24 5 chr3 186186210 186186415 -31850743 + MER3 DNA MER1_type 1 209 0 22 56 0 0 chr3 186187076 186187112 -31850046 + AT_rich Low_complexity Low_complexity 1 36 0 665 260 18 12 chr3 186188210 186188379 -31848779 - MER5B DNA MER1_type 0 178 9 264 270 16 0 chr3 186188419 186188482 -31848676 + CT-rich Low_complexity Low_complexity 5 68 0 2688 109 28 10 chr3 186188612 186189006 -31848152 - Tigger2 DNA MER2_type -1 2717 2317 415 316 107 23 chr3 186189114 186189391 -31847767 - L1MC/D LINE L1 -362 5759 5512 283 234 78 0 chr3 186189689 186189753 -31847405 - MER5A DNA MER1_type -80 109 41 197 301 82 0 chr3 186189790 186189863 -31847295 + L2 LINE L2 2912 2990 -282 366 273 14 84 chr3 186189865 186190008 -31847150 + MER5B DNA MER1_type 2 134 -44 255 368 53 26 chr3 186190192 186190344 -31846814 + L2 LINE L2 3117 3272 0 223 347 81 32 chr3 186190419 186190512 -31846646 - MIR SINE MIR -62 146 44 2304 95 3 7 chr3 186190512 186190817 -31846341 - AluSc SINE Alu -5 304 1 223 347 81 32 chr3 186190817 186190847 -31846311 - MIR SINE MIR -164 44 17 1294 212 71 77 chr3 186191388 186191816 -31845342 - MER20B DNA MER1_type 0 783 357 2502 84 0 0 chr3 186191816 186192125 -31845033 - AluSq SINE Alu -4 309 1 1294 212 71 77 chr3 186192125 186192177 -31844981 - MER20B DNA MER1_type -426 357 306 4904 164 30 28 chr3 186192190 186193515 -31843643 - L1MB7 LINE L1 -22 6162 4851 303 281 0 0 chr3 186193643 186193725 -31843433 - L1MB7 LINE L1 -1288 4858 4777 942 261 84 14 chr3 186193726 186194010 -31843148 - MER20B DNA MER1_type -474 309 6 287 236 147 123 chr3 186194246 186194572 -31842586 + L2 LINE L2 2939 3272 0 240 111 0 0 chr3 186194766 186194802 -31842356 + (CAT)n Simple_repeat Simple_repeat 1 36 0 242 295 45 32 chr3 186195193 186195349 -31841809 - L1ME4a LINE L1 0 6121 5964 2263 94 0 3 chr3 186196190 186196478 -31840680 + AluSg SINE Alu 1 287 -23 185 0 40 0 chr3 186196478 186196503 -31840655 + (TA)n Simple_repeat Simple_repeat 2 27 0 1326 219 144 14 chr3 186196514 186196784 -31840374 - L1ME4a LINE L1 -8 6113 5879 2014 169 45 0 chr3 186196784 186197116 -31840042 - MER7A DNA MER2_type 0 346 2 1326 219 144 14 chr3 186197116 186197269 -31839889 - L1ME4a LINE L1 -242 5879 5635 331 206 0 0 chr3 186197406 186197469 -31839689 + MIR3 SINE MIR 105 167 -41 309 339 76 0 chr3 186197632 186197815 -31839343 + MIR SINE MIR 12 208 -54 311 278 120 19 chr3 186198699 186198807 -31838351 - L2 LINE L2 -1 3271 3153 242 252 78 58 chr3 186198845 186198875 -31838283 + MIR3 SINE MIR 2 30 -178 872 239 47 31 chr3 186198875 186199130 -31838028 + MIR SINE MIR 4 262 0 242 252 78 58 chr3 186199130 186199202 -31837956 + MIR3 SINE MIR 30 106 -102 651 191 39 117 chr3 186199202 186199389 -31837769 + ERVL LTR ERVL 4995 5162 -602 2179 117 0 49 chr3 186199389 186199714 -31837444 + AluSx SINE Alu 1 309 -3 651 191 39 117 chr3 186199714 186199756 -31837402 + ERVL LTR ERVL 5162 5206 -558 180 286 0 91 chr3 186199758 186199835 -31837323 + MIR3 SINE MIR 112 181 -27 25 31 0 0 chr3 186200770 186200802 -31836356 + AT_rich Low_complexity Low_complexity 1 32 0 409 263 54 47 chr3 186201593 186201918 -31835240 + L1P1 LINE L1 5188 5518 -637 196 261 57 57 chr3 186202492 186202580 -31834578 + L2 LINE L2 3145 3232 -40 379 340 22 22 chr3 186202726 186202930 -31834228 + MIR SINE MIR 21 217 -45 6619 97 6 2 chr3 186202994 186203950 -31833208 + L1PB1 LINE L1 5192 6150 -1 1868 157 0 17 chr3 186204066 186204365 -31832793 - AluSx SINE Alu -18 294 1 2445 89 0 9 chr3 186204709 186205024 -31832134 - AluSx SINE Alu 0 312 1 345 261 187 22 chr3 186205679 186205813 -31831345 - MIR3 SINE MIR -17 191 36 348 289 186 6 chr3 186205905 186206061 -31831097 + MIR SINE MIR 31 214 -48 216 0 0 0 chr3 186206250 186206274 -31830884 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 315 322 29 53 chr3 186207329 186207500 -31829658 - MIR3 SINE MIR -25 183 17 219 146 0 0 chr3 186208115 186208156 -31829002 + (A)n Simple_repeat Simple_repeat 1 41 0 25 0 0 0 chr3 186208289 186208314 -31828844 + AT_rich Low_complexity Low_complexity 1 25 0 19657 30 1 0 chr3 186208314 186211299 -31825859 - L1PA3 LINE L1 -3 6152 3167 1655 163 36 11 chr3 186211477 186211793 -31825365 + AluJb SINE Alu 1 323 0 1003 97 8 8 chr3 186212158 186212292 -31824866 - L1PB3 LINE L1 -11 6143 6010 2203 129 0 6 chr3 186213082 186213393 -31823765 + AluSg SINE Alu 1 309 -1 437 262 152 8 chr3 186213559 186213730 -31823428 + MIR SINE MIR 4 197 -62 509 223 102 38 chr3 186216114 186216271 -31820887 + MIR3 SINE MIR 2 168 -40 205 284 75 30 chr3 186216497 186216564 -31820594 + MIR SINE MIR 83 152 -56 476 313 31 51 chr3 186216945 186217140 -31820018 + MIR3 SINE MIR 15 205 -3 403 273 29 43 chr3 186218025 186218164 -31818994 - MER20 DNA MER1_type -21 198 62 373 292 31 23 chr3 186218462 186218617 -31818541 - MIR3 SINE MIR -61 147 13 2921 13 0 0 chr3 186218640 186218957 -31818201 + AluYb8 SINE Alu 1 317 -1 416 266 9 9 chr3 186219816 186219925 -31817233 + MIR SINE MIR 72 180 -82 212 344 41 16 chr3 186220094 186220216 -31816942 - MIR3 SINE MIR -3 205 81 236 319 96 22 chr3 186223028 186223163 -31813995 - MIR SINE MIR -50 212 68 1054 209 5 14 chr3 186223596 186223807 -31813351 + MER3 DNA MER1_type 1 209 0 202 362 43 0 chr3 186224258 186224352 -31812806 + MIR SINE MIR 157 254 -8 269 310 150 38 chr3 186224794 186224976 -31812182 + MIR3 SINE MIR 1 202 -6 24 53 0 0 chr3 186226893 186226931 -31810227 + GC_rich Low_complexity Low_complexity 1 38 0 215 303 154 31 chr3 186227985 186228147 -31809011 + MIR SINE MIR 81 262 0 312 326 52 41 chr3 186228813 186229013 -31808145 + MIR SINE MIR 17 216 -46 413 258 17 73 chr3 186230314 186230492 -31806666 - L2 LINE L2 -37 3276 3109 1508 207 52 3 chr3 186231283 186231645 -31805513 + MER113 DNA MER1_type? 91 470 -51 552 258 145 6 chr3 186231646 186231805 -31805353 - MER5A DNA MER1_type 0 189 9 183 270 79 16 chr3 186231858 186231921 -31805237 - MIR SINE MIR -99 163 97 221 328 16 0 chr3 186231957 186232018 -31805140 - L2 LINE L2 -27 3286 3225 364 312 8 16 chr3 186232265 186232390 -31804768 - MLT1I LTR MaLR -19 390 267 455 291 102 24 chr3 186232928 186233134 -31804024 - MIR SINE MIR -6 256 35 372 340 96 5 chr3 186233680 186233868 -31803290 + MIR SINE MIR 10 214 -48 265 348 9 0 chr3 186233947 186234062 -31803096 + MIR3 SINE MIR 65 180 -28 4143 163 30 4 chr3 186286431 186287143 -31750015 - L1MB3 LINE L1 -4 6179 5450 211 143 0 0 chr3 186287358 186287393 -31749765 - L2 LINE L2 -7 3265 3231 1331 254 126 56 chr3 186287670 186288131 -31749027 - MLT1K LTR MaLR -82 506 14 235 268 122 0 chr3 186288662 186288744 -31748414 - MLT1L LTR MaLR -335 280 189 319 296 51 42 chr3 186289034 186289200 -31747958 + MIR SINE MIR 16 180 -65 450 306 37 4 chr3 186289605 186289777 -31747381 + MIR SINE MIR 73 250 -12 516 308 87 0 chr3 186290639 186290811 -31746347 + MIR3 SINE MIR 16 202 -6 2423 93 0 0 chr3 186292184 186292494 -31744664 - AluY SINE Alu -1 310 1 2242 95 30 13 chr3 186292526 186292830 -31744328 - AluSc SINE Alu 0 309 1 227 204 0 0 chr3 186293156 186293205 -31743953 - MLT1L LTR MaLR -533 82 34 233 316 13 0 chr3 186293233 186293312 -31743846 + MIR SINE MIR 66 145 -117 548 282 117 48 chr3 186293409 186293725 -31743433 + MLT1J LTR MaLR 242 579 -36 350 327 74 31 chr3 186294878 186295040 -31742118 - L2 LINE L2 -2 3270 3102 533 265 122 17 chr3 186295851 186296081 -31741077 + MIR SINE MIR 7 260 -2 682 316 101 16 chr3 186296699 186297255 -31739903 - L1ME3A LINE L1 -310 5860 5258 328 146 0 24 chr3 186297332 186297414 -31739744 + (TTTC)n Simple_repeat Simple_repeat 3 82 0 1745 155 44 10 chr3 186297416 186297712 -31739446 - AluJb SINE Alu -6 306 1 526 220 80 72 chr3 186297785 186297965 -31739193 - L1ME3A LINE L1 -12 6158 5974 2443 209 40 61 chr3 186297965 186298543 -31738615 - MLT1F1 LTR MaLR 0 567 2 526 220 80 72 chr3 186298543 186298612 -31738546 - L1ME3A LINE L1 -196 5974 5907 2356 91 0 10 chr3 186298612 186298919 -31738239 - AluY SINE Alu -7 304 1 309 307 0 23 chr3 186299055 186299143 -31738015 - L2 LINE L2 -704 2610 2525 1228 183 14 9 chr3 186299333 186299552 -31737606 + AluJb SINE Alu 1 220 -92 266 262 118 37 chr3 186299693 186299880 -31737278 - L1ME3A LINE L1 -2196 3950 3749 1311 301 27 17 chr3 186299949 186300358 -31736800 + LTR16C LTR ERVL 79 491 0 421 342 28 38 chr3 186300358 186300772 -31736386 - L1ME3A LINE L1 -2394 3752 3341 631 278 24 24 chr3 186300772 186300981 -31736177 - MER63A DNA MER1_type -1 209 1 421 342 28 38 chr3 186300981 186300993 -31736165 - L1ME3A LINE L1 -2805 3341 3330 2065 244 78 85 chr3 186300993 186301448 -31735710 + L2 LINE L2 2054 2510 -803 2444 77 0 13 chr3 186301448 186301760 -31735398 + AluY SINE Alu 1 308 -3 2065 244 78 85 chr3 186301760 186301963 -31735195 + L2 LINE L2 2510 2713 -600 1746 155 0 67 chr3 186301963 186302279 -31734879 - AluJb SINE Alu -17 295 1 2065 244 78 85 chr3 186302279 186302316 -31734842 + L2 LINE L2 2713 2749 -564 2185 126 3 10 chr3 186302316 186302625 -31734533 - AluSx SINE Alu -5 307 1 2065 244 78 85 chr3 186302625 186302908 -31734250 + L2 LINE L2 2749 3009 -304 377 246 49 33 chr3 186302930 186303052 -31734106 + L2 LINE L2 3168 3291 -22 701 267 114 47 chr3 186304783 186305143 -31732015 + MLT1J2 LTR MaLR 67 450 0 30 0 0 0 chr3 186306530 186306560 -31730598 + AT_rich Low_complexity Low_complexity 1 30 0 31637 100 10 28 chr3 186306624 186307813 -31729345 - L1PA7 LINE L1 -3 6466 5257 2488 63 0 38 chr3 186307813 186308131 -31729027 + AluY SINE Alu 1 306 -5 31637 100 10 28 chr3 186308131 186313216 -31723942 - L1PA7 LINE L1 -1212 5257 213 2486 80 0 0 chr3 186313396 186313697 -31723461 + AluSc SINE Alu 1 301 -8 1079 281 98 0 chr3 186313697 186314003 -31723155 + MLT1I LTR MaLR 74 409 0 1167 124 22 0 chr3 186314699 186314877 -31722281 + AluSq SINE Alu 121 302 -11 2112 122 9 118 chr3 186316618 186316674 -31720484 + MLT1B LTR MaLR 4 64 -326 2482 114 121 16 chr3 186316674 186317061 -31720097 + MSTA LTR MaLR 1 428 0 2112 122 9 118 chr3 186317061 186317274 -31719884 + MLT1B LTR MaLR 64 211 -179 1903 126 60 7 chr3 186317274 186317559 -31719599 + AluSx SINE Alu 1 300 -12 2112 122 9 118 chr3 186317559 186317722 -31719436 + MLT1B LTR MaLR 211 390 0 1428 139 8 13 chr3 186317884 186318121 -31719037 - AluSg/x SINE Alu -10 302 67 2124 126 3 3 chr3 186318239 186318541 -31718617 - AluSx SINE Alu -10 302 1 271 209 82 55 chr3 186318619 186318729 -31718429 - HAL1 LINE L1 -15 2492 2380 206 280 24 32 chr3 186318779 186318839 -31718319 + (TATATG)n Simple_repeat Simple_repeat 2 61 -64 2040 155 0 0 chr3 186318839 186319142 -31718016 + AluSx SINE Alu 1 303 -9 206 280 24 32 chr3 186319142 186319206 -31717952 + (TATATG)n Simple_repeat Simple_repeat 61 125 0 2284 115 0 0 chr3 186320017 186320313 -31716845 + AluSx SINE Alu 1 296 -16 950 301 173 18 chr3 186320688 186321712 -31715446 - L2 LINE L2 0 3313 2133 280 313 102 7 chr3 186322654 186322801 -31714357 - MIR3 SINE MIR -7 201 41 730 201 0 43 chr3 186322962 186323101 -31714057 + AluJo SINE Alu 3 135 -177 260 254 0 0 chr3 186323140 186323203 -31713955 - L1ME4a LINE L1 -113 6008 5946 503 252 39 58 chr3 186323252 186323458 -31713700 - L1ME4a LINE L1 -301 5820 5619 330 345 36 14 chr3 186323694 186323833 -31713325 + L2 LINE L2 3172 3313 0 2174 127 0 16 chr3 186323889 186324205 -31712953 - AluSx SINE Alu 0 312 2 23 0 0 0 chr3 186324883 186324906 -31712252 + AT_rich Low_complexity Low_complexity 1 23 0 802 271 181 16 chr3 186325319 186325766 -31711392 + LTR33 LTR ERVL 1 521 0 2229 118 3 0 chr3 186325980 186326286 -31710872 + AluSg SINE Alu 1 307 -3 651 186 25 0 chr3 186328308 186328426 -31708732 + MER20 DNA MER1_type 1 121 -98 407 189 18 63 chr3 186328584 186328695 -31708463 - MER20 DNA MER1_type 0 219 114 184 265 20 0 chr3 186328695 186328744 -31708414 + MIR SINE MIR 96 145 -63 676 274 63 39 chr3 186328748 186329033 -31708125 - L2 LINE L2 -2 3311 3020 261 0 0 0 chr3 186329392 186329421 -31707737 + (CA)n Simple_repeat Simple_repeat 2 30 0 192 278 100 22 chr3 186333900 186333990 -31703168 + MIR SINE MIR 37 133 -75 2186 96 7 0 chr3 186334049 186334342 -31702816 - AluY SINE Alu -16 295 1 354 45 0 0 chr3 186334443 186334487 -31702671 + (CA)n Simple_repeat Simple_repeat 2 45 0 827 287 91 10 chr3 186334487 186334794 -31702364 - L1MC4a LINE L1 -1863 5945 5614 333 319 18 0 chr3 186334826 186334939 -31702219 + MIR3 SINE MIR 73 187 -21 261 297 10 30 chr3 186335544 186335645 -31701513 - MIR3 SINE MIR -8 200 102 2000 123 76 25 chr3 186335963 186336320 -31700838 + THE1C LTR MaLR 1 375 0 30466 124 8 59 chr3 186336772 186343275 -31693883 - L1PA8 LINE L1 -6 6166 2 184 284 108 0 chr3 186343278 186343352 -31693806 - MER5B DNA MER1_type -37 141 60 294 234 31 62 chr3 186343648 186343776 -31693382 + L2 LINE L2 3180 3303 -10 270 0 0 0 chr3 186343835 186343865 -31693293 + (CAAT)n Simple_repeat Simple_repeat 4 33 0 1102 189 4 44 chr3 186343941 186344169 -31692989 - MER20 DNA MER1_type 0 219 1 405 0 0 0 chr3 186344233 186344278 -31692880 + (TG)n Simple_repeat Simple_repeat 1 45 0 719 274 43 14 chr3 186344566 186344774 -31692384 + MIR SINE MIR 14 227 -35 1508 137 96 0 chr3 186344975 186345268 -31691890 - MER33 DNA MER1_type -3 321 1 229 181 0 56 chr3 186345393 186345465 -31691693 + CT-rich Low_complexity Low_complexity 4 71 0 633 250 58 0 chr3 186346509 186346697 -31690461 - MIR SINE MIR -24 238 40 250 284 15 0 chr3 186346767 186346834 -31690324 + L2 LINE L2 3195 3262 -51 864 260 47 35 chr3 186348833 186349087 -31688071 - MIR SINE MIR 0 262 6 1477 186 71 28 chr3 186349429 186349751 -31687407 - MLT1C LTR MaLR 0 467 132 683 192 14 103 chr3 186349755 186349969 -31687189 - MLT1C LTR MaLR -267 200 6 182 273 50 30 chr3 186350281 186350380 -31686778 + MER5B DNA MER1_type 1 101 -77 306 263 7 102 chr3 186350598 186350648 -31686510 + MIR SINE MIR 108 161 -101 1919 147 31 0 chr3 186350648 186350934 -31686224 - AluJb SINE Alu -17 295 1 306 263 7 102 chr3 186350934 186351020 -31686138 + MIR SINE MIR 161 231 -31 1363 211 94 11 chr3 186351680 186352040 -31685118 - MLT1B LTR MaLR 0 390 1 358 304 56 0 chr3 186352314 186352439 -31684719 + MER5B DNA MER1_type 3 134 -44 2657 181 13 19 chr3 186352808 186353333 -31683825 - L1MB5 LINE L1 -13 6161 5640 273 271 36 95 chr3 186353345 186353379 -31683779 - MIR SINE MIR -63 145 111 2778 90 2 20 chr3 186353379 186353779 -31683379 + L1PB2 LINE L1 5759 6151 0 273 271 36 95 chr3 186353779 186353891 -31683267 - MIR SINE MIR -97 111 5 10205 53 26 1 chr3 186354051 186356132 -31681026 - L1PA4 LINE L1 0 6155 4042 44896 38 10 3 chr3 186356466 186362207 -31674951 - L1P1 LINE L1 -391 5764 4 849 233 55 42 chr3 186362684 186362992 -31674166 - MLT1G LTR MaLR -293 302 1 597 221 0 34 chr3 186363172 186363321 -31673837 - L2 LINE L2 0 3313 3170 747 220 83 28 chr3 186363324 186363542 -31673616 - MIR SINE MIR -31 231 2 381 287 39 8 chr3 186363548 186363677 -31673481 - MIR3 SINE MIR -24 184 52 352 276 0 73 chr3 186364643 186364766 -31672392 + MER91B DNA MER1_type 2 115 -75 330 281 21 0 chr3 186364796 186364892 -31672266 + MER91B DNA MER1_type 90 187 -3 789 214 25 0 chr3 186365025 186365184 -31671974 - MER5B DNA MER1_type -15 163 1 263 253 25 13 chr3 186365194 186365273 -31671885 + (TGGA)n Simple_repeat Simple_repeat 1 80 0 329 332 15 52 chr3 186365312 186365580 -31671578 + L2 LINE L2 2807 3064 -208 2724 85 95 5 chr3 186365857 186366268 -31670890 - LTR7 LTR ERV1 -2 448 1 2426 101 45 13 chr3 186366268 186366646 -31670512 - HERVH LTR ERV1 0 7713 7324 1358 129 23 9 chr3 186366646 186366863 -31670295 - HERVH LTR ERV1 -1894 5819 5600 4332 146 8 1 chr3 186366864 186367522 -31669636 - HERVH LTR ERV1 -2564 5149 4488 28053 90 14 17 chr3 186367524 186371529 -31665629 - HERVH LTR ERV1 -3720 3993 1 2737 85 95 7 chr3 186371531 186371943 -31665215 - LTR7 LTR ERV1 -2 448 1 333 316 72 7 chr3 186372051 186372190 -31664968 - MIR3 SINE MIR -23 185 38 304 310 134 0 chr3 186372742 186372990 -31664168 + MER102a DNA MER1_type 29 326 -4 216 301 24 41 chr3 186373443 186373566 -31663592 + MIR3 SINE MIR 4 124 -84 809 289 67 12 chr3 186373828 186374157 -31663001 - L1MC4a LINE L1 -1907 5901 5555 810 208 86 13 chr3 186374317 186374702 -31662456 + LTR54B LTR ERV1 12 453 -45 247 167 21 0 chr3 186374774 186374822 -31662336 + LTR54 LTR ERV1 462 510 0 1004 122 0 0 chr3 186375306 186375437 -31661721 - AluJo SINE Alu -20 292 162 3319 50 0 104 chr3 186375438 186375938 -31661220 - LTR7 LTR ERV1 -2 448 1 16464 64 6 1 chr3 186375938 186378041 -31659117 - HERVH LTR ERV1 0 7713 5600 4518 139 0 1 chr3 186378042 186378705 -31658453 - HERVH LTR ERV1 -2564 5149 4488 3319 123 4 6 chr3 186378707 186379210 -31657948 - HERVH LTR ERV1 -3720 3993 3492 880 130 34 0 chr3 186379200 186379346 -31657812 - HERVH LTR ERV1 -4423 3290 3140 * 17246 94 18 32 chr3 186379340 186382484 -31654674 - HERVH LTR ERV1 -4726 2987 1 3419 52 0 108 chr3 186382486 186382988 -31654170 - LTR7 LTR ERV1 -2 448 1 884 175 24 30 chr3 186382988 186383154 -31654004 - AluJo SINE Alu -145 167 3 306 208 14 56 chr3 186383990 186384062 -31653096 + MER5B DNA MER1_type 41 109 -69 210 182 30 61 chr3 186384362 186384461 -31652697 + (TTTA)n Simple_repeat Simple_repeat 1 96 0 1437 292 65 20 chr3 186385081 186385591 -31651567 - MER115 DNA AcHobo -39 654 122 2312 198 29 7 chr3 186385613 186386067 -31651091 - L1MD3 LINE L1 0 7995 7532 311 180 16 16 chr3 186386121 186386182 -31650976 - Charlie8 DNA MER1_type -989 1428 1368 441 152 25 13 chr3 186386683 186386762 -31650396 - MLT1I LTR MaLR 0 409 330 383 288 209 28 chr3 186386887 186387102 -31650056 - MLT1I LTR MaLR -149 260 7 2561 164 107 39 chr3 186387210 186387697 -31649461 + MLT2B1 LTR ERVL 1 520 0 1816 117 8 4 chr3 186388093 186388350 -31648808 + AluSg SINE Alu 1 258 -52 2238 86 3 30 chr3 186388480 186388784 -31648374 - AluY SINE Alu -15 296 1 329 288 50 86 chr3 186388823 186389101 -31648057 + L3 LINE CR1 1001 1268 -309 262 376 57 25 chr3 186390116 186390395 -31646763 + L2 LINE L2 2044 2331 -983 212 340 87 39 chr3 186391142 186391245 -31645913 + L2 LINE L2 3144 3251 -21 21 82 0 0 chr3 186392423 186392472 -31644686 + AT_rich Low_complexity Low_complexity 1 49 0 625 309 37 0 chr3 186392787 186392978 -31644180 - HAL1 LINE L1 -1612 895 698 1612 232 46 24 chr3 186392978 186393388 -31643770 - MLT1D LTR MaLR -86 419 1 2778 111 5 11 chr3 186393418 186393795 -31643363 - THE1C LTR MaLR 0 375 1 33 56 0 0 chr3 186393967 186394021 -31643137 + AT_rich Low_complexity Low_complexity 1 54 0 1974 138 0 3 chr3 186394076 186394366 -31642792 - AluSx SINE Alu -2 310 22 2184 100 10 13 chr3 186394933 186395234 -31641924 + AluSp SINE Alu 1 300 -13 1123 310 109 0 chr3 186396445 186396894 -31640264 + HAL1 LINE L1 4 501 -2006 1206 197 155 60 chr3 186396904 186397295 -31639863 - MLT1G3 LTR MaLR 0 530 115 6632 57 5 7 chr3 186398002 186398826 -31638332 - L1PA7 LINE L1 0 6154 5333 2254 95 7 0 chr3 186399394 186399689 -31637469 - AluY SINE Alu -14 297 1 22 56 0 0 chr3 186399691 186399727 -31637431 + AT_rich Low_complexity Low_complexity 1 36 0 2048 104 42 36 chr3 186399875 186400206 -31636952 - AluSx SINE Alu 0 333 1 1241 151 4 27 chr3 186400423 186400648 -31636510 + AluJb SINE Alu 93 312 0 323 317 92 12 chr3 186401201 186401365 -31635793 + L2 LINE L2 3091 3267 -5 229 203 17 17 chr3 186401986 186402045 -31635113 - MIR SINE MIR -10 252 194 1808 178 3 7 chr3 186402145 186402454 -31634704 + AluJb SINE Alu 1 308 -4 3963 112 26 3 chr3 186403184 186403764 -31633394 + Tigger1 DNA MER2_type 713 1305 -1113 345 204 0 0 chr3 186403761 186403815 -31633343 + Tigger1 DNA MER2_type 2363 2416 -2 * 2530 134 36 67 chr3 186405065 186405511 -31631647 + MSTB1 LTR MaLR 1 432 0 340 179 0 0 chr3 186406011 186406067 -31631091 - L2 LINE L2 -13 3300 3245 678 271 61 0 chr3 186406375 186406556 -31630602 - MIR SINE MIR -20 242 51 825 316 25 0 chr3 186407209 186407453 -31629705 + MIR SINE MIR 13 262 0 271 262 83 60 chr3 186408120 186408288 -31628870 + MIR SINE MIR 47 218 -44 457 296 66 33 chr3 186408436 186408649 -31628509 + MIR SINE MIR 40 259 -3 2551 98 48 28 chr3 186409106 186409463 -31627695 - THE1B LTR MaLR 0 364 1 228 227 0 0 chr3 186409942 186409986 -31627172 + (CA)n Simple_repeat Simple_repeat 1 44 0 210 208 0 0 chr3 186410063 186410111 -31627047 + CT-rich Low_complexity Low_complexity 4 51 0 459 0 0 0 chr3 186410745 186410796 -31626362 + (CA)n Simple_repeat Simple_repeat 1 51 0 415 312 101 20 chr3 186412034 186412233 -31624925 + MIR SINE MIR 33 247 -15 1750 269 105 38 chr3 186412314 186413162 -31623996 + HsTC2b DNA Tc2 11 915 0 180 229 0 0 chr3 186413275 186413310 -31623848 - L3 LINE CR1 -5 1572 1538 5977 122 19 13 chr3 186413322 186415021 -31622137 + L1MA3 LINE L1 4440 6148 -157 843 154 0 0 chr3 186415022 186415139 -31622019 + FLAM_C SINE Alu 2 118 -25 1031 106 99 0 chr3 186415139 186415300 -31621858 + L1MA3 LINE L1 6127 6303 -2 2214 85 20 7 chr3 186416516 186416821 -31620337 + AluY SINE Alu 1 309 -2 180 241 85 99 chr3 186417165 186417306 -31619852 - MIR SINE MIR 0 262 124 461 219 0 41 chr3 186417665 186417788 -31619370 - LTR33 LTR ERVL -2 519 402 279 219 85 0 chr3 186417814 186417896 -31619262 - LTR33 LTR ERVL -429 92 4 402 329 57 5 chr3 186418509 186418692 -31618466 + MIR SINE MIR 5 192 -63 2143 90 0 43 chr3 186419687 186419986 -31617172 + AluY SINE Alu 1 286 -25 5465 251 118 29 chr3 186420113 186422453 -31614705 + L2 LINE L2 753 3302 -11 207 69 0 0 chr3 186422453 186422482 -31614676 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 5465 251 118 29 chr3 186422482 186422495 -31614663 + L2 LINE L2 3302 3312 -1 487 286 80 36 chr3 186422672 186422896 -31614262 - MIR SINE MIR -9 253 20 204 125 0 0 chr3 186423570 186423602 -31613556 + (T)n Simple_repeat Simple_repeat 1 32 0 563 200 65 97 chr3 186423662 186423847 -31613311 - MLT1I LTR MaLR -33 376 198 395 345 97 29 chr3 186424076 186424314 -31612844 + L2 LINE L2 2832 3085 -187 1718 128 4 23 chr3 186424429 186424695 -31612463 + AluSx SINE Alu 39 299 -13 233 318 10 42 chr3 186425200 186425322 -31611836 + MIR SINE MIR 4 120 -102 2113 177 19 42 chr3 186426062 186426486 -31610672 - MLT2D LTR ERVL 0 414 1 296 343 151 14 chr3 186426524 186426670 -31610488 - MIR3 SINE MIR -6 202 37 21 0 0 0 chr3 186426699 186426720 -31610438 + AT_rich Low_complexity Low_complexity 1 21 0 542 233 41 0 chr3 186426840 186426986 -31610172 + L1M4c LINE L1 2030 2181 -4203 1397 191 42 102 chr3 186427070 186427520 -31609638 + LTR37A LTR ERV1 4 426 0 779 255 120 15 chr3 186428640 186428899 -31608259 - MLT1J1 LTR MaLR -30 416 131 201 260 0 27 chr3 186429052 186429125 -31608033 + GA-rich Low_complexity Low_complexity 3 73 0 8436 155 18 33 chr3 186429134 186430754 -31606404 + L1MA4A LINE L1 3463 5032 -1271 1875 56 26 0 chr3 186430754 186430986 -31606172 - AluY SINE Alu 0 311 74 8436 155 18 33 chr3 186430986 186432231 -31604927 + L1MA4A LINE L1 5032 6294 -9 467 271 93 0 chr3 186432326 186432455 -31604703 + MER91A DNA MER1_type 2 142 -54 265 203 54 54 chr3 186432498 186432572 -31604586 + MER91A DNA MER1_type 123 196 0 252 354 35 0 chr3 186432766 186432879 -31604279 + MIR3 SINE MIR 92 208 0 195 100 0 0 chr3 186433140 186433170 -31603988 + (CA)n Simple_repeat Simple_repeat 1 30 0 387 238 40 0 chr3 186433926 186434027 -31603131 - MIR SINE MIR -56 206 102 1930 173 5 41 chr3 186434033 186434426 -31602732 - MLT1B LTR MaLR -11 379 1 2483 260 63 7 chr3 186436132 186436891 -31600267 - L1MEc LINE L1 -5571 825 24 1464 163 96 0 chr3 186436912 186437213 -31599945 - L1MA6 LINE L1 -12 6288 5959 933 135 0 0 chr3 186437214 186437347 -31599811 - FRAM SINE Alu -5 171 39 1435 122 0 34 chr3 186437347 186437373 -31599785 - L1MA6 LINE L1 -332 5968 5943 2127 124 0 3 chr3 186437373 186437663 -31599495 - AluSx SINE Alu -23 289 1 1435 122 0 34 chr3 186437663 186437898 -31599260 - L1MA6 LINE L1 -357 5943 5716 2165 101 70 14 chr3 186438000 186438355 -31598803 - THE1C LTR MaLR 0 375 1 192 279 66 16 chr3 186438507 186438568 -31598590 + MIR SINE MIR 38 101 -107 22 80 0 0 chr3 186438686 186438736 -31598422 + AT_rich Low_complexity Low_complexity 1 50 0 328 158 79 61 chr3 186439300 186439414 -31597744 - MER117 DNA MER1_type -78 119 4 278 237 172 0 chr3 186439439 186439532 -31597626 + L2 LINE L2 711 819 -2495 3031 117 19 2 chr3 186439881 186440359 -31596799 + LOR1a LTR ERV1 12 497 0 254 357 76 32 chr3 186440383 186440568 -31596590 + L2 LINE L2 1218 1410 -1904 379 280 126 19 chr3 186441384 186441591 -31595567 - L1ME3 LINE L1 0 6162 5934 2197 111 0 3 chr3 186441659 186441956 -31595202 - AluSx SINE Alu -16 296 1 1629 267 48 14 chr3 186441989 186442812 -31594346 - L1ME3 LINE L1 -273 5897 5046 235 358 42 0 chr3 186443057 186443152 -31594006 - L2 LINE L2 -17 3255 3157 180 298 38 94 chr3 186443285 186443520 -31593638 + L2 LINE L2 2455 2676 -638 321 362 0 0 chr3 186444118 186444234 -31592924 + L2 LINE L2 2931 3046 -226 223 313 52 31 chr3 186444361 186444457 -31592701 + L2 LINE L2 3169 3266 -6 548 311 55 25 chr3 186445144 186445382 -31591776 - MIR SINE MIR -9 253 9 347 242 147 0 chr3 186446383 186446478 -31590680 + L2 LINE L2 3163 3271 -1 230 206 14 0 chr3 186447691 186447764 -31589394 + (TA)n Simple_repeat Simple_repeat 2 75 0 1723 214 77 7 chr3 186448281 186448711 -31588447 + MLT1C LTR MaLR 4 463 -4 219 264 0 42 chr3 186448733 186448805 -31588353 - MIR SINE MIR 0 262 194 202 294 0 0 chr3 186449033 186449084 -31588074 + MIR3 SINE MIR 153 203 -5 538 116 0 0 chr3 186449810 186449896 -31587262 - L1MA2 LINE L1 -4 6300 6215 802 150 38 0 chr3 186449916 186450049 -31587109 + AluSg/x SINE Alu 169 306 -6 234 254 36 0 chr3 186450056 186450125 -31587033 - MIR3 SINE MIR -38 170 110 985 135 0 107 chr3 186450269 186450447 -31586711 - AluSx SINE Alu -153 159 1 1392 213 105 14 chr3 186450447 186450625 -31586533 - LTR54B LTR ERV1 -21 477 317 2147 105 25 0 chr3 186450625 186450910 -31586248 + AluSq SINE Alu 1 292 -21 1392 213 105 14 chr3 186450910 186451168 -31585990 - LTR54B LTR ERV1 -181 317 1 2080 102 15 30 chr3 186451192 186451587 -31585571 + L1PB1 LINE L1 5820 6209 0 412 266 218 32 chr3 186451831 186452147 -31585011 - L1ME4a LINE L1 -5 6116 5742 2381 70 3 3 chr3 186452848 186453148 -31584010 - AluSc SINE Alu -9 300 1 735 258 69 5 chr3 186453672 186453889 -31583269 - MIR SINE MIR -30 232 2 393 247 89 57 chr3 186453895 186454053 -31583105 - MIR SINE MIR -37 225 63 239 325 0 0 chr3 186455827 186455907 -31581251 + CT-rich Low_complexity Low_complexity 3 82 0 848 314 58 4 chr3 186456657 186456899 -31580259 - MIR SINE MIR 0 262 8 188 353 0 0 chr3 186457309 186457360 -31579798 - L2 LINE L2 -12 3260 3210 323 249 127 37 chr3 186457404 186457590 -31579568 + MIR SINE MIR 6 253 -9 282 216 23 80 chr3 186457927 186458015 -31579143 - MER5B DNA MER1_type -95 83 1 333 307 94 0 chr3 186458039 186458166 -31578992 + MIR SINE MIR 65 203 -59 1056 226 55 13 chr3 186458214 186458318 -31578840 - L1ME1 LINE L1 -4 6162 6064 4713 184 44 37 chr3 186458318 186458629 -31578529 - Tigger6a DNA MER2_type -515 1082 775 2059 111 3 27 chr3 186458629 186458927 -31578231 - AluSx SINE Alu -19 293 3 4713 184 44 37 chr3 186458927 186459690 -31577468 - Tigger6a DNA MER2_type -822 775 1 1056 226 55 13 chr3 186459690 186459750 -31577408 - L1ME1 LINE L1 -102 6064 4627 253 297 86 29 chr3 186459750 186459925 -31577233 - L1MA7 LINE L1 -293 5998 5814 1936 77 4 4 chr3 186510512 186510759 -31526399 + AluSc SINE Alu 60 306 -3 397 189 22 33 chr3 186510987 186511077 -31526081 - MIR3 SINE MIR -54 154 66 305 248 79 0 chr3 186511147 186511248 -31525910 + MIR SINE MIR 83 191 -71 411 316 105 36 chr3 186511437 186511741 -31525417 + L1MC5 LINE L1 4900 5224 -922 1445 192 55 20 chr3 186511746 186512038 -31525120 + AluJo SINE Alu 1 302 -10 935 244 78 53 chr3 186512111 186512468 -31524690 + L1MC5 LINE L1 5255 5620 -2188 2242 122 0 0 chr3 186512500 186512804 -31524354 + AluSg SINE Alu 1 304 -6 579 276 110 73 chr3 186512806 186513414 -31523744 + L1MC5 LINE L1 6091 6720 -1088 2151 121 3 6 chr3 186513414 186513727 -31523431 + AluSx SINE Alu 1 312 0 579 276 110 73 chr3 186513727 186513923 -31523235 + L1MC5 LINE L1 6720 6907 -901 6799 222 4 11 chr3 186513923 186515310 -31521848 + HERVK13 LTR ERVK 6740 8116 0 8716 49 7 4 chr3 186515310 186516314 -31520844 + LTR13 LTR ERVK 1 1007 0 1772 205 66 127 chr3 186516418 186516954 -31520204 + L1MC5 LINE L1 6962 7475 -486 328 58 39 0 chr3 186516954 186517006 -31520152 - Alu SINE Alu 0 301 248 1772 205 66 127 chr3 186517006 186517330 -31519828 + L1MC5 LINE L1 7475 7817 -144 21 36 0 0 chr3 186517366 186517394 -31519764 + AT_rich Low_complexity Low_complexity 1 28 0 322 237 46 99 chr3 186517604 186517735 -31519423 + L2 LINE L2 2699 2822 -492 1083 195 170 68 chr3 186517738 186518061 -31519097 + MLT1F LTR MaLR 2 357 -185 546 231 203 0 chr3 186518061 186518204 -31518954 - MER58A DNA MER1_type -13 211 40 579 216 86 0 chr3 186518219 186518358 -31518800 + MLT1F LTR MaLR 388 538 -29 1349 244 97 52 chr3 186518404 186518867 -31518291 + L2 LINE L2 2818 3301 -12 564 223 40 5 chr3 186519344 186519501 -31517657 + MIR SINE MIR 60 218 -44 2033 134 7 10 chr3 186519501 186519806 -31517352 + AluSq SINE Alu 1 304 -9 219 365 153 25 chr3 186519989 186520310 -31516848 + L2 LINE L2 2910 3271 -1 287 142 21 7 chr3 186521108 186521341 -31515817 + AluSx SINE Alu 1 291 -11 220 248 147 37 chr3 186522339 186522448 -31514710 + L2 LINE L2 2568 2688 -626 257 269 67 50 chr3 186522478 186522597 -31514561 + L2 LINE L2 2807 2927 -345 228 250 194 9 chr3 186522725 186522833 -31514325 + L2 LINE L2 3182 3309 -4 309 118 0 0 chr3 186524037 186524088 -31513070 + (A)n Simple_repeat Simple_repeat 1 51 0 1868 122 27 0 chr3 186524100 186524362 -31512796 + AluSx SINE Alu 29 297 -15 744 265 60 12 chr3 186524649 186524898 -31512260 + LTR37B LTR ERV1 198 458 -10 229 222 37 0 chr3 186525750 186525804 -31511354 - MER4D LTR ERV1 -786 117 62 1536 138 18 32 chr3 186525950 186526233 -31510925 + AluJb SINE Alu 15 293 -19 2062 131 67 3 chr3 186527164 186527493 -31509665 - L1PA16 LINE L1 -9 6157 5808 1289 121 30 5 chr3 186527772 186527970 -31509188 - AluSg SINE Alu -15 297 95 23 0 0 0 chr3 186528304 186528327 -31508831 + GC_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr3 186528596 186528621 -31508537 + AT_rich Low_complexity Low_complexity 1 25 0 717 160 0 0 chr3 186528621 186528727 -31508431 - AluSq/x SINE Alu -180 133 28 356 174 33 109 chr3 186528729 186528821 -31508337 - L1PA12 LINE L1 -7099 482 398 * 969 211 11 37 chr3 186528816 186529086 -31508072 + L1PA15-16 LINE L1 2585 2847 -4002 2267 158 28 3 chr3 186529086 186529440 -31507718 + THE1B LTR MaLR 1 363 -1 2980 142 12 71 chr3 186529441 186530032 -31507126 + THE1B-int LTR MaLR 1 556 -1024 188 184 20 0 chr3 186530296 186530345 -31506813 + CT-rich Low_complexity Low_complexity 2 51 0 219 36 0 0 chr3 186531094 186531122 -31506036 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 475 189 84 0 chr3 186531183 186531278 -31505880 - AluSg SINE Alu -207 103 1 207 244 0 0 chr3 186531484 186531529 -31505629 + CT-rich Low_complexity Low_complexity 2 46 0 302 317 54 54 chr3 186531690 186531857 -31505301 + L1M4 LINE L1 3683 3849 -2297 363 23 0 0 chr3 186532116 186532160 -31504998 + (CA)n Simple_repeat Simple_repeat 1 44 0 216 0 0 0 chr3 186532385 186532409 -31504749 + (A)n Simple_repeat Simple_repeat 1 24 0 317 24 24 0 chr3 186532505 186532547 -31504611 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 24 0 0 0 chr3 186533997 186534021 -31503137 + AT_rich Low_complexity Low_complexity 1 24 0 248 250 47 0 chr3 186534774 186534838 -31502320 + CT-rich Low_complexity Low_complexity 1 67 0 335 194 98 9 chr3 186535944 186536052 -31501106 + MIR SINE MIR 49 164 -63 21 0 0 0 chr3 186536403 186536424 -31500734 + AT_rich Low_complexity Low_complexity 1 21 0 28 61 0 0 chr3 186536657 186536706 -31500452 + AT_rich Low_complexity Low_complexity 1 49 0 241 250 0 0 chr3 186539047 186539099 -31498059 + CT-rich Low_complexity Low_complexity 2 53 0 386 273 85 70 chr3 186539921 186540059 -31497099 + L1MEd LINE L1 796 931 -5379 2217 123 3 3 chr3 186540059 186540368 -31496790 + AluSx SINE Alu 1 309 -3 386 273 85 70 chr3 186540368 186541089 -31496069 + L1MEd LINE L1 931 1731 -4579 542 191 8 8 chr3 186541180 186541311 -31495847 + L1ME3A LINE L1 6034 6164 -6 502 271 35 43 chr3 186541301 186541559 -31495599 + L1MEd LINE L1 3310 3565 -2564 * 301 275 38 25 chr3 186542061 186542163 -31494995 + L1MEd LINE L1 3599 3706 -2423 227 79 26 0 chr3 186542163 186542201 -31494957 + (TA)n Simple_repeat Simple_repeat 2 40 0 301 275 38 25 chr3 186542201 186542275 -31494883 + L1MEd LINE L1 3706 3778 -2351 2248 83 0 0 chr3 186542623 186542901 -31494257 - AluSg SINE Alu 0 310 33 2046 93 28 14 chr3 186543689 186543978 -31493180 - AluSx SINE Alu -14 298 6 206 79 0 53 chr3 186544143 186544181 -31492977 + (TCTA)n Simple_repeat Simple_repeat 2 37 0 313 226 63 94 chr3 186544244 186544403 -31492755 - L1MC4 LINE L1 -1 8041 7888 350 297 129 0 chr3 186544415 186544570 -31492588 - L1M4 LINE L1 -1062 5084 4910 804 153 177 14 chr3 186544738 186544947 -31492211 + MER4C LTR ERV1 1 243 -222 40804 33 22 2 chr3 186544952 186550978 -31486180 - L1PA2 LINE L1 -2 6153 3 656 305 141 10 chr3 186550995 186551766 -31485392 - L1M4 LINE L1 -1252 4894 4023 192 245 0 0 chr3 186551787 186551840 -31485318 + (CATATA)n Simple_repeat Simple_repeat 6 58 0 1363 169 79 21 chr3 186551993 186552283 -31484875 - AluJo SINE Alu -5 307 1 262 343 15 7 chr3 186552360 186552497 -31484661 - L1M4 LINE L1 -2282 3864 3727 683 294 154 50 chr3 186552506 186553416 -31483742 - L1M4 LINE L1 -2457 3689 2686 24 67 0 0 chr3 186554574 186554619 -31482539 + AT_rich Low_complexity Low_complexity 1 45 0 207 0 0 0 chr3 186555439 186555462 -31481696 + (T)n Simple_repeat Simple_repeat 1 23 0 2320 99 0 7 chr3 186558535 186558839 -31478319 + AluSx SINE Alu 1 302 -10 25 51 0 0 chr3 186559557 186559596 -31477562 + AT_rich Low_complexity Low_complexity 1 39 0 2193 92 10 3 chr3 186560141 186560436 -31476722 + AluSx SINE Alu 1 297 -15 25 0 0 0 chr3 186560951 186560976 -31476182 + AT_rich Low_complexity Low_complexity 1 25 0 2564 66 0 0 chr3 186561135 186561438 -31475720 + AluY SINE Alu 1 303 -8 258 253 101 0 chr3 186561545 186561624 -31475534 - L1MC/D LINE L1 -2017 5791 5705 189 0 0 0 chr3 186561677 186561698 -31475460 + (CAA)n Simple_repeat Simple_repeat 1 21 0 668 207 8 8 chr3 186562243 186562364 -31474794 - FLAM_A SINE Alu -12 121 1 1630 165 70 14 chr3 186562762 186563107 -31474051 + THE1B LTR MaLR 1 364 0 10090 118 18 34 chr3 186563109 186564713 -31472445 + THE1C-int LTR MaLR 3 1580 0 1925 150 52 27 chr3 186564713 186565079 -31472079 + THE1C LTR MaLR 1 375 0 736 175 65 149 chr3 186565094 186565603 -31471555 - L1MC4 LINE L1 -3 8039 7574 1034 172 8 123 chr3 186565608 186565876 -31471282 - AluJb SINE Alu -6 306 70 1014 173 62 9 chr3 186565885 186566111 -31471047 - L1MC4 LINE L1 -502 7540 7303 2197 128 13 0 chr3 186566479 186566783 -31470375 + AluSx SINE Alu 1 308 -4 1420 201 60 111 chr3 186566796 186567564 -31469594 + L1MC5 LINE L1 6717 7445 -516 284 247 41 0 chr3 186567591 186567664 -31469494 + L1MC5 LINE L1 7812 7887 -74 850 129 6 90 chr3 186567949 186568127 -31469031 - AluSg/x SINE Alu -12 298 136 827 305 37 20 chr3 186568323 186568671 -31468487 + ERVL LTR ERVL 3368 3721 -2043 1450 113 0 0 chr3 186568788 186568983 -31468175 - AluSc SINE Alu -6 303 109 2364 81 7 3 chr3 186568997 186569294 -31467864 - AluSc SINE Alu -11 298 1 932 266 81 43 chr3 186569331 186569817 -31467341 + ERVL LTR ERVL 4152 4699 -847 1159 166 0 42 chr3 186570891 186571108 -31466050 - AluJb SINE Alu -20 292 85 684 263 111 14 chr3 186571182 186571399 -31465759 - MIR SINE MIR -16 246 9 1027 170 101 12 chr3 186571417 186571664 -31465494 + MER96B DNA MER1_type? 2 270 -147 238 148 0 148 chr3 186571655 186571716 -31465442 - MER96B DNA MER1_type? -363 54 3 * 241 146 0 0 chr3 186571989 186572030 -31465128 - L2 LINE L2 -4 3309 3269 471 223 45 18 chr3 186572170 186572282 -31464876 - MIR SINE MIR -111 151 37 341 279 158 71 chr3 186574446 186574812 -31462346 + L1M2 LINE L1 1007 1404 -5445 186 143 0 0 chr3 186574986 186575021 -31462137 + (CGG)n Simple_repeat Simple_repeat 3 37 0 1721 146 0 4 chr3 186576230 186576498 -31460660 + AluJb SINE Alu 9 275 -37 436 246 63 8 chr3 186576755 186576881 -31460277 - L1ME1 LINE L1 -62 6104 5972 515 255 83 0 chr3 186576890 186577035 -31460123 - MIR SINE MIR -104 158 2 2636 203 62 3 chr3 186577109 186577689 -31459469 + MER82 DNA MER2_type 39 652 -1 316 367 50 47 chr3 186577713 186577863 -31459295 - L2 LINE L2 -61 3211 3058 1268 181 77 0 chr3 186577863 186578162 -31458996 - MER33 DNA MER1_type -2 322 1 316 367 50 47 chr3 186578162 186578289 -31458869 - L2 LINE L2 -214 3058 2933 2144 103 0 60 chr3 186578431 186578762 -31458396 - AluY SINE Alu 0 311 1 25 0 0 0 chr3 186578762 186578787 -31458371 + AT_rich Low_complexity Low_complexity 1 25 0 328 325 201 18 chr3 186578966 186579305 -31457853 - L2 LINE L2 -825 2489 2089 3834 98 19 117 chr3 186579633 186579776 -31457382 - MER4A LTR ERV1 0 664 509 2473 54 0 3 chr3 186579776 186580072 -31457086 - AluY SINE Alu -16 295 1 3834 98 19 117 chr3 186580072 186580664 -31456494 - MER4A LTR ERV1 -155 509 1 288 221 0 0 chr3 186581684 186581752 -31455406 - LTR67 LTR ERVL -3 554 487 1314 178 111 35 chr3 186582134 186582532 -31454626 + MSTC LTR MaLR 1 428 0 1364 251 52 33 chr3 186582840 186583441 -31453717 + L1MEc LINE L1 1746 2357 -4039 972 174 0 0 chr3 186583531 186583686 -31453472 - AluSg/x SINE Alu -27 283 129 279 0 0 0 chr3 186583686 186583717 -31453441 + (TG)n Simple_repeat Simple_repeat 2 32 0 558 189 0 0 chr3 186583719 186583830 -31453328 + (CA)n Simple_repeat Simple_repeat 2 112 0 10925 99 37 3 chr3 186583965 186585492 -31451666 + THE1B-int LTR MaLR 1 1579 -1 2325 123 6 8 chr3 186585493 186585852 -31451306 + THE1B LTR MaLR 1 358 -6 14779 179 28 9 chr3 186585859 186588643 -31448515 + L1PA14 LINE L1 2141 4871 -1275 6587 80 28 62 chr3 186588643 186589045 -31448113 + SVA Other Other 1 1386 -991 6587 92 37 78 chr3 186589045 186590207 -31446951 + SVA Other Other 272 1386 0 14779 179 28 9 chr3 186590207 186590408 -31446750 + L1PA14 LINE L1 4871 5067 -1079 183 42 0 0 chr3 186590408 186590432 -31446726 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 14779 179 28 9 chr3 186590432 186590593 -31446565 + L1PA14 LINE L1 5067 5348 -798 311 43 0 22 chr3 186590593 186590639 -31446519 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 35425 39 3 0 chr3 186590639 186595949 -31441209 - L1PA3 LINE L1 -24 6131 809 5117 113 19 5 chr3 186595949 186596753 -31440405 + L1PA14 LINE L1 5337 6151 -10 3562 178 61 46 chr3 186596770 186596932 -31440226 + L1MB7 LINE L1 5151 5309 -875 1934 122 0 96 chr3 186596932 186597267 -31439891 + AluSx SINE Alu 1 303 -9 3562 178 61 46 chr3 186597267 186598106 -31439052 + L1MB7 LINE L1 5309 6182 -2 265 159 0 0 chr3 186598107 186598170 -31438988 + L1MB7 LINE L1 6122 6184 0 609 242 42 33 chr3 186598315 186598530 -31438628 + L1ME2 LINE L1 3850 4066 -2080 38853 69 2 4 chr3 186598596 186604757 -31432401 - L1PA5 LINE L1 0 6154 2 2109 131 0 3 chr3 186604786 186605084 -31432074 - AluSg SINE Alu -13 297 1 1208 219 58 134 chr3 186605084 186605209 -31431949 - MLT1E2 LTR MaLR -50 575 442 207 0 0 0 chr3 186605209 186605232 -31431926 + (TG)n Simple_repeat Simple_repeat 2 24 0 1208 219 58 134 chr3 186605232 186605727 -31431431 - MLT1E2 LTR MaLR -183 442 1 665 274 41 41 chr3 186605728 186606020 -31431138 + L1ME2 LINE L1 4063 4354 -1792 21 0 0 0 chr3 186606053 186606074 -31431084 + AT_rich Low_complexity Low_complexity 1 21 0 5571 158 22 55 chr3 186606290 186607553 -31429605 + L1MC3 LINE L1 5735 6955 -830 2124 194 111 50 chr3 186607560 186608292 -31428866 + L1ME2 LINE L1 5389 6164 0 2834 150 18 37 chr3 186608364 186608486 -31428672 - L1PB4 LINE L1 -3 6153 6030 2481 63 3 0 chr3 186608486 186608788 -31428370 - AluSp SINE Alu -10 303 1 2834 150 18 37 chr3 186608788 186609233 -31427925 - L1PB4 LINE L1 -126 6030 5597 1133 151 19 0 chr3 186609236 186609441 -31427717 - L1P5 LINE L1 -516 5640 5432 331 100 0 0 chr3 186609445 186609495 -31427663 - MLT2A2 LTR ERVL -2 451 402 311 154 0 103 chr3 186609496 186609613 -31427545 + (TA)n Simple_repeat Simple_repeat 2 106 0 2755 89 33 0 chr3 186609629 186610021 -31427137 - MLT2A2 LTR ERVL -47 406 2 8798 183 23 13 chr3 186610021 186612071 -31425087 - L1P5 LINE L1 -719 5435 3371 2411 127 17 7 chr3 186612076 186612495 -31424663 - Tigger1 DNA MER2_type -1648 770 348 314 97 89 16 chr3 186612495 186612619 -31424539 + GA-rich Low_complexity Low_complexity 3 135 0 563 219 8 8 chr3 186612619 186612747 -31424411 - Tigger1 DNA MER2_type -2054 364 237 4690 117 57 60 chr3 186612748 186613960 -31423198 + pTR5 LTR ERV1 743 2396 -210 2521 62 0 10 chr3 186613960 186614269 -31422889 + AluSp SINE Alu 1 306 -7 4690 117 57 60 chr3 186614269 186614480 -31422678 + pTR5 LTR ERV1 2396 2606 0 1257 149 4 29 chr3 186614480 186614521 -31422637 - Tigger1 DNA MER2_type -2179 239 199 2555 169 7 0 chr3 186614521 186614946 -31422212 - MSTC LTR MaLR 0 428 1 1257 149 4 29 chr3 186614946 186615145 -31422013 - Tigger1 DNA MER2_type -2219 199 5 1136 241 48 19 chr3 186615167 186615237 -31421921 - L1MEc LINE L1 -2382 3833 3766 969 121 216 5 chr3 186615237 186615427 -31421731 - MER30 DNA MER1_type 0 230 1 1136 241 48 19 chr3 186615427 186615775 -31421383 - L1MEc LINE L1 -2449 3766 3403 302 60 0 20 chr3 186616316 186616366 -31420792 + (TG)n Simple_repeat Simple_repeat 2 50 0 187 102 20 20 chr3 186616372 186616421 -31420737 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 225 94 0 0 chr3 186617080 186617112 -31420046 + (A)n Simple_repeat Simple_repeat 1 32 0 234 136 0 0 chr3 186618353 186618397 -31418761 + (TG)n Simple_repeat Simple_repeat 2 45 0 206 219 0 0 chr3 186619800 186619841 -31417317 + C-rich Low_complexity Low_complexity 1 41 0 2807 240 60 8 chr3 186619877 186620876 -31416282 - L1MEc LINE L1 -2799 3416 2366 1857 128 116 43 chr3 186620900 186621255 -31415903 + MSTA LTR MaLR 2 390 -38 6210 99 75 0 chr3 186621255 186622303 -31414855 - L1PA11 LINE L1 0 6174 5104 1857 128 116 43 chr3 186622303 186622345 -31414813 + MSTA LTR MaLR 390 428 0 333 195 35 0 chr3 186622358 186622445 -31414713 - L1MEc LINE L1 -3857 2358 2269 * 3713 150 46 34 chr3 186622437 186623199 -31413959 - L1MB3 LINE L1 -2 6181 5411 776 183 20 0 chr3 186623203 186623356 -31413802 + MSTD LTR MaLR 5 160 -236 1634 267 83 34 chr3 186623369 186623894 -31413264 - L1MEc LINE L1 -4238 2158 1660 1218 203 66 109 chr3 186623894 186624382 -31412776 + MLT1C LTR MaLR 1 467 0 1634 267 83 34 chr3 186624382 186624920 -31412238 - L1MEc LINE L1 -4736 1660 1043 2032 227 6 2 chr3 186624968 186625457 -31411701 - L1MEc LINE L1 -5456 940 450 538 167 0 19 chr3 186625474 186625582 -31411576 - L1PA7 LINE L1 -1 6153 6048 3742 158 25 14 chr3 186625582 186626079 -31411079 + L1M1 LINE L1 1968 2477 -5088 2131 126 0 3 chr3 186626079 186626381 -31410777 + AluSg SINE Alu 1 301 -9 3742 158 25 14 chr3 186626381 186626618 -31410540 + L1M1 LINE L1 2477 2710 -4855 636 249 24 109 chr3 186626622 186626915 -31410243 - L2 LINE L2 -5 3308 3041 538 264 119 44 chr3 186626915 186627351 -31409807 + L1MC4 LINE L1 7574 8042 0 491 264 28 0 chr3 186628586 186628730 -31408428 + L1ME4a LINE L1 5713 5860 -261 276 193 53 0 chr3 186629420 186629477 -31407681 - MER20 DNA MER1_type -1 218 159 23 54 0 0 chr3 186630085 186630122 -31407036 + AT_rich Low_complexity Low_complexity 1 37 0 242 278 0 21 chr3 186630185 186630282 -31406876 - L1ME4a LINE L1 -53 6068 5974 555 234 23 34 chr3 186630297 186630472 -31406686 + MER5B DNA MER1_type 5 177 -1 261 296 80 56 chr3 186631396 186631521 -31405637 - MIR SINE MIR -123 139 12 356 247 62 0 chr3 186631621 186631718 -31405440 + MIR SINE MIR 143 245 -17 299 337 20 0 chr3 186631838 186631936 -31405222 + L3 LINE CR1 1329 1428 -149 1798 160 16 3 chr3 186631944 186632257 -31404901 - L1MC1 LINE L1 -1 6332 6016 968 178 0 0 chr3 186633344 186633496 -31403662 - AluJb SINE Alu -30 282 131 323 273 0 0 chr3 186633646 186633712 -31403446 - L3 LINE CR1 -15 1562 1497 299 313 80 6 chr3 186633935 186634111 -31403047 - L2 LINE L2 -159 3113 2925 196 320 179 0 chr3 186634121 186634199 -31402959 + MIR SINE MIR 107 198 -64 25 0 0 0 chr3 186634233 186634258 -31402900 + AT_rich Low_complexity Low_complexity 1 25 0 981 228 54 13 chr3 186634598 186634822 -31402336 - MIR SINE MIR -10 252 20 16666 105 17 56 chr3 186634825 186635159 -31401999 - L1PA7 LINE L1 0 6154 5809 2663 39 0 3 chr3 186635159 186635469 -31401689 - AluY SINE Alu -2 309 1 16666 105 17 56 chr3 186635469 186641407 -31395751 - L1PA7 LINE L1 -345 5809 12 187 320 20 0 chr3 186642692 186642742 -31394416 - MIR SINE MIR -177 85 35 * 624 198 16 0 chr3 186642715 186642836 -31394322 + MIR SINE MIR 35 157 -105 713 213 0 7 chr3 186642901 186643056 -31394102 + L1M4 LINE L1 2519 2672 -3474 21 0 0 0 chr3 186643693 186643714 -31393444 + AT_rich Low_complexity Low_complexity 1 21 0 2292 206 109 13 chr3 186644945 186645560 -31391598 - L1ME1 LINE L1 -18 6542 5869 * 2374 220 71 13 chr3 186645553 186646239 -31390919 - L1ME1 LINE L1 -3311 3229 2504 969 251 72 48 chr3 186646246 186646771 -31390387 - L1ME1 LINE L1 -4115 2425 1888 355 264 56 24 chr3 186646767 186646838 -31390320 - L1ME LINE L1 -563 5558 5480 * 1343 150 35 0 chr3 186646838 186647065 -31390093 - MER46A DNA MER2_type 0 236 2 355 264 56 24 chr3 186647065 186647118 -31390040 - L1ME LINE L1 -641 5480 5430 301 172 172 0 chr3 186647141 186647199 -31389959 + AluSg/x SINE Alu 213 280 -20 23 68 0 0 chr3 186647266 186647310 -31389848 + AT_rich Low_complexity Low_complexity 1 44 0 658 213 0 29 chr3 186647593 186647729 -31389429 - FLAM_A SINE Alu 0 133 2 447 155 52 0 chr3 186647839 186647936 -31389222 + MER53 DNA DNA 4 105 -84 1936 141 3 13 chr3 186647951 186648249 -31388909 + AluJb SINE Alu 1 295 -17 5544 157 10 18 chr3 186648283 186649666 -31387492 - L1MA7 LINE L1 0 6291 4923 1792 176 3 10 chr3 186649666 186649978 -31387180 - AluJo SINE Alu -2 310 1 5544 157 10 18 chr3 186649978 186650249 -31386909 - L1MA7 LINE L1 -1368 4923 4651 268 156 0 0 chr3 186650255 186650300 -31386858 + MER53 DNA DNA 142 186 -3 23 33 0 0 chr3 186650350 186650380 -31386778 + AT_rich Low_complexity Low_complexity 1 30 0 1512 213 47 30 chr3 186650611 186650972 -31386186 + MLT1A2 LTR MaLR 4 370 -4 215 313 45 78 chr3 186651031 186651210 -31385948 - MIR SINE MIR -66 196 24 869 260 121 37 chr3 186651554 186652016 -31385142 - HAL1 LINE L1 -191 2316 1816 950 294 107 27 chr3 186652031 186652413 -31384745 - HAL1 LINE L1 -739 1768 1325 185 0 0 39 chr3 186652413 186652439 -31384719 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 950 294 107 27 chr3 186652439 186652617 -31384541 - HAL1 LINE L1 -1182 1325 1163 489 270 341 9 chr3 186652752 186653089 -31384069 + Charlie2 DNA MER1_type 173 621 -2241 2520 213 104 22 chr3 186653181 186653951 -31383207 + Charlie2a DNA MER1_type 1472 2304 -558 829 271 46 57 chr3 186653951 186654323 -31382835 + L1PB4 LINE L1 4 371 -6479 328 341 100 29 chr3 186654605 186654775 -31382383 + L1PB4 LINE L1 776 957 -5893 358 336 18 35 chr3 186655176 186655405 -31381753 + L1PA15-16 LINE L1 1324 1548 -5301 307 265 24 24 chr3 186655420 186655503 -31381655 + L1PA15-16 LINE L1 1472 1554 -5295 * 1115 261 24 19 chr3 186655492 186655560 -31381598 + L1PB4 LINE L1 1347 1413 -5436 212 0 36 0 chr3 186655560 186655588 -31381570 + (CA)n Simple_repeat Simple_repeat 1 29 0 1115 261 24 19 chr3 186655588 186656034 -31381124 + L1PB4 LINE L1 1413 1968 -4881 9716 178 25 41 chr3 186656046 186656270 -31380888 + L1PB4 LINE L1 3776 4002 -2857 1632 187 7 16 chr3 186656270 186656575 -31380583 + AluJo SINE Alu 1 302 -10 9716 178 25 41 chr3 186656575 186659182 -31377976 + L1PB4 LINE L1 4002 6546 -313 477 0 0 0 chr3 186659189 186659242 -31377916 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 440 233 67 21 chr3 186659273 186659466 -31377692 + Charlie2a DNA MER1_type 2593 2794 -68 309 109 0 0 chr3 186659913 186659959 -31377199 + (TA)n Simple_repeat Simple_repeat 1 46 0 30 0 0 0 chr3 186660097 186660127 -31377031 + AT_rich Low_complexity Low_complexity 1 30 0 1060 153 0 0 chr3 186660547 186660710 -31376448 - U1 snRNA snRNA -1 164 2 469 200 111 37 chr3 186660882 186661017 -31376141 - MIR SINE MIR -10 252 108 21 0 0 0 chr3 186661683 186661704 -31375454 + AT_rich Low_complexity Low_complexity 1 21 0 345 192 30 40 chr3 186664404 186664503 -31372655 - MIR SINE MIR -150 112 15 29 0 0 0 chr3 186666608 186666637 -31370521 + AT_rich Low_complexity Low_complexity 1 29 0 1697 217 69 1 chr3 186668619 186669050 -31368108 - L1ME3A LINE L1 -5 6165 5701 855 215 67 5 chr3 186669387 186669582 -31367576 - L1ME3A LINE L1 -450 5720 5514 200 254 104 15 chr3 186670463 186670530 -31366628 + L2 LINE L2 3149 3221 -92 240 259 136 0 chr3 186674384 186674465 -31362693 - MIR SINE MIR -105 157 66 621 293 76 30 chr3 186675229 186675452 -31361706 - MIR SINE MIR 0 262 34 351 0 0 0 chr3 186675589 186675628 -31361530 + (TG)n Simple_repeat Simple_repeat 1 39 0 610 151 0 38 chr3 186675997 186676103 -31361055 - AluJb SINE Alu -13 299 198 1975 229 64 17 chr3 186676834 186677315 -31359843 + MLT1D LTR MaLR 2 505 0 261 83 0 0 chr3 186677780 186677816 -31359342 + (CAT)n Simple_repeat Simple_repeat 3 38 0 709 267 26 10 chr3 186677826 186678021 -31359137 - MIR SINE MIR -11 251 54 27 0 0 0 chr3 186678826 186678853 -31358305 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr3 186679235 186679256 -31357902 + AT_rich Low_complexity Low_complexity 1 21 0 386 277 54 8 chr3 186680733 186680863 -31356295 - Charlie8 DNA MER1_type -2224 193 58 1918 141 0 10 chr3 186680863 186681154 -31356004 + AluJb SINE Alu 1 288 -24 1781 138 60 3 chr3 186681832 186682114 -31355044 + AluSx SINE Alu 3 300 -12 2452 75 7 0 chr3 186682522 186682828 -31354330 - AluSp SINE Alu -5 308 1 339 298 40 8 chr3 186683286 186683410 -31353748 - L2 LINE L2 -1 3271 3144 301 176 0 0 chr3 186684749 186684800 -31352358 + L1MC4 LINE L1 6653 6703 -1339 288 202 6 139 chr3 186685184 186685357 -31351801 + L1MC/D LINE L1 5674 5823 -1985 199 267 186 0 chr3 186685697 186685783 -31351375 + MIR SINE MIR 47 148 -60 357 290 69 30 chr3 186685936 186686067 -31351091 + MER5A DNA MER1_type 17 152 -37 298 149 50 43 chr3 186686196 186686246 -31350912 + (TA)n Simple_repeat Simple_repeat 1 49 -463 1956 153 0 3 chr3 186686246 186686533 -31350625 + AluJo SINE Alu 1 286 -26 298 149 50 43 chr3 186686533 186686705 -31350453 + (TA)n Simple_repeat Simple_repeat 49 512 0 422 128 13 13 chr3 186687070 186687148 -31350010 - MLT1E2 LTR MaLR -3 623 546 691 174 8 8 chr3 186687150 186687271 -31349887 + FLAM_C SINE Alu 1 121 -22 1063 264 88 25 chr3 186687276 186687762 -31349396 - MLT1E2 LTR MaLR -81 497 1 418 221 62 18 chr3 186689332 186689445 -31347713 - MIR SINE MIR -79 183 66 293 284 33 10 chr3 186689734 186689831 -31347327 + MIR SINE MIR 96 193 -45 311 269 0 13 chr3 186689983 186690061 -31347097 - MIR SINE MIR -112 150 74 397 292 15 74 chr3 186690252 186690454 -31346704 - MIR3 SINE MIR -3 205 16 223 243 0 0 chr3 186690619 186690656 -31346502 - L2 LINE L2 -25 3247 3211 406 248 0 0 chr3 186690672 186690777 -31346381 + MER113 DNA MER1_type? 1 105 -416 46 89 0 0 chr3 186690925 186691048 -31346110 + AT_rich Low_complexity Low_complexity 1 123 0 285 303 67 17 chr3 186691205 186691324 -31345834 - MIR SINE MIR -132 130 6 808 265 61 36 chr3 186691495 186691970 -31345188 - L1MC4 LINE L1 -1 8041 7555 180 0 0 0 chr3 186692014 186692034 -31345124 + (T)n Simple_repeat Simple_repeat 1 20 0 410 318 78 57 chr3 186692840 186693085 -31344073 + MIR SINE MIR 13 262 0 340 287 0 0 chr3 186693652 186693739 -31343419 - MIR SINE MIR 0 262 176 787 302 141 26 chr3 186694963 186695648 -31341510 + L2 LINE L2 2550 3312 -1 426 280 72 8 chr3 186695714 186695839 -31341319 - L2 LINE L2 0 3313 3181 554 323 86 16 chr3 186695933 186696246 -31340912 - L2 LINE L2 -508 2806 2472 1948 119 0 83 chr3 186696266 186696602 -31340556 - AluSx SINE Alu -4 308 1 7440 201 65 50 chr3 186696765 186696785 -31340373 - L1MD1 LINE L1 -2 6634 6616 1953 156 3 13 chr3 186696785 186697087 -31340071 + AluJo SINE Alu 2 300 -12 7440 201 65 50 chr3 186697087 186697401 -31339757 - L1MD1 LINE L1 -20 6616 6308 1484 175 33 125 chr3 186697401 186697857 -31339301 - MLT2D LTR ERVL 0 414 1 7440 201 65 50 chr3 186697857 186698233 -31338925 - L1MD1 LINE L1 -328 6308 5939 246 226 19 0 chr3 186698233 186698286 -31338872 - AluSg/x SINE Alu -132 170 117 7440 201 65 50 chr3 186698286 186698755 -31338403 - L1MD1 LINE L1 -697 5939 5479 1991 117 6 48 chr3 186698755 186699071 -31338087 - AluSg SINE Alu -7 303 1 7440 201 65 50 chr3 186699071 186699612 -31337546 - L1MD1 LINE L1 -1157 5479 4948 1646 185 10 13 chr3 186699612 186699925 -31337233 - AluJb SINE Alu 0 312 1 7440 201 65 50 chr3 186699925 186701604 -31335554 - L1MD1 LINE L1 -1688 4948 3107 639 204 88 0 chr3 186701729 186701910 -31335248 - L1MD1 LINE L1 -3436 3104 2908 * 3061 227 85 13 chr3 186701908 186702732 -31334426 - L1MD1 LINE L1 -5597 943 9 212 211 0 35 chr3 186702767 186702824 -31334334 + (CAAAC)n Simple_repeat Simple_repeat 1 55 0 936 286 193 27 chr3 186703023 186703923 -31333235 + L2 LINE L2 2287 3307 -6 584 232 137 52 chr3 186704014 186704225 -31332933 + MIR SINE MIR 34 262 0 337 297 171 0 chr3 186704692 186704867 -31332291 - MIR SINE MIR -16 246 42 * 369 264 146 0 chr3 186704859 186704969 -31332189 - L2 LINE L2 0 3313 3188 328 292 52 0 chr3 186705110 186705206 -31331952 - L2 LINE L2 -13 3300 3200 540 268 90 68 chr3 186705280 186705634 -31331524 - Charlie8 DNA MER1_type -1900 517 156 1571 149 0 65 chr3 186706108 186706384 -31330774 - AluJo SINE Alu -53 259 2 405 305 73 28 chr3 186706680 186706857 -31330301 - MIR SINE MIR -67 195 11 1954 123 38 17 chr3 186707350 186707642 -31329516 - AluY SINE Alu 0 311 14 285 159 0 0 chr3 186707642 186707686 -31329472 - Alu SINE Alu -258 44 1 27 0 0 0 chr3 186708411 186708438 -31328720 + AT_rich Low_complexity Low_complexity 1 27 0 186 71 0 0 chr3 186708693 186708721 -31328437 + (GCTG)n Simple_repeat Simple_repeat 1 28 0 490 117 0 0 chr3 186709305 186709382 -31327776 - L1MB1 LINE L1 -7 6161 6085 473 255 49 124 chr3 186710150 186710417 -31326741 + MIR SINE MIR 16 262 0 619 85 0 0 chr3 186710845 186710927 -31326231 - AluSg SINE Alu -228 82 1 2494 70 0 16 chr3 186711537 186711849 -31325309 + AluY SINE Alu 1 307 -4 2583 44 0 0 chr3 186711999 186712296 -31324862 + AluY SINE Alu 1 297 -14 1162 81 86 0 chr3 186713107 186713293 -31323865 + MER30 DNA MER1_type 1 202 -28 410 381 25 6 chr3 186713772 186713932 -31323226 + MIR3 SINE MIR 7 169 -39 1887 112 37 0 chr3 186714102 186714410 -31322748 + AluSq SINE Alu 5 322 0 354 283 69 21 chr3 186715755 186715900 -31321258 + MER57B LTR ERV1 21 172 -262 500 172 21 23 chr3 186715957 186716109 -31321049 + LTR54 LTR ERV1 255 510 0 193 353 35 9 chr3 186716142 186716258 -31320900 + L2 LINE L2 2864 2982 -290 2144 126 76 15 chr3 186717384 186717725 -31319433 + THE1B LTR MaLR 1 362 -2 11507 83 28 1 chr3 186717728 186719265 -31317893 + THE1B-int LTR MaLR 2 1580 0 1955 133 89 18 chr3 186719265 186719603 -31317555 + THE1B LTR MaLR 1 362 -2 625 230 249 58 chr3 186721405 186722107 -31315051 - L2 LINE L2 0 3313 2386 884 130 20 0 chr3 186722109 186722255 -31314903 - Tigger7 DNA MER2_type 0 2587 2439 * 1887 173 27 0 chr3 186722250 186722585 -31314573 - Tigger7 DNA MER2_type -389 344 1 1700 252 126 56 chr3 186722597 186723147 -31314011 - L2 LINE L2 -965 2349 1732 1758 154 195 15 chr3 186723147 186723537 -31313621 - LOR1b LTR ERV1 -1 460 1 1700 252 126 56 chr3 186723537 186723723 -31313435 - L2 LINE L2 -1582 1732 1561 779 239 108 12 chr3 186723800 186724059 -31313099 - L2 LINE L2 -2572 742 459 296 284 53 0 chr3 186726333 186726428 -31310730 - L3 LINE CR1 -11 1566 1467 446 299 119 17 chr3 186732593 186732770 -31304388 - MIR SINE MIR -13 249 55 2480 63 0 7 chr3 186733022 186733324 -31303834 + AluY SINE Alu 2 301 -10 529 298 19 0 chr3 186733858 186734016 -31303142 - MIR SINE MIR -39 223 63 25 51 0 0 chr3 186734298 186734337 -31302821 + AT_rich Low_complexity Low_complexity 1 39 0 257 67 0 22 chr3 186736081 186736126 -31301032 + (GA)n Simple_repeat Simple_repeat 1 44 0 193 213 43 0 chr3 186737607 186737654 -31299504 + L2 LINE L2 3265 3313 0 5442 179 55 14 chr3 186738047 186740160 -31296998 + L1PA16 LINE L1 3970 6166 0 23 54 0 0 chr3 186740204 186740241 -31296917 + AT_rich Low_complexity Low_complexity 1 37 0 182 321 0 0 chr3 186741244 186741300 -31295858 - L2 LINE L2 -12 3301 3246 2266 96 0 43 chr3 186741345 186741667 -31295491 - AluSg SINE Alu -2 308 1 1632 230 144 56 chr3 186742277 186743050 -31294108 - HAL1 LINE L1 -14 2493 1653 1113 228 39 65 chr3 186743069 186743425 -31293733 + MLT2B1 LTR ERVL 131 477 -43 255 170 0 0 chr3 186743428 186743475 -31293683 + (TA)n Simple_repeat Simple_repeat 1 47 0 231 161 0 36 chr3 186743482 186743538 -31293620 - L1MC4 LINE L1 -1339 6703 6650 1041 236 85 71 chr3 186743559 186744288 -31292870 - HAL1 LINE L1 -911 1596 858 359 291 64 17 chr3 186744319 186744491 -31292667 - HAL1 LINE L1 -1746 761 582 630 299 106 30 chr3 186744541 186744939 -31292219 - HAL1 LINE L1 -2056 451 24 1801 107 0 20 chr3 186746055 186746335 -31290823 - AluSq SINE Alu 0 312 38 609 213 80 20 chr3 186747024 186747174 -31289984 - MER5B DNA MER1_type -5 173 15 528 286 169 48 chr3 186748602 186749210 -31287948 - L3 LINE CR1 -3 1574 893 212 300 11 89 chr3 186749518 186749608 -31287550 - L3 LINE CR1 -779 798 716 25 0 0 0 chr3 186749749 186749774 -31287384 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr3 186752521 186752542 -31284616 + AT_rich Low_complexity Low_complexity 1 21 0 588 266 26 7 chr3 186752664 186752818 -31284340 + MIR3 SINE MIR 43 199 -9 475 242 118 33 chr3 186753262 186753825 -31283333 + Charlie7 DNA MER1_type 86 721 -1891 2265 110 0 3 chr3 186753863 186754164 -31282994 - AluSg SINE Alu -10 300 1 278 276 30 15 chr3 186754169 186754303 -31282855 + Charlie7 DNA MER1_type 2477 2612 0 195 211 35 18 chr3 186754500 186754557 -31282601 - L2 LINE L2 0 3313 3256 194 295 0 66 chr3 186755268 186755329 -31281829 - L2 LINE L2 -1 3271 3215 186 306 20 0 chr3 186755426 186755475 -31281683 - L2 LINE L2 -13 3259 3210 * 188 270 0 0 chr3 186755446 186755483 -31281675 - MIR SINE MIR -28 234 198 261 139 0 0 chr3 186756030 186756073 -31281085 + (T)n Simple_repeat Simple_repeat 1 43 0 1048 193 60 103 chr3 186756708 186757092 -31280066 + MLT2B1 LTR ERVL 3 350 -64 1962 112 32 4 chr3 186757092 186757390 -31279768 + AluSx SINE Alu 1 306 0 1048 193 60 103 chr3 186757390 186757453 -31279705 + MLT2B1 LTR ERVL 350 414 0 2474 71 3 0 chr3 186757569 186757878 -31279280 - AluY SINE Alu -1 310 1 285 283 80 18 chr3 186758731 186758844 -31278314 - MIR SINE MIR -65 197 78 428 103 10 72 chr3 186759791 186759888 -31277270 - L1MB4 LINE L1 -1 6179 6089 2466 57 0 7 chr3 186759890 186760186 -31276972 - AluY SINE Alu -17 294 1 484 285 167 16 chr3 186760362 186760734 -31276424 + L2 LINE L2 2883 3310 -3 490 341 45 26 chr3 186761975 186762239 -31274919 + L2 LINE L2 2579 2847 -467 271 329 0 0 chr3 186762514 186762584 -31274574 + L2 LINE L2 3202 3271 -1 1976 161 2 31 chr3 186762832 186763177 -31273981 + L1MC3 LINE L1 6103 6436 -1349 2442 116 11 6 chr3 186763177 186763539 -31273619 + THE1B LTR MaLR 1 364 0 1976 161 2 31 chr3 186763539 186763608 -31273550 + L1MC3 LINE L1 6436 6505 -1280 783 82 261 22 chr3 186763603 186763787 -31273371 + L1MC3 LINE L1 6871 7098 -687 * 245 289 0 58 chr3 186763788 186763892 -31273266 + MLT1F1 LTR MaLR 37 134 -433 474 175 147 21 chr3 186764051 186764194 -31272964 - L1ME4a LINE L1 0 6121 5961 182 324 28 74 chr3 186764801 186764909 -31272249 + L2 LINE L2 2563 2665 -649 257 420 35 7 chr3 186765232 186765375 -31271783 - L2 LINE L2 -17 3255 3109 211 250 0 0 chr3 186767630 186767674 -31269484 + (TA)n Simple_repeat Simple_repeat 2 45 0 240 246 164 0 chr3 186770509 186770570 -31266588 + MIR3 SINE MIR 85 155 -53 916 200 4 72 chr3 186770993 186771228 -31265930 - MER20 DNA MER1_type 0 219 1 488 298 42 31 chr3 186771982 186772173 -31264985 - MIR SINE MIR -50 212 20 623 250 123 9 chr3 186774163 186774375 -31262783 - MIR SINE MIR -20 242 7 882 183 35 18 chr3 186774914 186775083 -31262075 - FRAM SINE Alu -11 165 1 2271 91 7 7 chr3 186775661 186775958 -31261200 - AluSp SINE Alu -16 297 1 2385 167 6 51 chr3 186776678 186776891 -31260267 + L1MA9 LINE L1 5227 5448 -857 1818 160 24 0 chr3 186776891 186777178 -31259980 + AluJb SINE Alu 1 294 -18 2385 167 6 51 chr3 186777178 186777560 -31259598 + L1MA9 LINE L1 5448 5786 -519 2084 159 35 5 chr3 186777568 186777971 -31259187 + L1MA9 LINE L1 5893 6307 -5 358 192 55 0 chr3 186778319 186778392 -31258766 + L1MA9 LINE L1 5908 5984 -328 277 197 30 0 chr3 186778465 186778531 -31258627 - L1ME4a LINE L1 -208 5913 5846 263 290 85 28 chr3 186778536 186778712 -31258446 - L1ME4a LINE L1 -306 5815 5630 351 277 46 56 chr3 186778831 186779026 -31258132 - L1ME4a LINE L1 -728 5450 5258 2230 90 0 20 chr3 186779075 186779376 -31257782 + AluY SINE Alu 1 295 -16 23 0 0 0 chr3 186779416 186779439 -31257719 + AT_rich Low_complexity Low_complexity 1 23 0 289 333 78 0 chr3 186779485 186779575 -31257583 - L2 LINE L2 -18 3254 3158 21 0 0 0 chr3 186779749 186779770 -31257388 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr3 186780667 186780695 -31256463 + AT_rich Low_complexity Low_complexity 1 28 0 650 305 63 0 chr3 186783067 186783257 -31253901 + MIR SINE MIR 3 204 -58 2353 72 0 0 chr3 186783441 186783731 -31253427 + AluY SINE Alu 1 290 -21 9951 29 12 9 chr3 186783731 186785706 -31251452 + L1PA4 LINE L1 4177 6152 -3 2538 68 3 0 chr3 186786061 186786371 -31250787 - AluY SINE Alu 0 311 1 288 294 46 18 chr3 186786387 186786496 -31250662 - MLT1J2 LTR MaLR -53 397 286 263 269 0 101 chr3 186787072 186787191 -31249967 + MLT1F LTR MaLR 21 127 -415 328 268 204 6 chr3 186787306 186787463 -31249695 + MLT1H LTR MaLR 358 545 -4 21 36 0 0 chr3 186790357 186790385 -31246773 + AT_rich Low_complexity Low_complexity 1 28 0 514 324 67 5 chr3 186792295 186792505 -31244653 - MIR SINE MIR -37 225 3 324 327 10 0 chr3 186792773 186792877 -31244281 + L2 LINE L2 3157 3261 -11 32 43 0 0 chr3 186793077 186793123 -31244035 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr3 186793179 186793202 -31243956 + AT_rich Low_complexity Low_complexity 1 23 0 1068 146 10 31 chr3 186793833 186794025 -31243133 - MER5A DNA MER1_type -1 188 1 180 0 0 0 chr3 186794641 186794661 -31242497 + (A)n Simple_repeat Simple_repeat 1 20 0 2360 22 0 11 chr3 186796848 186797124 -31240034 + AluY SINE Alu 39 311 0 21 57 0 0 chr3 186798321 186798356 -31238802 + AT_rich Low_complexity Low_complexity 1 35 0 184 461 0 0 chr3 186798819 186798936 -31238222 + L3b LINE CR1 1414 1530 -53 241 309 41 0 chr3 186799298 186799395 -31237763 - MIR SINE MIR -70 138 38 1727 150 21 14 chr3 186800050 186800337 -31236821 - AluJb SINE Alu -23 289 1 225 0 0 0 chr3 186802861 186802886 -31234272 + (T)n Simple_repeat Simple_repeat 1 25 0 265 236 127 9 chr3 186802896 186803006 -31234152 - HAL1b LINE L1 -92 1256 1134 441 269 14 51 chr3 186803018 186803234 -31233924 + L1MEd LINE L1 7 214 -5905 2180 131 0 0 chr3 186804276 186804567 -31232591 + AluSx SINE Alu 4 294 -18 1877 121 37 0 chr3 186805263 186805536 -31231622 - AluSx SINE Alu -29 283 1 421 264 52 10 chr3 186806899 186807092 -31230066 - L1M4 LINE L1 -1058 5088 4888 663 236 84 11 chr3 186807272 186807450 -31229708 + MIR SINE MIR 71 261 -1 1876 175 0 3 chr3 186807557 186807854 -31229304 + AluJo SINE Alu 1 296 -16 191 291 51 43 chr3 186808192 186808309 -31228849 + MIR3 SINE MIR 41 158 -50 21 0 0 0 chr3 186809193 186809214 -31227944 + AT_rich Low_complexity Low_complexity 1 21 0 2611 40 0 37 chr3 186809891 186810214 -31226944 + AluY SINE Alu 1 311 0 600 103 35 26 chr3 186811342 186811458 -31225700 + L1MB5 LINE L1 5771 5887 -287 809 78 17 9 chr3 186811458 186811574 -31225584 + AluSg/x SINE Alu 177 293 -17 1401 178 10 24 chr3 186811575 186811873 -31225285 + L1MB5 LINE L1 5881 6174 0 333 319 14 0 chr3 186811882 186812020 -31225138 + L1MC5 LINE L1 7764 7903 -58 300 185 0 46 chr3 186812762 186812827 -31224331 - MIR SINE MIR 0 262 201 319 247 12 121 chr3 186812949 186813115 -31224043 + MIR SINE MIR 64 211 -51 216 0 0 0 chr3 186813341 186813365 -31223793 + (TTTTTG)n Simple_repeat Simple_repeat 3 26 0 2253 85 3 0 chr3 186814416 186814737 -31222421 + AluSp SINE Alu 1 322 0 387 89 0 0 chr3 186817443 186817499 -31219659 + (CA)n Simple_repeat Simple_repeat 2 57 0 320 258 121 61 chr3 186818994 186819126 -31218032 - MIR3 SINE MIR -66 142 3 239 77 0 26 chr3 186819205 186819244 -31217914 + (CAT)n Simple_repeat Simple_repeat 1 38 0 797 261 65 0 chr3 186819274 186819473 -31217685 - MIR SINE MIR -39 223 12 389 255 16 88 chr3 186819592 186819784 -31217374 + MER20B DNA MER1_type 1 178 -605 283 337 130 16 chr3 186820255 186820439 -31216719 - L2 LINE L2 -555 2759 2555 274 309 152 22 chr3 186821154 186821423 -31215735 + L2 LINE L2 2967 3270 -43 199 372 53 0 chr3 186822484 186822597 -31214561 + MIR SINE MIR 73 191 -71 206 317 78 48 chr3 186823387 186823554 -31213604 + MIR SINE MIR 19 190 -72 374 281 23 58 chr3 186823638 186823906 -31213252 + MLT1H LTR MaLR 1 300 -249 531 285 130 10 chr3 186824034 186824234 -31212924 - MIR SINE MIR -21 241 18 27 29 0 0 chr3 186825351 186825385 -31211773 + AT_rich Low_complexity Low_complexity 1 34 0 3196 140 19 2 chr3 186825721 186826256 -31210902 + L1PA16 LINE L1 5621 6164 -2 254 310 8 93 chr3 186826269 186826398 -31210760 - L2 LINE L2 -12 3301 3184 433 279 98 49 chr3 186826701 186826945 -31210213 - MIR SINE MIR 0 262 7 203 121 30 40 chr3 186827481 186827580 -31209578 + (TTATA)n Simple_repeat Simple_repeat 3 100 0 * 308 133 58 0 chr3 186827567 186827687 -31209471 + (TA)n Simple_repeat Simple_repeat 2 128 0 41 36 0 0 chr3 186827728 186827783 -31209375 + AT_rich Low_complexity Low_complexity 1 55 0 263 69 69 53 chr3 186827783 186827914 -31209244 + (TA)n Simple_repeat Simple_repeat 1 133 0 6623 61 0 0 chr3 186828082 186828916 -31208242 + L1PA7 LINE L1 5318 6151 -3 391 276 96 90 chr3 186829879 186830191 -31206967 + L2 LINE L2 2958 3271 -1 185 167 0 28 chr3 186830509 186830545 -31206613 - L2 LINE L2 -15 3298 3264 * 434 267 235 5 chr3 186830513 186830700 -31206458 - MIR SINE MIR -12 250 21 675 251 39 34 chr3 186830759 186830966 -31206192 + MIR SINE MIR 39 246 -16 312 27 0 0 chr3 186831477 186831514 -31205644 + (CA)n Simple_repeat Simple_repeat 1 37 0 2003 125 0 14 chr3 186831716 186832003 -31205155 + AluSx SINE Alu 1 283 -29 1594 185 36 0 chr3 186832248 186832529 -31204629 - AluJo SINE Alu -21 291 1 196 271 148 25 chr3 186832599 186832721 -31204437 + L2 LINE L2 3176 3312 -1 247 263 38 0 chr3 186832949 186833029 -31204129 - L1ME3A LINE L1 -125 6045 5963 229 191 0 0 chr3 186833030 186833077 -31204081 - L1MA9 LINE L1 0 6312 6266 804 152 0 53 chr3 186833078 186833229 -31203929 + FLAM_C SINE Alu 1 143 0 1424 145 4 0 chr3 186833242 186833477 -31203681 + L1M2 LINE L1 5497 5732 -580 224 345 12 0 chr3 186833845 186833929 -31203229 - MIR SINE MIR -84 124 40 303 215 25 0 chr3 186834222 186834301 -31202857 - L1MC4 LINE L1 -1348 6694 6614 438 293 0 45 chr3 186834363 186834520 -31202638 - L2 LINE L2 -35 3278 3129 1095 118 6 6 chr3 186834562 186834732 -31202426 + MLT1A1 LTR MaLR 1 170 -195 830 236 14 27 chr3 186834757 186834977 -31202181 - L2 LINE L2 -486 2828 2612 611 298 54 41 chr3 186835502 186835744 -31201414 - MIR SINE MIR -10 252 8 564 272 56 91 chr3 186836897 186837217 -31199941 + MER102b DNA MER1_type 9 317 -24 27 49 0 0 chr3 186838690 186838731 -31198427 + AT_rich Low_complexity Low_complexity 1 41 0 3702 163 40 23 chr3 186838776 186839377 -31197781 - L1MA6 LINE L1 -3 6297 5682 2525 51 3 0 chr3 186839377 186839673 -31197485 - AluY SINE Alu -14 297 1 3702 163 40 23 chr3 186839673 186839754 -31197404 - L1MA6 LINE L1 -618 5682 5604 2283 89 0 14 chr3 186840908 186841201 -31195957 + AluSx SINE Alu 14 302 -10 762 219 89 22 chr3 186841925 186842149 -31195009 - MIR SINE MIR -1 261 23 183 326 17 40 chr3 186842570 186842688 -31194470 + MIR SINE MIR 13 131 -77 551 333 163 31 chr3 186842960 186843317 -31193841 + L3 LINE CR1 1173 1576 -1 573 205 260 14 chr3 186844518 186844707 -31192451 - MIR SINE MIR -13 249 19 551 277 34 0 chr3 186845322 186845470 -31191688 - MIR SINE MIR -32 230 78 1147 222 20 20 chr3 186845749 186845997 -31191161 - MIR SINE MIR 0 262 15 1921 139 26 23 chr3 186846286 186846595 -31190563 + AluSx SINE Alu 1 310 -2 2528 64 0 10 chr3 186847050 186847361 -31189797 - AluY SINE Alu -3 308 1 236 263 163 47 chr3 186847414 186847604 -31189554 + L2 LINE L2 1945 2156 -1158 541 293 97 50 chr3 186847719 186848184 -31188974 + L2 LINE L2 2464 2950 -364 292 254 45 30 chr3 186848259 186848326 -31188832 + L2 LINE L2 3199 3266 -6 447 283 206 5 chr3 186850145 186850329 -31186829 + MIR SINE MIR 13 233 -29 251 216 35 0 chr3 186850319 186850386 -31186772 + MIR SINE MIR 85 152 -62 * 627 268 127 18 chr3 186851246 186851530 -31185628 - L2 LINE L2 -2 3311 2997 202 250 19 19 chr3 186851755 186851859 -31185299 + (CTG)n Simple_repeat Simple_repeat 3 106 0 752 279 202 47 chr3 186852878 186853683 -31183475 - L2 LINE L2 -4 3309 2346 238 261 93 45 chr3 186853941 186854085 -31183073 + MIR SINE MIR 39 187 -75 193 344 10 10 chr3 186855681 186855777 -31181381 - MIR3 SINE MIR -10 198 103 47 19 0 0 chr3 186856299 186856353 -31180805 + AT_rich Low_complexity Low_complexity 1 54 0 2264 70 0 11 chr3 186856360 186856672 -31180486 + AluY SINE Alu 1 309 0 2228 94 0 11 chr3 186856864 186857151 -31180007 + AluY SINE Alu 1 284 -27 28 48 0 0 chr3 186857151 186857193 -31179965 + AT_rich Low_complexity Low_complexity 1 42 0 326 366 84 11 chr3 186857355 186857546 -31179612 - MIR SINE MIR -10 252 48 497 298 95 29 chr3 186859128 186859370 -31177788 - MIR SINE MIR 0 262 5 1723 142 61 34 chr3 186859730 186860025 -31177133 + AluJb SINE Alu 1 303 -9 903 131 15 0 chr3 186860027 186860157 -31177001 + FLAM_C SINE Alu 2 133 0 645 294 33 0 chr3 186863068 186863282 -31173876 + MER113 DNA MER1_type? 4 224 -297 24 0 0 0 chr3 186864520 186864544 -31172614 + AT_rich Low_complexity Low_complexity 1 24 0 761 277 137 3 chr3 186864939 186865275 -31171883 - LTR16B LTR ERVL -76 388 8 253 341 167 0 chr3 186865968 186866094 -31171064 + L2 LINE L2 3122 3268 -4 235 204 0 0 chr3 186866134 186866178 -31170980 + MER116 DNA Mariner 2 45 -35 1737 253 72 31 chr3 186866182 186866724 -31170434 - L1ME1 LINE L1 -6 6160 5597 305 284 18 46 chr3 186866779 186866888 -31170270 + L2 LINE L2 3207 3312 -1 2460 66 7 0 chr3 186867933 186868235 -31168923 - AluY SINE Alu -7 304 1 586 242 100 95 chr3 186868674 186869063 -31168095 + L2 LINE L2 2922 3312 -1 382 306 160 0 chr3 186869108 186869252 -31167906 - MIR3 SINE MIR -23 185 19 816 172 0 0 chr3 186869511 186869627 -31167531 - FLAM_C SINE Alu -27 116 1 192 204 45 0 chr3 186869770 186869814 -31167344 + L2 LINE L2 3256 3301 -12 560 284 43 83 chr3 186869994 186870318 -31166840 + MLT1J LTR MaLR 119 429 -82 243 0 0 0 chr3 186870653 186870680 -31166478 + (T)n Simple_repeat Simple_repeat 1 27 0 634 261 90 17 chr3 186871650 186871884 -31165274 - LTR50 LTR ERVL -544 251 1 263 302 26 43 chr3 186871954 186872070 -31165088 + L3 LINE CR1 1259 1372 -205 2333 93 0 3 chr3 186872148 186872449 -31164709 + AluSg SINE Alu 3 302 -8 391 318 107 4 chr3 186872508 186872741 -31164417 - MIR SINE MIR -1 261 5 200 254 56 14 chr3 186872802 186872873 -31164285 - MIR SINE MIR -97 165 92 342 0 0 0 chr3 186873684 186873722 -31163436 + (TG)n Simple_repeat Simple_repeat 2 39 0 330 254 127 49 chr3 186876160 186876302 -31160856 + MIR3 SINE MIR 20 172 -36 37 52 0 0 chr3 186876951 186877009 -31160149 + AT_rich Low_complexity Low_complexity 1 58 0 3042 142 11 0 chr3 186877411 186877875 -31159283 - L1MB3 LINE L1 -4 6179 5711 846 261 37 21 chr3 186878033 186878274 -31158884 + MIR SINE MIR 13 257 -5 887 274 41 5 chr3 186879642 186879962 -31157196 - L1 LINE L1 -1419 4727 4398 192 77 0 0 chr3 186880759 186880785 -31156373 + (CCA)n Simple_repeat Simple_repeat 3 28 0 23 0 0 0 chr3 186881820 186881843 -31155315 + AT_rich Low_complexity Low_complexity 1 23 0 3122 197 24 57 chr3 186882278 186883168 -31153990 + L1MC5 LINE L1 4856 5773 -2188 2216 73 35 7 chr3 186883168 186883455 -31153703 - AluY SINE Alu -16 295 1 3122 197 24 57 chr3 186883455 186884471 -31152687 + L1MC5 LINE L1 5773 7754 -207 301 311 129 42 chr3 186884592 186884878 -31152280 - L1M4 LINE L1 -847 5299 4989 265 181 14 111 chr3 186885211 186885283 -31151875 + L2 LINE L2 3195 3259 -13 245 278 28 0 chr3 186885394 186885466 -31151692 + GA-rich Low_complexity Low_complexity 4 77 0 193 319 0 0 chr3 186885771 186885818 -31151340 - L2 LINE L2 -16 3256 3210 316 316 24 52 chr3 186885861 186886011 -31151147 + MIR SINE MIR 25 169 -61 187 219 31 31 chr3 186887997 186888061 -31149097 - MER5C DNA MER1_type -22 302 239 * 243 216 20 0 chr3 186888030 186888081 -31149077 + L2 LINE L2 3221 3272 0 684 314 41 25 chr3 186888135 186888380 -31148778 + MIR SINE MIR 14 262 0 394 284 201 13 chr3 186888497 186888726 -31148432 + MLT1K LTR MaLR 14 285 -303 341 282 92 11 chr3 186888759 186888933 -31148225 + MLT1K LTR MaLR 396 583 -5 293 308 136 30 chr3 186889162 186889331 -31147827 - MER5A DNA MER1_type -1 188 2 731 228 41 20 chr3 186890047 186890244 -31146914 + MER105 DNA DNA 2 202 -2 787 260 84 60 chr3 186890707 186891172 -31145986 + MLT1J LTR MaLR 1 476 -35 220 220 0 0 chr3 186891549 186891599 -31145559 + T-rich Low_complexity Low_complexity 1 50 0 2274 144 3 8 chr3 186892380 186892747 -31144411 + MER47A DNA MER2_type 2 366 0 619 280 18 5 chr3 186893651 186893854 -31143304 + MIR SINE MIR 50 254 -8 340 275 117 42 chr3 186893897 186894017 -31143141 + L2 LINE L2 3139 3267 -5 226 213 0 21 chr3 186895425 186895472 -31141686 + CT-rich Low_complexity Low_complexity 3 48 0 254 143 16 0 chr3 186895889 186895952 -31141206 + T-rich Low_complexity Low_complexity 2 65 0 24 53 0 0 chr3 186896558 186896596 -31140562 + AT_rich Low_complexity Low_complexity 1 38 0 27 0 0 0 chr3 186896643 186896670 -31140488 + AT_rich Low_complexity Low_complexity 1 27 0 676 198 0 0 chr3 186896825 186896941 -31140217 + FLAM_A SINE Alu 5 120 -13 266 132 19 0 chr3 186898044 186898097 -31139061 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 236 206 29 59 chr3 186898155 186898223 -31138935 + LTR16A LTR ERVL 98 163 -287 301 161 48 32 chr3 186898329 186898391 -31138767 + L2 LINE L2 3201 3263 -9 2010 120 7 0 chr3 186899637 186899952 -31137206 - AluSx SINE Alu 0 322 6 214 50 50 0 chr3 186900337 186900377 -31136781 + (TTTTTG)n Simple_repeat Simple_repeat 3 44 0 192 346 30 30 chr3 186900664 186900765 -31136393 + L2 LINE L2 3190 3290 -23 1458 176 18 0 chr3 186902251 186902478 -31134680 + AluJo SINE Alu 1 231 -81 364 208 0 0 chr3 186902478 186902550 -31134608 - HERVK9 LTR ERVK -4218 1698 1627 527 92 0 0 chr3 186902551 186902627 -31134531 - HERVK9 LTR ERVK -5253 663 588 460 110 0 27 chr3 186902873 186902946 -31134212 + AluJo SINE Alu 231 301 -11 965 191 62 19 chr3 186903072 186903282 -31133876 + MER20 DNA MER1_type 1 219 0 187 273 57 91 chr3 186904241 186904329 -31132829 + L3 LINE CR1 1039 1123 -454 678 294 137 51 chr3 186905136 186905588 -31131570 + L2 LINE L2 2823 3313 0 2204 107 3 0 chr3 186905629 186905919 -31131239 - AluSp SINE Alu 0 313 23 3552 43 18 0 chr3 186906340 186906783 -31130375 + L1PA5 LINE L1 5704 6154 0 24 32 0 0 chr3 186908019 186908050 -31129108 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr3 186908254 186908275 -31128883 + AT_rich Low_complexity Low_complexity 1 21 0 2256 63 10 17 chr3 186908670 186908971 -31128187 - AluY SINE Alu -12 299 1 54 0 0 0 chr3 186909417 186909471 -31127687 + AT_rich Low_complexity Low_complexity 1 54 0 25 0 0 0 chr3 186910072 186910097 -31127061 + AT_rich Low_complexity Low_complexity 1 25 0 210 136 0 0 chr3 186910505 186910549 -31126609 + (CAGA)n Simple_repeat Simple_repeat 2 45 0 442 198 231 8 chr3 186911037 186911158 -31126000 - MIR SINE MIR -27 235 88 311 336 76 31 chr3 186911918 186912207 -31124951 - L2 LINE L2 -750 2564 2263 307 309 72 72 chr3 186912229 186912536 -31124622 - L2 LINE L2 -1219 2095 1789 233 368 86 38 chr3 186912964 186913336 -31123822 - L2 LINE L2 -2141 1173 784 267 300 166 1 chr3 186913368 186913480 -31123678 - MIR SINE MIR -65 143 29 427 233 174 29 chr3 186914485 186914657 -31122501 - MIR SINE MIR -2 260 64 410 305 162 7 chr3 186915222 186915376 -31121782 + MIR SINE MIR 20 197 -65 261 83 0 0 chr3 186916664 186916700 -31120458 + (TG)n Simple_repeat Simple_repeat 2 37 0 2229 92 7 26 chr3 186917601 186917906 -31119252 + AluY SINE Alu 1 299 -12 226 287 92 11 chr3 186921940 186922027 -31115131 + MIR SINE MIR 51 144 -64 2659 161 10 6 chr3 186924532 186925015 -31112143 + MER31A LTR ERV1 1 485 0 224 100 25 0 chr3 186926126 186926166 -31110992 + (TGGA)n Simple_repeat Simple_repeat 1 41 0 501 300 172 40 chr3 186926278 186926551 -31110607 - L2 LINE L2 0 3313 3005 195 42 0 0 chr3 186926894 186926918 -31110240 + (CACCC)n Simple_repeat Simple_repeat 1 24 0 327 311 129 16 chr3 186927303 186927551 -31109607 + MLT1L LTR MaLR 12 287 -328 278 306 79 112 chr3 186928133 186928463 -31108695 - L2 LINE L2 0 3313 2995 420 20 0 0 chr3 186928617 186928668 -31108490 + (CA)n Simple_repeat Simple_repeat 1 100 0 420 20 0 0 chr3 186928668 186928717 -31108441 + (CA)n Simple_repeat Simple_repeat 2 50 0 1548 95 5 5 chr3 186928967 186929177 -31107981 - AluSp SINE Alu -21 292 83 266 237 65 43 chr3 186929403 186929496 -31107662 - MIR3 SINE MIR -31 177 83 307 352 0 0 chr3 186930685 186930776 -31106382 + GA-rich Low_complexity Low_complexity 2 92 0 22 0 0 0 chr3 186930936 186930958 -31106200 + AT_rich Low_complexity Low_complexity 1 22 0 183 265 0 20 chr3 186932378 186932427 -31104731 + MIR SINE MIR 93 140 -122 287 270 22 22 chr3 186932431 186932520 -31104638 - L2 LINE L2 -1 3312 3224 1531 220 47 25 chr3 186932758 186933204 -31103954 + MER31B LTR ERV1 11 466 0 247 241 0 0 chr3 186934633 186934687 -31102471 + (CA)n Simple_repeat Simple_repeat 2 55 0 247 241 0 0 chr3 186936236 186936290 -31100868 + (CA)n Simple_repeat Simple_repeat 2 55 0 820 227 59 10 chr3 186936932 186937135 -31100023 + MIR SINE MIR 50 262 0 204 280 140 47 chr3 186937192 186937299 -31099859 + L2 LINE L2 3137 3253 -19 240 345 69 21 chr3 186937645 186937790 -31099368 + L2 LINE L2 2899 3050 -222 1669 240 67 0 chr3 186938683 186939224 -31097934 - L1M3c LINE L1 -4630 2407 1831 1962 240 39 47 chr3 186939256 186939851 -31097307 - L1M3c LINE L1 -6430 600 11 388 263 79 35 chr3 186941466 186941694 -31095464 + HAL1 LINE L1 803 1040 -1467 23 0 0 0 chr3 186941724 186941747 -31095411 + AT_rich Low_complexity Low_complexity 1 23 0 2183 72 0 4 chr3 186941849 186942166 -31094992 + AluY SINE Alu 23 311 0 279 215 15 0 chr3 186942175 186942240 -31094918 + HAL1 LINE L1 1472 1537 -970 627 303 18 0 chr3 186942318 186942539 -31094619 + HAL1 LINE L1 1559 1783 -724 282 245 95 34 chr3 186943106 186943154 -31094004 + HAL1 LINE L1 2242 2286 -221 1514 177 71 71 chr3 186943154 186943550 -31093608 + MSTD LTR MaLR 1 396 0 282 245 95 34 chr3 186943550 186943648 -31093510 + HAL1 LINE L1 2286 2397 -110 1144 168 77 0 chr3 186943821 186944029 -31093129 + MER58A DNA MER1_type 1 224 0 762 194 26 13 chr3 186944095 186944250 -31092908 + FRAM SINE Alu 1 157 -9 28 29 0 0 chr3 186944681 186944716 -31092442 + AT_rich Low_complexity Low_complexity 1 35 0 248 340 19 13 chr3 186945613 186945772 -31091386 - L1ME LINE L1 -477 5644 5485 801 253 32 5 chr3 186945926 186946112 -31091046 - MIR SINE MIR -44 218 28 615 224 103 36 chr3 186946516 186946768 -31090390 + MIR SINE MIR 13 262 0 708 306 31 19 chr3 186947579 186947837 -31089321 + MIR SINE MIR 2 262 0 588 264 17 17 chr3 186948007 186948185 -31088973 + MLT1E2 LTR MaLR 385 562 -64 2294 97 3 7 chr3 186948546 186948854 -31088304 - AluSq SINE Alu -6 307 1 685 149 50 94 chr3 186950235 186950416 -31086742 + MER5A DNA MER1_type 17 189 0 361 273 207 7 chr3 186950671 186950821 -31086337 + LTR16A LTR ERVL 227 406 -44 21 0 0 0 chr3 186950821 186950842 -31086316 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr3 186951435 186951464 -31085694 + AT_rich Low_complexity Low_complexity 1 29 0 289 276 204 40 chr3 186951947 186952099 -31085059 + MER5B DNA MER1_type 1 177 -1 1456 156 0 0 chr3 186952647 186952865 -31084293 + AluSg/x SINE Alu 86 303 -9 212 167 0 0 chr3 186953391 186953433 -31083725 + A-rich Low_complexity Low_complexity 2 43 0 4258 14 0 4 chr3 186954052 186954543 -31082615 + L1PA2 LINE L1 5667 6155 0 2274 111 0 0 chr3 186954736 186955033 -31082125 + AluY SINE Alu 1 297 -14 236 276 147 80 chr3 186955385 186955548 -31081610 + MIR3 SINE MIR 29 202 -6 2223 110 7 0 chr3 186955831 186956132 -31081026 + AluSx SINE Alu 1 303 -9 380 296 158 44 chr3 186956528 186956731 -31080427 + MIR SINE MIR 37 262 0 2368 266 76 38 chr3 186957182 186958717 -31078441 - L1ME LINE L1 -4116 1964 365 2385 72 0 0 chr3 186958717 186959008 -31078150 + AluY SINE Alu 14 304 -7 2368 266 76 38 chr3 186959008 186959383 -31077775 - L1ME LINE L1 -5715 365 6 1447 205 60 40 chr3 186959595 186960006 -31077152 - MER113 DNA MER1_type? -7 514 113 1609 162 0 92 chr3 186960006 186960151 -31077007 + AluJo SINE Alu 1 103 -209 2305 104 0 13 chr3 186960151 186960467 -31076691 + AluSx SINE Alu 1 312 0 1609 162 0 92 chr3 186960467 186960636 -31076522 + AluJo SINE Alu 103 286 -26 1447 205 60 40 chr3 186960636 186960647 -31076511 - MER113 DNA MER1_type? -408 113 104 2068 127 0 0 chr3 186960647 186960951 -31076207 + AluSq SINE Alu 1 304 0 1447 205 60 40 chr3 186960951 186960979 -31076179 - MER113 DNA MER1_type? -417 104 53 624 278 102 36 chr3 186961008 186961214 -31075944 - MLT1J1 LTR MaLR -19 427 236 198 0 0 0 chr3 186961214 186961236 -31075922 + (GA)n Simple_repeat Simple_repeat 2 23 0 624 278 102 36 chr3 186961236 186961393 -31075765 - MLT1J1 LTR MaLR -210 236 40 338 293 12 10 chr3 186962728 186962818 -31074340 + MIR SINE MIR 27 109 -99 274 258 61 49 chr3 186962820 186962983 -31074175 + L1MC5 LINE L1 7753 7917 -44 21 0 0 0 chr3 186963971 186963992 -31073166 + AT_rich Low_complexity Low_complexity 1 21 0 502 273 32 99 chr3 186964668 186965012 -31072146 + MLT1I LTR MaLR 81 401 -8 1000 287 41 52 chr3 186965133 186965648 -31071510 + REP3 LTR ERV 7 515 -47 201 339 0 0 chr3 186966965 186967021 -31070137 - L2 LINE L2 -31 3241 3186 1489 251 61 53 chr3 186967129 186967522 -31069636 + L1MC4 LINE L1 7172 7575 -467 2295 113 0 3 chr3 186967522 186967822 -31069336 - AluSx SINE Alu -13 299 1 1489 251 61 53 chr3 186967822 186968169 -31068989 + L1MC4 LINE L1 7575 7918 -124 6340 24 5 0 chr3 186970484 186971228 -31065930 + L1PA4 LINE L1 5408 6155 0 5158 136 10 9 chr3 186971535 186972586 -31064572 + L1PA15 LINE L1 5104 6156 -9 442 338 98 15 chr3 186974441 186974645 -31062513 - MIR SINE MIR -19 243 23 252 0 0 0 chr3 186975173 186975201 -31061957 + (A)n Simple_repeat Simple_repeat 1 28 0 300 190 0 0 chr3 186975273 186975331 -31061827 + L1ME4a LINE L1 5972 6029 -92 303 28 0 0 chr3 186976299 186976335 -31060823 + (TTTC)n Simple_repeat Simple_repeat 2 37 0 413 291 14 7 chr3 186976359 186976507 -31060651 - MIR3 SINE MIR -6 202 54 22 0 0 0 chr3 186977767 186977789 -31059369 + AT_rich Low_complexity Low_complexity 1 22 0 1985 208 28 26 chr3 186978555 186979021 -31058137 - MLT1C LTR MaLR 0 467 1 323 333 62 16 chr3 186979191 186979320 -31057838 + L2 LINE L2 3138 3272 0 431 343 69 16 chr3 186979452 186979782 -31057376 - L2 LINE L2 -224 3048 2695 30 83 0 0 chr3 186979945 186980017 -31057141 + AT_rich Low_complexity Low_complexity 1 72 0 200 343 30 0 chr3 186980976 186981043 -31056115 + L2 LINE L2 3136 3204 -68 209 357 60 0 chr3 186981073 186981157 -31056001 - MIR SINE MIR -140 122 34 1468 198 3 56 chr3 186981938 186982257 -31054901 + AluJo SINE Alu 2 303 -9 213 167 0 0 chr3 186985859 186985913 -31051245 + T-rich Low_complexity Low_complexity 1 54 0 1226 240 21 21 chr3 186985921 186986258 -31050900 + MER58B DNA MER1_type 5 341 0 335 322 43 0 chr3 186986529 186986644 -31050514 - L2 LINE L2 -4 3268 3149 2271 74 7 10 chr3 186987873 186988197 -31048961 + AluY SINE Alu 1 311 0 355 173 49 0 chr3 186988646 186988727 -31048431 + MER53 DNA DNA 103 187 -2 478 206 42 168 chr3 186989592 186989806 -31047352 - MER5A DNA MER1_type 0 189 3 360 293 121 14 chr3 186990394 186990749 -31046409 + MLT1J2 LTR MaLR 19 411 -39 279 0 0 0 chr3 186990956 186990987 -31046171 + (A)n Simple_repeat Simple_repeat 1 31 0 253 329 14 0 chr3 186990989 186991062 -31046096 + MER5A DNA MER1_type 54 127 -62 1535 195 44 41 chr3 186991082 186991446 -31045712 + MLT1A1 LTR MaLR 1 365 0 540 284 84 40 chr3 186991961 186992257 -31044901 + L2 LINE L2 2884 3192 -121 204 191 21 21 chr3 186992262 186992309 -31044849 + MIR SINE MIR 216 262 0 25 31 0 0 chr3 186992403 186992435 -31044723 + AT_rich Low_complexity Low_complexity 1 32 0 470 264 124 10 chr3 186992453 186992646 -31044512 + MIR SINE MIR 20 234 -28 23 78 0 0 chr3 186994949 186995000 -31042158 + AT_rich Low_complexity Low_complexity 1 51 0 251 146 58 78 chr3 186995003 186995106 -31042052 + L1MD3 LINE L1 7895 7995 0 466 300 9 5 chr3 186995240 186995450 -31041708 - L1ME4a LINE L1 -267 5854 5644 2136 88 9 64 chr3 186996329 186996659 -31040499 + AluSx SINE Alu 1 312 0 320 218 271 0 chr3 186996663 186996796 -31040362 + MER102b DNA MER1_type 172 340 -1 302 298 43 0 chr3 186998186 186998280 -31038878 + L2 LINE L2 3207 3304 -9 3171 205 64 26 chr3 186998348 186999144 -31038014 - L1ME1 LINE L1 0 6166 5341 252 135 77 0 chr3 187000075 187000127 -31037031 + MIR SINE MIR 107 162 -100 480 231 191 53 chr3 187001482 187001538 -31035620 - MIR SINE MIR -2 260 213 1828 164 6 50 chr3 187001538 187001856 -31035302 - AluSx SINE Alu -8 304 1 480 231 191 53 chr3 187001856 187002024 -31035134 - MIR SINE MIR -49 213 5 315 248 77 26 chr3 187002540 187002657 -31034501 + L2 LINE L2 3182 3304 -9 358 238 282 15 chr3 187003020 187003226 -31033932 + L1ME4a LINE L1 5661 5921 -200 2425 97 3 0 chr3 187004241 187004552 -31032606 + AluSx SINE Alu 1 312 0 323 346 158 8 chr3 187004714 187004841 -31032317 - L2 LINE L2 -6 3266 3121 949 218 6 0 chr3 187005204 187005383 -31031775 - MER5A DNA MER1_type -9 180 1 526 161 19 93 chr3 187005518 187005680 -31031478 + L1MC3 LINE L1 6821 6970 -815 666 88 10 0 chr3 187005788 187005890 -31031268 + AluSg/x SINE Alu 207 309 0 949 218 6 0 chr3 187006543 187006722 -31030436 - MER5A DNA MER1_type -9 180 1 1828 166 88 49 chr3 187006857 187007151 -31030007 + L1MC3 LINE L1 6821 7143 -642 2364 125 14 6 chr3 187007151 187007512 -31029646 + THE1B LTR MaLR 1 364 0 1828 166 88 49 chr3 187007512 187007705 -31029453 + L1MC3 LINE L1 7143 7327 -458 1177 287 24 45 chr3 187010172 187010593 -31026565 - L2 LINE L2 0 3313 2902 628 295 154 40 chr3 187010850 187011572 -31025586 - L2 LINE L2 -21 3251 2443 192 77 0 0 chr3 187011611 187011637 -31025521 + (A)n Simple_repeat Simple_repeat 1 26 0 270 0 0 0 chr3 187011781 187011811 -31025347 + (CA)n Simple_repeat Simple_repeat 1 30 0 839 202 74 54 chr3 187012860 187013118 -31024040 - ORSL DNA AcHobo -8 267 5 22 70 0 0 chr3 187013249 187013292 -31023866 + AT_rich Low_complexity Low_complexity 1 43 0 239 356 44 11 chr3 187014552 187014642 -31022516 - MIR SINE MIR -162 100 8 781 262 83 9 chr3 187015065 187015294 -31021864 - MIR SINE MIR -1 261 16 1483 151 0 0 chr3 187015359 187015578 -31021580 - AluSx SINE Alu -91 221 3 185 184 41 0 chr3 187015640 187015689 -31021469 + (TATG)n Simple_repeat Simple_repeat 1 51 0 498 236 155 19 chr3 187016386 187016547 -31020611 - MER5A DNA MER1_type -3 186 4 407 285 28 42 chr3 187017671 187017815 -31019343 + MIR SINE MIR 33 174 -88 1508 164 4 8 chr3 187021680 187021936 -31015222 - AluSx SINE Alu -15 297 43 2160 128 43 6 chr3 187022611 187022962 -31014196 - THE1B LTR MaLR 0 364 1 830 159 20 50 chr3 187023328 187023529 -31013629 + L1MB3 LINE L1 5980 6174 -9 574 268 47 23 chr3 187024841 187025018 -31012140 - MIR3 SINE MIR -6 202 18 294 357 72 51 chr3 187025081 187025414 -31011744 + L2 LINE L2 2932 3271 -1 423 330 28 23 chr3 187025514 187025690 -31011468 + MER5B DNA MER1_type 1 177 -1 217 216 62 136 chr3 187026193 187026355 -31010803 - MIR SINE MIR -50 212 63 291 109 0 0 chr3 187026684 187026730 -31010428 - MADE1 DNA Mariner 0 80 35 573 63 13 0 chr3 187026737 187026816 -31010342 + MADE1 DNA Mariner 1 80 0 499 275 99 57 chr3 187027002 187027213 -31009945 - MIR SINE MIR -15 247 28 818 198 47 5 chr3 187027432 187027624 -31009534 + MER20 DNA MER1_type 20 219 0 521 182 10 0 chr3 187029214 187029313 -31007845 - Charlie1 DNA MER1_type -10 2751 2652 5693 118 33 1 chr3 187029351 187030954 -31006204 - L1PA15 LINE L1 -5 6160 4531 1040 189 47 0 chr3 187030969 187031181 -31005977 - Charlie1 DNA MER1_type -2535 226 5 333 253 93 55 chr3 187032994 187033176 -31003982 + MER5A DNA MER1_type 1 189 0 667 276 88 72 chr3 187033467 187033829 -31003329 - L2 LINE L2 -27 3286 2919 231 299 22 104 chr3 187033939 187034073 -31003085 + L3 LINE CR1 1147 1269 -308 2446 90 3 0 chr3 187034100 187034412 -31002746 - AluSp SINE Alu 0 313 1 352 314 92 39 chr3 187034426 187034633 -31002525 + L3 LINE CR1 1271 1488 -89 23 0 0 0 chr3 187035344 187035367 -31001791 + AT_rich Low_complexity Low_complexity 1 23 0 2319 108 47 8 chr3 187035655 187036016 -31001142 + THE1C LTR MaLR 1 375 0 1934 142 3 3 chr3 187036418 187036700 -31000458 - AluSx SINE Alu -30 282 1 755 226 14 112 chr3 187039500 187039787 -30997371 - MER102a DNA MER1_type -1 329 71 269 204 20 102 chr3 187039877 187039975 -30997183 + MIR3 SINE MIR 7 96 -112 685 282 58 68 chr3 187041303 187041744 -30995414 - LTR16A LTR ERVL -10 440 1 190 312 71 26 chr3 187042114 187042268 -30994890 + L2 LINE L2 1890 2050 -1264 197 353 92 71 chr3 187042685 187043011 -30994147 + L2 LINE L2 2934 3266 -6 886 287 49 0 chr3 187043710 187043954 -30993204 - MIR SINE MIR -2 260 5 378 293 116 28 chr3 187043979 187044160 -30992998 + MIR SINE MIR 60 256 -6 243 323 156 0 chr3 187045374 187045470 -30991688 - L2 LINE L2 -29 3243 3133 535 14 14 14 chr3 187045660 187045733 -30991425 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 182 288 225 12 chr3 187045840 187045920 -30991238 + MIR SINE MIR 50 146 -116 548 282 55 0 chr3 187046477 187046640 -30990518 - MIR SINE MIR -48 214 43 270 306 126 0 chr3 187046636 187046747 -30990411 + MIR SINE MIR 133 257 -5 * 283 247 12 47 chr3 187046773 187046858 -30990300 - MIR SINE MIR -155 107 26 973 271 40 4 chr3 187047189 187047436 -30989722 + MIR SINE MIR 2 257 -5 319 305 19 9 chr3 187047470 187047575 -30989583 + L2 LINE L2 3203 3308 -5 198 225 0 70 chr3 187047645 187047716 -30989442 - MIR3 SINE MIR -34 174 109 259 347 53 0 chr3 187047752 187047847 -30989311 - MIR SINE MIR -93 115 16 21 36 0 0 chr3 187048090 187048118 -30989040 + AT_rich Low_complexity Low_complexity 1 28 0 2236 86 0 4 chr3 187048658 187048937 -30988221 + AluSg SINE Alu 1 278 -32 396 59 0 0 chr3 187048940 187048991 -30988167 + (CA)n Simple_repeat Simple_repeat 2 52 0 663 182 42 55 chr3 187050186 187050351 -30986807 + MER103 DNA DNA 3 165 -1 1574 228 42 76 chr3 187050481 187051007 -30986151 + MLT1J LTR MaLR 1 508 -3 2280 106 10 0 chr3 187051140 187051441 -30985717 - AluSx SINE Alu -8 304 1 694 308 118 15 chr3 187051451 187051789 -30985369 + MLT1I LTR MaLR 33 405 -4 203 129 0 145 chr3 187052759 187052821 -30984337 - L2 LINE L2 -3 3269 3217 260 307 13 0 chr3 187053211 187053286 -30983872 + MIR SINE MIR 65 140 -68 307 269 239 8 chr3 187053296 187053430 -30983728 + MER5A DNA MER1_type 9 173 -16 181 369 62 44 chr3 187054910 187055070 -30982088 + L2 LINE L2 3108 3270 -2 261 288 122 22 chr3 187057357 187057496 -30979662 + MIR SINE MIR 20 172 -90 204 356 15 61 chr3 187057671 187057803 -30979355 + L2 LINE L2 3046 3171 -101 372 276 138 0 chr3 187057908 187058053 -30979105 - MIR SINE MIR -12 250 86 258 311 78 0 chr3 187058315 187058405 -30978753 - L2 LINE L2 -15 3257 3161 908 270 52 79 chr3 187060195 187060751 -30976407 + MER34 LTR ERV1 2 542 0 2125 129 7 0 chr3 187061419 187061729 -30975429 + AluSx SINE Alu 1 312 0 21 0 0 0 chr3 187061886 187061907 -30975251 + AT_rich Low_complexity Low_complexity 1 21 0 504 186 178 0 chr3 187062809 187062938 -30974220 + MER104 DNA Tc2 7 158 -22 273 362 43 72 chr3 187063246 187063522 -30973636 + L2 LINE L2 3005 3272 0 674 261 39 39 chr3 187064103 187064363 -30972795 + MIR SINE MIR 3 262 0 3107 167 25 31 chr3 187064840 187065445 -30971713 - L1MB7 LINE L1 0 6184 5584 464 323 114 48 chr3 187067717 187068033 -30969125 + L2 LINE L2 2927 3263 -9 909 248 86 40 chr3 187068334 187068810 -30968348 + L1ME4a LINE L1 5621 6118 -3 1793 154 4 14 chr3 187069203 187069483 -30967675 + AluJo SINE Alu 1 277 -35 234 0 0 0 chr3 187069493 187069519 -30967639 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 214 212 73 134 chr3 187070159 187070338 -30966820 - MER5B DNA MER1_type 0 178 11 209 303 46 37 chr3 187070243 187070352 -30966806 + MER5A DNA MER1_type 80 189 0 * 451 196 78 0 chr3 187070709 187070811 -30966347 + MIR SINE MIR 153 262 0 1210 247 128 10 chr3 187071815 187072228 -30964930 + HAL1 LINE L1 1573 2034 -473 293 280 151 35 chr3 187072227 187072253 -30964905 + L1MC4a LINE L1 5916 5938 -1870 * 2372 94 10 0 chr3 187072253 187072562 -30964596 + AluSx SINE Alu 1 312 0 293 280 151 35 chr3 187072562 187072767 -30964391 + L1MC4a LINE L1 5938 6174 -1634 333 228 132 37 chr3 187073132 187073268 -30963890 - MER20B DNA MER1_type -634 149 1 448 281 70 16 chr3 187073640 187073768 -30963390 - MIR3 SINE MIR -62 146 12 651 265 28 22 chr3 187073941 187074122 -30963036 - MIR SINE MIR -48 214 33 1624 172 13 23 chr3 187075347 187075649 -30961509 - AluJo SINE Alu -9 303 5 226 304 88 8 chr3 187076265 187076390 -30960768 - L3b LINE CR1 -166 1417 1283 406 294 50 28 chr3 187077442 187077622 -30959536 + MIR SINE MIR 29 212 -50 226 333 0 0 chr3 187078236 187078287 -30958871 + L2 LINE L2 3204 3254 -18 861 260 104 30 chr3 187079107 187079416 -30957742 - MLT1G LTR MaLR -2 553 150 2662 46 0 0 chr3 187079416 187079722 -30957436 + AluY SINE Alu 1 306 -5 861 260 104 30 chr3 187079722 187079845 -30957313 - MLT1G LTR MaLR -405 150 38 1265 151 4 44 chr3 187079985 187080210 -30956948 - AluJo SINE Alu -12 300 85 373 246 96 40 chr3 187081450 187081575 -30955583 - MIR SINE MIR -65 143 34 382 278 58 58 chr3 187081580 187081753 -30955405 + MIR SINE MIR 8 180 -82 233 301 34 62 chr3 187082344 187082520 -30954638 + L2 LINE L2 2884 3054 -218 634 252 62 33 chr3 187082669 187082879 -30954279 + MIR SINE MIR 8 223 -39 216 158 0 0 chr3 187082950 187082988 -30954170 + (TCCA)n Simple_repeat Simple_repeat 4 41 0 924 308 119 14 chr3 187083944 187084372 -30952786 + L2 LINE L2 2841 3313 0 2315 92 23 0 chr3 187084617 187084920 -30952238 + AluSx SINE Alu 1 310 -2 273 119 0 0 chr3 187084923 187084965 -30952193 + (GAAA)n Simple_repeat Simple_repeat 2 43 0 673 274 131 21 chr3 187085154 187085446 -30951712 + L1MC4 LINE L1 7323 7639 -169 207 366 65 32 chr3 187086114 187086237 -30950921 + L2 LINE L2 3138 3264 -8 459 333 22 11 chr3 187087219 187087399 -30949759 + MIR3 SINE MIR 22 203 -5 2052 148 71 20 chr3 187087538 187087941 -30949217 + L1MB7 LINE L1 5593 6006 -178 2080 163 29 26 chr3 187087950 187088052 -30949106 + L1MB8 LINE L1 5741 5841 -493 1576 233 10 44 chr3 187088052 187088438 -30948720 - MLT1A2 LTR MaLR -1 373 1 2080 163 29 26 chr3 187088438 187088766 -30948392 + L1MB8 LINE L1 5841 6333 -1 550 255 147 25 chr3 187088794 187089026 -30948132 + MIR SINE MIR 7 262 0 3249 149 36 13 chr3 187089770 187090300 -30946858 - MER44D DNA MER2_type -6 599 3 230 240 178 85 chr3 187090938 187090967 -30946191 + MIR SINE MIR 60 85 -177 2353 105 0 0 chr3 187090967 187091272 -30945886 - AluSg SINE Alu -5 305 1 230 240 178 85 chr3 187091272 187091371 -30945787 + MIR SINE MIR 85 200 -62 24 0 0 0 chr3 187091509 187091533 -30945625 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr3 187091734 187091758 -30945400 + AT_rich Low_complexity Low_complexity 1 24 0 351 231 103 60 chr3 187091845 187091962 -30945196 - L2 LINE L2 -2 3270 3149 233 329 67 40 chr3 187092034 187092183 -30944975 + MIR3 SINE MIR 50 202 -6 8163 30 1 0 chr3 187092339 187093299 -30943859 + L1PA4 LINE L1 4254 5214 -932 7905 36 1 0 chr3 187093399 187094347 -30942811 + L1PA4 LINE L1 5206 6154 -1 2118 130 7 7 chr3 187094895 187095202 -30941956 + AluSx SINE Alu 1 307 -5 5890 32 0 0 chr3 187095260 187095908 -30941250 + L1PA5 LINE L1 5496 6143 -11 331 319 147 28 chr3 187096463 187096789 -30940369 + L2 LINE L2 1242 1606 -1708 * 334 279 121 48 chr3 187096780 187096945 -30940213 + MIR SINE MIR 65 241 -21 971 273 180 39 chr3 187097009 187097771 -30939387 - L2 LINE L2 -15 3298 2388 823 225 32 21 chr3 187099265 187099452 -30937706 + MER5A DNA MER1_type 1 189 0 1739 174 10 0 chr3 187099715 187100013 -30937145 + AluJo SINE Alu 12 312 0 39 74 0 0 chr3 187100044 187100125 -30937033 + AT_rich Low_complexity Low_complexity 1 81 0 543 208 0 0 chr3 187101004 187101110 -30936048 - MIR SINE MIR -56 206 101 258 333 46 36 chr3 187101879 187102185 -30934973 + HAL1b LINE L1 367 675 -673 213 250 25 12 chr3 187102705 187102785 -30934373 + A-rich Low_complexity Low_complexity 2 82 0 209 146 21 0 chr3 187102906 187102954 -30934204 + (CA)n Simple_repeat Simple_repeat 1 49 0 449 280 63 96 chr3 187102994 187103284 -30933874 - L1M4 LINE L1 -1467 4679 4381 2031 128 40 7 chr3 187103284 187103582 -30933576 - AluSx SINE Alu -4 308 1 449 280 63 96 chr3 187103582 187103786 -30933372 - L1M4 LINE L1 -1765 4381 4172 1834 172 0 7 chr3 187103786 187104106 -30933052 - AluJo SINE Alu 0 318 1 449 280 63 96 chr3 187104106 187104243 -30932915 - L1M4 LINE L1 -1974 4172 4032 1472 265 103 25 chr3 187104243 187104813 -30932345 - MLT1L LTR MaLR 0 615 1 449 280 63 96 chr3 187104813 187105032 -30932126 - L1M4 LINE L1 -2114 4032 3854 319 367 32 13 chr3 187105528 187105686 -30931472 + L2 LINE L2 3098 3258 -14 596 343 28 5 chr3 187105715 187105931 -30931227 - MIR SINE MIR -10 252 32 182 189 132 19 chr3 187107186 187107239 -30929919 - L2 LINE L2 -9 3263 3205 2538 81 0 0 chr3 187108409 187108718 -30928440 + AluY SINE Alu 1 309 -2 268 297 183 35 chr3 187108718 187108913 -30928245 + MIR SINE MIR 31 258 -4 235 122 0 0 chr3 187108930 187108971 -30928187 + HY3 scRNA scRNA 59 99 -2 281 153 259 0 chr3 187109652 187109737 -30927421 + MER112 DNA MER1_type 146 252 -8 200 265 122 0 chr3 187110000 187110049 -30927109 - L2 LINE L2 -65 3207 3153 198 313 48 0 chr3 187110132 187110215 -30926943 - L2 LINE L2 -299 2973 2887 242 119 71 0 chr3 187110542 187110584 -30926574 - L1MB7 LINE L1 -9 6175 6131 2956 188 27 4 chr3 187110587 187111146 -30926012 - L1MB7 LINE L1 -108 6076 5505 1575 143 71 37 chr3 187112896 187113190 -30923968 + AluJo SINE Alu 1 304 -8 186 43 0 0 chr3 187113919 187113942 -30923216 + (A)n Simple_repeat Simple_repeat 1 23 0 848 169 0 0 chr3 187114208 187114359 -30922799 - FLAM_C SINE Alu 0 133 1 634 240 78 22 chr3 187114387 187114494 -30922664 - MER5A DNA MER1_type 0 189 67 1616 188 38 0 chr3 187114494 187114781 -30922377 + AluJb SINE Alu 3 300 -12 634 240 78 22 chr3 187114781 187114852 -30922306 - MER5A DNA MER1_type -122 67 1 2151 103 0 0 chr3 187116253 187116572 -30920586 + AluSx SINE Alu 1 319 0 237 320 13 0 chr3 187116914 187116989 -30920169 + MIR SINE MIR 64 139 -123 822 256 58 8 chr3 187117015 187117257 -30919901 + L1ME4a LINE L1 5566 5819 -302 506 217 197 25 chr3 187117261 187117464 -30919694 + L1MC5 LINE L1 7606 7843 -118 2285 167 78 19 chr3 187117495 187118096 -30919062 - L1MB7 LINE L1 0 6184 5514 5736 56 5 0 chr3 187118105 187118766 -30918392 - L1PA7 LINE L1 -8 6146 5483 440 278 129 12 chr3 187118811 187119066 -30918092 + L1ME4a LINE L1 5813 6097 -24 1901 123 0 0 chr3 187119135 187119396 -30917762 + AluSx SINE Alu 38 298 -14 559 332 162 37 chr3 187120122 187120381 -30916777 - L2 LINE L2 -3 3310 2982 2708 198 38 15 chr3 187120381 187120907 -30916251 + MLT1F LTR MaLR 3 540 -2 559 332 162 37 chr3 187120907 187121048 -30916110 - L2 LINE L2 -331 2982 2860 184 232 80 107 chr3 187121075 187121187 -30915971 + L2 LINE L2 3205 3313 0 182 262 0 24 chr3 187121747 187121789 -30915369 - MER5A DNA MER1_type -52 137 97 * 278 239 119 85 chr3 187121757 187121933 -30915225 - MIR3 SINE MIR -26 182 1 393 22 0 0 chr3 187122074 187122120 -30915038 + (CA)n Simple_repeat Simple_repeat 2 47 0 1422 216 44 0 chr3 187124587 187124883 -30912275 - AluJo SINE Alu -1 311 3 212 355 124 8 chr3 187125157 187125278 -30911880 - L2 LINE L2 -1 3271 3137 532 249 19 83 chr3 187126195 187126400 -30910758 + MIR3 SINE MIR 6 197 -11 255 79 0 0 chr3 187128560 187128598 -30908560 + (CA)n Simple_repeat Simple_repeat 2 39 0 303 28 0 0 chr3 187129020 187129056 -30908102 + (CA)n Simple_repeat Simple_repeat 2 37 0 1753 211 45 22 chr3 187131452 187131585 -30905573 - L1MB8 LINE L1 -1 6177 6048 1944 118 3 63 chr3 187131585 187131900 -30905258 - AluSx SINE Alu -11 301 6 1753 211 45 22 chr3 187131900 187132254 -30904904 - L1MB8 LINE L1 -130 6048 5679 429 277 160 11 chr3 187132673 187132861 -30904297 + MIR SINE MIR 26 241 -21 422 265 63 83 chr3 187133937 187134180 -30902978 + MLT1H LTR MaLR 85 354 -195 4434 170 7 11 chr3 187134666 187135504 -30901654 - L1P5 LINE L1 -561 5590 4758 1888 166 0 10 chr3 187135504 187135812 -30901346 - AluSx SINE Alu -7 305 1 4434 170 7 11 chr3 187135812 187136161 -30900997 - L1P5 LINE L1 -1393 4758 4409 4003 72 22 47 chr3 187136161 187136375 -30900783 + L1PB1 LINE L1 5586 5804 -347 297 0 0 0 chr3 187136375 187136408 -30900750 + (TG)n Simple_repeat Simple_repeat 2 34 0 4003 72 22 47 chr3 187136408 187136769 -30900389 + L1PB1 LINE L1 5804 6150 -1 282 223 39 85 chr3 187137104 187137203 -30899955 - L1ME4a LINE L1 -34 6087 5994 2265 138 130 16 chr3 187137203 187137587 -30899571 + MSTA LTR MaLR 1 428 0 282 223 39 85 chr3 187137587 187137617 -30899541 - L1ME4a LINE L1 -127 5994 5964 227 296 52 0 chr3 187137726 187137841 -30899317 - MER103 DNA DNA 0 166 46 360 266 199 41 chr3 187137945 187138216 -30898942 - HAL1 LINE L1 -1125 1382 1069 541 135 0 11 chr3 187139701 187139790 -30897368 - MER53 DNA DNA 0 189 102 4467 179 23 9 chr3 187139843 187140837 -30896321 + L1MB8 LINE L1 4422 5426 -743 711 97 0 19 chr3 187140842 187140945 -30896213 + LTR7 LTR ERV1 348 448 -2 14433 89 11 25 chr3 187140947 187143980 -30893178 + HERVH LTR ERV1 1 2987 -4726 930 135 20 0 chr3 187143974 187144122 -30893036 + HERVH LTR ERV1 3140 3290 -4423 * 3321 120 6 2 chr3 187144112 187144612 -30892546 + HERVH LTR ERV1 3492 3993 -3720 4209 145 3 16 chr3 187144614 187145285 -30891873 + HERVH LTR ERV1 4488 5149 -2564 1407 128 18 9 chr3 187145286 187145504 -30891654 + HERVH LTR ERV1 5600 5819 -1894 2560 77 48 13 chr3 187145504 187145881 -30891277 + HERVH LTR ERV1 7324 7713 0 2747 90 58 21 chr3 187145881 187146313 -30890845 + LTR7 LTR ERV1 1 448 -2 623 85 0 0 chr3 187146315 187146397 -30890761 - AluY SINE Alu -227 83 2 21 0 0 0 chr3 187146434 187146455 -30890703 + AT_rich Low_complexity Low_complexity 1 21 0 2437 86 0 0 chr3 187146484 187146786 -30890372 + AluSc SINE Alu 1 302 -7 35 88 0 0 chr3 187147489 187147580 -30889578 + AT_rich Low_complexity Low_complexity 1 91 0 2616 200 54 21 chr3 187147582 187148277 -30888881 + L1MB8 LINE L1 5417 6171 -7 252 167 56 0 chr3 187148277 187148331 -30888827 + MER53 DNA DNA 121 177 -12 * 392 119 0 0 chr3 187148292 187148351 -30888807 - MER53 DNA DNA -128 61 3 382 331 24 24 chr3 187148749 187148915 -30888243 - MER5A DNA MER1_type 0 189 24 210 343 111 0 chr3 187148953 187149052 -30888106 - MER5A DNA MER1_type -76 113 4 207 299 138 0 chr3 187149193 187149280 -30887878 - MIR SINE MIR -3 259 161 246 202 21 106 chr3 187149382 187149476 -30887682 + LTR16C LTR ERVL 84 169 -322 227 276 0 0 chr3 187149472 187149530 -30887628 - MER97b DNA MER1_type? -532 521 464 * 1736 178 119 10 chr3 187149530 187149917 -30887241 + L1ME3 LINE L1 5702 6130 -32 1052 322 25 25 chr3 187149953 187150431 -30886727 + HERV16 LTR ERVL 2456 2933 -2063 718 231 53 29 chr3 187150465 187150673 -30886485 + LTR50 LTR ERVL 471 683 -112 1583 216 41 39 chr3 187150737 187151125 -30886033 - MLT2C1 LTR ERVL -7 390 2 266 237 8 110 chr3 187151126 187151244 -30885914 - MLT2C1 LTR ERVL -101 296 191 682 256 45 45 chr3 187151365 187151588 -30885570 + LTR16C LTR ERVL 269 491 0 902 285 85 35 chr3 187151607 187152240 -30884918 + L2 LINE L2 2646 3313 0 185 297 47 0 chr3 187152629 187152693 -30884465 + L2 LINE L2 3234 3300 -13 1995 173 16 18 chr3 187152697 187153166 -30883992 + MLT2B1 LTR ERVL 1 513 -2 250 62 0 0 chr3 187153182 187153214 -30883944 - MLT2C2 LTR ERVL 0 464 433 272 286 170 9 chr3 187153218 187153330 -30883828 - MIR SINE MIR -130 132 3 228 67 0 0 chr3 187155559 187155589 -30881569 + (CA)n Simple_repeat Simple_repeat 2 31 0 1264 207 51 4 chr3 187155655 187155892 -30881266 + MLT1F LTR MaLR 1 248 -294 1546 100 22 22 chr3 187155914 187156145 -30881013 - L1PA11 LINE L1 0 6174 5944 231 305 66 24 chr3 187156152 187156319 -30880839 + L1ME LINE L1 5690 5863 -303 4771 124 21 24 chr3 187157486 187158242 -30878916 - L1MA9 LINE L1 -5 6307 5554 804 216 52 5 chr3 187158514 187158708 -30878450 + LTR16C LTR ERVL 289 491 0 464 302 114 81 chr3 187159389 187159985 -30877173 - L2 LINE L2 -453 2861 2246 681 199 23 8 chr3 187160289 187160420 -30876738 - MLT1H LTR MaLR -2 547 415 188 260 110 80 chr3 187160636 187160736 -30876422 - MIR SINE MIR -148 114 12 237 336 26 18 chr3 187161166 187161279 -30875879 + L2 LINE L2 3175 3288 -25 432 189 40 0 chr3 187162097 187162171 -30874987 - MER58A DNA MER1_type -7 100 24 2089 103 0 63 chr3 187162571 187162920 -30874238 + AluSq SINE Alu 1 330 0 1648 172 26 70 chr3 187163544 187163928 -30873230 + MLT1A2 LTR MaLR 4 370 -4 1390 154 105 14 chr3 187164041 187164364 -30872794 + AluJb SINE Alu 1 349 0 735 171 79 12 chr3 187165328 187165492 -30871666 - L2 LINE L2 -1 3312 3138 473 254 14 72 chr3 187165600 187165738 -30871420 + MIR3 SINE MIR 56 185 -23 25 0 0 0 chr3 187165793 187165818 -30871340 + AT_rich Low_complexity Low_complexity 1 25 0 508 288 58 38 chr3 187168197 187168437 -30868721 - L1MC4 LINE L1 -158 7884 7640 1777 138 87 7 chr3 187168527 187168816 -30868342 + AluSx SINE Alu 1 312 0 188 322 17 102 chr3 187168972 187169090 -30868068 - L3 LINE CR1 -78 1499 1392 277 290 113 16 chr3 187169306 187169430 -30867728 - MIR SINE MIR -79 183 48 393 291 82 0 chr3 187169465 187169575 -30867583 + L3 LINE CR1 1436 1554 -23 2237 213 218 24 chr3 187170385 187171136 -30866022 - L2 LINE L2 -519 2795 1899 576 226 71 61 chr3 187171176 187171388 -30865770 - L1ME LINE L1 -297 5824 5611 23 33 0 0 chr3 187171978 187172008 -30865150 + AT_rich Low_complexity Low_complexity 1 30 0 277 324 47 23 chr3 187172713 187172969 -30864189 + L1M4 LINE L1 4455 4716 -1430 1397 213 33 17 chr3 187173172 187173511 -30863647 + MLT1A1 LTR MaLR 25 426 -2 273 279 101 55 chr3 187173511 187173595 -30863563 + HAL1 LINE L1 1214 1293 -1214 2126 99 4 0 chr3 187173595 187173868 -30863290 + AluSp SINE Alu 1 274 -39 273 279 101 55 chr3 187173868 187174002 -30863156 + HAL1 LINE L1 1293 1442 -1065 467 192 129 107 chr3 187174011 187174078 -30863080 + HAL1 LINE L1 1504 1568 -939 927 193 75 115 chr3 187174078 187174399 -30862759 - AluJo SINE Alu 0 309 1 467 192 129 107 chr3 187174399 187174554 -30862604 + HAL1 LINE L1 1568 1732 -775 265 203 125 0 chr3 187174602 187174666 -30862492 + MLT1L LTR MaLR 2 73 -542 390 296 28 0 chr3 187174714 187174822 -30862336 + MLT1L LTR MaLR 167 277 -338 2386 84 3 0 chr3 187174825 187175133 -30862025 + AluSp SINE Alu 4 312 -1 184 158 35 0 chr3 187175173 187175230 -30861928 + GA-rich Low_complexity Low_complexity 3 61 0 1141 184 56 47 chr3 187175274 187175432 -30861726 + MLT1F1 LTR MaLR 3 158 -409 1138 215 34 0 chr3 187175432 187175641 -30861517 - MER20 DNA MER1_type 0 219 4 1141 184 56 47 chr3 187175641 187175924 -30861234 + MLT1F1 LTR MaLR 158 567 0 781 292 121 0 chr3 187175929 187176169 -30860989 + MLT1L LTR MaLR 328 596 -19 2496 162 32 72 chr3 187176581 187176967 -30860191 + MLT1D LTR MaLR 1 401 -104 1968 123 65 0 chr3 187176967 187177260 -30859898 - AluSx SINE Alu 0 312 1 1812 163 0 35 chr3 187177261 187177580 -30859578 - AluJo SINE Alu -4 308 1 2496 162 32 72 chr3 187177580 187177717 -30859441 + MLT1D LTR MaLR 400 505 0 1983 261 108 15 chr3 187178033 187178577 -30858581 - MLT1G1 LTR MaLR 0 595 1 217 379 28 14 chr3 187178898 187179043 -30858115 + L2 LINE L2 675 821 -2493 206 261 22 0 chr3 187179321 187179367 -30857791 + MIR SINE MIR 16 62 -200 2692 42 0 0 chr3 187180065 187180376 -30856782 - AluY SINE Alu 0 311 1 528 198 0 0 chr3 187180598 187180706 -30856452 - MIR3 SINE MIR -25 183 75 222 37 0 0 chr3 187180741 187180768 -30856390 + (A)n Simple_repeat Simple_repeat 1 27 0 1904 160 106 3 chr3 187182144 187182475 -30854683 + MLT1A1 LTR MaLR 1 365 0 1831 114 103 0 chr3 187182787 187183059 -30854099 - AluSx SINE Alu -12 300 1 383 251 40 97 chr3 187183192 187183350 -30853808 - L1MC5 LINE L1 -45 7916 7773 2101 45 8 0 chr3 187183350 187183595 -30853563 + AluY SINE Alu 44 290 -21 383 251 40 97 chr3 187183595 187183663 -30853495 - L1MC5 LINE L1 -188 7773 7703 961 177 21 42 chr3 187183668 187183860 -30853298 + L1MC3 LINE L1 7140 7327 -458 728 223 53 15 chr3 187183844 187184050 -30853108 + L1MD3 LINE L1 7781 7994 -1 * 247 290 129 0 chr3 187184432 187184525 -30852633 - MIR SINE MIR -54 208 104 3280 158 34 38 chr3 187184581 187184985 -30852173 + L1P4 LINE L1 4793 5197 -969 2345 80 0 0 chr3 187184985 187185284 -30851874 + AluY SINE Alu 1 299 -12 3280 158 34 38 chr3 187185284 187185885 -30851273 + L1P4 LINE L1 5197 5783 -383 731 182 25 0 chr3 187185887 187186008 -30851150 + FLAM_C SINE Alu 1 124 -19 359 71 20 50 chr3 187186022 187186121 -30851037 + (TTTAA)n Simple_repeat Simple_repeat 5 100 0 234 185 66 33 chr3 187186164 187186315 -30850843 + (TTAA)n Simple_repeat Simple_repeat 3 158 0 881 128 0 0 chr3 187186318 187186443 -30850715 + L1PA16 LINE L1 5494 5618 -548 362 173 37 43 chr3 187186448 187186610 -30850548 + (TTAA)n Simple_repeat Simple_repeat 3 163 0 21 0 0 31 chr3 187186631 187186649 -30850509 + AT_rich Low_complexity Low_complexity 1 19 -12 1492 170 23 30 chr3 187186649 187186914 -30850244 - AluJo SINE Alu -49 263 1 21 0 0 31 chr3 187186914 187186927 -30850231 + AT_rich Low_complexity Low_complexity 19 31 0 2489 137 15 27 chr3 187186931 187186946 -30850212 + L1PA16 LINE L1 5768 5782 -384 2241 98 3 3 chr3 187186946 187187241 -30849917 + AluY SINE Alu 1 295 -16 2489 137 15 27 chr3 187187241 187187628 -30849530 + L1PA16 LINE L1 5782 6165 -1 458 284 54 21 chr3 187187761 187187916 -30849242 + MIR SINE MIR 20 181 -27 1537 134 146 4 chr3 187188187 187188448 -30848710 - AluSx SINE Alu -14 298 1 2144 107 38 0 chr3 187188700 187188989 -30848169 + AluSq SINE Alu 1 300 -13 22 0 0 0 chr3 187189659 187189681 -30847477 + AT_rich Low_complexity Low_complexity 1 22 0 2168 102 3 13 chr3 187189857 187190161 -30846997 + AluSq SINE Alu 1 301 -12 461 282 47 35 chr3 187191064 187191234 -30845924 + MIR SINE MIR 40 211 -51 2308 73 0 3 chr3 187191522 187191840 -30845318 - AluSp SINE Alu 0 318 2 299 299 153 6 chr3 187191932 187192109 -30845049 - MIR SINE MIR 0 262 60 306 78 78 0 chr3 187192126 187192177 -30844981 - L1MB8 LINE L1 -172 6006 5952 921 80 0 0 chr3 187192216 187192328 -30844830 + AluSg/x SINE Alu 189 300 -12 3324 153 35 14 chr3 187192332 187192907 -30844251 - L1MB8 LINE L1 -236 5948 5362 489 17 0 0 chr3 187193069 187193127 -30844031 + (TG)n Simple_repeat Simple_repeat 1 58 0 984 286 24 68 chr3 187193307 187193716 -30843442 + LTR16C LTR ERVL 96 486 -5 1518 216 3 26 chr3 187194302 187194608 -30842550 - AluJo SINE Alu -13 299 1 344 270 53 42 chr3 187194759 187194945 -30842213 + MIR3 SINE MIR 6 188 -58 290 312 78 7 chr3 187194967 187195121 -30842037 + L1MB4 LINE L1 5690 5854 -267 1159 125 60 42 chr3 187195157 187195305 -30841853 + L1MB4 LINE L1 5959 6114 -66 1848 157 28 0 chr3 187195305 187195591 -30841567 - AluJb SINE Alu -18 294 1 1159 125 60 42 chr3 187195591 187195658 -30841500 + L1MB4 LINE L1 6114 6178 -2 181 163 41 0 chr3 187195884 187195933 -30841225 + (TA)n Simple_repeat Simple_repeat 1 51 0 584 338 161 26 chr3 187196223 187196869 -30840289 - L2 LINE L2 -428 2886 2154 302 348 150 20 chr3 187196935 187197688 -30839470 - L2 LINE L2 -1524 1790 940 25 0 0 0 chr3 187197741 187197766 -30839392 + AT_rich Low_complexity Low_complexity 1 25 0 465 267 148 0 chr3 187197989 187198191 -30838967 + L1MC4 LINE L1 7725 7956 -86 370 178 30 170 chr3 187198226 187198361 -30838797 + MER20 DNA MER1_type 17 132 -87 1994 120 155 16 chr3 187198365 187198732 -30838426 + MSTA LTR MaLR 5 422 -6 482 149 35 0 chr3 187198739 187198826 -30838332 + MER20 DNA MER1_type 130 219 0 184 292 0 0 chr3 187199177 187199225 -30837933 - MIR SINE MIR -15 247 200 2369 103 3 0 chr3 187199302 187199614 -30837544 - AluSp SINE Alu 0 313 1 406 304 22 132 chr3 187199645 187200046 -30837112 - L2 LINE L2 0 3272 2916 929 233 6 0 chr3 187200087 187200263 -30836895 - MER5A DNA MER1_type -12 177 1 213 252 8 94 chr3 187200368 187200495 -30836663 + MIR SINE MIR 90 205 -57 883 139 0 36 chr3 187201112 187201249 -30835909 + FLAM_C SINE Alu 1 132 -1 262 0 53 0 chr3 187201578 187201616 -30835542 + (TCTA)n Simple_repeat Simple_repeat 2 41 0 336 244 110 37 chr3 187202585 187202749 -30834409 + L1ME4a LINE L1 5945 6120 -1 2243 94 3 23 chr3 187203151 187203458 -30833700 - AluSp SINE Alu -5 308 8 204 297 121 73 chr3 187203579 187203811 -30833347 - MIR SINE MIR 0 262 20 258 233 17 0 chr3 187205370 187205430 -30831728 - MER5B DNA MER1_type 0 178 118 230 0 33 0 chr3 187205768 187205798 -30831360 + (TA)n Simple_repeat Simple_repeat 2 32 0 719 113 96 9 chr3 187205803 187205918 -30831240 - AluJb SINE Alu -181 131 7 1912 151 19 19 chr3 187205934 187206246 -30830912 - AluSx SINE Alu 0 312 1 211 242 97 0 chr3 187206246 187206308 -30830850 - L2 LINE L2 -12 3260 3193 548 302 62 13 chr3 187206894 187207119 -30830039 - MIR SINE MIR 0 262 27 361 237 54 11 chr3 187207120 187207213 -30829945 + L2 LINE L2 3217 3313 0 382 348 79 17 chr3 187207338 187207516 -30829642 + MIR3 SINE MIR 7 195 -13 1670 247 55 12 chr3 187207719 187208209 -30828949 - L1MC4a LINE L1 0 7808 7298 287 213 111 46 chr3 187208245 187208353 -30828805 + MIR SINE MIR 129 243 -19 288 189 0 0 chr3 187209272 187209325 -30827833 - L1MD3 LINE L1 -341 7654 7602 1110 237 5 79 chr3 187209441 187209621 -30827537 - L2 LINE L2 -690 2624 2487 2113 100 3 39 chr3 187209621 187209932 -30827226 - AluSx SINE Alu -12 300 1 1110 237 5 79 chr3 187209932 187210144 -30827014 - L2 LINE L2 -827 2487 2261 2300 86 3 10 chr3 187210194 187210498 -30826660 - AluSg SINE Alu -8 302 1 657 231 124 67 chr3 187210595 187210672 -30826486 - MLT1H LTR MaLR -4 545 474 1973 137 7 10 chr3 187210672 187210972 -30826186 - AluJb SINE Alu -13 299 1 657 231 124 67 chr3 187210972 187211176 -30825982 - MLT1H LTR MaLR -75 474 248 315 244 133 0 chr3 187211364 187211454 -30825704 + MIR SINE MIR 161 262 0 2366 100 0 3 chr3 187211857 187212188 -30824970 - AluSg SINE Alu 0 330 1 316 251 0 30 chr3 187212540 187212707 -30824451 + (TATG)n Simple_repeat Simple_repeat 3 164 0 392 249 0 28 chr3 187212718 187212939 -30824219 + (TATG)n Simple_repeat Simple_repeat 1 214 0 328 260 29 0 chr3 187212950 187213123 -30824035 + (TA)n Simple_repeat Simple_repeat 1 178 0 226 205 128 13 chr3 187213141 187213219 -30823939 - L1MC4 LINE L1 -1339 6703 6617 844 112 0 0 chr3 187213934 187214041 -30823117 - U6 snRNA snRNA 0 107 1 1158 263 56 28 chr3 187214203 187214594 -30822564 - MLT1I LTR MaLR -2 407 6 312 258 126 48 chr3 187214651 187214818 -30822340 + L1ME4a LINE L1 5469 5648 -473 492 244 61 10 chr3 187214820 187215017 -30822141 + L1ME4a LINE L1 5713 5919 -202 3824 177 21 6 chr3 187215171 187215871 -30821287 - L1ME1 LINE L1 -5 6161 5451 189 107 0 0 chr3 187216254 187216282 -30820876 + (T)n Simple_repeat Simple_repeat 1 28 0 23 33 0 0 chr3 187216303 187216333 -30820825 + AT_rich Low_complexity Low_complexity 1 30 0 516 255 62 21 chr3 187216504 187216649 -30820509 + MIR SINE MIR 14 164 -98 294 194 28 102 chr3 187216731 187216839 -30820319 - MIR SINE MIR -52 210 111 643 239 19 38 chr3 187216949 187217108 -30820050 + MER58B DNA MER1_type 186 341 0 704 236 63 26 chr3 187217109 187217300 -30819858 - MIR SINE MIR -47 215 18 294 311 157 34 chr3 187217343 187217578 -30819580 - L2 LINE L2 -6 3307 3044 323 138 207 23 chr3 187218711 187218798 -30818360 - MLT1C LTR MaLR -349 118 16 191 273 23 0 chr3 187219116 187219160 -30817998 - L2 LINE L2 -18 3295 3251 284 285 9 46 chr3 187219201 187219321 -30817837 - MIR SINE MIR -85 123 8 1792 154 10 17 chr3 187220040 187220338 -30816820 - AluJo SINE Alu -16 296 1 192 348 29 22 chr3 187220342 187220480 -30816678 + L2 LINE L2 2733 2871 -443 1394 253 95 50 chr3 187220578 187220860 -30816298 + MLT1H LTR MaLR 1 269 -280 2398 50 40 3 chr3 187220860 187221157 -30816001 + AluY SINE Alu 1 308 -3 1394 253 95 50 chr3 187221157 187221399 -30815759 + MLT1H LTR MaLR 269 549 0 187 359 113 0 chr3 187221416 187221522 -30815636 - L2 LINE L2 -3 3269 3152 184 364 66 16 chr3 187221670 187221791 -30815367 + L2 LINE L2 2595 2721 -593 224 289 87 39 chr3 187221929 187222033 -30815125 + L2 LINE L2 2945 3053 -219 2287 85 3 0 chr3 187222227 187222552 -30814606 - AluSp SINE Alu 0 326 1 29 0 0 0 chr3 187222938 187222967 -30814191 + AT_rich Low_complexity Low_complexity 1 29 0 24 67 0 0 chr3 187223420 187223465 -30813693 + AT_rich Low_complexity Low_complexity 1 45 0 2815 170 48 8 chr3 187224072 187224608 -30812550 + L1MB7 LINE L1 5567 6124 -60 21 36 0 0 chr3 187224609 187224637 -30812521 + AT_rich Low_complexity Low_complexity 1 28 0 646 95 11 11 chr3 187224681 187224776 -30812382 + L1PB3 LINE L1 6057 6151 -3 226 127 0 36 chr3 187225339 187225394 -30811764 + (TTTAA)n Simple_repeat Simple_repeat 3 55 0 196 333 0 0 chr3 187225663 187225729 -30811429 - L3 LINE CR1 -18 1559 1494 745 148 0 84 chr3 187225761 187225916 -30811242 - FLAM_C SINE Alu 0 143 2 270 338 144 7 chr3 187226062 187226243 -30810915 - MIR SINE MIR -57 205 7 255 384 0 2 chr3 187226364 187226491 -30810667 + MIR SINE MIR 19 144 -64 649 256 53 25 chr3 187226539 187226765 -30810393 + MLT1H1 LTR MaLR 8 235 -320 6573 107 0 1 chr3 187226765 187227690 -30809468 - L1PA8 LINE L1 -2031 4115 3192 8601 98 17 1 chr3 187227690 187229664 -30807494 + L1PA8 LINE L1 4145 6172 0 573 236 100 56 chr3 187229671 187230019 -30807139 + MLT1F LTR MaLR 227 533 -9 364 252 117 9 chr3 187230029 187230140 -30807018 + MIR SINE MIR 140 262 0 2206 109 0 31 chr3 187230584 187230904 -30806254 - AluSg SINE Alu 0 310 1 2300 93 0 7 chr3 187231109 187231409 -30805749 - AluY SINE Alu -13 298 1 246 32 0 0 chr3 187231464 187231495 -30805663 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1925 156 0 3 chr3 187231497 187231780 -30805378 - AluJo SINE Alu -30 282 1 195 256 0 0 chr3 187231948 187231991 -30805167 - MIR SINE MIR -109 153 111 2213 162 28 30 chr3 187232155 187232714 -30804444 + MLT2A2 LTR ERVL 1 554 0 443 276 181 33 chr3 187232787 187233030 -30804128 - MER46C DNA MER2_type -2 336 58 247 170 0 0 chr3 187233095 187233142 -30804016 - MER46C DNA MER2_type -287 51 5 297 0 0 0 chr3 187233977 187234010 -30803148 + (CTG)n Simple_repeat Simple_repeat 1 33 0 2310 79 0 0 chr3 187234364 187234656 -30802502 - AluY SINE Alu -19 292 1 529 279 93 12 chr3 187234659 187234831 -30802327 + MIR SINE MIR 28 213 -49 2183 66 0 0 chr3 187235494 187235765 -30801393 + AluY SINE Alu 41 311 0 3596 193 20 2 chr3 187236549 187237190 -30799968 - MER82 DNA MER2_type 0 653 1 2873 154 52 8 chr3 187237226 187237731 -30799427 - L1MA9 LINE L1 -1 6311 5785 267 89 54 0 chr3 187237740 187237796 -30799362 + (TA)n Simple_repeat Simple_repeat 2 60 0 1777 148 7 14 chr3 187238888 187239171 -30797987 - AluJb SINE Alu -31 281 1 480 224 30 36 chr3 187239178 187239345 -30797813 - L1MA9 LINE L1 -415 5749 5599 2462 82 3 0 chr3 187239345 187239649 -30797509 + AluSp SINE Alu 1 305 -8 480 224 30 36 chr3 187239649 187239666 -30797492 - L1MA9 LINE L1 -565 5599 5583 690 297 42 15 chr3 187239692 187239955 -30797203 - HERV16 LTR ERVL -3062 1934 1665 754 168 90 24 chr3 187239961 187239979 -30797179 - Ricksha DNA DNA -2884 362 347 2017 169 154 57 chr3 187239979 187240453 -30796705 - MLT2B1 LTR ERVL 0 520 1 10493 157 17 17 chr3 187240453 187240930 -30796228 - ERVL-B1 LTR ERVL -7 5757 5281 754 168 90 24 chr3 187240453 187240601 -30796557 - Ricksha DNA DNA -2899 347 185 * 2166 101 17 10 chr3 187240930 187241228 -30795930 - AluSx SINE Alu -12 300 1 10493 157 17 17 chr3 187241228 187242463 -30794695 - ERVL-B1 LTR ERVL -482 5282 4045 2277 200 17 77 chr3 187242463 187242529 -30794629 - MLT2B3 LTR ERVL 0 554 486 405 0 0 0 chr3 187242529 187242574 -30794584 + (TA)n Simple_repeat Simple_repeat 2 46 0 * 477 34 0 0 chr3 187242573 187242632 -30794526 + (GA)n Simple_repeat Simple_repeat 2 60 0 2277 200 17 77 chr3 187242574 187243106 -30794052 - MLT2B3 LTR ERVL -68 486 51 397 101 0 127 chr3 187243191 187243270 -30793888 - MLT2B3 LTR ERVL -483 71 3 2704 189 40 29 chr3 187243270 187243826 -30793332 - ERVL-B1 LTR ERVL -1716 4048 3487 1840 163 14 0 chr3 187243830 187244118 -30793040 - MER1B DNA MER1_type -9 330 39 8322 153 43 2 chr3 187244343 187245659 -30791499 - ERVL-B1 LTR ERVL -2279 3485 2117 293 113 0 19 chr3 187245642 187245695 -30791463 + ERVL LTR ERVL 3910 3961 -1803 * 1093 314 88 43 chr3 187245836 187245931 -30791227 - ERVL-B1 LTR ERVL -3556 1440 1351 1926 183 53 6 chr3 187245931 187246253 -30790905 - MER1B DNA MER1_type 0 337 1 1093 314 88 43 chr3 187246253 187246354 -30790804 - ERVL-B1 LTR ERVL -3645 1351 1256 2429 95 0 0 chr3 187246354 187246658 -30790500 - AluSq SINE Alu -9 304 1 1871 188 33 43 chr3 187246665 187247059 -30790099 - MLT1B LTR MaLR 0 390 1 1093 314 88 43 chr3 187247059 187247532 -30789626 - ERVL-B1 LTR ERVL -3745 1251 731 324 350 89 6 chr3 187247571 187247751 -30789407 - ERVL-B1 LTR ERVL -4341 655 461 626 326 61 4 chr3 187247863 187248124 -30789034 - ERVL-B1 LTR ERVL -4713 283 8 1008 192 122 9 chr3 187248128 187248357 -30788801 - LTR16A1 LTR ERVL 0 457 203 2592 65 0 0 chr3 187248390 187248697 -30788461 - AluY SINE Alu -4 307 1 237 169 310 0 chr3 187248717 187248788 -30788370 - LTR16A1 LTR ERVL -364 93 1 238 227 91 0 chr3 187248939 187249005 -30788153 - L1ME LINE L1 -387 5846 5775 * 859 238 36 2 chr3 187249003 187249444 -30787714 - L1ME LINE L1 -2332 3883 3274 5273 238 74 59 chr3 187249445 187250562 -30786596 - L1MEc LINE L1 -3074 3141 2042 2199 109 0 0 chr3 187250562 187250847 -30786311 - AluSq SINE Alu -22 291 7 5273 238 74 59 chr3 187250847 187251665 -30785493 - L1MEc LINE L1 -4173 2042 1237 1580 203 33 0 chr3 187251665 187251965 -30785193 - AluJo SINE Alu -2 310 1 5273 238 74 59 chr3 187251965 187253162 -30783996 - L1MEc LINE L1 -4978 1237 4 195 220 0 0 chr3 187253215 187253265 -30783893 + (TG)n Simple_repeat Simple_repeat 2 51 0 463 269 73 41 chr3 187253427 187253646 -30783512 - LTR33 LTR ERVL -4 517 292 633 275 42 91 chr3 187253710 187254182 -30782976 - LTR16A1 LTR ERVL -8 449 1 497 190 36 44 chr3 187254225 187254362 -30782796 - LTR33 LTR ERVL -376 145 10 189 74 0 0 chr3 187255302 187255329 -30781829 + (TC)n Simple_repeat Simple_repeat 1 27 0 267 31 0 0 chr3 187255333 187255365 -30781793 + (TG)n Simple_repeat Simple_repeat 1 32 0 319 255 158 82 chr3 187255367 187255563 -30781595 - MLT1K LTR MaLR -28 560 350 338 340 0 0 chr3 187255864 187255958 -30781200 - MIR SINE MIR -112 150 57 534 277 59 30 chr3 187255967 187256169 -30780989 + MIR SINE MIR 2 209 -53 197 264 57 0 chr3 187256563 187256616 -30780542 - L2 LINE L2 0 3313 3258 371 268 64 51 chr3 187257465 187257622 -30779536 + MIR3 SINE MIR 3 161 -47 245 299 13 13 chr3 187257743 187257820 -30779338 + Charlie8 DNA MER1_type 2341 2417 0 2135 129 3 0 chr3 187257953 187258256 -30778902 - AluSx SINE Alu -4 308 5 2569 17 0 3 chr3 187259902 187260224 -30776934 + AluYa5 SINE Alu 1 311 0 546 298 56 9 chr3 187261140 187261500 -30775658 + LTR16B LTR ERVL 3 410 -54 2091 283 115 23 chr3 187262172 187263245 -30773913 - L2 LINE L2 0 3313 2098 2318 97 0 0 chr3 187263245 187263545 -30773613 + AluY SINE Alu 1 300 -11 2091 283 115 23 chr3 187263545 187263761 -30773397 - L2 LINE L2 -1215 2098 1903 650 271 15 30 chr3 187263768 187263971 -30773187 - LTR67 LTR ERVL 0 557 358 361 259 12 24 chr3 187264002 187264087 -30773071 - MER5B DNA MER1_type -1 177 94 2407 75 0 23 chr3 187264487 187264792 -30772366 + AluSx SINE Alu 1 298 -14 22 35 0 0 chr3 187265391 187265420 -30771738 + AT_rich Low_complexity Low_complexity 1 29 0 327 281 55 35 chr3 187265425 187265624 -30771534 - L1ME4a LINE L1 -2 6119 5917 333 0 0 0 chr3 187267053 187267090 -30770068 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 183 295 139 83 chr3 187267090 187267297 -30769861 - L2 LINE L2 -32 3281 3046 2069 125 7 10 chr3 187267297 187267601 -30769557 + AluSq SINE Alu 1 303 -10 183 295 139 83 chr3 187267601 187267732 -30769426 - L2 LINE L2 -267 3046 2924 943 210 44 0 chr3 187268112 187268293 -30768865 - MER5A DNA MER1_type 0 189 1 2180 100 3 42 chr3 187268542 187268851 -30768307 - AluSg SINE Alu -13 297 1 526 226 212 13 chr3 187268923 187269110 -30768048 + MIR SINE MIR 36 256 -6 25 0 0 0 chr3 187270396 187270421 -30766737 + AT_rich Low_complexity Low_complexity 1 25 0 379 272 41 31 chr3 187270510 187270705 -30766453 - L1ME4a LINE L1 -260 5861 5665 443 239 35 18 chr3 187270929 187271042 -30766116 - MIR3 SINE MIR -34 174 60 1336 148 14 40 chr3 187271329 187271552 -30765606 - MER20 DNA MER1_type 0 219 3 1219 8 23 25 chr3 187272141 187272493 -30764665 + (TTC)n Simple_repeat Simple_repeat 1 351 0 195 42 0 0 chr3 187272497 187272521 -30764637 + (TTCTCC)n Simple_repeat Simple_repeat 5 28 0 2018 100 7 7 chr3 187272522 187272802 -30764356 - AluSc SINE Alu -3 306 27 317 94 170 0 chr3 187272802 187272855 -30764303 - L1PA8 LINE L1 -14 6158 6097 266 320 117 8 chr3 187272855 187272983 -30764175 - MIR SINE MIR -97 165 24 2245 97 7 7 chr3 187273755 187274053 -30763105 - AluSg SINE Alu -12 298 1 342 210 0 0 chr3 187274094 187274156 -30763002 - MIR SINE MIR -122 140 79 1787 139 0 4 chr3 187276055 187276314 -30760844 - AluSx SINE Alu -16 296 39 23 0 0 0 chr3 187276498 187276521 -30760637 + AT_rich Low_complexity Low_complexity 1 23 0 2097 206 22 24 chr3 187276955 187277101 -30760057 - L1MB8 LINE L1 0 6178 6033 2010 114 0 63 chr3 187277101 187277418 -30759740 - AluSx SINE Alu -10 302 6 2097 206 22 24 chr3 187277418 187277772 -30759386 - L1MB8 LINE L1 -145 6033 5679 424 270 159 16 chr3 187278191 187278380 -30758778 + MIR SINE MIR 26 241 -21 422 265 63 83 chr3 187279459 187279702 -30757456 + MLT1H LTR MaLR 85 354 -195 4434 169 7 11 chr3 187280188 187281026 -30756132 - L1P5 LINE L1 -561 5590 4758 1870 169 0 10 chr3 187281026 187281334 -30755824 - AluSx SINE Alu -7 305 1 4434 169 7 11 chr3 187281334 187281683 -30755475 - L1P5 LINE L1 -1393 4758 4409 3998 76 22 43 chr3 187281683 187281897 -30755261 + L1PB1 LINE L1 5586 5803 -348 405 0 0 0 chr3 187281897 187281942 -30755216 + (TG)n Simple_repeat Simple_repeat 2 46 0 3998 76 22 43 chr3 187281942 187282301 -30754857 + L1PB1 LINE L1 5803 6150 -1 282 223 39 85 chr3 187282636 187282735 -30754423 - L1ME4a LINE L1 -34 6087 5994 2265 138 130 16 chr3 187282735 187283119 -30754039 + MSTA LTR MaLR 1 428 0 282 223 39 85 chr3 187283119 187283149 -30754009 - L1ME4a LINE L1 -127 5994 5964 227 296 52 0 chr3 187283258 187283373 -30753785 - MER103 DNA DNA 0 166 46 360 266 199 41 chr3 187283477 187283748 -30753410 - HAL1 LINE L1 -1125 1382 1069 541 135 0 11 chr3 187285233 187285322 -30751836 - MER53 DNA DNA 0 189 102 4494 178 23 9 chr3 187285375 187286369 -30750789 + L1MB8 LINE L1 4422 5426 -743 711 97 0 19 chr3 187286374 187286477 -30750681 + LTR7 LTR ERV1 348 448 -2 20583 93 9 24 chr3 187286479 187289512 -30747646 + HERVH LTR ERV1 1 2987 -4726 930 135 20 0 chr3 187289506 187289654 -30747504 + HERVH LTR ERV1 3140 3290 -4423 * 3321 124 6 2 chr3 187289644 187290144 -30747014 + HERVH LTR ERV1 3492 3993 -3720 4257 143 3 16 chr3 187290146 187290817 -30746341 + HERVH LTR ERV1 4488 5149 -2564 1393 133 18 9 chr3 187290818 187291036 -30746122 + HERVH LTR ERV1 5600 5819 -1894 2614 74 45 13 chr3 187291036 187291414 -30745744 + HERVH LTR ERV1 7324 7713 0 2740 93 58 21 chr3 187291415 187291846 -30745312 + LTR7 LTR ERV1 2 448 -2 623 85 0 0 chr3 187291848 187291930 -30745228 - AluY SINE Alu -227 83 2 21 0 0 0 chr3 187291967 187291988 -30745170 + AT_rich Low_complexity Low_complexity 1 21 0 2412 87 0 0 chr3 187292017 187292316 -30744842 + AluSc SINE Alu 1 299 -10 35 88 0 0 chr3 187293019 187293110 -30744048 + AT_rich Low_complexity Low_complexity 1 91 0 2631 200 54 21 chr3 187293112 187293807 -30743351 + L1MB8 LINE L1 5417 6171 -7 283 148 56 0 chr3 187293807 187293861 -30743297 + MER53 DNA DNA 121 177 -12 * 420 102 0 0 chr3 187293822 187293881 -30743277 - MER53 DNA DNA -128 61 3 371 337 24 24 chr3 187294279 187294445 -30742713 - MER5A DNA MER1_type 0 189 24 187 354 111 0 chr3 187294483 187294582 -30742576 - MER5A DNA MER1_type -76 113 4 215 299 138 0 chr3 187294723 187294810 -30742348 - MIR SINE MIR -3 259 161 252 202 21 106 chr3 187294912 187295006 -30742152 + LTR16C LTR ERVL 84 169 -322 227 276 0 0 chr3 187295002 187295060 -30742098 - MER97a DNA MER1_type? -373 521 464 * 1756 175 115 10 chr3 187295048 187295447 -30741711 + L1ME3 LINE L1 5690 6130 -32 988 347 19 19 chr3 187295483 187295961 -30741197 + ERVL LTR ERVL 2494 2971 -2793 700 240 89 27 chr3 187295978 187296203 -30740955 + LTR50 LTR ERVL 445 683 -112 600 216 75 70 chr3 187296267 187296466 -30740692 - MLT2C1 LTR ERVL -7 390 191 679 256 45 45 chr3 187296587 187296810 -30740348 + LTR16C LTR ERVL 269 491 0 866 288 79 38 chr3 187296829 187297462 -30739696 + L2 LINE L2 2646 3313 0 197 297 47 0 chr3 187297850 187297914 -30739244 + L2 LINE L2 3234 3300 -13 1962 173 16 18 chr3 187297918 187298387 -30738771 + MLT2B1 LTR ERVL 1 513 -2 243 62 0 0 chr3 187298403 187298435 -30738723 - MLT2B2 LTR ERVL 0 515 484 278 286 170 9 chr3 187298439 187298551 -30738607 - MIR SINE MIR -130 132 3 228 67 0 0 chr3 187300780 187300810 -30736348 + (CA)n Simple_repeat Simple_repeat 2 31 0 1251 207 51 4 chr3 187300876 187301113 -30736045 + MLT1F LTR MaLR 1 248 -294 1431 100 22 22 chr3 187301135 187301366 -30735792 - L1PA11 LINE L1 0 6174 5944 321 318 109 21 chr3 187301373 187301612 -30735546 + L1PA11 LINE L1 5693 5952 -222 4422 124 21 24 chr3 187302707 187303463 -30733695 - L1MA9 LINE L1 -5 6307 5554 801 216 52 5 chr3 187303735 187303929 -30733229 + LTR16C LTR ERVL 289 491 0 461 304 112 79 chr3 187304610 187305206 -30731952 - L2 LINE L2 -453 2861 2246 671 199 23 8 chr3 187305510 187305641 -30731517 - MLT1H LTR MaLR -2 547 415 226 336 26 18 chr3 187306387 187306500 -30730658 + L2 LINE L2 3175 3288 -25 426 169 42 0 chr3 187307321 187307392 -30729766 - MER58A DNA MER1_type -10 97 24 2076 103 0 63 chr3 187307792 187308141 -30729017 + AluSq SINE Alu 1 330 0 1485 169 26 70 chr3 187308765 187309149 -30728009 + MLT1A2 LTR MaLR 4 370 -4 1322 156 109 14 chr3 187309262 187309584 -30727574 + AluJb SINE Alu 1 348 0 733 171 79 12 chr3 187310548 187310712 -30726446 - L2 LINE L2 -1 3312 3138 478 254 14 72 chr3 187310820 187310958 -30726200 + MIR3 SINE MIR 56 185 -23 25 0 0 0 chr3 187311013 187311038 -30726120 + AT_rich Low_complexity Low_complexity 1 25 0 478 288 58 38 chr3 187313417 187313657 -30723501 - L1MC4 LINE L1 -158 7884 7640 1759 138 87 7 chr3 187313747 187314036 -30723122 + AluSx SINE Alu 1 312 0 181 322 21 91 chr3 187314192 187314335 -30722823 - L3 LINE CR1 -78 1499 1367 288 316 129 12 chr3 187314479 187314650 -30722508 - MIR SINE MIR -24 238 48 382 291 82 0 chr3 187314685 187314795 -30722363 + L3 LINE CR1 1436 1554 -23 2204 213 218 24 chr3 187315605 187316356 -30720802 - L2 LINE L2 -519 2795 1899 518 231 71 61 chr3 187316396 187316608 -30720550 - L1ME LINE L1 -297 5824 5611 23 33 0 0 chr3 187317197 187317227 -30719931 + AT_rich Low_complexity Low_complexity 1 30 0 4773 224 67 22 chr3 187317932 187319198 -30717960 + L1PB4 LINE L1 4455 5817 -339 432 0 0 0 chr3 187319198 187319246 -30717912 + (CA)n Simple_repeat Simple_repeat 2 49 0 4773 224 67 22 chr3 187319246 187319602 -30717556 + L1PB4 LINE L1 5817 6156 0 309 303 202 27 chr3 187319626 187319814 -30717344 + L1ME4a LINE L1 5320 5540 -2268 654 223 142 24 chr3 187319903 187320235 -30716923 + L1ME4a LINE L1 5746 6116 -5 322 211 126 11 chr3 187321037 187321132 -30716026 - L2 LINE L2 -551 2763 2658 1541 156 0 8 chr3 187321500 187321738 -30715420 + AluJo SINE Alu 13 248 -64 406 221 0 0 chr3 187321789 187321857 -30715301 + MER113 DNA MER1_type? 454 521 0 1368 221 108 86 chr3 187322161 187322576 -30714582 + MLT1L LTR MaLR 1 434 -181 1830 179 0 7 chr3 187322576 187322877 -30714281 + AluJo SINE Alu 1 299 -13 1368 221 108 86 chr3 187322877 187323063 -30714095 + MLT1L LTR MaLR 434 615 0 21 0 0 0 chr3 187323323 187323344 -30713814 + AT_rich Low_complexity Low_complexity 1 21 0 502 184 9 28 chr3 187323745 187323854 -30713304 - MER91B DNA MER1_type -35 155 49 391 253 130 13 chr3 187324057 187324211 -30712947 + MIR SINE MIR 91 262 0 1021 262 127 12 chr3 187325282 187326036 -30711122 - L1ME3 LINE L1 -208 5954 5101 1658 209 57 72 chr3 187326063 187326576 -30710582 + MLT1D LTR MaLR 1 505 0 218 190 0 190 chr3 187326684 187326763 -30710395 - MER5B DNA MER1_type 0 178 115 321 267 13 0 chr3 187326777 187326852 -30710306 + MER5B DNA MER1_type 50 125 -53 237 169 15 77 chr3 187326861 187326926 -30710232 - L1MC4 LINE L1 -120 7922 7862 375 23 0 0 chr3 187328404 187328448 -30708710 + (TG)n Simple_repeat Simple_repeat 2 45 0 264 59 0 0 chr3 187328539 187328573 -30708585 + (TG)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr3 187328933 187328955 -30708203 + AT_rich Low_complexity Low_complexity 1 22 0 508 146 115 62 chr3 187329494 187329624 -30707534 + FLAM_A SINE Alu 1 137 -5 830 156 0 0 chr3 187329764 187329899 -30707259 + L1MA3 LINE L1 6166 6300 -5 24 32 0 0 chr3 187330215 187330246 -30706912 + AT_rich Low_complexity Low_complexity 1 31 0 231 36 0 0 chr3 187330406 187330434 -30706724 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 284 0 28 0 chr3 187330433 187330469 -30706689 + (TA)n Simple_repeat Simple_repeat 2 38 0 268 221 116 23 chr3 187331924 187332010 -30705148 - MER5A DNA MER1_type 0 189 96 2816 282 75 38 chr3 187332094 187332851 -30704307 + L1MC4a LINE L1 3768 4496 -1650 216 67 0 0 chr3 187332851 187332881 -30704277 + (TAATG)n Simple_repeat Simple_repeat 1 30 0 2816 282 75 38 chr3 187332881 187333004 -30704154 + L1MC4a LINE L1 4496 4613 -1533 2473 58 0 26 chr3 187333004 187333312 -30703846 - AluY SINE Alu -11 300 1 2816 282 75 38 chr3 187333312 187334739 -30702419 + L1MC4a LINE L1 4613 5364 -782 42627 73 19 11 chr3 187334771 187342194 -30694964 + L1PA3 LINE L1 219 6166 0 4246 196 88 62 chr3 187341160 187342440 -30694718 + L1MC4 LINE L1 6725 8037 -5 * 1387 71 11 5 chr3 187343153 187343337 -30693821 + L1PA7 LINE L1 5970 6154 0 298 156 0 65 chr3 187344306 187344383 -30692775 - Charlie7 DNA MER1_type -33 2579 2508 5159 206 44 32 chr3 187344463 187345118 -30692040 - L1MB7 LINE L1 -26 6656 6010 198 0 0 0 chr3 187345118 187345140 -30692018 + (TTA)n Simple_repeat Simple_repeat 3 24 0 5159 206 44 32 chr3 187345140 187346927 -30690231 - L1MB7 LINE L1 -672 6010 4246 2385 84 3 0 chr3 187346927 187347223 -30689935 - AluSc SINE Alu -12 297 1 5159 206 44 32 chr3 187347223 187347297 -30689861 - L1MB7 LINE L1 -2436 4246 4174 2819 160 73 49 chr3 187347297 187347589 -30689569 - MER7C DNA MER2_type -2427 601 317 2444 65 0 16 chr3 187347589 187347898 -30689260 + AluY SINE Alu 1 304 -7 2819 160 73 49 chr3 187347898 187348192 -30688966 - MER7C DNA MER2_type -2711 317 1 5159 206 44 32 chr3 187348192 187348402 -30688756 - L1MB7 LINE L1 -2508 4174 3908 1587 229 89 0 chr3 187348414 187348842 -30688316 + MLT2B1 LTR ERVL 9 474 -46 567 125 61 9 chr3 187348847 187349431 -30687727 + (TA)n Simple_repeat Simple_repeat 1 614 0 364 117 0 0 chr3 187349436 187349496 -30687662 - MLT2B1 LTR ERVL -50 470 411 261 0 0 0 chr3 187349511 187349540 -30687618 + (TC)n Simple_repeat Simple_repeat 2 30 0 368 105 0 0 chr3 187349541 187349598 -30687560 + MLT2B1 LTR ERVL 464 520 0 1951 228 37 11 chr3 187349603 187350230 -30686928 - L1MB7 LINE L1 -2734 3910 3268 * 3272 213 19 57 chr3 187350226 187351093 -30686065 - L1MB7 LINE L1 -5701 841 8 197 289 0 0 chr3 187351645 187351683 -30685475 + MIR SINE MIR 30 67 -141 2260 117 0 7 chr3 187351863 187352172 -30684986 + AluSq SINE Alu 1 307 -6 24 53 0 0 chr3 187352264 187352302 -30684856 + AT_rich Low_complexity Low_complexity 1 38 0 221 237 34 17 chr3 187355087 187355146 -30682012 + L2 LINE L2 3209 3268 -4 2553 62 0 0 chr3 187355293 187355600 -30681558 + AluY SINE Alu 1 307 -4 192 158 0 0 chr3 187356353 187356391 -30680767 + A-rich Low_complexity Low_complexity 1 38 0 32 75 0 0 chr3 187357026 187357093 -30680065 + AT_rich Low_complexity Low_complexity 1 67 0 2945 168 39 10 chr3 187357095 187357142 -30680016 - L1MB4 LINE L1 -2 6178 6134 2380 65 17 0 chr3 187357142 187357435 -30679723 - AluSp SINE Alu -15 298 1 2945 168 39 10 chr3 187357435 187357971 -30679187 - L1MB4 LINE L1 -46 6134 5578 408 255 52 56 chr3 187358141 187358248 -30678910 - L1MC4a LINE L1 -1868 5940 5834 2381 71 0 0 chr3 187358248 187358544 -30678614 - AluY SINE Alu -15 296 1 408 255 52 56 chr3 187358544 187358667 -30678491 - L1MC4a LINE L1 -1974 5834 5711 400 150 88 35 chr3 187359480 187359593 -30677565 + L1ME LINE L1 5704 5822 -299 1299 36 0 24 chr3 187360438 187360605 -30676553 + AluY SINE Alu 132 294 -17 234 0 0 0 chr3 187361014 187361040 -30676118 + (TG)n Simple_repeat Simple_repeat 2 27 0 234 240 40 0 chr3 187361158 187361208 -30675950 + MIR3 SINE MIR 108 159 -49 2473 63 0 0 chr3 187361822 187362122 -30675036 + AluY SINE Alu 1 300 -11 1771 164 3 45 chr3 187362294 187362605 -30674553 - AluJb SINE Alu -14 298 1 638 319 20 5 chr3 187362703 187362907 -30674251 + MIR SINE MIR 5 211 -51 306 285 119 63 chr3 187363470 187363649 -30673509 - MIR SINE MIR -52 210 30 2033 103 7 7 chr3 187363742 187364014 -30673144 + AluSx SINE Alu 34 305 -7 1385 197 86 10 chr3 187365038 187365328 -30671830 - AluJo SINE Alu 0 312 1 1992 145 0 0 chr3 187365847 187366161 -30670997 - AluSx SINE Alu 0 314 1 299 326 35 28 chr3 187366252 187366396 -30670762 - MER5B DNA MER1_type -33 145 1 396 246 0 40 chr3 187366554 187366680 -30670478 + LTR16A LTR ERVL 129 249 -201 248 309 47 8 chr3 187366723 187366856 -30670302 + MIR SINE MIR 19 154 -63 195 129 0 0 chr3 187366856 187366887 -30670271 + (CAA)n Simple_repeat Simple_repeat 3 33 0 4424 169 33 28 chr3 187367209 187368518 -30668640 + L1MB8 LINE L1 4867 6178 0 2390 89 0 10 chr3 187370298 187370612 -30666546 - AluSq SINE Alu -2 311 1 452 199 86 13 chr3 187370682 187370833 -30666325 - L1MD3 LINE L1 -104 7891 7730 350 236 21 64 chr3 187372222 187372362 -30664796 - MER94 DNA DNA 0 134 1 277 418 8 0 chr3 187372537 187372671 -30664487 - MIR3 SINE MIR -69 139 5 644 274 119 0 chr3 187373012 187373231 -30663927 + MIR SINE MIR 16 260 -2 2309 100 0 3 chr3 187374163 187374462 -30662696 - AluSx SINE Alu -14 298 1 201 357 45 9 chr3 187374536 187374648 -30662510 + MIR SINE MIR 120 235 -27 237 267 78 26 chr3 187374878 187374994 -30662164 + MER117 DNA MER1_type 26 147 -50 2240 103 0 0 chr3 187375121 187375421 -30661737 + AluSq SINE Alu 1 300 -13 2512 102 17 11 chr3 187375878 187376240 -30660918 - THE1B LTR MaLR 0 364 1 24 0 0 0 chr3 187376499 187376523 -30660635 + AT_rich Low_complexity Low_complexity 1 24 0 467 270 82 43 chr3 187377391 187377473 -30659685 + MIR SINE MIR 1 78 -184 1952 145 14 0 chr3 187377473 187377755 -30659403 - AluSx SINE Alu -26 286 1 467 270 82 43 chr3 187377755 187377905 -30659253 + MIR SINE MIR 78 242 -20 346 202 10 20 chr3 187378244 187378343 -30658815 + CT-rich Low_complexity Low_complexity 3 100 0 2195 110 7 0 chr3 187379105 187379404 -30657754 - AluSx SINE Alu -11 301 1 693 271 84 10 chr3 187379470 187379673 -30657485 - MIR SINE MIR -42 220 3 1528 117 26 49 chr3 187379741 187380049 -30657109 + L1MA4A LINE L1 5912 6212 -91 269 274 42 0 chr3 187380049 187380144 -30657014 - MER69A DNA AcHobo -48 129 31 184 254 36 0 chr3 187380754 187380809 -30656349 - MIR SINE MIR -67 141 85 372 229 29 9 chr3 187381374 187381479 -30655679 - MER103 DNA DNA -9 157 51 1926 131 27 10 chr3 187382191 187382488 -30654670 - AluJo SINE Alu -6 306 5 2104 99 39 0 chr3 187382996 187383278 -30653880 - AluSx SINE Alu -19 293 1 342 314 39 58 chr3 187383594 187383750 -30653408 + MIR3 SINE MIR 9 161 -47 2347 106 0 3 chr3 187384405 187384717 -30652441 + AluSq SINE Alu 3 313 0 323 339 70 21 chr3 187384944 187385130 -30652028 - L1MC4a LINE L1 -1927 5881 5687 2174 121 3 0 chr3 187385551 187385849 -30651309 - AluSx SINE Alu -13 299 1 211 248 89 59 chr3 187386036 187386137 -30651021 - L3 LINE CR1 -24 1553 1450 23 0 0 0 chr3 187386829 187386852 -30650306 + AT_rich Low_complexity Low_complexity 1 23 0 360 348 59 7 chr3 187387934 187388069 -30649089 + MIR3 SINE MIR 59 200 -8 220 352 73 40 chr3 187388396 187388643 -30648515 + L2 LINE L2 2723 2977 -337 2162 55 82 31 chr3 187389950 187390241 -30646917 - AluSg SINE Alu -4 306 1 1005 201 82 60 chr3 187390788 187391106 -30646052 + MER46C DNA MER2_type 13 337 -1 277 200 0 15 chr3 187391297 187391362 -30645796 - MER46C DNA MER2_type -274 64 1 1043 69 0 0 chr3 187391677 187391906 -30645252 + L1PA7 LINE L1 6013 6241 0 24 32 0 0 chr3 187392617 187392648 -30644510 + AT_rich Low_complexity Low_complexity 1 31 0 1022 274 235 18 chr3 187392793 187393573 -30643585 + L2 LINE L2 2372 3313 0 204 67 0 0 chr3 187393705 187393735 -30643423 + (TC)n Simple_repeat Simple_repeat 1 30 0 1666 192 31 3 chr3 187394672 187394964 -30642194 - AluJb SINE Alu -12 300 1 1533 96 55 0 chr3 187395097 187395315 -30641843 - MER30 DNA MER1_type 0 230 1 310 236 14 0 chr3 187395565 187395637 -30641521 + MIR SINE MIR 91 163 -99 2068 128 0 16 chr3 187395914 187396220 -30640938 + AluSx SINE Alu 1 301 -11 254 283 120 91 chr3 187396337 187396653 -30640505 + L2 LINE L2 2913 3308 -5 21 0 0 0 chr3 187397667 187397688 -30639470 + AT_rich Low_complexity Low_complexity 1 21 0 312 91 0 0 chr3 187399545 187399589 -30637569 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 1656 186 21 3 chr3 187399589 187399879 -30637279 - AluJo SINE Alu -17 295 1 480 107 0 36 chr3 187399901 187399985 -30637173 - L1MB3 LINE L1 -1 6182 6102 4391 201 68 12 chr3 187399987 187401712 -30635446 - L1M4 LINE L1 -2511 3871 2040 22 0 0 0 chr3 187401741 187401763 -30635395 + AT_rich Low_complexity Low_complexity 1 22 0 2246 108 14 0 chr3 187402602 187402898 -30634260 - AluSx SINE Alu -12 300 1 613 140 0 0 chr3 187403288 187403388 -30633770 + U13 snRNA snRNA 1 100 -4 1716 50 0 5 chr3 187407315 187407517 -30629641 - AluY SINE Alu -6 305 105 242 339 37 9 chr3 187407932 187408041 -30629117 + L2 LINE L2 3197 3308 -5 2241 91 0 56 chr3 187408752 187409071 -30628087 + AluSq SINE Alu 1 301 -12 21 0 0 0 chr3 187409530 187409551 -30627607 + AT_rich Low_complexity Low_complexity 1 21 0 637 203 46 7 chr3 187410013 187410166 -30626992 + MIR SINE MIR 80 238 -24 221 255 0 20 chr3 187410365 187410416 -30626742 + GA-rich Low_complexity Low_complexity 2 51 0 4315 142 89 103 chr3 187410592 187412131 -30625027 - pTR5 LTR ERV1 0 2438 743 184 224 61 20 chr3 187412521 187412570 -30624588 + MIR SINE MIR 162 212 -50 308 258 62 10 chr3 187413633 187413730 -30623428 + MIR SINE MIR 132 233 -29 236 354 48 27 chr3 187414108 187414255 -30622903 - L2 LINE L2 0 3272 3123 239 200 167 0 chr3 187414612 187414672 -30622486 - MIR3 SINE MIR -31 177 108 197 354 96 15 chr3 187414759 187415019 -30622139 + L2 LINE L2 2462 2742 -572 1026 158 27 0 chr3 187415381 187415565 -30621593 + MER5A DNA MER1_type 1 189 0 180 288 34 17 chr3 187416644 187416703 -30620455 - MIR SINE MIR -115 147 88 2100 116 7 3 chr3 187417368 187417661 -30619497 - AluSx SINE Alu -18 294 1 22 88 0 0 chr3 187417903 187417960 -30619198 + AT_rich Low_complexity Low_complexity 1 57 0 2021 124 3 16 chr3 187418222 187418529 -30618629 + AluSc SINE Alu 1 303 -6 24 53 0 0 chr3 187418621 187418659 -30618499 + AT_rich Low_complexity Low_complexity 1 38 0 2001 151 0 22 chr3 187420561 187420873 -30616285 + AluJb SINE Alu 1 305 -7 3975 151 5 27 chr3 187421918 187422684 -30614474 - L1P LINE L1 -1572 4574 3826 992 189 5 9 chr3 187422704 187422926 -30614232 + L1P LINE L1 3260 3480 -2666 1223 168 33 42 chr3 187423152 187423485 -30613673 + Charlie4a DNA MER1_type 179 508 0 2197 115 0 3 chr3 187423501 187423805 -30613353 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr3 187423805 187423828 -30613330 + AT_rich Low_complexity Low_complexity 1 23 0 194 150 25 0 chr3 187424700 187424740 -30612418 + T-rich Low_complexity Low_complexity 2 42 0 265 313 77 39 chr3 187425582 187425764 -30611394 + L2 LINE L2 2862 3050 -222 191 241 103 0 chr3 187426188 187426246 -30610912 - MIR SINE MIR -62 146 83 * 345 289 99 8 chr3 187426239 187426360 -30610798 - L2 LINE L2 -2 3311 3180 207 269 39 0 chr3 187426770 187426822 -30610336 - MIR SINE MIR -6 256 203 1180 164 43 30 chr3 187426921 187427037 -30610121 + MER33 DNA MER1_type 1 103 -2482 2154 112 3 0 chr3 187427037 187427332 -30609826 + AluSg SINE Alu 1 296 -14 1180 164 43 30 chr3 187427332 187427521 -30609637 + MER33 DNA MER1_type 103 299 -25 189 262 71 0 chr3 187427848 187427890 -30609268 - L2 LINE L2 -37 3235 3191 1808 171 3 20 chr3 187428823 187429128 -30608030 + AluJb SINE Alu 1 300 -12 21 0 0 0 chr3 187429161 187429182 -30607976 + AT_rich Low_complexity Low_complexity 1 21 0 411 299 71 0 chr3 187429992 187430119 -30607039 - L2 LINE L2 0 3313 3178 268 221 25 55 chr3 187430569 187430732 -30606426 + T-rich Low_complexity Low_complexity 4 161 0 * 339 205 22 60 chr3 187430629 187430868 -30606290 + (TTTG)n Simple_repeat Simple_repeat 1 229 0 1298 96 0 56 chr3 187430987 187431185 -30605973 + AluSg/x SINE Alu 122 308 -4 865 246 130 58 chr3 187431186 187431548 -30605610 - L2 LINE L2 -661 2653 2266 189 276 19 86 chr3 187431611 187431716 -30605442 - L2 LINE L2 -963 2351 2254 183 261 100 89 chr3 187431727 187431907 -30605251 - L2 LINE L2 -905 2409 2228 327 284 59 96 chr3 187432066 187432369 -30604789 - L2 LINE L2 -950 2364 2073 242 336 55 0 chr3 187432528 187432638 -30604520 - L2 LINE L2 -3 3269 3154 877 101 16 23 chr3 187433421 187433550 -30603608 + AluSq/x SINE Alu 1 128 -184 432 229 157 14 chr3 187434897 187435037 -30602121 + MIR SINE MIR 69 228 -34 792 194 7 7 chr3 187435080 187435224 -30601934 + FRAM SINE Alu 12 155 -21 1921 124 11 3 chr3 187435971 187436253 -30600905 - AluSx SINE Alu -13 299 16 261 310 69 69 chr3 187436479 187436653 -30600505 - MIR3 SINE MIR -14 194 21 860 215 27 89 chr3 187436981 187437208 -30599950 - L1MB7 LINE L1 -9 6175 5968 1398 22 0 17 chr3 187437208 187437389 -30599769 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 860 215 27 89 chr3 187437389 187437454 -30599704 - L1MB7 LINE L1 -216 5968 5901 218 294 87 8 chr3 187437729 187437855 -30599303 + MIR SINE MIR 73 208 -54 591 129 52 9 chr3 187438996 187439112 -30598046 + AluSq/x SINE Alu 4 124 -189 309 234 103 41 chr3 187439241 187439386 -30597772 + L1MCa LINE L1 2225 2378 -4048 23 54 0 0 chr3 187439477 187439514 -30597644 + AT_rich Low_complexity Low_complexity 1 37 0 368 255 183 46 chr3 187440798 187440847 -30596311 - L1 LINE L1 -2801 3345 3304 1655 83 0 28 chr3 187440847 187441100 -30596058 - L1PA6 LINE L1 -7 6147 5902 368 255 183 46 chr3 187441100 187441378 -30595780 - L1 LINE L1 -2842 3304 3030 2281 153 13 13 chr3 187441518 187441911 -30595247 + L1PA16 LINE L1 5774 6166 0 2509 65 3 0 chr3 187441917 187442225 -30594933 + AluY SINE Alu 1 309 -2 414 248 62 0 chr3 187442225 187442338 -30594820 + Charlie7 DNA MER1_type 1031 1150 -1462 1166 271 39 10 chr3 187442374 187442762 -30594396 + MER20B DNA MER1_type 2 400 -383 262 202 179 24 chr3 187442948 187443032 -30594126 + MER5A DNA MER1_type 10 106 -83 1460 110 34 21 chr3 187444902 187445138 -30592020 - AluSc SINE Alu -8 301 63 187 385 0 0 chr3 187445377 187445429 -30591729 + L2 LINE L2 3122 3173 -99 209 234 64 0 chr3 187445874 187445921 -30591237 - MIR3 SINE MIR -46 162 113 285 228 35 0 chr3 187446428 187446485 -30590673 - L2 LINE L2 -5 3308 3250 27 62 0 0 chr3 187446632 187446680 -30590478 + AT_rich Low_complexity Low_complexity 1 48 0 409 306 15 15 chr3 187446755 187446961 -30590197 - AluSx SINE Alu -106 206 1 1749 192 25 8 chr3 187447101 187447455 -30589703 - MLT1A1 LTR MaLR 0 365 6 414 110 24 37 chr3 187447871 187447953 -30589205 - AluSc SINE Alu -5 304 224 748 224 7 7 chr3 187448867 187449019 -30588139 + FRAM SINE Alu 1 150 -26 559 316 83 5 chr3 187449114 187449332 -30587826 + MIR SINE MIR 28 262 0 461 204 0 147 chr3 187449758 187449915 -30587243 + MIR SINE MIR 14 147 -115 286 143 0 29 chr3 187451179 187451249 -30585909 + (TC)n Simple_repeat Simple_repeat 1 68 0 287 295 41 16 chr3 187451379 187451501 -30585657 + MLT1L LTR MaLR 491 615 0 509 226 68 8 chr3 187452620 187452753 -30584405 - MER104 DNA Tc2 -4 176 36 3409 239 68 37 chr3 187452772 187453056 -30584102 + L1ME LINE L1 2991 3265 -2881 1859 159 3 11 chr3 187453056 187453339 -30583819 + AluJo SINE Alu 14 294 -18 3409 239 68 37 chr3 187453339 187454525 -30582633 + L1ME LINE L1 3265 4507 -1639 702 225 32 141 chr3 187455071 187455610 -30581548 + L1MDb LINE L1 774 1245 -5164 1771 134 22 89 chr3 187455610 187455968 -30581190 - MER1B DNA MER1_type 0 337 4 702 225 32 141 chr3 187455968 187456015 -30581143 + L1MDb LINE L1 1245 1296 -5113 1029 175 89 45 chr3 187456018 187456332 -30580826 + L1MDb LINE L1 1387 1714 -4692 735 246 119 18 chr3 187456334 187456619 -30580539 + L1ME LINE L1 5261 5574 -592 797 212 122 11 chr3 187456676 187456865 -30580293 + MER58C DNA MER1_type 2 211 -4 311 241 40 109 chr3 187456877 187456963 -30580195 + MER112 DNA MER1_type 1 91 -169 432 0 0 0 chr3 187456963 187457011 -30580147 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 311 241 40 109 chr3 187457011 187457198 -30579960 + MER112 DNA MER1_type 91 255 -5 2908 87 39 0 chr3 187457746 187458160 -30578998 + L1PA13 LINE L1 5730 6159 -4 790 171 91 71 chr3 187458468 187458678 -30578480 + MER20 DNA MER1_type 1 214 -5 2452 25 7 3 chr3 187460903 187461186 -30575972 - AluY SINE Alu -10 301 18 1776 133 46 12 chr3 187461186 187461509 -30575649 - MER1B DNA MER1_type -5 334 1 2316 65 20 0 chr3 187461712 187462006 -30575152 - AluSp SINE Alu -8 305 6 2395 90 3 0 chr3 187462010 187462311 -30574847 - AluSg SINE Alu -8 302 1 216 0 0 0 chr3 187462660 187462684 -30574474 + (A)n Simple_repeat Simple_repeat 1 24 0 189 74 0 0 chr3 187463836 187463863 -30573295 + (CA)n Simple_repeat Simple_repeat 2 28 0 1842 132 0 52 chr3 187464097 187464407 -30572751 + AluSx SINE Alu 1 294 -18 2190 130 10 39 chr3 187466099 187466515 -30570643 - L1 LINE L1 -1217 4929 4526 5333 125 42 4 chr3 187466678 187468360 -30568798 - L1PA15 LINE L1 -1 6164 4418 1358 199 8 31 chr3 187469726 187469987 -30567171 - AluJo SINE Alu -55 257 3 544 250 111 11 chr3 187470800 187470980 -30566178 - MIR SINE MIR -59 203 6 255 333 92 39 chr3 187473509 187473791 -30563367 + L3 LINE CR1 1129 1425 -152 186 316 18 18 chr3 187475765 187475822 -30561336 + MIR3 SINE MIR 14 70 -138 377 317 17 0 chr3 187475995 187476115 -30561043 - MIR SINE MIR -75 187 66 372 250 193 0 chr3 187476307 187476459 -30560699 + MER5A DNA MER1_type 4 189 0 1127 187 0 62 chr3 187478041 187478314 -30558844 + L1P LINE L1 3491 3746 -2400 388 296 31 62 chr3 187478389 187478615 -30558543 + MIR SINE MIR 9 227 -35 1889 127 0 31 chr3 187479595 187479911 -30557247 + AluSg SINE Alu 1 307 0 2352 103 0 0 chr3 187479911 187480221 -30556937 + AluSg SINE Alu 1 310 0 2295 108 16 0 chr3 187480955 187481262 -30555896 - AluSx SINE Alu 0 312 1 688 192 14 7 chr3 187481322 187481468 -30555690 + MLT1A1 LTR MaLR 11 157 -208 2335 88 7 0 chr3 187481469 187481776 -30555382 + AluY SINE Alu 1 309 -2 414 248 62 0 chr3 187481776 187481889 -30555269 + Charlie7 DNA MER1_type 1031 1150 -1462 1166 271 39 10 chr3 187481925 187482313 -30554845 + MER20B DNA MER1_type 2 400 -383 267 170 0 0 chr3 187482354 187482401 -30554757 + MER46C DNA MER2_type 80 126 -212 365 264 271 7 chr3 187482499 187482639 -30554519 + MER5A DNA MER1_type 10 186 -3 2121 119 7 0 chr3 187482679 187482965 -30554193 - AluSx SINE Alu -22 290 3 528 226 161 4 chr3 187483001 187483231 -30553927 + MER20B DNA MER1_type 518 783 0 * 1987 240 55 47 chr3 187483231 187483507 -30553651 + Charlie7 DNA MER1_type 1182 1454 -1158 2860 184 10 8 chr3 187483507 187484024 -30553134 + MLT2B1 LTR ERVL 3 520 0 1987 240 55 47 chr3 187484024 187484611 -30552547 + Charlie7 DNA MER1_type 1454 2052 -560 1196 219 70 9 chr3 187484702 187485017 -30552141 + MER46C DNA MER2_type 1 334 -4 2121 165 0 0 chr3 187485717 187486099 -30551059 + L1 LINE L1 4628 5009 -1137 243 0 0 0 chr3 187486240 187486267 -30550891 + (TTTTA)n Simple_repeat Simple_repeat 3 29 0 443 229 0 0 chr3 187486268 187486373 -30550785 + L1 LINE L1 4991 5095 -1051 1926 129 4 4 chr3 187486512 187486784 -30550374 - AluSx SINE Alu -27 285 14 1027 142 31 12 chr3 187486981 187487143 -30550015 + AluJo SINE Alu 121 285 -27 423 217 0 0 chr3 187487143 187487249 -30549909 + (TA)n Simple_repeat Simple_repeat 1 106 0 1985 112 46 23 chr3 187487276 187487581 -30549577 - AluSx SINE Alu 0 312 1 443 229 0 0 chr3 187488189 187488294 -30548864 - L1 LINE L1 -1051 5095 4991 243 0 0 0 chr3 187488295 187488322 -30548836 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 2121 165 0 0 chr3 187488463 187488845 -30548313 - L1 LINE L1 -1137 5009 4628 1196 219 70 9 chr3 187489545 187489860 -30547298 - MER46C DNA MER2_type -4 334 1 1987 240 55 47 chr3 187489951 187490538 -30546620 - Charlie7 DNA MER1_type -560 2052 1454 2860 184 10 8 chr3 187490538 187491055 -30546103 - MLT2B1 LTR ERVL 0 520 3 1987 240 55 47 chr3 187491055 187491331 -30545827 - Charlie7 DNA MER1_type -1158 1454 1182 528 226 161 4 chr3 187491331 187491561 -30545597 - MER20B DNA MER1_type 0 783 518 2054 123 11 0 chr3 187491597 187491882 -30545276 + AluSx SINE Alu 3 290 -22 365 264 271 7 chr3 187491922 187492062 -30545096 - MER5A DNA MER1_type -3 186 10 267 170 0 0 chr3 187492160 187492207 -30544951 - MER46C DNA MER2_type -212 126 80 1166 271 39 10 chr3 187492248 187492636 -30544522 - MER20B DNA MER1_type -383 400 2 529 246 95 47 chr3 187492672 187492785 -30544373 - Charlie7 DNA MER1_type -1462 1150 1044 2696 39 0 0 chr3 187492785 187493094 -30544064 - AluY SINE Alu -2 309 1 529 246 95 47 chr3 187493094 187493212 -30543946 - Charlie7 DNA MER1_type -1568 1044 908 25 75 0 0 chr3 187493243 187493296 -30543862 + AT_rich Low_complexity Low_complexity 1 53 0 195 360 45 27 chr3 187494746 187494857 -30542301 + L3 LINE CR1 52 164 -1413 353 331 41 8 chr3 187494928 187495049 -30542109 - L2 LINE L2 -5 3308 3184 579 345 36 39 chr3 187495708 187496067 -30541091 - L2 LINE L2 -2520 794 437 2229 184 24 77 chr3 187497298 187497881 -30539277 - MLT2B3 LTR ERVL -1 553 2 316 302 54 22 chr3 187499039 187499359 -30537799 + L1ME4a LINE L1 5571 5898 -223 2245 95 7 3 chr3 187499772 187500078 -30537080 + AluY SINE Alu 1 307 -4 349 220 135 14 chr3 187501240 187501381 -30535777 + L1ME4a LINE L1 5960 6117 -4 216 368 38 0 chr3 187501407 187501513 -30535645 + L3 LINE CR1 298 407 -1170 1023 295 147 17 chr3 187501544 187502015 -30535143 + L3 LINE CR1 516 1047 -530 432 130 0 0 chr3 187502660 187502729 -30534429 + (TTCC)n Simple_repeat Simple_repeat 2 70 0 2252 139 11 5 chr3 187503551 187503932 -30533226 + L1MA5A LINE L1 5905 6287 -10 22 0 0 0 chr3 187504007 187504029 -30533129 + AT_rich Low_complexity Low_complexity 1 22 0 2235 88 9 35 chr3 187504030 187504347 -30532811 + AluSc SINE Alu 1 309 0 21 36 0 0 chr3 187504407 187504435 -30532723 + AT_rich Low_complexity Low_complexity 1 28 0 2273 112 0 3 chr3 187505606 187505910 -30531248 + AluSx SINE Alu 1 303 -9 216 279 59 0 chr3 187507418 187507486 -30529672 + MIR3 SINE MIR 130 201 -7 707 187 8 0 chr3 187508539 187508662 -30528496 + FLAM_C SINE Alu 7 130 -13 227 56 56 0 chr3 187508714 187508750 -30528408 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 644 246 180 35 chr3 187508752 187509036 -30528122 - L2 LINE L2 -1 3312 2988 2399 107 0 0 chr3 187509138 187509448 -30527710 + AluSg SINE Alu 1 310 0 398 287 41 25 chr3 187510098 187510220 -30526938 - MIR3 SINE MIR -9 199 76 418 299 58 7 chr3 187510685 187510822 -30526336 + MIR SINE MIR 17 160 -102 201 290 19 37 chr3 187511277 187511384 -30525774 + CT-rich Low_complexity Low_complexity 5 109 0 1653 144 18 42 chr3 187512300 187512584 -30524574 + AluJo SINE Alu 13 289 -23 266 227 18 27 chr3 187512672 187512782 -30524376 - L1MC4 LINE L1 -227 7815 7707 926 222 78 18 chr3 187512796 187513194 -30523964 - L1MC4 LINE L1 -305 7584 7044 293 253 59 129 chr3 187514526 187514696 -30522462 - L2 LINE L2 -8 3264 3107 591 286 22 49 chr3 187515051 187515275 -30521883 - MIR SINE MIR -32 230 13 2268 104 0 0 chr3 187517351 187517648 -30519510 + AluSg SINE Alu 1 297 -13 229 301 12 0 chr3 187518099 187518182 -30518976 + MER112 DNA MER1_type 2 85 -175 334 186 98 20 chr3 187518246 187518348 -30518810 + MER112 DNA MER1_type 80 189 -71 182 288 150 25 chr3 187518494 187518574 -30518584 - MIR3 SINE MIR -49 159 70 204 387 36 0 chr3 187518613 187518750 -30518408 + MIR3 SINE MIR 21 162 -46 1462 247 29 77 chr3 187518984 187519503 -30517655 + L2 LINE L2 2820 3313 0 2051 158 47 37 chr3 187520427 187520907 -30516251 - MER31A LTR ERV1 0 661 1 224 315 65 74 chr3 187520917 187521133 -30516025 + L2 LINE L2 2305 2518 -796 * 667 211 157 0 chr3 187521088 187521235 -30515923 - MER5A DNA MER1_type -6 183 14 275 242 32 32 chr3 187521410 187521505 -30515653 - MER112 DNA MER1_type -16 244 150 417 188 0 0 chr3 187521506 187521591 -30515567 + (AATAG)n Simple_repeat Simple_repeat 5 89 0 495 212 171 41 chr3 187522341 187522511 -30514647 + MIR SINE MIR 71 262 0 217 329 25 25 chr3 187522506 187522585 -30514573 + L2 LINE L2 3194 3272 0 * 204 158 0 0 chr3 187523752 187523790 -30513368 + (TG)n Simple_repeat Simple_repeat 2 39 0 2319 108 0 0 chr3 187525131 187525426 -30511732 - AluSx SINE Alu -17 295 1 611 255 153 0 chr3 187525753 187525910 -30511248 - MER5A DNA MER1_type 0 189 9 1127 129 28 0 chr3 187526083 187526261 -30510897 + L1PA11 LINE L1 5992 6174 0 311 250 31 70 chr3 187526822 187526950 -30510208 + L2 LINE L2 3191 3313 0 3601 152 58 4 chr3 187527040 187527765 -30509393 + L1MA9 LINE L1 4075 4838 -1308 2613 113 63 18 chr3 187527766 187528255 -30508903 + MER4B-int LTR ERV1 2109 2619 -4139 1000 137 0 27 chr3 187528256 187528402 -30508756 + AluSq/x SINE Alu 1 142 -170 290 244 23 47 chr3 187528409 187528495 -30508663 - L2 LINE L2 0 3272 3189 600 133 29 0 chr3 187528498 187528603 -30508555 - MER4B-int LTR ERV1 -4022 2736 2629 * 1711 144 52 32 chr3 187528583 187528952 -30508206 + MER4B-int LTR ERV1 2720 3095 -3663 * 3942 151 25 3 chr3 187528938 187529592 -30507566 + MER4B-int LTR ERV1 3421 4088 -2670 3565 111 20 9 chr3 187529591 187530151 -30507007 + MER4B-int LTR ERV1 4452 5017 -1741 * 2424 169 16 16 chr3 187530151 187530913 -30506245 + L1MA9 LINE L1 4824 5587 -725 * 5602 67 12 8 chr3 187530912 187531734 -30505424 + L1PA6 LINE L1 4559 5383 -763 3929 65 0 0 chr3 187531743 187532236 -30504922 + L1PA6 LINE L1 5662 6154 0 3689 165 25 7 chr3 187532236 187532958 -30504200 + L1MA9 LINE L1 5571 6309 -3 1756 190 0 16 chr3 187533144 187533454 -30503704 - AluJb SINE Alu -7 305 1 25 0 0 0 chr3 187533624 187533649 -30503509 + AT_rich Low_complexity Low_complexity 1 25 0 399 316 32 19 chr3 187534770 187534928 -30502230 + MER5A DNA MER1_type 27 186 -3 279 243 236 29 chr3 187536955 187537095 -30500063 - MIR SINE MIR -12 250 82 2299 96 0 0 chr3 187537590 187537881 -30499277 - AluSx SINE Alu -21 291 1 2045 103 39 4 chr3 187538796 187539077 -30498081 - AluSc SINE Alu -18 291 1 241 375 62 0 chr3 187539309 187539405 -30497753 - L2 LINE L2 -16 3256 3155 2355 78 0 7 chr3 187539511 187539819 -30497339 - AluY SINE Alu -5 306 1 2258 94 13 38 chr3 187540538 187540856 -30496302 - AluSg SINE Alu 0 310 1 224 165 33 187 chr3 187541028 187541119 -30496039 + MER91C DNA MER1_type 31 107 -33 239 258 81 0 chr3 187541168 187541230 -30495928 + MIR3 SINE MIR 93 159 -49 29 28 0 0 chr3 187541353 187541389 -30495769 + AT_rich Low_complexity Low_complexity 1 36 0 1985 112 46 23 chr3 187541770 187542075 -30495083 + AluSx SINE Alu 1 312 0 363 234 0 9 chr3 187542102 187542209 -30494949 + (TA)n Simple_repeat Simple_repeat 1 106 0 1027 142 31 12 chr3 187542209 187542371 -30494787 - AluJo SINE Alu -27 285 121 1926 141 3 0 chr3 187542569 187542853 -30494305 + AluSx SINE Alu 14 298 -14 2306 88 0 3 chr3 187542980 187543277 -30493881 - AluSg SINE Alu -14 296 1 282 268 45 103 chr3 187543630 187543692 -30493466 - L2 LINE L2 -9 3304 3240 1440 232 36 12 chr3 187543692 187544024 -30493134 + MER58B DNA MER1_type 1 340 -1 282 268 45 103 chr3 187544024 187544204 -30492954 - L2 LINE L2 -73 3240 3076 480 307 60 33 chr3 187544474 187544689 -30492469 + MIR SINE MIR 32 252 -10 22 0 0 0 chr3 187545279 187545301 -30491857 + AT_rich Low_complexity Low_complexity 1 22 0 22 111 0 0 chr3 187545317 187545416 -30491742 + AT_rich Low_complexity Low_complexity 1 99 0 238 262 33 0 chr3 187545659 187545720 -30491438 - L3 LINE CR1 -6 1571 1509 202 279 38 38 chr3 187545755 187545834 -30491324 - L3 LINE CR1 -151 1426 1348 528 184 250 20 chr3 187545885 187546037 -30491121 + MER5A DNA MER1_type 1 187 -2 207 278 170 52 chr3 187546063 187546257 -30490901 + MIR SINE MIR 28 244 -18 372 279 0 0 chr3 187546393 187546472 -30490686 - MIR3 SINE MIR -53 155 77 315 247 326 0 chr3 187548478 187548567 -30488591 + MER91A DNA MER1_type 51 168 -28 249 329 174 13 chr3 187548756 187548911 -30488247 - MER91A DNA MER1_type -3 193 14 26 0 0 0 chr3 187550565 187550591 -30486567 + AT_rich Low_complexity Low_complexity 1 26 0 2383 113 0 0 chr3 187550707 187551017 -30486141 + AluSq SINE Alu 2 311 -2 242 345 0 0 chr3 187551161 187551216 -30485942 + MIR SINE MIR 96 150 -58 189 185 19 93 chr3 187552223 187552277 -30484881 - L2 LINE L2 0 3313 3264 262 236 0 69 chr3 187552314 187552386 -30484772 + MIR SINE MIR 30 96 -112 273 255 43 53 chr3 187552872 187552966 -30484192 + MIR3 SINE MIR 115 207 -1 1120 163 169 36 chr3 187553661 187553962 -30483196 + MER2 DNA MER2_type 1 341 -3 723 305 68 56 chr3 187553975 187554503 -30482655 - L2 LINE L2 0 3272 2741 185 315 17 65 chr3 187554652 187554893 -30482265 + L2 LINE L2 2979 3233 -80 183 80 0 0 chr3 187554947 187554972 -30482186 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 861 264 122 30 chr3 187555040 187555550 -30481608 + MLT1H1 LTR MaLR 1 590 0 308 315 117 9 chr3 187555591 187555702 -30481456 - MIR3 SINE MIR -71 137 15 445 274 111 37 chr3 187556778 187557048 -30480110 - MLT1K LTR MaLR 0 588 299 373 370 87 38 chr3 187557254 187557661 -30479497 + L2 LINE L2 1708 2145 -1169 2317 113 3 3 chr3 187557661 187557970 -30479188 - AluSp SINE Alu -4 309 1 373 370 87 38 chr3 187557970 187558059 -30479099 + L2 LINE L2 2145 2228 -1086 837 293 47 20 chr3 187558745 187559042 -30478116 + MLT1I LTR MaLR 41 345 -64 1812 190 0 3 chr3 187559061 187559361 -30477797 + AluJb SINE Alu 3 301 -11 23 0 0 0 chr3 187559361 187559384 -30477774 + AT_rich Low_complexity Low_complexity 1 23 0 1318 262 47 15 chr3 187559387 187559788 -30477370 + LTR52 LTR ERVL 6 419 -2 381 268 0 0 chr3 187559830 187559942 -30477216 + L1ME3A LINE L1 6029 6140 -30 1585 143 76 32 chr3 187559951 187560266 -30476892 + MER44D DNA MER2_type 8 606 -3 5626 86 5 0 chr3 187560444 187561256 -30475902 - L1PA14 LINE L1 0 6161 5346 2047 250 71 7 chr3 187561438 187562431 -30474727 - L1ME3A LINE L1 -192 5978 4925 5232 181 39 16 chr3 187562700 187563726 -30473432 - L1M1 LINE L1 -6499 1066 17 249 297 133 18 chr3 187565472 187565639 -30471519 + MIR SINE MIR 64 247 -15 225 262 69 90 chr3 187566170 187566315 -30470843 - L2 LINE L2 -3 3310 3169 315 0 0 0 chr3 187566630 187566665 -30470493 + (CA)n Simple_repeat Simple_repeat 1 35 0 322 220 20 10 chr3 187566781 187566881 -30470277 + CT-rich Low_complexity Low_complexity 3 103 0 211 273 0 0 chr3 187567372 187567416 -30469742 + polypurine Low_complexity Low_complexity 5 48 0 235 167 30 0 chr3 187568329 187568395 -30468763 + CT-rich Low_complexity Low_complexity 2 69 0 357 392 20 7 chr3 187570308 187570461 -30466697 + L2 LINE L2 3118 3272 0 303 365 0 0 chr3 187570460 187570556 -30466602 - MIR SINE MIR -70 138 43 * 340 50 0 0 chr3 187570664 187570704 -30466454 + (T)n Simple_repeat Simple_repeat 1 40 0 557 239 136 17 chr3 187571478 187571654 -30465504 - MIR SINE MIR 0 262 66 233 250 18 0 chr3 187571902 187571958 -30465200 - tRNA-Gln-CAG tRNA tRNA -14 61 5 1893 156 3 23 chr3 187572089 187572397 -30464761 + AluJb SINE Alu 7 308 -4 2101 136 0 0 chr3 187572675 187572984 -30464174 + AluSx SINE Alu 1 309 -3 353 327 128 11 chr3 187574318 187574584 -30462574 - L2 LINE L2 -562 2752 2456 23 68 0 0 chr3 187575478 187575522 -30461636 + AT_rich Low_complexity Low_complexity 1 44 0 3922 124 60 32 chr3 187576028 187576190 -30460968 - L1MA5 LINE L1 -2 6298 6142 2313 109 0 0 chr3 187576190 187576484 -30460674 + AluSq SINE Alu 1 294 -19 3922 124 60 32 chr3 187576484 187576835 -30460323 - L1MA5 LINE L1 -158 6142 5755 2139 125 143 8 chr3 187576835 187577212 -30459946 - MSTA LTR MaLR 0 428 1 3922 124 60 32 chr3 187577212 187577425 -30459733 - L1MA5 LINE L1 -545 5755 5550 248 301 21 43 chr3 187577731 187577824 -30459334 - MIR SINE MIR -67 141 51 2121 86 4 0 chr3 187578524 187578791 -30458367 - AluY SINE Alu -43 268 1 4470 115 88 53 chr3 187579132 187579926 -30457232 - LTR12 LTR ERV1 0 826 5 1829 197 52 42 chr3 187579942 187580540 -30456618 - pTR5 LTR ERV1 -1094 1344 741 1796 120 58 19 chr3 187581354 187581679 -30455479 + MER44D DNA MER2_type 1 608 -1 4426 227 90 36 chr3 187581692 187582651 -30454507 - L1MB7 LINE L1 -24 6160 5254 1803 176 10 10 chr3 187582651 187582958 -30454200 - AluJo SINE Alu -5 307 1 4426 227 90 36 chr3 187582958 187583160 -30453998 - L1MB7 LINE L1 -930 5254 5064 783 228 29 18 chr3 187583160 187583331 -30453827 - FAM SINE Alu -2 173 1 4426 227 90 36 chr3 187583331 187584924 -30452234 - L1MB7 LINE L1 -1120 5064 3253 2121 122 3 0 chr3 187585278 187585573 -30451585 + AluSx SINE Alu 1 296 -16 2038 122 3 26 chr3 187585914 187586081 -30451077 - AluSx SINE Alu -15 297 139 2398 47 40 0 chr3 187586081 187586380 -30450778 - AluY SINE Alu 0 311 1 2038 122 3 26 chr3 187586380 187586516 -30450642 - AluSx SINE Alu -173 139 1 825 252 75 39 chr3 187586702 187586956 -30450202 + LTR16A LTR ERVL 177 439 -11 346 271 66 90 chr3 187587067 187587355 -30449803 + MLT1J LTR MaLR 1 281 -230 302 0 26 0 chr3 187587801 187587839 -30449319 + (TG)n Simple_repeat Simple_repeat 2 40 0 2054 119 60 0 chr3 187589203 187589488 -30447670 + AluSx SINE Alu 1 302 -10 1141 240 19 11 chr3 187589531 187589893 -30447265 + L1ME1 LINE L1 4957 5321 -825 720 297 87 20 chr3 187590001 187590278 -30446880 + L1ME1 LINE L1 5483 5795 -367 1903 107 89 0 chr3 187590278 187590548 -30446610 - AluSx SINE Alu -18 294 1 720 297 87 20 chr3 187590548 187590661 -30446497 + L1ME1 LINE L1 5795 5899 -263 475 318 108 0 chr3 187590728 187590942 -30446216 - LTR16B LTR ERVL -95 369 133 586 260 86 2 chr3 187591108 187591343 -30445815 + L1ME1 LINE L1 5900 6164 -2 1388 239 41 41 chr3 187591579 187591924 -30445234 - MLT1J LTR MaLR -6 505 158 2195 115 0 0 chr3 187591924 187592219 -30444939 - AluSx SINE Alu -4 308 14 1388 239 41 41 chr3 187592219 187592267 -30444891 - MLT1J LTR MaLR -352 159 112 2280 109 0 16 chr3 187592713 187593024 -30444134 + AluSg SINE Alu 1 306 -4 1254 71 6 6 chr3 187593040 187593222 -30443936 + L1MA3 LINE L1 5648 5829 -476 839 193 6 0 chr3 187593233 187593399 -30443759 + L1PB1 LINE L1 1 167 -6696 5050 123 21 6 chr3 187593413 187594284 -30442874 + L1PB1 LINE L1 1392 2275 -4588 525 103 0 0 chr3 187594284 187594362 -30442796 + AluSp/q SINE Alu 230 307 -6 14292 181 13 12 chr3 187594365 187598472 -30438686 + L1PB1 LINE L1 2346 6455 -412 2226 107 0 0 chr3 187598472 187598761 -30438397 + AluSx SINE Alu 10 298 -14 14292 181 13 12 chr3 187598761 187599174 -30437984 + L1PB1 LINE L1 6455 6866 -1 2613 118 73 19 chr3 187599240 187599707 -30437451 + L1MA3 LINE L1 5814 6305 0 356 323 13 26 chr3 187599854 187600086 -30437072 + HAL1b LINE L1 245 473 -875 1753 210 45 47 chr3 187600746 187601212 -30435946 - MER31A LTR ERV1 -4 481 17 1587 155 6 106 chr3 187601517 187601858 -30435300 + AluJo SINE Alu 1 307 -5 1681 159 28 104 chr3 187601884 187602078 -30435080 + MLT1A1 LTR MaLR 1 151 -214 2210 84 3 0 chr3 187602078 187602364 -30434794 - AluSp SINE Alu -22 291 5 1681 159 28 104 chr3 187602364 187602564 -30434594 + MLT1A1 LTR MaLR 151 365 0 209 315 0 0 chr3 187602801 187602855 -30434303 + MER5B DNA MER1_type 1 54 -124 2126 120 10 0 chr3 187602866 187603166 -30433992 + AluSg SINE Alu 1 303 -7 681 226 8 15 chr3 187603182 187603315 -30433843 - MER5B DNA MER1_type -45 133 2 926 206 6 18 chr3 187603424 187603594 -30433564 + FAM SINE Alu 5 172 -3 382 277 48 58 chr3 187603698 187603904 -30433254 + HAL1b LINE L1 614 817 -531 257 274 51 34 chr3 187604214 187604389 -30432769 + L1ME4a LINE L1 5943 6120 -1 2410 94 0 3 chr3 187605958 187606265 -30430893 + AluSp SINE Alu 2 307 -6 286 302 86 9 chr3 187607042 187607158 -30430000 - L2 LINE L2 -4 3268 3144 211 289 150 39 chr3 187607157 187607337 -30429821 + L2 LINE L2 2861 3060 -212 * 1044 168 54 11 chr3 187607410 187607595 -30429563 - MER46A DNA MER2_type 0 236 44 394 226 6 96 chr3 187607700 187607877 -30429281 + L2 LINE L2 3153 3313 0 719 286 64 5 chr3 187609113 187609333 -30427825 - MIR SINE MIR -2 260 28 1880 87 31 12 chr3 187609861 187610115 -30427043 + AluSx SINE Alu 38 296 -16 2193 116 3 3 chr3 187611546 187611857 -30425301 - AluSx SINE Alu -1 311 1 186 128 0 0 chr3 187613441 187613480 -30423678 + (T)n Simple_repeat Simple_repeat 1 39 0 326 206 65 43 chr3 187614526 187614618 -30422540 - MER5A DNA MER1_type -82 107 14 283 232 48 88 chr3 187614994 187615119 -30422039 - L1MC4 LINE L1 -21 8021 7902 22 88 0 0 chr3 187615126 187615183 -30421975 + AT_rich Low_complexity Low_complexity 1 57 0 399 255 11 0 chr3 187616176 187616270 -30420888 - MER5A DNA MER1_type -86 103 9 831 116 0 0 chr3 187616323 187616444 -30420714 - AluSp/q SINE Alu -6 307 187 2045 106 3 34 chr3 187616468 187616793 -30420365 - AluSp SINE Alu 0 316 1 334 214 150 57 chr3 187616801 187616941 -30420217 + MIR SINE MIR 50 202 -60 301 180 0 0 chr3 187617503 187617553 -30419605 - MIR SINE MIR -66 142 93 2117 129 0 3 chr3 187618309 187618611 -30418547 - AluSx SINE Alu -11 301 1 908 118 14 21 chr3 187618702 187618846 -30418312 - L1MA3 LINE L1 0 6305 6163 2176 59 49 53 chr3 187618859 187619163 -30417995 - AluY SINE Alu -8 303 1 8951 174 20 25 chr3 187619163 187619404 -30417754 - L1P LINE L1 -1584 4562 4321 2776 7 0 3 chr3 187619404 187619706 -30417452 - AluYa5 SINE Alu -10 301 1 8951 174 20 25 chr3 187619706 187621279 -30415879 - L1P LINE L1 -1825 4321 2757 195 250 94 62 chr3 187621289 187621417 -30415741 + L2 LINE L2 3174 3305 -8 2252 103 36 0 chr3 187621940 187622242 -30414916 - AluSq SINE Alu 0 313 1 986 227 61 5 chr3 187622631 187622829 -30414329 + MER63A DNA MER1_type 1 209 -1 1792 213 137 30 chr3 187624090 187624195 -30412963 - L1ME2 LINE L1 -13 6151 6059 1957 118 0 64 chr3 187624195 187624509 -30412649 - AluSx SINE Alu -18 294 1 1792 213 137 30 chr3 187624509 187624906 -30412252 - L1ME2 LINE L1 -105 6059 5595 308 246 23 88 chr3 187624919 187625134 -30412024 - L1MC4 LINE L1 -1 8041 7841 1911 167 7 0 chr3 187625144 187625437 -30411721 + AluJb SINE Alu 1 295 -17 1041 226 79 27 chr3 187625447 187625809 -30411349 - L1ME2 LINE L1 -799 5347 4978 951 141 20 45 chr3 187625809 187626008 -30411150 - L1MA9 LINE L1 0 6312 6119 216 0 0 0 chr3 187627032 187627056 -30410102 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 717 180 0 0 chr3 187627056 187627167 -30409991 - FLAM_C SINE Alu -21 122 12 234 0 0 0 chr3 187628388 187628414 -30408744 + (A)n Simple_repeat Simple_repeat 1 26 0 1870 198 59 43 chr3 187630109 187630569 -30406589 - MLT1C LTR MaLR 0 467 1 188 283 22 0 chr3 187630770 187630816 -30406342 - MIR SINE MIR -12 250 204 2177 126 0 10 chr3 187630875 187631184 -30405974 + AluSg SINE Alu 1 306 -4 478 315 35 0 chr3 187631251 187631394 -30405764 - MIR3 SINE MIR -45 163 16 243 333 65 0 chr3 187631617 187631710 -30405448 - L2 LINE L2 -40 3232 3134 2142 123 3 10 chr3 187631732 187632034 -30405124 - AluSq SINE Alu -13 300 1 2311 97 0 3 chr3 187633449 187633757 -30403401 + AluSg SINE Alu 1 307 -3 192 77 0 0 chr3 187633758 187633784 -30403374 + (GGAA)n Simple_repeat Simple_repeat 4 29 0 396 0 0 0 chr3 187634315 187634359 -30402799 + (TG)n Simple_repeat Simple_repeat 2 45 0 192 281 114 61 chr3 187634424 187634538 -30402620 + MIR3 SINE MIR 14 133 -75 2386 106 0 0 chr3 187634841 187635153 -30402005 + AluSx SINE Alu 1 312 0 213 371 234 8 chr3 187635506 187635630 -30401528 - L2 LINE L2 -10 3262 3111 318 285 66 27 chr3 187635898 187636050 -30401108 - MIR SINE MIR -56 152 50 21 0 0 0 chr3 187636086 187636107 -30401051 + AT_rich Low_complexity Low_complexity 1 21 0 2072 131 0 26 chr3 187636211 187636516 -30400642 + AluSx SINE Alu 1 297 -15 2242 104 10 0 chr3 187636922 187637231 -30399927 + AluSp SINE Alu 1 312 -1 228 111 0 0 chr3 187637231 187637267 -30399891 + (TA)n Simple_repeat Simple_repeat 1 36 0 621 261 68 31 chr3 187637283 187637505 -30399653 + MIR SINE MIR 8 237 -25 3515 155 54 19 chr3 187637632 187638317 -30398841 + L1MB7 LINE L1 5455 6163 -21 212 253 154 11 chr3 187638491 187638582 -30398576 + MER5C DNA MER1_type 6 109 -215 215 196 143 0 chr3 187638718 187638774 -30398384 + MER5C DNA MER1_type 261 324 0 2335 48 3 14 chr3 187638807 187639096 -30398062 + AluY SINE Alu 21 306 -5 2349 93 0 0 chr3 187639700 187639991 -30397167 - AluSg1 SINE Alu -18 291 1 222 235 39 0 chr3 187640822 187640873 -30396285 + L2 LINE L2 3217 3269 -3 252 0 0 0 chr3 187640877 187640905 -30396253 + (TG)n Simple_repeat Simple_repeat 2 29 0 557 222 150 0 chr3 187641202 187641358 -30395800 - MER5A DNA MER1_type -1 188 6 214 333 77 26 chr3 187641864 187641981 -30395177 - MIR SINE MIR -65 143 21 2096 204 23 50 chr3 187643560 187644040 -30393118 + MLT1C LTR MaLR 1 467 0 289 338 179 7 chr3 187644043 187644188 -30392970 - MER91A DNA MER1_type -26 170 1 438 20 0 0 chr3 187644405 187644456 -30392702 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 2028 189 141 27 chr3 187644488 187644969 -30392189 - MLT1F LTR MaLR -4 538 3 517 285 22 0 chr3 187645015 187645152 -30392006 - MER20B DNA MER1_type -604 179 40 254 309 115 7 chr3 187645345 187645484 -30391674 + MIR SINE MIR 20 173 -89 1374 338 151 19 chr3 187646264 187647966 -30389192 + L2 LINE L2 1322 3252 -20 225 0 0 0 chr3 187647969 187647994 -30389164 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1910 112 48 4 chr3 187647998 187648266 -30388892 - AluSx SINE Alu -32 280 1 1263 228 34 7 chr3 187648734 187649028 -30388130 + AluJo SINE Alu 2 303 -9 348 270 0 22 chr3 187649745 187649834 -30387324 - L2 LINE L2 -2 3270 3184 843 140 40 27 chr3 187650154 187650304 -30386854 - MLT1A1-int LTR MaLR -1564 171 20 830 197 31 45 chr3 187650306 187650529 -30386629 - MLT1A1 LTR MaLR 0 365 146 2256 113 0 0 chr3 187650529 187650839 -30386319 - AluSg SINE Alu 0 310 1 183 42 0 0 chr3 187650839 187650863 -30386295 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1890 127 0 31 chr3 187650863 187651155 -30386003 - AluSg SINE Alu -27 283 1 2844 0 0 0 chr3 187651673 187651972 -30385186 - AluYa5 SINE Alu -3 308 10 345 202 121 20 chr3 187652515 187652614 -30384544 - MLT1K LTR MaLR -7 581 473 393 102 0 0 chr3 187652693 187652752 -30384406 + (TG)n Simple_repeat Simple_repeat 2 60 0 1618 128 79 0 chr3 187654306 187654572 -30382586 + AluJb SINE Alu 1 287 -25 1726 180 0 17 chr3 187654697 187654997 -30382161 - AluJb SINE Alu -7 305 11 25 0 0 0 chr3 187655177 187655202 -30381956 + AT_rich Low_complexity Low_complexity 1 25 0 394 316 32 19 chr3 187656323 187656481 -30380677 + MER5A DNA MER1_type 27 186 -3 278 243 236 29 chr3 187658505 187658645 -30378513 - MIR SINE MIR -12 250 82 1123 104 0 0 chr3 187659142 187659286 -30377872 - AluSg/x SINE Alu -21 289 146 2626 69 11 0 chr3 187659286 187659649 -30377509 + L1PA6 LINE L1 5017 5383 -763 4278 57 0 0 chr3 187659658 187660151 -30377007 + L1PA6 LINE L1 5662 6154 0 4054 165 25 7 chr3 187660151 187660873 -30376285 + L1MA9 LINE L1 5571 6309 -3 339 136 0 0 chr3 187662601 187662660 -30374498 + (CA)n Simple_repeat Simple_repeat 2 60 0 345 202 121 20 chr3 187662735 187662834 -30374324 + MLT1K LTR MaLR 473 581 -7 2844 0 0 0 chr3 187663377 187663676 -30373482 + AluYa5 SINE Alu 10 308 -3 1891 127 0 31 chr3 187664195 187664511 -30372647 + AluSg SINE Alu 1 307 0 2310 116 0 0 chr3 187664511 187664821 -30372337 + AluSg SINE Alu 1 310 0 2285 108 16 0 chr3 187665555 187665862 -30371296 - AluSx SINE Alu 0 312 1 751 192 14 7 chr3 187665922 187666068 -30371090 + MLT1A1 LTR MaLR 11 157 -208 2259 94 13 38 chr3 187666069 187666387 -30370771 + AluSg SINE Alu 1 310 0 2510 65 0 3 chr3 187667106 187667413 -30369745 + AluY SINE Alu 1 306 -5 231 375 62 0 chr3 187667519 187667615 -30369543 + L2 LINE L2 3155 3256 -16 237 89 18 71 chr3 187667847 187667903 -30369255 + Alu SINE Alu 1 53 -250 1362 102 31 44 chr3 187669590 187669815 -30367343 + AluSc SINE Alu 88 309 0 21 36 0 0 chr3 187669875 187669903 -30367255 + AT_rich Low_complexity Low_complexity 1 28 0 2271 112 0 3 chr3 187671076 187671380 -30365778 + AluSx SINE Alu 1 303 -9 219 279 59 0 chr3 187672888 187672956 -30364202 + MIR3 SINE MIR 130 201 -7 757 187 8 0 chr3 187674009 187674132 -30363026 + FLAM_C SINE Alu 7 130 -13 227 56 56 0 chr3 187674184 187674220 -30362938 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 638 246 180 35 chr3 187674222 187674506 -30362652 - L2 LINE L2 -1 3312 2988 2390 107 0 0 chr3 187674608 187674918 -30362240 + AluSg SINE Alu 1 310 0 396 296 43 9 chr3 187675568 187675683 -30361475 - MIR3 SINE MIR -9 199 81 396 299 58 7 chr3 187676155 187676292 -30360866 + MIR SINE MIR 17 160 -102 201 290 19 37 chr3 187676746 187676853 -30360305 + CT-rich Low_complexity Low_complexity 5 109 0 1670 156 16 42 chr3 187677769 187678077 -30359081 + AluJo SINE Alu 13 312 0 830 197 31 45 chr3 187678077 187678300 -30358858 + MLT1A1 LTR MaLR 146 365 0 816 153 40 27 chr3 187678302 187678452 -30358706 + MLT1A1-int LTR MaLR 20 171 -1564 348 270 0 22 chr3 187678772 187678861 -30358297 + L2 LINE L2 3184 3270 -2 1263 228 34 7 chr3 187679578 187679872 -30357286 - AluJo SINE Alu -9 303 2 1910 112 48 4 chr3 187680340 187680608 -30356550 + AluSx SINE Alu 1 280 -32 225 0 0 0 chr3 187680612 187680637 -30356521 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1374 338 151 19 chr3 187680640 187682342 -30354816 - L2 LINE L2 -20 3252 1322 254 309 115 7 chr3 187683123 187683262 -30353896 - MIR SINE MIR -89 173 20 517 285 22 0 chr3 187683455 187683592 -30353566 + MER20B DNA MER1_type 40 179 -604 2028 189 141 27 chr3 187683638 187684119 -30353039 + MLT1F LTR MaLR 3 538 -4 438 20 0 0 chr3 187684151 187684202 -30352956 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 289 338 179 7 chr3 187684419 187684564 -30352594 + MER91A DNA MER1_type 1 170 -26 2096 204 23 50 chr3 187684567 187685047 -30352111 - MLT1C LTR MaLR 0 467 1 214 333 77 26 chr3 187686626 187686743 -30350415 + MIR SINE MIR 21 143 -65 557 222 150 0 chr3 187687249 187687405 -30349753 + MER5A DNA MER1_type 6 188 -1 252 0 0 0 chr3 187687702 187687730 -30349428 + (CA)n Simple_repeat Simple_repeat 2 29 0 222 235 39 0 chr3 187687734 187687785 -30349373 - L2 LINE L2 -3 3269 3217 2349 93 0 0 chr3 187688616 187688907 -30348251 + AluSg1 SINE Alu 1 291 -18 2152 125 3 0 chr3 187689866 187690162 -30346996 + AluSp SINE Alu 1 297 -16 2332 52 0 21 chr3 187690383 187690729 -30346429 - AluY SINE Alu 0 340 1 386 323 0 16 chr3 187690746 187690870 -30346288 + L2 LINE L2 3149 3270 -2 * 513 283 89 36 chr3 187690853 187691100 -30346058 - L2 LINE L2 0 3313 3054 1164 293 27 29 chr3 187691104 187691514 -30345644 + LTR16A LTR ERVL 13 421 -29 2107 107 11 0 chr3 187691541 187691848 -30345310 - AluSx SINE Alu 0 310 1 1132 283 112 9 chr3 187691864 187692291 -30344867 - L2 LINE L2 -998 2316 1846 273 278 14 0 chr3 187692394 187692466 -30344692 + L2 LINE L2 3241 3313 0 460 272 21 58 chr3 187693686 187693813 -30343345 + L1MC4 LINE L1 7170 7290 -752 2103 112 0 11 chr3 187693813 187694134 -30343024 - AluSx SINE Alu 0 318 1 460 272 21 58 chr3 187694134 187694196 -30342962 + L1MC4 LINE L1 7290 7353 -689 246 295 70 103 chr3 187694266 187694937 -30342221 - L1MC/D LINE L1 -1904 5904 5256 899 236 40 47 chr3 187695211 187695317 -30341841 - L1ME1 LINE L1 -4 6162 6057 2209 130 0 0 chr3 187695317 187695617 -30341541 - AluSq SINE Alu -13 300 1 899 236 40 47 chr3 187695617 187695807 -30341351 - L1ME1 LINE L1 -109 6057 5868 402 21 0 0 chr3 187695807 187695854 -30341304 + (TTA)n Simple_repeat Simple_repeat 2 48 0 825 231 73 69 chr3 187695861 187695915 -30341243 - MLT1C LTR MaLR 0 473 421 2246 100 0 7 chr3 187695915 187696224 -30340934 + AluSc SINE Alu 1 307 -2 825 231 73 69 chr3 187696224 187696430 -30340728 - MLT1C LTR MaLR -52 421 240 2603 123 17 3 chr3 187696430 187696789 -30340369 - THE1B LTR MaLR 0 364 1 825 231 73 69 chr3 187696789 187696946 -30340212 - MLT1C LTR MaLR -233 240 85 1713 136 0 4 chr3 187696985 187697227 -30339931 - AluSg SINE Alu -69 241 1 2196 228 21 9 chr3 187697341 187697909 -30339249 + MER82 DNA MER2_type 1 624 -29 318 240 57 118 chr3 187698052 187698176 -30338982 - L1M4 LINE L1 -3644 2502 2372 2333 107 0 0 chr3 187698176 187698486 -30338672 - AluSq SINE Alu -3 310 1 1686 178 24 3 chr3 187698486 187698784 -30338374 - AluJb SINE Alu -8 304 1 318 240 57 118 chr3 187698784 187698887 -30338271 - L1M4 LINE L1 -3772 2374 2288 336 265 56 103 chr3 187699459 187699800 -30337358 - HAL1b LINE L1 -888 460 231 24 32 0 0 chr3 187700034 187700065 -30337093 + AT_rich Low_complexity Low_complexity 1 31 0 1537 114 0 0 chr3 187700117 187700328 -30336830 + AluSp SINE Alu 90 300 -13 350 0 0 0 chr3 187700666 187700707 -30336451 - L1PA2 LINE L1 -5 6150 6110 1683 270 81 43 chr3 187702267 187703435 -30333723 + L1ME1 LINE L1 37 1248 -5148 1829 261 74 19 chr3 187703440 187704361 -30332797 + L1ME1 LINE L1 1306 2276 -4120 659 79 0 0 chr3 187704361 187704450 -30332708 - pTR5 LTR ERV1 -2048 390 302 330 214 31 20 chr3 187704452 187704550 -30332608 - LTR30 LTR ERV1 -80 642 544 4418 163 58 34 chr3 187704550 187705634 -30331524 - pTR5 LTR ERV1 -413 2025 743 1767 196 55 88 chr3 187705692 187706019 -30331139 + LTR42 LTR ERVL 3 310 -185 2129 103 4 0 chr3 187706019 187706325 -30330833 + AluSp SINE Alu 1 307 0 1767 196 55 88 chr3 187706325 187706506 -30330652 + LTR42 LTR ERVL 310 495 0 192 68 45 23 chr3 187706533 187706577 -30330581 + (TA)n Simple_repeat Simple_repeat 2 46 0 2088 139 25 37 chr3 187706577 187706653 -30330505 + L1MB4 LINE L1 5783 5858 -322 2325 104 0 0 chr3 187706653 187706951 -30330207 - AluSx SINE Alu -13 299 2 2088 139 25 37 chr3 187706951 187707277 -30329881 + L1MB4 LINE L1 5858 6180 0 1654 255 74 47 chr3 187707281 187707962 -30329196 + L1ME1 LINE L1 2272 2933 -3282 2774 107 2 7 chr3 187707962 187708381 -30328777 + L1PB1 LINE L1 5731 6147 -4 1654 255 74 47 chr3 187708381 187708503 -30328655 + L1ME1 LINE L1 2933 3050 -3165 1856 167 0 23 chr3 187708503 187708803 -30328355 - AluJb SINE Alu -19 293 1 1654 255 74 47 chr3 187708803 187708935 -30328223 + L1ME1 LINE L1 3050 3233 -2982 3232 236 60 36 chr3 187708977 187709444 -30327714 + L1ME1 LINE L1 4071 4526 -1709 1943 154 10 22 chr3 187709444 187709756 -30327402 + AluSx SINE Alu 1 308 -4 3232 236 60 36 chr3 187709756 187709775 -30327383 + L1ME1 LINE L1 4526 4543 -1692 2274 107 0 0 chr3 187709775 187710064 -30327094 + AluSx SINE Alu 1 289 -23 3232 236 60 36 chr3 187710064 187711160 -30325998 + L1ME1 LINE L1 4543 5707 -528 2224 103 3 7 chr3 187711160 187711462 -30325696 + AluSq SINE Alu 1 301 -12 3232 236 60 36 chr3 187711462 187711971 -30325187 + L1ME1 LINE L1 5707 6203 -32 2005 93 22 0 chr3 187711972 187712241 -30324917 + AluSx SINE Alu 1 275 -37 249 33 0 0 chr3 187712245 187712275 -30324883 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1259 117 0 0 chr3 187712275 187712438 -30324720 + AluSp SINE Alu 132 294 -19 2203 121 7 7 chr3 187712778 187713084 -30324074 + AluSq SINE Alu 1 306 -7 469 225 169 17 chr3 187713515 187713693 -30323465 + MIR SINE MIR 58 262 0 399 41 0 0 chr3 187713939 187713988 -30323170 + (TTA)n Simple_repeat Simple_repeat 3 51 0 1981 97 0 4 chr3 187714464 187714722 -30322436 + AluY SINE Alu 1 257 -54 2222 126 31 14 chr3 187714822 187715180 -30321978 + THE1B LTR MaLR 1 364 0 326 0 0 0 chr3 187716440 187716481 -30320677 + L1PA2 LINE L1 6110 6150 -5 1539 114 0 0 chr3 187716820 187717031 -30320127 - AluSp SINE Alu -13 300 90 24 32 0 0 chr3 187717083 187717114 -30320044 + AT_rich Low_complexity Low_complexity 1 31 0 352 310 93 44 chr3 187717268 187717494 -30319664 + L1MEd LINE L1 997 1233 -4886 22 0 0 0 chr3 187718043 187718065 -30319093 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 187718322 187718345 -30318813 + AT_rich Low_complexity Low_complexity 1 23 0 16163 75 2 1 chr3 187718490 187720799 -30316359 + L1P LINE L1 2538 4848 -1298 3109 134 45 9 chr3 187722660 187723218 -30313940 - L1PBa LINE L1 -6285 578 1 476 322 52 29 chr3 187723363 187723810 -30313348 - HAL1 LINE L1 -840 1667 1211 302 258 16 31 chr3 187724338 187724466 -30312692 + LTR16A1 LTR ERVL 328 453 -4 23 33 0 0 chr3 187725772 187725802 -30311356 + AT_rich Low_complexity Low_complexity 1 30 0 448 286 103 11 chr3 187725845 187726020 -30311138 - L1MD2 LINE L1 -254 6105 5915 727 214 71 31 chr3 187726874 187727196 -30309962 + L1MEc LINE L1 1021 1355 -5041 383 314 43 21 chr3 187727214 187727354 -30309804 + MIR SINE MIR 3 145 -117 412 282 37 5 chr3 187727354 187727542 -30309616 + L1MC4a LINE L1 5676 5869 -1939 259 146 0 0 chr3 187727645 187727686 -30309472 + Tigger5 DNA MER2_type 14 54 -2269 394 185 33 11 chr3 187727691 187727783 -30309375 + Tigger5 DNA MER2_type 2230 2323 0 305 114 0 0 chr3 187728190 187728234 -30308924 - Alu SINE Alu -259 44 1 374 232 167 26 chr3 187728234 187728604 -30308554 - Charlie7 DNA MER1_type -2026 586 87 1273 122 0 11 chr3 187729560 187729749 -30307409 - AluY SINE Alu -21 290 104 469 315 117 0 chr3 187730061 187730223 -30306935 + L2 LINE L2 2894 3074 -239 347 218 191 18 chr3 187730303 187730413 -30306745 - MIR3 SINE MIR -6 202 74 1449 285 106 30 chr3 187730422 187731293 -30305865 + L2 LINE L2 2296 3232 -81 356 39 0 0 chr3 187731303 187731354 -30305804 - AluY SINE Alu 0 302 252 421 205 0 12 chr3 187731357 187731440 -30305718 + L2 LINE L2 3230 3311 -2 1992 113 3 17 chr3 187732416 187732717 -30304441 + AluSg SINE Alu 1 297 -13 2439 77 0 3 chr3 187732724 187733059 -30304099 + AluY SINE Alu 1 334 0 1037 181 36 52 chr3 187733468 187733716 -30303442 + MER21B LTR ERV1 571 814 -49 563 221 66 0 chr3 187733804 187733926 -30303232 + L2 LINE L2 3182 3311 -2 1063 140 12 0 chr3 187734346 187734531 -30302627 - AluSg/x SINE Alu 0 310 132 2338 101 0 0 chr3 187734531 187734828 -30302330 - AluSg SINE Alu -13 297 1 2330 112 0 0 chr3 187735386 187735689 -30301469 - AluSg SINE Alu -7 303 1 3390 204 100 20 chr3 187735828 187736617 -30300541 + MER21B LTR ERV1 1 852 -11 294 163 133 61 chr3 187736687 187736785 -30300373 + L2 LINE L2 3190 3294 -19 4950 127 15 22 chr3 187737992 187738561 -30298597 + L1PA16 LINE L1 5261 5823 -343 2257 125 0 6 chr3 187738561 187738874 -30298284 + AluSx SINE Alu 1 311 -1 4950 127 15 22 chr3 187738874 187739166 -30297992 + L1PA16 LINE L1 5823 6116 -50 550 246 8 0 chr3 187739203 187739325 -30297833 + MER50-int LTR ERV1 2788 2910 -4295 30 0 0 0 chr3 187739347 187739377 -30297781 + AT_rich Low_complexity Low_complexity 1 30 0 926 200 29 16 chr3 187739382 187739627 -30297531 + L1MB8 LINE L1 5930 6177 -1 593 264 133 12 chr3 187739636 187740063 -30297095 + L1MEd LINE L1 868 1387 -4862 271 212 36 135 chr3 187740823 187740954 -30296204 + L1MEd LINE L1 2795 2898 -3231 1432 185 85 0 chr3 187740954 187741242 -30295916 - AluJo SINE Alu 0 310 1 271 212 36 135 chr3 187741242 187741331 -30295827 + L1MEd LINE L1 2898 2994 -3135 23 0 0 0 chr3 187741536 187741559 -30295599 + AT_rich Low_complexity Low_complexity 1 23 0 350 203 0 0 chr3 187741814 187741888 -30295270 - LTR33 LTR ERVL -53 468 395 258 293 81 24 chr3 187741921 187742044 -30295114 - LTR33 LTR ERVL -247 274 145 4074 189 24 14 chr3 187742050 187742856 -30294302 + ERVL LTR ERVL 1324 2137 -3627 645 229 90 6 chr3 187742882 187743048 -30294110 - LTR16B LTR ERVL -284 180 1 3048 218 80 68 chr3 187744045 187745502 -30291656 - MER31-int LTR ERV1 -774 4349 2636 766 158 0 0 chr3 187745567 187745681 -30291477 - FRAM SINE Alu -30 146 33 272 246 0 0 chr3 187745702 187745767 -30291391 + AluSp SINE Alu 120 184 -119 997 164 46 0 chr3 187745767 187745919 -30291239 - AluSx SINE Alu -153 159 1 489 232 7 7 chr3 187745920 187746058 -30291100 - MER31-int LTR ERV1 -2335 2601 2464 * 911 179 49 95 chr3 187746049 187746458 -30290700 - MER31-int LTR ERV1 -2556 2567 2178 2181 118 0 6 chr3 187746533 187746846 -30290312 - AluSx SINE Alu -1 311 1 2442 45 0 19 chr3 187746991 187747301 -30289857 - AluY SINE Alu -7 304 1 26 30 0 0 chr3 187747328 187747361 -30289797 + AT_rich Low_complexity Low_complexity 1 33 0 1707 171 22 0 chr3 187747536 187747810 -30289348 + AluJb SINE Alu 15 294 -18 1366 225 68 99 chr3 187747866 187747992 -30289166 - MER31-int LTR ERV1 -3297 1826 1698 2163 134 3 0 chr3 187747992 187748299 -30288859 - AluSq SINE Alu -5 308 1 1366 225 68 99 chr3 187748299 187748906 -30288252 - MER31-int LTR ERV1 -3425 1698 1116 347 127 63 0 chr3 187748923 187748986 -30288172 - MER34C LTR ERV1 -362 223 157 2166 122 3 0 chr3 187748991 187749294 -30287864 + AluSx SINE Alu 1 304 -8 398 293 38 0 chr3 187749294 187749427 -30287731 - MER31-int LTR ERV1 -4133 990 853 341 225 36 18 chr3 187749486 187749597 -30287561 - MER31-int LTR ERV1 -6681 856 744 256 220 0 156 chr3 187749639 187749748 -30287410 - MER31-int LTR ERV1 -6894 643 552 3804 152 30 20 chr3 187749753 187749993 -30287165 + Tigger2 DNA MER2_type 1 237 -2481 2138 147 50 75 chr3 187749993 187750180 -30286978 + MSTB1 LTR MaLR 1 191 -241 2113 131 16 0 chr3 187750180 187750485 -30286673 - AluSx SINE Alu -2 310 1 2138 147 50 75 chr3 187750485 187750512 -30286646 + MSTB1 LTR MaLR 191 217 -215 1705 171 7 16 chr3 187750512 187750817 -30286341 + AluJb SINE Alu 1 302 -10 2138 147 50 75 chr3 187750817 187751044 -30286114 + MSTB1 LTR MaLR 217 432 0 3804 152 30 20 chr3 187751044 187751540 -30285618 + Tigger2 DNA MER2_type 237 744 -1974 1403 165 12 0 chr3 187751593 187751848 -30285310 + Tigger2 DNA MER2_type 2461 2718 0 250 132 0 0 chr3 187751862 187751900 -30285258 + L2 LINE L2 3263 3300 -13 736 117 8 8 chr3 187751940 187752068 -30285090 + (TTTC)n Simple_repeat Simple_repeat 1 128 0 2186 108 7 0 chr3 187752083 187752369 -30284789 - AluSc SINE Alu -21 288 1 1515 181 40 98 chr3 187752979 187753376 -30283782 + MLT1A2 LTR MaLR 1 374 0 2169 114 0 0 chr3 187753491 187753781 -30283377 - AluSx SINE Alu -2 310 21 2162 169 50 18 chr3 187753830 187754080 -30283078 - MSTD LTR MaLR 0 396 128 407 19 0 19 chr3 187754080 187754133 -30283025 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 2162 169 50 18 chr3 187754133 187754266 -30282892 - MSTD LTR MaLR -268 128 1 2760 155 19 19 chr3 187754291 187754723 -30282435 - MSTB1 LTR MaLR 0 432 1 2458 75 0 3 chr3 187754817 187755123 -30282035 - AluSx SINE Alu -5 307 3 1112 311 124 44 chr3 187755174 187755606 -30281552 + L3 LINE CR1 620 1016 -561 2612 109 91 10 chr3 187755606 187756002 -30281156 - MSTA LTR MaLR 0 428 1 1112 311 124 44 chr3 187756002 187756435 -30280723 + L3 LINE CR1 1016 1554 -23 181 238 95 0 chr3 187756426 187756468 -30280690 - L3 LINE CR1 -90 1487 1442 * 2060 119 0 34 chr3 187756752 187757068 -30280090 - AluSq SINE Alu 0 308 3 300 91 0 0 chr3 187757911 187757955 -30279203 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 267 214 82 20 chr3 187758000 187758098 -30279060 - MIR SINE MIR -74 188 85 225 333 12 12 chr3 187758149 187758230 -30278928 - L2 LINE L2 -6 3266 3186 1463 150 111 39 chr3 187758599 187758879 -30278279 + AluJo SINE Alu 1 300 -2 198 0 0 0 chr3 187759352 187759374 -30277784 + (A)n Simple_repeat Simple_repeat 1 22 0 269 361 28 0 chr3 187759720 187759828 -30277330 - L2 LINE L2 -8 3264 3154 855 147 0 22 chr3 187759835 187759971 -30277187 + FLAM_C SINE Alu 1 133 0 186 43 0 0 chr3 187760032 187760055 -30277103 + (CAA)n Simple_repeat Simple_repeat 2 24 0 190 148 0 33 chr3 187760541 187760602 -30276556 + (CGG)n Simple_repeat Simple_repeat 3 61 0 485 171 14 0 chr3 187762276 187762422 -30274736 + CT-rich Low_complexity Low_complexity 1 148 0 199 227 0 0 chr3 187763363 187763407 -30273751 - MIR SINE MIR -79 129 86 326 313 75 20 chr3 187763466 187763613 -30273545 - MIR SINE MIR -30 232 78 569 179 54 9 chr3 187763625 187763737 -30273421 + MER3 DNA MER1_type 9 125 -84 747 32 0 43 chr3 187763748 187763841 -30273317 - AluSg/x SINE Alu -13 299 211 2256 67 0 7 chr3 187763847 187764131 -30273027 - AluSx SINE Alu -28 284 3 395 164 0 0 chr3 187764133 187764206 -30272952 + MER3 DNA MER1_type 133 205 -4 278 160 20 0 chr3 187764172 187764222 -30272936 - MER3 DNA MER1_type -124 85 35 * 1040 152 9 71 chr3 187764263 187764487 -30272671 - AluJb SINE Alu -17 295 86 180 0 0 0 chr3 187765200 187765220 -30271938 + (T)n Simple_repeat Simple_repeat 1 20 0 305 283 50 50 chr3 187765854 187766013 -30271145 + MIR SINE MIR 72 230 -32 189 0 0 0 chr3 187766684 187766705 -30270453 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 198 0 0 0 chr3 187766704 187766726 -30270432 + (TA)n Simple_repeat Simple_repeat 1 22 0 1375 176 54 30 chr3 187767245 187767541 -30269617 - AluJo SINE Alu -9 303 1 3612 153 35 26 chr3 187769402 187770057 -30267101 + L1MB4 LINE L1 5520 6180 0 2230 116 3 0 chr3 187770447 187770748 -30266410 - AluSp SINE Alu -11 302 1 2329 107 0 0 chr3 187771306 187771605 -30265553 - AluSx SINE Alu -13 299 1 317 23 0 23 chr3 187771622 187771665 -30265493 + (TG)n Simple_repeat Simple_repeat 2 43 0 1582 83 5 32 chr3 187771993 187772211 -30264947 - AluSp SINE Alu -1 312 101 1011 110 0 7 chr3 187772439 187772585 -30264573 + L1PB1 LINE L1 5957 6101 -50 1504 147 65 31 chr3 187773004 187773296 -30263862 - AluJo SINE Alu -10 302 1 185 274 97 16 chr3 187773588 187773650 -30263508 - MER5A DNA MER1_type -79 110 44 186 267 0 0 chr3 187773931 187773976 -30263182 - MIR SINE MIR 0 262 218 221 352 0 14 chr3 187774103 187774174 -30262984 + L2 LINE L2 3202 3271 -1 2393 85 0 16 chr3 187774411 187774718 -30262440 + AluSx SINE Alu 1 302 -10 2536 50 0 3 chr3 187776701 187777002 -30260156 - AluY SINE Alu -11 300 1 21 36 0 0 chr3 187777133 187777161 -30259997 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 187778605 187778626 -30258532 + AT_rich Low_complexity Low_complexity 1 21 0 337 274 162 8 chr3 187781559 187781676 -30255482 + L2 LINE L2 3136 3270 -2 251 178 22 0 chr3 187781891 187781936 -30255222 - MLT1K LTR MaLR -23 565 520 2511 60 0 0 chr3 187782155 187782453 -30254705 - AluY SINE Alu -13 298 1 1801 114 100 4 chr3 187783234 187783505 -30253653 - AluSg SINE Alu -13 297 1 309 51 0 0 chr3 187783662 187783701 -30253457 + (TCCA)n Simple_repeat Simple_repeat 2 40 0 180 229 148 0 chr3 187784648 187784709 -30252449 + MIR3 SINE MIR 136 205 -3 885 130 0 75 chr3 187784748 187784909 -30252249 + MLT1A1 LTR MaLR 1 149 -216 792 181 114 20 chr3 187784918 187785067 -30252091 + FAM SINE Alu 1 163 -22 1215 170 14 5 chr3 187785091 187785303 -30251855 + MLT1A1 LTR MaLR 152 365 0 21 0 0 0 chr3 187785319 187785340 -30251818 + AT_rich Low_complexity Low_complexity 1 21 0 226 140 60 40 chr3 187785748 187785798 -30251360 + L2 LINE L2 3262 3312 -1 2369 85 0 0 chr3 187785972 187786265 -30250893 + AluSg SINE Alu 1 293 -17 302 275 75 0 chr3 187787241 187787361 -30249797 - MIR SINE MIR -57 205 77 186 219 0 24 chr3 187787782 187787823 -30249335 - L2 LINE L2 -1512 1802 1763 2164 116 0 3 chr3 187789344 187789645 -30247513 - AluSx SINE Alu -12 300 1 881 229 39 35 chr3 187789695 187789926 -30247232 - MIR SINE MIR 0 262 31 434 62 0 47 chr3 187790392 187790456 -30246702 - L1PA8 LINE L1 -8 6164 6104 234 287 36 92 chr3 187790802 187790997 -30246161 - MIR SINE MIR -57 205 22 610 233 58 24 chr3 187791607 187791813 -30245345 - L1MC5 LINE L1 -44 7917 7705 23 86 0 0 chr3 187792454 187792512 -30244646 + AT_rich Low_complexity Low_complexity 1 58 0 511 303 56 10 chr3 187792735 187792930 -30244228 - MIR SINE MIR -51 211 8 939 187 45 15 chr3 187793017 187793215 -30243943 + MER3 DNA MER1_type 1 204 -5 238 313 54 18 chr3 187796131 187796243 -30240915 - L3 LINE CR1 -6 1571 1456 216 368 152 8 chr3 187796240 187796365 -30240793 + MIR3 SINE MIR 43 185 -23 * 840 246 95 9 chr3 187796584 187796645 -30240513 + MER112 DNA MER1_type 8 62 -198 390 21 0 0 chr3 187796645 187796692 -30240466 + (CA)n Simple_repeat Simple_repeat 2 48 0 840 246 95 9 chr3 187796692 187796862 -30240296 + MER112 DNA MER1_type 62 259 -1 483 349 72 4 chr3 187796863 187797112 -30240046 - L3 LINE CR1 -270 1307 1042 400 271 42 8 chr3 187797170 187797288 -30239870 - L2 LINE L2 -5 3308 3187 32 0 0 0 chr3 187797520 187797552 -30239606 + AT_rich Low_complexity Low_complexity 1 32 0 190 286 61 71 chr3 187797835 187797933 -30239225 - L2 LINE L2 -38 3275 3179 2005 131 10 3 chr3 187798895 187799200 -30237958 - AluSx SINE Alu -5 307 1 1732 177 0 29 chr3 187801187 187801498 -30235660 - AluJo SINE Alu -10 302 1 21 36 0 0 chr3 187802382 187802410 -30234748 + AT_rich Low_complexity Low_complexity 1 28 0 217 284 98 49 chr3 187803552 187803654 -30233504 - MIR3 SINE MIR -4 204 98 1407 240 80 62 chr3 187804035 187804485 -30232673 - LTR40c LTR ERVL -1 464 7 1770 164 3 7 chr3 187805087 187805380 -30231778 + AluJb SINE Alu 1 292 -20 231 36 0 0 chr3 187805393 187805421 -30231737 + (CA)n Simple_repeat Simple_repeat 2 29 0 208 270 111 0 chr3 187805568 187805631 -30231527 - MIR SINE MIR -114 148 79 440 300 0 97 chr3 187805723 187805960 -30231198 + L2 LINE L2 3100 3313 0 615 222 58 103 chr3 187806125 187806386 -30230772 + Charlie8 DNA MER1_type 37 285 -2132 1858 177 3 0 chr3 187806999 187807293 -30229865 + AluJo SINE Alu 1 295 -17 266 317 174 19 chr3 187809179 187809340 -30227818 - MIR3 SINE MIR -10 198 13 21 0 0 0 chr3 187810077 187810098 -30227060 + AT_rich Low_complexity Low_complexity 1 21 0 197 263 40 66 chr3 187810723 187810799 -30226359 + L2 LINE L2 3199 3272 0 340 215 177 32 chr3 187811171 187811329 -30225829 - MER117 DNA MER1_type -3 194 14 276 30 0 0 chr3 187811342 187811375 -30225783 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1897 120 64 56 chr3 187811616 187811973 -30225185 + MER46B DNA MER2_type 1 235 -1 258 254 0 0 chr3 187812476 187812531 -30224627 + (TG)n Simple_repeat Simple_repeat 1 55 0 396 0 0 0 chr3 187812795 187812839 -30224319 + (TG)n Simple_repeat Simple_repeat 2 45 0 210 372 0 0 chr3 187813442 187813536 -30223622 - MIR3 SINE MIR -3 205 112 1872 142 3 42 chr3 187813738 187814047 -30223111 - AluJo SINE Alu -15 297 1 1080 188 87 47 chr3 187814053 187814190 -30222968 - AluJo SINE Alu -12 290 160 2600 40 0 0 chr3 187814190 187814487 -30222671 - AluY SINE Alu -14 297 1 1080 188 87 47 chr3 187814487 187814626 -30222532 - AluJo SINE Alu -142 160 3 227 292 31 15 chr3 187814757 187814822 -30222336 - MER5B DNA MER1_type -58 120 55 551 188 8 16 chr3 187814822 187814950 -30222208 - L1MB8 LINE L1 0 6178 6052 1415 170 68 72 chr3 187815160 187815560 -30221598 - L1MB7 LINE L1 -97 6087 5690 181 284 14 27 chr3 187815562 187815636 -30221522 - MER5A DNA MER1_type -115 74 2 343 281 143 39 chr3 187816668 187816718 -30220440 - L1ME4a LINE L1 -113 6008 5965 246 32 0 0 chr3 187816718 187816749 -30220409 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 343 281 143 39 chr3 187816749 187816901 -30220257 - L1ME4a LINE L1 -156 5965 5785 485 189 68 15 chr3 187817611 187817743 -30219415 + L1ME4a LINE L1 5962 6100 -21 317 232 58 22 chr3 187818466 187818604 -30218554 - L1ME4a LINE L1 -11 6110 5968 195 296 61 41 chr3 187819007 187819105 -30218053 - MIR SINE MIR -64 198 99 456 260 49 8 chr3 187820828 187820951 -30216207 + Charlie1 DNA MER1_type 1 128 -2633 265 271 29 0 chr3 187821127 187821197 -30215961 + L2 LINE L2 3242 3313 0 210 303 15 15 chr3 187822339 187822405 -30214753 + L2 LINE L2 3234 3299 -14 267 294 118 7 chr3 187823106 187823242 -30213916 + MIR SINE MIR 74 224 -38 189 245 0 20 chr3 187823492 187823541 -30213617 - MIR SINE MIR -114 148 101 180 311 212 45 chr3 187825186 187825318 -30211840 - MIR3 SINE MIR -23 185 32 589 192 0 0 chr3 187826581 187826680 -30210478 - FLAM_C SINE Alu -26 117 19 799 135 0 24 chr3 187827118 187827244 -30209914 - FLAM_A SINE Alu -9 124 2 2111 88 0 0 chr3 187828871 187829134 -30208024 + AluSg SINE Alu 39 301 -9 2623 20 3 3 chr3 187830108 187830411 -30206747 - AluYa5 SINE Alu -8 303 1 2022 103 7 18 chr3 187831790 187832063 -30205095 + AluSx SINE Alu 33 302 -10 219 195 0 0 chr3 187834490 187834531 -30202627 + L2 LINE L2 3232 3272 0 280 339 89 41 chr3 187834787 187835179 -30201979 + L2 LINE L2 2468 2878 -436 876 159 0 0 chr3 187835549 187835681 -30201477 + FLAM_A SINE Alu 1 132 -1 2139 175 46 61 chr3 187837194 187837513 -30199645 - L1MB8 LINE L1 -3 6175 5876 2339 95 0 0 chr3 187837513 187837807 -30199351 - AluSx SINE Alu -16 296 3 2139 175 46 61 chr3 187837807 187838057 -30199101 - L1MB8 LINE L1 -302 5876 5624 23 33 0 0 chr3 187838429 187838459 -30198699 + AT_rich Low_complexity Low_complexity 1 30 0 2439 79 0 7 chr3 187839837 187840141 -30197017 + AluY SINE Alu 6 307 -4 361 304 56 8 chr3 187840188 187840313 -30196845 - L2 LINE L2 0 3313 3183 270 213 234 0 chr3 187841341 187841435 -30195723 + L2 LINE L2 3156 3271 -1 180 0 0 0 chr3 187841530 187841550 -30195608 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 305 236 48 117 chr3 187841581 187841655 -30195503 + MER102a DNA MER1_type 84 162 -1255 2033 75 42 4 chr3 187841655 187841920 -30195238 + AluSp SINE Alu 19 293 -20 305 236 48 117 chr3 187841920 187842095 -30195063 + MER102a DNA MER1_type 162 321 -9 800 134 8 0 chr3 187842693 187842812 -30194346 - FLAM_C SINE Alu -13 120 1 1477 178 31 14 chr3 187843998 187844285 -30192873 - AluJo SINE Alu -20 292 1 260 211 0 0 chr3 187844338 187844390 -30192768 - AluJ/monomer SINE Alu -8 294 243 21 0 0 0 chr3 187844745 187844766 -30192392 + AT_rich Low_complexity Low_complexity 1 21 0 2023 142 0 0 chr3 187845039 187845334 -30191824 - AluSx SINE Alu -15 297 3 286 315 176 0 chr3 187845782 187845947 -30191211 - MIR SINE MIR -20 242 49 391 280 153 7 chr3 187848330 187848480 -30188678 + MIR SINE MIR 22 193 -69 1718 132 98 11 chr3 187848617 187848904 -30188254 - AluSx SINE Alu 0 312 1 314 291 73 36 chr3 187849476 187849586 -30187572 + L1MD2 LINE L1 5959 6072 -287 1641 180 0 17 chr3 187849924 187850219 -30186939 - AluJb SINE Alu -22 290 1 183 156 0 0 chr3 187850933 187850965 -30186193 + GA-rich Low_complexity Low_complexity 2 33 0 2403 64 14 0 chr3 187852061 187852358 -30184800 + AluSp SINE Alu 1 301 -12 230 208 0 111 chr3 187852845 187852917 -30184241 - L2 LINE L2 -1 3312 3249 222 304 50 77 chr3 187853041 187853261 -30183897 - L2 LINE L2 -183 3089 2876 2010 129 29 0 chr3 187853365 187853644 -30183514 - AluSx SINE Alu -25 287 1 22 0 0 0 chr3 187853880 187853902 -30183256 + AT_rich Low_complexity Low_complexity 1 22 0 420 149 54 0 chr3 187854704 187854778 -30182380 - MLT1F LTR MaLR -2 540 463 407 233 79 31 chr3 187854780 187854997 -30182161 - MLT1F LTR MaLR -264 303 1 433 262 121 21 chr3 187854999 187855140 -30182018 - MLT1F-int LTR MaLR -2 1369 1215 257 169 17 0 chr3 187856193 187856252 -30180906 + (TG)n Simple_repeat Simple_repeat 2 61 0 202 304 148 26 chr3 187856976 187857091 -30180067 - MIR SINE MIR -124 138 10 2011 110 55 3 chr3 187857658 187857949 -30179209 - AluY SINE Alu -4 307 2 1674 150 52 14 chr3 187858321 187858608 -30178550 + AluJo SINE Alu 1 298 -14 854 189 14 34 chr3 187860755 187860903 -30176255 - FRAM SINE Alu -19 147 3 370 143 91 0 chr3 187861947 187862024 -30175134 + MIR SINE MIR 101 184 -78 2069 104 0 48 chr3 187862499 187862808 -30174350 + AluSx SINE Alu 1 294 -18 677 293 62 9 chr3 187862902 187863127 -30174031 + MIR SINE MIR 26 262 0 190 267 174 12 chr3 187863587 187863673 -30173485 + L2 LINE L2 3149 3248 -24 1795 177 8 46 chr3 187863700 187864072 -30173086 - MLT1A1 LTR MaLR 0 365 8 21 0 0 0 chr3 187864456 187864477 -30172681 + AT_rich Low_complexity Low_complexity 1 21 0 2244 86 4 0 chr3 187864576 187864900 -30172258 + AluSc SINE Alu 1 325 0 2503 176 29 2 chr3 187864917 187865331 -30171827 - MSTB LTR MaLR -1 425 1 308 209 15 15 chr3 187866588 187866655 -30170503 + Tigger5 DNA MER2_type 2257 2323 0 2154 118 3 3 chr3 187866755 187867061 -30170097 - AluSq SINE Alu -7 306 1 2174 95 3 16 chr3 187867061 187867365 -30169793 - AluSg SINE Alu -10 300 1 415 205 0 12 chr3 187868341 187868424 -30168734 - L2 LINE L2 -2 3311 3230 420 51 0 0 chr3 187868427 187868486 -30168672 + Alu SINE Alu 250 308 -2 916 307 100 37 chr3 187868488 187869311 -30167847 - L2 LINE L2 -81 3232 2348 1717 156 18 7 chr3 187869423 187869706 -30167452 - AluSx SINE Alu -26 286 1 237 237 26 13 chr3 187870158 187870234 -30166924 + MER5B DNA MER1_type 1 77 -101 220 216 59 0 chr3 187870331 187870382 -30166776 + MER5B DNA MER1_type 125 178 0 28 29 0 0 chr3 187870577 187870612 -30166546 + AT_rich Low_complexity Low_complexity 1 35 0 2372 93 3 0 chr3 187870620 187870930 -30166228 + AluSp SINE Alu 2 312 -1 308 209 15 15 chr3 187871024 187871091 -30166067 - Tigger5 DNA MER2_type 0 2323 2257 854 189 14 34 chr3 187873439 187873587 -30163571 + FRAM SINE Alu 3 147 -19 328 297 0 59 chr3 187925637 187925755 -30111403 + LTR16C LTR ERVL 261 371 -120 618 154 29 9 chr3 187925755 187925885 -30111273 + MSTA LTR MaLR 1 140 -235 550 256 0 15 chr3 187926336 187926469 -30110689 - MER94 DNA DNA -1 133 3 186 188 21 21 chr3 187927298 187927346 -30109812 + L2 LINE L2 3262 3309 -4 2134 118 7 3 chr3 187927759 187928065 -30109093 - AluSx SINE Alu -5 307 1 2325 97 0 0 chr3 187928876 187929174 -30107984 - AluSx SINE Alu -14 298 1 1152 126 0 24 chr3 187931520 187931687 -30105471 - MLT1B LTR MaLR 0 390 228 2162 138 51 28 chr3 187931687 187932043 -30105115 - THE1B LTR MaLR 0 364 1 340 21 21 0 chr3 187932050 187932097 -30105061 - THE1B-int LTR MaLR -7 1573 1526 219 36 0 0 chr3 187932591 187932619 -30104539 + (TA)n Simple_repeat Simple_repeat 2 29 0 1554 161 38 4 chr3 187932779 187933046 -30104112 - AluJo SINE Alu -2 310 35 25 51 0 0 chr3 187933072 187933111 -30104047 + AT_rich Low_complexity Low_complexity 1 39 0 272 125 0 0 chr3 187933978 187934018 -30103140 - MADE1 DNA Mariner -40 40 1 548 262 51 50 chr3 187934669 187934908 -30102250 + MIR SINE MIR 24 262 0 2166 129 36 24 chr3 187935936 187936269 -30100889 + MER1B DNA MER1_type 1 337 0 251 0 0 56 chr3 187936397 187936433 -30100725 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1912 103 4 15 chr3 187936436 187936707 -30100451 - AluY SINE Alu -30 281 14 280 296 225 22 chr3 187937002 187937370 -30099788 + L2 LINE L2 2621 3064 -249 939 202 58 18 chr3 187938578 187938801 -30098357 + MLT1B LTR MaLR 1 232 -158 2375 112 48 25 chr3 187938801 187939157 -30098001 + THE1B LTR MaLR 1 364 0 10833 94 25 6 chr3 187939157 187940616 -30096542 + THE1B-int LTR MaLR 1 1486 -94 1968 170 32 68 chr3 187941325 187941377 -30095781 + MSTD LTR MaLR 1 53 -343 2474 64 3 6 chr3 187941377 187941689 -30095469 + AluY SINE Alu 1 311 0 1968 170 32 68 chr3 187941689 187942047 -30095111 + MSTD LTR MaLR 53 396 0 725 128 10 0 chr3 187942562 187942664 -30094494 + AluSq/x SINE Alu 2 104 -209 572 291 12 29 chr3 187942872 187943113 -30094045 - 7SLRNA srpRNA srpRNA -35 285 49 1410 203 136 9 chr3 187945047 187945475 -30091683 + Charlie4a DNA MER1_type 24 505 -3 235 271 213 62 chr3 187946173 187946413 -30090745 + L2 LINE L2 2992 3267 -5 186 317 85 12 chr3 187946729 187946811 -30090347 - L2 LINE L2 -49 3223 3136 437 263 59 13 chr3 187950022 187950174 -30086984 - MIR SINE MIR -73 189 31 254 302 0 0 chr3 187950284 187950347 -30086811 - L2 LINE L2 -3 3310 3248 2171 193 61 20 chr3 187950512 187950969 -30086189 + MLT1D LTR MaLR 23 498 -7 1749 78 0 168 chr3 187952210 187952585 -30084573 - AluSg1 SINE Alu 0 319 1 1281 251 193 24 chr3 187952734 187953227 -30083931 - MLT1G LTR MaLR -13 577 2 180 0 0 0 chr3 187953720 187953740 -30083418 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 29 28 0 0 chr3 187953865 187953901 -30083257 + AT_rich Low_complexity Low_complexity 1 36 0 1279 167 75 71 chr3 187953929 187954210 -30082948 + AluJo SINE Alu 1 282 -30 1279 174 0 5 chr3 187955746 187955959 -30081199 + 7SLRNA srpRNA srpRNA 105 316 -4 1378 187 84 7 chr3 187956515 187956799 -30080359 - AluJb SINE Alu -6 306 1 32 0 0 0 chr3 187957384 187957416 -30079742 + AT_rich Low_complexity Low_complexity 1 32 0 237 229 83 73 chr3 187957433 187957529 -30079629 - L2 LINE L2 0 3272 3176 186 43 0 0 chr3 187958120 187958143 -30079015 + (A)n Simple_repeat Simple_repeat 1 23 0 2445 83 0 10 chr3 187958201 187958515 -30078643 - AluY SINE Alu 0 311 1 351 270 26 35 chr3 187958554 187958669 -30078489 + MIR SINE MIR 77 190 -72 184 240 0 20 chr3 187958715 187958765 -30078393 - MIR SINE MIR -28 234 186 1926 137 14 67 chr3 187962616 187962975 -30074183 - MLT1B LTR MaLR 0 390 51 411 203 22 101 chr3 187964314 187964452 -30072706 + L1MC4 LINE L1 6934 7060 -982 512 239 66 30 chr3 187964477 187964837 -30072321 + L1MC4 LINE L1 7128 7569 -473 711 224 85 22 chr3 187964996 187965219 -30071939 - L2 LINE L2 -2 3311 3075 558 226 36 92 chr3 187965252 187965305 -30071853 - MER3 DNA MER1_type -25 184 130 2138 109 7 0 chr3 187965305 187965598 -30071560 + AluSp SINE Alu 1 295 -18 558 226 36 92 chr3 187965598 187965739 -30071419 - MER3 DNA MER1_type -79 130 1 1330 267 78 72 chr3 187965743 187965915 -30071243 - L2 LINE L2 -250 3063 2894 2298 101 0 10 chr3 187965915 187966223 -30070935 + AluY SINE Alu 1 305 -6 1330 267 78 72 chr3 187966223 187966767 -30070391 - L2 LINE L2 -419 2894 2345 891 169 16 71 chr3 187967326 187967509 -30069649 - MER2 DNA MER2_type -172 173 1 1987 92 7 18 chr3 187969871 187970153 -30067005 + AluY SINE Alu 1 279 -32 409 149 0 0 chr3 187970989 187971063 -30066095 + AluS SINE Alu 230 303 -6 2184 105 0 13 chr3 187971445 187971749 -30065409 + AluSx SINE Alu 3 302 -10 1902 120 0 0 chr3 187972969 187973228 -30063930 - AluSx SINE Alu -12 300 42 238 288 0 0 chr3 187973467 187973526 -30063632 + MER5A DNA MER1_type 51 109 -80 400 250 76 0 chr3 187973658 187973750 -30063408 + L2 LINE L2 3170 3268 -4 2268 105 0 3 chr3 187974460 187974756 -30062402 - AluSq SINE Alu -17 296 2 749 136 56 8 chr3 187974761 187974886 -30062272 - AluJb SINE Alu -179 133 3 253 298 37 64 chr3 187975306 187975494 -30061664 + L2 LINE L2 2878 3060 -212 207 156 0 0 chr3 187976037 187976069 -30061089 + (TG)n Simple_repeat Simple_repeat 1 32 0 1949 109 76 4 chr3 187976122 187976398 -30060760 - AluSx SINE Alu -16 296 1 241 297 55 44 chr3 187976566 187976657 -30060501 + MIR3 SINE MIR 82 173 -35 396 88 0 0 chr3 187976744 187976801 -30060357 + (CA)n Simple_repeat Simple_repeat 1 57 0 635 264 37 12 chr3 187976917 187977080 -30060078 + MER5A DNA MER1_type 23 189 0 209 116 0 47 chr3 187979425 187979468 -30057690 + (GAAAA)n Simple_repeat Simple_repeat 5 45 0 2209 112 7 0 chr3 187981253 187981548 -30055610 + AluJb SINE Alu 1 297 -15 1273 244 42 42 chr3 187981823 187982228 -30054930 + MLT1D LTR MaLR 57 461 -44 686 194 8 52 chr3 187982234 187982368 -30054790 + FLAM_A SINE Alu 1 128 -5 1824 124 7 38 chr3 187984410 187984701 -30052457 + AluJb SINE Alu 1 282 -30 1552 121 9 13 chr3 187985986 187986218 -30050940 - AluJo SINE Alu -24 288 58 2308 91 10 0 chr3 187986828 187987126 -30050032 + AluSq SINE Alu 1 301 -12 27 62 0 0 chr3 187987273 187987321 -30049837 + AT_rich Low_complexity Low_complexity 1 48 0 183 250 115 42 chr3 187988219 187988315 -30048843 + MIR SINE MIR 82 184 -78 239 93 23 0 chr3 187988875 187988918 -30048240 + (CTTA)n Simple_repeat Simple_repeat 4 47 0 477 0 0 0 chr3 187989887 187989940 -30047218 + (CA)n Simple_repeat Simple_repeat 2 54 0 270 264 14 14 chr3 187990453 187990525 -30046633 + L2 LINE L2 3199 3270 -2 3263 184 54 13 chr3 187990692 187991013 -30046145 + L1MB8 LINE L1 4871 5177 -1001 2148 127 0 34 chr3 187991013 187991336 -30045822 + AluSx SINE Alu 1 312 0 3263 184 54 13 chr3 187991336 187992110 -30045048 + L1MB8 LINE L1 5177 6007 -171 2253 120 0 0 chr3 187992701 187993002 -30044156 - AluSx SINE Alu -11 301 1 529 255 45 89 chr3 187993765 187994012 -30043146 - MER102a DNA MER1_type -3 327 92 1421 190 55 82 chr3 187994071 187994424 -30042734 + MLT1A2 LTR MaLR 1 417 -15 581 242 18 57 chr3 187994444 187994671 -30042487 - L1MC4 LINE L1 -72 7970 7753 1904 112 11 18 chr3 187994863 187995175 -30041983 + AluSg SINE Alu 5 314 0 2329 94 7 0 chr3 187995857 187996156 -30041002 - AluSx SINE Alu -3 309 9 635 286 63 0 chr3 187997180 187997355 -30039803 - MER91B DNA MER1_type 0 190 5 22 70 0 0 chr3 188000599 188000642 -30036516 + AT_rich Low_complexity Low_complexity 1 43 0 469 75 15 0 chr3 188000673 188000740 -30036418 - MER41A LTR ERV1 -88 466 399 201 231 0 0 chr3 188001839 188001878 -30035280 + (CA)n Simple_repeat Simple_repeat 1 39 0 2115 125 0 0 chr3 188002264 188002581 -30034577 - AluSq SINE Alu 0 317 1 239 81 0 0 chr3 188002614 188002651 -30034507 - L1MA1 LINE L1 -4 6298 6262 1563 148 60 21 chr3 188004586 188004870 -30032288 + AluJb SINE Alu 1 295 -17 798 219 24 53 chr3 188005136 188005223 -30031935 + L1MD3 LINE L1 7756 7844 -151 2467 84 0 0 chr3 188005223 188005533 -30031625 - AluSx SINE Alu -2 310 1 798 219 24 53 chr3 188005533 188005692 -30031466 + L1MD3 LINE L1 7844 7995 0 690 289 72 5 chr3 188005747 188005955 -30031203 - MIR SINE MIR -21 241 20 931 171 41 18 chr3 188006278 188006448 -30030710 + AluSc SINE Alu 128 301 -8 2190 272 102 39 chr3 188006587 188007867 -30029291 - L2 LINE L2 -16 3297 1927 255 270 110 50 chr3 188007927 188008107 -30029051 + MIR SINE MIR 18 201 -61 29 0 0 0 chr3 188008126 188008155 -30029003 + AT_rich Low_complexity Low_complexity 1 29 0 34 55 0 0 chr3 188010044 188010099 -30027059 + AT_rich Low_complexity Low_complexity 1 55 0 210 158 0 0 chr3 188010425 188010463 -30026695 + T-rich Low_complexity Low_complexity 1 38 0 275 176 0 132 chr3 188010849 188010940 -30026218 - L3 LINE CR1 -107 1470 1392 1050 186 11 0 chr3 188010983 188011166 -30025992 + MER5A DNA MER1_type 1 185 -4 304 362 43 9 chr3 188011178 188011294 -30025864 - MER5A DNA MER1_type 0 189 70 464 341 75 19 chr3 188011387 188011601 -30025557 - L3 LINE CR1 -437 1140 915 239 250 0 0 chr3 188011666 188011710 -30025448 - L2 LINE L2 -16 3256 3213 646 262 100 5 chr3 188011783 188011993 -30025165 + MIR SINE MIR 7 236 -26 232 265 44 0 chr3 188013720 188013788 -30023370 + MIR SINE MIR 102 172 -90 259 296 8 80 chr3 188013820 188013945 -30023213 + MIR SINE MIR 54 169 -93 244 318 0 0 chr3 188014395 188014461 -30022697 - MIR SINE MIR -110 152 87 678 25 0 0 chr3 188014532 188014612 -30022546 + (TGG)n Simple_repeat Simple_repeat 1 80 0 2541 230 68 7 chr3 188015500 188016516 -30020642 - L1ME LINE L1 -435 5731 4645 352 133 16 207 chr3 188016523 188016658 -30020500 - MSTB1 LTR MaLR -47 385 267 3238 178 67 5 chr3 188016658 188017331 -30019827 - MST-int LTR MaLR -936 715 1 1146 183 25 0 chr3 188017352 188017549 -30019609 - AluJo SINE Alu -110 202 1 285 344 22 33 chr3 188019487 188019577 -30017581 - L2 LINE L2 -181 3091 3003 200 267 0 67 chr3 188021489 188021549 -30015609 + MIR3 SINE MIR 123 178 -30 224 59 29 0 chr3 188021869 188021903 -30015255 + (TTG)n Simple_repeat Simple_repeat 2 36 0 328 283 68 129 chr3 188022093 188022372 -30014786 - L2 LINE L2 -9 3263 3002 1200 165 14 23 chr3 188023651 188023869 -30013289 + AluJo SINE Alu 87 302 -10 272 362 24 8 chr3 188024131 188024255 -30012903 + MIR SINE MIR 31 155 -65 2178 126 0 0 chr3 188024306 188024600 -30012558 + AluSx SINE Alu 1 294 -18 21 0 0 0 chr3 188024982 188025003 -30012155 + AT_rich Low_complexity Low_complexity 1 21 0 1786 140 3 0 chr3 188026356 188026642 -30010516 - L1MC1 LINE L1 0 6333 6047 1768 149 26 40 chr3 188026642 188026990 -30010168 + MER2 DNA MER2_type 2 344 0 537 336 88 4 chr3 188027533 188027759 -30009399 - MIR SINE MIR -13 249 5 350 248 133 39 chr3 188028384 188028607 -30008551 - MIR SINE MIR -22 240 1 493 196 26 143 chr3 188029905 188029978 -30007180 - MIR SINE MIR -1 261 181 2170 103 14 0 chr3 188029978 188030270 -30006888 - AluSg SINE Alu -14 296 1 493 196 26 143 chr3 188030270 188030385 -30006773 - MIR SINE MIR -81 181 95 288 130 0 0 chr3 188032427 188032473 -30004685 + (A)n Simple_repeat Simple_repeat 1 46 0 281 241 0 0 chr3 188032631 188032685 -30004473 + L2 LINE L2 3219 3272 0 38 0 0 0 chr3 188035937 188035975 -30001183 + AT_rich Low_complexity Low_complexity 1 38 0 239 276 86 67 chr3 188036159 188036264 -30000894 + L2 LINE L2 3184 3290 -23 8289 87 8 1 chr3 188037049 188038984 -29998174 - L1PA7 LINE L1 0 6154 4213 311 194 302 0 chr3 188039136 188039251 -29997907 - MER5A DNA MER1_type -29 160 4 229 196 20 20 chr3 188040968 188041019 -29996139 + L2 LINE L2 3221 3271 -1 2481 66 3 0 chr3 188041135 188041436 -29995722 - AluY SINE Alu -9 302 1 2484 81 3 0 chr3 188042039 188042349 -29994809 + AluY SINE Alu 1 311 0 2207 111 3 0 chr3 188042545 188042833 -29994325 - AluSx SINE Alu -22 290 2 957 127 0 0 chr3 188042842 188042976 -29994182 - AluSq/x SINE Alu -179 134 1 186 364 102 0 chr3 188043546 188043634 -29993524 + MIR SINE MIR 43 139 -69 239 269 77 48 chr3 188044459 188044563 -29992595 - MIR SINE MIR -11 251 145 2207 66 7 14 chr3 188045169 188045456 -29991702 + AluY SINE Alu 11 295 -16 263 279 38 0 chr3 188045666 188045745 -29991413 - L2 LINE L2 -16 3256 3175 248 185 62 14 chr3 188046119 188046190 -29990968 - Alu SINE Alu -202 100 52 29 28 0 0 chr3 188046235 188046271 -29990887 + AT_rich Low_complexity Low_complexity 1 36 0 371 298 35 35 chr3 188046673 188046814 -29990344 + MIR SINE MIR 49 189 -73 518 249 52 72 chr3 188046855 188047048 -29990110 - MIR SINE MIR -51 211 23 6598 181 83 16 chr3 188048328 188048371 -29988787 + L1 LINE L1 2157 2196 -3950 2056 145 13 7 chr3 188048371 188048681 -29988477 - AluSx SINE Alu 0 312 1 6598 181 83 16 chr3 188048681 188049405 -29987753 + L1 LINE L1 2196 2870 -3276 2419 100 0 0 chr3 188049405 188049715 -29987443 + AluY SINE Alu 1 310 -1 6598 181 83 16 chr3 188049715 188050611 -29986547 + L1 LINE L1 2870 3933 -2213 321 247 14 0 chr3 188050657 188050730 -29986428 - MIR SINE MIR 0 262 189 1317 241 170 29 chr3 188051172 188051915 -29985243 + L1ME2 LINE L1 5133 5991 -173 1956 163 34 0 chr3 188052104 188052430 -29984728 + MER1B DNA MER1_type 1 337 0 23 33 0 0 chr3 188053243 188053273 -29983885 + AT_rich Low_complexity Low_complexity 1 30 0 493 262 9 0 chr3 188054222 188054329 -29982829 + MIR SINE MIR 34 141 -67 180 0 0 0 chr3 188056313 188056333 -29980825 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1304 83 0 6 chr3 188056335 188056503 -29980655 - AluSc SINE Alu -11 298 132 2319 68 14 0 chr3 188056503 188056796 -29980362 - AluY SINE Alu -14 297 1 201 74 0 0 chr3 188057199 188057226 -29979932 + (CAA)n Simple_repeat Simple_repeat 1 27 0 948 261 156 90 chr3 188057370 188058563 -29978595 + HAL1 LINE L1 4 1275 -1232 571 251 211 11 chr3 188058577 188058927 -29978231 + HAL1 LINE L1 1320 1739 -768 252 218 18 0 chr3 188059286 188059341 -29977817 + L2 LINE L2 3250 3305 -8 373 327 19 0 chr3 188059464 188059623 -29977535 + Charlie8 DNA MER1_type 75 236 -2181 2070 259 126 11 chr3 188059731 188060524 -29976634 + L1M4 LINE L1 16 899 -5643 2099 113 20 0 chr3 188060661 188060953 -29976205 + AluSx SINE Alu 3 300 -12 298 231 19 37 chr3 188061323 188061431 -29975727 - MER113 DNA MER1_type? -409 112 7 330 299 156 19 chr3 188062643 188062854 -29974304 - MIR SINE MIR -20 242 3 235 146 0 0 chr3 188064034 188064075 -29973083 + MLT1E2 LTR MaLR 586 626 0 1883 142 3 44 chr3 188064307 188064624 -29972534 + AluJb SINE Alu 1 304 -8 413 332 118 49 chr3 188064706 188064840 -29972318 + L1MC/D LINE L1 5343 5466 -2342 2121 117 4 0 chr3 188064840 188065144 -29972014 + AluSq SINE Alu 1 305 0 413 332 118 49 chr3 188065144 188065433 -29971725 + L1MC/D LINE L1 5466 5796 -2012 1621 228 25 2 chr3 188065498 188065729 -29971429 + L1M4 LINE L1 4213 4437 -2207 234 0 0 0 chr3 188065729 188065755 -29971403 + (TA)n Simple_repeat Simple_repeat 1 26 0 1621 228 25 2 chr3 188065755 188065967 -29971191 + L1M4 LINE L1 4437 4666 -1978 295 229 43 0 chr3 188066027 188066097 -29971061 - MER52A LTR ERV1 -7 1748 1676 * 3413 202 88 68 chr3 188066084 188067213 -29969945 - MER52A LTR ERV1 -559 1196 46 2153 154 66 13 chr3 188067450 188067903 -29969255 + L1MB7 LINE L1 5692 6168 -16 1584 177 20 33 chr3 188068072 188068177 -29968981 + AluJb SINE Alu 1 106 -206 1959 131 52 35 chr3 188068177 188068544 -29968614 + THE1C LTR MaLR 3 375 0 1584 177 20 33 chr3 188068544 188068737 -29968421 + AluJb SINE Alu 106 295 -17 300 273 26 22 chr3 188068848 188068941 -29968217 + MIR3 SINE MIR 68 161 -47 301 220 0 0 chr3 188069285 188069344 -29967814 - MLT1H LTR MaLR 0 549 491 383 307 34 50 chr3 188070225 188070340 -29966818 - MIR SINE MIR -2 260 148 2332 81 3 3 chr3 188070340 188070637 -29966521 + AluY SINE Alu 1 297 -14 383 307 34 50 chr3 188070637 188070700 -29966458 - MIR SINE MIR -114 148 85 885 223 102 45 chr3 188070700 188071235 -29965923 + MLT1F LTR MaLR 1 528 -14 1994 124 14 0 chr3 188071963 188072253 -29964905 - AluSx SINE Alu -18 294 1 2224 87 0 0 chr3 188073386 188073688 -29963470 + AluY SINE Alu 7 308 0 10307 141 16 23 chr3 188074416 188076694 -29960464 + L1P3 LINE L1 10 2283 -4178 5542 90 9 0 chr3 188076693 188077504 -29959654 + L1P LINE L1 3546 4363 -1783 * 17948 44 1 1 chr3 188077508 188080533 -29956625 + L1PA4 LINE L1 3141 6151 -4 3064 43 3 0 chr3 188080562 188080936 -29956222 + L1PA4 LINE L1 5770 6144 -11 21 0 0 0 chr3 188080936 188080957 -29956201 + AT_rich Low_complexity Low_complexity 1 21 0 2754 76 0 0 chr3 188080958 188081369 -29955789 + L1PA8 LINE L1 5815 6225 0 368 280 50 0 chr3 188081381 188081481 -29955677 - ERVL LTR ERVL -764 5000 4896 930 240 0 0 chr3 188081489 188081664 -29955494 - MER5A DNA MER1_type -3 186 12 4636 138 16 6 chr3 188081681 188082478 -29954680 - L1MA7 LINE L1 -2 6289 5485 594 316 62 0 chr3 188082609 188082865 -29954293 + ERVL LTR ERVL 4486 4757 -1007 213 154 0 0 chr3 188082897 188082936 -29954222 + GA-rich Low_complexity Low_complexity 3 41 0 214 292 0 15 chr3 188083399 188083464 -29953694 + CT-rich Low_complexity Low_complexity 2 65 0 6890 222 47 52 chr3 188083656 188084146 -29953012 + L1ME3A LINE L1 2538 3029 -3117 800 106 0 0 chr3 188084146 188084250 -29952908 - AluSx SINE Alu -156 156 53 6890 222 47 52 chr3 188084250 188085561 -29951597 + L1ME3A LINE L1 3029 4345 -1801 2137 112 0 0 chr3 188085561 188085838 -29951320 + AluSg SINE Alu 1 277 -33 207 0 0 0 chr3 188085841 188085864 -29951294 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6890 222 47 52 chr3 188085864 188086317 -29950841 + L1ME3A LINE L1 4347 4889 -1257 256 228 50 20 chr3 188086354 188086455 -29950703 + L1ME3A LINE L1 5148 5251 -895 3015 275 85 9 chr3 188086461 188087771 -29949387 + L2 LINE L2 1893 3313 0 483 266 48 83 chr3 188087802 188088036 -29949122 + L1ME3A LINE L1 5493 5734 -436 554 230 156 15 chr3 188088036 188088171 -29948987 + FAM SINE Alu 4 157 -18 2355 91 0 0 chr3 188088171 188088469 -29948689 - AluSc SINE Alu -11 298 1 483 266 48 83 chr3 188088469 188088631 -29948527 + L1ME3A LINE L1 5732 5876 -294 21 36 0 0 chr3 188088681 188088709 -29948449 + AT_rich Low_complexity Low_complexity 1 28 0 233 323 0 11 chr3 188088712 188088805 -29948353 + (CATATA)n Simple_repeat Simple_repeat 5 96 0 5147 176 27 43 chr3 188088906 188089590 -29947568 + L1MA4 LINE L1 3957 4650 -1650 2022 132 0 3 chr3 188089590 188089877 -29947281 + AluSx SINE Alu 1 286 -26 5147 176 27 43 chr3 188089877 188090145 -29947013 + L1MA4 LINE L1 4650 4921 -1379 654 159 23 45 chr3 188090145 188090277 -29946881 + FLAM_A SINE Alu 12 140 -2 5147 176 27 43 chr3 188090277 188091652 -29945506 + L1MA4 LINE L1 4921 6299 -1 2504 155 19 26 chr3 188091724 188092188 -29944970 - LOR1b LTR ERV1 0 461 1 1631 128 0 4 chr3 188092515 188092742 -29944416 + AluSx SINE Alu 1 226 -86 217 239 0 0 chr3 188092865 188092911 -29944247 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 229 228 18 0 chr3 188093040 188093097 -29944061 - L1ME LINE L1 -375 5746 5689 728 172 8 8 chr3 188093175 188093309 -29943849 + AluJb SINE Alu 1 134 -178 311 301 44 37 chr3 188093343 188093479 -29943679 - L1ME LINE L1 -2249 5559 5423 310 273 127 24 chr3 188093535 188093684 -29943474 + MER5A DNA MER1_type 1 173 -15 428 237 67 15 chr3 188094506 188094641 -29942517 + MIR SINE MIR 105 246 -16 842 48 0 0 chr3 188094663 188094766 -29942392 + AluY SINE Alu 207 309 -2 2040 113 43 0 chr3 188095510 188095792 -29941366 + AluSq SINE Alu 1 294 -19 1783 102 0 0 chr3 188096175 188096461 -29940697 + L1PA13 LINE L1 5908 6193 0 372 309 140 0 chr3 188096462 188096640 -29940518 + MIR SINE MIR 1 203 -59 1278 96 0 21 chr3 188097117 188097304 -29939854 + L1PB1 LINE L1 5967 6149 -2 537 141 0 12 chr3 188097696 188097781 -29939377 - AluS SINE Alu -228 84 1 248 191 0 0 chr3 188097783 188097825 -29939333 - MER20B DNA MER1_type -627 156 115 32 43 0 0 chr3 188097993 188098039 -29939119 + AT_rich Low_complexity Low_complexity 1 46 0 1594 159 3 79 chr3 188098357 188098672 -29938486 - AluSx SINE Alu -17 295 5 321 313 54 12 chr3 188098677 188098843 -29938315 - L1M4 LINE L1 -3090 3292 3120 2315 97 0 10 chr3 188098848 188099156 -29938002 + AluSg SINE Alu 6 310 0 264 307 42 6 chr3 188099210 188099376 -29937782 - L1M4 LINE L1 -3296 3086 2915 389 273 50 11 chr3 188099483 188099768 -29937390 - L1M4 LINE L1 -3794 2588 2290 1363 208 48 41 chr3 188099795 188100088 -29937070 - AluJb SINE Alu -17 295 1 21 57 0 0 chr3 188100362 188100397 -29936761 + AT_rich Low_complexity Low_complexity 1 35 0 1047 95 0 0 chr3 188101769 188101917 -29935241 - L1PA8 LINE L1 0 6172 6025 1990 113 65 10 chr3 188101930 188102221 -29934937 - AluSx SINE Alu -5 307 1 1325 59 0 0 chr3 188102685 188102855 -29934303 - AluY SINE Alu -4 307 138 428 282 103 0 chr3 188102992 188103148 -29934010 - MLT1L LTR MaLR -89 526 355 764 280 9 30 chr3 188103208 188103440 -29933718 - MLT1L LTR MaLR -386 229 3 2430 69 0 3 chr3 188103495 188103801 -29933357 + AluY SINE Alu 1 305 -6 246 285 229 11 chr3 188104045 188104224 -29932934 - MLT1L LTR MaLR -4 611 394 293 264 77 0 chr3 188104310 188104401 -29932757 - MLT1L LTR MaLR -348 267 170 307 233 0 0 chr3 188104529 188104589 -29932569 + MER58A DNA MER1_type 30 89 -18 390 331 107 0 chr3 188104593 188104771 -29932387 - L2 LINE L2 -573 2741 2545 207 0 0 0 chr3 188105020 188105043 -29932115 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1041 39 0 0 chr3 188105063 188105193 -29931965 - L1PA4 LINE L1 0 6155 6026 2731 35 3 0 chr3 188105193 188105536 -29931622 + L1PA4 LINE L1 5701 6044 -111 1788 152 42 64 chr3 188105536 188106094 -29931064 + MLT2A2 LTR ERVL 3 553 -1 25 0 0 0 chr3 188106856 188106881 -29930277 + AT_rich Low_complexity Low_complexity 1 25 0 3254 155 10 13 chr3 188107480 188108080 -29929078 + L1MB3 LINE L1 5283 5880 -303 228 261 11 68 chr3 188108255 188108343 -29928815 - L2 LINE L2 -8 3305 3223 430 301 126 53 chr3 188108401 188108816 -29928342 - L2 LINE L2 -193 3079 2628 825 325 142 63 chr3 188108816 188109312 -29927846 - L2 LINE L2 -798 2516 2061 2249 95 0 20 chr3 188109312 188109618 -29927540 + AluY SINE Alu 1 300 -11 825 325 142 63 chr3 188109618 188110599 -29926559 - L2 LINE L2 -1253 2061 945 242 208 25 92 chr3 188110781 188110901 -29926257 + HAL1 LINE L1 909 1020 -1487 229 228 140 0 chr3 188110909 188111045 -29926113 + HAL1 LINE L1 1285 1439 -1068 5307 273 86 20 chr3 188111045 188112897 -29924261 + L2 LINE L2 954 2927 -387 1441 260 72 63 chr3 188112905 188113544 -29923614 - MLT2F LTR ERVL -18 645 1 849 280 154 34 chr3 188113544 188113894 -29923264 + L2 LINE L2 2922 3313 0 1260 282 117 35 chr3 188113896 188114039 -29923119 + HAL1 LINE L1 1436 1566 -941 1567 183 29 66 chr3 188114039 188114095 -29923063 + MLT1A1 LTR MaLR 1 58 -307 2324 82 3 0 chr3 188114095 188114387 -29922771 - AluY SINE Alu -18 293 1 1567 183 29 66 chr3 188114387 188114707 -29922451 + MLT1A1 LTR MaLR 58 363 -2 1260 282 117 35 chr3 188114707 188115269 -29921889 + HAL1 LINE L1 1566 2214 -293 336 48 0 0 chr3 188115269 188115311 -29921847 + (TG)n Simple_repeat Simple_repeat 2 43 0 1260 282 117 35 chr3 188115311 188115392 -29921766 + HAL1 LINE L1 2214 2287 -220 1750 176 0 10 chr3 188115803 188116092 -29921066 + AluJo SINE Alu 3 288 -24 26 30 0 0 chr3 188116419 188116452 -29920706 + AT_rich Low_complexity Low_complexity 1 33 0 387 269 85 88 chr3 188116711 188116994 -29920164 + MLT1J LTR MaLR 230 511 0 1416 245 25 34 chr3 188117180 188117941 -29919217 + L1MC4a LINE L1 4888 5642 -749 27 0 0 0 chr3 188118089 188118116 -29919042 + AT_rich Low_complexity Low_complexity 1 27 0 598 239 190 118 chr3 188118129 188118390 -29918768 + L1MC4a LINE L1 5665 5906 -1902 270 0 0 0 chr3 188118390 188118420 -29918738 + (CA)n Simple_repeat Simple_repeat 1 30 0 598 239 190 118 chr3 188118420 188118878 -29918280 + L1MC4a LINE L1 5906 6436 -1372 447 201 164 37 chr3 188118993 188119123 -29918035 - L1MC4 LINE L1 -2 8040 7928 333 0 0 0 chr3 188119123 188119160 -29917998 + (CA)n Simple_repeat Simple_repeat 2 38 0 447 201 164 37 chr3 188119160 188119243 -29917915 - L1MC4 LINE L1 -114 7928 7800 823 184 60 18 chr3 188119295 188119512 -29917646 - L1MC4 LINE L1 -395 7647 7422 200 238 0 0 chr3 188119623 188119665 -29917493 + (TA)n Simple_repeat Simple_repeat 1 42 0 369 258 123 32 chr3 188119670 188119825 -29917333 + L1MC4 LINE L1 5644 5812 -1996 995 292 25 22 chr3 188119827 188120234 -29916924 + L1MC4 LINE L1 6661 7068 -974 244 335 127 30 chr3 188120342 188120578 -29916580 + L2 LINE L2 3004 3262 -51 1501 109 0 19 chr3 188121078 188121289 -29915869 + AluSg SINE Alu 1 207 -103 604 40 0 0 chr3 188121330 188121466 -29915692 + AluSg SINE Alu 204 339 0 203 286 14 14 chr3 188122212 188122282 -29914876 - MIR SINE MIR -127 135 66 205 274 82 0 chr3 188122570 188122643 -29914515 + MIR SINE MIR 43 121 -87 242 260 27 0 chr3 188123164 188123237 -29913921 + CT-rich Low_complexity Low_complexity 2 76 0 349 264 108 81 chr3 188123246 188123504 -29913654 + L1M2a LINE L1 663 927 -6241 204 231 16 8 chr3 188124363 188124484 -29912674 + CT-rich Low_complexity Low_complexity 1 122 0 387 289 5 107 chr3 188125790 188125987 -29911171 - MER5B DNA MER1_type 0 178 2 1071 143 27 9 chr3 188127104 188127327 -29909831 - Charlie5 DNA MER1_type -142 2470 2244 428 132 0 0 chr3 188127347 188127415 -29909743 - Charlie5 DNA MER1_type -2507 105 38 198 330 148 0 chr3 188128998 188129086 -29908072 - L2 LINE L2 -19 3294 3194 1535 95 0 9 chr3 188130752 188130962 -29906196 + AluSg/x SINE Alu 103 310 0 1950 112 0 0 chr3 188131458 188131718 -29905440 + AluY SINE Alu 40 299 -12 290 309 138 0 chr3 188132604 188132814 -29904344 + L1ME4a LINE L1 5545 5783 -338 213 395 32 26 chr3 188132837 188133027 -29904131 - MIR SINE MIR -39 223 33 300 210 153 24 chr3 188133192 188133316 -29903842 + L1ME4a LINE L1 5961 6100 -21 243 264 161 11 chr3 188133573 188133660 -29903498 + MIR SINE MIR 12 111 -151 183 212 0 0 chr3 188133671 188133704 -29903454 + L2 LINE L2 3222 3254 -18 539 293 53 49 chr3 188134246 188134471 -29902687 + MIR SINE MIR 24 249 -13 1925 108 69 11 chr3 188134761 188135038 -29902120 - AluSp SINE Alu -20 293 1 2215 98 3 0 chr3 188135929 188136215 -29900943 + AluSx SINE Alu 1 287 -25 1899 110 8 8 chr3 188136987 188137241 -29899917 + AluSx SINE Alu 26 279 -33 255 31 0 0 chr3 188137244 188137276 -29899882 + (GAA)n Simple_repeat Simple_repeat 2 33 0 2160 155 43 32 chr3 188137304 188137473 -29899685 + MSTB2 LTR MaLR 15 181 -276 2060 123 45 36 chr3 188137473 188137832 -29899326 + THE1B LTR MaLR 1 362 -2 11876 92 2 7 chr3 188137834 188139421 -29897737 + THE1B-int LTR MaLR 1 1580 0 1980 117 59 42 chr3 188139421 188139779 -29897379 + THE1B LTR MaLR 1 364 0 2160 155 43 32 chr3 188139779 188140043 -29897115 + MSTB2 LTR MaLR 180 457 0 2392 94 0 13 chr3 188140241 188140550 -29896608 + AluY SINE Alu 1 305 -6 864 204 65 56 chr3 188140556 188140834 -29896324 - MER114 LTR ERV -2 646 372 2242 104 7 13 chr3 188140834 188141141 -29896017 - AluY SINE Alu -6 305 1 864 204 65 56 chr3 188141141 188141369 -29895789 - MER114 LTR ERV -276 372 89 27 29 0 0 chr3 188141559 188141593 -29895565 + AT_rich Low_complexity Low_complexity 1 34 0 227 365 19 6 chr3 188142089 188142245 -29894913 + L2 LINE L2 736 893 -2421 1451 170 42 14 chr3 188142275 188142563 -29894595 - MLT1A1 LTR MaLR -69 296 1 356 315 145 40 chr3 188142569 188142955 -29894203 + L2 LINE L2 1294 1745 -1569 1638 203 21 27 chr3 188142955 188143329 -29893829 + MLT1A2 LTR MaLR 3 374 0 356 315 145 40 chr3 188143329 188143440 -29893718 + L2 LINE L2 1745 1843 -1471 490 329 45 31 chr3 188143646 188144073 -29893085 - L2 LINE L2 -199 3073 2638 26 0 0 0 chr3 188146302 188146328 -29890830 + AT_rich Low_complexity Low_complexity 1 26 0 286 287 46 46 chr3 188147847 188147934 -29889224 - L2 LINE L2 -54 3259 3173 300 158 0 0 chr3 188148033 188148090 -29889068 + (CA)n Simple_repeat Simple_repeat 1 57 0 326 301 40 28 chr3 188148111 188148287 -29888871 - L1ME4a LINE L1 -226 5895 5718 4274 153 18 5 chr3 188148387 188148570 -29888588 + L1MA8 LINE L1 5058 5237 -1054 2588 106 22 3 chr3 188148570 188148938 -29888220 - THE1C LTR MaLR 0 375 1 4274 153 18 5 chr3 188148938 188149746 -29887412 + L1MA8 LINE L1 5237 6056 -235 452 164 69 35 chr3 188149742 188149858 -29887300 + L1MA7 LINE L1 6159 6278 -13 * 261 333 9 19 chr3 188150033 188150138 -29887020 - MIR3 SINE MIR -100 108 5 1270 251 50 4 chr3 188150195 188150670 -29886488 + L1M4 LINE L1 2782 3278 -2868 2717 136 17 10 chr3 188151834 188152313 -29884845 + L1PA16 LINE L1 5566 6047 -119 * 8195 124 15 60 chr3 188152304 188153542 -29883616 + L1MA3 LINE L1 3632 4924 -1381 722 58 0 0 chr3 188153542 188153629 -29883529 - AluY SINE Alu -21 290 204 8195 124 15 60 chr3 188153629 188154126 -29883032 + L1MA3 LINE L1 4924 5442 -863 2536 69 0 0 chr3 188154126 188154431 -29882727 + AluY SINE Alu 1 305 -6 8195 124 15 60 chr3 188154431 188155406 -29881752 + L1MA3 LINE L1 5442 6298 -7 707 122 114 0 chr3 188155419 188155542 -29881616 + L1PA16 LINE L1 6023 6159 -7 284 224 26 0 chr3 188156307 188156383 -29880775 - MER58 DNA MER1_type -93 122 45 218 280 53 0 chr3 188156428 188156503 -29880655 + L2 LINE L2 3194 3272 0 295 207 0 12 chr3 188157716 188157792 -29879366 - MIR SINE MIR -71 137 64 1213 78 7 0 chr3 188159192 188159396 -29877762 + AluSg/x SINE Alu 133 337 0 1805 154 3 3 chr3 188160392 188160680 -29876478 + AluJo SINE Alu 1 315 0 244 0 0 0 chr3 188160680 188160707 -29876451 + (CAA)n Simple_repeat Simple_repeat 2 180 0 2103 108 7 3 chr3 188161274 188161570 -29875588 - AluSx SINE Alu -15 297 1 257 248 240 16 chr3 188163252 188163381 -29873777 - MIR3 SINE MIR -50 158 1 232 267 11 44 chr3 188163574 188163664 -29873494 + GA-rich Low_complexity Low_complexity 1 87 0 208 289 0 0 chr3 188163988 188164033 -29873125 + (CACG)n Simple_repeat Simple_repeat 2 46 0 2350 59 3 39 chr3 188164764 188165071 -29872087 - AluY SINE Alu -10 301 6 26 30 0 0 chr3 188168684 188168717 -29868441 + AT_rich Low_complexity Low_complexity 1 33 0 905 145 26 13 chr3 188169406 188169558 -29867600 - FRAM SINE Alu -30 146 1 350 261 78 21 chr3 188170654 188170796 -29866362 - MIR SINE MIR -75 187 38 671 232 103 41 chr3 188171351 188171718 -29865440 + L1MC5 LINE L1 7187 7576 -385 277 221 0 15 chr3 188171814 188171882 -29865276 + L1MC5 LINE L1 7734 7800 -161 378 282 17 58 chr3 188172033 188172088 -29865070 + Charlie8 DNA MER1_type 115 171 -2246 2154 120 3 3 chr3 188172088 188172387 -29864771 - AluSx SINE Alu -13 299 1 378 282 17 58 chr3 188172387 188172505 -29864653 + Charlie8 DNA MER1_type 171 281 -2136 343 271 23 0 chr3 188173891 188174020 -29863138 + (TA)n Simple_repeat Simple_repeat 2 133 0 246 116 0 0 chr3 188174053 188174082 -29863076 + (CA)n Simple_repeat Simple_repeat 1 72 0 246 116 0 0 chr3 188174082 188174125 -29863033 + (CA)n Simple_repeat Simple_repeat 1 43 0 1606 186 25 4 chr3 188175112 188175416 -29861742 - AluJb SINE Alu 0 311 2 383 282 19 10 chr3 188175845 188175948 -29861210 - MIR SINE MIR -96 166 63 270 329 55 41 chr3 188177094 188177240 -29859918 - MIR3 SINE MIR -58 150 3 21 71 0 0 chr3 188177432 188177474 -29859684 + AT_rich Low_complexity Low_complexity 1 42 0 269 217 33 0 chr3 188178537 188178597 -29858561 + (TAAA)n Simple_repeat Simple_repeat 3 64 0 582 221 0 0 chr3 188178880 188179002 -29858156 + L1MC4 LINE L1 7550 7671 -371 2209 93 11 0 chr3 188179862 188180167 -29856991 - AluSx SINE Alu 0 308 1 327 293 73 12 chr3 188180964 188181083 -29856075 + L1MC4 LINE L1 7758 7891 -151 2430 51 0 3 chr3 188181083 188181375 -29855783 + AluY SINE Alu 1 291 -20 327 293 73 12 chr3 188181375 188181419 -29855739 + L1MC4 LINE L1 7891 7931 -111 226 273 20 40 chr3 188181453 188181552 -29855606 + L1MC3 LINE L1 7675 7771 -14 531 314 82 22 chr3 188181561 188181880 -29855278 + MER102b DNA MER1_type 4 341 0 722 185 219 54 chr3 188181917 188182122 -29855036 + MER8 DNA MER2_type 1 239 0 194 351 130 0 chr3 188182233 188182418 -29854740 - L2 LINE L2 -543 2771 2563 380 357 34 31 chr3 188184953 188185247 -29851911 + L2 LINE L2 2478 2772 -542 558 306 96 38 chr3 188186551 188186946 -29850212 - L2 LINE L2 -555 2759 2342 237 294 143 74 chr3 188187116 188187347 -29849811 - L2 LINE L2 -50 3222 2976 240 330 103 43 chr3 188187383 188187616 -29849542 + L2 LINE L2 2974 3220 -93 1991 124 52 3 chr3 188189074 188189364 -29847794 + AluSx SINE Alu 2 305 -7 909 201 18 0 chr3 188190613 188190777 -29846381 + FAM SINE Alu 1 167 -8 236 203 14 0 chr3 188192687 188192756 -29844402 + (TA)n Simple_repeat Simple_repeat 1 70 0 2026 96 11 7 chr3 188194130 188194442 -29842716 + AluY SINE Alu 1 313 0 2308 79 34 0 chr3 188194829 188195120 -29842038 - AluSc SINE Alu -8 301 1 1138 192 173 4 chr3 188195219 188195521 -29841637 + AluJo SINE Alu 2 346 0 2173 113 6 6 chr3 188196233 188196544 -29840614 - AluSq SINE Alu -2 311 1 22 56 0 0 chr3 188197042 188197078 -29840080 + AT_rich Low_complexity Low_complexity 1 36 0 21 82 0 0 chr3 188197640 188197689 -29839469 + AT_rich Low_complexity Low_complexity 1 49 0 2335 96 3 0 chr3 188198427 188198728 -29838430 + AluSp SINE Alu 7 308 -5 194 268 0 0 chr3 188199006 188199047 -29838111 - L2 LINE L2 -8 3305 3265 1027 69 8 0 chr3 188199519 188199649 -29837509 + AluSg SINE Alu 1 131 -179 21 43 0 0 chr3 188199649 188199672 -29837486 + AT_rich Low_complexity Low_complexity 1 23 0 386 137 41 0 chr3 188200373 188200446 -29836712 - L1M4 LINE L1 -699 5475 5400 644 186 48 37 chr3 188200535 188200733 -29836425 - MER6 DNA MER2_type 0 865 -65 1698 108 17 0 chr3 188200740 188201035 -29836123 - L1P LINE L1 -3549 2597 2298 * 3617 201 46 6 chr3 188201033 188201748 -29835410 - L1PA13 LINE L1 -5842 945 202 312 87 0 0 chr3 188201753 188201799 -29835359 - Tigger5 DNA MER2_type -176 2147 2102 * 363 254 54 39 chr3 188201794 188201924 -29835234 - Tigger5 DNA MER2_type -2185 138 7 499 279 39 41 chr3 188201989 188202511 -29834647 - L1ME LINE L1 -5162 908 527 594 269 3 90 chr3 188202636 188202937 -29834221 - L1ME LINE L1 -5539 531 257 443 60 75 0 chr3 188202970 188203037 -29834121 - L1PA11 LINE L1 -2 6172 6101 513 292 13 33 chr3 188203047 188203310 -29833848 - L1ME LINE L1 -5807 263 3 2470 64 3 0 chr3 188203326 188203624 -29833534 - AluY SINE Alu -12 299 1 1106 69 0 0 chr3 188203627 188203758 -29833400 - AluSp SINE Alu -182 131 1 513 269 132 0 chr3 188203782 188203979 -29833179 - MIR SINE MIR -28 234 12 28 0 0 0 chr3 188204263 188204291 -29832867 + AT_rich Low_complexity Low_complexity 1 28 0 787 227 193 52 chr3 188204302 188204690 -29832468 - LTR16A1 LTR ERVL -11 446 4 213 178 0 0 chr3 188204874 188204919 -29832239 + CT-rich Low_complexity Low_complexity 1 45 0 1566 354 64 22 chr3 188204963 188206396 -29830762 - ERVL LTR ERVL -504 5260 3768 2601 144 22 2 chr3 188206896 188207312 -29829846 - MSTB LTR MaLR -2 424 1 240 311 13 46 chr3 188207316 188207467 -29829691 + LTR67 LTR ERVL 412 557 0 201 223 32 11 chr3 188207983 188208077 -29829081 + CT-rich Low_complexity Low_complexity 1 96 0 227 255 59 72 chr3 188208092 188208245 -29828913 - L1ME4a LINE L1 -12 6109 5959 213 128 64 0 chr3 188208295 188208342 -29828816 + (TA)n Simple_repeat Simple_repeat 2 51 0 292 287 28 9 chr3 188208580 188208688 -29828470 - L1ME4a LINE L1 -490 5631 5522 2061 117 11 0 chr3 188209115 188209420 -29827738 + AluSx SINE Alu 1 308 0 782 225 37 5 chr3 188209783 188210001 -29827157 + L1ME LINE L1 5540 5764 -357 2359 82 3 0 chr3 188210209 188210501 -29826657 - AluY SINE Alu -18 293 1 2275 125 0 0 chr3 188210759 188211070 -29826088 + AluSq SINE Alu 1 311 -2 909 233 39 0 chr3 188212052 188212258 -29824900 + MIR SINE MIR 23 236 -26 2258 118 3 3 chr3 188212515 188212820 -29824338 - AluSx SINE Alu -7 305 1 491 160 66 47 chr3 188213326 188213432 -29823726 + ORSL DNA AcHobo 1 108 -167 2253 113 0 25 chr3 188213613 188213932 -29823226 - AluSx SINE Alu -1 311 1 1320 135 4 41 chr3 188213951 188214196 -29822962 - AluSx SINE Alu -16 296 61 5910 144 36 6 chr3 188214739 188215727 -29821431 + Tigger1 DNA MER2_type 1401 2418 0 1557 138 17 0 chr3 188217219 188217459 -29819699 + AluY SINE Alu 60 303 -8 935 235 35 45 chr3 188217462 188217751 -29819407 + MLT1C LTR MaLR 177 462 -5 22 0 0 0 chr3 188217942 188217964 -29819194 + AT_rich Low_complexity Low_complexity 1 22 0 226 333 172 18 chr3 188218475 188218748 -29818410 - L2 LINE L2 -1210 2104 1790 2124 100 3 7 chr3 188219049 188219338 -29817820 + AluSc SINE Alu 1 288 -21 329 286 0 0 chr3 188220426 188220503 -29816655 - MER63 DNA MER1_type 0 1062 986 2866 79 16 0 chr3 188220503 188220881 -29816277 + MER41A LTR ERV1 1 384 -170 261 0 0 0 chr3 188221407 188221436 -29815722 + (T)n Simple_repeat Simple_repeat 1 29 0 361 269 76 0 chr3 188221582 188221701 -29815457 - MIR SINE MIR -133 129 2 2733 177 39 4 chr3 188221712 188222204 -29814954 + LTR22 LTR ERVK 1 509 0 400 153 94 24 chr3 188222456 188222541 -29814617 + LTR9 LTR ERV1 1 91 -521 6668 65 34 26 chr3 188222549 188223667 -29813491 - L1PA6 LINE L1 0 6154 5020 367 327 2 17 chr3 188223701 188224046 -29813112 + C-rich Low_complexity Low_complexity 1 339 0 3278 175 107 45 chr3 188224925 188225101 -29812057 - L1M4c LINE L1 -5388 996 832 2099 158 19 27 chr3 188225101 188225468 -29811690 + THE1B LTR MaLR 1 364 0 3278 175 107 45 chr3 188225468 188226069 -29811089 - L1M4c LINE L1 -5552 832 171 1786 137 58 71 chr3 188226073 188226453 -29810705 + THE1C LTR MaLR 1 375 0 196 336 103 9 chr3 188226554 188226670 -29810488 - MIR3 SINE MIR -67 141 15 255 61 0 0 chr3 188227251 188227284 -29809874 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 742 306 174 33 chr3 188228149 188228270 -29808888 - MLT1K LTR MaLR -31 557 454 1849 144 41 14 chr3 188228270 188228561 -29808597 + AluSx SINE Alu 1 299 -13 742 306 174 33 chr3 188228561 188228926 -29808232 - MLT1K LTR MaLR -134 454 2 555 189 0 27 chr3 188229528 188229540 -29807618 - FLAM_A SINE Alu -169 142 131 2316 93 7 10 chr3 188229540 188229850 -29807308 - AluSp SINE Alu -4 309 1 555 189 0 27 chr3 188229850 188229948 -29807210 - FLAM_A SINE Alu -180 131 35 188 271 78 12 chr3 188230025 188230105 -29807053 - MIR SINE MIR -96 112 34 961 159 103 52 chr3 188230993 188231245 -29805913 + ORSL DNA AcHobo 10 274 -1 2283 97 0 3 chr3 188231340 188231628 -29805530 - AluSg SINE Alu -15 295 9 251 327 19 19 chr3 188231650 188231754 -29805404 + MER5A DNA MER1_type 82 185 -4 309 51 0 0 chr3 188232617 188232656 -29804502 + (CA)n Simple_repeat Simple_repeat 1 39 0 2284 106 0 6 chr3 188233053 188233365 -29803793 + AluSx SINE Alu 1 310 -2 339 241 186 28 chr3 188233550 188233876 -29803282 + L1MC1 LINE L1 5415 5799 -371 23 33 0 0 chr3 188234097 188234127 -29803031 + AT_rich Low_complexity Low_complexity 1 30 0 330 115 0 0 chr3 188234262 188234314 -29802844 + (A)n Simple_repeat Simple_repeat 1 52 0 4775 192 14 18 chr3 188234640 188235527 -29801631 + L1PA12 LINE L1 19 901 -6680 1862 139 11 0 chr3 188235596 188235869 -29801289 + AluSx SINE Alu 1 276 -36 255 202 106 67 chr3 188235869 188235964 -29801194 - U3 snRNA snRNA -6 211 110 2881 184 24 32 chr3 188236313 188236613 -29800545 - L1MCa LINE L1 -5821 605 311 2565 116 8 3 chr3 188236613 188236975 -29800183 - THE1B LTR MaLR 0 364 1 2881 184 24 32 chr3 188236975 188237267 -29799891 - L1MCa LINE L1 -6115 311 18 245 245 208 0 chr3 188237278 188237417 -29799741 - MIR SINE MIR -56 206 38 27 0 0 0 chr3 188239267 188239294 -29797864 + GC_rich Low_complexity Low_complexity 1 27 0 6816 135 95 11 chr3 188239703 188240827 -29796331 - THE1C-int LTR MaLR -358 1222 4 675 168 109 10 chr3 188240829 188241033 -29796125 - THE1C LTR MaLR 0 375 146 22 35 0 0 chr3 188241323 188241352 -29795806 + GC_rich Low_complexity Low_complexity 1 29 0 596 200 23 8 chr3 188242294 188242424 -29794734 - MER94 DNA DNA -1 133 2 553 214 36 0 chr3 188242906 188243018 -29794140 + L1MC1 LINE L1 5976 6091 -242 500 198 30 33 chr3 188244313 188244485 -29792673 + HUERS-P3 LTR ERV1 2075 4125 -3691 1399 187 16 7 chr3 188244759 188245027 -29792131 + HUERS-P3 LTR ERV1 6851 8919 0 1439 254 78 34 chr3 188245033 188245599 -29791559 + LTR9B LTR ERV1 7 597 -47 251 288 38 0 chr3 188245910 188245990 -29791168 + MIR SINE MIR 97 179 -83 1394 112 0 0 chr3 188246077 188246264 -29790894 - AluSg/x SINE Alu -6 306 120 219 156 67 0 chr3 188246287 188246332 -29790826 + C-rich Low_complexity Low_complexity 2 49 0 25 90 0 0 chr3 188246468 188246535 -29790623 + GC_rich Low_complexity Low_complexity 1 67 0 25 65 0 0 chr3 188246575 188246621 -29790537 + GC_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr3 188246703 188246732 -29790426 + GC_rich Low_complexity Low_complexity 1 29 0 549 163 7 113 chr3 188248333 188248418 -29788740 + MER94 DNA DNA 4 70 -64 1757 186 14 3 chr3 188248418 188248713 -29788445 - AluJb SINE Alu -14 298 1 549 163 7 113 chr3 188248713 188248768 -29788390 + MER94 DNA DNA 70 129 -5 240 321 46 9 chr3 188249041 188249150 -29788008 + L2 LINE L2 2943 3055 -217 2241 98 3 16 chr3 188250020 188250326 -29786832 + AluSc SINE Alu 1 302 -7 2027 215 12 46 chr3 188250329 188250844 -29786314 + HUERS-P3 LTR ERV1 6533 6961 -457 525 156 24 127 chr3 188250824 188250888 -29786270 + HUERS-P3 LTR ERV1 2383 2452 -2563 * 1938 120 33 7 chr3 188250888 188251203 -29785955 + AluSx SINE Alu 1 322 0 621 115 29 0 chr3 188251211 188251315 -29785843 + L1PA6 LINE L1 6048 6154 0 525 156 24 127 chr3 188251315 188251452 -29785706 + HUERS-P3 LTR ERV1 2459 2572 -2443 1399 187 16 7 chr3 188251738 188252006 -29785152 + HUERS-P3 LTR ERV1 6851 8919 0 3155 179 45 24 chr3 188252012 188252637 -29784521 + LTR9B LTR ERV1 7 644 0 218 293 17 0 chr3 188253432 188253490 -29783668 - MIR SINE MIR -140 122 64 2209 51 51 0 chr3 188253508 188253781 -29783377 + AluY SINE Alu 1 287 -24 1491 159 4 34 chr3 188253798 188254062 -29783096 + AluJb SINE Alu 42 297 -15 210 274 137 0 chr3 188254496 188254591 -29782567 + L2 LINE L2 3206 3313 0 2317 96 0 10 chr3 188255068 188255381 -29781777 + AluY SINE Alu 1 310 -1 249 167 21 0 chr3 188255383 188255431 -29781727 - MER5B DNA MER1_type -129 49 1 488 279 48 18 chr3 188255824 188255989 -29781169 + L1ME LINE L1 5528 5697 -424 2365 88 7 7 chr3 188256155 188256462 -29780696 + AluSx SINE Alu 1 307 -5 318 174 0 0 chr3 188256783 188256827 -29780331 + AluJb SINE Alu 4 47 -256 818 169 0 66 chr3 188256827 188256918 -29780240 - LTR32 LTR ERVL 0 471 394 2257 110 0 19 chr3 188256918 188257236 -29779922 - AluSx SINE Alu 0 312 1 818 169 0 66 chr3 188257236 188257310 -29779848 - LTR32 LTR ERVL -77 394 317 1805 186 44 0 chr3 188257365 188257683 -29779475 - LTR32 LTR ERVL -119 352 21 506 103 0 124 chr3 188257684 188257781 -29779377 + AluJb SINE Alu 43 127 -185 428 133 0 0 chr3 188258163 188258223 -29778935 - AluJ/FLAM SINE Alu -247 65 6 411 137 144 60 chr3 188258932 188259072 -29778086 + MER5A DNA MER1_type 1 189 0 2328 107 0 3 chr3 188259420 188259729 -29777429 - AluSq SINE Alu -5 308 1 309 51 0 0 chr3 188260126 188260165 -29776993 + (TG)n Simple_repeat Simple_repeat 1 39 0 245 248 234 0 chr3 188261046 188261183 -29775975 + L1ME4a LINE L1 5953 6121 0 212 370 63 8 chr3 188261458 188261585 -29775573 + MIR SINE MIR 38 171 -91 289 258 110 7 chr3 188261797 188261950 -29775208 - MIR SINE MIR -64 144 25 2254 100 0 7 chr3 188262628 188262918 -29774240 + AluSg SINE Alu 1 288 -22 963 223 64 43 chr3 188263474 188263756 -29773402 + L1MA9 LINE L1 5987 6274 -38 44 46 0 0 chr3 188263758 188263823 -29773335 + AT_rich Low_complexity Low_complexity 1 65 0 2399 85 6 22 chr3 188263831 188264149 -29773009 + AluSq SINE Alu 1 313 0 233 309 0 91 chr3 188264470 188264547 -29772611 + MIR SINE MIR 14 80 -182 2128 193 66 53 chr3 188264547 188265060 -29772098 + MLT2B1 LTR ERVL 1 520 0 233 309 0 91 chr3 188265060 188265092 -29772066 + MIR SINE MIR 80 113 -149 245 245 208 0 chr3 188266168 188266307 -29770851 + MIR SINE MIR 38 206 -56 7022 161 22 16 chr3 188266318 188266610 -29770548 + L1MCa LINE L1 18 307 -6119 2565 116 8 3 chr3 188266610 188266972 -29770186 + THE1B LTR MaLR 1 364 0 7022 161 22 16 chr3 188266972 188267935 -29769223 + L1MCa LINE L1 307 1281 -5145 724 231 13 5 chr3 188267928 188268121 -29769037 + L1MCa LINE L1 2473 2667 -3759 * 278 167 0 0 chr3 188268143 188268191 -29768967 - L1M4 LINE L1 -2403 3743 3696 2483 65 0 16 chr3 188268191 188268499 -29768659 - AluY SINE Alu -8 303 1 3132 146 22 20 chr3 188268499 188269007 -29768151 - HSMAR2 DNA Mariner -223 1079 571 7079 173 95 76 chr3 188269014 188270662 -29766496 - MER52A LTR ERV1 -19 1736 58 3631 134 11 7 chr3 188271271 188271831 -29765327 - HSMAR2 DNA Mariner -739 563 2 3830 142 9 20 chr3 188271832 188272266 -29764892 - Ricksha DNA DNA -916 2330 1904 2412 88 0 0 chr3 188272266 188272571 -29764587 - AluY SINE Alu -6 305 1 3830 142 9 20 chr3 188272571 188272769 -29764389 - Ricksha DNA DNA -1342 1904 1705 343 161 92 35 chr3 188272748 188272835 -29764323 - Ricksha DNA DNA -3146 100 9 * 469 309 79 17 chr3 188272915 188273071 -29764087 + LTR33 LTR ERVL 4 149 -372 2425 123 47 33 chr3 188273071 188273294 -29763864 - MSTA LTR MaLR 0 428 195 2288 114 0 0 chr3 188273294 188273591 -29763567 - AluSx SINE Alu -15 297 1 2425 123 47 33 chr3 188273591 188273789 -29763369 - MSTA LTR MaLR -233 195 1 469 309 79 17 chr3 188273789 188274082 -29763076 + LTR33 LTR ERVL 149 520 -1 1853 155 7 23 chr3 188274150 188274460 -29762698 + AluSx SINE Alu 1 305 -7 313 271 33 60 chr3 188274621 188274772 -29762386 - MER5A DNA MER1_type 0 189 43 * 671 156 15 52 chr3 188274638 188274773 -29762385 + MER5A DNA MER1_type 30 159 -30 368 252 45 9 chr3 188274885 188274996 -29762162 + MER5A DNA MER1_type 1 115 -74 2018 151 36 36 chr3 188275022 188275386 -29761772 + THE1B LTR MaLR 1 364 0 490 199 173 19 chr3 188275894 188276050 -29761108 + MER5A DNA MER1_type 9 188 -1 1288 180 14 0 chr3 188276051 188276292 -29760866 + AluJb SINE Alu 87 312 0 723 248 25 0 chr3 188276706 188276867 -29760291 + FAM SINE Alu 1 165 -10 2072 129 3 0 chr3 188277019 188277306 -29759852 - AluSp SINE Alu -25 288 1 1960 135 29 52 chr3 188277890 188278274 -29758884 + THE1C LTR MaLR 1 375 0 196 336 103 9 chr3 188278375 188278491 -29758667 - MIR3 SINE MIR -67 141 15 309 51 0 0 chr3 188279074 188279113 -29758045 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 470 271 119 40 chr3 188279428 188279730 -29757428 - L2 LINE L2 -9 3263 2938 569 111 26 120 chr3 188279823 188279940 -29757218 - Charlie1b DNA MER1_type 0 523 418 2688 39 0 0 chr3 188279940 188280246 -29756912 - AluY SINE Alu -5 306 1 835 180 43 12 chr3 188280277 188280438 -29756720 + AluJb SINE Alu 139 304 -8 1376 170 154 48 chr3 188280460 188280606 -29756552 - Charlie1b DNA MER1_type -2351 410 281 2569 62 3 0 chr3 188280606 188280910 -29756248 - AluSx SINE Alu -5 307 3 1376 170 154 48 chr3 188280910 188281134 -29756024 - Charlie1b DNA MER1_type -2480 281 1 183 367 59 35 chr3 188281216 188281554 -29755604 - L2 LINE L2 -571 2743 2398 1639 260 154 11 chr3 188281690 188282255 -29754903 + MER69 DNA AcHobo 6 651 -1875 2353 110 0 0 chr3 188282279 188282580 -29754578 + AluSg SINE Alu 1 301 -9 734 312 144 18 chr3 188282597 188283055 -29754103 + MLT1G1 LTR MaLR 79 594 -1 253 339 67 15 chr3 188283210 188283405 -29753753 - L2 LINE L2 -1575 1739 1535 2520 74 0 7 chr3 188283653 188283963 -29753195 + AluY SINE Alu 1 308 -3 2601 27 7 3 chr3 188284005 188284302 -29752856 + AluY SINE Alu 1 298 -13 881 161 0 0 chr3 188284327 188284457 -29752701 + FLAM_C SINE Alu 1 130 -3 2165 122 7 0 chr3 188284810 188285104 -29752054 + AluSx SINE Alu 1 296 -16 402 226 164 34 chr3 188285128 188285274 -29751884 + MER103 DNA DNA 2 166 0 390 224 12 145 chr3 188285336 188285591 -29751567 + MIR SINE MIR 10 230 -32 538 243 105 22 chr3 188285771 188285952 -29751206 + MIR SINE MIR 49 244 -18 2304 122 0 0 chr3 188286060 188286372 -29750786 - AluSx SINE Alu 0 312 1 602 246 52 31 chr3 188286384 188286575 -29750583 - MIR SINE MIR -46 216 22 1846 225 100 45 chr3 188287709 188288300 -29748858 - L1M4 LINE L1 -2945 3201 2565 2421 104 0 0 chr3 188288300 188288608 -29748550 + AluSg SINE Alu 2 309 -1 1846 225 100 45 chr3 188288608 188288709 -29748449 - L1M4 LINE L1 -3581 2565 2471 315 296 164 58 chr3 188289363 188289779 -29747379 - L2 LINE L2 -9 3263 2804 192 282 27 87 chr3 188290162 188290311 -29746847 + MIR3 SINE MIR 64 203 -5 303 28 0 0 chr3 188291588 188291624 -29745534 + (TA)n Simple_repeat Simple_repeat 2 37 0 2391 58 0 17 chr3 188291624 188291917 -29745241 - AluY SINE Alu -23 288 1 180 0 0 0 chr3 188292228 188292248 -29744910 + (A)n Simple_repeat Simple_repeat 1 20 0 2272 98 0 55 chr3 188292314 188292642 -29744516 + AluSg SINE Alu 1 310 0 874 161 0 0 chr3 188292739 188292863 -29744295 + FLAM_C SINE Alu 1 124 -19 2307 78 0 19 chr3 188292873 188293182 -29743976 + AluY SINE Alu 1 303 -8 480 165 138 0 chr3 188293534 188293643 -29743515 + MER5C DNA MER1_type 1 124 -200 389 117 0 0 chr3 188293723 188293785 -29743373 + L1M1 LINE L1 5697 5758 -410 334 239 110 0 chr3 188293801 188293910 -29743248 + MIR SINE MIR 45 165 -97 312 250 150 0 chr3 188293958 188294058 -29743100 - MIR3 SINE MIR -45 163 49 2264 114 0 0 chr3 188294503 188294802 -29742356 - AluSx SINE Alu -12 300 2 302 302 16 31 chr3 188295078 188295207 -29741951 - LTR67 LTR ERVL -429 128 2 250 292 0 0 chr3 188295347 188295419 -29741739 + T-rich Low_complexity Low_complexity 2 73 0 408 205 27 36 chr3 188295539 188295651 -29741507 - L2 LINE L2 0 3313 3203 945 138 7 0 chr3 188295775 188295918 -29741240 + MER41B LTR ERV1 1 144 -491 2059 97 10 175 chr3 188295918 188296329 -29740829 - LTR14B LTR ERVK -1 607 1 788 61 45 106 chr3 188296332 188296464 -29740694 - HERVK14 LTR ERVK 0 5945 5822 323 194 0 16 chr3 188296464 188296526 -29740632 - MER41C LTR ERV1 -493 61 1 3199 69 31 24 chr3 188296526 188297174 -29739984 - HERVK14 LTR ERVK -186 5759 5038 371 41 0 0 chr3 188297174 188297223 -29739935 - HERV17 LTR ERV1 -8145 481 433 * 11159 55 4 3 chr3 188297222 188298677 -29738481 - HERV17 LTR ERV1 -3073 5553 2430 9044 88 3 8 chr3 188298660 188299858 -29737300 - HERV17 LTR ERV1 -6610 2016 824 * 6378 57 13 23 chr3 188300102 188300391 -29736767 - HERVK14 LTR ERVK -5128 817 527 2642 53 0 0 chr3 188300391 188300694 -29736464 - AluY SINE Alu -8 303 1 6378 57 13 23 chr3 188300694 188301229 -29735929 - HERVK14 LTR ERVK -5418 527 1 1917 91 19 198 chr3 188301229 188301648 -29735510 - LTR14B LTR ERVK 0 608 1 2431 126 8 11 chr3 188301651 188302023 -29735135 + MER41B LTR ERV1 138 508 -127 1849 132 0 0 chr3 188302023 188302281 -29734877 - AluSq SINE Alu -1 312 55 1098 198 34 82 chr3 188302282 188302610 -29734548 + MLT1C LTR MaLR 152 463 -4 369 316 101 28 chr3 188303337 188303440 -29733718 + L2 LINE L2 2249 2343 -971 2322 89 3 3 chr3 188303440 188303733 -29733425 - AluSg SINE Alu -17 293 1 369 316 101 28 chr3 188303733 188303876 -29733282 + L2 LINE L2 2343 2513 -801 296 302 150 58 chr3 188303952 188304083 -29733075 + L2 LINE L2 2054 2172 -1142 297 0 0 0 chr3 188304083 188304116 -29733042 + (CA)n Simple_repeat Simple_repeat 2 34 0 296 302 150 58 chr3 188304116 188304378 -29732780 + L2 LINE L2 2172 2483 -831 2085 134 3 31 chr3 188304501 188304822 -29732336 + AluSx SINE Alu 1 312 0 189 234 21 0 chr3 188305368 188305415 -29731743 + MIR SINE MIR 206 253 -9 779 257 152 54 chr3 188305668 188306204 -29730954 + L2 LINE L2 2497 3084 -229 2450 97 0 0 chr3 188306206 188306517 -29730641 - AluSp SINE Alu -2 311 1 514 241 183 27 chr3 188306539 188306763 -29730395 + MIR SINE MIR 2 260 -2 2184 113 14 0 chr3 188307497 188307790 -29729368 + AluSq SINE Alu 1 297 -16 453 19 0 0 chr3 188307883 188307937 -29729221 + (GA)n Simple_repeat Simple_repeat 2 55 0 2223 115 0 10 chr3 188307937 188308249 -29728909 + AluSg SINE Alu 2 310 0 1569 177 110 34 chr3 188308672 188309196 -29727962 - L1MC4 LINE L1 -681 7361 6734 2151 72 14 17 chr3 188312005 188312295 -29724863 + AluSq SINE Alu 1 289 -24 802 274 62 4 chr3 188313538 188313779 -29723379 - MIR SINE MIR 0 262 8 2412 97 0 0 chr3 188313886 188314195 -29722963 + AluSc SINE Alu 1 309 0 1936 149 0 30 chr3 188314936 188315238 -29721920 + AluSx SINE Alu 1 293 -19 2111 132 0 0 chr3 188316082 188316377 -29720781 + AluSx SINE Alu 1 295 -17 210 218 103 39 chr3 188316751 188316829 -29720329 + MIR SINE MIR 103 185 -77 2221 118 0 25 chr3 188317104 188317277 -29719881 - AluSx SINE Alu -5 307 144 2464 63 0 20 chr3 188317277 188317579 -29719579 - AluY SINE Alu -15 296 1 2221 118 0 25 chr3 188317579 188317720 -29719438 - AluSx SINE Alu -168 144 1 230 225 127 0 chr3 188318644 188318715 -29718443 - L1MC3 LINE L1 -1107 6678 6599 634 200 23 8 chr3 188320144 188320274 -29716884 - MER94 DNA DNA -1 133 2 339 287 11 0 chr3 188320950 188321044 -29716114 + MER81 DNA DNA 20 114 0 1556 192 20 27 chr3 188321578 188321875 -29715283 - AluJo SINE Alu -17 295 1 192 135 0 0 chr3 188322847 188322884 -29714274 + (TAA)n Simple_repeat Simple_repeat 2 38 0 671 273 116 55 chr3 188322940 188323251 -29713907 + L2 LINE L2 2984 3313 0 310 304 31 0 chr3 188323259 188323381 -29713777 - MIR SINE MIR -67 141 58 211 271 78 12 chr3 188324470 188324550 -29712608 + MIR SINE MIR 34 118 -96 583 204 0 0 chr3 188324627 188324725 -29712433 + FLAM_A SINE Alu 35 132 -10 2287 76 7 20 chr3 188324725 188325050 -29712108 + AluSp SINE Alu 1 313 0 240 360 90 0 chr3 188325050 188325150 -29712008 + L2 LINE L2 3156 3264 -8 291 54 0 0 chr3 188325325 188325362 -29711796 + (T)n Simple_repeat Simple_repeat 1 37 0 1752 170 3 11 chr3 188325490 188325808 -29711350 + AluJb SINE Alu 1 316 0 545 372 24 69 chr3 188325849 188326139 -29711019 - L2 LINE L2 -1 3271 2995 409 192 0 0 chr3 188326854 188326927 -29710231 - AluS SINE Alu -10 302 230 817 184 21 7 chr3 188327010 188327151 -29710007 + FRAM SINE Alu 4 146 -30 2441 57 0 0 chr3 188327166 188327480 -29709678 + AluY SINE Alu 1 314 0 295 288 99 0 chr3 188327960 188328071 -29709087 + MIR SINE MIR 18 139 -123 2216 84 3 39 chr3 188328658 188328967 -29708191 - AluSc SINE Alu -11 298 1 830 29 20 0 chr3 188329666 188329768 -29707390 - AluY SINE Alu 0 311 208 1862 128 21 14 chr3 188329921 188330073 -29707085 - AluSx SINE Alu -21 291 135 2310 92 0 0 chr3 188330073 188330365 -29706793 - AluSx SINE Alu -20 292 1 1862 128 21 14 chr3 188330365 188330501 -29706657 - AluSx SINE Alu -177 135 1 228 318 0 0 chr3 188330686 188330749 -29706409 + MIR SINE MIR 86 148 -114 316 349 45 82 chr3 188330756 188331086 -29706072 - L2 LINE L2 -8 3264 2947 26 0 0 0 chr3 188331727 188331753 -29705405 + AT_rich Low_complexity Low_complexity 1 26 0 411 270 153 33 chr3 188332825 188333036 -29704122 + MIR SINE MIR 10 241 -21 21 36 0 0 chr3 188333722 188333750 -29703408 + AT_rich Low_complexity Low_complexity 1 28 0 426 226 28 19 chr3 188336351 188336457 -29700701 + MIR3 SINE MIR 74 180 -28 491 290 76 59 chr3 188338203 188338558 -29698600 + L2 LINE L2 2933 3293 -20 393 165 87 48 chr3 188338564 188338658 -29698500 + U3 snRNA snRNA 111 211 -6 2034 117 7 0 chr3 188338658 188338932 -29698226 - AluSx SINE Alu -36 276 1 950 154 0 0 chr3 188339285 188339415 -29697743 - FLAM_C SINE Alu -3 130 1 2570 27 7 3 chr3 188339440 188339737 -29697421 - AluY SINE Alu -13 298 1 2500 74 0 7 chr3 188339779 188340089 -29697069 - AluY SINE Alu -3 308 1 306 345 64 15 chr3 188340329 188340532 -29696626 + L2 LINE L2 1527 1739 -1575 738 312 144 18 chr3 188340687 188341145 -29696013 - MLT1G1 LTR MaLR -1 594 79 2338 110 0 0 chr3 188341162 188341463 -29695695 - AluSg SINE Alu -9 301 1 1665 260 154 11 chr3 188341487 188342052 -29695106 - MER69 DNA AcHobo -1875 651 6 259 383 52 30 chr3 188342067 188342526 -29694632 + L2 LINE L2 2275 2743 -571 1391 170 154 48 chr3 188342608 188342832 -29694326 + Charlie1b DNA MER1_type 1 200 -2561 2547 62 3 0 chr3 188342832 188343136 -29694022 + AluSx SINE Alu 3 307 -5 1391 170 154 48 chr3 188343136 188343282 -29693876 + Charlie1b DNA MER1_type 200 410 -113 825 180 43 12 chr3 188343304 188343465 -29693693 - AluJb SINE Alu -8 304 139 2660 39 0 0 chr3 188343496 188343802 -29693356 + AluY SINE Alu 1 306 -5 572 111 26 120 chr3 188343802 188343919 -29693239 + Charlie1b DNA MER1_type 418 523 0 569 252 123 43 chr3 188344012 188344314 -29692844 + L2 LINE L2 2938 3263 -9 195 269 115 70 chr3 188345101 188345257 -29691901 + MIR3 SINE MIR 37 199 -9 7457 46 21 14 chr3 188345951 188347364 -29689794 + L1PA8 LINE L1 4749 6171 -1 180 216 78 0 chr3 188349327 188349378 -29687780 - MIR SINE MIR -107 155 101 861 39 0 39 chr3 188349469 188349598 -29687560 + (TTTC)n Simple_repeat Simple_repeat 1 124 0 2018 118 7 34 chr3 188349603 188349900 -29687258 - AluSx SINE Alu -15 297 9 315 308 19 19 chr3 188349922 188350026 -29687132 + MER5A DNA MER1_type 82 185 -4 2447 80 0 0 chr3 188350624 188350924 -29686234 + AluY SINE Alu 1 300 -11 2262 110 0 25 chr3 188351158 188351477 -29685681 - AluSx SINE Alu -1 311 1 2192 107 0 13 chr3 188351496 188351796 -29685362 - AluSx SINE Alu -16 296 1 2181 118 0 0 chr3 188352049 188352354 -29684804 - AluY SINE Alu -6 305 1 256 290 183 30 chr3 188352369 188352500 -29684658 + L2 LINE L2 3161 3311 -2 899 156 23 17 chr3 188353051 188353224 -29683934 + AluSg/x SINE Alu 139 312 0 2236 104 3 10 chr3 188353288 188353587 -29683571 - AluSx SINE Alu -15 297 1 320 342 62 35 chr3 188353613 188353799 -29683359 - MIR3 SINE MIR -1 207 17 2306 111 0 0 chr3 188354089 188354386 -29682772 - AluSx SINE Alu -14 298 2 707 112 0 0 chr3 188354435 188354533 -29682625 + AluSg/x SINE Alu 210 307 -2 382 298 115 39 chr3 188354634 188354946 -29682212 + MLT1H LTR MaLR 29 364 -185 325 287 54 95 chr3 188355091 188355408 -29681750 - LTR67 LTR ERVL -4 553 250 255 295 0 98 chr3 188355421 188355533 -29681625 - LTR67 LTR ERVL -190 367 267 583 269 35 128 chr3 188355562 188355967 -29681191 - LTR67 LTR ERVL -190 367 1 1243 210 95 42 chr3 188356083 188356412 -29680746 - L1ME3 LINE L1 -135 6027 5717 2098 126 0 13 chr3 188356412 188356713 -29680445 + AluSx SINE Alu 1 297 -15 2347 74 0 39 chr3 188356718 188357029 -29680129 + AluY SINE Alu 1 299 -12 1243 210 95 42 chr3 188357029 188357135 -29680023 - L1ME3 LINE L1 -448 5714 5480 1845 113 0 0 chr3 188357154 188357394 -29679764 - AluSq SINE Alu -73 240 1 425 147 101 7 chr3 188357983 188358109 -29679049 - L1ME3 LINE L1 -699 5475 5329 708 186 48 37 chr3 188358145 188358343 -29678815 - MER6 DNA MER2_type 0 865 -65 1844 108 17 0 chr3 188358350 188358645 -29678513 - L1P LINE L1 -3549 2597 2298 * 3849 201 46 6 chr3 188358643 188359358 -29677800 - L1PA13 LINE L1 -5842 945 202 408 263 66 37 chr3 188359363 188359537 -29677621 - Tigger5 DNA MER2_type -176 2147 4 592 296 40 35 chr3 188359599 188360121 -29677037 - L1ME LINE L1 -5069 1001 527 688 269 3 90 chr3 188360246 188360547 -29676611 - L1ME LINE L1 -5539 531 257 480 60 75 0 chr3 188360580 188360647 -29676511 - L1PA11 LINE L1 -2 6172 6101 581 315 22 26 chr3 188360647 188360920 -29676238 - L1ME LINE L1 -5796 274 3 2626 44 3 0 chr3 188360936 188361234 -29675924 - AluY SINE Alu -12 299 1 1651 135 138 13 chr3 188361316 188361620 -29675538 + MSTA LTR MaLR 87 428 0 275 301 12 0 chr3 188361642 188361725 -29675433 + MIR SINE MIR 73 156 -106 5257 78 30 26 chr3 188363055 188363743 -29673415 + LTR8 LTR ERV1 1 691 0 205 211 0 0 chr3 188364117 188364155 -29673003 + T-rich Low_complexity Low_complexity 1 38 0 469 297 96 48 chr3 188364653 188364808 -29672350 + MIR SINE MIR 4 175 -87 2247 112 0 3 chr3 188364808 188365104 -29672054 + AluSg SINE Alu 1 295 -15 469 297 96 48 chr3 188365104 188365177 -29671981 + MIR SINE MIR 175 243 -19 978 159 103 52 chr3 188365199 188365451 -29671707 - ORSL DNA AcHobo -1 274 10 2315 107 3 0 chr3 188366252 188366560 -29670598 - AluSq SINE Alu -4 309 1 2178 136 0 0 chr3 188366588 188366897 -29670261 + AluSx SINE Alu 1 309 -3 457 277 151 15 chr3 188367503 188367709 -29669449 - MIR SINE MIR -3 259 26 443 235 31 107 chr3 188367713 188367836 -29669322 + MER5A DNA MER1_type 9 114 -75 2132 94 0 4 chr3 188367836 188368139 -29669019 - AluSx SINE Alu 0 310 9 443 235 31 107 chr3 188368139 188368210 -29668948 + MER5A DNA MER1_type 114 189 0 442 266 32 8 chr3 188368215 188368339 -29668819 + MIR SINE MIR 65 191 -71 959 262 145 57 chr3 188369265 188369795 -29667363 - L1ME3A LINE L1 -171 5991 5415 1169 120 46 0 chr3 188369980 188370155 -29667003 - AluSg/x SINE Alu -2 310 128 290 294 35 21 chr3 188370157 188370300 -29666858 - L1ME3A LINE L1 -867 5279 5135 2455 62 0 0 chr3 188370301 188370639 -29666519 + AluY SINE Alu 1 311 0 1852 141 24 10 chr3 188370976 188371286 -29665872 - AluSq SINE Alu 0 313 1 186 308 68 60 chr3 188371418 188371551 -29665607 + MIR3 SINE MIR 63 196 -12 1588 208 24 61 chr3 188371557 188371936 -29665222 - MLT1A1 LTR MaLR 0 365 1 2290 107 0 0 chr3 188372325 188372633 -29664525 - AluSx SINE Alu -4 308 1 366 340 0 10 chr3 188372717 188372817 -29664341 - MIR SINE MIR -90 118 20 2026 113 22 4 chr3 188372898 188373211 -29663947 - AluSc SINE Alu 0 318 1 2393 158 23 10 chr3 188373435 188373820 -29663338 + MLT1B LTR MaLR 1 390 0 333 47 0 0 chr3 188374473 188374516 -29662642 + (TG)n Simple_repeat Simple_repeat 2 44 0 669 126 0 0 chr3 188374532 188374619 -29662539 + AluSg/x SINE Alu 204 290 -20 2338 97 7 0 chr3 188374680 188374989 -29662169 - AluSp SINE Alu -2 311 1 499 269 132 0 chr3 188375013 188375210 -29661948 - MIR SINE MIR -28 234 12 248 225 62 12 chr3 188375220 188375300 -29661858 + MER103 DNA DNA 74 157 -9 28 0 0 0 chr3 188375494 188375522 -29661636 + AT_rich Low_complexity Low_complexity 1 28 0 921 223 192 54 chr3 188375530 188375921 -29661237 - LTR16A1 LTR ERVL -9 448 4 213 178 0 0 chr3 188376105 188376150 -29661008 + CT-rich Low_complexity Low_complexity 1 45 0 2039 347 68 26 chr3 188376194 188377627 -29659531 - ERVL LTR ERVL -504 5260 3768 244 279 73 0 chr3 188377750 188377818 -29659340 + LTR67 LTR ERVL 3 75 -482 2792 144 22 2 chr3 188378127 188378543 -29658615 - MSTB LTR MaLR -2 424 1 289 311 13 46 chr3 188378547 188378698 -29658460 + LTR67 LTR ERVL 412 557 0 201 223 32 11 chr3 188379214 188379308 -29657850 + CT-rich Low_complexity Low_complexity 1 96 0 288 255 59 72 chr3 188379323 188379476 -29657682 - L1ME4a LINE L1 -12 6109 5959 213 128 64 0 chr3 188379526 188379573 -29657585 + (TA)n Simple_repeat Simple_repeat 2 51 0 332 287 28 9 chr3 188379811 188379919 -29657239 - L1ME4a LINE L1 -490 5631 5522 2063 117 11 0 chr3 188380346 188380651 -29656507 + AluSx SINE Alu 1 308 0 882 225 37 5 chr3 188381014 188381232 -29655926 + L1ME LINE L1 5540 5764 -357 251 256 26 0 chr3 188381233 188381311 -29655847 + MER116 DNA Mariner 1 80 0 2424 78 0 0 chr3 188381440 188381733 -29655425 - AluY SINE Alu -18 293 1 2287 108 0 0 chr3 188381991 188382287 -29654871 + AluSq SINE Alu 1 296 -17 983 261 35 0 chr3 188383284 188383510 -29653648 + MIR SINE MIR 23 256 -6 2241 118 3 3 chr3 188383747 188384052 -29653106 - AluSx SINE Alu -7 305 1 686 151 156 50 chr3 188384558 188384737 -29652421 + ORSL DNA AcHobo 1 198 -77 1819 80 52 8 chr3 188384740 188384989 -29652169 + AluSc SINE Alu 30 289 -20 2200 119 3 3 chr3 188384995 188385306 -29651852 - AluSx SINE Alu 0 312 2 358 191 36 12 chr3 188385384 188385468 -29651690 + L2 LINE L2 3226 3311 -2 378 219 97 32 chr3 188385578 188385733 -29651425 - L1ME4a LINE L1 -2 6119 5955 6239 136 78 67 chr3 188385776 188386597 -29650561 + Tigger3b DNA MER2_type 2 842 -2186 2163 105 0 7 chr3 188386597 188386891 -29650267 + AluSg SINE Alu 1 292 -18 6239 136 78 67 chr3 188386891 188387286 -29649872 + Tigger3b DNA MER2_type 842 1231 0 2079 102 36 0 chr3 188387499 188387802 -29649356 + AluSq SINE Alu 1 313 0 272 102 20 0 chr3 188388083 188388132 -29649026 + (GA)n Simple_repeat Simple_repeat 1 50 0 277 109 36 0 chr3 188389202 188389257 -29647901 + CT-rich Low_complexity Low_complexity 1 57 0 2411 218 105 8 chr3 188389705 188390325 -29646833 + L1MC4 LINE L1 7350 8029 -13 2123 94 45 3 chr3 188390330 188390617 -29646541 - AluSq SINE Alu -14 299 1 1166 113 13 0 chr3 188390688 188390847 -29646311 - AluSg SINE Alu -149 161 1 2188 92 0 0 chr3 188390900 188391212 -29645946 - AluY SINE Alu 0 312 1 21 0 0 0 chr3 188391212 188391233 -29645925 + AT_rich Low_complexity Low_complexity 1 21 0 3624 103 21 19 chr3 188391240 188391773 -29645385 - L1MA1 LINE L1 0 6302 5769 * 6722 87 25 9 chr3 188391767 188392280 -29644878 - L1PA12 LINE L1 0 6168 5665 2194 101 7 0 chr3 188392280 188392567 -29644591 - AluSp SINE Alu -24 289 1 6722 87 25 9 chr3 188392567 188393791 -29643367 - L1PA12 LINE L1 -503 5665 4431 10764 152 5 14 chr3 188393796 188394900 -29642258 - L1MA1 LINE L1 -529 5775 4662 2108 173 126 5 chr3 188394900 188395282 -29641876 + MSTA LTR MaLR 1 428 0 10764 152 5 14 chr3 188395282 188395716 -29641442 - L1MA1 LINE L1 -1642 4662 4225 2268 67 3 17 chr3 188395716 188396014 -29641144 - AluY SINE Alu -17 294 1 10764 152 5 14 chr3 188396014 188396791 -29640367 - L1MA1 LINE L1 -2079 4225 3484 327 189 38 18 chr3 188396828 188396915 -29640243 - L1MC5 LINE L1 -985 6800 6713 826 187 6 41 chr3 188397790 188397961 -29639197 + AluJo SINE Alu 123 287 -25 228 35 0 0 chr3 188397969 188397998 -29639160 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 245 89 22 0 chr3 188398501 188398546 -29638612 + (CA)n Simple_repeat Simple_repeat 2 47 0 195 170 0 0 chr3 188400155 188400202 -29636956 + T-rich Low_complexity Low_complexity 1 47 0 918 110 0 0 chr3 188400203 188400330 -29636828 - L1MA2 LINE L1 0 6304 6178 5677 98 18 8 chr3 188400368 188401127 -29636031 - L1PA11 LINE L1 0 6174 5408 2086 72 0 0 chr3 188401136 188401387 -29635771 - AluY SINE Alu -17 294 44 1060 85 52 0 chr3 188401388 188401541 -29635617 + L1PA11 LINE L1 5925 6085 -89 302 89 0 22 chr3 188401541 188401586 -29635572 - AluY SINE Alu -256 44 1 3290 175 107 45 chr3 188402201 188402377 -29634781 - L1M4c LINE L1 -5388 996 832 2220 158 19 27 chr3 188402377 188402744 -29634414 + THE1B LTR MaLR 1 364 0 3290 175 107 45 chr3 188402744 188403345 -29633813 - L1M4c LINE L1 -5552 832 171 1943 134 58 71 chr3 188403349 188403729 -29633429 + THE1C LTR MaLR 1 375 0 9955 115 69 11 chr3 188403729 188405222 -29631936 + THE1C-int LTR MaLR 1 1580 0 1920 120 70 91 chr3 188405222 188405605 -29631553 + THE1C LTR MaLR 1 375 0 797 157 36 0 chr3 188405609 188405749 -29631409 - L1M4c LINE L1 -6217 167 23 408 162 0 0 chr3 188405762 188405830 -29631328 - MLT1A1 LTR MaLR -2 363 296 554 214 36 0 chr3 188406617 188406729 -29630429 - L1MC1 LINE L1 -242 6091 5976 824 276 9 86 chr3 188406866 188407181 -29629977 + MLT1K LTR MaLR 265 555 -33 4622 148 32 3 chr3 188407374 188408113 -29629045 - L1MC1 LINE L1 0 6333 5573 1899 173 16 52 chr3 188408114 188408479 -29628679 - MLT1A1 LTR MaLR -2 363 12 1642 193 59 0 chr3 188408482 188408839 -29628319 - L1MC1 LINE L1 -743 5403 5209 927 83 0 0 chr3 188409543 188409664 -29627494 + AluY SINE Alu 191 311 0 765 306 174 33 chr3 188410275 188410640 -29626518 + MLT1K LTR MaLR 2 454 -134 1834 144 41 14 chr3 188410640 188410931 -29626227 - AluSx SINE Alu -13 299 1 765 306 174 33 chr3 188410931 188411052 -29626106 + MLT1K LTR MaLR 454 557 -31 2277 106 0 10 chr3 188412564 188412876 -29624282 - AluSx SINE Alu -3 309 1 1478 143 4 31 chr3 188412927 188413185 -29623973 - L1PA12 LINE L1 -2018 5566 5316 * 6852 197 17 16 chr3 188413174 188414123 -29623035 - L1PA12 LINE L1 -3019 4565 3618 2199 95 0 3 chr3 188414123 188414448 -29622710 - AluY SINE Alu 0 324 1 2201 118 0 3 chr3 188414454 188414751 -29622407 - AluSq SINE Alu -17 296 1 6852 197 17 16 chr3 188414751 188415028 -29622130 - L1PA12 LINE L1 -3970 3614 3339 1695 157 98 45 chr3 188415028 188415384 -29621774 + THE1C LTR MaLR 1 375 0 6852 197 17 16 chr3 188415384 188416409 -29620749 - L1PA12 LINE L1 -4245 3339 2304 417 190 0 0 chr3 188416432 188416532 -29620626 - L1P LINE L1 -3019 3127 3028 318 102 0 0 chr3 188416527 188416576 -29620582 - L1PA12 LINE L1 -5278 2303 2255 * 307 206 15 0 chr3 188416590 188416658 -29620500 - L2 LINE L2 -2749 565 497 8027 227 59 38 chr3 188416673 188418862 -29618296 - L1PA12 LINE L1 -5328 2253 19 2429 100 3 0 chr3 188419212 188419522 -29617636 - AluSq SINE Alu -2 311 1 2349 107 0 0 chr3 188420168 188420468 -29616690 - AluSq SINE Alu -13 300 1 270 319 8 59 chr3 188421753 188421872 -29615286 + MIR SINE MIR 17 129 -79 24 32 0 0 chr3 188422377 188422408 -29614750 + AT_rich Low_complexity Low_complexity 1 31 0 2511 77 0 0 chr3 188423118 188423416 -29613742 + AluY SINE Alu 1 298 -13 3503 125 2 28 chr3 188423831 188424406 -29612752 + L1PA12 LINE L1 5398 5953 -215 2046 115 45 3 chr3 188424680 188424967 -29612191 - AluSq SINE Alu -14 299 1 1984 148 6 25 chr3 188425852 188426170 -29610988 - AluJo SINE Alu 0 312 1 401 144 144 60 chr3 188427236 188427376 -29609782 + MER5A DNA MER1_type 1 189 0 2328 107 0 3 chr3 188427724 188428033 -29609125 - AluSq SINE Alu -5 308 1 309 51 0 0 chr3 188428430 188428469 -29608689 + (TG)n Simple_repeat Simple_repeat 1 39 0 245 248 234 0 chr3 188429350 188429487 -29607671 + L1ME4a LINE L1 5953 6121 0 212 370 63 8 chr3 188429762 188429889 -29607269 + MIR SINE MIR 38 171 -91 289 258 110 7 chr3 188430101 188430254 -29606904 - MIR SINE MIR -64 144 25 2254 100 0 7 chr3 188430932 188431222 -29605936 + AluSg SINE Alu 1 288 -22 963 223 64 43 chr3 188431778 188432060 -29605098 + L1MA9 LINE L1 5987 6274 -38 44 46 0 0 chr3 188432062 188432127 -29605031 + AT_rich Low_complexity Low_complexity 1 65 0 2399 85 6 22 chr3 188432135 188432453 -29604705 + AluSq SINE Alu 1 313 0 233 309 0 91 chr3 188432774 188432851 -29604307 + MIR SINE MIR 14 80 -182 2128 193 66 53 chr3 188432851 188433364 -29603794 + MLT2B1 LTR ERVL 1 520 0 233 309 0 91 chr3 188433364 188433396 -29603762 + MIR SINE MIR 80 113 -149 245 245 208 0 chr3 188434472 188434611 -29602547 + MIR SINE MIR 38 206 -56 7207 157 21 16 chr3 188434622 188434914 -29602244 + L1MCa LINE L1 18 307 -6119 2565 116 8 3 chr3 188434914 188435276 -29601882 + THE1B LTR MaLR 1 364 0 7207 157 21 16 chr3 188435276 188436240 -29600918 + L1MCa LINE L1 307 1281 -5145 724 231 13 5 chr3 188436233 188436426 -29600732 + L1MCa LINE L1 2473 2667 -3759 * 505 179 8 43 chr3 188436448 188436496 -29600662 - L1M4 LINE L1 -2403 3743 3695 2814 16 0 0 chr3 188436496 188436799 -29600359 - AluY SINE Alu -8 303 1 505 179 8 43 chr3 188436799 188436867 -29600291 - L1M4 LINE L1 -2451 3695 3631 550 59 0 0 chr3 188436874 188436942 -29600216 + AluSp/q SINE Alu 211 278 -35 324 0 0 0 chr3 188436946 188436982 -29600176 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 428 286 0 0 chr3 188436983 188437088 -29600070 + L1MCa LINE L1 4029 4133 -2293 1531 127 0 9 chr3 188437089 188437221 -29599937 + AluSg SINE Alu 1 132 -178 192 40 0 0 chr3 188437221 188437246 -29599912 + (CA)n Simple_repeat Simple_repeat 2 26 0 1531 127 0 9 chr3 188437246 188437326 -29599832 + AluSg SINE Alu 132 211 -99 4616 135 16 22 chr3 188437345 188437571 -29599587 - HSMAR2 DNA Mariner -1 1301 1075 2544 67 0 16 chr3 188437571 188437887 -29599271 - AluY SINE Alu 0 311 1 4616 135 16 22 chr3 188437887 188438395 -29598763 - HSMAR2 DNA Mariner -227 1075 571 7064 172 95 76 chr3 188438402 188440050 -29597108 - MER52A LTR ERV1 -19 1736 58 3631 134 11 7 chr3 188440659 188441219 -29595939 - HSMAR2 DNA Mariner -739 563 2 3816 144 9 20 chr3 188441220 188441654 -29595504 - Ricksha DNA DNA -916 2330 1904 2410 88 0 0 chr3 188441654 188441959 -29595199 - AluY SINE Alu -6 305 1 3816 144 9 20 chr3 188441959 188442157 -29595001 - Ricksha DNA DNA -1342 1904 1705 337 167 0 0 chr3 188442163 188442223 -29594935 + Ricksha DNA DNA 3184 3243 -8 462 307 79 17 chr3 188442303 188442459 -29594699 + LTR33 LTR ERVL 4 149 -372 2405 142 31 17 chr3 188442459 188442682 -29594476 - MSTA LTR MaLR 0 428 195 2295 114 0 0 chr3 188442682 188442979 -29594179 - AluSx SINE Alu -15 297 1 2405 142 31 17 chr3 188442979 188443177 -29593981 - MSTA LTR MaLR -233 195 1 462 307 79 17 chr3 188443177 188443470 -29593688 + LTR33 LTR ERVL 149 520 -1 1830 159 7 23 chr3 188443538 188443847 -29593311 + AluSx SINE Alu 1 304 -8 313 271 33 60 chr3 188444008 188444159 -29592999 - MER5A DNA MER1_type 0 189 43 * 671 156 15 52 chr3 188444025 188444160 -29592998 + MER5A DNA MER1_type 30 159 -30 368 252 45 9 chr3 188444272 188444383 -29592775 + MER5A DNA MER1_type 1 115 -74 2018 151 36 36 chr3 188444409 188444773 -29592385 + THE1B LTR MaLR 1 364 0 490 199 173 19 chr3 188445278 188445434 -29591724 + MER5A DNA MER1_type 9 188 -1 1288 180 14 0 chr3 188445435 188445676 -29591482 + AluJb SINE Alu 87 312 0 723 248 25 0 chr3 188446090 188446251 -29590907 + FAM SINE Alu 1 165 -10 2072 129 3 0 chr3 188446403 188446690 -29590468 - AluSp SINE Alu -25 288 1 1975 133 29 52 chr3 188447274 188447658 -29589500 + THE1C LTR MaLR 1 375 0 196 336 103 9 chr3 188447759 188447875 -29589283 - MIR3 SINE MIR -67 141 15 255 61 0 0 chr3 188448456 188448489 -29588669 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 470 271 119 40 chr3 188448804 188449106 -29588052 - L2 LINE L2 -9 3263 2938 569 111 26 120 chr3 188449199 188449316 -29587842 - Charlie1b DNA MER1_type 0 523 418 2714 36 0 0 chr3 188449316 188449622 -29587536 - AluY SINE Alu -5 306 1 824 181 44 12 chr3 188449654 188449814 -29587344 + AluJb SINE Alu 140 304 -8 1376 170 154 48 chr3 188449836 188449982 -29587176 - Charlie1b DNA MER1_type -2351 410 281 2582 59 3 0 chr3 188449982 188450286 -29586872 - AluSx SINE Alu -5 307 3 1376 170 154 48 chr3 188450286 188450510 -29586648 - Charlie1b DNA MER1_type -2480 281 1 183 367 59 35 chr3 188450592 188450930 -29586228 - L2 LINE L2 -571 2743 2398 1591 263 145 11 chr3 188451077 188451629 -29585529 + MER69 DNA AcHobo 26 651 -1875 2316 113 0 0 chr3 188451653 188451953 -29585205 + AluSg SINE Alu 1 300 -10 734 312 144 18 chr3 188451970 188452428 -29584730 + MLT1G1 LTR MaLR 79 594 -1 253 339 67 15 chr3 188452583 188452778 -29584380 - L2 LINE L2 -1575 1739 1535 2468 78 0 7 chr3 188453026 188453335 -29583823 + AluY SINE Alu 1 307 -4 2601 27 7 3 chr3 188453377 188453674 -29583484 + AluY SINE Alu 1 298 -13 895 154 0 0 chr3 188453699 188453829 -29583329 + FLAM_C SINE Alu 1 130 -3 2057 117 7 0 chr3 188454182 188454456 -29582702 + AluSx SINE Alu 1 276 -36 382 175 87 48 chr3 188454456 188454550 -29582608 - U3 snRNA snRNA -6 211 111 402 290 76 59 chr3 188454556 188454911 -29582247 - L2 LINE L2 -20 3293 2933 393 226 28 19 chr3 188456659 188456765 -29580393 - MIR3 SINE MIR -28 180 74 21 36 0 0 chr3 188459366 188459394 -29577764 + AT_rich Low_complexity Low_complexity 1 28 0 356 270 153 33 chr3 188460080 188460291 -29576867 - MIR SINE MIR -21 241 10 26 0 0 0 chr3 188461363 188461389 -29575769 + AT_rich Low_complexity Low_complexity 1 26 0 219 339 55 91 chr3 188462026 188462356 -29574802 + L2 LINE L2 2947 3264 -8 225 296 0 0 chr3 188462363 188462417 -29574741 - MIR SINE MIR -114 148 95 1878 128 21 14 chr3 188462611 188462747 -29574411 + AluSx SINE Alu 1 135 -177 2314 96 0 0 chr3 188462747 188463039 -29574119 + AluSx SINE Alu 1 292 -20 1878 128 21 14 chr3 188463039 188463191 -29573967 + AluSx SINE Alu 135 291 -21 848 29 10 0 chr3 188463344 188463447 -29573711 + AluY SINE Alu 208 311 0 2204 88 3 39 chr3 188464147 188464455 -29572703 + AluSc SINE Alu 1 297 -12 258 288 99 0 chr3 188465042 188465153 -29572005 - MIR SINE MIR -123 139 18 240 0 0 31 chr3 188465633 188465665 -29571493 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2484 53 0 0 chr3 188465665 188465947 -29571211 - AluY SINE Alu -1 313 1 817 184 21 7 chr3 188465962 188466103 -29571055 - FRAM SINE Alu -30 146 4 409 192 0 0 chr3 188466186 188466259 -29570899 + AluS SINE Alu 230 302 -10 530 376 24 69 chr3 188466967 188467257 -29569901 + L2 LINE L2 2995 3271 -1 1751 170 3 11 chr3 188467298 188467616 -29569542 - AluJb SINE Alu 0 316 1 282 56 0 0 chr3 188467744 188467780 -29569378 + (A)n Simple_repeat Simple_repeat 1 36 0 240 360 90 0 chr3 188467955 188468055 -29569103 - L2 LINE L2 -8 3264 3156 2287 76 7 20 chr3 188468055 188468380 -29568778 - AluSp SINE Alu 0 313 1 583 204 0 0 chr3 188468380 188468478 -29568680 - FLAM_A SINE Alu -10 132 35 211 271 78 12 chr3 188468555 188468635 -29568523 - MIR SINE MIR -96 112 34 310 304 31 0 chr3 188469705 188469827 -29567331 + MIR SINE MIR 58 141 -67 660 276 116 55 chr3 188469835 188470146 -29567012 - L2 LINE L2 0 3313 2984 192 135 0 0 chr3 188470202 188470239 -29566919 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1546 190 21 28 chr3 188471211 188471501 -29565657 + AluJo SINE Alu 1 288 -24 339 287 11 0 chr3 188472037 188472131 -29565027 - MER81 DNA DNA 0 114 20 634 200 23 8 chr3 188472807 188472937 -29564221 + MER94 DNA DNA 2 133 -1 258 156 0 0 chr3 188474363 188474408 -29562750 + (TA)n Simple_repeat Simple_repeat 2 46 0 2221 118 0 25 chr3 188475361 188475502 -29561656 + AluSx SINE Alu 1 144 -168 2464 63 0 20 chr3 188475502 188475804 -29561354 + AluY SINE Alu 1 296 -15 2221 118 0 25 chr3 188475804 188475977 -29561181 + AluSx SINE Alu 144 307 -5 210 218 103 39 chr3 188476252 188476330 -29560828 - MIR SINE MIR -77 185 103 2111 132 0 0 chr3 188476704 188476999 -29560159 - AluSx SINE Alu -17 295 1 1936 149 0 30 chr3 188477843 188478145 -29559013 - AluSx SINE Alu -19 293 1 2412 97 0 0 chr3 188478886 188479195 -29557963 - AluSc SINE Alu 0 309 1 802 274 62 4 chr3 188479302 188479543 -29557615 + MIR SINE MIR 8 262 0 285 310 175 22 chr3 188481056 188481324 -29555834 - L2 LINE L2 -1216 2098 1790 2105 100 3 7 chr3 188481625 188481914 -29555244 + AluSc SINE Alu 1 288 -21 369 316 117 72 chr3 188481950 188482935 -29554223 + L2 LINE L2 1836 2864 -450 331 286 0 0 chr3 188483001 188483078 -29554080 - MER63 DNA MER1_type 0 1062 986 2858 79 16 0 chr3 188483078 188483456 -29553702 + MER41A LTR ERV1 1 384 -170 261 0 0 0 chr3 188483981 188484010 -29553148 + (T)n Simple_repeat Simple_repeat 1 29 0 396 257 85 7 chr3 188484134 188484275 -29552883 - MIR SINE MIR -50 158 2 2894 177 39 4 chr3 188484286 188484778 -29552380 + LTR22 LTR ERVK 1 509 0 438 120 87 43 chr3 188485036 188485128 -29552030 + LTR9B LTR ERV1 7 102 -542 40958 69 8 6 chr3 188485128 188491244 -29545914 - L1PA6 LINE L1 -5 6149 22 2836 181 49 9 chr3 188491257 188491786 -29545372 + LTR9B LTR ERV1 95 644 0 354 211 105 53 chr3 188491786 188491881 -29545277 + HUERS-P3b LTR ERV1 1 100 -7318 806 194 43 38 chr3 188491888 188492074 -29545084 + HUERS-P3b LTR ERV1 440 626 -8293 6645 191 29 30 chr3 188492114 188493457 -29543701 + HUERS-P3b LTR ERV1 764 2104 -5314 1514 74 11 0 chr3 188493489 188493678 -29543480 - AluSx SINE Alu -4 308 118 239 244 119 60 chr3 188493760 188493928 -29543230 + MLT1L LTR MaLR 437 614 -1 224 284 137 0 chr3 188493967 188494069 -29543089 + L3 LINE CR1 1306 1421 -156 613 122 24 0 chr3 188494077 188494159 -29542999 - AluSc SINE Alu -111 198 115 2035 117 39 0 chr3 188494694 188494977 -29542181 - AluSq SINE Alu -19 294 1 294 323 56 56 chr3 188495552 188495747 -29541411 - MIR3 SINE MIR -2 206 12 309 51 0 0 chr3 188496631 188496670 -29540488 + (CA)n Simple_repeat Simple_repeat 2 40 0 209 238 0 33 chr3 188496670 188496792 -29540366 + (TA)n Simple_repeat Simple_repeat 1 118 0 336 285 0 31 chr3 188496793 188496923 -29540235 + (CATATA)n Simple_repeat Simple_repeat 6 131 0 2385 170 39 5 chr3 188496923 188497329 -29539829 + MER7C DNA MER2_type 2 421 -181 301 154 19 0 chr3 188497345 188497397 -29539761 + MER7C DNA MER2_type 369 421 -181 721 151 9 0 chr3 188497398 188497504 -29539654 - AluSq/x SINE Alu -204 108 2 5788 141 6 5 chr3 188497505 188498362 -29538796 + HUERS-P3 LTR ERV1 2427 3284 -5635 917 189 0 0 chr3 188498356 188498499 -29538659 + HUERS-P3 LTR ERV1 4540 4682 -4237 * 4016 142 14 17 chr3 188498536 188499268 -29537890 + HUERS-P3 LTR ERV1 4966 6300 -2619 2309 211 11 42 chr3 188499257 188499300 -29537858 + HUERS-P3 LTR ERV1 6487 6530 -888 * 2332 81 3 13 chr3 188499300 188499607 -29537551 + AluSg SINE Alu 1 304 -6 2309 211 11 42 chr3 188499607 188500124 -29537034 + HUERS-P3 LTR ERV1 6530 6961 -457 544 156 24 127 chr3 188500104 188500168 -29536990 + HUERS-P3 LTR ERV1 2383 2452 -2563 * 1909 120 33 7 chr3 188500168 188500483 -29536675 + AluSx SINE Alu 1 322 0 657 115 29 0 chr3 188500491 188500595 -29536563 + L1PA6 LINE L1 6048 6154 0 544 156 24 127 chr3 188500595 188500732 -29536426 + HUERS-P3 LTR ERV1 2459 2572 -2443 1392 175 13 4 chr3 188501045 188501286 -29535872 + HUERS-P3 LTR ERV1 6851 8919 0 3138 179 45 24 chr3 188501292 188501917 -29535241 + LTR9B LTR ERV1 7 644 0 236 293 17 0 chr3 188502712 188502770 -29534388 - MIR SINE MIR -140 122 64 2447 60 3 0 chr3 188502788 188503086 -29534072 + AluY SINE Alu 1 299 -12 953 186 51 19 chr3 188503856 188503982 -29533176 - L1PB4 LINE L1 -12 6144 6007 4987 50 5 18 chr3 188503982 188504580 -29532578 - LTR10C LTR ERV1 -1 590 1 953 186 51 19 chr3 188504580 188504668 -29532490 - L1PB4 LINE L1 -149 6007 5923 1667 217 35 14 chr3 188504726 188505095 -29532063 + LTR9B LTR ERV1 7 383 -261 353 250 277 0 chr3 188505152 188505300 -29531858 + MER5A DNA MER1_type 1 189 0 222 269 0 0 chr3 188506261 188506313 -29530845 + GA-rich Low_complexity Low_complexity 1 52 0 1962 105 6 67 chr3 188506748 188507061 -29530097 + AluSx SINE Alu 1 294 -18 2249 152 127 22 chr3 188507353 188507762 -29529396 + LTR47A LTR ERVL 1 452 0 1602 161 3 63 chr3 188508207 188508262 -29528896 + AluJb SINE Alu 1 58 -254 2892 10 0 0 chr3 188508262 188508573 -29528585 + AluYa5 SINE Alu 1 311 0 1602 161 3 63 chr3 188508573 188508833 -29528325 + AluJb SINE Alu 58 297 -15 237 274 137 0 chr3 188509267 188509362 -29527796 + L2 LINE L2 3206 3313 0 1994 129 4 0 chr3 188509839 188510118 -29527040 + AluSx SINE Alu 1 280 -32 1549 174 38 7 chr3 188510154 188510442 -29526716 + AluJb SINE Alu 1 297 -15 228 220 20 0 chr3 188510635 188510685 -29526473 - MIR SINE MIR -79 129 79 229 275 50 0 chr3 188511013 188511093 -29526065 - MIR3 SINE MIR -6 202 119 336 228 11 54 chr3 188511172 188511264 -29525894 - MER103 DNA DNA -43 123 36 180 278 135 24 chr3 188511316 188511442 -29525716 - MIR3 SINE MIR -50 158 19 774 226 76 70 chr3 188512677 188512978 -29524180 - MER102b DNA MER1_type -4 337 35 2335 92 16 0 chr3 188513193 188513498 -29523660 + AluSq SINE Alu 1 310 -3 482 291 97 0 chr3 188514177 188514383 -29522775 - MARNA DNA Mariner -174 412 187 2251 92 41 0 chr3 188514392 188514687 -29522471 - AluSq SINE Alu -6 307 1 951 148 0 77 chr3 188514697 188514879 -29522279 + AluSg/x SINE Alu 130 297 -15 187 267 0 0 chr3 188514962 188515007 -29522151 + MIR SINE MIR 69 113 -149 26 0 0 0 chr3 188515011 188515037 -29522121 + AT_rich Low_complexity Low_complexity 1 26 0 2659 49 0 0 chr3 188515037 188515343 -29521815 - AluY SINE Alu -5 306 1 299 250 152 0 chr3 188515384 188515476 -29521682 + L2 LINE L2 3207 3312 -1 585 281 106 58 chr3 188515500 188515888 -29521270 + L1ME4a LINE L1 5411 5814 -307 237 158 277 20 chr3 188515952 188516053 -29521105 + L1ME4a LINE L1 5984 6110 -11 491 296 91 16 chr3 188516604 188516790 -29520368 - L2 LINE L2 0 3272 3073 2603 52 7 0 chr3 188516808 188517117 -29520041 + AluY SINE Alu 1 311 0 1896 160 0 25 chr3 188517479 188517805 -29519353 - AluJb SINE Alu 0 318 1 216 281 130 43 chr3 188518041 188518226 -29518932 + L2 LINE L2 2909 3109 -163 198 309 21 75 chr3 188518253 188518347 -29518811 + L2 LINE L2 3175 3263 -9 1509 173 72 4 chr3 188519042 188519319 -29517839 - AluJo SINE Alu -16 296 1 351 44 0 0 chr3 188519519 188519564 -29517594 + (TG)n Simple_repeat Simple_repeat 2 46 0 197 323 158 8 chr3 188520054 188520181 -29516977 + L2 LINE L2 3151 3296 -17 703 247 53 26 chr3 188520600 188520790 -29516368 + MIR SINE MIR 22 216 -46 2302 122 0 0 chr3 188520802 188521114 -29516044 + AluSx SINE Alu 1 312 0 605 243 105 22 chr3 188521222 188521403 -29515755 - MIR SINE MIR -18 244 49 475 224 12 145 chr3 188521583 188521838 -29515320 - MIR SINE MIR -32 230 10 382 219 164 34 chr3 188521900 188522046 -29515112 - MER103 DNA DNA 0 166 2 1985 130 3 13 chr3 188522070 188522369 -29514789 - AluSx SINE Alu -16 296 1 680 243 69 24 chr3 188522394 188522641 -29514517 + MER93b LTR ERV1 20 277 -96 288 325 41 0 chr3 188522885 188523024 -29514134 + MIR3 SINE MIR 34 179 -51 2459 95 0 0 chr3 188523111 188523417 -29513741 - AluSx SINE Alu -6 306 1 200 338 94 25 chr3 188524235 188524395 -29512763 - L2 LINE L2 -159 3113 2943 493 163 7 113 chr3 188524668 188524723 -29512435 - MER94 DNA DNA -5 129 70 1764 186 14 3 chr3 188524723 188525018 -29512140 + AluJb SINE Alu 1 298 -14 493 163 7 113 chr3 188525018 188525103 -29512055 - MER94 DNA DNA -64 70 4 1172 158 183 8 chr3 188525665 188525911 -29511247 - AluJb SINE Alu -13 289 1 205 264 0 19 chr3 188525940 188525993 -29511165 + MIR SINE MIR 106 157 -105 822 286 203 26 chr3 188526224 188526590 -29510568 + L2 LINE L2 2212 2512 -802 2111 108 0 51 chr3 188526590 188526904 -29510254 - AluSg SINE Alu -12 298 1 822 286 203 26 chr3 188526904 188527188 -29509970 + L2 LINE L2 2512 2977 -337 531 332 78 0 chr3 188527244 188527449 -29509709 + MIR SINE MIR 32 252 -10 213 306 69 14 chr3 188527622 188527694 -29509464 + L2 LINE L2 3136 3211 -61 2017 139 0 29 chr3 188527847 188528163 -29508995 + AluJo SINE Alu 6 312 0 492 178 50 0 chr3 188528264 188528365 -29508793 + U6 snRNA snRNA 1 106 -1 2253 95 3 13 chr3 188528383 188528687 -29508471 + AluSx SINE Alu 1 301 -11 254 218 43 64 chr3 188529447 188529647 -29507511 + MSTB1 LTR MaLR 2 197 -235 450 200 129 36 chr3 188529649 188529789 -29507369 + FRAM SINE Alu 1 152 -24 738 147 51 13 chr3 188529803 188529960 -29507198 + MSTB1 LTR MaLR 197 359 -73 2035 154 0 0 chr3 188529963 188530256 -29506902 + AluSx SINE Alu 1 293 -19 986 167 7 0 chr3 188530259 188530409 -29506749 - FRAM SINE Alu -15 151 1 1588 174 3 65 chr3 188530498 188530820 -29506338 + AluJo SINE Alu 1 302 -10 1663 167 7 23 chr3 188531149 188531449 -29505709 - AluJb SINE Alu -17 295 1 615 327 87 65 chr3 188531473 188532626 -29504532 - L2 LINE L2 -56 3216 2023 186 320 149 22 chr3 188532713 188532894 -29504264 - L2 LINE L2 -2409 905 702 183 376 24 68 chr3 188533064 188533202 -29503956 + L2 LINE L2 2555 2679 -635 2253 99 0 0 chr3 188533202 188533504 -29503654 - AluSx SINE Alu -10 302 1 183 376 24 68 chr3 188533504 188533615 -29503543 + L2 LINE L2 2679 2793 -521 2348 68 0 46 chr3 188533645 188533970 -29503188 - AluY SINE Alu -1 310 1 233 91 0 0 chr3 188534019 188534052 -29503106 - Alu SINE Alu -27 275 243 574 198 0 0 chr3 188534055 188534151 -29503007 - AluJ/FLAM SINE Alu -216 96 1 349 280 130 0 chr3 188534523 188534623 -29502535 + L2 LINE L2 3200 3312 -1 380 243 164 7 chr3 188534967 188535119 -29502039 + MIR SINE MIR 48 223 -39 381 352 92 0 chr3 188535153 188535295 -29501863 + L2 LINE L2 3117 3271 -1 914 256 96 0 chr3 188537420 188537650 -29499508 + MIR SINE MIR 9 260 -2 2404 74 7 0 chr3 188538208 188538504 -29498654 - AluSq SINE Alu -15 298 1 1709 148 11 28 chr3 188539180 188539464 -29497694 - AluJo SINE Alu -23 289 11 379 292 80 0 chr3 188540322 188540459 -29496699 - MIR SINE MIR -18 244 97 1813 175 36 31 chr3 188541930 188542318 -29494840 - MLT1B LTR MaLR 0 390 1 28 0 0 0 chr3 188542364 188542392 -29494766 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr3 188543007 188543036 -29494122 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr3 188543273 188543317 -29493841 + AT_rich Low_complexity Low_complexity 1 44 0 2392 74 3 0 chr3 188543491 188543789 -29493369 - AluY SINE Alu -11 300 2 31 68 0 0 chr3 188543933 188543992 -29493166 + AT_rich Low_complexity Low_complexity 1 59 0 1691 115 0 12 chr3 188543992 188544235 -29492923 - AluSx SINE Alu -72 240 1 21 95 0 0 chr3 188544467 188544530 -29492628 + AT_rich Low_complexity Low_complexity 1 63 0 264 30 0 0 chr3 188544544 188544577 -29492581 + (CA)n Simple_repeat Simple_repeat 2 34 0 2484 62 3 10 chr3 188545510 188545819 -29491339 - AluY SINE Alu -4 307 1 835 141 0 22 chr3 188546522 188546657 -29490501 - FLAM_C SINE Alu -1 132 1 2344 94 0 0 chr3 188546788 188547096 -29490062 - AluSx SINE Alu -4 308 1 29 0 0 0 chr3 188547906 188547935 -29489223 + AT_rich Low_complexity Low_complexity 1 29 0 408 257 149 17 chr3 188549982 188550157 -29487001 - L2 LINE L2 -6 3307 3110 495 227 31 0 chr3 188550804 188550901 -29486257 - MIR SINE MIR -110 152 53 442 313 272 25 chr3 188550997 188551643 -29485515 + L2 LINE L2 1600 2405 -909 574 343 139 24 chr3 188551663 188552220 -29484938 + L2 LINE L2 2601 3298 -15 809 120 0 0 chr3 188552347 188552455 -29484703 - AluY SINE Alu -203 108 1 207 292 56 14 chr3 188552468 188552540 -29484618 + MIR3 SINE MIR 125 199 -9 33 0 0 0 chr3 188552791 188552824 -29484334 + AT_rich Low_complexity Low_complexity 1 33 0 2151 131 3 0 chr3 188552943 188553241 -29483917 + AluSx SINE Alu 1 299 -13 2049 134 26 0 chr3 188554272 188554577 -29482581 + AluSq SINE Alu 1 313 0 696 181 31 0 chr3 188555526 188555653 -29481505 - FLAM_C SINE Alu 0 133 3 303 284 86 0 chr3 188556185 188556266 -29480892 + L2 LINE L2 3183 3270 -2 379 208 10 42 chr3 188556276 188556372 -29480786 - MIR SINE MIR -10 252 160 927 229 127 47 chr3 188556552 188556953 -29480205 - L1ME LINE L1 -452 5712 5280 210 269 15 37 chr3 188556967 188557101 -29480057 + (TA)n Simple_repeat Simple_repeat 1 131 0 3299 239 67 19 chr3 188557103 188557902 -29479256 - L1ME LINE L1 -905 5241 4359 1738 144 52 24 chr3 188557902 188558070 -29479088 - AluJb SINE Alu -13 299 118 216 67 0 0 chr3 188558070 188558100 -29479058 + (TTG)n Simple_repeat Simple_repeat 1 30 0 1738 144 52 24 chr3 188558100 188558222 -29478936 - AluJb SINE Alu -194 118 1 3299 239 67 19 chr3 188558222 188558663 -29478495 - L1ME LINE L1 -1787 4359 3941 2524 50 0 0 chr3 188558686 188558988 -29478170 - AluY SINE Alu -9 302 1 1982 151 35 13 chr3 188558989 188559361 -29477797 - L1MC1 LINE L1 -6 6327 5948 521 251 12 0 chr3 188559606 188559773 -29477385 + L1 LINE L1 2219 2387 -3759 458 179 8 43 chr3 188559795 188559843 -29477315 - L1ME LINE L1 -2403 3743 3695 2746 16 0 0 chr3 188559843 188560146 -29477012 - AluY SINE Alu -8 303 1 458 179 8 43 chr3 188560146 188560214 -29476944 - L1ME LINE L1 -2451 3695 3631 550 84 0 0 chr3 188560218 188560289 -29476869 + AluSp/q SINE Alu 208 278 -35 324 0 0 0 chr3 188560293 188560329 -29476829 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 304 314 0 0 chr3 188560330 188560435 -29476723 + L1 LINE L1 3749 3853 -2293 1522 127 0 9 chr3 188560436 188560568 -29476590 + AluSg SINE Alu 1 132 -178 192 40 0 0 chr3 188560568 188560593 -29476565 + (CA)n Simple_repeat Simple_repeat 2 26 0 1522 127 0 9 chr3 188560593 188560673 -29476485 + AluSg SINE Alu 132 211 -99 1425 112 5 0 chr3 188560692 188560916 -29476242 - HSMAR2 DNA Mariner -1 1301 1077 2204 114 0 13 chr3 188560916 188561232 -29475926 - AluSx SINE Alu 0 312 1 680 243 69 24 chr3 188561257 188561504 -29475654 + MER93b LTR ERV1 20 277 -96 288 325 41 0 chr3 188561748 188561887 -29475271 + MIR3 SINE MIR 34 179 -51 2476 94 0 0 chr3 188561974 188562282 -29474876 - AluSx SINE Alu -4 308 1 200 338 94 25 chr3 188563100 188563260 -29473898 - L2 LINE L2 -159 3113 2943 493 163 7 113 chr3 188563533 188563588 -29473570 - MER94 DNA DNA -5 129 70 1776 183 14 3 chr3 188563588 188563883 -29473275 + AluJb SINE Alu 1 298 -14 493 163 7 113 chr3 188563883 188563968 -29473190 - MER94 DNA DNA -64 70 4 1159 158 183 8 chr3 188564530 188564776 -29472382 - AluJo SINE Alu -13 289 1 205 264 0 19 chr3 188564805 188564858 -29472300 + MIR SINE MIR 106 157 -105 838 287 197 29 chr3 188565089 188565460 -29471698 + L2 LINE L2 2212 2519 -795 2178 108 0 41 chr3 188565460 188565776 -29471382 - AluSg SINE Alu -7 303 1 838 287 197 29 chr3 188565776 188566060 -29471098 + L2 LINE L2 2519 2977 -337 531 332 78 0 chr3 188566116 188566321 -29470837 + MIR SINE MIR 32 252 -10 213 306 69 14 chr3 188566494 188566566 -29470592 + L2 LINE L2 3136 3211 -61 2017 139 0 29 chr3 188566719 188567035 -29470123 + AluJo SINE Alu 6 312 0 492 178 50 0 chr3 188567136 188567237 -29469921 + U6 snRNA snRNA 1 106 -1 2257 97 3 13 chr3 188567255 188567563 -29469595 + AluSx SINE Alu 1 305 -7 278 65 0 22 chr3 188568556 188568602 -29468556 + (CA)n Simple_repeat Simple_repeat 2 46 0 1504 173 72 4 chr3 188568802 188569079 -29468079 + AluJo SINE Alu 1 296 -16 181 279 0 0 chr3 188569774 188569817 -29467341 - L2 LINE L2 -9 3304 3262 1903 157 0 28 chr3 188570316 188570635 -29466523 + AluJb SINE Alu 1 310 -2 1495 94 5 0 chr3 188570997 188571198 -29465960 - AluSg/x SINE Alu -2 310 109 2817 13 3 0 chr3 188571198 188571504 -29465654 - AluY SINE Alu -4 307 1 518 272 129 29 chr3 188571519 188571898 -29465260 - L1M4 LINE L1 -2416 3730 3314 1186 179 10 86 chr3 188571898 188572012 -29465146 + AluJo SINE Alu 1 122 -180 2349 75 0 47 chr3 188572012 188572330 -29464828 + AluY SINE Alu 6 308 -3 1186 179 10 86 chr3 188572330 188572364 -29464794 + AluJo SINE Alu 122 157 -145 1943 132 0 0 chr3 188572364 188572629 -29464529 + AluSq SINE Alu 1 265 -48 1186 179 10 86 chr3 188572629 188572644 -29464514 + AluJo SINE Alu 157 172 -130 185 83 28 0 chr3 188572644 188572680 -29464478 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1186 179 10 86 chr3 188572680 188572827 -29464331 + AluJo SINE Alu 172 289 -13 731 204 0 19 chr3 188572905 188573062 -29464096 - AluJb SINE Alu -2 310 157 288 225 12 0 chr3 188573082 188573162 -29463996 - L1M4 LINE L1 -2888 3258 3178 755 123 53 6 chr3 188623791 188623961 -29413197 + GA-rich Low_complexity Low_complexity 3 180 0 246 156 0 0 chr3 188623978 188624023 -29413135 + GA-rich Low_complexity Low_complexity 1 45 0 24 67 0 0 chr3 188624760 188624805 -29412353 + AT_rich Low_complexity Low_complexity 1 45 0 183 337 133 46 chr3 188625520 188625716 -29411442 + L2 LINE L2 2624 2836 -478 273 304 0 25 chr3 188625939 188626018 -29411140 + L2 LINE L2 3221 3297 -16 29 70 0 0 chr3 188626720 188626777 -29410381 + AT_rich Low_complexity Low_complexity 1 57 0 309 212 45 0 chr3 188627012 188627078 -29410080 - MIR SINE MIR -1 261 193 248 325 26 34 chr3 188627214 188627331 -29409827 - MIR SINE MIR -66 196 81 204 326 86 46 chr3 188627437 188627612 -29409546 - L2 LINE L2 -13 3300 3119 2166 135 48 22 chr3 188627778 188628133 -29409025 + THE1B LTR MaLR 1 364 0 11983 81 9 4 chr3 188628133 188629705 -29407453 + THE1B-int LTR MaLR 1 1580 0 2067 136 51 20 chr3 188629705 188630058 -29407100 + THE1B LTR MaLR 1 364 0 1085 217 14 41 chr3 188630322 188630612 -29406546 + MLT1A1 LTR MaLR 1 282 -83 479 307 0 29 chr3 188631601 188631738 -29405420 + MIR SINE MIR 20 152 -110 204 40 0 0 chr3 188631810 188631835 -29405323 + (T)n Simple_repeat Simple_repeat 1 25 0 214 313 62 0 chr3 188631948 188632028 -29405130 + L3b LINE CR1 1275 1359 -224 226 242 0 76 chr3 188632584 188632650 -29404508 + L2 LINE L2 3249 3309 -4 209 303 101 56 chr3 188633772 188633950 -29403208 + L2 LINE L2 2703 2888 -426 * 291 309 0 12 chr3 188633926 188634010 -29403148 - L2 LINE L2 -2 3270 3188 2233 113 23 55 chr3 188634306 188634489 -29402669 + MLT1B LTR MaLR 1 188 -202 2077 100 31 3 chr3 188634489 188634778 -29402380 + AluSx SINE Alu 1 297 -15 2233 113 23 55 chr3 188634778 188634993 -29402165 + MLT1B LTR MaLR 188 386 -4 453 207 136 50 chr3 188635472 188635612 -29401546 - MIR SINE MIR -53 209 58 665 72 0 10 chr3 188636209 188636306 -29400852 + (TTCC)n Simple_repeat Simple_repeat 4 99 0 371 171 13 0 chr3 188636538 188636614 -29400544 + (TATG)n Simple_repeat Simple_repeat 3 79 0 2152 125 0 10 chr3 188637576 188637889 -29399269 - AluSq SINE Alu -3 310 1 197 33 33 0 chr3 188637906 188637936 -29399222 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 293 287 24 18 chr3 188639198 188639362 -29397796 + C-rich Low_complexity Low_complexity 5 169 0 2379 114 10 36 chr3 188640912 188641297 -29395861 + THE1C LTR MaLR 1 375 0 1890 155 29 0 chr3 188641476 188641856 -29395302 - Charlie5 DNA MER1_type 0 2624 2234 408 176 8 56 chr3 188641853 188641978 -29395180 - Charlie5 DNA MER1_type -2485 127 9 * 382 288 108 0 chr3 188642108 188642247 -29394911 + MIR SINE MIR 30 183 -79 199 238 19 6 chr3 188642334 188642439 -29394719 - MIR SINE MIR -65 197 28 302 182 15 0 chr3 188645791 188645857 -29391301 + (TA)n Simple_repeat Simple_repeat 1 67 0 26 50 0 0 chr3 188646725 188646765 -29390393 + AT_rich Low_complexity Low_complexity 1 40 0 275 245 43 53 chr3 188646792 188646980 -29390178 - L1ME4a LINE L1 -71 6050 5865 1459 184 61 6 chr3 188646993 188647319 -29389839 - L1MA7 LINE L1 0 6291 5948 2946 184 55 12 chr3 188647336 188647938 -29389220 - L1M2 LINE L1 -6210 639 12 3401 184 8 0 chr3 188647953 188648857 -29388301 - L1MA7 LINE L1 -675 5616 4705 426 367 29 54 chr3 188649426 188649666 -29387492 + L2 LINE L2 2992 3225 -47 513 316 0 51 chr3 188649877 188650073 -29387085 + MIR3 SINE MIR 15 200 -8 1945 188 22 6 chr3 188651062 188651418 -29385740 + MLT1A1 LTR MaLR 1 362 -3 2408 172 65 56 chr3 188651487 188651765 -29385393 - L1MD1 LINE L1 -3 6633 6359 1871 166 7 3 chr3 188651765 188652072 -29385086 - AluSx SINE Alu -4 308 1 2408 172 65 56 chr3 188652072 188652434 -29384724 - L1MD1 LINE L1 -277 6359 5987 1039 118 29 37 chr3 188652439 188652642 -29384516 - LTR8 LTR ERV1 -207 515 310 2474 69 0 3 chr3 188652652 188652957 -29384201 - AluY SINE Alu -4 307 4 1863 201 41 26 chr3 188652957 188653810 -29383348 - L1MD1 LINE L1 -653 5983 5128 6215 227 92 9 chr3 188653814 188656312 -29380846 - L1MD1 LINE L1 -1573 4967 2259 552 207 142 0 chr3 188656336 188656505 -29380653 - L1MD1 LINE L1 -4319 2221 2029 292 307 69 23 chr3 188656745 188656963 -29380195 + Tigger1 DNA MER2_type 941 1168 -1250 23 0 0 0 chr3 188658036 188658059 -29379099 + AT_rich Low_complexity Low_complexity 1 23 0 1977 89 0 114 chr3 188658250 188658574 -29378584 + AluSc SINE Alu 14 300 -9 1689 141 146 29 chr3 188658755 188659138 -29378020 - MSTA LTR MaLR 0 428 1 684 292 42 19 chr3 188659671 188659979 -29377179 - L1ME LINE L1 -329 5792 5478 379 248 94 27 chr3 188660186 188660306 -29376852 - MIR SINE MIR -29 233 100 1314 151 40 138 chr3 188660306 188660711 -29376447 + MLT1A1 LTR MaLR 1 365 0 379 248 94 27 chr3 188660711 188660739 -29376419 - MIR SINE MIR -162 100 75 361 333 83 44 chr3 188660983 188661163 -29375995 + MIR SINE MIR 21 207 -55 181 164 89 164 chr3 188661515 188661661 -29375497 + MIR SINE MIR 92 226 -36 402 286 23 51 chr3 188662538 188662891 -29374267 + L1MC4 LINE L1 4900 5242 -904 1129 221 87 37 chr3 188662937 188664372 -29372786 + L1MC4 LINE L1 5327 6617 -1191 468 286 72 116 chr3 188665752 188666252 -29370906 - L2 LINE L2 -594 2720 2243 210 321 66 66 chr3 188666344 188666587 -29370571 - L2 LINE L2 -1075 2239 1997 1055 240 196 14 chr3 188666713 188667208 -29369950 + L1MC4a LINE L1 7059 7643 -165 249 151 0 57 chr3 188667208 188667261 -29369897 - MLT1F1 LTR MaLR -450 117 68 463 330 62 89 chr3 188667336 188667979 -29369179 - L2 LINE L2 -913 2401 1776 261 364 107 0 chr3 188669333 188669473 -29367685 + L2 LINE L2 3118 3272 0 2674 118 39 7 chr3 188669832 188670247 -29366911 + MSTA LTR MaLR 1 428 0 209 270 169 0 chr3 188670267 188670356 -29366802 - MIR SINE MIR 0 262 159 1279 204 37 71 chr3 188670360 188670738 -29366420 + MLT1A2 LTR MaLR 6 370 -4 379 278 22 111 chr3 188670740 188670893 -29366265 - MIR SINE MIR -96 166 30 1742 156 31 38 chr3 188670893 188671181 -29365977 - AluJo SINE Alu -26 286 1 379 278 22 111 chr3 188671181 188671207 -29365951 - MIR SINE MIR -232 30 3 373 198 178 10 chr3 188671236 188671337 -29365821 + MER63 DNA MER1_type 5 748 -88 1352 186 37 61 chr3 188671410 188671706 -29365452 - AluJo SINE Alu -23 289 1 286 241 0 0 chr3 188671712 188671770 -29365388 + MER63 DNA MER1_type 1005 1062 0 213 302 0 0 chr3 188671817 188671870 -29365288 + L2 LINE L2 3193 3245 -68 218 268 159 29 chr3 188671887 188672025 -29365133 - MIR SINE MIR -13 249 94 526 304 0 0 chr3 188672854 188672992 -29364166 - MER91B DNA MER1_type -33 157 20 451 270 72 20 chr3 188674112 188674264 -29362894 - MIR SINE MIR 0 262 103 4140 121 39 43 chr3 188674266 188675639 -29361519 + pTR5 LTR ERV1 748 2438 0 198 0 0 0 chr3 188676068 188676090 -29361068 + (A)n Simple_repeat Simple_repeat 1 22 0 575 355 52 15 chr3 188676360 188676690 -29360468 - L2 LINE L2 -429 2885 2544 1302 231 101 48 chr3 188677947 188678423 -29358735 - MLT1D LTR MaLR -4 501 1 202 317 110 0 chr3 188680061 188680143 -29357015 - L3 LINE CR1 -56 1521 1431 1066 188 23 23 chr3 188680147 188680365 -29356793 - MER58A DNA MER1_type -6 218 1 214 303 141 92 chr3 188680504 188680689 -29356469 + L2 LINE L2 3079 3272 0 849 177 113 68 chr3 188680830 188681140 -29356018 + MER33 DNA MER1_type 1 324 0 1116 262 144 3 chr3 188681143 188681490 -29355668 - MSTD LTR MaLR 0 396 1 2226 121 0 0 chr3 188681869 188682175 -29354983 - AluSx SINE Alu -6 306 1 417 361 55 55 chr3 188682519 188682849 -29354309 + L2 LINE L2 2943 3272 0 350 298 143 19 chr3 188684754 188684915 -29352243 + MIR SINE MIR 32 212 -50 2368 107 0 0 chr3 188685431 188685740 -29351418 + AluSc SINE Alu 1 309 0 3197 203 86 81 chr3 188686635 188687059 -29350099 - L1MDa LINE L1 -4667 1873 1453 2147 113 10 7 chr3 188687059 188687368 -29349790 - AluSg SINE Alu 0 310 1 3197 203 86 81 chr3 188687368 188687632 -29349526 - L1MDa LINE L1 -5087 1453 1192 2047 152 0 3 chr3 188687632 188687928 -29349230 - AluSx SINE Alu -17 295 1 3197 203 86 81 chr3 188687928 188688467 -29348691 - L1MDa LINE L1 -5348 1192 639 2171 110 0 13 chr3 188688471 188688770 -29348388 - AluSx SINE Alu -17 295 1 295 282 0 0 chr3 188688770 188688848 -29348310 - L1MDa LINE L1 -6444 96 19 264 247 43 21 chr3 188690532 188690625 -29346533 + MIR SINE MIR 124 218 -44 395 296 226 10 chr3 188693069 188693162 -29343996 + MIR SINE MIR 20 92 -170 1688 89 0 9 chr3 188693162 188693387 -29343771 - AluY SINE Alu -5 306 84 395 296 226 10 chr3 188693387 188693492 -29343666 + MIR SINE MIR 92 261 -1 348 279 229 0 chr3 188693532 188693672 -29343486 - MIR3 SINE MIR -21 187 16 589 261 208 43 chr3 188693734 188694001 -29343157 + L2 LINE L2 2548 2770 -543 2378 95 0 7 chr3 188694001 188694305 -29342853 - AluSq SINE Alu -11 302 1 589 261 208 43 chr3 188694305 188694594 -29342564 + L2 LINE L2 2770 3313 0 25 0 0 0 chr3 188695265 188695290 -29341868 + AT_rich Low_complexity Low_complexity 1 25 0 567 244 70 65 chr3 188695718 188696244 -29340914 + MLT1F1 LTR MaLR 41 560 -7 2482 74 0 0 chr3 188696520 188696819 -29340339 - AluSg SINE Alu -11 299 1 704 245 80 5 chr3 188696820 188697020 -29340138 - MER58A DNA MER1_type -9 215 1 210 358 173 12 chr3 188697067 188697321 -29339837 + L2 LINE L2 2013 2307 -1007 1121 241 104 78 chr3 188697355 188698037 -29339121 + LTR50 LTR ERVL 2 787 -8 475 340 24 56 chr3 188698058 188698399 -29338759 + L2 LINE L2 2376 2705 -609 226 330 21 43 chr3 188698516 188698610 -29338548 + L2 LINE L2 3171 3262 -10 2040 153 84 10 chr3 188698639 188699043 -29338115 + Tigger2a DNA MER2_type 1 434 0 451 339 65 0 chr3 188702898 188703066 -29334092 + MER91A DNA MER1_type 15 193 -3 189 249 73 136 chr3 188703682 188703859 -29333299 + MER5A DNA MER1_type 22 187 -2 2108 126 0 52 chr3 188705863 188706189 -29330969 - AluSx SINE Alu -3 309 1 338 220 88 25 chr3 188706337 188706455 -29330703 + MIR SINE MIR 64 192 -61 778 158 20 0 chr3 188707232 188707378 -29329780 - BC200 scRNA scRNA -31 169 21 384 276 26 51 chr3 188707927 188708083 -29329075 - MIR SINE MIR -42 220 69 2097 144 3 6 chr3 188708835 188709148 -29328010 + AluSx SINE Alu 1 312 0 222 333 11 33 chr3 188710179 188710362 -29326796 + GA-rich Low_complexity Low_complexity 2 180 0 * 224 348 0 0 chr3 188710291 188710380 -29326778 + G-rich Low_complexity Low_complexity 1 89 0 2255 121 0 0 chr3 188712444 188712741 -29324417 - AluSq SINE Alu -16 297 1 731 278 40 14 chr3 188712980 188713203 -29323955 - MIR SINE MIR -2 260 32 261 350 10 10 chr3 188713277 188713377 -29323781 - MIR SINE MIR -118 144 45 365 327 120 5 chr3 188714122 188714339 -29322819 - MIR SINE MIR -8 254 13 2250 119 3 3 chr3 188714514 188714824 -29322334 - AluSx SINE Alu -2 310 1 21 0 0 0 chr3 188715838 188715859 -29321299 + AT_rich Low_complexity Low_complexity 1 21 0 432 373 40 45 chr3 188716209 188716831 -29320327 + L2 LINE L2 2090 2708 -606 2271 73 21 0 chr3 188717174 188717462 -29319696 - AluY SINE Alu -7 304 11 2088 92 25 3 chr3 188717462 188717744 -29319414 - AluSq SINE Alu -25 288 1 1748 185 0 28 chr3 188717849 188718168 -29318990 - AluJo SINE Alu -2 310 1 255 284 57 57 chr3 188719944 188720085 -29317073 + MLT1K LTR MaLR 131 271 -317 21 36 0 0 chr3 188720684 188720712 -29316446 + AT_rich Low_complexity Low_complexity 1 28 0 637 238 53 13 chr3 188721804 188721955 -29315203 + FAM SINE Alu 1 157 -18 598 293 77 26 chr3 188722402 188722675 -29314483 + L1MEd LINE L1 457 743 -5376 769 241 29 38 chr3 188722679 188723057 -29314101 + MER21B LTR ERV1 1 412 -451 957 237 102 25 chr3 188723511 188723615 -29313543 + MER21B LTR ERV1 507 602 -261 1828 134 0 11 chr3 188723615 188723918 -29313240 - AluSx SINE Alu 0 325 26 957 237 102 25 chr3 188723918 188724086 -29313072 + MER21B LTR ERV1 602 801 -62 5170 240 60 23 chr3 188724116 188725488 -29311670 + MER21B-int LTR ERV1 3 1424 -2767 4221 179 14 24 chr3 188725490 188726274 -29310884 + LTR39 LTR ERV1 1 776 -7 799 223 79 10 chr3 188726279 188726481 -29310677 + MER21B-int LTR ERV1 1422 1637 -2554 2258 232 74 69 chr3 188726594 188727365 -29309793 + MER21B LTR ERV1 8 782 -81 361 238 74 16 chr3 188727365 188727487 -29309671 + L1MEd LINE L1 740 868 -5251 379 84 37 0 chr3 188727522 188727626 -29309532 + L1PA13 LINE L1 5946 6155 -8 2041 116 17 7 chr3 188727637 188727939 -29309219 + AluSx SINE Alu 1 305 -7 359 309 102 29 chr3 188727956 188728640 -29308518 + L1MEd LINE L1 925 1714 -776 295 242 150 33 chr3 188729039 188729159 -29307999 - L2 LINE L2 -10 3303 3170 669 296 90 30 chr3 188729220 188730163 -29306995 + L1MEd LINE L1 2183 3182 -2947 271 306 75 6 chr3 188730175 188730335 -29306823 + L1MEd LINE L1 3951 4121 -2008 1936 123 0 0 chr3 188730434 188730695 -29306463 + AluSx SINE Alu 44 304 -8 4855 151 41 3 chr3 188730996 188731947 -29305211 + L1MB3 LINE L1 5195 6181 -2 13069 172 88 16 chr3 188732248 188734516 -29302642 + L1M1 LINE L1 1 2502 -5063 3007 50 5 0 chr3 188734516 188734892 -29302266 + L1PA8 LINE L1 5795 6172 0 13069 172 88 16 chr3 188734892 188735378 -29301780 + L1M1 LINE L1 2502 2952 -4613 1928 154 6 10 chr3 188735388 188735700 -29301458 - AluJo SINE Alu -1 311 1 265 61 0 0 chr3 188735700 188735733 -29301425 + L1M1 LINE L1 2940 2972 -4593 * 568 261 20 5 chr3 188735730 188735926 -29301232 + L1ME3A LINE L1 5781 5976 -198 26 0 0 0 chr3 188738329 188738355 -29298803 + AT_rich Low_complexity Low_complexity 1 26 0 848 213 61 35 chr3 188739304 188739499 -29297659 - MLT1J2 LTR MaLR -214 236 33 2510 85 0 0 chr3 188739499 188739805 -29297353 + AluSc SINE Alu 1 306 -3 848 213 61 35 chr3 188739805 188739839 -29297319 - MLT1J2 LTR MaLR -417 33 1 2318 132 22 0 chr3 188740944 188741300 -29295858 - THE1B LTR MaLR 0 364 1 301 292 170 12 chr3 188742573 188742744 -29294414 + MIR SINE MIR 50 247 -15 644 181 23 6 chr3 188743422 188743593 -29293565 + CT-rich Low_complexity Low_complexity 4 177 0 243 274 0 0 chr3 188743778 188743829 -29293329 - MIR3 SINE MIR -14 194 144 2036 124 7 0 chr3 188743865 188744155 -29293003 - AluSq SINE Alu -21 292 1 686 274 133 38 chr3 188744250 188744433 -29292725 + MLT1J2 LTR MaLR 41 205 -245 2175 117 3 3 chr3 188744433 188744740 -29292418 + AluSx SINE Alu 1 307 -5 686 274 133 38 chr3 188744740 188744924 -29292234 + MLT1J2 LTR MaLR 205 443 -7 200 301 14 14 chr3 188745062 188745135 -29292023 - MIR SINE MIR -40 222 150 25 0 0 0 chr3 188745759 188745784 -29291374 + AT_rich Low_complexity Low_complexity 1 25 0 2206 113 7 104 chr3 188747541 188747973 -29289185 - MLT1B LTR MaLR 0 390 1 426 337 49 19 chr3 188749034 188749239 -29287919 - MIR SINE MIR -50 212 2 873 70 0 2 chr3 188749567 188749822 -29287336 - AluSc SINE Alu 0 309 1 403 196 0 37 chr3 188751412 188751519 -29285639 - FAM SINE Alu 0 185 83 3152 126 11 0 chr3 188751531 188752001 -29285157 + MER1A DNA MER1_type 55 529 0 332 139 0 83 chr3 188752001 188752068 -29285090 - FRAM SINE Alu -80 86 26 358 252 98 16 chr3 188753716 188753839 -29283319 + MLT1H LTR MaLR 111 243 -306 276 237 82 52 chr3 188753936 188754033 -29283125 + MLT1H LTR MaLR 434 533 -16 590 197 41 16 chr3 188755492 188755614 -29281544 + L2 LINE L2 3189 3313 0 277 299 90 14 chr3 188756143 188756287 -29280871 + Charlie4 DNA MER1_type 677 831 -1130 181 301 147 44 chr3 188758744 188758880 -29278278 - MIR3 SINE MIR -49 159 10 309 280 32 0 chr3 188759090 188759183 -29277975 - U13 snRNA snRNA -2 102 7 22 0 0 0 chr3 188759702 188759724 -29277434 + AT_rich Low_complexity Low_complexity 1 22 0 438 297 84 60 chr3 188760029 188760362 -29276796 + L3 LINE CR1 1209 1549 -28 26 30 0 0 chr3 188760641 188760674 -29276484 + AT_rich Low_complexity Low_complexity 1 33 0 357 24 0 0 chr3 188761695 188761737 -29275421 + (TC)n Simple_repeat Simple_repeat 2 43 0 894 146 67 0 chr3 188762270 188762434 -29274724 - MER58B DNA MER1_type 0 341 167 2356 51 14 3 chr3 188762530 188762826 -29274332 + AluY SINE Alu 1 299 -12 216 164 19 67 chr3 188763615 188763719 -29273439 + (CGGGG)n Simple_repeat Simple_repeat 4 102 0 * 313 211 16 54 chr3 188763685 188763870 -29273288 + G-rich Low_complexity Low_complexity 3 180 0 820 304 15 55 chr3 188763955 188764359 -29272799 + L2 LINE L2 1712 2099 -1215 1362 258 76 17 chr3 188764374 188764936 -29272222 + L2 LINE L2 2593 3193 -120 806 234 5 54 chr3 188764941 188765146 -29272012 + MER58A DNA MER1_type 4 198 -26 684 161 17 8 chr3 188765146 188765264 -29271894 + L2 LINE L2 3190 3308 -5 26 30 0 0 chr3 188765279 188765312 -29271846 + AT_rich Low_complexity Low_complexity 1 33 0 402 300 184 37 chr3 188766151 188766478 -29270680 - L3b LINE CR1 -31 1552 1178 303 49 0 0 chr3 188766895 188766936 -29270222 + (CA)n Simple_repeat Simple_repeat 2 42 0 821 227 56 0 chr3 188767227 188767425 -29269733 - MER3 DNA MER1_type 0 209 1 190 315 19 0 chr3 188767458 188767512 -29269646 + L2 LINE L2 3209 3263 -9 222 287 400 7 chr3 188768012 188768162 -29268996 - MIR SINE MIR 0 262 54 238 293 77 72 chr3 188769660 188769841 -29267317 - L2 LINE L2 -238 3034 2853 237 264 50 33 chr3 188771570 188771691 -29265467 - MER20B DNA MER1_type -619 164 42 1959 112 22 4 chr3 188771814 188772081 -29265077 - AluSq SINE Alu -24 289 18 1079 251 12 8 chr3 188772624 188772879 -29264279 + MIR SINE MIR 1 256 -6 211 325 97 0 chr3 188773254 188773368 -29263790 + L2 LINE L2 3148 3272 0 429 230 26 44 chr3 188773371 188773484 -29263674 + L2 LINE L2 3197 3307 -6 198 323 0 0 chr3 188773744 188773809 -29263349 - L2 LINE L2 -1 3271 3207 389 221 87 71 chr3 188774229 188774356 -29262802 - MER94 DNA DNA -2 132 4 238 365 61 9 chr3 188774464 188774579 -29262579 + L2 LINE L2 3143 3263 -9 27 29 0 0 chr3 188775436 188775470 -29261688 + AT_rich Low_complexity Low_complexity 1 34 0 213 39 0 0 chr3 188777689 188777715 -29259443 + (TG)n Simple_repeat Simple_repeat 1 26 0 21 36 0 0 chr3 188777760 188777788 -29259370 + AT_rich Low_complexity Low_complexity 1 28 0 230 301 80 18 chr3 188777878 188778041 -29259117 - L1ME LINE L1 -208 5913 5741 446 288 77 68 chr3 188778078 188778429 -29258729 - L2 LINE L2 -957 2357 2004 959 321 51 102 chr3 188778921 188779654 -29257504 - L1MC4a LINE L1 0 7808 7138 27 29 0 0 chr3 188779654 188779688 -29257470 + AT_rich Low_complexity Low_complexity 1 34 0 7106 197 56 29 chr3 188779688 188782599 -29254559 - L1MC1 LINE L1 -6 6607 3610 2183 106 0 0 chr3 188782599 188782917 -29254241 - AluSx SINE Alu 0 318 1 7106 197 56 29 chr3 188782917 188783124 -29254034 - L1MC1 LINE L1 -3003 3610 3410 279 253 7 0 chr3 188783136 188783228 -29253930 - L1M4 LINE L1 -3525 2621 2525 1494 202 39 36 chr3 188783228 188783560 -29253598 + MLT1A1 LTR MaLR 33 365 0 6271 218 52 59 chr3 188783562 188785178 -29251980 - L1MC1 LINE L1 -4815 1611 7 1050 219 14 31 chr3 188785163 188785451 -29251707 - L1MD3 LINE L1 -804 7191 6909 * 337 333 77 80 chr3 188785502 188785838 -29251320 + L1ME LINE L1 180 514 -5605 459 311 58 47 chr3 188785839 188786676 -29250482 + L1ME LINE L1 4623 5476 -671 370 337 98 0 chr3 188786725 188786909 -29250249 + MIR SINE MIR 55 256 -6 588 271 11 67 chr3 188787067 188787323 -29249835 - MIR SINE MIR -17 245 6 237 375 62 18 chr3 188787856 188787968 -29249190 - L3 LINE CR1 -81 1496 1380 513 266 24 0 chr3 188788001 188788125 -29249033 - MIR SINE MIR -17 245 119 187 349 28 18 chr3 188788173 188788282 -29248876 - L3 LINE CR1 -298 1279 1170 2369 90 0 10 chr3 188788304 188788616 -29248542 + AluSc SINE Alu 1 309 0 23 0 0 0 chr3 188791857 188791880 -29245278 + AT_rich Low_complexity Low_complexity 1 23 0 24 85 0 0 chr3 188791940 188791999 -29245159 + AT_rich Low_complexity Low_complexity 1 59 0 980 300 59 25 chr3 188792410 188792966 -29244192 + L1PA12 LINE L1 10 584 -6997 1507 182 125 30 chr3 188792982 188793429 -29243729 - MER51A LTR ERV1 0 634 1 339 314 105 23 chr3 188793514 188793700 -29243458 + L1PA12 LINE L1 1698 1867 -5714 327 25 0 0 chr3 188793700 188793740 -29243418 + (TG)n Simple_repeat Simple_repeat 2 41 0 339 314 105 23 chr3 188793740 188793915 -29243243 + L1PA12 LINE L1 1867 2080 -5501 254 227 93 13 chr3 188794069 188794144 -29243014 + L1 LINE L1 786 866 -5983 3775 199 57 60 chr3 188794163 188794725 -29242433 + L1 LINE L1 4154 4716 -2132 273 132 0 0 chr3 188794725 188794763 -29242395 - 5S rRNA rRNA -83 38 1 3775 199 57 60 chr3 188794763 188795051 -29242107 + L1 LINE L1 4716 5040 -1808 1537 184 0 80 chr3 188795051 188795388 -29241770 - AluJo SINE Alu -1 311 2 3775 199 57 60 chr3 188795388 188795597 -29241561 + L1 LINE L1 5040 5248 -1600 3118 146 4 10 chr3 188795700 188796220 -29240938 + L1PA16 LINE L1 5642 6158 -8 407 271 28 117 chr3 188796274 188796376 -29240782 + MER102b DNA MER1_type 147 222 -1206 621 189 15 0 chr3 188796376 188796508 -29240650 - MER94 DNA DNA 0 134 1 407 271 28 117 chr3 188796508 188796619 -29240539 + MER102b DNA MER1_type 222 341 0 2172 131 0 0 chr3 188796671 188796983 -29240175 - AluSq SINE Alu 0 313 2 288 0 0 0 chr3 188797482 188797514 -29239644 + (TG)n Simple_repeat Simple_repeat 2 33 0 1913 146 10 7 chr3 188798353 188798648 -29238510 + AluSx SINE Alu 1 296 -16 325 198 148 20 chr3 188799125 188799226 -29237932 + MER63 DNA MER1_type 1 740 -96 286 253 0 36 chr3 188799228 188799311 -29237847 + MER63 DNA MER1_type 975 1054 -8 2256 87 0 3 chr3 188799891 188800177 -29236981 - AluSp SINE Alu -12 301 17 2321 78 17 3 chr3 188801631 188801926 -29235232 + AluSq SINE Alu 1 299 -14 243 301 24 12 chr3 188802266 188802349 -29234809 - L2 LINE L2 -20 3252 3169 423 0 0 0 chr3 188803340 188803387 -29233771 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 22 70 0 0 chr3 188804606 188804649 -29232509 + AT_rich Low_complexity Low_complexity 1 43 0 357 24 0 0 chr3 188804749 188804791 -29232367 + (TG)n Simple_repeat Simple_repeat 1 42 0 372 272 18 24 chr3 188805154 188805323 -29231835 - L1M4 LINE L1 -1522 4624 4457 235 322 7 7 chr3 188805429 188805572 -29231586 + (TA)n Simple_repeat Simple_repeat 2 144 0 413 224 248 32 chr3 188805572 188805697 -29231461 + MER5A DNA MER1_type 37 188 -1 22 0 0 0 chr3 188805776 188805798 -29231360 + AT_rich Low_complexity Low_complexity 1 22 0 841 230 21 49 chr3 188806225 188806512 -29230646 + LTR4 LTR ERV1 318 596 0 21202 147 13 4 chr3 188806512 188808395 -29228763 - L1P4 LINE L1 -570 5596 3732 207 0 0 0 chr3 188808395 188808418 -29228740 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 21202 147 13 4 chr3 188808418 188810416 -29226742 - L1P4 LINE L1 -2434 3732 1679 696 35 0 0 chr3 188810420 188810507 -29226651 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 2080 133 0 0 chr3 188810509 188810802 -29226356 - AluSc SINE Alu -14 295 3 214 370 25 8 chr3 188811027 188811146 -29226012 + L3 LINE CR1 1101 1221 -356 273 237 53 13 chr3 188811213 188811289 -29225869 - L2 LINE L2 0 3313 3235 295 324 190 9 chr3 188811316 188811532 -29225626 + L3 LINE CR1 1311 1565 -12 1097 171 36 5 chr3 188812482 188812675 -29224483 + MSTA LTR MaLR 1 199 -229 293 244 22 0 chr3 188812776 188812866 -29224292 + L1ME3A LINE L1 2671 2762 -3384 599 258 60 21 chr3 188812869 188813102 -29224056 + L1ME3A LINE L1 4648 4889 -1257 428 218 0 55 chr3 188813103 188813213 -29223945 + MSTB2 LTR MaLR 1 104 -292 986 140 0 0 chr3 188813247 188813390 -29223768 + AluSg/x SINE Alu 157 299 -13 910 191 33 66 chr3 188813390 188813631 -29223527 + MSTB2 LTR MaLR 225 457 0 2634 249 88 17 chr3 188813643 188814822 -29222336 + L1ME3A LINE L1 4895 6165 -5 25 91 0 0 chr3 188815186 188815241 -29221917 + AT_rich Low_complexity Low_complexity 1 55 0 21 36 0 0 chr3 188815994 188816022 -29221136 + AT_rich Low_complexity Low_complexity 1 28 0 577 290 113 30 chr3 188816058 188816555 -29220603 - L1M4 LINE L1 -2902 3244 2707 270 231 99 16 chr3 188816812 188816826 -29220332 - L1MA10 LINE L1 0 6334 6321 3078 291 84 28 chr3 188816826 188818759 -29218399 - L1ME1 LINE L1 -4 6162 4113 231 211 0 96 chr3 188819416 188819615 -29217543 + T-rich Low_complexity Low_complexity 1 180 0 1047 343 186 19 chr3 188819826 188820808 -29216350 + L3 LINE CR1 398 1543 -34 1486 255 99 13 chr3 188820837 188820994 -29216164 - LTR40a LTR ERVL 0 519 377 239 71 24 0 chr3 188820994 188821036 -29216122 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1486 255 99 13 chr3 188821036 188821352 -29215806 - LTR40a LTR ERVL -142 377 5 479 208 0 3 chr3 188821364 188821490 -29215668 - AluJb SINE Alu -14 298 138 465 103 0 0 chr3 188821642 188821710 -29215448 + (TCTA)n Simple_repeat Simple_repeat 4 71 0 4985 176 12 6 chr3 188821780 188822831 -29214327 + L1MB2 LINE L1 5111 6168 -3 363 306 0 19 chr3 188824361 188824469 -29212689 + L2 LINE L2 3203 3308 -5 26 0 0 0 chr3 188824745 188824771 -29212387 + AT_rich Low_complexity Low_complexity 1 26 0 2036 128 0 0 chr3 188825303 188825585 -29211573 - AluSx SINE Alu -30 282 1 195 306 32 0 chr3 188825665 188825727 -29211431 - L2 LINE L2 -4 3309 3246 4863 195 96 23 chr3 188827290 188828459 -29208699 + Charlie1a DNA MER1_type 2 1255 -200 286 342 38 22 chr3 188830295 188830479 -29206679 - MIR SINE MIR -50 212 26 242 167 0 42 chr3 188831535 188831583 -29205575 + CT-rich Low_complexity Low_complexity 3 48 0 1485 47 16 0 chr3 188833228 188833420 -29203738 + L1PA4 LINE L1 5959 6153 -2 245 258 90 0 chr3 188833582 188833671 -29203487 - MIR SINE MIR -112 150 54 662 187 2 42 chr3 188833671 188833856 -29203302 - L1MEc LINE L1 -3228 2987 2809 * 1845 257 86 117 chr3 188833852 188836392 -29200766 - L1MEc LINE L1 -3756 2459 67 268 319 0 32 chr3 188836503 188836597 -29200561 - MIR SINE MIR -170 92 2 325 295 95 63 chr3 188836621 188836811 -29200347 + L2 LINE L2 3118 3313 0 180 0 0 0 chr3 188836920 188836940 -29200218 + (TAAAAA)n Simple_repeat Simple_repeat 5 24 0 22 0 0 0 chr3 188837006 188837028 -29200130 + AT_rich Low_complexity Low_complexity 1 22 0 30 27 0 0 chr3 188840185 188840222 -29196936 + AT_rich Low_complexity Low_complexity 1 37 0 207 186 23 0 chr3 188841346 188841389 -29195769 - L2 LINE L2 -1 3312 3269 25 31 0 0 chr3 188841515 188841547 -29195611 + AT_rich Low_complexity Low_complexity 1 32 0 2122 113 3 0 chr3 188842121 188842423 -29194735 - AluY SINE Alu -8 303 1 978 110 0 7 chr3 188842423 188842559 -29194599 - AluSq/x SINE Alu -177 135 1 2002 128 3 7 chr3 188842736 188843026 -29194132 - AluSx SINE Alu -16 296 8 1727 132 0 69 chr3 188843996 188844323 -29192835 + AluSx SINE Alu 1 306 0 21 0 0 0 chr3 188844490 188844511 -29192647 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr3 188844986 188845021 -29192137 + AT_rich Low_complexity Low_complexity 1 35 0 460 215 37 22 chr3 188845027 188845162 -29191996 + L1MD2 LINE L1 2527 2663 -3483 3442 99 6 4 chr3 188845184 188845691 -29191467 + L1PA8A LINE L1 5620 6127 -4 627 215 31 6 chr3 188845703 188845866 -29191292 + L1MD2 LINE L1 2645 2811 -3335 * 3522 190 136 40 chr3 188845863 188846843 -29190315 + L1MD2 LINE L1 5283 6356 -3 372 314 6 32 chr3 188847176 188847332 -29189826 - HAL1b LINE L1 -657 691 540 1021 164 68 11 chr3 188847345 188847626 -29189532 + AluSq SINE Alu 2 298 -5 2245 90 0 6 chr3 188848202 188848514 -29188644 - AluY SINE Alu -1 310 1 203 213 43 0 chr3 188848739 188848786 -29188372 - MIR SINE MIR -200 62 14 816 212 71 18 chr3 188848835 188849061 -29188097 + MER5C DNA MER1_type 73 310 -14 357 262 89 108 chr3 188849240 188849732 -29187426 - L1ME4a LINE L1 -204 5917 5435 33 25 0 0 chr3 188849845 188849885 -29187273 + AT_rich Low_complexity Low_complexity 1 40 0 574 289 62 57 chr3 188850056 188850443 -29186715 - L1ME4a LINE L1 -2685 3461 3073 251 164 14 55 chr3 188850510 188850617 -29186541 + (CTTAT)n Simple_repeat Simple_repeat 1 102 0 279 0 0 0 chr3 188850934 188850965 -29186193 + (T)n Simple_repeat Simple_repeat 1 31 0 2227 107 0 0 chr3 188851076 188851375 -29185783 + AluSq SINE Alu 1 299 -14 24 0 0 0 chr3 188851434 188851458 -29185700 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr3 188851519 188851542 -29185616 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr3 188853146 188853169 -29183989 + (T)n Simple_repeat Simple_repeat 1 23 0 351 326 107 37 chr3 188853532 188853774 -29183384 - MIR SINE MIR -2 260 2 1940 127 0 26 chr3 188853818 188854125 -29183033 - MER1B DNA MER1_type 0 339 41 955 178 11 0 chr3 188854952 188855126 -29182032 - MER57A LTR ERV1 -3 400 225 2245 89 3 32 chr3 188855126 188855442 -29181716 + AluSx SINE Alu 1 307 -5 286 340 9 0 chr3 188856235 188856341 -29180817 + MER103 DNA DNA 58 164 -2 9315 208 43 20 chr3 188856535 188858285 -29178873 + L1M1 LINE L1 16 1725 -5840 2630 143 25 7 chr3 188858285 188858719 -29178439 + L1PA15 LINE L1 5724 6165 0 9315 208 43 20 chr3 188858719 188859651 -29177507 + L1M1 LINE L1 1725 3451 -4114 9098 190 20 54 chr3 188859654 188859931 -29177227 + L1M1 LINE L1 4268 4553 -3109 2576 48 0 0 chr3 188859931 188860241 -29176917 + AluY SINE Alu 1 310 -1 9098 190 20 54 chr3 188860241 188861215 -29175943 + L1M1 LINE L1 4553 5558 -2104 2093 146 0 0 chr3 188861215 188861516 -29175642 + AluSx SINE Alu 1 301 -11 9098 190 20 54 chr3 188861516 188863231 -29173927 + L1M1 LINE L1 5558 6919 -743 3686 148 7 0 chr3 188863207 188863800 -29173358 + L1PA16 LINE L1 6789 7385 -200 * 1174 153 5 16 chr3 188863800 188863989 -29173169 + THE1B LTR MaLR 1 187 -177 416 276 43 19 chr3 188864245 188864455 -29172703 + L1MA4 LINE L1 5258 5472 -833 4404 140 23 42 chr3 188864456 188865049 -29172109 + L1PA16 LINE L1 5369 5971 -195 2049 144 33 28 chr3 188865049 188865411 -29171747 + THE1B LTR MaLR 1 364 0 11260 96 14 6 chr3 188865411 188866978 -29170180 + THE1B-int LTR MaLR 1 1580 0 2192 112 38 44 chr3 188866978 188867344 -29169814 + THE1B LTR MaLR 1 364 0 4404 140 23 42 chr3 188867344 188867417 -29169741 + L1PA16 LINE L1 5969 6042 -124 1772 135 19 0 chr3 188867417 188867683 -29169475 + AluSx SINE Alu 42 312 0 4404 140 23 42 chr3 188867683 188867826 -29169332 + L1PA16 LINE L1 6042 6166 0 4350 142 28 23 chr3 188867902 188868739 -29168419 + L1MA4 LINE L1 5460 6300 0 204 405 13 0 chr3 188869734 188869813 -29167345 - MIR SINE MIR -118 144 65 588 248 114 49 chr3 188870691 188870937 -29166221 - MIR SINE MIR 0 262 1 23 54 0 0 chr3 188872239 188872276 -29164882 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr3 188872511 188872533 -29164625 + AT_rich Low_complexity Low_complexity 1 22 0 339 171 146 0 chr3 188872594 188872676 -29164482 + MER53 DNA DNA 1 94 -95 300 273 77 38 chr3 188874452 188874661 -29162497 - L1M4 LINE L1 -2055 4091 3875 1908 263 69 62 chr3 188874803 188875483 -29161675 - MER115 DNA AcHobo 0 693 9 510 238 49 21 chr3 188875523 188875666 -29161492 + L2 LINE L2 3166 3312 -1 22201 129 10 11 chr3 188876153 188878632 -29158526 - L1PA10 LINE L1 -11 6157 3684 207 0 0 0 chr3 188878632 188878655 -29158503 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 22201 129 10 11 chr3 188878655 188880659 -29156499 - L1PA10 LINE L1 -2484 3684 1679 2149 112 0 0 chr3 188880663 188881045 -29156113 - AluSc SINE Alu 0 384 3 214 370 25 8 chr3 188881269 188881388 -29155770 + L3 LINE CR1 1101 1221 -356 234 239 30 15 chr3 188881455 188881522 -29155636 - L2 LINE L2 0 3313 3246 295 324 190 9 chr3 188881560 188881776 -29155382 + L3 LINE CR1 1311 1565 -12 2333 159 47 2 chr3 188882726 188883135 -29154023 + MSTA LTR MaLR 1 427 -1 193 256 0 0 chr3 188883212 188883251 -29153907 - MIR SINE MIR -113 149 111 1845 226 48 23 chr3 188884966 188885408 -29151750 + LTR40b LTR ERVL 10 462 0 1746 196 115 31 chr3 188885465 188885926 -29151232 + MLT1D LTR MaLR 1 626 0 333 0 0 0 chr3 188886167 188886204 -29150954 + (CA)n Simple_repeat Simple_repeat 2 38 0 365 330 45 0 chr3 188886557 188886669 -29150489 + L2 LINE L2 3150 3266 -6 728 262 74 18 chr3 188888157 188888386 -29148772 + MIR SINE MIR 11 252 -10 27 0 0 0 chr3 188889224 188889251 -29147907 + AT_rich Low_complexity Low_complexity 1 27 0 535 277 84 61 chr3 188889492 188890019 -29147139 + L1ME LINE L1 5287 5828 -334 13892 148 29 35 chr3 188890099 188892069 -29145089 + Tigger7 DNA MER2_type 1 1954 -533 225 119 0 0 chr3 188892069 188892111 -29145047 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 13892 148 29 35 chr3 188892111 188892642 -29144516 + Tigger7 DNA MER2_type 1954 2487 0 22 70 0 0 chr3 188893512 188893555 -29143603 + AT_rich Low_complexity Low_complexity 1 43 0 432 0 0 0 chr3 188893787 188893835 -29143323 + (CA)n Simple_repeat Simple_repeat 1 48 0 237 345 62 23 chr3 188894434 188894611 -29142547 + L2 LINE L2 256 439 -2875 216 330 176 18 chr3 188894660 188895264 -29141894 + L2 LINE L2 582 1280 -2034 1954 183 68 24 chr3 188895435 188895845 -29141313 - MSTA LTR MaLR 0 428 1 8988 174 20 12 chr3 188895845 188897481 -29139677 - MSTA-int LTR MaLR 0 1651 3 1697 183 151 5 chr3 188897482 188897854 -29139304 - MSTA LTR MaLR 0 428 3 462 204 0 0 chr3 188898871 188898974 -29138184 + CT-rich Low_complexity Low_complexity 4 106 0 392 193 6 139 chr3 188899030 188899196 -29137962 + MER112 DNA MER1_type 91 234 -26 313 269 129 0 chr3 188900027 188900120 -29137038 + MIR SINE MIR 139 243 -19 24 0 0 0 chr3 188901477 188901501 -29135657 + AT_rich Low_complexity Low_complexity 1 24 0 379 210 43 105 chr3 188901598 188901760 -29135398 + MER5B DNA MER1_type 2 153 -25 1720 136 72 19 chr3 188901765 188902129 -29135029 + Tigger3(Golem) DNA MER2_type 2 3028 -1 268 303 56 22 chr3 188902924 188903013 -29134145 + L2 LINE L2 3150 3241 -31 23 0 0 0 chr3 188903522 188903545 -29133613 + AT_rich Low_complexity Low_complexity 1 23 0 227 268 122 0 chr3 188903806 188903888 -29133270 - MIR SINE MIR -150 112 21 432 282 160 6 chr3 188904009 188904165 -29132993 + MER5A DNA MER1_type 7 186 -3 * 571 269 88 38 chr3 188904150 188904356 -29132802 + MIR SINE MIR 1 222 -40 1521 105 0 0 chr3 188904356 188904565 -29132593 + AluSg/x SINE Alu 102 310 -2 571 269 88 38 chr3 188904565 188904596 -29132562 + MIR SINE MIR 222 250 -12 292 310 239 0 chr3 188905444 188905557 -29131601 - MER5A DNA MER1_type -1 188 49 788 239 49 46 chr3 188905565 188905817 -29131341 + MIR SINE MIR 16 262 0 2458 86 0 0 chr3 188907024 188907326 -29129832 + AluSx SINE Alu 2 303 -9 1244 258 185 5 chr3 188907360 188907786 -29129372 + MLT1J LTR MaLR 1 503 -8 223 266 16 16 chr3 188908184 188908248 -29128910 + GA-rich Low_complexity Low_complexity 1 64 0 1716 199 7 3 chr3 188909013 188909315 -29127843 - AluJo SINE Alu -7 305 3 219 287 172 66 chr3 188909338 188909460 -29127698 + L2 LINE L2 3127 3261 -11 358 331 50 7 chr3 188911722 188911861 -29125297 - MIR SINE MIR -55 207 63 2117 57 0 14 chr3 188912184 188912465 -29124693 + L1PA8 LINE L1 5896 6172 0 1972 124 3 63 chr3 188912910 188913241 -29123917 + AluSq SINE Alu 1 311 -2 230 217 0 58 chr3 188913816 188913885 -29123273 + CT-rich Low_complexity Low_complexity 1 65 0 22 0 0 0 chr3 188914332 188914354 -29122804 + AT_rich Low_complexity Low_complexity 1 22 0 223 255 0 0 chr3 188914765 188914816 -29122342 + MIR SINE MIR 211 261 -1 302 301 37 37 chr3 188915762 188915898 -29121260 - L2 LINE L2 0 3272 3137 212 290 40 65 chr3 188915923 188916047 -29121111 + L2 LINE L2 3149 3269 -3 263 272 165 19 chr3 188916351 188916509 -29120649 - MIR SINE MIR -62 200 20 2331 106 0 0 chr3 188916728 188917030 -29120128 - AluSq SINE Alu -11 302 1 336 330 93 28 chr3 188917322 188917504 -29119654 + MIR SINE MIR 12 205 -57 240 286 135 8 chr3 188917558 188917684 -29119474 + L2 LINE L2 1511 1652 -1662 1412 300 156 37 chr3 188917759 188919002 -29118156 + L2 LINE L2 1901 3313 0 245 371 57 8 chr3 188919778 188919902 -29117256 - MIR3 SINE MIR -7 201 72 22 0 0 0 chr3 188920181 188920203 -29116955 + AT_rich Low_complexity Low_complexity 1 22 0 2668 232 48 23 chr3 188920353 188921081 -29116077 - L1MC4 LINE L1 -137 7905 7160 31 0 0 0 chr3 188921142 188921173 -29115985 + AT_rich Low_complexity Low_complexity 1 31 0 381 236 151 0 chr3 188921574 188921680 -29115478 - MER5A DNA MER1_type -13 176 55 239 344 11 22 chr3 188922210 188922300 -29114858 - L2 LINE L2 0 3272 3184 382 353 39 22 chr3 188922385 188922617 -29114541 + MIR SINE MIR 7 242 -20 27 81 0 0 chr3 188922698 188922760 -29114398 + AT_rich Low_complexity Low_complexity 1 62 0 2420 89 0 0 chr3 188923209 188923511 -29113647 + AluSc SINE Alu 3 304 -5 391 286 64 22 chr3 188925109 188925527 -29111631 + L1ME3A LINE L1 818 1289 -4982 664 276 50 50 chr3 188925629 188926260 -29110898 + L1ME3A LINE L1 1877 2462 -3753 840 223 85 0 chr3 188926260 188926448 -29110710 + LTR50 LTR ERVL 1 204 -591 268 261 46 0 chr3 188926629 188926694 -29110464 + LTR50 LTR ERVL 494 561 -234 551 255 14 89 chr3 188926747 188927108 -29110050 + L1ME3A LINE L1 2498 2831 -3384 417 170 206 65 chr3 188927612 188927743 -29109415 + MSTB2 LTR MaLR 10 168 -289 1012 126 0 0 chr3 188927748 188927891 -29109267 + AluSg/x SINE Alu 155 297 -13 949 208 21 54 chr3 188927891 188928132 -29109026 + MSTB2 LTR MaLR 225 457 0 2739 247 87 17 chr3 188928144 188929325 -29107833 + L1ME3A LINE L1 4964 6234 -5 37 62 0 0 chr3 188929689 188929754 -29107404 + AT_rich Low_complexity Low_complexity 1 65 0 1813 100 0 0 chr3 188929754 188930015 -29107143 - L1MA2 LINE L1 -9 6295 6035 525 16 0 0 chr3 188931208 188931270 -29105888 + (CA)n Simple_repeat Simple_repeat 2 63 0 370 256 182 0 chr3 188932441 188932562 -29104596 + MIR SINE MIR 120 262 0 207 225 0 0 chr3 188932563 188932603 -29104555 + (TTA)n Simple_repeat Simple_repeat 2 41 0 2013 131 3 0 chr3 188933089 188933407 -29103751 + AluSx SINE Alu 1 319 0 201 74 0 0 chr3 188933835 188933862 -29103296 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 188 310 184 11 chr3 188933863 188933950 -29103208 - L2 LINE L2 -11 3261 3160 317 217 138 14 chr3 188934757 188934895 -29102263 - L1ME4a LINE L1 -6 6115 5961 255 169 77 23 chr3 188935086 188935216 -29101942 + (TA)n Simple_repeat Simple_repeat 1 137 0 664 285 60 4 chr3 188935377 188935612 -29101546 - L1ME3A LINE L1 -6 6164 5917 2983 218 61 26 chr3 188935942 188937511 -29099647 - L1ME1 LINE L1 -32 6134 4512 4863 163 21 18 chr3 188937511 188938425 -29098733 - Tigger1 DNA MER2_type 0 2418 1502 1941 223 36 10 chr3 188938733 188939236 -29097922 - L1M4 LINE L1 -1119 6446 5931 11422 133 42 17 chr3 188939236 188941147 -29096011 - Tigger1 DNA MER2_type 0 2418 460 4223 211 42 11 chr3 188941147 188942038 -29095120 + L1M1 LINE L1 12 929 -6636 1871 192 86 0 chr3 188942033 188942418 -29094740 - L1M4 LINE L1 -6165 1400 983 * 5542 196 30 32 chr3 188942415 188944320 -29092838 + L1M1 LINE L1 2978 4962 -2603 7458 107 16 12 chr3 188944428 188945560 -29091598 - HERVH LTR ERV1 -2618 5095 3953 5761 103 11 2 chr3 188945590 188946437 -29090721 - HERVH LTR ERV1 -3720 3993 3140 * 14128 120 39 31 chr3 188946433 188949268 -29087890 - HERVH LTR ERV1 -4728 2985 1 2529 96 91 19 chr3 188949270 188949688 -29087470 - LTR7 LTR ERV1 -2 448 1 393 270 14 27 chr3 188949887 188950035 -29087123 - L1MEd LINE L1 -5933 186 41 272 261 115 30 chr3 188950075 188950309 -29086849 - L1ME LINE L1 -229 5892 5639 207 342 84 32 chr3 188950706 188950861 -29086297 - MIR SINE MIR -10 252 90 341 271 103 9 chr3 188951137 188951244 -29085914 + MER91C DNA MER1_type 6 122 -18 765 240 65 30 chr3 188953265 188953465 -29083693 + MER63A DNA MER1_type 1 207 -3 1452 179 45 153 chr3 188953930 188954394 -29082764 - MLT2B1 LTR ERVL 0 414 1 212 305 84 32 chr3 188955085 188955180 -29081978 + MIR3 SINE MIR 60 159 -49 886 188 16 0 chr3 188955346 188955532 -29081626 + MER53 DNA DNA 1 189 0 10848 141 20 11 chr3 188956514 188959599 -29077559 + L1MA1 LINE L1 3196 6302 0 2295 196 37 11 chr3 188959616 188960079 -29077079 - Tigger1 DNA MER2_type -1943 475 1 2106 254 29 21 chr3 188960107 188960772 -29076386 - L1M4 LINE L1 -1678 4468 3799 382 276 140 42 chr3 188960783 188961047 -29076111 - L1M4 LINE L1 -2687 3459 3170 395 258 39 0 chr3 188961073 188961228 -29075930 - L1M4 LINE L1 -3091 3055 2895 682 247 0 20 chr3 188961318 188961366 -29075792 + MER5A DNA MER1_type 1 48 -141 1747 191 46 75 chr3 188961366 188961609 -29075549 + MLT1C LTR MaLR 1 225 -242 1624 206 17 0 chr3 188961609 188961905 -29075253 - AluJb SINE Alu -11 301 1 1747 191 46 75 chr3 188961905 188962142 -29075016 + MLT1C LTR MaLR 225 467 0 682 247 0 20 chr3 188962142 188962239 -29074919 + MER5A DNA MER1_type 48 143 -46 580 320 41 29 chr3 188962242 188962583 -29074575 - L1M4 LINE L1 -3312 2834 2490 264 100 0 0 chr3 188962786 188962826 -29074332 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 2553 92 94 12 chr3 188962879 188963293 -29073865 - LTR7 LTR ERV1 -2 448 1 1894 75 56 20 chr3 188963293 188963599 -29073559 - HERVH LTR ERV1 0 7713 7397 1376 108 10 0 chr3 188963719 188963914 -29073244 + AluSg/x SINE Alu 103 299 -11 894 310 171 58 chr3 188963914 188965358 -29071800 - L2 LINE L2 -618 2696 1090 4491 77 5 0 chr3 188966134 188966731 -29070427 - L1PA7 LINE L1 -7 6147 5548 938 19 0 0 chr3 188967568 188967676 -29069482 + L1PA5 LINE L1 6038 6145 -9 35 0 0 0 chr3 188967676 188967711 -29069447 + AT_rich Low_complexity Low_complexity 1 35 0 217 288 182 0 chr3 188967986 188968088 -29069070 - MIR SINE MIR -66 142 33 186 189 0 0 chr3 188968292 188968329 -29068829 + GA-rich Low_complexity Low_complexity 4 40 0 181 316 0 0 chr3 188968438 188968495 -29068663 + MIR SINE MIR 53 109 -99 6438 102 17 11 chr3 188969134 188970110 -29067048 - L1MA2 LINE L1 0 6304 5323 21 57 0 0 chr3 188970114 188970149 -29067009 + AT_rich Low_complexity Low_complexity 1 35 0 1452 275 81 31 chr3 188971144 188971660 -29065498 + MLT1F LTR MaLR 1 542 0 954 234 155 14 chr3 188972796 188973074 -29064084 + HsTC2 DNA Tc2 4 320 -1578 535 207 92 6 chr3 188973070 188973244 -29063914 + HsTC2 DNA Tc2 1703 1891 -7 * 425 255 188 54 chr3 188973467 188973781 -29063377 + MLT1J LTR MaLR 102 457 -54 2003 243 91 22 chr3 188973938 188974403 -29062755 - L1MCc LINE L1 -2921 4020 3589 661 260 100 5 chr3 188974403 188974603 -29062555 - MER20 DNA MER1_type 0 219 1 2003 243 91 22 chr3 188974603 188975209 -29061949 - L1MCc LINE L1 -3352 3589 2915 469 296 92 34 chr3 188975216 188975510 -29061648 - L1MCc LINE L1 -4250 2872 2562 690 294 36 23 chr3 188975653 188975765 -29061393 - L1MCc LINE L1 -4889 1534 1425 1821 118 11 0 chr3 188975765 188976027 -29061131 - AluSq SINE Alu -9 304 40 690 294 36 23 chr3 188976027 188976416 -29060742 - L1MCc LINE L1 -4998 1425 1168 480 48 0 0 chr3 188976816 188976879 -29060279 + (TG)n Simple_repeat Simple_repeat 1 63 0 2096 118 29 56 chr3 188976939 188977313 -29059845 + THE1B LTR MaLR 1 364 0 10388 89 65 12 chr3 188977313 188978814 -29058344 + THE1B-int LTR MaLR 1 1580 0 1866 140 56 36 chr3 188978814 188979171 -29057987 + THE1B LTR MaLR 1 364 0 24 0 0 0 chr3 188979685 188979709 -29057449 + AT_rich Low_complexity Low_complexity 1 24 0 2095 255 68 46 chr3 188981151 188982108 -29055050 + Zaphod DNA AcHobo 13 990 -3041 922 247 54 14 chr3 188982096 188982465 -29054693 + Zaphod DNA AcHobo 3582 3965 -66 * 226 264 69 0 chr3 188982491 188982563 -29054595 + Zaphod DNA AcHobo 3948 4024 -7 310 269 121 27 chr3 188982584 188982733 -29054425 + L1MC5 LINE L1 7615 7777 -184 310 358 43 34 chr3 188982936 188983143 -29054015 + MIR SINE MIR 51 259 -3 433 242 40 0 chr3 188983482 188983581 -29053577 + MSTD LTR MaLR 1 103 -325 899 196 112 62 chr3 188983848 188984108 -29053050 + MSTD LTR MaLR 124 396 0 325 264 84 58 chr3 188986327 188986482 -29050676 + L3 LINE CR1 437 595 -982 335 257 215 7 chr3 188986601 188986745 -29050413 - MIR SINE MIR -42 220 47 408 247 0 0 chr3 188986767 188986860 -29050298 - MIR SINE MIR -57 205 113 434 247 41 31 chr3 188986990 188987151 -29050007 + MIR SINE MIR 30 190 -62 26 30 0 0 chr3 188987752 188987785 -29049373 + AT_rich Low_complexity Low_complexity 1 33 0 187 250 276 13 chr3 188988309 188988385 -29048773 + MIR SINE MIR 163 258 -4 231 282 47 35 chr3 188988848 188988933 -29048225 - MIR SINE MIR -52 210 125 245 320 165 0 chr3 188989154 188989251 -29047907 - L2 LINE L2 -22 3291 3179 195 259 0 0 chr3 188989253 188989311 -29047847 + GA-rich Low_complexity Low_complexity 3 60 0 2119 134 48 28 chr3 188989447 188989804 -29047354 + THE1B LTR MaLR 1 364 0 8377 110 7 1 chr3 188989804 188990954 -29046204 + THE1B-int LTR MaLR 1 1157 -423 1023 251 45 107 chr3 188990954 188991357 -29045801 + MLT2B1 LTR ERVL 63 440 -80 493 243 0 0 chr3 188991523 188991634 -29045524 - MER31-int LTR ERV1 -467 4469 4359 226 230 138 23 chr3 188991690 188991777 -29045381 - LTR37A LTR ERV1 -326 100 4 3194 197 17 59 chr3 188991800 188991916 -29045242 - MER31-int LTR ERV1 -727 4209 4090 2254 131 91 13 chr3 188991916 188992313 -29044845 - MSTA LTR MaLR 0 428 1 3194 197 17 59 chr3 188992313 188992946 -29044212 - MER31-int LTR ERV1 -846 4090 3491 239 192 0 0 chr3 188992954 188993006 -29044152 - MSTB1 LTR MaLR 0 432 381 573 122 78 0 chr3 188993006 188993096 -29044062 - MSTB-int LTR MaLR -1553 98 2 2165 197 36 2 chr3 188993097 188993509 -29043649 - MSTB LTR MaLR 0 426 1 7764 176 30 70 chr3 188993509 188995187 -29041971 - MSTB-int LTR MaLR -40 1611 1 1984 180 61 24 chr3 188995187 188995598 -29041560 - MSTB LTR MaLR 0 426 1 3018 207 19 40 chr3 188995610 188996302 -29040856 - MER31-int LTR ERV1 -3929 1007 331 329 274 49 0 chr3 188996383 188996485 -29040673 - MER31-int LTR ERV1 -4630 306 200 739 229 0 19 chr3 188996549 188996706 -29040452 - MER31-int LTR ERV1 -4763 173 20 415 189 0 147 chr3 188996706 188996849 -29040309 - MER31B LTR ERV1 -344 122 1 706 11 43 0 chr3 188996953 188997046 -29040112 + (TTTC)n Simple_repeat Simple_repeat 2 98 0 1900 177 128 13 chr3 188997128 188997512 -29039646 - MSTA LTR MaLR 0 428 1 9118 178 23 5 chr3 188997512 188999133 -29038025 - MSTA-int LTR MaLR 0 1651 1 1300 176 4 9 chr3 188999135 188999368 -29037790 - MSTB LTR MaLR -9 419 188 21 0 0 0 chr3 188999570 188999591 -29037567 + AT_rich Low_complexity Low_complexity 1 21 0 583 241 112 0 chr3 189001756 189001920 -29035238 - MER5A DNA MER1_type 0 189 5 578 282 26 26 chr3 189001967 189002162 -29034996 + LTR33 LTR ERVL 1 195 -326 603 325 30 26 chr3 189002775 189003043 -29034115 + LTR33 LTR ERVL 246 514 -7 902 300 29 63 chr3 189003156 189003735 -29033423 + L2 LINE L2 2674 3232 -81 242 305 19 48 chr3 189004068 189004173 -29032985 - L3 LINE CR1 -30 1547 1446 512 56 14 0 chr3 189006586 189006658 -29030500 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 903 200 70 5 chr3 189006763 189006948 -29030210 - AluJo SINE Alu -115 197 1 2449 59 7 0 chr3 189006972 189007260 -29029898 + AluY SINE Alu 1 290 -21 4626 181 62 12 chr3 189007669 189008699 -29028459 + Tigger6a DNA MER2_type 1 1082 -1 38 68 0 0 chr3 189008703 189008776 -29028382 + AT_rich Low_complexity Low_complexity 1 73 0 4018 208 47 4 chr3 189009373 189010190 -29026968 - L1PBa LINE L1 -6011 852 1 14733 162 21 5 chr3 189010232 189012647 -29024511 - L1M1 LINE L1 -5101 2464 12 1661 167 23 9 chr3 189012644 189012992 -29024166 - L1 LINE L1 -1653 4675 4323 * 5939 207 27 16 chr3 189012993 189016612 -29020546 - L1 LINE L1 -2585 3743 5 510 348 68 20 chr3 189016668 189017022 -29020136 + L1 LINE L1 2359 2729 -3417 1124 217 52 119 chr3 189017221 189017791 -29019367 - MER39 LTR ERV1 0 707 8 27 0 0 0 chr3 189017848 189017875 -29019283 + AT_rich Low_complexity Low_complexity 1 27 0 307 279 27 18 chr3 189018166 189018277 -29018881 + L1 LINE L1 3389 3500 -2646 2773 221 43 7 chr3 189018279 189018882 -29018276 + MER82 DNA MER2_type 1 625 -28 29 47 0 0 chr3 189018882 189018925 -29018233 + AT_rich Low_complexity Low_complexity 1 43 0 630 122 0 0 chr3 189018979 189019077 -29018081 + (TC)n Simple_repeat Simple_repeat 2 99 0 919 103 0 0 chr3 189019078 189019194 -29017964 - AluSq/x SINE Alu -196 116 1 332 248 217 8 chr3 189019256 189019385 -29017773 + L1 LINE L1 3648 3803 -2343 1275 210 40 33 chr3 189019428 189019700 -29017458 - MER21B LTR ERV1 -2 861 588 4005 144 33 26 chr3 189019706 189020394 -29016764 - MER50 LTR ERV1 -41 693 1 2537 209 70 30 chr3 189020395 189020964 -29016194 - MER21B LTR ERV1 -271 592 1 307 141 63 12 chr3 189021047 189021149 -29016009 + L1P LINE L1 4601 4710 -1436 992 209 5 0 chr3 189021200 189021387 -29015771 - MER5A DNA MER1_type 0 189 2 713 173 0 31 chr3 189022002 189022129 -29015029 - FLAM_A SINE Alu -9 124 2 13313 125 35 71 chr3 189022250 189024755 -29012403 - Tigger1 DNA MER2_type -1 2417 1 3842 151 55 13 chr3 189025201 189025915 -29011243 - Tigger3(Golem) DNA MER2_type -2 3027 2284 272 276 0 0 chr3 189025929 189025987 -29011171 - Tigger3(Golem) DNA MER2_type -2954 75 18 24 32 0 0 chr3 189026119 189026150 -29011008 + AT_rich Low_complexity Low_complexity 1 31 0 278 326 91 80 chr3 189027327 189027591 -29009567 - L2 LINE L2 -14 3258 2992 2151 69 0 117 chr3 189027887 189028237 -29008921 + AluSc SINE Alu 1 309 0 444 118 0 0 chr3 189028252 189028320 -29008838 + (CA)n Simple_repeat Simple_repeat 1 68 0 198 0 0 0 chr3 189028320 189028342 -29008816 + (TA)n Simple_repeat Simple_repeat 1 22 0 1561 197 13 23 chr3 189028342 189028646 -29008512 - AluJo SINE Alu -11 301 1 261 0 0 0 chr3 189029615 189029644 -29007514 + (TA)n Simple_repeat Simple_repeat 2 30 0 608 263 119 33 chr3 189029660 189030080 -29007078 - L1ME1 LINE L1 -285 5881 5433 415 219 190 58 chr3 189030173 189030484 -29006674 + MLT1G1 LTR MaLR 204 595 0 657 268 88 44 chr3 189030517 189031274 -29005884 - L1ME1 LINE L1 -986 5160 4370 241 304 18 0 chr3 189031281 189031329 -29005829 - L1MA10 LINE L1 -10 6324 6277 1155 267 91 37 chr3 189031329 189031400 -29005758 - L1ME2 LINE L1 -51 6096 6030 2273 92 7 0 chr3 189031400 189031692 -29005466 - AluY SINE Alu -17 294 1 1155 267 91 37 chr3 189031692 189032159 -29004999 - L1ME2 LINE L1 -117 6030 5529 602 301 100 7 chr3 189032160 189032469 -29004689 - L1ME2 LINE L1 -2748 3381 3044 315 145 305 53 chr3 189032482 189032613 -29004545 + LTR41 LTR ERVL 15 178 -595 2674 19 9 3 chr3 189034352 189034699 -29002459 - L1PA3 LINE L1 0 6155 5829 689 169 76 17 chr3 189034719 189034891 -29002267 + MLT1A2 LTR MaLR 189 370 -4 390 347 43 38 chr3 189034908 189035300 -29001858 - L1ME2 LINE L1 -3528 2601 2208 323 299 67 79 chr3 189035361 189035702 -29001456 - L1ME2 LINE L1 -4188 2122 1786 330 314 57 60 chr3 189035808 189036056 -29001102 - L1ME2 LINE L1 -4773 1537 1291 461 243 51 79 chr3 189036062 189036178 -29000980 - L1ME2 LINE L1 -4881 1238 1120 1651 37 0 0 chr3 189036178 189036367 -29000791 - AluY SINE Alu -2 309 121 461 243 51 79 chr3 189036367 189036604 -29000554 - L1ME2 LINE L1 -4999 1120 895 207 158 24 61 chr3 189036651 189036733 -29000425 + A-rich Low_complexity Low_complexity 4 82 0 430 295 33 0 chr3 189036748 189036931 -29000227 - L1ME2 LINE L1 -5280 839 651 333 263 14 106 chr3 189037055 189037348 -28999810 - L1ME2 LINE L1 -5835 284 19 231 328 17 107 chr3 189037887 189038064 -28999094 + L2 LINE L2 3110 3270 -2 367 300 106 55 chr3 189038653 189039070 -28998088 - MLT1K LTR MaLR -3 585 148 313 146 0 18 chr3 189039184 189039239 -28997919 - THE1C LTR MaLR 0 428 375 274 192 0 0 chr3 189039388 189039440 -28997718 - L1MCa LINE L1 -5500 926 875 5503 101 15 17 chr3 189039446 189039804 -28997354 - L1PB1 LINE L1 -1 6150 5793 480 35 0 0 chr3 189039804 189039862 -28997296 + (TG)n Simple_repeat Simple_repeat 2 59 0 5503 101 15 17 chr3 189039862 189040394 -28996764 - L1PB1 LINE L1 -358 5793 5262 18370 143 54 61 chr3 189040396 189044546 -28992612 - HUERS-P1 LTR ERV1 -2143 4120 1 714 133 6 127 chr3 189044546 189044711 -28992447 - LTR8 LTR ERV1 0 691 547 * 1548 153 52 18 chr3 189044707 189045034 -28992124 - THE1C LTR MaLR -37 338 1 279 390 42 8 chr3 189045606 189045724 -28991434 + L2 LINE L2 3133 3254 -18 235 227 112 58 chr3 189046476 189046718 -28990440 + MER113 DNA MER1_type? 3 257 -264 2323 152 36 10 chr3 189046718 189047133 -28990025 - MSTA LTR MaLR 0 428 3 8454 180 8 29 chr3 189047135 189047964 -28989194 - MSTA-int LTR MaLR 0 1651 807 2310 93 7 7 chr3 189047964 189048265 -28988893 - AluY SINE Alu -10 301 1 8454 180 8 29 chr3 189048265 189048660 -28988498 - MSTA-int LTR MaLR -844 807 406 7662 25 0 0 chr3 189048660 189049840 -28987318 - L1PA3 LINE L1 -10 6145 4966 8454 180 8 29 chr3 189049840 189050299 -28986859 - MSTA-int LTR MaLR -1245 406 1 2411 147 47 0 chr3 189050299 189050708 -28986450 - MSTA LTR MaLR 0 428 1 349 266 77 7 chr3 189050750 189050893 -28986265 + MER113 DNA MER1_type? 304 456 -65 2689 135 19 2 chr3 189050895 189051316 -28985842 + MSTA LTR MaLR 1 428 0 225 132 0 0 chr3 189051453 189051491 -28985667 + (TATG)n Simple_repeat Simple_repeat 1 38 0 3795 164 25 42 chr3 189051710 189052550 -28984608 + L1MA4 LINE L1 5469 6294 -6 554 324 113 29 chr3 189052658 189053260 -28983898 + L2 LINE L2 2638 3296 -17 213 197 0 0 chr3 189053262 189053323 -28983835 + (TA)n Simple_repeat Simple_repeat 1 61 0 2398 94 0 0 chr3 189053975 189054274 -28982884 - AluSq SINE Alu -14 299 1 273 201 115 50 chr3 189054410 189054549 -28982609 + MLT1J LTR MaLR 1 148 -363 269 222 11 44 chr3 189054740 189054830 -28982328 + MLT1J2 LTR MaLR 361 447 -3 187 184 53 0 chr3 189054900 189054938 -28982220 - MIR3 SINE MIR -50 158 119 928 246 4 22 chr3 189055027 189055255 -28981903 + MER58A DNA MER1_type 1 224 0 1831 213 71 97 chr3 189055333 189056079 -28981079 - LTR8A LTR ERV1 0 727 1 22 0 0 0 chr3 189058157 189058179 -28978979 + AT_rich Low_complexity Low_complexity 1 22 0 593 172 123 12 chr3 189058798 189058961 -28978197 + MER69 DNA AcHobo 1 181 -2345 313 284 63 0 chr3 189059646 189059741 -28977417 + MIR SINE MIR 48 148 -114 1076 204 82 12 chr3 189059742 189060183 -28976975 - LTR48B LTR ERV1 0 644 129 251 305 0 34 chr3 189060168 189060286 -28976872 - MER34 LTR ERV1 -428 114 1 * 24 0 0 0 chr3 189060472 189060496 -28976662 + AT_rich Low_complexity Low_complexity 1 24 0 210 71 0 0 chr3 189060611 189060639 -28976519 + (CA)n Simple_repeat Simple_repeat 1 28 0 3060 217 20 47 chr3 189061232 189061741 -28975417 - LTR39 LTR ERV1 0 783 303 2335 111 0 0 chr3 189061741 189062048 -28975110 - AluSg SINE Alu 0 310 4 3060 217 20 47 chr3 189062048 189062343 -28974815 - LTR39 LTR ERV1 -480 303 1 2691 182 44 2 chr3 189062433 189062982 -28974176 - LTR29 LTR ERV1 0 622 51 2460 179 31 27 chr3 189064730 189065283 -28971875 + LTR60 LTR ERV1 1 555 -31 461 201 34 47 chr3 189065155 189065304 -28971854 + TAR1 Satellite telomeric 39 185 -1926 * 2130 151 9 27 chr3 189065736 189066199 -28970959 + LTR23-int LTR ERV1 5303 5810 -632 299 198 40 40 chr3 189066192 189066293 -28970865 + LTR23-int LTR ERV1 4794 4894 -229 * 2483 60 0 3 chr3 189066345 189066645 -28970513 - AluY SINE Alu -11 300 2 1658 120 48 14 chr3 189066726 189067018 -28970140 + LTR23 LTR ERV1 4 305 -132 6257 177 19 6 chr3 189067020 189068356 -28968802 - L1PB4 LINE L1 -1068 5078 3725 1830 149 27 4 chr3 189068347 189068816 -28968342 + L1PB4 LINE L1 5089 5575 -581 * 2391 100 29 83 chr3 189068819 189069163 -28967995 + MER48 LTR ERV1 1 320 -78 2160 99 3 0 chr3 189069163 189069472 -28967686 + AluY SINE Alu 1 310 0 2391 100 29 83 chr3 189069472 189069547 -28967611 + MER48 LTR ERV1 320 398 0 18375 109 19 15 chr3 189069547 189073256 -28963902 + HERVH48 LTR ERV1 1 3820 -2834 1807 73 4 8 chr3 189073260 189073521 -28963637 + HERVH48 LTR ERV1 2957 3216 -3438 * 18760 95 28 3 chr3 189073516 189076280 -28960878 + HERVH48 LTR ERV1 3822 6654 0 1100 86 1 0 chr3 189076280 189076468 -28960690 + MER48 LTR ERV1 1 168 -219 1859 94 4 0 chr3 189076484 189076738 -28960420 + MER48 LTR ERV1 132 386 -1 3426 145 12 5 chr3 189076738 189077317 -28959841 + L1PB4 LINE L1 5573 6155 -1 456 175 150 0 chr3 189077390 189077510 -28959648 + LTR23 LTR ERV1 300 437 0 863 273 98 31 chr3 189079262 189079433 -28957725 + L1MDb LINE L1 783 941 -5465 2395 75 3 3 chr3 189079433 189079741 -28957417 + AluY SINE Alu 1 308 -3 863 273 98 31 chr3 189079741 189080101 -28957057 + L1MDb LINE L1 941 1313 -5093 * 936 262 87 43 chr3 189080085 189080490 -28956668 + L1MDb LINE L1 3131 3574 -2832 1659 185 0 35 chr3 189080490 189080633 -28956525 + AluJb SINE Alu 1 147 -165 2223 96 10 0 chr3 189080633 189080936 -28956222 + AluY SINE Alu 1 306 -5 1659 185 0 35 chr3 189080936 189081137 -28956021 + AluJb SINE Alu 147 312 0 936 262 87 43 chr3 189081137 189081354 -28955804 + L1MDb LINE L1 3574 3780 -2626 1294 99 71 9 chr3 189081354 189081566 -28955592 + AluY SINE Alu 70 294 -17 345 100 0 0 chr3 189081566 189081616 -28955542 + (GA)n Simple_repeat Simple_repeat 1 50 0 180 0 0 0 chr3 189081849 189081869 -28955289 + (CA)n Simple_repeat Simple_repeat 1 20 0 423 0 0 0 chr3 189082073 189082120 -28955038 + (CA)n Simple_repeat Simple_repeat 1 47 0 765 237 96 27 chr3 189083028 189083247 -28953911 - MIR SINE MIR -14 248 15 1864 222 97 9 chr3 189084000 189084464 -28952694 - MLT1D LTR MaLR 0 505 1 1165 168 9 113 chr3 189084787 189085114 -28952044 - AluJo SINE Alu -8 294 2 291 353 113 23 chr3 189086033 189086166 -28950992 - L2 LINE L2 -6 3266 3122 187 267 44 0 chr3 189086802 189086847 -28950311 + MER5B DNA MER1_type 131 177 -1 1485 229 118 13 chr3 189087042 189087510 -28949648 + L1MC4 LINE L1 7525 8041 -1 31 0 0 0 chr3 189087544 189087575 -28949583 + AT_rich Low_complexity Low_complexity 1 31 0 812 167 8 0 chr3 189087579 189087711 -28949447 + FLAM_C SINE Alu 1 133 -10 615 267 144 20 chr3 189087711 189088052 -28949106 + HAL1b LINE L1 819 1201 -147 27 62 0 0 chr3 189088181 189088229 -28948929 + AT_rich Low_complexity Low_complexity 1 48 0 15172 191 35 10 chr3 189088497 189095081 -28942077 - L1PB1 LINE L1 -35 6832 6 279 303 84 108 chr3 189096325 189097039 -28940119 - L2 LINE L2 -556 2758 2062 2017 218 39 81 chr3 189099581 189100222 -28936936 - L1ME3A LINE L1 0 6170 5557 650 208 0 8 chr3 189100248 189100378 -28936780 - AluJb SINE Alu -183 129 1 1187 102 0 0 chr3 189100387 189100553 -28936605 - AluY SINE Alu -10 301 136 423 259 42 14 chr3 189100909 189101052 -28936106 - MIR SINE MIR -108 154 8 579 365 74 8 chr3 189102055 189102406 -28934752 + L3 LINE CR1 583 956 -621 522 354 117 45 chr3 189104491 189105164 -28931994 - L3 LINE CR1 -1 1576 855 28 48 0 0 chr3 189105839 189105881 -28931277 + AT_rich Low_complexity Low_complexity 1 42 0 223 312 248 16 chr3 189106932 189107057 -28930101 - MIR SINE MIR -101 161 8 180 0 0 0 chr3 189107095 189107115 -28930043 + (TAAAAA)n Simple_repeat Simple_repeat 6 25 0 545 250 0 0 chr3 189107277 189107409 -28929749 + MER94 DNA DNA 1 132 -2 258 164 55 27 chr3 189107543 189107616 -28929542 - MLT1H LTR MaLR 0 549 475 2145 115 7 0 chr3 189107632 189107936 -28929222 - AluSx SINE Alu -6 306 1 583 246 97 6 chr3 189108573 189108748 -28928410 - MLT1J LTR MaLR -320 191 1 839 252 64 5 chr3 189109839 189110057 -28927101 + MIR SINE MIR 11 241 -21 34 55 0 0 chr3 189110979 189111034 -28926124 + AT_rich Low_complexity Low_complexity 1 55 0 208 182 0 23 chr3 189111704 189111748 -28925410 + T-rich Low_complexity Low_complexity 3 45 0 255 31 0 0 chr3 189112161 189112193 -28924965 + (CA)n Simple_repeat Simple_repeat 1 32 0 763 309 57 68 chr3 189112258 189112728 -28924430 + L1ME1 LINE L1 250 714 -5491 1261 256 79 49 chr3 189112732 189113264 -28923894 + L1M4 LINE L1 3787 4334 -1812 * 2116 169 35 61 chr3 189113260 189113875 -28923283 - L1PA16 LINE L1 0 6166 5594 1725 162 56 0 chr3 189113910 189114194 -28922964 + AluSg SINE Alu 1 300 -10 373 255 82 25 chr3 189114204 189114400 -28922758 + L1M4 LINE L1 4353 4559 -1587 1673 285 174 13 chr3 189114405 189115638 -28921520 + L1ME1 LINE L1 1072 2503 -3893 1393 253 51 26 chr3 189115639 189116093 -28921065 + L1ME1 LINE L1 5755 6219 -16 202 87 43 22 chr3 189116191 189116237 -28920921 + T-rich Low_complexity Low_complexity 3 49 0 2115 105 6 10 chr3 189116239 189116553 -28920605 - AluSp SINE Alu 0 313 1 26 50 0 0 chr3 189116597 189116637 -28920521 + AT_rich Low_complexity Low_complexity 1 40 0 1950 102 25 3 chr3 189117037 189117321 -28919837 - AluSg SINE Alu -20 290 1 222 170 55 18 chr3 189117504 189117669 -28919489 + (TA)n Simple_repeat Simple_repeat 1 171 0 339 331 118 28 chr3 189117941 189118264 -28918894 - L1MC/D LINE L1 -2164 5644 5293 236 183 0 33 chr3 189118544 189118604 -28918554 + (CATA)n Simple_repeat Simple_repeat 2 59 0 274 386 68 17 chr3 189118995 189119231 -28917927 - MIR SINE MIR -10 252 5 279 315 11 43 chr3 189119843 189119935 -28917223 + L2 LINE L2 3183 3271 -1 25 0 0 0 chr3 189120234 189120259 -28916899 + AT_rich Low_complexity Low_complexity 1 25 0 414 204 41 23 chr3 189120259 189120431 -28916727 + (TA)n Simple_repeat Simple_repeat 2 176 0 392 259 9 37 chr3 189120489 189120597 -28916561 - MIR SINE MIR -101 161 57 332 338 73 50 chr3 189120895 189121197 -28915961 + L2 LINE L2 1180 1488 -1826 489 168 20 20 chr3 189121238 189121339 -28915819 + ORSL DNA AcHobo 175 275 0 286 336 69 49 chr3 189121356 189121603 -28915555 + L2 LINE L2 1530 1781 -1533 37 39 0 0 chr3 189121624 189121675 -28915483 + AT_rich Low_complexity Low_complexity 1 51 0 1208 205 26 13 chr3 189121698 189122000 -28915158 - L1M4 LINE L1 -2002 4144 3839 2526 180 38 24 chr3 189122008 189122590 -28914568 - L1MB3 LINE L1 -1 6182 5593 1446 90 51 26 chr3 189122604 189122838 -28914320 - L1MA2 LINE L1 -4 6300 6061 5582 222 77 63 chr3 189122844 189124478 -28912680 - L1MB3 LINE L1 -583 5600 3823 620 148 59 0 chr3 189124478 189124579 -28912579 - FLAM_A SINE Alu -18 124 18 5582 222 77 63 chr3 189124579 189125337 -28911821 - L1MB3 LINE L1 -2360 3823 3077 396 211 66 59 chr3 189125381 189125533 -28911625 - L1MCc LINE L1 -5010 1413 1261 22 0 0 0 chr3 189125590 189125612 -28911546 + AT_rich Low_complexity Low_complexity 1 22 0 1240 303 83 5 chr3 189125619 189125643 -28911515 - L1MCc LINE L1 -5158 1265 1244 209 32 0 32 chr3 189125643 189125674 -28911484 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1240 303 83 5 chr3 189125674 189126092 -28911066 - L1MCc LINE L1 -5179 1244 788 1424 220 92 9 chr3 189126272 189126609 -28910549 - MLT1A1 LTR MaLR 0 365 1 510 299 25 20 chr3 189126676 189126873 -28910285 - L1MCc LINE L1 -5974 449 252 249 331 27 14 chr3 189127062 189127210 -28909948 - L1MEd LINE L1 -5914 205 56 27 62 0 0 chr3 189127325 189127373 -28909785 + AT_rich Low_complexity Low_complexity 1 48 0 372 304 81 13 chr3 189127953 189128179 -28908979 - L1M4c LINE L1 -865 1878 1510 871 359 64 19 chr3 189128342 189128858 -28908300 + L2 LINE L2 2269 2807 -507 311 330 50 0 chr3 189128891 189128991 -28908167 + L2 LINE L2 2946 3050 -222 21 0 0 0 chr3 189129124 189129145 -28908013 + AT_rich Low_complexity Low_complexity 1 21 0 493 235 42 8 chr3 189129183 189129302 -28907856 - L2 LINE L2 -4 3309 3187 551 261 133 0 chr3 189129500 189129665 -28907493 - MER5A DNA MER1_type 0 189 3 562 318 26 0 chr3 189129762 189129951 -28907207 - LTR33 LTR ERVL -325 196 3 547 321 162 6 chr3 189129959 189130286 -28906872 - L2 LINE L2 -129 3184 2807 196 320 41 31 chr3 189130289 189130386 -28906772 - L2 LINE L2 -661 2653 2556 425 250 0 20 chr3 189130388 189130488 -28906670 - MIR SINE MIR -43 219 122 2185 84 3 10 chr3 189130728 189131036 -28906122 - AluSq SINE Alu -7 306 1 1326 174 102 11 chr3 189131544 189131808 -28905350 + AluJo SINE Alu 11 298 -14 203 255 0 0 chr3 189134279 189134326 -28902832 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 355 284 136 26 chr3 189134531 189134686 -28902472 + MIR SINE MIR 91 262 0 206 250 0 39 chr3 189136856 189136908 -28900250 + L2 LINE L2 3262 3311 -2 1599 240 29 13 chr3 189138697 189139147 -28898011 - Charlie1b DNA MER1_type 0 523 67 1876 236 40 42 chr3 189139148 189139718 -28897440 - L1MEc LINE L1 -3353 2862 2293 3430 132 6 2 chr3 189139718 189140258 -28896900 + L1PA15 LINE L1 5616 6157 -8 1876 236 40 42 chr3 189140258 189140904 -28896254 - L1MEc LINE L1 -3922 2293 1699 2131 182 33 0 chr3 189140905 189141333 -28895825 + L1MA8 LINE L1 5847 6288 -3 273 295 116 0 chr3 189142132 189142244 -28894914 - MIR SINE MIR 0 262 138 3504 255 69 51 chr3 189142244 189142594 -28894564 - L1 LINE L1 -3361 3806 3464 2319 173 4 42 chr3 189142594 189143045 -28894113 - Tigger2a DNA MER2_type 0 434 1 3504 255 69 51 chr3 189143045 189143116 -28894042 - L1 LINE L1 -3703 3464 3396 2234 110 0 3 chr3 189143116 189143425 -28893733 - AluSx SINE Alu -4 308 1 3504 255 69 51 chr3 189143425 189145472 -28891686 - L1 LINE L1 -3771 3396 1587 232 246 0 18 chr3 189146233 189146290 -28890868 - L1 LINE L1 -6082 1016 961 582 168 0 28 chr3 189146811 189146918 -28890240 + MER54B LTR ERVL 578 681 -112 26 74 0 0 chr3 189146985 189147039 -28890119 + AT_rich Low_complexity Low_complexity 1 54 0 330 143 0 0 chr3 189147039 189147102 -28890056 + (TA)n Simple_repeat Simple_repeat 1 63 0 2474 258 37 37 chr3 189147408 189147839 -28889319 - L1ME2 LINE L1 -30 6203 5773 2579 92 95 5 chr3 189147839 189148250 -28888908 - LTR7 LTR ERV1 -2 448 1 2474 258 37 37 chr3 189148250 189148776 -28888382 - L1ME2 LINE L1 -460 5773 5243 185 83 28 0 chr3 189148836 189148872 -28888286 + (TA)n Simple_repeat Simple_repeat 2 38 0 3742 181 26 25 chr3 189148907 189149587 -28887571 - MER54B LTR ERVL -112 681 1 749 242 13 83 chr3 189149589 189149903 -28887255 - L1ME2 LINE L1 -1048 5167 4876 1289 289 54 22 chr3 189149945 189151010 -28886148 - L1ME2 LINE L1 -1804 4411 953 1226 168 15 0 chr3 189151018 189151221 -28885937 + MER2 DNA MER2_type 1 206 -139 31 44 0 0 chr3 189151235 189151280 -28885878 + AT_rich Low_complexity Low_complexity 1 45 0 621 260 246 9 chr3 189151322 189151660 -28885498 - L1ME2 LINE L1 -5867 529 112 398 356 0 0 chr3 189151661 189151793 -28885365 - LTR33 LTR ERVL -389 132 1 334 375 16 25 chr3 189152113 189152358 -28884800 - MIR SINE MIR 0 262 20 306 0 0 0 chr3 189153027 189153061 -28884097 + (TG)n Simple_repeat Simple_repeat 1 34 0 285 167 0 0 chr3 189153074 189153152 -28884006 + (TA)n Simple_repeat Simple_repeat 2 79 0 215 385 89 0 chr3 189153375 189153510 -28883648 + L3 LINE CR1 1429 1575 -2 22 35 0 0 chr3 189153642 189153671 -28883487 + AT_rich Low_complexity Low_complexity 1 29 0 360 311 10 10 chr3 189153671 189153774 -28883384 - MIR3 SINE MIR -39 169 67 181 387 8 8 chr3 189155492 189155611 -28881547 + L2 LINE L2 2640 2758 -556 1004 164 44 58 chr3 189155613 189155838 -28881320 + MLT2A2 LTR ERVL 1 222 -231 491 257 24 53 chr3 189156049 189156255 -28880903 + MER58C DNA MER1_type 1 200 -15 32 57 0 0 chr3 189157177 189157230 -28879928 + AT_rich Low_complexity Low_complexity 1 53 0 196 192 19 39 chr3 189157813 189157865 -28879293 - L2 LINE L2 0 3313 3263 497 269 71 52 chr3 189158391 189158603 -28878555 - MIR SINE MIR -42 220 5 2358 184 73 15 chr3 189159314 189159777 -28877381 - MLT1D LTR MaLR 0 505 16 25 65 0 0 chr3 189160745 189160791 -28876367 + AT_rich Low_complexity Low_complexity 1 46 0 186 243 29 86 chr3 189161170 189161240 -28875918 - L2 LINE L2 -70 3202 3137 509 333 97 0 chr3 189161638 189161824 -28875334 - MIR SINE MIR -57 205 2 28 29 0 0 chr3 189161859 189161894 -28875264 + AT_rich Low_complexity Low_complexity 1 35 0 303 250 28 46 chr3 189162246 189162354 -28874804 - L1MC4 LINE L1 -1323 6719 6614 348 104 26 13 chr3 189162359 189162436 -28874722 + (TA)n Simple_repeat Simple_repeat 1 78 0 * 390 57 0 0 chr3 189162435 189162488 -28874670 + (GA)n Simple_repeat Simple_repeat 2 54 0 393 22 0 0 chr3 189163764 189163810 -28873348 + (TG)n Simple_repeat Simple_repeat 1 46 0 974 279 15 82 chr3 189164071 189164462 -28872696 + L2 LINE L2 2945 3309 -4 444 331 160 44 chr3 189164719 189164858 -28872300 + L2 LINE L2 257 378 -2936 2255 129 25 6 chr3 189164858 189165215 -28871943 - THE1B LTR MaLR 0 364 1 444 331 160 44 chr3 189165215 189165376 -28871782 + L2 LINE L2 378 519 -2795 2106 122 3 6 chr3 189165376 189165688 -28871470 - AluY SINE Alu 0 311 1 444 331 160 44 chr3 189165688 189166251 -28870907 + L2 LINE L2 519 1286 -2028 1779 137 75 33 chr3 189167351 189167710 -28869448 + THE1C LTR MaLR 1 374 -1 343 365 100 30 chr3 189167757 189168058 -28869100 - L2 LINE L2 -2685 629 308 27 0 0 0 chr3 189168945 189168972 -28868186 + AT_rich Low_complexity Low_complexity 1 27 0 608 347 44 32 chr3 189169279 189169688 -28867470 - L1MCc LINE L1 -5824 599 186 442 244 26 9 chr3 189169698 189169813 -28867345 - L1MCc LINE L1 -6285 138 22 1753 231 80 35 chr3 189170632 189171118 -28866040 - MLT2B1 LTR ERVL -12 508 1 499 248 78 82 chr3 189171347 189171553 -28865605 + MIR SINE MIR 58 262 0 2052 116 10 0 chr3 189171847 189172139 -28865019 - AluSq SINE Alu -18 295 1 183 186 0 0 chr3 189172203 189172246 -28864912 + (TA)n Simple_repeat Simple_repeat 2 44 0 773 322 169 25 chr3 189172346 189173368 -28863790 + L2 LINE L2 1380 2603 -711 1950 140 8 69 chr3 189173426 189173805 -28863353 - L1PB4 LINE L1 -12 6144 5789 222 37 0 0 chr3 189173826 189173860 -28863298 + (CA)n Simple_repeat Simple_repeat 1 61 0 222 37 0 0 chr3 189173860 189173887 -28863271 + (CA)n Simple_repeat Simple_repeat 2 28 0 2110 209 8 56 chr3 189173913 189174586 -28862572 - L1PB4 LINE L1 -689 5467 4835 220 340 32 109 chr3 189174635 189174920 -28862238 - L2 LINE L2 0 3272 3010 2106 116 0 13 chr3 189175201 189175504 -28861654 + AluSq SINE Alu 1 299 -14 27592 92 9 8 chr3 189176608 189183040 -28854118 + L1PA7 LINE L1 1 6464 -5 219 127 18 36 chr3 189183277 189183332 -28853826 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 523 334 106 37 chr3 189183673 189184191 -28852967 + MLT1K LTR MaLR 21 574 -14 451 375 41 26 chr3 189184307 189184696 -28852462 + L2 LINE L2 2581 2975 -339 318 26 0 0 chr3 189185132 189185171 -28851987 + (CA)n Simple_repeat Simple_repeat 2 40 0 811 289 35 65 chr3 189185526 189185805 -28851353 - L2 LINE L2 -1 3312 3047 663 207 16 0 chr3 189185805 189185926 -28851232 - FLAM_A SINE Alu -10 123 1 811 289 35 65 chr3 189185926 189186044 -28851114 - L2 LINE L2 -266 3047 2927 2584 55 0 3 chr3 189186950 189187257 -28849901 + AluY SINE Alu 4 309 -2 2246 118 3 10 chr3 189187906 189188220 -28848938 + AluSp SINE Alu 1 312 -1 734 286 35 5 chr3 189188438 189188637 -28848521 - MIR SINE MIR -44 218 14 198 167 0 0 chr3 189190769 189190805 -28846353 + (TG)n Simple_repeat Simple_repeat 2 37 0 210 71 0 0 chr3 189190814 189190842 -28846316 + (CGG)n Simple_repeat Simple_repeat 3 30 0 21 0 0 0 chr3 189191000 189191021 -28846137 + AT_rich Low_complexity Low_complexity 1 21 0 238 154 77 106 chr3 189194333 189194437 -28842721 + L3 LINE CR1 1476 1576 -1 21 0 0 0 chr3 189195005 189195026 -28842132 + AT_rich Low_complexity Low_complexity 1 21 0 333 209 23 23 chr3 189195613 189195699 -28841459 - MLT1L LTR MaLR -18 597 512 971 207 9 50 chr3 189195846 189196068 -28841090 - MER20 DNA MER1_type 0 219 7 201 39 0 0 chr3 189196125 189196151 -28841007 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1099 298 97 16 chr3 189197196 189197764 -28839394 - MLT1L LTR MaLR -1 614 1 24 53 0 0 chr3 189198850 189198888 -28838270 + AT_rich Low_complexity Low_complexity 1 38 0 1444 237 140 22 chr3 189199589 189200255 -28836903 - HsTC2a DNA MER2_type 0 744 1 246 393 49 6 chr3 189200488 189200651 -28836507 + MIR3 SINE MIR 21 190 -18 381 196 7 14 chr3 189201218 189201361 -28835797 + (TA)n Simple_repeat Simple_repeat 1 142 0 29 0 0 0 chr3 189201769 189201798 -28835360 + AT_rich Low_complexity Low_complexity 1 29 0 304 290 89 65 chr3 189202054 189202178 -28834980 - MIR3 SINE MIR -23 185 59 21 0 0 0 chr3 189202701 189202722 -28834436 + AT_rich Low_complexity Low_complexity 1 21 0 481 79 0 0 chr3 189202828 189202891 -28834267 - Alu SINE Alu -16 296 234 2561 59 0 0 chr3 189203389 189203692 -28833466 + AluY SINE Alu 1 303 -8 197 217 181 24 chr3 189204978 189205061 -28832097 + MIR SINE MIR 166 261 -1 180 197 82 33 chr3 189205694 189205755 -28831403 + L3 LINE CR1 1250 1313 -264 315 0 0 0 chr3 189207073 189207108 -28830050 + (CA)n Simple_repeat Simple_repeat 2 36 0 23 0 0 0 chr3 189208048 189208071 -28829087 + AT_rich Low_complexity Low_complexity 1 23 0 2127 117 0 0 chr3 189208081 189208396 -28828762 + AluSg SINE Alu 1 315 0 423 292 23 64 chr3 189210575 189210680 -28826478 + MIR SINE MIR 97 194 -68 324 0 0 0 chr3 189210680 189210716 -28826442 + (GA)n Simple_repeat Simple_repeat 2 37 0 423 292 23 64 chr3 189210716 189210781 -28826377 + MIR SINE MIR 194 260 -2 354 150 17 0 chr3 189210921 189210981 -28826177 - L2 LINE L2 -1091 2223 2163 392 268 98 0 chr3 189211008 189211131 -28826027 + MIR SINE MIR 72 206 -56 23 54 0 0 chr3 189212851 189212888 -28824270 + AT_rich Low_complexity Low_complexity 1 37 0 27 106 0 0 chr3 189212956 189213060 -28824098 + AT_rich Low_complexity Low_complexity 1 104 0 322 303 17 0 chr3 189213126 189213245 -28823913 - L1ME LINE L1 -446 5675 5555 656 199 0 37 chr3 189213662 189213798 -28823360 - MER30B DNA MER1_type 0 230 100 258 94 75 0 chr3 189213810 189213863 -28823295 - MER30B DNA MER1_type -80 110 70 2306 134 24 55 chr3 189213910 189214365 -28822793 - LTR19A LTR ERV1 -45 441 1 309 213 125 12 chr3 189214365 189214418 -28822740 - AluY SINE Alu -238 63 2 298 154 9 100 chr3 189214422 189214467 -28822691 - L1P LINE L1 -3775 2371 2324 2165 99 0 14 chr3 189214467 189214788 -28822370 + AluSc SINE Alu 1 317 0 298 154 9 100 chr3 189214788 189214851 -28822307 - L1P LINE L1 -3822 2324 2272 5360 24 5 2 chr3 189214858 189215486 -28821672 - L1PA4 LINE L1 -8 6147 5518 560 45 0 0 chr3 189215486 189215553 -28821605 - MER30B DNA MER1_type -156 74 8 403 300 68 41 chr3 189215567 189215860 -28821298 - L1ME LINE L1 -1237 4909 4609 28 61 0 0 chr3 189215941 189215990 -28821168 + AT_rich Low_complexity Low_complexity 1 49 0 730 267 65 34 chr3 189216062 189216285 -28820873 - L1MC4 LINE L1 -146 7896 7658 1586 165 13 52 chr3 189216285 189216594 -28820564 - AluJb SINE Alu -15 297 1 730 267 65 34 chr3 189216594 189216692 -28820466 - L1MC4 LINE L1 -384 7658 7565 545 186 8 8 chr3 189216693 189216822 -28820336 - L1MA5 LINE L1 -5 6477 6349 212 155 0 56 chr3 189216850 189216921 -28820237 + (TA)n Simple_repeat Simple_repeat 1 67 0 1307 130 10 0 chr3 189216930 189217138 -28820020 + L1MA4 LINE L1 5783 5992 -308 13447 202 66 10 chr3 189217167 189217666 -28819492 - L1MA5 LINE L1 -562 5920 5450 1606 168 44 77 chr3 189217666 189218054 -28819104 - THE1C LTR MaLR 0 375 1 9181 140 9 48 chr3 189218054 189219695 -28817463 - THE1C-int LTR MaLR 0 1580 4 1806 167 44 19 chr3 189219698 189220064 -28817094 - THE1C LTR MaLR 0 375 1 13447 202 66 10 chr3 189220064 189221394 -28815764 - L1MA5 LINE L1 -1033 5449 4195 243 0 0 0 chr3 189221394 189221421 -28815737 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 13447 202 66 10 chr3 189221421 189225142 -28812016 - L1MA5 LINE L1 -2287 4195 15 571 216 234 31 chr3 189225155 189225354 -28811804 - L1MC4a LINE L1 -318 7490 7240 1676 203 88 8 chr3 189225354 189225754 -28811404 + MSTB1 LTR MaLR 1 432 0 571 216 234 31 chr3 189225754 189225776 -28811382 - L1MC4a LINE L1 -568 7240 7224 900 254 29 14 chr3 189225799 189226079 -28811079 - L1MC4 LINE L1 -953 7089 6806 5687 195 14 7 chr3 189226334 189227615 -28809543 - L1MC1 LINE L1 -11 6322 5029 1057 244 152 0 chr3 189227598 189227914 -28809244 - L1MC4 LINE L1 -1212 6830 6467 * 207 231 0 0 chr3 189229097 189229136 -28808022 - MER5A DNA MER1_type -1 188 150 198 279 38 51 chr3 189229134 189229213 -28807945 + MER5A DNA MER1_type 112 189 0 * 2064 134 0 10 chr3 189230327 189230632 -28806526 + AluSc SINE Alu 1 302 -7 585 350 69 49 chr3 189231369 189231775 -28805383 + LTR33 LTR ERVL 23 436 -85 210 118 0 0 chr3 189232559 189232593 -28804565 + (CA)n Simple_repeat Simple_repeat 2 35 0 231 254 16 0 chr3 189233472 189233535 -28803623 + L3b LINE CR1 1160 1223 -360 322 285 49 0 chr3 189233782 189233905 -28803253 - MER103 DNA DNA -2 164 36 13564 149 41 5 chr3 189234324 189236658 -28800500 - Tigger1 DNA MER2_type 0 2418 1 794 227 0 18 chr3 189237865 189238028 -28799130 + FRAM SINE Alu 1 159 -17 199 0 31 31 chr3 189238073 189238105 -28799053 + (TA)n Simple_repeat Simple_repeat 1 32 0 315 213 0 0 chr3 189239490 189239570 -28797588 + (TA)n Simple_repeat Simple_repeat 1 80 0 2791 3 0 10 chr3 189239753 189240062 -28797096 + AluYa5 SINE Alu 1 306 -5 336 284 0 0 chr3 189240220 189240301 -28796857 - MIR SINE MIR -120 142 62 453 393 38 3 chr3 189240513 189240803 -28796355 + L2 LINE L2 1146 1445 -1869 43932 41 2 1 chr3 189240829 189246969 -28790189 - L1PA4 LINE L1 0 6155 7 2121 81 42 7 chr3 189246970 189247253 -28789905 - AluY SINE Alu -18 293 1 268 173 0 0 chr3 189247440 189247492 -28789666 - MLT2B1 LTR ERVL 0 520 469 1832 174 31 0 chr3 189247531 189247852 -28789306 - Tigger1 DNA MER2_type 0 2418 2088 1179 189 46 56 chr3 189247855 189248140 -28789018 - AluJb SINE Alu -4 308 27 9410 135 96 23 chr3 189248157 189249892 -28787266 - Tigger1 DNA MER2_type -335 2083 223 1368 207 75 22 chr3 189249893 189250249 -28786909 - MSTB LTR MaLR -1 374 1 1115 198 0 9 chr3 189250249 189250471 -28786687 - Tigger1 DNA MER2_type -2198 220 1 258 156 0 0 chr3 189250475 189250520 -28786638 + (TA)n Simple_repeat Simple_repeat 2 46 0 1710 198 116 30 chr3 189250527 189250966 -28786192 - MLT2B1 LTR ERVL -41 479 3 22 35 0 0 chr3 189250968 189250997 -28786161 + AT_rich Low_complexity Low_complexity 1 29 0 589 287 157 0 chr3 189251114 189251330 -28785828 + MIR SINE MIR 2 251 -11 541 252 34 78 chr3 189251356 189251562 -28785596 - LTR33 LTR ERVL -31 490 294 404 375 49 12 chr3 189251682 189251927 -28785231 - LTR33 LTR ERVL -247 274 21 225 154 0 0 chr3 189251941 189251980 -28785178 + (CAT)n Simple_repeat Simple_repeat 3 41 0 896 324 119 68 chr3 189252166 189253021 -28784137 - L2 LINE L2 -417 2897 1999 252 59 0 0 chr3 189253021 189253055 -28784103 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 203 200 0 67 chr3 189253062 189253122 -28784036 - L2 LINE L2 -1288 2026 1971 234 305 113 23 chr3 189253146 189253278 -28783880 + L2 LINE L2 1564 1683 -1631 186 71 0 0 chr3 189253278 189253306 -28783852 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 234 305 113 23 chr3 189253306 189253429 -28783729 + L2 LINE L2 1683 1842 -1472 368 292 36 0 chr3 189253435 189253572 -28783586 - MLT1L LTR MaLR -6 609 468 181 328 72 40 chr3 189253891 189254016 -28783142 + L2 LINE L2 3182 3310 -3 30 45 0 0 chr3 189254800 189254844 -28782314 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr3 189255027 189255048 -28782110 + AT_rich Low_complexity Low_complexity 1 21 0 183 42 0 0 chr3 189255316 189255340 -28781818 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 263 315 110 0 chr3 189256154 189256281 -28780877 - MIR SINE MIR -37 225 85 203 348 163 0 chr3 189256597 189256738 -28780420 + MIR SINE MIR 44 207 -55 692 241 215 0 chr3 189256740 189257005 -28780153 - MER5C DNA MER1_type -2 322 1 257 217 67 0 chr3 189257005 189257060 -28780098 + L2 LINE L2 3241 3299 -14 202 268 18 0 chr3 189258286 189258342 -28778816 + (TTA)n Simple_repeat Simple_repeat 2 58 0 282 259 0 0 chr3 189258392 189258446 -28778712 + Charlie1 DNA MER1_type 2 55 -2706 * 1315 225 40 27 chr3 189258441 189258846 -28778312 + Charlie1 DNA MER1_type 2352 2761 0 395 302 98 6 chr3 189258917 189259135 -28778023 - MIR SINE MIR 0 262 19 2370 86 3 0 chr3 189259204 189259506 -28777652 - AluSp SINE Alu -10 303 1 226 297 31 0 chr3 189260917 189260981 -28776177 - L2 LINE L2 -17 3296 3231 391 231 131 75 chr3 189261095 189261294 -28775864 + MER63A DNA MER1_type 1 210 0 536 268 111 70 chr3 189261752 189262364 -28774794 - L1ME4a LINE L1 -6 6115 5479 224 292 28 14 chr3 189262425 189262497 -28774661 + MIR SINE MIR 177 249 -13 383 250 226 0 chr3 189262514 189262638 -28774520 - MLT1J2 LTR MaLR -54 396 245 276 313 54 42 chr3 189262823 189262989 -28774169 + L2 LINE L2 3146 3313 0 24 0 0 0 chr3 189263993 189264017 -28773141 + AT_rich Low_complexity Low_complexity 1 24 0 742 218 0 0 chr3 189264425 189264572 -28772586 - L1MB5 LINE L1 -71 6103 5957 225 258 89 40 chr3 189264595 189264719 -28772439 - L1MC4 LINE L1 -10 8032 7903 38 61 0 0 chr3 189264720 189264786 -28772372 + AT_rich Low_complexity Low_complexity 1 66 0 219 382 76 17 chr3 189264861 189265099 -28772059 + L2 LINE L2 2652 2903 -411 749 264 97 9 chr3 189265260 189265487 -28771671 + MIR SINE MIR 5 251 -11 2579 172 17 9 chr3 189265985 189266445 -28770713 - MLT1C LTR MaLR -3 464 1 23 0 0 0 chr3 189267255 189267278 -28769880 + AT_rich Low_complexity Low_complexity 1 23 0 324 250 0 0 chr3 189268862 189268974 -28768184 + CT-rich Low_complexity Low_complexity 3 114 0 2360 102 0 0 chr3 189269453 189269758 -28767400 + AluSg SINE Alu 1 305 -5 308 359 57 6 chr3 189270298 189270457 -28766701 + L2 LINE L2 3147 3313 0 246 283 58 50 chr3 189271364 189271484 -28765674 - L2 LINE L2 -462 2852 2732 276 299 58 101 chr3 189271644 189272036 -28765122 - L2 LINE L2 -811 2503 2139 1534 187 20 30 chr3 189272036 189272335 -28764823 + AluJo SINE Alu 3 298 -14 276 299 58 101 chr3 189272335 189272477 -28764681 - L2 LINE L2 -1175 2139 1992 981 35 43 0 chr3 189272484 189272625 -28764533 - L1P LINE L1 -745 5423 5277 5148 90 14 1 chr3 189272625 189273345 -28763813 + L1PA10 LINE L1 5438 6167 -1 218 324 153 46 chr3 189273354 189273414 -28763744 - L2 LINE L2 -1332 1982 1930 1631 120 123 28 chr3 189273414 189273698 -28763460 + AluSx SINE Alu 1 311 -1 218 324 153 46 chr3 189273698 189274054 -28763104 - L2 LINE L2 -1384 1930 1521 195 42 0 0 chr3 189274634 189274658 -28762500 + (TTTTTA)n Simple_repeat Simple_repeat 2 25 0 550 235 220 85 chr3 189275724 189275924 -28761234 - MIR SINE MIR -22 240 14 23 0 0 0 chr3 189276056 189276079 -28761079 + AT_rich Low_complexity Low_complexity 1 23 0 655 275 116 52 chr3 189276112 189276820 -28760338 - L1ME4a LINE L1 -71 6050 5298 348 239 0 23 chr3 189277401 189277489 -28759669 - L2 LINE L2 -240 3073 2988 25 31 0 0 chr3 189278297 189278329 -28758829 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr3 189278400 189278424 -28758734 + AT_rich Low_complexity Low_complexity 1 24 0 186 147 29 0 chr3 189278495 189278529 -28758629 - L3 LINE CR1 -19 1558 1524 183 239 149 0 chr3 189278529 189278562 -28758596 - MIR3 SINE MIR -23 185 109 273 186 206 21 chr3 189278650 189278747 -28758411 - L1ME LINE L1 -498 5606 5492 349 276 204 38 chr3 189278851 189279115 -28758043 + L1 LINE L1 4744 5051 -1095 1780 144 64 64 chr3 189279730 189280090 -28757068 - THE1B LTR MaLR -4 360 1 578 273 153 14 chr3 189280167 189280652 -28756506 - L1ME LINE L1 -1438 4691 4137 2113 97 0 53 chr3 189280817 189281137 -28756021 - AluSx SINE Alu -9 303 1 368 225 14 0 chr3 189281162 189281233 -28755925 + Charlie4 DNA MER1_type 1886 1957 -4 27 0 0 0 chr3 189281618 189281645 -28755513 + AT_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chr3 189281828 189281855 -28755303 + AT_rich Low_complexity Low_complexity 1 27 0 399 298 121 25 chr3 189281857 189282618 -28754540 - L1ME LINE L1 -3065 3064 2231 365 306 84 56 chr3 189282649 189283041 -28754117 - L1ME LINE L1 -4080 2230 1828 480 325 94 8 chr3 189283196 189283791 -28753367 - L1MEd LINE L1 -4658 1652 967 14365 35 0 5 chr3 189283860 189286386 -28750772 - L1PA4 LINE L1 0 6155 3637 190 280 0 0 chr3 189286462 189286512 -28750646 + L2 LINE L2 2202 2251 -1063 487 278 120 43 chr3 189286801 189287035 -28750123 + MIR SINE MIR 11 262 0 478 347 40 10 chr3 189287827 189288026 -28749132 - MIR SINE MIR -12 250 46 793 306 24 8 chr3 189288301 189288553 -28748605 - MIR SINE MIR -1 261 6 23 54 0 0 chr3 189288674 189288711 -28748447 + AT_rich Low_complexity Low_complexity 1 37 0 252 122 0 0 chr3 189288894 189288935 -28748223 + (TG)n Simple_repeat Simple_repeat 1 41 0 3326 255 57 22 chr3 189288969 189290450 -28746708 - L1ME LINE L1 -667 5495 3951 451 244 206 56 chr3 189290475 189290762 -28746396 - L1ME2 LINE L1 -8 6154 5825 181 275 58 14 chr3 189290915 189290984 -28746174 + L2 LINE L2 67 138 -3176 218 289 22 0 chr3 189291020 189291065 -28746093 - MER5A DNA MER1_type -134 55 10 23 0 0 0 chr3 189291173 189291196 -28745962 + AT_rich Low_complexity Low_complexity 1 23 0 2083 111 0 14 chr3 189291874 189292194 -28744964 + AluSq SINE Alu 1 316 0 15810 36 2 0 chr3 189292827 189295520 -28741638 - L1PA4 LINE L1 -1 6154 3457 228 347 68 90 chr3 189295536 189295758 -28741400 + L2 LINE L2 3037 3253 -19 1480 95 54 21 chr3 189295873 189296115 -28741043 - L1PA10 LINE L1 -1 6167 5918 38 39 0 0 chr3 189296411 189296463 -28740695 + AT_rich Low_complexity Low_complexity 1 52 0 207 69 0 0 chr3 189297855 189297884 -28739274 + (TG)n Simple_repeat Simple_repeat 2 30 0 225 238 0 0 chr3 189298049 189298091 -28739067 - L2 LINE L2 -12 3260 3219 26 82 0 0 chr3 189298288 189298349 -28738809 + AT_rich Low_complexity Low_complexity 1 61 0 331 310 170 72 chr3 189299308 189300724 -28736434 + L2 LINE L2 1714 3312 -1 1138 240 73 10 chr3 189301193 189301576 -28735582 + Charlie4a DNA MER1_type 97 503 -5 357 282 84 35 chr3 189302598 189302740 -28734418 + MIR SINE MIR 20 168 -94 1067 196 5 36 chr3 189304178 189304402 -28732756 + AluJb SINE Alu 76 292 -20 1036 215 65 8 chr3 189306002 189306249 -28730909 - L1MC1 LINE L1 -6 6327 6067 * 1987 155 117 18 chr3 189306242 189306687 -28730471 - L1MCa LINE L1 -5031 1395 907 1822 200 217 82 chr3 189306701 189307546 -28729612 - LTR28 LTR ERV1 -13 816 1 3827 219 45 21 chr3 189307547 189308417 -28728741 - L1MCa LINE L1 -5518 908 18 1796 69 4 9 chr3 189308517 189308748 -28728410 + AluSq SINE Alu 1 230 -83 1471 139 0 13 chr3 189309012 189309249 -28727909 - L1PB2 LINE L1 -4 6147 5914 4655 182 38 4 chr3 189309268 189310541 -28726617 - L1MB1 LINE L1 0 6168 4861 22 0 0 0 chr3 189310547 189310569 -28726589 + AT_rich Low_complexity Low_complexity 1 22 0 536 224 0 9 chr3 189310598 189310714 -28726444 - L1MB1 LINE L1 -1272 4874 4760 349 171 40 0 chr3 189310723 189310799 -28726359 - L1MB1 LINE L1 -2191 3955 3877 248 363 65 20 chr3 189311068 189311313 -28725845 + L2 LINE L2 2236 2491 -823 193 327 71 26 chr3 189311319 189311432 -28725726 + L2 LINE L2 2667 2784 -530 589 25 12 12 chr3 189312520 189312600 -28724558 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 558 314 80 45 chr3 189312626 189313113 -28724045 - L1MC/D LINE L1 -1991 5817 5314 233 219 15 15 chr3 189313159 189313296 -28723862 + (TA)n Simple_repeat Simple_repeat 2 138 0 320 111 19 0 chr3 189313298 189313352 -28723806 + (TG)n Simple_repeat Simple_repeat 1 55 0 6327 195 35 10 chr3 189313445 189314661 -28722497 + MSTA-int LTR MaLR 405 1651 0 2329 126 80 5 chr3 189314661 189315059 -28722099 + MSTA LTR MaLR 1 428 0 204 333 69 84 chr3 189315204 189315465 -28721693 - L2 LINE L2 0 3272 3016 220 208 42 0 chr3 189316043 189316091 -28721067 - MIR SINE MIR -160 102 53 371 234 56 28 chr3 189316466 189316573 -28720585 - MIR SINE MIR 0 262 153 11856 202 32 30 chr3 189316807 189317221 -28719937 - L1PB4 LINE L1 -82 6776 6364 2207 87 0 10 chr3 189317221 189317509 -28719649 - AluY SINE Alu -26 285 1 11856 202 32 30 chr3 189317509 189318686 -28718472 - L1PB4 LINE L1 -494 6364 5191 2384 79 0 19 chr3 189318686 189319002 -28718156 - AluY SINE Alu -1 310 1 11856 202 32 30 chr3 189319002 189320007 -28717151 - L1PB4 LINE L1 -1667 5191 4190 297 0 0 0 chr3 189320007 189320040 -28717118 + (TTG)n Simple_repeat Simple_repeat 1 33 0 11856 202 32 30 chr3 189320040 189321221 -28715937 - L1PB4 LINE L1 -2668 4190 2980 6221 120 49 11 chr3 189321237 189322169 -28714989 - L1MA3 LINE L1 -1 6304 5319 2471 70 0 0 chr3 189322169 189322470 -28714688 - AluY SINE Alu -7 304 4 6221 120 49 11 chr3 189322470 189322597 -28714561 - L1MA3 LINE L1 -986 5319 5198 * 7389 207 55 27 chr3 189322595 189324407 -28712751 - L1PB4 LINE L1 -3891 2957 1004 377 291 16 0 chr3 189324583 189324710 -28712448 - L1PB4 LINE L1 -5777 1072 944 2121 128 10 0 chr3 189324733 189325031 -28712127 - AluSx SINE Alu -11 301 1 193 286 114 0 chr3 189325072 189325142 -28712016 - MIR SINE MIR -74 188 111 24 0 0 0 chr3 189326132 189326156 -28711002 + AT_rich Low_complexity Low_complexity 1 24 0 234 0 0 0 chr3 189326341 189326367 -28710791 + (CA)n Simple_repeat Simple_repeat 2 27 0 181 235 137 0 chr3 189327204 189327255 -28709903 + L2 LINE L2 2279 2336 -978 305 241 0 0 chr3 189327384 189327442 -28709716 + Charlie5 DNA MER1_type 8 65 -2547 * 434 182 20 10 chr3 189327435 189327534 -28709624 + Charlie5 DNA MER1_type 2525 2624 0 624 305 40 5 chr3 189327537 189327737 -28709421 - MLT1I LTR MaLR -19 390 184 1742 182 0 0 chr3 189328478 189328774 -28708384 + AluSg SINE Alu 1 296 -14 312 309 162 0 chr3 189328781 189328917 -28708241 + MIR SINE MIR 22 179 -83 307 217 133 0 chr3 189329473 189329556 -28707602 - MIR SINE MIR -134 128 35 1675 208 96 77 chr3 189331476 189331986 -28705172 - MLT2B1 LTR ERVL 0 520 1 8787 173 41 4 chr3 189331986 189332260 -28704898 - ERVL-B1 LTR ERVL -7 5757 5495 291 28 0 0 chr3 189332260 189332296 -28704862 + (TG)n Simple_repeat Simple_repeat 2 37 0 8787 173 41 4 chr3 189332296 189334152 -28703006 - ERVL-B1 LTR ERVL -269 5495 3505 214 115 77 0 chr3 189334153 189334205 -28702953 + (TA)n Simple_repeat Simple_repeat 1 56 0 276 202 21 64 chr3 189334209 189334303 -28702855 - L1MC4 LINE L1 -1339 6703 6614 532 136 68 0 chr3 189334303 189334465 -28702693 + (TA)n Simple_repeat Simple_repeat 2 174 0 234 217 0 17 chr3 189334465 189334525 -28702633 - L1MCa LINE L1 -4362 2064 2006 230 186 70 47 chr3 189334512 189334598 -28702560 - L1MC4 LINE L1 -1339 6703 6616 * 316 181 63 0 chr3 189334598 189334725 -28702433 + (TA)n Simple_repeat Simple_repeat 1 135 0 3421 159 2 6 chr3 189334726 189335272 -28701886 - ERVL-B1 LTR ERVL -2271 3493 2950 648 313 0 5 chr3 189335272 189335470 -28701688 - MLT1I LTR MaLR -206 203 7 989 313 60 45 chr3 189336380 189337379 -28699779 - HAL1 LINE L1 -811 1696 683 366 387 48 41 chr3 189338504 189338946 -28698212 - L2 LINE L2 -20 3252 2808 719 328 139 37 chr3 189338988 189339036 -28698122 - L2 LINE L2 -559 2755 2713 297 0 0 0 chr3 189339036 189339069 -28698089 + (TG)n Simple_repeat Simple_repeat 1 33 0 719 328 139 37 chr3 189339069 189339833 -28697325 - L2 LINE L2 -601 2713 1860 1995 131 3 0 chr3 189339833 189340149 -28697009 - AluSq SINE Alu 0 317 1 4229 51 0 2 chr3 189340349 189340878 -28696280 + L1PA7 LINE L1 5623 6150 -4 294 337 0 0 chr3 189341161 189341253 -28695905 + L2 LINE L2 3221 3312 -1 225 191 0 0 chr3 189343528 189343575 -28693583 + (TA)n Simple_repeat Simple_repeat 1 47 0 333 275 26 79 chr3 189343577 189343766 -28693392 + MER112 DNA MER1_type 81 259 -1 334 107 0 0 chr3 189344143 189344199 -28692959 - L1MA2 LINE L1 0 6304 6249 27 62 0 0 chr3 189344979 189345027 -28692131 + AT_rich Low_complexity Low_complexity 1 48 0 291 362 26 20 chr3 189346481 189346633 -28690525 + MIR SINE MIR 29 181 -81 1620 179 62 3 chr3 189347244 189347568 -28689590 - MER61A LTR ERV1 0 343 1 277 299 213 0 chr3 189347703 189347843 -28689315 + MER5A DNA MER1_type 4 178 -11 445 314 94 67 chr3 189348065 189348406 -28688752 + L3 LINE CR1 1223 1572 -5 25 0 0 0 chr3 189348865 189348890 -28688268 + AT_rich Low_complexity Low_complexity 1 25 0 1742 207 170 59 chr3 189349187 189349916 -28687242 - L1ME2 LINE L1 -95 6864 6055 2766 268 115 44 chr3 189349924 189350242 -28686916 - L1ME2 LINE L1 -2145 4796 4502 1501 174 32 44 chr3 189350242 189350558 -28686600 - AluJb SINE Alu 0 312 1 2766 268 115 44 chr3 189350558 189351309 -28685849 - L1ME2 LINE L1 -2439 4502 3805 1525 189 39 0 chr3 189351309 189351594 -28685564 + AluJo SINE Alu 1 296 -16 2766 268 115 44 chr3 189351594 189353660 -28683498 - L1ME2 LINE L1 -3136 3805 1271 2286 41 45 10 chr3 189354719 189355010 -28682148 - AluY SINE Alu -10 301 1 316 171 24 12 chr3 189355098 189355180 -28681978 + GA-rich Low_complexity Low_complexity 1 83 0 222 328 0 0 chr3 189355182 189355240 -28681918 + polypurine Low_complexity Low_complexity 2 59 0 237 357 30 71 chr3 189356492 189356660 -28680498 - L2 LINE L2 -4 3268 3108 194 31 0 62 chr3 189356786 189356818 -28680340 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 2096 108 11 3 chr3 189357065 189357352 -28679806 + AluSc SINE Alu 3 291 -18 487 307 69 104 chr3 189357438 189357842 -28679316 + L2 LINE L2 2054 2443 -871 1582 292 30 25 chr3 189358424 189358955 -28678203 + L2 LINE L2 2440 2973 -341 424 300 116 69 chr3 189359218 189359581 -28677577 + MLT1I LTR MaLR 28 407 -2 278 292 229 0 chr3 189359672 189359768 -28677390 - L2 LINE L2 -5 3308 3191 33 0 0 0 chr3 189362380 189362413 -28674745 + AT_rich Low_complexity Low_complexity 1 33 0 833 103 39 7 chr3 189362739 189362894 -28674264 - L1MA8 LINE L1 -4 6287 6128 180 0 0 0 chr3 189362906 189362926 -28674232 + (TTCC)n Simple_repeat Simple_repeat 1 20 0 431 96 21 43 chr3 189362926 189363020 -28674138 + (TTTCC)n Simple_repeat Simple_repeat 3 94 0 1569 138 60 3 chr3 189363024 189363307 -28673851 - AluSq SINE Alu -14 299 1 317 140 70 0 chr3 189363308 189363365 -28673793 - L1MA8 LINE L1 -220 6071 6011 1964 100 13 20 chr3 189363448 189363749 -28673409 - AluY SINE Alu -12 299 1 27 0 0 0 chr3 189363956 189363983 -28673175 + AT_rich Low_complexity Low_complexity 1 27 0 26 0 0 0 chr3 189364167 189364193 -28672965 + AT_rich Low_complexity Low_complexity 1 26 0 410 327 28 33 chr3 189364248 189364462 -28672696 - HAL1 LINE L1 -1484 1023 811 239 313 13 98 chr3 189364926 189365150 -28672008 - L2 LINE L2 -224 3048 2844 233 277 223 11 chr3 189365235 189365329 -28671829 + MIR SINE MIR 32 145 -63 1928 138 3 3 chr3 189365483 189365774 -28671384 - AluSg SINE Alu -19 291 1 23 33 0 0 chr3 189366334 189366364 -28670794 + AT_rich Low_complexity Low_complexity 1 30 0 456 216 102 72 chr3 189366929 189367096 -28670062 - MER5B DNA MER1_type -5 173 2 230 380 23 8 chr3 189367110 189367239 -28669919 - L2 LINE L2 -577 2737 2607 229 283 179 58 chr3 189367909 189368135 -28669023 + MIR SINE MIR 14 262 0 237 243 47 0 chr3 189368231 189368338 -28668820 + (TA)n Simple_repeat Simple_repeat 2 113 0 208 119 0 48 chr3 189368413 189368455 -28668703 + (TTA)n Simple_repeat Simple_repeat 3 42 0 2470 74 0 0 chr3 189368554 189368865 -28668293 + AluY SINE Alu 1 311 0 40 21 0 0 chr3 189369199 189369246 -28667912 + AT_rich Low_complexity Low_complexity 1 47 0 362 364 23 17 chr3 189369500 189369673 -28667485 - L3 LINE CR1 -1029 548 375 1444 197 33 7 chr3 189369676 189369950 -28667208 - AluJo SINE Alu -31 281 1 201 108 0 0 chr3 189369961 189369998 -28667160 + (A)n Simple_repeat Simple_repeat 1 37 0 201 338 20 108 chr3 189370123 189370271 -28666887 - L3 LINE CR1 -1436 141 7 1275 200 35 6 chr3 189370730 189371045 -28666113 + MER33 DNA MER1_type 1 324 0 28 29 0 0 chr3 189371054 189371089 -28666069 + AT_rich Low_complexity Low_complexity 1 35 0 1979 178 90 75 chr3 189371090 189371568 -28665590 - MLT1D LTR MaLR 0 505 21 338 91 18 0 chr3 189372617 189372672 -28664486 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 2391 82 0 0 chr3 189372727 189373031 -28664127 + AluY SINE Alu 1 304 -7 1467 186 27 10 chr3 189373979 189374274 -28662884 + AluJo SINE Alu 8 307 -5 23 0 0 0 chr3 189374696 189374719 -28662439 + AT_rich Low_complexity Low_complexity 1 23 0 344 107 0 0 chr3 189374719 189374775 -28662383 - L1MA3 LINE L1 -5 6300 6245 222 200 0 0 chr3 189375449 189375489 -28661669 + CT-rich Low_complexity Low_complexity 1 40 0 216 283 0 0 chr3 189375713 189375759 -28661399 + L2 LINE L2 3224 3269 -3 216 388 99 5 chr3 189375757 189375958 -28661200 - L3 LINE CR1 -1121 456 237 24 0 0 0 chr3 189376580 189376604 -28660554 + AT_rich Low_complexity Low_complexity 1 24 0 2132 114 10 0 chr3 189380463 189380770 -28656388 - AluSg SINE Alu 0 310 1 369 232 61 127 chr3 189380846 189381027 -28656131 + MIR SINE MIR 16 184 -78 266 208 19 0 chr3 189381037 189381090 -28656068 - L2 LINE L2 0 3272 3219 640 332 24 21 chr3 189381135 189381482 -28655676 - L2 LINE L2 -190 3123 2770 500 261 33 6 chr3 189381482 189381662 -28655496 - HsTC2 DNA Tc2 -3 1895 1711 * 886 235 150 0 chr3 189381659 189381872 -28655286 - HsTC2 DNA Tc2 -1571 327 83 205 204 0 23 chr3 189382567 189382611 -28654547 + CT-rich Low_complexity Low_complexity 2 44 0 204 125 0 0 chr3 189382644 189382676 -28654482 + (TTC)n Simple_repeat Simple_repeat 2 33 0 258 268 49 34 chr3 189383211 189383332 -28653826 - MIR SINE MIR -65 143 21 1659 261 50 26 chr3 189383555 189384018 -28653140 + MLT1E LTR MaLR 120 593 0 264 157 0 59 chr3 189384117 189384168 -28652990 - MIR SINE MIR 0 262 215 227 318 47 12 chr3 189384126 189384211 -28652947 - L2 LINE L2 -12 3260 3173 * 217 156 89 0 chr3 189384195 189384240 -28652918 + L2 LINE L2 2130 2178 -1136 * 4755 47 15 7 chr3 189384428 189385026 -28652132 - L1PA5 LINE L1 0 6154 5552 2079 125 3 0 chr3 189385044 189385332 -28651826 + AluSx SINE Alu 1 289 -23 928 300 97 37 chr3 189385370 189385834 -28651324 + L2 LINE L2 2181 2672 -642 21 0 0 0 chr3 189386177 189386198 -28650960 + AT_rich Low_complexity Low_complexity 1 21 0 400 300 21 77 chr3 189386425 189386658 -28650500 - L1ME3A LINE L1 -218 5952 5733 582 301 115 14 chr3 189386707 189387086 -28650072 - L1ME3A LINE L1 -523 5641 5219 25 31 0 0 chr3 189387116 189387148 -28650010 + AT_rich Low_complexity Low_complexity 1 32 0 480 270 98 35 chr3 189387417 189387735 -28649423 - L1ME3A LINE L1 -1318 4828 4491 305 312 64 9 chr3 189387735 189387844 -28649314 - MIR SINE MIR -58 150 36 306 0 0 0 chr3 189388764 189388798 -28648360 + (T)n Simple_repeat Simple_repeat 1 34 0 440 209 0 93 chr3 189394847 189394976 -28642182 + L2 LINE L2 3197 3313 0 256 260 60 30 chr3 189397050 189397150 -28640008 - L2 LINE L2 -2 3311 3209 788 123 0 0 chr3 189397598 189397720 -28639438 - L1PA13 LINE L1 -16 6147 6026 2415 104 8 8 chr3 189398081 189398436 -28638722 - THE1A LTR MaLR 0 355 1 11679 98 2 0 chr3 189398436 189400013 -28637145 - THE1A-int LTR MaLR 0 1580 1 2271 130 8 8 chr3 189400013 189400368 -28636790 - THE1A LTR MaLR 0 355 1 234 326 101 7 chr3 189400854 189400992 -28636166 + MIR SINE MIR 110 260 -2 447 365 51 5 chr3 189401563 189401777 -28635381 + MIR SINE MIR 10 233 -29 25 0 0 0 chr3 189402060 189402085 -28635073 + AT_rich Low_complexity Low_complexity 1 25 0 1130 295 80 30 chr3 189402153 189402842 -28634316 - Charlie7 DNA MER1_type -1889 723 1 264 345 80 45 chr3 189402875 189403075 -28634083 + L2 LINE L2 2707 2913 -401 306 282 97 32 chr3 189403219 189403343 -28633815 - LTR16A LTR ERVL -162 288 157 955 236 15 5 chr3 189404094 189404297 -28632861 - MER82 DNA MER2_type 0 653 449 221 362 67 9 chr3 189404352 189404457 -28632701 + MIR SINE MIR 31 141 -121 234 0 0 0 chr3 189404557 189404583 -28632575 + (CA)n Simple_repeat Simple_repeat 2 27 0 353 261 33 0 chr3 189404584 189404676 -28632482 - MER82 DNA MER2_type -557 96 2 229 299 107 62 chr3 189405044 189405221 -28631937 + L2 LINE L2 3128 3312 -1 29 0 0 0 chr3 189405366 189405395 -28631763 + AT_rich Low_complexity Low_complexity 1 29 0 288 279 102 5 chr3 189405842 189406039 -28631119 - L1ME3A LINE L1 -234 5936 5721 435 284 104 40 chr3 189406370 189406592 -28630566 + MIR SINE MIR 14 249 -13 29 70 0 0 chr3 189411830 189411887 -28625271 + AT_rich Low_complexity Low_complexity 1 57 0 228 242 44 181 chr3 189412817 189412999 -28624159 - MIR SINE MIR -49 213 57 473 266 163 77 chr3 189413982 189414332 -28622826 - L2 LINE L2 0 3313 2934 2078 284 164 39 chr3 189414334 189415536 -28621622 - L2 LINE L2 -579 2735 1384 357 315 146 6 chr3 189415544 189415709 -28621449 - MIR SINE MIR -6 256 69 1290 261 35 25 chr3 189416666 189417060 -28620098 - MLT1C LTR MaLR 0 467 70 1632 189 10 79 chr3 189417061 189417479 -28619679 - MLT1B LTR MaLR 0 390 2 316 333 65 0 chr3 189417551 189417674 -28619484 - MIR SINE MIR -76 186 56 22 0 0 0 chr3 189418029 189418051 -28619107 + AT_rich Low_complexity Low_complexity 1 22 0 204 231 0 0 chr3 189418314 189418353 -28618805 + T-rich Low_complexity Low_complexity 4 42 0 23 0 0 0 chr3 189418693 189418716 -28618442 + AT_rich Low_complexity Low_complexity 1 23 0 222 234 0 0 chr3 189419151 189419198 -28617960 + T-rich Low_complexity Low_complexity 3 49 0 21 0 0 0 chr3 189420100 189420121 -28617037 + AT_rich Low_complexity Low_complexity 1 21 0 271 336 21 7 chr3 189420255 189420398 -28616760 - L2 LINE L2 -20 3293 3149 857 314 93 36 chr3 189421036 189421749 -28615409 + L2 LINE L2 2553 3304 -9 544 258 125 85 chr3 189422493 189423070 -28614088 - L1MC4a LINE L1 -1810 5998 5399 7178 162 24 29 chr3 189423412 189424272 -28612886 - L1PB4 LINE L1 0 6156 5293 2124 123 7 3 chr3 189424272 189424573 -28612585 - AluSx SINE Alu -10 302 1 7178 162 24 29 chr3 189424573 189426027 -28611131 - L1PB4 LINE L1 -863 5293 3844 944 242 74 103 chr3 189426154 189426629 -28610529 + MLT1G1 LTR MaLR 89 549 -46 340 309 23 3 chr3 189427423 189427599 -28609559 + MIR SINE MIR 25 257 -5 22 0 0 0 chr3 189428228 189428250 -28608908 + AT_rich Low_complexity Low_complexity 1 22 0 2677 83 0 50 chr3 189428309 189428706 -28608452 - MER51B LTR ERV1 0 377 1 252 320 109 16 chr3 189429147 189429275 -28607883 + MER5B DNA MER1_type 26 165 -13 250 237 11 65 chr3 189429410 189429503 -28607655 + MIR SINE MIR 125 212 -50 831 264 63 28 chr3 189429687 189430005 -28607153 - HAL1 LINE L1 -2118 389 61 208 91 45 0 chr3 189430228 189430272 -28606886 + GA-rich Low_complexity Low_complexity 4 49 0 260 224 41 41 chr3 189431299 189431397 -28605761 + Charlie7 DNA MER1_type 2473 2570 -42 23 33 0 0 chr3 189432097 189432127 -28605031 + AT_rich Low_complexity Low_complexity 1 30 0 234 91 0 0 chr3 189432229 189432262 -28604896 + (TG)n Simple_repeat Simple_repeat 2 34 0 22 35 0 0 chr3 189432835 189432864 -28604294 + AT_rich Low_complexity Low_complexity 1 29 0 296 336 58 10 chr3 189433358 189433462 -28603696 + MIR SINE MIR 42 150 -58 403 324 21 28 chr3 189433784 189433929 -28603229 - MIR SINE MIR -102 160 17 338 297 128 27 chr3 189434761 189434909 -28602249 + MIR3 SINE MIR 28 190 -18 602 223 114 33 chr3 189435172 189435356 -28601802 + MER20 DNA MER1_type 1 199 -20 479 314 46 6 chr3 189435552 189435727 -28601431 + MIR SINE MIR 7 188 -74 364 283 93 89 chr3 189437079 189437329 -28599829 - MIR SINE MIR -12 250 4 22 0 0 0 chr3 189437333 189437355 -28599803 + AT_rich Low_complexity Low_complexity 1 22 0 197 285 106 65 chr3 189437391 189437514 -28599644 + L2 LINE L2 3182 3309 -4 2354 124 5 18 chr3 189437572 189437952 -28599206 + THE1C LTR MaLR 1 375 0 23 0 0 0 chr3 189438668 189438691 -28598467 + AT_rich Low_complexity Low_complexity 1 23 0 422 283 62 107 chr3 189439300 189439834 -28597324 - L1ME4a LINE L1 -11 6110 5601 884 246 29 14 chr3 189439834 189440110 -28597048 - L1MD3 LINE L1 0 7995 7716 1990 127 0 10 chr3 189440119 189440410 -28596748 - AluSg SINE Alu -22 288 1 191 326 0 22 chr3 189440550 189440596 -28596562 - L2 LINE L2 -101 3171 3127 221 259 46 114 chr3 189441019 189441089 -28596069 + MIR SINE MIR 63 121 -141 2310 99 0 13 chr3 189441089 189441403 -28595755 - AluSx SINE Alu -2 310 1 221 259 46 114 chr3 189441403 189441463 -28595695 + MIR SINE MIR 121 184 -78 189 308 183 0 chr3 189441575 189441695 -28595463 - L2 LINE L2 -557 2757 2616 1656 206 102 23 chr3 189441747 189442178 -28594980 - MLT1C LTR MaLR -2 465 1 1261 160 84 4 chr3 189443699 189443936 -28593222 + AluJb SINE Alu 3 258 -54 248 304 80 0 chr3 189444171 189444283 -28592875 - MIR SINE MIR -65 143 22 2368 70 0 0 chr3 189444371 189444657 -28592501 + AluY SINE Alu 1 286 -25 195 42 0 0 chr3 189444661 189444685 -28592473 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 223 364 36 7 chr3 189444978 189445118 -28592040 + MIR SINE MIR 86 229 -33 419 278 46 0 chr3 189446052 189446160 -28590998 - MIR SINE MIR -72 190 78 2547 78 56 3 chr3 189446226 189446584 -28590574 - MER51B LTR ERV1 0 377 1 185 263 0 0 chr3 189446806 189446844 -28590314 - L2 LINE L2 -17 3296 3259 413 270 191 0 chr3 189446849 189446975 -28590183 - MIR SINE MIR -108 154 5 30 27 0 0 chr3 189447384 189447421 -28589737 + AT_rich Low_complexity Low_complexity 1 37 0 29 28 0 0 chr3 189447544 189447580 -28589578 + AT_rich Low_complexity Low_complexity 1 36 0 658 210 6 36 chr3 189448134 189448301 -28588857 + L1MD2 LINE L1 5971 6132 -227 414 94 0 0 chr3 189448302 189448366 -28588792 + (TC)n Simple_repeat Simple_repeat 2 65 0 315 0 0 0 chr3 189448366 189448401 -28588757 + (CA)n Simple_repeat Simple_repeat 1 35 0 1007 162 5 5 chr3 189448403 189448594 -28588564 + L1MD2 LINE L1 6153 6343 -16 228 67 0 0 chr3 189448597 189448627 -28588531 + (TAA)n Simple_repeat Simple_repeat 1 30 0 27 49 0 0 chr3 189449102 189449143 -28588015 + AT_rich Low_complexity Low_complexity 1 41 0 243 306 16 0 chr3 189449388 189449450 -28587708 + L2 LINE L2 3247 3309 -4 23 33 0 0 chr3 189449905 189449935 -28587223 + AT_rich Low_complexity Low_complexity 1 30 0 184 395 70 13 chr3 189450241 189450398 -28586760 - MIR SINE MIR -69 193 28 347 316 27 131 chr3 189450676 189451049 -28586109 - L2 LINE L2 -6 3266 2933 362 275 69 61 chr3 189451170 189451519 -28585639 - L2 LINE L2 -575 2739 2331 414 319 44 32 chr3 189451904 189452155 -28585003 - L2 LINE L2 -2520 794 541 444 276 145 27 chr3 189454119 189454340 -28582818 + MIR SINE MIR 15 261 -1 377 298 63 29 chr3 189454515 189454720 -28582438 + MIR SINE MIR 51 262 0 2361 85 0 7 chr3 189454786 189455092 -28582066 + AluSc SINE Alu 1 304 -5 985 31 86 0 chr3 189455149 189455277 -28581881 + MER85 DNA T2_type 1 139 0 25 0 0 0 chr3 189455557 189455582 -28581576 + AT_rich Low_complexity Low_complexity 1 25 0 308 293 131 35 chr3 189456251 189456449 -28580709 - MIR SINE MIR -32 230 14 2249 98 3 0 chr3 189459151 189459448 -28577710 + AluSg SINE Alu 1 298 -12 1469 260 41 24 chr3 189459680 189460280 -28576878 - MER20B DNA MER1_type 0 783 125 205 321 79 47 chr3 189462312 189462502 -28574656 - L2 LINE L2 -54 3259 3064 24 0 0 0 chr3 189467967 189467991 -28569167 + AT_rich Low_complexity Low_complexity 1 24 0 1330 193 29 11 chr3 189468310 189468590 -28568568 - AluJb SINE Alu -17 285 1 204 216 0 0 chr3 189469123 189469160 -28567998 + CT-rich Low_complexity Low_complexity 2 38 0 212 59 29 0 chr3 189469760 189469794 -28567364 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 250 182 0 159 chr3 189469798 189469886 -28567272 + MIR SINE MIR 79 152 -110 2256 84 3 10 chr3 189470009 189470308 -28566850 - AluSp SINE Alu -16 297 1 441 365 51 5 chr3 189471330 189471544 -28565614 + MIR SINE MIR 10 233 -29 23 0 0 0 chr3 189471827 189471850 -28565308 + AT_rich Low_complexity Low_complexity 1 23 0 1195 295 80 30 chr3 189471920 189472609 -28564549 - Charlie7 DNA MER1_type -1889 723 1 266 370 65 30 chr3 189472642 189472842 -28564316 + L2 LINE L2 2707 2913 -401 297 282 97 32 chr3 189472986 189473110 -28564048 - LTR16A LTR ERVL -162 288 157 957 236 15 5 chr3 189473861 189474064 -28563094 - MER82 DNA MER2_type 0 653 449 221 362 67 9 chr3 189474119 189474224 -28562934 + MIR SINE MIR 31 141 -121 234 0 0 0 chr3 189474324 189474350 -28562808 + (CA)n Simple_repeat Simple_repeat 2 27 0 359 261 33 0 chr3 189474351 189474443 -28562715 - MER82 DNA MER2_type -557 96 2 238 299 107 62 chr3 189474811 189474988 -28562170 + L2 LINE L2 3128 3312 -1 29 0 0 0 chr3 189475132 189475161 -28561997 + AT_rich Low_complexity Low_complexity 1 29 0 311 262 55 56 chr3 189475608 189475826 -28561332 - L1ME3A LINE L1 -234 5936 5707 399 299 46 29 chr3 189476136 189476310 -28560848 + MIR SINE MIR 14 190 -72 29 70 0 0 chr3 189481594 189481651 -28555507 + AT_rich Low_complexity Low_complexity 1 57 0 235 242 44 181 chr3 189482581 189482763 -28554395 - MIR SINE MIR -49 213 57 480 266 163 77 chr3 189483748 189484098 -28553060 - L2 LINE L2 0 3313 2934 2078 284 164 39 chr3 189484100 189485302 -28551856 - L2 LINE L2 -579 2735 1384 357 315 146 6 chr3 189485310 189485475 -28551683 - MIR SINE MIR -6 256 69 1290 261 35 25 chr3 189486432 189486826 -28550332 - MLT1C LTR MaLR 0 467 70 1632 189 10 79 chr3 189486827 189487245 -28549913 - MLT1B LTR MaLR 0 390 2 316 333 65 0 chr3 189487317 189487440 -28549718 - MIR SINE MIR -76 186 56 22 0 0 0 chr3 189487795 189487817 -28549341 + AT_rich Low_complexity Low_complexity 1 22 0 204 231 0 0 chr3 189488080 189488119 -28549039 + T-rich Low_complexity Low_complexity 4 42 0 23 0 0 0 chr3 189488459 189488482 -28548676 + AT_rich Low_complexity Low_complexity 1 23 0 222 234 0 0 chr3 189488917 189488964 -28548194 + T-rich Low_complexity Low_complexity 3 49 0 21 0 0 0 chr3 189489866 189489887 -28547271 + AT_rich Low_complexity Low_complexity 1 21 0 271 336 21 7 chr3 189490021 189490164 -28546994 - L2 LINE L2 -20 3293 3149 857 314 93 36 chr3 189490802 189491515 -28545643 + L2 LINE L2 2553 3304 -9 1597 190 3 7 chr3 189492313 189492608 -28544550 - AluJo SINE Alu -7 305 12 834 247 0 0 chr3 189493049 189493227 -28543931 + MER45A DNA AcHobo 1 178 0 220 339 113 9 chr3 189493494 189493609 -28543549 - L2 LINE L2 -1 3271 3145 1045 262 36 0 chr3 189493628 189493876 -28543282 - MIR SINE MIR -1 261 5 278 314 74 80 chr3 189494162 189494500 -28542658 - L2 LINE L2 -530 2784 2449 290 339 116 25 chr3 189497629 189497906 -28539252 - L2 LINE L2 -337 2977 2676 312 302 77 15 chr3 189498208 189498365 -28538793 + MIR3 SINE MIR 32 201 -7 956 205 24 10 chr3 189500176 189500381 -28536777 + MER3 DNA MER1_type 2 209 0 377 138 0 0 chr3 189501238 189501303 -28535855 - L1MA9 LINE L1 0 6312 6248 2307 161 48 11 chr3 189501303 189501745 -28535413 - L1MA9 LINE L1 -283 6029 5572 32 35 0 18 chr3 189502793 189502829 -28534329 + AT_rich Low_complexity Low_complexity 1 37 -19 1994 121 0 0 chr3 189502829 189503094 -28534064 - AluSx SINE Alu -27 285 21 32 35 0 18 chr3 189503094 189503114 -28534044 + AT_rich Low_complexity Low_complexity 37 56 0 703 167 14 22 chr3 189503398 189503536 -28533622 - AluJo SINE Alu -175 137 1 25 31 0 0 chr3 189503592 189503624 -28533534 + AT_rich Low_complexity Low_complexity 1 32 0 211 184 0 0 chr3 189505550 189505588 -28531570 + (TG)n Simple_repeat Simple_repeat 2 39 0 237 33 0 0 chr3 189506958 189506988 -28530170 + (T)n Simple_repeat Simple_repeat 1 30 0 500 297 27 0 chr3 189507158 189507306 -28529852 - L2 LINE L2 -459 2855 2704 25 31 0 0 chr3 189508382 189508414 -28528744 + AT_rich Low_complexity Low_complexity 1 32 0 252 225 61 25 chr3 189510504 189510583 -28526575 - MIR SINE MIR -66 142 69 36 70 0 0 chr3 189512562 189512633 -28524525 + AT_rich Low_complexity Low_complexity 1 71 0 243 254 0 40 chr3 189513976 189514102 -28523056 + CT-rich Low_complexity Low_complexity 3 123 0 644 294 164 45 chr3 189514462 189515426 -28521732 - L1MC4 LINE L1 -41 8001 6882 1797 123 88 7 chr3 189515426 189515711 -28521447 - AluSx SINE Alu -4 308 1 644 294 164 45 chr3 189515711 189515877 -28521281 - L1MC4 LINE L1 -1160 6882 6737 971 235 14 23 chr3 189515886 189516103 -28521055 + MER58A DNA MER1_type 2 216 -8 258 32 0 0 chr3 189516134 189516165 -28520993 + (TC)n Simple_repeat Simple_repeat 1 31 0 2636 295 88 29 chr3 189516197 189517624 -28519534 + L1ME1 LINE L1 37 1546 -4850 582 180 0 0 chr3 189517877 189517966 -28519192 - FLAM_A SINE Alu -26 116 28 235 287 93 19 chr3 189520318 189520426 -28516732 + L1ME1 LINE L1 1577 1692 -4704 481 329 6 6 chr3 189520429 189520596 -28516562 - L1MEc LINE L1 -5760 636 470 941 142 6 0 chr3 189520601 189520763 -28516395 + L1MA4 LINE L1 6132 6294 -6 2999 232 40 28 chr3 189520763 189522260 -28514898 + L1ME1 LINE L1 2042 4803 -1412 2005 245 111 22 chr3 189522260 189522683 -28514475 + L1ME1 LINE L1 5189 5573 -662 2166 144 0 0 chr3 189522683 189522995 -28514163 - AluSx SINE Alu 0 312 1 2005 245 111 22 chr3 189522995 189523447 -28513711 + L1ME1 LINE L1 5573 6146 -89 406 191 0 0 chr3 189523544 189523633 -28513525 + L1MA10 LINE L1 6244 6332 -2 544 258 125 85 chr3 189524134 189524711 -28512447 - L1MC4a LINE L1 -1810 5998 5399 7178 162 24 29 chr3 189525053 189525913 -28511245 - L1PB4 LINE L1 0 6156 5293 2124 123 7 3 chr3 189525913 189526214 -28510944 - AluSx SINE Alu -10 302 1 7178 162 24 29 chr3 189526214 189527668 -28509490 - L1PB4 LINE L1 -863 5293 3844 944 242 74 103 chr3 189527795 189528270 -28508888 + MLT1G1 LTR MaLR 89 549 -46 340 309 23 3 chr3 189529066 189529242 -28507916 + MIR SINE MIR 25 257 -5 22 0 0 0 chr3 189529871 189529893 -28507265 + AT_rich Low_complexity Low_complexity 1 22 0 2677 83 0 50 chr3 189529952 189530349 -28506809 - MER51B LTR ERV1 0 377 1 252 320 109 16 chr3 189530790 189530918 -28506240 + MER5B DNA MER1_type 26 165 -13 250 237 11 65 chr3 189531053 189531146 -28506012 + MIR SINE MIR 125 212 -50 831 264 63 28 chr3 189531330 189531648 -28505510 - HAL1 LINE L1 -2118 389 61 208 91 45 0 chr3 189531871 189531915 -28505243 + GA-rich Low_complexity Low_complexity 4 49 0 260 224 41 41 chr3 189532942 189533040 -28504118 + Charlie7 DNA MER1_type 2473 2570 -42 2089 120 7 0 chr3 189534434 189534742 -28502416 - AluSp SINE Alu -3 310 1 2409 48 0 14 chr3 189536430 189536724 -28500434 + AluY SINE Alu 1 290 -21 1874 206 134 18 chr3 189536773 189537220 -28499938 + MLT1D LTR MaLR 7 505 0 285 283 177 9 chr3 189537317 189537430 -28499728 - MIR3 SINE MIR -17 191 60 2707 13 0 0 chr3 189537544 189537845 -28499313 + AluYa5 SINE Alu 1 301 -10 208 274 161 42 chr3 189537919 189538087 -28499071 - L2 LINE L2 -5 3308 3121 27 0 0 0 chr3 189539094 189539121 -28498037 + AT_rich Low_complexity Low_complexity 1 27 0 21 57 0 0 chr3 189539324 189539359 -28497799 + AT_rich Low_complexity Low_complexity 1 35 0 322 326 23 0 chr3 189542094 189542223 -28494935 - L1ME LINE L1 -375 5746 5615 237 196 0 0 chr3 189542536 189542587 -28494571 + (CA)n Simple_repeat Simple_repeat 2 52 0 316 255 10 41 chr3 189543050 189543148 -28494010 + MIR SINE MIR 66 160 -102 29 28 0 0 chr3 189543221 189543257 -28493901 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr3 189543799 189543821 -28493337 + AT_rich Low_complexity Low_complexity 1 22 0 1415 337 57 22 chr3 189543904 189544500 -28492658 - MER115 DNA AcHobo -76 617 1 550 335 36 36 chr3 189544833 189545137 -28492021 - MLT1I LTR MaLR 0 409 106 2311 104 0 3 chr3 189545257 189545565 -28491593 + AluSq SINE Alu 1 307 -6 21 0 0 0 chr3 189546393 189546414 -28490744 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 189547209 189547230 -28489928 + AT_rich Low_complexity Low_complexity 1 21 0 382 351 35 18 chr3 189547926 189548097 -28489061 - MIR SINE MIR -54 208 35 799 271 18 23 chr3 189548181 189548402 -28488756 + MIR SINE MIR 7 226 -36 29 47 0 0 chr3 189549274 189549317 -28487841 + AT_rich Low_complexity Low_complexity 1 43 0 447 311 108 0 chr3 189549358 189549525 -28487633 + MIR SINE MIR 74 258 -4 418 274 46 7 chr3 189550003 189550156 -28487002 + MIR SINE MIR 104 262 0 253 308 39 19 chr3 189550372 189550476 -28486682 - L2 LINE L2 -229 3043 2938 427 47 0 0 chr3 189553540 189553604 -28483554 + L1MA3 LINE L1 6242 6305 0 2575 147 15 4 chr3 189553749 189554204 -28482954 - L1MA4 LINE L1 -5 6295 5836 253 268 99 0 chr3 189554204 189554275 -28482883 + MER112 DNA MER1_type 180 257 -3 1906 169 3 0 chr3 189555571 189555878 -28481280 + AluJo SINE Alu 1 308 -4 245 337 11 33 chr3 189555885 189555977 -28481181 + MER5A DNA MER1_type 61 150 -39 227 284 105 11 chr3 189556481 189556576 -28480582 - L2 LINE L2 -4 3268 3165 194 345 23 46 chr3 189556687 189556774 -28480384 - L2 LINE L2 -258 3014 2930 4253 198 27 11 chr3 189607502 189609103 -28428055 - L1MB8 LINE L1 -9 6169 4545 282 385 30 6 chr3 189609365 189609534 -28427624 - L2 LINE L2 -374 2940 2768 182 173 0 19 chr3 189612032 189612084 -28425074 + CT-rich Low_complexity Low_complexity 2 52 0 414 255 111 39 chr3 189612137 189612290 -28424868 + MER5A DNA MER1_type 26 189 0 191 292 0 0 chr3 189613198 189613246 -28423912 - MIR SINE MIR -63 145 98 21 0 0 0 chr3 189614094 189614115 -28423043 + AT_rich Low_complexity Low_complexity 1 21 0 264 325 170 19 chr3 189614767 189614973 -28422185 + MIR SINE MIR 16 252 -10 368 329 48 107 chr3 189615008 189615297 -28421861 - L2 LINE L2 -16 3256 2985 21 0 0 0 chr3 189615509 189615530 -28421628 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 189616101 189616124 -28421034 + AT_rich Low_complexity Low_complexity 1 23 0 376 206 69 92 chr3 189616483 189616614 -28420544 + L1MDa LINE L1 2081 2208 -4332 303 229 0 29 chr3 189616617 189616687 -28420471 + MER21B LTR ERV1 1 68 -795 1723 237 101 11 chr3 189616721 189617156 -28420002 + MER21B LTR ERV1 19 492 -371 259 270 0 0 chr3 189617342 189617405 -28419753 + L2 LINE L2 3205 3267 -5 2076 138 0 0 chr3 189618955 189619253 -28417905 - AluSx SINE Alu -14 298 1 21 0 0 0 chr3 189619423 189619444 -28417714 + AT_rich Low_complexity Low_complexity 1 21 0 2171 143 10 20 chr3 189619654 189620047 -28417111 + MLT1B LTR MaLR 2 390 0 356 178 116 23 chr3 189620134 189620263 -28416895 - Charlie4 DNA MER1_type -3 1958 1818 394 200 0 12 chr3 189620427 189620512 -28416646 - Charlie4 DNA MER1_type -1836 125 42 218 298 137 95 chr3 189621134 189621302 -28415856 + MIR SINE MIR 32 206 -56 301 191 18 0 chr3 189621725 189621835 -28415323 + (TA)n Simple_repeat Simple_repeat 1 112 0 190 234 31 31 chr3 189621835 189621899 -28415259 + MIR SINE MIR 194 257 -5 1847 161 47 0 chr3 189622229 189622527 -28414631 - AluSx SINE Alu 0 312 1 424 278 0 46 chr3 189623764 189623872 -28413286 + MIR3 SINE MIR 87 189 -19 635 308 68 5 chr3 189626186 189626407 -28410751 - MIR SINE MIR -10 252 18 1372 293 185 14 chr3 189626737 189627537 -28409621 + L2 LINE L2 739 1675 -1639 2432 285 54 38 chr3 189627537 189628356 -28408802 + L2 LINE L2 2125 2930 -383 383 0 0 21 chr3 189628356 189628404 -28408754 + (TATAA)n Simple_repeat Simple_repeat 2 48 0 2432 285 54 38 chr3 189628404 189628452 -28408706 + L2 LINE L2 2930 2976 -337 1667 165 19 35 chr3 189628452 189628767 -28408391 - AluJb SINE Alu 0 312 3 2432 285 54 38 chr3 189628767 189629073 -28408085 + L2 LINE L2 2976 3313 0 32 67 0 0 chr3 189630686 189630746 -28406412 + AT_rich Low_complexity Low_complexity 1 60 0 790 262 79 8 chr3 189630932 189631199 -28405959 + L1MC4 LINE L1 6653 6938 -1104 506 257 62 99 chr3 189631775 189632369 -28404789 + L1MC5 LINE L1 7282 7851 -110 1490 191 17 89 chr3 189632369 189632772 -28404386 + MLT1A2 LTR MaLR 1 374 0 506 257 62 99 chr3 189632772 189632834 -28404324 + L1MC5 LINE L1 7851 7914 -47 212 245 19 0 chr3 189633454 189633507 -28403651 + GA-rich Low_complexity Low_complexity 4 57 0 21 0 0 0 chr3 189633774 189633795 -28403363 + AT_rich Low_complexity Low_complexity 1 21 0 1916 160 0 22 chr3 189635016 189635335 -28401823 + AluJo SINE Alu 1 312 0 21 0 0 0 chr3 189635646 189635667 -28401491 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr3 189636811 189636843 -28400315 + AT_rich Low_complexity Low_complexity 1 32 0 289 273 102 31 chr3 189638134 189638262 -28398896 - MIR SINE MIR -4 258 122 959 157 169 24 chr3 189639100 189639355 -28397803 + MER33 DNA MER1_type 3 294 -30 28 71 0 0 chr3 189639531 189639587 -28397571 + AT_rich Low_complexity Low_complexity 1 56 0 281 324 0 0 chr3 189639608 189639676 -28397482 + L2 LINE L2 3234 3301 -12 322 335 126 6 chr3 189640565 189640747 -28396411 + MIR SINE MIR 56 259 -3 1694 203 53 40 chr3 189640766 189641220 -28395938 - MLT1C LTR MaLR -2 465 6 205 204 0 23 chr3 189642668 189642712 -28394446 + CT-rich Low_complexity Low_complexity 2 44 0 204 125 0 0 chr3 189642745 189642777 -28394381 + (TTC)n Simple_repeat Simple_repeat 2 33 0 259 268 49 34 chr3 189643312 189643433 -28393725 - MIR SINE MIR -65 143 21 1647 261 50 26 chr3 189643656 189644119 -28393039 + MLT1E LTR MaLR 120 593 0 267 157 0 59 chr3 189644217 189644268 -28392890 - MIR SINE MIR 0 262 215 226 318 47 12 chr3 189644226 189644311 -28392847 - L2 LINE L2 -12 3260 3173 * 213 156 89 0 chr3 189644295 189644340 -28392818 + L2 LINE L2 2130 2178 -1136 * 22 35 0 0 chr3 189644510 189644539 -28392619 + AT_rich Low_complexity Low_complexity 1 29 0 3909 44 19 0 chr3 189644665 189645144 -28392014 - L1PA5 LINE L1 -115 6039 5552 2044 125 3 0 chr3 189645162 189645450 -28391708 + AluSx SINE Alu 1 289 -23 1231 288 102 33 chr3 189645488 189646036 -28391122 + L2 LINE L2 2181 2766 -548 886 235 150 0 chr3 189646095 189646308 -28390850 + HsTC2 DNA Tc2 83 327 -1571 500 261 33 6 chr3 189646305 189646485 -28390673 + HsTC2 DNA Tc2 1711 1895 -3 * 640 332 24 21 chr3 189646485 189646832 -28390326 + L2 LINE L2 2770 3123 -190 266 208 19 0 chr3 189646877 189646930 -28390228 + L2 LINE L2 3219 3272 0 369 232 61 127 chr3 189646940 189647121 -28390037 - MIR SINE MIR -78 184 16 2132 114 10 0 chr3 189647197 189647504 -28389654 + AluSg SINE Alu 1 310 0 194 345 23 46 chr3 189648703 189648790 -28388368 + L2 LINE L2 2930 3014 -258 245 337 11 33 chr3 189649501 189649593 -28387565 - MER5A DNA MER1_type -39 150 61 1906 169 3 0 chr3 189649600 189649907 -28387251 - AluJo SINE Alu -4 308 1 253 268 99 0 chr3 189651203 189651274 -28385884 - MER112 DNA MER1_type -3 257 180 2575 147 15 4 chr3 189651274 189651729 -28385429 + L1MA4 LINE L1 5836 6295 -5 427 47 0 0 chr3 189651874 189651938 -28385220 - L1MA3 LINE L1 0 6305 6242 253 308 39 19 chr3 189655004 189655108 -28382050 + L2 LINE L2 2938 3043 -229 418 274 46 7 chr3 189655324 189655477 -28381681 - MIR SINE MIR 0 262 104 447 311 108 0 chr3 189655955 189656122 -28381036 - MIR SINE MIR -4 258 74 29 47 0 0 chr3 189656163 189656206 -28380952 + AT_rich Low_complexity Low_complexity 1 43 0 799 271 18 23 chr3 189657078 189657299 -28379859 - MIR SINE MIR -36 226 7 372 351 35 18 chr3 189657383 189657554 -28379604 + MIR SINE MIR 35 208 -54 21 0 0 0 chr3 189658250 189658271 -28378887 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 189659066 189659087 -28378071 + AT_rich Low_complexity Low_complexity 1 21 0 2311 104 0 3 chr3 189659913 189660221 -28376937 - AluSq SINE Alu -6 307 1 550 335 36 36 chr3 189660341 189660645 -28376513 + MLT1I LTR MaLR 106 409 0 1415 337 57 22 chr3 189660978 189661574 -28375584 + MER115 DNA AcHobo 1 617 -76 22 0 0 0 chr3 189661657 189661679 -28375479 + AT_rich Low_complexity Low_complexity 1 22 0 277 289 68 62 chr3 189662786 189663108 -28374050 - L1MC4a LINE L1 -1745 6063 5740 341 355 100 29 chr3 189663185 189663534 -28373624 - L1MC4a LINE L1 -522 5640 5267 210 192 19 0 chr3 189663542 189663594 -28373564 + T-rich Low_complexity Low_complexity 4 56 0 21 0 0 0 chr3 189664110 189664131 -28373027 + AT_rich Low_complexity Low_complexity 1 21 0 315 0 0 0 chr3 189666698 189666733 -28370425 + (CA)n Simple_repeat Simple_repeat 2 36 0 238 253 137 42 chr3 189667064 189667159 -28369999 - L2 LINE L2 0 3313 3210 254 264 0 47 chr3 189667441 189667547 -28369611 + GA-rich Low_complexity Low_complexity 2 102 0 603 318 196 25 chr3 189667869 189668472 -28368686 + L3 LINE CR1 852 1557 -20 21 0 0 0 chr3 189668532 189668553 -28368605 + AT_rich Low_complexity Low_complexity 1 21 0 441 81 0 0 chr3 189668775 189668837 -28368321 + (TG)n Simple_repeat Simple_repeat 1 62 0 2260 111 0 0 chr3 189669812 189670119 -28367039 - AluSx SINE Alu -5 307 1 195 188 0 0 chr3 189670183 189670231 -28366927 + (TAG)n Simple_repeat Simple_repeat 1 48 0 227 232 192 8 chr3 189670247 189670372 -28366786 - MIR SINE MIR -13 249 102 21 0 0 0 chr3 189671123 189671144 -28366014 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr3 189671217 189671252 -28365906 + AT_rich Low_complexity Low_complexity 1 35 0 28 48 0 0 chr3 189671694 189671736 -28365422 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr3 189671877 189671899 -28365259 + AT_rich Low_complexity Low_complexity 1 22 0 1476 150 31 19 chr3 189672519 189672779 -28364379 - AluJb SINE Alu -29 283 21 200 295 199 60 chr3 189672909 189673190 -28363968 + L2 LINE L2 2657 2976 -338 189 156 200 0 chr3 189673840 189673885 -28363273 - MIR3 SINE MIR -32 176 123 180 191 170 0 chr3 189674030 189674077 -28363081 - MIR SINE MIR -68 140 86 22 56 0 0 chr3 189674146 189674182 -28362976 + AT_rich Low_complexity Low_complexity 1 36 0 374 376 64 8 chr3 189674336 189674570 -28362588 + MIR SINE MIR 4 250 -12 281 302 40 16 chr3 189674707 189674833 -28362325 + L2 LINE L2 2933 3061 -211 23 0 0 0 chr3 189675735 189675758 -28361400 + AT_rich Low_complexity Low_complexity 1 23 0 1999 130 0 0 chr3 189676087 189676371 -28360787 + AluSq SINE Alu 1 284 -29 525 317 145 62 chr3 189677362 189678044 -28359114 - L2 LINE L2 -5 3308 2554 25 51 0 0 chr3 189678995 189679034 -28358124 + AT_rich Low_complexity Low_complexity 1 39 0 266 332 157 28 chr3 189679128 189679345 -28357813 + MIR SINE MIR 18 262 0 514 304 88 32 chr3 189680765 189680982 -28356176 + MIR SINE MIR 13 241 -21 1346 127 48 0 chr3 189681129 189681357 -28355801 - L1MA6 LINE L1 -2 6298 6060 519 95 0 0 chr3 189681357 189681431 -28355727 + (TCTA)n Simple_repeat Simple_repeat 3 76 0 680 156 0 0 chr3 189681443 189681552 -28355606 - L1MA6 LINE L1 -532 5768 5660 21 36 0 0 chr3 189682029 189682057 -28355101 + AT_rich Low_complexity Low_complexity 1 28 0 2364 44 0 14 chr3 189683883 189684180 -28352978 + AluY SINE Alu 1 293 -18 226 319 25 0 chr3 189684338 189684457 -28352701 - L1MC/D LINE L1 -1874 5934 5813 392 240 86 109 chr3 189685797 189686135 -28351023 + L1MC4a LINE L1 5835 6164 -1644 266 274 33 85 chr3 189686195 189686348 -28350810 + MIR3 SINE MIR 22 166 -42 1940 138 0 0 chr3 189686505 189686788 -28350370 - AluSx SINE Alu -12 300 18 313 262 143 8 chr3 189686965 189687091 -28350067 - MIR SINE MIR -10 252 110 350 180 10 0 chr3 189687433 189687533 -28349625 + GA-rich Low_complexity Low_complexity 2 102 0 234 279 13 0 chr3 189688541 189688620 -28348538 + (TA)n Simple_repeat Simple_repeat 1 80 0 240 282 109 36 chr3 189688945 189689055 -28348103 + MER5A DNA MER1_type 71 188 -1 2196 99 3 3 chr3 189689685 189689989 -28347169 + AluSq SINE Alu 1 304 -9 222 37 0 0 chr3 189691097 189691124 -28346034 + (A)n Simple_repeat Simple_repeat 1 27 0 643 302 4 36 chr3 189691339 189691564 -28345594 - MIR SINE MIR -10 252 35 997 166 17 17 chr3 189691565 189691740 -28345418 + FAM SINE Alu 1 175 0 2084 128 3 10 chr3 189691806 189692118 -28345040 + AluSg SINE Alu 1 310 0 201 74 0 0 chr3 189692118 189692145 -28345013 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 321 283 6 98 chr3 189692325 189692538 -28344620 - MIR SINE MIR -51 211 14 305 176 29 0 chr3 189693040 189693108 -28344050 + (TATG)n Simple_repeat Simple_repeat 2 71 0 365 377 126 0 chr3 189693346 189693537 -28343621 - MIR SINE MIR -30 232 18 180 135 0 0 chr3 189693562 189693599 -28343559 + (TG)n Simple_repeat Simple_repeat 2 38 0 289 259 19 108 chr3 189693680 189693838 -28343320 - MIR SINE MIR -91 171 28 26 30 0 0 chr3 189694440 189694473 -28342685 + AT_rich Low_complexity Low_complexity 1 33 0 529 302 24 0 chr3 189694655 189694824 -28342334 + MIR3 SINE MIR 29 201 -7 371 332 87 64 chr3 189696718 189697257 -28339901 + L2 LINE L2 2692 3217 -55 214 94 0 38 chr3 189700557 189700610 -28336548 + (CAAAAA)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr3 189701322 189701343 -28335815 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 189702892 189702915 -28334243 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr3 189703403 189703432 -28333726 + AT_rich Low_complexity Low_complexity 1 29 0 1869 119 20 14 chr3 189705735 189706030 -28331128 - AluSq SINE Alu -15 298 2 32 67 0 0 chr3 189706126 189706186 -28330972 + AT_rich Low_complexity Low_complexity 1 60 0 1551 164 46 7 chr3 189706227 189706508 -28330650 + AluSx SINE Alu 3 294 -18 25 0 0 0 chr3 189707336 189707361 -28329797 + AT_rich Low_complexity Low_complexity 1 25 0 2133 116 3 0 chr3 189707635 189707928 -28329230 + AluSq SINE Alu 1 294 -19 378 0 0 0 chr3 189708654 189708696 -28328462 + (TG)n Simple_repeat Simple_repeat 2 43 0 258 220 0 0 chr3 189708696 189708755 -28328403 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 25 31 0 0 chr3 189708765 189708797 -28328361 + AT_rich Low_complexity Low_complexity 1 32 0 2140 92 0 34 chr3 189708893 189709207 -28327951 - AluSx SINE Alu 0 304 1 2628 14 0 0 chr3 189709383 189709674 -28327484 + AluYa5 SINE Alu 21 311 0 22 0 0 0 chr3 189709878 189709900 -28327258 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr3 189712349 189712384 -28324774 + AT_rich Low_complexity Low_complexity 1 35 0 234 128 0 0 chr3 189713518 189713557 -28323601 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 21 57 0 0 chr3 189715791 189715826 -28321332 + AT_rich Low_complexity Low_complexity 1 35 0 2163 118 3 10 chr3 189716915 189717228 -28319930 + AluSq SINE Alu 1 311 -2 1413 181 90 11 chr3 189718079 189718345 -28318813 + AluJb SINE Alu 1 287 -25 330 194 0 0 chr3 189718375 189718447 -28318711 + (TA)n Simple_repeat Simple_repeat 1 72 0 24 32 0 0 chr3 189718609 189718640 -28318518 + AT_rich Low_complexity Low_complexity 1 31 0 753 171 4 0 chr3 189719636 189719801 -28317357 + GSATX Satellite centromeric 1 165 -91 180 344 31 0 chr3 189720538 189720602 -28316556 - L2 LINE L2 -190 3082 3017 456 126 48 19 chr3 189720606 189720709 -28316449 + T-rich Low_complexity Low_complexity 4 109 0 1123 324 79 20 chr3 189720715 189720755 -28316403 + L2 LINE L2 1813 1849 -1465 2079 88 49 0 chr3 189720755 189721040 -28316118 - AluY SINE Alu -12 299 1 1123 324 79 20 chr3 189721040 189721594 -28315564 + L2 LINE L2 1849 2442 -872 71 85 0 0 chr3 189721609 189721785 -28315373 + AT_rich Low_complexity Low_complexity 1 176 0 572 269 52 52 chr3 189721847 189722059 -28315099 - MIR SINE MIR 0 262 51 450 323 125 32 chr3 189722161 189722638 -28314520 + L2 LINE L2 2683 3191 -122 223 369 131 0 chr3 189722858 189722988 -28314170 - L2 LINE L2 -470 2844 2698 183 100 0 0 chr3 189723721 189723751 -28313407 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 260 288 83 38 chr3 189723752 189723884 -28313274 - L2 LINE L2 -13 3300 3163 1591 59 41 9 chr3 189725616 189725837 -28311321 + AluY SINE Alu 79 306 -5 1489 196 55 15 chr3 189726099 189726425 -28310733 - MER44D DNA MER2_type 0 609 1 40 37 0 0 chr3 189728893 189728947 -28308211 + AT_rich Low_complexity Low_complexity 1 54 0 21 36 0 0 chr3 189730212 189730240 -28306918 + AT_rich Low_complexity Low_complexity 1 28 0 271 349 18 9 chr3 189730633 189730742 -28306416 - MIR3 SINE MIR -8 200 91 695 225 0 0 chr3 189730949 189731091 -28306067 + FLAM_A SINE Alu 1 142 0 200 335 131 44 chr3 189731127 189731333 -28305825 + L2 LINE L2 2734 2957 -357 196 231 44 99 chr3 189731471 189731562 -28305596 + L2 LINE L2 3152 3237 -76 1316 139 79 68 chr3 189731588 189731854 -28305304 + AluJo SINE Alu 26 294 -18 345 24 0 0 chr3 189731862 189731904 -28305254 + (CA)n Simple_repeat Simple_repeat 2 43 0 237 178 0 0 chr3 189731918 189731963 -28305195 + (TATATG)n Simple_repeat Simple_repeat 6 50 0 194 327 0 0 chr3 189733427 189733482 -28303676 + L2 LINE L2 3213 3267 -5 197 237 0 0 chr3 189733539 189733577 -28303581 - L2 LINE L2 -11 3302 3265 2166 129 0 0 chr3 189733684 189733987 -28303171 - AluSx SINE Alu -9 303 1 825 169 116 11 chr3 189734875 189735096 -28302062 + Tigger4(Zombi) DNA MER2_type 2 2730 -1 903 236 44 22 chr3 189735686 189735957 -28301201 - Charlie5 DNA MER1_type 0 2624 2348 709 206 11 27 chr3 189735965 189736149 -28301009 - Charlie5 DNA MER1_type -2430 182 2 235 128 266 9 chr3 189736236 189736345 -28300813 - Charlie7 DNA MER1_type -79 2533 2397 1136 232 71 32 chr3 189736562 189736902 -28300256 - Charlie7 DNA MER1_type -1945 667 315 21 57 0 0 chr3 189737735 189737770 -28299388 + AT_rich Low_complexity Low_complexity 1 35 0 301 261 23 0 chr3 189738564 189738652 -28298506 - MLT1I LTR MaLR -2 407 318 225 222 37 0 chr3 189738850 189738904 -28298254 - MLT1J1 LTR MaLR -321 125 70 489 353 95 45 chr3 189739264 189739774 -28297384 - L2 LINE L2 -3 3310 2776 187 291 78 85 chr3 189739836 189739977 -28297181 - L2 LINE L2 -205 3067 2928 324 0 0 0 chr3 189740098 189740134 -28297024 + (TG)n Simple_repeat Simple_repeat 1 36 0 2034 159 174 12 chr3 189740137 189740539 -28296619 - MLT2B2 LTR ERVL -47 468 2 963 290 191 25 chr3 189740912 189741826 -28295332 - L2 LINE L2 -5 3308 2238 1336 144 40 18 chr3 189741880 189742014 -28295144 - L1MA9 LINE L1 -22 6290 6160 342 45 0 0 chr3 189742014 189742058 -28295100 + (TG)n Simple_repeat Simple_repeat 2 45 0 1336 144 40 18 chr3 189742058 189742200 -28294958 - L1MA9 LINE L1 -152 6160 6008 21 0 0 0 chr3 189743091 189743112 -28294046 + AT_rich Low_complexity Low_complexity 1 21 0 1236 45 0 0 chr3 189743531 189743685 -28293473 - L1MA2 LINE L1 -423 5881 5728 961 238 34 59 chr3 189743686 189744073 -28293085 - MER20B DNA MER1_type -54 729 353 1370 207 26 45 chr3 189744422 189744731 -28292427 - AluJb SINE Alu -9 303 1 22 0 0 0 chr3 189745214 189745236 -28291922 + AT_rich Low_complexity Low_complexity 1 22 0 417 300 135 24 chr3 189745438 189745898 -28291260 - L1MC/D LINE L1 -2002 5806 5296 1456 187 66 0 chr3 189745979 189746268 -28290890 - AluJb SINE Alu -4 308 1 415 281 107 58 chr3 189746662 189746972 -28290186 - L1MC/D LINE L1 -1329 4817 4493 359 270 184 60 chr3 189747044 189747277 -28289881 - MIR SINE MIR 0 262 1 303 28 0 0 chr3 189748071 189748107 -28289051 + (CA)n Simple_repeat Simple_repeat 2 37 0 191 323 36 66 chr3 189748410 189748577 -28288581 - MIR SINE MIR -56 206 45 321 349 8 0 chr3 189751029 189751155 -28286003 + L2 LINE L2 3187 3313 0 2366 85 3 0 chr3 189751910 189752216 -28284942 - AluSc SINE Alu -2 307 1 399 233 89 48 chr3 189752387 189752533 -28284625 - MIR SINE MIR -105 157 6 2194 134 5 27 chr3 189754442 189754814 -28282344 - THE1B LTR MaLR 0 364 1 11500 94 6 4 chr3 189754814 189756390 -28280768 - THE1B-int LTR MaLR 0 1580 1 2363 121 5 27 chr3 189756390 189756762 -28280396 - THE1B LTR MaLR 0 364 1 218 254 18 0 chr3 189757276 189757331 -28279827 - L2 LINE L2 -2 3311 3256 768 99 0 0 chr3 189758041 189758152 -28279006 + (TAGA)n Simple_repeat Simple_repeat 2 112 0 258 225 62 25 chr3 189758179 189758259 -28278899 - MIR3 SINE MIR -8 200 118 21 0 0 0 chr3 189758350 189758371 -28278787 + AT_rich Low_complexity Low_complexity 1 21 0 225 219 30 134 chr3 189758402 189758448 -28278710 + L2 LINE L2 3167 3216 -97 771 173 24 0 chr3 189758448 189758575 -28278583 - FLAM_A SINE Alu -3 130 1 225 219 30 134 chr3 189758575 189758692 -28278466 + L2 LINE L2 3216 3313 0 216 321 0 0 chr3 189759180 189759233 -28277925 - MIR SINE MIR -121 141 89 36 33 0 16 chr3 189760043 189760081 -28277077 + AT_rich Low_complexity Low_complexity 1 39 -21 1829 138 0 0 chr3 189760081 189760342 -28276816 + AluSx SINE Alu 36 296 -16 36 33 0 16 chr3 189760342 189760364 -28276794 + AT_rich Low_complexity Low_complexity 39 60 0 594 273 91 23 chr3 189760491 189760711 -28276447 + MIR SINE MIR 12 246 -16 211 310 139 8 chr3 189760723 189760852 -28276306 - MIR SINE MIR -68 194 49 323 282 38 15 chr3 189762473 189762604 -28274554 - L1ME4a LINE L1 -13 6108 5975 1575 183 13 35 chr3 189763183 189763500 -28273658 - AluJb SINE Alu -2 310 1 349 199 49 0 chr3 189764437 189764532 -28272626 - MER69 DNA AcHobo -10 2516 2418 2795 10 0 0 chr3 189764536 189764842 -28272316 + AluY SINE Alu 6 311 0 21 0 0 0 chr3 189766669 189766690 -28270468 + AT_rich Low_complexity Low_complexity 1 21 0 337 310 109 17 chr3 189767121 189767295 -28269863 - MIR SINE MIR -26 236 47 260 209 0 60 chr3 189770507 189770574 -28266584 + MIR3 SINE MIR 110 172 -36 589 271 37 43 chr3 189770783 189771248 -28265910 - L1M4 LINE L1 -2880 3266 2805 34 0 0 0 chr3 189772153 189772187 -28264971 + AT_rich Low_complexity Low_complexity 1 34 0 823 112 0 0 chr3 189773411 189773527 -28263631 - AluSp/q SINE Alu -2 311 196 719 284 16 62 chr3 189774112 189774369 -28262789 + MIR SINE MIR 18 262 0 308 319 200 36 chr3 189825204 189825700 -28211458 + MLT1L LTR MaLR 12 588 -27 22 0 0 0 chr3 189825808 189825830 -28211328 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr3 189827166 189827196 -28209962 + AT_rich Low_complexity Low_complexity 1 30 0 1398 194 125 44 chr3 189828607 189828845 -28208313 - MLT1C LTR MaLR 0 467 250 2194 97 0 7 chr3 189828845 189829134 -28208024 - AluSg SINE Alu -23 287 1 1398 194 125 44 chr3 189829134 189829327 -28207831 - MLT1C LTR MaLR -217 250 1 2178 116 0 10 chr3 189829338 189829649 -28207509 - AluSx SINE Alu 0 312 5 2128 127 7 0 chr3 189830259 189830559 -28206599 - AluSg SINE Alu -8 302 1 343 254 16 32 chr3 189830683 189830809 -28206349 + MER103 DNA DNA 8 131 -35 208 316 0 0 chr3 189830955 189831012 -28206146 - MIR3 SINE MIR -48 160 104 447 321 177 30 chr3 189831395 189831762 -28205396 - L2 LINE L2 -61 3252 2832 193 305 25 51 chr3 189831760 189831878 -28205280 + MER5A DNA MER1_type 69 183 -6 * 29 0 0 0 chr3 189832960 189832989 -28204169 + AT_rich Low_complexity Low_complexity 1 29 0 324 280 205 20 chr3 189834073 189834273 -28202885 - MIR SINE MIR -24 238 2 21 36 0 0 chr3 189834577 189834605 -28202553 + AT_rich Low_complexity Low_complexity 1 28 0 660 261 56 14 chr3 189834706 189834993 -28202165 + L1ME4a LINE L1 5617 5915 -206 651 280 164 79 chr3 189835902 189836303 -28200855 + L2 LINE L2 1551 1917 -1397 1803 152 10 40 chr3 189836303 189836606 -28200552 - AluSx SINE Alu -18 294 1 651 280 164 79 chr3 189836606 189836997 -28200161 + L2 LINE L2 1917 2410 -904 886 313 31 45 chr3 189837259 189837748 -28199410 + L2 LINE L2 1996 2477 -837 497 374 55 50 chr3 189837884 189838180 -28198978 + L2 LINE L2 2846 3146 -126 372 43 0 0 chr3 189838180 189838226 -28198932 + (TG)n Simple_repeat Simple_repeat 2 47 0 497 374 55 50 chr3 189838226 189838349 -28198809 + L2 LINE L2 3146 3267 -5 304 354 53 0 chr3 189838758 189838871 -28198287 + MIR SINE MIR 20 138 -70 194 368 46 11 chr3 189838930 189839017 -28198141 + L2 LINE L2 3149 3238 -34 307 236 86 136 chr3 189839325 189839605 -28197553 - L2 LINE L2 -6 3307 3042 261 273 0 15 chr3 189839682 189839748 -28197410 + MIR SINE MIR 81 145 -63 554 224 16 121 chr3 189840776 189840823 -28196335 - MLT1D LTR MaLR 0 505 455 21 36 0 0 chr3 189840823 189840851 -28196307 + AT_rich Low_complexity Low_complexity 1 28 0 2060 130 3 19 chr3 189840857 189841173 -28195985 - AluSq SINE Alu -2 311 1 554 224 16 121 chr3 189841173 189841403 -28195755 - MLT1D LTR MaLR -55 450 317 376 155 0 0 chr3 189841493 189841551 -28195607 - MLT1D LTR MaLR -402 103 46 2111 120 3 3 chr3 189841927 189842226 -28194932 - AluSx SINE Alu -13 299 1 771 253 40 0 chr3 189844365 189844567 -28192591 - MER63A DNA MER1_type 0 210 1 1372 220 46 6 chr3 189845499 189845826 -28191332 + MER58B DNA MER1_type 2 341 0 193 375 10 42 chr3 189846925 189847021 -28190137 - MIR SINE MIR -100 108 16 281 267 104 37 chr3 189848832 189848967 -28188191 - L2 LINE L2 -3 3310 3167 367 292 44 18 chr3 189851489 189851602 -28185556 - MIR SINE MIR -122 140 25 24 0 0 0 chr3 189852052 189852076 -28185082 + AT_rich Low_complexity Low_complexity 1 24 0 866 211 23 0 chr3 189852080 189852276 -28184882 + FAM SINE Alu 1 64 0 2346 89 0 0 chr3 189852957 189853260 -28183898 - AluSx SINE Alu -9 303 1 1128 60 0 0 chr3 189853260 189853394 -28183764 - AluSq/x SINE Alu -178 135 2 256 295 0 26 chr3 189853609 189853687 -28183471 + MER5B DNA MER1_type 2 77 -101 23 0 0 0 chr3 189853868 189853891 -28183267 + AT_rich Low_complexity Low_complexity 1 23 0 2065 109 7 0 chr3 189855029 189855353 -28181805 - AluSp SINE Alu 0 326 1 333 233 217 8 chr3 189855539 189855668 -28181490 - MER5A DNA MER1_type 0 189 34 198 288 113 0 chr3 189856179 189856259 -28180899 + MIR SINE MIR 84 172 -90 185 286 16 16 chr3 189857739 189857802 -28179356 + MIR SINE MIR 79 141 -67 237 224 0 0 chr3 189859855 189859913 -28177245 + (CATA)n Simple_repeat Simple_repeat 3 60 0 21 36 0 0 chr3 189861234 189861262 -28175896 + AT_rich Low_complexity Low_complexity 1 28 0 384 272 44 50 chr3 189861350 189861530 -28175628 + MIR SINE MIR 63 241 -21 183 80 0 0 chr3 189861698 189861723 -28175435 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 23 33 0 0 chr3 189861811 189861841 -28175317 + AT_rich Low_complexity Low_complexity 1 30 0 261 0 0 0 chr3 189863187 189863216 -28173942 + (TG)n Simple_repeat Simple_repeat 2 30 0 373 305 92 0 chr3 189863287 189863451 -28173707 + MIR SINE MIR 71 249 -13 2120 117 13 0 chr3 189863700 189864000 -28173158 + AluSg SINE Alu 1 304 -6 369 0 0 0 chr3 189864006 189864047 -28173111 + (TG)n Simple_repeat Simple_repeat 2 42 0 1808 186 93 73 chr3 189864106 189864601 -28172557 - MLT1D LTR MaLR 0 505 1 451 340 69 30 chr3 189864732 189864964 -28172194 - MIR SINE MIR -14 248 8 22 0 0 0 chr3 189865324 189865346 -28171812 + AT_rich Low_complexity Low_complexity 1 22 0 23 92 0 0 chr3 189866885 189866950 -28170208 + AT_rich Low_complexity Low_complexity 1 65 0 2299 225 76 19 chr3 189868080 189868831 -28168327 + Charlie2 DNA MER1_type 1876 2669 -193 774 206 7 0 chr3 189868832 189868987 -28168171 + AluJb SINE Alu 156 311 -1 363 220 185 6 chr3 189868987 189869160 -28167998 + Charlie2 DNA MER1_type 2658 2861 -1 24 0 0 0 chr3 189870109 189870133 -28167025 + AT_rich Low_complexity Low_complexity 1 24 0 249 146 21 21 chr3 189870155 189870203 -28166955 - L1ME3A LINE L1 -98 6072 6025 27 62 0 0 chr3 189870456 189870504 -28166654 + AT_rich Low_complexity Low_complexity 1 48 0 2212 114 3 3 chr3 189871388 189871695 -28165463 - AluSg SINE Alu -3 307 1 252 170 0 0 chr3 189872059 189872112 -28165046 + (CA)n Simple_repeat Simple_repeat 2 54 0 252 232 116 0 chr3 189872521 189872590 -28164568 - MIR SINE MIR -123 139 63 264 329 18 59 chr3 189872692 189872862 -28164296 + MIR SINE MIR 84 246 -16 185 240 80 20 chr3 189872830 189872880 -28164278 + L2 LINE L2 3219 3271 -1 * 2054 118 17 3 chr3 189873007 189873304 -28163854 - AluSx SINE Alu -11 301 1 2300 99 6 3 chr3 189874026 189874338 -28162820 - AluSp SINE Alu 0 313 1 249 205 115 13 chr3 189875204 189875282 -28161876 + MIR SINE MIR 81 166 -96 1457 272 62 52 chr3 189875470 189876322 -28160836 - L2 LINE L2 -4 3309 2440 380 66 0 33 chr3 189876322 189876383 -28160775 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 1457 272 62 52 chr3 189876383 189876421 -28160737 - L2 LINE L2 -873 2440 2404 22 0 0 0 chr3 189876834 189876856 -28160302 + AT_rich Low_complexity Low_complexity 1 22 0 259 196 10 41 chr3 189878553 189878650 -28158508 + (TAA)n Simple_repeat Simple_repeat 3 96 0 349 303 62 14 chr3 189879277 189879422 -28157736 - MIR SINE MIR -88 174 23 261 333 52 0 chr3 189879566 189879662 -28157496 - MIR SINE MIR -123 139 39 270 0 0 0 chr3 189879919 189879949 -28157209 + (CA)n Simple_repeat Simple_repeat 2 31 0 * 327 25 0 0 chr3 189879948 189879988 -28157170 + (TC)n Simple_repeat Simple_repeat 2 41 0 316 298 154 0 chr3 189882336 189882440 -28154718 - L2 LINE L2 -14 3299 3180 848 271 71 48 chr3 189882470 189882865 -28154293 + MLT1I LTR MaLR 5 408 -1 21 82 0 0 chr3 189883688 189883737 -28153421 + AT_rich Low_complexity Low_complexity 1 49 0 189 0 0 0 chr3 189883816 189883837 -28153321 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 2415 88 0 0 chr3 189884102 189884410 -28152748 - AluSp SINE Alu -5 308 1 202 91 0 45 chr3 189885699 189885743 -28151415 + (TA)n Simple_repeat Simple_repeat 2 43 0 444 37 0 0 chr3 189886131 189886185 -28150973 + (TG)n Simple_repeat Simple_repeat 2 55 0 221 180 20 0 chr3 189886185 189886235 -28150923 + (TA)n Simple_repeat Simple_repeat 1 51 0 1684 181 10 7 chr3 189886967 189887260 -28149898 + AluJb SINE Alu 4 297 -15 342 0 0 0 chr3 189888242 189888280 -28148878 + (TG)n Simple_repeat Simple_repeat 2 39 0 255 282 82 24 chr3 189890136 189890298 -28146860 - L1ME4a LINE L1 -2 6119 5968 204 40 0 0 chr3 189890298 189890323 -28146835 + (TG)n Simple_repeat Simple_repeat 2 26 0 255 282 82 24 chr3 189890323 189890451 -28146707 - L1ME4a LINE L1 -153 5968 5812 383 296 163 25 chr3 189890471 189890839 -28146319 - L1ME4a LINE L1 -2027 5781 5363 1618 107 148 11 chr3 189891043 189891306 -28145852 - AluSg1 SINE Alu -10 299 1 325 238 0 25 chr3 189891356 189891436 -28145722 - MIR SINE MIR 0 262 185 268 303 0 0 chr3 189891450 189891516 -28145642 + MIR SINE MIR 197 262 0 457 375 52 8 chr3 189892077 189892325 -28144833 + MIR SINE MIR 1 259 -3 222 329 19 44 chr3 189892521 189892679 -28144479 - L2 LINE L2 -1692 1622 1469 224 200 117 33 chr3 189892916 189892976 -28144182 + L3 LINE CR1 1501 1565 -12 2989 149 16 2 chr3 189893015 189893505 -28143653 + LOR1a LTR ERV1 1 497 0 1841 102 33 13 chr3 189893881 189894184 -28142974 + L1MA2 LINE L1 5892 6200 -104 526 193 134 75 chr3 189894535 189894774 -28142384 + L1MC4 LINE L1 7790 8042 0 207 69 0 0 chr3 189894814 189894843 -28142315 + (TG)n Simple_repeat Simple_repeat 2 30 0 435 265 172 13 chr3 189896265 189896416 -28140742 - MER5A DNA MER1_type -1 188 14 212 158 18 0 chr3 189897896 189897953 -28139205 + (TA)n Simple_repeat Simple_repeat 2 59 0 22 35 0 0 chr3 189899110 189899139 -28138019 + AT_rich Low_complexity Low_complexity 1 29 0 65 0 0 0 chr3 189899843 189899908 -28137250 + AT_rich Low_complexity Low_complexity 1 65 0 305 69 81 0 chr3 189899908 189899995 -28137163 + (TA)n Simple_repeat Simple_repeat 1 94 0 29 28 0 0 chr3 189899995 189900031 -28137127 + AT_rich Low_complexity Low_complexity 1 36 0 193 88 59 29 chr3 189900048 189900116 -28137042 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 217 202 0 36 chr3 189900133 189900217 -28136941 + (CATATA)n Simple_repeat Simple_repeat 6 86 0 27 0 0 0 chr3 189900643 189900670 -28136488 + AT_rich Low_complexity Low_complexity 1 27 0 744 214 44 31 chr3 189901063 189901222 -28135936 - AluJo SINE Alu -151 161 1 187 256 26 0 chr3 189901763 189901802 -28135356 - L2 LINE L2 -266 3047 3008 381 322 57 28 chr3 189901864 189902075 -28135083 - L2 LINE L2 -431 2883 2667 32 20 0 20 chr3 189902255 189902282 -28134876 + AT_rich Low_complexity Low_complexity 1 28 -21 2060 47 0 0 chr3 189902282 189902537 -28134621 - L1PA5 LINE L1 -8 6146 5892 32 20 0 20 chr3 189902537 189902559 -28134599 + AT_rich Low_complexity Low_complexity 28 49 0 214 261 0 0 chr3 189902630 189902695 -28134463 + (TA)n Simple_repeat Simple_repeat 1 65 0 908 208 117 5 chr3 189904399 189904596 -28132562 + MER20 DNA MER1_type 1 219 0 236 235 12 59 chr3 189905689 189905774 -28131384 + MLT1L LTR MaLR 207 287 -328 251 263 53 13 chr3 189906103 189906179 -28130979 + L2 LINE L2 3193 3271 -1 571 291 74 29 chr3 189907191 189907298 -28129860 + Charlie8 DNA MER1_type 1 102 -239 1585 89 0 9 chr3 189907298 189907512 -28129646 + AluSq SINE Alu 102 313 0 571 291 74 29 chr3 189907512 189907648 -28129510 + Charlie8 DNA MER1_type 102 255 -86 2337 67 0 0 chr3 189908065 189908362 -28128796 + AluSq SINE Alu 1 297 -16 305 277 76 8 chr3 189908462 189908581 -28128577 - MIR SINE MIR -2 260 134 331 214 0 0 chr3 189908630 189908700 -28128458 - L1MA9 LINE L1 -21 6291 6222 659 75 11 0 chr3 189908745 189908839 -28128319 + (GGAA)n Simple_repeat Simple_repeat 2 96 0 23 33 0 0 chr3 189909163 189909193 -28127965 + AT_rich Low_complexity Low_complexity 1 30 0 2133 129 0 0 chr3 189909398 189909700 -28127458 - AluSc SINE Alu -7 302 1 7267 40 16 0 chr3 189909749 189911016 -28126142 + L1PA7 LINE L1 4873 6154 0 21 0 0 0 chr3 189911697 189911718 -28125440 + AT_rich Low_complexity Low_complexity 1 21 0 2413 154 32 0 chr3 189911723 189912125 -28125033 + MSTB LTR MaLR 1 415 -11 253 324 65 0 chr3 189912262 189912370 -28124788 + L2 LINE L2 2863 2977 -336 505 258 61 83 chr3 189912445 189912771 -28124387 + L1ME3A LINE L1 5610 5928 -242 304 266 80 75 chr3 189913083 189913309 -28123849 + L2 LINE L2 3086 3312 -1 751 252 60 30 chr3 189914294 189914528 -28122630 + MIR SINE MIR 12 252 -10 5243 166 35 3 chr3 189914850 189915850 -28121308 + L1MC1 LINE L1 5171 6196 -137 2342 71 0 0 chr3 189916207 189916502 -28120656 + AluY SINE Alu 9 303 -8 392 304 14 55 chr3 189917371 189917541 -28119617 - MIR SINE MIR -61 147 30 1912 151 57 14 chr3 189917721 189918072 -28119086 + MER47A DNA MER2_type 1 366 0 297 0 0 0 chr3 189921006 189921039 -28116119 + (TG)n Simple_repeat Simple_repeat 2 34 0 270 253 40 20 chr3 189922253 189922352 -28114806 + L2 LINE L2 3162 3262 -10 214 246 0 53 chr3 189923390 189923447 -28113711 - MIR SINE MIR -105 157 104 197 311 111 11 chr3 189924295 189924385 -28112773 + L2 LINE L2 3214 3312 -1 2187 94 7 3 chr3 189924541 189924840 -28112318 - AluSq SINE Alu -13 300 1 414 0 0 0 chr3 189925532 189925578 -28111580 + (TG)n Simple_repeat Simple_repeat 2 47 0 21 0 0 0 chr3 189928085 189928106 -28109052 + AT_rich Low_complexity Low_complexity 1 21 0 194 310 17 17 chr3 189928613 189928671 -28108487 - L2 LINE L2 -93 3179 3122 201 39 0 0 chr3 189928722 189928748 -28108410 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 213 256 238 30 chr3 189928838 189929002 -28108156 + MIR SINE MIR 45 242 -20 * 1059 347 90 46 chr3 189928999 189930101 -28107057 + L2 LINE L2 1905 3078 -194 226 206 27 0 chr3 189930159 189930232 -28106926 + (TA)n Simple_repeat Simple_repeat 1 75 0 273 211 0 63 chr3 189930247 189930342 -28106816 + L1MC4 LINE L1 6615 6703 -1339 245 283 0 22 chr3 189930290 189930382 -28106776 - L1MC4 LINE L1 -1339 6703 6614 * 258 206 0 0 chr3 189930387 189930450 -28106708 + (TA)n Simple_repeat Simple_repeat 2 64 0 309 220 167 47 chr3 189930450 189930600 -28106558 + L2 LINE L2 3146 3313 0 1316 196 119 11 chr3 189930667 189931019 -28106139 - MLT1B LTR MaLR 0 390 1 41 21 0 0 chr3 189931989 189932037 -28105121 + AT_rich Low_complexity Low_complexity 1 48 0 181 306 157 19 chr3 189934032 189934140 -28103018 + MIR3 SINE MIR 1 123 -85 2092 108 0 65 chr3 189934404 189934727 -28102431 - AluSg SINE Alu -8 302 1 205 321 49 0 chr3 189934737 189934818 -28102340 - MIR SINE MIR -11 251 167 27 0 0 0 chr3 189935835 189935862 -28101296 + AT_rich Low_complexity Low_complexity 1 27 0 21 57 0 0 chr3 189936803 189936838 -28100320 + AT_rich Low_complexity Low_complexity 1 35 0 2172 58 48 17 chr3 189937303 189937598 -28099560 - AluY SINE Alu -7 304 1 251 326 7 57 chr3 189937822 189937963 -28099195 + MIR SINE MIR 84 217 -45 1927 166 7 0 chr3 189938298 189938605 -28098553 + AluSx SINE Alu 4 312 0 255 254 28 14 chr3 189938673 189938744 -28098414 + (ATGGTG)n Simple_repeat Simple_repeat 5 76 0 352 374 12 30 chr3 189939026 189939192 -28097966 - MIR3 SINE MIR -13 195 33 190 315 67 45 chr3 189939443 189939532 -28097626 - MIR SINE MIR -71 137 47 234 337 96 0 chr3 189939935 189940018 -28097140 + MIR SINE MIR 48 138 -124 430 340 16 11 chr3 189941147 189941338 -28095820 - MIR SINE MIR -3 259 68 26 30 0 0 chr3 189942136 189942169 -28094989 + AT_rich Low_complexity Low_complexity 1 33 0 28 48 0 0 chr3 189943387 189943429 -28093729 + AT_rich Low_complexity Low_complexity 1 42 0 448 279 20 94 chr3 189943464 189943718 -28093440 + MER102b DNA MER1_type 65 299 -42 185 333 32 0 chr3 189944307 189944370 -28092788 - L2 LINE L2 -16 3297 3233 188 86 29 0 chr3 189946009 189946044 -28091114 + (CAGAGA)n Simple_repeat Simple_repeat 2 37 0 247 197 15 76 chr3 189946044 189946110 -28091048 + L1MD1 LINE L1 123 184 -6356 895 156 88 22 chr3 189946114 189946449 -28090709 + MER31A LTR ERV1 1 460 -6 773 193 23 23 chr3 189946450 189946621 -28090537 + L1MD1 LINE L1 182 352 -6188 4312 201 36 26 chr3 189946626 189947816 -28089342 + L1MD1 LINE L1 5361 6567 -69 1282 202 65 10 chr3 189947817 189947880 -28089278 + MLT2B1 LTR ERVL 3 61 -454 315 0 0 0 chr3 189947880 189947915 -28089243 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 342 0 0 0 chr3 189947914 189947952 -28089206 + (TG)n Simple_repeat Simple_repeat 1 38 0 1282 202 65 10 chr3 189947915 189948324 -28088834 + MLT2B1 LTR ERVL 61 510 -5 363 200 0 0 chr3 189948324 189948404 -28088754 + L1MD2 LINE L1 6278 6357 -2 266 385 120 0 chr3 189948744 189948952 -28088206 + MIR SINE MIR 27 259 -3 216 154 0 0 chr3 189949204 189949256 -28087902 + (TA)n Simple_repeat Simple_repeat 2 53 0 1698 147 10 24 chr3 189949377 189949670 -28087488 - AluJb SINE Alu -18 294 6 24 0 0 0 chr3 189951579 189951603 -28085555 + AT_rich Low_complexity Low_complexity 1 24 0 216 368 40 32 chr3 189953181 189953306 -28083852 - L2 LINE L2 -4 3268 3143 1677 188 78 0 chr3 189953377 189953723 -28083435 + MER93b LTR ERV1 1 373 0 323 372 28 37 chr3 189953732 189953950 -28083208 - MIR SINE MIR -31 231 16 263 299 14 83 chr3 189953989 189954133 -28083025 + MER94 DNA DNA 1 134 0 208 316 36 79 chr3 189954296 189954549 -28082609 - L2 LINE L2 -400 2914 2673 21 82 0 0 chr3 189954552 189954601 -28082557 + AT_rich Low_complexity Low_complexity 1 49 0 23 33 0 0 chr3 189954627 189954657 -28082501 + AT_rich Low_complexity Low_complexity 1 30 0 361 281 196 26 chr3 189956172 189956325 -28080833 + MER5A DNA MER1_type 9 187 -2 301 194 67 112 chr3 189958637 189958771 -28078387 - L1MC4 LINE L1 -1304 6738 6611 188 86 29 0 chr3 189958900 189958935 -28078223 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 2178 100 0 0 chr3 189958935 189959215 -28077943 - AluSx SINE Alu -32 280 1 402 238 13 7 chr3 189959256 189959407 -28077751 + (TA)n Simple_repeat Simple_repeat 1 152 0 204 97 0 0 chr3 189959436 189959467 -28077691 + (CA)n Simple_repeat Simple_repeat 2 32 0 21 36 0 0 chr3 189959696 189959724 -28077434 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr3 189960163 189960186 -28076972 + (T)n Simple_repeat Simple_repeat 1 23 0 262 143 0 0 chr3 189960451 189960493 -28076665 + Alu SINE Alu 255 296 -6 * 583 161 0 11 chr3 189960487 189960574 -28076584 + MER30 DNA MER1_type 145 230 0 222 105 0 0 chr3 189962276 189962314 -28074844 + (TAA)n Simple_repeat Simple_repeat 2 39 0 347 284 12 0 chr3 189964048 189964129 -28073029 - MER5A DNA MER1_type -99 90 9 2116 123 0 7 chr3 189964440 189964742 -28072416 - AluSx SINE Alu -10 302 3 459 0 0 0 chr3 189966124 189966175 -28070983 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2298 54 11 0 chr3 189966178 189966458 -28070700 - AluY SINE Alu -28 283 1 22 56 0 0 chr3 189966458 189966494 -28070664 + AT_rich Low_complexity Low_complexity 1 36 0 1895 138 6 18 chr3 189967644 189967971 -28069187 - L1PA13 LINE L1 -6 6157 5835 29 94 0 0 chr3 189968143 189968228 -28068930 + AT_rich Low_complexity Low_complexity 1 85 0 453 275 0 0 chr3 189968590 189968757 -28068401 + (TA)n Simple_repeat Simple_repeat 2 168 0 352 100 0 0 chr3 189969034 189969084 -28068074 - MADE1 DNA Mariner -30 50 1 421 292 14 73 chr3 189971497 189971716 -28065442 - MIR SINE MIR -1 261 56 2193 108 0 20 chr3 189971906 189972212 -28064946 + AluSq SINE Alu 1 300 -13 26 64 0 0 chr3 189972236 189972283 -28064875 + AT_rich Low_complexity Low_complexity 1 47 0 212 204 34 23 chr3 189972319 189972407 -28064751 + (TTATA)n Simple_repeat Simple_repeat 5 93 0 22 35 0 0 chr3 189972551 189972580 -28064578 + AT_rich Low_complexity Low_complexity 1 29 0 1880 183 3 30 chr3 189973017 189973062 -28064096 + MLT1A1 LTR MaLR 8 53 -312 2002 81 106 0 chr3 189973062 189973335 -28063823 + AluSp SINE Alu 1 302 -11 1880 183 3 30 chr3 189973335 189973655 -28063503 + MLT1A1 LTR MaLR 53 363 -2 3878 138 38 39 chr3 189973917 189973975 -28063183 + MER50 LTR ERV1 1 58 -676 315 0 0 0 chr3 189973975 189974010 -28063148 + (CA)n Simple_repeat Simple_repeat 1 35 0 3878 138 38 39 chr3 189974010 189974127 -28063031 + MER50 LTR ERV1 58 174 -560 191 35 0 35 chr3 189974127 189974156 -28063002 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 3878 138 38 39 chr3 189974156 189974691 -28062467 + MER50 LTR ERV1 174 711 -23 5990 98 5 0 chr3 189974883 189975839 -28061319 - L1PA13 LINE L1 -5 6158 5197 229 270 0 110 chr3 189976460 189976560 -28060598 - L3b LINE CR1 -1 1582 1494 2160 111 13 0 chr3 189977079 189977385 -28059773 + AluSg SINE Alu 1 310 0 342 0 0 0 chr3 189978170 189978208 -28058950 + (CA)n Simple_repeat Simple_repeat 2 39 0 * 414 0 0 0 chr3 189978207 189978253 -28058905 + (TC)n Simple_repeat Simple_repeat 2 47 0 258 374 0 50 chr3 189978255 189978394 -28058764 - L2 LINE L2 -183 3089 2958 24 0 0 0 chr3 189978619 189978643 -28058515 + AT_rich Low_complexity Low_complexity 1 24 0 29 47 0 0 chr3 189978745 189978788 -28058370 + AT_rich Low_complexity Low_complexity 1 43 0 1503 150 0 110 chr3 189983196 189983523 -28053635 - AluJb SINE Alu -11 301 11 1665 203 3 3 chr3 189983862 189984158 -28053000 - AluJb SINE Alu -14 298 3 2169 120 0 0 chr3 189984303 189984603 -28052555 + AluSg SINE Alu 1 300 -10 563 313 19 39 chr3 189984873 189985129 -28052029 - MIR SINE MIR -4 258 8 250 293 36 43 chr3 189985469 189985609 -28051549 + L2 LINE L2 2590 2728 -586 24 0 0 0 chr3 189986087 189986111 -28051047 + AT_rich Low_complexity Low_complexity 1 24 0 243 0 0 0 chr3 189988341 189988368 -28048790 + (CA)n Simple_repeat Simple_repeat 2 28 0 * 441 0 0 0 chr3 189988367 189988416 -28048742 + (GA)n Simple_repeat Simple_repeat 2 50 0 830 232 217 69 chr3 189988883 189989351 -28047807 - MLT1E LTR MaLR 0 567 31 186 208 0 0 chr3 189989585 189989638 -28047520 + CT-rich Low_complexity Low_complexity 1 53 0 267 282 117 0 chr3 189989697 189989860 -28047298 - L1MEc LINE L1 -4407 1989 1808 181 237 0 0 chr3 189989995 189990033 -28047125 - MIR SINE MIR 0 262 225 268 235 20 20 chr3 189990258 189990360 -28046798 + (TA)n Simple_repeat Simple_repeat 1 102 0 722 197 0 31 chr3 189990404 189990531 -28046627 - MIR SINE MIR -135 127 5 1781 116 0 4 chr3 189990768 189991026 -28046132 - AluSq SINE Alu -8 305 49 180 0 0 0 chr3 189991032 189991052 -28046106 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 189 211 0 0 chr3 189991196 189991253 -28045905 + CT-rich Low_complexity Low_complexity 1 57 0 1235 300 43 10 chr3 189991301 189991815 -28045343 - L1MEc LINE L1 -4386 2010 1480 28 29 0 0 chr3 189994741 189994776 -28042382 + AT_rich Low_complexity Low_complexity 1 35 0 420 320 103 15 chr3 189995065 189995268 -28041890 + MIR SINE MIR 38 258 -4 198 253 67 53 chr3 189996368 189996443 -28040715 - L2 LINE L2 -9 3263 3188 331 170 50 50 chr3 189997191 189997291 -28039867 - 7SK RNA RNA -93 100 1 570 229 39 33 chr3 189998786 189998939 -28038219 + MIR SINE MIR 89 242 -20 320 235 136 0 chr3 189999125 189999206 -28037952 - MIR SINE MIR -8 254 163 302 303 92 49 chr3 189999894 190000079 -28037079 - L2 LINE L2 -217 3055 2863 222 286 0 26 chr3 190000095 190000172 -28036986 + MER5C DNA MER1_type 50 124 -200 202 333 51 13 chr3 190000716 190000794 -28036364 - L2 LINE L2 -53 3219 3139 212 349 40 47 chr3 190001633 190001782 -28035376 - MIR SINE MIR -74 188 41 25 31 0 0 chr3 190002582 190002614 -28034544 + AT_rich Low_complexity Low_complexity 1 32 0 200 296 0 0 chr3 190003734 190003778 -28033380 + MIR SINE MIR 98 141 -67 200 359 56 20 chr3 190005423 190005621 -28031537 + L2 LINE L2 2555 2759 -555 271 191 0 209 chr3 190006569 190006674 -28030484 - MIR3 SINE MIR -43 165 83 208 267 17 0 chr3 190007278 190007338 -28029820 + (TATG)n Simple_repeat Simple_repeat 4 64 0 233 342 54 36 chr3 190007359 190007470 -28029688 + L2 LINE L2 3139 3251 -21 2062 162 5 41 chr3 190009376 190009765 -28027393 + THE1C LTR MaLR 1 375 0 9975 128 27 20 chr3 190009765 190009868 -28027290 + THE1C-int LTR MaLR 1 102 -1478 2206 124 68 8 chr3 190009868 190010222 -28026936 - THE1C LTR MaLR 0 375 1 9975 128 27 20 chr3 190010222 190011687 -28025471 + THE1C-int LTR MaLR 102 1580 0 2181 121 52 22 chr3 190011687 190012051 -28025107 + THE1C LTR MaLR 1 375 0 479 300 55 55 chr3 190012058 190012315 -28024843 + MIR SINE MIR 6 262 0 2510 226 62 49 chr3 190012436 190012868 -28024290 + L1ME2 LINE L1 4864 5289 -875 1832 137 0 0 chr3 190012868 190013123 -28024035 - AluSx SINE Alu -19 293 39 2510 226 62 49 chr3 190013123 190013939 -28023219 + L1ME2 LINE L1 5289 6159 -5 305 351 44 34 chr3 190013988 190014193 -28022965 + L1MC4 LINE L1 7830 8036 -6 370 211 73 32 chr3 190014289 190014412 -28022746 - L1M4 LINE L1 -900 5246 5119 1637 78 0 17 chr3 190015448 190015680 -28021478 + L1PA8 LINE L1 5944 6171 -1 31 0 0 0 chr3 190015680 190015711 -28021447 + AT_rich Low_complexity Low_complexity 1 31 0 4687 110 4 6 chr3 190017650 190018341 -28018817 + L1PA13 LINE L1 5474 6163 0 198 163 184 0 chr3 190018594 190018643 -28018515 - MER5A DNA MER1_type 0 189 132 25 31 0 0 chr3 190019794 190019826 -28017332 + AT_rich Low_complexity Low_complexity 1 32 0 4679 224 115 16 chr3 190019857 190021891 -28015267 - L1MCb LINE L1 -3882 2863 570 231 211 67 22 chr3 190021897 190021987 -28015171 + L1MC4 LINE L1 6624 6717 -1325 891 262 26 51 chr3 190022058 190022371 -28014787 - L1MCb LINE L1 -5500 545 241 386 203 0 0 chr3 190022404 190022473 -28014685 - MER5A DNA MER1_type -110 79 11 522 248 18 0 chr3 190022491 190022604 -28014554 - MER5B DNA MER1_type 0 178 64 1067 273 95 68 chr3 190022653 190024349 -28012809 - HAL1 LINE L1 -683 1824 3 268 348 84 22 chr3 190024378 190024509 -28012649 + MIR SINE MIR 15 161 -101 2385 83 7 0 chr3 190024509 190024810 -28012348 + AluSq SINE Alu 1 303 -10 268 348 84 22 chr3 190024810 190024856 -28012302 + MIR SINE MIR 161 203 -59 2337 120 25 6 chr3 190024928 190025285 -28011873 - THE1B LTR MaLR 0 364 1 9293 107 97 36 chr3 190025285 190026775 -28010383 - THE1B-int LTR MaLR 0 1580 1 1812 171 23 0 chr3 190026792 190027097 -28010061 - THE1B LTR MaLR -52 312 1 634 207 162 71 chr3 190027160 190027469 -28009689 + MER46C DNA MER2_type 2 338 0 186 143 0 0 chr3 190027831 190027866 -28009292 + (T)n Simple_repeat Simple_repeat 1 35 0 1816 178 10 0 chr3 190028507 190028816 -28008342 + AluJo SINE Alu 1 312 0 284 319 61 58 chr3 190029146 190029459 -28007699 - L1ME LINE L1 -591 5574 5258 191 283 0 0 chr3 190029674 190029727 -28007431 + MIR SINE MIR 95 147 -115 225 0 0 0 chr3 190030766 190030791 -28006367 + (T)n Simple_repeat Simple_repeat 1 25 0 348 309 103 6 chr3 190031589 190031764 -28005394 + MIR SINE MIR 60 251 -11 670 188 25 19 chr3 190031943 190032103 -28005055 - L1ME3A LINE L1 -9 6161 6001 587 113 151 0 chr3 190032262 190032368 -28004790 - L1P4 LINE L1 -693 5472 5351 324 256 12 0 chr3 190033073 190033159 -28003999 - MLT1K LTR MaLR -8 580 494 21 57 0 0 chr3 190034298 190034333 -28002825 + AT_rich Low_complexity Low_complexity 1 35 0 269 289 83 40 chr3 190035224 190035379 -28001779 - L1ME4a LINE L1 -53 6068 5921 1326 152 219 33 chr3 190035379 190035740 -28001418 - MSTC LTR MaLR 0 428 1 269 289 83 40 chr3 190035740 190035979 -28001179 - L1ME4a LINE L1 -200 5921 5657 6848 102 26 26 chr3 190036349 190037416 -27999742 + MER11C LTR ERVK 1 1067 -4 383 93 0 0 chr3 190038227 190038281 -27998877 + MADE1 DNA Mariner 27 80 0 336 337 30 24 chr3 190039142 190039311 -27997847 + MIR3 SINE MIR 38 207 -1 1418 210 55 30 chr3 190039337 190039699 -27997459 + MLT1A2 LTR MaLR 1 371 -3 493 289 47 0 chr3 190040048 190040197 -27996961 - MIR SINE MIR -14 248 93 1604 193 10 13 chr3 190040918 190041223 -27995935 + AluJb SINE Alu 1 304 -8 21 0 0 0 chr3 190041474 190041495 -27995663 + AT_rich Low_complexity Low_complexity 1 21 0 287 239 54 77 chr3 190043042 190043172 -27993986 + L2 LINE L2 3179 3305 -8 375 275 47 74 chr3 190043182 190043331 -27993827 - MIR SINE MIR -71 191 47 633 316 55 17 chr3 190045320 190045557 -27991601 + MIR SINE MIR 14 259 -3 1497 205 37 34 chr3 190045612 190045963 -27991195 + MLT1A2 LTR MaLR 23 374 0 180 77 0 0 chr3 190046029 190046055 -27991103 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 476 273 186 10 chr3 190046598 190046795 -27990363 + MLT1I LTR MaLR 73 304 -105 306 0 0 0 chr3 190046949 190046983 -27990175 + (CA)n Simple_repeat Simple_repeat 2 35 0 1948 122 20 94 chr3 190047600 190047846 -27989312 - MLT1B LTR MaLR 0 390 182 1877 163 3 0 chr3 190047846 190048146 -27989012 - AluSx SINE Alu -11 301 1 1948 122 20 94 chr3 190048146 190048292 -27988866 - MLT1B LTR MaLR -208 182 27 394 306 129 0 chr3 190049026 190049173 -27987985 - MIR SINE MIR -71 191 26 446 296 0 9 chr3 190049486 190049601 -27987557 - L2 LINE L2 -3 3310 3197 659 294 115 48 chr3 190050427 190050889 -27986269 + L3 LINE CR1 644 1136 -441 218 358 12 0 chr3 190050895 190050976 -27986182 + L3 LINE CR1 1495 1576 -1 328 260 0 0 chr3 190051506 190051579 -27985579 - MER5A DNA MER1_type -107 82 10 234 194 28 97 chr3 190052335 190052407 -27984751 - MER5B DNA MER1_type 0 178 112 2101 113 0 7 chr3 190052507 190052800 -27984358 + AluSx SINE Alu 3 293 -19 21 0 0 0 chr3 190052861 190052882 -27984276 + AT_rich Low_complexity Low_complexity 1 21 0 270 200 91 0 chr3 190053081 190053136 -27984022 - MER20 DNA MER1_type -159 60 1 341 236 100 57 chr3 190053176 190053316 -27983842 - MIR SINE MIR -7 255 110 202 264 0 19 chr3 190053474 190053527 -27983631 + L2 LINE L2 3262 3313 0 21 57 0 0 chr3 190054310 190054345 -27982813 + AT_rich Low_complexity Low_complexity 1 35 0 460 290 60 32 chr3 190055088 190055305 -27981853 - MARNA DNA Mariner -214 372 150 203 400 7 20 chr3 190056704 190056854 -27980304 + MIR SINE MIR 16 163 -99 439 220 20 0 chr3 190057233 190057333 -27979825 + MIR SINE MIR 84 185 -77 22 0 0 0 chr3 190057727 190057749 -27979409 + AT_rich Low_complexity Low_complexity 1 22 0 290 272 154 0 chr3 190057823 190057959 -27979199 + MER112 DNA MER1_type 98 254 -6 722 206 21 21 chr3 190058436 190058625 -27978533 + MER5A DNA MER1_type 1 189 0 1723 185 3 10 chr3 190058947 190059300 -27977858 + AluJo SINE Alu 1 351 0 243 0 0 0 chr3 190060440 190060467 -27976691 + (T)n Simple_repeat Simple_repeat 1 27 0 1576 158 49 0 chr3 190060539 190060804 -27976354 + AluJb SINE Alu 2 279 -33 233 274 0 10 chr3 190060984 190061086 -27976072 + (CATATA)n Simple_repeat Simple_repeat 5 105 0 233 130 14 43 chr3 190061112 190061181 -27975977 + (TA)n Simple_repeat Simple_repeat 2 68 0 497 30 15 0 chr3 190061237 190061304 -27975854 + (TCTA)n Simple_repeat Simple_repeat 4 71 0 423 240 113 44 chr3 190062605 190062809 -27974349 - MER112 DNA MER1_type -41 219 2 1795 90 7 54 chr3 190062841 190063118 -27974040 + AluSx SINE Alu 37 300 -12 926 217 10 0 chr3 190063290 190063497 -27973661 - MER3 DNA MER1_type 0 209 1 1726 169 39 3 chr3 190063706 190064038 -27973120 + L1MC1 LINE L1 5988 6331 -2 324 319 200 36 chr3 190064816 190065312 -27971846 + MLT1L LTR MaLR 12 588 -27 22 0 0 0 chr3 190065420 190065442 -27971716 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr3 190066778 190066808 -27970350 + AT_rich Low_complexity Low_complexity 1 30 0 207 69 0 0 chr3 190068544 190068573 -27968585 + (CA)n Simple_repeat Simple_repeat 2 30 0 526 193 134 75 chr3 190068613 190068852 -27968306 - L1MC4 LINE L1 0 8042 7790 1841 102 33 13 chr3 190069203 190069506 -27967652 - L1MA2 LINE L1 -104 6200 5892 2989 149 16 2 chr3 190069882 190070372 -27966786 - LOR1a LTR ERV1 0 497 1 465 314 216 41 chr3 190070411 190071051 -27966107 - L3 LINE CR1 -12 1565 814 12254 203 52 30 chr3 190071886 190078684 -27958474 - L1PA16 LINE L1 -5 6864 1 1507 133 20 0 chr3 190080636 190080891 -27956267 - L1MA2 LINE L1 -29 6275 6016 7462 200 26 113 chr3 190080891 190082147 -27955011 - L1 LINE L1 -1113 5033 3670 297 51 0 0 chr3 190082147 190082186 -27954972 + (TG)n Simple_repeat Simple_repeat 2 40 0 7462 200 26 113 chr3 190082186 190083997 -27953161 - L1 LINE L1 -2476 3670 2232 281 205 13 26 chr3 190084166 190084244 -27952914 - MIR SINE MIR -102 160 84 270 0 0 0 chr3 190085026 190085056 -27952102 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 462 327 27 0 chr3 190086380 190086530 -27950628 + MIR SINE MIR 2 155 -107 211 307 13 105 chr3 190087280 190087433 -27949725 - MIR SINE MIR -75 187 49 207 375 80 27 chr3 190089158 190089270 -27947888 - L2 LINE L2 -21 3251 3134 183 287 194 37 chr3 190089950 190090058 -27947100 + L2 LINE L2 3182 3306 -7 1798 139 3 64 chr3 190090101 190090233 -27946925 + AluJb SINE Alu 1 139 -173 261 0 0 0 chr3 190090233 190090262 -27946896 + (CA)n Simple_repeat Simple_repeat 2 30 0 1798 139 3 64 chr3 190090262 190090459 -27946699 + AluJb SINE Alu 139 310 -2 325 339 43 38 chr3 190090535 190090721 -27946437 + L2 LINE L2 2459 2645 -669 506 219 0 0 chr3 190090982 190091078 -27946080 - MER5A DNA MER1_type -85 104 9 187 310 71 25 chr3 190091518 190091715 -27945443 + L2 LINE L2 2868 3073 -199 873 205 51 10 chr3 190093766 190093961 -27943197 + MER3 DNA MER1_type 1 203 -6 229 303 192 20 chr3 190093972 190094071 -27943087 + L2 LINE L2 3154 3269 -3 284 306 112 0 chr3 190094384 190094482 -27942676 + L2 LINE L2 3148 3256 -16 219 213 43 0 chr3 190095197 190095244 -27941914 - MIR SINE MIR -11 251 203 350 279 57 32 chr3 190095337 190095349 -27941809 + MIR SINE MIR 8 18 -190 1102 219 83 22 chr3 190095349 190095673 -27941485 + MER2 DNA MER2_type 1 344 0 350 279 57 32 chr3 190095673 190095794 -27941364 + MIR SINE MIR 18 144 -64 238 278 60 90 chr3 190096115 190096248 -27940910 - L2 LINE L2 0 3313 3185 384 281 61 0 chr3 190096324 190096438 -27940720 + L2 LINE L2 3152 3272 0 544 352 4 20 chr3 190096849 190097102 -27940056 - MIR SINE MIR -12 250 2 387 286 74 40 chr3 190097180 190097355 -27939803 - MIR SINE MIR -71 191 11 37 23 0 0 chr3 190098892 190098936 -27938222 + AT_rich Low_complexity Low_complexity 1 44 0 210 71 0 0 chr3 190099449 190099477 -27937681 + (TG)n Simple_repeat Simple_repeat 2 29 0 288 70 0 0 chr3 190100238 190100281 -27936877 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 23 54 0 0 chr3 190102149 190102186 -27934972 + AT_rich Low_complexity Low_complexity 1 37 0 29 0 0 0 chr3 190102358 190102387 -27934771 + AT_rich Low_complexity Low_complexity 1 29 0 2167 100 27 0 chr3 190102631 190102932 -27934226 + AluSc SINE Alu 1 309 0 2415 87 3 0 chr3 190103303 190103615 -27933543 - AluSp SINE Alu 0 313 1 180 151 0 132 chr3 190104595 190104648 -27932510 - L2 LINE L2 -3 3310 3265 472 289 204 9 chr3 190105241 190105452 -27931706 - MIR SINE MIR 0 262 11 316 256 66 8 chr3 190105682 190105803 -27931355 - LTR67 LTR ERVL -26 531 404 249 33 0 0 chr3 190106206 190106236 -27930922 + (TG)n Simple_repeat Simple_repeat 2 31 0 376 258 157 14 chr3 190106287 190106504 -27930654 - L1ME4a LINE L1 -1 6120 5873 403 287 74 0 chr3 190106712 190106834 -27930324 - MIR SINE MIR -121 141 11 513 301 104 3 chr3 190106837 190107163 -27929995 - L1ME4a LINE L1 -393 5728 5370 2276 96 7 0 chr3 190107296 190107598 -27929560 - AluSx SINE Alu -5 307 4 439 291 75 0 chr3 190107698 190107832 -27929326 + MIR SINE MIR 118 261 -1 289 278 32 107 chr3 190108205 190108392 -27928766 - MIR SINE MIR -12 250 78 442 311 141 10 chr3 190108538 190108744 -27928414 + MIR SINE MIR 26 258 -4 212 395 48 36 chr3 190108880 190109047 -27928111 - L2 LINE L2 -2 3270 3102 1673 181 0 20 chr3 190109413 190109705 -27927453 + AluJb SINE Alu 5 290 -22 584 128 19 39 chr3 190109718 190109874 -27927284 + GA-rich Low_complexity Low_complexity 4 156 0 286 305 0 43 chr3 190110359 190110523 -27926635 + T-rich Low_complexity Low_complexity 3 159 0 339 85 0 0 chr3 190111431 190111478 -27925680 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 29 60 0 0 chr3 190113532 190113582 -27923576 + AT_rich Low_complexity Low_complexity 1 50 0 22 70 0 0 chr3 190113866 190113909 -27923249 + AT_rich Low_complexity Low_complexity 1 43 0 264 217 14 29 chr3 190114318 190114387 -27922771 + MIR SINE MIR 161 228 -34 238 323 0 0 chr3 190115807 190115872 -27921286 + L2 LINE L2 3246 3310 -3 1843 169 7 7 chr3 190117370 190117678 -27919480 - AluJb SINE Alu -4 308 1 2361 93 0 3 chr3 190118074 190118385 -27918773 - AluSg SINE Alu 0 310 1 681 318 60 48 chr3 190118391 190118875 -27918283 + L2 LINE L2 2824 3313 0 848 128 61 72 chr3 190119193 190119373 -27917785 + MER7A DNA MER2_type 1 176 -170 1517 90 54 0 chr3 190119375 190119598 -27917560 - LTR12 LTR ERV1 0 714 480 345 233 29 19 chr3 190119599 190119702 -27917456 - LTR30 LTR ERV1 -80 642 539 6076 143 62 71 chr3 190119702 190120991 -27916167 - pTR5 LTR ERV1 -418 2020 743 649 180 0 0 chr3 190120992 190121092 -27916066 + MER7A DNA MER2_type 232 331 -15 1625 240 50 44 chr3 190121110 190121610 -27915548 - MLT1D LTR MaLR -2 503 1 907 222 54 53 chr3 190121761 190122190 -27914968 - LTR37B LTR ERV1 0 468 6 21 0 0 0 chr3 190122376 190122397 -27914761 + AT_rich Low_complexity Low_complexity 1 21 0 239 226 184 54 chr3 190123138 190123306 -27913852 - MLT1J LTR MaLR -33 478 289 246 229 0 0 chr3 190123423 190123471 -27913687 - MLT1J LTR MaLR -463 48 1 23 0 0 0 chr3 190123472 190123495 -27913663 + AT_rich Low_complexity Low_complexity 1 23 0 184 362 153 6 chr3 190123499 190123676 -27913482 + MIR3 SINE MIR 1 203 -5 278 303 66 25 chr3 190124425 190124547 -27912611 - MIR3 SINE MIR -52 156 30 251 277 24 12 chr3 190124861 190124944 -27912214 - L2 LINE L2 -1 3312 3229 223 363 0 0 chr3 190124968 190125059 -27912099 - L2 LINE L2 -864 2450 2360 1224 266 57 25 chr3 190125410 190125812 -27911346 - MLT1C LTR MaLR 0 467 53 1261 209 28 59 chr3 190125813 190126171 -27910987 - MLT1A1 LTR MaLR 0 365 19 396 296 94 0 chr3 190127695 190127854 -27909304 + MIR SINE MIR 8 181 -81 311 318 84 39 chr3 190127855 190128034 -27909124 + MER5A DNA MER1_type 1 187 -2 347 228 98 49 chr3 190128091 190128214 -27908944 + L2 LINE L2 3141 3269 -3 22 0 0 0 chr3 190128846 190128868 -27908290 + AT_rich Low_complexity Low_complexity 1 22 0 1201 234 80 58 chr3 190130085 190130533 -27906625 - MLT1C LTR MaLR -2 465 8 197 335 145 30 chr3 190132261 190132461 -27904697 + L2 LINE L2 2339 2561 -753 2179 112 0 0 chr3 190132871 190133167 -27903991 + AluSx SINE Alu 1 296 -16 233 365 95 0 chr3 190133326 190133452 -27903706 - MIR3 SINE MIR -48 160 23 2504 47 0 0 chr3 190133904 190134200 -27902958 + AluY SINE Alu 1 296 -15 21 0 0 0 chr3 190134241 190134262 -27902896 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr3 190135184 190135220 -27901938 + AT_rich Low_complexity Low_complexity 1 36 0 277 228 109 43 chr3 190135814 190135906 -27901252 - MIR SINE MIR -116 146 49 369 357 47 0 chr3 190136057 190136186 -27900972 - MIR3 SINE MIR -31 177 43 21 0 0 0 chr3 190137312 190137333 -27899825 + AT_rich Low_complexity Low_complexity 1 21 0 652 355 9 0 chr3 190137447 190137658 -27899500 + MIR SINE MIR 6 218 -44 382 234 55 62 chr3 190137686 190137814 -27899344 + MIR SINE MIR 20 146 -116 236 204 19 0 chr3 190137950 190138004 -27899154 + (ATTTG)n Simple_repeat Simple_repeat 5 59 0 517 209 0 52 chr3 190139100 190139215 -27897943 + FLAM_A SINE Alu 1 109 -33 29 47 0 0 chr3 190139227 190139270 -27897888 + AT_rich Low_complexity Low_complexity 1 43 0 1428 122 8 49 chr3 190139382 190139629 -27897529 - LTR8 LTR ERV1 -439 252 16 2526 153 12 0 chr3 190139640 190140059 -27897099 - MER57B LTR ERV1 -3 431 8 264 246 0 16 chr3 190140410 190140471 -27896687 - LTR47B LTR ERVL 0 443 384 2650 83 95 5 chr3 190140482 190140893 -27896265 - LTR7 LTR ERV1 -2 448 1 1716 169 114 100 chr3 190140907 190141468 -27895690 - LTR49 LTR ERV1 -26 569 1 1396 208 41 46 chr3 190141468 190141656 -27895502 - LTR47B LTR ERVL -56 387 200 2103 88 7 24 chr3 190141656 190141985 -27895173 + AluSp SINE Alu 2 313 0 1396 208 41 46 chr3 190141985 190142185 -27894973 - LTR47B LTR ERVL -243 200 1 4094 159 16 19 chr3 190142514 190143212 -27893946 - MER50 LTR ERV1 -30 704 9 270 0 0 0 chr3 190143440 190143470 -27893688 + (T)n Simple_repeat Simple_repeat 1 30 0 558 255 47 42 chr3 190144329 190144541 -27892617 + L2 LINE L2 3084 3296 -17 400 279 83 106 chr3 190144577 190145219 -27891939 - L1M4 LINE L1 -3379 2767 2141 352 243 125 14 chr3 190145413 190145557 -27891601 - L2 LINE L2 -4 3309 3150 331 342 57 54 chr3 190145835 190146017 -27891141 - HAL1b LINE L1 -653 695 510 1905 157 10 0 chr3 190146017 190146311 -27890847 - AluSx SINE Alu -15 297 1 331 342 57 54 chr3 190146311 190146464 -27890694 - HAL1b LINE L1 -838 510 359 2099 123 3 0 chr3 190146812 190147114 -27890044 - AluSc SINE Alu -6 303 1 2159 120 13 0 chr3 190147514 190147823 -27889335 - AluSq SINE Alu 0 313 1 391 321 79 81 chr3 190148704 190149149 -27888009 + HAL1b LINE L1 70 513 -835 184 360 0 0 chr3 190150005 190150055 -27887103 - L2 LINE L2 -77 3195 3146 2543 33 0 16 chr3 190150105 190150412 -27886746 - AluY SINE Alu -9 302 1 382 272 35 26 chr3 190150505 190150685 -27886473 + MIR SINE MIR 8 236 -26 389 138 15 0 chr3 190150687 190150752 -27886406 + MER1A DNA MER1_type 1 66 -461 815 80 18 0 chr3 190150752 190150865 -27886293 + AluSg/x SINE Alu 188 302 -10 2988 154 22 0 chr3 190150866 190151328 -27885830 + MER1A DNA MER1_type 58 529 0 282 329 128 7 chr3 190152257 190152406 -27884752 - MIR SINE MIR -59 203 37 182 283 0 0 chr3 190154426 190154472 -27882686 - L2 LINE L2 -5 3308 3263 1677 188 4 0 chr3 190154892 190155164 -27881994 - AluJo SINE Alu -30 282 10 193 231 96 0 chr3 190156839 190156891 -27880267 - L2 LINE L2 -2 3311 3255 2069 130 0 3 chr3 190156932 190157233 -27879925 + AluSx SINE Alu 1 300 -12 269 297 11 11 chr3 190158641 190158732 -27878426 + MIR SINE MIR 168 258 -4 286 289 79 0 chr3 190159829 190159905 -27877253 - MER91B DNA MER1_type -2 188 107 278 261 92 17 chr3 190160319 190160438 -27876720 + L3b LINE CR1 1277 1404 -179 479 282 141 7 chr3 190160971 190161120 -27876038 + MIR3 SINE MIR 25 193 -15 340 184 19 136 chr3 190161160 190161263 -27875895 - MER5A DNA MER1_type -5 184 94 235 316 63 11 chr3 190161330 190161425 -27875733 + L2 LINE L2 3168 3267 -5 225 0 0 0 chr3 190162761 190162786 -27874372 + (T)n Simple_repeat Simple_repeat 1 25 0 205 284 60 15 chr3 190163422 190163489 -27873669 - L2 LINE L2 -13 3259 3190 2102 68 0 4 chr3 190163646 190163911 -27873247 + AluY SINE Alu 39 302 -9 1739 197 0 0 chr3 190164068 190164413 -27872745 - AluJb SINE Alu 0 312 1 25 0 0 0 chr3 190164424 190164449 -27872709 + AT_rich Low_complexity Low_complexity 1 25 0 186 103 0 0 chr3 190164991 190165020 -27872138 + (TG)n Simple_repeat Simple_repeat 1 29 0 4225 119 14 2 chr3 190165199 190166104 -27871054 + L1PA11 LINE L1 4975 5887 -287 379 91 0 0 chr3 190166135 190166190 -27870968 - MLT2A1 LTR ERVL 0 444 390 549 0 0 0 chr3 190166265 190166328 -27870830 + MLT2A1 LTR ERVL 1 63 -381 31 107 0 0 chr3 190166356 190166478 -27870680 + AT_rich Low_complexity Low_complexity 1 122 0 2223 217 129 14 chr3 190166582 190167273 -27869885 + L1MC4 LINE L1 6885 7654 -388 258 269 30 0 chr3 190167286 190167353 -27869805 + GA-rich Low_complexity Low_complexity 5 73 0 201 154 0 0 chr3 190167821 190167860 -27869298 + CT-rich Low_complexity Low_complexity 1 39 0 42419 32 23 1 chr3 190168140 190174149 -27863009 - L1PA2 LINE L1 -2 6153 13 321 26 0 0 chr3 190174218 190174256 -27862902 + (TA)n Simple_repeat Simple_repeat 1 38 0 316 323 21 0 chr3 190174324 190174420 -27862738 - L1MC4 LINE L1 -1331 6711 6614 * 324 283 0 22 chr3 190174352 190174444 -27862714 + L1MC4 LINE L1 6614 6703 -1339 180 176 0 0 chr3 190174468 190174502 -27862656 + (TA)n Simple_repeat Simple_repeat 2 35 0 4078 150 12 3 chr3 190174504 190175182 -27861976 - L1PA15 LINE L1 0 6165 5482 26 74 0 0 chr3 190175260 190175314 -27861844 + AT_rich Low_complexity Low_complexity 1 54 0 241 337 82 0 chr3 190175466 190175564 -27861594 - MIR SINE MIR -65 197 92 1065 161 22 6 chr3 190175582 190175762 -27861396 - MSTB1 LTR MaLR 0 432 250 740 173 0 0 chr3 190175769 190175896 -27861262 - MSTB1 LTR MaLR -302 130 4 4249 174 50 30 chr3 190177612 190178912 -27858246 - L1MB2 LINE L1 0 6171 4839 631 62 31 0 chr3 190181101 190181197 -27855961 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 24 0 0 0 chr3 190185979 190186003 -27851155 + AT_rich Low_complexity Low_complexity 1 24 0 27 73 0 0 chr3 190186358 190186413 -27850745 + AT_rich Low_complexity Low_complexity 1 55 0 25 75 0 0 chr3 190188126 190188179 -27848979 + AT_rich Low_complexity Low_complexity 1 53 0 296 247 71 88 chr3 190188388 190188570 -27848588 - MIR SINE MIR -33 229 51 26 0 0 0 chr3 190190076 190190102 -27847056 + AT_rich Low_complexity Low_complexity 1 26 0 216 182 0 0 chr3 190191578 190191622 -27845536 + A-rich Low_complexity Low_complexity 1 44 0 25 51 0 0 chr3 190193374 190193413 -27843745 + AT_rich Low_complexity Low_complexity 1 39 0 264 317 0 12 chr3 190195322 190195404 -27841754 + GA-rich Low_complexity Low_complexity 5 85 0 755 356 130 17 chr3 190196998 190197582 -27839576 - L3 LINE CR1 -314 1263 614 195 357 12 0 chr3 190197745 190197829 -27839329 - L2 LINE L2 0 3313 3229 663 103 0 0 chr3 190198352 190198449 -27838709 + (TA)n Simple_repeat Simple_repeat 1 97 0 373 298 132 12 chr3 190198535 190198777 -27838381 + L1M4 LINE L1 4566 4836 -1310 232 294 99 48 chr3 190198849 190199182 -27837976 + L1M4 LINE L1 4958 5307 -839 324 376 47 7 chr3 190199199 190199348 -27837810 + HAL1 LINE L1 6 160 -2347 30 27 0 0 chr3 190199466 190199503 -27837655 + AT_rich Low_complexity Low_complexity 1 37 0 282 295 116 58 chr3 190199863 190200381 -27836777 + HAL1b LINE L1 284 831 -517 1467 246 75 79 chr3 190200652 190201535 -27835623 + L1MC5 LINE L1 6643 7521 -440 343 354 23 29 chr3 190201637 190201812 -27835346 + L1ME3A LINE L1 5988 6161 -9 472 291 47 7 chr3 190201834 190202107 -27835051 + HAL1 LINE L1 1288 1607 -900 420 299 115 38 chr3 190202145 190202406 -27834752 + HAL1 LINE L1 1811 2091 -416 422 288 70 14 chr3 190202479 190202800 -27834358 - L1ME LINE L1 -517 5604 5269 199 276 35 35 chr3 190205292 190205379 -27831779 + L2 LINE L2 2553 2639 -675 220 354 82 77 chr3 190205402 190205803 -27831355 + L2 LINE L2 2828 3230 -42 1447 205 10 36 chr3 190206934 190207241 -27829917 + AluJo SINE Alu 3 301 -11 264 328 8 50 chr3 190207586 190207655 -27829503 + L2 LINE L2 3158 3221 -51 2176 194 41 49 chr3 190207655 190207937 -27829221 + MLT1D LTR MaLR 1 279 -226 2208 107 0 7 chr3 190207937 190208235 -27828923 + AluSg SINE Alu 1 296 -14 2176 194 41 49 chr3 190208235 190208461 -27828697 + MLT1D LTR MaLR 279 505 0 264 328 8 50 chr3 190208461 190208510 -27828648 + L2 LINE L2 3221 3271 -1 201 121 0 0 chr3 190208661 190208694 -27828464 + (GA)n Simple_repeat Simple_repeat 2 34 0 184 330 34 51 chr3 190209006 190209124 -27828034 - L2 LINE L2 -557 2757 2642 219 238 0 0 chr3 190209154 190209196 -27827962 - MIR SINE MIR -65 197 156 2791 19 0 0 chr3 190209397 190209708 -27827450 + AluYa5 SINE Alu 1 311 0 22 0 0 0 chr3 190209790 190209812 -27827346 + AT_rich Low_complexity Low_complexity 1 22 0 341 284 248 7 chr3 190210522 190210663 -27826495 + MER5A DNA MER1_type 9 183 -6 21 0 0 0 chr3 190211288 190211309 -27825849 + AT_rich Low_complexity Low_complexity 1 21 0 243 208 0 0 chr3 190211755 190211803 -27825355 + MIR SINE MIR 87 134 -74 208 333 97 11 chr3 190211957 190212050 -27825108 + MIR SINE MIR 35 135 -73 690 119 9 18 chr3 190212117 190212226 -27824932 + THE1C LTR MaLR 1 108 -267 927 127 24 42 chr3 190212231 190212397 -27824761 + THE1C LTR MaLR 213 375 0 387 319 53 13 chr3 190212402 190212589 -27824569 - MIR SINE MIR -55 207 15 200 300 62 0 chr3 190212718 190212798 -27824360 - MIR SINE MIR -11 251 167 27 0 0 0 chr3 190213815 190213842 -27823316 + AT_rich Low_complexity Low_complexity 1 27 0 1930 97 47 27 chr3 190215278 190215576 -27821582 - AluY SINE Alu -7 304 1 454 302 212 13 chr3 190215576 190215967 -27821191 + L2 LINE L2 1942 2410 -904 886 313 31 45 chr3 190216230 190216719 -27820439 + L2 LINE L2 1996 2477 -837 511 379 55 50 chr3 190216855 190217151 -27820007 + L2 LINE L2 2846 3146 -126 372 43 0 0 chr3 190217151 190217197 -27819961 + (TG)n Simple_repeat Simple_repeat 2 47 0 511 379 55 50 chr3 190217197 190217320 -27819838 + L2 LINE L2 3146 3267 -5 304 354 53 0 chr3 190217730 190217843 -27819315 + MIR SINE MIR 20 138 -70 194 368 46 11 chr3 190217902 190217989 -27819169 + L2 LINE L2 3149 3238 -34 307 236 86 136 chr3 190218297 190218577 -27818581 - L2 LINE L2 -6 3307 3042 261 273 0 15 chr3 190218654 190218720 -27818438 + MIR SINE MIR 81 145 -63 199 293 114 57 chr3 190219758 190219881 -27817277 + L2 LINE L2 3184 3313 0 627 274 49 49 chr3 190221083 190221328 -27815830 - MIR SINE MIR 0 262 18 970 201 5 11 chr3 190221328 190221517 -27815641 - MER5A DNA MER1_type 0 189 2 454 250 102 0 chr3 190223525 190223653 -27813505 - MIR SINE MIR -121 141 1 24 32 0 0 chr3 190225162 190225193 -27811965 + AT_rich Low_complexity Low_complexity 1 31 0 2301 119 0 6 chr3 190225289 190225601 -27811557 + AluSx SINE Alu 1 310 -2 23 33 0 0 chr3 190228360 190228390 -27808768 + AT_rich Low_complexity Low_complexity 1 30 0 1719 158 0 7 chr3 190228681 190228983 -27808175 + AluSg SINE Alu 11 310 0 298 354 63 23 chr3 190229794 190229969 -27807189 + MIR3 SINE MIR 18 199 -9 406 305 51 25 chr3 190230630 190230827 -27806331 + L2 LINE L2 2090 2291 -1023 220 313 141 8 chr3 190231102 190231230 -27805928 + MIR SINE MIR 118 262 0 396 295 94 7 chr3 190233583 190233732 -27803426 + MIR SINE MIR 47 208 -54 210 281 18 0 chr3 190234222 190234279 -27802879 - L2 LINE L2 -4 3268 3211 243 103 0 0 chr3 190236131 190236170 -27800988 + (CA)n Simple_repeat Simple_repeat 2 40 0 358 306 116 43 chr3 190237751 190238052 -27799106 + L1M4 LINE L1 3604 3926 -2220 381 268 84 28 chr3 190238064 190238206 -27798952 - MLT1J LTR MaLR -61 450 301 8289 178 114 10 chr3 190238227 190239817 -27797341 + MER52A LTR ERV1 1 1755 0 297 198 267 0 chr3 190239995 190240081 -27797077 - MLT1J LTR MaLR -389 122 14 289 208 28 14 chr3 190240919 190240991 -27796167 + MER52A LTR ERV1 654 726 -1029 244 268 0 18 chr3 190241128 190241184 -27795974 + polypurine Low_complexity Low_complexity 3 57 0 318 298 48 19 chr3 190241297 190241401 -27795757 + MIR3 SINE MIR 49 155 -53 1195 251 15 29 chr3 190242269 190242611 -27794547 + MER58B DNA MER1_type 3 339 -2 2344 101 0 0 chr3 190242780 190243086 -27794072 + AluSg SINE Alu 1 306 -4 2073 121 0 0 chr3 190243374 190243683 -27793475 + AluSx SINE Alu 1 309 0 2001 124 17 3 chr3 190243718 190244008 -27793150 - AluSx SINE Alu -16 296 3 343 61 20 0 chr3 190244101 190244150 -27793008 - MADE1 DNA Mariner -29 51 2 192 77 0 0 chr3 190245134 190245160 -27791998 + (TAA)n Simple_repeat Simple_repeat 2 27 0 388 262 16 49 chr3 190245596 190245694 -27791464 + MER94 DNA DNA 3 99 -35 1697 151 44 4 chr3 190245694 190246019 -27791139 + AluJo SINE Alu 1 336 0 388 262 16 49 chr3 190246019 190246041 -27791117 + MER94 DNA DNA 99 120 -14 2253 103 0 7 chr3 190246458 190246759 -27790399 + AluSq SINE Alu 1 299 -14 765 318 143 18 chr3 190246984 190247430 -27789728 - MLT1K LTR MaLR -2 586 85 329 217 17 0 chr3 190247853 190247913 -27789245 - AluJ/FLAM SINE Alu -241 61 1 2893 81 2 48 chr3 190248096 190248515 -27788643 + MLT2A1 LTR ERVL 1 400 -44 4911 74 11 0 chr3 190248515 190249138 -27788020 + HERVL LTR ERVL 2613 3242 -2412 4530 70 18 2 chr3 190249133 190249733 -27787425 + HERVL LTR ERVL 5043 5652 -2 * 228 324 52 15 chr3 190250043 190250179 -27786979 - HAL1 LINE L1 -2363 144 4 312 377 85 11 chr3 190250191 190250472 -27786686 - L2 LINE L2 -609 2705 2404 1759 163 0 36 chr3 190251443 190251749 -27785409 + AluJo SINE Alu 1 295 -17 23 33 0 0 chr3 190251989 190252019 -27785139 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr3 190253168 190253196 -27783962 + AT_rich Low_complexity Low_complexity 1 28 0 235 293 0 0 chr3 190253558 190253616 -27783542 + MIR3 SINE MIR 122 179 -29 535 205 181 97 chr3 190253629 190253707 -27783451 + MER34C LTR ERV1 47 117 -468 2206 176 15 2 chr3 190253707 190254105 -27783053 + MER57A LTR ERV1 1 403 0 535 205 181 97 chr3 190254105 190254523 -27782635 + MER34C LTR ERV1 117 585 0 3106 141 79 0 chr3 190254646 190255151 -27782007 - MER34C LTR ERV1 -6 579 35 21 36 0 0 chr3 190255397 190255425 -27781733 + AT_rich Low_complexity Low_complexity 1 28 0 424 241 103 0 chr3 190255943 190256059 -27781099 + MIR SINE MIR 61 188 -74 1274 236 76 35 chr3 190256300 190256694 -27780464 - L1ME1 LINE L1 -51 6184 5775 701 251 6 6 chr3 190257198 190257361 -27779797 - MLT1I LTR MaLR -245 164 2 410 342 31 19 chr3 190257386 190257643 -27779515 - L1ME1 LINE L1 -1214 5001 4742 1862 197 8 35 chr3 190257863 190258071 -27779087 - MLT1A1 LTR MaLR 0 365 170 2194 122 73 14 chr3 190258071 190258415 -27778743 - THE1B LTR MaLR 0 364 1 1862 197 8 35 chr3 190258415 190258581 -27778577 - MLT1A1 LTR MaLR -195 170 1 1995 262 80 17 chr3 190258628 190259883 -27777275 - L1ME1 LINE L1 -3307 2908 1593 2542 160 27 5 chr3 190259972 190260385 -27776773 - MSTA LTR MaLR -2 426 5 9160 175 24 7 chr3 190260390 190260586 -27776572 - MSTA-int LTR MaLR -5 1646 1455 2140 133 23 47 chr3 190260586 190260970 -27776188 - THE1C LTR MaLR 0 375 1 9160 175 24 7 chr3 190260970 190262391 -27774767 - MSTA-int LTR MaLR -196 1455 1 2890 125 7 0 chr3 190262397 190262812 -27774346 - MSTA LTR MaLR -10 418 1 386 316 52 57 chr3 190262817 190263029 -27774129 + L1MEc LINE L1 156 366 -6030 407 248 91 16 chr3 190263052 190263173 -27773985 - L1ME1 LINE L1 -5904 301 172 2157 132 0 0 chr3 190263233 190263536 -27773622 - AluSg SINE Alu -7 303 1 289 297 51 40 chr3 190263571 190263827 -27773331 - L1MC/D LINE L1 -475 5646 5569 39 68 0 0 chr3 190263927 190264001 -27773157 + AT_rich Low_complexity Low_complexity 1 74 0 2457 182 25 19 chr3 190264359 190264842 -27772316 + MER41D LTR ERV1 1 486 -71 949 202 17 0 chr3 190264815 190264988 -27772170 + MER41D LTR ERV1 382 557 0 * 226 223 39 39 chr3 190265151 190265254 -27771904 + (TTTAA)n Simple_repeat Simple_repeat 4 106 0 341 189 44 44 chr3 190265826 190265916 -27771242 + L1MC4 LINE L1 6612 6701 -1341 280 129 0 32 chr3 190265917 190265979 -27771179 + (TA)n Simple_repeat Simple_repeat 2 61 0 234 300 25 0 chr3 190266538 190266618 -27770540 + GA-rich Low_complexity Low_complexity 3 84 0 186 43 0 0 chr3 190266839 190266862 -27770296 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 771 201 0 8 chr3 190267117 190267251 -27769907 - FLAM_C SINE Alu 0 133 1 2457 86 24 49 chr3 190267434 190267843 -27769315 + MLT2A1 LTR ERVL 1 399 -45 4911 74 11 0 chr3 190267843 190268466 -27768692 + HERVL LTR ERVL 2613 3242 -2412 2102 135 14 6 chr3 190268461 190268817 -27768341 + HERVL LTR ERVL 5043 5401 -253 * 540 195 14 14 chr3 190268999 190269208 -27767950 - L1MD2 LINE L1 -69 6290 6033 3129 111 44 6 chr3 190269369 190269848 -27767310 - LOR1a LTR ERV1 0 497 1 356 103 17 0 chr3 190270810 190270868 -27766290 + (CA)n Simple_repeat Simple_repeat 2 60 0 2742 136 33 0 chr3 190270989 190271408 -27765750 - LOR1a LTR ERV1 0 497 65 925 109 23 0 chr3 190271410 190271538 -27765620 + AluSg SINE Alu 1 131 -179 514 223 136 0 chr3 190271794 190271897 -27765261 + FLAM_A SINE Alu 6 122 -20 1621 220 76 31 chr3 190271918 190272432 -27764726 + L1ME3A LINE L1 5621 6157 -13 292 295 39 32 chr3 190272696 190272852 -27764306 + L2 LINE L2 1615 1771 -1543 297 301 139 48 chr3 190273380 190273546 -27763612 + MER20B DNA MER1_type 1 181 -602 35 71 0 0 chr3 190273559 190273629 -27763529 + AT_rich Low_complexity Low_complexity 1 70 0 266 105 0 0 chr3 190273629 190273667 -27763491 - L1P4 LINE L1 -503 5665 5628 * 4919 139 8 11 chr3 190273657 190274853 -27762305 - L1P4 LINE L1 -499 5675 4483 * 12089 154 8 2 chr3 190274845 190276955 -27760203 + L1P4 LINE L1 2342 4463 -1683 2230 123 0 0 chr3 190277171 190277479 -27759679 - AluSc SINE Alu -1 308 1 320 287 179 62 chr3 190278622 190278963 -27758195 - L2 LINE L2 -12 3301 2921 2556 36 7 3 chr3 190279054 190279363 -27757795 + AluY SINE Alu 1 310 -1 528 16 0 0 chr3 190279363 190279424 -27757734 + (TA)n Simple_repeat Simple_repeat 1 61 0 1828 237 94 62 chr3 190279735 190280079 -27757079 + MER77 LTR ERV1 23 393 -212 1388 225 131 3 chr3 190280079 190280430 -27756728 - MSTD LTR MaLR 0 396 1 1828 237 94 62 chr3 190280430 190280650 -27756508 + MER77 LTR ERV1 393 605 0 295 234 0 13 chr3 190280652 190280729 -27756429 - MIR SINE MIR -7 255 180 1773 185 55 35 chr3 190280729 190281096 -27756062 - MSTD LTR MaLR 0 396 23 595 314 0 6 chr3 190281135 190281294 -27755864 - MIR SINE MIR -78 184 27 324 320 0 49 chr3 190281737 190281859 -27755299 - MIR SINE MIR -130 132 17 2381 69 7 0 chr3 190282237 190282540 -27754618 + AluSp SINE Alu 1 305 -8 339 282 15 84 chr3 190282789 190282991 -27754167 + L2 LINE L2 3126 3313 0 26 82 0 0 chr3 190284440 190284501 -27752657 + AT_rich Low_complexity Low_complexity 1 61 0 371 376 21 35 chr3 190284685 190284975 -27752183 + L2 LINE L2 358 643 -2671 385 250 74 36 chr3 190285087 190285321 -27751837 + MER39 LTR ERV1 1 242 -402 6006 221 16 8 chr3 190285647 190287074 -27750084 + L1 LINE L1 3755 5193 -953 1568 216 19 32 chr3 190287074 190287444 -27749714 + MLT1A2 LTR MaLR 2 366 -8 2099 127 0 0 chr3 190287554 190287845 -27749313 - AluSx SINE Alu -17 295 5 302 312 113 54 chr3 190287848 190288034 -27749124 - MIR SINE MIR -41 221 25 1065 221 4 13 chr3 190288245 190288471 -27748687 - MER58A DNA MER1_type 0 224 1 243 395 19 56 chr3 190289812 190289974 -27747184 - L2 LINE L2 -17 3255 3100 334 363 50 0 chr3 190290030 190290190 -27746968 + MIR3 SINE MIR 13 180 -28 219 69 0 0 chr3 190292721 190292750 -27744408 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 261 348 15 22 chr3 190292888 190293023 -27744135 + LTR16C LTR ERVL 291 424 -67 * 1418 233 11 25 chr3 190293022 190293378 -27743780 + MLT1A2 LTR MaLR 24 374 0 1901 95 32 35 chr3 190293516 190293823 -27743335 + AluY SINE Alu 1 306 0 331 210 147 84 chr3 190293849 190293889 -27743269 + MER5A DNA MER1_type 38 74 -115 2264 101 7 7 chr3 190293889 190294196 -27742962 + AluSx SINE Alu 1 307 -5 331 210 147 84 chr3 190294196 190294298 -27742860 + MER5A DNA MER1_type 74 189 0 1827 215 76 37 chr3 190294502 190295018 -27742140 - MER90 LTR ERV1 0 614 79 274 322 109 38 chr3 190296281 190296492 -27740666 - MIR SINE MIR -6 256 31 24 32 0 0 chr3 190296567 190296598 -27740560 + AT_rich Low_complexity Low_complexity 1 31 0 5386 121 36 12 chr3 190296608 190296918 -27740240 - L1PA13 LINE L1 -19 6144 5843 1902 134 49 3 chr3 190296918 190297202 -27739956 - AluSg SINE Alu -11 299 3 5386 121 36 12 chr3 190297202 190298323 -27738835 - L1PA13 LINE L1 -320 5843 4697 7121 204 30 14 chr3 190298441 190300925 -27736233 - L1PA13 LINE L1 -3079 3718 1183 1947 137 37 0 chr3 190301112 190301411 -27735747 + AluSx SINE Alu 1 310 -2 188 122 24 0 chr3 190302104 190302145 -27735013 + (TA)n Simple_repeat Simple_repeat 2 43 0 327 119 0 0 chr3 190302155 190302212 -27734946 + MLT2B3 LTR ERVL 464 554 0 2230 123 0 0 chr3 190302382 190302690 -27734468 - AluSc SINE Alu -1 308 1 21 0 0 0 chr3 190303583 190303604 -27733554 + AT_rich Low_complexity Low_complexity 1 21 0 251 300 163 33 chr3 190304090 190304660 -27732498 + L1 LINE L1 4664 5307 -839 227 364 54 0 chr3 190304677 190304806 -27732352 + HAL1 LINE L1 6 141 -2366 30 27 0 0 chr3 190304944 190304981 -27732177 + AT_rich Low_complexity Low_complexity 1 37 0 339 282 15 84 chr3 190306575 190306777 -27730381 - L2 LINE L2 0 3313 3126 2369 72 7 0 chr3 190307023 190307328 -27729830 - AluSp SINE Alu -6 307 1 26 82 0 0 chr3 190307989 190308050 -27729108 + AT_rich Low_complexity Low_complexity 1 61 0 371 376 21 35 chr3 190308234 190308524 -27728634 + L2 LINE L2 358 643 -2671 1725 213 87 40 chr3 190308635 190309212 -27727946 + LTR48B LTR ERV1 1 604 -40 1161 175 0 18 chr3 190309217 190309440 -27727718 + MER4D LTR ERV1 1 219 -684 209 250 0 0 chr3 190309451 190309499 -27727659 + C-rich Low_complexity Low_complexity 1 48 0 6574 170 22 3 chr3 190309717 190310949 -27726209 + L1P LINE L1 3332 4586 -1560 21 36 0 0 chr3 190312099 190312127 -27725031 + GC_rich Low_complexity Low_complexity 1 28 0 230 296 0 14 chr3 190312143 190312214 -27724944 + CT-rich Low_complexity Low_complexity 2 71 0 3470 224 15 8 chr3 190312757 190313544 -27723614 - MLT1A1-int LTR MaLR -924 811 19 1281 127 5 11 chr3 190313861 190314050 -27723108 - AluSx SINE Alu -120 192 5 893 209 69 75 chr3 190314092 190314491 -27722667 - MLT1A1 LTR MaLR -10 383 1 2010 176 31 34 chr3 190316679 190317241 -27719917 - MLT2A2 LTR ERVL 0 554 1 808 301 77 11 chr3 190317241 190317610 -27719548 - LTR33A LTR ERVL -42 481 88 372 219 29 48 chr3 190318075 190318180 -27718978 - MLT1J2 LTR MaLR -4 446 344 525 250 69 15 chr3 190319587 190319791 -27717367 - HAL1 LINE L1 -1 2506 2292 271 265 265 10 chr3 190319788 190319984 -27717174 - L1MC4 LINE L1 0 8042 7797 * 207 262 0 0 chr3 190321923 190321965 -27715193 + MER5A DNA MER1_type 7 48 -141 184 231 0 0 chr3 190322008 190322047 -27715111 + MER5A DNA MER1_type 150 188 -1 27 49 0 0 chr3 190322067 190322108 -27715050 + AT_rich Low_complexity Low_complexity 1 41 0 413 300 82 39 chr3 190323547 190323778 -27713380 + L1ME3A LINE L1 5924 6164 0 50 31 0 0 chr3 190323825 190323889 -27713269 + AT_rich Low_complexity Low_complexity 1 64 0 188 122 24 0 chr3 190326014 190326055 -27711103 + (TA)n Simple_repeat Simple_repeat 2 43 0 327 119 0 0 chr3 190326065 190326122 -27711036 + MLT2B3 LTR ERVL 464 554 0 27 62 0 0 chr3 190326245 190326293 -27710865 + AT_rich Low_complexity Low_complexity 1 48 0 2318 114 3 0 chr3 190326294 190326602 -27710556 - AluSx SINE Alu -3 309 1 23 0 0 0 chr3 190326667 190326690 -27710468 + AT_rich Low_complexity Low_complexity 1 23 0 378 215 0 0 chr3 190326709 190326788 -27710370 + L1 LINE L1 2253 2331 -3815 5840 193 30 14 chr3 190326791 190327967 -27709191 + L1M4c LINE L1 18 1212 -5172 195 42 0 0 chr3 190327967 190327991 -27709167 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 1333 240 58 14 chr3 190327999 190328362 -27708796 + L1PBa LINE L1 7 385 -6478 670 220 26 21 chr3 190328359 190328550 -27708608 + L1M4c LINE L1 2911 3102 -3280 * 7749 221 32 14 chr3 190328565 190331086 -27706072 + L1PA3 LINE L1 3577 6152 -3 445 164 112 82 chr3 190331138 190331272 -27705886 - L2 LINE L2 0 3313 3176 1911 228 70 45 chr3 190333369 190333971 -27703187 + MLT1E3 LTR MaLR 5 621 -3 663 314 91 47 chr3 190335291 190335797 -27701361 + MLT1K LTR MaLR 49 576 -12 28 48 0 0 chr3 190335967 190336009 -27701149 + AT_rich Low_complexity Low_complexity 1 42 0 36 62 0 0 chr3 190336432 190336496 -27700662 + AT_rich Low_complexity Low_complexity 1 64 0 29 60 0 0 chr3 190336656 190336706 -27700452 + AT_rich Low_complexity Low_complexity 1 50 0 968 264 41 8 chr3 190336977 190337279 -27699879 + L1ME3A LINE L1 5577 5901 -269 370 251 101 73 chr3 190337283 190337462 -27699696 + L1ME3A LINE L1 5987 6170 0 213 329 57 32 chr3 190337757 190337915 -27699243 - L2 LINE L2 -1607 1707 1546 2093 148 0 0 chr3 190338304 190338607 -27698551 + AluSx SINE Alu 1 303 -9 1009 289 63 20 chr3 190338733 190339176 -27697982 - LTR16B LTR ERVL -2 462 1 207 69 0 0 chr3 190339295 190339324 -27697834 + (TAGA)n Simple_repeat Simple_repeat 2 30 0 654 281 279 6 chr3 190339400 190339766 -27697392 - L2 LINE L2 -2 3311 2846 186 103 0 0 chr3 190340055 190340084 -27697074 + (TAGA)n Simple_repeat Simple_repeat 2 30 0 751 244 115 97 chr3 190340160 190340621 -27696537 - L2 LINE L2 -2 3311 2785 1755 178 23 0 chr3 190340621 190340924 -27696234 - AluSp SINE Alu -1 312 3 751 244 115 97 chr3 190340924 190341042 -27696116 - L2 LINE L2 -528 2785 2671 377 315 0 0 chr3 190341157 190341268 -27695890 - LTR33 LTR ERVL -25 496 386 1296 137 1 41 chr3 190341287 190341458 -27695700 + L1MA5A LINE L1 5127 5303 -933 207 0 0 0 chr3 190341458 190341481 -27695677 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1296 137 1 41 chr3 190341481 190341686 -27695472 + L1MA5A LINE L1 5303 5493 -743 890 158 7 0 chr3 190341692 190341831 -27695327 + FRAM SINE Alu 13 152 -24 4280 134 47 36 chr3 190341836 190342651 -27694507 + L1MA5A LINE L1 5473 6296 -1 22 0 0 0 chr3 190342652 190342674 -27694484 + AT_rich Low_complexity Low_complexity 1 22 0 338 298 0 24 chr3 190343391 190343475 -27693683 - MIR SINE MIR -171 91 10 1206 292 84 17 chr3 190343505 190343894 -27693264 - MER77 LTR ERV1 -11 594 247 279 0 0 0 chr3 190343894 190343925 -27693233 + (ATTG)n Simple_repeat Simple_repeat 1 31 0 1206 292 84 17 chr3 190343925 190343985 -27693173 - MER77 LTR ERV1 -358 247 192 204 362 48 32 chr3 190344261 190344449 -27692709 + L2 LINE L2 2698 2888 -426 183 218 0 73 chr3 190344758 190344813 -27692345 + L2 LINE L2 2898 2948 -324 258 32 0 0 chr3 190344843 190344874 -27692284 + (CA)n Simple_repeat Simple_repeat 2 32 0 237 277 0 31 chr3 190345122 190345187 -27691971 + GA-rich Low_complexity Low_complexity 2 64 0 199 266 105 81 chr3 190345665 190345789 -27691369 + L2 LINE L2 3183 3309 -4 23 0 0 0 chr3 190346156 190346179 -27690979 + AT_rich Low_complexity Low_complexity 1 23 0 305 376 77 0 chr3 190346947 190347128 -27690030 + L2 LINE L2 2198 2392 -922 271 383 88 16 chr3 190347471 190347722 -27689436 + L2 LINE L2 2397 2665 -649 209 303 48 48 chr3 190347758 190347923 -27689235 + L2 LINE L2 2868 3032 -240 260 49 49 0 chr3 190348024 190348065 -27689093 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 727 210 0 0 chr3 190348065 190348184 -27688974 - FLAM_C SINE Alu -22 121 3 301 233 47 0 chr3 190348765 190348851 -27688307 - Alu SINE Alu 0 301 212 2008 136 0 3 chr3 190348856 190349142 -27688016 - AluSx SINE Alu -27 285 1 739 295 140 96 chr3 190351499 190352027 -27685131 + MLT1H1 LTR MaLR 3 595 0 307 337 90 30 chr3 190352050 190352216 -27684942 - L2 LINE L2 -375 2939 2764 273 98 0 0 chr3 190352347 190352388 -27684770 + (CA)n Simple_repeat Simple_repeat 1 41 0 279 263 51 34 chr3 190354344 190354462 -27682696 + MIR SINE MIR 99 218 -44 2063 114 3 17 chr3 190354963 190355260 -27681898 - AluSx SINE Alu -19 293 1 195 384 8 16 chr3 190356487 190356612 -27680546 + MIR SINE MIR 28 151 -57 219 321 145 13 chr3 190357295 190357454 -27679704 - L2 LINE L2 -1069 2245 2066 600 188 0 60 chr3 190357873 190358006 -27679152 + FLAM_C SINE Alu 1 125 -8 673 122 24 0 chr3 190358022 190358145 -27679013 + GA-rich Low_complexity Low_complexity 3 128 0 29 60 0 0 chr3 190359710 190359760 -27677398 + AT_rich Low_complexity Low_complexity 1 50 0 5002 177 56 35 chr3 190360242 190361412 -27675746 - L1MC3 LINE L1 -734 7051 5858 1738 142 42 0 chr3 190361412 190361673 -27675485 + AluSx SINE Alu 1 272 -40 290 129 16 0 chr3 190361673 190361735 -27675423 + (CAAG)n Simple_repeat Simple_repeat 1 63 0 479 111 49 7 chr3 190361741 190361885 -27675273 + GA-rich Low_complexity Low_complexity 1 150 0 852 201 10 10 chr3 190361885 190362079 -27675079 - L1MC3 LINE L1 -1924 5861 5668 * 999 269 29 5 chr3 190362071 190362360 -27674798 - L1MCb LINE L1 -5783 262 1 268 221 59 81 chr3 190363136 190363272 -27673886 - MIR SINE MIR -38 224 92 213 182 40 20 chr3 190363303 190363402 -27673756 + (TTTA)n Simple_repeat Simple_repeat 3 103 0 618 272 45 14 chr3 190363425 190363649 -27673509 + L1ME LINE L1 5536 5766 -396 1491 229 46 77 chr3 190363746 190364373 -27672785 + L1MB7 LINE L1 5580 6183 -1 689 132 9 0 chr3 190364382 190364496 -27672662 + L1MB5 LINE L1 6060 6174 0 1655 218 13 30 chr3 190364919 190365291 -27671867 + MLT1A2 LTR MaLR 1 366 -8 2099 127 0 0 chr3 190365401 190365692 -27671466 - AluSx SINE Alu -17 295 5 302 312 113 54 chr3 190365695 190365881 -27671277 - MIR SINE MIR -41 221 25 1065 221 4 13 chr3 190366092 190366318 -27670840 - MER58A DNA MER1_type 0 224 1 243 395 19 56 chr3 190367660 190367822 -27669336 - L2 LINE L2 -17 3255 3100 334 363 50 0 chr3 190367878 190368038 -27669120 + MIR3 SINE MIR 13 180 -28 219 69 0 0 chr3 190370569 190370598 -27666560 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 294 333 15 22 chr3 190370736 190370871 -27666287 + LTR16C LTR ERVL 291 424 -67 * 1468 228 11 25 chr3 190370870 190371226 -27665932 + MLT1A2 LTR MaLR 24 374 0 1901 95 32 35 chr3 190371364 190371671 -27665487 + AluY SINE Alu 1 306 0 295 146 12 134 chr3 190371697 190371737 -27665421 + MER5A DNA MER1_type 38 65 -124 2264 101 7 7 chr3 190371737 190372044 -27665114 + AluSx SINE Alu 1 307 -5 295 146 12 134 chr3 190372044 190372085 -27665073 + MER5A DNA MER1_type 65 109 -80 792 228 64 11 chr3 190372252 190372533 -27664625 + AluSp SINE Alu 1 296 -7 182 200 25 0 chr3 190372538 190372578 -27664580 + MER5A DNA MER1_type 61 101 -88 2235 205 70 28 chr3 190372852 190373393 -27663765 - MER90 LTR ERV1 0 614 51 1057 278 77 57 chr3 190374697 190374864 -27662294 - L2 LINE L2 -2 3311 3149 1624 149 58 14 chr3 190374864 190375140 -27662018 + AluJb SINE Alu 1 288 -24 1057 278 77 57 chr3 190375140 190375594 -27661564 - L2 LINE L2 -164 3149 2219 541 206 0 9 chr3 190375753 190375860 -27661298 + L1M3f LINE L1 43 148 -5180 1975 133 11 0 chr3 190376724 190377045 -27660113 + AluSg SINE Alu 1 324 0 2514 193 18 14 chr3 190377045 190377543 -27659615 + L1M3f LINE L1 21 520 -4808 666 168 30 15 chr3 190377652 190377783 -27659375 + L1MA4 LINE L1 1 133 -5195 14312 190 40 29 chr3 190377796 190378262 -27658896 + L1MA4 LINE L1 558 1017 -5465 227 0 44 44 chr3 190378262 190378307 -27658851 + (TAA)n Simple_repeat Simple_repeat 3 47 0 14312 190 40 29 chr3 190378307 190379448 -27657710 + L1MA4 LINE L1 1017 2143 -4339 2251 105 39 33 chr3 190379448 190379810 -27657348 + THE1B LTR MaLR 1 364 0 14312 190 40 29 chr3 190379810 190382623 -27654535 + L1MA4 LINE L1 2143 4921 -1561 2253 60 3 11 chr3 190382623 190382937 -27654221 - AluY SINE Alu 0 312 1 14312 190 40 29 chr3 190382937 190383844 -27653314 + L1MA4 LINE L1 4921 5973 -509 240 111 0 0 chr3 190383844 190383880 -27653278 + (TA)n Simple_repeat Simple_repeat 1 36 0 14312 190 40 29 chr3 190383880 190384112 -27653046 + L1MA4 LINE L1 5973 6201 -281 259 301 110 41 chr3 190385202 190385421 -27651737 - MIR SINE MIR 0 262 29 840 190 13 0 chr3 190385568 190385726 -27651432 - L1MA4 LINE L1 -297 6003 5844 242 284 85 35 chr3 190386053 190386194 -27650964 + MIR SINE MIR 99 246 -16 1771 89 0 13 chr3 190386884 190387120 -27650038 + AluSg1 SINE Alu 1 233 -76 24 53 0 0 chr3 190387965 190388003 -27649155 + AT_rich Low_complexity Low_complexity 1 38 0 289 85 17 17 chr3 190388537 190388596 -27648562 + (TA)n Simple_repeat Simple_repeat 1 59 0 518 279 111 5 chr3 190388605 190388795 -27648363 + MIR SINE MIR 53 262 0 311 125 0 0 chr3 190388856 190388904 -27648254 + L1MC5 LINE L1 7181 7228 -733 2670 166 86 37 chr3 190389481 190390077 -27647081 + MER4D LTR ERV1 279 903 0 237 281 0 0 chr3 190391146 190391203 -27645955 + MIR SINE MIR 3 59 -203 242 197 53 76 chr3 190391645 190391777 -27645381 + CT-rich Low_complexity Low_complexity 2 130 0 347 253 233 0 chr3 190391953 190392103 -27645055 - MIR SINE MIR 0 262 78 21 36 0 0 chr3 190392395 190392423 -27644735 + GC_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 190392685 190392713 -27644445 + GC_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr3 190392720 190392752 -27644406 + GC_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr3 190392988 190393009 -27644149 + GC_rich Low_complexity Low_complexity 1 21 0 3541 269 122 21 chr3 190394114 190395844 -27641314 - L2 LINE L2 -6 3307 1400 379 309 99 6 chr3 190396874 190397036 -27640122 + MIR3 SINE MIR 31 207 -1 298 290 19 39 chr3 190398135 190398290 -27638868 + L1MC5 LINE L1 7294 7445 -516 1023 342 55 30 chr3 190398327 190399017 -27638141 - HERV16 LTR ERVL -1654 4000 3294 660 220 0 0 chr3 190399028 190399160 -27637998 - FLAM_C SINE Alu 0 133 2 1075 257 80 86 chr3 190399213 190399901 -27637257 - LTR41 LTR ERVL -6 767 84 1909 142 0 4 chr3 190399958 190400239 -27636919 - AluSx SINE Alu -30 282 3 243 252 19 78 chr3 190400243 190400346 -27636812 - LTR41 LTR ERVL -676 97 1 1113 340 58 30 chr3 190400346 190401012 -27636146 - HERV16 LTR ERVL -1905 3091 2572 687 280 48 5 chr3 190401116 190401302 -27635856 + MIR SINE MIR 69 262 0 304 378 35 0 chr3 190401869 190402012 -27635146 - L1ME LINE L1 -520 5601 5454 196 291 82 53 chr3 190402928 190403134 -27634024 + L2 LINE L2 1990 2201 -1113 214 200 67 0 chr3 190403887 190403947 -27633211 + L2 LINE L2 3097 3160 -153 302 291 45 22 chr3 190404608 190404742 -27632416 + LTR16C LTR ERVL 287 423 -68 1979 151 29 35 chr3 190404834 190405211 -27631947 - THE1C LTR MaLR 0 375 1 270 309 48 24 chr3 190405985 190406111 -27631047 + L1MCa LINE L1 343 471 -5955 239 181 14 56 chr3 190406281 190406353 -27630805 + L1MC3 LINE L1 6467 6535 -1250 235 246 16 0 chr3 190406360 190406421 -27630737 + L1MC4a LINE L1 6625 6686 -1122 32 0 0 0 chr3 190406574 190406606 -27630552 + AT_rich Low_complexity Low_complexity 1 32 0 368 244 272 14 chr3 190406656 190406869 -27630289 - MLT1K LTR MaLR -8 580 313 2197 102 7 0 chr3 190406913 190407207 -27629951 + AluSx SINE Alu 1 296 -16 1236 177 115 96 chr3 190407577 190407681 -27629477 + MSTC LTR MaLR 3 104 -324 2015 112 36 10 chr3 190407681 190407985 -27629173 + AluSq SINE Alu 1 312 -1 1236 177 115 96 chr3 190407985 190408298 -27628860 + MSTC LTR MaLR 104 428 0 738 146 15 51 chr3 190409031 190409168 -27627990 + FLAM_C SINE Alu 1 132 -1 355 261 43 96 chr3 190409343 190409531 -27627627 - MLT1J2 LTR MaLR -5 445 268 1358 323 46 31 chr3 190409761 190410375 -27626783 + ERVL LTR ERVL 4720 5346 -418 2131 142 0 0 chr3 190410375 190410684 -27626474 + AluSx SINE Alu 1 309 -3 1358 323 46 31 chr3 190410684 190410740 -27626418 + ERVL LTR ERVL 5346 5400 -364 2251 118 3 0 chr3 190410994 190411299 -27625859 + AluSx SINE Alu 1 306 -6 237 281 141 52 chr3 190411343 190411535 -27625623 + LTR50 LTR ERVL 1 209 -586 763 203 35 35 chr3 190411719 190411921 -27625237 + LTR52 LTR ERVL 1 202 -219 2283 177 179 29 chr3 190411996 190412516 -27624642 + LTR18B LTR ERVL 17 614 0 1296 250 122 46 chr3 190412757 190413270 -27623888 - MLT1F1 LTR MaLR 0 567 22 258 221 26 13 chr3 190413395 190413472 -27623686 + LTR33A LTR ERVL 433 510 -13 471 162 14 0 chr3 190413548 190413622 -27623536 - MLT1J2 LTR MaLR -308 142 68 24 67 0 0 chr3 190413907 190413952 -27623206 + AT_rich Low_complexity Low_complexity 1 45 0 3764 222 46 16 chr3 190414282 190414717 -27622441 + L1M4c LINE L1 2023 2444 -3938 1867 194 9 3 chr3 190414717 190415063 -27622095 - MER7A DNA MER2_type 0 346 1 3764 222 46 16 chr3 190415063 190416281 -27620877 + L1M4c LINE L1 2444 3728 -2654 3427 195 25 26 chr3 190416298 190416985 -27620173 - MER21B LTR ERV1 -11 852 167 1403 161 16 4 chr3 190417015 190417257 -27619901 + MER39 LTR ERV1 463 707 0 1712 152 27 3 chr3 190417257 190417553 -27619605 + L1MB3 LINE L1 5453 5755 -416 1175 204 19 14 chr3 190417555 190417771 -27619387 + MER101B LTR ERV1 1 217 -353 234 253 88 11 chr3 190417929 190418020 -27619138 + LTR51 LTR ERV1 560 657 -14 755 144 69 17 chr3 190418087 190418260 -27618898 + L1MB3 LINE L1 6002 6183 0 27 49 0 0 chr3 190418525 190418566 -27618592 + AT_rich Low_complexity Low_complexity 1 41 0 2341 134 3 3 chr3 190418566 190418925 -27618233 - L1PB3 LINE L1 -7 6147 5789 24 32 0 0 chr3 190419324 190419355 -27617803 + AT_rich Low_complexity Low_complexity 1 31 0 879 80 8 8 chr3 190420969 190421094 -27616064 + THE1B LTR MaLR 240 364 0 1745 210 31 35 chr3 190421096 190421755 -27615403 + L1M1 LINE L1 3438 4083 -3482 279 258 43 43 chr3 190472212 190472305 -27564853 - L1MC/D LINE L1 -481 5640 5545 734 322 54 39 chr3 190472541 190472799 -27564359 - L3 LINE CR1 -897 680 412 576 277 102 13 chr3 190472799 190473034 -27564124 + MIR SINE MIR 4 259 -3 734 322 54 39 chr3 190473034 190473185 -27563973 - L3 LINE CR1 -1165 412 265 202 286 54 0 chr3 190473529 190473585 -27563573 - L2 LINE L2 -4 3268 3210 1643 122 167 27 chr3 190475013 190475342 -27561816 - THE1C LTR MaLR 0 375 1 182 264 97 28 chr3 190475921 190475993 -27561165 - L2 LINE L2 0 3313 3237 202 378 0 11 chr3 190476795 190476885 -27560273 - L2 LINE L2 0 3313 3225 213 277 175 24 chr3 190476988 190477154 -27560004 - L2 LINE L2 -5 3308 3118 505 95 0 24 chr3 190478245 190478329 -27558829 + AluSp/q SINE Alu 232 313 0 202 315 0 19 chr3 190478455 190478509 -27558649 - MIR SINE MIR -139 69 17 22 70 0 0 chr3 190479835 190479878 -27557280 + AT_rich Low_complexity Low_complexity 1 43 0 1823 179 10 0 chr3 190479907 190480208 -27556950 - AluSx SINE Alu -8 304 1 607 302 93 9 chr3 190480493 190480718 -27556440 - MIR SINE MIR -10 252 9 726 281 150 65 chr3 190482576 190482768 -27554390 - LTR67 LTR ERVL 0 557 383 2888 201 26 6 chr3 190482768 190483315 -27553843 - MER68 LTR ERV1 0 562 5 726 281 150 65 chr3 190483315 190483634 -27553524 - LTR67 LTR ERVL -174 383 2 1987 138 18 61 chr3 190484373 190484765 -27552393 - THE1C LTR MaLR 0 375 1 896 179 179 9 chr3 190486281 190486499 -27550659 - MER2 DNA MER2_type -6 339 85 2666 124 0 5 chr3 190486508 190486904 -27550254 - L1PA13 LINE L1 -20 6143 5750 22 35 0 0 chr3 190487106 190487135 -27550023 + AT_rich Low_complexity Low_complexity 1 29 0 1949 157 0 3 chr3 190487775 190488087 -27549071 - AluJb SINE Alu -1 311 1 286 341 106 34 chr3 190488238 190488417 -27548741 + MIR SINE MIR 20 211 -51 418 311 105 18 chr3 190488496 190488724 -27548434 - MIR SINE MIR -1 261 14 1127 178 206 7 chr3 190489594 190489875 -27547283 - LTR47A LTR ERVL -114 338 2 1643 194 36 22 chr3 190489879 190490239 -27546919 - MLT1A1 LTR MaLR 0 365 1 275 281 44 88 chr3 190490268 190490382 -27546776 + MIR3 SINE MIR 58 166 -42 204 299 62 21 chr3 190490670 190490767 -27546391 - MIR SINE MIR -99 163 63 211 309 49 0 chr3 190490781 190490862 -27546296 + L2 LINE L2 3179 3263 -50 705 203 99 0 chr3 190491292 190491484 -27545674 - MER31A LTR ERV1 0 485 275 1910 166 26 31 chr3 190491687 190491838 -27545320 - MER31A LTR ERV1 -102 383 233 2066 121 3 7 chr3 190491838 190492136 -27545022 - AluSc SINE Alu -12 297 1 1910 166 26 31 chr3 190492136 190492369 -27544789 - MER31A LTR ERV1 -252 233 1 24 0 0 0 chr3 190494014 190494038 -27543120 + AT_rich Low_complexity Low_complexity 1 24 0 534 272 70 30 chr3 190494167 190494468 -27542690 - L1MEd LINE L1 -3118 3011 2699 1657 195 29 125 chr3 190494502 190495015 -27542143 - LTR42 LTR ERVL -15 480 17 383 288 73 38 chr3 190495092 190495544 -27541614 - L1MEd LINE L1 -3450 2679 2212 4442 170 21 11 chr3 190495668 190496493 -27540665 - L1MC2 LINE L1 -44 6300 5468 228 307 57 36 chr3 190496949 190497141 -27540017 - HAL1 LINE L1 -945 1562 1367 631 315 49 26 chr3 190497144 190497452 -27539706 - L1MEd LINE L1 -4910 1209 895 26 101 0 0 chr3 190497835 190497924 -27539234 + AT_rich Low_complexity Low_complexity 1 89 0 26 64 0 0 chr3 190498015 190498062 -27539096 + AT_rich Low_complexity Low_complexity 1 47 0 802 129 136 0 chr3 190498280 190498427 -27538731 + LTR47A LTR ERVL 286 452 0 3265 138 43 4 chr3 190498783 190499290 -27537868 + MER1A DNA MER1_type 1 527 0 2455 179 96 8 chr3 190499326 190499839 -27537319 + MER68 LTR ERV1 3 560 -2 1674 186 0 17 chr3 190500524 190500825 -27536333 + AluJo SINE Alu 1 296 -16 330 115 0 0 chr3 190501543 190501595 -27535563 + (CA)n Simple_repeat Simple_repeat 2 53 0 1538 229 72 32 chr3 190501718 190501970 -27535188 + MER39 LTR ERV1 259 500 -207 2117 94 7 0 chr3 190501970 190502258 -27534900 + AluSq SINE Alu 1 290 -23 1538 229 72 32 chr3 190502258 190502426 -27534732 + MER39 LTR ERV1 500 699 -8 1687 186 52 6 chr3 190502426 190502775 -27534383 + MLT1A1 LTR MaLR 1 365 0 255 326 31 16 chr3 190502854 190502983 -27534175 + L1ME4a LINE L1 5541 5671 -450 235 202 24 24 chr3 190503056 190503140 -27534018 + GA-rich Low_complexity Low_complexity 3 86 0 364 254 85 51 chr3 190503160 190503337 -27533821 + L1ME4a LINE L1 5745 5927 -194 32 26 0 0 chr3 190503427 190503466 -27533692 + AT_rich Low_complexity Low_complexity 1 39 0 24 77 0 0 chr3 190504452 190504504 -27532654 + AT_rich Low_complexity Low_complexity 1 52 0 25 0 0 0 chr3 190505130 190505155 -27532003 + AT_rich Low_complexity Low_complexity 1 25 0 190 225 300 0 chr3 190505457 190505537 -27531621 + L3 LINE CR1 1435 1538 -39 1591 185 3 7 chr3 190506185 190506471 -27530687 + AluJb SINE Alu 1 285 -27 26 0 0 0 chr3 190506471 190506497 -27530661 + AT_rich Low_complexity Low_complexity 1 26 0 1026 290 96 14 chr3 190506800 190507362 -27529796 - L1ME4a LINE L1 -5 6116 5509 1297 172 134 0 chr3 190507787 190508077 -27529081 + LTR56 LTR ERV1 43 371 -74 236 326 31 0 chr3 190508323 190508421 -27528737 + HAL1 LINE L1 37 137 -2370 1253 185 0 4 chr3 190508448 190508675 -27528483 + AluJb SINE Alu 82 307 -5 615 283 228 32 chr3 190508788 190509724 -27527434 + HAL1 LINE L1 249 1367 -1140 303 256 196 105 chr3 190509746 190510144 -27527014 + HAL1 LINE L1 1476 1836 -671 1497 220 3 10 chr3 190510144 190510449 -27526709 + AluJo SINE Alu 1 303 -9 2167 121 0 13 chr3 190510453 190510766 -27526392 + AluSc SINE Alu 1 309 0 303 256 196 105 chr3 190510766 190511229 -27525929 + HAL1 LINE L1 1838 2421 -86 1998 144 0 3 chr3 190511290 190511596 -27525562 - AluSx SINE Alu -7 305 1 336 266 47 81 chr3 190512485 190512680 -27524478 + MER41A LTR ERV1 97 292 -262 2156 194 5 0 chr3 190512680 190513057 -27524101 + MER66A-int LTR ERV1 6298 6676 0 1432 205 101 9 chr3 190513161 190513517 -27523641 + MER66A LTR ERV1 97 478 0 270 0 0 0 chr3 190515312 190515342 -27521816 + (T)n Simple_repeat Simple_repeat 1 30 0 294 336 168 0 chr3 190516102 190516245 -27520913 + MIR SINE MIR 84 250 -12 191 238 68 75 chr3 190517037 190517184 -27519974 + L2 LINE L2 3111 3256 -57 37 69 0 0 chr3 190517236 190517308 -27519850 + AT_rich Low_complexity Low_complexity 1 72 0 26 0 0 0 chr3 190517706 190517732 -27519426 + AT_rich Low_complexity Low_complexity 1 26 0 319 200 43 0 chr3 190517795 190517865 -27519293 - L1ME2 LINE L1 -18 6146 6074 479 299 63 0 chr3 190517878 190518099 -27519059 - L1MEc LINE L1 -5453 943 709 21 36 0 0 chr3 190518716 190518744 -27518414 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr3 190518879 190518910 -27518248 + AT_rich Low_complexity Low_complexity 1 31 0 333 256 13 0 chr3 190519266 190519344 -27517814 - MER103 DNA DNA -84 82 4 415 218 0 0 chr3 190519454 190519541 -27517617 - MER5A DNA MER1_type -83 106 20 245 200 0 0 chr3 190519909 190519944 -27517214 + G-rich Low_complexity Low_complexity 1 35 0 217 175 38 25 chr3 190519957 190520063 -27517095 + T-rich Low_complexity Low_complexity 1 107 0 229 333 89 22 chr3 190522340 190522430 -27514728 - MIR SINE MIR -147 115 20 22 0 0 0 chr3 190523332 190523354 -27513804 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 190523599 190523621 -27513537 + AT_rich Low_complexity Low_complexity 1 22 0 201 154 0 0 chr3 190523941 190523980 -27513178 + T-rich Low_complexity Low_complexity 1 39 0 26 0 0 0 chr3 190526383 190526409 -27510749 + AT_rich Low_complexity Low_complexity 1 26 0 3774 174 77 11 chr3 190530485 190531325 -27505833 - MER4D LTR ERV1 0 866 1 240 303 83 9 chr3 190531493 190531602 -27505556 - L2 LINE L2 -6 3307 3191 437 312 127 0 chr3 190531926 190532083 -27505075 + L2 LINE L2 3095 3271 -1 21 0 0 0 chr3 190532657 190532678 -27504480 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr3 190533457 190533486 -27503672 + AT_rich Low_complexity Low_complexity 1 29 0 194 328 0 0 chr3 190533716 190533780 -27503378 + L2 LINE L2 3249 3312 -1 432 297 83 28 chr3 190533877 190534022 -27503136 + MIR SINE MIR 109 261 -1 462 224 231 20 chr3 190534500 190534647 -27502511 + MER5B DNA MER1_type 1 178 0 588 280 157 34 chr3 190534802 190535127 -27502031 + MLT1L LTR MaLR 138 502 -113 3855 44 38 2 chr3 190536182 190536677 -27500481 - LTR10D LTR ERV1 0 513 1 1711 122 156 19 chr3 190538713 190539033 -27498125 + THE1B LTR MaLR 1 364 0 10488 108 26 12 chr3 190539033 190540592 -27496566 + THE1B-int LTR MaLR 1 1580 0 1937 145 78 15 chr3 190540592 190540924 -27496234 + THE1B LTR MaLR 1 353 -11 1635 164 16 0 chr3 190540929 190541185 -27495973 - AluSx SINE Alu -50 262 3 22 0 0 0 chr3 190541197 190541219 -27495939 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 190541425 190541446 -27495712 + AT_rich Low_complexity Low_complexity 1 21 0 909 237 11 0 chr3 190541446 190541632 -27495526 - MER58A DNA MER1_type -34 190 3 2047 140 7 3 chr3 190541996 190542289 -27494869 - AluSp SINE Alu -11 302 9 338 270 100 37 chr3 190542426 190542715 -27494443 + L1M4 LINE L1 3431 3738 -2408 767 232 28 17 chr3 190542733 190542910 -27494248 - AluSg/x SINE Alu 0 312 134 488 300 118 20 chr3 190542958 190543358 -27493800 + L1M4 LINE L1 3935 4373 -1773 884 216 59 10 chr3 190543465 190543669 -27493489 - MIR SINE MIR -34 228 15 358 197 66 0 chr3 190543796 190543872 -27493286 + MER63A DNA MER1_type 1 81 0 1761 173 3 13 chr3 190543872 190544179 -27492979 - AluJb SINE Alu 0 312 9 22 35 0 0 chr3 190544308 190544337 -27492821 + AT_rich Low_complexity Low_complexity 1 29 0 2151 114 0 23 chr3 190544349 190544655 -27492503 + AluSx SINE Alu 3 301 -11 342 0 0 0 chr3 190544878 190544916 -27492242 + (TA)n Simple_repeat Simple_repeat 2 39 0 1672 178 7 0 chr3 190544917 190545198 -27491960 - AluJo SINE Alu -19 293 11 278 200 280 20 chr3 190545253 190545353 -27491805 - L2 LINE L2 0 3313 3188 399 175 113 0 chr3 190545482 190545562 -27491596 - MSTB2 LTR MaLR -368 89 1 441 286 51 0 chr3 190545562 190545660 -27491498 + MER63A DNA MER1_type 97 199 -11 1585 229 82 8 chr3 190546305 190546780 -27490378 - L1ME2 LINE L1 -104 6060 5551 30 0 0 0 chr3 190546782 190546812 -27490346 + AT_rich Low_complexity Low_complexity 1 30 0 274 333 0 0 chr3 190547444 190547516 -27489642 - L2 LINE L2 0 3313 3242 1951 130 7 0 chr3 190547539 190547824 -27489334 - AluSp SINE Alu -26 287 1 181 320 0 0 chr3 190547824 190547874 -27489284 - L2 LINE L2 -62 3210 3161 1393 306 65 31 chr3 190549168 190550410 -27486748 + L1ME2 LINE L1 381 1719 -4542 2081 248 55 20 chr3 190550596 190551367 -27485791 + L1ME2 LINE L1 5234 6071 -27 1742 212 77 19 chr3 190552070 190552730 -27484428 - L1ME1 LINE L1 -5 6161 5425 539 287 64 13 chr3 190553344 190553648 -27483510 + MLT1I LTR MaLR 33 409 0 227 306 35 56 chr3 190553810 190553954 -27483204 - L2 LINE L2 -1382 1932 1792 2130 124 0 13 chr3 190554253 190554552 -27482606 - AluSx SINE Alu -17 295 1 203 308 112 0 chr3 190555793 190555900 -27481258 - L2 LINE L2 -1217 2097 1979 221 265 84 24 chr3 190556846 190556929 -27480229 + MER5B DNA MER1_type 91 178 0 970 290 0 20 chr3 190557489 190557741 -27479417 + MIR SINE MIR 15 261 -1 25 0 0 0 chr3 190557961 190557986 -27479172 + AT_rich Low_complexity Low_complexity 1 25 0 2013 192 128 5 chr3 190558072 190558479 -27478679 - LTR32 LTR ERVL 0 471 15 3760 55 0 0 chr3 190558502 190558971 -27478187 - L1PA5 LINE L1 0 6154 5686 15656 100 11 4 chr3 190558971 190561170 -27475988 - L1P LINE L1 -3923 2223 11 21 0 0 0 chr3 190562155 190562176 -27474982 + AT_rich Low_complexity Low_complexity 1 21 0 397 274 16 102 chr3 190562353 190562539 -27474619 + MIR SINE MIR 90 259 -3 21 0 0 0 chr3 190563087 190563108 -27474050 + AT_rich Low_complexity Low_complexity 1 21 0 242 191 29 38 chr3 190563490 190563595 -27473563 + (TTTG)n Simple_repeat Simple_repeat 1 104 0 23 0 0 0 chr3 190563895 190563918 -27473240 + AT_rich Low_complexity Low_complexity 1 23 0 884 40 0 135 chr3 190563939 190564087 -27473071 - L1PA3 LINE L1 -3 6152 6025 281 186 14 0 chr3 190564604 190564674 -27472484 + GA-rich Low_complexity Low_complexity 1 71 0 695 304 47 24 chr3 190564985 190565238 -27471920 - MIR SINE MIR -2 260 2 205 335 168 19 chr3 190565938 190566093 -27471065 + MIR SINE MIR 8 185 -77 289 414 48 0 chr3 190566335 190566480 -27470678 - MER5B DNA MER1_type -2 176 25 583 241 96 21 chr3 190566712 190566899 -27470259 + MER63A DNA MER1_type 6 206 -4 295 238 24 12 chr3 190566913 190566997 -27470161 + CT-rich Low_complexity Low_complexity 2 86 0 2133 88 11 3 chr3 190567415 190567753 -27469405 + AluSp SINE Alu 1 340 0 791 216 96 0 chr3 190568131 190568298 -27468860 - MER5A DNA MER1_type 0 189 7 186 321 101 48 chr3 190568369 190568537 -27468621 + L2 LINE L2 2154 2330 -984 232 378 0 0 chr3 190568545 190568619 -27468539 - MIR SINE MIR -177 85 12 2616 206 50 11 chr3 190568695 190569235 -27467923 - MER68 LTR ERV1 0 562 2 1014 96 23 34 chr3 190572231 190572259 -27464899 - L1MA3 LINE L1 0 7724 7697 2005 154 144 5 chr3 190572259 190572635 -27464523 - MSTA LTR MaLR 0 428 1 1014 96 23 34 chr3 190572635 190572783 -27464375 - L1MA3 LINE L1 -27 7697 7550 13842 181 35 20 chr3 190572783 190576443 -27460715 - L1MA3 LINE L1 -608 7116 3396 1978 136 54 0 chr3 190576443 190576738 -27460420 - AluSx SINE Alu -1 311 1 13842 181 35 20 chr3 190576738 190576860 -27460298 - L1MA3 LINE L1 -4328 3396 3277 44163 40 2 2 chr3 190576861 190583012 -27454146 + L1PA3 LINE L1 1 6152 -3 1156 166 45 0 chr3 190583015 190583262 -27453896 - L1MA3 LINE L1 -4264 3301 3044 2167 112 3 19 chr3 190583267 190583581 -27453577 - AluSg SINE Alu -1 309 1 2088 142 3 3 chr3 190583844 190584153 -27453005 + AluSx SINE Alu 1 309 -3 780 213 68 36 chr3 190584290 190584511 -27452647 - MIR SINE MIR 0 262 35 281 351 86 13 chr3 190584783 190584934 -27452224 + MIR SINE MIR 27 188 -74 2256 152 80 10 chr3 190585193 190585582 -27451576 + MSTB LTR MaLR 11 426 0 1377 183 28 0 chr3 190585651 190585902 -27451256 - Tigger3(Golem) DNA MER2_type 0 3038 2781 617 188 0 110 chr3 190585899 190585980 -27451178 - Tigger3(Golem) DNA MER2_type -1089 142 84 * 1168 190 81 63 chr3 190585980 190586264 -27450894 + AluJb SINE Alu 1 289 -13 617 188 0 110 chr3 190586264 190586336 -27450822 - Tigger3(Golem) DNA MER2_type -1147 84 6 1609 181 39 93 chr3 190587631 190587856 -27449302 - MLT1A1 LTR MaLR 0 365 129 2594 42 3 6 chr3 190587856 190588168 -27448990 - AluY SINE Alu 0 311 1 1248 192 124 11 chr3 190588168 190588434 -27448724 - AluJo SINE Alu -6 296 1 1609 181 39 93 chr3 190588434 190588593 -27448565 - MLT1A1 LTR MaLR -234 131 1 1152 141 0 0 chr3 190588706 190588876 -27448282 - FRAM SINE Alu -14 162 1 4436 170 73 19 chr3 190588888 190589219 -27447939 - L1PB4 LINE L1 -14 6142 5830 1915 109 0 22 chr3 190589219 190589495 -27447663 - AluSx SINE Alu 0 312 43 4436 170 73 19 chr3 190589495 190590896 -27446262 - L1PB4 LINE L1 -326 5830 4355 965 184 13 26 chr3 190590877 190591105 -27446053 - L1PB4 LINE L1 -2057 4089 3865 * 2092 126 3 13 chr3 190591190 190591499 -27445659 + AluSp SINE Alu 1 306 -7 443 337 115 25 chr3 190592085 190592394 -27444764 - L2 LINE L2 -335 2937 2596 623 246 64 54 chr3 190592561 190592764 -27444394 + Charlie8 DNA MER1_type 46 250 -2167 241 254 0 0 chr3 190592833 190592888 -27444270 + Charlie8 DNA MER1_type 1369 1423 -994 24 32 0 0 chr3 190593752 190593783 -27443375 + AT_rich Low_complexity Low_complexity 1 31 0 22 88 0 0 chr3 190593814 190593871 -27443287 + AT_rich Low_complexity Low_complexity 1 57 0 192 316 234 6 chr3 190595365 190595523 -27441635 - MIR SINE MIR -21 241 48 21 36 0 0 chr3 190596097 190596125 -27441033 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr3 190596575 190596605 -27440553 + AT_rich Low_complexity Low_complexity 1 30 0 27 81 0 0 chr3 190597378 190597440 -27439718 + AT_rich Low_complexity Low_complexity 1 62 0 2070 115 0 42 chr3 190597548 190597861 -27439297 + AluSg SINE Alu 1 300 -10 740 309 88 33 chr3 190597924 190598470 -27438688 + L1ME1 LINE L1 263 838 -5769 355 281 106 33 chr3 190598455 190598712 -27438446 + L1ME1 LINE L1 1484 1952 -4655 * 4158 248 88 24 chr3 190598800 190600927 -27436231 + L1ME1 LINE L1 2062 4288 -2138 675 203 73 31 chr3 190600927 190601096 -27436062 + MLT1B LTR MaLR 1 161 -220 2165 88 0 79 chr3 190601096 190601424 -27435734 + AluSc SINE Alu 1 302 -7 675 203 73 31 chr3 190601424 190601464 -27435694 + MLT1B LTR MaLR 161 198 -183 327 256 0 0 chr3 190601465 190601543 -27435615 + MLT1B LTR MaLR 311 388 -2 916 209 35 78 chr3 190601545 190601918 -27435240 + L1ME1 LINE L1 4284 4640 -1786 591 192 40 8 chr3 190601931 190602056 -27435102 - AluJb SINE Alu -183 129 1 751 235 39 28 chr3 190602079 190602364 -27434794 + L1ME1 LINE L1 4661 4948 -1478 2230 207 67 43 chr3 190602364 190602411 -27434747 + L1ME1 LINE L1 5679 5723 -723 2430 71 0 0 chr3 190602411 190602707 -27434451 + AluY SINE Alu 3 298 -13 2230 207 67 43 chr3 190602707 190603312 -27433846 + L1ME1 LINE L1 5723 6347 -99 21 57 0 0 chr3 190603710 190603745 -27433413 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr3 190603818 190603840 -27433318 + AT_rich Low_complexity Low_complexity 1 22 0 269 208 137 55 chr3 190603884 190604067 -27433091 + L1ME4a LINE L1 5255 5452 -2356 290 239 244 5 chr3 190604079 190604288 -27432870 + L1ME4a LINE L1 5499 5757 -364 2130 132 0 0 chr3 190604343 190604638 -27432520 + AluSx SINE Alu 3 297 -15 242 271 0 0 chr3 190604783 190604842 -27432316 + (CA)n Simple_repeat Simple_repeat 2 60 0 282 271 56 9 chr3 190604846 190604953 -27432205 + L1ME4a LINE L1 5974 6085 -36 291 262 16 60 chr3 190606264 190606447 -27430711 + G-rich Low_complexity Low_complexity 5 179 0 22 0 0 0 chr3 190607133 190607155 -27430003 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr3 190607795 190607826 -27429332 + AT_rich Low_complexity Low_complexity 1 31 0 2176 107 3 0 chr3 190608343 190608634 -27428524 - AluSg SINE Alu -17 293 2 1452 232 83 22 chr3 190609536 190610124 -27427034 + L1ME1 LINE L1 3071 3701 -2445 2732 10 0 0 chr3 190610124 190610424 -27426734 + AluYa5 SINE Alu 1 300 -11 1452 232 83 22 chr3 190610424 190610461 -27426697 + L1ME1 LINE L1 3701 3734 -2412 1074 137 0 0 chr3 190610481 190610642 -27426516 + AluSg/x SINE Alu 137 297 -15 4802 230 31 76 chr3 190610688 190612298 -27424860 + L1ME1 LINE L1 3804 5268 -902 1570 180 56 3 chr3 190612298 190612620 -27424538 - MER44D DNA MER2_type 0 609 1 4802 230 31 76 chr3 190612620 190613484 -27423674 + L1ME1 LINE L1 5268 6170 0 286 349 152 0 chr3 190613753 190613885 -27423273 - L2 LINE L2 0 3272 3121 618 196 8 45 chr3 190614024 190614157 -27423001 - FLAM_C SINE Alu -4 129 2 195 42 0 0 chr3 190614969 190614993 -27422165 + (TA)n Simple_repeat Simple_repeat 1 24 0 184 241 56 0 chr3 190615476 190615530 -27421628 - MIR3 SINE MIR -1 207 151 200 240 0 20 chr3 190616383 190616433 -27420725 + L2 LINE L2 3220 3268 -4 361 316 46 51 chr3 190617574 190617626 -27419532 + L2 LINE L2 2579 2630 -684 1987 48 8 0 chr3 190617626 190617877 -27419281 - L1PA5 LINE L1 -1 6153 5901 361 316 46 51 chr3 190617877 190618020 -27419138 + L2 LINE L2 2630 2773 -541 305 350 98 6 chr3 190618326 190618489 -27418669 + L2 LINE L2 3106 3283 -30 1174 231 48 37 chr3 190618665 190619123 -27418035 - MLT1B LTR MaLR 0 467 1 203 304 74 40 chr3 190619341 190619489 -27417669 + MIR3 SINE MIR 52 204 -4 2237 125 0 0 chr3 190619959 190620272 -27416886 - AluSq SINE Alu 0 313 1 3135 182 26 11 chr3 190621692 190622357 -27414801 - L1MB8 LINE L1 -11 6167 5493 2182 211 80 10 chr3 190622409 190623075 -27414083 - L1M4 LINE L1 -646 5538 4837 575 335 43 14 chr3 190623812 190624021 -27413137 - MIR SINE MIR -28 234 20 3031 183 35 23 chr3 190625508 190626116 -27411042 + L1MCa LINE L1 1 615 -5811 441 212 0 12 chr3 190626119 190626204 -27410954 + L1MCa LINE L1 573 656 -5770 * 511 111 0 0 chr3 190626201 190626273 -27410885 - L1P4 LINE L1 -510 5653 5582 43091 44 4 2 chr3 190626435 190632562 -27404596 + L1PA3 LINE L1 11 6152 -3 16591 175 58 14 chr3 190632565 190632817 -27404341 - L1M1 LINE L1 -4264 3301 3061 2101 116 3 19 chr3 190632817 190633128 -27404030 - AluSg SINE Alu -1 309 4 16591 175 58 14 chr3 190633128 190636023 -27401135 - L1M1 LINE L1 -4504 3061 18 207 200 25 12 chr3 190636897 190636977 -27400181 + CT-rich Low_complexity Low_complexity 2 82 0 604 336 46 8 chr3 190639146 190639384 -27397774 + L3b LINE CR1 1256 1502 -81 464 294 41 20 chr3 190641088 190641234 -27395924 - MIR SINE MIR 0 262 114 373 309 55 0 chr3 190641378 190641488 -27395670 - L2 LINE L2 -2 3270 3155 388 330 70 0 chr3 190641530 190641645 -27395513 + MER119 DNA MER1_type 11 133 -450 * 655 214 41 77 chr3 190641643 190641839 -27395319 + MER119 DNA MER1_type 395 583 0 247 296 87 35 chr3 190643163 190643278 -27393880 - MLT1J LTR MaLR -165 346 226 1267 166 53 8 chr3 190643682 190643929 -27393229 - Tigger2 DNA MER2_type 0 2718 2461 2233 61 0 17 chr3 190643989 190644284 -27392874 + AluY SINE Alu 1 290 -21 3019 117 80 83 chr3 190644310 190644945 -27392213 - Tigger2 DNA MER2_type -2084 634 2 2274 101 0 0 chr3 190645574 190645871 -27391287 + AluSx SINE Alu 1 297 -15 1912 163 3 0 chr3 190646294 190646600 -27390558 - AluJb SINE Alu -5 307 1 32 0 0 0 chr3 190646802 190646834 -27390324 + AT_rich Low_complexity Low_complexity 1 32 0 540 251 155 44 chr3 190646834 190647241 -27389917 + L1ME4a LINE L1 5648 6099 -22 342 273 137 31 chr3 190647410 190647749 -27389409 - L1ME LINE L1 -461 5660 5270 25 65 0 0 chr3 190647924 190647970 -27389188 + AT_rich Low_complexity Low_complexity 1 46 0 4279 159 20 16 chr3 190648541 190649340 -27387818 + L1PB4 LINE L1 5353 6154 -2 2234 96 7 3 chr3 190649438 190649740 -27387418 + AluSg SINE Alu 1 303 -7 292 356 0 0 chr3 190649740 190649827 -27387331 - MIR3 SINE MIR -44 164 78 23 78 0 0 chr3 190651380 190651431 -27385727 + AT_rich Low_complexity Low_complexity 1 51 0 346 243 90 18 chr3 190653068 190653179 -27383979 + 7SK RNA RNA 1 119 -74 500 303 39 81 chr3 190653496 190653856 -27383302 - L2 LINE L2 -3 3310 2966 2281 107 0 3 chr3 190653898 190654208 -27382950 + AluSc SINE Alu 1 309 0 405 321 74 25 chr3 190655118 190655280 -27381878 + MIR SINE MIR 20 189 -73 23 0 0 0 chr3 190656676 190656699 -27380459 + AT_rich Low_complexity Low_complexity 1 23 0 2157 119 0 0 chr3 190656751 190657044 -27380114 - AluSx SINE Alu -17 295 3 6070 148 28 16 chr3 190657344 190658721 -27378437 + L1MA4A LINE L1 4899 6301 -2 287 211 211 49 chr3 190658786 190659051 -27378107 + L1ME4a LINE L1 5657 5964 -157 24 0 0 0 chr3 190659356 190659380 -27377778 + AT_rich Low_complexity Low_complexity 1 24 0 189 307 118 39 chr3 190659653 190659780 -27377378 - L2 LINE L2 -194 3078 2942 473 230 42 98 chr3 190660606 190660836 -27376322 - MER63 DNA MER1_type 0 1688 1 695 230 141 3 chr3 190660915 190661198 -27375960 - Charlie2 DNA MER1_type 0 2862 2541 215 195 0 0 chr3 190661384 190661425 -27375733 + MER5B DNA MER1_type 1 41 -137 552 209 348 7 chr3 190662299 190662601 -27374557 + MLT1E1 LTR MaLR 185 589 -65 * 599 201 79 7 chr3 190662596 190662735 -27374423 - MER68 LTR ERV1 -18 544 396 1820 156 0 10 chr3 190663006 190663295 -27373863 - AluJb SINE Alu -18 294 9 1932 105 49 3 chr3 190663557 190663843 -27373315 - AluSg SINE Alu -11 299 1 2335 106 0 0 chr3 190664133 190664444 -27372714 - AluSx SINE Alu -1 311 1 295 238 24 12 chr3 190664864 190664948 -27372210 + GA-rich Low_complexity Low_complexity 2 86 0 522 251 94 21 chr3 190664962 190665153 -27372005 - MER63A DNA MER1_type -4 206 2 301 311 40 40 chr3 190665354 190665505 -27371653 - L1M2 LINE L1 -5539 1310 1160 456 310 28 0 chr3 190665966 190666111 -27371047 - MER20B DNA MER1_type -607 176 28 215 272 99 25 chr3 190667149 190667230 -27369928 + MER5B DNA MER1_type 92 178 0 970 290 0 20 chr3 190667790 190668042 -27369116 + MIR SINE MIR 15 261 -1 608 188 17 0 chr3 190668453 190668570 -27368588 + MLT1E3 LTR MaLR 78 196 -428 2303 96 3 6 chr3 190668583 190668895 -27368263 - AluY SINE Alu 0 311 1 21 0 0 0 chr3 190669004 190669025 -27368133 + AT_rich Low_complexity Low_complexity 1 21 0 3481 68 0 4 chr3 190669025 190669481 -27367677 - L1PA5 LINE L1 -15 6139 5686 919 132 13 0 chr3 190669481 190669633 -27367525 - L1P LINE L1 -3923 2223 2070 539 287 64 13 chr3 190669972 190670276 -27366882 + MLT1I LTR MaLR 33 409 0 661 170 0 0 chr3 190671118 190671230 -27365928 + AluSg/x SINE Alu 192 303 -7 1698 178 7 0 chr3 190671468 190671749 -27365409 - AluJo SINE Alu -19 293 11 323 200 270 10 chr3 190671804 190671904 -27365254 - L2 LINE L2 0 3313 3188 2166 107 0 7 chr3 190672049 190672338 -27364820 + AluSg SINE Alu 1 287 -23 1601 158 40 52 chr3 190672908 190673236 -27363922 - Tigger2a DNA MER2_type -100 334 11 300 119 0 0 chr3 190673241 190673283 -27363875 - Tigger2a DNA MER2_type -392 42 1 371 333 21 21 chr3 190675828 190675972 -27361186 - MIR SINE MIR -70 192 49 494 283 68 42 chr3 190675996 190676303 -27360855 - MER102b DNA MER1_type 0 341 27 904 122 83 0 chr3 190676722 190676878 -27360280 + MER44D DNA MER2_type 27 465 -144 1088 91 0 26 chr3 190676878 190677032 -27360126 + AluSp/q SINE Alu 159 308 -5 22 0 0 0 chr3 190677484 190677506 -27359652 + AT_rich Low_complexity Low_complexity 1 22 0 1977 115 29 29 chr3 190677630 190677943 -27359215 - AluSq SINE Alu 0 313 1 361 282 13 32 chr3 190678995 190679151 -27358007 - MER103 DNA DNA -7 159 7 210 342 26 60 chr3 190680265 190680382 -27356776 - MIR SINE MIR -77 131 19 468 246 7 20 chr3 190680510 190680684 -27356474 - L1ME3A LINE L1 -5 6165 5992 979 257 54 4 chr3 190680685 190680946 -27356212 - LTR16B LTR ERVL -162 302 29 1464 242 130 13 chr3 190680964 190681037 -27356121 + L1ME3A LINE L1 5050 5113 -1057 2612 105 8 0 chr3 190681037 190681398 -27355760 - THE1B LTR MaLR 0 364 1 1464 242 130 13 chr3 190681398 190682024 -27355134 + L1ME3A LINE L1 5113 5825 -345 315 0 0 0 chr3 190682741 190682776 -27354382 + (TG)n Simple_repeat Simple_repeat 2 36 0 269 214 14 43 chr3 190683334 190683404 -27353754 + MARNA DNA Mariner 149 216 -370 2282 82 0 3 chr3 190683416 190683710 -27353448 - AluY SINE Alu -18 293 1 26 64 0 0 chr3 190683761 190683808 -27353350 + AT_rich Low_complexity Low_complexity 1 47 0 26 30 0 0 chr3 190684325 190684358 -27352800 + AT_rich Low_complexity Low_complexity 1 33 0 1979 253 102 17 chr3 190684482 190685171 -27351987 + HsTC2 DNA Tc2 1 747 -1151 468 192 24 7 chr3 190685166 190685271 -27351887 + HsTC2 DNA Tc2 1274 1553 -345 * 379 229 17 117 chr3 190685455 190685634 -27351524 - L1MC5 LINE L1 -67 7894 7734 219 266 0 0 chr3 190685649 190685713 -27351445 + CT-rich Low_complexity Low_complexity 2 65 0 699 204 92 0 chr3 190685713 190685865 -27351293 - AluJ SINE Alu 0 302 137 247 88 53 53 chr3 190685868 190685925 -27351233 - AluJ SINE Alu -168 134 78 1125 146 0 63 chr3 190685925 190686131 -27351027 - AluSq SINE Alu -120 193 1 5202 166 49 20 chr3 190686140 190687210 -27349948 - L1MC1 LINE L1 0 6333 5232 803 215 126 9 chr3 190687210 190687535 -27349623 + HsTC2 DNA Tc2 1533 1895 -3 649 332 48 14 chr3 190688196 190688485 -27348673 + LTR33 LTR ERVL 1 299 -222 965 176 64 0 chr3 190690265 190690453 -27346705 - L1PB4 LINE L1 -7 6149 5950 635 189 17 53 chr3 190690469 190690646 -27346512 + L1PB4 LINE L1 5767 5935 -234 203 339 40 0 chr3 190690731 190690855 -27346303 + MIR SINE MIR 117 245 -17 277 337 50 0 chr3 190691455 190691556 -27345602 + MER91C DNA MER1_type 14 119 -21 25 0 0 0 chr3 190691821 190691846 -27345312 + AT_rich Low_complexity Low_complexity 1 25 0 2078 186 44 7 chr3 190692003 190692416 -27344742 - MSTB1 LTR MaLR 0 432 5 2351 100 0 3 chr3 190692454 190692764 -27344394 - AluSx SINE Alu -3 309 1 187 302 23 35 chr3 190693962 190694048 -27343110 + MIR SINE MIR 16 100 -108 204 267 254 24 chr3 190694116 190694281 -27342877 - MIR SINE MIR -13 249 47 2028 193 67 5 chr3 190694354 190694790 -27342368 - MLT1C LTR MaLR 0 467 5 24 53 0 0 chr3 190695108 190695146 -27342012 + AT_rich Low_complexity Low_complexity 1 38 0 2956 162 41 0 chr3 190695351 190695893 -27341265 - L1MB2 LINE L1 -1 6170 5607 1735 178 72 54 chr3 190695893 190696298 -27340860 - LTR36 LTR ERV1 -1 610 199 * 1806 107 7 74 chr3 190696278 190696588 -27340570 - LTR36 LTR ERV1 -322 289 1 4011 251 57 10 chr3 190696588 190697100 -27340058 - L1MB2 LINE L1 -572 5611 5125 7447 29 19 0 chr3 190697100 190698058 -27339100 - L1PA4 LINE L1 -6 6149 5188 4011 251 57 10 chr3 190698058 190698976 -27338182 - L1MB2 LINE L1 -1058 5125 4085 2496 142 34 7 chr3 190699465 190699880 -27337278 + MSTA LTR MaLR 3 428 0 238 314 64 43 chr3 190699893 190700033 -27337125 - L3 LINE CR1 -115 1462 1320 190 372 21 21 chr3 190700052 190700146 -27337012 - L2 LINE L2 -21 3292 3199 330 302 184 19 chr3 190700388 190700600 -27336558 + MIR SINE MIR 13 259 -3 441 54 0 0 chr3 190700601 190700657 -27336501 + (ATG)n Simple_repeat Simple_repeat 1 56 0 965 321 35 49 chr3 190701060 190701711 -27335447 - L2 LINE L2 -7 3306 2656 183 333 0 15 chr3 190701846 190701912 -27335246 - L2 LINE L2 -8 3305 3241 2894 146 42 6 chr3 190702105 190702626 -27334532 + L1MA4A LINE L1 5762 6301 -2 2175 179 54 2 chr3 190702634 190703041 -27334117 - MSTA LTR MaLR 0 428 1 500 284 76 23 chr3 190705918 190706167 -27330991 - L1ME3A LINE L1 -219 5934 5669 2973 201 32 25 chr3 190706167 190706815 -27330343 + MER82 DNA MER2_type 1 653 0 500 284 76 23 chr3 190706815 190706829 -27330329 - L1ME3A LINE L1 -484 5669 5657 599 204 109 7 chr3 190706846 190706993 -27330165 - MER5A DNA MER1_type -22 167 6 418 289 96 24 chr3 190707066 190707362 -27329796 - L1ME3A LINE L1 -527 5618 5285 464 313 67 25 chr3 190707711 190708159 -27328999 - L1ME3A LINE L1 -4862 1257 791 238 171 0 0 chr3 190708176 190708217 -27328941 + Charlie5 DNA MER1_type 2544 2584 -28 582 179 17 8 chr3 190708219 190708336 -27328822 - MER52A LTR ERV1 0 1755 1638 41 48 0 0 chr3 190708426 190708488 -27328670 + AT_rich Low_complexity Low_complexity 1 62 0 13710 156 39 49 chr3 190709433 190712011 -27325147 + L1M1 LINE L1 12 2563 -5002 203 111 0 89 chr3 190712235 190712280 -27324878 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 288 0 0 0 chr3 190712303 190712335 -27324823 + (TG)n Simple_repeat Simple_repeat 2 33 0 23 54 0 0 chr3 190712609 190712646 -27324512 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr3 190712815 190712843 -27324315 + AT_rich Low_complexity Low_complexity 1 28 0 1218 313 132 10 chr3 190713593 190714185 -27322973 + L2 LINE L2 2041 2704 -610 4917 99 19 50 chr3 190714327 190715133 -27322025 - L1PA12 LINE L1 -8 6160 5380 2384 167 15 18 chr3 190715167 190715623 -27321535 + L1P LINE L1 4708 5162 -984 514 303 72 41 chr3 190715639 190716076 -27321082 + L2 LINE L2 2708 3172 -141 264 89 22 22 chr3 190716191 190716236 -27320922 + MER63 DNA MER1_type 1 45 -885 765 158 24 101 chr3 190716256 190716352 -27320806 + MER63 DNA MER1_type 866 939 -122 2173 150 31 3 chr3 190716352 190716706 -27320452 + THE1B LTR MaLR 1 364 0 765 158 24 101 chr3 190716706 190716818 -27320340 + MER63 DNA MER1_type 939 1058 -3 528 320 67 5 chr3 190716818 190717012 -27320146 + MIR SINE MIR 57 262 0 30 0 0 0 chr3 190717035 190717065 -27320093 + AT_rich Low_complexity Low_complexity 1 30 0 400 200 25 0 chr3 190717119 190717199 -27319959 + MIR SINE MIR 157 238 -24 206 339 39 39 chr3 190717509 190717636 -27319522 + MIR SINE MIR 13 139 -123 366 269 0 0 chr3 190718152 190718230 -27318928 + MER5A DNA MER1_type 14 91 -98 182 273 0 0 chr3 190718374 190718418 -27318740 + L2 LINE L2 3262 3305 -8 5541 146 18 14 chr3 190719651 190719780 -27317378 - Tigger1 DNA MER2_type -76 2342 2215 2187 110 0 22 chr3 190719780 190720098 -27317060 + AluSx SINE Alu 1 311 -1 5541 146 18 14 chr3 190720098 190720903 -27316255 - Tigger1 DNA MER2_type -203 2215 1404 302 241 115 0 chr3 190720903 190720990 -27316168 - L1M4 LINE L1 -1413 5544 5448 740 247 76 18 chr3 190720997 190721220 -27315938 - L1M4 LINE L1 -6612 247 12 348 269 0 0 chr3 190721232 190721310 -27315848 + MER119 DNA MER1_type 505 582 -1 180 288 151 0 chr3 190723791 190723864 -27313294 - L2 LINE L2 -4 3268 3185 469 310 28 0 chr3 190724519 190724664 -27312494 + MER20B DNA MER1_type 28 176 -607 229 231 56 120 chr3 190724699 190724807 -27312351 + MLT1L LTR MaLR 144 244 -371 216 0 0 0 chr3 190725244 190725268 -27311890 + (A)n Simple_repeat Simple_repeat 1 24 0 24 32 0 0 chr3 190725651 190725682 -27311476 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr3 190726357 190726385 -27310773 + AT_rich Low_complexity Low_complexity 1 28 0 2140 104 0 3 chr3 190726460 190726747 -27310411 + AluSc SINE Alu 1 286 -23 496 301 33 19 chr3 190726886 190727119 -27310039 - L1MEc LINE L1 -831 1745 1516 2679 20 0 0 chr3 190727233 190727534 -27309624 + AluYa5 SINE Alu 1 301 -10 231 250 0 0 chr3 190727565 190727633 -27309525 + (TA)n Simple_repeat Simple_repeat 2 69 0 310 271 84 31 chr3 190727634 190727859 -27309299 - L1MEc LINE L1 -4906 1299 1063 2031 115 20 7 chr3 190727866 190728161 -27308997 + AluSq SINE Alu 1 299 -14 547 294 110 42 chr3 190729229 190729766 -27307392 - L2 LINE L2 -11 3302 2722 51 96 0 0 chr3 190729769 190729925 -27307233 + AT_rich Low_complexity Low_complexity 1 156 0 2899 230 68 21 chr3 190730099 190730912 -27306246 - L1ME1 LINE L1 -4 6162 5312 1910 149 45 15 chr3 190731146 190731482 -27305676 - MER7A DNA MER2_type -2 344 1 1123 193 10 0 chr3 190731803 190732000 -27305158 - AluJb SINE Alu -24 288 90 223 115 48 96 chr3 190733065 190733169 -27303989 + (TTTAA)n Simple_repeat Simple_repeat 3 101 0 3342 169 42 2 chr3 190733436 190734015 -27303143 - MER6A DNA MER2_type 0 605 4 2652 20 3 0 chr3 190734154 190734453 -27302705 + AluY SINE Alu 1 300 -11 255 313 48 12 chr3 190734521 190734604 -27302554 - MIR SINE MIR -102 106 21 1457 236 27 11 chr3 190734798 190735163 -27301995 + L1M4 LINE L1 4830 5200 -946 3371 45 2 0 chr3 190735163 190735583 -27301575 - L1PA5 LINE L1 -867 5279 4859 7005 43 6 2 chr3 190735583 190736456 -27300702 + L1PA5 LINE L1 5273 6150 -4 1903 203 54 92 chr3 190738859 190739300 -27297858 - MLT1E3 LTR MaLR 0 624 214 2194 109 3 0 chr3 190739300 190739611 -27297547 + AluSx SINE Alu 1 312 0 1903 203 54 92 chr3 190739611 190739818 -27297340 - MLT1E3 LTR MaLR -410 214 1 1770 117 42 4 chr3 190741351 190741616 -27295542 - AluSg SINE Alu -35 275 1 2343 94 3 0 chr3 190741906 190742214 -27294944 - AluY SINE Alu -2 309 1 12283 35 5 0 chr3 190742334 190744590 -27292568 - L1PA4 LINE L1 -1 6154 3889 21 0 0 0 chr3 190746036 190746057 -27291101 + AT_rich Low_complexity Low_complexity 1 21 0 205 211 19 19 chr3 190746241 190746293 -27290865 + (CATA)n Simple_repeat Simple_repeat 3 54 0 1623 118 67 12 chr3 190747372 190747626 -27289532 + AluSq SINE Alu 1 268 -45 204 111 0 0 chr3 190747640 190747676 -27289482 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 343 267 130 27 chr3 190747928 190748074 -27289084 - MIR3 SINE MIR -5 203 43 393 297 55 7 chr3 190748117 190748262 -27288896 - MIR SINE MIR -91 171 20 26 74 0 0 chr3 190748659 190748713 -27288445 + AT_rich Low_complexity Low_complexity 1 54 0 2066 100 0 27 chr3 190749326 190749626 -27287532 - AluSc SINE Alu -13 296 5 431 301 133 12 chr3 190751178 190751434 -27285724 - LTR40b LTR ERVL -38 424 138 2051 122 0 3 chr3 190751956 190752244 -27284914 + AluSg SINE Alu 1 287 -23 186 360 27 0 chr3 190752703 190752778 -27284380 + MIR SINE MIR 64 140 -68 2410 77 0 3 chr3 190753009 190753319 -27283839 + AluY SINE Alu 1 309 -2 229 276 86 69 chr3 190754398 190754572 -27282586 - MER5B DNA MER1_type -1 177 1 231 248 146 51 chr3 190754425 190754562 -27282596 + MER5A DNA MER1_type 40 189 0 296 333 14 28 chr3 190755524 190755668 -27281490 + L2 LINE L2 1799 1940 -1374 673 226 11 17 chr3 190755938 190756115 -27281043 - MER96B DNA MER1_type? -241 176 1 210 407 50 14 chr3 190756347 190756487 -27280671 + L2 LINE L2 2557 2701 -613 255 390 51 0 chr3 190756510 190756628 -27280530 - L2 LINE L2 0 3313 3190 24 0 0 0 chr3 190756667 190756691 -27280467 + AT_rich Low_complexity Low_complexity 1 24 0 3704 162 20 4 chr3 190757098 190757791 -27279367 - L1MC1 LINE L1 -11 6322 5619 385 290 0 0 chr3 190758018 190758118 -27279040 - MIR SINE MIR -138 124 25 414 301 52 35 chr3 190758119 190758292 -27278866 - MIR SINE MIR -50 212 37 787 246 49 20 chr3 190758782 190758985 -27278173 - MIR SINE MIR -15 247 39 798 247 16 0 chr3 190761136 190761322 -27275836 - MER5A DNA MER1_type 0 189 1 989 217 79 0 chr3 190761417 190761620 -27275538 - MER58A DNA MER1_type -5 219 1 241 299 196 0 chr3 190762017 190762114 -27275044 - L2 LINE L2 -2 3270 3155 2508 163 22 7 chr3 190763154 190763608 -27273550 - LOR1b LTR ERV1 0 461 1 701 191 74 11 chr3 190763894 190764161 -27272997 - MLT1A2 LTR MaLR -13 361 1 451 321 60 0 chr3 190764804 190764972 -27272186 - MIR SINE MIR -12 250 73 1216 169 9 24 chr3 190765091 190765304 -27271854 - AluJb SINE Alu -9 303 94 6864 176 63 12 chr3 190765305 190766564 -27270594 - MER52A LTR ERV1 -7 1748 425 677 227 20 20 chr3 190766579 190766729 -27270429 - MER52A LTR ERV1 -1605 150 1 632 155 0 10 chr3 190766732 190766835 -27270323 - AluJb SINE Alu -210 102 1 21 0 0 0 chr3 190767490 190767511 -27269647 + AT_rich Low_complexity Low_complexity 1 21 0 190 421 63 8 chr3 190767851 190767977 -27269181 + MIR3 SINE MIR 30 162 -46 180 0 0 0 chr3 190769561 190769581 -27267577 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 23 33 0 0 chr3 190771043 190771073 -27266085 + AT_rich Low_complexity Low_complexity 1 30 0 304 297 47 39 chr3 190771707 190771835 -27265323 - L2 LINE L2 -7 3265 3137 21 36 0 0 chr3 190773338 190773366 -27263792 + AT_rich Low_complexity Low_complexity 1 28 0 1682 196 38 88 chr3 190773608 190773872 -27263286 + MLT1D LTR MaLR 1 226 -279 17786 138 10 3 chr3 190773872 190776948 -27260210 + L1PA10 LINE L1 2382 5493 -675 1691 128 0 0 chr3 190776948 190777182 -27259976 + AluSg/x SINE Alu 79 312 0 17786 138 10 3 chr3 190777182 190777856 -27259302 + L1PA10 LINE L1 5493 6161 -7 1682 196 38 88 chr3 190777856 190778123 -27259035 + MLT1D LTR MaLR 226 505 0 21 36 0 0 chr3 190778424 190778452 -27258706 + AT_rich Low_complexity Low_complexity 1 28 0 273 246 0 0 chr3 190779213 190779270 -27257888 + MER81 DNA DNA 38 94 -20 187 246 46 31 chr3 190779387 190779452 -27257706 + L2 LINE L2 2432 2497 -817 213 39 0 0 chr3 190779933 190779959 -27257199 + (TTC)n Simple_repeat Simple_repeat 2 27 0 1982 136 3 13 chr3 190779961 190780263 -27256895 - AluSg SINE Alu -11 299 1 538 312 112 31 chr3 190780267 190780748 -27256410 - L1M4 LINE L1 -2580 3566 3047 1319 77 60 6 chr3 190781126 190781308 -27255850 - AluSg SINE Alu -118 192 1 2325 97 3 3 chr3 190781598 190781908 -27255250 - AluY SINE Alu -1 310 1 2281 122 36 11 chr3 190782028 190782494 -27254664 - L1PA4 LINE L1 -1 6154 5677 1561 218 36 8 chr3 190782685 190783047 -27254111 - MLT1A2 LTR MaLR 0 374 3 2185 102 7 3 chr3 190783418 190783723 -27253435 + AluY SINE Alu 3 308 -3 30 0 0 0 chr3 190783998 190784028 -27253130 + GC_rich Low_complexity Low_complexity 1 30 0 353 253 34 34 chr3 190784230 190784449 -27252709 + G-rich Low_complexity Low_complexity 1 219 0 983 248 24 13 chr3 190784766 190785064 -27252094 + L1M4 LINE L1 3375 3675 -2471 252 274 0 0 chr3 190785876 190785927 -27251231 + polypyrimidine Low_complexity Low_complexity 3 53 0 586 292 58 22 chr3 190786048 190786274 -27250884 - MIR SINE MIR -27 235 2 2327 100 7 3 chr3 190786534 190786843 -27250315 - AluSx SINE Alu -2 310 1 289 350 38 22 chr3 190787102 190787416 -27249742 - L1M4 LINE L1 -1924 4222 3904 22 56 0 0 chr3 190787441 190787477 -27249681 + AT_rich Low_complexity Low_complexity 1 36 0 2415 84 0 0 chr3 190787490 190787789 -27249369 + AluSx SINE Alu 1 299 -13 232 221 33 90 chr3 190787825 190787947 -27249211 - L1M4 LINE L1 -2328 3818 3704 204 125 0 0 chr3 190787960 190787992 -27249166 + (TG)n Simple_repeat Simple_repeat 1 32 0 538 281 129 74 chr3 190788009 190788078 -27249080 - L1M4 LINE L1 -2519 3627 3563 2428 68 7 3 chr3 190788078 190788385 -27248773 - AluY SINE Alu -3 308 1 538 281 129 74 chr3 190788385 190788870 -27248288 - L1M4 LINE L1 -2583 3563 3047 1407 159 116 7 chr3 190789203 190789479 -27247679 - AluSg SINE Alu -2 308 3 1561 218 36 8 chr3 190789850 190790212 -27246946 + MLT1A2 LTR MaLR 3 374 0 557 191 122 23 chr3 190790573 190790704 -27246454 - FRAM SINE Alu -10 166 23 348 309 110 0 chr3 190790936 190791072 -27246086 - MIR SINE MIR -48 214 64 1874 138 35 43 chr3 190791090 190791466 -27245692 + THE1C LTR MaLR 3 375 0 224 231 43 60 chr3 190792854 190792971 -27244187 + L2 LINE L2 2859 2973 -299 239 0 32 0 chr3 190793053 190793084 -27244074 + (CAAAA)n Simple_repeat Simple_repeat 5 36 0 2116 97 0 45 chr3 190793598 190793909 -27243249 - AluSg SINE Alu -13 297 1 2203 108 7 0 chr3 190795810 190796105 -27241053 - AluSq SINE Alu -16 297 1 21 0 0 0 chr3 190797493 190797514 -27239644 + AT_rich Low_complexity Low_complexity 1 21 0 393 115 0 167 chr3 190797682 190797725 -27239433 + MADE1 DNA Mariner 1 21 -59 2078 52 26 0 chr3 190797725 190797993 -27239165 - L1PA4 LINE L1 -3 6152 5878 393 115 0 167 chr3 190797993 190798045 -27239113 + MADE1 DNA Mariner 21 80 0 2413 67 20 0 chr3 190798262 190798559 -27238599 - AluY SINE Alu -8 303 1 2224 90 21 0 chr3 190798782 190799071 -27238087 - AluY SINE Alu -16 295 1 1644 179 39 18 chr3 190799919 190800254 -27236904 - MER2 DNA MER2_type -2 342 1 486 312 63 23 chr3 190800519 190800740 -27236418 - MIR SINE MIR -2 260 31 2451 70 3 0 chr3 190800747 190801045 -27236113 - AluY SINE Alu -11 300 2 2492 90 0 0 chr3 190801900 190802210 -27234948 + AluSg SINE Alu 1 310 0 191 114 23 0 chr3 190802423 190802467 -27234691 + A-rich Low_complexity Low_complexity 3 47 0 194 306 0 0 chr3 190802554 190802603 -27234555 - MIR SINE MIR -59 149 101 2064 135 30 0 chr3 190802958 190803255 -27233903 + AluSc SINE Alu 2 307 -2 297 89 0 0 chr3 190803720 190803765 -27233393 + (CA)n Simple_repeat Simple_repeat 2 46 0 273 29 0 0 chr3 190803766 190803800 -27233358 + (GA)n Simple_repeat Simple_repeat 1 34 0 538 281 0 8 chr3 190805335 190805463 -27231695 - L2 LINE L2 -2 3311 3185 440 259 37 0 chr3 190805530 190805665 -27231493 + MER91C DNA MER1_type 1 140 0 421 311 105 10 chr3 190806937 190807146 -27230012 + MIR SINE MIR 2 230 -32 27 0 0 0 chr3 190807641 190807668 -27229490 + AT_rich Low_complexity Low_complexity 1 27 0 184 109 22 22 chr3 190808189 190808235 -27228923 + T-rich Low_complexity Low_complexity 6 51 0 31 58 0 0 chr3 190808392 190808444 -27228714 + AT_rich Low_complexity Low_complexity 1 52 0 2259 62 10 30 chr3 190809189 190809494 -27227664 + AluY SINE Alu 11 309 -2 191 366 46 53 chr3 190809831 190809962 -27227196 - L2 LINE L2 -118 3154 3025 237 282 51 39 chr3 190810571 190810649 -27226509 - L2 LINE L2 -36 3277 3199 1658 186 21 21 chr3 190813744 190814125 -27223033 - L1MB8 LINE L1 -3 6175 5795 359 328 160 30 chr3 190814145 190814413 -27222745 - LTR16A LTR ERVL 0 450 148 191 236 55 0 chr3 190817035 190817090 -27220068 - L2 LINE L2 -1 3271 3214 180 0 0 0 chr3 190817093 190817113 -27220045 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 10499 92 7 7 chr3 190817115 190819381 -27217777 - L1PA7 LINE L1 -11 6143 3875 4953 80 1 1 chr3 190819382 190820059 -27217099 - L1PA7 LINE L1 -3978 2168 1492 21 57 0 0 chr3 190821113 190821148 -27216010 + AT_rich Low_complexity Low_complexity 1 35 0 2541 106 16 0 chr3 190821196 190821565 -27215593 - THE1C LTR MaLR 0 375 1 25 0 0 0 chr3 190822232 190822257 -27214901 + AT_rich Low_complexity Low_complexity 1 25 0 304 256 50 58 chr3 190822410 190822531 -27214627 - MER5B DNA MER1_type -55 123 4 358 242 88 0 chr3 190823502 190823593 -27213565 - Tigger7 DNA MER2_type -631 102 4 23 0 0 0 chr3 190823615 190823638 -27213520 + AT_rich Low_complexity Low_complexity 1 23 0 1083 199 9 0 chr3 190823645 190823866 -27213292 - L1PA16 LINE L1 -9 6157 5935 406 57 0 0 chr3 190823867 190823920 -27213238 - MADE1 DNA Mariner 0 80 28 267 78 59 39 chr3 190823920 190823971 -27213187 - L1PB3 LINE L1 -213 5941 5890 * 1222 213 61 0 chr3 190823963 190824240 -27212918 - L1P LINE L1 -1193 4953 4660 2172 101 7 7 chr3 190824787 190825095 -27212063 + AluY SINE Alu 1 308 -3 200 200 71 0 chr3 190825624 190825694 -27211464 + (TTATA)n Simple_repeat Simple_repeat 3 77 0 405 0 0 0 chr3 190826194 190826239 -27210919 + (TA)n Simple_repeat Simple_repeat 2 46 0 253 163 41 20 chr3 190826491 190826567 -27210591 + AluJ/FRAM SINE Alu 231 307 0 1353 207 69 17 chr3 190826961 190827309 -27209849 - MLT1B LTR MaLR -2 388 23 285 236 100 9 chr3 190827687 190827797 -27209361 - Charlie8 DNA MER1_type -2255 162 43 220 286 0 0 chr3 190828536 190828606 -27208552 + T-rich Low_complexity Low_complexity 1 70 0 1618 108 65 0 chr3 190829104 190829222 -27207936 - AluSx SINE Alu -53 259 150 193 37 37 0 chr3 190829222 190829249 -27207909 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 1618 108 65 0 chr3 190829249 190829362 -27207796 - AluSx SINE Alu -162 150 13 430 259 46 9 chr3 190829386 190829494 -27207664 - L2 LINE L2 -5 3308 3197 1388 199 128 12 chr3 190829705 190830032 -27207126 - MLT1A1 LTR MaLR 0 365 1 2102 131 7 0 chr3 190830639 190830930 -27206228 - AluSq SINE Alu -17 296 4 24 0 0 0 chr3 190831855 190831879 -27205279 + AT_rich Low_complexity Low_complexity 1 24 0 380 295 102 93 chr3 190832591 190833079 -27204079 - L1M2 LINE L1 -5587 1262 755 1899 178 54 5 chr3 190833481 190833851 -27203307 - MLT1B LTR MaLR -2 388 1 24 0 0 0 chr3 190834559 190834583 -27202575 + AT_rich Low_complexity Low_complexity 1 24 0 2102 131 7 0 chr3 190835508 190835799 -27201359 + AluSq SINE Alu 4 296 -17 1388 199 128 12 chr3 190836406 190836733 -27200425 + MLT1A1 LTR MaLR 1 365 0 430 259 46 9 chr3 190836944 190837052 -27200106 + L2 LINE L2 3197 3308 -5 1693 160 65 0 chr3 190837076 190837185 -27199973 + AluSx SINE Alu 13 113 -199 199 0 65 0 chr3 190837185 190837216 -27199942 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1693 160 65 0 chr3 190837216 190837381 -27199777 + AluSx SINE Alu 113 305 -7 438 143 0 0 chr3 190837391 190837468 -27199690 + (GGAA)n Simple_repeat Simple_repeat 4 80 0 223 326 23 0 chr3 190838556 190838642 -27198516 - L2 LINE L2 -1 3271 3184 2384 95 0 16 chr3 190840119 190840434 -27196724 - AluSp SINE Alu -3 310 1 2178 213 31 6 chr3 190840553 190841064 -27196094 - L1M4 LINE L1 -405 5779 5256 898 191 50 72 chr3 190841071 190841349 -27195809 + MLT1B LTR MaLR 1 272 -118 2609 165 22 12 chr3 190841373 190841863 -27195295 - L1PB4 LINE L1 -13 6143 5649 2795 194 56 36 chr3 190841875 190842436 -27194722 - L1PB4 LINE L1 -748 5398 4817 1564 94 5 27 chr3 190842436 190842660 -27194498 - AluSg/x SINE Alu 0 312 94 2795 194 56 36 chr3 190842660 190842846 -27194312 - L1PB4 LINE L1 -1329 4817 4636 332 153 17 0 chr3 190842847 190842906 -27194252 + MLT1B LTR MaLR 285 344 -46 1545 255 49 4 chr3 190842927 190843397 -27193761 - L1M4 LINE L1 -914 5232 4742 2497 210 35 68 chr3 190843480 190844024 -27193134 - L1M4 LINE L1 -1409 4737 4177 2257 117 0 0 chr3 190844024 190844322 -27192836 + AluSx SINE Alu 1 298 -14 2497 210 35 68 chr3 190844322 190844428 -27192730 - L1M4 LINE L1 -1969 4177 4069 2165 133 48 20 chr3 190844428 190844782 -27192376 + THE1B LTR MaLR 1 364 0 10573 106 36 5 chr3 190844782 190846314 -27190844 + THE1B-int LTR MaLR 1 1580 0 2281 114 49 20 chr3 190846316 190846666 -27190492 + THE1B LTR MaLR 3 362 -2 2497 210 35 68 chr3 190846666 190846943 -27190215 - L1M4 LINE L1 -2077 4069 3835 306 293 50 40 chr3 190847285 190847483 -27189675 - L2 LINE L2 0 3313 3114 10403 72 11 1 chr3 190847625 190849788 -27187370 - L1PA6 LINE L1 -6 6148 3968 21 36 0 0 chr3 190849978 190850006 -27187152 + AT_rich Low_complexity Low_complexity 1 28 0 352 335 51 5 chr3 190850067 190850264 -27186894 + MIR SINE MIR 51 256 -6 1366 296 37 5 chr3 190851273 190851678 -27185480 - LTR16A LTR ERVL -7 443 26 210 300 191 9 chr3 190851726 190851836 -27185322 - MIR SINE MIR -113 149 20 214 387 42 0 chr3 190852070 190852189 -27184969 - MIR SINE MIR -109 153 30 180 0 0 0 chr3 190853006 190853026 -27184132 + (TG)n Simple_repeat Simple_repeat 1 20 0 307 194 21 0 chr3 190853939 190854032 -27183126 + (TG)n Simple_repeat Simple_repeat 2 96 0 2409 167 36 0 chr3 190854890 190855303 -27181855 + MSTA LTR MaLR 1 428 0 8459 176 46 13 chr3 190855305 190856903 -27180255 + MSTA-int LTR MaLR 2 1651 0 2223 169 39 5 chr3 190856903 190857317 -27179841 + MSTA LTR MaLR 1 428 0 6343 149 40 23 chr3 190857387 190858309 -27178849 + Tigger3b DNA MER2_type 20 968 -2060 1280 99 139 0 chr3 190858309 190858510 -27178648 + MER30 DNA MER1_type 1 229 -1 6343 149 40 23 chr3 190858510 190858761 -27178397 + Tigger3b DNA MER2_type 968 1213 -18 848 230 61 0 chr3 190858790 190858955 -27178203 - FAM SINE Alu 0 175 1 210 30 61 0 chr3 190859230 190859263 -27177895 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2167 96 4 0 chr3 190859263 190859543 -27177615 - AluY SINE Alu -1 313 1 1168 146 4 110 chr3 190860313 190860567 -27176591 - MLT1B LTR MaLR 0 390 164 846 163 0 27 chr3 190860579 190860726 -27176432 - FRAM SINE Alu -30 146 4 234 0 0 0 chr3 190860968 190860994 -27176164 + (T)n Simple_repeat Simple_repeat 1 26 0 429 177 129 65 chr3 190861038 190861162 -27175996 - MLT1B LTR MaLR -258 132 1 283 266 32 11 chr3 190861305 190861399 -27175759 + CT-rich Low_complexity Low_complexity 2 97 0 363 44 0 0 chr3 190861523 190861568 -27175590 + (TG)n Simple_repeat Simple_repeat 2 46 0 268 165 87 0 chr3 190861611 190861714 -27175444 + (TA)n Simple_repeat Simple_repeat 2 113 0 263 305 62 62 chr3 190861741 190861869 -27175289 - MIR SINE MIR -124 138 11 1352 236 0 7 chr3 190862456 190862749 -27174409 + AluJo SINE Alu 1 291 -21 21 0 0 0 chr3 190862749 190862770 -27174388 + AT_rich Low_complexity Low_complexity 1 21 0 1720 163 39 23 chr3 190864195 190864501 -27172657 - AluJb SINE Alu -1 311 1 27 73 0 0 chr3 190864501 190864556 -27172602 + AT_rich Low_complexity Low_complexity 1 55 0 371 322 40 7 chr3 190864686 190864835 -27172323 - L3 LINE CR1 -86 1491 1338 2117 253 105 78 chr3 190864915 190866094 -27171064 + MER69B DNA AcHobo 1 1211 -15 309 304 81 6 chr3 190867472 190867633 -27169525 - Charlie8 DNA MER1_type -2244 173 1 220 286 0 0 chr3 190868321 190868391 -27168767 + T-rich Low_complexity Low_complexity 1 70 0 1411 90 0 0 chr3 190868888 190869065 -27168093 - AluSc SINE Alu -51 258 82 25 51 0 0 chr3 190869065 190869104 -27168054 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr3 190869366 190869395 -27167763 + AT_rich Low_complexity Low_complexity 1 29 0 2534 156 11 113 chr3 190870229 190870787 -27166371 - MLT2B2 LTR ERVL -14 501 1 2297 57 0 3 chr3 190870883 190871213 -27165945 + AluY SINE Alu 1 329 0 468 232 237 14 chr3 190871418 190871625 -27165533 + MIR SINE MIR 2 254 -8 313 241 0 0 chr3 190871633 190871691 -27165467 + L2 LINE L2 3215 3272 0 373 320 114 17 chr3 190871691 190871866 -27165292 + MIR SINE MIR 21 212 -50 1433 212 83 68 chr3 190872356 190872852 -27164306 - MLT1D LTR MaLR 0 505 3 1289 157 9 5 chr3 190873041 190873251 -27163907 + AluJo SINE Alu 3 213 -99 252 0 0 0 chr3 190873305 190873333 -27163825 + (CACAA)n Simple_repeat Simple_repeat 5 32 0 375 251 114 92 chr3 190874130 190874228 -27162930 - MIR SINE MIR -3 259 165 21482 26 4 0 chr3 190874228 190877604 -27159554 - L1PA3 LINE L1 0 6155 2795 2248 75 0 17 chr3 190877611 190877904 -27159254 - AluY SINE Alu -23 288 1 375 251 114 92 chr3 190877904 190878024 -27159134 - MIR SINE MIR -102 160 28 2183 270 32 14 chr3 190878432 190879244 -27157914 + L1M4 LINE L1 3375 4201 -1945 4465 216 31 39 chr3 190879254 190881596 -27155562 + L1MB2 LINE L1 3797 6120 -51 2107 69 0 29 chr3 190881596 190881872 -27155286 + AluY SINE Alu 39 306 -5 4465 216 31 39 chr3 190881872 190881922 -27155236 + L1MB2 LINE L1 6120 6169 -2 10008 192 7 21 chr3 190882085 190882650 -27154508 + L1P5 LINE L1 2937 3508 -2643 2238 117 0 0 chr3 190882650 190882957 -27154201 + AluSx SINE Alu 1 307 -5 10008 192 7 21 chr3 190882957 190885291 -27151867 + L1P5 LINE L1 3508 5793 -358 223 159 0 32 chr3 190885293 190885356 -27151802 + (TA)n Simple_repeat Simple_repeat 2 62 0 270 219 0 0 chr3 190886176 190886240 -27150918 + A-rich Low_complexity Low_complexity 1 64 0 2162 114 3 0 chr3 190887190 190887488 -27149670 - AluSp SINE Alu -14 299 1 219 69 0 0 chr3 190887919 190887948 -27149210 + (TG)n Simple_repeat Simple_repeat 2 30 0 1820 186 54 15 chr3 190888117 190888509 -27148649 - L1MA6 LINE L1 -6 6294 5888 4455 170 71 23 chr3 190888511 190890031 -27147127 - L1MA6 LINE L1 -479 5821 4224 1105 327 56 47 chr3 190890973 190891567 -27145591 - L1M2c LINE L1 -6188 601 3 212 331 186 34 chr3 190891930 190892253 -27144905 - L2 LINE L2 -548 2766 2395 223 305 178 0 chr3 190892747 190892865 -27144293 - MIR SINE MIR -25 237 99 210 283 0 0 chr3 190893133 190893186 -27143972 + T-rich Low_complexity Low_complexity 1 53 0 4110 140 18 75 chr3 190893853 190894595 -27142563 - Tigger3(Golem) DNA MER2_type 0 3028 2338 2268 106 0 0 chr3 190894595 190894898 -27142260 + AluSg SINE Alu 3 305 -5 4110 140 18 75 chr3 190894898 190894992 -27142166 - Tigger3(Golem) DNA MER2_type -690 2338 2240 2405 156 25 25 chr3 190894992 190895472 -27141686 - L1M1 LINE L1 -4368 3197 2718 13482 192 31 13 chr3 190895481 190898222 -27138936 + L1MA4 LINE L1 2200 5037 -1263 2134 93 0 45 chr3 190898222 190898535 -27138623 + AluSc SINE Alu 1 299 -10 13482 192 31 13 chr3 190898535 190899813 -27137345 + L1MA4 LINE L1 5037 6291 -9 22 56 0 0 chr3 190899813 190899849 -27137309 + AT_rich Low_complexity Low_complexity 1 36 0 1189 161 32 132 chr3 190899869 190899965 -27137193 - Tigger3(Golem) DNA MER2_type -2721 308 204 2364 90 3 3 chr3 190899965 190900277 -27136881 - AluSq SINE Alu -1 312 1 1189 161 32 132 chr3 190900277 190900521 -27136637 - Tigger3(Golem) DNA MER2_type -2825 204 2 236 284 15 15 chr3 190900793 190900860 -27136298 - L2 LINE L2 -1 3312 3246 405 0 0 0 chr3 190900914 190900959 -27136199 + (CA)n Simple_repeat Simple_repeat 2 46 0 272 159 0 16 chr3 190900971 190901034 -27136124 + (TA)n Simple_repeat Simple_repeat 2 63 0 344 269 0 0 chr3 190901034 190901138 -27136020 + L1MC4 LINE L1 6600 6703 -1339 1653 190 4 0 chr3 190901163 190901442 -27135716 - AluJo SINE Alu -30 282 3 3544 183 52 3 chr3 190901464 190902163 -27134995 + MER44D DNA MER2_type 1 605 0 207 159 182 0 chr3 190902934 190902978 -27134180 - MIR3 SINE MIR -51 157 106 331 209 45 40 chr3 190903191 190903368 -27133790 + (TA)n Simple_repeat Simple_repeat 2 179 0 289 306 0 82 chr3 190903590 190903737 -27133421 - MIR SINE MIR -66 196 62 244 273 0 0 chr3 190903794 190903849 -27133309 + GA-rich Low_complexity Low_complexity 6 60 0 326 318 8 38 chr3 190903894 190904026 -27133132 - MIR SINE MIR -60 202 75 279 335 48 48 chr3 190912528 190912716 -27124442 + L2 LINE L2 3093 3280 -33 325 281 22 0 chr3 190913513 190913602 -27123556 + MIR SINE MIR 162 252 -10 203 284 75 0 chr3 190914467 190914534 -27122624 - MIR SINE MIR -83 179 108 190 277 50 40 chr3 190914539 190914640 -27122518 + L3b LINE CR1 1388 1489 -94 1849 102 3 35 chr3 190914884 190915168 -27121990 + AluSq SINE Alu 34 308 -5 279 179 0 0 chr3 190915197 190915264 -27121894 + (TG)n Simple_repeat Simple_repeat 2 68 0 24 53 0 0 chr3 190915702 190915740 -27121418 + AT_rich Low_complexity Low_complexity 1 38 0 198 297 78 16 chr3 190915768 190915832 -27121326 - MIR SINE MIR -187 75 8 28 29 0 0 chr3 190915934 190915969 -27121189 + AT_rich Low_complexity Low_complexity 1 35 0 1938 145 0 0 chr3 190916754 190917062 -27120096 + AluSx SINE Alu 1 308 0 509 288 73 11 chr3 190917377 190917554 -27119604 - MIR SINE MIR -39 223 36 257 267 43 52 chr3 190917690 190917806 -27119352 - L2 LINE L2 -1 3312 3198 294 29 0 0 chr3 190917859 190917894 -27119264 + (CA)n Simple_repeat Simple_repeat 2 36 0 225 83 0 0 chr3 190918320 190918356 -27118802 + (TC)n Simple_repeat Simple_repeat 2 37 0 1943 136 0 0 chr3 190918367 190918690 -27118468 - AluSg SINE Alu 0 323 1 194 261 29 43 chr3 190918838 190918907 -27118251 - MIR SINE MIR -24 238 171 210 351 101 7 chr3 190918976 190919124 -27118034 - L2 LINE L2 -214 3058 2897 1853 149 10 0 chr3 190919985 190920280 -27116878 + AluJo SINE Alu 15 312 0 24 0 0 0 chr3 190921053 190921077 -27116081 + AT_rich Low_complexity Low_complexity 1 24 0 1336 229 16 57 chr3 190921939 190922324 -27114834 - MLT1A2 LTR MaLR -2 372 4 278 328 31 99 chr3 190922798 190923121 -27114037 + L3 LINE CR1 1242 1542 -35 1826 291 114 41 chr3 190924809 190925862 -27111296 + L2 LINE L2 1711 3036 -277 1265 265 32 40 chr3 190925869 190926322 -27110836 - MLT1C LTR MaLR 0 467 12 746 336 25 0 chr3 190926430 190926704 -27110454 - MER46C DNA MER2_type -4 334 54 501 187 47 73 chr3 190926740 190926890 -27110268 + L2 LINE L2 3154 3299 -14 239 75 100 0 chr3 190927508 190927548 -27109610 - MLT2A2 LTR ERVL -8 445 402 218 105 26 0 chr3 190927548 190927586 -27109572 + (TG)n Simple_repeat Simple_repeat 2 40 0 231 195 26 52 chr3 190927609 190927686 -27109472 + L1MC3 LINE L1 6572 6646 -1139 * 237 333 0 0 chr3 190927642 190927732 -27109426 - L1MC4 LINE L1 -1339 6703 6614 * 290 300 0 0 chr3 190927656 190927746 -27109412 + L1MC4 LINE L1 6614 6703 -1339 254 216 68 45 chr3 190927756 190927844 -27109314 - L1MC4 LINE L1 -1339 6703 6614 260 322 0 0 chr3 190927868 190927958 -27109200 + L1MC4 LINE L1 6614 6703 -1339 327 311 0 0 chr3 190927958 190928048 -27109110 + L1MC4 LINE L1 6614 6703 -1339 2921 101 0 2 chr3 190928054 190928459 -27108699 - MLT2A1 LTR ERVL -40 404 1 10075 74 2 9 chr3 190928459 190929763 -27107395 - HERVL-A1 LTR ERVL 0 5654 4360 8278 79 14 2 chr3 190929764 190930861 -27106297 - HERVL-A1 LTR ERVL -4544 1110 1 844 80 33 66 chr3 190930861 190931012 -27106146 - MLT2A1 LTR ERVL 0 444 299 511 297 50 11 chr3 190931014 190931321 -27105837 - AluSq SINE Alu 0 337 20 327 303 28 42 chr3 190931440 190931582 -27105576 + L2 LINE L2 3112 3251 -62 1668 186 3 7 chr3 190931618 190931908 -27105250 - AluJo SINE Alu -23 289 1 2470 59 0 3 chr3 190932900 190933207 -27103951 + MLT2A1 LTR ERVL 1 306 -138 2345 91 3 0 chr3 190933208 190933516 -27103642 + AluY SINE Alu 1 309 -2 190 331 123 8 chr3 190933599 190933729 -27103429 + L3b LINE CR1 1112 1256 -327 25 0 0 0 chr3 190934364 190934389 -27102769 + AT_rich Low_complexity Low_complexity 1 25 0 383 241 251 15 chr3 190934623 190934822 -27102336 + MIR SINE MIR 7 252 -10 8911 164 28 12 chr3 190935374 190937272 -27099886 + L1PA12 LINE L1 207 2657 -4924 1235 87 5 34 chr3 190937405 190937613 -27099545 - HERVL-A1 LTR ERVL -5452 202 1 844 80 33 66 chr3 190937613 190937764 -27099394 - MLT2A1 LTR ERVL 0 444 299 468 0 0 0 chr3 190937768 190937820 -27099338 + (T)n Simple_repeat Simple_repeat 1 52 0 26 30 0 0 chr3 190937825 190937858 -27099300 + GC_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr3 190939279 190939301 -27097857 + AT_rich Low_complexity Low_complexity 1 22 0 602 168 32 65 chr3 190940063 190940218 -27096940 - MER5B DNA MER1_type -1 177 28 180 135 0 0 chr3 190940576 190940613 -27096545 + (T)n Simple_repeat Simple_repeat 1 37 0 255 203 0 0 chr3 190941043 190941102 -27096056 + (CA)n Simple_repeat Simple_repeat 2 60 0 22 0 0 0 chr3 190941139 190941161 -27095997 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr3 190941301 190941325 -27095833 + AT_rich Low_complexity Low_complexity 1 24 0 1410 135 28 4 chr3 190941480 190941762 -27095396 - AluSx SINE Alu 0 314 27 1639 192 23 19 chr3 190942313 190942741 -27094417 - L1PA14 LINE L1 0 6161 5732 915 232 12 31 chr3 190943405 190943724 -27093434 + AluSq SINE Alu 1 313 0 12464 174 25 23 chr3 190943729 190946928 -27090230 + L1MA1 LINE L1 2580 5790 -512 2848 6 0 0 chr3 190946928 190947239 -27089919 + AluYa5 SINE Alu 1 311 0 12464 174 25 23 chr3 190947239 190947749 -27089409 + L1MA1 LINE L1 5790 6298 -4 29 0 0 0 chr3 190947753 190947782 -27089376 + AT_rich Low_complexity Low_complexity 1 29 0 540 249 58 37 chr3 190947916 190948105 -27089053 + L1ME3A LINE L1 5963 6155 -15 24 32 0 0 chr3 190948303 190948334 -27088824 + AT_rich Low_complexity Low_complexity 1 31 0 2438 156 17 2 chr3 190948405 190948827 -27088331 + MSTA LTR MaLR 1 428 0 29 47 0 0 chr3 190949055 190949098 -27088060 + AT_rich Low_complexity Low_complexity 1 43 0 380 326 74 21 chr3 190949436 190949626 -27087532 + L1ME LINE L1 5405 5604 -517 248 212 200 0 chr3 190951153 190951238 -27085920 - MER5A DNA MER1_type -77 112 11 217 323 85 39 chr3 190951355 190951485 -27085673 + MIR SINE MIR 101 236 -26 211 329 14 0 chr3 190951640 190951713 -27085445 + L3 LINE CR1 955 1028 -549 227 229 0 0 chr3 190953049 190953198 -27083960 + (TA)n Simple_repeat Simple_repeat 1 149 0 30 0 0 0 chr3 190954171 190954201 -27082957 + AT_rich Low_complexity Low_complexity 1 30 0 206 329 81 40 chr3 190954925 190955074 -27082084 + MER5B DNA MER1_type 24 178 0 1449 235 65 77 chr3 190955432 190955942 -27081216 + MLT1F1 LTR MaLR 64 567 0 384 357 39 28 chr3 190956270 190956452 -27080706 - MIR3 SINE MIR -1 207 24 36 23 0 0 chr3 190957070 190957113 -27080045 + AT_rich Low_complexity Low_complexity 1 43 0 198 0 0 0 chr3 190957119 190957141 -27080017 + (T)n Simple_repeat Simple_repeat 1 22 0 1997 119 0 20 chr3 190958203 190958498 -27078660 + AluSq SINE Alu 1 289 -24 199 330 85 11 chr3 190958498 190958592 -27078566 - MIR SINE MIR -12 250 150 602 322 88 13 chr3 190958693 190958932 -27078226 + MIR SINE MIR 6 262 0 191 384 0 0 chr3 190959810 190959896 -27077262 + MIR SINE MIR 57 142 -120 638 314 47 3 chr3 190960439 190960738 -27076420 + L1MEc LINE L1 34 345 -6051 429 237 101 35 chr3 190962060 190962229 -27074929 + HsTC2 DNA Tc2 1 1898 0 245 291 179 31 chr3 190962629 190962825 -27074333 + MIR SINE MIR 28 252 -10 21 0 0 0 chr3 190963059 190963080 -27074078 + AT_rich Low_complexity Low_complexity 1 21 0 2239 113 0 7 chr3 190963149 190963458 -27073700 - AluSx SINE Alu -5 307 1 191 333 101 29 chr3 190963508 190963646 -27073512 + MIR SINE MIR 3 150 -112 192 381 106 6 chr3 190964413 190964573 -27072585 + MIR SINE MIR 6 181 -81 21 0 0 0 chr3 190964679 190964700 -27072458 + AT_rich Low_complexity Low_complexity 1 21 0 5958 124 20 3 chr3 190964897 190965967 -27071191 + L1PB2 LINE L1 5068 6150 -1 1037 272 153 28 chr3 190967500 190967970 -27069188 - MLT1H LTR MaLR -8 541 13 13445 170 20 3 chr3 190967997 190970360 -27066798 - Tigger1 DNA MER2_type -16 2402 1 2344 96 0 13 chr3 190970615 190970929 -27066229 + AluY SINE Alu 1 310 -1 1491 206 7 14 chr3 190971132 190971423 -27065735 + AluJo SINE Alu 13 301 -11 1860 236 18 68 chr3 190971446 190972112 -27065046 - L1MC4a LINE L1 0 7808 7176 1103 193 47 137 chr3 190972120 190972668 -27064490 + L1MD3 LINE L1 6748 7246 -749 7791 47 0 11 chr3 190973160 190974923 -27062235 - L1PA5 LINE L1 -1 6153 4397 16250 60 2 2 chr3 190974923 190977036 -27060122 + L1P LINE L1 1111 3223 -2923 1959 106 18 7 chr3 190977352 190977626 -27059532 - AluSq SINE Alu -30 283 7 442 235 65 53 chr3 190978139 190978444 -27058714 - L2 LINE L2 -268 3045 2671 22 35 0 0 chr3 190978668 190978697 -27058461 + AT_rich Low_complexity Low_complexity 1 29 0 498 299 80 32 chr3 190978873 190979060 -27058098 + MIR SINE MIR 52 247 -15 22 0 0 0 chr3 190979351 190979373 -27057785 + AT_rich Low_complexity Low_complexity 1 22 0 2387 81 0 3 chr3 190979707 190980014 -27057144 - AluY SINE Alu -5 306 1 722 260 25 50 chr3 190980352 190980594 -27056564 + MIR SINE MIR 1 236 -26 2211 107 3 0 chr3 190981930 190982221 -27054937 + AluSp SINE Alu 3 294 -19 296 253 13 13 chr3 190983019 190983098 -27054060 + MIR SINE MIR 71 149 -113 920 132 0 0 chr3 190983623 190983759 -27053399 + FLAM_C SINE Alu 2 137 -6 210 331 137 16 chr3 190983781 190983824 -27053334 - L2 LINE L2 -35 3237 3201 180 0 0 0 chr3 190983824 190983844 -27053314 + (CAA)n Simple_repeat Simple_repeat 2 21 0 210 331 137 16 chr3 190983844 190983924 -27053234 - L2 LINE L2 -71 3201 3099 349 259 26 26 chr3 190985813 190985929 -27051229 + MER58A DNA MER1_type 1 116 0 445 289 5 27 chr3 190985929 190986117 -27051041 + L1MA10 LINE L1 5988 6333 -1 504 276 81 38 chr3 190986120 190986330 -27050828 - MER5C DNA MER1_type -105 219 1 199 209 0 23 chr3 190986660 190986703 -27050455 + L2 LINE L2 3271 3312 -1 17876 176 12 10 chr3 190987109 190994149 -27043009 - L1PA14 LINE L1 0 7599 1 385 241 60 43 chr3 190994282 190994398 -27042760 - MIR SINE MIR -28 234 117 1962 128 20 0 chr3 190994864 190995162 -27041996 + AluY SINE Alu 6 309 -2 586 292 58 22 chr3 190995422 190995648 -27041510 + MIR SINE MIR 2 235 -27 252 274 0 0 chr3 190995769 190995820 -27041338 + polypurine Low_complexity Low_complexity 3 53 0 180 135 0 0 chr3 190996349 190996386 -27040772 + (T)n Simple_repeat Simple_repeat 1 37 0 243 203 0 0 chr3 190996816 190996875 -27040283 + (CA)n Simple_repeat Simple_repeat 2 60 0 22 0 0 0 chr3 190996912 190996934 -27040224 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr3 190997064 190997098 -27040060 + AT_rich Low_complexity Low_complexity 1 34 0 2233 92 0 0 chr3 190997253 190997566 -27039592 - AluSx SINE Alu 0 314 2 1281 273 106 56 chr3 190997642 190997921 -27039237 - MLT1G1 LTR MaLR -12 583 319 1760 154 18 96 chr3 190997921 190998316 -27038842 - MLT1A1 LTR MaLR 0 365 2 1281 273 106 56 chr3 190998316 190998586 -27038572 - MLT1G1 LTR MaLR -276 319 7 531 284 70 10 chr3 190999071 190999272 -27037886 + MER58C DNA MER1_type 1 213 -2 201 296 185 12 chr3 190999350 190999431 -27037727 - MER5A DNA MER1_type -92 97 3 186 171 0 0 chr3 190999985 191000026 -27037132 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 185 362 54 72 chr3 191000974 191001253 -27035905 + L2 LINE L2 2841 3114 -158 327 237 0 89 chr3 191001898 191002033 -27035125 - MER94 DNA DNA 0 134 12 660 278 27 40 chr3 191002091 191002314 -27034844 - MIR SINE MIR -38 224 5 501 17 0 0 chr3 191002383 191002441 -27034717 + (TCCCC)n Simple_repeat Simple_repeat 5 62 0 370 257 48 9 chr3 191002452 191002557 -27034601 - L2 LINE L2 -9 3304 3196 258 246 0 16 chr3 191002763 191002824 -27034334 - L2 LINE L2 0 3313 3254 781 253 0 32 chr3 191004817 191005007 -27032151 - MER5A DNA MER1_type 0 189 6 524 248 69 37 chr3 191005485 191005703 -27031455 + MIR SINE MIR 36 260 -2 31 26 0 0 chr3 191007291 191007329 -27029829 + AT_rich Low_complexity Low_complexity 1 38 0 237 337 61 20 chr3 191007329 191007427 -27029731 + L2 LINE L2 3212 3313 0 250 363 47 35 chr3 191009198 191009369 -27027789 + MIR3 SINE MIR 19 191 -17 358 217 57 11 chr3 191009400 191009509 -27027649 + MLT1J2 LTR MaLR 17 132 -315 795 237 0 12 chr3 191009962 191010131 -27027027 + AluJo SINE Alu 121 287 -25 278 152 71 20 chr3 191010132 191010231 -27026927 + (TATAA)n Simple_repeat Simple_repeat 5 108 0 747 167 0 17 chr3 191010246 191010366 -27026792 - FLAM_C SINE Alu -17 126 9 348 318 40 20 chr3 191010614 191010762 -27026396 - MIR3 SINE MIR -1 207 57 343 281 0 0 chr3 191010890 191010972 -27026186 - MIR SINE MIR -13 249 168 821 208 198 96 chr3 191011062 191011375 -27025783 + MLT1F1 LTR MaLR 131 475 -92 306 90 0 45 chr3 191011460 191011527 -27025631 + (TA)n Simple_repeat Simple_repeat 2 65 0 1141 243 95 16 chr3 191011887 191012204 -27024954 + MER2 DNA MER2_type 1 342 -3 186 184 0 26 chr3 191012783 191012821 -27024337 + MIR SINE MIR 218 254 -8 23 0 0 0 chr3 191013157 191013180 -27023978 + AT_rich Low_complexity Low_complexity 1 23 0 205 159 68 23 chr3 191013322 191013366 -27023792 - L2 LINE L2 -93 3220 3175 851 261 95 148 chr3 191013383 191014046 -27023112 - L2 LINE L2 -949 2365 1797 1704 244 92 11 chr3 191014046 191014570 -27022588 - MLT1F1 LTR MaLR 0 567 2 851 261 95 148 chr3 191014570 191015146 -27022012 - L2 LINE L2 -1517 1797 1192 216 429 0 0 chr3 191015155 191015246 -27021912 + L2 LINE L2 2574 2664 -650 767 333 124 16 chr3 191015389 191015938 -27021220 - L2 LINE L2 -555 2759 2152 355 284 107 53 chr3 191016137 191016306 -27020852 + MER5B DNA MER1_type 1 178 0 186 43 0 0 chr3 191016459 191016482 -27020676 + (A)n Simple_repeat Simple_repeat 1 23 0 1120 239 103 61 chr3 191016501 191016994 -27020164 + MLT1H LTR MaLR 36 549 0 467 287 48 64 chr3 191017342 191017593 -27019565 - MIR SINE MIR -3 259 13 2002 96 4 0 chr3 191017600 191017860 -27019298 - AluSg SINE Alu -45 265 5 259 358 133 26 chr3 191017993 191018219 -27018939 - MIR SINE MIR -6 256 7 346 321 140 15 chr3 191018319 191018590 -27018568 + L2 LINE L2 3005 3309 -4 13482 192 30 14 chr3 191019114 191020130 -27017028 - L1MA4 LINE L1 -282 6018 5020 2134 93 0 45 chr3 191020130 191020443 -27016715 - AluSc SINE Alu -10 299 1 13482 192 30 14 chr3 191020443 191023184 -27013974 - L1MA4 LINE L1 -1280 5020 2200 2405 156 25 25 chr3 191023193 191023673 -27013485 + L1M1 LINE L1 2718 3197 -4368 4110 140 18 75 chr3 191023673 191023767 -27013391 + Tigger3(Golem) DNA MER2_type 2240 2338 -690 2268 106 0 0 chr3 191023767 191024070 -27013088 - AluSg SINE Alu -5 305 3 4110 140 18 75 chr3 191024070 191024812 -27012346 + Tigger3(Golem) DNA MER2_type 2338 3028 0 210 283 0 0 chr3 191025479 191025532 -27011626 + A-rich Low_complexity Low_complexity 1 53 0 223 305 178 0 chr3 191025800 191025918 -27011240 + MIR SINE MIR 99 237 -25 212 331 186 34 chr3 191026411 191026734 -27010424 + L2 LINE L2 2395 2766 -548 1085 325 57 47 chr3 191027097 191027690 -27009468 + L1M2c LINE L1 3 601 -6188 4294 174 71 23 chr3 191028632 191030153 -27007005 + L1MA6 LINE L1 4224 5821 -479 1820 186 54 15 chr3 191030155 191030547 -27006611 + L1MA6 LINE L1 5888 6294 -6 219 69 0 0 chr3 191030716 191030745 -27006413 + (CA)n Simple_repeat Simple_repeat 2 30 0 2162 114 3 0 chr3 191031176 191031474 -27005684 + AluSp SINE Alu 1 299 -14 270 219 0 0 chr3 191032424 191032488 -27004670 + T-rich Low_complexity Low_complexity 1 64 0 223 159 0 32 chr3 191033309 191033372 -27003786 + (TA)n Simple_repeat Simple_repeat 1 61 0 10008 192 7 21 chr3 191033374 191035708 -27001450 - L1P5 LINE L1 -358 5793 3508 2238 117 0 0 chr3 191035708 191036015 -27001143 - AluSx SINE Alu -5 307 1 10008 192 7 21 chr3 191036015 191036580 -27000578 - L1P5 LINE L1 -2643 3508 2937 4465 216 31 39 chr3 191036743 191036793 -27000365 - L1MB2 LINE L1 -2 6169 6120 2107 69 0 29 chr3 191036793 191037069 -27000089 - AluY SINE Alu -5 306 39 4465 216 31 39 chr3 191037069 191039411 -26997747 - L1MB2 LINE L1 -51 6120 3797 2183 270 32 14 chr3 191039421 191040233 -26996925 - L1M4 LINE L1 -1945 4201 3375 375 251 114 92 chr3 191040641 191040761 -26996397 + MIR SINE MIR 28 144 -118 2248 75 0 17 chr3 191040761 191041054 -26996104 + AluY SINE Alu 1 288 -23 21512 26 1 0 chr3 191041061 191044436 -26992722 + L1PA3 LINE L1 2795 6155 0 375 251 114 92 chr3 191044436 191044534 -26992624 + MIR SINE MIR 149 259 -3 252 0 0 0 chr3 191045331 191045359 -26991799 + (TTGTG)n Simple_repeat Simple_repeat 5 32 0 1289 157 9 5 chr3 191045413 191045623 -26991535 - AluJo SINE Alu -99 213 3 1443 213 88 70 chr3 191045817 191046306 -26990852 + MLT1D LTR MaLR 8 505 0 373 320 114 17 chr3 191046796 191046971 -26990187 - MIR SINE MIR -50 212 21 313 241 0 0 chr3 191046971 191047029 -26990129 - L2 LINE L2 0 3272 3215 468 232 237 14 chr3 191047037 191047244 -26989914 - MIR SINE MIR -8 254 2 2118 86 6 29 chr3 191047417 191047449 -26989709 - AluY SINE Alu -3 308 277 336 64 0 0 chr3 191047449 191047496 -26989662 + (TTG)n Simple_repeat Simple_repeat 2 48 0 2118 86 6 29 chr3 191047496 191047778 -26989380 - AluY SINE Alu -34 277 1 2431 59 3 3 chr3 191047779 191048085 -26989073 - MLT2A1 LTR ERVL -138 306 1 1668 186 3 7 chr3 191049077 191049367 -26987791 + AluJo SINE Alu 1 289 -23 649 350 73 37 chr3 191049403 191049929 -26987229 - L2 LINE L2 -62 3251 2700 257 344 110 25 chr3 191051845 191052008 -26985150 - L2 LINE L2 0 3272 3096 26 50 0 0 chr3 191052500 191052540 -26984618 + AT_rich Low_complexity Low_complexity 1 40 0 8709 184 61 27 chr3 191052810 191054211 -26982947 + L1M1 LINE L1 27 1379 -6186 1885 131 10 3 chr3 191054211 191054502 -26982656 + AluSx SINE Alu 9 301 -11 8709 184 61 27 chr3 191054502 191055870 -26981288 + L1M1 LINE L1 1379 2699 -4866 2317 98 0 9 chr3 191055870 191056186 -26980972 + AluSq SINE Alu 1 313 0 8709 184 61 27 chr3 191056186 191056977 -26980181 + L1M1 LINE L1 2699 4798 -2767 1180 95 0 53 chr3 191056977 191057166 -26979992 + AluSp SINE Alu 130 308 -5 279 179 0 0 chr3 191057195 191057262 -26979896 + (TG)n Simple_repeat Simple_repeat 2 68 0 24 53 0 0 chr3 191057700 191057738 -26979420 + AT_rich Low_complexity Low_complexity 1 38 0 198 297 78 16 chr3 191057766 191057830 -26979328 - MIR SINE MIR -187 75 8 28 29 0 0 chr3 191057932 191057967 -26979191 + AT_rich Low_complexity Low_complexity 1 35 0 1938 145 0 0 chr3 191058751 191059059 -26978099 + AluSx SINE Alu 1 308 0 509 288 73 11 chr3 191059374 191059551 -26977607 - MIR SINE MIR -39 223 36 257 267 43 52 chr3 191059687 191059803 -26977355 - L2 LINE L2 -1 3312 3198 294 29 0 0 chr3 191059856 191059891 -26977267 + (CA)n Simple_repeat Simple_repeat 2 36 0 225 83 0 0 chr3 191060317 191060353 -26976805 + (TC)n Simple_repeat Simple_repeat 2 37 0 1943 136 0 0 chr3 191060364 191060687 -26976471 - AluSg SINE Alu 0 323 1 194 261 29 43 chr3 191060835 191060904 -26976254 - MIR SINE MIR -24 238 171 210 351 101 7 chr3 191060973 191061121 -26976037 - L2 LINE L2 -214 3058 2897 1853 149 10 0 chr3 191061982 191062277 -26974881 + AluJo SINE Alu 15 312 0 24 0 0 0 chr3 191063050 191063074 -26974084 + AT_rich Low_complexity Low_complexity 1 24 0 1336 229 16 57 chr3 191063936 191064321 -26972837 - MLT1A2 LTR MaLR -2 372 4 278 328 31 99 chr3 191064795 191065118 -26972040 + L3 LINE CR1 1242 1542 -35 2425 94 11 3 chr3 191067473 191067823 -26969335 - THE1A LTR MaLR 0 355 3 183 306 106 12 chr3 191067976 191068061 -26969097 + L2 LINE L2 2990 3082 -231 527 195 201 35 chr3 191068064 191068233 -26968925 - MER34 LTR ERV1 -307 235 39 333 0 0 0 chr3 191068234 191068271 -26968887 + (TG)n Simple_repeat Simple_repeat 2 38 0 2147 117 0 0 chr3 191068275 191068566 -26968592 - AluSx SINE Alu -21 291 1 1638 213 31 18 chr3 191068864 191069249 -26967909 - MLT1B LTR MaLR 0 390 1 2116 100 13 13 chr3 191069281 191069581 -26967577 + AluSp SINE Alu 1 300 -13 1842 179 52 0 chr3 191070135 191070465 -26966693 - MER7A DNA MER2_type -1 345 1 253 321 121 12 chr3 191070985 191071150 -26966008 + MIR SINE MIR 80 262 0 201 121 0 0 chr3 191071351 191071384 -26965774 + (GA)n Simple_repeat Simple_repeat 1 33 0 1467 237 80 81 chr3 191071965 191072026 -26965132 + MLT1E LTR MaLR 3 63 -442 482 81 68 0 chr3 191072026 191072100 -26965058 + MADE1 DNA Mariner 2 80 0 1467 237 80 81 chr3 191072100 191072631 -26964527 + MLT1E LTR MaLR 63 505 0 816 172 12 31 chr3 191073665 191073828 -26963330 + L1MA9 LINE L1 5858 6017 -295 1171 107 0 0 chr3 191073829 191073988 -26963170 - AluSq SINE Alu -154 159 1 241 307 13 0 chr3 191073988 191074063 -26963095 + MIR3 SINE MIR 79 154 -54 383 241 251 15 chr3 191074553 191074752 -26962406 - MIR SINE MIR -10 252 7 25 0 0 0 chr3 191074986 191075011 -26962147 + AT_rich Low_complexity Low_complexity 1 25 0 190 331 123 8 chr3 191075646 191075776 -26961382 - L3b LINE CR1 -327 1256 1112 2526 62 0 0 chr3 191075859 191076168 -26960990 - AluY SINE Alu -2 309 1 21 0 0 0 chr3 191076246 191076267 -26960891 + AT_rich Low_complexity Low_complexity 1 21 0 418 350 104 20 chr3 191076423 191076893 -26960265 + L2 LINE L2 2698 3272 0 761 230 0 6 chr3 191076921 191077082 -26960076 + FAM SINE Alu 5 164 -11 21 36 0 0 chr3 191077737 191077765 -26959393 + AT_rich Low_complexity Low_complexity 1 28 0 924 297 39 29 chr3 191078232 191078613 -26958545 - MLT1J LTR MaLR -31 480 96 226 350 134 0 chr3 191078803 191078900 -26958258 - L2 LINE L2 -10 3303 3194 2483 48 0 3 chr3 191079366 191079661 -26957497 - AluY SINE Alu -17 294 1 1963 250 33 16 chr3 191079661 191079990 -26957168 - MER74B LTR ERVL -75 547 206 1902 206 3 3 chr3 191079990 191080355 -26956803 - MLT1A1 LTR MaLR 0 365 1 1963 250 33 16 chr3 191080355 191080509 -26956649 - MER74B LTR ERVL -416 206 56 578 262 146 0 chr3 191081011 191081175 -26955983 + MER5A DNA MER1_type 2 189 0 2255 107 3 0 chr3 191082233 191082542 -26954616 + AluSp SINE Alu 1 310 -3 368 102 71 0 chr3 191082800 191082898 -26954260 + (TA)n Simple_repeat Simple_repeat 2 106 0 254 217 0 36 chr3 191082911 191082994 -26954164 + T-rich Low_complexity Low_complexity 4 83 0 2749 6 3 3 chr3 191083850 191084161 -26952997 + AluYa5 SINE Alu 1 311 0 1360 182 16 62 chr3 191084189 191084357 -26952801 - AluJo SINE Alu -18 294 145 240 59 0 0 chr3 191084357 191084391 -26952767 + (TA)n Simple_repeat Simple_repeat 1 34 0 1360 182 16 62 chr3 191084391 191084530 -26952628 - AluJo SINE Alu -167 145 1 1688 198 99 3 chr3 191085046 191085400 -26951758 - MLT1C LTR MaLR 0 467 80 431 254 39 31 chr3 191085777 191085907 -26951251 - L2 LINE L2 -1 3312 3182 31 44 0 0 chr3 191086068 191086113 -26951045 + AT_rich Low_complexity Low_complexity 1 45 0 29 28 0 0 chr3 191086568 191086604 -26950554 + AT_rich Low_complexity Low_complexity 1 36 0 382 329 53 19 chr3 191087914 191088121 -26949037 - L2 LINE L2 0 3313 3100 1526 228 60 29 chr3 191088309 191088757 -26948401 - MLT1C LTR MaLR 0 467 6 27 29 0 0 chr3 191089945 191089979 -26947179 + AT_rich Low_complexity Low_complexity 1 34 0 2429 68 0 0 chr3 191090960 191091256 -26945902 + AluY SINE Alu 1 296 -15 4279 100 31 9 chr3 191091386 191091738 -26945420 - L1PB2 LINE L1 0 6151 5775 447 19 0 0 chr3 191091738 191091790 -26945368 + (TG)n Simple_repeat Simple_repeat 2 53 0 4279 100 31 9 chr3 191091790 191092105 -26945053 - L1PB2 LINE L1 -376 5775 5469 1925 128 35 3 chr3 191092287 191092575 -26944583 + AluSq SINE Alu 1 297 -16 306 0 0 0 chr3 191092578 191092612 -26944546 + (CAA)n Simple_repeat Simple_repeat 2 35 0 239 275 29 0 chr3 191092870 191092939 -26944219 - MIR SINE MIR -1 261 191 572 189 13 59 chr3 191093048 191093201 -26943957 + MER5B DNA MER1_type 32 177 -1 22 0 0 0 chr3 191093963 191093985 -26943173 + AT_rich Low_complexity Low_complexity 1 22 0 259 189 54 68 chr3 191094590 191094650 -26942508 + MLT1B LTR MaLR 11 69 -321 2079 181 31 3 chr3 191094650 191095031 -26942127 + MSTB1 LTR MaLR 1 392 -40 4286 193 54 10 chr3 191195031 191196202 -26840956 + L1 LINE L1 3544 4793 -1353 1195 209 9 0 chr3 191196202 191196427 -26840731 - AluJo SINE Alu -85 227 1 1561 238 19 5 chr3 191196428 191196806 -26840352 - L1 LINE L1 -3370 3838 3456 1239 247 155 15 chr3 191196841 191197262 -26839896 - L1 LINE L1 -5565 1644 950 3200 124 7 17 chr3 191197266 191197806 -26839352 + L1MA4A LINE L1 5764 6298 -5 1230 261 82 24 chr3 191197843 191198060 -26839098 - L1MC4a LINE L1 -962 6846 6596 314 96 0 19 chr3 191198060 191198112 -26839046 + (TAGA)n Simple_repeat Simple_repeat 1 51 0 1230 261 82 24 chr3 191198112 191198273 -26838885 - L1MC4a LINE L1 -1212 6596 6446 658 256 13 42 chr3 191198280 191198518 -26838640 - L1MC4a LINE L1 -1748 6060 5830 494 306 124 46 chr3 191198526 191198921 -26838237 - LTR16A LTR ERVL -7 443 18 690 158 71 0 chr3 191198983 191199110 -26838048 - MER3 DNA MER1_type 0 209 74 300 280 33 47 chr3 191200027 191200177 -26836981 + MER103 DNA DNA 16 163 -3 301 213 16 0 chr3 191200977 191201038 -26836120 - MER94 DNA DNA -45 89 28 1530 223 43 5 chr3 191201160 191201536 -26835622 + MLT1B LTR MaLR 1 390 0 183 114 0 0 chr3 191202406 191202441 -26834717 + (A)n Simple_repeat Simple_repeat 1 35 0 387 56 0 0 chr3 191202444 191202498 -26834660 + (CA)n Simple_repeat Simple_repeat 1 54 0 3222 201 39 27 chr3 191204834 191205571 -26831587 - L1MB7 LINE L1 -16 6168 5423 1738 188 67 17 chr3 191205573 191205989 -26831169 - L1MB7 LINE L1 -1062 5084 4648 258 32 0 0 chr3 191206329 191206360 -26830798 + (TG)n Simple_repeat Simple_repeat 2 32 0 189 0 0 0 chr3 191207482 191207503 -26829655 + (T)n Simple_repeat Simple_repeat 1 21 0 381 297 18 124 chr3 191208628 191208911 -26828247 - MIR SINE MIR -6 256 4 27 0 0 0 chr3 191208955 191208982 -26828176 + AT_rich Low_complexity Low_complexity 1 27 0 26 0 0 0 chr3 191209019 191209045 -26828113 + AT_rich Low_complexity Low_complexity 1 26 0 230 250 80 0 chr3 191209978 191210066 -26827092 - HAL1b LINE L1 -8 1340 1246 183 129 0 0 chr3 191210108 191210139 -26827019 + (CA)n Simple_repeat Simple_repeat 2 32 0 375 238 48 0 chr3 191210540 191210624 -26826534 - MIR3 SINE MIR -54 154 67 337 310 165 0 chr3 191210732 191210890 -26826268 - MIR SINE MIR 0 262 79 2126 95 0 0 chr3 191211562 191211857 -26825301 - L1PA7 LINE L1 0 6154 5860 2056 96 4 0 chr3 191211873 191212144 -26825014 - AluSp SINE Alu -8 305 34 1479 245 46 18 chr3 191212233 191212686 -26824472 - MLT1C LTR MaLR 0 467 2 270 235 15 44 chr3 191215127 191215263 -26821895 + (TA)n Simple_repeat Simple_repeat 1 132 0 1407 217 54 23 chr3 191215807 191216199 -26820959 - LTR52 LTR ERVL -14 407 4 279 0 0 0 chr3 191216935 191216966 -26820192 + (TG)n Simple_repeat Simple_repeat 2 32 0 676 218 0 8 chr3 191217052 191217185 -26819973 + FLAM_A SINE Alu 1 132 -1 196 407 0 0 chr3 191217334 191217415 -26819743 - MIR SINE MIR -66 142 62 861 217 12 0 chr3 191218476 191218642 -26818516 - FAM SINE Alu -6 169 2 260 303 11 0 chr3 191218702 191218791 -26818367 - L1MC4 LINE L1 -1339 6703 6614 32 43 0 0 chr3 191218791 191218837 -26818321 + AT_rich Low_complexity Low_complexity 1 46 0 333 0 0 0 chr3 191218849 191218886 -26818272 + (TG)n Simple_repeat Simple_repeat 2 38 0 1925 136 7 10 chr3 191218895 191219196 -26817962 - AluSx SINE Alu -12 300 1 237 314 100 71 chr3 191219405 191219615 -26817543 + MIR SINE MIR 47 262 0 1652 176 35 7 chr3 191220129 191220453 -26816705 + AluJo SINE Alu 3 312 0 474 286 109 41 chr3 191223715 191224201 -26812957 - HAL1 LINE L1 -78 2429 1911 693 279 111 7 chr3 191224240 191224520 -26812638 - HAL1 LINE L1 -685 1822 1514 2814 124 2 33 chr3 191224568 191224637 -26812521 - L1PB1 LINE L1 -300 5855 5785 330 26 0 0 chr3 191224637 191224676 -26812482 + (TG)n Simple_repeat Simple_repeat 2 40 0 2814 124 2 33 chr3 191224676 191224693 -26812465 - L1PB1 LINE L1 -370 5785 5769 7247 46 2 1 chr3 191224693 191226375 -26810783 - L1PA5 LINE L1 0 6154 4472 2814 124 2 33 chr3 191226375 191226790 -26810368 - L1PB1 LINE L1 -386 5769 5367 262 183 49 37 chr3 191226836 191226918 -26810240 + (CTTAT)n Simple_repeat Simple_repeat 5 87 0 194 119 48 0 chr3 191227337 191227379 -26809779 + (TCTCTG)n Simple_repeat Simple_repeat 5 48 0 24 53 0 0 chr3 191229094 191229132 -26808026 + AT_rich Low_complexity Low_complexity 1 38 0 275 276 35 62 chr3 191229151 191229296 -26807862 - MIR SINE MIR -57 205 65 15579 28 3 0 chr3 191229696 191232312 -26804846 - L1PA3 LINE L1 0 6155 3523 273 29 0 0 chr3 191232389 191232423 -26804735 + (TG)n Simple_repeat Simple_repeat 2 35 0 2995 184 38 10 chr3 191232457 191233040 -26804118 - MER7C DNA MER2_type -3 599 1 401 276 5 49 chr3 191233040 191233225 -26803933 + (TATATG)n Simple_repeat Simple_repeat 2 178 0 330 283 0 48 chr3 191233170 191233315 -26803843 + (CATATA)n Simple_repeat Simple_repeat 3 140 0 * 207 139 0 0 chr3 191233323 191233359 -26803799 + (TG)n Simple_repeat Simple_repeat 2 37 0 201 121 0 0 chr3 191233446 191233479 -26803679 + (TG)n Simple_repeat Simple_repeat 2 34 0 25 31 0 0 chr3 191234100 191234132 -26803026 + AT_rich Low_complexity Low_complexity 1 32 0 284 318 56 56 chr3 191234370 191234565 -26802593 + MIR3 SINE MIR 12 206 -2 1550 69 0 5 chr3 191235105 191235309 -26801849 - AluY SINE Alu -24 287 85 1955 112 42 7 chr3 191235369 191235655 -26801503 + AluSq SINE Alu 1 296 -17 360 320 96 36 chr3 191235878 191236128 -26801030 - L3 LINE CR1 -8 1569 1305 258 251 114 48 chr3 191236166 191236333 -26800825 - MLT1L LTR MaLR -1 614 437 377 325 179 31 chr3 191236597 191236982 -26800176 - L3 LINE CR1 -295 1282 841 2708 253 44 36 chr3 191236990 191238098 -26799060 - L1ME2 LINE L1 -9 6224 5127 1899 139 32 23 chr3 191238098 191238407 -26798751 + AluSx SINE Alu 1 312 0 2708 253 44 36 chr3 191238407 191238424 -26798734 - L1ME2 LINE L1 -1106 5127 5112 1582 171 25 4 chr3 191238424 191238698 -26798460 + AluJb SINE Alu 1 280 -32 414 0 0 0 chr3 191238700 191238746 -26798412 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 2708 253 44 36 chr3 191238746 191239314 -26797844 - L1ME2 LINE L1 -1121 5112 4526 1741 286 94 32 chr3 191239298 191240857 -26796301 - L1ME2 LINE L1 -3664 2551 885 * 1856 167 3 0 chr3 191240857 191241157 -26796001 + AluSx SINE Alu 1 301 -11 1741 286 94 32 chr3 191241157 191241320 -26795838 - L1ME2 LINE L1 -5330 885 733 1600 215 131 78 chr3 191241360 191242243 -26794915 + LTR1B LTR ERV1 1 1020 0 350 302 31 26 chr3 191242320 191242512 -26794646 - L1ME2 LINE L1 -5915 481 289 269 317 0 0 chr3 191242706 191242788 -26794370 - L3 LINE CR1 -741 836 755 501 306 13 69 chr3 191242909 191243141 -26794017 + MIR SINE MIR 14 232 -30 1026 140 6 39 chr3 191243351 191243530 -26793628 - AluSg/x SINE Alu -3 309 137 2345 44 0 7 chr3 191243748 191244041 -26793117 + L1PA4 LINE L1 5865 6155 0 21 0 0 0 chr3 191244041 191244062 -26793096 + AT_rich Low_complexity Low_complexity 1 21 0 183 389 7 40 chr3 191244267 191244416 -26792742 - L3 LINE CR1 -1067 510 367 830 174 6 29 chr3 191246413 191246585 -26790573 - L1M4 LINE L1 -554 5630 5463 23 33 0 0 chr3 191246779 191246809 -26790349 + AT_rich Low_complexity Low_complexity 1 30 0 1046 189 31 16 chr3 191246869 191247123 -26790035 - L1MA4 LINE L1 -4 6296 6039 1584 155 11 7 chr3 191247123 191247401 -26789757 - L1MA7 LINE L1 -3 6288 6004 189 0 0 0 chr3 191247417 191247438 -26789720 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 310 114 29 0 chr3 191248571 191248641 -26788517 + T-rich Low_complexity Low_complexity 4 75 0 386 241 84 103 chr3 191248793 191248996 -26788162 - L3 LINE CR1 -931 646 448 1128 210 51 0 chr3 191249320 191249596 -26787562 + L1MA4 LINE L1 6010 6299 -1 382 236 127 52 chr3 191249600 191249934 -26787224 - LTR48B LTR ERV1 -35 722 226 810 264 48 17 chr3 191250018 191250313 -26786845 - L1MC5 LINE L1 -409 7552 7249 3449 211 31 14 chr3 191250394 191251109 -26786049 + MER44D DNA MER2_type 1 599 -6 584 224 118 30 chr3 191251112 191251349 -26785809 - L1MC5 LINE L1 -764 7197 6940 237 200 150 40 chr3 191251640 191251740 -26785418 - MIR SINE MIR -26 236 126 21 0 0 0 chr3 191253096 191253117 -26784041 + AT_rich Low_complexity Low_complexity 1 21 0 505 226 110 135 chr3 191254279 191254717 -26782441 - MER34C LTR ERV1 -125 460 34 956 245 114 70 chr3 191255113 191255586 -26781572 + MLT1F1 LTR MaLR 74 567 0 810 290 12 4 chr3 191255714 191255973 -26781185 - MIR SINE MIR 0 262 2 198 211 0 0 chr3 191256788 191256826 -26780332 + MIR SINE MIR 112 149 -113 2620 7 0 0 chr3 191256850 191257137 -26780021 + AluYb8 SINE Alu 32 318 0 626 232 133 105 chr3 191257313 191257826 -26779332 - L1MC4 LINE L1 -13 8029 7503 1272 193 56 7 chr3 191258046 191258331 -26778827 + L1MA4A LINE L1 6002 6300 -3 3629 178 43 30 chr3 191258488 191259212 -26777946 - MER44D DNA MER2_type 0 605 1 2527 107 13 11 chr3 191260450 191260824 -26776334 + THE1C LTR MaLR 1 375 0 21 36 0 0 chr3 191260846 191260874 -26776284 + AT_rich Low_complexity Low_complexity 1 28 0 225 0 0 0 chr3 191260941 191260966 -26776192 + (CAA)n Simple_repeat Simple_repeat 2 26 0 684 109 50 0 chr3 191261073 191261174 -26775984 - U6 snRNA snRNA 0 107 2 232 351 135 0 chr3 191261732 191261843 -26775315 + MIR3 SINE MIR 47 172 -36 198 0 0 0 chr3 191262171 191262193 -26774965 + (T)n Simple_repeat Simple_repeat 1 22 0 331 246 254 31 chr3 191262387 191262643 -26774515 - L1ME LINE L1 -462 5659 5347 2756 127 12 109 chr3 191262654 191263212 -26773946 - MER41C LTR ERV1 0 554 51 3282 86 2 15 chr3 191263214 191263677 -26773481 - MER41A LTR ERV1 -96 458 2 1631 166 86 18 chr3 191265269 191265595 -26771563 - MER7A DNA MER2_type 0 346 1 22 35 0 0 chr3 191265917 191265946 -26771212 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr3 191266369 191266398 -26770760 + AT_rich Low_complexity Low_complexity 1 29 0 182 356 23 11 chr3 191267716 191267803 -26769355 - L2 LINE L2 0 3313 3226 304 297 0 76 chr3 191268007 191268125 -26769033 + MIR SINE MIR 16 124 -84 21 0 0 0 chr3 191268753 191268774 -26768384 + AT_rich Low_complexity Low_complexity 1 21 0 298 260 8 87 chr3 191269532 191269659 -26767499 - MIR SINE MIR -10 252 136 362 289 27 78 chr3 191269807 191270095 -26767063 - L2 LINE L2 -39 3274 2772 2185 108 0 10 chr3 191270725 191271030 -26766128 + AluSx SINE Alu 1 302 -10 1669 167 36 31 chr3 191271854 191272244 -26764914 + L1MA7 LINE L1 5893 6284 -7 26 64 0 0 chr3 191272247 191272294 -26764864 + AT_rich Low_complexity Low_complexity 1 47 0 328 246 133 95 chr3 191273874 191274138 -26763020 + HAL1 LINE L1 2231 2504 -3 423 303 42 14 chr3 191274309 191274451 -26762707 - L2 LINE L2 -4 3309 3164 261 334 109 52 chr3 191274771 191275423 -26761735 - L2 LINE L2 -556 2758 2070 1441 68 136 23 chr3 191276718 191276976 -26760182 - AluY SINE Alu 0 322 40 510 120 0 0 chr3 191276976 191277051 -26760107 + AluY SINE Alu 34 108 -203 386 138 0 0 chr3 191277051 191277116 -26760042 + AluY SINE Alu 71 135 -166 2111 98 10 0 chr3 191277116 191277411 -26759747 + AluY SINE Alu 1 298 -13 40 0 0 0 chr3 191277640 191277680 -26759478 + AT_rich Low_complexity Low_complexity 1 40 0 683 118 0 10 chr3 191277737 191277839 -26759319 - LTR1B LTR ERV1 -725 101 1 290 67 22 0 chr3 191279023 191279068 -26758090 + MADE1 DNA Mariner 4 49 -31 21 36 0 0 chr3 191279628 191279656 -26757502 + AT_rich Low_complexity Low_complexity 1 28 0 1540 195 3 31 chr3 191279662 191279972 -26757186 + AluJo SINE Alu 5 306 0 24 67 0 0 chr3 191280749 191280794 -26756364 + AT_rich Low_complexity Low_complexity 1 45 0 32 0 0 0 chr3 191280849 191280881 -26756277 + AT_rich Low_complexity Low_complexity 1 32 0 210 162 0 0 chr3 191282819 191282856 -26754302 + T-rich Low_complexity Low_complexity 1 37 0 404 328 8 0 chr3 191282865 191282984 -26754174 - MIR SINE MIR -141 121 2 40 73 0 0 chr3 191283172 191283254 -26753904 + AT_rich Low_complexity Low_complexity 1 82 0 705 268 5 16 chr3 191285094 191285284 -26751874 + MER5A DNA MER1_type 2 189 0 664 331 97 15 chr3 191285528 191285902 -26751256 - L2 LINE L2 -147 3166 2766 3915 138 31 26 chr3 191286337 191286854 -26750304 - MER67C LTR ERV1 0 710 188 216 0 0 0 chr3 191286854 191286878 -26750280 + (TA)n Simple_repeat Simple_repeat 2 25 0 3915 138 31 26 chr3 191286878 191287047 -26750111 - MER67C LTR ERV1 -522 188 21 7464 33 12 36 chr3 191287092 191288568 -26748590 - L1PA4 LINE L1 -1 6154 4695 22 35 0 0 chr3 191288569 191288598 -26748560 + AT_rich Low_complexity Low_complexity 1 29 0 368 361 32 50 chr3 191288761 191289099 -26748059 - L2 LINE L2 -681 2633 2302 1939 132 4 0 chr3 191289907 191290212 -26746946 + AluSx SINE Alu 1 306 0 189 286 107 24 chr3 191292039 191292123 -26745035 + L2 LINE L2 3218 3308 -5 362 379 63 3 chr3 191292383 191292668 -26744490 + L2 LINE L2 2448 2749 -565 321 89 0 0 chr3 191293002 191293047 -26744111 + (CA)n Simple_repeat Simple_repeat 2 46 0 293 329 31 10 chr3 191293187 191293303 -26743855 + L2 LINE L2 2852 2963 -309 265 339 45 18 chr3 191293307 191293528 -26743630 + L1ME LINE L1 5501 5727 -394 23 86 0 0 chr3 191293688 191293746 -26743412 + AT_rich Low_complexity Low_complexity 1 58 0 22 0 0 0 chr3 191293907 191293929 -26743229 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 191294074 191294095 -26743063 + AT_rich Low_complexity Low_complexity 1 21 0 180 219 0 0 chr3 191294109 191294150 -26743008 + (TA)n Simple_repeat Simple_repeat 1 41 0 243 0 0 0 chr3 191295184 191295211 -26741947 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 208 272 43 54 chr3 191295296 191295388 -26741770 - MIR SINE MIR -50 212 122 23 0 0 0 chr3 191295589 191295612 -26741546 + AT_rich Low_complexity Low_complexity 1 23 0 197 353 47 89 chr3 191295916 191296106 -26741052 + MIR SINE MIR 49 230 -32 22 0 0 0 chr3 191297886 191297908 -26739250 + AT_rich Low_complexity Low_complexity 1 22 0 189 269 39 64 chr3 191298258 191298336 -26738822 - MIR SINE MIR -50 212 137 225 204 68 0 chr3 191298563 191298607 -26738551 + HAL1 LINE L1 625 671 -1836 7804 12 2 0 chr3 191299677 191301009 -26736149 - L1PA2 LINE L1 -2 6153 4821 4942 21 0 0 chr3 191301009 191301591 -26735567 + L1PA2 LINE L1 4224 4805 -1341 24 32 0 0 chr3 191302465 191302496 -26734662 + AT_rich Low_complexity Low_complexity 1 31 0 219 88 0 0 chr3 191302652 191302686 -26734472 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 5706 155 11 43 chr3 191302686 191304738 -26732420 - L1PB1 LINE L1 -5 6146 4125 973 246 57 39 chr3 191304949 191305283 -26731875 - MER2 DNA MER2_type -3 341 2 523 248 170 0 chr3 191305308 191305449 -26731709 - MER5A DNA MER1_type -15 174 10 315 0 0 0 chr3 191305497 191305532 -26731626 + (CA)n Simple_repeat Simple_repeat 1 35 0 2199 115 0 10 chr3 191305757 191306070 -26731088 - AluSx SINE Alu -2 310 1 21 82 0 0 chr3 191307206 191307255 -26729903 + AT_rich Low_complexity Low_complexity 1 49 0 487 360 36 36 chr3 191307502 191307777 -26729381 - L2 LINE L2 0 3272 2998 861 212 6 0 chr3 191308352 191308522 -26728636 + MER45A DNA AcHobo 1 171 -7 982 246 96 70 chr3 191309122 191309797 -26727361 - HAL1 LINE L1 0 2507 1815 372 336 32 23 chr3 191309787 191310007 -26727151 - HAL1 LINE L1 -1654 853 632 * 1761 164 0 4 chr3 191310084 191310365 -26726793 - AluSx SINE Alu -30 282 3 951 305 108 18 chr3 191310413 191310849 -26726309 - HAL1 LINE L1 -2029 478 4 186 43 0 0 chr3 191312138 191312161 -26724997 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1672 168 0 25 chr3 191312546 191312831 -26724327 - AluJo SINE Alu -24 288 11 1719 176 7 4 chr3 191312930 191313203 -26723955 - AluJo SINE Alu -38 274 1 2429 72 7 0 chr3 191313212 191313518 -26723640 - AluY SINE Alu -3 308 1 24 67 0 0 chr3 191314145 191314190 -26722968 + AT_rich Low_complexity Low_complexity 1 45 0 486 309 21 11 chr3 191314859 191315050 -26722108 + MLT1K LTR MaLR 396 588 0 21 57 0 0 chr3 191315652 191315687 -26721471 + AT_rich Low_complexity Low_complexity 1 35 0 207 146 0 0 chr3 191316055 191316096 -26721062 + (TC)n Simple_repeat Simple_repeat 2 42 0 553 268 201 9 chr3 191317490 191317829 -26719329 - L1MEc LINE L1 -3383 2832 2429 337 271 107 33 chr3 191317836 191318092 -26719066 - L1MEc LINE L1 -3828 2389 2166 323 290 86 103 chr3 191318275 191318623 -26718535 - L1MEc LINE L1 -5775 430 89 960 311 92 33 chr3 191318695 191319183 -26717975 - LTR33 LTR ERVL -2 519 3 1203 277 66 11 chr3 191320429 191320899 -26716259 - L1MC4 LINE L1 -143 7899 7404 1860 221 60 97 chr3 191321114 191321353 -26715805 - L1MC4 LINE L1 -638 7404 7158 1367 184 78 14 chr3 191321353 191321635 -26715523 - AluJo SINE Alu -12 300 1 1860 221 60 97 chr3 191321635 191322193 -26714965 - L1MC4 LINE L1 -884 7158 6636 228 350 0 15 chr3 191322205 191322342 -26714816 + (CATATA)n Simple_repeat Simple_repeat 3 137 0 * 296 242 34 28 chr3 191322252 191322430 -26714728 + (TA)n Simple_repeat Simple_repeat 2 180 0 268 231 13 15 chr3 191322467 191322554 -26714604 - L1MC4 LINE L1 -1462 6542 6448 477 283 110 97 chr3 191322895 191323439 -26713719 + L1MEd LINE L1 692 1242 -4877 326 276 200 31 chr3 191323696 191323921 -26713237 - L1ME4a LINE L1 -189 5932 5670 24 0 0 0 chr3 191324037 191324061 -26713097 + AT_rich Low_complexity Low_complexity 1 24 0 287 242 0 0 chr3 191324685 191324747 -26712411 - LTR30 LTR ERV1 -108 614 553 1706 162 308 16 chr3 191324749 191325243 -26711915 - pTR5 LTR ERV1 -406 2032 1395 237 250 0 0 chr3 191325243 191325295 -26711863 - LTR30 LTR ERV1 -670 52 1 422 103 15 0 chr3 191325295 191325363 -26711795 - pTR5 LTR ERV1 -1696 742 674 1901 154 68 27 chr3 191325680 191326089 -26711069 + L1MC2 LINE L1 5910 6335 -9 207 369 87 10 chr3 191326984 191327087 -26710071 + L2 LINE L2 3153 3263 -9 22 70 0 0 chr3 191327150 191327193 -26709965 + AT_rich Low_complexity Low_complexity 1 43 0 315 0 0 0 chr3 191327527 191327562 -26709596 + (GA)n Simple_repeat Simple_repeat 1 35 0 1516 132 0 25 chr3 191327726 191327961 -26709197 - AluSq SINE Alu -84 229 1 22 35 0 0 chr3 191327975 191328004 -26709154 + AT_rich Low_complexity Low_complexity 1 29 0 1007 105 0 0 chr3 191328133 191328266 -26708892 + AluSg/x SINE Alu 167 299 -13 1416 47 0 0 chr3 191328926 191329095 -26708063 + AluY SINE Alu 131 299 -12 2093 118 3 0 chr3 191329299 191329588 -26707570 - AluSg1 SINE Alu -11 298 9 771 296 14 0 chr3 191329745 191329965 -26707193 - MIR SINE MIR -25 237 15 200 143 24 0 chr3 191331533 191331575 -26705583 + (CCTA)n Simple_repeat Simple_repeat 2 44 0 273 324 148 7 chr3 191333528 191333670 -26703488 + MIR SINE MIR 52 213 -49 896 177 0 0 chr3 191333867 191334031 -26703127 - L1MA7 LINE L1 -370 5921 5758 257 177 48 0 chr3 191334034 191334096 -26703062 + L1MA7 LINE L1 5956 6020 -271 907 202 27 5 chr3 191334104 191334327 -26702831 + L1MA7 LINE L1 6064 6291 0 22 0 0 0 chr3 191334916 191334938 -26702220 + AT_rich Low_complexity Low_complexity 1 22 0 2165 100 33 0 chr3 191335029 191335330 -26701828 + AluY SINE Alu 1 311 0 25 0 0 0 chr3 191335838 191335863 -26701295 + AT_rich Low_complexity Low_complexity 1 25 0 33 80 0 0 chr3 191337380 191337455 -26699703 + AT_rich Low_complexity Low_complexity 1 75 0 1660 120 11 11 chr3 191337719 191337985 -26699173 - L1P5 LINE L1 -488 5666 5401 464 342 174 6 chr3 191337985 191338324 -26698834 + L3 LINE CR1 674 1069 -508 671 202 0 0 chr3 191338362 191338486 -26698672 - L1ME1 LINE L1 -7 6159 6036 * 1075 230 32 4 chr3 191338483 191338735 -26698423 - L1M1 LINE L1 -7290 275 17 216 0 0 0 chr3 191338850 191338874 -26698284 + (CA)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chr3 191338895 191338918 -26698240 + AT_rich Low_complexity Low_complexity 1 23 0 1476 205 0 20 chr3 191339555 191339848 -26697310 - AluJo SINE Alu -25 287 1 192 97 0 0 chr3 191339851 191339882 -26697276 + (TTG)n Simple_repeat Simple_repeat 2 32 0 206 301 87 48 chr3 191340088 191340191 -26696967 - L2 LINE L2 -15 3298 3192 226 248 69 50 chr3 191344732 191344833 -26692325 - L1ME4a LINE L1 -28 6093 5991 333 202 12 24 chr3 191344961 191345045 -26692113 + L1MC4 LINE L1 7960 8042 0 279 0 0 0 chr3 191345161 191345192 -26691966 + (TG)n Simple_repeat Simple_repeat 2 32 0 1393 276 91 2 chr3 191345282 191345745 -26691413 + L1ME2 LINE L1 5486 5989 -175 243 354 0 0 chr3 191347139 191347266 -26689892 + T-rich Low_complexity Low_complexity 1 127 0 231 150 0 0 chr3 191347630 191347670 -26689488 + MADE1 DNA Mariner 1 40 -40 314 243 19 78 chr3 191348881 191348984 -26688174 + MIR SINE MIR 58 154 -108 713 188 7 7 chr3 191348994 191349132 -26688026 + MLT1A2 LTR MaLR 1 138 -227 1859 183 32 29 chr3 191349132 191349690 -26687468 - MLT2A2 LTR ERVL 0 554 1 846 249 4 46 chr3 191349690 191349930 -26687228 + MLT1A2 LTR MaLR 145 374 0 1184 255 131 14 chr3 191350569 191351004 -26686154 + L2 LINE L2 2392 2877 -437 397 310 70 52 chr3 191351013 191351284 -26685874 + L2 LINE L2 3033 3308 -5 21 0 0 0 chr3 191353122 191353143 -26684015 + AT_rich Low_complexity Low_complexity 1 21 0 461 326 92 26 chr3 191353744 191354017 -26683141 + MLT1K LTR MaLR 40 330 -258 242 311 123 8 chr3 191354036 191354158 -26683000 + MLT1L LTR MaLR 422 557 -58 2256 84 0 28 chr3 191354200 191354520 -26682638 - AluY SINE Alu 0 311 1 44 70 0 0 chr3 191355023 191355109 -26682049 + AT_rich Low_complexity Low_complexity 1 86 0 248 291 13 0 chr3 191356502 191356581 -26680577 + (CATATA)n Simple_repeat Simple_repeat 1 80 0 250 267 106 44 chr3 191356897 191357077 -26680081 + L1ME4a LINE L1 5927 6117 -4 364 255 217 19 chr3 191357829 191358092 -26679066 - L1ME4a LINE L1 -4 6117 5803 655 307 107 6 chr3 191358770 191358899 -26678259 - HAL1 LINE L1 -604 1903 1788 180 0 0 0 chr3 191358899 191358919 -26678239 + (TA)n Simple_repeat Simple_repeat 2 21 0 655 307 107 6 chr3 191358919 191359108 -26678050 - HAL1 LINE L1 -719 1788 1553 434 365 57 29 chr3 191359235 191359303 -26677855 - HAL1 LINE L1 -2101 406 341 325 19 463 0 chr3 191359303 191359357 -26677801 - MADE1 DNA Mariner -1 79 1 434 365 57 29 chr3 191359357 191359672 -26677486 - HAL1 LINE L1 -2166 341 12 37 79 0 24 chr3 191360145 191360271 -26676887 + AT_rich Low_complexity Low_complexity 1 123 0 1742 172 3 20 chr3 191360389 191360685 -26676473 - AluJb SINE Alu -21 291 1 403 325 72 0 chr3 191360686 191360852 -26676306 - MIR SINE MIR -4 258 81 981 152 0 13 chr3 191360909 191361067 -26676091 - FRAM SINE Alu -22 154 1 267 303 106 23 chr3 191361654 191361786 -26675372 + MIR SINE MIR 113 255 -7 1566 166 15 6 chr3 191361810 191362135 -26675023 + L1M1 LINE L1 2271 2598 -4967 22 0 0 0 chr3 191362494 191362516 -26674642 + AT_rich Low_complexity Low_complexity 1 22 0 860 111 20 40 chr3 191362576 191362743 -26674415 + MLT1B LTR MaLR 12 171 -203 32 57 0 0 chr3 191363221 191363274 -26673884 + AT_rich Low_complexity Low_complexity 1 53 0 250 356 42 8 chr3 191364319 191364437 -26672721 - L2 LINE L2 0 3272 3151 839 275 12 25 chr3 191364442 191364682 -26672476 - MIR SINE MIR -21 241 5 489 263 12 56 chr3 191364982 191365376 -26671782 - MLT1K LTR MaLR -1 587 86 324 316 84 63 chr3 191365423 191365660 -26671498 - L2 LINE L2 -857 2457 2216 248 273 93 40 chr3 191365742 191365892 -26671266 - L2 LINE L2 -1282 2032 1875 1167 216 76 112 chr3 191365993 191366054 -26671104 + MLT2B1 LTR ERVL 1 63 -457 357 62 0 0 chr3 191366054 191366102 -26671056 + (TG)n Simple_repeat Simple_repeat 2 49 0 1167 216 76 112 chr3 191366102 191366567 -26670591 + MLT2B1 LTR ERVL 63 508 -12 510 174 215 0 chr3 191366576 191366697 -26670461 + MLT-int LTR MaLR 1461 1607 -128 5694 130 19 0 chr3 191366752 191368043 -26669115 - L1PA15 LINE L1 -2 6163 4856 521 153 23 84 chr3 191368057 191368188 -26668970 + MLT1B-int LTR MaLR 1607 1729 -6 642 237 71 11 chr3 191368193 191368360 -26668798 + MLT1B LTR MaLR 1 157 -233 635 46 11 0 chr3 191368360 191368447 -26668711 + (TC)n Simple_repeat Simple_repeat 1 88 0 642 237 71 11 chr3 191368447 191368574 -26668584 + MLT1B LTR MaLR 157 379 -11 221 328 101 25 chr3 191368604 191368723 -26668435 + MIR SINE MIR 131 258 -4 859 134 8 0 chr3 191368980 191369107 -26668051 + FRAM SINE Alu 37 164 -12 232 250 160 14 chr3 191369167 191369311 -26667847 + MLT1B LTR MaLR 370 534 -8 216 0 0 0 chr3 191369995 191370019 -26667139 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2230 101 0 3 chr3 191371253 191371549 -26665609 - AluSq SINE Alu -18 295 1 2622 153 7 12 chr3 191371702 191372128 -26665030 - MSTB LTR MaLR -2 424 1 2208 123 0 0 chr3 191372665 191372967 -26664191 + AluSq SINE Alu 7 308 -5 2175 133 8 65 chr3 191373507 191373679 -26663479 - THE1C LTR MaLR 0 375 195 2282 52 7 0 chr3 191373679 191373967 -26663191 - L1PA3 LINE L1 -3 6152 5863 2175 133 8 65 chr3 191373967 191374192 -26662966 - THE1C LTR MaLR -180 195 1 270 328 193 0 chr3 191374376 191374547 -26662611 - MIR SINE MIR 0 262 59 533 289 159 0 chr3 191374584 191374785 -26662373 + MIR SINE MIR 30 262 0 1816 192 10 52 chr3 191375061 191375468 -26661690 + MLT1B LTR MaLR 1 390 0 268 227 68 34 chr3 191375481 191375569 -26661589 - MIR SINE MIR -109 153 63 1269 221 29 16 chr3 191375785 191376092 -26661066 + AluJo SINE Alu 1 311 -1 24 0 0 0 chr3 191376226 191376250 -26660908 + AT_rich Low_complexity Low_complexity 1 24 0 734 223 31 31 chr3 191377081 191377274 -26659884 - MER3 DNA MER1_type 0 209 17 249 315 0 33 chr3 191378741 191378833 -26658325 - MER5B DNA MER1_type 0 178 90 256 246 49 107 chr3 191379342 191379464 -26657694 - LTR67 LTR ERVL -15 542 428 21 0 0 0 chr3 191379804 191379825 -26657333 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr3 191381366 191381408 -26655750 + AT_rich Low_complexity Low_complexity 1 42 0 3170 164 11 55 chr3 191381456 191382096 -26655062 - LTR9 LTR ERV1 0 612 1 2433 133 32 0 chr3 191382282 191382658 -26654500 - MSTC LTR MaLR 0 428 41 3728 141 19 0 chr3 191382666 191383260 -26653898 - MER39B LTR ERV1 -48 605 1 284 71 95 0 chr3 191383260 191383301 -26653857 - MSTC LTR MaLR -383 45 1 532 358 83 26 chr3 191383890 191384108 -26653050 + L3 LINE CR1 872 1076 -501 2896 13 0 0 chr3 191384108 191384423 -26652735 - AluYb8 SINE Alu -3 315 1 532 358 83 26 chr3 191384423 191384709 -26652449 + L3 LINE CR1 1076 1405 -172 1697 204 96 5 chr3 191385300 191385727 -26651431 + MLT1C LTR MaLR 1 466 -1 28 29 0 0 chr3 191386016 191386051 -26651107 + AT_rich Low_complexity Low_complexity 1 35 0 568 239 26 103 chr3 191386974 191387208 -26649950 + MER20 DNA MER1_type 4 219 0 1498 175 178 19 chr3 191387340 191387755 -26649403 - LTR10A LTR ERV1 -61 548 13 209 182 0 0 chr3 191439543 191439576 -26597582 + (CA)n Simple_repeat Simple_repeat 2 34 0 231 36 0 0 chr3 191439659 191439687 -26597471 + (TG)n Simple_repeat Simple_repeat 1 28 0 324 240 13 0 chr3 191439726 191439801 -26597357 - MER117 DNA MER1_type -115 82 7 2164 120 3 0 chr3 191439879 191440188 -26596970 + AluSx SINE Alu 1 310 -2 2064 147 64 43 chr3 191440855 191441278 -26595880 + MSTB1 LTR MaLR 1 432 0 24 32 0 0 chr3 191442152 191442183 -26594975 + AT_rich Low_complexity Low_complexity 1 31 0 2489 51 0 0 chr3 191442782 191443076 -26594082 - AluY SINE Alu -2 309 16 21 36 0 0 chr3 191443547 191443575 -26593583 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr3 191443702 191443725 -26593433 + AT_rich Low_complexity Low_complexity 1 23 0 336 235 62 0 chr3 191443901 191443982 -26593176 - MIR SINE MIR -58 204 119 448 294 34 104 chr3 191444713 191445097 -26592061 + L2 LINE L2 2953 3309 -4 347 322 23 23 chr3 191445514 191445688 -26591470 - L1ME3A LINE L1 -4 6166 5993 2449 63 0 0 chr3 191446082 191446383 -26590775 - AluY SINE Alu -10 301 1 654 238 137 16 chr3 191446759 191447007 -26590151 - L1ME3A LINE L1 -314 5856 5579 599 287 103 84 chr3 191447018 191447423 -26589735 - MER110 LTR ERV1 -1 490 93 313 323 133 28 chr3 191447671 191447919 -26589239 - L1ME3A LINE L1 -772 5374 5101 492 258 59 27 chr3 191448135 191448356 -26588802 - L1ME3A LINE L1 -1302 4844 4617 200 348 110 8 chr3 191448571 191448689 -26588469 - MIR3 SINE MIR -21 187 58 429 351 42 56 chr3 191448859 191449341 -26587817 - L2 LINE L2 -12 3260 2800 348 316 146 35 chr3 191449850 191450138 -26587020 - L1MC4 LINE L1 -188 7854 7535 242 227 15 15 chr3 191450160 191450226 -26586932 - L1MC5 LINE L1 -566 7395 7330 294 274 36 0 chr3 191450469 191450553 -26586605 - MLT1I LTR MaLR -6 403 317 497 304 27 22 chr3 191450625 191450809 -26586349 - MLT1I LTR MaLR -194 215 31 333 77 0 0 chr3 191450891 191450943 -26586215 - L1PA16 LINE L1 -17 6149 6098 204 253 101 25 chr3 191451821 191451900 -26585258 + MIR SINE MIR 100 184 -78 34 42 0 0 chr3 191451900 191451948 -26585210 + AT_rich Low_complexity Low_complexity 1 48 0 1115 221 64 71 chr3 191453021 191453414 -26583744 - MLT1B LTR MaLR 0 390 1 1751 196 104 71 chr3 191453514 191454106 -26583052 + L1MB8 LINE L1 5565 6177 -1 311 272 98 0 chr3 191454483 191454575 -26582583 + MIR SINE MIR 47 147 -115 559 266 84 7 chr3 191454979 191455133 -26582025 - MLT1H LTR MaLR -383 166 1 21 0 0 0 chr3 191456062 191456083 -26581075 + AT_rich Low_complexity Low_complexity 1 21 0 871 228 32 11 chr3 191458371 191458560 -26578598 + MLT1A1 LTR MaLR 173 365 0 7073 54 7 0 chr3 191459461 191460511 -26576647 - L1PA7 LINE L1 -2 6152 5096 1522 74 0 0 chr3 191460511 191460713 -26576445 + L1PA7 LINE L1 4897 5098 -1048 260 312 75 19 chr3 191460851 191460989 -26576169 - MIR3 SINE MIR -67 141 15 2021 133 10 7 chr3 191461317 191461626 -26575532 + AluSx SINE Alu 1 310 -2 288 342 17 8 chr3 191461680 191461797 -26575361 - L2 LINE L2 0 3313 3196 360 134 67 0 chr3 191461871 191462005 -26575153 + (TA)n Simple_repeat Simple_repeat 2 144 0 342 317 94 46 chr3 191462149 191462577 -26574581 - L2 LINE L2 -179 3134 2658 335 169 0 91 chr3 191462906 191462983 -26574175 - AluJ/FLAM SINE Alu -226 76 7 1854 171 3 0 chr3 191463161 191463470 -26573688 + AluJb SINE Alu 1 310 -2 1231 122 0 21 chr3 191463555 191463744 -26573414 - AluSg/x SINE Alu -7 305 121 243 0 0 0 chr3 191463947 191463974 -26573184 + (T)n Simple_repeat Simple_repeat 1 27 0 251 134 45 10 chr3 191464448 191464628 -26572530 + AluJo SINE Alu 55 319 0 466 136 23 11 chr3 191464881 191464969 -26572189 + MER20 DNA MER1_type 5 93 -126 334 0 0 0 chr3 191465100 191465143 -26572015 + L1PA2 LINE L1 6111 6153 -2 311 253 89 0 chr3 191465331 191465410 -26571748 + L2 LINE L2 2686 2771 -543 1752 202 34 3 chr3 191465473 191465825 -26571333 - MLT1A1 LTR MaLR -2 363 1 26 0 0 0 chr3 191465994 191466020 -26571138 + AT_rich Low_complexity Low_complexity 1 26 0 463 298 109 13 chr3 191466258 191466764 -26570394 + L1MEd LINE L1 1131 1709 -781 398 295 71 76 chr3 191467099 191467492 -26569666 + L1MEd LINE L1 2183 2573 -3556 324 371 23 23 chr3 191467827 191467959 -26569199 + MIR3 SINE MIR 28 159 -49 190 222 0 0 chr3 191468521 191468557 -26568601 + L2 LINE L2 3266 3301 -12 190 128 0 26 chr3 191469104 191469143 -26568015 - MIR SINE MIR -124 138 101 27 29 0 0 chr3 191470655 191470689 -26566469 + AT_rich Low_complexity Low_complexity 1 34 0 830 283 103 4 chr3 191471403 191471636 -26565522 + MIR SINE MIR 7 262 0 21 0 0 0 chr3 191472010 191472031 -26565127 + AT_rich Low_complexity Low_complexity 1 21 0 710 271 93 106 chr3 191472110 191472508 -26564650 + LTR16C LTR ERVL 97 489 -2 21 0 0 0 chr3 191473949 191473970 -26563188 + AT_rich Low_complexity Low_complexity 1 21 0 2725 128 21 0 chr3 191475237 191475658 -26561500 + MER57B LTR ERV1 1 430 -4 339 85 0 0 chr3 191476276 191476323 -26560835 + (TA)n Simple_repeat Simple_repeat 1 47 0 24 0 0 0 chr3 191476586 191476610 -26560548 + AT_rich Low_complexity Low_complexity 1 24 0 399 245 92 18 chr3 191477056 191477219 -26559939 + MIR SINE MIR 85 259 -3 228 231 15 31 chr3 191477304 191477369 -26559789 + MIR SINE MIR 156 219 -43 29 0 0 0 chr3 191477839 191477868 -26559290 + AT_rich Low_complexity Low_complexity 1 29 0 1952 211 101 33 chr3 191478008 191478611 -26558547 - LTR48B LTR ERV1 0 644 1 1490 86 9 14 chr3 191478708 191478929 -26558229 + L1PA10 LINE L1 5939 6158 -10 2235 124 25 25 chr3 191479055 191479419 -26557739 - THE1B LTR MaLR 0 364 1 10942 105 10 14 chr3 191479419 191480130 -26557028 - THE1B-int LTR MaLR 0 1580 867 2333 88 0 10 chr3 191480130 191480435 -26556723 + AluY SINE Alu 1 302 -9 10942 105 10 14 chr3 191480435 191481309 -26555849 - THE1B-int LTR MaLR -713 867 2 2024 124 51 25 chr3 191481310 191481665 -26555493 - THE1B LTR MaLR 0 364 1 21 36 0 0 chr3 191482140 191482168 -26554990 + AT_rich Low_complexity Low_complexity 1 28 0 2297 154 86 22 chr3 191482280 191482734 -26554424 - LTR44 LTR ERV1 -36 483 1 243 0 0 0 chr3 191483574 191483601 -26553557 + (T)n Simple_repeat Simple_repeat 1 27 0 2080 129 3 7 chr3 191484101 191484404 -26552754 - AluSx SINE Alu -10 302 1 339 189 38 57 chr3 191485128 191485234 -26551924 + U13 snRNA snRNA 1 104 0 247 273 68 23 chr3 191485496 191485584 -26551574 - L2 LINE L2 -1 3312 3221 1283 291 121 7 chr3 191485792 191486232 -26550926 - L2 LINE L2 -1020 2294 1805 3355 146 28 2 chr3 191486242 191486782 -26550376 + MER41C LTR ERV1 1 554 0 252 247 165 10 chr3 191486970 191487067 -26550091 - L2 LINE L2 -1785 1529 1418 319 276 106 8 chr3 191487094 191487217 -26549941 - L2 LINE L2 -2004 1310 1176 299 185 74 25 chr3 191487235 191487316 -26549842 - MER39 LTR ERV1 0 707 623 1156 141 21 39 chr3 191487316 191487846 -26549312 - MER4A LTR ERV1 0 664 1 949 182 56 128 chr3 191487846 191487879 -26549279 - MER39 LTR ERV1 -81 626 592 251 27 0 27 chr3 191487879 191487916 -26549242 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2452 32 0 0 chr3 191487918 191488200 -26548958 - AluY SINE Alu -29 282 1 949 182 56 128 chr3 191488200 191488503 -26548655 - MER39 LTR ERV1 -116 591 138 2240 86 0 17 chr3 191488503 191488804 -26548354 - AluSq SINE Alu -17 296 1 949 182 56 128 chr3 191488804 191488933 -26548225 - MER39 LTR ERV1 -569 138 1 225 352 48 16 chr3 191488933 191489058 -26548100 - L2 LINE L2 -2158 1156 1028 1047 264 150 17 chr3 191489073 191489494 -26547664 - L2 LINE L2 -2244 1070 594 393 382 7 0 chr3 191489508 191489652 -26547506 - L2 LINE L2 -2860 454 310 1589 146 75 7 chr3 191490888 191491169 -26545989 + MER2 DNA MER2_type 1 300 -45 1103 143 34 0 chr3 191492366 191492541 -26544617 + MER2 DNA MER2_type 27 207 -138 1296 239 0 7 chr3 191494329 191494605 -26542553 + AluJo SINE Alu 3 276 -36 717 155 0 0 chr3 191494617 191494746 -26542412 + G-rich Low_complexity Low_complexity 5 133 0 1025 196 106 85 chr3 191495250 191495638 -26541520 - MSTD LTR MaLR 0 396 1 363 305 60 21 chr3 191495917 191496137 -26541021 - MIR3 SINE MIR -36 226 3 189 213 0 0 chr3 191496302 191496349 -26540809 + CT-rich Low_complexity Low_complexity 3 49 0 22 0 0 0 chr3 191496998 191497020 -26540138 + AT_rich Low_complexity Low_complexity 1 22 0 193 386 40 10 chr3 191497472 191497573 -26539585 - MIR SINE MIR -78 130 27 225 337 0 12 chr3 191498015 191498098 -26539060 - L2 LINE L2 -3 3310 3229 342 263 38 0 chr3 191498230 191498310 -26538848 - L2 LINE L2 -45 3268 3186 281 336 137 0 chr3 191499545 191499691 -26537467 - MER5A DNA MER1_type -14 175 10 830 214 82 0 chr3 191500077 191500259 -26536899 - MIR SINE MIR -59 203 7 745 337 127 5 chr3 191501484 191501885 -26535273 + L3 LINE CR1 842 1291 -286 3825 171 34 14 chr3 191501991 191502724 -26534434 + L1PB4 LINE L1 5402 6149 -7 397 199 7 27 chr3 191502815 191502961 -26534197 + (TATATG)n Simple_repeat Simple_repeat 2 144 0 202 365 135 0 chr3 191503093 191503263 -26533895 + L3 LINE CR1 1284 1476 -101 210 304 39 59 chr3 191503304 191503406 -26533752 + MIR SINE MIR 70 169 -93 288 263 83 77 chr3 191503585 191503741 -26533417 - L2 LINE L2 -46 3267 3111 29 47 0 0 chr3 191504284 191504327 -26532831 + AT_rich Low_complexity Low_complexity 1 43 0 188 274 257 9 chr3 191505039 191505152 -26532006 - L2 LINE L2 -21 3292 3152 2367 86 0 0 chr3 191505266 191505569 -26531589 - AluSg SINE Alu -7 303 1 189 184 26 0 chr3 191506223 191506261 -26530897 + MIR3 SINE MIR 157 195 -13 2144 188 68 29 chr3 191506712 191508040 -26529118 - L1MC2 LINE L1 -92 6252 4873 242 228 18 0 chr3 191508223 191508280 -26528878 + MIR SINE MIR 86 143 -119 2118 68 7 4 chr3 191508570 191508888 -26528270 + AluY SINE Alu 1 319 0 200 165 13 51 chr3 191509861 191509940 -26527218 + (TTTAA)n Simple_repeat Simple_repeat 1 76 0 457 285 145 34 chr3 191511508 191511743 -26525415 - MIR SINE MIR 0 262 2 180 367 13 13 chr3 191512157 191512236 -26524922 + MIR3 SINE MIR 94 172 -36 669 120 30 0 chr3 191513325 191513425 -26523733 + U6 snRNA snRNA 2 104 -3 23 33 0 0 chr3 191513425 191513455 -26523703 + AT_rich Low_complexity Low_complexity 1 30 0 1968 138 0 7 chr3 191514345 191514635 -26522523 + AluSx SINE Alu 12 299 -13 347 289 42 54 chr3 191514941 191515107 -26522051 - L2 LINE L2 0 3313 3150 183 379 23 23 chr3 191515336 191515423 -26521735 - L2 LINE L2 -623 2691 2605 265 84 30 5 chr3 191515424 191515473 -26521685 - MLT2C2 LTR ERVL -2 395 357 312 148 0 0 chr3 191515477 191515538 -26521620 + (TG)n Simple_repeat Simple_repeat 2 62 0 1781 205 30 30 chr3 191515539 191515943 -26521215 - MLT2C2 LTR ERVL -60 404 1 268 338 74 14 chr3 191515945 191516093 -26521065 - L2 LINE L2 -729 2585 2429 1043 220 107 54 chr3 191517175 191517525 -26519633 - MLT1C LTR MaLR 0 467 99 504 77 0 0 chr3 191517525 191517590 -26519568 - THE1B LTR MaLR 0 364 300 272 50 125 0 chr3 191517690 191517730 -26519428 - THE1B LTR MaLR -319 45 1 305 256 44 22 chr3 191517730 191517820 -26519338 - MLT1C LTR MaLR -405 100 9 1473 278 118 32 chr3 191517884 191518510 -26518648 + LTR50 LTR ERVL 1 680 -115 25 31 0 0 chr3 191520212 191520244 -26516914 + AT_rich Low_complexity Low_complexity 1 32 0 785 223 100 23 chr3 191520307 191520607 -26516551 + MER33 DNA MER1_type 1 323 -1 266 295 39 13 chr3 191521152 191521230 -26515928 - L2 LINE L2 0 3272 3193 739 289 46 0 chr3 191522932 191523129 -26514029 + MIR SINE MIR 57 262 0 557 284 60 41 chr3 191524235 191524453 -26512705 - MIR SINE MIR -4 258 37 2118 196 83 33 chr3 191524460 191524975 -26512183 - MER34 LTR ERV1 -1 541 1 2422 60 0 25 chr3 191525627 191525941 -26511217 + AluY SINE Alu 1 306 -5 190 93 23 23 chr3 191525974 191526017 -26511141 + (CA)n Simple_repeat Simple_repeat 2 44 0 282 228 10 40 chr3 191526018 191526119 -26511039 + (CATATA)n Simple_repeat Simple_repeat 3 100 0 201 74 0 0 chr3 191527200 191527227 -26509931 + (CA)n Simple_repeat Simple_repeat 2 28 0 394 319 216 0 chr3 191527292 191527477 -26509681 + MIR SINE MIR 31 255 -7 1663 201 22 30 chr3 191528180 191528548 -26508610 - MLT1A1 LTR MaLR 0 365 1 9807 172 24 20 chr3 191528654 191531230 -26505928 - L1MA4 LINE L1 -4 6296 3732 252 0 0 0 chr3 191531230 191531258 -26505900 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 9807 172 24 20 chr3 191531258 191531432 -26505726 - L1MA4 LINE L1 -2568 3732 3560 273 29 0 0 chr3 191531432 191531466 -26505692 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 9807 172 24 20 chr3 191531466 191531893 -26505265 - L1MA4 LINE L1 -2740 3560 3095 22 0 0 0 chr3 191532137 191532159 -26504999 + AT_rich Low_complexity Low_complexity 1 22 0 192 250 0 23 chr3 191532777 191532821 -26504337 + L2 LINE L2 3230 3272 -41 21 36 0 0 chr3 191532965 191532993 -26504165 + AT_rich Low_complexity Low_complexity 1 28 0 2205 86 0 0 chr3 191533936 191534215 -26502943 + AluSc SINE Alu 1 279 -30 270 356 106 0 chr3 191534301 191534433 -26502725 - MIR SINE MIR -78 130 2 364 275 11 11 chr3 191534492 191534583 -26502575 - MIR3 SINE MIR -15 193 103 1116 76 23 6 chr3 191535373 191535545 -26501613 + (GAAA)n Simple_repeat Simple_repeat 3 177 0 245 309 0 0 chr3 191537107 191537175 -26499983 - MIR SINE MIR 0 262 195 302 328 43 0 chr3 191537849 191537965 -26499193 - MARNA DNA Mariner -359 227 107 814 268 54 17 chr3 191538210 191538449 -26498709 - MIR SINE MIR 0 262 15 216 171 0 40 chr3 191538597 191538749 -26498409 + (TTAAA)n Simple_repeat Simple_repeat 5 150 0 57 28 0 0 chr3 191538749 191538820 -26498338 + AT_rich Low_complexity Low_complexity 1 71 0 22 0 0 0 chr3 191539181 191539203 -26497955 + AT_rich Low_complexity Low_complexity 1 22 0 307 249 93 58 chr3 191541917 191542122 -26495036 - HAL1b LINE L1 -11 1337 1126 669 260 47 61 chr3 191542144 191542434 -26494724 - HAL1b LINE L1 -328 1020 727 188 35 35 0 chr3 191542434 191542463 -26494695 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2068 79 0 18 chr3 191542467 191542747 -26494411 - AluY SINE Alu -35 276 2 669 260 47 61 chr3 191542747 191542859 -26494299 - HAL1b LINE L1 -624 724 619 2213 114 7 0 chr3 191545267 191545565 -26491593 + AluSc SINE Alu 1 300 -9 32 26 0 0 chr3 191545586 191545625 -26491533 + AT_rich Low_complexity Low_complexity 1 39 0 360 0 0 0 chr3 191545663 191545703 -26491455 + (TG)n Simple_repeat Simple_repeat 2 41 0 3610 46 0 0 chr3 191546599 191547036 -26490122 + L1PA5 LINE L1 5683 6119 -35 2197 88 24 9 chr3 191547037 191547433 -26489725 - LTR7 LTR ERV1 -2 448 1 273 49 0 0 chr3 191547433 191547474 -26489684 + L1PA6 LINE L1 6114 6154 0 414 323 25 30 chr3 191548702 191548903 -26488255 - MIR SINE MIR -6 256 57 2032 118 3 3 chr3 191549016 191549320 -26487838 + AluSc SINE Alu 1 304 -5 353 293 48 48 chr3 191550524 191550794 -26486364 + L1MEd LINE L1 907 1176 -4943 25 51 0 0 chr3 191551336 191551375 -26485783 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr3 191551408 191551432 -26485726 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr3 191552670 191552692 -26484466 + AT_rich Low_complexity Low_complexity 1 22 0 1612 166 54 4 chr3 191552697 191552816 -26484342 + AluJo SINE Alu 1 113 -199 186 43 0 0 chr3 191552816 191552839 -26484319 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1612 166 54 4 chr3 191552839 191552996 -26484162 + AluJo SINE Alu 113 291 -21 234 0 0 0 chr3 191553635 191553661 -26483497 + (TG)n Simple_repeat Simple_repeat 2 27 0 22 56 0 0 chr3 191554842 191554878 -26482280 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 191554941 191554962 -26482196 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr3 191555615 191555643 -26481515 + AT_rich Low_complexity Low_complexity 1 28 0 186 217 22 0 chr3 191556276 191556322 -26480836 - MIR SINE MIR -7 255 209 246 396 117 24 chr3 191556759 191557128 -26480030 + L2 LINE L2 2571 2973 -341 983 209 87 54 chr3 191557554 191557923 -26479235 - L1MC5 LINE L1 -51 7910 7530 843 241 30 5 chr3 191557934 191558133 -26479025 + MER20 DNA MER1_type 16 219 0 806 231 50 69 chr3 191558134 191558510 -26478648 - L1MC5 LINE L1 -457 7504 7136 224 341 51 67 chr3 191561524 191561674 -26475484 - MIR SINE MIR -58 150 18 207 0 0 0 chr3 191562292 191562315 -26474843 + (T)n Simple_repeat Simple_repeat 1 23 0 232 203 203 0 chr3 191562329 191562388 -26474770 - MIR SINE MIR -118 144 74 23 0 0 0 chr3 191564650 191564673 -26472485 + AT_rich Low_complexity Low_complexity 1 23 0 863 171 30 120 chr3 191565078 191565312 -26471846 + AluJo SINE Alu 87 299 -13 22 56 0 0 chr3 191566217 191566253 -26470905 + AT_rich Low_complexity Low_complexity 1 36 0 414 295 23 39 chr3 191566513 191566642 -26470516 - L2 LINE L2 0 3272 3146 374 286 30 42 chr3 191566819 191566987 -26470171 - MIR SINE MIR -1 261 96 369 0 0 0 chr3 191567055 191567096 -26470062 + (TA)n Simple_repeat Simple_repeat 2 42 0 722 214 119 30 chr3 191567229 191567430 -26469728 - MLT2D LTR ERVL -195 219 1 403 306 94 6 chr3 191568311 191568481 -26468677 - MIR SINE MIR -21 241 57 242 299 167 7 chr3 191568627 191568771 -26468387 - MARNA DNA Mariner -287 299 133 2185 182 49 2 chr3 191569067 191569474 -26467684 + MSTB LTR MaLR 1 426 0 2617 209 52 34 chr3 191569820 191570475 -26466683 - MER76 LTR ERV 0 688 22 386 327 83 47 chr3 191570514 191570921 -26466237 + L1MEd LINE L1 1092 1513 -4903 362 187 11 0 chr3 191572616 191572707 -26464451 + (TA)n Simple_repeat Simple_repeat 1 92 0 322 280 123 46 chr3 191572894 191573155 -26464003 - L1 LINE L1 -1834 4312 4032 1432 233 71 87 chr3 191574339 191574932 -26462226 - MER77 LTR ERV1 -3 602 54 1905 126 14 0 chr3 191575151 191575428 -26461730 - AluSc SINE Alu -28 281 1 21 0 0 0 chr3 191577111 191577132 -26460026 + AT_rich Low_complexity Low_complexity 1 21 0 1384 227 75 16 chr3 191578132 191578506 -26458652 - MSTD LTR MaLR 0 396 1 327 25 0 0 chr3 191578829 191578869 -26458289 + (CA)n Simple_repeat Simple_repeat 1 40 0 33 0 0 0 chr3 191579125 191579158 -26458000 + AT_rich Low_complexity Low_complexity 1 33 0 263 264 0 22 chr3 191579166 191579257 -26457901 + L1MC4 LINE L1 6614 6702 -1340 231 302 0 0 chr3 191579192 191579278 -26457880 - L1MC4 LINE L1 -1343 6699 6614 * 195 184 0 0 chr3 191579278 191579316 -26457842 + (TA)n Simple_repeat Simple_repeat 2 39 0 239 267 47 0 chr3 191579316 191579402 -26457756 + L1MC4 LINE L1 6614 6703 -1339 232 183 0 17 chr3 191579413 191579473 -26457685 + L1MEd LINE L1 2006 2064 -4362 10806 158 40 37 chr3 191579576 191581714 -26455444 - Tigger2 DNA MER2_type -508 2210 66 212 0 36 0 chr3 191581986 191582014 -26455144 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 308 355 40 0 chr3 191582223 191582347 -26454811 - MIR3 SINE MIR -18 190 62 345 47 0 0 chr3 191582991 191583034 -26454124 + (TG)n Simple_repeat Simple_repeat 1 43 0 28 0 0 0 chr3 191583983 191584011 -26453147 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr3 191584193 191584218 -26452940 + AT_rich Low_complexity Low_complexity 1 25 0 1824 230 19 2 chr3 191585912 191586364 -26450794 - MER89 LTR ERV1 0 559 1 2262 85 0 0 chr3 191588376 191588685 -26448473 + AluSx SINE Alu 1 309 0 265 271 98 25 chr3 191590120 191590242 -26446916 - MIR SINE MIR -62 146 16 434 260 44 120 chr3 191590469 191590719 -26446439 - MIR SINE MIR 0 262 32 41974 36 25 1 chr3 191591219 191596055 -26441103 - L1PA3 LINE L1 -217 5938 934 198 0 0 0 chr3 191596055 191596077 -26441081 + (GGA)n Simple_repeat Simple_repeat 1 22 0 41974 36 25 1 chr3 191596077 191597034 -26440124 - L1PA3 LINE L1 -5221 934 2 3446 125 36 41 chr3 191597041 191597385 -26439773 + Tigger3(Golem) DNA MER2_type 2392 2733 -296 1822 163 10 3 chr3 191597385 191597686 -26439472 - AluJb SINE Alu -9 303 1 3446 125 36 41 chr3 191597686 191597982 -26439176 + Tigger3(Golem) DNA MER2_type 2733 3029 0 194 128 0 77 chr3 191598483 191598522 -26438636 + L2 LINE L2 3272 3307 -6 22 0 0 0 chr3 191599208 191599230 -26437928 + AT_rich Low_complexity Low_complexity 1 22 0 266 326 0 0 chr3 191599570 191599659 -26437499 - MER117 DNA MER1_type -106 91 3 27 0 0 0 chr3 191600552 191600579 -26436579 + AT_rich Low_complexity Low_complexity 1 27 0 263 319 0 0 chr3 191600696 191600765 -26436393 + LTR67 LTR ERVL 132 200 -357 28 71 0 0 chr3 191601045 191601101 -26436057 + AT_rich Low_complexity Low_complexity 1 56 0 374 345 111 29 chr3 191601962 191602348 -26434810 - MLT1L LTR MaLR -11 604 187 2213 89 0 22 chr3 191602592 191602908 -26434250 - AluY SINE Alu -2 309 1 25 75 0 0 chr3 191602931 191602984 -26434174 + AT_rich Low_complexity Low_complexity 1 53 0 208 290 14 29 chr3 191603096 191603165 -26433993 + L2 LINE L2 3203 3270 -2 1541 192 8 51 chr3 191604033 191604387 -26432771 - MER44D DNA MER2_type 0 609 1 25 0 0 0 chr3 191604884 191604909 -26432249 + AT_rich Low_complexity Low_complexity 1 25 0 1324 219 56 0 chr3 191604961 191605249 -26431909 - MER58B DNA MER1_type -26 315 12 199 293 106 65 chr3 191605294 191605417 -26431741 - MIR3 SINE MIR -46 162 35 * 269 247 108 11 chr3 191605394 191605487 -26431671 + MIR SINE MIR 90 191 -71 597 355 68 35 chr3 191605726 191605803 -26431355 - L2 LINE L2 -219 3053 2980 180 77 0 0 chr3 191605803 191605829 -26431329 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 597 355 68 35 chr3 191605829 191606256 -26430902 - L2 LINE L2 -292 2980 2532 216 358 21 47 chr3 191607284 191607474 -26429684 - L2 LINE L2 -955 2359 2175 348 356 163 15 chr3 191607509 191607969 -26429189 - L2 LINE L2 -1226 2088 1561 213 175 0 0 chr3 191608160 191608200 -26428958 + (CATA)n Simple_repeat Simple_repeat 1 40 0 449 310 102 0 chr3 191608780 191608996 -26428162 + L2 LINE L2 2378 2615 -699 259 299 94 92 chr3 191609011 191609426 -26427732 - LTR33A LTR ERVL -44 479 64 296 382 15 0 chr3 191609821 191609952 -26427206 - L2 LINE L2 -215 3057 2925 189 175 0 0 chr3 191610653 191610693 -26426465 + A-rich Low_complexity Low_complexity 1 40 0 331 298 81 16 chr3 191611348 191611472 -26425686 + MER94 DNA DNA 2 133 -1 801 255 35 17 chr3 191611923 191612154 -26425004 + L1M3c LINE L1 904 1138 -5003 963 136 7 0 chr3 191662166 191662320 -26374838 + L1MA1 LINE L1 6148 6302 0 407 294 89 50 chr3 191662876 191663184 -26373974 - L1ME3A LINE L1 -153 6017 5703 10779 89 29 5 chr3 191663330 191664897 -26372261 - HERVH LTR ERV1 -6108 1605 1 2448 77 157 5 chr3 191664899 191665288 -26371870 - LTR7 LTR ERV1 -2 448 1 461 160 0 0 chr3 191665477 191665552 -26371606 + LTR38-int LTR ERV1 3124 3198 -3478 319 39 58 0 chr3 191665560 191665612 -26371546 + (AATTG)n Simple_repeat Simple_repeat 1 55 0 327 203 0 0 chr3 191665656 191665720 -26371438 + LTR38-int LTR ERV1 1381 1444 -342 32 57 0 0 chr3 191666147 191666200 -26370958 + AT_rich Low_complexity Low_complexity 1 53 0 192 151 14 55 chr3 191666964 191667037 -26370121 + (CATATA)n Simple_repeat Simple_repeat 6 75 0 1220 241 240 14 chr3 191667244 191667613 -26369545 + L1MCa LINE L1 1258 1542 -5065 186 43 0 0 chr3 191667613 191667636 -26369522 + (GAA)n Simple_repeat Simple_repeat 2 24 0 1220 241 240 14 chr3 191667636 191667935 -26369223 + L1MCa LINE L1 1542 2176 -4431 2391 127 72 5 chr3 191667955 191668356 -26368802 + MSTA LTR MaLR 1 428 0 3274 153 22 0 chr3 191668356 191668905 -26368253 + MSTA-int LTR MaLR 1 561 -1090 24 32 0 0 chr3 191670046 191670077 -26367081 + AT_rich Low_complexity Low_complexity 1 31 0 39 0 0 0 chr3 191670640 191670679 -26366479 + AT_rich Low_complexity Low_complexity 1 39 0 3160 96 15 0 chr3 191670698 191671156 -26366002 + L1PA13 LINE L1 5699 6163 0 21 36 0 0 chr3 191671779 191671807 -26365351 + AT_rich Low_complexity Low_complexity 1 28 0 191 114 29 0 chr3 191671827 191671862 -26365296 + (TTA)n Simple_repeat Simple_repeat 2 37 0 3847 184 17 8 chr3 191671894 191672138 -26365020 - L1 LINE L1 -1786 4360 4120 2533 108 6 0 chr3 191672138 191672491 -26364667 + THE1A LTR MaLR 1 355 0 3847 184 17 8 chr3 191672491 191673016 -26364142 - L1 LINE L1 -2026 4120 3584 3157 167 5 18 chr3 191673014 191673500 -26363658 + L1MA8 LINE L1 5304 5782 -509 * 369 0 0 0 chr3 191673500 191673541 -26363617 + (CA)n Simple_repeat Simple_repeat 2 42 0 3157 167 5 18 chr3 191673541 191673654 -26363504 + L1MA8 LINE L1 5782 5895 -396 1647 106 51 0 chr3 191673849 191674086 -26363072 + AluSg1 SINE Alu 54 302 -7 335 298 16 32 chr3 191674500 191674688 -26362470 + L1ME3A LINE L1 4962 5146 -1000 525 98 0 12 chr3 191674694 191674776 -26362382 + Alu SINE Alu 219 299 -12 453 275 74 9 chr3 191674777 191675006 -26362152 + L1ME3A LINE L1 5130 5373 -773 2178 218 78 14 chr3 191675054 191675628 -26361530 + L1ME3A LINE L1 5552 6162 -8 23 54 0 0 chr3 191675704 191675741 -26361417 + AT_rich Low_complexity Low_complexity 1 37 0 4646 135 161 18 chr3 191676024 191676935 -26360223 + pTR5 LTR ERV1 984 2025 -413 365 204 31 20 chr3 191676935 191677033 -26360125 + LTR30 LTR ERV1 544 642 -80 1523 107 49 0 chr3 191677034 191677258 -26359900 + LTR12 LTR ERV1 480 714 0 1140 176 68 14 chr3 191677258 191677479 -26359679 + MSTA LTR MaLR 196 428 0 1956 249 45 25 chr3 191677577 191678562 -26358596 + L1MCa LINE L1 2242 3249 -3177 792 321 60 58 chr3 191678565 191679999 -26357159 + L1PA15-16 LINE L1 -645 740 -5464 * 1243 258 51 8 chr3 191679989 191680428 -26356730 + L1PA15-16 LINE L1 554 923 -5280 2222 189 14 7 chr3 191682251 191682674 -26354484 - MSTB LTR MaLR 0 426 1 207 310 88 0 chr3 191683115 191683228 -26353930 + L2 LINE L2 2927 3049 -223 404 290 76 7 chr3 191683324 191683469 -26353689 + MIR SINE MIR 3 157 -105 3356 220 49 58 chr3 191683504 191684956 -26352202 + L1MCb LINE L1 1 1428 -4851 1603 132 4 11 chr3 191685057 191685322 -26351836 + HERVH LTR ERV1 2730 2992 -4721 * 6144 76 14 2 chr3 191685308 191686152 -26351006 + HERVH LTR ERV1 3140 3993 -3720 1417 71 0 0 chr3 191686154 191686337 -26350821 + HERVH LTR ERV1 4488 4670 -3043 * 3780 149 0 2 chr3 191686334 191686910 -26350248 + HERVH LTR ERV1 4575 5149 -2564 1435 116 19 0 chr3 191686911 191687127 -26350031 + HERVH LTR ERV1 5600 5819 -1894 * 2303 100 48 13 chr3 191687125 191687504 -26349654 + HERVH LTR ERV1 7322 7713 0 389 78 0 0 chr3 191687504 191687555 -26349603 + LTR7 LTR ERV1 1 51 -399 426 185 0 0 chr3 191687606 191687741 -26349417 + (TCTA)n Simple_repeat Simple_repeat 4 138 0 2234 95 0 0 chr3 191688088 191688409 -26348749 + AluSx SINE Alu 1 321 0 208 204 157 82 chr3 191690491 191690638 -26346520 + MIR SINE MIR 93 250 -12 203 277 34 92 chr3 191691067 191691186 -26345972 + MIR SINE MIR 82 193 -69 35 41 0 0 chr3 191691692 191691741 -26345417 + AT_rich Low_complexity Low_complexity 1 49 0 369 0 0 0 chr3 191691877 191691918 -26345240 + (TG)n Simple_repeat Simple_repeat 1 41 0 23 33 0 0 chr3 191691933 191691963 -26345195 + AT_rich Low_complexity Low_complexity 1 30 0 282 73 0 0 chr3 191692311 191692352 -26344806 + (TG)n Simple_repeat Simple_repeat 2 42 0 237 394 106 11 chr3 191692477 191692657 -26344501 + L2 LINE L2 2881 3077 -195 826 304 125 46 chr3 191692671 191693168 -26343990 - MLT1H LTR MaLR -2 547 12 230 357 21 64 chr3 191693253 191693393 -26343765 + L2 LINE L2 3139 3272 0 5641 202 26 2 chr3 191694541 191695771 -26341387 + L1 LINE L1 3710 4968 -1178 7148 37 51 17 chr3 191696045 191696968 -26340190 - L1PA4 LINE L1 -1 6154 5220 34246 43 30 2 chr3 191697071 191701357 -26335801 + L1P LINE L1 4 4411 -1735 540 216 94 35 chr3 191701466 191701637 -26335521 + MSTD LTR MaLR 216 396 0 287 298 0 12 chr3 191701645 191701729 -26335429 + LTR33 LTR ERVL 431 513 -8 1546 341 80 20 chr3 191701773 191703015 -26334143 + L2 LINE L2 1986 3311 -2 245 279 0 15 chr3 191703839 191703907 -26333251 + MLT1H LTR MaLR 96 162 -387 331 347 32 16 chr3 191704756 191704880 -26332278 - L2 LINE L2 -10 3262 3137 257 340 124 40 chr3 191706840 191707266 -26329892 - L2 LINE L2 -1217 2097 1636 1744 237 64 7 chr3 191708074 191708497 -26328661 - L1ME3A LINE L1 -59 6111 5653 408 88 0 0 chr3 191708497 191708554 -26328604 + (TA)n Simple_repeat Simple_repeat 2 58 0 1744 237 64 7 chr3 191708554 191708620 -26328538 - L1ME3A LINE L1 -517 5653 5592 418 342 27 0 chr3 191708710 191708859 -26328299 + MIR SINE MIR 15 167 -95 202 222 22 0 chr3 191709524 191709569 -26327589 - L2 LINE L2 -5 3308 3263 205 288 0 0 chr3 191709936 191709995 -26327163 + MIR SINE MIR 186 244 -18 232 356 129 21 chr3 191710224 191710457 -26326701 - L2 LINE L2 -357 2957 2700 23 33 0 0 chr3 191710571 191710601 -26326557 + AT_rich Low_complexity Low_complexity 1 30 0 242 203 0 14 chr3 191710685 191710754 -26326404 + (TA)n Simple_repeat Simple_repeat 2 69 0 494 299 130 36 chr3 191711950 191712281 -26324877 + L1MEd LINE L1 1042 1403 -4969 1341 215 96 52 chr3 191712300 191712747 -26324411 + MLT1D LTR MaLR 39 505 0 311 212 10 0 chr3 191712887 191712962 -26324196 + L1M1 LINE L1 2883 3025 -4601 301 254 27 64 chr3 191713281 191713391 -26323767 + L1ME LINE L1 5666 5771 -399 2843 85 8 0 chr3 191713660 191714048 -26323110 + L1PA10 LINE L1 5768 6158 -10 23 0 0 0 chr3 191714178 191714201 -26322957 + AT_rich Low_complexity Low_complexity 1 23 0 2054 115 6 25 chr3 191714421 191714735 -26322423 + AluSg SINE Alu 1 308 -2 317 301 143 36 chr3 191714976 191715312 -26321846 + L1MEd LINE L1 2236 2628 -3884 32 43 0 0 chr3 191715583 191715629 -26321529 + AT_rich Low_complexity Low_complexity 1 46 0 630 0 0 0 chr3 191716149 191716219 -26320939 + (TC)n Simple_repeat Simple_repeat 1 70 0 975 208 0 0 chr3 191716225 191716403 -26320755 + MLT1B LTR MaLR 211 388 -2 1180 163 14 14 chr3 191716993 191717202 -26319956 + MER2 DNA MER2_type 3 211 -134 283 214 114 0 chr3 191717231 191717301 -26319857 + MER2 DNA MER2_type 268 345 0 527 260 59 26 chr3 191717306 191717579 -26319579 + L1MDb LINE L1 934 1216 -5180 504 165 312 77 chr3 191717555 191717895 -26319263 + L1ME2 LINE L1 4682 5101 -1305 * 2059 252 38 19 chr3 191717896 191718923 -26318235 + L1ME2 LINE L1 5172 6213 -211 393 313 75 67 chr3 191718966 191719432 -26317726 + L1M4 LINE L1 4672 5141 -1005 7402 20 1 0 chr3 191720027 191721674 -26315484 - L1PA3 LINE L1 -1 6154 4539 35 41 0 0 chr3 191722472 191722521 -26314637 + AT_rich Low_complexity Low_complexity 1 49 0 603 223 34 11 chr3 191723112 191723287 -26313871 + L1M4 LINE L1 4917 5095 -1051 24 77 0 0 chr3 191723773 191723825 -26313333 + AT_rich Low_complexity Low_complexity 1 52 0 350 313 95 48 chr3 191723902 191724384 -26312774 - L1M4 LINE L1 -2967 3179 2675 302 243 43 0 chr3 191726056 191726126 -26311032 + MER90 LTR ERV1 540 612 -2 358 306 35 21 chr3 191726390 191726534 -26310624 + MIR SINE MIR 39 184 -78 23 33 0 0 chr3 191728112 191728142 -26309016 + AT_rich Low_complexity Low_complexity 1 30 0 228 364 19 56 chr3 191728733 191728895 -26308263 + L3 LINE CR1 1402 1557 -20 28 29 0 0 chr3 191729740 191729775 -26307383 + AT_rich Low_complexity Low_complexity 1 35 0 250 374 16 59 chr3 191730429 191730616 -26306542 + L2 LINE L2 2872 3050 -263 1818 198 17 8 chr3 191730865 191731224 -26305934 + MLT1A1 LTR MaLR 4 365 0 223 231 0 19 chr3 191733444 191733496 -26303662 - L2 LINE L2 -3 3269 3219 663 316 48 19 chr3 191734304 191734737 -26302421 + L1ME1 LINE L1 1259 1704 -4692 1642 254 43 21 chr3 191734745 191735583 -26301575 + L1ME1 LINE L1 5032 5894 -341 613 261 106 5 chr3 191735594 191735782 -26301376 + MER58C DNA MER1_type 9 215 0 936 269 12 42 chr3 191735786 191736120 -26301038 + L1ME1 LINE L1 5908 6231 -4 2688 190 32 7 chr3 191736127 191736685 -26300473 + L1 LINE L1 4712 5283 -863 957 64 8 0 chr3 191736785 191736910 -26300248 + L1PA5 LINE L1 6021 6146 -8 261 146 0 0 chr3 191737087 191737135 -26300023 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 2332 74 3 3 chr3 191737140 191737439 -26299719 + AluY SINE Alu 1 299 -12 240 281 190 50 chr3 191737490 191737611 -26299547 + L3 LINE CR1 1263 1400 -177 1830 261 71 14 chr3 191737993 191738491 -26298667 - MLT1F1 LTR MaLR -1 566 31 21 0 0 0 chr3 191738639 191738660 -26298498 + AT_rich Low_complexity Low_complexity 1 21 0 258 370 22 29 chr3 191740362 191740500 -26296658 - MIR SINE MIR -94 168 32 241 356 42 8 chr3 191741729 191741847 -26295311 + MLT1J LTR MaLR 77 198 -313 252 371 0 0 chr3 191742140 191742229 -26294929 + MIR3 SINE MIR 109 197 -11 26 50 0 0 chr3 191742326 191742366 -26294792 + AT_rich Low_complexity Low_complexity 1 40 0 494 285 106 17 chr3 191742681 191742860 -26294298 + MIR SINE MIR 68 262 0 464 332 67 5 chr3 191743158 191743351 -26293807 - MIR SINE MIR -18 244 40 1995 156 24 16 chr3 191743851 191744223 -26292935 - THE1C LTR MaLR 0 375 1 21 36 0 0 chr3 191744764 191744792 -26292366 + AT_rich Low_complexity Low_complexity 1 28 0 233 264 35 46 chr3 191745096 191745183 -26291975 - L2 LINE L2 -43 3270 3185 31 26 0 0 chr3 191745190 191745228 -26291930 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr3 191745332 191745353 -26291805 + AT_rich Low_complexity Low_complexity 1 21 0 1539 114 92 37 chr3 191746144 191746416 -26290742 - THE1B LTR MaLR -77 287 1 11173 102 2 17 chr3 191746416 191748019 -26289139 - THE1B-int LTR MaLR 0 1580 1 2099 116 51 25 chr3 191748020 191748374 -26288784 - THE1B LTR MaLR -1 363 1 434 227 0 11 chr3 191748994 191749082 -26288076 - Tigger5 DNA MER2_type 0 2323 2237 318 189 0 0 chr3 191749093 191749146 -26288012 - Tigger5 DNA MER2_type -2269 54 2 619 251 117 56 chr3 191749758 191749989 -26287169 - MER45C DNA AcHobo -5 948 704 235 329 0 35 chr3 191750014 191750099 -26287059 - MER45C DNA AcHobo -871 82 1 * 300 301 11 0 chr3 191750098 191750191 -26286967 + MER94 DNA DNA 4 97 -37 383 227 11 23 chr3 191750329 191750417 -26286741 - Tigger5 DNA MER2_type 0 2323 2237 272 282 60 0 chr3 191750894 191751002 -26286156 - MLT1L LTR MaLR -345 243 124 6388 103 1 0 chr3 191751336 191752203 -26284955 - THE1A-int LTR MaLR -712 868 1 2639 88 6 3 chr3 191752203 191752557 -26284601 - THE1A LTR MaLR 0 355 1 22 0 0 0 chr3 191752562 191752584 -26284574 + AT_rich Low_complexity Low_complexity 1 22 0 521 134 31 39 chr3 191752603 191752730 -26284428 - L1MA6 LINE L1 -9 6291 6166 1464 174 11 4 chr3 191752730 191753005 -26284153 + L1MA6 LINE L1 5908 6184 -116 304 303 46 0 chr3 191753246 191753355 -26283803 + L1M4 LINE L1 2424 2537 -3609 286 237 191 20 chr3 191753369 191753521 -26283637 + L1M4 LINE L1 4565 4742 -1404 847 218 0 0 chr3 191753527 191753683 -26283475 - AluJb SINE Alu -23 289 134 502 262 59 26 chr3 191754070 191754391 -26282767 + L1M1 LINE L1 5237 5577 -598 368 246 127 36 chr3 191754488 191754598 -26282560 + L2 LINE L2 3189 3308 -5 28 61 0 0 chr3 191754642 191754691 -26282467 + AT_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chr3 191755034 191755059 -26282099 + AT_rich Low_complexity Low_complexity 1 25 0 3242 174 43 43 chr3 191755164 191755740 -26281418 + MER66B-int LTR ERV1 3256 3835 -2841 2290 60 0 7 chr3 191755740 191756049 -26281109 + AluY SINE Alu 1 307 0 3242 174 43 43 chr3 191756049 191756191 -26280967 + MER66B-int LTR ERV1 3834 3975 -2701 * 7495 130 11 5 chr3 191756172 191757280 -26279878 + MER66B-int LTR ERV1 5562 6675 -1 2763 174 12 4 chr3 191757281 191757763 -26279395 + MER66B LTR ERV1 1 486 0 23 68 0 0 chr3 191759040 191759084 -26278074 + AT_rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chr3 191759446 191759476 -26277682 + AT_rich Low_complexity Low_complexity 1 30 0 1591 112 5 0 chr3 191759591 191759815 -26277343 + AluSc SINE Alu 1 225 -84 380 331 56 46 chr3 191760046 191760330 -26276828 + HAL1 LINE L1 1050 1336 -1171 203 265 88 0 chr3 191760364 191760432 -26276726 - L2 LINE L2 0 3313 3240 329 266 15 74 chr3 191760439 191760642 -26276516 + HAL1 LINE L1 1374 1564 -943 1877 125 144 6 chr3 191760935 191761255 -26275903 - THE1B LTR MaLR 0 364 1 189 254 91 18 chr3 191762919 191762974 -26274184 + L3 LINE CR1 304 362 -1215 2482 229 38 11 chr3 191763314 191763848 -26273310 - MER68 LTR ERV1 -14 548 1 695 81 0 30 chr3 191763864 191763963 -26273195 + L1PA6 LINE L1 3 98 -6048 * 34760 57 3 6 chr3 191763961 191766621 -26270537 + L1PA6 LINE L1 847 3488 -2666 8194 52 1 0 chr3 191766621 191767586 -26269572 - LTR5 LTR ERVK -3 966 1 34760 57 3 6 chr3 191767586 191769924 -26267234 + L1PA6 LINE L1 3488 5831 -323 10813 232 40 14 chr3 191770024 191773497 -26263661 + L1PA12 LINE L1 2819 6288 -1296 3055 194 67 9 chr3 191773506 191774233 -26262925 + L1MC3 LINE L1 6875 7647 -138 1686 157 66 33 chr3 191774233 191774596 -26262562 - THE1C LTR MaLR 0 375 1 3055 194 67 9 chr3 191774596 191774614 -26262544 + L1MC3 LINE L1 7647 7663 -122 1898 225 18 58 chr3 191774614 191775112 -26262046 + MLT2B1 LTR ERVL 1 478 -42 279 0 0 0 chr3 191775119 191775176 -26261982 + (CA)n Simple_repeat Simple_repeat 1 88 0 279 0 0 0 chr3 191775176 191775207 -26261951 + (CA)n Simple_repeat Simple_repeat 2 32 0 5329 140 20 1 chr3 191775262 191776848 -26260310 + L1PA15 LINE L1 4573 6158 -7 476 172 0 21 chr3 191776881 191776974 -26260184 + L1MC3 LINE L1 7695 7785 0 305 267 22 11 chr3 191777013 191777103 -26260055 + MIR SINE MIR 172 262 0 333 224 230 15 chr3 191777571 191777758 -26259400 + MIR SINE MIR 13 249 -13 569 312 87 13 chr3 191779457 191779688 -26257470 - MIR SINE MIR 0 262 15 594 294 50 10 chr3 191780576 191780777 -26256381 + MIR SINE MIR 5 213 -49 268 303 131 10 chr3 191780827 191780926 -26256232 + L2 LINE L2 3160 3270 -2 1555 204 35 30 chr3 191780980 191781352 -26255806 + MLT1A2 LTR MaLR 1 374 0 31 44 0 0 chr3 191782467 191782512 -26254646 + AT_rich Low_complexity Low_complexity 1 45 0 1310 235 153 27 chr3 191782533 191782971 -26254187 + MLT1D LTR MaLR 13 505 0 492 314 162 57 chr3 191783340 191784014 -26253144 - L2 LINE L2 0 3313 2552 2583 178 4 23 chr3 191784056 191784105 -26253053 - MER88 LTR ERVL 0 464 416 2034 119 27 41 chr3 191784105 191784474 -26252684 - THE1B LTR MaLR 0 364 1 2583 178 4 23 chr3 191784474 191784897 -26252261 - MER88 LTR ERVL -48 416 1 2691 309 102 6 chr3 191784900 191785994 -26251164 - L2 LINE L2 -830 2484 1287 2881 231 55 19 chr3 191786003 191786805 -26250353 - L1MC4a LINE L1 -382 7426 6596 210 71 0 0 chr3 191786845 191786873 -26250285 + (TA)n Simple_repeat Simple_repeat 1 28 0 483 99 0 0 chr3 191786881 191786952 -26250206 + L1P LINE L1 4474 4544 -1602 583 104 21 14 chr3 191786953 191787097 -26250061 + (TA)n Simple_repeat Simple_repeat 2 146 0 814 239 60 33 chr3 191787097 191788017 -26249141 - L1MC4 LINE L1 -1190 6618 5752 919 365 20 3 chr3 191788165 191788518 -26248640 + MLT1I LTR MaLR 41 399 -10 1265 238 38 51 chr3 191788581 191788976 -26248182 - MLT1B LTR MaLR 0 390 1 25 31 0 0 chr3 191789265 191789297 -26247861 + AT_rich Low_complexity Low_complexity 1 32 0 284 253 40 0 chr3 191789400 191789475 -26247683 + MIR SINE MIR 120 197 -65 34 72 0 0 chr3 191790224 191790293 -26246865 + AT_rich Low_complexity Low_complexity 1 69 0 676 252 43 70 chr3 191791124 191792011 -26245147 + L1MC4 LINE L1 6450 7476 -566 253 304 43 43 chr3 191792422 191792537 -26244621 + MIR SINE MIR 49 163 -99 2128 125 0 3 chr3 191792542 191792839 -26244319 - AluSx SINE Alu -14 298 3 3205 141 8 0 chr3 191792839 191793343 -26243815 - L1PA16 LINE L1 -162 6004 5497 769 86 26 0 chr3 191793340 191793456 -26243702 + L1PA16 LINE L1 5364 5482 -684 * 242 330 69 62 chr3 191794334 191794622 -26242536 + L1MB7 LINE L1 598 887 -5655 1106 253 91 12 chr3 191794672 191795235 -26241923 + L1MB7 LINE L1 894 1626 -4916 1309 269 61 13 chr3 191795393 191795711 -26241447 + L1MB7 LINE L1 1680 2028 -4618 6968 62 1 1 chr3 191795711 191797247 -26239911 + L1PA7 LINE L1 4618 6152 -2 1309 269 61 13 chr3 191797247 191797385 -26239773 + L1MB7 LINE L1 2028 2158 -4488 2610 234 48 16 chr3 191797559 191798530 -26238628 + L1MB7 LINE L1 5636 6646 -16 1129 241 100 57 chr3 191798535 191798905 -26238253 + MLT1D LTR MaLR 1 386 -119 1468 266 40 17 chr3 191798905 191798984 -26238174 + L1MD1 LINE L1 4770 4846 -1300 845 238 114 47 chr3 191798984 191799412 -26237746 - MSTB2 LTR MaLR 0 457 1 1468 266 40 17 chr3 191799412 191799850 -26237308 + L1MD1 LINE L1 4846 5299 -847 2526 193 10 63 chr3 191799953 191800555 -26236603 + L1MD1 LINE L1 5665 6234 -8 1356 297 92 20 chr3 191800573 191801379 -26235779 + L1ME3A LINE L1 5188 6054 -116 269 278 11 0 chr3 191801386 191801476 -26235682 + L1ME3A LINE L1 6080 6170 0 23 54 0 0 chr3 191801760 191801797 -26235361 + AT_rich Low_complexity Low_complexity 1 37 0 369 318 134 35 chr3 191801888 191802290 -26234868 + L1M4 LINE L1 3205 3646 -2500 318 313 65 41 chr3 191802326 191802572 -26234586 + L1M4 LINE L1 4353 4604 -1542 657 129 0 0 chr3 191802687 191802788 -26234370 - MER41B LTR ERV1 -86 549 449 3242 108 9 73 chr3 191802798 191803374 -26233784 - L1PB1 LINE L1 -1 6150 5612 196 51 26 26 chr3 191805250 191805289 -26231869 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 243 0 0 0 chr3 191806943 191806970 -26230188 + (TG)n Simple_repeat Simple_repeat 2 28 0 1761 133 7 4 chr3 191807105 191807471 -26229687 + AluSq SINE Alu 37 403 0 205 222 93 0 chr3 191807573 191807627 -26229531 + MIR3 SINE MIR 121 179 -29 2412 56 3 10 chr3 191807901 191808207 -26228951 - AluY SINE Alu -6 305 2 194 59 88 0 chr3 191808234 191808268 -26228890 + A-rich Low_complexity Low_complexity 5 41 0 23 33 0 0 chr3 191809464 191809494 -26227664 + AT_rich Low_complexity Low_complexity 1 30 0 2160 186 70 5 chr3 191810840 191811280 -26225878 - L1PA16 LINE L1 -8 6860 6392 11034 245 38 19 chr3 191811380 191814570 -26222588 - L1PA16 LINE L1 -1380 5468 2253 2099 216 19 62 chr3 191814570 191815149 -26222009 + MLT2B3 LTR ERVL 1 554 0 11034 245 38 19 chr3 191815149 191815967 -26221191 - L1PA16 LINE L1 -4595 2253 1452 331 266 36 61 chr3 191817063 191817167 -26219991 - L1PA16 LINE L1 -6597 241 136 1227 218 44 27 chr3 191817167 191817461 -26219697 + AluJo SINE Alu 1 299 -3 331 266 36 61 chr3 191817461 191817565 -26219593 - L1PA16 LINE L1 -6702 136 2 2152 92 3 36 chr3 191817972 191818278 -26218880 + AluSx SINE Alu 1 296 -16 27 49 0 0 chr3 191818282 191818323 -26218835 + AT_rich Low_complexity Low_complexity 1 41 0 26 0 0 0 chr3 191818348 191818374 -26218784 + AT_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chr3 191818949 191818986 -26218172 + AT_rich Low_complexity Low_complexity 1 37 0 354 290 38 25 chr3 191819020 191819213 -26217945 - MER34 LTR ERV1 -341 366 8 198 0 0 0 chr3 191819213 191819235 -26217923 + (CA)n Simple_repeat Simple_repeat 1 22 0 1732 170 3 10 chr3 191819394 191819682 -26217476 + AluJb SINE Alu 1 286 -26 2608 190 33 36 chr3 191819833 191820449 -26216709 - MER44D DNA MER2_type 0 605 2 1730 190 50 0 chr3 191820465 191820786 -26216372 + MLT1A1-int LTR MaLR 1399 1735 0 1143 188 36 32 chr3 191820786 191821036 -26216122 + MLT1A1 LTR MaLR 1 251 -114 22 0 0 0 chr3 191821064 191821086 -26216072 + AT_rich Low_complexity Low_complexity 1 22 0 8443 137 0 60 chr3 191821093 191821922 -26215236 - L1PA10 LINE L1 -4 6164 5287 1867 169 0 0 chr3 191821922 191822217 -26214941 - AluSx SINE Alu -17 295 1 8443 137 0 60 chr3 191822217 191823750 -26213408 - L1PA10 LINE L1 -881 5287 3884 12089 206 19 14 chr3 191823751 191826015 -26211143 + L1P LINE L1 1258 3510 -2636 209 57 29 0 chr3 191826015 191826050 -26211108 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 12089 206 19 14 chr3 191826050 191826208 -26210950 + L1P LINE L1 3510 3695 -2451 198 0 0 0 chr3 191826208 191826230 -26210928 + (CAA)n Simple_repeat Simple_repeat 3 24 0 12089 206 19 14 chr3 191826230 191826305 -26210853 + L1P LINE L1 3695 3768 -2378 610 213 32 97 chr3 191826305 191826460 -26210698 + MLT1A1 LTR MaLR 247 365 0 684 189 53 0 chr3 191827089 191827221 -26209937 - MER5A DNA MER1_type -49 140 2 576 181 113 38 chr3 191827375 191827508 -26209650 + LTR40b LTR ERVL 320 462 0 207 0 0 0 chr3 191827715 191827738 -26209420 + (CA)n Simple_repeat Simple_repeat 2 24 0 24 0 0 0 chr3 191828531 191828555 -26208603 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr3 191828636 191828674 -26208484 + AT_rich Low_complexity Low_complexity 1 38 0 36 29 0 43 chr3 191828844 191828913 -26208245 + AT_rich Low_complexity Low_complexity 1 66 0 3257 185 42 27 chr3 191829929 191830641 -26206517 - L1MB3 LINE L1 -3 6180 5458 288 298 83 8 chr3 191830642 191830763 -26206395 - MIR SINE MIR -64 198 69 458 299 25 34 chr3 191831116 191831320 -26205838 + L2 LINE L2 3112 3313 0 21 36 0 0 chr3 191832420 191832448 -26204710 + AT_rich Low_complexity Low_complexity 1 28 0 722 189 31 0 chr3 191832527 191832654 -26204504 + MER20 DNA MER1_type 89 219 0 289 284 11 11 chr3 191832933 191833028 -26204130 + MIR SINE MIR 131 225 -37 189 333 0 0 chr3 191833066 191833126 -26204032 + MIR3 SINE MIR 105 164 -44 573 260 47 47 chr3 191833812 191834070 -26203088 + MER113 DNA MER1_type? 126 383 -138 28 79 0 0 chr3 191834071 191834134 -26203024 + AT_rich Low_complexity Low_complexity 1 63 0 550 230 61 14 chr3 191834234 191834382 -26202776 - MER5B DNA MER1_type -19 159 5 390 342 116 68 chr3 191834476 191835396 -26201762 + L3 LINE CR1 363 1326 -251 642 225 65 24 chr3 191836707 191836876 -26200282 + MIR SINE MIR 73 248 -14 201 229 0 0 chr3 191836882 191836917 -26200241 + (CTG)n Simple_repeat Simple_repeat 2 36 0 296 308 28 28 chr3 191837674 191837817 -26199341 + LTR67 LTR ERVL 413 555 -2 3250 229 43 24 chr3 191887916 191889124 -26148034 + L1M1 LINE L1 2263 3506 -4059 3118 203 64 21 chr3 191889096 191889898 -26147260 + L1M1 LINE L1 4574 5409 -2156 * 2451 59 0 7 chr3 191889898 191890201 -26146957 + AluY SINE Alu 1 301 -10 1115 233 31 4 chr3 191890201 191890493 -26146665 - L1MC/D LINE L1 -584 5582 5276 250 260 52 42 chr3 191891169 191891265 -26145893 + MER21-int LTR ERV1 2015 2111 -2080 273 276 204 0 chr3 191891616 191891797 -26145361 + L1ME LINE L1 5485 5702 -468 330 243 103 0 chr3 191893455 191893562 -26143596 - LTR16A LTR ERVL -5 445 328 2609 34 0 0 chr3 191894034 191894332 -26142826 - AluY SINE Alu -13 298 1 256 246 58 0 chr3 191894332 191894401 -26142757 + MIR SINE MIR 101 173 -89 21 0 0 0 chr3 191894687 191894708 -26142450 + AT_rich Low_complexity Low_complexity 1 21 0 220 293 193 28 chr3 191894825 191895006 -26142152 - MIR SINE MIR -50 212 2 2190 106 7 0 chr3 191896289 191896581 -26140577 - AluSg1 SINE Alu -11 298 5 2348 63 0 7 chr3 191897956 191898256 -26138902 + AluY SINE Alu 1 298 -13 187 305 85 24 chr3 191899243 191899325 -26137833 - MIR3 SINE MIR -11 197 111 24 0 0 0 chr3 191900544 191900568 -26136590 + AT_rich Low_complexity Low_complexity 1 24 0 691 316 35 4 chr3 191900700 191900928 -26136230 - MIR SINE MIR 0 262 28 1311 19 19 0 chr3 191901524 191901681 -26135477 - L1P2 LINE L1 -358 5797 5638 185 0 0 39 chr3 191901711 191901737 -26135421 + (TATG)n Simple_repeat Simple_repeat 4 28 0 398 79 111 0 chr3 191901740 191901803 -26135355 + L1PA5 LINE L1 6076 6145 -9 1035 237 95 25 chr3 191902226 191902585 -26134573 - MER63 DNA MER1_type -5 1055 672 1995 148 0 3 chr3 191903044 191903334 -26133824 + AluJb SINE Alu 3 291 -21 24 53 0 0 chr3 191904445 191904483 -26132675 + AT_rich Low_complexity Low_complexity 1 38 0 200 361 28 19 chr3 191906110 191906218 -26130940 + MIR3 SINE MIR 89 197 -11 323 178 0 14 chr3 191907304 191907377 -26129781 + GA-rich Low_complexity Low_complexity 2 73 0 2797 10 0 10 chr3 191908403 191908717 -26128441 + AluYa5 SINE Alu 1 311 0 819 295 73 19 chr3 191909263 191909676 -26127482 + L1MEc LINE L1 1636 2070 -4326 516 145 0 0 chr3 191909679 191909762 -26127396 + L1MC/D LINE L1 5498 5580 -779 813 223 5 47 chr3 191909772 191909987 -26127171 + L1MD2 LINE L1 6139 6344 -15 730 236 179 14 chr3 191910008 191910305 -26126853 + L1MEc LINE L1 2415 2760 -3455 738 283 38 5 chr3 191910310 191910522 -26126636 - MER58A DNA MER1_type 0 224 6 225 221 26 0 chr3 191910567 191910644 -26126514 + (TTA)n Simple_repeat Simple_repeat 3 81 0 1888 205 78 103 chr3 191910694 191911541 -26125617 - LTR1B LTR ERV1 0 826 1 445 276 26 31 chr3 191911542 191911770 -26125388 + L1MEc LINE L1 2846 3072 -3143 2746 186 26 33 chr3 191911968 191912228 -26124930 - L1P4 LINE L1 -564 5602 5342 2060 134 3 0 chr3 191912228 191912520 -26124638 - AluSp SINE Alu -16 297 5 2746 186 26 33 chr3 191912520 191913209 -26123949 - L1P4 LINE L1 -824 5342 4657 494 144 0 0 chr3 191913199 191913289 -26123869 - L1P LINE L1 -784 5382 5293 * 365 227 45 9 chr3 191913270 191913380 -26123778 - L1 LINE L1 -1466 4680 4567 * 381 192 0 0 chr3 191913440 191913513 -26123645 - L1P4 LINE L1 -1578 4568 4496 2039 222 37 21 chr3 191913513 191913919 -26123239 + L1MEc LINE L1 3975 4394 -1821 1932 144 6 19 chr3 191913919 191914231 -26122927 + AluSg SINE Alu 1 308 -2 2039 222 37 21 chr3 191914231 191914392 -26122766 + L1MEc LINE L1 4394 4551 -1664 317 336 52 0 chr3 191914411 191914527 -26122631 + L2 LINE L2 1502 1623 -1691 22 70 0 0 chr3 191915936 191915979 -26121179 + AT_rich Low_complexity Low_complexity 1 43 0 743 237 18 41 chr3 191916299 191916468 -26120690 - MER2 DNA MER2_type -180 165 1 50 83 0 0 chr3 191916483 191916579 -26120579 + AT_rich Low_complexity Low_complexity 1 96 0 26 0 0 0 chr3 191917548 191917574 -26119584 + AT_rich Low_complexity Low_complexity 1 26 0 1871 106 6 94 chr3 191917586 191917906 -26119252 - AluSq SINE Alu -21 292 1 207 148 33 131 chr3 191917910 191917971 -26119187 - MER5B DNA MER1_type -123 55 1 1067 226 26 22 chr3 191918709 191918939 -26118219 + MLT1E LTR MaLR 2 232 -361 856 260 72 0 chr3 191918947 191919155 -26118003 + MLT1E LTR MaLR 370 592 -1 581 80 4 73 chr3 191919335 191919613 -26117545 + (TA)n Simple_repeat Simple_repeat 1 258 0 519 108 0 57 chr3 191919636 191919793 -26117365 + (TA)n Simple_repeat Simple_repeat 2 149 0 2131 156 3 0 chr3 191919794 191920154 -26117004 + L1PB1 LINE L1 5783 6143 -8 224 271 43 14 chr3 191920196 191920266 -26116892 + L2 LINE L2 2748 2819 -495 447 344 77 36 chr3 191920333 191920696 -26116462 + L2 LINE L2 2936 3313 0 6196 113 23 6 chr3 191920770 191921769 -26115389 - L1MA3 LINE L1 0 6305 5290 2064 144 0 6 chr3 191922172 191922485 -26114673 + AluSx SINE Alu 2 312 0 497 280 146 28 chr3 191923080 191923401 -26113757 - L1ME4a LINE L1 -24 6097 5739 25 0 0 0 chr3 191923673 191923698 -26113460 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr3 191924389 191924412 -26112746 + AT_rich Low_complexity Low_complexity 1 23 0 229 225 0 38 chr3 191924506 191924586 -26112572 + CT-rich Low_complexity Low_complexity 4 80 0 385 336 30 15 chr3 191924767 191924898 -26112260 + L2 LINE L2 3139 3271 -1 264 303 13 0 chr3 191925878 191925954 -26111204 + MIR SINE MIR 64 140 -122 5495 211 42 8 chr3 191926664 191927832 -26109326 + L1PBa LINE L1 237 1444 -5419 1217 168 88 28 chr3 191927940 191928190 -26108968 - MSTA LTR MaLR -163 265 1 256 296 37 12 chr3 191928419 191928500 -26108658 + L2 LINE L2 3229 3311 -2 301 358 59 14 chr3 191929627 191929848 -26107310 + L2 LINE L2 3082 3312 -1 236 171 34 11 chr3 191929852 191929940 -26107218 + (TA)n Simple_repeat Simple_repeat 1 90 0 195 42 0 0 chr3 191929986 191930010 -26107148 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 438 69 0 0 chr3 191930410 191930468 -26106690 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 24 0 0 0 chr3 191930757 191930781 -26106377 + AT_rich Low_complexity Low_complexity 1 24 0 212 387 66 0 chr3 191931695 191931801 -26105357 + L2 LINE L2 3160 3272 0 180 322 122 0 chr3 191932581 191932671 -26104487 - MIR SINE MIR -6 256 156 275 255 61 51 chr3 191932713 191932811 -26104347 - MIR SINE MIR -107 155 57 431 235 101 0 chr3 191933429 191933548 -26103610 + L1ME1 LINE L1 6031 6161 -5 819 144 0 0 chr3 191933729 191933854 -26103304 - MSTA LTR MaLR 0 428 304 2050 120 0 41 chr3 191934256 191934401 -26102757 + AluSx SINE Alu 1 150 -162 2258 90 13 0 chr3 191934401 191934702 -26102456 + AluY SINE Alu 1 305 -6 2050 120 0 41 chr3 191934702 191934873 -26102285 + AluSx SINE Alu 150 304 -8 448 169 17 122 chr3 191935218 191935390 -26101768 - LTR37B LTR ERV1 0 468 315 276 30 0 0 chr3 191936096 191936129 -26101029 + (CA)n Simple_repeat Simple_repeat 2 34 0 357 145 26 66 chr3 191937330 191937406 -26099752 + AluS SINE Alu 228 300 0 401 315 16 0 chr3 191937439 191937566 -26099592 - L2 LINE L2 -2617 697 569 2195 201 18 78 chr3 191938902 191939497 -26097661 - L1MB7 LINE L1 -10 6174 5621 1605 206 28 14 chr3 191939497 191939856 -26097302 - MLT1A1 LTR MaLR 0 365 2 2195 201 18 78 chr3 191939856 191939922 -26097236 - L1MB7 LINE L1 -563 5621 5553 190 357 54 31 chr3 191940226 191940355 -26096803 - L2 LINE L2 -5 3267 3136 3240 172 12 2 chr3 191940449 191941053 -26096105 - L1MA4 LINE L1 0 6300 5691 669 153 0 9 chr3 191941053 191941164 -26095994 - L1MA4 LINE L1 -1214 4932 4823 23 33 0 0 chr3 191941268 191941298 -26095860 + AT_rich Low_complexity Low_complexity 1 30 0 1003 283 75 49 chr3 191941826 191942610 -26094548 - L1 LINE L1 -3017 3129 2267 584 244 75 31 chr3 191942894 191943148 -26094010 + HAL1 LINE L1 2243 2507 0 649 160 59 0 chr3 191943167 191943286 -26093872 + L1M3 LINE L1 5625 5750 -430 448 296 75 12 chr3 191943286 191943552 -26093606 - HERV16 LTR ERVL -2184 2812 2629 2131 144 8 11 chr3 191943721 191944083 -26093075 - MSTA-int LTR MaLR -1280 371 11 1990 181 46 14 chr3 191944087 191944502 -26092656 - MSTA LTR MaLR 0 428 1 3448 241 68 15 chr3 191944505 191945733 -26091425 - L1 LINE L1 -2127 4019 2726 23 0 0 0 chr3 191945903 191945926 -26091232 + AT_rich Low_complexity Low_complexity 1 23 0 315 0 0 0 chr3 191945969 191946004 -26091154 + (TA)n Simple_repeat Simple_repeat 1 35 0 1652 328 71 28 chr3 191947111 191948066 -26089092 - HERV16 LTR ERVL -2307 2689 1694 396 322 78 8 chr3 191948084 191948326 -26088832 - HERV16 LTR ERVL -3420 1576 1318 252 264 21 24 chr3 191948567 191948837 -26088321 + G-rich Low_complexity Low_complexity 1 269 0 229 333 0 29 chr3 191948881 191948983 -26088175 + GA-rich Low_complexity Low_complexity 3 101 0 732 201 6 31 chr3 191948985 191949144 -26088014 + MLT1D LTR MaLR 351 505 0 22 35 0 0 chr3 191949172 191949201 -26087957 + AT_rich Low_complexity Low_complexity 1 29 0 272 362 13 33 chr3 191949341 191949493 -26087665 - L2 LINE L2 -414 2900 2752 377 243 63 58 chr3 191949504 191949710 -26087448 + L1MC4a LINE L1 5789 5995 -1813 893 76 84 15 chr3 191950490 191950621 -26086537 - Tigger1 DNA MER2_type -89 2329 2190 186 43 0 0 chr3 191950761 191950784 -26086374 + (CA)n Simple_repeat Simple_repeat 2 24 0 2095 116 0 10 chr3 191951400 191951694 -26085464 + AluSp SINE Alu 1 291 -22 8825 215 34 7 chr3 191952014 191954821 -26082337 + L1PBa LINE L1 1957 4895 -1967 2672 159 96 22 chr3 191955925 191956477 -26080681 - Tigger1 DNA MER2_type 0 2418 1826 540 257 50 11 chr3 191956579 191956758 -26080400 + L1M4 LINE L1 4674 4859 -1287 21 57 0 0 chr3 191956846 191956881 -26080277 + AT_rich Low_complexity Low_complexity 1 35 0 479 311 150 17 chr3 191956881 191957061 -26080097 + MIR SINE MIR 11 214 -48 33 25 0 0 chr3 191957271 191957311 -26079847 + AT_rich Low_complexity Low_complexity 1 40 0 25 31 0 0 chr3 191957908 191957940 -26079218 + AT_rich Low_complexity Low_complexity 1 32 0 186 43 0 0 chr3 191959055 191959078 -26078080 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1084 298 94 3 chr3 191959083 191959465 -26077693 - LTR16A LTR ERVL 0 450 34 261 189 44 2 chr3 191959902 191959982 -26077176 + MER49 LTR ERV1 1 83 -639 1977 177 3 11 chr3 191960238 191960605 -26076553 - THE1B LTR MaLR 0 364 1 282 29 0 0 chr3 191961355 191961390 -26075768 + (TG)n Simple_repeat Simple_repeat 2 36 0 2060 224 62 11 chr3 191962140 191962685 -26074473 + MER90 LTR ERV1 3 575 0 2839 235 18 16 chr3 191963080 191964172 -26072986 + L1ME2 LINE L1 2036 3145 -3237 261 206 15 53 chr3 191964430 191964561 -26072597 + (CAAA)n Simple_repeat Simple_repeat 2 127 0 6529 198 23 21 chr3 191964603 191965909 -26071249 + MSTA-int LTR MaLR 344 1651 0 2327 137 54 15 chr3 191965911 191966319 -26070839 + MSTA LTR MaLR 3 426 -2 599 193 36 14 chr3 191966322 191966462 -26070696 + L1ME2 LINE L1 4255 4397 -1985 8770 158 10 12 chr3 191966470 191967227 -26069931 - Tigger1 DNA MER2_type -72 2346 1592 2164 134 0 0 chr3 191967227 191967525 -26069633 - AluSg SINE Alu -12 298 1 8770 158 10 12 chr3 191967525 191968276 -26068882 - Tigger1 DNA MER2_type -826 1592 841 758 265 76 27 chr3 191968601 191969008 -26068150 + L1ME2 LINE L1 5034 5460 -922 228 270 40 0 chr3 191969017 191969091 -26068067 + L1MC3 LINE L1 6043 6119 -1666 * 1052 259 56 62 chr3 191969090 191969588 -26067570 + L1ME2 LINE L1 5730 6224 -176 1517 185 13 67 chr3 191969786 191970159 -26066999 + MER46B DNA MER2_type 2 229 -7 27 0 0 0 chr3 191970505 191970532 -26066626 + AT_rich Low_complexity Low_complexity 1 27 0 219 292 79 22 chr3 191970735 191970824 -26066334 - MER5B DNA MER1_type -4 174 81 2524 193 21 42 chr3 191971077 191971643 -26065515 - Tigger1 DNA MER2_type -1860 558 5 1942 211 83 2 chr3 191971645 191972134 -26065024 + L1M2 LINE L1 5474 6000 -548 240 237 26 13 chr3 191972167 191972243 -26064915 + L1M2 LINE L1 5970 6046 -502 37 81 0 0 chr3 191972382 191972468 -26064690 + GC_rich Low_complexity Low_complexity 1 86 0 4581 163 29 7 chr3 191972517 191973380 -26063778 + Tigger3(Golem) DNA MER2_type 2148 3029 0 21 0 0 0 chr3 191973543 191973564 -26063594 + GC_rich Low_complexity Low_complexity 1 21 0 769 231 35 72 chr3 191973879 191974256 -26062902 + THE1B LTR MaLR 2 364 0 264 261 0 0 chr3 191974259 191974324 -26062834 - L1M4 LINE L1 -1188 4958 4894 2936 229 53 16 chr3 191974434 191975365 -26061793 - L1M4 LINE L1 -1409 4737 3773 2263 186 90 10 chr3 191975382 191975882 -26061276 + MER34 LTR ERV1 1 540 -2 274 230 46 0 chr3 191976138 191976225 -26060933 - L1 LINE L1 -1997 4149 4059 630 220 58 40 chr3 191976294 191976517 -26060641 - L1 LINE L1 -2256 3890 3664 742 299 51 33 chr3 191976649 191977138 -26060020 - L1 LINE L1 -2469 3677 3180 941 288 73 47 chr3 191977707 191978147 -26059011 - LTR16A LTR ERVL -7 443 1 325 325 81 41 chr3 191978259 191978456 -26058702 + MLT1J LTR MaLR 5 209 -302 3680 211 19 47 chr3 191979143 191979827 -26057331 - L1 LINE L1 -1056 5090 4443 2289 72 3 0 chr3 191979827 191980131 -26057027 - L1PA7 LINE L1 -15 6139 5835 3680 211 19 47 chr3 191980131 191980492 -26056666 - L1 LINE L1 -1703 4443 4074 729 272 164 13 chr3 191980703 191981001 -26056157 + L1MEc LINE L1 241 583 -5813 394 262 87 48 chr3 191981038 191981164 -26055994 - MER58A DNA MER1_type -46 178 48 1133 293 46 13 chr3 191981200 191981726 -26055432 + L1MEc LINE L1 594 1136 -5260 5317 109 25 11 chr3 191981978 191982442 -26054716 + L1PB1 LINE L1 5310 5793 -358 387 0 0 0 chr3 191982442 191982485 -26054673 + (TA)n Simple_repeat Simple_repeat 1 43 0 5317 109 25 11 chr3 191982485 191982848 -26054310 + L1PB1 LINE L1 5793 6149 -2 860 175 25 0 chr3 191983877 191984031 -26053127 + L1MC1 LINE L1 6168 6326 -2 2027 155 0 0 chr3 191984031 191984340 -26052818 + AluSx SINE Alu 1 309 -3 26 64 0 0 chr3 191984352 191984399 -26052759 + AT_rich Low_complexity Low_complexity 1 47 0 255 363 10 0 chr3 191984733 191984835 -26052323 - MER5B DNA MER1_type -1 177 75 1315 38 0 0 chr3 191984964 191985124 -26052034 - L1PA4 LINE L1 -2 6153 5994 186 43 0 0 chr3 191987714 191987737 -26049421 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1084 298 94 3 chr3 191987742 191988124 -26049034 - LTR16A LTR ERVL 0 450 34 1190 159 20 0 chr3 191988550 191988745 -26048413 + MER72 LTR ERV1 1 199 -523 1229 145 214 60 chr3 191988758 191988907 -26048251 - MSTA LTR MaLR -62 366 241 1717 163 32 0 chr3 191988907 191989184 -26047974 - AluJb SINE Alu -22 290 5 1229 145 214 60 chr3 191989184 191989351 -26047807 - MSTA LTR MaLR -187 241 1 257 139 70 0 chr3 191989353 191989396 -26047762 + MERVL LTR ERVL 4450 4495 -990 861 133 19 70 chr3 191989414 191989572 -26047586 + MER72 LTR ERV1 177 326 -396 1978 125 7 0 chr3 191989580 191989867 -26047291 + MER72 LTR ERV1 434 722 0 361 298 117 24 chr3 191989917 191990122 -26047036 + MIR SINE MIR 36 259 -3 368 22 0 0 chr3 191990594 191990640 -26046518 - MADE1 DNA Mariner 0 80 35 254 309 44 29 chr3 191990710 191990846 -26046312 + MLT1H LTR MaLR 12 149 -400 2118 129 42 21 chr3 191991340 191991719 -26045439 + L1MA5 LINE L1 5904 6290 -10 2200 101 0 0 chr3 191991729 191992042 -26045116 - AluSx SINE Alu 0 313 1 23 78 0 0 chr3 191992054 191992105 -26045053 + AT_rich Low_complexity Low_complexity 1 51 0 468 246 35 123 chr3 191994475 191994735 -26042423 + L2 LINE L2 3077 3313 0 285 307 108 80 chr3 191994733 191994800 -26042358 + L2 LINE L2 2917 2981 -332 * 1385 206 66 20 chr3 191994800 191995149 -26042009 + MLT1A1 LTR MaLR 1 365 0 285 307 108 80 chr3 191995149 191995443 -26041715 + L2 LINE L2 2981 3288 -25 389 336 15 0 chr3 191995761 191995892 -26041266 - L2 LINE L2 -345 2968 2836 199 319 109 8 chr3 191997508 191997627 -26039531 + MIR SINE MIR 114 244 -18 289 210 320 0 chr3 191998390 191998490 -26038668 + L2 LINE L2 3182 3313 0 35 54 0 0 chr3 191998672 191998728 -26038430 + AT_rich Low_complexity Low_complexity 1 56 0 1960 133 0 3 chr3 191998753 191999039 -26038119 + AluSx SINE Alu 1 285 -27 307 279 109 37 chr3 192000304 192000598 -26036560 + L1ME LINE L1 5506 5820 -301 21 0 0 0 chr3 192000725 192000746 -26036412 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr3 192000778 192000807 -26036351 + AT_rich Low_complexity Low_complexity 1 29 0 337 289 11 126 chr3 192000971 192001234 -26035924 + L2 LINE L2 3081 3313 0 552 320 56 56 chr3 192002794 192003185 -26033973 + LTR16B LTR ERVL 31 421 -43 206 329 13 13 chr3 192003453 192003532 -26033626 + MER5B DNA MER1_type 1 79 -99 844 181 0 0 chr3 192004073 192004217 -26032941 - AluJb SINE Alu -44 268 125 421 250 49 21 chr3 192005194 192005338 -26031820 + Charlie8 DNA MER1_type 45 192 -2225 365 325 45 13 chr3 192005562 192005716 -26031442 + L2 LINE L2 2326 2484 -830 3947 203 32 20 chr3 192005729 192006050 -26031108 - L1MA7 LINE L1 -2 6289 5973 2607 116 3 0 chr3 192006050 192006413 -26030745 + THE1B LTR MaLR 1 364 0 3947 203 32 20 chr3 192006413 192007003 -26030155 - L1MA7 LINE L1 -318 5973 5367 916 267 0 8 chr3 192007004 192007255 -26029903 - L1MA7 LINE L1 -3274 2872 2624 1090 288 57 19 chr3 192007256 192007728 -26029430 - L1M4c LINE L1 -4772 1612 1123 2639 173 2 0 chr3 192007743 192008223 -26028935 - L1MA6 LINE L1 -6 7315 6835 879 211 56 85 chr3 192008312 192008807 -26028351 - LTR28 LTR ERV1 -138 894 1 9655 181 34 27 chr3 192008807 192010661 -26026497 - L1MA6 LINE L1 -467 6854 4970 2492 49 0 7 chr3 192010661 192010967 -26026191 - AluY SINE Alu -7 304 1 9655 181 34 27 chr3 192010967 192011769 -26025389 - L1MA6 LINE L1 -2351 4970 4176 4365 236 70 35 chr3 192011741 192013549 -26023609 - L1MA6 LINE L1 -4059 3108 1573 * 1426 318 65 19 chr3 192013662 192014117 -26023041 - L1MA6 LINE L1 -6488 680 185 2152 106 10 0 chr3 192014117 192014418 -26022740 - AluSg SINE Alu -6 304 1 1426 318 65 19 chr3 192014418 192014606 -26022552 - L1MA6 LINE L1 -6983 185 7 2226 269 50 53 chr3 192014608 192015451 -26021707 - L1M3b LINE L1 -4751 1530 691 2010 189 23 18 chr3 192016241 192016633 -26020525 + MSTB1 LTR MaLR 1 394 -38 383 204 0 65 chr3 192016639 192016732 -26020426 + MLT1D LTR MaLR 14 100 -405 246 100 0 25 chr3 192016725 192016765 -26020393 + MSTB1 LTR MaLR 394 432 0 * 343 236 57 19 chr3 192016775 192016881 -26020277 - L1M3b LINE L1 -5844 427 318 183 222 0 0 chr3 192016882 192016918 -26020240 + L2 LINE L2 3001 3036 -236 427 311 62 58 chr3 192017336 192017593 -26019565 + L2 LINE L2 3042 3299 -14 26 30 0 0 chr3 192017667 192017700 -26019458 + AT_rich Low_complexity Low_complexity 1 33 0 931 196 70 63 chr3 192017755 192018183 -26018975 + MLT1D LTR MaLR 1 505 0 364 82 0 0 chr3 192020215 192020264 -26016894 - MLT2B3 LTR ERVL 0 520 472 1311 206 40 14 chr3 192020264 192020541 -26016617 - MLT2B3 LTR ERVL -270 284 1 616 304 48 40 chr3 192020833 192021254 -26015904 - HAL1 LINE L1 0 2507 2084 704 260 132 30 chr3 192021289 192021585 -26015573 + MLT1J2 LTR MaLR 4 329 -121 700 128 8 8 chr3 192021612 192021737 -26015421 + (GGAA)n Simple_repeat Simple_repeat 2 126 0 442 326 98 30 chr3 192021764 192022000 -26015158 - MIR SINE MIR 0 262 11 268 247 14 0 chr3 192022645 192022718 -26014440 + L1M LINE L1 5322 5395 -767 1676 293 97 20 chr3 192022772 192023441 -26013717 - L1ME3A LINE L1 -5 6165 5549 2780 62 0 26 chr3 192023441 192023788 -26013370 - L1PA8 LINE L1 -4 6168 5830 2512 78 0 0 chr3 192023788 192024096 -26013062 - AluSg SINE Alu -2 308 1 2780 62 0 26 chr3 192024096 192024134 -26013024 - L1PA8 LINE L1 -342 5830 5793 1676 293 97 20 chr3 192024134 192024549 -26012609 - L1ME3A LINE L1 -621 5549 5167 2284 81 34 0 chr3 192024549 192024845 -26012313 - AluSg SINE Alu -4 306 1 1676 293 97 20 chr3 192024845 192025490 -26011668 - L1ME3A LINE L1 -1003 5167 4278 1029 240 121 64 chr3 192025554 192026317 -26010841 - L1ME3A LINE L1 -2101 4045 3224 2223 99 0 34 chr3 192026317 192026640 -26010518 - AluSx SINE Alu 0 312 1 1029 240 121 64 chr3 192026640 192026754 -26010404 - L1ME3A LINE L1 -2922 3224 3118 22 35 0 0 chr3 192026830 192026859 -26010299 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr3 192027135 192027174 -26009984 + AT_rich Low_complexity Low_complexity 1 39 0 183 318 59 0 chr3 192027399 192027484 -26009674 - MIR SINE MIR -108 154 65 1773 131 7 0 chr3 192028917 192029191 -26007967 - AluSp SINE Alu -3 310 35 274 342 47 7 chr3 192029193 192029342 -26007816 + MIR3 SINE MIR 53 207 -1 24 0 0 0 chr3 192030095 192030119 -26007039 + AT_rich Low_complexity Low_complexity 1 24 0 2071 107 7 0 chr3 192030843 192031123 -26006035 + AluSx SINE Alu 12 293 -19 21 0 0 0 chr3 192031123 192031144 -26006014 + AT_rich Low_complexity Low_complexity 1 21 0 1485 182 18 7 chr3 192031144 192031419 -26005739 - MER2 DNA MER2_type -67 278 1 23 0 0 0 chr3 192034086 192034109 -26003049 + AT_rich Low_complexity Low_complexity 1 23 0 250 239 60 0 chr3 192034290 192034357 -26002801 + L1ME3A LINE L1 6099 6169 -1 842 193 0 0 chr3 192034425 192034570 -26002588 - FRAM SINE Alu -27 149 5 260 247 31 62 chr3 192034636 192034733 -26002425 + MER5A DNA MER1_type 95 188 -1 1710 272 82 19 chr3 192037268 192038133 -25999025 - L1ME3A LINE L1 -8 6162 5177 1480 251 52 23 chr3 192038135 192038773 -25998385 + L1ME LINE L1 5092 5741 -425 2384 163 9 35 chr3 192039142 192039577 -25997581 - MSTB1 LTR MaLR 0 432 9 21 0 0 0 chr3 192041379 192041400 -25995758 + AT_rich Low_complexity Low_complexity 1 21 0 201 121 0 0 chr3 192041704 192041737 -25995421 + (TC)n Simple_repeat Simple_repeat 2 34 0 247 366 49 8 chr3 192041782 192041905 -25995253 - MIR3 SINE MIR -27 181 54 336 319 0 0 chr3 192043064 192043155 -25994003 + L3 LINE CR1 980 1070 -507 302 232 20 61 chr3 192043303 192043402 -25993756 - L1MC4 LINE L1 -1339 6703 6609 190 107 45 54 chr3 192043419 192043531 -25993627 + (TA)n Simple_repeat Simple_repeat 1 111 0 258 137 40 46 chr3 192043572 192043747 -25993411 + (TTATA)n Simple_repeat Simple_repeat 1 174 0 323 217 33 8 chr3 192043747 192043867 -25993291 + (TATAA)n Simple_repeat Simple_repeat 2 124 0 570 136 43 29 chr3 192043871 192044217 -25992941 + (TA)n Simple_repeat Simple_repeat 1 351 0 237 174 46 9 chr3 192044380 192044489 -25992669 + (TA)n Simple_repeat Simple_repeat 2 114 0 23 33 0 0 chr3 192044699 192044729 -25992429 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr3 192044813 192044841 -25992317 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 192044927 192044949 -25992209 + AT_rich Low_complexity Low_complexity 1 22 0 415 289 78 12 chr3 192045146 192045312 -25991846 + MIR SINE MIR 82 258 -4 190 347 93 0 chr3 192045312 192045387 -25991771 + L3 LINE CR1 1063 1144 -433 192 97 0 0 chr3 192045483 192045514 -25991644 + (TG)n Simple_repeat Simple_repeat 2 32 0 552 289 87 0 chr3 192045781 192045954 -25991204 + L3 LINE CR1 1153 1340 -237 314 360 55 37 chr3 192046169 192046333 -25990825 - L2 LINE L2 -10 3262 3096 2953 162 14 19 chr3 192048388 192048969 -25988189 - L1MB3 LINE L1 -7 6176 5599 297 313 10 0 chr3 192050118 192050217 -25986941 + MIR SINE MIR 40 139 -69 245 367 133 11 chr3 192050616 192050886 -25986272 - L2 LINE L2 -404 2910 2608 196 329 24 0 chr3 192051199 192051284 -25985874 + L2 LINE L2 2897 2983 -289 29 0 0 0 chr3 192052472 192052501 -25984657 + AT_rich Low_complexity Low_complexity 1 29 0 2383 63 3 6 chr3 192054380 192054698 -25982460 - LTR7 LTR ERV1 -133 317 1 801 119 46 20 chr3 192054999 192055150 -25982008 + L1MA4A LINE L1 6148 6302 -1 1856 137 18 0 chr3 192057375 192057680 -25979478 + AluSx SINE Alu 1 310 0 1993 230 14 9 chr3 192057903 192058333 -25978825 + MER74C LTR ERVL 9 440 -20 740 301 12 24 chr3 192058510 192058756 -25978402 - MIR SINE MIR -3 259 17 241 397 25 8 chr3 192059078 192059199 -25977959 - MIR SINE MIR -112 150 28 282 333 134 11 chr3 192060066 192060252 -25976906 - MIR SINE MIR -7 255 47 236 30 30 0 chr3 192060583 192060616 -25976542 + (TG)n Simple_repeat Simple_repeat 1 34 0 547 260 41 25 chr3 192060623 192060819 -25976339 - MIR SINE MIR -48 214 16 23 68 0 0 chr3 192060973 192061017 -25976141 + AT_rich Low_complexity Low_complexity 1 44 0 476 346 48 79 chr3 192061198 192061520 -25975638 - L2 LINE L2 -276 3037 2721 2427 70 0 13 chr3 192061520 192061835 -25975323 - AluY SINE Alu 0 311 1 476 346 48 79 chr3 192061835 192061947 -25975211 - L2 LINE L2 -592 2721 2607 1039 265 62 15 chr3 192061950 192062274 -25974884 - MER58B DNA MER1_type -1 340 2 639 325 20 43 chr3 192062474 192062822 -25974336 - L3 LINE CR1 -117 1460 1121 22 0 0 0 chr3 192062846 192062868 -25974290 + AT_rich Low_complexity Low_complexity 1 22 0 1605 181 69 29 chr3 192063761 192064136 -25973022 - MLT1B LTR MaLR 0 390 1 646 260 45 87 chr3 192064244 192064532 -25972626 - LTR33A LTR ERVL -5 518 243 225 364 25 16 chr3 192064820 192064941 -25972217 - MLT1L LTR MaLR -409 206 85 283 336 9 0 chr3 192065437 192065547 -25971611 - MIR SINE MIR -142 120 10 898 249 0 5 chr3 192066931 192067140 -25970018 + MER3 DNA MER1_type 1 208 -1 243 0 0 0 chr3 192067384 192067411 -25969747 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 27 0 0 0 chr3 192068196 192068223 -25968935 + AT_rich Low_complexity Low_complexity 1 27 0 1580 173 45 0 chr3 192068397 192068686 -25968472 - MLT1B LTR MaLR -88 302 1 257 254 0 0 chr3 192069415 192069470 -25967688 + AluJ/monomer SINE Alu 245 299 -3 216 158 0 0 chr3 192069473 192069511 -25967647 + GA-rich Low_complexity Low_complexity 3 40 0 * 278 49 0 24 chr3 192069509 192069550 -25967608 + (GAAAA)n Simple_repeat Simple_repeat 5 44 0 5122 145 33 6 chr3 192070367 192071349 -25965809 + L1PA16 LINE L1 5153 6161 -5 3402 62 0 7 chr3 192071567 192072018 -25965140 - LTR7 LTR ERV1 -2 448 1 2426 89 45 16 chr3 192072018 192072399 -25964759 - HERVH LTR ERV1 0 7713 7322 1373 122 18 14 chr3 192072397 192072619 -25964539 - HERVH LTR ERV1 -1894 5819 5597 * 4361 135 3 1 chr3 192072616 192073277 -25963881 - HERVH LTR ERV1 -2564 5149 4488 3225 116 2 4 chr3 192073279 192073771 -25963387 - HERVH LTR ERV1 -3720 3993 3503 916 140 7 0 chr3 192073773 192073923 -25963235 - HERVH LTR ERV1 -4423 3290 3140 * 19643 99 22 9 chr3 192073902 192076859 -25960299 - HERVH LTR ERV1 -4718 2995 1 688 90 0 20 chr3 192076861 192076961 -25960197 - LTR7 LTR ERV1 -2 448 351 471 330 86 5 chr3 192077722 192077931 -25959227 - MIR SINE MIR -6 256 31 3118 230 109 109 chr3 192078454 192078745 -25958413 + L1MD1 LINE L1 1 291 -6249 195 42 0 0 chr3 192078745 192078769 -25958389 + (TA)n Simple_repeat Simple_repeat 2 25 0 3118 230 109 109 chr3 192078769 192079634 -25957524 + L1MD1 LINE L1 291 1242 -5298 431 229 0 0 chr3 192079634 192079717 -25957441 - Tigger5 DNA MER2_type 0 2323 2241 3118 230 109 109 chr3 192079717 192080239 -25956919 + L1MD1 LINE L1 1241 1762 -4778 7583 33 0 0 chr3 192080247 192081653 -25955505 - L1PA3 LINE L1 0 6155 4750 326 210 0 0 chr3 192081652 192081714 -25955444 + L1MD1 LINE L1 1759 1820 -4720 * 3791 128 46 5 chr3 192081714 192082326 -25954832 + Tigger1 DNA MER2_type 331 967 -1451 4477 218 46 13 chr3 192082327 192084069 -25953089 + L1MD1 LINE L1 4838 6635 -1 432 158 26 0 chr3 192084440 192084516 -25952642 + MSTB1 LTR MaLR 345 422 -10 5255 155 38 39 chr3 192085923 192086354 -25950804 - L1MA4A LINE L1 -11 7354 6924 1416 214 10 20 chr3 192086354 192086649 -25950509 + AluJo SINE Alu 1 292 -10 5255 155 38 39 chr3 192086649 192087607 -25949551 - L1MA4A LINE L1 -441 6924 5962 235 118 0 0 chr3 192087612 192087646 -25949512 - THE1C LTR MaLR 0 364 331 1446 121 0 0 chr3 192087649 192087883 -25949275 + AluSq SINE Alu 85 318 0 1409 144 56 117 chr3 192087887 192088247 -25948911 - THE1C LTR MaLR -37 338 1 817 158 27 0 chr3 192088249 192088395 -25948763 - L1MA4A LINE L1 -1249 5959 5810 9027 182 32 10 chr3 192088396 192089591 -25947567 - L1MA4A LINE L1 -1449 5759 4592 2179 123 0 0 chr3 192089591 192089893 -25947265 - AluSg SINE Alu -8 302 1 9027 182 32 10 chr3 192089893 192089925 -25947233 - L1MA4A LINE L1 -2616 4592 4562 1458 216 10 14 chr3 192089925 192090217 -25946941 - AluJo SINE Alu -21 291 1 9027 182 32 10 chr3 192090217 192090970 -25946188 - L1MA4A LINE L1 -2646 4562 3734 246 81 0 0 chr3 192090971 192091008 -25946150 + (TG)n Simple_repeat Simple_repeat 2 38 0 1147 132 36 5 chr3 192091008 192091228 -25945930 - L1MA4A LINE L1 -4809 2400 2174 686 195 0 0 chr3 192091225 192091343 -25945815 + L1M2 LINE L1 1413 1530 -5319 * 2803 224 42 5 chr3 192091343 192091969 -25945189 - L1MA4A LINE L1 -6588 621 2 381 265 99 55 chr3 192092295 192092350 -25944808 - MIR SINE MIR 0 262 211 303 85 0 0 chr3 192092350 192092397 -25944761 + (TG)n Simple_repeat Simple_repeat 2 48 0 381 265 99 55 chr3 192092397 192092522 -25944636 - MIR SINE MIR -51 211 74 1328 268 136 52 chr3 192092937 192093315 -25943843 + L1ME3A LINE L1 3679 4024 -2122 3578 148 36 7 chr3 192093315 192093932 -25943226 - MER41B LTR ERV1 0 635 1 1328 268 136 52 chr3 192093932 192093950 -25943208 + L1ME3A LINE L1 4024 4039 -2107 3595 54 2 0 chr3 192093950 192094396 -25942762 - L1PA7 LINE L1 -2 6152 5706 1328 268 136 52 chr3 192094396 192095429 -25941729 + L1ME3A LINE L1 4039 5230 -916 619 116 0 0 chr3 192095456 192095595 -25941563 - AluSc SINE Alu 0 334 196 1870 250 94 52 chr3 192095608 192096395 -25940763 + L1ME3A LINE L1 5295 6114 -56 2097 173 33 36 chr3 192096398 192096951 -25940207 - MLT2A2 LTR ERVL 0 554 1 21 36 0 0 chr3 192097199 192097227 -25939931 + AT_rich Low_complexity Low_complexity 1 28 0 1855 104 7 35 chr3 192100183 192100514 -25936644 - AluSg SINE Alu 0 323 1 21 57 0 0 chr3 192100704 192100739 -25936419 + AT_rich Low_complexity Low_complexity 1 35 0 313 158 13 237 chr3 192101255 192101407 -25935751 - MER92A LTR ERV1 -3 409 292 3358 202 28 53 chr3 192101428 192102325 -25934833 - L1MD1 LINE L1 -92 6150 5277 2095 187 0 8 chr3 192102325 192102715 -25934443 - MLT1B LTR MaLR 0 390 4 764 216 117 92 chr3 192102728 192102814 -25934344 + MLT1A1 LTR MaLR 4 86 -279 1736 127 51 38 chr3 192102814 192103106 -25934052 + AluSx SINE Alu 1 296 -16 764 216 117 92 chr3 192103106 192103347 -25933811 + MLT1A1 LTR MaLR 86 365 0 490 245 36 0 chr3 192103351 192103490 -25933668 - L1MD1 LINE L1 -893 5253 5110 * 897 257 56 38 chr3 192103469 192103842 -25933316 - L1MD1 LINE L1 -2165 3981 3602 21 36 0 0 chr3 192104128 192104156 -25933002 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr3 192104665 192104698 -25932460 + AT_rich Low_complexity Low_complexity 1 33 0 380 333 60 49 chr3 192105292 192105640 -25931518 + MLT1K LTR MaLR 237 588 0 187 259 56 0 chr3 192106170 192106224 -25930934 + MIR SINE MIR 138 194 -68 1277 208 7 3 chr3 192106710 192106994 -25930164 + L1MC4 LINE L1 6806 7090 -952 974 231 84 10 chr3 192107014 192107312 -25929846 + L1MC4 LINE L1 7261 7580 -462 4230 127 63 42 chr3 192107321 192108695 -25928463 - pTR5 LTR ERV1 0 2438 745 452 234 83 54 chr3 192108695 192108900 -25928258 + L1MC4a LINE L1 7502 7712 -96 3771 87 16 48 chr3 192108974 192109238 -25927920 + L1PB1 LINE L1 5559 5830 -321 240 111 0 0 chr3 192109238 192109274 -25927884 + (TA)n Simple_repeat Simple_repeat 2 37 0 3771 87 16 48 chr3 192109274 192109620 -25927538 + L1PB1 LINE L1 5830 6150 -1 208 322 0 0 chr3 192111339 192111398 -25925760 - L2 LINE L2 -1396 1918 1860 1465 117 8 16 chr3 192111426 192111673 -25925485 + L1MA5A LINE L1 6053 6297 0 655 320 116 43 chr3 192111849 192112393 -25924765 - L2 LINE L2 -4 3309 2734 2078 243 83 81 chr3 192112434 192114400 -25922758 - L1ME3 LINE L1 -55 6107 4128 1373 311 99 41 chr3 192114404 192115185 -25921973 - L2 LINE L2 -571 2743 1918 8461 153 21 12 chr3 192117527 192120118 -25917040 + L1MA5A LINE L1 3654 6274 -23 29 0 0 0 chr3 192120118 192120147 -25917011 + AT_rich Low_complexity Low_complexity 1 29 0 894 234 31 13 chr3 192121416 192121643 -25915515 - MLT1C LTR MaLR 0 467 237 193 375 26 26 chr3 192121706 192121858 -25915300 - L2 LINE L2 -455 2859 2708 57 75 0 0 chr3 192122049 192122169 -25914989 + AT_rich Low_complexity Low_complexity 1 120 0 195 184 0 0 chr3 192123128 192123166 -25913992 + (TG)n Simple_repeat Simple_repeat 2 39 0 446 341 37 0 chr3 192123581 192123745 -25913413 + MIR3 SINE MIR 33 202 -6 24 0 0 0 chr3 192123845 192123869 -25913289 + AT_rich Low_complexity Low_complexity 1 24 0 860 345 152 12 chr3 192123912 192124510 -25912648 - L3 LINE CR1 -50 1527 846 668 203 14 22 chr3 192126642 192126780 -25910378 + MIR SINE MIR 15 151 -111 287 296 22 30 chr3 192127068 192127203 -25909955 - LTR37B LTR ERV1 -329 139 6 213 222 0 95 chr3 192127229 192127292 -25909866 + MIR SINE MIR 191 247 -15 227 149 0 64 chr3 192127552 192127599 -25909559 - MLT2B3 LTR ERVL -8 546 503 648 111 26 0 chr3 192127599 192127716 -25909442 + (TAGA)n Simple_repeat Simple_repeat 4 123 0 2677 199 34 21 chr3 192127718 192128038 -25909120 - MLT2B3 LTR ERVL -20 534 203 592 63 13 0 chr3 192128038 192128117 -25909041 - MADE1 DNA Mariner 0 80 1 2677 199 34 21 chr3 192128117 192128323 -25908835 - MLT2B3 LTR ERVL -351 203 1 22 0 0 0 chr3 192128449 192128471 -25908687 + AT_rich Low_complexity Low_complexity 1 22 0 406 291 33 31 chr3 192128981 192129168 -25907990 - MIR SINE MIR -51 157 2 225 229 69 78 chr3 192129437 192129625 -25907533 + MIR SINE MIR 6 249 -13 180 0 0 0 chr3 192129889 192129909 -25907249 + (CAT)n Simple_repeat Simple_repeat 2 21 0 2768 10 0 0 chr3 192130435 192130742 -25906416 + AluY SINE Alu 1 307 -4 457 275 49 28 chr3 192131078 192131220 -25905938 - MIR3 SINE MIR -55 153 9 248 254 28 0 chr3 192131669 192131740 -25905418 + L1MC4 LINE L1 6631 6703 -1339 243 269 0 0 chr3 192131696 192131763 -25905395 - L1MC4 LINE L1 -1339 6703 6637 * 206 243 221 29 chr3 192133110 192133250 -25903908 + MIR SINE MIR 20 186 -76 22 0 0 0 chr3 192133316 192133338 -25903820 + AT_rich Low_complexity Low_complexity 1 22 0 213 159 0 0 chr3 192133874 192133918 -25903240 + (TTA)n Simple_repeat Simple_repeat 3 46 0 32 95 0 0 chr3 192134297 192134392 -25902766 + AT_rich Low_complexity Low_complexity 1 95 0 748 160 7 40 chr3 192134717 192134867 -25902291 + L1PA16 LINE L1 6021 6165 -1 25 0 0 0 chr3 192136226 192136251 -25900907 + AT_rich Low_complexity Low_complexity 1 25 0 943 309 83 46 chr3 192136396 192136835 -25900323 + L2 LINE L2 2235 2703 -611 1861 130 47 13 chr3 192136835 192137136 -25900022 - AluSx SINE Alu -1 311 1 943 309 83 46 chr3 192137136 192137285 -25899873 + L2 LINE L2 2703 2845 -469 279 218 39 0 chr3 192137305 192137383 -25899775 - MER53 DNA DNA -86 103 23 * 323 231 13 0 chr3 192137316 192137394 -25899764 + MER53 DNA DNA 110 188 -1 259 309 37 0 chr3 192137689 192137770 -25899388 + L2 LINE L2 3176 3259 -13 281 316 102 28 chr3 192138264 192138441 -25898717 + MIR SINE MIR 2 191 -71 575 310 23 28 chr3 192138642 192138754 -25898404 - Charlie8 DNA MER1_type -65 265 153 1247 159 68 88 chr3 192138754 192139062 -25898096 - AluJb SINE Alu 0 302 1 575 310 23 28 chr3 192139062 192139165 -25897993 - Charlie8 DNA MER1_type -177 153 51 314 231 167 19 chr3 192140269 192140377 -25896781 - MER110 LTR ERV1 -70 421 298 180 0 0 0 chr3 192140379 192140399 -25896759 + (T)n Simple_repeat Simple_repeat 1 20 0 1260 80 263 24 chr3 192140399 192140650 -25896508 - Tigger3b DNA MER2_type -590 641 331 1449 40 0 0 chr3 192140654 192140831 -25896327 - L1PA4 LINE L1 -2 6153 5977 544 288 72 22 chr3 192140897 192141119 -25896039 - MER110 LTR ERV1 -258 233 1 277 283 38 47 chr3 192141565 192141671 -25895487 - MIR3 SINE MIR -31 177 73 3085 133 20 4 chr3 192142119 192142608 -25894550 + LOR1a LTR ERV1 1 497 0 22 56 0 0 chr3 192143297 192143333 -25893825 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 192143798 192143819 -25893339 + AT_rich Low_complexity Low_complexity 1 21 0 1847 172 0 13 chr3 192144125 192144439 -25892719 + AluJb SINE Alu 1 310 -2 665 212 61 18 chr3 192144487 192144652 -25892506 + MER45R DNA AcHobo 1408 1579 -2 1047 321 29 49 chr3 192144654 192144934 -25892224 + MER110-int LTR ERV1 4067 4351 -296 1707 218 25 80 chr3 192144934 192145484 -25891674 + MLT2B1 LTR ERVL 1 520 0 1047 321 29 49 chr3 192145484 192145792 -25891366 + MER110-int LTR ERV1 4351 4643 -4 597 326 56 35 chr3 192146087 192146406 -25890752 + MER110 LTR ERV1 166 491 0 508 169 63 48 chr3 192146771 192146964 -25890194 - L1 LINE L1 -816 5330 5125 2116 94 3 0 chr3 192147600 192147887 -25889271 - AluSg SINE Alu 0 310 23 831 209 16 11 chr3 192148703 192148890 -25888268 - MER5A DNA MER1_type -1 188 1 207 0 0 0 chr3 192149071 192149094 -25888064 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 340 395 27 0 chr3 192149264 192149411 -25887747 + MIR SINE MIR 2 152 -110 525 268 108 92 chr3 192149422 192149791 -25887367 - MLT1J2 LTR MaLR -3 447 73 213 293 0 0 chr3 192149875 192149933 -25887225 + MIR SINE MIR 159 216 -46 2058 125 3 3 chr3 192150068 192150365 -25886793 + AluSq SINE Alu 1 297 -16 978 269 81 96 chr3 192150484 192151201 -25885957 - L1MC5 LINE L1 -65 7896 7206 1861 150 3 0 chr3 192151201 192151488 -25885670 - AluSx SINE Alu -15 297 10 978 269 81 96 chr3 192151488 192152072 -25885086 - L1MC5 LINE L1 -755 7206 6615 * 1880 250 23 14 chr3 192152060 192152696 -25884462 - L1M4 LINE L1 -3414 3543 2899 260 252 54 18 chr3 192152714 192152825 -25884333 - L1M4 LINE L1 -6653 206 92 311 276 158 13 chr3 192153119 192153271 -25883887 + MIR SINE MIR 78 251 -11 23 92 0 0 chr3 192153444 192153509 -25883649 + AT_rich Low_complexity Low_complexity 1 65 0 22 35 0 0 chr3 192153943 192153972 -25883186 + AT_rich Low_complexity Low_complexity 1 29 0 217 254 0 0 chr3 192154021 192154076 -25883082 + A-rich Low_complexity Low_complexity 1 55 0 398 293 75 40 chr3 192155242 192155416 -25881742 - MIR SINE MIR -71 191 12 233 337 40 16 chr3 192155452 192155595 -25881563 + MIR SINE MIR 40 184 -67 4666 209 42 8 chr3 192155719 192157107 -25880051 - L1MC2 LINE L1 -12 6332 4901 241 214 67 22 chr3 192157899 192157988 -25879170 - MLT1L LTR MaLR -6 609 517 269 268 31 43 chr3 192158151 192158278 -25878880 - MLT1L LTR MaLR -305 141 54 849 185 20 0 chr3 192158505 192158656 -25878502 - FRAM SINE Alu -21 155 2 214 339 113 24 chr3 192158770 192158938 -25878220 + L2 LINE L2 2561 2743 -571 278 243 43 0 chr3 192159438 192159508 -25877650 + L2 LINE L2 3227 3299 -14 422 229 34 0 chr3 192160032 192160146 -25877012 - MIR SINE MIR -59 149 30 1080 269 31 13 chr3 192160189 192160558 -25876600 + MLT2E LTR ERVL 1 477 -151 1810 109 33 4 chr3 192160558 192160834 -25876324 + AluSx SINE Alu 21 304 -8 1080 269 31 13 chr3 192160834 192160989 -25876169 + MLT2E LTR ERVL 477 628 0 347 349 20 102 chr3 192162074 192162369 -25874789 - L2 LINE L2 -12 3260 2990 677 219 10 62 chr3 192162400 192162587 -25874571 - LOR1a LTR ERV1 0 497 321 9028 115 13 7 chr3 192162587 192162759 -25874399 - HSMAR1 DNA Mariner 0 1287 1118 1720 196 18 9 chr3 192162759 192163095 -25874063 - MER61A LTR ERV1 0 343 5 9028 115 13 7 chr3 192163095 192164201 -25872957 - HSMAR1 DNA Mariner -169 1118 1 394 255 43 62 chr3 192164290 192164451 -25872707 - LOR1b LTR ERV1 -189 272 115 616 224 19 6 chr3 192164521 192164682 -25872476 - MER53 DNA DNA -26 163 1 732 230 47 77 chr3 192164750 192164909 -25872249 + MLT1B LTR MaLR 20 100 -290 2287 76 7 0 chr3 192164909 192165211 -25871947 + AluY SINE Alu 1 304 -7 732 230 47 77 chr3 192165211 192165286 -25871872 + MLT1B LTR MaLR 100 176 -214 706 200 14 0 chr3 192165729 192165906 -25871252 - AluJb SINE Alu 0 313 135 223 282 28 0 chr3 192166917 192166988 -25870170 - MER5A DNA MER1_type -2 187 115 180 196 109 0 chr3 192167012 192167058 -25870100 + L2 LINE L2 1656 1706 -1608 28 71 0 0 chr3 192167849 192167905 -25869253 + AT_rich Low_complexity Low_complexity 1 56 0 35 88 0 0 chr3 192168170 192168261 -25868897 + AT_rich Low_complexity Low_complexity 1 91 0 316 269 55 78 chr3 192168509 192168780 -25868378 + L1ME3A LINE L1 3429 3693 -2453 308 219 35 26 chr3 192168884 192168998 -25868160 + L1ME3A LINE L1 3895 4009 -2137 527 293 118 17 chr3 192169146 192169613 -25867545 + L1ME3A LINE L1 4186 4699 -1447 405 0 0 0 chr3 192170192 192170237 -25866921 + (TA)n Simple_repeat Simple_repeat 1 45 0 403 256 110 55 chr3 192170329 192170602 -25866556 + L1ME3A LINE L1 5100 5387 -759 2849 3 0 0 chr3 192170664 192170975 -25866183 + AluYa5 SINE Alu 1 311 0 231 299 73 68 chr3 192170979 192171114 -25866044 + L1ME3A LINE L1 5471 5609 -553 2241 117 0 0 chr3 192171114 192171421 -25865737 + AluSx SINE Alu 2 308 -4 231 299 73 68 chr3 192171421 192171462 -25865696 + L1ME3A LINE L1 5609 5648 -514 316 306 114 36 chr3 192171510 192171703 -25865455 + L1ME3A LINE L1 5688 5895 -275 336 262 27 13 chr3 192171719 192171868 -25865290 + (TA)n Simple_repeat Simple_repeat 2 152 0 605 310 83 16 chr3 192172311 192172624 -25864534 + HsTC2 DNA Tc2 538 871 -1027 866 254 58 32 chr3 192172890 192173237 -25863921 + L2 LINE L2 2881 3313 0 2273 103 3 0 chr3 192173359 192173660 -25863498 + AluSp SINE Alu 1 302 -11 650 232 157 5 chr3 192174123 192174468 -25862690 - LTR33A LTR ERVL -20 503 55 180 0 0 0 chr3 192175554 192175574 -25861584 + (A)n Simple_repeat Simple_repeat 1 20 0 510 217 241 6 chr3 192177744 192177910 -25859248 - MIR SINE MIR -22 240 36 2606 178 64 30 chr3 192177918 192178452 -25858706 - MLT2B3 LTR ERVL 0 554 3 341 93 19 0 chr3 192178532 192178586 -25858572 + (TC)n Simple_repeat Simple_repeat 2 56 0 1129 258 46 22 chr3 192178750 192179119 -25858039 + LTR16B LTR ERVL 7 384 -80 1290 129 17 17 chr3 192179175 192179407 -25857751 - L1MA8 LINE L1 -16 6275 6044 1750 152 52 33 chr3 192179656 192180024 -25857134 + THE1C LTR MaLR 1 375 0 261 133 0 100 chr3 192181111 192181171 -25855987 - L1 LINE L1 -1265 4881 4828 3491 185 33 7 chr3 192181185 192181911 -25855247 + L1MA8 LINE L1 5544 6288 -3 424 235 11 28 chr3 192182566 192182745 -25854413 + (TA)n Simple_repeat Simple_repeat 2 177 0 189 197 0 0 chr3 192182818 192182879 -25854279 + (TA)n Simple_repeat Simple_repeat 1 61 0 297 128 0 0 chr3 192182914 192182961 -25854197 + (CA)n Simple_repeat Simple_repeat 2 48 0 211 143 24 0 chr3 192182976 192183018 -25854140 + (TA)n Simple_repeat Simple_repeat 2 44 0 189 344 33 0 chr3 192183500 192183561 -25853597 + L2 LINE L2 3128 3190 -82 180 324 29 0 chr3 192183702 192183770 -25853388 + L2 LINE L2 2734 2803 -511 477 317 21 0 chr3 192184268 192184413 -25852745 + MIR SINE MIR 65 212 -50 22 0 0 0 chr3 192184444 192184466 -25852692 + AT_rich Low_complexity Low_complexity 1 22 0 37 23 0 0 chr3 192186542 192186586 -25850572 + AT_rich Low_complexity Low_complexity 1 44 0 1581 120 0 0 chr3 192186640 192186849 -25850309 - AluSg/x SINE Alu -18 292 84 294 29 0 0 chr3 192187929 192187964 -25849194 + (TC)n Simple_repeat Simple_repeat 2 36 0 570 297 73 14 chr3 192188141 192188360 -25848798 - MIR SINE MIR 0 262 31 2594 89 19 0 chr3 192188370 192188742 -25848416 - L1PA13 LINE L1 0 6163 5785 1579 74 8 57 chr3 192188749 192188993 -25848165 - L1PA10 LINE L1 -2 6166 5935 461 188 70 23 chr3 192189284 192189488 -25847670 + MSTA LTR MaLR 87 349 -77 24 32 0 0 chr3 192189748 192189779 -25847379 + AT_rich Low_complexity Low_complexity 1 31 0 1868 15 0 0 chr3 192189853 192190056 -25847102 + AluY SINE Alu 1 203 -108 584 67 0 0 chr3 192190056 192190131 -25847027 + AluYb8 SINE Alu 128 202 -116 1522 40 0 0 chr3 192190131 192190306 -25846852 + AluY SINE Alu 127 301 -10 383 306 8 60 chr3 192190536 192190670 -25846488 - L2 LINE L2 0 3272 3146 25 31 0 0 chr3 192191760 192191792 -25845366 + AT_rich Low_complexity Low_complexity 1 32 0 305 255 143 12 chr3 192192231 192192392 -25844766 - L1M4 LINE L1 -1549 4597 4416 536 251 90 78 chr3 192192510 192192765 -25844393 + MLT1D LTR MaLR 14 271 -234 * 717 128 0 0 chr3 192192762 192192871 -25844287 + MLT1D LTR MaLR 395 503 -2 302 296 65 54 chr3 192192892 192192979 -25844179 - L1M4 LINE L1 -1858 4288 4203 1378 196 63 21 chr3 192192979 192193264 -25843894 + AluSx SINE Alu 2 298 -14 302 296 65 54 chr3 192193264 192193362 -25843796 - L1M4 LINE L1 -1943 4203 4101 294 190 0 0 chr3 192193523 192193581 -25843577 + L2 LINE L2 2282 2339 -975 43050 45 4 7 chr3 192193606 192199749 -25837409 - L1PA5 LINE L1 -16 6138 18 1318 302 135 24 chr3 192199750 192200622 -25836536 + L2 LINE L2 2325 3304 -9 21 36 0 0 chr3 192201103 192201131 -25836027 + AT_rich Low_complexity Low_complexity 1 28 0 2002 126 31 0 chr3 192201156 192201442 -25835716 - AluSx SINE Alu -17 295 1 302 318 112 6 chr3 192201919 192202098 -25835060 - L1MDa LINE L1 -4439 2101 1904 270 255 64 37 chr3 192202311 192202499 -25834659 + L1ME3 LINE L1 913 1105 -5014 2237 116 51 20 chr3 192202563 192202916 -25834242 + THE1B LTR MaLR 1 364 0 11318 92 17 3 chr3 192202916 192204473 -25832685 + THE1B-int LTR MaLR 1 1580 0 2253 116 48 20 chr3 192204474 192204827 -25832331 + THE1B LTR MaLR 2 364 0 453 277 102 98 chr3 192206961 192207286 -25829872 + L1ME LINE L1 5486 5811 -351 289 314 17 8 chr3 192207349 192207467 -25829691 + (CATATA)n Simple_repeat Simple_repeat 4 122 0 278 246 0 15 chr3 192210192 192210257 -25826901 + (TG)n Simple_repeat Simple_repeat 2 65 0 616 264 149 3 chr3 192210261 192210643 -25826515 + L1ME3 LINE L1 2580 3017 -3112 1019 276 62 6 chr3 192210699 192211227 -25825931 + L1ME3 LINE L1 3121 3678 -2451 371 307 98 3 chr3 192211296 192211592 -25825566 + L1ME3 LINE L1 4459 4782 -1347 635 262 100 52 chr3 192211674 192212353 -25824805 + L1ME3 LINE L1 4941 5655 -498 6457 129 20 33 chr3 192212373 192213486 -25823672 + Tigger1 DNA MER2_type 1 1098 -1320 2064 201 15 78 chr3 192213486 192213725 -25823433 + MLT2B3 LTR ERVL 1 189 -365 297 0 0 0 chr3 192213725 192213758 -25823400 + (TC)n Simple_repeat Simple_repeat 1 33 0 2064 201 15 78 chr3 192213758 192214056 -25823102 + MLT2B3 LTR ERVL 189 504 -50 516 32 0 0 chr3 192214061 192214123 -25823035 + (CA)n Simple_repeat Simple_repeat 2 63 0 7244 143 30 7 chr3 192214130 192215220 -25821938 + Tigger1 DNA MER2_type 1152 2275 -143 2113 182 87 11 chr3 192215220 192215693 -25821465 - LTR22 LTR ERVK 0 509 1 7244 143 30 7 chr3 192215693 192215828 -25821330 + Tigger1 DNA MER2_type 2275 2405 -13 480 253 123 63 chr3 192215854 192215924 -25821234 + L1ME3 LINE L1 5681 5745 -408 1485 230 62 29 chr3 192215924 192216376 -25820782 - MLT1C LTR MaLR 0 467 1 480 253 123 63 chr3 192216376 192216605 -25820553 + L1ME3 LINE L1 5745 5998 -155 331 191 45 34 chr3 192216610 192216699 -25820459 + L1ME3 LINE L1 6032 6121 -24 24 53 0 0 chr3 192216933 192216971 -25820187 + AT_rich Low_complexity Low_complexity 1 38 0 1305 240 54 33 chr3 192217028 192218147 -25819011 - L1ME1 LINE L1 -5 6161 5001 677 100 0 0 chr3 192218173 192218263 -25818895 - L1PA7 LINE L1 -27 6127 6038 1562 100 5 0 chr3 192218555 192218755 -25818403 - AluSp SINE Alu -110 203 3 11191 208 33 18 chr3 192218757 192221513 -25815645 - L1 LINE L1 -1155 4991 2194 25 0 0 0 chr3 192222211 192222236 -25814922 + AT_rich Low_complexity Low_complexity 1 25 0 292 237 53 0 chr3 192222442 192222518 -25814640 + MIR SINE MIR 117 196 -66 711 196 7 0 chr3 192223103 192223251 -25813907 + L1MB7 LINE L1 6026 6174 -10 366 309 64 27 chr3 192223379 192223567 -25813591 + MIR SINE MIR 68 262 0 24 32 0 0 chr3 192224200 192224231 -25812927 + AT_rich Low_complexity Low_complexity 1 31 0 271 335 49 37 chr3 192224302 192224506 -25812652 - MIR SINE MIR -16 246 38 14757 203 42 8 chr3 192224806 192225163 -25811995 - L1PB1 LINE L1 0 6867 6523 529 82 10 20 chr3 192225163 192225261 -25811897 + (TAGA)n Simple_repeat Simple_repeat 2 98 0 14757 203 42 8 chr3 192225261 192231385 -25805773 - L1PB1 LINE L1 -344 6523 6 1994 89 3 21 chr3 192231579 192231861 -25805297 - L1PA8A LINE L1 0 6131 5855 1816 172 7 0 chr3 192232438 192232740 -25804418 + AluJo SINE Alu 1 304 -8 484 268 118 32 chr3 192232891 192233878 -25803280 + HAL1b LINE L1 109 1225 -123 2477 72 3 0 chr3 192233897 192234201 -25802957 + AluSp SINE Alu 1 305 -8 440 292 6 29 chr3 192234639 192234810 -25802348 + GA-rich Low_complexity Low_complexity 1 167 0 1537 205 0 31 chr3 192235392 192235714 -25801444 - AluJb SINE Alu 0 312 1 186 333 0 0 chr3 192235797 192235842 -25801316 - L2 LINE L2 -15 3257 3213 910 240 66 88 chr3 192235872 192236188 -25800970 + MLT2B1 LTR ERVL 167 476 -44 532 86 11 11 chr3 192236188 192236281 -25800877 + (TCTA)n Simple_repeat Simple_repeat 1 93 0 910 240 66 88 chr3 192236281 192236326 -25800832 + MLT2B1 LTR ERVL 476 520 0 253 235 112 0 chr3 192236466 192236564 -25800594 - MER5A DNA MER1_type -77 112 4 413 281 62 45 chr3 192238509 192238687 -25798471 - MIR SINE MIR -6 256 76 357 263 197 3 chr3 192238828 192239117 -25798041 - L1ME4a LINE L1 -3 6118 5774 235 358 134 8 chr3 192239212 192239346 -25797812 + MIR3 SINE MIR 58 208 0 198 71 0 0 chr3 192239897 192239925 -25797233 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 2361 137 72 8 chr3 192241577 192241979 -25795179 + MSTA LTR MaLR 1 428 0 247 228 228 0 chr3 192242900 192243027 -25794131 - L1ME4a LINE L1 -5 6116 5961 359 163 12 0 chr3 192243463 192243543 -25793615 + CT-rich Low_complexity Low_complexity 2 82 0 2011 143 32 40 chr3 192243999 192244377 -25792781 - THE1C LTR MaLR 0 375 1 204 263 79 53 chr3 192246852 192246928 -25790230 + L2 LINE L2 3170 3247 -25 32 43 0 0 chr3 192246958 192247004 -25790154 + AT_rich Low_complexity Low_complexity 1 46 0 1439 187 40 107 chr3 192247295 192247637 -25789521 - MLT1A1 LTR MaLR 0 365 61 2140 105 3 3 chr3 192247637 192247931 -25789227 - AluSp SINE Alu -17 296 3 1439 187 40 107 chr3 192247931 192247989 -25789169 - MLT1A1 LTR MaLR -304 61 1 26 30 0 0 chr3 192248221 192248254 -25788904 + AT_rich Low_complexity Low_complexity 1 33 0 2254 153 49 40 chr3 192248883 192249352 -25787806 - MER31A LTR ERV1 0 485 13 2199 104 3 10 chr3 192249730 192250028 -25787130 - AluSx SINE Alu -14 298 3 1486 116 58 0 chr3 192250107 192250348 -25786810 + L1MA4A LINE L1 6045 6299 -4 33 43 0 0 chr3 192250374 192250421 -25786737 + AT_rich Low_complexity Low_complexity 1 47 0 230 254 15 15 chr3 192250821 192250888 -25786270 + GA-rich Low_complexity Low_complexity 5 71 0 688 232 153 0 chr3 192250907 192251084 -25786074 - MIR SINE MIR -28 234 31 1880 205 142 51 chr3 192251192 192251782 -25785376 - LTR9B LTR ERV1 0 644 1 52691 142 18 5 chr3 192251783 192259854 -25777304 - HUERS-P3 LTR ERV1 0 8919 750 3001 214 22 25 chr3 192259888 192260523 -25776635 - HUERS-P3 LTR ERV1 -8286 633 1 2294 174 144 38 chr3 192260524 192261106 -25776052 - LTR9B LTR ERV1 0 644 1 468 321 36 0 chr3 192261327 192261467 -25775691 + HAL1 LINE L1 743 887 -1620 216 0 0 0 chr3 192261476 192261500 -25775658 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2351 245 45 20 chr3 192261590 192261610 -25775548 + L1ME1 LINE L1 4727 4745 -1421 1737 185 4 0 chr3 192261610 192261921 -25775237 + AluJb SINE Alu 1 312 0 2351 245 45 20 chr3 192261921 192263155 -25774003 + L1ME1 LINE L1 4745 6002 -164 2293 224 41 7 chr3 192263292 192263880 -25773278 + L1MC3 LINE L1 7169 7776 -9 296 283 7 22 chr3 192263894 192264032 -25773126 + HAL1b LINE L1 1210 1345 -3 390 294 52 33 chr3 192264297 192264508 -25772650 - MLT1H LTR MaLR -288 261 47 216 265 26 68 chr3 192265059 192265176 -25771982 + MIR SINE MIR 101 212 -50 22 0 0 0 chr3 192265209 192265231 -25771927 + AT_rich Low_complexity Low_complexity 1 22 0 2741 156 17 8 chr3 192265928 192266408 -25770750 - LTR29 LTR ERV1 -2 620 137 613 257 20 59 chr3 192267138 192267340 -25769818 - LTR26 LTR ERV1 -14 589 396 722 249 0 11 chr3 192267763 192267952 -25769206 - L1PB1 LINE L1 -166 5985 5799 526 129 40 0 chr3 192267954 192268055 -25769103 + GA-rich Low_complexity Low_complexity 2 106 0 194 257 46 92 chr3 192268856 192268965 -25768193 + MIR3 SINE MIR 11 114 -94 308 297 50 0 chr3 192268965 192269066 -25768092 + MIR SINE MIR 157 262 0 232 224 20 0 chr3 192269441 192269490 -25767668 + L2 LINE L2 3245 3294 -19 373 369 0 0 chr3 192269502 192269624 -25767534 - L2 LINE L2 -5 3308 3187 1464 195 14 7 chr3 192269793 192270070 -25767088 + AluJo SINE Alu 11 289 -23 1215 296 62 43 chr3 192270199 192270733 -25766425 - LTR26 LTR ERV1 -59 544 1 291 294 137 0 chr3 192270733 192270879 -25766279 + MIR SINE MIR 58 223 -39 1419 162 82 19 chr3 192272207 192272644 -25764514 - LTR54 LTR ERV1 0 510 1 427 289 0 31 chr3 192272717 192272845 -25764313 + MIR3 SINE MIR 84 207 -1 258 176 189 0 chr3 192274436 192274510 -25762648 - MER5C DNA MER1_type -236 88 1 2236 171 16 11 chr3 192276585 192276954 -25760204 - MSTB LTR MaLR -53 373 3 296 276 41 31 chr3 192277058 192277166 -25759992 - MER5A DNA MER1_type 0 189 70 386 125 0 0 chr3 192277409 192277473 -25759685 - Tigger1 DNA MER2_type -158 2260 2197 12319 163 47 43 chr3 192277475 192280627 -25756531 + L1M1 LINE L1 18 3156 -4409 1603 168 18 14 chr3 192280627 192280912 -25756246 + AluSx SINE Alu 1 286 -26 12319 163 47 43 chr3 192280912 192281041 -25756117 + L1M1 LINE L1 3156 3283 -4282 230 0 0 32 chr3 192281041 192281072 -25756086 + (TAA)n Simple_repeat Simple_repeat 3 32 0 12319 163 47 43 chr3 192281072 192282698 -25754460 + L1M1 LINE L1 3283 5606 -1959 509 298 19 6 chr3 192284194 192284352 -25752806 - MER69A DNA AcHobo 0 177 18 590 269 46 11 chr3 192284537 192284712 -25752446 + MIR SINE MIR 8 188 -74 4681 165 121 6 chr3 192284723 192285752 -25751406 + L1PB1 LINE L1 3 1149 -5714 9143 214 36 67 chr3 192285764 192291588 -25745570 + L1PB1 LINE L1 1311 6861 -6 188 361 56 37 chr3 192293077 192293185 -25743973 - L2 LINE L2 -1 3271 3162 1308 244 100 46 chr3 192293218 192293786 -25743372 + MLT1E2 LTR MaLR 1 624 0 1107 239 119 23 chr3 192293923 192294382 -25742776 + L1ME1 LINE L1 5639 6137 -29 1856 187 0 0 chr3 192294601 192294895 -25742263 + AluJo SINE Alu 1 294 -18 2100 72 65 3 chr3 192294966 192295258 -25741900 - L1PA7 LINE L1 -8 6146 5837 2710 88 3 0 chr3 192296002 192296356 -25740802 - THE1A LTR MaLR 0 355 1 10627 96 17 10 chr3 192296360 192297918 -25739240 - THE1A-int LTR MaLR -11 1569 1 2728 66 20 0 chr3 192297918 192298266 -25738892 - THE1A LTR MaLR 0 355 1 535 305 64 69 chr3 192298887 192299546 -25737612 + L2 LINE L2 2619 3264 -8 280 227 295 27 chr3 192300360 192300655 -25736503 + HAL1 LINE L1 2062 2435 -72 775 211 76 162 chr3 192300688 192301527 -25735631 - LTR41 LTR ERVL -6 767 1 1639 156 68 26 chr3 192301664 192302016 -25735142 - THE1C LTR MaLR 0 375 9 344 274 153 4 chr3 192302859 192303028 -25734130 + MIR SINE MIR 3 204 -56 198 300 0 17 chr3 192303191 192303251 -25733907 + L2 LINE L2 3251 3309 -4 198 321 143 27 chr3 192303753 192303865 -25733293 + MIR SINE MIR 26 150 -112 306 222 0 0 chr3 192304426 192304489 -25732669 + MIR SINE MIR 174 236 -26 360 331 28 0 chr3 192304708 192304853 -25732305 + MIR3 SINE MIR 49 197 -11 237 359 92 7 chr3 192306526 192306668 -25730490 + MIR SINE MIR 46 199 -63 210 271 51 0 chr3 192306719 192306778 -25730380 - MIR SINE MIR -66 142 81 26 0 0 0 chr3 192306871 192306897 -25730261 + AT_rich Low_complexity Low_complexity 1 26 0 645 154 41 16 chr3 192306897 192307020 -25730138 - FLAM_C SINE Alu -17 126 1 225 277 64 21 chr3 192307025 192307119 -25730039 + MER5A DNA MER1_type 47 144 -45 23 0 0 0 chr3 192307367 192307390 -25729768 + AT_rich Low_complexity Low_complexity 1 23 0 682 269 230 0 chr3 192307733 192307990 -25729168 - L2 LINE L2 -492 2822 2507 221 140 80 0 chr3 192308113 192308163 -25728995 + (TATAA)n Simple_repeat Simple_repeat 2 55 0 648 251 148 27 chr3 192310195 192310418 -25726740 - MIR SINE MIR -4 258 9 8591 57 2 5 chr3 192312721 192313795 -25723363 + MER11C LTR ERVK 1 1071 0 1266 26 7 0 chr3 192313804 192313959 -25723199 - MER11B LTR ERVK -1080 156 1 286 339 66 0 chr3 192318268 192318389 -25718769 + MIR SINE MIR 24 152 -110 2369 63 0 3 chr3 192318538 192318825 -25718333 + AluY SINE Alu 25 310 -1 25 65 0 0 chr3 192319128 192319174 -25717984 + AT_rich Low_complexity Low_complexity 1 46 0 616 244 29 41 chr3 192319449 192319621 -25717537 - MER5B DNA MER1_type -8 170 1 2431 97 0 0 chr3 192320708 192321017 -25716141 + AluSc SINE Alu 1 309 0 237 167 64 64 chr3 192321430 192321508 -25715650 + MLT1K LTR MaLR 511 588 0 1385 196 27 27 chr3 192321837 192322133 -25715025 + AluJo SINE Alu 1 296 -16 28 79 0 0 chr3 192323077 192323140 -25714018 + AT_rich Low_complexity Low_complexity 1 63 0 682 186 221 6 chr3 192323201 192323373 -25713785 - MER3 DNA MER1_type 0 209 1 252 86 0 0 chr3 192324926 192324961 -25712197 + (TTTG)n Simple_repeat Simple_repeat 4 38 0 383 311 113 38 chr3 192325693 192325834 -25711324 + MIR SINE MIR 34 198 -64 1929 128 60 0 chr3 192325834 192326115 -25711043 + AluSg SINE Alu 1 298 -12 383 311 113 38 chr3 192326115 192326185 -25710973 + MIR SINE MIR 198 261 -1 312 324 17 40 chr3 192326232 192326405 -25710753 - L1MC/D LINE L1 -2144 5664 5496 520 315 39 11 chr3 192326405 192326583 -25710575 - MIR SINE MIR -61 201 19 654 180 14 36 chr3 192327128 192327267 -25709891 + MER97c DNA MER1_type? 39 174 -916 398 276 112 13 chr3 192330305 192330457 -25706701 + MER5A DNA MER1_type 1 167 -22 194 250 0 39 chr3 192330594 192330646 -25706512 - L2 LINE L2 -655 2659 2610 * 385 316 145 30 chr3 192330645 192331018 -25706140 + L2 LINE L2 1973 2388 -926 483 257 62 43 chr3 192332075 192332285 -25704873 - MIR SINE MIR -42 220 7 2247 223 14 41 chr3 192332848 192333432 -25703726 + L1ME LINE L1 1 568 -5974 2326 201 47 66 chr3 192333437 192334119 -25703039 + L1MB7 LINE L1 5500 6168 -16 427 310 5 48 chr3 192334210 192334397 -25702761 + MIR3 SINE MIR 26 204 -4 448 241 62 18 chr3 192334490 192334602 -25702556 - L2 LINE L2 -12 3301 3185 1709 194 3 0 chr3 192335485 192335773 -25701385 + AluJo SINE Alu 13 301 -11 623 311 81 25 chr3 192336785 192337145 -25700013 + L1ME LINE L1 895 1274 -5360 349 271 95 76 chr3 192337156 192337366 -25699792 + L1ME LINE L1 1322 1535 -5099 2409 77 0 0 chr3 192337589 192337888 -25699270 + AluY SINE Alu 4 302 -9 24 0 0 0 chr3 192337890 192337914 -25699244 + AT_rich Low_complexity Low_complexity 1 24 0 261 302 139 24 chr3 192337917 192338334 -25698824 + L1ME LINE L1 4881 5345 -1299 547 295 106 30 chr3 192338526 192338693 -25698465 + L1ME LINE L1 5483 5636 -1024 339 25 0 0 chr3 192338693 192338733 -25698425 + (CA)n Simple_repeat Simple_repeat 2 41 0 547 295 106 30 chr3 192338733 192339281 -25697877 + L1ME LINE L1 5636 6267 -393 467 254 18 0 chr3 192339331 192339441 -25697717 + MER33 DNA MER1_type 5 116 -208 1246 216 0 0 chr3 192340735 192340957 -25696201 - MER58A DNA MER1_type -1 223 2 200 281 35 0 chr3 192341763 192341820 -25695338 + MIR SINE MIR 44 102 -106 2298 104 0 7 chr3 192345493 192345791 -25691367 + AluSp SINE Alu 1 296 -17 2278 81 13 3 chr3 192346052 192346350 -25690808 + AluY SINE Alu 1 301 -10 2148 147 31 24 chr3 192346443 192346824 -25690334 + Tigger2a DNA MER2_type 1 384 -50 567 279 162 14 chr3 192347045 192347267 -25689891 + L3 LINE CR1 1305 1559 -18 455 294 68 63 chr3 192348608 192349001 -25688157 + HAL1b LINE L1 65 411 -937 3479 238 53 30 chr3 192349012 192349951 -25687207 + L1M3f LINE L1 1253 2213 -4352 285 152 197 0 chr3 192349954 192350020 -25687138 + L1M3f LINE L1 3519 3597 -3968 321 369 36 36 chr3 192350021 192350273 -25686885 + HAL1 LINE L1 1488 1739 -768 206 180 0 40 chr3 192350432 192350482 -25686676 + A-rich Low_complexity Low_complexity 6 53 0 2350 90 48 8 chr3 192350498 192350853 -25686305 + L1PB1 LINE L1 5783 6151 0 349 264 90 28 chr3 192351541 192351719 -25685439 + L1M4 LINE L1 5209 5397 -749 339 77 0 46 chr3 192351876 192351941 -25685217 + L1PB1 LINE L1 5981 6042 -109 1990 133 14 27 chr3 192352038 192352406 -25684752 + L1MA3 LINE L1 5943 6305 0 511 198 9 60 chr3 192352427 192352543 -25684615 + MLT1A1 LTR MaLR 85 194 -171 605 234 6 44 chr3 192352550 192352708 -25684450 + MLT1A1 LTR MaLR 162 313 -52 25 0 0 0 chr3 192352708 192352733 -25684425 + AT_rich Low_complexity Low_complexity 1 25 0 5914 57 18 3 chr3 192354657 192354686 -25682472 + L1PA7 LINE L1 5352 5379 -790 225 0 0 0 chr3 192354686 192354711 -25682447 + (TA)n Simple_repeat Simple_repeat 2 26 0 5914 57 18 3 chr3 192354711 192355487 -25681671 + L1PA7 LINE L1 5379 6169 0 386 74 0 0 chr3 192356329 192356383 -25680775 - MADE1 DNA Mariner 0 80 27 517 312 60 53 chr3 192356434 192356730 -25680428 + L2 LINE L2 1116 1418 -1896 2387 57 0 0 chr3 192356730 192357041 -25680117 + AluY SINE Alu 2 312 0 517 312 60 53 chr3 192357041 192357140 -25680018 + L2 LINE L2 1418 1515 -1799 1597 183 0 0 chr3 192357932 192358247 -25678911 - AluJb SINE Alu 0 328 14 243 303 74 25 chr3 192360080 192360202 -25676956 - MIR SINE MIR -132 130 3 2929 229 59 22 chr3 192360478 192361513 -25675645 + L1ME1 LINE L1 5031 6114 -52 21 0 0 0 chr3 192361573 192361594 -25675564 + AT_rich Low_complexity Low_complexity 1 21 0 203 162 0 27 chr3 192361633 192361670 -25675488 + GA-rich Low_complexity Low_complexity 1 36 0 24 77 0 0 chr3 192362114 192362166 -25674992 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr3 192362229 192362250 -25674908 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 192362515 192362538 -25674620 + AT_rich Low_complexity Low_complexity 1 23 0 232 318 15 0 chr3 192363345 192363411 -25673747 + L2 LINE L2 3203 3269 -3 685 285 140 17 chr3 192363505 192363968 -25673190 + L1ME4a LINE L1 5508 6027 -94 461 258 16 0 chr3 192364107 192364235 -25672923 + MER90 LTR ERV1 206 335 -240 457 304 37 32 chr3 192364297 192364514 -25672644 + MER90 LTR ERV1 384 601 -13 347 227 0 25 chr3 192364520 192364639 -25672519 + (ATGGTG)n Simple_repeat Simple_repeat 2 117 0 598 317 24 6 chr3 192364756 192364923 -25672235 + MIR3 SINE MIR 3 172 -36 895 229 23 6 chr3 192365003 192365178 -25671980 + MER58A DNA MER1_type 37 214 -10 360 284 98 0 chr3 192365268 192365370 -25671788 + L2 LINE L2 3161 3272 0 740 157 0 22 chr3 192365940 192366074 -25671084 - FLAM_C SINE Alu -2 131 1 1871 160 11 42 chr3 192366109 192366465 -25670693 - MLT2D LTR ERVL -69 345 1 278 241 84 0 chr3 192367552 192367635 -25669523 - MLT1K LTR MaLR -3 585 496 195 379 0 0 chr3 192367935 192368001 -25669157 + L2 LINE L2 3247 3312 -1 290 337 0 0 chr3 192368431 192368532 -25668626 + (CATA)n Simple_repeat Simple_repeat 4 104 0 22 35 0 0 chr3 192368980 192369009 -25668149 + AT_rich Low_complexity Low_complexity 1 29 0 189 121 0 0 chr3 192369612 192369645 -25667513 + (TG)n Simple_repeat Simple_repeat 2 34 0 214 268 0 0 chr3 192369753 192369809 -25667349 + L2 LINE L2 3246 3301 -12 316 379 7 0 chr3 192369920 192370065 -25667093 - MIR SINE MIR -6 256 111 275 300 96 41 chr3 192370065 192370335 -25666823 + L2 LINE L2 2927 3211 -102 221 150 0 0 chr3 192370513 192370553 -25666605 - MIR SINE MIR -14 248 209 343 310 176 48 chr3 192370858 192371630 -25665528 - L2 LINE L2 -457 2857 1987 2077 106 0 50 chr3 192371967 192372288 -25664870 + AluSx SINE Alu 1 305 -7 180 0 0 0 chr3 192373799 192373819 -25663339 + (TA)n Simple_repeat Simple_repeat 2 21 0 353 291 66 16 chr3 192373822 192374004 -25663154 + MLT1L LTR MaLR 414 604 -11 205 269 67 67 chr3 192374673 192374807 -25662351 - L2 LINE L2 -2858 456 323 2452 55 7 0 chr3 192375208 192375501 -25661657 + AluY SINE Alu 1 295 -16 915 247 75 43 chr3 192376089 192376530 -25660628 + L1MC5 LINE L1 7196 7650 -311 657 186 115 27 chr3 192376575 192376758 -25660400 + L1MC5 LINE L1 7713 7911 -50 2173 86 7 10 chr3 192377076 192377550 -25659608 + AluSg SINE Alu 5 477 0 1453 175 33 82 chr3 192378120 192378548 -25658610 + LTR37A LTR ERV1 20 426 0 222 252 173 29 chr3 192379875 192380014 -25657144 - L2 LINE L2 -921 2393 2235 180 0 0 0 chr3 192380240 192380260 -25656898 + (A)n Simple_repeat Simple_repeat 1 20 0 23 33 0 0 chr3 192380571 192380601 -25656557 + AT_rich Low_complexity Low_complexity 1 30 0 631 275 69 16 chr3 192382511 192382758 -25654400 - MIR SINE MIR 0 262 3 313 357 114 0 chr3 192383044 192383184 -25653974 + L2 LINE L2 3117 3272 0 251 347 129 0 chr3 192384265 192384389 -25652769 + L2 LINE L2 3133 3272 0 524 194 81 16 chr3 192384620 192384744 -25652414 - MLT1D LTR MaLR 0 505 374 * 1140 222 63 40 chr3 192384729 192385126 -25652032 - Charlie4a DNA MER1_type -90 418 13 303 241 139 60 chr3 192385224 192385363 -25651795 + L1MC3 LINE L1 65 220 -5825 1318 114 100 5 chr3 192385363 192385573 -25651585 - MER30 DNA MER1_type 0 230 1 303 241 139 60 chr3 192385573 192385599 -25651559 + L1MC3 LINE L1 220 243 -5802 2324 238 70 58 chr3 192385604 192387510 -25649648 + L1MC3 LINE L1 1178 3293 -3271 * 6319 90 2 2 chr3 192387511 192388809 -25648349 - L1PA10 LINE L1 -12 6156 4854 7375 123 3 6 chr3 192388809 192389947 -25647211 + L1PA10 LINE L1 3704 4839 -1307 29 0 0 0 chr3 192389955 192389984 -25647174 + AT_rich Low_complexity Low_complexity 1 29 0 5089 134 28 2 chr3 192389984 192390817 -25646341 - L1PA16 LINE L1 -9 6157 5304 3841 236 35 49 chr3 192390817 192391152 -25646006 + L1MC3 LINE L1 3285 3623 -2941 1709 154 3 37 chr3 192391152 192391450 -25645708 + AluJb SINE Alu 1 288 -24 3841 236 35 49 chr3 192391450 192391733 -25645425 + L1MC3 LINE L1 3623 3909 -2655 1155 204 20 101 chr3 192391733 192392140 -25645018 + MLT1A2 LTR MaLR 1 374 0 3841 236 35 49 chr3 192392140 192392844 -25644314 + L1MC3 LINE L1 3909 4587 -1977 1830 194 19 8 chr3 192392844 192393205 -25643953 + MLT1A1 LTR MaLR 1 365 0 3841 236 35 49 chr3 192393205 192393362 -25643796 + L1MC3 LINE L1 4587 4745 -1819 2326 193 18 41 chr3 192393363 192393872 -25643286 - MLT1D LTR MaLR -8 497 1 7246 220 64 17 chr3 192393872 192394825 -25642333 + L1MC3 LINE L1 4757 5663 -2540 1944 126 42 6 chr3 192394825 192395158 -25642000 + L1PA16 LINE L1 5813 6157 -9 7246 220 64 17 chr3 192395158 192396798 -25640360 + L1MC3 LINE L1 5663 7474 -729 1843 158 20 0 chr3 192397058 192397350 -25639808 + AluSx SINE Alu 1 298 -14 333 329 111 26 chr3 192397390 192397767 -25639391 + L1ME4a LINE L1 5317 5725 -2083 270 0 0 0 chr3 192397822 192397852 -25639306 + (CA)n Simple_repeat Simple_repeat 2 31 0 2227 109 13 0 chr3 192397898 192398201 -25638957 + AluSg SINE Alu 1 307 -3 457 245 0 10 chr3 192398316 192398418 -25638740 - MLT1I LTR MaLR 0 409 309 246 373 24 8 chr3 192398596 192398722 -25638436 - MLT1I LTR MaLR -107 302 175 485 33 0 16 chr3 192398950 192399011 -25638147 - MER4E LTR ERV1 -29 737 678 307 252 133 44 chr3 192399225 192399360 -25637798 - MIR SINE MIR -68 194 48 819 269 149 15 chr3 192399501 192399843 -25637315 + LTR16B LTR ERVL 77 464 0 30 27 0 0 chr3 192401595 192401632 -25635526 + AT_rich Low_complexity Low_complexity 1 37 0 243 281 75 6 chr3 192402208 192402368 -25634790 + L1ME4a LINE L1 5800 5970 -151 822 275 82 20 chr3 192402468 192402810 -25634348 - MLT1I LTR MaLR 0 409 47 1103 307 115 20 chr3 192403341 192404120 -25633038 - L2 LINE L2 -12 3301 2452 750 169 0 15 chr3 192404333 192404463 -25632695 - FLAM_C SINE Alu -7 136 9 1657 184 79 28 chr3 192406485 192406828 -25630330 + MLT2D LTR ERVL 1 368 -46 602 26 13 0 chr3 192406828 192406904 -25630254 + (TCTA)n Simple_repeat Simple_repeat 1 77 0 1657 184 79 28 chr3 192406904 192406952 -25630206 + MLT2D LTR ERVL 368 412 -2 554 200 0 0 chr3 192407571 192407656 -25629502 + 5S rRNA rRNA 4 88 -33 330 353 60 15 chr3 192407660 192407861 -25629297 + HAL1b LINE L1 47 256 -1092 917 298 53 2 chr3 192407890 192408289 -25628869 + L1M4 LINE L1 3586 4004 -2142 501 145 0 0 chr3 192408299 192408375 -25628783 + L1MC4a LINE L1 6643 6718 -1090 981 223 28 35 chr3 192408375 192408657 -25628501 + L1MC4a LINE L1 7152 7431 -377 1061 203 23 109 chr3 192408657 192409081 -25628077 + MLT2D LTR ERVL 1 417 -47 1380 230 57 5 chr3 192409156 192409526 -25627632 + L1MD3 LINE L1 7599 7987 -8 15488 159 27 11 chr3 192410357 192412941 -25624217 + L1M1 LINE L1 17 2641 -4924 2253 83 0 0 chr3 192412941 192413217 -25623941 + AluSx SINE Alu 1 276 -36 1100 65 18 6 chr3 192413254 192413458 -25623700 + (GAAA)n Simple_repeat Simple_repeat 1 376 0 1100 65 18 6 chr3 192413458 192413626 -25623532 + (GAAA)n Simple_repeat Simple_repeat 2 171 0 883 78 20 13 chr3 192413647 192413800 -25623358 + (GAAA)n Simple_repeat Simple_repeat 4 157 0 851 145 13 21 chr3 192413905 192414134 -25623024 + GA-rich Low_complexity Low_complexity 1 227 0 3991 112 9 8 chr3 192414168 192414821 -25622337 + L1M1 LINE L1 2642 3295 -4270 4553 203 20 16 chr3 192414821 192415736 -25621422 - L1M1 LINE L1 -6560 1005 88 369 0 0 0 chr3 192415741 192415782 -25621376 + (TG)n Simple_repeat Simple_repeat 2 42 0 860 127 0 0 chr3 192415891 192416025 -25621133 - L1 LINE L1 -2325 3821 3688 263 229 0 0 chr3 192416023 192416071 -25621087 - L1 LINE L1 -3467 2679 2632 * 979 173 0 5 chr3 192416067 192416252 -25620906 + L1 LINE L1 3592 3775 -2371 4984 44 20 6 chr3 192416252 192416887 -25620271 + MER11B LTR ERVK 1 644 -592 464 311 58 5 chr3 192417222 192417412 -25619746 - MIR SINE MIR -7 255 56 648 282 5 36 chr3 192417658 192417853 -25619305 + MER5A DNA MER1_type 1 189 0 24 0 0 0 chr3 192420913 192420937 -25616221 + AT_rich Low_complexity Low_complexity 1 24 0 376 318 52 13 chr3 192421286 192421440 -25615718 + MIR3 SINE MIR 17 176 -32 654 304 102 75 chr3 192421450 192421901 -25615257 + MLT1J LTR MaLR 15 477 -34 195 308 0 0 chr3 192422011 192422063 -25615095 + MIR SINE MIR 81 132 -130 335 328 106 17 chr3 192424839 192425019 -25612139 - MIR SINE MIR -44 218 23 1629 199 31 0 chr3 192426038 192426329 -25610829 + AluJo SINE Alu 3 302 -10 4401 155 14 18 chr3 192426856 192428329 -25608829 - L1MA4 LINE L1 -288 6012 4544 242 347 169 0 chr3 192428384 192428508 -25608650 - L2 LINE L2 -2 3270 3126 571 285 162 38 chr3 192428528 192428973 -25608185 - MLT1H LTR MaLR -17 532 33 2289 110 0 0 chr3 192428981 192429291 -25607867 + AluSg SINE Alu 1 310 0 226 411 85 20 chr3 192429394 192429640 -25607518 - L2 LINE L2 -176 3096 2835 236 367 119 0 chr3 192429705 192429814 -25607344 + L2 LINE L2 3146 3267 -5 2574 27 0 3 chr3 192430006 192430303 -25606855 - AluY SINE Alu -15 296 1 264 233 47 47 chr3 192431208 192431294 -25605864 + L2 LINE L2 3225 3310 -3 940 89 16 0 chr3 192432645 192432769 -25604389 + AluSp SINE Alu 1 126 -187 1375 116 5 0 chr3 192432872 192433062 -25604096 + AluSp SINE Alu 110 300 -13 383 278 87 16 chr3 192433062 192433188 -25603970 - MIR3 SINE MIR -33 175 41 523 191 65 16 chr3 192433257 192433395 -25603763 - MIR SINE MIR -54 154 34 396 316 60 32 chr3 192434008 192434226 -25602932 + MIR SINE MIR 23 246 -16 221 261 67 67 chr3 192434375 192434509 -25602649 - MIR SINE MIR -79 183 50 2274 138 26 0 chr3 192434594 192434941 -25602217 + THE1B LTR MaLR 9 364 0 351 315 133 14 chr3 192435447 192435599 -25601559 + MIR SINE MIR 14 185 -23 1446 141 61 22 chr3 192436168 192436445 -25600713 - THE1C LTR MaLR -8 367 80 2033 122 75 0 chr3 192436555 192436890 -25600268 + L1PB1 LINE L1 5790 6149 -2 1068 152 0 67 chr3 192437558 192437782 -25599376 - L1PA13 LINE L1 0 6163 5955 210 328 86 8 chr3 192438388 192438516 -25598642 + L2 LINE L2 2717 2854 -460 362 349 96 6 chr3 192438655 192438821 -25598337 - MER5A DNA MER1_type 0 189 9 1441 140 36 0 chr3 192439491 192439712 -25597446 - MER30 DNA MER1_type 0 230 2 866 145 137 81 chr3 192441409 192441643 -25595515 - MER4B LTR ERV1 -334 276 30 652 105 0 98 chr3 192441708 192441841 -25595317 + MER4E LTR ERV1 479 598 -168 2461 122 23 5 chr3 192441852 192442431 -25594727 - MER4B-int LTR ERV1 0 6758 6093 2052 112 0 0 chr3 192442615 192442893 -25594265 - AluSg SINE Alu -14 296 19 381 131 0 0 chr3 192443579 192443640 -25593518 + (T)n Simple_repeat Simple_repeat 1 61 0 1829 153 0 28 chr3 192443833 192444158 -25593000 + AluSx SINE Alu 3 319 0 386 330 64 34 chr3 192444163 192444460 -25592698 + L2 LINE L2 2038 2343 -971 325 337 126 49 chr3 192444617 192444943 -25592215 + L2 LINE L2 2623 2973 -341 200 200 18 0 chr3 192445169 192445224 -25591934 + GA-rich Low_complexity Low_complexity 1 56 0 2506 232 28 34 chr3 192447430 192448138 -25589020 - L1ME3A LINE L1 0 6170 5467 213 303 86 86 chr3 192448844 192449042 -25588116 - L3 LINE CR1 -118 1459 1262 25 31 0 0 chr3 192449396 192449428 -25587730 + AT_rich Low_complexity Low_complexity 1 32 0 274 303 30 61 chr3 192451530 192451662 -25585496 + MIR SINE MIR 39 166 -96 224 311 178 7 chr3 192452744 192452879 -25584279 - MIR SINE MIR -92 170 13 1567 294 46 17 chr3 192455576 192456117 -25581041 + L2 LINE L2 1865 2421 -893 1293 112 28 5 chr3 192456303 192456518 -25580640 + L1PA13 LINE L1 5941 6160 -3 2211 112 0 3 chr3 192456530 192456826 -25580332 + AluSq SINE Alu 1 295 -18 1704 177 30 19 chr3 192457242 192457614 -25579544 - L1MA4 LINE L1 -5 6295 5920 6054 141 34 10 chr3 192457616 192459311 -25577847 - L1MA3 LINE L1 -53 6252 4507 727 119 63 0 chr3 192459396 192459539 -25577619 + L1 LINE L1 4259 4410 -1736 204 125 0 0 chr3 192459773 192459805 -25577353 + (A)n Simple_repeat Simple_repeat 1 32 0 351 0 0 0 chr3 192460767 192460806 -25576352 + (CA)n Simple_repeat Simple_repeat 2 40 0 319 209 0 15 chr3 192460817 192460884 -25576274 + Tigger1 DNA MER2_type 2 67 -2351 * 323 73 0 18 chr3 192460872 192460927 -25576231 + MADE1 DNA Mariner 27 80 0 * 881 203 6 17 chr3 192460927 192461086 -25576072 + Tigger1 DNA MER2_type 198 354 -2064 2246 102 3 0 chr3 192461494 192461789 -25575369 + AluSg SINE Alu 1 296 -14 2179 111 0 3 chr3 192461879 192462177 -25574981 + AluSg SINE Alu 1 297 -13 337 213 241 0 chr3 192462812 192462920 -25574238 - MER94 DNA DNA 0 134 1 514 204 32 159 chr3 192463490 192463863 -25573295 + L1MC4 LINE L1 7611 8042 0 1121 354 57 40 chr3 192463947 192464732 -25572426 + L2 LINE L2 2174 2972 -342 482 275 35 21 chr3 192464761 192464903 -25572255 - MIR SINE MIR -21 241 98 454 202 30 10 chr3 192464922 192465014 -25572144 + MLT1A2 LTR MaLR 1 94 -280 298 100 0 83 chr3 192465014 192465074 -25572084 - MLT2B1 LTR ERVL -1 519 465 1528 208 120 28 chr3 192465105 192465480 -25571678 - MLT2B1 LTR ERVL -20 534 83 17478 114 17 2 chr3 192465480 192468572 -25568586 + L1PA8A LINE L1 2636 5787 -344 11462 85 9 0 chr3 192468572 192470985 -25566173 + L1PA7 LINE L1 3728 6150 -4 17478 114 17 2 chr3 192470985 192471315 -25565843 + L1PA8A LINE L1 5787 6111 -20 559 161 0 0 chr3 192471338 192471431 -25565727 - MLT2B1 LTR ERVL -426 94 2 847 185 42 123 chr3 192471489 192471684 -25565474 + MLT1A2 LTR MaLR 186 370 -4 2102 184 125 15 chr3 192471767 192472370 -25564788 - MER39 LTR ERV1 0 707 1 2678 45 0 0 chr3 192472525 192472836 -25564322 - AluY SINE Alu 0 311 1 211 231 19 167 chr3 192472870 192472978 -25564180 - L2 LINE L2 -31 3282 3191 430 293 43 69 chr3 192473643 192473831 -25563327 - L2 LINE L2 -25 3288 3106 23 0 0 0 chr3 192473908 192473931 -25563227 + AT_rich Low_complexity Low_complexity 1 23 0 2247 117 0 10 chr3 192473932 192474240 -25562918 - AluSq SINE Alu -2 311 7 439 265 72 86 chr3 192474276 192474560 -25562598 + MLT1J2 LTR MaLR 50 323 -127 251 233 0 0 chr3 192475684 192475727 -25561431 - L3b LINE CR1 -245 1338 1296 469 347 71 32 chr3 192476203 192476638 -25560520 + L2 LINE L2 2817 3268 -4 2212 94 14 0 chr3 192476646 192476934 -25560224 - AluSx SINE Alu -20 292 1 27 0 0 0 chr3 192476942 192476969 -25560189 + AT_rich Low_complexity Low_complexity 1 27 0 553 191 48 96 chr3 192478081 192478269 -25558889 + MER112 DNA MER1_type 24 202 -58 2408 56 0 0 chr3 192478363 192478688 -25558470 + AluY SINE Alu 1 325 0 411 319 7 14 chr3 192478734 192478872 -25558286 + MIR SINE MIR 28 164 -98 214 205 0 0 chr3 192480918 192480957 -25556201 + MIR SINE MIR 210 248 -14 375 319 44 0 chr3 192481817 192481930 -25555228 + MIR SINE MIR 33 150 -112 681 234 65 85 chr3 192483969 192484217 -25552941 - MIR SINE MIR -11 251 9 229 221 44 142 chr3 192485022 192485135 -25552023 + L2 LINE L2 3144 3245 -27 515 305 135 46 chr3 192485137 192485725 -25551433 - L2 LINE L2 -1 3312 2674 342 288 135 24 chr3 192485795 192485965 -25551193 - L2 LINE L2 -365 2949 2761 319 248 124 25 chr3 192488419 192488540 -25548618 + MIR SINE MIR 12 144 -118 786 254 101 69 chr3 192488677 192489111 -25548047 - LTR68 LTR ERV1 -292 448 1 660 211 70 6 chr3 192489114 192489270 -25547888 + L1MC3 LINE L1 6460 6625 -1160 * 1116 144 5 54 chr3 192489265 192489487 -25547671 + L1MC3 LINE L1 7234 7444 -341 * 1451 244 89 36 chr3 192489483 192490365 -25546793 + L1ME1 LINE L1 5016 5946 -220 1703 167 7 14 chr3 192490786 192491080 -25546078 - AluJo SINE Alu -20 292 1 25 31 0 0 chr3 192491649 192491681 -25545477 + AT_rich Low_complexity Low_complexity 1 32 0 2565 226 57 33 chr3 192491705 192493097 -25544061 - L1ME1 LINE L1 -51 6509 5091 2251 246 127 34 chr3 192493088 192494508 -25542650 - L1ME1 LINE L1 -4093 2447 909 * 226 373 39 32 chr3 192495044 192495352 -25541806 - L1ME1 LINE L1 -6210 330 21 23 0 0 0 chr3 192495817 192495840 -25541318 + AT_rich Low_complexity Low_complexity 1 23 0 403 205 71 45 chr3 192497355 192497467 -25539691 - MIR3 SINE MIR -7 201 87 2244 124 28 25 chr3 192497645 192498008 -25539150 - THE1B LTR MaLR 0 364 1 197 299 26 39 chr3 192499325 192499402 -25537756 - MIR SINE MIR -122 140 65 432 37 0 0 chr3 192499670 192499724 -25537434 + (CA)n Simple_repeat Simple_repeat 2 55 0 345 154 0 0 chr3 192500295 192500347 -25536811 + polypurine Low_complexity Low_complexity 3 54 0 958 143 0 16 chr3 192500347 192500529 -25536629 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 293 285 19 13 chr3 192500491 192500649 -25536509 + GA-rich Low_complexity Low_complexity 3 161 0 * 532 265 159 0 chr3 192500858 192501009 -25536149 - MER5A DNA MER1_type -6 183 9 572 290 46 16 chr3 192503416 192503723 -25533435 + L1M4 LINE L1 4531 4846 -1300 428 239 254 0 chr3 192503770 192503900 -25533258 + MIR SINE MIR 6 168 -94 1230 253 30 9 chr3 192503907 192504235 -25532923 + MLT1F LTR MaLR 39 373 -169 273 207 0 52 chr3 192504423 192504481 -25532677 - L2 LINE L2 -9 3304 3250 6426 176 91 34 chr3 192505061 192506571 -25530587 + Tigger6b DNA MER2_type 2 1597 0 1912 138 45 0 chr3 192506605 192506896 -25530262 + AluSx SINE Alu 1 304 -8 293 312 152 0 chr3 192507183 192507308 -25529850 - L2 LINE L2 -1 3312 3169 252 269 77 0 chr3 192507319 192507397 -25529761 + MIR SINE MIR 125 208 -54 960 181 39 0 chr3 192507484 192507666 -25529492 + MER5A DNA MER1_type 1 189 0 44002 40 0 4 chr3 192508187 192514366 -25522792 + L1PA4 LINE L1 1 6155 0 961 67 30 0 chr3 192514413 192514547 -25522611 - L1PA8 LINE L1 0 6172 6035 209 286 48 0 chr3 192514688 192514751 -25522407 + L2 LINE L2 3207 3272 0 334 335 39 19 chr3 192514816 192514971 -25522187 - MIR SINE MIR -77 185 28 23 0 0 0 chr3 192516102 192516125 -25521033 + AT_rich Low_complexity Low_complexity 1 23 0 308 353 58 5 chr3 192516610 192516800 -25520358 - MIR SINE MIR -7 255 56 2646 43 3 0 chr3 192517054 192517379 -25519779 + MER11B LTR ERVK 911 1236 0 6494 139 25 10 chr3 192517379 192519684 -25517474 + L1MA3 LINE L1 3770 6305 0 21 0 0 0 chr3 192519684 192519705 -25517453 + AT_rich Low_complexity Low_complexity 1 21 0 1887 144 55 0 chr3 192519722 192520013 -25517145 - AluSx SINE Alu -3 309 3 442 330 22 11 chr3 192521771 192521953 -25515205 - MIR3 SINE MIR -2 206 23 2270 100 3 0 chr3 192522401 192522692 -25514466 + AluSg SINE Alu 1 292 -18 590 296 51 32 chr3 192523078 192523755 -25513403 - L1MEd LINE L1 -734 1656 368 423 0 0 0 chr3 192524372 192524419 -25512739 + (TAA)n Simple_repeat Simple_repeat 3 49 0 1558 261 41 5 chr3 192524429 192524797 -25512361 + MLT1I LTR MaLR 26 406 -3 25 31 0 0 chr3 192524808 192524840 -25512318 + AT_rich Low_complexity Low_complexity 1 32 0 245 211 0 18 chr3 192525260 192525317 -25511841 + CT-rich Low_complexity Low_complexity 2 57 0 22 35 0 0 chr3 192525875 192525904 -25511254 + AT_rich Low_complexity Low_complexity 1 29 0 214 339 0 0 chr3 192526090 192526146 -25511012 - L3 LINE CR1 -5 1572 1517 385 262 91 0 chr3 192526272 192526482 -25510676 - MER113 DNA MER1_type? -292 229 1 316 230 250 0 chr3 192526484 192526584 -25510574 - MIR3 SINE MIR -54 154 30 387 355 81 13 chr3 192527843 192528077 -25509081 - MIR SINE MIR -3 259 10 2326 106 0 0 chr3 192530524 192530827 -25506331 + AluSx SINE Alu 5 307 -5 285 224 0 15 chr3 192531720 192531787 -25505371 - MIR SINE MIR -121 141 76 2115 157 61 16 chr3 192531810 192532187 -25504971 - MER61D LTR ERV1 -2 499 106 227 283 17 50 chr3 192532339 192532459 -25504699 + L1MEd LINE L1 1103 1218 -4901 1113 75 0 0 chr3 192532520 192532654 -25504504 + AluY SINE Alu 1 134 -177 2331 52 41 0 chr3 192532654 192532945 -25504213 + AluY SINE Alu 1 303 -8 389 307 34 45 chr3 192534799 192534970 -25502188 + MIR SINE MIR 11 179 -83 716 277 103 0 chr3 192534970 192535154 -25502004 + MIR SINE MIR 3 205 -57 426 137 55 0 chr3 192535158 192535231 -25501927 + MER53 DNA DNA 2 78 -111 1697 175 13 13 chr3 192535336 192535639 -25501519 + AluJo SINE Alu 1 303 -9 690 75 0 0 chr3 192535650 192535743 -25501415 + (GGAA)n Simple_repeat Simple_repeat 4 96 0 1714 151 0 49 chr3 192535937 192536241 -25500917 + AluJb SINE Alu 7 295 -17 232 218 0 77 chr3 192537209 192537287 -25499871 - MIR SINE MIR -144 118 47 284 265 103 0 chr3 192738782 192738899 -25298259 - L1MC/D LINE L1 -745 5497 5369 360 346 54 25 chr3 192738941 192739181 -25297977 - L1MC/D LINE L1 -817 5329 5083 266 235 71 20 chr3 192739274 192739372 -25297786 - L1MC/D LINE L1 -1162 4984 4882 * 1373 111 17 181 chr3 192739367 192739781 -25297377 - L1P LINE L1 -2589 3557 3212 504 59 0 0 chr3 192741063 192741131 -25296027 + (GA)n Simple_repeat Simple_repeat 2 69 0 226 272 141 0 chr3 192741131 192741223 -25295935 - MIR SINE MIR -8 254 150 604 299 73 6 chr3 192741235 192741412 -25295746 - MIR SINE MIR -70 192 4 369 308 70 0 chr3 192741682 192741909 -25295249 - L1MC/D LINE L1 -2981 3165 2923 467 347 65 8 chr3 192741919 192742167 -25294991 + L1ME LINE L1 3184 3445 -2701 373 332 80 23 chr3 192742268 192742928 -25294230 + L1ME LINE L1 3595 4292 -1854 308 285 99 87 chr3 192742929 192743258 -25293900 + L1ME LINE L1 4318 4654 -1492 2062 131 0 3 chr3 192743258 192743556 -25293602 + AluSq SINE Alu 1 297 -16 308 285 99 87 chr3 192743556 192743630 -25293528 + L1ME LINE L1 4654 4726 -1420 25 31 0 0 chr3 192743647 192743679 -25293479 + AT_rich Low_complexity Low_complexity 1 32 0 1682 67 27 0 chr3 192743746 192743970 -25293188 - L1PA7 LINE L1 0 6154 5925 11576 80 6 13 chr3 192743970 192745687 -25291471 - L1PA7 LINE L1 -827 5319 3614 6406 113 32 4 chr3 192745697 192746759 -25290399 + L1P LINE L1 2466 3557 -2589 251 221 39 29 chr3 192746754 192746852 -25290306 + L1P LINE L1 4882 4984 -1162 * 338 315 27 6 chr3 192747120 192747380 -25289778 + L1ME LINE L1 5259 5524 -638 216 0 0 0 chr3 192747652 192747676 -25289482 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1554 197 3 18 chr3 192747679 192747963 -25289195 - AluJo SINE Alu -30 282 3 28 29 0 0 chr3 192748242 192748277 -25288881 + AT_rich Low_complexity Low_complexity 1 35 0 276 323 10 30 chr3 192748418 192748517 -25288641 + L2 LINE L2 3176 3272 0 449 278 155 5 chr3 192748566 192748753 -25288405 - MIR SINE MIR -15 247 33 440 156 13 0 chr3 192748982 192749059 -25288099 - MER72 LTR ERV1 -28 694 617 614 280 23 9 chr3 192750610 192750828 -25286330 + LTR16C LTR ERVL 262 482 -9 2187 115 7 0 chr3 192750871 192751175 -25285983 + AluSp SINE Alu 1 306 -7 384 267 99 43 chr3 192751298 192751459 -25285699 - MIR SINE MIR -66 196 27 282 305 69 15 chr3 192751934 192752065 -25285093 + L2 LINE L2 2926 3063 -209 2029 234 33 11 chr3 192752627 192753179 -25283979 - L1MD2 LINE L1 -20 6339 5776 253 348 27 9 chr3 192753784 192753896 -25283262 - MIR SINE MIR -99 163 50 3188 252 51 14 chr3 192754354 192755526 -25281632 + L1M4 LINE L1 3940 5155 -991 2167 126 128 8 chr3 192755655 192756037 -25281121 + MSTA LTR MaLR 1 428 0 196 296 23 0 chr3 192756182 192756226 -25280932 - L2 LINE L2 -17 3255 3211 455 315 51 17 chr3 192756635 192756813 -25280345 - MIR SINE MIR -54 208 25 657 315 50 5 chr3 192756814 192757036 -25280122 + MIR SINE MIR 1 232 -30 186 362 121 32 chr3 192757870 192758406 -25278752 - L2 LINE L2 -443 2871 2288 3580 128 85 18 chr3 192758857 192759480 -25277678 + L1PA13 LINE L1 5496 6160 -3 1141 158 5 0 chr3 192759813 192760009 -25277149 - L1PB1 LINE L1 0 6151 5955 330 26 0 0 chr3 192760776 192760815 -25276343 + (TG)n Simple_repeat Simple_repeat 1 39 0 2741 96 3 5 chr3 192761557 192761933 -25275225 + THE1C LTR MaLR 1 375 0 10129 103 30 45 chr3 192761933 192763537 -25273621 + THE1C-int LTR MaLR 1 1580 0 2574 119 14 0 chr3 192763537 192763907 -25273251 + THE1C LTR MaLR 1 375 0 201 213 0 0 chr3 192764612 192764659 -25272499 + (TCCA)n Simple_repeat Simple_repeat 3 49 0 190 326 58 23 chr3 192766518 192766604 -25270554 + L2 LINE L2 3168 3256 -16 196 135 19 19 chr3 192769297 192769349 -25267809 + (TA)n Simple_repeat Simple_repeat 1 52 0 2195 152 11 13 chr3 192769425 192769800 -25267358 + THE1C LTR MaLR 1 374 -1 700 283 58 14 chr3 192769804 192770027 -25267131 - MIR SINE MIR -2 260 28 289 336 28 9 chr3 192770460 192770567 -25266591 - MIR SINE MIR -119 143 35 243 88 0 0 chr3 192771608 192771642 -25265516 + (A)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr3 192771958 192771980 -25265178 + AT_rich Low_complexity Low_complexity 1 22 0 180 125 0 0 chr3 192771995 192772027 -25265131 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 180 0 0 0 chr3 192772606 192772626 -25264532 + (TTTTA)n Simple_repeat Simple_repeat 4 23 0 248 332 185 9 chr3 192773143 192773354 -25263804 + L2 LINE L2 2257 2504 -810 302 311 80 14 chr3 192773682 192773823 -25263335 + MIR SINE MIR 34 188 -62 332 208 104 104 chr3 192773921 192774094 -25263064 - L2 LINE L2 0 3313 3141 744 268 81 10 chr3 192774100 192774309 -25262849 - MIR SINE MIR -23 239 16 289 235 0 15 chr3 192774394 192774462 -25262696 + MIR SINE MIR 98 164 -98 26 0 0 0 chr3 192774467 192774493 -25262665 + AT_rich Low_complexity Low_complexity 1 26 0 327 419 17 13 chr3 192775007 192775241 -25261917 + L2 LINE L2 2553 2787 -527 1482 225 61 6 chr3 192775498 192775844 -25261314 + MLT1A1 LTR MaLR 1 365 0 23 0 0 0 chr3 192775869 192775892 -25261266 + AT_rich Low_complexity Low_complexity 1 23 0 398 324 28 0 chr3 192776123 192776265 -25260893 + MIR SINE MIR 117 262 0 482 277 46 8 chr3 192777027 192777157 -25260001 + L2 LINE L2 3137 3271 -1 352 316 221 5 chr3 192777195 192777385 -25259773 + MIR SINE MIR 18 248 -14 417 257 44 88 chr3 192778137 192778310 -25258848 + HAL1b LINE L1 1085 1247 -101 2255 105 0 7 chr3 192778310 192778614 -25258544 - AluY SINE Alu -9 302 1 417 257 44 88 chr3 192778614 192778666 -25258492 + HAL1b LINE L1 1247 1300 -48 1912 83 105 4 chr3 192778667 192778943 -25258215 - AluSc SINE Alu -3 306 3 21 0 0 0 chr3 192778993 192779014 -25258144 + AT_rich Low_complexity Low_complexity 1 21 0 10865 192 51 36 chr3 192779465 192781569 -25255589 + L1MA1 LINE L1 16 2086 -5479 2172 119 73 15 chr3 192781569 192781862 -25255296 + THE1B LTR MaLR 1 318 -46 864 77 0 0 chr3 192781862 192781979 -25255179 + (TA)n Simple_repeat Simple_repeat 2 118 0 2172 119 73 15 chr3 192781979 192782028 -25255130 + THE1B LTR MaLR 318 363 -1 10865 192 51 36 chr3 192782028 192782971 -25254187 + L1MA1 LINE L1 2086 3013 -4552 1582 159 4 0 chr3 192782971 192783216 -25253942 - AluSq SINE Alu -67 246 1 10865 192 51 36 chr3 192783216 192784599 -25252559 + L1MA1 LINE L1 3013 4637 -2928 2239 89 0 3 chr3 192784599 192784909 -25252249 - AluY SINE Alu 0 309 1 10865 192 51 36 chr3 192784909 192785380 -25251778 + L1MA1 LINE L1 4637 5099 -2466 6806 137 47 5 chr3 192785381 192786394 -25250764 + L1MA1 LINE L1 5352 6320 -1401 1691 187 7 3 chr3 192786394 192786688 -25250470 + AluJb SINE Alu 1 295 -17 6806 137 47 5 chr3 192786688 192787941 -25249217 + L1MA1 LINE L1 6320 7721 0 276 100 0 0 chr3 192788672 192788712 -25248446 + (CA)n Simple_repeat Simple_repeat 1 40 0 1863 160 0 79 chr3 192789241 192789634 -25247524 - MLT1A1 LTR MaLR 0 365 4 240 191 59 0 chr3 192789643 192789711 -25247447 - MLT1A1-int LTR MaLR 0 1735 1664 * 2683 234 90 77 chr3 192789710 192790921 -25246237 - MLT1A1-int LTR MaLR -140 1231 5 1636 168 125 12 chr3 192790926 192791254 -25245904 - MLT1A1 LTR MaLR 0 365 1 190 336 93 0 chr3 192791272 192791379 -25245779 + MIR3 SINE MIR 87 203 -5 195 186 0 0 chr3 192792816 192792859 -25244299 + CT-rich Low_complexity Low_complexity 3 45 0 553 244 122 0 chr3 192793414 192793578 -25243580 + MER5A DNA MER1_type 2 185 -4 2973 79 2 2 chr3 192794974 192795379 -25241779 - L1PA7 LINE L1 0 6154 5750 1813 47 25 0 chr3 192795379 192795615 -25241543 + L1PA7 LINE L1 5499 5740 -414 2788 160 19 44 chr3 192795851 192796155 -25241003 + L1MB2 LINE L1 5587 5870 -301 2146 119 0 17 chr3 192796155 192796448 -25240710 + AluSx SINE Alu 3 290 -22 2788 160 19 44 chr3 192796448 192796732 -25240426 + L1MB2 LINE L1 5870 6160 -11 203 322 60 47 chr3 192797178 192797327 -25239831 + L2 LINE L2 2611 2761 -553 330 286 101 8 chr3 192797367 192797486 -25239672 + MER5B DNA MER1_type 49 178 0 210 208 0 0 chr3 192797875 192797923 -25239235 + (TGAA)n Simple_repeat Simple_repeat 2 49 0 182 316 72 58 chr3 192799811 192799950 -25237208 + MIR3 SINE MIR 2 142 -66 2612 83 11 16 chr3 192800527 192800902 -25236256 - THE1C LTR MaLR -2 373 1 289 272 77 77 chr3 192800970 192801139 -25236019 + MIR SINE MIR 42 210 -52 2211 259 86 31 chr3 192801569 192802268 -25234890 + L2 LINE L2 2186 2922 -392 239 344 124 32 chr3 192802414 192802664 -25234494 - L2 LINE L2 -498 2816 2544 362 279 169 32 chr3 192803447 192803601 -25233557 - MER5A DNA MER1_type -13 176 2 708 308 34 0 chr3 192805580 192805788 -25231370 + MIR SINE MIR 48 262 0 1324 192 0 8 chr3 192806622 192806862 -25230296 + AluJo SINE Alu 73 310 -2 276 316 147 0 chr3 192807394 192807584 -25229574 - MIR SINE MIR -16 246 29 295 263 36 15 chr3 192807630 192807767 -25229391 + (TA)n Simple_repeat Simple_repeat 2 141 0 2952 36 0 3 chr3 192808233 192808591 -25228567 + L1PA4 LINE L1 5797 6153 -2 2109 81 0 71 chr3 192808597 192808905 -25228253 + AluSq SINE Alu 13 298 -15 2493 77 3 0 chr3 192809486 192809796 -25227362 + AluSx SINE Alu 1 311 -1 330 209 66 44 chr3 192810100 192810191 -25226967 - L3 LINE CR1 -17 1560 1468 485 202 77 0 chr3 192811760 192811864 -25225294 - MIR SINE MIR 0 262 151 207 0 0 0 chr3 192811887 192811910 -25225248 + (GGGA)n Simple_repeat Simple_repeat 3 25 0 470 238 28 35 chr3 192812547 192812690 -25224468 - MIR SINE MIR -46 216 75 273 317 20 20 chr3 192813373 192813474 -25223684 - MIR SINE MIR -116 146 46 29292 112 11 60 chr3 192813807 192820268 -25216890 - L1PA7 LINE L1 -1 6153 13 303 316 26 66 chr3 192821062 192821234 -25215924 + L2 LINE L2 3045 3207 -106 2244 122 0 0 chr3 192821234 192821537 -25215621 - AluSx SINE Alu -9 303 1 303 316 26 66 chr3 192821537 192821592 -25215566 + L2 LINE L2 3207 3263 -50 1784 168 7 30 chr3 192822553 192822857 -25214301 - AluJo SINE Alu -7 305 9 2036 129 24 0 chr3 192823014 192823301 -25213857 + AluSx SINE Alu 1 294 -18 3837 62 2 0 chr3 192824312 192824797 -25212361 + L1PA8 LINE L1 5677 6162 -10 351 0 0 0 chr3 192824836 192824875 -25212283 + (TA)n Simple_repeat Simple_repeat 2 40 0 243 139 0 0 chr3 192824994 192825037 -25212121 + MER65A LTR ERV1 1 43 -402 186 318 38 38 chr3 192825313 192825445 -25211713 + MIR SINE MIR 77 208 -54 225 0 0 0 chr3 192825782 192825807 -25211351 + (A)n Simple_repeat Simple_repeat 1 25 0 581 269 120 16 chr3 192827132 192827374 -25209784 + MLT1K LTR MaLR 322 588 0 1300 6 30 0 chr3 192827410 192827579 -25209579 + (TCTA)n Simple_repeat Simple_repeat 3 176 0 461 346 60 8 chr3 192828314 192828548 -25208610 - MIR SINE MIR 0 262 17 22 0 0 0 chr3 192829662 192829684 -25207474 + AT_rich Low_complexity Low_complexity 1 22 0 213 196 0 0 chr3 192829867 192829913 -25207245 + (TG)n Simple_repeat Simple_repeat 2 47 0 188 261 22 0 chr3 192830206 192830252 -25206906 - MIR3 SINE MIR -18 190 144 21 110 0 0 chr3 192831218 192831309 -25205849 + AT_rich Low_complexity Low_complexity 1 91 0 445 310 60 7 chr3 192831342 192831626 -25205532 - L1ME LINE L1 -301 5820 5522 364 291 70 25 chr3 192831627 192831785 -25205373 + MIR SINE MIR 92 256 -6 2158 102 7 7 chr3 192832031 192832325 -25204833 - AluSg SINE Alu -16 294 1 304 222 16 0 chr3 192833013 192833076 -25204082 - MIR SINE MIR -21 241 178 440 359 23 14 chr3 192833093 192833313 -25203845 - L3 LINE CR1 -251 1326 1105 180 262 79 103 chr3 192833440 192833566 -25203592 - L3 LINE CR1 -405 1172 1050 507 301 23 23 chr3 192834723 192834899 -25202259 - MIR3 SINE MIR -2 206 31 494 287 96 20 chr3 192835387 192835625 -25201533 + MIR SINE MIR 9 262 0 39 38 0 0 chr3 192836206 192836259 -25200899 + AT_rich Low_complexity Low_complexity 1 53 0 314 198 52 9 chr3 192836283 192836399 -25200759 + (TA)n Simple_repeat Simple_repeat 1 121 0 194 183 133 33 chr3 192837621 192837681 -25199477 - MIR3 SINE MIR -22 186 121 187 310 0 35 chr3 192837844 192837902 -25199256 - MIR3 SINE MIR -49 159 104 210 329 37 0 chr3 192838424 192838506 -25198652 + MIR SINE MIR 59 143 -119 216 257 286 21 chr3 192839081 192839221 -25197937 + MER5B DNA MER1_type 2 178 0 2210 109 7 7 chr3 192839618 192839922 -25197236 + AluSq SINE Alu 1 304 -9 592 260 73 6 chr3 192840804 192840981 -25196177 - MIR SINE MIR -57 205 17 189 263 0 0 chr3 192841785 192841823 -25195335 - MER5A DNA MER1_type -115 74 37 684 239 66 44 chr3 192842096 192842322 -25194836 + MIR SINE MIR 30 260 -2 1791 142 13 26 chr3 192842483 192842785 -25194373 + AluSx SINE Alu 1 298 -14 470 299 63 30 chr3 192844446 192844643 -25192515 + MIR SINE MIR 30 243 -19 277 270 102 36 chr3 192844899 192845036 -25192122 + MIR SINE MIR 51 196 -66 591 246 56 60 chr3 192845430 192845662 -25191496 - MIR SINE MIR -12 250 20 2525 54 0 25 chr3 192845840 192846154 -25191004 - AluY SINE Alu -5 306 1 2109 125 0 49 chr3 192846696 192847023 -25190135 + AluSx SINE Alu 1 311 -1 222 370 72 12 chr3 192847788 192848037 -25189121 - L2 LINE L2 -401 2913 2650 268 345 76 17 chr3 192848065 192848184 -25188974 - MER5A DNA MER1_type -57 132 7 294 350 139 24 chr3 192848189 192848643 -25188515 - L2 LINE L2 -661 2653 2148 261 180 0 0 chr3 192848737 192848787 -25188371 + (CATA)n Simple_repeat Simple_repeat 2 51 0 844 325 79 27 chr3 192848965 192849098 -25188060 + L2 LINE L2 2384 2509 -805 1679 151 113 46 chr3 192849098 192849469 -25187689 - MSTD LTR MaLR 0 396 1 844 325 79 27 chr3 192849469 192849818 -25187340 + L2 LINE L2 2509 2891 -423 435 311 49 49 chr3 192852333 192852516 -25184642 - L2 LINE L2 0 3272 3090 256 328 57 8 chr3 192853435 192853557 -25183601 - MIR SINE MIR -22 240 113 364 272 44 18 chr3 192853903 192854017 -25183141 + MIR SINE MIR 75 191 -71 412 312 52 6 chr3 192854030 192854203 -25182955 - MIR SINE MIR -4 258 78 1580 179 111 54 chr3 192854217 192854659 -25182499 - LTR10A LTR ERV1 -61 548 82 21 57 0 0 chr3 192854852 192854887 -25182271 + AT_rich Low_complexity Low_complexity 1 35 0 2383 287 85 20 chr3 192855455 192856630 -25180528 - L2 LINE L2 -1 3312 2068 311 96 19 0 chr3 192856656 192856708 -25180450 + (CA)n Simple_repeat Simple_repeat 1 53 0 380 244 103 6 chr3 192856974 192857130 -25180028 - L1ME4a LINE L1 -6 6115 5945 22 0 0 0 chr3 192858517 192858539 -25178619 + AT_rich Low_complexity Low_complexity 1 22 0 630 187 19 0 chr3 192861164 192861319 -25175839 + CT-rich Low_complexity Low_complexity 1 158 0 21 0 0 0 chr3 192861575 192861596 -25175562 + AT_rich Low_complexity Low_complexity 1 21 0 2375 73 0 3 chr3 192862012 192862333 -25174825 + AluSp SINE Alu 1 320 0 450 128 39 20 chr3 192862432 192862534 -25174624 + GA-rich Low_complexity Low_complexity 5 108 0 200 306 16 0 chr3 192862826 192862888 -25174270 + GA-rich Low_complexity Low_complexity 1 63 0 26 0 0 0 chr3 192864564 192864590 -25172568 + AT_rich Low_complexity Low_complexity 1 26 0 6237 127 25 45 chr3 192864600 192865757 -25171401 + L1MC1 LINE L1 5198 6332 -1 270 0 0 0 chr3 192865796 192865826 -25171332 + (TA)n Simple_repeat Simple_repeat 2 31 0 29 47 0 0 chr3 192866235 192866278 -25170880 + AT_rich Low_complexity Low_complexity 1 43 0 266 244 0 99 chr3 192867263 192867394 -25169764 - L1ME4a LINE L1 -6 6115 5998 583 301 50 25 chr3 192867456 192867778 -25169380 - L1ME4a LINE L1 -267 5854 5525 479 295 35 29 chr3 192869306 192869479 -25167679 - MER91B DNA MER1_type -16 174 1 297 0 0 0 chr3 192870365 192870398 -25166760 + (TG)n Simple_repeat Simple_repeat 2 34 0 347 325 74 33 chr3 192871274 192871517 -25165641 + L1MEc LINE L1 2096 2310 -3905 229 288 96 20 chr3 192871522 192871720 -25165438 + L1MEc LINE L1 2321 2533 -3682 180 152 0 0 chr3 192871953 192871986 -25165172 + (TAA)n Simple_repeat Simple_repeat 2 34 0 309 258 50 57 chr3 192872254 192872413 -25164745 + L1MEc LINE L1 3084 3241 -2974 340 247 111 12 chr3 192872580 192872927 -25164231 + L1MEc LINE L1 3563 4021 -2194 274 325 0 0 chr3 192873416 192873493 -25163665 + L2 LINE L2 3193 3269 -3 259 344 134 61 chr3 192874431 192874678 -25162480 + L2 LINE L2 2988 3252 -20 2273 100 7 0 chr3 192874802 192875103 -25162055 - AluSq SINE Alu -10 303 1 264 230 95 95 chr3 192875224 192875350 -25161808 + MIR SINE MIR 84 209 -53 410 329 29 0 chr3 192876831 192876968 -25160190 + MIR SINE MIR 42 182 -80 410 372 65 47 chr3 192878085 192878426 -25158732 + L2 LINE L2 2926 3272 0 369 0 0 0 chr3 192879208 192879249 -25157909 + (CA)n Simple_repeat Simple_repeat 2 42 0 662 305 69 22 chr3 192879662 192879908 -25157250 + MIR SINE MIR 2 253 -9 1388 189 7 0 chr3 192880352 192880638 -25156520 - L1PA16 LINE L1 -904 5242 4955 3727 119 12 15 chr3 192880638 192880849 -25156309 + L1PA16 LINE L1 5254 5464 -702 1811 138 28 28 chr3 192880849 192881160 -25155998 - AluJb SINE Alu 0 311 1 3727 119 12 15 chr3 192881160 192881535 -25155623 + L1PA16 LINE L1 5464 5839 -327 884 112 0 0 chr3 192881535 192881651 -25155507 + AluSq/x SINE Alu 1 116 -196 1813 140 4 0 chr3 192881663 192881942 -25155216 + L1PA16 LINE L1 5870 6149 -17 21 36 0 0 chr3 192881973 192882001 -25155157 + AT_rich Low_complexity Low_complexity 1 28 0 292 335 170 24 chr3 192882854 192883066 -25154092 - MIR SINE MIR 0 262 20 2568 128 33 19 chr3 192883097 192883519 -25153639 - MSTA LTR MaLR 0 428 1 1116 60 20 7 chr3 192883660 192883810 -25153348 + L1M1 LINE L1 5554 5705 -600 333 340 51 46 chr3 192883840 192884037 -25153121 + MIR3 SINE MIR 4 201 -7 223 309 64 11 chr3 192885055 192885149 -25152009 - MIR3 SINE MIR -7 201 103 2399 171 32 26 chr3 192886109 192886177 -25150981 - MLT1C LTR MaLR 0 467 401 1946 136 3 31 chr3 192886177 192886494 -25150664 + AluSp SINE Alu 1 308 -5 2399 171 32 26 chr3 192886494 192886696 -25150462 - MLT1C LTR MaLR -66 401 190 249 33 0 0 chr3 192886696 192886726 -25150432 + (TG)n Simple_repeat Simple_repeat 2 31 0 2399 171 32 26 chr3 192886726 192886915 -25150243 - MLT1C LTR MaLR -277 190 4 700 316 61 14 chr3 192886934 192887279 -25149879 - LTR16A LTR ERVL -89 361 1 1187 168 22 44 chr3 192887704 192887930 -25149228 + MER58A DNA MER1_type 1 221 -3 202 297 119 69 chr3 192888085 192888186 -25148972 + L2 LINE L2 3134 3239 -33 240 224 0 0 chr3 192888289 192888338 -25148820 + MIR SINE MIR 83 131 -77 400 337 25 15 chr3 192888567 192888769 -25148389 - MER20B DNA MER1_type -579 204 1 1941 160 6 6 chr3 192889471 192889783 -25147375 - AluJb SINE Alu 0 312 1 195 325 24 12 chr3 192890911 192890994 -25146164 + MIR3 SINE MIR 71 154 -54 221 389 43 22 chr3 192892239 192892378 -25144780 + MIR SINE MIR 10 151 -111 1374 171 30 85 chr3 192892528 192892594 -25144564 - MER2 DNA MER2_type 0 344 276 1742 141 16 69 chr3 192892594 192892899 -25144259 + AluJb SINE Alu 1 289 -23 1374 171 30 85 chr3 192892899 192893195 -25143963 - MER2 DNA MER2_type -68 276 2 2107 101 7 0 chr3 192893683 192893961 -25143197 + AluSg SINE Alu 17 296 -14 207 372 93 23 chr3 192894030 192894116 -25143042 - L2 LINE L2 -47 3225 3134 2175 71 0 49 chr3 192895216 192895524 -25141634 - AluY SINE Alu -18 293 1 26 0 0 0 chr3 192896027 192896053 -25141105 + AT_rich Low_complexity Low_complexity 1 26 0 630 261 61 21 chr3 192896394 192896582 -25140576 + MIR3 SINE MIR 41 224 -11 286 314 102 64 chr3 192896879 192897162 -25139996 + L2 LINE L2 2978 3271 -1 202 283 0 17 chr3 192898282 192898342 -25138816 - L2 LINE L2 -81 3191 3133 225 267 0 0 chr3 192898419 192898464 -25138694 + (TG)n Simple_repeat Simple_repeat 2 46 0 2162 139 128 8 chr3 192898513 192898895 -25138263 - MSTA LTR MaLR 0 428 1 8503 185 24 21 chr3 192898895 192900540 -25136618 - MSTA-int LTR MaLR -1 1650 1 2092 135 140 8 chr3 192900540 192900918 -25136240 - MSTA LTR MaLR 0 428 1 207 0 0 0 chr3 192900955 192900978 -25136180 + (A)n Simple_repeat Simple_repeat 1 23 0 301 344 150 6 chr3 192903801 192903961 -25133197 + MIR SINE MIR 80 262 0 693 305 26 9 chr3 192904018 192904244 -25132914 + MIR SINE MIR 20 249 -13 319 207 281 0 chr3 192904433 192904515 -25132643 + MER63 DNA MER1_type 682 786 -276 380 256 113 33 chr3 192904657 192904829 -25132329 + MIR3 SINE MIR 14 208 0 344 221 52 13 chr3 192905778 192905855 -25131303 - L2 LINE L2 0 3313 3234 261 185 148 56 chr3 192905868 192905976 -25131182 + MLT1C LTR MaLR 1 118 -349 928 238 67 5 chr3 192906041 192906264 -25130894 + MLT1C LTR MaLR 228 464 -3 184 348 78 17 chr3 192906727 192906842 -25130316 - L2 LINE L2 -569 2745 2624 2089 161 8 25 chr3 192906871 192907268 -25129890 + MLT1B LTR MaLR 1 390 0 46 45 0 0 chr3 192908628 192908695 -25128463 + AT_rich Low_complexity Low_complexity 1 67 0 339 332 126 65 chr3 192908716 192909114 -25128044 - L2 LINE L2 -1 3271 2850 1281 198 64 85 chr3 192910623 192911012 -25126146 - MLT1B LTR MaLR 0 390 10 1853 112 8 4 chr3 192914436 192914696 -25122462 - AluSg SINE Alu -16 294 34 216 311 94 19 chr3 192916787 192916893 -25120265 + L2 LINE L2 2568 2681 -633 2007 234 30 57 chr3 192916901 192917607 -25119551 + L1ME3A LINE L1 5441 6127 -43 403 369 66 14 chr3 192917664 192917996 -25119162 + L2 LINE L2 2717 3064 -208 218 299 234 16 chr3 192919773 192919957 -25117201 + MIR SINE MIR 21 244 -18 215 314 78 20 chr3 192920441 192920543 -25116615 + MIR SINE MIR 8 115 -147 356 276 145 31 chr3 192921744 192921974 -25115184 + MIR SINE MIR 3 255 -7 511 326 67 13 chr3 192922341 192922565 -25114593 + MIR SINE MIR 6 241 -21 602 274 118 24 chr3 192923423 192923635 -25113523 - MIR SINE MIR 0 262 31 1226 138 36 13 chr3 192923643 192923867 -25113291 - MER58B DNA MER1_type -8 333 105 311 362 35 20 chr3 192925390 192925592 -25111566 + MIR SINE MIR 37 240 -22 290 188 0 0 chr3 192925766 192925814 -25111344 - AluJ/FRAM SINE Alu -36 266 219 1131 78 6 0 chr3 192925942 192926108 -25111050 - L1PA8 LINE L1 -1062 5084 4918 6344 86 16 1 chr3 192926108 192927179 -25109979 + L1PA8 LINE L1 5075 6158 -14 25 0 0 0 chr3 192927179 192927204 -25109954 + AT_rich Low_complexity Low_complexity 1 25 0 1842 104 12 0 chr3 192927211 192927451 -25109707 + AluSc SINE Alu 50 292 -17 1260 164 52 0 chr3 192927479 192927729 -25109429 - L1MB3 LINE L1 -2 6181 5919 350 251 117 47 chr3 192928362 192928533 -25108625 - MIR SINE MIR -56 206 20 21 0 0 0 chr3 192929230 192929251 -25107907 + AT_rich Low_complexity Low_complexity 1 21 0 185 81 0 27 chr3 192929309 192929346 -25107812 + (TA)n Simple_repeat Simple_repeat 2 37 0 288 130 5 83 chr3 192929414 192929606 -25107552 + (TA)n Simple_repeat Simple_repeat 2 178 0 470 291 27 14 chr3 192930904 192931052 -25106106 - MIR SINE MIR -10 252 103 22 35 0 0 chr3 192932249 192932278 -25104880 + AT_rich Low_complexity Low_complexity 1 29 0 2665 85 8 0 chr3 192933368 192933720 -25103438 - THE1A LTR MaLR 0 355 1 11788 83 13 3 chr3 192933720 192935285 -25101873 - THE1A-int LTR MaLR 0 1580 1 2568 101 3 3 chr3 192935285 192935640 -25101518 - THE1A LTR MaLR 0 355 1 265 304 120 32 chr3 192935806 192935964 -25101194 - MIR SINE MIR -83 179 8 4239 125 7 0 chr3 192935984 192936592 -25100566 + LTR9 LTR ERV1 1 612 0 392 305 16 112 chr3 192936713 192936900 -25100258 - MIR3 SINE MIR -29 179 11 755 289 124 52 chr3 192937099 192937922 -25099236 + HAL1 LINE L1 62 943 -1564 577 181 79 16 chr3 192938138 192938265 -25098893 + FAM SINE Alu 1 42 -7 510 264 87 101 chr3 192938366 192938801 -25098357 + L1ME4a LINE L1 5672 6100 -21 197 259 19 0 chr3 192938874 192938928 -25098230 + L2 LINE L2 3257 3311 -2 27 49 0 0 chr3 192940081 192940122 -25097036 + AT_rich Low_complexity Low_complexity 1 41 0 1865 150 61 9 chr3 192940196 192940522 -25096636 + MER61A LTR ERV1 1 343 0 188 313 144 56 chr3 192940952 192941112 -25096046 + MIR3 SINE MIR 2 175 -33 482 220 45 15 chr3 192942206 192942354 -25094804 + L1ME1 LINE L1 5325 5461 -709 1728 212 180 45 chr3 192942380 192943041 -25094117 + L1ME1 LINE L1 5416 6165 -1 232 244 256 0 chr3 192943048 192943130 -25094028 - L2 LINE L2 -21 3292 3190 249 378 53 13 chr3 192943150 192943301 -25093857 + L2 LINE L2 2565 2721 -593 777 258 217 25 chr3 192943317 192943759 -25093399 + LTR67 LTR ERVL 2 528 -29 284 356 89 25 chr3 192943804 192944040 -25093118 + L2 LINE L2 2738 2985 -287 282 258 34 11 chr3 192944238 192944327 -25092831 - L2 LINE L2 -2 3311 3221 180 0 0 0 chr3 192946104 192946124 -25091034 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 672 257 101 37 chr3 192946491 192946610 -25090548 + MIR SINE MIR 28 138 -124 2078 147 19 30 chr3 192946610 192946978 -25090180 + THE1B LTR MaLR 1 364 0 672 257 101 37 chr3 192946978 192947076 -25090082 + MIR SINE MIR 138 259 -3 407 306 56 0 chr3 192947646 192947754 -25089404 + L2 LINE L2 3158 3271 -1 223 231 108 15 chr3 192948960 192949025 -25088133 + MIR3 SINE MIR 124 194 -14 587 271 140 38 chr3 192950968 192951140 -25086018 - MIR SINE MIR -2 260 56 542 214 9 9 chr3 192951140 192951252 -25085906 + MER81 DNA DNA 3 114 0 587 271 140 38 chr3 192951252 192951315 -25085843 - MIR SINE MIR -206 56 1 369 294 132 15 chr3 192951940 192952084 -25085074 + MIR SINE MIR 2 178 -84 1965 171 17 8 chr3 192952084 192952446 -25084712 - MLT1A1 LTR MaLR 0 365 1 369 294 132 15 chr3 192952446 192952505 -25084653 + MIR SINE MIR 178 229 -33 25 31 0 0 chr3 192952825 192952857 -25084301 + AT_rich Low_complexity Low_complexity 1 32 0 581 168 32 0 chr3 192953045 192953140 -25084018 - MER45A DNA AcHobo -11 167 70 279 380 34 10 chr3 192953972 192954180 -25082978 + L2 LINE L2 2824 3036 -236 209 261 62 15 chr3 192954406 192954471 -25082687 + MIR3 SINE MIR 134 201 -7 2441 75 3 0 chr3 192955020 192955326 -25081832 - AluY SINE Alu -4 307 1 504 203 15 45 chr3 192955438 192955571 -25081587 - LTR33 LTR ERVL -293 228 100 979 245 116 46 chr3 192955736 192956107 -25081051 - LTR40a LTR ERVL -118 401 5 297 151 0 0 chr3 192957345 192957398 -25079760 + (CA)n Simple_repeat Simple_repeat 1 53 0 224 214 0 0 chr3 192957517 192957559 -25079599 + L2 LINE L2 3266 3307 -6 2077 113 0 0 chr3 192957655 192957930 -25079228 - AluSg SINE Alu -35 275 1 22 35 0 0 chr3 192958359 192958388 -25078770 + AT_rich Low_complexity Low_complexity 1 29 0 195 219 0 0 chr3 192958470 192958511 -25078647 - MIR3 SINE MIR -3 205 165 694 157 84 22 chr3 192958738 192958916 -25078242 - MER53 DNA DNA 0 189 1 404 336 81 9 chr3 192958923 192959146 -25078012 + MIR SINE MIR 9 247 -15 818 208 62 0 chr3 192959308 192959486 -25077672 - MER5A DNA MER1_type 0 189 1 181 281 146 24 chr3 192959884 192959966 -25077192 + MIR3 SINE MIR 110 201 -7 536 196 0 0 chr3 192960083 192960175 -25076983 - MLT1B LTR MaLR -298 92 1 372 329 95 22 chr3 192960411 192960633 -25076525 + MIR SINE MIR 20 257 -5 264 59 0 0 chr3 192961448 192961482 -25075676 + (TTATA)n Simple_repeat Simple_repeat 3 36 0 410 177 0 0 chr3 192962398 192962477 -25074681 - Charlie5 DNA MER1_type 0 2623 2545 456 325 53 7 chr3 192962624 192962775 -25074383 + L2 LINE L2 2896 3053 -219 2250 135 34 57 chr3 192963503 192963739 -25073419 - MSTB LTR MaLR 0 426 203 2265 112 0 0 chr3 192963739 192964043 -25073115 - AluSx SINE Alu -8 304 1 2250 135 34 57 chr3 192964043 192964242 -25072916 - MSTB LTR MaLR -223 203 1 30 0 0 0 chr3 192964550 192964580 -25072578 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr3 192965117 192965139 -25072019 + AT_rich Low_complexity Low_complexity 1 22 0 274 337 89 45 chr3 192965622 192965824 -25071334 + L2 LINE L2 2932 3142 -130 182 191 21 21 chr3 192966001 192966048 -25071110 - L2 LINE L2 0 3313 3267 660 248 105 0 chr3 192966508 192966661 -25070497 - AluJo SINE Alu -143 169 1 216 301 96 0 chr3 192966673 192966756 -25070402 - L2 LINE L2 -33 3239 3149 562 156 0 0 chr3 192967150 192967240 -25069918 + 5S rRNA rRNA 1 90 -31 426 215 76 47 chr3 192967890 192968062 -25069096 + MER104 DNA MER2_type 4 180 0 280 309 114 20 chr3 192968063 192968212 -25068946 + MIR SINE MIR 76 238 -24 1348 302 73 37 chr3 192968470 192969222 -25067936 + L1MA4 LINE L1 902 1680 -5529 * 2496 168 25 10 chr3 192969220 192969702 -25067456 + L1MA4 LINE L1 2556 3044 -4165 * 7231 162 41 58 chr3 192969700 192970279 -25066879 + L1MA4 LINE L1 4852 5439 -1895 684 94 0 0 chr3 192970279 192970375 -25066783 + AluSc SINE Alu 198 293 -16 7231 162 41 58 chr3 192970375 192971494 -25065664 + L1MA4 LINE L1 5439 6591 -743 271 109 0 156 chr3 192971492 192971556 -25065602 - L1P LINE L1 -1272 4874 4821 * 635 152 9 0 chr3 192971644 192971749 -25065409 - L1P LINE L1 -1356 4790 4685 3401 110 0 4 chr3 192971750 192972222 -25064936 + MER9 LTR ERVK 42 511 0 1419 157 18 14 chr3 192972225 192972511 -25064647 + L1MA4 LINE L1 7070 7356 -6 199 289 13 40 chr3 192973258 192973334 -25063824 - MIR SINE MIR -70 192 119 5254 170 26 5 chr3 192977769 192979115 -25058043 + L1MC1 LINE L1 4809 6173 -160 726 306 87 48 chr3 192979122 192980145 -25057013 - L1MC4 LINE L1 -986 6907 5753 331 238 65 48 chr3 192980260 192980428 -25056730 - L1MC4 LINE L1 -2309 5499 5329 1605 194 13 3 chr3 192980428 192980738 -25056420 - AluSq SINE Alu 0 313 1 2455 194 60 9 chr3 192980765 192981301 -25055857 - L1MD3 LINE L1 -9 7986 7424 577 278 21 0 chr3 192981301 192981445 -25055713 - MLT1F1 LTR MaLR -420 147 1 1100 245 35 14 chr3 192981465 192981812 -25055346 - L1MD3 LINE L1 -738 7257 6904 226 0 0 56 chr3 192981962 192981998 -25055160 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 244 189 170 0 chr3 192982030 192982083 -25055075 - AluJ/FRAM SINE Alu -24 278 217 2198 109 0 3 chr3 192982183 192982477 -25054681 - AluY SINE Alu -18 293 1 2606 74 6 3 chr3 192982503 192982853 -25054305 - L1PA7 LINE L1 -13 6141 5791 180 0 0 0 chr3 192983520 192983540 -25053618 + (T)n Simple_repeat Simple_repeat 1 20 0 558 219 12 44 chr3 192983712 192983872 -25053286 - L1MD3 LINE L1 -299 7696 7542 473 255 55 28 chr3 192983891 192984036 -25053122 + MIR SINE MIR 106 254 -8 210 222 0 0 chr3 192984048 192984102 -25053056 + (CAT)n Simple_repeat Simple_repeat 1 54 0 191 316 48 65 chr3 192984408 192984576 -25052582 + L2 LINE L2 2887 3051 -221 210 250 0 0 chr3 192984638 192984686 -25052472 - L2 LINE L2 0 3313 3266 191 316 48 65 chr3 192985497 192985665 -25051493 + L2 LINE L2 2887 3051 -221 210 250 0 0 chr3 192985727 192985775 -25051383 - L2 LINE L2 0 3313 3266 231 241 76 13 chr3 192986239 192986318 -25050840 + MARNA DNA Mariner 269 352 -234 427 322 122 19 chr3 192986684 192986889 -25050269 - MIR SINE MIR -29 233 8 628 234 34 17 chr3 192987269 192987444 -25049714 + MARNA DNA Mariner 269 446 -140 264 231 0 15 chr3 192987388 192987453 -25049705 - MARNA DNA Mariner -393 193 130 * 523 364 89 16 chr3 192987780 192988231 -25048927 - L3 LINE CR1 -11 1566 1083 236 252 39 97 chr3 192988359 192988462 -25048696 + L2 LINE L2 3133 3229 -43 261 293 93 33 chr3 192988844 192988994 -25048164 + L3 LINE CR1 623 781 -796 220 179 224 60 chr3 192989272 192989339 -25047819 + L3 LINE CR1 962 1039 -538 213 350 22 56 chr3 192989488 192989668 -25047490 - MER5B DNA MER1_type -1 177 4 2454 63 0 0 chr3 192991552 192991854 -25045304 + AluY SINE Alu 1 302 -9 341 294 81 22 chr3 192991931 192992067 -25045091 + MIR SINE MIR 28 171 -91 185 128 21 0 chr3 192992379 192992426 -25044732 + T-rich Low_complexity Low_complexity 2 49 0 237 319 0 0 chr3 192993790 192993859 -25043299 - L2 LINE L2 -2 3311 3243 977 212 57 5 chr3 192993928 192994140 -25043018 - MER58 DNA MER1_type -118 223 1 300 294 268 18 chr3 192994297 192994525 -25042633 - L2 LINE L2 -348 2966 2682 456 256 11 0 chr3 192994537 192994627 -25042531 - MER58A DNA MER1_type -15 92 2 1203 201 59 7 chr3 192995126 192995414 -25041744 + L1MA4 LINE L1 5995 6297 -3 27 29 0 0 chr3 192995745 192995779 -25041379 + AT_rich Low_complexity Low_complexity 1 34 0 21 71 0 0 chr3 192996074 192996116 -25041042 + AT_rich Low_complexity Low_complexity 1 42 0 3299 276 93 48 chr3 192996277 192997006 -25040152 + L1ME3A LINE L1 25 720 -6158 195 42 0 0 chr3 192997006 192997030 -25040128 + (GGAGAA)n Simple_repeat Simple_repeat 4 27 0 3299 276 93 48 chr3 192997030 192998187 -25038971 + L1ME3A LINE L1 720 1990 -4888 1608 197 3 66 chr3 192998250 192998499 -25038659 - MLT1A1 LTR MaLR 0 365 145 2405 158 16 12 chr3 192998499 192998922 -25038236 - MSTB LTR MaLR -1 425 1 1608 197 3 66 chr3 192998922 192999038 -25038120 - MLT1A1 LTR MaLR -220 145 23 198 0 0 0 chr3 192999178 192999200 -25037958 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1650 231 88 86 chr3 192999250 193000196 -25036962 + L1ME3A LINE L1 3102 4049 -2892 1363 252 93 15 chr3 193000241 193000714 -25036444 + L1ME3A LINE L1 4133 4642 -2299 * 2155 266 82 39 chr3 193000707 193002223 -25034935 + L1ME3A LINE L1 5362 6953 -12 1151 250 18 3 chr3 193002360 193002644 -25034514 + L1MEc LINE L1 39 326 -6070 595 251 76 15 chr3 193002655 193002918 -25034240 + L1MEc LINE L1 1007 1285 -5111 271 290 0 14 chr3 193002918 193002987 -25034171 + MER5B DNA MER1_type 54 121 -57 824 250 54 24 chr3 193003882 193004797 -25032361 - L1ME3A LINE L1 -5 6165 5178 1752 231 52 54 chr3 193005010 193005495 -25031663 - MLT2B2 LTR ERVL 0 515 32 456 289 152 30 chr3 193006906 193007405 -25029753 - L1ME4a LINE L1 -175 5946 5387 324 308 41 51 chr3 193007411 193007606 -25029552 - L1ME4a LINE L1 -765 5381 5189 3704 113 32 14 chr3 193007762 193008354 -25028804 - L1MA4 LINE L1 -6 6294 5692 228 247 93 73 chr3 193009028 193009178 -25027980 - MIR SINE MIR -84 178 26 318 309 88 15 chr3 193009933 193010069 -25027089 - L2 LINE L2 -3 3310 3165 225 0 0 0 chr3 193010145 193010170 -25026988 + (TA)n Simple_repeat Simple_repeat 2 26 0 849 261 28 23 chr3 193012325 193012543 -25024615 + MIR SINE MIR 21 239 -23 2022 85 3 11 chr3 193012563 193012909 -25024249 + AluSc SINE Alu 1 344 0 268 325 32 32 chr3 193015619 193015742 -25021416 + MIR SINE MIR 30 152 -110 22 56 0 0 chr3 193015848 193015884 -25021274 + AT_rich Low_complexity Low_complexity 1 36 0 221 300 17 0 chr3 193016775 193016835 -25020323 - L2 LINE L2 -4 3268 3208 21 0 0 0 chr3 193017026 193017047 -25020111 + AT_rich Low_complexity Low_complexity 1 21 0 255 206 63 0 chr3 193017047 193017110 -25020048 - L1MA8 LINE L1 0 6291 6225 334 314 117 60 chr3 193017412 193017848 -25019310 - L1 LINE L1 -796 5350 4890 403 330 196 9 chr3 193018814 193019044 -25018114 - L3 LINE CR1 -60 1517 1245 230 326 0 33 chr3 193019207 193019299 -25017859 + L2 LINE L2 3225 3313 0 2499 29 7 19 chr3 193019662 193019969 -25017189 - AluY SINE Alu -8 303 1 1613 124 22 0 chr3 193021032 193021299 -25015859 + L1MA2 LINE L1 6032 6304 0 319 325 12 31 chr3 193021331 193021491 -25015667 + MIR SINE MIR 47 203 -59 298 323 161 0 chr3 193022100 193022224 -25014934 + MIR3 SINE MIR 40 183 -25 2062 162 60 31 chr3 193024365 193024779 -25012379 - MSTB LTR MaLR 0 426 1 411 327 117 18 chr3 193024965 193025188 -25011970 - MIR SINE MIR -7 255 11 189 74 0 0 chr3 193025210 193025237 -25011921 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 650 289 91 12 chr3 193025734 193025976 -25011182 + MIR SINE MIR 2 262 0 248 336 154 9 chr3 193025989 193026319 -25010839 - L2 LINE L2 -1052 2262 1885 209 184 0 0 chr3 193026417 193026455 -25010703 + (TTG)n Simple_repeat Simple_repeat 2 39 0 249 300 0 43 chr3 193026711 193026781 -25010377 - L2 LINE L2 -532 2782 2716 585 317 105 41 chr3 193026912 193027275 -25009883 + L2 LINE L2 2927 3312 -1 798 251 0 22 chr3 193027587 193027818 -25009340 + L1 LINE L1 3403 3628 -2518 4402 204 16 0 chr3 193027920 193028376 -25008782 + L1 LINE L1 3942 4389 -1757 189 0 0 0 chr3 193028376 193028397 -25008761 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 4402 204 16 0 chr3 193028397 193028865 -25008293 + L1 LINE L1 4389 4881 -1265 1754 168 10 92 chr3 193028866 193029259 -25007899 + MSTD LTR MaLR 25 385 -11 705 191 24 0 chr3 193030323 193030491 -25006667 + GA-rich Low_complexity Low_complexity 2 173 0 29506 119 8 24 chr3 193031492 193037965 -24999193 - L1PA7 LINE L1 -4 6465 8 2418 63 13 0 chr3 193038942 193039241 -24997917 - AluSp SINE Alu -8 305 3 1613 146 12 43 chr3 193039269 193039592 -24997566 - L1MA7 LINE L1 0 6291 5979 6445 205 63 7 chr3 193039598 193042522 -24994636 - L1MA7 LINE L1 -746 5400 2210 307 292 71 18 chr3 193042680 193042793 -24994365 + L2 LINE L2 3154 3272 0 216 0 0 0 chr3 193043669 193043693 -24993465 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 227 413 42 31 chr3 193044017 193044562 -24992596 + L2 LINE L2 1837 2387 -927 24 32 0 0 chr3 193045430 193045461 -24991697 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr3 193046656 193046678 -24990480 + AT_rich Low_complexity Low_complexity 1 22 0 313 279 80 42 chr3 193049230 193049542 -24987616 - L1M4 LINE L1 -3522 2624 2301 2776 190 2 32 chr3 193049557 193049734 -24987424 - MLT2B2 LTR ERVL 0 515 334 5499 70 110 0 chr3 193049734 193050478 -24986680 + LTR12 LTR ERV1 1 826 0 2776 190 2 32 chr3 193050478 193050831 -24986327 - MLT2B2 LTR ERVL -181 334 1 33 43 0 0 chr3 193050918 193050965 -24986193 + AT_rich Low_complexity Low_complexity 1 47 0 1048 291 115 9 chr3 193051027 193051470 -24985688 - Charlie7 DNA MER1_type -2003 609 120 2930 199 66 15 chr3 193051545 193052215 -24984943 + Charlie1a DNA MER1_type 2 705 -750 * 3585 204 41 31 chr3 193052214 193052925 -24984233 - MER45B DNA AcHobo -541 1040 319 1372 228 115 14 chr3 193052925 193053281 -24983877 + MSTD LTR MaLR 5 396 0 3585 204 41 31 chr3 193053281 193053377 -24983781 - MER45B DNA AcHobo -1262 319 225 396 305 63 36 chr3 193053385 193053608 -24983550 + L1ME LINE L1 5545 5773 -348 180 89 0 71 chr3 193053947 193054003 -24983155 + (TTTTTA)n Simple_repeat Simple_repeat 6 57 0 940 95 47 7 chr3 193054119 193054267 -24982891 - L1PA13 LINE L1 -4 6159 6006 663 152 9 0 chr3 193054269 193054374 -24982784 - L1P LINE L1 -1534 4612 4507 * 9665 206 120 21 chr3 193054371 193056565 -24980593 - L1PA13 LINE L1 -4387 2410 16 201 214 60 60 chr3 193057122 193057206 -24979952 + MIR3 SINE MIR 125 208 0 185 62 83 0 chr3 193057210 193057258 -24979900 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 1753 151 14 3 chr3 193057327 193057619 -24979539 - AluSq SINE Alu -17 296 2 435 349 74 18 chr3 193057864 193058093 -24979065 - MIR SINE MIR -19 243 2 24 0 0 0 chr3 193059266 193059290 -24977868 + AT_rich Low_complexity Low_complexity 1 24 0 841 246 69 9 chr3 193059310 193059542 -24977616 - MLT1F1 LTR MaLR 0 567 322 21 0 0 0 chr3 193059672 193059693 -24977465 + AT_rich Low_complexity Low_complexity 1 21 0 953 183 50 5 chr3 193060997 193061199 -24975959 + L1PA16 LINE L1 5945 6155 -11 300 338 78 24 chr3 193061414 193062171 -24974987 + L1MEc LINE L1 1014 1811 -4585 808 334 50 42 chr3 193062402 193063115 -24974043 + L1ME LINE L1 146 864 -5341 857 230 88 53 chr3 193063187 193063778 -24973380 + L1ME LINE L1 2020 2603 -3612 561 30 0 0 chr3 193063803 193063870 -24973288 + (TA)n Simple_repeat Simple_repeat 1 67 0 4940 240 25 33 chr3 193063916 193066664 -24970494 + L1PA13 LINE L1 1 2966 -3831 2111 151 31 0 chr3 193066664 193067014 -24970144 + L1PA15 LINE L1 5804 6165 0 420 214 39 45 chr3 193067223 193067377 -24969781 + L1ME LINE L1 2643 2795 -3420 245 254 32 0 chr3 193068503 193068566 -24968592 - MIR SINE MIR -61 147 83 456 324 33 11 chr3 193069172 193069354 -24967804 + MIR SINE MIR 20 205 -57 1397 232 79 33 chr3 193069540 193069906 -24967252 + MSTD LTR MaLR 1 383 -13 757 271 20 15 chr3 193071165 193071368 -24965790 - MIR SINE MIR -38 224 21 202 265 15 44 chr3 193071413 193071481 -24965677 - L2 LINE L2 -981 2333 2268 189 367 92 18 chr3 193072632 193072741 -24964417 + MIR SINE MIR 28 144 -118 267 343 19 0 chr3 193074980 193075085 -24962073 + L2 LINE L2 2718 2824 -490 26 64 0 0 chr3 193075104 193075151 -24962007 + AT_rich Low_complexity Low_complexity 1 47 0 2405 81 7 0 chr3 193075362 193075670 -24961488 + AluSg SINE Alu 1 310 0 962 185 54 22 chr3 193075887 193076109 -24961049 - MER58 DNA MER1_type -70 271 43 355 295 121 0 chr3 193076125 193076274 -24960884 + MIR SINE MIR 36 202 -60 273 265 24 0 chr3 193077230 193077313 -24959845 + L2 LINE L2 2239 2323 -991 252 280 80 30 chr3 193077795 193077895 -24959263 + MIR SINE MIR 60 164 -98 242 274 27 14 chr3 193078054 193078127 -24959031 - MIR3 SINE MIR -21 187 114 206 308 93 0 chr3 193079515 193079622 -24957536 + MIR SINE MIR 38 154 -108 195 283 164 19 chr3 193080888 193081047 -24956111 + MIR SINE MIR 81 262 0 198 340 104 38 chr3 193081680 193081786 -24955372 - L2 LINE L2 -194 3078 2966 1786 245 88 29 chr3 193083015 193083574 -24953584 - MLT1E LTR MaLR 0 593 2 2345 71 3 7 chr3 193083574 193083870 -24953288 - AluY SINE Alu -14 297 3 191 355 167 14 chr3 193085022 193085160 -24951998 + L2 LINE L2 3107 3265 -7 230 360 132 15 chr3 193085387 193085523 -24951635 - L2 LINE L2 0 3272 3121 184 380 8 25 chr3 193086255 193086376 -24950782 - MIR SINE MIR -44 218 100 1357 216 0 23 chr3 193086567 193086868 -24950290 - AluJb SINE Alu -1 311 18 2090 177 23 25 chr3 193086969 193087529 -24949629 - MLT2A2 LTR ERVL 0 554 1 492 301 87 0 chr3 193087733 193087835 -24949323 + MER58C DNA MER1_type 1 93 -2327 330 26 0 0 chr3 193087835 193087874 -24949284 + (CA)n Simple_repeat Simple_repeat 2 40 0 492 301 87 0 chr3 193087874 193087967 -24949191 + MER58C DNA MER1_type 93 213 -2 3547 155 19 20 chr3 193138544 193139633 -24897525 + L1M1 LINE L1 3062 4157 -3408 301 135 43 31 chr3 193140030 193140193 -24896965 + (TTATA)n Simple_repeat Simple_repeat 5 169 0 240 107 101 13 chr3 193140154 193140313 -24896845 + (TA)n Simple_repeat Simple_repeat 1 173 0 * 1911 136 11 0 chr3 193140313 193140599 -24896559 - AluSx SINE Alu -23 289 1 678 320 51 17 chr3 193140729 193141141 -24896017 - L1MEc LINE L1 -4285 2111 1686 418 332 68 64 chr3 193141297 193141592 -24895566 - L2 LINE L2 -564 2750 2455 2118 119 14 0 chr3 193141600 193141895 -24895263 + AluSx SINE Alu 1 299 -13 2803 253 140 11 chr3 193142091 193143174 -24893984 + MER69B DNA AcHobo 1 1223 -3 207 0 0 0 chr3 193143539 193143562 -24893596 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 233 248 16 16 chr3 193144119 193144240 -24892918 + (TA)n Simple_repeat Simple_repeat 1 121 0 33 25 0 0 chr3 193144440 193144480 -24892678 + AT_rich Low_complexity Low_complexity 1 40 0 1538 182 93 53 chr3 193144590 193145008 -24892150 + MER63B DNA MER1_type 1 435 -1 483 297 33 16 chr3 193145010 193145192 -24891966 - L2 LINE L2 -512 2802 2618 252 86 0 0 chr3 193145466 193145501 -24891657 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 2075 96 3 31 chr3 193145583 193145906 -24891252 - AluSp SINE Alu 0 315 1 648 341 24 17 chr3 193146334 193146621 -24890537 + Charlie2 DNA MER1_type 37 325 -2457 3492 204 83 12 chr3 193146627 193147563 -24889595 + Charlie2 DNA MER1_type 1860 2862 0 377 234 9 81 chr3 193147901 193148012 -24889146 - MIR SINE MIR -100 162 60 233 348 0 0 chr3 193148058 193148147 -24889011 - L1MC4 LINE L1 -1339 6703 6615 205 176 0 0 chr3 193148802 193148836 -24888322 + A-rich Low_complexity Low_complexity 4 37 0 332 238 149 94 chr3 193149010 193149088 -24888070 - L2 LINE L2 -1 3312 3240 183 42 0 0 chr3 193149088 193149112 -24888046 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1974 125 0 20 chr3 193149114 193149411 -24887747 - AluSq SINE Alu -22 291 1 332 238 149 94 chr3 193149411 193149510 -24887648 - L2 LINE L2 -73 3240 3122 664 296 11 11 chr3 193149593 193149769 -24887389 + MER5B DNA MER1_type 2 177 -1 287 309 73 8 chr3 193149850 193149973 -24887185 - L2 LINE L2 -438 2876 2746 543 128 0 0 chr3 193150245 193150331 -24886827 + (GGAA)n Simple_repeat Simple_repeat 1 86 0 1693 183 7 0 chr3 193150528 193150812 -24886346 - AluJo SINE Alu -26 286 1 24 32 0 0 chr3 193151078 193151109 -24886049 + AT_rich Low_complexity Low_complexity 1 31 0 1247 118 64 0 chr3 193151125 193151345 -24885813 + L1MA5A LINE L1 6061 6294 -3 325 357 79 4 chr3 193151577 193151818 -24885340 + L1M4 LINE L1 4388 4646 -1500 1172 71 0 0 chr3 193152326 193152467 -24884691 + AluY SINE Alu 20 160 -151 751 356 156 4 chr3 193152657 193153162 -24883996 - L3 LINE CR1 -581 996 415 2374 65 0 10 chr3 193155050 193155360 -24881798 + AluY SINE Alu 1 307 -4 460 180 100 10 chr3 193155643 193155743 -24881415 + L1M3 LINE L1 5688 5796 -372 329 145 16 0 chr3 193155852 193155914 -24881244 + GA-rich Low_complexity Low_complexity 2 64 0 204 347 35 52 chr3 193156724 193156897 -24880261 + MIR SINE MIR 22 191 -71 198 338 44 66 chr3 193157156 193157384 -24879774 + L2 LINE L2 2835 3057 -215 23 0 0 0 chr3 193158484 193158507 -24878651 + AT_rich Low_complexity Low_complexity 1 23 0 273 250 192 8 chr3 193159783 193159903 -24877255 + LTR67 LTR ERVL 411 552 -5 260 333 0 56 chr3 193160197 193160323 -24876835 + MIR SINE MIR 70 188 -74 252 305 17 59 chr3 193160490 193160608 -24876550 + MIR SINE MIR 3 115 -147 21 0 0 0 chr3 193160685 193160706 -24876452 + AT_rich Low_complexity Low_complexity 1 21 0 521 278 56 20 chr3 193160751 193160949 -24876209 + MIR SINE MIR 58 262 0 24 0 0 0 chr3 193161463 193161487 -24875671 + AT_rich Low_complexity Low_complexity 1 24 0 3229 77 13 9 chr3 193161513 193161969 -24875189 - L1PA10 LINE L1 -3 6165 5708 1680 131 61 72 chr3 193162108 193162483 -24874675 + THE1C LTR MaLR 5 375 0 22 0 0 0 chr3 193163459 193163481 -24873677 + AT_rich Low_complexity Low_complexity 1 22 0 323 256 16 70 chr3 193163783 193163853 -24873305 - L1ME4a LINE L1 0 6121 6060 2072 112 7 0 chr3 193163853 193164148 -24873010 + AluSq SINE Alu 1 297 -16 323 256 16 70 chr3 193164148 193164206 -24872952 - L1ME4a LINE L1 -61 6060 6000 225 288 17 0 chr3 193165408 193165467 -24871691 + L1MEc LINE L1 29 88 -6308 328 286 186 38 chr3 193165978 193166017 -24871141 + Charlie2 DNA MER1_type 1 33 -2829 1175 179 44 113 chr3 193166017 193166407 -24870751 + MLT1A1 LTR MaLR 1 363 -2 328 286 186 38 chr3 193166407 193166577 -24870581 + Charlie2 DNA MER1_type 33 241 -2621 308 77 0 0 chr3 193166597 193166636 -24870522 + MER9 LTR ERVK 1 39 -472 1564 116 20 8 chr3 193166736 193166986 -24870172 + MER9 LTR ERVK 259 511 0 300 310 11 0 chr3 193166988 193167075 -24870083 + Charlie2 DNA MER1_type 253 340 -2442 856 38 0 0 chr3 193167084 193167190 -24869968 - LTR12 LTR ERV1 0 714 609 451 324 72 14 chr3 193167192 193167399 -24869759 + Charlie2 DNA MER1_type 370 588 -2194 521 174 0 0 chr3 193168325 193168411 -24868747 + Charlie2a DNA MER1_type 1553 1638 -1224 1665 177 87 23 chr3 193168411 193168801 -24868357 - L1MB8 LINE L1 -2 6176 5762 1491 239 51 36 chr3 193168852 193169378 -24867780 + Charlie2a DNA MER1_type 1622 2155 -707 569 194 145 100 chr3 193169535 193169780 -24867378 - LTR1B LTR ERV1 -60 960 505 21 0 0 0 chr3 193169909 193169930 -24867228 + AT_rich Low_complexity Low_complexity 1 21 0 302 262 121 21 chr3 193170001 193170142 -24867016 - L1ME4a LINE L1 -177 5944 5790 22 0 0 0 chr3 193170378 193170400 -24866758 + AT_rich Low_complexity Low_complexity 1 22 0 363 235 8 15 chr3 193170727 193170859 -24866299 + CT-rich Low_complexity Low_complexity 3 133 0 384 77 0 0 chr3 193171661 193171713 -24865445 + (TA)n Simple_repeat Simple_repeat 2 53 0 43 20 0 0 chr3 193171935 193171985 -24865173 + AT_rich Low_complexity Low_complexity 1 50 0 2294 97 0 0 chr3 193172616 193172914 -24864244 - AluSc SINE Alu -11 298 1 540 260 99 18 chr3 193174749 193174983 -24862175 + MLT1L LTR MaLR 239 573 -42 2019 165 45 30 chr3 193175295 193175833 -24861325 + MLT2A2 LTR ERVL 1 554 0 2692 117 29 7 chr3 193175995 193176414 -24860744 - MSTA LTR MaLR 0 428 1 2258 108 0 3 chr3 193177068 193177374 -24859784 - AluSc SINE Alu -4 305 1 591 90 0 0 chr3 193178026 193178104 -24859054 - AluSc SINE Alu -18 291 214 2252 96 7 3 chr3 193178764 193179065 -24858093 - AluSq SINE Alu -11 302 1 219 346 101 14 chr3 193179193 193179410 -24857748 - L2 LINE L2 -2871 443 208 247 325 33 32 chr3 193179631 193179734 -24857424 - MIR SINE MIR -87 121 18 582 290 24 29 chr3 193180550 193180757 -24856401 - MIR3 SINE MIR 0 208 3 483 275 21 52 chr3 193181106 193181299 -24855859 - L1ME3 LINE L1 0 6162 5976 * 1223 268 45 28 chr3 193181298 193181517 -24855641 - L1ME3 LINE L1 -809 5337 5123 2160 99 3 22 chr3 193181517 193181694 -24855464 - AluSc SINE Alu -2 307 137 2712 22 0 0 chr3 193181694 193182005 -24855153 - AluY SINE Alu 0 311 1 2160 99 3 22 chr3 193182005 193182140 -24855018 - AluSc SINE Alu -172 137 1 1223 268 45 28 chr3 193182140 193182453 -24854705 - L1ME3 LINE L1 -1023 5123 4796 2552 276 82 15 chr3 193182471 193183600 -24853558 - L1ME3 LINE L1 -2646 3500 2296 25 0 0 0 chr3 193183601 193183626 -24853532 + AT_rich Low_complexity Low_complexity 1 25 0 249 223 76 6 chr3 193183626 193183783 -24853375 + (TTAAA)n Simple_repeat Simple_repeat 5 172 0 33 0 0 0 chr3 193183783 193183816 -24853342 + AT_rich Low_complexity Low_complexity 1 33 0 1089 150 23 71 chr3 193183816 193183938 -24853220 - L1MA7 LINE L1 -1 6290 6186 1912 153 45 83 chr3 193183938 193184014 -24853144 - MSTB LTR MaLR 0 426 349 1908 157 10 0 chr3 193184014 193184314 -24852844 + AluJb SINE Alu 9 311 -1 1912 153 45 83 chr3 193184314 193184680 -24852478 - MSTB LTR MaLR -77 349 1 1089 150 23 71 chr3 193184680 193184823 -24852335 - L1MA7 LINE L1 -105 6186 6038 230 137 34 26 chr3 193184823 193184940 -24852218 + (TTATA)n Simple_repeat Simple_repeat 5 122 0 934 173 121 8 chr3 193185053 193185301 -24851857 + L1MA9 LINE L1 5956 6231 -81 260 245 0 10 chr3 193185357 193185459 -24851699 + (TA)n Simple_repeat Simple_repeat 2 102 0 282 165 13 63 chr3 193185463 193185542 -24851616 + L1MA9 LINE L1 6216 6290 -22 194 152 0 22 chr3 193185595 193185641 -24851517 + A-rich Low_complexity Low_complexity 2 46 0 296 286 81 25 chr3 193185781 193185942 -24851216 + HAL1b LINE L1 379 515 -833 327 272 99 19 chr3 193186713 193186926 -24850232 + L1ME4a LINE L1 5640 5869 -252 353 319 0 22 chr3 193187932 193188067 -24849091 - Charlie8 DNA MER1_type -2162 255 124 258 32 0 0 chr3 193188069 193188100 -24849058 + (TG)n Simple_repeat Simple_repeat 1 31 0 253 133 44 44 chr3 193188123 193188213 -24848945 + GA-rich Low_complexity Low_complexity 2 91 0 198 0 0 0 chr3 193188458 193188480 -24848678 + (TG)n Simple_repeat Simple_repeat 1 22 0 611 283 112 0 chr3 193189087 193189292 -24847866 - MIR SINE MIR -34 228 1 199 242 16 0 chr3 193189898 193189960 -24847198 + L2 LINE L2 2325 2387 -927 591 349 110 8 chr3 193189998 193190362 -24846796 + L2 LINE L2 1744 2144 -1170 890 215 5 12 chr3 193190390 193190585 -24846573 - MLT1D LTR MaLR -2 491 291 1770 206 94 82 chr3 193190606 193192242 -24844916 + MER31-int LTR ERV1 1270 4022 -2576 1226 195 99 83 chr3 193192229 193193215 -24843943 + MER31-int LTR ERV1 3438 4078 -937 * 286 188 0 78 chr3 193193209 193193273 -24843885 + MER31-int LTR ERV1 5200 5258 -1073 * 315 235 118 0 chr3 193193267 193193352 -24843806 + MER31-int LTR ERV1 3995 4089 -847 2862 224 88 21 chr3 193193364 193194079 -24843079 + MER31-int LTR ERV1 3605 4367 -504 213 65 0 0 chr3 193194420 193194451 -24842707 + (T)n Simple_repeat Simple_repeat 1 31 0 211 278 14 14 chr3 193194883 193194955 -24842203 + CT-rich Low_complexity Low_complexity 3 74 0 546 158 56 177 chr3 193195185 193195451 -24841707 - MER106A DNA MER1_type -2 234 1 394 286 125 6 chr3 193195508 193195676 -24841482 + MIR SINE MIR 2 189 -73 2191 103 18 29 chr3 193196101 193196442 -24840716 - MER44D DNA MER2_type -2 607 1 617 229 153 6 chr3 193196495 193196652 -24840506 + MER5A DNA MER1_type 9 188 -1 2212 110 0 0 chr3 193196849 193197148 -24840010 + AluSx SINE Alu 5 303 -9 273 386 6 28 chr3 193197153 193197329 -24839829 - MER5A DNA MER1_type -11 178 7 357 43 0 0 chr3 193198470 193198517 -24838641 + (TC)n Simple_repeat Simple_repeat 2 48 0 198 0 0 0 chr3 193199424 193199446 -24837712 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 668 299 82 13 chr3 193201409 193201640 -24835518 - MIR SINE MIR -2 260 14 195 114 0 0 chr3 193203033 193203068 -24834090 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 1936 149 6 11 chr3 193203068 193203656 -24833502 - L1PA8 LINE L1 -24 6463 7 1720 154 3 10 chr3 193203970 193204268 -24832890 - L1P3 LINE L1 -5573 302 7 271 245 167 10 chr3 193205236 193205338 -24831820 + L3b LINE CR1 1278 1395 -188 1982 76 45 59 chr3 193205433 193205747 -24831411 - AluSp SINE Alu 0 310 1 4370 189 39 75 chr3 193205790 193206834 -24830324 - L1MD1 LINE L1 -5 6237 5157 1164 185 64 70 chr3 193206834 193207132 -24830026 - AluJb SINE Alu -5 297 2 4370 189 39 75 chr3 193207132 193207241 -24829917 - L1MD1 LINE L1 -1085 5157 5046 1913 151 3 0 chr3 193207241 193207526 -24829632 - AluSx SINE Alu -26 286 1 4370 189 39 75 chr3 193207526 193207787 -24829371 - L1MD1 LINE L1 -1196 5046 4881 791 249 15 113 chr3 193207875 193208140 -24829018 - MIR SINE MIR -14 248 10 342 67 0 0 chr3 193208459 193208504 -24828654 + (CA)n Simple_repeat Simple_repeat 2 46 0 637 170 27 0 chr3 193209578 193209690 -24827468 + AluJb SINE Alu 11 125 -187 682 237 75 85 chr3 193210278 193210774 -24826384 + L2 LINE L2 2668 3224 -89 3648 98 8 0 chr3 193210792 193211315 -24825843 + L1MA1 LINE L1 5776 6302 0 313 268 24 57 chr3 193211782 193211905 -24825253 + MIR SINE MIR 30 148 -114 1470 226 79 34 chr3 193211915 193212322 -24824836 - MLT1D LTR MaLR 0 505 81 635 157 0 0 chr3 193212603 193212711 -24824447 + AluSp/q SINE Alu 204 311 -2 1614 137 34 27 chr3 193214105 193214398 -24822760 - AluSx SINE Alu -17 295 1 1672 153 44 0 chr3 193214486 193214780 -24822378 - L1PB4 LINE L1 -2 6154 5848 1976 125 10 0 chr3 193214780 193215091 -24822067 + L1PB4 LINE L1 5519 5832 -324 258 363 44 9 chr3 193215162 193215275 -24821883 + MIR3 SINE MIR 83 199 -9 255 31 0 0 chr3 193215807 193215839 -24821319 + (CA)n Simple_repeat Simple_repeat 2 33 0 235 221 52 65 chr3 193216171 193216248 -24820910 - MARNA DNA Mariner -6 580 505 23 33 0 0 chr3 193216425 193216455 -24820703 + AT_rich Low_complexity Low_complexity 1 30 0 2088 123 7 16 chr3 193216714 193217024 -24820134 - AluSx SINE Alu -5 307 1 557 281 57 24 chr3 193217047 193217293 -24819865 - LTR33 LTR ERVL -4 517 264 327 318 41 18 chr3 193218385 193218555 -24818603 - Charlie2 DNA MER1_type -1 2861 2688 706 273 94 57 chr3 193218733 193219276 -24817882 + L1MEc LINE L1 1253 1815 -4581 1012 261 56 14 chr3 193219357 193219953 -24817205 + L1MEc LINE L1 1930 2506 -3709 975 208 0 0 chr3 193219954 193220122 -24817036 - AluJb SINE Alu -14 298 131 888 281 40 17 chr3 193220145 193220494 -24816664 + L1MEc LINE L1 2548 2904 -3311 2114 267 31 14 chr3 193220499 193221088 -24816070 + MER90 LTR ERV1 1 599 -15 366 194 169 8 chr3 193221099 193221223 -24815935 + L1MEc LINE L1 2911 3054 -3161 8243 243 52 42 chr3 193221248 193222212 -24814946 + L1MC2 LINE L1 368 1321 -5243 2006 121 0 4 chr3 193222212 193222523 -24814635 + AluSc SINE Alu 1 310 0 8243 243 52 42 chr3 193222523 193226697 -24810461 + L1MC2 LINE L1 1321 5715 -849 14935 162 17 14 chr3 193226724 193230766 -24806392 + L1MA3 LINE L1 2249 6305 0 3290 204 99 52 chr3 193230778 193231774 -24805384 + L1MC2 LINE L1 5709 6751 -11 22 35 0 0 chr3 193232626 193232655 -24804503 + AT_rich Low_complexity Low_complexity 1 29 0 204 40 0 0 chr3 193233490 193233515 -24803643 + (A)n Simple_repeat Simple_repeat 1 25 0 344 182 40 71 chr3 193233952 193234051 -24803107 + MLT1F LTR MaLR 1 96 -446 * 599 231 43 24 chr3 193234049 193234215 -24802943 + MLT1H1 LTR MaLR 406 555 0 2063 110 7 0 chr3 193234333 193234625 -24802533 + AluSg SINE Alu 1 294 -16 503 290 32 21 chr3 193234652 193234838 -24802320 - MIR SINE MIR -2 260 73 232 298 96 48 chr3 193235037 193235141 -24802017 - MIR3 SINE MIR -49 159 51 21 0 0 0 chr3 193235471 193235492 -24801666 + AT_rich Low_complexity Low_complexity 1 21 0 229 292 45 11 chr3 193236117 193236206 -24800952 - MIR3 SINE MIR -4 204 113 404 316 60 30 chr3 193236760 193236885 -24800273 - MIR SINE MIR -15 247 127 496 138 0 0 chr3 193236885 193236965 -24800193 - MADE1 DNA Mariner 0 80 1 404 316 60 30 chr3 193236965 193237073 -24800085 - MIR SINE MIR -135 127 7 232 123 35 35 chr3 193237219 193237276 -24799882 + A-rich Low_complexity Low_complexity 1 57 0 671 220 116 11 chr3 193237334 193237611 -24799547 + L1M4 LINE L1 2226 2531 -3615 330 301 91 0 chr3 193237614 193237757 -24799401 + L1M4 LINE L1 2815 2970 -3176 295 287 59 42 chr3 193237859 193238148 -24799010 + L1M4 LINE L1 3064 3357 -2789 412 218 40 29 chr3 193238250 193238424 -24798734 + (TA)n Simple_repeat Simple_repeat 2 177 0 191 185 0 19 chr3 193238501 193238555 -24798603 + (TA)n Simple_repeat Simple_repeat 2 54 0 659 268 35 41 chr3 193238558 193238901 -24798257 + L1M4 LINE L1 3788 4128 -2018 1691 75 0 0 chr3 193243208 193243422 -24793736 + AluY SINE Alu 88 301 -10 465 103 0 0 chr3 193243686 193243754 -24793404 + (TA)n Simple_repeat Simple_repeat 2 69 0 21 89 0 0 chr3 193244379 193244435 -24792723 + AT_rich Low_complexity Low_complexity 1 56 0 187 210 52 5 chr3 193244951 193245018 -24792140 + MIR SINE MIR 63 135 -73 695 231 0 0 chr3 193245018 193245161 -24791997 - AluSq/x SINE Alu -170 143 1 496 301 36 0 chr3 193245321 193245540 -24791618 - L1MC4 LINE L1 -126 7916 7690 26 30 0 0 chr3 193246977 193247010 -24790148 + AT_rich Low_complexity Low_complexity 1 33 0 2237 286 111 18 chr3 193247874 193249062 -24788096 + L2 LINE L2 2009 3313 0 239 337 32 11 chr3 193249396 193249491 -24787667 - MER5A DNA MER1_type -92 97 1 381 319 44 9 chr3 193250391 193250504 -24786654 - MIR SINE MIR -125 137 21 225 0 0 0 chr3 193251025 193251050 -24786108 + (CCCTG)n Simple_repeat Simple_repeat 1 25 0 216 300 0 17 chr3 193252223 193252283 -24784875 + G-rich Low_complexity Low_complexity 5 63 0 263 297 97 36 chr3 193255610 193255775 -24781383 - MIR SINE MIR 0 262 88 211 398 0 9 chr3 193256377 193256485 -24780673 + MIR SINE MIR 24 130 -78 237 349 18 18 chr3 193256870 193256979 -24780179 + MIR SINE MIR 36 144 -64 21016 184 26 15 chr3 193257195 193263343 -24773815 + L1PA13 LINE L1 5 7319 -282 1954 121 86 40 chr3 193263343 193263691 -24773467 + THE1B LTR MaLR 1 364 0 21016 184 26 15 chr3 193263691 193263978 -24773180 + L1PA13 LINE L1 7319 7601 0 554 175 9 0 chr3 193264182 193264296 -24772862 + GA-rich Low_complexity Low_complexity 4 118 0 522 333 47 10 chr3 193264312 193264504 -24772654 + MIR SINE MIR 20 218 -44 2118 80 0 4 chr3 193265278 193265553 -24771605 - AluY SINE Alu -2 309 36 652 297 66 0 chr3 193265728 193265910 -24771248 - MER91A DNA MER1_type -2 194 1 332 260 60 10 chr3 193265972 193266072 -24771086 - MIR SINE MIR -155 107 3 554 331 31 34 chr3 193266959 193267252 -24769906 + MLT1I LTR MaLR 14 305 -104 22 56 0 0 chr3 193270929 193270965 -24766193 + AT_rich Low_complexity Low_complexity 1 36 0 344 295 16 33 chr3 193271401 193271523 -24765635 + MIR SINE MIR 6 125 -137 405 153 0 0 chr3 193271525 193271615 -24765543 - AluJo SINE Alu 0 315 226 932 192 12 6 chr3 193271616 193271783 -24765375 - AluJo SINE Alu -140 172 5 448 338 14 0 chr3 193271785 193271927 -24765231 + MIR SINE MIR 111 254 -8 2028 156 21 64 chr3 193272627 193273050 -24764108 + MLT2D LTR ERVL 1 405 -9 293 83 14 111 chr3 193273170 193273242 -24763916 + MLT2B2 LTR ERVL 456 515 0 330 252 48 10 chr3 193273829 193273932 -24763226 - MIR3 SINE MIR -52 156 50 1886 273 47 28 chr3 193274683 193275625 -24761533 + L1MEc LINE L1 1313 2272 -4124 960 311 38 49 chr3 193275628 193276155 -24761003 + L1ME3A LINE L1 8 528 -5542 295 243 41 15 chr3 193276161 193276295 -24760863 + L1ME3A LINE L1 578 715 -5368 2009 255 62 87 chr3 193276400 193277423 -24759735 + L1ME3A LINE L1 4118 5065 -1039 3280 124 4 0 chr3 193277423 193277924 -24759234 + L1PA16 LINE L1 5660 6162 -4 2009 255 62 87 chr3 193277924 193278901 -24758257 + L1ME3A LINE L1 5065 6065 -39 380 284 76 53 chr3 193279319 193279583 -24757575 - MLT1J LTR MaLR -3 508 239 536 252 26 0 chr3 193331007 193331158 -24706000 + MIR SINE MIR 70 224 -38 453 307 113 16 chr3 193331777 193332106 -24705052 + L2 LINE L2 2686 3051 -221 590 107 0 0 chr3 193332260 193332344 -24704814 - AluS SINE Alu -228 84 1 1926 100 0 0 chr3 193332486 193332737 -24704421 + AluSx SINE Alu 3 253 -59 317 222 56 69 chr3 193332740 193332884 -24704274 + L2 LINE L2 3110 3251 -62 298 238 211 20 chr3 193332979 193333126 -24704032 + MIR SINE MIR 73 247 -15 * 815 307 137 24 chr3 193333120 193333746 -24703412 + L2 LINE L2 2618 3313 0 278 336 28 28 chr3 193334641 193334748 -24702410 + L2 LINE L2 3155 3261 -11 311 198 70 35 chr3 193334997 193335083 -24702075 + MIR SINE MIR 173 261 -1 255 280 32 64 chr3 193335602 193335727 -24701431 + L2 LINE L2 2306 2426 -888 183 355 69 55 chr3 193335913 193336130 -24701028 + L2 LINE L2 2825 3044 -228 1019 145 0 0 chr3 193336207 193336372 -24700786 + AluSg/x SINE Alu 138 302 0 1809 138 59 0 chr3 193336436 193336725 -24700433 + AluSx SINE Alu 1 306 -6 354 156 0 0 chr3 193337575 193337639 -24699519 + CT-rich Low_complexity Low_complexity 3 66 0 22 70 0 0 chr3 193338012 193338055 -24699103 + AT_rich Low_complexity Low_complexity 1 43 0 251 280 20 60 chr3 193338160 193338260 -24698898 - MIR3 SINE MIR -110 98 3 540 316 32 16 chr3 193338687 193338877 -24698281 - MIR SINE MIR -41 221 29 274 268 95 63 chr3 193339014 193339204 -24697954 - MLT1J LTR MaLR -92 419 224 22 0 0 0 chr3 193340777 193340799 -24696359 + AT_rich Low_complexity Low_complexity 1 22 0 539 223 133 4 chr3 193340953 193341092 -24696066 - MER5B DNA MER1_type -1 177 35 269 341 96 45 chr3 193342141 193342181 -24694977 + L3b LINE CR1 1137 1174 -409 2491 74 0 3 chr3 193342181 193342493 -24694665 + AluY SINE Alu 1 311 0 269 341 96 45 chr3 193342493 193342766 -24694392 + L3b LINE CR1 1174 1466 -117 306 298 145 0 chr3 193344064 193344195 -24692963 + MIR3 SINE MIR 32 181 -27 50 92 0 0 chr3 193344375 193344516 -24692642 + AT_rich Low_complexity Low_complexity 1 141 0 323 221 68 61 chr3 193344884 193345047 -24692111 - L1ME4a LINE L1 -248 5873 5710 570 188 13 40 chr3 193345317 193345466 -24691692 - L1MA10 LINE L1 -9 6325 6181 990 252 93 31 chr3 193345468 193345888 -24691270 - L1ME1 LINE L1 -148 6087 5642 3810 255 96 64 chr3 193346053 193347505 -24689653 - L1ME1 LINE L1 -1786 4429 3025 2232 66 7 21 chr3 193347505 193347830 -24689328 + AluSq SINE Alu 1 321 0 3810 255 96 64 chr3 193347830 193348096 -24689062 - L1ME1 LINE L1 -3190 3025 2769 197 23 70 23 chr3 193348096 193348139 -24689019 + A-rich Low_complexity Low_complexity 1 45 0 3810 255 96 64 chr3 193348139 193350737 -24686421 - L1ME1 LINE L1 -3446 2769 9 269 276 71 0 chr3 193350771 193350869 -24686289 - L2 LINE L2 0 3313 3209 1410 227 75 80 chr3 193350926 193351316 -24685842 + L1MC5 LINE L1 6795 7181 -780 2160 107 0 3 chr3 193351316 193351615 -24685543 - AluSx SINE Alu -1 311 14 1410 227 75 80 chr3 193351615 193351946 -24685212 + L1MC5 LINE L1 7181 7512 -449 496 250 41 52 chr3 193352601 193352773 -24684385 + L1MC5 LINE L1 7711 7880 -81 3144 162 41 13 chr3 193352851 193353408 -24683750 + MER6A DNA MER2_type 33 605 0 565 266 0 0 chr3 193353580 193353708 -24683450 - FLAM_A SINE Alu -5 137 10 1418 306 184 36 chr3 193355806 193357328 -24679830 - L2 LINE L2 0 3313 1568 429 221 0 11 chr3 193357398 193357493 -24679665 - MER5B DNA MER1_type -81 97 4 515 299 75 33 chr3 193357595 193357836 -24679322 - L1ME3A LINE L1 -236 5934 5684 25 0 0 0 chr3 193358168 193358193 -24678965 + AT_rich Low_complexity Low_complexity 1 25 0 502 239 156 68 chr3 193358417 193358802 -24678356 + L1ME4a LINE L1 5516 5934 -187 339 132 0 0 chr3 193358815 193358883 -24678275 + (TC)n Simple_repeat Simple_repeat 1 68 0 391 333 24 12 chr3 193360617 193360785 -24676373 + MER5B DNA MER1_type 4 173 -5 401 296 105 40 chr3 193361073 193361445 -24675713 + L1ME4a LINE L1 5715 6110 -11 574 186 1 13 chr3 193361943 193362079 -24675079 - L1MA7 LINE L1 -1 6299 6159 1115 133 6 0 chr3 193362358 193362539 -24674619 + L1MD1 LINE L1 5505 5686 -556 1546 214 34 129 chr3 193362539 193362725 -24674433 + MER74A LTR ERVL 1 203 -355 1692 162 61 17 chr3 193362725 193363084 -24674074 - THE1C LTR MaLR 0 375 1 1546 214 34 129 chr3 193363084 193363509 -24673649 + MER74A LTR ERVL 203 554 -4 2476 186 82 15 chr3 193363512 193364033 -24673125 + L1MD1 LINE L1 5681 6236 -6 216 214 0 0 chr3 193364186 193364228 -24672930 + (CATATA)n Simple_repeat Simple_repeat 6 47 0 372 227 141 23 chr3 193364747 193364875 -24672283 + HERVL40 LTR ERVL 17 159 -5371 350 280 110 17 chr3 193365008 193365126 -24672032 + HERVL40 LTR ERVL 440 568 -4962 1503 190 26 87 chr3 193365241 193365656 -24671502 - MLT1B LTR MaLR 0 390 1 565 239 0 0 chr3 193365656 193365769 -24671389 + HERVL40 LTR ERVL 632 744 -4786 820 301 47 16 chr3 193365769 193366088 -24671070 + HERVL40 LTR ERVL 1297 1625 -3905 2640 262 51 41 chr3 193366158 193367723 -24669435 + HERVL40 LTR ERVL 2058 3708 -1822 300 206 22 43 chr3 193367725 193367817 -24669341 - L1M4 LINE L1 -931 5215 5126 767 245 109 0 chr3 193367897 193368081 -24669077 - MIR SINE MIR -58 204 1 344 304 88 16 chr3 193368112 193368237 -24668921 + L2 LINE L2 3139 3272 0 200 89 22 44 chr3 193369502 193369547 -24667611 + (TAA)n Simple_repeat Simple_repeat 3 46 0 258 303 26 0 chr3 193369904 193369980 -24667178 - MER5B DNA MER1_type -51 127 50 368 313 0 27 chr3 193370724 193370836 -24666322 - MER5B DNA MER1_type -68 110 2 2261 112 0 3 chr3 193372348 193372653 -24664505 + AluSc SINE Alu 3 306 -3 270 180 0 0 chr3 193373871 193373932 -24663226 + A-rich Low_complexity Low_complexity 1 61 0 181 238 0 24 chr3 193374306 193374348 -24662810 - MIR SINE MIR -3 259 219 * 249 327 129 0 chr3 193374314 193374415 -24662743 - L2 LINE L2 -16 3256 3143 432 0 0 0 chr3 193376466 193376514 -24660644 + (CA)n Simple_repeat Simple_repeat 2 49 0 317 292 92 8 chr3 193376514 193376634 -24660524 - MIR SINE MIR -124 138 9 250 235 29 0 chr3 193376815 193376883 -24660275 - L1ME LINE L1 -342 5779 5710 2268 88 0 0 chr3 193376957 193377252 -24659906 + AluSg SINE Alu 1 295 -15 218 191 0 0 chr3 193378130 193378172 -24658986 + T-rich Low_complexity Low_complexity 4 45 0 451 280 34 38 chr3 193378655 193378821 -24658337 - MIR SINE MIR -63 145 2 3390 242 111 36 chr3 193380150 193380318 -24656840 + Zaphod DNA AcHobo 11 165 -3866 11446 27 6 0 chr3 193380318 193382441 -24654717 + L1PA3 LINE L1 4026 6155 0 3390 242 111 36 chr3 193382441 193383769 -24653389 + Zaphod DNA AcHobo 165 1670 -2361 1549 68 16 80 chr3 193383803 193384052 -24653106 - L1PA13 LINE L1 -326 5837 5605 2231 77 22 0 chr3 193384052 193384363 -24652795 + L1PA13 LINE L1 5845 6162 -1 456 261 98 102 chr3 193384374 193384814 -24652344 + Zaphod DNA AcHobo 1684 2121 -1910 1500 252 81 19 chr3 193385080 193385424 -24651734 + L1MC4a LINE L1 5327 5715 -2093 351 44 0 0 chr3 193385424 193385469 -24651689 + (CA)n Simple_repeat Simple_repeat 2 46 0 1500 252 81 19 chr3 193385469 193385640 -24651518 + L1MC4a LINE L1 5715 5874 -1934 566 211 6 34 chr3 193385664 193385839 -24651319 + MER69 DNA AcHobo 2345 2514 -12 307 264 161 13 chr3 193385950 193386105 -24651053 - MER5B DNA MER1_type 0 178 1 22 56 0 0 chr3 193386155 193386191 -24650967 + AT_rich Low_complexity Low_complexity 1 36 0 216 279 108 8 chr3 193386301 193386430 -24650728 + MIR SINE MIR 1 142 -120 350 134 15 0 chr3 193386627 193386694 -24650464 + (TCTA)n Simple_repeat Simple_repeat 4 71 0 3743 93 30 0 chr3 193386773 193387299 -24649859 - L1PA10 LINE L1 -15 6153 5612 603 200 0 0 chr3 193388347 193388447 -24648711 + U6 snRNA snRNA 7 106 -1 2319 171 14 0 chr3 193388469 193388890 -24648268 + L1MB3 LINE L1 5751 6177 -6 341 250 97 40 chr3 193388910 193389034 -24648124 + MER5A DNA MER1_type 59 189 0 207 336 0 45 chr3 193388939 193389049 -24648109 - MER5A DNA MER1_type -83 106 2 * 376 304 85 4 chr3 193389375 193389570 -24647588 - MIR SINE MIR -44 218 3 210 320 113 0 chr3 193389583 193389680 -24647478 - MIR SINE MIR -71 191 84 453 302 80 29 chr3 193390088 193390363 -24646795 - Charlie2 DNA MER1_type -2570 292 4 723 243 136 19 chr3 193390399 193390605 -24646553 - MLT1E1 LTR MaLR -13 641 412 1258 197 38 41 chr3 193390657 193390940 -24646218 - MLT1E1 LTR MaLR -385 265 3 315 172 17 0 chr3 193393769 193393827 -24643331 + L2 LINE L2 3214 3272 0 22 0 0 0 chr3 193394189 193394211 -24642947 + AT_rich Low_complexity Low_complexity 1 22 0 309 286 30 89 chr3 193394635 193394803 -24642355 + MIR3 SINE MIR 3 160 -48 477 0 0 0 chr3 193396335 193396388 -24640770 + (TA)n Simple_repeat Simple_repeat 1 53 0 1898 162 0 7 chr3 193396834 193397136 -24640022 + AluSx SINE Alu 1 300 -12 261 224 86 0 chr3 193398338 193398396 -24638762 - L2 LINE L2 0 3313 3251 296 344 28 44 chr3 193398456 193398636 -24638522 - MIR3 SINE MIR -7 201 25 986 186 34 15 chr3 193398888 193399092 -24638066 - MER3 DNA MER1_type 0 209 2 25 31 0 0 chr3 193399641 193399673 -24637485 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr3 193400368 193400390 -24636768 + AT_rich Low_complexity Low_complexity 1 22 0 330 26 0 0 chr3 193401408 193401447 -24635711 + (CA)n Simple_repeat Simple_repeat 2 40 0 22 35 0 0 chr3 193402431 193402460 -24634698 + AT_rich Low_complexity Low_complexity 1 29 0 326 250 10 42 chr3 193404253 193404349 -24632809 + MIR SINE MIR 13 105 -157 1415 214 94 75 chr3 193404864 193405396 -24631762 - MLT1F LTR MaLR 0 542 1 1014 266 62 151 chr3 193405402 193406581 -24630577 - MLT1A1-int LTR MaLR -6 1365 292 333 208 19 66 chr3 193406653 193406759 -24630399 - MLT1A1-int LTR MaLR -1270 101 1 2267 97 156 3 chr3 193408340 193408711 -24628447 - MSTA LTR MaLR 0 428 1 30 27 0 0 chr3 193411281 193411318 -24625840 + AT_rich Low_complexity Low_complexity 1 37 0 454 195 73 32 chr3 193411564 193411687 -24625471 + L1MCc LINE L1 22 149 -6274 1502 218 20 28 chr3 193411692 193412050 -24625108 - MLT1A1 LTR MaLR -6 359 5 2638 277 50 72 chr3 193412053 193412645 -24624513 + L1MCc LINE L1 142 746 -5677 1808 191 46 3 chr3 193412645 193412995 -24624163 + MLT1A1 LTR MaLR 1 365 0 2638 277 50 72 chr3 193412995 193413828 -24623330 + L1MCc LINE L1 746 1535 -4888 1829 130 125 38 chr3 193413960 193414123 -24623035 - MSTA LTR MaLR -3 425 278 2103 118 14 0 chr3 193414123 193414410 -24622748 - AluSq SINE Alu -18 295 5 1829 130 125 38 chr3 193414410 193414637 -24622521 - MSTA LTR MaLR -150 278 1 2564 265 74 34 chr3 193414666 193417017 -24620141 + L1MCc LINE L1 1547 4155 -2786 2060 156 75 24 chr3 193417028 193417530 -24619628 - MLT2A2 LTR ERVL 0 554 1 870 244 59 7 chr3 193417536 193417823 -24619335 + L1MCc LINE L1 4168 4469 -2472 28 0 0 0 chr3 193417831 193417859 -24619299 + AT_rich Low_complexity Low_complexity 1 28 0 222 37 0 0 chr3 193417925 193417952 -24619206 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 348 271 96 40 chr3 193417966 193418165 -24618993 - L2 LINE L2 -92 3221 3012 459 211 8 31 chr3 193418211 193418339 -24618819 + L1MEd LINE L1 1084 1208 -4911 2119 114 0 3 chr3 193419992 193420290 -24616868 + AluSx SINE Alu 1 297 -15 2112 86 4 4 chr3 193420294 193420592 -24616566 + AluY SINE Alu 3 300 0 199 390 68 7 chr3 193420878 193421024 -24616134 + MIR SINE MIR 32 186 -76 27 29 0 0 chr3 193421567 193421601 -24615557 + AT_rich Low_complexity Low_complexity 1 34 0 274 278 56 37 chr3 193422037 193422145 -24615013 - L2 LINE L2 -8 3305 3196 374 316 14 7 chr3 193422798 193422937 -24614221 - HAL1 LINE L1 -766 1741 1602 22 0 0 0 chr3 193424799 193424821 -24612337 + AT_rich Low_complexity Low_complexity 1 22 0 2136 111 3 0 chr3 193425725 193426023 -24611135 + AluSx SINE Alu 2 300 -12 416 289 52 46 chr3 193426436 193426609 -24610549 - MIR SINE MIR -12 250 77 264 30 0 0 chr3 193426834 193426867 -24610291 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 303 321 19 31 chr3 193427970 193428132 -24609026 + MLT2C2 LTR ERVL 42 201 -263 * 1868 241 33 64 chr3 193427989 193428571 -24608587 + MLT1E2 LTR MaLR 61 624 -2 304 236 101 11 chr3 193428729 193428818 -24608340 - MER5A DNA MER1_type -78 111 15 545 277 28 6 chr3 193429551 193429728 -24607430 + L1ME3A LINE L1 5978 6158 -12 25 31 0 0 chr3 193430192 193430224 -24606934 + AT_rich Low_complexity Low_complexity 1 32 0 344 278 16 63 chr3 193430245 193430371 -24606787 + L2 LINE L2 3193 3312 -1 323 396 40 0 chr3 193430423 193430648 -24606510 + HAL1b LINE L1 412 645 -703 843 244 73 25 chr3 193432116 193432513 -24604645 - Charlie2 DNA MER1_type -3 2859 2444 1847 284 70 43 chr3 193432567 193433404 -24603754 - Charlie2b DNA MER1_type -1754 1028 169 1153 71 0 0 chr3 193433537 193433677 -24603481 + AluY SINE Alu 143 282 -29 583 229 159 6 chr3 193433738 193433895 -24603263 + MER5A DNA MER1_type 9 189 0 25 0 0 0 chr3 193434459 193434484 -24602674 + AT_rich Low_complexity Low_complexity 1 25 0 1744 171 3 16 chr3 193434654 193434963 -24602195 - AluJo SINE Alu 0 312 8 2240 105 6 10 chr3 193435903 193436217 -24600941 - AluSq SINE Alu 0 313 1 247 352 0 0 chr3 193436330 193436401 -24600757 + L2 LINE L2 3200 3270 -2 254 302 75 80 chr3 193436890 193437102 -24600056 + L3 LINE CR1 1262 1472 -105 302 196 11 0 chr3 193437267 193437359 -24599799 + (TCCA)n Simple_repeat Simple_repeat 4 96 0 493 251 104 44 chr3 193437615 193437798 -24599360 - MIR SINE MIR -57 205 12 4523 171 29 49 chr3 193439313 193440971 -24596187 + L1MA7 LINE L1 4673 6289 -2 1333 179 49 13 chr3 193441576 193441883 -24595275 + MER33 DNA MER1_type 3 320 -4 297 307 157 7 chr3 193442111 193442264 -24594894 - MIR3 SINE MIR -3 205 30 24 32 0 0 chr3 193443367 193443398 -24593760 + AT_rich Low_complexity Low_complexity 1 31 0 2098 127 3 0 chr3 193443406 193443689 -24593469 + AluSx SINE Alu 2 285 -27 218 71 0 48 chr3 193443699 193443741 -24593417 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 359 209 0 23 chr3 193444130 193444216 -24592942 - MER52A LTR ERV1 0 1755 1672 * 3278 155 125 163 chr3 193444194 193445438 -24591720 - MER52A LTR ERV1 -559 1196 1 925 163 163 30 chr3 193447225 193447458 -24589700 - Tigger3(Golem) DNA MER2_type -2 3027 2764 2681 123 36 0 chr3 193447599 193447988 -24589170 - L1P3 LINE L1 -6057 404 2 1744 190 36 22 chr3 193448283 193448641 -24588517 - MLT1A1 LTR MaLR 0 365 3 21 0 0 0 chr3 193450398 193450419 -24586739 + AT_rich Low_complexity Low_complexity 1 21 0 439 302 63 24 chr3 193450674 193450879 -24586279 + MIR SINE MIR 20 232 -30 358 318 80 0 chr3 193451055 193451206 -24585952 + MIR3 SINE MIR 30 192 -16 1526 178 56 4 chr3 193451281 193451551 -24585607 - AluJo SINE Alu -28 284 1 477 210 29 7 chr3 193453698 193453836 -24583322 - L1M3c LINE L1 -3608 3957 3817 243 120 40 0 chr3 193453866 193453916 -24583242 + L1 LINE L1 2339 2390 -3756 323 175 56 16 chr3 193453916 193454042 -24583116 + (TA)n Simple_repeat Simple_repeat 2 132 0 2230 243 52 42 chr3 193454069 193454698 -24582460 - L1 LINE L1 -3741 3824 3203 2091 130 0 3 chr3 193454698 193454983 -24582175 - AluSg SINE Alu -21 289 6 2230 243 52 42 chr3 193454983 193455579 -24581579 - L1 LINE L1 -4362 3203 2578 599 165 18 0 chr3 193455585 193455694 -24581464 - MER44D DNA MER2_type -6 699 589 4276 208 76 125 chr3 193455694 193457538 -24579620 - MER52A LTR ERV1 0 1755 3 681 121 207 81 chr3 193457539 193457737 -24579421 - MER44D DNA MER2_type -112 497 5 2900 240 47 14 chr3 193457741 193459209 -24577949 - L1M3c LINE L1 -4575 2921 1357 367 204 105 53 chr3 193459420 193459572 -24577586 + MER103 DNA DNA 7 166 0 927 142 45 7 chr3 193460076 193460231 -24576927 + FRAM SINE Alu 5 165 -1 257 302 13 44 chr3 193460239 193460390 -24576768 - MIR SINE MIR -57 205 1 22 0 0 0 chr3 193460527 193460549 -24576609 + AT_rich Low_complexity Low_complexity 1 22 0 280 312 0 0 chr3 193461252 193461329 -24575829 - MIR SINE MIR -110 152 76 1834 99 4 15 chr3 193461650 193461913 -24575245 + AluSc SINE Alu 35 294 -15 276 203 0 16 chr3 193462019 193462083 -24575075 - LTR33A LTR ERVL -15 508 446 555 238 5 60 chr3 193462621 193462806 -24574352 - MER104 DNA Tc2 -5 175 1 374 0 0 21 chr3 193463201 193463248 -24573910 + (TCTCCC)n Simple_repeat Simple_repeat 4 49 0 7235 49 8 9 chr3 193463248 193464758 -24572400 + SVA Other Other 54 1405 0 281 217 0 0 chr3 193465068 193465114 -24572044 - L2 LINE L2 -15 3298 3253 195 337 105 11 chr3 193465823 193465918 -24571240 - MIR SINE MIR -76 132 29 354 348 96 5 chr3 193465938 193466125 -24571033 + MIR SINE MIR 5 208 -54 201 178 22 0 chr3 193466872 193466917 -24570241 + (TG)n Simple_repeat Simple_repeat 2 47 0 2295 77 3 10 chr3 193467510 193467810 -24569348 - AluY SINE Alu -13 298 1 185 343 210 3 chr3 193468130 193468477 -24568681 - L2 LINE L2 -343 2971 2553 243 0 0 0 chr3 193469191 193469218 -24567940 + (T)n Simple_repeat Simple_repeat 1 27 0 237 354 76 42 chr3 193469960 193470384 -24566774 - L2 LINE L2 -215 3057 2620 246 298 135 39 chr3 193470855 193470959 -24566199 - L2 LINE L2 -17 3255 3142 2152 117 0 0 chr3 193471108 193471413 -24565745 - AluSx SINE Alu 0 306 2 210 71 0 0 chr3 193472066 193472094 -24565064 + (T)n Simple_repeat Simple_repeat 1 28 0 999 198 6 0 chr3 193472139 193472316 -24564842 + MER5B DNA MER1_type 1 178 0 201 379 35 44 chr3 193473221 193473424 -24563734 + L2 LINE L2 3070 3270 -2 505 209 152 6 chr3 193473729 193473887 -24563271 + MER96B DNA MER1_type? 2 182 -235 228 280 62 49 chr3 193474516 193474759 -24562399 + L1ME LINE L1 5577 5822 -299 2128 116 3 0 chr3 193474767 193475051 -24562107 + AluSx SINE Alu 1 285 -27 539 244 167 6 chr3 193475110 193475266 -24561892 + MER5A DNA MER1_type 9 189 0 180 0 0 0 chr3 193475830 193475850 -24561308 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1768 175 3 16 chr3 193476026 193476335 -24560823 - AluJo SINE Alu 0 312 8 394 290 175 22 chr3 193476940 193477123 -24560035 - MIR SINE MIR -50 212 2 285 333 95 8 chr3 193477215 193477341 -24559817 - MER5A DNA MER1_type -6 183 47 233 347 89 16 chr3 193477231 193477355 -24559803 + MER5A DNA MER1_type 36 168 -21 * 862 117 197 21 chr3 193477944 193478129 -24559029 - Tigger3(Golem) DNA MER2_type -47 2982 2765 425 167 0 0 chr3 193478129 193478207 -24558951 - MADE1 DNA Mariner 0 80 3 451 173 0 0 chr3 193478210 193478285 -24558873 - Tigger3(Golem) DNA MER2_type -2954 75 1 3660 60 0 4 chr3 193478345 193478812 -24558346 - L1PA7 LINE L1 -3 6151 5687 1256 187 21 21 chr3 193478893 193479182 -24557976 + SVA Other Other 432 720 -666 288 0 0 0 chr3 193479288 193479320 -24557838 + (TG)n Simple_repeat Simple_repeat 1 32 0 27744 119 30 33 chr3 193479320 193484771 -24552387 - L1P3 LINE L1 -460 7132 473 207 0 0 0 chr3 193485114 193485137 -24552021 + (A)n Simple_repeat Simple_repeat 1 23 0 203 242 76 115 chr3 193485770 193485927 -24551231 - MIR SINE MIR -13 249 99 203 346 56 0 chr3 193485956 193486063 -24551095 + MIR SINE MIR 39 151 -57 2199 114 7 0 chr3 193486063 193486361 -24550797 + AluSp SINE Alu 1 300 -13 22 56 0 0 chr3 193487827 193487863 -24549295 + AT_rich Low_complexity Low_complexity 1 36 0 2151 74 21 89 chr3 193488174 193488512 -24548646 - AluYb8 SINE Alu -3 315 1 197 119 24 0 chr3 193488514 193488556 -24548602 + CT-rich Low_complexity Low_complexity 1 43 0 243 0 0 0 chr3 193489904 193489931 -24547227 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 366 259 128 72 chr3 193490149 193490400 -24546758 + MLT1L LTR MaLR 3 267 -348 2332 96 3 3 chr3 193490411 193490714 -24546444 + AluSx SINE Alu 1 303 -9 961 174 181 4 chr3 193492036 193492121 -24545037 + MER33 DNA MER1_type 12 81 -2504 276 30 0 0 chr3 193492121 193492154 -24545004 + (CA)n Simple_repeat Simple_repeat 2 34 0 961 174 181 4 chr3 193492154 193492333 -24544825 + MER33 DNA MER1_type 81 323 -1 224 242 273 23 chr3 193492351 193492483 -24544675 + MER5A DNA MER1_type 11 175 -14 574 249 231 9 chr3 193492521 193492750 -24544408 + MER5C DNA MER1_type 45 324 0 1621 203 36 61 chr3 193494132 193494711 -24542447 + MER67B LTR ERV1 5 432 -82 365 372 21 29 chr3 193494831 193495070 -24542088 + L2 LINE L2 2728 2964 -350 526 285 70 48 chr3 193495086 193495314 -24541844 - MIR SINE MIR -8 254 22 24 0 0 0 chr3 193495733 193495757 -24541401 + AT_rich Low_complexity Low_complexity 1 24 0 813 263 24 0 chr3 193496448 193496653 -24540505 + MER63A DNA MER1_type 1 210 0 341 338 70 28 chr3 193497964 193498144 -24539014 - MIR3 SINE MIR -15 193 4 36 23 0 0 chr3 193498260 193498303 -24538855 + AT_rich Low_complexity Low_complexity 1 43 0 391 373 37 0 chr3 193498419 193498553 -24538605 - L2 LINE L2 -32 3240 3102 980 238 58 67 chr3 193498604 193499036 -24538122 - MLT1F1 LTR MaLR 0 567 140 231 114 0 0 chr3 193499285 193499320 -24537838 + (TG)n Simple_repeat Simple_repeat 1 35 0 618 259 138 11 chr3 193499582 193499965 -24537193 - MLT1L LTR MaLR -2 613 141 479 300 75 0 chr3 193502014 193502177 -24534981 - MIR SINE MIR -74 188 16 320 293 100 21 chr3 193502829 193502969 -24534189 - MIR SINE MIR -12 250 100 2082 124 24 13 chr3 193503444 193503742 -24533416 - AluSx SINE Alu -11 301 1 247 294 9 28 chr3 193503910 193504019 -24533139 - L1MC4a LINE L1 -1847 5961 5855 2015 121 23 20 chr3 193504594 193504899 -24532259 - AluSg SINE Alu -1 309 4 761 267 67 85 chr3 193505350 193505830 -24531328 + L2 LINE L2 2834 3304 -9 410 254 57 16 chr3 193505856 193505978 -24531180 + L2 LINE L2 3187 3313 0 233 280 0 0 chr3 193506083 193506133 -24531025 + (CAA)n Simple_repeat Simple_repeat 3 52 0 214 375 77 0 chr3 193506231 193506335 -24530823 - MIR SINE MIR -62 146 35 495 300 64 32 chr3 193506758 193507008 -24530150 - L2 LINE L2 0 3313 3056 1978 107 0 0 chr3 193508262 193508532 -24528626 - AluSq SINE Alu -11 302 33 4461 148 62 48 chr3 193508698 193509368 -24527790 - L1PA16 LINE L1 0 6166 5462 2127 147 0 3 chr3 193509368 193509680 -24527478 + AluSx SINE Alu 2 312 0 4461 148 62 48 chr3 193509680 193510302 -24526856 - L1PA16 LINE L1 -704 5462 4850 1632 164 19 0 chr3 193511586 193511848 -24525310 + AluJb SINE Alu 1 267 -45 444 246 91 17 chr3 193511882 193512047 -24525111 - MIR SINE MIR -66 142 2 359 198 41 50 chr3 193512073 193512194 -24524964 - L1MC4 LINE L1 -1 8041 7922 23 101 0 0 chr3 193512221 193512300 -24524858 + AT_rich Low_complexity Low_complexity 1 79 0 2935 246 33 72 chr3 193512306 193512679 -24524479 - L1MC4 LINE L1 -143 7899 7513 2136 66 0 18 chr3 193512679 193512951 -24524207 + AluY SINE Alu 41 307 -4 2935 246 33 72 chr3 193512951 193513114 -24524044 - L1MC4 LINE L1 -529 7513 7345 2064 140 0 7 chr3 193513114 193513406 -24523752 + AluSx SINE Alu 2 291 -21 2935 246 33 72 chr3 193513406 193514159 -24522999 - L1MC4 LINE L1 -697 7345 6659 256 325 0 0 chr3 193514167 193514244 -24522914 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 340 230 100 115 chr3 193515069 193515301 -24521857 + MIR3 SINE MIR 2 251 -11 332 329 51 7 chr3 193516244 193516381 -24520777 + MIR3 SINE MIR 4 146 -62 1888 180 61 54 chr3 193516491 193517064 -24520094 - MER69 DNA AcHobo -13 2513 1937 268 272 132 76 chr3 193517083 193517416 -24519742 + L2 LINE L2 2843 3200 -72 347 353 27 54 chr3 193518108 193518369 -24518789 - L2 LINE L2 -171 3101 2848 207 310 155 8 chr3 193518711 193518840 -24518318 - MIR SINE MIR -95 167 20 2346 235 20 32 chr3 193519066 193519822 -24517336 - L1MEc LINE L1 -3136 3404 2658 320 267 20 0 chr3 193519957 193520058 -24517100 - L1MEc LINE L1 -4647 2074 1972 676 135 48 0 chr3 193520152 193520278 -24516880 + L1MA6 LINE L1 6145 6276 -24 348 247 147 68 chr3 193520275 193520301 -24516857 - L1MEc LINE L1 -4613 1968 1945 * 2260 156 57 57 chr3 193520301 193520806 -24516352 - MLT1D LTR MaLR 0 505 1 348 247 147 68 chr3 193520806 193521147 -24516011 - L1MEc LINE L1 -4636 1945 1531 298 294 110 13 chr3 193521188 193521416 -24515742 - L1MEc LINE L1 -6110 611 362 186 299 201 21 chr3 193522041 193522185 -24514973 + MIR SINE MIR 21 190 -72 641 215 0 30 chr3 193522430 193522565 -24514593 + FLAM_A SINE Alu 1 131 -2 230 0 33 0 chr3 193523713 193523743 -24513415 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8833 100 86 32 chr3 193524228 193524655 -24512503 + pTR5 LTR ERV1 741 1143 -1295 195 42 0 0 chr3 193524655 193524679 -24512479 + (CCCCCG)n Simple_repeat Simple_repeat 1 24 0 8833 100 86 32 chr3 193524679 193525861 -24511297 + pTR5 LTR ERV1 1143 2438 0 1257 236 59 54 chr3 193526791 193527519 -24509639 + L1ME3 LINE L1 5464 6161 -5 297 328 46 0 chr3 193527931 193528105 -24509053 + HERVL LTR ERVL 3741 3922 -1732 2021 106 7 7 chr3 193528166 193528448 -24508710 - AluSq SINE Alu -6 307 26 405 265 23 38 chr3 193528988 193529120 -24508038 + GA-rich Low_complexity Low_complexity 5 134 0 230 363 0 12 chr3 193529475 193529555 -24507603 - MIR SINE MIR -164 98 20 335 265 31 31 chr3 193530384 193530482 -24506676 + MER5A DNA MER1_type 15 112 -77 22 35 0 0 chr3 193530721 193530750 -24506408 + AT_rich Low_complexity Low_complexity 1 29 0 402 235 139 0 chr3 193530829 193530944 -24506214 + MIR SINE MIR 124 254 -8 416 336 70 8 chr3 193532309 193532525 -24504633 - MIR SINE MIR -6 256 30 267 320 39 0 chr3 193534573 193534651 -24502507 + L2 LINE L2 3183 3263 -50 313 375 29 7 chr3 193535859 193535995 -24501163 + MIR SINE MIR 57 195 -67 892 231 56 16 chr3 193536711 193536962 -24500196 - MIR SINE MIR 0 262 2 264 273 152 30 chr3 193537454 193537553 -24499605 + L2 LINE L2 3201 3311 -2 28 50 0 17 chr3 193538914 193538945 -24498213 + AT_rich Low_complexity Low_complexity 1 32 -27 1732 167 14 0 chr3 193538945 193539232 -24497926 + AluJo SINE Alu 1 291 -21 28 50 0 17 chr3 193539232 193539260 -24497898 + AT_rich Low_complexity Low_complexity 32 59 0 25379 142 28 53 chr3 193539453 193545778 -24491380 - L1PA8 LINE L1 -1 6171 12 2269 275 33 16 chr3 193545826 193546936 -24490222 - L1M4 LINE L1 -2577 3569 2441 4701 245 88 63 chr3 193546945 193550347 -24486811 + L1M3b LINE L1 1 3158 -3192 11969 153 25 11 chr3 193550348 193551556 -24485602 + L1P3 LINE L1 1 1191 -5270 195 100 0 0 chr3 193551556 193551586 -24485572 + (CAA)n Simple_repeat Simple_repeat 3 32 0 11969 153 25 11 chr3 193551586 193554267 -24482891 + L1P3 LINE L1 1191 3986 -2475 394 259 209 19 chr3 193555186 193555344 -24481814 - MIR SINE MIR -6 256 69 274 344 73 0 chr3 193555488 193555639 -24481519 + MIR SINE MIR 63 224 -38 21 0 0 0 chr3 193555645 193555666 -24481492 + AT_rich Low_complexity Low_complexity 1 21 0 544 279 142 5 chr3 193555686 193555890 -24481268 + MIR SINE MIR 30 261 -1 1296 87 5 0 chr3 193556432 193556617 -24480541 - L1PA7 LINE L1 0 6154 5969 526 273 86 30 chr3 193557688 193557886 -24479272 - MIR SINE MIR -48 214 6 342 283 43 7 chr3 193559176 193559314 -24477844 + L1ME4a LINE L1 5964 6106 -15 24 0 0 0 chr3 193560326 193560350 -24476808 + AT_rich Low_complexity Low_complexity 1 24 0 180 77 0 0 chr3 193561566 193561592 -24475566 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2242 285 86 22 chr3 193562143 193563226 -24473932 + L2 LINE L2 2177 3311 -2 233 260 26 0 chr3 193563231 193563308 -24473850 + HAL1b LINE L1 1222 1300 -48 * 5649 151 52 5 chr3 193563303 193564399 -24472759 - L1MC1 LINE L1 0 6333 5188 313 321 136 7 chr3 193565217 193565357 -24471801 + MIR SINE MIR 91 248 -14 1874 157 74 0 chr3 193566381 193566705 -24470453 + MER7A DNA MER2_type 1 346 0 358 188 240 0 chr3 193567230 193567326 -24469832 - MIR3 SINE MIR -7 201 83 330 338 70 40 chr3 193567457 193567658 -24469500 - MIR SINE MIR -36 226 20 1389 291 128 9 chr3 193568485 193569014 -24468144 - MLT1G1 LTR MaLR -3 592 1 419 309 17 111 chr3 193569860 193570158 -24467000 + L2 LINE L2 3000 3269 -3 460 303 90 28 chr3 193570563 193570741 -24466417 - MIR3 SINE MIR -11 197 9 24 0 0 0 chr3 193570829 193570853 -24466305 + AT_rich Low_complexity Low_complexity 1 24 0 196 330 64 0 chr3 193571904 193571998 -24465160 + L2 LINE L2 3172 3271 -1 1196 173 18 0 chr3 193573078 193573303 -24463855 - L1MD3 LINE L1 -13 7982 7754 388 237 76 8 chr3 193573373 193573491 -24463667 + L2 LINE L2 3187 3312 -1 280 352 77 28 chr3 193574820 193575067 -24462091 + L2 LINE L2 2709 2967 -347 228 86 0 0 chr3 193575164 193575199 -24461959 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 443 292 8 8 chr3 193575207 193575337 -24461821 + L2 LINE L2 3184 3313 0 21 57 0 0 chr3 193576903 193576938 -24460220 + AT_rich Low_complexity Low_complexity 1 35 0 305 109 18 0 chr3 193577691 193577746 -24459412 + (CA)n Simple_repeat Simple_repeat 1 56 0 272 305 78 23 chr3 193577950 193578078 -24459080 + MIR3 SINE MIR 70 204 -4 200 308 15 0 chr3 193578244 193578309 -24458849 + MIR SINE MIR 82 147 -61 194 171 0 0 chr3 193578676 193578711 -24458447 + L2 LINE L2 3266 3300 -13 1686 128 0 8 chr3 193579858 193580127 -24457031 - AluSx SINE Alu 0 310 44 273 29 0 0 chr3 193580997 193581031 -24456127 + (TA)n Simple_repeat Simple_repeat 2 35 0 1418 181 55 71 chr3 193581047 193581523 -24455635 - LTR37B LTR ERV1 0 468 1 195 222 0 0 chr3 193582580 193582625 -24454533 + GA-rich Low_complexity Low_complexity 3 47 0 557 157 9 0 chr3 193584017 193584132 -24453026 + CT-rich Low_complexity Low_complexity 2 117 0 2376 112 3 0 chr3 193584227 193584539 -24452619 + AluSp SINE Alu 1 313 0 2176 102 150 5 chr3 193585318 193585692 -24451466 + MSTA LTR MaLR 1 428 0 890 169 44 36 chr3 193585865 193586090 -24451068 - AluJo SINE Alu -44 268 42 26 50 0 0 chr3 193586537 193586577 -24450581 + AT_rich Low_complexity Low_complexity 1 40 0 1135 48 7 28 chr3 193587175 193587320 -24449838 + AluYb8 SINE Alu 2 143 -175 273 0 0 0 chr3 193587320 193587360 -24449798 + AluY SINE Alu 260 299 0 1945 246 85 49 chr3 193587394 193588071 -24449087 - L1M4 LINE L1 -1492 4654 3934 324 0 0 0 chr3 193588071 193588107 -24449051 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 1945 246 85 49 chr3 193588107 193588346 -24448812 - L1M4 LINE L1 -2212 3934 3705 1129 188 107 69 chr3 193588640 193588986 -24448172 + L1ME2 LINE L1 5797 6155 -9 2027 120 0 0 chr3 193589092 193589375 -24447783 + AluSg SINE Alu 26 308 -2 2134 96 3 3 chr3 193641137 193641475 -24395683 - AluY SINE Alu 0 338 1 1336 140 5 0 chr3 193641476 193641669 -24395489 + AluSg/x SINE Alu 104 297 -15 283 183 98 12 chr3 193642416 193642498 -24394660 + MIR SINE MIR 63 151 -111 198 0 0 0 chr3 193642652 193642674 -24394484 + (TAA)n Simple_repeat Simple_repeat 3 24 0 189 211 0 0 chr3 193643794 193643846 -24393312 + A-rich Low_complexity Low_complexity 1 52 0 199 237 26 53 chr3 193644033 193644109 -24393049 + L2 LINE L2 2334 2407 -907 2543 64 3 10 chr3 193644117 193644429 -24392729 - AluY SINE Alu -1 310 1 2870 149 8 38 chr3 193644842 193645250 -24391908 + MER31A LTR ERV1 1 393 -92 2426 81 3 0 chr3 193645250 193645557 -24391601 - AluSp SINE Alu -5 308 1 2870 149 8 38 chr3 193645557 193645646 -24391512 + MER31A LTR ERV1 393 483 -2 378 0 0 0 chr3 193645913 193645955 -24391203 + (CA)n Simple_repeat Simple_repeat 2 43 0 342 244 76 25 chr3 193648781 193648900 -24388258 + MIR SINE MIR 111 235 -27 687 65 0 0 chr3 193649625 193649718 -24387440 + (TAGA)n Simple_repeat Simple_repeat 3 95 0 343 351 33 13 chr3 193650202 193650353 -24386805 + L2 LINE L2 3114 3267 -5 229 152 0 43 chr3 193650428 193650474 -24386684 + MER5B DNA MER1_type 22 65 -113 188 218 91 18 chr3 193650432 193650487 -24386671 - MER5A DNA MER1_type -25 164 106 * 2458 230 110 70 chr3 193650898 193651363 -24385795 + L1MEc LINE L1 45 490 -5906 1434 173 14 0 chr3 193651363 193651583 -24385575 + MER58A DNA MER1_type 1 223 -1 2458 230 110 70 chr3 193651583 193652046 -24385112 + L1MEc LINE L1 490 1010 -5386 5777 70 1 8 chr3 193652050 193652768 -24384390 + L1PA8A LINE L1 5419 6131 0 8144 140 12 8 chr3 193652878 193653020 -24384138 - HSMAR2 DNA Mariner -1 1301 1161 2464 72 0 3 chr3 193653020 193653325 -24383833 + AluY SINE Alu 1 304 -7 8144 140 12 8 chr3 193653325 193654470 -24382688 - HSMAR2 DNA Mariner -141 1161 8 1781 116 34 4 chr3 193654465 193654732 -24382426 - HSMAR2 DNA Mariner -338 964 690 * 351 313 44 6 chr3 193654759 193654919 -24382239 + L1MEc LINE L1 1924 2089 -4307 619 251 79 73 chr3 193654942 193655222 -24381936 - L1MCc LINE L1 -4889 1534 1286 2243 127 0 0 chr3 193655222 193655530 -24381628 + AluSg SINE Alu 1 308 -2 619 251 79 73 chr3 193655530 193655690 -24381468 - L1MCc LINE L1 -5137 1286 1129 2133 137 0 23 chr3 193656264 193656571 -24380587 + AluJo SINE Alu 1 300 -12 32 0 0 0 chr3 193656633 193656665 -24380493 + AT_rich Low_complexity Low_complexity 1 32 0 182 128 26 0 chr3 193656977 193657016 -24380142 + (CA)n Simple_repeat Simple_repeat 1 40 0 227 350 126 0 chr3 193657026 193657129 -24380029 - MIR3 SINE MIR -78 130 15 723 272 51 10 chr3 193657986 193658181 -24378977 - MIR SINE MIR -48 214 12 243 238 138 25 chr3 193659760 193659840 -24377318 + MIR SINE MIR 32 120 -88 245 259 17 0 chr3 193659964 193660022 -24377136 - L2 LINE L2 -4 3268 3210 1790 149 3 3 chr3 193660048 193660356 -24376802 + AluJb SINE Alu 1 308 0 2375 89 0 34 chr3 193660592 193660916 -24376242 + AluSq SINE Alu 1 313 0 406 271 139 0 chr3 193660950 193661072 -24376086 + MIR3 SINE MIR 27 165 -43 720 130 188 143 chr3 193661138 193661446 -24375712 + MER33 DNA MER1_type 3 324 0 554 308 43 24 chr3 193661995 193662206 -24374952 - MIR SINE MIR -43 219 5 2319 112 0 0 chr3 193663598 193663901 -24373257 + AluSx SINE Alu 1 303 -9 506 295 133 37 chr3 193664093 193664419 -24372739 - L2 LINE L2 0 3313 3020 2557 30 3 0 chr3 193664419 193664714 -24372444 + AluY SINE Alu 1 296 -15 506 295 133 37 chr3 193664714 193665128 -24372030 - L2 LINE L2 -293 3020 2449 213 211 0 0 chr3 193665428 193665480 -24371678 + (TTG)n Simple_repeat Simple_repeat 2 53 0 397 282 112 21 chr3 193666594 193666782 -24370376 + MIR SINE MIR 48 252 -10 1628 112 0 5 chr3 193667723 193668002 -24369156 + AluSq SINE Alu 63 340 0 328 261 72 9 chr3 193668204 193668315 -24368843 - MER5A DNA MER1_type -65 124 7 27 29 0 0 chr3 193670756 193670790 -24366368 + AT_rich Low_complexity Low_complexity 1 34 0 1852 227 62 52 chr3 193670830 193671345 -24365813 + MLT2B1 LTR ERVL 1 520 0 319 295 26 0 chr3 193671580 193671658 -24365500 - L2 LINE L2 0 3313 3234 289 346 113 39 chr3 193671758 193672165 -24364993 - L2 LINE L2 -420 2894 2458 188 318 73 45 chr3 193672169 193672279 -24364879 + MIR SINE MIR 100 212 -50 8709 108 5 12 chr3 193673678 193674969 -24362189 + HSMAR1 DNA Mariner 6 1287 0 2089 125 0 10 chr3 193675002 193675305 -24361853 - AluY SINE Alu -11 300 1 1060 109 23 11 chr3 193675309 193675483 -24361675 - L1MA2 LINE L1 0 6304 6129 5465 78 20 9 chr3 193675498 193676294 -24360864 - L1MA1 LINE L1 -125 6177 5373 4703 168 7 19 chr3 193676347 193677682 -24359476 + L1PA16 LINE L1 4773 6098 -68 198 171 0 0 chr3 193677717 193677752 -24359406 + MIR3 SINE MIR 171 205 -3 438 20 0 0 chr3 193678878 193678929 -24358229 + (CA)n Simple_repeat Simple_repeat 2 52 0 6386 156 46 10 chr3 193679661 193680848 -24356310 + Tigger3b DNA MER2_type 1 1230 -1 730 189 15 92 chr3 193681030 193681236 -24355922 + MER58A DNA MER1_type 35 224 0 338 280 86 40 chr3 193681244 193681419 -24355739 + MER5A DNA MER1_type 1 183 -6 844 229 12 0 chr3 193681925 193682091 -24355067 - MER5A DNA MER1_type -5 184 17 277 323 39 71 chr3 193682273 193682428 -24354730 - MIR3 SINE MIR -1 207 58 222 118 0 0 chr3 193683125 193683159 -24353999 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 558 0 0 0 chr3 193686346 193686408 -24350750 + (CA)n Simple_repeat Simple_repeat 1 62 0 698 299 9 23 chr3 193687001 193687218 -24349940 + MIR SINE MIR 41 254 -8 366 284 177 7 chr3 193688416 193688557 -24348601 + MIR SINE MIR 2 166 -96 462 291 87 0 chr3 193691415 193691621 -24345537 - MLT1J2 LTR MaLR -11 439 216 257 212 35 24 chr3 193691822 193691907 -24345251 + GA-rich Low_complexity Low_complexity 3 88 0 447 326 68 0 chr3 193692625 193692757 -24344401 + L2 LINE L2 3132 3272 0 26 0 0 0 chr3 193693014 193693040 -24344118 + AT_rich Low_complexity Low_complexity 1 26 0 255 203 0 0 chr3 193694151 193694210 -24342948 + (TA)n Simple_repeat Simple_repeat 1 59 0 306 73 0 0 chr3 193695541 193695582 -24341576 + (TG)n Simple_repeat Simple_repeat 1 41 0 262 213 12 12 chr3 193695614 193695694 -24341464 + (TATATG)n Simple_repeat Simple_repeat 2 81 0 525 333 12 12 chr3 193695805 193695976 -24341182 + MIR SINE MIR 6 176 -86 338 270 86 20 chr3 193697642 193697794 -24339364 + L1ME4a LINE L1 5956 6117 -4 221 362 86 24 chr3 193697872 193698082 -24339076 - MIR SINE MIR -35 227 5 2205 122 3 0 chr3 193698198 193698501 -24338657 + AluSx SINE Alu 1 304 -8 681 293 61 0 chr3 193699062 193699243 -24337915 - MER91A DNA MER1_type -4 192 1 238 229 145 12 chr3 193699438 193699521 -24337637 + MIR SINE MIR 163 256 -6 1476 157 0 24 chr3 193701534 193701782 -24335376 - AluJo SINE Alu -70 242 1 358 250 62 18 chr3 193702223 193702335 -24334823 + L2 LINE L2 3187 3303 -10 240 35 0 0 chr3 193702335 193702364 -24334794 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 3442 53 2 11 chr3 193702436 193702888 -24334270 + LTR7 LTR ERV1 1 448 -2 1409 103 9 0 chr3 193702890 193703113 -24334045 + HERVH LTR ERV1 1 225 -7488 * 15019 89 10 7 chr3 193703094 193705389 -24331769 + HERVH LTR ERV1 437 2987 -4726 803 151 20 0 chr3 193705385 193705531 -24331627 + HERVH LTR ERV1 3142 3290 -4423 * 3154 115 4 6 chr3 193705521 193706024 -24331134 + HERVH LTR ERV1 3492 3993 -3720 4186 139 0 1 chr3 193706026 193706689 -24330469 + HERVH LTR ERV1 4488 5149 -2564 1330 125 19 0 chr3 193706690 193706906 -24330252 + HERVH LTR ERV1 5600 5819 -1894 2390 87 40 13 chr3 193706906 193707286 -24329872 + HERVH LTR ERV1 7324 7713 0 3242 66 9 18 chr3 193707286 193707738 -24329420 + LTR7 LTR ERV1 1 448 -2 235 282 14 56 chr3 193707933 193708004 -24329154 - L2 LINE L2 -188 3084 3017 205 191 0 0 chr3 193708108 193708150 -24329008 + A-rich Low_complexity Low_complexity 1 42 0 39682 39 32 2 chr3 193708253 193714206 -24322952 + L1PA4 LINE L1 12 6152 -3 209 245 102 0 chr3 193716563 193716612 -24320546 + L2 LINE L2 3168 3221 -51 416 307 9 0 chr3 193716812 193716926 -24320232 - MIR3 SINE MIR -51 157 43 535 122 32 24 chr3 193718531 193718654 -24318504 + GA-rich Low_complexity Low_complexity 1 124 0 2866 164 91 28 chr3 193718659 193719330 -24317828 + L1MC3 LINE L1 7073 7785 0 2849 89 2 21 chr3 193719412 193719841 -24317317 - L1PA13 LINE L1 -438 5723 5303 2587 144 11 2 chr3 193719860 193720296 -24316862 + L1PA13 LINE L1 5724 6163 0 375 261 108 0 chr3 193722061 193722191 -24314967 - MIR SINE MIR 0 262 119 684 219 24 37 chr3 193722322 193722486 -24314672 - MIR SINE MIR -30 232 71 662 282 199 33 chr3 193722637 193722974 -24314184 - L2 LINE L2 0 3313 2921 230 319 132 0 chr3 193724695 193724786 -24312372 - L2 LINE L2 -2 3270 3168 630 344 107 35 chr3 193726472 193727242 -24309916 - L3 LINE CR1 -359 1218 394 385 331 80 44 chr3 193727357 193727632 -24309526 - L2 LINE L2 -339 2975 2691 299 263 26 0 chr3 193727649 193727725 -24309433 + L3 LINE CR1 1499 1576 -1 231 88 0 0 chr3 193727824 193727858 -24309300 + (TG)n Simple_repeat Simple_repeat 1 34 0 219 69 0 0 chr3 193727919 193727948 -24309210 + (TG)n Simple_repeat Simple_repeat 2 30 0 219 69 0 0 chr3 193728014 193728043 -24309115 + (TG)n Simple_repeat Simple_repeat 2 30 0 219 69 0 0 chr3 193728109 193728138 -24309020 + (TG)n Simple_repeat Simple_repeat 2 30 0 339 85 0 0 chr3 193728204 193728251 -24308907 + (TG)n Simple_repeat Simple_repeat 2 48 0 216 97 0 0 chr3 193728316 193728347 -24308811 + (TG)n Simple_repeat Simple_repeat 2 32 0 1493 206 32 30 chr3 193728656 193729123 -24308035 + LTR37B LTR ERV1 1 468 0 212 276 0 0 chr3 193729223 193729281 -24307877 + T-rich Low_complexity Low_complexity 1 58 0 * 227 98 0 59 chr3 193729239 193729290 -24307868 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 2397 80 0 16 chr3 193730080 193730393 -24306765 - AluSc SINE Alu -1 308 1 914 138 94 0 chr3 193732369 193732550 -24304608 + L1PB1 LINE L1 3 200 -6663 * 13877 151 57 6 chr3 193732542 193734982 -24302176 + L1PB1 LINE L1 625 2940 -3927 1478 130 14 0 chr3 193734982 193735189 -24301969 + AluSg/x SINE Alu 85 294 -18 13877 151 57 6 chr3 193735189 193738335 -24298823 + L1PB1 LINE L1 2940 6539 -328 771 11 0 0 chr3 193738335 193738423 -24298735 + (CATATA)n Simple_repeat Simple_repeat 1 88 0 13877 151 57 6 chr3 193738423 193738769 -24298389 + L1PB1 LINE L1 6539 6866 -1 2124 148 9 3 chr3 193739205 193739550 -24297608 + MER7A DNA MER2_type 1 345 -1 2045 80 98 0 chr3 193740564 193740838 -24296320 - AluSq SINE Alu -12 301 1 1680 99 159 4 chr3 193741770 193742022 -24295136 + AluSc SINE Alu 1 291 -8 395 266 102 21 chr3 193742751 193742769 -24294389 + MIR SINE MIR 58 73 -189 2109 104 21 0 chr3 193742769 193743087 -24294071 - AluSq SINE Alu 0 324 1 395 266 102 21 chr3 193743087 193743256 -24293902 + MIR SINE MIR 73 249 -13 302 196 31 103 chr3 193743358 193743455 -24293703 + L2 LINE L2 3168 3257 -15 239 224 0 30 chr3 193743474 193743541 -24293617 - L1MC4a LINE L1 -67 7741 7677 2529 108 5 19 chr3 193745099 193745468 -24291690 + THE1B LTR MaLR 1 364 0 2537 132 14 29 chr3 193747028 193747403 -24289755 + MLT2D LTR ERVL 4 374 -40 405 39 0 0 chr3 193747403 193747454 -24289704 + (CA)n Simple_repeat Simple_repeat 2 52 0 2537 132 14 29 chr3 193747454 193747495 -24289663 + MLT2D LTR ERVL 374 414 0 1817 52 0 0 chr3 193747557 193747787 -24289371 + L1PA12 LINE L1 5939 6168 0 355 299 7 51 chr3 193748124 193748261 -24288897 + MIR SINE MIR 3 133 -129 713 316 101 11 chr3 193748520 193748896 -24288262 - MLT1J2 LTR MaLR -19 431 22 573 272 168 5 chr3 193750587 193750778 -24286380 - MIR SINE MIR -6 256 35 771 250 81 30 chr3 193750791 193751030 -24286128 - MIR SINE MIR 0 262 19 303 302 155 19 chr3 193751080 193751610 -24285548 - L1MC5 LINE L1 -91 7870 7269 329 283 40 39 chr3 193751792 193752077 -24285081 - L1MC4 LINE L1 -773 7188 6960 221 332 109 21 chr3 193752198 193752391 -24284767 + MIR SINE MIR 47 256 -6 2355 100 0 0 chr3 193753437 193753746 -24283412 - AluSg SINE Alu -1 309 1 203 319 18 140 chr3 193754777 193755113 -24282045 - L2 LINE L2 -2 3270 2976 2035 106 22 0 chr3 193755269 193755544 -24281614 + AluSq SINE Alu 1 281 -32 195 42 0 0 chr3 193755546 193755570 -24281588 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 351 294 108 22 chr3 193756189 193756420 -24280738 + MARNA DNA Mariner 166 416 -170 471 88 4 10 chr3 193756496 193756566 -24280592 - MSTD LTR MaLR 0 396 341 2093 110 0 0 chr3 193756566 193756850 -24280308 + AluSx SINE Alu 1 284 -28 232 36 0 0 chr3 193756850 193756878 -24280280 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 471 88 4 10 chr3 193756878 193756892 -24280266 - MSTD LTR MaLR -55 341 328 1318 158 4 31 chr3 193756901 193757129 -24280029 - MSTD LTR MaLR -174 222 1 190 250 250 20 chr3 193757247 193757347 -24279811 + MIR SINE MIR 113 235 -27 225 250 0 0 chr3 193757430 193757482 -24279676 - MARNA DNA Mariner -42 544 493 1876 147 3 32 chr3 193757743 193758056 -24279102 + AluJo SINE Alu 6 309 -3 2216 177 42 0 chr3 193759186 193759570 -24277588 + MER93a LTR ERV1 3 402 0 543 200 118 18 chr3 193759896 193760066 -24277092 + MER5C DNA MER1_type 7 193 -131 231 255 0 0 chr3 193760087 193760134 -24277024 + A-rich Low_complexity Low_complexity 1 47 0 831 276 125 7 chr3 193760553 193760850 -24276308 - MER102b DNA MER1_type -1 340 9 2206 122 0 3 chr3 193761008 193761304 -24275854 + AluSx SINE Alu 6 300 -12 2865 177 42 72 chr3 193762922 193763104 -24274054 + MER4D LTR ERV1 1 187 -716 197 33 33 0 chr3 193763104 193763134 -24274024 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1681 174 0 7 chr3 193763136 193763406 -24273752 - AluJb SINE Alu -30 282 15 2865 177 42 72 chr3 193763406 193763905 -24273253 + MER4D LTR ERV1 188 665 -238 1325 185 0 13 chr3 193763959 193764191 -24272967 + MER4E LTR ERV1 550 778 -1 30 0 0 0 chr3 193764613 193764643 -24272515 + AT_rich Low_complexity Low_complexity 1 30 0 180 179 0 0 chr3 193765938 193765977 -24271181 + CT-rich Low_complexity Low_complexity 4 42 0 2348 105 0 0 chr3 193767087 193767393 -24269765 + AluSq SINE Alu 1 306 -7 2273 152 46 0 chr3 193767879 193768228 -24268930 - MLT1A1 LTR MaLR 0 365 1 233 225 0 0 chr3 193768283 193768323 -24268835 + L1ME3 LINE L1 6036 6075 -87 2186 79 0 14 chr3 193768784 193769074 -24268084 - AluSc SINE Alu -2 307 22 1498 161 75 18 chr3 193769359 193769639 -24267519 + AluSx SINE Alu 3 298 -14 363 23 0 0 chr3 193771031 193771075 -24266083 + (CA)n Simple_repeat Simple_repeat 2 45 0 2112 122 0 7 chr3 193771718 193772006 -24265152 + AluSx SINE Alu 1 286 -26 357 308 26 13 chr3 193772624 193772780 -24264378 - MIR SINE MIR -85 177 20 250 289 133 0 chr3 193774566 193774656 -24262502 + L2 LINE L2 3150 3251 -21 328 221 127 83 chr3 193777842 193778023 -24259135 - L2 LINE L2 -12 3301 3113 720 195 103 46 chr3 193779139 193779169 -24257989 + MER3 DNA MER1_type 4 31 -178 2529 162 63 4 chr3 193779169 193779627 -24257531 + MER31A LTR ERV1 1 485 0 720 195 103 46 chr3 193779627 193779791 -24257367 + MER3 DNA MER1_type 31 209 0 266 301 84 0 chr3 193779791 193779859 -24257299 + MLT1J2 LTR MaLR 254 328 -122 450 0 0 0 chr3 193779859 193779909 -24257249 + (A)n Simple_repeat Simple_repeat 1 50 0 426 237 20 99 chr3 193780007 193780076 -24257082 - MIR SINE MIR -99 163 111 2407 89 3 0 chr3 193780076 193780378 -24256780 + AluSp SINE Alu 1 303 -10 426 237 20 99 chr3 193780378 193780460 -24256698 - MIR SINE MIR -151 111 24 412 21 0 0 chr3 193780902 193780950 -24256208 + MADE1 DNA Mariner 1 48 -32 711 222 80 40 chr3 193781306 193781531 -24255627 - MIR SINE MIR -25 237 4 290 339 23 29 chr3 193782605 193782779 -24254379 + MIR3 SINE MIR 20 192 -16 2453 84 3 0 chr3 193782779 193783089 -24254069 - AluSq SINE Alu -2 311 1 245 224 216 80 chr3 193784005 193784130 -24253028 - MIR SINE MIR -68 194 53 212 240 80 13 chr3 193784744 193784819 -24252339 - MIR SINE MIR -64 198 119 342 0 0 0 chr3 193785275 193785313 -24251845 + (TG)n Simple_repeat Simple_repeat 2 39 0 280 238 16 0 chr3 193785391 193785454 -24251704 + L1ME4a LINE L1 5988 6051 -70 2506 144 58 22 chr3 193785488 193785899 -24251259 + MSTB LTR MaLR 1 426 0 2073 108 0 14 chr3 193786418 193786753 -24250405 - AluY SINE Alu 0 331 1 22 0 0 0 chr3 193786939 193786961 -24250197 + AT_rich Low_complexity Low_complexity 1 22 0 394 276 58 87 chr3 193787657 193787969 -24249189 - MLT1K LTR MaLR -90 498 196 2913 230 28 42 chr3 193788265 193788646 -24248512 - L1ME1 LINE L1 -3 6232 5847 1873 142 40 116 chr3 193788646 193789068 -24248090 + MLT1B LTR MaLR 1 390 0 2913 230 28 42 chr3 193789068 193789263 -24247895 - L1ME1 LINE L1 -388 5847 5651 212 0 36 0 chr3 193789263 193789291 -24247867 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2241 89 0 0 chr3 193789295 193789600 -24247558 + AluSx SINE Alu 1 305 0 2913 230 28 42 chr3 193789600 193789899 -24247259 - L1ME1 LINE L1 -587 5648 5366 * 6664 63 1 5 chr3 193789890 193790727 -24246431 - L1PA8 LINE L1 -4 6168 5335 2171 278 27 25 chr3 193790702 193791415 -24245743 - L1ME1 LINE L1 -5562 834 121 * 996 175 0 0 chr3 193791446 193791606 -24245552 + AluSg/x SINE Alu 137 296 -16 2115 128 0 14 chr3 193791766 193792062 -24245096 - AluSx SINE Alu -17 295 4 468 111 20 131 chr3 193792125 193792164 -24244994 - MER58C DNA MER1_type -2206 214 172 1741 149 87 0 chr3 193792164 193792439 -24244719 + AluSg SINE Alu 1 299 -11 468 111 20 131 chr3 193792439 193792498 -24244660 - MER58C DNA MER1_type -2248 172 127 24 0 0 0 chr3 193792509 193792533 -24244625 + AT_rich Low_complexity Low_complexity 1 24 0 1507 110 0 0 chr3 193792656 193792856 -24244302 + AluSg/x SINE Alu 95 294 -16 2115 128 0 14 chr3 193793016 193793312 -24243846 - AluSx SINE Alu -17 295 4 344 192 20 131 chr3 193793375 193793414 -24243744 - MER58C DNA MER1_type -2206 214 172 1653 156 87 4 chr3 193793414 193793690 -24243468 + AluSg SINE Alu 1 299 -11 344 192 20 131 chr3 193793690 193793749 -24243409 - MER58C DNA MER1_type -2248 172 127 314 299 86 46 chr3 193793857 193794031 -24243127 - MLT1J2 LTR MaLR -8 442 262 798 232 37 11 chr3 193794058 193794248 -24242910 - MLT1J2 LTR MaLR -247 203 9 790 204 8 0 chr3 193794781 193794913 -24242245 - FLAM_A SINE Alu 0 133 1 251 290 0 0 chr3 193795324 193795386 -24241772 + MER69 DNA AcHobo 2460 2521 -5 436 264 78 8 chr3 193795717 193795846 -24241312 + MIR3 SINE MIR 19 156 -52 187 174 109 22 chr3 193795878 193795924 -24241234 + L2 LINE L2 3194 3243 -70 2040 105 0 0 chr3 193796168 193796435 -24240723 - AluSx SINE Alu -13 299 33 22 35 0 0 chr3 193796639 193796668 -24240490 + AT_rich Low_complexity Low_complexity 1 29 0 227 195 0 0 chr3 193796681 193796722 -24240436 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 282 246 16 0 chr3 193797299 193797360 -24239798 - MER5A DNA MER1_type 0 189 128 770 310 103 20 chr3 193798438 193798828 -24238330 - L3 LINE CR1 -1 1576 1155 426 204 46 99 chr3 193798923 193799075 -24238083 + MER103 DNA DNA 4 147 -19 515 320 25 29 chr3 193799120 193799364 -24237794 + MIR SINE MIR 20 262 0 184 254 36 0 chr3 193799856 193799911 -24237247 + MIR SINE MIR 160 216 -46 330 264 202 16 chr3 193800077 193800206 -24236952 + MIR3 SINE MIR 54 206 -2 339 25 0 0 chr3 193800432 193800472 -24236686 + (TG)n Simple_repeat Simple_repeat 2 41 0 1013 150 27 16 chr3 193800565 193800752 -24236406 - MER53 DNA DNA 0 189 1 434 320 116 18 chr3 193801004 193801229 -24235929 + MIR SINE MIR 1 247 -15 2284 106 3 0 chr3 193801374 193801686 -24235472 + AluSp SINE Alu 1 313 0 1975 183 30 52 chr3 193803164 193803602 -24233556 + MSTC LTR MaLR 1 428 0 566 299 154 39 chr3 193803743 193804401 -24232757 + L2 LINE L2 2278 3006 -266 1651 186 52 109 chr3 193804569 193805064 -24232094 + MLT1C LTR MaLR 1 467 0 2079 100 3 24 chr3 193805799 193806136 -24231022 + AluSx SINE Alu 1 331 0 1811 139 18 18 chr3 193807758 193808039 -24229119 - MER1B DNA MER1_type -2 337 57 391 347 53 16 chr3 193808485 193808730 -24228428 - L2 LINE L2 -737 2577 2324 2583 62 7 0 chr3 193809125 193809434 -24227724 + AluY SINE Alu 1 311 0 2027 127 37 0 chr3 193810363 193810663 -24226495 + AluSx SINE Alu 1 311 -1 230 245 11 32 chr3 193811424 193811518 -24225640 + (TA)n Simple_repeat Simple_repeat 2 93 0 21 0 0 0 chr3 193811926 193811947 -24225211 + AT_rich Low_complexity Low_complexity 1 21 0 1789 158 17 0 chr3 193813232 193813524 -24223634 + AluSx SINE Alu 1 297 -15 2333 160 22 83 chr3 193813865 193814360 -24222798 + LTR32 LTR ERVL 7 471 0 253 272 0 12 chr3 193814501 193814582 -24222576 - MER44D DNA MER2_type 0 605 526 * 968 167 92 0 chr3 193814580 193814754 -24222404 - MER47B DNA MER2_type -4 414 225 5631 86 12 0 chr3 193814790 193815190 -24221968 + L1PB1 LINE L1 5380 5795 -356 249 33 0 0 chr3 193815190 193815220 -24221938 + (TG)n Simple_repeat Simple_repeat 2 31 0 5631 86 12 0 chr3 193815220 193815574 -24221584 + L1PB1 LINE L1 5795 6143 -8 471 191 0 24 chr3 193815603 193815687 -24221471 - MER47B DNA MER2_type -336 82 1 * 1046 175 42 46 chr3 193815687 193815716 -24221442 - MER44D DNA MER2_type -1988 503 475 2006 121 32 0 chr3 193815716 193815997 -24221161 + AluSx SINE Alu 1 290 -22 1046 175 42 46 chr3 193815997 193816200 -24220958 - MER44D DNA MER2_type -2016 475 2 392 318 53 21 chr3 193816287 193816539 -24220619 + MLT1I LTR MaLR 68 332 -114 1534 172 135 22 chr3 193816539 193816894 -24220264 - MSTD LTR MaLR -1 395 1 392 318 53 21 chr3 193816894 193816909 -24220249 + MLT1I LTR MaLR 332 345 -101 452 174 165 28 chr3 193817007 193817116 -24220042 + MER31B LTR ERV1 5 128 -338 2106 163 30 35 chr3 193817117 193817673 -24219485 - MLT2A2 LTR ERVL 0 554 3 1311 175 123 12 chr3 193817675 193818009 -24219149 + MER31A LTR ERV1 110 543 0 194 260 151 0 chr3 193819886 193819959 -24217199 + MIR3 SINE MIR 111 194 -14 2337 99 3 6 chr3 193822892 193823205 -24213953 - AluSx SINE Alu 0 312 1 303 28 0 0 chr3 193823491 193823527 -24213631 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 3334 80 0 5 chr3 193823730 193824086 -24213072 - L1PB1 LINE L1 -2 6149 5793 309 51 0 0 chr3 193824086 193824125 -24213033 + (TG)n Simple_repeat Simple_repeat 2 40 0 3334 80 0 5 chr3 193824125 193824136 -24213022 - L1PB1 LINE L1 -358 5793 5783 2425 91 0 0 chr3 193824136 193824433 -24212725 - AluSg SINE Alu -13 297 1 3334 80 0 5 chr3 193824433 193824504 -24212654 - L1PB1 LINE L1 -368 5783 5712 340 228 98 22 chr3 193824639 193824731 -24212427 - MER20B DNA MER1_type -576 207 109 224 239 0 0 chr3 193824914 193824960 -24212198 - MIR SINE MIR -108 154 109 2338 102 0 3 chr3 193825534 193825837 -24211321 - AluSg SINE Alu -8 302 1 183 205 0 0 chr3 193826472 193826511 -24210647 + (CA)n Simple_repeat Simple_repeat 2 40 0 190 258 0 65 chr3 193826609 193826671 -24210487 - L2 LINE L2 -10 3262 3205 253 160 40 0 chr3 193827031 193827081 -24210077 - L2 LINE L2 0 3313 3262 251 271 8 51 chr3 193827185 193827303 -24209855 + MLT1H LTR MaLR 50 162 -387 258 236 0 82 chr3 193827464 193827574 -24209584 + MLT1I LTR MaLR 432 532 -17 651 253 6 12 chr3 193828121 193828287 -24208871 - MER117 DNA MER1_type -26 171 7 2125 123 3 7 chr3 193828331 193828633 -24208525 - AluSp SINE Alu -12 301 1 222 274 32 0 chr3 193828715 193828777 -24208381 + MIR SINE MIR 84 147 -115 1888 150 0 14 chr3 193829161 193829455 -24207703 + AluSq SINE Alu 1 290 -23 987 241 15 30 chr3 193830220 193830361 -24206797 + L1ME1 LINE L1 5904 6041 -125 2037 117 61 73 chr3 193830361 193830756 -24206402 + MLT1B LTR MaLR 1 390 0 987 241 15 30 chr3 193830756 193830876 -24206282 + L1ME1 LINE L1 6041 6161 -5 1837 157 21 0 chr3 193830905 193831205 -24205953 - AluSx SINE Alu 0 306 1 4541 215 53 5 chr3 193831936 193832898 -24204260 - MSTA-int LTR MaLR -642 1009 2 554 176 20 0 chr3 193832899 193833001 -24204157 - MSTA LTR MaLR 0 428 325 2313 71 4 0 chr3 193833129 193833410 -24203748 + AluY SINE Alu 13 294 -17 1953 135 21 0 chr3 193833469 193833758 -24203400 - MER1B DNA MER1_type 0 339 45 217 191 0 63 chr3 193836185 193836248 -24200910 + A-rich Low_complexity Low_complexity 2 60 0 229 225 78 70 chr3 193839064 193839193 -24197965 - L1ME4a LINE L1 -2 6119 5990 4443 152 11 4 chr3 193839559 193840261 -24196897 + MER50 LTR ERV1 3 709 -25 180 274 48 36 chr3 193840842 193840926 -24196232 + L2 LINE L2 2560 2644 -670 202 424 0 0 chr3 193841292 193841384 -24195774 + L2 LINE L2 3004 3095 -177 619 317 49 20 chr3 193841534 193841780 -24195378 + MIR SINE MIR 1 253 -9 434 299 92 10 chr3 193842599 193842806 -24194352 + MIR SINE MIR 37 260 -2 3214 67 20 31 chr3 193844306 193844755 -24192403 + MLT2A1 LTR ERVL 1 444 0 2417 84 0 0 chr3 193844873 193845172 -24191986 - AluY SINE Alu -12 299 1 667 196 45 96 chr3 193845193 193845293 -24191865 - MER63A DNA MER1_type -1483 205 118 1844 173 0 19 chr3 193845293 193845611 -24191547 + AluJo SINE Alu 1 312 0 667 196 45 96 chr3 193845611 193845709 -24191449 - MER63A DNA MER1_type -1570 118 17 484 234 19 26 chr3 193845721 193845875 -24191283 + MIR SINE MIR 81 233 -29 660 268 55 4 chr3 193846017 193846252 -24190906 - MIR SINE MIR -10 252 6 345 207 60 35 chr3 193846262 193846378 -24190780 - MIR3 SINE MIR -5 203 85 2194 23 8 12 chr3 193846690 193846949 -24190209 - AluY SINE Alu -10 301 44 1025 256 111 12 chr3 193847688 193848102 -24189056 - LTR16A1 LTR ERVL 0 457 3 385 263 162 11 chr3 193848595 193848774 -24188384 + MIR SINE MIR 56 261 -1 183 111 167 0 chr3 193850182 193850218 -24186940 + MIR SINE MIR 99 140 -122 242 210 0 0 chr3 193850218 193850280 -24186878 + A-rich Low_complexity Low_complexity 1 62 0 309 308 0 9 chr3 193850280 193850387 -24186771 + MIR SINE MIR 135 240 -22 296 234 51 119 chr3 193851727 193851962 -24185196 - MER102b DNA MER1_type 0 341 123 320 301 53 0 chr3 193852031 193852144 -24185014 - MIR3 SINE MIR -48 160 42 351 219 25 18 chr3 193853071 193853212 -24183946 - MIR3 SINE MIR -65 143 15 2063 144 0 10 chr3 193853216 193853572 -24183586 - AluSq SINE Alu 0 353 1 2391 85 0 16 chr3 193855572 193855888 -24181270 + AluY SINE Alu 1 311 0 3903 123 33 111 chr3 193856005 193856856 -24180302 - LTR1 LTR ERV1 0 785 1 1896 149 149 11 chr3 193857200 193857576 -24179582 + MSTA LTR MaLR 1 428 0 1194 113 12 12 chr3 193858441 193858609 -24178549 + AluSg/x SINE Alu 124 291 -21 2093 104 24 3 chr3 193858615 193858904 -24178254 + AluSc SINE Alu 1 295 -14 248 285 188 21 chr3 193859062 193859206 -24177952 + MIR3 SINE MIR 20 187 -21 305 265 10 10 chr3 193860602 193860700 -24176458 + (CATATA)n Simple_repeat Simple_repeat 1 98 0 287 261 38 130 chr3 193862826 193863010 -24174148 - MIR3 SINE MIR -5 203 37 1054 279 127 14 chr3 193863525 193864094 -24173064 + L1ME4a LINE L1 5453 6090 -31 360 329 51 22 chr3 193864232 193864369 -24172789 - L2 LINE L2 -67 3205 3065 198 0 0 0 chr3 193864880 193864902 -24172256 + (A)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr3 193866095 193866116 -24171042 + AT_rich Low_complexity Low_complexity 1 21 0 1236 217 179 12 chr3 193867328 193867664 -24169494 - MSTD LTR MaLR 0 396 5 6614 234 94 27 chr3 193867666 193869291 -24167867 - MSTD-int LTR MaLR 0 1735 2 1519 251 84 5 chr3 193869293 193869660 -24167498 - MSTD LTR MaLR 0 396 1 321 328 29 35 chr3 193869769 193869943 -24167215 + MIR SINE MIR 20 192 -70 1243 253 92 67 chr3 193870001 193870436 -24166722 - MLT1J LTR MaLR -6 505 60 1664 184 35 69 chr3 193870477 193870853 -24166305 + MLT1A1 LTR MaLR 3 365 0 304 254 0 0 chr3 193871228 193871291 -24165867 - MER94 DNA DNA 0 134 72 26 30 0 0 chr3 193871968 193872001 -24165157 + AT_rich Low_complexity Low_complexity 1 33 0 1855 164 3 16 chr3 193872091 193872402 -24164756 - AluJo SINE Alu -5 307 1 479 260 71 30 chr3 193872785 193872954 -24164204 + 7SK RNA RNA 1 176 -17 2325 110 0 0 chr3 193873494 193873802 -24163356 + AluSq SINE Alu 1 308 -5 1657 240 102 7 chr3 193873913 193874463 -24162695 - MER114 LTR ERV 0 648 47 1810 125 68 24 chr3 193874530 193874825 -24162333 + AluY SINE Alu 1 308 -3 387 0 0 0 chr3 193874828 193874871 -24162287 + (TA)n Simple_repeat Simple_repeat 2 44 0 1084 174 0 0 chr3 193875007 193875203 -24161955 + L1P LINE L1 4387 4582 -1564 1467 90 5 10 chr3 193875203 193875404 -24161754 - AluSp SINE Alu -102 211 12 341 247 31 21 chr3 193876233 193876330 -24160828 + MIR SINE MIR 102 199 -63 453 263 31 19 chr3 193877100 193877260 -24159898 - L1MEd LINE L1 -5063 1056 895 * 684 224 63 109 chr3 193877259 193877510 -24159648 - L1MDa LINE L1 -4109 2431 2217 1951 136 3 3 chr3 193877510 193877804 -24159354 - AluSx SINE Alu -18 294 1 684 224 63 109 chr3 193877804 193878093 -24159065 - L1MDa LINE L1 -4323 2217 1916 1577 204 54 93 chr3 193878676 193879216 -24157942 + LTR40a LTR ERVL 1 519 0 2296 108 0 0 chr3 193879763 193880060 -24157098 + AluSg SINE Alu 1 297 -13 1571 256 109 45 chr3 193880344 193880903 -24156255 - MLT1G1 LTR MaLR 0 595 1 252 333 20 0 chr3 193880920 193881019 -24156139 - MIR SINE MIR -79 183 83 1856 150 10 7 chr3 193881132 193881432 -24155726 - AluJb SINE Alu -11 301 1 284 314 100 21 chr3 193881554 193881694 -24155464 + MIR SINE MIR 4 154 -108 2096 111 4 0 chr3 193882445 193882773 -24154385 + AluSx SINE Alu 1 329 0 1316 235 63 39 chr3 193885049 193885183 -24151975 - L1MA10 LINE L1 -2 6332 6203 2703 91 98 20 chr3 193885183 193885580 -24151578 + MSTC LTR MaLR 1 428 0 1316 235 63 39 chr3 193885580 193885857 -24151301 - L1MA10 LINE L1 -131 6203 5911 885 241 102 83 chr3 193885910 193886249 -24150909 + MLT1F1 LTR MaLR 1 323 -182 505 288 0 0 chr3 193886249 193886360 -24150798 - MER81 DNA DNA 0 114 4 885 241 102 83 chr3 193886360 193886545 -24150613 + MLT1F1 LTR MaLR 323 503 -2 613 179 130 76 chr3 193887895 193887980 -24149178 - MER3 DNA MER1_type 0 209 130 2148 88 7 14 chr3 193887980 193888274 -24148884 + AluSq SINE Alu 1 292 -21 613 179 130 76 chr3 193888274 193888308 -24148850 - MER3 DNA MER1_type -79 130 99 15948 117 38 14 chr3 193888308 193890670 -24146488 + Tigger1 DNA MER2_type 1 2418 0 613 179 130 76 chr3 193890670 193890733 -24146425 - MER3 DNA MER1_type -110 99 16 294 264 54 16 chr3 193891497 193891626 -24145532 - MIR3 SINE MIR -7 201 68 304 256 116 16 chr3 193893211 193893340 -24143818 - MIR SINE MIR -61 201 60 2123 76 22 7 chr3 193893719 193893994 -24143164 - AluSc SINE Alu -7 302 24 216 371 48 9 chr3 193894136 193894241 -24142917 - L2 LINE L2 -8 3264 3156 992 82 0 0 chr3 193894273 193894395 -24142763 - AluSc SINE Alu -187 122 1 186 274 86 71 chr3 193894413 193894610 -24142548 - L2 LINE L2 -217 3055 2856 185 310 28 0 chr3 193894730 193894801 -24142357 - L2 LINE L2 -557 2757 2685 225 65 0 0 chr3 193895457 193895488 -24141670 + (TTG)n Simple_repeat Simple_repeat 3 33 0 1813 125 71 14 chr3 193895790 193896085 -24141073 - AluSx SINE Alu 0 312 1 2316 108 0 0 chr3 193897228 193897535 -24139623 + AluSx SINE Alu 6 312 0 302 234 22 147 chr3 193897626 193897810 -24139348 - MER5B DNA MER1_type 0 178 18 503 204 184 13 chr3 193897900 193898052 -24139106 - MER5B DNA MER1_type 0 178 1 231 61 0 0 chr3 193898167 193898200 -24138958 + (A)n Simple_repeat Simple_repeat 1 33 0 349 344 43 18 chr3 193898552 193898715 -24138443 + MIR SINE MIR 22 188 -74 2369 97 3 0 chr3 193898840 193899139 -24138019 + AluSx SINE Alu 1 300 -12 411 239 115 14 chr3 193899733 193899872 -24137286 - MIR SINE MIR -69 139 23 253 165 76 0 chr3 193900940 193901019 -24136139 + (TTATA)n Simple_repeat Simple_repeat 5 89 0 308 272 141 52 chr3 193901095 193901286 -24135872 + MIR SINE MIR 15 222 -40 831 296 164 19 chr3 193901958 193902685 -24134473 - L1ME4a LINE L1 0 6121 5290 2131 127 0 0 chr3 193903353 193903652 -24133506 + AluSx SINE Alu 1 299 -13 250 328 56 64 chr3 193903669 193903794 -24133364 + L2 LINE L2 3129 3252 -20 285 289 94 8 chr3 193903854 193903982 -24133176 + MIR SINE MIR 25 163 -99 2335 69 0 10 chr3 193904887 193905176 -24131982 + AluY SINE Alu 22 307 -4 449 110 14 0 chr3 193905179 193905252 -24131906 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 256 232 123 84 chr3 193905748 193905871 -24131287 - MER112 DNA MER1_type -36 224 92 2244 91 0 13 chr3 193905871 193906169 -24130989 + AluY SINE Alu 1 294 -17 256 232 123 84 chr3 193906169 193906200 -24130958 - MER112 DNA MER1_type -168 92 64 185 212 0 0 chr3 193906266 193906299 -24130859 + L3 LINE CR1 1524 1556 -21 28 0 0 0 chr3 193907978 193908006 -24129152 + AT_rich Low_complexity Low_complexity 1 28 0 365 319 137 5 chr3 193908577 193908781 -24128377 - MIR SINE MIR -11 251 21 224 284 114 80 chr3 193909997 193910182 -24126976 - MIR SINE MIR -16 192 1 605 225 70 50 chr3 193912090 193912290 -24124868 + MIR3 SINE MIR 2 205 -3 539 168 75 0 chr3 193912416 193912523 -24124635 + L1MC1 LINE L1 6044 6158 -175 1446 142 47 9 chr3 193912533 193912766 -24124392 - AluSg/x SINE Alu 0 312 71 2214 97 3 58 chr3 193912782 193913112 -24124046 - AluSx SINE Alu 0 312 1 25 0 0 0 chr3 193913215 193913240 -24123918 + AT_rich Low_complexity Low_complexity 1 25 0 251 283 0 0 chr3 193913420 193913473 -24123685 - L2 LINE L2 -71 3201 3149 587 341 23 0 chr3 193913504 193913721 -24123437 - MIR SINE MIR -12 250 29 26 30 0 0 chr3 193913751 193913784 -24123374 + AT_rich Low_complexity Low_complexity 1 33 0 1954 127 0 3 chr3 193913790 193914106 -24123052 + AluSx SINE Alu 1 315 0 192 200 91 18 chr3 193914112 193914167 -24122991 - L2 LINE L2 -188 3084 3026 2322 112 0 0 chr3 193915120 193915416 -24121742 - AluSc SINE Alu -13 296 1 472 135 0 14 chr3 193916023 193916097 -24121061 - Tigger5 DNA MER2_type 0 2323 2251 283 143 18 36 chr3 193916065 193916121 -24121037 - Tigger5 DNA MER2_type -2268 55 1 * 2143 135 3 0 chr3 193916178 193916482 -24120676 + AluSx SINE Alu 1 305 -7 216 0 0 0 chr3 193917791 193917815 -24119343 + (A)n Simple_repeat Simple_repeat 1 24 0 312 240 30 10 chr3 193917933 193918033 -24119125 + L1ME4a LINE L1 5978 6079 -42 224 146 24 0 chr3 193919048 193919089 -24118069 + L2 LINE L2 3272 3313 0 1828 79 4 0 chr3 193920189 193920418 -24116740 + AluY SINE Alu 37 266 -45 2306 79 10 3 chr3 193920432 193920723 -24116435 + AluSx SINE Alu 1 293 -19 192 364 13 13 chr3 193921294 193921371 -24115787 - MIR SINE MIR -164 98 22 1576 224 95 29 chr3 193921682 193922222 -24114936 + MLT1F1 LTR MaLR 1 567 0 2173 71 4 0 chr3 193923534 193923800 -24113358 + AluSp SINE Alu 39 305 -8 1554 168 151 7 chr3 193924911 193925209 -24111949 + MER58B DNA MER1_type 1 341 0 201 286 0 0 chr3 193926084 193926140 -24111018 - L2 LINE L2 -5 3267 3212 230 317 104 30 chr3 193926406 193926570 -24110588 + MER5A DNA MER1_type 7 182 -7 570 167 20 0 chr3 193926623 193926725 -24110433 + MER5B DNA MER1_type 73 176 -2 224 347 81 16 chr3 193927181 193927305 -24109853 - L2 LINE L2 -213 3059 2928 459 278 96 9 chr3 193927425 193927592 -24109566 - MER5B DNA MER1_type -1 177 9 2480 46 0 0 chr3 193929322 193929642 -24107516 + AluY SINE Alu 1 320 0 467 233 16 69 chr3 193929826 193930015 -24107143 + L1MC4a LINE L1 5485 5663 -458 612 320 45 20 chr3 193930023 193930267 -24106891 + MIR SINE MIR 2 251 -11 333 295 111 43 chr3 193930304 193930538 -24106620 + L1MC4a LINE L1 5673 5922 -1886 303 230 58 65 chr3 193930549 193930688 -24106470 + HAL1b LINE L1 1193 1330 -18 2498 229 97 19 chr3 193930792 193931512 -24105646 + L1MC4a LINE L1 7033 7808 0 2255 111 3 0 chr3 193931976 193932273 -24104885 + AluSq SINE Alu 1 298 -15 334 309 73 0 chr3 193932437 193932573 -24104585 - MIR SINE MIR -56 206 61 361 238 29 0 chr3 193933173 193933278 -24103880 - MLT1L LTR MaLR -2 613 506 405 0 0 0 chr3 193933365 193933410 -24103748 + (TG)n Simple_repeat Simple_repeat 2 46 0 1759 189 46 3 chr3 193935066 193935389 -24101769 + Tigger3(Golem) DNA MER2_type 1 337 -2692 186 43 0 0 chr3 193935442 193935465 -24101693 + (CCCCCT)n Simple_repeat Simple_repeat 4 26 0 10507 50 4 83 chr3 193935465 193936964 -24100194 + SVA Other Other 1 1380 -6 2393 100 3 0 chr3 193937302 193937603 -24099555 - AluSx SINE Alu -10 302 1 305 383 0 42 chr3 193937603 193937723 -24099435 - MIR SINE MIR -57 151 37 21 57 0 0 chr3 193938618 193938653 -24098505 + AT_rich Low_complexity Low_complexity 1 35 0 858 128 64 98 chr3 193938837 193938989 -24098169 + MER96B DNA MER1_type? 1 144 -273 2428 67 3 7 chr3 193938989 193939288 -24097870 - AluY SINE Alu -13 298 1 858 128 64 98 chr3 193939288 193939369 -24097789 + MER96B DNA MER1_type? 144 226 -191 410 261 232 47 chr3 193939937 193939986 -24097172 - MIR SINE MIR -11 251 212 883 107 57 0 chr3 193939986 193940108 -24097050 + FLAM_C SINE Alu 2 130 -3 410 261 232 47 chr3 193940108 193940269 -24096889 - MIR SINE MIR -50 212 2 1823 157 21 0 chr3 193944914 193945214 -24091944 + AluSx SINE Alu 1 306 0 999 241 15 30 chr3 193945243 193945363 -24091795 - L1ME1 LINE L1 -5 6161 6041 2158 114 61 73 chr3 193945363 193945758 -24091400 - MLT1B LTR MaLR 0 390 1 999 241 15 30 chr3 193945758 193945899 -24091259 - L1ME1 LINE L1 -125 6041 5904 1873 150 0 14 chr3 193946664 193946958 -24090200 - AluSq SINE Alu -23 290 1 241 274 32 0 chr3 193947342 193947404 -24089754 - MIR SINE MIR -115 147 84 2106 123 3 7 chr3 193947486 193947788 -24089370 + AluSp SINE Alu 1 301 -12 665 235 12 18 chr3 193947832 193947998 -24089160 + MER117 DNA MER1_type 7 171 -26 254 236 0 82 chr3 193948545 193948655 -24088503 - MLT1L LTR MaLR -17 532 432 250 271 8 51 chr3 193948816 193948934 -24088224 - MLT1H LTR MaLR -387 162 50 269 160 40 0 chr3 193949038 193949088 -24088070 + L2 LINE L2 3262 3313 0 209 258 0 65 chr3 193949448 193949510 -24087648 + L2 LINE L2 3205 3262 -10 183 205 0 0 chr3 193949608 193949647 -24087511 + (TG)n Simple_repeat Simple_repeat 2 40 0 2321 102 0 3 chr3 193950282 193950585 -24086573 + AluSg SINE Alu 1 302 -8 236 239 0 0 chr3 193951159 193951205 -24085953 + MIR SINE MIR 109 154 -108 335 228 98 22 chr3 193951388 193951480 -24085678 + MER20B DNA MER1_type 109 207 -576 3491 80 0 5 chr3 193951615 193951686 -24085472 + L1PB1 LINE L1 5712 5782 -369 2408 91 0 0 chr3 193951686 193951983 -24085175 + AluSg SINE Alu 1 297 -13 3491 80 0 5 chr3 193951983 193951994 -24085164 + L1PB1 LINE L1 5782 5792 -359 309 51 0 0 chr3 193951994 193952033 -24085125 + (CA)n Simple_repeat Simple_repeat 2 40 0 3491 80 0 5 chr3 193952033 193952389 -24084769 + L1PB1 LINE L1 5792 6149 -2 303 28 0 0 chr3 193952592 193952628 -24084530 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 2019 107 36 0 chr3 193952914 193953194 -24083964 + AluSx SINE Alu 1 290 -22 999 183 50 0 chr3 193953195 193953397 -24083761 - MER44D DNA MER2_type -126 483 2 386 306 55 23 chr3 193953484 193953736 -24083422 + MLT1I LTR MaLR 68 332 -114 1652 175 135 22 chr3 193953736 193954091 -24083067 - MSTD LTR MaLR -1 395 1 386 306 55 23 chr3 193954091 193954106 -24083052 + MLT1I LTR MaLR 332 345 -101 461 202 138 0 chr3 193954204 193954313 -24082845 + MER31B LTR ERV1 5 128 -338 2096 163 30 35 chr3 193954314 193954870 -24082288 - MLT2A2 LTR ERVL 0 554 3 1308 175 123 12 chr3 193954872 193955206 -24081952 + MER31A LTR ERV1 110 543 0 218 260 151 0 chr3 193957083 193957156 -24080002 + MIR3 SINE MIR 111 194 -14 1681 163 71 31 chr3 193958502 193958769 -24078389 - L1MD3 LINE L1 -185 7810 7520 2172 121 0 3 chr3 193958769 193959066 -24078092 - AluSc SINE Alu -13 296 1 1681 163 71 31 chr3 193959066 193959190 -24077968 - L1MD3 LINE L1 -475 7520 7403 281 250 60 24 chr3 193959193 193959277 -24077881 - MLT1F1 LTR MaLR -445 122 36 269 226 32 0 chr3 193959309 193959371 -24077787 - L1MD3 LINE L1 -893 7102 7039 266 307 13 0 chr3 193959888 193959963 -24077195 - L2 LINE L2 -9 3304 3229 975 103 48 12 chr3 193960177 193960342 -24076816 + L1MA5 LINE L1 6124 6294 -6 389 308 146 11 chr3 193960760 193960945 -24076213 - MIR SINE MIR -5 257 48 2291 89 16 0 chr3 193961657 193961960 -24075198 + AluSp SINE Alu 1 308 -5 2008 144 0 0 chr3 193961972 193962282 -24074876 + AluSq SINE Alu 1 310 0 3079 190 65 22 chr3 193962891 193963003 -24074155 + MER82 DNA MER2_type 1 107 -546 2553 70 0 0 chr3 193963003 193963304 -24073854 - AluY SINE Alu -10 301 1 3079 190 65 22 chr3 193963304 193963817 -24073341 + MER82 DNA MER2_type 107 653 0 2436 163 35 16 chr3 193963954 193964378 -24072780 + MSTB1 LTR MaLR 1 432 0 411 287 110 6 chr3 193964514 193964678 -24072480 + L1ME LINE L1 5524 5704 -417 1515 177 0 11 chr3 193964752 193965012 -24072146 + AluSx SINE Alu 40 296 -16 23 33 0 0 chr3 193965133 193965163 -24071995 + AT_rich Low_complexity Low_complexity 1 30 0 2364 98 3 0 chr3 193965969 193966274 -24070884 + AluSg SINE Alu 1 306 -4 972 189 60 15 chr3 193966509 193966710 -24070448 - MER2 DNA MER2_type -135 210 1 213 235 29 73 chr3 193966762 193966830 -24070328 - L2 LINE L2 -5 3267 3203 1491 84 0 11 chr3 193967332 193967522 -24069636 + AluSx SINE Alu 5 192 -120 351 304 91 16 chr3 193967623 193967866 -24069292 + MLT1L LTR MaLR 354 614 -1 249 345 0 12 chr3 193967868 193967952 -24069206 + MIR SINE MIR 159 241 -21 528 248 20 13 chr3 193968709 193968858 -24068300 + MER103 DNA DNA 6 155 -11 380 370 26 30 chr3 193969035 193969305 -24067853 + L2 LINE L2 2815 3083 -189 25 0 0 0 chr3 193969655 193969680 -24067478 + AT_rich Low_complexity Low_complexity 1 25 0 1661 179 3 47 chr3 193970145 193970464 -24066694 + AluJo SINE Alu 5 309 -3 489 289 66 22 chr3 193971182 193971360 -24065798 - MIR SINE MIR 0 262 69 2014 109 0 14 chr3 193971360 193971696 -24065462 + AluSc SINE Alu 1 332 0 489 289 66 22 chr3 193971696 193971744 -24065414 - MIR SINE MIR -193 69 25 185 294 20 0 chr3 193972951 193973002 -24064156 + MIR SINE MIR 79 130 -132 620 355 59 19 chr3 193973757 193974078 -24063080 - L2 LINE L2 -1 3271 2938 424 353 117 28 chr3 193974910 193975621 -24061537 + L2 LINE L2 2078 2851 -463 736 232 27 36 chr3 193975872 193976096 -24061062 - L1MEc LINE L1 -4370 2026 1805 2986 133 24 13 chr3 193976099 193976550 -24060608 - MSTB2 LTR MaLR -1 456 1 1230 273 12 9 chr3 193976575 193976894 -24060264 - L1MEc LINE L1 -5753 643 324 2719 150 76 16 chr3 193976904 193977418 -24059740 - LTR10A LTR ERV1 -64 545 1 269 143 41 0 chr3 193977440 193977489 -24059669 - LTR10B LTR ERV1 -496 51 1 944 244 89 19 chr3 193977493 193977659 -24059499 - L1MEc LINE L1 -6090 306 114 192 77 0 0 chr3 193977659 193977685 -24059473 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 944 244 89 19 chr3 193977685 193977776 -24059382 - L1MEc LINE L1 -6282 114 31 748 179 112 22 chr3 193978844 193979067 -24058091 - MER113 DNA MER1_type? -72 449 207 902 86 0 0 chr3 193979072 193979188 -24057970 - AluSg/x SINE Alu -12 298 183 1502 127 0 26 chr3 193979188 193979416 -24057742 - AluSx SINE Alu -90 222 1 25 83 0 0 chr3 193979490 193979550 -24057608 + AT_rich Low_complexity Low_complexity 1 60 0 376 271 99 72 chr3 193979606 193980022 -24057136 - LTR16A LTR ERVL -10 440 1 221 158 70 88 chr3 193980054 193980111 -24057047 + MIR3 SINE MIR 111 166 -42 2355 88 0 3 chr3 193980208 193980505 -24056653 + AluSc SINE Alu 2 297 -12 2227 106 0 0 chr3 193981230 193981552 -24055606 + AluSx SINE Alu 1 322 0 573 146 24 8 chr3 193982918 193983041 -24054117 + CT-rich Low_complexity Low_complexity 4 128 0 296 341 63 0 chr3 193983579 193983705 -24053453 + MIR SINE MIR 7 140 -122 22 35 0 0 chr3 193984093 193984122 -24053036 + AT_rich Low_complexity Low_complexity 1 29 0 257 208 0 0 chr3 193984123 193984171 -24052987 - L1MA8 LINE L1 -216 6075 6028 495 48 0 0 chr3 193984175 193984237 -24052921 + (TTCC)n Simple_repeat Simple_repeat 4 65 0 233 69 0 0 chr3 193984237 193984266 -24052892 + (TC)n Simple_repeat Simple_repeat 1 29 0 806 151 0 8 chr3 193984266 193984283 -24052875 - AluSg/x SINE Alu -3 309 293 357 119 34 0 chr3 193984283 193984342 -24052816 - L1PA5 LINE L1 0 6154 6094 806 151 0 8 chr3 193984342 193984450 -24052708 - AluSg/x SINE Alu -19 293 185 1189 144 6 6 chr3 193984450 193984631 -24052527 - AluSx SINE Alu -90 222 42 574 259 63 27 chr3 193985705 193985897 -24051261 - MIR SINE MIR -63 145 1 263 307 133 24 chr3 193986601 193986767 -24050391 + MIR SINE MIR 79 262 0 284 306 59 41 chr3 193987508 193987678 -24049480 + MIR3 SINE MIR 29 201 -7 2257 106 0 0 chr3 193988323 193988625 -24048533 + AluSc SINE Alu 1 302 -7 414 256 29 51 chr3 193988876 193989013 -24048145 + MIR SINE MIR 1 134 -128 717 241 86 102 chr3 193989825 193990382 -24046776 + L1ME4a LINE L1 5574 6121 0 486 275 8 8 chr3 193990421 193990541 -24046617 - MIR3 SINE MIR -41 167 48 2157 107 10 3 chr3 193990605 193990896 -24046262 + AluSq SINE Alu 1 293 -20 940 199 0 6 chr3 193991630 193991801 -24045357 + AluJb SINE Alu 121 290 -22 691 289 32 45 chr3 193991807 193992053 -24045105 + MIR SINE MIR 20 262 0 238 239 57 34 chr3 193992303 193992391 -24044767 - MIR3 SINE MIR -29 179 90 470 154 0 66 chr3 193993985 193994076 -24043082 + AluJ/FRAM SINE Alu 225 309 -3 619 208 0 0 chr3 193994319 193994415 -24042743 - AluJb SINE Alu -84 228 133 287 261 38 130 chr3 193995487 193995671 -24041487 - MIR3 SINE MIR -5 203 37 1393 77 11 0 chr3 193996609 193996790 -24040368 + AluY SINE Alu 103 285 -26 1939 135 21 0 chr3 193996858 193997147 -24040011 - MER1B DNA MER1_type 0 339 45 964 173 32 16 chr3 194098206 194098391 -23938767 - MER5A DNA MER1_type -1 188 1 2371 97 0 0 chr3 194099683 194099981 -23937177 + AluSq SINE Alu 1 298 -15 1992 134 30 13 chr3 194100318 194100616 -23936542 - AluSp SINE Alu -10 303 1 4899 145 44 5 chr3 194100617 194101508 -23935650 - L1MC1 LINE L1 -6 6327 5402 1461 139 115 24 chr3 194101513 194101851 -23935307 - THE1C LTR MaLR -6 369 1 504 175 8 24 chr3 194101853 194101979 -23935179 - L1MC1 LINE L1 -927 5406 5283 819 148 0 8 chr3 194102032 194102160 -23934998 - AluJb SINE Alu -185 127 1 1554 175 36 4 chr3 194102169 194102449 -23934709 - AluJb SINE Alu -23 289 1 2129 224 158 3 chr3 194102449 194103208 -23933950 - L1MC1 LINE L1 -1141 5005 4129 816 125 26 20 chr3 194103452 194103604 -23933554 - L1 LINE L1 -1523 4623 4471 2223 101 3 7 chr3 194103617 194103914 -23933244 + AluSg SINE Alu 1 296 -14 1013 285 77 28 chr3 194104542 194104738 -23932420 - L1MC4a LINE L1 -1780 6028 5843 2142 109 0 10 chr3 194104738 194105040 -23932118 - AluSq SINE Alu -14 299 1 1013 285 77 28 chr3 194105040 194105478 -23931680 - L1MC4a LINE L1 -1965 5843 5363 853 180 22 45 chr3 194105586 194105808 -23931350 - L1ME2 LINE L1 -10 6154 5938 358 225 20 60 chr3 194105825 194105976 -23931182 - L1ME3 LINE L1 -71 6091 5947 1150 224 92 19 chr3 194106058 194106428 -23930730 - L1ME3 LINE L1 -393 5769 5373 2241 110 0 3 chr3 194106465 194106764 -23930394 - AluSx SINE Alu -14 298 1 1910 168 0 0 chr3 194107251 194107549 -23929609 - AluSx SINE Alu -12 300 3 2178 102 0 7 chr3 194107775 194108070 -23929088 - AluY SINE Alu -14 297 5 2295 94 7 3 chr3 194109738 194110045 -23927113 + AluSg SINE Alu 1 308 -2 228 86 0 0 chr3 194110083 194110118 -23927040 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 528 297 41 20 chr3 194110319 194110565 -23926593 - L1ME1 LINE L1 -5 6161 5911 493 226 9 0 chr3 194110577 194110683 -23926475 + MLT1D LTR MaLR 1 107 -398 405 259 68 27 chr3 194110813 194111033 -23926125 + MLT1D LTR MaLR 132 360 -145 917 212 18 0 chr3 194111034 194111199 -23925959 - AluJb SINE Alu -8 304 137 656 201 6 31 chr3 194111199 194111358 -23925800 + MLT1D LTR MaLR 351 505 0 346 191 22 11 chr3 194111393 194111482 -23925676 - L1ME1 LINE L1 -361 5805 5716 278 264 64 8 chr3 194111545 194111670 -23925488 - L1ME3 LINE L1 -773 5373 5242 288 154 0 0 chr3 194111691 194111743 -23925415 + (TG)n Simple_repeat Simple_repeat 1 52 0 244 344 5 5 chr3 194112211 194112350 -23924808 + C-rich Low_complexity Low_complexity 2 215 0 2407 106 0 0 chr3 194112525 194112837 -23924321 + AluSx SINE Alu 1 312 0 626 290 103 27 chr3 194112875 194113019 -23924139 + L1MC/D LINE L1 5355 5487 -677 2334 74 3 7 chr3 194113019 194113317 -23923841 + AluSg SINE Alu 1 297 -13 626 290 103 27 chr3 194113317 194113606 -23923552 + L1MC/D LINE L1 5487 5825 -339 263 211 0 66 chr3 194113784 194113860 -23923298 + HAL1 LINE L1 2094 2164 -343 2051 158 0 19 chr3 194113885 194114201 -23922957 + AluJo SINE Alu 3 312 0 1348 97 0 0 chr3 194114245 194114430 -23922728 + AluY SINE Alu 119 303 -8 2322 118 0 0 chr3 194114461 194114774 -23922384 + AluSp SINE Alu 1 313 0 1915 141 39 0 chr3 194115038 194115322 -23921836 - AluSx SINE Alu -17 295 1 2308 85 3 3 chr3 194115778 194116072 -23921086 - AluSc SINE Alu -15 294 1 2112 106 35 0 chr3 194116740 194117022 -23920136 + AluSg SINE Alu 1 292 -18 425 174 83 66 chr3 194117521 194117642 -23919516 - L2 LINE L2 -5 3308 3186 1279 197 13 13 chr3 194117666 194117905 -23919253 + AluJo SINE Alu 63 301 -11 751 109 0 0 chr3 194118373 194118474 -23918684 + AluSg/x SINE Alu 204 304 -5 1605 151 0 0 chr3 194118739 194118977 -23918181 + AluSx SINE Alu 57 294 -18 1930 158 171 65 chr3 194118992 194119687 -23917471 + pTR5 LTR ERV1 743 1708 -730 2277 96 3 0 chr3 194120553 194120845 -23916313 - AluSp SINE Alu -19 294 2 2349 82 0 3 chr3 194121299 194121592 -23915566 + AluSx SINE Alu 2 293 -19 2375 82 0 13 chr3 194121706 194122010 -23915148 + AluSg SINE Alu 2 301 -9 262 198 308 11 chr3 194122821 194122912 -23914246 - L2 LINE L2 -4 3309 3192 807 284 9 9 chr3 194123092 194123310 -23913848 - MLT1J LTR MaLR -184 327 110 6477 128 149 101 chr3 194123425 194125045 -23912113 - pTR5 LTR ERV1 0 2438 741 573 256 31 0 chr3 194125047 194125176 -23911982 - AluJo SINE Alu -75 237 105 379 326 161 38 chr3 194125176 194125441 -23911717 - L2 LINE L2 -261 3052 2742 2521 60 0 0 chr3 194125441 194125742 -23911416 + AluY SINE Alu 2 302 -9 379 326 161 38 chr3 194125742 194125801 -23911357 - L2 LINE L2 -571 2742 2692 331 232 0 0 chr3 194125806 194125862 -23911296 + AluJ/monomer SINE Alu 1 56 -245 2073 120 3 16 chr3 194125862 194126171 -23910987 + AluSq SINE Alu 1 305 -8 1086 289 34 3 chr3 194126173 194126467 -23910691 - L2 LINE L2 -856 2458 2156 953 203 60 70 chr3 194126724 194126792 -23910366 - MLT1A1 LTR MaLR 0 365 298 1910 90 102 0 chr3 194126792 194127068 -23910090 + AluSq SINE Alu 1 302 0 953 203 60 70 chr3 194127068 194127313 -23909845 - MLT1A1 LTR MaLR -67 298 54 2025 116 11 3 chr3 194127717 194128037 -23909121 + AluSq SINE Alu 1 322 0 1842 111 96 4 chr3 194128335 194128606 -23908552 + AluSx SINE Alu 6 301 -11 357 43 0 0 chr3 194129656 194129703 -23907455 + (TG)n Simple_repeat Simple_repeat 2 48 0 325 91 0 0 chr3 194129703 194129747 -23907411 - AluSx SINE Alu -17 285 242 1972 117 4 0 chr3 194129747 194130012 -23907146 - AluSx SINE Alu -46 266 1 243 0 0 0 chr3 194130018 194130045 -23907113 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 450 53 0 0 chr3 194130044 194130101 -23907057 + (TA)n Simple_repeat Simple_repeat 2 58 0 2407 48 3 7 chr3 194130101 194130392 -23906766 - AluY SINE Alu -21 290 1 230 265 0 0 chr3 194130495 194130544 -23906614 - L2 LINE L2 -80 3233 3185 446 242 199 0 chr3 194130750 194130911 -23906247 - MER112 DNA MER1_type -2 258 66 1826 111 11 32 chr3 194131010 194131290 -23905868 - AluSq SINE Alu -39 274 1 1745 144 21 21 chr3 194131924 194132209 -23904949 + AluJb SINE Alu 6 290 -22 21 0 0 0 chr3 194132221 194132242 -23904916 + AT_rich Low_complexity Low_complexity 1 21 0 1622 183 4 4 chr3 194132409 194132688 -23904470 + AluJb SINE Alu 14 292 -20 1575 196 14 3 chr3 194133022 194133313 -23903845 + AluJb SINE Alu 2 295 -17 340 236 81 132 chr3 194133762 194133947 -23903211 + HAL1 LINE L1 892 1052 -1455 2062 106 0 61 chr3 194133947 194134259 -23902899 + AluSx SINE Alu 1 293 -19 340 236 81 132 chr3 194134259 194134421 -23902737 + HAL1 LINE L1 1052 1221 -1286 559 254 202 8 chr3 194134563 194135059 -23902099 + L1MB2 LINE L1 2521 3112 -3034 360 241 157 58 chr3 194135438 194135584 -23901574 + L1MB2 LINE L1 4864 4994 -1152 2029 118 24 0 chr3 194135584 194135872 -23901286 + AluSp SINE Alu 1 295 -18 360 241 157 58 chr3 194135872 194136069 -23901089 + L1MB2 LINE L1 4994 5241 -905 1946 105 17 10 chr3 194136069 194136363 -23900795 + AluSx SINE Alu 1 296 -16 1004 82 75 0 chr3 194136911 194137057 -23900101 - MER30 DNA MER1_type -73 157 1 21 0 0 0 chr3 194137074 194137095 -23900063 + AT_rich Low_complexity Low_complexity 1 21 0 2437 177 62 8 chr3 194137776 194138174 -23898984 + L1MB2 LINE L1 5662 6092 -79 2436 192 38 36 chr3 194138174 194138648 -23898510 - MER66A LTR ERV1 -3 475 1 2437 177 62 8 chr3 194138648 194138730 -23898428 + L1MB2 LINE L1 6092 6168 -3 33 25 0 0 chr3 194138753 194138793 -23898365 + AT_rich Low_complexity Low_complexity 1 40 0 2830 217 81 8 chr3 194138811 194139420 -23897738 - MER82 DNA MER2_type 0 653 1 2136 94 25 3 chr3 194140019 194140305 -23896853 + AluSp SINE Alu 1 292 -21 1385 189 56 62 chr3 194140411 194140521 -23896637 - MER58B DNA MER1_type -2083 337 228 2361 71 13 13 chr3 194140521 194140829 -23896329 + AluY SINE Alu 1 308 -3 1385 189 56 62 chr3 194140829 194141057 -23896101 - MER58B DNA MER1_type -2192 228 1 581 245 191 5 chr3 194141253 194141441 -23895717 + MER58A DNA MER1_type 1 223 -1 480 299 90 24 chr3 194141602 194141813 -23895345 + ERVL LTR ERVL 1883 2107 -3657 309 340 9 0 chr3 194142022 194142128 -23895030 + ERVL LTR ERVL 2310 2416 -3069 473 280 47 7 chr3 194142187 194142337 -23894821 + ERVL LTR ERVL 2548 2703 -3061 2073 101 7 17 chr3 194142340 194142638 -23894520 - AluSq SINE Alu -18 295 1 538 225 136 0 chr3 194142639 194142808 -23894350 + Tigger6 DNA MER2_type 1404 1595 -2 210 250 36 54 chr3 194143083 194143139 -23894019 - L2 LINE L2 -15 3257 3203 632 204 63 28 chr3 194144257 194144399 -23892759 + MER5A DNA MER1_type 3 149 -40 692 155 29 0 chr3 194144455 194144558 -23892600 + U6 snRNA snRNA 2 107 0 575 131 0 0 chr3 194144558 194144642 -23892516 + L1MA3 LINE L1 6222 6305 0 1649 177 107 27 chr3 194145079 194145731 -23891427 - L1M4 LINE L1 -584 5594 4907 198 294 141 55 chr3 194146061 194146224 -23890934 + L3 LINE CR1 1339 1515 -62 23 68 0 0 chr3 194149186 194149230 -23887928 + AT_rich Low_complexity Low_complexity 1 44 0 455 204 246 0 chr3 194149273 194149415 -23887743 - L1MC4 LINE L1 -389 7653 7477 197 326 105 66 chr3 194149534 194149715 -23887443 + MIR SINE MIR 5 192 -70 709 85 47 19 chr3 194149775 194149881 -23887277 + HY1 scRNA scRNA 2 110 -2 425 296 9 9 chr3 194150107 194150222 -23886936 + MIR SINE MIR 30 144 -64 2291 98 0 3 chr3 194151302 194151607 -23885551 + AluSq SINE Alu 1 304 -9 328 333 131 0 chr3 194151787 194151940 -23885218 + L2 LINE L2 3140 3312 -1 2145 117 3 0 chr3 194153481 194153771 -23883387 + AluSp SINE Alu 3 293 -20 2156 76 0 28 chr3 194153834 194154124 -23883034 + AluY SINE Alu 1 282 -29 405 0 0 0 chr3 194154129 194154174 -23882984 + (TA)n Simple_repeat Simple_repeat 1 45 0 21 36 0 0 chr3 194155041 194155069 -23882089 + AT_rich Low_complexity Low_complexity 1 28 0 1454 206 45 24 chr3 194155151 194155443 -23881715 - AluJb SINE Alu -4 298 1 464 197 15 12 chr3 194156896 194157030 -23880128 - MIR3 SINE MIR -6 202 16 266 223 47 109 chr3 194157352 194157462 -23879696 + L3 LINE CR1 799 893 -684 2422 74 0 7 chr3 194157462 194157761 -23879397 - AluY SINE Alu -14 297 1 266 223 47 109 chr3 194157761 194157843 -23879315 + L3 LINE CR1 893 979 -598 234 179 0 0 chr3 194157907 194157946 -23879212 - L1MC4 LINE L1 -1084 6958 6920 2409 70 0 17 chr3 194157947 194158248 -23878910 - AluY SINE Alu -15 296 1 694 157 14 41 chr3 194158308 194158455 -23878703 - FRAM SINE Alu -13 163 21 22 35 0 0 chr3 194158475 194158504 -23878654 + AT_rich Low_complexity Low_complexity 1 29 0 1273 128 5 11 chr3 194158763 194158950 -23878208 - AluJo SINE Alu -126 186 1 404 190 190 14 chr3 194158998 194159140 -23878018 - Charlie1a DNA MER1_type -1248 207 41 505 301 31 50 chr3 194159178 194159436 -23877722 - MLT1I LTR MaLR -111 298 59 1900 125 48 3 chr3 194160038 194160327 -23876831 + AluSg SINE Alu 4 305 -5 1985 105 22 4 chr3 194160329 194160605 -23876553 + AluSp SINE Alu 1 281 -32 240 35 0 0 chr3 194160605 194160634 -23876524 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 419 272 44 25 chr3 194160878 194161036 -23876122 + LTR67 LTR ERVL 383 543 -14 194 293 14 3 chr3 194161051 194161117 -23876041 - MIR SINE MIR -63 145 82 1085 214 186 30 chr3 194161223 194161518 -23875640 + MER58B DNA MER1_type 1 341 0 296 296 112 13 chr3 194162645 194162797 -23874361 - MIR3 SINE MIR -4 204 38 1396 130 225 11 chr3 194162941 194163217 -23873941 + MER1B DNA MER1_type 3 337 0 1831 103 46 8 chr3 194163357 194163620 -23873538 + AluSq SINE Alu 4 276 -37 204 243 0 43 chr3 194164627 194164697 -23872461 + L2 LINE L2 3167 3233 -80 2040 117 31 0 chr3 194164750 194165041 -23872117 + AluSx SINE Alu 1 300 -12 658 183 16 8 chr3 194165544 194165670 -23871488 - FLAM_A SINE Alu -6 127 1 436 271 120 71 chr3 194166068 194166374 -23870784 - L1MC4a LINE L1 -1893 5915 5575 2138 113 0 0 chr3 194166374 194166684 -23870474 - AluSx SINE Alu -2 310 1 436 271 120 71 chr3 194166684 194166867 -23870291 - L1MC4a LINE L1 -2233 5575 5402 338 181 109 123 chr3 194166923 194167123 -23870035 - L1ME3 LINE L1 -140 6034 5824 253 168 105 53 chr3 194167121 194167216 -23869942 - L1ME3 LINE L1 -860 5442 5340 * 1532 164 94 118 chr3 194167484 194167873 -23869285 + Tigger6a DNA MER2_type 375 749 -848 1690 182 0 0 chr3 194167873 194168170 -23868988 + AluJb SINE Alu 1 297 -15 1532 164 94 118 chr3 194168170 194168303 -23868855 + Tigger6a DNA MER2_type 749 884 -199 1128 159 0 0 chr3 194168305 194168481 -23868677 - AluSg/x SINE Alu -7 305 130 318 289 135 0 chr3 194169120 194169224 -23867934 + L2 LINE L2 2609 2726 -588 2059 103 0 0 chr3 194169281 194169562 -23867596 - AluSp SINE Alu -32 281 1 2016 70 3 100 chr3 194169562 194169728 -23867430 - AluSg SINE Alu -13 297 177 2412 51 0 3 chr3 194169728 194170024 -23867134 - AluY SINE Alu -16 295 1 2016 70 3 100 chr3 194170024 194170186 -23866972 - AluSg SINE Alu -133 177 1 376 309 169 41 chr3 194170187 194170694 -23866464 + L2 LINE L2 2727 3313 0 2198 85 3 3 chr3 194170822 194171117 -23866041 - AluSq SINE Alu -18 295 1 2090 131 0 0 chr3 194171172 194171538 -23865620 - AluSx SINE Alu 0 366 1 664 332 46 0 chr3 194171695 194171936 -23865222 + MIR SINE MIR 1 252 -10 1010 76 0 0 chr3 194172249 194172380 -23864778 + AluSg SINE Alu 1 131 -179 1908 117 17 10 chr3 194172384 194172683 -23864475 + AluSx SINE Alu 1 301 -11 915 152 6 6 chr3 194172999 194173177 -23863981 + AluSq SINE Alu 135 312 -1 346 93 56 0 chr3 194173356 194173410 -23863748 - AluJo SINE Alu -11 291 235 1054 168 0 6 chr3 194173417 194173596 -23863562 - AluJo SINE Alu -134 178 1 312 257 9 67 chr3 194173777 194173882 -23863276 - L1MC4 LINE L1 -1338 6704 6606 2331 77 0 0 chr3 194173903 194174200 -23862958 - AluSg SINE Alu -13 297 1 2181 93 0 0 chr3 194175071 194175361 -23861797 - AluSg SINE Alu -20 290 1 231 366 81 12 chr3 194175812 194175984 -23861174 + MIR SINE MIR 73 256 -6 189 150 125 0 chr3 194176046 194176086 -23861072 + L2 LINE L2 3261 3305 -8 2031 124 0 3 chr3 194176175 194176473 -23860685 - AluSx SINE Alu -11 301 5 1579 180 13 7 chr3 194176767 194177073 -23860085 - AluJo SINE Alu -4 308 1 556 181 0 0 chr3 194177295 194177389 -23859769 - AluSp/q SINE Alu -7 306 213 1716 106 0 146 chr3 194177389 194177738 -23859420 - pTR5 LTR ERV1 -410 2028 1731 200 308 0 49 chr3 194177741 194177926 -23859232 + C-rich Low_complexity Low_complexity 5 180 0 921 152 0 0 chr3 194178521 194178679 -23858479 - AluSp/q SINE Alu 0 313 156 902 99 0 0 chr3 194178809 194178940 -23858218 + AluSp/q SINE Alu 178 308 -5 2150 85 7 3 chr3 194178981 194179275 -23857883 + AluSx SINE Alu 1 295 -17 1653 192 0 3 chr3 194179428 194179730 -23857428 - AluJo SINE Alu -11 301 1 2333 151 29 29 chr3 194179999 194180444 -23856714 + MSTB2 LTR MaLR 1 445 -12 256 339 45 18 chr3 194180604 194180716 -23856442 + MIR SINE MIR 28 142 -66 758 258 62 62 chr3 194181196 194181305 -23855853 - MIR SINE MIR 0 262 154 2269 93 3 3 chr3 194181305 194181615 -23855543 - AluSp SINE Alu -3 310 1 758 258 62 62 chr3 194181615 194181765 -23855393 - MIR SINE MIR -107 155 3 412 178 27 0 chr3 194182296 194182369 -23854789 - MER58B DNA MER1_type -2 339 265 1552 91 129 23 chr3 194182909 194183172 -23853986 - AluSq SINE Alu -22 291 1 1415 140 27 0 chr3 194183495 194183740 -23853418 + AluSx SINE Alu 56 306 0 1091 252 92 21 chr3 194183740 194184177 -23852981 + L1MEc LINE L1 1570 2037 -4359 2055 75 39 0 chr3 194184187 194184466 -23852692 + AluSq SINE Alu 1 290 -23 455 217 26 9 chr3 194184495 194184610 -23852548 + L1M4 LINE L1 4767 4883 -1263 429 333 94 0 chr3 194184787 194184967 -23852191 + MIR SINE MIR 37 233 -29 2016 96 6 51 chr3 194187102 194187276 -23849882 - AluSq SINE Alu -15 298 143 2310 86 0 0 chr3 194187276 194187580 -23849578 - AluSx SINE Alu -8 304 1 2016 96 6 51 chr3 194187580 194187717 -23849441 - AluSq SINE Alu -170 143 1 1767 129 68 0 chr3 194187874 194188153 -23849005 - AluSx SINE Alu -14 298 1 1906 138 6 3 chr3 194188155 194188466 -23848692 - AluSx SINE Alu 0 312 1 2385 81 0 0 chr3 194188501 194188810 -23848348 - AluSc SINE Alu 0 309 1 2346 55 13 3 chr3 194188821 194189129 -23848029 - AluY SINE Alu 0 311 1 1810 156 0 31 chr3 194189238 194189559 -23847599 - AluJb SINE Alu -1 311 1 1829 183 67 6 chr3 194190112 194190456 -23846702 + MLT1A1 LTR MaLR 1 365 0 1649 158 14 3 chr3 194190585 194190877 -23846281 - AluJb SINE Alu -17 295 1 2031 100 0 7 chr3 194191413 194191692 -23845466 + AluSx SINE Alu 1 277 -35 2166 107 3 0 chr3 194191736 194192035 -23845123 + AluSq SINE Alu 1 300 -13 50 87 0 0 chr3 194192916 194193043 -23844115 + GC_rich Low_complexity Low_complexity 1 127 0 40 59 0 0 chr3 194193478 194193546 -23843612 + GC_rich Low_complexity Low_complexity 1 68 0 274 201 19 69 chr3 194193721 194193880 -23843278 + G-rich Low_complexity Low_complexity 5 155 0 210 37 0 0 chr3 194194017 194194044 -23843114 + (CGG)n Simple_repeat Simple_repeat 3 29 0 278 98 20 0 chr3 194194072 194194123 -23843035 + (CGGG)n Simple_repeat Simple_repeat 1 52 0 32 43 0 0 chr3 194194126 194194172 -23842986 + GC_rich Low_complexity Low_complexity 1 46 0 39 22 0 0 chr3 194194285 194194331 -23842827 + GC_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr3 194194451 194194472 -23842686 + GC_rich Low_complexity Low_complexity 1 21 0 364 271 135 52 chr3 194195500 194195563 -23841595 + MIR SINE MIR 49 105 -157 2138 80 7 13 chr3 194195563 194195887 -23841271 - AluSq SINE Alu 0 313 1 364 271 135 52 chr3 194195887 194196015 -23841143 + MIR SINE MIR 105 256 -6 1888 81 46 59 chr3 194196333 194196640 -23840518 - AluSc SINE Alu -6 303 1 2090 80 35 3 chr3 194196647 194196933 -23840225 - AluSg SINE Alu -14 296 2 1855 122 10 20 chr3 194198138 194198442 -23838716 + AluSq SINE Alu 1 301 -12 195 273 126 63 chr3 194199267 194199410 -23837748 - L2 LINE L2 -463 2851 2700 2115 84 17 3 chr3 194199809 194200108 -23837050 - AluY SINE Alu -8 303 1 2440 164 116 9 chr3 194200351 194200890 -23836268 - L1MD2 LINE L1 -3 7976 6163 475 231 17 17 chr3 194200892 194201009 -23836149 - MLT1F1 LTR MaLR -449 118 2 1914 94 3 50 chr3 194201027 194201349 -23835809 - AluSp SINE Alu 0 308 1 1766 152 23 13 chr3 194201598 194201908 -23835250 + AluSq SINE Alu 1 313 0 1658 152 0 94 chr3 194201922 194202057 -23835101 + AluJb SINE Alu 2 148 -154 1851 137 0 0 chr3 194202057 194202328 -23834830 + AluSg SINE Alu 1 271 -39 1658 152 0 94 chr3 194202328 194202520 -23834638 + AluJb SINE Alu 148 298 -4 351 0 0 0 chr3 194202542 194202581 -23834577 + (TA)n Simple_repeat Simple_repeat 2 40 0 2161 92 0 7 chr3 194202583 194202876 -23834282 - AluSg SINE Alu -19 291 1 1766 137 14 14 chr3 194203244 194203537 -23833621 - AluSp SINE Alu -18 295 3 206 299 93 31 chr3 194204151 194204248 -23832910 + L2 LINE L2 3172 3274 -39 1623 154 17 20 chr3 194204428 194204726 -23832432 - AluJo SINE Alu -15 297 1 800 181 3 132 chr3 194205300 194205412 -23831746 + L1MD3 LINE L1 6896 7021 -974 2056 104 14 7 chr3 194205412 194205709 -23831449 + AluSg SINE Alu 1 299 -11 800 181 3 132 chr3 194205709 194205900 -23831258 + L1MD3 LINE L1 7021 7160 -835 736 242 22 17 chr3 194205901 194206079 -23831079 + FRAM SINE Alu 1 175 -1 251 120 0 40 chr3 194206091 194206141 -23831017 + (GGGGA)n Simple_repeat Simple_repeat 4 51 0 249 33 0 0 chr3 194206141 194206171 -23830987 + (CAAGC)n Simple_repeat Simple_repeat 3 32 0 519 202 17 17 chr3 194206173 194206292 -23830866 + L1MD3 LINE L1 7159 7277 -718 2281 71 10 7 chr3 194207020 194207315 -23829843 - AluSq SINE Alu -17 296 1 521 246 16 40 chr3 194207748 194207874 -23829284 + L3b LINE CR1 1372 1494 -89 1980 109 13 16 chr3 194208331 194208634 -23828524 + AluSp SINE Alu 1 302 -11 200 227 40 0 chr3 194209010 194209085 -23828073 + CT-rich Low_complexity Low_complexity 5 82 0 1210 112 32 5 chr3 194209307 194209494 -23827664 + AluSq SINE Alu 105 296 -17 25 31 0 0 chr3 194209716 194209748 -23827410 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chr3 194209977 194209999 -23827159 + (T)n Simple_repeat Simple_repeat 1 22 0 814 67 50 0 chr3 194210653 194210772 -23826386 - AluSq/x SINE Alu -187 125 1 1341 184 96 7 chr3 194210772 194211043 -23826115 - AluJb SINE Alu -17 295 1 233 270 44 44 chr3 194211310 194211469 -23825689 - MLT1J1 LTR MaLR -280 166 8 640 161 95 0 chr3 194211526 194211694 -23825464 - AluSc SINE Alu -21 288 105 1144 91 34 0 chr3 194211808 194211983 -23825175 + AluSq SINE Alu 113 293 -20 750 212 14 0 chr3 194211994 194212140 -23825018 + FRAM SINE Alu 1 148 -18 254 221 44 29 chr3 194212287 194212355 -23824803 + MLT1K LTR MaLR 512 580 -8 1100 169 0 55 chr3 194212355 194212628 -23824530 + AluSg SINE Alu 30 287 -23 2136 99 3 0 chr3 194212943 194213237 -23823921 + AluSg SINE Alu 1 295 -15 297 250 0 48 chr3 194213541 194213645 -23823513 - L1ME LINE L1 -297 5824 5726 593 256 19 12 chr3 194215048 194215208 -23821950 - MIR SINE MIR -3 259 99 218 351 71 26 chr3 194215534 194215688 -23821470 - L2 LINE L2 -838 2476 2316 249 269 15 0 chr3 194215967 194216034 -23821124 - MLT1J LTR MaLR -352 159 92 195 42 0 0 chr3 194216880 194216904 -23820254 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1768 170 0 11 chr3 194216918 194217201 -23819957 - AluJo SINE Alu -32 280 1 23 33 0 0 chr3 194217205 194217235 -23819923 + AT_rich Low_complexity Low_complexity 1 30 0 1397 167 62 47 chr3 194217295 194217571 -23819587 + AluJb SINE Alu 1 280 -32 267 127 0 42 chr3 194217571 194217642 -23819516 + (TA)n Simple_repeat Simple_repeat 2 69 0 569 87 29 29 chr3 194217789 194217892 -23819266 + AluY SINE Alu 196 298 -13 1943 131 3 42 chr3 194218938 194219244 -23817914 - AluSx SINE Alu -18 294 1 264 295 29 104 chr3 194219832 194220005 -23817153 + MIR3 SINE MIR 34 193 -15 235 351 63 0 chr3 194220648 194220759 -23816399 - MIR SINE MIR -60 202 85 1539 153 20 8 chr3 194221087 194221341 -23815817 + MER47B DNA MER2_type 162 418 0 2111 117 4 0 chr3 194222770 194223051 -23814107 - AluSq SINE Alu -27 286 5 412 135 0 68 chr3 194223101 194223175 -23813983 + MLT1D LTR MaLR 1 69 -436 * 2209 151 98 0 chr3 194223171 194223568 -23813590 - LTR47A LTR ERVL -16 436 1 693 246 134 60 chr3 194223569 194224095 -23813063 + MLT1D LTR MaLR 65 626 0 285 244 207 17 chr3 194224417 194224610 -23812548 - MIR SINE MIR -6 256 30 1184 235 109 2 chr3 194224724 194225120 -23812038 + L1MD3 LINE L1 2439 2876 -3270 763 145 8 0 chr3 194225122 194225239 -23811919 + FLAM_C SINE Alu 1 118 -15 30 45 0 0 chr3 194225239 194225283 -23811875 + AT_rich Low_complexity Low_complexity 1 44 0 6205 133 11 3 chr3 194225294 194226664 -23810494 - L1PB1 LINE L1 -8 6143 4765 42 36 0 0 chr3 194226667 194226723 -23810435 + AT_rich Low_complexity Low_complexity 1 56 0 3815 243 60 34 chr3 194226727 194226860 -23810298 + L1MD3 LINE L1 2872 3000 -3146 1568 146 23 105 chr3 194226860 194227202 -23809956 + AluYb8 SINE Alu 1 314 -4 3815 243 60 34 chr3 194227202 194228600 -23808558 + L1MD3 LINE L1 3000 4443 -1703 3202 217 76 17 chr3 194228581 194228897 -23808261 + L1MD3 LINE L1 4858 5154 -992 * 1571 193 3 20 chr3 194228897 194229193 -23807965 + AluJo SINE Alu 1 291 -21 3202 217 76 17 chr3 194229193 194229226 -23807932 + L1MD3 LINE L1 5154 5184 -962 2143 139 0 0 chr3 194229226 194229521 -23807637 + AluSx SINE Alu 1 295 -17 3202 217 76 17 chr3 194229521 194230545 -23806613 + L1MD3 LINE L1 5184 5399 -747 8662 171 38 6 chr3 194230552 194232093 -23805065 + MSTB-int LTR MaLR 61 1651 0 2141 179 34 17 chr3 194232094 194232512 -23804646 + MSTB LTR MaLR 2 426 0 2303 226 27 37 chr3 194232529 194233154 -23804004 + L1MC4a LINE L1 6365 6983 -825 1861 232 83 16 chr3 194233202 194233694 -23803464 + MER77 LTR ERV1 77 601 -4 814 233 51 13 chr3 194233749 194233824 -23803334 + L1MD3 LINE L1 7033 7104 -891 1126 201 131 23 chr3 194233824 194234083 -23803075 + AluJo SINE Alu 2 288 -14 814 233 51 13 chr3 194234083 194234243 -23802915 + L1MD3 LINE L1 7104 7277 -718 538 224 78 0 chr3 194234244 194234360 -23802798 + MLT1F1 LTR MaLR 1 125 -442 2529 185 48 2 chr3 194234360 194234878 -23802280 + L1MD3 LINE L1 7410 7951 -44 1278 206 75 123 chr3 194234915 194235032 -23802126 + L1ME1 LINE L1 5476 5597 -569 1432 196 28 7 chr3 194235032 194235317 -23801841 + AluJb SINE Alu 3 293 -19 1278 206 75 123 chr3 194235317 194235802 -23801356 + L1ME1 LINE L1 5597 6049 -117 697 263 50 6 chr3 194235800 194235979 -23801179 - L1PB4 LINE L1 -4 6152 5966 * 189 0 0 0 chr3 194236855 194236876 -23800282 + (CA)n Simple_repeat Simple_repeat 2 22 0 21 0 0 0 chr3 194236937 194236958 -23800200 + AT_rich Low_complexity Low_complexity 1 21 0 290 270 70 30 chr3 194237407 194237507 -23799651 - L2 LINE L2 -14 3299 3196 215 314 0 14 chr3 194238272 194238342 -23798816 + L2 LINE L2 1179 1247 -2067 2068 116 4 0 chr3 194238383 194238660 -23798498 + AluSx SINE Alu 1 278 -34 281 0 82 0 chr3 194238671 194238720 -23798438 + (CAA)n Simple_repeat Simple_repeat 2 54 0 445 233 82 19 chr3 194238803 194238962 -23798196 + HAL1b LINE L1 292 460 -888 296 310 0 18 chr3 194238968 194239081 -23798077 - MER5A DNA MER1_type 0 189 79 547 290 137 19 chr3 194239128 194239390 -23797768 + HAL1b LINE L1 471 763 -585 234 195 149 46 chr3 194239478 194239565 -23797593 - MIR SINE MIR -26 236 141 235 259 302 0 chr3 194239901 194240017 -23797141 - MER5A DNA MER1_type -1 188 38 310 244 26 0 chr3 194240543 194240621 -23796537 + MER116 DNA Mariner 1 80 0 2194 82 41 3 chr3 194240621 194240915 -23796243 - AluSp SINE Alu -7 306 2 260 316 84 0 chr3 194240977 194241072 -23796086 + L2 LINE L2 3206 3308 -5 2477 73 7 0 chr3 194241544 194241847 -23795311 - AluSg SINE Alu -2 308 4 612 206 154 42 chr3 194242060 194242274 -23794884 - MIR SINE MIR -22 240 3 311 301 60 71 chr3 194243224 194243407 -23793751 - L3 LINE CR1 -80 1497 1317 31 0 0 0 chr3 194247440 194247471 -23789687 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr3 194247658 194247680 -23789478 + AT_rich Low_complexity Low_complexity 1 22 0 276 120 0 0 chr3 194248821 194248871 -23788287 + (A)n Simple_repeat Simple_repeat 1 50 0 1606 192 10 10 chr3 194251127 194251418 -23785740 - AluJo SINE Alu -19 293 3 874 125 0 22 chr3 194253454 194253590 -23783568 + FLAM_C SINE Alu 1 133 0 26 0 0 0 chr3 194253590 194253616 -23783542 + AT_rich Low_complexity Low_complexity 1 26 0 441 228 62 26 chr3 194253695 194253888 -23783270 + L1MC/D LINE L1 5264 5463 -2345 2388 121 33 36 chr3 194255479 194255900 -23781258 + L1PB2 LINE L1 5732 6151 0 237 304 115 62 chr3 194256954 194257197 -23779961 + L2 LINE L2 1916 2171 -1143 1894 143 3 0 chr3 194257224 194257510 -23779648 - AluSx SINE Alu -11 301 15 3097 123 18 26 chr3 194257533 194258029 -23779129 - LTR22B LTR ERVK 0 492 1 211 337 36 0 chr3 194258058 194258141 -23779017 + L2 LINE L2 2202 2287 -1027 1736 201 141 22 chr3 194259162 194259583 -23777575 + MLT2B1 LTR ERVL 2 484 -36 324 0 0 0 chr3 194259583 194259619 -23777539 + (TCCA)n Simple_repeat Simple_repeat 3 38 0 1736 201 141 22 chr3 194259619 194259659 -23777499 + MLT2B1 LTR ERVL 484 518 -2 197 309 18 0 chr3 194260619 194260674 -23776484 + MIR SINE MIR 60 115 -147 1499 169 78 29 chr3 194260740 194261084 -23776074 + MER46B DNA MER2_type 1 236 0 888 234 79 11 chr3 194261542 194261807 -23775351 + MER58B DNA MER1_type 56 338 -3 1551 170 15 11 chr3 194261875 194262145 -23775013 + AluJb SINE Alu 30 300 -12 21 0 0 0 chr3 194262740 194262761 -23774397 + AT_rich Low_complexity Low_complexity 1 21 0 662 254 74 33 chr3 194263122 194263366 -23773792 + LTR16A1 LTR ERVL 200 453 -4 242 227 113 10 chr3 194263788 194263885 -23773273 + LTR33A LTR ERVL 378 484 -39 402 125 45 23 chr3 194264718 194264806 -23772352 - L1MB7 LINE L1 0 6184 6095 1032 235 59 67 chr3 194264840 194265723 -23771435 - L1MEc LINE L1 -3222 2993 2010 401 275 37 67 chr3 194265748 194266017 -23771141 - L1MEc LINE L1 -5109 1287 1027 848 232 36 0 chr3 194266067 194266235 -23770923 - Tigger2 DNA MER2_type -2 2716 2543 247 165 38 17 chr3 194266235 194266324 -23770834 + L1ME3A LINE L1 5863 5967 -195 * 595 264 21 37 chr3 194266309 194266500 -23770658 + L1MA10 LINE L1 5984 6332 -2 186 265 73 29 chr3 194266538 194266606 -23770552 + MIR SINE MIR 122 192 -70 511 254 53 63 chr3 194267502 194267691 -23769467 - MIR SINE MIR -56 206 20 184 286 0 0 chr3 194268217 194268266 -23768892 - L2 LINE L2 -9 3263 3215 225 319 35 62 chr3 194271500 194271644 -23765514 - MIR SINE MIR -101 161 22 1091 125 40 6 chr3 194273089 194273265 -23763893 + L1PA13 LINE L1 5979 6160 -3 2041 108 7 0 chr3 194274631 194274909 -23762249 + AluSx SINE Alu 1 280 -32 189 0 0 0 chr3 194274913 194274934 -23762224 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 934 176 98 15 chr3 194274961 194275165 -23761993 - MER58A DNA MER1_type -2 222 2 324 120 0 0 chr3 194275855 194275905 -23761253 + (TG)n Simple_repeat Simple_repeat 2 51 0 22 0 0 0 chr3 194276132 194276154 -23761004 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr3 194276448 194276483 -23760675 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr3 194277349 194277384 -23759774 + GC_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 194277708 194277731 -23759427 + AT_rich Low_complexity Low_complexity 1 23 0 295 289 156 53 chr3 194278438 194278932 -23758226 + L2 LINE L2 2327 2871 -443 209 323 78 72 chr3 194279125 194279292 -23757866 + L2 LINE L2 3102 3269 -3 288 250 142 65 chr3 194280199 194280523 -23756635 - L1ME4a LINE L1 -217 5904 5556 2047 171 43 34 chr3 194281508 194282055 -23755103 + MLT2A2 LTR ERVL 6 554 0 29 28 0 0 chr3 194282119 194282155 -23755003 + AT_rich Low_complexity Low_complexity 1 36 0 374 280 60 54 chr3 194284158 194284326 -23752832 - MER5A DNA MER1_type 0 189 21 1839 111 75 0 chr3 194284666 194284946 -23752212 + AluSp SINE Alu 5 305 -8 274 263 0 26 chr3 194285104 194285180 -23751978 + MER116 DNA Mariner 7 80 0 25 0 0 0 chr3 194287153 194287178 -23749980 + AT_rich Low_complexity Low_complexity 1 25 0 1456 202 42 18 chr3 194287524 194287855 -23749303 - MER58B DNA MER1_type -1 340 2 406 320 139 8 chr3 194288417 194288661 -23748497 - L2 LINE L2 -642 2672 2397 275 354 37 0 chr3 194290865 194290947 -23746211 + MIR3 SINE MIR 82 166 -42 1974 146 0 16 chr3 194291259 194291575 -23745583 + AluSx SINE Alu 1 311 -1 560 22 33 22 chr3 194291575 194291666 -23745492 + (GGAA)n Simple_repeat Simple_repeat 1 92 0 580 209 12 104 chr3 194291743 194291906 -23745252 + MER58D DNA MER1_type 1 148 -238 2039 130 13 0 chr3 194292377 194292684 -23744474 + AluSq SINE Alu 1 311 -2 1586 90 0 0 chr3 194292842 194293042 -23744116 - AluY SINE Alu -13 298 99 2133 210 61 26 chr3 194294053 194294591 -23742567 + Charlie1a DNA MER1_type 13 569 -886 2192 120 0 3 chr3 194294591 194294890 -23742268 + AluSx SINE Alu 1 298 -14 605 176 30 0 chr3 194294908 194295039 -23742119 + Charlie1a DNA MER1_type 1321 1455 0 218 254 0 32 chr3 194295403 194295466 -23741692 - L2 LINE L2 -2 3311 3251 1348 181 84 99 chr3 194296829 194297293 -23739865 - MLT1C LTR MaLR 0 467 11 709 148 94 47 chr3 194297601 194297748 -23739410 - MLT1B LTR MaLR -25 442 289 1334 199 74 71 chr3 194297748 194298110 -23739048 - MLT1A1 LTR MaLR 0 396 3 1155 178 66 54 chr3 194298112 194298371 -23738787 - MLT1B LTR MaLR -158 232 1 453 317 47 39 chr3 194298652 194298945 -23738213 + MLT1I LTR MaLR 93 359 -50 238 235 63 86 chr3 194299673 194299833 -23737325 + MIR SINE MIR 16 170 -63 237 128 0 0 chr3 194299959 194299998 -23737160 + U5 snRNA snRNA 5 43 -73 1478 145 64 54 chr3 194300120 194300416 -23736742 + AluJo SINE Alu 1 299 -13 2388 70 0 17 chr3 194300473 194300774 -23736384 + AluY SINE Alu 1 296 -15 230 179 0 0 chr3 194300775 194300814 -23736344 + L1MC4 LINE L1 6920 6958 -1084 296 223 47 109 chr3 194300878 194300960 -23736198 - L3 LINE CR1 -598 979 893 2403 74 0 7 chr3 194300960 194301259 -23735899 + AluY SINE Alu 1 297 -14 296 223 47 109 chr3 194301259 194301369 -23735789 - L3 LINE CR1 -684 893 799 464 228 14 11 chr3 194301678 194301825 -23735333 + MIR3 SINE MIR 3 202 -6 1344 205 44 24 chr3 194303278 194303571 -23733587 + AluJb SINE Alu 1 299 -3 21 36 0 0 chr3 194303653 194303681 -23733477 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr3 194304549 194304578 -23732580 + (TA)n Simple_repeat Simple_repeat 2 30 0 1785 93 4 12 chr3 194304583 194304831 -23732327 - AluY SINE Alu -29 282 37 210 37 0 0 chr3 194305576 194305603 -23731555 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 2417 90 0 0 chr3 194305618 194305928 -23731230 + AluSg SINE Alu 1 310 0 324 348 61 1 chr3 194305935 194306135 -23731023 - L1ME2 LINE L1 -19 6145 5949 602 272 40 13 chr3 194306170 194306398 -23730760 - L1ME2 LINE L1 -204 5960 5727 267 235 51 10 chr3 194306394 194306492 -23730666 - L1ME LINE L1 -5651 419 318 * 459 273 66 35 chr3 194306550 194306748 -23730410 - L1ME LINE L1 -5843 227 24 305 341 92 6 chr3 194306884 194307057 -23730101 + L1ME LINE L1 286 473 -5597 339 309 12 36 chr3 194307083 194307248 -23729910 + L1ME LINE L1 407 567 -5503 234 225 14 42 chr3 194307265 194307336 -23729822 + L1ME LINE L1 660 728 -5342 224 287 93 37 chr3 194307737 194307845 -23729313 + MIR SINE MIR 51 164 -98 1140 173 66 19 chr3 194307930 194308218 -23728940 - MER33 DNA MER1_type -30 294 1 1782 173 147 13 chr3 194308537 194308925 -23728233 - Tigger2 DNA MER2_type 0 2718 2279 349 183 0 0 chr3 194308930 194308990 -23728168 + MER8 DNA MER2_type 179 238 -1 25 0 0 0 chr3 194309028 194309053 -23728105 + AT_rich Low_complexity Low_complexity 1 25 0 1977 159 38 6 chr3 194310001 194310347 -23726811 + MER46B DNA MER2_type 5 236 0 183 80 0 0 chr3 194310521 194310546 -23726612 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 387 266 101 12 chr3 194311203 194311372 -23725786 + LTR16C LTR ERVL 210 393 -98 521 247 66 70 chr3 194311619 194311862 -23725296 + L1MC5 LINE L1 5342 5583 -2225 400 200 0 24 chr3 194311916 194312001 -23725157 + L1MC5 LINE L1 5783 5865 -1943 22 56 0 0 chr3 194312135 194312171 -23724987 + AT_rich Low_complexity Low_complexity 1 36 0 1557 156 3 84 chr3 194312209 194312351 -23724807 + AluJo SINE Alu 3 155 -157 1736 159 35 0 chr3 194312351 194312634 -23724524 + AluSc SINE Alu 1 293 -16 1557 156 3 84 chr3 194312634 194312825 -23724333 + AluJo SINE Alu 155 309 -3 223 229 0 57 chr3 194312825 194312895 -23724263 + GA-rich Low_complexity Low_complexity 5 70 0 28 71 0 0 chr3 194313045 194313101 -23724057 + AT_rich Low_complexity Low_complexity 1 56 0 1367 192 45 116 chr3 194313235 194313840 -23723318 + L1MC5 LINE L1 6709 7270 -691 886 196 117 0 chr3 194313841 194314020 -23723138 - MER46A DNA MER2_type -5 231 32 456 231 60 0 chr3 194314132 194314249 -23722909 + L1MC5 LINE L1 7322 7445 -516 1483 148 62 62 chr3 194314396 194314735 -23722423 + L1MB2 LINE L1 5446 5784 -387 6068 151 13 13 chr3 194314736 194316790 -23720368 + L1PB1 LINE L1 4104 6151 0 936 192 68 43 chr3 194316787 194317085 -23720073 + L1MB2 LINE L1 5754 6012 -159 * 434 152 38 0 chr3 194317096 194317175 -23719983 + AluS SINE Alu 220 301 -11 2098 91 42 11 chr3 194317306 194317593 -23719565 - AluSx SINE Alu -16 296 1 618 132 18 0 chr3 194317710 194317824 -23719334 + L1MA4 LINE L1 6173 6288 -12 231 125 0 0 chr3 194318124 194318164 -23718994 + (CA)n Simple_repeat Simple_repeat 2 41 0 284 264 23 11 chr3 194318722 194318809 -23718349 + GA-rich Low_complexity Low_complexity 2 89 0 2223 99 0 16 chr3 194319735 194320048 -23717110 + AluSq SINE Alu 1 308 -5 32 67 0 0 chr3 194320096 194320156 -23717002 + AT_rich Low_complexity Low_complexity 1 60 0 2277 95 0 0 chr3 194320895 194321199 -23715959 + AluSq SINE Alu 1 304 -9 21 0 0 0 chr3 194321707 194321728 -23715430 + AT_rich Low_complexity Low_complexity 1 21 0 1639 163 27 14 chr3 194321770 194322064 -23715094 + AluJb SINE Alu 1 298 -14 298 231 82 55 chr3 194322130 194322239 -23714919 - Charlie7 DNA MER1_type -1882 730 613 2123 128 0 3 chr3 194322239 194322535 -23714623 - AluSx SINE Alu -17 295 1 298 231 82 55 chr3 194322535 194322607 -23714551 - Charlie7 DNA MER1_type -1999 613 544 2197 100 13 6 chr3 194322656 194322967 -23714191 - AluSp SINE Alu 0 313 1 253 260 115 10 chr3 194323104 194323200 -23713958 - Charlie7 DNA MER1_type -2193 419 314 1135 193 88 17 chr3 194323204 194323575 -23713583 + MSTC LTR MaLR 1 428 0 304 302 123 19 chr3 194323591 194323803 -23713355 - Charlie7 DNA MER1_type -2295 317 84 21 36 0 0 chr3 194325596 194325624 -23711534 + AT_rich Low_complexity Low_complexity 1 28 0 1985 142 0 0 chr3 194325666 194325954 -23711204 + AluSx SINE Alu 24 311 -1 191 170 110 150 chr3 194327520 194327593 -23709565 - MER5B DNA MER1_type -82 96 26 186 103 0 0 chr3 194327593 194327622 -23709536 + (TG)n Simple_repeat Simple_repeat 1 29 0 191 170 110 150 chr3 194327622 194327648 -23709510 - MER5B DNA MER1_type -151 27 1 225 256 0 0 chr3 194328233 194328276 -23708882 - MER91A DNA MER1_type 0 196 154 362 214 89 60 chr3 194328320 194328452 -23708706 + MIR SINE MIR 16 159 -49 363 276 155 0 chr3 194328521 194328637 -23708521 - MER91A DNA MER1_type -43 153 20 24 53 0 0 chr3 194328725 194328763 -23708395 + AT_rich Low_complexity Low_complexity 1 38 0 748 231 10 40 chr3 194329690 194329889 -23707269 - MER58A DNA MER1_type -28 196 4 25 83 0 0 chr3 194330945 194331005 -23706153 + AT_rich Low_complexity Low_complexity 1 60 0 194 220 125 135 chr3 194331440 194331640 -23705518 - L2 LINE L2 -67 3246 3049 1935 116 0 82 chr3 194333081 194333409 -23703749 - AluSx SINE Alu -11 301 1 210 315 69 31 chr3 194333667 194333797 -23703361 + MIR3 SINE MIR 48 182 -26 306 0 0 0 chr3 194333885 194333919 -23703239 + (TA)n Simple_repeat Simple_repeat 2 35 0 1988 151 0 0 chr3 194333919 194334218 -23702940 - AluSx SINE Alu -13 299 1 1897 96 39 36 chr3 194334534 194334815 -23702343 + AluSg SINE Alu 2 283 -27 180 0 0 0 chr3 194334815 194334835 -23702323 + (CA)n Simple_repeat Simple_repeat 2 21 0 2132 182 35 27 chr3 194334835 194335357 -23701801 + L1MA8 LINE L1 4805 5330 -816 813 199 0 0 chr3 194335359 194335495 -23701663 + AluJo SINE Alu 1 136 -176 1517 129 89 31 chr3 194335501 194335827 -23701331 + L1MA8 LINE L1 5313 5657 -643 709 190 69 28 chr3 194335805 194336021 -23701137 + L1MA8 LINE L1 6003 6227 -64 * 2013 127 0 0 chr3 194337364 194337640 -23699518 - AluSx SINE Alu -13 299 24 21 36 0 0 chr3 194337682 194337710 -23699448 + AT_rich Low_complexity Low_complexity 1 28 0 278 287 100 20 chr3 194339507 194339657 -23697501 + Charlie7 DNA MER1_type 84 245 -2367 1150 186 95 25 chr3 194339735 194340107 -23697051 - MSTC LTR MaLR 0 428 1 253 260 115 10 chr3 194340111 194340207 -23696951 + Charlie7 DNA MER1_type 314 419 -2193 2165 100 13 10 chr3 194340343 194340654 -23696504 + AluSp SINE Alu 1 312 -1 292 229 82 60 chr3 194340703 194340775 -23696383 + Charlie7 DNA MER1_type 544 613 -1999 2103 129 0 3 chr3 194340775 194341069 -23696089 + AluSx SINE Alu 1 293 -19 292 229 82 60 chr3 194341069 194341179 -23695979 + Charlie7 DNA MER1_type 613 730 -1882 1639 163 27 14 chr3 194341245 194341539 -23695619 - AluJb SINE Alu -14 298 1 21 0 0 0 chr3 194341581 194341602 -23695556 + AT_rich Low_complexity Low_complexity 1 21 0 2277 95 0 0 chr3 194342110 194342414 -23694744 - AluSq SINE Alu -9 304 1 2205 110 0 7 chr3 194342421 194342721 -23694437 - AluSx SINE Alu -14 298 1 253 209 30 0 chr3 194343151 194343218 -23693940 + MLT1J2 LTR MaLR 354 422 -28 181 327 96 29 chr3 194343377 194343481 -23693677 - L2 LINE L2 -2 3270 3160 708 252 173 10 chr3 194343491 194343724 -23693434 + MIR SINE MIR 1 261 -1 306 0 0 0 chr3 194343939 194343973 -23693185 + (TC)n Simple_repeat Simple_repeat 2 35 0 243 0 0 0 chr3 194343972 194343999 -23693159 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 2285 100 3 0 chr3 194343999 194344298 -23692860 - AluSx SINE Alu -12 300 1 2193 95 0 0 chr3 194344438 194344723 -23692435 - AluSx SINE Alu -27 285 1 250 229 0 0 chr3 194344884 194344932 -23692226 - MIR SINE MIR -164 98 51 308 228 11 33 chr3 194345664 194345756 -23691402 - L1ME4a LINE L1 -81 6040 5951 374 203 8 42 chr3 194345795 194345913 -23691245 - L1ME4a LINE L1 -297 5824 5711 2153 81 0 4 chr3 194346001 194346308 -23690850 - AluSc SINE Alu 0 314 9 207 323 229 10 chr3 194346417 194346513 -23690645 + MIR3 SINE MIR 43 159 -49 241 390 48 0 chr3 194346538 194346684 -23690474 + MER5B DNA MER1_type 25 177 -1 2206 91 0 18 chr3 194346817 194347103 -23690055 + AluSg SINE Alu 15 295 -15 2134 97 3 10 chr3 194347153 194347443 -23689715 + AluSq SINE Alu 1 288 -25 1836 113 18 7 chr3 194347449 194347732 -23689426 + AluSx SINE Alu 16 301 -11 2247 106 3 7 chr3 194348300 194348602 -23688556 - AluSx SINE Alu -11 301 1 2398 75 0 3 chr3 194348742 194349037 -23688121 - AluSc SINE Alu -15 294 1 234 0 0 0 chr3 194349879 194349905 -23687253 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2070 102 22 0 chr3 194349906 194350180 -23686978 - AluSx SINE Alu -32 280 1 452 297 81 7 chr3 194350207 194350355 -23686803 - MLT1J LTR MaLR -251 260 102 1592 201 10 7 chr3 194350390 194350673 -23686485 + AluJo SINE Alu 1 287 -25 270 0 0 0 chr3 194350673 194350703 -23686455 + (CA)n Simple_repeat Simple_repeat 2 31 0 1592 201 10 7 chr3 194350703 194350722 -23686436 + AluJo SINE Alu 287 304 -8 233 300 117 0 chr3 194351187 194351307 -23685851 - L2 LINE L2 -584 2730 2597 325 231 97 131 chr3 194351310 194351392 -23685766 - HAL1 LINE L1 -851 1656 1573 646 208 23 0 chr3 194351392 194351522 -23685636 + FLAM_A SINE Alu 1 133 0 325 231 97 131 chr3 194351522 194351730 -23685428 - HAL1 LINE L1 -934 1573 1384 2207 106 0 0 chr3 194351730 194352022 -23685136 + AluSx SINE Alu 4 295 -17 325 231 97 131 chr3 194352022 194352172 -23684986 - HAL1 LINE L1 -1123 1384 1230 394 276 12 31 chr3 194352398 194352420 -23684738 - L1MA10 LINE L1 -3 6331 6310 964 251 55 31 chr3 194352420 194352746 -23684412 - L1ME3 LINE L1 -10 6152 5819 749 71 10 0 chr3 194352746 194352844 -23684314 - AluSp/q SINE Alu -11 302 204 510 168 0 30 chr3 194352850 194352974 -23684184 - L1ME1 LINE L1 -340 5826 5718 278 196 0 0 chr3 194352977 194353028 -23684130 + MER66B LTR ERV1 295 345 -141 2167 127 3 0 chr3 194353058 194353357 -23683801 + AluSp SINE Alu 1 300 -13 2930 228 136 47 chr3 194353357 194353715 -23683443 - L1ME1 LINE L1 -693 5471 5146 2286 85 14 0 chr3 194353715 194354009 -23683149 - AluY SINE Alu -13 298 1 2930 228 136 47 chr3 194354009 194354266 -23682892 - L1ME1 LINE L1 -1018 5146 4913 2106 116 7 23 chr3 194354266 194354576 -23682582 - AluSx SINE Alu -7 305 1 2930 228 136 47 chr3 194354576 194354909 -23682249 - L1ME1 LINE L1 -1251 4913 4611 2535 77 0 0 chr3 194354909 194355220 -23681938 - AluY SINE Alu 0 311 1 2930 228 136 47 chr3 194355220 194355966 -23681192 - L1ME1 LINE L1 -1553 4611 3622 382 92 0 31 chr3 194356131 194356196 -23680962 + AluS SINE Alu 27 89 -214 2129 108 10 7 chr3 194356806 194357102 -23680056 + AluSx SINE Alu 1 297 -15 1769 154 17 7 chr3 194357613 194357905 -23679253 + AluSx SINE Alu 1 295 -17 1663 166 21 25 chr3 194358014 194358330 -23678828 + AluJo SINE Alu 1 315 0 500 148 0 12 chr3 194359090 194359171 -23677987 + AluSq SINE Alu 1 80 -232 2327 74 0 3 chr3 194359171 194359467 -23677691 + AluY SINE Alu 1 295 -16 1685 107 21 4 chr3 194359467 194359698 -23677460 + AluSq SINE Alu 68 304 -9 584 308 144 53 chr3 194360201 194360726 -23676432 - L2 LINE L2 -4 3309 2741 665 81 0 0 chr3 194361034 194361120 -23676038 + AluSp SINE Alu 25 110 -203 2367 88 3 0 chr3 194361281 194361587 -23675571 + AluSq SINE Alu 1 307 -6 188 211 53 88 chr3 194361954 194362011 -23675147 - MIR SINE MIR -65 143 89 2082 117 24 3 chr3 194362628 194362926 -23674232 + AluSq SINE Alu 2 305 -8 276 30 0 0 chr3 194362979 194363012 -23674146 + (CA)n Simple_repeat Simple_repeat 2 34 0 285 87 0 0 chr3 194364091 194364137 -23673021 - MADE1 DNA Mariner -34 46 1 23 0 0 0 chr3 194364250 194364273 -23672885 + AT_rich Low_complexity Low_complexity 1 23 0 2407 86 0 0 chr3 194364277 194364580 -23672578 + AluSq SINE Alu 1 303 -10 1685 166 0 7 chr3 194364681 194364959 -23672199 - AluJb SINE Alu -36 276 1 1343 187 103 0 chr3 194365728 194365990 -23671168 + AluJb SINE Alu 3 291 -21 2203 126 0 10 chr3 194366727 194367037 -23670121 - AluSx SINE Alu -5 307 1 448 143 0 0 chr3 194367037 194367107 -23670051 - AluSx SINE Alu -15 296 227 927 114 8 0 chr3 194367114 194367237 -23669921 - AluSx SINE Alu -138 174 51 244 292 15 0 chr3 194368632 194368697 -23668461 + MLT1J LTR MaLR 109 174 -337 1882 161 3 3 chr3 194368699 194368998 -23668160 + AluJb SINE Alu 1 299 -13 327 278 166 19 chr3 194369075 194369280 -23667878 + MLT1J LTR MaLR 254 488 -23 204 40 0 0 chr3 194369594 194369619 -23667539 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1540 223 120 57 chr3 194369757 194370440 -23666718 - MER50 LTR ERV1 0 734 9 3440 126 99 67 chr3 194370531 194371035 -23666123 + LTR8A LTR ERV1 1 536 -191 1668 145 49 33 chr3 194371035 194371339 -23665819 + AluJb SINE Alu 1 309 -3 3440 126 99 67 chr3 194371339 194371538 -23665620 + LTR8A LTR ERV1 536 727 0 2392 88 0 3 chr3 194372621 194372927 -23664231 - AluSg SINE Alu -5 305 1 1240 253 26 14 chr3 194373031 194373379 -23663779 - L1ME3A LINE L1 -144 6026 5675 2124 125 7 0 chr3 194373513 194373810 -23663348 - AluSq SINE Alu -14 299 1 1350 205 65 17 chr3 194373970 194374368 -23662790 - L1MB2 LINE L1 -143 6028 5528 2399 58 41 0 chr3 194374378 194374669 -23662489 - AluYa5 SINE Alu -7 304 2 2398 81 0 3 chr3 194374766 194375063 -23662095 - AluSx SINE Alu -14 298 3 593 277 106 63 chr3 194375133 194375437 -23661721 - MLT1J1 LTR MaLR -70 380 63 286 248 198 10 chr3 194376625 194376726 -23660432 - MIR SINE MIR -129 133 14 2152 112 23 0 chr3 194377554 194377857 -23659301 - AluSq SINE Alu -3 310 1 367 231 189 35 chr3 194378143 194378203 -23658955 - MLT1J2 LTR MaLR -125 325 276 637 196 113 57 chr3 194378203 194378240 -23658918 - MER3 DNA MER1_type 0 209 176 2085 103 11 0 chr3 194378240 194378544 -23658614 - AluSx SINE Alu 0 307 1 637 196 113 57 chr3 194378544 194378699 -23658459 - MER3 DNA MER1_type -33 176 5 367 231 189 35 chr3 194378699 194378852 -23658306 - MLT1J2 LTR MaLR -174 276 75 204 304 14 94 chr3 194378941 194379079 -23658079 + MIR SINE MIR 15 141 -121 1657 172 6 35 chr3 194379092 194379406 -23657752 - AluJo SINE Alu -7 305 1 186 307 23 23 chr3 194379409 194379497 -23657661 + MIR SINE MIR 125 212 -50 258 81 0 0 chr3 194379509 194379546 -23657612 + (CA)n Simple_repeat Simple_repeat 2 38 0 1970 122 52 124 chr3 194379546 194379720 -23657438 + Tigger3b DNA MER2_type 3 188 -2840 912 127 0 0 chr3 194379720 194379838 -23657320 + FLAM_C SINE Alu 1 118 -15 1970 122 52 124 chr3 194379838 194379975 -23657183 + Tigger3b DNA MER2_type 188 277 -2751 2484 63 10 0 chr3 194379975 194380275 -23656883 - AluY SINE Alu -8 303 1 1970 122 52 124 chr3 194380275 194380389 -23656769 + Tigger3b DNA MER2_type 277 398 -833 231 376 0 0 chr3 194380563 194380648 -23656510 + MIR SINE MIR 14 98 -164 4732 128 36 31 chr3 194380694 194381040 -23656118 + Tigger3b DNA MER2_type 418 761 -2268 2438 90 3 0 chr3 194381040 194381352 -23655806 - AluSp SINE Alu 0 313 1 4732 128 36 31 chr3 194381352 194381532 -23655626 + Tigger3b DNA MER2_type 761 939 -2090 2431 96 0 0 chr3 194381532 194381845 -23655313 - AluSq SINE Alu 0 313 1 4732 128 36 31 chr3 194381845 194382127 -23655031 + Tigger3b DNA MER2_type 939 1231 -1 636 241 228 37 chr3 194382156 194382450 -23654708 + MLT1H LTR MaLR 1 350 -199 360 43 0 0 chr3 194382645 194382703 -23654455 + (CA)n Simple_repeat Simple_repeat 1 104 0 360 43 0 0 chr3 194382703 194382749 -23654409 + (CA)n Simple_repeat Simple_repeat 1 46 0 973 192 150 0 chr3 194382893 194383086 -23654072 - MER58A DNA MER1_type -1 223 2 783 256 78 4 chr3 194384617 194384847 -23652311 + MIR SINE MIR 16 262 0 316 196 0 0 chr3 194384851 194384902 -23652256 - L1ME4a LINE L1 -86 6035 5985 1813 178 3 0 chr3 194385457 194385749 -23651409 + AluJb SINE Alu 1 293 -19 561 110 0 0 chr3 194386157 194386230 -23650928 + LTR32 LTR ERVL 16 88 -383 * 2687 161 31 7 chr3 194386210 194386656 -23650502 + LTR32 LTR ERVL 15 471 0 1122 130 0 0 chr3 194389390 194389544 -23647614 - AluSg/x SINE Alu -22 288 135 27 29 0 0 chr3 194389548 194389582 -23647576 + AT_rich Low_complexity Low_complexity 1 34 0 408 37 116 18 chr3 194389582 194389746 -23647412 + (TA)n Simple_repeat Simple_repeat 1 180 0 354 161 57 8 chr3 194389747 194389871 -23647287 + (TTATA)n Simple_repeat Simple_repeat 5 134 0 228 93 80 0 chr3 194389964 194390039 -23647119 + (TA)n Simple_repeat Simple_repeat 2 82 0 2830 174 23 23 chr3 194390374 194390785 -23646373 + MER34 LTR ERV1 27 441 -101 2148 108 0 11 chr3 194390785 194391121 -23646037 + AluSx SINE Alu 1 333 0 2830 174 23 23 chr3 194391121 194391224 -23645934 + MER34 LTR ERV1 440 542 0 504 310 113 24 chr3 194391359 194391689 -23645469 + L2 LINE L2 2657 3011 -261 281 205 277 18 chr3 194391732 194391844 -23645314 + LTR40a LTR ERVL 1 141 -378 736 282 46 19 chr3 194392004 194392263 -23644895 + LTR40b LTR ERVL 196 461 -1 357 250 128 18 chr3 194392315 194392479 -23644679 + L2 LINE L2 3123 3304 -9 199 311 185 7 chr3 194392486 194392637 -23644521 - L2 LINE L2 -190 3082 2905 214 196 20 0 chr3 194393055 194393106 -23644052 + A-rich Low_complexity Low_complexity 2 53 0 332 262 24 24 chr3 194393927 194394053 -23643105 - MLT1J LTR MaLR -2 509 384 2188 120 0 19 chr3 194394087 194394403 -23642755 - AluSg SINE Alu 0 310 1 2250 104 13 0 chr3 194394403 194394702 -23642456 - AluSx SINE Alu -9 303 1 230 259 95 78 chr3 194394706 194394822 -23642336 + MLT1G3 LTR MaLR 10 127 -468 524 257 77 8 chr3 194394887 194395030 -23642128 + MLT1G3 LTR MaLR 195 414 -181 316 210 140 15 chr3 194395006 194395164 -23641994 + MLT1G1 LTR MaLR 353 595 0 * 1206 306 37 11 chr3 194395164 194395534 -23641624 - MLT1J LTR MaLR -127 384 5 2326 103 0 6 chr3 194396170 194396481 -23640677 + AluSg SINE Alu 1 309 -1 465 315 101 14 chr3 194397551 194397770 -23639388 - MIR SINE MIR -18 244 7 244 351 61 12 chr3 194397965 194398130 -23639028 + LTR16C LTR ERVL 3 175 -316 2210 82 21 0 chr3 194398139 194398418 -23638740 - AluSc SINE Alu -24 285 1 1149 188 41 80 chr3 194398457 194398585 -23638573 + LTR16C LTR ERVL 188 319 -172 2350 53 14 0 chr3 194398585 194398866 -23638292 + L1PA5 LINE L1 5870 6154 0 1149 188 41 80 chr3 194398866 194399051 -23638107 + LTR16C LTR ERVL 319 489 -2 647 226 21 70 chr3 194400341 194400527 -23636631 - MER5B DNA MER1_type -1 177 1 2163 117 0 0 chr3 194400802 194401108 -23636050 + AluSx SINE Alu 1 306 0 2077 172 56 21 chr3 194403664 194404041 -23633117 + MLT1B LTR MaLR 1 390 0 360 329 20 20 chr3 194404330 194404482 -23632676 + MIR SINE MIR 13 164 -98 2330 83 0 32 chr3 194405170 194405484 -23631674 + AluSq SINE Alu 1 304 -9 390 263 152 23 chr3 194406040 194406390 -23630768 + L1 LINE L1 4744 5132 -1014 679 191 52 0 chr3 194406393 194406508 -23630650 + FLAM_A SINE Alu 1 121 -12 1658 186 3 16 chr3 194406575 194406887 -23630271 + AluJb SINE Alu 3 310 -2 231 36 0 0 chr3 194407332 194407360 -23629798 + (TG)n Simple_repeat Simple_repeat 2 29 0 39 68 0 0 chr3 194407492 194407566 -23629592 + AT_rich Low_complexity Low_complexity 1 74 0 2283 115 0 0 chr3 194408068 194408380 -23628778 + AluSq SINE Alu 1 312 -1 1213 147 50 5 chr3 194408573 194408791 -23628367 - AluSg/x SINE Alu -12 300 73 1332 165 9 4 chr3 194458792 194459022 -23578136 - L1 LINE L1 -2146 4000 3770 8791 50 2 11 chr3 194459026 194460102 -23577056 - MER11C LTR ERVK -5 1066 1 1000 173 0 5 chr3 194460102 194460287 -23576871 - L1 LINE L1 -2371 3775 3592 270 229 0 0 chr3 194460283 194460331 -23576827 + L1PB1 LINE L1 2632 2679 -3467 * 886 132 0 0 chr3 194460327 194460463 -23576695 + L1PB1 LINE L1 3686 3821 -2325 369 0 0 0 chr3 194460572 194460613 -23576545 + (CA)n Simple_repeat Simple_repeat 2 42 0 4307 194 23 18 chr3 194460618 194461473 -23575685 + L1M1 LINE L1 88 947 -6618 6524 94 7 14 chr3 194461597 194462499 -23574659 + THE1B-int LTR MaLR 673 1567 -13 2500 123 14 22 chr3 194462505 194462870 -23574288 + THE1B LTR MaLR 1 362 -2 6801 136 15 2 chr3 194462874 194464559 -23572599 + L1PB1 LINE L1 4446 6150 -1 417 196 70 101 chr3 194464574 194464732 -23572426 + L1MA9 LINE L1 6019 6264 -48 1123 248 101 47 chr3 194465653 194466166 -23570992 - MLT1H LTR MaLR -8 541 1 504 298 44 49 chr3 194466191 194466396 -23570762 - L2 LINE L2 -3 3269 3066 607 328 46 60 chr3 194467309 194467611 -23569547 - L2 LINE L2 -2 3270 2973 1802 293 67 54 chr3 194467630 194468472 -23568686 + HAL1 LINE L1 57 914 -1593 1865 150 3 0 chr3 194468472 194468758 -23568400 + AluJb SINE Alu 11 297 -15 1802 293 67 54 chr3 194468758 194468845 -23568313 + HAL1 LINE L1 914 998 -1509 230 234 0 0 chr3 194468858 194468905 -23568253 + L2 LINE L2 2421 2467 -847 747 289 90 52 chr3 194468905 194469354 -23567804 + L2 LINE L2 2637 3068 -245 333 0 0 0 chr3 194469354 194469391 -23567767 + (CA)n Simple_repeat Simple_repeat 1 37 0 747 289 90 52 chr3 194469391 194469563 -23567595 + L2 LINE L2 3068 3280 -33 2037 166 59 68 chr3 194469563 194470034 -23567124 - MLT1C LTR MaLR 0 467 1 747 289 90 52 chr3 194470034 194470058 -23567100 + L2 LINE L2 3280 3302 -11 252 194 0 0 chr3 194470078 194470138 -23567020 + FLAM_A SINE Alu 81 133 0 2137 119 3 0 chr3 194470184 194470478 -23566680 + AluSx SINE Alu 2 296 -16 458 241 69 50 chr3 194470517 194470779 -23566379 + HAL1 LINE L1 1066 1332 -1175 270 318 45 17 chr3 194470809 194470985 -23566173 + HAL1 LINE L1 1942 2122 -385 625 226 56 69 chr3 194470987 194471292 -23565866 + HAL1 LINE L1 2167 2467 -40 501 265 73 92 chr3 194472084 194472442 -23564716 - MLT1H LTR MaLR -1 548 198 1370 118 0 20 chr3 194472958 194473153 -23564005 + AluY SINE Alu 104 294 -17 228 330 143 0 chr3 194473813 194473925 -23563233 - L2 LINE L2 -6 3266 3139 304 298 35 77 chr3 194475886 194476198 -23560960 - MLT1J LTR MaLR 0 511 213 2596 48 9 0 chr3 194476353 194476684 -23560474 + L1PA2 LINE L1 5819 6152 -3 427 111 0 0 chr3 194476903 194476975 -23560183 - L1MA3 LINE L1 0 6305 6234 1069 159 14 5 chr3 194476975 194477183 -23559975 + L1MA3 LINE L1 6022 6231 -74 200 287 221 7 chr3 194478279 194478415 -23558743 - L2 LINE L2 -8 3305 3141 2256 118 3 0 chr3 194478584 194478889 -23558269 + AluSx SINE Alu 7 312 0 237 290 72 0 chr3 194479210 194479279 -23557879 + MIR SINE MIR 42 115 -93 789 247 41 14 chr3 194479539 194479978 -23557180 - L1ME LINE L1 -708 5462 5010 2058 157 36 17 chr3 194480061 194480418 -23556740 + THE1B LTR MaLR 1 364 0 23 0 0 0 chr3 194480513 194480536 -23556622 + AT_rich Low_complexity Low_complexity 1 23 0 406 154 44 11 chr3 194480572 194480663 -23556495 - L1MA9 LINE L1 0 6312 6219 180 111 0 0 chr3 194480663 194480690 -23556468 + (TATATG)n Simple_repeat Simple_repeat 3 29 0 262 151 75 0 chr3 194480696 194480749 -23556409 - L1M2 LINE L1 -515 5776 5720 2934 161 38 5 chr3 194480749 194481700 -23555458 + L1M2 LINE L1 4747 5727 -564 1673 218 26 42 chr3 194481895 194482275 -23554883 + MLT2B3 LTR ERVL 181 554 0 355 284 0 0 chr3 194482299 194482415 -23554743 - L1ME LINE L1 -1302 4844 4729 242 318 0 0 chr3 194484084 194484150 -23553008 + MIR3 SINE MIR 132 197 -11 1782 176 10 0 chr3 194484222 194484518 -23552640 + AluJo SINE Alu 1 299 -13 246 317 24 12 chr3 194484547 194484629 -23552529 - L2 LINE L2 -4 3268 3186 2173 142 5 3 chr3 194484639 194485295 -23551863 - L1PA13 LINE L1 -557 5604 4947 3377 134 11 14 chr3 194485295 194485833 -23551325 + L1PA13 LINE L1 5602 6157 -6 507 355 125 31 chr3 194485844 194486389 -23550769 - L2 LINE L2 -98 3174 2579 673 320 76 21 chr3 194486404 194486785 -23550373 + L2 LINE L2 1906 2307 -1007 210 91 0 0 chr3 194486849 194486882 -23550276 + (TG)n Simple_repeat Simple_repeat 2 34 0 283 367 107 54 chr3 194487226 194487667 -23549491 + L2 LINE L2 2804 3267 -5 186 266 47 16 chr3 194487671 194487735 -23549423 - L2 LINE L2 -1845 1469 1404 231 346 37 9 chr3 194487925 194488032 -23549126 + MIR SINE MIR 117 226 -36 195 309 147 40 chr3 194488213 194488465 -23548693 + L2 LINE L2 2817 3095 -177 594 310 84 3 chr3 194489545 194489900 -23547258 + L1ME4a LINE L1 5559 5942 -179 1864 136 47 4 chr3 194490347 194490626 -23546532 + AluJb SINE Alu 10 300 -12 238 276 117 56 chr3 194490959 194491173 -23545985 + L2 LINE L2 2986 3212 -101 376 218 0 36 chr3 194492115 194492225 -23544933 - MER31-int LTR ERV1 -467 4469 4364 637 217 19 52 chr3 194492486 194492698 -23544460 - MER31-int LTR ERV1 -1914 3022 2818 323 188 0 0 chr3 194492890 194492954 -23544204 - MER92C LTR ERV1 0 554 491 944 184 37 25 chr3 194493112 194493459 -23543699 + MER31B LTR ERV1 1 514 0 471 194 19 10 chr3 194493459 194493552 -23543606 - MER92B LTR ERV1 -542 94 1 216 0 0 0 chr3 194494289 194494313 -23542845 + (CA)n Simple_repeat Simple_repeat 2 25 0 448 217 167 36 chr3 194495612 194495750 -23541408 + MER5B DNA MER1_type 7 162 -16 2166 118 3 3 chr3 194495894 194496199 -23540959 + AluSq SINE Alu 3 307 -6 539 242 129 31 chr3 194496212 194496406 -23540752 - Charlie8 DNA MER1_type -2204 213 1 1086 159 26 23 chr3 194497945 194498275 -23538883 + MLT2A2 LTR ERVL 222 453 0 973 225 10 0 chr3 194499011 194499211 -23537947 + MER77 LTR ERV1 1 202 -403 1089 237 95 0 chr3 194499278 194499552 -23537606 + MER77 LTR ERV1 306 605 0 564 275 106 64 chr3 194499694 194500291 -23536867 + L1MC4 LINE L1 7287 7908 -134 219 222 0 0 chr3 194500405 194500450 -23536708 + GA-rich Low_complexity Low_complexity 1 45 0 711 184 0 0 chr3 194500578 194500719 -23536439 + GA-rich Low_complexity Low_complexity 2 142 0 223 178 22 0 chr3 194500837 194500882 -23536276 + (CA)n Simple_repeat Simple_repeat 2 47 0 2370 108 0 0 chr3 194500988 194501295 -23535863 - AluSx SINE Alu -1 311 5 251 273 58 33 chr3 194501835 194501956 -23535202 + MIR SINE MIR 20 143 -65 235 387 47 0 chr3 194502750 194502856 -23534302 + MIR SINE MIR 20 130 -132 243 330 68 68 chr3 194503743 194503861 -23533297 - L2 LINE L2 -15 3257 3140 218 325 98 24 chr3 194505152 194505398 -23531760 - L2 LINE L2 -246 3067 2804 21 0 0 0 chr3 194505524 194505545 -23531613 + AT_rich Low_complexity Low_complexity 1 21 0 207 338 70 19 chr3 194505817 194505974 -23531184 + L2 LINE L2 2799 2963 -351 363 289 128 6 chr3 194507008 194507164 -23529994 + MIR SINE MIR 56 230 -32 1026 309 265 24 chr3 194508035 194509042 -23528116 - L3 LINE CR1 -60 1517 268 314 235 60 60 chr3 194509053 194509219 -23527939 + L1MC5 LINE L1 7676 7841 -120 289 198 39 55 chr3 194510008 194510190 -23526968 + (CCCCAA)n Simple_repeat Simple_repeat 1 179 0 267 243 178 9 chr3 194510824 194510931 -23526227 - FLAM_A SINE Alu -4 129 5 185 304 98 29 chr3 194512042 194512144 -23525014 - L2 LINE L2 0 3313 3205 2208 130 61 3 chr3 194514410 194514771 -23522387 - MLT1B LTR MaLR -3 387 6 236 200 17 0 chr3 194514942 194515002 -23522156 + (TA)n Simple_repeat Simple_repeat 1 61 0 222 37 0 0 chr3 194515003 194515030 -23522128 + (CA)n Simple_repeat Simple_repeat 2 28 0 215 390 62 0 chr3 194515610 194515756 -23521402 + MIR SINE MIR 47 201 -61 925 321 27 12 chr3 194515797 194516202 -23520956 + LTR16B LTR ERVL 54 464 0 23 78 0 0 chr3 194517650 194517701 -23519457 + AT_rich Low_complexity Low_complexity 1 51 0 1660 184 51 0 chr3 194518187 194518503 -23518655 + L1PA5 LINE L1 3 334 -5812 25798 59 9 3 chr3 194518603 194524210 -23512948 + L1PA5 LINE L1 524 6154 0 13688 186 49 28 chr3 194524388 194526175 -23510983 + L1M1 LINE L1 53 1801 -5764 9163 60 3 6 chr3 194526175 194527249 -23509909 - MER11C LTR ERVK 0 1071 1 13688 186 49 28 chr3 194527249 194528687 -23508471 + L1M1 LINE L1 1801 3953 -3612 2067 127 10 3 chr3 194528687 194528978 -23508180 + AluSg SINE Alu 1 293 -17 13688 186 49 28 chr3 194528978 194529339 -23507819 + L1M1 LINE L1 3953 4305 -3260 11595 168 36 21 chr3 194529336 194531411 -23505747 + L1M1 LINE L1 19 2123 -5442 * 5919 237 15 3 chr3 194531511 194532677 -23504481 - L1PA12 LINE L1 -6391 1190 11 3023 179 30 6 chr3 194532686 194532747 -23504411 - L1 LINE L1 -3312 4253 4195 2184 119 6 13 chr3 194532747 194533058 -23504100 - AluSq SINE Alu -4 309 1 3023 179 30 6 chr3 194533058 194533735 -23503423 - L1 LINE L1 -3370 4195 3493 1999 287 21 31 chr3 194533738 194534413 -23502745 + L1PA12 LINE L1 1089 1756 -5825 250 313 53 57 chr3 194534419 194534681 -23502477 + L1PA12 LINE L1 1588 1848 -5733 16760 176 45 6 chr3 194534787 194538996 -23498162 + L1PA14 LINE L1 1674 6157 -1442 1802 80 0 0 chr3 194538996 194539221 -23497937 + AluY SINE Alu 73 297 -14 16760 176 45 6 chr3 194539221 194540593 -23496565 + L1PA14 LINE L1 6157 7475 -124 298 82 0 20 chr3 194540596 194540645 -23496513 + U5 snRNA snRNA 1 48 -68 921 140 0 0 chr3 194540645 194540781 -23496377 + L1PA13 LINE L1 6023 6158 -5 406 198 35 12 chr3 194540808 194540894 -23496264 + Charlie4 DNA MER1_type 1874 1961 0 180 111 0 0 chr3 194541011 194541038 -23496120 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 313 198 238 63 chr3 194541041 194541167 -23495991 - L2 LINE L2 -15 3298 3151 896 180 32 82 chr3 194541295 194541550 -23495608 + MER33 DNA MER1_type 1 230 -81 1360 173 38 38 chr3 194541554 194541782 -23495376 + L1MA3 LINE L1 2830 3060 -3086 1667 203 7 7 chr3 194541782 194542092 -23495066 - AluJb SINE Alu -2 310 1 1360 173 38 38 chr3 194542092 194542205 -23494953 + L1MA3 LINE L1 3059 3171 -2975 7559 167 40 8 chr3 194542433 194545231 -23491927 + L1MA3 LINE L1 3180 6272 -33 275 327 13 47 chr3 194545442 194545592 -23491566 - MIR SINE MIR -1 261 117 1179 237 0 4 chr3 194545641 194545877 -23491281 + MLT1A1 LTR MaLR 4 238 -127 3341 219 28 0 chr3 194545880 194546641 -23490517 + L1 LINE L1 2512 3293 -2853 2443 205 2 0 chr3 194546747 194547221 -23489937 + L1 LINE L1 3971 4445 -1701 2410 111 11 53 chr3 194547226 194547528 -23489630 + THE1B LTR MaLR 1 285 -79 2564 68 0 0 chr3 194547528 194547837 -23489321 - AluY SINE Alu -2 309 1 2410 111 11 53 chr3 194547837 194547914 -23489244 + THE1B LTR MaLR 285 364 0 3504 102 4 0 chr3 194547914 194548384 -23488774 + THE1B-int LTR MaLR 1 472 -1108 40888 36 24 4 chr3 194548487 194553846 -23483312 - L1P1 LINE L1 -390 5765 295 1437 91 15 10 chr3 194554092 194554291 -23482867 - L1PB1 LINE L1 -3 6148 5949 734 226 28 23 chr3 194554381 194554558 -23482600 + MLT1D LTR MaLR 20 197 -308 327 262 10 39 chr3 194554585 194554688 -23482470 + MLT1D LTR MaLR 277 376 -129 1285 56 6 0 chr3 194554691 194554852 -23482306 - AluY SINE Alu -18 293 132 460 164 181 0 chr3 194554854 194554970 -23482188 + MLT1D LTR MaLR 369 505 0 336 169 0 0 chr3 194556483 194556560 -23480598 + A-rich Low_complexity Low_complexity 1 77 0 1068 60 0 77 chr3 194556643 194556685 -23480473 + MER41B LTR ERV1 481 525 -110 2661 36 7 0 chr3 194556685 194556992 -23480166 - AluY SINE Alu -2 309 1 1068 60 0 77 chr3 194556992 194557117 -23480041 + MER41B LTR ERV1 525 635 0 5271 140 59 4 chr3 194557287 194558113 -23479045 + MER41B-int LTR ERV1 1 872 -5074 8911 127 79 45 chr3 194558135 194558239 -23478919 + HUERS-P1 LTR ERV1 3 102 -6161 225 0 0 0 chr3 194558239 194558264 -23478894 + (TC)n Simple_repeat Simple_repeat 2 26 0 8911 127 79 45 chr3 194558264 194559180 -23477978 + HUERS-P1 LTR ERV1 102 985 -5278 2415 33 0 4 chr3 194559180 194559454 -23477704 - AluY SINE Alu -15 296 24 8911 127 79 45 chr3 194559454 194560040 -23477118 + HUERS-P1 LTR ERV1 985 2778 -3485 2384 234 82 10 chr3 194560967 194561783 -23475375 + L1MCa LINE L1 2400 3276 -3150 3671 233 78 41 chr3 194561812 194562403 -23474755 + L1MCa LINE L1 4119 4687 -1739 828 147 0 70 chr3 194562403 194562546 -23474612 + FLAM_C SINE Alu 1 133 0 3671 233 78 41 chr3 194562546 194562695 -23474463 + L1MCa LINE L1 4687 4829 -1597 472 175 10 0 chr3 194562695 194562792 -23474366 + L1MA8 LINE L1 6193 6290 -1 3671 233 78 41 chr3 194562792 194563327 -23473831 + L1MCa LINE L1 4829 5442 -984 1033 221 15 0 chr3 194563327 194563531 -23473627 - MER58A DNA MER1_type -17 207 1 857 257 107 75 chr3 194563569 194563746 -23473412 - MER101B LTR ERV1 0 517 347 1982 112 0 39 chr3 194563746 194564058 -23473100 - AluY SINE Alu -11 300 1 857 257 107 75 chr3 194564058 194564280 -23472878 - MER101B LTR ERV1 -170 347 152 2440 59 0 10 chr3 194564280 194564584 -23472574 + AluY SINE Alu 2 302 -9 857 257 107 75 chr3 194564584 194564729 -23472429 - MER101B LTR ERV1 -365 152 13 24 0 0 0 chr3 194564931 194564955 -23472203 + AT_rich Low_complexity Low_complexity 1 24 0 424 306 52 39 chr3 194565372 194565601 -23471557 - MIR SINE MIR -13 249 18 469 298 136 11 chr3 194566804 194566995 -23470163 + MIR SINE MIR 34 248 -14 2282 74 7 20 chr3 194567126 194567458 -23469700 + AluSp SINE Alu 1 313 0 1337 103 0 0 chr3 194568070 194568244 -23468914 + AluSg/x SINE Alu 133 306 -6 23 68 0 0 chr3 194569545 194569589 -23467569 + AT_rich Low_complexity Low_complexity 1 44 0 317 270 79 51 chr3 194570156 194570334 -23466824 + MLT1K LTR MaLR 188 370 -218 28 0 0 0 chr3 194570814 194570842 -23466316 + AT_rich Low_complexity Low_complexity 1 28 0 185 191 0 64 chr3 194571077 194571124 -23466034 - L2 LINE L2 -25 3288 3245 6164 95 13 15 chr3 194571124 194571958 -23465200 + L1PA13 LINE L1 5246 6078 -85 1244 54 0 7 chr3 194571958 194572270 -23464888 + AluY SINE Alu 1 311 0 6164 95 13 15 chr3 194572270 194572356 -23464802 + L1PA13 LINE L1 6078 6163 0 692 286 59 0 chr3 194573912 194574115 -23463043 + MIR SINE MIR 48 262 0 225 160 20 20 chr3 194574283 194574333 -23462825 + (TA)n Simple_repeat Simple_repeat 2 51 0 2045 137 7 7 chr3 194574994 194575294 -23461864 - AluSx SINE Alu -12 300 1 18168 178 14 35 chr3 194575442 194580329 -23456829 - L1PA13 LINE L1 -40 6826 2083 1371 216 9 19 chr3 194580329 194580644 -23456514 - AluJb SINE Alu 0 312 1 18168 178 14 35 chr3 194580644 194580985 -23456173 - L1PA13 LINE L1 -4783 2083 1736 254 363 29 10 chr3 194581126 194581228 -23455930 - MIR3 SINE MIR -16 192 89 295 253 53 27 chr3 194582078 194582153 -23455005 + L2 LINE L2 3174 3250 -22 1710 222 22 3 chr3 194582514 194582870 -23454288 + MLT1A1 LTR MaLR 3 365 0 180 0 0 0 chr3 194583205 194583225 -23453933 + (T)n Simple_repeat Simple_repeat 1 20 0 276 266 64 46 chr3 194584005 194584114 -23453044 - MLT1H LTR MaLR -316 233 123 207 139 0 0 chr3 194584840 194584876 -23452282 + (CA)n Simple_repeat Simple_repeat 2 37 0 966 226 58 21 chr3 194584986 194585229 -23451929 - L1PB4 LINE L1 -4 6152 5901 182 261 22 76 chr3 194585507 194585599 -23451559 - L2 LINE L2 0 3313 3227 180 0 0 0 chr3 194585842 194585862 -23451296 + (T)n Simple_repeat Simple_repeat 1 20 0 490 261 33 60 chr3 194585924 194586108 -23451050 - L2 LINE L2 0 3313 3135 249 98 0 0 chr3 194587166 194587207 -23449951 + (TTTC)n Simple_repeat Simple_repeat 2 42 0 825 162 11 17 chr3 194587232 194587411 -23449747 + CT-rich Low_complexity Low_complexity 2 179 0 2253 83 0 0 chr3 194587448 194587724 -23449434 - AluSx SINE Alu -36 276 1 15449 159 28 11 chr3 194587724 194590307 -23446851 - L1M1 LINE L1 -4924 2641 17 1380 230 57 5 chr3 194591138 194591508 -23445650 - L1MD3 LINE L1 -8 7987 7599 1061 203 23 109 chr3 194591583 194592007 -23445151 - MLT2D LTR ERVL -47 417 1 981 223 28 35 chr3 194592007 194592289 -23444869 - L1MC4a LINE L1 -377 7431 7152 501 145 0 0 chr3 194592289 194592365 -23444793 - L1MC4a LINE L1 -1090 6718 6643 791 296 40 0 chr3 194592375 194592676 -23444482 - L1M4 LINE L1 -2142 4004 3692 554 200 0 0 chr3 194593007 194593092 -23444066 - 5S rRNA rRNA -33 88 4 1650 176 84 31 chr3 194593711 194593759 -23443399 - MLT2D LTR ERVL -2 412 368 602 26 13 0 chr3 194593759 194593835 -23443323 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 1650 176 84 31 chr3 194593835 194594177 -23442981 - MLT2D LTR ERVL -46 368 1 484 215 13 7 chr3 194594678 194594778 -23442380 + MLT2B2 LTR ERVL 294 440 -68 387 0 0 0 chr3 194594782 194594825 -23442333 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 25 65 0 0 chr3 194594904 194594950 -23442208 + AT_rich Low_complexity Low_complexity 1 46 0 245 235 0 86 chr3 194595442 194595523 -23441635 + MER110A LTR ERV1 97 170 -298 969 266 76 13 chr3 194595600 194595901 -23441257 + MER110 LTR ERV1 166 485 -6 750 169 0 15 chr3 194597508 194597638 -23439520 + FLAM_C SINE Alu 9 136 -7 1103 307 115 20 chr3 194597851 194598630 -23438528 + L2 LINE L2 2452 3301 -12 822 275 82 20 chr3 194599161 194599503 -23437655 + MLT1I LTR MaLR 47 409 0 243 281 75 6 chr3 194599603 194599763 -23437395 - L1ME4a LINE L1 -151 5970 5800 232 218 0 77 chr3 194602001 194602079 -23435079 + MIR SINE MIR 47 118 -144 1714 151 0 49 chr3 194603047 194603351 -23433807 - AluJb SINE Alu -17 295 7 690 75 0 0 chr3 194603545 194603638 -23433520 + (TTCC)n Simple_repeat Simple_repeat 4 96 0 1697 175 13 13 chr3 194603649 194603952 -23433206 - AluJo SINE Alu -9 303 1 426 137 55 0 chr3 194604057 194604130 -23433028 - MER53 DNA DNA -111 78 2 716 277 103 0 chr3 194604134 194604318 -23432840 - MIR SINE MIR -57 205 3 389 307 34 45 chr3 194604318 194604489 -23432669 - MIR SINE MIR -83 179 11 2197 56 52 0 chr3 194606343 194606631 -23430527 - AluY SINE Alu -8 303 1 983 82 15 15 chr3 194606631 194606765 -23430393 - AluY SINE Alu -177 134 1 227 283 17 50 chr3 194606826 194606946 -23430212 - L1MEd LINE L1 -4901 1218 1103 2115 157 61 16 chr3 194607098 194607475 -23429683 + MER61D LTR ERV1 106 499 -2 285 224 0 15 chr3 194607498 194607565 -23429593 + MIR SINE MIR 76 141 -121 2326 106 0 0 chr3 194608458 194608761 -23428397 - AluSx SINE Alu -5 307 5 387 355 81 13 chr3 194611210 194611444 -23425714 + MIR SINE MIR 10 259 -3 316 230 250 0 chr3 194612703 194612803 -23424355 + MIR3 SINE MIR 30 154 -54 385 262 91 0 chr3 194612805 194613015 -23424143 + MER113 DNA MER1_type? 1 229 -292 214 339 0 0 chr3 194613141 194613197 -23423961 + L3 LINE CR1 1517 1572 -5 22 35 0 0 chr3 194613383 194613412 -23423746 + AT_rich Low_complexity Low_complexity 1 29 0 245 211 0 18 chr3 194613968 194614025 -23423133 + GA-rich Low_complexity Low_complexity 2 57 0 25 31 0 0 chr3 194614445 194614477 -23422681 + AT_rich Low_complexity Low_complexity 1 32 0 1558 261 41 5 chr3 194614488 194614856 -23422302 - MLT1I LTR MaLR -3 406 26 369 0 0 0 chr3 194614866 194614907 -23422251 + (TTA)n Simple_repeat Simple_repeat 3 43 0 590 296 51 32 chr3 194615524 194616201 -23420957 + HAL1b LINE L1 351 597 -734 2270 100 3 0 chr3 194616587 194616878 -23420280 - AluSg SINE Alu -18 292 1 442 330 22 11 chr3 194617326 194617508 -23419650 + MIR3 SINE MIR 23 206 -2 1887 144 55 0 chr3 194619265 194619556 -23417602 + AluSx SINE Alu 3 309 -3 21 0 0 0 chr3 194619573 194619594 -23417564 + AT_rich Low_complexity Low_complexity 1 21 0 1207 221 21 21 chr3 194619594 194619933 -23417225 - L1MA3 LINE L1 0 6305 5967 5231 137 29 9 chr3 194620143 194621991 -23415167 - L1MA3 LINE L1 -194 6111 4031 462 317 21 31 chr3 194822064 194822254 -23214904 + MIR SINE MIR 6 191 -62 21 0 0 0 chr3 194822282 194822303 -23214855 + AT_rich Low_complexity Low_complexity 1 21 0 1763 141 7 44 chr3 194822303 194822600 -23214558 - AluJo SINE Alu -26 286 1 349 221 74 13 chr3 194823148 194823297 -23213861 - L1MEc LINE L1 -2143 4072 3915 21 0 0 0 chr3 194823450 194823471 -23213687 + AT_rich Low_complexity Low_complexity 1 21 0 300 91 109 0 chr3 194823751 194823806 -23213352 - L1MA9 LINE L1 -9 6303 6243 1493 216 10 31 chr3 194824020 194824404 -23212754 + MLT1B LTR MaLR 6 381 -9 183 42 0 0 chr3 194824410 194824434 -23212724 + (TCTA)n Simple_repeat Simple_repeat 3 26 0 253 221 87 10 chr3 194824450 194824554 -23212604 - L1MEc LINE L1 -2928 3287 3176 1963 103 69 17 chr3 194824556 194824906 -23212252 - THE1C LTR MaLR 0 375 8 2411 94 0 0 chr3 194824946 194825255 -23211903 - AluSc SINE Alu 0 309 1 2280 93 3 7 chr3 194825255 194825556 -23211602 - AluSp SINE Alu -13 300 1 241 274 0 12 chr3 194825557 194825641 -23211517 - L1MEc LINE L1 -3059 3156 3074 1428 129 118 43 chr3 194825641 194825920 -23211238 - AluJb SINE Alu -12 300 1 2277 111 0 13 chr3 194825960 194826276 -23210882 - AluSx SINE Alu 0 312 1 498 233 31 65 chr3 194826289 194827301 -23209857 - L1MEc LINE L1 -5107 1289 199 2059 107 11 0 chr3 194827301 194827607 -23209551 - AluSx SINE Alu 0 309 1 498 233 31 65 chr3 194827607 194827764 -23209394 - L1MEc LINE L1 -6197 199 38 2149 133 0 7 chr3 194827870 194828171 -23208987 + AluSx SINE Alu 1 299 -13 277 311 28 0 chr3 194828270 194828376 -23208782 + HAL1b LINE L1 399 507 -841 427 143 10 71 chr3 194828918 194829016 -23208142 + MER46C DNA MER2_type 246 337 -1 248 307 30 40 chr3 194829201 194829302 -23207856 - MIR SINE MIR -115 147 48 371 222 175 0 chr3 194830248 194830374 -23206784 - FLAM_A SINE Alu -2 131 1 481 275 87 38 chr3 194830374 194830719 -23206439 - HAL1 LINE L1 -175 2332 1971 641 221 91 86 chr3 194830720 194830925 -23206233 - HAL1 LINE L1 -1107 1400 1191 2319 77 0 39 chr3 194830925 194831274 -23205884 - AluSx SINE Alu 0 312 1 641 221 91 86 chr3 194831274 194831407 -23205751 - HAL1 LINE L1 -1316 1191 1060 1284 261 141 23 chr3 194831425 194832207 -23204951 - HAL1 LINE L1 -1540 967 94 24 0 0 0 chr3 194833321 194833345 -23203813 + AT_rich Low_complexity Low_complexity 1 24 0 2246 100 0 13 chr3 194835282 194835583 -23201575 + AluSx SINE Alu 1 297 -15 2161 114 0 26 chr3 194836246 194836552 -23200606 - AluSx SINE Alu -14 298 1 2120 105 18 0 chr3 194836755 194837040 -23200118 + AluSg1 SINE Alu 1 290 -19 25 0 0 0 chr3 194837701 194837726 -23199432 + AT_rich Low_complexity Low_complexity 1 25 0 1733 167 27 14 chr3 194838722 194839015 -23198143 - AluJb SINE Alu -15 297 1 634 176 0 24 chr3 194839031 194839156 -23198002 - FLAM_C SINE Alu -11 122 1 21 0 0 0 chr3 194839281 194839302 -23197856 + AT_rich Low_complexity Low_complexity 1 21 0 288 257 9 28 chr3 194839341 194839450 -23197708 + L1MC5 LINE L1 7809 7915 -46 2846 3 0 0 chr3 194840069 194840375 -23196783 + AluY SINE Alu 1 306 -5 724 226 21 26 chr3 194840487 194840636 -23196522 - MER5A DNA MER1_type 0 189 40 1798 171 31 0 chr3 194840636 194840923 -23196235 + AluJb SINE Alu 1 296 -16 724 226 21 26 chr3 194840923 194840963 -23196195 - MER5A DNA MER1_type -149 40 1 273 194 113 0 chr3 194841432 194841494 -23195664 - MER5A DNA MER1_type -110 79 11 761 215 65 5 chr3 194841572 194841772 -23195386 - LTR37A LTR ERV1 -65 361 150 25 65 0 0 chr3 194845294 194845340 -23191818 + AT_rich Low_complexity Low_complexity 1 46 0 180 111 0 0 chr3 194845621 194845648 -23191510 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 1689 99 116 83 chr3 194846595 194846752 -23190406 + AluSx SINE Alu 1 151 -161 2287 93 0 20 chr3 194846752 194847054 -23190104 + AluSc SINE Alu 1 296 -13 1689 99 116 83 chr3 194847054 194847198 -23189960 + AluSx SINE Alu 151 312 0 2089 123 0 7 chr3 194847227 194847520 -23189638 - AluSx SINE Alu -21 291 1 1619 165 20 26 chr3 194847560 194847863 -23189295 + AluJo SINE Alu 1 301 -11 388 241 72 30 chr3 194847952 194848118 -23189040 + L1ME3A LINE L1 5987 6159 -11 2416 68 3 0 chr3 194849571 194849867 -23187291 + AluSx SINE Alu 1 297 -15 194 0 39 0 chr3 194849867 194849893 -23187265 + (TA)n Simple_repeat Simple_repeat 2 28 0 80 21 0 0 chr3 194849958 194850052 -23187106 + AT_rich Low_complexity Low_complexity 1 94 0 984 204 57 59 chr3 194850052 194850471 -23186687 + L1MD2 LINE L1 5860 6230 -8 183 42 0 0 chr3 194850471 194850495 -23186663 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1232 206 130 0 chr3 194850688 194850941 -23186217 + AluJo SINE Alu 1 286 -26 1802 260 125 49 chr3 194851621 194851671 -23185487 - HAL1 LINE L1 -1 2506 2461 2194 83 7 17 chr3 194851671 194851987 -23185171 - AluSx SINE Alu 0 312 2 1802 260 125 49 chr3 194851987 194853150 -23184008 - HAL1 LINE L1 -46 2461 1201 1329 194 68 0 chr3 194853202 194853450 -23183708 - AluJb SINE Alu -47 265 1 449 246 158 74 chr3 194853629 194853914 -23183244 - HAL1 LINE L1 -1620 887 579 2076 56 32 0 chr3 194853934 194854218 -23182940 - L1PA10 LINE L1 -396 5772 5480 3035 72 12 2 chr3 194854218 194854618 -23182540 + L1PA10 LINE L1 5761 6168 0 401 349 112 7 chr3 194854641 194854936 -23182222 - HAL1 LINE L1 -1946 561 236 1500 131 0 151 chr3 194855112 194855464 -23181694 + AluJo SINE Alu 1 299 -3 699 276 55 43 chr3 194855501 194855827 -23181331 + MER90 LTR ERV1 285 614 0 352 321 73 67 chr3 194856195 194856703 -23180455 + L2 LINE L2 2332 2842 -472 210 329 13 13 chr3 194856919 194856998 -23180160 + L2 LINE L2 3225 3303 -10 767 184 0 6 chr3 194857108 194857276 -23179882 + L1MC3 LINE L1 7607 7773 -12 922 158 70 0 chr3 194857278 194857436 -23179722 - FAM SINE Alu -6 169 1 578 148 17 0 chr3 194857452 194857567 -23179591 + Zaphod DNA AcHobo 2803 2919 -1112 800 163 0 8 chr3 194857649 194857778 -23179380 - FLAM_C SINE Alu -5 128 1 1475 188 68 56 chr3 194857778 194858279 -23178879 - L1MDa LINE L1 -3896 2644 2138 710 259 114 25 chr3 194858299 194858486 -23178672 - L1MC/D LINE L1 -2115 5693 5524 1771 173 33 3 chr3 194858486 194858787 -23178371 - AluJb SINE Alu -2 310 1 710 259 114 25 chr3 194858787 194858924 -23178234 - L1MC/D LINE L1 -2284 5524 5340 2334 75 10 0 chr3 194858932 194859254 -23177904 - AluY SINE Alu 0 311 8 1723 191 0 43 chr3 194859324 194859649 -23177509 - AluJo SINE Alu -1 311 1 2469 48 6 10 chr3 194859960 194860272 -23176886 + AluY SINE Alu 1 311 0 284 241 102 55 chr3 194860464 194860700 -23176458 + L1MC4 LINE L1 7431 7677 -284 1472 188 57 14 chr3 194860786 194861068 -23176090 + AluJo SINE Alu 1 294 -18 205 210 48 16 chr3 194861086 194861148 -23176010 + GA-rich Low_complexity Low_complexity 4 67 0 2200 109 0 0 chr3 194861155 194861479 -23175679 + AluSp SINE Alu 1 313 0 2122 136 10 0 chr3 194861824 194862167 -23174991 - AluSx SINE Alu 0 346 1 247 342 137 0 chr3 194862457 194862574 -23174584 - L2 LINE L2 -1 3312 3180 396 0 0 0 chr3 194862641 194862685 -23174473 + (TG)n Simple_repeat Simple_repeat 1 44 0 209 286 16 16 chr3 194863014 194863077 -23174081 + L2 LINE L2 3206 3268 -4 317 228 13 0 chr3 194863177 194863256 -23173902 - MLT1I LTR MaLR 0 409 330 2138 116 0 3 chr3 194863257 194863560 -23173598 - LTR5 LTR ERVK 0 969 668 1966 130 13 25 chr3 194863560 194863875 -23173283 - AluSx SINE Alu 0 312 1 569 272 18 6 chr3 194863918 194864087 -23173071 - MLT1I LTR MaLR -200 209 39 1199 198 78 53 chr3 194864121 194864404 -23172754 - AluJo SINE Alu -12 290 1 2196 100 35 3 chr3 194864884 194865174 -23171984 + AluSq SINE Alu 1 299 -14 1650 163 51 31 chr3 194865289 194865583 -23171575 - AluJb SINE Alu -12 300 1 474 326 7 14 chr3 194865892 194866030 -23171128 + L2 LINE L2 3136 3272 0 581 277 18 0 chr3 194866134 194866213 -23170945 - MER69A DNA AcHobo -2357 169 93 2152 130 0 3 chr3 194866213 194866514 -23170644 + AluSx SINE Alu 1 300 -12 581 277 18 0 chr3 194866514 194866600 -23170558 - MER69A DNA AcHobo -2433 93 1 374 277 11 0 chr3 194866849 194866943 -23170215 + MER5A DNA MER1_type 2 96 -93 2207 89 7 0 chr3 194867152 194867444 -23169714 + AluSx SINE Alu 17 310 -2 379 244 118 24 chr3 194867449 194867695 -23169463 + L1ME4a LINE L1 5852 6120 -1 1814 171 7 0 chr3 194867701 194868005 -23169153 + AluSx SINE Alu 1 306 -6 191 235 59 20 chr3 194869067 194869118 -23168040 - MIR3 SINE MIR -11 197 145 332 237 85 114 chr3 194869418 194869654 -23167504 - L1M2 LINE L1 -5761 1088 860 2253 117 3 0 chr3 194871693 194872001 -23165157 - AluSp SINE Alu -3 310 2 234 246 162 96 chr3 194872089 194872256 -23164902 + MIR SINE MIR 12 189 -73 2307 58 41 0 chr3 194872293 194872586 -23164572 + AluY SINE Alu 1 305 -6 1917 99 3 96 chr3 194872730 194873069 -23164089 + AluSq SINE Alu 1 310 0 286 266 173 64 chr3 194873069 194873275 -23163883 + MIR SINE MIR 39 262 0 1367 173 0 5 chr3 194873477 194873691 -23163467 + AluSx SINE Alu 63 275 -37 459 80 80 0 chr3 194873698 194873810 -23163348 + (TA)n Simple_repeat Simple_repeat 1 121 0 448 320 35 12 chr3 194875265 194875437 -23161721 + Tigger8 DNA MER2_type 252 427 -239 1057 212 22 31 chr3 194875909 194876135 -23161023 - MER58A DNA MER1_type 0 224 1 1667 168 25 0 chr3 194877052 194877178 -23159980 + AluJb SINE Alu 6 127 -185 2071 89 34 17 chr3 194877178 194877471 -23159687 + AluSq SINE Alu 1 298 -15 1667 168 25 0 chr3 194877471 194877629 -23159529 + AluJb SINE Alu 127 297 -15 16291 119 58 42 chr3 194878353 194878764 -23158394 + Tigger4(Zombi) DNA MER2_type 2 405 -2326 2106 117 0 0 chr3 194878764 194879047 -23158111 - AluSx SINE Alu -27 285 3 16291 119 58 42 chr3 194879047 194881321 -23155837 + Tigger4(Zombi) DNA MER2_type 405 2731 0 7884 39 4 3 chr3 194881470 194883120 -23154038 - L1PA5 LINE L1 -4 6150 4501 961 79 0 29 chr3 194883122 194883262 -23153896 + L1PA5 LINE L1 4380 4515 -1631 2055 174 74 36 chr3 194883264 194883354 -23153804 - L1MB7 LINE L1 -58 6126 6037 1164 198 234 54 chr3 194883354 194883968 -23153190 - L1MC4 LINE L1 -743 5403 4900 1272 206 137 8 chr3 194883968 194884230 -23152928 - AluJo SINE Alu -6 296 1 1164 198 234 54 chr3 194884230 194884296 -23152862 - L1MC4 LINE L1 -1246 4900 5157 2393 80 0 26 chr3 194884296 194884608 -23152550 - AluY SINE Alu -7 304 1 1164 198 234 54 chr3 194884608 194884681 -23152477 - L1MC4 LINE L1 -988 5158 5099 2067 131 7 0 chr3 194885302 194885593 -23151565 - AluSx SINE Alu -18 294 2 2278 98 3 0 chr3 194885725 194886022 -23151136 - AluSg SINE Alu -12 298 1 2531 60 0 3 chr3 194886571 194886873 -23150285 - AluY SINE Alu -10 301 1 1018 114 0 0 chr3 194886976 194887108 -23150050 + AluSq SINE Alu 1 132 -181 201 274 88 49 chr3 194887129 194887231 -23149927 - MIR SINE MIR -68 140 35 989 146 63 0 chr3 194887295 194887453 -23149705 + AluSq SINE Alu 134 301 -12 2385 91 0 0 chr3 194887572 194887869 -23149289 + AluSg1 SINE Alu 8 304 -5 722 173 102 0 chr3 194889003 194889130 -23148028 - FLAM_C SINE Alu -2 141 2 1954 167 42 11 chr3 194889266 194889620 -23147538 + MLT1A1 LTR MaLR 1 365 0 228 222 56 0 chr3 194889921 194889975 -23147183 - L3 LINE CR1 -2 1575 1519 1579 133 53 34 chr3 194890022 194890131 -23147027 + AluJo SINE Alu 14 119 -193 2391 52 0 61 chr3 194890131 194890458 -23146700 + AluY SINE Alu 3 309 -2 1579 133 53 34 chr3 194890458 194890612 -23146546 + AluJo SINE Alu 119 282 -30 321 233 103 0 chr3 194890733 194890849 -23146309 - MER113 DNA MER1_type? -387 134 7 1099 77 53 41 chr3 194891199 194891368 -23145790 - MER30 DNA MER1_type -57 173 3 2211 99 13 7 chr3 194891419 194891722 -23145436 + AluSx SINE Alu 1 305 -7 486 272 107 23 chr3 194892006 194892267 -23144891 - L1MB7 LINE L1 -2256 5552 5270 2480 65 0 3 chr3 194892486 194892795 -23144363 - AluY SINE Alu -3 308 1 25 0 0 0 chr3 194893119 194893144 -23144014 + AT_rich Low_complexity Low_complexity 1 25 0 443 294 110 5 chr3 194893183 194893401 -23143757 - L1MB7 LINE L1 -2194 3952 3712 2025 127 3 3 chr3 194893407 194893707 -23143451 - AluSg SINE Alu -9 301 2 268 169 100 54 chr3 194893796 194893926 -23143232 - L1MB7 LINE L1 -2685 3461 3326 25 0 0 0 chr3 194894213 194894238 -23142920 + AT_rich Low_complexity Low_complexity 1 25 0 2046 117 24 24 chr3 194894324 194894665 -23142493 + LTR8 LTR ERV1 350 690 -1 2424 55 6 10 chr3 194894717 194895029 -23142129 - AluY SINE Alu 0 311 1 808 174 50 25 chr3 194895068 194895251 -23141907 - AluJb SINE Alu 0 312 129 26 30 0 0 chr3 194895251 194895284 -23141874 + AT_rich Low_complexity Low_complexity 1 33 0 640 143 0 19 chr3 194895326 194895431 -23141727 - FLAM_C SINE Alu -32 111 9 387 242 63 0 chr3 194897209 194897304 -23139854 - MIR SINE MIR -120 142 42 2125 128 3 3 chr3 194897469 194897766 -23139392 - AluSg SINE Alu -13 297 1 830 70 26 9 chr3 194897933 194898048 -23139110 + AluY SINE Alu 188 304 -7 840 190 28 0 chr3 194898048 194898190 -23138968 - FRAM SINE Alu -30 146 1 1290 89 22 98 chr3 194898193 194898310 -23138848 + Tigger2 DNA MER2_type 2511 2605 -113 2046 153 0 0 chr3 194898310 194898610 -23138548 - AluJo SINE Alu -12 300 1 1290 89 22 98 chr3 194898610 194898716 -23138442 + Tigger2 DNA MER2_type 2605 2717 -1 550 273 15 0 chr3 194898761 194898893 -23138265 - MIR SINE MIR -61 201 68 234 0 0 0 chr3 194899769 194899795 -23137363 + (A)n Simple_repeat Simple_repeat 1 26 0 207 0 0 0 chr3 194899803 194899826 -23137332 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 23 33 0 0 chr3 194900362 194900392 -23136766 + AT_rich Low_complexity Low_complexity 1 30 0 1552 155 0 0 chr3 194900696 194900928 -23136230 - AluSp SINE Alu -3 310 79 2313 92 0 0 chr3 194900988 194901282 -23135876 + AluSq SINE Alu 1 294 -19 430 121 17 0 chr3 194901935 194901993 -23135165 + AluSq SINE Alu 112 170 -143 1147 93 0 0 chr3 194901997 194902147 -23135011 + AluSq SINE Alu 145 294 -19 190 271 129 0 chr3 194903457 194903527 -23133631 - MIR SINE MIR -24 238 160 1489 123 0 14 chr3 194903720 194903940 -23133218 - AluSg/x SINE Alu -11 299 83 2439 92 0 0 chr3 194904852 194905156 -23132002 - AluSg SINE Alu -6 304 1 1344 188 4 13 chr3 194905292 194905531 -23131627 - AluJo SINE Alu -75 237 1 2957 153 173 135 chr3 194905768 194906272 -23130886 + L1MC3 LINE L1 6533 7016 -769 249 114 0 0 chr3 194906272 194906307 -23130851 - U2 snRNA snRNA -150 38 4 313 277 27 45 chr3 194906317 194906429 -23130729 + MLT1F1 LTR MaLR 25 134 -433 2957 153 173 135 chr3 194906429 194906442 -23130716 + L1MC3 LINE L1 7024 7035 -750 2535 57 13 0 chr3 194906442 194906742 -23130416 + AluSp SINE Alu 1 304 -9 2957 153 173 135 chr3 194906742 194907274 -23129884 + L1MC3 LINE L1 7035 7785 0 1715 135 18 18 chr3 194907286 194907560 -23129598 + AluJo SINE Alu 1 274 -38 332 306 69 14 chr3 194907915 194908059 -23129099 - MIR3 SINE MIR -54 154 3 24 0 0 0 chr3 194909484 194909508 -23127650 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 194909877 194909898 -23127260 + AT_rich Low_complexity Low_complexity 1 21 0 1512 191 28 17 chr3 194910049 194910337 -23126821 - AluJo SINE Alu -21 291 1 1479 165 55 110 chr3 194910483 194910721 -23126437 - MLT1B LTR MaLR -2 388 179 2322 98 3 9 chr3 194910721 194911036 -23126122 - AluSq SINE Alu 0 313 1 1479 165 55 110 chr3 194911036 194911198 -23125960 - MLT1B LTR MaLR -211 179 10 258 337 61 50 chr3 194911507 194911688 -23125470 - MIR3 SINE MIR -6 202 20 2143 67 14 18 chr3 194911922 194912204 -23124954 + AluY SINE Alu 1 281 -30 38 0 0 0 chr3 194912668 194912706 -23124452 + AT_rich Low_complexity Low_complexity 1 38 0 342 252 0 0 chr3 194912724 194912839 -23124319 + A-rich Low_complexity Low_complexity 1 115 0 257 250 0 0 chr3 194912901 194912953 -23124205 - AluJ/monomer SINE Alu -251 52 1 2394 70 0 10 chr3 194912984 194913282 -23123876 + AluY SINE Alu 1 295 -16 329 327 68 15 chr3 194913684 194913889 -23123269 + MIR SINE MIR 19 234 -28 1966 135 6 16 chr3 194914097 194914408 -23122750 - AluSq SINE Alu -5 308 1 252 341 23 0 chr3 194914414 194914502 -23122656 - MIR3 SINE MIR -22 186 97 401 317 122 18 chr3 194914576 194914740 -23122418 + MER5A DNA MER1_type 8 188 -1 2201 111 3 0 chr3 194916652 194916940 -23120218 + AluSx SINE Alu 1 289 -23 21 100 0 0 chr3 194916947 194917017 -23120141 + AT_rich Low_complexity Low_complexity 1 70 0 275 302 70 23 chr3 194918211 194918340 -23118818 + L2 LINE L2 3177 3311 -2 229 239 60 15 chr3 194918382 194918449 -23118709 + MIR SINE MIR 31 100 -162 525 208 39 23 chr3 194918462 194918592 -23118566 + MIR SINE MIR 31 162 -100 2373 78 0 3 chr3 194918914 194919210 -23117948 + AluSq SINE Alu 2 296 -17 721 223 53 117 chr3 194920315 194920565 -23116593 + L1ME4a LINE L1 5688 5898 -223 2354 113 0 0 chr3 194920565 194920875 -23116283 + AluSx SINE Alu 1 310 -2 721 223 53 117 chr3 194920875 194921078 -23116080 + L1ME4a LINE L1 5898 6112 -9 4205 121 327 84 chr3 194921126 194922388 -23114770 + pTR5 LTR ERV1 276 2295 -143 293 328 97 27 chr3 194922390 194922719 -23114439 - L1MEd LINE L1 -3433 2696 2345 411 230 0 0 chr3 194922815 194922889 -23114269 - Tigger5 DNA MER2_type -1 2322 2249 * 1174 205 0 0 chr3 194922888 194923088 -23114070 - Tigger5 DNA MER2_type -2095 228 29 28 29 0 0 chr3 194923307 194923342 -23113816 + GC_rich Low_complexity Low_complexity 1 35 0 201 175 0 0 chr3 194924924 194924964 -23112194 + GA-rich Low_complexity Low_complexity 3 42 0 2131 98 7 3 chr3 194926485 194926771 -23110387 + AluSq SINE Alu 1 287 -26 243 0 0 0 chr3 194926771 194926798 -23110360 + (CA)n Simple_repeat Simple_repeat 2 28 0 893 148 7 7 chr3 194926813 194926955 -23110203 + FRAM SINE Alu 20 161 -15 241 146 83 21 chr3 194927407 194927455 -23109703 - Tigger5 DNA MER2_type -2271 52 2 1717 166 14 14 chr3 194927501 194927791 -23109367 - AluJo SINE Alu -22 290 1 719 281 111 46 chr3 194927795 194928222 -23108936 - L1MEd LINE L1 -4100 2210 1812 2121 125 0 0 chr3 194928222 194928517 -23108641 - AluSx SINE Alu -17 295 1 719 281 111 46 chr3 194928517 194929464 -23107694 - L1MEd LINE L1 -4498 1812 700 24 32 0 0 chr3 194929464 194929495 -23107663 + AT_rich Low_complexity Low_complexity 1 31 0 2036 148 0 0 chr3 194929497 194929788 -23107370 - AluSx SINE Alu -21 291 1 1955 115 37 10 chr3 194929847 194930142 -23107016 - AluSc SINE Alu -6 303 1 694 319 34 74 chr3 194930142 194930709 -23106449 - L1MEd LINE L1 -5453 666 123 2300 112 0 0 chr3 194930842 194931147 -23106011 - AluSx SINE Alu -7 305 1 2397 74 3 0 chr3 194931641 194931939 -23105219 + AluY SINE Alu 1 299 -12 670 202 117 76 chr3 194932405 194932651 -23104507 - MER102b DNA MER1_type -1098 330 67 2084 105 30 16 chr3 194932651 194932956 -23104202 + AluSg SINE Alu 1 309 -1 670 202 117 76 chr3 194932956 194933026 -23104132 - MER102b DNA MER1_type -1361 67 1 238 89 0 89 chr3 194934313 194934358 -23102800 + L2 LINE L2 3261 3301 -12 1328 118 5 47 chr3 194934402 194934613 -23102545 + Tigger2a DNA MER2_type 1 202 -232 2643 99 17 14 chr3 194934613 194934975 -23102183 - L1PA11 LINE L1 -1 6173 5811 2242 82 6 48 chr3 194934976 194935292 -23101866 - AluSg SINE Alu -7 303 1 2063 116 3 10 chr3 194935417 194935709 -23101449 - AluSx SINE Alu -22 290 1 221 307 44 35 chr3 194935727 194935841 -23101317 + L2 LINE L2 3199 3313 0 2153 118 3 3 chr3 194936306 194936612 -23100546 - AluSx SINE Alu -6 306 1 801 172 8 0 chr3 194936629 194936763 -23100395 - AluJo SINE Alu -177 135 1 2499 79 0 0 chr3 194937480 194937785 -23099373 - AluSg SINE Alu -5 305 1 470 182 116 16 chr3 194937837 194937958 -23099200 - L1ME LINE L1 -3358 2722 2590 1863 232 77 35 chr3 194937990 194939079 -23098079 - L1ME LINE L1 -3597 2483 1368 1766 155 0 29 chr3 194939426 194939736 -23097422 + AluJo SINE Alu 1 301 -11 1266 243 59 65 chr3 194939782 194939855 -23097303 - L1ME LINE L1 -4747 1333 1261 2260 38 0 4 chr3 194939855 194940116 -23097042 + AluY SINE Alu 39 298 -13 1266 243 59 65 chr3 194940116 194941012 -23096146 - L1ME LINE L1 -4819 1261 386 12612 191 22 8 chr3 194941021 194942426 -23094732 - L1PA15 LINE L1 -2 7601 6218 2027 114 0 45 chr3 194942426 194942734 -23094424 - AluSg SINE Alu -10 300 7 12612 191 22 8 chr3 194942734 194945021 -23092137 - L1PA15 LINE L1 -1385 6218 3854 391 328 47 26 chr3 194945076 194945308 -23091850 - L1PA15 LINE L1 -5678 1903 1667 1198 219 34 7 chr3 194945453 194945745 -23091413 + L1MC4 LINE L1 7538 7837 -205 2106 131 6 13 chr3 194945797 194946111 -23091047 + AluSx SINE Alu 1 312 0 314 250 56 46 chr3 194946166 194946274 -23090884 - MER46C DNA MER2_type -221 117 9 1568 182 15 4 chr3 194946315 194946584 -23090574 + AluJo SINE Alu 1 272 -40 994 220 28 0 chr3 194946722 194946904 -23090254 + MER5A DNA MER1_type 3 189 0 2093 155 109 50 chr3 194947066 194947640 -23089518 + MER4A LTR ERV1 1 465 0 354 23 0 0 chr3 194948581 194948624 -23088534 + (GA)n Simple_repeat Simple_repeat 2 44 0 6207 193 41 10 chr3 194948774 194950127 -23087031 + L1 LINE L1 2549 3943 -2203 1192 197 0 0 chr3 194950127 194950335 -23086823 + AluJo SINE Alu 81 288 -24 313 88 62 0 chr3 194950335 194950415 -23086743 + (TA)n Simple_repeat Simple_repeat 2 86 0 2047 148 26 3 chr3 194950415 194950759 -23086399 + L1 LINE L1 3926 4277 -1869 6785 64 7 69 chr3 194950827 194952135 -23085023 + SVA Other Other 393 1386 0 325 154 62 0 chr3 194952138 194952203 -23084955 + L1 LINE L1 4266 4334 -1812 32 103 0 0 chr3 194952487 194952603 -23084555 + GC_rich Low_complexity Low_complexity 1 116 0 988 80 8 0 chr3 194953044 194953169 -23083989 - AluSg SINE Alu -184 126 1 227 278 0 0 chr3 194953169 194953241 -23083917 - MIR SINE MIR -70 192 121 2058 152 0 7 chr3 194954161 194954471 -23082687 + AluSx SINE Alu 2 309 -3 1889 159 0 13 chr3 194955063 194955377 -23081781 - AluJb SINE Alu -2 310 1 331 303 50 0 chr3 194955445 194955564 -23081594 - L1MDa LINE L1 -4868 1672 1548 1752 112 130 7 chr3 194955651 194955920 -23081238 + AluSx SINE Alu 1 302 0 791 177 51 51 chr3 194956800 194956958 -23080200 - AluJo/FRAM SINE Alu -26 286 129 2287 105 0 9 chr3 194956960 194957275 -23079883 - AluSx SINE Alu 0 312 1 539 289 89 31 chr3 194957283 194958222 -23078936 - L1MEd LINE L1 -4573 1737 700 24 32 0 0 chr3 194958222 194958253 -23078905 + AT_rich Low_complexity Low_complexity 1 31 0 2156 131 0 0 chr3 194958255 194958546 -23078612 - AluSx SINE Alu -21 291 1 1962 115 37 10 chr3 194958605 194958900 -23078258 - AluSc SINE Alu -6 303 1 489 323 34 75 chr3 194958900 194959457 -23077701 - L1MEd LINE L1 -5453 666 133 2341 105 0 0 chr3 194959600 194959905 -23077253 - AluSx SINE Alu -7 305 1 2350 81 3 0 chr3 194960399 194960697 -23076461 + AluY SINE Alu 1 299 -12 539 205 117 76 chr3 194961164 194961410 -23075748 - MER102b DNA MER1_type -1098 330 67 2091 98 29 20 chr3 194961410 194961716 -23075442 + AluSg SINE Alu 1 309 -1 539 205 117 76 chr3 194961716 194961786 -23075372 - MER102b DNA MER1_type -1361 67 1 239 89 0 89 chr3 194963070 194963115 -23074043 + L2 LINE L2 3261 3301 -12 332 153 14 28 chr3 194963157 194963229 -23073929 + Tigger2a DNA MER2_type 1 71 -363 287 255 255 35 chr3 194964170 194964311 -23072847 - MIR SINE MIR -85 177 6 785 340 4 8 chr3 194964346 194964596 -23072562 + MIR SINE MIR 12 260 -2 182 330 172 35 chr3 194964959 194965162 -23071996 - L2 LINE L2 -27 3245 3015 1889 137 27 10 chr3 194965449 194965749 -23071409 + AluJb SINE Alu 1 305 -7 1094 205 13 13 chr3 194967155 194967379 -23069779 + MER58A DNA MER1_type 1 224 0 474 317 132 21 chr3 194967643 194967924 -23069234 - L3 LINE CR1 -285 1292 981 2309 84 0 3 chr3 194968030 194968342 -23068816 + AluSq SINE Alu 1 311 0 520 212 97 58 chr3 194968696 194969004 -23068154 + LTR48B LTR ERV1 1 363 -340 38981 35 3 2 chr3 194969107 194974356 -23062802 + L1P1 LINE L1 409 5665 -490 23 86 0 0 chr3 194975249 194975307 -23061851 + AT_rich Low_complexity Low_complexity 1 58 0 23 54 0 0 chr3 194978298 194978335 -23058823 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr3 194979079 194979107 -23058051 + AT_rich Low_complexity Low_complexity 1 28 0 447 246 355 4 chr3 194979559 194979787 -23057371 + L2 LINE L2 3006 3313 0 23 33 0 0 chr3 194980163 194980193 -23056965 + AT_rich Low_complexity Low_complexity 1 30 0 1411 170 181 40 chr3 194980201 194980444 -23056714 + L1 LINE L1 3958 4165 -1981 2133 143 0 3 chr3 194980444 194980745 -23056413 + AluSx SINE Alu 1 300 -12 1411 170 181 40 chr3 194980745 194980953 -23056205 + L1 LINE L1 4165 4473 -1673 367 195 25 34 chr3 194980960 194981078 -23056080 + L1 LINE L1 4613 4729 -1417 2165 144 12 2 chr3 194981203 194981613 -23055545 + L1M4 LINE L1 4314 4727 -1419 264 30 0 0 chr3 194981625 194981658 -23055500 + (CA)n Simple_repeat Simple_repeat 2 34 0 1833 160 0 10 chr3 194981819 194982107 -23055051 - AluJb SINE Alu -27 285 1 264 276 33 20 chr3 194982112 194982264 -23054894 + L1M4 LINE L1 5088 5241 -905 1810 183 0 18 chr3 194982266 194982604 -23054554 + L1M2 LINE L1 3 334 -6515 * 7282 177 27 21 chr3 194982590 194985060 -23052098 + L1M2 LINE L1 1421 3907 -2941 1857 96 35 11 chr3 194985061 194985322 -23051836 - AluSq SINE Alu -13 300 34 237 24 143 0 chr3 194985334 194985376 -23051782 - L1P LINE L1 -942 5204 5157 1920 112 0 4 chr3 194985376 194985627 -23051531 - AluSq SINE Alu -63 250 1 232 163 41 20 chr3 194985829 194985878 -23051280 - MER5B DNA MER1_type -126 52 3 272 238 168 0 chr3 194986110 194986211 -23050947 + MIR SINE MIR 37 154 -108 4223 53 2 34 chr3 194986219 194986780 -23050378 + L1PA8A LINE L1 5583 6125 -6 2371 72 7 0 chr3 194987176 194987469 -23049689 - AluY SINE Alu -16 295 1 1989 228 53 62 chr3 194987469 194987615 -23049543 - MER20B DNA MER1_type -23 760 614 1823 151 13 17 chr3 194987615 194987913 -23049245 - AluSx SINE Alu -15 297 1 1989 228 53 62 chr3 194987913 194988525 -23048633 - MER20B DNA MER1_type -169 614 9 1921 257 49 61 chr3 194988764 194989594 -23047564 - L1PA12 LINE L1 -6751 830 11 359 307 73 77 chr3 194989596 194990075 -23047083 - L1ME LINE L1 -5581 489 13 9246 149 43 24 chr3 194990548 194991043 -23046115 - L1MA4A LINE L1 -6 6297 5813 306 0 0 0 chr3 194991043 194991077 -23046081 + (TA)n Simple_repeat Simple_repeat 2 35 0 9246 149 43 24 chr3 194991077 194993602 -23043556 - L1MA4A LINE L1 -490 5813 3196 3042 81 11 0 chr3 194993602 194994046 -23043112 + L1P LINE L1 1 449 -5697 202 222 44 0 chr3 194994181 194994226 -23042932 - L2 LINE L2 -259 3054 3008 2324 145 40 67 chr3 194994229 194994734 -23042424 - Tigger1 DNA MER2_type 0 2418 1928 * 6203 120 56 12 chr3 194994730 194995802 -23041356 - Tigger1 DNA MER2_type -1299 1119 1 4036 153 60 96 chr3 194996292 194996909 -23040249 + Looper DNA T2_type 46 601 -957 928 154 31 70 chr3 194996909 194997136 -23040022 - MER20 DNA MER1_type 0 219 2 4036 153 60 96 chr3 194997136 194997703 -23039455 + Looper DNA T2_type 601 1187 -371 492 155 52 0 chr3 194997720 194997836 -23039322 + Looper DNA T2_type 1340 1461 -97 840 196 0 7 chr3 194998102 194998250 -23038908 + AluJo SINE Alu 16 162 -150 213 246 15 15 chr3 194998379 194998444 -23038714 + (CATATA)n Simple_repeat Simple_repeat 4 68 0 197 327 0 0 chr3 194998586 194998641 -23038517 + L2 LINE L2 3214 3268 -45 22 0 0 0 chr3 194998690 194998712 -23038446 + AT_rich Low_complexity Low_complexity 1 22 0 2217 91 3 3 chr3 194998896 194999182 -23037976 - AluSx SINE Alu -25 287 2 3490 165 15 5 chr3 195000320 195000915 -23036243 + MER7C DNA MER2_type 2 602 0 180 310 69 35 chr3 195001014 195001101 -23036057 + MIR SINE MIR 118 207 -55 330 67 0 0 chr3 195003727 195003772 -23033386 + (CA)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr3 195004996 195005017 -23032141 + GC_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 195005373 195005396 -23031762 + GC_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr3 195006964 195006989 -23030169 + AT_rich Low_complexity Low_complexity 1 25 0 2263 84 7 3 chr3 195007017 195007313 -23029845 - AluY SINE Alu -14 297 1 1603 175 58 0 chr3 195007464 195007641 -23029517 - AluJb SINE Alu -4 308 106 207 0 0 0 chr3 195007641 195007664 -23029494 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1603 175 58 0 chr3 195007664 195007777 -23029381 - AluJb SINE Alu -206 106 1 201 350 50 25 chr3 195007899 195008019 -23029139 - L2 LINE L2 -5 3308 3186 2127 47 4 8 chr3 195008345 195008603 -23028555 + SVA Other Other 1130 1386 0 1246 220 36 3 chr3 195008604 195008759 -23028399 + L1MA10 LINE L1 6008 6156 -178 180 0 0 0 chr3 195008759 195008779 -23028379 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1246 220 36 3 chr3 195008779 195008936 -23028222 + L1MA10 LINE L1 6156 6327 -7 304 278 0 80 chr3 195009450 195009612 -23027546 + L3 LINE CR1 1171 1319 -258 25 0 0 0 chr3 195010544 195010569 -23026589 + AT_rich Low_complexity Low_complexity 1 25 0 490 267 35 0 chr3 195010819 195010935 -23026223 + MIR3 SINE MIR 39 158 -50 522 160 17 59 chr3 195010940 195011059 -23026099 + MER3 DNA MER1_type 51 164 -45 925 158 117 161 chr3 195011098 195011389 -23025769 - AluJo SINE Alu -34 278 1 497 224 68 36 chr3 195011396 195011588 -23025570 - L1M4 LINE L1 -868 5278 5081 2286 107 0 0 chr3 195011736 195012044 -23025114 + AluSx SINE Alu 3 310 -2 375 302 74 11 chr3 195012053 195012242 -23024916 + L1MC4a LINE L1 5097 5297 -849 823 293 117 25 chr3 195012247 195012776 -23024382 + L1MC4a LINE L1 5327 5904 -1904 702 294 68 3 chr3 195013934 195014260 -23022898 + HAL1 LINE L1 1424 1770 -737 380 247 37 31 chr3 195014794 195014956 -23022202 + HAL1b LINE L1 749 911 -437 294 209 0 15 chr3 195015798 195015865 -23021293 - LTR50 LTR ERVL -727 68 3 330 321 43 29 chr3 195016104 195016244 -23020914 + MIR SINE MIR 35 176 -86 215 346 114 14 chr3 195016248 195016459 -23020699 - L2 LINE L2 -8 3305 3074 2080 118 9 18 chr3 195017090 195017419 -23019739 + MER1B DNA MER1_type 14 339 0 27 0 0 0 chr3 195017612 195017639 -23019519 + AT_rich Low_complexity Low_complexity 1 27 0 1811 161 36 21 chr3 195018302 195018638 -23018520 - MER2 DNA MER2_type -3 341 1 251 301 140 0 chr3 195018766 195018859 -23018299 + MIR SINE MIR 37 142 -66 292 231 147 56 chr3 195019303 195019446 -23017712 - L3b LINE CR1 -120 1463 1308 524 125 11 0 chr3 195020674 195020762 -23016396 - AluS SINE Alu -224 89 1 4663 164 30 52 chr3 195021794 195022665 -23014493 + MER21B LTR ERV1 1 852 -11 377 252 9 45 chr3 195023889 195024000 -23013158 - U6 snRNA snRNA 0 107 1 301 378 116 8 chr3 195025019 195025278 -23011880 + L1ME LINE L1 4733 5019 -1127 521 218 45 23 chr3 195025407 195025540 -23011618 + FLAM_A SINE Alu 4 139 -3 268 358 37 0 chr3 195025869 195026003 -23011155 + L1ME LINE L1 5494 5632 -489 189 326 35 58 chr3 195026303 195026389 -23010769 + L2 LINE L2 3230 3313 0 2230 109 3 6 chr3 195026613 195026925 -23010233 + AluSp SINE Alu 1 311 -2 305 315 223 10 chr3 195027989 195028186 -23008972 - MIR SINE MIR -6 256 18 308 319 140 38 chr3 195028189 195028346 -23008812 - MIR3 SINE MIR -11 197 25 424 322 80 58 chr3 195028593 195028969 -23008189 - L2 LINE L2 -32 3240 2857 596 221 55 72 chr3 195028994 195029175 -23007983 + MER5B DNA MER1_type 1 178 0 279 292 70 41 chr3 195030460 195030631 -23006527 + L1M4 LINE L1 3670 3845 -2301 198 143 0 0 chr3 195030648 195030683 -23006475 + (TCCC)n Simple_repeat Simple_repeat 3 37 0 228 135 0 0 chr3 195030718 195030755 -23006403 + (CA)n Simple_repeat Simple_repeat 1 37 0 2389 250 32 20 chr3 195031277 195032092 -23005066 + L1M4 LINE L1 2304 3128 -3018 3408 151 68 16 chr3 195032234 195032936 -23004222 + L1PB3 LINE L1 5411 6149 -5 1862 150 7 3 chr3 195033001 195033295 -23003863 - AluJo SINE Alu -17 295 1 4766 172 70 35 chr3 195034341 195035443 -23001715 - Charlie1 DNA MER1_type 0 2761 1621 528 188 129 0 chr3 195037520 195037621 -22999537 - FLAM_A SINE Alu -21 121 8 421 248 151 72 chr3 195037811 195038089 -22999069 + L2 LINE L2 3014 3313 0 23 0 0 0 chr3 195038621 195038644 -22998514 + AT_rich Low_complexity Low_complexity 1 23 0 874 186 68 6 chr3 195039467 195039644 -22997514 + MER58A DNA MER1_type 37 224 0 1572 167 0 139 chr3 195040355 195040715 -22996443 + Tigger5 DNA MER2_type 1 310 -2013 476 153 0 35 chr3 195040697 195040782 -22996376 + Tigger5 DNA MER2_type 2242 2323 0 * 686 342 31 4 chr3 195041438 195041666 -22995492 - MIR SINE MIR -8 254 21 23 0 0 0 chr3 195041930 195041953 -22995205 + AT_rich Low_complexity Low_complexity 1 23 0 22 80 0 0 chr3 195043114 195043164 -22993994 + AT_rich Low_complexity Low_complexity 1 50 0 353 331 79 0 chr3 195045475 195045602 -22991556 - L2 LINE L2 -4 3309 3173 192 347 199 22 chr3 195045714 195045985 -22991173 - L2 LINE L2 -338 2976 2658 1619 170 20 31 chr3 195047334 195047628 -22989530 + AluJb SINE Alu 1 291 -21 2198 142 0 0 chr3 195048775 195049084 -22988074 + AluSx SINE Alu 2 310 -2 423 263 44 29 chr3 195049186 195049323 -22987835 + L2 LINE L2 3175 3313 0 2014 227 53 62 chr3 195049606 195050218 -22986940 + MER20B DNA MER1_type 9 614 -169 2103 134 3 10 chr3 195050218 195050517 -22986641 + AluSx SINE Alu 1 297 -15 2014 227 53 62 chr3 195050517 195050663 -22986495 + MER20B DNA MER1_type 614 760 -23 2390 68 7 0 chr3 195050663 195050956 -22986202 + AluY SINE Alu 1 295 -16 4253 54 2 32 chr3 195051351 195051911 -22985247 - L1PA8A LINE L1 -6 6125 5583 272 238 168 0 chr3 195051919 195052020 -22985138 - MIR SINE MIR -108 154 37 232 163 41 20 chr3 195052252 195052301 -22984857 + MER5B DNA MER1_type 3 52 -126 1920 112 0 4 chr3 195052503 195052754 -22984404 + AluSq SINE Alu 1 250 -63 237 24 143 0 chr3 195052754 195052796 -22984362 + L1P LINE L1 5157 5204 -942 1891 119 35 0 chr3 195052808 195053068 -22984090 + AluSx SINE Alu 34 302 -10 359 308 41 35 chr3 195053204 195053373 -22983785 + MLT1K LTR MaLR 129 298 -290 342 127 0 0 chr3 195053587 195053658 -22983500 + (T)n Simple_repeat Simple_repeat 1 71 0 27 0 0 0 chr3 195054452 195054479 -22982679 + AT_rich Low_complexity Low_complexity 1 27 0 2111 88 33 0 chr3 195054480 195054774 -22982384 + AluSq SINE Alu 1 303 0 796 320 81 33 chr3 195054989 195055532 -22981626 + MLT1K LTR MaLR 7 575 -13 201 200 0 0 chr3 195056547 195056582 -22980576 + L2 LINE L2 3266 3300 -13 203 175 25 0 chr3 195057232 195057272 -22979886 - L2 LINE L2 -2 3311 3271 2273 103 0 3 chr3 195057708 195058018 -22979140 + AluSq SINE Alu 1 309 -4 687 172 0 0 chr3 195058667 195058783 -22978375 + FLAM_C SINE Alu 1 116 -27 24 32 0 0 chr3 195058785 195058816 -22978342 + AT_rich Low_complexity Low_complexity 1 31 0 24 67 0 0 chr3 195058878 195058923 -22978235 + AT_rich Low_complexity Low_complexity 1 45 0 1262 211 104 4 chr3 195058953 195059107 -22978051 - AluJb SINE Alu -26 286 149 222 37 0 0 chr3 195059107 195059134 -22978024 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1262 211 104 4 chr3 195059134 195059239 -22977919 - AluJb SINE Alu -163 149 1 390 231 198 0 chr3 195059266 195059387 -22977771 - MIR SINE MIR -25 237 93 1071 134 8 47 chr3 195059387 195059640 -22977518 + L1MA3 LINE L1 2254 2496 -3650 629 173 0 39 chr3 195059642 195059769 -22977389 + AluSg/x SINE Alu 187 308 -1 8539 141 35 30 chr3 195059771 195061829 -22975329 + L1MA3 LINE L1 3574 5649 -656 2415 88 0 0 chr3 195061829 195062126 -22975032 + AluSx SINE Alu 1 297 -15 8539 141 35 30 chr3 195062126 195062611 -22974547 + L1MA3 LINE L1 5649 6130 -175 198 118 0 0 chr3 195062666 195062700 -22974458 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 1216 46 0 0 chr3 195062706 195062859 -22974299 - L1PA8 LINE L1 -30 6142 5990 1000 96 84 0 chr3 195062859 195063026 -22974132 + L1MA3 LINE L1 6124 6304 -1 31 0 0 0 chr3 195063026 195063057 -22974101 + AT_rich Low_complexity Low_complexity 1 31 0 309 228 25 0 chr3 195063273 195063352 -22973806 - Charlie5 DNA MER1_type -184 2428 2348 1300 81 0 0 chr3 195063678 195063839 -22973319 - AluSq SINE Alu -11 302 142 649 291 82 0 chr3 195063953 195064149 -22973009 - MIR SINE MIR -37 225 14 948 198 37 15 chr3 195064229 195064497 -22972661 - Charlie5 DNA MER1_type 0 2621 2348 777 176 0 113 chr3 195064491 195064589 -22972569 - Charlie5 DNA MER1_type -2424 200 138 * 1563 181 7 11 chr3 195064589 195064901 -22972257 + AluJb SINE Alu 7 317 0 777 176 0 113 chr3 195064901 195065023 -22972135 - Charlie5 DNA MER1_type -2486 138 4 495 267 35 0 chr3 195065028 195065144 -22972014 - MIR3 SINE MIR -50 158 39 25 0 0 0 chr3 195065394 195065419 -22971739 + AT_rich Low_complexity Low_complexity 1 25 0 374 253 0 80 chr3 195066342 195066504 -22970654 - L3 LINE CR1 -258 1319 1171 1143 220 36 3 chr3 195067018 195067175 -22969983 - L1MA10 LINE L1 -7 6327 6177 180 0 0 0 chr3 195067175 195067195 -22969963 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1143 220 36 3 chr3 195067195 195067350 -22969808 - L1MA10 LINE L1 -157 6177 6008 7294 45 25 16 chr3 195067351 195068800 -22968358 - SVA Other Other -875 1386 4 369 304 36 9 chr3 195068875 195068987 -22968171 - L2 LINE L2 0 3313 3199 2130 113 0 10 chr3 195069005 195069298 -22967860 + AluSx SINE Alu 1 290 -22 2043 125 3 0 chr3 195070064 195070360 -22966798 + AluSx SINE Alu 3 299 -13 821 252 73 19 chr3 195070452 195070765 -22966393 + L1ME3A LINE L1 5285 5614 -548 400 257 46 23 chr3 195070770 195070902 -22966256 + L1ME3A LINE L1 5769 5907 -263 1978 144 10 3 chr3 195070902 195071200 -22965958 + AluSx SINE Alu 1 300 -12 400 257 46 23 chr3 195071200 195071242 -22965916 + L1ME3A LINE L1 5907 5947 -223 239 312 0 46 chr3 195071325 195071434 -22965724 + L1ME3A LINE L1 5979 6082 -88 277 341 183 0 chr3 195072105 195072231 -22964927 - L2 LINE L2 0 3272 3124 1005 212 25 5 chr3 195072235 195072438 -22964720 + AluJb SINE Alu 61 267 -45 269 333 65 48 chr3 195073026 195073194 -22963964 + MER5B DNA MER1_type 5 175 -3 335 226 35 48 chr3 195073208 195073338 -22963820 + MIR SINE MIR 38 165 -61 1071 290 75 30 chr3 195073427 195073447 -22963711 + L2 LINE L2 1912 1930 -1384 2043 150 3 0 chr3 195073447 195073747 -22963411 + AluSx SINE Alu 1 301 -11 1071 290 75 30 chr3 195073747 195074191 -22962967 + L2 LINE L2 1930 2397 -917 248 202 119 60 chr3 195074191 195074275 -22962883 - MLT2D LTR ERVL -32 382 294 3406 256 35 47 chr3 195074377 195075467 -22961691 + HERVL40 LTR ERVL 3868 4944 -586 1433 231 84 9 chr3 195075483 195075911 -22961247 + LTR40c LTR ERVL 1 460 -5 277 130 0 37 chr3 195075990 195076044 -22961114 + MLT2F LTR ERVL 612 663 0 2039 164 129 92 chr3 195076056 195076709 -22960449 + L1ME1 LINE L1 5254 5936 -230 1608 207 128 93 chr3 195076709 195077279 -22959879 - MLT1E LTR MaLR -3 590 1 2039 164 129 92 chr3 195077279 195077322 -22959836 + L1ME1 LINE L1 5936 5976 -190 225 0 0 0 chr3 195077325 195077350 -22959808 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 219 114 0 0 chr3 195077578 195077613 -22959545 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1476 178 63 4 chr3 195077624 195077894 -22959264 - AluJb SINE Alu -25 287 2 243 0 0 0 chr3 195078156 195078183 -22958975 + (TTA)n Simple_repeat Simple_repeat 1 27 0 2188 105 7 0 chr3 195078190 195078484 -22958674 + AluSq SINE Alu 1 296 -17 2107 222 79 4 chr3 195078587 195079091 -22958067 - MER34 LTR ERV1 0 542 1 1894 149 3 3 chr3 195079277 195079572 -22957586 - AluSx SINE Alu -17 295 1 2352 75 3 0 chr3 195079946 195080238 -22956920 + AluSx SINE Alu 1 293 -19 197 33 33 0 chr3 195080238 195080268 -22956890 + (TA)n Simple_repeat Simple_repeat 2 32 0 67 42 0 0 chr3 195080333 195080428 -22956730 + AT_rich Low_complexity Low_complexity 1 95 0 277 140 35 0 chr3 195080429 195080486 -22956672 + L1MD2 LINE L1 5861 5919 -440 2147 82 0 0 chr3 195080618 195080888 -22956270 + AluY SINE Alu 32 301 -10 23 33 0 0 chr3 195081713 195081743 -22955415 + AT_rich Low_complexity Low_complexity 1 30 0 361 214 103 35 chr3 195082024 195082169 -22954989 + MER103 DNA DNA 12 166 0 26 30 0 0 chr3 195082179 195082212 -22954946 + AT_rich Low_complexity Low_complexity 1 33 0 345 53 96 0 chr3 195082431 195082525 -22954633 + (TA)n Simple_repeat Simple_repeat 2 104 0 320 291 65 13 chr3 195082589 195082819 -22954339 - L1MC4 LINE L1 -119 7923 7682 1002 230 43 69 chr3 195083030 195083334 -22953824 - AluJo SINE Alu -4 298 3 2214 91 0 47 chr3 195083850 195084170 -22952988 + AluSc SINE Alu 1 305 -4 220 204 0 0 chr3 195084275 195084319 -22952839 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 351 298 44 83 chr3 195084763 195084944 -22952214 + MER5B DNA MER1_type 2 175 -3 743 142 0 25 chr3 195085224 195085344 -22951814 + FRAM SINE Alu 41 157 -19 22 0 0 0 chr3 195086002 195086024 -22951134 + AT_rich Low_complexity Low_complexity 1 22 0 34 0 0 0 chr3 195086591 195086625 -22950533 + AT_rich Low_complexity Low_complexity 1 34 0 2207 96 0 4 chr3 195086636 195086917 -22950241 - AluSg SINE Alu -30 280 1 25 0 0 0 chr3 195086917 195086942 -22950216 + AT_rich Low_complexity Low_complexity 1 25 0 2084 115 3 0 chr3 195087335 195087623 -22949535 + AluSg SINE Alu 2 290 -20 23 0 0 0 chr3 195088080 195088103 -22949055 + AT_rich Low_complexity Low_complexity 1 23 0 1569 241 65 51 chr3 195088146 195088324 -22948834 + L1ME3A LINE L1 5465 5639 -531 755 258 32 32 chr3 195088324 195088541 -22948617 - MER20 DNA MER1_type 0 219 3 1569 241 65 51 chr3 195088541 195088989 -22948169 + L1ME3A LINE L1 5639 6100 -70 428 185 0 0 chr3 195088991 195089056 -22948102 + AluJ/FLAM SINE Alu 2 66 -246 22 56 0 0 chr3 195089475 195089511 -22947647 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr3 195090572 195090598 -22946560 + AT_rich Low_complexity Low_complexity 1 26 0 1281 134 4 97 chr3 195090676 195090770 -22946388 - L1MA2 LINE L1 -4 6300 6199 1500 197 27 17 chr3 195090770 195091064 -22946094 + AluJb SINE Alu 1 297 -15 1281 134 4 97 chr3 195091064 195091173 -22945985 - L1MA2 LINE L1 -105 6199 6125 1742 146 68 4 chr3 195091173 195091454 -22945704 + AluSx SINE Alu 1 299 -13 1281 134 4 97 chr3 195091454 195091518 -22945640 - L1MA2 LINE L1 -179 6125 6057 773 188 29 41 chr3 195091689 195091859 -22945299 + AluSq SINE Alu 104 271 -42 1865 163 14 46 chr3 195092594 195092721 -22944437 + L1PA16 LINE L1 5810 5939 -227 2205 110 0 3 chr3 195092721 195093020 -22944138 + AluSx SINE Alu 1 298 -14 1865 163 14 46 chr3 195093020 195093242 -22943916 + L1PA16 LINE L1 5939 6148 -18 1426 167 129 0 chr3 195093431 195093694 -22943464 - AluJb SINE Alu -15 297 1 339 209 30 0 chr3 195094217 195094284 -22942874 + AluJ/FLAM SINE Alu 1 69 -233 2120 117 10 0 chr3 195094343 195094634 -22942524 + AluSx SINE Alu 1 294 -18 2152 109 0 59 chr3 195094819 195095139 -22942019 + AluSx SINE Alu 1 301 -11 2398 74 0 7 chr3 195095139 195095437 -22941721 + AluSg SINE Alu 1 296 -14 2400 215 55 37 chr3 195095967 195096106 -22941052 + MLT1G LTR MaLR 1 136 -454 2349 85 0 7 chr3 195096106 195096413 -22940745 + AluSx SINE Alu 1 305 -7 2400 215 55 37 chr3 195096413 195096841 -22940317 + MLT1G LTR MaLR 136 578 -12 269 256 196 71 chr3 195097182 195097204 -22939954 + MER5A DNA MER1_type 1 19 -170 2786 167 30 45 chr3 195097204 195097743 -22939415 + LTR26B LTR ERV1 1 531 0 269 256 196 71 chr3 195097743 195097888 -22939270 + MER5A DNA MER1_type 19 189 0 498 207 99 0 chr3 195097939 195098060 -22939098 - MER21B LTR ERV1 -22 841 709 547 188 69 0 chr3 195098068 195098169 -22938989 - MER21B LTR ERV1 -309 554 447 410 235 26 72 chr3 195098272 195098425 -22938733 - MER21B LTR ERV1 -620 243 98 * 437 236 25 25 chr3 195098393 195098545 -22938613 - MER21B LTR ERV1 -403 202 17 351 289 215 15 chr3 195098552 195098591 -22938567 + L2 LINE L2 2026 2056 -1258 2155 124 0 0 chr3 195098591 195098889 -22938269 - AluSx SINE Alu -14 298 1 351 289 215 15 chr3 195098889 195099109 -22938049 + L2 LINE L2 2056 2337 -977 3574 125 80 39 chr3 195099134 195099462 -22937696 + MER41B LTR ERV1 1 314 -321 2150 110 0 7 chr3 195099462 195099762 -22937396 + AluSq SINE Alu 1 298 -15 3574 125 80 39 chr3 195099762 195100043 -22937115 + MER41B LTR ERV1 314 635 0 407 298 44 13 chr3 195100597 195100755 -22936403 - L2 LINE L2 -230 3083 2921 1081 106 0 7 chr3 195101051 195101193 -22935965 + AluSq/x SINE Alu 1 141 -171 2164 87 7 42 chr3 195101193 195101503 -22935655 + AluSx SINE Alu 1 299 -13 2249 114 0 0 chr3 195101507 195101805 -22935353 + AluSx SINE Alu 1 298 -14 282 143 0 0 chr3 195103208 195103250 -22933908 + 5S rRNA rRNA 2 43 -78 1370 132 203 8 chr3 195103458 195103709 -22933449 + AluSg1 SINE Alu 5 304 -5 203 233 33 0 chr3 195103879 195103939 -22933219 + T-rich Low_complexity Low_complexity 3 64 0 26 30 0 0 chr3 195104081 195104114 -22933044 + AT_rich Low_complexity Low_complexity 1 33 0 2284 95 3 3 chr3 195104394 195104689 -22932469 - AluSx SINE Alu -17 295 1 451 250 10 10 chr3 195104689 195104793 -22932365 - MLT1G LTR MaLR -450 140 37 2071 98 34 21 chr3 195104914 195105242 -22931916 - L1PA11 LINE L1 -32 6142 5811 1934 168 3 0 chr3 195105243 195105547 -22931611 - AluSx SINE Alu -7 305 1 580 142 0 94 chr3 195105547 195105653 -22931505 + Tigger2 DNA MER2_type 2622 2717 -1 550 273 15 0 chr3 195105698 195105830 -22931328 - MIR SINE MIR -61 201 68 567 158 0 42 chr3 195106474 195106569 -22930589 - FLAM_C SINE Alu -7 136 46 2133 122 0 0 chr3 195107572 195107866 -22929292 - AluSx SINE Alu -18 294 1 1857 120 25 4 chr3 195108195 195108470 -22928688 + AluSq SINE Alu 1 281 -32 197 369 36 36 chr3 195108485 195108596 -22928562 - L2 LINE L2 -4 3268 3158 399 246 48 87 chr3 195108915 195109041 -22928117 + MER5A DNA MER1_type 69 189 0 33 56 0 0 chr3 195110851 195110905 -22926253 + AT_rich Low_complexity Low_complexity 1 54 0 959 257 72 20 chr3 195111144 195111549 -22925609 + L1ME LINE L1 5262 5687 -483 273 93 58 12 chr3 195111630 195111716 -22925442 + (TA)n Simple_repeat Simple_repeat 1 90 0 499 263 114 53 chr3 195112093 195112321 -22924837 + MIR SINE MIR 1 242 -20 1511 223 43 5 chr3 195112473 195112849 -22924309 - L1MC4 LINE L1 -468 7574 7185 606 269 149 37 chr3 195112955 195113517 -22923641 - HAL1 LINE L1 -1093 1414 790 329 262 33 77 chr3 195113665 195113848 -22923310 - HAL1 LINE L1 -2319 188 14 326 250 23 23 chr3 195113937 195114025 -22923133 - L1M4 LINE L1 -1538 4608 4521 404 159 29 0 chr3 195115281 195115350 -22921808 + LTR48 LTR ERV1 381 451 -336 * 758 158 60 74 chr3 195115348 195115573 -22921585 + LTR48 LTR ERV1 418 787 0 187 375 16 0 chr3 195115841 195115905 -22921253 + L2 LINE L2 3116 3180 -92 380 304 53 29 chr3 195117518 195117689 -22919469 - MIR SINE MIR 0 262 88 2684 30 0 0 chr3 195119014 195119314 -22917844 + AluYa5 SINE Alu 1 300 -11 31 0 0 0 chr3 195119694 195119725 -22917433 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr3 195120671 195120692 -22916466 + AT_rich Low_complexity Low_complexity 1 21 0 212 315 45 0 chr3 195120843 195120932 -22916226 - MIR3 SINE MIR -13 195 103 277 302 32 0 chr3 195121619 195121682 -22915476 - L2 LINE L2 -42 3230 3166 2360 90 7 3 chr3 195121874 195122175 -22914983 + AluSq SINE Alu 1 302 -11 359 215 25 0 chr3 195122501 195122580 -22914578 + Charlie5 DNA MER1_type 2348 2428 -184 31 0 0 0 chr3 195122796 195122827 -22914331 + AT_rich Low_complexity Low_complexity 1 31 0 1093 96 84 0 chr3 195122827 195122994 -22914164 - L1MA3 LINE L1 -1 6304 6124 1292 46 0 0 chr3 195122994 195123147 -22914011 + L1PA8 LINE L1 5990 6142 -30 198 118 0 0 chr3 195123153 195123187 -22913971 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 9374 140 35 31 chr3 195123242 195123727 -22913431 - L1MA3 LINE L1 -175 6130 5649 2416 88 0 0 chr3 195123727 195124024 -22913134 - AluSx SINE Alu -15 297 1 9374 140 35 31 chr3 195124024 195126082 -22911076 - L1MA3 LINE L1 -656 5649 3574 682 173 0 39 chr3 195126084 195126211 -22910947 - AluSg/x SINE Alu -1 308 187 1180 134 8 47 chr3 195126213 195126466 -22910692 - L1MA3 LINE L1 -3650 2496 2254 388 231 198 0 chr3 195126466 195126587 -22910571 + MIR SINE MIR 93 237 -25 1238 211 104 4 chr3 195126614 195126719 -22910439 + AluJb SINE Alu 1 94 -218 222 37 0 0 chr3 195126719 195126746 -22910412 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1238 211 104 4 chr3 195126746 195126900 -22910258 + AluJb SINE Alu 94 286 -26 24 67 0 0 chr3 195126930 195126975 -22910183 + AT_rich Low_complexity Low_complexity 1 45 0 24 32 0 0 chr3 195127037 195127068 -22910090 + AT_rich Low_complexity Low_complexity 1 31 0 732 174 0 0 chr3 195127070 195127185 -22909973 - FLAM_C SINE Alu -27 116 2 2273 103 0 3 chr3 195127834 195128144 -22909014 - AluSq SINE Alu -4 309 1 201 175 25 0 chr3 195128580 195128620 -22908538 + L2 LINE L2 3271 3311 -2 201 200 0 0 chr3 195129270 195129305 -22907853 - L2 LINE L2 -13 3300 3266 2118 76 0 73 chr3 195130086 195130403 -22906755 - AluY SINE Alu -17 294 1 458 114 14 0 chr3 195130409 195130479 -22906679 - L1M4 LINE L1 -1235 4911 4841 879 240 72 19 chr3 195130628 195130912 -22906246 - L1M4 LINE L1 -1281 4865 4582 946 236 66 4 chr3 195130915 195131174 -22905984 - L1M4 LINE L1 -1608 4538 4264 1201 98 7 66 chr3 195131460 195132029 -22905129 - SVA Other Other -520 868 508 290 330 0 22 chr3 195132080 195132262 -22904896 + C-rich Low_complexity Low_complexity 1 178 0 263 280 28 21 chr3 195132200 195132343 -22904815 + (CCCCG)n Simple_repeat Simple_repeat 1 144 0 * 225 318 47 53 chr3 195332402 195332572 -22704586 - L2 LINE L2 -2 3311 3143 623 261 91 21 chr3 195334395 195335332 -22701826 + L1ME3A LINE L1 5103 6161 -9 21 0 0 0 chr3 195336642 195336663 -22700495 + AT_rich Low_complexity Low_complexity 1 21 0 384 278 113 45 chr3 195336742 195337008 -22700150 + L1ME4a LINE L1 5639 5922 -199 29 28 0 0 chr3 195337239 195337275 -22699883 + AT_rich Low_complexity Low_complexity 1 36 0 193 323 271 7 chr3 195337389 195337544 -22699614 - MIR SINE MIR -36 226 31 288 311 119 17 chr3 195338451 195338628 -22698530 - MIR SINE MIR -12 250 56 940 253 130 39 chr3 195338639 195339054 -22698104 + LTR33A LTR ERVL 7 459 -64 620 270 27 22 chr3 195339944 195340129 -22697029 - L2 LINE L2 0 3313 3128 2899 263 83 16 chr3 195340202 195340548 -22696610 + L2 LINE L2 1366 1687 -1627 2220 124 0 0 chr3 195340548 195340854 -22696304 - AluSx SINE Alu -6 306 1 2899 263 83 16 chr3 195340854 195341493 -22695665 + L2 LINE L2 1687 2417 -897 312 361 102 30 chr3 195341613 195341945 -22695213 - L2 LINE L2 -654 2660 2305 1549 217 21 27 chr3 195343304 195343584 -22693574 - MER77 LTR ERV1 -8 597 318 3210 60 22 40 chr3 195343584 195343842 -22693316 - MLT2A1 LTR ERVL 0 444 196 2066 111 3 32 chr3 195343842 195344158 -22693000 - AluSc SINE Alu -2 307 1 3210 60 22 40 chr3 195344158 195344351 -22692807 - MLT2A1 LTR ERVL -248 196 1 1549 217 21 27 chr3 195344351 195344406 -22692752 - MER77 LTR ERV1 -287 318 264 337 200 0 139 chr3 195344428 195344543 -22692615 - MER77 LTR ERV1 -309 296 198 236 301 0 19 chr3 195345157 195345314 -22691844 + A-rich Low_complexity Low_complexity 1 153 0 1034 212 0 5 chr3 195348447 195348640 -22688518 - MER77 LTR ERV1 -410 195 4 227 141 28 56 chr3 195348721 195348792 -22688366 + T-rich Low_complexity Low_complexity 4 72 0 2114 99 35 3 chr3 195349455 195349737 -22687421 - AluSx SINE Alu -17 295 5 378 250 57 16 chr3 195349833 195349957 -22687201 + MLT1I LTR MaLR 276 404 -5 224 388 52 0 chr3 195349961 195350095 -22687063 + MIR3 SINE MIR 47 187 -21 198 214 369 10 chr3 195350108 195350211 -22686947 + MIR SINE MIR 15 154 -108 216 282 106 24 chr3 195351561 195351646 -22685512 - L2 LINE L2 -4 3268 3177 197 213 0 85 chr3 195354722 195354769 -22682389 + L2 LINE L2 3221 3263 -9 356 210 160 25 chr3 195354917 195355036 -22682122 - L2 LINE L2 0 3272 3138 1105 114 0 27 chr3 195355064 195355248 -22681910 - L1P LINE L1 -3066 3080 2902 3889 70 10 2 chr3 195355248 195355764 -22681394 + L1PA8 LINE L1 5653 6172 0 29 0 0 0 chr3 195355764 195355793 -22681365 + AT_rich Low_complexity Low_complexity 1 29 0 208 276 17 0 chr3 195355853 195355911 -22681247 - L2 LINE L2 -199 3073 3015 698 284 170 15 chr3 195355981 195356382 -22680776 + L1MC4a LINE L1 6284 6746 -1062 * 817 174 61 138 chr3 195356377 195356738 -22680420 + L1MC4 LINE L1 6896 7228 -814 22 35 0 0 chr3 195357077 195357106 -22680052 + AT_rich Low_complexity Low_complexity 1 29 0 1886 119 19 13 chr3 195357222 195357532 -22679626 - L1PA13 LINE L1 -2 6161 5850 1954 145 3 3 chr3 195357573 195357877 -22679281 - AluJb SINE Alu -8 304 1 209 370 55 24 chr3 195358734 195358861 -22678297 - L2 LINE L2 0 3272 3142 868 330 54 19 chr3 195358867 195359291 -22677867 + MLT1J2 LTR MaLR 11 449 -1 460 317 134 36 chr3 195359833 195360057 -22677101 + MIR SINE MIR 12 257 -5 205 373 161 12 chr3 195360548 195360870 -22676288 + L2 LINE L2 2605 2974 -340 413 263 38 30 chr3 195361214 195361347 -22675811 + MIR SINE MIR 66 199 -63 22 0 0 0 chr3 195361358 195361380 -22675778 + AT_rich Low_complexity Low_complexity 1 22 0 207 196 22 0 chr3 195361686 195361732 -22675426 + CT-rich Low_complexity Low_complexity 2 48 0 342 242 15 68 chr3 195362165 195362232 -22674926 + L1ME3A LINE L1 5742 5800 -370 967 214 11 0 chr3 195362232 195362419 -22674739 + MER5A DNA MER1_type 1 189 0 342 242 15 68 chr3 195362419 195362483 -22674675 + L1ME3A LINE L1 5800 5866 -304 * 523 176 0 109 chr3 195362467 195362632 -22674526 + L1ME3A LINE L1 5820 5966 -204 334 206 6 0 chr3 195362656 195362726 -22674432 - MER45 DNA AcHobo -5 1576 102 24 0 0 0 chr3 195364048 195364072 -22673086 + AT_rich Low_complexity Low_complexity 1 24 0 2856 111 48 2 chr3 195364421 195364879 -22672279 - L1MA5A LINE L1 -3 6294 5816 843 76 0 0 chr3 195364889 195364994 -22672164 + AluSc SINE Alu 1 105 -204 11247 160 40 7 chr3 195365069 195365359 -22671799 - L1MA5A LINE L1 -511 5786 5507 234 0 0 0 chr3 195365359 195365385 -22671773 + (TTG)n Simple_repeat Simple_repeat 2 27 0 11247 160 40 7 chr3 195365385 195367770 -22669388 - L1MA5A LINE L1 -790 5507 3022 31 44 0 0 chr3 195368403 195368448 -22668710 + AT_rich Low_complexity Low_complexity 1 45 0 35 41 0 0 chr3 195368621 195368670 -22668488 + AT_rich Low_complexity Low_complexity 1 49 0 2614 92 42 0 chr3 195368893 195369253 -22667905 - THE1C LTR MaLR 0 375 1 316 278 66 20 chr3 195369510 195369661 -22667497 - L1MC4 LINE L1 -1096 6946 6789 645 277 71 40 chr3 195369678 195370071 -22667087 + LTR16C LTR ERVL 24 486 -5 1831 118 8 4 chr3 195370099 195370361 -22666797 + AluSq SINE Alu 25 287 -26 316 309 146 22 chr3 195371053 195371231 -22665927 - MIR SINE MIR -3 259 60 205 291 35 47 chr3 195371248 195371387 -22665771 + MIR SINE MIR 11 144 -64 954 162 191 102 chr3 195372528 195372911 -22664247 - MSTC LTR MaLR -11 417 1 1759 198 34 78 chr3 195373038 195373448 -22663710 + L1MA1 LINE L1 503 894 -6671 * 14602 159 33 17 chr3 195373432 195374625 -22662533 + L1MA1 LINE L1 1733 2905 -4816 578 27 0 0 chr3 195374625 195374700 -22662458 + L1PA3 LINE L1 6081 6155 0 14602 159 33 17 chr3 195374700 195375997 -22661161 + L1MA1 LINE L1 2905 4180 -3541 1790 146 63 28 chr3 195375997 195376359 -22660799 - THE1C LTR MaLR 0 375 1 14602 159 33 17 chr3 195376359 195377667 -22659491 + L1MA1 LINE L1 4180 5466 -2255 1967 151 3 3 chr3 195377667 195377971 -22659187 + AluSg SINE Alu 1 304 -6 14602 159 33 17 chr3 195377971 195379954 -22657204 + L1MA1 LINE L1 5466 7621 -100 2759 32 0 0 chr3 195379954 195380262 -22656896 - AluY SINE Alu -3 308 1 14602 159 33 17 chr3 195380262 195380358 -22656800 + L1MA1 LINE L1 7621 7714 -7 2145 156 17 0 chr3 195380695 195381055 -22656103 + MER47A DNA MER2_type 1 366 0 650 314 112 10 chr3 195383230 195383533 -22653625 - MLT1I LTR MaLR -8 401 68 923 196 105 13 chr3 195383631 195383860 -22653298 - L1MC3 LINE L1 -346 7439 7190 283 316 0 0 chr3 195383860 195383939 -22653219 - MLT1F1 LTR MaLR -442 125 47 272 330 100 10 chr3 195383947 195384047 -22653111 - MIR SINE MIR -61 147 39 220 340 113 0 chr3 195385141 195385247 -22651911 + L2 LINE L2 3190 3307 -6 567 301 43 46 chr3 195385676 195386021 -22651137 + L1ME LINE L1 5479 5822 -299 4586 191 72 8 chr3 195386040 195387190 -22649968 - L1P4 LINE L1 -394 5772 4698 215 91 0 23 chr3 195387190 195387234 -22649924 + (TTTTA)n Simple_repeat Simple_repeat 4 46 0 8356 34 3 5 chr3 195387234 195389020 -22648138 - L1PA3 LINE L1 -13 6142 4356 4586 191 72 8 chr3 195389020 195389141 -22648017 - L1P4 LINE L1 -1468 4698 4586 342 0 0 0 chr3 195389141 195389179 -22647979 + (TG)n Simple_repeat Simple_repeat 2 39 0 4586 191 72 8 chr3 195389179 195389454 -22647704 - L1P4 LINE L1 -1580 4586 4125 22 35 0 0 chr3 195389454 195389483 -22647675 + AT_rich Low_complexity Low_complexity 1 29 0 2186 262 66 50 chr3 195389493 195390484 -22646674 - HAL1 LINE L1 -3 2504 1499 872 259 57 12 chr3 195390487 195390734 -22646424 - MIR SINE MIR -1 261 4 1457 285 108 53 chr3 195390734 195391320 -22645838 - HAL1 LINE L1 -1009 1498 945 2087 129 0 0 chr3 195391320 195391614 -22645544 - AluSq SINE Alu -19 294 1 1457 285 108 53 chr3 195391614 195392078 -22645080 - HAL1 LINE L1 -1562 945 391 661 150 18 0 chr3 195393013 195393126 -22644032 - MSTA LTR MaLR 0 428 314 268 301 36 24 chr3 195393370 195393453 -22643705 - L2 LINE L2 0 3272 3189 400 286 88 11 chr3 195394915 195395097 -22642061 - MER117 DNA MER1_type 0 197 2 5276 146 26 56 chr3 195395141 195396254 -22640904 - L1MA10 LINE L1 -7 6327 5249 344 297 10 0 chr3 195396254 195396355 -22640803 + MER117 DNA MER1_type 96 197 0 21 36 0 0 chr3 195396451 195396479 -22640679 + AT_rich Low_complexity Low_complexity 1 28 0 297 332 57 14 chr3 195397895 195398106 -22639052 + HAL1 LINE L1 2282 2501 -6 225 94 0 0 chr3 195398109 195398141 -22639017 + (GA)n Simple_repeat Simple_repeat 1 32 0 201 176 0 0 chr3 195399586 195399620 -22637538 + T-rich Low_complexity Low_complexity 1 34 0 551 239 45 107 chr3 195399624 195399867 -22637291 + MER102a DNA MER1_type 87 314 -16 1307 242 56 45 chr3 195400151 195400613 -22636545 - MLT1C LTR MaLR 0 467 1 196 191 0 138 chr3 195400765 195400859 -22636299 + L3b LINE CR1 1286 1366 -217 655 165 0 75 chr3 195400998 195401131 -22636027 - MER63 DNA MER1_type -87 749 1 453 201 95 39 chr3 195401727 195401906 -22635252 - L1MB8 LINE L1 -42 6136 5948 2096 131 7 0 chr3 195402355 195402660 -22634498 + AluSx SINE Alu 6 312 0 406 239 102 48 chr3 195402866 195403033 -22634125 - L2 LINE L2 -4 3309 3134 657 267 48 21 chr3 195404017 195404211 -22632947 + MIR SINE MIR 51 249 -13 1385 194 34 92 chr3 195404638 195404698 -22632460 + MLT1A1 LTR MaLR 6 68 -297 451 57 0 14 chr3 195404698 195404768 -22632390 + L1PA4 LINE L1 6085 6153 -2 1385 194 34 92 chr3 195404768 195405089 -22632069 + MLT1A1 LTR MaLR 68 365 0 765 211 64 5 chr3 195405378 195405572 -22631586 - MER69 DNA AcHobo 0 2526 2318 378 61 0 0 chr3 195405572 195405621 -22631537 + (CA)n Simple_repeat Simple_repeat 2 50 0 10230 226 31 11 chr3 195405631 195405819 -22631339 - L1MC1 LINE L1 -184 6429 6246 4072 60 2 2 chr3 195405819 195406338 -22630820 - L1PA7 LINE L1 -1 6153 5635 10230 226 31 11 chr3 195406338 195409578 -22627580 - L1MC1 LINE L1 -367 6246 2865 7437 159 35 70 chr3 195409573 195410693 -22626465 - L1MC1 LINE L1 -4760 1666 625 * 1991 144 96 18 chr3 195410693 195411090 -22626068 - MSTA LTR MaLR 0 428 1 7437 159 35 70 chr3 195411090 195411661 -22625497 - L1MC1 LINE L1 -5801 625 35 435 233 42 0 chr3 195411661 195411781 -22625377 - MER69 DNA AcHobo -182 2344 2220 8304 159 11 28 chr3 195411792 195413301 -22623857 + L1P LINE L1 12 1495 -4651 2393 191 35 20 chr3 195413774 195414324 -22622834 - L1MB4 LINE L1 -1 6179 5622 1317 167 50 57 chr3 195414345 195414752 -22622406 - L1MB4 LINE L1 -632 5548 5152 4323 20 8 0 chr3 195415996 195416505 -22620653 - L1PA3 LINE L1 -383 5772 5260 3275 26 0 0 chr3 195416505 195416885 -22620273 + L1PA3 LINE L1 5772 6153 -2 202 188 0 0 chr3 195417325 195417357 -22619801 + (TG)n Simple_repeat Simple_repeat 1 32 0 491 167 111 9 chr3 195417858 195417966 -22619192 + L2 LINE L2 3195 3313 0 215 381 144 6 chr3 195418416 195418589 -22618569 - MIR SINE MIR -38 224 28 590 226 24 60 chr3 195419512 195419680 -22617478 - MIR SINE MIR -81 181 20 262 227 102 47 chr3 195419875 195420003 -22617155 - L1ME3A LINE L1 -7 6163 6029 310 335 53 20 chr3 195420871 195421023 -22616135 + L1M4b LINE L1 1292 1448 -5411 472 269 99 47 chr3 195421123 195421376 -22615782 + L1M4b LINE L1 1708 1973 -4986 22 70 0 0 chr3 195421488 195421531 -22615627 + AT_rich Low_complexity Low_complexity 1 43 0 407 319 97 49 chr3 195421730 195421956 -22615202 + MIR SINE MIR 26 262 0 258 138 15 92 chr3 195422425 195422490 -22614668 + MIR SINE MIR 130 189 -73 21 36 0 0 chr3 195422617 195422645 -22614513 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr3 195423393 195423428 -22613730 + AT_rich Low_complexity Low_complexity 1 35 0 835 120 73 52 chr3 195423428 195423619 -22613539 - L1MA4 LINE L1 -5 6295 6101 395 314 78 85 chr3 195423625 195424297 -22612861 + L2 LINE L2 2599 3266 -6 1346 87 0 0 chr3 195424339 195424512 -22612646 + AluSg/x SINE Alu 137 309 -3 310 308 62 27 chr3 195424891 195425037 -22612121 + L2 LINE L2 3121 3271 -1 229 249 17 17 chr3 195425037 195425106 -22612052 + GA-rich Low_complexity Low_complexity 2 116 0 214 303 92 37 chr3 195425153 195425262 -22611896 - MIR SINE MIR -67 141 27 424 284 111 13 chr3 195426225 195426539 -22610619 + MLT1K LTR MaLR 194 560 -28 580 271 0 0 chr3 195426933 195427051 -22610107 - FLAM_A SINE Alu -12 121 4 433 371 56 72 chr3 195427384 195427954 -22609204 + L2 LINE L2 2715 3272 0 2199 126 0 0 chr3 195428288 195428598 -22608560 + AluSx SINE Alu 1 310 -2 558 163 0 0 chr3 195428743 195428829 -22608329 + AluSg/x SINE Alu 208 293 -19 1899 131 29 0 chr3 195429227 195429502 -22607656 - AluSq SINE Alu -30 283 1 515 226 105 11 chr3 195429545 195429726 -22607432 - Charlie7 DNA MER1_type -916 1696 1499 385 328 96 43 chr3 195429912 195430287 -22606871 + L1ME4a LINE L1 5006 5400 -746 474 326 49 13 chr3 195430343 195430729 -22606429 + L1MC4a LINE L1 5631 6030 -1778 204 386 151 26 chr3 195431191 195431582 -22605576 - L2 LINE L2 -5 3267 2828 306 252 277 17 chr3 195431635 195431754 -22605404 - MER5A DNA MER1_type -1 188 39 472 306 90 22 chr3 195432494 195432716 -22604442 - MIR SINE MIR -6 256 20 253 330 191 35 chr3 195432737 195433433 -22603725 - L2 LINE L2 -899 2415 1611 323 210 0 12 chr3 195433740 195433821 -22603337 + (TATATG)n Simple_repeat Simple_repeat 2 81 0 495 361 77 23 chr3 195436198 195436589 -22600569 - L2 LINE L2 -829 2485 2074 477 319 121 59 chr3 195436745 195437083 -22600075 - MLT1J LTR MaLR -38 473 115 208 237 0 0 chr3 195437752 195437790 -22599368 + (TG)n Simple_repeat Simple_repeat 1 38 0 293 159 16 0 chr3 195438420 195438483 -22598675 + (TA)n Simple_repeat Simple_repeat 1 64 0 21 0 0 0 chr3 195438512 195438533 -22598625 + AT_rich Low_complexity Low_complexity 1 21 0 299 252 107 70 chr3 195439182 195439523 -22597635 + MLT1J LTR MaLR 218 569 -19 216 0 0 0 chr3 195439526 195439550 -22597608 + (A)n Simple_repeat Simple_repeat 1 24 0 286 214 78 39 chr3 195439727 195439830 -22597328 + L1ME4a LINE L1 5467 5573 -548 871 260 50 11 chr3 195439873 195440150 -22597008 + L1ME3A LINE L1 4996 5283 -863 342 217 120 0 chr3 195440141 195440233 -22596925 + L1ME3A LINE L1 5519 5621 -545 * 835 248 91 38 chr3 195440246 195440585 -22596573 + L1ME3A LINE L1 5809 6165 -5 288 260 163 13 chr3 195440596 195440823 -22596335 + L1ME4a LINE L1 5757 6017 -104 381 267 67 39 chr3 195441302 195441557 -22595601 + L1M4 LINE L1 5140 5401 -745 4545 268 92 20 chr3 195441697 195444277 -22592881 + L1MEc LINE L1 37 2791 -3424 4158 250 108 33 chr3 195444279 195444833 -22592325 + L1MEc LINE L1 3001 3512 -2703 2004 99 60 0 chr3 195444833 195445115 -22592043 + AluSp SINE Alu 2 300 -13 4158 250 108 33 chr3 195445115 195446458 -22590700 + L1MEc LINE L1 3512 5039 -1176 447 311 133 34 chr3 195446469 195446770 -22590388 - L2 LINE L2 -283 3030 2702 * 460 234 82 121 chr3 195446766 195446997 -22590161 + L2 LINE L2 1635 1856 -1458 888 222 104 86 chr3 195447006 195447376 -22589782 - L1MC5 LINE L1 -58 7903 7516 494 261 15 30 chr3 195447376 195447510 -22589648 + MER94 DNA DNA 3 134 0 888 222 104 86 chr3 195447510 195447733 -22589425 - L1MC5 LINE L1 -445 7516 7299 3247 272 91 41 chr3 195447767 195449170 -22587988 + L2 LINE L2 1826 3313 0 742 336 154 18 chr3 195449174 195449796 -22587362 - L2 LINE L2 -614 2700 1994 295 281 94 0 chr3 195450206 195450302 -22586856 - MER117 DNA MER1_type -65 132 28 261 303 62 35 chr3 195450660 195450805 -22586353 + MIR SINE MIR 95 243 -19 1588 237 82 59 chr3 195450812 195451230 -22585928 - MLT1F LTR MaLR -3 527 92 2168 96 4 0 chr3 195451230 195451533 -22585625 + AluSx SINE Alu 1 304 0 1588 237 82 59 chr3 195451533 195451624 -22585534 - MLT1F LTR MaLR -438 92 5 294 148 0 0 chr3 195451764 195451818 -22585340 + (TC)n Simple_repeat Simple_repeat 2 55 0 285 100 0 0 chr3 195451818 195451868 -22585290 + (CA)n Simple_repeat Simple_repeat 1 50 0 708 93 0 9 chr3 195451923 195452031 -22585127 - L1MC3 LINE L1 -1 7784 7678 205 83 28 28 chr3 195452651 195452687 -22584471 - MIR SINE MIR -110 152 117 397 299 122 23 chr3 195453481 195453702 -22583456 - MIR SINE MIR -13 249 7 * 566 303 9 24 chr3 195453700 195453911 -22583247 + MIR SINE MIR 7 214 -48 576 293 98 19 chr3 195454128 195454394 -22582764 - LTR16C LTR ERVL -13 478 192 256 299 6 6 chr3 195454681 195454848 -22582310 + GA-rich Low_complexity Low_complexity 5 171 0 291 250 36 36 chr3 195455436 195455520 -22581638 + MIR3 SINE MIR 74 157 -51 513 257 75 28 chr3 195455564 195455778 -22581380 - Charlie8 DNA MER1_type -2152 265 42 202 358 130 14 chr3 195456873 195457088 -22580070 - L2 LINE L2 -2485 829 590 249 194 48 65 chr3 195457381 195457443 -22579715 + MIR SINE MIR 23 83 -179 1504 211 55 47 chr3 195457452 195457939 -22579219 - MER69 DNA AcHobo -36 2490 2000 * 1971 234 148 12 chr3 195457925 195458425 -22578733 - MER69 DNA AcHobo -1958 568 1 292 272 62 0 chr3 195458475 195458556 -22578602 + MIR SINE MIR 160 245 -17 25 31 0 0 chr3 195459545 195459577 -22577581 + AT_rich Low_complexity Low_complexity 1 32 0 656 309 160 13 chr3 195459969 195460351 -22576807 - LTR16A LTR ERVL 0 450 13 624 325 74 0 chr3 195460627 195460858 -22576300 - LTR16A LTR ERVL -200 250 3 23 0 0 0 chr3 195460969 195460992 -22576166 + AT_rich Low_complexity Low_complexity 1 23 0 2149 116 3 26 chr3 195461124 195461434 -22575724 + AluSx SINE Alu 2 304 -8 1110 219 4 21 chr3 195462202 195462439 -22574719 - AluJb SINE Alu -4 308 76 294 301 117 0 chr3 195462457 195462560 -22574598 + L2 LINE L2 3199 3313 0 1832 164 3 13 chr3 195462602 195462914 -22574244 - AluJb SINE Alu -3 309 1 498 325 36 6 chr3 195462991 195463157 -22574001 - MIR3 SINE MIR -8 200 30 683 295 178 42 chr3 195464069 195464906 -22572252 - L2 LINE L2 -43 3270 2312 333 280 46 57 chr3 195465422 195465597 -22571561 + MIR SINE MIR 13 185 -77 710 143 0 0 chr3 195465888 195465993 -22571165 - AluSx SINE Alu -14 295 191 973 129 7 0 chr3 195465994 195466133 -22571025 - AluSx SINE Alu -172 141 2 180 0 0 0 chr3 195466151 195466171 -22570987 + (A)n Simple_repeat Simple_repeat 1 20 0 1555 159 86 21 chr3 195466249 195466576 -22570582 + MSTB LTR MaLR 12 359 -67 1405 174 8 28 chr3 195466696 195466949 -22570209 - AluJb SINE Alu -64 248 1 2249 90 3 0 chr3 195467253 195467565 -22569593 - L1PA13 LINE L1 -4 6159 5847 24 0 0 0 chr3 195467671 195467695 -22569463 + AT_rich Low_complexity Low_complexity 1 24 0 316 363 158 21 chr3 195468908 195469148 -22568010 - L2 LINE L2 -5 3267 2995 206 118 0 0 chr3 195469414 195469448 -22567710 + (CA)n Simple_repeat Simple_repeat 2 35 0 1837 179 100 60 chr3 195469576 195470044 -22567114 + MLT2B1 LTR ERVL 1 487 -33 1245 193 24 79 chr3 195470134 195470467 -22566691 - Tigger7 DNA MER2_type -13 2478 2 231 164 0 66 chr3 195470484 195470545 -22566613 + MLT2B1 LTR ERVL 464 520 0 964 254 69 16 chr3 195470545 195470864 -22566294 + HERVL-B1 LTR ERVL 1 336 -5318 * 3322 176 14 2 chr3 195470860 195471418 -22565740 + ERVL LTR ERVL 3294 3858 -1906 259 218 18 0 chr3 195471552 195471607 -22565551 - L2 LINE L2 -21 3292 3237 330 256 67 78 chr3 195471610 195471790 -22565368 - MLT1J2 LTR MaLR -8 442 265 469 221 29 0 chr3 195471844 195471948 -22565210 - MLT1J1 LTR MaLR -338 108 2 325 246 119 0 chr3 195471948 195472074 -22565084 - L2 LINE L2 -70 3243 3103 720 121 81 27 chr3 195472105 195472254 -22564904 + MER104 DNA Tc2 3 159 -21 1874 197 5 22 chr3 195472256 195472627 -22564531 - MLT1A1 LTR MaLR 0 365 1 674 314 36 8 chr3 195472642 195472890 -22564268 - L2 LINE L2 -243 3070 2816 234 331 73 7 chr3 195472891 195473027 -22564131 + MIR SINE MIR 86 230 -32 34 55 0 0 chr3 195473343 195473398 -22563760 + AT_rich Low_complexity Low_complexity 1 55 0 705 153 0 0 chr3 195473400 195473511 -22563647 + FLAM_C SINE Alu 1 111 -32 289 317 77 0 chr3 195473582 195473686 -22563472 - MIR3 SINE MIR -16 192 81 351 278 0 70 chr3 195474209 195474324 -22562834 - MIR SINE MIR -85 123 17 311 247 12 12 chr3 195475245 195475330 -22561828 - MER94 DNA DNA -49 85 1 219 387 66 28 chr3 195475415 195475521 -22561637 - L2 LINE L2 -11 3261 3152 22 0 0 0 chr3 195476386 195476408 -22560750 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr3 195476474 195476501 -22560657 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr3 195477513 195477536 -22559622 + AT_rich Low_complexity Low_complexity 1 23 0 315 309 138 0 chr3 195477551 195477674 -22559484 - MIR SINE MIR -89 173 34 360 232 49 46 chr3 195479237 195479424 -22557734 + MLT1J1 LTR MaLR 263 446 0 182 311 0 49 chr3 195480770 195480831 -22556327 + L2 LINE L2 3239 3296 -17 211 170 0 38 chr3 195481483 195481536 -22555622 + A-rich Low_complexity Low_complexity 6 56 0 18753 62 9 0 chr3 195481661 195483504 -22553654 + L1PA6 LINE L1 2889 4768 -1386 207 0 0 0 chr3 195483504 195483527 -22553631 + (CTATA)n Simple_repeat Simple_repeat 1 23 0 18753 62 9 0 chr3 195483527 195484922 -22552236 + L1PA6 LINE L1 4768 6149 -5 741 204 107 41 chr3 195484942 195485212 -22551946 - MER69 DNA AcHobo -308 2218 1931 258 207 0 0 chr3 195485281 195485339 -22551819 + (TA)n Simple_repeat Simple_repeat 2 59 0 1174 248 40 66 chr3 195485403 195485497 -22551661 - MER69 DNA AcHobo -2141 385 290 7649 22 3 1 chr3 195485497 195486992 -22550166 + L1PA3 LINE L1 4657 6152 -3 1174 248 40 66 chr3 195486992 195487292 -22549866 - MER69 DNA AcHobo -2236 290 1 1772 149 69 34 chr3 195487310 195487660 -22549498 + THE1C LTR MaLR 1 362 -13 185 261 14 72 chr3 195487702 195487771 -22549387 + L2 LINE L2 3244 3308 -5 192 77 0 0 chr3 195487941 195487967 -22549191 + (A)n Simple_repeat Simple_repeat 1 26 0 2677 32 3 0 chr3 195488261 195488569 -22548589 - AluY SINE Alu -2 309 1 912 294 107 24 chr3 195488987 195489399 -22547759 - MLT1J1 LTR MaLR 0 446 1 417 39 0 0 chr3 195490113 195490164 -22546994 + (CA)n Simple_repeat Simple_repeat 2 52 0 359 248 43 75 chr3 195490592 195490753 -22546405 - L2 LINE L2 -8 3305 3150 545 326 222 14 chr3 195490802 195491234 -22545924 - L2 LINE L2 -339 2975 2454 230 274 137 0 chr3 195491288 195491361 -22545797 - L2 LINE L2 0 3272 3190 212 333 117 39 chr3 195491373 195491604 -22545554 - L2 LINE L2 -700 2614 2366 444 302 28 66 chr3 195491630 195491785 -22545373 - MIR SINE MIR -10 252 106 1084 37 0 0 chr3 195491785 195491919 -22545239 + L1PA5 LINE L1 6021 6154 0 444 302 28 66 chr3 195491919 195491975 -22545183 - MIR SINE MIR -156 106 49 575 255 64 0 chr3 195492103 195492260 -22544898 + LTR16C LTR ERVL 325 491 0 232 298 36 24 chr3 195492983 195493067 -22544091 - MIR SINE MIR -67 141 57 32 0 0 0 chr3 195493074 195493106 -22544052 + AT_rich Low_complexity Low_complexity 1 32 0 309 176 44 0 chr3 195493111 195493179 -22543979 - L1PB4 LINE L1 -12 6144 6074 4661 48 0 0 chr3 195494387 195494973 -22542185 - L1P LINE L1 -951 5195 4610 6054 38 5 4 chr3 195495000 195495741 -22541417 + L1PA5 LINE L1 5413 6154 0 232 292 168 26 chr3 195495909 195496022 -22541136 - L2 LINE L2 -3 3269 3141 307 372 61 20 chr3 195496318 195496466 -22540692 + MIR3 SINE MIR 27 180 -28 294 292 91 25 chr3 195498572 195498763 -22538395 - MLT1L LTR MaLR -47 540 298 343 302 86 70 chr3 195500058 195500359 -22536799 - MLT1K LTR MaLR -158 430 125 249 57 0 0 chr3 195500436 195500471 -22536687 + (TAA)n Simple_repeat Simple_repeat 2 36 0 9902 94 3 12 chr3 195501056 195502515 -22534643 + L1P LINE L1 1024 2470 -3676 447 193 33 160 chr3 195502618 195502768 -22534390 - L1M1 LINE L1 -6756 809 679 337 271 181 12 chr3 195503162 195503328 -22533830 - MIR SINE MIR -49 213 20 299 279 25 0 chr3 195503515 195503594 -22533564 - L2 LINE L2 0 3313 3233 2260 111 3 0 chr3 195504373 195504679 -22532479 + AluSx SINE Alu 1 307 -5 204 40 0 0 chr3 195505901 195505926 -22531232 + (CATGC)n Simple_repeat Simple_repeat 4 28 0 25 31 0 0 chr3 195506464 195506496 -22530662 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr3 195507468 195507497 -22529661 + AT_rich Low_complexity Low_complexity 1 29 0 2374 219 0 5 chr3 195508158 195508602 -22528556 - MER82 DNA MER2_type -9 644 203 556 275 7 14 chr3 195509081 195509223 -22527935 - MER82 DNA MER2_type -511 142 2 246 316 0 0 chr3 195509559 195509638 -22527520 + L1MC4 LINE L1 6621 6699 -1343 748 231 64 126 chr3 195509679 195510021 -22527137 - MLT1A1 LTR MaLR -24 341 21 1908 264 100 66 chr3 195510431 195511310 -22525848 - L2 LINE L2 -963 2351 1443 327 291 104 17 chr3 195511559 195511800 -22525358 + L1M4 LINE L1 3625 3886 -2260 386 277 38 66 chr3 195511992 195512567 -22524591 + L1M4 LINE L1 3952 4629 -1517 1791 214 41 43 chr3 195513109 195513595 -22523563 + MLT1D LTR MaLR 21 505 0 2517 56 0 0 chr3 195514676 195514982 -22522176 + AluY SINE Alu 2 307 -4 25 37 0 37 chr3 195515568 195515599 -22521559 + AT_rich Low_complexity Low_complexity 1 31 -21 2236 100 10 0 chr3 195515599 195515900 -22521258 + AluSx SINE Alu 1 304 -8 25 37 0 37 chr3 195515900 195515922 -22521236 + AT_rich Low_complexity Low_complexity 31 52 0 850 104 28 28 chr3 195516000 195516144 -22521014 - L1MB1 LINE L1 -17 6172 6029 994 168 0 12 chr3 195516146 195516313 -22520845 - AluSp SINE Alu -2 311 147 261 0 0 0 chr3 195516329 195516358 -22520800 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7704 26 0 0 chr3 195516850 195517936 -22519222 - L1PA3 LINE L1 -1 6154 5068 22778 31 1 0 chr3 195517936 195520687 -22516471 + L1PA3 LINE L1 2315 5068 -1078 625 343 44 44 chr3 195520840 195521269 -22515889 + MLT1K LTR MaLR 151 579 -9 2799 3 0 0 chr3 195522160 195522461 -22514697 + AluYa5 SINE Alu 1 301 -10 1835 203 18 40 chr3 195523180 195523633 -22513525 - LTR47B LTR ERVL 0 443 1 560 160 35 112 chr3 195524027 195524196 -22512962 - MIR SINE MIR -11 251 96 10365 128 11 16 chr3 195574277 195575902 -22461256 - LTR57-int LTR ERVL -3727 1616 1 295 197 45 0 chr3 195575909 195575975 -22461183 - LTR57 LTR ERVL -7 404 336 195 262 97 58 chr3 195576011 195576114 -22461044 + MIR3 SINE MIR 58 164 -44 382 71 0 0 chr3 195576384 195576440 -22460718 - L1PA6 LINE L1 0 6154 6099 10923 67 15 1 chr3 195576440 195577931 -22459227 - L1P LINE L1 -2982 3164 1652 7451 90 11 12 chr3 195578031 195579148 -22458010 + L1P LINE L1 2162 3276 -2870 10525 124 10 27 chr3 195579153 195580809 -22456349 + L1P LINE L1 13 1639 -4507 728 73 0 0 chr3 195580909 195581005 -22456153 + MER9 LTR ERVK 416 511 0 381 266 127 64 chr3 195581189 195581362 -22455796 + MER5A DNA MER1_type 3 186 -3 329 167 28 0 chr3 195582003 195582075 -22455083 + GA-rich Low_complexity Low_complexity 4 77 0 708 144 0 0 chr3 195583196 195583300 -22453858 + U6 snRNA snRNA 1 104 -3 377 113 16 0 chr3 195583482 195583544 -22453614 - Charlie5 DNA MER1_type -32 2580 2518 310 291 71 55 chr3 195583689 195583871 -22453287 + L2 LINE L2 2874 3058 -214 1357 133 26 30 chr3 195583894 195584177 -22452981 + L1MC2 LINE L1 5684 5965 -379 7649 158 40 38 chr3 195584277 195584748 -22452410 + L1MA7 LINE L1 3754 4223 -2068 796 164 0 8 chr3 195584748 195584882 -22452276 + FLAM_C SINE Alu 1 133 0 7649 158 40 38 chr3 195584882 195586161 -22450997 + L1MA7 LINE L1 4223 5529 -762 252 88 0 0 chr3 195586161 195586195 -22450963 - THE1B LTR MaLR -5 359 326 7649 158 40 38 chr3 195586195 195586746 -22450412 + L1MA7 LINE L1 5529 6078 -213 1175 74 6 25 chr3 195586753 195586916 -22450242 - THE1-int LTR MaLR -70 1510 1351 789 172 88 15 chr3 195586891 195587095 -22450063 + L1MA7 LINE L1 6071 6289 -2 * 493 262 8 0 chr3 195587512 195587638 -22449520 + L1ME3 LINE L1 6027 6153 -9 3596 88 2 8 chr3 195587746 195588233 -22448925 + MER41A LTR ERV1 71 554 0 308 274 146 58 chr3 195588338 195588612 -22448546 + HAL1 LINE L1 62 359 -2148 2026 254 103 39 chr3 195588693 195589559 -22447599 + HAL1 LINE L1 1544 2464 -43 195 332 63 106 chr3 195589780 195590111 -22447047 - L3 LINE CR1 -1197 380 64 226 354 39 0 chr3 195590399 195590526 -22446632 + L2 LINE L2 2544 2675 -639 21 36 0 0 chr3 195590981 195591009 -22446149 + AT_rich Low_complexity Low_complexity 1 28 0 1499 185 42 11 chr3 195591630 195591916 -22445242 + AluJb SINE Alu 1 295 -17 294 56 0 0 chr3 195592063 195592099 -22445059 - MLT2C2 LTR ERVL 0 464 429 2340 163 14 10 chr3 195592151 195592164 -22444994 - MLT2C2 LTR ERVL -44 420 409 950 16 23 8 chr3 195592164 195592293 -22444865 + (TAGA)n Simple_repeat Simple_repeat 3 133 0 2340 163 14 10 chr3 195592293 195592697 -22444461 - MLT2C2 LTR ERVL -55 409 1 18274 178 35 29 chr3 195593466 195598456 -22438702 + L1PA13 LINE L1 1 5048 -1766 249 83 0 0 chr3 195598456 195598492 -22438666 + (CA)n Simple_repeat Simple_repeat 1 36 0 18274 178 35 29 chr3 195598492 195600250 -22436908 + L1PA13 LINE L1 5048 6793 -21 350 95 16 0 chr3 195600579 195600642 -22436516 - L1MB7 LINE L1 -16 6168 6105 250 154 0 0 chr3 195600742 195600781 -22436377 - L1MB5 LINE L1 -115 6059 6021 636 211 15 78 chr3 195601275 195601479 -22435679 + MLT1K LTR MaLR 398 588 0 1733 137 47 78 chr3 195601629 195602016 -22435142 - THE1C LTR MaLR 0 375 1 21 36 0 0 chr3 195602954 195602982 -22434176 + AT_rich Low_complexity Low_complexity 1 28 0 1023 207 53 0 chr3 195603179 195603387 -22433771 + MER20 DNA MER1_type 1 219 0 1686 169 41 89 chr3 195603448 195603863 -22433295 - MLT1E LTR MaLR -2 591 197 211 226 19 0 chr3 195603878 195603931 -22433227 + L2 LINE L2 3256 3309 -4 213 315 37 9 chr3 195604129 195604237 -22432921 - MIR SINE MIR -57 205 95 1978 276 84 49 chr3 195604256 195605038 -22432120 + L1M4b LINE L1 5 814 -6045 895 139 76 32 chr3 195605606 195605764 -22431394 + AluSg/x SINE Alu 66 230 -82 279 0 0 0 chr3 195605864 195605895 -22431263 + (CA)n Simple_repeat Simple_repeat 2 32 0 219 389 0 0 chr3 195605943 195606015 -22431143 - L2 LINE L2 -2713 601 530 11718 143 36 13 chr3 195606726 195606891 -22430267 + L1M1 LINE L1 1020 1180 -6385 2153 119 140 11 chr3 195606891 195607270 -22429888 - MSTA LTR MaLR 0 428 1 11718 143 36 13 chr3 195607270 195609081 -22428077 + L1M1 LINE L1 1180 3043 -4522 882 9 0 0 chr3 195609202 195609307 -22427851 + L1P LINE L1 4329 4433 -1713 * 2470 26 18 4 chr3 195609290 195609688 -22427470 + L1PA3 LINE L1 5141 5552 -603 2018 34 0 0 chr3 195609688 195609953 -22427205 + L1PA3 LINE L1 5911 6176 0 405 252 25 23 chr3 195610389 195610521 -22426637 - MIR3 SINE MIR -7 201 69 1243 164 135 48 chr3 195611363 195611675 -22425483 + MER44D DNA MER2_type 1 609 0 1755 181 10 3 chr3 195611785 195612083 -22425075 + AluSx SINE Alu 1 300 -12 228 326 43 35 chr3 195612094 195612235 -22424923 - MIR SINE MIR 0 262 121 489 230 184 0 chr3 195612239 195612391 -22424767 + MIR SINE MIR 83 262 0 351 250 13 0 chr3 195612389 195612465 -22424693 - MIR SINE MIR -155 107 31 * 234 269 94 88 chr3 195613121 195613292 -22423866 - MIR SINE MIR -58 150 2 2227 113 7 0 chr3 195614696 195614997 -22422161 - AluSg SINE Alu -7 303 1 306 318 0 0 chr3 195615547 195615635 -22421523 - L1MC4 LINE L1 -1338 6704 6617 300 297 0 22 chr3 195615562 195615653 -22421505 + L1MC4 LINE L1 6614 6702 -1340 * 1911 176 162 19 chr3 195615664 195615841 -22421317 - MLT2B2 LTR ERVL -20 495 345 350 45 0 76 chr3 195615841 195615907 -22421251 + L1MA3 LINE L1 6245 6305 0 1911 176 162 19 chr3 195615907 195616162 -22420996 - MLT2B2 LTR ERVL -170 345 1 244 262 439 0 chr3 195616192 195616299 -22420859 - L3 LINE CR1 -375 1202 1049 2984 147 29 9 chr3 195616330 195616875 -22420283 - L1PB4 LINE L1 0 6156 5601 2019 148 23 18 chr3 195616875 195617258 -22419900 - L1MC1 LINE L1 0 6333 5948 5006 36 2 0 chr3 195617358 195617975 -22419183 + L1P LINE L1 4739 5356 -790 799 293 140 27 chr3 195618086 195618458 -22418700 - L3 LINE CR1 -610 967 554 191 406 88 23 chr3 195619250 195619511 -22417647 - L3 LINE CR1 -1265 312 35 187 308 39 0 chr3 195619537 195619589 -22417569 - L2 LINE L2 -2 3270 3217 214 351 48 88 chr3 195619900 195620151 -22417007 - L2 LINE L2 -498 2816 2576 1582 171 67 4 chr3 195620215 195620484 -22416674 + AluSx SINE Alu 1 286 -26 1077 272 93 46 chr3 195620771 195621246 -22415912 + MLT1J LTR MaLR 13 509 -2 2100 131 0 0 chr3 195621300 195621590 -22415568 + AluSq SINE Alu 1 290 -23 276 170 80 0 chr3 195621715 195621815 -22415343 + (TA)n Simple_repeat Simple_repeat 2 109 0 270 271 0 0 chr3 195621840 195621910 -22415248 + MIR SINE MIR 180 249 -13 2457 284 25 102 chr3 195623650 195625098 -22412060 + L1M3b LINE L1 1 1337 -4944 3102 191 46 10 chr3 195625107 195625892 -22411266 + L1M3b LINE L1 2957 3769 -2581 438 292 26 0 chr3 195625992 195626105 -22411053 + MIR SINE MIR 40 155 -107 2530 107 0 24 chr3 195626121 195626494 -22410664 - THE1B LTR MaLR 0 364 1 635 24 12 0 chr3 195626494 195626576 -22410582 - THE1B-int LTR MaLR 0 1580 1498 493 289 213 14 chr3 195627199 195627468 -22409690 - L2 LINE L2 -227 3086 2768 4368 42 24 0 chr3 195627586 195628127 -22409031 + L1PA5 LINE L1 5596 6149 -5 2181 125 7 0 chr3 195630059 195630363 -22406795 + AluSx SINE Alu 1 306 -6 23 0 0 0 chr3 195631166 195631189 -22405969 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr3 195631397 195631427 -22405731 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr3 195632168 195632197 -22404961 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr3 195632543 195632571 -22404587 + AT_rich Low_complexity Low_complexity 1 28 0 633 247 121 4 chr3 195632905 195633136 -22404022 + HAL1 LINE L1 2249 2506 -1 17287 158 18 6 chr3 195634760 195636599 -22400559 - L1P LINE L1 -1079 5067 3172 207 0 0 0 chr3 195636599 195636622 -22400536 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 17287 158 18 6 chr3 195636622 195637864 -22399294 - L1P LINE L1 -2974 3172 1947 278 268 72 0 chr3 195638169 195638266 -22398892 - MER113 DNA MER1_type? -417 104 1 30 59 0 0 chr3 195638280 195638331 -22398827 + AT_rich Low_complexity Low_complexity 1 51 0 2028 156 7 0 chr3 195638331 195638639 -22398519 - AluSx SINE Alu 0 312 3 278 302 47 12 chr3 195638694 195638780 -22398378 + MIR3 SINE MIR 111 199 -9 534 252 0 9 chr3 195638836 195638951 -22398207 - L2 LINE L2 -7 3306 3193 373 281 116 7 chr3 195638953 195639099 -22398059 - MIR SINE MIR -81 181 20 22 35 0 0 chr3 195639520 195639549 -22397609 + AT_rich Low_complexity Low_complexity 1 29 0 1881 169 0 10 chr3 195640152 195640465 -22396693 - AluJb SINE Alu -2 310 1 196 444 15 0 chr3 195640504 195640637 -22396521 - L2 LINE L2 -492 2822 2688 5832 130 35 62 chr3 195640765 195641983 -22395175 + MER52C LTR ERV1 95 1278 0 2664 121 55 0 chr3 195641983 195642488 -22394670 + L1M1 LINE L1 3040 3572 -3993 5975 91 11 3 chr3 195642488 195643347 -22393811 + L1MA1 LINE L1 5428 6292 -10 22 0 0 0 chr3 195643369 195643391 -22393767 + AT_rich Low_complexity Low_complexity 1 22 0 1834 138 38 7 chr3 195643583 195643872 -22393286 + AluJb SINE Alu 1 298 -14 21 0 0 0 chr3 195643873 195643894 -22393264 + AT_rich Low_complexity Low_complexity 1 21 0 305 333 0 40 chr3 195644060 195644186 -22392972 + MIR3 SINE MIR 46 166 -42 464 238 10 0 chr3 195644951 195645052 -22392106 + MER5A DNA MER1_type 9 110 -79 537 140 174 39 chr3 195645057 195645235 -22391923 + L1MA3 LINE L1 10 211 -7354 * 5587 127 16 27 chr3 195645233 195646484 -22390674 + L1MA3 LINE L1 6406 7641 -83 5415 148 30 14 chr3 195646498 195646854 -22390304 - L1PB1 LINE L1 -1 6150 5801 306 0 0 0 chr3 195646854 195646888 -22390270 + (TG)n Simple_repeat Simple_repeat 2 35 0 5415 148 30 14 chr3 195646888 195648395 -22388763 - L1PB1 LINE L1 -350 5801 4266 679 91 0 0 chr3 195648395 195648493 -22388665 + L1MA3 LINE L1 7626 7724 0 869 188 73 26 chr3 195648562 195648754 -22388404 + MSTD LTR MaLR 2 202 -194 3887 148 30 1 chr3 195648859 195650031 -22387127 - L1PA16 LINE L1 -271 5895 4702 5024 192 10 15 chr3 195650036 195651182 -22385976 + L1 LINE L1 3520 4659 -1487 208 281 16 16 chr3 195651531 195651595 -22385563 + MIR3 SINE MIR 137 200 -8 10713 163 18 11 chr3 195651983 195653856 -22383302 + LTR57-int LTR ERVL 1677 3563 -1780 516 175 55 2 chr3 195653957 195654077 -22383081 + MSTD LTR MaLR 287 388 -8 306 254 236 0 chr3 195654098 195654263 -22382895 + MIR SINE MIR 28 224 -5 3760 22 0 0 chr3 195654535 195654991 -22382167 - L1PA4 LINE L1 -1722 4424 3969 8052 25 0 2 chr3 195654991 195656750 -22380408 + L1PA4 LINE L1 4436 6193 0 795 152 0 14 chr3 195657138 195657276 -22379882 + U8 snRNA snRNA 1 136 0 21 36 0 0 chr3 195657523 195657551 -22379607 + AT_rich Low_complexity Low_complexity 1 28 0 247 141 56 56 chr3 195658790 195658861 -22378297 - L1PA16 LINE L1 -9 6157 6087 9920 155 18 8 chr3 195658963 195660624 -22376534 + LTR57-int LTR ERVL 3651 5328 -15 2402 134 48 8 chr3 195660630 195660803 -22376355 + LTR57 LTR ERVL 1 166 -245 390 21 0 0 chr3 195660803 195660850 -22376308 + (CA)n Simple_repeat Simple_repeat 1 47 0 2402 134 48 8 chr3 195660850 195661071 -22376087 + LTR57 LTR ERVL 166 411 0 603 273 180 16 chr3 195661306 195661690 -22375468 + L1ME4a LINE L1 5426 5872 -249 180 376 54 0 chr3 195661934 195662027 -22375131 - L2 LINE L2 -249 3023 2926 1019 233 28 0 chr3 195662202 195662416 -22374742 - MLT1A1 LTR MaLR -12 353 134 1428 201 92 9 chr3 195662416 195662744 -22374414 + MSTD LTR MaLR 1 355 -41 283 53 0 0 chr3 195662802 195662840 -22374318 + MSTD LTR MaLR 368 405 -23 * 600 191 33 13 chr3 195662820 195662972 -22374186 - MLT1A1 LTR MaLR -207 158 4 11452 117 8 57 chr3 195663163 195665645 -22371513 + L1P3 LINE L1 4 2459 -4002 517 73 0 0 chr3 195665650 195665718 -22371440 + Alu SINE Alu 1 68 -242 335 318 48 58 chr3 195667091 195667280 -22369878 - MIR3 SINE MIR -20 188 2 288 301 0 0 chr3 195667683 195667766 -22369392 + MIR SINE MIR 58 140 -122 210 231 0 0 chr3 195667859 195667898 -22369260 - L2 LINE L2 -2485 829 791 2634 30 3 0 chr3 195667950 195668253 -22368905 + AluY SINE Alu 1 304 -7 750 208 68 29 chr3 195668258 195668465 -22368693 - MIR SINE MIR -28 234 20 1517 279 115 24 chr3 195668588 195669403 -22367755 + L2 LINE L2 2404 3293 -20 319 309 26 46 chr3 195671463 195671571 -22365587 + L2 LINE L2 3165 3271 -42 2153 101 0 14 chr3 195671571 195671858 -22365300 + AluSg SINE Alu 28 310 0 319 309 26 46 chr3 195671858 195671901 -22365257 + L2 LINE L2 3271 3313 0 209 290 16 0 chr3 195672034 195672096 -22365062 - MIR SINE MIR 0 262 200 424 332 89 21 chr3 195672570 195672805 -22364353 + MIR SINE MIR 1 251 -11 2339 128 55 15 chr3 195673782 195674143 -22363015 + MLT2D LTR ERVL 1 381 -33 450 0 0 0 chr3 195674143 195674193 -22362965 + (CA)n Simple_repeat Simple_repeat 2 51 0 2339 128 55 15 chr3 195674193 195674229 -22362929 + MLT2D LTR ERVL 381 414 0 1173 190 117 4 chr3 195674298 195674572 -22362586 - MER58B DNA MER1_type 0 341 37 280 347 41 0 chr3 195675004 195675102 -22362056 + L2 LINE L2 3134 3235 -37 219 167 0 0 chr3 195675109 195675151 -22362007 + (TA)n Simple_repeat Simple_repeat 2 43 0 2014 126 3 22 chr3 195675258 195675576 -22361582 + AluSx SINE Alu 1 312 0 297 0 0 0 chr3 195676876 195676909 -22360249 + (TG)n Simple_repeat Simple_repeat 2 34 0 2676 131 65 2 chr3 195678071 195678551 -22358607 + L1MB3 LINE L1 5671 6180 -3 2632 78 10 123 chr3 195678792 195679172 -22357986 + MER9 LTR ERVK 1 314 -197 688 23 0 0 chr3 195679172 195679259 -22357899 + L1PA2 LINE L1 6068 6154 -1 2632 78 10 123 chr3 195679259 195679375 -22357783 + MER9 LTR ERVK 314 441 -70 421 153 0 0 chr3 195679520 195679592 -22357566 + L1MC2 LINE L1 6120 6191 -153 967 305 120 11 chr3 195681150 195681599 -22355559 - LTR33 LTR ERVL 0 521 24 694 277 48 28 chr3 195681619 195681868 -22355290 - MLT1K LTR MaLR -5 583 330 1278 106 11 0 chr3 195681877 195682056 -22355102 + AluSg/x SINE Alu 128 308 -4 2222 108 3 3 chr3 195683448 195683744 -22353414 - AluSc SINE Alu -13 296 1 313 241 60 30 chr3 195683760 195683893 -22353265 - L1MEc LINE L1 -5453 943 807 762 303 22 36 chr3 195684202 195684614 -22352544 - L1MEc LINE L1 -5955 441 36 22 0 0 0 chr3 195685307 195685329 -22351829 + AT_rich Low_complexity Low_complexity 1 22 0 454 312 156 59 chr3 195685851 195686510 -22350648 - L2 LINE L2 0 3313 2554 254 292 154 56 chr3 195686570 195686837 -22350321 + L2 LINE L2 2205 2497 -817 626 269 75 47 chr3 195687477 195687730 -22349428 + LTR33 LTR ERVL 11 270 -251 426 267 27 20 chr3 195687740 195687886 -22349272 + LTR33 LTR ERVL 371 517 -4 23 68 0 0 chr3 195689144 195689188 -22347970 + AT_rich Low_complexity Low_complexity 1 44 0 230 314 8 83 chr3 195689442 195689563 -22347595 - L2 LINE L2 0 3272 3161 1734 168 52 22 chr3 195689728 195690092 -22347066 - THE1C LTR MaLR 0 375 1 462 197 222 0 chr3 195690235 195690352 -22346806 - MER5A DNA MER1_type -10 179 37 513 298 105 21 chr3 195690443 195690681 -22346477 + MIR SINE MIR 5 262 0 2366 82 0 3 chr3 195691442 195691736 -22345422 + AluY SINE Alu 1 293 -18 638 126 0 0 chr3 195692147 195692234 -22344924 + L1P LINE L1 12 98 -6048 * 5334 113 23 39 chr3 195692232 195693112 -22344046 + L1P LINE L1 623 1488 -4658 4707 22 0 0 chr3 195693110 195693729 -22343429 - L1PA3 LINE L1 -708 5447 4829 * 6178 10 1 0 chr3 195693729 195694422 -22342736 + L1PA3 LINE L1 5458 6155 0 24803 58 1 5 chr3 195694427 195695318 -22341840 + L1P LINE L1 1469 2361 -3785 2417 87 0 0 chr3 195695318 195695617 -22341541 + AluY SINE Alu 1 299 -12 24803 58 1 5 chr3 195695617 195697959 -22339199 + L1P LINE L1 2361 4692 -1454 2316 94 0 3 chr3 195698085 195698382 -22338776 - AluSc SINE Alu -13 296 1 301 244 61 46 chr3 195698398 195698529 -22338629 - L1MEc LINE L1 -5453 943 811 961 313 20 34 chr3 195698806 195699250 -22337908 - L1MEc LINE L1 -5923 473 36 273 225 56 45 chr3 195700605 195700694 -22336464 + L2 LINE L2 3216 3305 -8 341 266 110 18 chr3 195701289 195701398 -22335760 - L3 LINE CR1 -367 1210 1092 1874 203 17 32 chr3 195701417 195701825 -22335333 + MLT2D LTR ERVL 1 402 -12 861 133 55 88 chr3 195702166 195702347 -22334811 + AluJo SINE Alu 1 175 -137 2638 133 30 0 chr3 195702448 195702853 -22334305 - THE1-int LTR MaLR -84 1496 1080 8058 168 38 0 chr3 195702853 195704463 -22332695 + L1PA13 LINE L1 3826 5521 -642 198 71 0 0 chr3 195704463 195704491 -22332667 + (TAAAA)n Simple_repeat Simple_repeat 1 28 0 8058 168 38 0 chr3 195704491 195705145 -22332013 + L1PA13 LINE L1 5521 6149 -14 355 259 41 74 chr3 195705149 195705392 -22331766 + HAL1 LINE L1 1327 1561 -946 605 193 31 75 chr3 195705961 195706189 -22330969 + L1ME LINE L1 5583 5800 -366 559 205 133 29 chr3 195706224 195706434 -22330724 + MER58 DNA MER1_type 33 264 -2156 793 155 18 0 chr3 195706436 195706588 -22330570 + L1PB1 LINE L1 5710 5868 -283 2221 91 0 39 chr3 195706942 195707251 -22329907 - AluSq SINE Alu -16 297 1 242 321 48 0 chr3 195707631 195707715 -22329443 + Charlie7 DNA MER1_type 4 91 -2521 49 18 0 0 chr3 195708068 195708124 -22329034 + AT_rich Low_complexity Low_complexity 1 56 0 1857 129 25 3 chr3 195708192 195708518 -22328640 - L1MB3 LINE L1 -1 6182 5850 313 279 60 78 chr3 195708917 195709200 -22327958 + HAL1 LINE L1 765 1042 -1465 816 258 54 24 chr3 195709255 195709550 -22327608 + HAL1 LINE L1 1427 1730 -777 3536 152 97 2 chr3 195709552 195710170 -22326988 + Tigger1 DNA MER2_type 1 677 -1741 939 173 12 12 chr3 195710170 195710338 -22326820 + MER66B LTR ERV1 1 168 -318 1601 213 3 7 chr3 195710341 195710646 -22326512 + AluSx SINE Alu 3 306 -6 374 319 57 70 chr3 195710646 195710960 -22326198 + L2 LINE L2 2911 3220 -93 224 341 77 0 chr3 195710987 195711078 -22326080 + L2 LINE L2 3199 3296 -17 346 279 124 39 chr3 195711452 195711735 -22325423 - L1M4 LINE L1 -1353 4793 4487 193 224 0 112 chr3 195711811 195711909 -22325249 - L3 LINE CR1 -81 1496 1410 197 325 0 48 chr3 195712211 195712294 -22324864 + L2 LINE L2 3235 3313 0 23 54 0 0 chr3 195712462 195712499 -22324659 + AT_rich Low_complexity Low_complexity 1 37 0 216 0 0 0 chr3 195712557 195712581 -22324577 + (TG)n Simple_repeat Simple_repeat 2 25 0 234 156 0 0 chr3 195712873 195712918 -22324240 + T-rich Low_complexity Low_complexity 1 45 0 725 137 0 38 chr3 195712923 195713011 -22324147 + Tigger1 DNA MER2_type 590 673 -1745 2362 189 26 37 chr3 195713011 195713174 -22323984 + MER66B LTR ERV1 1 164 -322 2026 148 3 0 chr3 195713174 195713477 -22323681 + AluSx SINE Alu 1 304 -8 2362 189 26 37 chr3 195713477 195713804 -22323354 + MER66B LTR ERV1 164 486 0 725 137 0 38 chr3 195713804 195713846 -22323312 + Tigger1 DNA MER2_type 673 715 -1703 749 144 0 0 chr3 195713856 195713967 -22323191 - AluSg/x SINE Alu -63 247 137 9201 124 29 11 chr3 195713967 195714556 -22322602 + Tigger1 DNA MER2_type 723 1300 -1118 2029 144 0 10 chr3 195714556 195714855 -22322303 + AluSx SINE Alu 1 296 -16 9201 124 29 11 chr3 195714855 195715723 -22321435 + Tigger1 DNA MER2_type 1300 2206 -212 279 0 0 0 chr3 195715939 195715970 -22321188 + (TC)n Simple_repeat Simple_repeat 2 32 0 * 333 0 0 0 chr3 195715969 195716006 -22321152 + (TG)n Simple_repeat Simple_repeat 2 38 0 1107 329 68 48 chr3 195716075 195716403 -22320755 + L2 LINE L2 1866 2186 -1128 1550 145 97 51 chr3 195716403 195716776 -22320382 - MLT1B LTR MaLR 0 390 1 1107 329 68 48 chr3 195716776 195717265 -22319893 + L2 LINE L2 2186 2700 -614 444 175 129 105 chr3 195717512 195717683 -22319475 - L1ME2 LINE L1 -19 6145 5971 2152 199 99 113 chr3 195717747 195718524 -22318634 + LTR41 LTR ERVL 1 766 -7 372 198 39 26 chr3 195718535 195718724 -22318434 - L1MD2 LINE L1 -421 5743 5657 * 2905 279 30 105 chr3 195718708 195718889 -22318269 - L1MC3 LINE L1 -8 7777 7584 2326 93 3 0 chr3 195718889 195719189 -22317969 - AluSg SINE Alu -9 301 1 2905 279 30 105 chr3 195719189 195719591 -22317567 - L1MC3 LINE L1 -201 7584 7154 347 268 12 0 chr3 195719591 195719673 -22317485 - MLT1F1 LTR MaLR -442 125 43 2905 279 30 105 chr3 195719673 195720531 -22316627 - L1MC3 LINE L1 -631 7154 6368 428 195 12 0 chr3 195720531 195720613 -22316545 - L1MD2 LINE L1 -474 5690 5608 726 176 8 0 chr3 195720621 195720740 -22316418 + FLAM_A SINE Alu 6 125 -17 302 265 0 0 chr3 195720751 195720819 -22316339 - L1MD2 LINE L1 -547 5617 5550 581 382 57 36 chr3 195720831 195721044 -22316114 + L2 LINE L2 2711 2918 -395 1893 176 0 0 chr3 195721044 195721345 -22315813 + AluJb SINE Alu 3 303 -9 581 382 57 36 chr3 195721345 195721628 -22315530 + L2 LINE L2 2918 3217 -96 380 294 118 24 chr3 195722099 195722395 -22314763 - L1MD2 LINE L1 -1336 4810 4487 213 283 0 0 chr3 195722516 195722569 -22314589 - L3 LINE CR1 -115 1462 1410 213 317 0 37 chr3 195722866 195722948 -22314210 + L2 LINE L2 3235 3313 0 770 65 0 0 chr3 195722994 195723101 -22314057 + L1PA14 LINE L1 6052 6158 -3 30 27 0 0 chr3 195723101 195723138 -22314020 + AT_rich Low_complexity Low_complexity 1 37 0 552 306 55 37 chr3 195723150 195723421 -22313737 - L1ME LINE L1 -566 5555 5280 262 115 39 0 chr3 195724499 195724551 -22312607 + CT-rich Low_complexity Low_complexity 2 55 0 21 0 0 0 chr3 195724931 195724952 -22312206 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr3 195725526 195725563 -22311595 + AT_rich Low_complexity Low_complexity 1 37 0 236 305 132 28 chr3 195725901 195726219 -22310939 + L2 LINE L2 2623 2973 -341 226 346 20 59 chr3 195726427 195726580 -22310578 - L2 LINE L2 0 3272 3126 222 150 0 0 chr3 195728582 195728622 -22308536 + (GA)n Simple_repeat Simple_repeat 1 40 0 369 379 69 25 chr3 195728801 195729163 -22307995 - L3b LINE CR1 -24 1559 1182 182 231 0 0 chr3 195729807 195729846 -22307312 + MIR SINE MIR 111 149 -59 701 268 0 74 chr3 195729863 195729904 -22307254 - MIR SINE MIR -9 253 211 2318 97 6 0 chr3 195729904 195730215 -22306943 - AluSq SINE Alu 0 313 1 701 268 0 74 chr3 195730215 195730404 -22306754 - MIR SINE MIR -51 211 40 466 259 14 35 chr3 195730418 195730561 -22306597 + L1ME LINE L1 5487 5626 -495 594 301 97 9 chr3 195730591 195730807 -22306351 - MIR SINE MIR -22 240 6 24 77 0 0 chr3 195731163 195731215 -22305943 + AT_rich Low_complexity Low_complexity 1 52 0 233 291 165 21 chr3 195731558 195731693 -22305465 + MIR SINE MIR 12 163 -45 1321 153 71 67 chr3 195731822 195732104 -22305054 + AluJo SINE Alu 7 289 -23 21 0 0 0 chr3 195732322 195732343 -22304815 + AT_rich Low_complexity Low_complexity 1 21 0 189 343 139 15 chr3 195733860 195733997 -22303161 + MIR SINE MIR 70 223 -39 349 292 133 78 chr3 195735090 195735487 -22301671 - MLT1K LTR MaLR -23 565 147 193 367 75 0 chr3 195735838 195735958 -22301200 - L2 LINE L2 -571 2743 2615 505 329 174 19 chr3 195736047 195736421 -22300737 + MLT1K LTR MaLR 151 582 -6 436 357 60 17 chr3 195736440 195736675 -22300483 - MIR SINE MIR -12 250 6 187 355 43 0 chr3 195736709 195736802 -22300356 - L2 LINE L2 -697 2617 2521 204 292 0 0 chr3 195736939 195736987 -22300171 - L2 LINE L2 -969 2345 2298 1515 177 0 64 chr3 195736993 195737320 -22299838 - AluJo SINE Alu -3 309 4 30 0 0 0 chr3 195737370 195737400 -22299758 + AT_rich Low_complexity Low_complexity 1 30 0 2936 117 60 8 chr3 195737653 195738139 -22299019 + MER9 LTR ERVK 1 511 0 280 339 89 16 chr3 195738300 195738424 -22298734 + MIR SINE MIR 5 137 -125 201 74 0 0 chr3 195738426 195738453 -22298705 + (A)n Simple_repeat Simple_repeat 1 27 0 258 304 32 24 chr3 195738480 195738605 -22298553 + MIR SINE MIR 137 262 0 * 374 338 96 7 chr3 195738599 195738735 -22298423 + L2 LINE L2 3121 3268 -4 1268 106 11 0 chr3 195738785 195738964 -22298194 + AluSg/x SINE Alu 128 308 -4 273 225 56 45 chr3 195741142 195741231 -22295927 + L2 LINE L2 3216 3305 -8 321 224 0 0 chr3 195741827 195741894 -22295264 - L3 LINE CR1 -367 1210 1144 1594 225 20 37 chr3 195741958 195742363 -22294795 + MLT2D LTR ERVL 5 402 -12 1571 146 33 57 chr3 195742704 195743005 -22294153 + AluJo SINE Alu 1 294 -18 2642 123 16 0 chr3 195743211 195743594 -22293564 + MER1A DNA MER1_type 141 529 0 375 23 0 0 chr3 195743861 195743905 -22293253 + (TG)n Simple_repeat Simple_repeat 2 45 0 289 314 102 8 chr3 195745037 195745155 -22292003 - MIR3 SINE MIR -2 206 78 2486 83 3 0 chr3 195745215 195745527 -22291631 - AluSp SINE Alu 0 313 1 1379 242 97 46 chr3 195745673 195746047 -22291111 + L2 LINE L2 2662 3079 -234 2207 70 28 3 chr3 195746047 195746377 -22290781 + AluY SINE Alu 1 337 0 1379 242 97 46 chr3 195746377 195746625 -22290533 + L2 LINE L2 3079 3313 0 213 39 0 0 chr3 195747036 195747062 -22290096 + (TG)n Simple_repeat Simple_repeat 2 27 0 1705 181 78 118 chr3 195748085 195748443 -22288715 - MLT2B1 LTR ERVL 0 520 188 1681 147 55 0 chr3 195748443 195748716 -22288442 - AluJb SINE Alu -24 288 1 1705 181 78 118 chr3 195748716 195748893 -22288265 - MLT2B1 LTR ERVL -332 188 6 1613 170 73 20 chr3 195748893 195749235 -22287923 + MER46B DNA MER2_type 1 235 -1 25 0 0 0 chr3 195749240 195749265 -22287893 + AT_rich Low_complexity Low_complexity 1 25 0 256 176 73 29 chr3 195749489 195749557 -22287601 - MLT1K LTR MaLR 0 588 518 5989 159 51 9 chr3 195749588 195751148 -22286010 + L1MC1 LINE L1 4697 6328 -5 228 326 179 49 chr3 195751729 195752036 -22285122 + L2 LINE L2 2890 3236 -36 1925 109 11 4 chr3 195753093 195753391 -22283767 - AluSx SINE Alu 0 305 6 405 230 48 24 chr3 195753778 195753904 -22283254 + MIR SINE MIR 45 173 -89 23 33 0 0 chr3 195756874 195756904 -22280254 + AT_rich Low_complexity Low_complexity 1 30 0 2352 73 3 19 chr3 195757790 195758103 -22279055 - AluY SINE Alu -3 308 1 209 315 130 0 chr3 195759511 195759603 -22277555 + L2 LINE L2 2405 2508 -806 27 73 0 0 chr3 195760879 195760934 -22276224 + AT_rich Low_complexity Low_complexity 1 55 0 886 196 40 67 chr3 195761612 195761837 -22275321 + MER20 DNA MER1_type 1 219 0 23 0 0 0 chr3 195763564 195763587 -22273571 + AT_rich Low_complexity Low_complexity 1 23 0 950 148 0 0 chr3 195764806 195764955 -22272203 - L1PB4 LINE L1 -12 6144 5996 915 208 106 0 chr3 195764956 195765008 -22272150 + L1P5 LINE L1 5070 5115 -1041 1312 186 123 4 chr3 195765008 195765277 -22271881 + AluJo SINE Alu 1 301 -11 915 208 106 0 chr3 195765277 195765581 -22271577 + L1P5 LINE L1 5115 5473 -683 246 111 0 0 chr3 195765635 195765671 -22271487 + MADE1 DNA Mariner 1 36 -44 260 269 234 0 chr3 195766017 195766158 -22271000 - MIR SINE MIR -16 246 73 6371 120 107 7 chr3 195769615 195770414 -22266744 + Tigger3b DNA MER2_type 6 949 -2079 185 65 32 0 chr3 195770414 195770445 -22266713 + (CTCA)n Simple_repeat Simple_repeat 1 32 0 6371 120 107 7 chr3 195770445 195770760 -22266398 + Tigger3b DNA MER2_type 949 1231 0 3633 40 5 0 chr3 195770931 195771375 -22265783 - L1PA4 LINE L1 0 6155 5710 28 0 0 0 chr3 195772931 195772959 -22264199 + AT_rich Low_complexity Low_complexity 1 28 0 210 143 0 0 chr3 195773145 195773180 -22263978 + (TA)n Simple_repeat Simple_repeat 2 36 0 4382 155 49 8 chr3 195773296 195774096 -22263062 - L1PB4 LINE L1 -2 6856 6024 710 110 42 8 chr3 195774096 195774214 -22262944 - L1PA15 LINE L1 0 6165 6044 11409 208 49 27 chr3 195774214 195775597 -22261561 - L1PB4 LINE L1 -1253 5595 4243 336 24 0 0 chr3 195775597 195775638 -22261520 + (TTA)n Simple_repeat Simple_repeat 3 43 0 11409 208 49 27 chr3 195775638 195779091 -22258067 - L1PB4 LINE L1 -2605 4243 620 228 412 23 0 chr3 195779532 195779663 -22257495 - L1M2 LINE L1 -6051 798 665 209 195 49 0 chr3 195779925 195779966 -22257192 + MIR3 SINE MIR 114 156 -52 2263 173 21 52 chr3 195780330 195780736 -22256422 + MLT1C LTR MaLR 2 392 -75 2349 79 10 0 chr3 195780736 195781027 -22256131 - AluY SINE Alu -17 294 1 2263 173 21 52 chr3 195781027 195781099 -22256059 + MLT1C LTR MaLR 392 465 -2 869 215 61 23 chr3 195781101 195781315 -22255843 - MER58A DNA MER1_type -1 223 2 634 200 44 172 chr3 195781588 195782038 -22255120 - LTR37B LTR ERV1 0 468 35 667 275 62 0 chr3 195782458 195782651 -22254507 - MIR SINE MIR 0 262 58 1714 209 34 28 chr3 195784360 195784748 -22252410 - LTR40b LTR ERVL -10 452 63 314 313 77 48 chr3 195786064 195786272 -22250886 + HAL1 LINE L1 1107 1320 -1187 287 341 49 4 chr3 195786306 195786532 -22250626 + L1PA12 LINE L1 1834 2069 -5512 225 0 0 0 chr3 195786659 195786684 -22250474 + (CACCC)n Simple_repeat Simple_repeat 5 29 0 4390 159 19 3 chr3 195786728 195787471 -22249687 + L1PA12 LINE L1 1697 2451 -5130 1201 185 23 0 chr3 195788064 195788280 -22248878 + L1ME1 LINE L1 5583 5803 -363 861 203 144 5 chr3 195788293 195788515 -22248643 + MER58B DNA MER1_type 12 264 -77 2621 128 5 16 chr3 195788533 195788956 -22248202 + L1PB2 LINE L1 5731 6148 -3 260 243 27 14 chr3 195788981 195789055 -22248103 + MER58B DNA MER1_type 267 341 0 636 211 43 34 chr3 195789055 195789267 -22247891 + L1ME1 LINE L1 5809 6023 -161 690 160 60 7 chr3 195789267 195789417 -22247741 + L1MA10 LINE L1 6175 6332 -2 1983 268 110 38 chr3 195789479 195790787 -22246371 + L1 LINE L1 2967 4368 -1778 253 288 59 17 chr3 195790845 195790963 -22246195 + L1 LINE L1 4897 5019 -1127 21 0 0 0 chr3 195791718 195791739 -22245419 + AT_rich Low_complexity Low_complexity 1 21 0 2510 57 0 0 chr3 195792133 195792429 -22244729 - AluY SINE Alu -15 296 1 1786 166 39 21 chr3 195793337 195793675 -22243483 + MER2 DNA MER2_type 1 344 0 622 244 148 26 chr3 195793811 195794040 -22243118 + MIR SINE MIR 6 262 0 209 256 0 0 chr3 195794248 195794291 -22242867 + CT-rich Low_complexity Low_complexity 3 45 0 194 310 199 37 chr3 195794792 195795008 -22242150 - MIR SINE MIR 0 262 12 368 324 182 0 chr3 195795544 195795714 -22241444 + MIR SINE MIR 50 250 -12 1531 221 86 20 chr3 195797567 195797974 -22239184 + MER63B DNA MER1_type 1 434 -2 2187 116 0 0 chr3 195799376 195799685 -22237473 + AluSx SINE Alu 1 309 0 1742 82 82 0 chr3 195799733 195799964 -22237194 + AluSq SINE Alu 1 250 -63 8471 98 1 4 chr3 195800074 195801308 -22235850 - L1P LINE L1 -1980 4166 2937 6978 48 9 12 chr3 195801308 195802773 -22234385 + L1PA5 LINE L1 4692 6154 0 222 205 0 26 chr3 195802778 195802817 -22234341 + T-rich Low_complexity Low_complexity 2 39 0 1153 147 67 14 chr3 195803328 195803613 -22233545 - AluY SINE Alu -1 300 1 906 305 76 39 chr3 195804854 195805259 -22231899 + L1M4 LINE L1 2884 3273 -2873 2325 112 0 0 chr3 195805259 195805555 -22231603 + AluSx SINE Alu 3 298 -14 906 305 76 39 chr3 195805555 195805852 -22231306 + L1M4 LINE L1 3273 3558 -2588 1924 151 39 24 chr3 195805852 195806183 -22230975 + MER1B DNA MER1_type 2 337 0 906 305 76 39 chr3 195806183 195806905 -22230253 + L1M4 LINE L1 3558 4361 -1785 3418 203 43 84 chr3 195807158 195808663 -22228495 + L1MCb LINE L1 1 1412 -4851 1206 181 42 0 chr3 195808640 195808899 -22228259 + L1MC3 LINE L1 7246 7515 -688 * 257 310 0 0 chr3 195808899 195808986 -22228172 + MLT1F1 LTR MaLR 35 121 -446 1004 188 89 0 chr3 195808987 195809200 -22227958 + L1MC3 LINE L1 7200 7431 -354 535 99 12 0 chr3 195809314 195809395 -22227763 - AluY SINE Alu -229 82 1 2119 116 0 0 chr3 195809409 195809694 -22227464 - AluSx SINE Alu -27 285 1 430 171 122 0 chr3 195809708 195809790 -22227368 - MER92B LTR ERV1 -542 94 3 278 294 87 40 chr3 195809864 195809990 -22227168 - MIR SINE MIR -82 180 49 377 387 18 30 chr3 195810166 195810334 -22226824 + MIR SINE MIR 20 185 -77 513 230 95 10 chr3 195811260 195811434 -22225724 - MIR SINE MIR -63 145 16 367 324 63 21 chr3 195811463 195811605 -22225553 + MER5A DNA MER1_type 40 187 -2 1299 274 76 30 chr3 195812503 195812974 -22224184 + MLT1J LTR MaLR 4 496 -15 2997 132 28 4 chr3 195813140 195813610 -22223548 - THE1-int LTR MaLR -30 1550 1070 * 6247 92 1 0 chr3 195813601 195814459 -22222699 + L1P LINE L1 3826 4684 -1462 233 292 226 0 chr3 195814596 195814733 -22222425 - HAL1 LINE L1 -607 1900 1733 678 176 137 0 chr3 195814736 195814867 -22222291 - Tigger1 DNA MER2_type -1 2417 2269 2187 116 0 0 chr3 195816135 195816444 -22220714 + AluSx SINE Alu 1 309 0 2037 96 68 0 chr3 195816492 195816772 -22220386 + AluSq SINE Alu 1 299 -14 422 188 188 0 chr3 195817684 195817785 -22219373 + MER103 DNA DNA 1 120 -46 1891 140 3 7 chr3 195817809 195818101 -22219057 - AluSx SINE Alu -9 303 13 2378 88 51 23 chr3 195818841 195819195 -22217963 + THE1B LTR MaLR 1 364 0 448 245 191 37 chr3 195821083 195821271 -22215887 + MIR SINE MIR 8 224 -38 2133 141 0 0 chr3 195821583 195821888 -22215270 + AluSx SINE Alu 5 309 -3 2247 92 0 3 chr3 195821890 195822173 -22214985 + AluY SINE Alu 1 282 -29 24 32 0 0 chr3 195824450 195824481 -22212677 + AT_rich Low_complexity Low_complexity 1 31 0 233 288 17 0 chr3 195825181 195825240 -22211918 + L2 LINE L2 3211 3270 -2 22 70 0 0 chr3 195825613 195825656 -22211502 + AT_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr3 195825975 195825999 -22211159 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr3 195826620 195826642 -22210516 + AT_rich Low_complexity Low_complexity 1 22 0 2040 95 11 0 chr3 195826995 195827259 -22209899 + AluSx SINE Alu 29 295 -17 24 0 0 0 chr3 195827600 195827624 -22209534 + AT_rich Low_complexity Low_complexity 1 24 0 4682 174 26 34 chr3 195827971 195828299 -22208859 + L1 LINE L1 4235 4564 -1582 1989 185 29 27 chr3 195828299 195828743 -22208415 + MER65A LTR ERV1 1 445 0 4682 174 26 34 chr3 195828743 195828934 -22208224 + L1 LINE L1 4564 4755 -1391 1186 201 99 34 chr3 195828934 195829257 -22207901 + MER2 DNA MER2_type 1 344 0 4682 174 26 34 chr3 195829257 195829755 -22207403 + L1 LINE L1 4755 5245 -901 252 86 0 0 chr3 195829834 195829869 -22207289 + (A)n Simple_repeat Simple_repeat 1 35 0 25 51 0 0 chr3 195830286 195830325 -22206833 + AT_rich Low_complexity Low_complexity 1 39 0 219 167 0 0 chr3 195830747 195830789 -22206369 + GA-rich Low_complexity Low_complexity 1 42 0 3443 104 8 68 chr3 195831749 195832337 -22204821 + MER41A LTR ERV1 2 554 0 1981 136 86 29 chr3 195832682 195833100 -22204058 + LTR56 LTR ERV1 4 445 0 2096 93 24 17 chr3 195833167 195833458 -22203700 + AluSq SINE Alu 1 293 -20 480 81 0 0 chr3 195833523 195833585 -22203573 + Alu SINE Alu 2 63 -255 607 127 19 127 chr3 195834246 195834404 -22202754 - FLAM_C SINE Alu -2 141 1 363 263 247 0 chr3 195835879 195836069 -22201089 + MER102a DNA MER1_type 83 319 -11 334 268 31 31 chr3 195836083 195836180 -22200978 - MIR3 SINE MIR -13 195 99 418 283 85 24 chr3 195836284 195836613 -22200545 - L1MC5 LINE L1 -44 7917 7569 582 148 28 26 chr3 195836979 195837111 -22200047 + L1M1 LINE L1 3 569 -6920 227 271 68 43 chr3 195837827 195838077 -22199081 - L1ME4a LINE L1 -69 6052 5795 348 175 12 25 chr3 195838131 195838211 -22198947 + HsTC2 DNA Tc2 1 79 -1819 334 317 59 0 chr3 195838421 195838522 -22198636 + L2 LINE L2 3162 3268 -4 762 246 98 10 chr3 195838887 195839184 -22197974 + L1ME4a LINE L1 5573 5895 -226 24 77 0 0 chr3 195840038 195840090 -22197068 + AT_rich Low_complexity Low_complexity 1 52 0 2426 84 7 0 chr3 195840409 195840718 -22196440 + AluSp SINE Alu 3 313 0 429 276 207 0 chr3 195841135 195841280 -22195878 + MIR3 SINE MIR 30 204 -4 207 209 0 0 chr3 195841987 195842030 -22195128 + (TA)n Simple_repeat Simple_repeat 1 43 0 437 270 48 53 chr3 195844473 195844662 -22192496 + MIR SINE MIR 8 195 -67 865 217 33 19 chr3 195845069 195845281 -22191877 - MER99 DNA DNA -2 826 612 376 310 122 11 chr3 195846512 195846799 -22190359 + Charlie7 DNA MER1_type 5 323 -2289 247 197 66 0 chr3 195846824 195846885 -22190273 + Charlie7 DNA MER1_type 1473 1537 -1075 651 99 0 0 chr3 195846893 195846984 -22190174 + AluSc SINE Alu 206 296 -13 523 277 51 0 chr3 195846996 195847173 -22189985 + Charlie7 DNA MER1_type 1547 1732 -880 272 209 42 116 chr3 195847178 195847437 -22189721 + Charlie7 DNA MER1_type 2354 2593 -19 228 67 0 0 chr3 195847812 195847842 -22189316 + (TG)n Simple_repeat Simple_repeat 2 31 0 282 264 31 54 chr3 195847885 195848014 -22189144 - MLT1L LTR MaLR -332 283 158 295 186 80 0 chr3 195848515 195848628 -22188530 - AluSc SINE Alu -176 123 2 800 233 12 0 chr3 195848834 195848997 -22188161 - MER58B DNA MER1_type -5 336 172 22 0 0 0 chr3 195848997 195849019 -22188139 + AT_rich Low_complexity Low_complexity 1 22 0 393 337 40 40 chr3 195849092 195849392 -22187766 + L1MC/D LINE L1 5257 5556 -686 410 292 146 10 chr3 195849448 195849736 -22187422 + L1ME4a LINE L1 5502 5828 -293 31 82 0 0 chr3 195849737 195849810 -22187348 + AT_rich Low_complexity Low_complexity 1 73 0 27 0 0 0 chr3 195849949 195849976 -22187182 + AT_rich Low_complexity Low_complexity 1 27 0 348 325 74 33 chr3 195850321 195850564 -22186594 - MIR SINE MIR -8 254 2 2325 81 10 0 chr3 195850634 195850930 -22186228 + AluY SINE Alu 1 299 -12 23 0 0 0 chr3 195852741 195852764 -22184394 + AT_rich Low_complexity Low_complexity 1 23 0 464 326 28 17 chr3 195854259 195854437 -22182721 + MIR SINE MIR 5 184 -78 213 307 40 13 chr3 195854837 195854912 -22182246 + L2 LINE L2 3181 3257 -15 26 82 0 0 chr3 195854963 195855024 -22182134 + AT_rich Low_complexity Low_complexity 1 61 0 23 54 0 0 chr3 195855059 195855096 -22182062 + AT_rich Low_complexity Low_complexity 1 37 0 2055 150 126 11 chr3 195858742 195859123 -22178035 + MSTA LTR MaLR 4 428 0 537 263 34 29 chr3 195859557 195859766 -22177392 - L1MC5 LINE L1 -48 7913 7704 268 210 12 12 chr3 195859828 195859909 -22177249 - L1MC5 LINE L1 -255 7706 7626 660 148 37 52 chr3 195860040 195860175 -22176983 + FLAM_C SINE Alu 1 133 0 856 213 35 20 chr3 195860424 195860621 -22176537 - MLT1A2 LTR MaLR -4 370 171 320 298 80 86 chr3 195860841 195861327 -22175831 - L1M2 LINE L1 -5717 1132 650 1079 135 35 20 chr3 195861504 195861704 -22175454 - L1PA16 LINE L1 -1 6165 5963 24 0 0 29 chr3 195863605 195863620 -22173538 + AT_rich Low_complexity Low_complexity 1 15 -19 1830 183 3 3 chr3 195863620 195863937 -22173221 - 7SLRNA srpRNA srpRNA -3 317 1 24 0 0 29 chr3 195863937 195863956 -22173202 + AT_rich Low_complexity Low_complexity 15 34 0 289 301 39 71 chr3 195864533 195864690 -22172468 + MIR SINE MIR 32 182 -67 372 293 108 32 chr3 195864696 195864853 -22172305 - MIR SINE MIR 0 262 94 1612 141 32 35 chr3 195865120 195865460 -22171698 + L1MA8 LINE L1 5943 6281 -10 207 0 0 0 chr3 195865489 195865512 -22171646 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 258 32 0 0 chr3 195865511 195865542 -22171616 + (CA)n Simple_repeat Simple_repeat 1 31 0 870 266 76 60 chr3 195865603 195865817 -22171341 - L1MC4a LINE L1 -297 5824 5615 1407 184 100 16 chr3 195865817 195866138 -22171020 + MER7A DNA MER2_type 1 346 0 870 266 76 60 chr3 195866138 195866232 -22170926 - L1MC4a LINE L1 -506 5615 5524 1915 75 4 0 chr3 195866232 195866485 -22170673 + L1PA14 LINE L1 5905 6158 -3 870 266 76 60 chr3 195866485 195867060 -22170098 - L1MC4a LINE L1 -597 5524 5018 212 313 109 7 chr3 195867918 195868065 -22169093 + MIR SINE MIR 101 262 0 1155 113 5 21 chr3 195868715 195868909 -22168249 + AluY SINE Alu 120 310 -1 355 250 26 26 chr3 195868992 195869108 -22168050 - LTR50 LTR ERVL -209 586 471 1925 115 0 7 chr3 195869152 195869422 -22167736 + AluSx SINE Alu 6 273 -39 661 180 19 15 chr3 195869422 195869689 -22167469 + GA-rich Low_complexity Low_complexity 1 268 0 855 206 94 9 chr3 195869754 195869977 -22167181 - LTR50 LTR ERVL -553 242 1 488 127 85 0 chr3 195870169 195870287 -22166871 - Charlie5 DNA MER1_type -57 2555 2428 23 68 0 0 chr3 195870533 195870577 -22166581 + AT_rich Low_complexity Low_complexity 1 44 0 189 0 0 0 chr3 195870972 195870993 -22166165 + (A)n Simple_repeat Simple_repeat 1 21 0 1997 114 3 10 chr3 195874063 195874379 -22162779 + AluSg1 SINE Alu 1 314 0 439 153 0 0 chr3 195874770 195874842 -22162316 + AluS SINE Alu 230 301 -11 2112 117 3 0 chr3 195875920 195876202 -22160956 + AluSc SINE Alu 1 283 -26 602 162 48 0 chr3 195876300 195876405 -22160753 - L2 LINE L2 -7 3306 3197 221 276 66 13 chr3 195877164 195877240 -22159918 + L3b LINE CR1 1291 1370 -213 249 349 7 0 chr3 195877767 195877916 -22159242 + (TA)n Simple_repeat Simple_repeat 1 150 0 263 211 28 0 chr3 195879106 195879177 -22157981 - L1ME4a LINE L1 -82 6039 5967 343 275 46 0 chr3 195879294 195879425 -22157733 + L1MC4a LINE L1 5765 5901 -1907 1274 189 42 83 chr3 195879581 195879967 -22157191 + MLT1A2 LTR MaLR 5 374 0 303 226 193 22 chr3 195880011 195880192 -22156966 - L1ME4a LINE L1 -15 6106 5895 1529 179 140 11 chr3 195880300 195880651 -22156507 + MSTD LTR MaLR 1 396 0 2301 147 47 100 chr3 195880898 195881428 -22155730 - MER92B LTR ERV1 0 636 135 1021 249 99 23 chr3 195881660 195882094 -22155064 - HAL1b LINE L1 -301 1047 581 687 46 0 0 chr3 195882099 195882186 -22154972 + (TA)n Simple_repeat Simple_repeat 1 87 0 475 254 0 15 chr3 195882188 195882318 -22154840 - L1PA5 LINE L1 -31 6123 5996 181 282 0 26 chr3 195882319 195882358 -22154800 + (TA)n Simple_repeat Simple_repeat 1 38 0 1851 154 7 3 chr3 195883140 195883432 -22153726 + AluSx SINE Alu 1 293 -19 287 205 90 0 chr3 195883549 195883627 -22153531 - MER103 DNA DNA -69 97 13 184 264 149 11 chr3 195883745 195883832 -22153326 + MER5A DNA MER1_type 35 133 -56 393 278 69 43 chr3 195884387 195884808 -22152350 + L1P LINE L1 2147 2578 -3568 243 274 167 27 chr3 195985657 195985850 -22051308 + MIR SINE MIR 3 225 -37 2120 128 0 0 chr3 195987803 195988101 -22049057 - AluSx SINE Alu -8 304 7 235 359 0 0 chr3 195988428 195988506 -22048652 - L1ME4a LINE L1 -340 5781 5704 1764 149 7 10 chr3 195989015 195989341 -22047817 + AluSx SINE Alu 1 325 0 23 0 0 0 chr3 195989360 195989383 -22047775 + AT_rich Low_complexity Low_complexity 1 23 0 2260 93 0 3 chr3 195989383 195989683 -22047475 - AluSx SINE Alu -13 299 1 1981 136 0 0 chr3 195989685 195989971 -22047187 - AluSq SINE Alu -16 297 12 550 309 150 6 chr3 195992614 195992980 -22044178 + L1MB8 LINE L1 5576 5994 -184 284 360 0 11 chr3 195995047 195995222 -22041936 + (CCCCAG)n Simple_repeat Simple_repeat 1 173 0 226 365 3 12 chr3 195995638 195995863 -22041295 + G-rich Low_complexity Low_complexity 1 223 0 1609 114 4 4 chr3 195996737 195996974 -22040184 - AluSq SINE Alu -76 237 1 24 0 0 0 chr3 195997532 195997556 -22039602 + GC_rich Low_complexity Low_complexity 1 24 0 2042 130 3 13 chr3 195997808 195998123 -22039035 + AluJo SINE Alu 1 312 0 215 298 17 33 chr3 195998456 195998637 -22038521 + (CACG)n Simple_repeat Simple_repeat 1 178 0 262 328 17 11 chr3 195998829 195999006 -22038152 + (CA)n Simple_repeat Simple_repeat 1 178 0 271 270 40 7 chr3 195999047 195999199 -22037959 + C-rich Low_complexity Low_complexity 5 161 0 331 223 43 125 chr3 195999212 195999384 -22037774 + L1MD2 LINE L1 6189 6348 -11 2002 108 3 18 chr3 195999384 195999694 -22037464 + AluSx SINE Alu 1 306 0 2080 108 10 3 chr3 196000628 196000925 -22036233 + AluSq SINE Alu 1 299 -14 2430 47 0 3 chr3 196000935 196001234 -22035924 + AluY SINE Alu 1 298 -13 454 274 59 29 chr3 196001891 196002095 -22035063 + MLT1C LTR MaLR 54 263 -204 504 32 0 0 chr3 196003145 196003207 -22033951 + (GGA)n Simple_repeat Simple_repeat 3 64 0 1155 94 0 0 chr3 196003262 196003442 -22033716 + (GGA)n Simple_repeat Simple_repeat 1 180 0 1095 102 0 0 chr3 196003471 196003648 -22033510 + (GGA)n Simple_repeat Simple_repeat 3 179 0 315 95 0 143 chr3 196004318 196004528 -22032630 + (CCCCAG)n Simple_repeat Simple_repeat 1 180 0 465 157 148 28 chr3 196004859 196004959 -22032199 + FLAM_C SINE Alu 1 116 -186 309 51 0 0 chr3 196004959 196004998 -22032160 + (CA)n Simple_repeat Simple_repeat 1 39 0 247 318 0 11 chr3 196005033 196005121 -22032037 - L3 LINE CR1 -633 944 858 405 310 61 0 chr3 196005623 196005852 -22031306 - MLT1E2 LTR MaLR -31 595 353 365 267 19 0 chr3 196006416 196006521 -22030637 - Charlie8 DNA MER1_type -2237 180 74 394 261 96 35 chr3 196008112 196008342 -22028816 - L1MB7 LINE L1 -10 6174 5931 245 314 48 0 chr3 196008365 196008470 -22028688 - L1MB7 LINE L1 -229 5955 5846 336 284 43 6 chr3 196008962 196009124 -22028034 + (CA)n Simple_repeat Simple_repeat 1 168 0 344 297 36 0 chr3 196009190 196009355 -22027803 + (CA)n Simple_repeat Simple_repeat 1 171 0 208 210 25 0 chr3 196009404 196009485 -22027673 + (CA)n Simple_repeat Simple_repeat 2 84 0 340 272 33 8 chr3 196009526 196009774 -22027384 + (CA)n Simple_repeat Simple_repeat 1 254 0 21 0 0 0 chr3 196011337 196011358 -22025800 + AT_rich Low_complexity Low_complexity 1 21 0 23 78 0 0 chr3 196012354 196012405 -22024753 + GC_rich Low_complexity Low_complexity 1 51 0 24 53 0 0 chr3 196012521 196012559 -22024599 + GC_rich Low_complexity Low_complexity 1 38 0 258 291 49 7 chr3 196012740 196012876 -22024282 + MIR SINE MIR 30 169 -70 2120 126 0 0 chr3 196013008 196013336 -22023822 + AluSx SINE Alu 1 328 0 239 342 125 37 chr3 196013768 196014063 -22023095 - L2 LINE L2 -1 3271 2951 2125 114 0 7 chr3 196014132 196014438 -22022720 + AluSx SINE Alu 1 304 -8 2162 109 3 0 chr3 196014438 196014731 -22022427 + AluSx SINE Alu 10 303 -9 213 250 0 0 chr3 196014777 196014825 -22022333 - MIR SINE MIR -72 136 89 2501 49 3 0 chr3 196014979 196015283 -22021875 - AluY SINE Alu -6 305 1 350 161 0 0 chr3 196015291 196015353 -22021805 - AluS SINE Alu -12 289 228 2108 118 3 0 chr3 196015398 196015695 -22021463 - AluSp SINE Alu -15 298 1 448 307 17 17 chr3 196015823 196015999 -22021159 - MER45A DNA AcHobo -2 176 1 376 311 22 7 chr3 196016001 196016136 -22021022 - MIR SINE MIR -81 181 45 456 202 28 65 chr3 196016301 196016463 -22020695 + MIR SINE MIR 7 161 -56 2132 105 0 3 chr3 196016465 196016779 -22020379 + AluSc SINE Alu 1 313 0 1983 134 0 0 chr3 196016865 196017155 -22020003 - AluSg SINE Alu -10 300 11 262 284 0 0 chr3 196017634 196017701 -22019457 - MER53 DNA DNA 0 189 123 2170 93 0 13 chr3 196017714 196018015 -22019143 - AluSg1 SINE Alu -10 299 3 1791 183 0 0 chr3 196018017 196018312 -22018846 - AluJb SINE Alu -17 295 1 1073 72 0 13 chr3 196018314 196018467 -22018691 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 804 158 0 0 chr3 196018467 196018587 -22018571 - FLAM_C SINE Alu -23 120 1 190 133 0 0 chr3 196018657 196018687 -22018471 + MIR SINE MIR 113 142 -120 541 160 17 25 chr3 196019187 196019426 -22017732 + (TCTCTG)n Simple_repeat Simple_repeat 1 237 0 1989 35 8 23 chr3 196019427 196019684 -22017474 - AluY SINE Alu 0 311 59 207 295 33 0 chr3 196119717 196119778 -21917380 + L2 LINE L2 3209 3271 -1 478 280 42 65 chr3 196119978 196120146 -21917012 - MIR SINE MIR -98 164 1 198 308 77 0 chr3 196120296 196120361 -21916797 + MIR SINE MIR 2 71 -191 254 167 0 17 chr3 196120393 196120453 -21916705 + MLT1F LTR MaLR 484 542 0 371 289 131 71 chr3 196121717 196122098 -21915060 - L1M2 LINE L1 -5621 1228 825 1441 107 9 54 chr3 196123085 196123309 -21913849 - AluSg/x SINE Alu -12 300 87 3679 231 33 15 chr3 196123314 196124263 -21912895 + Charlie1a DNA MER1_type 1 966 -489 1959 94 8 0 chr3 196124273 196124528 -21912630 + AluSq SINE Alu 5 261 -52 237 108 0 0 chr3 196124528 196124565 -21912593 + (CAGGA)n Simple_repeat Simple_repeat 4 40 0 1894 100 64 4 chr3 196124976 196125256 -21911902 - AluSx SINE Alu -15 297 1 610 301 12 0 chr3 196125722 196125885 -21911273 - MIR3 SINE MIR -6 202 38 10710 202 26 28 chr3 196127150 196130155 -21907003 + L1PA12 LINE L1 2525 5564 -604 265 104 62 0 chr3 196130155 196130203 -21906955 - MADE1 DNA Mariner -2 78 28 10710 202 26 28 chr3 196130203 196130807 -21906351 + L1PA12 LINE L1 5564 6168 0 1744 124 4 0 chr3 196130943 196131177 -21905981 + AluSq SINE Alu 1 235 -78 1300 194 130 0 chr3 196131177 196131430 -21905728 + AluJo SINE Alu 4 289 -13 249 108 0 0 chr3 196131439 196131476 -21905682 + (TG)n Simple_repeat Simple_repeat 2 38 0 8399 207 113 48 chr3 196131646 196135590 -21901568 - L1MA8 LINE L1 -3 7309 3622 2044 134 0 17 chr3 196135590 196135881 -21901277 - AluSq SINE Alu -27 286 1 8399 207 113 48 chr3 196135881 196135906 -21901252 - L1MA8 LINE L1 -3690 3622 3600 2233 116 3 3 chr3 196135906 196136216 -21900942 - AluSg SINE Alu 0 310 1 8399 207 113 48 chr3 196136216 196137394 -21899764 - L1MA8 LINE L1 -3712 3600 2032 2276 112 0 13 chr3 196137394 196137708 -21899450 + AluSq SINE Alu 1 310 -3 8399 207 113 48 chr3 196137708 196138225 -21898933 - L1MA8 LINE L1 -5280 2032 1550 1987 150 10 0 chr3 196139754 196140048 -21897110 + AluSx SINE Alu 1 297 -15 30 0 0 0 chr3 196140283 196140313 -21896845 + AT_rich Low_complexity Low_complexity 1 30 0 450 259 0 0 chr3 196140570 196140655 -21896503 - MER91A DNA MER1_type -95 101 17 296 325 171 8 chr3 196140792 196141143 -21896015 + L1ME4a LINE L1 5512 5919 -202 2224 131 19 3 chr3 196141157 196141517 -21895641 + MER47A DNA MER2_type 1 366 0 226 250 0 0 chr3 196141545 196141601 -21895557 + L1ME4a LINE L1 5986 6041 -80 423 233 0 10 chr3 196141902 196142005 -21895153 + L1MEc LINE L1 40 141 -6255 4905 149 43 37 chr3 196142022 196142377 -21894781 - L1MA9 LINE L1 -3 6309 5957 2238 101 3 7 chr3 196142377 196142685 -21894473 - AluY SINE Alu -4 307 1 4905 149 43 37 chr3 196142685 196142958 -21894200 - L1MA9 LINE L1 -355 5957 5687 2023 143 0 17 chr3 196142958 196143259 -21893899 - AluSx SINE Alu -16 296 1 4905 149 43 37 chr3 196143259 196143780 -21893378 - L1MA9 LINE L1 -625 5687 5148 229 325 0 0 chr3 196143782 196143865 -21893293 + L1MEc LINE L1 126 208 -6188 647 122 0 0 chr3 196143886 196143976 -21893182 + AluS SINE Alu 1 90 -222 4747 246 63 32 chr3 196143976 196144403 -21892755 + L1MEc LINE L1 326 738 -5658 385 122 0 112 chr3 196144403 196144501 -21892657 + L1PA10 LINE L1 6081 6167 -1 4747 246 63 32 chr3 196144501 196145407 -21891751 + L1MEc LINE L1 738 1740 -4656 2375 91 3 0 chr3 196145407 196145704 -21891454 + AluSp SINE Alu 1 298 -15 4747 246 63 32 chr3 196145704 196146292 -21890866 + L1MEc LINE L1 1740 2308 -4088 519 368 98 47 chr3 196146292 196146441 -21890717 + L1M2 LINE L1 20 160 -6689 1574 211 30 0 chr3 196146441 196146744 -21890414 + AluJo SINE Alu 1 312 0 519 368 98 47 chr3 196146744 196147143 -21890015 + L1M2 LINE L1 160 596 -6253 340 393 16 4 chr3 196147325 196147567 -21889591 + L1PA16 LINE L1 762 1006 -5844 7554 232 37 94 chr3 196147831 196148115 -21889043 + L1PA16 LINE L1 1264 1563 -5306 1877 168 0 9 chr3 196148115 196148430 -21888728 + AluJb SINE Alu 1 312 0 7554 232 37 94 chr3 196148430 196148932 -21888226 + L1PA16 LINE L1 1563 2092 -4777 2335 108 7 0 chr3 196148932 196149239 -21887919 + AluY SINE Alu 1 309 -2 7554 232 37 94 chr3 196149239 196150700 -21886458 + L1PA16 LINE L1 2092 3635 -3234 2039 119 0 0 chr3 196150700 196150969 -21886189 + AluSx SINE Alu 5 273 -39 7554 232 37 94 chr3 196150969 196151354 -21885804 + L1PA16 LINE L1 3635 4041 -2828 2017 153 0 0 chr3 196151354 196151655 -21885503 + AluSx SINE Alu 1 301 -11 7554 232 37 94 chr3 196151655 196152822 -21884336 + L1PA16 LINE L1 4041 5273 -1596 1143 119 0 0 chr3 196152822 196152998 -21884160 + (GGAA)n Simple_repeat Simple_repeat 4 179 0 7554 232 37 94 chr3 196152998 196155170 -21881988 + L1PA16 LINE L1 5273 6862 -7 580 300 44 4 chr3 196155178 196155451 -21881707 + L1ME LINE L1 2178 2461 -3685 228 192 0 0 chr3 196155493 196155545 -21881613 + L1ME LINE L1 2436 2487 -3659 603 232 21 11 chr3 196155588 196155778 -21881380 + L1ME LINE L1 2475 2666 -3480 822 142 6 56 chr3 196155799 196155961 -21881197 + FRAM SINE Alu 22 175 -1 1567 249 53 24 chr3 196155966 196156577 -21880581 + L1ME LINE L1 2683 3320 -2826 2217 119 17 0 chr3 196156577 196156872 -21880286 + AluSx SINE Alu 1 300 -12 1567 249 53 24 chr3 196156872 196156983 -21880175 + L1ME LINE L1 3320 3426 -2720 213 39 0 0 chr3 196157131 196157157 -21880001 + (T)n Simple_repeat Simple_repeat 1 26 0 346 274 136 10 chr3 196157411 196157718 -21879440 + L1ME LINE L1 5265 5604 -517 3541 206 25 19 chr3 196157728 196158700 -21878458 + L1MB8 LINE L1 3872 4849 -1297 830 239 0 0 chr3 196158706 196158861 -21878297 - FRAM SINE Alu -10 156 2 1229 147 0 0 chr3 196158872 196159049 -21878109 - AluJb SINE Alu -2 310 134 1737 144 19 60 chr3 196159049 196159368 -21877790 - AluJo SINE Alu -6 306 1 3089 192 27 37 chr3 196159370 196160675 -21876483 + L1MB8 LINE L1 4847 6076 -102 699 250 150 20 chr3 196160869 196161314 -21875844 - LTR1B LTR ERV1 -38 1240 10 2235 187 73 6 chr3 196161314 196161850 -21875308 - HUERS-P2 LTR ERV1 -13 3075 2468 3478 188 27 21 chr3 196161851 196162580 -21874578 - HUERS-P2 LTR ERV1 -1708 1380 647 445 232 7 70 chr3 196162582 196162724 -21874434 - HUERS-P2 LTR ERV1 -2954 134 2 441 248 50 14 chr3 196162948 196163089 -21874069 - LTR28 LTR ERV1 -470 550 405 519 237 132 12 chr3 196163131 196163326 -21873832 - LTR1 LTR ERV1 -564 221 28 521 180 20 0 chr3 196163327 196163427 -21873731 + L1MB8 LINE L1 6071 6172 -6 244 353 0 53 chr3 196163639 196163789 -21873369 - MLT1K LTR MaLR -340 248 107 197 303 115 55 chr3 196163799 196163964 -21873194 - L2 LINE L2 -1527 1787 1613 2180 108 3 7 chr3 196164181 196164478 -21872680 - AluSx SINE Alu -16 296 1 2124 121 3 0 chr3 196165138 196165436 -21871722 + AluSp SINE Alu 1 299 -14 363 192 0 0 chr3 196165436 196165509 -21871649 + GA-rich Low_complexity Low_complexity 3 75 0 26 30 0 0 chr3 196165621 196165654 -21871504 + AT_rich Low_complexity Low_complexity 1 33 0 2342 107 0 0 chr3 196166119 196166427 -21870731 - AluSp SINE Alu -5 308 1 2288 98 3 13 chr3 196166434 196166749 -21870409 - AluSx SINE Alu 0 312 1 398 187 71 31 chr3 196166788 196166921 -21870237 - L1MC/D LINE L1 -516 5828 5693 379 193 9 9 chr3 196167231 196167340 -21869818 + CT-rich Low_complexity Low_complexity 4 112 0 2248 117 3 3 chr3 196167447 196167756 -21869402 + AluSq SINE Alu 1 309 -4 24 32 0 0 chr3 196168679 196168710 -21868448 + AT_rich Low_complexity Low_complexity 1 31 0 342 179 35 118 chr3 196169194 196169322 -21867836 - MIR SINE MIR -45 163 41 4723 73 41 1 chr3 196169435 196170091 -21867067 + L1PB1 LINE L1 5463 6144 -7 1900 187 0 0 chr3 196170327 196170637 -21866521 - AluJb SINE Alu -2 310 1 22 56 0 0 chr3 196170638 196170674 -21866484 + AT_rich Low_complexity Low_complexity 1 36 0 331 248 109 20 chr3 196170697 196170798 -21866360 - L2 LINE L2 -10 3303 3194 186 43 0 0 chr3 196170930 196170953 -21866205 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr3 196171152 196171174 -21865984 + AT_rich Low_complexity Low_complexity 1 22 0 1045 141 0 0 chr3 196171174 196171323 -21865835 - AluSg/x SINE Alu -26 286 138 234 0 0 0 chr3 196171511 196171537 -21865621 + (A)n Simple_repeat Simple_repeat 1 26 0 1899 125 27 0 chr3 196171547 196171842 -21865316 + AluSx SINE Alu 5 307 -5 2646 144 6 69 chr3 196171842 196172376 -21864782 + LTR9 LTR ERV1 113 612 0 225 172 125 31 chr3 196172379 196172443 -21864715 - HAL1 LINE L1 -371 2136 2067 2178 88 4 0 chr3 196172488 196172761 -21864397 - AluSp SINE Alu -39 274 1 380 290 85 35 chr3 196172869 196173069 -21864089 - HAL1 LINE L1 -582 1925 1716 429 111 44 44 chr3 196173069 196173204 -21863954 + CT-rich Low_complexity Low_complexity 5 139 0 1748 131 52 64 chr3 196173291 196173710 -21863448 + LTR37A LTR ERV1 13 426 0 268 204 0 0 chr3 196173744 196173798 -21863360 - HAL1 LINE L1 -883 1624 1571 182 81 194 65 chr3 196174131 196174193 -21862965 - L3 LINE CR1 -636 941 872 2264 102 0 13 chr3 196174430 196174743 -21862415 + AluSx SINE Alu 1 309 -3 284 73 0 0 chr3 196174883 196174924 -21862234 + Alu SINE Alu 1 41 -259 599 88 0 0 chr3 196174924 196175004 -21862154 + AluSg/x SINE Alu 213 292 -18 1967 141 13 16 chr3 196176052 196176364 -21860794 + AluSq SINE Alu 1 311 -2 1515 187 40 15 chr3 196176584 196176980 -21860178 - L1 LINE L1 -2391 5174 4769 1803 138 48 6 chr3 196176980 196177292 -21859866 + THE1B LTR MaLR 1 325 -39 980 95 0 29 chr3 196177295 196177432 -21859726 - AluSq/x SINE Alu -180 133 1 265 128 0 0 chr3 196177435 196177474 -21859684 + THE1B LTR MaLR 317 355 0 295 41 41 0 chr3 196177495 196177544 -21859614 + (TTG)n Simple_repeat Simple_repeat 1 51 0 1838 153 11 0 chr3 196177550 196177825 -21859333 - AluSx SINE Alu -30 282 5 4142 212 67 18 chr3 196177830 196179347 -21857811 - L1 LINE L1 -2808 4757 3165 3515 117 53 22 chr3 196179353 196179993 -21857165 + L1PB1 LINE L1 1413 2072 -4791 1969 220 85 0 chr3 196179980 196180476 -21856682 + L1PB1 LINE L1 4221 4758 -2104 * 683 182 20 0 chr3 196180522 196180670 -21856488 + L1MA7 LINE L1 4517 4667 -1479 * 5928 149 10 11 chr3 196180665 196182774 -21854384 + L1PB1 LINE L1 4762 6867 0 27 0 0 0 chr3 196183262 196183289 -21853869 + AT_rich Low_complexity Low_complexity 1 27 0 4015 167 44 22 chr3 196183315 196183663 -21853495 + L1MA7 LINE L1 5414 5753 -538 2162 113 0 7 chr3 196183663 196183956 -21853202 - AluSg SINE Alu -19 291 1 4015 167 44 22 chr3 196183956 196183977 -21853181 + L1MA7 LINE L1 5753 5772 -519 351 0 0 0 chr3 196183977 196184016 -21853142 + (CA)n Simple_repeat Simple_repeat 2 40 0 4015 167 44 22 chr3 196184016 196184500 -21852658 + L1MA7 LINE L1 5772 6287 -4 22 20 6 0 chr3 196185075 196185135 -21852023 + AT_rich Low_complexity Low_complexity 1 29 0 667 254 65 18 chr3 196185388 196185557 -21851601 + MER91B DNA MER1_type 14 190 0 210 265 44 29 chr3 196185565 196185633 -21851525 + L3 LINE CR1 324 392 -1185 211 315 55 0 chr3 196185711 196185784 -21851374 + MIR SINE MIR 2 78 -184 395 284 70 10 chr3 196185812 196186013 -21851145 + L1ME LINE L1 5566 5778 -343 319 375 0 0 chr3 196186027 196186131 -21851027 - L2 LINE L2 0 3272 3169 23 0 0 0 chr3 196186348 196186371 -21850787 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 196186862 196186884 -21850274 + AT_rich Low_complexity Low_complexity 1 22 0 317 298 50 71 chr3 196187647 196187885 -21849273 + L2 LINE L2 1928 2160 -1154 550 250 92 12 chr3 196187890 196188054 -21849104 + MIR SINE MIR 37 213 -49 937 143 8 0 chr3 196188054 196188187 -21848971 + AluSq/x SINE Alu 1 134 -179 596 219 32 110 chr3 196188354 196188600 -21848558 + L2 LINE L2 2209 2435 -879 44 35 0 0 chr3 196188620 196188678 -21848480 + AT_rich Low_complexity Low_complexity 1 58 0 522 200 47 74 chr3 196188683 196188873 -21848285 - L1MC5 LINE L1 -109 7852 7668 227 227 133 31 chr3 196188899 196189027 -21848131 - L1MC5 LINE L1 -389 7572 7432 1081 223 46 61 chr3 196189029 196189441 -21847717 - L1MC5 LINE L1 -585 7376 6971 1970 122 4 11 chr3 196189445 196189724 -21847434 - AluSx SINE Alu -14 298 22 560 318 54 16 chr3 196189726 196189984 -21847174 - L1MC4a LINE L1 -929 6879 6612 2302 71 4 0 chr3 196189987 196190295 -21846863 - AluY SINE Alu 0 309 1 25 51 0 0 chr3 196190328 196190367 -21846791 + AT_rich Low_complexity Low_complexity 1 39 0 4846 143 12 8 chr3 196190367 196191230 -21845928 - L1PA15 LINE L1 0 6165 5300 239 54 27 0 chr3 196191697 196191734 -21845424 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 3705 194 60 19 chr3 196192999 196193344 -21843814 - L1PA15 LINE L1 -843 5303 4973 2262 78 3 56 chr3 196193344 196193663 -21843495 + AluY SINE Alu 1 302 -9 3705 194 60 19 chr3 196193663 196194254 -21842904 - L1PA15 LINE L1 -1173 4973 4329 24 32 0 0 chr3 196194258 196194289 -21842869 + AT_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chr3 196194491 196194523 -21842635 + AT_rich Low_complexity Low_complexity 1 32 0 26 30 0 0 chr3 196194659 196194692 -21842466 + AT_rich Low_complexity Low_complexity 1 33 0 456 253 88 21 chr3 196194893 196195087 -21842071 - L1MC4a LINE L1 -1871 5937 5731 1338 194 81 4 chr3 196195087 196195315 -21841843 + MER63 DNA MER1_type 1 210 -850 1670 208 0 16 chr3 196195315 196195632 -21841526 - AluJb SINE Alu 0 312 1 1338 194 81 4 chr3 196195632 196195783 -21841375 + MER63 DNA MER1_type 210 1060 0 1110 238 52 14 chr3 196195784 196196129 -21841029 - L1MC4a LINE L1 -854 5451 5367 467 344 53 9 chr3 196196198 196196425 -21840733 + L2 LINE L2 2565 2801 -513 915 113 0 15 chr3 196196643 196196776 -21840382 + FLAM_C SINE Alu 1 131 -2 1316 184 36 30 chr3 196197142 196197186 -21839972 - MLT2D LTR ERVL 0 414 372 514 0 30 0 chr3 196197186 196197252 -21839906 + (GA)n Simple_repeat Simple_repeat 1 68 0 1929 118 59 3 chr3 196197254 196197541 -21839617 - AluSq SINE Alu -10 303 1 1316 184 36 30 chr3 196197541 196197824 -21839334 - MLT2D LTR ERVL -42 372 82 280 103 0 0 chr3 196197861 196197900 -21839258 + MLT1B LTR MaLR 34 72 -318 * 569 250 0 15 chr3 196197888 196198024 -21839134 + MLT1C LTR MaLR 334 467 0 205 276 35 0 chr3 196198632 196198690 -21838468 + L2 LINE L2 3211 3270 -2 * 357 302 39 29 chr3 196198671 196198817 -21838341 + MIR SINE MIR 6 150 -59 22 35 0 0 chr3 196199173 196199202 -21837956 + AT_rich Low_complexity Low_complexity 1 29 0 341 194 200 45 chr3 196199247 196199402 -21837756 + MER46C DNA MER2_type 1 179 -159 210 71 0 0 chr3 196200104 196200132 -21837026 + (TC)n Simple_repeat Simple_repeat 1 28 0 28 48 0 0 chr3 196200249 196200291 -21836867 + AT_rich Low_complexity Low_complexity 1 42 0 633 236 174 20 chr3 196200338 196200533 -21836625 + MIR SINE MIR 5 229 -33 769 207 143 12 chr3 196201232 196201457 -21835701 - L1ME1 LINE L1 -2 6164 5925 1907 232 71 59 chr3 196202437 196203130 -21834028 + L1M4 LINE L1 2110 2810 -3336 890 178 7 0 chr3 196203553 196203699 -21833459 - FRAM SINE Alu -30 146 1 277 317 0 12 chr3 196203742 196203824 -21833334 - L2 LINE L2 0 3313 3233 444 246 63 8 chr3 196205023 196205149 -21832009 - MIR SINE MIR -71 191 59 225 238 150 6 chr3 196205399 196205559 -21831599 - L1ME4a LINE L1 0 6121 5939 336 311 273 0 chr3 196205872 196206055 -21831103 - L1ME4a LINE L1 -407 5714 5482 301 356 93 0 chr3 196206466 196206584 -21830574 + L2 LINE L2 3144 3272 0 299 298 21 0 chr3 196207618 196207712 -21829446 + MER94 DNA DNA 39 134 0 396 266 104 14 chr3 196207792 196208014 -21829144 - L1ME4a LINE L1 0 6121 5880 240 218 89 30 chr3 196208031 196208132 -21829026 - L1ME4a LINE L1 -295 5826 5720 1514 127 4 9 chr3 196208594 196208823 -21828335 + AluSg/x SINE Alu 79 306 -4 24 67 0 0 chr3 196209096 196209141 -21828017 + AT_rich Low_complexity Low_complexity 1 45 0 2209 111 0 7 chr3 196209318 196209615 -21827543 - AluSg SINE Alu -12 298 4 2259 135 0 0 chr3 196209912 196210223 -21826935 + AluSx SINE Alu 1 311 -1 1195 145 90 6 chr3 196211853 196212100 -21825058 + MER61-int LTR ERV1 1398 3721 -3594 499 50 0 0 chr3 196212100 196212160 -21824998 + Alu SINE Alu 237 296 -15 1766 91 8 24 chr3 196212162 196212414 -21824744 + MER61-int LTR ERV1 3565 3812 -1405 970 259 85 22 chr3 196212901 196212972 -21824186 + MER119 DNA MER1_type 1 66 -517 2166 123 3 0 chr3 196212972 196213265 -21823893 - AluSx SINE Alu -18 294 1 970 259 85 22 chr3 196213265 196213463 -21823695 + MER119 DNA MER1_type 66 287 -296 417 199 32 1 chr3 196213468 196213614 -21823544 - MLT1E LTR MaLR -438 155 1 387 60 0 0 chr3 196213699 196213749 -21823409 + (TTCA)n Simple_repeat Simple_repeat 4 53 0 181 207 103 17 chr3 196213756 196213814 -21823344 + MIR SINE MIR 200 262 0 813 235 117 9 chr3 196214465 196214678 -21822480 + MIR SINE MIR 17 252 -10 23 33 0 0 chr3 196215284 196215314 -21821844 + AT_rich Low_complexity Low_complexity 1 30 0 2169 125 0 10 chr3 196215334 196215638 -21821520 - AluSx SINE Alu -11 301 1 880 147 7 0 chr3 196215646 196215782 -21821376 - AluJb SINE Alu -175 137 1 1631 204 130 42 chr3 196216259 196216759 -21820399 - LTR10B LTR ERV1 -3 544 1 2187 126 0 3 chr3 196216959 196217269 -21819889 + AluSx SINE Alu 4 312 0 2618 33 3 0 chr3 196217400 196217699 -21819459 + AluY SINE Alu 1 300 -11 879 135 14 14 chr3 196217751 196217892 -21819266 + BC200 scRNA scRNA 1 141 -59 2092 81 8 0 chr3 196218118 196218377 -21818781 + AluY SINE Alu 30 290 -21 1361 172 0 18 chr3 196218467 196218694 -21818464 - AluJo SINE Alu -12 300 78 654 214 17 0 chr3 196218996 196219113 -21818045 + FLAM_A SINE Alu 22 140 -2 774 129 29 65 chr3 196219226 196219365 -21817793 + AluJb SINE Alu 171 304 -8 2842 202 77 98 chr3 196219637 196220210 -21816948 - L1MC3 LINE L1 -1 7784 7200 2141 137 0 13 chr3 196220210 196220525 -21816633 - AluSx SINE Alu -1 311 1 2842 202 77 98 chr3 196220525 196220540 -21816618 - L1MC3 LINE L1 -585 7200 7186 272 207 69 0 chr3 196220540 196220598 -21816560 - MLT1F1 LTR MaLR -443 124 63 2842 202 77 98 chr3 196220598 196220780 -21816378 - L1MC3 LINE L1 -599 7186 7002 2291 94 0 3 chr3 196220780 196221098 -21816060 - AluSq SINE Alu 0 317 1 1395 191 124 0 chr3 196221101 196221358 -21815800 - AluJb SINE Alu -10 292 4 2842 202 77 98 chr3 196221358 196221564 -21815594 - L1MC3 LINE L1 -785 7000 6766 237 125 0 0 chr3 196221593 196221625 -21815533 + Alu SINE Alu 2 33 -269 2142 115 60 24 chr3 196221626 196221957 -21815201 + MER61A LTR ERV1 1 343 0 2676 155 96 32 chr3 196221958 196222615 -21814543 + MER61A-int LTR ERV1 1 787 -4430 1326 124 57 7 chr3 196222600 196222885 -21814273 + MER61A-int LTR ERV1 1320 1623 -3594 * 438 127 0 0 chr3 196222885 196222948 -21814210 + Alu SINE Alu 237 299 -12 4094 81 7 32 chr3 196222952 196223071 -21814087 + MER61A-int LTR ERV1 2178 2298 -2919 2176 130 0 0 chr3 196223071 196223372 -21813786 - AluSx SINE Alu -11 301 1 4094 81 7 32 chr3 196223372 196223843 -21813315 + MER61A-int LTR ERV1 2298 2753 -2464 1022 113 0 0 chr3 196223843 196223976 -21813182 - AluSq/x SINE Alu -179 133 1 17479 81 40 24 chr3 196223977 196224207 -21812951 + MER61A-int LTR ERV1 2735 2960 -2257 2252 106 0 3 chr3 196224207 196224500 -21812658 - AluSq SINE Alu -17 296 5 17479 81 40 24 chr3 196224500 196225097 -21812061 + MER61A-int LTR ERV1 2960 3546 -1671 2198 100 0 20 chr3 196225097 196225398 -21811760 + AluSg SINE Alu 1 295 -15 17479 81 40 24 chr3 196225398 196226988 -21810170 + MER61A-int LTR ERV1 3546 5194 -23 2312 95 3 13 chr3 196226988 196227293 -21809865 - AluSp SINE Alu -11 302 1 17479 81 40 24 chr3 196227293 196227318 -21809840 + MER61A-int LTR ERV1 5194 5217 0 1724 151 73 19 chr3 196227318 196227635 -21809523 + MER61A LTR ERV1 1 334 -9 1587 146 61 0 chr3 196227635 196227896 -21809262 + AluSx SINE Alu 22 298 -14 866 268 14 0 chr3 196227906 196228126 -21809032 - L1MC4 LINE L1 -1060 6982 6760 2078 125 20 3 chr3 196228418 196228722 -21808436 + AluSg SINE Alu 1 309 -1 344 217 75 9 chr3 196228963 196229069 -21808089 + MER112 DNA MER1_type 118 230 -30 1331 89 0 6 chr3 196229076 196229245 -21807913 + AluY SINE Alu 108 275 -36 207 0 0 0 chr3 196229252 196229275 -21807883 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2416 84 0 3 chr3 196229286 196229585 -21807573 + AluSq SINE Alu 1 298 -15 483 288 189 14 chr3 196229668 196229880 -21807278 - MIR SINE MIR 0 262 14 299 176 0 0 chr3 196230250 196230301 -21806857 + MER66A LTR ERV1 287 337 -141 2050 92 6 95 chr3 196230317 196230643 -21806515 + AluSq SINE Alu 1 297 -16 1788 136 86 0 chr3 196230644 196230923 -21806235 + AluSx SINE Alu 1 303 -9 182 88 0 29 chr3 196230923 196230957 -21806201 + (GA)n Simple_repeat Simple_repeat 1 33 0 219 36 0 0 chr3 196230973 196231001 -21806157 + (GGGA)n Simple_repeat Simple_repeat 2 29 0 623 306 123 18 chr3 196231061 196231558 -21805600 - HAL1 LINE L1 -98 2409 1861 568 153 79 35 chr3 196231560 196231756 -21805402 + AluSg SINE Alu 2 310 0 24 0 0 0 chr3 196231799 196231823 -21805335 + AT_rich Low_complexity Low_complexity 1 24 0 2335 256 70 10 chr3 196231908 196232111 -21805047 - HAL1 LINE L1 -638 1869 1680 1942 137 19 23 chr3 196232111 196232283 -21804875 - AluSx SINE Alu -6 306 135 2401 87 0 0 chr3 196232283 196232583 -21804575 - AluSg SINE Alu -5 305 6 2148 122 0 0 chr3 196232588 196232882 -21804276 - AluSc SINE Alu -15 294 1 1942 137 19 23 chr3 196232882 196233010 -21804148 - AluSx SINE Alu -181 131 1 2335 256 70 10 chr3 196233010 196233586 -21803572 - HAL1 LINE L1 -827 1680 1043 256 167 39 26 chr3 196233586 196233664 -21803494 + (TA)n Simple_repeat Simple_repeat 1 79 0 234 0 0 0 chr3 196233669 196233695 -21803463 + (CA)n Simple_repeat Simple_repeat 2 27 0 707 134 107 94 chr3 196233706 196233855 -21803303 - AluJo SINE Alu -160 152 2 2032 112 0 7 chr3 196233861 196234137 -21803021 - AluSq SINE Alu -17 296 23 724 125 0 0 chr3 196234142 196234246 -21802912 + AluSg/x SINE Alu 203 306 -6 643 212 0 8 chr3 196234300 196234418 -21802740 + FLAM_C SINE Alu 2 118 -25 396 59 0 0 chr3 196234423 196234474 -21802684 + (CA)n Simple_repeat Simple_repeat 2 52 0 533 230 183 9 chr3 196234475 196234705 -21802453 - L1ME4a LINE L1 -65 6056 5787 1888 158 3 0 chr3 196234725 196235017 -21802141 - AluJb SINE Alu -19 293 1 236 305 63 17 chr3 196235028 196235202 -21801956 - L1ME4a LINE L1 0 6121 5940 192 338 44 16 chr3 196235351 196235481 -21801677 + MIR SINE MIR 26 162 -46 273 160 13 27 chr3 196235674 196235749 -21801409 + GA-rich Low_complexity Low_complexity 2 75 0 3105 179 22 46 chr3 196235762 196236140 -21801018 + L1MB8 LINE L1 5514 5794 -384 1876 143 0 52 chr3 196236140 196236468 -21800690 + AluJb SINE Alu 1 311 -1 3105 179 22 46 chr3 196236468 196236808 -21800350 + L1MB8 LINE L1 5794 6141 -37 346 133 0 0 chr3 196236927 196236972 -21800186 + FRAM SINE Alu 70 114 -52 913 217 42 38 chr3 196236973 196237038 -21800120 + AluJb SINE Alu 86 149 -163 1831 97 66 8 chr3 196237038 196237296 -21799862 + AluSg SINE Alu 1 273 -37 253 0 26 26 chr3 196237303 196237341 -21799817 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 913 217 42 38 chr3 196237341 196237479 -21799679 + AluJb SINE Alu 154 298 -14 182 180 40 0 chr3 196238527 196238577 -21798581 + C-rich Low_complexity Low_complexity 4 55 0 180 0 0 0 chr3 196239450 196239470 -21797688 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 182 386 0 70 chr3 196240881 196240995 -21796163 + MIR3 SINE MIR 6 111 -97 645 219 66 72 chr3 196241127 196241426 -21795732 - L1ME1 LINE L1 -17 6149 5854 233 200 0 0 chr3 196241826 196241866 -21795292 - L1ME4a LINE L1 -1883 5925 5886 547 247 62 0 chr3 196242087 196242249 -21794909 - L1MB7 LINE L1 -5 6179 6008 1987 122 3 45 chr3 196242336 196242648 -21794510 - AluSx SINE Alu -13 299 1 1977 111 7 17 chr3 196242780 196243077 -21794081 - AluSc SINE Alu -15 294 1 2414 89 0 0 chr3 196243608 196243911 -21793247 + AluSg SINE Alu 1 303 -7 185 337 11 0 chr3 196244148 196244243 -21792915 - MIR SINE MIR -19 243 148 838 163 7 0 chr3 196244244 196244379 -21792779 - AluJo SINE Alu -176 136 1 296 307 177 23 chr3 196244722 196244937 -21792221 - MIR SINE MIR -5 257 10 940 146 115 31 chr3 196245079 196245214 -21791944 + MER33 DNA MER1_type 5 168 -2417 2160 122 3 0 chr3 196245214 196245525 -21791633 - AluSx SINE Alu 0 312 1 940 146 115 31 chr3 196245525 196245615 -21791543 + MER33 DNA MER1_type 168 249 -75 2024 116 22 0 chr3 196245619 196245896 -21791262 - AluSg SINE Alu -16 294 12 222 227 0 0 chr3 196246225 196246269 -21790889 + L2 LINE L2 3264 3307 -6 1877 159 23 0 chr3 196246451 196246752 -21790406 - AluSx SINE Alu -4 308 1 2056 89 23 33 chr3 196247029 196247331 -21789827 + AluSq SINE Alu 1 299 -14 279 314 64 69 chr3 196248094 196248499 -21788659 - L1ME1 LINE L1 -509 5657 5255 1644 163 3 53 chr3 196248556 196248857 -21788301 - AluJb SINE Alu -26 286 1 515 151 0 54 chr3 196249720 196249813 -21787345 - FLAM_A SINE Alu -35 107 20 1956 132 31 0 chr3 196249903 196250191 -21786967 - AluSx SINE Alu -15 297 1 701 207 101 17 chr3 196250192 196250371 -21786787 - MER105 DNA DNA -10 194 1 1157 66 0 0 chr3 196250596 196250733 -21786425 - AluSq/x SINE Alu -175 137 1 328 213 134 16 chr3 196250741 196250868 -21786290 - HsTC2a DNA Tc2 -7 735 594 1061 248 45 62 chr3 196250928 196251023 -21786135 - HsTC2a DNA Tc2 -1449 451 356 2219 99 7 0 chr3 196251023 196251316 -21785842 + AluSg SINE Alu 1 295 -15 1061 248 45 62 chr3 196251316 196251639 -21785519 - HsTC2a DNA Tc2 -1544 356 40 261 0 0 0 chr3 196252420 196252449 -21784709 + (TA)n Simple_repeat Simple_repeat 2 30 0 468 308 134 64 chr3 196253926 196254696 -21782462 - L1ME1 LINE L1 -1007 5139 4316 1936 102 63 0 chr3 196254862 196255146 -21782012 - AluSp SINE Alu -11 302 1 2160 95 7 3 chr3 196255924 196256219 -21780939 + AluSg SINE Alu 1 296 -14 2020 113 34 7 chr3 196256696 196256989 -21780169 + AluSx SINE Alu 3 303 -9 2116 130 0 0 chr3 196257159 196257460 -21779698 - AluSq SINE Alu -12 301 1 197 286 0 0 chr3 196257628 196257677 -21779481 + L2 LINE L2 3254 3302 -11 1518 180 15 7 chr3 196257681 196257953 -21779205 - AluJb SINE Alu -9 303 30 325 233 45 125 chr3 196257984 196258160 -21778998 - HAL1 LINE L1 -2321 186 25 331 302 249 21 chr3 196258765 196258954 -21778204 - MIR SINE MIR -17 245 14 329 343 19 9 chr3 196259073 196259181 -21777977 - MIR SINE MIR -134 128 20 2031 105 3 14 chr3 196259770 196260056 -21777102 + AluSq SINE Alu 1 283 -30 394 140 0 0 chr3 196261757 196261814 -21775344 - AluS SINE Alu -244 57 1 2129 129 3 0 chr3 196261823 196262133 -21775025 - AluSx SINE Alu -1 311 1 1933 148 0 0 chr3 196262200 196262509 -21774649 - AluSx SINE Alu 0 309 1 22 0 0 0 chr3 196263564 196263586 -21773572 + AT_rich Low_complexity Low_complexity 1 22 0 2211 92 3 0 chr3 196264479 196264789 -21772369 - AluSp SINE Alu 0 311 1 1881 162 7 0 chr3 196264827 196265129 -21772029 - AluSx SINE Alu -2 310 7 470 211 72 90 chr3 196265374 196265540 -21771618 - MER21B LTR ERV1 -373 490 328 414 187 0 0 chr3 196265853 196265928 -21771230 - MER116 DNA Mariner -5 75 1 2181 107 13 0 chr3 196266508 196266817 -21770341 - AluSp SINE Alu 0 313 1 1695 149 3 25 chr3 196267120 196267402 -21769756 - AluJb SINE Alu -5 307 32 2650 55 0 0 chr3 196268038 196268347 -21768811 + AluY SINE Alu 1 309 -2 2278 106 3 0 chr3 196268906 196269208 -21767950 - AluSx SINE Alu -9 303 1 2072 91 42 14 chr3 196269208 196269493 -21767665 - AluSx SINE Alu -4 308 15 2404 61 14 0 chr3 196269860 196270153 -21767005 - AluSp SINE Alu -16 297 1 240 91 0 91 chr3 196270172 196270216 -21766942 - Looper DNA T2_type 0 1558 1519 1861 138 14 34 chr3 196270267 196270563 -21766595 - AluJo SINE Alu -18 294 5 1451 184 0 26 chr3 196270599 196270865 -21766293 - AluJb SINE Alu -53 259 1 4544 187 96 60 chr3 196270865 196271337 -21765821 - Looper DNA T2_type -135 1423 969 1510 217 3 16 chr3 196271337 196271650 -21765508 - AluJb SINE Alu -3 309 1 4544 187 96 60 chr3 196271650 196272547 -21764611 - Looper DNA T2_type -589 969 5 1958 132 20 0 chr3 196272991 196273287 -21763871 - AluSq SINE Alu -11 302 1 1994 125 10 0 chr3 196275328 196275624 -21761534 - AluSx SINE Alu -13 299 1 1989 155 134 7 chr3 196276426 196276858 -21760300 - L1MB2 LINE L1 0 6171 5685 1812 160 0 33 chr3 196276871 196277171 -21759987 + AluJo SINE Alu 1 290 -22 192 156 0 0 chr3 196277702 196277734 -21759424 - MIR SINE MIR -14 248 217 620 188 0 0 chr3 196277861 196277962 -21759196 + FLAM_A SINE Alu 1 101 -41 227 226 16 0 chr3 196277974 196278036 -21759122 + (TA)n Simple_repeat Simple_repeat 2 64 0 850 168 0 0 chr3 196278067 196278198 -21758960 - FLAM_C SINE Alu -12 131 1 755 236 0 34 chr3 196278350 196278528 -21758630 + FRAM SINE Alu 1 171 -5 318 261 161 45 chr3 196278529 196278728 -21758430 + MIR SINE MIR 26 247 -15 1871 132 6 46 chr3 196278759 196279084 -21758074 - AluJo SINE Alu 0 312 1 198 0 0 0 chr3 196280813 196280835 -21756323 + (T)n Simple_repeat Simple_repeat 1 22 0 2266 78 0 39 chr3 196280928 196281237 -21755921 - AluSg SINE Alu -11 299 3 24 32 0 0 chr3 196283975 196284006 -21753152 + AT_rich Low_complexity Low_complexity 1 31 0 3127 76 16 16 chr3 196284180 196284626 -21752532 - L1PB2 LINE L1 -1 6150 5705 2306 100 0 0 chr3 196284745 196285046 -21752112 - AluSc SINE Alu -8 301 1 1819 167 3 0 chr3 196286411 196286705 -21750453 - AluJb SINE Alu -17 295 1 22 0 10 0 chr3 196286746 196286810 -21750348 + AT_rich Low_complexity Low_complexity 1 22 0 1751 131 41 69 chr3 196286989 196287309 -21749849 + AluJo SINE Alu 1 311 -1 23 33 0 0 chr3 196288038 196288068 -21749090 + AT_rich Low_complexity Low_complexity 1 30 0 187 266 114 13 chr3 196288572 196288651 -21748507 + L2 LINE L2 3170 3256 -16 28 0 0 0 chr3 196289032 196289060 -21748098 + AT_rich Low_complexity Low_complexity 1 28 0 252 0 0 0 chr3 196290614 196290642 -21746516 + (TA)n Simple_repeat Simple_repeat 1 28 0 514 207 96 0 chr3 196290687 196290822 -21746336 + MER104 DNA Tc2 32 179 -1 2270 86 10 0 chr3 196290962 196291254 -21745904 - AluSp SINE Alu -18 295 1 842 174 47 6 chr3 196291361 196291533 -21745625 - MLT1D LTR MaLR -1 504 326 695 172 7 29 chr3 196291541 196291678 -21745480 - MLT1D LTR MaLR -420 204 73 274 314 78 29 chr3 196291822 196292026 -21745132 + L3b LINE CR1 1355 1568 -15 374 93 0 93 chr3 196293088 196293163 -21743995 - MADE1 DNA Mariner 0 80 13 230 0 0 0 chr3 196293155 196293182 -21743976 + MADE1 DNA Mariner 36 62 -18 * 479 222 85 20 chr3 196293178 196293331 -21743827 - MER104 DNA Tc2 -13 167 5 313 230 110 40 chr3 196293649 196293749 -21743409 + MLT1E LTR MaLR 131 237 -356 351 0 0 0 chr3 196296324 196296363 -21740795 + (TA)n Simple_repeat Simple_repeat 2 40 0 1782 142 36 0 chr3 196298122 196298403 -21738755 + AluJb SINE Alu 1 291 -21 325 130 174 14 chr3 196299293 196299362 -21737796 + MADE1 DNA Mariner 1 80 0 24 0 0 0 chr3 196299907 196299931 -21737227 + AT_rich Low_complexity Low_complexity 1 24 0 2002 116 56 0 chr3 196300098 196300383 -21736775 - AluSq SINE Alu -12 301 1 21 0 0 0 chr3 196301368 196301389 -21735769 + AT_rich Low_complexity Low_complexity 1 21 0 195 100 0 0 chr3 196303004 196303034 -21734124 + (T)n Simple_repeat Simple_repeat 1 30 0 355 247 37 0 chr3 196304544 196304625 -21732533 + 7SLRNA srpRNA srpRNA 1 84 -236 21 0 0 0 chr3 196305489 196305510 -21731648 + AT_rich Low_complexity Low_complexity 1 21 0 349 184 0 26 chr3 196305681 196305757 -21731401 - MER116 DNA Mariner -6 74 1 199 243 95 27 chr3 196305987 196306061 -21731097 + MIR3 SINE MIR 103 181 -27 235 328 103 17 chr3 196307596 196307712 -21729446 + MIR SINE MIR 24 149 -59 266 247 313 16 chr3 196308016 196308198 -21728960 + MIR SINE MIR 17 252 -10 1689 226 180 11 chr3 196308696 196309236 -21727922 - MER82 DNA MER2_type 0 653 23 555 176 10 39 chr3 196309873 196309975 -21727183 + AluJb SINE Alu 153 251 -61 242 333 0 29 chr3 196310217 196310286 -21726872 + L2 LINE L2 3116 3182 -90 454 236 47 9 chr3 196311178 196311284 -21725874 + MER5A DNA MER1_type 2 111 -78 2305 94 7 0 chr3 196312222 196312520 -21724638 - AluSx SINE Alu -10 302 3 950 136 0 0 chr3 196314298 196314430 -21722728 - FLAM_C SINE Alu 0 133 2 2315 66 10 26 chr3 196314662 196314965 -21722193 + AluY SINE Alu 1 298 -13 205 289 72 12 chr3 196316529 196316612 -21720546 + MIR3 SINE MIR 111 198 -10 425 243 90 0 chr3 196316993 196317104 -21720054 + MIR SINE MIR 60 180 -82 939 216 35 62 chr3 196317335 196317673 -21719485 - MLT1D LTR MaLR -176 329 1 511 219 118 84 chr3 196317837 196318075 -21719083 + MER112 DNA MER1_type 3 248 -12 231 278 0 0 chr3 196318146 196318200 -21718958 - MIR SINE MIR -29 233 180 753 273 113 68 chr3 196318248 196318691 -21718467 + LTR33 LTR ERVL 3 465 -56 1244 181 42 0 chr3 196318696 196318955 -21718203 + MLT1A1 LTR MaLR 2 271 -94 762 161 74 12 chr3 196318959 196319121 -21718037 + MLT1A1 LTR MaLR 194 365 0 970 178 0 0 chr3 196319169 196319326 -21717832 - FRAM SINE Alu -8 158 2 2057 243 112 64 chr3 196319343 196320153 -21717005 - L2 LINE L2 -684 2630 1782 2375 92 0 0 chr3 196320153 196320457 -21716701 + AluSc SINE Alu 1 304 -5 327 277 11 47 chr3 196320516 196320656 -21716502 - MIR3 SINE MIR -3 205 71 2976 118 24 7 chr3 196320996 196321453 -21715705 + MER4C LTR ERV1 1 465 0 21 0 0 0 chr3 196321812 196321833 -21715325 + AT_rich Low_complexity Low_complexity 1 21 0 1673 179 19 23 chr3 196321898 196322205 -21714953 - AluJo SINE Alu -6 306 1 324 0 0 0 chr3 196322254 196322290 -21714868 + (TG)n Simple_repeat Simple_repeat 2 37 0 464 296 156 0 chr3 196323431 196323617 -21713541 - MER58C DNA MER1_type 0 215 1 2425 89 0 13 chr3 196323790 196324105 -21713053 - AluY SINE Alu 0 311 1 29592 102 8 25 chr3 196324127 196326035 -21711123 - L1PA7 LINE L1 -4 6465 4526 2345 100 0 0 chr3 196326035 196326345 -21710813 - AluY SINE Alu 0 311 2 29592 102 8 25 chr3 196326345 196330833 -21706325 - L1PA7 LINE L1 -1943 4526 80 1183 143 44 28 chr3 196330833 196330991 -21706167 + MER44D DNA MER2_type 295 449 -2038 2301 125 0 0 chr3 196330991 196331303 -21705855 + AluSx SINE Alu 1 312 0 6158 127 83 46 chr3 196331309 196332277 -21704881 - Tigger3b DNA MER2_type -1798 1230 207 2066 125 0 0 chr3 196332277 196332564 -21704594 - AluSx SINE Alu -25 287 1 6158 127 83 46 chr3 196332564 196332780 -21704378 - Tigger3b DNA MER2_type -2821 207 1 1183 143 44 28 chr3 196332780 196332865 -21704293 + MER44D DNA MER2_type 453 604 -1 3381 127 7 34 chr3 196333272 196333809 -21703349 + MER1A DNA MER1_type 5 527 0 2231 99 0 0 chr3 196333897 196334179 -21702979 - AluSx SINE Alu -10 302 21 580 161 17 17 chr3 196334421 196334539 -21702619 - LTR47A LTR ERVL 0 452 335 284 122 0 41 chr3 196334540 196334589 -21702569 + Alu SINE Alu 1 47 -254 921 148 28 0 chr3 196334608 196334750 -21702408 + AluSc SINE Alu 161 306 -3 1311 196 43 55 chr3 196334752 196335098 -21702060 - LTR47A LTR ERVL -110 342 1 1707 239 79 54 chr3 196335103 196335212 -21701946 + MLT1E LTR MaLR 10 115 -478 4163 114 36 50 chr3 196335212 196335913 -21701245 - LTR8 LTR ERV1 0 691 1 1707 239 79 54 chr3 196335913 196336373 -21700785 + MLT1E LTR MaLR 115 593 0 2144 115 28 0 chr3 196336791 196337147 -21700011 + LTR24C LTR ERV1 1 366 -269 502 191 19 0 chr3 196337147 196337252 -21699906 + MSTC-int LTR MaLR 1629 1735 0 304 131 0 192 chr3 196337252 196337320 -21699838 + MSTC LTR MaLR 1 46 -382 6217 82 75 0 chr3 196337320 196338240 -21698918 - L1PB1 LINE L1 -2 6149 5221 304 131 0 192 chr3 196338240 196338270 -21698888 + MSTC LTR MaLR 46 80 -348 2462 93 0 0 chr3 196338270 196338571 -21698587 - AluSx SINE Alu -11 301 1 1584 249 67 44 chr3 196338572 196339556 -21697602 - L1MEc LINE L1 -3000 3215 2209 392 283 104 74 chr3 196339559 196340106 -21697052 - L1MEc LINE L1 -4031 2184 1640 462 347 90 26 chr3 196340160 196340471 -21696687 - L1MEc LINE L1 -5287 918 588 238 306 45 9 chr3 196341541 196341652 -21695506 - L2 LINE L2 -985 2329 2215 1957 132 0 4 chr3 196341705 196341986 -21695172 + AluSx SINE Alu 1 280 -32 216 0 0 0 chr3 196341988 196342012 -21695146 + (TAA)n Simple_repeat Simple_repeat 2 25 0 2151 90 0 24 chr3 196342274 196342586 -21694572 + AluSx SINE Alu 1 305 0 2001 108 3 28 chr3 196342666 196342953 -21694205 + AluSg SINE Alu 1 280 -30 2271 108 10 0 chr3 196343266 196343573 -21693585 - AluSg SINE Alu 0 310 1 21 57 0 0 chr3 196344166 196344201 -21692957 + AT_rich Low_complexity Low_complexity 1 35 0 1759 149 43 0 chr3 196345283 196345564 -21691594 - AluJo SINE Alu -19 293 1 3934 181 39 23 chr3 196347458 196348432 -21688726 - L1MB7 LINE L1 0 6420 5433 185 91 0 30 chr3 196348444 196348477 -21688681 + (TTCCC)n Simple_repeat Simple_repeat 3 34 0 1869 164 3 3 chr3 196348478 196348764 -21688394 - AluJb SINE Alu -26 286 1 3065 228 51 55 chr3 196348780 196350393 -21686765 - L1MB7 LINE L1 -3119 3263 1645 1777 160 43 27 chr3 196350393 196350693 -21686465 - AluJb SINE Alu -7 305 1 3065 228 51 55 chr3 196350693 196350729 -21686429 - L1MB7 LINE L1 -4737 1645 1610 950 65 14 0 chr3 196350729 196350867 -21686291 - L1MA9 LINE L1 0 6312 6173 3065 228 51 55 chr3 196350867 196350900 -21686258 - L1MB7 LINE L1 -4772 1610 1578 1501 116 5 204 chr3 196350900 196351287 -21685871 - AluJo SINE Alu 0 312 3 3065 228 51 55 chr3 196351287 196351407 -21685751 - L1MB7 LINE L1 -4804 1578 1478 1755 238 64 10 chr3 196351465 196352057 -21685101 - L1ME LINE L1 -3224 2856 2233 255 313 14 21 chr3 196352096 196352240 -21684918 - L1M4 LINE L1 -2259 3887 3745 236 273 49 73 chr3 196352304 196352509 -21684649 - L1M4 LINE L1 -2572 3574 3375 432 292 50 0 chr3 196352618 196352738 -21684420 + Charlie2 DNA MER1_type 216 341 -2521 408 289 16 37 chr3 196352749 196352936 -21684222 - HAL1 LINE L1 -1544 963 781 1820 144 56 14 chr3 196352986 196353346 -21683812 + THE1C LTR MaLR 1 375 0 2129 127 10 3 chr3 196353684 196353991 -21683167 + AluSx SINE Alu 1 309 -3 467 270 35 52 chr3 196354191 196354365 -21682793 + MER5A DNA MER1_type 16 186 -3 25 31 0 0 chr3 196354475 196354507 -21682651 + AT_rich Low_complexity Low_complexity 1 32 0 832 235 14 28 chr3 196354744 196354961 -21682197 - L1M4 LINE L1 -1281 4865 4652 622 158 9 18 chr3 196354960 196355074 -21682084 - L1MB4 LINE L1 -149 6031 5919 * 621 179 0 92 chr3 196355114 196355176 -21681982 - L1M4 LINE L1 -1485 4661 4595 1522 213 3 7 chr3 196355176 196355472 -21681686 + AluJo SINE Alu 5 299 -13 621 179 0 92 chr3 196355472 196355582 -21681576 - L1M4 LINE L1 -1551 4595 4505 * 793 248 53 7 chr3 196355579 196355878 -21681280 - L1ME LINE L1 -5183 887 575 2886 199 25 14 chr3 196355878 196356507 -21680651 - L1MB5 LINE L1 0 6174 5539 245 27 54 0 chr3 196356542 196356579 -21680579 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 873 251 94 25 chr3 196356586 196356949 -21680209 - L1ME LINE L1 -6141 401 14 784 286 21 25 chr3 196356963 196357243 -21679915 - L1ME LINE L1 -5490 580 302 1002 119 103 5 chr3 196357350 196357544 -21679614 - L1MB3 LINE L1 -8 6175 5963 2346 183 45 8 chr3 196357546 196358326 -21678832 - L1MB3 LINE L1 -471 5712 4903 1819 138 13 36 chr3 196358330 196358634 -21678524 - AluSx SINE Alu -15 297 1 1941 168 40 8 chr3 196358719 196359094 -21678064 - MLT1B LTR MaLR -1 389 3 1783 167 0 53 chr3 196359955 196360254 -21676904 + AluJb SINE Alu 1 283 -29 444 318 47 0 chr3 196361288 196361436 -21675722 + MIR3 SINE MIR 45 199 -9 675 197 28 21 chr3 196361524 196361666 -21675492 + L1M3c LINE L1 1 143 -5998 2349 158 46 0 chr3 196361674 196362085 -21675073 - MER57B LTR ERV1 -4 430 1 17180 136 98 57 chr3 196362085 196366407 -21670751 - MER57B-int LTR ERV1 0 7537 3267 1331 183 9 25 chr3 196366407 196366836 -21670322 - L1MD3 LINE L1 -83 7912 7406 39036 78 10 11 chr3 196366836 196372842 -21664316 - L1PA5 LINE L1 0 6154 11 350 250 12 0 chr3 196372873 196372957 -21664201 - MLT1F1 LTR MaLR -448 119 35 1255 174 122 7 chr3 196372957 196373251 -21663907 - L1MD3 LINE L1 -879 7116 6789 1791 157 7 20 chr3 196373535 196373835 -21663323 + AluJo SINE Alu 1 296 -16 347 286 91 40 chr3 196373912 196374164 -21662994 + MLT1L LTR MaLR 351 615 0 510 106 0 0 chr3 196374554 196374639 -21662519 + L1MA7 LINE L1 6205 6289 -2 1828 287 84 47 chr3 196374656 196374824 -21662334 + L1MEc LINE L1 34 194 -6202 2194 103 3 7 chr3 196374824 196375124 -21662034 - AluSx SINE Alu -13 299 1 1828 287 84 47 chr3 196375124 196375580 -21661578 + L1MEc LINE L1 194 631 -5765 2248 78 51 7 chr3 196375580 196375876 -21661282 + AluSx SINE Alu 1 309 -3 1828 287 84 47 chr3 196375876 196376257 -21660901 + L1MEc LINE L1 631 1078 -5318 994 231 106 76 chr3 196376257 196376664 -21660494 + L1MCc LINE L1 23 441 -5982 235 130 20 3 chr3 196376662 196376721 -21660437 - L1M4c LINE L1 -4920 1622 1575 * 180 0 0 0 chr3 196376721 196376741 -21660417 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2642 172 15 51 chr3 196377031 196377328 -21659830 - L1MB7 LINE L1 0 6184 5878 5452 63 33 9 chr3 196377328 196378076 -21659082 - MER4E LTR ERV1 0 766 1 2642 172 15 51 chr3 196378076 196378188 -21658970 - L1MB7 LINE L1 -306 5878 5764 3230 91 14 34 chr3 196378188 196378684 -21658474 + LTR19A LTR ERV1 1 486 0 2642 172 15 51 chr3 196378684 196378787 -21658371 - L1MB7 LINE L1 -420 5764 5696 1826 147 35 7 chr3 196378787 196379073 -21658085 - AluJb SINE Alu -18 294 1 2642 172 15 51 chr3 196379073 196379209 -21657949 - L1MB7 LINE L1 -488 5696 5557 1781 248 32 60 chr3 196379219 196379755 -21657403 + L1MCc LINE L1 313 833 -6006 244 215 123 0 chr3 196381183 196381248 -21655910 - MIR SINE MIR 0 262 190 209 241 19 19 chr3 196381271 196381325 -21655833 + MIR3 SINE MIR 144 197 -11 336 0 94 0 chr3 196386111 196386175 -21650983 + (TG)n Simple_repeat Simple_repeat 2 71 0 728 240 105 91 chr3 196387219 196387541 -21649617 - L1MC4a LINE L1 -1785 6023 5707 2095 119 0 3 chr3 196387541 196387834 -21649324 + AluSq SINE Alu 3 294 -19 3490 143 31 15 chr3 196387840 196388488 -21648670 + L1MB4 LINE L1 5522 6179 -1 728 240 105 91 chr3 196388488 196388728 -21648430 - L1MC4a LINE L1 -2105 5703 5446 795 140 2 65 chr3 196389646 196389809 -21647349 + L1M3 LINE L1 5602 5754 -410 294 261 68 34 chr3 196390056 196390144 -21647014 - L2 LINE L2 -14 3258 3168 700 308 20 24 chr3 196390328 196390578 -21646580 - MIR SINE MIR -11 251 3 2251 103 13 3 chr3 196391201 196391503 -21645655 + AluSx SINE Alu 1 305 -7 401 314 60 32 chr3 196392636 196392821 -21644337 - L3 LINE CR1 -88 1489 1300 246 306 9 56 chr3 196392865 196392973 -21644185 + L2 LINE L2 2694 2796 -518 2053 111 40 10 chr3 196392976 196393274 -21643884 - AluSx SINE Alu -5 307 1 1293 185 33 49 chr3 196393442 196393771 -21643387 + MER33 DNA MER1_type 1 324 0 313 271 6 10 chr3 196393965 196394063 -21643095 - Charlie8 DNA MER1_type -1001 1416 1350 502 319 69 30 chr3 196394112 196394344 -21642814 - Charlie8 DNA MER1_type -2175 242 2 27335 129 9 16 chr3 196395291 196401733 -21635425 - L1PA8A LINE L1 0 6446 1 287 280 0 32 chr3 196401863 196401956 -21635202 + MIR SINE MIR 81 170 -92 3408 120 34 25 chr3 196402350 196402909 -21634249 - MER34B LTR ERV1 -1 564 1 266 297 105 31 chr3 196403182 196403411 -21633747 - L2 LINE L2 -1024 2290 2045 220 306 51 31 chr3 196403749 196403847 -21633311 - MER5A DNA MER1_type -79 110 11 901 129 158 12 chr3 196404314 196404485 -21632673 + MSTA LTR MaLR 2 197 -231 2146 120 3 0 chr3 196404485 196404784 -21632374 + AluSq SINE Alu 1 300 -13 1479 85 5 0 chr3 196404807 196404996 -21632162 + AluSg/x SINE Alu 110 299 -13 517 179 15 37 chr3 196405328 196405462 -21631696 + LTR7 LTR ERV1 276 406 -44 207 0 0 0 chr3 196405476 196405499 -21631659 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 201 283 0 0 chr3 196406344 196406390 -21630768 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 745 147 0 0 chr3 196406543 196406682 -21630476 + AluSg/x SINE Alu 166 304 0 1055 146 87 10 chr3 196406682 196406888 -21630270 + L1MB1 LINE L1 5609 5830 -338 2501 77 0 3 chr3 196406888 196407198 -21629960 + AluSc SINE Alu 1 309 0 538 196 17 52 chr3 196407532 196407667 -21629491 + LTR7 LTR ERV1 276 405 -45 261 0 0 0 chr3 196407667 196407696 -21629462 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 538 196 17 52 chr3 196407696 196407733 -21629425 + LTR7 LTR ERV1 405 442 -8 311 237 158 22 chr3 196407735 196407874 -21629284 - HAL1 LINE L1 -112 2395 2238 400 277 13 7 chr3 196407882 196408037 -21629121 - HAL1 LINE L1 -310 2197 2042 1076 210 26 0 chr3 196408038 196408233 -21628925 + MER58A DNA MER1_type 24 223 -1 1395 273 77 17 chr3 196408292 196408981 -21628177 - L1MCc LINE L1 -3207 3734 3005 21 36 0 0 chr3 196409009 196409037 -21628121 + AT_rich Low_complexity Low_complexity 1 28 0 900 211 35 22 chr3 196409115 196409292 -21627866 - MLT1E LTR MaLR 0 593 411 2167 127 0 0 chr3 196409292 196409591 -21627567 - AluSg SINE Alu -11 299 1 900 211 35 22 chr3 196409591 196409640 -21627518 - MLT1E LTR MaLR -182 411 364 288 199 36 24 chr3 196409733 196409834 -21627324 - L1MCc LINE L1 -4961 1462 1384 239 329 26 0 chr3 196410625 196410701 -21626457 + MIR SINE MIR 36 113 -95 2159 148 24 8 chr3 196410723 196411100 -21626058 - L1MC1 LINE L1 -25 6308 5926 717 211 20 20 chr3 196411695 196411847 -21625311 - MER5A DNA MER1_type -12 177 26 1385 239 133 31 chr3 196413759 196414634 -21622524 - L2 LINE L2 -11 3302 2348 511 274 50 50 chr3 196414581 196414760 -21622398 + MIR SINE MIR 12 190 -72 * 21 57 0 0 chr3 196415032 196415067 -21622091 + AT_rich Low_complexity Low_complexity 1 35 0 5851 120 8 30 chr3 196416407 196418348 -21618810 - L1PA15 LINE L1 -3 6162 4226 2272 83 0 17 chr3 196419339 196419640 -21617518 + AluY SINE Alu 1 296 -15 226 325 78 32 chr3 196419696 196419850 -21617308 + MIR3 SINE MIR 45 205 -3 820 252 63 67 chr3 196419914 196420355 -21616803 - L1MEc LINE L1 -3488 2727 2287 1240 227 10 70 chr3 196420355 196420743 -21616415 - MLT1A1 LTR MaLR 0 365 1 820 252 63 67 chr3 196420743 196420824 -21616334 - L1MEc LINE L1 -3928 2287 2207 340 289 61 76 chr3 196420833 196421110 -21616048 - L1MEc LINE L1 -4165 2231 1959 237 234 93 37 chr3 196421225 196421332 -21615826 - L1MEc LINE L1 -4701 1695 1583 292 258 117 0 chr3 196421515 196421643 -21615515 - MER103 DNA DNA -23 143 1 198 0 0 0 chr3 196421791 196421813 -21615345 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 548 241 0 0 chr3 196423046 196423158 -21614000 - MER94 DNA DNA -21 113 2 511 231 0 9 chr3 196423311 196423419 -21613739 + MER5B DNA MER1_type 72 178 0 931 228 16 15 chr3 196423895 196424196 -21612962 - MLT1A1 LTR MaLR -2 363 11 825 220 28 0 chr3 196425101 196425278 -21611880 + MER5A DNA MER1_type 1 182 -7 241 159 23 0 chr3 196425844 196425888 -21611270 - L2 LINE L2 -78 3235 3191 277 278 0 42 chr3 196428087 196428159 -21608999 - MIR3 SINE MIR -2 206 138 1563 184 0 43 chr3 196428384 196428710 -21608448 - AluJo SINE Alu 0 312 1 2384 47 0 0 chr3 196428722 196429001 -21608157 - AluY SINE Alu -5 306 28 21 57 0 0 chr3 196429968 196430003 -21607155 + AT_rich Low_complexity Low_complexity 1 35 0 194 402 26 0 chr3 196431060 196431177 -21605981 + L2 LINE L2 2247 2366 -948 377 282 84 0 chr3 196431386 196431517 -21605641 + L2 LINE L2 3167 3308 -5 1883 145 20 10 chr3 196432796 196433099 -21604059 + AluSx SINE Alu 1 306 -6 1466 205 40 51 chr3 196433178 196433553 -21603605 + MLT1A2 LTR MaLR 4 374 0 968 238 30 8 chr3 196433583 196433818 -21603340 + MIR SINE MIR 22 261 -1 2324 100 3 16 chr3 196434442 196434751 -21602407 + AluSx SINE Alu 1 305 -7 518 330 53 19 chr3 196434920 196435129 -21602029 + L2 LINE L2 2259 2474 -840 29 47 0 0 chr3 196435129 196435172 -21601986 + AT_rich Low_complexity Low_complexity 1 43 0 264 255 78 49 chr3 196436545 196436647 -21600511 + L2 LINE L2 3168 3272 0 1123 334 94 9 chr3 196436664 196437239 -21599919 + L2 LINE L2 2227 2850 -464 274 286 162 45 chr3 196437360 196437514 -21599644 + L2 LINE L2 3123 3294 -19 1883 152 3 7 chr3 196437637 196437939 -21599219 + AluJo SINE Alu 1 301 -11 346 320 73 11 chr3 196438744 196438922 -21598236 - L1ME4a LINE L1 -238 5883 5695 1671 91 0 28 chr3 196439034 196439287 -21597871 - L1MA5A LINE L1 -5 6292 6047 1882 177 68 15 chr3 196439699 196440095 -21597063 - MLT1C LTR MaLR 0 467 51 570 303 63 17 chr3 196440188 196440426 -21596732 + MIR SINE MIR 8 256 -6 2198 96 0 13 chr3 196440443 196440744 -21596414 + AluY SINE Alu 1 297 -14 2506 73 0 16 chr3 196442086 196442402 -21594756 + AluY SINE Alu 1 311 0 3948 73 0 0 chr3 196442402 196442936 -21594222 + L1P LINE L1 4237 4770 -1376 1558 124 4 4 chr3 196443036 196443261 -21593897 + AluSg/x SINE Alu 71 295 -15 1000 246 54 31 chr3 196443267 196443584 -21593574 - HsTC2b DNA Tc2 -552 363 40 261 0 0 0 chr3 196444365 196444394 -21592764 + (TA)n Simple_repeat Simple_repeat 2 30 0 468 308 134 64 chr3 196445871 196446641 -21590517 - L1ME4a LINE L1 -1007 5139 4316 1936 102 63 0 chr3 196446807 196447091 -21590067 - AluSp SINE Alu -11 302 1 2160 95 7 3 chr3 196447869 196448164 -21588994 + AluSg SINE Alu 1 296 -14 2020 113 34 7 chr3 196448641 196448934 -21588224 + AluSx SINE Alu 3 303 -9 2116 130 0 0 chr3 196449104 196449405 -21587753 - AluSq SINE Alu -12 301 1 197 286 0 0 chr3 196449573 196449622 -21587536 + L2 LINE L2 3254 3302 -11 1518 180 15 7 chr3 196449626 196449898 -21587260 - AluJb SINE Alu -9 303 30 325 233 45 125 chr3 196449929 196450105 -21587053 - HAL1 LINE L1 -2321 186 25 331 302 249 21 chr3 196450710 196450899 -21586259 - MIR SINE MIR -17 245 14 329 343 19 9 chr3 196451018 196451126 -21586032 - MIR SINE MIR -134 128 20 2066 117 7 7 chr3 196451715 196452015 -21585143 + AluSq SINE Alu 1 300 -13 1479 85 5 0 chr3 196452038 196452227 -21584931 + AluSg/x SINE Alu 110 299 -13 517 179 15 37 chr3 196452560 196452694 -21584464 + LTR7 LTR ERV1 276 406 -44 207 0 0 0 chr3 196452708 196452731 -21584427 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 201 283 0 0 chr3 196453576 196453622 -21583536 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 744 147 0 0 chr3 196453775 196453914 -21583244 + AluSg/x SINE Alu 168 283 -29 1055 146 87 10 chr3 196453914 196454120 -21583038 + L1MB1 LINE L1 5609 5830 -338 2501 77 0 3 chr3 196454120 196454430 -21582728 + AluSc SINE Alu 1 309 0 538 196 17 52 chr3 196454764 196454899 -21582259 + LTR7 LTR ERV1 276 405 -45 261 0 0 0 chr3 196454899 196454928 -21582230 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 538 196 17 52 chr3 196454928 196454965 -21582193 + LTR7 LTR ERV1 405 442 -8 311 237 158 22 chr3 196454967 196455106 -21582052 - HAL1 LINE L1 -112 2395 2238 399 284 13 7 chr3 196455114 196455269 -21581889 - HAL1 LINE L1 -310 2197 2042 1076 210 26 0 chr3 196455270 196455465 -21581693 + MER58A DNA MER1_type 24 223 -1 1395 273 77 17 chr3 196455524 196456213 -21580945 - L1MCc LINE L1 -3207 3734 3005 21 36 0 0 chr3 196456241 196456269 -21580889 + AT_rich Low_complexity Low_complexity 1 28 0 900 211 35 22 chr3 196456347 196456524 -21580634 - MLT1E LTR MaLR 0 593 411 2167 127 0 0 chr3 196456524 196456823 -21580335 - AluSg SINE Alu -11 299 1 900 211 35 22 chr3 196456823 196456872 -21580286 - MLT1E LTR MaLR -182 411 364 288 199 36 24 chr3 196456965 196457066 -21580092 - L1MCc LINE L1 -4961 1462 1384 239 329 26 0 chr3 196457857 196457933 -21579225 + MIR SINE MIR 36 113 -95 2159 148 24 8 chr3 196457955 196458332 -21578826 - L1MC1 LINE L1 -25 6308 5926 717 211 20 20 chr3 196458927 196459079 -21578079 - MER5A DNA MER1_type -12 177 26 473 208 39 71 chr3 196460991 196461145 -21576013 - L2 LINE L2 -11 3302 3154 2248 103 6 0 chr3 196511162 196511503 -21525655 - L1PA8 LINE L1 -140 6032 5690 1153 84 6 2 chr3 196511521 196511700 -21525458 - L1PA8A LINE L1 -283 5848 5672 613 286 49 15 chr3 196511700 196511903 -21525255 + MIR SINE MIR 40 249 -13 1382 202 22 19 chr3 196512164 196512481 -21524677 - AluYb8 SINE Alu 0 318 1 21 0 0 0 chr3 196512576 196512597 -21524561 + AT_rich Low_complexity Low_complexity 1 21 0 237 386 14 14 chr3 196512777 196512917 -21524241 + L2 LINE L2 2702 2841 -473 * 402 259 0 0 chr3 196512894 196512979 -21524179 + L2 LINE L2 3229 3313 0 213 94 0 0 chr3 196513312 196513344 -21523814 + (ATG)n Simple_repeat Simple_repeat 2 33 0 648 288 76 25 chr3 196513349 196513547 -21523611 - MIR SINE MIR -9 253 46 218 189 0 0 chr3 196513859 196513896 -21523262 + GA-rich Low_complexity Low_complexity 2 38 0 432 191 0 85 chr3 196514141 196514235 -21522923 - MIR SINE MIR -64 144 59 27 0 0 0 chr3 196514251 196514278 -21522880 + AT_rich Low_complexity Low_complexity 1 27 0 60 64 0 0 chr3 196514386 196514495 -21522663 + AT_rich Low_complexity Low_complexity 1 109 0 341 272 29 73 chr3 196516439 196516575 -21520583 - MIR SINE MIR -44 218 89 1160 49 0 0 chr3 196516835 196516977 -21520181 + L1MA1 LINE L1 6155 6296 -6 25 31 0 0 chr3 196516979 196517011 -21520147 + AT_rich Low_complexity Low_complexity 1 32 0 846 188 0 0 chr3 196517677 196517847 -21519311 + GA-rich Low_complexity Low_complexity 1 170 0 32 0 0 0 chr3 196517993 196518025 -21519133 + AT_rich Low_complexity Low_complexity 1 32 0 400 252 384 0 chr3 196518751 196518910 -21518248 - MIR SINE MIR -37 225 6 270 0 0 0 chr3 196520001 196520031 -21517127 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 447 285 49 24 chr3 196520088 196520211 -21516947 + L2 LINE L2 3138 3263 -9 673 181 57 51 chr3 196521324 196521501 -21515657 - MER20 DNA MER1_type 0 219 42 402 318 88 29 chr3 196522427 196522597 -21514561 - MER5A DNA MER1_type -6 183 4 326 104 149 0 chr3 196522918 196522985 -21514173 - L1PA16 LINE L1 -5 6161 6085 198 0 0 0 chr3 196523274 196523296 -21513862 + (A)n Simple_repeat Simple_repeat 1 22 0 23 33 0 0 chr3 196523556 196523586 -21513572 + AT_rich Low_complexity Low_complexity 1 30 0 327 231 63 28 chr3 196524597 196524740 -21512418 - MER69 DNA AcHobo -22 2504 2357 286 246 18 0 chr3 196524754 196524811 -21512347 - MER69 DNA AcHobo -1130 96 39 22 0 0 0 chr3 196524960 196524982 -21512176 + AT_rich Low_complexity Low_complexity 1 22 0 2159 70 0 63 chr3 196524985 196525313 -21511845 + AluY SINE Alu 1 309 0 338 274 69 89 chr3 196525997 196526248 -21510910 - MIR SINE MIR 0 262 22 192 228 169 96 chr3 196526392 196526528 -21510630 + MIR SINE MIR 51 196 -66 543 246 126 11 chr3 196527291 196527504 -21509654 - MIR SINE MIR -12 250 14 2303 81 7 3 chr3 196527960 196528269 -21508889 - AluY SINE Alu 0 311 2 421 319 21 0 chr3 196529670 196529814 -21507344 + MIR3 SINE MIR 47 193 -15 281 45 0 45 chr3 196530021 196530065 -21507093 + (TTCCC)n Simple_repeat Simple_repeat 3 44 0 1524 143 0 0 chr3 196530067 196530277 -21506881 - AluSg/x SINE Alu -20 292 83 218 157 39 0 chr3 196531133 196531184 -21505974 + T-rich Low_complexity Low_complexity 2 54 0 351 327 39 6 chr3 196533988 196534144 -21503014 - MIR SINE MIR -2 260 100 825 211 11 53 chr3 196534148 196534338 -21502820 + MIR SINE MIR 2 183 -79 494 223 74 79 chr3 196534521 196534952 -21502206 - L1ME4a LINE L1 -215 5906 5478 24 0 0 0 chr3 196535039 196535063 -21502095 + AT_rich Low_complexity Low_complexity 1 24 0 2071 181 18 8 chr3 196535268 196535660 -21501498 - MSTD LTR MaLR 0 396 1 21 0 0 0 chr3 196535672 196535693 -21501465 + AT_rich Low_complexity Low_complexity 1 21 0 235 336 33 25 chr3 196535693 196535815 -21501343 + L2 LINE L2 2736 2858 -456 922 229 0 0 chr3 196535816 196535995 -21501163 - MER63A DNA MER1_type -31 179 1 225 108 0 0 chr3 196536609 196536646 -21500512 + (GA)n Simple_repeat Simple_repeat 2 38 0 1463 196 0 0 chr3 196536726 196536971 -21500187 + AluJo SINE Alu 34 278 -34 322 320 20 34 chr3 196537197 196537344 -21499814 + MIR SINE MIR 49 193 -69 2006 100 0 81 chr3 196537514 196537834 -21499324 - AluSq SINE Alu -18 295 2 364 270 84 75 chr3 196538686 196538912 -21498246 + Charlie8 DNA MER1_type 170 397 -2020 2031 181 105 28 chr3 196539028 196539598 -21497560 - pTR5 LTR ERV1 -1087 1351 738 562 332 34 15 chr3 196539999 196540264 -21496894 - L2 LINE L2 -1359 1955 1686 1443 205 40 13 chr3 196540369 196540745 -21496413 + MER88 LTR ERVL 79 464 0 213 227 0 0 chr3 196541233 196541277 -21495881 - L2 LINE L2 -5 3308 3265 309 322 69 20 chr3 196541396 196541598 -21495560 - L2 LINE L2 -1304 2010 1799 227 324 98 59 chr3 196541955 196542211 -21494947 - L2 LINE L2 -1213 2101 1836 328 263 235 6 chr3 196542570 196542749 -21494409 - MIR SINE MIR -12 250 31 186 333 45 26 chr3 196542819 196542975 -21494183 - L2 LINE L2 -1866 1448 1290 1322 174 28 50 chr3 196543079 196543400 -21493758 - MER58B DNA MER1_type 0 341 28 297 330 11 0 chr3 196543405 196543499 -21493659 + MER5A DNA MER1_type 56 150 -39 198 247 178 0 chr3 196544261 196544334 -21492824 - MIR SINE MIR -59 203 118 2244 88 13 13 chr3 196544400 196544707 -21492451 + AluY SINE Alu 1 307 -4 23 68 0 0 chr3 196544784 196544828 -21492330 + AT_rich Low_complexity Low_complexity 1 44 0 350 268 158 8 chr3 196545119 196545246 -21491912 - MIR SINE MIR -111 151 6 465 319 112 73 chr3 196548152 196549092 -21488066 - L2 LINE L2 0 3272 2328 309 26 0 0 chr3 196549129 196549167 -21487991 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2307 99 0 0 chr3 196549173 196549467 -21487691 - AluSx SINE Alu -18 294 1 471 65 0 0 chr3 196550653 196550715 -21486443 + L1PA4 LINE L1 6080 6141 -14 29 0 0 0 chr3 196551028 196551057 -21486101 + AT_rich Low_complexity Low_complexity 1 29 0 2080 128 0 0 chr3 196551057 196551346 -21485812 - AluSx SINE Alu -23 289 1 483 306 16 0 chr3 196551548 196551669 -21485489 + MIR SINE MIR 26 148 -114 6322 97 12 8 chr3 196552870 196554286 -21482872 + L1PA11 LINE L1 4749 6173 -1 30 0 0 0 chr3 196554502 196554532 -21482626 + AT_rich Low_complexity Low_complexity 1 30 0 1764 146 58 47 chr3 196554532 196554862 -21482296 - MSTA LTR MaLR -60 368 32 2320 98 3 0 chr3 196554862 196555157 -21482001 + AluSx SINE Alu 2 297 -15 1764 146 58 47 chr3 196555157 196555190 -21481968 - MSTA LTR MaLR -396 32 1 8243 180 29 27 chr3 196555190 196556838 -21480320 - MSTA-int LTR MaLR 0 1651 1 1445 143 0 0 chr3 196556838 196557055 -21480103 - MSTA LTR MaLR 0 428 212 1693 98 8 21 chr3 196557223 196557457 -21479701 - AluY SINE Alu -80 231 1 207 0 0 0 chr3 196557457 196557480 -21479678 + (T)n Simple_repeat Simple_repeat 1 23 0 444 311 44 6 chr3 196565675 196565855 -21471303 + L1ME4a LINE L1 5498 5684 -437 685 238 108 39 chr3 196565928 196566159 -21470999 + MIR SINE MIR 13 259 -3 326 251 114 18 chr3 196566194 196566361 -21470797 + L1ME4a LINE L1 5767 5949 -172 27 62 0 0 chr3 196566422 196566470 -21470688 + AT_rich Low_complexity Low_complexity 1 48 0 2296 88 3 0 chr3 196566470 196566755 -21470403 - AluSp SINE Alu -27 286 1 3447 144 14 0 chr3 196567828 196568399 -21468759 + L1MB3 LINE L1 5605 6183 0 328 336 19 0 chr3 196568470 196568574 -21468584 + GA-rich Low_complexity Low_complexity 4 109 0 428 319 38 31 chr3 196568574 196568734 -21468424 + MER91A DNA MER1_type 2 162 -34 206 265 61 0 chr3 196568734 196568783 -21468375 + MER91A DNA MER1_type 128 179 -17 391 43 0 0 chr3 196568830 196568877 -21468281 + AluY SINE Alu 11 57 -246 351 310 7 26 chr3 196568891 196569046 -21468112 - MER112 DNA MER1_type -99 161 10 2432 86 0 10 chr3 196569271 196569585 -21467573 + AluSq SINE Alu 1 311 -2 437 335 66 33 chr3 196569702 196569914 -21467244 + MIR SINE MIR 28 246 -16 206 266 57 65 chr3 196570113 196570237 -21466921 + L2 LINE L2 3097 3219 -94 308 141 203 0 chr3 196570528 196570592 -21466566 - LTR40a LTR ERVL 0 519 443 390 281 73 81 chr3 196571373 196571633 -21465525 + L2 LINE L2 2446 2703 -611 7902 240 44 33 chr3 196571633 196572852 -21464306 + L1MB1 LINE L1 1 1204 -4766 1530 230 36 14 chr3 196572852 196573209 -21463949 + MLT1A1 LTR MaLR 1 365 0 7902 240 44 33 chr3 196573209 196575307 -21461851 + L1MB1 LINE L1 1204 3276 -2694 1710 108 73 92 chr3 196575307 196575621 -21461537 - AluSg SINE Alu 0 310 3 7902 240 44 33 chr3 196575621 196576445 -21460713 + L1MB1 LINE L1 3276 3882 -2088 207 0 0 0 chr3 196576445 196576468 -21460690 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7902 240 44 33 chr3 196576468 196576647 -21460511 + L1MB1 LINE L1 3882 4057 -1913 378 115 0 0 chr3 196576651 196576712 -21460446 + (GA)n Simple_repeat Simple_repeat 1 61 0 2173 157 101 3 chr3 196576737 196577125 -21460033 + MSTB LTR MaLR 1 426 0 378 240 0 0 chr3 196577126 196577201 -21459957 - Tigger5 DNA MER2_type -7 2316 2242 * 381 247 0 0 chr3 196577194 196577267 -21459891 + Tigger5 DNA MER2_type 2245 2317 -6 381 231 0 13 chr3 196577270 196577348 -21459810 - Tigger5 DNA MER2_type -2245 78 2 2788 117 51 31 chr3 196577395 196577909 -21459249 + L1MA9 LINE L1 5782 6305 -7 2707 198 12 38 chr3 196577916 196578176 -21458982 + L1MB1 LINE L1 4586 4851 -1141 2362 45 0 0 chr3 196578176 196578462 -21458696 + L1PA5 LINE L1 5863 6151 -3 2707 198 12 38 chr3 196578462 196578879 -21458279 + L1MB1 LINE L1 4851 5248 -744 7039 33 0 0 chr3 196578879 196579717 -21457441 - L1PA4 LINE L1 -1309 4837 4000 7701 21 1 1 chr3 196579717 196581033 -21456125 + L1PA4 LINE L1 4839 6154 -1 2928 168 50 45 chr3 196581038 196581233 -21455925 + L1MB1 LINE L1 5243 5436 -556 2135 117 0 0 chr3 196581233 196581539 -21455619 + AluSx SINE Alu 1 306 0 2928 168 50 45 chr3 196581539 196581744 -21455414 + L1MB1 LINE L1 5436 5639 -353 2209 110 3 10 chr3 196581744 196582054 -21455104 + AluSc SINE Alu 1 308 -1 2928 168 50 45 chr3 196582054 196582312 -21454846 + L1MB1 LINE L1 5639 5906 -86 1361 234 60 66 chr3 196582420 196582465 -21454693 - MLT1D LTR MaLR -24 481 437 769 178 0 15 chr3 196582465 196582600 -21454558 + FLAM_C SINE Alu 1 133 0 1361 234 60 66 chr3 196582600 196583038 -21454120 - MLT1D LTR MaLR -68 437 1 779 297 20 0 chr3 196583822 196584017 -21453141 + MIR SINE MIR 12 210 -52 506 294 14 21 chr3 196584013 196584156 -21453002 - L2 LINE L2 -4 3309 3168 * 2999 193 42 27 chr3 196584262 196584931 -21452227 - L1ME1 LINE L1 -18 6148 5470 204 149 0 0 chr3 196584940 196584987 -21452171 + (T)n Simple_repeat Simple_repeat 1 47 0 3569 17 0 0 chr3 196584988 196585401 -21451757 - L1PA2 LINE L1 -3 6152 5740 254 173 0 19 chr3 196585501 196585553 -21451605 + L1M3 LINE L1 5637 5687 -647 1165 169 48 5 chr3 196585577 196585784 -21451374 - AluJo SINE Alu -19 293 78 402 194 48 48 chr3 196586013 196586137 -21451021 - HAL1 LINE L1 0 2507 2384 1333 269 144 22 chr3 196586137 196586832 -21450326 - HAL1 LINE L1 -334 2173 1394 663 285 160 24 chr3 196586959 196587332 -21449826 - HAL1 LINE L1 -1293 1214 744 261 57 0 0 chr3 196587332 196587367 -21449791 + (TG)n Simple_repeat Simple_repeat 2 36 0 663 285 160 24 chr3 196587367 196587530 -21449628 - HAL1 LINE L1 -1763 744 605 6045 201 47 20 chr3 196587558 196588971 -21448187 + Charlie1a DNA MER1_type 5 1455 0 599 219 36 42 chr3 196589202 196589394 -21447764 - HAL1 LINE L1 -2290 217 27 43 56 0 0 chr3 196589460 196589531 -21447627 + AT_rich Low_complexity Low_complexity 1 71 0 577 301 44 35 chr3 196590238 196590441 -21446717 - MIR3 SINE MIR -3 205 1 505 21 11 63 chr3 196590514 196590609 -21446549 + (TTTA)n Simple_repeat Simple_repeat 3 92 0 22 35 0 0 chr3 196591554 196591583 -21445575 + AT_rich Low_complexity Low_complexity 1 29 0 307 209 82 45 chr3 196591583 196591693 -21445465 - MIR SINE MIR 0 262 149 191 293 217 6 chr3 196592356 196592513 -21444645 + MIR SINE MIR 69 258 -4 213 404 50 0 chr3 196593230 196593329 -21443829 + L2 LINE L2 3161 3264 -8 47 19 0 0 chr3 196594309 196594363 -21442795 + AT_rich Low_complexity Low_complexity 1 54 0 21 0 0 0 chr3 196594386 196594407 -21442751 + AT_rich Low_complexity Low_complexity 1 21 0 1992 115 11 65 chr3 196594473 196594829 -21442329 + MER1B DNA MER1_type 1 337 0 23 33 0 0 chr3 196595079 196595109 -21442049 + AT_rich Low_complexity Low_complexity 1 30 0 1237 164 11 76 chr3 196595405 196595668 -21441490 + MLT1B LTR MaLR 142 387 -3 573 326 98 34 chr3 196595672 196595997 -21441161 - L3 LINE CR1 -99 1478 1133 25 31 0 0 chr3 196596356 196596388 -21440770 + AT_rich Low_complexity Low_complexity 1 32 0 244 178 0 0 chr3 196596440 196596485 -21440673 - L2 LINE L2 -2 3311 3267 2243 105 7 0 chr3 196596631 196596927 -21440231 - AluSx SINE Alu -14 298 1 644 182 175 0 chr3 196597444 196597598 -21439560 + MER5A DNA MER1_type 9 189 0 2239 199 37 39 chr3 196597618 196597861 -21439297 + MER119 DNA MER1_type 76 318 -265 2180 123 0 13 chr3 196597861 196598163 -21438995 + AluSx SINE Alu 1 298 -14 2239 199 37 39 chr3 196598163 196598427 -21438731 + MER119 DNA MER1_type 318 582 -1 251 235 12 35 chr3 196598896 196598981 -21438177 - MIR SINE MIR 0 262 180 825 266 112 53 chr3 196598984 196599662 -21437496 - L2 LINE L2 0 3313 2521 383 250 33 11 chr3 196599655 196599747 -21437411 - MIR SINE MIR -148 114 21 * 1709 65 26 0 chr3 196599788 196600018 -21437140 + L1PA7 LINE L1 5919 6154 0 278 345 90 17 chr3 196600040 196600217 -21436941 + L3 LINE CR1 1386 1575 -2 183 80 0 0 chr3 196601310 196601335 -21435823 + (TG)n Simple_repeat Simple_repeat 2 26 0 2070 221 52 22 chr3 196603733 196604285 -21432873 + L1MD3 LINE L1 7404 7972 -23 192 322 0 17 chr3 196605163 196605222 -21431936 - L2 LINE L2 -19 3294 3237 304 231 112 52 chr3 196605945 196606079 -21431079 + MIR SINE MIR 18 159 -103 273 335 160 37 chr3 196606153 196606717 -21430441 - L2 LINE L2 -559 2755 2123 320 325 107 86 chr3 196607118 196607503 -21429655 + L2 LINE L2 2872 3264 -8 2065 171 34 23 chr3 196608800 196609018 -21428140 + MLT1B LTR MaLR 1 226 -164 1312 155 39 140 chr3 196609018 196609424 -21427734 + MLT1A1 LTR MaLR 1 365 0 2065 171 34 23 chr3 196609424 196609591 -21427567 + MLT1B LTR MaLR 226 390 0 2495 75 0 3 chr3 196610629 196610937 -21426221 + AluSq SINE Alu 1 307 -6 23 0 0 0 chr3 196611091 196611114 -21426044 + AT_rich Low_complexity Low_complexity 1 23 0 567 290 52 5 chr3 196612718 196612911 -21424247 - MIR SINE MIR -23 239 38 276 185 37 62 chr3 196612983 196613064 -21424094 + MIR SINE MIR 183 261 -1 251 204 0 0 chr3 196613258 196613307 -21423851 + L2 LINE L2 3258 3306 -7 227 256 33 0 chr3 196613378 196613468 -21423690 - L1MC4 LINE L1 -1336 6706 6614 315 193 59 8 chr3 196613471 196613612 -21423546 + (TA)n Simple_repeat Simple_repeat 1 148 0 213 109 0 65 chr3 196613820 196613866 -21423292 + (CTATT)n Simple_repeat Simple_repeat 3 45 0 307 296 144 15 chr3 196616285 196616417 -21420741 + MIR3 SINE MIR 3 151 -57 814 214 91 5 chr3 196616784 196617004 -21420154 - L1M3c LINE L1 -4528 2191 1953 361 204 71 20 chr3 196617023 196617141 -21420017 - L1M3c LINE L1 -4913 1806 1685 2215 82 14 0 chr3 196617643 196617936 -21419222 + AluY SINE Alu 4 300 -11 825 200 0 0 chr3 196617941 196618071 -21419087 - MER5A DNA MER1_type -59 130 1 508 238 179 13 chr3 196618245 196618396 -21418762 - MER5A DNA MER1_type 0 189 14 467 203 125 47 chr3 196618552 196618680 -21418478 - L2 LINE L2 0 3313 3176 273 286 0 0 chr3 196619304 196619388 -21417770 + A-rich Low_complexity Low_complexity 1 84 0 672 275 77 26 chr3 196622202 196622435 -21414723 - MIR SINE MIR -10 252 8 2510 62 0 0 chr3 196622463 196622771 -21414387 - AluY SINE Alu -3 308 1 200 237 186 0 chr3 196622858 196622917 -21414241 - L2 LINE L2 0 3272 3203 321 253 143 58 chr3 196623557 196623711 -21413447 + MIR SINE MIR 90 256 -6 1059 112 0 0 chr3 196625894 196626073 -21411085 + (CA)n Simple_repeat Simple_repeat 2 180 0 368 300 6 19 chr3 196626219 196626379 -21410779 + CT-rich Low_complexity Low_complexity 2 159 0 31013 103 10 26 chr3 196626718 196632894 -21404264 - L1PA7 LINE L1 0 6469 267 253 248 20 107 chr3 196632986 196633135 -21404023 - L2 LINE L2 -11 3302 3167 336 261 90 9 chr3 196634028 196634139 -21403019 + L2 LINE L2 3151 3270 -2 541 288 109 16 chr3 196637487 196637904 -21399254 - L1MC/D LINE L1 -605 5754 5270 672 257 218 5 chr3 196638631 196638837 -21398321 + MIR SINE MIR 13 262 0 414 335 57 0 chr3 196639949 196640125 -21397033 + L1ME LINE L1 5419 5604 -517 23 33 0 0 chr3 196640610 196640640 -21396518 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 196641126 196641147 -21396011 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr3 196641432 196641461 -21395697 + AT_rich Low_complexity Low_complexity 1 29 0 21 82 0 0 chr3 196641689 196641738 -21395420 + AT_rich Low_complexity Low_complexity 1 49 0 417 322 29 0 chr3 196641806 196641980 -21395178 + L1ME LINE L1 5594 5772 -349 526 261 0 8 chr3 196642361 196642480 -21394678 + L2 LINE L2 3196 3313 0 207 273 36 0 chr3 196643222 196643277 -21393881 + L2 LINE L2 3213 3269 -3 293 257 69 52 chr3 196643312 196643419 -21393739 + MIR SINE MIR 16 121 -87 737 261 20 25 chr3 196643463 196643666 -21393492 + MIR SINE MIR 59 260 -2 1283 200 0 0 chr3 196643666 196643901 -21393257 + L1PA16 LINE L1 5910 6144 -22 3490 128 4 6 chr3 196644414 196644963 -21392195 + L1MC1 LINE L1 5786 6333 0 180 277 169 12 chr3 196645031 196645114 -21392044 + MIR SINE MIR 159 254 -8 1669 145 18 132 chr3 196645156 196645549 -21391609 + MER7A DNA MER2_type 1 346 0 311 197 0 15 chr3 196645870 196645936 -21391222 - MIR SINE MIR -69 139 75 26 30 0 0 chr3 196646925 196646958 -21390200 + AT_rich Low_complexity Low_complexity 1 33 0 2171 159 94 40 chr3 196647987 196648466 -21388692 + MLT1D LTR MaLR 1 505 0 215 252 59 0 chr3 196648490 196648581 -21388577 + MIR SINE MIR 105 203 -59 2123 126 0 7 chr3 196648725 196649026 -21388132 + AluSx SINE Alu 1 299 -13 2454 59 0 10 chr3 196649076 196649383 -21387775 + AluY SINE Alu 1 304 -7 234 275 63 28 chr3 196649617 196649759 -21387399 + L1ME4a LINE L1 5688 5834 -1974 274 229 35 90 chr3 196649837 196649941 -21387217 + L1ME4a LINE L1 5976 6071 -50 1883 157 3 40 chr3 196649941 196650265 -21386893 - AluJb SINE Alu 0 312 1 274 229 35 90 chr3 196650265 196650304 -21386854 + L1ME4a LINE L1 6071 6111 -10 370 211 174 37 chr3 196650366 196650475 -21386683 + FLAM_C SINE Alu 8 131 -2 254 323 104 27 chr3 196650551 196650771 -21386387 - L2 LINE L2 -2 3311 3075 324 398 40 6 chr3 196651883 196652059 -21385099 - L3 LINE CR1 -375 1202 1021 328 265 0 0 chr3 196652501 196652569 -21384589 - L2 LINE L2 -17 3296 3229 * 570 272 26 10 chr3 196652568 196652763 -21384395 + L2 LINE L2 2694 2891 -423 188 371 14 0 chr3 196652820 196652890 -21384268 - MIR SINE MIR -15 247 177 2430 60 0 0 chr3 196652932 196653261 -21383897 - AluY SINE Alu 0 329 1 2368 128 65 54 chr3 196653317 196653746 -21383412 + Tigger2a DNA MER2_type 1 434 0 1568 178 10 33 chr3 196653925 196654228 -21382930 - AluJo SINE Alu -16 296 1 562 317 172 39 chr3 196654565 196654645 -21382513 + L2 LINE L2 2108 2176 -1137 2243 103 3 3 chr3 196654645 196654969 -21382189 - AluSx SINE Alu 0 312 1 562 317 172 39 chr3 196654969 196655945 -21381213 + L2 LINE L2 2176 3311 -2 355 245 101 64 chr3 196656044 196656232 -21380926 + L1M4c LINE L1 2306 2500 -3884 4394 87 8 0 chr3 196656354 196656961 -21380197 + L1PA13 LINE L1 5551 6162 -1 21 0 0 0 chr3 196657308 196657329 -21379829 + AT_rich Low_complexity Low_complexity 1 21 0 2058 95 54 3 chr3 196657386 196657680 -21379478 + AluSg1 SINE Alu 1 309 0 228 307 53 0 chr3 196657713 196657827 -21379331 + L1M4c LINE L1 3179 3298 -3084 2078 129 0 16 chr3 196657848 196658166 -21378992 + AluSq SINE Alu 1 313 0 22 80 0 0 chr3 196658406 196658456 -21378702 + AT_rich Low_complexity Low_complexity 1 50 0 458 272 38 13 chr3 196659146 196659304 -21377854 + MIR SINE MIR 46 207 -55 322 292 34 0 chr3 196659520 196659609 -21377549 - MIR3 SINE MIR -111 97 6 224 294 176 47 chr3 196660482 196660652 -21376506 - MIR SINE MIR -66 196 5 364 247 48 34 chr3 196661479 196661625 -21375533 - MIR SINE MIR -54 208 61 230 271 0 0 chr3 196661938 196661997 -21375161 + (TA)n Simple_repeat Simple_repeat 2 60 0 180 77 0 0 chr3 196662049 196662075 -21375083 + (TG)n Simple_repeat Simple_repeat 1 26 0 261 363 99 42 chr3 196662262 196662901 -21374257 + L2 LINE L2 2160 2834 -480 455 363 123 41 chr3 196663042 196663408 -21373750 + L2 LINE L2 2877 3272 0 1518 170 13 22 chr3 196664425 196664743 -21372415 + MER33 DNA MER1_type 10 324 0 229 271 0 0 chr3 196665259 196665307 -21371851 + polypurine Low_complexity Low_complexity 6 53 0 971 138 0 17 chr3 196665307 196665488 -21371670 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 285 182 0 0 chr3 196665476 196665531 -21371627 + GA-rich Low_complexity Low_complexity 1 55 0 * 215 241 19 19 chr3 196665717 196665771 -21371387 + MIR SINE MIR 91 144 -118 192 267 0 0 chr3 196666942 196666987 -21370171 - L2 LINE L2 -3 3310 3266 534 263 25 0 chr3 196667104 196667222 -21369936 + MIR SINE MIR 13 133 -129 263 265 68 43 chr3 196667486 196667603 -21369555 - L2 LINE L2 -342 2972 2853 221 98 24 0 chr3 196667673 196667714 -21369444 + (TC)n Simple_repeat Simple_repeat 1 42 0 210 71 0 0 chr3 196667941 196667969 -21369189 + (T)n Simple_repeat Simple_repeat 1 28 0 21 36 0 0 chr3 196668776 196668804 -21368354 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr3 196670294 196670321 -21366837 + AT_rich Low_complexity Low_complexity 1 27 0 6910 84 8 8 chr3 196671511 196673255 -21363903 + L1PA7 LINE L1 4412 6154 0 308 313 149 20 chr3 196673472 196673673 -21363485 - L2 LINE L2 -854 2460 2234 201 352 50 39 chr3 196673677 196673856 -21363302 - L2 LINE L2 -1238 2076 1896 553 286 19 48 chr3 196673865 196674075 -21363083 + MIR SINE MIR 37 240 -22 395 286 118 22 chr3 196674221 196674415 -21362743 - MIR SINE MIR -33 229 16 994 176 16 11 chr3 196675002 196675190 -21361968 + MER5A DNA MER1_type 1 189 0 523 266 35 35 chr3 196675272 196675415 -21361743 - MER5B DNA MER1_type -2 176 34 227 336 74 20 chr3 196675647 196675891 -21361267 - L1M4 LINE L1 -978 5168 4912 2296 161 57 2 chr3 196675916 196676320 -21360838 + MSTB LTR MaLR 1 426 0 2016 154 15 15 chr3 196676369 196676706 -21360452 - MER1B DNA MER1_type 0 337 1 378 0 0 0 chr3 196676987 196677029 -21360129 + (CA)n Simple_repeat Simple_repeat 2 43 0 979 188 0 0 chr3 196677029 196677183 -21359975 + AluJb SINE Alu 135 288 -24 232 293 60 0 chr3 196677247 196677380 -21359778 - L1M4 LINE L1 -1545 4601 4461 240 316 219 7 chr3 196678112 196678267 -21358891 - MIR SINE MIR -70 192 5 252 244 11 78 chr3 196678510 196678600 -21358558 - MER5A DNA MER1_type -95 94 11 2096 95 0 0 chr3 196679305 196679569 -21357589 - AluSg SINE Alu -16 294 31 701 254 42 21 chr3 196680367 196680560 -21356598 - L2 LINE L2 0 3313 3117 402 305 69 29 chr3 196682330 196682511 -21354647 - MIR SINE MIR -36 172 26 315 0 0 0 chr3 196682515 196682550 -21354608 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2262 117 3 0 chr3 196684437 196684745 -21352413 + AluSp SINE Alu 1 309 -4 23 0 0 0 chr3 196685171 196685194 -21351964 + AT_rich Low_complexity Low_complexity 1 23 0 2109 91 0 7 chr3 196685574 196685849 -21351309 - AluSx SINE Alu -7 305 33 1130 259 25 14 chr3 196686141 196686427 -21350731 + MLT1I LTR MaLR 73 361 -48 206 333 182 0 chr3 196686835 196686934 -21350224 + L2 LINE L2 3153 3269 -3 321 263 113 25 chr3 196687486 196687646 -21349512 + LTR16C LTR ERVL 316 489 -2 196 282 28 56 chr3 196687749 196687820 -21349338 - L2 LINE L2 -18 3254 3186 * 291 326 123 0 chr3 196687813 196687951 -21349207 + MIR SINE MIR 20 174 -88 228 260 7 100 chr3 196689367 196689517 -21347641 - L1MEc LINE L1 -1377 4838 4703 442 173 144 10 chr3 196689517 196689621 -21347537 + MER63 DNA MER1_type 4 747 -315 296 269 15 0 chr3 196689625 196689692 -21347466 + MER63 DNA MER1_type 978 1045 -16 532 241 14 7 chr3 196689798 196689943 -21347215 - L1MEc LINE L1 -1542 4673 4528 260 123 53 0 chr3 196689997 196690054 -21347104 + (TA)n Simple_repeat Simple_repeat 1 60 0 551 30 0 132 chr3 196690054 196690251 -21346907 + (TTATA)n Simple_repeat Simple_repeat 4 174 0 317 135 45 39 chr3 196690260 196690438 -21346720 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 * 449 29 0 132 chr3 196690418 196690833 -21346325 + (TTATA)n Simple_repeat Simple_repeat 1 360 0 1489 268 134 73 chr3 196691000 196692221 -21344937 - L1MEc LINE L1 -1898 4317 3172 525 120 0 0 chr3 196692221 196692296 -21344862 - FLAM SINE Alu -25 118 44 1489 268 134 73 chr3 196692296 196693407 -21343751 - L1MEc LINE L1 -3043 3172 1738 1867 194 70 13 chr3 196693407 196693804 -21343354 - LTR52 LTR ERVL -1 420 1 1489 268 134 73 chr3 196693804 196694318 -21342840 - L1MEc LINE L1 -4477 1738 1257 203 59 0 29 chr3 196694608 196694642 -21342516 + (TTATA)n Simple_repeat Simple_repeat 2 34 0 2138 98 0 0 chr3 196694642 196694917 -21342241 - AluSq SINE Alu -27 286 12 558 304 57 48 chr3 196695922 196696636 -21340522 + L1ME3A LINE L1 3167 3887 -2259 331 335 72 0 chr3 196696717 196696884 -21340274 + L1ME3A LINE L1 4161 4339 -1807 1763 178 0 23 chr3 196696902 196697211 -21339947 + AluJo SINE Alu 1 302 -10 677 287 73 41 chr3 196697268 196698232 -21338926 + L1ME3A LINE L1 4943 5948 -222 591 316 27 34 chr3 196698343 196698606 -21338552 + MLT1I LTR MaLR 100 360 -49 516 264 138 6 chr3 196699914 196700081 -21337077 + MLT1I LTR MaLR 114 302 -107 287 190 0 180 chr3 196700462 196700562 -21336596 - MER2 DNA MER2_type -262 83 2 21 36 0 0 chr3 196700575 196700603 -21336555 + AT_rich Low_complexity Low_complexity 1 28 0 530 316 90 32 chr3 196700714 196701148 -21336010 + HAL1 LINE L1 102 560 -1947 246 242 0 32 chr3 196701293 196701355 -21335803 - L2 LINE L2 0 3313 3254 210 71 0 0 chr3 196702912 196702940 -21334218 + (A)n Simple_repeat Simple_repeat 1 28 0 1115 267 91 19 chr3 196705853 196706216 -21330942 + MLT1I LTR MaLR 1 389 -20 197 229 21 0 chr3 196706218 196706266 -21330892 - L2 LINE L2 0 3313 3265 4534 139 7 7 chr3 196706412 196707116 -21330042 - MER50 LTR ERV1 -30 704 1 256 345 119 40 chr3 196707266 196707492 -21329666 + L2 LINE L2 2893 3136 -136 334 288 125 11 chr3 196708422 196708606 -21328552 + MIR SINE MIR 58 262 0 185 243 68 14 chr3 196708690 196708764 -21328394 + L2 LINE L2 2666 2743 -571 520 267 206 29 chr3 196708989 196709363 -21327795 + MLT1H LTR MaLR 110 549 0 208 338 0 12 chr3 196709397 196709477 -21327681 + L2 LINE L2 2896 2974 -298 270 256 61 49 chr3 196709478 196709560 -21327598 + L2 LINE L2 3231 3313 0 453 325 139 47 chr3 196709754 196710249 -21326909 + L1ME4a LINE L1 5427 5967 -154 23 78 0 0 chr3 196710287 196710338 -21326820 + AT_rich Low_complexity Low_complexity 1 51 0 211 350 191 21 chr3 196710820 196711203 -21325955 + L2 LINE L2 2226 2673 -641 389 254 9 0 chr3 196711717 196711827 -21325331 + L1ME3 LINE L1 5919 6029 -133 * 5607 167 58 39 chr3 196711825 196713858 -21323300 - L1MA9 LINE L1 0 7731 5579 2277 112 3 0 chr3 196713858 196714170 -21322988 - AluSp SINE Alu 0 313 1 5607 167 58 39 chr3 196714170 196714366 -21322792 - L1MA9 LINE L1 -2152 5579 5388 231 36 0 0 chr3 196714367 196714395 -21322763 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 6317 93 23 24 chr3 196714396 196715586 -21321572 - L1PA10 LINE L1 -20 6148 4962 2080 118 3 0 chr3 196715586 196715873 -21321285 - AluSp SINE Alu 0 313 26 6317 93 23 24 chr3 196715873 196716023 -21321135 - L1PA10 LINE L1 -1206 4962 4813 5760 237 67 24 chr3 196716022 196716701 -21320457 - L1MA9 LINE L1 -2182 5383 4734 * 2303 154 25 48 chr3 196716701 196717143 -21320015 - MSTB1 LTR MaLR 0 432 1 5760 237 67 24 chr3 196717143 196719329 -21317829 - L1MA9 LINE L1 -2831 4734 2387 1998 315 63 11 chr3 196719348 196720301 -21316857 - L1MA9 LINE L1 -4910 2576 1833 1605 298 70 15 chr3 196720348 196720892 -21316266 - L1M3a LINE L1 -5371 584 11 199 304 18 0 chr3 196720911 196720967 -21316191 + MIR SINE MIR 88 144 -64 3233 222 24 62 chr3 196721291 196722123 -21315035 - MER21B LTR ERV1 -51 812 13 23 33 0 0 chr3 196722253 196722283 -21314875 + AT_rich Low_complexity Low_complexity 1 30 0 283 105 35 0 chr3 196722755 196722812 -21314346 + (TGGA)n Simple_repeat Simple_repeat 3 61 0 408 296 166 22 chr3 196723423 196723646 -21313512 - MIR SINE MIR 0 262 8 382 190 41 67 chr3 196725476 196725671 -21311487 - MER113 DNA MER1_type? -288 233 44 533 247 65 53 chr3 196726603 196726722 -21310436 + MIR SINE MIR 47 170 -92 2012 88 57 37 chr3 196726722 196727018 -21310140 - AluSx SINE Alu -10 302 1 533 247 65 53 chr3 196727018 196727068 -21310090 + MIR SINE MIR 170 218 -44 380 156 0 0 chr3 196727239 196727303 -21309855 + MER5A DNA MER1_type 42 105 -84 641 286 18 49 chr3 196727494 196727718 -21309440 - MIR SINE MIR -31 231 15 234 316 81 40 chr3 196727865 196728039 -21309119 + L2 LINE L2 2598 2778 -536 2159 127 0 0 chr3 196728746 196729045 -21308113 + AluSx SINE Alu 1 299 -13 411 275 52 7 chr3 196729124 196729300 -21307858 + L1ME LINE L1 5623 5789 -332 1955 219 32 86 chr3 196729363 196730755 -21306403 + L1MD2 LINE L1 4797 6113 -246 291 154 0 0 chr3 196730755 196730820 -21306338 + (TA)n Simple_repeat Simple_repeat 1 65 0 265 281 0 0 chr3 196730822 196730911 -21306247 + L1MC4 LINE L1 6613 6701 -1341 321 271 24 0 chr3 196730913 196730998 -21306160 + L1MC4 LINE L1 6614 6700 -1342 327 250 0 62 chr3 196731005 196731101 -21306057 + L1MC4 LINE L1 6614 6703 -1339 * 337 247 0 32 chr3 196731073 196731166 -21305992 - L1MC4 LINE L1 -1339 6703 6614 825 68 0 17 chr3 196731191 196731309 -21305849 - L1P LINE L1 -748 5424 5309 3596 51 2 0 chr3 196731309 196731757 -21305401 + L1PA7 LINE L1 5700 6149 -5 530 212 22 101 chr3 196731757 196731907 -21305251 + L1MD3 LINE L1 6121 6281 -1714 1995 122 0 4 chr3 196731907 196732208 -21304950 + AluSx SINE Alu 9 308 0 530 212 22 101 chr3 196732208 196732277 -21304881 + L1MD3 LINE L1 6281 7956 -39 268 277 32 0 chr3 196732705 196732799 -21304359 + L1ME LINE L1 5677 5773 -348 437 236 30 65 chr3 196735300 196735475 -21301683 - MIR SINE MIR -56 206 40 260 240 0 0 chr3 196735606 196735656 -21301502 + polypurine Low_complexity Low_complexity 3 52 0 202 152 0 91 chr3 196737767 196737833 -21299325 + T-rich Low_complexity Low_complexity 2 61 0 180 77 0 0 chr3 196738471 196738497 -21298661 + (A)n Simple_repeat Simple_repeat 1 26 0 189 338 25 12 chr3 196739056 196739136 -21298022 - MIR3 SINE MIR -36 172 92 196 373 85 33 chr3 196739170 196739323 -21297835 - L2 LINE L2 0 3272 3112 392 247 72 0 chr3 196739422 196739519 -21297639 + L2 LINE L2 3174 3277 -36 21 0 0 0 chr3 196741036 196741057 -21296101 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 196741173 196741197 -21295961 + AT_rich Low_complexity Low_complexity 1 24 0 244 261 131 62 chr3 196742307 196742437 -21294721 - MIR SINE MIR -32 230 92 189 246 7 130 chr3 196742687 196742825 -21294333 + MIR3 SINE MIR 81 201 -7 24 0 0 0 chr3 196743342 196743366 -21293792 + AT_rich Low_complexity Low_complexity 1 24 0 588 182 11 0 chr3 196744459 196744581 -21292577 + L1MB5 LINE L1 5929 6053 -121 395 149 14 0 chr3 196744581 196744648 -21292510 + L1MB8 LINE L1 6098 6172 -6 318 232 61 20 chr3 196744653 196744752 -21292406 + Charlie8 DNA MER1_type 96 198 -2219 830 153 13 0 chr3 196744757 196744914 -21292244 + L1MB2 LINE L1 6010 6168 -3 314 205 26 13 chr3 196745090 196745168 -21291990 + MER116 DNA Mariner 1 79 -1 255 218 282 0 chr3 196745297 196745375 -21291783 + MIR SINE MIR 53 152 -110 214 331 50 44 chr3 196746503 196746663 -21290495 + L2 LINE L2 3117 3277 -36 494 269 56 6 chr3 196747215 196747391 -21289767 + MIR SINE MIR 3 189 -62 2001 138 3 0 chr3 196747590 196747873 -21289285 + AluSx SINE Alu 3 286 -26 539 126 25 25 chr3 196747875 196747994 -21289164 + GA-rich Low_complexity Low_complexity 3 121 0 188 344 16 0 chr3 196748453 196748514 -21288644 + L2 LINE L2 3252 3313 0 721 231 174 5 chr3 196749960 196750172 -21286986 + MIR SINE MIR 15 262 0 1467 195 40 6 chr3 196750282 196750631 -21286527 - Charlie5 DNA MER1_type 0 2616 2256 380 236 0 19 chr3 196750648 196750754 -21286404 - Charlie5 DNA MER1_type -2507 105 2 1896 78 0 4 chr3 196751063 196751306 -21285852 - AluY SINE Alu -1 310 69 398 336 18 96 chr3 196751553 196751833 -21285325 - L2 LINE L2 0 3272 3015 904 322 165 36 chr3 196752047 196752463 -21284695 - L2 LINE L2 -557 2757 2396 2165 153 68 10 chr3 196752463 196752862 -21284296 - MSTB LTR MaLR 0 426 5 904 322 165 36 chr3 196752862 196753287 -21283871 - L2 LINE L2 -918 2396 1807 1345 208 96 3 chr3 196753421 196753734 -21283424 - MER2 DNA MER2_type -3 342 1 1971 50 8 0 chr3 196753917 196754159 -21282999 + L1PA5 LINE L1 5889 6132 -22 24 32 0 0 chr3 196754159 196754190 -21282968 + AT_rich Low_complexity Low_complexity 1 31 0 2068 100 4 4 chr3 196754230 196754511 -21282647 - AluSp SINE Alu -2 311 31 201 154 0 0 chr3 196754995 196755034 -21282124 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 357 145 0 0 chr3 196755064 196755126 -21282032 + (GGAA)n Simple_repeat Simple_repeat 1 62 0 210 315 35 0 chr3 196755250 196755362 -21281796 + MIR SINE MIR 67 143 -65 557 245 148 26 chr3 196756269 196756424 -21280734 - MER45A DNA AcHobo -3 175 2 192 269 26 51 chr3 196758205 196758283 -21278875 - MIR SINE MIR -118 144 69 870 214 87 15 chr3 196758653 196758849 -21278309 - MER20 DNA MER1_type -9 210 1 423 260 71 45 chr3 196758888 196759042 -21278116 - MIR SINE MIR -85 177 20 3002 195 22 8 chr3 196759978 196760657 -21276501 + L1MB4 LINE L1 5577 6290 -22 256 111 19 0 chr3 196760665 196760719 -21276439 + L1MB4 LINE L1 6124 6178 -2 354 324 70 47 chr3 196760759 196760972 -21276186 + L1ME LINE L1 5254 5471 -2337 226 323 24 0 chr3 196761038 196761165 -21275993 + L1ME LINE L1 5577 5706 -415 1082 293 64 14 chr3 196761335 196761772 -21275386 - L1ME4a LINE L1 -273 5848 5390 270 308 26 0 chr3 196762295 196762373 -21274785 + L2 LINE L2 3224 3303 -10 1567 142 208 0 chr3 196762783 196763071 -21274087 + MER7A DNA MER2_type 1 346 0 535 369 58 22 chr3 196763252 196763715 -21273443 + L2 LINE L2 2340 2819 -495 318 360 92 0 chr3 196763761 196763914 -21273244 + L2 LINE L2 2911 3077 -195 988 0 0 0 chr3 196765297 196765404 -21271754 - U6 snRNA snRNA 0 107 1 777 194 21 31 chr3 196765465 196765656 -21271502 + MER53 DNA DNA 1 189 0 21 36 0 0 chr3 196765844 196765872 -21271286 + AT_rich Low_complexity Low_complexity 1 28 0 13671 185 37 16 chr3 196766235 196773201 -21263957 + L1PB1 LINE L1 1 6204 -4 344 317 57 62 chr3 196773229 196773330 -21263828 - MIR SINE MIR -1 261 161 2380 162 116 11 chr3 196773330 196773794 -21263364 - MLT2B2 LTR ERVL 0 515 3 344 317 57 62 chr3 196773794 196773919 -21263239 - MIR SINE MIR -101 161 36 1699 177 130 31 chr3 196774060 196774484 -21262674 - MLT1C LTR MaLR 0 467 2 247 256 133 44 chr3 196775629 196775719 -21261439 + L2 LINE L2 3148 3245 -27 257 188 188 16 chr3 196776439 196776503 -21260655 - MLT1K LTR MaLR -331 257 183 644 146 64 0 chr3 196777156 196777266 -21259892 - L2 LINE L2 -16 3297 3181 183 303 81 30 chr3 196777401 196777500 -21259658 - MIR SINE MIR -33 229 126 342 373 40 0 chr3 196777801 196777951 -21259207 + L2 LINE L2 3114 3269 -3 784 247 51 38 chr3 196778968 196779203 -21257955 + MIR SINE MIR 13 250 -12 184 257 29 29 chr3 196779788 196779858 -21257300 + MIR SINE MIR 180 249 -13 254 306 167 21 chr3 196779991 196780135 -21257023 + LTR33A LTR ERVL 1 165 -358 896 87 0 8 chr3 196780135 196780262 -21256896 + AluY SINE Alu 134 259 -52 641 100 0 0 chr3 196780262 196780352 -21256806 + AluY SINE Alu 186 275 -36 234 0 0 0 chr3 196780353 196780379 -21256779 + (GAAAA)n Simple_repeat Simple_repeat 3 28 0 673 236 47 51 chr3 196780438 196780692 -21256466 + LTR33A LTR ERVL 262 514 -9 229 373 113 0 chr3 196780870 196781012 -21256146 + L2 LINE L2 3115 3272 0 186 374 121 0 chr3 196782063 196782162 -21254996 + L2 LINE L2 3162 3272 0 23 0 0 0 chr3 196782305 196782328 -21254830 + AT_rich Low_complexity Low_complexity 1 23 0 206 179 18 0 chr3 196782646 196782702 -21254456 + (TG)n Simple_repeat Simple_repeat 2 58 0 262 350 0 21 chr3 196782977 196783074 -21254084 - L2 LINE L2 -559 2755 2661 204 281 0 31 chr3 196784636 196784700 -21252458 + MIR SINE MIR 201 262 0 231 179 0 21 chr3 196784702 196784749 -21252409 - MIR SINE MIR -61 147 106 410 336 55 47 chr3 196785263 196785516 -21251642 + MIR SINE MIR 8 262 0 36 0 0 0 chr3 196786752 196786788 -21250370 + AT_rich Low_complexity Low_complexity 1 36 0 224 216 148 23 chr3 196787997 196788085 -21249073 - MIR3 SINE MIR -23 185 87 1532 198 0 8 chr3 196788197 196788460 -21248698 + MLT1A1 LTR MaLR 1 261 -104 833 158 0 0 chr3 196788460 196788587 -21248571 - AluSg/x SINE Alu -39 273 147 605 143 29 0 chr3 196788598 196788703 -21248455 + MLT1A1 LTR MaLR 258 365 0 28 29 0 0 chr3 196788766 196788801 -21248357 + AT_rich Low_complexity Low_complexity 1 35 0 383 272 118 99 chr3 196789774 196790152 -21247006 + MLT1K LTR MaLR 147 535 -53 225 0 0 0 chr3 196790152 196790177 -21246981 + (TTG)n Simple_repeat Simple_repeat 2 26 0 383 272 118 99 chr3 196790177 196790232 -21246926 + MLT1K LTR MaLR 535 588 0 1179 229 74 15 chr3 196790619 196790956 -21246202 + L1MC2 LINE L1 5530 5886 -1922 343 127 28 14 chr3 196791071 196791142 -21246016 + AluSp/q SINE Alu 232 303 0 2453 100 0 0 chr3 196791373 196791684 -21245474 - AluY SINE Alu 0 311 1 410 274 33 72 chr3 196792060 196792173 -21244985 + MIR SINE MIR 19 126 -136 1966 188 20 15 chr3 196792173 196792567 -21244591 - MSTD LTR MaLR 0 396 1 410 274 33 72 chr3 196792567 196792606 -21244552 + MIR SINE MIR 126 165 -97 1792 165 3 10 chr3 196793969 196794266 -21242892 + AluJb SINE Alu 1 295 -17 214 274 12 24 chr3 196794775 196794859 -21242299 + MIR SINE MIR 123 205 -57 2125 131 3 3 chr3 196794954 196795259 -21241899 - AluSx SINE Alu -7 305 1 4006 22 0 0 chr3 196795489 196796224 -21240934 - L1P1 LINE L1 -438 5717 4983 4210 83 8 163 chr3 196796335 196797202 -21239956 - L1PB1 LINE L1 0 6151 5419 413 55 18 0 chr3 196797193 196797248 -21239910 + L1MC2 LINE L1 6048 6103 -241 * 285 28 28 0 chr3 196797252 196797288 -21239870 + L1MC2 LINE L1 6067 6103 -241 463 96 27 0 chr3 196797292 196797365 -21239793 + L1MC2 LINE L1 6067 6141 -203 * 5133 189 30 18 chr3 196797364 196798184 -21238974 - L1MC1 LINE L1 -107 6506 5698 1636 148 4 0 chr3 196798184 196798460 -21238698 + L1PB3 LINE L1 5887 6163 0 5133 189 30 18 chr3 196798460 196799492 -21237666 - L1MC1 LINE L1 -915 5698 4617 1953 141 49 0 chr3 196799492 196799818 -21237340 + MER2 DNA MER2_type 2 343 -1 2300 237 39 8 chr3 196800500 196802286 -21234872 - L1MC1 LINE L1 -1809 4617 2608 929 212 5 16 chr3 196802286 196802470 -21234688 - AluJo SINE Alu -130 182 1 2223 169 39 80 chr3 196802473 196803212 -21233946 - L1MC1 LINE L1 -3947 2479 1895 2703 174 21 6 chr3 196803333 196803851 -21233307 - L1MC1 LINE L1 -5309 1117 592 283 96 0 0 chr3 196803863 196803906 -21233252 - L1MEc LINE L1 -4801 2309 2116 189 0 0 0 chr3 196803920 196803941 -21233217 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 2432 114 11 0 chr3 196803941 196804291 -21232867 - L1PA10 LINE L1 -21 6147 5794 378 215 34 87 chr3 196804587 196804736 -21232422 - L1MEc LINE L1 -6593 266 126 282 330 0 0 chr3 196804789 196804892 -21232266 + L1ME3A LINE L1 5644 5746 -416 599 149 36 15 chr3 196804915 196805057 -21232101 + L1ME3A LINE L1 5822 5959 -219 337 262 78 73 chr3 196805103 196805221 -21231937 + L1ME3A LINE L1 5965 6087 -83 2422 57 0 0 chr3 196805221 196805546 -21231612 - AluY SINE Alu 0 325 1 337 262 78 73 chr3 196805546 196805617 -21231541 + L1ME3A LINE L1 6087 6156 -14 375 298 36 12 chr3 196805621 196805789 -21231369 + L1MC4a LINE L1 5740 5911 -1897 32 0 0 0 chr3 196805936 196805968 -21231190 + AT_rich Low_complexity Low_complexity 1 32 0 283 295 143 0 chr3 196807417 196807522 -21229636 - L2 LINE L2 -182 3090 2971 182 37 37 0 chr3 196807830 196807857 -21229301 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 496 301 61 38 chr3 196807965 196808178 -21228980 + MLT1K LTR MaLR 303 520 -68 722 244 113 0 chr3 196809470 196809638 -21227520 + MER5A DNA MER1_type 3 189 0 34 55 0 0 chr3 196810597 196810652 -21226506 + AT_rich Low_complexity Low_complexity 1 55 0 22 56 0 0 chr3 196811361 196811397 -21225761 + AT_rich Low_complexity Low_complexity 1 36 0 1790 175 0 7 chr3 196812782 196813091 -21224067 + AluJo SINE Alu 1 307 0 534 274 57 17 chr3 196814052 196814227 -21222931 - MER5A DNA MER1_type -2 187 6 189 97 0 32 chr3 196814234 196814265 -21222893 + L3b LINE CR1 1535 1564 -19 29 0 0 0 chr3 196814470 196814499 -21222659 + AT_rich Low_complexity Low_complexity 1 29 0 1598 90 0 0 chr3 196814505 196814706 -21222452 - AluSc SINE Alu -13 296 96 409 343 17 0 chr3 196814709 196814872 -21222286 - MIR SINE MIR -37 225 60 1180 187 25 0 chr3 196814965 196815200 -21221958 - L1MA7 LINE L1 -398 5893 5653 2167 128 8 25 chr3 196815201 196815569 -21221589 + L1MA7 LINE L1 5883 6244 -47 208 149 64 32 chr3 196815599 196815693 -21221465 + (TATAA)n Simple_repeat Simple_repeat 1 97 0 553 234 113 39 chr3 196816118 196816375 -21220783 + L1ME4a LINE L1 5770 6045 -76 1448 196 112 6 chr3 196816379 196816700 -21220458 - MLT1A1 LTR MaLR -4 361 7 2354 90 0 0 chr3 196816819 196817120 -21220038 + AluY SINE Alu 1 301 -10 558 212 62 82 chr3 196817840 196818035 -21219123 - MIR SINE MIR -17 245 46 323 233 97 19 chr3 196818044 196818147 -21219011 - MIR SINE MIR -38 224 114 770 285 31 17 chr3 196818352 196818587 -21218571 + MIR SINE MIR 11 249 -13 353 259 43 7 chr3 196818731 196818870 -21218288 + MER103 DNA DNA 13 156 -10 230 290 14 109 chr3 196819194 196819332 -21217826 + L2 LINE L2 2928 3052 -220 199 353 52 9 chr3 196819377 196819493 -21217665 + L2 LINE L2 3189 3309 -4 644 191 45 0 chr3 196819874 196819984 -21217174 + FLAM_C SINE Alu 2 116 -17 199 28 56 28 chr3 196819987 196820023 -21217135 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 269 356 57 11 chr3 196820191 196820368 -21216790 + L2 LINE L2 2343 2527 -787 819 232 176 20 chr3 196820725 196821119 -21216039 - L1MC4a LINE L1 -537 5584 5476 23 0 0 0 chr3 196821864 196821887 -21215271 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr3 196824290 196824319 -21212839 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr3 196826137 196826160 -21210998 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr3 196827538 196827562 -21209596 + AT_rich Low_complexity Low_complexity 1 24 0 1618 203 98 50 chr3 196828718 196829200 -21207958 - MLT1D LTR MaLR 0 505 1 709 177 14 14 chr3 196829288 196829429 -21207729 + MER5B DNA MER1_type 37 177 -1 21 82 0 0 chr3 196830577 196830626 -21206532 + AT_rich Low_complexity Low_complexity 1 49 0 465 299 30 24 chr3 196830772 196830936 -21206222 - MIR SINE MIR -49 213 49 182 325 32 89 chr3 196831310 196831467 -21205691 + MER5B DNA MER1_type 1 148 -30 33 0 0 0 chr3 196832373 196832406 -21204752 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr3 196833047 196833070 -21204088 + AT_rich Low_complexity Low_complexity 1 23 0 550 191 16 32 chr3 196833240 196833366 -21203792 + L1MA9 LINE L1 5957 6080 -232 408 214 10 0 chr3 196833377 196833480 -21203678 + L1MA9 LINE L1 6190 6293 -19 33 0 0 0 chr3 196833480 196833513 -21203645 + AT_rich Low_complexity Low_complexity 1 33 0 312 91 0 0 chr3 196833711 196833755 -21203403 + (CA)n Simple_repeat Simple_repeat 2 45 0 2146 120 18 0 chr3 196833755 196834089 -21203069 - L1PA15 LINE L1 -8 6157 5818 275 317 57 53 chr3 196834119 196834400 -21202758 - L1MC4a LINE L1 -1897 5911 5630 312 336 7 14 chr3 196834454 196834597 -21202561 + L1ME LINE L1 5506 5647 -2161 248 213 288 0 chr3 196834657 196834737 -21202421 - MIR3 SINE MIR -6 202 100 2745 219 122 21 chr3 196835099 196835820 -21201338 - MER21B LTR ERV1 -51 812 19 422 209 11 22 chr3 196835842 196835933 -21201225 - MER21B LTR ERV1 -773 90 1 282 261 63 48 chr3 196836397 196836604 -21200554 + L1ME LINE L1 5595 5804 -317 6006 63 0 0 chr3 196839080 196840015 -21197143 + L1PA8 LINE L1 5409 6343 0 189 74 0 0 chr3 196840022 196840049 -21197109 + (GGAA)n Simple_repeat Simple_repeat 3 29 0 183 258 134 31 chr3 196842115 196842212 -21194946 - L2 LINE L2 0 3313 3207 351 268 32 16 chr3 196842287 196842410 -21194748 + L1MC4 LINE L1 7916 8040 -2 269 307 94 31 chr3 196842795 196842922 -21194236 + L2 LINE L2 3138 3272 0 684 121 0 26 chr3 196843809 196843925 -21193233 + L1PA13 LINE L1 6046 6158 -5 405 247 73 7 chr3 196844773 196844923 -21192235 + MIR SINE MIR 88 247 -15 293 349 51 40 chr3 196845155 196845330 -21191828 - L2 LINE L2 -635 2679 2503 321 271 47 0 chr3 196845336 196845421 -21191737 - MLT1H1 LTR MaLR -466 89 1 1182 198 0 0 chr3 196845516 196845748 -21191410 - L1PB4 LINE L1 -2 6154 5923 2010 118 0 40 chr3 196845830 196846159 -21190999 - L1PB4 LINE L1 -249 5907 5592 5972 92 12 2 chr3 196846233 196847068 -21190090 - L1PA11 LINE L1 0 6489 5647 * 21811 195 13 35 chr3 196847064 196848315 -21188843 - L1PA11 LINE L1 -1090 5371 4094 5826 60 3 1 chr3 196848315 196849050 -21188108 - L1PA8 LINE L1 -13 6159 5424 21811 195 13 35 chr3 196849050 196853272 -21183886 - L1PA11 LINE L1 -2367 4094 10 545 235 161 13 chr3 196853397 196853546 -21183612 - MER5A DNA MER1_type -7 182 12 6434 73 9 2 chr3 196853557 196854416 -21182742 - L1PA7 LINE L1 -5 6149 5285 26523 100 11 2 chr3 196854416 196858272 -21178886 + L1PA7 LINE L1 1405 5293 -853 1850 167 0 14 chr3 196858562 196858855 -21178303 - AluJo SINE Alu -23 289 1 219 290 47 47 chr3 196858877 196858984 -21178174 - MIR SINE MIR -83 179 73 347 353 63 52 chr3 196860260 196860529 -21176629 - L2 LINE L2 -87 3185 2914 205 50 25 50 chr3 196862388 196862428 -21174730 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr3 196862968 196862989 -21174169 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr3 196863027 196863047 -21174111 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 389 262 43 53 chr3 196863127 196863314 -21173844 + Charlie8 DNA MER1_type 237 421 -1996 180 214 24 0 chr3 196864708 196864750 -21172408 - L2 LINE L2 -8 3305 3263 32 43 0 0 chr3 196864796 196864842 -21172316 + AT_rich Low_complexity Low_complexity 1 46 0 189 241 0 74 chr3 196864966 196865020 -21172138 - MIR SINE MIR -147 115 66 301 330 93 0 chr3 196865168 196865265 -21171893 - L2 LINE L2 -33 3239 3134 693 211 0 26 chr3 196865281 196865433 -21171725 + L2 LINE L2 2891 3038 -275 1907 96 85 0 chr3 196866041 196866301 -21170857 + AluSg SINE Alu 15 296 -14 467 344 45 24 chr3 196866301 196866635 -21170523 + L1ME LINE L1 2215 2555 -3591 207 0 0 0 chr3 196866693 196866716 -21170442 + (CA)n Simple_repeat Simple_repeat 1 23 0 243 199 87 62 chr3 196866716 196866877 -21170281 + L1ME LINE L1 2665 2829 -3317 266 256 13 0 chr3 196866986 196867064 -21170094 + L1ME LINE L1 4536 4614 -1532 2866 16 0 0 chr3 196867185 196867503 -21169655 + AluYb8 SINE Alu 1 318 0 291 261 39 73 chr3 196867633 196868063 -21169095 + L1ME LINE L1 5045 5463 -743 3037 285 66 16 chr3 196868533 196869783 -21167375 - L2 LINE L2 -41 3272 1955 780 309 32 0 chr3 196869783 196870032 -21167126 + MIR SINE MIR 2 258 -4 919 234 36 50 chr3 196870076 196870354 -21166804 - L2 LINE L2 -1363 1951 1678 484 227 85 21 chr3 196870500 196870641 -21166517 + L2 LINE L2 3162 3311 -2 225 272 120 54 chr3 196870652 196870744 -21166414 - MIR SINE MIR -79 129 32 551 312 14 14 chr3 196871832 196872053 -21165105 + L1ME LINE L1 5597 5817 -304 337 331 50 8 chr3 196873398 196873519 -21163639 - L2 LINE L2 -5 3267 3142 2271 84 0 3 chr3 196873919 196874203 -21162955 + AluSq SINE Alu 1 283 -30 319 344 32 0 chr3 196874222 196874315 -21162843 - L2 LINE L2 -24 3289 3194 406 347 42 10 chr3 196874698 196874891 -21162267 - MIR SINE MIR -47 215 17 446 325 53 11 chr3 196875263 196875451 -21161707 + MIR3 SINE MIR 10 205 -3 231 226 0 38 chr3 196875674 196875727 -21161431 + polypurine Low_complexity Low_complexity 3 53 0 2007 155 3 0 chr3 196876080 196876384 -21160774 - AluSx SINE Alu -7 305 1 527 252 47 106 chr3 196877509 196877729 -21159429 + MER102b DNA MER1_type 103 334 -1094 180 0 0 0 chr3 196877729 196877749 -21159409 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2007 100 0 56 chr3 196877751 196878070 -21159088 - AluY SINE Alu -10 301 1 527 252 47 106 chr3 196878070 196878100 -21159058 + MER102b DNA MER1_type 335 341 0 268 333 101 8 chr3 196878100 196878229 -21158929 - MIR SINE MIR -31 231 91 1753 163 25 0 chr3 196878313 196878596 -21158562 + AluJb SINE Alu 3 292 -20 481 295 29 6 chr3 196878604 196878777 -21158381 + MER5B DNA MER1_type 1 177 -1 1637 149 106 3 chr3 196879102 196879384 -21157774 + AluJo SINE Alu 1 311 -1 21 0 0 0 chr3 196880386 196880407 -21156751 + AT_rich Low_complexity Low_complexity 1 21 0 210 37 0 0 chr3 196881346 196881373 -21155785 + (CATA)n Simple_repeat Simple_repeat 4 30 0 232 148 19 37 chr3 196881375 196881429 -21155729 - LTR66 LTR ERVL -175 435 383 674 280 119 31 chr3 196881601 196881955 -21155203 - MLT1K LTR MaLR -77 511 127 2023 135 0 49 chr3 196882832 196883159 -21153999 + AluSx SINE Alu 1 311 -1 1099 305 88 46 chr3 196883440 196884007 -21153151 + L3 LINE CR1 899 1489 -88 428 224 0 0 chr3 196884005 196884090 -21153068 + MIR SINE MIR 58 142 -120 * 578 253 113 11 chr3 196884177 196884363 -21152795 + MIR SINE MIR 58 262 0 2205 159 28 14 chr3 196885043 196885402 -21151756 + THE1B LTR MaLR 1 364 0 11966 81 1 16 chr3 196885402 196887006 -21150152 + THE1B-int LTR MaLR 1 1580 0 2092 133 67 14 chr3 196887006 196887352 -21149806 + THE1B LTR MaLR 1 364 0 229 148 19 19 chr3 196888233 196888287 -21148871 + GA-rich Low_complexity Low_complexity 3 56 0 1920 149 7 0 chr3 196888343 196888667 -21148491 - AluSx SINE Alu 0 326 1 677 200 0 30 chr3 196889136 196889271 -21147887 + FLAM_A SINE Alu 12 142 0 491 256 74 37 chr3 196889278 196889547 -21147611 + L1ME4a LINE L1 5737 6015 -106 337 324 24 6 chr3 196889581 196889751 -21147407 + L1ME4a LINE L1 5708 5880 -241 387 0 0 0 chr3 196889751 196889794 -21147364 + (TA)n Simple_repeat Simple_repeat 2 44 0 6923 176 12 4 chr3 196890228 196892513 -21144645 - L1PA16 LINE L1 -9 6157 3855 21 57 0 0 chr3 196892707 196892742 -21144416 + AT_rich Low_complexity Low_complexity 1 35 0 2160 101 21 3 chr3 196893008 196893295 -21143863 - AluSc SINE Alu -17 292 1 330 26 0 0 chr3 196893637 196893676 -21143482 + (TC)n Simple_repeat Simple_repeat 2 40 0 293 318 69 71 chr3 196893935 196894295 -21142863 + L2 LINE L2 2710 3065 -207 189 267 0 0 chr3 196894359 196894404 -21142754 - MIR SINE MIR -5 257 213 2390 104 0 0 chr3 196894405 196894712 -21142446 + AluSx SINE Alu 1 307 -5 880 319 92 33 chr3 196894912 196895714 -21141444 + L2 LINE L2 2457 3305 -8 1071 254 33 0 chr3 196895732 196895972 -21141186 - MIR SINE MIR -12 250 3 207 341 59 37 chr3 196895997 196896132 -21141026 - L2 LINE L2 -203 3069 2932 226 267 64 27 chr3 196896282 196896409 -21140749 + MIR SINE MIR 20 152 -59 3333 248 138 52 chr3 196896700 196897298 -21139860 - L1MEd LINE L1 -1538 4591 4046 1626 200 5 70 chr3 196897298 196897698 -21139460 - MLT1A2 LTR MaLR 0 374 1 3333 248 138 52 chr3 196897698 196899137 -21138021 - L1MEd LINE L1 -2083 4046 2379 245 118 0 0 chr3 196899211 196899245 -21137913 - Alu SINE Alu -20 282 249 617 281 100 32 chr3 196899249 196899487 -21137671 - L1MEd LINE L1 -4620 1509 1289 2053 206 36 5 chr3 196899487 196899900 -21137258 + MSTB LTR MaLR 1 426 0 617 281 100 32 chr3 196899900 196900209 -21136949 - L1MEd LINE L1 -4840 1289 913 2269 102 3 0 chr3 196900209 196900504 -21136654 - AluSp SINE Alu -17 296 1 617 281 100 32 chr3 196900504 196900680 -21136478 - L1MEd LINE L1 -5216 913 750 739 251 63 31 chr3 196901234 196901457 -21135701 + L2 LINE L2 2583 2812 -502 378 332 72 10 chr3 196901477 196901769 -21135389 + L1M4 LINE L1 2306 2615 -3531 273 292 69 7 chr3 196901986 196902130 -21135028 + L1M4 LINE L1 2691 2843 -3303 674 140 9 0 chr3 196902309 196902423 -21134735 + L1MA9 LINE L1 6190 6304 -8 195 204 0 0 chr3 196902516 196902565 -21134593 + GA-rich Low_complexity Low_complexity 2 50 0 2058 123 7 7 chr3 196902646 196902954 -21134204 - AluSc SINE Alu -1 308 1 21 0 0 0 chr3 196902957 196902978 -21134180 + AT_rich Low_complexity Low_complexity 1 21 0 3676 170 5 3 chr3 196902985 196903972 -21133186 - L1PB1 LINE L1 -572 5579 4589 3845 124 0 2 chr3 196903972 196904552 -21132606 + L1PB1 LINE L1 5570 6148 -3 25 0 0 0 chr3 196904589 196904614 -21132544 + AT_rich Low_complexity Low_complexity 1 25 0 266 304 10 0 chr3 196904629 196904731 -21132427 + L1M4 LINE L1 3377 3479 -2667 649 219 0 0 chr3 196904773 196904892 -21132266 + FLAM_C SINE Alu 2 120 -13 312 27 0 0 chr3 196904892 196904929 -21132229 + (TA)n Simple_repeat Simple_repeat 2 38 0 * 333 0 0 0 chr3 196904928 196904965 -21132193 + (GA)n Simple_repeat Simple_repeat 2 38 0 361 170 52 26 chr3 196904966 196905119 -21132039 + (TA)n Simple_repeat Simple_repeat 2 158 0 247 203 76 13 chr3 196905119 196905166 -21131992 - LTR66 LTR ERVL -166 444 389 279 0 0 0 chr3 196905166 196905197 -21131961 + (GA)n Simple_repeat Simple_repeat 2 32 0 247 203 76 13 chr3 196905197 196905228 -21131930 - LTR66 LTR ERVL -221 389 361 33 25 0 0 chr3 196905994 196906034 -21131124 + AT_rich Low_complexity Low_complexity 1 40 0 37 107 0 0 chr3 196906098 196906247 -21130911 + AT_rich Low_complexity Low_complexity 1 149 0 429 20 0 0 chr3 196907284 196907334 -21129824 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 441 242 0 40 chr3 196907467 196907566 -21129592 - L2 LINE L2 -5 3308 3214 441 269 50 0 chr3 196907668 196907787 -21129371 - L2 LINE L2 -1 3312 3188 410 241 46 51 chr3 196907912 196908128 -21129030 - MER113 DNA MER1_type? -304 217 3 219 69 0 0 chr3 196908834 196908863 -21128295 + (A)n Simple_repeat Simple_repeat 1 29 0 183 129 0 0 chr3 196909980 196910011 -21127147 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 2329 80 3 13 chr3 196911636 196911935 -21125223 + AluSp SINE Alu 1 296 -17 1596 208 7 0 chr3 196912216 196912504 -21124654 - AluJb SINE Alu -22 290 1 1114 160 5 29 chr3 196913755 196913961 -21123197 + MER3 DNA MER1_type 9 209 0 240 268 18 0 chr3 196914497 196914553 -21122605 + L2 LINE L2 3216 3272 0 348 140 18 0 chr3 196914574 196914631 -21122527 - L1P4 LINE L1 -457 5704 5647 * 452 88 0 0 chr3 196914630 196914698 -21122460 + L1PA14 LINE L1 5762 5829 -334 24 32 0 0 chr3 196914702 196914733 -21122425 + AT_rich Low_complexity Low_complexity 1 31 0 2064 101 24 24 chr3 196914751 196915088 -21122070 + L1PA14 LINE L1 5814 6150 -11 576 159 80 18 chr3 196915218 196915331 -21121827 + FRAM SINE Alu 38 157 -19 200 365 0 0 chr3 196915568 196915631 -21121527 + MIR SINE MIR 20 82 -180 925 181 37 5 chr3 196915660 196915848 -21121310 - MIR SINE MIR -1 261 68 242 239 34 86 chr3 196915931 196916048 -21121110 + MIR SINE MIR 103 213 -49 21 0 0 0 chr3 196916889 196916910 -21120248 + AT_rich Low_complexity Low_complexity 1 21 0 273 318 47 41 chr3 196917189 196917359 -21119799 - MLT1J2 LTR MaLR -14 436 266 335 276 83 45 chr3 196917415 196917571 -21119587 - MLT1J2 LTR MaLR -288 162 1 637 282 75 0 chr3 196917571 196917745 -21119413 - MIR SINE MIR -35 227 41 207 186 0 0 chr3 196918094 196918137 -21119021 + (CATATA)n Simple_repeat Simple_repeat 6 48 0 1517 75 142 4 chr3 196919128 196919368 -21117790 + L1MA1 LINE L1 6030 6302 0 243 224 24 112 chr3 196919677 196919802 -21117356 + MER103 DNA DNA 29 142 -24 628 289 81 9 chr3 196919918 196920129 -21117029 + MIR SINE MIR 3 228 -34 2606 45 0 0 chr3 196921043 196921351 -21115807 + AluY SINE Alu 1 308 -3 2709 29 3 0 chr3 196921775 196922082 -21115076 + AluY SINE Alu 1 308 -3 5799 200 18 38 chr3 196922294 196923002 -21114156 - L1MB4 LINE L1 -5 6175 5454 201 39 0 0 chr3 196923002 196923028 -21114130 + (TG)n Simple_repeat Simple_repeat 2 27 0 5799 200 18 38 chr3 196923028 196924633 -21112525 - L1MB4 LINE L1 -726 5454 3916 339 25 0 0 chr3 196925710 196925750 -21111408 + (TC)n Simple_repeat Simple_repeat 1 40 0 * 396 40 0 0 chr3 196925749 196925799 -21111359 + (CA)n Simple_repeat Simple_repeat 1 50 0 1863 216 54 84 chr3 196925865 196926424 -21110734 + MER119 DNA MER1_type 1 542 -41 1232 173 45 130 chr3 196926640 196927040 -21110118 - MLT1A2 LTR MaLR -8 366 1 311 241 13 13 chr3 196927278 196927357 -21109801 - MIR SINE MIR -151 111 33 192 248 18 41 chr3 196927542 196927673 -21109485 + MIR SINE MIR 32 211 -51 2110 154 3 0 chr3 196927763 196928074 -21109084 + AluJo SINE Alu 1 312 0 301 278 49 35 chr3 196928383 196928527 -21108631 - MER103 DNA DNA -13 153 8 508 291 92 5 chr3 196928561 196928757 -21108401 + MIR SINE MIR 1 213 -49 221 214 0 100 chr3 196932167 196932237 -21104921 - MIR3 SINE MIR -23 185 123 1888 134 4 0 chr3 196932537 196932805 -21104353 + AluSx SINE Alu 5 273 -39 443 205 211 62 chr3 196933028 196933189 -21103969 + MER5A DNA MER1_type 4 188 -1 1433 207 81 3 chr3 196933198 196933507 -21103651 - MER58B DNA MER1_type 0 341 9 1517 220 10 0 chr3 196933638 196933929 -21103229 + AluJb SINE Alu 1 294 -18 247 288 8 83 chr3 196934788 196934829 -21102329 + MER5B DNA MER1_type 6 49 -129 1871 136 24 3 chr3 196934829 196935123 -21102035 - AluSx SINE Alu -12 300 1 247 288 8 83 chr3 196935123 196935213 -21101945 + MER5B DNA MER1_type 49 127 -51 528 321 40 36 chr3 196935495 196935744 -21101414 - MIR SINE MIR 0 262 13 35 0 0 0 chr3 196935815 196935850 -21101308 + AT_rich Low_complexity Low_complexity 1 35 0 206 333 13 0 chr3 196936203 196936281 -21100877 + (TA)n Simple_repeat Simple_repeat 2 80 0 387 105 0 0 chr3 196937139 196937196 -21099962 + (T)n Simple_repeat Simple_repeat 1 57 0 381 43 0 0 chr3 196938691 196938738 -21098420 + (CA)n Simple_repeat Simple_repeat 1 47 0 237 33 0 0 chr3 196938737 196938767 -21098391 + (TC)n Simple_repeat Simple_repeat 2 31 0 * 27 0 0 0 chr3 196940497 196940524 -21096634 + AT_rich Low_complexity Low_complexity 1 27 0 210 71 0 0 chr3 196941477 196941505 -21095653 + (A)n Simple_repeat Simple_repeat 1 28 0 442 248 78 68 chr3 196941711 196941917 -21095241 - MIR SINE MIR -2 260 53 1328 157 12 4 chr3 196942030 196942272 -21094886 + L1MA8 LINE L1 6024 6267 -24 29 0 0 0 chr3 196942735 196942764 -21094394 + AT_rich Low_complexity Low_complexity 1 29 0 2037 198 59 20 chr3 196942808 196943348 -21093810 - Charlie1a DNA MER1_type 0 1455 895 729 166 89 77 chr3 196943358 196943527 -21093631 - AluJo SINE Alu -141 171 1 599 251 47 33 chr3 196943527 196943742 -21093416 - Charlie1a DNA MER1_type -536 919 702 * 1941 196 40 35 chr3 196943739 196944163 -21092995 - Charlie1a DNA MER1_type -1000 455 30 3716 127 2 2 chr3 196944963 196945530 -21091628 - L1PB1 LINE L1 -15 6136 5570 3671 171 5 2 chr3 196945530 196946516 -21090642 + L1PB1 LINE L1 4589 5579 -572 21 0 0 0 chr3 196946523 196946544 -21090614 + AT_rich Low_complexity Low_complexity 1 21 0 1579 218 3 0 chr3 196946547 196946840 -21090318 + AluJb SINE Alu 1 294 -18 703 270 54 0 chr3 196948560 196948764 -21088394 + MIR SINE MIR 46 260 -2 183 327 152 24 chr3 196949049 196949214 -21087944 - L2 LINE L2 -5 3308 3123 1511 170 0 41 chr3 196949329 196949625 -21087533 + AluJo SINE Alu 25 309 0 216 111 0 0 chr3 196949904 196949940 -21087218 + (A)n Simple_repeat Simple_repeat 1 36 0 7801 149 16 29 chr3 196950503 196951916 -21085242 - L1P LINE L1 -4750 1396 2 1453 155 16 4 chr3 196951918 196952340 -21084818 - L1P4 LINE L1 -672 5494 5070 547 123 49 16 chr3 196952519 196952641 -21084517 - L1P4 LINE L1 -4616 1530 1405 6375 81 2 5 chr3 196952641 196953513 -21083645 + L1PA5 LINE L1 5285 6154 0 275 241 49 93 chr3 196953529 196953691 -21083467 - L1MC/D LINE L1 -2344 5464 5310 242 191 0 0 chr3 196953721 196953768 -21083390 + L1MA1 LINE L1 6252 6298 -4 180 0 0 0 chr3 196954285 196954305 -21082853 + (TG)n Simple_repeat Simple_repeat 1 20 0 231 322 112 28 chr3 196954352 196954495 -21082663 + MIR SINE MIR 12 166 -96 9990 106 4 0 chr3 196954618 196956312 -21080846 - L1P2 LINE L1 -567 5587 3886 8587 79 18 5 chr3 196956428 196957630 -21079528 + L1PA5 LINE L1 3279 4495 -1651 2604 107 51 5 chr3 196957737 196958157 -21079001 + L1PA5 LINE L1 5685 6125 -29 188 327 18 0 chr3 197059264 197059319 -20977839 + L2 LINE L2 3169 3224 -48 2526 76 3 0 chr3 197059395 197059696 -20977462 + AluSq SINE Alu 1 302 -11 1934 155 17 0 chr3 197059770 197060061 -20977097 + AluSx SINE Alu 1 296 -16 1721 171 42 3 chr3 197060066 197060353 -20976805 + AluJb SINE Alu 2 299 -13 1147 101 17 11 chr3 197060425 197060603 -20976555 - AluY SINE Alu -6 305 127 354 282 0 0 chr3 197060721 197060845 -20976313 - AluSg SINE Alu -173 127 4 3567 149 43 7 chr3 197060845 197061325 -20975833 + L1MC1 LINE L1 5696 6204 -129 2212 112 23 0 chr3 197061325 197061630 -20975528 + AluSx SINE Alu 1 312 0 3567 149 43 7 chr3 197061630 197061752 -20975406 + L1MC1 LINE L1 6204 6320 -13 2293 89 0 0 chr3 197061756 197062069 -20975089 - AluSg SINE Alu 0 313 1 28 0 0 0 chr3 197062069 197062097 -20975061 + AT_rich Low_complexity Low_complexity 1 28 0 341 315 25 37 chr3 197063549 197063711 -20973447 + MIR SINE MIR 2 161 -101 2172 108 3 11 chr3 197063717 197064027 -20973131 + AluSq SINE Alu 1 308 0 681 263 6 19 chr3 197064085 197064245 -20972913 - MIR SINE MIR -31 231 74 1007 208 0 56 chr3 197064245 197064349 -20972809 - AluJo SINE Alu -96 216 129 2401 79 3 0 chr3 197064349 197064641 -20972517 + AluY SINE Alu 1 293 -18 1007 208 0 56 chr3 197064641 197064752 -20972406 - AluJo SINE Alu -183 129 13 991 111 7 0 chr3 197065139 197065274 -20971884 + AluJb SINE Alu 1 136 -176 2144 123 10 0 chr3 197065655 197065956 -20971202 + AluSq SINE Alu 1 304 -9 212 367 0 11 chr3 197067043 197067133 -20970025 + MIR SINE MIR 16 104 -104 1635 161 30 33 chr3 197067314 197067613 -20969545 + AluJo SINE Alu 1 298 -14 606 108 8 2 chr3 197067634 197067897 -20969261 + AluSx SINE Alu 1 313 0 2328 100 7 0 chr3 197068078 197068388 -20968770 + AluSp SINE Alu 1 312 -1 1181 59 33 0 chr3 197068403 197068555 -20968603 + AluSp SINE Alu 1 157 -156 1081 83 0 0 chr3 197068727 197068860 -20968298 + AluSp SINE Alu 166 298 -15 2474 88 0 0 chr3 197069271 197069578 -20967580 + AluY SINE Alu 1 307 -4 981 191 0 0 chr3 197069578 197069735 -20967423 + AluJb SINE Alu 134 290 -22 556 195 0 0 chr3 197069779 197069866 -20967292 + AluJ/FLAM SINE Alu 5 91 -221 680 158 24 0 chr3 197069884 197070011 -20967147 + L1MDa LINE L1 2010 2139 -4401 902 133 62 44 chr3 197070029 197070255 -20966903 + L1MDa LINE L1 2358 2587 -3953 706 188 0 0 chr3 197070256 197070373 -20966785 + FLAM_C SINE Alu 2 118 -25 2043 227 22 4 chr3 197070414 197070920 -20966238 + L1MDa LINE L1 2572 3086 -3454 2108 137 10 3 chr3 197070941 197071247 -20965911 - AluSc SINE Alu -1 308 1 609 137 36 0 chr3 197071259 197071427 -20965731 + (TA)n Simple_repeat Simple_repeat 1 174 0 740 169 0 59 chr3 197071427 197071563 -20965595 - FLAM_C SINE Alu -14 129 2 2161 203 12 47 chr3 197071564 197072166 -20964992 + L1MDa LINE L1 3070 3650 -2890 1031 173 0 51 chr3 197072166 197072363 -20964795 + AluJo SINE Alu 87 273 -39 886 221 48 171 chr3 197072365 197072791 -20964367 + L1MDa LINE L1 3668 4145 -2395 2385 101 3 0 chr3 197072791 197073097 -20964061 - AluSp SINE Alu -6 307 1 886 221 48 171 chr3 197073097 197073228 -20963930 + L1MDa LINE L1 4145 4291 -2249 2208 112 7 0 chr3 197073228 197073524 -20963634 + AluSx SINE Alu 1 298 -14 886 221 48 171 chr3 197073524 197073629 -20963529 + L1MDa LINE L1 4291 4407 -2133 1409 226 0 16 chr3 197073629 197073934 -20963224 + AluJo SINE Alu 3 302 -10 886 221 48 171 chr3 197073934 197074059 -20963099 + L1MDa LINE L1 4407 4340 -2200 2108 93 4 8 chr3 197074059 197074327 -20962831 + AluSx SINE Alu 1 267 -45 886 221 48 171 chr3 197074327 197074364 -20962794 + L1MDa LINE L1 4339 4379 -2161 2351 92 0 10 chr3 197074512 197074826 -20962332 + AluY SINE Alu 1 311 0 2263 99 7 0 chr3 197075143 197075437 -20961721 + AluSx SINE Alu 3 298 -14 1988 106 50 0 chr3 197075500 197075782 -20961376 + AluSx SINE Alu 1 296 -16 2336 91 0 3 chr3 197076215 197076511 -20960647 + AluSx SINE Alu 1 295 -17 361 245 193 26 chr3 197077184 197077417 -20959741 + MER5C DNA MER1_type 1 272 -52 816 204 6 29 chr3 197077418 197077611 -20959547 - FRAM SINE Alu 0 176 1 1515 178 20 48 chr3 197077635 197077928 -20959230 + AluJo SINE Alu 1 285 -27 309 26 0 0 chr3 197077928 197077966 -20959192 + (CAT)n Simple_repeat Simple_repeat 2 39 0 940 108 114 0 chr3 197077966 197078031 -20959127 + L1MA4 LINE L1 6112 6168 -132 999 33 0 0 chr3 197078031 197078151 -20959007 + 5S rRNA rRNA 1 120 -1 2429 69 10 0 chr3 197078151 197078454 -20958704 + AluY SINE Alu 1 306 -5 940 108 114 0 chr3 197078454 197078553 -20958605 + L1MA4 LINE L1 6167 6296 -4 219 114 0 0 chr3 197078748 197078783 -20958375 + (CCCTAA)n Simple_repeat Simple_repeat 6 40 0 2375 92 0 10 chr3 197078817 197079122 -20958036 - AluSg SINE Alu -7 303 2 259 277 94 75 chr3 197079122 197079477 -20957681 + L2 LINE L2 2688 3059 -213 862 81 0 0 chr3 197079561 197079672 -20957486 - AluSg1 SINE Alu -198 111 1 211 194 0 0 chr3 197079694 197079730 -20957428 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 650 311 51 42 chr3 197079769 197080473 -20956685 - L2 LINE L2 -71 3242 2462 1647 144 68 0 chr3 197080499 197080837 -20956321 + AluJo SINE Alu 1 356 0 2312 92 10 0 chr3 197080960 197081264 -20955894 + AluSq SINE Alu 1 307 -6 206 139 0 0 chr3 197081279 197081315 -20955843 - L2 LINE L2 -981 2333 2298 261 0 0 0 chr3 197081523 197081552 -20955606 + (T)n Simple_repeat Simple_repeat 1 29 0 322 288 59 8 chr3 197081635 197081753 -20955405 + MIR SINE MIR 17 140 -122 1997 109 3 34 chr3 197081767 197082060 -20955098 + AluSg SINE Alu 1 284 -26 2362 144 42 5 chr3 197082065 197082467 -20954691 + L1MB5 LINE L1 5547 5963 -211 353 277 134 0 chr3 197082474 197082593 -20954565 - MIR SINE MIR -16 246 112 960 49 0 0 chr3 197082669 197082791 -20954367 + (TTC)n Simple_repeat Simple_repeat 2 123 0 2089 111 11 0 chr3 197082795 197083074 -20954084 - AluSx SINE Alu -30 282 1 414 141 0 0 chr3 197083075 197083139 -20954019 + AluJ/FRAM SINE Alu 216 279 -33 180 77 0 0 chr3 197083151 197083177 -20953981 + (GGGGA)n Simple_repeat Simple_repeat 2 27 0 22 70 0 0 chr3 197083730 197083773 -20953385 + AT_rich Low_complexity Low_complexity 1 43 0 512 276 121 11 chr3 197083990 197084164 -20952994 - MIR SINE MIR -55 207 15 235 309 63 0 chr3 197084177 197084303 -20952855 + MIR SINE MIR 47 180 -82 2246 125 0 0 chr3 197084897 197085208 -20951950 - AluSq SINE Alu -2 311 1 211 321 69 44 chr3 197085237 197085396 -20951762 + MIR SINE MIR 30 192 -70 244 280 25 96 chr3 197085408 197085468 -20951690 - MIR SINE MIR 0 262 199 2448 81 3 0 chr3 197085468 197085776 -20951382 - AluSp SINE Alu -4 309 1 244 280 25 96 chr3 197085776 197085872 -20951286 - MIR SINE MIR -63 199 117 465 259 7 35 chr3 197086386 197086529 -20950629 + MIR SINE MIR 49 187 -75 2060 121 10 10 chr3 197086531 197086828 -20950330 + AluSx SINE Alu 1 297 -15 560 200 57 0 chr3 197086877 197086982 -20950176 - AluJ SINE Alu -19 293 183 877 152 0 0 chr3 197086993 197087118 -20950040 - AluJ SINE Alu -187 125 1 1999 178 0 0 chr3 197087304 197087607 -20949551 - 7SLRNA srpRNA srpRNA -7 313 11 321 313 23 15 chr3 197087613 197087744 -20949414 - L2 LINE L2 -8 3264 3133 2000 145 3 3 chr3 197088200 197088497 -20948661 + AluSx SINE Alu 1 297 -15 2051 115 4 0 chr3 197088499 197088769 -20948389 + AluSx SINE Alu 1 271 -41 505 99 8 41 chr3 197088769 197088890 -20948268 + (TAAA)n Simple_repeat Simple_repeat 4 120 0 2327 94 0 0 chr3 197088942 197089228 -20947930 + AluSg SINE Alu 1 286 -24 29 0 0 0 chr3 197089228 197089257 -20947901 + AT_rich Low_complexity Low_complexity 1 29 0 2333 98 0 3 chr3 197089270 197089565 -20947593 + AluSx SINE Alu 5 298 -14 2540 56 0 7 chr3 197089566 197089871 -20947287 + AluY SINE Alu 2 304 -7 267 277 0 0 chr3 197089872 197089937 -20947221 + L1MC5 LINE L1 7169 7233 -728 22 0 0 0 chr3 197090079 197090101 -20947057 + AT_rich Low_complexity Low_complexity 1 22 0 235 294 88 19 chr3 197090150 197090189 -20946969 + L1MC5 LINE L1 7273 7308 -653 2486 55 3 16 chr3 197090189 197090496 -20946662 + AluSp SINE Alu 1 303 -10 235 294 88 19 chr3 197090496 197090616 -20946542 + L1MC5 LINE L1 7308 7443 -518 2090 111 37 0 chr3 197090972 197091269 -20945889 + AluSq SINE Alu 1 308 -5 650 335 102 45 chr3 197091408 197091596 -20945562 - L2 LINE L2 -337 2977 2801 2288 110 0 0 chr3 197091596 197091897 -20945261 - AluSx SINE Alu -11 301 1 650 335 102 45 chr3 197091897 197092258 -20944900 - L2 LINE L2 -513 2801 2367 2103 104 0 0 chr3 197092258 197092527 -20944631 + AluSg SINE Alu 40 308 -2 650 335 102 45 chr3 197092527 197092760 -20944398 - L2 LINE L2 -947 2367 2149 585 143 184 0 chr3 197092795 197092893 -20944265 + FAM SINE Alu 6 121 -64 427 341 14 9 chr3 197092920 197093131 -20944027 - L2 LINE L2 -1148 2166 1955 245 149 0 0 chr3 197093148 197093186 -20943972 + L1MB8 LINE L1 5638 5678 -500 1556 138 46 0 chr3 197093186 197093426 -20943732 + AluJb SINE Alu 1 251 -61 412 129 14 0 chr3 197093446 197093516 -20943642 + L1MB8 LINE L1 5652 5722 -456 1576 190 24 12 chr3 197093537 197093869 -20943289 + L1MB8 LINE L1 5837 6172 -6 1814 141 41 28 chr3 197093890 197094180 -20942978 + AluSx SINE Alu 1 294 -18 1828 161 0 28 chr3 197094569 197094886 -20942272 - AluJb SINE Alu 0 309 1 23 0 0 0 chr3 197094898 197094921 -20942237 + AT_rich Low_complexity Low_complexity 1 23 0 485 316 91 0 chr3 197095035 197095244 -20941914 - MIR SINE MIR -6 256 29 373 338 8 8 chr3 197095313 197095446 -20941712 - L2 LINE L2 -1 3271 3139 663 226 0 0 chr3 197095469 197095602 -20941556 + FLAM_C SINE Alu 1 133 0 2203 113 0 7 chr3 197095941 197096274 -20940884 - AluSx SINE Alu 0 312 1 365 218 145 0 chr3 197096323 197096447 -20940711 + MIR SINE MIR 94 235 -27 588 268 22 52 chr3 197096982 197097106 -20940052 + L1ME LINE L1 5585 5701 -420 1985 131 3 3 chr3 197097106 197097415 -20939743 - AluSp SINE Alu 0 309 1 588 268 22 52 chr3 197097415 197097520 -20939638 + L1ME LINE L1 5701 5808 -313 2333 100 3 0 chr3 197097622 197097922 -20939236 - AluSp SINE Alu -12 301 1 25 0 0 0 chr3 197098410 197098435 -20938723 + AT_rich Low_complexity Low_complexity 1 25 0 526 265 143 9 chr3 197098836 197099066 -20938092 - MIR SINE MIR 0 262 2 3292 91 35 8 chr3 197099155 197099343 -20937815 - L1PA14 LINE L1 -2 6159 5978 1722 131 4 0 chr3 197099343 197099588 -20937570 - AluSx SINE Alu -18 294 49 3292 91 35 8 chr3 197099588 197099881 -20937277 - L1PA14 LINE L1 -183 5978 5665 1633 123 186 0 chr3 197099881 197100134 -20937024 - AluSx SINE Alu -12 300 1 2287 171 7 2 chr3 197100134 197100555 -20936603 - L1P LINE L1 -3370 2776 2354 2052 131 16 0 chr3 197100555 197100860 -20936298 - AluSx SINE Alu -2 310 1 1296 179 0 13 chr3 197100982 197101206 -20935952 + AluJb SINE Alu 83 303 -9 1864 137 4 7 chr3 197101291 197101562 -20935596 + AluSx SINE Alu 22 291 -21 856 185 95 26 chr3 197101883 197102072 -20935086 - MER3 DNA MER1_type -4 205 4 1979 114 0 54 chr3 197102268 197102587 -20934571 + AluSg SINE Alu 1 303 0 217 282 128 0 chr3 197102678 197102756 -20934402 - L2 LINE L2 -189 3083 2996 387 185 0 0 chr3 197104031 197104096 -20933062 + AluSc SINE Alu 153 217 -82 471 152 65 0 chr3 197104096 197104188 -20932970 - AluJb SINE Alu -191 121 24 1933 161 7 7 chr3 197104336 197104641 -20932517 + AluSx SINE Alu 1 305 -7 1745 166 3 28 chr3 197104803 197105087 -20932071 - AluJo SINE Alu -30 282 6 2304 107 0 13 chr3 197105147 197105456 -20931702 + AluSq SINE Alu 1 305 -8 1740 158 19 16 chr3 197105608 197105918 -20931240 - AluJo SINE Alu -1 311 1 2178 111 0 13 chr3 197107110 197107417 -20929741 - AluSq SINE Alu -10 303 1 342 244 23 0 chr3 197107491 197107577 -20929581 - L2 LINE L2 0 3313 3226 2358 113 0 0 chr3 197108429 197108739 -20928419 - AluSg SINE Alu 0 310 1 316 164 14 14 chr3 197109904 197109977 -20927181 + CT-rich Low_complexity Low_complexity 2 74 0 468 190 21 106 chr3 197110381 197110423 -20926735 - MER5B DNA MER1_type -3 175 131 2418 64 3 3 chr3 197110423 197110721 -20926437 - AluY SINE Alu -13 298 1 468 190 21 106 chr3 197110721 197110820 -20926338 - MER5B DNA MER1_type -47 131 46 1396 195 0 57 chr3 197110908 197111038 -20926120 + AluJo SINE Alu 1 137 -175 2197 57 4 0 chr3 197111038 197111302 -20925856 - AluY SINE Alu -6 305 41 1396 195 0 57 chr3 197111302 197111469 -20925689 + AluJo SINE Alu 137 281 -31 198 0 0 0 chr3 197111474 197111496 -20925662 + (CAA)n Simple_repeat Simple_repeat 2 23 0 2058 135 0 0 chr3 197111606 197111902 -20925256 - AluSp SINE Alu -13 300 5 773 235 122 5 chr3 197112085 197112306 -20924852 - Charlie8 DNA MER1_type -2170 247 1 224 379 10 0 chr3 197112306 197112409 -20924749 + L2 LINE L2 2956 3059 -213 2208 117 3 0 chr3 197112637 197112937 -20924221 + AluSp SINE Alu 1 301 -12 2011 118 0 4 chr3 197112967 197113068 -20924090 + AluSq SINE Alu 32 132 -181 2502 81 0 3 chr3 197113068 197113377 -20923781 + AluSq SINE Alu 1 308 -5 2011 118 0 4 chr3 197113377 197113545 -20923613 + AluSq SINE Alu 132 300 -13 998 121 12 30 chr3 197113712 197113877 -20923281 + AluSc SINE Alu 135 296 -13 265 181 229 12 chr3 197113904 197113987 -20923171 - MIR SINE MIR -147 115 15 220 204 0 0 chr3 197114020 197114069 -20923089 + MIR SINE MIR 139 187 -75 210 241 60 12 chr3 197114185 197114268 -20922890 - MIR SINE MIR -169 93 7 397 236 221 19 chr3 197114407 197114615 -20922543 - MIR SINE MIR 0 262 13 2136 106 30 20 chr3 197115129 197115432 -20921726 + AluSq SINE Alu 1 306 -7 211 308 26 26 chr3 197115619 197115697 -20921461 - MIR SINE MIR -161 101 24 199 349 0 0 chr3 197115719 197115785 -20921373 - MIR SINE MIR -162 100 35 2391 72 10 0 chr3 197116922 197117102 -20920056 - AluY SINE Alu 0 311 125 207 0 0 0 chr3 197117102 197117125 -20920033 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2391 72 10 0 chr3 197117125 197117251 -20919907 - AluY SINE Alu -186 125 2 778 66 0 0 chr3 197117262 197117368 -20919790 - MER30B DNA MER1_type -80 110 5 2983 251 108 35 chr3 197117372 197118891 -20918267 + HAL1 LINE L1 822 2460 -47 1997 106 46 0 chr3 197118891 197119175 -20917983 - AluSg1 SINE Alu -12 297 1 2983 251 108 35 chr3 197119175 197119227 -20917931 + HAL1 LINE L1 2460 2507 0 373 206 176 55 chr3 197119263 197119428 -20917730 + MIR SINE MIR 28 212 -50 32 43 0 0 chr3 197119681 197119727 -20917431 + AT_rich Low_complexity Low_complexity 1 46 0 837 175 66 5 chr3 197120192 197120403 -20916755 - Charlie1 DNA MER1_type -188 2573 2350 2427 79 0 0 chr3 197120482 197120787 -20916371 - AluY SINE Alu -6 305 1 1021 234 47 60 chr3 197120795 197120969 -20916189 + Charlie1 DNA MER1_type 1934 2109 -652 2068 32 0 0 chr3 197120969 197121217 -20915941 - L1PA4 LINE L1 0 6155 5908 1021 234 47 60 chr3 197121217 197121443 -20915715 + Charlie1 DNA MER1_type 2109 2329 -432 805 113 196 0 chr3 197121527 197121660 -20915498 + AluSg/x SINE Alu 138 296 -14 229 67 0 0 chr3 197121961 197121991 -20915167 - U6 snRNA snRNA -77 30 1 775 177 8 0 chr3 197122050 197122180 -20914978 + AluJb SINE Alu 1 131 -181 317 343 100 73 chr3 197122555 197122925 -20914233 - L2 LINE L2 -9 3263 2884 2418 75 0 0 chr3 197123300 197123594 -20913564 - AluY SINE Alu -17 294 1 182 371 41 58 chr3 197123760 197123840 -20913318 - L2 LINE L2 -647 2667 2587 2285 99 3 16 chr3 197123840 197124154 -20913004 + AluSg SINE Alu 1 310 0 182 371 41 58 chr3 197124154 197124367 -20912791 - L2 LINE L2 -727 2587 2379 339 332 83 0 chr3 197124479 197124696 -20912462 + L1ME4a LINE L1 5547 5781 -2027 2039 133 0 23 chr3 197124757 197125099 -20912059 + AluSx SINE Alu 1 312 0 2151 123 0 3 chr3 197125467 197125769 -20911389 + AluSc SINE Alu 1 301 -8 22 0 0 0 chr3 197127072 197127094 -20910064 + AT_rich Low_complexity Low_complexity 1 22 0 542 315 103 13 chr3 197127098 197127524 -20909634 - LTR33 LTR ERVL 0 521 1 260 300 103 47 chr3 197127588 197127821 -20909337 + L2 LINE L2 2808 3053 -219 2784 13 0 0 chr3 197127959 197128293 -20908865 - AluYa5 SINE Alu 0 334 1 489 301 105 18 chr3 197128317 197128546 -20908612 - MIR SINE MIR 0 262 14 628 251 22 39 chr3 197129020 197129199 -20907959 - MIR SINE MIR 0 262 87 238 272 35 79 chr3 197129426 197129540 -20907618 - MIR SINE MIR -56 206 98 2088 104 11 4 chr3 197130031 197130340 -20906818 - AluSx SINE Alu 0 311 1 441 263 0 23 chr3 197130355 197130488 -20906670 - L1MC5 LINE L1 -100 7861 7732 2251 113 0 19 chr3 197130491 197130524 -20906634 - AluSp SINE Alu 0 313 281 240 59 0 0 chr3 197130524 197130558 -20906600 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2251 113 0 19 chr3 197130558 197130843 -20906315 - AluSp SINE Alu -32 281 1 1480 169 43 68 chr3 197130866 197131104 -20906054 - L1MA4 LINE L1 -9 6291 6065 1970 137 3 55 chr3 197131104 197131433 -20905725 - AluJo SINE Alu 0 312 1 1480 169 43 68 chr3 197131433 197131591 -20905567 - L1MA4 LINE L1 -235 6065 5905 435 200 27 9 chr3 197131827 197131937 -20905221 + L1ME4a LINE L1 5988 6099 -22 188 135 27 0 chr3 197133054 197133091 -20904067 + GA-rich Low_complexity Low_complexity 3 40 0 217 234 0 0 chr3 197133642 197133689 -20903469 - L2 LINE L2 0 3313 3267 378 293 67 7 chr3 197133700 197133850 -20903308 + MIR SINE MIR 91 249 -13 2324 81 0 0 chr3 197134046 197134361 -20902797 + AluY SINE Alu 1 311 0 258 284 27 14 chr3 197134560 197134634 -20902524 - MIR SINE MIR -167 95 21 206 255 0 0 chr3 197135476 197135523 -20901635 + CT-rich Low_complexity Low_complexity 1 47 0 214 365 36 15 chr3 197135910 197136047 -20901111 - MIR SINE MIR -63 145 5 381 130 8 15 chr3 197136238 197136477 -20900681 + AluJo SINE Alu 1 298 -4 2237 79 0 17 chr3 197136478 197136807 -20900351 + AluSp SINE Alu 1 324 0 494 265 126 0 chr3 197136829 197136980 -20900178 + MIR SINE MIR 84 253 -9 557 243 46 154 chr3 197137203 197137459 -20899699 + L2 LINE L2 2889 3171 -142 1786 170 6 43 chr3 197137459 197137783 -20899375 - AluJo SINE Alu 0 312 1 557 243 46 154 chr3 197137783 197137816 -20899342 + L2 LINE L2 3171 3133 -180 1283 56 0 0 chr3 197137816 197137976 -20899182 - L1MA1 LINE L1 -7 6295 6136 557 243 46 154 chr3 197137976 197138056 -20899102 + L2 LINE L2 3132 3219 -94 686 168 26 0 chr3 197138059 197138172 -20898986 + FLAM_C SINE Alu 1 116 -17 311 280 28 47 chr3 197138210 197138317 -20898841 + L2 LINE L2 3209 3313 0 2324 76 7 0 chr3 197138400 197138690 -20898468 - AluSp SINE Alu -21 292 1 184 311 108 0 chr3 197138842 197138916 -20898242 + L2 LINE L2 2674 2755 -559 1694 144 6 95 chr3 197139010 197139336 -20897822 - AluJb SINE Alu -15 297 1 401 181 0 0 chr3 197139340 197139412 -20897746 - MER94 DNA DNA -60 74 3 191 128 51 26 chr3 197139630 197139669 -20897489 - MER5B DNA MER1_type -17 161 122 1013 223 0 27 chr3 197139675 197139794 -20897364 + AluJo SINE Alu 3 115 -197 216 97 0 0 chr3 197139794 197139825 -20897333 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1013 223 0 27 chr3 197139825 197139929 -20897229 + AluJo SINE Alu 115 220 -92 230 204 0 0 chr3 197139929 197139978 -20897180 + Alu SINE Alu 85 133 0 1649 168 29 4 chr3 197139999 197140273 -20896885 + AluJb SINE Alu 1 281 -31 188 33 0 33 chr3 197140281 197140311 -20896847 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 241 261 0 29 chr3 197140313 197140382 -20896776 - MER5A DNA MER1_type -55 134 68 235 386 30 0 chr3 197140455 197140556 -20896602 + L2 LINE L2 3129 3232 -40 239 276 13 13 chr3 197140578 197140654 -20896504 - MIR SINE MIR 0 262 187 2421 84 0 0 chr3 197140667 197140966 -20896192 - AluSg SINE Alu -11 299 1 196 267 50 0 chr3 197141758 197141818 -20895340 + MIR SINE MIR 82 144 -64 2349 86 7 3 chr3 197141831 197142135 -20895023 - AluSp SINE Alu -8 305 1 215 283 0 0 chr3 197143281 197143334 -20893824 + CT-rich Low_complexity Low_complexity 1 53 0 234 261 17 0 chr3 197144526 197144597 -20892561 + GA-rich Low_complexity Low_complexity 1 72 0 545 284 40 72 chr3 197145405 197145627 -20891531 + MIR SINE MIR 20 234 -28 617 192 120 0 chr3 197145787 197145954 -20891204 - MER53 DNA DNA 0 189 3 180 111 0 0 chr3 197147755 197147782 -20889376 + (T)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr3 197149415 197149437 -20887721 + AT_rich Low_complexity Low_complexity 1 22 0 2302 88 33 36 chr3 197149706 197150070 -20887088 - L1PA14 LINE L1 0 6161 5799 354 270 0 10 chr3 197150493 197150593 -20886565 + MIR SINE MIR 66 164 -98 328 225 0 54 chr3 197150661 197150772 -20886386 + L1ME LINE L1 5730 5834 -328 2161 97 17 0 chr3 197150879 197151167 -20885991 + AluSp SINE Alu 1 293 -20 366 298 21 0 chr3 197151170 197151264 -20885894 - MIR SINE MIR -7 255 160 1732 142 83 3 chr3 197151268 197151592 -20885566 - MER46B DNA MER2_type -1 235 11 423 224 192 8 chr3 197151601 197151726 -20885432 - MIR SINE MIR -104 158 11 2343 70 0 3 chr3 197152015 197152316 -20884842 - AluY SINE Alu -11 300 1 1655 185 3 42 chr3 197152627 197152940 -20884218 + AluJo SINE Alu 5 305 -7 2280 95 14 0 chr3 197153962 197154258 -20882900 - AluSx SINE Alu -12 300 1 2572 80 0 0 chr3 197154884 197155197 -20881961 - AluSp SINE Alu 0 313 1 310 231 14 27 chr3 197155892 197156039 -20881119 + GA-rich Low_complexity Low_complexity 4 148 0 35 63 0 0 chr3 197156430 197156493 -20880665 + AT_rich Low_complexity Low_complexity 1 63 0 390 179 0 13 chr3 197157176 197157254 -20879904 - MSTB LTR MaLR -303 123 47 2474 66 0 0 chr3 197157256 197157558 -20879600 - AluY SINE Alu -9 302 1 242 329 25 0 chr3 197157688 197157767 -20879391 - MIR SINE MIR -180 82 2 2125 118 26 3 chr3 197157934 197158239 -20878919 + AluSx SINE Alu 1 312 0 385 283 54 63 chr3 197158324 197158529 -20878629 - MIR SINE MIR -6 256 54 356 232 0 16 chr3 197158935 197159018 -20878140 + MIR SINE MIR 8 88 -120 195 277 77 0 chr3 197159148 197159213 -20877945 + MIR SINE MIR 109 178 -84 526 260 68 48 chr3 197159363 197159763 -20877395 - L1ME4a LINE L1 -1 6120 5713 223 315 148 12 chr3 197159792 197159954 -20877204 + MER5A DNA MER1_type 5 188 -1 292 296 45 0 chr3 197159997 197160085 -20877073 + L2 LINE L2 3221 3312 -1 2473 55 0 16 chr3 197160251 197160560 -20876598 - AluY SINE Alu -7 304 1 225 283 11 11 chr3 197160644 197160736 -20876422 + (TA)n Simple_repeat Simple_repeat 2 93 0 198 402 49 0 chr3 197161379 197161461 -20875697 + L2 LINE L2 3141 3226 -46 2042 135 0 17 chr3 197162904 197163226 -20873932 + AluSx SINE Alu 1 317 0 345 236 30 82 chr3 197163226 197163493 -20873665 - L1M4 LINE L1 -2745 3401 3149 1920 84 4 4 chr3 197163511 197163762 -20873396 + AluY SINE Alu 49 299 -12 809 200 53 6 chr3 197164858 197165028 -20872130 + MER45A DNA AcHobo 1 178 0 511 214 107 59 chr3 197165047 197165234 -20871924 + MIR SINE MIR 35 230 -32 2245 98 7 0 chr3 197166755 197167051 -20870107 - AluSp SINE Alu -15 298 1 183 329 26 13 chr3 197167054 197167130 -20870028 + MIR SINE MIR 70 146 -62 2058 75 43 22 chr3 197167421 197167720 -20869438 - AluY SINE Alu 0 305 1 1581 118 30 15 chr3 197167778 197168069 -20869089 - AluSp SINE Alu 0 313 31 587 296 65 10 chr3 197168318 197168517 -20868641 - MIR SINE MIR -21 241 32 227 267 159 31 chr3 197169340 197169491 -20867667 + MIR SINE MIR 3 175 -61 270 172 52 0 chr3 197170044 197170102 -20867056 - L1MC/D LINE L1 -2052 5756 5696 2161 242 67 48 chr3 197170256 197170859 -20866299 - L1ME1 LINE L1 -43 6123 5533 1675 180 0 52 chr3 197170859 197171187 -20865971 - AluJo SINE Alu -1 311 1 207 0 0 0 chr3 197171194 197171217 -20865941 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 2161 242 67 48 chr3 197171217 197171228 -20865930 - L1ME1 LINE L1 -638 5528 5519 2154 118 0 0 chr3 197171228 197171515 -20865643 - AluSx SINE Alu -25 287 1 2161 242 67 48 chr3 197171515 197171712 -20865446 - L1ME1 LINE L1 -647 5519 5287 717 223 26 11 chr3 197171854 197172058 -20865100 - L1ME1 LINE L1 -917 5229 5022 267 157 0 0 chr3 197172520 197172571 -20864587 + (TG)n Simple_repeat Simple_repeat 2 52 0 237 281 0 0 chr3 197172606 197172663 -20864495 - L1MC/D LINE L1 -790 5376 5320 663 258 42 21 chr3 197172708 197172948 -20864210 - MER46C DNA MER2_type 0 338 94 328 234 43 11 chr3 197174496 197174590 -20862568 + L1ME LINE L1 5544 5640 -481 231 289 13 13 chr3 197174784 197174860 -20862298 + MIR3 SINE MIR 133 208 0 200 294 29 0 chr3 197175340 197175408 -20861750 + L3 LINE CR1 1302 1371 -206 199 329 61 0 chr3 197176066 197176148 -20861010 + L2 LINE L2 3186 3272 0 2114 138 0 0 chr3 197177324 197177677 -20859481 - AluSx SINE Alu 0 353 1 181 69 10 98 chr3 197178142 197178244 -20858914 + (TA)n Simple_repeat Simple_repeat 1 93 0 261 0 0 0 chr3 197178263 197178292 -20858866 + (TG)n Simple_repeat Simple_repeat 2 30 0 375 322 43 9 chr3 197178292 197178407 -20858751 + L2 LINE L2 3154 3272 0 392 95 0 16 chr3 197178979 197179042 -20858116 + (GAAAA)n Simple_repeat Simple_repeat 2 63 0 312 263 137 63 chr3 197179623 197179828 -20857330 + L2 LINE L2 2309 2528 -786 643 303 186 20 chr3 197180251 197180805 -20856353 - L2 LINE L2 -957 2357 1712 345 262 58 19 chr3 197181034 197181137 -20856021 + 7SK RNA RNA 13 119 -74 331 221 58 35 chr3 197181181 197181267 -20855891 - L2 LINE L2 -4 3268 3181 444 274 20 20 chr3 197181497 197181650 -20855508 - L1ME LINE L1 -461 5660 5508 296 332 62 33 chr3 197181665 197181725 -20855433 - L2 LINE L2 -1639 1675 1618 2336 128 0 0 chr3 197181725 197182037 -20855121 + AluSx SINE Alu 1 312 0 296 332 62 33 chr3 197182037 197182313 -20854845 - L2 LINE L2 -1696 1618 1329 1147 14 22 0 chr3 197183420 197183558 -20853600 + L1PA2 LINE L1 6015 6155 0 27 0 0 0 chr3 197183571 197183598 -20853560 + AT_rich Low_complexity Low_complexity 1 27 0 605 115 0 0 chr3 197183648 197183744 -20853414 - L1MA1 LINE L1 0 6302 6207 578 44 278 0 chr3 197183850 197183940 -20853218 - L1PA8 LINE L1 -14 6158 6044 197 225 0 0 chr3 197185230 197185270 -20851888 - L2 LINE L2 0 3272 3233 271 264 28 0 chr3 197185944 197186016 -20851142 - MIR SINE MIR -1 261 188 25 31 0 0 chr3 197186975 197187007 -20850151 + AT_rich Low_complexity Low_complexity 1 32 0 2414 78 7 0 chr3 197189009 197189305 -20847853 + AluSp SINE Alu 1 298 -15 652 167 9 0 chr3 197189698 197189806 -20847352 - AluJo/FRAM SINE Alu -20 292 184 2465 61 0 3 chr3 197189807 197190118 -20847040 + AluY SINE Alu 1 310 -1 183 129 0 0 chr3 197190309 197190340 -20846818 + (CAG)n Simple_repeat Simple_repeat 1 31 0 5698 136 32 15 chr3 197190536 197190843 -20846315 - Tigger3b DNA MER2_type -1967 1061 760 1753 141 10 43 chr3 197190843 197191142 -20846016 + AluSx SINE Alu 9 297 -15 5698 136 32 15 chr3 197191142 197191878 -20845280 - Tigger3b DNA MER2_type -2268 760 1 2044 102 29 0 chr3 197192042 197192344 -20844814 - AluSp SINE Alu 0 311 2 978 191 26 39 chr3 197192599 197192921 -20844237 - L1MC5 LINE L1 -1045 6997 6650 228 314 38 13 chr3 197193144 197193303 -20843855 - L1MC4a LINE L1 -1542 6266 6104 1988 130 169 5 chr3 197193448 197193816 -20843342 + MSTA LTR MaLR 1 428 0 749 245 47 73 chr3 197193912 197194295 -20842863 - HAL1 LINE L1 -430 2077 1705 1947 124 3 41 chr3 197194637 197194951 -20842207 - AluSg SINE Alu -6 304 3 22 0 0 0 chr3 197195004 197195026 -20842132 + AT_rich Low_complexity Low_complexity 1 22 0 909 102 114 0 chr3 197195208 197195307 -20841851 - L1MA4 LINE L1 -4 6296 6210 2426 69 7 0 chr3 197195307 197195611 -20841547 - AluY SINE Alu -5 306 1 996 33 0 0 chr3 197195611 197195731 -20841427 - 5S rRNA rRNA -1 120 1 909 102 114 0 chr3 197195731 197195796 -20841362 - L1MA4 LINE L1 -89 6211 6112 309 26 0 0 chr3 197195796 197195834 -20841324 + (ATG)n Simple_repeat Simple_repeat 2 39 0 997 250 17 45 chr3 197195834 197196126 -20841032 - AluJb SINE Alu -17 285 2 2186 89 31 0 chr3 197196852 197197145 -20840013 - AluSx SINE Alu -10 302 1 4572 151 28 12 chr3 197198419 197198630 -20838528 - L1MA6 LINE L1 -23 6277 6071 298 47 47 0 chr3 197198630 197198673 -20838485 + AluY SINE Alu 249 293 -7 4572 151 28 12 chr3 197198673 197199885 -20837273 - L1MA6 LINE L1 -229 6071 4837 2452 95 3 0 chr3 197199912 197200218 -20836940 + AluSx SINE Alu 1 307 -5 259 288 189 0 chr3 197200296 197200407 -20836751 - L2 LINE L2 0 3313 3182 2349 102 0 0 chr3 197200769 197201073 -20836085 - AluSx SINE Alu -4 308 5 1157 151 0 0 chr3 197201408 197201574 -20835584 - AluSg/x SINE Alu -26 286 121 1373 116 57 13 chr3 197201590 197201846 -20835312 - L1M4 LINE L1 -503 5675 5410 2294 114 0 3 chr3 197201939 197202246 -20834912 - AluSq SINE Alu -7 306 1 221 360 11 11 chr3 197202679 197202768 -20834390 + L3 LINE CR1 223 311 -1266 503 308 80 17 chr3 197202923 197203160 -20833998 + L3 LINE CR1 589 840 -737 537 286 71 0 chr3 197203166 197203334 -20833824 + MIR SINE MIR 81 260 -2 1184 128 35 13 chr3 197204006 197204232 -20832926 + MLT1B LTR MaLR 1 231 -159 1114 187 56 82 chr3 197204232 197204642 -20832516 - MLT1A2 LTR MaLR 0 374 4 638 182 174 0 chr3 197204645 197204777 -20832381 + MLT1B LTR MaLR 227 381 -9 262 233 55 41 chr3 197206054 197206127 -20831031 - MIR SINE MIR -70 192 119 539 197 66 66 chr3 197206281 197206479 -20830679 + LTR16A1 LTR ERVL 259 456 -1 535 269 11 38 chr3 197206623 197206809 -20830349 - MIR SINE MIR -26 236 56 385 268 57 0 chr3 197207067 197207190 -20829968 + MER94 DNA DNA 1 130 -4 2246 112 0 31 chr3 197207551 197207873 -20829285 - AluSx SINE Alu 0 312 1 35 24 0 0 chr3 197208393 197208435 -20828723 + AT_rich Low_complexity Low_complexity 1 42 0 2209 82 0 4 chr3 197208672 197209062 -20828096 - AluSg SINE Alu 0 391 3 580 329 39 22 chr3 197209085 197209316 -20827842 + MIR SINE MIR 5 239 -23 242 160 20 0 chr3 197209581 197209631 -20827527 + CT-rich Low_complexity Low_complexity 1 51 0 253 253 137 0 chr3 197209651 197209746 -20827412 + MIR SINE MIR 123 230 -32 697 192 0 0 chr3 197209777 197209897 -20827261 - FLAM_C SINE Alu -23 120 1 256 155 35 0 chr3 197210014 197210072 -20827086 - L1ME4a LINE L1 -4 6117 6058 355 298 139 26 chr3 197211164 197211315 -20825843 + L2 LINE L2 3103 3270 -2 525 152 0 0 chr3 197212548 197212647 -20824511 + L1PA13 LINE L1 6065 6163 0 391 287 132 60 chr3 197213121 197213355 -20823803 - MIR SINE MIR -1 261 16 240 208 62 31 chr3 197213428 197213524 -20823634 - L1ME LINE L1 -298 5823 5725 21 0 0 0 chr3 197213716 197213737 -20823421 + AT_rich Low_complexity Low_complexity 1 21 0 203 267 0 0 chr3 197214676 197214721 -20822437 + L2 LINE L2 3257 3301 -12 184 398 0 12 chr3 197215694 197215777 -20821381 + MIR3 SINE MIR 74 155 -53 181 296 0 0 chr3 197216008 197216052 -20821106 + L2 LINE L2 3150 3193 -79 659 255 119 14 chr3 197216287 197216504 -20820654 - L1MC4a LINE L1 -302 5819 5627 240 35 0 0 chr3 197216504 197216533 -20820625 + (TG)n Simple_repeat Simple_repeat 1 29 0 659 255 119 14 chr3 197216533 197216683 -20820475 - L1MC4a LINE L1 -494 5627 5494 411 119 0 0 chr3 197216827 197216894 -20820264 + (GA)n Simple_repeat Simple_repeat 2 68 0 250 297 18 72 chr3 197217327 197217397 -20819761 - MER5B DNA MER1_type -73 105 42 288 0 0 0 chr3 197217397 197217429 -20819729 + (CA)n Simple_repeat Simple_repeat 2 33 0 250 297 18 72 chr3 197217429 197217469 -20819689 - MER5B DNA MER1_type -136 42 1 1725 234 3 3 chr3 197217790 197218153 -20819005 - MLT1A1 LTR MaLR -2 363 1 412 248 24 24 chr3 197218153 197218278 -20818880 - MER94 DNA DNA -4 130 6 1118 299 119 12 chr3 197219395 197219849 -20817309 - L2 LINE L2 -1 3312 2772 1546 180 54 17 chr3 197219849 197220143 -20817015 + AluJo SINE Alu 1 305 -7 1118 299 119 12 chr3 197220143 197220288 -20816870 - L2 LINE L2 -541 2772 2644 376 203 13 0 chr3 197220294 197220373 -20816785 + MLT1A1 LTR MaLR 1 80 -285 6788 74 10 0 chr3 197220374 197221355 -20815803 + L1PA8 LINE L1 5230 6219 0 1220 181 43 76 chr3 197221355 197221659 -20815499 + MLT1A1 LTR MaLR 72 365 0 1912 247 51 15 chr3 197221661 197222207 -20814951 - L2 LINE L2 -639 2675 2110 252 238 29 9 chr3 197222706 197222811 -20814347 + (TA)n Simple_repeat Simple_repeat 1 107 0 595 281 27 7 chr3 197224078 197224256 -20812902 + MIR SINE MIR 6 186 -65 410 251 94 91 chr3 197224758 197225097 -20812061 - L1ME3 LINE L1 -211 5934 5595 851 278 83 15 chr3 197225098 197225425 -20811733 - L2 LINE L2 -5 3308 2960 1213 281 67 30 chr3 197225429 197226492 -20810666 - L1ME3 LINE L1 -554 5593 4488 1998 299 83 35 chr3 197226587 197227530 -20809628 - L1ME3 LINE L1 -1826 4303 3407 2471 50 20 0 chr3 197227530 197227831 -20809327 - AluY SINE Alu -4 307 1 1998 299 83 35 chr3 197227831 197227986 -20809172 - L1ME3 LINE L1 -2722 3407 3261 2510 108 16 3 chr3 197227986 197228373 -20808785 - L1MA3 LINE L1 0 6305 5914 1998 299 83 35 chr3 197228373 197229339 -20807819 - L1ME3 LINE L1 -2868 3261 2139 1037 295 147 44 chr3 197229863 197230122 -20807036 - L1ME3 LINE L1 -4732 1578 1347 1729 155 0 62 chr3 197230122 197230444 -20806714 - AluJo SINE Alu -8 304 3 1037 295 147 44 chr3 197230444 197231580 -20805578 - L1ME3 LINE L1 -4963 1347 67 2353 95 7 0 chr3 197232024 197232330 -20804828 - AluSp SINE Alu -5 308 1 1204 254 166 29 chr3 197232356 197232875 -20804283 + Charlie7 DNA MER1_type 99 688 -1924 849 188 50 12 chr3 197234126 197234286 -20802872 + FRAM SINE Alu 1 166 0 195 261 22 0 chr3 197234618 197234664 -20802494 + L2 LINE L2 3219 3265 -7 251 235 29 0 chr3 197234936 197235004 -20802154 + CT-rich Low_complexity Low_complexity 2 71 0 25 31 0 0 chr3 197236690 197236722 -20800436 + AT_rich Low_complexity Low_complexity 1 32 0 2315 210 71 65 chr3 197237070 197237942 -20799216 + L1MC5 LINE L1 7034 7910 -51 242 247 151 43 chr3 197238020 197238113 -20799045 + MER63 DNA MER1_type 5 733 -103 348 24 0 0 chr3 197238563 197238604 -20798554 + (TG)n Simple_repeat Simple_repeat 2 42 0 1773 161 3 14 chr3 197238604 197238891 -20798267 - AluJb SINE Alu -28 284 1 1075 261 142 61 chr3 197238992 197239597 -20797561 + Tigger8 DNA MER2_type 4 657 -9 965 237 14 0 chr3 197239639 197239858 -20797300 + LTR33 LTR ERVL 287 508 -13 1590 70 0 0 chr3 197240025 197240225 -20796933 - AluY SINE Alu -6 305 106 257 298 48 90 chr3 197241124 197241370 -20795788 + MIR SINE MIR 6 235 -27 357 136 0 0 chr3 197241499 197241565 -20795593 + (TC)n Simple_repeat Simple_repeat 1 66 0 673 138 28 0 chr3 197242277 197242386 -20794772 + MLT1B LTR MaLR 1 112 -278 8827 142 30 14 chr3 197242387 197244883 -20792275 + L1MA4 LINE L1 3760 6300 0 543 133 0 0 chr3 197244900 197244983 -20792175 + MLT1B LTR MaLR 97 179 -211 * 1055 197 62 0 chr3 197244980 197245173 -20791985 + MER21B LTR ERV1 288 492 -371 976 192 10 20 chr3 197245276 197245474 -20791684 + MLT1B LTR MaLR 195 390 0 712 243 3 7 chr3 197245477 197245655 -20791503 + MLT1B-int LTR MaLR 3 182 -1214 548 159 0 0 chr3 197245629 197245717 -20791441 + MLT1B-int LTR MaLR 293 380 -991 * 2108 117 10 7 chr3 197245717 197246024 -20791134 + AluSx SINE Alu 1 308 -4 507 186 0 26 chr3 197246064 197246177 -20790981 + MLT1B-int LTR MaLR 369 478 -893 1370 193 39 23 chr3 197246232 197246537 -20790621 + MLT1A1 LTR MaLR 53 362 -3 1736 139 0 28 chr3 197247096 197247383 -20789775 + AluSx SINE Alu 34 312 0 437 306 46 0 chr3 197250126 197250234 -20786924 + L2 LINE L2 3160 3272 0 224 225 0 0 chr3 197250316 197250356 -20786802 + (TATG)n Simple_repeat Simple_repeat 3 42 0 219 225 54 9 chr3 197251834 197251945 -20785213 + (TA)n Simple_repeat Simple_repeat 1 116 0 221 196 18 0 chr3 197253026 197253082 -20784076 + CT-rich Low_complexity Low_complexity 4 60 0 444 251 153 60 chr3 197254176 197254411 -20782747 + MIR SINE MIR 6 262 0 490 310 159 4 chr3 197255768 197255994 -20781164 - MIR SINE MIR 0 262 2 526 305 106 31 chr3 197257358 197257650 -20779508 + L2 LINE L2 2985 3298 -15 2415 216 48 2 chr3 197257825 197258303 -20778855 + MLT1F LTR MaLR 42 541 -1 391 133 0 0 chr3 197259043 197259103 -20778055 + AluJ/FRAM SINE Alu 232 291 -11 395 298 71 0 chr3 197259627 197259768 -20777390 + MIR SINE MIR 56 206 -56 381 134 15 0 chr3 197259788 197259855 -20777303 - L1MA1 LINE L1 -4 6298 6231 241 297 70 8 chr3 197259989 197260117 -20777041 - L2 LINE L2 -152 3161 3026 286 321 0 12 chr3 197260158 197260242 -20776916 - L2 LINE L2 0 3313 3231 1688 160 11 7 chr3 197260244 197260561 -20776597 + AluJo SINE Alu 1 318 0 2261 198 67 41 chr3 197260562 197261128 -20776030 + L1MC3 LINE L1 6241 6821 -964 855 107 0 8 chr3 197261150 197261272 -20775886 - AluJ SINE Alu 0 312 192 983 122 0 14 chr3 197261277 197261416 -20775742 - AluJ SINE Alu -175 137 1 3562 196 65 26 chr3 197261417 197262324 -20774834 + L1MC3 LINE L1 6819 7760 -25 218 313 89 69 chr3 197262347 197262651 -20774507 - L2 LINE L2 -69 3244 2935 520 320 90 15 chr3 197262760 197262960 -20774198 + MIR SINE MIR 46 260 -2 204 324 102 19 chr3 197263507 197263615 -20773543 - MIR3 SINE MIR -5 203 87 183 293 26 86 chr3 197264872 197264988 -20772170 - MIR SINE MIR -108 154 46 2019 124 63 30 chr3 197265882 197266245 -20770913 - THE1C LTR MaLR 0 375 1 270 224 0 15 chr3 197267078 197267145 -20770013 - MIR SINE MIR -17 245 180 2041 145 10 10 chr3 197267272 197267583 -20769575 - AluSx SINE Alu -1 311 1 5795 131 15 14 chr3 197267732 197269043 -20768115 + L1PB1 LINE L1 4844 6151 0 1755 154 57 7 chr3 197270568 197270848 -20766310 + AluJb SINE Alu 1 294 -18 352 285 179 7 chr3 197271031 197271182 -20765976 - MIR SINE MIR -21 241 65 9597 91 2 0 chr3 197271905 197274034 -20763124 + L1PA7 LINE L1 4025 6151 -3 303 259 61 61 chr3 197274550 197274681 -20762477 - MIR SINE MIR -46 216 86 6185 141 63 22 chr3 197275199 197276382 -20760776 + Tigger3b DNA MER2_type 1 1231 0 391 198 22 0 chr3 197276941 197277032 -20760126 + L1MD3 LINE L1 7898 7990 -5 345 235 24 12 chr3 197277057 197277142 -20760016 + MLT1D LTR MaLR 1 86 -419 881 235 76 67 chr3 197277358 197277715 -20759443 - MSTD LTR MaLR 0 396 6 991 227 29 10 chr3 197277745 197278032 -20759126 + MLT1D LTR MaLR 205 558 -9 341 307 43 25 chr3 197278033 197278196 -20758962 + L1ME LINE L1 5318 5483 -683 27 62 0 0 chr3 197278345 197278393 -20758765 + AT_rich Low_complexity Low_complexity 1 48 0 2085 135 6 19 chr3 197278634 197278945 -20758213 + AluSx SINE Alu 1 307 -5 184 357 36 0 chr3 197279366 197279422 -20757736 - L2 LINE L2 -56 3216 3159 2168 116 9 3 chr3 197279605 197279940 -20757218 + THE1A LTR MaLR 19 355 0 223 282 32 58 chr3 197280012 197280168 -20756990 - L2 LINE L2 -1482 1832 1681 214 359 0 43 chr3 197280291 197280383 -20756775 + MIR SINE MIR 59 146 -116 2089 112 3 40 chr3 197281788 197282091 -20755067 + AluSg SINE Alu 1 292 -18 351 197 14 0 chr3 197282119 197282190 -20754968 + AluS SINE Alu 227 298 -3 2167 274 99 39 chr3 197282348 197283442 -20753716 - L2 LINE L2 -33 3280 2121 184 268 0 0 chr3 197283696 197283737 -20753421 - MER5A DNA MER1_type -148 41 1 1966 85 0 0 chr3 197283930 197284207 -20752951 + AluY SINE Alu 37 313 0 23 33 0 0 chr3 197284973 197285003 -20752155 + AT_rich Low_complexity Low_complexity 1 30 0 194 413 50 31 chr3 197285163 197285323 -20751835 - L2 LINE L2 -130 3142 2980 188 271 0 86 chr3 197286736 197286806 -20750352 + L2 LINE L2 3208 3271 -1 489 279 102 63 chr3 197286921 197287414 -20749744 + L2 LINE L2 2532 3055 -217 303 299 66 18 chr3 197289652 197289819 -20747339 - MIR SINE MIR 0 262 88 267 326 10 10 chr3 197291341 197291439 -20745719 - MIR3 SINE MIR -44 164 67 421 331 89 0 chr3 197292191 197292348 -20744810 - MIR SINE MIR -87 175 5 1729 146 3 75 chr3 197294261 197294582 -20742576 + AluJb SINE Alu 1 298 -14 2515 68 0 0 chr3 197294752 197295060 -20742098 + AluY SINE Alu 1 308 -3 205 254 85 0 chr3 197295168 197295227 -20741931 - MIR SINE MIR -16 246 183 419 256 246 15 chr3 197295246 197295449 -20741709 + MIR SINE MIR 13 262 0 225 269 60 15 chr3 197295442 197295509 -20741649 - MIR SINE MIR -74 188 119 * 218 103 0 0 chr3 197295541 197295570 -20741588 + MER5A DNA MER1_type 48 76 -113 1229 128 6 11 chr3 197295580 197295759 -20741399 - AluJb SINE Alu -6 306 129 296 271 85 17 chr3 197295762 197295880 -20741278 + MER5A DNA MER1_type 61 186 -3 188 380 127 0 chr3 197295880 197295951 -20741207 - MIR SINE MIR -162 100 20 23 0 0 0 chr3 197296242 197296265 -20740893 + AT_rich Low_complexity Low_complexity 1 23 0 1420 206 7 7 chr3 197297307 197297583 -20739575 + AluJb SINE Alu 1 276 -36 1026 116 6 17 chr3 197297590 197297771 -20739387 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 2437 255 64 5 chr3 197299738 197300361 -20736797 + MER69 DNA AcHobo 1 660 -1866 209 288 96 0 chr3 197300418 197300491 -20736667 + MIR SINE MIR 105 184 -78 428 294 131 31 chr3 197300500 197300660 -20736498 - MIR SINE MIR -49 213 38 315 49 0 0 chr3 197300856 197300897 -20736261 + (TC)n Simple_repeat Simple_repeat 2 42 0 180 111 0 0 chr3 197301081 197301108 -20736050 + (TAAAA)n Simple_repeat Simple_repeat 5 31 0 234 226 75 0 chr3 197301401 197301454 -20735704 - L2 LINE L2 0 3313 3257 371 306 113 36 chr3 197301566 197301718 -20735440 - L1ME LINE L1 -298 5823 5684 423 0 0 0 chr3 197301718 197301765 -20735393 + (TA)n Simple_repeat Simple_repeat 1 47 0 371 306 113 36 chr3 197301765 197301887 -20735271 - L1ME LINE L1 -437 5684 5528 247 268 0 0 chr3 197301955 197302026 -20735132 - L1P5 LINE L1 -701 5455 5385 393 293 129 52 chr3 197302185 197302417 -20734741 + MIR SINE MIR 10 259 -3 1774 143 0 60 chr3 197302444 197302758 -20734400 + AluSx SINE Alu 2 296 -16 2187 119 7 0 chr3 197302760 197303062 -20734096 + AluSx SINE Alu 1 304 -8 1230 181 9 4 chr3 197303215 197303447 -20733711 + L1MB7 LINE L1 5936 6168 -16 182 167 77 103 chr3 197303489 197303567 -20733591 + MIR3 SINE MIR 132 207 -1 22 0 0 0 chr3 197304212 197304234 -20732924 + AT_rich Low_complexity Low_complexity 1 22 0 221 75 25 0 chr3 197305378 197305418 -20731740 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 332 269 156 38 chr3 197305426 197305586 -20731572 + MIR SINE MIR 44 222 -40 557 309 11 28 chr3 197306739 197306920 -20730238 + MIR3 SINE MIR 23 200 -8 498 358 12 6 chr3 197307647 197307820 -20729338 + MIR3 SINE MIR 30 203 -5 191 242 50 61 chr3 197308069 197308168 -20728990 + L2 LINE L2 2662 2759 -555 1269 284 52 46 chr3 197308176 197308767 -20728391 + MLT1L LTR MaLR 3 597 -18 425 343 117 15 chr3 197308877 197309142 -20728016 + L2 LINE L2 2978 3269 -3 183 229 237 68 chr3 197310290 197310408 -20726750 - L2 LINE L2 -3 3310 3173 232 259 327 0 chr3 197312093 197312203 -20724955 + MIR3 SINE MIR 20 156 -52 365 310 121 35 chr3 197312216 197312390 -20724768 + MIR SINE MIR 47 235 -27 2214 65 0 68 chr3 197312599 197312909 -20724249 - AluY SINE Alu -22 289 1 210 71 0 0 chr3 197313470 197313498 -20723660 + (A)n Simple_repeat Simple_repeat 1 28 0 295 326 8 68 chr3 197313516 197313648 -20723510 - MIR3 SINE MIR -7 201 78 224 304 170 22 chr3 197313649 197313784 -20723374 + MIR3 SINE MIR 3 157 -51 189 250 0 18 chr3 197313823 197313879 -20723279 - MIR3 SINE MIR -144 64 10 488 218 105 0 chr3 197314144 197314277 -20722881 + MER69 DNA AcHobo 1 147 -1079 1876 139 4 4 chr3 197314317 197314598 -20722560 + AluSq SINE Alu 1 281 -32 224 167 0 37 chr3 197314678 197314732 -20722426 + CT-rich Low_complexity Low_complexity 5 56 0 2167 64 61 0 chr3 197314768 197315048 -20722110 - AluSp SINE Alu -13 300 4 262 140 0 0 chr3 197315136 197315186 -20721972 - L1MA4A LINE L1 -3 6300 6251 877 179 1 0 chr3 197315186 197315379 -20721779 - AluJb SINE Alu -13 299 129 1708 139 0 0 chr3 197315379 197315623 -20721535 + AluSx SINE Alu 38 281 -31 303 213 42 153 chr3 197316270 197316411 -20720747 + MER5A DNA MER1_type 18 165 -13 485 254 33 28 chr3 197317390 197317454 -20719704 - L1MC4a LINE L1 -1800 6008 5946 1866 179 0 22 chr3 197317454 197317772 -20719386 - AluJo SINE Alu -1 311 1 485 254 33 28 chr3 197317772 197317920 -20719238 - L1MC4a LINE L1 -1862 5946 5795 5294 154 28 8 chr3 197319000 197319848 -20717310 + MER6 DNA MER2_type 1 865 0 1662 152 28 28 chr3 197320023 197320312 -20716846 + AluJo SINE Alu 1 289 -23 204 40 0 0 chr3 197320575 197320600 -20716558 + (TG)n Simple_repeat Simple_repeat 1 25 0 263 252 99 8 chr3 197320824 197320955 -20716203 + L1ME4a LINE L1 5974 6116 -5 2044 125 0 0 chr3 197320991 197321278 -20715880 + AluSx SINE Alu 24 310 -2 624 302 10 36 chr3 197321422 197321614 -20715544 - MIR3 SINE MIR -7 201 15 186 133 0 0 chr3 197321622 197321652 -20715506 + (TTTC)n Simple_repeat Simple_repeat 4 33 0 898 92 0 17 chr3 197322089 197322209 -20714949 + AluSp/q SINE Alu 176 293 -20 2337 81 0 14 chr3 197322322 197322619 -20714539 + AluSg SINE Alu 1 293 -17 2510 71 0 0 chr3 197322621 197322932 -20714226 + AluY SINE Alu 1 311 0 701 230 0 0 chr3 197323645 197323771 -20713387 + FLAM_C SINE Alu 2 127 -6 202 217 43 0 chr3 197323774 197323820 -20713338 + GA-rich Low_complexity Low_complexity 4 51 0 256 190 177 44 chr3 197323828 197323986 -20713172 - L1ME4a LINE L1 -42 6079 5901 2315 110 0 0 chr3 197323989 197324288 -20712870 - AluSg SINE Alu -9 301 3 288 0 0 0 chr3 197324500 197324532 -20712626 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1922 112 3 42 chr3 197324536 197324822 -20712336 - AluSx SINE Alu -37 275 1 357 256 197 7 chr3 197324850 197324987 -20712171 - MIR SINE MIR -64 198 36 2149 114 3 0 chr3 197325185 197325474 -20711684 + AluSp SINE Alu 1 290 -23 1210 211 32 48 chr3 197325781 197325846 -20711312 + L1ME3A LINE L1 5765 5830 -340 1758 171 4 0 chr3 197325846 197326127 -20711031 - AluJb SINE Alu -30 282 1 1210 211 32 48 chr3 197326127 197326435 -20710723 + L1ME3A LINE L1 5830 6157 -13 800 226 28 91 chr3 197326691 197326816 -20710342 - L1M4 LINE L1 -2629 3517 3386 2208 102 0 0 chr3 197326816 197327145 -20710013 + AluSx SINE Alu 1 329 0 800 226 28 91 chr3 197327145 197327412 -20709746 - L1M4 LINE L1 -2760 3386 3149 1922 84 4 4 chr3 197327430 197327681 -20709477 + AluY SINE Alu 49 299 -12 260 338 44 37 chr3 197327793 197327929 -20709229 - L3 LINE CR1 -1 1576 1440 2215 107 10 0 chr3 197327951 197328259 -20708899 - AluSp SINE Alu -2 311 1 1580 141 6 100 chr3 197328346 197328665 -20708493 + AluJo SINE Alu 1 289 -23 577 263 78 19 chr3 197328710 197328915 -20708243 + MIR SINE MIR 11 227 -35 2066 95 4 0 chr3 197328985 197329258 -20707900 + AluSg SINE Alu 37 310 0 287 123 0 35 chr3 197329500 197329557 -20707601 + Alu SINE Alu 248 302 0 1510 208 0 7 chr3 197329566 197329874 -20707284 + AluJo SINE Alu 2 307 -5 2360 94 0 0 chr3 197329948 197330247 -20706911 - AluSx SINE Alu -13 299 1 24 53 0 0 chr3 197330417 197330455 -20706703 + AT_rich Low_complexity Low_complexity 1 38 0 322 295 31 8 chr3 197330505 197330634 -20706524 - L1ME LINE L1 -341 5780 5649 321 225 41 33 chr3 197330666 197330846 -20706312 - L3 LINE CR1 -593 984 750 2139 103 7 17 chr3 197331348 197331650 -20705508 - AluSq SINE Alu -14 299 1 284 302 35 35 chr3 197331667 197331783 -20705375 - L2 LINE L2 -9 3263 3148 256 258 32 0 chr3 197332021 197332083 -20705075 + L2 LINE L2 3193 3256 -16 2185 105 0 7 chr3 197332284 197332578 -20704580 + AluSg SINE Alu 2 293 -17 807 174 0 28 chr3 197333442 197333586 -20703572 - FLAM_C SINE Alu -2 141 2 1140 189 83 53 chr3 197333588 197333781 -20703377 + L1MC4 LINE L1 7695 7904 -138 1916 112 54 0 chr3 197333781 197334058 -20703100 - AluSp SINE Alu -21 292 1 1140 189 83 53 chr3 197334058 197334202 -20702956 + L1MC4 LINE L1 7904 8042 0 512 312 77 8 chr3 197334470 197334704 -20702454 + MIR SINE MIR 12 261 -1 288 299 39 125 chr3 197334759 197335248 -20701910 - L2 LINE L2 0 3272 2826 1386 171 78 39 chr3 197335326 197335497 -20701661 + AluJo SINE Alu 1 189 -123 2504 33 3 10 chr3 197335497 197335796 -20701362 - AluY SINE Alu -14 297 1 1386 171 78 39 chr3 197335796 197335905 -20701253 + AluJo SINE Alu 189 292 -20 2436 74 7 0 chr3 197336299 197336595 -20700563 - AluSp SINE Alu -15 298 1 2518 62 0 0 chr3 197336864 197337173 -20699985 + AluY SINE Alu 2 310 -1 208 220 0 0 chr3 197337287 197337337 -20699821 + CT-rich Low_complexity Low_complexity 2 51 0 2309 60 0 3 chr3 197337670 197337986 -20699172 + AluY SINE Alu 1 315 0 230 286 58 36 chr3 197339229 197339265 -20697893 + L1MC/D LINE L1 5566 5600 -557 2284 92 0 29 chr3 197339265 197339579 -20697579 + AluSx SINE Alu 1 305 -7 230 286 58 36 chr3 197339579 197339664 -20697494 + L1MC/D LINE L1 5600 5689 -468 1899 152 3 0 chr3 197339800 197339814 -20697344 - AluSq SINE Alu -10 303 291 234 0 0 0 chr3 197339814 197339840 -20697318 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1899 152 3 0 chr3 197339840 197340127 -20697031 - AluSq SINE Alu -22 291 1 438 188 0 0 chr3 197340401 197340497 -20696661 + (CATA)n Simple_repeat Simple_repeat 1 96 0 2229 115 7 0 chr3 197340508 197340813 -20696345 + AluSp SINE Alu 1 307 -6 604 329 149 27 chr3 197340845 197341369 -20695789 - L2 LINE L2 -6 3266 2690 354 264 36 36 chr3 197342023 197342133 -20695025 + L2 LINE L2 3173 3282 -31 1072 78 0 0 chr3 197342135 197342264 -20694894 - AluSq/x SINE Alu -182 130 2 429 276 10 0 chr3 197342296 197342394 -20694764 + L2 LINE L2 3174 3272 0 451 194 21 2 chr3 197342581 197342704 -20694454 + L1MA4A LINE L1 6026 6280 0 2051 130 0 32 chr3 197342836 197343151 -20694007 + AluSx SINE Alu 6 310 -2 213 255 284 10 chr3 197343370 197343472 -20693686 - MIR SINE MIR -81 181 52 306 162 20 3 chr3 197344317 197344404 -20692754 - FLAM_A SINE Alu 0 133 14 246 222 263 0 chr3 197344517 197344616 -20692542 - L1ME4a LINE L1 -2 6119 5995 1423 138 92 120 chr3 197344746 197344903 -20692255 + MER44D DNA MER2_type 1 161 -2330 1955 120 25 4 chr3 197344903 197345177 -20691981 - AluSg SINE Alu -30 280 1 1423 138 92 120 chr3 197345177 197345368 -20691790 + MER44D DNA MER2_type 161 609 0 2145 115 0 23 chr3 197345431 197345735 -20691423 - AluY SINE Alu -14 297 1 1608 184 10 10 chr3 197345812 197346111 -20691047 - AluJo SINE Alu -13 299 1 407 62 0 0 chr3 197346144 197346192 -20690966 + Alu SINE Alu 2 49 -260 2293 110 0 3 chr3 197346377 197346677 -20690481 - AluSq SINE Alu -14 299 1 2018 119 7 0 chr3 197346809 197347104 -20690054 + AluSg SINE Alu 1 297 -13 720 185 8 0 chr3 197347184 197347303 -20689855 - AluSq/x SINE Alu -188 124 5 269 238 95 0 chr3 197347320 197347404 -20689754 + L1ME4a LINE L1 6028 6119 -2 472 315 61 18 chr3 197348490 197348655 -20688503 + MIR3 SINE MIR 25 196 -12 384 97 0 0 chr3 197349614 197349676 -20687482 + (CA)n Simple_repeat Simple_repeat 2 63 0 1864 132 59 0 chr3 197349863 197350151 -20687007 - AluSx SINE Alu -7 305 1 1632 168 7 40 chr3 197350316 197350613 -20686545 + AluJb SINE Alu 1 287 -25 348 43 0 0 chr3 197350615 197350661 -20686497 + (TG)n Simple_repeat Simple_repeat 1 46 0 895 161 0 0 chr3 197350860 197351003 -20686155 - AluSq SINE Alu -15 298 156 584 117 0 0 chr3 197351004 197351081 -20686077 - AluSq SINE Alu -234 78 2 230 130 22 0 chr3 197351231 197351277 -20685881 - L1MC4 LINE L1 0 8042 7996 2097 127 10 0 chr3 197351983 197352275 -20684883 + AluSq SINE Alu 1 295 -18 795 193 7 0 chr3 197352397 197352532 -20684626 + FLAM_A SINE Alu 1 136 -6 237 108 0 0 chr3 197352615 197352652 -20684506 + (TG)n Simple_repeat Simple_repeat 2 38 0 373 300 57 31 chr3 197352653 197352808 -20684350 - L1MC4 LINE L1 -122 7920 7756 2284 114 0 6 chr3 197352808 197353123 -20684035 - AluSq SINE Alu 0 313 1 373 300 57 31 chr3 197353123 197353194 -20683964 - L1MC4 LINE L1 -286 7756 7688 1005 244 31 19 chr3 197353222 197353480 -20683678 + MLT1A2 LTR MaLR 113 373 -1 1534 180 3 14 chr3 197353515 197353837 -20683321 + AluJb SINE Alu 3 321 0 646 217 40 0 chr3 197353938 197354090 -20683068 + MIR SINE MIR 84 241 -21 328 253 108 0 chr3 197354099 197354182 -20682976 + L2 LINE L2 3192 3283 -30 843 212 0 24 chr3 197354222 197354392 -20682766 + FAM SINE Alu 1 46 -3 1241 186 0 45 chr3 197354392 197354634 -20682524 + AluJb SINE Alu 82 312 0 259 263 95 63 chr3 197355158 197355253 -20681905 + MER5A DNA MER1_type 7 104 -85 28 0 0 0 chr3 197355319 197355347 -20681811 + AT_rich Low_complexity Low_complexity 1 28 0 2333 89 3 0 chr3 197355347 197355640 -20681518 + AluSg SINE Alu 1 294 -16 251 171 0 0 chr3 197355647 197355688 -20681470 - L1MC/D LINE L1 -631 5702 5662 1418 192 48 14 chr3 197355695 197355987 -20681171 - AluJo SINE Alu -10 302 1 2518 66 0 7 chr3 197355999 197356301 -20680857 - AluY SINE Alu -11 300 1 2442 135 28 32 chr3 197356316 197356719 -20680439 - L1MC/D LINE L1 -663 5670 5282 2092 136 10 3 chr3 197356719 197357029 -20680129 - AluSq SINE Alu -1 312 1 2442 135 28 32 chr3 197357029 197357126 -20680032 - L1MC/D LINE L1 -1051 5282 5186 495 345 12 18 chr3 197357364 197357532 -20679626 + MIR3 SINE MIR 20 186 -22 318 285 77 23 chr3 197359958 197360088 -20677070 - MIR SINE MIR -67 195 59 2303 107 0 7 chr3 197360176 197360486 -20676672 + AluSx SINE Alu 1 308 -4 1301 107 0 0 chr3 197360491 197360659 -20676499 + AluSg/x SINE Alu 133 300 -10 351 241 143 9 chr3 197360836 197360948 -20676210 + MIR SINE MIR 48 174 -88 181 195 13 130 chr3 197361822 197361899 -20675259 + MIR SINE MIR 86 153 -55 1485 154 128 0 chr3 197361949 197362215 -20674943 - AluJb SINE Alu -12 300 1 453 319 91 38 chr3 197362239 197362412 -20674746 + L2 LINE L2 1163 1325 -1989 1058 179 72 0 chr3 197362412 197362607 -20674551 - MER3 DNA MER1_type 0 209 1 453 319 91 38 chr3 197362607 197362833 -20674325 + L2 LINE L2 1325 1667 -1647 435 192 71 20 chr3 197362850 197362949 -20674209 + L1MDa LINE L1 3 106 -6434 228 125 47 0 chr3 197362949 197363013 -20674145 + (TA)n Simple_repeat Simple_repeat 1 67 0 261 0 0 0 chr3 197363054 197363083 -20674075 + (CA)n Simple_repeat Simple_repeat 2 30 0 4739 226 96 46 chr3 197363098 197363147 -20674011 + L1MDa LINE L1 122 167 -6373 2391 93 0 0 chr3 197363147 197363457 -20673701 + AluY SINE Alu 2 311 0 4739 226 96 46 chr3 197363457 197364423 -20672735 + L1MDa LINE L1 167 1236 -5304 2088 117 4 0 chr3 197364423 197364732 -20672426 + AluSx SINE Alu 1 310 0 4739 226 96 46 chr3 197364732 197365166 -20671992 + L1MDa LINE L1 1236 1647 -4893 1306 192 0 0 chr3 197365169 197365377 -20671781 - AluJb SINE Alu -91 221 14 599 234 31 14 chr3 197365382 197365569 -20671589 + L1MDa LINE L1 1581 1891 -4649 509 211 73 8 chr3 197365624 197365747 -20671411 + L1MDa LINE L1 1857 1987 -4553 820 154 0 0 chr3 197365765 197365882 -20671276 + FLAM_C SINE Alu 11 127 -16 234 193 0 0 chr3 197365883 197365940 -20671218 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 1291 221 15 0 chr3 197365940 197366212 -20670946 - AluSx SINE Alu -25 287 12 2145 115 0 23 chr3 197366815 197367119 -20670039 - AluY SINE Alu -14 297 1 922 183 6 24 chr3 197367196 197367365 -20669793 - FRAM SINE Alu -18 158 1 1889 118 28 24 chr3 197367371 197367659 -20669499 - AluSq SINE Alu -24 289 1 291 353 49 0 chr3 197368496 197368629 -20668529 + MIR3 SINE MIR 45 187 -21 266 206 382 15 chr3 197368657 197368793 -20668365 - MER5B DNA MER1_type -3 186 1 2104 125 0 20 chr3 197369010 197369313 -20667845 + AluSx SINE Alu 1 297 -15 2381 149 22 0 chr3 197369334 197369696 -20667462 + L1MC1 LINE L1 5955 6324 -9 813 147 0 0 chr3 197369699 197369808 -20667350 + FLAM_C SINE Alu 3 111 -32 529 16 0 0 chr3 197369809 197369870 -20667288 + (TTTTC)n Simple_repeat Simple_repeat 4 65 0 1093 128 67 46 chr3 197369870 197370065 -20667093 - AluSq SINE Alu -30 283 85 889 192 64 0 chr3 197370104 197370260 -20666898 + FRAM SINE Alu 1 166 0 862 121 27 7 chr3 197370281 197370430 -20666728 + L1MA8 LINE L1 6139 6290 -1 467 272 0 16 chr3 197370917 197371042 -20666116 + L2 LINE L2 3182 3304 -9 2232 96 0 38 chr3 197371117 197371431 -20665727 + AluSp SINE Alu 1 302 -11 4830 76 8 8 chr3 197371680 197372315 -20664843 + SVA Other Other 746 1380 -6 24 0 0 0 chr3 197372315 197372339 -20664819 + AT_rich Low_complexity Low_complexity 1 24 0 2359 107 3 0 chr3 197372339 197372685 -20664473 + L1PA13 LINE L1 5815 6161 -2 413 279 194 34 chr3 197372719 197373013 -20664145 - L2 LINE L2 -817 2497 2157 542 304 22 16 chr3 197373038 197373222 -20663936 - MER5A DNA MER1_type -1 188 4 213 350 43 14 chr3 197373227 197373367 -20663791 - L2 LINE L2 -1198 2116 1973 998 218 59 68 chr3 197373483 197373823 -20663335 - MER46C DNA MER2_type 0 338 2 2503 56 0 0 chr3 197374527 197374829 -20662329 - AluY SINE Alu -9 302 1 326 250 188 0 chr3 197375403 197375547 -20661611 + L1ME4a LINE L1 5946 6116 -5 939 137 0 0 chr3 197376620 197376759 -20660399 - AluSg/x SINE Alu -2 307 169 2239 90 0 0 chr3 197377494 197377804 -20659354 - AluSg SINE Alu 0 310 1 740 167 0 0 chr3 197378127 197378241 -20658917 - FRAM SINE Alu -25 151 38 305 299 86 8 chr3 197378473 197378590 -20658568 - MIR SINE MIR -107 155 30 265 298 11 32 chr3 197378712 197378806 -20658352 + MIR SINE MIR 44 135 -73 377 123 15 0 chr3 197378808 197378873 -20658285 + CT-rich Low_complexity Low_complexity 2 67 0 2068 119 34 0 chr3 197378884 197379177 -20657981 - AluSg SINE Alu -7 303 1 802 45 18 0 chr3 197379180 197379291 -20657867 + (TTTC)n Simple_repeat Simple_repeat 3 115 0 673 179 26 8 chr3 197379292 197379409 -20657749 - FLAM_C SINE Alu -24 119 1 195 322 107 8 chr3 197379417 197379538 -20657620 + MIR SINE MIR 130 262 0 244 277 19 19 chr3 197379611 197379709 -20657449 + CT-rich Low_complexity Low_complexity 4 155 0 313 234 106 11 chr3 197379727 197379821 -20657337 - L1MC5 LINE L1 -37 7924 7822 242 239 0 0 chr3 197381107 197381153 -20656005 + L2 LINE L2 3219 3264 -8 518 309 118 5 chr3 197382634 197382838 -20654320 + MIR SINE MIR 33 259 -3 779 218 71 0 chr3 197382927 197383097 -20654061 + AluJo SINE Alu 122 303 -9 2383 109 0 0 chr3 197383166 197383468 -20653690 - AluSx SINE Alu -10 302 1 281 243 81 81 chr3 197383557 197383730 -20653428 + MIR SINE MIR 90 262 0 456 254 122 6 chr3 197384232 197384413 -20652745 + L1ME LINE L1 5526 5727 -394 352 261 17 128 chr3 197384754 197384934 -20652224 - MIR SINE MIR -75 187 28 2269 63 11 3 chr3 197385710 197385997 -20651161 + AluSp SINE Alu 3 291 -22 2348 87 3 0 chr3 197386385 197386684 -20650474 + AluSp SINE Alu 1 300 -13 319 326 113 0 chr3 197386875 197387016 -20650142 + MIR SINE MIR 93 249 -13 1514 103 0 0 chr3 197387030 197387225 -20649933 + AluSg/x SINE Alu 78 272 -40 2261 105 10 0 chr3 197387710 197388015 -20649143 + AluSp SINE Alu 1 308 -5 481 64 26 13 chr3 197388019 197388097 -20649061 + (GGAA)n Simple_repeat Simple_repeat 2 80 0 501 285 73 64 chr3 197388283 197388613 -20648545 - L1ME4a LINE L1 -3 6118 5786 931 187 0 7 chr3 197388614 197388769 -20648389 - AluSg/x SINE Alu -16 296 143 422 320 0 0 chr3 197389550 197389653 -20647505 - L3 LINE CR1 -78 1499 1397 437 289 164 25 chr3 197389761 197389962 -20647196 - L3 LINE CR1 -701 876 648 2238 120 35 13 chr3 197390164 197390539 -20646619 - MLT1B LTR MaLR 0 390 8 2141 137 7 0 chr3 197390672 197390979 -20646179 - AluSx SINE Alu -3 309 1 2066 123 10 10 chr3 197391472 197391765 -20645393 + AluSx SINE Alu 2 294 -18 491 319 92 17 chr3 197391976 197392214 -20644944 + MIR SINE MIR 7 262 0 261 271 198 7 chr3 197392231 197392369 -20644789 - MIR SINE MIR -75 187 18 191 295 38 57 chr3 197392918 197393023 -20644135 - L2 LINE L2 -64 3249 3147 524 358 71 23 chr3 197393056 197393366 -20643792 - L2 LINE L2 -412 2902 2578 5146 150 2 26 chr3 197393388 197394678 -20642480 + L1PA14 LINE L1 4252 5571 -590 2074 101 3 52 chr3 197394678 197395024 -20642134 + AluSp SINE Alu 1 313 0 5146 150 2 26 chr3 197395024 197395326 -20641832 + L1PA14 LINE L1 5571 5769 -392 2132 82 61 0 chr3 197395326 197395619 -20641539 + AluY SINE Alu 1 311 0 5146 150 2 26 chr3 197395619 197395677 -20641481 + L1PA14 LINE L1 5769 5827 -334 298 0 0 45 chr3 197395677 197395721 -20641437 + (TCTCCC)n Simple_repeat Simple_repeat 1 42 0 2843 63 3 0 chr3 197395722 197396085 -20641073 + SVA Other Other 52 415 -971 1906 107 8 0 chr3 197396335 197396587 -20640571 - AluSx SINE Alu -22 290 37 2504 129 35 38 chr3 197397028 197397080 -20640078 + MSTB LTR MaLR 1 52 -374 2203 67 0 0 chr3 197397080 197397348 -20639810 + AluY SINE Alu 35 302 -9 2504 129 35 38 chr3 197397348 197397721 -20639437 + MSTB LTR MaLR 52 425 -1 260 289 59 29 chr3 197397742 197397946 -20639212 + L1MC4a LINE L1 5715 5924 -1884 333 0 0 0 chr3 197398313 197398350 -20638808 + (TG)n Simple_repeat Simple_repeat 2 38 0 310 266 48 131 chr3 197401910 197402021 -20635137 + L1MC4a LINE L1 5717 5801 -2007 2248 119 3 3 chr3 197402021 197402331 -20634827 + AluSx SINE Alu 1 310 -2 310 266 48 131 chr3 197402331 197402448 -20634710 + L1MC4a LINE L1 5801 5926 -1882 191 259 12 0 chr3 197403225 197403310 -20633848 + (TA)n Simple_repeat Simple_repeat 1 86 0 363 341 31 0 chr3 197403966 197404095 -20633063 - MIR3 SINE MIR -46 162 30 490 212 30 0 chr3 197404231 197404330 -20632828 + MLT1G1 LTR MaLR 3 104 -491 712 186 0 0 chr3 197404335 197404448 -20632710 + AluJo/FLAM SINE Alu 6 118 -194 2288 51 0 44 chr3 197404449 197404781 -20632377 - AluY SINE Alu 0 319 1 247 274 67 30 chr3 197404818 197404953 -20632205 + L1P5 LINE L1 5321 5460 -694 319 306 144 20 chr3 197405014 197405361 -20631797 + L1MC4a LINE L1 5506 5895 -1913 2446 99 3 0 chr3 197405424 197405736 -20631422 + AluSq SINE Alu 1 313 0 535 113 0 12 chr3 197405935 197406015 -20631143 + AluS SINE Alu 1 79 -234 232 259 327 0 chr3 197406604 197406714 -20630444 + MIR3 SINE MIR 20 156 -52 365 310 121 35 chr3 197406727 197406901 -20630257 + MIR SINE MIR 47 235 -27 808 163 0 15 chr3 197407974 197408109 -20629049 - FLAM_A SINE Alu 0 133 1 188 289 144 33 chr3 197408514 197408604 -20628554 - MER5B DNA MER1_type -75 103 4 340 227 187 65 chr3 197408853 197409007 -20628151 + MIR SINE MIR 12 186 -22 278 370 56 36 chr3 197409674 197409925 -20627233 + L2 LINE L2 3007 3262 -10 194 0 39 0 chr3 197411116 197411142 -20626016 + (CA)n Simple_repeat Simple_repeat 1 27 0 369 341 29 7 chr3 197412468 197412606 -20624552 - MIR SINE MIR -110 152 12 2692 23 3 0 chr3 197412902 197413206 -20623952 + AluY SINE Alu 1 305 -6 1240 165 9 9 chr3 197413289 197413519 -20623639 + MER46A DNA MER2_type 1 230 -6 808 289 57 29 chr3 197413540 197413958 -20623200 - L1MC4a LINE L1 -1834 5974 5545 639 236 37 19 chr3 197413973 197414189 -20622969 - L1MC4a LINE L1 -2319 5489 5270 759 204 46 46 chr3 197414596 197414749 -20622409 - MIR SINE MIR -8 254 99 1337 189 98 19 chr3 197414749 197415067 -20622091 - MER2 DNA MER2_type 0 344 2 759 204 46 46 chr3 197415067 197415129 -20622029 - MIR SINE MIR -162 100 39 333 0 0 0 chr3 197415211 197415248 -20621910 + (CA)n Simple_repeat Simple_repeat 1 37 0 2051 155 26 2 chr3 197415505 197415930 -20621228 - L1PBa LINE L1 -4819 2044 1610 967 156 39 5 chr3 197415927 197416132 -20621026 - L1PB1 LINE L1 -788 5358 5147 * 712 31 0 0 chr3 197416145 197416243 -20620915 + L1PB1 LINE L1 5342 5439 -712 3665 113 0 14 chr3 197416272 197416691 -20620467 + L1PB1 LINE L1 5592 6002 -149 2212 131 17 8 chr3 197416691 197417043 -20620115 + THE1A LTR MaLR 1 355 0 3665 113 0 14 chr3 197417043 197417188 -20619970 + L1PB1 LINE L1 6002 6148 -3 260 386 77 14 chr3 197417403 197417610 -20619548 - L2 LINE L2 -407 2907 2688 414 134 0 0 chr3 197417956 197418023 -20619135 + (TC)n Simple_repeat Simple_repeat 2 68 0 659 255 119 14 chr3 197418167 197418317 -20618841 + L1MC4a LINE L1 5494 5627 -494 240 35 0 0 chr3 197418317 197418346 -20618812 + (CA)n Simple_repeat Simple_repeat 1 29 0 659 255 119 14 chr3 197418346 197418563 -20618595 + L1MC4a LINE L1 5627 5819 -302 181 296 0 0 chr3 197418798 197418842 -20618316 - L2 LINE L2 -79 3193 3150 184 398 0 12 chr3 197419073 197419156 -20618002 - MIR3 SINE MIR -53 155 74 203 267 0 0 chr3 197420129 197420174 -20616984 - L2 LINE L2 -12 3301 3257 21 0 0 0 chr3 197421113 197421134 -20616024 + AT_rich Low_complexity Low_complexity 1 21 0 240 208 62 31 chr3 197421326 197421422 -20615736 + L1ME LINE L1 5725 5823 -298 391 287 132 60 chr3 197421495 197421729 -20615429 + MIR SINE MIR 16 261 -1 525 152 0 0 chr3 197422203 197422302 -20614856 - L1PA13 LINE L1 0 6163 6065 355 298 139 26 chr3 197423535 197423686 -20613472 - L2 LINE L2 -2 3270 3103 256 155 35 0 chr3 197424778 197424836 -20612322 + L1ME4a LINE L1 6058 6117 -4 697 192 0 0 chr3 197424953 197425073 -20612085 + FLAM_C SINE Alu 1 120 -23 253 253 137 0 chr3 197425104 197425199 -20611959 - MIR SINE MIR -32 230 123 242 160 20 0 chr3 197425219 197425269 -20611889 + GA-rich Low_complexity Low_complexity 1 51 0 580 329 39 22 chr3 197425534 197425765 -20611393 - MIR SINE MIR -23 239 5 2210 82 0 4 chr3 197425788 197426186 -20610972 + AluSg SINE Alu 3 399 0 35 24 0 0 chr3 197426423 197426465 -20610693 + AT_rich Low_complexity Low_complexity 1 42 0 2246 112 0 31 chr3 197426985 197427307 -20609851 + AluSx SINE Alu 1 312 0 385 268 57 0 chr3 197427668 197427791 -20609367 - MER94 DNA DNA -4 130 1 535 269 11 38 chr3 197428049 197428235 -20608923 + MIR SINE MIR 56 236 -26 330 365 0 0 chr3 197428508 197428678 -20608480 + C-rich Low_complexity Low_complexity 1 170 0 2296 104 3 0 chr3 197428752 197429051 -20608107 - AluSg SINE Alu -10 300 1 465 19 0 0 chr3 197429054 197429108 -20608050 + (TA)n Simple_repeat Simple_repeat 2 55 0 23 0 0 0 chr3 197429108 197429131 -20608027 + AT_rich Low_complexity Low_complexity 1 23 0 441 229 64 9 chr3 197429388 197429497 -20607661 + MER91C DNA MER1_type 4 118 -22 13961 132 39 15 chr3 197429596 197431957 -20605201 - Tigger1 DNA MER2_type 0 2418 2 183 139 0 0 chr3 197432669 197432705 -20604453 + (TGG)n Simple_repeat Simple_repeat 3 38 0 669 292 51 14 chr3 197433101 197433317 -20603841 - MIR SINE MIR -13 249 26 923 200 57 52 chr3 197433425 197433635 -20603523 - MIR SINE MIR -10 252 42 188 35 35 0 chr3 197435015 197435044 -20602114 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 484 312 173 23 chr3 197435319 197435585 -20601573 + L2 LINE L2 3005 3310 -3 491 31 15 0 chr3 197435672 197435737 -20601421 + (TG)n Simple_repeat Simple_repeat 2 67 0 467 233 0 0 chr3 197436123 197436226 -20600932 + MLT1I LTR MaLR 305 407 -2 246 325 67 33 chr3 197436400 197436520 -20600638 + L2 LINE L2 3149 3272 0 265 257 29 57 chr3 197436859 197436964 -20600194 - MIR SINE MIR -56 206 105 307 359 73 22 chr3 197438086 197438359 -20598799 + L3 LINE CR1 62 348 -1229 270 0 0 0 chr3 197438369 197438399 -20598759 + (CA)n Simple_repeat Simple_repeat 2 31 0 1083 165 62 78 chr3 197438420 197438741 -20598417 + MLT1D LTR MaLR 8 323 -182 737 178 65 47 chr3 197438739 197438908 -20598250 + MLT2B2 LTR ERVL 290 461 -54 * 1249 232 90 16 chr3 197438906 197439389 -20597769 - MLT1E LTR MaLR -29 564 3 228 357 48 0 chr3 197439861 197439945 -20597213 - L3 LINE CR1 -1223 354 267 * 497 312 23 12 chr3 197439936 197440109 -20597049 + L2 LINE L2 2804 2978 -335 184 229 221 41 chr3 197440138 197440149 -20597009 + L2 LINE L2 3082 3090 -223 701 217 139 0 chr3 197440149 197440315 -20596843 - MER5A DNA MER1_type 0 189 1 184 229 221 41 chr3 197440315 197440425 -20596733 + L2 LINE L2 3090 3225 -88 21 36 0 0 chr3 197441147 197441175 -20595983 + AT_rich Low_complexity Low_complexity 1 28 0 423 286 106 42 chr3 197441526 197441704 -20595454 - MIR3 SINE MIR -1 207 12 1507 202 62 21 chr3 197441861 197442234 -20594924 + MLT1B LTR MaLR 1 465 -2 475 341 56 0 chr3 197443302 197443481 -20593677 + MIR SINE MIR 1 189 -73 381 22 0 0 chr3 197445246 197445292 -20591866 + (CA)n Simple_repeat Simple_repeat 1 46 0 211 343 36 43 chr3 197445568 197445708 -20591450 + L2 LINE L2 2721 2859 -455 275 248 9 0 chr3 197446214 197446319 -20590839 + (TG)n Simple_repeat Simple_repeat 2 107 0 759 189 0 6 chr3 197446339 197446704 -20590454 + (TG)n Simple_repeat Simple_repeat 1 362 0 2439 100 3 0 chr3 197447687 197447998 -20589160 + AluSp SINE Alu 2 313 0 398 277 90 32 chr3 197448466 197448621 -20588537 + MIR SINE MIR 1 164 -98 219 279 76 0 chr3 197449320 197449399 -20587759 + MIR SINE MIR 175 259 -3 245 329 14 14 chr3 197452316 197452386 -20584772 - MIR SINE MIR -119 89 20 546 272 163 15 chr3 197452938 197453140 -20584018 - MIR SINE MIR 0 262 31 387 337 74 66 chr3 197453822 197454080 -20583078 + L2 LINE L2 2921 3180 -92 539 327 12 55 chr3 197454087 197454344 -20582814 + MIR SINE MIR 3 248 -14 262 237 66 13 chr3 197454756 197454832 -20582326 + L2 LINE L2 3229 3308 -5 195 171 49 0 chr3 197455191 197455232 -20581926 - L2 LINE L2 -28 3244 3202 352 324 92 16 chr3 197455608 197455793 -20581365 + MIR SINE MIR 22 220 -42 193 265 61 0 chr3 197456201 197456250 -20580908 - L2 LINE L2 -5 3267 3216 1751 166 7 0 chr3 197457188 197457459 -20579699 + AluJb SINE Alu 11 283 -29 366 42 0 0 chr3 197457459 197457507 -20579651 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 544 130 10 0 chr3 197457536 197457636 -20579522 - L1PA13 LINE L1 0 6163 6063 33 43 0 0 chr3 197457651 197457698 -20579460 + AT_rich Low_complexity Low_complexity 1 47 0 228 298 69 46 chr3 197457769 197457900 -20579258 + L2 LINE L2 3006 3139 -133 410 295 204 0 chr3 197458212 197458396 -20578762 + MIR SINE MIR 19 228 -21 21 36 0 0 chr3 197458442 197458470 -20578688 + AT_rich Low_complexity Low_complexity 1 28 0 207 294 174 9 chr3 197459761 197459870 -20577288 + MIR SINE MIR 123 249 -13 528 305 90 13 chr3 197460815 197461048 -20576110 - MIR SINE MIR 0 262 10 23 0 0 0 chr3 197461286 197461309 -20575849 + AT_rich Low_complexity Low_complexity 1 23 0 2537 79 19 26 chr3 197461309 197461687 -20575471 - L1PB1 LINE L1 -1 6150 5776 25 0 0 0 chr3 197461708 197461733 -20575425 + AT_rich Low_complexity Low_complexity 1 25 0 597 275 32 39 chr3 197461880 197462204 -20574954 - MLT1J LTR MaLR -159 287 1 390 256 111 8 chr3 197462582 197462699 -20574459 - MIR3 SINE MIR -9 199 71 214 218 92 58 chr3 197464013 197464100 -20573058 + MIR SINE MIR 146 235 -27 348 331 8 23 chr3 197464513 197464643 -20572515 - MIR3 SINE MIR -7 201 74 371 289 149 0 chr3 197465207 197465321 -20571837 - L3 LINE CR1 -3 1574 1444 293 331 199 6 chr3 197466469 197466650 -20570508 + MIR SINE MIR 47 262 0 2501 69 0 3 chr3 197466725 197467031 -20570127 + AluY SINE Alu 1 305 -6 1332 78 0 103 chr3 197468302 197468348 -20568810 + L1MA1 LINE L1 6080 6129 -173 2230 99 3 0 chr3 197468348 197468664 -20568494 - AluSp SINE Alu 0 317 1 1332 78 0 103 chr3 197468664 197468859 -20568299 + L1MA1 LINE L1 6129 6297 -5 504 301 20 31 chr3 197469445 197469641 -20567517 + MIR3 SINE MIR 9 202 -6 205 276 81 23 chr3 197470131 197470218 -20566940 - MIR SINE MIR -75 133 42 411 307 92 23 chr3 197470568 197470786 -20566372 + MIR SINE MIR 30 262 0 201 170 0 106 chr3 197470886 197470933 -20566225 + L3 LINE CR1 1516 1557 -20 403 224 146 4 chr3 197471398 197471525 -20565633 + MIR3 SINE MIR 60 203 -5 196 98 24 24 chr3 197471610 197471651 -20565507 + (TTTC)n Simple_repeat Simple_repeat 3 43 0 372 189 0 0 chr3 197472508 197472582 -20564576 + T-rich Low_complexity Low_complexity 1 74 0 21 0 0 0 chr3 197472778 197472799 -20564359 + AT_rich Low_complexity Low_complexity 1 21 0 205 350 95 46 chr3 197474223 197474529 -20562629 + L2 LINE L2 2657 2977 -337 791 295 120 17 chr3 197474589 197475115 -20562043 + L1ME4a LINE L1 5476 6055 -66 3118 138 21 17 chr3 197475120 197475648 -20561510 + L1MC2 LINE L1 5813 6342 -2 188 253 133 27 chr3 197475842 197475917 -20561241 + L2 LINE L2 3152 3234 -38 216 0 0 0 chr3 197476522 197476546 -20560612 + (T)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr3 197476546 197476568 -20560590 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr3 197476696 197476720 -20560438 + (T)n Simple_repeat Simple_repeat 1 24 0 321 380 0 0 chr3 197476949 197477099 -20560059 + G-rich Low_complexity Low_complexity 1 150 0 206 307 13 0 chr3 197477227 197477302 -20559856 + G-rich Low_complexity Low_complexity 5 80 0 428 225 248 0 chr3 197478485 197478614 -20558544 - MIR SINE MIR -5 257 97 426 289 146 67 chr3 197479900 197480139 -20557019 - MIR SINE MIR 0 262 5 22 35 0 0 chr3 197480160 197480189 -20556969 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr3 197480272 197480292 -20556866 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 7343 59 4 0 chr3 197480293 197481556 -20555602 - L1PA7 LINE L1 -16 6138 4876 1829 91 0 0 chr3 197481557 197481811 -20555347 - L1PA7 LINE L1 -2715 3431 3178 6100 89 1 2 chr3 197481823 197482645 -20554513 - L1P LINE L1 -1262 4884 4064 1630 138 0 4 chr3 197482749 197483002 -20554156 + L1MA3 LINE L1 6054 6305 0 32 43 0 0 chr3 197483005 197483051 -20554107 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr3 197483123 197483144 -20554014 + AT_rich Low_complexity Low_complexity 1 21 0 1744 164 20 3 chr3 197483157 197483456 -20553702 + AluY SINE Alu 1 304 -7 1467 95 59 14 chr3 197483562 197483784 -20553374 + L1P4 LINE L1 5423 5654 -512 241 98 0 0 chr3 197483784 197483825 -20553333 + Alu SINE Alu 259 299 -4 910 198 0 0 chr3 197483830 197483987 -20553171 + AluSg/x SINE Alu 130 286 -26 2147 93 0 0 chr3 197484322 197484600 -20552558 + AluSx SINE Alu 5 282 -30 3682 236 53 22 chr3 197484749 197485900 -20551258 + L1 LINE L1 4042 5228 -918 719 31 21 0 chr3 197486954 197487051 -20550107 + (TTTG)n Simple_repeat Simple_repeat 2 100 0 33 25 0 0 chr3 197487288 197487328 -20549830 + AT_rich Low_complexity Low_complexity 1 40 0 2239 97 6 13 chr3 197490061 197490372 -20546786 + AluY SINE Alu 1 309 -2 210 356 87 9 chr3 197491148 197491263 -20545895 - L2 LINE L2 0 3272 3149 255 262 93 47 chr3 197491596 197491780 -20545378 + L3 LINE CR1 1317 1577 0 22 0 0 0 chr3 197494001 197494023 -20543135 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 197496772 197496793 -20540365 + AT_rich Low_complexity Low_complexity 1 21 0 1426 167 0 16 chr3 197497907 197498152 -20539006 + L1PA8 LINE L1 5931 6171 -1 239 335 26 36 chr3 197498171 197498365 -20538793 + L1P LINE L1 3610 3801 -2345 378 182 232 0 chr3 197549675 197549774 -20487384 - L2 LINE L2 -4 3309 3188 219 69 0 0 chr3 197549886 197549915 -20487243 + (CA)n Simple_repeat Simple_repeat 2 30 0 220 49 73 0 chr3 197550029 197550070 -20487088 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 605 49 0 12 chr3 197550799 197550881 -20486277 - AluYa5/8 SINE Alu -9 302 222 24 53 0 0 chr3 197551121 197551159 -20485999 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr3 197551412 197551433 -20485725 + AT_rich Low_complexity Low_complexity 1 21 0 1538 162 58 40 chr3 197552240 197552518 -20484640 + AluJo SINE Alu 1 283 -29 1890 49 4 12 chr3 197553233 197553480 -20483678 + L1PA4 LINE L1 5911 6155 0 217 298 0 0 chr3 197554080 197554137 -20483021 - L2 LINE L2 0 3313 3257 244 291 0 25 chr3 197555142 197555221 -20481937 + GA-rich Low_complexity Low_complexity 5 81 0 3977 185 15 28 chr3 197555741 197555836 -20481322 + L1MB5 LINE L1 5328 5423 -751 2390 90 0 3 chr3 197555836 197556136 -20481022 + AluSx SINE Alu 1 299 -13 3977 185 15 28 chr3 197556136 197556892 -20480266 + L1MB5 LINE L1 5423 6168 -6 639 39 0 0 chr3 197556892 197556970 -20480188 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 244 362 57 0 chr3 197556995 197557100 -20480058 + MER5B DNA MER1_type 59 169 -9 1963 124 25 0 chr3 197557136 197557410 -20479748 + AluSq SINE Alu 1 281 -32 203 0 37 0 chr3 197557410 197557437 -20479721 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 198 312 21 32 chr3 197557768 197557861 -20479297 - MIR SINE MIR -123 139 48 735 239 75 26 chr3 197557949 197558175 -20478983 + MIR SINE MIR 14 250 -12 21 57 0 0 chr3 197558565 197558600 -20478558 + AT_rich Low_complexity Low_complexity 1 35 0 198 136 204 0 chr3 197559592 197559636 -20477522 + MER5A DNA MER1_type 115 167 -22 5570 195 8 4 chr3 197560165 197561378 -20475780 - L1P LINE L1 -3147 2999 1782 186 339 46 0 chr3 197561386 197561451 -20475707 - L2 LINE L2 -20 3293 3226 2408 84 0 0 chr3 197563100 197563399 -20473759 - AluY SINE Alu -12 299 1 534 245 26 0 chr3 197563700 197563855 -20473303 - MER103 DNA DNA 0 166 8 788 240 192 38 chr3 197564508 197565136 -20472022 + L2 LINE L2 2577 3309 -4 572 288 25 12 chr3 197565316 197565476 -20471682 + MIR SINE MIR 69 230 -32 504 257 56 11 chr3 197565796 197565975 -20471183 - L1MD3 LINE L1 -9 7986 7800 553 257 87 33 chr3 197567038 197567221 -20469937 + MIR SINE MIR 20 212 -50 2350 71 10 32 chr3 197567249 197567558 -20469600 + AluY SINE Alu 2 303 -8 229 104 0 42 chr3 197567675 197567723 -20469435 + (TTTTC)n Simple_repeat Simple_repeat 1 46 0 347 309 68 37 chr3 197569036 197569198 -20467960 - MIR SINE MIR -28 234 68 300 357 60 30 chr3 197570127 197570326 -20466832 + L2 LINE L2 2439 2643 -671 285 253 63 25 chr3 197570423 197570502 -20466656 + L2 LINE L2 3231 3312 -1 442 313 75 6 chr3 197571436 197571596 -20465562 - MIR3 SINE MIR -5 203 33 35 24 0 0 chr3 197572589 197572631 -20464527 + AT_rich Low_complexity Low_complexity 1 42 0 555 228 26 0 chr3 197573121 197573235 -20463923 + MIR SINE MIR 54 170 -92 21 71 0 0 chr3 197573353 197573395 -20463763 + AT_rich Low_complexity Low_complexity 1 42 0 2318 85 3 3 chr3 197573615 197573910 -20463248 - AluSg SINE Alu -15 295 1 297 181 0 0 chr3 197573989 197574083 -20463075 + T-rich Low_complexity Low_complexity 1 94 0 7602 25 5 0 chr3 197574085 197575669 -20461489 - L1PA2 LINE L1 -4 6151 4564 3571 134 3 10 chr3 197575671 197576268 -20460890 - L1P LINE L1 -2286 3860 3268 22 0 0 0 chr3 197576511 197576533 -20460625 + AT_rich Low_complexity Low_complexity 1 22 0 327 269 111 0 chr3 197576580 197576688 -20460470 - MIR3 SINE MIR -5 203 84 231 221 250 0 chr3 197577051 197577119 -20460039 - MIR SINE MIR -107 155 71 963 163 0 52 chr3 197577586 197577758 -20459400 + AluJo SINE Alu 1 163 -149 552 177 88 0 chr3 197578016 197578129 -20459029 + AluJb SINE Alu 177 299 -13 939 266 23 39 chr3 197578529 197578788 -20458370 + MIR SINE MIR 6 260 -2 526 315 87 27 chr3 197579358 197579577 -20457581 - MIR SINE MIR -26 236 5 2174 294 114 38 chr3 197579914 197580154 -20457004 - L2 LINE L2 -10 3303 3083 2378 88 0 0 chr3 197580154 197580449 -20456709 - AluSc SINE Alu -14 295 1 2174 294 114 38 chr3 197580449 197581580 -20455578 - L2 LINE L2 -230 3083 1812 581 234 14 7 chr3 197581748 197581889 -20455269 + L1MC1 LINE L1 6191 6332 -1 355 226 16 89 chr3 197581902 197582026 -20455132 + L1M4 LINE L1 3184 3298 -2848 10046 196 20 38 chr3 197582158 197585497 -20451661 - L1P3 LINE L1 -3146 3315 13 2926 137 4 10 chr3 197585500 197586012 -20451146 - L1PA13 LINE L1 -232 5931 5423 290 220 0 11 chr3 197587245 197587336 -20449822 + GA-rich Low_complexity Low_complexity 2 91 0 343 308 0 10 chr3 197587769 197587873 -20449285 - MIR3 SINE MIR -3 205 103 923 182 6 12 chr3 197588209 197588374 -20448784 + FRAM SINE Alu 1 164 -2 187 339 16 0 chr3 197588396 197588458 -20448700 - MER5B DNA MER1_type -52 126 64 368 40 20 0 chr3 197589606 197589656 -20447502 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 550 210 68 51 chr3 197589919 197590095 -20447063 + MIR SINE MIR 38 216 -46 329 274 137 8 chr3 197592963 197593087 -20444071 + L2 LINE L2 3133 3272 0 371 144 0 113 chr3 197593453 197593550 -20443608 + MLT1A1 LTR MaLR 1 86 -279 1456 117 0 0 chr3 197593550 197593746 -20443412 + AluSg SINE Alu 1 196 -114 707 296 41 5 chr3 197594424 197594644 -20442514 - MIR SINE MIR -1 261 34 1042 202 25 0 chr3 197594649 197594852 -20442306 + MER3 DNA MER1_type 2 209 0 250 340 43 32 chr3 197594852 197594946 -20442212 + L2 LINE L2 3148 3242 -30 1993 119 48 7 chr3 197595509 197595803 -20441355 + AluSq SINE Alu 1 306 -7 394 296 73 17 chr3 197596046 197596225 -20440933 - MER5A DNA MER1_type 0 189 1 370 311 34 44 chr3 197596486 197596692 -20440466 + MLT1K LTR MaLR 222 425 -163 202 136 0 23 chr3 197599066 197599110 -20438048 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 457 257 35 9 chr3 197599343 197599456 -20437702 - L2 LINE L2 0 3272 3157 645 291 51 17 chr3 197600575 197600809 -20436349 + MIR SINE MIR 11 252 -10 363 242 65 81 chr3 197600834 197600923 -20436235 - MIR SINE MIR -77 185 96 1705 166 73 15 chr3 197600923 197601266 -20435892 - THE1B LTR MaLR 0 364 2 363 242 65 81 chr3 197601266 197601362 -20435796 - MIR SINE MIR -166 96 3 769 284 226 12 chr3 197602120 197602624 -20434534 - MLT1L LTR MaLR 0 615 4 515 291 102 19 chr3 197602632 197602838 -20434320 + MIR SINE MIR 34 256 -6 2479 60 3 35 chr3 197603662 197603981 -20433177 - AluSp SINE Alu -4 309 1 326 260 221 7 chr3 197604126 197604280 -20432878 + MIR3 SINE MIR 15 201 -7 277 257 0 27 chr3 197604635 197604709 -20432449 + CT-rich Low_complexity Low_complexity 3 74 0 631 301 80 9 chr3 197604804 197605030 -20432128 + MIR SINE MIR 21 262 0 421 301 60 0 chr3 197607792 197607925 -20429233 - L2 LINE L2 -8 3305 3165 488 229 0 0 chr3 197609551 197609656 -20427502 + MER94 DNA DNA 1 105 -29 1801 96 0 0 chr3 197609962 197610212 -20426946 + L1PA8 LINE L1 5923 6172 0 368 301 164 7 chr3 197610672 197610818 -20426340 + MIR SINE MIR 7 175 -87 21 82 0 0 chr3 197611955 197612004 -20425154 + AT_rich Low_complexity Low_complexity 1 49 0 246 289 26 70 chr3 197612075 197612231 -20424927 + L1MC/D LINE L1 5589 5737 -2071 22 35 0 0 chr3 197612520 197612549 -20424609 + AT_rich Low_complexity Low_complexity 1 29 0 231 284 95 0 chr3 197612618 197612692 -20424466 - MIR SINE MIR -24 238 158 472 146 11 11 chr3 197613225 197613314 -20423844 + GA-rich Low_complexity Low_complexity 4 92 0 457 129 21 21 chr3 197613352 197613445 -20423713 + GA-rich Low_complexity Low_complexity 3 95 0 1066 225 57 0 chr3 197613480 197613707 -20423451 + MLT1A1 LTR MaLR 126 365 0 452 278 212 5 chr3 197613962 197614160 -20422998 + MIR SINE MIR 21 259 -3 1578 73 0 0 chr3 197616090 197616295 -20420863 + L1PA12 LINE L1 5949 6153 -15 237 132 0 0 chr3 197616308 197616346 -20420812 + (A)n Simple_repeat Simple_repeat 1 38 0 292 337 19 11 chr3 197616940 197617080 -20420078 + MIR SINE MIR 45 180 -63 541 280 142 5 chr3 197617281 197617499 -20419659 - MIR SINE MIR 0 262 15 188 324 164 35 chr3 197619018 197619305 -20417853 + L2 LINE L2 2652 2975 -339 2113 111 0 3 chr3 197619638 197619927 -20417231 + AluSx SINE Alu 1 288 -24 221 57 29 0 chr3 197619945 197619980 -20417178 + (TAAAAA)n Simple_repeat Simple_repeat 5 40 0 355 266 97 18 chr3 197620065 197620178 -20416980 - L2 LINE L2 -1 3271 3150 251 372 38 3 chr3 197620580 197620706 -20416452 + MIR SINE MIR 3 131 -77 * 467 255 102 6 chr3 197620705 197620862 -20416296 + MIR SINE MIR 89 260 -2 264 219 49 24 chr3 197621070 197621152 -20416006 + MIR SINE MIR 59 142 -120 385 310 148 0 chr3 197623107 197623249 -20413909 - MIR SINE MIR -6 256 94 288 0 0 0 chr3 197623528 197623560 -20413598 + (T)n Simple_repeat Simple_repeat 1 32 0 556 278 17 51 chr3 197623727 197623903 -20413255 + MIR3 SINE MIR 36 205 -3 882 177 80 0 chr3 197623960 197624135 -20413023 - MER5A DNA MER1_type 0 189 1 2386 66 0 10 chr3 197624223 197624528 -20412630 - AluY SINE Alu -9 302 1 1574 109 0 9 chr3 197624734 197624954 -20412204 + AluSg/x SINE Alu 80 297 -15 630 230 155 10 chr3 197625122 197625322 -20411836 + MIR SINE MIR 34 262 0 1858 200 45 56 chr3 197627377 197627911 -20409247 - L1ME2 LINE L1 -14 6150 5623 483 290 159 71 chr3 197627961 197628457 -20408701 + L1MC5 LINE L1 7326 7865 -96 3003 182 82 17 chr3 197629164 197630038 -20407120 - MER45B DNA AcHobo -20 1020 11 1840 62 0 4 chr3 197630646 197630887 -20406271 - L1PA13 LINE L1 0 6163 5924 5710 74 34 12 chr3 197630896 197631694 -20405464 - L1PA10 LINE L1 -20 6148 5334 419 304 24 0 chr3 197632182 197632307 -20404851 + MIR3 SINE MIR 64 191 -17 22 0 0 0 chr3 197632819 197632841 -20404317 + AT_rich Low_complexity Low_complexity 1 22 0 479 312 85 0 chr3 197635206 197635405 -20401753 - MIR SINE MIR 0 262 47 254 239 0 30 chr3 197635469 197635536 -20401622 - L2 LINE L2 -3 3310 3246 231 182 18 0 chr3 197635572 197635627 -20401531 - L1MD3 LINE L1 0 7995 7940 215 273 0 45 chr3 197636202 197636268 -20400890 + L2 LINE L2 3241 3303 -10 339 296 48 24 chr3 197637708 197637833 -20399325 - MER5B DNA MER1_type -49 129 2 215 388 103 9 chr3 197637992 197638108 -20399050 - L2 LINE L2 -12 3260 3134 239 290 196 14 chr3 197638155 197638293 -20398865 - L2 LINE L2 0 3313 3151 368 20 20 0 chr3 197638373 197638422 -20398736 + (TG)n Simple_repeat Simple_repeat 2 51 0 192 182 0 0 chr3 197638823 197638867 -20398291 + GA-rich Low_complexity Low_complexity 1 44 0 25 31 0 0 chr3 197639226 197639258 -20397900 + AT_rich Low_complexity Low_complexity 1 32 0 34608 42 31 3 chr3 197640810 197645202 -20391956 + L1P LINE L1 3 4515 -1631 239 309 103 37 chr3 197645460 197645703 -20391455 + L1M4 LINE L1 3666 3924 -2222 443 271 123 29 chr3 197645720 197645964 -20391194 + L1M2 LINE L1 5383 5649 -663 2282 107 3 0 chr3 197646069 197646378 -20390780 + AluSg SINE Alu 1 310 0 1618 220 8 5 chr3 197647162 197647539 -20389619 + L1P4 LINE L1 4126 4503 -1643 2904 121 17 39 chr3 197647697 197648322 -20388836 + L1P4 LINE L1 5108 5702 -463 2938 136 25 47 chr3 197648323 197648854 -20388304 + L1PA15 LINE L1 5643 6161 -4 327 291 151 17 chr3 197650231 197650403 -20386755 - MIR SINE MIR -15 247 53 1251 123 0 11 chr3 197650492 197650679 -20386479 - L1PA15 LINE L1 -1 6164 5980 1052 174 5 0 chr3 197650780 197650970 -20386188 - L1P LINE L1 -1230 4916 4726 23 0 0 0 chr3 197651147 197651170 -20385988 + AT_rich Low_complexity Low_complexity 1 23 0 7101 57 2 4 chr3 197651219 197652817 -20384341 + L1PA5 LINE L1 4558 6154 0 617 304 141 10 chr3 197652841 197653259 -20383899 + L1MC5 LINE L1 1332 1804 -4592 931 214 95 46 chr3 197653428 197653541 -20383617 + L1ME3 LINE L1 5858 5964 -198 2014 136 10 7 chr3 197653541 197653842 -20383316 + AluSx SINE Alu 3 304 -8 931 214 95 46 chr3 197653842 197654013 -20383145 + L1ME3 LINE L1 5964 6156 -6 948 243 183 39 chr3 197654018 197654587 -20382571 + L1M4 LINE L1 3841 4537 -1609 5488 145 39 0 chr3 197654587 197655900 -20381258 - L1PA16 LINE L1 -9 6157 4823 948 243 183 39 chr3 197655900 197656050 -20381108 + L1M4 LINE L1 4537 4664 -1482 827 235 0 0 chr3 197656058 197656224 -20380934 + FRAM SINE Alu 1 166 -10 526 284 91 36 chr3 197656225 197656718 -20380440 + L1M4 LINE L1 4660 5179 -967 461 158 75 50 chr3 197657248 197657368 -20379790 + L1ME3A LINE L1 6042 6164 -6 182 36 0 36 chr3 197657577 197657605 -20379553 + (GAAA)n Simple_repeat Simple_repeat 4 30 0 657 287 67 58 chr3 197657674 197658727 -20378431 + L1MC5 LINE L1 4349 5417 -798 1560 185 3 45 chr3 197658785 197659072 -20378086 - AluJo SINE Alu -35 277 3 452 297 61 65 chr3 197659093 197659403 -20377755 + L1MC5 LINE L1 5671 5979 -1898 288 0 0 0 chr3 197659405 197659437 -20377721 + (TG)n Simple_repeat Simple_repeat 2 33 0 1665 208 37 3 chr3 197659544 197659871 -20377287 - MER2 DNA MER2_type -6 339 2 3760 216 74 48 chr3 197660143 197661405 -20375753 + L1MC5 LINE L1 6693 7986 -44 296 292 84 19 chr3 197662432 197662586 -20374572 - MIR SINE MIR 0 262 99 316 293 82 0 chr3 197663040 197663155 -20374003 + MIR SINE MIR 30 151 -63 2136 54 0 15 chr3 197663305 197663564 -20373594 + AluY SINE Alu 41 295 -16 2241 95 3 0 chr3 197664576 197664870 -20372288 + AluSg SINE Alu 1 295 -15 216 261 0 0 chr3 197666018 197666064 -20371094 - L2 LINE L2 -8 3264 3219 3397 89 0 10 chr3 197666140 197666622 -20370536 + L1PA13 LINE L1 5687 6163 0 268 245 0 0 chr3 197666683 197666732 -20370426 - L2 LINE L2 -202 3070 3022 32 0 0 0 chr3 197667428 197667460 -20369698 + AT_rich Low_complexity Low_complexity 1 32 0 293 233 83 25 chr3 197667550 197667670 -20369488 - MIR3 SINE MIR -72 136 10 42 48 0 0 chr3 197669281 197669344 -20367814 + AT_rich Low_complexity Low_complexity 1 63 0 34 24 0 0 chr3 197670704 197670745 -20366413 + AT_rich Low_complexity Low_complexity 1 41 0 1505 190 21 97 chr3 197670992 197671413 -20365745 + MLT1B LTR MaLR 1 389 -1 244 269 0 0 chr3 197672951 197673018 -20364140 + CT-rich Low_complexity Low_complexity 2 68 0 199 263 63 32 chr3 197673134 197673229 -20363929 + MIR SINE MIR 165 262 0 203 378 63 0 chr3 197673787 197673914 -20363244 + L2 LINE L2 3137 3271 -1 1855 168 26 7 chr3 197674458 197674831 -20362327 + L1MC2 LINE L1 4957 5321 -1023 2304 105 0 0 chr3 197674831 197675126 -20362032 + AluSg SINE Alu 1 295 -15 1855 168 26 7 chr3 197675126 197675938 -20361220 + L1MC2 LINE L1 5321 6336 -8 2210 117 3 0 chr3 197676129 197676427 -20360731 + AluSx SINE Alu 1 299 -13 267 298 132 26 chr3 197676986 197677100 -20360058 - L2 LINE L2 -8 3264 3139 682 298 73 28 chr3 197678244 197678441 -20358717 + MIR SINE MIR 2 214 -48 486 61 0 0 chr3 197678441 197678507 -20358651 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 682 298 73 28 chr3 197678507 197678557 -20358601 + MIR SINE MIR 214 260 -2 217 216 0 0 chr3 197678558 197678595 -20358563 + (CAT)n Simple_repeat Simple_repeat 1 37 0 298 327 62 0 chr3 197679588 197679701 -20357457 - L2 LINE L2 -5 3308 3189 753 189 8 0 chr3 197680893 197681058 -20356100 - FLAM_A SINE Alu 0 166 1 268 250 0 44 chr3 197681354 197681422 -20355736 - L2 LINE L2 -8 3305 3241 10936 156 34 21 chr3 197682842 197684843 -20352315 + ERVL LTR ERVL 2629 4653 -1111 294 27 0 0 chr3 197684843 197684880 -20352278 - L1P LINE L1 -2091 4055 4019 7083 58 0 2 chr3 197684881 197685888 -20351270 + L1PA5 LINE L1 5147 6151 -3 853 200 0 0 chr3 197685901 197686061 -20351097 + ERVL LTR ERVL 4650 4809 -955 213 94 0 0 chr3 197687110 197687142 -20350016 + (TG)n Simple_repeat Simple_repeat 2 33 0 290 263 253 37 chr3 197687648 197687838 -20349320 + MIR SINE MIR 17 247 -15 1498 171 66 49 chr3 197687877 197688163 -20348995 - AluJo SINE Alu -21 291 1 227 322 0 0 chr3 197688391 197688450 -20348708 - L2 LINE L2 -10 3303 3245 550 257 18 0 chr3 197688527 197688640 -20348518 + MER5B DNA MER1_type 58 172 -6 285 317 70 16 chr3 197690656 197690842 -20346316 - MER117 DNA MER1_type 0 197 2 220 239 22 145 chr3 197690852 197690895 -20346263 - L3 LINE CR1 -16 1561 1514 2503 69 0 0 chr3 197690895 197691198 -20345960 - AluY SINE Alu -8 303 1 220 239 22 145 chr3 197691198 197691292 -20345866 - L3 LINE CR1 -63 1514 1441 2360 72 3 38 chr3 197691736 197692056 -20345102 - AluSg SINE Alu -1 309 1 336 253 13 0 chr3 197694300 197694379 -20342779 + MIR3 SINE MIR 115 194 -14 434 248 60 15 chr3 197695039 197695172 -20341986 + MIR SINE MIR 59 197 -65 284 320 0 31 chr3 197695232 197695329 -20341829 - L2 LINE L2 -8 3264 3171 228 352 56 28 chr3 197695652 197695760 -20341398 - L2 LINE L2 -17 3296 3186 2634 7 51 0 chr3 197695908 197696204 -20340954 - AluYa5 SINE Alu 0 311 1 328 296 135 35 chr3 197698134 197698364 -20338794 + L1ME3 LINE L1 5632 5884 -278 243 277 15 0 chr3 197700263 197700328 -20336830 + MIR SINE MIR 20 85 -123 255 255 36 161 chr3 197700380 197700524 -20336634 - MER5B DNA MER1_type -7 171 55 2332 92 23 0 chr3 197700524 197700830 -20336328 + AluSq SINE Alu 1 313 0 255 255 36 161 chr3 197700830 197700877 -20336281 - MER5B DNA MER1_type -123 55 4 394 239 275 0 chr3 197700884 197701022 -20336136 - MER5A DNA MER1_type -5 184 9 204 229 0 0 chr3 197701032 197701080 -20336078 + MIR3 SINE MIR 155 202 -6 307 365 122 8 chr3 197701519 197701881 -20335277 - L2 LINE L2 -219 3053 2654 540 279 16 70 chr3 197701951 197702334 -20334824 + L1MC4a LINE L1 5665 6026 -95 21 57 0 0 chr3 197702539 197702574 -20334584 + AT_rich Low_complexity Low_complexity 1 35 0 506 277 186 0 chr3 197704672 197704849 -20332309 + MIR SINE MIR 33 242 -20 290 221 18 71 chr3 197704888 197705001 -20332157 + MIR3 SINE MIR 102 208 0 1251 146 82 67 chr3 197705240 197705555 -20331603 - MER33 DNA MER1_type 0 324 5 466 230 79 42 chr3 197706159 197706324 -20330834 + MIR SINE MIR 78 248 -14 423 301 34 27 chr3 197706321 197706467 -20330691 - MIR SINE MIR -96 166 20 * 308 301 114 16 chr3 197709114 197709237 -20327921 - L2 LINE L2 -26 3246 3112 289 321 9 9 chr3 197710064 197710170 -20326988 - MIR SINE MIR -80 128 23 369 244 80 66 chr3 197710636 197710849 -20326309 - L2 LINE L2 0 3313 3098 277 246 0 114 chr3 197711008 197711122 -20326036 + MIR SINE MIR 107 207 -55 4320 153 27 9 chr3 197712201 197712651 -20324507 + ERVL-B1 LTR ERVL 4969 5440 -324 411 21 0 0 chr3 197712651 197712699 -20324459 + (TA)n Simple_repeat Simple_repeat 1 48 0 4320 153 27 9 chr3 197712699 197713023 -20324135 + ERVL-B1 LTR ERVL 5440 5757 -7 2616 177 12 10 chr3 197713023 197713504 -20323654 + MLT2B1 LTR ERVL 1 482 -38 228 67 0 0 chr3 197713507 197713537 -20323621 + (CCTA)n Simple_repeat Simple_repeat 1 30 0 297 125 0 0 chr3 197713541 197713589 -20323569 + MLT2B1 LTR ERVL 470 517 -3 880 196 0 0 chr3 197713988 197714126 -20323032 + FRAM SINE Alu 2 139 -37 725 268 96 51 chr3 197714445 197714915 -20322243 + MLT1H LTR MaLR 59 549 0 332 43 22 0 chr3 197715052 197715098 -20322060 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 255 195 58 0 chr3 197715112 197715199 -20321959 + (TA)n Simple_repeat Simple_repeat 1 92 0 192 77 0 0 chr3 197715623 197715649 -20321509 + (T)n Simple_repeat Simple_repeat 1 26 0 1765 155 41 7 chr3 197715664 197715993 -20321165 - AluJb SINE Alu 0 312 12 779 297 82 82 chr3 197716108 197716741 -20320417 + L2 LINE L2 2272 2904 -410 342 275 28 28 chr3 197718440 197718618 -20318540 - L1ME4a LINE L1 -238 5883 5706 863 162 28 28 chr3 197719242 197719421 -20317737 + MLT1B LTR MaLR 3 181 -209 1125 298 108 46 chr3 197771801 197772831 -20264327 - L2 LINE L2 0 3313 2192 2082 118 7 20 chr3 197772831 197773135 -20264023 - AluSx SINE Alu -12 300 1 1125 298 108 46 chr3 197773135 197773327 -20263831 - L2 LINE L2 -1121 2192 2013 2195 112 0 3 chr3 197774731 197775025 -20262133 - AluSg SINE Alu -17 293 1 244 226 21 43 chr3 197776698 197776791 -20260367 - L2 LINE L2 -1 3312 3222 602 212 91 12 chr3 197776880 197777045 -20260113 - MER5B DNA MER1_type 0 178 1 308 331 56 8 chr3 197777471 197777625 -20259533 - MIR SINE MIR -6 202 41 2351 109 0 0 chr3 197777627 197777938 -20259220 + AluSq SINE Alu 1 311 -2 283 263 78 95 chr3 197777954 197778133 -20259025 - MIR3 SINE MIR 0 208 33 750 206 29 18 chr3 197778464 197778634 -20258524 - MER5B DNA MER1_type -5 173 2 1426 172 29 44 chr3 197778848 197779231 -20257927 + L1MD3 LINE L1 7619 7995 0 1653 171 7 10 chr3 197779242 197779535 -20257623 + AluSx SINE Alu 1 292 -20 213 280 0 0 chr3 197780204 197780254 -20256904 - MIR3 SINE MIR -17 191 142 480 313 68 11 chr3 197780521 197780697 -20256461 - MIR3 SINE MIR -22 186 1 27 29 0 0 chr3 197780895 197780929 -20256229 + AT_rich Low_complexity Low_complexity 1 34 0 260 335 72 36 chr3 197782992 197783159 -20253999 - MIR SINE MIR -1 261 89 1167 145 0 0 chr3 197783825 197783997 -20253161 - AluSg/x SINE Alu -7 305 134 2167 120 0 3 chr3 197783997 197784306 -20252852 - AluSx SINE Alu -4 308 1 21 0 0 0 chr3 197784315 197784336 -20252822 + AT_rich Low_complexity Low_complexity 1 21 0 493 309 32 72 chr3 197786601 197786879 -20250279 - L3b LINE CR1 -11 1572 1306 185 361 17 39 chr3 197787814 197787994 -20249164 + L2 LINE L2 1233 1408 -1906 1386 103 0 9 chr3 197788210 197788433 -20248725 - L1MA6 LINE L1 -1 6299 6079 230 354 116 44 chr3 197788892 197789073 -20248085 + L2 LINE L2 2744 2937 -377 297 261 87 56 chr3 197789170 197789365 -20247793 + L2 LINE L2 3113 3313 0 263 359 43 51 chr3 197789769 197790003 -20247155 - L2 LINE L2 -232 3040 2809 853 222 91 52 chr3 197790038 197790268 -20246890 + MIR SINE MIR 2 240 -22 194 366 91 41 chr3 197790282 197790765 -20246393 - L2 LINE L2 -542 2772 2266 2366 90 3 0 chr3 197790945 197791244 -20245914 + AluSq SINE Alu 1 300 -13 241 269 221 39 chr3 197792370 197792474 -20244684 + L2 LINE L2 3139 3261 -11 41 0 0 0 chr3 197792593 197792634 -20244524 + AT_rich Low_complexity Low_complexity 1 41 0 331 345 56 28 chr3 197793963 197794105 -20243053 + L2 LINE L2 3118 3263 -9 2051 100 0 0 chr3 197794679 197794939 -20242219 - AluSg SINE Alu -50 260 1 1754 136 4 0 chr3 197795586 197795858 -20241300 + AluSq SINE Alu 36 308 0 259 330 11 47 chr3 197796321 197796560 -20240598 - MLT1H LTR MaLR -124 285 54 240 346 20 40 chr3 197796623 197796724 -20240434 + L2 LINE L2 2936 3034 -279 216 294 135 0 chr3 197797784 197797910 -20239248 + MIR SINE MIR 82 224 -38 229 305 0 0 chr3 197798520 197798579 -20238579 + L3 LINE CR1 1517 1575 -2 23 0 0 0 chr3 197798755 197798778 -20238380 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 197799591 197799614 -20237544 + AT_rich Low_complexity Low_complexity 1 23 0 193 0 94 0 chr3 197799678 197799710 -20237448 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 529 217 43 0 chr3 197799980 197800095 -20237063 - L2 LINE L2 0 3313 3194 384 273 127 10 chr3 197800419 197800624 -20236534 + L1ME4a LINE L1 5806 6034 -87 21 0 0 0 chr3 197801516 197801537 -20235621 + AT_rich Low_complexity Low_complexity 1 21 0 260 27 27 0 chr3 197801681 197801718 -20235440 + (TG)n Simple_repeat Simple_repeat 2 39 0 200 226 16 0 chr3 197802658 197802720 -20234438 + GA-rich Low_complexity Low_complexity 1 63 0 26 30 0 0 chr3 197803455 197803488 -20233670 + AT_rich Low_complexity Low_complexity 1 33 0 224 30 30 0 chr3 197804459 197804492 -20232666 + (CAAAAA)n Simple_repeat Simple_repeat 1 34 0 469 271 24 65 chr3 197804834 197805004 -20232154 + MIR3 SINE MIR 39 201 -7 616 272 94 0 chr3 197805424 197805626 -20231532 + MIR SINE MIR 5 225 -37 208 234 0 21 chr3 197806577 197806624 -20230534 + L2 LINE L2 3219 3264 -8 2137 120 10 3 chr3 197806627 197806935 -20230223 - AluSq SINE Alu -3 310 1 1840 52 0 24 chr3 197807180 197807429 -20229729 + THE1B-int LTR MaLR 1338 1580 0 2074 141 72 23 chr3 197807429 197807776 -20229382 + THE1B LTR MaLR 1 364 0 4430 269 20 18 chr3 197807776 197809089 -20228069 - L1M3de LINE L1 -5232 1421 30 419 305 63 15 chr3 197809143 197809412 -20227746 - L1M3d LINE L1 -5609 282 1 382 279 12 29 chr3 197809578 197809750 -20227408 + CT-rich Low_complexity Low_complexity 2 170 0 1162 284 52 74 chr3 197810047 197810172 -20226986 - L1MEc LINE L1 -5268 1128 1002 2315 151 13 0 chr3 197810172 197810557 -20226601 - MLT1B LTR MaLR 0 390 1 1162 284 52 74 chr3 197810557 197810759 -20226399 - L1MEc LINE L1 -5394 1002 797 1244 72 0 12 chr3 197810759 197810925 -20226233 - L1PA11 LINE L1 0 6174 6011 1162 284 52 74 chr3 197810925 197811693 -20225465 - L1MEc LINE L1 -5599 797 56 2306 74 10 10 chr3 197812312 197812609 -20224549 + AluY SINE Alu 1 297 -14 233 246 0 0 chr3 197813062 197813123 -20224035 - L1P2 LINE L1 -565 5589 5529 239 305 32 21 chr3 197815487 197815582 -20221576 + MIR3 SINE MIR 1 96 -112 252 86 0 0 chr3 197817640 197817675 -20219483 + (A)n Simple_repeat Simple_repeat 1 35 0 366 241 90 35 chr3 197817709 197817854 -20219304 - L1MC5 LINE L1 -108 7853 7701 288 137 0 0 chr3 197818279 197818330 -20218828 + (TTCA)n Simple_repeat Simple_repeat 1 51 0 2407 78 0 3 chr3 197818757 197819063 -20218095 + AluY SINE Alu 1 305 -6 356 221 13 0 chr3 197819775 197819852 -20217306 - MIR SINE MIR -120 142 65 412 273 64 0 chr3 197820570 197820680 -20216478 + MIR SINE MIR 31 147 -61 1194 0 0 0 chr3 197820805 197820931 -20216227 - AluYb8 SINE Alu -192 126 1 483 270 122 11 chr3 197821096 197821285 -20215873 + L2 LINE L2 3104 3313 0 822 174 134 47 chr3 197821542 197821795 -20215363 + ORSL DNA AcHobo 1 275 0 497 289 102 3 chr3 197822711 197822912 -20214246 + MIR SINE MIR 45 262 0 218 50 17 83 chr3 197823055 197823115 -20214043 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 2011 145 50 34 chr3 197824252 197824610 -20212548 + THE1B LTR MaLR 1 364 0 5035 151 64 4 chr3 197825562 197826986 -20210172 + L1MA7 LINE L1 4789 6291 0 2067 188 56 17 chr3 197827261 197827671 -20209487 - MSTB LTR MaLR 0 426 1 387 214 160 15 chr3 197827800 197827931 -20209227 - HAL1b LINE L1 -958 390 241 327 207 25 33 chr3 197828304 197828425 -20208733 - HAL1b LINE L1 -549 799 680 439 256 31 25 chr3 197828464 197828624 -20208534 - HAL1b LINE L1 -757 591 431 * 2395 234 31 13 chr3 197828621 197829236 -20207922 + L1MC4 LINE L1 7210 7835 -207 337 311 44 7 chr3 197830860 197830995 -20206163 - L2 LINE L2 -7 3306 3167 431 257 132 7 chr3 197831227 197831379 -20205779 - MIR SINE MIR -6 256 86 215 105 53 0 chr3 197831652 197831690 -20205468 + A-rich Low_complexity Low_complexity 2 41 0 6659 17 1 10 chr3 197834211 197835077 -20202081 - L1PA3 LINE L1 -126 6029 5171 1065 221 89 13 chr3 197835086 197835905 -20201253 - L1ME2 LINE L1 -227 5943 5066 753 228 73 21 chr3 197835905 197836138 -20201020 + MLT1D LTR MaLR 251 495 -10 292 244 47 8 chr3 197836141 197836268 -20200890 - L1ME2 LINE L1 -1772 4374 4243 300 313 50 10 chr3 197836390 197836489 -20200669 + MIR SINE MIR 40 142 -120 557 277 58 70 chr3 197837053 197837483 -20199675 - L1MC4a LINE L1 -89 6032 5607 265 229 0 0 chr3 197837594 197837664 -20199494 - L1P5 LINE L1 -723 5431 5362 234 262 101 95 chr3 197837666 197837834 -20199324 + MIR SINE MIR 9 136 -72 21 0 0 0 chr3 197839881 197839902 -20197256 + AT_rich Low_complexity Low_complexity 1 21 0 588 241 177 0 chr3 197840220 197840378 -20196780 - MER5A DNA MER1_type 0 189 4 21 0 0 0 chr3 197843383 197843404 -20193754 + AT_rich Low_complexity Low_complexity 1 21 0 276 285 70 92 chr3 197843751 197843979 -20193179 - L3 LINE CR1 -35 1542 1320 262 244 89 11 chr3 197844033 197844123 -20193035 - MER5A DNA MER1_type -1 188 92 748 277 114 43 chr3 197844220 197844768 -20192390 + L2 LINE L2 1891 3312 -1 758 289 175 26 chr3 197844787 197845216 -20191942 - L3 LINE CR1 -439 1138 646 616 247 95 21 chr3 197845232 197845422 -20191736 + MIR SINE MIR 35 238 -24 275 292 0 0 chr3 197845421 197845486 -20191672 + L2 LINE L2 3197 3261 -11 * 452 350 38 38 chr3 197845492 197845758 -20191400 - L3 LINE CR1 -942 635 370 3790 167 38 34 chr3 197845772 197846564 -20190594 + L1MA5 LINE L1 11 805 -5984 6891 158 28 20 chr3 197847042 197849280 -20187878 + L1MA5 LINE L1 4627 6885 -57 362 313 18 0 chr3 197849736 197849848 -20187310 - MIR SINE MIR -119 143 30 1899 158 7 3 chr3 197849942 197850239 -20186919 + AluSx SINE Alu 1 298 -14 291 343 52 28 chr3 197850626 197850874 -20186284 + L2 LINE L2 3045 3298 -15 2625 222 97 26 chr3 197851181 197852363 -20184795 + L1M2 LINE L1 4214 5487 -711 695 226 0 0 chr3 197852363 197852496 -20184662 + FLAM_A SINE Alu 1 133 0 2625 222 97 26 chr3 197852496 197852517 -20184641 + L1M2 LINE L1 5487 5505 -693 278 294 24 0 chr3 197852612 197852697 -20184461 + GA-rich Low_complexity Low_complexity 2 88 0 250 270 7 92 chr3 197852698 197852850 -20184308 + L1MEd LINE L1 1083 1221 -4898 180 244 0 0 chr3 197852919 197852960 -20184198 - L2 LINE L2 -23 3249 3209 603 239 39 13 chr3 197853347 197853502 -20183656 - MIR SINE MIR -100 162 4 213 286 41 0 chr3 197853670 197853768 -20183390 + (TA)n Simple_repeat Simple_repeat 1 102 0 1743 170 3 45 chr3 197854279 197854590 -20182568 + AluSx SINE Alu 1 298 -14 5764 177 20 32 chr3 197855137 197856960 -20180198 - L1 LINE L1 -3630 3158 1352 648 331 38 28 chr3 197857085 197857478 -20179680 + ERVL LTR ERVL 4984 5380 -384 1681 153 35 28 chr3 197858027 197858348 -20178810 + AluJb SINE Alu 1 323 0 415 307 37 42 chr3 197858921 197859094 -20178064 - MIR SINE MIR -63 145 27 23 0 0 0 chr3 197859103 197859126 -20178032 + AT_rich Low_complexity Low_complexity 1 23 0 274 340 62 9 chr3 197860015 197860151 -20177007 + MIR SINE MIR 15 154 -66 257 75 25 0 chr3 197860220 197860260 -20176898 + (TTCC)n Simple_repeat Simple_repeat 4 44 0 27 0 0 0 chr3 197861365 197861392 -20175766 + AT_rich Low_complexity Low_complexity 1 27 0 240 270 34 34 chr3 197861551 197861640 -20175518 + MIR SINE MIR 160 248 -14 327 229 24 127 chr3 197863550 197863716 -20173442 + L2 LINE L2 3164 3312 -1 2718 35 0 0 chr3 197864028 197864342 -20172816 - AluYb8 SINE Alu -4 314 1 5350 196 39 7 chr3 197864352 197865609 -20171549 - L1 LINE L1 -2579 4986 3690 1881 247 47 53 chr3 197866939 197867011 -20170147 - L1 LINE L1 -3868 3697 3626 180 0 0 0 chr3 197867011 197867031 -20170127 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1881 247 47 53 chr3 197867031 197867054 -20170104 - L1 LINE L1 -3939 3626 3604 2080 135 0 0 chr3 197867054 197867351 -20169807 - AluSx SINE Alu -15 297 1 1881 247 47 53 chr3 197867351 197868145 -20169013 - L1 LINE L1 -3961 3604 2792 2276 109 7 0 chr3 197868361 197868665 -20168493 - AluSp SINE Alu -5 308 3 405 252 0 47 chr3 197868774 197868881 -20168277 + ERVL LTR ERVL 2210 2311 -3453 1358 139 5 0 chr3 197868881 197869083 -20168075 + L1MC/D LINE L1 5613 5815 -518 5636 128 3 73 chr3 197869273 197870855 -20166303 - L1PB1 LINE L1 -4 6147 4678 1786 333 46 41 chr3 197870906 197871956 -20165202 + ERVL LTR ERVL 2896 3950 -1814 1127 345 37 24 chr3 197872062 197872682 -20164476 + ERVL LTR ERVL 4084 4711 -1053 41 0 0 0 chr3 197873084 197873125 -20164033 + AT_rich Low_complexity Low_complexity 1 41 0 2629 152 13 4 chr3 197873242 197873709 -20163449 - L1MA4 LINE L1 -14 6286 5816 234 184 26 26 chr3 197873753 197873867 -20163291 + (TA)n Simple_repeat Simple_repeat 1 114 0 538 100 0 0 chr3 197873870 197873950 -20163208 - L1PA5 LINE L1 0 6154 6075 276 135 0 0 chr3 197873958 197874011 -20163147 - L1MA4 LINE L1 -394 5777 5725 27 0 0 0 chr3 197874011 197874038 -20163120 + AT_rich Low_complexity Low_complexity 1 27 0 334 135 157 56 chr3 197874292 197874381 -20162777 + L2 LINE L2 3193 3290 -23 183 80 0 0 chr3 197874390 197874415 -20162743 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 323 302 9 38 chr3 197874506 197874612 -20162546 + L2 LINE L2 3196 3298 -15 305 138 0 17 chr3 197878388 197878446 -20158712 + (TA)n Simple_repeat Simple_repeat 1 57 0 2111 106 3 13 chr3 197878896 197879197 -20157961 + AluSp SINE Alu 1 298 -15 3199 57 2 0 chr3 197879460 197879864 -20157294 - L1PA8 LINE L1 0 6172 5768 404 299 109 0 chr3 197880192 197880329 -20156829 - L2 LINE L2 0 3272 3121 5224 150 62 33 chr3 197880667 197881531 -20155627 - L1MC3 LINE L1 0 7785 6885 183 42 0 0 chr3 197881531 197881555 -20155603 + (TG)n Simple_repeat Simple_repeat 2 25 0 5224 150 62 33 chr3 197881555 197881729 -20155429 - L1MC3 LINE L1 -900 6885 6717 465 311 122 15 chr3 197881796 197881992 -20155166 + MIR SINE MIR 14 230 -32 508 326 0 7 chr3 197882335 197882482 -20154676 - MIR SINE MIR -106 156 11 2323 103 0 0 chr3 197882560 197882870 -20154288 - AluSg SINE Alu 0 310 1 276 224 0 0 chr3 197883186 197883235 -20153923 + MIR SINE MIR 78 126 -82 414 191 149 11 chr3 197884972 197885066 -20152092 - L2 LINE L2 0 3313 3207 251 345 44 0 chr3 197885219 197885332 -20151826 - L2 LINE L2 0 3313 3196 249 83 0 0 chr3 197886049 197886085 -20151073 + (TG)n Simple_repeat Simple_repeat 1 36 0 520 252 78 46 chr3 197886237 197886455 -20150703 + MIR SINE MIR 26 250 -12 192 40 0 0 chr3 197887187 197887212 -20149946 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 304 339 52 28 chr3 197887214 197887462 -20149696 - L2 LINE L2 -15 3298 3045 6083 100 19 6 chr3 197888296 197889280 -20147878 + L1PB2 LINE L1 5155 6149 -2 471 226 44 7 chr3 197889436 197889573 -20147585 - L1ME4a LINE L1 -3 6118 5977 1018 254 104 61 chr3 197889576 197890329 -20146829 + L1M4 LINE L1 2302 3086 -3060 351 241 52 79 chr3 197890341 197890631 -20146527 + L1M4 LINE L1 3187 3468 -2678 402 203 34 155 chr3 197890643 197890934 -20146224 + L1M4 LINE L1 3808 4063 -2083 259 320 0 0 chr3 197891024 197891099 -20146059 + L2 LINE L2 3198 3272 0 544 248 51 13 chr3 197891320 197891477 -20145681 + MIR SINE MIR 100 262 0 254 265 15 44 chr3 197891538 197891606 -20145552 + L2 LINE L2 3205 3270 -2 381 314 34 25 chr3 197891661 197891779 -20145379 - L2 LINE L2 0 3272 3154 7145 134 1 2 chr3 197892630 197894564 -20142594 - L1PA14 LINE L1 -1 6160 4227 419 50 17 0 chr3 197894665 197894725 -20142433 - Alu SINE Alu -9 303 243 1029 198 24 8 chr3 197894738 197894985 -20142173 - L1MDa LINE L1 -5240 1300 1050 468 0 0 0 chr3 197894990 197895042 -20142116 + (TA)n Simple_repeat Simple_repeat 1 52 0 332 213 115 16 chr3 197895042 197895120 -20142038 - AluJb SINE Alu -24 278 200 305 261 45 11 chr3 197895122 197895210 -20141948 - L1MDa LINE L1 -4009 2531 2441 386 297 78 57 chr3 197897517 197897709 -20139449 - L2 LINE L2 -680 2634 2439 1363 198 20 4 chr3 197898310 197898558 -20138600 + AluJb SINE Alu 1 252 -60 207 310 133 25 chr3 197898759 197898917 -20138241 + MIR SINE MIR 88 262 0 1888 157 3 6 chr3 197898985 197899298 -20137860 + AluSx SINE Alu 1 312 0 22 0 0 0 chr3 197900596 197900618 -20136540 + AT_rich Low_complexity Low_complexity 1 22 0 393 302 82 30 chr3 197900727 197900995 -20136163 + L1MC4 LINE L1 6758 7039 -1003 1245 203 9 0 chr3 197902241 197902458 -20134700 - MER58A DNA MER1_type 0 224 6 379 270 7 88 chr3 197902950 197903087 -20134071 + L2 LINE L2 3188 3313 0 718 293 87 60 chr3 197903161 197903611 -20133547 - LTR16B LTR ERVL -2 462 1 244 328 8 46 chr3 197904314 197904445 -20132713 - L2 LINE L2 -212 3060 2935 196 286 41 0 chr3 197905345 197905394 -20131764 + L2 LINE L2 3239 3289 -24 537 281 152 9 chr3 197906170 197906380 -20130778 + MIR SINE MIR 23 262 0 182 37 37 0 chr3 197908883 197908910 -20128248 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 414 0 0 0 chr3 197909221 197909267 -20127891 + (TG)n Simple_repeat Simple_repeat 1 46 0 260 238 176 77 chr3 197910600 197910923 -20126235 - HAL1b LINE L1 -2 1346 992 1961 240 103 67 chr3 197911026 197911965 -20125193 + L1M4 LINE L1 2192 3173 -2973 21 0 0 0 chr3 197912272 197912293 -20124865 + AT_rich Low_complexity Low_complexity 1 21 0 2229 254 70 32 chr3 197912639 197913673 -20123485 + L1M4 LINE L1 3127 4199 -1947 3334 94 13 0 chr3 197914052 197914518 -20122640 + L1PA10 LINE L1 5686 6157 -11 3093 214 34 17 chr3 197914925 197915755 -20121403 - L1M4c LINE L1 -4518 1785 824 2517 117 3 0 chr3 197915753 197916096 -20121062 + THE1-int LTR MaLR 624 967 -613 * 28 48 0 0 chr3 197917654 197917696 -20119462 + AT_rich Low_complexity Low_complexity 1 42 0 300 347 65 0 chr3 197917896 197918112 -20119046 - HAL1 LINE L1 -747 1760 1531 290 266 6 89 chr3 197918214 197918372 -20118786 - L1MEd LINE L1 -4892 1227 1083 263 286 26 0 chr3 197918373 197918450 -20118708 + CT-rich Low_complexity Low_complexity 2 80 0 23 0 0 0 chr3 197918549 197918572 -20118586 + AT_rich Low_complexity Low_complexity 1 23 0 2031 125 10 3 chr3 198019140 198019436 -20017722 + AluSx SINE Alu 1 298 -14 258 211 79 53 chr3 198019487 198019601 -20017557 - MER46C DNA MER2_type -221 117 1 1724 176 3 20 chr3 198019642 198019948 -20017210 + AluJo SINE Alu 1 301 -11 451 321 64 16 chr3 198019997 198020184 -20016974 - MIR SINE MIR -2 260 65 192 77 0 0 chr3 198020665 198020691 -20016467 + (T)n Simple_repeat Simple_repeat 1 26 0 282 106 0 0 chr3 198021759 198021806 -20015352 + (TCCA)n Simple_repeat Simple_repeat 1 47 0 306 388 10 0 chr3 198022208 198022311 -20014847 + T-rich Low_complexity Low_complexity 1 104 0 2233 123 0 0 chr3 198022452 198022744 -20014414 + AluSx SINE Alu 10 301 -11 22 0 0 0 chr3 198023106 198023128 -20014030 + AT_rich Low_complexity Low_complexity 1 22 0 185 111 56 0 chr3 198023553 198023589 -20013569 + L2 LINE L2 3021 3058 -255 249 275 0 25 chr3 198023607 198023687 -20013471 + MER2 DNA MER2_type 268 345 0 378 258 50 75 chr3 198025002 198025161 -20011997 + L2 LINE L2 3159 3313 0 186 347 11 11 chr3 198025287 198025382 -20011776 - MIR SINE MIR -72 136 42 1518 239 49 12 chr3 198025399 198025830 -20011328 - MLT1C LTR MaLR -7 460 18 247 304 13 57 chr3 198027566 198027724 -20009434 - LTR33A LTR ERVL -350 173 23 181 389 7 22 chr3 198027849 198027988 -20009170 + L2 LINE L2 2566 2702 -612 218 322 56 0 chr3 198028154 198028244 -20008914 + L2 LINE L2 2937 3031 -241 268 338 88 37 chr3 198028423 198028639 -20008519 + MIR SINE MIR 7 233 -29 236 118 151 172 chr3 198028775 198028961 -20008197 - L1MC4 LINE L1 0 8042 7861 2117 125 0 28 chr3 198029444 198029765 -20007393 - AluSx SINE Alu 0 312 1 1237 156 0 38 chr3 198029791 198030003 -20007155 - AluSq SINE Alu -95 218 15 205 156 0 0 chr3 198030038 198030070 -20007088 - MIR SINE MIR -24 238 207 3549 185 31 10 chr3 198031090 198031890 -20005268 - L1 LINE L1 -970 5176 4360 1957 91 87 0 chr3 198032473 198032748 -20004410 + AluSx SINE Alu 1 299 -13 24 0 0 0 chr3 198033106 198033130 -20004028 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr3 198033130 198033153 -20004005 + GC_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 198033193 198033216 -20003942 + GC_rich Low_complexity Low_complexity 1 23 0 26 64 0 0 chr3 198033386 198033433 -20003725 + AT_rich Low_complexity Low_complexity 1 47 0 1740 181 0 0 chr3 198033437 198033708 -20003450 + AluSx SINE Alu 5 275 -37 459 80 80 0 chr3 198033715 198033827 -20003331 + (TA)n Simple_repeat Simple_repeat 2 122 0 425 317 7 14 chr3 198035312 198035454 -20001704 + Tigger8 DNA MER2_type 287 427 -239 971 212 22 31 chr3 198035926 198036152 -20001006 - MER58A DNA MER1_type 0 224 1 1672 168 25 0 chr3 198037069 198037195 -19999963 + AluJb SINE Alu 6 127 -185 2053 89 34 17 chr3 198037195 198037488 -19999670 + AluSq SINE Alu 1 298 -15 1672 168 25 0 chr3 198037488 198037646 -19999512 + AluJb SINE Alu 127 297 -15 15026 119 59 42 chr3 198038370 198038781 -19998377 + Tigger4(Zombi) DNA MER2_type 2 405 -2326 2103 117 0 0 chr3 198038781 198039064 -19998094 - AluSx SINE Alu -27 285 3 15026 119 59 42 chr3 198039064 198041338 -19995820 + Tigger4(Zombi) DNA MER2_type 405 2731 0 7380 39 4 3 chr3 198041487 198043137 -19994021 - L1PA5 LINE L1 -4 6150 4501 949 57 0 0 chr3 198043139 198043261 -19993897 + L1PA5 LINE L1 4380 4501 -1645 1981 187 63 53 chr3 198043290 198043985 -19993173 - L1MB7 LINE L1 -66 6118 5432 1160 206 137 8 chr3 198043985 198044247 -19992911 - AluJo SINE Alu -6 296 1 1981 187 63 53 chr3 198044247 198044313 -19992845 - L1MB7 LINE L1 -752 5432 5368 2371 80 0 26 chr3 198044313 198044625 -19992533 - AluY SINE Alu -7 304 1 1981 187 63 53 chr3 198044625 198044698 -19992460 - L1MB7 LINE L1 -816 5368 5099 441 241 72 30 chr3 198046078 198046244 -19990914 - L1ME3A LINE L1 -11 6159 5987 1606 165 20 26 chr3 198046333 198046636 -19990522 - AluJo SINE Alu -11 301 1 2098 119 0 7 chr3 198046676 198046969 -19990189 + AluSx SINE Alu 1 291 -21 1657 99 116 83 chr3 198046998 198047142 -19990016 - AluSx SINE Alu 0 312 174 2264 93 0 20 chr3 198047142 198047444 -19989714 - AluSc SINE Alu -13 296 1 1657 99 116 83 chr3 198047444 198047601 -19989557 - AluSx SINE Alu -138 174 1 180 111 0 0 chr3 198048548 198048575 -19988583 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 25 65 0 0 chr3 198048856 198048902 -19988256 + AT_rich Low_complexity Low_complexity 1 46 0 820 215 65 5 chr3 198052424 198052624 -19984534 + LTR37A LTR ERV1 150 361 -65 271 194 113 0 chr3 198052702 198052764 -19984394 + MER5A DNA MER1_type 11 79 -110 725 226 21 26 chr3 198053233 198053273 -19983885 + MER5A DNA MER1_type 1 40 -149 1788 171 31 0 chr3 198053273 198053560 -19983598 - AluJb SINE Alu -16 296 1 725 226 21 26 chr3 198053560 198053709 -19983449 + MER5A DNA MER1_type 40 189 0 2855 3 0 0 chr3 198053821 198054127 -19983031 - AluY SINE Alu -5 306 1 315 257 9 28 chr3 198054746 198054855 -19982303 - L1MC5 LINE L1 -46 7915 7809 21 0 0 0 chr3 198054894 198054915 -19982243 + AT_rich Low_complexity Low_complexity 1 21 0 625 176 0 24 chr3 198055040 198055165 -19981993 + FLAM_C SINE Alu 1 122 -11 1702 167 27 14 chr3 198055181 198055474 -19981684 + AluJb SINE Alu 1 297 -15 25 0 0 0 chr3 198056470 198056495 -19980663 + AT_rich Low_complexity Low_complexity 1 25 0 2112 105 18 0 chr3 198057156 198057441 -19979717 - AluSg1 SINE Alu -19 290 1 2137 114 0 26 chr3 198057645 198057951 -19979207 + AluSx SINE Alu 1 298 -14 2232 100 0 13 chr3 198058614 198058915 -19978243 - AluSx SINE Alu -15 297 1 24 0 0 0 chr3 198060852 198060876 -19976282 + AT_rich Low_complexity Low_complexity 1 24 0 1514 248 121 53 chr3 198061936 198062923 -19974235 + HAL1 LINE L1 38 1210 -1297 2308 77 0 39 chr3 198062923 198063272 -19973886 + AluSx SINE Alu 1 312 0 1514 248 121 53 chr3 198063272 198063477 -19973681 + HAL1 LINE L1 1210 1400 -1107 571 275 87 38 chr3 198063478 198063823 -19973335 + HAL1 LINE L1 1971 2332 -175 408 222 175 0 chr3 198063823 198063949 -19973209 + FLAM_A SINE Alu 1 131 -2 248 307 30 40 chr3 198064895 198064996 -19972162 + MIR SINE MIR 48 147 -115 456 143 10 71 chr3 198065181 198065279 -19971879 - MER46C DNA MER2_type -1 337 246 304 302 38 9 chr3 198065821 198065927 -19971231 - HAL1b LINE L1 -841 507 399 2121 133 0 7 chr3 198066026 198066327 -19970831 - AluSx SINE Alu -13 299 1 2697 231 32 66 chr3 198066433 198066590 -19970568 + L1MEc LINE L1 38 199 -6197 2055 107 11 0 chr3 198066590 198066896 -19970262 + AluSx SINE Alu 1 309 0 2697 231 32 66 chr3 198066896 198067908 -19969250 + L1MEc LINE L1 199 1289 -5107 2248 111 0 13 chr3 198067921 198068237 -19968921 + AluSx SINE Alu 1 312 0 1412 129 118 43 chr3 198068277 198068556 -19968602 + AluJb SINE Alu 1 300 -12 260 274 0 12 chr3 198068556 198068640 -19968518 + L1MEc LINE L1 3074 3156 -3059 2264 93 3 7 chr3 198068641 198068942 -19968216 + AluSp SINE Alu 1 300 -13 2385 94 0 0 chr3 198068942 198069251 -19967907 + AluSc SINE Alu 1 309 0 2094 103 69 17 chr3 198069291 198069641 -19967517 + THE1C LTR MaLR 8 375 0 271 221 87 10 chr3 198069643 198069747 -19967411 + L1MEc LINE L1 3176 3287 -2928 183 42 0 0 chr3 198069763 198069787 -19967371 + (TAGA)n Simple_repeat Simple_repeat 3 26 0 1609 216 10 31 chr3 198069793 198070177 -19966981 - MLT1B LTR MaLR -9 381 6 380 266 125 5 chr3 198070194 198070386 -19966772 + L1MEc LINE L1 3327 3541 -2674 305 91 109 0 chr3 198070391 198070446 -19966712 + L1MA9 LINE L1 6243 6303 -9 21 0 0 0 chr3 198070726 198070747 -19966411 + AT_rich Low_complexity Low_complexity 1 21 0 387 221 74 13 chr3 198070900 198071049 -19966109 + L1MEc LINE L1 3915 4072 -2143 1756 141 7 44 chr3 198071597 198071894 -19965264 + AluJo SINE Alu 1 286 -26 21 0 0 0 chr3 198071894 198071915 -19965243 + AT_rich Low_complexity Low_complexity 1 21 0 459 317 21 31 chr3 198071943 198072133 -19965025 - MIR SINE MIR -62 146 6 2057 137 13 0 chr3 198072311 198072618 -19964540 + AluJb SINE Alu 2 312 0 195 337 53 32 chr3 198073369 198073464 -19963694 - L2 LINE L2 -5 3267 3171 324 128 0 0 chr3 198073557 198073604 -19963554 + MER66A LTR ERV1 291 337 -141 41 21 0 0 chr3 198073604 198073652 -19963506 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr3 198074534 198074555 -19962603 + AT_rich Low_complexity Low_complexity 1 21 0 1770 143 71 10 chr3 198076805 198077099 -19960059 - AluSx SINE Alu 0 312 1 2377 102 0 6 chr3 198077598 198077913 -19959245 + AluSq SINE Alu 1 313 0 228 167 0 0 chr3 198079499 198079547 -19957611 + (TA)n Simple_repeat Simple_repeat 1 48 0 1932 138 7 36 chr3 198079548 198079852 -19957306 - AluSx SINE Alu -17 295 1 213 39 0 0 chr3 198079858 198079884 -19957274 + (TA)n Simple_repeat Simple_repeat 2 27 0 1222 119 83 10 chr3 198079884 198080077 -19957081 - AluSg/x SINE Alu -22 290 84 878 173 88 49 chr3 198080466 198080692 -19956466 - L1MB7 LINE L1 -19 6165 5931 1604 236 8 16 chr3 198081066 198081443 -19955715 + Charlie8 DNA MER1_type 1449 1822 -595 295 174 232 0 chr3 198081478 198081547 -19955611 - L2 LINE L2 -34 3279 3195 531 255 60 20 chr3 198081566 198081757 -19955401 + Charlie8 DNA MER1_type 1847 2048 -369 875 138 0 0 chr3 198081757 198081887 -19955271 + FLAM_C SINE Alu 1 130 -3 2319 80 3 0 chr3 198082215 198082503 -19954655 - AluY SINE Alu -22 289 1 264 279 57 33 chr3 198082801 198082914 -19954244 - MIR SINE MIR -48 214 94 2087 95 16 33 chr3 198082914 198083219 -19953939 + AluSc SINE Alu 1 300 -9 228 257 150 64 chr3 198083299 198083439 -19953719 - L2 LINE L2 -309 2963 2812 493 251 134 35 chr3 198083486 198083657 -19953501 + MIR SINE MIR 16 203 -59 1979 115 10 17 chr3 198084025 198084320 -19952838 - AluJo SINE Alu -19 293 1 2291 102 0 0 chr3 198084884 198085179 -19951979 - AluSx SINE Alu -13 299 5 1169 274 164 24 chr3 198085965 198086735 -19950423 + L2 LINE L2 2301 3205 -108 2104 148 0 0 chr3 198086735 198087040 -19950118 + AluSx SINE Alu 1 305 -7 1169 274 164 24 chr3 198087040 198087109 -19950049 + L2 LINE L2 3205 3263 -50 186 103 0 0 chr3 198088080 198088109 -19949049 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1460 233 83 13 chr3 198088491 198088886 -19948272 + LTR40c LTR ERVL 35 457 -8 662 323 52 46 chr3 198088962 198089461 -19947697 + L2 LINE L2 998 1499 -1815 408 20 0 0 chr3 198089480 198089529 -19947629 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 1491 169 37 22 chr3 198089529 198089802 -19947356 - AluJb SINE Alu -35 277 1 1666 186 0 14 chr3 198089879 198090169 -19946989 - AluJo SINE Alu -26 286 1 638 264 115 56 chr3 198090305 198090687 -19946471 - L1MC5 LINE L1 -99 7862 7516 2143 120 3 7 chr3 198090687 198090986 -19946172 + AluSx SINE Alu 1 298 -14 638 264 115 56 chr3 198090986 198091278 -19945880 - L1MC5 LINE L1 -445 7516 7243 242 260 87 40 chr3 198091390 198091540 -19945618 + L2 LINE L2 1698 1854 -1460 805 179 6 64 chr3 198092871 198093044 -19944114 + FRAM SINE Alu 1 162 -14 817 271 94 35 chr3 198093097 198093821 -19943337 + L1ME3A LINE L1 5171 5951 -219 2001 157 0 6 chr3 198093851 198094163 -19942995 + AluSx SINE Alu 1 310 -2 887 164 19 13 chr3 198094187 198094346 -19942812 + FRAM SINE Alu 5 164 -12 211 146 24 0 chr3 198094447 198094488 -19942670 + A-rich Low_complexity Low_complexity 4 45 0 339 299 178 0 chr3 198094488 198094595 -19942563 - MIR SINE MIR -133 129 4 282 306 76 25 chr3 198094640 198094797 -19942361 + L2 LINE L2 1979 2143 -1171 189 0 0 0 chr3 198094883 198094904 -19942254 + (A)n Simple_repeat Simple_repeat 1 21 0 1979 105 33 7 chr3 198095527 198095842 -19941316 + AluSp SINE Alu 1 322 0 331 271 221 0 chr3 198096385 198096507 -19940651 - L2 LINE L2 -1 3271 3123 828 205 48 138 chr3 198096511 198096716 -19940442 - MER46C DNA MER2_type 0 338 179 1913 113 11 4 chr3 198096716 198096991 -19940167 + AluSx SINE Alu 22 298 -14 828 205 48 138 chr3 198096991 198097156 -19940002 - MER46C DNA MER2_type -159 179 1 1816 166 3 19 chr3 198097197 198097504 -19939654 + AluJo SINE Alu 1 302 -10 596 240 113 27 chr3 198097560 198097781 -19939377 - MIR SINE MIR -10 252 13 349 271 103 9 chr3 198097745 198097852 -19939306 + MIR SINE MIR 75 191 -71 * 181 188 43 87 chr3 198098036 198098105 -19939053 - L3b LINE CR1 -230 1353 1288 1032 203 28 0 chr3 198098417 198098599 -19938559 + MER5A DNA MER1_type 3 189 0 1986 161 110 59 chr3 198098761 198099340 -19937818 + MER4A LTR ERV1 1 465 0 213 65 0 0 chr3 198100285 198100316 -19936842 + (GA)n Simple_repeat Simple_repeat 2 32 0 197 265 0 0 chr3 198100492 198100541 -19936617 - L2 LINE L2 -1 3312 3264 1769 153 64 16 chr3 198100597 198100864 -19936294 - MER7A DNA MER2_type -2692 346 62 2109 110 0 57 chr3 198100864 198101181 -19935977 + AluSx SINE Alu 1 299 -13 1769 153 64 16 chr3 198101181 198101227 -19935931 - MER7A DNA MER2_type -2976 62 20 2390 69 3 7 chr3 198101228 198101519 -19935639 - AluSq SINE Alu -23 290 1 1244 196 40 73 chr3 198102040 198102341 -19934817 - AluJo SINE Alu -10 292 2 255 245 20 92 chr3 198102401 198102499 -19934659 + MARNA DNA Mariner 287 377 -209 2145 112 11 0 chr3 198102669 198102955 -19934203 + AluSx SINE Alu 1 289 -23 939 191 0 0 chr3 198103982 198104129 -19933029 + AluJb SINE Alu 141 287 -25 22 0 0 0 chr3 198104443 198104465 -19932693 + AT_rich Low_complexity Low_complexity 1 22 0 2071 150 3 3 chr3 198104691 198104998 -19932160 - AluJb SINE Alu -5 307 1 263 216 149 0 chr3 198105064 198105138 -19932020 + L1ME LINE L1 5735 5819 -302 251 329 0 0 chr3 198105631 198105704 -19931454 + MIR SINE MIR 3 75 -187 877 278 151 19 chr3 198106290 198106721 -19930437 - L2 LINE L2 0 3313 2826 180 0 0 0 chr3 198106759 198106779 -19930379 + (A)n Simple_repeat Simple_repeat 1 20 0 843 178 102 25 chr3 198106785 198106942 -19930216 - AluJb SINE Alu -22 290 122 730 215 97 113 chr3 198106955 198107345 -19929813 - L2 LINE L2 -572 2742 2359 432 328 150 20 chr3 198107345 198107592 -19929566 - L2 LINE L2 -1279 2035 1757 304 47 47 0 chr3 198107634 198107677 -19929481 - AluY SINE Alu -255 45 1 951 257 163 13 chr3 198107679 198108157 -19929001 - L1MC4a LINE L1 -1285 6523 5974 897 137 0 34 chr3 198108209 198108355 -19928803 + FLAM_C SINE Alu 1 141 -2 295 324 117 7 chr3 198108355 198108500 -19928658 - L2 LINE L2 -1565 1749 1589 381 307 39 20 chr3 198108909 198109062 -19928096 + MIR SINE MIR 3 158 -104 203 384 0 0 chr3 198111224 198111310 -19925848 + MIR3 SINE MIR 117 202 -6 359 298 149 0 chr3 198111348 198111536 -19925622 + MIR SINE MIR 47 262 0 354 264 161 0 chr3 198112347 198112502 -19924656 - MIR SINE MIR -20 242 63 1946 103 72 3 chr3 198112543 198112834 -19924324 - AluSx SINE Alu -1 311 1 212 361 84 8 chr3 198113656 198113775 -19923383 + L2 LINE L2 3186 3313 0 311 373 37 15 chr3 198114754 198114888 -19922270 + MIR3 SINE MIR 20 156 -52 238 309 65 24 chr3 198114898 198115021 -19922137 - MER117 DNA MER1_type -6 191 64 1770 219 144 7 chr3 198115091 198115520 -19921638 - MLT1G1 LTR MaLR -6 589 102 1084 149 104 10 chr3 198115520 198115721 -19921437 - AluSg/x SINE Alu -8 302 83 266 246 16 0 chr3 198115733 198115794 -19921364 - MLT1G1 LTR MaLR -533 62 1 1065 223 135 56 chr3 198115984 198116339 -19920819 - L1ME1 LINE L1 -25 6141 5759 2417 90 0 0 chr3 198117314 198117615 -19919543 - AluSg SINE Alu -9 301 1 1395 178 96 10 chr3 198117939 198118253 -19918905 + MER2 DNA MER2_type 4 344 -1 390 271 56 26 chr3 198118408 198118587 -19918571 - MIR SINE MIR -51 211 30 2276 104 3 16 chr3 198118813 198119130 -19918028 + AluSq SINE Alu 1 313 0 848 160 8 15 chr3 198120080 198120211 -19916947 - FLAM_A SINE Alu 0 133 4 30 27 0 0 chr3 198120219 198120256 -19916902 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr3 198120636 198120657 -19916501 + AT_rich Low_complexity Low_complexity 1 21 0 2337 42 0 0 chr3 198120663 198120926 -19916232 + AluY SINE Alu 36 298 -13 258 136 0 0 chr3 198121563 198121607 -19915551 + (TG)n Simple_repeat Simple_repeat 1 44 0 349 350 15 7 chr3 198121821 198121958 -19915200 + MIR SINE MIR 3 140 -122 2193 114 7 0 chr3 198121969 198122259 -19914899 + AluSx SINE Alu 1 292 -20 366 258 189 8 chr3 198122876 198123008 -19914150 - MIR SINE MIR -22 240 85 736 216 31 6 chr3 198123342 198123504 -19913654 + L1MA9 LINE L1 6096 6261 -51 675 48 0 0 chr3 198123504 198123588 -19913570 + MER4B LTR ERV1 1 84 -526 785 204 8 0 chr3 198123590 198123722 -19913436 + AluJo SINE Alu 2 134 -178 1746 62 0 27 chr3 198124734 198124958 -19912200 + AluY SINE Alu 1 218 -93 800 133 0 44 chr3 198125206 198125371 -19911787 - FLAM_C SINE Alu 0 163 5 2258 125 0 0 chr3 198125420 198125723 -19911435 - AluSx SINE Alu -9 303 1 1467 187 14 7 chr3 198126439 198126723 -19910435 - AluJo SINE Alu -25 287 2 339 279 87 19 chr3 198126854 198126958 -19910200 - L2 LINE L2 -14 3258 3148 186 157 0 98 chr3 198127090 198127141 -19910017 + L2 LINE L2 3265 3310 -3 21 0 0 0 chr3 198127442 198127463 -19909695 + AT_rich Low_complexity Low_complexity 1 21 0 1031 153 0 0 chr3 198127466 198127623 -19909535 + FRAM SINE Alu 3 159 -17 2356 100 3 0 chr3 198127626 198127937 -19909221 + AluSp SINE Alu 1 312 -1 3995 150 75 31 chr3 198127937 198128732 -19908426 + MER4D LTR ERV1 72 659 -5 391 52 17 0 chr3 198128732 198128790 -19908368 + L1MA9 LINE L1 6254 6312 0 6977 116 47 60 chr3 198129342 198129970 -19907188 + Tigger3b DNA MER2_type 1 636 -2392 1516 117 14 0 chr3 198129970 198130184 -19906974 - AluY SINE Alu -23 288 72 6977 116 47 60 chr3 198130184 198130310 -19906848 + Tigger3b DNA MER2_type 636 762 -2266 2457 70 0 0 chr3 198130310 198130609 -19906549 + AluY SINE Alu 1 299 -12 6977 116 47 60 chr3 198130609 198131100 -19906058 + Tigger3b DNA MER2_type 762 1231 0 270 239 134 0 chr3 198131268 198131335 -19905823 + L1ME4a LINE L1 5551 5626 -495 391 292 141 50 chr3 198131340 198131744 -19905414 + L1ME4a LINE L1 5665 6105 -16 183 80 0 0 chr3 198131745 198131770 -19905388 + (TTTCC)n Simple_repeat Simple_repeat 1 25 0 1780 180 26 7 chr3 198131770 198132076 -19905082 - AluJb SINE Alu 0 312 1 2357 77 0 10 chr3 198132294 198132594 -19904564 + AluY SINE Alu 1 297 -14 589 141 40 0 chr3 198132702 198132801 -19904357 - L1MD2 LINE L1 0 6359 6257 889 232 0 6 chr3 198132823 198133034 -19904124 - AluJo SINE Alu 0 325 116 804 214 7 0 chr3 198133467 198133612 -19903546 + FRAM SINE Alu 12 157 -19 2115 123 3 0 chr3 198133643 198133936 -19903222 - AluSx SINE Alu -18 294 1 895 228 47 105 chr3 198134102 198134160 -19902998 - MSTC LTR MaLR 0 428 368 898 228 0 12 chr3 198134160 198134327 -19902831 - FRAM SINE Alu 0 166 2 895 228 47 105 chr3 198134327 198134520 -19902638 - MSTC LTR MaLR -60 368 165 2050 119 10 16 chr3 198134520 198134831 -19902327 - AluSc SINE Alu 0 309 1 895 228 47 105 chr3 198134831 198134842 -19902316 - MSTC LTR MaLR -263 165 155 2251 105 0 3 chr3 198134842 198135184 -19901974 - AluSc SINE Alu 0 341 1 895 228 47 105 chr3 198135184 198135364 -19901794 - MSTC LTR MaLR -273 155 8 3794 222 36 155 chr3 198135364 198137004 -19900154 - MSTD-int LTR MaLR -3 1648 258 805 164 0 0 chr3 198137004 198137120 -19900038 + FLAM_C SINE Alu 3 118 -15 3794 222 36 155 chr3 198137120 198137351 -19899807 - MSTD-int LTR MaLR -1393 258 1 1982 222 23 5 chr3 198137353 198137740 -19899418 - MSTD LTR MaLR -2 394 1 277 42 21 21 chr3 198137923 198137971 -19899187 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 1061 185 10 35 chr3 198137979 198138120 -19899038 - AluJb SINE Alu -35 277 141 2979 104 41 2 chr3 198138120 198138532 -19898626 + MSTA LTR MaLR 1 428 0 1061 185 10 35 chr3 198138532 198138590 -19898568 - AluJb SINE Alu -171 141 83 1538 235 40 38 chr3 198139302 198139697 -19897461 + MSTD LTR MaLR 1 396 0 2690 29 3 3 chr3 198140254 198140563 -19896595 - AluY SINE Alu -2 309 1 1471 165 12 93 chr3 198140731 198141052 -19896106 - AluJo SINE Alu -17 295 1 27 62 0 0 chr3 198141269 198141317 -19895841 + AT_rich Low_complexity Low_complexity 1 48 0 1852 155 28 3 chr3 198141317 198141608 -19895550 - AluJb SINE Alu -14 298 1 24 67 0 0 chr3 198142740 198142785 -19894373 + AT_rich Low_complexity Low_complexity 1 45 0 241 250 15 29 chr3 198143380 198143448 -19893710 - MIR3 SINE MIR -3 205 139 615 206 41 0 chr3 198143496 198143642 -19893516 - LTR37B LTR ERV1 -4 464 313 2848 209 30 59 chr3 198143761 198144249 -19892909 - MER82 DNA MER2_type 0 653 152 261 0 0 0 chr3 198144249 198144278 -19892880 + (TG)n Simple_repeat Simple_repeat 2 30 0 2848 209 30 59 chr3 198144278 198144413 -19892745 - MER82 DNA MER2_type -501 152 49 2465 68 0 6 chr3 198144413 198144724 -19892434 - AluY SINE Alu -2 309 1 2848 209 30 59 chr3 198144724 198144772 -19892386 - MER82 DNA MER2_type -604 49 1 1941 133 11 0 chr3 198145071 198145375 -19891783 + AluSx SINE Alu 1 307 0 2040 109 4 0 chr3 198145382 198145657 -19891501 + AluSg1 SINE Alu 28 303 -6 5157 149 55 25 chr3 198146791 198147097 -19890061 + MER49 LTR ERV1 5 300 -623 207 0 0 0 chr3 198147097 198147120 -19890038 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5157 149 55 25 chr3 198147120 198147181 -19889977 + MER49 LTR ERV1 300 358 -565 2153 122 3 3 chr3 198147181 198147477 -19889681 + AluSx SINE Alu 1 296 -16 5157 149 55 25 chr3 198147477 198148000 -19889158 + MER49 LTR ERV1 358 923 0 2057 145 6 3 chr3 198148115 198148426 -19888732 + AluJb SINE Alu 1 312 0 281 26 26 0 chr3 198148432 198148470 -19888688 + (TA)n Simple_repeat Simple_repeat 1 39 0 21 36 0 0 chr3 198148486 198148514 -19888644 + AT_rich Low_complexity Low_complexity 1 28 0 1544 172 8 26 chr3 198148794 198149062 -19888096 + AluJo SINE Alu 29 291 -21 262 348 0 9 chr3 198149460 198149572 -19887586 + L1MDa LINE L1 27 137 -6403 209 163 20 0 chr3 198149803 198149852 -19887306 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 2247 184 126 24 chr3 198149862 198150323 -19886835 - MLT2B3 LTR ERVL -46 508 1 823 229 116 0 chr3 198150336 198150594 -19886564 + L1MDa LINE L1 1036 1323 -5217 21 36 0 0 chr3 198150647 198150675 -19886483 + AT_rich Low_complexity Low_complexity 1 28 0 630 308 103 28 chr3 198150881 198151268 -19885890 - MLT1J LTR MaLR 0 511 96 925 306 69 75 chr3 198151306 198151799 -19885359 + L1M2a LINE L1 4 493 -6675 2626 240 18 46 chr3 198151802 198153079 -19884079 + L1M2a LINE L1 1289 2525 -4573 337 167 17 0 chr3 198153215 198153275 -19883883 - LTR5 LTR ERVK -894 75 15 587 113 43 0 chr3 198153656 198153771 -19883387 + GA-rich Low_complexity Low_complexity 3 122 0 761 206 0 0 chr3 198153804 198153935 -19883223 + FLAM_A SINE Alu 1 131 -2 273 146 0 0 chr3 198153969 198154017 -19883141 + (GGAA)n Simple_repeat Simple_repeat 4 51 0 542 242 29 31 chr3 198154017 198154040 -19883118 + L1MDa LINE L1 1431 1453 -5088 2691 40 3 0 chr3 198154040 198154344 -19882814 + AluY SINE Alu 1 305 -6 542 242 29 31 chr3 198154344 198154517 -19882641 + L1MDa LINE L1 1453 2025 -4516 752 213 0 0 chr3 198154519 198154646 -19882512 + FLAM_A SINE Alu 1 127 -6 1324 211 4 14 chr3 198154646 198154965 -19882193 + AluSx SINE Alu 41 356 0 454 208 8 8 chr3 198154965 198155095 -19882063 + GA-rich Low_complexity Low_complexity 3 132 0 2317 251 55 26 chr3 198155097 198156410 -19880748 + L1M2 LINE L1 2709 4067 -3498 250 232 32 0 chr3 198156409 198156504 -19880654 - L1 LINE L1 -3007 3139 3042 * 2845 174 14 44 chr3 198156504 198157605 -19879553 + L1M2 LINE L1 6147 7210 -521 435 262 128 6 chr3 198157623 198157795 -19879363 - LTR16A LTR ERVL 0 450 258 2238 112 7 0 chr3 198157841 198158145 -19879013 - AluSg SINE Alu -4 306 1 3945 74 5 60 chr3 198158170 198158563 -19878595 - L1PA7 LINE L1 0 6154 5800 2491 68 0 7 chr3 198158563 198158871 -19878287 - AluY SINE Alu -5 306 1 3945 74 5 60 chr3 198158871 198159048 -19878110 - L1PA7 LINE L1 -354 5800 5615 9144 92 10 11 chr3 198159631 198159979 -19877179 - L1PA7 LINE L1 -36 6118 5771 2505 65 0 7 chr3 198159979 198160286 -19876872 - AluY SINE Alu -6 305 1 9144 92 10 11 chr3 198160286 198161845 -19875313 - L1PA7 LINE L1 -383 5771 4215 319 298 142 7 chr3 198161845 198161986 -19875172 - LTR16A LTR ERVL -288 162 3 859 275 147 19 chr3 198161991 198162126 -19875032 + L2 LINE L2 2136 2252 -1062 1731 147 6 86 chr3 198162126 198162452 -19874706 - AluSx SINE Alu -12 300 1 859 275 147 19 chr3 198162452 198162745 -19874413 + L2 LINE L2 2252 2619 -695 2338 104 3 0 chr3 198163051 198163360 -19873798 - AluSx SINE Alu -2 310 1 319 211 26 13 chr3 198163641 198163654 -19873504 + L1ME2 LINE L1 6078 6089 -75 1322 214 50 10 chr3 198163654 198163953 -19873205 - AluJo SINE Alu -1 311 1 319 211 26 13 chr3 198163953 198164015 -19873143 + L1ME2 LINE L1 6089 6154 -10 912 271 25 39 chr3 198166532 198166816 -19870342 + MLT1I LTR MaLR 130 409 0 1984 152 17 0 chr3 198166889 198167191 -19869967 + AluJb SINE Alu 2 308 -4 25 0 0 0 chr3 198167290 198167315 -19869843 + AT_rich Low_complexity Low_complexity 1 25 0 207 260 178 0 chr3 198167690 198167763 -19869395 + L2 LINE L2 3225 3310 -3 316 342 107 43 chr3 198167793 198168138 -19869020 + L2 LINE L2 2358 2724 -590 428 111 14 0 chr3 198168209 198168281 -19868877 + (GGAA)n Simple_repeat Simple_repeat 4 76 0 280 270 195 81 chr3 198168391 198168750 -19868408 + L2 LINE L2 2914 3313 0 238 369 68 9 chr3 198168741 198168963 -19868195 - L2 LINE L2 -784 2530 2296 * 811 152 0 55 chr3 198168969 198169114 -19868044 - FLAM_C SINE Alu -6 137 1 803 273 194 40 chr3 198169370 198169755 -19867403 + L1MC4a LINE L1 6093 6417 -1391 219 69 0 0 chr3 198169755 198169784 -19867374 + (TA)n Simple_repeat Simple_repeat 1 29 0 803 273 194 40 chr3 198169784 198169980 -19867178 + L1MC4a LINE L1 6417 6764 -1044 333 68 0 0 chr3 198169992 198170036 -19867122 + (CA)n Simple_repeat Simple_repeat 2 45 0 1698 140 7 48 chr3 198170663 198170955 -19866203 - AluJo SINE Alu -30 282 3 263 282 24 0 chr3 198171039 198171124 -19866034 + MER102a DNA MER1_type 241 327 -3 295 263 140 9 chr3 198172079 198172193 -19864965 + L2 LINE L2 3164 3292 -21 861 212 71 28 chr3 198172328 198172540 -19864618 + MIR SINE MIR 2 222 -40 645 207 59 41 chr3 198172674 198172843 -19864315 + MER3 DNA MER1_type 2 126 -83 237 178 0 0 chr3 198173606 198173651 -19863507 + (TG)n Simple_repeat Simple_repeat 1 45 0 1793 160 31 3 chr3 198174017 198174311 -19862847 - AluJb SINE Alu -10 302 1 320 200 31 0 chr3 198174331 198174396 -19862762 - HAL1 LINE L1 0 2507 2441 23 68 0 0 chr3 198174648 198174692 -19862466 + AT_rich Low_complexity Low_complexity 1 44 0 183 307 67 102 chr3 198174798 198175202 -19861956 - L2 LINE L2 0 3272 2883 1919 191 28 21 chr3 198175315 198175702 -19861456 + MLT1B LTR MaLR 1 390 0 638 197 8 0 chr3 198176010 198176132 -19861026 - MIR SINE MIR -17 245 123 1939 118 39 8 chr3 198176132 198176520 -19860638 - LTR7 LTR ERV1 0 450 1 3040 97 4 29 chr3 198176520 198176976 -19860182 - HERVH LTR ERV1 0 7713 7269 * 6649 115 15 1 chr3 198176958 198177896 -19859262 - HERVH LTR ERV1 -2693 5020 4070 3039 78 92 2 chr3 198177896 198178307 -19858851 + LTR7 LTR ERV1 1 448 -2 14480 113 16 27 chr3 198178310 198181095 -19856063 + HERVH LTR ERV1 1 2992 -4721 932 141 7 0 chr3 198181082 198181231 -19855927 + HERVH LTR ERV1 3141 3290 -4423 * 3433 115 0 6 chr3 198181221 198181726 -19855432 + HERVH LTR ERV1 3492 3993 -3720 2836 118 57 2 chr3 198181728 198182311 -19854847 + HERVH LTR ERV1 4488 5149 -2564 2418 103 37 42 chr3 198182312 198182908 -19854250 + HERVH LTR ERV1 5600 7713 0 2788 87 119 5 chr3 198182908 198183310 -19853848 + LTR7 LTR ERV1 1 448 -2 1369 137 19 8 chr3 198183310 198183644 -19853514 - HERVH LTR ERV1 -3552 4261 3806 * 2688 164 7 0 chr3 198183638 198184083 -19853075 - HERVH LTR ERV1 -4126 3587 3140 * 10750 131 2 18 chr3 198184053 198186302 -19850856 - HERVH LTR ERV1 -4709 3004 800 1143 201 24 21 chr3 198186360 198186786 -19850372 - HERVH LTR ERV1 -7254 459 1 2139 90 33 8 chr3 198186786 198187176 -19849982 - LTR7 LTR ERV1 0 450 1 258 286 16 0 chr3 198187182 198187245 -19849913 - MIR SINE MIR -142 120 57 424 278 22 50 chr3 198188274 198188454 -19848704 - MIR SINE MIR 0 262 88 556 172 134 100 chr3 198188476 198188601 -19848557 - LTR37B LTR ERV1 0 468 349 423 56 0 0 chr3 198188601 198188655 -19848503 + (TG)n Simple_repeat Simple_repeat 2 55 0 556 172 134 100 chr3 198188655 198188757 -19848401 - LTR37B LTR ERV1 -119 349 228 2449 90 0 0 chr3 198188757 198189068 -19848090 + AluY SINE Alu 1 311 0 556 172 134 100 chr3 198189068 198189100 -19848058 - LTR37B LTR ERV1 -240 228 199 1809 177 99 6 chr3 198189264 198189598 -19847560 + MLT1A1 LTR MaLR 1 365 0 844 210 118 0 chr3 198189608 198189794 -19847364 + MER3 DNA MER1_type 1 208 -1 371 329 184 0 chr3 198190095 198190247 -19846911 - MER102a DNA MER1_type -148 182 3 2459 86 3 0 chr3 198190271 198190574 -19846584 + AluSp SINE Alu 1 304 -9 465 179 10 6 chr3 198190683 198190767 -19846391 + MLT1A1 LTR MaLR 283 359 -6 188 381 135 0 chr3 198190790 198190916 -19846242 + L2 LINE L2 3168 3310 -3 643 208 25 0 chr3 198190939 198191059 -19846099 + FLAM_C SINE Alu 3 125 -8 1557 173 64 14 chr3 198191096 198191379 -19845779 + AluJo SINE Alu 1 297 -15 21 0 0 0 chr3 198191474 198191495 -19845663 + AT_rich Low_complexity Low_complexity 1 21 0 634 168 0 0 chr3 198191504 198191599 -19845559 - FLAM_A SINE Alu -30 112 18 1660 171 30 33 chr3 198191735 198192039 -19845119 - AluJo SINE Alu -9 303 1 366 241 31 83 chr3 198192931 198193061 -19844097 - L1MC4 LINE L1 -1 8041 7927 198 71 0 0 chr3 198193061 198193089 -19844069 + (TCCA)n Simple_repeat Simple_repeat 4 31 0 366 241 31 83 chr3 198193089 198193186 -19843972 - L1MC4 LINE L1 -115 7927 7826 306 100 60 0 chr3 198193248 198193298 -19843860 - L1ME2 LINE L1 -27 6137 6085 2307 144 78 2 chr3 198193385 198193780 -19843378 - L1MC1 LINE L1 0 6333 5909 498 122 14 0 chr3 198193783 198193857 -19843301 - L1MC1 LINE L1 -349 5984 5910 525 192 43 47 chr3 198193863 198194032 -19843126 + ALR/Alpha Satellite centromeric 1 168 -33 4007 129 14 23 chr3 198194042 198194779 -19842379 - L1MC1 LINE L1 -436 5897 5169 394 254 8 46 chr3 198194837 198194967 -19842191 - L2 LINE L2 -86 3227 3103 926 235 146 56 chr3 198194985 198195431 -19841727 - L2 LINE L2 -613 2701 2216 428 276 175 21 chr3 198195434 198195720 -19841438 + LTR33 LTR ERVL 1 330 -191 594 258 81 30 chr3 198195727 198195925 -19841233 - L2 LINE L2 -1113 2201 1994 2087 115 14 0 chr3 198195937 198196233 -19840925 + AluSx SINE Alu 1 300 -12 2447 71 7 0 chr3 198196516 198196813 -19840345 - AluSx SINE Alu -13 299 1 27 29 0 0 chr3 198197452 198197486 -19839672 + AT_rich Low_complexity Low_complexity 1 34 0 596 200 28 44 chr3 198197714 198197894 -19839264 - MLT1K LTR MaLR 0 588 412 1095 40 0 0 chr3 198198261 198198421 -19838737 + L1PA3 LINE L1 6008 6167 0 778 212 12 98 chr3 198199127 198199196 -19837962 + MLT1C LTR MaLR 1 74 -316 2189 159 86 13 chr3 198199196 198199591 -19837567 - MSTA LTR MaLR -4 424 1 778 212 12 98 chr3 198199591 198199776 -19837382 + MLT1C LTR MaLR 74 233 -157 968 206 63 34 chr3 198199800 198200038 -19837120 + MLT1C LTR MaLR 223 467 0 1521 162 62 52 chr3 198200619 198200927 -19836231 + AluJo SINE Alu 1 311 -1 2050 92 42 7 chr3 198201523 198201807 -19835351 + AluSp SINE Alu 1 294 -19 2610 138 30 41 chr3 198202376 198202811 -19834347 - MSTB1 LTR MaLR 0 432 3 1797 186 7 0 chr3 198202992 198203288 -19833870 + AluJo SINE Alu 1 298 -14 612 208 41 15 chr3 198203288 198203591 -19833567 + GA-rich Low_complexity Low_complexity 1 310 0 1833 169 80 40 chr3 198203591 198203964 -19833194 - MSTB LTR MaLR -35 391 4 2366 93 14 37 chr3 198204024 198204228 -19832930 - L1MA4 LINE L1 -272 6028 5834 2410 87 3 3 chr3 198204228 198204527 -19832631 - AluSp SINE Alu -14 299 1 2366 93 14 37 chr3 198204527 198204677 -19832481 - L1MA4 LINE L1 -466 5834 5682 1042 171 22 149 chr3 198204678 198204771 -19832387 - MER82 DNA MER2_type -378 275 172 2658 111 52 38 chr3 198204771 198204865 -19832293 + MSTC LTR MaLR 1 92 -336 1773 174 17 0 chr3 198204865 198205158 -19832000 + AluJo SINE Alu 1 298 -14 2658 111 52 38 chr3 198205158 198205418 -19831740 + MSTC LTR MaLR 92 364 -64 2281 101 3 0 chr3 198205418 198205715 -19831443 + AluSx SINE Alu 3 300 -12 2658 111 52 38 chr3 198205715 198205781 -19831377 + MSTC LTR MaLR 364 428 0 1042 171 22 149 chr3 198205781 198206002 -19831156 - MER82 DNA MER2_type -481 172 1 1514 113 27 5 chr3 198206787 198207008 -19830150 + L1 LINE L1 13 238 -7327 * 19479 124 15 11 chr3 198207005 198208489 -19828669 + L1 LINE L1 809 2286 -5279 1856 139 41 30 chr3 198208489 198208784 -19828374 + AluJb SINE Alu 3 300 -12 19479 124 15 11 chr3 198208784 198210504 -19826654 + L1 LINE L1 2286 4028 -3537 4694 147 15 21 chr3 198210498 198210987 -19826171 + L1 LINE L1 5563 6046 -1519 * 2379 93 3 3 chr3 198210987 198211300 -19825858 + AluSp SINE Alu 1 313 0 4694 147 15 21 chr3 198211300 198211668 -19825490 + L1 LINE L1 6046 6415 -1150 562 152 0 54 chr3 198211772 198212042 -19825116 + AluJo SINE Alu 1 311 -1 311 373 37 15 chr3 198212755 198212889 -19824269 + MIR3 SINE MIR 20 156 -52 238 309 65 24 chr3 198212899 198213022 -19824136 - MER117 DNA MER1_type -6 191 64 1770 219 144 7 chr3 198213092 198213521 -19823637 - MLT1G1 LTR MaLR -6 589 102 1084 149 104 10 chr3 198213521 198213722 -19823436 - AluSg/x SINE Alu -8 304 85 266 246 16 0 chr3 198213734 198213795 -19823363 - MLT1G1 LTR MaLR -533 62 1 1065 223 135 56 chr3 198213985 198214340 -19822818 - L1ME1 LINE L1 -25 6141 5759 2417 90 0 0 chr3 198215315 198215616 -19821542 - AluSg SINE Alu -9 301 1 1395 178 96 10 chr3 198215940 198216254 -19820904 + MER2 DNA MER2_type 4 344 -1 390 271 56 26 chr3 198216409 198216588 -19820570 - MIR SINE MIR -51 211 30 2192 107 3 10 chr3 198216814 198217112 -19820046 + AluSx SINE Alu 1 296 -16 236 292 15 7 chr3 198217169 198217306 -19819852 + (TA)n Simple_repeat Simple_repeat 1 138 0 2296 97 0 16 chr3 198217422 198217732 -19819426 - AluSx SINE Alu -7 305 1 189 0 0 0 chr3 198218355 198218376 -19818782 + (T)n Simple_repeat Simple_repeat 1 21 0 282 306 76 25 chr3 198218462 198218619 -19818539 - L2 LINE L2 -1171 2143 1979 1177 256 39 65 chr3 198218854 198219346 -19817812 - L1MEc LINE L1 -5678 718 240 1926 116 14 11 chr3 198219430 198219715 -19817443 - AluSx SINE Alu -26 286 1 554 194 21 35 chr3 198219729 198219873 -19817285 - L1MEc LINE L1 -6217 179 38 2092 133 3 7 chr3 198219979 198220279 -19816879 + AluSx SINE Alu 1 299 -13 1116 162 81 21 chr3 198220634 198220813 -19816345 - Tigger2 DNA MER2_type -2470 248 50 2032 148 0 16 chr3 198220813 198221130 -19816028 + AluSx SINE Alu 1 312 0 1116 162 81 21 chr3 198221130 198221184 -19815974 - Tigger2 DNA MER2_type -2668 50 1 246 62 0 0 chr3 198221757 198221789 -19815369 + (A)n Simple_repeat Simple_repeat 1 32 0 2556 71 0 0 chr3 198221829 198222139 -19815019 + AluY SINE Alu 1 310 -1 1223 270 78 42 chr3 198222701 198223275 -19813883 + L1MC4a LINE L1 5473 6067 -1741 24 0 0 0 chr3 198223324 198223348 -19813810 + AT_rich Low_complexity Low_complexity 1 24 0 1791 165 3 16 chr3 198223393 198223696 -19813462 - AluJb SINE Alu -13 299 1 2650 30 0 0 chr3 198223704 198224003 -19813155 - AluY SINE Alu -12 299 1 208 203 63 0 chr3 198224173 198224252 -19812906 + (TA)n Simple_repeat Simple_repeat 1 84 0 245 242 105 32 chr3 198224321 198224416 -19812742 + MIR SINE MIR 20 121 -141 2068 113 0 0 chr3 198226036 198226310 -19810848 + AluSx SINE Alu 39 312 0 235 292 56 11 chr3 198226437 198226526 -19810632 - L2 LINE L2 -659 2655 2563 2052 89 50 0 chr3 198226626 198226906 -19810252 - AluSg SINE Alu -16 294 1 21 0 0 0 chr3 198226908 198226929 -19810229 + AT_rich Low_complexity Low_complexity 1 21 0 210 214 0 67 chr3 198227802 198227891 -19809267 + C-rich Low_complexity Low_complexity 1 83 0 248 295 122 22 chr3 198228504 198228643 -19808515 + MIR SINE MIR 47 199 -63 477 241 9 0 chr3 198228649 198228756 -19808402 + MER5A DNA MER1_type 4 110 -79 270 203 29 29 chr3 198229434 198229503 -19807655 + HsTC2 DNA Tc2 1 69 -1829 588 155 0 0 chr3 198229529 198229613 -19807545 - AluJ/FLAM SINE Alu -226 86 3 371 267 42 0 chr3 198229613 198229733 -19807425 + MER104 DNA Tc2 56 180 0 1468 121 167 12 chr3 198229781 198230038 -19807120 + AluSg1 SINE Alu 1 297 -12 301 113 72 10 chr3 198230039 198230136 -19807022 + (TA)n Simple_repeat Simple_repeat 1 103 0 229 289 62 96 chr3 198230603 198230990 -19806168 - L2 LINE L2 -826 2488 2115 1513 140 45 45 chr3 198231077 198231284 -19805874 - MLT1B LTR MaLR 0 390 181 1904 126 0 7 chr3 198231284 198231598 -19805560 - AluSc SINE Alu 0 309 7 1513 140 45 45 chr3 198231598 198231676 -19805482 - MLT1B LTR MaLR -208 182 105 243 277 0 0 chr3 198231776 198231841 -19805317 + A-rich Low_complexity Low_complexity 1 65 0 1283 157 0 0 chr3 198232051 198232255 -19804903 + AluSq SINE Alu 108 311 -2 675 146 0 0 chr3 198232258 198232354 -19804804 - MLT1B LTR MaLR -294 96 1 231 269 0 0 chr3 198232354 198232397 -19804761 + Charlie4 DNA MER1_type 1919 1961 0 2321 96 0 10 chr3 198232752 198233054 -19804104 + AluSg SINE Alu 1 299 -11 28 61 0 0 chr3 198233111 198233160 -19803998 + AT_rich Low_complexity Low_complexity 1 49 0 198 167 0 0 chr3 198233405 198233441 -19803717 + (TG)n Simple_repeat Simple_repeat 2 37 0 365 288 71 16 chr3 198233441 198233635 -19803523 - L1ME3 LINE L1 -252 5912 5706 357 182 105 70 chr3 198233657 198233800 -19803358 - MIR SINE MIR -23 239 92 234 162 0 0 chr3 198233937 198233974 -19803184 - MER94 DNA DNA -97 37 1 637 322 64 49 chr3 198233977 198234306 -19802852 + LTR33 LTR ERVL 163 496 -25 1170 143 129 5 chr3 198234420 198234630 -19802528 + AluJo SINE Alu 1 236 -76 450 336 53 75 chr3 198235237 198235648 -19801510 - L2 LINE L2 -54 3218 2817 241 315 132 36 chr3 198235752 198235971 -19801187 - L2 LINE L2 -697 2617 2378 194 331 73 16 chr3 198236253 198236377 -19800781 - L2 LINE L2 -825 2489 2359 1908 142 13 26 chr3 198236387 198236697 -19800461 + AluSx SINE Alu 1 306 -6 2347 204 73 41 chr3 198236703 198237238 -19799920 - MER68 LTR ERV1 -2 560 9 2267 100 3 0 chr3 198237776 198238075 -19799083 + AluSx SINE Alu 1 300 -12 188 262 66 16 chr3 198238075 198238136 -19799022 - L2 LINE L2 -1409 1905 1842 22 0 0 0 chr3 198238235 198238257 -19798901 + AT_rich Low_complexity Low_complexity 1 22 0 189 107 0 0 chr3 198238760 198238788 -19798370 + (T)n Simple_repeat Simple_repeat 1 28 0 902 156 0 0 chr3 198240254 198240395 -19796763 - FLAM_C SINE Alu -2 141 1 251 267 50 0 chr3 198240795 198240855 -19796303 + L2 LINE L2 3210 3272 0 556 291 46 20 chr3 198241073 198241269 -19795889 - L1M4b LINE L1 -6646 213 13 3374 142 24 13 chr3 198242749 198243290 -19793868 - L1PA13 LINE L1 -11 6152 5606 989 142 54 59 chr3 198243290 198243494 -19793664 + AluJb SINE Alu 1 203 -109 268 108 0 0 chr3 198243495 198243532 -19793626 + AluSq/x SINE Alu 70 106 -197 238 292 117 47 chr3 198243634 198243691 -19793467 - MIR SINE MIR -5 257 205 2118 111 4 0 chr3 198243691 198244003 -19793155 - AluSc SINE Alu 0 313 1 238 292 117 47 chr3 198244003 198244115 -19793043 - MIR SINE MIR -57 205 75 2052 113 7 13 chr3 198244138 198244439 -19792719 - AluSx SINE Alu -13 299 1 419 280 70 6 chr3 198244658 198244815 -19792343 - L1ME LINE L1 -436 5685 5519 2160 90 35 3 chr3 198244851 198245162 -19791996 - AluSx SINE Alu 0 312 1 2230 113 3 0 chr3 198245428 198245721 -19791437 - AluSx SINE Alu -18 294 1 763 187 67 104 chr3 198246574 198246790 -19790368 - MER58B DNA MER1_type -2083 337 133 1818 164 30 3 chr3 198246790 198247094 -19790064 - AluJo SINE Alu 0 312 1 763 187 67 104 chr3 198247094 198247176 -19789982 - MER58B DNA MER1_type -2287 133 50 2066 115 7 0 chr3 198247935 198248263 -19788895 - AluSg1 SINE Alu 0 330 1 1825 85 8 20 chr3 198248957 198249204 -19787954 + AluSq SINE Alu 1 244 -69 852 310 115 51 chr3 198249482 198249632 -19787526 + ERVL LTR ERVL 1728 1867 -3897 785 141 163 7 chr3 198249632 198249767 -19787391 + FAM SINE Alu 1 156 -19 852 310 115 51 chr3 198249767 198250267 -19786891 + ERVL LTR ERVL 1867 2420 -3344 374 299 5 24 chr3 198250504 198250536 -19786622 + ERVL LTR ERVL 2930 2961 -2732 2128 136 0 0 chr3 198250536 198250844 -19786314 + AluSx SINE Alu 1 308 -4 374 299 5 24 chr3 198250844 198250941 -19786217 + ERVL LTR ERVL 2961 3091 -2602 911 142 14 115 chr3 198251422 198251640 -19785518 + L1MB3 LINE L1 5947 6142 -41 285 135 0 19 chr3 198251646 198251698 -19785460 + L1MB4 LINE L1 6091 6141 -39 2369 72 0 13 chr3 198251698 198252003 -19785155 - AluSx SINE Alu -11 301 1 653 197 142 96 chr3 198252014 198252232 -19784926 + MIR SINE MIR 18 245 -17 551 233 213 7 chr3 198252239 198252389 -19784769 - MER5A DNA MER1_type -7 182 2 708 253 77 65 chr3 198252945 198253281 -19783877 + LTR16C LTR ERVL 152 491 0 2233 97 13 0 chr3 198253510 198253810 -19783348 + AluSp SINE Alu 1 304 -9 1384 149 66 66 chr3 198253816 198253977 -19783181 + AluJo SINE Alu 3 166 -146 2585 169 42 86 chr3 198253977 198254617 -19782541 - LTR9 LTR ERV1 0 612 1 1384 149 66 66 chr3 198254617 198254744 -19782414 + AluJo SINE Alu 165 291 -21 2194 108 0 23 chr3 198254749 198255056 -19782102 + AluSg SINE Alu 1 300 -10 938 234 36 63 chr3 198255056 198255305 -19781853 + L1MC4 LINE L1 7566 7803 -239 2354 97 0 0 chr3 198255305 198255605 -19781553 + AluSq SINE Alu 1 300 -13 938 234 36 63 chr3 198255605 198255718 -19781440 + L1MC4 LINE L1 7803 7918 -124 216 202 12 71 chr3 198255731 198255782 -19781376 + (CATATA)n Simple_repeat Simple_repeat 4 50 -32 2537 130 26 16 chr3 198255782 198256167 -19780991 + MLT1B LTR MaLR 1 389 -1 216 202 12 71 chr3 198256167 198256199 -19780959 + (CATATA)n Simple_repeat Simple_repeat 50 82 0 204 40 0 0 chr3 198256201 198256226 -19780932 + (CA)n Simple_repeat Simple_repeat 1 25 0 338 208 50 50 chr3 198256240 198256341 -19780817 + L1MC4 LINE L1 7928 8028 -14 652 231 101 25 chr3 198256450 198256649 -19780509 + AluJo SINE Alu 76 289 -23 2343 96 3 0 chr3 198256651 198256942 -19780216 - AluSx SINE Alu -20 292 1 2311 81 3 0 chr3 198257114 198257411 -19779747 - AluY SINE Alu -13 298 1 301 214 100 107 chr3 198257411 198257551 -19779607 + HAL1b LINE L1 279 417 -931 228 258 11 86 chr3 198257570 198257663 -19779495 + HAL1b LINE L1 1155 1240 -108 993 179 6 28 chr3 198257670 198257849 -19779309 - FAM SINE Alu 0 175 1 2206 117 3 0 chr3 198257940 198258247 -19778911 - AluSg SINE Alu -2 308 1 329 233 23 12 chr3 198258468 198258554 -19778604 - MLT1I LTR MaLR -4 405 319 2331 149 24 83 chr3 198258792 198259033 -19778125 + MSTA LTR MaLR 1 204 -224 2332 97 3 3 chr3 198259033 198259342 -19777816 - AluSq SINE Alu -4 309 1 2331 149 24 83 chr3 198259342 198259555 -19777603 + MSTA LTR MaLR 204 428 0 2028 113 0 98 chr3 198259749 198259946 -19777212 - AluSx SINE Alu 0 302 150 2258 91 0 3 chr3 198259946 198260231 -19776927 - AluSx SINE Alu -28 284 1 2028 113 0 98 chr3 198260231 198260368 -19776790 - AluSx SINE Alu -152 150 1 930 143 6 42 chr3 198260608 198260776 -19776382 - L1MB4 LINE L1 -353 5827 5666 569 169 123 8 chr3 198261056 198261186 -19775972 - Charlie1 DNA MER1_type 0 2761 2617 701 246 75 5 chr3 198261195 198261382 -19775776 - Charlie1 DNA MER1_type -2557 204 5 712 229 68 21 chr3 198261639 198261831 -19775327 - HAL1 LINE L1 -1740 767 567 273 224 32 72 chr3 198262180 198262305 -19774853 + LTR33A LTR ERVL 404 523 0 1132 300 135 2 chr3 198262308 198262798 -19774360 - HAL1 LINE L1 -1952 555 1 286 327 113 40 chr3 198262973 198263118 -19774040 + L2 LINE L2 2344 2477 -837 3089 133 21 6 chr3 198263118 198263601 -19773557 - L1MB3 LINE L1 -1 6182 5693 286 327 113 40 chr3 198263601 198263834 -19773324 + L2 LINE L2 2477 2750 -564 334 368 64 18 chr3 198263873 198264153 -19773005 + L2 LINE L2 2824 3116 -156 821 160 160 11 chr3 198265499 198265680 -19771478 - MER3 DNA MER1_type 0 209 2 786 188 188 6 chr3 198265875 198266045 -19771113 + MER6B DNA MER2_type 9 209 -1 197 192 39 19 chr3 198266539 198266591 -19770567 + MER5A DNA MER1_type 114 166 -23 543 193 96 66 chr3 198266978 198267036 -19770122 - MER5B DNA MER1_type -1 177 122 935 183 59 0 chr3 198267036 198267189 -19769969 + FAM SINE Alu 1 162 -13 543 193 96 66 chr3 198267189 198267296 -19769862 - MER5B DNA MER1_type -56 122 7 622 163 117 7 chr3 198268122 198268268 -19768890 - MLT1C LTR MaLR 0 467 324 1692 96 82 53 chr3 198268468 198268750 -19768408 + AluSg SINE Alu 1 290 -20 2275 123 79 15 chr3 198268816 198269158 -19768000 - THE1B LTR MaLR 0 364 1 735 296 179 7 chr3 198269406 198269825 -19767333 - L1MC4a LINE L1 -1904 5904 5414 335 326 114 64 chr3 198270973 198271378 -19765780 + L1M2 LINE L1 948 1372 -5477 2020 117 0 19 chr3 198272078 198272385 -19764773 + AluSx SINE Alu 1 301 -11 191 167 0 24 chr3 198273459 198273501 -19763657 - L2 LINE L2 -1 3312 3272 188 35 35 0 chr3 198273701 198273730 -19763428 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2039 116 7 0 chr3 198273731 198274006 -19763152 - AluSp SINE Alu -36 277 1 202 206 95 48 chr3 198274639 198274702 -19762456 + L2 LINE L2 3246 3311 -2 259 344 139 28 chr3 198274880 198275060 -19762098 + L2 LINE L2 3073 3272 0 624 182 224 18 chr3 198275189 198275359 -19761799 + MIR SINE MIR 36 240 -22 256 231 26 13 chr3 198275374 198275389 -19761769 + GA-rich Low_complexity Low_complexity 3 16 -65 938 137 6 74 chr3 198275389 198275564 -19761594 + FRAM SINE Alu 1 163 -3 256 231 26 13 chr3 198275564 198275626 -19761532 + GA-rich Low_complexity Low_complexity 16 81 0 2356 100 0 10 chr3 198275634 198275944 -19761214 + AluSc SINE Alu 1 307 -2 1464 81 0 5 chr3 198276222 198276407 -19760751 - AluSg SINE Alu -126 184 1 740 156 7 64 chr3 198277161 198277302 -19759856 + FLAM_C SINE Alu 1 133 0 278 163 0 41 chr3 198277981 198278079 -19759079 + (TA)n Simple_repeat Simple_repeat 1 94 0 1499 152 78 7 chr3 198278416 198278686 -19758472 + AluJo SINE Alu 6 294 -18 395 289 117 20 chr3 198280641 198280838 -19756320 + MARNA DNA Mariner 274 489 -97 2346 84 7 0 chr3 198280880 198281177 -19755981 + AluSc SINE Alu 1 299 -10 252 202 11 135 chr3 198282612 198282647 -19754511 + L1ME4a LINE L1 5975 6013 -108 2119 148 0 0 chr3 198282647 198282952 -19754206 - AluSx SINE Alu -7 305 1 252 202 11 135 chr3 198282952 198283005 -19754153 + L1ME4a LINE L1 6013 6052 -69 2434 79 0 0 chr3 198283010 198283313 -19753845 - AluY SINE Alu -8 303 1 2191 108 0 3 chr3 198285315 198285603 -19751555 - AluSx SINE Alu -25 287 1 2131 123 0 10 chr3 198285866 198286168 -19750990 - AluJb SINE Alu -13 299 1 619 180 0 0 chr3 198287365 198287465 -19749693 - AluJb SINE Alu -11 301 202 1703 183 145 29 chr3 198287465 198287907 -19749251 + L1MC4 LINE L1 7550 8042 0 2234 110 7 3 chr3 198288241 198288542 -19748616 + AluSq SINE Alu 1 302 -11 572 117 11 11 chr3 198288555 198288649 -19748509 + L1MB2 LINE L1 6072 6165 -6 745 154 73 0 chr3 198288709 198288832 -19748326 + L1ME LINE L1 5543 5674 -492 1643 153 4 15 chr3 198288856 198289104 -19748054 + AluSx SINE Alu 38 284 -28 270 73 0 0 chr3 198289104 198289145 -19748013 + (CA)n Simple_repeat Simple_repeat 2 42 0 1643 153 4 15 chr3 198289145 198289164 -19747994 + AluSx SINE Alu 284 302 -10 471 229 48 0 chr3 198289177 198289282 -19747876 + L1MB8 LINE L1 5999 6108 -70 1669 180 3 33 chr3 198289591 198289896 -19747262 + AluJo SINE Alu 1 296 -16 599 299 94 21 chr3 198290087 198290321 -19746837 - MIR SINE MIR -4 258 8 2273 99 16 0 chr3 198290558 198290861 -19746297 + AluSx SINE Alu 1 308 -4 2166 132 0 3 chr3 198291073 198291377 -19745781 + AluSx SINE Alu 1 303 -9 682 214 120 69 chr3 198291378 198291653 -19745505 - MER102b DNA MER1_type -15 326 38 1780 164 17 0 chr3 198291844 198292137 -19745021 + AluJb SINE Alu 1 298 -14 323 227 87 92 chr3 198292534 198292719 -19744439 + MIR SINE MIR 71 254 -8 1963 129 7 7 chr3 198292781 198293075 -19744083 + AluSp SINE Alu 6 299 -14 21 57 0 0 chr3 198293076 198293111 -19744047 + AT_rich Low_complexity Low_complexity 1 35 0 1038 113 0 0 chr3 198293653 198293786 -19743372 - FLAM_C SINE Alu 0 133 1 532 246 82 10 chr3 198294018 198294225 -19742933 + L1MC4 LINE L1 7455 7676 -366 267 133 89 0 chr3 198295523 198295568 -19741590 - ORSL DNA AcHobo 0 275 227 * 322 22 0 43 chr3 198295557 198295603 -19741555 - PABL_A LTR ERV1 -38 622 579 880 67 0 0 chr3 198295605 198295742 -19741416 - AluSg/x SINE Alu 0 314 178 715 135 150 63 chr3 198295742 198295949 -19741209 - ORSL DNA AcHobo -47 228 4 2271 104 7 0 chr3 198295949 198296247 -19740911 - AluSx SINE Alu -12 300 1 219 337 45 0 chr3 198296330 198296419 -19740739 - MIR SINE MIR -50 212 120 318 183 21 118 chr3 198296445 198296491 -19740667 - MIR SINE MIR 0 262 228 2183 116 0 3 chr3 198296491 198296793 -19740365 - AluSg SINE Alu -9 301 1 318 183 21 118 chr3 198296793 198296839 -19740319 - MIR SINE MIR -34 228 179 208 250 15 29 chr3 198297436 198297504 -19739654 + L2 LINE L2 3169 3235 -78 343 227 84 113 chr3 198297507 198297710 -19739448 + MIR SINE MIR 32 228 -34 2282 135 94 17 chr3 198297727 198298141 -19739017 - L1MB3 LINE L1 -7 6176 5731 207 0 0 0 chr3 198298144 198298167 -19738991 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 573 149 0 11 chr3 198298169 198298256 -19738902 - AluSg/x SINE Alu -25 285 200 3514 81 8 25 chr3 198298260 198298334 -19738824 - PABL_A LTR ERV1 -9 651 577 2121 95 0 11 chr3 198298334 198298648 -19738510 - AluSx SINE Alu 0 311 1 3514 81 8 25 chr3 198298648 198299043 -19738115 - PABL_A LTR ERV1 -83 577 189 533 190 0 0 chr3 198299043 198299122 -19738036 - AluS SINE Alu -229 84 6 520 206 11 0 chr3 198299207 198299299 -19737859 - MER6B DNA MER2_type -179 97 5 2222 162 13 34 chr3 198299300 198299408 -19737750 - L1MB3 LINE L1 -450 5721 5612 2317 143 19 34 chr3 198299408 198299787 -19737371 - MER83C LTR ERV1 0 373 1 2222 162 13 34 chr3 198299787 198300107 -19737051 - L1MB3 LINE L1 -559 5612 5287 654 168 24 48 chr3 198300107 198300232 -19736926 - FLAM_A SINE Alu -11 122 1 2222 162 13 34 chr3 198300232 198300243 -19736915 - L1MB3 LINE L1 -884 5287 5277 186 43 0 0 chr3 198300243 198300266 -19736892 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1895 143 7 7 chr3 198300268 198300548 -19736610 - AluJo SINE Alu -32 280 1 2222 162 13 34 chr3 198300548 198300769 -19736389 - L1MB3 LINE L1 -895 5276 5100 22 0 0 0 chr3 198300888 198300910 -19736248 + AT_rich Low_complexity Low_complexity 1 22 0 2013 102 49 7 chr3 198301569 198301854 -19735304 - AluSx SINE Alu -13 299 3 2355 57 17 13 chr3 198302105 198302405 -19734753 - AluY SINE Alu -10 301 1 318 122 0 0 chr3 198302412 198302461 -19734697 + MADE1 DNA Mariner 32 80 0 221 265 114 30 chr3 198302480 198302612 -19734546 - L3 LINE CR1 -467 1110 968 264 303 133 43 chr3 198302753 198302964 -19734194 - L3 LINE CR1 -865 712 483 288 306 74 0 chr3 198303172 198303280 -19733878 - L3 LINE CR1 -1061 516 401 677 154 0 0 chr3 198304404 198304508 -19732650 - U13 snRNA snRNA 0 104 1 22 56 0 0 chr3 198304769 198304805 -19732353 + AT_rich Low_complexity Low_complexity 1 36 0 2198 84 0 24 chr3 198305890 198306186 -19730972 + AluSg SINE Alu 1 289 -21 2043 142 0 0 chr3 198306617 198306919 -19730239 - AluSx SINE Alu -10 302 1 715 281 149 4 chr3 198307128 198307356 -19729802 - MIR SINE MIR 0 262 2 511 246 176 7 chr3 198307603 198307745 -19729413 + MIR SINE MIR 2 167 -95 345 162 0 5 chr3 198308111 198308176 -19728982 + Alu SINE Alu 3 47 -256 2071 109 0 11 chr3 198308286 198308570 -19728588 - AluSg SINE Alu -29 281 1 451 171 11 0 chr3 198308570 198308658 -19728500 - L1 LINE L1 -818 5328 5240 2468 165 19 9 chr3 198308659 198308933 -19728225 - MSTA LTR MaLR 0 428 147 3654 98 14 4 chr3 198308933 198309421 -19727737 + LTR15 LTR ERV1 1 493 0 2468 165 19 9 chr3 198309421 198309570 -19727588 - MSTA LTR MaLR -281 147 1 2026 155 3 6 chr3 198309571 198309919 -19727239 - L1 LINE L1 -904 5242 4896 1515 166 10 14 chr3 198309922 198310211 -19726947 - L1 LINE L1 -1467 4679 4392 2041 129 7 10 chr3 198310644 198310946 -19726212 + AluSx SINE Alu 12 312 0 682 314 275 32 chr3 198311288 198311490 -19725668 - L2 LINE L2 -466 2848 2696 765 223 65 39 chr3 198311490 198311719 -19725439 + MER106A DNA MER1_type 2 236 0 682 314 275 32 chr3 198311719 198313033 -19724125 - L2 LINE L2 -618 2696 963 2215 122 3 3 chr3 198313318 198313630 -19723528 - AluSx SINE Alu 0 312 1 335 378 52 38 chr3 198313756 198314023 -19723135 + L2 LINE L2 3000 3270 -2 1949 141 34 0 chr3 198314053 198314350 -19722808 - AluSx SINE Alu -5 307 1 910 147 0 0 chr3 198314495 198314631 -19722527 + AluSg/x SINE Alu 161 296 -14 666 279 80 27 chr3 198314944 198314969 -19722189 - L1P3 LINE L1 -377 5795 5773 8026 25 5 3 chr3 198314969 198316452 -19720706 - L1PA4 LINE L1 0 6155 4663 666 279 80 27 chr3 198316452 198316842 -19720316 - L1P3 LINE L1 -399 5773 5352 1719 185 4 0 chr3 198316859 198317140 -19720018 - AluJb SINE Alu -30 282 1 2092 102 48 0 chr3 198317249 198317544 -19719614 - AluSx SINE Alu -3 309 1 21 0 0 0 chr3 198317703 198317724 -19719434 + AT_rich Low_complexity Low_complexity 1 21 0 1709 156 20 24 chr3 198317737 198317910 -19719248 - AluJo SINE Alu -18 294 121 183 42 0 0 chr3 198317910 198317934 -19719224 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1709 156 20 24 chr3 198317934 198318055 -19719103 - AluJo SINE Alu -191 121 1 782 152 23 23 chr3 198318075 198318207 -19718951 - FLAM_A SINE Alu -1 132 1 527 289 0 13 chr3 198318247 198318406 -19718752 - L1MC4a LINE L1 -1911 5897 5741 186 330 156 18 chr3 198318815 198318924 -19718234 - L2 LINE L2 -13 3259 3136 218 265 29 59 chr3 198318948 198319016 -19718142 + L2 LINE L2 3189 3254 -18 2135 124 0 10 chr3 198319154 198319461 -19717697 + AluSg SINE Alu 1 304 -6 22 0 0 0 chr3 198319845 198319867 -19717291 + AT_rich Low_complexity Low_complexity 1 22 0 378 74 0 0 chr3 198320314 198320368 -19716790 + (CA)n Simple_repeat Simple_repeat 2 55 0 1957 114 40 3 chr3 198320550 198320847 -19716311 - AluSx SINE Alu 0 312 5 611 163 159 72 chr3 198321191 198321442 -19715716 - L1MA4 LINE L1 0 6300 6028 1896 146 0 0 chr3 198321544 198321819 -19715339 - AluSx SINE Alu -37 275 1 356 206 110 110 chr3 198322801 198322947 -19714211 + MIR SINE MIR 35 180 -82 24 0 0 0 chr3 198323328 198323352 -19713806 + AT_rich Low_complexity Low_complexity 1 24 0 2206 108 0 3 chr3 198323586 198323881 -19713277 - AluSp SINE Alu -19 294 1 897 131 0 0 chr3 198324108 198324230 -19712928 - FLAM_A SINE Alu -9 124 3 915 223 0 0 chr3 198324478 198324653 -19712505 - AluJb SINE Alu 0 312 138 473 292 71 91 chr3 198325012 198325112 -19712046 + L2 LINE L2 2444 2545 -727 2235 106 6 6 chr3 198325112 198325424 -19711734 + AluSx SINE Alu 1 312 0 473 292 71 91 chr3 198325424 198325534 -19711624 + L2 LINE L2 2545 2656 -616 1213 141 52 0 chr3 198325534 198325726 -19711432 + MER3 DNA MER1_type 5 206 -3 473 292 71 91 chr3 198325726 198326256 -19710902 + L2 LINE L2 2656 3174 -98 255 133 0 44 chr3 198326575 198326589 -19710569 + AluSp SINE Alu 124 135 -168 247 57 29 0 chr3 198326589 198326624 -19710534 + Alu SINE Alu 1 36 -265 1354 100 0 0 chr3 198326625 198326805 -19710353 - AluSg/x SINE Alu -6 306 127 22 0 0 0 chr3 198327122 198327144 -19710014 + AT_rich Low_complexity Low_complexity 1 22 0 2045 128 0 0 chr3 198327178 198327489 -19709669 - AluSx SINE Alu 0 311 1 2803 88 11 16 chr3 198327561 198327938 -19709220 + THE1C LTR MaLR 1 375 0 26 0 0 0 chr3 198328628 198328654 -19708504 + AT_rich Low_complexity Low_complexity 1 26 0 450 265 60 22 chr3 198328789 198328974 -19708184 - L1ME4a LINE L1 -216 5905 5714 1542 106 62 144 chr3 198329630 198329969 -19707189 - AluSx SINE Alu -1 311 1 277 237 129 21 chr3 198330568 198330661 -19706497 - L2 LINE L2 -2 3270 3168 202 300 157 0 chr3 198330661 198330731 -19706427 - L2 LINE L2 -31 3282 3202 2440 75 3 3 chr3 198331142 198331448 -19705710 - AluSp SINE Alu -7 306 1 2230 66 0 15 chr3 198332173 198332445 -19704713 + AluY SINE Alu 29 296 -15 406 300 63 21 chr3 198332675 198332865 -19704293 - MIR SINE MIR -1 261 64 1573 118 82 31 chr3 198333223 198333478 -19703680 - AluJb SINE Alu -18 294 27 644 229 9 65 chr3 198333506 198333720 -19703438 - L1M4 LINE L1 -1778 4368 4167 188 65 0 32 chr3 198333720 198333751 -19703407 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 43 101 0 0 chr3 198333947 198334095 -19703063 + AT_rich Low_complexity Low_complexity 1 148 0 188 35 35 0 chr3 198334205 198334234 -19702924 + (TTA)n Simple_repeat Simple_repeat 2 31 0 218 249 0 0 chr3 198334481 198334536 -19702622 + MIR SINE MIR 57 110 -102 243 0 0 0 chr3 198334539 198334566 -19702592 + (T)n Simple_repeat Simple_repeat 1 27 0 1785 165 7 0 chr3 198334641 198334914 -19702244 + AluJb SINE Alu 5 279 -33 261 0 0 0 chr3 198334918 198334947 -19702211 + (CAA)n Simple_repeat Simple_repeat 2 30 0 183 80 0 0 chr3 198334949 198334974 -19702184 + (GA)n Simple_repeat Simple_repeat 2 26 0 1082 187 61 35 chr3 198335054 198335284 -19701874 - MER46A DNA MER2_type 0 236 1 2246 97 14 0 chr3 198335295 198335584 -19701574 - AluSg SINE Alu -16 294 2 2441 157 108 40 chr3 198335967 198336495 -19700663 - LTR6A LTR ERV1 0 564 1 728 265 58 84 chr3 198337254 198338133 -19699025 - L1ME2 LINE L1 -208 5956 5055 2356 144 8 19 chr3 198338133 198338501 -19698657 - THE1B LTR MaLR 0 364 1 728 265 58 84 chr3 198338501 198338699 -19698459 - L1ME2 LINE L1 -1109 5055 4853 2402 86 0 0 chr3 198338699 198339002 -19698156 - AluSc SINE Alu -5 304 2 728 265 58 84 chr3 198339002 198339015 -19698143 - L1ME2 LINE L1 -1311 4853 4841 387 0 0 0 chr3 198339015 198339058 -19698100 + (CA)n Simple_repeat Simple_repeat 2 44 0 1771 162 0 39 chr3 198339058 198339367 -19697791 - AluJb SINE Alu -15 297 1 728 265 58 84 chr3 198339367 198339692 -19697466 - L1ME2 LINE L1 -1321 4843 4570 613 157 19 9 chr3 198339711 198339819 -19697339 + L2 LINE L2 3197 3305 -8 307 312 65 35 chr3 198339897 198340096 -19697062 - L1ME2 LINE L1 -1709 4437 4233 266 177 97 0 chr3 198340394 198340456 -19696702 - MIR SINE MIR -78 130 63 1575 165 18 18 chr3 198341053 198341338 -19695820 + AluJo SINE Alu 10 294 -18 2479 91 3 0 chr3 198342123 198342431 -19694727 + AluSp SINE Alu 1 309 -4 1170 68 0 0 chr3 198342824 198342985 -19694173 + (TCCA)n Simple_repeat Simple_repeat 1 161 0 202 163 23 23 chr3 198342985 198343028 -19694130 - L2 LINE L2 -13 3259 3217 2318 82 0 0 chr3 198343638 198343919 -19693239 - AluSg SINE Alu -15 295 15 319 0 65 0 chr3 198344055 198344101 -19693057 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 667 128 0 0 chr3 198344103 198344197 -19692961 - AluSq SINE Alu -32 281 188 1550 65 0 11 chr3 198344340 198344525 -19692633 - AluSq SINE Alu -130 183 1 263 190 103 0 chr3 198344843 198344940 -19692218 - L1MC/D LINE L1 -316 5805 5695 2258 84 17 0 chr3 198345934 198346233 -19690925 + L1PA8A LINE L1 5801 6104 -27 183 42 0 0 chr3 198347214 198347238 -19689920 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 200 326 163 0 chr3 198347388 198347529 -19689629 + MIR3 SINE MIR 35 198 -10 483 100 0 0 chr3 198348361 198348431 -19688727 + (TTCC)n Simple_repeat Simple_repeat 1 70 0 288 146 34 0 chr3 198349046 198349135 -19688023 + (TA)n Simple_repeat Simple_repeat 1 92 0 2092 118 3 10 chr3 198349135 198349289 -19687869 - AluSx SINE Alu -25 287 134 2334 97 7 0 chr3 198349289 198349599 -19687559 - AluSp SINE Alu -1 312 1 2092 118 3 10 chr3 198349599 198349733 -19687425 - AluSx SINE Alu -178 134 1 279 235 15 0 chr3 198349972 198350040 -19687118 + (TG)n Simple_repeat Simple_repeat 2 70 0 427 271 193 10 chr3 198350902 198351109 -19686049 - MIR SINE MIR 0 262 18 206 275 286 0 chr3 198351478 198351569 -19685589 - L2 LINE L2 -1 3271 3155 711 231 28 32 chr3 198351625 198351841 -19685317 + MIR SINE MIR 8 222 -40 275 211 0 0 chr3 198352156 198352213 -19684945 - MIR SINE MIR -44 218 162 2368 87 0 0 chr3 198352851 198353138 -19684020 + AluSq SINE Alu 1 287 -26 343 214 36 0 chr3 198353142 198353226 -19683932 + L1MCa LINE L1 1979 2065 -4361 222 264 46 35 chr3 198353422 198353509 -19683649 - MIR SINE MIR -108 154 67 2150 71 10 71 chr3 198354596 198354906 -19682252 - AluSx SINE Alu -16 296 6 544 177 143 63 chr3 198355500 198355675 -19681483 - MER5A DNA MER1_type 0 189 1 287 205 56 23 chr3 198356926 198357010 -19680148 - Charlie8 DNA MER1_type -2 2415 246 471 300 140 16 chr3 198357119 198357362 -19679796 - Charlie8 DNA MER1_type -2142 275 3 2185 101 0 13 chr3 198358168 198358466 -19678692 - AluY SINE Alu -17 294 1 1808 135 45 0 chr3 198359011 198359317 -19677841 + AluSc SINE Alu 1 318 0 1709 160 0 49 chr3 198359330 198359636 -19677522 + AluJb SINE Alu 1 291 -21 421 231 33 16 chr3 198360122 198360259 -19676899 + MIR SINE MIR 11 148 -62 2572 44 0 0 chr3 198361371 198361666 -19675492 - AluY SINE Alu -16 295 1 313 219 235 0 chr3 198361689 198361808 -19675350 - L1ME4a LINE L1 0 6121 5975 2366 85 0 3 chr3 198361855 198362149 -19675009 - AluSg SINE Alu -17 293 1 367 246 55 9 chr3 198362281 198362391 -19674767 + MER103 DNA DNA 50 164 -2 2340 81 0 0 chr3 198362551 198362836 -19674322 - AluSc SINE Alu -20 289 5 2621 50 0 0 chr3 198363151 198363451 -19673707 - AluY SINE Alu -11 300 1 2315 99 0 16 chr3 198364310 198364624 -19672534 + AluSc SINE Alu 1 309 0 289 78 314 0 chr3 198364630 198364681 -19672477 - L1MB7 LINE L1 -10 6174 6108 4685 164 49 18 chr3 198364799 198365167 -19671991 - L1MB7 LINE L1 -15 6169 5814 2075 132 0 0 chr3 198365167 198365478 -19671680 + AluSx SINE Alu 1 311 0 4685 164 49 18 chr3 198365478 198366464 -19670694 - L1MB7 LINE L1 -370 5814 4771 2235 107 3 0 chr3 198366464 198366754 -19670404 - AluSx SINE Alu -21 291 1 4685 164 49 18 chr3 198366754 198366784 -19670374 - L1MB7 LINE L1 -1413 4771 4743 183 80 0 0 chr3 198366819 198366844 -19670314 + (A)n Simple_repeat Simple_repeat 1 25 0 288 0 0 0 chr3 198367052 198367084 -19670074 + (TG)n Simple_repeat Simple_repeat 1 32 0 2335 90 3 0 chr3 198368846 198369146 -19668012 - AluSg SINE Alu -9 301 1 719 199 213 9 chr3 198369480 198369696 -19667462 - MIR SINE MIR -2 260 1 853 222 11 16 chr3 198370095 198370284 -19666874 - MIR SINE MIR -74 188 1 1276 108 0 0 chr3 198370287 198370454 -19666704 - AluSg/x SINE Alu -6 306 140 292 333 75 0 chr3 198370510 198370630 -19666528 + L2 LINE L2 3125 3253 -19 229 220 17 17 chr3 198371528 198371587 -19665571 + L2 LINE L2 3214 3272 0 1975 152 0 3 chr3 198372287 198372577 -19664581 - AluSx SINE Alu -23 289 1 234 256 49 12 chr3 198373067 198373149 -19664009 - L1MB7 LINE L1 -1566 4580 4496 2199 105 0 10 chr3 198373478 198373774 -19663384 - AluSc SINE Alu -16 293 1 764 278 105 52 chr3 198373860 198374315 -19662843 - MLT1K LTR MaLR -21 567 80 855 144 120 0 chr3 198374315 198374482 -19662676 + MER5A DNA MER1_type 1 187 -2 764 278 105 52 chr3 198374482 198374541 -19662617 - MLT1K LTR MaLR -508 80 26 856 116 0 0 chr3 198375910 198376031 -19661127 + MSTB LTR MaLR 1 121 -305 857 214 17 30 chr3 198376417 198376651 -19660507 - LTR37B LTR ERV1 0 468 238 1665 210 37 17 chr3 198376811 198377163 -19659995 - MSTB LTR MaLR 0 426 68 6821 120 106 143 chr3 198377164 198378893 -19658265 - pTR5 LTR ERV1 -5 2433 769 674 46 0 35 chr3 198378901 198378988 -19658170 - MSTB LTR MaLR -342 84 1 401 272 35 3 chr3 198379029 198379192 -19657966 - MER58C DNA MER1_type 0 215 2 270 184 245 20 chr3 198379192 198379289 -19657869 - LTR37B LTR ERV1 -347 121 3 225 0 0 0 chr3 198379727 198379752 -19657406 + (T)n Simple_repeat Simple_repeat 1 25 0 203 326 102 0 chr3 198379766 198379864 -19657294 - MIR SINE MIR -79 129 22 182 167 0 24 chr3 198381045 198381087 -19656071 + CT-rich Low_complexity Low_complexity 3 43 0 2494 71 0 0 chr3 198381307 198381617 -19655541 - AluY SINE Alu -1 310 1 192 231 51 26 chr3 198382771 198382849 -19654309 - MIR3 SINE MIR -3 205 126 2048 199 21 12 chr3 198382855 198383287 -19653871 + MER63B DNA MER1_type 1 436 0 270 214 161 27 chr3 198383725 198383837 -19653321 + L2 LINE L2 2618 2744 -570 296 229 82 82 chr3 198384200 198384383 -19652775 - L2 LINE L2 -568 2746 2564 207 0 0 0 chr3 198384592 198384615 -19652543 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 2907 167 22 30 chr3 198384615 198385007 -19652151 - L1MB7 LINE L1 -66 6118 5731 2201 121 0 22 chr3 198385007 198385321 -19651837 - AluSq SINE Alu -6 307 1 2907 167 22 30 chr3 198385321 198385521 -19651637 - L1MB7 LINE L1 -453 5731 5531 1058 261 140 34 chr3 198386532 198386968 -19650190 + LTR16C LTR ERVL 1 482 -9 228 267 87 70 chr3 198387098 198387270 -19649888 + MIR SINE MIR 44 218 -44 2272 85 0 29 chr3 198387607 198387914 -19649244 - AluSx SINE Alu -14 298 1 475 292 37 25 chr3 198388328 198388489 -19648669 + MIR SINE MIR 14 176 -86 7199 131 48 11 chr3 198389932 198390510 -19646648 - Tigger3b DNA MER2_type -1797 1231 676 2244 106 20 0 chr3 198390510 198390811 -19646347 - AluSx SINE Alu -5 307 1 7199 131 48 11 chr3 198390811 198391419 -19645739 - Tigger3b DNA MER2_type -2352 676 1 392 222 79 114 chr3 198391589 198391932 -19645226 - L1ME4a LINE L1 0 6121 5791 495 238 201 46 chr3 198391936 198392356 -19644802 - L1ME4a LINE L1 -378 5743 5255 243 198 62 49 chr3 198393160 198393241 -19643917 + L2 LINE L2 2993 3074 -198 335 277 9 36 chr3 198393797 198393909 -19643249 + L2 LINE L2 3205 3313 0 556 144 0 41 chr3 198393938 198394035 -19643123 + FLAM_A SINE Alu 34 126 -16 1875 158 3 37 chr3 198394157 198394480 -19642678 - AluJb SINE Alu 0 312 1 671 140 0 28 chr3 198394494 198394601 -19642557 - FLAM_C SINE Alu -16 127 24 2472 91 0 0 chr3 198394652 198394961 -19642197 - AluSg SINE Alu -1 309 1 2224 92 4 0 chr3 198395216 198395522 -19641636 - AluSp SINE Alu 0 307 1 250 306 126 9 chr3 198395719 198395830 -19641328 + L2 LINE L2 3149 3272 0 23 0 0 0 chr3 198397147 198397170 -19639988 + AT_rich Low_complexity Low_complexity 1 23 0 958 165 6 6 chr3 198397585 198397743 -19639415 - FRAM SINE Alu -7 169 12 181 121 0 30 chr3 198397987 198398020 -19639138 + MER5A DNA MER1_type 45 76 -113 * 378 198 0 112 chr3 198398012 198398056 -19639102 - MER5A DNA MER1_type -80 109 62 1872 71 34 0 chr3 198398056 198398317 -19638841 - AluY SINE Alu 0 305 37 378 198 0 112 chr3 198398317 198398387 -19638771 - MER5A DNA MER1_type -127 62 7 193 219 219 0 chr3 198399122 198399186 -19637972 + L2 LINE L2 3228 3305 -8 2321 104 0 0 chr3 198400110 198400407 -19636751 - AluSq SINE Alu -16 297 1 653 135 0 0 chr3 198400440 198400544 -19636614 - L1MB3 LINE L1 -7 6176 6073 2306 89 14 0 chr3 198401088 198401381 -19635777 + AluSg SINE Alu 1 297 -13 498 262 167 0 chr3 198401606 198401793 -19635365 + MER5C DNA MER1_type 4 158 -166 1828 116 14 0 chr3 198401793 198402070 -19635088 - L1MA3 LINE L1 0 6305 6025 498 262 167 0 chr3 198402070 198402157 -19635001 + MER5C DNA MER1_type 158 324 0 228 317 50 10 chr3 198402602 198402703 -19634455 - L2 LINE L2 0 3272 3168 1755 174 3 23 chr3 198403169 198403474 -19633684 + AluJo SINE Alu 1 299 -13 2430 104 0 0 chr3 198403474 198403783 -19633375 + AluSx SINE Alu 1 309 -3 1952 133 28 0 chr3 198404236 198404522 -19632636 + AluSx SINE Alu 1 294 -18 428 226 78 0 chr3 198405002 198405117 -19632041 - L2 LINE L2 0 3313 3190 299 29 0 0 chr3 198405151 198405185 -19631973 - THE1B LTR MaLR 0 364 331 * 1117 68 14 0 chr3 198405181 198405328 -19631830 - THE1B LTR MaLR -215 149 1 243 324 86 2 chr3 198405328 198405637 -19631521 - L2 LINE L2 -147 3166 2826 326 295 30 81 chr3 198405902 198405981 -19631177 + MIR SINE MIR 8 90 -172 1673 184 4 7 chr3 198405981 198406258 -19630900 - AluJb SINE Alu -17 295 20 326 295 30 81 chr3 198406258 198406412 -19630746 + MIR SINE MIR 90 229 -33 6426 62 44 41 chr3 198406464 198407409 -19629749 - SVA Other Other 0 1386 439 5892 56 35 95 chr3 198408189 198409300 -19627858 - SVA Other Other -520 866 1 1592 178 125 58 chr3 198409311 198409743 -19627415 - MER31B LTR ERV1 0 466 6 2100 148 0 0 chr3 198409764 198410067 -19627091 - AluSx SINE Alu -9 303 1 519 286 16 39 chr3 198410112 198410294 -19626864 + MER5B DNA MER1_type 1 178 0 239 252 173 31 chr3 198410585 198410712 -19626446 + L1ME4a LINE L1 5974 6118 -3 2080 114 26 0 chr3 198411424 198411696 -19625462 + AluSx SINE Alu 1 279 -33 194 0 39 0 chr3 198411698 198411724 -19625434 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 212 327 26 9 chr3 198411729 198411842 -19625316 + MER5A DNA MER1_type 69 183 -6 298 274 85 0 chr3 198411935 198412041 -19625117 - MER91C DNA MER1_type -19 121 7 227 300 56 0 chr3 198412729 198412819 -19624339 + MIR SINE MIR 20 114 -94 467 234 188 31 chr3 198413263 198413455 -19623703 + MER102b DNA MER1_type 120 341 0 490 254 75 8 chr3 198414104 198414238 -19622920 - MIR SINE MIR -117 145 3 278 206 28 112 chr3 198415714 198415821 -19621337 - L1MC5 LINE L1 -30 7931 7834 180 185 31 15 chr3 198415859 198415924 -19621234 + CT-rich Low_complexity Low_complexity 3 68 0 1596 179 7 34 chr3 198416046 198416343 -19620815 + AluJo SINE Alu 1 289 -23 230 250 220 12 chr3 198416450 198416618 -19620540 - L1MC5 LINE L1 -457 7504 7302 602 230 68 0 chr3 198417528 198417689 -19619469 + MIR SINE MIR 72 243 -19 182 320 107 27 chr3 198418780 198418855 -19618303 + MIR SINE MIR 107 187 -75 216 0 0 0 chr3 198419122 198419146 -19618012 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2221 106 0 3 chr3 198419839 198420154 -19617004 - AluSq SINE Alu 0 314 1 217 305 0 0 chr3 198420349 198420408 -19616750 + MIR SINE MIR 203 261 -1 189 261 0 0 chr3 198420410 198420456 -19616702 + MIR SINE MIR 100 145 -117 2318 82 0 0 chr3 198421065 198421346 -19615812 - AluSg SINE Alu -15 295 15 319 0 65 0 chr3 198421482 198421528 -19615630 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 667 128 0 0 chr3 198421530 198421624 -19615534 - AluSq SINE Alu -32 281 188 1550 65 0 11 chr3 198421767 198421952 -19615206 - AluSq SINE Alu -130 183 1 263 190 103 0 chr3 198422270 198422367 -19614791 - L1MC/D LINE L1 -316 5805 5695 2258 84 17 0 chr3 198423361 198423660 -19613498 + L1PA8A LINE L1 5801 6104 -27 183 42 0 0 chr3 198424641 198424665 -19612493 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 200 326 163 0 chr3 198424815 198424956 -19612202 + MIR3 SINE MIR 35 198 -10 483 100 0 0 chr3 198425788 198425858 -19611300 + (TTCC)n Simple_repeat Simple_repeat 1 70 0 288 146 34 0 chr3 198426473 198426562 -19610596 + (TA)n Simple_repeat Simple_repeat 1 92 0 2092 118 3 10 chr3 198426562 198426716 -19610442 - AluSx SINE Alu -25 287 134 2334 97 7 0 chr3 198426716 198427026 -19610132 - AluSp SINE Alu -1 312 1 2092 118 3 10 chr3 198427026 198427160 -19609998 - AluSx SINE Alu -178 134 1 279 235 15 0 chr3 198427399 198427467 -19609691 + (TG)n Simple_repeat Simple_repeat 2 70 0 427 271 193 10 chr3 198428329 198428536 -19608622 - MIR SINE MIR 0 262 18 206 233 289 0 chr3 198428905 198428995 -19608163 - L2 LINE L2 -1 3312 3197 711 231 28 32 chr3 198429052 198429268 -19607890 + MIR SINE MIR 8 222 -40 275 211 0 0 chr3 198429583 198429640 -19607518 - MIR SINE MIR -44 218 162 2368 87 0 0 chr3 198430278 198430565 -19606593 + AluSq SINE Alu 1 287 -26 343 214 36 0 chr3 198430569 198430653 -19606505 + L1MCa LINE L1 1979 2065 -4361 222 264 46 35 chr3 198430849 198430936 -19606222 - MIR SINE MIR -108 154 67 2150 71 10 71 chr3 198432023 198432333 -19604825 - AluSx SINE Alu -16 296 6 544 177 143 63 chr3 198432927 198433102 -19604056 - MER5A DNA MER1_type 0 189 1 287 205 56 23 chr3 198434353 198434437 -19602721 - Charlie8 DNA MER1_type -2 2415 1344 471 300 140 16 chr3 198434546 198434789 -19602369 - Charlie8 DNA MER1_type -2142 275 3 2185 101 0 13 chr3 198435595 198435893 -19601265 - AluY SINE Alu -17 294 1 1808 135 45 0 chr3 198436438 198436744 -19600414 + AluSc SINE Alu 1 318 0 1709 160 0 49 chr3 198436757 198437063 -19600095 + AluJb SINE Alu 1 291 -21 421 231 33 16 chr3 198437549 198437686 -19599472 + MIR SINE MIR 11 148 -62 2572 44 0 0 chr3 198438798 198439093 -19598065 - AluY SINE Alu -16 295 1 313 219 235 0 chr3 198439116 198439235 -19597923 - L1ME4a LINE L1 0 6121 5975 2366 85 0 3 chr3 198439282 198439576 -19597582 - AluSg SINE Alu -17 293 1 375 246 55 9 chr3 198439708 198439818 -19597340 + MER103 DNA DNA 50 164 -2 2340 81 0 0 chr3 198439978 198440263 -19596895 - AluSc SINE Alu -20 289 5 2595 50 0 0 chr3 198440578 198440878 -19596280 - AluY SINE Alu -11 300 1 2296 99 0 16 chr3 198441737 198442051 -19595107 + AluSc SINE Alu 1 309 0 292 78 314 0 chr3 198442057 198442108 -19595050 - L1MB7 LINE L1 -10 6174 6108 4741 164 49 18 chr3 198442226 198442594 -19594564 - L1MB7 LINE L1 -15 6169 5814 2053 132 0 0 chr3 198442594 198442905 -19594253 + AluSx SINE Alu 1 311 0 4741 164 49 18 chr3 198442905 198443891 -19593267 - L1MB7 LINE L1 -370 5814 4771 2213 107 3 0 chr3 198443891 198444181 -19592977 - AluSx SINE Alu -21 291 1 4741 164 49 18 chr3 198444181 198444211 -19592947 - L1MB7 LINE L1 -1413 4771 4743 183 80 0 0 chr3 198444246 198444271 -19592887 + (A)n Simple_repeat Simple_repeat 1 25 0 288 0 0 0 chr3 198444479 198444511 -19592647 + (TG)n Simple_repeat Simple_repeat 1 32 0 2315 90 3 0 chr3 198446273 198446573 -19590585 - AluSg SINE Alu -9 301 1 790 199 213 9 chr3 198446907 198447123 -19590035 - MIR SINE MIR -2 260 1 911 222 11 16 chr3 198447522 198447711 -19589447 - MIR SINE MIR -74 188 1 1268 108 0 0 chr3 198447714 198447881 -19589277 - AluSg/x SINE Alu -6 304 138 330 333 75 0 chr3 198447937 198448057 -19589101 + L2 LINE L2 3125 3253 -19 249 220 17 17 chr3 198448955 198449014 -19588144 + L2 LINE L2 3214 3272 0 1958 152 0 3 chr3 198449714 198450004 -19587154 - AluSx SINE Alu -23 289 1 238 256 49 12 chr3 198450494 198450576 -19586582 - L1MB7 LINE L1 -1566 4580 4496 2184 105 0 10 chr3 198450905 198451201 -19585957 - AluSc SINE Alu -16 293 1 748 278 105 52 chr3 198451287 198451742 -19585416 - MLT1K LTR MaLR -21 567 80 916 144 120 0 chr3 198451742 198451909 -19585249 + MER5A DNA MER1_type 1 187 -2 748 278 105 52 chr3 198451909 198451968 -19585190 - MLT1K LTR MaLR -508 80 26 186 152 0 0 chr3 198452221 198452254 -19584904 - L2 LINE L2 -18 3254 3222 854 116 0 0 chr3 198453337 198453458 -19583700 + MSTB LTR MaLR 1 121 -305 873 214 17 30 chr3 198453844 198454078 -19583080 - LTR37B LTR ERV1 0 468 238 229 184 30 28 chr3 198454117 198454234 -19582924 - LTR37B LTR ERV1 -226 242 155 1666 210 37 17 chr3 198454238 198454590 -19582568 - MSTB LTR MaLR 0 426 68 6709 120 106 143 chr3 198454591 198456320 -19580838 - pTR5 LTR ERV1 -5 2433 769 670 46 0 35 chr3 198456328 198456415 -19580743 - MSTB LTR MaLR -342 84 1 404 272 35 3 chr3 198456456 198456619 -19580539 - MER58C DNA MER1_type 0 215 2 272 184 245 20 chr3 198456619 198456716 -19580442 - LTR37B LTR ERV1 -347 121 3 225 0 0 0 chr3 198457154 198457179 -19579979 + (T)n Simple_repeat Simple_repeat 1 25 0 2038 134 13 7 chr3 198457739 198458046 -19579112 - AluJb SINE Alu -3 309 1 1164 223 66 113 chr3 198458605 198458777 -19578381 - L2 LINE L2 0 3313 3134 2302 103 0 7 chr3 198458777 198459079 -19578079 + AluSq SINE Alu 1 300 -13 1164 223 66 113 chr3 198459079 198459537 -19577621 - L2 LINE L2 -179 3134 2695 2093 116 13 7 chr3 198459547 198459850 -19577308 + AluSg SINE Alu 1 305 -5 252 86 0 0 chr3 198460015 198460050 -19577108 + (A)n Simple_repeat Simple_repeat 1 35 0 975 189 144 52 chr3 198460052 198460343 -19576815 - L2 LINE L2 -613 2701 2384 2251 210 2 0 chr3 198460346 198460775 -19576383 + L1M4 LINE L1 3959 4388 -1758 521 224 175 45 chr3 198460776 198461022 -19576136 - L2 LINE L2 -1110 2204 1927 526 213 183 43 chr3 198461096 198461326 -19575832 - MER5C DNA MER1_type -59 265 4 310 274 89 77 chr3 198461597 198461765 -19575393 - MIR SINE MIR -70 192 23 626 268 67 31 chr3 198462153 198462347 -19574811 - MIR SINE MIR -13 249 49 873 136 9 150 chr3 198462430 198462650 -19574508 + MER53 DNA DNA 1 189 0 2177 134 3 0 chr3 198463042 198463340 -19573818 - AluSq SINE Alu -14 299 1 377 239 149 102 chr3 198463462 198463972 -19573186 - L1ME4a LINE L1 -6 6115 5582 844 190 57 13 chr3 198464015 198464173 -19572985 + FRAM SINE Alu 1 163 -13 332 192 129 12 chr3 198466045 198466186 -19570972 + MIR SINE MIR 14 143 -65 23 54 0 0 chr3 198466658 198466695 -19570463 + AT_rich Low_complexity Low_complexity 1 37 0 439 277 128 7 chr3 198467565 198467713 -19569445 + MIR3 SINE MIR 38 203 -5 2109 105 39 0 chr3 198467904 198468189 -19568969 - AluSx SINE Alu -16 296 1 1240 196 24 71 chr3 198468702 198469038 -19568120 + MER33 DNA MER1_type 1 320 -4 1997 176 156 31 chr3 198470087 198470362 -19566796 - MLT1D LTR MaLR -1 504 265 2109 141 0 0 chr3 198470362 198470661 -19566497 + AluSx SINE Alu 1 299 -13 1997 176 156 31 chr3 198470661 198470833 -19566325 - MLT1D LTR MaLR -240 265 1 381 294 25 8 chr3 198471295 198471414 -19565744 + MIR SINE MIR 34 154 -108 4648 262 96 17 chr3 198471648 198473498 -19563660 - L2 LINE L2 -6 3307 1306 502 315 161 20 chr3 198474832 198475223 -19561935 + L2 LINE L2 2862 3307 -6 23 0 0 0 chr3 198475250 198475273 -19561885 + AT_rich Low_complexity Low_complexity 1 23 0 234 0 0 0 chr3 198477901 198477927 -19559231 + (TA)n Simple_repeat Simple_repeat 2 27 0 2375 88 0 0 chr3 198479218 198479513 -19557645 - AluSg SINE Alu -15 295 1 23 0 0 0 chr3 198479543 198479566 -19557592 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 198481077 198481099 -19556059 + AT_rich Low_complexity Low_complexity 1 22 0 2364 100 7 0 chr3 198482548 198482858 -19554300 + AluSx SINE Alu 1 312 0 2415 167 95 4 chr3 198483281 198483754 -19553404 + Charlie1b DNA MER1_type 1 516 -7 2185 107 10 0 chr3 198485133 198485422 -19551736 + AluSx SINE Alu 2 293 -19 207 0 0 0 chr3 198485442 198485465 -19551693 + (T)n Simple_repeat Simple_repeat 1 23 0 440 97 0 0 chr3 198485575 198485637 -19551521 + MER53 DNA DNA 3 64 -125 * 1267 155 30 2 chr3 198485635 198485923 -19551235 + MER2 DNA MER2_type 5 345 0 658 91 101 0 chr3 198485933 198486032 -19551126 - MER53 DNA DNA -80 109 1 216 209 64 9 chr3 198486287 198486397 -19550761 + (TA)n Simple_repeat Simple_repeat 2 117 0 439 303 91 39 chr3 198486956 198487187 -19549971 - MIR SINE MIR 0 262 20 291 222 93 28 chr3 198487242 198487350 -19549808 - L1ME4a LINE L1 0 6121 6007 183 352 14 14 chr3 198487497 198487568 -19549590 + MIR SINE MIR 40 110 -98 291 328 52 8 chr3 198487654 198487788 -19549370 + MER5A DNA MER1_type 47 186 -3 2632 45 10 0 chr3 198489091 198489399 -19547759 + AluY SINE Alu 1 311 0 2201 115 23 0 chr3 198490298 198490602 -19546556 - AluSx SINE Alu -1 311 1 362 245 213 19 chr3 198490796 198490951 -19546207 - MER5A DNA MER1_type -1 188 4 570 227 70 41 chr3 198491018 198491190 -19545968 + MER5B DNA MER1_type 2 178 0 330 283 115 18 chr3 198491194 198491307 -19545851 + MIR SINE MIR 23 146 -62 285 29 0 0 chr3 198491451 198491509 -19545649 + (TG)n Simple_repeat Simple_repeat 1 92 0 285 29 0 0 chr3 198491509 198491543 -19545615 + (TG)n Simple_repeat Simple_repeat 1 34 0 357 269 119 5 chr3 198492719 198492920 -19544238 - L1ME4a LINE L1 -206 5915 5692 219 282 40 73 chr3 198493590 198493714 -19543444 + MIR SINE MIR 118 237 -25 1935 130 3 42 chr3 198493798 198493960 -19543198 - AluSx SINE Alu -16 296 150 2735 26 0 0 chr3 198493960 198494271 -19542887 - AluYb8 SINE Alu -7 311 1 1935 130 3 42 chr3 198494271 198494416 -19542742 - AluSx SINE Alu -162 150 1 976 251 18 4 chr3 198494583 198494810 -19542348 - MIR SINE MIR -31 231 2 193 333 0 0 chr3 198495446 198495494 -19541664 + L2 LINE L2 3208 3255 -17 2188 106 3 0 chr3 198495599 198495891 -19541267 + AluSx SINE Alu 2 294 -18 5436 47 12 0 chr3 198496369 198497034 -19540124 + L1PA7 LINE L1 5471 6143 -11 51 17 0 0 chr3 198497036 198497094 -19540064 + AT_rich Low_complexity Low_complexity 1 58 0 335 250 54 20 chr3 198497098 198497246 -19539912 - L1ME4a LINE L1 -3 6118 5966 750 200 26 26 chr3 198497296 198497486 -19539672 - MER106A DNA MER1_type -46 190 1 866 238 39 12 chr3 198497640 198497930 -19539228 - L1ME4a LINE L1 -331 5790 5522 204 333 175 0 chr3 198498392 198498455 -19538703 + L2 LINE L2 3191 3264 -8 28 79 0 0 chr3 198498513 198498576 -19538582 + AT_rich Low_complexity Low_complexity 1 63 0 3497 87 5 48 chr3 198498576 198499137 -19538021 - L1MA3 LINE L1 0 6305 5769 898 137 20 14 chr3 198499139 198499285 -19537873 - FRAM SINE Alu -11 165 19 248 160 0 0 chr3 198499327 198499377 -19537781 - Alu SINE Alu 0 302 253 435 84 0 15 chr3 198499377 198499453 -19537705 - L1P5 LINE L1 -374 5780 5706 192 219 49 0 chr3 198500694 198500735 -19536423 - L2 LINE L2 -15 3257 3215 412 307 20 7 chr3 198502108 198502261 -19534897 + L1ME4a LINE L1 5963 6117 -4 351 348 96 6 chr3 198503157 198503335 -19533823 + MIR SINE MIR 8 201 -61 230 304 7 7 chr3 198503551 198503686 -19533472 + L1ME LINE L1 5739 5873 -248 283 198 0 93 chr3 198504030 198504116 -19533042 + MIR3 SINE MIR 83 160 -48 28 0 0 0 chr3 198504343 198504371 -19532787 + AT_rich Low_complexity Low_complexity 1 28 0 228 35 0 0 chr3 198504660 198504689 -19532469 + (CAAAC)n Simple_repeat Simple_repeat 2 30 0 2394 88 3 3 chr3 198504719 198505025 -19532133 + AluSp SINE Alu 1 306 -7 551 338 202 4 chr3 198505210 198505754 -19531404 + L3 LINE CR1 921 1572 -5 415 316 142 0 chr3 198505934 198506124 -19531034 + MIR SINE MIR 1 217 -45 190 290 0 43 chr3 198507287 198507356 -19529802 - MIR SINE MIR -144 118 53 1188 273 75 27 chr3 198507477 198507917 -19529241 + MLT1G1 LTR MaLR 135 595 0 1636 152 51 82 chr3 198508151 198508612 -19528546 + MER31B LTR ERV1 19 543 0 265 266 138 1 chr3 198508654 198508830 -19528328 + MER102b DNA MER1_type 113 341 0 347 226 57 9 chr3 198508839 198508945 -19528213 + MER103 DNA DNA 48 158 -8 276 30 0 0 chr3 198508953 198508986 -19528172 + (TG)n Simple_repeat Simple_repeat 2 34 0 688 276 114 5 chr3 198509687 198509897 -19527261 + MIR SINE MIR 11 243 -19 2299 75 6 62 chr3 198510068 198510390 -19526768 - AluSq SINE Alu -9 304 1 2232 90 3 20 chr3 198511331 198511631 -19525527 + AluSg1 SINE Alu 1 295 -14 616 312 85 56 chr3 198511765 198512527 -19524631 - L2 LINE L2 0 3272 2471 270 95 0 0 chr3 198512531 198512573 -19524585 + (GA)n Simple_repeat Simple_repeat 2 43 0 894 194 0 2 chr3 198512603 198513212 -19523946 + (CCTA)n Simple_repeat Simple_repeat 1 608 0 200 316 158 13 chr3 198513384 198513536 -19523622 - L2 LINE L2 -638 2676 2503 348 291 23 0 chr3 198513628 198513714 -19523444 - MIR SINE MIR -102 106 19 24 32 0 0 chr3 198514135 198514166 -19522992 + AT_rich Low_complexity Low_complexity 1 31 0 1567 179 4 22 chr3 198514167 198514435 -19522723 - AluJo SINE Alu -49 263 1 874 222 44 79 chr3 198515079 198515394 -19521764 + MLT1C LTR MaLR 1 304 -163 198 359 0 13 chr3 198515501 198515579 -19521579 + MIR SINE MIR 38 114 -94 308 336 80 7 chr3 198516284 198516421 -19520737 - L1ME4a LINE L1 -26 6095 5949 481 305 52 0 chr3 198516451 198516605 -19520553 + MIR SINE MIR 93 254 -8 860 132 108 6 chr3 198516689 198516856 -19520302 + LTR54 LTR ERV1 18 201 -309 717 160 16 48 chr3 198516849 198517037 -19520121 + LTR54 LTR ERV1 329 510 0 * 2725 215 46 64 chr3 198517074 198517906 -19519252 + MER57-int LTR ERV1 3365 4181 -690 1379 213 53 18 chr3 198517949 198518316 -19518842 + MER57-int LTR ERV1 4170 6949 -569 21 0 0 0 chr3 198519138 198519159 -19517999 + AT_rich Low_complexity Low_complexity 1 21 0 1550 289 166 34 chr3 198519978 198520457 -19516701 - L2 LINE L2 -42 3271 2857 207 0 0 0 chr3 198520457 198520480 -19516678 + (TG)n Simple_repeat Simple_repeat 2 24 0 2206 132 0 0 chr3 198520480 198520784 -19516374 - AluSq SINE Alu -9 304 1 1550 289 166 34 chr3 198520784 198521403 -19515755 - L2 LINE L2 -455 2858 2042 334 326 51 87 chr3 198521484 198521932 -19515226 + L2 LINE L2 2841 3272 0 21 0 0 0 chr3 198522719 198522740 -19514418 + AT_rich Low_complexity Low_complexity 1 21 0 38 0 0 0 chr3 198522804 198522842 -19514316 + AT_rich Low_complexity Low_complexity 1 38 0 392 343 7 7 chr3 198523305 198523451 -19513707 + L3b LINE CR1 1333 1478 -105 458 231 81 87 chr3 198523475 198523527 -19513631 - MIR3 SINE MIR 0 208 157 723 220 17 6 chr3 198523527 198523700 -19513458 + MER5B DNA MER1_type 1 175 -3 458 231 81 87 chr3 198523700 198523820 -19513338 - MIR3 SINE MIR -51 157 37 263 203 91 77 chr3 198523869 198524012 -19513146 - L1ME4a LINE L1 -12 6109 5965 2556 49 0 7 chr3 198524842 198525147 -19512011 + AluY SINE Alu 1 303 -8 229 284 59 20 chr3 198525969 198526071 -19511087 + MIR3 SINE MIR 50 155 -53 2273 97 0 0 chr3 198526183 198526481 -19510677 + AluSx SINE Alu 1 298 -14 1636 131 45 0 chr3 198526503 198526793 -19510365 - L1MA4 LINE L1 -5 6295 5993 2215 181 6 52 chr3 198526796 198527276 -19509882 + MLT2B1 LTR ERVL 1 458 -62 189 175 0 0 chr3 198527313 198527353 -19509805 + CT-rich Low_complexity Low_complexity 1 40 0 207 0 0 0 chr3 198527355 198527378 -19509780 + (TG)n Simple_repeat Simple_repeat 2 24 0 204 40 0 0 chr3 198527377 198527402 -19509756 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 355 259 0 0 chr3 198527495 198527607 -19509551 + (TA)n Simple_repeat Simple_repeat 2 113 0 307 112 0 9 chr3 198527610 198527665 -19509493 + MLT2B2 LTR ERVL 403 515 0 1310 176 60 30 chr3 198527996 198528263 -19508895 - AluJb SINE Alu -8 304 30 25 0 0 0 chr3 198528263 198528288 -19508870 + AT_rich Low_complexity Low_complexity 1 25 0 1948 170 3 6 chr3 198528564 198528876 -19508282 + AluJb SINE Alu 1 311 -1 190 77 0 0 chr3 198528975 198529001 -19508157 - MIR3 SINE MIR -14 194 169 26 30 0 0 chr3 198529618 198529651 -19507507 + AT_rich Low_complexity Low_complexity 1 33 0 187 286 0 36 chr3 198529706 198529762 -19507396 - MIR3 SINE MIR -42 166 113 2242 117 7 0 chr3 198530422 198530722 -19506436 - AluSq SINE Alu -11 302 1 1729 168 82 9 chr3 198531461 198531801 -19505357 - MLT1A1 LTR MaLR 0 365 1 1199 203 34 13 chr3 198532329 198532824 -19504334 - MLT1F1 LTR MaLR -5 562 1 325 278 72 0 chr3 198533478 198533575 -19503583 + L2 LINE L2 3162 3265 -7 1493 190 0 4 chr3 198534037 198534358 -19502800 - AluJb SINE Alu 0 370 51 307 133 0 0 chr3 198534358 198534403 -19502755 + AluJb SINE Alu 72 116 -186 852 299 100 42 chr3 198535012 198535491 -19501667 - L2 LINE L2 0 3313 2807 317 264 33 8 chr3 198535759 198535880 -19501278 - L1ME4a LINE L1 -9 6112 5989 1919 163 33 28 chr3 198535889 198536252 -19500906 + MLT1A1 LTR MaLR 1 365 0 244 284 119 0 chr3 198536265 198536332 -19500826 + MIR SINE MIR 5 79 -183 435 287 20 7 chr3 198536409 198536559 -19500599 + MIR SINE MIR 110 261 -1 232 289 82 21 chr3 198536767 198536864 -19500294 - L1ME4a LINE L1 -452 5669 5567 217 261 31 31 chr3 198537180 198537245 -19499913 - MIR3 SINE MIR -52 156 92 194 373 27 0 chr3 198537293 198537368 -19499790 + L2 LINE L2 3235 3311 -2 251 293 49 0 chr3 198537428 198537510 -19499648 - MIR SINE MIR -79 129 44 757 315 27 27 chr3 198537563 198537858 -19499300 + L3 LINE CR1 1278 1572 -5 203 261 14 0 chr3 198538695 198538764 -19498394 + CT-rich Low_complexity Low_complexity 3 72 0 184 323 97 0 chr3 198538953 198539015 -19498143 - L2 LINE L2 -38 3275 3208 353 282 21 28 chr3 198539015 198539157 -19498001 - MER117 DNA MER1_type -56 141 1 327 290 221 21 chr3 198539663 198539808 -19497350 - MER5B DNA MER1_type 0 178 5 21 36 0 0 chr3 198540172 198540200 -19496958 + AT_rich Low_complexity Low_complexity 1 28 0 230 286 95 63 chr3 198540412 198540538 -19496620 + L2 LINE L2 3159 3288 -25 518 230 118 12 chr3 198540703 198540864 -19496294 + MER5B DNA MER1_type 1 178 0 710 281 118 0 chr3 198540991 198541194 -19495964 - MIR SINE MIR -34 228 2 229 157 57 86 chr3 198541440 198541510 -19495648 + L2 LINE L2 3237 3304 -9 988 203 107 34 chr3 198542232 198542582 -19494576 - MLT1C LTR MaLR 0 467 100 453 259 26 52 chr3 198542733 198542926 -19494232 + LTR37B LTR ERV1 206 393 -75 4913 153 20 4 chr3 198542972 198544131 -19493027 + L1M2 LINE L1 4479 5650 -641 367 23 0 0 chr3 198544131 198544175 -19492983 + THE1B LTR MaLR 1 44 -320 415 141 106 0 chr3 198544293 198544378 -19492780 - MLT1C LTR MaLR -271 94 1 705 305 107 48 chr3 198544777 198545256 -19491902 + L2 LINE L2 2807 3313 0 198 206 0 0 chr3 198545537 198545571 -19491587 + MIR SINE MIR 218 251 -11 1288 162 124 45 chr3 198546789 198547054 -19490104 + AluJo SINE Alu 6 291 -21 201 195 0 0 chr3 198547103 198547144 -19490014 + (TG)n Simple_repeat Simple_repeat 1 41 0 2326 79 3 3 chr3 198547483 198547773 -19489385 + AluSp SINE Alu 3 292 -21 433 299 79 0 chr3 198548004 198548131 -19489027 - MIR SINE MIR -49 213 77 1761 188 45 22 chr3 198548131 198548583 -19488575 + MLT1D LTR MaLR 1 505 0 24 96 0 0 chr3 198548945 198549018 -19488140 + AT_rich Low_complexity Low_complexity 1 73 0 1432 207 67 71 chr3 198549196 198549344 -19487814 + MLT1C LTR MaLR 35 182 -285 2302 101 0 0 chr3 198549344 198549641 -19487517 + AluY SINE Alu 1 297 -14 1432 207 67 71 chr3 198549641 198549927 -19487231 + MLT1C LTR MaLR 182 467 0 425 271 171 18 chr3 198550476 198550646 -19486512 - MIR SINE MIR -41 221 26 205 232 14 72 chr3 198551030 198551099 -19486059 - L2 LINE L2 0 3313 3249 201 39 0 0 chr3 198551867 198551893 -19485265 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1747 157 15 55 chr3 198552731 198553056 -19484102 - AluJo SINE Alu 0 312 1 25 0 0 0 chr3 198553734 198553759 -19483399 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr3 198554939 198554964 -19482194 + AT_rich Low_complexity Low_complexity 1 25 0 221 304 94 89 chr3 198556254 198556445 -19480713 + L2 LINE L2 2987 3178 -94 764 171 0 0 chr3 198557919 198558042 -19479116 - FLAM_A SINE Alu -10 123 1 1266 151 80 55 chr3 198559039 198559350 -19477808 - MER33 DNA MER1_type -5 319 1 25 65 0 0 chr3 198561007 198561053 -19476105 + AT_rich Low_complexity Low_complexity 1 46 0 221 197 15 0 chr3 198562986 198563052 -19474106 + (TA)n Simple_repeat Simple_repeat 2 68 0 23 33 0 0 chr3 198564314 198564344 -19472814 + AT_rich Low_complexity Low_complexity 1 30 0 203 0 37 0 chr3 198564520 198564547 -19472611 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 399 304 83 9 chr3 198566046 198566263 -19470895 - MIR SINE MIR -28 234 2 34 0 0 0 chr3 198567028 198567062 -19470096 + AT_rich Low_complexity Low_complexity 1 34 0 1695 182 0 29 chr3 198567195 198567508 -19469650 - AluJb SINE Alu -7 305 2 937 182 74 56 chr3 198568512 198568781 -19468377 + ORSL DNA AcHobo 1 274 -1 2331 36 50 4 chr3 198569257 198569538 -19467620 - AluY SINE Alu -17 294 1 238 276 55 102 chr3 198569775 198569902 -19467256 + L2 LINE L2 3139 3259 -13 21 0 0 0 chr3 198570109 198570130 -19467028 + AT_rich Low_complexity Low_complexity 1 21 0 1765 168 17 7 chr3 198571291 198571588 -19465570 - AluJo SINE Alu -7 305 6 408 343 46 14 chr3 198572368 198572451 -19464707 + MIR SINE MIR 33 112 -150 3427 41 2 0 chr3 198572451 198572867 -19464291 - L1PA4 LINE L1 -3 6152 5736 408 343 46 14 chr3 198572867 198573002 -19464156 + MIR SINE MIR 112 258 -4 520 264 78 12 chr3 198573071 198573238 -19463920 - L1ME3A LINE L1 -296 5874 5697 2216 138 10 40 chr3 198573576 198573974 -19463184 + MLT1B LTR MaLR 1 386 -4 224 210 143 92 chr3 198575379 198575498 -19461660 + MIR SINE MIR 82 206 -56 222 333 55 65 chr3 198578244 198578445 -19458713 + L2 LINE L2 2837 3035 -237 356 271 35 0 chr3 198579081 198579166 -19457992 + L2 LINE L2 3220 3307 -6 322 244 67 25 chr3 198579908 198580027 -19457131 - MIR SINE MIR -72 190 67 790 256 76 32 chr3 198580046 198580127 -19457031 - MIR SINE MIR 0 262 186 6921 136 19 34 chr3 198580127 198580657 -19456501 - Tigger3b DNA MER2_type -1797 1231 695 2099 134 0 0 chr3 198580657 198580948 -19456210 - AluSx SINE Alu -21 291 1 6921 136 19 34 chr3 198580948 198581636 -19455522 - Tigger3b DNA MER2_type -2333 695 29 2247 83 3 30 chr3 198581636 198581937 -19455221 - AluSp SINE Alu -20 293 1 6921 136 19 34 chr3 198581937 198581966 -19455192 - Tigger3b DNA MER2_type -2999 29 1 790 256 76 32 chr3 198581966 198582134 -19455024 - MIR SINE MIR -76 186 2 197 342 0 53 chr3 198582323 198582399 -19454759 - MIR SINE MIR -171 91 20 317 284 119 15 chr3 198582523 198582657 -19454501 + MIR SINE MIR 28 175 -87 2256 108 0 0 chr3 198583691 198583979 -19453179 - AluSx SINE Alu -22 290 3 240 250 83 52 chr3 198584537 198584633 -19452525 - MIR SINE MIR -79 183 85 395 318 9 0 chr3 198584695 198584805 -19452353 + L2 LINE L2 3199 3309 -4 236 349 66 9 chr3 198586156 198586262 -19450896 - L2 LINE L2 -40 3232 3121 2119 112 6 19 chr3 198586420 198586733 -19450425 - AluSx SINE Alu -3 309 1 2516 59 0 7 chr3 198587105 198587409 -19449749 + AluY SINE Alu 1 302 -9 787 235 22 33 chr3 198587528 198587711 -19449447 + MER5A DNA MER1_type 7 187 -2 513 343 65 10 chr3 198587713 198587914 -19449244 + MIR SINE MIR 9 220 -42 523 283 134 38 chr3 198589306 198589752 -19447406 - L1MC4a LINE L1 -1638 6170 5682 848 261 220 34 chr3 198590079 198590887 -19446271 + L2 LINE L2 2361 3313 0 212 279 116 78 chr3 198591039 198591168 -19445990 + MIR3 SINE MIR 36 169 -39 350 294 210 35 chr3 198591180 198591547 -19445611 - L2 LINE L2 0 3272 2842 923 216 103 35 chr3 198591554 198591836 -19445322 + MER5C DNA MER1_type 3 303 -21 461 199 96 7 chr3 198591988 198592124 -19445034 - Charlie5 DNA MER1_type -101 2511 2364 260 189 0 133 chr3 198593555 198593645 -19443513 - MER116 DNA Mariner 0 80 3 980 210 11 5 chr3 198594109 198594295 -19442863 + MER5A DNA MER1_type 3 189 0 355 331 79 22 chr3 198594994 198595133 -19442025 + L2 LINE L2 3126 3272 0 554 299 16 22 chr3 198595374 198595558 -19441600 - MIR3 SINE MIR -10 198 16 306 214 67 0 chr3 198595890 198595979 -19441179 + L1ME4a LINE L1 5391 5485 -2323 305 296 65 47 chr3 198596008 198596455 -19440703 + L1ME4a LINE L1 5589 6045 -76 2311 123 36 19 chr3 198596828 198597242 -19439916 - L1MA8 LINE L1 -6 6285 5865 241 261 0 0 chr3 198597737 198597802 -19439356 - L2 LINE L2 -407 2907 2843 205 143 0 0 chr3 198597795 198597830 -19439328 + L2 LINE L2 3278 3312 -1 * 347 234 159 0 chr3 198597875 198597982 -19439176 - MER5A DNA MER1_type -65 124 1 532 312 56 35 chr3 198598475 198598706 -19438452 - MIR SINE MIR -6 256 21 311 257 109 47 chr3 198599253 198599529 -19437629 + L1ME4a LINE L1 5815 6107 -14 330 216 39 29 chr3 198599573 198599675 -19437483 + L1ME4a LINE L1 6014 6116 -5 1300 182 106 88 chr3 198599757 198600191 -19436967 + MSTB2 LTR MaLR 16 457 0 232 209 282 0 chr3 198600460 198600570 -19436588 + MIR SINE MIR 122 262 0 873 165 9 61 chr3 198601320 198601532 -19435626 + L1MC3 LINE L1 7585 7785 0 257 177 65 16 chr3 198601934 198601996 -19435162 + MIR SINE MIR 81 145 -117 225 209 0 0 chr3 198602075 198602142 -19435016 + (CCA)n Simple_repeat Simple_repeat 3 69 0 543 200 150 8 chr3 198603391 198603511 -19433647 + MER5A DNA MER1_type 1 137 -52 22 0 0 0 chr3 198604126 198604148 -19433010 + AT_rich Low_complexity Low_complexity 1 22 0 198 266 0 0 chr3 198604362 198604441 -19432717 + GA-rich Low_complexity Low_complexity 2 80 0 242 313 16 70 chr3 198605030 198605158 -19432000 - L2 LINE L2 -14 3258 3138 736 203 238 0 chr3 198605275 198605531 -19431627 - L1MB4 LINE L1 -2 6178 5862 577 297 52 10 chr3 198605535 198605727 -19431431 - MIR SINE MIR -49 213 14 2382 81 10 0 chr3 198605831 198606138 -19431020 + AluSg SINE Alu 1 310 0 662 248 54 39 chr3 198606949 198607207 -19429951 + MIR SINE MIR 1 262 0 487 266 147 5 chr3 198608458 198608642 -19428516 + MIR SINE MIR 47 256 -6 306 328 39 16 chr3 198608901 198609029 -19428129 - MIR SINE MIR -57 151 21 466 276 86 6 chr3 198609437 198609600 -19427558 + MIR SINE MIR 11 186 -76 397 322 88 9 chr3 198609751 198609978 -19427180 - L3 LINE CR1 -54 1523 1279 283 378 70 13 chr3 198610284 198610440 -19426718 + MIR SINE MIR 32 196 -66 423 240 0 40 chr3 198610744 198610844 -19426314 + MER5B DNA MER1_type 80 175 -3 35 24 0 0 chr3 198611377 198611419 -19425739 + AT_rich Low_complexity Low_complexity 1 42 0 473 247 158 21 chr3 198611422 198611612 -19425546 - MIR SINE MIR 0 262 47 2454 75 0 0 chr3 198611798 198612093 -19425065 - AluY SINE Alu -16 295 1 26 30 0 0 chr3 198612238 198612271 -19424887 + AT_rich Low_complexity Low_complexity 1 33 0 303 319 64 0 chr3 198613877 198613971 -19423187 - L2 LINE L2 -13 3259 3160 2015 55 0 25 chr3 198614341 198614616 -19422542 + L1PA5 LINE L1 5887 6154 0 776 296 22 82 chr3 198615621 198616073 -19421085 + MLT1J LTR MaLR 42 466 -45 6333 81 6 0 chr3 198616882 198617788 -19419370 + L1P LINE L1 4446 5356 -790 274 309 20 23 chr3 198618981 198619109 -19418049 + MIR SINE MIR 2 127 -81 214 339 0 0 chr3 198619140 198619196 -19417962 + L2 LINE L2 3237 3292 -21 24 32 0 0 chr3 198619427 198619458 -19417700 + AT_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chr3 198619804 198619824 -19417334 + (T)n Simple_repeat Simple_repeat 1 20 0 269 321 118 9 chr3 198620441 198620571 -19416587 - MIR SINE MIR -64 144 23 315 290 37 0 chr3 198621361 198621468 -19415690 + L1ME4a LINE L1 5798 5908 -213 240 163 0 0 chr3 198622352 198622395 -19414763 + (CA)n Simple_repeat Simple_repeat 1 43 0 476 260 39 19 chr3 198622706 198622860 -19414298 + MIR SINE MIR 106 262 0 195 277 31 31 chr3 198623181 198623246 -19413912 - MER5A DNA MER1_type 0 189 125 963 96 0 0 chr3 198623246 198623381 -19413777 + AluY SINE Alu 177 311 0 395 125 164 32 chr3 198623397 198623512 -19413646 - MER5A DNA MER1_type -47 139 9 277 362 95 19 chr3 198623649 198623859 -19413299 + L2 LINE L2 3046 3271 -1 194 292 89 40 chr3 198624595 198624797 -19412361 - L2 LINE L2 -353 2961 2750 327 49 0 0 chr3 198625513 198625554 -19411604 + (TG)n Simple_repeat Simple_repeat 2 42 0 203 235 20 20 chr3 198626924 198626975 -19410183 + MIR3 SINE MIR 151 201 -7 249 323 164 0 chr3 198627894 198628095 -19409063 + Charlie8 DNA MER1_type 4 237 -2180 1899 112 3 117 chr3 198628276 198628661 -19408497 - L1PA15 LINE L1 -3 6162 5822 1788 148 0 0 chr3 198628660 198629078 -19408080 + L1P4 LINE L1 5030 5447 -718 * 576 281 89 13 chr3 198629146 198629370 -19407788 - MIR SINE MIR -12 250 10 447 308 34 7 chr3 198629692 198629838 -19407320 - MIR SINE MIR -70 192 43 346 250 62 55 chr3 198631546 198631674 -19405484 + MIR SINE MIR 18 146 -62 711 214 60 22 chr3 198632099 198632281 -19404877 + MER5A DNA MER1_type 1 189 0 23 33 0 0 chr3 198632797 198632827 -19404331 + AT_rich Low_complexity Low_complexity 1 30 0 342 61 0 0 chr3 198633020 198633069 -19404089 + (TG)n Simple_repeat Simple_repeat 2 50 0 22 56 0 0 chr3 198633669 198633705 -19403453 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr3 198637843 198637865 -19399293 + AT_rich Low_complexity Low_complexity 1 22 0 1982 151 26 7 chr3 198639237 198639541 -19397617 + AluJo SINE Alu 1 310 -2 600 351 116 16 chr3 198640183 198640727 -19396431 - L2 LINE L2 -926 2388 1791 2195 105 0 38 chr3 198640747 198641060 -19396098 - AluSx SINE Alu -11 301 1 266 216 14 40 chr3 198643183 198643257 -19393901 - Charlie8 DNA MER1_type -1074 1343 1272 22 35 0 0 chr3 198644630 198644659 -19392499 + AT_rich Low_complexity Low_complexity 1 29 0 2088 100 64 0 chr3 198645082 198645363 -19391795 + AluSx SINE Alu 1 299 -13 487 335 71 15 chr3 198645473 198645742 -19391416 - L2 LINE L2 -421 2893 2610 186 260 0 0 chr3 198647442 198647515 -19389643 + (TA)n Simple_repeat Simple_repeat 2 74 0 22 0 0 0 chr3 198647627 198647649 -19389509 + AT_rich Low_complexity Low_complexity 1 22 0 867 246 52 0 chr3 198647719 198647910 -19389248 + Charlie1a DNA MER1_type 13 213 -1242 * 3657 197 45 32 chr3 198647907 198648907 -19388251 + Charlie1a DNA MER1_type 443 1455 0 232 275 115 55 chr3 198649145 198649327 -19387831 - MIR SINE MIR -50 212 20 203 311 0 16 chr3 198649482 198649543 -19387615 + MIR SINE MIR 175 234 -28 27 0 0 0 chr3 198650479 198650506 -19386652 + AT_rich Low_complexity Low_complexity 1 27 0 263 285 46 115 chr3 198650593 198650720 -19386438 - MIR3 SINE MIR -26 236 135 2724 23 0 0 chr3 198650720 198651024 -19386134 - AluY SINE Alu -7 304 1 263 285 46 115 chr3 198651024 198651149 -19386009 - MIR3 SINE MIR -127 135 3 853 262 49 9 chr3 198651305 198651530 -19385628 + MIR SINE MIR 19 252 -10 411 147 29 20 chr3 198651545 198651647 -19385511 + CT-rich Low_complexity Low_complexity 2 104 0 1967 111 44 4 chr3 198652440 198652758 -19384400 + AluSx SINE Alu 1 329 0 394 374 18 0 chr3 198654376 198654547 -19382611 + MIR3 SINE MIR 34 207 -1 1593 205 0 13 chr3 198654723 198655025 -19382133 - AluJb SINE Alu -14 298 1 550 319 25 20 chr3 198655056 198655260 -19381898 - MIR SINE MIR -7 255 51 458 268 7 72 chr3 198656583 198656721 -19380437 - MIR3 SINE MIR -23 185 57 186 250 77 0 chr3 198656784 198656836 -19380322 + L2 LINE L2 3210 3265 -7 196 250 58 0 chr3 198656952 198657004 -19380154 + L2 LINE L2 3258 3312 -1 432 82 0 0 chr3 198657183 198657244 -19379914 + (TATG)n Simple_repeat Simple_repeat 2 62 0 365 200 142 0 chr3 198657369 198657489 -19379669 - L1ME4a LINE L1 -11 6110 5974 335 266 8 8 chr3 198657511 198657639 -19379519 - L1ME4a LINE L1 -748 5430 5303 300 289 56 28 chr3 198657652 198657683 -19379475 - L1ME4a LINE L1 -185 5936 5907 1249 181 116 44 chr3 198657683 198657814 -19379344 + MER2 DNA MER2_type 1 121 -223 2169 122 0 13 chr3 198657814 198658126 -19379032 - AluSx SINE Alu -4 308 1 1249 181 116 44 chr3 198658126 198658314 -19378844 + MER2 DNA MER2_type 121 343 -1 300 289 56 28 chr3 198658314 198658424 -19378734 - L1ME4a LINE L1 -214 5907 5791 230 233 167 33 chr3 198658509 198658629 -19378529 + MLT1H LTR MaLR 406 541 -8 3073 64 15 2 chr3 198658938 198659331 -19377827 + MLT2A1 LTR ERVL 1 398 -46 308 47 0 0 chr3 198659339 198659382 -19377776 + MLT2A1 LTR ERVL 361 403 -41 535 116 5 68 chr3 198659404 198659594 -19377564 + (TA)n Simple_repeat Simple_repeat 1 178 0 45053 64 9 3 chr3 198659627 198665248 -19371910 + HERVL-A1-A1 LTR ERVL 1 5654 0 3184 52 5 15 chr3 198665248 198665656 -19371502 + MLT2A1 LTR ERVL 1 404 -40 25 0 0 0 chr3 198665656 198665681 -19371477 + AT_rich Low_complexity Low_complexity 1 25 0 345 111 0 0 chr3 198665694 198665748 -19371410 + MLT2A1 LTR ERVL 467 520 0 336 307 95 51 chr3 198666318 198666927 -19370231 - L1MC4a LINE L1 -1909 5899 5264 192 77 0 0 chr3 198667708 198667734 -19369424 + (A)n Simple_repeat Simple_repeat 1 26 0 24 0 0 0 chr3 198667807 198667831 -19369327 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 198667886 198667907 -19369251 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 198667992 198668015 -19369143 + AT_rich Low_complexity Low_complexity 1 23 0 216 0 0 0 chr3 198668910 198668934 -19368224 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 352 314 32 20 chr3 198668942 198669113 -19368045 + MER5A DNA MER1_type 6 188 -1 21 0 0 0 chr3 198669324 198669345 -19367813 + AT_rich Low_complexity Low_complexity 1 21 0 1479 189 29 45 chr3 198669578 198669770 -19367388 - AluJo SINE Alu -4 308 121 2316 81 0 3 chr3 198669770 198670065 -19367093 + AluY SINE Alu 1 294 -17 1479 189 29 45 chr3 198670065 198670185 -19366973 - AluJo SINE Alu -191 121 1 24 85 0 0 chr3 198670662 198670721 -19366437 + AT_rich Low_complexity Low_complexity 1 59 0 2554 86 6 3 chr3 198670893 198671244 -19365914 - THE1A LTR MaLR 0 355 4 11126 97 7 22 chr3 198671247 198672852 -19364306 - THE1A-int LTR MaLR 0 1580 1 2650 79 3 6 chr3 198672852 198673208 -19363950 - THE1A LTR MaLR 0 355 1 727 143 0 60 chr3 198673883 198674016 -19363142 - FLAM_A SINE Alu 0 142 18 297 213 303 0 chr3 198674022 198674177 -19362981 + L2 LINE L2 3100 3301 -12 2176 92 0 7 chr3 198674255 198674561 -19362597 - AluY SINE Alu 0 304 1 699 111 0 9 chr3 198674563 198674671 -19362487 - FLAM_C SINE Alu -2 141 35 782 213 56 0 chr3 198674671 198674831 -19362327 + MER20 DNA MER1_type 51 219 0 181 200 0 0 chr3 198675292 198675327 -19361831 + MIR SINE MIR 47 81 -181 186 300 78 11 chr3 198677925 198678015 -19359143 + MIR SINE MIR 166 261 -1 296 196 76 0 chr3 198678129 198678221 -19358937 + L1ME4a LINE L1 6018 6116 -5 1634 36 36 0 chr3 198678575 198678794 -19358364 + AluY SINE Alu 70 296 -15 243 308 31 0 chr3 198679578 198679643 -19357515 + MIR SINE MIR 6 72 -190 21 0 0 0 chr3 198679662 198679683 -19357475 + AT_rich Low_complexity Low_complexity 1 21 0 239 345 110 28 chr3 198679980 198680125 -19357033 - MIR3 SINE MIR -14 194 38 230 143 43 29 chr3 198680152 198680222 -19356936 + (TATAA)n Simple_repeat Simple_repeat 5 75 0 210 37 0 0 chr3 198680406 198680433 -19356725 + (CCA)n Simple_repeat Simple_repeat 3 29 0 36 53 0 0 chr3 198681928 198681985 -19355173 + AT_rich Low_complexity Low_complexity 1 57 0 21 36 0 0 chr3 198682531 198682559 -19354599 + AT_rich Low_complexity Low_complexity 1 28 0 297 238 0 0 chr3 198684306 198684377 -19352781 - MIR SINE MIR -86 122 52 430 352 57 11 chr3 198684805 198684981 -19352177 - MIR3 SINE MIR -6 202 19 553 344 81 26 chr3 198685208 198685589 -19351569 - L2 LINE L2 0 3272 2871 453 309 125 6 chr3 198685666 198685834 -19351324 - MER5A DNA MER1_type 0 189 2 215 224 129 98 chr3 198685884 198686139 -19351019 - L2 LINE L2 -838 2476 2214 213 336 180 8 chr3 198687913 198688035 -19349123 - L3 LINE CR1 -5 1572 1430 186 43 0 0 chr3 198688058 198688081 -19349077 + (CA)n Simple_repeat Simple_repeat 2 24 0 * 276 30 0 0 chr3 198688080 198688113 -19349045 + (GA)n Simple_repeat Simple_repeat 2 34 0 439 325 25 31 chr3 198688223 198688383 -19348775 + MER91A DNA MER1_type 8 166 -30 1970 91 3 35 chr3 198688565 198688656 -19348502 + AluY SINE Alu 30 122 -189 243 0 0 0 chr3 198688656 198688683 -19348475 + (TA)n Simple_repeat Simple_repeat 1 27 0 1970 91 3 35 chr3 198688683 198688878 -19348280 + AluY SINE Alu 122 307 -4 250 281 117 75 chr3 198689639 198689920 -19347238 - L2 LINE L2 0 3313 3021 441 306 38 29 chr3 198690160 198690369 -19346789 - MIR SINE MIR -44 218 8 195 42 0 0 chr3 198690438 198690462 -19346696 + (T)n Simple_repeat Simple_repeat 1 24 0 307 293 0 0 chr3 198690510 198690592 -19346566 + MIR3 SINE MIR 114 195 -13 453 323 83 48 chr3 198691181 198691422 -19345736 + LTR67 LTR ERVL 35 299 -258 198 0 0 0 chr3 198691422 198691444 -19345714 + (CAG)n Simple_repeat Simple_repeat 3 24 0 453 323 83 48 chr3 198691444 198691636 -19345522 + LTR67 LTR ERVL 299 483 -74 2436 229 59 61 chr3 198691636 198692561 -19344597 - L1MD3 LINE L1 0 8040 7132 494 273 14 28 chr3 198692915 198693058 -19344100 + MIR3 SINE MIR 37 177 -31 361 277 256 25 chr3 198693255 198693493 -19343665 + L3 LINE CR1 966 1258 -319 973 70 0 0 chr3 198693511 198693626 -19343532 - AluSq/x SINE Alu -188 125 11 28 79 0 0 chr3 198693686 198693749 -19343409 + AT_rich Low_complexity Low_complexity 1 63 0 421 227 197 1 chr3 198694010 198694139 -19343019 - MER5A DNA MER1_type -2 187 21 569 289 24 19 chr3 198694712 198694923 -19342235 - L3 LINE CR1 -229 1348 1137 1845 153 0 7 chr3 198696879 198697174 -19339984 + AluJb SINE Alu 1 293 -19 22 0 0 0 chr3 198699651 198699673 -19337485 + AT_rich Low_complexity Low_complexity 1 22 0 21 100 0 0 chr3 198701453 198701523 -19335635 + GC_rich Low_complexity Low_complexity 1 70 0 518 238 50 121 chr3 198701829 198702111 -19335047 + L2 LINE L2 3048 3309 -4 260 325 88 9 chr3 198702721 198702835 -19334323 + MIR SINE MIR 18 140 -68 266 239 149 34 chr3 198702940 198703099 -19334059 + MIR SINE MIR 20 190 -63 1349 191 30 4 chr3 198703552 198703861 -19333297 - MER93b LTR ERV1 0 373 80 631 215 152 6 chr3 198703961 198704119 -19333039 + MER5A DNA MER1_type 9 189 0 232 377 100 32 chr3 198705056 198705276 -19331882 + L2 LINE L2 2530 2764 -550 385 293 112 59 chr3 198705391 198705678 -19331480 + MLT1K LTR MaLR 79 380 -208 231 159 0 23 chr3 198705796 198705840 -19331318 + MLT1K LTR MaLR 546 588 0 1495 199 3 41 chr3 198706135 198706451 -19330707 - AluJo SINE Alu -8 304 1 7619 29 0 0 chr3 198706582 198708215 -19328943 + L1PA3 LINE L1 4558 6190 0 32 81 0 0 chr3 198708269 198708343 -19328815 + AT_rich Low_complexity Low_complexity 1 74 0 212 356 8 42 chr3 198708364 198708482 -19328676 - MIR3 SINE MIR -6 202 89 568 349 61 54 chr3 198709209 198709839 -19327319 + L2 LINE L2 2596 3232 -40 198 266 0 62 chr3 198710095 198710159 -19326999 - MIR SINE MIR -64 144 85 24 0 0 0 chr3 198710328 198710352 -19326806 + GC_rich Low_complexity Low_complexity 1 24 0 29 84 0 0 chr3 198710590 198710661 -19326497 + AT_rich Low_complexity Low_complexity 1 71 0 733 270 124 14 chr3 198710779 198711135 -19326023 + L1ME4a LINE L1 5491 5885 -236 251 188 0 43 chr3 198711161 198711230 -19325928 + (TATATG)n Simple_repeat Simple_repeat 2 67 0 4088 215 49 27 chr3 198715052 198715941 -19321217 - L1MC1 LINE L1 -485 6266 5398 1731 170 95 20 chr3 198715941 198716341 -19320817 + MSTB1 LTR MaLR 1 430 -2 4088 215 49 27 chr3 198716341 198717323 -19319835 - L1MC1 LINE L1 -1353 5398 4375 2389 214 21 21 chr3 198717351 198717993 -19319165 - L1MC1 LINE L1 -4851 1194 554 1844 154 154 16 chr3 198717993 198718369 -19318789 + MSTA LTR MaLR 1 428 0 9414 138 25 25 chr3 198718371 198719949 -19317209 + MSTA-int LTR MaLR 3 1580 0 1794 112 123 107 chr3 198719949 198720370 -19316788 + MSTA LTR MaLR 1 428 0 2389 214 21 21 chr3 198720370 198720464 -19316694 - L1MC1 LINE L1 -5372 673 581 295 284 15 0 chr3 198720470 198720537 -19316621 - MER2 DNA MER2_type 0 345 278 23 33 0 0 chr3 198720537 198720567 -19316591 + AT_rich Low_complexity Low_complexity 1 30 0 464 274 0 0 chr3 198720570 198720676 -19316482 + FLAM_A SINE Alu 1 106 -36 1041 184 0 51 chr3 198720691 198720908 -19316250 - MER2 DNA MER2_type -139 206 1 300 303 18 9 chr3 198720958 198721067 -19316091 - L1MC1 LINE L1 -5485 560 451 6771 136 10 7 chr3 198721198 198722552 -19314606 - L1MA2 LINE L1 -11 7712 6355 2104 79 0 28 chr3 198722559 198722850 -19314308 - AluY SINE Alu -1 310 28 1748 106 24 58 chr3 198722850 198723179 -19313979 - L1MA2 LINE L1 -4549 3016 2699 506 293 61 20 chr3 198723747 198723945 -19313213 + MIR SINE MIR 56 261 -1 4651 289 104 12 chr3 198723964 198724100 -19313058 + L2 LINE L2 1062 1184 -2129 1700 106 31 84 chr3 198724100 198724420 -19312738 + AluSx SINE Alu 8 310 -2 4651 289 104 12 chr3 198724420 198726279 -19310879 + L2 LINE L2 1184 3251 -62 346 211 19 0 chr3 198726280 198726384 -19310774 + (TA)n Simple_repeat Simple_repeat 2 107 0 237 355 83 18 chr3 198726749 198726918 -19310240 - MER5A DNA MER1_type 0 189 10 181 273 0 0 chr3 198728092 198728136 -19309022 - L2 LINE L2 -14 3299 3256 1407 231 34 12 chr3 198728748 198729187 -19307971 + L1ME3A LINE L1 5355 5864 -306 271 194 13 44 chr3 198729247 198729324 -19307834 + AluSp SINE Alu 136 189 -114 540 154 8 15 chr3 198729325 198729455 -19307703 + (TA)n Simple_repeat Simple_repeat 2 130 0 230 224 0 30 chr3 198729561 198729628 -19307530 + (TA)n Simple_repeat Simple_repeat 1 65 0 486 168 6 42 chr3 198729631 198729798 -19307360 + (CATATA)n Simple_repeat Simple_repeat 6 166 0 227 176 0 0 chr3 198729798 198729832 -19307326 - Alu SINE Alu -19 283 250 263 203 13 0 chr3 198729837 198729916 -19307242 + (TA)n Simple_repeat Simple_repeat 1 80 0 460 265 50 55 chr3 198729955 198730155 -19307003 + L1ME3A LINE L1 5944 6142 -28 274 192 0 14 chr3 198730222 198730295 -19306863 + L1ME4a LINE L1 6048 6119 -2 407 157 62 22 chr3 198730317 198730516 -19306642 + AluJb SINE Alu 1 295 -17 2349 47 7 0 chr3 198730516 198730813 -19306345 + L1PA4 LINE L1 5851 6149 -6 407 157 62 22 chr3 198730813 198730831 -19306327 + AluJb SINE Alu 295 311 -1 220 333 0 11 chr3 198730987 198731074 -19306084 + MER5B DNA MER1_type 90 175 -3 22 0 0 0 chr3 198731955 198731977 -19305181 + AT_rich Low_complexity Low_complexity 1 22 0 277 355 12 41 chr3 198732318 198732487 -19304671 - MIR3 SINE MIR -30 178 15 21 0 0 0 chr3 198732560 198732581 -19304577 + AT_rich Low_complexity Low_complexity 1 21 0 253 335 26 7 chr3 198733514 198733669 -19303489 + HAL1b LINE L1 327 484 -864 249 33 0 0 chr3 198734532 198734562 -19302596 + (A)n Simple_repeat Simple_repeat 1 30 0 25 0 0 0 chr3 198735216 198735241 -19301917 + AT_rich Low_complexity Low_complexity 1 25 0 436 277 19 94 chr3 198735298 198735457 -19301701 + MIR3 SINE MIR 44 190 -18 416 273 62 62 chr3 198736429 198736623 -19300535 + MIR SINE MIR 2 195 -67 2204 103 10 0 chr3 198737017 198737308 -19299850 + AluSc SINE Alu 1 294 -15 459 361 42 14 chr3 198737477 198737690 -19299468 - MIR SINE MIR -19 243 25 393 307 42 24 chr3 198738730 198738896 -19298262 - MIR SINE MIR -74 188 20 410 338 121 4 chr3 198738903 198739134 -19298024 + MIR SINE MIR 2 259 -3 582 265 50 64 chr3 198740832 198741051 -19296107 + MIR SINE MIR 12 227 -35 387 0 0 0 chr3 198741850 198741893 -19295265 + (CA)n Simple_repeat Simple_repeat 2 44 0 505 303 166 11 chr3 198742267 198742808 -19294350 - L1MC4a LINE L1 -1892 6711 6087 1976 139 0 7 chr3 198742838 198743125 -19294033 - AluSx SINE Alu -15 297 13 190 225 67 56 chr3 198743154 198743243 -19293915 - MIR SINE MIR -31 231 142 721 279 48 36 chr3 198743243 198743576 -19293582 - L1MC4a LINE L1 -2495 4446 4110 2960 119 0 8 chr3 198743588 198744057 -19293101 - L1PA5 LINE L1 -4 6150 5686 3675 54 6 4 chr3 198744261 198744975 -19292183 - L1PA5 LINE L1 -438 5716 4998 2806 231 38 58 chr3 198744958 198745811 -19291347 - L1MC4a LINE L1 -2821 4120 3295 * 2226 116 0 3 chr3 198745811 198746114 -19291044 - AluSx SINE Alu -10 302 1 2806 231 38 58 chr3 198746114 198746424 -19290734 - L1MC4a LINE L1 -3646 3295 2980 773 174 79 0 chr3 198746435 198746625 -19290533 - L1MA8 LINE L1 0 6291 6087 2132 259 78 35 chr3 198746625 198746803 -19290355 - L1MCc LINE L1 -4094 3028 2859 2529 116 5 13 chr3 198746803 198747181 -19289977 + THE1C LTR MaLR 1 375 0 2132 259 78 35 chr3 198747181 198748724 -19288434 - L1MCc LINE L1 -4263 2859 1124 13279 148 27 32 chr3 198748732 198751103 -19286055 + Tigger2 DNA MER2_type 4 2361 -357 1600 154 124 48 chr3 198751503 198751971 -19285187 - LTR10A LTR ERV1 -61 548 1 500 192 0 30 chr3 198752594 198752693 -19284465 + MER94 DNA DNA 1 96 -38 208 255 0 0 chr3 198752794 198752841 -19284317 + A-rich Low_complexity Low_complexity 5 51 0 193 333 0 0 chr3 198753194 198753251 -19283907 + MIR SINE MIR 204 260 -2 823 112 91 13 chr3 198753252 198753405 -19283753 + LTR7 LTR ERV1 1 213 -237 1186 159 36 110 chr3 198753958 198754267 -19282891 - MLT1C LTR MaLR -181 286 1 327 295 46 24 chr3 198754347 198754539 -19282619 + L1MDa LINE L1 1801 2092 -809 22 0 0 0 chr3 198754637 198754659 -19282499 + AT_rich Low_complexity Low_complexity 1 22 0 277 319 76 40 chr3 198754955 198755325 -19281833 + L1ME LINE L1 5291 5673 -448 489 17 0 0 chr3 198755987 198756045 -19281113 + (TG)n Simple_repeat Simple_repeat 2 59 0 189 0 0 0 chr3 198756578 198756599 -19280559 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 448 339 75 62 chr3 198757364 198758000 -19279158 + L2 LINE L2 2630 3272 0 222 171 0 0 chr3 198758088 198758129 -19279029 + (TA)n Simple_repeat Simple_repeat 2 42 0 420 330 103 26 chr3 198758470 198758703 -19278455 + MIR SINE MIR 11 261 -1 337 326 35 21 chr3 198758704 198758845 -19278313 - MIR3 SINE MIR -45 163 21 498 201 110 138 chr3 198760155 198760474 -19276684 + MLT1K LTR MaLR 278 587 -1 403 288 65 18 chr3 198761611 198761781 -19275377 - MER5B DNA MER1_type 0 178 1 1115 258 48 45 chr3 198762096 198762514 -19274644 - L1MEc LINE L1 -5941 455 37 234 283 104 0 chr3 198762515 198762621 -19274537 - L1MDa LINE L1 -3984 2556 2440 243 0 0 0 chr3 198763558 198763585 -19273573 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 392 302 51 47 chr3 198764062 198764277 -19272881 + MIR SINE MIR 33 248 -14 190 211 0 0 chr3 198764476 198764514 -19272644 - L2 LINE L2 0 3313 3276 35 54 0 0 chr3 198764515 198764571 -19272587 + AT_rich Low_complexity Low_complexity 1 56 0 5400 207 32 10 chr3 198765404 198766484 -19270674 + L1M1 LINE L1 338 1441 -6124 319 224 15 0 chr3 198767124 198767191 -19269967 - L2 LINE L2 0 3313 3246 181 298 0 18 chr3 198767254 198767311 -19269847 - MIR SINE MIR -157 105 50 557 210 28 7 chr3 198767483 198767626 -19269532 + L1MB8 LINE L1 6031 6176 -2 1520 252 25 38 chr3 198767642 198768115 -19269043 + L1MCb LINE L1 1 467 -5578 340 206 21 41 chr3 198768115 198768212 -19268946 + L1M1 LINE L1 16 110 -7455 559 228 95 47 chr3 198768317 198768528 -19268630 + MLT1A2 LTR MaLR 176 374 0 7480 220 53 31 chr3 198768528 198769497 -19267661 + MLT1A1-int LTR MaLR 1 1024 -711 2248 146 22 0 chr3 198769497 198769853 -19267305 + THE1B LTR MaLR 1 364 0 7480 220 53 31 chr3 198769853 198770581 -19266577 + MLT1A1-int LTR MaLR 1024 1735 0 1238 194 80 49 chr3 198770585 198770935 -19266223 + MLT1A1 LTR MaLR 5 365 0 909 226 92 17 chr3 198770935 198771315 -19265843 + L1MCb LINE L1 2052 2494 -4070 817 184 45 0 chr3 198771330 198771509 -19265649 - L1 LINE L1 -3090 4475 4289 333 68 0 0 chr3 198771519 198771563 -19265595 + (TA)n Simple_repeat Simple_repeat 2 45 0 6206 123 27 71 chr3 198771577 198772656 -19264502 - L1 LINE L1 -3690 3875 2874 5737 52 3 1 chr3 198772656 198773367 -19263791 + L1PA7 LINE L1 5438 6154 0 6206 123 27 71 chr3 198773367 198773725 -19263433 - L1 LINE L1 -4691 2874 2502 5788 120 1 0 chr3 198773726 198775138 -19262020 - L1PA14 LINE L1 -5 6156 4732 5906 178 11 10 chr3 198775140 198775390 -19261768 - L1PA14 LINE L1 -1344 4802 4554 1998 109 50 0 chr3 198775390 198775673 -19261485 - AluSg SINE Alu -13 297 1 5906 178 11 10 chr3 198775673 198776560 -19260598 - L1PA14 LINE L1 -1592 4554 3663 * 10479 192 35 49 chr3 198776554 198778743 -19258415 - L1 LINE L1 -5053 2512 607 537 16 0 0 chr3 198778743 198778805 -19258353 + (CA)n Simple_repeat Simple_repeat 2 63 0 10479 192 35 49 chr3 198778805 198779395 -19257763 - L1 LINE L1 -6958 607 10 353 211 13 0 chr3 198779418 198779494 -19257664 + MER116 DNA Mariner 1 77 -3 266 333 73 57 chr3 198780209 198780401 -19256757 + L2 LINE L2 2564 2758 -556 258 220 0 0 chr3 198780462 198780521 -19256637 + (CA)n Simple_repeat Simple_repeat 2 60 0 257 267 0 0 chr3 198780522 198780582 -19256576 + (TA)n Simple_repeat Simple_repeat 2 61 0 216 354 96 47 chr3 198780723 198780980 -19256178 + L2 LINE L2 2772 3036 -236 22 35 0 0 chr3 198782485 198782514 -19254644 + AT_rich Low_complexity Low_complexity 1 29 0 661 329 57 62 chr3 198782572 198782961 -19254197 + MLT1K LTR MaLR 13 399 -189 1505 233 20 17 chr3 198782963 198783332 -19253826 - MLT1A1 LTR MaLR 0 365 1 244 243 43 0 chr3 198783398 198783468 -19253690 + MLT1K LTR MaLR 485 557 -31 189 237 0 0 chr3 198783608 198783667 -19253491 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 25 31 0 0 chr3 198784078 198784110 -19253048 + AT_rich Low_complexity Low_complexity 1 32 0 544 256 48 70 chr3 198784638 198784868 -19252290 - MIR SINE MIR -14 248 24 284 282 110 31 chr3 198785468 198785759 -19251399 + L1M2 LINE L1 4706 5019 -1127 4866 238 23 29 chr3 198785765 198787707 -19249451 + L1PA11 LINE L1 1 2980 -4594 8915 138 17 0 chr3 198787707 198790030 -19247128 + L1PA11 LINE L1 5287 7602 -10 860 274 69 47 chr3 198790087 198790708 -19246450 + L1M2 LINE L1 5075 5718 -582 24 32 0 0 chr3 198790924 198790955 -19246203 + AT_rich Low_complexity Low_complexity 1 31 0 273 180 33 16 chr3 198790955 198791016 -19246142 + L1MC5 LINE L1 5855 5916 -1892 418 268 49 103 chr3 198792136 198792360 -19244798 + LTR33A LTR ERVL 9 220 -303 254 260 83 0 chr3 198792698 198792794 -19244364 + LTR33A LTR ERVL 420 523 0 934 198 10 53 chr3 198792988 198793258 -19243900 + L1MC5 LINE L1 6994 7250 -728 515 246 162 34 chr3 198793410 198793817 -19243341 + L1MC5 LINE L1 7318 7776 -185 209 374 98 32 chr3 198794326 198794449 -19242709 + L2 LINE L2 3123 3253 -19 222 37 0 0 chr3 198794609 198794636 -19242522 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 2629 23 7 0 chr3 198794812 198795122 -19242036 - L1PA2 LINE L1 -1 6154 5843 270 0 0 0 chr3 198795123 198795153 -19242005 + (A)n Simple_repeat Simple_repeat 1 30 0 4766 133 65 88 chr3 198845154 198846005 -19191153 - L1MCa LINE L1 -5054 1372 502 1893 124 7 10 chr3 198846005 198846312 -19190846 + L1MA4A LINE L1 5995 6300 -3 1660 166 34 20 chr3 198846316 198846612 -19190546 + AluJb SINE Alu 1 300 -12 4766 133 65 88 chr3 198846612 198846932 -19190226 - L1MCa LINE L1 -5927 499 224 2355 99 0 0 chr3 198848270 198848574 -19188584 + AluSx SINE Alu 1 304 -8 216 67 0 0 chr3 198848587 198848617 -19188541 + (A)n Simple_repeat Simple_repeat 1 30 0 426 309 127 38 chr3 198848619 198848988 -19188170 + L1M4 LINE L1 4693 5094 -1052 1824 144 0 33 chr3 198849185 198849491 -19187667 - AluJb SINE Alu -16 296 1 513 160 20 0 chr3 198849493 198849593 -19187565 - L1MC/D LINE L1 -667 5692 5591 986 213 138 13 chr3 198849593 198849898 -19187260 + MER4B LTR ERV1 1 343 -267 253 326 92 20 chr3 198851038 198851136 -19186022 - L2 LINE L2 -27 3286 3182 256 167 76 15 chr3 198851258 198851324 -19185834 - MER5A DNA MER1_type -90 99 30 1510 218 56 76 chr3 198851331 198852066 -19185092 - MER61E LTR ERV1 -4 775 1 2397 59 0 0 chr3 198852184 198852470 -19184688 - AluY SINE Alu -23 288 3 336 259 27 0 chr3 198852526 198852638 -19184520 - MER103 DNA DNA -44 122 8 21 36 0 0 chr3 198852900 198852928 -19184230 + AT_rich Low_complexity Low_complexity 1 28 0 1282 193 53 54 chr3 198853551 198854149 -19183009 + LTR48 LTR ERV1 1 787 0 508 135 31 21 chr3 198854209 198854305 -19182853 + MER4A LTR ERV1 1 97 -567 * 1905 145 30 12 chr3 198854304 198854646 -19182512 + MER4A LTR ERV1 259 664 0 3477 130 30 11 chr3 198854737 198854863 -19182295 - MER34C LTR ERV1 -1 584 462 3290 148 9 0 chr3 198854863 198855389 -19181769 - LTR26B LTR ERV1 0 531 1 3477 130 30 11 chr3 198855389 198855830 -19181328 - MER34C LTR ERV1 -123 462 6 1901 119 0 0 chr3 198856268 198856521 -19180637 - AluSx SINE Alu -6 306 54 314 342 155 0 chr3 198857461 198857648 -19179510 - MIR SINE MIR -26 236 21 2605 157 17 5 chr3 198857747 198858168 -19178990 - MSTB LTR MaLR 0 426 1 324 245 0 43 chr3 198858874 198858975 -19178183 - MLT1L LTR MaLR -109 480 316 524 190 36 41 chr3 198859102 198859353 -19177805 - MLT1G LTR MaLR 0 555 198 386 276 30 117 chr3 198859461 198859725 -19177433 - MLT1-int LTR MaLR -24 1347 1107 501 306 0 0 chr3 198859761 198859882 -19177276 - MLT1G LTR MaLR -456 134 14 890 153 0 0 chr3 198859894 198860025 -19177133 - MSTB LTR MaLR -295 131 1 347 302 16 116 chr3 198860398 198860640 -19176518 - L2 LINE L2 -217 3055 2838 231 188 0 0 chr3 198861097 198861145 -19176013 + CT-rich Low_complexity Low_complexity 5 52 0 293 115 0 19 chr3 198861147 198861199 -19175959 + (TTCC)n Simple_repeat Simple_repeat 3 53 0 271 148 37 0 chr3 198862239 198862293 -19174865 - MLT1I LTR MaLR -19 390 335 * 700 294 107 3 chr3 198862291 198862600 -19174558 - MER20B DNA MER1_type -191 592 252 2813 170 39 57 chr3 198862753 198863387 -19173771 + L1MB3 LINE L1 5560 6182 -1 299 282 59 0 chr3 198863408 198863493 -19173665 - MER20B DNA MER1_type -693 90 1 188 0 74 0 chr3 198863497 198863524 -19173634 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 912 251 34 66 chr3 198863655 198863820 -19173338 + L1MCc LINE L1 17 186 -6237 2050 115 0 77 chr3 198863820 198864158 -19173000 - AluSx SINE Alu 0 312 1 912 251 34 66 chr3 198864158 198864342 -19172816 + L1MCc LINE L1 186 355 -6068 303 285 7 49 chr3 198864803 198864947 -19172211 - HAL1b LINE L1 -629 719 582 775 264 91 0 chr3 198865482 198865713 -19171445 + MIR SINE MIR 6 257 -5 363 305 89 28 chr3 198866544 198866868 -19170290 + L1M4 LINE L1 2915 3232 -2914 2185 109 3 0 chr3 198867266 198867559 -19169599 - AluSp SINE Alu -19 294 1 30 27 0 0 chr3 198868484 198868521 -19168637 + AT_rich Low_complexity Low_complexity 1 37 0 4010 108 71 3 chr3 198868522 198869180 -19167978 - L1MA3 LINE L1 -1 6304 5602 1124 285 52 43 chr3 198869714 198870542 -19166616 + HAL1 LINE L1 824 1658 -849 335 291 80 65 chr3 198871299 198871574 -19165584 + HAL1 LINE L1 2225 2503 -4 28 0 0 0 chr3 198871796 198871824 -19165334 + AT_rich Low_complexity Low_complexity 1 28 0 508 274 52 0 chr3 198871828 198871963 -19165195 - MIR SINE MIR -32 230 89 467 252 25 25 chr3 198872072 198872191 -19164967 + MER63A DNA MER1_type 87 205 -5 218 129 0 0 chr3 198872192 198872223 -19164935 - MIR SINE MIR -201 61 31 1950 126 29 7 chr3 198872514 198872823 -19164335 + AluSp SINE Alu 2 316 0 276 274 81 39 chr3 198873556 198873828 -19163330 + L1M4 LINE L1 3663 3945 -2201 456 329 92 63 chr3 198874082 198874193 -19162965 - L2 LINE L2 -429 2885 2779 2249 108 3 3 chr3 198874193 198874500 -19162658 - AluSg SINE Alu -3 307 1 456 329 92 63 chr3 198874500 198874799 -19162359 - L2 LINE L2 -535 2779 2463 10588 168 17 12 chr3 198874858 198878124 -19159034 - L1MA5A LINE L1 -2 6937 3647 16002 198 34 54 chr3 198878124 198879038 -19158120 - L1PA16 LINE L1 -9 6860 5929 822 153 0 0 chr3 198879038 198879169 -19157989 - FLAM_C SINE Alu -2 131 1 16002 198 34 54 chr3 198879169 198880257 -19156901 - L1PA16 LINE L1 -940 5929 4821 791 11 0 0 chr3 198880257 198880348 -19156810 - 5S rRNA rRNA -30 91 1 16002 198 34 54 chr3 198880348 198885194 -19151964 - L1PA16 LINE L1 -2048 4821 1 1774 206 24 0 chr3 198885213 198885635 -19151523 - L1MA5A LINE L1 -3104 3684 3253 3598 71 2 6 chr3 198885651 198886129 -19151029 + L1PA5 LINE L1 5679 6154 0 230 0 0 32 chr3 198886148 198886179 -19150979 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 5009 244 42 11 chr3 198886180 198888053 -19149105 - L1MA5A LINE L1 -4782 2007 2 240 308 46 29 chr3 198888056 198888337 -19148821 + L1P LINE L1 3983 4269 -1877 7106 16 0 4 chr3 198888441 198889260 -19147898 + L1PA3 LINE L1 5339 6154 -1 34 24 0 0 chr3 198889350 198889391 -19147767 + AT_rich Low_complexity Low_complexity 1 41 0 316 320 45 45 chr3 198889531 198889687 -19147471 + L1 LINE L1 4673 4828 -1318 545 233 31 78 chr3 198889760 198889953 -19147205 + HAL1 LINE L1 12 195 -2312 1229 276 73 55 chr3 198889993 198890837 -19146321 + HAL1 LINE L1 497 1356 -1151 379 288 84 58 chr3 198891336 198891527 -19145631 - HERV16 LTR ERVL -4800 196 1 1146 292 121 5 chr3 198891535 198891939 -19145219 - LTR16B LTR ERVL -13 451 1 767 347 85 36 chr3 198892127 198892845 -19144313 - L2 LINE L2 -337 2977 2225 408 291 25 31 chr3 198892926 198893122 -19144036 - L1ME LINE L1 -305 5816 5622 2140 129 0 3 chr3 198893231 198893540 -19143618 - AluSg SINE Alu -2 308 1 472 219 119 16 chr3 198894004 198894144 -19143014 - MLT1G1 LTR MaLR 0 590 395 1108 137 41 64 chr3 198894144 198894363 -19142795 - MER20 DNA MER1_type 0 219 6 922 278 131 29 chr3 198894351 198894733 -19142425 - MLT1G1 LTR MaLR -174 421 1 * 222 227 61 30 chr3 198894776 198894842 -19142316 + MIR SINE MIR 124 191 -71 379 323 81 53 chr3 198896069 198896391 -19140767 + L1ME4a LINE L1 5608 5938 -183 26 64 0 0 chr3 198896431 198896478 -19140680 + AT_rich Low_complexity Low_complexity 1 47 0 277 335 21 5 chr3 198896707 198896901 -19140257 - L1ME LINE L1 -297 5824 5628 352 342 143 13 chr3 198896905 198896975 -19140183 - L1ME LINE L1 -2220 5588 5528 2174 82 0 0 chr3 198896975 198897245 -19139913 + AluSx SINE Alu 37 306 -6 352 342 143 13 chr3 198897245 198897405 -19139753 - L1ME LINE L1 -2280 5528 5328 587 317 23 18 chr3 198898325 198898546 -19138612 + MIR SINE MIR 28 249 -13 296 161 16 0 chr3 198898955 198899017 -19138141 + GA-rich Low_complexity Low_complexity 4 66 0 257 289 311 0 chr3 198899590 198899725 -19137433 - MIR SINE MIR -40 222 46 654 162 7 14 chr3 198899989 198900137 -19137021 + CT-rich Low_complexity Low_complexity 2 148 0 281 293 61 24 chr3 198901547 198901711 -19135447 + Charlie8 DNA MER1_type 7 176 -2241 2250 97 3 16 chr3 198902825 198903133 -19134025 - AluSg SINE Alu -6 304 1 1092 178 136 74 chr3 198903796 198904229 -19132929 + LTR37B LTR ERV1 1 460 -8 510 285 62 7 chr3 198904642 198904786 -19132372 - MIR SINE MIR -109 153 2 189 403 56 0 chr3 198905432 198905504 -19131654 - L2 LINE L2 -47 3225 3150 2144 142 0 0 chr3 198905585 198905888 -19131270 + AluSx SINE Alu 1 303 -9 25 0 0 0 chr3 198906009 198906034 -19131124 + AT_rich Low_complexity Low_complexity 1 25 0 1096 272 185 18 chr3 198906456 198906948 -19130210 - MLT1K LTR MaLR -5 583 10 2136 107 10 0 chr3 198908043 198908334 -19128824 - AluSp SINE Alu -19 294 1 2407 72 10 0 chr3 198908567 198908872 -19128286 - AluY SINE Alu -3 308 1 312 284 64 0 chr3 198909004 198909113 -19128045 + MIR SINE MIR 47 162 -100 238 277 178 0 chr3 198909247 198909348 -19127810 + L2 LINE L2 3191 3309 -4 1650 219 61 11 chr3 198909384 198909828 -19127330 + MLT1C LTR MaLR 2 467 0 28 61 0 0 chr3 198911429 198911478 -19125680 + AT_rich Low_complexity Low_complexity 1 49 0 21 26 0 26 chr3 198911541 198911558 -19125600 + AT_rich Low_complexity Low_complexity 1 17 -21 2214 80 3 37 chr3 198911558 198911857 -19125301 - AluY SINE Alu -22 289 1 21 26 0 26 chr3 198911857 198911878 -19125280 + AT_rich Low_complexity Low_complexity 17 38 0 283 282 0 26 chr3 198912533 198912611 -19124547 - MIR SINE MIR -116 146 71 433 258 197 0 chr3 198912730 198912862 -19124296 - MER5A DNA MER1_type 0 189 32 370 309 47 66 chr3 198913330 198913526 -19123632 + MIR SINE MIR 3 206 -56 234 352 153 19 chr3 198914493 198914871 -19122287 + L2 LINE L2 943 1371 -1943 1890 193 23 13 chr3 198915006 198915390 -19121768 + MLT1B LTR MaLR 1 388 -2 275 237 134 10 chr3 198915481 198915578 -19121580 + L2 LINE L2 3112 3220 -93 396 0 0 0 chr3 198915634 198915678 -19121480 + (TG)n Simple_repeat Simple_repeat 2 45 0 1637 118 0 78 chr3 198915678 198915948 -19121210 - AluSx SINE Alu -28 284 36 269 320 0 0 chr3 198916121 198916199 -19120959 + L2 LINE L2 3235 3312 -1 1989 205 63 39 chr3 198916484 198916943 -19120215 + MLT2B1 LTR ERVL 51 520 0 570 171 143 11 chr3 198917207 198917382 -19119776 - L1MC5 LINE L1 -31 7930 7733 419 215 81 0 chr3 198917597 198917698 -19119460 + MIR SINE MIR 57 167 -41 515 338 25 3 chr3 198919612 198919791 -19117367 + MIR SINE MIR 22 206 -56 222 358 0 0 chr3 198919833 198919900 -19117258 + L2 LINE L2 3242 3308 -5 907 176 0 7 chr3 198920473 198920626 -19116532 - LTR32 LTR ERVL 0 471 320 2131 158 21 0 chr3 198920718 198921046 -19116112 - LTR32 LTR ERVL -122 349 15 15125 160 34 23 chr3 198921101 198922720 -19114438 + L1M1 LINE L1 15 1615 -6108 2276 135 5 16 chr3 198922720 198923099 -19114059 + THE1C LTR MaLR 1 375 0 15125 160 34 23 chr3 198923099 198923549 -19113609 + L1M1 LINE L1 1615 2059 -5664 2313 29 22 0 chr3 198923549 198923825 -19113333 + L1PA4 LINE L1 5866 6147 -8 15125 160 34 23 chr3 198923825 198924135 -19113023 + L1M1 LINE L1 2059 2364 -5359 363 44 0 0 chr3 198924135 198924180 -19112978 + (GA)n Simple_repeat Simple_repeat 2 46 0 15125 160 34 23 chr3 198924180 198924549 -19112609 + L1M1 LINE L1 2364 2727 -4996 2840 81 0 16 chr3 198924549 198924930 -19112228 + THE1C LTR MaLR 1 375 0 15125 160 34 23 chr3 198924930 198928801 -19108357 + L1M1 LINE L1 2727 7028 -695 5322 97 15 5 chr3 198928801 198929584 -19107574 + L1MA3 LINE L1 5511 6305 0 1020 234 108 3 chr3 198929592 198929917 -19107241 + MER113 DNA MER1_type? 98 456 -65 345 337 92 0 chr3 198930272 198930435 -19106723 + MIR SINE MIR 30 207 -55 1963 173 45 74 chr3 198933145 198933630 -19103528 - MLT1D LTR MaLR -34 471 1 534 267 30 18 chr3 198934491 198934656 -19102502 - MER69A DNA AcHobo -3 174 8 367 301 55 7 chr3 198935056 198935202 -19101956 + L3 LINE CR1 1424 1576 -1 370 234 39 0 chr3 198935461 198935538 -19101620 + L1MC1 LINE L1 21 100 -6326 312 224 40 0 chr3 198935535 198935611 -19101547 - L1MCa LINE L1 -6266 160 82 * 1721 163 161 12 chr3 198935611 198936034 -19101124 + L1MC1 LINE L1 1910 2395 -4031 7533 231 43 35 chr3 198936043 198936578 -19100580 + L1MC1 LINE L1 3221 3750 -2676 1502 218 14 16 chr3 198936578 198936941 -19100217 + MLT1A1 LTR MaLR 1 362 -3 7533 231 43 35 chr3 198936941 198938740 -19098418 + L1MC1 LINE L1 3750 5574 -852 3856 194 23 6 chr3 198938744 198939576 -19097582 - L1 LINE L1 -904 5242 4397 1541 220 42 24 chr3 198939584 198939966 -19097192 - L1 LINE L1 -2016 4130 3742 5230 148 25 12 chr3 198939969 198940884 -19096274 + L1MC1 LINE L1 5684 6610 -3 204 40 0 0 chr3 198940884 198940909 -19096249 + (CA)n Simple_repeat Simple_repeat 2 26 0 368 279 123 0 chr3 198941507 198941629 -19095529 - MIR SINE MIR -16 246 110 717 232 123 28 chr3 198941654 198941865 -19095293 - MIR SINE MIR -27 235 5 185 289 186 31 chr3 198942082 198942179 -19094979 + L2 LINE L2 3156 3267 -5 402 277 122 14 chr3 198942737 198942885 -19094273 + MIR SINE MIR 25 188 -74 275 273 230 43 chr3 198943288 198943449 -19093709 - L2 LINE L2 -11 3261 3071 2569 136 9 27 chr3 198945915 198946357 -19090801 + MER61C LTR ERV1 1 434 0 875 194 43 56 chr3 198946669 198946901 -19090257 + MER61C-int LTR ERV1 226 454 -4763 2620 116 14 19 chr3 198946920 198947342 -19089816 + MER61C-int LTR ERV1 422 841 -4376 4436 124 10 3 chr3 198947342 198948019 -19089139 + MER61C-int LTR ERV1 959 1640 -3577 * 10125 109 22 14 chr3 198947998 198949586 -19087572 + MER61C-int LTR ERV1 1972 3572 -1645 * 11224 112 38 24 chr3 198949580 198949821 -19087337 + MER61C-int LTR ERV1 3446 3682 -1535 2071 105 17 17 chr3 198949821 198950116 -19087042 + AluSp SINE Alu 1 295 -18 11224 112 38 24 chr3 198950116 198951188 -19085970 + MER61C-int LTR ERV1 3682 4738 -479 2167 108 73 14 chr3 198951188 198951532 -19085626 - THE1B LTR MaLR 0 364 1 11492 92 13 7 chr3 198951532 198953101 -19084057 - THE1B-int LTR MaLR 0 1580 2 2119 101 81 35 chr3 198953104 198953450 -19083708 - THE1B LTR MaLR -2 362 1 11224 112 38 24 chr3 198953450 198953878 -19083280 + MER61C-int LTR ERV1 4739 5217 0 2541 158 12 9 chr3 198953878 198954308 -19082850 + MER61C LTR ERV1 1 431 -3 325 288 50 0 chr3 198954358 198954438 -19082720 + MER5A DNA MER1_type 18 101 -88 279 229 90 8 chr3 198954508 198954630 -19082528 - Charlie7 DNA MER1_type -1 2611 2480 2030 138 3 10 chr3 198954639 198954944 -19082214 + AluSx SINE Alu 1 303 -9 264 271 16 70 chr3 198955414 198955543 -19081615 + MIR3 SINE MIR 36 157 -51 5835 33 1 0 chr3 198955642 198956340 -19080818 + L1PA4 LINE L1 5454 6152 -3 243 211 77 90 chr3 198957139 198957285 -19079873 + MIR SINE MIR 40 179 -60 * 460 322 35 10 chr3 198957251 198957453 -19079705 - MIR SINE MIR 0 262 56 207 0 0 0 chr3 198958799 198958822 -19078336 + (TTA)n Simple_repeat Simple_repeat 2 24 0 783 302 62 62 chr3 198959262 198959679 -19077479 - MLT1J LTR MaLR -94 417 1 2015 156 8 11 chr3 198959837 198960208 -19076950 - L1PB1 LINE L1 0 6151 5782 455 66 7 66 chr3 198960224 198960361 -19076797 + (TA)n Simple_repeat Simple_repeat 2 130 0 4824 167 14 7 chr3 198960364 198961883 -19075275 - L1PB1 LINE L1 -361 5790 4265 4119 171 20 64 chr3 198962113 198963077 -19074081 - L1MB2 LINE L1 -3 6168 5250 2147 116 13 10 chr3 198963077 198963379 -19073779 - AluSp SINE Alu -4 309 7 4119 171 20 64 chr3 198963379 198963456 -19073702 - L1MB2 LINE L1 -921 5250 5171 1502 218 50 48 chr3 198964137 198964595 -19072563 - LTR40b LTR ERVL 0 462 4 896 202 5 32 chr3 198965411 198965599 -19071559 - MER3 DNA MER1_type 0 209 27 301 244 0 0 chr3 198965725 198965807 -19071351 + (TA)n Simple_repeat Simple_repeat 2 83 0 2319 109 0 0 chr3 198966456 198966768 -19070390 - AluSq SINE Alu -1 312 1 376 248 92 75 chr3 198967387 198967682 -19069476 - L1ME4a LINE L1 -89 6032 5733 279 348 86 45 chr3 198968638 198968859 -19068299 - L2 LINE L2 -76 3196 2967 261 204 0 0 chr3 198969038 198969087 -19068071 + MER5B DNA MER1_type 1 49 -129 264 49 0 0 chr3 198969110 198969151 -19068007 - L1MA3 LINE L1 0 6305 6265 332 289 41 33 chr3 198969167 198969288 -19067870 + MIR3 SINE MIR 45 166 -42 1504 239 20 6 chr3 198969631 198969979 -19067179 - MLT1A1 LTR MaLR 0 365 13 460 240 131 11 chr3 198970328 198970503 -19066655 + MER117 DNA MER1_type 1 196 -1 454 251 74 29 chr3 198970664 198970839 -19066319 + L1ME2 LINE L1 3974 4156 -1990 2112 232 102 63 chr3 198970855 198971723 -19065435 + L1ME2 LINE L1 5254 6155 -9 194 275 108 75 chr3 198971800 198971920 -19065238 + MIR3 SINE MIR 75 198 -10 316 309 146 22 chr3 198972425 198972603 -19064555 - MIR SINE MIR -3 259 60 205 291 35 47 chr3 198972620 198972759 -19064399 + MIR SINE MIR 11 144 -64 954 162 191 102 chr3 198973900 198974283 -19062875 - MSTC LTR MaLR -11 417 1 1759 198 34 78 chr3 198974410 198974820 -19062338 + L1MA1 LINE L1 503 894 -6671 * 14757 160 33 11 chr3 198974804 198975997 -19061161 + L1MA1 LINE L1 1733 2898 -4823 578 27 0 0 chr3 198975997 198976072 -19061086 + L1PA3 LINE L1 6081 6155 0 14757 160 33 11 chr3 198976072 198977369 -19059789 + L1MA1 LINE L1 2898 4165 -3556 1790 146 63 28 chr3 198977369 198977731 -19059427 - THE1C LTR MaLR 0 375 1 14757 160 33 11 chr3 198977731 198978993 -19058165 + L1MA1 LINE L1 4165 5398 -2323 351 0 0 0 chr3 198978993 198979032 -19058126 + (GAAAA)n Simple_repeat Simple_repeat 3 41 0 2080 145 0 0 chr3 198979040 198979344 -19057814 + AluSg SINE Alu 1 304 -6 14757 160 33 11 chr3 198979344 198981328 -19055830 + L1MA1 LINE L1 5404 7622 -99 2759 32 0 0 chr3 198981328 198981636 -19055522 - AluY SINE Alu -3 308 1 14757 160 33 11 chr3 198981636 198981732 -19055426 + L1MA1 LINE L1 7622 7714 -7 2145 156 17 0 chr3 198982069 198982429 -19054729 + MER47A DNA MER2_type 1 366 0 650 314 112 10 chr3 198984604 198984907 -19052251 - MLT1I LTR MaLR -8 401 68 913 196 105 13 chr3 198985005 198985234 -19051924 - L1MC3 LINE L1 -346 7439 7190 279 316 0 0 chr3 198985234 198985313 -19051845 - MLT1F1 LTR MaLR -442 125 47 272 330 100 10 chr3 198985321 198985421 -19051737 - MIR SINE MIR -61 147 39 216 326 101 0 chr3 198986532 198986621 -19050537 + L2 LINE L2 3169 3266 -6 347 308 21 14 chr3 198987050 198987193 -19049965 + L1ME LINE L1 5479 5622 -499 1544 234 85 59 chr3 198987315 198987404 -19049754 + MLT1F LTR MaLR 5 90 -415 2167 96 4 0 chr3 198987404 198987707 -19049451 - AluSx SINE Alu 0 304 1 1544 234 85 59 chr3 198987707 198988125 -19049033 + MLT1F LTR MaLR 90 502 -3 261 303 62 35 chr3 198988132 198988277 -19048881 - MIR SINE MIR -19 243 95 2193 78 7 7 chr3 198989104 198989411 -19047747 + AluY SINE Alu 1 307 -4 2677 32 3 0 chr3 198989705 198990013 -19047145 - AluY SINE Alu -2 309 1 404 270 111 32 chr3 198990432 198990621 -19046537 - MLT1J1 LTR MaLR 0 446 243 686 262 83 17 chr3 198991790 198992727 -19044431 - L1ME3A LINE L1 -9 6161 5103 225 318 47 53 chr3 198994550 198994720 -19042438 + L2 LINE L2 3143 3311 -2 40 21 0 0 chr3 198995076 198995123 -19042035 + AT_rich Low_complexity Low_complexity 1 47 0 272 293 67 0 chr3 198995301 198995376 -19041782 + MIR SINE MIR 64 143 -65 249 57 0 0 chr3 198995638 198995673 -19041485 + (TTA)n Simple_repeat Simple_repeat 2 36 0 329 299 86 70 chr3 198995750 198996051 -19041107 + MLT1K LTR MaLR 125 430 -158 294 292 91 25 chr3 198997346 198997537 -19039621 + MLT1L LTR MaLR 298 464 -47 211 170 0 38 chr3 198998146 198998199 -19038959 + T-rich Low_complexity Low_complexity 6 56 0 182 311 0 49 chr3 198998851 198998912 -19038246 - L2 LINE L2 -17 3296 3239 392 297 66 33 chr3 199000258 199000440 -19036718 - MLT1J2 LTR MaLR 0 450 263 281 293 61 24 chr3 199002469 199002633 -19034525 + Charlie8 DNA MER1_type 7 176 -2241 2252 97 3 16 chr3 199003747 199004055 -19033103 - AluSg SINE Alu -6 304 1 1092 178 136 74 chr3 199004718 199005151 -19032007 + LTR37B LTR ERV1 1 460 -8 510 285 62 7 chr3 199005564 199005708 -19031450 - MIR SINE MIR -109 153 2 189 403 56 0 chr3 199006354 199006426 -19030732 - L2 LINE L2 -47 3225 3150 2144 142 0 0 chr3 199006507 199006810 -19030348 + AluSx SINE Alu 1 303 -9 25 0 0 0 chr3 199006931 199006956 -19030202 + AT_rich Low_complexity Low_complexity 1 25 0 1096 272 185 18 chr3 199007378 199007870 -19029288 - MLT1K LTR MaLR -5 583 10 2243 99 3 0 chr3 199008964 199009257 -19027901 - AluSp SINE Alu -19 294 1 2407 72 10 0 chr3 199009490 199009795 -19027363 - AluY SINE Alu -3 308 1 312 284 64 0 chr3 199009927 199010036 -19027122 + MIR SINE MIR 47 162 -100 238 277 178 0 chr3 199010170 199010271 -19026887 + L2 LINE L2 3191 3309 -4 1650 219 61 11 chr3 199010307 199010751 -19026407 + MLT1C LTR MaLR 2 467 0 28 61 0 0 chr3 199012353 199012402 -19024756 + AT_rich Low_complexity Low_complexity 1 49 0 2192 90 0 37 chr3 199012482 199012782 -19024376 - AluY SINE Alu -22 289 1 669 82 0 10 chr3 199012782 199012879 -19024279 + L1MA2 LINE L1 6202 6297 -7 2145 156 17 0 chr3 199013216 199013576 -19023582 + MER47A DNA MER2_type 1 366 0 650 314 112 10 chr3 199015751 199016054 -19021104 - MLT1I LTR MaLR -8 401 68 913 196 105 13 chr3 199016152 199016381 -19020777 - L1MC3 LINE L1 -346 7439 7190 230 313 0 12 chr3 199016381 199016461 -19020697 - MLT1F1 LTR MaLR -442 125 47 207 290 104 13 chr3 199016464 199016560 -19020598 - MIR SINE MIR -58 150 47 216 326 101 0 chr3 199017680 199017769 -19019389 + L2 LINE L2 3169 3266 -6 535 301 43 46 chr3 199018198 199018543 -19018615 + L1ME LINE L1 5479 5822 -299 4517 193 72 9 chr3 199018562 199019712 -19017446 - L1P4 LINE L1 -394 5772 4697 215 91 0 23 chr3 199019712 199019756 -19017402 + (TTTTA)n Simple_repeat Simple_repeat 4 46 0 8376 34 3 5 chr3 199019758 199021537 -19015621 - L1PA3 LINE L1 -15 6140 4356 4517 193 72 9 chr3 199021537 199021658 -19015500 - L1P4 LINE L1 -1469 4697 4585 342 0 0 0 chr3 199021658 199021696 -19015462 + (TG)n Simple_repeat Simple_repeat 2 39 0 4517 193 72 9 chr3 199021696 199021971 -19015187 - L1P4 LINE L1 -1581 4585 4125 22 35 0 0 chr3 199021971 199022000 -19015158 + AT_rich Low_complexity Low_complexity 1 29 0 2119 263 65 49 chr3 199022010 199023001 -19014157 - HAL1 LINE L1 -3 2504 1499 869 259 57 12 chr3 199023004 199023251 -19013907 - MIR SINE MIR -1 261 4 822 279 78 22 chr3 199023251 199023664 -19013494 - HAL1 LINE L1 -1009 1498 1063 1589 73 17 17 chr3 199023693 199023926 -19013232 + MER61-int LTR ERV1 3453 3685 -1532 2071 105 17 17 chr3 199023927 199024222 -19012936 + AluSp SINE Alu 1 295 -18 2117 129 0 0 chr3 199024643 199024937 -19012221 - AluSq SINE Alu -19 294 1 799 290 90 25 chr3 199025001 199025401 -19011757 - HAL1 LINE L1 -1691 816 391 186 310 0 35 chr3 199025586 199025673 -19011485 - MIR3 SINE MIR -15 193 110 417 39 0 0 chr3 199026718 199026769 -19010389 + (CA)n Simple_repeat Simple_repeat 2 52 0 359 248 43 75 chr3 199027197 199027358 -19009800 - L2 LINE L2 -8 3305 3150 677 318 164 20 chr3 199027382 199027843 -19009315 - L2 LINE L2 -312 3001 2454 230 274 137 0 chr3 199027896 199027969 -19009189 - L2 LINE L2 0 3272 3190 212 333 117 39 chr3 199027981 199028212 -19008946 - L2 LINE L2 -700 2614 2366 444 302 28 66 chr3 199028238 199028393 -19008765 - MIR SINE MIR -10 252 106 1084 37 0 0 chr3 199028393 199028527 -19008631 + L1PA5 LINE L1 6021 6154 0 444 302 28 66 chr3 199028527 199028583 -19008575 - MIR SINE MIR -156 106 49 575 255 64 0 chr3 199028711 199028868 -19008290 + LTR16C LTR ERVL 325 491 0 232 298 36 24 chr3 199029591 199029675 -19007483 - MIR SINE MIR -67 141 57 32 0 0 0 chr3 199029682 199029714 -19007444 + AT_rich Low_complexity Low_complexity 1 32 0 309 176 44 0 chr3 199029719 199029787 -19007371 - L1PB4 LINE L1 -12 6144 6074 34 55 0 0 chr3 199030520 199030575 -19006583 + AT_rich Low_complexity Low_complexity 1 55 0 705 153 0 0 chr3 199030577 199030688 -19006470 + FLAM_C SINE Alu 1 111 -32 289 317 77 0 chr3 199030759 199030863 -19006295 - MIR3 SINE MIR -16 192 81 351 278 0 70 chr3 199031386 199031501 -19005657 - MIR SINE MIR -85 123 17 311 247 12 12 chr3 199032422 199032507 -19004651 - MER94 DNA DNA -49 85 1 219 387 66 28 chr3 199032592 199032698 -19004460 - L2 LINE L2 -11 3261 3152 22 0 0 0 chr3 199033487 199033509 -19003649 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr3 199033575 199033602 -19003556 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr3 199034614 199034637 -19002521 + AT_rich Low_complexity Low_complexity 1 23 0 315 309 138 0 chr3 199034652 199034775 -19002383 - MIR SINE MIR -89 173 34 2123 151 71 13 chr3 199035791 199036183 -19000975 - MSTB LTR MaLR 0 426 12 180 0 0 0 chr3 199036261 199036281 -19000877 + (T)n Simple_repeat Simple_repeat 1 20 0 710 144 8 2 chr3 199036299 199036543 -19000615 + AluSx SINE Alu 2 298 -14 376 274 46 57 chr3 199036834 199037009 -19000149 - MIR SINE MIR -77 185 13 683 295 178 42 chr3 199037525 199038362 -18998796 + L2 LINE L2 2312 3270 -43 498 325 36 6 chr3 199039274 199039440 -18997718 + MIR3 SINE MIR 30 200 -8 1832 164 3 13 chr3 199039517 199039829 -18997329 + AluJb SINE Alu 1 309 -3 298 301 117 0 chr3 199039871 199039974 -18997184 - L2 LINE L2 0 3313 3199 1110 219 4 21 chr3 199039992 199040229 -18996929 + AluJb SINE Alu 76 308 -4 2068 107 3 30 chr3 199040997 199041295 -18995863 - AluSx SINE Alu -8 304 15 23 0 0 0 chr3 199041438 199041461 -18995697 + AT_rich Low_complexity Low_complexity 1 23 0 624 325 74 0 chr3 199041572 199041803 -18995355 + LTR16A LTR ERVL 3 250 -200 609 309 165 18 chr3 199042080 199042462 -18994696 + LTR16A LTR ERVL 13 450 0 25 31 0 0 chr3 199042854 199042886 -18994272 + AT_rich Low_complexity Low_complexity 1 32 0 292 272 62 0 chr3 199043875 199043956 -18993202 - MIR SINE MIR -17 245 160 1971 234 148 12 chr3 199044006 199044506 -18992652 + MER69 DNA AcHobo 1 568 -1958 1504 211 55 47 chr3 199044492 199044979 -18992179 + MER69 DNA AcHobo 2000 2490 -36 * 249 194 48 65 chr3 199044988 199045050 -18992108 - MIR SINE MIR -179 83 23 220 354 130 14 chr3 199045343 199045558 -18991600 + L2 LINE L2 590 829 -2485 513 257 75 28 chr3 199046653 199046867 -18990291 + Charlie8 DNA MER1_type 42 265 -2152 291 250 36 36 chr3 199046911 199046995 -18990163 - MIR3 SINE MIR -51 157 74 256 299 6 6 chr3 199047583 199047750 -18989408 + CT-rich Low_complexity Low_complexity 5 171 0 576 293 98 19 chr3 199048037 199048303 -18988855 + LTR16C LTR ERVL 192 478 -13 625 305 0 24 chr3 199048520 199048733 -18988425 - MIR SINE MIR -48 214 7 353 301 128 23 chr3 199048731 199048950 -18988208 + MIR SINE MIR 7 248 -14 * 205 83 28 28 chr3 199049746 199049782 -18987376 + MIR SINE MIR 117 152 -110 370 94 0 0 chr3 199050402 199050455 -18986703 + L1MC3 LINE L1 7678 7730 -55 265 113 97 32 chr3 199250475 199250537 -18786621 - L1PA13 LINE L1 -5 6158 6093 1088 81 0 37 chr3 199250538 199250699 -18786459 - AluSx SINE Alu 0 310 156 909 88 0 0 chr3 199250700 199250813 -18786345 - AluSx SINE Alu -194 118 6 4972 108 1 0 chr3 199250813 199251499 -18785659 - L1PA13 LINE L1 -71 6092 5406 307 136 198 0 chr3 199251666 199251747 -18785411 + L1MC2 LINE L1 6248 6344 0 1274 174 0 9 chr3 199252051 199252281 -18784877 - AluJo SINE Alu -1 311 84 1808 176 3 0 chr3 199252372 199252673 -18784485 - AluJo SINE Alu -10 302 1 383 268 67 77 chr3 199252856 199252971 -18784187 + L1ME LINE L1 5525 5640 -481 2391 39 0 11 chr3 199252971 199253291 -18783867 - AluY SINE Alu 0 317 1 383 268 67 77 chr3 199253291 199253383 -18783775 + L1ME LINE L1 5640 5731 -390 209 33 33 0 chr3 199253385 199253415 -18783743 + (TAAAA)n Simple_repeat Simple_repeat 1 31 0 874 250 18 32 chr3 199253415 199253527 -18783631 - L1M4 LINE L1 -833 5313 5201 2400 87 0 3 chr3 199253527 199253837 -18783321 - AluSc SINE Alu 0 309 1 874 250 18 32 chr3 199253837 199254064 -18783094 - L1M4 LINE L1 -945 5201 4979 971 122 162 15 chr3 199254069 199254266 -18782892 + MSTA LTR MaLR 1 226 -202 1164 93 19 0 chr3 199254368 199254530 -18782628 + AluSg/x SINE Alu 130 294 -18 357 247 0 12 chr3 199254547 199254632 -18782526 + MIR3 SINE MIR 124 207 -1 391 250 81 54 chr3 199254636 199254784 -18782374 - MIR3 SINE MIR 0 208 57 337 271 62 62 chr3 199255136 199255346 -18781812 - L2 LINE L2 -21 3292 3083 1457 93 0 56 chr3 199255525 199255740 -18781418 - AluSc SINE Alu -106 203 1 2167 210 69 11 chr3 199255743 199256309 -18780849 - L1M4 LINE L1 -986 5160 4562 1321 305 86 54 chr3 199256553 199257184 -18779974 - L2 LINE L2 -4 3309 2639 2180 235 67 25 chr3 199257184 199257751 -18779407 + MLT1E LTR MaLR 1 591 -2 1321 305 86 54 chr3 199257751 199257873 -18779285 - L2 LINE L2 -674 2639 2522 642 260 9 91 chr3 199258522 199258616 -18778542 + MIR SINE MIR 3 70 -192 1983 117 31 3 chr3 199258616 199258906 -18778252 - AluSq SINE Alu -15 298 1 642 260 9 91 chr3 199258906 199259030 -18778128 + MIR SINE MIR 70 203 -59 1875 124 0 11 chr3 199259396 199259662 -18777496 + AluSg SINE Alu 1 263 -47 23 33 0 0 chr3 199259944 199259974 -18777184 + AT_rich Low_complexity Low_complexity 1 30 0 2169 104 3 26 chr3 199260460 199260769 -18776389 + AluSg SINE Alu 1 302 -8 2392 70 0 0 chr3 199260773 199261059 -18776099 + AluY SINE Alu 1 286 -25 218 346 0 39 chr3 199261159 199261237 -18775921 - MIR SINE MIR -164 98 24 1179 23 0 0 chr3 199261239 199261368 -18775790 + L1PA5 LINE L1 6021 6149 -5 292 235 59 33 chr3 199261621 199261774 -18775384 - L1ME4a LINE L1 -3 6118 5962 344 226 132 26 chr3 199261791 199261981 -18775177 - L1ME4a LINE L1 -225 5896 5687 655 286 71 9 chr3 199262089 199262313 -18774845 + MIR SINE MIR 9 246 -16 2125 116 13 7 chr3 199263095 199263396 -18773762 - AluSq SINE Alu -10 303 1 520 255 94 0 chr3 199263396 199263545 -18773613 - MER21B LTR ERV1 -372 491 329 194 271 0 42 chr3 199263776 199263824 -18773334 - MIR3 SINE MIR -51 157 112 1380 78 0 0 chr3 199264476 199264643 -18772515 - AluSp SINE Alu -13 300 134 22 0 0 0 chr3 199264791 199264813 -18772345 + AT_rich Low_complexity Low_complexity 1 22 0 2654 212 94 36 chr3 199264828 199265965 -18771193 - L1ME2 LINE L1 -9 6155 4962 1038 209 60 7 chr3 199266123 199266405 -18770753 - L1ME2 LINE L1 -1526 4620 4324 1414 89 0 0 chr3 199266416 199266595 -18770563 + AluSc SINE Alu 1 179 -130 1558 150 0 26 chr3 199266703 199266970 -18770188 + AluJb SINE Alu 33 292 -20 1921 161 0 3 chr3 199268509 199268808 -18768350 - AluSx SINE Alu -6 306 9 493 116 0 0 chr3 199268981 199269050 -18768108 + MER41A LTR ERV1 486 554 0 2050 117 0 32 chr3 199269141 199269457 -18767701 - AluSc SINE Alu -2 307 2 519 198 0 9 chr3 199269915 199270021 -18767137 - MER69 DNA AcHobo 0 2526 2422 375 154 308 10 chr3 199270026 199270130 -18767028 - MER69 DNA AcHobo -2357 169 35 360 231 36 118 chr3 199270161 199270318 -18766840 + L1ME3A LINE L1 5977 6117 -53 2396 93 0 6 chr3 199270318 199270629 -18766529 - AluSq SINE Alu -4 309 1 360 231 36 118 chr3 199270629 199270666 -18766492 + L1ME3A LINE L1 6117 6155 -15 309 192 0 0 chr3 199270842 199270894 -18766264 + Alu SINE Alu 1 52 -250 2026 110 4 0 chr3 199270999 199271272 -18765886 - AluSp SINE Alu -39 274 1 345 296 142 49 chr3 199271293 199271841 -18765317 + L2 LINE L2 1791 2389 -925 217 373 77 21 chr3 199272048 199272281 -18764877 + L2 LINE L2 2529 2774 -540 350 346 23 8 chr3 199272299 199272432 -18764726 + L2 LINE L2 2883 3017 -255 658 269 134 10 chr3 199272700 199272901 -18764257 + MIR SINE MIR 7 232 -30 487 181 34 96 chr3 199273442 199273619 -18763539 + L1MC4 LINE L1 7877 8042 0 23 33 0 0 chr3 199273827 199273857 -18763301 + AT_rich Low_complexity Low_complexity 1 30 0 1272 108 0 0 chr3 199274320 199274487 -18762671 - AluSp SINE Alu -16 297 131 4376 190 89 10 chr3 199274838 199275870 -18761288 + L1MB2 LINE L1 3590 4703 -1443 2339 102 0 16 chr3 199275878 199276192 -18760966 + AluSx SINE Alu 1 309 -3 5040 154 42 17 chr3 199276195 199276624 -18760534 + L1MB2 LINE L1 5042 5459 -712 201 74 0 0 chr3 199276624 199276651 -18760507 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5040 154 42 17 chr3 199276651 199277321 -18759837 + L1MB2 LINE L1 5459 6171 0 2470 88 0 3 chr3 199277327 199277635 -18759523 + AluSp SINE Alu 1 307 -6 1874 202 23 27 chr3 199277637 199277713 -18759445 + L1M4 LINE L1 5321 5396 -778 1982 133 20 0 chr3 199277713 199278014 -18759144 + AluY SINE Alu 2 308 -3 1874 202 23 27 chr3 199278014 199278414 -18758744 + L1M4 LINE L1 5396 5746 -428 2046 105 25 0 chr3 199278416 199278702 -18758456 + AluSq SINE Alu 1 293 -20 228 293 0 13 chr3 199279467 199279542 -18757616 + L2 LINE L2 3199 3272 0 387 331 65 65 chr3 199280621 199281038 -18756120 + L1M2 LINE L1 822 1238 -5611 1205 172 71 40 chr3 199282715 199283011 -18754147 + AluJb SINE Alu 1 305 -7 1249 117 5 5 chr3 199283320 199283508 -18753650 - AluSq SINE Alu -1 312 125 400 225 50 0 chr3 199288636 199288716 -18748442 + L2 LINE L2 3189 3272 0 24 0 0 0 chr3 199291338 199291362 -18745796 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 199292054 199292075 -18745083 + AT_rich Low_complexity Low_complexity 1 21 0 218 143 119 0 chr3 199292379 199292421 -18744737 - MIR SINE MIR -26 236 190 24 0 0 0 chr3 199292528 199292552 -18744606 + AT_rich Low_complexity Low_complexity 1 24 0 463 304 120 28 chr3 199294054 199294271 -18742887 - MIR SINE MIR -11 251 15 1011 211 61 45 chr3 199294577 199294889 -18742269 + MER5C DNA MER1_type 1 317 -7 1793 155 17 14 chr3 199295112 199295408 -18741750 - AluJo SINE Alu -15 297 1 2061 131 3 25 chr3 199295606 199295920 -18741238 - AluSx SINE Alu -5 307 1 1643 158 50 20 chr3 199297207 199297510 -18739648 + AluSx SINE Alu 1 312 0 1977 104 0 21 chr3 199298580 199298860 -18738298 - AluY SINE Alu -1 310 37 25 75 0 0 chr3 199299419 199299472 -18737686 + AT_rich Low_complexity Low_complexity 1 53 0 3390 80 52 7 chr3 199300339 199300779 -18736379 + LTR46 LTR ERV1 1 460 0 409 227 199 14 chr3 199300862 199301003 -18736155 + MIR SINE MIR 96 262 0 1864 138 46 26 chr3 199301227 199301532 -18735626 - AluJb SINE Alu -1 311 1 674 232 123 45 chr3 199301659 199301879 -18735279 + MER69 DNA AcHobo 39 275 -2251 1600 80 5 0 chr3 199301883 199302083 -18735075 + AluSp SINE Alu 1 201 -112 5863 100 27 2 chr3 199302156 199303124 -18734034 + L1PB1 LINE L1 5119 6108 -43 491 227 142 28 chr3 199303421 199303597 -18733561 + MIR SINE MIR 67 262 0 299 305 192 0 chr3 199303757 199303908 -18733250 + L2 LINE L2 3133 3312 -1 336 266 125 8 chr3 199304313 199304441 -18732717 + MIR SINE MIR 118 260 -2 24 77 0 0 chr3 199304940 199304992 -18732166 + AT_rich Low_complexity Low_complexity 1 52 0 2222 118 3 0 chr3 199305131 199305435 -18731723 + AluSc SINE Alu 3 307 -2 1783 189 0 3 chr3 199305442 199305563 -18731595 + AluJb SINE Alu 1 121 -191 243 0 0 0 chr3 199305563 199305590 -18731568 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1783 189 0 3 chr3 199305590 199305769 -18731389 + AluJb SINE Alu 121 300 -12 22 56 0 0 chr3 199306776 199306812 -18730346 + AT_rich Low_complexity Low_complexity 1 36 0 213 297 30 69 chr3 199307634 199307696 -18729462 + MIR3 SINE MIR 95 153 -55 455 301 77 0 chr3 199307696 199307879 -18729279 - MER117 DNA MER1_type 0 197 1 213 297 30 69 chr3 199307879 199307917 -18729241 + MIR3 SINE MIR 153 191 -17 21 0 0 0 chr3 199308391 199308412 -18728746 + AT_rich Low_complexity Low_complexity 1 21 0 581 203 38 15 chr3 199308979 199309112 -18728046 + Charlie4 DNA MER1_type 1823 1958 -3 256 130 0 22 chr3 199309208 199309254 -18727904 - L1ME1 LINE L1 -177 5989 5945 24 53 0 0 chr3 199309760 199309798 -18727360 + AT_rich Low_complexity Low_complexity 1 38 0 31 26 0 0 chr3 199310014 199310052 -18727106 + AT_rich Low_complexity Low_complexity 1 38 0 2781 7 0 0 chr3 199310311 199310616 -18726542 - AluYa5 SINE Alu -6 305 1 2143 122 0 0 chr3 199310884 199311180 -18725978 + AluSq SINE Alu 1 296 -17 301 261 134 67 chr3 199311357 199311610 -18725548 - L1ME LINE L1 -559 5562 5293 348 309 157 39 chr3 199311648 199312107 -18725051 - L1ME LINE L1 -887 5259 4747 899 75 17 0 chr3 199312887 199313007 -18724151 - AluSg/x SINE Alu -13 299 178 395 59 0 0 chr3 199313007 199313058 -18724100 - AluSp/q SINE Alu -72 231 181 1917 69 0 0 chr3 199313058 199313290 -18723868 - AluSg SINE Alu -78 232 1 1697 168 52 0 chr3 199315162 199315453 -18721705 - AluJb SINE Alu -6 306 1 204 179 164 60 chr3 199315799 199315866 -18721292 + MER5C DNA MER1_type 3 76 -248 1639 183 21 0 chr3 199316793 199317077 -18720081 - AluJb SINE Alu -19 293 4 1453 153 47 101 chr3 199317586 199317971 -18719187 + MLT1A1 LTR MaLR 1 364 -1 40 37 0 0 chr3 199318189 199318243 -18718915 + AT_rich Low_complexity Low_complexity 1 54 0 1400 193 17 0 chr3 199318243 199318481 -18718677 - AluJo SINE Alu -70 242 1 2139 107 10 0 chr3 199318705 199319028 -18718130 + AluSp SINE Alu 1 326 0 1257 119 100 132 chr3 199319470 199319849 -18717309 - Cheshire DNA MER1_type 0 2420 2054 * 2261 215 38 36 chr3 199319846 199320399 -18716759 - Cheshire DNA MER1_type -1866 554 1 277 345 100 78 chr3 199321221 199321630 -18715528 - L2 LINE L2 -35 3237 2820 2372 75 0 0 chr3 199322331 199322626 -18714532 + AluY SINE Alu 1 295 -16 183 286 0 20 chr3 199322646 199322695 -18714463 - MIR3 SINE MIR -3 205 158 1862 146 14 0 chr3 199323132 199323420 -18713738 - AluJo SINE Alu -14 298 7 1071 101 0 0 chr3 199323497 199323646 -18713512 - AluSg/x SINE Alu -9 301 153 867 73 0 0 chr3 199323645 199323754 -18713404 - AluY SINE Alu -202 109 1 * 368 310 97 35 chr3 199323865 199324010 -18713148 - L2 LINE L2 0 3272 3119 2837 172 62 16 chr3 199324222 199324831 -18712327 - L1MB7 LINE L1 -41 6143 5507 556 291 92 10 chr3 199325552 199325748 -18711410 - MIR SINE MIR -17 245 34 735 218 104 45 chr3 199326452 199326575 -18710583 - MER58C DNA MER1_type -2205 215 74 1962 138 45 0 chr3 199326575 199326866 -18710292 + AluSx SINE Alu 1 304 -8 735 218 104 45 chr3 199326866 199326944 -18710214 - MER58C DNA MER1_type -2346 74 2 1847 145 20 14 chr3 199327218 199327514 -18709644 + AluSx SINE Alu 2 299 -13 250 188 50 0 chr3 199327514 199327674 -18709484 + (TA)n Simple_repeat Simple_repeat 1 168 0 22 0 0 0 chr3 199328720 199328742 -18708416 + AT_rich Low_complexity Low_complexity 1 22 0 2062 218 82 32 chr3 199329729 199330349 -18706809 + L1M4 LINE L1 3670 4320 -1826 27 62 0 0 chr3 199330696 199330744 -18706414 + AT_rich Low_complexity Low_complexity 1 48 0 2172 55 44 4 chr3 199331242 199331538 -18705620 + AluY SINE Alu 1 307 0 483 306 116 25 chr3 199331544 199331871 -18705287 + HAL1 LINE L1 2 358 -2149 1833 125 0 104 chr3 199332145 199332482 -18704676 - AluJb SINE Alu -10 302 1 887 133 0 0 chr3 199332487 199332615 -18704543 - AluJb SINE Alu -15 297 170 280 305 0 0 chr3 199332618 199332700 -18704458 + HAL1 LINE L1 820 901 -1606 2436 74 3 0 chr3 199333081 199333380 -18703778 + AluSp SINE Alu 1 300 -13 3774 232 86 47 chr3 199333547 199335050 -18702108 + HAL1 LINE L1 945 2505 -2 2315 84 0 16 chr3 199336996 199337307 -18699851 + AluY SINE Alu 1 306 -5 243 378 15 22 chr3 199337827 199337962 -18699196 - MIR SINE MIR -122 140 7 3005 208 56 35 chr3 199338308 199339559 -18697599 - L1MC/D LINE L1 -608 5751 4453 2871 225 84 63 chr3 199339589 199339645 -18697513 - L1M4 LINE L1 -812 5334 5281 432 0 0 0 chr3 199339645 199339693 -18697465 + (TG)n Simple_repeat Simple_repeat 2 49 0 2871 225 84 63 chr3 199339693 199339944 -18697214 - L1M4 LINE L1 -865 5281 5037 216 0 0 0 chr3 199339944 199339968 -18697190 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2324 71 0 0 chr3 199339971 199340253 -18696905 - AluSp SINE Alu -31 282 1 2871 225 84 63 chr3 199340253 199340948 -18696210 - L1M4 LINE L1 -1110 5036 4295 2025 87 49 3 chr3 199340948 199341234 -18695924 + AluSc SINE Alu 1 299 -10 2871 225 84 63 chr3 199341234 199341445 -18695713 - L1M4 LINE L1 -1851 4295 4090 1070 195 74 100 chr3 199341442 199341832 -18695326 - L1M4 LINE L1 -877 5203 4824 * 506 263 11 90 chr3 199341881 199342147 -18695011 - L1ME LINE L1 -2681 3399 3155 * 1111 197 93 13 chr3 199342142 199342442 -18694716 - L1ME LINE L1 -3129 2951 2628 1127 258 69 11 chr3 199342459 199342932 -18694226 - L1ME LINE L1 -3818 2262 1798 284 220 75 48 chr3 199342945 199343131 -18694027 + L1M4 LINE L1 3035 3225 -2921 1951 134 7 0 chr3 199343136 199343419 -18693739 - AluSx SINE Alu -16 296 12 2789 114 22 47 chr3 199343427 199343856 -18693302 - L1MA4A LINE L1 -401 5902 5485 198 0 0 0 chr3 199343856 199343878 -18693280 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2789 114 22 47 chr3 199343878 199343938 -18693220 - L1MA4A LINE L1 -818 5485 5425 2271 88 0 0 chr3 199343942 199344249 -18692909 - AluSx SINE Alu 0 308 2 729 116 9 0 chr3 199344250 199344362 -18692796 - L1MA4A LINE L1 -1153 4993 4881 * 1539 260 98 57 chr3 199344359 199345660 -18691498 - L1ME LINE L1 -4715 1365 19 31 0 0 0 chr3 199345790 199345821 -18691337 + AT_rich Low_complexity Low_complexity 1 31 0 497 235 159 0 chr3 199346587 199346719 -18690439 + MIR SINE MIR 30 182 -80 2127 97 49 0 chr3 199347102 199347390 -18689768 + AluSx SINE Alu 1 302 -10 3724 148 55 8 chr3 199347502 199348136 -18689022 - L1MB5 LINE L1 -35 6139 5476 221 262 103 65 chr3 199348426 199348533 -18688625 + L2 LINE L2 3162 3272 0 2193 99 3 13 chr3 199349134 199349446 -18687712 + AluSx SINE Alu 1 309 -3 1938 141 13 3 chr3 199351252 199351556 -18685602 + MER21A-int LTR ERV1 3830 4136 -55 1468 150 91 13 chr3 199351643 199352033 -18685125 + MER21A LTR ERV1 1 441 -422 215 31 31 0 chr3 199352171 199352203 -18684955 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2425 75 3 3 chr3 199352439 199352744 -18684414 - AluY SINE Alu -6 305 1 307 173 0 0 chr3 199352924 199352976 -18684182 - Tigger4(Zombi) DNA MER2_type -2679 52 1 2742 237 109 47 chr3 199353017 199354263 -18682895 - L2 LINE L2 -10 3303 1969 2114 123 0 10 chr3 199354528 199354836 -18682322 + AluSx SINE Alu 1 305 -7 2958 113 9 0 chr3 199355012 199355435 -18681723 - L1PA13 LINE L1 -20 6143 5717 328 283 92 0 chr3 199355451 199355571 -18681587 - L1ME4a LINE L1 -195 5926 5796 200 111 28 0 chr3 199355626 199355662 -18681496 + (TA)n Simple_repeat Simple_repeat 1 37 0 247 300 200 0 chr3 199355701 199355831 -18681327 + L2 LINE L2 3117 3272 0 22 0 0 0 chr3 199356504 199356526 -18680632 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr3 199356770 199356807 -18680351 + AT_rich Low_complexity Low_complexity 1 37 0 250 213 21 0 chr3 199356887 199356934 -18680224 - L2 LINE L2 -68 3204 3157 848 309 140 18 chr3 199358553 199359052 -18678106 + L2 LINE L2 1979 2538 -776 494 114 0 38 chr3 199359180 199359259 -18677899 + Tigger2 DNA MER2_type 1 76 -2642 * 2487 147 48 5 chr3 199359247 199359668 -18677490 + Tigger2 DNA MER2_type 2280 2718 0 31 26 0 0 chr3 199360081 199360119 -18677039 + AT_rich Low_complexity Low_complexity 1 38 0 181 310 50 30 chr3 199360367 199360467 -18676691 + L2 LINE L2 2662 2763 -551 1753 164 17 10 chr3 199360811 199361104 -18676054 + AluJb SINE Alu 1 295 -17 36 23 0 0 chr3 199361464 199361507 -18675651 + AT_rich Low_complexity Low_complexity 1 43 0 1300 284 184 34 chr3 199362463 199363470 -18673688 - L2 LINE L2 0 3313 2139 1069 160 18 0 chr3 199364100 199364269 -18672889 - AluJb SINE Alu -13 299 128 21 36 0 0 chr3 199365640 199365668 -18671490 + AT_rich Low_complexity Low_complexity 1 28 0 36 62 0 0 chr3 199365774 199365838 -18671320 + AT_rich Low_complexity Low_complexity 1 64 0 26 0 0 0 chr3 199366337 199366363 -18670795 + AT_rich Low_complexity Low_complexity 1 26 0 735 263 60 16 chr3 199366902 199367153 -18670005 + MIR SINE MIR 1 262 0 386 239 56 35 chr3 199367276 199367418 -18669740 + L2 LINE L2 3169 3313 0 1112 121 12 6 chr3 199368524 199368689 -18668469 - AluSg/x SINE Alu -13 297 132 2112 115 0 16 chr3 199368689 199369003 -18668155 - AluY SINE Alu -2 309 1 225 338 60 60 chr3 199369192 199369408 -18667750 - L2 LINE L2 -237 3035 2820 454 353 49 38 chr3 199369887 199370255 -18666903 + L1ME LINE L1 50 421 -5649 1552 176 62 37 chr3 199370256 199370608 -18666550 + L1ME1 LINE L1 5806 6166 0 7053 55 6 3 chr3 199370665 199372324 -18664834 + L1PA5 LINE L1 4494 6154 0 513 223 189 0 chr3 199372671 199372846 -18664312 - MER3 DNA MER1_type 0 209 2 318 279 5 24 chr3 199373134 199373340 -18663818 + G-rich Low_complexity Low_complexity 1 202 0 1246 155 0 5 chr3 199373341 199373541 -18663617 + AluSg/x SINE Alu 105 303 -6 409 227 99 133 chr3 199373551 199373754 -18663404 + MIR SINE MIR 62 256 -6 1660 162 54 0 chr3 199373965 199374243 -18662915 - AluJb SINE Alu -19 293 1 2252 55 26 29 chr3 199375275 199375586 -18661572 + AluY SINE Alu 2 311 0 237 65 0 0 chr3 199375697 199375728 -18661430 + (T)n Simple_repeat Simple_repeat 1 31 0 2240 112 0 0 chr3 199377066 199377370 -18659788 + AluSc SINE Alu 1 304 -5 1707 183 3 3 chr3 199379830 199380119 -18657039 - AluJb SINE Alu -23 289 1 2050 119 3 7 chr3 199380280 199380594 -18656564 + AluSq SINE Alu 1 313 0 1926 161 7 0 chr3 199380619 199380929 -18656229 + AluJb SINE Alu 1 312 0 4330 141 21 7 chr3 199381155 199381222 -18655936 + L1MB3 LINE L1 5409 5474 -709 234 0 0 0 chr3 199381222 199381248 -18655910 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 4330 141 21 7 chr3 199381248 199381937 -18655221 + L1MB3 LINE L1 5474 6176 -7 1632 238 135 25 chr3 199383157 199383801 -18653357 + MER20B DNA MER1_type 66 780 -3 1901 133 46 0 chr3 199384307 199384592 -18652566 - AluSx SINE Alu -14 298 1 324 303 42 50 chr3 199384758 199384877 -18652281 - L2 LINE L2 -7 3306 3189 226 287 113 35 chr3 199384917 199385032 -18652126 - L2 LINE L2 -947 2367 2244 2035 133 0 0 chr3 199385106 199385400 -18651758 + AluSx SINE Alu 1 294 -18 205 73 24 24 chr3 199385404 199385445 -18651713 + (TAAAA)n Simple_repeat Simple_repeat 1 41 0 857 191 78 30 chr3 199385701 199385932 -18651226 + L1MC3 LINE L1 7543 7784 -1 246 284 45 0 chr3 199387484 199387551 -18649607 + MIR SINE MIR 31 100 -162 21 0 0 0 chr3 199387601 199387622 -18649536 + AT_rich Low_complexity Low_complexity 1 21 0 528 298 134 19 chr3 199387958 199388659 -18648499 + L1MEd LINE L1 874 1748 -742 4405 173 32 34 chr3 199388713 199388894 -18648264 + L1MB7 LINE L1 5154 5334 -850 2164 118 0 19 chr3 199388894 199389207 -18647951 + AluSp SINE Alu 1 307 -6 4405 173 32 34 chr3 199389207 199390041 -18647117 + L1MB7 LINE L1 5334 6172 -12 2166 87 40 3 chr3 199390123 199390421 -18646737 + AluY SINE Alu 2 310 -1 305 363 68 0 chr3 199390554 199390744 -18646414 + L1MC/D LINE L1 4578 4780 -1366 487 278 95 32 chr3 199390878 199391307 -18645851 + L1MC/D LINE L1 4865 5329 -817 606 293 184 7 chr3 199391340 199391644 -18645514 + L1MC/D LINE L1 5395 5752 -2056 1212 296 100 19 chr3 199391850 199392491 -18644667 - L2 LINE L2 -81 3232 2533 294 69 69 52 chr3 199392582 199392640 -18644518 - L1MA8 LINE L1 -3 6288 6230 674 202 56 22 chr3 199392950 199393128 -18644030 + L1MC5 LINE L1 7711 7894 -67 1834 127 6 67 chr3 199393554 199393870 -18643288 + AluSx SINE Alu 1 297 -15 1731 142 34 54 chr3 199394130 199394426 -18642732 + AluJo SINE Alu 3 292 -20 1725 181 13 7 chr3 199394515 199394824 -18642334 - AluJo SINE Alu -1 311 1 24 32 0 0 chr3 199394986 199395017 -18642141 + AT_rich Low_complexity Low_complexity 1 31 0 2246 75 16 0 chr3 199395081 199395386 -18641772 + AluY SINE Alu 1 310 -1 988 162 107 58 chr3 199395670 199395979 -18641179 - MER33 DNA MER1_type 0 324 1 304 341 41 32 chr3 199396333 199396456 -18640702 - L2 LINE L2 0 3272 3149 952 236 10 0 chr3 199396514 199396713 -18640445 - AluJo SINE Alu -23 289 89 774 187 102 13 chr3 199396775 199396918 -18640240 - MER33 DNA MER1_type -2284 301 127 2228 125 0 0 chr3 199396918 199397230 -18639928 - AluSx SINE Alu 0 312 1 774 187 102 13 chr3 199397230 199397321 -18639837 - MER33 DNA MER1_type -2458 127 46 397 225 244 31 chr3 199398080 199398240 -18638918 + MER3 DNA MER1_type 3 196 -13 25 0 0 0 chr3 199399596 199399621 -18637537 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr3 199400919 199400945 -18636213 + GC_rich Low_complexity Low_complexity 1 26 0 304 319 96 54 chr3 199400985 199401245 -18635913 + L1M2 LINE L1 559 829 -6020 2461 44 0 35 chr3 199402120 199402436 -18634722 + AluY SINE Alu 1 305 -6 324 259 281 22 chr3 199402764 199402949 -18634209 - MIR SINE MIR -12 250 18 2232 83 6 25 chr3 199403276 199403590 -18633568 - AluSc SINE Alu -1 308 1 1759 153 246 43 chr3 199403670 199404187 -18632971 - LTR29 LTR ERV1 0 622 1 494 236 157 21 chr3 199404208 199404399 -18632759 - MER112 DNA MER1_type -43 217 1 232 296 102 39 chr3 199404741 199404947 -18632211 - L2 LINE L2 -217 3055 2837 2390 87 0 7 chr3 199406033 199406333 -18630825 + AluY SINE Alu 1 298 -13 1958 141 48 0 chr3 199407791 199408082 -18629076 - AluJb SINE Alu -7 305 1 239 246 82 0 chr3 199408861 199408922 -18628236 + L2 LINE L2 3134 3199 -73 2182 108 47 0 chr3 199408980 199409277 -18627881 + AluSx SINE Alu 1 311 -1 291 345 109 0 chr3 199409663 199409773 -18627385 - L2 LINE L2 0 3272 3151 880 132 0 0 chr3 199411481 199411610 -18625548 + FLAM_C SINE Alu 12 140 -3 1113 172 0 0 chr3 199412804 199412973 -18624185 + AluJb SINE Alu 129 297 -15 345 265 60 0 chr3 199413421 199413538 -18623620 - MIR SINE MIR 0 262 139 272 182 208 0 chr3 199413558 199413635 -18623523 - MIR SINE MIR -4 258 166 517 259 37 49 chr3 199413940 199414102 -18623056 - MIR SINE MIR -100 162 3 1377 172 55 52 chr3 199414987 199415298 -18621860 - AluJo SINE Alu 0 312 1 27 0 0 0 chr3 199415462 199415489 -18621669 + AT_rich Low_complexity Low_complexity 1 27 0 2081 127 3 0 chr3 199415489 199415780 -18621378 - AluSx SINE Alu -20 292 1 1478 178 23 6 chr3 199415780 199416078 -18621080 + MER21B LTR ERV1 461 866 -65 4797 192 216 22 chr3 199416725 199417927 -18619231 + L1MA4A LINE L1 2 1435 -5414 10261 198 82 28 chr3 199417939 199418081 -18619077 + L1MA4A LINE L1 2254 2387 -4461 245 111 0 0 chr3 199418081 199418117 -18619041 - U2 snRNA snRNA -152 36 1 10261 198 82 28 chr3 199418117 199418206 -18618952 + L1MA4A LINE L1 2387 2470 -4378 1810 162 41 0 chr3 199418206 199418496 -18618662 + AluSx SINE Alu 6 307 -5 10261 198 82 28 chr3 199418496 199420308 -18616850 + L1MA4A LINE L1 2470 4590 -2258 234 0 0 0 chr3 199420308 199420334 -18616824 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 10261 198 82 28 chr3 199420334 199421591 -18615567 + L1MA4A LINE L1 4590 5778 -1070 1093 112 31 0 chr3 199421598 199421759 -18615399 - MER30 DNA MER1_type 0 230 65 4392 127 20 28 chr3 199421913 199422084 -18615074 + L1MA4A LINE L1 5860 6031 -974 1629 95 0 18 chr3 199422084 199422305 -18614853 + AluSc SINE Alu 93 309 0 4392 127 20 28 chr3 199422305 199422316 -18614842 + L1MA4A LINE L1 6031 6041 -964 1823 139 21 0 chr3 199422316 199422604 -18614554 + L1PA16 LINE L1 5865 6158 -8 4392 127 20 28 chr3 199422604 199423339 -18613819 + L1MA4A LINE L1 6041 6774 -231 1435 109 13 4 chr3 199423389 199423619 -18613539 + L1MA4A LINE L1 6761 6992 -13 219 231 19 19 chr3 199423790 199423842 -18613316 - L2 LINE L2 -6 3266 3215 1820 169 0 4 chr3 199424207 199424508 -18612650 - AluJb SINE Alu 0 303 4 656 145 73 8 chr3 199425489 199425613 -18611545 + MLT1A1 LTR MaLR 1 132 -233 306 354 0 0 chr3 199425772 199425871 -18611287 + L1MC/D LINE L1 5346 5444 -798 1092 215 14 0 chr3 199425886 199426109 -18611049 + MLT1A1 LTR MaLR 140 365 0 492 380 50 34 chr3 199426696 199426879 -18610279 + L1ME LINE L1 5343 5522 -644 1831 166 3 3 chr3 199426879 199427181 -18609977 - AluJb SINE Alu -10 302 1 492 380 50 34 chr3 199427181 199427379 -18609779 + L1ME LINE L1 5522 5730 -436 2095 131 0 49 chr3 199427481 199427809 -18609349 + AluSq SINE Alu 1 312 -1 800 248 101 56 chr3 199427963 199428657 -18608501 + L1MC5 LINE L1 7062 7786 -175 602 271 59 42 chr3 199429100 199429336 -18607822 - MIR SINE MIR 0 262 23 1096 213 100 63 chr3 199429452 199429851 -18607307 + MLT2D LTR ERVL 1 414 0 738 127 0 0 chr3 199430899 199431025 -18606133 + (GGAA)n Simple_repeat Simple_repeat 3 128 0 854 144 0 0 chr3 199431227 199431352 -18605806 + FAM SINE Alu 1 125 -60 1462 109 45 41 chr3 199431352 199431573 -18605585 + AluSg/x SINE Alu 83 304 -6 2545 41 0 19 chr3 199432423 199432740 -18604418 - AluY SINE Alu 0 311 1 258 237 13 40 chr3 199432906 199432982 -18604176 + AluYb8 SINE Alu 99 172 -136 1985 94 0 0 chr3 199432997 199433251 -18603907 - AluSg1 SINE Alu -55 254 1 490 231 68 20 chr3 199433304 199433451 -18603707 + MIR SINE MIR 53 206 -56 213 265 88 0 chr3 199434519 199434587 -18602571 + MIR SINE MIR 119 192 -70 2435 77 0 0 chr3 199434606 199434903 -18602255 + AluSc SINE Alu 1 297 -12 189 188 0 0 chr3 199434935 199434967 -18602191 + MIR SINE MIR 225 256 -6 365 215 234 9 chr3 199435062 199435169 -18601989 + MER5A DNA MER1_type 59 189 0 2205 129 0 0 chr3 199435518 199435827 -18601331 + AluSx SINE Alu 1 309 -3 2215 90 20 10 chr3 199436311 199436441 -18600717 + AluSx SINE Alu 1 128 -184 225 0 0 0 chr3 199436441 199436466 -18600692 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 2215 90 20 10 chr3 199436466 199436636 -18600522 + AluSx SINE Alu 128 304 -8 2009 103 27 17 chr3 199436638 199436930 -18600228 + AluSx SINE Alu 1 295 -17 302 203 0 13 chr3 199436961 199437040 -18600118 + CT-rich Low_complexity Low_complexity 1 78 0 1946 150 3 0 chr3 199438640 199438926 -18598232 + AluJb SINE Alu 1 287 -25 23 0 0 0 chr3 199439768 199439791 -18597367 + AT_rich Low_complexity Low_complexity 1 23 0 1012 147 187 0 chr3 199441528 199441726 -18595432 + MER46A DNA MER2_type 1 235 -1 1738 117 78 75 chr3 199441752 199441922 -18595236 - AluSx SINE Alu -4 308 135 2105 92 34 14 chr3 199441922 199442217 -18594941 - AluSc SINE Alu -8 301 1 1738 117 78 75 chr3 199442217 199442353 -18594805 - AluSx SINE Alu -177 135 1 365 295 152 9 chr3 199442710 199442920 -18594238 - MIR SINE MIR 0 262 23 386 246 181 35 chr3 199443347 199443518 -18593640 - MIR SINE MIR -65 197 2 1915 131 11 0 chr3 199443667 199443941 -18593217 + AluSg SINE Alu 1 277 -33 21 0 0 0 chr3 199444867 199444888 -18592270 + AT_rich Low_complexity Low_complexity 1 21 0 710 188 143 37 chr3 199444984 199445229 -18591929 - HAL1 LINE L1 -109 2398 2128 1952 125 0 44 chr3 199445500 199445831 -18591327 + AluSx SINE Alu 3 320 0 2174 116 0 10 chr3 199446257 199446560 -18590598 + AluSx SINE Alu 1 300 -12 2008 238 51 34 chr3 199446972 199447663 -18589495 - HAL1 LINE L1 -737 1770 1061 2238 231 50 13 chr3 199447663 199448186 -18588972 - MLT1F LTR MaLR 0 542 1 2008 238 51 34 chr3 199448186 199448323 -18588835 - HAL1 LINE L1 -1446 1061 928 557 265 38 98 chr3 199448690 199448808 -18588350 + MIR SINE MIR 15 110 -152 2306 84 0 10 chr3 199448808 199449116 -18588042 + AluY SINE Alu 1 305 -6 557 265 38 98 chr3 199449116 199449261 -18587897 + MIR SINE MIR 110 262 0 1956 147 0 3 chr3 199449824 199450117 -18587041 + AluJb SINE Alu 1 292 -20 670 259 170 0 chr3 199450131 199450355 -18586803 - MIR SINE MIR 0 262 1 29 84 0 0 chr3 199450466 199450537 -18586621 + AT_rich Low_complexity Low_complexity 1 71 0 2283 110 3 0 chr3 199450537 199450837 -18586321 - AluSg SINE Alu -9 301 1 2597 134 5 31 chr3 199451125 199451318 -18585840 - L1PA14 LINE L1 -4 6157 5960 2041 132 48 0 chr3 199451318 199451607 -18585551 - AluSx SINE Alu -9 303 1 2597 134 5 31 chr3 199451607 199451861 -18585297 - L1PA14 LINE L1 -201 5960 5722 2240 109 0 16 chr3 199452308 199452621 -18584537 + AluSq SINE Alu 1 308 -5 239 269 0 0 chr3 199452715 199452767 -18584391 + T-rich Low_complexity Low_complexity 2 53 0 338 137 20 0 chr3 199452958 199453009 -18584149 - L2 LINE L2 -10 3262 3211 234 269 64 0 chr3 199453086 199453164 -18583994 + MIR SINE MIR 180 262 0 2217 103 0 0 chr3 199453895 199454177 -18582981 + AluSg SINE Alu 1 285 -25 195 0 39 0 chr3 199454177 199454203 -18582955 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 694 176 27 7 chr3 199454595 199454743 -18582415 - LTR37A LTR ERV1 -3 423 273 224 248 34 0 chr3 199454744 199454861 -18582297 + (TA)n Simple_repeat Simple_repeat 1 121 0 490 212 0 27 chr3 199454872 199454887 -18582271 + (TA)n Simple_repeat Simple_repeat 2 16 -164 2322 87 0 10 chr3 199454887 199455186 -18581972 - AluSg SINE Alu -14 296 1 490 212 0 27 chr3 199455186 199455354 -18581804 + (TA)n Simple_repeat Simple_repeat 16 180 0 1497 251 75 16 chr3 199455650 199456088 -18581070 + MER69 DNA AcHobo 105 568 -658 * 1696 192 50 28 chr3 199456072 199456535 -18580623 + MER69 DNA AcHobo 1997 2469 -57 1510 138 140 93 chr3 199457040 199457468 -18579690 + LTR7 LTR ERV1 1 448 -2 2163 117 0 0 chr3 199457511 199457810 -18579348 - AluY SINE Alu -12 299 1 641 313 53 9 chr3 199457825 199458052 -18579106 + MLT1K LTR MaLR 240 476 -112 42 16 0 31 chr3 199458367 199458387 -18578771 + AT_rich Low_complexity Low_complexity 1 20 -42 2223 111 0 0 chr3 199458387 199458676 -18578482 + AluSg SINE Alu 1 289 -21 252 0 0 0 chr3 199458676 199458704 -18578454 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 42 16 0 31 chr3 199458704 199458746 -18578412 + AT_rich Low_complexity Low_complexity 18 62 0 216 206 10 39 chr3 199458752 199458854 -18578304 + A-rich Low_complexity Low_complexity 5 103 0 32 26 0 0 chr3 199458868 199458907 -18578251 + AT_rich Low_complexity Low_complexity 1 39 0 2193 106 0 3 chr3 199459792 199460085 -18577073 - AluSc SINE Alu -12 297 6 243 274 16 0 chr3 199461538 199461600 -18575558 + L2 LINE L2 3251 3313 0 197 276 155 0 chr3 199461678 199461736 -18575422 - MIR SINE MIR -107 101 35 2312 87 0 3 chr3 199461768 199462057 -18575101 - AluSq SINE Alu -25 288 1 311 322 81 66 chr3 199462310 199462351 -18574807 + MIR SINE MIR 28 67 -195 2064 104 35 0 chr3 199462351 199462639 -18574519 - AluSp SINE Alu -15 298 1 311 322 81 66 chr3 199462639 199462808 -18574350 + MIR SINE MIR 67 241 -21 391 280 38 48 chr3 199462921 199463107 -18574051 - MIR3 SINE MIR -11 197 14 724 230 73 0 chr3 199463261 199463426 -18573732 + MIR SINE MIR 70 246 -16 2223 114 0 7 chr3 199463445 199463744 -18573414 - AluSx SINE Alu -15 297 1 299 300 0 22 chr3 199465188 199465278 -18571880 + MER5A DNA MER1_type 1 88 -101 291 219 49 24 chr3 199466478 199466560 -18570598 + Charlie7 DNA MER1_type 2529 2612 0 485 294 126 37 chr3 199466799 199467013 -18570145 + MIR SINE MIR 19 251 -11 307 216 54 0 chr3 199467942 199468016 -18569142 + MLT1D LTR MaLR 2 79 -426 2196 167 13 26 chr3 199468018 199468407 -18568751 - MSTB1 LTR MaLR -2 430 47 1085 164 0 6 chr3 199468410 199468587 -18568571 - AluJb SINE Alu -3 309 134 2055 127 0 7 chr3 199468587 199468886 -18568272 - AluSx SINE Alu -15 297 1 325 167 0 0 chr3 199468886 199468940 -18568218 - MSTB1 LTR MaLR -372 54 1 280 42 0 42 chr3 199469015 199469063 -18568095 + (TTTTA)n Simple_repeat Simple_repeat 1 46 0 1208 73 7 0 chr3 199469063 199469214 -18567944 - L1PA3 LINE L1 -24 6131 5980 428 241 21 64 chr3 199469227 199469368 -18567790 - MIR SINE MIR -119 143 9 191 264 83 0 chr3 199469377 199469449 -18567709 - MIR SINE MIR -108 154 77 1910 124 17 3 chr3 199469568 199469859 -18567299 - AluSc SINE Alu -14 295 1 2354 89 3 0 chr3 199470377 199470680 -18566478 - AluSx SINE Alu -8 304 1 2264 77 28 0 chr3 199471025 199471312 -18565846 + AluSg SINE Alu 2 296 -14 398 202 219 17 chr3 199471322 199471441 -18565717 - HAL1 LINE L1 -2364 143 1 1740 220 131 25 chr3 199471521 199471871 -18565287 - MER34 LTR ERV1 0 542 124 2325 112 0 0 chr3 199471871 199472183 -18564975 - AluSx SINE Alu 0 312 1 1740 220 131 25 chr3 199472183 199472322 -18564836 - MER34 LTR ERV1 -418 124 1 836 203 0 0 chr3 199472351 199472523 -18564635 - FRAM SINE Alu 0 172 1 23 86 0 0 chr3 199472691 199472749 -18564409 + AT_rich Low_complexity Low_complexity 1 58 0 5304 124 20 24 chr3 199472959 199473741 -18563417 + LTR19C LTR ERV1 1 779 0 15782 181 35 17 chr3 199473875 199474523 -18562635 - L1PA13 LINE L1 -1888 4909 4274 2371 95 0 0 chr3 199474523 199474829 -18562329 - AluSg SINE Alu -4 306 1 15782 181 35 17 chr3 199474829 199475154 -18562004 - L1PA13 LINE L1 -2523 4274 3956 2183 120 3 0 chr3 199475154 199475453 -18561705 - AluSx SINE Alu -12 300 1 15782 181 35 17 chr3 199475453 199475731 -18561427 - L1PA13 LINE L1 -2841 3956 3685 1894 123 36 11 chr3 199475731 199476034 -18561124 - AluSx SINE Alu 0 310 1 15782 181 35 17 chr3 199476034 199479510 -18557648 - L1PA13 LINE L1 -3112 3685 92 1655 163 4 0 chr3 199479886 199480150 -18557008 - AluJo SINE Alu -47 265 1 2392 90 3 0 chr3 199480215 199480516 -18556642 - AluSq SINE Alu -11 302 1 481 248 9 0 chr3 199480588 199480693 -18556465 + MLT2F LTR ERVL 35 140 -523 * 588 284 49 33 chr3 199480683 199480866 -18556292 + MLT2F LTR ERVL 241 426 -237 401 206 37 28 chr3 199481242 199481349 -18555809 - L1MC5 LINE L1 -49 7912 7805 1004 181 0 0 chr3 199481376 199481536 -18555622 - AluJb SINE Alu -20 292 133 688 201 17 17 chr3 199481537 199481711 -18555447 - L1MC5 LINE L1 -179 7782 7609 799 149 35 7 chr3 199482124 199482265 -18554893 + L1MB7 LINE L1 6031 6175 -9 3446 204 82 82 chr3 199482265 199482871 -18554287 + L1MB8 LINE L1 3751 4356 -1790 2363 89 0 19 chr3 199482871 199483187 -18553971 + AluSg SINE Alu 1 310 0 3446 204 82 82 chr3 199483187 199483346 -18553812 + L1MB8 LINE L1 4356 4514 -1632 1067 187 74 5 chr3 199483346 199483549 -18553609 - MER20 DNA MER1_type -1 218 2 3446 204 82 82 chr3 199483549 199483670 -18553488 + L1MB8 LINE L1 4514 4634 -1512 1984 159 0 0 chr3 199483670 199483959 -18553199 + AluSx SINE Alu 1 289 -23 3446 204 82 82 chr3 199483959 199484370 -18552788 + L1MB8 LINE L1 4633 5050 -1096 1532 206 18 0 chr3 199484371 199484657 -18552501 + AluJo SINE Alu 1 291 -21 427 177 65 40 chr3 199484657 199484781 -18552377 + L1MB8 LINE L1 5181 5307 -839 1588 192 134 14 chr3 199485639 199486071 -18551087 + LTR54B LTR ERV1 2 485 -13 4107 173 86 15 chr3 199486984 199487853 -18549305 - L1MB7 LINE L1 0 6184 5254 782 260 144 0 chr3 199488093 199488412 -18548746 + L1MC5 LINE L1 7537 7901 -60 2222 218 91 26 chr3 199488951 199489613 -18547545 + L1MB8 LINE L1 5452 6156 -22 234 174 0 0 chr3 199492413 199492459 -18544699 + CT-rich Low_complexity Low_complexity 1 46 0 198 0 0 0 chr3 199492834 199492856 -18544302 + (A)n Simple_repeat Simple_repeat 1 22 0 192 97 0 0 chr3 199492953 199492984 -18544174 + (TA)n Simple_repeat Simple_repeat 2 32 0 780 48 48 0 chr3 199495214 199495340 -18541818 + AluY SINE Alu 175 305 0 2264 106 0 3 chr3 199495995 199496298 -18540860 + AluSg SINE Alu 1 302 -8 1438 192 58 10 chr3 199496553 199496845 -18540313 + AluJo SINE Alu 1 306 -6 1179 185 32 19 chr3 199497666 199497882 -18539276 - MER20 DNA MER1_type 0 219 1 2174 114 7 0 chr3 199498487 199498793 -18538365 + AluSq SINE Alu 1 308 -5 2144 127 0 7 chr3 199498798 199499098 -18538060 + AluSx SINE Alu 1 298 -14 1781 175 13 3 chr3 199499157 199499465 -18537693 + AluJo SINE Alu 1 311 -1 209 339 19 50 chr3 199499608 199499868 -18537290 + L2 LINE L2 1433 1684 -1630 348 127 0 0 chr3 199499871 199499926 -18537232 - AluSc SINE Alu -5 294 240 1307 126 5 5 chr3 199500040 199500231 -18536927 - AluSq SINE Alu -122 191 1 2151 122 7 0 chr3 199500280 199500575 -18536583 - AluSx SINE Alu -13 299 3 454 272 21 78 chr3 199500765 199500956 -18536202 + MIR SINE MIR 21 200 -62 701 340 157 27 chr3 199501037 199501675 -18535483 + L3 LINE CR1 845 1565 -12 1822 173 3 0 chr3 199501697 199501998 -18535160 + AluJo SINE Alu 1 302 -10 1131 196 0 9 chr3 199502090 199502320 -18534838 + AluJo SINE Alu 85 312 0 1143 144 93 0 chr3 199502630 199502845 -18534313 - L1MC2 LINE L1 -9 6335 6101 739 193 33 0 chr3 199502868 199503018 -18534140 - L1MB2 LINE L1 -3 6168 6014 216 0 0 0 chr3 199503854 199503878 -18533280 + (A)n Simple_repeat Simple_repeat 1 24 0 370 164 0 0 chr3 199503895 199503956 -18533202 + MIR SINE MIR 92 152 -110 2197 149 91 10 chr3 199504064 199504481 -18532677 + MSTB2 LTR MaLR 1 451 -6 195 181 28 97 chr3 199504496 199504568 -18532590 + MIR SINE MIR 194 260 -2 228 143 0 0 chr3 199505266 199505308 -18531850 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 473 226 195 0 chr3 199506612 199506771 -18530387 + LTR50 LTR ERVL 4 193 -602 249 229 115 66 chr3 199506892 199507075 -18530083 + LTR50 LTR ERVL 479 670 -125 317 104 0 0 chr3 199507147 199507195 -18529963 - AluSp SINE Alu -15 288 241 1956 95 4 11 chr3 199507295 199507559 -18529599 - AluSp SINE Alu -51 262 1 451 248 128 7 chr3 199507648 199507789 -18529369 + MIR SINE MIR 105 262 0 188 283 0 0 chr3 199507982 199508028 -18529130 + MIR3 SINE MIR 160 205 -3 2391 114 0 0 chr3 199509111 199509418 -18527740 - AluSg SINE Alu -3 307 1 2200 116 0 0 chr3 199511304 199511607 -18525551 + AluSq SINE Alu 1 303 -10 279 0 0 0 chr3 199511608 199511639 -18525519 + (TA)n Simple_repeat Simple_repeat 1 31 0 268 282 24 48 chr3 199511713 199511837 -18525321 - MIR SINE MIR -56 152 32 952 114 0 0 chr3 199512556 199512688 -18524470 - FLAM_C SINE Alu -1 132 1 2223 105 3 0 chr3 199513085 199513379 -18523779 - AluSx SINE Alu -17 295 1 1523 165 25 63 chr3 199514452 199514768 -18522390 + AluJo SINE Alu 1 304 -8 651 273 159 23 chr3 199515522 199515742 -18521416 + MIR SINE MIR 2 251 -11 671 175 0 17 chr3 199515760 199515880 -18521278 + FLAM_C SINE Alu 1 118 -15 249 184 61 0 chr3 199516038 199516087 -18521071 - L2 LINE L2 -11 3261 3210 189 0 0 0 chr3 199516441 199516462 -18520696 + (T)n Simple_repeat Simple_repeat 1 21 0 1341 179 141 0 chr3 199516884 199517146 -18520012 + AluJo SINE Alu 1 299 -3 2223 89 3 7 chr3 199517148 199517441 -18519717 + AluSp SINE Alu 1 292 -21 460 109 11 87 chr3 199517462 199517554 -18519604 - Tigger7 DNA MER2_type -3 2484 2400 1199 188 72 8 chr3 199517573 199517823 -18519335 - Tigger7 DNA MER2_type -284 266 1 2236 98 7 0 chr3 199517916 199518212 -18518946 + AluSq SINE Alu 1 298 -15 2064 94 0 8 chr3 199518395 199518662 -18518496 + AluSx SINE Alu 37 301 -11 2432 80 0 0 chr3 199519565 199519865 -18517293 - AluY SINE Alu -11 300 1 234 116 0 0 chr3 199520072 199520115 -18517043 + (A)n Simple_repeat Simple_repeat 1 43 0 228 291 102 39 chr3 199520118 199520245 -18516913 + MIR3 SINE MIR 7 141 -67 180 0 0 0 chr3 199520245 199520265 -18516893 + (A)n Simple_repeat Simple_repeat 1 20 0 991 154 30 0 chr3 199570718 199570887 -18466271 + L1MA7 LINE L1 6115 6288 -3 1078 311 66 51 chr3 199570991 199571676 -18465482 + L2 LINE L2 1906 2600 -714 1350 149 0 5 chr3 199571676 199571877 -18465281 - AluJb SINE Alu -21 291 92 293 286 28 84 chr3 199571911 199572089 -18465069 + L2 LINE L2 2571 2738 -576 1606 201 3 7 chr3 199572415 199572703 -18464455 - AluJo SINE Alu -25 287 1 5248 123 11 39 chr3 199572729 199573947 -18463211 + L1MA3 LINE L1 4863 6063 -242 1619 80 0 24 chr3 199573947 199574160 -18462998 + AluSc SINE Alu 1 208 -101 1627 114 21 8 chr3 199574261 199574498 -18462660 + Tigger3(Golem) DNA MER2_type 2790 3029 0 2117 92 3 33 chr3 199574546 199574852 -18462306 + AluSg1 SINE Alu 1 297 -12 1797 163 10 13 chr3 199575039 199575339 -18461819 + AluJo SINE Alu 1 299 -13 2325 76 3 10 chr3 199576116 199576419 -18460739 - AluSp SINE Alu -12 301 1 2326 97 3 0 chr3 199576991 199577291 -18459867 - AluSc SINE Alu -8 301 1 1194 203 153 50 chr3 199577371 199577730 -18459428 - MSTD LTR MaLR 0 396 1 25 0 0 0 chr3 199578064 199578089 -18459069 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr3 199578363 199578384 -18458774 + AT_rich Low_complexity Low_complexity 1 21 0 1425 139 0 5 chr3 199578384 199578593 -18458565 - AluSg/x SINE Alu 0 310 103 1350 114 23 23 chr3 199578593 199578813 -18458345 - pTR5 LTR ERV1 -2046 392 173 337 221 12 0 chr3 199578817 199578903 -18458255 - LTR30 LTR ERV1 -80 642 556 4125 130 176 32 chr3 199578903 199579920 -18457238 - pTR5 LTR ERV1 -401 2037 743 298 63 25 0 chr3 199579920 199579966 -18457192 - AluSg/x SINE Alu -194 106 66 11056 110 165 70 chr3 199580125 199580726 -18456432 + Tigger1 DNA MER2_type 26 569 -1849 748 165 26 0 chr3 199580726 199580864 -18456294 + FLAM_C SINE Alu 2 142 0 11056 110 165 70 chr3 199580864 199582333 -18454825 + Tigger1 DNA MER2_type 569 2417 -1 413 227 13 0 chr3 199582785 199582860 -18454298 - Tigger3(Golem) DNA MER2_type -2948 81 6 3571 70 4 8 chr3 199582907 199583375 -18453783 - MER41A LTR ERV1 -88 466 1 12956 100 17 28 chr3 199583375 199584907 -18452251 - MER41A-int LTR ERV1 -2 5944 4396 2081 118 7 0 chr3 199584907 199585186 -18451972 + AluSx SINE Alu 5 285 -27 12956 100 17 28 chr3 199585186 199585920 -18451238 - MER41A-int LTR ERV1 -1550 4396 3655 221 0 35 0 chr3 199585920 199585949 -18451209 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 12956 100 17 28 chr3 199585949 199585991 -18451167 - MER41A-int LTR ERV1 -2291 3655 2857 2419 133 27 29 chr3 199585979 199586556 -18450602 - MER41B-int LTR ERV1 -4057 3759 1702 * 836 176 7 13 chr3 199586545 199586698 -18450460 - MER41B-int LTR ERV1 -5311 635 484 * 3290 109 40 2 chr3 199587233 199587708 -18449450 - MER41B-int LTR ERV1 -5453 493 1 652 110 0 0 chr3 199587777 199587868 -18449290 - MER41B LTR ERV1 0 635 545 27 0 0 0 chr3 199588161 199588188 -18448970 + AT_rich Low_complexity Low_complexity 1 27 0 2232 99 0 7 chr3 199588485 199588787 -18448371 + AluSx SINE Alu 1 300 -12 513 285 36 76 chr3 199589552 199589801 -18447357 + MIR SINE MIR 23 261 -1 2361 92 0 3 chr3 199589951 199590256 -18446902 - AluY SINE Alu -6 305 2 836 144 0 65 chr3 199590275 199590428 -18446730 - FLAM_C SINE Alu 0 143 1 2276 98 0 3 chr3 199591057 199591353 -18445805 + AluY SINE Alu 6 300 -11 299 238 131 68 chr3 199591756 199591959 -18445199 + MIR SINE MIR 1 213 -49 254 171 14 43 chr3 199592059 199592129 -18445029 - L1ME4a LINE L1 -3 6118 6051 254 250 92 33 chr3 199592212 199592332 -18444826 - L1ME4a LINE L1 -25 6096 5970 616 171 0 32 chr3 199592444 199592567 -18444591 - MER95 LTR ERV -311 120 2 927 142 47 104 chr3 199592569 199592781 -18444377 - L1MC4 LINE L1 -527 7515 7316 5973 110 29 5 chr3 199593239 199593284 -18443874 - L1PA16 LINE L1 -13 6153 6111 2354 96 0 3 chr3 199593284 199593598 -18443560 - AluSq SINE Alu 0 313 1 5973 110 29 5 chr3 199593598 199594687 -18442471 - L1PA16 LINE L1 -55 6111 5018 2433 77 0 3 chr3 199594700 199595000 -18442158 - AluY SINE Alu -12 299 1 1752 201 0 0 chr3 199595000 199595329 -18441829 - L1P LINE L1 -1048 5098 4770 404 417 18 6 chr3 199595380 199595548 -18441610 - MER91A DNA MER1_type 0 196 27 228 167 0 0 chr3 199595561 199595597 -18441561 + MIR SINE MIR 160 195 -67 2356 98 0 0 chr3 199595609 199595906 -18441252 - AluSx SINE Alu -15 297 1 843 178 108 32 chr3 199596523 199596708 -18440450 - MLT1L LTR MaLR -1 614 416 611 258 22 11 chr3 199596841 199597019 -18440139 - L1MC5 LINE L1 -63 7898 7719 272 180 66 0 chr3 199597035 199597096 -18440062 + MER21B LTR ERV1 409 473 -390 841 175 9 99 chr3 199597099 199597250 -18439908 + AluJ SINE Alu 1 129 -183 2410 77 0 0 chr3 199597250 199597547 -18439611 + AluSc SINE Alu 1 297 -12 841 175 9 99 chr3 199597547 199597606 -18439552 + AluJ SINE Alu 129 192 -120 2374 40 11 0 chr3 199597606 199597883 -18439275 + L1PA5 LINE L1 5874 6153 -1 708 217 0 0 chr3 199597903 199598023 -18439135 + AluJ SINE Alu 177 296 -16 1632 85 0 0 chr3 199598123 199598322 -18438836 + AluY SINE Alu 93 291 -20 2307 99 3 13 chr3 199598659 199598972 -18438186 + AluSx SINE Alu 1 310 -2 2865 100 8 0 chr3 199599104 199599464 -18437694 - THE1B LTR MaLR 0 364 2 2103 228 77 43 chr3 199599513 199600163 -18436995 + L1MCb LINE L1 3 674 -5371 687 133 52 59 chr3 199600166 199600301 -18436857 + MLT1A1 LTR MaLR 1 134 -231 208 262 107 12 chr3 199600301 199600385 -18436773 + L2 LINE L2 3203 3294 -19 3054 35 0 3 chr3 199600389 199600735 -18436423 + L1PA5 LINE L1 5806 6150 -4 2598 169 200 36 chr3 199601079 199601855 -18435303 + L1MCb LINE L1 1259 2161 -4403 2144 108 3 10 chr3 199601991 199602288 -18434870 - AluSx SINE Alu -16 296 2 1700 169 0 46 chr3 199602674 199602981 -18434177 - AluJo SINE Alu -19 293 1 244 257 0 0 chr3 199603186 199603256 -18433902 - L1M4 LINE L1 -982 5164 5095 231 36 0 0 chr3 199603291 199603319 -18433839 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 1534 164 36 11 chr3 199603430 199603704 -18433454 - AluJb SINE Alu -18 294 14 250 196 0 39 chr3 199604560 199604611 -18432547 + MER5B DNA MER1_type 3 51 -127 2327 108 0 13 chr3 199604636 199604950 -18432208 - AluSg SINE Alu 0 310 1 2357 87 0 10 chr3 199604956 199605254 -18431904 - AluSx SINE Alu -17 295 1 342 247 140 0 chr3 199605254 199605347 -18431811 - MER5B DNA MER1_type -45 133 28 354 161 0 0 chr3 199605347 199605403 -18431755 - Tigger5 DNA MER2_type 0 2323 2268 394 231 13 0 chr3 199605409 199605487 -18431671 - Tigger5 DNA MER2_type -2244 79 1 323 198 21 52 chr3 199606100 199606196 -18430962 + L1MA8 LINE L1 6174 6266 -25 2189 161 16 19 chr3 199608017 199608383 -18428775 + MLT1A1 LTR MaLR 1 365 0 2012 138 3 0 chr3 199609073 199609369 -18427789 + AluJo SINE Alu 1 297 -15 349 207 69 0 chr3 199609398 199609485 -18427673 + MIR SINE MIR 77 169 -93 2344 89 0 3 chr3 199609501 199609804 -18427354 + AluY SINE Alu 1 302 -9 224 263 118 0 chr3 199609878 199609954 -18427204 - MIR SINE MIR -32 230 146 1755 161 21 4 chr3 199609954 199610238 -18426920 - AluJo SINE Alu 0 294 6 436 313 53 15 chr3 199610275 199610406 -18426752 - MIR SINE MIR -123 139 4 1012 248 35 0 chr3 199612606 199612692 -18424466 + Charlie1 DNA MER1_type 2 84 -2677 2223 118 3 0 chr3 199612692 199612996 -18424162 + AluSp SINE Alu 1 305 -8 1012 248 35 0 chr3 199612996 199613139 -18424019 + Charlie1 DNA MER1_type 84 239 -2522 4707 146 45 39 chr3 199613146 199614035 -18423123 + L1MB3 LINE L1 5279 6172 -11 433 146 111 56 chr3 199614035 199614179 -18422979 + Charlie1 DNA MER1_type 2610 2761 0 1734 171 7 7 chr3 199614757 199615062 -18422096 - AluJb SINE Alu -3 309 5 2287 96 3 3 chr3 199615281 199615582 -18421576 - AluSx SINE Alu -11 301 1 1367 142 29 46 chr3 199615951 199616191 -18420967 - MER46A DNA MER2_type 0 236 1 443 319 35 77 chr3 199616223 199616334 -18420824 + L3 LINE CR1 1277 1391 -186 2259 31 8 0 chr3 199616334 199616588 -18420570 - L1PA5 LINE L1 -2 6152 5897 443 319 35 77 chr3 199616588 199616789 -18420369 + L3 LINE CR1 1391 1576 -1 2226 108 0 7 chr3 199617036 199617342 -18419816 - AluSc SINE Alu -5 304 1 1148 60 0 0 chr3 199617342 199617476 -18419682 - AluYb8 SINE Alu -184 134 1 195 333 0 43 chr3 199618346 199618415 -18418743 + L3 LINE CR1 1500 1565 -12 231 88 0 0 chr3 199618515 199618549 -18418609 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 702 291 146 26 chr3 199618550 199618935 -18418223 - L2 LINE L2 -12 3301 2871 247 283 17 0 chr3 199620260 199620320 -18416838 + MIR SINE MIR 88 148 -60 2355 89 7 3 chr3 199620328 199620630 -18416528 + AluSq SINE Alu 11 313 0 1871 148 3 40 chr3 199620932 199621230 -18415928 + AluSx SINE Alu 1 287 -25 210 37 0 0 chr3 199621233 199621260 -18415898 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 883 234 74 16 chr3 199621360 199621604 -18415554 + MIR SINE MIR 1 258 -4 22 35 0 0 chr3 199622620 199622649 -18414509 + AT_rich Low_complexity Low_complexity 1 29 0 357 247 91 25 chr3 199623176 199623330 -18413828 + MIR SINE MIR 8 261 -1 1157 48 41 0 chr3 199623337 199623482 -18413676 + L1P3 LINE L1 5588 5738 -416 2194 93 11 0 chr3 199623511 199623791 -18413367 + AluSq SINE Alu 1 283 -30 238 162 0 0 chr3 199624858 199624895 -18412263 - MER5C DNA MER1_type 0 324 288 214 239 90 0 chr3 199624939 199625006 -18412152 - MER5C DNA MER1_type -200 124 52 249 33 0 0 chr3 199625410 199625440 -18411718 + (TTG)n Simple_repeat Simple_repeat 1 30 0 712 225 0 0 chr3 199625441 199625583 -18411575 - L1PA16 LINE L1 -20 6146 6005 2133 94 45 0 chr3 199625596 199625883 -18411275 - AluSq SINE Alu -13 300 1 1042 235 64 4 chr3 199626559 199626840 -18410318 - L1ME1 LINE L1 -5 6161 5864 1417 111 0 11 chr3 199627005 199627194 -18409964 - AluSx SINE Alu -125 187 1 5689 165 94 27 chr3 199627215 199628418 -18408740 + L1MCa LINE L1 31 1314 -5112 540 129 59 0 chr3 199628418 199628503 -18408655 - Tigger3(Golem) DNA MER2_type -169 2860 2771 * 581 206 135 0 chr3 199628499 199628625 -18408533 - Tigger3(Golem) DNA MER2_type -2886 143 1 4114 214 49 20 chr3 199628629 199629828 -18407330 + L1MCa LINE L1 2259 3509 -2917 1870 112 4 11 chr3 199629828 199630095 -18407063 + AluSc SINE Alu 45 309 0 4114 214 49 20 chr3 199630095 199630329 -18406829 + L1MCa LINE L1 3509 3735 -2691 1423 178 0 4 chr3 199630331 199630562 -18406596 + AluJo SINE Alu 1 230 -82 851 127 22 30 chr3 199630565 199630699 -18406459 + FLAM_C SINE Alu 1 133 0 242 273 26 0 chr3 199630699 199630776 -18406382 + L1MCa LINE L1 3728 3806 -2620 6631 144 26 19 chr3 199630803 199630915 -18406243 + L1MC1 LINE L1 5071 5181 -1152 2285 107 0 10 chr3 199630915 199631225 -18405933 + AluSx SINE Alu 1 307 -5 6631 144 26 19 chr3 199631225 199632358 -18404800 + L1MC1 LINE L1 5181 6327 -6 588 184 35 103 chr3 199632394 199632568 -18404590 - MER112 DNA MER1_type -98 162 1 1300 151 9 14 chr3 199632806 199633018 -18404140 + Tigger3(Golem) DNA MER2_type 1 211 -2818 2541 44 3 7 chr3 199633021 199633319 -18403839 + AluY SINE Alu 1 297 -14 1359 122 0 0 chr3 199633326 199633507 -18403651 + AluSq SINE Alu 1 181 -132 1574 175 13 45 chr3 199634337 199634504 -18402654 - AluJo SINE Alu -13 299 145 1924 151 7 7 chr3 199634504 199634803 -18402355 - AluJo SINE Alu -13 299 1 1574 175 13 45 chr3 199634803 199634944 -18402214 - AluJo SINE Alu -167 145 1 2450 167 97 21 chr3 199635327 199635855 -18401303 - L1MB4 LINE L1 -1 6179 5612 4105 177 17 3 chr3 199636128 199636819 -18400339 - MER44D DNA MER2_type -32 573 1 6563 82 30 71 chr3 199637359 199638180 -18398978 - L1PA14 LINE L1 -2 6159 5334 2285 92 3 3 chr3 199638180 199638474 -18398684 - AluY SINE Alu -17 294 1 6563 82 30 71 chr3 199638474 199638590 -18398568 - L1PA14 LINE L1 -827 5334 5215 2414 212 111 26 chr3 199638675 199639359 -18397799 - L1ME1 LINE L1 -2 6164 5423 * 4289 160 39 40 chr3 199639352 199640223 -18396935 - L1MB8 LINE L1 -1 6177 5308 2681 202 81 50 chr3 199640227 199640668 -18396490 - L1MB8 LINE L1 -976 5170 4691 2141 115 0 3 chr3 199640668 199640954 -18396204 - AluSx SINE Alu -26 286 2 2681 202 81 50 chr3 199640954 199641319 -18395839 - L1MB8 LINE L1 -1455 4691 4339 2585 119 5 24 chr3 199641387 199641758 -18395400 - THE1B LTR MaLR 0 364 1 12742 84 8 1 chr3 199641758 199643324 -18393834 - THE1B-int LTR MaLR 0 1580 3 2194 141 54 25 chr3 199643326 199643680 -18393478 - THE1B LTR MaLR 0 364 1 4100 113 58 8 chr3 199644223 199644808 -18392350 + LTR18B LTR ERVL 1 614 0 183 325 0 26 chr3 199644949 199645026 -18392132 + MER5B DNA MER1_type 6 80 -98 590 258 17 39 chr3 199645037 199645215 -18391943 - L1ME3A LINE L1 -13 6157 5984 224 200 60 0 chr3 199645220 199645270 -18391888 + MER5B DNA MER1_type 117 169 -9 1561 168 7 43 chr3 199645331 199645634 -18391524 + AluJo SINE Alu 1 292 -20 22 56 0 0 chr3 199646120 199646156 -18391002 + AT_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr3 199646453 199646485 -18390673 + AT_rich Low_complexity Low_complexity 1 32 0 288 201 100 89 chr3 199646623 199646710 -18390448 - MER5A DNA MER1_type -26 163 72 667 200 75 0 chr3 199646710 199646830 -18390328 - FLAM_A SINE Alu -4 129 1 288 201 100 89 chr3 199646830 199646900 -18390258 - MER5A DNA MER1_type -117 72 4 1469 172 114 0 chr3 199647274 199647547 -18389611 + AluJo SINE Alu 1 304 -8 479 239 58 84 chr3 199647853 199648017 -18389141 + L2 LINE L2 2642 2800 -514 1747 146 7 4 chr3 199648017 199648292 -18388866 + AluJb SINE Alu 35 310 -2 479 239 58 84 chr3 199648292 199648353 -18388805 + L2 LINE L2 2800 2861 -453 298 220 216 24 chr3 199648363 199648495 -18388663 + LTR50 LTR ERVL 23 171 -602 344 293 85 27 chr3 199648623 199648811 -18388347 + LTR33A LTR ERVL 325 523 0 332 288 96 8 chr3 199648812 199648937 -18388221 + L2 LINE L2 2856 2991 -322 373 235 209 0 chr3 199649881 199649996 -18387162 - L2 LINE L2 0 3272 3134 1015 73 52 22 chr3 199650156 199650292 -18386866 + AluY SINE Alu 1 140 -171 607 115 0 0 chr3 199650393 199650471 -18386687 + AluSg/x SINE Alu 199 276 -36 271 0 25 25 chr3 199650477 199650517 -18386641 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 412 238 50 20 chr3 199650519 199650669 -18386489 - MIR SINE MIR -63 199 47 2044 108 13 45 chr3 199650670 199650984 -18386174 + AluY SINE Alu 1 304 -7 265 297 14 0 chr3 199651029 199651103 -18386055 + MER5C DNA MER1_type 5 79 -245 2173 116 0 0 chr3 199651783 199652103 -18385055 - AluSq SINE Alu 0 320 1 680 279 65 32 chr3 199652103 199652350 -18384808 - MIR SINE MIR 0 262 8 2333 90 3 6 chr3 199652947 199653259 -18383899 - AluSx SINE Alu -1 311 1 2459 84 0 0 chr3 199653912 199654223 -18382935 + AluY SINE Alu 1 311 0 213 347 51 10 chr3 199654358 199654456 -18382702 + MIR3 SINE MIR 8 109 -99 233 159 0 72 chr3 199654458 199654527 -18382631 - MER106B DNA MER1_type 0 1059 996 570 214 17 17 chr3 199654537 199654654 -18382504 - MER106B DNA MER1_type -940 119 3 216 337 34 34 chr3 199654667 199654756 -18382402 + MIR3 SINE MIR 115 203 -5 2389 109 0 0 chr3 199654964 199655275 -18381883 + AluSx SINE Alu 1 311 -1 239 234 0 0 chr3 199655915 199655962 -18381196 + GA-rich Low_complexity Low_complexity 2 48 0 848 11 0 0 chr3 199656081 199656173 -18380985 + AluYb8 SINE Alu 213 304 -14 1359 186 34 7 chr3 199656307 199656576 -18380582 - AluJo SINE Alu -8 304 29 1571 184 30 43 chr3 199656309 199656614 -18380544 - AluJo SINE Alu 0 302 2 2311 68 0 46 chr3 199656814 199657139 -18380019 - AluY SINE Alu -1 310 1 678 249 138 9 chr3 199657261 199657478 -18379680 - MIR SINE MIR -12 250 6 199 276 13 53 chr3 199657816 199657892 -18379266 + MIR SINE MIR 49 121 -141 322 303 25 17 chr3 199658814 199658933 -18378225 + L1M4 LINE L1 2840 2959 -3187 285 285 38 19 chr3 199659428 199659586 -18377572 + L1M4 LINE L1 3592 3752 -2394 4457 134 112 123 chr3 199659623 199660920 -18376238 + pTR5 LTR ERV1 741 2343 -95 3627 67 100 2 chr3 199661084 199661592 -18375566 + LTR6B LTR ERV1 1 558 0 788 163 70 47 chr3 199661592 199661764 -18375394 + MER21B LTR ERV1 669 844 -19 717 285 13 26 chr3 199661814 199662042 -18375116 - HERV16 LTR ERVL -3183 1813 1589 1036 318 60 16 chr3 199662250 199662684 -18374474 - HERV16 LTR ERVL -3718 1278 826 428 166 262 69 chr3 199662684 199662712 -18374446 - MER51A LTR ERV1 0 640 619 2284 91 0 0 chr3 199662712 199663010 -18374148 + AluSq SINE Alu 2 299 -14 428 166 262 69 chr3 199663010 199663167 -18373991 - MER51A LTR ERV1 -21 619 184 1004 346 60 26 chr3 199663697 199664046 -18373112 - HERV16 LTR ERVL -4170 826 490 1793 153 0 3 chr3 199664046 199664346 -18372812 - AluJo SINE Alu -13 299 1 1004 346 60 26 chr3 199664346 199664793 -18372365 - HERV16 LTR ERVL -4506 490 3 956 260 71 26 chr3 199664798 199665148 -18372010 - LTR16B LTR ERVL -3 461 96 1147 103 0 0 chr3 199665166 199665322 -18371836 - AluSg/x SINE Alu -21 291 136 2137 90 7 0 chr3 199665325 199665613 -18371545 - AluSc SINE Alu -19 290 1 1873 148 0 0 chr3 199665867 199666145 -18371013 - AluSx SINE Alu -28 284 7 1857 142 4 0 chr3 199666328 199666609 -18370549 - AluSx SINE Alu -30 282 1 537 243 43 65 chr3 199667302 199667352 -18369806 + MLT1F LTR MaLR 1 51 -491 1352 224 133 17 chr3 199667352 199667704 -18369454 + MSTD LTR MaLR 2 394 -2 537 243 43 65 chr3 199667704 199667838 -18369320 + MLT1F LTR MaLR 51 181 -361 228 62 0 0 chr3 199667840 199667854 -18369304 + (TC)n Simple_repeat Simple_repeat 1 14 -18 2162 93 0 7 chr3 199667854 199668145 -18369013 - AluSg SINE Alu -21 289 1 228 62 0 0 chr3 199668145 199668162 -18368996 + (TC)n Simple_repeat Simple_repeat 13 32 0 228 294 29 0 chr3 199668198 199668266 -18368892 + L2 LINE L2 3203 3272 0 388 330 202 5 chr3 199669202 199669405 -18367753 + MIR SINE MIR 20 262 0 2260 97 0 0 chr3 199669588 199669887 -18367271 + AluSq SINE Alu 1 299 -14 379 318 162 0 chr3 199670598 199670746 -18366412 + MIR SINE MIR 20 191 -71 2319 56 3 0 chr3 199670862 199671174 -18365984 + AluSp SINE Alu 1 313 0 363 238 241 50 chr3 199671682 199672001 -18365157 + HAL1 LINE L1 2037 2416 -91 1056 165 87 0 chr3 199672073 199672279 -18364879 - AluJo SINE Alu -88 224 1 328 271 232 5 chr3 199672354 199672561 -18364597 + L1MC4a LINE L1 5589 5842 -1966 243 188 0 0 chr3 199672846 199672894 -18364264 + (TG)n Simple_repeat Simple_repeat 1 48 0 1093 213 78 99 chr3 199672930 199673454 -18363704 - HAL1b LINE L1 -4 1344 832 1523 170 32 3 chr3 199673454 199673736 -18363422 - AluJo SINE Alu -20 292 3 1093 213 78 99 chr3 199673736 199673789 -18363369 - HAL1b LINE L1 -516 832 779 235 254 0 0 chr3 199674086 199674141 -18363017 - HAL1b LINE L1 -556 792 738 2204 76 0 54 chr3 199674161 199674476 -18362682 + AluY SINE Alu 1 298 -13 252 312 159 13 chr3 199674491 199674648 -18362510 - L1MC4a LINE L1 -1658 6150 5971 805 259 45 0 chr3 199674664 199674907 -18362251 - L1MC4a LINE L1 -1905 5903 5650 1277 147 0 5 chr3 199674957 199675154 -18362004 - AluJo SINE Alu -116 196 1 309 222 13 124 chr3 199675154 199675307 -18361851 - HAL1b LINE L1 -665 683 548 279 125 0 0 chr3 199675307 199675355 -18361803 + AluSc SINE Alu 252 299 0 959 255 98 35 chr3 199675355 199675837 -18361321 - HAL1b LINE L1 -792 556 45 2039 165 42 21 chr3 199676075 199676457 -18360701 + MLT1B LTR MaLR 1 390 0 2430 63 0 0 chr3 199676467 199676769 -18360389 - AluY SINE Alu -9 302 1 286 266 221 32 chr3 199679429 199679583 -18357575 - MER5A DNA MER1_type 0 189 7 1766 161 0 3 chr3 199679679 199679965 -18357193 - AluSx SINE Alu -27 285 1 180 378 13 26 chr3 199680451 199680607 -18356551 - L2 LINE L2 -729 2585 2432 2452 65 3 0 chr3 199682676 199682983 -18354175 + AluSp SINE Alu 1 308 -5 890 153 0 0 chr3 199683171 199683308 -18353850 + FRAM SINE Alu 1 137 -39 189 0 0 0 chr3 199683317 199683338 -18353820 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1905 135 3 3 chr3 199683355 199683658 -18353500 + AluSq SINE Alu 11 313 0 2053 118 0 10 chr3 199684133 199684430 -18352728 - AluSx SINE Alu -16 296 3 704 239 128 72 chr3 199684959 199685414 -18351744 + L2 LINE L2 2673 3141 -172 2063 123 7 0 chr3 199685417 199685718 -18351440 + AluSx SINE Alu 1 303 -9 1499 139 100 42 chr3 199685740 199686050 -18351108 - MER44D DNA MER2_type 0 609 12 533 248 50 25 chr3 199686063 199686224 -18350934 + L2 LINE L2 3149 3313 0 253 354 0 10 chr3 199686306 199686405 -18350753 - MIR3 SINE MIR -35 173 76 2197 106 0 13 chr3 199686437 199686749 -18350409 + AluSx SINE Alu 1 308 -4 286 249 158 65 chr3 199688084 199688284 -18348874 - MIR SINE MIR -25 237 1 258 200 78 44 chr3 199688564 199688654 -18348504 - L2 LINE L2 -564 2750 2658 354 293 27 41 chr3 199688792 199688939 -18348219 - MIR SINE MIR -54 208 64 580 189 145 25 chr3 199689060 199689219 -18347939 - MER45A DNA AcHobo 0 178 1 1484 171 0 15 chr3 199689428 199689702 -18347456 - AluJo SINE Alu -21 291 22 921 179 49 0 chr3 199689857 199690019 -18347139 + LTR47A LTR ERVL 197 366 -86 182 237 172 95 chr3 199690715 199690884 -18346274 - L2 LINE L2 -181 3091 2910 1257 157 5 9 chr3 199691011 199691228 -18345930 + AluJb SINE Alu 81 296 -16 397 358 28 6 chr3 199691604 199691783 -18345375 - MIR SINE MIR -6 256 74 2063 114 0 7 chr3 199691882 199692189 -18344969 + AluSq SINE Alu 1 305 -8 223 375 19 10 chr3 199692200 199692304 -18344854 + L2 LINE L2 3168 3272 0 1033 228 14 5 chr3 199692421 199692636 -18344522 + MER20 DNA MER1_type 3 219 0 1368 265 79 36 chr3 199692884 199693396 -18343762 - L1MEc LINE L1 -4052 2344 1796 372 43 0 0 chr3 199693396 199693442 -18343716 + (TG)n Simple_repeat Simple_repeat 2 47 0 1368 265 79 36 chr3 199693442 199693590 -18343568 - L1MEc LINE L1 -4600 1796 1656 773 152 8 8 chr3 199693593 199693725 -18343433 - FLAM_C SINE Alu -1 132 1 284 179 13 0 chr3 199693895 199693973 -18343185 + (CA)n Simple_repeat Simple_repeat 2 80 0 198 261 46 31 chr3 199694419 199694484 -18342674 + MIR SINE MIR 50 115 -147 457 314 63 36 chr3 199694540 199694763 -18342395 - MIR SINE MIR -31 231 3 212 208 19 19 chr3 199695023 199695076 -18342082 - MIR3 SINE MIR -11 197 145 2295 98 0 0 chr3 199695167 199695473 -18341685 + AluSc SINE Alu 1 306 -3 2049 103 0 3 chr3 199696116 199696426 -18340732 - AluSx SINE Alu 0 309 1 2144 114 0 0 chr3 199697220 199697518 -18339640 + AluSg SINE Alu 1 298 -12 663 207 178 28 chr3 199697523 199697736 -18339422 + L1MD2 LINE L1 6113 6357 -2 281 273 40 30 chr3 199697762 199697861 -18339297 + MIR SINE MIR 92 191 -71 26 0 0 0 chr3 199700323 199700349 -18336809 + AT_rich Low_complexity Low_complexity 1 26 0 401 265 86 30 chr3 199700415 199700592 -18336566 - MIR SINE MIR -35 227 40 399 276 79 13 chr3 199700660 199700812 -18336346 + MIR SINE MIR 95 256 -6 334 314 27 80 chr3 199701158 199701282 -18335876 - MER5A DNA MER1_type 0 189 77 2077 114 3 3 chr3 199701282 199701579 -18335579 - AluSq SINE Alu -14 299 3 334 314 27 80 chr3 199701579 199701642 -18335516 - MER5A DNA MER1_type -112 77 12 266 264 71 114 chr3 199702118 199702179 -18334979 - L2 LINE L2 -214 3058 2996 2206 103 0 0 chr3 199702179 199702480 -18334678 + AluSx SINE Alu 1 301 -11 266 264 71 114 chr3 199702480 199702558 -18334600 - L2 LINE L2 -276 2996 2925 1739 81 4 4 chr3 199703585 199703821 -18333337 + AluSc SINE Alu 63 298 -11 186 43 0 0 chr3 199703821 199703844 -18333314 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 189 0 0 0 chr3 199703843 199703864 -18333294 + (CA)n Simple_repeat Simple_repeat 2 22 0 1666 83 25 0 chr3 199703864 199704105 -18333053 + L1MA3 LINE L1 6059 6305 0 27 29 0 0 chr3 199704105 199704139 -18333019 + AT_rich Low_complexity Low_complexity 1 34 0 941 135 119 98 chr3 199704798 199705042 -18332116 - AluJo SINE Alu -7 305 57 368 253 185 31 chr3 199705288 199705450 -18331708 - MIR SINE MIR 0 262 76 2348 69 3 3 chr3 199705659 199705962 -18331196 - AluSq SINE Alu -10 303 1 265 347 64 8 chr3 199705978 199706133 -18331025 - MIR SINE MIR -41 167 8 2446 75 0 0 chr3 199707129 199707436 -18329722 + AluSg SINE Alu 1 307 -3 262 315 14 0 chr3 199707519 199707592 -18329566 - MIR3 SINE MIR -17 191 118 551 266 5 94 chr3 199709089 199709152 -18328006 - L3 LINE CR1 -1 1576 1509 2101 101 10 0 chr3 199709152 199709440 -18327718 - AluSg SINE Alu -15 295 5 551 266 5 94 chr3 199709440 199709568 -18327590 - L3 LINE CR1 -68 1509 1402 228 167 0 62 chr3 199709623 199709671 -18327487 + Cheshire DNA MER1_type 721 765 -1655 180 342 13 0 chr3 199709698 199709777 -18327381 + L2 LINE L2 3005 3084 -229 323 326 171 0 chr3 199709930 199710059 -18327099 + L2 LINE L2 3122 3272 0 226 351 0 0 chr3 199710072 199710146 -18327012 + MIR SINE MIR 139 212 -50 2005 120 0 3 chr3 199710312 199710628 -18326530 + AluSq SINE Alu 1 315 0 423 322 73 30 chr3 199710892 199711125 -18326033 - MIR SINE MIR 0 262 20 180 0 0 0 chr3 199712720 199712740 -18324418 + (CACCC)n Simple_repeat Simple_repeat 3 22 0 1726 172 20 0 chr3 199713136 199713438 -18323720 - AluJb SINE Alu -4 308 1 332 306 75 37 chr3 199713499 199713707 -18323451 - L2 LINE L2 -268 3004 2790 880 271 48 73 chr3 199713896 199714416 -18322742 + MLT1J LTR MaLR 1 507 -4 199 373 13 0 chr3 199714426 199714501 -18322657 - MIR SINE MIR -57 151 76 691 223 10 82 chr3 199714597 199714643 -18322515 + MIR SINE MIR 5 53 -209 778 160 15 0 chr3 199714643 199714774 -18322384 - FLAM_C SINE Alu 0 133 1 691 223 10 82 chr3 199714774 199714933 -18322225 + MIR SINE MIR 53 195 -67 732 248 143 13 chr3 199714951 199715181 -18321977 + MIR SINE MIR 3 262 0 463 298 42 6 chr3 199715305 199715473 -18321685 - MIR SINE MIR -41 221 48 2146 105 16 0 chr3 199715628 199715934 -18321224 - AluSq SINE Alu -2 311 1 2341 66 0 7 chr3 199717388 199717690 -18319468 - AluSg SINE Alu -10 300 1 2009 56 48 0 chr3 199717701 199718013 -18319145 - AluSc SINE Alu 0 325 1 232 229 0 0 chr3 199718284 199718332 -18318826 + MIR SINE MIR 106 153 -109 180 152 0 0 chr3 199718348 199718381 -18318777 + T-rich Low_complexity Low_complexity 1 33 0 2054 105 26 3 chr3 199718383 199718688 -18318470 - AluSx SINE Alu 0 312 1 1689 153 17 3 chr3 199718740 199719035 -18318123 - AluJb SINE Alu -13 299 1 497 296 136 25 chr3 199719434 199719633 -18317525 - MIR SINE MIR -28 234 14 2306 68 3 3 chr3 199719635 199719942 -18317216 + AluY SINE Alu 1 307 -4 442 197 0 0 chr3 199719946 199720017 -18317141 - MER21B LTR ERV1 -774 89 19 361 194 46 65 chr3 199720015 199720123 -18317035 - MER21B LTR ERV1 -757 106 1 * 1719 182 0 3 chr3 199720154 199720462 -18316696 + AluJb SINE Alu 6 312 0 1233 241 50 45 chr3 199720466 199720851 -18316307 - L1MEc LINE L1 -2748 4193 3847 2216 78 0 0 chr3 199720851 199721132 -18316026 + AluSq SINE Alu 28 308 -5 1233 241 50 45 chr3 199721132 199721464 -18315694 - L1MEc LINE L1 -3094 3847 3518 1634 146 75 45 chr3 199721471 199721591 -18315567 - MLT1B LTR MaLR -3 387 272 2223 119 0 0 chr3 199721591 199721903 -18315255 - AluSx SINE Alu 0 312 1 1634 146 75 45 chr3 199721903 199722117 -18315041 - MLT1B LTR MaLR -118 272 43 2546 86 14 25 chr3 199722117 199722476 -18314682 - THE1A LTR MaLR 0 355 1 10467 81 107 1 chr3 199722476 199723904 -18313254 - THE1A-int LTR MaLR 0 1580 1 3035 48 3 0 chr3 199723904 199724258 -18312900 - THE1A LTR MaLR 0 355 1 333 109 0 0 chr3 199724259 199724305 -18312853 - MLT1B LTR MaLR -421 46 1 458 194 0 65 chr3 199724306 199724411 -18312747 - L1MEc LINE L1 -3420 3521 3424 3178 204 24 81 chr3 199724411 199725438 -18311720 + LTR5 LTR ERVK 1 969 0 458 194 0 65 chr3 199725438 199725456 -18311702 - L1MEc LINE L1 -3517 3424 3406 1107 199 40 0 chr3 199725469 199725670 -18311488 + Tigger5 DNA MER2_type 12 220 -2103 * 1347 153 5 0 chr3 199725666 199725882 -18311276 + Tigger5 DNA MER2_type 2058 2274 -49 315 211 0 0 chr3 199725875 199725927 -18311231 - AluSc SINE Alu -116 183 132 * 664 221 25 0 chr3 199725927 199726049 -18311109 - AluJo/FLAM SINE Alu -177 125 1 361 278 79 16 chr3 199726050 199726176 -18310982 - L1MEc LINE L1 -4463 2659 2526 325 293 45 41 chr3 199726130 199726523 -18310635 + L1MC4 LINE L1 2120 6703 -1339 * 259 227 76 0 chr3 199726527 199726593 -18310565 - L1MEc LINE L1 -4565 2557 2487 557 277 151 34 chr3 199726594 199726886 -18310272 - L1MEc LINE L1 -5244 1179 854 985 101 7 0 chr3 199727204 199727342 -18309816 + AluSc SINE Alu 154 292 -17 288 0 0 0 chr3 199728454 199728486 -18308672 + (CA)n Simple_repeat Simple_repeat 2 33 0 6972 23 0 0 chr3 199728585 199729371 -18307787 - L1PA3 LINE L1 -3 6152 5367 598 56 0 0 chr3 199729371 199729443 -18307715 - U3 snRNA snRNA -145 72 1 427 303 113 13 chr3 199730094 199730332 -18306826 + L2 LINE L2 2906 3167 -105 516 16 0 0 chr3 199730425 199730486 -18306672 + (TCCA)n Simple_repeat Simple_repeat 1 61 0 777 239 186 14 chr3 199731140 199731598 -18305560 + LTR50 LTR ERVL 236 793 -2 1937 105 77 0 chr3 199731630 199731740 -18305418 + AluSq SINE Alu 1 101 -212 1551 97 0 60 chr3 199731740 199731988 -18305170 + AluY SINE Alu 67 299 -12 1937 105 77 0 chr3 199731988 199732163 -18304995 + AluSq SINE Alu 101 308 -5 2296 35 7 14 chr3 199732643 199732953 -18304205 + AluY SINE Alu 1 308 0 707 181 40 102 chr3 199733359 199733585 -18303573 + MER20 DNA MER1_type 2 213 -6 211 333 11 11 chr3 199734917 199735010 -18302148 + CT-rich Low_complexity Low_complexity 6 98 0 200 284 236 0 chr3 199735191 199735318 -18301840 - MIR SINE MIR -16 246 90 208 242 42 42 chr3 199737202 199737297 -18299861 - MIR3 SINE MIR -7 201 107 1901 131 10 3 chr3 199737453 199737751 -18299407 - AluJb SINE Alu -12 300 1 258 32 0 0 chr3 199738313 199738344 -18298814 + (TG)n Simple_repeat Simple_repeat 2 32 0 194 270 284 0 chr3 199738870 199738944 -18298214 - L2 LINE L2 -44 3228 3134 198 0 0 0 chr3 199739192 199739214 -18297944 + (CA)n Simple_repeat Simple_repeat 2 23 0 2274 87 0 10 chr3 199739569 199739879 -18297279 - AluSc SINE Alu -2 307 1 281 250 148 70 chr3 199740061 199740189 -18296969 - MIR SINE MIR -36 226 89 1269 201 10 71 chr3 199740929 199741111 -18296047 - AluJo SINE Alu -22 290 133 2068 95 0 7 chr3 199741111 199741394 -18295764 + AluSq SINE Alu 7 287 -26 1269 201 10 71 chr3 199741394 199741520 -18295638 - AluJo SINE Alu -179 133 1 282 210 126 25 chr3 199741553 199741672 -18295486 + L1ME4a LINE L1 5991 6121 0 2250 91 3 0 chr3 199742121 199742429 -18294729 - AluSc SINE Alu 0 309 1 487 308 106 27 chr3 199742904 199743346 -18293812 - HERV16 LTR ERVL -781 4983 4507 1797 136 10 10 chr3 199743348 199743642 -18293516 + AluSq SINE Alu 1 294 -19 342 362 20 30 chr3 199743711 199743910 -18293248 - HERV16 LTR ERVL -1379 4275 4079 345 301 0 29 chr3 199744012 199744115 -18293043 - HERV16 LTR ERVL -4183 813 714 918 277 70 58 chr3 199744480 199745062 -18292096 - HERV16 LTR ERVL -4407 589 1 1206 238 85 48 chr3 199745063 199745500 -18291658 - LTR16A1 LTR ERVL -1 456 4 2051 92 38 3 chr3 199745545 199745838 -18291320 - AluSq SINE Alu -10 303 1 1468 155 0 16 chr3 199745838 199746096 -18291062 - L1MC1 LINE L1 -10 6323 6070 3834 163 40 29 chr3 199746096 199746486 -18290672 - MER44D DNA MER2_type -1882 605 221 2062 62 0 33 chr3 199746486 199746800 -18290358 - AluY SINE Alu 0 320 16 2151 102 7 0 chr3 199746802 199747105 -18290053 - AluSx SINE Alu -7 305 1 3834 163 40 29 chr3 199747105 199747435 -18289723 - MER44D DNA MER2_type -2266 221 1 2152 84 3 0 chr3 199748014 199748299 -18288859 - AluY SINE Alu -2 309 24 365 258 42 113 chr3 199748583 199748796 -18288362 - L2 LINE L2 0 3313 3075 23 0 0 0 chr3 199749419 199749442 -18287716 + AT_rich Low_complexity Low_complexity 1 23 0 1898 117 10 14 chr3 199749465 199749755 -18287403 - AluJb SINE Alu -21 291 3 191 277 77 0 chr3 199751400 199751465 -18285693 + MIR3 SINE MIR 115 184 -24 3698 195 67 22 chr3 199751692 199752127 -18285031 + L1ME1 LINE L1 4525 4939 -1227 207 0 0 0 chr3 199752127 199752150 -18285008 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3698 195 67 22 chr3 199752150 199753284 -18283874 + L1ME1 LINE L1 4939 6161 -5 3827 53 4 0 chr3 199753478 199753951 -18283207 - L1P LINE L1 -1797 4349 3875 6394 225 39 30 chr3 199753951 199754975 -18282183 + L1MB7 LINE L1 101 1167 -5479 2256 95 3 16 chr3 199754975 199755291 -18281867 + AluSx SINE Alu 1 312 0 6394 225 39 30 chr3 199755291 199756019 -18281139 + L1MB7 LINE L1 1167 1887 -4759 3609 180 148 40 chr3 199756023 199756508 -18280650 + L1MB7 LINE L1 5345 5777 -905 222 37 0 0 chr3 199756508 199756535 -18280623 + (TAA)n Simple_repeat Simple_repeat 2 28 0 3609 180 148 40 chr3 199756535 199757147 -18280011 + L1MB7 LINE L1 5777 6581 -101 1939 116 13 3 chr3 199757147 199757469 -18279689 + AluSq SINE Alu 1 313 0 3609 180 148 40 chr3 199757469 199757584 -18279574 + L1MB7 LINE L1 6581 6682 0 1726 95 16 56 chr3 199758625 199758877 -18278281 + AluSx SINE Alu 1 242 -70 8759 62 4 6 chr3 199759012 199760844 -18276314 - L1PA5 LINE L1 -75 6079 4255 230 341 11 0 chr3 199761429 199761517 -18275641 + L2 LINE L2 2267 2355 -959 215 349 12 0 chr3 199763568 199763651 -18273507 + MIR3 SINE MIR 119 202 -6 1174 244 77 40 chr3 199763675 199764024 -18273134 - MLT2B3 LTR ERVL -1 553 192 4369 105 3 19 chr3 199764033 199764082 -18273076 + HERVL LTR ERVL 1 49 -5605 2126 84 44 0 chr3 199764082 199764357 -18272801 - AluY SINE Alu -2 309 23 4369 105 3 19 chr3 199764357 199764946 -18272212 + HERVL LTR ERVL 49 629 -5025 3159 119 36 11 chr3 199764959 199765429 -18271729 - THE1-int LTR MaLR 0 1580 1099 758 213 88 46 chr3 199766526 199766742 -18270416 - MLT1D LTR MaLR -7 498 274 1851 118 3 44 chr3 199766810 199767106 -18270052 - AluSg SINE Alu -26 284 1 2472 90 3 0 chr3 199769229 199769539 -18267619 + AluSq SINE Alu 1 311 -2 1274 131 0 0 chr3 199769540 199769716 -18267442 + AluSg/x SINE Alu 133 308 -2 2184 90 10 10 chr3 199770570 199770870 -18266288 + AluSg SINE Alu 1 300 -10 195 42 0 0 chr3 199771344 199771368 -18265790 + (CA)n Simple_repeat Simple_repeat 1 24 0 251 180 70 109 chr3 199771384 199771512 -18265646 - L1ME4a LINE L1 -49 6072 5950 2340 99 0 0 chr3 199771544 199771838 -18265320 + AluSx SINE Alu 1 294 -18 387 318 14 7 chr3 199772315 199772463 -18264695 - L1ME4a LINE L1 -195 5926 5778 257 324 19 0 chr3 199772463 199772568 -18264590 - L1ME LINE L1 -237 5884 5778 508 256 108 41 chr3 199772568 199773072 -18264086 - L1ME4a LINE L1 -237 5884 5313 859 243 0 9 chr3 199773518 199773728 -18263430 - MIR SINE MIR -46 216 9 366 273 151 26 chr3 199774053 199774205 -18262953 - MIR SINE MIR -43 219 53 677 184 0 32 chr3 199774257 199774382 -18262776 - FLAM_A SINE Alu -12 121 1 200 195 0 0 chr3 199774415 199774456 -18262702 + MIR SINE MIR 91 131 -131 2220 95 11 0 chr3 199774507 199774790 -18262368 + AluSg SINE Alu 23 308 -2 234 0 0 0 chr3 199774829 199774855 -18262303 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 218 282 13 13 chr3 199775311 199775389 -18261769 + L3 LINE CR1 1498 1575 -2 674 326 21 4 chr3 199777772 199778014 -18259144 + MIR SINE MIR 16 261 -1 271 322 70 2 chr3 199778040 199778207 -18258951 - MIR SINE MIR -55 207 32 2048 82 0 0 chr3 199778415 199778672 -18258486 + AluSc SINE Alu 39 295 -14 1081 171 43 9 chr3 199780025 199780236 -18256922 - L1MA9 LINE L1 -173 6139 5922 183 80 0 0 chr3 199780237 199780262 -18256896 + (CA)n Simple_repeat Simple_repeat 2 26 0 706 183 0 0 chr3 199780264 199780390 -18256768 + L1MA9 LINE L1 6180 6305 -7 316 257 191 0 chr3 199781038 199781174 -18255984 - MIR SINE MIR -4 258 97 224 216 39 0 chr3 199781351 199781402 -18255756 + MIR3 SINE MIR 125 177 -31 427 222 11 0 chr3 199781526 199781616 -18255542 + L2 LINE L2 3182 3272 0 2074 109 4 4 chr3 199782313 199782621 -18254537 - AluSq SINE Alu 0 316 9 1724 179 0 20 chr3 199783741 199784043 -18253115 - AluJo SINE Alu -16 296 1 1677 217 141 19 chr3 199784197 199784706 -18252452 + MLT1E3 LTR MaLR 1 652 -2 452 250 90 121 chr3 199784951 199785355 -18251803 + L1MC4a LINE L1 5315 5356 -765 2114 127 0 3 chr3 199785355 199785647 -18251511 + AluSq SINE Alu 3 293 -20 452 250 90 121 chr3 199785647 199785929 -18251229 + L1MC4a LINE L1 5356 5645 -476 16493 17 1 1 chr3 199786981 199789660 -18247498 - L1HS LINE L1 0 6155 3479 3937 150 33 17 chr3 199790599 199791324 -18245834 - L1MB3 LINE L1 0 6183 5447 242 266 181 0 chr3 199791391 199791485 -18245673 + L2 LINE L2 3159 3269 -3 283 278 10 21 chr3 199791521 199791618 -18245540 - MIR SINE MIR -95 167 72 1490 170 110 31 chr3 199792021 199792339 -18244819 - MER2 DNA MER2_type -1 343 1 1783 161 7 10 chr3 199792977 199793268 -18243890 + AluJb SINE Alu 1 290 -22 2361 105 0 3 chr3 199794727 199795040 -18242118 + AluSx SINE Alu 1 312 0 850 118 0 16 chr3 199796945 199797072 -18240086 - FLAM_C SINE Alu -5 128 4 264 240 0 0 chr3 199797591 199797641 -18239517 + C-rich Low_complexity Low_complexity 1 50 0 468 213 6 39 chr3 199797690 199798009 -18239149 + C-rich Low_complexity Low_complexity 1 308 0 428 196 23 35 chr3 199798069 199798242 -18238916 + C-rich Low_complexity Low_complexity 4 174 0 1204 110 0 0 chr3 199798670 199798833 -18238325 - AluSg/x SINE Alu -13 297 135 26 0 0 0 chr3 199799603 199799629 -18237529 + AT_rich Low_complexity Low_complexity 1 26 0 272 290 0 0 chr3 199799706 199799775 -18237383 + L2 LINE L2 3203 3271 -1 1659 173 0 52 chr3 199800098 199800422 -18236736 + AluJo SINE Alu 1 307 -5 1932 130 6 51 chr3 199801753 199801797 -18235361 - Tigger3(Golem) DNA MER2_type -1 3027 2983 2257 105 7 0 chr3 199801797 199802091 -18235067 - AluSx SINE Alu -16 296 1 1932 130 6 51 chr3 199802091 199802442 -18234716 - Tigger3(Golem) DNA MER2_type -45 2983 2 371 302 0 39 chr3 199807122 199807304 -18229854 + G-rich Low_complexity Low_complexity 4 178 0 219 292 53 18 chr3 199807235 199807406 -18229752 + (CGGG)n Simple_repeat Simple_repeat 3 179 0 * 339 383 0 6 chr3 199807368 199807543 -18229615 + G-rich Low_complexity Low_complexity 2 175 0 33 25 0 0 chr3 199808386 199808426 -18228732 + GC_rich Low_complexity Low_complexity 1 40 0 192 77 0 0 chr3 199810144 199810170 -18226988 + (A)n Simple_repeat Simple_repeat 1 26 0 2407 72 0 0 chr3 199812295 199812602 -18224556 - AluSg SINE Alu -3 307 1 662 122 0 0 chr3 199812663 199812753 -18224405 - 5S rRNA rRNA -31 90 1 600 188 30 53 chr3 199812936 199813069 -18224089 + MER2 DNA MER2_type 3 132 -213 762 199 103 0 chr3 199813069 199813225 -18223933 - FRAM SINE Alu -4 172 1 1254 175 18 0 chr3 199813225 199813442 -18223716 + MER2 DNA MER2_type 125 345 0 477 246 40 16 chr3 199814508 199814634 -18222524 + MIR SINE MIR 110 238 -24 264 275 37 37 chr3 199816214 199816323 -18220835 - MER112 DNA MER1_type 0 260 152 232 227 23 11 chr3 199816332 199816420 -18220738 + (TA)n Simple_repeat Simple_repeat 1 89 0 834 190 29 11 chr3 199816733 199816907 -18220251 - MER96B DNA MER1_type? -238 179 3 185 274 89 79 chr3 199817622 199817812 -18219346 + L2 LINE L2 3016 3207 -65 229 265 44 15 chr3 199819483 199819551 -18217607 - MIR SINE MIR -111 151 82 2139 108 3 0 chr3 199821127 199821422 -18215736 - AluSx SINE Alu -16 296 1 316 214 97 29 chr3 199821447 199821550 -18215608 + MER112 DNA MER1_type 39 148 -112 191 357 0 0 chr3 199822235 199822305 -18214853 - L2 LINE L2 -5 3267 3198 228 351 53 43 chr3 199822556 199822744 -18214414 - L2 LINE L2 -471 2843 2654 266 341 11 0 chr3 199823190 199823278 -18213880 - L2 LINE L2 -959 2355 2267 268 336 49 41 chr3 199823662 199823784 -18213374 + MER91A DNA MER1_type 38 160 -36 431 262 90 16 chr3 199823859 199823981 -18213177 + MIR SINE MIR 23 153 -109 1741 149 38 62 chr3 199825752 199825910 -18211248 + MER46B DNA MER2_type 1 21 -2710 2078 122 0 0 chr3 199825910 199826213 -18210945 - AluSx SINE Alu -9 303 1 1741 149 38 62 chr3 199826213 199826423 -18210735 + MER46B DNA MER2_type 21 235 -1 756 153 0 8 chr3 199826563 199826687 -18210471 + FLAM_A SINE Alu 12 134 -8 1840 233 45 11 chr3 199828294 199828741 -18208417 + MLT1C LTR MaLR 6 467 0 214 330 10 40 chr3 199829273 199829373 -18207785 - MIR SINE MIR -14 248 152 200 194 0 0 chr3 199831026 199831062 -18206096 + A-rich Low_complexity Low_complexity 2 37 0 2025 119 0 31 chr3 199831131 199831449 -18205709 + AluSg SINE Alu 1 308 -2 643 246 80 49 chr3 199831493 199831717 -18205441 + MLT1D LTR MaLR 274 504 -1 271 148 37 9 chr3 199832842 199832950 -18204208 + (TA)n Simple_repeat Simple_repeat 2 112 0 4551 90 0 0 chr3 199833059 199833648 -18203510 + HERVL LTR ERVL 41 629 -5025 10522 104 36 29 chr3 199833661 199835230 -18201928 - THE1B-int LTR MaLR 0 1580 1 2768 86 17 6 chr3 199835230 199835590 -18201568 - THE1B LTR MaLR 0 364 1 21 36 0 0 chr3 199835697 199835725 -18201433 + AT_rich Low_complexity Low_complexity 1 28 0 363 295 92 69 chr3 199835785 199836002 -18201156 + L2 LINE L2 3043 3264 -8 201 227 0 76 chr3 199836184 199836250 -18200908 + MER5A DNA MER1_type 27 87 -102 1741 126 45 0 chr3 199836423 199836692 -18200466 + AluSq SINE Alu 6 286 -27 238 331 44 22 chr3 199837003 199837139 -18200019 - L2 LINE L2 -955 2359 2221 200 194 0 0 chr3 199838275 199838311 -18198847 + A-rich Low_complexity Low_complexity 2 37 0 2081 107 7 0 chr3 199838380 199838671 -18198487 + AluSg SINE Alu 1 293 -17 1988 104 4 4 chr3 199839197 199839477 -18197681 + AluSx SINE Alu 1 280 -32 231 103 0 0 chr3 199839479 199839518 -18197640 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 27 29 0 0 chr3 199839710 199839744 -18197414 + AT_rich Low_complexity Low_complexity 1 34 0 180 0 0 0 chr3 199839994 199840014 -18197144 + (T)n Simple_repeat Simple_repeat 1 20 0 1041 128 0 41 chr3 199840525 199840697 -18196461 - FRAM SINE Alu -11 165 1 1730 78 0 0 chr3 199840784 199841047 -18196111 - AluY SINE Alu 0 325 63 266 264 71 114 chr3 199842074 199842152 -18195006 + L2 LINE L2 2925 2996 -276 2206 103 0 0 chr3 199842152 199842453 -18194705 - AluSx SINE Alu -11 301 1 266 264 71 114 chr3 199842453 199842514 -18194644 + L2 LINE L2 2996 3058 -214 334 314 27 80 chr3 199842990 199843053 -18194105 + MER5A DNA MER1_type 12 77 -112 2112 115 3 0 chr3 199843053 199843349 -18193809 + AluSq SINE Alu 3 299 -14 334 314 27 80 chr3 199843349 199843473 -18193685 + MER5A DNA MER1_type 77 189 0 399 276 79 13 chr3 199843819 199843971 -18193187 - MIR SINE MIR -6 256 95 404 262 86 30 chr3 199844039 199844216 -18192942 + MIR SINE MIR 40 227 -35 26 0 0 0 chr3 199844282 199844308 -18192850 + AT_rich Low_complexity Low_complexity 1 26 0 1705 218 36 20 chr3 199844706 199845151 -18192007 + L1M4 LINE L1 3786 4237 -1909 1184 205 66 23 chr3 199845199 199845546 -18191612 + L1M4 LINE L1 4426 4787 -1359 1166 72 0 7 chr3 199845678 199845855 -18191303 - AluSq SINE Alu 0 306 131 342 219 0 0 chr3 199845859 199845923 -18191235 + L1MC4 LINE L1 6640 6703 -1339 201 195 0 0 chr3 199845924 199845965 -18191193 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 2394 54 0 0 chr3 199845966 199846260 -18190898 - AluY SINE Alu -17 294 1 1040 74 7 0 chr3 199846260 199846395 -18190763 - AluSq SINE Alu -177 136 1 206 299 144 58 chr3 199846905 199847079 -18190079 + L2 LINE L2 3044 3232 -40 1608 107 9 0 chr3 199847079 199847312 -18189846 + AluSg/x SINE Alu 72 306 -6 236 197 152 0 chr3 199847420 199847486 -18189672 + LTR33 LTR ERVL 4 79 -442 849 266 96 51 chr3 199847626 199848109 -18189049 + L2 LINE L2 2772 3270 -2 860 176 0 38 chr3 199848804 199848963 -18188195 - AluJ SINE Alu -31 281 129 330 26 0 0 chr3 199848963 199849002 -18188156 + (TTCC)n Simple_repeat Simple_repeat 4 42 0 856 133 0 0 chr3 199849027 199849155 -18188003 - AluJ SINE Alu -170 132 5 207 114 0 0 chr3 199850052 199850087 -18187071 + (TC)n Simple_repeat Simple_repeat 1 35 0 300 53 0 0 chr3 199850089 199850127 -18187031 + (CA)n Simple_repeat Simple_repeat 2 39 0 383 330 39 16 chr3 199850601 199850783 -18186375 + MER5A DNA MER1_type 1 186 -3 266 216 68 101 chr3 199850791 199850939 -18186219 + MIR SINE MIR 120 262 0 2207 104 7 0 chr3 199852067 199852374 -18184784 + AluSx SINE Alu 1 309 -3 791 277 50 36 chr3 199852518 199852796 -18184362 - L2 LINE L2 -1 3312 3031 2663 200 25 38 chr3 199852807 199852844 -18184314 + MER68 LTR ERV1 1 37 -525 1939 133 7 3 chr3 199852844 199853153 -18184005 + AluSx SINE Alu 1 310 -2 2663 200 25 38 chr3 199853153 199853671 -18183487 + MER68 LTR ERV1 37 549 -13 472 261 280 4 chr3 199853731 199853992 -18183166 - L2 LINE L2 -384 2930 2598 260 231 34 147 chr3 199854058 199854245 -18182913 + L2 LINE L2 3005 3161 -152 2229 94 0 0 chr3 199854245 199854542 -18182616 + AluY SINE Alu 1 297 -14 260 231 34 147 chr3 199854542 199854592 -18182566 + L2 LINE L2 3161 3215 -98 324 298 73 80 chr3 199854961 199855481 -18181677 + L2 LINE L2 2538 3059 -213 2040 106 3 26 chr3 199855795 199856106 -18181052 - AluSx SINE Alu -8 304 1 436 204 31 10 chr3 199856107 199856205 -18180953 + L2 LINE L2 3211 3310 -3 788 238 136 9 chr3 199856310 199856524 -18180634 - MIR SINE MIR 0 262 22 2201 83 7 0 chr3 199856901 199857190 -18179968 + AluSq SINE Alu 1 291 -22 656 286 17 11 chr3 199857338 199857513 -18179645 - MIR SINE MIR -67 195 20 312 272 35 18 chr3 199857964 199858078 -18179080 + L1MC5 LINE L1 7796 7911 -50 196 267 22 0 chr3 199859074 199859119 -18178039 + L2 LINE L2 2740 2785 -529 938 39 182 116 chr3 199859235 199859283 -18177875 + MER30 DNA MER1_type 38 81 -149 2098 97 4 4 chr3 199859283 199859561 -18177597 + AluSc SINE Alu 1 298 0 181 0 0 0 chr3 199859561 199859581 -18177577 + (CAAAA)n Simple_repeat Simple_repeat 1 165 0 938 39 182 116 chr3 199859581 199859712 -18177446 + MER30 DNA MER1_type 81 230 0 21714 24 0 0 chr3 199859734 199862249 -18174909 + L1P LINE L1 2711 5225 -921 508 199 60 66 chr3 199862349 199862515 -18174643 + L2 LINE L2 3099 3263 -50 419 207 227 47 chr3 199862994 199863144 -18174014 - MER5A DNA MER1_type -2 187 11 1805 152 0 36 chr3 199864375 199864516 -18172642 + AluJo SINE Alu 1 146 -166 2301 89 0 3 chr3 199864516 199864808 -18172350 + AluY SINE Alu 1 291 -20 1805 152 0 36 chr3 199864808 199864969 -18172189 + AluJo SINE Alu 146 292 -20 225 0 0 0 chr3 199867394 199867419 -18169739 + (CA)n Simple_repeat Simple_repeat 2 26 0 638 203 32 0 chr3 199869051 199869174 -18167984 - L1PA16 LINE L1 -61 6105 5979 386 313 22 15 chr3 199869228 199869362 -18167796 + MER5B DNA MER1_type 21 155 -23 27 29 0 0 chr3 199869791 199869825 -18167333 + AT_rich Low_complexity Low_complexity 1 34 0 1572 189 10 20 chr3 199869873 199870174 -18166984 + AluJb SINE Alu 1 298 -14 335 174 0 31 chr3 199870928 199871005 -18166153 + AluSg/x SINE Alu 136 190 -112 1319 80 0 6 chr3 199871105 199871267 -18165891 - AluSq SINE Alu -152 161 1 204 111 89 67 chr3 199871409 199871454 -18165704 + L2 LINE L2 3267 3312 -1 195 338 79 29 chr3 199871840 199871979 -18165179 - L3b LINE CR1 -132 1451 1306 571 331 25 0 chr3 199872633 199872796 -18164362 + MIR3 SINE MIR 42 208 0 16471 125 20 16 chr3 199872908 199874344 -18162814 - Tigger1 DNA MER2_type 0 2418 989 2480 68 7 3 chr3 199874344 199874653 -18162505 - AluSq SINE Alu -3 310 1 16471 125 20 16 chr3 199874653 199875416 -18161742 - Tigger1 DNA MER2_type -1429 989 207 2512 96 0 0 chr3 199875416 199875728 -18161430 + AluSx SINE Alu 1 312 0 16471 125 20 16 chr3 199875728 199875936 -18161222 - Tigger1 DNA MER2_type -2211 207 1 1592 196 51 24 chr3 199876087 199876418 -18160740 - MLT1A1 LTR MaLR -21 344 5 786 210 72 6 chr3 199876586 199876767 -18160391 - MER20 DNA MER1_type 0 219 27 293 242 86 94 chr3 199876938 199876989 -18160169 - L2 LINE L2 0 3272 3222 3892 34 9 0 chr3 199876989 199877430 -18159728 + L1PA4 LINE L1 5711 6155 0 293 242 86 94 chr3 199877430 199877506 -18159652 - L2 LINE L2 -50 3222 3146 1167 180 79 28 chr3 199878020 199878337 -18158821 + L1ME1 LINE L1 4528 4860 -1286 2382 105 0 6 chr3 199878359 199878674 -18158484 + AluSq SINE Alu 1 313 0 864 217 258 7 chr3 199878729 199879024 -18158134 - L1MD2 LINE L1 -27 6332 5964 * 942 158 59 30 chr3 199879021 199879135 -18158023 + L1ME1 LINE L1 4852 4976 -1170 2335 141 98 36 chr3 199879135 199879190 -18157968 + MER65A LTR ERV1 1 51 -394 2286 85 0 0 chr3 199879190 199879506 -18157652 + AluSg SINE Alu 1 316 0 2335 141 98 36 chr3 199879506 199879868 -18157290 + MER65A LTR ERV1 51 445 0 942 158 59 30 chr3 199879868 199879956 -18157202 + L1ME1 LINE L1 4976 5060 -1086 2013 240 117 48 chr3 199879957 199880715 -18156443 + MER21B LTR ERV1 1 811 -52 3459 184 73 29 chr3 199880731 199881340 -18155818 + L1ME1 LINE L1 5036 5616 -550 2140 106 34 0 chr3 199881340 199881632 -18155526 - AluSx SINE Alu -10 302 1 3459 184 73 29 chr3 199881632 199881846 -18155312 + L1ME1 LINE L1 5616 5819 -347 1832 156 8 131 chr3 199881846 199882099 -18155059 - MER7A DNA MER2_type -2692 346 160 1842 156 3 31 chr3 199882099 199882420 -18154738 + AluJo SINE Alu 1 312 0 1832 156 8 131 chr3 199882420 199882563 -18154595 - MER7A DNA MER2_type -2878 160 1 3459 184 73 29 chr3 199882563 199882814 -18154344 + L1ME1 LINE L1 5819 6164 -2 2064 218 49 35 chr3 199882985 199883558 -18153600 + MER74B LTR ERVL 3 583 -39 2238 129 0 0 chr3 199884660 199884963 -18152195 - AluSx SINE Alu -9 303 1 2543 231 107 35 chr3 199885277 199886108 -18151050 + L1MC4 LINE L1 6572 7462 -580 334 190 20 90 chr3 199886109 199886123 -18151035 + L1MC4 LINE L1 7578 7591 -451 2386 98 0 16 chr3 199886123 199886439 -18150719 + AluSq SINE Alu 1 311 -2 1772 154 3 43 chr3 199886440 199886765 -18150393 + AluJb SINE Alu 1 312 0 334 190 20 90 chr3 199886765 199886848 -18150310 + L1MC4 LINE L1 7590 7670 -372 198 80 70 60 chr3 199886936 199887036 -18150122 + (CATATA)n Simple_repeat Simple_repeat 4 104 0 1543 177 7 141 chr3 199887046 199887201 -18149957 + MLT1A1 LTR MaLR 1 175 -190 1671 166 30 7 chr3 199887201 199887497 -18149661 + AluJo SINE Alu 1 303 -9 1543 177 7 141 chr3 199887497 199887759 -18149399 + MLT1A1 LTR MaLR 175 362 -3 445 143 7 143 chr3 199887847 199888001 -18149157 + L1MC4 LINE L1 7902 8034 -8 1299 209 77 66 chr3 199888092 199888181 -18148977 - L1ME2 LINE L1 -32 6132 6046 2150 94 3 27 chr3 199888181 199888480 -18148678 + AluSq SINE Alu 1 292 -21 180 0 0 0 chr3 199888480 199888500 -18148658 + (TA)n Simple_repeat Simple_repeat 2 21 0 1299 209 77 66 chr3 199888500 199888890 -18148268 - L1ME2 LINE L1 -118 6046 5584 2383 97 13 0 chr3 199888890 199889198 -18147960 + AluSx SINE Alu 1 312 0 1299 209 77 66 chr3 199889198 199889233 -18147925 - L1ME2 LINE L1 -580 5584 5551 600 277 90 36 chr3 199889243 199889575 -18147583 - L1MC/D LINE L1 -1993 5815 5466 2400 107 0 0 chr3 199889785 199890093 -18147065 + AluSp SINE Alu 6 313 0 239 318 51 61 chr3 199890167 199890381 -18146777 + L2 LINE L2 2836 3047 -225 221 250 0 0 chr3 199890677 199890725 -18146433 - MIR3 SINE MIR -18 190 143 229 193 45 23 chr3 199890763 199890851 -18146307 - L1ME4a LINE L1 -4 6117 6028 684 222 195 9 chr3 199890946 199891167 -18145991 - L1ME4a LINE L1 -224 5897 5636 315 351 0 18 chr3 199891396 199891510 -18145648 - MER5B DNA MER1_type -66 112 1 2244 104 0 0 chr3 199892276 199892563 -18144595 + AluSx SINE Alu 1 287 -25 984 298 75 0 chr3 199892590 199892909 -18144249 - LTR16C LTR ERVL 0 491 149 324 349 71 0 chr3 199893912 199894038 -18143120 + MIR SINE MIR 20 154 -108 729 247 13 84 chr3 199894050 199894236 -18142922 + MIR SINE MIR 15 182 -80 465 19 0 0 chr3 199894236 199894290 -18142868 + (TG)n Simple_repeat Simple_repeat 1 54 0 729 247 13 84 chr3 199894290 199894342 -18142816 + MIR SINE MIR 182 236 -26 271 295 19 9 chr3 199894617 199894722 -18142436 + L1MEc LINE L1 1606 1711 -4685 2191 114 7 0 chr3 199894987 199895284 -18141874 - AluSx SINE Alu -13 299 1 1150 194 9 5 chr3 199895504 199895715 -18141443 + AluJo SINE Alu 1 212 -100 609 246 221 4 chr3 199895790 199896071 -18141087 + L1MEc LINE L1 1953 2294 -4102 24255 83 8 4 chr3 199896072 199900194 -18136964 + L1PA7 LINE L1 2018 6154 0 1587 259 98 4 chr3 199900225 199900773 -18136385 + L1MEc LINE L1 2290 2889 -3326 875 260 27 30 chr3 199900770 199901101 -18136057 - L1M4 LINE L1 -2966 3180 2851 * 271 278 263 10 chr3 199901203 199901401 -18135757 - MIR SINE MIR -4 258 11 250 318 108 34 chr3 199902062 199902210 -18134948 - MIR SINE MIR -21 241 83 2415 58 0 0 chr3 199902238 199902533 -18134625 + AluY SINE Alu 1 295 -16 417 66 0 0 chr3 199902806 199902867 -18134291 + (TA)n Simple_repeat Simple_repeat 2 62 0 349 152 11 152 chr3 199902869 199902961 -18134197 - FRAM/FAM SINE Alu -96 79 1 280 265 29 0 chr3 199903075 199903143 -18134015 + MER81 DNA DNA 1 70 -44 2227 112 0 0 chr3 199903416 199903710 -18133448 + AluSx SINE Alu 1 294 -18 412 212 101 28 chr3 199903913 199904092 -18133066 + L1MC5 LINE L1 7555 7746 -215 310 153 0 17 chr3 199904092 199904151 -18133007 + MER4D LTR ERV1 584 641 -262 536 265 13 7 chr3 199904157 199904308 -18132850 + L1MC5 LINE L1 7763 7914 -47 28 0 0 0 chr3 199904317 199904345 -18132813 + AT_rich Low_complexity Low_complexity 1 28 0 196 282 77 57 chr3 199904508 199904579 -18132579 - L3 LINE CR1 -65 1512 1444 2241 121 145 21 chr3 199904579 199904959 -18132199 - MSTA LTR MaLR 0 428 2 196 282 77 57 chr3 199904959 199905096 -18132062 - L3 LINE CR1 -133 1444 1300 6082 100 28 46 chr3 199905123 199906042 -18131116 + MER4D LTR ERV1 1 903 0 207 129 0 65 chr3 199906219 199906281 -18130877 + (TTTTA)n Simple_repeat Simple_repeat 2 59 0 2429 65 3 19 chr3 199906618 199906927 -18130231 - AluY SINE Alu -7 304 1 3285 113 29 0 chr3 199906928 199907414 -18129744 - L1MC1 LINE L1 -358 5975 5476 2324 112 0 0 chr3 199907462 199907765 -18129393 + AluSx SINE Alu 1 303 -9 2150 107 7 0 chr3 199908143 199908433 -18128725 + AluSp SINE Alu 1 292 -21 2221 169 3 24 chr3 199908537 199908910 -18128248 - MLT1A1 LTR MaLR 0 365 1 3417 210 56 119 chr3 199908911 199910143 -18127015 - MLT1A1-int LTR MaLR -1 1370 229 1921 150 201 8 chr3 199910143 199910502 -18126656 - MSTA LTR MaLR 0 428 1 3417 210 56 119 chr3 199910502 199910614 -18126544 - MLT1A1-int LTR MaLR -1142 229 111 28 48 0 0 chr3 199910736 199910778 -18126380 + AT_rich Low_complexity Low_complexity 1 42 0 258 190 17 0 chr3 199910809 199910867 -18126291 + MLT1-int LTR MaLR 829 887 -484 2342 104 0 0 chr3 199911070 199911369 -18125789 + AluSg SINE Alu 1 299 -11 651 187 0 8 chr3 199912662 199912785 -18124373 - MLT1A1-int LTR MaLR -1608 127 6 1076 163 71 98 chr3 199912785 199912916 -18124242 - MLT1A1 LTR MaLR -69 296 163 2451 35 42 0 chr3 199912916 199913201 -18123957 - AluY SINE Alu -14 297 1 1076 163 71 98 chr3 199913201 199913364 -18123794 - MLT1A1 LTR MaLR -202 163 10 1145 168 76 86 chr3 199913483 199913615 -18123543 - MLT1A1 LTR MaLR -64 301 169 2382 53 42 0 chr3 199913615 199913900 -18123258 - AluY SINE Alu -14 297 1 1145 168 76 86 chr3 199913900 199914071 -18123087 - MLT1A1 LTR MaLR -196 169 1 2037 102 3 18 chr3 199914301 199914613 -18122545 - AluSg SINE Alu 0 308 1 291 114 23 0 chr3 199914858 199914902 -18122256 - MER57A LTR ERV1 -179 224 180 1661 106 0 0 chr3 199915006 199915248 -18121910 + AluSx SINE Alu 64 305 0 324 167 181 0 chr3 199915254 199915326 -18121832 - MER58 DNA MER1_type -2335 85 1 455 319 43 49 chr3 199915420 199915605 -18121553 - L2 LINE L2 -439 2875 2692 2290 110 0 0 chr3 199915976 199916286 -18120872 + AluSq SINE Alu 1 310 -3 993 99 15 0 chr3 199917325 199917456 -18119702 - AluSg SINE Alu -177 133 1 2395 192 44 24 chr3 199917464 199917791 -18119367 - L1MC3 LINE L1 -138 7647 7305 2306 98 16 0 chr3 199917791 199918097 -18119061 - AluSp SINE Alu -2 311 1 2395 192 44 24 chr3 199918097 199918268 -18118890 - L1MC3 LINE L1 -480 7305 7139 1913 132 17 10 chr3 199918625 199918920 -18118238 - AluSx SINE Alu -15 297 1 2296 103 0 3 chr3 199919260 199919561 -18117597 - AluSx SINE Alu -12 300 1 1616 136 45 4 chr3 199919929 199920193 -18116965 - Tigger2 DNA MER2_type -1 2717 2443 323 264 42 35 chr3 199920440 199920623 -18116535 + HAL1b LINE L1 790 2355 -152 245 292 67 51 chr3 199920638 199920790 -18116368 + MIR SINE MIR 1 159 -49 1099 176 11 5 chr3 199920791 199920978 -18116180 + MER5A DNA MER1_type 1 188 -1 1045 193 45 58 chr3 199920991 199921159 -18115999 + MER58A DNA MER1_type 5 171 -2249 2184 100 31 0 chr3 199921159 199921450 -18115708 + AluSx SINE Alu 1 300 -12 1045 193 45 58 chr3 199921450 199921504 -18115654 + MER58A DNA MER1_type 171 224 0 3125 133 7 3 chr3 199921770 199922450 -18114708 + MER72 LTR ERV1 8 722 0 1600 120 26 0 chr3 199922732 199922965 -18114193 + LTR28 LTR ERV1 1 239 -781 3389 106 21 124 chr3 199923849 199924143 -18113015 - MER4A LTR ERV1 0 600 412 2174 109 0 32 chr3 199924143 199924455 -18112703 - AluSx SINE Alu -10 302 1 3389 106 21 124 chr3 199924455 199924829 -18112329 - MER4A LTR ERV1 -188 412 1 337 191 0 0 chr3 199925142 199925205 -18111953 + MER8 DNA MER2_type 177 239 0 521 122 243 9 chr3 199925758 199925790 -18111368 + MER3 DNA MER1_type 78 101 -108 2426 93 0 0 chr3 199925790 199926090 -18111068 - AluSq SINE Alu -13 300 1 521 122 243 9 chr3 199926090 199926164 -18110994 + MER3 DNA MER1_type 101 209 0 22 35 0 0 chr3 199927214 199927243 -18109915 + AT_rich Low_complexity Low_complexity 1 29 0 2258 99 3 3 chr3 199927609 199927912 -18109246 + AluSx SINE Alu 1 303 -9 2393 97 7 0 chr3 199928358 199928667 -18108491 + AluSx SINE Alu 1 311 -1 2494 54 0 0 chr3 199928751 199929046 -18108112 - AluY SINE Alu -16 295 1 2127 72 15 0 chr3 199930148 199930410 -18106748 - AluSc SINE Alu -6 303 38 1442 189 31 21 chr3 199930822 199931113 -18106045 + AluJo SINE Alu 1 294 -18 2221 98 0 7 chr3 199931969 199932288 -18104870 + AluSq SINE Alu 1 317 0 294 185 108 0 chr3 199932514 199932579 -18104579 + MER112 DNA MER1_type 79 150 -110 1640 95 0 0 chr3 199932736 199932946 -18104212 + AluSg/x SINE Alu 96 305 -5 276 30 0 0 chr3 199933477 199933510 -18103648 + (CA)n Simple_repeat Simple_repeat 2 34 0 2272 107 7 0 chr3 199934160 199934460 -18102698 - AluSx SINE Alu -10 302 1 229 275 87 80 chr3 199934516 199934713 -18102445 - L1P LINE L1 -2477 3669 3475 2474 60 13 0 chr3 199934713 199935013 -18102145 - AluSp SINE Alu -9 304 1 229 275 87 80 chr3 199935013 199935229 -18101929 - L1P LINE L1 -2671 3475 3253 22 56 0 0 chr3 199935367 199935403 -18101755 + AT_rich Low_complexity Low_complexity 1 36 0 1351 192 58 21 chr3 199936339 199936720 -18100438 - L1MC4 LINE L1 -919 7123 6613 1149 244 76 9 chr3 199936744 199937072 -18100086 - L1MC4 LINE L1 -1351 6691 6342 689 278 122 30 chr3 199937137 199937604 -18099554 + L1MC4a LINE L1 4744 5253 -893 265 266 142 0 chr3 199937782 199937895 -18099263 - LTR16A1 LTR ERVL 0 457 329 313 80 0 193 chr3 199938753 199938841 -18098317 - L1MC3 LINE L1 -6 7779 7709 2318 96 3 7 chr3 199939124 199939427 -18097731 + AluSx SINE Alu 1 302 -10 815 146 0 76 chr3 199939506 199939650 -18097508 + FLAM_A SINE Alu 1 133 0 252 134 15 90 chr3 199939655 199939722 -18097436 + L1M4 LINE L1 3896 3957 -2189 295 252 17 61 chr3 199939728 199939856 -18097302 + L1P LINE L1 4902 5032 -1114 949 279 127 38 chr3 199940045 199940675 -18096483 + L1MC4a LINE L1 5254 5939 -1869 285 209 9 36 chr3 199940824 199940934 -18096224 + L1MCa LINE L1 1105 1211 -5215 507 143 187 0 chr3 199940934 199941025 -18096133 - Tigger1 DNA MER2_type -1 2417 2310 947 158 0 0 chr3 199941030 199941169 -18095989 - Tigger1 DNA MER2_type -2279 139 1 267 200 0 0 chr3 199941169 199941214 -18095944 + L1MCa LINE L1 1209 1253 -5173 3487 128 22 11 chr3 199941225 199941766 -18095392 - LTR10A LTR ERV1 -62 547 1 2064 168 107 32 chr3 199941808 199942625 -18094533 + L1MCa LINE L1 1244 2227 -4199 753 127 50 66 chr3 199942654 199942765 -18094393 - MER34C LTR ERV1 0 585 474 1968 155 126 90 chr3 199942765 199942951 -18094207 + LTR54 LTR ERV1 1 179 -331 252 0 0 0 chr3 199942951 199942979 -18094179 + (GA)n Simple_repeat Simple_repeat 1 28 0 1968 155 126 90 chr3 199942979 199943182 -18093976 + LTR54 LTR ERV1 179 414 -96 1767 103 12 8 chr3 199943182 199943435 -18093723 - AluY SINE Alu -13 298 45 1968 155 126 90 chr3 199943435 199943535 -18093623 + LTR54 LTR ERV1 414 509 -1 753 127 50 66 chr3 199943535 199943604 -18093554 - MER34C LTR ERV1 -111 474 408 616 101 0 0 chr3 199943605 199943684 -18093474 + MSTA LTR MaLR 134 212 -216 * 2289 131 5 67 chr3 199943681 199943956 -18093202 - MER34C LTR ERV1 -172 413 169 2503 156 50 31 chr3 199943956 199944140 -18093018 + MSTB LTR MaLR 1 180 -246 2355 90 3 7 chr3 199944140 199944439 -18092719 + AluSp SINE Alu 1 298 -15 2503 156 50 31 chr3 199944439 199944672 -18092486 + MSTB LTR MaLR 180 426 0 2289 131 5 67 chr3 199944672 199944800 -18092358 - MER34C LTR ERV1 -416 169 35 1140 258 14 57 chr3 199944802 199945296 -18091862 + L1MCa LINE L1 2316 2750 -3676 * 3084 147 36 9 chr3 199945270 199945799 -18091359 - L1PA15 LINE L1 -111 6054 5512 21864 182 44 21 chr3 199945799 199948397 -18088761 - ERVL LTR ERVL -969 4795 1997 2001 194 6 11 chr3 199948397 199948762 -18088396 - MLT1A1 LTR MaLR -2 363 1 21864 182 44 21 chr3 199948762 199950158 -18087000 - ERVL LTR ERVL -3767 1997 636 4771 60 5 0 chr3 199950398 199950952 -18086206 + LTR6B LTR ERV1 2 558 0 2370 89 3 0 chr3 199950961 199951263 -18085895 - AluSp SINE Alu -9 304 2 2955 220 50 37 chr3 199951343 199951750 -18085408 - MER21B LTR ERV1 -124 739 318 1680 183 7 7 chr3 199951750 199952045 -18085113 - AluJb SINE Alu -17 295 1 2955 220 50 37 chr3 199952045 199952359 -18084799 - MER21B LTR ERV1 -545 318 9 857 178 54 43 chr3 199952413 199952598 -18084560 + MER5A DNA MER1_type 1 187 -2 2280 95 30 0 chr3 199952796 199953091 -18084067 - AluSp SINE Alu -9 304 1 210 315 135 9 chr3 199953169 199953280 -18083878 + MIR SINE MIR 131 255 -7 1736 201 109 6 chr3 199953412 199953771 -18083387 - MSTD LTR MaLR 0 396 1 2266 128 0 0 chr3 199953945 199954257 -18082901 - AluSx SINE Alu 0 312 1 290 286 20 20 chr3 199954277 199954375 -18082783 - MIR3 SINE MIR -9 199 102 2282 110 3 0 chr3 199954890 199955189 -18081969 - AluSg SINE Alu -10 300 1 474 114 57 0 chr3 199955245 199955315 -18081843 + AluJb SINE Alu 45 118 -194 12538 116 28 98 chr3 199955965 199956526 -18080632 + Tigger4(Zombi) DNA MER2_type 1 600 -2131 2155 114 0 16 chr3 199956526 199956842 -18080316 + AluSq SINE Alu 1 311 -2 12538 116 28 98 chr3 199956842 199957142 -18080016 + Tigger4(Zombi) DNA MER2_type 600 920 -1811 1579 183 17 23 chr3 199957142 199957443 -18079715 - AluJo SINE Alu -13 299 1 12538 116 28 98 chr3 199957443 199958816 -18078342 + Tigger4(Zombi) DNA MER2_type 920 2066 -665 1749 140 11 21 chr3 199958816 199959101 -18078057 + AluJo SINE Alu 11 292 -20 12538 116 28 98 chr3 199959101 199959206 -18077952 + Tigger4(Zombi) DNA MER2_type 2066 2177 -554 2056 117 40 0 chr3 199959208 199959662 -18077496 + AluSq SINE Alu 1 466 0 267 31 0 0 chr3 199959680 199959712 -18077446 + (GGAA)n Simple_repeat Simple_repeat 1 32 0 3398 133 16 35 chr3 199959714 199959851 -18077307 + Tigger4(Zombi) DNA MER2_type 2167 2305 -426 2394 123 131 8 chr3 199959851 199960232 -18076926 + MSTA LTR MaLR 1 428 0 3398 133 16 35 chr3 199960232 199960630 -18076528 + Tigger4(Zombi) DNA MER2_type 2305 2693 -38 2207 119 0 0 chr3 199960630 199960923 -18076235 - AluSg SINE Alu -17 293 1 3398 133 16 35 chr3 199960923 199960956 -18076202 + Tigger4(Zombi) DNA MER2_type 2693 2725 -6 3439 136 31 42 chr3 199961413 199962057 -18075101 + L1MC1 LINE L1 5238 5874 -459 1036 155 134 5 chr3 199962057 199962244 -18074914 + AluJo SINE Alu 76 286 -26 601 276 67 46 chr3 199962272 199962755 -18074403 + L1 LINE L1 2539 3151 -2995 2391 77 0 13 chr3 199962755 199963065 -18074093 + AluY SINE Alu 1 306 -5 601 276 67 46 chr3 199963065 199963383 -18073775 + L1 LINE L1 3151 3461 -2685 260 284 33 44 chr3 199963404 199963587 -18073571 + L1 LINE L1 3519 3699 -2447 440 291 88 18 chr3 199963613 199963840 -18073318 + L1 LINE L1 4378 4620 -1526 411 289 69 29 chr3 199964030 199964480 -18072678 + L1 LINE L1 4882 5349 -797 432 279 199 50 chr3 199964675 199964879 -18072279 + HAL1 LINE L1 1455 1627 -880 2108 114 0 17 chr3 199964879 199965178 -18071980 + AluSx SINE Alu 1 294 -18 432 279 199 50 chr3 199965178 199965374 -18071784 + HAL1 LINE L1 1627 1915 -592 1619 123 0 16 chr3 199965733 199965977 -18071181 - AluSq SINE Alu 0 313 74 376 270 189 9 chr3 199966209 199966320 -18070838 + L2 LINE L2 3136 3266 -6 356 269 148 27 chr3 199966388 199966537 -18070621 - MIR SINE MIR -81 181 15 2355 104 0 0 chr3 199966743 199967051 -18070107 - AluSg SINE Alu -2 308 1 547 189 139 90 chr3 199967168 199967558 -18069600 - MLT1J2 LTR MaLR -8 442 1 2207 124 0 0 chr3 199967574 199967873 -18069285 - AluSx SINE Alu -11 301 3 306 140 35 0 chr3 199967874 199967931 -18069227 - AluSq/x SINE Alu -166 136 78 1308 151 0 28 chr3 199967931 199968149 -18069009 - AluSx SINE Alu -100 212 1 449 322 89 3 chr3 199968463 199968705 -18068453 - L1MC/D LINE L1 -2095 5713 5443 226 248 44 18 chr3 199968708 199968821 -18068337 - L1MC/D LINE L1 -2427 5381 5266 431 313 230 10 chr3 199969002 199969306 -18067852 - L1MC/D LINE L1 -1152 4994 4624 314 262 107 48 chr3 199969324 199969530 -18067628 - L1MC/D LINE L1 -1557 4589 4372 268 188 16 62 chr3 199971887 199971951 -18065207 + L2 LINE L2 3251 3311 -2 455 351 75 8 chr3 199973300 199973539 -18063619 - MIR SINE MIR 0 262 8 1831 93 0 12 chr3 199973593 199973840 -18063318 + AluSq SINE Alu 2 245 -68 531 229 9 0 chr3 199975145 199975254 -18061904 - MER69 DNA AcHobo -2411 115 6 237 246 0 16 chr3 199975405 199975466 -18061692 + CT-rich Low_complexity Low_complexity 1 60 0 1480 189 0 8 chr3 199975827 199976105 -18061053 + AluJo SINE Alu 43 312 0 552 214 35 132 chr3 199976627 199976884 -18060274 + L1MC5 LINE L1 7664 7895 -66 912 209 0 12 chr3 199977053 199977225 -18059933 - FRAM SINE Alu -9 167 1 327 223 108 81 chr3 199977337 199977485 -18059673 - MIR3 SINE MIR -18 190 39 258 293 75 9 chr3 199978105 199978211 -18058947 + MIR SINE MIR 31 143 -119 2454 74 3 0 chr3 199978363 199978662 -18058496 - AluSp SINE Alu -12 301 2 299 280 308 11 chr3 199980098 199980280 -18056878 - MIR SINE MIR -15 247 12 542 197 17 8 chr3 199980689 199980806 -18056352 - L1ME3 LINE L1 -4 6158 6041 2311 107 3 0 chr3 199980807 199981117 -18056041 + AluSx SINE Alu 1 311 -1 1797 242 41 11 chr3 199981180 199981622 -18055536 + Zaphod DNA AcHobo 34 488 -3543 232 184 0 79 chr3 199981635 199981711 -18055447 + Zaphod DNA AcHobo 924 993 -3038 615 156 111 7 chr3 199981727 199981862 -18055296 + Zaphod DNA AcHobo 3622 3770 -261 22 0 0 0 chr3 199981899 199981921 -18055237 + AT_rich Low_complexity Low_complexity 1 22 0 908 216 151 55 chr3 199981966 199982258 -18054900 + MLT1C LTR MaLR 186 467 0 424 287 168 23 chr3 199982274 199982332 -18054826 + L1MC4a LINE L1 5337 5385 -736 1615 167 34 125 chr3 199982332 199982740 -18054418 - MLT1A2 LTR MaLR -1 373 3 424 287 168 23 chr3 199982740 199983183 -18053975 + L1MC4a LINE L1 5385 5817 -304 393 279 137 26 chr3 199983340 199983573 -18053585 + MLT1J2 LTR MaLR 65 323 -127 336 148 56 0 chr3 199983606 199983660 -18053498 + MLT1J2 LTR MaLR 388 444 -6 39 38 0 0 chr3 199983671 199983724 -18053434 + AT_rich Low_complexity Low_complexity 1 53 0 25 0 0 0 chr3 199984186 199984211 -18052947 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr3 199986583 199986609 -18050549 + AT_rich Low_complexity Low_complexity 1 26 0 2332 224 43 11 chr3 199986640 199987198 -18049960 - L1ME2 LINE L1 -34 6130 5555 2437 54 6 35 chr3 199987332 199987647 -18049511 + AluY SINE Alu 1 306 -5 861 130 8 0 chr3 199987690 199987813 -18049345 + FLAM_C SINE Alu 1 124 -9 2108 105 41 0 chr3 199988169 199988463 -18048695 + AluSq SINE Alu 1 306 -7 260 156 15 156 chr3 199989023 199989158 -18048000 - LTR38B LTR ERV1 -494 116 1 433 278 108 73 chr3 199989640 199989751 -18047407 + L1ME4a LINE L1 5550 5656 -465 2419 79 0 7 chr3 199989751 199990055 -18047103 + AluSg SINE Alu 1 302 -8 433 278 108 73 chr3 199990055 199990480 -18046678 + L1ME4a LINE L1 5656 6105 -16 2477 196 93 58 chr3 199990536 199990893 -18046265 - L1ME1 LINE L1 -148 6829 6486 2045 112 7 14 chr3 199990893 199991189 -18045969 - AluSx SINE Alu -18 294 1 2477 196 93 58 chr3 199991189 199991668 -18045490 - L1ME1 LINE L1 -491 6486 6048 2465 72 0 0 chr3 199991668 199991959 -18045199 - AluSq SINE Alu -22 291 1 2477 196 93 58 chr3 199991959 199992082 -18045076 - L1ME1 LINE L1 -929 6048 5931 1093 218 65 10 chr3 199992196 199992504 -18044654 - L1ME1 LINE L1 -1306 5651 5327 192 200 0 60 chr3 199993364 199993414 -18043744 + L2 LINE L2 3169 3215 -98 289 283 91 10 chr3 199994379 199994478 -18042680 + MIR SINE MIR 37 143 -119 2081 136 3 7 chr3 199994571 199994879 -18042279 - AluSq SINE Alu -6 307 1 392 200 25 12 chr3 199996069 199996149 -18041009 + MIR SINE MIR 1 81 -181 314 284 21 50 chr3 199997045 199997295 -18039863 + L1MCc LINE L1 18 389 -6034 2231 96 0 13 chr3 199997299 199997622 -18039536 - AluSx SINE Alu 0 312 1 2739 176 24 29 chr3 199997625 199998175 -18038983 - L1ME1 LINE L1 -1878 5079 4533 2643 123 18 53 chr3 199998176 199998415 -18038743 - Tigger2a DNA MER2_type -2275 433 216 1806 163 121 40 chr3 199998415 199998820 -18038338 + LTR21B LTR ERV1 1 438 0 2643 123 18 53 chr3 199998820 199999029 -18038129 - Tigger2a DNA MER2_type -2492 216 1 5486 228 51 47 chr3 199999029 200000213 -18036945 - L1ME1 LINE L1 -2423 4534 3364 2316 91 0 7 chr3 200000213 200000510 -18036648 - AluSx SINE Alu -17 295 1 5486 228 51 47 chr3 200000510 200001285 -18035873 - L1ME1 LINE L1 -3593 3364 2593 478 184 11 11 chr3 200001463 200001550 -18035608 - Tigger5 DNA MER2_type 0 2323 2237 500 196 0 43 chr3 200001561 200001630 -18035528 + Tigger5 DNA MER2_type 1 67 -2256 1355 181 90 57 chr3 200001630 200001810 -18035348 - MER2 DNA MER2_type -1 343 146 2331 94 0 28 chr3 200001810 200002128 -18035030 + AluSc SINE Alu 1 309 0 1355 181 90 57 chr3 200002128 200002279 -18034879 - MER2 DNA MER2_type -198 146 1 500 196 0 43 chr3 200002279 200002301 -18034857 + Tigger5 DNA MER2_type 67 88 -2235 385 194 14 14 chr3 200002319 200002391 -18034767 - Tigger5 DNA MER2_type -1 2322 2251 333 218 0 0 chr3 200002360 200002415 -18034743 - Tigger5 DNA MER2_type -2268 55 1 * 1864 260 95 21 chr3 200002482 200002677 -18034481 - L1ME1 LINE L1 -4550 2409 2230 1916 126 54 92 chr3 200002677 200002908 -18034250 - THE1C LTR MaLR 0 375 164 2054 123 0 7 chr3 200002908 200003193 -18033965 + AluSx SINE Alu 21 303 -9 1916 126 54 92 chr3 200003193 200003351 -18033807 - THE1C LTR MaLR -211 164 1 10901 109 20 39 chr3 200003351 200004573 -18032585 - THE1C-int LTR MaLR 0 1580 395 2208 126 0 0 chr3 200004573 200004874 -18032284 + AluSx SINE Alu 1 301 -11 10901 109 20 39 chr3 200004874 200005259 -18031899 - THE1C-int LTR MaLR -1185 395 4 1829 165 45 60 chr3 200005262 200005302 -18031856 - THE1C LTR MaLR 0 375 336 2203 102 7 3 chr3 200005302 200005595 -18031563 + AluSg SINE Alu 1 294 -16 1829 165 45 60 chr3 200005595 200005935 -18031223 - THE1C LTR MaLR -39 336 1 1864 260 95 21 chr3 200005935 200006442 -18030716 - L1ME1 LINE L1 -4730 2229 1650 766 154 106 0 chr3 200006442 200006565 -18030593 - AluJo SINE Alu -175 137 2 4126 209 59 25 chr3 200006567 200007900 -18029258 - L1ME1 LINE L1 -5336 1523 3 256 253 25 13 chr3 200008024 200008103 -18029055 + ORSL DNA AcHobo 194 273 -2 2229 75 58 3 chr3 200008611 200008904 -18028254 - AluSx SINE Alu -2 310 2 200 244 56 22 chr3 200008924 200009014 -18028144 + L3 LINE CR1 909 1001 -576 410 315 104 12 chr3 200009164 200009405 -18027753 + L3 LINE CR1 1010 1272 -305 250 293 49 0 chr3 200009464 200009546 -18027612 - L2 LINE L2 0 3272 3187 277 221 41 87 chr3 200010606 200010682 -18026476 + MIR SINE MIR 35 113 -140 2101 65 4 33 chr3 200010682 200010957 -18026201 + AluSp SINE Alu 35 301 -12 277 221 41 87 chr3 200010957 200011051 -18026107 + MIR SINE MIR 113 192 -61 321 278 33 12 chr3 200011267 200011389 -18025769 - MIR3 SINE MIR -23 185 56 208 232 303 58 chr3 200011449 200011604 -18025554 - MIR SINE MIR -65 197 5 1407 48 0 26 chr3 200014365 200014554 -18022604 - AluY SINE Alu 0 311 128 1024 95 0 14 chr3 200014656 200014828 -18022330 + AluSg/x SINE Alu 152 310 0 268 164 109 0 chr3 200015046 200015101 -18022057 + MER41D LTR ERV1 1 61 -496 21 36 0 0 chr3 200015355 200015383 -18021775 + AT_rich Low_complexity Low_complexity 1 28 0 719 272 18 6 chr3 200015709 200015878 -18021280 - MER5B DNA MER1_type -7 171 1 2214 103 0 6 chr3 200016481 200016792 -18020366 + AluSc SINE Alu 1 309 0 283 327 59 20 chr3 200016801 200016902 -18020256 - MIR SINE MIR -150 112 8 3198 158 50 2 chr3 200016970 200017495 -18019663 + MER41D LTR ERV1 1 550 -7 1838 185 174 9 chr3 200018685 200019123 -18018035 - MER34 LTR ERV1 0 542 21 2922 63 3 8 chr3 200019123 200019490 -18017668 - L1PA8 LINE L1 -8 6164 5800 1838 185 174 9 chr3 200019490 200019516 -18017642 - MER34 LTR ERV1 -521 21 1 509 274 50 89 chr3 200019569 200019927 -18017231 - L2 LINE L2 -8 3264 2921 203 250 58 0 chr3 200020652 200020704 -18016454 + MIR SINE MIR 111 165 -97 1529 89 201 42 chr3 200020829 200021088 -18016070 + AluSx SINE Alu 1 300 -2 501 252 84 44 chr3 200021844 200021958 -18015200 + MIR SINE MIR 3 111 -151 285 109 0 0 chr3 200021958 200022004 -18015154 + (TA)n Simple_repeat Simple_repeat 2 47 0 501 252 84 44 chr3 200022004 200022139 -18015019 + MIR SINE MIR 111 262 0 365 254 25 74 chr3 200022274 200022332 -18014826 + MLT1J LTR MaLR 102 152 -359 1857 185 143 73 chr3 200022332 200022495 -18014663 + MER119 DNA MER1_type 1 151 -432 2217 103 0 0 chr3 200022495 200022795 -18014363 - AluSx SINE Alu -12 300 1 1857 185 143 73 chr3 200022795 200023176 -18013982 + MER119 DNA MER1_type 151 583 0 365 254 25 74 chr3 200023176 200023239 -18013919 + MLT1J LTR MaLR 152 217 -294 243 0 0 0 chr3 200024145 200024172 -18012986 + (TTA)n Simple_repeat Simple_repeat 1 27 0 2091 89 0 4 chr3 200024172 200024453 -18012705 - AluSx SINE Alu -32 280 1 475 223 50 16 chr3 200025175 200025296 -18011862 + MER20B DNA MER1_type 162 286 -497 2221 64 3 24 chr3 200025298 200025632 -18011526 - AluSp SINE Alu 0 313 1 544 177 79 59 chr3 200025695 200025898 -18011260 + MER20B DNA MER1_type 478 684 -99 531 191 83 42 chr3 200025899 200026086 -18011072 + MLT1J1 LTR MaLR 17 220 -230 248 339 25 25 chr3 200026111 200026229 -18010929 + MLT1J2 LTR MaLR 273 390 -60 5091 82 34 1 chr3 200026235 200026904 -18010254 + LTR8 LTR ERV1 1 691 0 378 223 21 11 chr3 200026964 200027058 -18010100 + MER20B DNA MER1_type 685 779 -4 1268 178 58 10 chr3 200027069 200027378 -18009780 + MER33 DNA MER1_type 1 324 0 245 192 0 19 chr3 200027649 200027701 -18009457 + GA-rich Low_complexity Low_complexity 2 52 0 429 275 120 30 chr3 200027876 200028078 -18009080 + MLT1L LTR MaLR 111 411 -200 1791 151 6 35 chr3 200029067 200029386 -18007772 + AluJb SINE Alu 1 310 -2 575 251 176 5 chr3 200029675 200029744 -18007414 - MIR SINE MIR -10 252 196 2232 108 3 0 chr3 200029744 200030051 -18007107 + AluSx SINE Alu 1 308 -4 575 251 176 5 chr3 200030051 200030180 -18006978 - MIR SINE MIR -66 196 20 574 168 80 0 chr3 200030321 200030446 -18006712 - L1MA4 LINE L1 -1 6299 6165 434 157 12 0 chr3 200030450 200030533 -18006625 + CT-rich Low_complexity Low_complexity 4 87 0 1638 171 0 4 chr3 200030557 200030826 -18006332 - AluJb SINE Alu -44 268 1 2092 119 10 10 chr3 200031732 200032044 -18005114 - AluSx SINE Alu 0 312 1 748 243 63 42 chr3 200032054 200032293 -18004865 - MIR SINE MIR -13 249 6 199 280 32 43 chr3 200032627 200032720 -18004438 + MIR3 SINE MIR 110 201 -7 238 250 38 25 chr3 200032944 200033024 -18004134 - MER112 DNA MER1_type -120 140 60 945 188 148 0 chr3 200034028 200034230 -18002928 - MLT1F1 LTR MaLR 0 567 336 726 257 101 13 chr3 200034226 200034463 -18002695 + HsTC2 DNA Tc2 380 637 -1261 * 2210 88 0 3 chr3 200034752 200035048 -18002110 + AluSc SINE Alu 1 295 -14 266 324 103 37 chr3 200035389 200035525 -18001633 + MIR SINE MIR 110 254 -8 2326 87 3 0 chr3 200035551 200035863 -18001295 - AluSq SINE Alu 0 313 1 321 336 47 0 chr3 200036126 200036233 -18000925 - L2 LINE L2 -16 3256 3145 411 320 39 7 chr3 200036244 200036397 -18000761 - MIR SINE MIR -6 256 99 2435 57 0 22 chr3 200036561 200036879 -18000279 - AluY SINE Alu 0 311 1 1870 137 7 10 chr3 200037575 200037875 -17999283 - AluSx SINE Alu -13 299 1 1041 262 128 6 chr3 200037879 200038245 -17998913 + L2 LINE L2 2895 3305 -8 1882 137 0 34 chr3 200038548 200038870 -17998288 + AluSx SINE Alu 1 311 -1 2710 94 8 0 chr3 200039040 200039401 -17997757 + THE1B LTR MaLR 1 364 0 335 137 50 43 chr3 200039495 200039627 -17997531 - MER112 DNA MER1_type -28 232 1 3274 159 67 18 chr3 200039860 200040475 -17996683 + MER67B LTR ERV1 13 657 -4 213 216 0 0 chr3 200040485 200040522 -17996636 + (CA)n Simple_repeat Simple_repeat 1 37 0 240 250 125 94 chr3 200040978 200041266 -17995892 + L1MEd LINE L1 112 408 -5711 23 33 0 0 chr3 200042139 200042169 -17994989 + AT_rich Low_complexity Low_complexity 1 30 0 2024 95 35 0 chr3 200045101 200045385 -17991773 + AluSg SINE Alu 1 294 -16 655 127 0 17 chr3 200045674 200045792 -17991366 - AluY SINE Alu -2 309 194 524 78 0 0 chr3 200095792 200095856 -17941302 - AluSq SINE Alu -54 259 196 1118 110 0 0 chr3 200095857 200096003 -17941155 - AluSq SINE Alu -166 146 1 391 258 116 58 chr3 200096031 200096186 -17940972 - L1ME4a LINE L1 -24 6097 5934 1506 148 42 42 chr3 200096348 200096495 -17940663 + AluJo SINE Alu 1 150 -162 1738 96 96 11 chr3 200096495 200096766 -17940392 + AluSx SINE Alu 1 294 -18 1506 148 42 42 chr3 200096766 200096902 -17940256 + AluJo SINE Alu 149 284 -28 201 299 120 49 chr3 200098178 200098362 -17938796 + L3 LINE CR1 1365 1561 -16 250 284 194 3 chr3 200101455 200101583 -17935575 + MIR SINE MIR 29 181 -62 2313 60 0 44 chr3 200102235 200102370 -17934788 + AluSc SINE Alu 1 140 -169 2226 88 0 25 chr3 200102370 200102689 -17934469 + AluY SINE Alu 1 311 0 2313 60 0 44 chr3 200102689 200102872 -17934286 + AluSc SINE Alu 140 305 -4 221 275 257 0 chr3 200103020 200103129 -17934029 + MIR SINE MIR 10 146 -116 194 173 49 74 chr3 200103128 200103209 -17933949 - L2 LINE L2 -2898 416 338 * 1927 105 56 0 chr3 200103294 200103580 -17933578 - AluSg SINE Alu -8 302 1 987 90 23 0 chr3 200103580 200103713 -17933445 - AluSq/x SINE Alu -176 136 1 334 267 48 9 chr3 200103738 200103843 -17933315 - L1ME4a LINE L1 -406 5715 5607 1336 165 74 0 chr3 200103876 200103992 -17933166 + AluJb SINE Alu 1 107 -205 381 75 0 0 chr3 200103992 200104045 -17933113 + (CA)n Simple_repeat Simple_repeat 2 54 0 1336 165 74 0 chr3 200104045 200104170 -17932988 + AluJb SINE Alu 107 260 -52 193 56 28 28 chr3 200104170 200104206 -17932952 + (CAA)n Simple_repeat Simple_repeat 1 36 0 464 234 14 35 chr3 200104230 200104375 -17932783 - L1ME1 LINE L1 -7 6159 6018 430 341 24 0 chr3 200104585 200104749 -17932409 + L3 LINE CR1 1301 1468 -109 847 166 7 7 chr3 200104753 200104892 -17932266 - AluJb SINE Alu -18 294 156 1244 110 11 0 chr3 200105032 200105214 -17931944 + AluSg/x SINE Alu 118 301 -9 237 260 82 0 chr3 200105586 200105659 -17931499 - L1ME1 LINE L1 -2143 5665 5587 * 307 294 20 72 chr3 200105642 200105795 -17931363 + L1ME4a LINE L1 5706 5850 -271 238 206 59 0 chr3 200105928 200105996 -17931162 + L1ME4a LINE L1 6050 6121 0 29 28 0 0 chr3 200106664 200106700 -17930458 + GC_rich Low_complexity Low_complexity 1 36 0 21 89 0 0 chr3 200106777 200106833 -17930325 + GC_rich Low_complexity Low_complexity 1 56 0 245 124 0 124 chr3 200106953 200107066 -17930092 + (CCCCCG)n Simple_repeat Simple_repeat 2 100 0 185 300 17 0 chr3 200108282 200108342 -17928816 - L2 LINE L2 -1 3271 3211 193 276 20 31 chr3 200108470 200108568 -17928590 - L2 LINE L2 -447 2867 2771 1561 131 84 11 chr3 200108573 200108825 -17928333 + AluJo SINE Alu 1 276 -36 198 0 0 0 chr3 200108825 200108847 -17928311 + (GA)n Simple_repeat Simple_repeat 1 22 0 1561 131 84 11 chr3 200108847 200108868 -17928290 + AluJo SINE Alu 276 294 -18 187 213 133 27 chr3 200109799 200109874 -17927284 + MIR3 SINE MIR 85 167 -41 254 350 86 6 chr3 200111304 200111467 -17925691 - MIR SINE MIR -17 245 70 354 245 38 38 chr3 200111692 200111798 -17925360 - MIR SINE MIR -134 128 23 2151 105 3 0 chr3 200112390 200112684 -17924474 - AluSx SINE Alu -17 295 1 346 233 270 6 chr3 200112876 200113039 -17924119 + MIR SINE MIR 57 262 0 2588 53 0 3 chr3 200113625 200113927 -17923231 - AluY SINE Alu -10 301 1 23 0 0 0 chr3 200113941 200113964 -17923194 + AT_rich Low_complexity Low_complexity 1 23 0 372 238 79 0 chr3 200114270 200114371 -17922787 + MIR SINE MIR 49 157 -105 187 231 26 0 chr3 200114384 200114423 -17922735 + L2 LINE L2 3215 3254 -18 914 169 49 5 chr3 200115658 200115842 -17921316 + AluJo SINE Alu 111 302 -10 678 210 140 31 chr3 200115842 200116128 -17921030 + L1ME2 LINE L1 5830 6146 -18 236 264 14 14 chr3 200116155 200116167 -17920991 + L1MC4a LINE L1 7726 7737 -71 2114 117 3 40 chr3 200116167 200116491 -17920667 + AluSq SINE Alu 1 312 -1 236 264 14 14 chr3 200116491 200116550 -17920608 + L1MC4a LINE L1 7736 7797 -11 1668 117 121 8 chr3 200116989 200117246 -17919912 + AluSg1 SINE Alu 1 286 -23 2369 93 3 0 chr3 200117341 200117643 -17919515 + AluSp SINE Alu 2 304 -9 26 0 0 0 chr3 200117815 200117841 -17919317 + AT_rich Low_complexity Low_complexity 1 26 0 1971 117 25 7 chr3 200118153 200118434 -17918724 - AluSx SINE Alu -24 288 3 1410 228 160 37 chr3 200118545 200119224 -17917934 + L1MDa LINE L1 69 1123 -5417 972 133 0 7 chr3 200119225 200119368 -17917790 + AluJo SINE Alu 1 142 -170 593 177 0 0 chr3 200119418 200119514 -17917644 - FRAM SINE Alu -13 163 68 314 65 22 22 chr3 200119618 200119664 -17917494 + Alu SINE Alu 245 290 -12 1902 142 14 10 chr3 200119841 200120129 -17917029 - AluSx SINE Alu -23 289 1 2493 66 0 10 chr3 200120170 200120474 -17916684 - AluY SINE Alu -10 301 1 2424 50 10 13 chr3 200121683 200121983 -17915175 + AluY SINE Alu 1 299 -12 2333 109 0 0 chr3 200122309 200122612 -17914546 - AluSg SINE Alu -7 303 1 2025 116 7 7 chr3 200122671 200123005 -17914153 - AluSx SINE Alu 0 334 1 181 308 192 10 chr3 200123067 200123171 -17913987 + MIR SINE MIR 12 134 -128 253 236 0 0 chr3 200123199 200123254 -17913904 + MER33 DNA MER1_type 17 71 -253 2177 106 7 0 chr3 200123259 200123552 -17913606 - AluSq SINE Alu -15 298 4 1156 169 25 72 chr3 200123571 200123777 -17913381 + MER33 DNA MER1_type 60 274 -2311 2054 122 0 0 chr3 200123777 200124055 -17913103 + AluSg SINE Alu 1 278 -32 189 0 0 0 chr3 200124055 200124076 -17913082 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 1156 169 25 72 chr3 200124076 200124146 -17913012 + MER33 DNA MER1_type 272 324 0 364 258 32 0 chr3 200124216 200124309 -17912849 + MER3 DNA MER1_type 2 97 -112 2097 115 3 0 chr3 200124311 200124597 -17912561 - AluSg SINE Alu -23 287 1 294 132 147 15 chr3 200124600 200124668 -17912490 + MER3 DNA MER1_type 128 204 -5 226 250 29 15 chr3 200124618 200124686 -17912472 - MER3 DNA MER1_type -106 103 35 * 2367 67 0 10 chr3 200124692 200124992 -17912166 - AluY SINE Alu -14 297 1 22 35 0 0 chr3 200125511 200125540 -17911618 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr3 200125603 200125627 -17911531 + AT_rich Low_complexity Low_complexity 1 24 0 201 330 53 32 chr3 200126285 200126379 -17910779 - MIR3 SINE MIR -48 160 65 2340 60 0 0 chr3 200126444 200126754 -17910404 - AluY SINE Alu 0 311 2 2032 123 37 0 chr3 200127389 200127689 -17909469 - AluSx SINE Alu -1 311 1 1429 208 74 18 chr3 200127724 200128060 -17909098 - L1MC4 LINE L1 -371 7671 7317 23 0 0 0 chr3 200128357 200128380 -17908778 + AT_rich Low_complexity Low_complexity 1 23 0 1592 113 18 0 chr3 200128483 200128705 -17908453 + L1MA3 LINE L1 6080 6305 0 273 221 140 22 chr3 200128816 200128952 -17908206 - L1MC4 LINE L1 -2330 5478 5327 2228 107 13 7 chr3 200129182 200129491 -17907667 - AluSx SINE Alu -1 311 1 2005 92 95 3 chr3 200129650 200129933 -17907225 - AluSp SINE Alu -4 309 1 184 315 19 0 chr3 200129956 200130010 -17907148 - L2 LINE L2 -31 3241 3187 594 110 42 23 chr3 200130157 200130351 -17906807 - FAM SINE Alu -1 184 22 242 276 134 16 chr3 200130354 200130481 -17906677 - L1MC4 LINE L1 -411 7631 7490 545 232 33 71 chr3 200130491 200130727 -17906431 - L1MC5 LINE L1 -551 7491 7262 923 203 99 63 chr3 200131169 200131534 -17905624 - MLT1C LTR MaLR -1 466 77 193 357 93 7 chr3 200132701 200132775 -17904383 - MIR SINE MIR -64 198 132 2474 78 0 3 chr3 200132775 200133084 -17904074 - AluY SINE Alu -2 309 2 193 357 93 7 chr3 200133084 200133149 -17904009 - MIR SINE MIR -130 132 47 2283 101 0 3 chr3 200133151 200133448 -17903710 - AluSg SINE Alu -14 296 1 249 249 64 46 chr3 200133919 200134092 -17903066 - L1ME4a LINE L1 0 6121 5946 2154 108 7 0 chr3 200134128 200134414 -17902744 + AluSx SINE Alu 1 288 -24 209 234 85 0 chr3 200134479 200134526 -17902632 - L2 LINE L2 0 3272 3222 257 384 75 7 chr3 200135090 200135236 -17901922 - MIR3 SINE MIR -11 197 42 2236 106 7 3 chr3 200135237 200135538 -17901620 - AluSp SINE Alu -11 302 1 207 0 0 0 chr3 200135538 200135561 -17901597 + (T)n Simple_repeat Simple_repeat 1 23 0 2770 118 0 0 chr3 200135899 200136262 -17900896 - THE1B LTR MaLR 0 364 2 204 97 0 0 chr3 200137281 200137312 -17899846 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1911 153 4 0 chr3 200137316 200137597 -17899561 - AluSq SINE Alu -31 282 1 246 251 73 34 chr3 200137673 200137852 -17899306 + L1 LINE L1 3211 3396 -2750 27 0 0 0 chr3 200138525 200138552 -17898606 + AT_rich Low_complexity Low_complexity 1 27 0 868 202 0 29 chr3 200138561 200138734 -17898424 - FRAM SINE Alu -15 161 1 690 164 9 35 chr3 200138876 200138992 -17898166 - FLAM_C SINE Alu -29 114 2 2462 61 0 0 chr3 200139486 200139782 -17897376 + AluY SINE Alu 1 296 -15 2204 80 0 60 chr3 200140172 200140486 -17896672 - AluSq SINE Alu -18 295 1 2058 141 20 0 chr3 200140555 200140861 -17896297 - AluSx SINE Alu 0 312 1 818 317 113 19 chr3 200140903 200141326 -17895832 + L2 LINE L2 288 750 -2564 516 246 84 11 chr3 200141336 200141515 -17895643 - L2 LINE L2 -2265 1049 858 2324 88 3 0 chr3 200141516 200141813 -17895345 + AluSc SINE Alu 1 298 -11 272 324 29 37 chr3 200142590 200142665 -17894493 + L2 LINE L2 3129 3205 -67 2036 119 0 14 chr3 200142665 200142982 -17894176 + AluSg SINE Alu 1 313 0 272 324 29 37 chr3 200142982 200143041 -17894117 + L2 LINE L2 3205 3263 -9 2351 78 7 3 chr3 200143047 200143354 -17893804 - AluY SINE Alu -3 308 1 1554 164 119 7 chr3 200143356 200143625 -17893533 - AluJo SINE Alu -3 299 1 796 317 101 11 chr3 200143672 200144028 -17893130 - L3 LINE CR1 -163 1414 1027 508 117 13 0 chr3 200144571 200144648 -17892510 - Charlie5 DNA MER1_type 0 2624 2547 702 206 171 20 chr3 200144776 200144975 -17892183 + MIR SINE MIR 10 238 -24 325 308 242 5 chr3 200145012 200145223 -17891935 + L3 LINE CR1 1187 1447 -130 925 148 40 40 chr3 200146187 200146363 -17890795 - AluSg/x SINE Alu -15 295 120 236 226 85 38 chr3 200146471 200146577 -17890581 - L1MC5 LINE L1 -14 7947 7837 203 276 79 26 chr3 200146928 200147004 -17890154 + MIR3 SINE MIR 120 199 -9 2951 133 28 0 chr3 200147377 200147799 -17889359 - Tigger2a DNA MER2_type 0 434 1 204 333 9 27 chr3 200148005 200148116 -17889042 + MIR SINE MIR 56 164 -98 3352 162 35 5 chr3 200148309 200148889 -17888269 + Tigger1 DNA MER2_type 1 597 -1821 6912 18 3 0 chr3 200148899 200149643 -17887515 - L1PA2 LINE L1 0 6155 5410 10446 21 9 0 chr3 200149643 200150914 -17886244 + L1P1 LINE L1 4178 5456 -699 12014 114 22 21 chr3 200150914 200151425 -17885733 + Tigger1 DNA MER2_type 585 1094 -1324 2035 159 0 0 chr3 200151425 200151734 -17885424 - AluSx SINE Alu -3 309 1 12014 114 22 21 chr3 200151734 200151996 -17885162 + Tigger1 DNA MER2_type 1094 1354 -1064 2255 102 3 0 chr3 200151996 200152291 -17884867 + AluSx SINE Alu 1 296 -16 12014 114 22 21 chr3 200152291 200152423 -17884735 + Tigger1 DNA MER2_type 1354 1484 -934 1840 155 3 16 chr3 200152423 200152739 -17884419 + AluJo SINE Alu 1 312 0 12014 114 22 21 chr3 200152739 200153664 -17883494 + Tigger1 DNA MER2_type 1484 2418 0 1745 164 10 23 chr3 200153838 200154142 -17883016 - AluJb SINE Alu -12 300 1 2432 86 0 13 chr3 200154599 200154913 -17882245 - AluSx SINE Alu -2 310 1 2161 128 3 3 chr3 200155341 200155647 -17881511 - AluSx SINE Alu -6 306 1 201 262 71 36 chr3 200156194 200156278 -17880880 - L3 LINE CR1 -87 1490 1404 1313 178 0 9 chr3 200156316 200156546 -17880612 - AluJb SINE Alu 0 312 85 1728 178 30 3 chr3 200156546 200156850 -17880308 - AluJb SINE Alu 0 312 1 657 270 198 31 chr3 200156859 200157274 -17879884 - L3 LINE CR1 -260 1317 834 482 264 61 10 chr3 200157761 200157958 -17879200 - L1ME4a LINE L1 -287 5834 5628 1519 102 0 5 chr3 200158270 200158475 -17878683 - AluSg/x SINE Alu -7 305 102 521 183 58 10 chr3 200158561 200158665 -17878493 - MSTA LTR MaLR 0 428 320 246 143 14 43 chr3 200158684 200158754 -17878404 + CT-rich Low_complexity Low_complexity 2 69 0 2162 80 10 61 chr3 200158754 200159067 -17878091 - AluSx SINE Alu -15 297 1 1661 200 13 7 chr3 200159085 200159395 -17877763 - AluJo SINE Alu 0 312 1 186 133 0 0 chr3 200159402 200159432 -17877726 + (TA)n Simple_repeat Simple_repeat 2 31 0 2333 69 0 3 chr3 200159450 200159739 -17877419 - AluY SINE Alu -23 288 1 4907 165 21 47 chr3 200159749 200160131 -17877027 - L1MB3 LINE L1 -1 6182 5792 1526 174 40 20 chr3 200160131 200160293 -17876865 - AluJb SINE Alu -7 305 148 240 111 0 0 chr3 200160293 200160329 -17876829 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2405 52 0 24 chr3 200160329 200160620 -17876538 - AluY SINE Alu -27 284 1 1526 174 40 20 chr3 200160620 200160755 -17876403 - AluJb SINE Alu -163 149 1 4907 165 21 47 chr3 200160755 200161879 -17875279 - L1MB3 LINE L1 -391 5792 4699 606 246 134 58 chr3 200162006 200162319 -17874839 - L2 LINE L2 -46 3267 2931 2412 87 0 0 chr3 200162924 200163222 -17873936 + AluY SINE Alu 1 298 -13 525 261 154 11 chr3 200163381 200163569 -17873589 - MIR SINE MIR -25 237 23 183 256 26 0 chr3 200163585 200163624 -17873534 + MIR SINE MIR 112 151 -111 2100 137 0 29 chr3 200164218 200164532 -17872626 - AluSx SINE Alu -7 305 1 1777 163 21 10 chr3 200164554 200164843 -17872315 - AluJo SINE Alu -20 292 1 184 277 108 0 chr3 200164865 200164930 -17872228 + L2 LINE L2 3191 3262 -51 195 197 115 33 chr3 200164944 200165005 -17872153 + L2 LINE L2 3181 3246 -26 529 172 213 4 chr3 200165195 200165360 -17871798 + L1MC4a LINE L1 7631 7995 0 1070 156 0 17 chr3 200165507 200165686 -17871472 - AluSg/x SINE Alu 0 312 137 211 254 18 0 chr3 200165915 200165970 -17871188 + MER5A DNA MER1_type 67 122 -67 211 364 82 0 chr3 200166268 200166378 -17870780 - MIR SINE MIR -130 132 14 2324 113 0 0 chr3 200167341 200167643 -17869515 + AluSg SINE Alu 1 302 -8 345 204 0 0 chr3 200167780 200167834 -17869324 - AluJ/monomer SINE Alu -247 55 2 1156 182 10 5 chr3 200167970 200168192 -17868966 + AluJb SINE Alu 86 308 0 2233 43 0 4 chr3 200168200 200168456 -17868702 + AluY SINE Alu 1 255 -56 1849 128 0 0 chr3 200168456 200168714 -17868444 + AluSx SINE Alu 49 306 -6 21 0 0 0 chr3 200168982 200169003 -17868155 + AT_rich Low_complexity Low_complexity 1 21 0 2180 68 61 17 chr3 200169699 200169992 -17867166 + AluSx SINE Alu 1 306 -6 208 260 70 20 chr3 200170127 200170227 -17866931 - L2 LINE L2 -638 2676 2572 307 174 43 14 chr3 200170290 200170359 -17866799 + MIR SINE MIR 74 144 -118 216 0 0 0 chr3 200170621 200170645 -17866513 + (CCCCG)n Simple_repeat Simple_repeat 5 28 0 31 44 0 0 chr3 200170660 200170705 -17866453 + GC_rich Low_complexity Low_complexity 1 45 0 24 0 0 0 chr3 200170845 200170869 -17866289 + GC_rich Low_complexity Low_complexity 1 24 0 1059 274 186 32 chr3 200171869 200172331 -17864827 - L2 LINE L2 -527 2787 2397 739 107 38 30 chr3 200172331 200172462 -17864696 + FLAM_C SINE Alu 1 132 -1 1059 274 186 32 chr3 200172462 200172772 -17864386 - L2 LINE L2 -917 2397 1896 306 253 212 6 chr3 200172895 200173065 -17864093 - L1MC/D LINE L1 -2346 5462 5258 265 159 0 0 chr3 200173499 200173543 -17863615 - Alu SINE Alu -3 299 256 1235 60 0 0 chr3 200173543 200173692 -17863466 + AluSg/x SINE Alu 156 304 -8 1205 193 33 8 chr3 200173694 200173937 -17863221 + L1MB7 LINE L1 5887 6135 -49 219 186 0 0 chr3 200173939 200173982 -17863176 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 2213 74 10 23 chr3 200173985 200174284 -17862874 - AluY SINE Alu -16 295 1 1902 141 0 30 chr3 200174298 200174595 -17862563 - AluJo SINE Alu -24 288 1 2227 104 0 7 chr3 200175062 200175359 -17861799 + AluSx SINE Alu 1 295 -17 2169 103 17 0 chr3 200175454 200175745 -17861413 + AluSx SINE Alu 1 296 -16 1736 117 129 4 chr3 200176778 200176876 -17860282 + AluSx SINE Alu 1 85 -227 216 0 0 0 chr3 200176876 200176900 -17860258 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1736 117 129 4 chr3 200176900 200177065 -17860093 + AluSx SINE Alu 85 297 -15 258 257 76 28 chr3 200177275 200177419 -17859739 - L1M4 LINE L1 -3142 3004 2854 2179 130 3 0 chr3 200177535 200177828 -17859330 - AluSx SINE Alu -18 294 1 1902 157 0 6 chr3 200177937 200178249 -17858909 - AluJo SINE Alu -2 310 1 2263 85 10 3 chr3 200178657 200178952 -17858206 + AluY SINE Alu 1 297 -14 262 323 147 38 chr3 200179003 200179329 -17857829 - L2 LINE L2 -226 3087 2712 1093 214 135 51 chr3 200179347 200179466 -17857692 - L1ME2 LINE L1 0 6164 6056 2103 80 4 0 chr3 200179466 200179728 -17857430 + AluSp SINE Alu 33 295 -18 2169 150 17 0 chr3 200179731 200180085 -17857073 + MER46B DNA MER2_type 2 236 0 1093 214 135 51 chr3 200180085 200180353 -17856805 - L1ME2 LINE L1 -109 6055 5740 2182 91 30 14 chr3 200180578 200180875 -17856283 - AluSg SINE Alu -7 303 2 2358 90 3 0 chr3 200181060 200181361 -17855797 - AluSx SINE Alu -10 302 1 2017 132 3 3 chr3 200181728 200182015 -17855143 + AluSx SINE Alu 1 287 -25 2098 116 3 7 chr3 200183384 200183676 -17853482 - AluSq SINE Alu -18 295 5 2497 63 26 0 chr3 200184005 200184307 -17852851 - AluSp SINE Alu -1 312 3 348 226 36 0 chr3 200184501 200184585 -17852573 - MER5A DNA MER1_type -82 107 21 22 35 0 0 chr3 200185536 200185565 -17851593 + AT_rich Low_complexity Low_complexity 1 29 0 2109 101 32 4 chr3 200185565 200185843 -17851315 - AluSg SINE Alu -24 286 1 486 277 129 50 chr3 200186078 200186339 -17850819 - MARNA DNA Mariner -156 430 128 2140 116 3 0 chr3 200186339 200186632 -17850526 + AluSx SINE Alu 1 294 -18 486 277 129 50 chr3 200186632 200186749 -17850409 - MARNA DNA Mariner -458 128 22 496 197 25 33 chr3 200187292 200187414 -17849744 - AluSq/x SINE Alu -187 126 6 32 0 0 0 chr3 200187821 200187853 -17849305 + AT_rich Low_complexity Low_complexity 1 32 0 423 218 0 13 chr3 200187913 200187991 -17849167 + Tigger5 DNA MER2_type 1 77 -2246 380 230 0 0 chr3 200187996 200188070 -17849088 - Tigger5 DNA MER2_type -8 2315 2242 * 508 163 0 0 chr3 200188060 200188140 -17849018 + Tigger5 DNA MER2_type 2242 2321 -2 2318 88 7 7 chr3 200188577 200188885 -17848273 - AluSp SINE Alu -5 308 1 2262 96 13 0 chr3 200189349 200189650 -17847508 - AluSp SINE Alu -8 305 1 2353 89 3 13 chr3 200191033 200191348 -17845810 + AluSx SINE Alu 1 312 0 1782 175 48 6 chr3 200191389 200191721 -17845437 - MER7A DNA MER2_type -1 345 2 449 289 122 10 chr3 200191731 200191928 -17845230 - MIR SINE MIR -16 246 28 1966 125 20 23 chr3 200192046 200192349 -17844809 + AluSx SINE Alu 1 302 -10 2069 125 13 3 chr3 200192353 200192656 -17844502 + AluSq SINE Alu 1 306 -7 2216 90 14 3 chr3 200192798 200193088 -17844070 + AluSq SINE Alu 8 300 -13 183 277 36 36 chr3 200193184 200193267 -17843891 + MER5A DNA MER1_type 78 160 -29 2254 119 3 0 chr3 200193929 200194224 -17842934 + AluSx SINE Alu 1 296 -16 208 263 62 38 chr3 200194409 200194489 -17842669 + MIR SINE MIR 20 101 -161 186 167 0 0 chr3 200194544 200194574 -17842584 + L2 LINE L2 3224 3253 -19 1105 169 49 74 chr3 200194995 200195238 -17841920 - AluJo SINE Alu -75 237 1 1875 139 20 14 chr3 200195491 200195650 -17841508 - AluSx SINE Alu -14 298 135 2160 119 0 7 chr3 200195650 200195944 -17841214 - AluSg SINE Alu -18 292 1 1875 139 20 14 chr3 200195944 200196079 -17841079 - AluSx SINE Alu -177 135 2 1043 249 80 47 chr3 200196409 200196774 -17840384 - MLT1J LTR MaLR -134 377 1 2156 100 4 0 chr3 200196974 200197253 -17839905 + AluSp SINE Alu 21 300 -13 391 185 193 17 chr3 200197388 200197507 -17839651 - L1MC5 LINE L1 -56 7905 7766 230 179 0 104 chr3 200197774 200197841 -17839317 - MIR SINE MIR -111 151 92 2075 118 24 3 chr3 200197951 200198248 -17838910 - AluSc SINE Alu -6 303 1 2209 89 31 7 chr3 200198370 200198662 -17838496 + AluSq SINE Alu 1 299 -14 301 236 150 21 chr3 200198814 200198954 -17838204 - MER91A DNA MER1_type -38 158 1 323 302 53 59 chr3 200199002 200199124 -17838034 - L2 LINE L2 -887 2427 2305 2434 95 0 0 chr3 200199124 200199429 -17837729 - AluSx SINE Alu -7 305 1 323 302 53 59 chr3 200199429 200199475 -17837683 - L2 LINE L2 -1009 2305 2260 314 238 48 48 chr3 200199599 200199705 -17837453 + Charlie8 DNA MER1_type 83 191 -150 2386 94 0 10 chr3 200199705 200200013 -17837145 - AluSx SINE Alu -7 305 1 314 238 48 48 chr3 200200013 200200032 -17837126 + Charlie8 DNA MER1_type 190 208 -133 543 318 70 5 chr3 200200050 200200124 -17837034 - MIR SINE MIR -28 234 166 2429 60 0 38 chr3 200200124 200200443 -17836715 - AluSc SINE Alu -2 307 1 543 318 70 5 chr3 200200443 200200582 -17836576 - MIR SINE MIR -96 166 7 684 169 0 17 chr3 200200795 200200913 -17836245 + FLAM_A SINE Alu 1 116 -17 2628 45 0 6 chr3 200200925 200201238 -17835920 - AluY SINE Alu 0 311 1 1033 105 0 0 chr3 200201238 200201371 -17835787 - AluSq/x SINE Alu -177 135 3 2076 115 3 3 chr3 200201803 200202090 -17835068 + AluSg SINE Alu 3 289 -21 705 124 8 25 chr3 200202273 200202394 -17834764 + MLT1A1 LTR MaLR 1 119 -246 636 136 0 0 chr3 200202403 200202520 -17834638 - AluSx SINE Alu 0 308 192 1081 99 0 0 chr3 200202521 200202662 -17834496 - AluSx SINE Alu -171 141 1 2206 107 0 35 chr3 200202683 200202993 -17834165 - AluSx SINE Alu -13 299 1 2343 90 3 3 chr3 200202997 200203296 -17833862 - AluSp SINE Alu -14 299 1 1873 164 3 10 chr3 200203304 200203596 -17833562 - AluJb SINE Alu -22 290 1 1419 164 17 4 chr3 200203596 200203827 -17833331 + MLT1A1 LTR MaLR 132 365 0 23 0 0 0 chr3 200203883 200203906 -17833252 + AT_rich Low_complexity Low_complexity 1 23 0 1137 175 9 19 chr3 200204003 200204225 -17832933 + L1M4 LINE L1 5525 5706 -478 2338 66 0 10 chr3 200204227 200204538 -17832620 + AluY SINE Alu 1 308 0 2212 113 3 0 chr3 200204540 200204840 -17832318 + AluSp SINE Alu 3 303 -10 2393 122 37 8 chr3 200205130 200205484 -17831674 - THE1B LTR MaLR 0 364 1 1797 181 152 38 chr3 200206129 200206486 -17830672 + LTR48B LTR ERV1 1 438 -206 2229 83 0 28 chr3 200206486 200206775 -17830383 + AluSg SINE Alu 15 295 -15 1797 181 152 38 chr3 200206775 200206942 -17830216 + LTR48B LTR ERV1 438 585 -59 207 0 0 0 chr3 200206996 200207019 -17830139 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1851 171 0 13 chr3 200207293 200207597 -17829561 + AluJo SINE Alu 1 300 -12 1963 79 50 46 chr3 200209176 200209479 -17827679 + AluSg SINE Alu 1 304 -6 214 263 18 0 chr3 200210459 200210516 -17826642 + (CATA)n Simple_repeat Simple_repeat 2 59 0 27 0 0 0 chr3 200210700 200210727 -17826431 + AT_rich Low_complexity Low_complexity 1 27 0 869 204 6 0 chr3 200212095 200212262 -17824896 - AluJo SINE Alu -9 303 136 2469 93 14 3 chr3 200213538 200213892 -17823266 + L1PA13 LINE L1 5806 6163 0 2169 112 0 3 chr3 200214315 200214600 -17822558 + AluSq SINE Alu 1 284 -29 190 74 0 0 chr3 200214600 200214627 -17822531 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1945 84 0 0 chr3 200216012 200216249 -17820909 + AluSx SINE Alu 1 237 -75 783 163 0 22 chr3 200216621 200216756 -17820402 - FLAM_C SINE Alu 0 133 2 2148 99 7 3 chr3 200217748 200218164 -17818994 + AluSq SINE Alu 1 417 0 420 306 150 20 chr3 200218370 200218664 -17818494 - L2 LINE L2 -914 2400 2069 2205 118 3 10 chr3 200219173 200219354 -17817804 - AluSx SINE Alu -1 311 130 346 53 35 0 chr3 200219354 200219411 -17817747 + (TTTTA)n Simple_repeat Simple_repeat 2 60 0 2250 70 3 3 chr3 200219411 200219695 -17817463 - AluSp SINE Alu -29 284 1 2205 118 3 10 chr3 200219695 200219825 -17817333 - AluSx SINE Alu -180 132 1 25 0 0 0 chr3 200220120 200220145 -17817013 + AT_rich Low_complexity Low_complexity 1 25 0 504 237 79 58 chr3 200221561 200221751 -17815407 - MER106A DNA MER1_type -38 198 5 1674 173 3 64 chr3 200222116 200222446 -17814712 - AluJo SINE Alu -2 310 1 180 315 34 79 chr3 200222800 200222889 -17814269 + L2 LINE L2 3092 3176 -96 * 221 200 0 0 chr3 200222869 200222914 -17814244 - MIR SINE MIR -140 122 78 1238 92 0 6 chr3 200223045 200223209 -17813949 - AluSq SINE Alu -20 293 131 259 267 27 0 chr3 200223209 200223284 -17813874 + MIR SINE MIR 127 203 -59 252 297 103 62 chr3 200223344 200223489 -17813669 + MIR3 SINE MIR 37 187 -21 1995 110 38 3 chr3 200223491 200223781 -17813377 - AluSg SINE Alu -8 302 3 1754 190 14 0 chr3 200224395 200224685 -17812473 + AluJb SINE Alu 1 294 -18 1423 118 49 86 chr3 200224721 200225025 -17812133 - MER1B DNA MER1_type 0 339 47 1732 96 42 0 chr3 200225031 200225270 -17811888 - AluSc SINE Alu -60 249 1 1051 138 22 82 chr3 200225656 200225846 -17811312 + MER46A DNA MER2_type 1 176 -2555 1882 169 3 3 chr3 200225846 200226148 -17811010 + AluJb SINE Alu 1 302 -10 1051 138 22 82 chr3 200226148 200226189 -17810969 + MER46A DNA MER2_type 176 218 -18 1951 146 3 7 chr3 200226227 200226522 -17810636 + AluSg SINE Alu 1 294 -16 2360 85 0 3 chr3 200226632 200226939 -17810219 - AluSc SINE Alu -3 306 1 26 30 0 0 chr3 200226955 200226988 -17810170 + AT_rich Low_complexity Low_complexity 1 33 0 2321 89 0 3 chr3 200228295 200228597 -17808561 - AluSc SINE Alu -8 301 1 26 30 0 0 chr3 200228974 200229007 -17808151 + AT_rich Low_complexity Low_complexity 1 33 0 848 172 12 37 chr3 200231147 200231310 -17805848 - FRAM SINE Alu -10 166 8 2430 51 0 26 chr3 200231320 200231632 -17805526 - AluY SINE Alu -7 304 1 346 298 165 14 chr3 200231698 200231916 -17805242 + L1ME LINE L1 5549 5799 -322 1758 152 7 14 chr3 200232009 200232286 -17804872 + AluJb SINE Alu 36 310 -2 1984 120 27 24 chr3 200232865 200233157 -17804001 - AluSx SINE Alu -19 293 1 894 233 52 115 chr3 200233274 200233336 -17803822 + L1MC4a LINE L1 5360 5424 -2384 1568 145 15 27 chr3 200233336 200233598 -17803560 + AluJo SINE Alu 35 293 -19 894 233 52 115 chr3 200233598 200234152 -17803006 + L1MC4a LINE L1 5424 5937 -1871 2371 97 0 0 chr3 200234179 200234477 -17802681 - AluSx SINE Alu -14 298 1 378 259 52 59 chr3 200234717 200234852 -17802306 + MIR3 SINE MIR 30 163 -45 877 89 0 15 chr3 200235495 200235630 -17801528 - FLAM_C SINE Alu 0 133 1 182 254 68 34 chr3 200235789 200235848 -17801310 + L2 LINE L2 3207 3267 -5 1820 147 63 0 chr3 200236084 200236370 -17800788 + AluJb SINE Alu 6 309 -3 27 0 0 0 chr3 200236444 200236471 -17800687 + AT_rich Low_complexity Low_complexity 1 27 0 2004 99 14 34 chr3 200236471 200236765 -17800393 - AluSc SINE Alu -21 288 1 1746 182 3 10 chr3 200236772 200237063 -17800095 - AluJo SINE Alu -23 289 1 252 262 65 56 chr3 200237367 200237474 -17799684 + L1MC4a LINE L1 7243 7350 -458 377 311 169 19 chr3 200237531 200237870 -17799288 + L1MC4 LINE L1 7318 7812 -230 30 83 0 0 chr3 200237880 200237952 -17799206 + AT_rich Low_complexity Low_complexity 1 72 0 678 308 121 20 chr3 200237963 200238369 -17798789 - L2 LINE L2 -1028 2286 1840 466 209 0 0 chr3 200238498 200238589 -17798569 - LTR4 LTR ERV1 0 596 506 2248 170 62 19 chr3 200238602 200239073 -17798085 + LTR4 LTR ERV1 106 596 0 633 106 0 0 chr3 200239868 200239972 -17797186 + L1MB2 LINE L1 6068 6171 0 1930 138 31 0 chr3 200240442 200240733 -17796425 - AluJo SINE Alu -10 302 3 1664 153 80 28 chr3 200242485 200242772 -17794386 - AluJo SINE Alu -8 304 3 778 247 67 40 chr3 200242799 200243127 -17794031 + L1ME4a LINE L1 5562 5898 -223 28 48 0 0 chr3 200243217 200243259 -17793899 + AT_rich Low_complexity Low_complexity 1 42 0 2012 153 0 3 chr3 200243392 200243687 -17793471 - AluSx SINE Alu -18 294 1 273 159 29 58 chr3 200244280 200244349 -17792809 - L2 LINE L2 -6 3307 3241 2061 128 3 16 chr3 200244373 200244685 -17792473 - AluSx SINE Alu -4 308 1 1896 99 4 4 chr3 200244710 200244963 -17792195 - AluSc SINE Alu -43 266 14 1884 97 16 8 chr3 200244963 200245220 -17791938 - AluSc SINE Alu -3 306 48 2399 53 40 0 chr3 200245347 200245646 -17791512 + AluY SINE Alu 1 311 0 352 343 59 14 chr3 200246181 200246467 -17790691 - L1MC/D LINE L1 -2061 5747 5449 22 35 0 0 chr3 200246751 200246780 -17790378 + AT_rich Low_complexity Low_complexity 1 29 0 1066 139 35 12 chr3 200246786 200246959 -17790199 - AluJb SINE Alu -2 310 134 2296 110 0 0 chr3 200246959 200247259 -17789899 - AluSx SINE Alu -12 300 1 375 23 0 0 chr3 200247991 200248035 -17789123 + (CA)n Simple_repeat Simple_repeat 2 45 0 1576 141 8 118 chr3 200248040 200248422 -17788736 + MER2 DNA MER2_type 2 341 -3 536 252 23 8 chr3 200248504 200248635 -17788523 + MER94 DNA DNA 2 134 0 1820 119 3 14 chr3 200249453 200249739 -17787419 + MER1B DNA MER1_type 57 339 0 2269 84 3 0 chr3 200250552 200250837 -17786321 + AluSc SINE Alu 1 286 -23 282 195 0 0 chr3 200251192 200251279 -17785879 + GA-rich Low_complexity Low_complexity 1 87 0 2047 132 0 14 chr3 200251495 200251790 -17785368 + AluJb SINE Alu 1 291 -21 204 319 36 65 chr3 200251817 200251905 -17785253 - MIR SINE MIR -122 140 56 2245 112 7 3 chr3 200251905 200252210 -17784948 + AluSx SINE Alu 1 306 -6 204 319 36 65 chr3 200252210 200252259 -17784899 - MIR SINE MIR -206 56 7 2377 93 0 28 chr3 200253054 200253375 -17783783 + AluSx SINE Alu 1 312 0 1239 94 23 0 chr3 200253715 200253886 -17783272 - AluSp SINE Alu -138 175 1 693 221 77 53 chr3 200253886 200254185 -17782973 - L1M4 LINE L1 -2403 3743 3438 1536 114 0 0 chr3 200254232 200254442 -17782716 - AluSg SINE Alu -100 210 1 313 206 59 10 chr3 200254444 200254546 -17782612 - L1M4 LINE L1 -2847 3299 3193 574 295 30 0 chr3 200254673 200254873 -17782285 - L1MCc LINE L1 -6199 224 19 2200 86 0 0 chr3 200254916 200255229 -17781929 - AluSc SINE Alu 0 313 1 212 175 0 0 chr3 200255229 200255269 -17781889 + T-rich Low_complexity Low_complexity 1 40 0 783 165 30 12 chr3 200255277 200255441 -17781717 + Charlie1 DNA MER1_type 2202 2368 -393 458 300 156 38 chr3 200255840 200256263 -17780895 + L1M4 LINE L1 2429 2901 -3245 2621 146 63 32 chr3 200256313 200256805 -17780353 - MLT2B2 LTR ERVL -8 507 1 1123 179 24 5 chr3 200256942 200257149 -17780009 + AluJo SINE Alu 85 295 -17 1460 209 125 59 chr3 200257164 200257337 -17779821 - L1ME2 LINE L1 -184 5980 5820 2433 66 3 13 chr3 200257337 200257642 -17779516 - AluSq SINE Alu -11 302 1 2246 105 0 7 chr3 200257652 200257957 -17779201 - AluSq SINE Alu -10 303 1 1460 209 125 59 chr3 200257957 200258299 -17778859 - L1ME2 LINE L1 -352 5812 5419 276 236 116 68 chr3 200258336 200258514 -17778644 + MIR SINE MIR 50 243 -19 4339 115 98 36 chr3 200258630 200259163 -17777995 - L1PA16 LINE L1 -1 6165 5666 1279 160 168 0 chr3 200259163 200259419 -17777739 - AluJb SINE Alu -13 299 1 4339 115 98 36 chr3 200259419 200259868 -17777290 - L1PA16 LINE L1 -500 5666 5116 270 192 150 10 chr3 200259881 200259978 -17777180 + MER58A DNA MER1_type 42 163 0 2279 96 3 0 chr3 200260025 200260316 -17776842 + AluSx SINE Alu 1 292 -20 1299 140 0 82 chr3 200260367 200260438 -17776720 + AluJo SINE Alu 85 160 -152 2458 56 0 16 chr3 200260438 200260743 -17776415 + AluSc SINE Alu 1 300 -9 1299 140 0 82 chr3 200260743 200260914 -17776244 + AluJo SINE Alu 160 307 -5 3827 173 73 14 chr3 200261666 200262190 -17774968 - L1MB7 LINE L1 -30 6154 5662 2245 92 7 3 chr3 200262190 200262485 -17774673 - AluSc SINE Alu -13 296 1 3827 173 73 14 chr3 200262485 200262918 -17774240 - L1MB7 LINE L1 -522 5662 5151 22 0 0 30 chr3 200262929 200262949 -17774209 + AT_rich Low_complexity Low_complexity 1 21 -11 2216 72 3 24 chr3 200262949 200263242 -17773916 + AluY SINE Alu 1 287 -24 22 0 0 30 chr3 200263242 200263254 -17773904 + AT_rich Low_complexity Low_complexity 21 32 0 5609 144 43 7 chr3 200263254 200264603 -17772555 - L1MA3 LINE L1 -5 6300 4902 889 201 65 41 chr3 200264583 200264759 -17772399 - L1MB7 LINE L1 -976 5170 4983 * 2351 99 0 13 chr3 200264759 200265072 -17772086 - AluY SINE Alu -2 309 1 889 201 65 41 chr3 200265072 200265188 -17771970 - L1MB7 LINE L1 -1163 4983 4871 252 317 63 39 chr3 200265190 200265381 -17771777 + L2 LINE L2 2793 2988 -284 1691 177 0 3 chr3 200266268 200266568 -17770590 - AluJb SINE Alu -13 299 1 478 234 47 8 chr3 200267134 200267262 -17769896 + MIR SINE MIR 116 248 -14 571 247 119 57 chr3 200267305 200267360 -17769798 + MER46C DNA MER2_type 4 54 -284 2914 65 13 13 chr3 200267360 200267757 -17769401 - L1PA8 LINE L1 -1 6171 5775 1965 97 40 0 chr3 200267764 200268042 -17769116 - AluSx SINE Alu -23 289 1 571 247 119 57 chr3 200268042 200268205 -17768953 + MER46C DNA MER2_type 59 244 -94 371 213 172 5 chr3 200268208 200268385 -17768773 - MER5C DNA MER1_type -3 321 25 2235 113 0 0 chr3 200268835 200269146 -17768012 - AluSq SINE Alu -2 311 1 560 237 175 18 chr3 200269246 200269474 -17767684 - L2 LINE L2 -428 2886 2623 352 333 124 0 chr3 200269592 200269793 -17767365 + HAL1 LINE L1 1481 1706 -801 242 226 16 32 chr3 200269794 200269856 -17767302 - Tigger5 DNA MER2_type -19 2304 2244 * 405 193 36 4 chr3 200269853 200269990 -17767168 - Tigger5 DNA MER2_type -2129 194 1 1743 172 6 13 chr3 200270121 200270435 -17766723 + AluJb SINE Alu 1 312 0 353 289 16 102 chr3 200270440 200270523 -17766635 + HAL1 LINE L1 2257 2346 -161 1463 177 3 42 chr3 200270523 200270834 -17766324 - AluJo SINE Alu -13 299 1 353 289 16 102 chr3 200270834 200271006 -17766152 + HAL1 LINE L1 2346 2490 -17 2249 76 0 47 chr3 200271214 200271531 -17765627 - AluSq SINE Alu -11 302 1 255 200 44 56 chr3 200272038 200272128 -17765030 + L1ME4a LINE L1 5961 6049 -72 1346 145 38 62 chr3 200272182 200272220 -17764938 + AluJo SINE Alu 1 38 -274 2163 106 3 0 chr3 200272220 200272522 -17764636 + AluSx SINE Alu 1 303 -9 1346 145 38 62 chr3 200272522 200272772 -17764386 + AluJo SINE Alu 38 282 -30 288 0 0 0 chr3 200272778 200272810 -17764348 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 872 151 66 0 chr3 200272814 200272966 -17764192 + AluSg/x SINE Alu 136 297 -13 2177 114 0 0 chr3 200273579 200273887 -17763271 - AluSx SINE Alu -4 308 1 2551 55 0 0 chr3 200275054 200275365 -17761793 - AluY SINE Alu 0 311 1 509 318 54 9 chr3 200277062 200277285 -17759873 - MIR SINE MIR -10 252 20 207 0 0 0 chr3 200277715 200277721 -17759437 + (TG)n Simple_repeat Simple_repeat 1 29 0 207 0 0 0 chr3 200277721 200277744 -17759414 + (TG)n Simple_repeat Simple_repeat 2 24 0 355 263 12 0 chr3 200277801 200277881 -17759277 - MIR3 SINE MIR -6 202 122 2051 110 0 0 chr3 200277881 200278162 -17758996 + AluSx SINE Alu 1 281 -31 2126 97 0 6 chr3 200279939 200280250 -17756908 + AluY SINE Alu 1 309 -2 1799 140 10 10 chr3 200280351 200280651 -17756507 + AluJb SINE Alu 1 300 -12 1657 152 54 0 chr3 200280754 200281031 -17756127 + AluJb SINE Alu 1 292 -20 334 229 10 62 chr3 200281266 200281362 -17755796 + Tigger5 DNA MER2_type 1 91 -2232 * 422 123 27 14 chr3 200281353 200281426 -17755732 - Tigger5 DNA MER2_type -8 2315 2242 388 145 0 58 chr3 200281417 200281486 -17755672 + Tigger5 DNA MER2_type 2259 2323 0 * 373 209 26 52 chr3 200281659 200281774 -17755384 + L1ME4a LINE L1 5969 6080 -41 190 200 0 0 chr3 200281951 200281986 -17755172 - MIR3 SINE MIR -2 206 172 2167 87 3 3 chr3 200283807 200284105 -17753053 + AluSx SINE Alu 1 298 -14 362 310 134 23 chr3 200284702 200284918 -17752240 - MIR SINE MIR -21 241 2 2063 97 3 7 chr3 200287185 200287473 -17749685 + AluSx SINE Alu 1 287 -25 1712 90 0 0 chr3 200288949 200289172 -17747986 + AluSc SINE Alu 1 223 -86 1156 184 85 11 chr3 200289318 200289430 -17747728 + AluSg SINE Alu 5 107 -193 1560 146 21 7 chr3 200289430 200289718 -17747440 + AluSg SINE Alu 1 292 -18 1156 184 85 11 chr3 200289718 200289877 -17747281 + AluSg SINE Alu 107 296 -4 27 49 0 0 chr3 200290763 200290804 -17746354 + AT_rich Low_complexity Low_complexity 1 41 0 528 311 52 28 chr3 200291239 200291320 -17745838 - MIR SINE MIR -15 247 169 2176 75 3 3 chr3 200291320 200291646 -17745512 - AluSc SINE Alu 0 326 1 528 311 52 28 chr3 200291646 200291775 -17745383 - MIR SINE MIR -93 169 31 2488 62 0 0 chr3 200292378 200292684 -17744474 - AluY SINE Alu -5 306 1 2333 68 0 19 chr3 200294811 200295118 -17742040 + AluY SINE Alu 1 301 -10 1100 141 0 6 chr3 200295118 200295288 -17741870 + AluSg/x SINE Alu 134 302 -10 212 256 93 145 chr3 200295297 200295422 -17741736 - L2 LINE L2 0 3272 3142 1566 172 17 23 chr3 200295422 200295724 -17741434 + AluJo SINE Alu 3 302 -10 212 256 93 145 chr3 200295724 200296019 -17741139 - L2 LINE L2 -130 3142 2874 2212 91 0 0 chr3 200296508 200296795 -17740363 + AluSx SINE Alu 1 287 -25 212 59 29 0 chr3 200296798 200296832 -17740326 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2149 79 14 0 chr3 200296840 200297132 -17740026 + AluY SINE Alu 1 296 -15 1165 255 154 27 chr3 200297293 200297678 -17739480 + HAL1 LINE L1 1468 1803 -704 429 20 0 0 chr3 200297678 200297728 -17739430 + (CA)n Simple_repeat Simple_repeat 2 51 0 1165 255 154 27 chr3 200297728 200297973 -17739185 + HAL1 LINE L1 1803 2178 -329 240 156 156 0 chr3 200297992 200298056 -17739102 + HAL1 LINE L1 2306 2379 -128 1886 119 34 3 chr3 200298270 200298563 -17738595 + AluSx SINE Alu 1 302 -10 27 0 0 0 chr3 200299704 200299731 -17737427 + GC_rich Low_complexity Low_complexity 1 27 0 25 75 0 0 chr3 200300019 200300072 -17737086 + GC_rich Low_complexity Low_complexity 1 53 0 2004 86 0 61 chr3 200301224 200301537 -17735621 - AluSx SINE Alu -17 295 2 676 187 0 0 chr3 200302247 200302370 -17734788 + FLAM_A SINE Alu 14 136 -6 2261 79 3 0 chr3 200302498 200302790 -17734368 + AluSq SINE Alu 1 293 -20 2555 43 0 0 chr3 200302928 200303233 -17733925 + AluY SINE Alu 1 305 -6 1882 100 0 68 chr3 200303303 200303614 -17733544 + AluSg SINE Alu 1 290 -20 2212 99 0 6 chr3 200304167 200304479 -17732679 - AluSg SINE Alu 0 310 1 2148 64 60 0 chr3 200304792 200305074 -17732084 + AluSc SINE Alu 1 299 -10 234 0 0 0 chr3 200306182 200306208 -17730950 + (A)n Simple_repeat Simple_repeat 1 26 0 25 51 0 0 chr3 200306279 200306318 -17730840 + AT_rich Low_complexity Low_complexity 1 39 0 2271 84 3 0 chr3 200306529 200306828 -17730330 + AluSp SINE Alu 2 301 -12 1238 70 0 122 chr3 200307609 200307823 -17729335 - AluSc SINE Alu 0 309 122 29 90 0 0 chr3 200309185 200309263 -17727895 + AT_rich Low_complexity Low_complexity 1 78 0 2090 125 10 0 chr3 200309662 200309965 -17727193 + AluSx SINE Alu 1 306 -6 764 93 17 25 chr3 200310390 200310508 -17726650 - AluY SINE Alu -11 300 184 239 309 12 12 chr3 200310797 200310878 -17726280 + CT-rich Low_complexity Low_complexity 2 82 0 27 0 0 0 chr3 200311183 200311210 -17725948 + AT_rich Low_complexity Low_complexity 1 27 0 2239 94 0 7 chr3 200311330 200311638 -17725520 - AluY SINE Alu -5 306 1 354 342 87 25 chr3 200311814 200312010 -17725148 + L1ME4a LINE L1 5911 6118 -3 2105 87 0 4 chr3 200312624 200312900 -17724258 + AluSx SINE Alu 6 280 -32 262 0 116 0 chr3 200312901 200312944 -17724214 + A-rich Low_complexity Low_complexity 1 48 0 253 298 0 0 chr3 200313017 200313074 -17724084 - MIR SINE MIR -63 145 89 300 302 187 11 chr3 200313273 200313455 -17723703 - MIR SINE MIR 0 262 49 1312 93 0 11 chr3 200313486 200313668 -17723490 - AluSg/x SINE Alu 0 312 133 1629 159 28 3 chr3 200313889 200314172 -17722986 + AluJo SINE Alu 1 290 -22 1442 132 0 0 chr3 200314180 200314392 -17722766 + AluSg SINE Alu 1 212 -98 37 52 0 0 chr3 200314430 200314488 -17722670 + GC_rich Low_complexity Low_complexity 1 58 0 2242 58 7 0 chr3 200314950 200315248 -17721910 - AluSg1 SINE Alu 0 300 1 553 249 67 24 chr3 200315346 200315511 -17721647 - MIR SINE MIR 0 262 91 948 92 11 38 chr3 200315740 200315925 -17721233 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 504 48 0 0 chr3 200315940 200316003 -17721155 + (TTCC)n Simple_repeat Simple_repeat 3 65 0 2065 126 10 23 chr3 200316003 200316305 -17720853 - AluSx SINE Alu -14 298 1 327 262 48 0 chr3 200316626 200316710 -17720448 + L2 LINE L2 3185 3272 0 585 265 53 0 chr3 200316876 200317008 -17720150 + MER74A LTR ERVL 31 169 -389 598 191 27 0 chr3 200317028 200317175 -17719983 - LTR25 LTR ERV1 -3 791 641 439 145 0 0 chr3 200317174 200317243 -17719915 - LTR25 LTR ERV1 -438 356 288 * 391 127 0 16 chr3 200317238 200317301 -17719857 - MER61D LTR ERV1 -438 63 2 * 1807 181 4 2 chr3 200317301 200317622 -17719536 + MER74A LTR ERVL 91 487 -71 1817 73 0 20 chr3 200317666 200317912 -17719246 - L1PA8 LINE L1 0 6172 5932 336 154 39 39 chr3 200317912 200317990 -17719168 + MER74A LTR ERVL 481 558 0 376 273 0 0 chr3 200318295 200318383 -17718775 - MIR3 SINE MIR -22 186 99 21 0 0 0 chr3 200319731 200319752 -17717406 + AT_rich Low_complexity Low_complexity 1 21 0 2329 95 0 20 chr3 200320157 200320462 -17716696 - AluSx SINE Alu -7 305 7 2293 69 31 3 chr3 200320541 200320829 -17716329 - AluY SINE Alu -14 297 2 225 0 0 0 chr3 200320832 200320857 -17716301 + (T)n Simple_repeat Simple_repeat 1 25 0 360 0 0 0 chr3 200320896 200320936 -17716222 + (TG)n Simple_repeat Simple_repeat 2 41 0 303 225 0 0 chr3 200322870 200322941 -17714217 + CT-rich Low_complexity Low_complexity 2 72 0 2196 114 6 25 chr3 200322941 200323257 -17713901 - AluY SINE Alu -1 310 1 2296 99 0 0 chr3 200323697 200323991 -17713167 - AluSg SINE Alu -16 294 1 789 228 34 32 chr3 200325044 200325295 -17711863 + MIR SINE MIR 1 259 -3 874 266 21 113 chr3 200325411 200325450 -17711708 + L2 LINE L2 2926 2967 -305 932 217 16 0 chr3 200325450 200325634 -17711524 - MER5A DNA MER1_type -2 187 1 874 266 21 113 chr3 200325634 200325974 -17711184 + L2 LINE L2 2967 3270 -2 821 53 0 0 chr3 200326053 200326148 -17711010 - AluSq/x SINE Alu -206 107 13 * 1325 134 0 0 chr3 200326147 200326334 -17710824 + AluSq SINE Alu 122 308 -5 1345 249 51 2 chr3 200326593 200327002 -17710156 - L1MEc LINE L1 -3399 2816 2388 2137 120 0 0 chr3 200327002 200327330 -17709828 - AluSg SINE Alu 0 328 1 463 125 164 17 chr3 200327337 200327455 -17709703 - L1MB8 LINE L1 0 6184 6050 2160 120 0 0 chr3 200327456 200327739 -17709419 + AluSx SINE Alu 1 283 -29 6672 38 2 0 chr3 200327740 200328558 -17708600 + L1PA4 LINE L1 5358 6177 0 254 0 0 80 chr3 200328573 200328623 -17708535 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 6259 77 21 60 chr3 200328740 200329732 -17707426 - SVA Other Other -3 1383 430 1295 97 37 97 chr3 200329793 200330255 -17706903 - SVA Other Other -520 866 433 5553 84 31 10 chr3 200330275 200331075 -17706083 - SVA Other Other -520 866 50 270 0 0 0 chr3 200331080 200331110 -17706048 + (GGGAGA)n Simple_repeat Simple_repeat 2 31 0 3060 239 89 50 chr3 200331114 200332056 -17705102 - L1MEc LINE L1 -4017 2379 1475 405 0 0 0 chr3 200332056 200332101 -17705057 + (TG)n Simple_repeat Simple_repeat 2 46 0 3060 239 89 50 chr3 200332101 200332402 -17704756 - L1MEc LINE L1 -4921 1475 1187 2527 48 0 0 chr3 200332402 200332694 -17704464 - AluY SINE Alu -19 292 1 3060 239 89 50 chr3 200332694 200332926 -17704232 - L1MEc LINE L1 -5209 1187 846 586 196 37 0 chr3 200332974 200333081 -17704077 - FLAM_A SINE Alu -22 120 10 599 306 31 19 chr3 200333094 200333414 -17703744 - L1MEc LINE L1 -5575 821 498 216 276 0 0 chr3 200333424 200333482 -17703676 + MIR SINE MIR 150 207 -55 450 199 167 19 chr3 200333490 200333646 -17703512 + L1ME3A LINE L1 5991 6169 -1 212 205 26 0 chr3 200333660 200333699 -17703459 + L2 LINE L2 3216 3255 -17 446 231 8 8 chr3 200333796 200333917 -17703241 - L1ME3A LINE L1 -5 6165 6045 2047 114 0 45 chr3 200334634 200334942 -17702216 - AluSx SINE Alu -18 294 1 885 114 53 0 chr3 200335072 200335204 -17701954 + AluSg/x SINE Alu 149 287 -25 253 361 46 0 chr3 200335221 200335329 -17701829 + MIR SINE MIR 149 261 -1 191 281 366 0 chr3 200335465 200335618 -17701540 - MIR SINE MIR -8 254 46 196 275 88 12 chr3 200335626 200335706 -17701452 - L2 LINE L2 -216 3056 2971 2088 136 3 13 chr3 200336061 200336370 -17700788 - AluSx SINE Alu -6 306 1 2091 131 7 7 chr3 200336505 200336803 -17700355 - AluSx SINE Alu -14 298 1 1255 192 23 27 chr3 200336830 200337090 -17700068 - L1ME1 LINE L1 -5 6161 5903 1244 195 22 0 chr3 200337103 200337370 -17699788 - L1ME1 LINE L1 -488 5678 5406 582 167 0 0 chr3 200337378 200337468 -17699690 - AluSg/x SINE Alu -17 293 204 2251 107 7 0 chr3 200337481 200337810 -17699348 - AluSq SINE Alu 0 313 1 192 40 0 0 chr3 200338059 200338084 -17699074 + (T)n Simple_repeat Simple_repeat 1 25 0 183 215 0 0 chr3 200339454 200339519 -17697639 + (CCCTAA)n Simple_repeat Simple_repeat 5 69 0 21 0 0 0 chr3 200339856 200339877 -17697281 + AT_rich Low_complexity Low_complexity 1 21 0 1981 124 76 0 chr3 200339948 200340238 -17696920 + AluSx SINE Alu 1 312 0 424 308 39 33 chr3 200341351 200341533 -17695625 + MIR SINE MIR 1 183 -79 1475 122 67 75 chr3 200341593 200341847 -17695311 + AluSg SINE Alu 1 252 -58 8661 68 3 3 chr3 200342017 200343088 -17694070 + MER11C LTR ERVK 1 1071 0 1674 209 52 81 chr3 200343134 200343192 -17693966 + MLT1F1 LTR MaLR 67 125 -442 1796 172 0 21 chr3 200343192 200343505 -17693653 + AluJb SINE Alu 1 307 0 1674 209 52 81 chr3 200343505 200343532 -17693626 + MLT1F1 LTR MaLR 125 151 -416 2172 112 3 7 chr3 200343532 200343827 -17693331 + AluSx SINE Alu 1 294 -18 1674 209 52 81 chr3 200343827 200344254 -17692904 + MLT1F1 LTR MaLR 151 567 0 1258 133 4 104 chr3 200344460 200344701 -17692457 + AluJb SINE Alu 79 295 -17 2287 95 10 3 chr3 200344705 200345000 -17692158 + AluSx SINE Alu 1 297 -15 27 0 0 0 chr3 200345006 200345033 -17692125 + AT_rich Low_complexity Low_complexity 1 27 0 321 264 127 25 chr3 200345528 200345623 -17691535 + L1ME4a LINE L1 5727 5811 -310 2088 112 9 46 chr3 200345623 200345946 -17691212 + AluSx SINE Alu 2 312 0 321 264 127 25 chr3 200345946 200345961 -17691197 + L1ME4a LINE L1 5811 5823 -298 982 168 67 11 chr3 200345961 200346140 -17691018 + MER5A DNA MER1_type 1 189 0 321 264 127 25 chr3 200346140 200346225 -17690933 + L1ME4a LINE L1 5823 5943 -178 2120 133 0 7 chr3 200346334 200346628 -17690530 - AluJb SINE Alu -20 292 1 2199 100 7 7 chr3 200347279 200347570 -17689588 + AluSx SINE Alu 1 291 -21 408 232 98 9 chr3 200347574 200347686 -17689472 - MIR SINE MIR -94 168 47 235 173 77 19 chr3 200347761 200347813 -17689345 + L2 LINE L2 3259 3313 0 256 267 120 0 chr3 200347830 200347922 -17689236 - MIR SINE MIR -83 125 25 2262 95 3 0 chr3 200349541 200349858 -17687300 + AluSq SINE Alu 1 318 0 2124 131 0 3 chr3 200350590 200350880 -17686278 - AluSx SINE Alu -23 289 1 203 358 37 0 chr3 200351019 200351100 -17686058 + L2 LINE L2 3139 3222 -50 217 340 81 60 chr3 200351116 200351368 -17685790 + L2 LINE L2 2196 2458 -856 2317 102 0 7 chr3 200351368 200351663 -17685495 + AluSg SINE Alu 1 293 -17 217 340 81 60 chr3 200351663 200351742 -17685416 + L2 LINE L2 2458 2534 -780 192 312 194 15 chr3 200351923 200352186 -17684972 + L2 LINE L2 2594 2903 -411 327 247 25 12 chr3 200352260 200352341 -17684817 + L2 LINE L2 3003 3084 -188 1245 197 73 98 chr3 200352789 200353267 -17683891 + L1ME2 LINE L1 5699 6164 0 192 216 0 39 chr3 200353267 200353318 -17683840 - L2 LINE L2 -984 2330 2282 2194 133 0 0 chr3 200353373 200353674 -17683484 - AluSq SINE Alu -12 301 1 225 230 150 30 chr3 200353855 200353955 -17683203 - MARNA DNA Mariner -104 482 371 311 307 33 47 chr3 200354416 200354566 -17682592 - MARNA DNA Mariner -221 365 218 1983 86 0 128 chr3 200354597 200354934 -17682224 + AluSx SINE Alu 2 295 -7 12289 112 33 72 chr3 200355338 200355784 -17681374 + Tigger1 DNA MER2_type 24 486 -1932 1995 107 4 0 chr3 200355784 200356047 -17681111 - AluSx SINE Alu -15 297 34 12289 112 33 72 chr3 200356047 200356163 -17680995 + Tigger1 DNA MER2_type 486 605 -1813 1834 197 0 0 chr3 200356163 200356457 -17680701 + AluJo SINE Alu 2 295 -17 12289 112 33 72 chr3 200356457 200356505 -17680653 + Tigger1 DNA MER2_type 605 653 -1765 2281 118 0 0 chr3 200356505 200356811 -17680347 + AluSx SINE Alu 1 306 -6 12289 112 33 72 chr3 200356811 200357409 -17679749 + Tigger1 DNA MER2_type 653 1273 -1145 2091 141 0 3 chr3 200357409 200357715 -17679443 - AluSx SINE Alu -3 309 5 12289 112 33 72 chr3 200357715 200358302 -17678856 + Tigger1 DNA MER2_type 1273 1713 -705 2272 126 0 7 chr3 200358302 200358611 -17678547 + AluSq SINE Alu 1 307 -6 12289 112 33 72 chr3 200358611 200359128 -17678030 + Tigger1 DNA MER2_type 1713 2249 -169 2191 116 34 0 chr3 200359169 200359463 -17677695 - AluSx SINE Alu -8 304 1 650 260 59 14 chr3 200359581 200359800 -17677358 - MLT1H LTR MaLR -269 280 52 669 279 29 0 chr3 200359855 200360027 -17677131 + MER5B DNA MER1_type 1 177 -1 276 250 232 45 chr3 200360045 200360157 -17677001 - MER5A DNA MER1_type -11 178 46 513 183 191 8 chr3 200360201 200360327 -17676831 + MER58C DNA MER1_type 67 215 0 951 269 29 42 chr3 200360617 200360996 -17676162 + MLT1K LTR MaLR 179 552 -36 1870 113 0 65 chr3 200361117 200361408 -17675750 - AluSx SINE Alu -40 272 1 2325 109 0 0 chr3 200361772 200362074 -17675084 - AluSq SINE Alu -11 302 1 1681 169 7 16 chr3 200362175 200362482 -17674676 - AluJo SINE Alu -2 310 7 2386 93 0 0 chr3 200362494 200362794 -17674364 - AluSq SINE Alu -13 300 1 870 196 20 0 chr3 200362988 200363141 -17674017 + FRAM SINE Alu 5 160 -16 2057 142 7 10 chr3 200363293 200363602 -17673556 + AluSx SINE Alu 1 308 -4 468 128 39 0 chr3 200364187 200364265 -17672893 + AluJ/FLAM SINE Alu 5 85 -227 225 300 0 0 chr3 200364972 200365032 -17672126 + GA-rich Low_complexity Low_complexity 2 61 0 201 329 27 0 chr3 200366259 200366332 -17670826 - L2 LINE L2 -18 3295 3221 2234 113 3 10 chr3 200366333 200366634 -17670524 + AluSq SINE Alu 1 299 -14 916 87 0 0 chr3 200366644 200366759 -17670399 + AluSq/x SINE Alu 1 115 -198 2165 112 7 23 chr3 200367679 200367984 -17669174 + AluSx SINE Alu 1 300 -12 1578 91 0 36 chr3 200368829 200369048 -17668110 - AluSg/x SINE Alu -15 297 87 3423 167 64 3 chr3 200369067 200369724 -17667434 - L1MB3 LINE L1 -4 6179 5483 2403 110 0 0 chr3 200369725 200370034 -17667124 - AluSc SINE Alu 0 309 1 1179 66 0 0 chr3 200370034 200370170 -17666988 - AluSq/x SINE Alu -176 136 1 626 299 0 0 chr3 200370171 200370318 -17666840 + LTR33 LTR ERVL 71 217 -304 211 216 91 34 chr3 200370415 200370503 -17666655 - L2 LINE L2 -2887 427 335 251 297 0 0 chr3 200370570 200370634 -17666524 - MIR SINE MIR -13 249 186 2242 114 7 3 chr3 200370639 200370946 -17666212 - AluSx SINE Alu -4 308 1 347 221 0 58 chr3 200370947 200371033 -17666125 - L1MCa LINE L1 -4340 2086 2006 396 184 0 92 chr3 200371039 200371137 -17666021 - L1MC4 LINE L1 -1340 6702 6614 2404 96 0 0 chr3 200371166 200371459 -17665699 - AluSx SINE Alu -18 294 2 2174 115 3 3 chr3 200371524 200371820 -17665338 - AluSg SINE Alu -14 296 1 2347 80 10 10 chr3 200372884 200373185 -17663973 - AluSx SINE Alu -11 301 1 290 318 71 45 chr3 200373364 200373562 -17663596 - L2 LINE L2 0 3313 3111 1750 158 25 4 chr3 200373855 200374133 -17663025 - AluSx SINE Alu -17 295 12 380 243 62 62 chr3 200374302 200374446 -17662712 + MIR SINE MIR 6 149 -113 323 332 109 10 chr3 200375011 200375204 -17661954 + MIR SINE MIR 7 218 -44 559 204 68 93 chr3 200375296 200375575 -17661583 + L1MC5 LINE L1 7660 7931 -30 853 154 0 0 chr3 200375676 200375806 -17661352 - FLAM_C SINE Alu 0 133 4 2554 59 3 0 chr3 200376565 200376870 -17660288 + AluY SINE Alu 1 306 -5 1605 187 3 14 chr3 200377095 200377389 -17659769 + AluJo SINE Alu 1 291 -21 2133 137 12 21 chr3 200377574 200377911 -17659247 + MER1B DNA MER1_type 4 337 0 2036 131 45 0 chr3 200378051 200378342 -17658816 - AluSg SINE Alu -6 304 1 707 221 84 0 chr3 200378562 200378752 -17658406 + L1MA4 LINE L1 6084 6289 -11 2136 125 10 0 chr3 200379092 200379388 -17657770 - AluSq SINE Alu -14 299 1 2544 64 0 0 chr3 200379596 200379894 -17657264 + AluY SINE Alu 1 298 -13 1959 111 0 80 chr3 200380565 200380890 -17656268 - AluSx SINE Alu -13 299 1 2111 127 3 22 chr3 200381566 200381882 -17655276 + AluSx SINE Alu 1 310 -2 407 314 43 33 chr3 200381921 200382131 -17655027 - MIR SINE MIR -20 242 31 207 274 59 59 chr3 200382628 200382730 -17654428 - MIR SINE MIR -44 218 117 2335 96 6 16 chr3 200382732 200383045 -17654113 + AluSx SINE Alu 1 310 -2 285 89 0 22 chr3 200383076 200383121 -17654037 - MIR SINE MIR -149 59 16 228 244 187 8 chr3 200383581 200383672 -17653486 - MIR SINE MIR -60 148 35 364 122 14 14 chr3 200384489 200384563 -17652595 + (TC)n Simple_repeat Simple_repeat 1 74 0 1375 84 52 31 chr3 200384569 200384760 -17652398 - AluSq SINE Alu -118 195 1 305 331 40 27 chr3 200384762 200384910 -17652248 - HAL1 LINE L1 -1218 1289 1140 186 43 0 0 chr3 200384912 200384935 -17652223 + (TC)n Simple_repeat Simple_repeat 1 23 0 908 178 18 0 chr3 200384936 200385099 -17652059 - FRAM SINE Alu -12 164 1 578 215 20 47 chr3 200385128 200385277 -17651881 + MIR SINE MIR 34 178 -84 289 214 0 14 chr3 200385284 200385354 -17651804 - LTR33 LTR ERVL -15 506 438 2346 100 0 3 chr3 200385354 200385655 -17651503 + AluSg SINE Alu 1 300 -10 972 139 6 12 chr3 200385748 200385914 -17651244 + L1MB3 LINE L1 6012 6176 -7 202 297 54 0 chr3 200386068 200386142 -17651016 + MIR SINE MIR 145 222 -40 232 61 0 0 chr3 200386450 200386483 -17650675 - Alu SINE Alu -268 33 1 2358 91 10 0 chr3 200387010 200387307 -17649851 + AluSx SINE Alu 1 300 -12 284 239 177 23 chr3 200387424 200387554 -17649604 - MIR3 SINE MIR -58 150 1 25 0 0 0 chr3 200388890 200388915 -17648243 + AT_rich Low_complexity Low_complexity 1 25 0 2201 120 10 0 chr3 200388918 200389218 -17647940 + AluSx SINE Alu 1 303 -9 2324 89 16 22 chr3 200389426 200389740 -17647418 - AluSq SINE Alu -1 312 1 217 311 208 0 chr3 200390432 200390538 -17646620 + L2 LINE L2 3134 3261 -11 231 257 18 138 chr3 200391252 200391361 -17645797 - MIR3 SINE MIR -9 199 104 493 299 78 29 chr3 200391361 200391565 -17645593 + MIR SINE MIR 20 233 -29 268 326 10 10 chr3 200391571 200391669 -17645489 + MLT1J2 LTR MaLR 110 207 -243 281 170 32 16 chr3 200391933 200391996 -17645162 + Alu SINE Alu 1 48 -254 490 242 53 15 chr3 200392072 200392204 -17644954 + MER3 DNA MER1_type 5 141 -68 1589 89 5 0 chr3 200392352 200392554 -17644604 - AluSg/x SINE Alu -4 306 104 2021 126 0 4 chr3 200394761 200395085 -17642073 + AluSx SINE Alu 11 333 0 2254 84 0 3 chr3 200395093 200395418 -17641740 + AluSp SINE Alu 1 324 0 2351 110 0 0 chr3 200396344 200396644 -17640514 + AluSx SINE Alu 1 300 -12 2055 140 0 13 chr3 200397009 200397323 -17639835 - AluSx SINE Alu -2 310 1 436 277 26 45 chr3 200397344 200397499 -17639659 + MIR SINE MIR 110 261 -1 271 333 104 68 chr3 200397614 200398038 -17639120 - L2 LINE L2 -4 3268 2830 201 213 85 0 chr3 200398086 200398133 -17639025 + L2 LINE L2 1162 1212 -2102 2567 71 0 0 chr3 200398827 200399137 -17638021 - AluY SINE Alu 0 311 2 300 210 37 49 chr3 200399398 200399469 -17637689 + MIR3 SINE MIR 125 196 -12 2427 75 3 0 chr3 200399469 200399761 -17637397 + AluSc SINE Alu 1 293 -16 2471 77 3 0 chr3 200400816 200401115 -17636043 - AluSq SINE Alu -13 300 1 2256 113 0 0 chr3 200401854 200402162 -17634996 + AluSx SINE Alu 1 308 0 957 126 57 38 chr3 200402462 200402621 -17634537 - AluJb SINE Alu -150 162 1 1868 193 62 33 chr3 200403135 200403585 -17633573 + MLT1C LTR MaLR 5 467 0 1656 164 69 13 chr3 200403630 200403947 -17633211 - MER44D DNA MER2_type -4 605 1 2209 117 0 23 chr3 200404028 200404337 -17632821 - AluSx SINE Alu -10 302 1 591 200 9 17 chr3 200405270 200405385 -17631773 + MIR SINE MIR 37 150 -112 736 173 0 0 chr3 200405386 200405496 -17631662 + AluJb SINE Alu 2 111 -201 2139 105 10 14 chr3 200405596 200405892 -17631266 + AluSx SINE Alu 11 305 -7 2174 92 46 0 chr3 200406727 200407009 -17630149 + AluSx SINE Alu 1 295 -17 896 111 0 0 chr3 200407403 200407520 -17629638 - AluJb SINE Alu -195 117 1 770 54 0 0 chr3 200407788 200407881 -17629277 - AluS SINE Alu -218 94 2 2264 93 0 3 chr3 200407892 200408183 -17628975 - AluSg SINE Alu -20 290 1 2008 104 35 28 chr3 200408216 200408505 -17628653 - AluSx SINE Alu -21 291 1 1231 197 53 68 chr3 200408691 200409071 -17628087 + MLT1A2 LTR MaLR 1 374 0 2044 62 0 4 chr3 200409216 200409457 -17627701 - AluY SINE Alu -17 294 55 244 310 147 0 chr3 200410310 200410439 -17626719 - MIR SINE MIR -39 223 76 2302 92 3 0 chr3 200410546 200410852 -17626306 + AluSx SINE Alu 4 310 -2 931 149 99 0 chr3 200410852 200411013 -17626145 + AluSg/x SINE Alu 132 308 -2 429 274 135 42 chr3 200411049 200411308 -17625850 + L2 LINE L2 2807 3089 -183 449 319 157 14 chr3 200411342 200411558 -17625600 - L2 LINE L2 -1 3271 3025 7911 56 40 2 chr3 200411711 200412681 -17624477 + LTR13 LTR ERVK 1 1007 0 241 35 0 0 chr3 200412721 200412750 -17624408 - LTR6A LTR ERV1 -463 101 73 546 217 258 45 chr3 200413707 200413951 -17623207 - LTR40c LTR ERVL 0 465 170 * 1416 210 42 84 chr3 200413948 200414088 -17623070 + LTR40a LTR ERVL 105 249 -270 2024 149 0 16 chr3 200414088 200414397 -17622761 + AluSx SINE Alu 5 308 -4 1416 210 42 84 chr3 200414397 200414408 -17622750 + LTR40a LTR ERVL 249 259 -260 2063 119 45 0 chr3 200414408 200414694 -17622464 + AluSx SINE Alu 1 299 -13 1416 210 42 84 chr3 200414694 200414969 -17622189 + LTR40a LTR ERVL 259 514 -5 259 198 135 27 chr3 200415448 200415559 -17621599 - AluSp/q SINE Alu -5 298 176 22 0 0 0 chr3 200415600 200415622 -17621536 + AT_rich Low_complexity Low_complexity 1 22 0 288 67 17 67 chr3 200415889 200415949 -17621209 + AluSp/q SINE Alu 227 283 -20 213 292 58 42 chr3 200415966 200416086 -17621072 - L2 LINE L2 -1692 1622 1501 234 0 0 0 chr3 200416106 200416132 -17621026 + (CA)n Simple_repeat Simple_repeat 1 26 0 2480 75 0 3 chr3 200416226 200416531 -17620627 - AluSc SINE Alu -5 304 1 2321 106 0 0 chr3 200416819 200417121 -17620037 + AluSx SINE Alu 1 302 -10 621 233 98 12 chr3 200417204 200417367 -17619791 - MIR SINE MIR -6 256 80 2258 98 0 0 chr3 200418023 200418320 -17618838 - AluSg SINE Alu -13 297 1 544 274 82 47 chr3 200418812 200418874 -17618284 - L1ME4a LINE L1 -196 5925 5867 2240 100 0 0 chr3 200418874 200419174 -17617984 + AluSx SINE Alu 1 300 -12 544 274 82 47 chr3 200419174 200419429 -17617729 - L1ME4a LINE L1 -254 5867 5597 1471 112 189 42 chr3 200419943 200420203 -17616955 + AluSx SINE Alu 5 302 0 2127 95 0 3 chr3 200420572 200420883 -17616275 - AluSq SINE Alu 0 310 1 1966 106 39 7 chr3 200421422 200421706 -17615452 + AluSc SINE Alu 1 293 -16 2087 98 20 0 chr3 200421758 200422053 -17615105 - AluSx SINE Alu -11 301 1 282 259 37 0 chr3 200422116 200422197 -17614961 + L1ME4a LINE L1 5951 6034 -87 571 253 89 7 chr3 200423112 200423258 -17613900 + MIR3 SINE MIR 41 198 -10 1727 162 10 10 chr3 200423834 200424143 -17613015 + AluJb SINE Alu 1 309 -3 943 74 88 14 chr3 200424482 200424630 -17612528 - MER30 DNA MER1_type -70 160 2 1884 134 147 24 chr3 200424630 200425011 -17612147 + MSTA LTR MaLR 1 428 0 323 356 41 0 chr3 200425164 200425310 -17611848 + MER5B DNA MER1_type 27 178 0 907 239 39 30 chr3 200426299 200426630 -17610528 - L1MC5 LINE L1 -25 7936 7603 280 239 150 42 chr3 200428017 200428277 -17608881 - L1ME4a LINE L1 -19 6102 5815 2051 118 3 7 chr3 200428487 200428791 -17608367 - AluSq SINE Alu -10 303 1 828 179 70 30 chr3 200428827 200429028 -17608130 - L1MC4a LINE L1 -1889 5919 5711 714 171 8 0 chr3 200429207 200429330 -17607828 - FLAM_A SINE Alu -9 124 1 349 238 143 54 chr3 200430167 200430314 -17606844 - L1ME4a LINE L1 -17 6104 5945 651 364 37 4 chr3 200430617 200430859 -17606299 + MIR SINE MIR 5 254 -8 2019 139 0 0 chr3 200431932 200432234 -17604924 - AluSx SINE Alu -10 302 1 1636 167 51 48 chr3 200432257 200432629 -17604529 + THE1C LTR MaLR 3 375 0 214 335 68 107 chr3 200433194 200433651 -17603507 - L2 LINE L2 0 3272 2834 2357 65 0 3 chr3 200433944 200434236 -17602922 - AluSx SINE Alu -21 291 1 4226 147 72 36 chr3 200434489 200435330 -17601828 - MER4D LTR ERV1 0 872 1 375 103 0 0 chr3 200435362 200435420 -17601738 - L1PA16 LINE L1 -2 6164 6107 494 137 0 0 chr3 200438020 200438093 -17599065 - L1PA16 LINE L1 -56 6110 6038 302 191 0 0 chr3 200438435 200438498 -17598660 - AluJo SINE Alu 0 302 240 1101 159 5 16 chr3 200438501 200438690 -17598468 - AluJo SINE Alu -125 187 1 279 0 0 0 chr3 200438842 200438873 -17598285 + (CA)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr3 200439626 200439647 -17597511 + AT_rich Low_complexity Low_complexity 1 21 0 218 317 54 119 chr3 200440030 200440510 -17596648 + L2 LINE L2 2804 3252 -20 1765 167 0 10 chr3 200440567 200440878 -17596280 - AluSx SINE Alu -4 308 1 466 182 0 81 chr3 200441514 200441576 -17595582 + MER20 DNA MER1_type 1 54 -165 1662 117 113 8 chr3 200441576 200441841 -17595317 - AluSx SINE Alu -19 293 1 466 182 0 81 chr3 200441841 200441877 -17595281 + MER20 DNA MER1_type 54 91 -128 1473 100 306 7 chr3 200441881 200442162 -17594996 - MER47A DNA MER2_type 0 366 2 251 88 0 0 chr3 200442162 200442196 -17594962 + MER20 DNA MER1_type 95 128 -91 2020 114 34 0 chr3 200442315 200442612 -17594546 - AluSq SINE Alu -6 307 1 299 275 104 58 chr3 200443582 200443822 -17593336 + L2 LINE L2 2590 2840 -474 263 247 59 123 chr3 200444007 200444177 -17592981 + L2 LINE L2 3155 3313 0 995 193 10 31 chr3 200444201 200444393 -17592765 - MER5A DNA MER1_type 0 189 2 220 259 7 104 chr3 200446413 200446548 -17590610 - MER5A DNA MER1_type 0 189 68 1751 124 72 0 chr3 200447915 200448200 -17588958 - AluSx SINE Alu 0 304 1 359 266 50 86 chr3 200448542 200448681 -17588477 + MIR SINE MIR 3 136 -72 190 244 0 0 chr3 200448664 200448705 -17588453 + L2 LINE L2 3136 3176 -96 * 245 318 176 17 chr3 200448968 200449144 -17588014 + L3 LINE CR1 1218 1421 -156 2221 99 3 0 chr3 200449201 200449503 -17587655 + AluSx SINE Alu 1 303 -9 1042 258 160 37 chr3 200449727 200450230 -17586928 + L2 LINE L2 2547 3135 -178 1756 135 27 27 chr3 200450230 200450527 -17586631 - AluSx SINE Alu -15 297 1 1042 258 160 37 chr3 200450527 200450732 -17586426 + L2 LINE L2 3135 3313 0 2121 106 0 3 chr3 200452443 200452736 -17584422 - AluSx SINE Alu -20 292 1 2225 72 7 3 chr3 200452840 200453133 -17584025 - AluY SINE Alu -7 304 11 32 26 0 0 chr3 200453200 200453239 -17583919 + AT_rich Low_complexity Low_complexity 1 39 0 406 68 17 212 chr3 200454052 200454102 -17583056 - MER53 DNA DNA 0 189 173 1999 114 3 7 chr3 200454102 200454399 -17582759 - AluSx SINE Alu -16 296 1 406 68 17 212 chr3 200454399 200454466 -17582692 - MER53 DNA DNA -16 173 95 2136 105 0 3 chr3 200455139 200455433 -17581725 - AluSx SINE Alu -19 293 1 244 194 56 0 chr3 200455943 200456015 -17581143 + CT-rich Low_complexity Low_complexity 2 77 0 1748 144 4 4 chr3 200456068 200456345 -17580813 - AluJo SINE Alu -35 277 1 2435 68 0 0 chr3 200457548 200457843 -17579315 - AluSx SINE Alu -17 295 1 848 132 0 0 chr3 200458107 200458243 -17578915 - AluSg/x SINE Alu 0 312 177 1887 150 0 7 chr3 200458851 200459151 -17578007 + AluSx SINE Alu 1 298 -14 1601 169 21 0 chr3 200459381 200459665 -17577493 - AluJb SINE Alu -22 290 1 2007 122 3 3 chr3 200459670 200459964 -17577194 - AluSx SINE Alu -17 295 2 250 323 194 0 chr3 200460210 200460365 -17576793 - L3 LINE CR1 -1 1576 1392 332 283 234 49 chr3 200460369 200460500 -17576658 - L3 LINE CR1 -431 1146 1041 2045 118 7 3 chr3 200460500 200460804 -17576354 - AluSx SINE Alu -7 305 1 332 283 234 49 chr3 200460804 200461061 -17576097 - L3 LINE CR1 -536 1041 686 230 191 0 0 chr3 200461056 200461098 -17576060 - MIR SINE MIR -135 73 32 * 222 386 0 0 chr3 200461172 200461260 -17575898 + L3 LINE CR1 449 536 -1041 22 35 0 0 chr3 200466871 200466900 -17570258 + AT_rich Low_complexity Low_complexity 1 29 0 2309 60 40 23 chr3 200469238 200469537 -17567621 + AluSc SINE Alu 1 304 -5 1008 141 12 99 chr3 200469949 200470156 -17567002 - L1MC2 LINE L1 -20 6324 6101 2415 83 0 10 chr3 200470156 200470457 -17566701 - AluSg SINE Alu -12 298 1 2147 110 7 3 chr3 200470460 200470759 -17566399 - AluSc SINE Alu -9 300 1 1008 141 12 99 chr3 200470759 200470789 -17566369 - L1MC2 LINE L1 -209 6135 6104 1698 157 45 17 chr3 200471377 200471701 -17565457 + AluJo SINE Alu 1 332 0 647 253 50 0 chr3 200472390 200472588 -17564570 + L1M4 LINE L1 2707 2914 -3232 857 169 0 0 chr3 200472606 200472730 -17564428 + FRAM SINE Alu 23 146 -30 319 290 56 12 chr3 200472747 200472876 -17564282 + L1M4 LINE L1 2896 3035 -3111 2331 74 0 14 chr3 200472876 200473173 -17563985 + AluY SINE Alu 19 311 0 319 290 56 12 chr3 200473173 200473205 -17563953 + L1M4 LINE L1 3035 3064 -3082 3731 156 33 60 chr3 200473205 200473560 -17563598 - Cheshire DNA MER1_type -1 2419 2056 2089 134 3 0 chr3 200473560 200473858 -17563300 + AluSx SINE Alu 5 303 -9 3731 156 33 60 chr3 200473858 200474068 -17563090 - Cheshire DNA MER1_type -364 2056 1842 600 141 50 16 chr3 200474068 200474189 -17562969 - L1MB4 LINE L1 -1 6179 6055 3731 156 33 60 chr3 200474189 200474315 -17562843 - Cheshire DNA MER1_type -578 1842 1750 1604 121 39 0 chr3 200474315 200474547 -17562611 - AluSx SINE Alu -10 302 62 3731 156 33 60 chr3 200474547 200474667 -17562491 - Cheshire DNA MER1_type -670 1750 1628 2918 201 35 32 chr3 200474667 200474730 -17562428 - L1MB4 LINE L1 -743 5403 5342 2253 88 0 20 chr3 200474730 200475027 -17562131 - AluSg SINE Alu -19 291 1 2918 201 35 32 chr3 200475027 200475199 -17561959 - L1MB4 LINE L1 -804 5342 5172 1819 123 47 7 chr3 200475199 200475476 -17561682 - AluJb SINE Alu -2 310 23 2918 201 35 32 chr3 200475476 200476126 -17561032 - L1MB4 LINE L1 -974 5172 4654 2470 79 0 0 chr3 200476155 200476459 -17560699 - AluY SINE Alu -7 304 1 196 284 30 15 chr3 200476591 200476658 -17560500 - L2 LINE L2 0 3313 3246 26 0 0 0 chr3 200477455 200477481 -17559677 + AT_rich Low_complexity Low_complexity 1 26 0 303 256 108 8 chr3 200477634 200477763 -17559395 + MIR SINE MIR 117 258 -4 185 244 103 64 chr3 200477920 200477998 -17559160 + L2 LINE L2 3159 3239 -33 1814 155 3 24 chr3 200478143 200478440 -17558718 - AluJo SINE Alu -21 291 1 768 161 60 0 chr3 200478815 200478964 -17558194 - MIR SINE MIR -6 256 99 207 211 18 0 chr3 200479024 200479081 -17558077 + A-rich Low_complexity Low_complexity 3 60 0 2323 116 0 0 chr3 200479159 200479469 -17557689 + AluSx SINE Alu 1 310 -2 1554 172 11 8 chr3 200479849 200480116 -17557042 + AluJb SINE Alu 1 268 -44 1540 147 64 4 chr3 200480428 200480718 -17556440 + AluJb SINE Alu 1 306 0 373 138 125 0 chr3 200480802 200480882 -17556276 - L2 LINE L2 0 3313 3224 1355 114 80 80 chr3 200481225 200481322 -17555836 - MER33 DNA MER1_type -2261 324 228 1616 207 0 0 chr3 200481322 200481622 -17555536 + AluJo SINE Alu 1 300 -12 1355 114 80 80 chr3 200481622 200481848 -17555310 - MER33 DNA MER1_type -2356 229 1 983 158 153 5 chr3 200481850 200482040 -17555118 + MER20 DNA MER1_type 1 218 -1 2276 113 0 3 chr3 200482468 200482778 -17554380 + AluSx SINE Alu 2 310 -2 652 278 17 11 chr3 200484317 200484493 -17552665 - MER5B DNA MER1_type -1 177 1 2234 107 17 3 chr3 200484580 200484879 -17552279 + AluSx SINE Alu 1 303 -9 1279 32 0 13 chr3 200485991 200486147 -17551011 + L1PA5 LINE L1 6001 6154 0 290 279 67 0 chr3 200486936 200487040 -17550118 + L1ME4a LINE L1 5999 6109 -12 2459 79 7 0 chr3 200487368 200487671 -17549487 - AluY SINE Alu -6 305 1 2275 111 3 3 chr3 200487897 200488204 -17548954 + AluSx SINE Alu 3 309 -3 181 287 148 10 chr3 200488301 200488402 -17548756 + L2 LINE L2 2939 3053 -219 1822 141 3 35 chr3 200489193 200489505 -17547653 - AluJb SINE Alu 0 312 11 636 199 15 0 chr3 200490217 200490348 -17546810 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr3 200490348 200490369 -17546789 + AT_rich Low_complexity Low_complexity 1 21 0 1510 129 152 4 chr3 200490375 200490638 -17546520 + AluSx SINE Alu 1 302 0 1293 139 227 8 chr3 200491141 200491392 -17545766 - AluYa8 SINE Alu -4 306 1 4651 163 75 7 chr3 200491667 200492360 -17544798 + L1MD2 LINE L1 5397 6166 -193 302 0 26 0 chr3 200492360 200492398 -17544760 + (CA)n Simple_repeat Simple_repeat 2 40 0 4651 163 75 7 chr3 200492398 200492594 -17544564 + L1MD2 LINE L1 6166 6347 -12 498 258 24 0 chr3 200492723 200492847 -17544311 - MIR SINE MIR -2 260 134 2217 118 10 0 chr3 200493732 200494036 -17543122 - AluSx SINE Alu -5 307 1 189 182 0 0 chr3 200494277 200494310 -17542848 - MIR SINE MIR -12 250 218 2356 82 0 0 chr3 200494364 200494655 -17542503 - AluSx SINE Alu -21 291 1 680 158 20 34 chr3 200495512 200495658 -17541500 + L1MB7 LINE L1 6041 6184 0 23 54 0 0 chr3 200498005 200498042 -17539116 + GC_rich Low_complexity Low_complexity 1 37 0 238 266 53 53 chr3 200498943 200499037 -17538121 - MIR3 SINE MIR -7 201 108 185 200 17 67 chr3 200499124 200499184 -17537974 - MIR SINE MIR -54 208 152 2277 74 10 10 chr3 200499187 200499484 -17537674 - AluSx SINE Alu -15 297 1 267 103 0 0 chr3 200499509 200499548 -17537610 + (GAA)n Simple_repeat Simple_repeat 2 40 0 712 273 107 35 chr3 200499643 200500206 -17536952 + L1P5 LINE L1 4795 5417 -737 2129 134 0 0 chr3 200500206 200500505 -17536653 - AluSg SINE Alu -11 299 1 712 273 107 35 chr3 200500505 200500546 -17536612 + L1P5 LINE L1 5417 5454 -700 1783 99 0 25 chr3 200500920 200501163 -17535995 - AluSx SINE Alu -75 237 1 212 211 53 35 chr3 200501232 200501289 -17535869 - L2 LINE L2 -62 3251 3194 2281 112 0 3 chr3 200501579 200501892 -17535266 + AluSx SINE Alu 1 312 0 366 362 47 7 chr3 200501910 200502186 -17534972 - L2 LINE L2 -621 2693 2407 2272 94 0 3 chr3 200502408 200502726 -17534432 - AluSq SINE Alu 0 317 1 2106 102 46 0 chr3 200503080 200503364 -17533794 - AluSx SINE Alu -15 297 1 230 287 58 0 chr3 200503703 200503790 -17533368 + L2 LINE L2 2766 2857 -457 192 77 0 0 chr3 200504270 200504296 -17532862 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 2093 141 7 3 chr3 200504298 200504604 -17532554 - AluSx SINE Alu -4 308 2 836 149 0 8 chr3 200505265 200505386 -17531772 + FLAM_C SINE Alu 1 120 -23 210 64 21 43 chr3 200505386 200505433 -17531725 + (TA)n Simple_repeat Simple_repeat 1 46 0 2174 123 3 3 chr3 200505737 200506046 -17531112 + AluSx SINE Alu 1 309 -3 659 206 23 0 chr3 200506671 200506846 -17530312 + CT-rich Low_complexity Low_complexity 2 180 0 2191 99 7 3 chr3 200506849 200507142 -17530016 - AluSx SINE Alu -18 294 1 2044 82 0 107 chr3 200507450 200507613 -17529545 - AluSp SINE Alu -20 293 181 4380 44 4 4 chr3 200507613 200508141 -17529017 - L1PA5 LINE L1 0 6154 5627 2044 82 0 107 chr3 200508141 200508305 -17528853 - AluSp SINE Alu -132 181 1 834 235 30 83 chr3 200508355 200508657 -17528501 + MER102b DNA MER1_type 47 332 -9 2531 65 0 10 chr3 200508686 200508994 -17528164 - AluY SINE Alu -6 305 1 1684 42 28 5 chr3 200508994 200509209 -17527949 - L1PA13 LINE L1 -2 6161 5942 390 91 91 0 chr3 200509328 200509493 -17527665 + (TA)n Simple_repeat Simple_repeat 1 180 0 21 0 0 0 chr3 200509494 200509515 -17527643 + AT_rich Low_complexity Low_complexity 1 21 0 416 225 0 0 chr3 200509517 200509597 -17527561 - MER103 DNA DNA -80 86 7 2723 89 8 6 chr3 200509599 200509960 -17527198 - THE1B LTR MaLR -2 362 1 2103 88 34 17 chr3 200510067 200510361 -17526797 + AluSq SINE Alu 1 299 -14 256 254 172 0 chr3 200512421 200512543 -17524615 - MIR SINE MIR -16 246 104 3865 57 10 2 chr3 200512854 200513343 -17523815 + L1HS LINE L1 5663 6155 0 245 149 0 0 chr3 200513722 200513769 -17523389 - LTR66 LTR ERVL -169 441 395 449 219 16 0 chr3 200513769 200513892 -17523266 + (CATATA)n Simple_repeat Simple_repeat 5 129 0 240 35 0 0 chr3 200513892 200513921 -17523237 + (GA)n Simple_repeat Simple_repeat 2 30 0 449 210 161 0 chr3 200514114 200514238 -17522920 - MER58C DNA MER1_type -14 201 58 216 267 93 13 chr3 200514251 200514326 -17522832 + MER5A DNA MER1_type 17 97 -92 2189 101 0 10 chr3 200514751 200515047 -17522111 - AluSx SINE Alu -19 293 1 232 274 18 44 chr3 200515210 200515342 -17521816 - MER5B DNA MER1_type -25 164 29 2020 93 67 4 chr3 200516210 200516480 -17520678 + AluSx SINE Alu 14 300 -12 1206 48 15 29 chr3 200517272 200517478 -17519680 + SVA Other Other 664 866 -520 986 122 17 93 chr3 200517506 200517923 -17519235 + SVA Other Other 480 864 -522 604 248 5 24 chr3 200517941 200518147 -17519011 + SVA Other Other 665 866 -520 353 307 155 14 chr3 200718529 200718894 -17318264 + L1ME LINE L1 582 1025 -5045 268 238 74 79 chr3 200718982 200719027 -17318131 + L1ME LINE L1 1126 1170 -5091 1813 148 16 23 chr3 200719027 200719331 -17317827 + AluJo SINE Alu 3 304 -8 268 238 74 79 chr3 200719331 200719487 -17317671 + L1ME LINE L1 1170 1326 -4935 1155 276 34 11 chr3 200719601 200720040 -17317118 - L1M4 LINE L1 -1141 5005 4557 24 0 0 0 chr3 200720582 200720606 -17316552 + AT_rich Low_complexity Low_complexity 1 24 0 427 277 256 0 chr3 200720920 200721057 -17316101 - MER5A DNA MER1_type -9 180 9 282 340 81 4 chr3 200721085 200721320 -17315838 - L1M4 LINE L1 -3376 2770 2518 2109 114 17 3 chr3 200721322 200721619 -17315539 - AluSx SINE Alu -7 305 5 796 191 7 0 chr3 200721943 200722090 -17315068 + MER3 DNA MER1_type 1 148 -61 230 95 24 0 chr3 200722090 200722132 -17315026 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 197 222 44 0 chr3 200722261 200722306 -17314852 - L2 LINE L2 -89 3224 3178 24 0 0 0 chr3 200722365 200722389 -17314769 + AT_rich Low_complexity Low_complexity 1 24 0 1845 147 76 17 chr3 200722736 200723090 -17314068 - THE1C LTR MaLR 0 375 1 1315 108 5 5 chr3 200723090 200723293 -17313865 - THE1C-int LTR MaLR 0 1580 1378 394 133 0 0 chr3 200723300 200723360 -17313798 - THE1C-int LTR MaLR -461 1119 1060 2139 115 0 20 chr3 200724704 200725008 -17312150 + AluSg SINE Alu 1 298 -12 1122 140 10 5 chr3 200725013 200725220 -17311938 + L1MB7 LINE L1 5690 5897 -287 2339 96 3 3 chr3 200725228 200725531 -17311627 + AluSx SINE Alu 1 303 -9 458 250 12 76 chr3 200725531 200725703 -17311455 + MIR SINE MIR 40 200 -62 197 315 0 0 chr3 200726089 200726143 -17311015 + L2 LINE L2 2910 2963 -309 2609 50 0 0 chr3 200726175 200726476 -17310682 - AluY SINE Alu -10 301 1 1918 143 87 0 chr3 200726478 200726765 -17310393 - AluJb SINE Alu 0 312 1 390 123 0 0 chr3 200726783 200726848 -17310310 - L1MA2 LINE L1 0 6304 6240 730 139 0 0 chr3 200726848 200726949 -17310209 - AluJ/FLAM SINE Alu -210 102 2 2407 81 3 0 chr3 200726950 200727246 -17309912 - AluSp SINE Alu -12 301 5 427 252 0 46 chr3 200727248 200727379 -17309779 + L1M3 LINE L1 4898 5022 -1124 2374 122 0 0 chr3 200727518 200727829 -17309329 + AluSx SINE Alu 1 311 -1 426 194 0 1 chr3 200727829 200727908 -17309250 + L1M3 LINE L1 5495 5574 -597 1122 129 6 39 chr3 200727921 200728078 -17309080 + FRAM SINE Alu 1 152 -160 2309 118 0 3 chr3 200728078 200728391 -17308767 + AluSx SINE Alu 1 312 0 1122 129 6 39 chr3 200728391 200728411 -17308747 + FRAM SINE Alu 152 171 -5 715 169 108 0 chr3 200728411 200728559 -17308599 + L1M3 LINE L1 5578 5741 -442 658 103 0 0 chr3 200728660 200728747 -17308411 - AluS SINE Alu -225 88 2 465 82 14 0 chr3 200728749 200728822 -17308336 - L1MA4 LINE L1 -124 6176 6103 751 168 0 0 chr3 200728823 200728936 -17308222 + FLAM_C SINE Alu 2 114 -29 527 128 75 0 chr3 200729577 200729671 -17307487 - AluSg/x SINE Alu 0 312 212 1747 97 0 0 chr3 200729771 200729988 -17307170 - AluSq SINE Alu -96 217 1 1327 226 68 6 chr3 200730012 200730349 -17306809 - MLT1C LTR MaLR 0 467 110 961 132 0 7 chr3 200730349 200730493 -17306665 - FLAM_C SINE Alu 0 143 1 342 137 0 0 chr3 200730499 200730576 -17306582 - Alu SINE Alu 0 310 234 915 86 0 0 chr3 200730581 200730698 -17306460 - AluSq/x SINE Alu -186 127 11 369 123 0 0 chr3 200730711 200730768 -17306390 - MLT1C LTR MaLR -346 121 65 1947 134 10 14 chr3 200730768 200731058 -17306100 - AluSc SINE Alu -20 289 1 635 245 40 20 chr3 200731076 200731276 -17305882 + L1MC4 LINE L1 7702 7905 -137 1118 90 0 0 chr3 200731308 200731452 -17305706 + AluYa5 SINE Alu 164 307 -4 602 238 0 0 chr3 200731494 200731595 -17305563 - FRAM SINE Alu -75 101 1 1654 162 34 0 chr3 200731623 200731889 -17305269 + AluSx SINE Alu 1 275 -37 180 281 70 0 chr3 200734143 200734200 -17302958 + MER5A DNA MER1_type 63 123 -66 411 149 0 0 chr3 200736930 200737004 -17300154 + (TTCC)n Simple_repeat Simple_repeat 1 74 0 2302 110 3 0 chr3 200737004 200737304 -17299854 - AluSp SINE Alu -10 303 3 2002 197 16 35 chr3 200737306 200737708 -17299450 - L1M4 LINE L1 -1008 5138 4745 2269 113 0 0 chr3 200737708 200738001 -17299157 - AluSx SINE Alu -19 293 1 2002 197 16 35 chr3 200738001 200738090 -17299068 - L1M4 LINE L1 -1401 4745 4656 2343 115 0 3 chr3 200738545 200738858 -17298300 - AluSx SINE Alu 0 312 1 2234 105 0 10 chr3 200739047 200739351 -17297807 - AluSx SINE Alu -11 301 1 318 270 79 11 chr3 200739926 200740015 -17297143 - L1M4c LINE L1 -5027 1357 1263 220 228 18 0 chr3 200740825 200740882 -17296276 + CT-rich Low_complexity Low_complexity 1 58 0 1598 158 6 81 chr3 200741516 200741851 -17295307 + AluSx SINE Alu 1 310 -2 1591 186 42 57 chr3 200742069 200742494 -17294664 - L1M4 LINE L1 -1482 4664 4246 1762 146 68 34 chr3 200742597 200742920 -17294238 + MER1B DNA MER1_type 1 334 -3 603 244 43 24 chr3 200742932 200743096 -17294062 - MER46C DNA MER2_type -91 247 81 2190 132 0 0 chr3 200743109 200743419 -17293739 - AluSx SINE Alu -2 310 1 21 0 0 0 chr3 200743858 200743879 -17293279 + AT_rich Low_complexity Low_complexity 1 21 0 284 255 100 60 chr3 200743929 200744012 -17293146 - L1MC4a LINE L1 -1879 5929 5851 2271 112 0 3 chr3 200744012 200744317 -17292841 - AluSg SINE Alu -6 304 1 284 255 100 60 chr3 200744317 200744433 -17292725 - L1MC4a LINE L1 -1957 5851 5722 21 36 0 0 chr3 200744646 200744674 -17292484 + AT_rich Low_complexity Low_complexity 1 28 0 519 137 42 0 chr3 200744674 200744769 -17292389 + L1MB3 LINE L1 6083 6181 -2 1750 138 31 69 chr3 200744778 200745085 -17292073 + AluJb SINE Alu 1 297 -15 189 0 0 0 chr3 200745085 200745106 -17292052 + (TA)n Simple_repeat Simple_repeat 2 22 0 1750 138 31 69 chr3 200745106 200745118 -17292040 + AluJb SINE Alu 297 308 -4 590 210 7 7 chr3 200745268 200745406 -17291752 + L1MB3 LINE L1 6014 6151 -32 554 202 61 9 chr3 200745565 200745679 -17291479 - L2 LINE L2 -2 3311 3192 1385 159 32 0 chr3 200745735 200745955 -17291203 + AluJo SINE Alu 84 310 -2 2239 136 0 3 chr3 200745963 200746272 -17290886 + AluSx SINE Alu 1 308 -4 1042 193 42 129 chr3 200746291 200746763 -17290395 + L1MC/D LINE L1 5374 5804 -2004 874 252 87 4 chr3 200746848 200747078 -17290080 - MIR SINE MIR -3 259 11 258 250 12 25 chr3 200747094 200747174 -17289984 + (TATG)n Simple_repeat Simple_repeat 2 80 0 309 26 0 0 chr3 200747592 200747630 -17289528 + (TG)n Simple_repeat Simple_repeat 2 39 0 181 285 58 58 chr3 200747633 200747770 -17289388 - L3b LINE CR1 -242 1341 1205 326 247 39 14 chr3 200748335 200748437 -17288721 + MIR SINE MIR 10 118 -90 311 225 56 0 chr3 200750803 200750874 -17286284 + L2 LINE L2 3189 3263 -9 2302 123 7 0 chr3 200752039 200752349 -17284809 - AluSx SINE Alu 0 312 1 1851 153 24 3 chr3 200752352 200752646 -17284512 - AluJb SINE Alu -2 310 11 2134 117 0 3 chr3 200752648 200752964 -17284194 - AluSx SINE Alu 0 312 2 2494 93 3 0 chr3 200752965 200753276 -17283882 - AluSp SINE Alu -1 312 1 236 305 142 28 chr3 200753505 200753646 -17283512 - MIR3 SINE MIR -31 177 21 2051 146 3 0 chr3 200753762 200754056 -17283102 + AluJo SINE Alu 1 295 -17 492 200 262 0 chr3 200758357 200758502 -17278656 - MIR SINE MIR -20 242 60 1984 111 36 4 chr3 200758633 200758913 -17278245 + AluSx SINE Alu 1 289 -23 2283 95 7 0 chr3 200759073 200759357 -17277801 + AluSq SINE Alu 6 291 -22 558 298 68 61 chr3 200759726 200759827 -17277331 + HAL1 LINE L1 4 103 -2404 2311 102 0 10 chr3 200759827 200759960 -17277198 + AluSq SINE Alu 1 134 -179 2362 104 0 3 chr3 200759960 200760269 -17276889 + AluSq SINE Alu 1 308 -5 2311 102 0 10 chr3 200760269 200760439 -17276719 + AluSq SINE Alu 134 301 -12 558 298 68 61 chr3 200760439 200760794 -17276364 + HAL1 LINE L1 103 463 -2044 314 287 65 0 chr3 200760793 200760901 -17276257 + HAL1 LINE L1 1261 1375 -1132 * 682 244 65 68 chr3 200761113 200761495 -17275663 + HAL1 LINE L1 700 1080 -1427 1925 146 14 7 chr3 200761702 200761997 -17275161 + AluJo SINE Alu 1 297 -15 820 142 7 35 chr3 200761997 200762138 -17275020 + AluJb SINE Alu 1 137 -175 1041 128 6 32 chr3 200762989 200763001 -17274157 + AluSg/x SINE Alu 125 136 -176 2423 97 0 3 chr3 200763001 200763309 -17273849 + AluSx SINE Alu 1 307 -5 1041 128 6 32 chr3 200763309 200763452 -17273706 + AluSg/x SINE Alu 136 276 -36 777 175 141 19 chr3 200763575 200763781 -17273377 + AluY SINE Alu 74 304 -7 692 306 143 23 chr3 200764119 200764381 -17272777 + L2 LINE L2 2787 3016 -297 2416 100 0 0 chr3 200764381 200764692 -17272466 - AluSx SINE Alu -1 311 1 692 306 143 23 chr3 200764692 200764890 -17272268 + L2 LINE L2 3016 3312 -1 2179 68 0 54 chr3 200765015 200765310 -17271848 - AluSp SINE Alu -32 281 3 242 233 12 23 chr3 200765758 200765844 -17271314 + (CGGGG)n Simple_repeat Simple_repeat 5 89 0 29 0 0 0 chr3 200765894 200765923 -17271235 + GC_rich Low_complexity Low_complexity 1 29 0 37 76 0 0 chr3 200765994 200766073 -17271085 + GC_rich Low_complexity Low_complexity 1 79 0 867 221 26 52 chr3 200768386 200768502 -17268656 - MIR SINE MIR -24 238 129 1857 173 10 3 chr3 200768502 200768802 -17268356 + AluJo SINE Alu 2 303 -9 867 221 26 52 chr3 200768802 200768916 -17268242 - MIR SINE MIR -133 129 14 191 152 0 0 chr3 200768923 200768956 -17268202 - MIR SINE MIR -101 161 129 2394 89 10 3 chr3 200769219 200769523 -17267635 - AluSx SINE Alu -4 308 3 257 74 0 37 chr3 200769758 200769812 -17267346 + (TTTTA)n Simple_repeat Simple_repeat 5 180 0 2259 63 3 43 chr3 200769812 200770112 -17267046 - AluY SINE Alu -24 287 1 290 330 27 9 chr3 200770273 200770385 -17266773 - MIR SINE MIR -115 147 34 180 0 0 0 chr3 200770397 200770417 -17266741 + (TG)n Simple_repeat Simple_repeat 2 21 0 2304 95 0 0 chr3 200771008 200771313 -17265845 + AluSx SINE Alu 1 305 -7 581 284 89 6 chr3 200771637 200771806 -17265352 + MIR SINE MIR 4 186 -76 407 240 230 34 chr3 200771832 200772036 -17265122 + MIR SINE MIR 7 250 -12 1927 120 0 27 chr3 200772043 200772335 -17264823 - AluJo SINE Alu -13 299 16 1135 109 0 0 chr3 200772414 200772570 -17264588 - AluSx SINE Alu 0 312 157 195 297 47 16 chr3 200772571 200772635 -17264523 - MIR SINE MIR -127 81 16 1142 123 47 6 chr3 200772883 200773054 -17264104 - AluSx SINE Alu -134 178 1 292 304 232 5 chr3 200775381 200775601 -17261557 - L2 LINE L2 -24 3289 3020 448 279 117 25 chr3 200775687 200775904 -17261254 + MIR SINE MIR 16 256 -6 347 350 58 0 chr3 200777053 200777190 -17259968 + MIR SINE MIR 115 259 -3 395 283 50 50 chr3 200777235 200777433 -17259725 - MIR SINE MIR -56 206 9 1693 136 46 21 chr3 200779278 200779558 -17257600 + AluSx SINE Alu 1 287 -25 1956 135 26 13 chr3 200782317 200782621 -17254537 + AluSx SINE Alu 1 308 -4 421 341 125 24 chr3 200782719 200783224 -17253934 + L2 LINE L2 2015 2570 -744 1009 191 43 30 chr3 200783235 200783465 -17253693 + MIR SINE MIR 22 254 -8 236 30 30 0 chr3 200783466 200783499 -17253659 + (TTA)n Simple_repeat Simple_repeat 2 35 0 333 0 0 0 chr3 200784451 200784488 -17252670 + (A)n Simple_repeat Simple_repeat 1 37 0 29 47 0 0 chr3 200784681 200784724 -17252434 + GC_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr3 200784982 200785005 -17252153 + GC_rich Low_complexity Low_complexity 1 23 0 2011 133 7 7 chr3 200789523 200789832 -17247326 - AluJo SINE Alu -3 309 1 366 257 55 15 chr3 200792759 200792872 -17244286 - MIR3 SINE MIR -6 202 84 484 184 10 39 chr3 200794230 200794333 -17242825 - AluJo SINE Alu -93 219 120 2207 95 10 0 chr3 200794501 200794805 -17242353 + AluSp SINE Alu 1 307 -6 305 169 17 0 chr3 200794805 200794864 -17242294 - L1MC5 LINE L1 -83 7878 7819 319 144 78 0 chr3 200795012 200795102 -17242056 - L1MC5 LINE L1 -521 7440 7344 311 276 82 91 chr3 200796950 200797089 -17240069 + MIR SINE MIR 16 154 -108 270 0 0 0 chr3 200797089 200797119 -17240039 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 311 276 82 91 chr3 200797119 200797222 -17239936 + MIR SINE MIR 154 256 -6 2872 170 22 14 chr3 200799978 200800572 -17236586 - L1MB7 LINE L1 -195 5989 5391 236 297 320 0 chr3 200801421 200801549 -17235609 + MIR SINE MIR 21 189 -73 2032 138 10 3 chr3 200801610 200801914 -17235244 - AluSx SINE Alu -6 306 1 2271 111 34 60 chr3 200802022 200802435 -17234723 - L1MA5 LINE L1 -6 6294 5893 794 196 0 0 chr3 200804563 200804696 -17232462 + FLAM_A SINE Alu 1 133 0 2209 107 3 0 chr3 200804785 200805085 -17232073 + AluSx SINE Alu 1 301 -11 249 354 0 12 chr3 200805869 200805951 -17231207 + L3 LINE CR1 1490 1570 -7 546 308 130 0 chr3 200806560 200806836 -17230322 - LTR16A LTR ERVL 0 450 139 2293 100 0 0 chr3 200806838 200807138 -17230020 - AluSx SINE Alu -12 300 1 1374 184 123 4 chr3 200807149 200807410 -17229748 - AluJo SINE Alu -10 292 1 507 303 179 0 chr3 200807479 200807674 -17229484 - MIR SINE MIR -2 260 31 1030 121 10 61 chr3 200807680 200807710 -17229448 - AluSg/x SINE Alu 0 312 282 462 18 0 0 chr3 200807710 200807765 -17229393 + (TG)n Simple_repeat Simple_repeat 2 56 0 1030 121 10 61 chr3 200807765 200807932 -17229226 - AluSg/x SINE Alu -30 282 125 2477 60 0 0 chr3 200807945 200808245 -17228913 - AluY SINE Alu -11 300 1 2300 108 0 0 chr3 200808248 200808554 -17228604 - AluSx SINE Alu -6 306 1 183 304 0 18 chr3 200808711 200808767 -17228391 + MIR SINE MIR 205 259 -3 1962 153 0 0 chr3 200808781 200809076 -17228082 + AluJb SINE Alu 1 295 -17 230 290 124 41 chr3 200809096 200809241 -17227917 + MIR SINE MIR 36 192 -70 2258 110 0 3 chr3 200809493 200809801 -17227357 + AluSx SINE Alu 1 307 -5 4616 175 8 48 chr3 200809806 200810731 -17226427 - L1MC3 LINE L1 -1332 6453 5575 2218 93 7 0 chr3 200810731 200811031 -17226127 + AluSx SINE Alu 1 302 -10 4616 175 8 48 chr3 200811031 200811176 -17225982 - L1MC3 LINE L1 -2210 5575 5426 796 282 40 16 chr3 200811359 200811607 -17225551 + MIR SINE MIR 2 255 -7 2246 106 3 0 chr3 200811647 200811974 -17225184 - AluSx SINE Alu 0 312 1 1694 167 3 36 chr3 200811976 200812282 -17224876 - AluJo SINE Alu -16 296 1 2172 100 3 7 chr3 200812286 200812586 -17224572 - AluSp SINE Alu 0 313 15 1971 135 14 0 chr3 200812927 200813224 -17223934 + AluSx SINE Alu 1 301 -11 315 23 0 0 chr3 200813261 200813304 -17223854 + L1MB4 LINE L1 6138 6180 0 227 81 0 0 chr3 200813306 200813343 -17223815 + L1ME1 LINE L1 6126 6162 -4 626 197 0 14 chr3 200813367 200813514 -17223644 + L1MC4 LINE L1 7213 7357 -685 345 197 14 0 chr3 200813548 200813619 -17223539 + MLT2D LTR ERVL 91 162 -252 267 104 3 40 chr3 200813619 200813680 -17223478 - MLT2B3 LTR ERVL 0 554 394 306 0 0 0 chr3 200813681 200813715 -17223443 + (TGGA)n Simple_repeat Simple_repeat 1 34 0 2292 156 42 31 chr3 200813715 200814197 -17222961 - MLT2B3 LTR ERVL -21 533 47 1975 123 42 0 chr3 200814229 200814513 -17222645 - AluSx SINE Alu -16 296 1 638 220 124 36 chr3 200814557 200814768 -17222390 + MLT2D LTR ERVL 136 374 -40 270 0 0 0 chr3 200814768 200814798 -17222360 + (TC)n Simple_repeat Simple_repeat 1 30 0 638 220 124 36 chr3 200814798 200814836 -17222322 + MLT2D LTR ERVL 374 407 -7 1049 210 46 4 chr3 200814836 200815098 -17222060 + L1MC4 LINE L1 7350 7622 -420 2116 123 3 19 chr3 200815104 200815421 -17221737 + AluSx SINE Alu 1 312 0 1138 206 6 118 chr3 200815426 200815573 -17221585 + AluJb SINE Alu 2 91 -211 225 65 0 0 chr3 200815573 200815604 -17221554 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1138 206 6 118 chr3 200815604 200815795 -17221363 + AluJb SINE Alu 91 302 0 280 221 0 0 chr3 200815795 200815872 -17221286 + L1MC4 LINE L1 7824 7900 -142 307 273 131 20 chr3 200815953 200816052 -17221106 + L2 LINE L2 3204 3313 0 795 167 0 77 chr3 200816348 200816504 -17220654 - AluJo SINE Alu -160 152 9 2023 113 0 17 chr3 200816662 200816955 -17220203 + AluSx SINE Alu 1 288 -24 200 125 0 25 chr3 200816955 200816995 -17220163 + (TA)n Simple_repeat Simple_repeat 1 39 0 30 0 0 0 chr3 200819689 200819719 -17217439 + GC_rich Low_complexity Low_complexity 1 30 0 27 49 0 0 chr3 200820223 200820264 -17216894 + GC_rich Low_complexity Low_complexity 1 41 0 218 237 87 97 chr3 200820976 200821183 -17215975 + L2 LINE L2 2950 3154 -118 395 270 98 35 chr3 200821761 200821935 -17215223 - MIR SINE MIR -44 218 34 21 36 0 0 chr3 200822900 200822928 -17214230 + GC_rich Low_complexity Low_complexity 1 28 0 213 211 19 0 chr3 200826975 200827027 -17210131 + (GGGTG)n Simple_repeat Simple_repeat 5 57 0 402 244 116 58 chr3 200827373 200827545 -17209613 + MIR SINE MIR 54 235 -27 190 229 0 115 chr3 200828446 200828507 -17208651 - L2 LINE L2 0 3272 3219 563 203 0 17 chr3 200829927 200830045 -17207113 - MER3 DNA MER1_type -62 147 32 303 208 42 62 chr3 200832604 200832700 -17204458 + MIR SINE MIR 61 154 -108 * 550 226 55 65 chr3 200832688 200832907 -17204251 + MIR SINE MIR 20 235 -27 800 156 0 22 chr3 200833819 200833954 -17203204 + FLAM_C SINE Alu 2 133 0 250 274 83 0 chr3 200833958 200834042 -17203116 - MIR3 SINE MIR -31 177 87 786 321 89 34 chr3 200835485 200835955 -17201203 + L2 LINE L2 2278 2773 -541 300 314 99 12 chr3 200835924 200836096 -17201062 - MIR SINE MIR -70 192 6 * 377 320 78 78 chr3 200836098 200836232 -17200926 + L2 LINE L2 2782 2915 -357 2082 98 6 50 chr3 200836232 200836457 -17200701 - AluSx SINE Alu -9 303 94 1982 142 3 0 chr3 200836457 200836760 -17200398 - AluSx SINE Alu -8 304 1 2082 98 6 50 chr3 200836760 200836851 -17200307 - AluSx SINE Alu -218 94 1 2245 92 3 0 chr3 200836859 200837154 -17200004 - AluSx SINE Alu -16 296 1 377 320 78 78 chr3 200837154 200837401 -17199757 + L2 LINE L2 2922 3173 -99 2450 32 0 29 chr3 200837401 200837709 -17199449 - AluY SINE Alu -11 300 2 377 320 78 78 chr3 200837709 200837804 -17199354 + L2 LINE L2 3173 3267 -5 213 390 92 0 chr3 200838569 200838733 -17198425 + L2 LINE L2 3044 3222 -50 204 325 72 0 chr3 200839742 200839825 -17197333 + MIR SINE MIR 40 128 -80 2390 80 0 3 chr3 200840358 200840669 -17196489 + AluSp SINE Alu 1 310 -3 1694 165 3 16 chr3 200840691 200840815 -17196343 + AluJo SINE Alu 13 137 -175 2129 119 0 0 chr3 200840815 200841109 -17196049 + AluSx SINE Alu 9 302 -10 1694 165 3 16 chr3 200841109 200841287 -17195871 + AluJo SINE Alu 137 311 -1 450 288 98 5 chr3 200841301 200841485 -17195673 + MIR SINE MIR 28 228 -34 362 252 151 29 chr3 200841613 200841752 -17195406 - MER5A DNA MER1_type -6 183 28 242 321 86 0 chr3 200841968 200842049 -17195109 - MIR SINE MIR -18 244 157 810 237 0 53 chr3 200842078 200842217 -17194941 - MER58A DNA MER1_type -2197 223 97 2249 93 0 13 chr3 200842217 200842528 -17194630 + AluSx SINE Alu 1 307 -5 810 237 0 53 chr3 200842528 200842595 -17194563 - MER58A DNA MER1_type -2323 97 28 551 226 45 32 chr3 200842610 200842765 -17194393 - LTR16A1 LTR ERVL 0 457 301 690 236 83 55 chr3 200843072 200843225 -17193933 + MIR SINE MIR 2 166 -96 2289 96 0 0 chr3 200843225 200843526 -17193632 - AluSx SINE Alu -11 301 1 690 236 83 55 chr3 200843526 200843626 -17193532 + MIR SINE MIR 166 262 0 641 139 9 19 chr3 200843831 200843939 -17193219 - FRAM SINE Alu -14 162 56 1669 71 123 34 chr3 200843982 200844250 -17192908 + AluY SINE Alu 3 294 -17 339 323 87 65 chr3 200845316 200845545 -17191613 + L2 LINE L2 3003 3236 -36 2089 106 40 0 chr3 200845558 200845859 -17191299 + AluSq SINE Alu 1 313 0 320 228 197 52 chr3 200846073 200846211 -17190947 - MIR SINE MIR -62 146 4 2281 88 7 0 chr3 200846220 200846525 -17190633 - AluSp SINE Alu -6 307 1 1266 116 0 0 chr3 200846605 200846786 -17190372 + AluSg/x SINE Alu 123 303 -9 363 270 69 20 chr3 200846802 200846904 -17190254 - MIR SINE MIR -102 106 2 425 192 0 58 chr3 200847440 200847459 -17189699 - MER7A DNA MER2_type -2942 96 77 1931 129 7 0 chr3 200847459 200847746 -17189412 - AluSx SINE Alu -23 289 1 425 192 0 58 chr3 200847746 200847830 -17189328 - MER7A DNA MER2_type -2961 77 1 612 191 243 6 chr3 200847922 200848095 -17189063 - MIR SINE MIR -14 248 35 448 309 41 31 chr3 200848193 200848387 -17188771 + MIR SINE MIR 13 208 -54 231 36 0 0 chr3 200848495 200848523 -17188635 + (TCCCC)n Simple_repeat Simple_repeat 5 32 0 282 56 0 0 chr3 200848523 200848559 -17188599 + (TTCC)n Simple_repeat Simple_repeat 1 36 0 1402 164 75 0 chr3 200848561 200848829 -17188329 - AluJo SINE Alu -24 288 1 241 228 22 43 chr3 200848900 200848992 -17188166 + CT-rich Low_complexity Low_complexity 3 92 0 2090 115 3 0 chr3 200849187 200849482 -17187676 + AluSx SINE Alu 1 296 -16 575 220 107 0 chr3 200849491 200849650 -17187508 + L1ME LINE L1 5490 5665 -456 358 261 46 55 chr3 200849668 200849941 -17187217 - MLT1H LTR MaLR -2 565 212 2489 50 0 0 chr3 200849957 200850254 -17186904 - AluY SINE Alu -14 297 1 2222 88 3 0 chr3 200850262 200850556 -17186602 - AluSp SINE Alu -18 295 1 662 149 193 0 chr3 200850558 200850672 -17186486 - AluJo SINE Alu -171 141 6 1500 207 126 32 chr3 200850675 200850829 -17186329 - L1MC4 LINE L1 -1095 6947 6809 1841 109 66 4 chr3 200850829 200851103 -17186055 + AluSg SINE Alu 1 291 -19 1500 207 126 32 chr3 200851103 200851383 -17185775 - L1MC4 LINE L1 -1233 6809 6472 204 125 0 0 chr3 200852041 200852073 -17185085 + (GGGA)n Simple_repeat Simple_repeat 3 34 0 858 128 0 35 chr3 200852459 200852600 -17184558 - FLAM_C SINE Alu -2 141 6 237 83 0 0 chr3 200852725 200852761 -17184397 + (GA)n Simple_repeat Simple_repeat 1 36 0 2101 135 0 0 chr3 200852900 200853203 -17183955 - AluSx SINE Alu -9 303 1 530 110 0 0 chr3 200853233 200853306 -17183852 + Alu SINE Alu 224 296 -13 753 175 0 8 chr3 200853321 200853441 -17183717 - FLAM_C SINE Alu -23 120 2 2232 119 7 0 chr3 200853445 200853796 -17183362 - AluSx SINE Alu 0 353 1 513 267 52 31 chr3 200854093 200854205 -17182953 + MIR SINE MIR 31 150 -112 1875 149 0 7 chr3 200854205 200854500 -17182658 + AluJb SINE Alu 1 293 -19 513 267 52 31 chr3 200854500 200854578 -17182580 + MIR SINE MIR 150 225 -37 1045 101 0 0 chr3 200855062 200855210 -17181948 - AluY SINE Alu -8 303 156 1653 169 14 7 chr3 200855319 200855614 -17181544 + AluJo SINE Alu 1 297 -15 811 143 7 36 chr3 200855615 200855755 -17181403 + AluJb SINE Alu 2 137 -175 761 194 50 0 chr3 200855823 200855983 -17181175 + L1MC4 LINE L1 7455 7622 -420 2019 142 3 0 chr3 200855989 200856298 -17180860 + AluSq SINE Alu 1 310 -3 411 234 16 14 chr3 200856298 200856443 -17180715 + L1MC4 LINE L1 1995 6983 -1339 409 286 0 11 chr3 200856419 200856510 -17180648 + L1MC4 LINE L1 6894 6983 -1339 * 385 319 0 0 chr3 200856435 200856526 -17180632 - L1MC4 LINE L1 -1338 6704 6614 * 349 181 12 0 chr3 200856535 200856618 -17180540 + L1MC4 LINE L1 7283 7366 -956 1458 236 99 8 chr3 200856620 200857005 -17180153 + L1MC4 LINE L1 7517 7936 -386 1350 209 20 17 chr3 200857014 200857311 -17179847 - AluJo SINE Alu -14 298 1 705 133 0 0 chr3 200857316 200857414 -17179744 - AluSx SINE Alu -15 297 200 971 91 0 49 chr3 200857414 200857557 -17179601 - AluSx SINE Alu -159 153 18 297 0 0 0 chr3 200857576 200857609 -17179549 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2107 92 0 0 chr3 200857611 200857883 -17179275 - AluSc SINE Alu -37 272 1 650 245 40 20 chr3 200857901 200858101 -17179057 + L1MC4 LINE L1 7982 8185 -137 1059 90 0 0 chr3 200858133 200858277 -17178881 + AluYa5 SINE Alu 164 307 -4 600 228 0 0 chr3 200858319 200858420 -17178738 - FRAM SINE Alu -75 101 1 1741 132 34 0 chr3 200858448 200858714 -17178444 + AluSx SINE Alu 1 275 -37 220 26 26 26 chr3 200858748 200858786 -17178372 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 2088 150 59 3 chr3 200858792 200859166 -17177992 - L1MC4 LINE L1 -364 7678 7284 296 264 92 119 chr3 200859152 200859546 -17177612 - L1M4 LINE L1 -965 5181 4778 * 1932 130 7 13 chr3 200859546 200859846 -17177312 - AluSx SINE Alu -12 300 3 296 264 92 119 chr3 200859846 200859906 -17177252 - L1M4 LINE L1 -1368 4778 4718 2172 103 0 31 chr3 200859906 200860227 -17176931 - AluSx SINE Alu -1 311 1 296 264 92 119 chr3 200860227 200860536 -17176622 - L1M4 LINE L1 -1428 4718 4442 1933 114 28 7 chr3 200860536 200860825 -17176333 - AluSx SINE Alu -17 295 1 296 264 92 119 chr3 200860825 200860944 -17176214 - L1M4 LINE L1 -1704 4442 4321 2068 130 0 0 chr3 200860944 200861244 -17175914 + AluSx SINE Alu 1 300 -12 1424 202 25 17 chr3 200861253 200861610 -17175548 - L1MC3 LINE L1 -1328 6457 6098 1108 177 9 26 chr3 200861737 200861963 -17175195 - AluY SINE Alu -7 304 83 748 205 83 19 chr3 200862023 200862179 -17174979 + FRAM SINE Alu 1 166 0 922 251 103 52 chr3 200862189 200862321 -17174837 + HAL1 LINE L1 1754 1878 -629 2229 91 7 0 chr3 200862321 200862619 -17174539 + AluSx SINE Alu 3 302 -10 922 251 103 52 chr3 200862619 200862829 -17174329 + HAL1 LINE L1 1878 2076 -431 2096 102 10 13 chr3 200862829 200863133 -17174025 + AluSc SINE Alu 7 309 0 922 251 103 52 chr3 200863133 200863332 -17173826 + HAL1 LINE L1 2076 2324 -183 2337 81 3 7 chr3 200863453 200863762 -17173396 + AluY SINE Alu 1 308 -3 562 169 128 27 chr3 200863764 200863912 -17173246 + AluY SINE Alu 3 165 -146 1918 122 0 7 chr3 200864051 200864157 -17173001 + AluSg SINE Alu 28 133 -177 2280 97 3 0 chr3 200864157 200864465 -17172693 + AluSc SINE Alu 1 309 0 1918 122 0 7 chr3 200864465 200864636 -17172522 + AluSg SINE Alu 133 303 -7 210 91 0 0 chr3 200864686 200864719 -17172439 + (TC)n Simple_repeat Simple_repeat 1 33 0 1438 179 19 32 chr3 200864719 200865031 -17172127 - AluSx SINE Alu -1 311 4 644 182 38 63 chr3 200865166 200865325 -17171833 - AluSq SINE Alu -74 239 85 636 232 94 0 chr3 200865382 200865520 -17171638 + FRAM SINE Alu 1 148 -28 322 275 84 0 chr3 200865552 200865683 -17171475 + HAL1 LINE L1 1755 1896 -611 1877 134 7 3 chr3 200865683 200865982 -17171176 + AluSx SINE Alu 3 302 -10 338 257 68 30 chr3 200865998 200866101 -17171057 - MIR SINE MIR -102 106 2 208 196 39 0 chr3 200868560 200868611 -17168547 + (CGGGG)n Simple_repeat Simple_repeat 1 53 0 43 99 0 0 chr3 200868768 200868909 -17168249 + GC_rich Low_complexity Low_complexity 1 141 0 223 98 0 82 chr3 200870033 200870094 -17167064 + (CGGGG)n Simple_repeat Simple_repeat 3 58 0 310 113 14 14 chr3 200870224 200870295 -17166863 + (CGGGGG)n Simple_repeat Simple_repeat 5 75 0 320 191 21 101 chr3 200870878 200871066 -17166092 + (TCTCTG)n Simple_repeat Simple_repeat 3 175 0 1742 156 9 25 chr3 200872094 200872387 -17164771 + AluSx SINE Alu 1 290 -22 462 36 0 0 chr3 200872387 200872443 -17164715 + (GA)n Simple_repeat Simple_repeat 2 57 0 1742 156 9 25 chr3 200872443 200872464 -17164694 + AluSx SINE Alu 290 310 -2 282 56 0 0 chr3 200872669 200872705 -17164453 + (TTCC)n Simple_repeat Simple_repeat 1 36 0 1402 164 75 0 chr3 200872707 200872975 -17164183 - AluJo SINE Alu -24 288 1 241 228 22 43 chr3 200873046 200873138 -17164020 + CT-rich Low_complexity Low_complexity 3 92 0 2090 115 3 0 chr3 200873333 200873628 -17163530 + AluSx SINE Alu 1 296 -16 575 220 107 0 chr3 200873637 200873796 -17163362 + L1ME4a LINE L1 5490 5665 -456 556 242 57 108 chr3 200873814 200874103 -17163055 - MLT1H LTR MaLR -2 565 263 2489 50 0 0 chr3 200874103 200874400 -17162758 - AluY SINE Alu -14 297 1 2026 100 21 0 chr3 200874408 200874697 -17162461 - AluSp SINE Alu -18 295 1 556 242 57 108 chr3 200874697 200874855 -17162303 - MLT1H LTR MaLR -311 256 1 471 266 60 45 chr3 200874857 200875056 -17162102 + L1ME4a LINE L1 5696 5897 -224 1263 142 19 19 chr3 200875113 200875318 -17161840 + AluJo SINE Alu 2 206 -106 1192 110 93 0 chr3 200875430 200875612 -17161546 + AluSg/x SINE Alu 105 303 -9 247 311 23 3 chr3 200875646 200875750 -17161408 - MIR SINE MIR -63 145 38 812 151 16 0 chr3 200875904 200876030 -17161128 - FLAM_A SINE Alu -1 132 5 192 182 0 0 chr3 200876102 200876146 -17161012 + (TGAA)n Simple_repeat Simple_repeat 4 47 0 212 240 0 20 chr3 200876148 200876198 -17160960 + L2 LINE L2 3212 3260 -12 247 286 0 0 chr3 200876685 200876748 -17160410 + L2 LINE L2 3251 3313 0 213 172 17 35 chr3 200879075 200879133 -17158025 + (CCCCAG)n Simple_repeat Simple_repeat 2 58 0 194 231 0 19 chr3 200879627 200879679 -17157479 + MIR SINE MIR 92 142 -66 570 256 143 13 chr3 200879691 200879921 -17157237 - MIR SINE MIR -1 261 2 23 0 0 0 chr3 200880616 200880639 -17156519 + AT_rich Low_complexity Low_complexity 1 23 0 2223 95 0 0 chr3 200880648 200880943 -17156215 - AluSg SINE Alu -15 295 1 279 268 161 5 chr3 200880954 200881178 -17155980 - L1ME4a LINE L1 -1 6120 5862 276 264 7 68 chr3 200881208 200881356 -17155802 - L1ME4a LINE L1 -339 5782 5644 2260 96 3 10 chr3 200881478 200881791 -17155367 - AluSx SINE Alu 0 312 2 234 286 143 9 chr3 200881935 200882040 -17155118 + MER5B DNA MER1_type 25 143 -35 516 240 62 0 chr3 200882263 200882392 -17154766 + MIR SINE MIR 53 189 -73 466 169 0 0 chr3 200882401 200882472 -17154686 + AluSg/x SINE Alu 179 249 -63 886 190 0 0 chr3 200882479 200882642 -17154516 + AluJb SINE Alu 149 311 -1 1693 162 0 45 chr3 200882746 200883054 -17154104 + AluJb SINE Alu 2 295 -17 374 272 52 38 chr3 200883131 200883344 -17153814 + L1MC5 LINE L1 7311 7526 -435 1019 91 13 0 chr3 200883397 200883551 -17153607 + L1M3 LINE L1 5595 5750 -430 21 36 0 0 chr3 200888366 200888394 -17148764 + GC_rich Low_complexity Low_complexity 1 28 0 2264 82 3 16 chr3 200889158 200889475 -17147683 - AluSp SINE Alu 0 313 1 2008 112 0 38 chr3 200889706 200890019 -17147139 - AluSx SINE Alu -11 301 1 2273 84 0 22 chr3 200890030 200890341 -17146817 - AluSg SINE Alu -6 304 1 293 352 64 34 chr3 200890350 200890648 -17146510 - L2 LINE L2 -19 3294 2988 2184 109 0 6 chr3 200892009 200892320 -17144838 - AluSg SINE Alu -1 309 1 189 0 0 0 chr3 200892837 200892858 -17144300 + (A)n Simple_repeat Simple_repeat 1 21 0 717 292 10 40 chr3 200893476 200893678 -17143480 - MER91A DNA MER1_type 0 196 1 2360 59 3 0 chr3 200893708 200893995 -17143163 - AluSp SINE Alu -21 292 5 240 338 26 0 chr3 200894020 200894097 -17143061 - MIR SINE MIR -104 158 80 23 0 0 0 chr3 200895953 200895976 -17141182 + AT_rich Low_complexity Low_complexity 1 23 0 1660 145 52 14 chr3 200897936 200898225 -17138933 + AluJo SINE Alu 3 302 -10 195 316 226 11 chr3 200898277 200898467 -17138691 - L3b LINE CR1 -208 1375 1145 25 51 0 0 chr3 200898882 200898921 -17138237 + AT_rich Low_complexity Low_complexity 1 39 0 1484 102 0 14 chr3 200898945 200899161 -17137997 + AluSc SINE Alu 87 299 -10 604 205 16 8 chr3 200899161 200899283 -17137875 - FLAM_A SINE Alu -7 126 4 288 330 205 38 chr3 200899561 200900526 -17136632 + L2 LINE L2 1765 2890 -424 309 308 29 10 chr3 200900832 200900936 -17136222 + MIR SINE MIR 118 223 -39 323 236 108 61 chr3 200902121 200902269 -17134889 - L2 LINE L2 -3 3310 3156 2197 96 7 0 chr3 200902288 200902590 -17134568 + AluSx SINE Alu 9 312 0 351 233 153 13 chr3 200902859 200902927 -17134231 + MER104 DNA Tc2 7 64 -1834 2001 98 0 7 chr3 200902927 200903201 -17133957 - AluSx SINE Alu -16 296 25 351 233 153 13 chr3 200903201 200903282 -17133876 + MER104 DNA Tc2 64 177 -3 2137 98 10 0 chr3 200903674 200903969 -17133189 - AluSg SINE Alu -12 298 1 222 266 114 13 chr3 200904004 200904083 -17133075 + L2 LINE L2 3227 3313 0 1982 92 26 42 chr3 200904912 200905218 -17131940 - AluSq SINE Alu -12 301 1 806 228 127 0 chr3 200906920 200907148 -17130010 - MER58 DNA MER1_type -57 284 28 288 0 0 0 chr3 200907150 200907182 -17129976 + (TG)n Simple_repeat Simple_repeat 2 33 0 1986 109 27 17 chr3 200908555 200908849 -17128309 + AluSx SINE Alu 1 297 -15 23 0 0 0 chr3 200910959 200910982 -17126176 + AT_rich Low_complexity Low_complexity 1 23 0 291 122 0 0 chr3 200911315 200911364 -17125794 + (TTC)n Simple_repeat Simple_repeat 1 49 0 489 17 0 0 chr3 200913837 200913895 -17123263 + (CA)n Simple_repeat Simple_repeat 2 59 0 1005 185 0 0 chr3 200914233 200914390 -17122768 - FRAM SINE Alu -5 161 5 1414 105 5 0 chr3 200914417 200914607 -17122551 + AluSx SINE Alu 1 191 -121 447 19 0 0 chr3 200914709 200914761 -17122397 + (GA)n Simple_repeat Simple_repeat 2 53 0 1261 106 0 0 chr3 200914811 200914981 -17122177 - AluSg/x SINE Alu -7 305 136 1661 182 3 0 chr3 200914982 200915290 -17121868 - AluSc SINE Alu 0 309 1 2334 44 10 14 chr3 200915786 200916080 -17121078 - AluY SINE Alu -18 293 1 2348 77 3 0 chr3 200917796 200918096 -17119062 + AluSx SINE Alu 1 301 -11 316 335 35 51 chr3 200918645 200918756 -17118402 + L2 LINE L2 2430 2541 -773 1659 255 65 36 chr3 200918756 200918832 -17118326 - MLT2B1 LTR ERVL 0 520 448 2171 101 0 0 chr3 200918832 200919118 -17118040 - AluSg SINE Alu -24 286 1 1659 255 65 36 chr3 200919118 200919546 -17117612 - MLT2B1 LTR ERVL -72 448 1 316 335 35 51 chr3 200919546 200919688 -17117470 + L2 LINE L2 2541 2679 -635 236 246 0 164 chr3 200919713 200919745 -17117413 - HAL1 LINE L1 -1 2506 2470 2182 112 3 0 chr3 200919745 200920050 -17117108 - AluSx SINE Alu -6 306 1 236 246 0 164 chr3 200920050 200920212 -17116946 - HAL1 LINE L1 -37 2470 2344 1407 303 121 19 chr3 200920248 200920934 -17116224 - HAL1 LINE L1 -1742 765 10 232 377 9 18 chr3 200920934 200921048 -17116110 + L2 LINE L2 2682 2794 -520 804 113 42 22 chr3 200921327 200921792 -17115366 + (TG)n Simple_repeat Simple_repeat 1 474 0 2205 106 0 3 chr3 200922344 200922656 -17114502 - AluSx SINE Alu -1 311 1 470 296 17 40 chr3 200922771 200922947 -17114211 + L2 LINE L2 2868 3039 -274 809 172 25 6 chr3 200922954 200923111 -17114047 - MER90 LTR ERV1 0 614 455 * 865 172 13 6 chr3 200923102 200923259 -17113899 - MER90 LTR ERV1 -417 158 1 233 245 82 106 chr3 200923343 200923551 -17113607 + L2 LINE L2 2977 3179 -93 2137 121 7 0 chr3 200923894 200924199 -17112959 + AluSx SINE Alu 3 309 -3 782 269 16 5 chr3 200924342 200924535 -17112623 - MIR SINE MIR -66 196 2 2205 103 10 7 chr3 200925070 200925380 -17111778 - AluSx SINE Alu -1 311 1 1821 149 0 32 chr3 200926235 200926544 -17110614 + AluJb SINE Alu 1 299 -13 2651 13 0 10 chr3 200926548 200926855 -17110303 + AluYa5 SINE Alu 1 304 -7 29 90 0 0 chr3 200927223 200927301 -17109857 + GC_rich Low_complexity Low_complexity 1 78 0 216 197 0 66 chr3 200927669 200927730 -17109428 - L2 LINE L2 -1 3271 3215 2258 66 10 17 chr3 200927782 200928083 -17109075 + AluSc SINE Alu 1 299 -10 2350 68 7 3 chr3 200928250 200928558 -17108600 + AluSc SINE Alu 1 309 0 1969 102 13 25 chr3 200928776 200929090 -17108068 + AluY SINE Alu 1 310 -1 1855 145 7 0 chr3 200929092 200929408 -17107750 + AluSx SINE Alu 4 312 0 2304 83 0 7 chr3 200929488 200929790 -17107368 + AluSp SINE Alu 1 300 -13 190 336 106 10 chr3 200930574 200930678 -17106480 + L2 LINE L2 3199 3312 -1 893 185 0 0 chr3 200930985 200931131 -17106027 + FRAM SINE Alu 9 154 -22 1855 96 41 4 chr3 200931150 200931441 -17105717 + AluSc SINE Alu 1 301 0 1557 172 20 17 chr3 200931441 200931738 -17105420 + AluJo SINE Alu 2 299 -13 1925 98 7 18 chr3 200932135 200932269 -17104889 + AluSx SINE Alu 1 135 -170 2422 78 0 0 chr3 200932269 200932575 -17104583 + AluY SINE Alu 2 307 -4 1925 98 7 18 chr3 200932575 200932748 -17104410 + AluSx SINE Alu 135 305 0 2070 119 37 0 chr3 200934796 200935091 -17102067 + AluSc SINE Alu 1 306 -3 248 276 0 0 chr3 200935569 200935627 -17101531 + CT-rich Low_complexity Low_complexity 5 62 0 675 276 14 105 chr3 200936404 200936533 -17100625 - MIR SINE MIR 0 262 172 2245 82 0 0 chr3 200936533 200936815 -17100343 - AluSc SINE Alu -12 297 16 675 276 14 105 chr3 200936815 200936971 -17100187 - MIR SINE MIR -90 172 3 1766 138 7 17 chr3 200937136 200937434 -17099724 - AluJb SINE Alu -17 295 1 374 291 59 85 chr3 200937666 200938019 -17099139 - L1 LINE L1 -2863 3985 1610 227 286 133 19 chr3 200938149 200938254 -17098904 - L2 LINE L2 0 3272 3156 201 322 67 0 chr3 200939013 200939103 -17098055 - MIR SINE MIR -25 237 142 2143 92 7 23 chr3 200939103 200939407 -17097751 - AluSq SINE Alu -14 299 1 438 352 135 7 chr3 200939483 200939764 -17097394 - L2 LINE L2 -540 2774 2458 2211 85 0 7 chr3 200941730 200942036 -17095122 - AluSx SINE Alu -8 304 1 1010 103 0 0 chr3 200942369 200942515 -17094643 - AluSp/q SINE Alu -2 311 166 1316 26 0 0 chr3 200942634 200942786 -17094372 - AluSp SINE Alu -160 153 2 186 43 0 0 chr3 200942867 200942890 -17094268 + (TG)n Simple_repeat Simple_repeat 2 24 0 2201 120 0 0 chr3 200943295 200943604 -17093554 - AluSx SINE Alu -3 309 1 302 323 54 0 chr3 200943605 200943698 -17093460 + L2 LINE L2 3175 3272 0 189 0 0 0 chr3 200943701 200943722 -17093436 + (TGAA)n Simple_repeat Simple_repeat 2 22 0 985 48 0 0 chr3 200943864 200943990 -17093168 - AluSg/x SINE Alu 0 312 187 613 119 0 0 chr3 200943990 200944074 -17093084 - AluSg SINE Alu -225 85 2 25 0 0 0 chr3 200944078 200944103 -17093055 + AT_rich Low_complexity Low_complexity 1 25 0 414 318 56 15 chr3 200944670 200944885 -17092273 + MIR SINE MIR 28 249 -13 414 253 101 57 chr3 200945126 200945284 -17091874 - MIR3 SINE MIR -4 204 40 1120 109 27 33 chr3 200945628 200945812 -17091346 - AluSg/x SINE Alu -13 297 115 213 172 17 35 chr3 200948147 200948205 -17088953 + (CCCCAG)n Simple_repeat Simple_repeat 2 58 0 194 231 0 19 chr3 200948699 200948751 -17088407 + MIR SINE MIR 92 142 -66 570 256 143 13 chr3 200948763 200948993 -17088165 - MIR SINE MIR -1 261 2 23 0 0 0 chr3 200949688 200949711 -17087447 + AT_rich Low_complexity Low_complexity 1 23 0 2223 95 0 0 chr3 200949720 200950015 -17087143 - AluSg SINE Alu -15 295 1 279 268 161 5 chr3 200950026 200950250 -17086908 - L1ME4a LINE L1 -1 6120 5862 276 264 7 68 chr3 200950280 200950428 -17086730 - L1ME4a LINE L1 -339 5782 5644 2437 68 0 3 chr3 200950550 200950861 -17086297 - AluSg SINE Alu 0 310 1 1890 139 0 10 chr3 200951185 200951479 -17085679 - AluJb SINE Alu -21 291 1 262 312 11 0 chr3 200951494 200951587 -17085571 + L2 LINE L2 2424 2517 -797 2268 76 0 10 chr3 200951595 200951897 -17085261 - AluY SINE Alu -12 299 1 420 177 38 0 chr3 200951981 200952060 -17085098 - AluJ/FLAM SINE Alu -228 84 3 2043 115 24 3 chr3 200952072 200952367 -17084791 - AluSq SINE Alu -12 301 1 340 293 109 46 chr3 200952367 200952784 -17084374 + L2 LINE L2 2616 3059 -213 644 290 81 23 chr3 200952977 200953198 -17083960 - MIR SINE MIR -20 242 9 2317 98 3 0 chr3 200954320 200954627 -17082531 - AluSq SINE Alu -5 308 1 2524 64 0 3 chr3 200955296 200955609 -17081549 - AluSx SINE Alu 0 312 1 238 270 118 99 chr3 200955613 200955765 -17081393 + L2 LINE L2 3156 3310 -3 293 362 58 40 chr3 200955989 200956213 -17080945 - MIR SINE MIR -10 252 25 524 238 16 16 chr3 200956256 200956382 -17080776 + L2 LINE L2 3141 3266 -6 2183 102 0 0 chr3 200956768 200957071 -17080087 - AluSx SINE Alu -9 303 1 183 329 51 0 chr3 200957445 200957524 -17079634 + L2 LINE L2 2909 2991 -281 237 169 197 0 chr3 200957669 200957740 -17079418 + L2 LINE L2 3186 3270 -2 2329 106 0 0 chr3 200957879 200958191 -17078967 - AluSx SINE Alu 0 312 1 813 105 9 0 chr3 200958192 200958306 -17078852 - AluSq/x SINE Alu -178 135 21 432 260 171 0 chr3 200958543 200958689 -17078469 - MIR SINE MIR -91 171 1 289 346 11 61 chr3 200959092 200959215 -17077943 + L2 LINE L2 2815 2943 -329 2137 114 0 3 chr3 200959215 200959514 -17077644 - AluSx SINE Alu -14 298 1 289 346 11 61 chr3 200959514 200959549 -17077609 + L2 LINE L2 2943 2978 -294 2329 93 0 0 chr3 200959549 200959860 -17077298 - AluSx SINE Alu -1 311 1 289 346 11 61 chr3 200959860 200959963 -17077195 + L2 LINE L2 2978 3064 -208 330 194 0 0 chr3 200960134 200960201 -17076957 + GA-rich Low_complexity Low_complexity 4 70 0 197 300 0 0 chr3 200961338 200961388 -17075770 - L2 LINE L2 -23 3249 3200 244 238 0 49 chr3 200962778 200962900 -17074258 + C-rich Low_complexity Low_complexity 3 118 0 256 206 31 31 chr3 200963362 200963459 -17073699 + (CA)n Simple_repeat Simple_repeat 1 97 0 1086 46 17 23 chr3 200964007 200964180 -17072978 + (TTTC)n Simple_repeat Simple_repeat 1 172 0 2202 98 10 0 chr3 200964192 200964488 -17072670 + AluSq SINE Alu 1 299 -14 700 237 134 35 chr3 200964488 200964720 -17072438 + MIR SINE MIR 7 261 -1 22 0 0 0 chr3 200964757 200964779 -17072379 + AT_rich Low_complexity Low_complexity 1 22 0 2154 84 40 3 chr3 200964823 200965122 -17072036 - AluSg SINE Alu 0 310 1 1921 155 0 0 chr3 200965122 200965419 -17071739 - AluJb SINE Alu -15 297 1 2109 109 3 7 chr3 200965646 200965948 -17071210 + AluSx SINE Alu 1 301 -11 317 261 61 35 chr3 200966575 200966690 -17070468 - L2 LINE L2 0 3272 3155 277 284 92 18 chr3 200968491 200968600 -17068558 - L2 LINE L2 0 3313 3197 201 322 67 0 chr3 200969359 200969449 -17067709 - MIR SINE MIR -25 237 142 2143 92 7 23 chr3 200969449 200969753 -17067405 - AluSq SINE Alu -14 299 1 438 352 135 7 chr3 200969829 200970110 -17067048 - L2 LINE L2 -540 2774 2458 2144 98 0 7 chr3 200972075 200972381 -17064777 - AluSx SINE Alu -8 304 1 606 152 61 0 chr3 200972398 200972497 -17064661 - FLAM_C SINE Alu -25 118 14 236 224 120 32 chr3 200972532 200972657 -17064501 + Charlie7 DNA MER1_type 2477 2612 0 22 35 0 0 chr3 200975691 200975720 -17061438 + GC_rich Low_complexity Low_complexity 1 29 0 1019 147 56 0 chr3 200976106 200976304 -17060854 - MER2 DNA MER2_type -136 209 1 1238 145 11 60 chr3 200976304 200976573 -17060585 + L1MB4 LINE L1 5785 6040 -140 1850 77 0 0 chr3 200976573 200976807 -17060351 - AluSg1 SINE Alu -75 234 1 361 263 178 7 chr3 200977314 200977466 -17059692 - MIR SINE MIR -17 245 68 2144 123 13 0 chr3 200978038 200978346 -17058812 - AluSx SINE Alu 0 312 1 332 278 139 58 chr3 200978585 200978808 -17058350 + L1ME4a LINE L1 5880 6120 -1 1902 127 17 3 chr3 200979296 200979588 -17057570 + AluSx SINE Alu 7 302 -10 2241 93 0 7 chr3 200979596 200979896 -17057262 + AluSx SINE Alu 1 298 -14 2184 118 3 0 chr3 200980335 200980641 -17056517 - AluSg SINE Alu -3 307 1 200 213 64 0 chr3 200981347 200981394 -17055764 + L2 LINE L2 3025 3074 -239 198 0 0 0 chr3 200981415 200981437 -17055721 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 * 216 0 0 0 chr3 200981436 200981460 -17055698 + (TA)n Simple_repeat Simple_repeat 2 25 0 2219 98 0 3 chr3 200981460 200981755 -17055403 - AluSx SINE Alu -18 294 1 184 57 29 29 chr3 200981777 200981812 -17055346 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 765 220 24 76 chr3 200981818 200982022 -17055136 + L2 LINE L2 3073 3263 -50 2267 84 3 3 chr3 200982022 200982321 -17054837 + AluSp SINE Alu 1 299 -14 765 220 24 76 chr3 200982321 200982366 -17054792 + L2 LINE L2 3263 3309 -4 523 273 155 0 chr3 200982436 200982597 -17054561 + MER5A DNA MER1_type 4 189 0 758 153 0 49 chr3 200982610 200982754 -17054404 + FLAM_C SINE Alu 7 143 0 413 65 0 0 chr3 200982858 200982920 -17054238 + AluSp/q SINE Alu 242 303 0 2079 112 17 0 chr3 200984069 200984363 -17052795 - AluSx SINE Alu -13 299 1 2417 172 21 27 chr3 200984822 200984998 -17052160 - MER41D LTR ERV1 0 557 381 2251 99 6 6 chr3 200984998 200985310 -17051848 - AluSx SINE Alu 0 312 1 2417 172 21 27 chr3 200985310 200985615 -17051543 - MER41D LTR ERV1 -176 381 76 2163 75 0 27 chr3 200985615 200985946 -17051212 - AluSq SINE Alu 0 323 1 2417 172 21 27 chr3 200985946 200985973 -17051185 - MER41D LTR ERV1 -481 76 50 2038 70 4 7 chr3 200985974 200986245 -17050913 - AluSq SINE Alu -4 309 40 260 315 98 28 chr3 200986333 200986476 -17050682 - Tigger8 DNA MER2_type -436 230 78 196 326 269 0 chr3 200987723 200987864 -17049294 - MIR SINE MIR -30 232 54 863 174 0 0 chr3 200988316 200988448 -17048710 + FLAM_C SINE Alu 1 132 -1 292 74 0 37 chr3 200988448 200988502 -17048656 + (GGGAA)n Simple_repeat Simple_repeat 1 52 0 368 335 68 68 chr3 200988569 200988790 -17048368 - L1MEc LINE L1 -2839 3376 2019 448 354 19 0 chr3 200989982 200990143 -17047015 + MIR SINE MIR 79 242 -20 1146 112 0 4 chr3 200990739 200990987 -17046171 + (TGGA)n Simple_repeat Simple_repeat 1 248 0 180 286 29 29 chr3 200991032 200991102 -17046056 + L2 LINE L2 3197 3266 -6 477 244 79 24 chr3 200991405 200991569 -17045589 - MIR SINE MIR -54 208 36 407 329 41 7 chr3 200993196 200993342 -17043816 - MIR3 SINE MIR -31 177 27 2299 90 7 0 chr3 200993516 200993826 -17043332 - AluSp SINE Alu -1 312 1 308 349 8 24 chr3 200994782 200994908 -17042250 + MIR SINE MIR 20 143 -119 194 388 0 12 chr3 200995029 200995109 -17042049 + L2 LINE L2 3133 3211 -61 2366 84 0 0 chr3 200995138 200995436 -17041722 + AluSc SINE Alu 2 299 -10 204 244 0 0 chr3 200995440 200995485 -17041673 + (TGAA)n Simple_repeat Simple_repeat 3 47 0 922 236 21 21 chr3 200996946 200997179 -17039979 + MIR SINE MIR 18 250 -12 779 285 5 0 chr3 200998064 200998250 -17038908 + MIR SINE MIR 61 247 -15 25 75 0 0 chr3 200998354 200998407 -17038751 + GC_rich Low_complexity Low_complexity 1 53 0 251 259 36 29 chr3 200998611 200998750 -17038408 + (CCCG)n Simple_repeat Simple_repeat 3 142 0 25 0 0 0 chr3 200998807 200998832 -17038326 + GC_rich Low_complexity Low_complexity 1 25 0 187 164 10 48 chr3 200998930 200999034 -17038124 + G-rich Low_complexity Low_complexity 2 101 0 24 0 0 0 chr3 200999070 200999094 -17038064 + GC_rich Low_complexity Low_complexity 1 24 0 272 267 12 12 chr3 201002083 201002169 -17034989 + G-rich Low_complexity Low_complexity 4 89 0 661 266 64 16 chr3 201002560 201002748 -17034410 + MIR SINE MIR 20 216 -46 2337 60 20 3 chr3 201003780 201004080 -17033078 + AluSp SINE Alu 1 305 -8 219 252 20 37 chr3 201007413 201007684 -17029474 + GA-rich Low_complexity Low_complexity 1 266 0 907 153 0 0 chr3 201008799 201008930 -17028228 + FLAM_C SINE Alu 1 131 -2 299 282 107 39 chr3 201009101 201009410 -17027748 + L1MEd LINE L1 868 1197 -4922 336 261 228 43 chr3 201009415 201009626 -17027532 + HAL1 LINE L1 1405 1654 -853 1698 121 72 17 chr3 201009781 201009933 -17027225 - AluSx SINE Alu -6 306 164 2303 91 0 0 chr3 201009933 201010240 -17026918 - AluSc SINE Alu -2 307 1 1698 121 72 17 chr3 201010240 201010377 -17026781 - AluSx SINE Alu -148 164 1 752 250 6 6 chr3 201010460 201010636 -17026522 + MLT1F LTR MaLR 1 176 -366 1049 163 0 0 chr3 201010638 201010830 -17026328 - AluJb SINE Alu 0 311 120 714 276 121 5 chr3 201010877 201011179 -17025979 + L1M4 LINE L1 3712 4082 -2064 2209 122 0 0 chr3 201011179 201011483 -17025675 - AluSx SINE Alu -8 304 1 714 276 121 5 chr3 201011483 201011619 -17025539 + L1M4 LINE L1 4082 4201 -1945 215 313 125 0 chr3 201011965 201012077 -17025081 + L2 LINE L2 3188 3313 0 753 349 101 15 chr3 201012245 201012829 -17024329 - L2 LINE L2 -836 2478 1845 888 144 0 8 chr3 201013030 201013162 -17023996 + FLAM_C SINE Alu 1 131 -2 497 228 13 67 chr3 201013262 201013337 -17023821 - MIR SINE MIR -5 257 192 2010 124 7 13 chr3 201013337 201013499 -17023659 - AluSx SINE Alu -16 296 135 2162 110 7 3 chr3 201013499 201013808 -17023350 - AluSp SINE Alu -3 310 1 2010 124 7 13 chr3 201013808 201013943 -17023215 - AluSx SINE Alu -177 135 1 497 228 13 67 chr3 201013943 201014016 -17023142 - MIR SINE MIR -70 192 117 231 279 45 54 chr3 201014181 201014292 -17022866 + L2 LINE L2 3148 3257 -15 27 87 0 0 chr3 201014857 201014926 -17022232 + GC_rich Low_complexity Low_complexity 1 69 0 2378 95 0 13 chr3 201016746 201017062 -17020096 + AluSx SINE Alu 1 312 0 432 176 33 0 chr3 201017085 201017176 -17019982 + MIR SINE MIR 98 191 -71 2102 128 3 0 chr3 201017176 201017481 -17019677 + AluSx SINE Alu 1 306 -6 243 284 0 0 chr3 201017511 201017578 -17019580 - MLT1K LTR MaLR -1 587 521 398 288 76 23 chr3 201018136 201018268 -17018890 + L1ME4a LINE L1 5946 6084 -37 2172 101 3 0 chr3 201018269 201018567 -17018591 - AluSq SINE Alu -2 311 13 236 301 129 11 chr3 201019134 201019218 -17017940 + MIR SINE MIR 37 131 -77 759 250 56 60 chr3 201019218 201019289 -17017869 + MIR SINE MIR 4 74 -188 2110 112 0 3 chr3 201019289 201019584 -17017574 - AluSq SINE Alu -14 299 6 759 250 56 60 chr3 201019584 201019764 -17017394 + MIR SINE MIR 74 254 -8 518 278 118 16 chr3 201020823 201021010 -17016148 + MIR SINE MIR 29 234 -28 2440 53 0 3 chr3 201021022 201021321 -17015837 - AluY SINE Alu -13 298 1 279 0 0 0 chr3 201021775 201021806 -17015352 + (TG)n Simple_repeat Simple_repeat 2 32 0 1882 112 0 0 chr3 201021906 201022023 -17015135 - AluSg SINE Alu -59 251 135 2177 97 0 10 chr3 201022023 201022334 -17014824 - AluSc SINE Alu -1 308 1 1882 112 0 0 chr3 201022334 201022467 -17014691 - AluSg SINE Alu -174 136 1 1402 193 59 4 chr3 201022615 201022719 -17014439 + AluJo SINE Alu 13 110 -202 186 43 0 0 chr3 201022719 201022742 -17014416 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 1402 193 59 4 chr3 201022742 201022907 -17014251 + AluJo SINE Alu 110 297 -15 300 355 81 0 chr3 201022925 201023049 -17014109 + L3 LINE CR1 1394 1527 -50 1555 209 57 64 chr3 201023494 201023562 -17013596 + MLT1C LTR MaLR 1 68 -399 1899 153 10 10 chr3 201023562 201023856 -17013302 + AluJo SINE Alu 1 294 -18 1555 209 57 64 chr3 201023856 201023914 -17013244 + MLT1C LTR MaLR 68 125 -342 993 128 94 179 chr3 201023914 201024096 -17013062 + AluSx SINE Alu 2 145 -157 216 0 0 0 chr3 201024096 201024120 -17013038 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 993 128 94 179 chr3 201024120 201024266 -17012892 + AluSx SINE Alu 145 302 0 1555 209 57 64 chr3 201024266 201024608 -17012550 + MLT1C LTR MaLR 125 467 0 2231 108 3 0 chr3 201024632 201024919 -17012239 + AluSx SINE Alu 1 288 -24 2603 64 0 0 chr3 201024923 201025221 -17011937 + AluY SINE Alu 1 298 -13 2220 109 48 28 chr3 201025398 201025755 -17011403 - THE1B LTR MaLR 0 364 1 335 265 42 127 chr3 201025859 201025961 -17011197 + L1ME4a LINE L1 5873 5982 -139 1842 183 20 0 chr3 201025961 201026267 -17010891 + AluJb SINE Alu 1 312 0 335 265 42 127 chr3 201026267 201026424 -17010734 + L1ME4a LINE L1 5982 6110 -11 1177 193 155 11 chr3 201026434 201026698 -17010460 - AluJb SINE Alu 0 302 1 1884 163 14 0 chr3 201026802 201027097 -17010061 + AluSq SINE Alu 1 299 -14 715 239 130 38 chr3 201027097 201027329 -17009829 + MIR SINE MIR 5 261 -1 310 256 85 0 chr3 201027331 201027413 -17009745 - L1ME4a LINE L1 -67 6054 5966 2309 80 40 3 chr3 201027432 201027731 -17009427 - AluSg SINE Alu 0 310 1 1903 145 3 14 chr3 201027739 201028028 -17009130 - AluY SINE Alu -25 286 1 377 316 19 0 chr3 201028050 201028205 -17008953 - L1ME4a LINE L1 -303 5818 5661 2002 99 4 0 chr3 201030178 201030431 -17006727 - AluSp SINE Alu -5 308 55 1070 71 64 7 chr3 201030431 201030571 -17006587 - AluSp SINE Alu -165 148 1 1761 92 130 0 chr3 201030962 201031223 -17005935 - AluY SINE Alu -6 295 1 537 312 56 14 chr3 201031298 201031513 -17005645 + MIR SINE MIR 1 224 -38 399 246 147 37 chr3 201033936 201034127 -17003031 - L3 LINE CR1 -51 1526 1315 2392 103 0 0 chr3 201034184 201034486 -17002672 + AluSx SINE Alu 1 302 -10 479 317 86 81 chr3 201034608 201035029 -17002129 - L3 LINE CR1 -358 1219 792 2227 103 7 0 chr3 201035029 201035321 -17001837 - AluSq SINE Alu -15 298 5 479 317 86 81 chr3 201035321 201035540 -17001618 - L3 LINE CR1 -785 792 576 2284 119 0 0 chr3 201036802 201037112 -17000046 + AluSp SINE Alu 2 311 -2 263 139 12 47 chr3 201040052 201040138 -16997020 + C-rich Low_complexity Low_complexity 1 83 0 2355 73 7 7 chr3 201040409 201040709 -16996449 + AluSp SINE Alu 1 300 -13 243 267 9 95 chr3 201041326 201041431 -16995727 + MIR SINE MIR 89 185 -23 243 341 0 11 chr3 201041681 201041782 -16995376 + G-rich Low_complexity Low_complexity 1 99 0 458 321 17 14 chr3 201041870 201042148 -16995010 + GA-rich Low_complexity Low_complexity 1 278 0 1035 105 0 0 chr3 201042234 201042367 -16994791 - AluSq/x SINE Alu -180 133 1 272 111 67 0 chr3 201042367 201042412 -16994746 - MIR SINE MIR -96 166 119 678 231 17 17 chr3 201042628 201042801 -16994357 + AluJo SINE Alu 2 174 -138 417 295 137 55 chr3 201042874 201043203 -16993955 - HAL1 LINE L1 -1231 1276 921 240 283 50 30 chr3 201143464 201143563 -16893595 - MIR SINE MIR -75 133 33 529 234 128 7 chr3 201144186 201144327 -16892831 + MIR SINE MIR 14 171 -91 2361 94 0 19 chr3 201144327 201144645 -16892513 - AluSx SINE Alu 0 312 1 291 259 7 44 chr3 201144656 201144791 -16892367 + CT-rich Low_complexity Low_complexity 3 132 0 208 289 0 53 chr3 201144894 201144970 -16892188 - L2 LINE L2 -57 3215 3144 1838 149 38 3 chr3 201145819 201146108 -16891050 + AluJb SINE Alu 2 300 -12 732 205 0 8 chr3 201146454 201146581 -16890577 + FLAM_A SINE Alu 1 126 -7 180 77 0 0 chr3 201148297 201148323 -16888835 + (T)n Simple_repeat Simple_repeat 1 26 0 6470 117 96 17 chr3 201148638 201149779 -16887379 + Tigger3b DNA MER2_type 1 1231 0 371 261 108 6 chr3 201149850 201150007 -16887151 + MLT1K LTR MaLR 412 584 -4 26 30 0 0 chr3 201152297 201152330 -16884828 + AT_rich Low_complexity Low_complexity 1 33 0 278 180 0 0 chr3 201153062 201153112 -16884046 + MER112 DNA MER1_type 1 50 -210 789 159 129 0 chr3 201153114 201153277 -16883881 + AluSp SINE Alu 2 185 -128 3775 59 51 2 chr3 201153379 201153904 -16883254 + HUERS-P1 LTR ERV1 5710 6260 -3 4046 65 23 68 chr3 201153906 201154451 -16882707 + LTR8 LTR ERV1 1 516 -175 2575 75 0 0 chr3 201154451 201154759 -16882399 + AluSc SINE Alu 1 308 -1 4046 65 23 68 chr3 201154759 201154828 -16882330 + LTR8 LTR ERV1 516 587 -104 379 247 36 143 chr3 201155427 201155678 -16881480 - MIR SINE MIR 0 262 39 1827 156 23 10 chr3 201156072 201156380 -16880778 + AluJo SINE Alu 1 312 0 343 315 111 17 chr3 201156427 201156608 -16880550 + MIR SINE MIR 58 255 -7 * 432 241 148 137 chr3 201156596 201157057 -16880101 - L2 LINE L2 -13 3300 2835 266 257 257 0 chr3 201157404 201157509 -16879649 + MIR SINE MIR 121 252 -10 355 220 170 0 chr3 201157657 201157757 -16879401 - L2 LINE L2 -1 3271 3155 1705 123 0 16 chr3 201157767 201158011 -16879147 + AluSx SINE Alu 58 297 -15 765 287 63 41 chr3 201158150 201158467 -16878691 - L2 LINE L2 -1 3271 2948 249 317 8 8 chr3 201159095 201159218 -16877940 + (CA)n Simple_repeat Simple_repeat 1 123 0 411 184 0 0 chr3 201159681 201159768 -16877390 + (TG)n Simple_repeat Simple_repeat 1 87 0 2237 119 0 0 chr3 201161159 201161453 -16875705 - AluSq SINE Alu -19 294 1 238 319 32 0 chr3 201162443 201162537 -16874621 + MIR3 SINE MIR 109 205 -3 2357 92 0 10 chr3 201162549 201162853 -16874305 + AluSx SINE Alu 1 301 -11 231 217 17 0 chr3 201163881 201163941 -16873217 + (TCTCTG)n Simple_repeat Simple_repeat 5 65 0 256 321 41 55 chr3 201164514 201164953 -16872205 + L2 LINE L2 2545 2977 -337 324 185 25 37 chr3 201165034 201165115 -16872043 - MIR3 SINE MIR -20 188 109 2229 102 0 3 chr3 201165377 201165672 -16871486 - AluSx SINE Alu -18 294 1 586 238 84 0 chr3 201165839 201165982 -16871176 + MIR SINE MIR 20 174 -88 195 234 21 128 chr3 201166415 201166509 -16870649 + L3b LINE CR1 1265 1348 -235 191 327 0 0 chr3 201167380 201167432 -16869726 - L3 LINE CR1 -5 1572 1521 491 292 124 20 chr3 201167771 201167973 -16869185 + MIR SINE MIR 13 235 -27 276 275 125 0 chr3 201167973 201168053 -16869105 + L2 LINE L2 3189 3278 -35 328 291 108 18 chr3 201168070 201168286 -16868872 - L1MCa LINE L1 -2873 3553 2237 329 138 31 0 chr3 201168299 201168364 -16868794 + CT-rich Low_complexity Low_complexity 1 67 0 2129 140 0 9 chr3 201168366 201168681 -16868477 - AluJo SINE Alu 0 312 1 2282 97 7 0 chr3 201169594 201169884 -16867274 + AluSq SINE Alu 11 302 -11 26 30 0 0 chr3 201170006 201170039 -16867119 + AT_rich Low_complexity Low_complexity 1 33 0 2234 122 0 0 chr3 201170192 201170488 -16866670 - AluSx SINE Alu -16 296 1 249 288 0 41 chr3 201172079 201172152 -16865006 + L3 LINE CR1 651 720 -857 1571 135 42 19 chr3 201172272 201172532 -16864626 + AluSg SINE Alu 28 293 -17 351 0 0 0 chr3 201172598 201172637 -16864521 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 421 239 130 0 chr3 201172641 201172779 -16864379 + MER112 DNA MER1_type 105 260 0 271 311 95 7 chr3 201172788 201172936 -16864222 - L2 LINE L2 -458 2856 2696 252 342 51 26 chr3 201172946 201173063 -16864095 + L3 LINE CR1 1075 1194 -383 325 67 0 0 chr3 201173136 201173181 -16863977 + MADE1 DNA Mariner 1 45 -35 371 242 30 40 chr3 201173216 201173315 -16863843 + L3 LINE CR1 1288 1385 -192 960 260 86 58 chr3 201173428 201174135 -16863023 - L1ME4a LINE L1 -9 6112 5386 1540 154 75 26 chr3 201175351 201175657 -16861501 + L1MC1 LINE L1 6011 6331 -2 2307 101 13 0 chr3 201175663 201175970 -16861188 + AluSx SINE Alu 1 311 -1 455 223 0 11 chr3 201176158 201176252 -16860906 + L2 LINE L2 2947 3039 -274 441 308 141 4 chr3 201176288 201176515 -16860643 - MLT1J2 LTR MaLR -126 324 67 952 247 78 22 chr3 201176557 201176828 -16860330 + L2 LINE L2 3027 3312 -1 294 289 0 33 chr3 201176943 201177033 -16860125 - L2 LINE L2 -16 3256 3170 400 255 64 57 chr3 201177792 201177933 -16859225 - MLT1J LTR MaLR -143 368 227 1884 250 50 43 chr3 201177933 201178380 -16858778 - MLT1E LTR MaLR 0 593 140 1813 192 0 13 chr3 201178380 201178692 -16858466 + AluJo SINE Alu 1 308 -4 1884 250 50 43 chr3 201178692 201178824 -16858334 - MLT1E LTR MaLR -453 140 10 593 242 158 0 chr3 201178826 201178991 -16858167 - MLT1J LTR MaLR -274 237 47 201 279 115 39 chr3 201179059 201179163 -16857995 + MIR3 SINE MIR 15 126 -82 2530 72 0 0 chr3 201179272 201179565 -16857593 + AluSg SINE Alu 1 293 -17 252 292 58 58 chr3 201179575 201179729 -16857429 + MIR SINE MIR 53 206 -56 244 244 104 61 chr3 201179907 201180022 -16857136 - MIR SINE MIR -60 148 29 2304 91 23 7 chr3 201180205 201180512 -16856646 + AluSx SINE Alu 1 312 0 297 260 31 52 chr3 201180553 201180649 -16856509 + MIR SINE MIR 112 205 -57 831 216 95 26 chr3 201180651 201180882 -16856276 - MIR SINE MIR -1 261 15 315 338 82 13 chr3 201181127 201181300 -16855858 + MIR SINE MIR 5 188 -74 194 309 149 18 chr3 201181553 201181721 -16855437 - L2 LINE L2 -234 3038 2849 1389 257 123 95 chr3 201181743 201182276 -16854882 + HAL1 LINE L1 2 519 -1988 1665 108 12 21 chr3 201182276 201182517 -16854641 - AluSg/x SINE Alu -3 307 69 1389 257 123 95 chr3 201182517 201183436 -16853722 + HAL1 LINE L1 519 1494 -1013 511 254 6 29 chr3 201183441 201183543 -16853615 + L1MB7 LINE L1 6005 6103 -81 688 217 8 0 chr3 201183543 201183672 -16853486 - FLAM_A SINE Alu -2 131 2 511 254 6 29 chr3 201183672 201183742 -16853416 + L1MB7 LINE L1 6103 6173 -11 989 114 0 0 chr3 201183960 201184092 -16853066 - AluSq/x SINE Alu -181 132 1 246 269 161 0 chr3 201184221 201184314 -16852844 + L2 LINE L2 3205 3312 -1 25 0 0 0 chr3 201185029 201185054 -16852104 + AT_rich Low_complexity Low_complexity 1 25 0 679 178 0 38 chr3 201185363 201185548 -16851610 + CT-rich Low_complexity Low_complexity 3 180 0 2535 93 0 0 chr3 201185601 201185911 -16851247 - AluSx SINE Alu -2 310 1 839 170 85 6 chr3 201187933 201188098 -16849060 + MER5B DNA MER1_type 1 178 0 191 86 0 29 chr3 201188104 201188139 -16849019 + (GGAA)n Simple_repeat Simple_repeat 4 37 0 183 129 0 0 chr3 201188597 201188628 -16848530 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 302 216 0 54 chr3 201188881 201188955 -16848203 - MIR SINE MIR -57 151 82 2331 118 0 0 chr3 201189308 201189614 -16847544 + AluSx SINE Alu 1 306 -6 2298 109 13 0 chr3 201189816 201190120 -16847038 - AluSq SINE Alu -5 308 1 314 203 0 54 chr3 201190342 201190416 -16846742 + MIR SINE MIR 82 151 -57 360 94 0 0 chr3 201191193 201191246 -16845912 + (CA)n Simple_repeat Simple_repeat 2 54 0 264 335 102 19 chr3 201191406 201191621 -16845537 - L2 LINE L2 -215 3057 2825 2203 136 0 0 chr3 201191765 201192074 -16845084 + AluSx SINE Alu 1 309 -3 403 252 41 33 chr3 201192511 201192714 -16844444 + MIR SINE MIR 58 261 -1 294 200 91 73 chr3 201193174 201193284 -16843874 + MIR SINE MIR 72 183 -79 2351 97 0 3 chr3 201193384 201193682 -16843476 + AluSx SINE Alu 1 297 -15 764 260 53 10 chr3 201194109 201194317 -16842841 + MIR SINE MIR 25 241 -21 2355 113 0 3 chr3 201194365 201194675 -16842483 - AluSc SINE Alu 0 309 1 551 190 36 44 chr3 201194929 201195066 -16842092 + MIR SINE MIR 10 145 -117 349 244 17 97 chr3 201195476 201195598 -16841560 - L2 LINE L2 -181 3091 2986 1144 263 124 15 chr3 201195598 201196066 -16841092 - LTR33 LTR ERVL 0 521 3 349 244 17 97 chr3 201196066 201196119 -16841039 - L2 LINE L2 -286 2986 2930 568 318 170 3 chr3 201196178 201196496 -16840662 - L2 LINE L2 -481 2833 2463 512 284 63 36 chr3 201197963 201198185 -16838973 - MIR SINE MIR -31 231 4 2338 115 0 3 chr3 201198322 201198635 -16838523 - AluSx SINE Alu 0 312 1 238 339 119 8 chr3 201198668 201198786 -16838372 + L2 LINE L2 3142 3272 0 491 229 41 0 chr3 201199172 201199294 -16837864 - MIR SINE MIR -55 207 81 443 275 102 24 chr3 201199498 201199665 -16837493 - MIR SINE MIR -70 192 13 2354 107 0 0 chr3 201200680 201200978 -16836180 - AluSx SINE Alu -14 298 1 391 269 154 0 chr3 201201227 201201376 -16835782 - MIR SINE MIR -2 260 89 2355 96 0 0 chr3 201201469 201201771 -16835387 - AluSg SINE Alu -8 302 1 421 247 100 41 chr3 201202305 201202475 -16834683 - MIR3 SINE MIR -6 202 23 385 186 31 4 chr3 201203558 201203664 -16833494 - MIR SINE MIR -62 146 80 290 330 38 29 chr3 201204451 201204660 -16832498 + L2 LINE L2 2851 3061 -211 183 329 57 0 chr3 201204944 201205014 -16832144 + MIR SINE MIR 189 262 0 395 296 80 25 chr3 201205065 201205227 -16831931 + MIR3 SINE MIR 17 187 -21 535 274 58 1 chr3 201206582 201206740 -16830418 - MIR SINE MIR -62 146 13 181 365 17 26 chr3 201207111 201207226 -16829932 + MIR SINE MIR 34 147 -61 210 150 0 0 chr3 201207903 201207943 -16829215 + (T)n Simple_repeat Simple_repeat 1 40 0 995 219 52 0 chr3 201208084 201208317 -16828841 - MIR SINE MIR -2 260 16 803 261 10 10 chr3 201208448 201208643 -16828515 - L3 LINE CR1 -3 1574 1380 1602 59 0 5 chr3 201208654 201208841 -16828317 + AluSc SINE Alu 1 186 -123 1703 234 129 22 chr3 201209007 201209635 -16827523 + HAL1 LINE L1 1582 2276 -231 1474 220 95 37 chr3 201209635 201210061 -16827097 - LTR16C LTR ERVL 0 491 41 1367 116 27 5 chr3 201210061 201210176 -16826982 + MER30 DNA MER1_type 1 112 -118 2223 72 0 38 chr3 201210176 201210466 -16826692 + AluY SINE Alu 1 279 -32 216 0 0 0 chr3 201210468 201210492 -16826666 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1367 116 27 5 chr3 201210492 201210597 -16826561 + MER30 DNA MER1_type 112 229 -1 395 254 75 42 chr3 201210628 201210868 -16826290 + HAL1 LINE L1 2257 2504 -3 247 214 14 43 chr3 201211598 201211668 -16825490 + MIR SINE MIR 88 155 -107 299 230 0 0 chr3 201211702 201211740 -16825418 + A-rich Low_complexity Low_complexity 1 41 -33 2308 115 3 6 chr3 201211740 201212052 -16825106 + AluSp SINE Alu 1 311 -2 299 230 0 0 chr3 201212052 201212087 -16825071 + A-rich Low_complexity Low_complexity 40 74 0 230 286 0 0 chr3 201212517 201212580 -16824578 + GA-rich Low_complexity Low_complexity 4 66 0 313 216 14 14 chr3 201213015 201213089 -16824069 - MIR SINE MIR -108 154 81 316 290 56 9 chr3 201213090 201213197 -16823961 - L1M4 LINE L1 -2954 3192 3081 513 32 0 0 chr3 201213197 201213260 -16823898 + (TC)n Simple_repeat Simple_repeat 1 63 0 1823 156 35 3 chr3 201213260 201213542 -16823616 - AluJb SINE Alu -21 291 1 2241 169 0 27 chr3 201213680 201213793 -16823365 + L1PB1 LINE L1 3830 3945 -2201 2334 110 0 0 chr3 201213793 201214092 -16823066 + AluSx SINE Alu 1 299 -13 2241 169 0 27 chr3 201214092 201214416 -16822742 + L1PB1 LINE L1 3945 4255 -1891 2066 124 14 3 chr3 201214416 201214707 -16822451 + AluSq SINE Alu 1 294 -19 5327 108 4 13 chr3 201214707 201215542 -16821616 + L1PB1 LINE L1 5322 6148 -3 913 250 23 62 chr3 201215834 201216186 -16820972 - MER102b DNA MER1_type 0 341 4 239 298 86 66 chr3 201216200 201216351 -16820807 + L2 LINE L2 2882 3035 -237 354 298 10 0 chr3 201216564 201216668 -16820490 + MIR SINE MIR 89 193 -69 198 0 0 0 chr3 201216724 201216746 -16820412 + (CA)n Simple_repeat Simple_repeat 1 22 0 230 180 60 0 chr3 201216752 201216802 -16820356 - L2 LINE L2 -15 3257 3205 2332 88 7 7 chr3 201217155 201217460 -16819698 + AluSq SINE Alu 1 305 -8 285 307 87 8 chr3 201217682 201217809 -16819349 + MIR SINE MIR 8 144 -118 2107 244 44 3 chr3 201217872 201218617 -16818541 + L2 LINE L2 2350 3127 -186 472 289 176 6 chr3 201218639 201218798 -16818360 + MER91A DNA MER1_type 3 188 -8 491 234 23 76 chr3 201218808 201218979 -16818179 + L2 LINE L2 3150 3311 -2 442 291 208 43 chr3 201219341 201219714 -16817444 + L2 LINE L2 2275 2585 -729 2097 135 0 46 chr3 201219714 201220040 -16817118 - AluSx SINE Alu -1 311 1 442 291 208 43 chr3 201220040 201220268 -16816890 + L2 LINE L2 2585 2975 -339 2167 117 3 10 chr3 201220338 201220638 -16816520 + AluSx SINE Alu 1 298 -14 471 257 123 5 chr3 201220648 201220835 -16816323 + MIR SINE MIR 54 262 0 2271 97 3 3 chr3 201223611 201223910 -16813248 - AluSc SINE Alu -10 299 1 2215 97 0 27 chr3 201223911 201224209 -16812949 - AluSg SINE Alu -20 290 1 2383 110 0 0 chr3 201224224 201224534 -16812624 - AluSx SINE Alu -2 310 1 2282 116 0 0 chr3 201225158 201225461 -16811697 - AluSx SINE Alu -9 303 1 2362 110 0 0 chr3 201225764 201226064 -16811094 + AluSx SINE Alu 1 300 -12 241 226 19 0 chr3 201226577 201226630 -16810528 - MIR SINE MIR -84 124 71 284 208 66 0 chr3 201228158 201228246 -16808912 + MIR SINE MIR 22 115 -93 1699 128 3 57 chr3 201228306 201228603 -16808555 - AluJb SINE Alu -31 281 1 410 257 29 0 chr3 201229738 201229843 -16807315 + MIR SINE MIR 85 192 -70 271 349 87 7 chr3 201230067 201230216 -16806942 + L2 LINE L2 3111 3271 -1 520 284 68 0 chr3 201230657 201230833 -16806325 + MIR3 SINE MIR 4 191 -17 276 271 107 41 chr3 201232210 201232332 -16804826 - L2 LINE L2 -2 3270 3141 424 257 30 0 chr3 201232943 201233044 -16804114 - L2 LINE L2 -1 3271 3168 861 182 0 0 chr3 201233424 201233567 -16803591 + FLAM_C SINE Alu 1 143 0 577 191 19 9 chr3 201233575 201233680 -16803478 + AluJo SINE Alu 117 222 -90 312 219 0 16 chr3 201236302 201236366 -16800792 + L1MEc LINE L1 37 99 -6297 223 172 17 17 chr3 201236369 201236427 -16800731 + GA-rich Low_complexity Low_complexity 4 61 0 3288 240 138 11 chr3 201236559 201237691 -16799467 + L1MEc LINE L1 257 1531 -4865 3476 194 34 30 chr3 201237708 201237956 -16799202 + L1MB8 LINE L1 5357 5603 -575 2301 98 0 0 chr3 201237956 201238253 -16798905 + AluSx SINE Alu 1 297 -15 3476 194 34 30 chr3 201238253 201238809 -16798349 + L1MB8 LINE L1 5603 6164 -14 641 249 155 14 chr3 201238812 201239089 -16798069 + L1MEc LINE L1 1844 2159 -4237 2019 149 0 0 chr3 201239814 201240109 -16797049 + AluSx SINE Alu 1 295 -17 1043 266 115 46 chr3 201240473 201240950 -16796208 - MLT1J LTR MaLR -1 510 1 21 0 0 0 chr3 201241072 201241093 -16796065 + AT_rich Low_complexity Low_complexity 1 21 0 183 42 0 0 chr3 201241897 201241921 -16795237 + (CA)n Simple_repeat Simple_repeat 2 25 0 1470 138 9 4 chr3 201241921 201242146 -16795012 + AluJo SINE Alu 65 290 -22 25 0 0 0 chr3 201243453 201243478 -16793680 + AT_rich Low_complexity Low_complexity 1 25 0 849 207 21 21 chr3 201243695 201243883 -16793275 - MER58C DNA MER1_type 0 215 28 859 243 52 28 chr3 201245311 201245562 -16791596 - MIR SINE MIR -5 257 1 911 277 25 21 chr3 201245652 201245894 -16791264 - MIR SINE MIR -16 246 4 895 304 297 11 chr3 201246396 201247299 -16789859 + L3 LINE CR1 332 1492 -85 189 0 0 0 chr3 201247307 201247328 -16789830 + (T)n Simple_repeat Simple_repeat 1 21 0 1941 144 3 13 chr3 201247955 201248254 -16788904 + AluJb SINE Alu 1 296 -16 718 350 181 21 chr3 201248298 201248537 -16788621 + L2 LINE L2 1906 2105 -1167 327 324 66 28 chr3 201248537 201248719 -16788439 + MER5A DNA MER1_type 1 189 0 718 350 181 21 chr3 201248719 201249451 -16787707 + L2 LINE L2 2105 3031 -241 239 215 215 13 chr3 201249560 201249639 -16787519 + L2 LINE L2 3215 3309 -4 512 273 87 22 chr3 201249791 201249974 -16787184 - MIR SINE MIR -67 195 1 21 0 0 0 chr3 201250341 201250362 -16786796 + AT_rich Low_complexity Low_complexity 1 21 0 2199 110 7 0 chr3 201250367 201250658 -16786500 - AluSq SINE Alu -20 293 1 270 271 0 24 chr3 201251127 201251212 -16785946 + (TATATG)n Simple_repeat Simple_repeat 5 87 0 5392 248 57 13 chr3 201252333 201255218 -16781940 - L1MD1 LINE L1 0 6225 3206 573 341 151 27 chr3 201255249 201256026 -16781132 + L2 LINE L2 1895 2767 -547 1789 295 53 33 chr3 201256044 201256330 -16780828 - L1MD1 LINE L1 -5262 857 578 2994 52 0 0 chr3 201256330 201256679 -16780479 - L1PA6 LINE L1 -8 6146 5798 1789 295 53 33 chr3 201256679 201257171 -16779987 - L1MD1 LINE L1 -5541 578 64 386 286 64 18 chr3 201258103 201258274 -16778884 - L1ME LINE L1 -415 5706 5528 21 0 0 0 chr3 201258503 201258524 -16778634 + AT_rich Low_complexity Low_complexity 1 21 0 228 261 0 0 chr3 201258704 201258750 -16778408 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 231 152 0 0 chr3 201258750 201258796 -16778362 - L1MC4 LINE L1 -1339 6703 6658 2280 96 0 3 chr3 201258835 201259128 -16778030 - AluSg SINE Alu -18 292 1 1859 174 0 13 chr3 201259310 201259621 -16777537 + AluJo SINE Alu 1 307 -5 698 238 31 66 chr3 201259687 201259914 -16777244 - MIR SINE MIR -36 226 8 2469 67 0 3 chr3 201260238 201260537 -16776621 - AluY SINE Alu -13 298 1 237 267 89 0 chr3 201260832 201260922 -16776236 - MIR SINE MIR -54 208 111 42873 70 16 18 chr3 201262319 201263151 -16774007 - HUERS-P1 LTR ERV1 -558 5705 4873 2295 109 3 0 chr3 201263151 201263453 -16773705 - AluSp SINE Alu -10 303 1 42873 70 16 18 chr3 201263453 201264225 -16772933 - HUERS-P1 LTR ERV1 -1390 4873 4101 2549 46 3 0 chr3 201264225 201264527 -16772631 + AluY SINE Alu 1 303 -8 42873 70 16 18 chr3 201264527 201265105 -16772053 - HUERS-P1 LTR ERV1 -2162 4101 3523 1989 122 37 7 chr3 201265105 201265401 -16771757 + AluSx SINE Alu 1 305 -7 42873 70 16 18 chr3 201265401 201267057 -16770101 - HUERS-P1 LTR ERV1 -2740 3523 1866 207 0 0 0 chr3 201267057 201267080 -16770078 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 42873 70 16 18 chr3 201267080 201268953 -16768205 - HUERS-P1 LTR ERV1 -4397 1866 1 1154 70 14 0 chr3 201268953 201269095 -16768063 - LTR8 LTR ERV1 0 691 548 197 273 20 121 chr3 201270400 201270499 -16766659 + MIR SINE MIR 25 113 -149 192 346 48 19 chr3 201270540 201270563 -16766595 + L2 LINE L2 3202 3223 -90 2529 82 0 0 chr3 201270563 201270869 -16766289 - AluSg SINE Alu -4 306 1 192 346 48 19 chr3 201270869 201270949 -16766209 + L2 LINE L2 3223 3308 -5 2042 117 4 0 chr3 201271748 201272029 -16765129 - AluSx SINE Alu -8 304 23 248 267 13 27 chr3 201272145 201272220 -16764938 + L2 LINE L2 3184 3257 -15 246 288 0 0 chr3 201272757 201272816 -16764342 + (CCCTAG)n Simple_repeat Simple_repeat 6 64 0 189 0 0 0 chr3 201273186 201273207 -16763951 + (TCC)n Simple_repeat Simple_repeat 1 21 0 256 329 55 30 chr3 201274306 201274470 -16762688 - L2 LINE L2 -541 2773 2606 * 350 278 93 19 chr3 201274452 201274560 -16762598 + L2 LINE L2 3190 3305 -8 225 339 50 44 chr3 201274728 201274766 -16762392 + L2 LINE L2 2915 2951 -321 1070 83 0 6 chr3 201274766 201274922 -16762236 + (TTCC)n Simple_repeat Simple_repeat 1 155 0 225 339 50 44 chr3 201274922 201275063 -16762095 + L2 LINE L2 2951 3095 -177 401 197 107 25 chr3 201275070 201275192 -16761966 - MIR SINE MIR -2 260 129 737 238 77 0 chr3 201275214 201275395 -16761763 + MIR SINE MIR 66 260 -2 620 187 166 0 chr3 201275586 201275725 -16761433 - MIR SINE MIR -89 173 12 23 68 0 0 chr3 201275737 201275781 -16761377 + AT_rich Low_complexity Low_complexity 1 44 0 497 283 52 0 chr3 201276116 201276293 -16760865 - MIR SINE MIR -41 221 37 1331 170 91 57 chr3 201276536 201276837 -16760321 + L1ME2 LINE L1 5799 6088 -76 243 0 0 0 chr3 201276837 201276864 -16760294 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 1902 128 0 57 chr3 201276866 201277163 -16759995 - AluSx SINE Alu -32 280 1 1331 170 91 57 chr3 201277163 201277211 -16759947 + L1ME2 LINE L1 6088 6163 -1 21 0 0 0 chr3 201277197 201277218 -16759940 + AT_rich Low_complexity Low_complexity 1 21 0 * 2439 58 10 19 chr3 201277401 201277711 -16759447 - AluY SINE Alu -3 308 2 338 251 53 67 chr3 201278011 201278205 -16758953 + MIR SINE MIR 62 252 -10 421 276 182 6 chr3 201280174 201280355 -16756803 - MIR SINE MIR -30 232 20 213 276 138 49 chr3 201280383 201280657 -16756501 - L2 LINE L2 -210 3062 2765 182 279 109 48 chr3 201280967 201281114 -16756044 - L2 LINE L2 -574 2740 2585 2193 134 0 0 chr3 201281200 201281505 -16755653 - AluSp SINE Alu -7 306 2 367 208 35 64 chr3 201282034 201282207 -16754951 - L1ME4a LINE L1 0 6121 5954 22 0 0 0 chr3 201282676 201282698 -16754460 + AT_rich Low_complexity Low_complexity 1 22 0 228 229 110 0 chr3 201282700 201282809 -16754349 - L1ME4a LINE L1 -218 5903 5783 417 231 54 47 chr3 201282981 201283258 -16753900 - L1ME4a LINE L1 0 6121 5843 22 0 0 0 chr3 201283283 201283305 -16753853 + AT_rich Low_complexity Low_complexity 1 22 0 283 256 73 0 chr3 201283426 201283508 -16753650 - L1MC4a LINE L1 -1844 5964 5877 831 147 19 13 chr3 201283517 201283673 -16753485 - L1MC1 LINE L1 0 6333 6177 1233 102 20 0 chr3 201283955 201284152 -16753006 - L1MC1 LINE L1 -138 6195 5995 2300 84 0 0 chr3 201284183 201284491 -16752667 + AluY SINE Alu 1 308 0 1297 259 96 21 chr3 201284525 201285003 -16752155 - L1MC1 LINE L1 -1949 5859 5346 292 339 88 12 chr3 201285093 201285500 -16751658 - L1MC1 LINE L1 -922 5224 4787 839 275 64 26 chr3 201285504 201286156 -16751002 - L1MC4a LINE L1 -297 5824 4961 198 0 0 0 chr3 201286168 201286190 -16750968 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 369 0 0 0 chr3 201286237 201286278 -16750880 + (TG)n Simple_repeat Simple_repeat 2 42 0 543 283 71 16 chr3 201286452 201286636 -16750522 + MIR SINE MIR 53 246 -16 920 198 0 6 chr3 201286982 201287159 -16749999 + MER5B DNA MER1_type 3 178 0 2015 139 57 25 chr3 201287611 201287964 -16749194 + THE1B LTR MaLR 1 364 0 1563 230 88 31 chr3 201289468 201289738 -16747420 + MER20B DNA MER1_type 10 321 -462 1859 99 51 7 chr3 201289738 201290034 -16747124 - AluSx SINE Alu 0 308 1 1563 230 88 31 chr3 201290034 201290241 -16746917 + MER20B DNA MER1_type 321 515 -268 1108 214 20 17 chr3 201290332 201290627 -16746531 + MER20B DNA MER1_type 488 783 0 419 284 41 57 chr3 201290658 201290851 -16746307 - MIR SINE MIR -65 143 3 2318 90 7 0 chr3 201290927 201291227 -16745931 - AluSx SINE Alu -10 302 1 2479 77 0 0 chr3 201291687 201291997 -16745161 - AluY SINE Alu 0 311 2 2247 145 58 7 chr3 201292179 201292592 -16744566 - Tigger2a DNA MER2_type 0 434 1 1666 212 102 15 chr3 201292594 201293056 -16744102 - MLT1D LTR MaLR -2 503 2 307 299 82 0 chr3 201293562 201293659 -16743499 - MIR SINE MIR -2 260 156 2155 108 3 25 chr3 201293818 201294134 -16743024 - AluSx SINE Alu -3 309 1 226 315 22 22 chr3 201294526 201294618 -16742540 - MIR SINE MIR -119 143 52 728 186 8 0 chr3 201295715 201295839 -16741319 + FLAM_A SINE Alu 1 125 -8 1711 148 8 0 chr3 201297389 201297646 -16739512 - AluJo SINE Alu -12 300 42 245 298 115 0 chr3 201297726 201297830 -16739328 - MIR SINE MIR -71 191 76 2031 128 14 10 chr3 201298103 201298399 -16738759 + AluSx SINE Alu 1 297 -15 1037 162 29 34 chr3 201298804 201299008 -16738150 - MER3 DNA MER1_type -2 207 5 336 339 43 9 chr3 201299014 201299129 -16738029 + L2 LINE L2 3150 3268 -4 2083 113 3 0 chr3 201300607 201300922 -16736236 - AluSx SINE Alu 0 316 1 2853 225 94 22 chr3 201301215 201301682 -16735476 - L1ME3A LINE L1 0 6170 5738 2074 123 0 16 chr3 201301682 201301999 -16735159 - AluSx SINE Alu 0 312 1 2853 225 94 22 chr3 201301999 201302938 -16734220 - L1ME3A LINE L1 -432 5738 4626 252 0 0 0 chr3 201302938 201302966 -16734192 + (CA)n Simple_repeat Simple_repeat 1 28 0 497 329 51 29 chr3 201303343 201303659 -16733499 - L2 LINE L2 -1003 2311 1989 774 170 15 0 chr3 201303661 201303796 -16733362 + FRAM SINE Alu 1 132 -44 264 355 54 49 chr3 201304020 201304445 -16732713 + L2 LINE L2 2331 2757 -557 453 253 0 0 chr3 201304475 201304558 -16732600 - L2 LINE L2 -18 3254 3172 211 355 93 17 chr3 201304571 201304743 -16732415 + L2 LINE L2 2789 2973 -341 197 276 69 0 chr3 201305689 201305747 -16731411 + L3b LINE CR1 1119 1180 -403 264 363 140 46 chr3 201306106 201306519 -16730639 + L2 LINE L2 2812 3263 -9 1079 44 0 0 chr3 201306861 201306996 -16730162 + L1PA4 LINE L1 6021 6155 0 339 301 72 34 chr3 201307646 201307832 -16729326 - MIR SINE MIR -50 212 21 2486 82 0 0 chr3 201308187 201308492 -16728666 - AluY SINE Alu -6 305 1 336 224 280 7 chr3 201309487 201309630 -16727528 + MER5A DNA MER1_type 7 188 -1 625 193 57 21 chr3 201309758 201309898 -16727260 + MER6 DNA MER2_type -1 864 -1 251 303 61 58 chr3 201310259 201310441 -16726717 + MIR SINE MIR 24 204 -58 352 263 86 59 chr3 201310544 201310696 -16726462 - MIR SINE MIR -55 207 52 209 258 15 30 chr3 201311960 201312026 -16725132 + L3 LINE CR1 377 441 -1136 2236 96 0 34 chr3 201312902 201313225 -16723933 + AluSx SINE Alu 1 312 0 981 253 137 17 chr3 201313643 201314169 -16722989 - L1ME4a LINE L1 -13 6108 5520 191 178 111 22 chr3 201314205 201314250 -16722908 - L3b LINE CR1 -9 1574 1526 * 412 245 0 11 chr3 201314216 201314310 -16722848 - MIR3 SINE MIR -29 179 87 1026 17 0 0 chr3 201314579 201314695 -16722463 + AluY SINE Alu 192 307 -4 2329 107 10 0 chr3 201316622 201316931 -16720227 + AluSx SINE Alu 1 312 0 2313 84 17 3 chr3 201317960 201318259 -16718899 + AluSp SINE Alu 1 303 -10 358 234 20 153 chr3 201318406 201318654 -16718504 - MIR SINE MIR -19 243 29 227 352 67 9 chr3 201319916 201320021 -16717137 - L2 LINE L2 -30 3242 3132 1941 130 7 7 chr3 201320389 201320696 -16716462 - AluSx SINE Alu 0 307 1 2246 121 0 0 chr3 201321045 201321352 -16715806 - AluSx SINE Alu -5 307 1 208 296 42 14 chr3 201321360 201321431 -16715727 + L2 LINE L2 3241 3313 0 230 174 0 22 chr3 201323565 201323611 -16713547 + L2 LINE L2 3264 3308 -5 319 233 39 19 chr3 201324030 201324133 -16713025 - Charlie7 DNA MER1_type -2506 106 2 364 271 72 66 chr3 201325161 201325327 -16711831 - MER5A DNA MER1_type -16 173 7 930 309 92 21 chr3 201325623 201326301 -16710857 - L2 LINE L2 -6 3307 2581 720 210 6 6 chr3 201327904 201328061 -16709097 - L1ME2 LINE L1 -10 6154 5998 239 200 0 57 chr3 201328538 201328608 -16708550 + (TATATG)n Simple_repeat Simple_repeat 2 67 0 231 374 9 26 chr3 201328614 201328729 -16708429 - L2 LINE L2 -11 3302 3190 582 303 46 25 chr3 201328978 201329216 -16707942 + L2 LINE L2 2397 2639 -675 223 211 0 19 chr3 201329213 201329265 -16707893 + L2 LINE L2 2920 2970 -343 * 567 147 11 11 chr3 201329410 201329505 -16707653 - AluJ/FLAM SINE Alu -217 95 1 410 283 72 29 chr3 201329524 201329662 -16707496 + L2 LINE L2 3168 3311 -2 533 145 0 0 chr3 201329717 201329793 -16707365 + MER58A DNA MER1_type 2 77 -30 403 194 0 0 chr3 201330224 201330296 -16706862 - MER58 DNA MER1_type 0 2420 2349 204 223 234 21 chr3 201330297 201330391 -16706767 - MIR SINE MIR -134 128 15 8432 108 31 2 chr3 201330785 201332050 -16705108 - HSMAR2 DNA Mariner 0 1302 2 1100 119 18 0 chr3 201332675 201332843 -16704315 + FAM SINE Alu 1 171 -4 239 226 0 43 chr3 201332861 201332954 -16704204 + L1MC4 LINE L1 6614 6702 -1340 288 0 0 0 chr3 201332954 201332986 -16704172 + (CA)n Simple_repeat Simple_repeat 1 32 0 1754 82 4 4 chr3 201333310 201333542 -16703616 - AluY SINE Alu -16 295 64 4413 67 3 7 chr3 201383895 201384480 -16652678 - L1PA8A LINE L1 -1 6130 5548 1721 175 14 7 chr3 201384510 201384807 -16652351 + AluJb SINE Alu 1 299 -13 568 209 26 0 chr3 201385596 201385711 -16651447 - MER21B LTR ERV1 -75 788 671 2712 204 40 58 chr3 201385712 201386399 -16650759 - MER72 LTR ERV1 0 722 48 4494 148 15 28 chr3 201386399 201387192 -16649966 - LTR39 LTR ERV1 0 783 1 2712 204 40 58 chr3 201387192 201387239 -16649919 - MER72 LTR ERV1 -674 48 2 2941 205 21 24 chr3 201387240 201387870 -16649288 - MER21B LTR ERV1 -190 673 46 3944 182 40 49 chr3 201388040 201389003 -16648155 + LTR13 LTR ERVK 1 954 0 202 340 107 6 chr3 201390145 201390304 -16646854 - L2 LINE L2 -27 3286 3112 555 235 43 34 chr3 201390903 201391137 -16646021 - MER34B LTR ERV1 -3 562 327 410 288 51 49 chr3 201391478 201391867 -16645291 - L1M4 LINE L1 -1449 4697 4308 545 274 92 28 chr3 201391938 201392255 -16644903 - L1M4 LINE L1 -1944 4202 3866 23 0 0 0 chr3 201392424 201392447 -16644711 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr3 201392588 201392618 -16644540 + AT_rich Low_complexity Low_complexity 1 30 0 1755 185 48 0 chr3 201393153 201393509 -16643649 - L1M3 LINE L1 -389 5794 5422 395 283 96 62 chr3 201393915 201394268 -16642890 - L2 LINE L2 -475 2839 2475 1943 183 69 15 chr3 201394341 201394745 -16642413 - MSTB LTR MaLR 0 426 1 1691 176 21 0 chr3 201395327 201395617 -16641541 - AluJb SINE Alu -16 296 1 23 0 0 0 chr3 201395881 201395904 -16641254 + AT_rich Low_complexity Low_complexity 1 23 0 2280 93 3 17 chr3 201395909 201396210 -16640948 + AluSx SINE Alu 1 297 -15 4326 157 31 17 chr3 201396213 201397079 -16640079 - L1MB3 LINE L1 -7 6176 5299 2234 101 0 10 chr3 201397470 201397768 -16639390 - AluSg SINE Alu -15 295 1 2267 107 7 0 chr3 201397779 201398079 -16639079 - AluSx SINE Alu -10 302 1 2084 109 3 13 chr3 201398251 201398562 -16638596 - AluSx SINE Alu -4 308 1 349 286 32 11 chr3 201399417 201399533 -16637625 + MIR SINE MIR 2 122 -86 6569 164 72 84 chr3 201399534 201400083 -16637075 + LTR49-int LTR ERV1 4041 4595 -1736 3791 33 0 4 chr3 201400083 201400537 -16636621 + L1PA5 LINE L1 5703 6154 0 6569 164 72 84 chr3 201400537 201402031 -16635127 + LTR49-int LTR ERV1 4595 6059 -272 1353 76 6 0 chr3 201402147 201402318 -16634840 - AluSp SINE Alu -141 172 1 22 0 0 0 chr3 201402622 201402644 -16634514 + AT_rich Low_complexity Low_complexity 1 22 0 387 308 77 43 chr3 201402857 201403065 -16634093 - MIR SINE MIR -42 220 6 23 0 0 0 chr3 201403108 201403131 -16634027 + AT_rich Low_complexity Low_complexity 1 23 0 270 400 73 30 chr3 201403807 201404176 -16632982 - L2 LINE L2 -164 3108 2721 828 173 6 6 chr3 201404502 201404658 -16632500 - L1MC2 LINE L1 -29 6315 6160 582 352 101 28 chr3 201405057 201405699 -16631459 - L2 LINE L2 -556 2758 2070 1416 119 5 5 chr3 201406145 201406338 -16630820 + AluSp SINE Alu 1 193 -120 373 125 16 0 chr3 201406449 201406513 -16630645 + AluSp/q SINE Alu 232 296 -7 1076 172 6 0 chr3 201406905 201407079 -16630079 + MER5B DNA MER1_type 4 178 0 275 212 34 110 chr3 201407562 201407708 -16629450 - HAL1b LINE L1 -8 1340 1206 7884 160 18 15 chr3 201407838 201410332 -16626826 - L1MA4 LINE L1 -5 6295 3787 307 239 28 0 chr3 201410337 201410408 -16626750 - Tigger2 DNA MER2_type 0 2718 2646 428 181 11 0 chr3 201410408 201410502 -16626656 - L1PA16 LINE L1 -151 6015 5921 521 228 107 15 chr3 201410585 201410791 -16626367 - HAL1b LINE L1 -494 854 630 357 62 0 0 chr3 201410881 201410929 -16626229 - L1P LINE L1 -2458 3688 3641 * 4903 154 27 12 chr3 201410928 201412154 -16625004 - L1PA16 LINE L1 -49 6768 5522 7723 215 25 48 chr3 201412177 201412826 -16624332 - L1PA16 LINE L1 -2340 4457 3795 1593 165 72 17 chr3 201412826 201413117 -16624041 - AluJb SINE Alu -5 307 1 7723 215 25 48 chr3 201413117 201415750 -16621408 - L1PA16 LINE L1 -3002 3795 1264 2432 74 0 7 chr3 201415845 201416154 -16621004 - AluSq SINE Alu -6 307 1 467 251 103 11 chr3 201416213 201416388 -16620770 + MIR SINE MIR 72 262 0 445 275 198 24 chr3 201419026 201419233 -16617925 + MIR SINE MIR 2 244 -18 297 268 127 7 chr3 201419396 201419538 -16617620 + L1ME4a LINE L1 5512 5670 -451 21 57 0 0 chr3 201419755 201419790 -16617368 + AT_rich Low_complexity Low_complexity 1 35 0 257 213 46 37 chr3 201419849 201419957 -16617201 + L1ME4a LINE L1 5964 6072 -49 599 195 0 32 chr3 201420817 201420940 -16616218 + FLAM_C SINE Alu 2 120 -23 1546 147 24 12 chr3 201421065 201421317 -16615841 + AluSx SINE Alu 30 284 -28 290 65 0 22 chr3 201421323 201421369 -16615789 + (CAA)n Simple_repeat Simple_repeat 2 46 0 1703 187 32 0 chr3 201421935 201422218 -16614940 - AluJb SINE Alu -18 294 3 644 213 154 5 chr3 201422424 201422612 -16614546 + LTR49-int LTR ERV1 5077 5292 -1039 2189 119 72 17 chr3 201423356 201423701 -16613457 + THE1B LTR MaLR 1 364 0 1082 149 90 11 chr3 201423969 201424157 -16613001 - AluJo SINE Alu -13 299 97 301 314 141 11 chr3 201424265 201424456 -16612702 + L2 LINE L2 2923 3138 -175 828 242 92 25 chr3 201424478 201424759 -16612399 + L2 LINE L2 3011 3310 -3 180 291 0 0 chr3 201424771 201424826 -16612332 + L2 LINE L2 1423 1477 -1837 905 218 107 5 chr3 201424837 201425053 -16612105 - MIR SINE MIR -21 241 4 212 365 56 9 chr3 201425053 201425123 -16612035 + L2 LINE L2 1506 1580 -1734 400 235 88 22 chr3 201425131 201425267 -16611891 + L2 LINE L2 2206 2350 -964 779 116 8 8 chr3 201425385 201425506 -16611652 - AluSq/x SINE Alu -191 121 1 644 294 101 11 chr3 201425535 201426102 -16611056 - L1MC4a LINE L1 -738 5413 5209 288 0 0 0 chr3 201426168 201426200 -16610958 + (TG)n Simple_repeat Simple_repeat 2 33 0 950 156 247 9 chr3 201426678 201426909 -16610249 - AluY SINE Alu -23 288 3 322 264 13 39 chr3 201427402 201427557 -16609601 + CT-rich Low_complexity Low_complexity 4 154 0 1218 127 0 0 chr3 201428169 201428334 -16608824 - AluSg/x SINE Alu -14 296 132 2455 84 0 3 chr3 201428334 201428644 -16608514 - AluSq SINE Alu -4 309 1 2407 74 10 7 chr3 201429881 201430191 -16606967 - AluY SINE Alu 0 311 1 381 235 25 12 chr3 201430342 201430423 -16606735 - L2 LINE L2 -38 3234 3153 3124 215 36 33 chr3 201430473 201431193 -16605965 - MER21B LTR ERV1 -141 722 1 406 230 8 24 chr3 201431472 201431598 -16605560 - L1MC4a LINE L1 -2096 4050 3927 5873 145 26 46 chr3 201431742 201432433 -16604725 - L1PB2 LINE L1 -1 6150 5446 10640 58 21 15 chr3 201432433 201433808 -16603350 - SVA Other Other -3 1383 1 5873 145 26 46 chr3 201433808 201435260 -16601898 - L1PB2 LINE L1 -705 5446 4060 24 53 0 0 chr3 201437303 201437341 -16599817 + AT_rich Low_complexity Low_complexity 1 38 0 1018 297 77 46 chr3 201437583 201438115 -16599043 - L2 LINE L2 0 3313 2776 330 246 34 145 chr3 201438545 201438752 -16598406 + L1ME4a LINE L1 5373 5556 -2252 471 158 12 0 chr3 201438753 201438835 -16598323 - MER46C DNA MER2_type -1 337 255 4413 234 25 37 chr3 201438892 201439985 -16597173 + L1MEc LINE L1 107 1186 -5210 1738 181 16 7 chr3 201439985 201440288 -16596870 + AluJb SINE Alu 1 306 -6 4413 234 25 37 chr3 201440288 201440414 -16596744 + L1MEc LINE L1 1186 1312 -5084 865 293 76 60 chr3 201440410 201441463 -16595695 + L1ME LINE L1 304 1373 -4999 * 266 169 52 6 chr3 201441471 201441643 -16595515 + (TA)n Simple_repeat Simple_repeat 1 180 0 521 308 99 28 chr3 201441660 201441982 -16595176 + L1ME LINE L1 1250 1594 -4790 3389 109 15 56 chr3 201442022 201442555 -16594603 - MER9 LTR ERVK 0 511 1 43829 82 7 6 chr3 201442555 201448559 -16588599 - HERVK9 LTR ERVK 0 8033 1 3495 119 32 4 chr3 201448559 201448616 -16588542 - MER9 LTR ERVK 0 511 457 189 0 0 0 chr3 201448616 201448637 -16588521 + (CA)n Simple_repeat Simple_repeat 2 22 0 3495 119 32 4 chr3 201448637 201449076 -16588082 - MER9 LTR ERVK -54 457 1 626 195 7 54 chr3 201449122 201449271 -16587887 - MER46C DNA MER2_type -194 144 3 369 209 54 88 chr3 201449432 201449580 -16587578 + L1ME4a LINE L1 5725 5867 -254 359 270 74 0 chr3 201449583 201449731 -16587427 + L1ME4a LINE L1 5960 6118 -3 1546 207 13 10 chr3 201449738 201450037 -16587121 - AluJb SINE Alu -12 300 1 2183 117 3 3 chr3 201450059 201450357 -16586801 + AluSx SINE Alu 1 298 -14 2785 101 16 0 chr3 201451242 201451607 -16585551 + THE1C LTR MaLR 1 371 -4 1275 249 51 46 chr3 201451647 201452258 -16584900 - L1MEc LINE L1 -2583 3563 2950 636 207 99 80 chr3 201452240 201452554 -16584604 - L1ME2 LINE L1 0 6164 5845 * 750 239 91 19 chr3 201452543 201452683 -16584475 - L1MEc LINE L1 -3656 2490 2361 1409 132 151 18 chr3 201452683 201452955 -16584203 + AluYa5 SINE Alu 1 308 -3 750 239 91 19 chr3 201452955 201453129 -16584029 - L1MEc LINE L1 -3785 2361 2177 2384 101 3 0 chr3 201453988 201454296 -16582862 + AluSq SINE Alu 1 309 -4 486 283 119 32 chr3 201455057 201455276 -16581882 + MIR SINE MIR 7 244 -18 188 333 56 14 chr3 201455279 201455351 -16581807 - MIR3 SINE MIR -130 78 4 1364 188 175 0 chr3 201455380 201455672 -16581486 - MER2 DNA MER2_type -1 343 1 2253 102 3 0 chr3 201455674 201455967 -16581191 - AluSg SINE Alu -7 303 10 2254 108 0 10 chr3 201455969 201456276 -16580882 - AluSc SINE Alu -5 304 1 2746 39 0 0 chr3 201456500 201456809 -16580349 - AluY SINE Alu -2 309 1 190 336 36 45 chr3 201457537 201457647 -16579511 - L2 LINE L2 -195 3077 2969 234 364 24 48 chr3 201457762 201457927 -16579231 - L2 LINE L2 -624 2690 2530 315 261 123 51 chr3 201458033 201458171 -16578987 + L2 LINE L2 3164 3311 -2 2110 118 10 7 chr3 201458835 201459131 -16578027 - AluSx SINE Alu -15 297 1 220 283 160 19 chr3 201459833 201459939 -16577219 - L2 LINE L2 -5 3308 3188 1061 154 18 12 chr3 201460040 201460209 -16576949 - AluJo SINE Alu -24 288 119 252 0 0 0 chr3 201460331 201460359 -16576799 + (T)n Simple_repeat Simple_repeat 1 28 0 405 379 152 0 chr3 201460850 201461127 -16576031 + L3 LINE CR1 1258 1576 -1 2297 108 0 0 chr3 201461149 201461445 -16575713 + AluSx SINE Alu 1 296 -16 1467 226 32 26 chr3 201461528 201461905 -16575253 - MER92B LTR ERV1 -8 628 250 5300 158 29 25 chr3 201461925 201461936 -16575222 - L1MC2 LINE L1 -9 6335 6326 2400 67 0 7 chr3 201461936 201462233 -16574925 - AluY SINE Alu -16 295 1 5300 158 29 25 chr3 201462233 201463200 -16573958 - L1MC2 LINE L1 -18 6326 5353 1643 141 40 0 chr3 201463192 201463593 -16573565 - L1PA16 LINE L1 -4 6162 5709 * 1376 155 22 15 chr3 201463587 201463876 -16573282 - L1PA16 LINE L1 -691 5475 5189 * 340 88 0 29 chr3 201463876 201463944 -16573214 + (TTG)n Simple_repeat Simple_repeat 1 66 0 1376 155 22 15 chr3 201463944 201464065 -16573093 - L1PA16 LINE L1 -977 5189 5070 * 8006 199 13 17 chr3 201464061 201465805 -16571353 + L1 LINE L1 3183 4919 -1227 4575 245 76 45 chr3 201466151 201468416 -16568742 - L1M4c LINE L1 -4437 2701 218 1291 144 10 0 chr3 201468534 201468728 -16568430 - MSTB1 LTR MaLR 0 432 237 520 178 54 99 chr3 201468728 201468921 -16568237 - LTR45B LTR ERV1 0 489 324 1329 147 21 13 chr3 201469265 201469503 -16567655 - MSTB1 LTR MaLR -192 240 1 457 300 260 24 chr3 201469527 201470031 -16567127 - L3 LINE CR1 -70 1507 885 222 262 75 93 chr3 201470136 201470186 -16566972 - L3 LINE CR1 -907 670 621 2320 96 0 7 chr3 201470186 201470488 -16566670 + AluSq SINE Alu 1 300 -13 222 262 75 93 chr3 201470488 201470544 -16566614 - L3 LINE CR1 -956 621 566 21 0 0 0 chr3 201472051 201472072 -16565086 + AT_rich Low_complexity Low_complexity 1 21 0 215 295 181 0 chr3 201472487 201472592 -16564566 + MIR SINE MIR 65 188 -74 2368 101 0 0 chr3 201473173 201473471 -16563687 + AluSq SINE Alu 1 298 -15 786 259 28 19 chr3 201473529 201473745 -16563413 + MIR SINE MIR 31 248 -14 2164 121 14 0 chr3 201474754 201475051 -16562107 + AluSx SINE Alu 1 301 -11 316 311 78 10 chr3 201475767 201475870 -16561288 - MIR SINE MIR -80 128 19 446 295 209 0 chr3 201475911 201476122 -16561036 - MIR SINE MIR 0 262 17 231 289 154 0 chr3 201476196 201476300 -16560858 - L2 LINE L2 -1 3271 3152 493 339 17 46 chr3 201476518 201476757 -16560401 - MIR SINE MIR -19 243 12 515 348 76 13 chr3 201476886 201477110 -16560048 - MIR SINE MIR 0 262 25 392 195 259 29 chr3 201478197 201478371 -16558787 - MLT1J LTR MaLR -11 500 287 * 451 262 77 18 chr3 201478369 201478537 -16558621 - MLT1J LTR MaLR -332 179 2 211 362 126 5 chr3 201478737 201478936 -16558222 + L2 LINE L2 2563 2785 -529 25 0 0 0 chr3 201479384 201479409 -16557749 + AT_rich Low_complexity Low_complexity 1 25 0 189 205 90 13 chr3 201479816 201479894 -16557264 + MIR SINE MIR 21 104 -158 350 266 37 46 chr3 201480915 201481024 -16556134 - MIR3 SINE MIR -50 158 51 2326 101 0 0 chr3 201482275 201482571 -16554587 - AluSq SINE Alu -17 296 1 211 286 71 0 chr3 201482604 201482674 -16554484 + MIR SINE MIR 58 132 -130 357 256 43 8 chr3 201482912 201483029 -16554129 - MIR SINE MIR -117 145 25 14290 162 54 35 chr3 201483173 201483301 -16553857 + L1MA5A LINE L1 2038 2162 -4371 2236 92 0 20 chr3 201483301 201483594 -16553564 + AluSg SINE Alu 1 287 -23 14290 162 54 35 chr3 201483594 201484807 -16552351 + L1MA5A LINE L1 2162 3350 -3183 1791 140 13 33 chr3 201484807 201485107 -16552051 - AluJo SINE Alu -18 294 1 14290 162 54 35 chr3 201485107 201485647 -16551511 + L1MA5A LINE L1 3350 3878 -2655 2087 128 7 0 chr3 201485647 201485953 -16551205 + AluSx SINE Alu 1 308 0 14290 162 54 35 chr3 201485953 201486693 -16550465 + L1MA5A LINE L1 3878 4602 -1931 1717 195 3 0 chr3 201486693 201487000 -16550158 + AluJb SINE Alu 1 308 -4 14290 162 54 35 chr3 201487000 201487779 -16549379 + L1MA5A LINE L1 4602 5364 -1169 1839 159 30 10 chr3 201487779 201488081 -16549077 + AluJb SINE Alu 1 308 -4 14290 162 54 35 chr3 201488081 201489042 -16548116 + L1MA5A LINE L1 5364 6305 -228 2017 117 177 14 chr3 201489042 201489410 -16547748 + MSTA LTR MaLR 1 428 0 9871 116 41 28 chr3 201489412 201490969 -16546189 + MSTA-int LTR MaLR 3 1580 0 1852 122 202 17 chr3 201490969 201491330 -16545828 + MSTA LTR MaLR 1 428 0 14290 162 54 35 chr3 201491330 201491367 -16545791 + L1MA5A LINE L1 6304 6526 -7 364 192 19 10 chr3 201491429 201491533 -16545625 + CT-rich Low_complexity Low_complexity 4 108 0 1340 209 111 22 chr3 201491535 201491850 -16545308 + MLT1F LTR MaLR 192 534 -8 3609 141 41 25 chr3 201491878 201492220 -16544938 + L1M2 LINE L1 4697 5032 -1259 1966 153 0 10 chr3 201492220 201492515 -16544643 + AluJb SINE Alu 1 292 -20 3609 141 41 25 chr3 201492515 201493146 -16544012 + L1M2 LINE L1 5032 5675 -616 245 113 94 0 chr3 201493251 201493304 -16543854 - AluS SINE Alu -250 58 1 1075 231 145 18 chr3 201493304 201493641 -16543517 - L1M3d LINE L1 -4837 1054 675 1738 173 97 13 chr3 201493660 201494260 -16542898 - L1M4 LINE L1 -602 5576 4935 3670 105 2 10 chr3 201494260 201494775 -16542383 - MER9 LTR ERVK 0 511 1 18655 73 6 5 chr3 201494776 201497468 -16539690 - HERVK9 LTR ERVK -1 8033 3317 13111 55 1 1 chr3 201497463 201499031 -16538127 - HERVK9 LTR ERVK -3236 2680 1114 * 4515 66 12 4 chr3 201499033 201499596 -16537562 - HERVK9 LTR ERVK -5348 568 1 3736 100 4 4 chr3 201499596 201500107 -16537051 - MER9 LTR ERVK 0 511 1 663 229 55 5 chr3 201500138 201500339 -16536819 - L1MEc LINE L1 -5426 970 760 5093 85 15 1 chr3 201500342 201501026 -16536132 - L1PA13 LINE L1 -19 6144 5452 1052 149 17 0 chr3 201501059 201501234 -16535924 - MER61E LTR ERV1 -51 518 341 230 200 12 113 chr3 201501253 201501333 -16535825 - LTR25 LTR ERV1 -559 235 164 469 224 30 45 chr3 201501410 201501544 -16535614 - LTR25 LTR ERV1 -431 363 232 19276 172 28 8 chr3 201501654 201502058 -16535100 - L1P4 LINE L1 -706 5455 5061 2235 103 0 10 chr3 201502058 201502350 -16534808 - AluSx SINE Alu -23 289 1 19276 172 28 8 chr3 201502350 201503468 -16533690 - L1P4 LINE L1 -1100 5061 3967 2282 125 100 8 chr3 201503468 201503859 -16533299 + MSTA LTR MaLR 1 427 -1 19276 172 28 8 chr3 201503859 201506190 -16530968 - L1P4 LINE L1 -2194 3967 1529 1145 224 78 30 chr3 201506268 201506599 -16530559 - MLT2D LTR ERVL 0 414 68 240 191 0 48 chr3 201508190 201508253 -16528905 - LTR41 LTR ERVL -14 759 700 340 265 136 7 chr3 201508680 201508827 -16528331 - LTR41 LTR ERVL -607 166 1 2394 80 3 3 chr3 201509275 201509574 -16527584 + AluSc SINE Alu 1 299 -10 972 196 139 57 chr3 201510820 201510933 -16526225 - MER2 DNA MER2_type -1 343 241 2166 123 10 0 chr3 201510933 201511233 -16525925 + AluSx SINE Alu 1 303 -9 972 196 139 57 chr3 201511233 201511436 -16525722 - MER2 DNA MER2_type -103 241 1 332 132 19 0 chr3 201512226 201512279 -16524879 + Tigger4(Zombi) DNA MER2_type 2678 2731 0 2356 107 0 0 chr3 201512295 201512595 -16524563 - AluSc SINE Alu -9 300 1 523 184 28 9 chr3 201512711 201512820 -16524338 + L2 LINE L2 3191 3301 -12 1024 76 15 0 chr3 201513210 201513341 -16523817 + AluSx SINE Alu 1 133 -180 390 225 11 0 chr3 201513346 201513435 -16523723 + L1MC4 LINE L1 6614 6703 -1339 1181 138 0 0 chr3 201513456 201513623 -16523535 + AluSx SINE Alu 135 301 -11 245 238 22 25 chr3 201513630 201513706 -16523452 - MIR SINE MIR -133 75 2 21 57 0 0 chr3 201514671 201514706 -16522452 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr3 201515640 201515664 -16521494 + AT_rich Low_complexity Low_complexity 1 24 0 787 212 199 0 chr3 201515802 201516028 -16521130 + L1MC4a LINE L1 6712 6982 -826 216 67 0 0 chr3 201516028 201516058 -16521100 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 1167 157 115 107 chr3 201516389 201516745 -16520413 + L1MC4a LINE L1 7031 7389 -419 926 208 41 18 chr3 201516751 201516972 -16520186 - L1MD1 LINE L1 -1 6241 6016 253 194 60 45 chr3 201516970 201517037 -16520121 - L1MD1 LINE L1 -853 5313 5259 * 2254 98 7 0 chr3 201517096 201517393 -16519765 + AluSp SINE Alu 1 299 -14 2944 143 51 4 chr3 201517476 201518009 -16519149 - L1MB3 LINE L1 -7 6176 5619 1567 168 91 28 chr3 201518641 201518993 -16518165 - MLT1A2 LTR MaLR 0 374 1 558 218 78 21 chr3 201520218 201520360 -16516798 + MER20 DNA MER1_type 70 219 0 1837 109 97 0 chr3 201521114 201521381 -16515777 - AluSx SINE Alu -19 293 1 2119 99 10 10 chr3 201523880 201524172 -16512986 - AluSc SINE Alu -17 292 1 2509 75 0 0 chr3 201526003 201526308 -16510850 - AluY SINE Alu -6 305 1 475 239 54 30 chr3 201527849 201528016 -16509142 - MIR SINE MIR -76 186 16 204 224 106 47 chr3 201529335 201529420 -16507738 - MIR SINE MIR -160 102 13 2383 99 0 0 chr3 201529689 201529993 -16507165 - AluSg SINE Alu -2 308 5 2187 106 7 13 chr3 201531038 201531341 -16505817 + AluSc SINE Alu 1 301 -8 1617 181 20 17 chr3 201531511 201531810 -16505348 + AluJb SINE Alu 1 300 -12 2329 103 0 0 chr3 201532545 201532846 -16504312 + AluSg SINE Alu 5 305 -5 675 296 208 0 chr3 201532907 201533336 -16503822 + L1ME3A LINE L1 5651 6168 -2 222 179 63 116 chr3 201533358 201533453 -16503705 - L2 LINE L2 -21 3251 3162 310 247 45 0 chr3 201535068 201535157 -16502001 + L2 LINE L2 3203 3295 -18 1375 177 30 120 chr3 201536529 201536574 -16500584 - MLT1A1 LTR MaLR 0 365 318 2153 98 0 0 chr3 201536574 201536850 -16500308 + AluSx SINE Alu 1 276 -36 1375 177 30 120 chr3 201536850 201537205 -16499953 - MLT1A1 LTR MaLR -47 318 1 1896 114 75 0 chr3 201537298 201537578 -16499580 + AluSx SINE Alu 1 301 -11 3553 158 30 74 chr3 201538070 201538830 -16498328 + LTR8A LTR ERV1 1 727 0 1411 143 43 0 chr3 201538848 201539078 -16498080 - MSTA LTR MaLR 0 428 189 1017 171 0 12 chr3 201539078 201539248 -16497910 - AluSg/x SINE Alu -11 299 132 2011 117 31 0 chr3 201539248 201539539 -16497619 - AluSx SINE Alu -12 300 1 935 134 35 0 chr3 201539540 201539771 -16497387 - MSTA LTR MaLR -229 199 1 5027 149 48 18 chr3 201540558 201540998 -16496160 - L1MA8 LINE L1 0 6291 5866 2069 94 0 4 chr3 201540998 201541275 -16495883 - AluY SINE Alu -1 310 35 5027 149 48 18 chr3 201541275 201541778 -16495380 - L1MA8 LINE L1 -425 5866 5320 237 342 35 26 chr3 201543047 201543161 -16493997 + MIR SINE MIR 32 146 -62 495 331 0 0 chr3 201543271 201543392 -16493766 - L2 LINE L2 -10 3262 3142 6578 203 48 28 chr3 201543563 201543642 -16493516 + L1MC2 LINE L1 3544 3620 -2724 2352 69 7 10 chr3 201543642 201543945 -16493213 - AluY SINE Alu -9 302 1 6578 203 48 28 chr3 201543945 201544169 -16492989 + L1MC2 LINE L1 3620 3838 -2506 799 137 23 8 chr3 201544169 201544300 -16492858 + FLAM_C SINE Alu 1 133 0 6578 203 48 28 chr3 201544300 201546321 -16490837 + L1MC2 LINE L1 3838 5973 -371 1817 168 3 0 chr3 201546322 201546613 -16490545 + AluSx SINE Alu 5 296 -16 1052 207 56 18 chr3 201546785 201547070 -16490088 + L1M3de LINE L1 1518 1813 -4840 2132 109 10 7 chr3 201547070 201547363 -16489795 + AluSx SINE Alu 1 294 -18 970 85 31 8 chr3 201548224 201548353 -16488805 + AluY SINE Alu 1 132 -179 2180 103 3 20 chr3 201548979 201549281 -16487877 + AluSp SINE Alu 1 297 -16 310 248 193 28 chr3 201549734 201549879 -16487279 - MIR3 SINE MIR -1 207 39 356 262 98 92 chr3 201549974 201550082 -16487076 + MIR3 SINE MIR 37 148 -60 630 270 0 54 chr3 201550082 201550267 -16486891 - MER5B DNA MER1_type 0 178 4 356 262 98 92 chr3 201550267 201550322 -16486836 + MIR3 SINE MIR 148 201 -7 1550 191 74 34 chr3 201550728 201551079 -16486079 - MLT1A1 LTR MaLR 0 365 1 1153 171 78 10 chr3 201551506 201551711 -16485447 - MER20 DNA MER1_type 0 219 1 262 233 67 0 chr3 201551780 201551840 -16485318 - MIR3 SINE MIR -1 207 144 2458 53 0 10 chr3 201551843 201552142 -16485016 - AluY SINE Alu -15 296 1 357 24 0 0 chr3 201552471 201552513 -16484645 + (CA)n Simple_repeat Simple_repeat 1 42 0 240 35 0 0 chr3 201552512 201552541 -16484617 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 542 290 65 50 chr3 201552642 201552904 -16484254 + L2 LINE L2 2648 2913 -401 451 273 151 40 chr3 201552975 201553253 -16483905 + L2 LINE L2 3005 3313 0 534 311 74 67 chr3 201553307 201553590 -16483568 + L2 LINE L2 2974 3258 -14 570 128 17 60 chr3 201554315 201554432 -16482726 + L1MA9 LINE L1 6019 6130 -182 1051 79 0 0 chr3 201554432 201554559 -16482599 + AluSc SINE Alu 1 127 -182 2362 94 7 3 chr3 201554805 201555113 -16482045 + AluSc SINE Alu 1 309 0 646 285 71 100 chr3 201555300 201555488 -16481670 - L2 LINE L2 0 3313 3121 6213 83 39 11 chr3 201555488 201556426 -16480732 + L1PB1 LINE L1 5190 6151 0 646 285 71 100 chr3 201556426 201556757 -16480401 - L2 LINE L2 -192 3121 2809 1015 226 22 47 chr3 201556764 201556879 -16480279 + L1ME1 LINE L1 2171 2287 -3859 2394 84 0 0 chr3 201556879 201557178 -16479980 + AluY SINE Alu 1 299 -12 1015 226 22 47 chr3 201557178 201557381 -16479777 + L1ME1 LINE L1 2287 2481 -3665 294 143 0 0 chr3 201557383 201557425 -16479733 - MER2 DNA MER2_type -3 342 301 5930 157 40 40 chr3 201557426 201557935 -16479223 + Ricksha_b DNA DNA 1 509 -2345 2258 86 0 70 chr3 201557935 201558262 -16478896 + AluSx SINE Alu 1 304 -8 5930 157 40 40 chr3 201558262 201558569 -16478589 + Ricksha_b DNA DNA 509 815 -2039 805 195 0 0 chr3 201558569 201558697 -16478461 - FLAM_A SINE Alu -2 131 4 5930 157 40 40 chr3 201558697 201559016 -16478142 + Ricksha_b DNA DNA 815 1245 -9 1965 139 20 3 chr3 201559025 201559328 -16477830 - MER2 DNA MER2_type -37 308 1 862 220 124 0 chr3 201559348 201559557 -16477601 + L1ME1 LINE L1 4561 4795 -1351 2573 211 74 38 chr3 201559598 201560159 -16476999 + L1ME1 LINE L1 4993 5339 -827 2240 81 3 3 chr3 201560159 201560497 -16476661 + AluSp SINE Alu 1 338 0 2573 211 74 38 chr3 201560497 201561117 -16476041 + L1ME1 LINE L1 5339 5935 -231 331 125 78 16 chr3 201561766 201561830 -16475328 - MER45 DNA AcHobo -1 1580 1513 2212 116 0 13 chr3 201562490 201562801 -16474357 - AluSx SINE Alu -5 307 1 2191 103 13 0 chr3 201563308 201563610 -16473548 + AluSx SINE Alu 1 306 -6 25 0 0 0 chr3 201564096 201564121 -16473037 + AT_rich Low_complexity Low_complexity 1 25 0 4014 127 91 5 chr3 201564176 201564805 -16472353 - L1PA16 LINE L1 -12 6154 5472 2094 72 0 15 chr3 201565230 201565494 -16471664 + AluY SINE Alu 1 260 -51 4018 174 28 7 chr3 201565517 201566262 -16470896 - L1MB7 LINE L1 -16 6168 5408 749 266 95 92 chr3 201566624 201568138 -16469020 + L1MEd LINE L1 1 1570 -4740 * 1864 204 35 12 chr3 201568117 201568520 -16468638 + L1MC/D LINE L1 5355 5766 -2025 1866 129 20 20 chr3 201568522 201568825 -16468333 + AluSx SINE Alu 1 303 -9 1970 140 0 7 chr3 201568887 201569172 -16467986 + AluJo SINE Alu 20 302 -10 3328 181 277 37 chr3 201569349 201570397 -16466761 + L1MD1 LINE L1 3 1301 -5239 982 104 0 49 chr3 201570400 201570544 -16466614 + AluSq/x SINE Alu 1 137 -176 2060 114 42 0 chr3 201570544 201570851 -16466307 + L1MA4A LINE L1 5979 6298 -5 5062 239 58 24 chr3 201570866 201571367 -16465791 + L1MD1 LINE L1 2358 2840 -3700 1959 97 13 60 chr3 201571367 201571503 -16465655 + AluSx SINE Alu 1 142 -183 2215 42 14 21 chr3 201571503 201571811 -16465347 + AluY SINE Alu 1 306 0 1959 97 13 60 chr3 201571811 201572012 -16465146 + AluSx SINE Alu 142 325 0 5062 239 58 24 chr3 201572012 201572079 -16465079 + L1MD1 LINE L1 2840 2903 -3637 2144 116 84 32 chr3 201572079 201572425 -16464733 + THE1B LTR MaLR 1 364 0 5062 239 58 24 chr3 201572425 201573878 -16463280 + L1MD1 LINE L1 2903 4446 -2094 1891 128 24 24 chr3 201573879 201574167 -16462991 + AluJo SINE Alu 1 288 -24 359 174 9 28 chr3 201574167 201574276 -16462882 + GA-rich Low_complexity Low_complexity 1 107 0 2339 88 7 0 chr3 201574332 201574628 -16462530 + AluSx SINE Alu 1 298 -14 3795 150 69 61 chr3 201574645 201575094 -16462064 + L1MD1 LINE L1 5129 5573 -1063 867 182 245 5 chr3 201575094 201575286 -16461872 + MER8 DNA MER2_type 1 238 -1 3795 150 69 61 chr3 201575286 201575573 -16461585 + L1MD1 LINE L1 5573 5856 -780 1863 192 13 40 chr3 201575573 201575730 -16461428 + MLT1A1 LTR MaLR 1 161 -204 2113 97 6 61 chr3 201575730 201576059 -16461099 + AluSx SINE Alu 1 311 -1 1863 192 13 40 chr3 201576059 201576276 -16460882 + MLT1A1 LTR MaLR 161 365 0 3795 150 69 61 chr3 201576276 201576787 -16460371 + L1MD1 LINE L1 5856 6367 -269 315 0 0 0 chr3 201576863 201576898 -16460260 + (CA)n Simple_repeat Simple_repeat 2 36 0 2794 268 95 25 chr3 201576898 201577239 -16459919 + L1MC4 LINE L1 6703 7019 -1023 1339 165 109 4 chr3 201577239 201577505 -16459653 + AluJo SINE Alu 1 294 -18 2794 268 95 25 chr3 201577505 201578232 -16458926 + L1MC4 LINE L1 7019 7846 -196 180 220 60 20 chr3 201578493 201578543 -16458615 - MIR SINE MIR -118 144 93 270 0 0 0 chr3 201579043 201579073 -16458085 + (CA)n Simple_repeat Simple_repeat 2 31 0 413 243 107 7 chr3 201579274 201579414 -16457744 - MIR SINE MIR -82 180 27 255 116 0 174 chr3 201579504 201579530 -16457628 - MIR SINE MIR -48 214 206 2255 116 3 0 chr3 201579530 201579832 -16457326 - AluSx SINE Alu -9 303 1 255 116 0 174 chr3 201579832 201579874 -16457284 - MIR SINE MIR -56 206 158 277 198 363 11 chr3 201579875 201579966 -16457192 - FLAM_A SINE Alu -9 124 2 313 291 36 9 chr3 201579976 201580086 -16457072 - MIR SINE MIR -109 153 41 434 214 8 51 chr3 201580791 201580908 -16456250 + MIR SINE MIR 122 233 -29 2613 65 0 0 chr3 201581338 201581648 -16455510 - AluSp SINE Alu -2 311 2 202 339 31 15 chr3 201582434 201582564 -16454594 + L2 LINE L2 1919 2050 -1264 336 259 153 8 chr3 201582583 201582714 -16454444 + MIR SINE MIR 1 150 -112 858 313 62 39 chr3 201583007 201583575 -16453583 + L2 LINE L2 1989 2569 -745 2379 96 3 0 chr3 201584172 201584474 -16452684 + AluSq SINE Alu 1 303 -10 1686 325 60 51 chr3 201584823 201585972 -16451186 + L3 LINE CR1 96 1254 -323 404 355 29 0 chr3 201586126 201586298 -16450860 + L3 LINE CR1 1279 1455 -122 180 111 0 0 chr3 201587374 201587401 -16449757 + (A)n Simple_repeat Simple_repeat 1 27 0 220 157 59 0 chr3 201588101 201588152 -16449006 + (CG)n Simple_repeat Simple_repeat 2 55 0 188 147 29 29 chr3 201588826 201588894 -16448264 + (TG)n Simple_repeat Simple_repeat 1 68 0 202 222 34 68 chr3 201588908 201589084 -16448074 + (GTGTG)n Simple_repeat Simple_repeat 1 170 0 * 278 261 39 26 chr3 201588997 201589150 -16448008 + (TG)n Simple_repeat Simple_repeat 1 155 0 771 184 16 98 chr3 201590670 201590915 -16446243 - L1MC5 LINE L1 -28 7933 7709 2330 100 0 0 chr3 201591033 201591323 -16445835 + AluSx SINE Alu 2 291 -21 2005 123 29 0 chr3 201591338 201591651 -16445507 + AluSx SINE Alu 2 322 0 1411 242 119 33 chr3 201592086 201592611 -16444547 - MLT1F1 LTR MaLR 0 567 1 817 268 59 80 chr3 201592611 201593037 -16444121 + MLT1H LTR MaLR 133 549 0 191 345 0 0 chr3 201593041 201593096 -16444062 - MIR SINE MIR -55 153 99 285 284 11 0 chr3 201593151 201593239 -16443919 + MIR SINE MIR 53 141 -67 520 318 103 0 chr3 201593697 201593911 -16443247 + MIR SINE MIR 20 255 -7 211 321 123 34 chr3 201593990 201594328 -16442830 + L2 LINE L2 2690 3057 -215 2187 109 3 0 chr3 201594646 201594968 -16442190 - AluSg SINE Alu 0 323 1 293 279 0 0 chr3 201595898 201595966 -16441192 - L2 LINE L2 0 3272 3205 1547 230 143 26 chr3 201596475 201596967 -16440191 + MLT1F1 LTR MaLR 8 567 0 247 286 29 0 chr3 201597423 201597493 -16439665 - Charlie8 DNA MER1_type -1000 1417 1346 570 312 35 9 chr3 201597663 201597894 -16439264 + MIR SINE MIR 20 256 -6 1481 145 38 116 chr3 201598731 201599076 -16438082 + AluYb8 SINE Alu 1 318 0 2065 116 34 7 chr3 201599085 201599379 -16437779 - AluSx SINE Alu -10 302 1 2294 86 0 51 chr3 201600395 201600710 -16436448 - AluSx SINE Alu -11 301 3 1752 140 23 47 chr3 201601002 201601302 -16435856 + AluJo SINE Alu 1 293 -19 992 218 229 38 chr3 201601364 201601721 -16435437 - MLT1G LTR MaLR 0 583 295 2137 91 31 3 chr3 201601721 201602007 -16435151 + AluSp SINE Alu 1 294 -19 992 218 229 38 chr3 201602007 201602159 -16434999 - MLT1G LTR MaLR -288 295 1 2210 104 10 3 chr3 201602209 201602516 -16434642 - AluSx SINE Alu -2 310 2 1878 153 3 19 chr3 201602715 201603023 -16434135 - AluJo SINE Alu -9 303 1 906 267 20 20 chr3 201603632 201603887 -16433271 - MIR SINE MIR -2 260 6 2251 114 0 0 chr3 201603942 201604250 -16432908 - AluSc SINE Alu -1 308 1 2278 106 0 0 chr3 201605036 201605329 -16431829 - AluSx SINE Alu -19 293 1 232 237 40 13 chr3 201605653 201605729 -16431429 + (TATG)n Simple_repeat Simple_repeat 1 78 0 219 188 0 0 chr3 201606285 201606333 -16430825 + (TA)n Simple_repeat Simple_repeat 1 48 0 418 273 42 0 chr3 201606384 201606527 -16430631 + MIR SINE MIR 90 238 -24 437 258 172 7 chr3 201607621 201607772 -16429386 + MER5B DNA MER1_type 1 176 -2 513 199 90 48 chr3 201608157 201608323 -16428835 - MER69A DNA AcHobo -4 173 1 230 312 108 0 chr3 201608407 201608500 -16428658 - MIR SINE MIR -111 151 49 2231 95 7 7 chr3 201608786 201609081 -16428077 - AluSq SINE Alu -18 295 1 368 199 108 20 chr3 201609249 201609435 -16427723 + Charlie7 DNA MER1_type 1 2542 -70 701 211 23 123 chr3 201609436 201609495 -16427663 + MIR SINE MIR 4 67 -195 866 87 8 0 chr3 201609495 201609621 -16427537 + L1PA8 LINE L1 6046 6172 0 2279 91 10 10 chr3 201609630 201609939 -16427219 + AluSc SINE Alu 1 309 0 701 211 23 123 chr3 201609939 201610129 -16427029 + MIR SINE MIR 75 237 -25 22 0 0 0 chr3 201611553 201611575 -16425583 + AT_rich Low_complexity Low_complexity 1 22 0 850 108 100 0 chr3 201612363 201612483 -16424675 - AluSc SINE Alu -19 290 159 4271 236 83 89 chr3 201612772 201614078 -16423080 - L2 LINE L2 -1 3312 2000 1040 81 0 0 chr3 201614078 201614202 -16422956 + AluSg1 SINE Alu 1 124 -185 2073 121 28 0 chr3 201614203 201614493 -16422665 + AluSg1 SINE Alu 1 298 -11 4271 236 83 89 chr3 201614493 201615161 -16421997 - L2 LINE L2 -1312 2001 1218 265 275 32 101 chr3 201615667 201615885 -16421273 - L2 LINE L2 -3033 281 79 977 261 92 11 chr3 201615914 201616262 -16420896 + LTR16A LTR ERVL 55 430 -20 1660 328 63 13 chr3 201616277 201616961 -16420197 + HERV16 LTR ERVL 6 723 -4273 1442 346 76 30 chr3 201617347 201618409 -16418749 + ERVL LTR ERVL 3883 4993 -771 1997 147 3 3 chr3 201618675 201618975 -16418183 - AluSx SINE Alu -12 300 1 580 230 6 75 chr3 201619005 201619064 -16418094 - LTR16A LTR ERVL 0 450 389 549 125 23 0 chr3 201619064 201619183 -16417975 + L1PA16 LINE L1 6068 6188 0 580 230 6 75 chr3 201619183 201619281 -16417877 - LTR16A LTR ERVL -61 389 301 351 258 250 31 chr3 201619634 201619762 -16417396 - LTR16A LTR ERVL -279 171 16 228 232 66 55 chr3 201619764 201619945 -16417213 - Charlie7 DNA MER1_type -41 2571 2389 * 1857 213 68 104 chr3 201619918 201620045 -16417113 - Charlie7 DNA MER1_type -1902 710 580 2332 87 3 0 chr3 201620045 201620332 -16416826 - AluSq SINE Alu -25 288 1 1857 213 68 104 chr3 201620332 201620544 -16416614 - Charlie7 DNA MER1_type -2032 580 362 3519 119 4 4 chr3 201620544 201621083 -16416075 - L1MA5A LINE L1 0 6297 5759 1857 213 68 104 chr3 201621083 201621479 -16415679 - Charlie7 DNA MER1_type -2250 362 1 22 35 0 0 chr3 201621826 201621855 -16415303 + AT_rich Low_complexity Low_complexity 1 29 0 2192 119 0 0 chr3 201621883 201622178 -16414980 + AluSq SINE Alu 1 295 -18 194 0 39 0 chr3 201622222 201622248 -16414910 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1044 268 53 63 chr3 201622298 201622791 -16414367 - MLT1J LTR MaLR -14 497 10 758 149 91 0 chr3 201623184 201623305 -16413853 + AluJb SINE Alu 3 134 -178 21 36 0 0 chr3 201624232 201624260 -16412898 + AT_rich Low_complexity Low_complexity 1 28 0 2179 118 3 3 chr3 201624424 201624729 -16412429 - AluSx SINE Alu -7 305 1 2329 105 3 0 chr3 201624777 201625081 -16412077 - AluY SINE Alu -6 305 1 2306 100 3 3 chr3 201625235 201625545 -16411613 + AluY SINE Alu 1 310 -1 1010 161 32 42 chr3 201625969 201626186 -16410972 - L1MB8 LINE L1 0 6178 5964 1003 117 0 0 chr3 201626191 201626319 -16410839 - FLAM_C SINE Alu -15 128 1 977 119 0 13 chr3 201626319 201626478 -16410680 - L1MB8 LINE L1 -357 5827 5671 3790 181 15 48 chr3 201628768 201629250 -16407908 + L1MB7 LINE L1 4268 4764 -1382 1985 142 0 46 chr3 201629250 201629392 -16407766 + AluJo SINE Alu 1 148 -164 2128 115 4 0 chr3 201629392 201629671 -16407487 + AluSp SINE Alu 1 280 -33 342 0 0 0 chr3 201629671 201629709 -16407449 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1985 142 0 46 chr3 201629709 201629890 -16407268 + AluJo SINE Alu 146 310 -2 3790 181 15 48 chr3 201629890 201630290 -16406868 + L1MB7 LINE L1 4764 5121 -1025 2006 176 3 3 chr3 201630287 201630651 -16406507 + L1MB7 LINE L1 5364 5727 -457 * 2162 122 26 11 chr3 201630651 201631002 -16406156 + L1PA16 LINE L1 5804 6160 -6 2267 133 50 25 chr3 201631372 201631466 -16405692 + L1MB7 LINE L1 5720 5810 -374 1914 119 0 0 chr3 201631466 201631719 -16405439 + AluSq SINE Alu 48 300 -13 2267 133 50 25 chr3 201631719 201631781 -16405377 + L1MB7 LINE L1 5810 5869 -315 1946 177 0 0 chr3 201631781 201632081 -16405077 + AluSx SINE Alu 1 300 -12 2267 133 50 25 chr3 201632081 201632320 -16404838 + L1MB7 LINE L1 5869 6126 -58 3005 141 46 6 chr3 201632351 201632854 -16404304 - L1MB3 LINE L1 -2 6181 5659 3304 137 45 40 chr3 201632359 201632854 -16404304 - L1MB3 LINE L1 -7 6176 5685 2371 105 0 0 chr3 201632854 201633158 -16404000 - AluSx SINE Alu -8 304 1 3304 137 45 40 chr3 201633158 201633268 -16403890 - L1MB3 LINE L1 -498 5685 5565 2267 115 0 6 chr3 201633268 201633582 -16403576 - AluSx SINE Alu 0 312 1 3304 137 45 40 chr3 201633582 201633603 -16403555 - L1MB3 LINE L1 -618 5565 5546 2060 141 0 16 chr3 201633628 201633934 -16403224 + AluSx SINE Alu 1 301 -11 230 143 54 0 chr3 201633948 201634004 -16403154 + L1MB7 LINE L1 6126 6184 0 325 253 147 53 chr3 201634338 201634563 -16402595 + MLT1J2 LTR MaLR 21 266 -184 889 186 71 9 chr3 201634580 201634790 -16402368 + MER58B DNA MER1_type 9 231 -110 800 207 6 17 chr3 201634792 201634971 -16402187 - AluJb SINE Alu 0 312 136 698 147 17 0 chr3 201634971 201635087 -16402071 + MER58B DNA MER1_type 223 340 -1 293 202 0 0 chr3 201635149 201635216 -16401942 + MLT1J2 LTR MaLR 317 428 -22 27 0 0 0 chr3 201635417 201635444 -16401714 + AT_rich Low_complexity Low_complexity 1 27 0 192 346 197 29 chr3 201635818 201636642 -16400516 - L2 LINE L2 -2052 1262 301 2258 109 0 3 chr3 201637117 201637419 -16399739 + AluSx SINE Alu 1 301 -11 2093 122 53 3 chr3 201637584 201637905 -16399253 + MER1B DNA MER1_type 1 337 0 654 199 5 2 chr3 201637947 201638093 -16399065 + L1MA4 LINE L1 5891 6041 -256 271 167 0 0 chr3 201638086 201638140 -16399018 + L1MB2 LINE L1 6079 6132 -39 * 692 185 216 19 chr3 201638164 201638423 -16398735 + L1MC4 LINE L1 7720 8029 -13 2089 135 23 0 chr3 201638919 201639223 -16397935 + AluSx SINE Alu 1 311 -1 203 256 67 44 chr3 201639335 201639425 -16397733 + MIR SINE MIR 163 254 -8 257 121 60 48 chr3 201640099 201640182 -16396976 + (TTAA)n Simple_repeat Simple_repeat 4 87 0 32 0 0 0 chr3 201640206 201640238 -16396920 + AT_rich Low_complexity Low_complexity 1 32 0 1135 152 5 11 chr3 201640238 201640429 -16396729 - L1PA16 LINE L1 -9 6157 5968 565 232 7 7 chr3 201640506 201640648 -16396510 + L1ME1 LINE L1 4763 4904 -1242 1122 183 22 75 chr3 201641284 201641607 -16395551 + L1ME1 LINE L1 4890 5194 -952 2264 108 3 3 chr3 201641607 201641912 -16395246 + AluSx SINE Alu 1 305 -7 1122 183 22 75 chr3 201641912 201641948 -16395210 + L1ME1 LINE L1 5194 5230 -916 1581 249 54 67 chr3 201641948 201642067 -16395091 + MLT1E2 LTR MaLR 1 120 -506 1853 155 7 7 chr3 201642067 201642364 -16394794 + AluJb SINE Alu 1 297 -15 1581 249 54 67 chr3 201642364 201642870 -16394288 + MLT1E2 LTR MaLR 120 618 -8 791 226 8 6 chr3 201642874 201643082 -16394076 + L1ME1 LINE L1 5226 5433 -733 1274 211 81 49 chr3 201643104 201643559 -16393599 + MLT1E LTR MaLR 128 588 -2 2409 224 19 15 chr3 201643559 201644175 -16392983 + L1ME1 LINE L1 5462 6080 -86 463 333 50 25 chr3 201644196 201644475 -16392683 + L1M4 LINE L1 4394 4679 -1467 202 234 47 47 chr3 201645282 201645346 -16391812 + MER5B DNA MER1_type 3 66 -112 331 293 7 68 chr3 201645352 201645427 -16391731 + MER5B DNA MER1_type 24 87 -91 2046 87 49 14 chr3 201645427 201645713 -16391445 + AluSg SINE Alu 2 297 -13 331 293 7 68 chr3 201645713 201645784 -16391374 + MER5B DNA MER1_type 87 161 -17 185 179 0 36 chr3 201645872 201645928 -16391230 + A-rich Low_complexity Low_complexity 1 54 0 453 193 0 0 chr3 201647737 201647835 -16389323 - L1MB7 LINE L1 0 6174 6076 2387 107 0 0 chr3 201647899 201648208 -16388950 + AluSx SINE Alu 1 309 -3 954 180 11 26 chr3 201648295 201648484 -16388674 + MER5A DNA MER1_type 1 186 -3 2303 120 0 0 chr3 201648659 201648968 -16388190 + AluSq SINE Alu 1 309 -4 236 298 202 9 chr3 201649379 201649493 -16387665 - MIR3 SINE MIR -43 165 30 581 302 32 20 chr3 201649728 201650072 -16387086 - L1ME4a LINE L1 -219 5902 5555 26 0 0 0 chr3 201650173 201650199 -16386959 + AT_rich Low_complexity Low_complexity 1 26 0 1588 219 63 19 chr3 201650205 201650727 -16386431 + L1ME1 LINE L1 5594 6159 -7 1984 153 36 28 chr3 201652133 201652326 -16384832 + MSTB LTR MaLR 1 191 -235 2288 96 0 3 chr3 201652326 201652628 -16384530 + AluSg SINE Alu 1 301 -9 1984 153 36 28 chr3 201652628 201652821 -16384337 + MSTB LTR MaLR 191 390 -36 2581 36 0 3 chr3 201652822 201653126 -16384032 - AluY SINE Alu -8 303 1 186 43 0 0 chr3 201653310 201653333 -16383825 + (CAA)n Simple_repeat Simple_repeat 2 24 0 334 293 85 14 chr3 201653451 201653615 -16383543 + MIR3 SINE MIR 15 192 -68 2315 109 3 0 chr3 201653802 201654114 -16383044 + AluSq SINE Alu 1 313 0 2082 134 39 0 chr3 201655331 201655666 -16381492 + MER7A DNA MER2_type 1 346 0 427 326 106 13 chr3 201655710 201655946 -16381212 - L3b LINE CR1 -209 1374 1117 2225 114 7 3 chr3 201656629 201656935 -16380223 - AluSx SINE Alu -5 307 1 2065 130 75 100 chr3 201657008 201657159 -16379999 - Charlie1b DNA MER1_type -2239 522 369 1977 135 10 19 chr3 201657159 201657471 -16379687 + AluSx SINE Alu 1 309 -3 2065 130 75 100 chr3 201657471 201657850 -16379308 - Charlie1b DNA MER1_type -2392 369 5 377 310 99 58 chr3 201658095 201658511 -16378647 - HAL1 LINE L1 -1170 1337 905 2324 108 0 6 chr3 201659279 201659593 -16377565 + AluSx SINE Alu 1 312 0 1787 174 155 0 chr3 201659649 201660068 -16377090 - MLT1D LTR MaLR 0 505 22 213 271 224 0 chr3 201660093 201660200 -16376958 - MIR SINE MIR -29 233 103 2810 245 56 18 chr3 201660201 201661083 -16376075 + L2 LINE L2 2255 3169 -144 1444 245 105 9 chr3 201661122 201661428 -16375730 + MLT1F LTR MaLR 1 361 -181 2419 109 0 0 chr3 201661428 201661741 -16375417 + AluSq SINE Alu 1 313 0 1444 245 105 9 chr3 201661741 201661863 -16375295 + MLT1F LTR MaLR 361 470 -72 427 284 57 21 chr3 201661971 201662112 -16375046 + L2 LINE L2 3168 3313 0 302 309 24 0 chr3 201662115 201662199 -16374959 - MIR SINE MIR -157 105 20 2193 103 3 0 chr3 201662312 201662603 -16374555 + AluSp SINE Alu 1 292 -21 2333 92 0 0 chr3 201662605 201662898 -16374260 + AluSp SINE Alu 1 293 -20 492 315 50 17 chr3 201662916 201663097 -16374061 - MIR SINE MIR 0 262 76 989 73 0 0 chr3 201663195 201663319 -16373839 + AluSc SINE Alu 180 303 -6 198 0 0 0 chr3 201663319 201663341 -16373817 + (TA)n Simple_repeat Simple_repeat 2 23 0 258 32 0 0 chr3 201663342 201663373 -16373785 + (GA)n Simple_repeat Simple_repeat 1 31 0 2342 92 3 3 chr3 201663457 201663762 -16373396 + AluSp SINE Alu 1 305 -8 1981 110 36 4 chr3 201663876 201664157 -16373001 - AluSx SINE Alu -22 290 1 312 334 59 47 chr3 201664295 201664446 -16372712 - MIR SINE MIR -62 146 30 3620 135 25 12 chr3 201664925 201665677 -16371481 + L1MB8 LINE L1 5187 5947 -231 506 119 36 0 chr3 201665674 201665758 -16371400 + L1MB8 LINE L1 5861 5947 -231 * 459 143 36 0 chr3 201665755 201665839 -16371319 + L1MB8 LINE L1 5861 5947 -231 * 459 143 36 0 chr3 201665836 201665920 -16371238 + L1MB8 LINE L1 5861 5947 -231 * 478 131 36 0 chr3 201665917 201666001 -16371157 + L1MB8 LINE L1 5861 5947 -231 459 143 36 0 chr3 201665998 201666082 -16371076 + L1MB8 LINE L1 5861 5947 -231 * 459 143 36 0 chr3 201666079 201666163 -16370995 + L1MB8 LINE L1 5861 5947 -231 459 143 36 0 chr3 201666160 201666244 -16370914 + L1MB8 LINE L1 5861 5947 -231 459 143 36 0 chr3 201666241 201666325 -16370833 + L1MB8 LINE L1 5861 5947 -231 459 143 36 0 chr3 201666322 201666406 -16370752 + L1MB8 LINE L1 5861 5947 -231 459 143 36 0 chr3 201666403 201666487 -16370671 + L1MB8 LINE L1 5861 5947 -231 459 143 36 0 chr3 201666484 201666568 -16370590 + L1MB8 LINE L1 5861 5947 -231 459 143 36 0 chr3 201666565 201666649 -16370509 + L1MB8 LINE L1 5861 5947 -231 * 1661 151 28 8 chr3 201666646 201666730 -16370428 + L1MB8 LINE L1 5860 5941 -237 1661 150 26 7 chr3 201666730 201667033 -16370125 + L1MB8 LINE L1 5861 6172 -6 1661 151 28 8 chr3 201667033 201667057 -16370101 + L1MB8 LINE L1 5941 6172 -6 344 146 1 90 chr3 201667438 201667510 -16369648 + L1ME4a LINE L1 5748 5813 -308 2415 84 3 0 chr3 201667510 201667809 -16369349 - AluSp SINE Alu -13 300 1 344 146 1 90 chr3 201667809 201667836 -16369322 + L1ME4a LINE L1 5813 5841 -280 1286 213 67 18 chr3 201667851 201668641 -16368517 + L1M4c LINE L1 1532 2458 -3924 2328 103 0 0 chr3 201668703 201669005 -16368153 - AluSc SINE Alu -7 302 1 340 204 102 14 chr3 201669062 201669209 -16367949 + L1ME4a LINE L1 5959 6118 -3 2269 100 10 0 chr3 201669962 201670261 -16366897 + AluSx SINE Alu 1 302 -10 29 47 0 0 chr3 201670604 201670647 -16366511 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr3 201670817 201670839 -16366319 + AT_rich Low_complexity Low_complexity 1 22 0 275 219 132 0 chr3 201671103 201671217 -16365941 - L1ME4a LINE L1 -3 6118 5990 1369 82 0 26 chr3 201671244 201671438 -16365720 + MER1B DNA MER1_type 87 275 -64 467 108 0 36 chr3 201671447 201671530 -16365628 + MER1B DNA MER1_type 254 333 0 339 282 0 19 chr3 201671531 201671634 -16365524 - L1ME4a LINE L1 -201 5920 5820 24 0 0 0 chr3 201671647 201671671 -16365487 + AT_rich Low_complexity Low_complexity 1 24 0 697 314 63 0 chr3 201671902 201672141 -16365017 - MIR SINE MIR -6 256 3 1114 297 62 7 chr3 201672215 201672798 -16364360 - L1M4 LINE L1 -1779 5070 4456 9476 163 32 47 chr3 201672823 201675799 -16361359 - L1PB4 LINE L1 -5 6867 3894 6150 90 25 12 chr3 201675871 201677096 -16360062 - L1PB1 LINE L1 -2 6149 4916 2231 181 30 4 chr3 201677115 201677645 -16359513 + L1PB1 LINE L1 4364 4907 -1239 2510 239 86 5 chr3 201677649 201678451 -16358707 - L1PB4 LINE L1 -5991 872 6 2868 218 118 20 chr3 201678470 201679473 -16357685 - L1PA15-16 LINE L1 -2970 3879 2779 422 257 9 0 chr3 201679481 201679594 -16357564 - L1 LINE L1 -2411 3735 3622 927 211 88 9 chr3 201679617 201679980 -16357178 + MLT1C LTR MaLR 53 465 -2 434 292 41 5 chr3 201679982 201680177 -16356981 - L1 LINE L1 -2520 3626 3425 1372 246 94 9 chr3 201681656 201682291 -16354867 - L1 LINE L1 -2828 3318 2630 192 289 12 60 chr3 201682473 201682556 -16354602 + MIR SINE MIR 69 147 -115 36 23 0 0 chr3 201682589 201682632 -16354526 + AT_rich Low_complexity Low_complexity 1 43 0 580 264 36 12 chr3 201683019 201683186 -16353972 - MIR SINE MIR -10 252 82 1611 174 77 21 chr3 201684182 201684198 -16352960 + THE1C LTR MaLR 1 15 -360 2489 58 0 0 chr3 201684198 201684489 -16352669 - AluY SINE Alu -20 291 1 1611 174 77 21 chr3 201684489 201684841 -16352317 + THE1C LTR MaLR 15 375 0 1373 243 84 30 chr3 201684844 201685247 -16351911 + MLT1J LTR MaLR 83 507 -4 203 211 70 0 chr3 201685317 201685374 -16351784 - L2 LINE L2 -1079 2235 2175 525 259 22 58 chr3 201686308 201686532 -16350626 - MER112 DNA MER1_type -44 216 1 279 0 0 0 chr3 201686670 201686701 -16350457 + (TG)n Simple_repeat Simple_repeat 2 32 0 201 306 0 0 chr3 201686767 201686816 -16350342 + GA-rich Low_complexity Low_complexity 4 52 0 188 217 150 0 chr3 201687044 201687104 -16350054 - MIR SINE MIR -68 194 126 2429 56 6 41 chr3 201687182 201687502 -16349656 + AluSc SINE Alu 1 309 0 22 0 0 0 chr3 201688295 201688317 -16348841 + AT_rich Low_complexity Low_complexity 1 22 0 1621 22 11 0 chr3 201688463 201688642 -16348516 + L1PA4 LINE L1 5975 6155 0 218 143 0 0 chr3 201688749 201688783 -16348375 + MIR SINE MIR 114 146 -116 315 122 0 0 chr3 201688823 201688872 -16348286 + (A)n Simple_repeat Simple_repeat 1 49 0 4343 126 46 28 chr3 201689581 201690294 -16346864 + LTR8A LTR ERV1 1 726 -1 2274 125 13 55 chr3 201690347 201690731 -16346427 - MER51B LTR ERV1 -9 368 1 2503 59 3 7 chr3 201690736 201691043 -16346115 - AluY SINE Alu -5 306 1 1785 83 21 0 chr3 201691091 201691332 -16345826 - MER51A LTR ERV1 0 634 389 2214 115 7 0 chr3 201691338 201691642 -16345516 + AluSg SINE Alu 1 306 -4 2647 92 58 12 chr3 201691650 201692365 -16344793 - MER57-int LTR ERV1 -1808 5729 4656 15970 121 53 23 chr3 201692384 201693428 -16343730 - MER57-int LTR ERV1 -4538 3278 2267 3837 44 50 0 chr3 201693428 201693883 -16343275 - L1PA6 LINE L1 0 6154 5677 * 7593 47 13 0 chr3 201693880 201695342 -16341816 - L1PA6 LINE L1 -1 6153 4681 15970 121 53 23 chr3 201693883 201695687 -16341471 - MER57-int LTR ERV1 -5549 2267 520 1867 141 33 10 chr3 201695687 201695986 -16341172 - AluSx SINE Alu -6 306 1 15970 121 53 23 chr3 201695986 201696554 -16340604 - MER57-int LTR ERV1 -7296 520 -29 189 0 0 0 chr3 201696554 201696575 -16340583 + (CA)n Simple_repeat Simple_repeat 2 22 0 15970 121 53 23 chr3 201696575 201697304 -16339854 - MER57-int LTR ERV1 -7845 4294967267 503 2359 103 0 0 chr3 201697304 201697604 -16339554 + AluSg SINE Alu 1 300 -10 15970 121 53 23 chr3 201697604 201697661 -16339497 - MER57-int LTR ERV1 -7312 504 450 302 154 31 0 chr3 201697659 201697724 -16339434 + MER4D-int LTR ERV1 3316 3382 -3216 * 1110 134 17 6 chr3 201697796 201697975 -16339183 - AluSg/x SINE Alu 0 312 132 34 0 0 0 chr3 201697975 201698009 -16339149 + AT_rich Low_complexity Low_complexity 1 34 0 2156 123 10 0 chr3 201698009 201698310 -16338848 - AluSq SINE Alu -9 304 1 2390 91 3 0 chr3 201698314 201698612 -16338546 - AluSp SINE Alu -14 299 1 1045 157 53 79 chr3 201698615 201698903 -16338255 + MER4D-int LTR ERV1 2426 3728 -2870 2486 81 0 0 chr3 201698904 201699211 -16337947 - AluY SINE Alu -1 310 4 1022 138 76 24 chr3 201699262 201699472 -16337686 + MER4D-int LTR ERV1 3732 3952 -2646 1606 87 10 5 chr3 201699489 201699697 -16337461 + AluSp SINE Alu 1 209 -104 5642 104 11 14 chr3 201699697 201700479 -16336679 + LTR17 LTR ERV1 1 780 0 673 121 0 0 chr3 201700479 201700570 -16336588 + AluSp SINE Alu 206 296 -17 540 155 45 84 chr3 201700622 201700777 -16336381 + MER4D-int LTR ERV1 4578 4726 -1872 690 144 32 138 chr3 201700964 201701120 -16336038 + MER4D-int LTR ERV1 3787 3921 -4199 2438 78 0 13 chr3 201701120 201701428 -16335730 - AluSx SINE Alu -8 304 1 690 144 32 138 chr3 201701428 201701459 -16335699 + MER4D-int LTR ERV1 3921 3954 -4166 528 183 115 35 chr3 201701663 201701828 -16335330 + MER4D-int LTR ERV1 3951 6164 -594 * 1602 205 95 0 chr3 201701798 201702144 -16335014 + MER4D-int LTR ERV1 6377 6755 -3 1118 173 42 48 chr3 201702147 201702435 -16334723 + MER4D LTR ERV1 1 290 -633 601 142 38 19 chr3 201702420 201702526 -16334632 + MER49 LTR ERV1 616 723 -200 * 1225 200 0 18 chr3 201702529 201702754 -16334404 + MER41D-int LTR ERV1 4608 4828 -1848 2124 176 11 3 chr3 201703104 201703470 -16333688 + MER41D-int LTR ERV1 5833 5937 -9 975 192 0 0 chr3 201703474 201703641 -16333517 + MER41D LTR ERV1 1 167 -390 2013 161 69 80 chr3 201703666 201704107 -16333051 + MER41B LTR ERV1 101 382 -96 2156 116 0 3 chr3 201704107 201704408 -16332750 - AluSx SINE Alu -12 300 1 2013 161 69 80 chr3 201704408 201704495 -16332663 + MER41B LTR ERV1 382 468 -10 3784 23 2 0 chr3 201754573 201755005 -16282153 - HERVK LTR ERVK -6810 433 1 8101 50 1 0 chr3 201755008 201755973 -16281185 - LTR5 LTR ERVK -3 966 1 280 252 74 52 chr3 201756867 201757002 -16280156 + HERVK22 LTR ERVK 4913 5050 -2702 2048 108 24 0 chr3 201757081 201757376 -16279782 + AluSq SINE Alu 1 302 -11 343 204 78 29 chr3 201757481 201757584 -16279574 + HERVK22 LTR ERVK 4516 4623 -2214 477 359 22 22 chr3 201758892 201759263 -16277895 + HERVK22 LTR ERVK 6152 6522 -315 1882 118 18 0 chr3 201759978 201760250 -16276908 + AluSq SINE Alu 31 307 -6 269 304 47 40 chr3 201760337 201760485 -16276673 - L2 LINE L2 -208 3064 2916 222 244 24 0 chr3 201760632 201760714 -16276444 + (TATAA)n Simple_repeat Simple_repeat 1 84 0 1962 119 0 3 chr3 201760786 201761101 -16276057 + AluSx SINE Alu 1 314 0 2319 51 6 16 chr3 201761103 201761417 -16275741 + AluY SINE Alu 1 311 0 2168 116 0 3 chr3 201761453 201761755 -16275403 + AluSx SINE Alu 1 301 -11 2299 78 10 0 chr3 201761759 201762068 -16275090 + AluSp SINE Alu 1 312 -1 2088 102 3 0 chr3 201762286 201762604 -16274554 - AluSp SINE Alu 0 319 1 2041 93 0 51 chr3 201762604 201762917 -16274241 - AluSx SINE Alu -15 297 1 753 186 0 0 chr3 201762929 201763047 -16274111 - FLAM_C SINE Alu -24 119 2 1964 138 0 19 chr3 201763113 201763286 -16273872 - AluSx SINE Alu -6 306 140 1897 121 7 20 chr3 201763286 201763592 -16273566 - AluSx SINE Alu -10 302 1 1964 138 0 19 chr3 201763592 201763730 -16273428 - AluSx SINE Alu -172 140 1 2172 101 0 0 chr3 201763734 201764022 -16273136 - AluSx SINE Alu -20 292 5 1602 161 0 39 chr3 201764517 201764828 -16272330 + AluJb SINE Alu 1 299 -13 2056 113 0 0 chr3 201765148 201765431 -16271727 + AluSx SINE Alu 11 293 -19 2257 94 0 7 chr3 201765623 201765931 -16271227 - AluSg SINE Alu 0 310 5 2005 119 6 10 chr3 201765944 201766255 -16270903 - AluSg SINE Alu 0 310 1 1187 72 0 0 chr3 201766277 201766429 -16270729 + AluSg/x SINE Alu 155 306 -4 1441 155 88 34 chr3 201767371 201767667 -16269491 - AluJo SINE Alu 0 312 1 2150 63 30 0 chr3 201767738 201768033 -16269125 - AluSc SINE Alu 0 304 2 290 156 138 83 chr3 201768636 201768745 -16268413 + LTR66 LTR ERVL 325 439 -171 309 51 0 0 chr3 201768745 201768784 -16268374 + (CA)n Simple_repeat Simple_repeat 2 40 0 1179 126 0 0 chr3 201768788 201768962 -16268196 - AluSg/x SINE Alu -7 303 130 351 0 0 0 chr3 201768962 201769001 -16268157 + (TG)n Simple_repeat Simple_repeat 2 40 0 1880 123 0 53 chr3 201769004 201769306 -16267852 - AluSp SINE Alu -27 286 1 1773 121 24 24 chr3 201769456 201769754 -16267404 - AluSx SINE Alu -14 298 1 2011 101 30 3 chr3 201769770 201770066 -16267092 - AluSx SINE Alu -8 304 1 27 29 0 0 chr3 201770129 201770163 -16266995 + AT_rich Low_complexity Low_complexity 1 34 0 1433 172 29 29 chr3 201770375 201770683 -16266475 + AluJo SINE Alu 5 312 0 2174 47 0 84 chr3 201771848 201771994 -16265164 + AluY SINE Alu 1 158 -153 2348 41 41 0 chr3 201771994 201772288 -16264870 + AluY SINE Alu 1 306 -5 2174 47 0 84 chr3 201772288 201772300 -16264858 + AluY SINE Alu 158 169 -142 2110 98 0 20 chr3 201772300 201772606 -16264552 + AluSg SINE Alu 1 300 -10 2174 47 0 84 chr3 201772606 201772768 -16264390 + AluY SINE Alu 169 295 -16 2155 128 0 0 chr3 201772906 201773218 -16263940 + AluSx SINE Alu 1 312 0 204 267 0 0 chr3 201773978 201774023 -16263135 + (CCG)n Simple_repeat Simple_repeat 2 46 0 467 282 96 45 chr3 201774455 201774675 -16262483 - MIR SINE MIR -14 248 18 1922 129 0 0 chr3 201774962 201775240 -16261918 + AluJb SINE Alu 1 278 -34 2081 108 0 29 chr3 201775485 201775799 -16261359 + AluSx SINE Alu 1 305 -7 231 36 0 0 chr3 201775803 201775831 -16261327 + (TG)n Simple_repeat Simple_repeat 1 28 0 300 241 0 0 chr3 201775831 201775885 -16261273 - L1MC4 LINE L1 -1340 6702 6649 360 0 0 0 chr3 201775885 201775925 -16261233 + (CA)n Simple_repeat Simple_repeat 1 40 0 567 112 12 193 chr3 201776258 201776419 -16260739 + AluSx SINE Alu 34 165 -147 27 0 0 0 chr3 201776665 201776692 -16260466 + AT_rich Low_complexity Low_complexity 1 27 0 1116 150 110 113 chr3 201776692 201776992 -16260166 - AluJo SINE Alu -3 299 1 400 121 16 0 chr3 201777448 201777517 -16259641 - Alu SINE Alu 0 302 240 311 341 85 9 chr3 201777603 201777814 -16259344 - MIR SINE MIR -16 246 20 2288 96 0 0 chr3 201778116 201778417 -16258741 - AluSx SINE Alu -11 301 1 21 0 0 0 chr3 201778497 201778518 -16258640 + AT_rich Low_complexity Low_complexity 1 21 0 817 136 0 57 chr3 201778774 201778914 -16258244 - FLAM_C SINE Alu -1 132 1 594 215 221 60 chr3 201778957 201779219 -16257939 - MER113 DNA MER1_type? 0 521 302 2244 100 3 0 chr3 201779219 201779528 -16257630 - AluSq SINE Alu -3 310 1 594 215 221 60 chr3 201779528 201779646 -16257512 - MER113 DNA MER1_type? -219 302 80 685 181 8 16 chr3 201779908 201780035 -16257123 + MER3 DNA MER1_type 83 208 -1 2043 87 4 0 chr3 201780121 201780386 -16256772 - AluSx SINE Alu -13 299 34 1065 80 7 0 chr3 201780387 201780524 -16256634 - AluSq/x SINE Alu -175 138 1 1123 141 0 0 chr3 201781298 201781468 -16255690 - AluSg/x SINE Alu -9 303 134 1977 128 7 0 chr3 201781468 201781764 -16255394 - AluSx SINE Alu -14 298 1 1936 138 3 7 chr3 201781838 201782136 -16255022 + AluJb SINE Alu 1 297 -15 2002 123 0 0 chr3 201782340 201782651 -16254507 - AluSg SINE Alu 0 312 2 1891 112 0 14 chr3 201782859 201783146 -16254012 - AluSx SINE Alu -18 294 12 2193 92 3 3 chr3 201783159 201783454 -16253704 - AluSp SINE Alu -18 295 1 1744 152 27 14 chr3 201783509 201783805 -16253353 - AluJb SINE Alu -11 301 2 24 0 0 0 chr3 201784192 201784216 -16252942 + GC_rich Low_complexity Low_complexity 1 24 0 999 188 4 119 chr3 201784253 201784471 -16252687 - MER82 DNA MER2_type -68 585 400 2294 82 7 3 chr3 201784471 201784777 -16252381 - AluSq SINE Alu -6 307 1 999 188 4 119 chr3 201784777 201784819 -16252339 - MER82 DNA MER2_type -253 400 355 1645 141 0 0 chr3 201784823 201785078 -16252080 + L1PB4 LINE L1 5688 5942 -214 2190 105 0 3 chr3 201785086 201785371 -16251787 + AluSx SINE Alu 1 284 -28 244 0 0 0 chr3 201785371 201785398 -16251760 + (TAAA)n Simple_repeat Simple_repeat 2 84 0 2083 176 14 3 chr3 201785398 201785745 -16251413 - MER82 DNA MER2_type -295 358 8 676 152 10 0 chr3 201785772 201785871 -16251287 + FLAM_C SINE Alu 14 113 -30 382 279 163 47 chr3 201785886 201786007 -16251151 - HAL1b LINE L1 -581 767 661 2140 123 0 10 chr3 201786007 201786309 -16250849 - AluSx SINE Alu -12 300 2 382 279 163 47 chr3 201786309 201786496 -16250662 - HAL1b LINE L1 -687 661 402 2075 123 0 3 chr3 201786496 201786812 -16250346 - AluSq SINE Alu 0 317 3 382 279 163 47 chr3 201786812 201786888 -16250270 - HAL1b LINE L1 -946 402 336 336 286 101 0 chr3 201786891 201787010 -16250148 + L2 LINE L2 3183 3313 0 294 146 5 15 chr3 201787038 201787097 -16250061 - Alu SINE Alu -261 42 1 649 226 80 0 chr3 201787599 201787736 -16249422 + MER58B DNA MER1_type 191 338 -3 619 138 106 24 chr3 201787763 201787886 -16249272 + FLAM_C SINE Alu 1 133 0 472 275 30 23 chr3 201787902 201788033 -16249125 + MIR SINE MIR 20 151 -111 2263 95 0 33 chr3 201788033 201788338 -16248820 + AluSx SINE Alu 1 295 -17 198 0 0 0 chr3 201788342 201788364 -16248794 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1958 141 6 13 chr3 201788396 201788709 -16248449 + AluJo SINE Alu 1 311 -1 315 280 0 42 chr3 201788976 201789094 -16248064 + HAL1b LINE L1 794 906 -442 2462 93 0 0 chr3 201789354 201789664 -16247494 - AluSx SINE Alu -2 310 1 1313 210 108 42 chr3 201789884 201790308 -16246850 - LTR16B LTR ERVL -12 452 1 2128 91 0 0 chr3 201790429 201790692 -16246466 + AluSq SINE Alu 1 263 -50 812 243 62 9 chr3 201791133 201791343 -16245815 + MER58A DNA MER1_type 4 224 0 2072 137 13 3 chr3 201791675 201791975 -16245183 + AluJb SINE Alu 1 303 -9 2395 88 0 0 chr3 201793476 201793771 -16243387 - AluSq SINE Alu -18 295 1 2207 112 3 7 chr3 201793987 201794292 -16242866 - AluSx SINE Alu -8 304 1 2398 77 0 3 chr3 201794312 201794609 -16242549 - AluY SINE Alu -15 296 1 2383 98 0 3 chr3 201794823 201795130 -16242028 + AluSq SINE Alu 1 306 -7 1788 163 10 13 chr3 201795139 201795439 -16241719 + AluJb SINE Alu 1 299 -13 25 0 0 0 chr3 201795519 201795544 -16241614 + AT_rich Low_complexity Low_complexity 1 25 0 633 282 138 15 chr3 201795609 201796074 -16241084 + L1ME4a LINE L1 5598 6119 -2 586 150 17 8 chr3 201796143 201796263 -16240895 + CT-rich Low_complexity Low_complexity 1 121 0 372 214 0 40 chr3 201796283 201796409 -16240749 + CT-rich Low_complexity Low_complexity 3 123 0 408 113 0 0 chr3 201796409 201796462 -16240696 - AluJ/FLAM SINE Alu -248 64 12 379 102 17 0 chr3 201796462 201796521 -16240637 + LTR32 LTR ERVL 29 88 -383 1331 175 12 25 chr3 201796536 201796776 -16240382 + LTR32 LTR ERVL 233 469 -2 1113 99 0 0 chr3 201797528 201797689 -16239469 + AluY SINE Alu 137 297 -14 298 318 51 3 chr3 201797724 201797866 -16239292 + MIR SINE MIR 21 166 -64 22 0 0 0 chr3 201797965 201797987 -16239171 + AT_rich Low_complexity Low_complexity 1 22 0 763 159 15 38 chr3 201798089 201798221 -16238937 + FLAM_C SINE Alu 6 134 -9 240 212 30 15 chr3 201799411 201799477 -16237681 + Charlie8 DNA MER1_type 29 95 -2322 355 319 229 2 chr3 201799713 201800123 -16237035 + L2 LINE L2 1877 2379 -935 202 261 126 72 chr3 201800413 201800524 -16236634 + L2 LINE L2 3197 3313 0 916 129 0 0 chr3 201800763 201800895 -16236263 + FLAM_C SINE Alu 1 132 -1 2411 102 0 3 chr3 201800959 201801272 -16235886 + AluSq SINE Alu 1 312 -1 575 183 0 0 chr3 201801504 201801608 -16235550 + AluSp/q SINE Alu 198 301 -12 307 294 147 7 chr3 201802607 201802743 -16234415 + L2 LINE L2 3111 3265 -7 944 211 192 37 chr3 201802825 201803200 -16233958 + L1MC4 LINE L1 7380 7812 -230 1460 120 0 5 chr3 201803206 201803414 -16233744 - AluSq SINE Alu -18 295 89 1346 202 156 31 chr3 201803548 201803576 -16233582 - L1MC4 LINE L1 -772 7270 7247 1574 121 5 9 chr3 201803576 201803799 -16233359 - AluSg/x SINE Alu -5 305 84 1346 202 156 31 chr3 201803799 201804186 -16232972 - L1MC4 LINE L1 -795 7247 6803 672 259 140 45 chr3 201804178 201804496 -16232662 + HAL1 LINE L1 807 1176 -1331 * 2105 134 10 0 chr3 201804496 201804794 -16232364 + AluSx SINE Alu 1 301 -11 672 259 140 45 chr3 201804794 201804896 -16232262 + HAL1 LINE L1 1176 1267 -1240 307 244 0 37 chr3 201804918 201805000 -16232158 + L1ME3A LINE L1 6075 6153 -17 2339 99 3 3 chr3 201805089 201805401 -16231757 + AluSq SINE Alu 1 312 -1 443 137 0 14 chr3 201806035 201806108 -16231050 + MER46C DNA MER2_type 266 337 -1 2318 70 43 0 chr3 201806336 201806635 -16230523 + AluSp SINE Alu 1 312 -1 265 325 58 25 chr3 201807019 201807139 -16230019 + L2 LINE L2 3134 3257 -15 1157 174 14 27 chr3 201808064 201808283 -16228875 + AluJb SINE Alu 86 301 -11 2614 68 0 0 chr3 201808362 201808673 -16228485 + AluY SINE Alu 1 311 0 221 284 0 15 chr3 201808674 201808741 -16228417 - MIR SINE MIR -150 112 47 232 211 11 111 chr3 201808755 201808845 -16228313 - MER5A DNA MER1_type -71 118 38 1500 176 40 7 chr3 201809060 201809355 -16227803 - AluJb SINE Alu 0 305 2 2429 53 30 0 chr3 201809367 201809669 -16227489 - AluY SINE Alu 0 311 1 2070 124 23 3 chr3 201809844 201810150 -16227008 - AluSx SINE Alu 0 312 1 993 189 0 11 chr3 201811624 201811804 -16225354 + FRAM SINE Alu 1 175 -1 666 163 0 31 chr3 201811893 201812022 -16225136 - FLAM_C SINE Alu -8 135 11 1911 131 6 42 chr3 201812051 201812364 -16224794 - AluJb SINE Alu -7 305 4 454 284 0 9 chr3 201812375 201812491 -16224667 - MIR SINE MIR -92 170 56 437 227 21 0 chr3 201812592 201812689 -16224469 - MER94 DNA DNA -14 120 22 654 173 0 0 chr3 201812742 201812846 -16224312 - FRAM SINE Alu -8 168 65 2246 90 0 56 chr3 201812936 201813259 -16223899 - AluSc SINE Alu -4 305 1 254 308 71 45 chr3 201813556 201813689 -16223469 + MIR SINE MIR 72 206 -56 668 12 12 0 chr3 201813782 201813863 -16223295 + (TTTC)n Simple_repeat Simple_repeat 4 85 0 2101 93 39 7 chr3 201813898 201814222 -16222936 - AluSc SINE Alu 0 335 3 2335 95 7 0 chr3 201814952 201815248 -16221910 - AluSx SINE Alu -14 298 1 475 91 0 0 chr3 201815836 201815902 -16221256 - AluJ/FRAM SINE Alu -18 294 229 3438 74 2 0 chr3 201815906 201816324 -16220834 + LTR5 LTR ERVK 460 878 -91 32 75 0 0 chr3 201816523 201816590 -16220568 + GC_rich Low_complexity Low_complexity 1 67 0 344 188 11 61 chr3 201816620 201816801 -16220357 + (CCCG)n Simple_repeat Simple_repeat 4 175 0 265 137 42 11 chr3 201816809 201816904 -16220254 + (CCCCG)n Simple_repeat Simple_repeat 2 99 0 720 201 26 7 chr3 201816964 201817118 -16220040 - L1MC4 LINE L1 -1117 6925 6769 2180 99 7 0 chr3 201817240 201817523 -16219635 + AluSx SINE Alu 6 290 -22 378 252 94 16 chr3 201818111 201818238 -16218920 - MER5A DNA MER1_type 0 189 53 820 116 62 20 chr3 201818256 201818402 -16218756 + FAM SINE Alu 13 164 -21 191 147 29 0 chr3 201818453 201818487 -16218671 - MER5A DNA MER1_type -108 81 47 2356 84 3 0 chr3 201818953 201819250 -16217908 - AluSg1 SINE Alu -10 299 2 2190 106 3 7 chr3 201819319 201819657 -16217501 - AluSx SINE Alu 0 337 1 2400 80 0 10 chr3 201819666 201819978 -16217180 - AluSc SINE Alu 0 309 1 2337 87 0 34 chr3 201820248 201820571 -16216587 - AluSq SINE Alu -1 312 1 849 67 19 0 chr3 201820947 201821052 -16216106 - AluSg/x SINE Alu -13 299 193 1694 169 6 25 chr3 201821270 201821584 -16215574 - AluJb SINE Alu -2 310 3 694 189 8 23 chr3 201821591 201821723 -16215435 - FLAM_A SINE Alu -3 130 1 1299 118 0 6 chr3 201821730 201821908 -16215250 - AluSg/x SINE Alu -10 300 124 2227 112 0 31 chr3 201821908 201822229 -16214929 - AluSx SINE Alu -1 311 1 472 275 30 23 chr3 201822229 201822360 -16214798 - MIR SINE MIR -111 151 20 593 146 106 24 chr3 201822376 201822499 -16214659 - FLAM_C SINE Alu 0 133 1 649 226 80 0 chr3 201822526 201822663 -16214495 - MER58B DNA MER1_type -3 338 191 294 146 5 15 chr3 201823165 201823224 -16213934 + Alu SINE Alu 1 42 -261 336 286 101 0 chr3 201823252 201823371 -16213787 - L2 LINE L2 0 3313 3183 429 271 163 47 chr3 201823374 201823450 -16213708 + HAL1b LINE L1 336 402 -946 2048 130 0 3 chr3 201823450 201823766 -16213392 + AluSq SINE Alu 3 317 0 429 271 163 47 chr3 201823766 201823953 -16213205 + HAL1b LINE L1 402 566 -782 2148 122 0 10 chr3 201823953 201824256 -16212902 + AluSx SINE Alu 2 301 -11 429 271 163 47 chr3 201824256 201824377 -16212781 + HAL1b LINE L1 566 767 -581 676 152 10 0 chr3 201824392 201824491 -16212667 - FLAM_C SINE Alu -30 113 14 1845 180 16 0 chr3 201824518 201824829 -16212329 + MER82 DNA MER2_type 8 323 -330 1759 144 7 10 chr3 201824948 201825239 -16211919 + AluSx SINE Alu 22 311 -1 565 250 7 0 chr3 201825277 201825413 -16211745 + FLAM_A SINE Alu 5 141 -1 425 254 121 62 chr3 201825417 201825573 -16211585 - L1MD2 LINE L1 -137 6222 6048 2149 110 3 0 chr3 201825573 201825855 -16211303 - AluSq SINE Alu -17 296 14 425 254 121 62 chr3 201825855 201825922 -16211236 - L1MD2 LINE L1 -311 6048 5986 1821 171 7 3 chr3 201826104 201826408 -16210750 + AluJo SINE Alu 1 305 -7 2085 128 0 3 chr3 201826742 201827047 -16210111 - AluSx SINE Alu -8 304 1 470 229 29 133 chr3 201827266 201827430 -16209728 - MIR SINE MIR -1 261 82 1758 162 54 7 chr3 201827430 201827727 -16209431 + AluJo SINE Alu 1 311 -1 2582 39 10 3 chr3 201827733 201828042 -16209116 + AluY SINE Alu 1 311 0 470 229 29 133 chr3 201828042 201828110 -16209048 - MIR SINE MIR -185 77 47 232 211 11 111 chr3 201828124 201828214 -16208944 - MER5A DNA MER1_type -71 118 38 1309 199 44 11 chr3 201828429 201828724 -16208434 - AluJb SINE Alu 0 305 2 2429 53 30 0 chr3 201828736 201829038 -16208120 - AluY SINE Alu 0 311 1 2070 124 23 3 chr3 201829213 201829519 -16207639 - AluSx SINE Alu 0 312 1 321 319 34 50 chr3 201830867 201831105 -16206053 + L1ME LINE L1 5538 5771 -350 1331 175 12 25 chr3 201832017 201832257 -16204901 - LTR32 LTR ERVL -2 469 233 379 102 17 0 chr3 201832272 201832331 -16204827 - LTR32 LTR ERVL -383 88 29 408 113 0 0 chr3 201832331 201832384 -16204774 + AluJ/FLAM SINE Alu 12 64 -248 840 106 11 39 chr3 201832395 201832574 -16204584 + (GGAA)n Simple_repeat Simple_repeat 4 177 0 468 34 0 11 chr3 201832574 201832661 -16204497 + (GAAA)n Simple_repeat Simple_repeat 1 86 0 633 282 138 15 chr3 201832730 201833195 -16203963 - L1ME4a LINE L1 -2 6119 5598 25 0 0 0 chr3 201833260 201833285 -16203873 + AT_rich Low_complexity Low_complexity 1 25 0 1818 160 10 13 chr3 201833365 201833665 -16203493 - AluJb SINE Alu -13 299 1 2243 102 7 10 chr3 201833675 201833980 -16203178 - AluSq SINE Alu -9 304 1 189 176 0 0 chr3 201834245 201834279 -16202879 - MIR SINE MIR -102 106 73 2329 108 0 3 chr3 201834400 201834707 -16202451 - AluSg SINE Alu -4 306 1 1561 157 79 0 chr3 201834909 201835176 -16201982 + AluJb SINE Alu 1 288 -24 22 70 0 0 chr3 201835176 201835219 -16201939 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr3 201835262 201835284 -16201874 + AT_rich Low_complexity Low_complexity 1 22 0 975 106 0 45 chr3 201835454 201835586 -16201572 + FLAM_C SINE Alu 1 126 -7 828 146 78 112 chr3 201836055 201836197 -16200961 + AluJo SINE Alu 1 135 -177 2089 125 0 0 chr3 201836197 201836484 -16200674 + AluSq SINE Alu 1 287 -26 986 45 20 35 chr3 201836487 201836689 -16200469 + (TAAAA)n Simple_repeat Simple_repeat 1 199 0 2477 59 0 7 chr3 201836917 201837220 -16199938 + AluY SINE Alu 2 302 -9 2078 93 39 7 chr3 201837903 201838182 -16198976 + AluSc SINE Alu 3 290 -19 261 139 0 0 chr3 201838182 201838225 -16198933 + (GA)n Simple_repeat Simple_repeat 1 43 0 416 19 19 0 chr3 201838264 201838317 -16198841 + (GAAA)n Simple_repeat Simple_repeat 4 57 0 264 315 71 45 chr3 201838410 201838543 -16198615 - MIR SINE MIR -56 206 72 230 237 0 0 chr3 201838812 201838841 -16198317 + A-rich Low_complexity Low_complexity 1 29 -30 2317 83 0 49 chr3 201838841 201839166 -16197992 + AluSc SINE Alu 1 309 0 230 237 0 0 chr3 201839166 201839195 -16197963 + A-rich Low_complexity Low_complexity 28 59 0 183 80 0 0 chr3 201839366 201839391 -16197767 + (T)n Simple_repeat Simple_repeat 1 25 0 775 155 35 0 chr3 201839420 201839536 -16197622 - FLAM_C SINE Alu -22 121 2 831 171 16 153 chr3 201839661 201839788 -16197370 + AluJb SINE Alu 15 73 -239 794 64 0 9 chr3 201839788 201839898 -16197260 + (GAAA)n Simple_repeat Simple_repeat 4 112 0 831 171 16 153 chr3 201839898 201840091 -16197067 + AluJb SINE Alu 73 291 -21 2193 99 3 0 chr3 201840101 201840403 -16196755 + AluSx SINE Alu 1 303 0 1199 149 0 0 chr3 201840412 201840600 -16196558 + AluSg/x SINE Alu 119 306 -4 695 173 0 0 chr3 201840690 201840794 -16196364 + AluJb SINE Alu 201 304 -8 440 227 21 0 chr3 201840847 201840944 -16196214 + MER94 DNA DNA 22 120 -14 489 284 0 9 chr3 201841045 201841161 -16195997 + MIR SINE MIR 56 170 -92 1925 131 6 39 chr3 201841172 201841484 -16195674 + AluJb SINE Alu 4 305 -7 708 163 0 31 chr3 201841513 201841642 -16195516 + FLAM_C SINE Alu 11 135 -8 996 189 0 11 chr3 201841731 201841911 -16195247 - FRAM SINE Alu -1 175 1 2224 120 3 0 chr3 201842187 201842488 -16194670 - AluSx SINE Alu -10 302 1 981 212 50 0 chr3 201843714 201843912 -16193246 + MER3 DNA MER1_type 1 208 -1 2243 123 0 0 chr3 201843944 201844254 -16192904 + AluSx SINE Alu 1 310 -2 850 216 106 34 chr3 201844440 201844676 -16192482 + MIR SINE MIR 1 253 -9 181 214 90 90 chr3 201844718 201844807 -16192351 - L2 LINE L2 -6 3307 3219 825 143 0 0 chr3 201845294 201845413 -16191745 + FLAM_C SINE Alu 1 119 -24 1903 112 3 21 chr3 201845574 201845861 -16191297 - AluSx SINE Alu -30 282 1 307 274 183 11 chr3 201846373 201846548 -16190610 - MIR SINE MIR -56 206 2 1714 157 32 4 chr3 201846621 201846902 -16190256 - AluJo SINE Alu -23 289 1 36 16 0 48 chr3 201846915 201846977 -16190181 + AT_rich Low_complexity Low_complexity 1 59 0 249 33 0 0 chr3 201847359 201847389 -16189769 + (TTTTC)n Simple_repeat Simple_repeat 4 33 0 2163 92 53 0 chr3 201848997 201849281 -16187877 - AluSx SINE Alu -13 299 1 239 221 0 13 chr3 201849443 201849520 -16187638 - L1ME4a LINE L1 -7 6114 6039 22 0 0 0 chr3 201849591 201849613 -16187545 + AT_rich Low_complexity Low_complexity 1 22 0 2135 114 3 16 chr3 201851113 201851478 -16185680 - AluSx SINE Alu 0 361 1 320 308 128 8 chr3 201852240 201852373 -16184785 + MIR3 SINE MIR 12 160 -48 211 269 0 26 chr3 201852591 201852669 -16184489 + L3 LINE CR1 787 862 -715 3949 115 2 22 chr3 201852749 201853287 -16183871 + MER1A DNA MER1_type 1 527 0 226 229 86 29 chr3 201854156 201854226 -16182932 + MIR SINE MIR 80 153 -109 563 238 93 42 chr3 201854485 201854678 -16182480 - MER63A DNA MER1_type -7 203 1 1158 161 0 21 chr3 201854807 201854993 -16182165 - AluJb SINE Alu -14 298 117 495 350 111 41 chr3 201855219 201856006 -16181152 + L2 LINE L2 2315 3254 -18 207 0 0 0 chr3 201856034 201856057 -16181101 + (TCTCCC)n Simple_repeat Simple_repeat 4 26 0 2066 130 0 3 chr3 201856062 201856355 -16180803 - AluSg SINE Alu -13 297 6 200 309 106 46 chr3 201856515 201856732 -16180426 + L2 LINE L2 2748 2977 -337 2336 90 0 35 chr3 201857051 201857362 -16179796 + AluSx SINE Alu 1 300 -12 538 239 141 37 chr3 201857755 201857777 -16179381 - L1ME4a LINE L1 -1 6120 6102 2402 91 0 0 chr3 201857777 201858075 -16179083 + AluSp SINE Alu 1 298 -15 538 239 141 37 chr3 201858075 201858407 -16178751 - L1ME4a LINE L1 -19 6102 5729 239 271 70 8 chr3 201859323 201859452 -16177706 + Charlie7 DNA MER1_type 2435 2571 -41 923 192 0 0 chr3 201859452 201859603 -16177555 + FRAM SINE Alu 1 151 -25 24 0 0 0 chr3 201859617 201859641 -16177517 + AT_rich Low_complexity Low_complexity 1 24 0 2051 129 14 0 chr3 201859902 201860189 -16176969 + AluSx SINE Alu 5 295 -17 2142 142 40 0 chr3 201860289 201860612 -16176546 - L1PA13 LINE L1 -3 6160 5825 1104 226 128 32 chr3 201860644 201860827 -16176331 - L1ME4a LINE L1 0 6121 5957 1940 141 146 11 chr3 201860827 201861204 -16175954 - MSTA LTR MaLR 0 428 1 1104 226 128 32 chr3 201861204 201861512 -16175646 - L1ME4a LINE L1 -164 5957 5583 274 161 11 92 chr3 201862075 201862162 -16174996 - L1ME4a LINE L1 -45 6076 5997 2410 82 3 3 chr3 201862166 201862470 -16174688 - AluSx SINE Alu -8 304 1 245 282 31 31 chr3 201863901 201864064 -16173094 + L1M4 LINE L1 4882 5044 -1102 2177 107 0 28 chr3 201864974 201865291 -16171867 - AluSg SINE Alu -2 308 1 313 254 95 16 chr3 201866155 201866281 -16170877 - L1ME4a LINE L1 -1 6120 5985 713 271 29 9 chr3 201866433 201866643 -16170515 + MIR SINE MIR 47 260 -2 2425 87 10 3 chr3 201866701 201867011 -16170147 + AluSx SINE Alu 1 312 0 1788 164 29 26 chr3 201867991 201868301 -16168857 + AluJb SINE Alu 1 311 -1 212 286 32 0 chr3 201869690 201869753 -16167405 + CT-rich Low_complexity Low_complexity 2 66 0 472 267 68 68 chr3 201871021 201871212 -16165946 + MIR SINE MIR 2 192 -70 207 347 130 46 chr3 201871338 201871554 -16165604 - L2 LINE L2 -10 3262 3029 1938 115 56 24 chr3 201871601 201871740 -16165418 + AluSx SINE Alu 1 134 -178 2280 98 10 0 chr3 201871740 201872037 -16165121 + AluSx SINE Alu 1 300 -12 1938 115 56 24 chr3 201872037 201872185 -16164973 + AluSx SINE Alu 134 297 -15 509 198 30 0 chr3 201872199 201872300 -16164858 + U13 snRNA snRNA 1 104 0 2274 108 3 3 chr3 201872509 201872814 -16164344 - AluSx SINE Alu -7 305 1 1936 98 0 8 chr3 201872826 201873082 -16164076 - AluSg1 SINE Alu -18 291 38 208 250 0 0 chr3 201873366 201873414 -16163744 + (TATATG)n Simple_repeat Simple_repeat 6 53 0 2171 136 0 3 chr3 201874033 201874343 -16162815 + AluSx SINE Alu 1 309 -3 22 35 0 0 chr3 201874682 201874711 -16162447 + AT_rich Low_complexity Low_complexity 1 29 0 1305 172 0 14 chr3 201874767 201874988 -16162170 + AluJb SINE Alu 87 304 -8 1299 63 0 0 chr3 201876239 201876398 -16160760 - AluY SINE Alu -15 296 138 562 196 270 0 chr3 201876898 201877061 -16160097 - MER46C DNA MER2_type 0 338 132 292 129 21 151 chr3 201877144 201877189 -16159969 - MIR SINE MIR -116 146 117 2355 96 0 10 chr3 201877189 201877503 -16159655 + AluSq SINE Alu 1 311 -2 292 129 21 151 chr3 201877503 201877550 -16159608 - MIR SINE MIR -145 117 66 877 250 128 10 chr3 201878613 201878925 -16158233 - L1ME4a LINE L1 -2204 5604 5256 286 272 109 40 chr3 201878956 201879070 -16158088 - L1ME4a LINE L1 -944 5202 5097 2386 95 0 3 chr3 201879070 201879375 -16157783 + AluSx SINE Alu 1 304 -8 286 272 109 40 chr3 201879375 201879635 -16157523 - L1ME4a LINE L1 -1049 5097 4802 543 276 99 41 chr3 201880094 201880337 -16156821 + MIR SINE MIR 6 262 0 1080 200 0 31 chr3 201880465 201880593 -16156565 + AluJo SINE Alu 1 121 -191 194 0 0 37 chr3 201880593 201880620 -16156538 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 1080 200 0 31 chr3 201880620 201880716 -16156442 + AluJo SINE Alu 121 218 -94 349 118 0 0 chr3 201880716 201880767 -16156391 + FLAM_A SINE Alu 83 133 0 2543 60 0 3 chr3 201880788 201881090 -16156068 + AluY SINE Alu 1 301 -10 1956 114 4 4 chr3 201881598 201881878 -16155280 + AluSp SINE Alu 34 313 0 1872 139 6 41 chr3 201882199 201882515 -16154643 - AluJb SINE Alu -7 305 1 1351 238 73 67 chr3 201882515 201883011 -16154147 - MLT1H LTR MaLR -30 519 21 2048 81 0 4 chr3 201883503 201883762 -16153396 + AluSc SINE Alu 35 292 -17 664 71 0 79 chr3 201883763 201884356 -16152802 + (TA)n Simple_repeat Simple_repeat 1 546 0 720 54 0 79 chr3 201884369 201884650 -16152508 + (TA)n Simple_repeat Simple_repeat 1 258 0 1219 85 0 0 chr3 201884803 201884956 -16152202 + AluSg/x SINE Alu 148 300 -12 2260 69 38 7 chr3 201886012 201886303 -16150855 + AluSg1 SINE Alu 2 301 -8 962 62 47 0 chr3 201886313 201886441 -16150717 - L1P2 LINE L1 -687 5467 5334 1371 73 28 0 chr3 201886439 201886614 -16150544 + L1PA7 LINE L1 5972 6154 0 2083 71 85 0 chr3 201886895 201887177 -16149981 - AluY SINE Alu -5 306 1 331 140 0 0 chr3 201887278 201887335 -16149823 + HERVK11 LTR ERVK 279 335 -7618 21 36 0 0 chr3 201889053 201889081 -16148077 + AT_rich Low_complexity Low_complexity 1 28 0 8508 49 1 0 chr3 201889268 201890233 -16146925 - LTR5 LTR ERVK -3 966 1 414 84 11 168 chr3 201890233 201890328 -16146830 - SVA Other Other -450 936 857 58908 14 1 2 chr3 201890328 201896844 -16140314 - HERVK LTR ERVK -95 7148 637 665 53 0 85 chr3 201896990 201897419 -16139739 + (TA)n Simple_repeat Simple_repeat 1 392 0 526 71 0 86 chr3 201897434 201897631 -16139527 + (TA)n Simple_repeat Simple_repeat 1 180 0 2271 102 3 7 chr3 201898208 201898512 -16138646 - AluSx SINE Alu -9 303 1 245 156 0 47 chr3 201898846 201898910 -16138248 + GA-rich Low_complexity Low_complexity 5 65 0 1913 190 37 0 chr3 201898931 201899283 -16137875 - MLT1A1 LTR MaLR 0 365 1 312 336 27 13 chr3 201899483 201899632 -16137526 + MIR SINE MIR 41 191 -71 2079 137 3 0 chr3 201899698 201899997 -16137161 + AluSx SINE Alu 1 300 -12 1954 161 59 54 chr3 201901015 201901067 -16136091 - L1MB4 LINE L1 -8 6172 6122 2172 105 3 10 chr3 201901067 201901361 -16135797 - AluSq SINE Alu -21 292 1 1954 161 59 54 chr3 201901361 201901738 -16135420 - L1MB4 LINE L1 -58 6122 5742 914 149 32 0 chr3 201901752 201901906 -16135252 - MER44D DNA MER2_type 0 605 575 25 0 0 0 chr3 201901914 201901939 -16135219 + AT_rich Low_complexity Low_complexity 1 25 0 303 119 0 0 chr3 201902811 201902853 -16134305 - 5S rRNA rRNA -79 42 1 2065 121 0 0 chr3 201903157 201903470 -16133688 - AluSq SINE Alu 0 317 5 701 186 28 3 chr3 201903510 201903686 -16133472 + L1M2 LINE L1 5485 5665 -545 2344 107 0 0 chr3 201904102 201904411 -16132747 + AluSx SINE Alu 1 309 -3 1936 143 0 14 chr3 201905613 201905906 -16131252 + AluSx SINE Alu 1 289 -23 2064 129 40 35 chr3 201905940 201906313 -16130845 + THE1C LTR MaLR 1 375 0 1821 164 39 33 chr3 201906320 201906597 -16130561 - MLT1A1 LTR MaLR -3 362 81 2027 124 21 0 chr3 201906597 201906887 -16130271 - AluSg SINE Alu -14 296 1 1821 164 39 33 chr3 201906887 201906969 -16130189 - MLT1A1 LTR MaLR -284 81 1 2423 106 0 0 chr3 201907976 201908288 -16128870 - AluSx SINE Alu 0 312 1 269 246 157 9 chr3 201908798 201908922 -16128236 + MIR SINE MIR 19 158 -65 2746 136 9 25 chr3 201909075 201909114 -16128044 - MSTA LTR MaLR 0 428 390 2479 86 0 0 chr3 201909114 201909415 -16127743 + AluSc SINE Alu 1 301 -8 2746 136 9 25 chr3 201909415 201909810 -16127348 - MSTA LTR MaLR -38 390 1 277 266 56 42 chr3 201910938 201911081 -16126077 + MIR SINE MIR 13 157 -105 464 204 218 7 chr3 201911293 201911440 -16125718 + MER5A DNA MER1_type 3 180 -9 350 278 0 10 chr3 201912285 201912382 -16124776 - L1MB4 LINE L1 -357 5764 5669 3855 90 6 8 chr3 201912384 201912919 -16124239 - HSMAR2 DNA Mariner -1 1301 768 911 112 8 0 chr3 201912919 201913044 -16124114 - FLAM_C SINE Alu -4 139 14 2601 78 0 0 chr3 201913064 201913372 -16123786 - AluSq SINE Alu -5 308 1 4965 114 26 19 chr3 201913372 201913812 -16123346 - HSMAR2 DNA Mariner -526 776 327 2530 64 0 13 chr3 201913812 201914123 -16123035 - AluSc SINE Alu -2 307 1 4965 114 26 19 chr3 201914123 201914452 -16122706 - HSMAR2 DNA Mariner -975 327 2 244 204 129 21 chr3 201915604 201915653 -16121505 + Charlie7 DNA MER1_type 2509 2551 -61 2237 114 0 10 chr3 201915653 201915960 -16121198 + AluSx SINE Alu 1 304 -8 244 204 129 21 chr3 201915960 201916003 -16121155 + Charlie7 DNA MER1_type 2551 2611 -1 383 214 153 30 chr3 201916057 201916188 -16120970 - MER103 DNA DNA -13 153 7 644 249 89 14 chr3 201916363 201916427 -16120731 + MIR SINE MIR 7 65 -197 2297 100 3 0 chr3 201916427 201916726 -16120432 + AluSg SINE Alu 1 300 -10 644 249 89 14 chr3 201916726 201916874 -16120284 + MIR SINE MIR 65 235 -27 2307 86 3 0 chr3 201917186 201917477 -16119681 + AluSx SINE Alu 5 296 -16 922 143 37 37 chr3 201917562 201917751 -16119407 - L1MB8 LINE L1 0 6178 5990 180 0 0 0 chr3 201917969 201917989 -16119169 + (A)n Simple_repeat Simple_repeat 1 20 0 249 79 0 0 chr3 201918348 201918386 -16118772 - L1MA7 LINE L1 -6 6285 6248 1445 194 80 44 chr3 201919339 201919700 -16117458 - MLT1A2 LTR MaLR 0 374 1 2036 113 58 0 chr3 201920221 201920514 -16116644 + AluSg SINE Alu 1 310 0 510 261 42 0 chr3 201920967 201921109 -16116049 + MIR3 SINE MIR 58 205 -3 1491 169 32 104 chr3 201921279 201921681 -16115477 - MLT1A2 LTR MaLR 0 374 2 2201 129 137 8 chr3 201922253 201922632 -16114526 - MSTA LTR MaLR 0 428 1 1750 157 7 39 chr3 201922808 201923113 -16114045 + AluJo SINE Alu 1 295 -17 699 203 112 103 chr3 201923228 201923417 -16113741 + MIR SINE MIR 7 200 -62 2263 100 0 0 chr3 201923417 201923708 -16113450 + AluY SINE Alu 3 293 -18 699 203 112 103 chr3 201923708 201923760 -16113398 + MIR SINE MIR 200 250 -12 314 355 47 0 chr3 201923822 201923929 -16113229 + L2 LINE L2 3155 3266 -6 225 204 0 0 chr3 201924424 201924468 -16112690 + A-rich Low_complexity Low_complexity 1 44 0 231 36 0 0 chr3 201924764 201924792 -16112366 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2440 76 10 0 chr3 201925321 201925624 -16111534 - AluSq SINE Alu -7 306 1 22 0 0 0 chr3 201926391 201926413 -16110745 + AT_rich Low_complexity Low_complexity 1 22 0 1656 138 86 43 chr3 201926963 201927289 -16109869 + Tigger7 DNA MER2_type 1 340 -393 1028 119 0 13 chr3 201927288 201927439 -16109719 + Tigger7 DNA MER2_type 2339 2487 0 * 1750 148 11 11 chr3 201928800 201929078 -16108080 - AluJo SINE Alu -34 278 1 426 244 22 0 chr3 201929413 201929503 -16107655 - MER117 DNA MER1_type -82 115 24 2348 107 0 0 chr3 201932598 201932908 -16104250 - AluSg SINE Alu 0 310 1 2140 111 14 0 chr3 201933636 201933939 -16103219 + AluSx SINE Alu 1 307 0 301 219 59 34 chr3 201934198 201934317 -16102841 - MER5B DNA MER1_type -16 162 41 327 257 19 9 chr3 201934211 201934316 -16102842 + MER5A DNA MER1_type 43 148 -41 203 250 47 16 chr3 201935005 201935069 -16102089 + MER5A DNA MER1_type 26 91 -98 * 471 202 64 0 chr3 201935020 201935129 -16102029 - MER5B DNA MER1_type -31 147 32 2198 129 3 0 chr3 201935143 201935453 -16101705 - AluSx SINE Alu -1 311 1 281 287 30 10 chr3 201935540 201935641 -16101517 + MER5A DNA MER1_type 48 150 -39 * 487 252 21 35 chr3 201935552 201935695 -16101463 - MER5A DNA MER1_type -48 141 1 648 265 58 0 chr3 201936423 201936612 -16100546 - MIR SINE MIR -16 246 47 1980 148 0 10 chr3 201937056 201937354 -16099804 - AluJo SINE Alu -17 295 1 395 238 238 18 chr3 201937854 201938018 -16099140 - MIR SINE MIR -35 227 28 259 246 111 32 chr3 201938301 201938427 -16098731 - MIR SINE MIR -19 243 108 509 276 81 27 chr3 201938755 201938940 -16098218 + MIR3 SINE MIR 9 203 -5 2255 78 0 26 chr3 201939587 201939895 -16097263 + AluSx SINE Alu 1 300 -12 313 316 121 23 chr3 201941111 201941285 -16095873 - MIR SINE MIR -62 200 10 181 295 18 89 chr3 201941286 201941398 -16095760 - L2 LINE L2 -227 3045 2942 211 309 91 9 chr3 201941475 201941585 -16095573 - L2 LINE L2 -527 2787 2669 2043 115 0 13 chr3 201941635 201941940 -16095218 + AluSq SINE Alu 1 301 -12 552 264 138 27 chr3 201942218 201942479 -16094679 + L1MC4a LINE L1 5625 5914 -1894 24 0 0 0 chr3 201942539 201942563 -16094595 + AT_rich Low_complexity Low_complexity 1 24 0 483 220 53 20 chr3 201942593 201942743 -16094415 + L1MC5 LINE L1 7729 7883 -78 228 292 126 83 chr3 201942898 201943175 -16093983 + L2 LINE L2 2981 3269 -3 2134 103 0 0 chr3 201943796 201944088 -16093070 - AluY SINE Alu -19 292 1 380 102 0 0 chr3 201944231 201944290 -16092868 + (TTTA)n Simple_repeat Simple_repeat 3 61 0 625 200 8 0 chr3 201944321 201944441 -16092717 - AluJb SINE Alu -187 125 5 529 256 109 26 chr3 201945882 201946038 -16091120 - L2 LINE L2 -1 3271 3103 2521 105 21 16 chr3 201946056 201946429 -16090729 + THE1C LTR MaLR 1 375 0 2023 113 14 0 chr3 201946658 201946950 -16090208 + AluSx SINE Alu 1 296 -16 303 321 108 45 chr3 201947171 201947296 -16089862 - L2 LINE L2 -5 3267 3151 2095 125 0 0 chr3 201947296 201947593 -16089565 + AluSx SINE Alu 1 297 -15 303 321 108 45 chr3 201947593 201947754 -16089404 - L2 LINE L2 -121 3151 2963 2015 108 34 0 chr3 201948200 201948497 -16088661 + AluSg1 SINE Alu 2 308 -1 1935 103 4 0 chr3 201948727 201948990 -16088168 + AluSx SINE Alu 1 264 -48 182 323 46 0 chr3 201949956 201950021 -16087137 - MIR SINE MIR -77 185 118 1884 137 23 13 chr3 201950642 201950941 -16086217 + AluSx SINE Alu 1 302 -10 1950 106 3 20 chr3 201950983 201951284 -16085874 + AluSx SINE Alu 1 296 -16 218 184 0 0 chr3 201951483 201951521 -16085637 + CT-rich Low_complexity Low_complexity 1 38 0 360 163 185 0 chr3 201951568 201951660 -16085498 - L1MC4 LINE L1 -188 7854 7746 820 116 11 159 chr3 201951668 201951857 -16085301 + AluSx SINE Alu 5 165 -147 27 0 0 0 chr3 201952103 201952130 -16085028 + AT_rich Low_complexity Low_complexity 1 27 0 1116 150 110 113 chr3 201952130 201952430 -16084728 - AluJo SINE Alu -3 299 1 400 121 16 0 chr3 201952885 201952954 -16084204 - Alu SINE Alu 0 302 240 311 341 85 9 chr3 201953040 201953251 -16083907 - MIR SINE MIR -16 246 20 2184 98 0 0 chr3 201953553 201953849 -16083309 - AluSx SINE Alu -11 301 6 850 187 22 33 chr3 201953971 201954126 -16083032 + L1MC4 LINE L1 6769 6923 -1119 2139 108 3 0 chr3 201954126 201954421 -16082737 + AluSc SINE Alu 1 296 -13 850 187 22 33 chr3 201954421 201954447 -16082711 + L1MC4 LINE L1 6923 6948 -1094 * 2230 164 30 21 chr3 201954422 201954824 -16082334 + L1MB2 LINE L1 5419 5827 -344 1781 85 0 4 chr3 201954824 201955059 -16082099 + AluSg SINE Alu 1 234 -76 254 105 0 0 chr3 201955059 201955097 -16082061 - L1MA7 LINE L1 -55 6236 6199 342 207 9 18 chr3 201955165 201955276 -16081882 + GA-rich Low_complexity Low_complexity 3 112 0 315 320 48 24 chr3 201956081 201956206 -16080952 + L2 LINE L2 2985 3112 -160 25 31 0 0 chr3 201956366 201956398 -16080760 + AT_rich Low_complexity Low_complexity 1 32 0 1889 114 6 70 chr3 201956581 201956896 -16080262 - AluSx SINE Alu -17 295 1 1684 148 35 14 chr3 201956925 201957208 -16079950 + AluJo SINE Alu 3 291 -21 2002 147 0 0 chr3 201957218 201957525 -16079633 + AluSx SINE Alu 3 309 -3 26 0 0 0 chr3 201957837 201957863 -16079295 + AT_rich Low_complexity Low_complexity 1 26 0 550 252 8 8 chr3 201957899 201958030 -16079128 - MIR SINE MIR -109 153 23 504 229 0 10 chr3 201958770 201958866 -16078292 - MER5B DNA MER1_type -82 96 2 2166 102 6 13 chr3 201959330 201959645 -16077513 - AluSq SINE Alu 0 313 1 34 42 0 0 chr3 201959736 201959784 -16077374 + AT_rich Low_complexity Low_complexity 1 48 0 1914 133 3 10 chr3 201959786 201960088 -16077070 - AluJb SINE Alu -11 301 2 2364 83 3 3 chr3 201960619 201960932 -16076226 + AluSq SINE Alu 1 313 0 295 275 123 76 chr3 201960980 201961151 -16076007 + MER5A DNA MER1_type 11 189 0 1971 131 6 10 chr3 201961304 201961617 -16075541 + AluJo SINE Alu 1 312 0 322 271 0 42 chr3 201961884 201962002 -16075156 + HAL1b LINE L1 794 906 -442 2333 93 0 0 chr3 201962262 201962572 -16074586 - AluSx SINE Alu -2 310 1 1340 215 108 42 chr3 201962792 201963216 -16073942 - LTR16B LTR ERVL -12 452 1 2138 92 10 3 chr3 201963337 201963641 -16073517 + AluSq SINE Alu 1 306 -7 2284 87 7 0 chr3 201963741 201964040 -16073118 + AluSc SINE Alu 1 301 -8 386 272 0 22 chr3 201964041 201964133 -16073025 + L1MC4 LINE L1 6614 6703 -1339 * 388 303 0 0 chr3 201964106 201964195 -16072963 - L1MC4 LINE L1 -1340 6702 6614 381 255 0 43 chr3 201964153 201964247 -16072911 + L1MC4 LINE L1 6614 6703 -1339 * 351 250 43 43 chr3 201964199 201964291 -16072867 - L1MC4 LINE L1 -1339 6703 6612 * 1875 145 7 0 chr3 201964902 201965198 -16071960 + AluJb SINE Alu 1 298 -14 209 351 14 0 chr3 201965311 201965385 -16071773 - MIR SINE MIR -94 114 40 2164 113 0 0 chr3 201965823 201966125 -16071033 + AluSx SINE Alu 1 302 -10 266 87 22 0 chr3 201966292 201966338 -16070820 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 270 292 159 61 chr3 201966764 201967028 -16070130 - L2 LINE L2 -21 3292 3003 2272 100 0 0 chr3 201967105 201967416 -16069742 + AluSx SINE Alu 1 311 -1 1635 150 11 17 chr3 201967427 201967714 -16069444 + AluSx SINE Alu 1 285 -27 771 211 16 58 chr3 201968407 201968597 -16068561 + MER91B DNA MER1_type 9 190 0 2295 88 0 0 chr3 201968637 201968932 -16068226 - AluSc SINE Alu -14 295 1 981 84 0 0 chr3 201968934 201969065 -16068093 - AluSp SINE Alu -181 132 2 625 247 65 6 chr3 201969065 201969235 -16067923 + MIR SINE MIR 37 216 -46 218 307 139 0 chr3 201969539 201969640 -16067518 + MIR SINE MIR 98 212 -50 26 0 0 0 chr3 201970162 201970188 -16066970 + AT_rich Low_complexity Low_complexity 1 26 0 2191 105 0 0 chr3 201970188 201970494 -16066664 - AluSx SINE Alu 0 312 7 1522 137 69 11 chr3 201970500 201970762 -16066396 - AluJb SINE Alu -19 293 17 423 256 11 11 chr3 202021073 202021163 -16015995 - L2 LINE L2 -4 3268 3179 207 0 0 0 chr3 202021271 202021294 -16015864 + (T)n Simple_repeat Simple_repeat 1 23 0 2288 90 0 0 chr3 202021569 202021881 -16015277 + AluSx SINE Alu 1 312 0 206 306 20 41 chr3 202022409 202022507 -16014651 + L2 LINE L2 3176 3271 -1 246 302 142 19 chr3 202023596 202023702 -16013456 + MIR3 SINE MIR 6 124 -84 278 150 0 17 chr3 202024189 202024249 -16012909 + (TG)n Simple_repeat Simple_repeat 2 60 0 2249 97 0 0 chr3 202024822 202025120 -16012038 - AluSx SINE Alu -14 298 1 623 199 179 118 chr3 202025351 202025782 -16011376 - L1MC/D LINE L1 -1985 5823 5367 801 142 0 8 chr3 202025790 202025910 -16011248 + FLAM_C SINE Alu 6 124 -19 2219 115 0 6 chr3 202026751 202027065 -16010093 - AluSq SINE Alu -1 312 1 273 291 76 76 chr3 202027264 202027436 -16009722 - MARNA DNA Mariner -15 571 400 959 244 32 0 chr3 202029207 202029424 -16007734 + MER58A DNA MER1_type 1 224 0 2192 92 7 7 chr3 202029528 202029832 -16007326 + AluSc SINE Alu 4 307 -2 2223 112 0 0 chr3 202030671 202030976 -16006182 + AluSx SINE Alu 1 305 -7 535 165 55 18 chr3 202031340 202031449 -16005709 + MER63A DNA MER1_type 1 113 0 23 0 0 0 chr3 202031449 202031472 -16005686 + AT_rich Low_complexity Low_complexity 1 23 0 485 150 12 0 chr3 202031472 202031552 -16005606 - AluSp/q SINE Alu -21 292 212 435 248 37 0 chr3 202031580 202031689 -16005469 + MER63A DNA MER1_type 98 210 0 256 100 0 0 chr3 202031874 202031913 -16005245 - MIR SINE MIR -63 145 106 1994 102 32 0 chr3 202032335 202032620 -16004538 - AluSx SINE Alu -18 294 1 886 155 0 0 chr3 202033211 202033353 -16003805 - FLAM_C SINE Alu -1 142 1 223 274 0 0 chr3 202033361 202033412 -16003746 - MIR SINE MIR -113 149 99 276 236 34 22 chr3 202033876 202033989 -16003169 + (CATATA)n Simple_repeat Simple_repeat 1 114 0 387 294 159 12 chr3 202034479 202034642 -16002516 - MIR3 SINE MIR -11 197 11 222 291 105 91 chr3 202034736 202035097 -16002061 - L2 LINE L2 -23 3249 2884 347 306 89 8 chr3 202035576 202035700 -16001458 + MIR SINE MIR 1 134 -128 1500 245 158 31 chr3 202035864 202036383 -16000775 + MLT1G1 LTR MaLR 3 587 -8 203 151 38 38 chr3 202036579 202036632 -16000526 - L2 LINE L2 -815 2499 2447 1293 189 61 18 chr3 202036809 202037089 -16000069 + AluJo SINE Alu 1 292 -20 182 138 0 0 chr3 202037140 202037169 -15999989 - L2 LINE L2 -1105 2209 2181 2331 84 3 0 chr3 202038056 202038376 -15998782 + AluSx SINE Alu 1 321 0 471 305 14 7 chr3 202038933 202039074 -15998084 - MIR SINE MIR -118 144 3 579 239 32 0 chr3 202039772 202039927 -15997231 - MIR SINE MIR -96 166 7 265 245 19 0 chr3 202039930 202039983 -15997175 + Charlie1 DNA MER1_type 6 59 -2702 1088 71 0 36 chr3 202041239 202041379 -15995779 + AluSq/x SINE Alu 1 135 -177 2128 123 0 16 chr3 202041379 202041696 -15995462 + AluSx SINE Alu 1 312 0 441 209 36 45 chr3 202042227 202042337 -15994821 - MER5B DNA MER1_type -69 109 1 327 209 0 55 chr3 202042865 202042956 -15994202 + L1ME4a LINE L1 5978 6063 -58 270 240 60 47 chr3 202043256 202043406 -15993752 - L1ME4a LINE L1 -4 6117 5966 43 20 0 0 chr3 202045410 202045460 -15991698 + AT_rich Low_complexity Low_complexity 1 50 0 1764 174 56 6 chr3 202045479 202045801 -15991357 + MER58B DNA MER1_type 4 341 0 264 225 107 29 chr3 202045877 202046025 -15991133 - MIR SINE MIR -56 206 39 267 260 21 10 chr3 202046329 202046425 -15990733 + LTR67 LTR ERVL 432 528 -29 556 173 31 24 chr3 202046595 202046722 -15990436 + MER103 DNA DNA 38 165 -1 30 27 0 0 chr3 202046793 202046830 -15990328 + AT_rich Low_complexity Low_complexity 1 37 0 375 234 71 58 chr3 202046903 202046969 -15990189 + L1ME LINE L1 5523 5587 -534 602 100 0 0 chr3 202046969 202047049 -15990109 - MADE1 DNA Mariner 0 80 1 375 234 71 58 chr3 202047049 202047136 -15990022 + L1ME LINE L1 5587 5678 -443 30 77 0 0 chr3 202047656 202047721 -15989437 + AT_rich Low_complexity Low_complexity 1 65 0 2226 109 17 7 chr3 202047880 202048182 -15988976 + AluSx SINE Alu 1 305 -7 1121 225 13 54 chr3 202048193 202048491 -15988667 + AluJo SINE Alu 1 286 -16 1831 158 30 7 chr3 202048687 202048990 -15988168 + AluJo SINE Alu 1 310 -2 1707 203 7 0 chr3 202049877 202050182 -15986976 - AluJo SINE Alu -4 308 2 2067 119 3 10 chr3 202050290 202050593 -15986565 + AluSx SINE Alu 1 301 -11 271 206 32 0 chr3 202051158 202051221 -15985937 + MLT1K LTR MaLR 524 588 0 490 186 12 111 chr3 202051222 202051394 -15985764 + L2 LINE L2 3159 3313 0 2399 102 0 0 chr3 202051712 202052016 -15985142 - AluSx SINE Alu -8 304 1 2408 94 0 0 chr3 202053448 202053756 -15983402 + AluY SINE Alu 1 308 -3 716 239 94 8 chr3 202053825 202053856 -15983302 + MIR SINE MIR 1 28 -234 2084 104 0 57 chr3 202053856 202054172 -15982986 + AluSg SINE Alu 1 298 -12 716 239 94 8 chr3 202054172 202054374 -15982784 + MIR SINE MIR 28 254 -8 311 268 94 31 chr3 202054961 202055088 -15982070 + L1ME LINE L1 5609 5743 -427 1785 184 0 7 chr3 202055101 202055410 -15981748 + AluJo SINE Alu 6 312 0 285 311 88 44 chr3 202055458 202055776 -15981382 - L2 LINE L2 -738 2576 2245 1005 126 0 0 chr3 202056260 202056403 -15980755 - MER6 DNA MER2_type 0 865 723 991 131 57 143 chr3 202056405 202056649 -15980509 + AluJb SINE Alu 84 306 -6 1566 102 8 13 chr3 202056649 202056885 -15980273 - MER6 DNA MER2_type -146 719 485 1756 124 0 8 chr3 202056894 202057135 -15980023 + AluSx SINE Alu 1 239 -73 341 265 165 35 chr3 202057421 202057561 -15979597 - MER112 DNA MER1_type -34 226 51 180 0 0 0 chr3 202057561 202057581 -15979577 + (TG)n Simple_repeat Simple_repeat 1 20 0 341 265 165 35 chr3 202057581 202057640 -15979518 - MER112 DNA MER1_type -209 51 1 352 241 269 28 chr3 202058130 202058275 -15978883 + MER5A DNA MER1_type 10 189 0 326 242 220 37 chr3 202058428 202058701 -15978457 + L1MC4a LINE L1 5617 5939 -1869 300 330 26 9 chr3 202059357 202059472 -15977686 - MIR SINE MIR -62 146 30 27 0 0 0 chr3 202060088 202060115 -15977043 + AT_rich Low_complexity Low_complexity 1 27 0 222 156 0 0 chr3 202060326 202060371 -15976787 + (TG)n Simple_repeat Simple_repeat 2 46 0 28 29 0 0 chr3 202062468 202062503 -15974655 + AT_rich Low_complexity Low_complexity 1 35 0 2087 119 3 7 chr3 202062507 202062802 -15974356 + AluSx SINE Alu 1 294 -18 249 108 0 0 chr3 202062807 202062844 -15974314 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 202 207 207 0 chr3 202063368 202063426 -15973732 - L2 LINE L2 -18 3254 3185 2278 113 0 0 chr3 202063574 202063875 -15973283 + AluSx SINE Alu 1 301 -11 1390 189 49 26 chr3 202064098 202064362 -15972796 + AluJo SINE Alu 7 276 -36 22 0 0 0 chr3 202064367 202064389 -15972769 + AT_rich Low_complexity Low_complexity 1 22 0 1026 180 12 73 chr3 202064585 202064830 -15972328 - MER106A DNA MER1_type 0 236 7 2343 138 48 11 chr3 202064861 202065295 -15971863 + LTR7 LTR ERV1 1 450 0 912 236 24 9 chr3 202065387 202065599 -15971559 - MER58C DNA MER1_type 0 215 1 1124 182 9 9 chr3 202065661 202065881 -15971277 + L1MB3 LINE L1 5964 6183 0 192 303 136 15 chr3 202065960 202066006 -15971152 - MIR SINE MIR -114 148 109 2122 122 0 3 chr3 202066006 202066301 -15970857 + AluSx SINE Alu 1 294 -18 192 303 136 15 chr3 202066301 202066386 -15970772 - MIR SINE MIR -153 109 1 205 356 0 40 chr3 202066563 202066664 -15970494 + L2 LINE L2 3182 3278 -35 1742 161 32 4 chr3 202066794 202067073 -15970085 + AluJo SINE Alu 1 287 -25 2148 113 23 7 chr3 202067267 202067569 -15969589 - AluSx SINE Alu -5 307 1 598 129 242 0 chr3 202067572 202067696 -15969462 - FAM SINE Alu -14 171 18 2235 134 0 0 chr3 202068284 202068590 -15968568 - AluSx SINE Alu -6 306 1 284 262 28 56 chr3 202069687 202069794 -15967364 + L2 LINE L2 3210 3313 0 521 202 0 19 chr3 202069886 202069990 -15967168 + FLAM_A SINE Alu 22 123 -19 199 208 21 0 chr3 202070059 202070107 -15967051 - L2 LINE L2 -8 3264 3216 952 147 0 0 chr3 202070879 202071015 -15966143 + AluSq/x SINE Alu 1 136 -177 21 36 0 0 chr3 202071015 202071043 -15966115 + AT_rich Low_complexity Low_complexity 1 28 0 2148 105 3 10 chr3 202071043 202071338 -15965820 + AluSg SINE Alu 4 296 -14 299 309 133 22 chr3 202071766 202071947 -15965211 + MIR SINE MIR 20 220 -42 2006 143 3 26 chr3 202072514 202072822 -15964336 - AluJo SINE Alu -11 301 1 306 286 112 56 chr3 202072926 202073104 -15964054 - MIR3 SINE MIR -1 207 20 2804 175 20 37 chr3 202073197 202073451 -15963707 - L1MB3 LINE L1 0 6183 5926 2408 80 0 0 chr3 202073451 202073752 -15963406 - AluY SINE Alu -10 301 1 2804 175 20 37 chr3 202073752 202074092 -15963066 - L1MB3 LINE L1 -257 5926 5599 1956 135 3 22 chr3 202074157 202074475 -15962683 + AluSx SINE Alu 1 312 0 4940 128 37 16 chr3 202074987 202075633 -15961525 + Tigger1 DNA MER2_type 1597 2265 -153 2139 123 3 0 chr3 202075633 202075935 -15961223 + AluY SINE Alu 1 303 -8 4940 128 37 16 chr3 202075935 202076093 -15961065 + Tigger1 DNA MER2_type 2265 2418 0 952 134 94 12 chr3 202076273 202076444 -15960714 - MER5A DNA MER1_type -4 185 1 270 81 0 0 chr3 202076641 202076678 -15960480 + (T)n Simple_repeat Simple_repeat 1 37 0 25 0 0 0 chr3 202077005 202077030 -15960128 + AT_rich Low_complexity Low_complexity 1 25 0 24 53 0 0 chr3 202077864 202077902 -15959256 + AT_rich Low_complexity Low_complexity 1 38 0 2288 85 0 19 chr3 202081053 202081360 -15955798 + AluSq SINE Alu 1 301 -12 416 57 19 0 chr3 202082903 202082956 -15954202 - AluJ/FRAM SINE Alu -33 279 226 842 122 32 0 chr3 202082964 202083087 -15954071 - FLAM_C SINE Alu -5 138 12 1545 193 50 58 chr3 202083218 202083275 -15953883 - L1MB7 LINE L1 -18 6166 6110 2147 133 0 10 chr3 202083275 202083584 -15953574 + AluSx SINE Alu 3 308 -4 1545 193 50 58 chr3 202083584 202083795 -15953363 - L1MB7 LINE L1 -74 6110 5899 1955 133 17 17 chr3 202083795 202084089 -15953069 - AluJo SINE Alu -18 294 1 1545 193 50 58 chr3 202084089 202084218 -15952940 - L1MB7 LINE L1 -285 5899 5771 721 200 0 0 chr3 202084243 202084378 -15952780 - FLAM_A SINE Alu 0 142 8 21 0 0 0 chr3 202084444 202084465 -15952693 + AT_rich Low_complexity Low_complexity 1 21 0 1882 100 4 64 chr3 202085727 202086007 -15951151 - AluSq SINE Alu -50 263 1 848 223 0 0 chr3 202086232 202086398 -15950760 + FRAM SINE Alu 1 166 0 23 54 0 0 chr3 202086404 202086441 -15950717 + AT_rich Low_complexity Low_complexity 1 37 0 181 311 97 0 chr3 202086570 202086673 -15950485 - L2 LINE L2 -1 3312 3200 216 0 0 0 chr3 202086965 202086989 -15950169 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2363 101 10 0 chr3 202087240 202087547 -15949611 + AluSq SINE Alu 1 310 -3 26 0 0 0 chr3 202087913 202087939 -15949219 + AT_rich Low_complexity Low_complexity 1 26 0 1036 222 36 4 chr3 202088165 202088390 -15948768 + Charlie8 DNA MER1_type 1 232 -2185 468 51 0 0 chr3 202088579 202088638 -15948520 + (TC)n Simple_repeat Simple_repeat 2 60 0 26 64 0 0 chr3 202089960 202090007 -15947151 + AT_rich Low_complexity Low_complexity 1 47 0 185 191 0 21 chr3 202090917 202090964 -15946194 + CT-rich Low_complexity Low_complexity 2 47 0 23 0 0 0 chr3 202091998 202092021 -15945137 + AT_rich Low_complexity Low_complexity 1 23 0 199 184 0 0 chr3 202092317 202092355 -15944803 + L2 LINE L2 3213 3250 -22 349 295 77 53 chr3 202093309 202093516 -15943642 + MIR SINE MIR 8 219 -43 29 0 0 0 chr3 202094767 202094796 -15942362 + AT_rich Low_complexity Low_complexity 1 29 0 2356 94 13 0 chr3 202095991 202096300 -15940858 - AluSq SINE Alu 0 313 1 2331 84 3 0 chr3 202096302 202096589 -15940569 - AluSp SINE Alu -25 288 1 341 271 148 35 chr3 202097315 202097374 -15939784 + MER112 DNA MER1_type 1 52 -208 180 0 0 0 chr3 202097374 202097394 -15939764 + (CA)n Simple_repeat Simple_repeat 1 20 0 341 271 148 35 chr3 202097394 202097537 -15939621 + MER112 DNA MER1_type 52 226 -34 577 100 11 33 chr3 202097805 202097895 -15939263 + FLAM_C SINE Alu 24 111 -32 201 154 0 0 chr3 202097897 202097936 -15939222 + T-rich Low_complexity Low_complexity 2 40 0 237 230 200 78 chr3 202098292 202098404 -15938754 - L1ME4a LINE L1 -1 6120 6023 2016 109 42 0 chr3 202098404 202098688 -15938470 + AluSg SINE Alu 1 296 -14 237 230 200 78 chr3 202098688 202098910 -15938248 - L1ME4a LINE L1 -98 6023 5745 872 240 11 6 chr3 202099220 202099403 -15937755 + Tigger7 DNA MER2_type 9 192 -513 2240 102 0 10 chr3 202099403 202099706 -15937452 - AluSg SINE Alu -10 300 1 23 0 0 0 chr3 202099761 202099784 -15937374 + AT_rich Low_complexity Low_complexity 1 23 0 1797 161 14 0 chr3 202099994 202100279 -15936879 - AluSx SINE Alu -19 293 5 1098 167 0 0 chr3 202100313 202100487 -15936671 + AluJb SINE Alu 129 302 -10 2085 121 10 3 chr3 202100619 202100924 -15936234 + AluSx SINE Alu 1 307 -5 2229 108 7 0 chr3 202102473 202102779 -15934379 + AluSq SINE Alu 1 308 -5 2260 104 0 0 chr3 202102790 202103078 -15934080 + AluSx SINE Alu 3 290 -22 8266 136 70 4 chr3 202103761 202105126 -15932032 + Tigger1 DNA MER2_type 1 1455 -963 2074 117 36 0 chr3 202105126 202105407 -15931751 - AluSx SINE Alu -15 297 7 2174 105 27 7 chr3 202105662 202105957 -15931201 + AluSx SINE Alu 1 301 -11 2275 109 3 0 chr3 202107455 202107757 -15929401 - AluSx SINE Alu -9 303 1 267 280 35 54 chr3 202108095 202108236 -15928922 + MIR SINE MIR 11 149 -59 300 259 80 0 chr3 202108303 202108415 -15928743 + MIR3 SINE MIR 63 183 -25 266 351 18 0 chr3 202110008 202110122 -15927036 - L3 LINE CR1 -866 711 596 201 239 0 0 chr3 202111028 202111074 -15926084 + (CA)n Simple_repeat Simple_repeat 2 47 0 1478 170 7 41 chr3 202111295 202111566 -15925592 + AluJo SINE Alu 37 298 -14 2212 104 3 7 chr3 202111695 202112002 -15925156 - AluSq SINE Alu -7 306 1 293 290 10 40 chr3 202112014 202112114 -15925044 - MIR SINE MIR -14 248 152 2195 102 7 10 chr3 202112128 202112423 -15924735 - AluSx SINE Alu -18 294 1 187 313 191 15 chr3 202113520 202113651 -15923507 + MIR SINE MIR 32 185 -77 336 229 28 97 chr3 202113656 202113681 -15923477 - L2 LINE L2 0 3313 3288 2219 116 7 3 chr3 202113681 202113984 -15923174 + AluSx SINE Alu 1 304 -8 336 229 28 97 chr3 202113984 202114102 -15923056 - L2 LINE L2 -25 3288 3180 2282 117 0 3 chr3 202114522 202114829 -15922329 + AluSx SINE Alu 1 306 -6 426 247 0 35 chr3 202114988 202115158 -15922000 + G-rich Low_complexity Low_complexity 1 164 0 241 194 56 0 chr3 202115180 202115252 -15921906 + GA-rich Low_complexity Low_complexity 1 76 0 303 269 20 42 chr3 202115752 202115905 -15921253 + L1ME4a LINE L1 4904 5051 -1095 1127 143 30 0 chr3 202115905 202116073 -15921085 + FAM SINE Alu 1 173 -2 303 269 20 42 chr3 202116073 202116087 -15921071 + L1ME4a LINE L1 5051 5064 -1082 373 252 109 17 chr3 202116204 202116323 -15920835 + L1ME4a LINE L1 5558 5687 -2121 832 189 0 19 chr3 202116324 202116483 -15920675 + Tigger1 DNA MER2_type 2 157 -2261 * 1222 143 29 14 chr3 202116476 202116686 -15920472 + Tigger1 DNA MER2_type 2206 2418 0 491 256 79 6 chr3 202116687 202116851 -15920307 + L1ME4a LINE L1 5691 5866 -255 198 0 0 0 chr3 202117063 202117085 -15920073 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 229 49 0 49 chr3 202117084 202117125 -15920033 + (TA)n Simple_repeat Simple_repeat 2 40 0 25 31 0 0 chr3 202117201 202117233 -15919925 + AT_rich Low_complexity Low_complexity 1 32 0 401 257 164 0 chr3 202117404 202117556 -15919602 - MIR SINE MIR -63 199 23 340 286 83 36 chr3 202117718 202117886 -15919272 + L1ME LINE L1 5526 5701 -420 227 245 0 0 chr3 202117921 202117970 -15919188 + (CA)n Simple_repeat Simple_repeat 1 49 0 1001 247 9 9 chr3 202118898 202119121 -15918037 - MER58A DNA MER1_type 0 224 2 2156 113 0 3 chr3 202119137 202119445 -15917713 - AluSx SINE Alu 0 307 1 2213 107 30 0 chr3 202119841 202120139 -15917019 + AluSc SINE Alu 1 307 -2 263 235 0 0 chr3 202120577 202120628 -15916530 - L2 LINE L2 -12 3301 3251 421 269 82 99 chr3 202121500 202121913 -15915245 + L2 LINE L2 2864 3269 -3 419 281 6 49 chr3 202122771 202122935 -15914223 + L1MC5 LINE L1 7744 7900 -61 1019 190 6 0 chr3 202123414 202123588 -15913570 - AluJb SINE Alu -18 294 120 195 139 0 0 chr3 202123588 202123624 -15913534 + (T)n Simple_repeat Simple_repeat 1 36 0 625 308 61 19 chr3 202124534 202124797 -15912361 + MLT1L LTR MaLR 17 290 -325 373 304 16 8 chr3 202124809 202124934 -15912224 + L1M3d LINE L1 413 538 -5765 1644 177 18 7 chr3 202124972 202125255 -15911903 + AluJb SINE Alu 1 286 -26 397 195 0 27 chr3 202125262 202125562 -15911596 + (TA)n Simple_repeat Simple_repeat 1 291 0 305 264 11 22 chr3 202125566 202125645 -15911513 + L1MC4 LINE L1 6614 6693 -1349 351 0 0 0 chr3 202125645 202125684 -15911474 + (GA)n Simple_repeat Simple_repeat 2 40 0 305 264 11 22 chr3 202125684 202125695 -15911463 + L1MC4 LINE L1 6693 6703 -1339 246 348 37 43 chr3 202125736 202125900 -15911258 + L1M3d LINE L1 882 1044 -5259 3574 213 45 20 chr3 202125992 202127024 -15910134 + L1MB2 LINE L1 777 1792 -4521 2384 218 82 9 chr3 202127023 202128031 -15909127 - L1M4 LINE L1 -3301 3081 2006 * 2183 118 10 3 chr3 202128186 202128491 -15908667 - AluSq SINE Alu -6 307 1 9595 165 34 59 chr3 202128517 202129238 -15907920 + L1MB2 LINE L1 3332 4070 -2337 751 172 0 0 chr3 202129238 202129360 -15907798 + FLAM_C SINE Alu 1 122 -21 9595 165 34 59 chr3 202129360 202130749 -15906409 + L1MB2 LINE L1 4070 5493 -914 1115 223 113 33 chr3 202130749 202131112 -15906046 + MSTD LTR MaLR 1 392 -4 9595 165 34 59 chr3 202131112 202131988 -15905170 + L1MB2 LINE L1 5493 6357 -50 2126 125 3 3 chr3 202131988 202132285 -15904873 - AluSx SINE Alu -15 297 1 9595 165 34 59 chr3 202132285 202132334 -15904824 + L1MB2 LINE L1 6357 6406 -1 584 217 149 6 chr3 202132451 202132626 -15904532 + MLT1L LTR MaLR 416 615 0 569 236 8 8 chr3 202132664 202132791 -15904367 + L2 LINE L2 3186 3312 -1 2446 93 0 6 chr3 202132970 202133283 -15903875 - AluSx SINE Alu -1 311 1 204 286 89 0 chr3 202133334 202133390 -15903768 + L2 LINE L2 3119 3179 -93 199 296 42 0 chr3 202133444 202133515 -15903643 + L2 LINE L2 3228 3301 -12 2176 94 35 3 chr3 202133642 202133928 -15903230 + AluSq SINE Alu 1 295 -18 1652 193 24 7 chr3 202134229 202134519 -15902639 - AluJo SINE Alu -16 296 2 2283 112 0 3 chr3 202134678 202134974 -15902184 + AluSx SINE Alu 1 295 -17 852 170 132 11 chr3 202135173 202135355 -15901803 - MER3 DNA MER1_type -1 208 5 2224 98 0 0 chr3 202136944 202137229 -15899929 - AluSx SINE Alu -14 298 14 334 291 47 8 chr3 202137258 202137385 -15899773 - MIR SINE MIR -61 147 16 2849 10 0 0 chr3 202138286 202138588 -15898570 + AluYa5 SINE Alu 1 302 -9 400 217 123 9 chr3 202138607 202138713 -15898445 - L2 LINE L2 -1 3271 3154 371 298 164 0 chr3 202139099 202139270 -15897888 - L1ME LINE L1 -298 5823 5625 2445 88 3 0 chr3 202139690 202139996 -15897162 - AluSp SINE Alu -6 307 1 677 191 56 8 chr3 202140211 202140337 -15896821 - FLAM_A SINE Alu -1 132 1 1887 132 14 21 chr3 202140345 202140633 -15896525 - AluJo SINE Alu -26 286 1 586 290 49 35 chr3 202141599 202141944 -15895214 - L1ME4a LINE L1 -248 5873 5524 25 99 0 0 chr3 202141944 202142025 -15895133 + AT_rich Low_complexity Low_complexity 1 81 0 2151 120 0 0 chr3 202143404 202143695 -15893463 + AluSx SINE Alu 2 292 -20 361 304 15 52 chr3 202144351 202144389 -15892769 - MER5A DNA MER1_type -5 184 146 2062 135 14 0 chr3 202144389 202144685 -15892473 - AluSx SINE Alu -12 300 1 361 304 15 52 chr3 202144685 202144781 -15892377 - MER5A DNA MER1_type -43 146 55 180 323 42 31 chr3 202144699 202144795 -15892363 + MER5A DNA MER1_type 63 159 -30 * 1943 116 3 21 chr3 202145694 202146002 -15891156 - AluSx SINE Alu 0 305 3 1315 135 59 55 chr3 202146348 202146585 -15890573 + AluJo SINE Alu 48 285 -27 989 100 0 7 chr3 202147099 202147239 -15889919 - AluSg/x SINE Alu -10 302 164 1226 96 25 0 chr3 202147239 202147396 -15889762 - AluSg/x SINE Alu -25 287 127 2209 129 3 0 chr3 202147400 202147711 -15889447 - AluSx SINE Alu 0 312 1 189 0 0 0 chr3 202147794 202147815 -15889343 + (TAA)n Simple_repeat Simple_repeat 2 22 0 597 219 113 40 chr3 202148172 202148419 -15888739 - L1MC4a LINE L1 -1813 5995 5731 355 341 60 4 chr3 202149287 202149536 -15887622 + L1ME4a LINE L1 5623 5885 -236 787 171 16 0 chr3 202149694 202149823 -15887335 - AluJo SINE Alu -177 135 5 252 143 0 0 chr3 202149965 202150007 -15887151 + (A)n Simple_repeat Simple_repeat 1 42 0 181 344 114 37 chr3 202150540 202150813 -15886345 + L2 LINE L2 2955 3248 -24 189 171 0 0 chr3 202152209 202152244 -15884914 + (CTATT)n Simple_repeat Simple_repeat 2 36 0 1927 85 20 138 chr3 202152247 202152601 -15884557 - AluYb8 SINE Alu -6 312 1 2400 109 0 0 chr3 202153279 202153590 -15883568 + AluSx SINE Alu 1 311 -1 587 249 118 0 chr3 202154403 202154572 -15882586 - MER5A DNA MER1_type 0 189 1 1706 139 20 0 chr3 202155330 202155581 -15881577 + AluSx SINE Alu 1 256 -56 1644 90 0 0 chr3 202155691 202155891 -15881267 + AluSp SINE Alu 1 200 -113 805 130 8 0 chr3 202155939 202156062 -15881096 + AluSp SINE Alu 181 304 -9 2175 99 7 0 chr3 202156078 202156388 -15880770 + AluY SINE Alu 1 312 0 345 258 138 6 chr3 202156405 202156564 -15880594 - L1ME4a LINE L1 -176 5945 5766 2203 103 0 23 chr3 202156991 202157292 -15879866 - AluSx SINE Alu -18 294 1 2933 121 5 16 chr3 202158122 202158318 -15878840 + MSTB LTR MaLR 1 198 -228 2091 137 0 16 chr3 202158318 202158625 -15878533 + AluJb SINE Alu 2 303 -9 2933 121 5 16 chr3 202158625 202158859 -15878299 + MSTB LTR MaLR 198 426 0 5877 191 84 51 chr3 202158861 202160389 -15876769 + MSTB-int LTR MaLR 3 1580 0 2687 159 14 0 chr3 202160389 202160809 -15876349 + MSTB LTR MaLR 1 426 0 1521 195 25 7 chr3 202161087 202161364 -15875794 + AluJo SINE Alu 1 282 -30 4270 191 87 23 chr3 202161500 202162485 -15874673 + Charlie1 DNA MER1_type 1505 2552 -209 3722 161 58 29 chr3 202162501 202162928 -15874230 - L1PB4 LINE L1 -23 6133 5675 2073 94 4 0 chr3 202162928 202163195 -15873963 - AluSp SINE Alu -7 306 39 3722 161 58 29 chr3 202163195 202163488 -15873670 - L1PB4 LINE L1 -481 5675 5392 703 170 186 0 chr3 202163488 202163682 -15873476 + Charlie1 DNA MER1_type 2532 2761 0 2136 126 3 23 chr3 202163742 202164052 -15873106 - AluSx SINE Alu -8 304 1 2405 57 0 27 chr3 202164192 202164493 -15872665 + AluY SINE Alu 1 293 -18 193 268 56 0 chr3 202164500 202164571 -15872587 + L2 LINE L2 2883 2957 -356 207 282 99 0 chr3 202165663 202165734 -15871424 - MIR3 SINE MIR -32 176 99 183 243 0 0 chr3 202165860 202165897 -15871261 - MIR SINE MIR -7 255 219 2357 67 3 0 chr3 202165974 202166276 -15870882 + AluSp SINE Alu 1 303 0 547 258 32 38 chr3 202166716 202166902 -15870256 - MIR SINE MIR -50 212 28 529 260 40 11 chr3 202167293 202167470 -15869688 + MIR SINE MIR 2 183 -79 2324 101 0 0 chr3 202167648 202167946 -15869212 - AluSx SINE Alu -14 298 1 180 300 0 0 chr3 202168177 202168227 -15868931 + MIR SINE MIR 33 82 -126 1966 130 7 17 chr3 202170425 202170725 -15866433 - AluSx SINE Alu -15 297 1 2315 95 3 0 chr3 202171210 202171506 -15865652 + AluSp SINE Alu 1 297 -16 2200 96 7 7 chr3 202171581 202171886 -15865272 + AluSx SINE Alu 3 307 0 2316 85 0 0 chr3 202172305 202172616 -15864542 + AluSg SINE Alu 1 311 0 2266 70 7 30 chr3 202172908 202173209 -15863949 - AluSp SINE Alu -6 307 14 2476 86 0 0 chr3 202173221 202173525 -15863633 - AluSx SINE Alu -8 304 1 191 186 23 0 chr3 202173534 202173577 -15863581 - MIR SINE MIR -16 246 203 2505 46 0 0 chr3 202174605 202174886 -15862272 + AluY SINE Alu 1 281 -30 202 227 0 15 chr3 202175682 202175748 -15861410 + T-rich Low_complexity Low_complexity 1 65 0 1612 181 0 21 chr3 202175755 202176042 -15861116 - AluJo SINE Alu -31 281 1 1460 191 31 53 chr3 202176056 202176375 -15860783 - AluJo SINE Alu 0 312 1 2240 104 7 10 chr3 202176443 202176750 -15860408 - AluSg SINE Alu -4 306 1 2275 128 0 0 chr3 202176990 202177296 -15859862 - AluSx SINE Alu -6 306 1 538 174 31 0 chr3 202177296 202177394 -15859764 + MER45 DNA AcHobo 1480 1580 -1 322 269 39 0 chr3 202178011 202178115 -15859043 + L1ME3A LINE L1 6055 6162 -8 255 225 261 9 chr3 202178118 202178229 -15858929 - L1ME4a LINE L1 -14 6107 5969 2062 128 7 3 chr3 202178246 202178542 -15858616 + AluSx SINE Alu 1 297 -15 243 229 16 0 chr3 202178635 202178696 -15858462 - L1ME4a LINE L1 -334 5787 5726 2031 151 0 3 chr3 202181117 202181422 -15855736 + AluSx SINE Alu 1 304 -8 2421 63 0 13 chr3 202181714 202182016 -15855142 + AluY SINE Alu 1 298 -13 2111 78 3 99 chr3 202182776 202183109 -15854049 - AluSq SINE Alu -12 301 1 231 259 0 62 chr3 202184341 202184422 -15852736 + MIR SINE MIR 117 192 -70 1035 268 169 17 chr3 202184587 202185001 -15852157 + MLT1F LTR MaLR 16 492 -50 769 191 0 22 chr3 202185004 202185177 -15851981 + FLAM_A SINE Alu 1 170 0 2270 105 3 7 chr3 202185199 202185504 -15851654 + AluSx SINE Alu 1 304 -8 249 288 109 23 chr3 202186087 202186299 -15850859 - MIR SINE MIR -9 253 17 1732 144 37 17 chr3 202186539 202186838 -15850320 + AluJb SINE Alu 1 305 -7 2032 127 17 3 chr3 202186838 202187129 -15850029 + AluSx SINE Alu 1 296 -16 363 198 77 22 chr3 202187854 202187945 -15849213 + AluSp/q SINE Alu 171 257 -46 5691 62 1 38 chr3 202187947 202188046 -15849112 + L1PA6 LINE L1 5399 5500 -654 2415 53 0 17 chr3 202188046 202188346 -15848812 + AluY SINE Alu 2 296 -15 5691 62 1 38 chr3 202188346 202189031 -15848127 + L1PA6 LINE L1 5500 6154 0 1590 140 9 0 chr3 202189047 202189269 -15847889 + AluSx SINE Alu 12 235 -77 231 36 0 0 chr3 202189294 202189322 -15847836 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 6982 61 12 12 chr3 202189369 202189786 -15847372 + L1PA8 LINE L1 5066 5482 -690 2512 73 3 0 chr3 202189786 202190089 -15847069 + AluSp SINE Alu 1 304 -9 6982 61 12 12 chr3 202190089 202190771 -15846387 + L1PA8 LINE L1 5481 6171 -1 2201 123 7 0 chr3 202191649 202191950 -15845208 + AluSx SINE Alu 1 303 -9 2348 79 0 47 chr3 202192420 202192555 -15844603 + AluSx SINE Alu 1 141 -171 2349 95 0 0 chr3 202192555 202192850 -15844308 + AluSg1 SINE Alu 1 295 -14 2348 79 0 47 chr3 202192850 202193032 -15844126 + AluSx SINE Alu 141 303 -9 27 62 0 0 chr3 202193164 202193212 -15843946 + AT_rich Low_complexity Low_complexity 1 48 0 404 157 79 39 chr3 202193349 202193493 -15843665 + AluYb8 SINE Alu 3 133 -175 1694 129 8 16 chr3 202193760 202194040 -15843118 + AluSq SINE Alu 39 316 0 1884 154 0 0 chr3 202194694 202194979 -15842179 - AluJb SINE Alu -22 290 6 2267 93 0 0 chr3 202195350 202195629 -15841529 - AluSg SINE Alu -31 279 1 1800 181 52 3 chr3 202195827 202196175 -15840983 - MLT1A1 LTR MaLR 0 365 1 1484 152 0 126 chr3 202196322 202196664 -15840494 + AluJb SINE Alu 2 300 -2 218 298 0 60 chr3 202196760 202196844 -15840314 + L3 LINE CR1 1496 1574 -3 1800 169 0 7 chr3 202196983 202197273 -15839885 - AluJb SINE Alu -22 290 3 1159 139 0 0 chr3 202197309 202197467 -15839691 + AluSp SINE Alu 134 291 -22 1496 196 29 4 chr3 202197674 202197949 -15839209 - AluJb SINE Alu -30 282 1 300 263 123 35 chr3 202198101 202198215 -15838943 - L2 LINE L2 0 3272 3149 298 326 106 30 chr3 202198362 202198598 -15838560 - MIR SINE MIR -1 261 8 2341 77 10 16 chr3 202198662 202198974 -15838184 - AluSg SINE Alu 0 310 1 1896 188 76 38 chr3 202199524 202199917 -15837241 + MER45B DNA AcHobo 242 649 -391 375 137 0 8 chr3 202199945 202200013 -15837145 + FLAM_A SINE Alu 75 133 0 2168 115 0 10 chr3 202200013 202200308 -15836850 + AluSx SINE Alu 1 292 -20 869 188 81 0 chr3 202200313 202200473 -15836685 + FAM SINE Alu 1 173 -2 1361 161 91 30 chr3 202200474 202200621 -15836537 + MER45B DNA AcHobo 634 771 -810 2283 113 0 0 chr3 202200621 202200923 -15836235 + AluSg SINE Alu 1 302 -8 1361 161 91 30 chr3 202200923 202201073 -15836085 + MER45B DNA AcHobo 771 949 -91 213 296 0 45 chr3 202201490 202201578 -15835580 - L2 LINE L2 -2 3270 3187 1855 173 17 3 chr3 202201675 202201976 -15835182 - AluJb SINE Alu -7 305 1 313 183 17 0 chr3 202202010 202202070 -15835088 + L2 LINE L2 3206 3266 -6 510 296 126 10 chr3 202202556 202202762 -15834396 + MIR SINE MIR 21 250 -12 713 190 161 32 chr3 202204067 202204346 -15832812 - L1MC5 LINE L1 -44 7917 7603 1309 173 12 20 chr3 202204589 202204838 -15832320 - L1MB7 LINE L1 -9 6175 5929 1560 119 5 5 chr3 202205161 202205379 -15831779 - AluSq SINE Alu -95 218 1 1006 128 0 0 chr3 202205383 202205516 -15831642 - AluSq/x SINE Alu -180 133 1 369 165 11 11 chr3 202206229 202206320 -15830838 - L1 LINE L1 -2951 3195 3105 * 853 159 50 20 chr3 202206301 202206482 -15830676 - L1M4 LINE L1 -2260 3886 3705 388 330 52 82 chr3 202206943 202207479 -15829679 + HAL1 LINE L1 828 1347 -1160 983 161 0 29 chr3 202207554 202207728 -15829430 + FRAM SINE Alu 1 162 -14 1230 123 0 3 chr3 202207730 202208055 -15829103 + (GGA)n Simple_repeat Simple_repeat 2 325 0 195 349 101 0 chr3 202208273 202208422 -15828736 - L3b LINE CR1 -318 1265 1102 189 192 58 58 chr3 202208501 202208553 -15828605 + MIR SINE MIR 20 71 -137 702 254 61 0 chr3 202209031 202209212 -15827946 - L1ME LINE L1 -451 5670 5479 430 310 20 96 chr3 202209361 202209706 -15827452 - L2 LINE L2 -9 3263 2945 312 327 52 20 chr3 202211264 202211417 -15825741 + MER117 DNA MER1_type 29 186 -11 327 272 59 29 chr3 202211443 202211579 -15825579 - MIR3 SINE MIR -64 144 5 2484 189 51 6 chr3 202211703 202212158 -15825000 + MER6 DNA MER2_type 1 479 -386 2011 79 105 0 chr3 202212158 202212425 -15824733 - AluSp SINE Alu -18 295 1 2484 189 51 6 chr3 202212425 202212440 -15824718 + MER6 DNA MER2_type 479 492 -373 492 174 0 0 chr3 202212819 202212911 -15824247 + GA-rich Low_complexity Low_complexity 3 94 0 312 286 51 70 chr3 202212919 202212970 -15824188 + HAL1b LINE L1 444 494 -854 2197 113 0 0 chr3 202212970 202213252 -15823906 + AluSx SINE Alu 1 282 -30 732 43 0 0 chr3 202213252 202213344 -15823814 + (TAGA)n Simple_repeat Simple_repeat 1 92 0 312 286 51 70 chr3 202213344 202213606 -15823552 + HAL1b LINE L1 492 752 -596 2192 88 17 20 chr3 202213637 202213954 -15823204 + AluSx SINE Alu 1 312 0 230 203 0 63 chr3 202214825 202214904 -15822254 + GA-rich Low_complexity Low_complexity 4 77 0 2501 88 7 0 chr3 202215036 202215344 -15821814 - AluSg SINE Alu 0 310 1 25 51 0 0 chr3 202216252 202216291 -15820867 + AT_rich Low_complexity Low_complexity 1 39 0 2026 131 24 0 chr3 202216544 202216841 -15820317 - AluSx SINE Alu -6 306 3 2248 96 10 0 chr3 202216863 202217165 -15819993 - AluSp SINE Alu -8 305 1 2146 65 0 18 chr3 202217302 202217578 -15819580 + AluY SINE Alu 35 305 -6 493 112 290 47 chr3 202217937 202218044 -15819114 - FLAM_C SINE Alu 0 133 1 199 73 73 0 chr3 202219181 202219222 -15817936 + C-rich Low_complexity Low_complexity 4 47 0 2034 128 0 10 chr3 202219682 202219986 -15817172 - AluSg SINE Alu 0 310 10 258 257 133 0 chr3 202220452 202220557 -15816601 - MIR SINE MIR -67 195 77 1100 194 30 21 chr3 202221138 202221375 -15815783 - AluJo SINE Alu -9 303 65 1896 103 23 27 chr3 202221562 202221863 -15815295 - AluSq SINE Alu -1 312 13 23 54 0 0 chr3 202273564 202273601 -15763557 + AT_rich Low_complexity Low_complexity 1 37 0 384 22 0 0 chr3 202274512 202274557 -15762601 + (CA)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr3 202276275 202276296 -15760862 + AT_rich Low_complexity Low_complexity 1 21 0 40 37 0 0 chr3 202278047 202278101 -15759057 + GC_rich Low_complexity Low_complexity 1 54 0 31 99 0 0 chr3 202278953 202279054 -15758104 + GC_rich Low_complexity Low_complexity 1 101 0 349 238 21 35 chr3 202279270 202279413 -15757745 + C-rich Low_complexity Low_complexity 4 144 0 24 0 0 0 chr3 202279470 202279494 -15757664 + GC_rich Low_complexity Low_complexity 1 24 0 260 268 29 22 chr3 202279780 202279918 -15757240 + G-rich Low_complexity Low_complexity 4 142 0 280 244 114 23 chr3 202281132 202281263 -15755895 + MIR SINE MIR 44 186 -76 198 0 0 0 chr3 202281821 202281843 -15755315 + (TTG)n Simple_repeat Simple_repeat 3 24 0 2444 130 11 3 chr3 202281928 202282289 -15754869 - THE1B LTR MaLR 0 364 1 184 263 26 0 chr3 202282918 202282956 -15754202 - MIR SINE MIR -62 146 108 1412 169 32 0 chr3 202283045 202283293 -15753865 - AluJo SINE Alu 0 312 57 2037 138 43 12 chr3 202283511 202283838 -15753320 - MER1B DNA MER1_type 0 337 1 266 216 0 0 chr3 202283876 202283927 -15753231 + MIR SINE MIR 90 140 -68 466 143 44 0 chr3 202284137 202284228 -15752930 + L1MB8 LINE L1 6069 6163 -15 638 298 60 63 chr3 202284471 202284773 -15752385 - L2 LINE L2 -45 3227 2927 1435 243 189 40 chr3 202284845 202285603 -15751555 + HAL1 LINE L1 1284 2154 -353 416 261 123 46 chr3 202285608 202285755 -15751403 + L1ME LINE L1 5258 5392 -778 1521 188 0 28 chr3 202285755 202286043 -15751115 + AluJo SINE Alu 1 280 -32 416 261 123 46 chr3 202286043 202286221 -15750937 + L1ME LINE L1 5392 5608 -562 632 276 131 0 chr3 202286248 202286447 -15750711 + L2 LINE L2 1302 1526 -1788 316 254 200 9 chr3 202286508 202286618 -15750540 + L1ME LINE L1 5678 5808 -362 1166 220 4 11 chr3 202286815 202287088 -15750070 - AluJb SINE Alu -30 282 12 2197 115 0 0 chr3 202287270 202287583 -15749575 - AluSp SINE Alu 0 313 1 311 349 0 9 chr3 202287672 202287781 -15749377 - MER5A DNA MER1_type -21 168 61 281 183 17 0 chr3 202287865 202287925 -15749233 - L1MD3 LINE L1 -52 7943 7883 2367 80 3 0 chr3 202287997 202288309 -15748849 + AluSq SINE Alu 1 313 0 3307 236 126 99 chr3 202288319 202288426 -15748732 - L1MC4a LINE L1 -109 7699 7596 2693 16 0 0 chr3 202288426 202288730 -15748428 + AluYa5 SINE Alu 1 304 -7 3307 236 126 99 chr3 202288730 202289361 -15747797 - L1MC4a LINE L1 -212 7596 6983 636 76 109 0 chr3 202289361 202289453 -15747705 - AluSq/x SINE Alu -210 103 2 3307 236 126 99 chr3 202289453 202289818 -15747340 - L1MC4a LINE L1 -825 6983 6629 2078 110 3 29 chr3 202289818 202290127 -15747031 + AluSg1 SINE Alu 1 301 -8 3307 236 126 99 chr3 202290127 202290151 -15747007 - L1MC4a LINE L1 -1179 6629 6607 2077 92 0 27 chr3 202290151 202290475 -15746683 - AluSx SINE Alu 0 316 1 3307 236 126 99 chr3 202290475 202290653 -15746505 - L1MC4a LINE L1 -1201 6607 6435 2321 88 10 0 chr3 202290653 202290960 -15746198 - AluSg SINE Alu 0 310 1 3307 236 126 99 chr3 202290960 202291197 -15745961 - L1MC4a LINE L1 -1373 6435 6206 2328 77 0 6 chr3 202291197 202291509 -15745649 - AluY SINE Alu -1 310 1 3307 236 126 99 chr3 202291509 202292873 -15744285 - L1MC4a LINE L1 -1602 6206 4616 2224 72 39 24 chr3 202292882 202293051 -15744107 + L1PA13 LINE L1 5805 5970 -193 1999 128 20 10 chr3 202293051 202293356 -15743802 + AluSx SINE Alu 1 308 -4 2224 72 39 24 chr3 202293356 202293517 -15743641 + L1PA13 LINE L1 5970 6140 -23 427 142 28 47 chr3 202293533 202293639 -15743519 + HAL1 LINE L1 2269 2372 -135 1886 125 3 54 chr3 202293654 202293986 -15743172 - AluSg SINE Alu 0 317 1 283 254 0 0 chr3 202294028 202294087 -15743071 - LTR33 LTR ERVL 0 521 463 1131 188 85 78 chr3 202294109 202294198 -15742960 - MER2 DNA MER2_type -24 321 234 1453 203 20 23 chr3 202294198 202294499 -15742659 + AluJo SINE Alu 1 300 -12 1131 188 85 78 chr3 202294499 202294597 -15742561 - MER2 DNA MER2_type -111 234 138 1933 89 47 8 chr3 202294597 202294685 -15742473 + AluSx SINE Alu 35 118 -194 2278 108 3 3 chr3 202294685 202294992 -15742166 + AluSc SINE Alu 1 307 -2 1933 89 47 8 chr3 202294992 202295161 -15741997 + AluSx SINE Alu 118 302 -10 1131 188 85 78 chr3 202295161 202295291 -15741867 - MER2 DNA MER2_type -207 138 1 386 242 48 55 chr3 202295291 202295432 -15741726 - LTR33 LTR ERVL -80 441 302 580 320 86 5 chr3 202295472 202295694 -15741464 - LTR33 LTR ERVL -276 245 6 1986 135 34 0 chr3 202295763 202296060 -15741098 + AluSx SINE Alu 4 310 -2 337 237 178 0 chr3 202296433 202296568 -15740590 - MIR SINE MIR -27 235 77 1693 180 27 10 chr3 202296648 202296943 -15740215 + AluJb SINE Alu 1 300 -12 2413 84 3 0 chr3 202297140 202297438 -15739720 + AluSp SINE Alu 1 299 -14 532 247 46 40 chr3 202298075 202298202 -15738956 + MIR SINE MIR 65 195 -67 724 174 25 0 chr3 202298202 202298323 -15738835 + FLAM_C SINE Alu 5 128 -5 532 247 46 40 chr3 202298323 202298369 -15738789 + MIR SINE MIR 195 239 -23 424 286 96 20 chr3 202298500 202298699 -15738459 - L3 LINE CR1 -18 1559 1346 308 316 60 0 chr3 202298703 202298836 -15738322 - MIR3 SINE MIR -1 207 67 192 324 182 7 chr3 202298898 202299046 -15738112 - L3 LINE CR1 -376 1201 1028 2015 135 0 0 chr3 202299123 202299426 -15737732 + AluSq SINE Alu 1 303 0 2154 101 22 0 chr3 202300608 202300886 -15736272 + AluSq SINE Alu 1 284 -29 1031 40 0 0 chr3 202301219 202301343 -15735815 + L1PA3 LINE L1 6031 6154 -1 288 100 0 0 chr3 202301551 202301601 -15735557 - AluY SINE Alu -1 299 250 1900 46 0 5 chr3 202301601 202301820 -15735338 - AluY SINE Alu -93 218 1 1833 129 99 0 chr3 202302794 202303066 -15734092 - AluSg SINE Alu -11 299 1 1663 128 92 0 chr3 202303101 202303350 -15733808 - AluSc SINE Alu -37 272 1 2127 107 7 7 chr3 202303752 202304051 -15733107 + AluSx SINE Alu 1 299 -13 957 251 75 14 chr3 202304064 202304343 -15732815 + L1ME4a LINE L1 5533 5828 -293 2505 57 0 10 chr3 202304564 202304863 -15732295 - AluY SINE Alu -15 296 1 1733 83 13 22 chr3 202304960 202305189 -15731969 - AluSc SINE Alu -18 291 65 579 70 0 0 chr3 202305301 202305372 -15731786 - AluJ/FRAM SINE Alu -16 296 226 259 200 60 70 chr3 202305526 202305626 -15731532 - MIR SINE MIR -147 115 17 24 32 0 0 chr3 202305643 202305674 -15731484 + AT_rich Low_complexity Low_complexity 1 31 0 1683 159 36 42 chr3 202305676 202305817 -15731341 + AluJb SINE Alu 1 141 -171 2363 84 0 10 chr3 202305817 202306128 -15731030 + AluSg SINE Alu 1 308 -2 1683 159 36 42 chr3 202306128 202306295 -15730863 + AluJb SINE Alu 141 307 -5 249 140 0 20 chr3 202306426 202306476 -15730682 + MLT1H LTR MaLR 116 164 -385 2246 116 3 0 chr3 202307436 202307737 -15729421 - AluSg SINE Alu -8 302 1 2245 131 0 0 chr3 202307873 202308185 -15728973 - AluSx SINE Alu 0 312 1 1894 160 3 25 chr3 202308187 202308506 -15728652 - AluSx SINE Alu 0 312 1 2377 84 0 19 chr3 202308553 202308864 -15728294 + AluY SINE Alu 1 305 -6 2432 107 0 0 chr3 202308975 202309284 -15727874 + AluSx SINE Alu 1 309 -3 2288 113 3 0 chr3 202309284 202309583 -15727575 + AluSp SINE Alu 1 301 -12 2063 147 3 6 chr3 202309604 202309735 -15727423 + AluSx SINE Alu 1 131 -181 2488 77 0 0 chr3 202309735 202310034 -15727124 + AluY SINE Alu 1 299 -12 2063 147 3 6 chr3 202310034 202310215 -15726943 + AluSx SINE Alu 131 312 0 270 136 0 0 chr3 202310218 202310262 -15726896 + (GA)n Simple_repeat Simple_repeat 1 44 0 21 36 0 0 chr3 202310329 202310357 -15726801 + AT_rich Low_complexity Low_complexity 1 28 0 2305 261 110 58 chr3 202310417 202311806 -15725352 + L1ME LINE L1 20 1335 -4926 1760 136 16 0 chr3 202311806 202312063 -15725095 + AluSg SINE Alu 35 295 -15 1712 158 0 18 chr3 202312072 202312345 -15724813 + AluJb SINE Alu 14 281 -31 1999 141 3 7 chr3 202312345 202312641 -15724517 - AluSx SINE Alu -16 296 1 2305 261 110 58 chr3 202312641 202312896 -15724262 + L1ME LINE L1 1341 1820 -4441 872 194 6 0 chr3 202312929 202313089 -15724069 - FRAM SINE Alu -16 160 1 2122 129 10 0 chr3 202313119 202313421 -15723737 + AluSx SINE Alu 1 305 -7 233 250 211 7 chr3 202313421 202313573 -15723585 + L1ME LINE L1 1867 2049 -4212 461 313 52 58 chr3 202313738 202314067 -15723091 + L2 LINE L2 2945 3271 -1 2195 122 6 10 chr3 202314218 202314529 -15722629 + AluSx SINE Alu 1 310 -2 2376 195 19 23 chr3 202314543 202315032 -15722126 + L1PA16 LINE L1 4837 5325 -821 2199 125 3 7 chr3 202315032 202315337 -15721821 + AluSx SINE Alu 1 304 -8 2376 195 19 23 chr3 202315337 202315376 -15721782 + L1PA16 LINE L1 5325 5363 -783 1023 208 35 5 chr3 202315381 202315578 -15721580 + AluJo SINE Alu 3 205 -107 4817 119 8 64 chr3 202315594 202315640 -15721518 + L1PA16 LINE L1 5352 5399 -767 2058 150 3 0 chr3 202315640 202315947 -15721211 + AluSx SINE Alu 1 308 -4 4817 119 8 64 chr3 202315947 202316225 -15720933 + L1PA16 LINE L1 5399 5691 -475 2277 97 3 0 chr3 202316225 202316513 -15720645 + AluSq SINE Alu 1 289 -24 4817 119 8 64 chr3 202316513 202316626 -15720532 + L1PA16 LINE L1 5691 5809 -357 2390 100 0 0 chr3 202316626 202316935 -15720223 - AluSq SINE Alu -2 311 3 4817 119 8 64 chr3 202316935 202317350 -15719808 + L1PA16 LINE L1 5809 6158 -8 346 108 14 40 chr3 202317538 202317612 -15719546 + L1MA9 LINE L1 6240 6311 -1 2212 123 0 3 chr3 202317827 202318136 -15719022 + AluSx SINE Alu 1 308 -4 1999 139 17 0 chr3 202318174 202318461 -15718697 + AluSx SINE Alu 1 292 -20 2153 123 0 3 chr3 202318463 202318777 -15718381 + AluSx SINE Alu 1 313 0 1199 154 0 85 chr3 202318791 202318853 -15718305 + AluJo SINE Alu 84 150 -162 2311 103 3 0 chr3 202318853 202319154 -15718004 + AluSg SINE Alu 1 302 -8 1199 154 0 85 chr3 202319154 202319337 -15717821 + AluJo SINE Alu 150 308 -4 224 130 22 0 chr3 202319433 202319479 -15717679 + (TA)n Simple_repeat Simple_repeat 2 48 0 1375 229 108 48 chr3 202319479 202319933 -15717225 - MLT2B1 LTR ERVL -39 481 1 25 31 0 0 chr3 202320175 202320207 -15716951 + AT_rich Low_complexity Low_complexity 1 32 0 1266 255 74 48 chr3 202320336 202320366 -15716792 - LTR16C LTR ERVL -14 477 449 2268 105 3 0 chr3 202320366 202320661 -15716497 - AluSx SINE Alu -16 296 1 1266 255 74 48 chr3 202320661 202321089 -15716069 - LTR16C LTR ERVL -42 449 7 214 309 209 0 chr3 202321129 202321239 -15715919 - MIR SINE MIR -67 195 63 455 303 101 29 chr3 202321597 202321923 -15715235 + L2 LINE L2 2702 3049 -223 2090 129 14 0 chr3 202322077 202322371 -15714787 - AluSx SINE Alu -14 298 1 1079 105 0 0 chr3 202322384 202322517 -15714641 - AluSq/x SINE Alu -179 133 1 22 0 0 0 chr3 202322526 202322548 -15714610 + AT_rich Low_complexity Low_complexity 1 22 0 201 355 57 16 chr3 202322908 202323032 -15714126 - MIR SINE MIR -114 148 20 202 264 0 19 chr3 202323066 202323119 -15714039 + L2 LINE L2 3232 3283 -30 2421 89 0 3 chr3 202323502 202323806 -15713352 + AluSg SINE Alu 1 303 -7 407 306 9 9 chr3 202323810 202323921 -15713237 + L2 LINE L2 3161 3271 -1 1189 233 198 30 chr3 202323997 202324461 -15712697 + MLT1G LTR MaLR 49 590 0 184 29 29 29 chr3 202324506 202324540 -15712618 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2345 87 0 3 chr3 202324550 202324839 -15712319 - AluSp SINE Alu -25 288 1 2352 65 3 62 chr3 202325119 202325441 -15711717 + AluSc SINE Alu 1 303 -6 457 185 0 104 chr3 202325530 202325665 -15711493 - MER112 DNA MER1_type -7 253 133 1573 175 14 38 chr3 202325927 202326029 -15711129 + AluJb SINE Alu 16 119 -193 2359 92 0 13 chr3 202326029 202326343 -15710815 + AluSx SINE Alu 1 310 -2 1573 175 14 38 chr3 202326343 202326532 -15710626 + AluJb SINE Alu 119 300 -12 28 61 0 0 chr3 202326594 202326643 -15710515 + AT_rich Low_complexity Low_complexity 1 49 0 2290 90 0 32 chr3 202326841 202327153 -15710005 - AluSx SINE Alu -10 302 1 2272 106 3 0 chr3 202327153 202327445 -15709713 - AluSq SINE Alu -19 294 1 1291 238 11 4 chr3 202327670 202327951 -15709207 + ERVL LTR ERVL 5151 5433 -331 2291 109 0 0 chr3 202328018 202328312 -15708846 - AluSx SINE Alu -18 294 1 1088 210 148 95 chr3 202328430 202329011 -15708147 - LTR9 LTR ERV1 0 612 1 2256 108 3 3 chr3 202329262 202329557 -15707601 + AluSq SINE Alu 1 295 -18 305 235 0 0 chr3 202329631 202329699 -15707459 + L1MC4 LINE L1 6636 6703 -1339 2231 124 3 0 chr3 202329700 202330006 -15707152 - AluSx SINE Alu -5 307 1 606 155 138 17 chr3 202330403 202330519 -15706639 + AluJo SINE Alu 6 135 -177 1797 175 3 22 chr3 202330519 202330834 -15706324 + AluJb SINE Alu 1 309 -3 392 211 40 150 chr3 202330948 202331067 -15706091 - L1MC4a LINE L1 -1894 5914 5830 2204 101 23 10 chr3 202331067 202331375 -15705783 - AluSx SINE Alu 0 312 1 392 211 40 150 chr3 202331375 202331482 -15705676 - L1MC4a LINE L1 -1978 5830 5713 2225 118 0 0 chr3 202331621 202331918 -15705240 - AluSx SINE Alu -15 297 1 584 132 0 91 chr3 202331918 202332039 -15705119 - FLAM_C SINE Alu -5 138 29 2295 114 0 7 chr3 202332152 202332460 -15704698 - AluSx SINE Alu -5 307 2 2107 116 24 0 chr3 202332469 202332762 -15704396 - AluSq SINE Alu -13 300 1 2243 123 0 0 chr3 202332766 202333067 -15704091 - AluSx SINE Alu -11 301 1 1972 132 0 46 chr3 202333621 202333947 -15703211 + AluSx SINE Alu 1 311 -1 2356 96 0 0 chr3 202333950 202334251 -15702907 + AluSg1 SINE Alu 1 301 -8 346 341 96 23 chr3 202334315 202334845 -15702313 - L2 LINE L2 -661 2653 2085 616 147 32 0 chr3 202335072 202335167 -15701991 - Tigger7 DNA MER2_type 0 2487 2390 * 1259 185 14 91 chr3 202335166 202335329 -15701829 - Tigger7 DNA MER2_type -284 266 133 2335 86 7 7 chr3 202335329 202335632 -15701526 + AluSx SINE Alu 1 303 -9 1259 185 14 91 chr3 202335632 202335755 -15701403 - Tigger7 DNA MER2_type -417 133 2 570 195 70 8 chr3 202335755 202335873 -15701285 + MER74B LTR ERVL 57 182 -440 2454 86 3 0 chr3 202336925 202337229 -15699929 + AluSx SINE Alu 1 305 -7 1004 259 72 27 chr3 202337414 202337580 -15699578 + L1ME LINE L1 5283 5440 -722 1535 158 117 4 chr3 202337580 202337846 -15699312 - AluJb SINE Alu -16 296 1 1004 259 72 27 chr3 202337846 202338192 -15698966 + L1ME LINE L1 5440 5818 -344 2058 111 7 27 chr3 202338221 202338519 -15698639 + AluSx SINE Alu 1 292 -20 2320 79 4 0 chr3 202338521 202338831 -15698327 + AluSg SINE Alu 1 311 0 208 289 48 39 chr3 202339083 202339187 -15697971 + L2 LINE L2 3209 3313 0 245 89 22 22 chr3 202339361 202339406 -15697752 + L1 LINE L1 3930 3974 -2172 3847 172 33 50 chr3 202339409 202339493 -15697665 - L1MB7 LINE L1 -1 6183 6099 2409 84 0 10 chr3 202339493 202339628 -15697530 + AluSq SINE Alu 1 136 -177 2281 88 24 0 chr3 202339628 202339922 -15697236 + AluSx SINE Alu 1 301 -11 2409 84 0 10 chr3 202339922 202340097 -15697061 + AluSq SINE Alu 136 308 -5 3847 172 33 50 chr3 202340097 202340426 -15696732 - L1MB7 LINE L1 -85 6099 5766 1951 107 0 11 chr3 202340426 202340697 -15696461 - AluSx SINE Alu 0 312 45 3847 172 33 50 chr3 202340697 202340895 -15696263 - L1MB7 LINE L1 -418 5766 5566 2179 127 10 3 chr3 202340895 202341203 -15695955 + AluSg SINE Alu 1 310 0 2266 90 0 0 chr3 202341213 202341518 -15695640 + AluSg SINE Alu 1 305 0 3847 172 33 50 chr3 202341518 202341927 -15695231 - L1MB7 LINE L1 -627 5557 5173 2160 123 3 3 chr3 202342277 202342579 -15694579 - AluSx SINE Alu -10 302 1 758 292 45 12 chr3 202342773 202343016 -15694142 - MLT1G LTR MaLR 0 590 340 2061 107 41 3 chr3 202343122 202343412 -15693746 + AluSg SINE Alu 1 301 -9 2373 228 120 34 chr3 202343413 202343446 -15693712 + L1ME3 LINE L1 5360 5389 -773 2128 130 7 0 chr3 202343446 202343746 -15693412 + AluSx SINE Alu 1 302 -10 2373 228 120 34 chr3 202343746 202344107 -15693051 + L1ME3 LINE L1 5389 5718 -444 2271 96 7 0 chr3 202344107 202344409 -15692749 + AluSx SINE Alu 1 304 -8 2373 228 120 34 chr3 202344409 202344555 -15692603 + L1ME3 LINE L1 5718 5850 -312 2135 126 7 7 chr3 202344555 202344865 -15692293 + AluSx SINE Alu 1 310 -2 2129 125 3 0 chr3 202344868 202345164 -15691994 + AluSx SINE Alu 9 305 -7 2373 228 120 34 chr3 202345164 202345371 -15691787 + L1ME3 LINE L1 5851 6160 -2 712 242 143 14 chr3 202346495 202346788 -15690370 - L1ME4a LINE L1 -210 5980 5650 180 265 15 29 chr3 202347009 202347077 -15690081 + MIR SINE MIR 110 176 -86 1467 108 196 8 chr3 202347169 202347261 -15689897 + AluSx SINE Alu 1 74 -238 198 0 0 0 chr3 202347261 202347283 -15689875 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1467 108 196 8 chr3 202347283 202347440 -15689718 + AluSx SINE Alu 74 297 -15 2269 86 0 3 chr3 202347584 202347876 -15689282 + AluSx SINE Alu 1 291 -21 440 241 60 0 chr3 202347902 202348018 -15689140 - L1ME4a LINE L1 -1199 5016 4894 2248 101 0 0 chr3 202348018 202348305 -15688853 + AluSx SINE Alu 1 287 -25 36 0 0 0 chr3 202348305 202348341 -15688817 + AT_rich Low_complexity Low_complexity 1 36 0 2183 107 0 0 chr3 202348350 202348631 -15688527 + AluSx SINE Alu 1 281 -31 284 0 0 27 chr3 202348634 202348671 -15688487 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1629 88 0 5 chr3 202348673 202348878 -15688280 + AluSp SINE Alu 85 288 -25 207 0 0 0 chr3 202348878 202348901 -15688257 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 2159 246 93 28 chr3 202348901 202349549 -15687609 - L1ME4a LINE L1 -1951 4264 3659 2370 46 4 0 chr3 202349549 202349864 -15687294 - AluY SINE Alu 0 316 1 2159 246 93 28 chr3 202349864 202349902 -15687256 - L1ME4a LINE L1 -2556 3659 3625 204 0 83 0 chr3 202349902 202349938 -15687220 + T-rich Low_complexity Low_complexity 2 40 0 2139 113 0 0 chr3 202349947 202350222 -15686936 - AluSx SINE Alu -37 275 1 2159 246 93 28 chr3 202350222 202350312 -15686846 - L1ME4a LINE L1 -2597 3618 3535 1822 161 7 0 chr3 202350312 202350604 -15686554 - AluJb SINE Alu -18 294 1 2159 246 93 28 chr3 202350604 202350629 -15686529 - L1ME4a LINE L1 -2680 3535 3396 670 203 8 8 chr3 202350631 202350759 -15686399 - MER21-int LTR ERV1 -3008 1183 1056 1452 193 14 14 chr3 202350775 202351078 -15686080 - AluJo SINE Alu 0 305 3 2347 283 40 72 chr3 202351078 202351246 -15685912 - L1ME LINE L1 -4773 1623 1451 1620 159 29 64 chr3 202351246 202351560 -15685598 - AluJb SINE Alu 0 312 10 2347 283 40 72 chr3 202351560 202351581 -15685577 - L1ME LINE L1 -4945 1451 1431 257 68 23 0 chr3 202351581 202351625 -15685533 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 2347 283 40 72 chr3 202351625 202352002 -15685156 - L1ME LINE L1 -4965 1431 1044 1660 173 0 56 chr3 202352002 202352325 -15684833 + AluJo SINE Alu 1 305 -7 2043 134 0 13 chr3 202352333 202352639 -15684519 + AluSx SINE Alu 1 302 -10 2347 283 40 72 chr3 202352639 202353702 -15683456 - L1ME LINE L1 -5359 1037 92 353 231 16 138 chr3 202353730 202353856 -15683302 + L1ME1 LINE L1 6029 6130 -32 2072 100 3 53 chr3 202353856 202354179 -15682979 - AluSx SINE Alu 0 308 1 353 231 16 138 chr3 202354179 202354205 -15682953 + L1ME1 LINE L1 6130 6158 -4 30 27 0 0 chr3 202354243 202354280 -15682878 + AT_rich Low_complexity Low_complexity 1 37 0 2291 94 10 0 chr3 202355032 202355340 -15681818 - AluSp SINE Alu -2 311 1 2067 118 3 0 chr3 202355373 202355693 -15681465 + AluSx SINE Alu 1 321 0 2371 98 0 9 chr3 202356085 202356401 -15680757 + AluSq SINE Alu 1 313 0 296 244 50 83 chr3 202356667 202356812 -15680346 - HAL1 LINE L1 -280 2227 2092 2113 142 0 0 chr3 202356812 202357122 -15680036 - AluSx SINE Alu -2 310 1 296 244 50 83 chr3 202357122 202357218 -15679940 - HAL1 LINE L1 -415 2092 1994 1183 201 112 115 chr3 202357292 202357341 -15679817 - HAL1 LINE L1 -789 1718 1670 2183 120 0 0 chr3 202357341 202357633 -15679525 - AluSc SINE Alu -17 292 1 2261 89 14 3 chr3 202357641 202357933 -15679225 - AluSp SINE Alu -16 297 3 1183 201 112 115 chr3 202357933 202358032 -15679126 - HAL1 LINE L1 -844 1663 1565 1601 144 7 57 chr3 202358032 202358360 -15678798 + AluJo SINE Alu 1 313 0 1183 201 112 115 chr3 202358360 202358831 -15678327 - HAL1 LINE L1 -942 1565 1094 1900 157 13 7 chr3 202358831 202359136 -15678022 - AluJb SINE Alu -5 307 1 1816 173 3 3 chr3 202359143 202359443 -15677715 - AluJb SINE Alu -12 300 1 1183 201 112 115 chr3 202359443 202359488 -15677670 - HAL1 LINE L1 -1419 1088 1036 2215 114 7 3 chr3 202359490 202359797 -15677361 - AluSx SINE Alu -4 308 1 226 156 0 0 chr3 202359798 202359843 -15677315 - HAL1 LINE L1 -1427 1080 1036 240 35 0 0 chr3 202359845 202359874 -15677284 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2112 119 0 3 chr3 202359877 202360163 -15676995 - AluSg SINE Alu -25 285 1 2825 205 72 77 chr3 202360173 202360659 -15676499 - L1ME3 LINE L1 -1 6161 5674 1792 172 0 33 chr3 202360659 202360818 -15676340 - AluSx SINE Alu -19 293 147 288 0 0 0 chr3 202360818 202360850 -15676308 + (TTA)n Simple_repeat Simple_repeat 1 32 0 1792 172 0 33 chr3 202360850 202360993 -15676165 - AluSx SINE Alu -165 147 1 2825 205 72 77 chr3 202360993 202361209 -15675949 - L1ME3 LINE L1 -488 5674 5461 1690 191 3 0 chr3 202361209 202361497 -15675661 + AluJb SINE Alu 1 289 -23 2825 205 72 77 chr3 202361497 202361651 -15675507 - L1ME3 LINE L1 -701 5461 5308 1534 181 103 31 chr3 202361652 202362011 -15675147 - MLT1F LTR MaLR 0 542 158 2320 103 3 0 chr3 202362011 202362312 -15674846 - AluSx SINE Alu -10 302 1 892 161 0 0 chr3 202362314 202362444 -15674714 - AluJo/FLAM SINE Alu -172 130 1 2693 180 42 35 chr3 202362482 202362861 -15674297 - L1MB8 LINE L1 -4 6174 5799 342 0 0 0 chr3 202362861 202362899 -15674259 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 2289 68 0 0 chr3 202362899 202363180 -15673978 - AluY SINE Alu -30 281 1 2693 180 42 35 chr3 202363180 202363372 -15673786 - L1MB8 LINE L1 -378 5800 5598 2012 116 7 20 chr3 202363372 202363673 -15673485 - AluSx SINE Alu -7 305 9 184 395 49 0 chr3 202364000 202364162 -15672996 - MIR3 SINE MIR -6 202 33 5996 48 19 0 chr3 202364171 202364907 -15672251 - L1PA5 LINE L1 -3 6151 5402 263 231 110 44 chr3 202365018 202365109 -15672049 - L2 LINE L2 0 3272 3176 240 224 67 90 chr3 202365408 202365542 -15671616 - MIR SINE MIR 0 262 132 262 242 11 11 chr3 202365762 202365857 -15671301 - L1ME3 LINE L1 -938 5208 5114 * 377 299 30 61 chr3 202365852 202365983 -15671175 - HAL1 LINE L1 -1570 937 812 2242 87 20 0 chr3 202365983 202366281 -15670877 + AluY SINE Alu 1 304 -7 377 299 30 61 chr3 202366281 202366346 -15670812 - HAL1 LINE L1 -1695 812 747 1976 133 16 3 chr3 202366471 202366779 -15670379 + AluSx SINE Alu 1 312 0 22 35 0 0 chr3 202366858 202366887 -15670271 + AT_rich Low_complexity Low_complexity 1 29 0 2058 122 7 0 chr3 202367018 202367312 -15669846 + AluSg SINE Alu 1 296 -14 772 217 14 7 chr3 202367320 202367463 -15669695 + FRAM SINE Alu 21 164 -12 789 166 92 6 chr3 202368042 202368205 -15668953 - Tigger2a DNA MER2_type -257 177 1 2108 105 7 0 chr3 202368427 202368704 -15668454 + AluSq SINE Alu 11 289 -24 261 0 0 0 chr3 202368705 202368734 -15668424 + (CA)n Simple_repeat Simple_repeat 1 29 0 665 155 52 9 chr3 202369413 202369529 -15667629 - Charlie3 DNA MER1_type -2450 260 140 280 279 39 58 chr3 202370624 202370728 -15666430 + MIR SINE MIR 10 111 -151 229 171 49 0 chr3 202372517 202372558 -15664600 + MER57A LTR ERV1 295 337 -66 1589 142 131 11 chr3 202373115 202373382 -15663776 + AluSx SINE Alu 1 299 -3 201 39 0 0 chr3 202373861 202373887 -15663271 + (TCC)n Simple_repeat Simple_repeat 2 27 0 249 186 206 72 chr3 202374747 202374844 -15662314 - AluJ SINE Alu -9 293 184 450 156 78 0 chr3 202374844 202374921 -15662237 - AluJ SINE Alu -186 126 44 1612 133 111 0 chr3 202374947 202375218 -15661940 - AluSx SINE Alu -11 301 1 2155 120 0 0 chr3 202375872 202376173 -15660985 + AluY SINE Alu 1 301 -10 828 264 164 11 chr3 202376778 202377047 -15660111 + MER58B DNA MER1_type 7 316 -25 2045 75 25 14 chr3 202377387 202377666 -15659492 + AluSp SINE Alu 1 282 -31 1671 152 14 17 chr3 202378918 202379208 -15657950 + AluJb SINE Alu 1 289 -23 380 217 96 17 chr3 202380443 202380558 -15656600 + MER94 DNA DNA 1 124 -10 274 234 162 42 chr3 202380658 202380825 -15656333 - MIR SINE MIR -30 232 46 24 32 0 0 chr3 202381529 202381560 -15655598 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr3 202387711 202387739 -15649419 + AT_rich Low_complexity Low_complexity 1 28 0 2560 56 3 3 chr3 202392883 202393189 -15643969 + AluY SINE Alu 1 306 -5 2421 75 0 7 chr3 202393198 202393506 -15643652 + AluSg SINE Alu 1 306 -4 1902 132 24 3 chr3 202393722 202394017 -15643141 - AluSx SINE Alu -11 301 1 185 333 127 0 chr3 202394028 202394091 -15643067 + MIR SINE MIR 101 171 -91 600 83 165 37 chr3 202394120 202394229 -15642929 - AluJb SINE Alu -12 300 178 4209 172 46 42 chr3 202394248 202394960 -15642198 - L1MB8 LINE L1 0 6178 5461 2171 87 14 0 chr3 202394960 202395247 -15641911 + AluSp SINE Alu 1 291 -22 4209 172 46 42 chr3 202395247 202395434 -15641724 - L1MB8 LINE L1 -717 5461 5276 36 40 0 0 chr3 202395709 202395759 -15641399 + AT_rich Low_complexity Low_complexity 1 50 0 2292 71 3 0 chr3 202395768 202396065 -15641093 - AluY SINE Alu -13 298 1 442 268 89 57 chr3 202396068 202396225 -15640933 + L2 LINE L2 3110 3271 -1 2207 117 0 0 chr3 202396601 202396910 -15640248 + AluSx SINE Alu 1 309 -3 181 0 33 33 chr3 202397135 202397165 -15639993 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 220 304 43 0 chr3 202397478 202397547 -15639611 + MER91A DNA MER1_type 122 193 -3 1656 175 54 180 chr3 202397681 202398527 -15638631 + LTR41 LTR ERVL 30 769 -4 339 293 47 33 chr3 202398695 202398845 -15638313 - L2 LINE L2 -998 2316 2165 1793 113 0 4 chr3 202399088 202399345 -15637813 + AluSq SINE Alu 55 310 -3 2387 63 0 0 chr3 202399353 202399653 -15637505 + AluY SINE Alu 1 300 -11 2212 76 7 0 chr3 202399980 202400298 -15636860 - AluY SINE Alu 0 311 1 789 158 0 27 chr3 202400349 202400495 -15636663 - FLAM_C SINE Alu -1 142 1 480 264 13 32 chr3 202400518 202400673 -15636485 - L1MC4a LINE L1 -1911 5897 5746 293 282 73 16 chr3 202400673 202400797 -15636361 - L2 LINE L2 -298 3015 2885 744 241 42 23 chr3 202400831 202401056 -15636102 + MIR SINE MIR 5 237 -25 872 279 133 47 chr3 202401069 202401114 -15636044 - L2 LINE L2 -515 2799 2759 2015 107 0 21 chr3 202401114 202401428 -15635730 + AluSx SINE Alu 1 308 0 872 279 133 47 chr3 202401428 202401916 -15635242 - L2 LINE L2 -555 2759 2219 718 265 139 33 chr3 202402064 202402453 -15634705 - L1ME LINE L1 -306 5815 5386 214 326 80 57 chr3 202402494 202402795 -15634363 + L2 LINE L2 2944 3251 -62 735 157 8 30 chr3 202403467 202403601 -15633557 + AluJb SINE Alu 2 132 -180 2367 83 0 0 chr3 202403601 202403902 -15633256 + AluSx SINE Alu 1 301 -11 3550 60 0 7 chr3 202404197 202404648 -15632510 + LTR7 LTR ERV1 1 448 -2 2192 58 0 10 chr3 202404715 202405008 -15632150 - AluY SINE Alu -21 290 1 337 265 95 39 chr3 202405045 202405316 -15631842 - L1ME LINE L1 -1160 4986 4704 1039 214 62 83 chr3 202405326 202405700 -15631458 + MLT2C1 LTR ERVL 13 378 -19 1987 141 70 80 chr3 202405831 202406182 -15630976 - L1MA4 LINE L1 0 6300 5911 533 182 0 0 chr3 202406182 202406270 -15630888 - AluSg/x SINE Alu -20 290 203 1987 141 70 80 chr3 202406270 202406444 -15630714 - L1MA4 LINE L1 -389 5911 5737 1622 158 10 30 chr3 202406481 202406611 -15630547 - AluJb SINE Alu -14 298 167 3624 184 76 36 chr3 202406611 202407052 -15630106 + LTR1B LTR ERV1 1 489 -337 2048 107 0 0 chr3 202407052 202407361 -15629797 + AluSx SINE Alu 1 309 0 3624 184 76 36 chr3 202407361 202407712 -15629446 + LTR1B LTR ERV1 489 825 -1 1622 158 10 30 chr3 202407712 202407885 -15629273 - AluJb SINE Alu -145 167 1 663 184 106 60 chr3 202408040 202408258 -15628900 - MIR SINE MIR -31 231 4 2611 26 0 0 chr3 202408400 202408702 -15628456 - AluY SINE Alu -9 302 1 1572 257 55 11 chr3 202409012 202409482 -15627676 - L1ME3A LINE L1 -5 6165 5675 212 244 0 0 chr3 202409633 202409674 -15627484 + (TG)n Simple_repeat Simple_repeat 2 42 0 564 268 24 40 chr3 202409698 202409736 -15627422 - L1ME4a LINE L1 -201 5920 5883 3346 152 11 59 chr3 202409736 202410379 -15626779 - LTR9 LTR ERV1 0 612 1 564 268 24 40 chr3 202410379 202410590 -15626568 - L1ME4a LINE L1 -238 5883 5675 2327 70 0 3 chr3 202411143 202411444 -15625714 - AluY SINE Alu -11 300 1 223 324 129 14 chr3 202411543 202411580 -15625578 + L2 LINE L2 1671 1702 -1612 1910 141 3 0 chr3 202411580 202411870 -15625288 + AluSx SINE Alu 1 291 -21 223 324 129 14 chr3 202411870 202411971 -15625187 + L2 LINE L2 1702 1825 -1489 258 278 176 43 chr3 202411979 202412178 -15624980 + L2 LINE L2 2330 2501 -813 1535 162 20 146 chr3 202412178 202412526 -15624632 - MLT1B LTR MaLR 0 390 108 2182 108 0 3 chr3 202412526 202412831 -15624327 + AluSx SINE Alu 1 304 -8 1535 162 20 146 chr3 202412831 202412927 -15624231 - MLT1B LTR MaLR -282 108 2 258 278 176 43 chr3 202412927 202413051 -15624107 + L2 LINE L2 2501 2696 -618 245 316 0 26 chr3 202413442 202413518 -15623640 + L2 LINE L2 3240 3313 0 2034 112 4 0 chr3 202413561 202413838 -15623320 + AluSp SINE Alu 3 280 -33 279 0 0 0 chr3 202413841 202413872 -15623286 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 1999 117 0 66 chr3 202413883 202414217 -15622941 + AluSq SINE Alu 1 312 -1 265 284 54 14 chr3 202414873 202414947 -15622211 + L2 LINE L2 2643 2719 -595 757 271 81 35 chr3 202414949 202415259 -15621899 + L2 LINE L2 2653 2976 -338 2087 140 49 22 chr3 202415265 202415400 -15621758 + THE1C LTR MaLR 1 131 -244 4952 141 50 9 chr3 202415400 202416193 -15620965 - LTR1B LTR ERV1 0 826 1 2087 140 49 22 chr3 202416193 202416422 -15620736 + THE1C LTR MaLR 131 375 0 414 260 221 0 chr3 202416424 202416628 -15620530 + L2 LINE L2 2980 3228 -85 781 157 22 22 chr3 202416833 202416967 -15620191 - FAM SINE Alu -31 154 21 1576 244 69 20 chr3 202416983 202417430 -15619728 - L2 LINE L2 -562 2752 2284 2184 52 39 33 chr3 202417918 202418223 -15618935 + AluY SINE Alu 1 307 -4 1015 188 72 61 chr3 202418299 202418390 -15618768 + LTR37A LTR ERV1 78 166 -260 2260 103 0 0 chr3 202418390 202418692 -15618466 + AluSg SINE Alu 1 302 -8 1015 188 72 61 chr3 202418692 202418945 -15618213 + LTR37A LTR ERV1 166 426 0 2392 99 0 0 chr3 202519507 202519810 -15517348 + AluSg SINE Alu 1 303 -7 491 289 106 5 chr3 202519814 202520022 -15517136 - MIR SINE MIR -12 250 22 2283 109 3 6 chr3 202520022 202520333 -15516825 + AluSx SINE Alu 1 310 -2 297 65 0 0 chr3 202520585 202520631 -15516527 + Alu SINE Alu 254 299 -1 281 267 108 10 chr3 202520631 202520770 -15516388 + L1MC4 LINE L1 7808 8023 -19 2343 85 0 0 chr3 202521284 202521603 -15515555 - AluY SINE Alu 0 319 1 188 221 284 32 chr3 202522247 202522342 -15514816 + MIR SINE MIR 28 146 -116 204 365 0 0 chr3 202522979 202523042 -15514116 - L2 LINE L2 0 3272 3210 307 323 60 18 chr3 202526003 202526170 -15510988 - L3 LINE CR1 -141 1436 1263 1964 133 14 0 chr3 202526333 202526612 -15510546 + AluSq SINE Alu 1 283 -30 207 191 44 44 chr3 202526692 202526760 -15510398 + L3b LINE CR1 1266 1333 -250 306 320 20 0 chr3 202526966 202527066 -15510092 + L3b LINE CR1 1352 1453 -130 321 258 48 48 chr3 202527907 202528031 -15509127 + MIR SINE MIR 63 186 -76 235 290 0 0 chr3 202529249 202529311 -15507847 + MIR SINE MIR 89 150 -58 248 75 0 57 chr3 202529550 202529603 -15507555 + (TA)n Simple_repeat Simple_repeat 2 51 0 222 118 0 0 chr3 202529603 202529637 -15507521 + (CA)n Simple_repeat Simple_repeat 2 35 0 237 108 0 0 chr3 202530576 202530613 -15506545 + (TG)n Simple_repeat Simple_repeat 1 37 0 187 246 82 0 chr3 202531210 202531271 -15505887 + L2 LINE L2 3164 3229 -43 2294 96 0 3 chr3 202531401 202531694 -15505464 - AluSc SINE Alu -17 292 1 183 42 0 0 chr3 202531694 202531718 -15505440 + (T)n Simple_repeat Simple_repeat 1 24 0 1991 136 26 0 chr3 202532555 202532857 -15504301 + AluJb SINE Alu 1 310 -2 2378 102 0 6 chr3 202533093 202533407 -15503751 + AluSx SINE Alu 1 312 0 955 188 33 0 chr3 202533500 202533681 -15503477 + MER5A DNA MER1_type 1 187 -2 186 143 0 0 chr3 202533842 202533877 -15503281 + (TA)n Simple_repeat Simple_repeat 1 35 0 2265 109 0 10 chr3 202533912 202534224 -15502934 - AluSg SINE Alu -1 309 1 401 271 29 120 chr3 202534262 202534738 -15502420 - L1ME LINE L1 -376 5745 5313 240 300 12 0 chr3 202535177 202535257 -15501901 - L1ME LINE L1 -1333 4813 4733 764 286 136 74 chr3 202535362 202536393 -15500765 - L1ME LINE L1 -1618 4528 3434 2136 127 3 13 chr3 202536428 202536735 -15500423 - AluSx SINE Alu -8 304 1 30 27 0 0 chr3 202536768 202536805 -15500353 + AT_rich Low_complexity Low_complexity 1 37 0 631 313 62 44 chr3 202536885 202537336 -15499822 - L1ME LINE L1 -2981 3165 2707 2261 119 0 6 chr3 202537809 202538120 -15499038 + AluSx SINE Alu 1 309 -3 376 96 0 0 chr3 202538146 202538198 -15498960 + Charlie5 DNA MER1_type 2573 2624 0 275 296 72 46 chr3 202538687 202538839 -15498319 - MIR3 SINE MIR -23 185 30 2215 90 17 0 chr3 202539021 202539310 -15497848 + AluSc SINE Alu 2 295 -14 2039 112 14 3 chr3 202539438 202539724 -15497434 + AluSp SINE Alu 1 289 -24 1143 295 99 32 chr3 202539960 202540577 -15496581 + L3 LINE CR1 905 1562 -15 2255 112 0 0 chr3 202541873 202542169 -15494989 - AluSx SINE Alu -16 296 1 328 261 152 12 chr3 202542374 202542539 -15494619 - MER5A DNA MER1_type 0 189 2 216 247 41 27 chr3 202542584 202542657 -15494501 + MIR SINE MIR 69 142 -120 1794 81 4 0 chr3 202542727 202542961 -15494197 - L1PA8 LINE L1 -9 6163 5929 209 179 0 0 chr3 202543657 202543696 -15493462 + (TG)n Simple_repeat Simple_repeat 2 40 0 191 235 15 73 chr3 202544754 202544822 -15492336 + L3 LINE CR1 1512 1575 -2 2326 111 0 0 chr3 202545551 202545857 -15491301 - AluSx SINE Alu -6 306 1 2241 110 0 25 chr3 202545870 202546188 -15490970 - AluSx SINE Alu -2 310 1 210 300 138 0 chr3 202546247 202546327 -15490831 - MIR3 SINE MIR -45 163 73 507 114 13 0 chr3 202546926 202547005 -15490153 - MADE1 DNA Mariner 0 80 1 2067 114 7 13 chr3 202549088 202549395 -15487763 + AluSq SINE Alu 1 305 -8 450 0 0 0 chr3 202550358 202550408 -15486750 + (CA)n Simple_repeat Simple_repeat 2 51 0 2211 113 0 0 chr3 202551477 202551779 -15485379 - AluSx SINE Alu -10 302 1 28 0 0 0 chr3 202552965 202552993 -15484165 + AT_rich Low_complexity Low_complexity 1 28 0 323 342 34 8 chr3 202558151 202558268 -15478890 - L2 LINE L2 0 3272 3153 563 241 21 68 chr3 202558338 202558529 -15478629 - MIR SINE MIR -55 207 26 436 300 159 21 chr3 202558600 202558833 -15478325 + L3 LINE CR1 1310 1574 -3 2111 124 0 3 chr3 202559707 202560006 -15477152 + AluSx SINE Alu 1 298 -14 883 257 15 52 chr3 202560179 202560451 -15476707 - MIR SINE MIR 0 262 1 1030 222 43 8 chr3 202560491 202560725 -15476433 - MIR SINE MIR -20 242 1 434 302 36 42 chr3 202560928 202561120 -15476038 - MIR SINE MIR -11 251 61 2346 88 0 0 chr3 202561358 202561665 -15475493 + AluSx SINE Alu 1 307 -5 2146 198 13 57 chr3 202563185 202563710 -15473448 - L1ME3A LINE L1 0 6170 5669 25 0 0 0 chr3 202563951 202563976 -15473182 + AT_rich Low_complexity Low_complexity 1 25 0 2028 128 0 0 chr3 202564108 202564404 -15472754 - AluSx SINE Alu -16 296 1 285 317 62 37 chr3 202564662 202564823 -15472335 - L2 LINE L2 -210 3062 2898 1568 151 55 24 chr3 202565009 202565300 -15471858 + AluJb SINE Alu 1 300 -12 250 205 72 60 chr3 202565594 202565677 -15471481 + L2 LINE L2 3188 3271 -1 543 294 70 15 chr3 202566938 202567139 -15470019 + MIR SINE MIR 20 231 -31 416 312 47 6 chr3 202567164 202567334 -15469824 + MIR SINE MIR 73 249 -13 2323 54 0 32 chr3 202567827 202568140 -15469018 - AluY SINE Alu -8 303 1 224 293 12 0 chr3 202568577 202568659 -15468499 + (GGGTG)n Simple_repeat Simple_repeat 3 85 0 297 268 94 0 chr3 202569533 202569671 -15467487 - L1ME4a LINE L1 -5 6116 5966 443 296 58 18 chr3 202569683 202569909 -15467249 - L1ME4a LINE L1 -195 5926 5692 336 24 0 0 chr3 202569909 202569950 -15467208 + (TG)n Simple_repeat Simple_repeat 2 42 0 249 171 0 0 chr3 202570190 202570231 -15466927 - 5S rRNA rRNA -79 42 2 363 254 27 68 chr3 202570457 202570605 -15466553 + MIR SINE MIR 36 188 -62 198 0 0 0 chr3 202570860 202570882 -15466276 + (T)n Simple_repeat Simple_repeat 1 22 0 331 295 107 0 chr3 202571836 202571958 -15465200 - L2 LINE L2 0 3313 3179 194 151 55 0 chr3 202572123 202572196 -15464962 + (TG)n Simple_repeat Simple_repeat 2 78 0 347 243 105 33 chr3 202572328 202572509 -15464649 - HAL1b LINE L1 -619 729 536 1808 193 45 13 chr3 202572510 202572888 -15464270 + MLT1B LTR MaLR 1 390 0 350 241 103 9 chr3 202573722 202573838 -15463320 - L2 LINE L2 0 3313 3187 312 330 92 0 chr3 202573969 202574078 -15463080 + L3 LINE CR1 1351 1469 -108 320 261 76 34 chr3 202574114 202574233 -15462925 + L2 LINE L2 3149 3272 0 272 246 15 15 chr3 202574244 202574309 -15462849 + L3 LINE CR1 1512 1576 -1 449 266 27 71 chr3 202574542 202574651 -15462507 - MER5A DNA MER1_type -13 176 64 216 86 0 0 chr3 202574651 202574686 -15462472 + (TG)n Simple_repeat Simple_repeat 2 36 0 2229 84 0 3 chr3 202574686 202574973 -15462185 - AluSp SINE Alu -27 286 1 449 266 27 71 chr3 202574973 202575046 -15462112 - MER5A DNA MER1_type -123 66 1 2255 82 3 10 chr3 202575315 202575619 -15461539 - AluY SINE Alu -9 302 1 1689 150 4 7 chr3 202575801 202576081 -15461077 - AluJo SINE Alu -30 282 4 289 238 38 25 chr3 202576899 202576979 -15460179 - MER103 DNA DNA 0 166 86 225 0 0 0 chr3 202579405 202579430 -15457728 + (TG)n Simple_repeat Simple_repeat 2 26 0 192 179 0 0 chr3 202579444 202579483 -15457675 + GA-rich Low_complexity Low_complexity 2 40 0 402 21 0 0 chr3 202580538 202580585 -15456573 + (CTCA)n Simple_repeat Simple_repeat 1 47 0 230 344 151 61 chr3 202580585 202580896 -15456262 - L2 LINE L2 -17 3255 2917 2139 114 0 10 chr3 202581342 202581648 -15455510 + AluSx SINE Alu 1 303 -9 416 259 153 50 chr3 202581712 202582210 -15454948 + L1ME4a LINE L1 5567 6115 -6 736 224 11 17 chr3 202582885 202583064 -15454094 + MER5B DNA MER1_type 1 178 0 1174 148 6 0 chr3 202583097 202583280 -15453878 + MER5A DNA MER1_type 1 184 -5 233 297 108 0 chr3 202583384 202583495 -15453663 + MIR SINE MIR 134 256 -6 482 296 40 20 chr3 202583918 202584070 -15453088 + L2 LINE L2 3118 3272 0 185 0 0 39 chr3 202584127 202584153 -15453005 + (TAA)n Simple_repeat Simple_repeat 3 27 0 1723 189 36 9 chr3 202584157 202584491 -15452667 + MER2 DNA MER2_type 2 344 0 1789 138 31 7 chr3 202584633 202584922 -15452236 - AluSx SINE Alu -14 298 3 350 266 21 63 chr3 202585564 202585637 -15451521 + MIR SINE MIR 73 139 -123 1980 163 10 54 chr3 202585637 202586042 -15451116 - MLT1B LTR MaLR 0 390 4 350 266 21 63 chr3 202586042 202586111 -15451047 + MIR SINE MIR 139 209 -53 216 339 0 24 chr3 202587166 202587293 -15449865 + GA-rich Low_complexity Low_complexity 2 125 0 423 0 0 0 chr3 202587430 202587477 -15449681 + (TG)n Simple_repeat Simple_repeat 2 48 0 320 313 76 8 chr3 202587830 202587961 -15449197 + MIR3 SINE MIR 46 185 -23 698 218 35 6 chr3 202588461 202588631 -15448527 + L1P LINE L1 5078 5252 -894 301 305 64 28 chr3 202588635 202588776 -15448382 - MIR SINE MIR -71 191 46 399 289 137 37 chr3 202589386 202589576 -15447582 + MIR SINE MIR 49 257 -5 286 257 59 20 chr3 202590180 202590281 -15446877 - L2 LINE L2 0 3272 3168 360 299 61 54 chr3 202590465 202590612 -15446546 + MIR SINE MIR 51 198 -64 1570 201 59 20 chr3 202590649 202591007 -15446151 + MLT1A2 LTR MaLR 1 372 -2 325 275 75 25 chr3 202591608 202591728 -15445430 + MIR SINE MIR 17 142 -66 495 261 157 13 chr3 202591771 202591924 -15445234 - MER5A DNA MER1_type 0 189 15 1030 235 4 35 chr3 202591936 202592166 -15444992 + MER58A DNA MER1_type 1 223 -1 236 230 151 25 chr3 202592206 202592310 -15444848 + MIR SINE MIR 66 181 -27 310 345 69 14 chr3 202592746 202592891 -15444267 - L2 LINE L2 -3 3269 3117 253 288 197 23 chr3 202593938 202594070 -15443088 + L2 LINE L2 3113 3267 -5 2049 130 0 0 chr3 202594228 202594528 -15442630 + AluSq SINE Alu 1 300 -13 401 309 27 13 chr3 202595120 202595269 -15441889 - MIR SINE MIR -21 241 91 350 245 38 94 chr3 202595972 202596159 -15440999 + MIR SINE MIR 30 206 -54 200 295 64 13 chr3 202596308 202596386 -15440772 - L2 LINE L2 -53 3219 3138 2345 90 3 0 chr3 202596469 202596781 -15440377 - AluSp SINE Alu 0 313 1 469 254 186 11 chr3 202596913 202597090 -15440068 - MIR SINE MIR -18 244 37 1932 95 0 0 chr3 202597224 202597477 -15439681 - AluSx SINE Alu -59 253 1 664 284 22 16 chr3 202597771 202597954 -15439204 - MIR3 SINE MIR -22 186 3 2140 102 3 3 chr3 202598592 202598895 -15438263 + AluSx SINE Alu 1 303 -9 483 277 97 19 chr3 202599175 202599330 -15437828 - MER5A DNA MER1_type 0 189 12 190 254 63 0 chr3 202599416 202599479 -15437679 - MIR3 SINE MIR -130 78 12 3446 254 93 7 chr3 202599730 202600732 -15436426 - L2 LINE L2 -348 2966 1879 219 69 0 0 chr3 202601220 202601249 -15435909 + (TG)n Simple_repeat Simple_repeat 2 30 0 2179 87 0 0 chr3 202601603 202601890 -15435268 - AluSg SINE Alu -23 287 1 410 279 59 7 chr3 202602195 202602331 -15434827 - MIR SINE MIR -100 162 20 451 319 18 0 chr3 202602560 202602726 -15434432 - L3 LINE CR1 -160 1417 1249 755 250 94 13 chr3 202602750 202602989 -15434169 - MIR SINE MIR -11 251 2 286 340 59 46 chr3 202603014 202603167 -15433991 - L3 LINE CR1 -378 1199 1045 542 329 162 36 chr3 202603308 202603752 -15433406 - L3 LINE CR1 -592 985 486 364 263 86 63 chr3 202603759 202603934 -15433224 - MIR3 SINE MIR -10 198 20 443 330 84 25 chr3 202604066 202604269 -15432889 - L3 LINE CR1 -1303 274 60 1897 131 10 13 chr3 202604773 202605086 -15432072 - AluSq SINE Alu -1 312 1 434 300 88 40 chr3 202605227 202605454 -15431704 - MIR SINE MIR -2 260 23 195 209 0 70 chr3 202605550 202605562 -15431596 + L2 LINE L2 3237 3276 -37 215 161 0 0 chr3 202605562 202605593 -15431565 + MIR SINE MIR 201 231 -31 459 280 20 27 chr3 202606001 202606151 -15431007 + MIR SINE MIR 24 172 -90 23 33 0 0 chr3 202606484 202606514 -15430644 + GC_rich Low_complexity Low_complexity 1 30 0 400 273 99 8 chr3 202607243 202607364 -15429794 - L3b LINE CR1 -114 1469 1338 310 231 30 166 chr3 202607568 202607599 -15429559 - L1MC5 LINE L1 -26 7935 7901 2188 79 0 3 chr3 202607599 202607891 -15429267 + AluSx SINE Alu 1 291 -21 310 231 30 166 chr3 202607891 202608058 -15429100 - L1MC5 LINE L1 -60 7901 7764 400 193 180 47 chr3 202608091 202608324 -15428834 - L1MC5 LINE L1 -268 7693 7430 686 159 148 6 chr3 202608324 202608484 -15428674 - MER5A DNA MER1_type 0 189 4 633 239 44 12 chr3 202608487 202608745 -15428413 - L1MC5 LINE L1 -393 7415 7260 2260 100 0 3 chr3 202608905 202609216 -15427942 - AluSx SINE Alu -2 310 1 439 259 28 28 chr3 202609242 202609385 -15427773 - MIR3 SINE MIR -11 197 55 339 307 85 7 chr3 202609463 202609616 -15427542 - MIR3 SINE MIR 0 208 44 332 321 80 73 chr3 202610570 202610897 -15426261 + L2 LINE L2 2943 3271 -1 254 194 149 0 chr3 202611234 202611301 -15425857 - L2 LINE L2 -49 3264 3188 596 224 153 6 chr3 202611315 202611498 -15425660 + MER63A DNA MER1_type 1 210 0 2106 92 0 17 chr3 202611731 202612026 -15425132 - AluSc SINE Alu -19 290 1 262 233 147 78 chr3 202612199 202612297 -15424861 - MIR SINE MIR -2 260 149 2052 112 0 3 chr3 202612297 202612591 -15424567 - AluSx SINE Alu -19 293 1 262 233 147 78 chr3 202612591 202612621 -15424537 - MIR SINE MIR -113 149 123 840 240 62 172 chr3 202612778 202613370 -15423788 + L3 LINE CR1 1039 1565 -12 195 129 0 0 chr3 202613917 202613948 -15423210 + (T)n Simple_repeat Simple_repeat 1 31 0 301 309 57 32 chr3 202614544 202614667 -15422491 - L2 LINE L2 -1 3312 3187 259 243 243 47 chr3 202614826 202614974 -15422184 + MIR SINE MIR 86 262 0 361 212 102 17 chr3 202616130 202616248 -15420910 + L1ME4a LINE L1 5993 6120 -1 187 323 81 24 chr3 202616769 202616893 -15420265 + MIR3 SINE MIR 11 141 -67 1901 138 11 0 chr3 202616904 202617187 -15419971 + AluSx SINE Alu 1 286 -26 21 0 0 0 chr3 202617377 202617398 -15419760 + AT_rich Low_complexity Low_complexity 1 21 0 246 22 239 22 chr3 202617398 202617444 -15419714 - L1MB5 LINE L1 -31 6143 6088 440 265 126 26 chr3 202617466 202617696 -15419462 - L1M4 LINE L1 -432 5752 5500 2274 108 0 0 chr3 202617752 202618059 -15419099 + AluSq SINE Alu 1 307 -6 226 192 0 39 chr3 202618071 202618123 -15419035 + L1MC/D LINE L1 5831 5880 -1928 1911 139 7 3 chr3 202618206 202618507 -15418651 + AluSx SINE Alu 2 303 -9 23 33 0 0 chr3 202618658 202618688 -15418470 + AT_rich Low_complexity Low_complexity 1 30 0 1977 119 0 0 chr3 202618881 202619158 -15418000 + AluSc SINE Alu 1 277 -32 216 0 0 0 chr3 202619161 202619185 -15417973 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1954 141 10 0 chr3 202619520 202619826 -15417332 - AluSq SINE Alu -4 309 1 313 316 123 18 chr3 202620142 202620313 -15416845 + MIR SINE MIR 48 236 -26 352 266 108 44 chr3 202620338 202620496 -15416662 - MIR SINE MIR -74 188 21 2179 115 0 0 chr3 202620807 202621119 -15416039 - AluSx SINE Alu 0 312 1 192 77 0 0 chr3 202621204 202621230 -15415928 + (A)n Simple_repeat Simple_repeat 1 26 0 235 247 56 22 chr3 202621268 202621357 -15415801 + MIR SINE MIR 73 164 -98 2126 106 0 10 chr3 202621868 202622179 -15414979 - AluSx SINE Alu -4 308 1 369 165 0 99 chr3 202622196 202622287 -15414871 + MIR SINE MIR 110 191 -71 901 213 29 6 chr3 202623908 202624082 -15413076 - MER45A DNA AcHobo 0 178 1 214 187 320 13 chr3 202626302 202626377 -15410781 - MER5A DNA MER1_type -83 106 9 417 327 12 12 chr3 202626402 202626570 -15410588 - MER5A DNA MER1_type -2 187 20 640 287 33 6 chr3 202627004 202627185 -15409973 + MIR SINE MIR 74 259 -3 21 0 0 0 chr3 202627278 202627299 -15409859 + AT_rich Low_complexity Low_complexity 1 21 0 194 213 213 40 chr3 202627513 202627588 -15409570 - L2 LINE L2 0 3313 3226 334 320 89 55 chr3 202627719 202627910 -15409248 - L2 LINE L2 -337 2977 2794 2001 120 0 3 chr3 202627910 202628211 -15408947 + AluSx SINE Alu 5 304 -8 334 320 89 55 chr3 202628211 202628579 -15408579 - L2 LINE L2 -520 2794 2399 186 43 0 0 chr3 202628655 202628678 -15408480 + (TCCA)n Simple_repeat Simple_repeat 4 26 0 392 224 35 0 chr3 202628679 202628764 -15408394 - L2 LINE L2 -15 3257 3170 1837 126 22 4 chr3 202628793 202629071 -15408087 - AluSx SINE Alu -29 283 1 293 261 50 50 chr3 202629243 202629362 -15407796 - MIR SINE MIR -40 222 104 497 271 145 19 chr3 202629644 202629851 -15407307 + MIR SINE MIR 20 252 -10 304 318 26 78 chr3 202630852 202631000 -15406158 + MIR3 SINE MIR 3 140 -68 2369 72 0 3 chr3 202631000 202631304 -15405854 + AluSc SINE Alu 1 303 -6 304 318 26 78 chr3 202631304 202631347 -15405811 + MIR3 SINE MIR 140 184 -24 563 210 70 19 chr3 202631404 202631561 -15405597 - Charlie8 DNA MER1_type -2221 196 32 204 40 0 0 chr3 202631929 202631954 -15405204 + (A)n Simple_repeat Simple_repeat 1 25 0 184 195 0 0 chr3 202634779 202634820 -15402338 - MIR SINE MIR -70 192 152 502 284 62 7 chr3 202635152 202635331 -15401827 + MIR SINE MIR 15 200 -62 1139 59 0 0 chr3 202635338 202635474 -15401684 + AluSq/x SINE Alu 1 136 -177 1710 106 68 4 chr3 202635474 202635738 -15401420 + AluSg SINE Alu 1 281 -29 207 0 0 0 chr3 202635741 202635764 -15401394 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 218 31 0 31 chr3 202635780 202635812 -15401346 + (TA)n Simple_repeat Simple_repeat 1 31 0 754 231 0 40 chr3 202637870 202638043 -15399115 - FRAM SINE Alu 0 166 1 654 273 29 34 chr3 202638308 202638546 -15398612 + MER102b DNA MER1_type 104 340 -1 283 310 80 26 chr3 202639814 202639927 -15397231 + L3 LINE CR1 1452 1570 -7 479 291 44 32 chr3 202640063 202640221 -15396937 - MIR SINE MIR -55 207 48 2013 185 23 42 chr3 202641645 202642023 -15395135 + MLT1C LTR MaLR 1 370 -97 2242 77 0 13 chr3 202642023 202642322 -15394836 - AluSx SINE Alu -17 295 1 2013 185 23 42 chr3 202642322 202642419 -15394739 + MLT1C LTR MaLR 370 467 0 253 360 96 15 chr3 202642432 202642568 -15394590 + L2 LINE L2 3125 3271 -1 2267 73 0 3 chr3 202642755 202643082 -15394076 + AluSc SINE Alu 1 309 0 532 331 96 45 chr3 202643684 202644037 -15393121 - L3b LINE CR1 -90 1493 1123 409 215 201 23 chr3 202644093 202644312 -15392846 + MIR SINE MIR 5 262 0 1989 110 3 13 chr3 202644414 202644724 -15392434 + AluSx SINE Alu 1 307 -5 333 224 28 19 chr3 202645326 202645433 -15391725 + L1ME4a LINE L1 5983 6090 -31 234 304 10 20 chr3 202645701 202645803 -15391355 - MIR SINE MIR 0 262 162 1905 182 59 74 chr3 202645804 202646248 -15390910 + MLT1D LTR MaLR 3 439 -66 2407 55 0 13 chr3 202646248 202646560 -15390598 - AluY SINE Alu -3 308 1 1905 182 59 74 chr3 202646560 202646626 -15390532 + MLT1D LTR MaLR 439 505 0 411 234 36 27 chr3 202646627 202646738 -15390420 - MIR SINE MIR -111 151 40 521 300 112 41 chr3 202646776 202647116 -15390042 - L3 LINE CR1 -103 1474 1111 354 291 249 0 chr3 202649156 202649321 -15387837 - MIR SINE MIR -3 259 54 671 195 162 7 chr3 202650028 202650182 -15386976 + MER45A DNA AcHobo 1 178 0 421 272 70 21 chr3 202650327 202650469 -15386689 + MIR SINE MIR 104 250 -12 465 326 44 57 chr3 202650484 202650728 -15386430 + MIR SINE MIR 8 250 -12 1921 153 10 19 chr3 202650788 202651102 -15386056 + AluSx SINE Alu 1 311 -1 213 39 0 0 chr3 202651979 202652005 -15385153 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 195 42 0 0 chr3 202653214 202653238 -15383920 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 2247 108 14 0 chr3 202653305 202653601 -15383557 + AluSq SINE Alu 1 300 -13 2073 110 0 0 chr3 202654068 202654359 -15382799 + AluSx SINE Alu 21 311 0 624 207 43 0 chr3 202655753 202655917 -15381241 - L1MD3 LINE L1 0 7995 7825 2180 123 23 0 chr3 202656665 202656967 -15380191 - AluSq SINE Alu -4 309 1 2144 127 0 7 chr3 202657185 202657484 -15379674 - AluSx SINE Alu -15 297 1 182 289 58 39 chr3 202657693 202657797 -15379361 - L3 LINE CR1 -1102 475 370 694 162 56 194 chr3 202658592 202658744 -15378414 - MER33 DNA MER1_type -2261 324 253 2286 108 0 10 chr3 202658744 202659049 -15378109 - AluSx SINE Alu -10 302 1 694 162 56 194 chr3 202659049 202659272 -15377886 - MER33 DNA MER1_type -2332 253 1 540 81 0 0 chr3 202660738 202660812 -15376346 + (TTCC)n Simple_repeat Simple_repeat 4 77 0 358 247 12 12 chr3 202661290 202661371 -15375787 + MER5A DNA MER1_type 26 106 -83 308 242 68 83 chr3 202661298 202661430 -15375728 - MER5A DNA MER1_type -22 167 38 * 225 333 98 18 chr3 202661519 202661714 -15375444 + MIR SINE MIR 8 254 -8 243 232 71 0 chr3 202662152 202662208 -15374950 + MIR SINE MIR 94 153 -109 1919 139 37 0 chr3 202662337 202662637 -15374521 + AluSx SINE Alu 1 310 0 268 270 165 43 chr3 202662908 202663023 -15374135 + MIR SINE MIR 127 255 -7 1696 106 35 12 chr3 202663026 202663281 -15373877 + L1PA11 LINE L1 5912 6172 -2 2402 95 0 0 chr3 202663332 202663627 -15373531 - AluSx SINE Alu -17 295 1 354 249 11 143 chr3 202666060 202666249 -15370909 - L3 LINE CR1 -108 1469 1306 205 276 138 35 chr3 202666310 202666397 -15370761 - MIR SINE MIR -66 196 101 373 210 123 0 chr3 202666397 202666478 -15370680 + 5S rRNA rRNA 1 91 -30 211 213 29 22 chr3 202666484 202666553 -15370605 - MIR3 SINE MIR -138 70 13 240 176 66 66 chr3 202667172 202667263 -15369895 + L2 LINE L2 2882 2972 -342 291 385 67 3 chr3 202667274 202667557 -15369601 + L2 LINE L2 2380 2680 -634 440 345 52 57 chr3 202667978 202668595 -15368563 - L2 LINE L2 -13 3259 2647 1268 268 154 10 chr3 202669127 202669870 -15367288 + L2 LINE L2 2458 3313 0 203 337 71 20 chr3 202670056 202670154 -15367004 - MIR3 SINE MIR -105 103 1 1885 214 42 8 chr3 202671235 202671707 -15365451 + Charlie4a DNA MER1_type 21 508 0 21 0 0 0 chr3 202672463 202672484 -15364674 + GC_rich Low_complexity Low_complexity 1 21 0 207 262 0 0 chr3 202673296 202673338 -15363820 + polypurine Low_complexity Low_complexity 1 42 0 518 259 43 7 chr3 202674259 202674398 -15362760 - MIR SINE MIR -92 170 27 227 338 53 43 chr3 202674959 202675166 -15361992 + L2 LINE L2 2224 2432 -882 2279 97 0 0 chr3 202675624 202675945 -15361213 + AluSg SINE Alu 1 321 0 2395 84 0 0 chr3 202676062 202676348 -15360810 + AluSq SINE Alu 1 286 -27 300 53 0 0 chr3 202676348 202676386 -15360772 + (CAAG)n Simple_repeat Simple_repeat 2 39 0 2369 98 0 0 chr3 202677035 202677341 -15359817 - AluSx SINE Alu -6 306 1 223 237 43 75 chr3 202677368 202677461 -15359697 - MIR SINE MIR -62 200 111 2436 79 0 29 chr3 202678431 202678747 -15358411 - AluSc SINE Alu -2 307 1 1406 243 22 26 chr3 202678827 202679365 -15357793 - L1ME3 LINE L1 0 6162 5558 2387 94 3 0 chr3 202679375 202679674 -15357484 - AluSx SINE Alu -12 300 1 791 174 0 7 chr3 202680184 202680333 -15356825 + L1PA14 LINE L1 6014 6161 0 216 97 0 0 chr3 202680695 202680726 -15356432 + (TG)n Simple_repeat Simple_repeat 1 31 0 344 263 38 44 chr3 202682122 202682282 -15354876 + MIR SINE MIR 85 243 -19 843 240 6 6 chr3 202682305 202682476 -15354682 + MER5B DNA MER1_type 7 177 -1 1855 161 7 14 chr3 202682915 202683207 -15353951 - AluJb SINE Alu -22 290 1 507 267 7 15 chr3 202683411 202683546 -15353612 - MIR SINE MIR -109 153 20 215 329 49 0 chr3 202684015 202684097 -15353061 + L2 LINE L2 2430 2515 -799 512 345 106 34 chr3 202684300 202684883 -15352275 + L2 LINE L2 2653 3272 0 2194 74 30 34 chr3 202685500 202685797 -15351361 - AluSq SINE Alu -17 296 1 270 253 66 93 chr3 202685844 202686026 -15351132 + MIR SINE MIR 86 262 0 2350 109 3 0 chr3 202686145 202686449 -15350709 - AluSc SINE Alu -4 305 1 240 241 0 69 chr3 202686731 202686847 -15350311 + CT-rich Low_complexity Low_complexity 3 110 0 1765 158 3 94 chr3 202686955 202687166 -15349992 - AluSp SINE Alu -2 311 141 5606 45 0 0 chr3 202687166 202687826 -15349332 - L1PA5 LINE L1 -1 6153 5494 1765 158 3 94 chr3 202687826 202687956 -15349202 - AluSp SINE Alu -172 141 1 21 0 0 0 chr3 202687964 202687985 -15349173 + AT_rich Low_complexity Low_complexity 1 21 0 586 0 27 0 chr3 202688723 202688797 -15348361 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 697 288 34 25 chr3 202688802 202689128 -15348030 + L1ME4a LINE L1 5603 5931 -190 304 285 28 21 chr3 202689141 202689285 -15347873 + L1ME4a LINE L1 5976 6120 -1 311 289 0 0 chr3 202689944 202690027 -15347131 + MIR SINE MIR 154 236 -26 437 307 67 13 chr3 202690110 202690260 -15346898 - MIR SINE MIR -97 165 8 506 252 79 0 chr3 202691235 202691362 -15345796 + MIR3 SINE MIR 66 202 -6 280 173 53 13 chr3 202692115 202692190 -15344968 + MIR SINE MIR 118 195 -67 212 250 0 0 chr3 202692225 202692269 -15344889 + CT-rich Low_complexity Low_complexity 1 44 0 465 307 115 5 chr3 202692885 202693103 -15344055 + MIR SINE MIR 21 262 0 808 273 86 103 chr3 202694291 202694942 -15342216 + L3 LINE CR1 712 1351 -226 218 270 108 27 chr3 202695061 202695172 -15341986 + L3 LINE CR1 1370 1489 -88 1424 239 98 66 chr3 202695192 202695319 -15341839 + L2 LINE L2 2523 2644 -669 1994 114 0 11 chr3 202695319 202695591 -15341567 - AluSx SINE Alu -41 271 3 1424 239 98 66 chr3 202695591 202695685 -15341473 + L2 LINE L2 2644 2734 -579 2232 89 27 0 chr3 202695685 202695977 -15341181 - AluSg SINE Alu -10 300 1 1424 239 98 66 chr3 202695977 202696513 -15340645 + L2 LINE L2 2734 3310 -3 296 290 32 32 chr3 202697124 202697217 -15339941 + L3 LINE CR1 1483 1575 -2 213 316 63 21 chr3 202697739 202697834 -15339324 + MER5B DNA MER1_type 31 129 -49 632 259 78 39 chr3 202697842 202698074 -15339084 + MIR SINE MIR 22 262 0 238 273 81 30 chr3 202698087 202698186 -15338972 - MIR SINE MIR -6 256 153 2458 76 3 10 chr3 202698445 202698759 -15338399 - AluSp SINE Alu -1 312 1 292 248 150 35 chr3 202699165 202699278 -15337880 + MIR SINE MIR 24 149 -113 1493 211 97 23 chr3 202699475 202699529 -15337629 + L1MC5 LINE L1 7407 7456 -505 2257 96 0 10 chr3 202699529 202699848 -15337310 + AluSq SINE Alu 1 313 0 1493 211 97 23 chr3 202699848 202700276 -15336882 + L1MC5 LINE L1 7456 7925 -36 2189 250 79 48 chr3 202703214 202703935 -15333223 + L1MEc LINE L1 36 778 -5618 730 276 22 4 chr3 202703926 202704154 -15333004 + L1M4 LINE L1 3550 3781 -2365 * 230 114 0 0 chr3 202704174 202704209 -15332949 + L1ME1 LINE L1 5369 5403 -763 1384 230 42 30 chr3 202704211 202704684 -15332474 + L1ME1 LINE L1 5684 6299 -13 265 247 0 75 chr3 202705124 202705217 -15331941 + MIR3 SINE MIR 83 168 -40 2359 76 0 45 chr3 202705289 202705603 -15331555 + AluSx SINE Alu 1 300 -12 1931 163 48 5 chr3 202705735 202706109 -15331049 - L1MC1 LINE L1 0 6333 5944 1480 101 5 5 chr3 202707135 202707334 -15329824 + AluSp SINE Alu 105 303 -10 2146 103 0 3 chr3 202707998 202708326 -15328832 + AluSc SINE Alu 1 327 0 198 0 0 0 chr3 202708416 202708438 -15328720 + (A)n Simple_repeat Simple_repeat 1 22 0 1859 156 40 7 chr3 202708615 202708916 -15328242 + AluSx SINE Alu 2 312 0 703 180 136 29 chr3 202708939 202709145 -15328013 - MIR SINE MIR 0 262 35 333 0 0 0 chr3 202709846 202709883 -15327275 + (CA)n Simple_repeat Simple_repeat 1 37 0 266 334 9 26 chr3 202711009 202711221 -15325937 + GA-rich Low_complexity Low_complexity 1 208 0 2157 131 3 10 chr3 202712506 202712914 -15324244 - AluSx SINE Alu 0 406 1 2465 59 0 0 chr3 202714126 202714415 -15322743 + AluY SINE Alu 4 292 -19 252 288 0 14 chr3 202714525 202714598 -15322560 - Charlie7 DNA MER1_type -2507 105 34 217 329 36 84 chr3 202714797 202715046 -15322112 + L2 LINE L2 2987 3223 -49 1047 134 0 0 chr3 202715238 202715417 -15321741 + (TA)n Simple_repeat Simple_repeat 1 179 0 296 242 111 10 chr3 202715745 202715844 -15321314 - MIR SINE MIR -84 124 16 277 282 113 14 chr3 202716293 202716435 -15320723 - MIR SINE MIR -74 188 33 329 324 60 22 chr3 202717474 202717659 -15319499 - MIR SINE MIR -53 209 18 223 288 135 18 chr3 202717656 202717767 -15319391 + L2 LINE L2 3133 3256 -16 * 2533 250 222 36 chr3 202717807 202719552 -15317606 - L2 LINE L2 0 3313 1236 279 352 55 40 chr3 202719940 202720139 -15317019 + L2 LINE L2 2682 2883 -431 294 336 35 9 chr3 202720194 202720310 -15316848 + L2 LINE L2 2976 3094 -178 300 250 205 27 chr3 202721692 202721804 -15315354 - MIR SINE MIR -111 151 20 2613 53 3 0 chr3 202722764 202723067 -15314091 + AluSg SINE Alu 1 304 -6 503 259 96 6 chr3 202723581 202723747 -15313411 - MIR SINE MIR -14 248 68 615 241 41 12 chr3 202723842 202724012 -15313146 + MER5B DNA MER1_type 2 176 -2 3027 3 0 0 chr3 202724612 202724930 -15312228 + AluYb8 SINE Alu 1 318 0 206 250 22 87 chr3 202725089 202725181 -15311977 - MER5A DNA MER1_type -6 183 98 311 250 43 22 chr3 202725706 202725798 -15311360 + L2 LINE L2 3219 3312 -1 730 243 11 11 chr3 202725877 202726054 -15311104 - MER5B DNA MER1_type -1 177 1 703 173 160 0 chr3 202726335 202726491 -15310667 + MER5A DNA MER1_type 9 189 0 468 0 0 0 chr3 202726951 202727003 -15310155 + (CA)n Simple_repeat Simple_repeat 1 52 0 256 368 11 35 chr3 202727076 202727250 -15309908 + MIR3 SINE MIR 24 193 -15 2415 86 3 0 chr3 202727250 202727552 -15309606 + AluSx SINE Alu 1 303 -9 831 323 87 31 chr3 202727841 202728414 -15308744 - L3 LINE CR1 -9 1568 964 330 216 54 102 chr3 202728458 202728531 -15308627 + L1ME4a LINE L1 5805 5880 -241 839 251 139 62 chr3 202728531 202729077 -15308081 + MLT1G LTR MaLR 3 590 0 330 216 54 102 chr3 202729077 202729170 -15307988 + L1ME4a LINE L1 5880 5963 -158 208 216 0 0 chr3 202729368 202729405 -15307753 + (TG)n Simple_repeat Simple_repeat 2 38 0 226 281 49 12 chr3 202730563 202730645 -15306513 + L2 LINE L2 3179 3263 -50 1241 216 149 20 chr3 202731231 202731587 -15305571 + MLT1C LTR MaLR 1 402 -65 440 254 46 29 chr3 202732026 202732199 -15304959 - MIR3 SINE MIR -8 200 25 385 228 53 18 chr3 202732747 202732861 -15304297 + L1ME4a LINE L1 5804 5921 -200 575 284 13 58 chr3 202734084 202734309 -15302849 - MER112 DNA MER1_type -43 217 3 185 307 59 0 chr3 202734509 202734610 -15302548 + L3 LINE CR1 1288 1394 -183 3065 124 0 0 chr3 202734929 202735373 -15301785 + L1PA15 LINE L1 5719 6162 -3 240 283 65 22 chr3 202736121 202736213 -15300945 - MIR SINE MIR -43 219 124 2206 102 6 42 chr3 202736290 202736432 -15300726 + AluSc SINE Alu 2 147 -162 2467 79 0 3 chr3 202736432 202736736 -15300422 + AluY SINE Alu 1 303 -8 2206 102 6 42 chr3 202736736 202736906 -15300252 + AluSc SINE Alu 147 303 -6 542 272 27 76 chr3 202736972 202737244 -15299914 + MIR SINE MIR 3 261 -1 4807 105 53 81 chr3 202737278 202738190 -15298968 + L1PA16 LINE L1 5278 6163 -3 3283 189 121 121 chr3 202738284 202738888 -15298270 - L1MC4a LINE L1 -633 7175 6572 2070 128 0 24 chr3 202738888 202739186 -15297972 + AluSx SINE Alu 2 292 -20 3283 189 121 121 chr3 202739186 202739225 -15297933 - L1MC4a LINE L1 -1236 6572 6534 243 0 0 0 chr3 202739225 202739252 -15297906 + (TC)n Simple_repeat Simple_repeat 2 28 0 3283 189 121 121 chr3 202739252 202739653 -15297505 - L1MC4a LINE L1 -1274 6534 6134 1783 174 3 23 chr3 202739653 202739963 -15297195 + AluJo SINE Alu 1 304 -8 3283 189 121 121 chr3 202739963 202740153 -15297005 - L1MC4a LINE L1 -1674 6134 5936 1632 152 9 81 chr3 202740153 202740488 -15296670 - AluJo SINE Alu -1 311 1 3283 189 121 121 chr3 202740488 202740607 -15296551 - L1MC4a LINE L1 -1871 5937 5819 183 262 0 0 chr3 202741188 202741230 -15295928 - L2 LINE L2 -217 3055 3014 2353 95 0 10 chr3 202741350 202741656 -15295502 - AluSx SINE Alu -9 303 1 455 248 18 0 chr3 202741997 202742110 -15295048 + MIR3 SINE MIR 81 195 -13 557 238 122 107 chr3 202743154 202743716 -15293442 + MLT1G LTR MaLR 20 590 0 250 244 143 36 chr3 202744636 202744804 -15292354 - MIR SINE MIR -52 210 25 265 270 190 36 chr3 202745347 202745484 -15291674 + MIR SINE MIR 29 186 -76 2820 126 39 0 chr3 202745500 202745906 -15291252 + MSTC LTR MaLR 4 425 -3 466 201 75 37 chr3 202745940 202746074 -15291084 + MER5A DNA MER1_type 1 139 -50 699 279 25 0 chr3 202747383 202747587 -15289571 - MIR SINE MIR -7 255 47 203 355 89 0 chr3 202747846 202747886 -15289272 + MIR3 SINE MIR 43 78 -130 1552 126 9 22 chr3 202747886 202748109 -15289049 - AluSq SINE Alu -50 263 44 203 355 89 0 chr3 202748109 202748192 -15288966 + MIR3 SINE MIR 78 177 -31 381 258 103 105 chr3 202748331 202748711 -15288447 + L1ME LINE L1 5426 5804 -317 937 216 6 55 chr3 202748754 202749099 -15288059 + LTR16A LTR ERVL 57 436 -14 967 304 64 53 chr3 202749217 202750179 -15286979 + L1M4 LINE L1 2980 3963 -2183 183 100 0 0 chr3 202750179 202750209 -15286949 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 967 304 64 53 chr3 202750209 202750614 -15286544 + L1M4 LINE L1 3963 4362 -1784 1878 169 3 3 chr3 202750665 202750973 -15286185 + AluJb SINE Alu 1 308 -4 231 261 112 67 chr3 202751129 202751263 -15285895 + MIR SINE MIR 64 203 -59 232 352 50 50 chr3 202751945 202752124 -15285034 - L2 LINE L2 -18 3254 3076 436 268 101 40 chr3 202752616 202752814 -15284344 + MIR SINE MIR 47 256 -6 675 214 0 8 chr3 202754143 202754274 -15282884 + FLAM_A SINE Alu 1 130 -3 572 0 0 0 chr3 202754402 202754475 -15282683 - L1P LINE L1 -804 5351 5279 4052 31 0 0 chr3 202754475 202754953 -15282205 + L1PA2 LINE L1 5671 6151 -4 231 237 7 15 chr3 202755310 202755390 -15281768 + T-rich Low_complexity Low_complexity 1 134 0 1821 167 27 7 chr3 202756060 202756360 -15280798 - AluSx SINE Alu -4 308 3 328 245 101 61 chr3 202756476 202756754 -15280404 - L1ME4a LINE L1 -76 6045 5757 4938 83 12 25 chr3 202756785 202757534 -15279624 + L1PA14 LINE L1 5420 6158 -3 2186 77 4 0 chr3 202758544 202758838 -15278320 - AluSg1 SINE Alu 0 300 6 276 30 0 0 chr3 202759427 202759460 -15277698 + (CTATA)n Simple_repeat Simple_repeat 5 37 0 423 279 131 47 chr3 202759694 202759944 -15277214 - L1MEc LINE L1 -3720 2495 2268 2330 87 0 3 chr3 202759944 202760253 -15276905 + AluY SINE Alu 1 308 -3 423 279 131 47 chr3 202760253 202760357 -15276801 - L1MEc LINE L1 -3947 2268 2159 2118 129 7 3 chr3 202760357 202760660 -15276498 - AluSq SINE Alu -9 304 1 475 286 72 81 chr3 202760989 202761229 -15275929 - HAL1b LINE L1 -621 727 491 1840 160 10 0 chr3 202761229 202761523 -15275635 - AluJb SINE Alu -10 302 6 475 286 72 81 chr3 202761523 202761712 -15275446 - HAL1b LINE L1 -857 491 302 462 111 0 56 chr3 202761754 202761844 -15275314 - L1PA8 LINE L1 0 6172 6088 24 0 0 0 chr3 202761844 202761868 -15275290 + AT_rich Low_complexity Low_complexity 1 24 0 671 139 10 0 chr3 202761868 202761969 -15275189 - AluJb SINE Alu -30 282 181 4507 169 21 23 chr3 202762540 202762667 -15274491 - L1MB3 LINE L1 0 6183 6057 1968 140 3 20 chr3 202762667 202762967 -15274191 - AluSx SINE Alu -17 295 1 4507 169 21 23 chr3 202762967 202763818 -15273340 - L1MB3 LINE L1 -126 6057 5208 227 331 14 58 chr3 202764158 202764297 -15272861 - MER5A DNA MER1_type -22 167 35 220 331 22 59 chr3 202764184 202764320 -15272838 + MER5B DNA MER1_type 48 178 0 * 372 362 86 9 chr3 202764328 202764549 -15272609 + L3 LINE CR1 278 515 -1062 206 352 152 19 chr3 202764558 202764712 -15272446 + L3 LINE CR1 1048 1239 -338 421 204 31 128 chr3 202764712 202764908 -15272250 + MER5B DNA MER1_type 1 177 -1 206 352 152 19 chr3 202764908 202764963 -15272195 + L3 LINE CR1 1239 1285 -292 612 307 151 33 chr3 202765264 202765962 -15271196 + L2 LINE L2 2278 3068 -204 2037 139 14 0 chr3 202766018 202766306 -15270852 + AluSx SINE Alu 1 292 -20 225 73 0 0 chr3 202766335 202766376 -15270782 - LTR66 LTR ERVL -176 434 394 239 173 27 40 chr3 202766378 202766453 -15270705 - L1MC4 LINE L1 -1355 6687 6614 197 364 0 0 chr3 202766529 202766595 -15270563 + L2 LINE L2 3203 3268 -4 380 333 124 44 chr3 202767677 202768130 -15269028 + L2 LINE L2 2363 2851 -463 449 271 8 17 chr3 202768184 202768302 -15268856 - L2 LINE L2 -18 3295 3179 268 180 112 45 chr3 202768761 202768850 -15268308 - L1ME1 LINE L1 -203 5963 5869 1392 132 73 0 chr3 202768852 202769127 -15268031 - LOR1a LTR ERV1 0 497 133 3845 124 33 18 chr3 202769127 202769860 -15267298 - LOR1-int LTR ERV1 -5851 2269 1526 427 206 20 0 chr3 202769961 202770063 -15267095 + L1ME1 LINE L1 5757 5860 -306 1622 164 206 5 chr3 202770074 202770457 -15266701 + LOR1b LTR ERV1 2 461 0 393 167 28 0 chr3 202770457 202770529 -15266629 + LOR1b-int LTR ERV1 2 75 -8045 748 79 26 0 chr3 202770529 202770643 -15266515 - THE1C LTR MaLR 0 375 259 3115 133 78 2 chr3 202770643 202771156 -15266002 + THE1-int LTR MaLR 330 881 -699 1272 187 66 7 chr3 202771370 202771675 -15265483 + MER33 DNA MER1_type 2 324 0 334 214 245 13 chr3 202771770 202771929 -15265229 + L2 LINE L2 3118 3313 0 340 228 291 37 chr3 202772073 202772262 -15264896 + MIR SINE MIR 5 241 -21 273 174 71 71 chr3 202772823 202772921 -15264237 + MLT1L LTR MaLR 514 611 -4 222 259 0 0 chr3 202774384 202774438 -15262720 + (TG)n Simple_repeat Simple_repeat 1 54 0 2302 138 20 72 chr3 202774717 202775173 -15261985 - MSTB1 LTR MaLR 0 432 1 1098 122 13 0 chr3 202776906 202777062 -15260096 + AluSg/x SINE Alu 134 291 -21 22 0 0 0 chr3 202777062 202777084 -15260074 + AT_rich Low_complexity Low_complexity 1 22 0 576 215 21 14 chr3 202777256 202777400 -15259758 - MLT1I LTR MaLR 0 409 265 846 274 31 10 chr3 202777484 202777863 -15259295 - LTR16A LTR ERVL -7 443 1 816 300 51 25 chr3 202778070 202778560 -15258598 - HERVL LTR ERVL -436 5218 4716 550 227 196 36 chr3 202778793 202778987 -15258171 + MIR SINE MIR 38 262 0 2256 34 0 0 chr3 202779039 202779301 -15257857 + AluY SINE Alu 1 262 -49 783 278 24 0 chr3 202779600 202779805 -15257353 + MIR SINE MIR 47 256 -6 558 154 0 16 chr3 202781196 202781319 -15255839 - L1MA3 LINE L1 -243 6062 5942 345 169 0 0 chr3 202781426 202781485 -15255673 + L1 LINE L1 3607 3665 -2481 7419 177 7 7 chr3 202781511 202783537 -15253621 + L1P5 LINE L1 3668 5685 -466 483 319 9 0 chr3 202784078 202784194 -15252964 + L2 LINE L2 3147 3263 -9 215 286 71 12 chr3 202784247 202784331 -15252827 - MIR SINE MIR -173 89 1 782 266 62 9 chr3 202785054 202785280 -15251878 + MIR SINE MIR 25 262 0 227 122 0 0 chr3 202785291 202785332 -15251826 - L1MA7 LINE L1 0 6291 6251 248 206 137 10 chr3 202785369 202785471 -15251687 - L1M4 LINE L1 -841 5305 5191 4724 148 65 18 chr3 202785491 202785966 -15251192 - L1MA6 LINE L1 0 6300 5849 225 0 0 0 chr3 202785966 202785991 -15251167 + (TG)n Simple_repeat Simple_repeat 2 26 0 4724 148 65 18 chr3 202785991 202786269 -15250889 - L1MA6 LINE L1 -451 5849 5586 2394 73 0 3 chr3 202786269 202786569 -15250589 - AluY SINE Alu -12 299 1 4724 148 65 18 chr3 202786569 202786810 -15250348 - L1MA6 LINE L1 -714 5586 5258 3866 220 32 3 chr3 202786820 202787831 -15249327 - L1M4 LINE L1 -2886 3260 2221 770 227 91 19 chr3 202787833 202788114 -15249044 + MSTC LTR MaLR 87 428 0 229 297 50 79 chr3 202788701 202788802 -15248356 - L2 LINE L2 -27 3245 3148 595 254 44 73 chr3 202789067 202789315 -15247843 - MIR SINE MIR -21 241 1 248 0 0 0 chr3 202789347 202789376 -15247782 - L1P2 LINE L1 -382 5772 5744 643 25 0 0 chr3 202789376 202789456 -15247702 + L1PA5 LINE L1 6074 6153 -1 2774 137 2 2 chr3 202790183 202790620 -15246538 + L1PB3 LINE L1 5718 6154 0 741 214 0 107 chr3 202791788 202792022 -15245136 - MER3 DNA MER1_type 0 209 1 22 0 0 0 chr3 202792712 202792734 -15244424 + AT_rich Low_complexity Low_complexity 1 22 0 201 387 75 0 chr3 202792980 202793086 -15244072 + L2 LINE L2 3151 3264 -8 2072 117 0 3 chr3 202793318 202793601 -15243557 - AluSx SINE Alu -30 282 1 2868 181 5 32 chr3 202793618 202794235 -15242923 + L1MB5 LINE L1 5561 6160 -14 2181 166 67 15 chr3 202794241 202794644 -15242514 - MSTA LTR MaLR -4 424 1 617 107 0 10 chr3 202794644 202794747 -15242411 - MSTA-int LTR MaLR 0 1651 1550 * 7329 172 35 2 chr3 202794746 202796097 -15241061 - MSTA-int LTR MaLR -256 1395 1 2224 158 61 19 chr3 202796097 202796508 -15240650 - MSTA LTR MaLR 0 428 1 258 233 33 92 chr3 202796878 202796998 -15240160 - L3 LINE CR1 -882 695 583 216 349 40 53 chr3 202797195 202797347 -15239811 - L3 LINE CR1 -939 638 489 671 103 113 113 chr3 202797364 202797487 -15239671 - L1MA7 LINE L1 -51 6240 6115 947 9 0 0 chr3 202797487 202797596 -15239562 - L1PA2 LINE L1 0 6155 6047 671 103 113 113 chr3 202797596 202797657 -15239501 - L1MA7 LINE L1 -175 6116 6056 496 318 36 15 chr3 202797660 202797855 -15239303 + MIR SINE MIR 58 256 -6 252 224 79 46 chr3 202797932 202798084 -15239074 - L1M4 LINE L1 -777 5369 5213 21 0 0 0 chr3 202798086 202798107 -15239051 + AT_rich Low_complexity Low_complexity 1 21 0 624 346 138 0 chr3 202798143 202798594 -15238564 - L1M4 LINE L1 -1043 5103 4591 392 327 59 12 chr3 202798725 202799144 -15238014 - L1M4 LINE L1 -1712 4434 4000 309 358 20 34 chr3 202799488 202799636 -15237522 + MIR3 SINE MIR 17 162 -46 381 55 0 0 chr3 202799656 202799711 -15237447 - L1PA3 LINE L1 0 6155 6101 461 299 0 0 chr3 202799784 202799911 -15237247 + Charlie2b DNA MER1_type 172 298 -2564 504 167 44 9 chr3 202799938 202800052 -15237106 + Charlie2b DNA MER1_type 567 684 -2098 785 226 0 0 chr3 202800106 202800274 -15236884 + Charlie2a DNA MER1_type 1498 1665 -1197 297 199 12 127 chr3 202800260 202800426 -15236732 + Charlie2a DNA MER1_type 2700 2846 -16 * 189 0 0 0 chr3 202800925 202800946 -15236212 + (T)n Simple_repeat Simple_repeat 1 21 0 240 307 74 113 chr3 202801154 202801567 -15235591 - L2 LINE L2 0 3272 2877 333 0 0 0 chr3 202801567 202801604 -15235554 + (CA)n Simple_repeat Simple_repeat 2 38 0 240 307 74 113 chr3 202801604 202801649 -15235509 - L2 LINE L2 -395 2877 2832 472 320 8 0 chr3 202802952 202803080 -15234078 + MIR3 SINE MIR 15 143 -65 2551 171 17 10 chr3 202803080 202803659 -15233499 - L1M3 LINE L1 -735 5433 4847 207 0 0 0 chr3 202803661 202803684 -15233474 + (TA)n Simple_repeat Simple_repeat 2 24 0 2252 167 0 5 chr3 202803697 202804099 -15233059 + L1MB1 LINE L1 5414 5813 -355 579 144 6 120 chr3 202804097 202804264 -15232894 + L1MB1 LINE L1 6016 6163 -5 * 1891 138 0 25 chr3 202804380 202804663 -15232495 + AluSx SINE Alu 5 280 -32 1118 104 0 6 chr3 202804671 202804844 -15232314 + (GAA)n Simple_repeat Simple_repeat 1 172 0 682 150 7 14 chr3 202804848 202804988 -15232170 + GA-rich Low_complexity Low_complexity 6 144 0 243 0 0 0 chr3 202805041 202805068 -15232090 + (TG)n Simple_repeat Simple_repeat 2 28 0 188 290 48 16 chr3 202805556 202805618 -15231540 - MIR SINE MIR -123 85 22 655 317 27 0 chr3 202806234 202806420 -15230738 - MIR SINE MIR -47 215 25 276 316 105 18 chr3 202806535 202806649 -15230509 - MIR3 SINE MIR -38 170 47 707 208 0 0 chr3 202806796 202806916 -15230242 - FLAM_A SINE Alu -13 120 1 22 35 0 0 chr3 202807698 202807727 -15229431 + AT_rich Low_complexity Low_complexity 1 29 0 263 330 37 26 chr3 202808295 202808486 -15228672 + L2 LINE L2 2043 2235 -1079 217 227 0 0 chr3 202808569 202808613 -15228545 + L2 LINE L2 3270 3313 0 236 247 67 27 chr3 202809786 202809936 -15227222 + L1ME LINE L1 5729 5884 -237 42 0 0 0 chr3 202810480 202810522 -15226636 + AT_rich Low_complexity Low_complexity 1 42 0 2379 101 19 27 chr3 202810601 202810968 -15226190 - THE1B LTR MaLR 0 364 1 201 291 91 0 chr3 202810968 202811023 -15226135 - MER91A DNA MER1_type -4 186 127 479 297 58 0 chr3 202811054 202811192 -15225966 - MER91A DNA MER1_type -25 171 26 521 227 28 74 chr3 202811561 202811737 -15225421 + MIR3 SINE MIR 41 208 0 956 247 45 47 chr3 202812045 202812286 -15224872 - L1MC/D LINE L1 -804 5342 5354 204 111 0 0 chr3 202812286 202812322 -15224836 + (TG)n Simple_repeat Simple_repeat 1 36 0 956 247 45 47 chr3 202812322 202812719 -15224439 - L1MC/D LINE L1 -791 5355 4959 659 224 120 12 chr3 202812725 202812792 -15224366 + L1MC4a LINE L1 6918 6976 -832 198 71 0 0 chr3 202812792 202812820 -15224338 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 659 224 120 12 chr3 202812820 202812993 -15224165 + L1MC4a LINE L1 6976 7184 -624 3894 155 91 48 chr3 202813094 202814069 -15223089 + L1MA7 LINE L1 5275 6291 0 195 356 44 22 chr3 202814175 202814355 -15222803 + L2 LINE L2 2628 2811 -503 436 290 40 8 chr3 202814364 202814488 -15222670 + MIR SINE MIR 26 153 -109 1965 141 0 0 chr3 202814772 202815056 -15222102 - AluJb SINE Alu -28 284 1 274 313 17 26 chr3 202815988 202816103 -15221055 + L2 LINE L2 3191 3304 -9 1468 317 100 14 chr3 202818072 202818952 -15218206 + L2 LINE L2 2348 3304 -9 277 298 96 0 chr3 202822153 202822257 -15214901 - L2 LINE L2 -9 3304 3191 453 225 169 56 chr3 202822330 202822490 -15214668 - MER5B DNA MER1_type 0 178 1 471 281 30 61 chr3 202823864 202824028 -15213130 + MIR SINE MIR 39 197 -65 975 260 62 17 chr3 202824123 202824415 -15212743 - L2 LINE L2 0 3313 3009 207 209 0 23 chr3 202825611 202825654 -15211504 + MIR SINE MIR 19 60 -148 449 289 7 35 chr3 202826765 202826907 -15210251 - MIR3 SINE MIR -68 140 3 24 53 0 0 chr3 202827266 202827304 -15209854 + AT_rich Low_complexity Low_complexity 1 38 0 3548 106 66 9 chr3 202827376 202827954 -15209204 - HSMAR2 DNA Mariner -1 1301 691 211 172 0 35 chr3 202827966 202828024 -15209134 + T-rich Low_complexity Low_complexity 5 60 0 2177 132 20 6 chr3 202828024 202828381 -15208777 - L1PB1 LINE L1 -8 6143 5782 4690 174 7 35 chr3 202828407 202829278 -15207880 - L1PB1 LINE L1 -493 5658 4765 2550 40 7 3 chr3 202829278 202829581 -15207577 - AluY SINE Alu -7 304 1 4690 174 7 35 chr3 202829581 202830020 -15207138 - L1PB1 LINE L1 -1386 4765 4402 501 62 0 0 chr3 202830020 202830085 -15207073 + (TTGTG)n Simple_repeat Simple_repeat 4 68 0 4690 174 7 35 chr3 202830085 202830355 -15206803 - L1PB1 LINE L1 -1749 4402 4126 2269 46 3 28 chr3 202830455 202830740 -15206418 - AluY SINE Alu -33 278 1 352 325 71 19 chr3 202830808 202830962 -15206196 + MIR3 SINE MIR 41 202 -6 21 36 0 0 chr3 202830968 202830996 -15206162 + AT_rich Low_complexity Low_complexity 1 28 0 323 248 86 29 chr3 202831299 202831404 -15205754 - MIR SINE MIR -58 204 94 395 314 50 0 chr3 202832042 202832163 -15204995 + MIR SINE MIR 62 188 -74 22 35 0 0 chr3 202833089 202833118 -15204040 + AT_rich Low_complexity Low_complexity 1 29 0 261 293 121 20 chr3 202833156 202833255 -15203903 - MIR SINE MIR -153 109 1 2474 81 3 3 chr3 202833660 202833995 -15203163 + L1PA13 LINE L1 5827 6161 -2 210 364 25 17 chr3 202834950 202835068 -15202090 - MER5A DNA MER1_type -35 154 36 2150 78 89 0 chr3 202835546 202835828 -15201330 - AluSg SINE Alu -3 307 1 234 91 0 0 chr3 202835936 202835969 -15201189 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 596 70 12 0 chr3 202835978 202836064 -15201094 + (GGAA)n Simple_repeat Simple_repeat 2 88 0 1007 261 92 27 chr3 202837308 202837676 -15199482 + LTR16C LTR ERVL 100 491 0 251 233 47 23 chr3 202838627 202838713 -15198445 - MER117 DNA MER1_type -109 88 1 425 349 72 6 chr3 202839094 202839260 -15197898 - MIR3 SINE MIR -22 186 10 1469 217 43 27 chr3 202839531 202839899 -15197259 + MLT1A2 LTR MaLR 1 374 0 489 308 55 91 chr3 202840912 202841220 -15195938 - L2 LINE L2 -7 3265 2969 290 248 49 34 chr3 202841414 202841685 -15195473 + L1MD2 LINE L1 5081 5360 -794 624 177 0 0 chr3 202841740 202841853 -15195305 + L1MD2 LINE L1 5551 5663 -696 1422 266 80 6 chr3 202841889 202842397 -15194761 + L1MD2 LINE L1 5810 6357 -2 477 0 0 0 chr3 202842735 202842788 -15194370 + (TA)n Simple_repeat Simple_repeat 2 54 0 2562 88 11 0 chr3 202842792 202843144 -15194014 + L1PB1 LINE L1 5796 6151 0 10145 175 30 5 chr3 202843155 202845309 -15191849 + L1 LINE L1 2778 4985 -1161 323 315 110 7 chr3 202845313 202845459 -15191699 - L1ME LINE L1 -576 5545 5385 213 262 12 60 chr3 202845558 202845642 -15191516 - MIR SINE MIR -97 165 86 341 232 11 0 chr3 202846302 202846397 -15190761 + (TA)n Simple_repeat Simple_repeat 2 97 0 231 214 0 29 chr3 202846587 202846657 -15190501 - L1MC4 LINE L1 -1339 6703 6636 213 244 0 0 chr3 202846760 202846801 -15190357 - L2 LINE L2 -12 3260 3220 1338 141 7 40 chr3 202848060 202848336 -15188822 - L1MB8 LINE L1 -6 6172 5906 405 229 89 76 chr3 202848349 202848506 -15188652 - MIR SINE MIR -93 169 11 250 298 36 36 chr3 202848434 202848518 -15188640 + MIR3 SINE MIR 6 89 -119 * 217 330 0 23 chr3 202848606 202848694 -15188464 - L2 LINE L2 -869 2445 2360 213 200 0 0 chr3 202848992 202849032 -15188126 + (TG)n Simple_repeat Simple_repeat 1 40 0 191 283 54 54 chr3 202849296 202849388 -15187770 + MIR SINE MIR 77 168 -94 24 53 0 0 chr3 202850597 202850635 -15186523 + AT_rich Low_complexity Low_complexity 1 38 0 367 292 55 17 chr3 202850645 202850936 -15186222 + L1M4 LINE L1 2469 2770 -3376 423 248 37 0 chr3 202852161 202852270 -15184888 - MIR SINE MIR -32 230 118 1190 194 25 35 chr3 202852376 202852660 -15184498 - MER58B DNA MER1_type 0 341 61 201 213 0 0 chr3 202852720 202852767 -15184391 + GA-rich Low_complexity Low_complexity 2 48 0 311 277 96 58 chr3 202852772 202852960 -15184198 + L1ME4a LINE L1 5613 5807 -355 444 203 70 0 chr3 202853091 202853219 -15183939 + L1ME4a LINE L1 5984 6120 -1 324 358 75 17 chr3 202853796 202854036 -15183122 + L2 LINE L2 191 444 -2870 318 365 127 24 chr3 202854208 202855211 -15181947 + L2 LINE L2 892 1997 -1317 227 315 62 15 chr3 202855559 202855689 -15181469 + MIR SINE MIR 117 252 -10 418 295 78 18 chr3 202857631 202857797 -15179361 + MIR SINE MIR 3 178 -84 657 286 61 82 chr3 202857840 202858364 -15178794 + MER34 LTR ERV1 1 513 -29 778 217 98 0 chr3 202858587 202858790 -15178368 - MER58A DNA MER1_type 0 224 2 790 237 151 67 chr3 202859145 202859596 -15177562 - MLT1H1 LTR MaLR 0 555 67 269 242 32 0 chr3 202860033 202860095 -15177063 - L3 LINE CR1 -8 1569 1506 502 209 0 82 chr3 202860166 202860300 -15176858 - MIR SINE MIR -70 192 70 279 0 0 0 chr3 202862248 202862279 -15174879 + (A)n Simple_repeat Simple_repeat 1 31 0 313 318 0 0 chr3 202862681 202862766 -15174392 - MIR SINE MIR -108 154 70 565 317 94 82 chr3 202863340 202863804 -15173354 - L2 LINE L2 -15 3257 2787 188 122 24 0 chr3 202864269 202864310 -15172848 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 22 56 0 0 chr3 202864341 202864377 -15172781 + AT_rich Low_complexity Low_complexity 1 36 0 256 223 184 39 chr3 202864546 202864649 -15172509 + MER5B DNA MER1_type 2 119 -59 2284 104 45 25 chr3 202865854 202866211 -15170947 - THE1B LTR MaLR 0 364 1 321 359 72 7 chr3 202866386 202866568 -15170590 + MIR SINE MIR 8 197 -62 2303 157 101 19 chr3 202866623 202867088 -15170070 - MLT1D LTR MaLR -2 503 1 1328 253 67 47 chr3 202867104 202867613 -15169545 + LTR33 LTR ERVL 1 519 -2 391 305 130 7 chr3 202867771 202867925 -15169233 + L2 LINE L2 2879 3051 -221 412 277 57 19 chr3 202868148 202868307 -15168851 - MIR SINE MIR -57 205 41 660 325 25 25 chr3 202868326 202868569 -15168589 - MIR SINE MIR 0 262 20 342 252 112 0 chr3 202868921 202869028 -15168130 + L2 LINE L2 3190 3308 -5 711 212 53 0 chr3 202869301 202869452 -15167706 - MIR SINE MIR -11 251 93 5075 85 16 7 chr3 202869748 202870451 -15166707 + L1PA11 LINE L1 5466 6174 0 260 384 67 12 chr3 202871089 202871253 -15165905 + MIR3 SINE MIR 11 183 -25 317 310 35 21 chr3 202871825 202871970 -15165188 + L1 LINE L1 4873 5019 -1127 1899 134 73 25 chr3 202872046 202872404 -15164754 - THE1C LTR MaLR 0 375 1 4154 102 9 17 chr3 202872404 202873048 -15164110 - THE1C-int LTR MaLR 0 1580 942 957 90 0 0 chr3 202873048 202873181 -15163977 - MLT2A2 LTR ERVL -320 133 1 871 204 23 11 chr3 202873361 202873537 -15163621 + MER45A DNA AcHobo 1 178 0 677 280 142 20 chr3 202873735 202874031 -15163127 - L2 LINE L2 -1 3271 2940 2392 164 28 5 chr3 202874202 202874624 -15162534 + MSTB1 LTR MaLR 1 432 0 257 320 13 0 chr3 202874802 202874880 -15162278 - MER58B DNA MER1_type -262 79 1 186 203 17 68 chr3 202874897 202874956 -15162202 + L2 LINE L2 2921 2976 -338 218 250 0 0 chr3 202875176 202875228 -15161930 + L2 LINE L2 3255 3306 -7 286 149 43 11 chr3 202875232 202875293 -15161865 - MIR SINE MIR -94 168 106 525 143 48 0 chr3 202875457 202875541 -15161617 + FLAM_A SINE Alu 33 120 -22 7107 54 0 1 chr3 202876159 202877576 -15159582 - L1PA5 LINE L1 0 6154 4739 28880 71 17 10 chr3 202877577 202881726 -15155432 + L1PA5 LINE L1 559 4734 -1412 202 204 45 0 chr3 202882057 202882101 -15155057 + CT-rich Low_complexity Low_complexity 1 46 0 417 298 15 15 chr3 202882530 202882661 -15154497 - MIR3 SINE MIR -45 163 33 200 343 15 0 chr3 202882893 202882960 -15154198 + MIR SINE MIR 173 240 -22 1502 199 52 28 chr3 202883152 202883514 -15153644 - MLT1A2 LTR MaLR 0 374 4 22 70 0 0 chr3 202883545 202883588 -15153570 + AT_rich Low_complexity Low_complexity 1 43 0 1921 188 25 116 chr3 202883968 202884386 -15152772 + L1M1 LINE L1 12 369 -7196 4156 91 23 7 chr3 202884386 202884989 -15152169 - L1PA14 LINE L1 -3 6158 5546 1921 188 25 116 chr3 202884989 202885124 -15152034 + L1M1 LINE L1 369 515 -7050 32532 103 8 31 chr3 202885135 202891423 -15145735 + L1PA7 LINE L1 12 6152 -2 3341 201 3 2 chr3 202891497 202892114 -15145044 + L1M1 LINE L1 496 1113 -6452 5651 128 187 90 chr3 202892117 202893662 -15143496 - pTR5 LTR ERV1 0 2438 744 14035 159 22 10 chr3 202893662 202896720 -15140438 + L1M1 LINE L1 1109 4206 -3359 1030 163 5 0 chr3 202896743 202896933 -15140225 + L1PBa LINE L1 7 197 -6666 12021 143 89 5 chr3 202896934 202900251 -15136907 + L1PBa LINE L1 634 4228 -2634 745 279 77 20 chr3 202900846 202901093 -15136065 + MIR SINE MIR 2 262 0 216 130 0 0 chr3 202901908 202901954 -15135204 + (A)n Simple_repeat Simple_repeat 1 46 0 395 351 184 10 chr3 202902373 202902852 -15134306 + L2 LINE L2 2158 2719 -595 573 307 35 47 chr3 202903597 202903851 -15133307 + L2 LINE L2 2814 3064 -249 1023 226 11 26 chr3 202904036 202904302 -15132856 - MLT1K LTR MaLR 0 588 327 228 320 0 0 chr3 202904307 202904357 -15132801 - L2 LINE L2 -61 3211 3162 295 322 73 39 chr3 202905045 202905277 -15131881 - MIR SINE MIR -12 250 5 955 311 34 70 chr3 202906187 202906615 -15130543 - L2 LINE L2 -2 3311 2900 2157 123 0 10 chr3 202906615 202906924 -15130234 + AluSx SINE Alu 1 306 -6 955 311 34 70 chr3 202906924 202906965 -15130193 - L2 LINE L2 -413 2900 2859 213 94 0 0 chr3 202907138 202907170 -15129988 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 185 304 0 0 chr3 202907592 202907638 -15129520 - L2 LINE L2 -4 3268 3223 239 155 155 48 chr3 202907982 202908085 -15129073 + L1ME4a LINE L1 5833 5946 -175 73 12 0 0 chr3 202908199 202908279 -15128879 + AT_rich Low_complexity Low_complexity 1 80 0 360 59 0 0 chr3 202909180 202909231 -15127927 + (TG)n Simple_repeat Simple_repeat 2 52 0 206 267 191 29 chr3 202909487 202909592 -15127566 + L2 LINE L2 3178 3299 -14 324 0 0 0 chr3 202909803 202909839 -15127319 + (TG)n Simple_repeat Simple_repeat 1 36 0 1882 108 0 90 chr3 202912235 202912568 -15124590 + AluSg SINE Alu 1 303 -7 417 20 0 0 chr3 202912640 202912690 -15124468 + (TG)n Simple_repeat Simple_repeat 2 51 0 235 216 39 0 chr3 202912892 202912943 -15124215 + MIR SINE MIR 49 101 -107 204 362 0 0 chr3 202913095 202913153 -15124005 + L2 LINE L2 3128 3185 -87 204 362 0 0 chr3 202913761 202913819 -15123339 + L2 LINE L2 3128 3185 -87 535 256 107 19 chr3 202915583 202915798 -15121360 - L1ME1 LINE L1 -18 6148 5915 394 314 138 0 chr3 202916283 202916442 -15120716 + MIR SINE MIR 82 262 0 315 339 47 47 chr3 202916465 202916592 -15120566 + L2 LINE L2 3119 3245 -27 214 175 0 0 chr3 202916619 202916659 -15120499 - L2 LINE L2 0 3313 3274 285 374 52 9 chr3 202917383 202917498 -15119660 + L2 LINE L2 3149 3268 -4 190 358 32 0 chr3 202917574 202917669 -15119489 + L2 LINE L2 3173 3270 -2 346 254 85 146 chr3 202917803 202918298 -15118860 - L2 LINE L2 -1060 2254 1790 5767 118 15 14 chr3 202919354 202920910 -15116248 - L1PA15 LINE L1 -1 6164 4607 3441 184 20 0 chr3 202920912 202921604 -15115554 + L1PA15 LINE L1 3896 4601 -1545 547 281 41 4 chr3 202922064 202922251 -15114907 - MIR SINE MIR -54 208 15 426 314 41 0 chr3 202924058 202924179 -15112979 + MIR3 SINE MIR 6 131 -77 195 277 0 0 chr3 202924587 202924634 -15112524 + MIR3 SINE MIR 151 197 -11 321 259 25 12 chr3 202925952 202926033 -15111125 + MIR SINE MIR 11 92 -170 234 284 0 95 chr3 202926455 202926571 -15110587 + MIR SINE MIR 102 206 -56 471 330 43 14 chr3 202927249 202927483 -15109675 + MIR3 SINE MIR 6 253 -9 1814 158 10 45 chr3 202927661 202928059 -15109099 + MLT1B LTR MaLR 7 390 0 324 180 49 0 chr3 202928897 202928958 -15108200 - MIR SINE MIR -83 179 116 1605 179 63 47 chr3 202929126 202929572 -15107586 - MLT1C LTR MaLR -9 458 6 2604 230 39 31 chr3 202930652 202931042 -15106116 + L1ME2 LINE L1 5237 5622 -542 7590 42 2 0 chr3 202931042 202932743 -15104415 + L1PA4 LINE L1 4452 6155 0 2604 230 39 31 chr3 202932743 202933245 -15103913 + L1ME2 LINE L1 5622 6145 -19 302 0 26 0 chr3 202933249 202933287 -15103871 + (GA)n Simple_repeat Simple_repeat 1 39 0 206 254 55 18 chr3 202933301 202933356 -15103802 + MIR SINE MIR 20 76 -186 * 407 291 0 43 chr3 202933353 202933470 -15103688 - L2 LINE L2 -1 3312 3201 387 301 18 9 chr3 202933587 202933700 -15103458 + MIR SINE MIR 73 186 -76 310 322 18 53 chr3 202934158 202934329 -15102829 + MER5A DNA MER1_type 17 181 -8 846 155 20 0 chr3 202984502 202984650 -15052508 - HERVH LTR ERV1 -4423 3290 3140 * 9192 154 22 30 chr3 202984644 202987892 -15049266 - HERVH LTR ERV1 -4625 2029 1 2711 98 128 0 chr3 202987894 202988291 -15048867 - LTR7 LTR ERV1 -2 448 1 1901 149 3 22 chr3 202988332 202988647 -15048511 - AluSx SINE Alu -3 309 1 336 248 126 20 chr3 202988745 202988943 -15048215 - L1ME4a LINE L1 -5 6116 5898 815 236 38 0 chr3 202989252 202989464 -15047694 - L1ME4a LINE L1 -239 5882 5663 5603 156 29 36 chr3 202989585 202990588 -15046570 - L1MC1 LINE L1 -5 6328 5331 2462 121 3 3 chr3 202990588 202990934 -15046224 - L1PA13 LINE L1 -3 6160 5815 5603 156 29 36 chr3 202990934 202990997 -15046161 - L1MC1 LINE L1 -1002 5331 5269 220 331 101 36 chr3 202991191 202991608 -15045550 - L2 LINE L2 -1152 2162 1719 403 269 128 65 chr3 202991697 202992107 -15045051 + LTR33 LTR ERVL 15 461 -60 2052 131 0 10 chr3 202992107 202992405 -15044753 - AluSx SINE Alu -17 295 1 403 269 128 65 chr3 202992405 202992470 -15044688 + LTR33 LTR ERVL 461 520 -1 184 250 23 0 chr3 202994037 202994081 -15043077 - MIR SINE MIR -88 120 76 323 312 84 19 chr3 202994128 202994322 -15042836 - MIR3 SINE MIR -24 238 34 582 339 135 3 chr3 202994981 202995270 -15041888 - L3 LINE CR1 -73 1504 1178 751 249 161 26 chr3 202995385 202995734 -15041424 - L1ME4a LINE L1 -128 5993 5598 2992 134 30 81 chr3 202995829 202996293 -15040865 + L1PB4 LINE L1 5597 6026 -130 2202 125 0 3 chr3 202996293 202996606 -15040552 + AluSx SINE Alu 1 312 0 2992 134 30 81 chr3 202996606 202996731 -15040427 + L1PB4 LINE L1 6026 6156 0 3614 214 14 15 chr3 202997086 202997936 -15039222 + L1M4 LINE L1 4168 5016 -1130 722 220 19 48 chr3 202997928 202998137 -15039021 - L1ME4a LINE L1 -1302 4844 4642 * 4358 184 42 25 chr3 202998128 202999235 -15037923 + L1MB7 LINE L1 5058 6181 -3 246 227 45 0 chr3 202999254 202999320 -15037838 - L1ME LINE L1 -526 5595 5527 246 325 33 60 chr3 202999325 202999476 -15037682 - L3 LINE CR1 -406 1171 1025 2464 79 0 0 chr3 203000039 203000342 -15036816 + AluSc SINE Alu 1 303 -6 242 166 12 6 chr3 203000436 203000690 -15036468 + AluJo SINE Alu 1 299 -1 233 204 0 0 chr3 203001444 203001488 -15035670 + L1ME4a LINE L1 6078 6121 0 337 333 0 0 chr3 203001662 203001749 -15035409 + L2 LINE L2 3186 3272 0 1569 133 38 0 chr3 203001805 203002068 -15035090 + L1MA5A LINE L1 6020 6292 -5 364 247 12 0 chr3 203002525 203002606 -15034552 + MER5A DNA MER1_type 28 109 -80 1131 238 65 67 chr3 203003719 203004164 -15032994 + MLT1J1 LTR MaLR 3 446 0 1098 209 116 11 chr3 203006766 203007034 -15030124 + MSTD LTR MaLR 101 396 0 213 227 53 53 chr3 203007509 203007584 -15029574 + MIR SINE MIR 1 75 -133 962 177 25 0 chr3 203007862 203008065 -15029093 - MER33 DNA MER1_type 0 324 117 314 261 91 0 chr3 203008053 203008141 -15029017 - MER33 DNA MER1_type -228 96 1 * 201 356 17 25 chr3 203008156 203008274 -15028884 + MIR SINE MIR 117 233 -29 546 272 110 26 chr3 203008876 203009067 -15028091 - MIR SINE MIR -25 237 31 295 322 81 7 chr3 203009093 203009242 -15027916 - L2 LINE L2 -161 3111 2952 209 303 67 11 chr3 203009612 203009701 -15027457 + MIR SINE MIR 50 143 -119 2893 220 53 29 chr3 203010589 203011348 -15025810 + L1MC4 LINE L1 7109 7885 -157 271 333 71 7 chr3 203011348 203011489 -15025669 - MIR3 SINE MIR -8 200 51 340 222 123 51 chr3 203011752 203011932 -15025226 + MIR SINE MIR 9 205 -57 900 285 106 16 chr3 203012062 203012564 -15024594 - L1ME4a LINE L1 -1 6120 5574 1475 193 39 14 chr3 203012565 203012850 -15024308 + AluJo SINE Alu 1 292 -20 230 207 35 17 chr3 203012871 203012929 -15024229 - L1ME4a LINE L1 -538 5583 5525 1903 143 4 0 chr3 203013001 203013320 -15023838 + AluSg SINE Alu 1 320 0 222 233 0 0 chr3 203013448 203013491 -15023667 - L2 LINE L2 -27 3245 3203 1619 167 7 14 chr3 203013512 203013794 -15023364 + AluJo SINE Alu 8 287 -25 204 40 0 0 chr3 203013797 203013822 -15023336 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 423 56 0 0 chr3 203014175 203014229 -15022929 + (TG)n Simple_repeat Simple_repeat 1 54 0 1063 220 44 16 chr3 203014428 203014678 -15022480 + MLT2F LTR ERVL 328 584 -79 637 156 170 7 chr3 203014677 203014818 -15022340 + MLT2F LTR ERVL 500 663 0 * 780 343 106 30 chr3 203014864 203015677 -15021481 - L2 LINE L2 -735 2579 1705 2082 115 0 39 chr3 203015693 203015998 -15021160 + AluSx SINE Alu 1 293 -19 2040 124 17 3 chr3 203016000 203016298 -15020860 + AluSx SINE Alu 1 302 -10 239 362 20 53 chr3 203016442 203016594 -15020564 - L2 LINE L2 -1305 2009 1863 834 327 52 22 chr3 203016695 203016994 -15020164 + L1ME4a LINE L1 5478 5767 -354 2326 209 14 95 chr3 203016994 203017150 -15020008 + MER87 LTR ERV1 2 169 -372 2284 118 0 0 chr3 203017150 203017454 -15019704 - AluSq SINE Alu -9 304 1 2326 209 14 95 chr3 203017454 203017885 -15019273 + MER87 LTR ERV1 169 541 0 834 327 52 22 chr3 203017885 203018184 -15018974 + L1ME4a LINE L1 5767 6094 -27 31 58 0 0 chr3 203018225 203018277 -15018881 + AT_rich Low_complexity Low_complexity 1 52 0 2070 17 0 0 chr3 203018277 203018512 -15018646 - L1PA4 LINE L1 -138 6017 5783 1501 0 0 0 chr3 203018512 203018675 -15018483 + L1PA4 LINE L1 5639 5801 -354 2055 83 19 0 chr3 203020760 203021026 -15016132 + AluSp SINE Alu 1 271 -42 184 29 29 29 chr3 203021026 203021060 -15016098 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 961 239 29 0 chr3 203021379 203021588 -15015570 + MER58A DNA MER1_type 9 223 -1 470 284 20 46 chr3 203021619 203021922 -15015236 - L1ME4a LINE L1 -13 6108 5814 716 48 0 0 chr3 203022011 203022094 -15015064 - AluSq SINE Alu -11 302 220 1116 102 7 0 chr3 203022094 203022241 -15014917 - AluSq SINE Alu -163 150 3 365 291 73 58 chr3 203022627 203022888 -15014270 - L2 LINE L2 -997 2317 2053 186 325 80 37 chr3 203022854 203023017 -15014141 - MIR SINE MIR -12 250 81 * 523 316 104 9 chr3 203023208 203023439 -15013719 + L2 LINE L2 2423 2675 -639 184 211 275 0 chr3 203023532 203023641 -15013517 + L2 LINE L2 1935 2073 -1241 22 80 0 0 chr3 203024196 203024246 -15012912 + AT_rich Low_complexity Low_complexity 1 50 0 34 65 0 0 chr3 203024278 203024340 -15012818 + AT_rich Low_complexity Low_complexity 1 62 0 2608 51 0 6 chr3 203025237 203025548 -15011610 + AluY SINE Alu 1 309 -2 2015 147 7 7 chr3 203025946 203026245 -15010913 - AluJo SINE Alu -13 299 1 2358 66 0 3 chr3 203026293 203026579 -15010579 - AluY SINE Alu -9 302 18 2780 151 68 53 chr3 203026649 203027250 -15009908 + L1MB7 LINE L1 5566 6175 -9 230 310 97 82 chr3 203027367 203027427 -15009731 - L1ME4a LINE L1 -2063 5745 5687 1392 141 39 8 chr3 203027427 203027682 -15009476 + L1MA8 LINE L1 6025 6287 -4 230 310 97 82 chr3 203027682 203027693 -15009465 - L1ME4a LINE L1 -2121 5687 5678 2091 119 0 3 chr3 203027693 203027979 -15009179 + AluSx SINE Alu 1 285 -27 195 114 0 0 chr3 203027979 203028014 -15009144 + (TTAA)n Simple_repeat Simple_repeat 4 38 0 230 310 97 82 chr3 203028014 203028078 -15009080 - L1ME4a LINE L1 -2130 5678 5616 1537 183 60 3 chr3 203028078 203028363 -15008795 + AluJo SINE Alu 1 301 -11 230 310 97 82 chr3 203028363 203028553 -15008605 - L1ME4a LINE L1 -2192 5616 5412 2015 139 0 10 chr3 203028633 203028936 -15008222 + AluSg SINE Alu 1 300 -10 2044 133 0 3 chr3 203028991 203029291 -15007867 + AluSx SINE Alu 1 299 -13 201 359 33 0 chr3 203030170 203030262 -15006896 - L2 LINE L2 -5 3308 3214 258 192 39 0 chr3 203030267 203030319 -15006839 - MER91 DNA MER1_type -22 118 65 705 319 85 38 chr3 203030320 203030381 -15006777 - L2 LINE L2 -92 3221 3164 2026 132 0 10 chr3 203030381 203030670 -15006488 + AluSx SINE Alu 1 286 -26 242 93 0 23 chr3 203030672 203030715 -15006443 + (CAATA)n Simple_repeat Simple_repeat 2 43 0 705 319 85 38 chr3 203030715 203030955 -15006203 - L2 LINE L2 -149 3164 2937 1938 178 102 92 chr3 203030955 203031561 -15005597 + MER90 LTR ERV1 1 612 -2 705 319 85 38 chr3 203031561 203031756 -15005402 - L2 LINE L2 -376 2937 2685 278 83 0 0 chr3 203031951 203031987 -15005171 + U2 snRNA snRNA 1 36 -152 517 252 258 0 chr3 203032203 203032354 -15004804 + MIR SINE MIR 31 220 -42 2457 78 0 0 chr3 203032540 203032836 -15004322 - AluSq SINE Alu -17 296 1 261 238 63 16 chr3 203034054 203034117 -15003041 - MIR SINE MIR -152 110 45 2090 122 17 0 chr3 203034245 203034539 -15002619 - AluSg SINE Alu -11 299 1 21 57 0 0 chr3 203035514 203035549 -15001609 + AT_rich Low_complexity Low_complexity 1 35 0 428 304 114 36 chr3 203035872 203036092 -15001066 - MIR SINE MIR -9 253 17 2287 101 0 13 chr3 203037425 203037732 -14999426 - AluSq SINE Alu -10 303 1 242 325 57 24 chr3 203038273 203038396 -14998762 + MER5A DNA MER1_type 18 144 -45 1992 159 78 8 chr3 203038404 203038762 -14998396 - L1MD1 LINE L1 0 6242 5860 245 341 44 33 chr3 203038814 203038905 -14998253 + L2 LINE L2 3203 3294 -19 306 268 49 0 chr3 203038921 203039003 -14998155 + L2 LINE L2 3228 3313 0 501 271 84 6 chr3 203039077 203039243 -14997915 + MLT1J1 LTR MaLR 4 182 -264 5465 164 41 23 chr3 203039493 203040195 -14996963 + L1MA10 LINE L1 4818 5506 -828 2410 70 3 3 chr3 203040195 203040494 -14996664 + AluY SINE Alu 1 299 -12 5465 164 41 23 chr3 203040494 203040751 -14996407 + L1MA10 LINE L1 5506 5757 -577 1784 184 0 16 chr3 203040751 203041055 -14996103 + AluJo SINE Alu 5 303 -9 5465 164 41 23 chr3 203041055 203041522 -14995636 + L1MA10 LINE L1 5757 6283 -51 333 295 48 66 chr3 203041565 203041731 -14995427 + MLT1I LTR MaLR 198 360 -49 444 273 34 57 chr3 203041790 203041966 -14995192 + MLT1J2 LTR MaLR 279 450 0 207 342 66 0 chr3 203042086 203042162 -14994996 + L2 LINE L2 3140 3220 -52 824 183 0 8 chr3 203042468 203042594 -14994564 + FLAM_C SINE Alu 2 126 -17 321 333 90 40 chr3 203043472 203043649 -14993509 + L3 LINE CR1 903 1088 -489 350 262 152 19 chr3 203043663 203043786 -14993372 - L1ME4a LINE L1 -1 6120 6015 2303 110 7 0 chr3 203043786 203044095 -14993063 - AluSq SINE Alu -2 311 1 350 262 152 19 chr3 203044095 203044181 -14992977 - L1ME4a LINE L1 -106 6015 5883 30 45 0 0 chr3 203044616 203044660 -14992498 + AT_rich Low_complexity Low_complexity 1 44 0 2378 78 0 10 chr3 203044720 203045026 -14992132 - AluSx SINE Alu -9 303 1 595 288 44 22 chr3 203045062 203045288 -14991870 - MIR SINE MIR 0 262 32 186 339 111 18 chr3 203045309 203045480 -14991678 + L3 LINE CR1 1084 1270 -307 207 163 41 20 chr3 203045534 203045583 -14991575 + L3 LINE CR1 1396 1445 -132 22 0 0 0 chr3 203045985 203046007 -14991151 + GC_rich Low_complexity Low_complexity 1 22 0 531 256 123 24 chr3 203046334 203046562 -14990596 - MIR SINE MIR -12 250 1 274 274 28 66 chr3 203046800 203046906 -14990252 + MIR SINE MIR 19 120 -142 * 572 236 256 4 chr3 203046880 203047126 -14990032 - L2 LINE L2 -18 3295 2988 389 233 10 29 chr3 203047166 203047269 -14989889 - L2 LINE L2 -24 3289 3189 2166 107 7 7 chr3 203047304 203047613 -14989545 + AluSx SINE Alu 1 309 -3 203 216 81 40 chr3 203047645 203047719 -14989439 - L2 LINE L2 -233 3080 3004 1438 151 66 44 chr3 203048535 203048852 -14988306 + MER33 DNA MER1_type 1 324 0 585 298 194 38 chr3 203048913 203049383 -14987775 - L3 LINE CR1 -744 833 291 455 248 241 14 chr3 203049569 203049710 -14987448 + MIR SINE MIR 5 177 -85 21 0 0 0 chr3 203049914 203049935 -14987223 + AT_rich Low_complexity Low_complexity 1 21 0 485 280 132 59 chr3 203050137 203050214 -14986944 + L3 LINE CR1 270 340 -1237 2274 106 0 10 chr3 203050214 203050517 -14986641 + AluSx SINE Alu 1 300 -12 485 280 132 59 chr3 203050517 203050796 -14986362 + L3 LINE CR1 340 652 -925 1232 259 86 78 chr3 203051354 203051944 -14985214 - MLT1G1 LTR MaLR 0 595 1 219 65 32 0 chr3 203052473 203052504 -14984654 - L2 LINE L2 -40 3232 3201 2296 87 0 26 chr3 203052668 203052977 -14984181 + AluSg SINE Alu 1 301 -9 2495 147 81 0 chr3 203053317 203053713 -14983445 + MSTC LTR MaLR 1 428 0 1815 111 0 0 chr3 203053723 203053958 -14983200 - AluSq SINE Alu -78 235 1 470 237 301 11 chr3 203054568 203054754 -14982404 + MIR SINE MIR 23 262 0 625 212 9 0 chr3 203055236 203055349 -14981809 - MER81 DNA DNA 0 114 1 29 0 0 0 chr3 203055887 203055916 -14981242 + AT_rich Low_complexity Low_complexity 1 29 0 387 108 78 12 chr3 203055916 203056083 -14981075 + (TA)n Simple_repeat Simple_repeat 2 179 0 1151 154 0 0 chr3 203056086 203056261 -14980897 - AluJ SINE Alu -32 280 106 29 0 0 0 chr3 203056333 203056362 -14980796 + AT_rich Low_complexity Low_complexity 1 29 0 842 126 0 8 chr3 203056375 203056502 -14980656 - AluJ SINE Alu -176 126 1 2390 43 0 13 chr3 203056794 203057098 -14980060 - AluY SINE Alu -11 300 1 183 80 0 0 chr3 203057765 203057790 -14979368 + (A)n Simple_repeat Simple_repeat 1 25 0 222 336 47 16 chr3 203057846 203057974 -14979184 - L2 LINE L2 -5 3267 3136 903 166 13 9 chr3 203058098 203058328 -14978830 + CT-rich Low_complexity Low_complexity 1 231 0 2041 130 0 3 chr3 203058328 203058629 -14978529 - AluSq SINE Alu -9 304 5 1533 164 0 35 chr3 203058637 203058949 -14978209 - AluSg SINE Alu -9 301 1 315 0 0 0 chr3 203059463 203059498 -14977660 + (TG)n Simple_repeat Simple_repeat 2 36 0 2007 111 0 16 chr3 203060732 203061047 -14976111 + AluSq SINE Alu 1 310 -3 814 108 19 13 chr3 203061553 203061710 -14975448 + (TTCC)n Simple_repeat Simple_repeat 4 161 0 299 230 82 96 chr3 203061735 203061870 -14975288 - FLAM_A SINE Alu 0 133 1 1534 205 7 0 chr3 203061962 203062259 -14974899 - AluJb SINE Alu -13 299 1 2205 90 7 3 chr3 203062270 203062571 -14974587 - AluSx SINE Alu -9 303 2 303 229 16 0 chr3 203063098 203063159 -14973999 - MER45 DNA AcHobo -3 1578 1517 1430 133 0 0 chr3 203063161 203063372 -14973786 + AluSg/x SINE Alu 84 294 -16 391 237 97 0 chr3 203063372 203063465 -14973693 - MER45 DNA AcHobo -938 102 1 380 293 102 0 chr3 203063949 203064096 -14973062 - MIR SINE MIR -23 239 78 2128 101 10 0 chr3 203064251 203064549 -14972609 + AluSx SINE Alu 1 301 -11 610 297 42 31 chr3 203064556 203064785 -14972373 - MIR SINE MIR -12 250 20 1848 81 59 22 chr3 203064901 203065204 -14971954 + AluSq SINE Alu 1 313 0 485 296 144 53 chr3 203065825 203066180 -14970978 + L3 LINE CR1 1146 1532 -45 190 353 88 0 chr3 203066382 203066450 -14970708 + L2 LINE L2 3154 3227 -45 2644 60 0 23 chr3 203067189 203067538 -14969620 - L1PA5 LINE L1 -1 6153 5813 299 295 81 20 chr3 203067669 203067818 -14969340 + MIR SINE MIR 36 193 -69 2153 112 0 0 chr3 203068151 203068447 -14968711 - AluSx SINE Alu -16 296 1 266 204 226 43 chr3 203069067 203069160 -14967998 + L2 LINE L2 3158 3267 -5 2337 133 80 0 chr3 203069652 203069832 -14967326 + MSTB1 LTR MaLR 1 165 -267 186 43 0 0 chr3 203069832 203069855 -14967303 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 2337 133 80 0 chr3 203069855 203070074 -14967084 + MSTB1 LTR MaLR 165 432 0 321 274 64 25 chr3 203070873 203071030 -14966128 + L1ME4a LINE L1 5536 5698 -423 2121 113 0 6 chr3 203071056 203071367 -14965791 - AluSc SINE Alu 0 309 1 424 215 147 26 chr3 203071374 203071565 -14965593 + L1ME4a LINE L1 5822 6035 -86 659 156 85 43 chr3 203071565 203071706 -14965452 - FRAM SINE Alu -20 156 10 2098 113 0 0 chr3 203071724 203072017 -14965141 - AluSc SINE Alu -16 293 1 341 316 88 48 chr3 203072416 203072644 -14964514 - L3 LINE CR1 -257 1320 1084 252 284 106 71 chr3 203074237 203074378 -14962780 - MIR SINE MIR 0 262 117 186 118 0 0 chr3 203074400 203074434 -14962724 + (T)n Simple_repeat Simple_repeat 1 34 0 193 296 144 40 chr3 203074733 203074786 -14962372 - L2 LINE L2 -4 3309 3263 411 190 13 0 chr3 203074786 203074865 -14962293 - MER116 DNA Mariner 0 80 1 193 296 144 40 chr3 203074865 203074936 -14962222 - L2 LINE L2 -50 3263 3172 282 272 0 39 chr3 203075626 203075729 -14961429 + GA-rich Low_complexity Low_complexity 4 102 0 26 0 0 0 chr3 203075815 203075841 -14961317 + AT_rich Low_complexity Low_complexity 1 26 0 2112 104 0 3 chr3 203076405 203076693 -14960465 + AluSq SINE Alu 1 287 -26 1868 93 65 7 chr3 203077188 203077467 -14959691 + AluSx SINE Alu 1 295 -17 650 227 139 63 chr3 203079437 203079505 -14957653 + L1ME4a LINE L1 5591 5652 -469 2210 108 0 3 chr3 203079505 203079812 -14957346 + AluY SINE Alu 1 306 -5 650 227 139 63 chr3 203079812 203080232 -14956926 + L1ME4a LINE L1 5652 6116 -5 334 231 9 83 chr3 203081758 203081866 -14955292 - L2 LINE L2 -2 3270 3171 2205 83 7 3 chr3 203082121 203082422 -14954736 + AluSc SINE Alu 2 303 -6 2043 122 0 3 chr3 203083860 203084156 -14953002 - AluSc SINE Alu -9 300 6 380 293 102 0 chr3 203084320 203084467 -14952691 + MIR SINE MIR 78 239 -23 391 237 97 0 chr3 203084951 203085044 -14952114 + MER45 DNA AcHobo 1 102 -1479 1430 133 0 0 chr3 203085044 203085255 -14951903 - AluSg/x SINE Alu -16 296 86 2240 90 7 0 chr3 203085845 203086145 -14951013 + AluSx SINE Alu 2 303 -9 1534 205 7 0 chr3 203086156 203086453 -14950705 + AluJb SINE Alu 1 299 -13 299 230 82 96 chr3 203086545 203086680 -14950478 + FLAM_A SINE Alu 1 133 0 814 108 19 13 chr3 203086705 203086862 -14950296 + (GGAA)n Simple_repeat Simple_repeat 4 161 0 2007 111 0 16 chr3 203087368 203087683 -14949475 - AluSq SINE Alu -3 310 1 315 0 0 0 chr3 203088917 203088952 -14948206 + (CA)n Simple_repeat Simple_repeat 2 36 0 1533 164 0 35 chr3 203089467 203089779 -14947379 + AluSg SINE Alu 1 301 -9 2041 130 0 3 chr3 203089787 203090088 -14947070 + AluSq SINE Alu 5 304 -9 903 166 13 9 chr3 203090088 203090318 -14946840 + GA-rich Low_complexity Low_complexity 1 231 0 222 336 47 16 chr3 203090442 203090570 -14946588 + L2 LINE L2 3136 3267 -5 183 80 0 0 chr3 203090626 203090651 -14946507 + (T)n Simple_repeat Simple_repeat 1 25 0 2348 43 3 13 chr3 203091317 203091620 -14945538 + AluY SINE Alu 1 300 -11 842 126 0 8 chr3 203091912 203092039 -14945119 + AluJ SINE Alu 1 126 -176 29 0 0 0 chr3 203092052 203092081 -14945077 + AT_rich Low_complexity Low_complexity 1 29 0 1151 154 0 0 chr3 203092153 203092328 -14944830 + AluJ SINE Alu 106 280 -32 236 98 61 24 chr3 203092331 203092413 -14944745 + (TA)n Simple_repeat Simple_repeat 1 85 0 202 287 43 0 chr3 203092432 203092526 -14944632 + (TA)n Simple_repeat Simple_repeat 1 98 0 625 212 9 0 chr3 203093056 203093169 -14943989 + MER81 DNA DNA 1 114 0 470 237 301 11 chr3 203093651 203093837 -14943321 - MIR SINE MIR 0 262 23 1726 111 0 0 chr3 203094447 203094682 -14942476 + AluSq SINE Alu 1 235 -78 2345 146 78 0 chr3 203094692 203095089 -14942069 - MSTC LTR MaLR 0 428 1 2199 87 0 26 chr3 203095429 203095738 -14941420 - AluSg SINE Alu -9 301 1 218 65 32 0 chr3 203095902 203095933 -14941225 + L2 LINE L2 3201 3232 -40 1062 264 85 76 chr3 203096462 203097052 -14940106 + MLT1G1 LTR MaLR 1 595 0 521 289 122 66 chr3 203097610 203097889 -14939269 - L3 LINE CR1 -925 652 341 2162 106 0 10 chr3 203097889 203098192 -14938966 - AluSx SINE Alu -12 300 1 521 289 122 66 chr3 203098192 203098323 -14938835 - L3 LINE CR1 -1236 341 219 21 0 0 0 chr3 203098471 203098492 -14938666 + AT_rich Low_complexity Low_complexity 1 21 0 467 234 248 21 chr3 203098697 203098838 -14938320 - MIR SINE MIR -85 177 5 659 304 194 38 chr3 203099024 203099494 -14937664 + L3 LINE CR1 291 833 -744 1334 151 66 44 chr3 203099555 203099872 -14937286 - MER33 DNA MER1_type 0 324 1 270 111 0 0 chr3 203100515 203100551 -14936607 - MIR SINE MIR -110 152 117 2126 106 0 0 chr3 203101191 203101484 -14935674 - AluSg SINE Alu -15 295 3 229 262 0 16 chr3 203101498 203101559 -14935599 - Tigger8 DNA MER2_type -459 207 148 369 43 0 0 chr3 203103263 203103310 -14933848 + (CA)n Simple_repeat Simple_repeat 1 47 0 1232 189 43 12 chr3 203107308 203107562 -14929596 - MIR SINE MIR 0 262 1 21 36 0 0 chr3 203107571 203107599 -14929559 + AT_rich Low_complexity Low_complexity 1 28 0 359 278 86 21 chr3 203108446 203108633 -14928525 + L1ME3A LINE L1 862 1060 -5059 945 222 0 0 chr3 203108810 203108977 -14928181 - FAM SINE Alu -8 167 1 861 279 94 42 chr3 203109004 203109935 -14927223 + L1ME3A LINE L1 5070 6049 -104 192 289 0 0 chr3 203112412 203112457 -14924701 - MIR SINE MIR -210 52 8 309 26 0 0 chr3 203112506 203112544 -14924614 + (CA)n Simple_repeat Simple_repeat 2 39 0 2347 93 0 3 chr3 203114228 203114529 -14922629 + AluY SINE Alu 1 300 -11 198 254 87 87 chr3 203114747 203114885 -14922273 + MIR SINE MIR 78 215 -47 674 264 30 25 chr3 203114946 203115143 -14922015 + Charlie8 DNA MER1_type 66 263 -2154 1529 113 20 0 chr3 203115346 203115574 -14921584 + AluSg/x SINE Alu 76 307 0 493 287 180 3 chr3 203115982 203116271 -14920887 + MARNA DNA Mariner 56 395 -191 236 258 283 12 chr3 203118925 203119165 -14917993 + L2 LINE L2 2350 2654 -660 21 0 0 0 chr3 203119220 203119241 -14917917 + AT_rich Low_complexity Low_complexity 1 21 0 498 115 33 82 chr3 203119243 203119365 -14917793 + AluSq/x SINE Alu 3 118 -194 27 49 0 0 chr3 203119556 203119597 -14917561 + AT_rich Low_complexity Low_complexity 1 41 0 1222 218 73 28 chr3 203120048 203120443 -14916715 - L1MC4 LINE L1 -1 8041 7629 1321 283 47 45 chr3 203121570 203122214 -14914944 - L1MC4 LINE L1 -4 8038 7394 276 366 64 6 chr3 203123562 203123734 -14913424 - MIR SINE MIR -24 238 57 191 228 70 0 chr3 203124033 203124090 -14913068 + L2 LINE L2 2455 2515 -799 244 328 144 15 chr3 203124238 203124439 -14912719 + L2 LINE L2 2807 3033 -239 425 255 112 12 chr3 203126861 203127022 -14910136 - MIR SINE MIR -65 197 21 284 270 27 0 chr3 203127802 203127876 -14909282 + MIR3 SINE MIR 125 200 -8 626 107 80 27 chr3 203128631 203128743 -14908415 - MER53 DNA DNA -71 118 1 273 284 54 0 chr3 203128859 203128933 -14908225 - Charlie8 DNA MER1_type -2336 81 4 416 260 224 22 chr3 203128941 203129253 -14907905 - L3 LINE CR1 -176 1401 1027 2934 239 32 2 chr3 203129563 203130191 -14906967 + MER82 DNA MER2_type 1 647 -6 369 0 0 0 chr3 203130264 203130305 -14906853 + (TG)n Simple_repeat Simple_repeat 2 42 0 319 218 39 0 chr3 203130835 203130913 -14906245 - MIR SINE MIR -96 166 86 2110 184 6 55 chr3 203131017 203131505 -14905653 - L1MB8 LINE L1 0 6178 5715 952 164 0 30 chr3 203131505 203131670 -14905488 - FRAM SINE Alu -15 161 2 438 139 0 0 chr3 203131672 203131744 -14905414 - L1MB8 LINE L1 -491 5693 5622 371 288 114 16 chr3 203131800 203131984 -14905174 + MIR SINE MIR 47 248 -14 218 54 0 54 chr3 203132138 203132175 -14904983 + (GGGGA)n Simple_repeat Simple_repeat 3 37 0 3134 73 0 0 chr3 203133296 203133693 -14903465 + L1PA8 LINE L1 5771 6167 -5 1790 203 33 36 chr3 203134427 203134857 -14902301 - L1ME1 LINE L1 0 6166 5779 1812 83 4 0 chr3 203134857 203135085 -14902073 - AluSp SINE Alu -1 312 84 1790 203 33 36 chr3 203135085 203135135 -14902023 - L1ME1 LINE L1 -387 5779 5730 377 187 66 0 chr3 203135530 203135621 -14901537 + MER115 DNA AcHobo 597 693 0 2254 93 59 34 chr3 203136555 203136910 -14900248 + THE1B LTR MaLR 1 364 0 224 194 81 0 chr3 203137259 203137321 -14899837 + L2 LINE L2 3172 3238 -75 757 157 45 22 chr3 203138008 203138186 -14898972 - L1 LINE L1 -790 5356 5175 1296 262 56 3 chr3 203138225 203138565 -14898593 + LTR16C LTR ERVL 134 491 0 224 227 45 0 chr3 203138571 203138637 -14898521 - MIR SINE MIR -142 120 52 207 269 135 14 chr3 203139272 203139413 -14897745 - MIR3 SINE MIR -6 202 45 283 221 35 12 chr3 203139494 203139580 -14897578 + MIR SINE MIR 110 197 -65 468 148 49 0 chr3 203140345 203140467 -14896691 + CT-rich Low_complexity Low_complexity 2 129 0 2221 108 13 3 chr3 203140467 203140774 -14896384 - AluSg SINE Alu 0 310 1 2054 128 17 0 chr3 203140823 203141112 -14896046 + AluSx SINE Alu 1 294 -18 296 228 188 10 chr3 203141260 203141361 -14895797 - L2 LINE L2 -4 3309 3191 333 171 186 0 chr3 203141704 203141774 -14895384 - MLT1K LTR MaLR 0 588 506 293 231 9 83 chr3 203142268 203142376 -14894782 - L2 LINE L2 -2 3270 3171 2370 80 7 3 chr3 203142631 203142932 -14894226 + AluSc SINE Alu 2 303 -6 417 90 0 0 chr3 203143911 203143978 -14893180 + (CA)n Simple_repeat Simple_repeat 1 67 0 667 306 21 8 chr3 203144697 203144932 -14892226 - MIR SINE MIR -12 250 13 484 274 38 27 chr3 203144877 203145063 -14892095 + MIR SINE MIR 21 208 -54 * 2101 101 11 0 chr3 203145163 203145439 -14891719 - AluSg SINE Alu -23 287 9 240 264 123 0 chr3 203146069 203146175 -14890983 - MIR3 SINE MIR -8 200 82 213 65 0 0 chr3 203146247 203146278 -14890880 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 583 236 28 34 chr3 203146747 203146925 -14890233 - MER5B DNA MER1_type 0 178 2 275 323 32 0 chr3 203147683 203147776 -14889382 - L2 LINE L2 -8 3264 3169 940 236 91 106 chr3 203147933 203148472 -14888686 - MLT1F LTR MaLR -10 532 2 2061 144 0 10 chr3 203148535 203148840 -14888318 + AluSx SINE Alu 1 302 -10 432 259 95 7 chr3 203149420 203149567 -14887591 - MER5A DNA MER1_type -28 161 2 2235 119 35 167 chr3 203149580 203150101 -14887057 + LTR32 LTR ERVL 20 471 0 472 296 87 6 chr3 203150568 203150740 -14886418 + MIR SINE MIR 1 186 -76 279 285 167 38 chr3 203150892 203151264 -14885894 - L1MC5 LINE L1 -63 7898 7479 712 183 37 24 chr3 203151472 203151636 -14885522 + MER5B DNA MER1_type 1 166 -12 371 229 123 47 chr3 203151796 203151966 -14885192 - L1MC5 LINE L1 -746 7215 7033 220 300 100 73 chr3 203152417 203152637 -14884521 + L2 LINE L2 2939 3164 -108 810 293 109 17 chr3 203152808 203153361 -14883797 + L2 LINE L2 2698 3312 -1 224 352 48 0 chr3 203153817 203153922 -14883236 + MIR SINE MIR 5 114 -148 413 230 111 0 chr3 203154019 203154095 -14883063 + MIR SINE MIR 123 189 -73 248 0 31 0 chr3 203154095 203154127 -14883031 + (TAGA)n Simple_repeat Simple_repeat 4 36 0 413 230 111 0 chr3 203154127 203154176 -14882982 + MIR SINE MIR 189 262 0 193 287 25 57 chr3 203155198 203155320 -14881838 + MIR3 SINE MIR 90 207 -1 638 271 171 10 chr3 203155739 203155938 -14881220 + MIR SINE MIR 20 250 -12 248 287 139 17 chr3 203156057 203156172 -14880986 + L2 LINE L2 3182 3310 -3 242 281 138 37 chr3 203156787 203156965 -14880193 - MIR SINE MIR -62 146 10 308 333 28 0 chr3 203156970 203157078 -14880080 - L3 LINE CR1 -47 1530 1420 466 314 83 6 chr3 203157239 203157408 -14879750 - MIR SINE MIR -75 187 6 2412 53 0 10 chr3 203157466 203157767 -14879391 + AluY SINE Alu 1 298 -13 359 308 45 19 chr3 203157769 203157925 -14879233 - L3 LINE CR1 -200 1377 1218 223 217 200 26 chr3 203158024 203158139 -14879019 - L3 LINE CR1 -593 984 850 231 250 0 0 chr3 203158881 203158929 -14878229 - MLT1K LTR MaLR -325 263 216 2206 92 0 13 chr3 203159093 203159398 -14877760 - AluSx SINE Alu -11 301 1 351 0 0 0 chr3 203159448 203159487 -14877671 + (CA)n Simple_repeat Simple_repeat 2 40 0 2250 90 3 0 chr3 203160210 203160510 -14876648 + AluSg SINE Alu 1 301 -9 464 289 89 18 chr3 203161012 203161237 -14875921 - L3 LINE CR1 -218 1359 1119 3878 166 5 8 chr3 203161553 203162190 -14874968 + MER41B LTR ERV1 1 635 0 554 232 116 49 chr3 203162916 203163140 -14874018 - MIR SINE MIR -15 247 9 306 302 164 31 chr3 203163608 203163767 -14873391 - MIR3 SINE MIR -9 199 20 194 313 16 0 chr3 203163814 203163878 -14873280 + MER5B DNA MER1_type 90 154 -24 13124 147 14 4 chr3 203163880 203165306 -14871852 + L1PA14 LINE L1 3011 4421 -1740 2175 120 10 0 chr3 203165306 203165615 -14871543 + AluSx SINE Alu 1 312 0 13124 147 14 4 chr3 203165615 203167110 -14870048 + L1PA14 LINE L1 4421 5962 -199 3088 173 25 71 chr3 203167092 203167785 -14869373 - L1M3e LINE L1 -6368 662 2 * 765 261 38 31 chr3 203168898 203169159 -14867999 - MER102b DNA MER1_type -17 324 62 1969 134 0 3 chr3 203169262 203169567 -14867591 - AluJb SINE Alu -8 304 1 1513 106 4 34 chr3 203170527 203170763 -14866395 - AluSq SINE Alu -9 304 76 2406 82 10 0 chr3 203271651 203271943 -14765215 + AluSg SINE Alu 1 295 -15 1093 260 102 60 chr3 203272096 203272222 -14764936 + L1MC4a LINE L1 5371 5490 -2318 2007 159 3 0 chr3 203272222 203272523 -14764635 + AluJb SINE Alu 1 302 -10 1093 260 102 60 chr3 203272523 203272768 -14764390 + L1MC4a LINE L1 5490 5723 -2085 2341 77 0 26 chr3 203272768 203273103 -14764055 + AluY SINE Alu 1 327 0 1093 260 102 60 chr3 203273103 203273293 -14763865 + L1MC4a LINE L1 5723 5960 -1848 1181 131 4 102 chr3 203273386 203273440 -14763718 - MLT1B LTR MaLR -5 385 327 8637 43 2 0 chr3 203273440 203274407 -14762751 + LTR5 LTR ERVK 1 969 0 1181 131 4 102 chr3 203274407 203274596 -14762562 - MLT1B LTR MaLR -63 327 166 2042 122 0 3 chr3 203274597 203274883 -14762275 - AluSx SINE Alu -14 298 14 2307 96 7 0 chr3 203275110 203275402 -14761756 - AluSq SINE Alu -19 294 1 1597 129 50 0 chr3 203275437 203275678 -14761480 + MER9 LTR ERVK 1 253 -258 468 269 159 48 chr3 203276011 203276383 -14760775 + LTR16A LTR ERVL 14 426 -24 230 368 30 6 chr3 203276699 203276865 -14760293 + L2 LINE L2 2686 2855 -459 258 169 0 31 chr3 203277277 203277342 -14759816 + HERVS71 LTR ERV1 8911 8973 -5 2274 182 36 70 chr3 203277342 203277924 -14759234 + LTR6A LTR ERV1 3 564 0 2355 89 0 10 chr3 203278186 203278489 -14758669 - AluSc SINE Alu -9 300 1 929 110 16 0 chr3 203278834 203278961 -14758197 + AluSx SINE Alu 1 129 -183 243 171 40 0 chr3 203278963 203279039 -14758119 + (TA)n Simple_repeat Simple_repeat 1 79 0 1075 138 54 0 chr3 203279046 203279213 -14757945 + AluSx SINE Alu 127 302 -10 305 347 107 20 chr3 203279339 203279731 -14757427 + L2 LINE L2 1962 2387 -927 1543 167 20 52 chr3 203279831 203280136 -14757022 - AluJo SINE Alu -17 295 1 570 218 35 0 chr3 203280157 203280299 -14756859 - Charlie1 DNA MER1_type -1 2760 2614 38 0 0 0 chr3 203280810 203280848 -14756310 + AT_rich Low_complexity Low_complexity 1 38 0 4047 176 36 125 chr3 203280899 203281457 -14755701 - Charlie1 DNA MER1_type -171 2590 1984 1781 204 46 32 chr3 203281457 203281918 -14755240 - MLT1C LTR MaLR 0 467 1 4047 176 36 125 chr3 203281918 203282402 -14754756 - Charlie1 DNA MER1_type -777 1984 1459 1758 176 0 17 chr3 203282402 203282697 -14754461 + AluJb SINE Alu 5 294 -18 4047 176 36 125 chr3 203282697 203283009 -14754149 - Charlie1 DNA MER1_type -1302 1459 45 283 309 79 12 chr3 203283097 203283262 -14753896 + L2 LINE L2 2612 2787 -527 276 298 99 25 chr3 203283320 203283481 -14753677 + L2 LINE L2 2871 3043 -229 1151 154 0 11 chr3 203283575 203283757 -14753401 - AluSx SINE Alu -12 300 121 33546 97 13 62 chr3 203283761 203290223 -14746935 - L1PA7 LINE L1 -10 6144 12 1036 98 0 0 chr3 203290236 203290369 -14746789 - AluSx SINE Alu -180 133 1 186 237 119 0 chr3 203290426 203290485 -14746673 - MIR SINE MIR -1 261 196 2210 116 3 7 chr3 203290579 203290904 -14746254 - AluSp SINE Alu 0 313 1 2092 133 7 0 chr3 203290906 203291200 -14745958 - AluSx SINE Alu -16 296 1 255 230 94 41 chr3 203291344 203291539 -14745619 - HAL1b LINE L1 -42 1306 1040 1862 141 30 7 chr3 203291539 203291837 -14745321 + AluSg SINE Alu 3 307 -3 255 230 94 41 chr3 203291837 203291882 -14745276 - HAL1b LINE L1 -308 1040 999 1066 91 0 0 chr3 203292006 203292138 -14745020 + AluY SINE Alu 1 132 -179 1667 43 0 0 chr3 203292244 203292432 -14744726 - AluY SINE Alu -123 188 1 315 382 65 40 chr3 203292456 203292778 -14744380 - HAL1b LINE L1 -938 410 81 2749 13 0 13 chr3 203293246 203293552 -14743606 + AluYa5 SINE Alu 2 303 -8 356 205 26 103 chr3 203294085 203294202 -14742956 - L1ME LINE L1 -4734 1650 1543 688 27 45 18 chr3 203294204 203294315 -14742843 + (TTTC)n Simple_repeat Simple_repeat 3 116 0 1843 267 100 46 chr3 203294317 203294361 -14742797 - L1ME LINE L1 -4719 1663 1623 2181 123 13 0 chr3 203294361 203294661 -14742497 - AluSx SINE Alu -8 304 1 1843 267 100 46 chr3 203294661 203295947 -14741211 - L1ME LINE L1 -4759 1623 306 201 294 63 28 chr3 203296059 203296202 -14740956 + MIR SINE MIR 90 237 -25 202 276 17 0 chr3 203296237 203296295 -14740863 + L2 LINE L2 3214 3272 0 293 167 0 0 chr3 203297011 203297065 -14740093 + L1MB4 LINE L1 6127 6180 0 306 264 138 30 chr3 203297163 203297459 -14739699 - L1ME4a LINE L1 -122 5999 5672 205 371 0 21 chr3 203297475 203297572 -14739586 + L2 LINE L2 2959 3053 -219 366 310 182 0 chr3 203297733 203297920 -14739238 - MIR SINE MIR -16 246 26 2427 90 0 0 chr3 203298587 203298888 -14738270 - AluSx SINE Alu -9 303 3 2429 86 0 10 chr3 203299385 203299698 -14737460 - AluSg SINE Alu 0 310 1 2253 85 3 0 chr3 203300012 203300338 -14736820 + AluSp SINE Alu 1 327 0 368 286 95 12 chr3 203300624 203300792 -14736366 + MIR SINE MIR 8 189 -73 433 257 18 9 chr3 203301321 203301430 -14735728 + MIR SINE MIR 37 146 -62 319 292 56 25 chr3 203303336 203303497 -14733661 + MER5B DNA MER1_type 12 177 -1 248 318 40 16 chr3 203303497 203303622 -14733536 - MIR3 SINE MIR -47 161 34 2358 84 7 0 chr3 203303826 203304123 -14733035 + AluSx SINE Alu 5 303 -9 678 226 0 0 chr3 203304134 203304267 -14732891 + FLAM_C SINE Alu 1 133 0 1102 83 14 7 chr3 203304282 203304427 -14732731 - AluSq SINE Alu -151 162 17 263 254 0 0 chr3 203304431 203304494 -14732664 + L1ME LINE L1 5732 5794 -2014 819 225 87 17 chr3 203304495 203304566 -14732592 - MIR SINE MIR -2 260 195 2197 115 0 7 chr3 203304566 203304862 -14732296 - AluSx SINE Alu -18 294 1 819 225 87 17 chr3 203304862 203305021 -14732137 - MIR SINE MIR -67 195 14 242 195 65 52 chr3 203305139 203305216 -14731942 + L1ME LINE L1 5845 5922 -199 942 189 40 0 chr3 203306215 203306390 -14730768 - MSTC LTR MaLR -51 377 196 495 0 0 0 chr3 203306428 203306483 -14730675 + (TA)n Simple_repeat Simple_repeat 1 55 0 1874 188 5 37 chr3 203306901 203307120 -14730038 - MLT1A1 LTR MaLR 0 365 161 2153 125 0 13 chr3 203307120 203307449 -14729709 - AluSq SINE Alu 0 313 1 1874 188 5 37 chr3 203307449 203307606 -14729552 - MLT1A1 LTR MaLR -204 161 1 1974 70 4 23 chr3 203308076 203308333 -14728825 - AluY SINE Alu -59 252 1 1057 106 0 14 chr3 203308333 203308475 -14728683 - AluY SINE Alu -171 140 1 196 280 0 0 chr3 203308585 203308635 -14728523 + MIR SINE MIR 118 167 -95 1786 123 70 64 chr3 203308676 203309049 -14728109 - THE1C LTR MaLR 0 375 1 333 328 133 17 chr3 203309092 203309272 -14727886 + L2 LINE L2 2555 2755 -559 444 310 107 11 chr3 203309391 203309578 -14727580 - MIR SINE MIR -20 242 38 187 189 27 0 chr3 203309970 203310007 -14727151 + L3 LINE CR1 1515 1552 -25 269 292 0 22 chr3 203310324 203310413 -14726745 - MIR SINE MIR -116 146 60 21 0 0 0 chr3 203311078 203311099 -14726059 + GC_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 203311145 203311167 -14725991 + GC_rich Low_complexity Low_complexity 1 22 0 370 271 52 39 chr3 203312410 203312565 -14724593 - MIR3 SINE MIR -28 180 24 2739 161 20 11 chr3 203313187 203313719 -14723439 + LTR27 LTR ERV1 7 1252 -141 428 309 9 0 chr3 203313832 203313942 -14723216 - MIR3 SINE MIR -27 181 71 230 220 20 0 chr3 203314314 203314364 -14722794 + MIR SINE MIR 97 147 -61 1831 135 3 75 chr3 203314480 203314814 -14722344 + AluJb SINE Alu 1 310 -2 1786 48 5 0 chr3 203314972 203315216 -14721942 - AluY SINE Alu 0 319 75 4682 117 18 11 chr3 203315226 203315935 -14721223 - L1PA13 LINE L1 -2 6161 5448 465 204 138 48 chr3 203316855 203316884 -14720274 - L1ME4a LINE L1 -2 6119 6094 2283 123 7 3 chr3 203316884 203317194 -14719964 + AluSx SINE Alu 1 311 -1 465 204 138 48 chr3 203317194 203317395 -14719763 - L1ME4a LINE L1 -27 6094 5868 192 294 101 59 chr3 203317619 203317738 -14719420 + MIR SINE MIR 22 145 -63 2058 110 7 3 chr3 203318016 203318298 -14718860 + AluSx SINE Alu 1 283 -29 219 69 0 0 chr3 203318298 203318327 -14718831 + (AAATG)n Simple_repeat Simple_repeat 2 30 0 347 237 34 59 chr3 203318337 203318455 -14718703 - L1ME4a LINE L1 -437 5684 5570 690 316 28 5 chr3 203318517 203318729 -14718429 + MIR SINE MIR 46 262 0 363 287 122 11 chr3 203318917 203319105 -14718053 - L1MC5 LINE L1 -28 7933 7725 2098 112 20 16 chr3 203319294 203319598 -14717560 - AluJb SINE Alu -7 305 1 225 366 9 36 chr3 203319661 203319773 -14717385 + MIR3 SINE MIR 11 119 -89 1539 107 31 5 chr3 203320711 203320935 -14716223 - MER30 DNA MER1_type 0 230 1 298 285 104 0 chr3 203320959 203321103 -14716055 - L1MC4a LINE L1 -1921 5887 5729 724 309 107 55 chr3 203321535 203321956 -14715202 + L3 LINE CR1 1026 1481 -96 2440 74 0 0 chr3 203321956 203322252 -14714906 + AluY SINE Alu 1 296 -15 724 309 107 55 chr3 203322252 203322354 -14714804 + L3 LINE CR1 1481 1576 -1 384 344 38 6 chr3 203322908 203323065 -14714093 - MIR SINE MIR -12 250 89 1191 124 0 0 chr3 203323065 203323226 -14713932 - AluSq SINE Alu -150 163 3 303 364 83 39 chr3 203323267 203323605 -14713553 - L2 LINE L2 -89 3183 2831 426 304 31 52 chr3 203323609 203323666 -14713492 - MIR SINE MIR -57 205 148 2417 91 7 0 chr3 203323666 203323973 -14713185 - AluSg SINE Alu -1 309 1 426 304 31 52 chr3 203323973 203324109 -14713049 - MIR SINE MIR -114 148 16 496 207 69 85 chr3 203325025 203325213 -14711945 - MLT1J LTR MaLR -322 189 5 1672 164 45 10 chr3 203325262 203325554 -14711604 + AluJo SINE Alu 1 302 -10 519 275 167 23 chr3 203325555 203325908 -14711250 + HAL1b LINE L1 462 865 -483 2450 72 7 16 chr3 203325930 203326237 -14710921 + AluY SINE Alu 1 304 -7 2095 95 20 24 chr3 203326250 203326544 -14710614 + AluSx SINE Alu 1 293 -19 28 61 0 0 chr3 203326557 203326606 -14710552 + AT_rich Low_complexity Low_complexity 1 49 0 833 210 12 0 chr3 203326607 203326769 -14710389 - AluJb SINE Alu -12 300 137 314 319 102 18 chr3 203326820 203326986 -14710172 + HAL1b LINE L1 1164 1343 -5 259 211 53 0 chr3 203327426 203327483 -14709675 - MIR SINE MIR -85 177 118 322 175 0 0 chr3 203327500 203327557 -14709601 + U6 snRNA snRNA 1 57 -50 345 289 70 32 chr3 203327885 203328041 -14709117 + MIR SINE MIR 59 220 -42 459 35 0 0 chr3 203328754 203328811 -14708347 + (TG)n Simple_repeat Simple_repeat 1 57 0 482 301 116 5 chr3 203329943 203330159 -14706999 + MIR SINE MIR 20 259 -3 298 297 99 0 chr3 203330192 203330303 -14706855 - L2 LINE L2 -18 3254 3133 244 203 109 0 chr3 203331132 203331196 -14705962 - MIR SINE MIR -12 250 180 * 1022 281 44 28 chr3 203331190 203331290 -14705868 + L2 LINE L2 1117 1214 -2100 1865 123 62 17 chr3 203331290 203331582 -14705576 - AluSq SINE Alu -8 305 1 1022 281 44 28 chr3 203331582 203331650 -14705508 + L2 LINE L2 1214 1279 -2035 331 316 35 29 chr3 203331650 203331824 -14705334 + MER5B DNA MER1_type 1 175 -3 1022 281 44 28 chr3 203331824 203331971 -14705187 + L2 LINE L2 1279 1438 -1876 1208 223 4 0 chr3 203331976 203332209 -14704949 - MLT1A1 LTR MaLR 0 365 132 985 144 33 6 chr3 203332210 203332390 -14704768 - MSTB1 LTR MaLR 0 432 248 2579 277 91 81 chr3 203332401 203332712 -14704446 + L2 LINE L2 1776 2082 -1231 824 78 0 0 chr3 203332712 203332842 -14704316 - AluSg/x SINE Alu 0 315 186 2579 277 91 81 chr3 203332842 203333953 -14703205 + L2 LINE L2 2082 3309 -4 298 260 19 143 chr3 203333960 203334044 -14703114 - MIR SINE MIR -77 185 127 6788 75 5 13 chr3 203334044 203335720 -14701438 - L1PA10 LINE L1 0 6168 4498 2370 101 0 7 chr3 203335720 203336026 -14701132 - AluSc SINE Alu -5 304 1 6788 75 5 13 chr3 203336026 203336209 -14700949 - L1PA10 LINE L1 -1670 4498 4315 298 260 19 143 chr3 203336209 203336278 -14700880 - MIR SINE MIR -135 127 51 468 184 128 9 chr3 203336458 203336567 -14700591 + MER46C DNA MER2_type 8 129 -209 2450 274 86 29 chr3 203336729 203337387 -14699771 + HAL1 LINE L1 536 1290 -1217 1911 159 3 29 chr3 203337387 203337702 -14699456 + AluJb SINE Alu 2 308 -4 2450 274 86 29 chr3 203337702 203338198 -14698960 + HAL1 LINE L1 1290 1756 -751 1093 240 63 96 chr3 203338205 203338884 -14698274 + HAL1 LINE L1 1846 2502 -5 2224 100 0 13 chr3 203338896 203339239 -14697919 + AluSx SINE Alu 2 312 0 406 212 191 37 chr3 203339556 203339745 -14697413 + MIR SINE MIR 31 248 -14 28 29 0 0 chr3 203340990 203341025 -14696133 + AT_rich Low_complexity Low_complexity 1 35 0 2112 121 7 26 chr3 203341195 203341501 -14695657 - AluSx SINE Alu -12 300 1 348 264 36 129 chr3 203342758 203343144 -14694014 + L1ME4a LINE L1 5501 5850 -271 313 280 136 0 chr3 203343193 203343318 -14693840 + L1ME4a LINE L1 5964 6105 -16 1211 44 0 0 chr3 203343458 203343595 -14693563 - AluSp/q SINE Alu -21 292 156 195 42 0 0 chr3 203344500 203344524 -14692634 + (CA)n Simple_repeat Simple_repeat 2 25 0 392 241 0 0 chr3 203344924 203345003 -14692155 - MER63 DNA MER1_type -314 748 44 278 246 64 64 chr3 203345744 203345854 -14691304 - MIR3 SINE MIR 0 208 99 2215 107 3 7 chr3 203346125 203346425 -14690733 - AluSx SINE Alu -13 299 1 405 284 116 16 chr3 203346492 203346682 -14690476 - MIR SINE MIR -14 248 40 191 289 70 35 chr3 203346910 203347024 -14690134 - MIR3 SINE MIR -22 186 69 223 159 0 23 chr3 203347139 203347183 -14689975 - L2 LINE L2 -1 3312 3270 2265 121 0 0 chr3 203347410 203347717 -14689441 - AluSx SINE Alu -5 307 1 185 295 63 32 chr3 203347916 203348011 -14689147 - MIR3 SINE MIR -7 201 104 298 295 239 0 chr3 203348365 203348566 -14688592 + MIR SINE MIR 15 260 -2 2688 211 54 53 chr3 203348584 203349266 -14687892 - L1ME1 LINE L1 -6 6160 5473 2363 103 0 3 chr3 203349266 203349578 -14687580 - AluSx SINE Alu -1 311 1 2688 211 54 53 chr3 203349578 203349851 -14687307 - L1ME1 LINE L1 -693 5473 5202 295 344 80 12 chr3 203349916 203350079 -14687079 - L2 LINE L2 -181 3091 2918 202 217 101 43 chr3 203350115 203350184 -14686974 + MIR SINE MIR 15 87 -175 2664 231 98 32 chr3 203350187 203350430 -14686728 - L1MD2 LINE L1 0 6359 6133 2212 114 0 29 chr3 203350430 203350746 -14686412 - AluY SINE Alu -2 309 3 2664 231 98 32 chr3 203350746 203351322 -14685836 - L1MD2 LINE L1 -226 6133 5474 2087 104 0 30 chr3 203351322 203351619 -14685539 - AluSq SINE Alu -21 292 5 2664 231 98 32 chr3 203351619 203351693 -14685465 - L1MD2 LINE L1 -885 5474 5406 824 226 173 0 chr3 203352248 203352456 -14684702 - MIR SINE MIR -16 246 3 2122 129 0 10 chr3 203352465 203352775 -14684383 - AluSx SINE Alu -5 307 1 241 244 0 77 chr3 203352861 203352939 -14684219 + L2 LINE L2 3201 3272 0 2376 113 0 0 chr3 203353252 203353561 -14683597 - AluSq SINE Alu -4 309 1 273 264 42 0 chr3 203353825 203353897 -14683261 + MIR SINE MIR 116 190 -72 279 302 49 121 chr3 203354058 203354323 -14682835 - L2 LINE L2 0 3272 3027 547 229 14 21 chr3 203354679 203354819 -14682339 - L1MB7 LINE L1 -2 6182 6044 256 294 54 11 chr3 203356317 203356409 -14680749 - MIR3 SINE MIR -43 165 70 298 343 33 6 chr3 203356588 203356645 -14680513 - MIR SINE MIR -12 250 196 2176 148 0 0 chr3 203356645 203356955 -14680203 - AluSx SINE Alu -2 310 1 298 343 33 6 chr3 203356955 203357078 -14680080 - MIR SINE MIR -66 196 62 308 255 85 0 chr3 203357102 203357196 -14679962 - L2 LINE L2 0 3313 3212 491 252 35 88 chr3 203358026 203358157 -14679001 - MIR SINE MIR -10 252 135 2518 78 10 0 chr3 203358157 203358465 -14678693 + AluSx SINE Alu 1 311 -1 491 252 35 88 chr3 203358465 203358587 -14678571 - MIR SINE MIR -127 135 8 316 296 133 22 chr3 203359008 203359234 -14677924 + L2 LINE L2 2839 3089 -183 631 268 18 0 chr3 203360145 203360309 -14676849 - MIR SINE MIR -16 246 80 295 340 32 3 chr3 203360365 203360538 -14676620 - MER5A DNA MER1_type 0 178 2 1823 89 26 60 chr3 203360707 203361009 -14676149 + AluSc SINE Alu 5 296 -13 249 273 124 50 chr3 203361009 203361130 -14676028 + L3 LINE CR1 1333 1462 -115 1120 206 113 29 chr3 203361316 203361660 -14675498 - MER93b LTR ERV1 0 373 1 380 252 98 79 chr3 203362170 203362384 -14674774 - MIR SINE MIR -44 218 1 2146 93 0 0 chr3 203362917 203363207 -14673951 - AluSq SINE Alu -23 290 1 315 284 0 37 chr3 203363391 203363472 -14673686 - L2 LINE L2 -1 3271 3194 416 293 187 15 chr3 203363857 203364055 -14673103 - MIR SINE MIR -1 261 30 1610 269 95 67 chr3 203364120 203364936 -14672222 + L2 LINE L2 2221 3013 -300 1129 94 0 11 chr3 203364936 203365116 -14672042 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 2064 141 0 0 chr3 203365122 203365434 -14671724 - AluSx SINE Alu 0 312 1 1610 269 95 67 chr3 203365434 203365668 -14671490 + L2 LINE L2 3017 3311 -2 1606 147 7 38 chr3 203365737 203366030 -14671128 + AluJb SINE Alu 29 312 0 234 0 0 0 chr3 203366682 203366708 -14670450 + (CCA)n Simple_repeat Simple_repeat 3 28 0 560 176 14 27 chr3 203367351 203367499 -14669659 + GA-rich Low_complexity Low_complexity 3 148 0 202 216 59 0 chr3 203367600 203367651 -14669507 - MIR SINE MIR -155 107 54 198 327 18 0 chr3 203367733 203367788 -14669370 + L2 LINE L2 3246 3301 -12 769 338 128 59 chr3 203368429 203368864 -14668294 + L3 LINE CR1 470 873 -704 1740 132 0 28 chr3 203368864 203369153 -14668005 + AluJb SINE Alu 10 290 -22 231 61 0 0 chr3 203369153 203369186 -14667972 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 769 338 128 59 chr3 203369186 203369769 -14667389 + L3 LINE CR1 872 1560 -17 336 237 79 0 chr3 203370197 203370273 -14666885 + MIR SINE MIR 25 106 -156 1969 118 0 0 chr3 203370279 203370559 -14666599 - AluSx SINE Alu -32 280 1 845 103 0 0 chr3 203370940 203371057 -14666101 + AluSp/q SINE Alu 185 301 -12 257 314 68 85 chr3 203371456 203371692 -14665466 - L2 LINE L2 0 3272 3041 1980 114 94 26 chr3 203372345 203372696 -14664462 + THE1C LTR MaLR 1 375 0 207 0 0 0 chr3 203372710 203372733 -14664425 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2124 99 3 10 chr3 203372737 203373039 -14664119 + AluSx SINE Alu 1 300 -12 195 296 0 0 chr3 203373070 203373114 -14664044 - L2 LINE L2 -78 3194 3151 441 0 0 0 chr3 203373782 203373831 -14663327 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 409 318 18 0 chr3 203373898 203374033 -14663125 + MIR SINE MIR 2 144 -64 192 182 0 0 chr3 203374108 203374152 -14663006 + (TAA)n Simple_repeat Simple_repeat 3 46 0 328 158 19 163 chr3 203374840 203374900 -14662258 - L1MC5 LINE L1 -212 7749 7682 1840 109 53 11 chr3 203374900 203375184 -14661974 + AluSg SINE Alu 1 296 -14 328 158 19 163 chr3 203375184 203375338 -14661820 - L1MC5 LINE L1 -279 7682 7566 2148 107 3 3 chr3 203375452 203375761 -14661397 + AluSc SINE Alu 1 309 0 2027 122 0 0 chr3 203375795 203376082 -14661076 + AluSx SINE Alu 9 295 -17 451 310 31 8 chr3 203377497 203377626 -14659532 - MIR SINE MIR -58 150 19 1661 170 24 3 chr3 203377705 203377999 -14659159 + AluJb SINE Alu 2 301 -11 279 168 11 137 chr3 203378095 203378190 -14658968 - MER33 DNA MER1_type 0 363 281 780 101 73 0 chr3 203378191 203378300 -14658858 + AluJb SINE Alu 2 118 -194 26 30 0 0 chr3 203378303 203378336 -14658822 + AT_rich Low_complexity Low_complexity 1 33 0 311 297 0 0 chr3 203378379 203378443 -14658715 - Tigger2 DNA MER2_type -12 2706 2643 2218 127 62 5 chr3 203378474 203378845 -14658313 - Tigger2 DNA MER2_type -54 2664 2273 708 182 166 5 chr3 203378886 203379073 -14658085 - MER33 DNA MER1_type -107 217 1 451 291 61 7 chr3 203379073 203379221 -14657937 - MIR SINE MIR -46 216 61 2178 92 7 0 chr3 203379639 203379934 -14657224 - AluY SINE Alu -14 297 1 1316 202 75 7 chr3 203380071 203380353 -14656805 - AluJo SINE Alu -1 301 1 2026 96 3 43 chr3 203380493 203380796 -14656362 + AluSq SINE Alu 1 291 -22 757 222 30 0 chr3 203381526 203381693 -14655465 + MIR SINE MIR 82 253 -9 433 280 124 21 chr3 203381697 203381883 -14655275 + MIR SINE MIR 47 251 -11 2473 61 0 10 chr3 203381901 203382214 -14654944 + AluSg SINE Alu 1 310 0 970 263 62 53 chr3 203383160 203383686 -14653472 - MLT2B3 LTR ERVL -37 486 2 694 211 47 11 chr3 203383687 203383877 -14653281 - L1M4 LINE L1 -1572 4574 4378 238 269 50 56 chr3 203384118 203384160 -14652998 - MIR SINE MIR -69 139 98 2330 158 75 0 chr3 203384160 203384558 -14652600 + MSTA LTR MaLR 1 428 0 238 269 50 56 chr3 203384558 203384628 -14652530 - MIR SINE MIR -110 98 40 241 304 9 24 chr3 203384832 203384939 -14652219 - MER91A DNA MER1_type -8 188 3 223 250 28 14 chr3 203385079 203385151 -14652007 + CT-rich Low_complexity Low_complexity 2 74 0 237 182 0 55 chr3 203385229 203385284 -14651874 + MER112 DNA MER1_type 7 58 -202 511 243 59 18 chr3 203385298 203385467 -14651691 + L1MC5 LINE L1 7702 7877 -84 2383 52 3 7 chr3 203385489 203385799 -14651359 - AluY SINE Alu -1 310 2 459 262 58 17 chr3 203385822 203385994 -14651164 + MER112 DNA MER1_type 81 259 -1 370 321 70 19 chr3 203386237 203386452 -14650706 - L2 LINE L2 -423 2891 2666 1056 217 68 0 chr3 203386748 203386969 -14650189 - MIR SINE MIR -16 246 11 246 143 0 100 chr3 203387454 203387524 -14649634 + L1ME LINE L1 315 377 -5693 1416 239 75 104 chr3 203387670 203387782 -14649376 + L1ME LINE L1 451 565 -5515 189 0 0 0 chr3 203387782 203387803 -14649355 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1416 239 75 104 chr3 203387803 203388938 -14648220 + L1ME LINE L1 565 1628 -4452 225 263 177 20 chr3 203389097 203389295 -14647863 - L1ME LINE L1 -322 5799 5571 207 232 0 0 chr3 203389298 203389354 -14647804 + CT-rich Low_complexity Low_complexity 3 58 0 321 287 56 37 chr3 203389362 203389470 -14647688 - L1ME4a LINE L1 -199 5922 5813 679 210 85 5 chr3 203389506 203389706 -14647452 + L1MC5 LINE L1 7709 7924 -37 938 161 0 0 chr3 203389708 203389863 -14647295 + FRAM SINE Alu 1 152 -24 2123 95 0 3 chr3 203389949 203390243 -14646915 + AluSg SINE Alu 1 293 -17 238 293 181 4 chr3 203390371 203390620 -14646538 - L1ME4a LINE L1 -438 5683 5391 228 104 229 0 chr3 203390692 203390740 -14646418 - AluSp/q SINE Alu -6 297 239 4805 31 2 2 chr3 203390741 203391297 -14645861 + LTR6B LTR ERV1 1 556 -2 1646 111 0 0 chr3 203391297 203391522 -14645636 - AluSx SINE Alu -85 227 3 261 298 106 0 chr3 203391580 203391674 -14645484 + MIR SINE MIR 37 140 -122 361 56 0 0 chr3 203391924 203391978 -14645180 + LTR6B LTR ERV1 330 383 -175 2100 118 7 0 chr3 203392473 203392779 -14644379 - AluSg SINE Alu -2 308 1 489 273 45 26 chr3 203393488 203393698 -14643460 - MIR SINE MIR -40 222 11 2128 114 0 0 chr3 203393804 203394110 -14643048 - AluSx SINE Alu -6 306 1 689 263 101 14 chr3 203394305 203394514 -14642644 - MIR SINE MIR -12 250 24 199 321 0 0 chr3 203394906 203394959 -14642199 + MIR SINE MIR 91 143 -65 1742 159 3 7 chr3 203395783 203396091 -14641067 + AluJb SINE Alu 3 309 -3 641 282 79 15 chr3 203396091 203396293 -14640865 + MIR SINE MIR 22 236 -26 338 279 10 19 chr3 203397548 203397652 -14639506 + MER5B DNA MER1_type 76 178 0 3548 72 2 11 chr3 203398562 203399019 -14638139 - MLT2A2 LTR ERVL 0 453 1 279 246 14 14 chr3 203399634 203399703 -14637455 - MLT1I LTR MaLR -249 160 92 2131 86 4 0 chr3 203400242 203400548 -14636610 + AluSg1 SINE Alu 1 307 0 448 293 50 7 chr3 203400557 203400697 -14636461 + MIR SINE MIR 63 208 -54 237 250 339 16 chr3 203400708 203400832 -14636326 + L2 LINE L2 2662 2825 -489 278 250 0 0 chr3 203400841 203400905 -14636253 + L2 LINE L2 2943 3006 -307 959 236 8 40 chr3 203400905 203401155 -14636003 - MER4D LTR ERV1 0 903 662 2220 91 3 0 chr3 203401187 203401485 -14635673 - AluSg SINE Alu -9 301 3 941 192 65 49 chr3 203401487 203401683 -14635475 + MER21A LTR ERV1 16 218 -713 2364 82 0 3 chr3 203401683 203401987 -14635171 + AluSx SINE Alu 1 303 -9 941 192 65 49 chr3 203401987 203402035 -14635123 + MER21A LTR ERV1 218 264 -667 2982 141 69 30 chr3 203402037 203402576 -14634582 + MER21A LTR ERV1 372 931 0 1824 185 40 75 chr3 203402611 203403126 -14634032 - MER4D LTR ERV1 -225 666 62 1582 150 32 14 chr3 203403118 203403398 -14633760 - MER49 LTR ERV1 -638 285 1 * 696 276 89 31 chr3 203403398 203403691 -14633467 + L2 LINE L2 3003 3312 -1 3584 30 5 5 chr3 203403698 203404125 -14633033 + L1PA4 LINE L1 5729 6155 0 270 173 25 12 chr3 203404270 203404315 -14632843 + (TA)n Simple_repeat Simple_repeat 1 49 -33 2086 99 7 3 chr3 203404315 203404618 -14632540 - AluY SINE Alu -7 304 1 270 173 25 12 chr3 203404618 203404653 -14632505 + (TA)n Simple_repeat Simple_repeat 49 82 0 366 214 119 0 chr3 203404653 203404719 -14632439 + L1MC4 LINE L1 6612 6691 -1351 270 0 0 0 chr3 203404719 203404749 -14632409 + (GA)n Simple_repeat Simple_repeat 2 31 0 366 214 119 0 chr3 203404749 203404766 -14632392 + L1MC4 LINE L1 6691 6705 -1337 584 271 30 69 chr3 203404809 203405170 -14631988 + L1MC5 LINE L1 7317 7663 -298 396 40 0 0 chr3 203405210 203405260 -14631898 + (TG)n Simple_repeat Simple_repeat 2 51 0 489 210 6 96 chr3 203405275 203405442 -14631716 - MER105 DNA DNA -52 152 1 208 199 43 149 chr3 203406556 203406697 -14630461 + MIR SINE MIR 132 257 -5 285 327 75 38 chr3 203406718 203406877 -14630281 - MIR SINE MIR -71 191 27 907 210 112 49 chr3 203406898 203406989 -14630169 - MER5C DNA MER1_type 0 324 240 2184 63 0 14 chr3 203406989 203407329 -14629829 + AluY SINE Alu 1 336 0 907 210 112 49 chr3 203407329 203407540 -14629618 - MER5C DNA MER1_type -84 240 1 324 259 40 130 chr3 203407552 203407741 -14629417 + MER5A DNA MER1_type 4 189 0 1223 249 109 26 chr3 203407998 203408428 -14628730 - L2 LINE L2 -1135 2179 1714 608 275 169 18 chr3 203408719 203409162 -14627996 - L1MC5 LINE L1 -178 7783 7274 1282 112 0 11 chr3 203409162 203409340 -14627818 + AluSg/x SINE Alu 134 309 -3 226 302 0 0 chr3 203409363 203409416 -14627742 - L1MC4a LINE L1 -460 7348 7296 2219 275 157 17 chr3 203409468 203410486 -14626672 - L2 LINE L2 -1606 1708 548 192 338 0 0 chr3 203410486 203410563 -14626595 + MIR SINE MIR 165 241 -21 1014 58 0 0 chr3 203410821 203410941 -14626217 - AluSp SINE Alu -193 120 1 2084 103 0 11 chr3 203411255 203411536 -14625622 + AluSg SINE Alu 1 278 -32 305 237 79 0 chr3 203411542 203411618 -14625540 - MIR SINE MIR -156 106 25 587 350 117 22 chr3 203412046 203412540 -14624618 - L3 LINE CR1 -17 1560 1020 764 281 25 0 chr3 203412689 203412927 -14624231 - AluSx SINE Alu -45 267 24 800 138 23 8 chr3 203413121 203413251 -14623907 + AluJb SINE Alu 157 288 -24 34 65 0 0 chr3 203413251 203413313 -14623845 + AT_rich Low_complexity Low_complexity 1 62 0 1866 139 17 24 chr3 203413326 203413621 -14623537 - AluSx SINE Alu -19 293 1 2449 66 7 16 chr3 203413635 203413940 -14623218 - AluY SINE Alu -9 302 1 297 256 92 55 chr3 203413958 203414122 -14623036 + L3 LINE CR1 1341 1510 -67 321 200 29 14 chr3 203414532 203414602 -14622556 + MIR SINE MIR 92 162 -100 2138 126 3 0 chr3 203414647 203414941 -14622217 - AluSx SINE Alu -17 295 1 396 321 10 72 chr3 203414944 203415153 -14622005 - MIR SINE MIR -62 200 5 255 174 0 0 chr3 203415155 203415201 -14621957 + MIR SINE MIR 217 262 0 362 256 18 89 chr3 203415679 203415847 -14621311 - L2 LINE L2 0 3313 3158 777 192 64 21 chr3 203416340 203416574 -14620584 + AluSq SINE Alu 2 245 -68 23106 58 2 3 chr3 203416710 203420163 -14616995 - L1PA6 LINE L1 -290 5864 2415 1820 61 0 13 chr3 203420264 203420495 -14616663 + L1PA6 LINE L1 5922 6149 -5 433 121 24 12 chr3 203422154 203422237 -14614921 + CT-rich Low_complexity Low_complexity 2 85 0 251 65 0 0 chr3 203422237 203422268 -14614890 + (TC)n Simple_repeat Simple_repeat 2 32 0 594 256 42 12 chr3 203423035 203423203 -14613955 - LTR33 LTR ERVL -2 519 347 365 293 41 8 chr3 203423237 203423360 -14613798 - LTR33 LTR ERVL -239 282 156 480 314 49 59 chr3 203423400 203423606 -14613552 - LTR33 LTR ERVL -237 284 80 2454 99 0 0 chr3 203423606 203423918 -14613240 + AluSx SINE Alu 1 312 0 480 314 49 59 chr3 203423918 203423998 -14613160 - LTR33 LTR ERVL -441 80 1 267 270 61 9 chr3 203424047 203424162 -14612996 - L2 LINE L2 -1 3312 3192 2646 68 0 0 chr3 203424533 203424844 -14612314 + AluY SINE Alu 1 311 0 515 215 8 25 chr3 203424851 203424972 -14612186 + L1MA2 LINE L1 6172 6290 -14 431 130 20 30 chr3 203425395 203425495 -14611663 + AluSg/x SINE Alu 168 266 -46 306 332 102 51 chr3 203425652 203425965 -14611193 + L2 LINE L2 2934 3262 -10 * 591 212 212 5 chr3 203425953 203426142 -14611016 - MIR SINE MIR -10 252 25 242 35 0 0 chr3 203426489 203426518 -14610640 + Alu SINE Alu 94 122 -44 209 333 0 0 chr3 203426637 203426694 -14610464 + L2 LINE L2 2990 3046 -226 2029 142 3 0 chr3 203426749 203427057 -14610101 + AluSx SINE Alu 1 309 0 13682 122 16 10 chr3 203427266 203429343 -14607815 + L1P LINE L1 15 2105 -4041 675 126 0 45 chr3 203429443 203429554 -14607604 + THE1C LTR MaLR 270 375 0 1049 106 0 14 chr3 203429755 203429897 -14607261 + AluY SINE Alu 1 140 -171 2305 72 3 23 chr3 203429897 203430201 -14606957 + AluY SINE Alu 1 298 -13 392 291 61 7 chr3 203430619 203430767 -14606391 + MIR SINE MIR 61 216 -46 716 182 166 5 chr3 203430767 203430952 -14606206 + MER33 DNA MER1_type 1 215 -109 229 151 302 0 chr3 203430952 203431005 -14606153 + Tigger2 DNA MER2_type 1 69 -2649 * 2227 127 62 5 chr3 203430995 203431366 -14605792 + Tigger2 DNA MER2_type 2273 2664 -54 311 297 0 0 chr3 203431397 203431461 -14605697 + Tigger2 DNA MER2_type 2643 2706 -12 26 30 0 0 chr3 203431504 203431537 -14605621 + AT_rich Low_complexity Low_complexity 1 33 0 812 100 73 0 chr3 203431540 203431650 -14605508 - AluJb SINE Alu -194 118 1 284 168 11 137 chr3 203431650 203431745 -14605413 + MER33 DNA MER1_type 281 363 0 1749 174 24 3 chr3 203431841 203432134 -14605024 - AluJb SINE Alu -12 300 2 403 310 31 8 chr3 203432213 203432342 -14604816 + MIR SINE MIR 19 150 -58 2144 122 0 0 chr3 203433759 203434046 -14603112 - AluSx SINE Alu -17 295 9 957 81 0 0 chr3 203434079 203434203 -14602955 - AluSg/x SINE Alu 0 309 186 1685 303 123 19 chr3 203434228 203435313 -14601845 + L2 LINE L2 2120 3309 -4 214 295 26 0 chr3 203435320 203435398 -14601760 - MIR SINE MIR -77 185 106 3192 58 12 10 chr3 203435402 203435812 -14601346 - L1PA10 LINE L1 0 6168 5758 540 200 0 0 chr3 203435981 203436086 -14601072 - FLAM_C SINE Alu -37 106 2 530 208 78 83 chr3 203436136 203436328 -14600830 + MLT1J LTR MaLR 5 195 -316 354 253 62 82 chr3 203437240 203437376 -14599782 + MIR SINE MIR 16 148 -114 2372 94 7 0 chr3 203437376 203437683 -14599475 + AluSg SINE Alu 1 309 -1 354 253 62 82 chr3 203437683 203437740 -14599418 + MIR SINE MIR 148 205 -57 203 381 55 39 chr3 203437744 203438054 -14599104 + L2 LINE L2 2831 3145 -127 2309 106 0 3 chr3 203438123 203438424 -14598734 + AluSx SINE Alu 3 302 -10 234 205 0 0 chr3 203438433 203438472 -14598686 + MER21A LTR ERV1 226 264 -667 2957 139 69 30 chr3 203438474 203439013 -14598145 + MER21A LTR ERV1 372 931 0 1818 184 40 75 chr3 203439048 203439563 -14597595 - MER4D LTR ERV1 -225 666 62 1569 154 32 14 chr3 203439555 203439835 -14597323 - MER49 LTR ERV1 -638 285 1 * 576 276 89 31 chr3 203439835 203440128 -14597030 + L2 LINE L2 3003 3312 -1 3407 52 5 5 chr3 203440135 203440562 -14596596 + L1PA4 LINE L1 5729 6155 0 239 114 23 0 chr3 203440707 203440751 -14596407 + (TA)n Simple_repeat Simple_repeat 2 46 0 2207 102 7 3 chr3 203440752 203441056 -14596102 - AluY SINE Alu -6 305 1 325 289 116 16 chr3 203441123 203441313 -14595845 - MIR SINE MIR -14 248 40 203 159 0 23 chr3 203441770 203441814 -14595344 - L2 LINE L2 -1 3312 3270 2276 111 0 0 chr3 203442041 203442347 -14594811 - AluSx SINE Alu -5 307 2 346 338 74 23 chr3 203442367 203442666 -14594492 - L2 LINE L2 -590 2724 2411 908 211 6 6 chr3 203442674 203442835 -14594323 + Tigger7 DNA MER2_type 10 170 -380 299 98 0 0 chr3 203442839 203442880 -14594278 + Tigger7 DNA MER2_type 2209 2249 -238 4142 225 31 21 chr3 203442880 203444462 -14592696 + L1MB3 LINE L1 4267 5890 -281 288 0 0 0 chr3 203444462 203444494 -14592664 + (CA)n Simple_repeat Simple_repeat 1 32 0 1207 133 5 19 chr3 203444505 203444716 -14592442 + L1MB3 LINE L1 5967 6174 -9 1835 253 112 54 chr3 203444834 203446116 -14591042 + L1ME LINE L1 4 1355 -4725 2128 125 13 7 chr3 203446116 203446593 -14590565 + AluSx SINE Alu 1 312 0 1835 253 112 54 chr3 203446593 203446704 -14590454 + L1ME LINE L1 1355 1458 -4622 2098 90 6 35 chr3 203447237 203447549 -14589609 - AluY SINE Alu -8 303 1 247 281 0 0 chr3 203448368 203448432 -14588726 - L2 LINE L2 -9 3263 3200 488 293 71 18 chr3 203449467 203449692 -14587466 + MIR SINE MIR 20 256 -6 288 222 141 20 chr3 203450240 203450339 -14586819 - MIR SINE MIR -81 127 17 420 314 0 15 chr3 203450656 203450793 -14586365 + MIR SINE MIR 20 154 -108 213 219 78 0 chr3 203450808 203450872 -14586286 + MER91C DNA MER1_type 35 103 -37 820 117 66 0 chr3 203452573 203452710 -14584448 - L1MA5 LINE L1 -3 6297 6152 321 312 111 5 chr3 203454557 203454746 -14582412 - MIR SINE MIR -48 214 6 329 355 45 20 chr3 203454853 203455098 -14582060 - L2 LINE L2 -339 2975 2725 1076 195 29 0 chr3 203455782 203455987 -14581171 - MER58A DNA MER1_type 0 224 14 356 71 36 0 chr3 203455988 203456044 -14581114 - Alu SINE Alu -5 295 238 195 42 0 0 chr3 203456740 203456764 -14580394 + (CA)n Simple_repeat Simple_repeat 2 25 0 403 241 0 0 chr3 203457164 203457243 -14579915 - MER63 DNA MER1_type -88 748 44 200 243 63 72 chr3 203457984 203458095 -14579063 - MIR3 SINE MIR 0 208 99 1755 73 5 0 chr3 203458369 203458589 -14578569 - AluY SINE Alu -16 295 75 4638 120 18 11 chr3 203458599 203459308 -14577850 - L1PA13 LINE L1 -2 6161 5448 21 57 0 0 chr3 203460212 203460247 -14576911 + AT_rich Low_complexity Low_complexity 1 35 0 2288 96 0 3 chr3 203460253 203460546 -14576612 + AluSq SINE Alu 1 292 -21 380 262 36 129 chr3 203460860 203461246 -14575912 - L1ME4a LINE L1 -271 5850 5501 2090 121 7 26 chr3 203462507 203462813 -14574345 + AluSx SINE Alu 1 300 -12 28 29 0 0 chr3 203462983 203463018 -14574140 + AT_rich Low_complexity Low_complexity 1 35 0 316 212 200 30 chr3 203464264 203464429 -14572729 - MIR SINE MIR -14 248 56 2189 99 0 3 chr3 203464787 203465109 -14572049 - AluSx SINE Alu 0 322 2 1232 240 63 96 chr3 203465121 203465800 -14571358 - HAL1 LINE L1 -5 2502 1846 2705 271 87 29 chr3 203465807 203466303 -14570855 - HAL1 LINE L1 -751 1756 1290 1872 159 3 29 chr3 203466303 203466618 -14570540 - AluJb SINE Alu -4 308 2 2705 271 87 29 chr3 203466618 203467276 -14569882 - HAL1 LINE L1 -1217 1290 536 501 174 128 9 chr3 203467438 203467547 -14569611 - MER46C DNA MER2_type -209 129 8 294 261 14 0 chr3 203467727 203467796 -14569362 + MIR SINE MIR 51 120 -142 6778 116 8 9 chr3 203467796 203467979 -14569179 + L1P4 LINE L1 4315 4497 -1671 2343 101 0 7 chr3 203467979 203468285 -14568873 + AluSc SINE Alu 1 304 -5 6778 116 8 9 chr3 203468285 203469469 -14567689 + L1P4 LINE L1 4497 5675 -493 779 155 37 19 chr3 203469777 203469938 -14567220 - AluSg/x SINE Alu -37 273 110 271 174 0 29 chr3 203469938 203470007 -14567151 + CT-rich Low_complexity Low_complexity 3 69 0 234 0 0 0 chr3 203470650 203470676 -14566482 + (TGG)n Simple_repeat Simple_repeat 3 28 0 1687 150 7 38 chr3 203471329 203471622 -14565536 - AluJb SINE Alu 0 312 29 366 275 28 73 chr3 203471704 203471922 -14565236 - L2 LINE L2 -12 3301 3094 2144 116 3 28 chr3 203471926 203472246 -14564912 + AluSx SINE Alu 1 312 0 264 211 92 70 chr3 203472354 203472582 -14564576 + L1ME4a LINE L1 5774 6006 -115 1007 140 58 0 chr3 203472688 203472859 -14564299 + AluJo SINE Alu 121 301 -11 22 0 0 54 chr3 203473527 203473543 -14563615 + AT_rich Low_complexity Low_complexity 1 16 -19 10775 209 11 5 chr3 203473543 203476682 -14560476 - L1PA16 LINE L1 -9 6157 2986 22 0 0 54 chr3 203476682 203476702 -14560456 + AT_rich Low_complexity Low_complexity 16 35 0 1792 145 17 7 chr3 203477010 203477300 -14559858 - AluSx SINE Alu -6 306 14 2292 99 7 0 chr3 203477527 203477819 -14559339 - AluSq SINE Alu -19 294 1 1611 124 50 0 chr3 203477854 203478095 -14559063 + MER9 LTR ERVK 1 253 -258 468 269 159 48 chr3 203478428 203478800 -14558358 + LTR16A LTR ERVL 14 426 -24 230 368 30 6 chr3 203479116 203479282 -14557876 + L2 LINE L2 2686 2855 -459 308 109 55 18 chr3 203479687 203479742 -14557416 + HERVS71 LTR ERV1 8901 8957 -21 2289 180 36 70 chr3 203479759 203480341 -14556817 + LTR6A LTR ERV1 3 564 0 2306 84 7 7 chr3 203480603 203480902 -14556256 - AluSx SINE Alu -9 303 5 248 318 40 16 chr3 203481106 203481231 -14555927 + MIR3 SINE MIR 34 161 -47 319 292 56 25 chr3 203481231 203481392 -14555766 - MER5B DNA MER1_type -1 177 12 433 257 18 9 chr3 203483296 203483405 -14553753 - MIR SINE MIR -62 146 37 368 286 95 12 chr3 203483957 203484125 -14553033 - MIR SINE MIR -73 189 8 2096 106 3 3 chr3 203484412 203484739 -14552419 - AluSq SINE Alu 0 327 1 223 293 0 49 chr3 203484923 203485005 -14552153 - L2 LINE L2 -1 3271 3194 342 268 207 17 chr3 203485409 203485588 -14551570 - MIR SINE MIR -20 242 30 321 280 10 0 chr3 203485653 203485753 -14551405 + L2 LINE L2 2221 2321 -993 361 306 116 5 chr3 203486333 203486549 -14550609 + MIR SINE MIR 20 259 -3 239 299 103 0 chr3 203486586 203486693 -14550465 - L2 LINE L2 -22 3250 3133 215 188 109 0 chr3 203487522 203487586 -14549572 - MIR SINE MIR -12 250 180 * 304 320 30 0 chr3 203487580 203487680 -14549478 + L2 LINE L2 1117 1219 -2095 1723 124 62 24 chr3 203487680 203487970 -14549188 - AluSc SINE Alu -8 301 1 929 110 16 0 chr3 203488315 203488442 -14548716 + AluSx SINE Alu 1 129 -184 243 171 40 0 chr3 203488444 203488520 -14548638 + (TA)n Simple_repeat Simple_repeat 2 80 0 1075 138 54 0 chr3 203488527 203488694 -14548464 + AluSx SINE Alu 125 300 -10 305 347 107 20 chr3 203488820 203489212 -14547946 + L2 LINE L2 1962 2387 -927 1512 171 20 52 chr3 203489312 203489617 -14547541 - AluJo SINE Alu -17 295 1 570 218 35 0 chr3 203489638 203489780 -14547378 - Charlie1 DNA MER1_type -1 2760 2614 38 0 0 0 chr3 203490291 203490329 -14546829 + AT_rich Low_complexity Low_complexity 1 38 0 4024 180 39 121 chr3 203490380 203490938 -14546220 - Charlie1 DNA MER1_type -171 2590 1988 1741 204 48 33 chr3 203490938 203491398 -14545760 - MLT1C LTR MaLR 0 467 1 4024 180 39 121 chr3 203491398 203491873 -14545285 - Charlie1 DNA MER1_type -773 1988 1475 1749 180 0 17 chr3 203491873 203492168 -14544990 + AluJb SINE Alu 5 294 -18 4024 180 39 121 chr3 203492168 203492480 -14544678 - Charlie1 DNA MER1_type -1286 1475 45 267 315 79 12 chr3 203492568 203492733 -14544425 + L2 LINE L2 2612 2787 -527 276 298 99 25 chr3 203492791 203492952 -14544206 + L2 LINE L2 2871 3043 -229 1143 155 0 11 chr3 203493046 203493227 -14543931 - AluSx SINE Alu -13 299 121 33442 98 13 62 chr3 203493231 203499694 -14537464 - L1PA7 LINE L1 -10 6144 12 1036 98 0 0 chr3 203499707 203499840 -14537318 - AluSx SINE Alu -179 133 1 186 237 119 0 chr3 203499897 203499956 -14537202 - MIR SINE MIR -1 261 196 2218 109 3 10 chr3 203500050 203500376 -14536782 - AluSp SINE Alu 0 313 1 1236 201 86 7 chr3 203500525 203500794 -14536364 - AluJo SINE Alu -12 290 1 2149 100 3 36 chr3 203500934 203501235 -14535923 + AluSq SINE Alu 1 291 -22 720 210 30 0 chr3 203501974 203502141 -14535017 + MIR SINE MIR 82 253 -9 322 319 119 11 chr3 203502145 203502330 -14534828 + MIR SINE MIR 47 251 -11 788 144 69 11 chr3 203502350 203502524 -14534634 + AluSg SINE Alu 2 185 -125 186 189 0 0 chr3 203552850 203552887 -14484271 + A-rich Low_complexity Low_complexity 1 37 0 207 0 0 0 chr3 203552969 203552992 -14484166 + (T)n Simple_repeat Simple_repeat 1 23 0 1834 156 40 10 chr3 203555363 203555664 -14481494 + AluSx SINE Alu 1 310 -2 766 140 0 0 chr3 203555726 203555833 -14481325 + FRAM SINE Alu 45 151 -25 1931 129 23 60 chr3 203557490 203557571 -14479587 + MER44D DNA MER2_type 1 83 -2408 2202 109 0 0 chr3 203557571 203557877 -14479281 + AluSx SINE Alu 1 306 0 1931 129 23 60 chr3 203557877 203558144 -14479014 + MER44D DNA MER2_type 83 607 -2 1915 175 77 18 chr3 203558285 203558674 -14478484 + MSTB LTR MaLR 1 412 -14 1851 62 13 0 chr3 203558702 203558927 -14478231 - AluY SINE Alu -14 297 70 1153 200 106 69 chr3 203559083 203559433 -14477725 - MLT1A1 LTR MaLR -2 363 1 468 274 22 7 chr3 203559462 203559597 -14477561 - MER5A DNA MER1_type -51 138 2 2063 122 27 14 chr3 203559777 203559935 -14477223 - AluSx SINE Alu -13 299 134 2459 92 3 0 chr3 203559935 203560239 -14476919 - AluSp SINE Alu -8 305 1 2063 122 27 14 chr3 203560239 203560375 -14476783 - AluSx SINE Alu -178 134 1 1069 369 10 10 chr3 203560448 203561026 -14476132 - HERV16 LTR ERVL -1551 4213 3636 413 233 0 0 chr3 203561034 203561124 -14476034 + MLT1E LTR MaLR 1 90 -503 1535 278 64 54 chr3 203561167 203561529 -14475629 - HERV16 LTR ERVL -4273 723 366 2424 100 0 0 chr3 203561529 203561838 -14475320 - AluSq SINE Alu -4 309 1 1535 278 64 54 chr3 203561838 203562183 -14474975 - HERV16 LTR ERVL -4630 366 9 737 295 126 30 chr3 203562183 203562390 -14474768 - LTR16A LTR ERVL -7 443 257 1580 192 57 93 chr3 203562390 203562470 -14474688 - MSTB2 LTR MaLR 0 457 376 11012 30 0 143 chr3 203562470 203564087 -14473071 + SVA Other Other 1 1386 0 1580 192 57 93 chr3 203564087 203564480 -14472678 - MSTB2 LTR MaLR -81 376 1 737 295 126 30 chr3 203564480 203564645 -14472513 - LTR16A LTR ERVL -193 257 35 798 176 0 8 chr3 203564706 203564831 -14472327 - FLAM_C SINE Alu -9 124 1 1745 169 35 10 chr3 203564957 203565247 -14471911 + AluSx SINE Alu 1 297 -15 603 154 77 0 chr3 203565258 203565362 -14471796 + FLAM_C SINE Alu 2 113 -30 267 31 0 0 chr3 203565363 203565395 -14471763 + (TC)n Simple_repeat Simple_repeat 2 33 0 297 0 0 0 chr3 203565409 203565442 -14471716 + (CA)n Simple_repeat Simple_repeat 2 34 0 2186 102 0 52 chr3 203565549 203565873 -14471285 + AluSg SINE Alu 3 309 -1 289 383 23 0 chr3 203566117 203566245 -14470913 + MER91A DNA MER1_type 28 158 -38 204 311 54 0 chr3 203566336 203566410 -14470748 + MIR SINE MIR 15 92 -170 1665 203 14 27 chr3 203566410 203566779 -14470379 + MLT1A1 LTR MaLR 1 364 -1 2220 92 7 0 chr3 203566794 203567102 -14470056 - AluSx SINE Alu 0 310 1 347 205 52 2 chr3 203567196 203567296 -14469862 - L1ME2 LINE L1 -1 6333 6067 241 244 146 41 chr3 203567465 203567588 -14469570 + L2 LINE L2 3136 3271 -1 24 0 0 0 chr3 203568153 203568177 -14468981 + GC_rich Low_complexity Low_complexity 1 24 0 206 335 82 13 chr3 203568920 203569078 -14468080 - MIR SINE MIR -14 248 80 * 439 176 12 12 chr3 203569053 203569138 -14468020 - L2 LINE L2 -4 3309 3225 238 240 93 54 chr3 203569184 203569313 -14467845 + HAL1b LINE L1 1205 1338 -10 2063 134 0 3 chr3 203569422 203569727 -14467431 + AluJb SINE Alu 1 304 -8 245 250 71 12 chr3 203570498 203570582 -14466576 - MIR3 SINE MIR -3 205 117 186 191 85 0 chr3 203570599 203570646 -14466512 - L2 LINE L2 -49 3264 3214 2253 112 0 0 chr3 203570756 203571043 -14466115 - AluSx SINE Alu -25 287 1 530 275 57 62 chr3 203571113 203571324 -14465834 + MER102a DNA MER1_type 121 330 0 1803 92 153 11 chr3 203571762 203572023 -14465135 - AluSx SINE Alu -14 298 1 2213 116 13 0 chr3 203572058 203572361 -14464797 - AluSp SINE Alu -6 307 1 1866 94 0 0 chr3 203572370 203572604 -14464554 - AluY SINE Alu -6 305 72 277 271 66 8 chr3 203573251 203573373 -14463785 - L2 LINE L2 -67 3246 3118 1892 143 0 14 chr3 203573849 203574135 -14463023 + AluSx SINE Alu 1 282 -30 1681 155 102 7 chr3 203574363 203574647 -14462511 - AluSx SINE Alu -1 311 1 180 309 18 0 chr3 203575184 203575239 -14461919 - L2 LINE L2 -48 3265 3210 25 0 0 0 chr3 203576461 203576486 -14460672 + AT_rich Low_complexity Low_complexity 1 25 0 2432 82 0 0 chr3 203577327 203577620 -14459538 + AluSx SINE Alu 1 293 -19 261 0 0 0 chr3 203578051 203578080 -14459078 + (TG)n Simple_repeat Simple_repeat 2 30 0 345 296 62 49 chr3 203578177 203578280 -14458878 + L1ME4a LINE L1 5576 5676 -445 2259 92 0 0 chr3 203578280 203578594 -14458564 - AluSg SINE Alu 0 314 1 345 296 62 49 chr3 203578594 203578793 -14458365 + L1ME4a LINE L1 5676 5883 -238 1725 172 52 3 chr3 203578816 203579107 -14458051 + AluJo SINE Alu 1 305 -7 293 73 24 0 chr3 203579509 203579550 -14457608 + U2 snRNA snRNA 1 42 -146 186 229 16 82 chr3 203579791 203579852 -14457306 + MIR3 SINE MIR 135 191 -17 2712 149 63 28 chr3 203579935 203580085 -14457073 + L1MB8 LINE L1 5174 5317 -861 2535 64 0 0 chr3 203580085 203580380 -14456778 + AluY SINE Alu 1 295 -16 2712 149 63 28 chr3 203580380 203581112 -14456046 + L1MB8 LINE L1 5317 6176 -2 205 260 80 0 chr3 203582444 203582494 -14454664 - L2 LINE L2 -5 3267 3214 1901 110 65 21 chr3 203582616 203582906 -14454252 - AluSx SINE Alu -9 303 1 413 154 123 39 chr3 203587050 203587180 -14449978 + AluJb SINE Alu 1 141 -161 23 33 0 0 chr3 203591759 203591789 -14445369 + AT_rich Low_complexity Low_complexity 1 30 0 1922 102 87 4 chr3 203592730 203593005 -14444153 + AluSc SINE Alu 4 301 -8 2191 133 0 0 chr3 203593313 203593622 -14443536 + AluY SINE Alu 1 309 -2 183 156 0 0 chr3 203593664 203593696 -14443462 + T-rich Low_complexity Low_complexity 1 32 0 887 154 0 0 chr3 203593847 203593983 -14443175 + AluSq/x SINE Alu 1 136 -177 2268 117 7 0 chr3 203593983 203594290 -14442868 + AluSq SINE Alu 1 309 -4 2070 184 70 42 chr3 203594309 203594765 -14442393 + MER21A LTR ERV1 384 903 -11 513 213 63 63 chr3 203594767 203594941 -14442217 - AluJb SINE Alu -1 311 138 1507 129 0 55 chr3 203594943 203595198 -14441960 - AluJb SINE Alu -8 304 64 2356 88 0 10 chr3 203595487 203595792 -14441366 + AluSp SINE Alu 1 302 -11 2074 131 3 7 chr3 203595804 203596101 -14441057 + AluSq SINE Alu 1 296 -17 1324 272 57 27 chr3 203596634 203596733 -14440425 + HAL1 LINE L1 1 96 -2411 1359 170 124 11 chr3 203596733 203596998 -14440160 + AluJb SINE Alu 3 297 -15 1324 272 57 27 chr3 203596998 203597376 -14439782 + HAL1 LINE L1 96 492 -2015 1001 249 114 61 chr3 203597566 203597809 -14439349 - L2 LINE L2 -954 2360 2131 2375 95 0 7 chr3 203597809 203598114 -14439044 - AluSq SINE Alu -10 303 1 1001 249 114 61 chr3 203598114 203598380 -14438778 - L2 LINE L2 -1183 2131 1824 1663 176 32 4 chr3 203598454 203598732 -14438426 - AluJo SINE Alu -17 295 10 319 273 81 68 chr3 203598741 203598859 -14438299 + L1MEd LINE L1 87 209 -5910 3419 97 60 46 chr3 203598859 203599445 -14437713 - MER4A LTR ERV1 -4 596 3 319 273 81 68 chr3 203599445 203599487 -14437671 + L1MEd LINE L1 209 249 -5870 375 113 0 0 chr3 203599494 203599556 -14437602 + (TA)n Simple_repeat Simple_repeat 2 63 0 2142 114 7 0 chr3 203599556 203599836 -14437322 - AluSx SINE Alu -30 282 1 489 198 8 33 chr3 203599837 203599958 -14437200 - L1MC3 LINE L1 -6 7779 7662 286 269 59 78 chr3 203600106 203600304 -14436854 + L1MEd LINE L1 650 843 -5276 946 111 0 22 chr3 203600304 203600439 -14436719 + FLAM_C SINE Alu 2 133 0 286 269 59 78 chr3 203600439 203600496 -14436662 + L1MEd LINE L1 843 900 -5219 2073 101 4 4 chr3 203600505 203600782 -14436376 + AluSx SINE Alu 1 277 -35 195 42 0 0 chr3 203600789 203600813 -14436345 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 27 0 0 0 chr3 203601351 203601378 -14435780 + AT_rich Low_complexity Low_complexity 1 27 0 28 48 0 0 chr3 203601518 203601560 -14435598 + AT_rich Low_complexity Low_complexity 1 42 0 2313 108 0 0 chr3 203601560 203601857 -14435301 - AluSq SINE Alu -16 297 1 808 165 0 23 chr3 203601864 203601997 -14435161 - FLAM_C SINE Alu -3 130 1 381 210 50 10 chr3 203601997 203602097 -14435061 + L1ME4a LINE L1 5990 6093 -28 386 203 7 128 chr3 203602730 203602808 -14434350 + MIR SINE MIR 15 101 -161 2275 92 0 10 chr3 203602808 203603113 -14434045 - AluY SINE Alu -7 304 3 1220 207 9 104 chr3 203603117 203603304 -14433854 - AluSp SINE Alu -7 306 164 1305 167 21 103 chr3 203603304 203603634 -14433524 - AluYb8 SINE Alu -15 303 1 1220 207 9 104 chr3 203603634 203603784 -14433374 - AluSp SINE Alu -149 164 1 386 203 7 128 chr3 203603784 203603848 -14433310 + MIR SINE MIR 104 144 -118 329 225 11 11 chr3 203603978 203604067 -14433091 - MER5B DNA MER1_type -89 89 1 700 229 21 68 chr3 203604075 203604220 -14432938 + MER5A DNA MER1_type 1 136 -53 2395 101 3 0 chr3 203604220 203604528 -14432630 - AluSq SINE Alu -4 309 1 700 229 21 68 chr3 203604528 203604574 -14432584 + MER5A DNA MER1_type 136 183 -6 193 316 13 25 chr3 203604580 203604619 -14432539 + L2 LINE L2 3148 3186 -86 1726 183 37 0 chr3 203604619 203604795 -14432363 - AluJo SINE Alu -1 311 118 186 43 0 0 chr3 203604795 203604818 -14432340 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1726 183 37 0 chr3 203604818 203604941 -14432217 - AluJo SINE Alu -194 118 1 193 316 13 25 chr3 203604941 203604980 -14432178 + L2 LINE L2 3186 3225 -47 269 306 51 20 chr3 203605005 203605103 -14432055 - L2 LINE L2 -4 3268 3168 2305 90 3 29 chr3 203605268 203605579 -14431579 - AluSq SINE Alu -10 303 1 3483 121 6 2 chr3 203605675 203606170 -14430988 + LOR1a LTR ERV1 1 497 0 1073 260 52 6 chr3 203606197 203606598 -14430560 - MLT2E LTR ERVL 0 628 167 2426 96 0 3 chr3 203606608 203606920 -14430238 - AluSx SINE Alu -1 311 1 1554 113 0 14 chr3 203606961 203607182 -14429976 - AluSq SINE Alu -95 218 1 345 272 139 12 chr3 203607188 203607361 -14429797 - MIR SINE MIR -66 196 2 2258 110 7 0 chr3 203607467 203607767 -14429391 - AluSp SINE Alu -11 302 1 2256 91 0 28 chr3 203608259 203608577 -14428581 - AluSx SINE Alu -3 309 1 423 325 90 5 chr3 203609378 203609578 -14427580 + MIR SINE MIR 34 250 -12 2092 126 7 0 chr3 203609578 203609871 -14427287 - AluSx SINE Alu -17 295 1 989 93 0 0 chr3 203611405 203611534 -14425624 - AluSg/x SINE Alu -7 305 177 1249 114 0 0 chr3 203613020 203613372 -14423786 + AluSx SINE Alu 1 352 0 414 301 52 0 chr3 203613902 203614038 -14423120 + MIR SINE MIR 117 259 -3 198 241 0 19 chr3 203614152 203614206 -14422952 - MER5A DNA MER1_type -1 188 136 2421 79 13 3 chr3 203614241 203614545 -14422613 - AluSq SINE Alu -6 307 1 2468 79 3 0 chr3 203615447 203615750 -14421408 - AluSp SINE Alu -9 304 1 23 33 0 0 chr3 203615750 203615780 -14421378 + AT_rich Low_complexity Low_complexity 1 30 0 1897 170 0 10 chr3 203616037 203616337 -14420821 + AluSx SINE Alu 1 297 -15 1963 159 0 9 chr3 203616456 203616771 -14420387 + AluSx SINE Alu 1 312 0 438 290 48 35 chr3 203616991 203617222 -14419936 + L1ME LINE L1 5310 5543 -578 2093 123 31 3 chr3 203617255 203617547 -14419611 - AluSx SINE Alu -12 300 1 650 188 0 8 chr3 203618374 203618491 -14418667 + FLAM_A SINE Alu 1 116 -17 1690 166 11 14 chr3 203618519 203618664 -14418494 - AluJb SINE Alu -35 277 132 2422 92 0 13 chr3 203618664 203618980 -14418178 - AluSq SINE Alu -1 312 1 1690 166 11 14 chr3 203618980 203619112 -14418046 - AluJb SINE Alu -180 132 1 2005 124 0 14 chr3 203619462 203619640 -14417518 - AluSx SINE Alu -14 298 124 500 81 68 0 chr3 203619640 203619714 -14417444 + MADE1 DNA Mariner 1 79 -1 2005 124 0 14 chr3 203619714 203619826 -14417332 - AluSx SINE Alu -188 124 12 314 302 54 39 chr3 203619840 203620098 -14417060 - L1MC4a LINE L1 -1865 5943 5682 635 183 8 15 chr3 203620589 203620720 -14416438 + FLAM_C SINE Alu 1 130 -3 279 0 0 0 chr3 203620724 203620755 -14416403 + (CA)n Simple_repeat Simple_repeat 2 32 0 991 133 13 6 chr3 203620804 203620962 -14416196 - AluSp SINE Alu -2 311 153 2435 87 0 0 chr3 203621644 203621944 -14415214 - AluSx SINE Alu -12 300 1 2239 109 0 0 chr3 203622393 203622719 -14414439 - AluSq SINE Alu 0 326 1 2103 117 4 0 chr3 203622737 203623048 -14414110 - AluSg SINE Alu 0 312 1 2309 109 0 13 chr3 203623104 203623416 -14413742 - AluSq SINE Alu -3 310 3 440 111 0 0 chr3 203623782 203623854 -14413304 - Alu SINE Alu 0 312 241 2249 108 0 3 chr3 203624285 203624581 -14412577 + AluSx SINE Alu 1 295 -17 753 147 0 0 chr3 203624823 203624939 -14412219 + FLAM_C SINE Alu 28 143 0 619 108 0 0 chr3 203625271 203625364 -14411794 + AluSg/x SINE Alu 207 299 -11 1415 105 110 194 chr3 203625364 203625438 -14411720 + MLT1D LTR MaLR 115 194 -311 2116 83 0 0 chr3 203625438 203625704 -14411454 + AluY SINE Alu 32 297 -14 1415 105 110 194 chr3 203625704 203625980 -14411178 + MLT1D LTR MaLR 194 425 -80 2422 85 0 0 chr3 203625980 203626274 -14410884 + AluSx SINE Alu 1 294 -18 1415 105 110 194 chr3 203626274 203626349 -14410809 + MLT1D LTR MaLR 425 505 0 679 154 0 0 chr3 203626593 203626703 -14410455 - AluJb SINE Alu -13 299 190 474 192 0 20 chr3 203626705 203626804 -14410354 - AluSc SINE Alu -74 235 139 1198 128 23 0 chr3 203626827 203626999 -14410159 - AluSx SINE Alu -16 294 119 16725 118 17 116 chr3 203627160 203630654 -14406504 - L1P LINE L1 -2987 3159 12 1036 98 0 0 chr3 203630667 203630800 -14406358 - AluSx SINE Alu -180 133 1 186 237 119 0 chr3 203630857 203630916 -14406242 - MIR SINE MIR -1 261 196 2188 120 3 7 chr3 203631010 203631335 -14405823 - AluSp SINE Alu 0 313 1 1026 155 7 0 chr3 203631337 203631492 -14405666 - AluSc SINE Alu -16 293 138 311 232 170 18 chr3 203632111 203632223 -14404935 - L1MC/D LINE L1 -2001 5807 5679 2301 97 0 13 chr3 203632407 203632757 -14404401 + AluSx SINE Alu 5 350 0 1083 132 0 0 chr3 203632761 203632935 -14404223 + (GAA)n Simple_repeat Simple_repeat 3 176 0 294 303 9 18 chr3 203633361 203633470 -14403688 + MIR3 SINE MIR 69 176 -32 291 203 0 0 chr3 203634236 203634315 -14402843 + (TA)n Simple_repeat Simple_repeat 2 80 0 971 302 16 40 chr3 203634353 203634780 -14402378 - L1ME3A LINE L1 -266 5904 5488 8579 43 8 0 chr3 203634854 203635815 -14401343 + LTR5 LTR ERVK 1 969 0 791 262 149 29 chr3 203635867 203636275 -14400883 - L1MEd LINE L1 -5634 485 29 1679 178 89 0 chr3 203636687 203637024 -14400134 + L1MB8 LINE L1 4646 5012 -1134 5451 50 16 9 chr3 203637091 203638314 -14398844 + SVA Other Other 1 1366 -20 216 0 0 0 chr3 203638317 203638341 -14398817 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 3652 163 56 93 chr3 203638367 203638380 -14398778 + L1MB8 LINE L1 5274 5286 -892 1909 149 0 3 chr3 203638380 203638668 -14398490 + AluJb SINE Alu 1 287 -25 3652 163 56 93 chr3 203638668 203638926 -14398232 + L1MB8 LINE L1 5286 5552 -626 253 133 0 22 chr3 203638926 203638971 -14398187 + Alu SINE Alu 252 295 -5 3652 163 56 93 chr3 203638971 203639193 -14397965 + L1MB8 LINE L1 5552 5781 -397 2534 172 31 86 chr3 203639193 203639319 -14397839 + MER44D DNA MER2_type 1 132 -2355 1915 167 0 3 chr3 203639319 203639619 -14397539 + AluSx SINE Alu 1 299 -13 2534 172 31 86 chr3 203639619 203640074 -14397084 + MER44D DNA MER2_type 132 605 0 3652 163 56 93 chr3 203640074 203640473 -14396685 + L1MB8 LINE L1 5781 6178 0 1949 114 20 33 chr3 203640776 203640910 -14396248 + AluSx SINE Alu 1 135 -177 2345 98 3 0 chr3 203640910 203641206 -14395952 + AluSg SINE Alu 1 297 -13 1949 114 20 33 chr3 203641206 203641377 -14395781 + AluSx SINE Alu 135 302 -10 833 210 80 6 chr3 203641389 203641565 -14395593 - MER5A DNA MER1_type 0 189 1 767 284 77 15 chr3 203642313 203642640 -14394518 - HAL1 LINE L1 -2150 357 11 882 301 63 10 chr3 203642693 203643091 -14394067 - L1ME3A LINE L1 -303 5867 5449 584 245 40 35 chr3 203643126 203643326 -14393832 + L1MC4a LINE L1 7215 7415 -393 230 274 205 17 chr3 203643392 203643626 -14393532 + L1MC4 LINE L1 7495 7772 -270 43 47 0 0 chr3 203643633 203643697 -14393461 + AT_rich Low_complexity Low_complexity 1 64 0 2329 110 3 0 chr3 203643882 203644190 -14392968 + AluSx SINE Alu 1 309 -3 628 95 53 0 chr3 203644202 203644297 -14392861 - L1MB4 LINE L1 0 6180 6081 274 331 8 0 chr3 203644307 203644322 -14392836 - L1MA10 LINE L1 -2 6332 6318 2243 235 107 34 chr3 203644322 203644435 -14392723 - L1ME2 LINE L1 -9 6155 6052 2123 83 4 4 chr3 203644435 203644701 -14392457 + AluSc SINE Alu 20 285 -24 524 15 15 0 chr3 203644701 203644766 -14392392 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 2079 112 14 7 chr3 203644774 203645059 -14392099 + AluSg SINE Alu 1 287 -23 2243 235 107 34 chr3 203645059 203645107 -14392051 - L1ME2 LINE L1 -118 6046 6003 198 0 0 0 chr3 203645107 203645129 -14392029 + (CCA)n Simple_repeat Simple_repeat 2 23 0 2243 235 107 34 chr3 203645129 203645778 -14391380 - L1ME2 LINE L1 -161 6003 5274 1503 192 103 14 chr3 203645779 203646139 -14391019 - L1ME2 LINE L1 -1305 4841 4450 1679 30 10 5 chr3 203646241 203646439 -14390719 + AluY SINE Alu 106 304 -7 385 276 40 22 chr3 203646488 203646716 -14390442 - L1ME3A LINE L1 -837 5309 5078 955 196 6 0 chr3 203646739 203646907 -14390251 + FRAM SINE Alu 1 166 -10 448 323 36 46 chr3 203646907 203647427 -14389731 - L1ME3A LINE L1 -1112 5034 4520 7227 58 16 44 chr3 203647613 203649455 -14387703 - SVA Other Other -552 1386 1 2507 64 0 0 chr3 203649630 203649927 -14387231 + AluY SINE Alu 1 297 -14 774 189 77 0 chr3 203650033 203650176 -14386982 - FRAM SINE Alu -16 160 7 987 179 198 77 chr3 203650251 203650604 -14386554 + MSTD LTR MaLR 1 396 0 21 0 0 0 chr3 203652323 203652344 -14384814 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr3 203652475 203652505 -14384653 + AT_rich Low_complexity Low_complexity 1 30 0 227 235 0 29 chr3 203653364 203653432 -14383726 + L1ME LINE L1 5762 5827 -294 589 158 59 0 chr3 203653547 203653648 -14383510 - FLAM_C SINE Alu -21 122 16 2298 107 0 0 chr3 203653732 203654031 -14383127 + AluSx SINE Alu 1 299 -13 2288 102 3 0 chr3 203654042 203654337 -14382821 + AluSq SINE Alu 8 303 -10 2470 78 0 10 chr3 203654366 203654673 -14382485 + AluSc SINE Alu 1 304 -5 1783 174 10 23 chr3 203654752 203655056 -14382102 + AluJo SINE Alu 3 302 -10 2055 128 7 3 chr3 203655135 203655424 -14381734 + AluSx SINE Alu 1 290 -22 880 129 0 23 chr3 203655558 203655690 -14381468 - FLAM_C SINE Alu -3 130 2 2234 108 0 0 chr3 203655719 203656006 -14381152 - AluSx SINE Alu -25 287 1 3499 117 45 0 chr3 203656146 203656676 -14380482 - MER41C LTR ERV1 0 554 1 1062 185 22 0 chr3 203656728 203656912 -14380246 - AluJo SINE Alu -4 308 121 29 47 0 0 chr3 203656912 203656955 -14380203 + AT_rich Low_complexity Low_complexity 1 43 0 1244 130 0 0 chr3 203656955 203657124 -14380034 - AluSx SINE Alu -23 289 121 395 95 32 0 chr3 203657124 203657187 -14379971 - L1MD1 LINE L1 -255 5987 5923 895 111 0 0 chr3 203657269 203657386 -14379772 - AluSx SINE Alu -196 117 1 3369 158 37 37 chr3 203657386 203657518 -14379640 - L1MD1 LINE L1 -201 6041 5910 2242 96 4 0 chr3 203657518 203657832 -14379326 - AluSx SINE Alu 0 315 1 3369 158 37 37 chr3 203657832 203658172 -14378986 - L1MD1 LINE L1 -332 5910 5571 2194 117 3 0 chr3 203658172 203658480 -14378678 + AluSx SINE Alu 3 311 -1 3369 158 37 37 chr3 203658480 203658755 -14378403 - L1MD1 LINE L1 -671 5571 5297 666 122 28 28 chr3 203658755 203658862 -14378296 - U6 snRNA snRNA 0 107 1 3369 158 37 37 chr3 203658862 203658909 -14378249 - L1MD1 LINE L1 -945 5297 5251 2100 124 0 0 chr3 203658909 203659208 -14377950 - AluSx SINE Alu -13 299 1 3369 158 37 37 chr3 203659208 203659361 -14377797 - L1MD1 LINE L1 -991 5251 5159 229 286 12 12 chr3 203659521 203659605 -14377553 + GA-rich Low_complexity Low_complexity 2 85 0 206 71 0 71 chr3 203660494 203660536 -14376622 + (GGAGAA)n Simple_repeat Simple_repeat 1 39 0 257 104 83 0 chr3 203660545 203660593 -14376565 - L1MD1 LINE L1 -974 5172 5121 * 818 177 36 76 chr3 203660588 203660749 -14376409 - L1MDa LINE L1 -5290 1250 1084 2237 99 3 10 chr3 203660749 203661053 -14376105 - AluSx SINE Alu -10 302 1 818 177 36 76 chr3 203661053 203661073 -14376085 - L1MDa LINE L1 -5456 1084 1065 2486 60 0 3 chr3 203661073 203661373 -14375785 - AluY SINE Alu -12 299 1 818 177 36 76 chr3 203661373 203661439 -14375719 - L1MDa LINE L1 -5475 1065 1012 2460 99 0 0 chr3 203661460 203661772 -14375386 - AluSx SINE Alu 0 312 1 3596 154 55 24 chr3 203661873 203662254 -14374904 - L1MB3 LINE L1 -3 6180 5767 1898 158 0 16 chr3 203662254 203662564 -14374594 - AluJb SINE Alu -7 305 1 3596 154 55 24 chr3 203662564 203662878 -14374280 - L1MB3 LINE L1 -416 5767 5464 658 168 18 0 chr3 203662882 203662995 -14374163 + FLAM_C SINE Alu 2 116 -27 652 171 8 8 chr3 203663027 203663148 -14374010 - L1MB3 LINE L1 -678 5443 5358 2215 248 62 72 chr3 203663158 203663757 -14373401 - L1MDa LINE L1 -5713 827 237 2617 52 0 3 chr3 203663757 203664066 -14373092 - AluY SINE Alu -3 308 1 2215 248 62 72 chr3 203664066 203664301 -14372857 - L1MDa LINE L1 -6303 237 1 1748 156 29 19 chr3 203664412 203664719 -14372439 + AluSx SINE Alu 1 310 -2 620 117 0 43 chr3 203664872 203665034 -14372124 + (TA)n Simple_repeat Simple_repeat 2 156 0 2354 84 7 0 chr3 203665111 203665410 -14371748 + AluSp SINE Alu 1 301 -12 2096 110 7 3 chr3 203665638 203665920 -14371238 - AluSx SINE Alu -18 294 12 264 305 54 42 chr3 203666100 203666359 -14370799 - L1MC4a LINE L1 -1865 5943 5682 2256 109 3 0 chr3 203666596 203666889 -14370269 - AluSp SINE Alu -18 295 2 279 315 31 8 chr3 203666900 203667027 -14370131 - MIR3 SINE MIR -46 162 33 270 0 0 0 chr3 203667304 203667334 -14369824 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 2351 72 0 0 chr3 203667334 203667611 -14369547 - AluSc SINE Alu -32 277 1 188 196 0 22 chr3 203667646 203667692 -14369466 - MIR SINE MIR -50 212 168 317 254 66 8 chr3 203669733 203669855 -14367303 + L1MCa LINE L1 1936 2064 -4362 2124 107 35 7 chr3 203669855 203670144 -14367014 - AluSx SINE Alu -15 297 1 2208 71 4 0 chr3 203670587 203670853 -14366305 + AluSp SINE Alu 35 301 -12 2454 201 22 11 chr3 203670883 203671478 -14365680 - L1MB4 LINE L1 -223 5957 5175 736 250 136 36 chr3 203671482 203671574 -14365584 - L1ME4a LINE L1 0 6121 6040 1994 138 0 7 chr3 203671574 203671870 -14365288 + AluSx SINE Alu 1 294 -18 736 250 136 36 chr3 203671870 203672249 -14364909 - L1ME4a LINE L1 -81 6040 5603 2062 147 0 0 chr3 203672655 203672961 -14364197 + AluSx SINE Alu 1 306 -6 21 0 0 0 chr3 203673403 203673424 -14363734 + AT_rich Low_complexity Low_complexity 1 21 0 243 61 0 0 chr3 203673478 203673511 -14363647 + (CA)n Simple_repeat Simple_repeat 1 33 0 2152 123 3 22 chr3 203673937 203674255 -14362903 + AluSx SINE Alu 1 312 0 2005 117 21 10 chr3 203674293 203674584 -14362574 + AluSx SINE Alu 1 294 -18 1992 47 4 35 chr3 203674739 203674993 -14362165 + AluY SINE Alu 66 311 0 1987 90 40 87 chr3 203675532 203675855 -14361303 + AluSx SINE Alu 1 308 -4 1536 101 0 23 chr3 203675856 203676122 -14361036 + L1MA4A LINE L1 5223 5482 -743 4357 145 19 25 chr3 203676310 203676589 -14360569 + L1MA4A LINE L1 5504 5783 -520 2255 82 23 20 chr3 203676589 203676895 -14360263 + AluSx SINE Alu 1 307 -5 4357 145 19 25 chr3 203676895 203677420 -14359738 + L1MA4A LINE L1 5783 6303 0 247 257 40 0 chr3 203677424 203677498 -14359660 + MIR SINE MIR 186 262 0 307 300 10 0 chr3 203677571 203677671 -14359487 - MIR SINE MIR -64 198 98 2093 147 3 6 chr3 203678389 203678703 -14358455 - AluSq SINE Alu 0 313 1 473 318 69 13 chr3 203678821 203679054 -14358104 + MIR SINE MIR 2 247 -15 183 161 0 0 chr3 203679228 203679259 -14357899 - MIR SINE MIR -113 149 119 2633 58 0 0 chr3 203679448 203679757 -14357401 + AluY SINE Alu 1 309 -2 302 293 78 24 chr3 203679812 203679979 -14357179 - MIR SINE MIR -38 224 49 371 263 70 13 chr3 203680626 203680782 -14356376 + L1ME4a LINE L1 5887 6051 -70 2355 45 42 3 chr3 203680792 203681080 -14356078 - AluY SINE Alu -12 299 1 255 135 64 128 chr3 203681114 203681255 -14355903 + L1ME4a LINE L1 5942 6073 -48 511 152 95 0 chr3 203681256 203681361 -14355797 - L1MB8 LINE L1 0 6178 6064 825 31 0 92 chr3 203682123 203682515 -14354643 + (TGG)n Simple_repeat Simple_repeat 2 357 0 852 31 0 78 chr3 203682526 203682719 -14354439 + (TGG)n Simple_repeat Simple_repeat 1 178 0 1141 194 117 12 chr3 203683767 203684014 -14353144 + MER39 LTR ERV1 1 273 -434 2381 102 3 0 chr3 203684147 203684452 -14352706 + AluSp SINE Alu 1 306 -7 228 135 0 0 chr3 203684534 203684571 -14352587 + (T)n Simple_repeat Simple_repeat 1 37 0 2180 115 24 0 chr3 203685002 203685298 -14351860 - AluSx SINE Alu -7 305 3 279 54 0 0 chr3 203685729 203685766 -14351392 + (TG)n Simple_repeat Simple_repeat 1 37 0 856 42 0 17 chr3 203686501 203686620 -14350538 + (TTTC)n Simple_repeat Simple_repeat 4 120 0 2064 125 0 4 chr3 203686625 203686906 -14350252 - AluSx SINE Alu -32 280 1 2735 207 62 25 chr3 203687768 203688449 -14348709 + MER39 LTR ERV1 1 706 -1 456 254 62 51 chr3 203688699 203688876 -14348282 + MIR SINE MIR 20 198 -64 2051 124 7 10 chr3 203689202 203689508 -14347650 + AluSq SINE Alu 1 305 -8 226 360 42 35 chr3 203689527 203689678 -14347480 + MIR SINE MIR 1 151 -65 1466 233 89 5 chr3 203689694 203690063 -14347095 + MLT1J2 LTR MaLR 33 432 -18 2471 63 3 0 chr3 203690562 203690863 -14346295 - AluY SINE Alu -7 304 3 903 137 0 22 chr3 203692821 203692960 -14344198 + AluJb SINE Alu 1 136 -176 2431 61 10 0 chr3 203693062 203693357 -14343801 - AluY SINE Alu -13 298 1 22 35 0 0 chr3 203693672 203693701 -14343457 + AT_rich Low_complexity Low_complexity 1 29 0 185 94 31 0 chr3 203694200 203694232 -14342926 + (TG)n Simple_repeat Simple_repeat 1 33 0 361 260 75 14 chr3 203694798 203694944 -14342214 + MIR SINE MIR 8 162 -100 1853 128 29 4 chr3 203694960 203695280 -14341878 - AluSx SINE Alu 0 328 2 195 286 133 29 chr3 203695842 203695947 -14341211 + MIR SINE MIR 30 145 -63 5976 81 15 0 chr3 203696018 203696799 -14340359 + L1PA10 LINE L1 5375 6167 -1 435 175 25 131 chr3 203696964 203697035 -14340123 + MIR SINE MIR 100 146 -116 2167 97 3 27 chr3 203697035 203697335 -14339823 + AluSg SINE Alu 1 293 -17 435 175 25 131 chr3 203697335 203697423 -14339735 + MIR SINE MIR 146 242 -20 199 259 35 17 chr3 203698194 203698252 -14338906 + MIR3 SINE MIR 111 169 -39 221 353 12 12 chr3 203698790 203698875 -14338283 - MIR SINE MIR -61 147 63 217 360 28 22 chr3 203699182 203699360 -14337798 + MIR SINE MIR 20 198 -64 271 325 48 48 chr3 203699492 203699658 -14337500 - MIR SINE MIR -71 191 26 2091 126 3 10 chr3 203700010 203700319 -14336839 + AluSx SINE Alu 1 307 -5 180 111 0 0 chr3 203701319 203701346 -14335812 + (A)n Simple_repeat Simple_repeat 1 27 0 292 233 39 85 chr3 203701833 203701962 -14335196 - MIR3 SINE MIR -11 197 75 2925 82 70 10 chr3 203702287 203702665 -14334493 + MLT2A1 LTR ERVL 1 408 -36 225 0 0 0 chr3 203702665 203702690 -14334468 + (TA)n Simple_repeat Simple_repeat 1 25 0 2925 82 70 10 chr3 203702690 203702728 -14334430 + MLT2A1 LTR ERVL 408 442 -2 3030 198 36 16 chr3 203704179 203704870 -14332288 + MER39 LTR ERV1 3 707 0 426 272 49 49 chr3 203705120 203705304 -14331854 + MIR SINE MIR 20 203 -59 252 363 15 14 chr3 203705638 203705785 -14331373 + MIR SINE MIR 1 147 -65 1343 233 76 6 chr3 203705811 203706155 -14331003 + MLT1J2 LTR MaLR 40 407 -43 200 226 298 0 chr3 203706278 203706362 -14330796 - L2 LINE L2 -6 3307 3199 186 43 0 0 chr3 203709677 203709700 -14327458 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 23 33 0 0 chr3 203709837 203709867 -14327291 + AT_rich Low_complexity Low_complexity 1 30 0 199 259 35 17 chr3 203710342 203710400 -14326758 + MIR3 SINE MIR 111 169 -39 221 353 12 12 chr3 203710944 203711029 -14326129 - MIR SINE MIR -61 147 63 27 29 0 0 chr3 203711304 203711338 -14325820 + AT_rich Low_complexity Low_complexity 1 34 0 431 284 80 44 chr3 203711567 203711792 -14325366 - MIR SINE MIR -9 253 21 2378 92 3 0 chr3 203711838 203712132 -14325026 - AluSp SINE Alu -18 295 1 241 279 29 71 chr3 203712982 203713122 -14324036 - MIR3 SINE MIR 0 208 75 1997 118 0 4 chr3 203713509 203713800 -14323358 - AluSc SINE Alu 0 328 39 22 0 0 0 chr3 203713803 203713825 -14323333 + AT_rich Low_complexity Low_complexity 1 22 0 1934 160 76 17 chr3 203715091 203715435 -14321723 + THE1B LTR MaLR 1 364 0 11444 91 31 17 chr3 203715435 203715820 -14321338 + THE1B-int LTR MaLR 1 379 -1201 2422 71 0 0 chr3 203715820 203716129 -14321029 - L1PA8 LINE L1 -8 6164 5856 11444 91 31 17 chr3 203716129 203716161 -14320997 + THE1B-int LTR MaLR 379 409 -1171 1802 117 0 0 chr3 203716161 203716418 -14320740 - AluSq SINE Alu -56 257 1 11444 91 31 17 chr3 203716418 203717556 -14319602 + THE1B-int LTR MaLR 409 1580 0 2027 157 76 15 chr3 203717556 203717899 -14319259 + THE1B LTR MaLR 1 364 0 2955 183 57 19 chr3 203717991 203718670 -14318488 + MER39 LTR ERV1 3 707 0 399 286 51 51 chr3 203718933 203719111 -14318047 + MIR SINE MIR 20 197 -65 281 373 34 8 chr3 203719495 203719613 -14317545 + MIR SINE MIR 23 143 -119 1454 225 72 9 chr3 203719644 203719991 -14317167 + MLT1J2 LTR MaLR 39 407 -43 970 173 243 9 chr3 203720096 203720345 -14316813 - AluSg1 SINE Alu 0 302 1 195 279 109 60 chr3 203720437 203720620 -14316538 - L2 LINE L2 -786 2528 2337 1879 112 4 0 chr3 203720724 203720992 -14316166 + AluSg SINE Alu 1 269 -41 207 0 0 0 chr3 203721002 203721025 -14316133 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1122 120 11 11 chr3 203722372 203722547 -14314611 + L1PA10 LINE L1 5994 6168 0 222 304 0 50 chr3 203723258 203723439 -14313719 + (ATGGTG)n Simple_repeat Simple_repeat 3 174 0 1492 154 0 114 chr3 203723966 203724298 -14312860 - AluSx SINE Alu -8 294 1 2263 99 3 0 chr3 203724619 203724922 -14312236 + AluSp SINE Alu 1 304 -9 522 103 0 0 chr3 203725397 203725484 -14311674 + (TC)n Simple_repeat Simple_repeat 2 88 0 192 40 0 0 chr3 203725484 203725509 -14311649 + (CA)n Simple_repeat Simple_repeat 1 25 0 491 243 84 37 chr3 203726283 203726495 -14310663 + MIR SINE MIR 1 213 -49 214 326 108 39 chr3 203726987 203727116 -14310042 + MIR3 SINE MIR 8 145 -63 526 213 11 92 chr3 203727281 203727378 -14309780 + MIR SINE MIR 103 181 -81 2001 110 3 29 chr3 203727378 203727687 -14309471 + AluSq SINE Alu 1 301 -12 526 213 11 92 chr3 203727687 203727763 -14309395 + MIR SINE MIR 181 262 0 479 151 11 0 chr3 203727774 203727867 -14309291 + CT-rich Low_complexity Low_complexity 6 99 0 355 309 71 65 chr3 203728175 203728512 -14308646 - L1ME4a LINE L1 -17 6104 5766 251 301 14 96 chr3 203729243 203729389 -14307769 - MIR3 SINE MIR -61 147 14 284 115 54 23 chr3 203729461 203729591 -14307567 + (TA)n Simple_repeat Simple_repeat 2 135 0 744 179 0 0 chr3 203729598 203729715 -14307443 - FLAM_C SINE Alu -25 118 2 2147 127 3 0 chr3 203729941 203730249 -14306909 + AluSp SINE Alu 1 309 -4 252 357 36 21 chr3 203730254 203730394 -14306764 + MIR SINE MIR 28 169 -93 201 164 0 82 chr3 203730625 203730698 -14306460 + (CATATA)n Simple_repeat Simple_repeat 1 67 0 517 151 23 0 chr3 203731529 203731615 -14305543 + Tigger7 DNA MER2_type 2398 2485 -2 2049 175 77 18 chr3 203731756 203732145 -14305013 + MSTB LTR MaLR 1 412 -14 1740 62 13 0 chr3 203732173 203732398 -14304760 - AluY SINE Alu -14 297 70 1123 200 106 69 chr3 203732554 203732904 -14304254 - MLT1A1 LTR MaLR -2 363 1 467 274 22 7 chr3 203732933 203733068 -14304090 - MER5A DNA MER1_type -51 138 2 1918 122 27 14 chr3 203733248 203733406 -14303752 - AluSx SINE Alu -13 299 134 2306 92 3 0 chr3 203733406 203733710 -14303448 - AluSp SINE Alu -8 305 1 1918 122 27 14 chr3 203733710 203733846 -14303312 - AluSx SINE Alu -178 134 1 1179 346 21 17 chr3 203733919 203734500 -14302658 - HERV16 LTR ERVL -1480 4174 3592 403 189 22 22 chr3 203734505 203734595 -14302563 + MLT1E LTR MaLR 1 90 -503 1112 258 31 59 chr3 203734638 203735000 -14302158 - HERV16 LTR ERVL -4273 723 371 1979 136 3 0 chr3 203735000 203735308 -14301850 - AluSq SINE Alu -4 309 1 1112 258 31 59 chr3 203735308 203735332 -14301826 - HERV16 LTR ERVL -4625 371 348 2365 73 0 6 chr3 203735507 203735820 -14301338 - AluY SINE Alu 0 311 1 2433 59 0 0 chr3 203735839 203736142 -14301016 - AluY SINE Alu -8 303 1 812 213 12 6 chr3 203736404 203736568 -14300590 - FRAM SINE Alu -1 165 1 2132 118 0 0 chr3 203736966 203737263 -14299895 + AluSc SINE Alu 3 299 -10 1759 139 10 7 chr3 203737484 203737772 -14299386 - AluJb SINE Alu -23 289 1 252 331 45 45 chr3 203737801 203737834 -14299324 - MIR SINE MIR -13 249 217 2035 117 0 13 chr3 203737834 203738133 -14299025 - AluSx SINE Alu -12 300 6 252 331 45 45 chr3 203738133 203738232 -14298926 - MIR SINE MIR -44 218 117 274 88 62 62 chr3 203738447 203738607 -14298551 + (TTATA)n Simple_repeat Simple_repeat 5 164 0 27 29 0 0 chr3 203738619 203738653 -14298505 + AT_rich Low_complexity Low_complexity 1 34 0 547 255 64 29 chr3 203738862 203739066 -14298092 - MER112 DNA MER1_type 0 260 50 198 264 35 69 chr3 203739274 203739361 -14297797 + MIR3 SINE MIR 104 187 -21 181 192 269 0 chr3 203740554 203740632 -14296526 + MIR SINE MIR 90 188 -74 243 317 12 6 chr3 203740886 203740983 -14296175 + GA-rich Low_complexity Low_complexity 1 97 0 1793 109 0 4 chr3 203742510 203742775 -14294383 - AluSx SINE Alu -48 264 1 1259 201 232 37 chr3 203742943 203743431 -14293727 - LTR50 LTR ERVL -2 793 211 279 79 0 0 chr3 203744451 203744489 -14292669 + (TATG)n Simple_repeat Simple_repeat 3 40 0 443 308 110 4 chr3 203744583 203744820 -14292338 - L2 LINE L2 -105 3167 2906 225 65 0 0 chr3 203745529 203745560 -14291598 + (TG)n Simple_repeat Simple_repeat 1 31 0 1919 172 51 20 chr3 203745631 203745916 -14291242 + MLT1A1 LTR MaLR 1 301 -64 2114 121 0 0 chr3 203745916 203746223 -14290935 - AluSx SINE Alu -5 307 1 1919 172 51 20 chr3 203746223 203746291 -14290867 + MLT1A1 LTR MaLR 301 365 0 281 264 14 0 chr3 203747261 203747333 -14289825 - MER103 DNA DNA -83 83 11 520 296 62 14 chr3 203747353 203747634 -14289524 - MLT1J2 LTR MaLR -130 381 65 245 171 0 0 chr3 203747700 203747741 -14289417 - MIR SINE MIR -138 70 30 1056 152 81 20 chr3 203747773 203747971 -14289187 - MER6B DNA MER2_type 0 210 1 190 255 21 0 chr3 203747977 203748024 -14289134 - L2 LINE L2 -9 3263 3216 261 0 0 0 chr3 203748346 203748375 -14288783 + (TA)n Simple_repeat Simple_repeat 1 29 0 2107 115 10 0 chr3 203748673 203748978 -14288180 + AluSq SINE Alu 6 313 0 361 245 11 21 chr3 203748999 203749093 -14288065 + MER89 LTR ERV1 447 539 -20 5382 133 45 13 chr3 203749209 203750196 -14286962 + L1PA16 LINE L1 5155 6166 0 327 343 142 10 chr3 203750207 203750411 -14286747 + L1MC/D LINE L1 5070 5300 -846 1198 169 40 11 chr3 203750417 203750604 -14286554 + L1MA4 LINE L1 6017 6216 -84 2041 129 0 0 chr3 203750604 203750898 -14286260 - AluSx SINE Alu -18 294 1 1198 169 40 11 chr3 203750898 203750982 -14286176 + L1MA4 LINE L1 6216 6296 -4 720 283 76 27 chr3 203751011 203751378 -14285780 + L1MC/D LINE L1 5315 5699 -2109 751 197 101 64 chr3 203751382 203751410 -14285748 - L1MC/D LINE L1 -547 5695 5669 2318 91 0 0 chr3 203751410 203751717 -14285441 - AluSx SINE Alu -5 307 1 751 197 101 64 chr3 203751717 203751891 -14285267 - L1MC/D LINE L1 -573 5669 5482 1736 171 0 10 chr3 203751891 203752196 -14284962 - AluSx SINE Alu -10 302 1 751 197 101 64 chr3 203752196 203752210 -14284948 - L1MC/D LINE L1 -760 5482 5470 445 123 0 114 chr3 203752262 203752310 -14284848 - L1MC1 LINE L1 -179 6154 6125 1885 151 6 3 chr3 203752310 203752622 -14284536 - AluSq SINE Alu 0 313 1 445 123 0 114 chr3 203752622 203752687 -14284471 - L1MC1 LINE L1 -208 6125 6054 1191 217 22 0 chr3 203752689 203753098 -14284060 - L1MC/D LINE L1 -743 5403 5068 317 222 28 0 chr3 203753100 203753172 -14283986 - MLT1D LTR MaLR 0 505 432 2280 90 7 0 chr3 203753946 203754256 -14282902 + AluSp SINE Alu 1 312 -1 2124 98 0 7 chr3 203754867 203755163 -14281995 - AluSx SINE Alu -18 294 1 302 269 149 35 chr3 203755253 203755394 -14281764 + MIR SINE MIR 9 165 -97 445 184 68 110 chr3 203755424 203755531 -14281627 - L2 LINE L2 0 3313 3214 2031 128 10 0 chr3 203755531 203755828 -14281330 - AluSq SINE Alu -13 300 1 445 184 68 110 chr3 203755828 203755883 -14281275 - L2 LINE L2 -99 3214 3158 265 307 0 13 chr3 203757876 203757951 -14279207 - L2 LINE L2 -1 3271 3198 2190 115 0 3 chr3 203758035 203758348 -14278810 + AluSx SINE Alu 1 312 0 1826 92 4 0 chr3 203758863 203759103 -14278055 - AluSc SINE Alu -68 241 1 490 107 0 0 chr3 203759112 203759187 -14277971 + AluSp/q SINE Alu 226 300 -13 1555 169 7 7 chr3 203759211 203759483 -14277675 - AluJo SINE Alu -23 289 18 277 271 12 0 chr3 203759700 203759866 -14277292 + (TG)n Simple_repeat Simple_repeat 2 169 0 2262 109 0 0 chr3 203760016 203760328 -14276830 - AluSq SINE Alu -1 312 1 281 254 142 15 chr3 203760670 203760804 -14276354 + MIR SINE MIR 100 250 -12 296 309 24 12 chr3 203760820 203760904 -14276254 + MIR3 SINE MIR 119 203 -5 1764 138 50 7 chr3 203760908 203761191 -14275967 - AluSx SINE Alu -17 295 1 306 321 28 0 chr3 203761628 203761737 -14275421 + MIR SINE MIR 32 143 -65 389 224 24 0 chr3 203761746 203761831 -14275327 - MIR SINE MIR -4 258 172 2100 110 0 3 chr3 203762547 203762847 -14274311 + AluSx SINE Alu 1 299 -13 1032 53 0 0 chr3 203762856 203762987 -14274171 + (GGAA)n Simple_repeat Simple_repeat 4 134 0 214 136 182 0 chr3 203763058 203763102 -14274056 - MIR SINE MIR -111 151 100 2097 115 0 10 chr3 203764647 203764952 -14272206 + AluSx SINE Alu 1 302 -10 487 282 69 56 chr3 203764952 203765257 -14271901 + L1ME LINE L1 5418 5726 -395 24 32 0 0 chr3 203765273 203765304 -14271854 + AT_rich Low_complexity Low_complexity 1 31 0 209 136 34 34 chr3 203765559 203765618 -14271540 + (TA)n Simple_repeat Simple_repeat 1 59 0 262 203 13 13 chr3 203766253 203766332 -14270826 + CT-rich Low_complexity Low_complexity 4 82 0 195 340 24 77 chr3 203766445 203766495 -14270663 - L2 LINE L2 -122 3150 3099 1842 136 206 17 chr3 203766495 203766682 -14270476 - MSTA LTR MaLR 0 428 278 249 33 0 0 chr3 203766682 203766712 -14270446 + (GA)n Simple_repeat Simple_repeat 1 30 0 1842 136 206 17 chr3 203766712 203766884 -14270274 - MSTA LTR MaLR -150 278 1 195 340 24 77 chr3 203766884 203767042 -14270116 - L2 LINE L2 -173 3099 2953 195 129 0 0 chr3 203767107 203767138 -14270020 + (TC)n Simple_repeat Simple_repeat 2 32 0 333 318 9 0 chr3 203767203 203767310 -14269848 + GA-rich Low_complexity Low_complexity 1 108 0 193 376 129 16 chr3 203767393 203767587 -14269571 - L2 LINE L2 -30 3242 3027 224 335 105 20 chr3 203768414 203768566 -14268592 - L2 LINE L2 -182 3090 2926 279 79 0 0 chr3 203769474 203769512 -14267646 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 469 246 38 25 chr3 203769632 203769804 -14267354 - MIR SINE MIR -18 190 21 2016 129 3 0 chr3 203770120 203770414 -14266744 - AluSx SINE Alu -17 295 1 1729 127 4 0 chr3 203771102 203771362 -14265796 - AluSg SINE Alu -1 309 49 305 246 33 142 chr3 203771434 203771674 -14265484 - MLT1K LTR MaLR 0 588 375 353 284 63 8 chr3 203771800 203771927 -14265231 - MLT1K LTR MaLR -287 301 168 253 260 52 13 chr3 203771964 203772041 -14265117 - MLT1K LTR MaLR -508 80 1 2043 207 55 116 chr3 203772339 203772631 -14264527 - L1MDa LINE L1 -3608 2932 2624 1652 174 33 0 chr3 203772631 203772930 -14264228 - AluSg SINE Alu -1 309 1 2043 207 55 116 chr3 203772930 203774085 -14263073 - L1MDa LINE L1 -3916 2624 1581 759 159 0 8 chr3 203774090 203774216 -14262942 - FLAM_C SINE Alu -9 134 10 697 93 21 0 chr3 203774220 203774317 -14262841 + MSTD LTR MaLR 298 396 0 225 0 0 0 chr3 203774471 203774496 -14262662 + (GA)n Simple_repeat Simple_repeat 2 26 0 1910 131 40 0 chr3 203774658 203774955 -14262203 + AluSx SINE Alu 1 309 -3 21 36 0 0 chr3 203775241 203775269 -14261889 + AT_rich Low_complexity Low_complexity 1 28 0 561 310 38 5 chr3 203775284 203775468 -14261690 - MIR SINE MIR -54 208 19 2024 110 0 0 chr3 203775829 203776144 -14261014 + AluSx SINE Alu 1 315 0 267 273 36 43 chr3 203776145 203776319 -14260839 + L1P LINE L1 3962 4134 -2012 392 284 20 20 chr3 203776428 203776530 -14260628 + L1MC4 LINE L1 6609 6710 -1332 1918 132 4 0 chr3 203777420 203777701 -14259457 + AluSx SINE Alu 4 285 -27 239 264 38 19 chr3 203777718 203777824 -14259334 + L1M4 LINE L1 4761 4868 -1278 1620 15 0 0 chr3 203777905 203778242 -14258916 + (TCTCCC)n Simple_repeat Simple_repeat 1 337 0 5843 69 14 73 chr3 203778242 203780265 -14256893 + SVA Other Other 71 1386 0 5008 132 28 38 chr3 203780265 203781147 -14256011 - LTR5 LTR ERVK -92 877 1 1069 122 0 0 chr3 203781149 203781305 -14255853 + AluSq SINE Alu 144 299 -14 324 0 0 0 chr3 203781842 203781878 -14255280 + (TG)n Simple_repeat Simple_repeat 2 37 0 189 0 0 0 chr3 203781966 203781987 -14255171 + (A)n Simple_repeat Simple_repeat 1 21 0 315 167 0 0 chr3 203781997 203782051 -14255107 + U6 snRNA snRNA 1 54 -53 282 73 0 0 chr3 203782121 203782162 -14254996 + (A)n Simple_repeat Simple_repeat 1 41 0 2062 76 59 3 chr3 203782695 203782985 -14254173 - AluY SINE Alu -5 306 1 2064 107 0 10 chr3 203783012 203783312 -14253846 - AluY SINE Alu -10 301 5 303 232 170 18 chr3 203783496 203783608 -14253550 + L1ME4a LINE L1 5679 5807 -2001 402 230 71 120 chr3 203783659 203783942 -14253216 + L1ME4a LINE L1 5850 6118 -3 2276 82 10 0 chr3 203784461 203784753 -14252405 + AluSg SINE Alu 1 295 -15 1042 260 102 60 chr3 203784906 203785032 -14252126 + L1MC4a LINE L1 5371 5490 -2318 1886 159 3 0 chr3 203785032 203785333 -14251825 + AluJb SINE Alu 1 302 -10 1042 260 102 60 chr3 203785333 203785578 -14251580 + L1MC4a LINE L1 5490 5723 -2085 2213 77 0 26 chr3 203785578 203785913 -14251245 + AluY SINE Alu 1 327 0 1042 260 102 60 chr3 203785913 203786103 -14251055 + L1MC4a LINE L1 5723 5960 -1848 1176 131 4 102 chr3 203786196 203786250 -14250908 - MLT1B LTR MaLR -5 385 327 8236 43 2 0 chr3 203786250 203787217 -14249941 + LTR5 LTR ERVK 1 969 0 1176 131 4 102 chr3 203787217 203787406 -14249752 - MLT1B LTR MaLR -63 327 166 1926 122 0 3 chr3 203787407 203787693 -14249465 - AluSx SINE Alu -14 298 14 2179 96 7 0 chr3 203787920 203788212 -14248946 - AluSq SINE Alu -19 294 1 1607 129 50 0 chr3 203788247 203788488 -14248670 + MER9 LTR ERVK 1 253 -258 497 271 159 48 chr3 203788821 203789193 -14247965 + LTR16A LTR ERVL 14 426 -24 183 262 0 0 chr3 203789509 203789551 -14247607 + L2 LINE L2 2686 2727 -587 465 283 200 5 chr3 203789805 203790010 -14247148 - LTR16A LTR ERVL -7 443 199 349 151 82 0 chr3 203790012 203790085 -14247073 - MSTB2 LTR MaLR 0 457 379 5032 81 84 12 chr3 203790098 203790905 -14246253 + SVA Other Other 1 865 -521 2039 122 0 0 chr3 203791305 203791592 -14245566 - AluSx SINE Alu -25 287 1 422 185 25 34 chr3 203791593 203791712 -14245446 - L1MC3 LINE L1 -6 7779 7662 289 273 59 78 chr3 203791860 203792058 -14245100 + L1MEd LINE L1 650 843 -5276 931 118 0 22 chr3 203792058 203792193 -14244965 + FLAM_C SINE Alu 2 133 0 289 273 59 78 chr3 203792193 203792250 -14244908 + L1MEd LINE L1 843 900 -5219 1953 101 4 4 chr3 203792259 203792536 -14244622 + AluSx SINE Alu 1 277 -35 195 42 0 0 chr3 203792543 203792567 -14244591 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 1443 101 10 0 chr3 203793015 203793224 -14243934 - AluSq SINE Alu -98 215 5 287 323 32 38 chr3 203793396 203793553 -14243605 + MIR3 SINE MIR 6 161 -47 381 292 56 25 chr3 203793553 203793714 -14243444 - MER5B DNA MER1_type -1 177 12 476 267 31 27 chr3 203795548 203795729 -14241429 - MIR SINE MIR -47 215 36 434 286 95 12 chr3 203796258 203796426 -14240732 - MIR SINE MIR -73 189 8 2126 85 3 0 chr3 203796712 203797038 -14240120 - AluSp SINE Alu 0 327 1 2271 89 0 10 chr3 203797352 203797665 -14239493 + AluSg SINE Alu 1 310 0 182 346 148 10 chr3 203797780 203797881 -14239277 + MIR SINE MIR 31 145 -117 2296 90 0 0 chr3 203798162 203798463 -14238695 + AluSx SINE Alu 3 303 -9 435 299 164 19 chr3 203799103 203799317 -14237841 + MIR SINE MIR 2 246 -16 231 371 0 21 chr3 203799478 203799575 -14237583 - L2 LINE L2 -219 3053 2959 278 264 138 30 chr3 203799591 203799887 -14237271 + L1ME4a LINE L1 5672 5999 -122 300 233 0 0 chr3 203799912 203799972 -14237186 + HAL1b LINE L1 1283 1342 -6 289 167 0 0 chr3 203799985 203800039 -14237119 - L1MB4 LINE L1 0 6180 6127 236 265 44 0 chr3 203800756 203800824 -14236334 - L2 LINE L2 0 3272 3202 258 294 63 28 chr3 203800849 203800992 -14236166 - MIR SINE MIR -25 237 90 1828 269 101 46 chr3 203801104 203802390 -14234768 + L1ME LINE L1 306 1623 -4759 2058 123 13 0 chr3 203802390 203802690 -14234468 + AluSx SINE Alu 1 304 -8 1828 269 101 46 chr3 203802690 203802734 -14234424 + L1ME LINE L1 1623 1663 -4719 688 27 45 18 chr3 203802736 203802847 -14234311 + (GAAA)n Simple_repeat Simple_repeat 3 116 0 352 205 26 103 chr3 203802849 203802966 -14234192 + L1ME LINE L1 1543 1650 -4734 2612 13 0 13 chr3 203803499 203803805 -14233353 - AluYa5 SINE Alu -8 303 2 16434 77 5 5 chr3 203804390 203807387 -14229771 + L1PA7 LINE L1 3137 6150 -4 1086 157 0 0 chr3 203807392 203807564 -14229594 + AluSg/x SINE Alu 127 298 -12 315 286 146 29 chr3 203807658 203808042 -14229116 - L2 LINE L2 -229 3043 2612 3977 176 36 125 chr3 203808130 203808442 -14228716 + Charlie1 DNA MER1_type 45 383 -2378 1645 176 0 17 chr3 203808442 203808737 -14228421 - AluJb SINE Alu -18 294 5 3977 176 36 125 chr3 203808737 203809221 -14227937 + Charlie1 DNA MER1_type 383 908 -1853 1773 204 46 32 chr3 203809221 203809682 -14227476 + MLT1C LTR MaLR 1 467 0 3977 176 36 125 chr3 203809682 203810240 -14226918 + Charlie1 DNA MER1_type 908 2590 -171 38 0 0 0 chr3 203810291 203810329 -14226829 + AT_rich Low_complexity Low_complexity 1 38 0 557 218 35 0 chr3 203810840 203810982 -14226176 + Charlie1 DNA MER1_type 2614 2760 -1 1429 171 19 59 chr3 203811003 203811324 -14225834 + AluJo SINE Alu 1 308 -4 444 347 107 20 chr3 203811408 203811800 -14225358 - L2 LINE L2 -927 2387 1962 1007 138 54 0 chr3 203811926 203812093 -14225065 - AluSx SINE Alu -10 302 127 243 171 40 0 chr3 203812100 203812176 -14224982 + (TA)n Simple_repeat Simple_repeat 1 79 0 874 110 16 0 chr3 203812178 203812305 -14224853 - AluSx SINE Alu -183 129 1 2224 89 0 10 chr3 203812650 203812953 -14224205 + AluSc SINE Alu 1 300 -9 2266 182 36 70 chr3 203813215 203813797 -14223361 - LTR6A LTR ERV1 0 564 3 256 169 0 31 chr3 203813797 203813862 -14223296 - HERVS71 LTR ERV1 -5 8973 8911 243 358 0 0 chr3 203814345 203814440 -14222718 - L2 LINE L2 -534 2780 2686 497 271 159 48 chr3 203814756 203815128 -14222030 - LTR16A LTR ERVL -24 426 14 435 290 6 12 chr3 203815461 203815623 -14221535 - MER9 LTR ERVK -258 253 93 399 183 0 61 chr3 203815865 203815980 -14221178 + L1PA10 LINE L1 6061 6168 0 242 295 26 0 chr3 203815986 203816064 -14221094 + MIR SINE MIR 106 185 -77 2493 280 92 82 chr3 203816071 203817182 -14219976 - L2 LINE L2 -4 3309 2082 791 78 0 0 chr3 203817182 203817312 -14219846 + AluSg/x SINE Alu 186 315 0 2493 280 92 82 chr3 203817312 203817623 -14219535 - L2 LINE L2 -1231 2082 1776 1050 144 33 6 chr3 203817634 203817814 -14219344 + MSTB1 LTR MaLR 248 432 0 1279 219 4 0 chr3 203817815 203818048 -14219110 + MLT1A1 LTR MaLR 132 365 0 602 236 62 0 chr3 203818053 203818197 -14218961 - L2 LINE L2 -1876 1438 1286 223 327 39 39 chr3 203818200 203818304 -14218854 - MER5B DNA MER1_type -3 175 72 2893 161 20 11 chr3 203819215 203819747 -14217411 + LTR27 LTR ERV1 7 1252 -141 429 309 9 0 chr3 203819860 203819970 -14217188 - MIR3 SINE MIR -27 181 71 1683 135 3 75 chr3 203820508 203820842 -14216316 + AluJb SINE Alu 1 310 -2 4975 96 0 18 chr3 203821408 203822135 -14215023 + SVA Other Other 673 1386 0 4686 142 28 43 chr3 203822129 203823019 -14214139 - LTR5 LTR ERVK -92 877 1 * 1054 108 0 0 chr3 203823029 203823177 -14213981 + AluSq SINE Alu 152 299 -14 324 0 0 0 chr3 203823714 203823750 -14213408 + (TG)n Simple_repeat Simple_repeat 2 37 0 186 317 0 0 chr3 203824424 203824484 -14212674 - MIR SINE MIR -68 140 81 408 225 54 27 chr3 203824507 203824618 -14212540 + MER63 DNA MER1_type 44 748 -314 195 42 0 0 chr3 203825018 203825042 -14212116 + (TG)n Simple_repeat Simple_repeat 2 25 0 1147 44 0 0 chr3 203825947 203826084 -14211074 + AluSp/q SINE Alu 156 292 -21 304 280 136 0 chr3 203826224 203826349 -14210809 - L1ME4a LINE L1 -16 6105 5964 391 264 36 129 chr3 203826398 203826784 -14210374 - L1ME4a LINE L1 -271 5850 5501 19459 85 10 2 chr3 203827271 203829966 -14207192 - L1P LINE L1 -1255 4891 2177 1963 121 7 26 chr3 203830318 203830624 -14206534 + AluSx SINE Alu 1 300 -12 28 29 0 0 chr3 203830794 203830829 -14206329 + AT_rich Low_complexity Low_complexity 1 35 0 402 212 191 37 chr3 203832074 203832263 -14204895 - MIR SINE MIR -14 248 31 2075 99 0 3 chr3 203832597 203832924 -14204234 - AluSx SINE Alu 0 326 1 232 178 22 0 chr3 203833048 203833093 -14204065 + HAL1b LINE L1 999 1044 -304 1539 143 35 0 chr3 203833093 203833351 -14203807 - AluSg SINE Alu -3 307 41 180 295 63 32 chr3 203833775 203833870 -14203288 - MIR3 SINE MIR -7 201 104 280 297 243 0 chr3 203834240 203834425 -14202733 + MIR SINE MIR 31 260 -2 2836 207 60 59 chr3 203834443 203835125 -14202033 - L1ME1 LINE L1 -6 6160 5473 2210 103 0 3 chr3 203835125 203835437 -14201721 - AluSx SINE Alu -1 311 1 2836 207 60 59 chr3 203835437 203835710 -14201448 - L1ME1 LINE L1 -693 5473 5202 292 344 80 12 chr3 203835775 203835938 -14201220 - L2 LINE L2 -181 3091 2918 200 217 101 43 chr3 203835974 203836043 -14201115 + MIR SINE MIR 15 87 -175 2613 247 108 10 chr3 203836046 203836289 -14200869 - L1MD2 LINE L1 0 6359 6141 2061 114 0 29 chr3 203836289 203836605 -14200553 - AluY SINE Alu -2 309 3 2613 247 108 10 chr3 203836605 203837179 -14199979 - L1MD2 LINE L1 -218 6141 5462 1949 104 0 30 chr3 203837181 203837478 -14199680 - AluSq SINE Alu -21 292 5 436 187 24 102 chr3 203837633 203837644 -14199514 - L1MC5 LINE L1 -243 7718 7708 1840 109 53 11 chr3 203837644 203837928 -14199230 + AluSg SINE Alu 1 296 -14 436 187 24 102 chr3 203837928 203838082 -14199076 - L1MC5 LINE L1 -253 7708 7566 303 207 66 91 chr3 203838063 203838184 -14198974 - L1MC5 LINE L1 -329 7632 7515 * 2148 107 3 3 chr3 203838196 203838505 -14198653 + AluSc SINE Alu 1 309 0 2027 122 0 0 chr3 203838539 203838826 -14198332 + AluSx SINE Alu 9 295 -17 1074 135 14 19 chr3 203840163 203840370 -14196788 - AluSq SINE Alu -107 206 1 884 174 0 0 chr3 203840456 203840611 -14196547 - FRAM SINE Alu -24 152 1 679 210 85 5 chr3 203840613 203840813 -14196345 - L1MC5 LINE L1 -37 7924 7709 321 287 56 37 chr3 203840849 203840957 -14196201 + L1ME4a LINE L1 5813 5922 -199 207 232 0 0 chr3 203840965 203841021 -14196137 + GA-rich Low_complexity Low_complexity 3 58 0 225 263 177 20 chr3 203841024 203841222 -14195936 + L1ME LINE L1 5571 5799 -322 1416 239 75 104 chr3 203841381 203842516 -14194642 - L1MDb LINE L1 -4452 1628 565 189 0 0 0 chr3 203842516 203842537 -14194621 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1416 239 75 104 chr3 203842537 203842649 -14194509 - L1MDb LINE L1 -5515 565 451 246 143 0 100 chr3 203842795 203842865 -14194293 - L1MDb LINE L1 -5693 377 315 1017 226 68 0 chr3 203843350 203843571 -14193587 + MIR SINE MIR 11 246 -16 370 321 70 19 chr3 203843867 203844082 -14193076 + L2 LINE L2 2666 2891 -423 434 310 107 11 chr3 203844542 203844729 -14192429 + MIR SINE MIR 38 242 -20 272 318 87 24 chr3 203844848 203844974 -14192184 - L2 LINE L2 -559 2755 2622 1611 161 40 62 chr3 203845070 203845442 -14191716 + THE1B LTR MaLR 1 364 0 201 280 0 0 chr3 203845483 203845533 -14191625 - MIR SINE MIR -95 167 118 990 106 0 14 chr3 203845643 203845785 -14191373 + AluY SINE Alu 1 140 -171 1857 70 4 23 chr3 203845785 203846042 -14191116 + AluY SINE Alu 1 252 -59 1879 188 5 37 chr3 203846512 203846669 -14190489 + MLT1A1 LTR MaLR 1 161 -204 2030 125 0 13 chr3 203846669 203846998 -14190160 + AluSq SINE Alu 1 313 0 1879 188 5 37 chr3 203846998 203847217 -14189941 + MLT1A1 LTR MaLR 161 365 0 495 0 0 0 chr3 203847635 203847690 -14189468 + (TA)n Simple_repeat Simple_repeat 1 55 0 944 189 40 0 chr3 203847728 203847903 -14189255 + MSTC LTR MaLR 196 377 -51 330 294 82 14 chr3 203848744 203848890 -14188268 - L1ME4a LINE L1 -2 6119 5964 236 195 65 52 chr3 203848902 203848979 -14188179 - L1ME4a LINE L1 -199 5922 5845 919 239 84 17 chr3 203849089 203849256 -14187902 + MIR SINE MIR 6 195 -67 2067 115 0 7 chr3 203849256 203849552 -14187606 + AluSx SINE Alu 1 294 -18 919 239 84 17 chr3 203849552 203849623 -14187535 + MIR SINE MIR 195 260 -2 260 254 0 0 chr3 203849624 203849687 -14187471 - L1ME4a LINE L1 -2014 5794 5732 844 96 16 8 chr3 203849691 203849816 -14187342 + AluSq/x SINE Alu 17 142 -170 454 278 126 0 chr3 203849981 203850132 -14187026 + MIR SINE MIR 81 250 -12 2128 114 0 0 chr3 203850327 203850633 -14186525 + AluSx SINE Alu 1 306 -6 489 273 45 26 chr3 203850739 203850949 -14186209 + MIR SINE MIR 11 222 -40 2100 118 7 0 chr3 203851658 203851964 -14185194 + AluSg SINE Alu 1 308 -2 361 56 0 0 chr3 203852459 203852513 -14184645 - LTR6B LTR ERV1 -175 383 330 261 298 106 0 chr3 203852763 203852857 -14184301 - MIR SINE MIR -122 140 37 1631 116 0 0 chr3 203852915 203853140 -14184018 + AluSx SINE Alu 3 227 -85 2307 67 3 3 chr3 203853140 203853439 -14183719 - LTR6B LTR ERV1 -2 556 258 388 342 38 6 chr3 203853927 203854085 -14183073 - MIR SINE MIR -12 250 88 1112 120 0 0 chr3 203854087 203854245 -14182913 - AluSq SINE Alu -153 160 3 297 364 83 39 chr3 203854286 203854624 -14182534 - L2 LINE L2 -89 3183 2831 429 253 62 82 chr3 203854628 203854685 -14182473 - MIR SINE MIR -57 205 148 2263 91 7 0 chr3 203854685 203854992 -14182166 - AluSg SINE Alu -1 309 1 429 253 62 82 chr3 203854992 203855128 -14182030 - MIR SINE MIR -114 148 16 549 199 66 76 chr3 203856035 203856232 -14180926 - MLT1J LTR MaLR -246 189 5 1531 164 45 10 chr3 203856281 203856573 -14180585 + AluJo SINE Alu 1 302 -10 529 268 174 31 chr3 203856574 203856925 -14180233 + HAL1b LINE L1 462 862 -486 2292 75 7 16 chr3 203856950 203857257 -14179901 + AluY SINE Alu 1 304 -7 1957 95 20 24 chr3 203857270 203857564 -14179594 + AluSx SINE Alu 1 293 -19 499 286 46 51 chr3 203857795 203857880 -14179278 + MIR SINE MIR 37 121 -141 2340 81 10 0 chr3 203857880 203858188 -14178970 - AluSx SINE Alu -1 311 1 499 286 46 51 chr3 203858188 203858319 -14178839 + MIR SINE MIR 121 252 -10 310 255 85 0 chr3 203859149 203859243 -14177915 + L2 LINE L2 3212 3313 0 305 343 33 6 chr3 203859267 203859390 -14177768 + MIR SINE MIR 62 196 -66 2019 148 0 0 chr3 203859390 203859700 -14177458 + AluSx SINE Alu 1 310 -2 305 343 33 6 chr3 203859700 203859757 -14177401 + MIR SINE MIR 196 250 -12 251 294 54 11 chr3 203859936 203860028 -14177130 + MIR3 SINE MIR 70 165 -43 566 229 14 21 chr3 203861526 203861666 -14175492 + L1MB7 LINE L1 6044 6182 -2 272 302 49 121 chr3 203862022 203862287 -14174871 + L2 LINE L2 3027 3272 0 272 264 42 0 chr3 203862448 203862520 -14174638 - MIR SINE MIR -72 190 116 2216 102 0 0 chr3 203862784 203863078 -14174080 + AluSq SINE Alu 1 294 -19 242 244 0 77 chr3 203863406 203863484 -14173674 - L2 LINE L2 0 3272 3201 1970 123 0 10 chr3 203863570 203863872 -14173286 + AluSx SINE Alu 1 299 -13 404 223 259 0 chr3 203863889 203864001 -14173157 + MIR SINE MIR 3 143 -119 716 267 26 51 chr3 203864399 203864751 -14172407 - HAL1 LINE L1 -319 2188 1846 2695 270 87 29 chr3 203864758 203865254 -14171904 - HAL1 LINE L1 -751 1756 1290 1758 159 3 29 chr3 203865254 203865569 -14171589 - AluJb SINE Alu -4 308 2 2695 270 87 29 chr3 203865569 203866227 -14170931 - HAL1 LINE L1 -1217 1290 536 501 174 128 9 chr3 203866389 203866498 -14170660 - MER46C DNA MER2_type -209 129 8 319 261 14 0 chr3 203866678 203866747 -14170411 + MIR SINE MIR 51 120 -142 6821 75 13 4 chr3 203866747 203866930 -14170228 + L1PA10 LINE L1 4315 4495 -1673 2343 101 0 7 chr3 203866930 203867236 -14169922 + AluSc SINE Alu 1 304 -5 6821 75 13 4 chr3 203867236 203868912 -14168246 + L1PA10 LINE L1 4495 6168 0 214 295 26 0 chr3 203868918 203868996 -14168162 + MIR SINE MIR 106 185 -77 519 313 114 47 chr3 203869003 203869451 -14167707 - L2 LINE L2 -4 3309 2832 1465 84 11 0 chr3 203869654 203869844 -14167314 + AluSg/x SINE Alu 114 305 -7 2233 245 56 27 chr3 203869852 203870731 -14166427 + L1M3a LINE L1 901 1793 -4242 711 118 0 0 chr3 203870731 203870833 -14166325 - AluSg/x SINE Alu -1 311 210 1431 247 67 26 chr3 203870833 203871448 -14165710 + L1M1 LINE L1 2986 3625 -3940 463 211 147 46 chr3 203871441 203871457 -14165701 - L1ME4a LINE L1 -14 6107 6094 * 2166 126 10 7 chr3 203871457 203871767 -14165391 + AluSx SINE Alu 1 311 -1 463 211 147 46 chr3 203871767 203871968 -14165190 - L1ME4a LINE L1 -27 6094 5868 2049 110 7 3 chr3 203872589 203872871 -14164287 + AluSx SINE Alu 1 283 -29 219 69 0 0 chr3 203872871 203872900 -14164258 + (AAATG)n Simple_repeat Simple_repeat 2 30 0 373 237 34 59 chr3 203872910 203873028 -14164130 - L1ME4a LINE L1 -437 5684 5570 602 264 34 11 chr3 203873124 203873302 -14163856 + MIR SINE MIR 81 262 0 373 271 128 16 chr3 203873490 203873678 -14163480 - L1MC5 LINE L1 -28 7933 7725 2073 112 20 16 chr3 203873867 203874171 -14162987 - AluJb SINE Alu -7 305 1 188 365 10 10 chr3 203874234 203874330 -14162828 + MIR3 SINE MIR 11 106 -102 324 289 81 33 chr3 203875170 203875284 -14161874 - L1MC4a LINE L1 -111 6010 5903 1419 121 36 5 chr3 203875284 203875507 -14161651 - MER30 DNA MER1_type 0 230 1 324 289 81 33 chr3 203875507 203875675 -14161483 - L1MC4a LINE L1 -218 5903 5729 237 301 133 22 chr3 203876052 203876278 -14160880 + L2 LINE L2 2839 3089 -183 557 268 18 0 chr3 203877189 203877353 -14159805 - MIR SINE MIR -16 246 80 259 313 35 0 chr3 203877409 203877523 -14159635 - MER5A DNA MER1_type 0 178 63 217 288 62 41 chr3 203877436 203877582 -14159576 + MER5A DNA MER1_type 40 188 -1 * 1921 93 26 60 chr3 203877751 203878053 -14159105 + AluSc SINE Alu 5 296 -13 202 273 124 50 chr3 203878053 203878174 -14158984 + L3 LINE CR1 1333 1462 -115 1121 206 113 29 chr3 203878360 203878704 -14158454 - MER93b LTR ERV1 0 373 1 317 250 82 87 chr3 203879214 203879398 -14157760 - MIR SINE MIR -44 218 36 599 168 119 0 chr3 203879946 203880148 -14157010 - AluSq SINE Alu -9 304 79 3501 72 4 11 chr3 203881248 203881704 -14155454 - MLT2A2 LTR ERVL 0 453 1 281 246 14 14 chr3 203882318 203882387 -14154771 - MLT1I LTR MaLR -249 160 92 2316 75 4 0 chr3 203882925 203883239 -14153919 + AluY SINE Alu 1 315 0 6187 168 28 11 chr3 203883239 203885330 -14151828 + L1MA7 LINE L1 4168 6289 -2 1220 77 0 0 chr3 203885368 203885523 -14151635 + AluSc SINE Alu 133 287 -22 257 196 20 0 chr3 203885837 203885888 -14151270 - L1ME LINE L1 -271 5850 5799 304 309 56 52 chr3 203885937 203886170 -14150988 - L1ME LINE L1 -336 5785 5552 346 338 74 23 chr3 203886326 203886625 -14150533 + L2 LINE L2 2411 2724 -590 2198 104 17 0 chr3 203886645 203886932 -14150226 + AluSx SINE Alu 2 293 -19 813 200 13 0 chr3 203887007 203887157 -14150001 - AluJb SINE Alu -24 288 137 233 211 53 0 chr3 203887815 203887872 -14149286 - MIR SINE MIR -85 177 118 333 175 0 0 chr3 203887889 203887946 -14149212 + U6 snRNA snRNA 1 57 -50 277 297 62 35 chr3 203888275 203888420 -14148738 + MIR SINE MIR 59 207 -55 459 35 0 0 chr3 203889144 203889201 -14147957 + (TG)n Simple_repeat Simple_repeat 1 57 0 192 182 0 0 chr3 203889792 203889836 -14147322 + (TTA)n Simple_repeat Simple_repeat 3 46 0 378 298 0 0 chr3 203889913 203890007 -14147151 - MIR SINE MIR -121 141 48 375 41 0 0 chr3 203890113 203890162 -14146996 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 181 296 0 0 chr3 203890830 203890874 -14146284 + L2 LINE L2 3151 3194 -78 2317 87 10 3 chr3 203890905 203891203 -14145955 - AluSx SINE Alu -12 300 1 1181 104 0 0 chr3 203891203 203891386 -14145772 - L1P LINE L1 -1649 4497 4315 294 261 14 0 chr3 203891386 203891455 -14145703 - MIR SINE MIR -142 120 51 491 184 128 9 chr3 203891635 203891744 -14145414 + MER46C DNA MER2_type 8 129 -209 1919 278 58 39 chr3 203891906 203892565 -14144593 + HAL1 LINE L1 536 1216 -1291 1872 159 3 29 chr3 203892565 203892880 -14144278 + AluJb SINE Alu 2 308 -4 1919 278 58 39 chr3 203892880 203893059 -14144099 + HAL1 LINE L1 1216 1390 -1117 2338 115 62 30 chr3 203893207 203893607 -14143551 + MER21A LTR ERV1 519 931 0 1818 184 40 75 chr3 203893642 203894156 -14143002 - MER4D LTR ERV1 -225 666 62 1574 154 32 14 chr3 203894148 203894428 -14142730 - MER49 LTR ERV1 -638 285 1 * 576 276 89 31 chr3 203894428 203894721 -14142437 + L2 LINE L2 3003 3312 -1 3589 30 5 5 chr3 203894728 203895155 -14142003 + L1PA4 LINE L1 5729 6155 0 239 114 23 0 chr3 203895300 203895344 -14141814 + (TA)n Simple_repeat Simple_repeat 2 46 0 251 170 198 47 chr3 203896087 203896193 -14140965 - MIR SINE MIR -14 248 127 2203 95 0 3 chr3 203896613 203896939 -14140219 - AluSx SINE Alu 0 326 2 1248 240 63 96 chr3 203896951 203897630 -14139528 - HAL1 LINE L1 -5 2502 1846 311 297 0 0 chr3 203897888 203897952 -14139206 + Tigger2 DNA MER2_type 2643 2706 -12 26 30 0 0 chr3 203897995 203898028 -14139130 + AT_rich Low_complexity Low_complexity 1 33 0 812 100 73 0 chr3 203898031 203898141 -14139017 - AluJb SINE Alu -194 118 1 284 168 11 137 chr3 203898141 203898236 -14138922 + Charlie5 DNA MER1_type 2542 2624 0 1730 171 27 3 chr3 203898332 203898625 -14138533 - AluJb SINE Alu -11 301 2 192 408 17 8 chr3 203898714 203898834 -14138324 + MIR SINE MIR 30 150 -58 884 210 41 41 chr3 203899254 203899497 -14137661 - MLT2D LTR ERVL -170 244 2 706 211 47 11 chr3 203899498 203899688 -14137470 - L1M4 LINE L1 -1572 4574 4378 201 343 29 0 chr3 203899928 203899970 -14137188 - MIR SINE MIR -111 151 112 2278 159 78 0 chr3 203899970 203900367 -14136791 + MSTA LTR MaLR 1 428 0 201 343 29 0 chr3 203900367 203900426 -14136732 - MIR SINE MIR -150 112 47 959 236 8 40 chr3 203900651 203900901 -14136257 - MER4D LTR ERV1 0 903 662 2285 95 0 41 chr3 203900933 203901249 -14135909 - AluSx SINE Alu -9 303 1 1267 206 73 7 chr3 203901389 203901675 -14135483 + AluJo SINE Alu 1 305 -7 213 346 13 0 chr3 203902177 203902255 -14134903 - MIR SINE MIR -154 108 30 1371 286 128 19 chr3 203902320 203903143 -14134015 + L2 LINE L2 2221 3125 -188 180 77 0 0 chr3 203903143 203903169 -14133989 + (TTCC)n Simple_repeat Simple_repeat 1 26 0 181 232 0 37 chr3 203903270 203903352 -14133806 + CT-rich Low_complexity Low_complexity 4 82 0 348 317 18 18 chr3 203903361 203903528 -14133630 - AluSc SINE Alu -28 271 105 560 176 14 27 chr3 203904259 203904407 -14132751 + GA-rich Low_complexity Low_complexity 3 148 0 188 191 24 0 chr3 203904508 203904550 -14132608 - MIR SINE MIR -155 107 65 552 282 79 15 chr3 203905709 203905911 -14131247 - MIR SINE MIR -26 236 22 1854 159 3 7 chr3 203905911 203906219 -14130939 - AluJb SINE Alu -3 309 3 391 300 9 0 chr3 203907066 203907176 -14129982 + MIR3 SINE MIR 70 181 -27 2791 164 23 11 chr3 203907289 203907819 -14129339 - LTR27 LTR ERV1 -141 495 7 246 297 99 0 chr3 203909470 203909581 -14127577 + L2 LINE L2 3133 3254 -18 288 200 0 0 chr3 203909702 203909777 -14127381 + T-rich Low_complexity Low_complexity 1 75 0 2396 86 0 13 chr3 203910044 203910358 -14126800 - AluSg SINE Alu 0 310 1 355 283 118 21 chr3 203910376 203910563 -14126595 - MIR SINE MIR -11 251 47 671 225 30 0 chr3 203910566 203910735 -14126423 - MIR SINE MIR -7 255 82 198 279 81 27 chr3 203912227 203912338 -14124820 + MIR SINE MIR 16 132 -76 * 2208 264 157 13 chr3 203912336 203913418 -14123740 + L2 LINE L2 2074 3313 0 379 299 67 53 chr3 203913915 203914199 -14122959 - L1MEc LINE L1 -2129 4221 3934 1956 152 3 37 chr3 203914290 203914639 -14122519 - MER1B DNA MER1_type 0 337 1 1866 135 44 0 chr3 203914676 203914972 -14122186 - AluSx SINE Alu -3 309 1 873 254 52 24 chr3 203915010 203915298 -14121860 + AluJb SINE Alu 2 297 -5 332 281 7 68 chr3 203916001 203916147 -14121011 - MIR3 SINE MIR -64 144 8 385 310 183 0 chr3 203916663 203916860 -14120298 - MIR SINE MIR -10 252 20 347 291 10 0 chr3 203916884 203916987 -14120171 + MIR3 SINE MIR 93 196 -12 180 262 0 0 chr3 203917616 203917658 -14119500 + MIR3 SINE MIR 164 205 -3 26 30 0 0 chr3 203918079 203918112 -14119046 + AT_rich Low_complexity Low_complexity 1 33 0 2255 82 3 28 chr3 203918120 203918437 -14118721 + AluY SINE Alu 1 309 -2 2112 135 3 0 chr3 203918511 203918814 -14118344 + AluSx SINE Alu 1 304 -8 260 241 54 54 chr3 203918954 203919066 -14118092 - L1MEc LINE L1 -3108 3242 3131 14621 196 50 13 chr3 203919105 203925512 -14111646 + L1PB2 LINE L1 6 6863 -4 1491 317 57 51 chr3 203925689 203926691 -14110467 - L1 LINE L1 -5273 1008 1 1426 251 182 22 chr3 203926695 203926867 -14110291 - L1MEc LINE L1 -4921 1610 1467 1411 205 16 46 chr3 203926867 203927170 -14109988 - AluJb SINE Alu -14 298 5 1426 251 182 22 chr3 203927170 203927679 -14109479 - L1MEc LINE L1 -5064 1467 820 507 250 59 20 chr3 203927686 203927838 -14109320 - L1MEc LINE L1 -6202 329 172 399 128 35 35 chr3 203927965 203928051 -14109107 - L1PB2 LINE L1 -87 6064 5979 2517 66 3 0 chr3 203928422 203928725 -14108433 - AluY SINE Alu -7 304 1 570 222 21 28 chr3 203929843 203930080 -14107078 + ALR/Alpha Satellite centromeric 1 235 -69 249 162 66 176 chr3 203930413 203930549 -14106609 - MIR SINE MIR -23 239 119 724 286 37 34 chr3 203930710 203930922 -14106236 - LTR16A1 LTR ERVL 0 457 242 3499 72 16 0 chr3 203930922 203931365 -14105793 + MLT2A2 LTR ERVL 2 451 -2 724 286 37 34 chr3 203931365 203931446 -14105712 - LTR16A1 LTR ERVL -215 242 163 458 342 34 18 chr3 203931856 203932372 -14104786 - HERV16-B2 LTR ERVL -202 5283 4782 1084 346 51 16 chr3 203932536 203933173 -14103985 - HERV16-B2 LTR ERVL -1241 4523 3829 1299 157 5 0 chr3 203933173 203933377 -14103781 + MER2 DNA MER2_type 1 205 -140 269 239 42 28 chr3 203933409 203933480 -14103678 + MER2 DNA MER2_type 269 340 -5 1124 307 59 32 chr3 203933534 203934059 -14103099 - HERV16-B2 LTR ERVL -1937 3827 3289 291 348 44 7 chr3 203934109 203934244 -14102914 - HERV16-B2 LTR ERVL -4739 257 118 564 243 47 18 chr3 203934647 203934816 -14102342 - MIR3 SINE MIR -25 183 10 224 228 22 87 chr3 203935335 203935427 -14101731 + MIR SINE MIR 156 241 -21 2057 129 4 0 chr3 203935605 203935883 -14101275 + AluSx SINE Alu 1 279 -33 225 0 0 0 chr3 203935883 203935908 -14101250 + (CAA)n Simple_repeat Simple_repeat 2 26 0 473 194 30 45 chr3 203936934 203937068 -14100090 - L3 LINE CR1 -79 1498 1367 663 260 141 9 chr3 203937155 203937545 -14099613 + L2 LINE L2 2657 3096 -217 2275 97 13 3 chr3 203938334 203938642 -14098516 - AluSx SINE Alu -1 311 1 1350 103 31 0 chr3 203938643 203938837 -14098321 - MSTB1 LTR MaLR -232 200 1 1723 126 72 23 chr3 203938837 203939185 -14097973 + L1MA8 LINE L1 5925 6289 -2 276 263 88 26 chr3 203939198 203939312 -14097846 + MIR3 SINE MIR 15 135 -73 225 65 0 0 chr3 203939565 203939596 -14097562 + (CA)n Simple_repeat Simple_repeat 2 32 0 495 154 11 0 chr3 203939780 203939871 -14097287 - MLT2B2 LTR ERVL 0 515 424 235 242 30 0 chr3 203941432 203941498 -14095660 - MIR SINE MIR -106 102 35 567 285 50 16 chr3 203941824 203942048 -14095110 - MIR SINE MIR -12 250 19 2421 96 0 6 chr3 203942632 203942944 -14094214 - AluSx SINE Alu -2 310 1 376 232 0 24 chr3 203943431 203943573 -14093585 + MIR SINE MIR 20 154 -62 278 349 38 50 chr3 203944282 203944520 -14092638 + L2 LINE L2 2999 3233 -39 351 320 23 40 chr3 203944660 203944835 -14092323 - MIR3 SINE MIR -18 190 19 361 215 44 74 chr3 203945558 203945693 -14091465 + L2 LINE L2 3160 3290 -23 419 278 0 0 chr3 203945772 203945869 -14091289 + MIR3 SINE MIR 109 205 -3 360 326 48 4 chr3 203945968 203946167 -14090991 + MIR SINE MIR 28 237 -25 317 286 92 8 chr3 203946358 203946477 -14090681 - MIR SINE MIR -83 179 51 2907 3 0 0 chr3 203946488 203946793 -14090365 - AluYa5 SINE Alu -6 305 1 291 316 18 18 chr3 203947159 203947273 -14089885 + MIR3 SINE MIR 81 194 -14 402 288 78 16 chr3 203947931 203948122 -14089036 + MIR3 SINE MIR 3 205 -3 367 345 53 10 chr3 203948752 203948958 -14088200 + L2 LINE L2 2544 2758 -556 279 212 115 26 chr3 203949558 203949671 -14087487 + Charlie8 DNA MER1_type 76 198 -2219 234 259 0 0 chr3 203949906 203949964 -14087194 + Charlie8 DNA MER1_type 1355 1412 -1005 240 275 13 67 chr3 203950513 203950662 -14086496 + MIR SINE MIR 51 191 -71 441 324 88 6 chr3 203950709 203950879 -14086279 + MIR SINE MIR 13 196 -66 1201 94 0 0 chr3 203951742 203951928 -14085230 + AluSg/x SINE Alu 137 322 0 820 301 29 41 chr3 203951929 203952089 -14085069 + HAL1 LINE L1 1154 1314 -1193 2225 103 0 23 chr3 203952089 203952391 -14084767 - AluSg1 SINE Alu -14 295 1 820 301 29 41 chr3 203952391 203952721 -14084437 + HAL1 LINE L1 1314 1638 -869 444 214 0 132 chr3 203953217 203953290 -14083868 + MER5B DNA MER1_type 38 80 -98 1843 168 0 10 chr3 203953290 203953582 -14083576 + AluJo SINE Alu 12 300 -12 444 214 0 132 chr3 203953582 203953667 -14083491 + MER5B DNA MER1_type 80 175 -3 1667 157 84 34 chr3 203954328 203954684 -14082474 - THE1C LTR MaLR -1 374 1 242 299 12 11 chr3 203955398 203955500 -14081658 - MER5B DNA MER1_type -68 121 19 224 284 59 10 chr3 203956165 203956267 -14080891 + MIR3 SINE MIR 54 160 -48 285 284 21 84 chr3 203956267 203956457 -14080701 - MER5B DNA MER1_type 0 178 1 1435 159 0 9 chr3 203956823 203957056 -14080102 - AluSq SINE Alu -2 311 81 292 183 83 58 chr3 203957089 203957209 -14079949 + LTR67 LTR ERVL 435 557 0 2281 119 3 0 chr3 203957351 203957661 -14079497 - AluSq SINE Alu -2 311 1 785 300 91 40 chr3 203957671 203958265 -14078893 + L2 LINE L2 1751 2374 -940 1305 161 54 166 chr3 203958272 203958706 -14078452 - L1MB4 LINE L1 -27 6153 5672 2642 132 31 19 chr3 203958706 203959129 -14078029 - MSTC LTR MaLR 0 428 1 4782 235 98 42 chr3 203959129 203960693 -14076465 - MSTC-int LTR MaLR 0 1651 1 286 139 0 0 chr3 203960695 203960738 -14076420 - MSTC LTR MaLR -2 426 384 1305 161 54 166 chr3 203960738 203960861 -14076297 - L1MB4 LINE L1 -508 5672 5647 371 171 106 81 chr3 203960840 203960963 -14076195 - L1M3a LINE L1 -5068 1497 1372 * 445 231 66 33 chr3 203960966 203961186 -14075972 - L1M3a LINE L1 -5708 938 489 180 262 0 0 chr3 203961862 203961904 -14075254 - MIR3 SINE MIR -3 205 164 347 291 10 0 chr3 203962533 203962636 -14074522 - MIR3 SINE MIR -12 196 93 385 310 183 0 chr3 203962660 203962857 -14074301 + MIR SINE MIR 20 252 -10 383 289 43 59 chr3 203963373 203963560 -14073598 + MIR3 SINE MIR 8 191 -17 1466 261 186 6 chr3 203963977 203964798 -14072360 - L2 LINE L2 0 3313 2342 1311 292 89 39 chr3 203966620 203967134 -14070024 + MLT1K LTR MaLR 47 586 -2 457 315 42 18 chr3 203967299 203967464 -14069694 - MIR3 SINE MIR -30 178 10 224 269 13 13 chr3 203968526 203968604 -14068554 + GA-rich Low_complexity Low_complexity 1 78 0 282 373 91 7 chr3 203968708 203969150 -14068008 + L2 LINE L2 1937 2415 -899 353 232 0 36 chr3 203969773 203969885 -14067273 + MER5A DNA MER1_type 81 188 -1 290 390 6 12 chr3 203971347 203971519 -14065639 + MIR3 SINE MIR 31 201 -7 377 254 201 0 chr3 203972519 203972653 -14064505 - MIR3 SINE MIR -11 197 37 2046 104 10 34 chr3 203973351 203973649 -14063509 + AluSp SINE Alu 1 291 -22 268 320 30 10 chr3 203973707 203973807 -14063351 - MIR SINE MIR -87 121 20 1060 93 74 19 chr3 203974344 203974506 -14062652 + THE1B LTR MaLR 194 364 0 1996 148 0 13 chr3 203974920 203975218 -14061940 - AluSx SINE Alu -12 300 7 194 325 55 49 chr3 203976098 203976261 -14060897 + L2 LINE L2 2643 2806 -508 2213 122 0 0 chr3 203976518 203976821 -14060337 + AluSx SINE Alu 1 303 -9 220 309 79 43 chr3 203979052 203979191 -14057967 - MIR SINE MIR -71 191 48 696 226 112 49 chr3 203979232 203979323 -14057835 - MER5C DNA MER1_type 0 324 240 2061 84 3 21 chr3 203979323 203979664 -14057494 + AluY SINE Alu 1 336 0 696 226 112 49 chr3 203979664 203979875 -14057283 - MER5C DNA MER1_type -84 240 1 271 259 40 130 chr3 203979887 203980076 -14057082 + MER5A DNA MER1_type 4 189 0 1072 249 109 26 chr3 203980333 203980763 -14056395 - L2 LINE L2 -1135 2179 1714 623 273 169 18 chr3 203981054 203981497 -14055661 - L1MC5 LINE L1 -178 7783 7274 1282 112 0 11 chr3 203981497 203981675 -14055483 + AluSg/x SINE Alu 132 307 -3 225 302 0 0 chr3 203981698 203981751 -14055407 - L1MC4a LINE L1 -460 7348 7296 2219 275 157 17 chr3 203981803 203982821 -14054337 - L2 LINE L2 -1606 1708 548 192 338 0 0 chr3 203982821 203982898 -14054260 + MIR SINE MIR 165 241 -21 2342 104 0 0 chr3 203983007 203983306 -14053852 - AluSx SINE Alu -13 299 1 297 256 92 55 chr3 203983324 203983488 -14053670 + L3 LINE CR1 1341 1510 -67 321 200 29 14 chr3 203983898 203983968 -14053190 + MIR SINE MIR 92 162 -100 2167 122 3 0 chr3 203984013 203984307 -14052851 - AluSx SINE Alu -17 295 1 405 316 10 72 chr3 203984310 203984519 -14052639 - MIR SINE MIR -62 200 5 255 174 0 0 chr3 203984521 203984567 -14052591 + MIR SINE MIR 217 262 0 362 256 18 89 chr3 203985045 203985213 -14051945 - L2 LINE L2 0 3313 3158 1853 136 23 7 chr3 203985704 203986005 -14051153 + AluSx SINE Alu 1 306 -6 22 0 0 54 chr3 203986313 203986333 -14050825 + AT_rich Low_complexity Low_complexity 1 20 -15 10775 209 32 5 chr3 203986333 203989470 -14047688 + L1PA16 LINE L1 2986 6157 -9 22 0 0 54 chr3 203989470 203989486 -14047672 + AT_rich Low_complexity Low_complexity 20 35 0 1007 140 58 0 chr3 203990154 203990325 -14046833 - AluJo SINE Alu -11 301 121 264 211 92 70 chr3 203990431 203990659 -14046499 - L1ME4a LINE L1 -115 6006 5774 2251 88 3 31 chr3 203990766 203991086 -14046072 - AluY SINE Alu 0 311 1 247 281 0 0 chr3 203991905 203991969 -14045189 - L2 LINE L2 -9 3263 3200 488 293 71 18 chr3 203993002 203993227 -14043931 + MIR SINE MIR 20 256 -6 288 222 141 20 chr3 203993775 203993874 -14043284 - MIR SINE MIR -81 127 17 420 314 0 15 chr3 203994191 203994328 -14042830 + MIR SINE MIR 20 154 -108 213 219 78 0 chr3 203994343 203994407 -14042751 + MER91C DNA MER1_type 35 103 -37 820 117 66 0 chr3 203996108 203996245 -14040913 - L1MA5 LINE L1 -3 6297 6152 321 312 111 5 chr3 203998092 203998281 -14038877 - MIR SINE MIR -48 214 6 313 359 45 20 chr3 203998388 203998633 -14038525 - L2 LINE L2 -339 2975 2725 1076 195 29 0 chr3 203999317 203999522 -14037636 - MER58A DNA MER1_type 0 224 14 2526 54 7 0 chr3 203999523 203999817 -14037341 - AluY SINE Alu -15 296 1 740 98 8 41 chr3 204000357 204000480 -14036678 - L1MA4 LINE L1 -1 6299 6181 2532 83 0 3 chr3 204000503 204000815 -14036343 - AluY SINE Alu 0 311 1 536 276 166 45 chr3 204000829 204001320 -14035838 + L2 LINE L2 2763 3312 -1 500 310 49 59 chr3 204001374 204001454 -14035704 + LTR33 LTR ERVL 1 80 -441 2493 90 0 0 chr3 204001454 204001766 -14035392 - AluSx SINE Alu 0 312 1 500 310 49 59 chr3 204001766 204001972 -14035186 + LTR33 LTR ERVL 80 284 -237 365 293 41 8 chr3 204002012 204002135 -14035023 + LTR33 LTR ERVL 156 282 -239 594 256 42 12 chr3 204002169 204002337 -14034821 + LTR33 LTR ERVL 347 519 -2 251 65 0 0 chr3 204003104 204003135 -14034023 + (GA)n Simple_repeat Simple_repeat 2 32 0 433 121 24 12 chr3 204003135 204003218 -14033940 + GA-rich Low_complexity Low_complexity 2 85 0 39452 78 7 5 chr3 204004877 204010999 -14026159 - L1PA6 LINE L1 -5 6149 15 2060 138 3 0 chr3 204011200 204011516 -14025642 - AluSx SINE Alu 0 317 1 209 333 0 0 chr3 204011571 204011628 -14025530 - L2 LINE L2 -226 3046 2990 242 35 0 0 chr3 204011748 204011777 -14025381 - Alu SINE Alu -44 122 94 591 212 212 5 chr3 204012124 204012313 -14024845 + MIR SINE MIR 25 252 -10 306 332 102 51 chr3 204012301 204012614 -14024544 - L2 LINE L2 -10 3262 2934 * 2091 98 0 0 chr3 204012770 204013035 -14024123 - AluSx SINE Alu -46 266 2 346 338 74 23 chr3 204013055 204013354 -14023804 - L2 LINE L2 -590 2724 2411 908 211 6 6 chr3 204013362 204013523 -14023635 + Tigger7 DNA MER2_type 10 170 -380 299 98 0 0 chr3 204013527 204013568 -14023590 + Tigger7 DNA MER2_type 2209 2249 -238 4142 197 41 35 chr3 204013568 204015150 -14022008 + L1MB3 LINE L1 4267 5837 -346 288 0 0 0 chr3 204015150 204015182 -14021976 + (CA)n Simple_repeat Simple_repeat 1 32 0 4142 197 41 35 chr3 204015182 204015193 -14021965 + L1MB3 LINE L1 5837 5846 -337 1223 132 5 19 chr3 204015193 204015406 -14021752 + L1MB3 LINE L1 5967 6176 -7 4142 197 41 35 chr3 204015406 204015691 -14021467 + L1MB3 LINE L1 5846 6176 -7 404 286 52 42 chr3 204015899 204016112 -14021046 - L2 LINE L2 -1897 1417 1203 492 307 44 26 chr3 204016337 204016565 -14020593 + MIR SINE MIR 18 249 -13 980 212 153 32 chr3 204016705 204017083 -14020075 - LTR37A LTR ERV1 0 426 3 2135 126 13 3 chr3 204017572 204017874 -14019284 - AluSx SINE Alu -7 305 1 489 280 98 23 chr3 204018355 204018569 -14018589 - MIR SINE MIR 0 262 33 844 190 32 99 chr3 204018818 204019102 -14018056 - MLT1A2 LTR MaLR -109 265 1 360 64 0 0 chr3 204019163 204019210 -14017948 + (TG)n Simple_repeat Simple_repeat 2 48 0 313 346 19 0 chr3 204019521 204019625 -14017533 - MIR SINE MIR -73 135 30 2408 91 13 0 chr3 204019657 204019964 -14017194 - AluSx SINE Alu 0 312 2 189 0 0 0 chr3 204019973 204019994 -14017164 + (T)n Simple_repeat Simple_repeat 1 21 0 583 302 44 6 chr3 204020320 204020502 -14016656 + MIR3 SINE MIR 12 200 -8 2362 99 0 0 chr3 204020639 204020941 -14016217 + AluY SINE Alu 1 302 -9 695 285 98 0 chr3 204020945 204021159 -14015999 + MIR SINE MIR 28 262 0 1866 98 4 8 chr3 204021708 204021962 -14015196 - AluSx SINE Alu -6 306 54 1812 216 62 49 chr3 204022406 204022893 -14014265 - MLT1J LTR MaLR -18 493 1 2464 67 7 0 chr3 204023003 204023301 -14013857 - AluSc SINE Alu -9 300 1 269 262 95 12 chr3 204023380 204023464 -14013694 + L2 LINE L2 3136 3226 -46 272 259 13 111 chr3 204023964 204024046 -14013112 - MIR SINE MIR -63 145 134 2397 44 3 86 chr3 204024046 204024385 -14012773 + AluY SINE Alu 1 311 0 272 259 13 111 chr3 204024385 204024481 -14012677 - MIR SINE MIR -74 134 30 423 214 17 60 chr3 204024553 204024670 -14012488 - L1ME LINE L1 -454 5667 5556 306 302 0 35 chr3 204025920 204026006 -14011152 - MIR SINE MIR -70 192 110 217 324 14 14 chr3 204026381 204026455 -14010703 + MIR3 SINE MIR 114 187 -21 200 346 95 58 chr3 204027000 204027295 -14009863 - L2 LINE L2 -1 3271 2966 906 217 19 33 chr3 204027333 204027545 -14009613 - MER96B DNA MER1_type? 0 417 209 331 286 10 0 chr3 204027859 204027957 -14009201 - L2 LINE L2 -2 3270 3172 221 289 28 138 chr3 204029017 204029270 -14007888 - L2 LINE L2 -62 3210 2986 232 240 60 50 chr3 204029901 204030001 -14007157 - MIR3 SINE MIR -94 114 14 611 261 95 9 chr3 204030089 204030300 -14006858 + MIR SINE MIR 28 256 -6 23 0 0 0 chr3 204030740 204030763 -14006395 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 204031335 204031356 -14005802 + AT_rich Low_complexity Low_complexity 1 21 0 1493 113 0 18 chr3 204031581 204031803 -14005355 + MLT1C LTR MaLR 1 218 -249 301 212 133 26 chr3 204032712 204032825 -14004333 - L1ME4a LINE L1 -6 6115 5991 22 35 0 0 chr3 204032872 204032901 -14004257 + AT_rich Low_complexity Low_complexity 1 29 0 739 184 42 68 chr3 204033342 204033400 -14003758 - MLT1F LTR MaLR 0 542 484 2281 167 10 37 chr3 204033400 204033801 -14003357 - MLT1B LTR MaLR 0 390 1 739 184 42 68 chr3 204033801 204033932 -14003226 - MLT1F LTR MaLR -58 484 358 2170 104 10 10 chr3 204033972 204034281 -14002877 - AluSc SINE Alu 0 309 1 904 153 0 0 chr3 204034627 204034758 -14002400 - AluSg/x SINE Alu -22 288 158 2253 112 0 3 chr3 204034767 204035070 -14002088 - AluSg SINE Alu -8 302 1 353 269 148 11 chr3 204035075 204035257 -14001901 - HAL1b LINE L1 -676 672 466 1569 164 68 0 chr3 204035818 204036099 -14001059 + AluJb SINE Alu 1 300 -12 21 0 0 0 chr3 204036437 204036458 -14000700 + AT_rich Low_complexity Low_complexity 1 21 0 1787 180 0 13 chr3 204036633 204036944 -14000214 - AluJb SINE Alu -4 308 2 401 189 168 0 chr3 204037325 204037342 -13999816 - L1MA10 LINE L1 -23 6311 6295 597 210 42 56 chr3 204037342 204037573 -13999585 - L1ME1 LINE L1 -46 6400 6177 1391 235 119 21 chr3 204037578 204038095 -13999063 - MLT2F LTR ERVL 0 663 2 1367 156 0 5 chr3 204038108 204038326 -13998832 - AluJo SINE Alu -11 301 85 863 150 8 8 chr3 204038357 204038490 -13998668 - FLAM_C SINE Alu 0 133 1 3718 197 64 72 chr3 204038506 204039696 -13997462 - L1ME1 LINE L1 -270 6176 4978 723 216 0 8 chr3 204039696 204039830 -13997328 + FLAM_A SINE Alu 1 133 0 3718 197 64 72 chr3 204039830 204040406 -13996752 - L1ME1 LINE L1 -1468 4978 1498 1339 66 0 0 chr3 204040407 204040573 -13996585 - AluSc SINE Alu -11 298 133 13973 197 40 53 chr3 204040611 204042703 -13994455 - L1MA7 LINE L1 -2 7708 5589 2314 75 0 0 chr3 204042703 204043018 -13994140 - AluY SINE Alu 0 315 1 13973 197 40 53 chr3 204043018 204045018 -13992140 - L1MA7 LINE L1 -2121 5589 3563 1998 164 0 3 chr3 204045018 204045322 -13991836 - AluJb SINE Alu -9 303 1 13973 197 40 53 chr3 204045322 204045946 -13991212 - L1MA7 LINE L1 -4147 3563 2932 745 118 0 0 chr3 204045946 204046048 -13991110 + AluSg/x SINE Alu 208 309 -1 13973 197 40 53 chr3 204046048 204046933 -13990225 - L1MA7 LINE L1 -4778 2932 2343 2518 82 0 0 chr3 204046933 204047237 -13989921 - AluSx SINE Alu -6 306 3 13973 197 40 53 chr3 204047237 204047461 -13989697 - L1MA7 LINE L1 -5367 2343 2117 * 14803 192 25 13 chr3 204047460 204053570 -13983588 + L1PB2 LINE L1 1 6204 -4 1461 324 54 48 chr3 204053747 204054749 -13982409 - L1M3b LINE L1 -5273 1008 1 1476 251 182 22 chr3 204054753 204054925 -13982233 - L1MEc LINE L1 -4921 1475 1332 1398 205 16 46 chr3 204054925 204055228 -13981930 - AluJb SINE Alu -14 298 5 1476 251 182 22 chr3 204055228 204055737 -13981421 - L1MEc LINE L1 -5064 1332 685 515 250 59 20 chr3 204055744 204055896 -13981262 - L1MEc LINE L1 -6202 194 37 391 128 35 35 chr3 204056023 204056109 -13981049 - L1PB2 LINE L1 -87 6064 5979 2504 68 3 0 chr3 204056480 204056787 -13980371 - AluY SINE Alu -3 308 1 586 222 21 28 chr3 204057905 204058142 -13979016 + ALR/Alpha Satellite centromeric 1 235 -69 285 162 66 176 chr3 204058475 204058611 -13978547 - MIR SINE MIR -23 239 119 738 290 38 31 chr3 204058772 204058983 -13978175 - LTR16A1 LTR ERVL 0 457 242 3710 70 16 0 chr3 204058983 204059427 -13977731 + MLT2A2 LTR ERVL 1 451 -2 738 290 38 31 chr3 204059427 204059508 -13977650 - LTR16A1 LTR ERVL -215 242 163 458 309 68 11 chr3 204060243 204060434 -13976724 - HERV16 LTR ERVL -781 4983 4782 1139 344 51 16 chr3 204060598 204061235 -13975923 - HERV16 LTR ERVL -1241 4523 3829 1334 198 105 22 chr3 204061235 204061456 -13975702 + MER2 DNA MER2_type 1 257 -88 2876 10 0 0 chr3 204061456 204061764 -13975394 + AluY SINE Alu 1 308 -3 1334 198 105 22 chr3 204061764 204061856 -13975302 + MER2 DNA MER2_type 257 340 -5 1122 315 55 30 chr3 204061861 204062435 -13974723 - HERV16 LTR ERVL -1439 3827 3134 300 341 123 6 chr3 204062485 204062655 -13974503 - HERV16 LTR ERVL -4739 257 68 489 256 81 19 chr3 204062702 204062862 -13974296 - LTR16A1 LTR ERVL 0 457 288 183 186 70 0 chr3 204063177 204063220 -13973938 - L2 LINE L2 -248 3065 3020 440 190 0 0 chr3 204063946 204064024 -13973134 + Tigger5 DNA MER2_type 1 78 -2245 367 183 0 0 chr3 204064024 204064084 -13973074 - Tigger5 DNA MER2_type -3 2320 2261 1168 219 47 90 chr3 204064198 204064582 -13972576 - HAL1 LINE L1 -62 2445 2091 2332 101 3 0 chr3 204064582 204064880 -13972278 - AluSp SINE Alu -14 299 1 1168 219 47 90 chr3 204064880 204065051 -13972107 - HAL1 LINE L1 -416 2091 1914 384 200 0 0 chr3 204065053 204065133 -13972025 + CT-rich Low_complexity Low_complexity 4 83 0 1963 155 0 0 chr3 204065146 204065436 -13971722 - AluSx SINE Alu -22 290 1 509 229 127 57 chr3 204065436 204065680 -13971478 - HAL1 LINE L1 -579 1928 1668 411 145 0 0 chr3 204066216 204066285 -13970873 + (TA)n Simple_repeat Simple_repeat 2 70 0 1634 113 0 0 chr3 204066337 204066550 -13970608 - AluSx SINE Alu -99 213 1 1481 244 77 26 chr3 204066700 204067126 -13970032 - MLT1C LTR MaLR 0 467 20 248 174 0 0 chr3 204067380 204067426 -13969732 + Alu SINE Alu 256 301 -1 2047 216 50 57 chr3 204067455 204068354 -13968804 - L1ME LINE L1 -555 5611 4724 900 161 0 7 chr3 204068355 204068492 -13968666 + AluJo SINE Alu 1 136 -176 1929 221 28 22 chr3 204068499 204069033 -13968125 - L1ME LINE L1 -1411 4735 4199 1124 233 33 21 chr3 204069032 204069507 -13967651 + L1MC/D LINE L1 5033 5519 -743 * 4015 82 20 7 chr3 204069712 204070071 -13967087 - L1PB1 LINE L1 -1 6150 5780 488 16 16 0 chr3 204070071 204070132 -13967026 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 4015 82 20 7 chr3 204070132 204070310 -13966848 - L1PB1 LINE L1 -371 5780 5606 197 327 79 30 chr3 204070876 204070977 -13966181 - MIR SINE MIR -82 126 21 1964 153 10 0 chr3 204071123 204071423 -13965735 + AluJo SINE Alu 5 307 -5 1073 177 19 10 chr3 204071683 204071892 -13965266 + MER2 DNA MER2_type 1 211 -134 256 299 15 0 chr3 204071926 204071993 -13965165 + MER2 DNA MER2_type 278 345 0 595 376 28 0 chr3 204072150 204072331 -13964827 - MER91A DNA MER1_type -10 186 1 418 234 80 15 chr3 204072417 204072554 -13964604 + L2 LINE L2 3160 3305 -8 549 324 68 53 chr3 204072845 204073250 -13963908 + L2 LINE L2 2618 3026 -287 502 279 38 80 chr3 204075176 204075438 -13961720 - MLT1J LTR MaLR -260 251 1 349 223 9 12 chr3 204078076 204078180 -13958978 + LOR1a LTR ERV1 170 308 -189 * 778 213 232 28 chr3 204078177 204078431 -13958727 + LOR1a LTR ERV1 192 497 0 2450 69 0 7 chr3 204078739 204079042 -13958116 - AluSq SINE Alu -12 301 1 23 33 0 0 chr3 204079187 204079217 -13957941 + AT_rich Low_complexity Low_complexity 1 30 0 508 126 46 11 chr3 204079750 204079837 -13957321 + MER5A DNA MER1_type 100 189 0 452 113 141 0 chr3 204079903 204079974 -13957184 - MER5A DNA MER1_type -107 82 2 338 271 57 42 chr3 204079982 204080166 -13956992 + L1ME3A LINE L1 5944 6138 -24 876 212 0 6 chr3 204081088 204081253 -13955905 - FRAM SINE Alu -12 164 1 2534 141 62 12 chr3 204082904 204083308 -13953850 + MSTA LTR MaLR 5 428 0 472 152 0 0 chr3 204083775 204083841 -13953317 + AluS SINE Alu 2 67 -246 1762 100 3 86 chr3 204083841 204084132 -13953026 + AluSx SINE Alu 31 297 -15 681 236 45 89 chr3 204084149 204084395 -13952763 + MIR SINE MIR 28 262 0 356 222 151 24 chr3 204085241 204085367 -13951791 + L1MCc LINE L1 13 154 -6269 481 214 0 0 chr3 204085369 204085453 -13951705 - MER81 DNA DNA -30 84 1 860 279 92 16 chr3 204085454 204085759 -13951399 + L1MCc LINE L1 134 461 -5962 1918 112 127 26 chr3 204085778 204086118 -13951040 + THE1C LTR MaLR 2 375 0 1941 237 106 30 chr3 204086169 204086817 -13950341 + L1MCc LINE L1 872 1574 -4848 1173 174 31 0 chr3 204086843 204087039 -13950119 + MER20 DNA MER1_type 1 202 -17 585 271 53 72 chr3 204087040 204087361 -13949797 + L1M4 LINE L1 3232 3546 -2600 2643 107 14 19 chr3 204087850 204088216 -13948942 + THE1B LTR MaLR 1 364 0 1184 193 133 0 chr3 204088305 204088554 -13948604 - MSTB LTR MaLR 0 426 145 984 178 75 68 chr3 204089302 204089502 -13947656 - MER33 DNA MER1_type -2262 323 126 1543 169 57 33 chr3 204089502 204089803 -13947355 + AluJo SINE Alu 1 308 -4 2073 116 3 13 chr3 204089805 204090107 -13947051 + AluSx SINE Alu 2 300 -12 2084 98 19 48 chr3 204090109 204090424 -13946734 + AluSx SINE Alu 1 306 -6 984 178 75 68 chr3 204090424 204090538 -13946620 - MER33 DNA MER1_type -2459 126 1 549 170 58 134 chr3 204090776 204090947 -13946211 - MER45A DNA AcHobo -20 158 1 2165 88 7 0 chr3 204091356 204091666 -13945492 + AluSx SINE Alu 1 312 0 28 48 0 0 chr3 204092115 204092157 -13945001 + GC_rich Low_complexity Low_complexity 1 42 0 1926 100 56 0 chr3 204092828 204093097 -13944061 + AluSx SINE Alu 29 312 0 26 0 0 0 chr3 204093487 204093513 -13943645 + AT_rich Low_complexity Low_complexity 1 26 0 1768 107 0 0 chr3 204093643 204093867 -13943291 + AluSc SINE Alu 1 224 -85 1901 124 46 0 chr3 204093958 204094241 -13942917 - AluSx SINE Alu -16 296 1 2135 164 57 29 chr3 204094542 204094791 -13942367 - MSTB1 LTR MaLR 0 432 165 2710 113 11 5 chr3 204094791 204095164 -13941994 - THE1C LTR MaLR 0 375 1 2135 164 57 29 chr3 204095164 204095334 -13941824 - MSTB1 LTR MaLR -267 165 1 4669 172 84 23 chr3 204095341 204095410 -13941748 - L1MD1 LINE L1 -1 6241 6178 1659 197 13 0 chr3 204095410 204095710 -13941448 + AluJo SINE Alu 1 304 -8 4669 172 84 23 chr3 204095710 204096865 -13940293 - L1MD1 LINE L1 -64 6178 5095 1831 112 31 143 chr3 204096865 204097285 -13939873 - THE1C LTR MaLR -2 373 1 10598 117 11 44 chr3 204097285 204098915 -13938243 - THE1C-int LTR MaLR 0 1580 4 1794 138 43 101 chr3 204098918 204099316 -13937842 - THE1C LTR MaLR 0 375 1 4669 172 84 23 chr3 204099316 204099348 -13937810 - L1MD1 LINE L1 -1148 5094 4909 408 299 67 53 chr3 204099711 204099995 -13937163 - L1MD1 LINE L1 -2129 4017 3730 2094 152 3 37 chr3 204100086 204100435 -13936723 - MER1B DNA MER1_type 0 337 1 1854 135 44 0 chr3 204100472 204100768 -13936390 - AluSx SINE Alu -3 309 1 1764 149 35 10 chr3 204100805 204101093 -13936065 + AluJb SINE Alu 1 295 -17 24 67 0 0 chr3 204101200 204101245 -13935913 + AT_rich Low_complexity Low_complexity 1 45 0 26 30 0 0 chr3 204101344 204101377 -13935781 + AT_rich Low_complexity Low_complexity 1 33 0 2227 82 3 29 chr3 204101385 204101701 -13935457 + AluY SINE Alu 1 308 -3 2100 135 3 0 chr3 204101775 204102078 -13935080 + AluSx SINE Alu 1 304 -8 270 241 54 54 chr3 204102218 204102330 -13934828 - L1MD1 LINE L1 -3108 3038 2927 15592 196 33 8 chr3 204102369 204108868 -13928290 + L1PB1 LINE L1 6 6865 -2 1947 153 0 0 chr3 204109006 204109300 -13927858 - AluSx SINE Alu -17 295 2 303 272 72 96 chr3 204109400 204109627 -13927531 - L1MD1 LINE L1 -3520 2626 2412 2104 103 4 0 chr3 204109627 204109899 -13927259 - AluSx SINE Alu -39 273 1 303 272 72 96 chr3 204109899 204110086 -13927072 - L1MD1 LINE L1 -3734 2412 2222 1237 72 6 22 chr3 204110315 204110495 -13926663 + MSTA-int LTR MaLR 1404 1580 0 2198 155 131 8 chr3 204110495 204110876 -13926282 + MSTA LTR MaLR 1 428 0 1775 173 25 28 chr3 204110881 204111199 -13925959 - MLT1A1 LTR MaLR -48 317 1 5545 91 0 9 chr3 204112576 204113271 -13923887 - LTR8 LTR ERV1 0 691 3 230 368 96 0 chr3 204113528 204113653 -13923505 - L2 LINE L2 -4 3268 3132 190 320 146 19 chr3 204113688 204113791 -13923367 - MIR SINE MIR -39 223 108 185 159 23 0 chr3 204114146 204114190 -13922968 + CT-rich Low_complexity Low_complexity 4 48 0 234 322 9 30 chr3 204114202 204114363 -13922795 + CT-rich Low_complexity Low_complexity 1 157 0 291 306 7 27 chr3 204114428 204114575 -13922583 + CT-rich Low_complexity Low_complexity 4 147 0 259 339 17 8 chr3 204114609 204114727 -13922431 + CT-rich Low_complexity Low_complexity 4 122 0 244 228 18 18 chr3 204115724 204115781 -13921377 - L2 LINE L2 -211 3061 3005 1613 190 3 35 chr3 204115907 204116217 -13920941 + AluJb SINE Alu 1 300 -12 553 297 113 13 chr3 204116410 204116639 -13920519 + MIR SINE MIR 11 262 0 23 0 0 0 chr3 204116759 204116782 -13920376 + AT_rich Low_complexity Low_complexity 1 23 0 1364 122 20 0 chr3 204117588 204117785 -13919373 + L1PA16 LINE L1 5966 6166 0 861 297 113 10 chr3 204118258 204118777 -13918381 - L2 LINE L2 -123 3190 2615 341 305 71 67 chr3 204119209 204119386 -13917772 + L3 LINE CR1 1189 1369 -208 2462 129 28 6 chr3 204119386 204119742 -13917416 - THE1B LTR MaLR 0 364 1 341 305 71 67 chr3 204119742 204119846 -13917312 + L3 LINE CR1 1369 1471 -106 2086 239 74 12 chr3 204119863 204120364 -13916794 + MLT1F LTR MaLR 8 539 -3 234 288 27 18 chr3 204120753 204120864 -13916294 + (CATATA)n Simple_repeat Simple_repeat 5 116 0 1812 123 34 89 chr3 204121153 204121312 -13915846 - MER44D DNA MER2_type -1884 607 441 2169 103 14 3 chr3 204121312 204121619 -13915539 + AluSc SINE Alu 1 310 0 1812 123 34 89 chr3 204121619 204121806 -13915352 - MER44D DNA MER2_type -2050 441 7 22 0 0 0 chr3 204122531 204122553 -13914605 + AT_rich Low_complexity Low_complexity 1 22 0 553 281 96 30 chr3 204122619 204122942 -13914216 - L1MC5 LINE L1 -303 7658 7307 2355 91 14 0 chr3 204122942 204123238 -13913920 - AluSg SINE Alu -10 300 1 553 281 96 30 chr3 204123238 204123280 -13913878 - L1MC5 LINE L1 -654 7307 7269 265 224 112 31 chr3 204123293 204123391 -13913767 - L1MC4a LINE L1 -459 7349 7244 977 269 131 68 chr3 204123416 204123494 -13913664 - L1MC5 LINE L1 -733 7228 7156 2020 139 3 10 chr3 204123494 204123804 -13913354 - AluSx SINE Alu -4 308 1 977 269 131 68 chr3 204123804 204125260 -13911898 - L1MC5 LINE L1 -805 7156 5582 29 28 0 0 chr3 204125349 204125385 -13911773 + AT_rich Low_complexity Low_complexity 1 36 0 244 281 133 7 chr3 204126528 204126663 -13910495 - L1MEd LINE L1 -5407 712 561 213 315 27 47 chr3 204126838 204126987 -13910171 - MIR SINE MIR -56 206 61 845 86 17 0 chr3 204127015 204127132 -13910026 - AluSg/x SINE Alu -12 298 180 2258 94 3 10 chr3 204127286 204127585 -13909573 - AluSx SINE Alu -15 297 1 1098 91 0 0 chr3 204127948 204128080 -13909078 + AluSx SINE Alu 17 148 -164 3519 58 0 9 chr3 204128082 204128533 -13908625 - LTR7 LTR ERV1 -2 448 2 2568 76 45 13 chr3 204128538 204128918 -13908240 - HERVH LTR ERV1 0 7713 7322 1425 124 18 9 chr3 204128916 204129134 -13908024 - HERVH LTR ERV1 -1894 5819 5600 * 4376 143 1 1 chr3 204129135 204129797 -13907361 - HERVH LTR ERV1 -2564 5149 4488 3413 117 2 6 chr3 204129799 204130303 -13906855 - HERVH LTR ERV1 -3720 3993 3492 992 120 7 0 chr3 204130293 204130443 -13906715 - HERVH LTR ERV1 -4423 3290 3140 * 20744 94 17 8 chr3 204130422 204133392 -13903766 - HERVH LTR ERV1 -4718 2995 1 3534 56 0 7 chr3 204133394 204133844 -13903314 - LTR7 LTR ERV1 -2 448 2 985 139 0 0 chr3 204133846 204134012 -13903146 + AluSx SINE Alu 143 308 0 1544 161 63 7 chr3 204134092 204134378 -13902780 - MER2 DNA MER2_type -43 302 1 4726 128 49 13 chr3 204134592 204135344 -13901814 + MER4E LTR ERV1 1 779 0 397 295 60 78 chr3 204135463 204135795 -13901363 + L3 LINE CR1 1238 1563 -14 190 254 0 36 chr3 204135800 204135855 -13901303 - MIR SINE MIR 0 262 210 2325 156 34 10 chr3 204135869 204136280 -13900878 + MER61C LTR ERV1 14 434 0 636 297 29 14 chr3 204136294 204136503 -13900655 - MIR SINE MIR -38 224 13 2594 52 0 0 chr3 204136790 204137098 -13900060 - AluY SINE Alu -3 308 1 340 295 83 62 chr3 204137598 204137735 -13899423 + MIR SINE MIR 9 155 -107 2018 108 62 108 chr3 204137735 204138205 -13898953 + LTR7 LTR ERV1 1 448 -2 340 295 83 62 chr3 204138205 204138308 -13898850 + MIR SINE MIR 155 254 -8 181 361 87 6 chr3 204138422 204138605 -13898553 - L2 LINE L2 -309 3004 2807 180 339 46 46 chr3 204139032 204139162 -13897996 - MIR3 SINE MIR -12 196 67 2138 179 100 19 chr3 204140689 204141168 -13895990 + MLT2B1 LTR ERVL 3 520 0 459 235 15 22 chr3 204141190 204141326 -13895832 - L1MC5 LINE L1 -32 7929 7795 291 227 52 31 chr3 204141383 204141480 -13895678 + L1MC5 LINE L1 7830 7928 -33 230 362 86 9 chr3 204141825 204141930 -13895228 + L3 LINE CR1 1369 1481 -96 191 250 77 0 chr3 204142129 204142181 -13894977 + L3 LINE CR1 1521 1576 -1 210 338 0 0 chr3 204143028 204143099 -13894059 + L2 LINE L2 3170 3240 -32 1260 212 3 94 chr3 204143405 204143735 -13893423 + AluSx SINE Alu 9 308 -4 672 230 8 0 chr3 204143743 204143869 -13893289 + FLAM_A SINE Alu 2 128 -5 180 0 0 0 chr3 204144236 204144256 -13892902 + (T)n Simple_repeat Simple_repeat 1 20 0 725 290 84 20 chr3 204144352 204144649 -13892509 + MLT1G1 LTR MaLR 1 316 -279 937 202 60 52 chr3 204144649 204144885 -13892273 - ERVL LTR ERVL -1268 4496 4256 2438 100 115 20 chr3 204144885 204145276 -13891882 - MSTA LTR MaLR 0 428 1 937 202 60 52 chr3 204145276 204145291 -13891867 - ERVL LTR ERVL -1508 4256 4243 * 1728 264 84 20 chr3 204145288 204145826 -13891332 + ERVL LTR ERVL 4466 5037 -727 309 26 0 0 chr3 204146389 204146427 -13890731 + (CA)n Simple_repeat Simple_repeat 2 39 0 833 152 0 0 chr3 204146758 204146883 -13890275 + FLAM_C SINE Alu 1 125 -18 564 243 47 18 chr3 204147152 204147321 -13889837 - MIR3 SINE MIR -25 183 10 546 291 25 46 chr3 204147716 204147953 -13889205 + MIR SINE MIR 10 241 -21 2057 129 4 0 chr3 204148131 204148409 -13888749 + AluSx SINE Alu 1 279 -33 225 0 0 0 chr3 204148409 204148434 -13888724 + (CAA)n Simple_repeat Simple_repeat 2 26 0 559 260 98 49 chr3 204148823 204149211 -13887947 + L1ME4a LINE L1 5715 6121 0 279 275 129 42 chr3 204150487 204150638 -13886520 + MIR3 SINE MIR 1 161 -62 406 191 56 0 chr3 204150921 204151010 -13886148 + MER5A DNA MER1_type 16 109 -80 205 189 19 38 chr3 204151187 204151240 -13885918 - L2 LINE L2 0 3272 3221 426 282 13 27 chr3 204154504 204154653 -13882505 + MER5B DNA MER1_type 1 147 -31 195 317 231 0 chr3 204154965 204155069 -13882089 + L2 LINE L2 3186 3313 0 485 234 68 64 chr3 204155460 204155695 -13881463 - L3 LINE CR1 -79 1498 1263 * 663 260 141 9 chr3 204155680 204156070 -13881088 + L2 LINE L2 2657 3096 -217 1917 60 0 4 chr3 204156858 204157092 -13880066 - AluY SINE Alu 0 311 79 292 183 83 58 chr3 204157125 204157245 -13879913 + LTR67 LTR ERVL 435 557 0 2281 119 3 0 chr3 204157387 204157697 -13879461 - AluSq SINE Alu -2 311 1 785 300 91 40 chr3 204157707 204158301 -13878857 + L2 LINE L2 1751 2374 -940 1305 161 54 166 chr3 204158308 204158742 -13878416 - L1MB4 LINE L1 -27 6153 5672 2642 132 31 19 chr3 204158742 204159165 -13877993 - MSTC LTR MaLR 0 428 1 4813 234 98 42 chr3 204159165 204160729 -13876429 - MSTC-int LTR MaLR 0 1651 1 286 139 0 0 chr3 204160731 204160774 -13876384 - MSTC LTR MaLR -2 426 384 1305 161 54 166 chr3 204160774 204160897 -13876261 - L1MB4 LINE L1 -508 5672 5647 371 171 106 81 chr3 204160876 204160999 -13876159 - L1M3a LINE L1 -5068 1497 1372 * 480 228 65 32 chr3 204161002 204161222 -13875936 - L1M3a LINE L1 -5708 938 489 180 262 0 0 chr3 204161898 204161940 -13875218 - MIR3 SINE MIR -3 205 164 347 291 10 0 chr3 204162569 204162672 -13874486 - MIR3 SINE MIR -12 196 93 385 310 183 0 chr3 204162696 204162893 -13874265 + MIR SINE MIR 20 252 -10 394 283 43 59 chr3 204163409 204163596 -13873562 + MIR3 SINE MIR 8 191 -17 2207 262 154 8 chr3 204164013 204165092 -13872066 - L2 LINE L2 0 3313 2074 198 279 81 27 chr3 204165090 204165201 -13871957 - MIR SINE MIR -76 132 16 * 700 278 6 0 chr3 204166914 204167090 -13870068 + MER5B DNA MER1_type 2 178 0 207 338 0 12 chr3 204167098 204167178 -13869980 + MIR SINE MIR 17 95 -167 1432 159 43 0 chr3 204167183 204167459 -13869699 - L1MC3 LINE L1 0 7785 7498 1846 188 72 24 chr3 204167459 204167721 -13869437 - MLT1C LTR MaLR 0 467 176 2238 115 3 0 chr3 204167721 204168025 -13869133 - AluSx SINE Alu -7 305 1 1846 188 72 24 chr3 204168025 204168176 -13868982 - MLT1C LTR MaLR -291 176 34 3982 192 54 4 chr3 204168185 204168981 -13868177 - L1MC3 LINE L1 -280 7505 6670 324 230 151 29 chr3 204168995 204169134 -13868024 + MIR SINE MIR 107 262 0 21 0 0 0 chr3 204170083 204170104 -13867054 + AT_rich Low_complexity Low_complexity 1 21 0 205 309 0 15 chr3 204170135 204170203 -13866955 + L3 LINE CR1 1403 1469 -108 182 384 14 0 chr3 204171039 204171112 -13866046 - MIR SINE MIR -97 165 92 248 227 80 0 chr3 204171855 204171930 -13865228 - MIR SINE MIR -93 115 35 185 231 138 15 chr3 204172020 204172085 -13865073 + L3 LINE CR1 598 670 -907 650 290 50 16 chr3 204172256 204172480 -13864678 - MIR SINE MIR -12 250 19 2292 96 0 6 chr3 204173064 204173376 -13863782 - AluSx SINE Alu -2 310 1 426 232 0 24 chr3 204173863 204174005 -13863153 + MIR SINE MIR 20 154 -62 196 211 35 18 chr3 204174123 204174180 -13862978 + MIR3 SINE MIR 112 169 -39 401 345 29 72 chr3 204174691 204174998 -13862160 + L2 LINE L2 2979 3272 0 415 320 23 40 chr3 204175092 204175267 -13861891 - MIR3 SINE MIR -18 190 19 454 231 45 64 chr3 204175990 204176146 -13861012 + L2 LINE L2 3160 3312 -1 471 263 7 53 chr3 204176149 204176301 -13860857 + MIR3 SINE MIR 61 205 -3 420 322 107 12 chr3 204176367 204176599 -13860559 + MIR SINE MIR 2 249 -13 369 286 92 8 chr3 204176789 204176908 -13860250 - MIR SINE MIR -83 179 51 2765 3 0 0 chr3 204176919 204177224 -13859934 - AluYa5 SINE Alu -6 305 1 468 249 318 17 chr3 204177224 204177457 -13859701 + LTR50 LTR ERVL 1 303 -492 671 213 209 0 chr3 204177464 204177699 -13859459 + LTR50 LTR ERVL 502 785 -10 393 299 94 107 chr3 204178187 204178635 -13858523 + L2 LINE L2 2831 3272 0 280 333 90 17 chr3 204178700 204178877 -13858281 - MIR3 SINE MIR -1 207 18 677 206 150 31 chr3 204179447 204179607 -13857551 + MER5A DNA MER1_type 4 182 -7 418 239 82 63 chr3 204179632 204179791 -13857367 + MER5B DNA MER1_type 17 178 0 340 303 19 65 chr3 204179792 204179947 -13857211 - MIR3 SINE MIR -49 159 12 1081 73 0 0 chr3 204180745 204180882 -13856276 + AluSc SINE Alu 161 297 -12 184 343 87 33 chr3 204181727 204181969 -13855189 + L2 LINE L2 2455 2709 -605 1307 292 89 39 chr3 204182604 204183118 -13854040 + MLT1K LTR MaLR 47 586 -2 517 318 46 17 chr3 204183275 204183448 -13853710 - MIR3 SINE MIR -21 187 10 219 161 48 16 chr3 204184528 204184590 -13852568 + GA-rich Low_complexity Low_complexity 1 64 0 393 365 143 6 chr3 204184692 204185188 -13851970 + L2 LINE L2 1937 2500 -814 181 349 72 24 chr3 204185584 204185750 -13851408 + L2 LINE L2 2507 2680 -634 395 232 0 36 chr3 204185757 204185869 -13851289 + MER5A DNA MER1_type 81 188 -1 490 269 50 7 chr3 204186984 204187125 -13850033 - MIR3 SINE MIR -25 183 37 293 288 166 14 chr3 204187735 204187874 -13849284 + L3 LINE CR1 1244 1403 -174 353 390 6 12 chr3 204189637 204189809 -13847349 + MIR3 SINE MIR 31 201 -7 203 280 84 56 chr3 204189833 204189940 -13847218 - MIR SINE MIR -65 143 34 434 254 201 0 chr3 204190808 204190942 -13846216 - MIR3 SINE MIR -11 197 37 325 360 76 17 chr3 204191627 204191640 -13845518 - MIR3 SINE MIR -7 201 190 1969 104 7 33 chr3 204191640 204191939 -13845219 + AluSp SINE Alu 1 291 -22 325 360 76 17 chr3 204191939 204192097 -13845061 - MIR3 SINE MIR -18 190 20 1063 93 74 19 chr3 204192634 204192796 -13844362 + THE1B LTR MaLR 194 364 0 1900 151 0 13 chr3 204193210 204193514 -13843644 - AluSx SINE Alu -12 300 1 255 325 55 49 chr3 204194388 204194551 -13842607 + L2 LINE L2 2643 2806 -508 2090 122 0 0 chr3 204194808 204195111 -13842047 + AluSx SINE Alu 1 303 -9 341 243 135 27 chr3 204196272 204196383 -13840775 + MER91C DNA MER1_type 10 132 -8 478 238 77 46 chr3 204197099 204197262 -13839896 - MIR3 SINE MIR 0 208 46 22 0 0 0 chr3 204197769 204197791 -13839367 + AT_rich Low_complexity Low_complexity 1 22 0 180 111 0 0 chr3 204200017 204200044 -13837114 + (GA)n Simple_repeat Simple_repeat 2 28 0 253 274 157 26 chr3 204200202 204200355 -13836803 - MIR3 SINE MIR -3 205 33 322 252 24 71 chr3 204200553 204200680 -13836478 + L2 LINE L2 3192 3312 -1 206 219 49 0 chr3 204200951 204200992 -13836166 - MIR SINE MIR -58 204 162 2209 106 0 0 chr3 204201624 204201936 -13835222 - AluSx SINE Alu 0 312 1 321 258 196 10 chr3 204202228 204202325 -13834833 - MIR3 SINE MIR -50 158 44 232 320 10 41 chr3 204202720 204202817 -13834341 - L3 LINE CR1 -74 1503 1410 814 198 68 6 chr3 204203188 204203365 -13833793 - MER5A DNA MER1_type 0 189 2 300 281 12 0 chr3 204203407 204203489 -13833669 - MER5B DNA MER1_type -66 112 30 2126 111 0 3 chr3 204203540 204203838 -13833320 - AluSq SINE Alu -16 297 1 338 331 43 7 chr3 204204426 204204565 -13832593 + MIR3 SINE MIR 23 166 -42 208 346 90 0 chr3 204204563 204204641 -13832517 - L3 LINE CR1 -7 1570 1486 * 500 275 96 35 chr3 204204783 204205012 -13832146 - L3 LINE CR1 -129 1448 1206 217 273 73 82 chr3 204205418 204205528 -13831630 + MER5A DNA MER1_type 78 186 -3 209 261 100 24 chr3 204205560 204205690 -13831468 - MIR SINE MIR -61 147 8 3507 70 11 4 chr3 204206137 204206595 -13830563 + L1PA8 LINE L1 5709 6169 -3 488 249 164 64 chr3 204206875 204207334 -13829824 - L2 LINE L2 -202 3070 2553 2316 206 70 39 chr3 204207572 204208170 -13828988 + MLT1E2 LTR MaLR 3 619 -7 471 196 0 219 chr3 204208754 204208973 -13828185 - MER45A DNA AcHobo -2 176 6 278 312 182 41 chr3 204209510 204209655 -13827503 - MIR SINE MIR -62 146 30 2014 172 5 57 chr3 204209906 204209942 -13827216 + MER57A LTR ERV1 1 37 -366 1442 172 7 54 chr3 204209942 204210263 -13826895 - AluJo SINE Alu 0 307 1 2014 172 5 57 chr3 204210263 204210359 -13826799 + MER57A LTR ERV1 37 136 -267 5315 148 28 26 chr3 204210359 204211280 -13825878 + MER49 LTR ERV1 1 923 0 2014 172 5 57 chr3 204211280 204211570 -13825588 + MER57A LTR ERV1 136 403 0 260 299 60 0 chr3 204211592 204211659 -13825499 + L2 LINE L2 3144 3214 -58 263 376 19 25 chr3 204211784 204211929 -13825229 - MIR3 SINE MIR -50 158 13 701 238 58 18 chr3 204211929 204212152 -13825006 + MER106A DNA MER1_type 1 232 -4 263 376 19 25 chr3 204212152 204212163 -13824995 - MIR3 SINE MIR -195 13 3 394 287 29 44 chr3 204212437 204212573 -13824585 + L2 LINE L2 2860 2993 -279 766 225 125 5 chr3 204213502 204213702 -13823456 - MIR SINE MIR -4 258 35 556 309 27 0 chr3 204213792 204213941 -13823217 - MIR SINE MIR -107 155 3 3363 236 11 18 chr3 204213991 204214814 -13822344 + L1ME2 LINE L1 5333 6149 -15 207 191 24 0 chr3 204214931 204214973 -13822185 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 187 338 92 28 chr3 204215683 204215825 -13821333 - L2 LINE L2 -18 3254 3104 467 259 46 0 chr3 204215882 204215990 -13821168 + L2 LINE L2 3189 3301 -12 404 283 97 7 chr3 204217503 204217648 -13819510 + MIR3 SINE MIR 33 190 -18 461 206 75 9 chr3 204218167 204218274 -13818884 - MIR3 SINE MIR -5 203 90 281 271 0 47 chr3 204219626 204219711 -13817447 - MIR SINE MIR -112 150 70 2098 287 33 15 chr3 204219954 204220567 -13816591 + MLT2E LTR ERVL 1 624 -4 244 303 11 11 chr3 204220575 204220664 -13816494 + MLT1-int LTR MaLR 5 93 -1278 1769 160 0 40 chr3 204220778 204221149 -13816009 + AluJb SINE Alu 1 358 0 307 248 45 129 chr3 204221149 204221363 -13815795 + MLT1-int LTR MaLR 400 586 -785 2187 111 0 0 chr3 204221363 204221660 -13815498 + AluSg SINE Alu 1 297 -13 307 248 45 129 chr3 204221660 204221731 -13815427 + MLT1-int LTR MaLR 586 661 -710 728 253 52 102 chr3 204222693 204222785 -13814373 + MLT1H LTR MaLR 127 222 -327 2734 161 6 6 chr3 204222785 204223270 -13813888 + MER31A LTR ERV1 1 485 0 728 253 52 102 chr3 204223270 204223616 -13813542 + MLT1H LTR MaLR 222 543 -6 291 352 112 6 chr3 204223681 204223860 -13813298 - L3 LINE CR1 -3 1574 1377 395 282 89 25 chr3 204223869 204224149 -13813009 + L1ME4a LINE L1 5630 5927 -194 181 143 0 0 chr3 204224262 204224297 -13812861 - L3 LINE CR1 -211 1366 1332 426 287 0 63 chr3 204224948 204224980 -13812178 + MIR SINE MIR 87 119 -143 1895 174 23 74 chr3 204224980 204225467 -13811691 + MLT1C LTR MaLR 4 465 -2 426 287 0 63 chr3 204225467 204225608 -13811550 + MIR SINE MIR 119 249 -13 2065 133 10 0 chr3 204226506 204226806 -13810352 + AluSg SINE Alu 1 303 -7 246 311 22 0 chr3 204226931 204227021 -13810137 - MIR SINE MIR -84 124 33 181 250 167 0 chr3 204227130 204227178 -13809980 - MIR SINE MIR -106 102 47 819 229 86 50 chr3 204228076 204228356 -13808802 - MER63 DNA MER1_type -4 1058 769 919 247 105 59 chr3 204228553 204229010 -13808148 + L2 LINE L2 2836 3313 0 433 275 8 8 chr3 204229648 204229779 -13807379 - MIR3 SINE MIR -8 200 70 209 256 171 0 chr3 204229828 204229910 -13807248 - L2 LINE L2 -31 3241 3146 441 324 88 6 chr3 204230678 204230848 -13806310 - MIR SINE MIR -66 196 13 240 275 13 67 chr3 204230894 204231043 -13806115 - MIR SINE MIR -71 191 51 234 259 0 0 chr3 204231592 204231650 -13805508 - Charlie8 DNA MER1_type -1005 1412 1355 562 290 177 11 chr3 204231655 204232034 -13805124 - Charlie8 DNA MER1_type -1900 517 76 367 345 53 10 chr3 204232634 204232840 -13804318 - L2 LINE L2 -556 2758 2544 402 288 78 16 chr3 204233470 204233661 -13803497 - MIR3 SINE MIR -3 205 3 291 316 18 18 chr3 204234319 204234433 -13802725 - MIR3 SINE MIR -14 194 81 2193 108 16 3 chr3 204234799 204235104 -13802054 + AluSc SINE Alu 1 309 0 186 246 35 35 chr3 204235625 204235682 -13801476 - MIR SINE MIR -118 90 34 952 197 16 22 chr3 204236884 204237067 -13800091 + MER20 DNA MER1_type 37 218 -1 435 320 56 6 chr3 204237258 204237436 -13799722 + MIR SINE MIR 20 206 -56 189 300 22 33 chr3 204238755 204238845 -13798313 + MIR3 SINE MIR 104 192 -16 607 314 52 5 chr3 204240066 204240276 -13796882 + MIR SINE MIR 31 250 -12 328 273 123 31 chr3 204240459 204240686 -13796472 + L1ME4a LINE L1 5873 6120 -1 228 373 9 0 chr3 204241906 204242016 -13795142 - MIR3 SINE MIR -23 185 75 503 289 0 0 chr3 204242150 204242278 -13794880 - MER5B DNA MER1_type -46 132 5 251 349 45 8 chr3 204242312 204242444 -13794714 + MIR SINE MIR 3 139 -123 245 302 78 84 chr3 204242599 204242943 -13794215 - L2 LINE L2 -4 3268 2927 279 0 0 0 chr3 204243349 204243380 -13793778 + (TG)n Simple_repeat Simple_repeat 2 32 0 187 122 41 20 chr3 204244390 204244439 -13792719 + CT-rich Low_complexity Low_complexity 2 51 0 297 0 0 0 chr3 204244594 204244627 -13792531 + (TG)n Simple_repeat Simple_repeat 2 34 0 198 0 0 0 chr3 204244627 204244649 -13792509 + (GA)n Simple_repeat Simple_repeat 2 23 0 336 256 12 0 chr3 204245326 204245408 -13791750 - MIR SINE MIR -102 160 78 591 226 95 21 chr3 204245439 204245629 -13791529 - MIR SINE MIR -6 256 53 207 222 48 0 chr3 204245794 204245857 -13791301 + MIR SINE MIR 79 144 -118 185 227 23 0 chr3 204246923 204246967 -13790191 + MIR SINE MIR 74 118 -90 229 343 0 28 chr3 204247717 204247825 -13789333 - MER5B DNA MER1_type -45 133 29 284 197 0 33 chr3 204247833 204247894 -13789264 + HsTC2 DNA Tc2 1838 1896 -2 1853 164 10 0 chr3 204248191 204248484 -13788674 + MLT1B LTR MaLR 1 296 -94 556 232 23 14 chr3 204248487 204248662 -13788496 + Ricksha DNA DNA 4 285 -969 * 8919 136 48 17 chr3 204248661 204250066 -13787092 + Ricksha DNA DNA 1690 3145 -101 2430 73 0 20 chr3 204250066 204250369 -13786789 - AluSq SINE Alu -16 297 1 8919 136 48 17 chr3 204250369 204250449 -13786709 + Ricksha DNA DNA 3145 3221 -25 586 187 6 10 chr3 204250449 204250563 -13786595 + MLT1B LTR MaLR 277 390 0 432 252 87 16 chr3 204250789 204250916 -13786242 - MLT1L LTR MaLR -174 441 306 261 310 11 11 chr3 204250937 204251024 -13786134 - MLT1J LTR MaLR -331 180 94 241 288 100 18 chr3 204251105 204251275 -13785883 - MER113 DNA MER1_type? -103 418 235 2060 144 0 0 chr3 204251293 204251584 -13785574 + AluSx SINE Alu 2 292 -20 2024 130 3 13 chr3 204251609 204251909 -13785249 - AluSx SINE Alu -15 297 1 21 57 0 0 chr3 204251955 204251990 -13785168 + AT_rich Low_complexity Low_complexity 1 35 0 2589 201 14 51 chr3 204252048 204252619 -13784539 + MLT2B3 LTR ERVL 5 554 0 225 65 0 0 chr3 204252803 204252834 -13784324 + (TG)n Simple_repeat Simple_repeat 2 32 0 276 263 88 26 chr3 204253087 204253201 -13783957 - MIR3 SINE MIR -73 135 15 3069 118 44 35 chr3 204253214 204253562 -13783596 - L1MA8 LINE L1 -2 6289 5933 2264 154 40 30 chr3 204253562 204253757 -13783401 + MSTB1 LTR MaLR 1 193 -239 1982 102 67 3 chr3 204253757 204254040 -13783118 + AluSx SINE Alu 1 301 -11 2264 154 40 30 chr3 204254040 204254272 -13782886 + MSTB1 LTR MaLR 193 432 0 3069 118 44 35 chr3 204254272 204254489 -13782669 - L1MA8 LINE L1 -358 5933 5719 227 93 23 0 chr3 204255205 204255248 -13781910 + (TTTTG)n Simple_repeat Simple_repeat 1 44 0 1612 136 38 0 chr3 204255251 204255486 -13781672 - AluSx SINE Alu -36 276 33 2048 155 25 48 chr3 204255510 204255909 -13781249 + MLT1B LTR MaLR 1 390 0 344 279 8 0 chr3 204255974 204256096 -13781062 + CT-rich Low_complexity Low_complexity 2 124 0 767 141 43 0 chr3 204256108 204256271 -13780887 + CT-rich Low_complexity Low_complexity 4 173 0 230 258 34 45 chr3 204256290 204256379 -13780779 - 7SLRNA srpRNA srpRNA -1 319 232 199 289 193 27 chr3 204256580 204256953 -13780205 + L2 LINE L2 470 904 -2410 681 277 32 87 chr3 204257179 204257558 -13779600 + L2 LINE L2 2949 3306 -7 445 283 63 21 chr3 204257906 204258097 -13779061 - L2 LINE L2 -510 2804 2606 631 204 160 39 chr3 204258102 204258308 -13778850 - ORSL DNA AcHobo -3 272 42 359 234 54 18 chr3 204258607 204258718 -13778440 + MER5B DNA MER1_type 2 116 -62 2094 83 25 4 chr3 204258812 204259136 -13778022 + AluY SINE Alu 1 330 0 32 57 0 0 chr3 204259531 204259584 -13777574 + AT_rich Low_complexity Low_complexity 1 53 0 10984 170 52 32 chr3 204259585 204260062 -13777096 - L1MA8 LINE L1 -5 6286 5820 348 24 0 0 chr3 204260062 204260103 -13777055 + (TG)n Simple_repeat Simple_repeat 2 42 0 10984 170 52 32 chr3 204260103 204261442 -13775716 - L1MA8 LINE L1 -471 5820 4509 1410 171 99 60 chr3 204261442 204261776 -13775382 + MER7A DNA MER2_type 2 346 0 10984 170 52 32 chr3 204261776 204261824 -13775334 - L1MA8 LINE L1 -1782 4509 4463 2023 130 23 13 chr3 204261824 204262132 -13775026 - AluSx SINE Alu -1 311 1 10984 170 52 32 chr3 204262132 204263628 -13773530 - L1MA8 LINE L1 -1828 4463 2854 188 282 51 51 chr3 204263988 204264066 -13773092 - MIR SINE MIR -122 140 63 207 276 8 31 chr3 204264742 204264869 -13772289 + CT-rich Low_complexity Low_complexity 1 124 0 207 0 0 0 chr3 204264881 204264904 -13772254 + (TC)n Simple_repeat Simple_repeat 1 23 0 230 263 9 26 chr3 204264917 204265031 -13772127 + CT-rich Low_complexity Low_complexity 1 112 0 216 0 0 0 chr3 204265042 204265066 -13772092 + (TC)n Simple_repeat Simple_repeat 1 24 0 357 273 0 29 chr3 204265079 204265251 -13771907 + CT-rich Low_complexity Low_complexity 2 168 0 240 279 0 62 chr3 204265288 204265467 -13771691 + CT-rich Low_complexity Low_complexity 1 168 0 213 298 31 12 chr3 204265486 204265647 -13771511 + (CATCC)n Simple_repeat Simple_repeat 3 166 0 243 180 0 16 chr3 204265764 204265825 -13771333 - L1MD3 LINE L1 -82 7913 7854 462 187 37 0 chr3 204265834 204265941 -13771217 - L1MD1 LINE L1 -3 6239 6129 32 26 0 0 chr3 204266046 204266085 -13771073 + AT_rich Low_complexity Low_complexity 1 39 0 188 265 193 12 chr3 204266330 204266413 -13770745 - L3 LINE CR1 -108 1469 1372 348 235 69 10 chr3 204266419 204266521 -13770637 + L2 LINE L2 3206 3313 0 257 236 0 42 chr3 204267260 204267332 -13769826 + MIR SINE MIR 82 150 -58 369 222 120 0 chr3 204267442 204267550 -13769608 + MER112 DNA MER1_type 12 132 -128 873 234 52 9 chr3 204267551 204267702 -13769456 + L1ME1 LINE L1 4789 4955 -1191 183 114 0 0 chr3 204267702 204267737 -13769421 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 873 234 52 9 chr3 204267737 204267816 -13769342 + L1ME1 LINE L1 4955 5029 -1117 * 906 250 64 35 chr3 204267804 204268148 -13769010 + L1ME1 LINE L1 5804 6157 -9 2186 116 0 3 chr3 204268753 204269047 -13768111 + AluSx SINE Alu 1 293 -19 256 333 42 54 chr3 204270319 204270487 -13766671 + MER5A DNA MER1_type 1 166 -23 1081 221 0 0 chr3 204270531 204270726 -13766432 - AluJb SINE Alu -32 280 86 342 0 0 0 chr3 204270742 204270780 -13766378 + (TG)n Simple_repeat Simple_repeat 1 38 0 1610 173 53 0 chr3 204270781 204271047 -13766111 - AluSx SINE Alu -32 280 1 183 365 37 9 chr3 204271104 204271211 -13765947 + L2 LINE L2 2716 2825 -489 371 308 17 8 chr3 204272866 204272983 -13764175 - L2 LINE L2 -5 3267 3150 2105 97 4 0 chr3 204273997 204274265 -13762893 + AluSx SINE Alu 12 280 -32 228 35 0 0 chr3 204274268 204274297 -13762861 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 870 290 31 25 chr3 204274404 204274721 -13762437 + L2 LINE L2 2399 2717 -597 256 316 11 0 chr3 204275284 204275379 -13761779 - MIR SINE MIR -1 261 166 4009 105 18 91 chr3 204275387 204276103 -13761055 - MER4A LTR ERV1 0 664 1 853 244 71 39 chr3 204276115 204276685 -13760473 - L2 LINE L2 -67 3246 2659 1557 172 197 16 chr3 204276685 204277005 -13760153 + MER83B LTR ERV1 1 378 0 2940 275 68 14 chr3 204277007 204278074 -13759084 - L2 LINE L2 -654 2660 1536 2866 156 15 0 chr3 204278079 204278534 -13758624 - MLT1C LTR MaLR -5 462 1 1335 296 47 13 chr3 204278534 204279062 -13758096 - L2 LINE L2 -1774 1540 995 519 220 78 7 chr3 204279060 204279201 -13757957 - MIR SINE MIR -90 172 22 * 248 330 60 11 chr3 204279663 204279845 -13757313 + L3 LINE CR1 1381 1571 -6 231 224 0 0 chr3 204280024 204280082 -13757076 - L2 LINE L2 0 3272 3215 334 212 30 50 chr3 204280535 204280634 -13756524 + L2 LINE L2 1026 1122 -2192 181 286 71 0 chr3 204280952 204281008 -13756150 + L3b LINE CR1 1524 1583 0 22 35 0 0 chr3 204281805 204281834 -13755324 + AT_rich Low_complexity Low_complexity 1 29 0 1100 109 0 0 chr3 204282011 204282197 -13754961 + AluSg/x SINE Alu 137 322 0 821 305 26 41 chr3 204282198 204282359 -13754799 + HAL1 LINE L1 1154 1316 -1191 2225 103 0 23 chr3 204282359 204282661 -13754497 - AluSg1 SINE Alu -14 295 1 821 305 26 41 chr3 204282661 204282991 -13754167 + HAL1 LINE L1 1316 1638 -869 444 214 0 132 chr3 204283487 204283560 -13753598 + MER5B DNA MER1_type 38 80 -98 1896 165 0 7 chr3 204283560 204283851 -13753307 + AluJo SINE Alu 12 300 -12 444 214 0 132 chr3 204283851 204283936 -13753222 + MER5B DNA MER1_type 80 175 -3 1802 140 84 34 chr3 204284596 204284952 -13752206 - THE1C LTR MaLR -1 374 1 242 299 12 11 chr3 204285666 204285768 -13751390 - MER5B DNA MER1_type -68 121 19 224 284 59 10 chr3 204286433 204286535 -13750623 + MIR3 SINE MIR 54 160 -48 285 284 21 84 chr3 204286535 204286725 -13750433 - MER5B DNA MER1_type 0 178 1 2183 145 0 0 chr3 204287091 204287402 -13749756 - AluSq SINE Alu -2 311 1 270 207 35 0 chr3 204287635 204287693 -13749465 - MIR SINE MIR -61 147 88 279 314 57 9 chr3 204288431 204288536 -13748622 - MER5B DNA MER1_type -68 110 1 419 274 57 0 chr3 204288536 204288660 -13748498 - MIR3 SINE MIR -48 160 30 234 254 127 45 chr3 204288804 204288914 -13748244 - MIR SINE MIR -74 134 16 2441 86 0 6 chr3 204289762 204290076 -13747082 - AluSx SINE Alu 0 312 1 270 335 141 22 chr3 204290356 204290583 -13746575 + L3 LINE CR1 1216 1469 -108 2416 104 0 0 chr3 204291644 204291951 -13745207 + AluSc SINE Alu 3 309 0 897 243 44 5 chr3 204292218 204292424 -13744734 - MER58A DNA MER1_type 0 224 11 235 279 62 4 chr3 204292903 204293032 -13744126 + MIR SINE MIR 66 253 -9 232 351 61 30 chr3 204294033 204294198 -13742960 - L3 LINE CR1 -5 1572 1403 2098 119 7 7 chr3 204294451 204294745 -13742413 + AluSq SINE Alu 1 294 -19 210 167 0 0 chr3 204295366 204295402 -13741756 + A-rich Low_complexity Low_complexity 6 41 0 490 329 98 21 chr3 204295737 204296123 -13741035 + HAL1 LINE L1 1140 1555 -952 2220 99 3 0 chr3 204296702 204297016 -13740142 + AluSq SINE Alu 1 315 0 2212 278 90 45 chr3 204297028 204298519 -13738639 + L1ME3A LINE L1 3527 5159 -1011 2250 109 3 6 chr3 204298519 204298832 -13738326 - AluSp SINE Alu -1 312 1 2212 278 90 45 chr3 204298832 204299663 -13737495 + L1ME3A LINE L1 5159 5951 -219 3535 147 35 19 chr3 204299943 204300027 -13737131 - L1MA8 LINE L1 -388 5903 5822 2296 100 0 13 chr3 204300027 204300337 -13736821 - AluSg1 SINE Alu -3 306 1 3535 147 35 19 chr3 204300337 204301262 -13735896 - L1MA8 LINE L1 -469 5822 4877 1698 164 62 29 chr3 204301248 204301589 -13735569 + L1MA7 LINE L1 5915 6266 -25 * 2165 110 10 3 chr3 204301599 204301899 -13735259 + AluSc SINE Alu 1 302 -7 25 31 0 0 chr3 204302619 204302651 -13734507 + AT_rich Low_complexity Low_complexity 1 32 0 2460 97 0 0 chr3 204302747 204303057 -13734101 + AluSx SINE Alu 1 310 -2 1024 285 146 13 chr3 204303583 204303959 -13733199 - MLT1K LTR MaLR -23 565 140 258 252 87 17 chr3 204304076 204304191 -13732967 - L2 LINE L2 0 3313 3191 310 288 14 72 chr3 204304456 204304595 -13732563 - HAL1b LINE L1 -862 486 356 348 330 37 72 chr3 204306214 204306243 -13730915 - L2 LINE L2 -20 3252 3224 2597 148 14 27 chr3 204306243 204306683 -13730475 - Tigger2a DNA MER2_type 0 434 1 348 330 37 72 chr3 204306683 204307001 -13730157 - L2 LINE L2 -48 3224 2917 432 268 232 18 chr3 204307006 204307174 -13729984 + MIR SINE MIR 21 224 -38 694 154 24 18 chr3 204307706 204307875 -13729283 + CT-rich Low_complexity Low_complexity 3 172 0 234 339 89 18 chr3 204307885 204307997 -13729161 - L2 LINE L2 -15 3257 3138 1990 160 33 8 chr3 204308400 204308768 -13728390 + L1MB8 LINE L1 5797 6173 -5 1349 148 14 14 chr3 204308877 204309094 -13728064 + MER20 DNA MER1_type 3 219 0 378 322 138 41 chr3 204309275 204310469 -13726689 - L2 LINE L2 -711 2603 1294 327 49 0 0 chr3 204310546 204310587 -13726571 + (TG)n Simple_repeat Simple_repeat 2 42 0 191 325 12 12 chr3 204310838 204310921 -13726237 - L2 LINE L2 -2497 817 735 218 245 92 10 chr3 204311366 204311464 -13725694 - L3 LINE CR1 -7 1570 1465 204 314 0 39 chr3 204311640 204311742 -13725416 - L3 LINE CR1 -207 1370 1273 399 317 118 6 chr3 204312042 204312203 -13724955 - MIR3 SINE MIR -12 196 18 185 362 35 17 chr3 204313510 204313626 -13723532 + MIR SINE MIR 21 138 -70 287 256 90 75 chr3 204313637 204313770 -13723388 + MER5B DNA MER1_type 29 163 -26 233 259 0 0 chr3 204314141 204314195 -13722963 - MIR SINE MIR -111 151 98 2204 223 21 58 chr3 204314654 204315125 -13722033 - L1MCa LINE L1 -5839 587 141 495 17 0 0 chr3 204315125 204315184 -13721974 + L1PA6 LINE L1 6092 6150 -4 2204 223 21 58 chr3 204315184 204315294 -13721864 - L1MCa LINE L1 -6285 141 28 344 344 8 0 chr3 204315346 204315474 -13721684 - LTR16C LTR ERVL 0 491 363 352 308 154 0 chr3 204316372 204316541 -13720617 + MER117 DNA MER1_type 1 195 -2 269 238 162 29 chr3 204316729 204316834 -13720324 + MIR3 SINE MIR 90 208 0 216 0 0 0 chr3 204316856 204316880 -13720278 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 201 250 0 0 chr3 204316929 204316969 -13720189 + polypyrimidine Low_complexity Low_complexity 2 41 0 4072 185 70 28 chr3 204317019 204317846 -13719312 + MER21B LTR ERV1 2 863 0 484 246 101 62 chr3 204318135 204318233 -13718925 + MIR3 SINE MIR 11 121 -87 2003 147 6 10 chr3 204318233 204318547 -13718611 - AluSq SINE Alu 0 313 1 484 246 101 62 chr3 204318547 204318627 -13718531 + MIR3 SINE MIR 121 196 -12 183 364 8 25 chr3 204318881 204318999 -13718159 - L3 LINE CR1 -2 1575 1460 233 328 9 35 chr3 204319167 204319283 -13717875 + MIR SINE MIR 7 119 -89 214 236 79 56 chr3 204319392 204319481 -13717677 + L2 LINE L2 3138 3228 -44 4283 129 169 97 chr3 204319482 204320712 -13716446 - pTR5 LTR ERV1 0 1522 6 195 298 81 85 chr3 204321887 204322122 -13715036 + L2 LINE L2 2838 3071 -201 217 150 0 33 chr3 204322166 204322226 -13714932 + (TA)n Simple_repeat Simple_repeat 2 59 0 33 25 0 0 chr3 204322231 204322271 -13714887 + AT_rich Low_complexity Low_complexity 1 40 0 362 278 40 8 chr3 204322858 204322984 -13714174 + MIR SINE MIR 40 169 -93 2250 223 58 4 chr3 204324221 204324700 -13712458 + MLT1D LTR MaLR 1 505 0 308 265 15 0 chr3 204325659 204325727 -13711431 + MIR SINE MIR 81 149 -59 555 292 147 19 chr3 204325727 204326039 -13711119 + HAL1 LINE L1 8 359 -2148 630 279 93 78 chr3 204326040 204326672 -13710486 + HAL1 LINE L1 379 1020 -1487 323 325 46 46 chr3 204327013 204327296 -13709862 - ERVL LTR ERVL -431 5333 5051 5604 94 4 3 chr3 204327305 204328048 -13709110 - L1PA13 LINE L1 0 6163 5420 300 221 81 35 chr3 204328162 204328248 -13708910 - ERVL LTR ERVL -825 4939 4850 398 276 97 7 chr3 204328970 204329115 -13708043 + MIR3 SINE MIR 33 190 -18 447 206 75 9 chr3 204329634 204329741 -13707417 - MIR3 SINE MIR -5 203 90 268 271 0 47 chr3 204331096 204331181 -13705977 - MIR SINE MIR -112 150 70 2324 286 33 15 chr3 204331424 204332037 -13705121 + MLT2E LTR ERVL 1 624 -4 254 303 11 11 chr3 204332045 204332134 -13705024 + MLT1D-int LTR MaLR 5 93 -1278 1861 160 0 40 chr3 204332248 204332619 -13704539 + AluJb SINE Alu 1 358 0 302 279 51 71 chr3 204332619 204332816 -13704342 + MLT1D-int LTR MaLR 400 592 -779 2166 116 0 3 chr3 204332833 204333127 -13704031 + AluSx SINE Alu 1 293 -19 193 355 100 20 chr3 204333470 204333670 -13703488 - L3 LINE CR1 -672 905 690 305 333 42 54 chr3 204334399 204334567 -13702591 + MER5A DNA MER1_type 1 166 -23 1075 221 0 0 chr3 204334611 204334806 -13702352 - AluJb SINE Alu -32 280 86 342 0 0 0 chr3 204334822 204334860 -13702298 + (TG)n Simple_repeat Simple_repeat 1 38 0 1569 177 53 0 chr3 204334861 204335127 -13702031 - AluSx SINE Alu -32 280 1 217 288 264 32 chr3 204336816 204336941 -13700217 + MIR SINE MIR 23 176 -86 407 308 17 8 chr3 204336946 204337063 -13700095 - L2 LINE L2 -5 3267 3150 2085 94 4 0 chr3 204338079 204338345 -13698813 + AluSx SINE Alu 14 280 -32 189 74 0 0 chr3 204338350 204338377 -13698781 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 954 290 31 25 chr3 204338484 204338801 -13698357 + L2 LINE L2 2399 2717 -597 279 316 11 0 chr3 204339364 204339459 -13697699 - MIR SINE MIR -1 261 166 4074 109 19 93 chr3 204339467 204340184 -13696974 - MER4A LTR ERV1 0 664 1 643 267 56 71 chr3 204340196 204340782 -13696376 - L2 LINE L2 -67 3246 2659 1552 172 197 16 chr3 204340782 204341102 -13696056 + MER83B LTR ERV1 1 378 0 3250 273 69 15 chr3 204341104 204342171 -13694987 - L2 LINE L2 -654 2660 1536 2866 156 15 0 chr3 204342176 204342631 -13694527 - MLT1C LTR MaLR -5 462 1 1492 296 47 13 chr3 204342631 204343159 -13693999 - L2 LINE L2 -1774 1540 995 567 220 78 7 chr3 204343157 204343298 -13693860 - MIR SINE MIR -90 172 22 * 301 330 60 11 chr3 204343760 204343942 -13693216 + L3 LINE CR1 1381 1571 -6 246 254 0 0 chr3 204344121 204344184 -13692974 - L2 LINE L2 0 3272 3210 362 212 30 50 chr3 204344632 204344731 -13692427 + L2 LINE L2 1026 1122 -2192 195 286 71 0 chr3 204345049 204345105 -13692053 + L3b LINE CR1 1524 1583 0 22 35 0 0 chr3 204345902 204345931 -13691227 + AT_rich Low_complexity Low_complexity 1 29 0 848 136 0 21 chr3 204346089 204346229 -13690929 + AluSg/x SINE Alu 115 251 -59 424 254 10 72 chr3 204347865 204348058 -13689100 - MLT1C LTR MaLR -240 227 47 14950 24 1 1 chr3 204348067 204350473 -13686685 - L1PA3 LINE L1 -68 6087 3680 885 78 0 0 chr3 204350574 204350690 -13686468 + HERVH LTR ERV1 3879 3994 -3719 * 4463 147 0 3 chr3 204350680 204351354 -13685804 + HERVH LTR ERV1 4478 5149 -2564 1359 138 18 5 chr3 204351355 204351572 -13685586 + HERVH LTR ERV1 5600 5819 -1894 * 2264 107 64 13 chr3 204351570 204351943 -13685215 + HERVH LTR ERV1 7322 7713 0 2866 85 94 10 chr3 204351943 204352356 -13684802 + LTR7 LTR ERV1 1 448 -2 1202 85 62 46 chr3 204352469 204352743 -13684415 - MER4-int LTR ERV1 -4281 1268 503 1960 144 80 36 chr3 204352788 204353177 -13683981 + LTR8A LTR ERV1 1 406 -321 3880 142 10 2 chr3 204353177 204353782 -13683376 - MER41B LTR ERV1 0 635 26 1566 289 74 26 chr3 204353882 204354505 -13682653 + MLT2F LTR ERVL 11 663 0 912 261 17 21 chr3 204354509 204354747 -13682411 - MIR SINE MIR -13 249 13 206 292 39 85 chr3 204354703 204354833 -13682325 + MIR3 SINE MIR 84 207 -1 * 485 235 183 7 chr3 204354858 204355011 -13682147 + MER5A DNA MER1_type 9 188 -1 492 122 0 0 chr3 204355038 204355120 -13682038 + (TG)n Simple_repeat Simple_repeat 2 83 0 270 153 0 51 chr3 204356094 204356153 -13681005 - MIR SINE MIR -108 154 99 377 281 25 25 chr3 204356842 204356963 -13680195 + L2 LINE L2 3193 3313 0 273 119 0 0 chr3 204356965 204357007 -13680151 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 374 231 0 0 chr3 204357857 204357922 -13679236 + LTR8A LTR ERV1 663 727 0 252 345 0 17 chr3 204358647 204358763 -13678395 - 7SK RNA RNA -74 119 6 895 265 34 13 chr3 204359252 204359486 -13677672 + MIR SINE MIR 14 252 -10 204 255 0 0 chr3 204360858 204360905 -13676253 + T-rich Low_complexity Low_complexity 1 47 0 189 74 0 0 chr3 204361004 204361031 -13676127 + (TC)n Simple_repeat Simple_repeat 2 28 0 370 235 16 89 chr3 204361496 204361670 -13675488 + MIR SINE MIR 30 192 -66 2037 131 0 27 chr3 204361886 204362184 -13674974 + AluSx SINE Alu 2 291 -21 359 298 33 16 chr3 204362957 204363078 -13674080 + MIR SINE MIR 8 130 -132 306 271 107 33 chr3 204363728 204363850 -13673308 - L2 LINE L2 -2 3270 3140 21 36 0 0 chr3 204364078 204364106 -13673052 + AT_rich Low_complexity Low_complexity 1 28 0 198 270 11 45 chr3 204364385 204364474 -13672684 - L2 LINE L2 -191 3081 2996 865 204 29 0 chr3 204364801 204364973 -13672185 - MER5B DNA MER1_type 0 178 2 349 313 84 34 chr3 204365170 204365349 -13671809 + MER5A DNA MER1_type 1 188 -1 512 272 95 0 chr3 204365403 204365572 -13671586 - MIR SINE MIR 0 262 78 203 0 0 36 chr3 204366529 204366557 -13670601 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 220 196 22 22 chr3 204366569 204366615 -13670543 + L2 LINE L2 3204 3249 -23 183 42 0 0 chr3 204366672 204366696 -13670462 + (CA)n Simple_repeat Simple_repeat 1 24 0 250 301 216 13 chr3 204367112 204367265 -13669893 - MIR3 SINE MIR -15 193 10 188 175 50 0 chr3 204367753 204367793 -13669365 + MIR SINE MIR 120 161 -101 386 221 181 8 chr3 204368205 204368332 -13668826 - MIR SINE MIR -24 238 90 1751 199 114 39 chr3 204368695 204369158 -13668000 - MLT1D LTR MaLR -7 498 1 639 306 53 53 chr3 204369307 204369794 -13667364 + L1MEd LINE L1 535 1021 -5098 327 333 52 37 chr3 204369833 204369941 -13667217 + HAL1 LINE L1 1281 1386 -1121 2492 132 5 48 chr3 204369941 204370335 -13666823 + MER51B LTR ERV1 1 377 0 327 333 52 37 chr3 204370335 204370496 -13666662 + HAL1 LINE L1 1386 1554 -953 405 339 57 6 chr3 204371110 204371287 -13665871 + MIR3 SINE MIR 16 201 -7 296 344 96 48 chr3 204372186 204372416 -13664742 + MIR SINE MIR 22 262 0 1028 243 34 54 chr3 204372525 204372879 -13664279 - LTR37A LTR ERV1 -3 423 77 682 213 8 8 chr3 204372879 204373006 -13664152 + FLAM_A SINE Alu 1 127 -15 354 300 14 57 chr3 204373162 204373302 -13663856 + MIR3 SINE MIR 31 164 -44 664 241 13 9 chr3 204373549 204373733 -13663425 + MLT2D LTR ERVL 63 245 -169 268 285 10 119 chr3 204374087 204374280 -13662878 - MIR SINE MIR -12 250 79 234 272 183 21 chr3 204374786 204374936 -13662222 + MIR SINE MIR 19 193 -69 1407 208 22 16 chr3 204374973 204375105 -13662053 - MER58B DNA MER1_type -2083 337 207 2552 197 11 13 chr3 204375105 204375578 -13661580 + MER70A LTR ERVL 1 472 0 1407 208 22 16 chr3 204375578 204375762 -13661396 - MER58B DNA MER1_type -2213 207 19 343 257 9 55 chr3 204376376 204376485 -13660673 - MIR SINE MIR -51 211 108 1703 99 0 5 chr3 204377778 204378000 -13659158 - AluSq SINE Alu -12 301 81 1209 89 0 0 chr3 204378746 204378892 -13658266 - AluSg/x SINE Alu -89 223 78 216 164 0 73 chr3 204379332 204379387 -13657771 + L2 LINE L2 3213 3263 -9 238 203 58 14 chr3 204379528 204379597 -13657561 + MIR SINE MIR 67 138 -70 550 271 61 42 chr3 204379614 204379876 -13657282 + MLT2F LTR ERVL 1 267 -396 350 337 108 0 chr3 204380002 204380168 -13656990 + MIR SINE MIR 8 191 -71 205 255 21 0 chr3 204380208 204380255 -13656903 + L2 LINE L2 3259 3306 -7 1411 226 83 6 chr3 204380334 204380697 -13656461 + MSTD LTR MaLR 6 396 0 396 277 24 78 chr3 204380968 204381016 -13656142 + L3 LINE CR1 1203 1252 -325 1463 181 3 92 chr3 204381016 204381342 -13655816 - AluJo SINE Alu -13 299 3 396 277 24 78 chr3 204381342 204381459 -13655699 + L3 LINE CR1 1252 1359 -218 329 159 0 14 chr3 204381741 204381810 -13655348 + (CA)n Simple_repeat Simple_repeat 1 68 0 766 274 78 48 chr3 204382526 204382961 -13654197 + MLT1H LTR MaLR 86 533 -16 372 260 188 11 chr3 204383148 204383329 -13653829 + L3 LINE CR1 1345 1557 -20 189 226 12 107 chr3 204384314 204384398 -13652760 + MIR SINE MIR 107 182 -80 519 148 0 0 chr3 204384541 204384629 -13652529 + (TG)n Simple_repeat Simple_repeat 1 88 0 2500 241 57 22 chr3 204384677 204385590 -13651568 - L1M4 LINE L1 -1050 5096 4152 513 171 0 0 chr3 204385607 204385695 -13651463 - AluJo SINE Alu -1 311 224 1055 169 0 28 chr3 204385695 204385873 -13651285 - AluJo SINE Alu -139 173 1 201 210 25 0 chr3 204385906 204385993 -13651165 + CT-rich Low_complexity Low_complexity 1 89 0 1141 174 106 78 chr3 204386046 204386367 -13650791 + MSTD LTR MaLR 9 338 -58 400 325 77 12 chr3 204386399 204386814 -13650344 - L1M4 LINE L1 -2336 3810 3369 1285 216 48 28 chr3 204386863 204387364 -13649794 - L1M4 LINE L1 -2854 3292 2782 242 277 11 21 chr3 204388029 204388123 -13649035 + L1PA15-16 LINE L1 1472 1564 -5285 * 2845 220 28 36 chr3 204388119 204388696 -13648462 + L1PA16 LINE L1 1347 1927 -4922 762 168 7 36 chr3 204388696 204388833 -13648325 + FLAM_C SINE Alu 1 133 0 2845 220 28 36 chr3 204388833 204389519 -13647639 + L1PA16 LINE L1 1927 2652 -4197 * 3249 120 11 0 chr3 204389509 204390041 -13647117 + L1PA10 LINE L1 4461 4998 -1148 * 29328 22 0 0 chr3 204390039 204394448 -13642710 + L1PA2 LINE L1 1746 6154 -1 5923 107 13 10 chr3 204394470 204395645 -13641513 + L1PA10 LINE L1 4984 6165 -3 11625 186 17 25 chr3 204395648 204397576 -13639582 + L1PA16 LINE L1 3198 5139 -1730 330 26 0 0 chr3 204397576 204397615 -13639543 + (CA)n Simple_repeat Simple_repeat 2 40 0 11625 186 17 25 chr3 204397615 204398106 -13639052 + L1PA16 LINE L1 5139 5632 -1237 2140 153 63 27 chr3 204398106 204398463 -13638695 - MSTB LTR MaLR 0 426 51 1979 146 13 10 chr3 204398463 204398765 -13638393 - AluSx SINE Alu -9 303 1 2140 153 63 27 chr3 204398765 204398818 -13638340 - MSTB LTR MaLR -375 51 1 11625 186 17 25 chr3 204398818 204399606 -13637552 + L1PA16 LINE L1 5632 6364 -505 607 164 0 10 chr3 204399606 204399710 -13637448 + U13 snRNA snRNA 1 103 -1 11625 186 17 25 chr3 204399710 204400189 -13636969 + L1PA16 LINE L1 6364 6845 -24 225 138 64 0 chr3 204400206 204400300 -13636858 + (TA)n Simple_repeat Simple_repeat 1 100 0 1090 246 26 14 chr3 204400324 204400669 -13636489 - L1M4 LINE L1 -3381 2765 2417 7612 21 0 0 chr3 204400673 204402141 -13635017 - L1PA2 LINE L1 0 6155 4713 21 0 0 0 chr3 204402627 204402648 -13634510 + AT_rich Low_complexity Low_complexity 1 21 0 239 286 0 0 chr3 204402982 204403045 -13634113 + MIR SINE MIR 81 143 -65 309 341 14 22 chr3 204403745 204403883 -13633275 - L3 LINE CR1 -1 1576 1440 1339 231 123 48 chr3 204404039 204404689 -13632469 - MER50 LTR ERV1 -22 712 14 670 229 83 16 chr3 204405154 204405407 -13631751 + LTR37B LTR ERV1 198 467 -1 228 297 66 11 chr3 204405408 204405499 -13631659 + MIR3 SINE MIR 95 190 -18 648 184 33 140 chr3 204407106 204407378 -13629780 - MER97b DNA MER1_type? -802 251 9 288 0 0 0 chr3 204407491 204407523 -13629635 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 1144 169 6 0 chr3 204407534 204407711 -13629447 - AluSg/x SINE Alu -49 263 86 1749 148 7 17 chr3 204407869 204408159 -13628999 - AluSx SINE Alu -25 287 1 21 57 0 0 chr3 204408206 204408241 -13628917 + AT_rich Low_complexity Low_complexity 1 35 0 2541 201 14 51 chr3 204408299 204408870 -13628288 + MLT2B3 LTR ERVL 5 554 0 225 65 0 0 chr3 204409054 204409085 -13628073 + (TG)n Simple_repeat Simple_repeat 2 32 0 310 226 63 126 chr3 204409263 204409452 -13627706 - MIR3 SINE MIR -69 193 15 1647 124 72 23 chr3 204409465 204409811 -13627347 - L1MA8 LINE L1 -2 6289 5927 1248 103 31 0 chr3 204409813 204410007 -13627151 + MSTB1 LTR MaLR 1 200 -232 2236 106 13 0 chr3 204410008 204410310 -13626848 + AluSx SINE Alu 1 306 -6 594 226 9 0 chr3 204410357 204410472 -13626686 + FLAM_A SINE Alu 1 116 -17 1403 256 65 59 chr3 204410586 204411267 -13625891 - HAL1 LINE L1 0 2507 1823 430 245 0 0 chr3 204411266 204411368 -13625790 + HAL1 LINE L1 804 905 -1602 * 814 237 52 21 chr3 204411548 204411835 -13625323 - HAL1 LINE L1 -1046 1461 1166 3722 335 66 28 chr3 204411836 204411869 -13625289 + HERV16 LTR ERVL 1609 1639 -4125 1878 67 0 0 chr3 204411869 204412093 -13625065 - AluY SINE Alu -6 305 82 3722 335 66 28 chr3 204412093 204412172 -13624986 + HERV16 LTR ERVL 1639 1714 -4050 321 26 0 0 chr3 204412172 204412210 -13624948 + (CA)n Simple_repeat Simple_repeat 1 38 0 3722 335 66 28 chr3 204412210 204414800 -13622358 + HERV16 LTR ERVL 1714 4490 -1274 1734 149 11 54 chr3 204414817 204415167 -13621991 + MLT1C LTR MaLR 1 335 -132 343 316 13 38 chr3 204415182 204415357 -13621801 + HERV16 LTR ERVL 4462 4674 -869 9456 211 10 24 chr3 204415493 204416444 -13620714 + L1PB1 LINE L1 2378 3341 -2810 307 47 0 0 chr3 204416444 204416487 -13620671 - MADE1 DNA Mariner -37 43 1 9456 211 10 24 chr3 204416487 204419317 -13617841 + L1PB1 LINE L1 3341 6142 -9 544 278 28 28 chr3 204420874 204421090 -13616068 + MER69 DNA AcHobo 109 324 -902 2043 95 4 0 chr3 204421152 204421425 -13615733 - AluSp SINE Alu -1 312 39 672 102 51 0 chr3 204421425 204421523 -13615635 - AluSp SINE Alu -210 103 1 483 213 93 7 chr3 204421525 204421675 -13615483 + MER69 DNA AcHobo 1458 1620 -906 688 79 26 18 chr3 204421689 204421803 -13615355 - MER4C LTR ERV1 -2 463 349 2049 188 85 32 chr3 204421945 204422472 -13614686 - LTR60 LTR ERV1 -31 555 1 2152 101 17 34 chr3 204422472 204422830 -13614328 - MER4C LTR ERV1 -113 352 1 2083 206 113 52 chr3 204422900 204423416 -13613742 + MER69 DNA AcHobo 1615 2098 -428 1953 144 77 68 chr3 204423416 204423860 -13613298 - MER83 LTR ERV1 0 448 1 2083 206 113 52 chr3 204423860 204423922 -13613236 + MER69 DNA AcHobo 2098 2155 -371 2034 134 0 44 chr3 204423922 204424242 -13612916 - AluSx SINE Alu -6 306 1 2083 206 113 52 chr3 204424242 204424510 -13612648 + MER69 DNA AcHobo 2155 2514 -12 1091 240 14 0 chr3 204424783 204425004 -13612154 + MER58A DNA MER1_type 1 224 0 488 225 143 68 chr3 204425024 204425304 -13611854 + MLT1G1 LTR MaLR 1 301 -294 409 214 61 11 chr3 204425402 204425550 -13611608 + MLT1H1 LTR MaLR 429 553 -2 403 360 29 29 chr3 204425554 204425726 -13611432 - MIR SINE MIR -70 192 21 1357 219 106 12 chr3 204426003 204426409 -13610749 - L1MB8 LINE L1 -6 6172 5729 391 333 33 0 chr3 204427050 204427170 -13609988 + L2 LINE L2 3134 3257 -15 401 354 55 17 chr3 204427198 204427379 -13609779 - MIR SINE MIR -52 210 23 331 291 12 0 chr3 204428806 204428892 -13608266 - MIR SINE MIR -6 256 170 276 213 12 12 chr3 204429065 204429145 -13608013 - MER116 DNA Mariner 0 80 1 236 295 0 16 chr3 204429299 204429360 -13607798 - L2 LINE L2 -212 3060 3001 318 308 6 26 chr3 204429421 204429577 -13607581 + L1ME2 LINE L1 56 208 -6188 1690 286 61 4 chr3 204429586 204430403 -13606755 + L1ME2 LINE L1 2819 3682 -2533 997 237 0 18 chr3 204430497 204430776 -13606382 + L1ME2 LINE L1 5695 5968 -265 1011 165 0 8 chr3 204430789 204431036 -13606122 + (TA)n Simple_repeat Simple_repeat 1 246 0 231 176 0 0 chr3 204431047 204431098 -13606060 - L1MC4 LINE L1 -1339 6703 6653 25 0 0 0 chr3 204431446 204431471 -13605687 + AT_rich Low_complexity Low_complexity 1 25 0 1369 200 23 19 chr3 204431483 204431793 -13605365 + AluJo SINE Alu 1 311 -1 449 259 157 12 chr3 204432507 204432673 -13604485 + MER20B DNA MER1_type 1 190 -593 327 233 44 11 chr3 204432743 204432833 -13604325 + LTR16C LTR ERVL 394 486 -5 740 237 30 26 chr3 204433028 204433332 -13603826 + MER20B DNA MER1_type 438 742 -41 189 0 0 0 chr3 204433372 204433393 -13603765 + (T)n Simple_repeat Simple_repeat 1 21 0 192 340 93 21 chr3 204433565 204433662 -13603496 - L3 LINE CR1 -353 1224 1121 1194 295 79 9 chr3 204433802 204434256 -13602902 + LTR16C LTR ERVL 1 486 -5 413 255 87 20 chr3 204434292 204434441 -13602717 + MIR3 SINE MIR 2 160 -48 223 302 0 0 chr3 204434572 204434625 -13602533 + L2 LINE L2 3210 3262 -10 494 285 90 25 chr3 204436108 204436440 -13600718 - MLT1G3 LTR MaLR -247 297 1 288 308 140 23 chr3 204436873 204437087 -13600071 - MIR SINE MIR -18 244 6 241 331 65 90 chr3 204437326 204437571 -13599587 + L2 LINE L2 3022 3260 -12 1939 276 63 86 chr3 204437574 204439335 -13597823 + L1MEc LINE L1 37 1837 -4378 2151 125 20 0 chr3 204439335 204439638 -13597520 + AluSx SINE Alu 1 309 -3 1939 276 63 86 chr3 204439638 204440161 -13596997 + L1MEc LINE L1 1837 2220 -3995 600 244 0 0 chr3 204440161 204440292 -13596866 + FLAM_C SINE Alu 2 132 -1 1939 276 63 86 chr3 204440292 204440545 -13596613 + L1MEc LINE L1 2220 2477 -3738 9500 50 90 39 chr3 204440561 204442014 -13595144 + L1P LINE L1 2 1528 -4618 244 311 56 56 chr3 204442947 204443108 -13594050 - MIR3 SINE MIR -35 173 13 352 230 155 50 chr3 204443674 204443835 -13593323 + L1MEc LINE L1 2398 2575 -3640 884 275 56 28 chr3 204443966 204444120 -13593038 + L1MEc LINE L1 2684 2832 -3383 2124 121 0 7 chr3 204444120 204444426 -13592732 + AluSc SINE Alu 1 304 -5 884 275 56 28 chr3 204444426 204444809 -13592349 + L1MEc LINE L1 2832 3236 -2979 263 288 162 40 chr3 204445630 204445852 -13591306 - MLT1K LTR MaLR -21 567 319 21 0 0 0 chr3 204445917 204445938 -13591220 + AT_rich Low_complexity Low_complexity 1 21 0 189 336 66 16 chr3 204446641 204446763 -13590395 + MIR3 SINE MIR 75 202 -6 26 30 0 0 chr3 204446920 204446953 -13590205 + AT_rich Low_complexity Low_complexity 1 33 0 342 273 64 36 chr3 204446957 204447067 -13590091 + MIR SINE MIR 35 147 -61 2297 113 0 0 chr3 204447106 204447407 -13589751 - AluSq SINE Alu -12 301 1 15073 88 23 21 chr3 204447653 204449993 -13587165 - HERVH LTR ERV1 -5370 2343 1 2533 88 108 7 chr3 204449995 204450402 -13586756 - LTR7 LTR ERV1 -2 448 1 5302 91 45 26 chr3 204450402 204451321 -13585837 + MER4A-int LTR ERV1 1560 2495 -4103 1308 173 58 0 chr3 204451321 204451564 -13585594 - LTR8 LTR ERV1 -434 257 1 3394 116 48 40 chr3 204451564 204451954 -13585204 + MER4A-int LTR ERV1 2737 3123 -3475 2161 108 7 3 chr3 204451954 204452249 -13584909 + AluSc SINE Alu 1 296 -13 3394 116 48 40 chr3 204452249 204452704 -13584454 + MER4A-int LTR ERV1 3123 3681 -2917 * 15563 93 61 20 chr3 204452703 204455357 -13581801 + MER4A-int LTR ERV1 3837 6598 0 491 116 53 21 chr3 204455358 204455453 -13581705 + MER4A LTR ERV1 1 98 -566 1604 144 9 31 chr3 204455453 204455806 -13581352 + MER4A LTR ERV1 261 664 0 206 261 34 68 chr3 204455806 204455832 -13581326 - MIR SINE MIR -173 89 64 3017 184 84 13 chr3 204455832 204456511 -13580647 - LTR8A LTR ERV1 0 727 1 206 261 34 68 chr3 204456511 204456572 -13580586 - MIR SINE MIR -198 64 5 * 293 231 27 116 chr3 204456517 204456664 -13580494 + MIR3 SINE MIR 53 186 -22 379 232 5 20 chr3 204457054 204457161 -13579997 - MIR3 SINE MIR 0 208 103 2109 144 126 5 chr3 204457382 204457764 -13579394 + MSTA LTR MaLR 1 428 0 190 302 101 31 chr3 204459432 204459561 -13577597 - MIR3 SINE MIR -38 170 33 1520 176 11 0 chr3 204460443 204460705 -13576453 - AluJo SINE Alu -12 300 36 1409 277 102 41 chr3 204460726 204461476 -13575682 + L2 LINE L2 2361 3156 -157 2269 99 0 13 chr3 204461476 204461779 -13575379 + AluSx SINE Alu 1 299 -13 1409 277 102 41 chr3 204461779 204461948 -13575210 + L2 LINE L2 3156 3313 0 267 311 14 0 chr3 204461963 204462037 -13575121 - MIR3 SINE MIR -49 159 85 1077 189 28 0 chr3 204462104 204462316 -13574842 + MER20 DNA MER1_type 2 219 0 2186 103 0 0 chr3 204462321 204462624 -13574534 + AluSx SINE Alu 1 303 0 204 305 73 12 chr3 204462931 204463013 -13574145 + L2 LINE L2 2995 3081 -191 460 291 8 17 chr3 204463864 204463981 -13573177 - MIR SINE MIR -63 145 30 411 370 37 16 chr3 204464003 204464192 -13572966 + MIR3 SINE MIR 15 207 -1 460 326 50 6 chr3 204464222 204464403 -13572755 - MIR SINE MIR -3 259 71 371 341 130 17 chr3 204464494 204464793 -13572365 - L3 LINE CR1 -125 1452 1120 341 253 148 4 chr3 204464958 204465195 -13571963 + L1ME1 LINE L1 3086 3356 -2790 2617 96 3 0 chr3 204465200 204465554 -13571604 + THE1A LTR MaLR 1 355 0 4149 69 9 0 chr3 204465554 204466121 -13571037 + THE1A-int LTR MaLR 1 572 -1008 1421 108 9 0 chr3 204466129 204466343 -13570815 + THE1A-int LTR MaLR 1365 1580 0 2649 101 0 0 chr3 204466343 204466698 -13570460 + THE1A LTR MaLR 1 355 0 4568 259 39 28 chr3 204466700 204467907 -13569251 + L1ME1 LINE L1 3359 4594 -1552 2098 129 7 19 chr3 204467907 204468217 -13568941 - AluSx SINE Alu -6 306 1 4568 259 39 28 chr3 204468217 204468830 -13568328 + L1ME1 LINE L1 4594 5199 -947 8363 164 20 11 chr3 204468833 204471987 -13565171 + L1PB2 LINE L1 1 2236 -4627 352 43 0 0 chr3 204471988 204472034 -13565124 + L1PB2 LINE L1 2570 2615 -4248 394 130 0 0 chr3 204472057 204472126 -13565032 + L1PB2 LINE L1 3246 3314 -3548 * 6276 213 7 18 chr3 204472124 204473694 -13563464 + L1PB2 LINE L1 4061 5613 -1249 4698 107 19 5 chr3 204473690 204474435 -13562723 + L1PB2 LINE L1 6113 6867 0 * 2241 242 59 33 chr3 204474428 204475388 -13561770 + L1ME1 LINE L1 5188 6325 -4 * 865 286 24 11 chr3 204476060 204476347 -13560811 + LTR16B LTR ERVL 172 462 -2 305 398 4 35 chr3 204476881 204477107 -13560051 + L2 LINE L2 2828 3046 -226 190 309 143 0 chr3 204477893 204477977 -13559181 - L2 LINE L2 -11 3302 3207 1662 165 69 0 chr3 204478087 204478378 -13558780 - AluJb SINE Alu -1 311 1 186 352 37 46 chr3 204479214 204479322 -13557836 + MIR3 SINE MIR 10 116 -92 1596 191 17 10 chr3 204479440 204479739 -13557419 + AluJo SINE Alu 5 305 -7 1774 136 66 3 chr3 204479749 204480036 -13557122 + AluSx SINE Alu 1 305 -7 1853 178 3 0 chr3 204480182 204480475 -13556683 + AluJb SINE Alu 1 294 -18 191 229 83 0 chr3 204480510 204480558 -13556600 + L2 LINE L2 3216 3267 -5 1468 154 111 27 chr3 204480768 204481100 -13556058 - THE1C LTR MaLR 0 375 16 2503 181 0 4 chr3 204481115 204481585 -13555573 - MER67C LTR ERV1 0 710 243 530 152 0 0 chr3 204481581 204481673 -13555485 - LTR49 LTR ERV1 -168 427 336 * 1252 177 0 0 chr3 204481673 204481891 -13555267 - AluJo SINE Alu 0 302 85 26 0 0 0 chr3 204481906 204481932 -13555226 + AT_rich Low_complexity Low_complexity 1 26 0 1658 161 29 40 chr3 204481938 204482287 -13554871 - LTR49 LTR ERV1 -250 345 1 270 137 59 0 chr3 204482420 204482471 -13554687 - MER81 DNA DNA 0 114 61 804 197 0 0 chr3 204483147 204483279 -13553879 - FLAM_C SINE Alu -1 132 1 1935 100 14 41 chr3 204483889 204484211 -13552947 - AluSp SINE Alu 0 314 1 973 312 98 14 chr3 204484576 204485678 -13551480 + L1MEd LINE L1 446 1654 -4656 315 283 16 43 chr3 204486646 204486833 -13550325 + L1MEd LINE L1 2108 2289 -3840 454 152 38 0 chr3 204487156 204487235 -13549923 - LTR49 LTR ERV1 0 595 514 2152 88 38 131 chr3 204487317 204487792 -13549366 - MER4A LTR ERV1 -233 431 1 * 2490 132 43 69 chr3 204487792 204488323 -13548835 - LTR49 LTR ERV1 -78 517 1 1677 171 79 23 chr3 204488758 204488804 -13548354 - LTR56 LTR ERV1 -5 432 390 1976 99 0 42 chr3 204488804 204489087 -13548071 + AluSg SINE Alu 35 305 -5 1677 171 79 23 chr3 204489087 204489485 -13547673 - LTR56 LTR ERV1 -47 390 1 21 82 0 0 chr3 204489543 204489592 -13547566 + AT_rich Low_complexity Low_complexity 1 49 0 223 340 90 0 chr3 204489641 204489741 -13547417 + L2 LINE L2 3200 3308 -5 391 336 21 21 chr3 204489847 204489990 -13547168 - L2 LINE L2 -5 3267 3125 1482 194 15 32 chr3 204490751 204491091 -13546067 - MLT1A1 LTR MaLR -11 354 21 241 29 114 0 chr3 204491091 204491126 -13546032 - MLT2A1 LTR ERVL 0 444 406 14803 94 12 7 chr3 204491126 204493289 -13543869 + L1P LINE L1 3 2178 -3968 2724 97 19 21 chr3 204493289 204493714 -13543444 - MLT2A1 LTR ERVL -20 424 1 193 275 175 12 chr3 204494196 204494276 -13542882 + L2 LINE L2 3172 3264 -8 1069 281 75 28 chr3 204495838 204496365 -13540793 - L2 LINE L2 -5 3308 2748 374 344 147 27 chr3 204496508 204496842 -13540316 + L2 LINE L2 2898 3271 -1 294 125 0 0 chr3 204496842 204496890 -13540268 + (GGGA)n Simple_repeat Simple_repeat 1 48 0 310 279 14 75 chr3 204497459 204497606 -13539552 + MER5B DNA MER1_type 8 145 -33 1259 180 10 0 chr3 204497606 204497806 -13539352 + AluJb SINE Alu 87 288 -24 356 245 38 0 chr3 204498327 204498433 -13538725 + L1MC4 LINE L1 7931 8040 -2 243 218 0 0 chr3 204498447 204498502 -13538656 + GA-rich Low_complexity Low_complexity 3 57 0 256 291 53 53 chr3 204498540 204498691 -13538467 + MIR3 SINE MIR 14 164 -44 344 269 104 65 chr3 204498693 204498953 -13538205 - MLT1F LTR MaLR 0 595 274 2454 63 7 0 chr3 204499392 204499691 -13537467 + AluY SINE Alu 1 301 -10 339 273 107 53 chr3 204499822 204499972 -13537186 - HAL1 LINE L1 -2 2505 2348 420 254 59 43 chr3 204500246 204500502 -13536656 - HAL1 LINE L1 -364 2143 1884 2990 117 21 2 chr3 204500581 204501060 -13536098 - LTR15 LTR ERV1 -5 488 1 2486 272 108 53 chr3 204501062 204502771 -13534387 - HAL1 LINE L1 -698 1809 6 684 327 13 9 chr3 204502972 204503198 -13533960 - MIR SINE MIR -6 256 30 2279 96 0 22 chr3 204503513 204503825 -13533333 - AluSc SINE Alu -4 305 1 422 289 89 24 chr3 204504057 204504517 -13532641 - L1MEc LINE L1 -2929 3286 2797 1701 190 23 23 chr3 204504623 204504933 -13532225 - AluJb SINE Alu -2 310 1 942 218 11 0 chr3 204504995 204505183 -13531975 + MER58A DNA MER1_type 1 190 -34 298 148 98 16 chr3 204505207 204505268 -13531890 + MER58A DNA MER1_type 159 224 0 507 223 51 5 chr3 204505373 204505597 -13531561 + MER3 DNA MER1_type 2 194 -15 180 200 0 25 chr3 204506333 204506373 -13530785 - MIR3 SINE MIR -48 160 122 807 113 0 15 chr3 204506719 204506852 -13530306 + L1PB1 LINE L1 6020 6150 -1 2127 95 0 11 chr3 204507254 204507566 -13529592 - AluSx SINE Alu 0 309 1 257 233 33 0 chr3 204508535 204508595 -13528563 - MIR SINE MIR -93 169 108 231 268 102 45 chr3 204508867 204509024 -13528134 - MIR3 SINE MIR -40 168 3 343 310 58 47 chr3 204509624 204509835 -13527323 + MIR SINE MIR 32 245 -17 221 282 0 42 chr3 204509854 204509925 -13527233 - L2 LINE L2 -19 3253 3186 399 313 205 29 chr3 204509947 204510254 -13526904 - L2 LINE L2 -2 3270 2910 1625 274 73 25 chr3 204511260 204511407 -13525751 - L1MEc LINE L1 -4838 1558 1420 216 97 0 0 chr3 204511407 204511438 -13525720 + (TG)n Simple_repeat Simple_repeat 2 32 0 1625 274 73 25 chr3 204511438 204512230 -13524928 - L1MEc LINE L1 -4976 1420 573 238 302 69 43 chr3 204513369 204513485 -13523673 - MIR SINE MIR -55 153 35 2492 53 3 3 chr3 204514332 204514633 -13522525 + AluY SINE Alu 1 301 -10 6602 138 23 19 chr3 204515156 204515194 -13521964 - Tigger3b DNA MER2_type -1813 1215 1179 2039 114 6 69 chr3 204515194 204515554 -13521604 - MER1B DNA MER1_type 0 337 1 6602 138 23 19 chr3 204515554 204516721 -13520437 - Tigger3b DNA MER2_type -1849 1179 5 22 35 0 0 chr3 204517070 204517099 -13520059 + AT_rich Low_complexity Low_complexity 1 29 0 285 128 0 0 chr3 204517275 204517322 -13519836 + MER66A LTR ERV1 290 336 -142 1925 208 77 88 chr3 204517690 204518639 -13518519 + L1MC5 LINE L1 6756 7694 -267 515 233 57 41 chr3 204518651 204519441 -13517717 + L1MC3 LINE L1 6763 7523 -328 2673 63 0 22 chr3 204519441 204519804 -13517354 + L1PA6 LINE L1 5792 6146 -8 515 233 57 41 chr3 204519804 204519957 -13517201 + L1MC3 LINE L1 7523 7672 -179 1404 61 0 6 chr3 204520196 204520377 -13516781 - L1PA5 LINE L1 -2 6152 5973 680 84 0 0 chr3 204520377 204520472 -13516686 + L1PA5 LINE L1 5870 5964 -190 22 0 0 0 chr3 204520472 204520494 -13516664 + AT_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chr3 204520556 204520582 -13516576 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 408 239 8 39 chr3 204520613 204520743 -13516415 + L1ME1 LINE L1 6036 6161 -5 22 0 0 0 chr3 204520953 204520975 -13516183 + AT_rich Low_complexity Low_complexity 1 22 0 327 290 10 10 chr3 204521232 204521332 -13515826 + L1ME LINE L1 5726 5825 -296 1222 111 0 169 chr3 204521420 204521745 -13515413 + L1MA4 LINE L1 6020 6289 -11 465 211 0 0 chr3 204522035 204522137 -13515021 + AluJb SINE Alu 208 309 0 389 242 0 33 chr3 204522149 204522269 -13514889 + L1MC5 LINE L1 7786 7901 -60 2166 98 33 20 chr3 204522411 204522717 -13514441 - AluY SINE Alu -1 310 1 2157 65 0 4 chr3 204523184 204523444 -13513714 + AluY SINE Alu 40 298 -13 1510 171 13 45 chr3 204523923 204524232 -13512926 - AluJo SINE Alu -13 299 1 360 335 6 22 chr3 204524864 204525046 -13512112 + CT-rich Low_complexity Low_complexity 2 180 0 683 278 11 16 chr3 204525815 204526006 -13511152 + MIR SINE MIR 29 218 -44 2338 81 7 3 chr3 204526008 204526304 -13510854 + AluSg SINE Alu 1 297 -13 716 284 48 36 chr3 204526608 204526858 -13510300 + MIR SINE MIR 5 257 -5 317 366 40 56 chr3 204528500 204528803 -13508355 + L2 LINE L2 2887 3184 -88 290 211 193 26 chr3 204528836 204528950 -13508208 + MLT1J2 LTR MaLR 35 167 -283 265 273 105 14 chr3 204529030 204529173 -13507985 + MLT1J2 LTR MaLR 282 437 -13 829 167 0 0 chr3 204529989 204530127 -13507031 - MER41D LTR ERV1 -416 141 4 821 198 25 87 chr3 204530130 204530372 -13506786 + MLT1-int LTR MaLR 1094 1320 -51 22 0 0 0 chr3 204531942 204531964 -13505194 + AT_rich Low_complexity Low_complexity 1 22 0 898 158 0 0 chr3 204532784 204532917 -13504241 + AluJb SINE Alu 1 133 -179 239 77 0 26 chr3 204533464 204533503 -13503655 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2041 250 77 61 chr3 204533989 204535600 -13501558 + L1MDb LINE L1 782 2394 -4012 1994 219 75 7 chr3 204535640 204536228 -13500930 + L1MDb LINE L1 2373 3000 -3406 313 283 76 0 chr3 204536242 204536334 -13500824 + L2 LINE L2 3215 3313 0 22 80 0 0 chr3 204536340 204536390 -13500768 + AT_rich Low_complexity Low_complexity 1 50 0 22 56 0 0 chr3 204536518 204536554 -13500604 + AT_rich Low_complexity Low_complexity 1 36 0 556 314 77 16 chr3 204536570 204537009 -13500149 - L1ME4a LINE L1 -140 5981 5516 517 186 16 0 chr3 204537864 204537988 -13499170 + CT-rich Low_complexity Low_complexity 2 127 0 363 345 33 36 chr3 204538980 204539220 -13497938 + L2 LINE L2 2816 3050 -222 986 241 51 10 chr3 204539704 204540032 -13497126 - MER49 LTR ERV1 0 841 455 832 213 64 164 chr3 204540612 204541034 -13496124 - MLT1F1 LTR MaLR 0 567 188 1939 152 52 63 chr3 204541037 204541464 -13495694 - MSTB1 LTR MaLR -10 422 1 546 269 42 6 chr3 204541492 204541659 -13495499 - MLT1F1 LTR MaLR -367 175 3 282 217 0 0 chr3 204541887 204541956 -13495202 + (CA)n Simple_repeat Simple_repeat 2 70 0 275 238 38 38 chr3 204542116 204542196 -13494962 - MIR SINE MIR -69 139 60 2091 121 0 7 chr3 204542344 204542641 -13494517 + AluSq SINE Alu 1 295 -18 236 310 110 0 chr3 204543300 204543400 -13493758 + L3b LINE CR1 1210 1320 -263 607 266 173 31 chr3 204543658 204543884 -13493274 + MIR SINE MIR 2 259 -3 460 274 7 15 chr3 204544212 204544347 -13492811 - MIR3 SINE MIR -63 145 12 197 317 0 0 chr3 204544732 204544792 -13492366 + L2 LINE L2 3194 3253 -19 28 29 0 0 chr3 204545782 204545817 -13491341 + AT_rich Low_complexity Low_complexity 1 35 0 1672 198 6 9 chr3 204545828 204546166 -13490992 - MLT2C1 LTR ERVL -55 342 6 193 305 55 70 chr3 204546175 204546303 -13490855 - MIR SINE MIR -66 196 71 207 349 124 8 chr3 204546389 204546518 -13490640 - L2 LINE L2 -2 3270 3127 205 161 0 0 chr3 204546520 204546551 -13490607 + (CA)n Simple_repeat Simple_repeat 2 32 0 3415 147 32 14 chr3 204547057 204547648 -13489510 + Tigger1 DNA MER2_type 1 602 -1816 1913 98 0 18 chr3 204547648 204547922 -13489236 + AluY SINE Alu 1 269 -42 369 160 13 13 chr3 204547952 204548027 -13489131 - MLT1C LTR MaLR -392 75 1 285 327 157 13 chr3 204549648 204549807 -13487351 - L2 LINE L2 -5 3267 3086 663 209 82 41 chr3 204549947 204550143 -13487015 + MER3 DNA MER1_type 6 209 0 403 322 26 13 chr3 204550511 204550663 -13486495 + MIR3 SINE MIR 3 156 -52 408 188 18 125 chr3 204551178 204551217 -13485941 - L2 LINE L2 0 3313 3271 492 232 28 45 chr3 204551217 204551394 -13485764 - MER5B DNA MER1_type 0 178 5 408 188 18 125 chr3 204551394 204551466 -13485692 - L2 LINE L2 -42 3271 3214 242 242 91 85 chr3 204551503 204551668 -13485490 - MIR SINE MIR -90 172 7 480 292 68 64 chr3 204551895 204552030 -13485128 - L2 LINE L2 -19 3253 3115 1411 250 6 17 chr3 204552030 204552374 -13484784 - MER58B DNA MER1_type -1 340 1 480 292 68 64 chr3 204552374 204552474 -13484684 - L2 LINE L2 -157 3115 3017 538 326 56 0 chr3 204552722 204552937 -13484221 - MIR SINE MIR -6 256 30 2270 82 0 67 chr3 204553376 204553706 -13483452 - AluSg SINE Alu -2 308 1 22 0 0 0 chr3 204554775 204554797 -13482361 + AT_rich Low_complexity Low_complexity 1 22 0 227 259 12 0 chr3 204555534 204555619 -13481539 - L1ME LINE L1 -274 5847 5762 3294 126 5 36 chr3 204555742 204556297 -13480861 + L1PA14 LINE L1 5624 6161 0 264 200 0 0 chr3 204556390 204556445 -13480713 + (CATA)n Simple_repeat Simple_repeat 2 56 0 327 203 0 0 chr3 204556512 204556581 -13480577 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 228 214 71 0 chr3 204556866 204556922 -13480236 + (CATATA)n Simple_repeat Simple_repeat 5 64 0 570 300 47 15 chr3 204557287 204557627 -13479531 + L1MC4a LINE L1 7064 7414 -394 286 287 16 61 chr3 204557613 204557860 -13479298 + L1MC5 LINE L1 7312 7547 -414 * 293 300 58 5 chr3 204558026 204558216 -13478942 + L1MC4 LINE L1 7816 8015 -27 574 302 69 27 chr3 204558379 204559005 -13478153 - L1M4 LINE L1 -3042 3104 2453 1580 173 15 23 chr3 204559017 204559359 -13477799 + L1MC3 LINE L1 7447 7785 0 2251 121 0 9 chr3 204559375 204559690 -13477468 + AluSx SINE Alu 1 312 0 354 248 14 76 chr3 204559750 204559960 -13477198 + L1MEd LINE L1 641 837 -5282 13207 188 16 8 chr3 204560068 204561872 -13475286 - L1PA13 LINE L1 -1 6162 4374 2404 105 22 19 chr3 204561872 204562235 -13474923 - THE1B LTR MaLR 0 364 1 13207 188 16 8 chr3 204562235 204564065 -13473093 - L1PA13 LINE L1 -1789 4374 2500 786 328 58 27 chr3 204565228 204566006 -13471152 + L2 LINE L2 2475 3275 -38 4271 75 0 2 chr3 204566009 204566569 -13470589 - L1PA8 LINE L1 -8 6164 5606 3467 111 9 0 chr3 204566663 204567222 -13469936 - L1PA8 LINE L1 -743 5403 4840 1944 139 60 35 chr3 204567337 204567703 -13469455 - THE1C LTR MaLR 0 375 1 2210 83 0 0 chr3 204567719 204567995 -13469163 + AluY SINE Alu 36 311 0 748 293 29 38 chr3 204568250 204568591 -13468567 + MLT1J1 LTR MaLR 84 421 -25 1950 115 0 4 chr3 204568691 204568951 -13468207 + AluSq SINE Alu 37 295 -18 437 237 115 6 chr3 204568956 204569112 -13468046 - HAL1 LINE L1 -1096 1411 1239 370 200 135 74 chr3 204569123 204569448 -13467710 - HAL1 LINE L1 -1334 1173 829 676 314 95 78 chr3 204569459 204570134 -13467024 - HAL1 LINE L1 -1713 794 109 623 156 10 0 chr3 204570168 204570264 -13466894 - FLAM_C SINE Alu -18 125 29 304 288 86 74 chr3 204571238 204571495 -13465663 + MIR SINE MIR 2 261 -1 1651 186 58 9 chr3 204571656 204571983 -13465175 - MER61A LTR ERV1 0 343 1 646 331 94 28 chr3 204572050 204572410 -13464748 - L3 LINE CR1 -157 1420 1037 181 367 68 48 chr3 204572701 204572848 -13464310 + MIR SINE MIR 34 183 -79 334 312 89 94 chr3 204573011 204573213 -13463945 + MIR3 SINE MIR 2 202 -6 249 309 21 75 chr3 204573909 204574003 -13463155 - MIR SINE MIR -152 110 22 507 279 100 22 chr3 204574171 204574440 -13462718 + HAL1 LINE L1 1473 1762 -745 374 314 59 55 chr3 204575001 204575221 -13461937 + HAL1 LINE L1 2270 2490 -17 645 58 0 0 chr3 204576065 204576077 -13461081 + (TTCC)n Simple_repeat Simple_repeat 1 98 0 645 58 0 0 chr3 204576077 204576163 -13460995 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 253 328 22 70 chr3 204576249 204576520 -13460638 + L2 LINE L2 2830 3087 -185 198 311 0 0 chr3 204576656 204576701 -13460457 + L2 LINE L2 3218 3262 -10 1424 217 49 40 chr3 204578162 204578567 -13458591 + MLT1C LTR MaLR 7 415 -52 486 268 42 47 chr3 204580090 204580303 -13456855 - MIR SINE MIR -11 251 40 499 281 76 23 chr3 204580672 204580843 -13456315 + MIR3 SINE MIR 5 184 -24 234 319 147 12 chr3 204581307 204581470 -13455688 - MIR SINE MIR -56 206 22 2781 162 26 15 chr3 204581561 204582023 -13455135 + MLT1C LTR MaLR 1 467 0 419 345 201 0 chr3 204582531 204582740 -13454418 - L2 LINE L2 -8 3264 3014 212 231 92 31 chr3 204583046 204583111 -13454047 - MIR SINE MIR -110 152 84 354 269 57 14 chr3 204583114 204583255 -13453903 + MLT1J LTR MaLR 2 148 -363 2124 121 3 22 chr3 204583370 204583685 -13453473 - L1PB1 LINE L1 -18 6133 5825 9784 154 51 17 chr3 204583690 204587275 -13449883 - L1PBa LINE L1 -1914 4948 1093 4079 227 54 5 chr3 204587278 204588270 -13448888 - L1PBa LINE L1 -5817 1046 6 335 275 76 64 chr3 204588319 204588555 -13448603 + MLT1J LTR MaLR 273 511 0 315 314 58 0 chr3 204588739 204588860 -13448298 + MIR3 SINE MIR 48 175 -33 432 255 14 64 chr3 204591492 204591633 -13445525 + MIR SINE MIR 129 262 0 225 159 0 0 chr3 204592296 204592340 -13444818 + A-rich Low_complexity Low_complexity 1 44 0 209 33 33 0 chr3 204592518 204592548 -13444610 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 327 331 41 0 chr3 204593199 204593320 -13443838 - L3 LINE CR1 -87 1490 1365 278 302 23 0 chr3 204593509 204593595 -13443563 - L2 LINE L2 -4 3309 3222 202 224 17 69 chr3 204594009 204594067 -13443091 - L3 LINE CR1 -6 1571 1517 223 247 90 56 chr3 204595630 204595719 -13441439 + MIR SINE MIR 110 201 -61 233 231 19 19 chr3 204595787 204595839 -13441319 + L2 LINE L2 3114 3165 -107 228 67 0 0 chr3 204596175 204596205 -13440953 + (TG)n Simple_repeat Simple_repeat 1 30 0 252 260 220 13 chr3 204596696 204596846 -13440312 + MIR SINE MIR 71 251 -11 339 319 99 87 chr3 204597580 204598234 -13438924 + L2 LINE L2 2552 3242 -30 294 319 42 42 chr3 204598240 204598406 -13438752 + MER5B DNA MER1_type 7 172 -6 206 255 78 0 chr3 204598684 204598735 -13438423 + L2 LINE L2 3210 3264 -8 497 282 82 24 chr3 204598756 204598926 -13438232 + MIR3 SINE MIR 21 200 -8 205 366 122 0 chr3 204599880 204600044 -13437114 + L3 LINE CR1 1393 1576 -1 214 348 28 21 chr3 204600347 204600488 -13436670 + MIR3 SINE MIR 32 173 -35 717 298 175 15 chr3 204601551 204601877 -13435281 + L2 LINE L2 2935 3312 -1 338 294 123 0 chr3 204601896 204602042 -13435116 - MIR SINE MIR -78 184 21 276 291 126 29 chr3 204602855 204602958 -13434200 - MIR SINE MIR -116 146 34 210 179 0 26 chr3 204603188 204603227 -13433931 + MIR SINE MIR 18 55 -207 188 323 43 32 chr3 204603263 204603356 -13433802 + MIR SINE MIR 157 250 -12 1157 153 16 11 chr3 204603680 204603870 -13433288 + MLT1A1 LTR MaLR 10 200 -165 3356 159 71 125 chr3 204603870 204603891 -13433267 + MER21A LTR ERV1 1 22 -909 327 49 0 0 chr3 204603891 204603932 -13433226 + (TG)n Simple_repeat Simple_repeat 2 42 0 3356 159 71 125 chr3 204603932 204604664 -13432494 + MER21A LTR ERV1 22 792 -139 2217 121 0 0 chr3 204604664 204604969 -13432189 + AluSx SINE Alu 6 310 -2 3356 159 71 125 chr3 204604969 204605044 -13432114 + MER21A LTR ERV1 792 775 -156 195 42 0 0 chr3 204605044 204605068 -13432090 + (AATTG)n Simple_repeat Simple_repeat 3 26 0 3356 159 71 125 chr3 204605068 204605194 -13431964 + MER21A LTR ERV1 774 905 -26 968 167 6 6 chr3 204605220 204605382 -13431776 + MLT1A1 LTR MaLR 204 365 0 211 305 0 17 chr3 204605429 204605488 -13431670 - MIR SINE MIR -201 61 4 346 216 60 69 chr3 204605637 204605753 -13431405 - MIR3 SINE MIR -12 196 82 2112 115 16 13 chr3 204606071 204606383 -13430775 + AluSq SINE Alu 1 313 0 581 315 105 49 chr3 204606702 204607112 -13430046 + L2 LINE L2 2835 3267 -46 242 344 56 33 chr3 204607674 204607854 -13429304 - MIR SINE MIR -3 259 76 358 280 64 16 chr3 204608852 204608977 -13428181 - LTR16A1 LTR ERVL -3 454 324 322 234 103 9 chr3 204609091 204609198 -13427960 - LTR16A1 LTR ERVL -338 119 3 236 329 175 46 chr3 204609768 204610048 -13427110 + L2 LINE L2 2956 3271 -1 656 283 63 15 chr3 204610166 204610290 -13426868 - MIR SINE MIR -8 254 115 4259 111 13 79 chr3 204610290 204611001 -13426157 + MER4A LTR ERV1 1 664 0 656 283 63 15 chr3 204611001 204611081 -13426077 - MIR SINE MIR -147 115 40 393 388 8 0 chr3 204611435 204611564 -13425594 + L2 LINE L2 3143 3272 0 282 280 0 13 chr3 204611598 204611673 -13425485 + MER5A DNA MER1_type 7 80 -109 2458 150 89 0 chr3 204611887 204612280 -13424878 - MSTA LTR MaLR 0 428 1 9420 165 28 46 chr3 204612280 204613916 -13423242 - MSTA-int LTR MaLR 0 1651 45 1856 156 7 17 chr3 204613916 204614218 -13422940 - AluJb SINE Alu -13 299 1 9420 165 28 46 chr3 204614218 204614263 -13422895 - MSTA-int LTR MaLR -1606 45 1 2158 162 94 10 chr3 204614263 204614658 -13422500 - MSTA LTR MaLR 0 428 1 285 195 168 18 chr3 204615377 204615490 -13421668 - MIR SINE MIR -13 249 120 1661 206 45 28 chr3 204617177 204617536 -13419622 - MLT1A1 LTR MaLR 0 365 1 193 384 30 23 chr3 204617748 204617881 -13419277 + L2 LINE L2 2714 2847 -467 701 268 65 19 chr3 204617897 204618124 -13419034 - MIR SINE MIR -9 253 20 276 370 21 82 chr3 204618192 204618473 -13418685 + L2 LINE L2 2928 3191 -81 270 255 85 68 chr3 204618529 204618743 -13418415 - MIR3 SINE MIR -33 229 10 347 279 108 9 chr3 204618831 204618942 -13418216 - MIR SINE MIR 0 262 141 1535 228 40 50 chr3 204618944 204619413 -13417745 - MER31B LTR ERV1 0 543 1 203 170 57 38 chr3 204619416 204619469 -13417689 - MIR SINE MIR -117 145 92 240 276 0 81 chr3 204619471 204619558 -13417600 - L1M2b LINE L1 -6209 1000 921 181 250 0 0 chr3 204619647 204619683 -13417475 + MIR SINE MIR 221 256 -6 272 230 70 0 chr3 204620509 204620609 -13416549 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 204 191 18 27 chr3 204620621 204620731 -13416427 + (CAGAGA)n Simple_repeat Simple_repeat 2 110 0 820 273 18 13 chr3 204620801 204621028 -13416130 + MIR SINE MIR 14 241 -21 560 288 26 31 chr3 204621549 204621740 -13415418 + MIR3 SINE MIR 16 205 -3 309 340 68 0 chr3 204622449 204622596 -13414562 - L3 LINE CR1 -1 1576 1420 186 43 0 0 chr3 204623652 204623675 -13413483 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 3152 54 5 0 chr3 204623675 204624044 -13413114 - L1PA7 LINE L1 0 6154 5784 364 177 0 0 chr3 204624410 204624472 -13412686 - L1MA8 LINE L1 -321 5970 5909 246 150 0 0 chr3 204624485 204624525 -13412633 + MIR SINE MIR 153 192 -70 262 264 0 0 chr3 204625069 204625122 -13412036 + polypurine Low_complexity Low_complexity 2 54 0 1122 72 26 0 chr3 204626299 204626451 -13410707 + AluSq SINE Alu 1 156 -157 676 109 0 0 chr3 204626451 204626543 -13410615 + AluSg/x SINE Alu 214 305 -5 345 240 40 30 chr3 204626642 204626742 -13410416 - MLT1D LTR MaLR -2 503 403 1541 196 101 35 chr3 204626764 204627081 -13410077 - MLT1D LTR MaLR -81 424 74 2071 125 54 41 chr3 204627081 204627449 -13409709 - THE1C LTR MaLR 0 375 3 1541 196 101 35 chr3 204627449 204627529 -13409629 - MLT1D LTR MaLR -431 74 1 201 195 0 0 chr3 204629056 204629097 -13408061 + T-rich Low_complexity Low_complexity 1 41 0 262 227 173 0 chr3 204629370 204629445 -13407713 - MIR3 SINE MIR -7 201 114 246 352 143 9 chr3 204629697 204629802 -13407356 + MIR SINE MIR 23 141 -67 524 348 87 27 chr3 204629836 204630680 -13406478 + L2 LINE L2 1986 2879 -435 254 357 58 58 chr3 204631161 204631486 -13405672 + L2 LINE L2 2948 3272 0 242 371 0 10 chr3 204633099 204633196 -13403962 + L3 LINE CR1 1428 1523 -54 420 228 110 0 chr3 204633972 204634099 -13403059 + L1ME2 LINE L1 5727 5867 -297 780 217 13 0 chr3 204634417 204634574 -13402584 - MER5A DNA MER1_type -1 188 30 21 0 0 0 chr3 204634724 204634745 -13402413 + AT_rich Low_complexity Low_complexity 1 21 0 1683 193 0 13 chr3 204634997 204635298 -13401860 - AluJb SINE Alu -15 297 1 267 342 105 0 chr3 204635812 204635926 -13401232 - L2 LINE L2 -1 3271 3146 1394 219 100 61 chr3 204636140 204636602 -13400556 + L1MCb LINE L1 3 482 -5563 788 334 47 58 chr3 204636618 204637175 -13399983 + ERVL LTR ERVL 1160 1710 -4054 779 65 59 0 chr3 204637181 204637351 -13399807 + (TA)n Simple_repeat Simple_repeat 1 180 0 46 0 0 0 chr3 204637351 204637397 -13399761 + AT_rich Low_complexity Low_complexity 1 46 0 5728 296 34 22 chr3 204637397 204637416 -13399742 + ERVL LTR ERVL 1658 1675 -4089 835 73 28 22 chr3 204637416 204637595 -13399563 + (TA)n Simple_repeat Simple_repeat 1 180 0 5728 296 34 22 chr3 204637595 204638766 -13398392 + ERVL LTR ERVL 1675 2960 -2804 3360 136 2 29 chr3 204638766 204638985 -13398173 - L1PA15 LINE L1 -5 6160 5937 2226 104 3 0 chr3 204638985 204639274 -13397884 - AluY SINE Alu -21 290 1 3360 136 2 29 chr3 204639274 204639575 -13397583 - L1PA15 LINE L1 -228 5937 5654 5728 296 34 22 chr3 204639575 204640377 -13396781 + ERVL LTR ERVL 2960 3751 -2013 417 395 14 25 chr3 204640384 204640670 -13396488 + L3 LINE CR1 987 1269 -308 297 260 14 96 chr3 204640676 204640866 -13396292 + MIR SINE MIR 40 212 -50 292 305 132 11 chr3 204641447 204641621 -13395537 - MLT1K LTR MaLR -360 228 34 200 143 29 0 chr3 204642699 204642734 -13394424 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 456 244 72 25 chr3 204642986 204643127 -13394031 + MIR SINE MIR 7 145 -63 190 359 82 35 chr3 204643927 204644097 -13393061 + MIR3 SINE MIR 3 180 -28 271 263 125 13 chr3 204644956 204645108 -13392050 - MIR SINE MIR -2 260 92 241 293 24 12 chr3 204645422 204645504 -13391654 - MIR3 SINE MIR -20 188 106 2081 80 0 14 chr3 204645606 204645881 -13391277 - AluY SINE Alu -2 309 39 459 35 0 0 chr3 204647943 204648000 -13389158 + (CA)n Simple_repeat Simple_repeat 2 58 0 211 239 22 0 chr3 204650954 204651000 -13386158 + CT-rich Low_complexity Low_complexity 3 49 0 301 259 0 0 chr3 204651478 204651559 -13385599 - MIR SINE MIR -114 148 68 557 258 145 0 chr3 204651856 204652015 -13385143 + MIR3 SINE MIR 16 197 -11 184 293 0 0 chr3 204652303 204652344 -13384814 - L2 LINE L2 -56 3257 3217 662 281 119 32 chr3 204652415 204652822 -13384336 - L2 LINE L2 -254 3059 2621 328 329 13 26 chr3 204653044 204653196 -13383962 - L2 LINE L2 -700 2614 2465 189 259 0 37 chr3 204653381 204653435 -13383723 + MIR SINE MIR 16 67 -141 1720 103 33 44 chr3 204654731 204655003 -13382155 + AluSq SINE Alu 39 307 -6 183 343 39 20 chr3 204655011 204655113 -13382045 + L2 LINE L2 3202 3305 -8 509 265 60 13 chr3 204656150 204656301 -13380857 - MER5B DNA MER1_type -2 176 19 251 279 18 42 chr3 204656356 204656521 -13380637 + CT-rich Low_complexity Low_complexity 2 162 0 330 306 9 18 chr3 204656687 204656798 -13380360 - MIR3 SINE MIR -34 174 65 2109 105 40 3 chr3 204656824 204657120 -13380038 - AluSc SINE Alu -2 307 1 202 314 29 0 chr3 204657770 204657840 -13379318 - MIR3 SINE MIR 0 208 137 621 216 102 57 chr3 204658370 204658615 -13378543 + MER112 DNA MER1_type 1 256 0 1297 235 129 46 chr3 204658851 204659307 -13377851 + MLT1D LTR MaLR 5 498 -7 264 324 0 0 chr3 204659685 204659753 -13377405 - MIR SINE MIR -73 135 68 2247 108 0 3 chr3 204660298 204660604 -13376554 + AluSq SINE Alu 1 305 -8 2325 226 32 15 chr3 204661551 204662087 -13375071 + MER90 LTR ERV1 70 614 0 354 332 70 34 chr3 204662720 204663018 -13374140 - HAL1b LINE L1 -648 700 392 246 32 0 0 chr3 204663042 204663073 -13374085 + (CA)n Simple_repeat Simple_repeat 2 32 0 1541 196 101 35 chr3 204663687 204663767 -13373391 + MLT1D LTR MaLR 1 74 -431 2050 128 54 41 chr3 204663767 204664135 -13373023 + THE1C LTR MaLR 3 375 0 1541 196 101 35 chr3 204664135 204664452 -13372706 + MLT1D LTR MaLR 74 424 -81 345 240 40 30 chr3 204664474 204664574 -13372584 + MLT1D LTR MaLR 403 503 -2 2041 126 0 20 chr3 204664771 204664793 -13372365 - AluSx SINE Alu -16 296 275 198 0 0 0 chr3 204664793 204664815 -13372343 + (G)n Simple_repeat Simple_repeat 1 22 0 2041 126 0 20 chr3 204664815 204665094 -13372064 - AluSx SINE Alu -37 275 1 1775 172 12 23 chr3 204665110 204665453 -13371705 - L1MC3 LINE L1 0 7785 7447 791 302 69 27 chr3 204665465 204666091 -13371067 + L1M4 LINE L1 2453 3104 -3042 374 289 75 79 chr3 204666254 204666857 -13370301 - L1MC4 LINE L1 -27 8015 7312 12780 57 12 9 chr3 204666988 204669189 -13367969 - L1P LINE L1 -3604 2542 202 1925 123 0 14 chr3 204669297 204669581 -13367577 + AluSq SINE Alu 14 293 -20 3939 243 65 31 chr3 204669592 204671012 -13366146 + L1M4 LINE L1 3702 5169 -977 2197 114 3 3 chr3 204671862 204672159 -13364999 - AluSc SINE Alu -12 297 1 485 334 130 16 chr3 204673207 204673584 -13363574 + L2 LINE L2 2853 3272 0 440 309 0 9 chr3 204674177 204674287 -13362871 + L2 LINE L2 3155 3263 -9 837 240 8 50 chr3 204674427 204674669 -13362489 + L1ME3A LINE L1 5934 6165 -5 226 204 0 37 chr3 204674801 204674855 -13362303 - Tigger4(Zombi) DNA MER2_type -1212 1519 1468 653 231 45 30 chr3 204674981 204675180 -13361978 - AluSg/x SINE Alu -18 291 90 6124 131 6 8 chr3 204676436 204677494 -13359664 - L1P LINE L1 -1022 5124 4069 189 200 20 40 chr3 204677618 204677668 -13359490 + L2 LINE L2 3171 3219 -94 388 273 0 45 chr3 204678035 204678167 -13358991 + MIR SINE MIR 96 221 -41 537 249 124 10 chr3 204678414 204678615 -13358543 - MIR SINE MIR -32 230 7 207 0 0 0 chr3 204678964 204678987 -13358171 + (T)n Simple_repeat Simple_repeat 1 23 0 2054 124 10 10 chr3 204679003 204679302 -13357856 + AluSx SINE Alu 1 299 -13 188 156 31 0 chr3 204679391 204679423 -13357735 + L2 LINE L2 3224 3256 -16 2551 65 0 0 chr3 204679427 204679734 -13357424 + AluY SINE Alu 1 307 -4 322 129 12 119 chr3 204680440 204680540 -13356618 - MER69 DNA AcHobo -1 2525 2436 512 261 106 0 chr3 204681084 204681245 -13355913 - MLT1J LTR MaLR 0 511 334 859 267 69 86 chr3 204681390 204681891 -13355267 + MLT1G LTR MaLR 30 555 0 901 204 54 27 chr3 204681920 204682106 -13355052 - MLT1J LTR MaLR -320 191 1 4110 163 94 86 chr3 204682241 204683303 -13353855 + MER11C LTR ERVK 1 1071 0 4315 185 40 33 chr3 204683701 204684015 -13353143 + MER21B LTR ERV1 3 313 -550 2054 147 3 0 chr3 204684015 204684314 -13352844 + AluSg SINE Alu 1 300 -10 4315 185 40 33 chr3 204684314 204684828 -13352330 + MER21B LTR ERV1 313 837 -26 246 32 0 0 chr3 204685477 204685508 -13351650 + (TG)n Simple_repeat Simple_repeat 2 32 0 354 332 70 34 chr3 204685532 204685830 -13351328 + HAL1b LINE L1 392 700 -648 2384 220 32 15 chr3 204686463 204686999 -13350159 - MER90 LTR ERV1 0 614 70 1802 154 17 3 chr3 204688014 204688313 -13348845 - AluSc SINE Alu -6 303 1 197 273 82 27 chr3 204688413 204688523 -13348635 + L2 LINE L2 3197 3312 -1 1828 167 0 7 chr3 204688980 204689273 -13347885 - AluJb SINE Alu -16 296 6 2043 134 0 0 chr3 204689522 204689814 -13347344 + AluJb SINE Alu 5 296 -16 234 239 130 29 chr3 204689869 204690007 -13347151 + MIR SINE MIR 72 223 -39 259 345 100 23 chr3 204690162 204690423 -13346735 - L2 LINE L2 -49 3223 2943 790 273 40 32 chr3 204690455 204690704 -13346454 + MIR SINE MIR 2 252 -10 591 179 9 0 chr3 204691500 204691749 -13345409 + HSAT4 Satellite centromeric 1 251 -5 247 331 151 36 chr3 204691755 204692033 -13345125 - L2 LINE L2 -1375 1939 1630 2160 120 7 0 chr3 204694169 204694468 -13342690 - AluSg SINE Alu -9 301 1 437 134 0 103 chr3 204694496 204694593 -13342565 + L1MC3 LINE L1 6686 6772 -1013 941 261 60 13 chr3 204694593 204694954 -13342204 - MLT1G3 LTR MaLR -207 330 1 244 332 74 52 chr3 204694961 204695303 -13341855 - L2 LINE L2 -213 3059 2709 989 275 0 19 chr3 204696251 204696513 -13340645 - MIR SINE MIR 0 262 6 2044 127 3 3 chr3 204696987 204697271 -13339887 + AluSg SINE Alu 18 301 -9 2946 194 53 55 chr3 204697274 204698054 -13339104 + L1MC3 LINE L1 7000 7777 -8 297 195 0 23 chr3 204698065 204698152 -13339006 + (TA)n Simple_repeat Simple_repeat 2 86 0 240 109 109 0 chr3 204698160 204698215 -13338943 - LTR66 LTR ERVL -171 439 379 284 286 99 0 chr3 204698771 204698862 -13338296 - MIR3 SINE MIR -46 162 63 544 250 88 96 chr3 204699191 204699723 -13337435 + L1ME4a LINE L1 5550 6077 -44 401 36 18 0 chr3 204699731 204699786 -13337372 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 201 195 0 0 chr3 204700384 204700425 -13336733 + A-rich Low_complexity Low_complexity 1 41 0 * 495 145 0 0 chr3 204700416 204700499 -13336659 + (GGAGA)n Simple_repeat Simple_repeat 5 87 0 339 281 29 58 chr3 204700608 204700747 -13336411 - L2 LINE L2 0 3272 3138 213 379 11 0 chr3 204700733 204700828 -13336330 - MIR SINE MIR -76 132 37 * 890 169 0 7 chr3 204703064 204703206 -13333952 + FRAM SINE Alu 9 149 -27 255 125 0 0 chr3 204703760 204703800 -13333358 + (T)n Simple_repeat Simple_repeat 1 40 0 1215 311 112 44 chr3 204704145 204704349 -13332809 - L2 LINE L2 -13 3300 3111 2161 132 0 0 chr3 204704349 204704652 -13332506 + AluSx SINE Alu 1 303 -9 1215 311 112 44 chr3 204704652 204705007 -13332151 - L2 LINE L2 -202 3111 2781 2135 121 3 3 chr3 204705007 204705314 -13331844 + AluSp SINE Alu 3 309 -4 1215 311 112 44 chr3 204705314 204705608 -13331550 - L2 LINE L2 -532 2781 2508 263 28 28 0 chr3 204705608 204705644 -13331514 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1215 311 112 44 chr3 204705644 204705822 -13331336 - L2 LINE L2 -805 2508 2196 205 333 19 19 chr3 204705858 204705963 -13331195 - MIR3 SINE MIR -5 203 99 890 228 52 14 chr3 204707095 204707306 -13329852 - MIR SINE MIR -42 220 2 226 331 120 14 chr3 204707482 204707624 -13329534 - MIR SINE MIR -74 188 32 276 274 121 16 chr3 204707634 204707758 -13329400 - MIR SINE MIR -3 259 123 216 403 0 0 chr3 204708029 204708106 -13329052 + L3 LINE CR1 943 1019 -558 186 233 97 58 chr3 204708629 204708732 -13328426 + MIR SINE MIR 100 206 -56 191 327 118 20 chr3 204709005 204709158 -13328000 - MIR SINE MIR -48 214 47 2648 10 3 0 chr3 204709820 204710138 -13327020 - AluYb8 SINE Alu 0 319 1 188 156 31 0 chr3 204710142 204710174 -13326984 - L2 LINE L2 -16 3256 3224 2119 114 10 10 chr3 204710263 204710562 -13326596 - AluSx SINE Alu -13 299 1 198 0 0 0 chr3 204710578 204710600 -13326558 + (A)n Simple_repeat Simple_repeat 1 22 0 537 249 124 10 chr3 204710948 204711149 -13326009 + MIR SINE MIR 7 230 -32 388 273 0 45 chr3 204711396 204711528 -13325630 - MIR SINE MIR -41 221 96 2635 254 95 23 chr3 204711895 204711965 -13325193 - L2 LINE L2 -94 3219 3155 1526 152 31 59 chr3 204711965 204712285 -13324873 - AluJb SINE Alu 0 313 2 2635 254 95 23 chr3 204712285 204713324 -13323834 - L2 LINE L2 -158 3155 2044 333 310 117 6 chr3 204713913 204714084 -13323074 - MIR3 SINE MIR -6 202 13 292 265 68 53 chr3 204714108 204714240 -13322918 - MIR SINE MIR -21 241 108 705 252 101 37 chr3 204714439 204714657 -13322501 + MIR SINE MIR 21 252 -10 450 184 46 0 chr3 204714811 204714898 -13322260 - MLT2E LTR ERVL 0 628 538 28 48 0 0 chr3 204715138 204715180 -13321978 + AT_rich Low_complexity Low_complexity 1 42 0 312 289 11 0 chr3 204715180 204715270 -13321888 + L1MC4 LINE L1 6613 6703 -1339 477 256 58 0 chr3 204715289 204715445 -13321713 + L1ME4a LINE L1 5935 6099 -22 2076 131 3 7 chr3 204715447 204715764 -13321394 + AluSq SINE Alu 1 313 0 278 342 94 0 chr3 204715916 204716065 -13321093 - MIR3 SINE MIR -8 200 38 252 247 55 0 chr3 204716852 204716925 -13320233 + MIR SINE MIR 75 151 -111 24 32 0 0 chr3 204716993 204717024 -13320134 + AT_rich Low_complexity Low_complexity 1 31 0 315 348 17 8 chr3 204718792 204718910 -13318248 - L3 LINE CR1 -82 1495 1377 309 357 20 56 chr3 204719391 204719587 -13317571 - MIR3 SINE MIR -1 207 19 421 296 151 16 chr3 204719857 204720043 -13317115 - MIR SINE MIR -42 220 10 461 307 173 13 chr3 204721000 204721225 -13315933 - MIR SINE MIR 0 262 2 193 192 39 77 chr3 204721822 204721874 -13315284 - L2 LINE L2 0 3272 3223 421 255 87 46 chr3 204721889 204722085 -13315073 + MIR SINE MIR 9 212 -50 1571 187 56 0 chr3 204722194 204722312 -13314846 + AluJo SINE Alu 1 111 -207 492 62 0 0 chr3 204722312 204722376 -13314782 + (TA)n Simple_repeat Simple_repeat 2 65 0 1571 187 56 0 chr3 204722376 204722560 -13314598 + AluJo SINE Alu 111 318 0 252 317 83 17 chr3 204723120 204723240 -13313918 - MIR SINE MIR -63 145 18 189 290 75 19 chr3 204723942 204724049 -13313109 + L2 LINE L2 3197 3309 -4 225 108 0 0 chr3 204724180 204724217 -13312941 + (CA)n Simple_repeat Simple_repeat 2 38 0 458 269 175 0 chr3 204724350 204724521 -13312637 + MIR SINE MIR 57 257 -5 193 121 0 30 chr3 204724494 204724527 -13312631 + L2 LINE L2 3235 3266 -6 * 206 313 46 46 chr3 204724779 204724910 -13312248 - MIR SINE MIR -10 252 122 374 354 56 12 chr3 204725090 204725251 -13311907 + MIR SINE MIR 25 192 -70 374 302 66 55 chr3 204725511 204725693 -13311465 + MIR3 SINE MIR 12 195 -13 249 325 12 0 chr3 204726107 204726187 -13310971 + GA-rich Low_complexity Low_complexity 1 81 0 220 205 137 11 chr3 204726210 204726326 -13310832 - MIR SINE MIR -31 231 94 226 227 0 0 chr3 204726464 204726508 -13310650 + L2 LINE L2 3227 3270 -2 2215 119 0 3 chr3 204726527 204726821 -13310337 - AluSx SINE Alu -19 293 1 1605 176 12 22 chr3 204726822 204727105 -13310053 - L1MC3 LINE L1 -777 7008 6727 1544 115 0 13 chr3 204727105 204727340 -13309818 + AluSg/x SINE Alu 79 310 0 1605 176 12 22 chr3 204727340 204727375 -13309783 - L1MC3 LINE L1 -1058 6727 6693 1655 179 29 19 chr3 204727615 204727923 -13309235 - AluJo SINE Alu -1 311 1 307 278 22 33 chr3 204728109 204728199 -13308959 + MIR3 SINE MIR 113 201 -7 202 320 0 13 chr3 204728642 204728717 -13308441 + CT-rich Low_complexity Low_complexity 3 76 0 406 317 78 53 chr3 204729082 204729366 -13307792 - L2 LINE L2 -2 3270 2980 299 317 228 9 chr3 204729363 204729587 -13307571 - L3 LINE CR1 -72 1505 1233 * 534 293 73 76 chr3 204729678 204729831 -13307327 + MLT1J LTR MaLR 7 159 -352 556 187 271 12 chr3 204729831 204729997 -13307161 + MER63A DNA MER1_type 2 210 0 534 293 73 76 chr3 204729997 204730315 -13306843 + MLT1J LTR MaLR 159 480 -31 307 306 33 50 chr3 204731925 204732105 -13305053 - MER115 DNA AcHobo -421 272 96 423 271 31 23 chr3 204732185 204732335 -13304823 - MIR3 SINE MIR -2 206 55 205 231 0 0 chr3 204732328 204732367 -13304791 + L2 LINE L2 3221 3259 -13 * 497 241 86 12 chr3 204732509 204732671 -13304487 - MIR3 SINE MIR -17 191 18 597 179 9 0 chr3 204735609 204735858 -13301300 + HSAT4 Satellite centromeric 1 251 -5 280 332 148 35 chr3 204735859 204736142 -13301016 - L2 LINE L2 -1370 1944 1630 1763 107 0 4 chr3 204737392 204737634 -13299524 + AluSx SINE Alu 9 249 -63 761 160 15 8 chr3 204737670 204737801 -13299357 + FRAM SINE Alu 37 168 -8 1335 135 0 0 chr3 204737938 204738131 -13299027 - AluSg/x SINE Alu -29 283 91 704 191 15 0 chr3 204738145 204738276 -13298882 - FLAM_C SINE Alu 0 133 1 1087 175 31 0 chr3 204738517 204738711 -13298447 + MER3 DNA MER1_type 10 209 0 341 155 17 0 chr3 204738668 204738726 -13298432 - MER3 DNA MER1_type -119 90 32 * 404 301 35 28 chr3 204739116 204739259 -13297899 - MIR3 SINE MIR -45 163 20 238 208 115 42 chr3 204740111 204740207 -13296951 + MIR3 SINE MIR 100 202 -6 201 214 0 0 chr3 204740278 204740320 -13296838 + L2 LINE L2 3211 3252 -20 486 0 0 0 chr3 204740510 204740564 -13296594 + (CA)n Simple_repeat Simple_repeat 1 54 0 420 245 42 28 chr3 204741445 204741588 -13295570 - MIR3 SINE MIR -2 206 62 244 294 0 0 chr3 204741585 204741636 -13295522 + L2 LINE L2 3221 3271 -1 * 568 296 12 31 chr3 204741892 204742054 -13295104 - MER115 DNA AcHobo -439 254 96 430 263 31 23 chr3 204742134 204742284 -13294874 - MIR3 SINE MIR -2 206 55 224 205 0 0 chr3 204742277 204742316 -13294842 + L2 LINE L2 3221 3259 -13 * 497 241 86 12 chr3 204742458 204742620 -13294538 - MIR3 SINE MIR -17 191 18 200 297 109 16 chr3 204745223 204745287 -13291871 - MER5B DNA MER1_type -20 158 89 2037 124 7 0 chr3 204747452 204747751 -13289407 - AluSg SINE Alu -9 301 1 445 124 0 103 chr3 204747778 204747875 -13289283 + L1MC3 LINE L1 6686 6772 -1013 1014 252 61 11 chr3 204747875 204748236 -13288922 - MLT1G3 LTR MaLR -207 348 1 256 336 73 50 chr3 204748243 204748594 -13288564 - L2 LINE L2 -213 3059 2700 1013 275 0 19 chr3 204749533 204749795 -13287363 - MIR SINE MIR 0 262 6 183 80 0 0 chr3 204749808 204749833 -13287325 + (T)n Simple_repeat Simple_repeat 1 25 0 1834 147 0 3 chr3 204750271 204750556 -13286602 + AluSg SINE Alu 18 301 -9 402 253 0 0 chr3 204750660 204750747 -13286411 + MLT2B2 LTR ERVL 4 90 -425 2479 175 44 65 chr3 204750768 204751227 -13285931 + MLT2B1 LTR ERVL 1 449 -71 280 62 21 21 chr3 204751227 204751275 -13285883 + (TA)n Simple_repeat Simple_repeat 2 49 0 2479 175 44 65 chr3 204751275 204751334 -13285824 + MLT2B1 LTR ERVL 449 508 -12 315 277 79 30 chr3 204751353 204751454 -13285704 + L1MC4 LINE L1 6604 6709 -1333 198 171 0 0 chr3 204751468 204751509 -13285649 + (CA)n Simple_repeat Simple_repeat 1 41 0 317 303 116 32 chr3 204751710 204751865 -13285293 + MIR3 SINE MIR 35 202 -6 263 252 209 17 chr3 204752054 204752169 -13284989 - L2 LINE L2 -4 3268 3132 378 286 6 30 chr3 204752266 204752434 -13284724 - L1M4 LINE L1 -3241 2905 2742 710 311 80 0 chr3 204752500 204752738 -13284420 + MIR SINE MIR 6 262 0 1820 207 91 14 chr3 204752749 204752959 -13284199 + L1MD2 LINE L1 5908 6100 -259 240 111 0 0 chr3 204752959 204752995 -13284163 + (CA)n Simple_repeat Simple_repeat 2 37 0 1820 207 91 14 chr3 204752995 204753200 -13283958 + L1MD2 LINE L1 6100 6355 -4 265 341 40 8 chr3 204753696 204753822 -13283336 - MIR3 SINE MIR -31 177 48 2327 123 6 49 chr3 204754206 204754781 -13282377 - MER51A LTR ERV1 0 634 1 306 305 134 6 chr3 204754841 204755005 -13282153 + MIR SINE MIR 7 191 -71 553 301 141 16 chr3 204756038 204756287 -13280871 - L3 LINE CR1 -13 1564 1285 327 316 51 0 chr3 204756874 204756991 -13280167 + MIR SINE MIR 86 208 -54 2643 149 33 18 chr3 204757127 204757576 -13279582 + MLT1C LTR MaLR 9 464 -3 1541 96 5 0 chr3 204757806 204758014 -13279144 - L1PA7 LINE L1 -7 6147 5939 288 289 144 0 chr3 204758182 204758286 -13278872 + MIR3 SINE MIR 84 202 -6 2213 99 0 0 chr3 204759351 204759659 -13277499 - AluSx SINE Alu 0 308 1 813 148 54 20 chr3 204759886 204760068 -13277090 + FRAM SINE Alu 1 185 0 201 278 68 68 chr3 204760128 204760290 -13276868 + MIR3 SINE MIR 41 202 -6 181 284 101 18 chr3 204761218 204761327 -13275831 - MIR3 SINE MIR -27 181 64 1679 113 0 4 chr3 204761660 204761898 -13275260 + AluSx SINE Alu 1 237 -75 249 57 0 0 chr3 204761911 204761946 -13275212 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 203 79 26 0 chr3 204762793 204762831 -13274327 + (TA)n Simple_repeat Simple_repeat 2 40 0 1247 169 28 16 chr3 204764187 204764442 -13272716 + L1MC3 LINE L1 7514 7771 -14 274 316 83 8 chr3 204764571 204764704 -13272454 + MIR3 SINE MIR 66 208 0 561 251 105 0 chr3 204764713 204764884 -13272274 - MIR SINE MIR -1 261 73 805 184 199 10 chr3 204765022 204765218 -13271940 - MER58 DNA MER1_type -2185 235 3 253 306 0 0 chr3 204765416 204765478 -13271680 + L2 LINE L2 3252 3313 0 233 135 0 0 chr3 204765535 204765572 -13271586 - MIR3 SINE MIR -43 165 129 277 303 0 46 chr3 204766071 204766180 -13270978 + (CCCG)n Simple_repeat Simple_repeat 4 107 0 552 233 0 41 chr3 204766205 204766351 -13270807 + (CCCG)n Simple_repeat Simple_repeat 1 140 0 496 255 20 47 chr3 204766761 204766910 -13270248 + MIR3 SINE MIR 41 185 -23 257 375 66 22 chr3 204768736 204768872 -13268286 - L2 LINE L2 -5 3267 3126 182 211 0 0 chr3 204771057 204771095 -13266063 - MIR SINE MIR -76 132 95 248 227 34 68 chr3 204771220 204771308 -13265850 - MIR SINE MIR -66 196 112 284 244 51 0 chr3 204771452 204771530 -13265628 + MIR SINE MIR 37 118 -144 316 350 128 18 chr3 204771593 204771819 -13265339 + L3 LINE CR1 1226 1476 -101 241 254 42 0 chr3 204771887 204771958 -13265200 + MIR SINE MIR 74 147 -61 184 367 76 25 chr3 204772053 204772132 -13265026 - L2 LINE L2 -74 3198 3116 216 274 16 16 chr3 204772247 204772309 -13264849 - L2 LINE L2 -217 3055 2994 612 288 51 6 chr3 204772898 204773078 -13264080 - MIR SINE MIR 0 262 76 713 297 60 0 chr3 204773467 204773652 -13263506 + MIR SINE MIR 67 262 0 249 358 0 28 chr3 204773756 204773865 -13263293 + MIR SINE MIR 100 205 -57 213 39 0 0 chr3 204774198 204774224 -13262934 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 187 324 73 44 chr3 204774792 204774860 -13262298 - L2 LINE L2 -12 3301 3232 2039 114 3 13 chr3 204774883 204775191 -13261967 - AluSg SINE Alu -5 305 1 255 309 218 0 chr3 204775225 204775335 -13261823 + MIR SINE MIR 68 201 -61 340 287 31 47 chr3 204776178 204776307 -13260851 - MIR SINE MIR -64 198 72 229 276 55 76 chr3 204777730 204777875 -13259283 - MIR3 SINE MIR -37 171 30 503 73 21 21 chr3 204778170 204778266 -13258892 + (GA)n Simple_repeat Simple_repeat 2 97 0 207 0 0 0 chr3 204778602 204778625 -13258533 + (T)n Simple_repeat Simple_repeat 1 23 0 274 111 78 0 chr3 204778967 204779027 -13258131 - MIR SINE MIR -115 93 27 226 306 171 9 chr3 204781447 204781558 -13255600 + MIR3 SINE MIR 27 155 -53 21 36 0 0 chr3 204784182 204784210 -13252948 + GC_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr3 204784647 204784670 -13252488 + GC_rich Low_complexity Low_complexity 1 23 0 224 307 11 23 chr3 204785587 204785675 -13251483 + GA-rich Low_complexity Low_complexity 3 89 0 384 190 0 0 chr3 204786173 204786252 -13250906 + (CAG)n Simple_repeat Simple_repeat 2 80 0 342 67 0 0 chr3 204791467 204791512 -13245646 + (CA)n Simple_repeat Simple_repeat 2 46 0 276 275 101 18 chr3 204791516 204791625 -13245533 + MIR3 SINE MIR 48 165 -43 183 266 0 0 chr3 204792090 204792154 -13245004 + GA-rich Low_complexity Low_complexity 1 64 0 317 278 22 33 chr3 204792606 204792696 -13244462 - MIR3 SINE MIR -7 201 113 1702 179 29 19 chr3 204792882 204793190 -13243968 + AluJo SINE Alu 1 311 -1 2199 175 25 96 chr3 204793430 204793469 -13243689 + L1MC3 LINE L1 6693 6733 -1052 1697 113 0 0 chr3 204793469 204793699 -13243459 - AluSg/x SINE Alu -2 308 79 2199 175 25 96 chr3 204793699 204793983 -13243175 + L1MC3 LINE L1 6733 6950 -835 2420 89 3 3 chr3 204793983 204794286 -13242872 + AluSx SINE Alu 1 303 -9 2199 175 25 96 chr3 204794286 204794606 -13242552 + L1MC3 LINE L1 6950 7291 -494 283 268 16 49 chr3 204844637 204844820 -13192338 + C-rich Low_complexity Low_complexity 2 178 0 * 289 241 15 36 chr3 204844713 204844850 -13192308 + (CCCCG)n Simple_repeat Simple_repeat 4 137 0 541 252 46 20 chr3 204845069 204845220 -13191938 - MIR3 SINE MIR -18 190 36 238 280 40 50 chr3 204846242 204846342 -13190816 - L2 LINE L2 -38 3234 3136 2196 107 0 10 chr3 204846522 204846813 -13190345 - AluSg SINE Alu -22 288 1 280 244 31 16 chr3 204846930 204847057 -13190101 + T-rich Low_complexity Low_complexity 2 130 0 631 264 11 39 chr3 204847744 204847922 -13189236 + MIR SINE MIR 16 188 -74 2419 232 41 63 chr3 204848273 204849143 -13188015 + Zaphod DNA AcHobo 11 861 -3170 2167 119 0 7 chr3 204849147 204849449 -13187709 - AluSx SINE Alu -12 300 1 259 292 68 43 chr3 204849472 204849633 -13187525 - L1ME LINE L1 -267 5854 5690 4487 131 23 0 chr3 204849671 204850371 -13186787 - L1PA16 LINE L1 -9 6157 5442 7688 37 0 2 chr3 204850571 204852272 -13184886 - L1PA3 LINE L1 0 6155 4457 23 33 0 0 chr3 204852480 204852510 -13184648 + GC_rich Low_complexity Low_complexity 1 30 0 45 45 0 0 chr3 204852540 204852606 -13184552 + GC_rich Low_complexity Low_complexity 1 66 0 254 178 68 55 chr3 204853125 204853198 -13183960 - L3 LINE CR1 -1 1576 1503 2120 123 7 3 chr3 204853444 204853737 -13183421 + AluJb SINE Alu 1 294 -18 407 236 152 14 chr3 204853793 204853969 -13183189 + MIR SINE MIR 2 212 -50 2239 92 0 25 chr3 204854977 204855294 -13181864 - AluSc SINE Alu 0 309 1 238 333 54 11 chr3 204855420 204855513 -13181645 - MIR3 SINE MIR -4 204 108 249 265 70 113 chr3 204855643 204855828 -13181330 + MIR3 SINE MIR 11 175 -33 21 0 0 0 chr3 204856198 204856219 -13180939 + AT_rich Low_complexity Low_complexity 1 21 0 603 217 169 32 chr3 204856359 204856548 -13180610 - MIR SINE MIR -41 221 7 361 380 26 37 chr3 204856625 204856975 -13180183 - L2 LINE L2 -405 2909 2564 264 272 108 25 chr3 204857203 204857342 -13179816 - MIR SINE MIR 0 208 58 37 86 0 0 chr3 204857554 204857647 -13179511 + GC_rich Low_complexity Low_complexity 1 93 0 366 333 0 38 chr3 204857686 204857845 -13179313 + C-rich Low_complexity Low_complexity 4 156 0 430 163 16 79 chr3 204858203 204858393 -13178765 + (CGGGG)n Simple_repeat Simple_repeat 2 179 0 273 243 0 0 chr3 204858417 204858524 -13178634 + G-rich Low_complexity Low_complexity 1 107 0 354 282 36 22 chr3 204858649 204858929 -13178229 + L1ME LINE L1 5541 5827 -303 469 301 70 0 chr3 204859162 204859305 -13177853 - MIR3 SINE MIR -7 201 49 365 294 12 56 chr3 204859605 204859765 -13177393 - L2 LINE L2 -3 3310 3158 275 333 131 24 chr3 204860011 204860308 -13176850 - L2 LINE L2 -1459 1855 1527 948 246 26 43 chr3 204860416 204860766 -13176392 + MLT1A1 LTR MaLR 1 344 -21 428 267 62 50 chr3 204860782 204860943 -13176215 - MIR3 SINE MIR -42 166 4 349 348 6 12 chr3 204861677 204861841 -13175317 + C-rich Low_complexity Low_complexity 5 167 0 203 327 19 39 chr3 204861776 204861932 -13175226 + (CCCCG)n Simple_repeat Simple_repeat 5 157 0 * 304 56 0 0 chr3 204862528 204862564 -13174594 + (A)n Simple_repeat Simple_repeat 1 36 0 235 284 104 30 chr3 204863780 204863914 -13173244 - L2 LINE L2 -212 3060 2917 206 324 0 54 chr3 204864022 204864096 -13173062 - L2 LINE L2 -649 2665 2596 21 67 0 0 chr3 204864300 204864330 -13172828 + GC_rich Low_complexity Low_complexity 1 30 0 367 191 28 56 chr3 204864369 204864575 -13172583 + (CCCCG)n Simple_repeat Simple_repeat 1 200 0 21 0 0 0 chr3 204865119 204865140 -13172018 + GC_rich Low_complexity Low_complexity 1 21 0 1470 185 0 67 chr3 204865475 204865788 -13171370 - AluJo SINE Alu -20 292 1 484 196 168 56 chr3 204865965 204866108 -13171050 + MIR3 SINE MIR 30 188 -20 258 233 43 25 chr3 204866616 204866779 -13170379 + (CCGCG)n Simple_repeat Simple_repeat 4 169 0 272 233 0 0 chr3 204867025 204867085 -13170073 + MER5A DNA MER1_type 130 189 0 1462 88 5 19 chr3 204867948 204868163 -13168995 - L1PA7 LINE L1 -3 6151 5940 854 250 19 0 chr3 204868174 204868434 -13168724 - L1P LINE L1 -2979 3167 2903 197 283 248 55 chr3 204869122 204869267 -13167891 - L2 LINE L2 0 3272 3100 226 200 0 0 chr3 204869550 204869590 -13167568 + MIR SINE MIR 215 254 -8 220 231 19 0 chr3 204869636 204869688 -13167470 - L2 LINE L2 -303 2969 2917 187 167 0 0 chr3 204871563 204871593 -13165565 + T-rich Low_complexity Low_complexity 1 30 0 1018 238 81 40 chr3 204872150 204872500 -13164658 + MLT1D LTR MaLR 88 344 -46 210 214 18 36 chr3 204872501 204872557 -13164601 - L2 LINE L2 -11 3261 3207 712 263 150 30 chr3 204872588 204872995 -13164163 - LTR33A LTR ERVL 0 523 68 487 179 105 0 chr3 204873071 204873166 -13163992 + MLT1J1 LTR MaLR 81 185 -261 25 51 0 0 chr3 204873454 204873493 -13163665 + GC_rich Low_complexity Low_complexity 1 39 0 841 246 87 0 chr3 204875508 204875703 -13161455 - MIR SINE MIR -49 213 2 273 327 13 20 chr3 204876364 204876517 -13160641 + CT-rich Low_complexity Low_complexity 2 153 0 * 352 347 0 17 chr3 204876410 204876586 -13160572 + C-rich Low_complexity Low_complexity 2 174 0 634 214 31 82 chr3 204877404 204877600 -13159558 - MIR3 SINE MIR -7 201 16 485 270 74 12 chr3 204877918 204878081 -13159077 + MLT2F LTR ERVL 1 173 -490 273 192 0 0 chr3 204879170 204879222 -13157936 + MIR SINE MIR 102 153 -109 237 277 15 15 chr3 204879920 204879985 -13157173 - MIR SINE MIR -58 150 86 450 228 65 41 chr3 204880304 204880427 -13156731 - L2 LINE L2 0 3313 3188 285 373 13 7 chr3 204880784 204880934 -13156224 + C-rich Low_complexity Low_complexity 4 154 0 21 0 0 0 chr3 204881437 204881458 -13155700 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 204882695 204882717 -13154441 + AT_rich Low_complexity Low_complexity 1 22 0 528 267 42 55 chr3 204882741 204882958 -13154200 - MIR SINE MIR -43 219 6 323 221 19 106 chr3 204882974 204883078 -13154080 + MIR3 SINE MIR 87 181 -27 1612 180 10 0 chr3 204883793 204884087 -13153071 - AluJb SINE Alu -15 297 1 331 348 39 0 chr3 204884237 204884392 -13152766 - MIR3 SINE MIR -27 181 21 286 218 40 134 chr3 204887540 204887742 -13149416 + MLT1J1 LTR MaLR 5 187 -439 855 185 73 0 chr3 204888185 204888336 -13148822 - AluJo SINE Alu -149 163 2 212 309 29 0 chr3 204888343 204888411 -13148747 - MER5A DNA MER1_type -118 71 2 188 247 65 32 chr3 204888445 204888538 -13148620 - MIR3 SINE MIR -102 106 11 211 261 29 58 chr3 204888782 204888851 -13148307 - L2 LINE L2 -1 3271 3205 27 73 0 0 chr3 204888950 204889005 -13148153 + GC_rich Low_complexity Low_complexity 1 55 0 228 213 43 11 chr3 204889017 204889111 -13148047 + (CGCGG)n Simple_repeat Simple_repeat 5 101 0 39 87 0 20 chr3 204889111 204889260 -13147898 + GC_rich Low_complexity Low_complexity 1 146 0 195 384 103 22 chr3 204889664 204889849 -13147309 + L3 LINE CR1 1370 1569 -8 27 81 0 0 chr3 204890231 204890293 -13146865 + GC_rich Low_complexity Low_complexity 1 62 0 1829 131 25 0 chr3 204890897 204891179 -13145979 - AluSx SINE Alu -23 289 1 246 62 0 0 chr3 204892418 204892450 -13144708 + (TTTC)n Simple_repeat Simple_repeat 1 32 0 189 0 0 0 chr3 204892482 204892503 -13144655 + (TG)n Simple_repeat Simple_repeat 1 21 0 * 240 35 0 0 chr3 204892502 204892531 -13144627 + (GA)n Simple_repeat Simple_repeat 1 29 0 377 257 27 61 chr3 204892759 204892907 -13144251 - MIR SINE MIR -3 259 117 298 89 44 0 chr3 204893073 204893118 -13144040 + MLT1J1 LTR MaLR 139 185 -261 343 333 58 46 chr3 204894145 204894319 -13142839 - MIR3 SINE MIR -14 194 19 309 299 26 17 chr3 204894729 204894846 -13142312 - MIR3 SINE MIR -5 203 86 464 333 47 12 chr3 204895167 204895338 -13141820 + MIR3 SINE MIR 30 206 -2 316 309 82 0 chr3 204896656 204896753 -13140405 - MIR3 SINE MIR -19 189 85 233 261 58 0 chr3 204897930 204897999 -13139159 - L2 LINE L2 -189 3083 3011 529 288 63 16 chr3 204898051 204898242 -13138916 - MIR SINE MIR -6 256 57 200 336 100 23 chr3 204898353 204898573 -13138585 - L2 LINE L2 -509 2805 2569 911 256 45 21 chr3 204899420 204899662 -13137496 - MIR SINE MIR -7 255 8 290 345 27 9 chr3 204900344 204900454 -13136704 + MIR SINE MIR 16 127 -81 508 287 74 62 chr3 204900460 204900718 -13136440 - MIR SINE MIR 0 262 2 217 143 48 0 chr3 204901109 204901151 -13136007 + L2 LINE L2 3229 3272 0 391 281 9 65 chr3 204902255 204902398 -13134760 - MIR SINE MIR -63 145 25 1081 286 137 15 chr3 204902624 204903085 -13134073 + LTR33 LTR ERVL 5 521 0 210 284 111 0 chr3 204903211 204903292 -13133866 + MIR SINE MIR 4 93 -169 189 0 0 0 chr3 204903789 204903810 -13133348 + (TC)n Simple_repeat Simple_repeat 2 22 0 491 259 154 6 chr3 204904157 204904319 -13132839 + MER5A DNA MER1_type 4 189 0 239 274 44 2 chr3 204905130 204905213 -13131945 - MIR3 SINE MIR -32 176 100 213 39 0 0 chr3 204905886 204905912 -13131246 + (TG)n Simple_repeat Simple_repeat 2 27 0 345 294 111 7 chr3 204906348 204906501 -13130657 + MIR3 SINE MIR 5 173 -35 196 316 0 68 chr3 204906648 204906765 -13130393 - MIR SINE MIR -44 218 110 232 284 104 30 chr3 204907665 204907799 -13129359 + L2 LINE L2 2917 3060 -212 199 291 23 58 chr3 204907885 204907971 -13129187 + L2 LINE L2 3096 3178 -94 514 283 137 67 chr3 204908558 204908694 -13128464 + L3 LINE CR1 1240 1365 -212 780 204 31 6 chr3 204908694 204908856 -13128302 - FAM SINE Alu -9 166 1 514 283 137 67 chr3 204908856 204909034 -13128124 + L3 LINE CR1 1365 1576 -1 193 303 135 0 chr3 204909593 204909682 -13127476 + MIR SINE MIR 57 157 -105 387 300 42 17 chr3 204910789 204910909 -13126249 + MIR3 SINE MIR 10 132 -76 682 211 11 0 chr3 204912560 204912735 -13124423 + GA-rich Low_complexity Low_complexity 4 180 0 277 260 67 39 chr3 204913350 204913454 -13123704 - MIR SINE MIR -57 151 45 261 268 12 37 chr3 204913467 204913549 -13123609 + MIR SINE MIR 182 261 -1 600 323 123 16 chr3 204915599 204915915 -13121243 - MLT1J LTR MaLR -31 480 131 526 167 125 8 chr3 204915963 204916083 -13121075 - MER63 DNA MER1_type -75 761 2 280 270 0 145 chr3 204916084 204916236 -13120922 - MLT1J LTR MaLR -375 136 7 322 313 228 9 chr3 204916327 204916551 -13120607 + L3 LINE CR1 1233 1505 -72 * 416 317 78 53 chr3 204916548 204916832 -13120326 + L2 LINE L2 2980 3270 -2 22 88 0 0 chr3 204917098 204917155 -13120003 + AT_rich Low_complexity Low_complexity 1 57 0 613 171 24 18 chr3 204917167 204917337 -13119821 + GA-rich Low_complexity Low_complexity 3 173 0 1069 331 103 42 chr3 204917386 204918502 -13118656 + L2 LINE L2 1773 2956 -358 493 154 132 0 chr3 204918568 204918659 -13118499 - L2 LINE L2 -1 3271 3169 187 300 0 20 chr3 204918642 204918692 -13118466 + L2 LINE L2 3021 3069 -203 * 919 218 13 40 chr3 204918764 204918989 -13118169 - MER58A DNA MER1_type -5 219 1 243 329 37 0 chr3 204919013 204919095 -13118063 + L2 LINE L2 3188 3272 0 37385 32 3 0 chr3 204919640 204924627 -13112531 + L1PA3 LINE L1 947 5954 -201 2040 114 0 25 chr3 204924837 204925154 -13112004 + AluSc SINE Alu 1 309 0 1558 139 158 16 chr3 204925508 204925824 -13111334 - MER46B DNA MER2_type 0 236 1 251 316 97 9 chr3 204925850 204925964 -13111194 + MIR SINE MIR 22 145 -63 1181 180 129 18 chr3 204926188 204926466 -13110692 + AluJo SINE Alu 1 309 -3 782 259 151 74 chr3 204926712 204927021 -13110137 + L2 LINE L2 2574 2858 -455 2483 42 0 6 chr3 204927021 204927334 -13109824 + AluY SINE Alu 1 311 0 782 259 151 74 chr3 204927334 204927684 -13109474 + L2 LINE L2 2858 3309 -4 22 35 0 0 chr3 204927773 204927802 -13109356 + AT_rich Low_complexity Low_complexity 1 29 0 332 261 25 108 chr3 204928280 204928437 -13108721 + MIR SINE MIR 21 164 -98 2154 109 0 3 chr3 204928675 204928969 -13108189 + AluSx SINE Alu 1 293 -19 233 227 0 0 chr3 204928988 204929032 -13108126 - L2 LINE L2 -2 3270 3227 222 205 137 11 chr3 204929170 204929286 -13107872 + MIR SINE MIR 94 231 -31 249 325 12 0 chr3 204929309 204929389 -13107769 + CT-rich Low_complexity Low_complexity 1 81 0 376 291 99 44 chr3 204929803 204929985 -13107173 - MIR3 SINE MIR -13 195 4 390 354 56 12 chr3 204930245 204930406 -13106752 - MIR SINE MIR -70 192 25 220 313 46 46 chr3 204930586 204930717 -13106441 + MIR SINE MIR 122 252 -10 243 319 135 14 chr3 204931501 204931642 -13105516 + MIR3 SINE MIR 51 208 0 1999 133 0 7 chr3 204931861 204932163 -13104995 - AluSx SINE Alu -12 300 1 185 303 63 15 chr3 204932369 204932472 -13104686 - L2 LINE L2 -73 3199 3090 1008 133 0 53 chr3 204933091 204933279 -13103879 - pTR5 LTR ERV1 -1519 919 742 182 216 27 0 chr3 204933426 204933463 -13103695 - L2 LINE L2 -22 3250 3213 221 256 90 0 chr3 204933485 204933563 -13103595 - MIR SINE MIR -126 136 52 232 362 26 17 chr3 204933876 204933992 -13103166 + L2 LINE L2 3141 3257 -15 293 244 44 0 chr3 204934667 204934757 -13102401 + MIR SINE MIR 41 134 -74 1054 175 4 75 chr3 204934932 204935160 -13101998 - MER20 DNA MER1_type -4 215 4 260 298 29 29 chr3 204935313 204935417 -13101741 + MIR SINE MIR 20 123 -139 205 350 12 0 chr3 204936460 204936540 -13100618 - MIR SINE MIR -75 187 107 1961 63 78 7 chr3 204937491 204937760 -13099398 + L1PA8 LINE L1 5880 6167 -5 21 0 0 0 chr3 204937789 204937810 -13099348 + AT_rich Low_complexity Low_complexity 1 21 0 1558 215 58 58 chr3 204939521 204939975 -13097183 + MLT1D LTR MaLR 5 344 -46 185 214 18 36 chr3 204939976 204940032 -13097126 - L2 LINE L2 -11 3261 3207 1143 254 115 53 chr3 204940063 204940551 -13096607 - LTR33A LTR ERVL 0 523 6 546 158 105 0 chr3 204940559 204940654 -13096504 + MLT1J1 LTR MaLR 81 185 -261 328 335 117 4 chr3 204940744 204941178 -13095980 + L2 LINE L2 2770 3248 -65 726 243 160 21 chr3 204941190 204941528 -13095630 + MLT1J1 LTR MaLR 15 399 -47 258 284 0 0 chr3 204941549 204941616 -13095542 + L2 LINE L2 3245 3311 -2 224 350 70 0 chr3 204941685 204941785 -13095373 + L2 LINE L2 3199 3305 -8 2201 115 0 0 chr3 204942061 204942356 -13094802 - AluSx SINE Alu -17 295 1 542 244 31 67 chr3 204943748 204943941 -13093217 - MIR3 SINE MIR -7 201 16 664 301 41 32 chr3 204944262 204944680 -13092478 + MLT2E LTR ERVL 1 658 -5 762 251 68 34 chr3 204944802 204945037 -13092121 - MIR SINE MIR -4 258 16 280 244 31 16 chr3 204945724 204945851 -13091307 + A-rich Low_complexity Low_complexity 2 130 0 2265 115 0 10 chr3 204945968 204946281 -13090877 + AluSg SINE Alu 1 310 0 242 263 26 0 chr3 204946398 204946474 -13090684 - MIR3 SINE MIR -22 186 109 2050 122 0 14 chr3 204946904 204947220 -13089938 - AluSx SINE Alu 0 312 1 254 298 68 43 chr3 204947243 204947404 -13089754 - L1ME LINE L1 -267 5854 5690 5579 122 18 8 chr3 204947442 204948844 -13088314 - L1PA16 LINE L1 -9 6157 4734 1528 196 0 0 chr3 204948893 204949194 -13087964 - L1 LINE L1 -1401 4745 4445 2223 90 0 4 chr3 204949194 204949498 -13087660 - AluSc SINE Alu 0 303 1 385 186 0 14 chr3 204950286 204950356 -13086802 + Tigger2 DNA MER2_type 1 69 -2649 * 2822 129 35 2 chr3 204950354 204950779 -13086379 + Tigger2 DNA MER2_type 2280 2718 0 180 111 0 0 chr3 204951775 204951802 -13085356 + (CA)n Simple_repeat Simple_repeat 1 27 0 288 374 32 11 chr3 204952225 204952415 -13084743 - MIR SINE MIR -56 206 13 212 196 54 0 chr3 204952486 204952542 -13084616 - MIR SINE MIR -64 144 86 311 321 87 50 chr3 204953090 204953411 -13083747 - L2 LINE L2 -645 2669 2337 246 313 91 0 chr3 204953734 204953833 -13083325 + MIR SINE MIR 37 144 -64 341 288 0 0 chr3 204954387 204954467 -13082691 - L2 LINE L2 -42 3271 3192 2268 107 7 0 chr3 204954567 204954875 -13082283 - AluSx SINE Alu -2 310 1 185 94 31 0 chr3 204955046 204955078 -13082080 + A-rich Low_complexity Low_complexity 4 36 0 203 279 93 0 chr3 204956298 204956384 -13080774 - MIR SINE MIR -108 154 61 198 0 0 0 chr3 204956504 204956526 -13080632 + (A)n Simple_repeat Simple_repeat 1 22 0 252 295 137 22 chr3 204956814 204956953 -13080205 + MIR3 SINE MIR 6 160 -48 1749 155 53 85 chr3 204957007 204957406 -13079752 + MLT1B LTR MaLR 1 386 -4 194 0 0 37 chr3 204957578 204957605 -13079553 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1806 133 42 4 chr3 204957612 204957876 -13079282 - AluSx SINE Alu -38 274 1 480 281 117 0 chr3 204957946 204958117 -13079041 + MER63A DNA MER1_type 1 191 -19 2269 116 0 0 chr3 204959736 204960037 -13077121 - AluSq SINE Alu -12 301 1 1161 245 65 81 chr3 204960037 204960813 -13076345 + L2 LINE L2 2518 3259 -54 449 181 87 27 chr3 204960858 204960975 -13076183 - L1MC4 LINE L1 -2 8039 7875 268 255 16 64 chr3 204961130 204961283 -13075875 - MIR3 SINE MIR -71 137 13 244 228 0 0 chr3 204961715 204961772 -13075386 + MIR SINE MIR 96 152 -110 265 368 17 37 chr3 204962056 204962355 -13074803 + L2 LINE L2 2564 2856 -458 570 215 215 19 chr3 204962483 204962697 -13074461 + MIR SINE MIR 7 262 0 271 301 15 66 chr3 204962869 204963005 -13074153 + L2 LINE L2 3143 3271 -1 180 203 78 16 chr3 204963278 204963342 -13073816 + MIR SINE MIR 39 106 -102 545 247 38 27 chr3 204963376 204963450 -13073708 + MER5A DNA MER1_type 2 74 -115 1669 185 38 0 chr3 204963450 204963742 -13073416 + AluJo SINE Alu 1 303 -9 545 247 38 27 chr3 204963742 204963853 -13073305 + MER5A DNA MER1_type 74 189 0 1493 84 5 14 chr3 204964720 204964934 -13072224 - L1PA7 LINE L1 -3 6151 5940 6816 95 5 11 chr3 204964946 204965928 -13071230 - L1P LINE L1 -2979 3167 2192 187 232 54 0 chr3 204966324 204966380 -13070778 + MIR SINE MIR 104 162 -100 346 234 144 14 chr3 204966470 204966633 -13070525 - MIR SINE MIR -50 212 20 2101 123 7 3 chr3 204966702 204966995 -13070163 - AluJb SINE Alu -18 294 1 221 178 68 55 chr3 204967241 204967314 -13069844 + L3 LINE CR1 1503 1576 -1 268 354 78 39 chr3 204967666 204967923 -13069235 - L3 LINE CR1 -3 1574 1308 240 281 0 4 chr3 204968649 204968733 -13068425 + MIR SINE MIR 64 147 -61 189 196 0 0 chr3 204969160 204969206 -13067952 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 211 200 0 0 chr3 204969621 204969661 -13067497 + MIR SINE MIR 215 254 -8 193 242 48 0 chr3 204969697 204969759 -13067399 - L2 LINE L2 -291 2981 2917 314 313 143 22 chr3 204969911 204970135 -13067023 + Charlie7 DNA MER1_type 5 255 -2357 1409 249 25 13 chr3 204970166 204970563 -13066595 + Charlie7 DNA MER1_type 322 723 -1889 518 273 77 11 chr3 204971227 204971410 -13065748 + MIR SINE MIR 10 204 -58 2164 66 0 0 chr3 204971410 204971711 -13065447 + AluY SINE Alu 24 324 0 1107 161 5 2 chr3 204972160 204972399 -13064759 - LTR54 LTR ERV1 0 510 238 859 134 7 0 chr3 204972436 204972578 -13064580 - L1MA4A LINE L1 -2 6301 6159 917 189 5 30 chr3 204972588 204972789 -13064369 - L1MA4A LINE L1 -262 6041 5846 933 179 68 51 chr3 204972809 204973044 -13064114 - LTR54 LTR ERV1 -271 239 1 443 227 131 40 chr3 204973256 204973454 -13063704 - Zaphod DNA AcHobo -824 3207 2992 999 147 13 0 chr3 204973532 204973689 -13063469 - FRAM SINE Alu -4 172 14 200 204 0 0 chr3 204974312 204974356 -13062802 + (TTAG)n Simple_repeat Simple_repeat 3 46 0 234 292 123 63 chr3 204974424 204974708 -13062450 + L1ME LINE L1 5603 5903 -218 1541 195 82 59 chr3 204975592 204976115 -13061043 - Zaphod DNA AcHobo -518 3513 2979 673 123 13 39 chr3 204976133 204976288 -13060870 + (TTCC)n Simple_repeat Simple_repeat 3 153 0 1233 211 0 33 chr3 204976292 204976562 -13060596 - AluJo SINE Alu -39 273 13 3731 182 141 26 chr3 204976575 204977598 -13059560 - Zaphod DNA AcHobo -1036 2995 1856 3303 225 43 75 chr3 204977622 204977775 -13059383 - Zaphod DNA AcHobo -2887 1144 988 955 180 44 34 chr3 204977775 204977981 -13059177 - MER3 DNA MER1_type -1 208 1 3303 225 43 75 chr3 204977981 204978123 -13059035 - Zaphod DNA AcHobo -3043 988 843 2312 76 0 3 chr3 204978123 204978414 -13058744 + AluY SINE Alu 16 305 -6 3303 225 43 75 chr3 204978414 204979289 -13057869 - Zaphod DNA AcHobo -3188 843 11 326 318 13 32 chr3 204979469 204979623 -13057535 - MIR SINE MIR -79 183 33 446 305 20 112 chr3 204980094 204980488 -13056670 + L2 LINE L2 2914 3271 -1 206 284 15 0 chr3 204981668 204981735 -13055423 + MIR3 SINE MIR 4 71 -137 261 311 31 66 chr3 204982368 204982564 -13054594 - MIR SINE MIR -71 191 3 203 333 95 12 chr3 204982694 204982778 -13054380 - MIR3 SINE MIR -4 204 114 241 283 51 54 chr3 204982821 204982970 -13054188 + MIR SINE MIR 45 191 -63 210 202 262 12 chr3 204983332 204983416 -13053742 - L2 LINE L2 -7 3265 3161 300 316 98 30 chr3 204983764 204983897 -13053261 - MIR3 SINE MIR -58 150 9 420 243 19 19 chr3 204984028 204984131 -13053027 + MIR3 SINE MIR 86 188 -20 423 240 46 78 chr3 204984901 204985068 -13052090 + MIR SINE MIR 31 196 -66 352 339 0 41 chr3 204985145 204985266 -13051892 - L3 LINE CR1 -206 1371 1256 269 322 23 0 chr3 204986055 204986142 -13051016 + L3 LINE CR1 1478 1566 -11 188 261 54 65 chr3 204986969 204987061 -13050097 + L2 LINE L2 2970 3060 -212 25 31 0 0 chr3 204987438 204987470 -13049688 + AT_rich Low_complexity Low_complexity 1 32 0 305 226 101 113 chr3 204987628 204987955 -13049203 + L1ME4a LINE L1 5591 5913 -208 469 337 26 5 chr3 204988676 204988869 -13048289 - MIR SINE MIR -46 216 20 316 299 104 39 chr3 204989774 204989901 -13047257 + L1ME3A LINE L1 1181 1298 -5232 2353 91 3 0 chr3 204989901 204990198 -13046960 + AluSx SINE Alu 1 298 -14 316 299 104 39 chr3 204990198 204990301 -13046857 + L1ME3A LINE L1 1298 1426 -5104 10831 79 6 9 chr3 204990316 204992490 -13044668 + L1PA7 LINE L1 3985 6154 0 43772 33 21 2 chr3 204992650 204998687 -13038471 + L1PA2 LINE L1 1 6155 0 600 295 58 30 chr3 204998859 204999252 -13037906 + HAL1 LINE L1 1231 1634 -873 318 182 53 83 chr3 204999570 204999702 -13037456 + L1ME3A LINE L1 2452 2579 -3961 234 261 84 35 chr3 204999836 204999978 -13037180 + L1ME3A LINE L1 4031 4179 -2361 617 255 26 74 chr3 205000038 205000348 -13036810 + L1ME3A LINE L1 4504 4798 -1742 356 289 27 71 chr3 205000533 205000758 -13036400 - L1ME LINE L1 -5590 480 266 248 264 139 8 chr3 205000826 205000955 -13036203 - L1ME LINE L1 -5883 187 42 * 729 291 61 28 chr3 205000954 205001349 -13035809 + L1ME3A LINE L1 5927 6334 -230 21 36 0 0 chr3 205001351 205001379 -13035779 + AT_rich Low_complexity Low_complexity 1 28 0 199 331 73 24 chr3 205001968 205002092 -13035066 + L2 LINE L2 2917 3046 -226 254 369 39 0 chr3 205002635 205002738 -13034420 + MIR SINE MIR 25 131 -131 1902 84 32 4 chr3 205002738 205002989 -13034169 - AluY SINE Alu -14 297 40 1756 243 87 40 chr3 205003009 205003539 -13033619 + MLT1G LTR MaLR 8 562 -28 1958 114 44 7 chr3 205003539 205003854 -13033304 - AluSx SINE Alu 0 325 1 288 241 99 78 chr3 205004003 205004144 -13033014 + MIR SINE MIR 89 232 -30 328 282 27 18 chr3 205004559 205004669 -13032489 - MIR SINE MIR -32 230 120 23 0 0 0 chr3 205004872 205004895 -13032263 + AT_rich Low_complexity Low_complexity 1 23 0 1467 228 69 78 chr3 205005097 205005453 -13031705 - Charlie7 DNA MER1_type -1818 794 443 2347 81 0 19 chr3 205005453 205005762 -13031396 - AluY SINE Alu -8 303 1 1467 228 69 78 chr3 205005762 205005957 -13031201 - Charlie7 DNA MER1_type -2169 443 248 839 254 54 12 chr3 205006103 205006343 -13030815 + L1MD2 LINE L1 6088 6337 -22 325 329 94 0 chr3 205006398 205006547 -13030611 + MIR3 SINE MIR 41 203 -5 414 256 39 16 chr3 205007267 205007396 -13029762 + L1MC/D LINE L1 5633 5764 -2044 1729 175 6 33 chr3 205007634 205007998 -13029160 + L1MC4 LINE L1 7595 8042 0 26 30 0 0 chr3 205008000 205008033 -13029125 + AT_rich Low_complexity Low_complexity 1 33 0 209 357 65 24 chr3 205008643 205008811 -13028347 + L2 LINE L2 2799 2973 -341 249 313 47 109 chr3 205009492 205009684 -13027474 + L2 LINE L2 3089 3268 -4 2115 142 0 0 chr3 205010048 205010344 -13026814 - AluSx SINE Alu -16 296 1 485 299 53 45 chr3 205010919 205011183 -13025975 + L3 LINE CR1 1189 1454 -123 359 321 51 95 chr3 205011211 205011485 -13025673 - L2 LINE L2 -15 3257 2996 1864 268 14 2 chr3 205012507 205012993 -13024165 + L1ME1 LINE L1 5669 6160 -6 190 275 50 100 chr3 205013140 205013340 -13023818 + L2 LINE L2 2888 3077 -195 1808 179 59 13 chr3 205013409 205013784 -13023374 - Charlie1b DNA MER1_type -131 392 1 7259 205 29 27 chr3 205013801 205014336 -13022822 - L1MC1 LINE L1 0 6333 5801 2258 115 0 3 chr3 205014336 205014640 -13022518 - AluSg SINE Alu -7 303 1 7259 205 29 27 chr3 205014640 205016577 -13020581 - L1MC1 LINE L1 -532 5801 3848 2408 92 3 0 chr3 205016577 205016881 -13020277 - AluSp SINE Alu -8 305 1 7259 205 29 27 chr3 205016881 205017209 -13019949 - L1MC1 LINE L1 -2485 3848 3522 1226 219 18 29 chr3 205017219 205017497 -13019661 - L1MD2 LINE L1 -22 6337 6063 1273 157 0 0 chr3 205018650 205018841 -13018317 - L1PA13 LINE L1 -4 6159 5969 463 252 115 0 chr3 205018980 205019119 -13018039 - MIR3 SINE MIR -13 195 41 356 324 23 29 chr3 205019445 205019618 -13017540 + MIR3 SINE MIR 1 172 -36 344 343 0 0 chr3 205019680 205019785 -13017373 - MIR SINE MIR -58 150 46 34952 38 35 2 chr3 205020374 205024638 -13012520 + L1P LINE L1 1 4406 -1740 463 275 20 27 chr3 205025054 205025203 -13011955 + MIR SINE MIR 20 167 -95 381 333 8 15 chr3 205025219 205025351 -13011807 - L2 LINE L2 -4 3309 3179 185 318 0 0 chr3 205025361 205025405 -13011753 + L2 LINE L2 3251 3294 -19 366 260 32 41 chr3 205026014 205026137 -13011021 - MIR3 SINE MIR -20 188 67 547 290 134 60 chr3 205026343 205026478 -13010680 + L3 LINE CR1 1240 1364 -213 881 196 31 6 chr3 205026478 205026641 -13010517 - FAM SINE Alu -8 167 1 547 290 134 60 chr3 205026641 205026819 -13010339 + L3 LINE CR1 1364 1576 -1 187 288 51 0 chr3 205027378 205027437 -13009721 + MIR SINE MIR 57 118 -144 310 286 70 9 chr3 205027738 205027859 -13009299 + MIR SINE MIR 33 165 -43 623 285 47 43 chr3 205027862 205028097 -13009061 + MIR SINE MIR 23 258 -4 837 121 7 71 chr3 205028155 205028295 -13008863 + FLAM_C SINE Alu 1 131 -12 575 289 31 21 chr3 205029246 205029440 -13007718 + MIR3 SINE MIR 7 202 -6 2240 122 3 0 chr3 205029543 205029854 -13007304 - AluSp SINE Alu 0 313 2 234 292 58 25 chr3 205030145 205030265 -13006893 + MIR SINE MIR 17 140 -68 409 235 200 0 chr3 205030284 205030399 -13006759 - MER5A DNA MER1_type 0 189 52 209 337 41 0 chr3 205031802 205031900 -13005258 + MIR SINE MIR 94 195 -67 423 0 0 0 chr3 205031950 205031997 -13005161 + (TG)n Simple_repeat Simple_repeat 2 48 0 242 260 138 51 chr3 205032250 205032446 -13004712 + L1ME4a LINE L1 5853 6065 -56 2424 77 0 7 chr3 205032653 205032963 -13004195 - AluY SINE Alu -3 308 1 217 357 41 20 chr3 205033267 205033365 -13003793 - L2 LINE L2 -26 3246 3147 488 293 12 30 chr3 205033421 205033585 -13003573 + MIR3 SINE MIR 36 196 -12 195 378 18 0 chr3 205033939 205034050 -13003108 + MIR3 SINE MIR 3 115 -93 * 218 338 0 28 chr3 205034046 205034117 -13003041 - L2 LINE L2 0 3272 3204 330 300 9 45 chr3 205034237 205034347 -13002811 + MIR3 SINE MIR 90 195 -13 817 245 0 0 chr3 205034996 205035159 -13001999 - MIR SINE MIR -98 164 2 207 204 0 0 chr3 205036514 205036558 -13000600 + (CATATA)n Simple_repeat Simple_repeat 3 46 0 442 228 65 41 chr3 205036617 205036740 -13000418 + L2 LINE L2 3188 3313 0 243 277 15 15 chr3 205037059 205037124 -13000034 + MIR SINE MIR 86 150 -58 262 300 56 118 chr3 205038493 205038763 -12998395 + L2 LINE L2 3020 3272 0 254 308 123 14 chr3 205038790 205038936 -12998222 - MIR SINE MIR -17 245 84 245 323 75 70 chr3 205040255 205040456 -12996702 + L2 LINE L2 3020 3221 -51 461 285 98 21 chr3 205040555 205040748 -12996410 - MIR SINE MIR -17 245 38 2073 205 48 2 chr3 205040750 205041164 -12995994 - MER63B DNA MER1_type -1 435 3 230 239 0 45 chr3 205041732 205041799 -12995359 + MIR3 SINE MIR 122 185 -23 348 307 11 0 chr3 205041815 205041903 -12995255 + MIR3 SINE MIR 96 184 -24 1828 160 10 0 chr3 205042665 205042958 -12994200 - AluJb SINE Alu -16 296 1 322 344 37 6 chr3 205043108 205043271 -12993887 - MIR3 SINE MIR -27 181 14 420 304 12 16 chr3 205043704 205043877 -12993281 + MIR3 SINE MIR 3 171 -37 311 374 85 44 chr3 205044798 205045068 -12992090 - L2 LINE L2 0 3272 2992 1713 158 13 10 chr3 205045113 205045416 -12991742 - L1PB1 LINE L1 -3 6148 5845 477 283 13 7 chr3 205045419 205045571 -12991587 + MIR SINE MIR 110 262 0 342 0 0 0 chr3 205045795 205045833 -12991325 + (CA)n Simple_repeat Simple_repeat 1 38 0 281 365 89 52 chr3 205046514 205046785 -12990373 - L2 LINE L2 0 3272 2992 1971 135 7 7 chr3 205046830 205047134 -12990024 - L1PB1 LINE L1 -3 6148 5845 509 263 13 7 chr3 205047137 205047289 -12989869 + MIR SINE MIR 110 262 0 252 0 0 0 chr3 205047513 205047541 -12989617 + (CA)n Simple_repeat Simple_repeat 1 28 0 480 196 168 56 chr3 205048286 205048429 -12988729 - MIR3 SINE MIR -20 188 30 1470 179 0 75 chr3 205048606 205048941 -12988217 + AluJo SINE Alu 1 310 -2 308 297 86 8 chr3 205049544 205049672 -12987486 + L3 LINE CR1 1331 1468 -109 380 216 118 65 chr3 205050290 205050409 -12986749 - MER103 DNA DNA -1 165 35 2397 79 0 10 chr3 205050409 205050714 -12986444 - AluSc SINE Alu -7 302 1 380 216 118 65 chr3 205050714 205050747 -12986411 - MER103 DNA DNA -131 35 5 229 333 54 11 chr3 205050840 205050933 -12986225 - MIR3 SINE MIR -4 204 108 235 270 70 113 chr3 205051063 205051248 -12985910 + MIR3 SINE MIR 11 175 -33 192 77 0 0 chr3 205051653 205051679 -12985479 + (GAA)n Simple_repeat Simple_repeat 2 27 0 266 192 0 0 chr3 205052814 205052866 -12984292 + MIR SINE MIR 102 153 -109 315 0 0 0 chr3 205053567 205053602 -12983556 + (A)n Simple_repeat Simple_repeat 1 35 0 322 358 46 7 chr3 205054611 205054762 -12982396 - MIR3 SINE MIR -11 197 41 21 0 0 0 chr3 205055947 205055968 -12981190 + AT_rich Low_complexity Low_complexity 1 21 0 209 245 0 61 chr3 205056291 205056340 -12980818 + L2 LINE L2 3182 3227 -86 243 267 67 0 chr3 205056948 205057008 -12980150 - MIR3 SINE MIR -24 184 121 278 322 136 84 chr3 205057108 205057499 -12979659 - L2 LINE L2 -4 3268 2858 280 210 32 0 chr3 205057712 205057774 -12979384 + L2 LINE L2 2683 2746 -568 394 329 18 18 chr3 205057804 205057974 -12979184 + L2 LINE L2 3107 3276 -37 429 296 78 0 chr3 205058308 205058450 -12978708 + MIR3 SINE MIR 49 201 -7 22 0 0 0 chr3 205058519 205058541 -12978617 + AT_rich Low_complexity Low_complexity 1 22 0 414 279 36 22 chr3 205058653 205058946 -12978212 - L1PA8A LINE L1 -303 5818 5548 356 303 51 41 chr3 205059494 205059689 -12977469 - L3 LINE CR1 -295 1282 1086 432 272 82 14 chr3 205060233 205060380 -12976778 + MIR3 SINE MIR 42 198 -10 249 109 0 0 chr3 205060881 205060927 -12976231 + (A)n Simple_repeat Simple_repeat 1 46 0 1478 200 35 14 chr3 205061425 205061710 -12975448 + AluJo SINE Alu 1 291 -21 673 256 6 0 chr3 205061806 205061962 -12975196 - MER5B DNA MER1_type -1 177 21 501 62 0 0 chr3 205061986 205062051 -12975107 + (CA)n Simple_repeat Simple_repeat 2 66 0 1650 99 0 0 chr3 205062116 205062327 -12974831 + AluSc SINE Alu 1 211 -98 254 292 53 44 chr3 205062349 205062462 -12974696 + MIR SINE MIR 2 115 -147 426 273 23 19 chr3 205063261 205063396 -12973762 - MIR3 SINE MIR 0 208 71 299 323 86 35 chr3 205063810 205064008 -12973150 - MIR SINE MIR -47 215 8 243 336 22 44 chr3 205064814 205064951 -12972207 - MIR3 SINE MIR -6 202 69 369 304 83 39 chr3 205064973 205065177 -12971981 - MIR SINE MIR -34 228 16 778 335 152 42 chr3 205065268 205066849 -12970309 - L2 LINE L2 -4 3268 1527 1118 239 28 44 chr3 205066957 205067321 -12969837 + MLT1A1 LTR MaLR 1 358 -7 438 264 52 45 chr3 205067329 205067484 -12969674 - MIR3 SINE MIR -49 159 4 46 19 0 0 chr3 205068111 205068164 -12968994 + AT_rich Low_complexity Low_complexity 1 53 0 586 284 62 5 chr3 205069750 205069944 -12967214 + MIR SINE MIR 2 206 -56 1316 201 43 17 chr3 205070211 205070659 -12966499 + MLT1D LTR MaLR 1 499 -6 301 211 68 83 chr3 205070909 205071042 -12966116 + MIR SINE MIR 81 211 -51 963 102 109 0 chr3 205071169 205071316 -12965842 - L1PA14 LINE L1 -2 6159 5997 337 209 58 0 chr3 205072067 205072153 -12965005 - MIR SINE MIR -111 151 61 349 218 179 0 chr3 205072396 205072534 -12964624 - MLT1G LTR MaLR 0 595 370 938 269 11 33 chr3 205072587 205072858 -12964300 - MLT1G LTR MaLR -286 304 40 22 0 0 0 chr3 205073808 205073830 -12963328 + AT_rich Low_complexity Low_complexity 1 22 0 498 262 48 48 chr3 205073884 205074071 -12963087 - MIR SINE MIR -70 192 6 354 219 9 105 chr3 205074087 205074192 -12962966 + MIR3 SINE MIR 87 181 -27 262 352 22 0 chr3 205074528 205074619 -12962539 + MIR SINE MIR 16 108 -100 210 118 0 0 chr3 205074882 205074916 -12962242 + (T)n Simple_repeat Simple_repeat 1 34 0 18112 26 1 0 chr3 205074932 205077691 -12959467 - L1PA2 LINE L1 -3 6152 3379 225 108 0 0 chr3 205077971 205078008 -12959150 + (TG)n Simple_repeat Simple_repeat 2 38 0 189 290 75 19 chr3 205078139 205078246 -12958912 - L2 LINE L2 -4 3309 3197 252 317 83 17 chr3 205078948 205079068 -12958090 + MIR SINE MIR 18 145 -63 264 59 0 0 chr3 205079628 205079662 -12957496 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1570 187 56 0 chr3 205079664 205079812 -12957346 - AluJo SINE Alu -30 282 144 492 62 0 0 chr3 205079812 205079876 -12957282 + (TA)n Simple_repeat Simple_repeat 2 65 0 1570 187 56 0 chr3 205079876 205079994 -12957164 - AluJo SINE Alu -168 144 1 421 255 87 46 chr3 205080103 205080299 -12956859 - MIR SINE MIR -50 212 9 193 192 39 77 chr3 205080314 205080366 -12956792 + L2 LINE L2 3223 3272 0 461 307 173 13 chr3 205080963 205081188 -12955970 + MIR SINE MIR 2 262 0 858 204 5 21 chr3 205083448 205083639 -12953519 + MER53 DNA DNA 1 188 -1 296 282 87 30 chr3 205085147 205085298 -12951860 - MIR SINE MIR -58 150 20 2346 100 3 7 chr3 205087131 205087440 -12949718 - AluSg SINE Alu -2 308 1 21 57 0 0 chr3 205088404 205088439 -12948719 + AT_rich Low_complexity Low_complexity 1 35 0 812 169 90 6 chr3 205088815 205088992 -12948166 - L1MA8 LINE L1 0 6291 6100 401 184 13 0 chr3 205088977 205089053 -12948105 + L1PA10 LINE L1 6027 6103 -65 * 874 164 85 0 chr3 205089622 205089799 -12947359 - L1MA8 LINE L1 0 6291 6100 926 115 0 0 chr3 205089799 205089914 -12947244 + L1PA10 LINE L1 6027 6156 -12 182 80 0 0 chr3 205089929 205089954 -12947204 + (TA)n Simple_repeat Simple_repeat 2 26 0 904 166 94 11 chr3 205089955 205090136 -12947022 - L1MA8 LINE L1 -178 6113 5918 376 288 135 6 chr3 205091317 205091487 -12945671 + MIR SINE MIR 10 201 -61 529 214 134 14 chr3 205091537 205091688 -12945470 - MIR3 SINE MIR -26 182 12 1026 199 10 0 chr3 205092356 205092562 -12944596 - MER3 DNA MER1_type -1 208 1 2743 289 153 26 chr3 205092925 205094703 -12942455 - L2 LINE L2 -272 3041 1042 264 329 0 13 chr3 205095537 205095616 -12941542 + MIR3 SINE MIR 79 156 -52 2013 131 7 7 chr3 205097050 205097340 -12939818 + AluSx SINE Alu 1 290 -22 202 280 40 50 chr3 205097520 205097620 -12939538 + L2 LINE L2 3136 3234 -38 511 238 46 20 chr3 205098641 205098792 -12938366 + MIR3 SINE MIR 36 190 -18 2151 117 0 7 chr3 205099264 205099564 -12937594 + AluSx SINE Alu 1 298 -14 294 347 33 20 chr3 205099676 205099826 -12937332 - MIR SINE MIR -106 156 5 183 234 0 0 chr3 205099941 205099988 -12937170 - MIR3 SINE MIR -6 202 156 1947 131 25 0 chr3 205100123 205100405 -12936753 + AluSx SINE Alu 1 289 -23 24 0 0 0 chr3 205100830 205100854 -12936304 + AT_rich Low_complexity Low_complexity 1 24 0 632 252 44 0 chr3 205101482 205101641 -12935517 + MER63A DNA MER1_type 10 175 -35 353 287 14 42 chr3 205101946 205102089 -12935069 + MIR SINE MIR 81 219 -43 194 254 60 15 chr3 205103086 205103153 -12934005 - L2 LINE L2 -3 3310 3241 497 324 131 35 chr3 205103367 205104030 -12933128 - L2 LINE L2 -348 2966 2240 207 0 0 0 chr3 205104492 205104515 -12932643 + (T)n Simple_repeat Simple_repeat 1 23 0 1981 125 21 0 chr3 205105121 205105410 -12931748 + AluSq SINE Alu 1 295 -18 328 196 21 82 chr3 205105492 205105589 -12931569 - MIR SINE MIR -73 189 99 317 190 38 25 chr3 205106015 205106094 -12931064 + MIR SINE MIR 73 152 -110 290 286 27 61 chr3 205106664 205106811 -12930347 - MIR3 SINE MIR 0 208 67 262 330 138 66 chr3 205106838 205107187 -12929971 - L2 LINE L2 -3 3269 2896 779 270 65 64 chr3 205108555 205109131 -12928027 + L1ME3A LINE L1 5304 5882 -288 1164 249 109 6 chr3 205109420 205109770 -12927388 - MLT1I LTR MaLR -7 402 17 417 280 60 28 chr3 205110157 205110339 -12926819 + MIR SINE MIR 25 212 -50 190 264 35 35 chr3 205110680 205110767 -12926391 - MIR3 SINE MIR -12 196 110 216 233 53 98 chr3 205111601 205111734 -12925424 - MIR SINE MIR -50 212 86 505 179 0 0 chr3 205112194 205112278 -12924880 + MER5A DNA MER1_type 26 109 -80 290 333 81 54 chr3 205112401 205112662 -12924496 + L2 LINE L2 2967 3234 -38 1202 131 6 6 chr3 205114453 205114628 -12922530 + AluSg/x SINE Alu 121 295 -17 328 309 54 7 chr3 205115171 205115320 -12921838 - MIR3 SINE MIR -3 205 50 2340 99 0 6 chr3 205115659 205115971 -12921187 + AluSg SINE Alu 1 310 0 1929 164 0 6 chr3 205116467 205116779 -12920379 + AluSg SINE Alu 1 310 0 537 30 0 0 chr3 205116961 205117028 -12920130 + (TG)n Simple_repeat Simple_repeat 2 68 0 291 130 0 0 chr3 205117462 205117516 -12919642 + (CA)n Simple_repeat Simple_repeat 2 55 0 216 0 0 0 chr3 205117736 205117760 -12919398 + (TA)n Simple_repeat Simple_repeat 2 25 0 2210 117 7 23 chr3 205117760 205118068 -12919090 - AluSp SINE Alu -10 303 1 190 269 222 19 chr3 205118592 205118700 -12918458 + L2 LINE L2 3140 3269 -3 269 216 95 0 chr3 205118776 205118850 -12918308 + MIR SINE MIR 81 161 -101 313 353 50 10 chr3 205119530 205119731 -12917427 + L2 LINE L2 2631 2839 -475 182 359 85 0 chr3 205119823 205119929 -12917229 + L2 LINE L2 2919 3033 -239 243 271 0 0 chr3 205120805 205120864 -12916294 + MIR SINE MIR 92 150 -112 219 36 0 0 chr3 205121424 205121452 -12915706 + (TG)n Simple_repeat Simple_repeat 2 29 0 217 329 24 59 chr3 205121500 205121585 -12915573 + MIR SINE MIR 20 101 -161 203 51 51 68 chr3 205121588 205121647 -12915511 + T-rich Low_complexity Low_complexity 6 63 0 1534 141 4 0 chr3 205121659 205121908 -12915250 - L1MA4 LINE L1 -11 6289 6040 210 274 110 20 chr3 205121912 205122058 -12915100 + MIR SINE MIR 93 251 -11 347 305 25 17 chr3 205122079 205122197 -12914961 + MIR3 SINE MIR 66 184 -24 27 0 0 0 chr3 205122737 205122764 -12914394 + AT_rich Low_complexity Low_complexity 1 27 0 356 62 0 74 chr3 205123291 205123372 -12913786 + (CTA)n Simple_repeat Simple_repeat 1 75 0 190 288 105 21 chr3 205123731 205123917 -12913241 + L2 LINE L2 2774 2972 -300 208 331 129 29 chr3 205125486 205125764 -12911394 - L2 LINE L2 0 3313 3008 337 302 95 78 chr3 205125837 205125958 -12911200 - L2 LINE L2 -453 2861 2743 2107 77 0 70 chr3 205125958 205126290 -12910868 - AluSc SINE Alu 0 311 1 337 302 95 78 chr3 205126290 205126409 -12910749 - L2 LINE L2 -571 2743 2616 184 288 153 0 chr3 205127606 205127665 -12909493 - L2 LINE L2 -32 3240 3173 219 282 39 29 chr3 205127817 205127920 -12909238 - L2 LINE L2 -236 3036 2933 259 258 90 69 chr3 205128064 205128249 -12908909 + MIR SINE MIR 19 202 -60 258 293 120 23 chr3 205129377 205129510 -12907648 + MIR3 SINE MIR 44 189 -19 326 339 71 0 chr3 205129591 205129718 -12907440 + MIR SINE MIR 115 250 -12 651 254 59 21 chr3 205130966 205131202 -12905956 + MIR SINE MIR 13 257 -5 22 0 0 0 chr3 205132011 205132033 -12905125 + AT_rich Low_complexity Low_complexity 1 22 0 236 192 0 0 chr3 205133520 205133572 -12903586 + T-rich Low_complexity Low_complexity 4 55 0 270 221 271 0 chr3 205134320 205134442 -12902716 + MIR SINE MIR 51 205 -57 386 289 195 11 chr3 205135505 205135695 -12901463 + MIR SINE MIR 34 258 -4 949 229 15 5 chr3 205135887 205136088 -12901070 - MER63A DNA MER1_type -1 209 7 2116 62 0 0 chr3 205137712 205137968 -12899190 + AluY SINE Alu 54 309 -2 384 191 117 0 chr3 205138732 205138826 -12898332 + MIR3 SINE MIR 55 159 -49 396 177 52 21 chr3 205138956 205139052 -12898106 + L1MC5 LINE L1 7837 7935 -26 335 314 54 24 chr3 205139077 205139356 -12897802 - L2 LINE L2 -214 3058 2773 268 326 22 11 chr3 205139945 205140034 -12897124 - MIR SINE MIR -71 191 102 30 45 0 0 chr3 205140136 205140180 -12896978 + AT_rich Low_complexity Low_complexity 1 44 0 1381 261 37 37 chr3 205140282 205140792 -12896366 - L2 LINE L2 0 3313 2804 1693 169 0 46 chr3 205141037 205141344 -12895814 - AluJb SINE Alu -7 305 13 2434 177 17 11 chr3 205142431 205142895 -12894263 - L1MD1 LINE L1 -1 6635 6169 4494 69 17 22 chr3 205142895 205143928 -12893230 - MER11A LTR ERVK -1 1265 1 192 40 0 0 chr3 205143932 205143957 -12893201 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2253 103 0 0 chr3 205143960 205144251 -12892907 - AluSx SINE Alu -21 291 1 1195 204 33 25 chr3 205144252 205144526 -12892632 - L1MD1 LINE L1 -456 6180 5905 * 1989 262 33 25 chr3 205144504 205144857 -12892301 - L1MD1 LINE L1 -855 5685 5336 180 0 0 0 chr3 205144857 205144877 -12892281 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 1989 262 33 25 chr3 205144877 205145253 -12891905 - L1MD1 LINE L1 -1204 5336 4950 511 222 10 0 chr3 205145272 205145371 -12891787 + MLT1D LTR MaLR 2 101 -404 922 145 36 12 chr3 205145380 205145546 -12891612 + MLT1D LTR MaLR 336 505 0 6987 207 48 55 chr3 205145549 205148939 -12888219 - L1MD1 LINE L1 -1602 4938 1581 189 0 0 0 chr3 205148943 205148964 -12888194 + (T)n Simple_repeat Simple_repeat 1 21 0 1870 278 95 4 chr3 205148984 205149488 -12887670 - L1MD1 LINE L1 -5582 958 409 658 265 6 0 chr3 205149501 205149663 -12887495 - L1M4 LINE L1 -3584 2562 2400 * 1800 238 19 0 chr3 205149659 205150021 -12887137 - L1MD1 LINE L1 -6157 383 15 252 372 8 0 chr3 205150522 205150651 -12886507 + L2 LINE L2 3179 3308 -5 365 344 132 0 chr3 205151579 205151791 -12885367 + MIR SINE MIR 20 259 -3 198 0 0 0 chr3 205152977 205152999 -12884159 + (TTA)n Simple_repeat Simple_repeat 3 24 0 2949 52 9 0 chr3 205152999 205153343 -12883815 - L1PA3 LINE L1 -18 6137 5791 2100 178 21 58 chr3 205153827 205154259 -12882899 + MLT1C LTR MaLR 1 416 -51 2204 119 0 3 chr3 205154486 205154798 -12882360 + AluSx SINE Alu 1 311 -1 397 298 64 30 chr3 205154970 205155194 -12881964 + MLT1J1 LTR MaLR 3 240 -169 2258 117 0 0 chr3 205155411 205155710 -12881448 + AluSx SINE Alu 1 299 -13 392 265 48 41 chr3 205155872 205156019 -12881139 - L3 LINE CR1 -125 1452 1305 31 0 0 0 chr3 205156193 205156224 -12880934 + AT_rich Low_complexity Low_complexity 1 31 0 1584 235 98 31 chr3 205156943 205157514 -12879644 + L1ME4a LINE L1 5485 6093 -28 218 337 20 30 chr3 205157829 205157930 -12879228 + MIR SINE MIR 23 122 -86 384 278 31 47 chr3 205158121 205158312 -12878846 - L1ME3A LINE L1 -15 6155 5968 255 196 18 0 chr3 205158368 205158424 -12878734 - L1ME3A LINE L1 -207 5963 5907 26 50 0 0 chr3 205160102 205160142 -12877016 + AT_rich Low_complexity Low_complexity 1 40 0 31 0 0 0 chr3 205160165 205160196 -12876962 + AT_rich Low_complexity Low_complexity 1 31 0 3042 219 67 42 chr3 205160256 205161214 -12875944 + L1ME1 LINE L1 4499 5515 -651 2245 109 0 3 chr3 205161214 205161516 -12875642 - AluSx SINE Alu -11 301 1 3042 219 67 42 chr3 205161516 205162153 -12875005 + L1ME1 LINE L1 5515 6135 -31 664 299 47 44 chr3 205162320 205162658 -12874500 - L1ME3A LINE L1 -303 5818 5480 229 191 0 0 chr3 205162727 205162769 -12874389 + L2 LINE L2 3204 3245 -27 2409 68 3 0 chr3 205162775 205163070 -12874088 + AluSp SINE Alu 3 298 -15 26 0 0 0 chr3 205163286 205163312 -12873846 + AT_rich Low_complexity Low_complexity 1 26 0 360 279 21 29 chr3 205163324 205163464 -12873694 - Charlie7 DNA MER1_type -2456 156 18 181 262 155 0 chr3 205164407 205164491 -12872667 + L2 LINE L2 2964 3060 -212 23 33 0 0 chr3 205164538 205164568 -12872590 + AT_rich Low_complexity Low_complexity 1 30 0 188 450 0 0 chr3 205164569 205164649 -12872509 + L2 LINE L2 3103 3182 -90 511 308 154 26 chr3 205164778 205165200 -12871958 - L2 LINE L2 -926 2388 1913 5444 208 53 41 chr3 205165444 205165531 -12871627 + L1MB8 LINE L1 3764 3848 -2330 2170 102 3 3 chr3 205165531 205165816 -12871342 + AluSq SINE Alu 1 285 -28 5444 208 53 41 chr3 205165816 205167362 -12869796 + L1MB8 LINE L1 3848 5429 -749 1967 186 61 13 chr3 205167362 205167738 -12869420 + MSTD LTR MaLR 1 394 -2 5444 208 53 41 chr3 205167738 205168492 -12868666 + L1MB8 LINE L1 5429 6172 -6 629 245 138 57 chr3 205169494 205169878 -12867280 + MLT1C LTR MaLR 9 423 -44 261 287 85 61 chr3 205170187 205170351 -12866807 + MIR SINE MIR 32 199 -63 610 265 87 19 chr3 205171314 205171690 -12865468 - LTR16A LTR ERVL -11 439 1 1199 308 49 24 chr3 205172544 205173038 -12864120 - L2 LINE L2 -1 3312 2807 23 0 0 0 chr3 205173128 205173151 -12864007 + AT_rich Low_complexity Low_complexity 1 23 0 503 183 25 25 chr3 205173235 205173355 -12863803 - MER113 DNA MER1_type? -401 120 1 599 259 143 19 chr3 205173683 205173899 -12863259 + MLT1J2 LTR MaLR 189 431 -19 299 281 198 36 chr3 205173945 205174137 -12863021 + L3 LINE CR1 1155 1377 -200 287 317 73 16 chr3 205174982 205175105 -12862053 - MIR SINE MIR -56 152 23 312 286 191 7 chr3 205175167 205175314 -12861844 + MIR3 SINE MIR 19 192 -16 504 395 46 6 chr3 205175338 205175839 -12861319 + L2 LINE L2 2454 2974 -340 552 242 25 43 chr3 205175858 205176019 -12861139 + MER97c DNA MER1_type? 22 179 -911 391 349 98 0 chr3 205176229 205176361 -12860797 + L2 LINE L2 3128 3272 0 377 361 24 6 chr3 205176777 205176946 -12860212 - MIR3 SINE MIR -10 198 27 2365 145 30 15 chr3 205177043 205177443 -12859715 - L1MB5 LINE L1 -3 6171 5766 423 294 14 71 chr3 205177624 205177782 -12859376 + MIR3 SINE MIR 1 143 -119 1824 214 8 6 chr3 205177782 205178146 -12859012 - MLT1A1 LTR MaLR 0 365 1 423 294 14 71 chr3 205178146 205178207 -12858951 + MIR3 SINE MIR 143 206 -56 339 272 143 26 chr3 205179321 205179670 -12857488 + L1ME4a LINE L1 5609 5998 -123 2198 135 3 0 chr3 205181244 205181555 -12855603 + AluSx SINE Alu 1 312 0 2234 117 7 0 chr3 205183030 205183408 -12853750 - AluSx SINE Alu 0 380 1 204 380 93 7 chr3 205183541 205183691 -12853467 + L3 LINE CR1 1407 1569 -8 2359 86 0 0 chr3 205183875 205184167 -12852991 - AluSg SINE Alu -14 296 5 272 285 136 9 chr3 205186735 205186848 -12850310 + MIR SINE MIR 30 154 -63 243 303 22 11 chr3 205187254 205187343 -12849815 + MIR3 SINE MIR 81 170 -38 443 269 8 22 chr3 205187348 205187404 -12849754 + MER94 DNA DNA 3 58 -76 2326 98 0 3 chr3 205187404 205187710 -12849448 + AluSc SINE Alu 1 305 -4 443 269 8 22 chr3 205187710 205187787 -12849371 + MER94 DNA DNA 58 134 0 1369 175 55 8 chr3 205188300 205188460 -12848698 + MER65A LTR ERV1 1 152 -293 384 22 0 0 chr3 205188460 205188505 -12848653 + (CA)n Simple_repeat Simple_repeat 2 46 0 1369 175 55 8 chr3 205188505 205188684 -12848474 + MER65A LTR ERV1 152 445 0 231 254 68 0 chr3 205188727 205188786 -12848372 - MIR SINE MIR -68 140 78 394 345 14 7 chr3 205189179 205189324 -12847834 + MIR3 SINE MIR 52 197 -11 1904 105 3 99 chr3 205189829 205190175 -12846983 - AluSp SINE Alu 0 316 1 186 301 97 86 chr3 205190294 205190416 -12846742 + MIR SINE MIR 29 155 -107 1607 129 0 0 chr3 205190416 205190641 -12846517 + AluSg/x SINE Alu 86 310 -2 186 301 97 86 chr3 205190641 205190704 -12846454 + MIR SINE MIR 155 216 -46 275 256 47 12 chr3 205191029 205191115 -12846043 + MIR SINE MIR 44 132 -76 689 267 53 5 chr3 205191446 205191633 -12845525 + Charlie8 DNA MER1_type 7 202 -2215 222 37 0 0 chr3 205191798 205191825 -12845333 + (TG)n Simple_repeat Simple_repeat 2 28 0 394 189 158 79 chr3 205192019 205192183 -12844975 + MER63A DNA MER1_type 31 207 -3 710 302 79 49 chr3 205192369 205192962 -12844196 + L2 LINE L2 2295 2905 -409 556 274 181 21 chr3 205193012 205193293 -12843865 + L2 LINE L2 2988 3313 0 365 244 61 35 chr3 205194021 205194136 -12843022 - MIR3 SINE MIR -23 185 68 1952 138 0 14 chr3 205194265 205194561 -12842597 - AluSg SINE Alu -18 292 1 485 282 18 31 chr3 205195301 205195464 -12841694 - MER5A DNA MER1_type 0 189 29 308 260 0 13 chr3 205195511 205195588 -12841570 + MIR3 SINE MIR 104 179 -29 244 175 0 0 chr3 205195700 205195740 -12841418 - MER4A LTR ERV1 0 664 625 1923 141 35 0 chr3 205195741 205196031 -12841127 - AluSx SINE Alu -11 301 2 1583 141 3 82 chr3 205196032 205196381 -12840777 - MER4A LTR ERV1 -23 641 261 501 151 65 11 chr3 205196381 205196474 -12840684 - MER4A LTR ERV1 -566 98 1 222 37 0 0 chr3 205196789 205196816 -12840342 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 305 349 89 25 chr3 205198144 205198379 -12838779 + MLT1K LTR MaLR 329 578 -10 267 313 80 0 chr3 205199271 205199383 -12837775 - MIR3 SINE MIR -2 206 86 277 227 23 121 chr3 205201415 205201463 -12835695 + MIR3 SINE MIR 89 140 -68 1956 155 13 0 chr3 205201463 205201766 -12835392 - AluSx SINE Alu -5 307 1 277 227 23 121 chr3 205201766 205201849 -12835309 + MIR3 SINE MIR 140 207 -1 665 316 82 4 chr3 205201942 205202211 -12834947 + MER115 DNA AcHobo 33 322 -371 2252 106 7 0 chr3 205203140 205203433 -12833725 + AluSx SINE Alu 1 295 -17 201 337 84 11 chr3 205203860 205203955 -12833203 - MIR SINE MIR -70 192 91 221 75 25 0 chr3 205204026 205204066 -12833092 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 217 312 65 0 chr3 205204895 205204988 -12832170 - MIR3 SINE MIR -2 206 108 207 328 141 8 chr3 205204988 205205116 -12832042 - L2 LINE L2 -1 3271 3127 195 261 0 0 chr3 205205194 205205240 -12831918 + MIR SINE MIR 79 124 -84 348 283 117 32 chr3 205206089 205206233 -12830925 - L1MC/D LINE L1 -361 5801 5671 2305 103 3 0 chr3 205206233 205206533 -12830625 - AluSq SINE Alu -12 301 1 348 283 117 32 chr3 205206533 205206733 -12830425 - L1MC/D LINE L1 -491 5671 5417 300 309 49 0 chr3 205206808 205206931 -12830227 + MIR SINE MIR 20 148 -114 1782 146 0 15 chr3 205207034 205207302 -12829856 + AluSq SINE Alu 1 264 -49 592 294 77 40 chr3 205207883 205208206 -12828952 + MLT1K LTR MaLR 91 425 -163 286 239 18 101 chr3 205208479 205208588 -12828570 + MIR3 SINE MIR 104 203 -5 271 289 54 47 chr3 205209096 205209123 -12828035 - MIR SINE MIR -32 230 205 2347 92 0 13 chr3 205209123 205209437 -12827721 - AluY SINE Alu -1 310 1 271 289 54 47 chr3 205209437 205209558 -12827600 - MIR SINE MIR -57 205 81 206 364 0 0 chr3 205210221 205210276 -12826882 + L2 LINE L2 3212 3266 -6 5916 187 25 12 chr3 205211363 205213297 -12823861 + L1MC2 LINE L1 4375 6335 -9 210 277 0 0 chr3 205213705 205213752 -12823406 + L2 LINE L2 3210 3256 -16 609 330 37 23 chr3 205214429 205214778 -12822380 + L3 LINE CR1 1149 1502 -75 223 230 60 60 chr3 205214938 205215038 -12822120 - MIR SINE MIR -55 207 108 270 252 117 68 chr3 205216466 205216671 -12820487 - MIR SINE MIR -2 260 48 303 316 0 0 chr3 205217119 205217198 -12819960 - L2 LINE L2 -6 3307 3229 285 250 62 12 chr3 205217341 205217421 -12819737 - MER45 DNA AcHobo -94 84 1 2038 139 23 0 chr3 205219049 205219352 -12817806 - AluSx SINE Alu -2 310 1 1795 148 0 21 chr3 205219833 205220123 -12817035 + AluJb SINE Alu 5 288 -24 2139 139 0 3 chr3 205220921 205221223 -12815935 + AluSx SINE Alu 1 301 -11 2394 92 0 7 chr3 205222887 205223190 -12813968 - AluSx SINE Alu -11 301 1 202 349 46 33 chr3 205223992 205224144 -12813014 + L2 LINE L2 2560 2713 -601 1470 261 25 25 chr3 205224158 205224561 -12812597 - MLT1I LTR MaLR -1 408 6 1907 137 0 11 chr3 205225583 205225895 -12811263 - AluJb SINE Alu 0 309 1 927 311 46 44 chr3 205226089 205226520 -12810638 + MER115 DNA AcHobo 25 456 -237 853 162 24 91 chr3 205226596 205226935 -12810223 - L1MA5 LINE L1 -354 5826 5575 2188 121 0 3 chr3 205226935 205227233 -12809925 - AluSx SINE Alu -15 297 1 853 162 24 91 chr3 205227233 205227453 -12809705 - L1MA5 LINE L1 -605 5575 5342 245 287 93 53 chr3 205228000 205228150 -12809008 - MIR3 SINE MIR -29 179 24 357 24 0 0 chr3 205228329 205228371 -12808787 + (TG)n Simple_repeat Simple_repeat 1 42 0 396 279 15 22 chr3 205228705 205228841 -12808317 + MIR3 SINE MIR 30 164 -44 306 308 36 29 chr3 205229851 205230033 -12807125 + MIR SINE MIR 17 193 -63 443 278 58 29 chr3 205230064 205230237 -12806921 + MIR SINE MIR 11 188 -74 367 312 122 54 chr3 205230866 205231235 -12805923 - MLT1J LTR MaLR -7 504 111 2369 49 42 0 chr3 205231354 205231641 -12805517 + AluYa5 SINE Alu 1 299 -12 227 367 33 33 chr3 205231779 205231899 -12805259 + L2 LINE L2 3117 3236 -36 1728 168 7 0 chr3 205232814 205233105 -12804053 + AluSx SINE Alu 14 306 -6 2155 126 0 0 chr3 205234283 205234577 -12802581 - AluSp SINE Alu -19 294 1 730 291 33 63 chr3 205234615 205234857 -12802301 + MLT1J LTR MaLR 120 348 -163 2130 98 29 0 chr3 205234857 205235154 -12802004 - AluSp SINE Alu 0 305 1 730 291 33 63 chr3 205235154 205235309 -12801849 + MLT1J LTR MaLR 348 506 -5 31 82 0 0 chr3 205235376 205235449 -12801709 + AT_rich Low_complexity Low_complexity 1 73 0 1741 198 155 18 chr3 205235646 205236022 -12801136 + MLT1D LTR MaLR 1 449 -56 2073 111 0 24 chr3 205236022 205236333 -12800825 - AluSq SINE Alu 0 304 1 1741 198 155 18 chr3 205236333 205236399 -12800759 + MLT1D LTR MaLR 449 505 0 1905 148 0 4 chr3 205236735 205237019 -12800139 + AluSx SINE Alu 1 283 -29 223 37 0 0 chr3 205237019 205237046 -12800112 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1998 225 7 13 chr3 205237264 205237713 -12799445 - L1MB5 LINE L1 -11 6163 5718 2350 115 0 0 chr3 205237711 205238023 -12799135 - AluSq SINE Alu -1 312 1 185 330 25 51 chr3 205238107 205238225 -12798933 + MER5A DNA MER1_type 17 131 -58 357 111 14 42 chr3 205240605 205240621 -12796537 + L1P LINE L1 5052 5067 -1079 7028 59 5 0 chr3 205240621 205241575 -12795583 - L1PA6 LINE L1 0 6154 5192 357 111 14 42 chr3 205241575 205241630 -12795528 + L1P LINE L1 5067 5121 -1025 244 250 48 73 chr3 205241993 205242117 -12795041 - L2 LINE L2 -43 3270 3150 2213 120 0 0 chr3 205242141 205242440 -12794718 + AluSx SINE Alu 1 299 -13 195 351 13 40 chr3 205242493 205242644 -12794514 - L2 LINE L2 -212 3060 2914 1993 124 0 11 chr3 205243199 205243509 -12793649 + AluSc SINE Alu 1 307 0 314 278 63 24 chr3 205243630 205243756 -12793402 + MIR SINE MIR 37 167 -95 2248 125 0 0 chr3 205244075 205244380 -12792778 + AluSq SINE Alu 4 308 -5 473 309 100 41 chr3 205244471 205244811 -12792347 + MLT1J LTR MaLR 3 362 -149 1651 226 41 47 chr3 205244874 205245360 -12791798 - MLT1D LTR MaLR 0 505 23 306 250 26 0 chr3 205245371 205245447 -12791711 + MLT1J LTR MaLR 428 505 -6 267 254 34 42 chr3 205245720 205245838 -12791320 - MIR3 SINE MIR -87 121 5 2329 104 0 7 chr3 205246639 205246938 -12790220 - AluSp SINE Alu -16 297 1 241 213 0 0 chr3 205246939 205246986 -12790172 - L3b LINE CR1 -240 1343 1297 214 312 26 13 chr3 205247180 205247257 -12789901 - MIR3 SINE MIR -15 193 116 333 301 98 7 chr3 205247608 205247761 -12789397 - MIR SINE MIR -8 254 88 2109 92 4 11 chr3 205248063 205248335 -12788823 - AluSq SINE Alu -43 270 1 319 341 59 63 chr3 205248609 205249069 -12788089 + L3 LINE CR1 1103 1560 -17 1835 153 0 17 chr3 205249072 205249390 -12787768 - AluJb SINE Alu 0 313 1 2400 92 0 3 chr3 205249401 205249707 -12787451 - AluSc SINE Alu -4 305 1 2130 112 37 0 chr3 205250088 205250384 -12786774 - AluSx SINE Alu -5 307 1 360 352 102 36 chr3 205251286 205251618 -12785540 + L2 LINE L2 2918 3271 -1 420 259 65 49 chr3 205251901 205252086 -12785072 - MIR3 SINE MIR -1 207 20 367 252 109 8 chr3 205252387 205252506 -12784652 - MIR SINE MIR -71 191 61 305 267 27 0 chr3 205253177 205253252 -12783906 + GA-rich Low_complexity Low_complexity 4 80 0 2075 130 7 7 chr3 205253846 205254154 -12783004 - AluSx SINE Alu -4 308 1 203 265 0 112 chr3 205254205 205254303 -12782855 + MIR3 SINE MIR 121 207 -1 350 360 69 22 chr3 205254655 205254930 -12782228 - L3 LINE CR1 -148 1429 1142 338 300 138 27 chr3 205255220 205255480 -12781678 - L3 LINE CR1 -553 1024 736 251 348 13 44 chr3 205255486 205255644 -12781514 - MER5B DNA MER1_type 0 178 26 210 94 189 0 chr3 205256088 205256141 -12781017 - MIR SINE MIR -64 144 82 220 335 81 43 chr3 205256215 205256376 -12780782 - L2 LINE L2 0 3272 3106 2002 117 7 4 chr3 205257436 205257709 -12779449 + AluSc SINE Alu 1 274 -35 1618 181 12 17 chr3 205257958 205258316 -12778842 - MER47B DNA MER2_type 0 418 13 2174 115 0 0 chr3 205258412 205258708 -12778450 + AluSx SINE Alu 13 308 -4 381 374 13 7 chr3 205258748 205258903 -12778255 + L3 LINE CR1 1377 1532 -45 192 333 25 0 chr3 205259459 205259540 -12777618 - MIR3 SINE MIR -52 156 74 219 302 31 31 chr3 205259929 205260025 -12777133 - MIR3 SINE MIR -21 187 92 2118 122 0 16 chr3 205260222 205260534 -12776624 + AluSx SINE Alu 1 307 -5 370 309 46 7 chr3 205260560 205260712 -12776446 + MIR SINE MIR 73 230 -32 185 366 15 8 chr3 205261238 205261372 -12775786 - L3 LINE CR1 -166 1411 1277 2208 112 10 13 chr3 205261740 205262086 -12775072 - AluSx SINE Alu 0 345 1 406 214 0 0 chr3 205262421 205262491 -12774667 - Tigger2 DNA MER2_type 0 2718 2649 2531 67 0 0 chr3 205262491 205262790 -12774368 - AluY SINE Alu -12 299 1 297 0 0 0 chr3 205262790 205262823 -12774335 + (TTA)n Simple_repeat Simple_repeat 1 33 0 648 157 17 9 chr3 205262823 205262938 -12774220 - FLAM_A SINE Alu -26 116 1 2084 165 44 3 chr3 205262939 205263303 -12773855 - Tigger2 DNA MER2_type -60 2658 2280 2319 99 3 0 chr3 205263326 205263629 -12773529 + AluSp SINE Alu 1 304 -9 246 226 38 0 chr3 205263629 205263682 -12773476 - Tigger2 DNA MER2_type -2663 55 1 2358 172 13 55 chr3 205263765 205263884 -12773274 - MSTB2 LTR MaLR 0 457 335 1582 174 60 14 chr3 205263884 205264165 -12772993 + AluJb SINE Alu 1 294 -18 2358 172 13 55 chr3 205264165 205264522 -12772636 - MSTB2 LTR MaLR -122 335 1 1393 259 107 39 chr3 205264761 205265255 -12771903 - MLT1H LTR MaLR 0 549 22 2329 101 19 0 chr3 205265370 205265677 -12771481 + AluSq SINE Alu 1 313 0 674 223 113 18 chr3 205266269 205266498 -12770660 - MIR SINE MIR 0 262 12 2916 127 9 0 chr3 205266677 205267109 -12770049 + L1PA13 LINE L1 5728 6163 0 808 143 186 0 chr3 205267143 205267283 -12769875 - AluSp SINE Alu -14 299 134 238 217 43 43 chr3 205268224 205268293 -12768865 - MIR3 SINE MIR -2 206 138 2197 99 33 0 chr3 205268789 205269091 -12768067 + AluSx SINE Alu 1 312 0 206 229 33 0 chr3 205269105 205269166 -12767992 - L2 LINE L2 -219 3053 2991 1857 95 34 86 chr3 205269880 205270207 -12766951 - AluSg SINE Alu 0 310 1 260 282 233 0 chr3 205270266 205270369 -12766789 - MER5A DNA MER1_type 0 189 63 2014 115 61 7 chr3 205270394 205270689 -12766469 - AluSq SINE Alu 0 313 3 407 187 0 0 chr3 205270690 205270765 -12766393 - MER5A DNA MER1_type -111 78 4 292 266 21 0 chr3 205271103 205271197 -12765961 - L1PBa LINE L1 -4632 2231 2136 289 153 29 197 chr3 205271638 205271775 -12765383 + LTR67 LTR ERVL 3 116 -441 1001 95 0 0 chr3 205271776 205271913 -12765245 - AluY SINE Alu -1 310 174 321 286 196 45 chr3 205271914 205272159 -12764999 + LTR67 LTR ERVL 104 385 -172 235 353 31 52 chr3 205272938 205273224 -12763934 + L2 LINE L2 2812 3091 -181 296 254 0 0 chr3 205273643 205273710 -12763448 + MER94 DNA DNA 1 67 -67 2256 99 3 0 chr3 205273726 205274056 -12763102 + AluSp SINE Alu 1 331 0 320 188 28 55 chr3 205274240 205274421 -12762737 + (CCGCG)n Simple_repeat Simple_repeat 5 180 0 429 130 5 54 chr3 205274441 205274626 -12762532 + (CCCCCG)n Simple_repeat Simple_repeat 2 177 0 446 69 0 28 chr3 205274684 205274756 -12762402 + (GGGAA)n Simple_repeat Simple_repeat 1 70 0 1111 59 5 38 chr3 205274762 205274948 -12762210 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 220 205 0 0 chr3 205274948 205274987 -12762171 + GA-rich Low_complexity Low_complexity 2 40 0 1527 240 74 42 chr3 205274987 205275773 -12761385 + L1MC4 LINE L1 7015 7918 -124 369 0 0 0 chr3 205275788 205275829 -12761329 + (TG)n Simple_repeat Simple_repeat 2 42 0 351 206 32 48 chr3 205275864 205275990 -12761168 + L1MC4 LINE L1 7919 8042 0 289 227 159 0 chr3 205276167 205276292 -12760866 - AluJb SINE Alu 0 339 201 1149 185 18 4 chr3 205276298 205276525 -12760633 - AluJo SINE Alu -66 246 17 270 0 0 0 chr3 205277160 205277190 -12759968 + (TA)n Simple_repeat Simple_repeat 1 30 0 348 231 182 16 chr3 205277620 205277741 -12759417 - MER5B DNA MER1_type -36 142 2 2314 101 17 0 chr3 205277841 205278137 -12759021 - AluSx SINE Alu -11 301 1 229 234 31 31 chr3 205278532 205278596 -12758562 - MIR SINE MIR -62 146 83 761 175 15 0 chr3 205279818 205279955 -12757203 + FLAM_C SINE Alu 2 140 -3 187 253 77 55 chr3 205280154 205280245 -12756913 - L2 LINE L2 -10 3262 3170 2031 118 7 7 chr3 205280265 205280545 -12756613 + AluSq SINE Alu 18 297 -16 254 254 34 42 chr3 205281346 205281464 -12755694 + MIR3 SINE MIR 5 121 -87 301 288 104 40 chr3 205282160 205282285 -12754873 + MIR3 SINE MIR 15 147 -61 440 78 43 35 chr3 205282330 205282445 -12754713 + GA-rich Low_complexity Low_complexity 1 116 0 273 252 98 32 chr3 205282611 205282734 -12754424 + L1ME4a LINE L1 5991 6121 0 181 279 0 0 chr3 205282995 205283038 -12754120 + L2 LINE L2 3206 3248 -24 1559 209 0 29 chr3 205283131 205283438 -12753720 - AluJo SINE Alu -14 298 1 207 69 0 0 chr3 205283681 205283710 -12753448 + (TG)n Simple_repeat Simple_repeat 2 30 0 809 191 0 0 chr3 205283775 205283906 -12753252 + FRAM SINE Alu 25 155 -21 965 104 15 0 chr3 205283980 205284114 -12753044 - AluSg/x SINE Alu -19 293 158 1492 101 0 10 chr3 205284114 205284313 -12752845 - AluSx SINE Alu -115 197 1 189 0 0 0 chr3 205284555 205284576 -12752582 + (TAA)n Simple_repeat Simple_repeat 1 21 0 2037 111 29 11 chr3 205284721 205285023 -12752135 + AluSx SINE Alu 1 307 0 225 195 110 24 chr3 205285056 205285138 -12752020 + L1ME4a LINE L1 6033 6121 0 2419 92 3 0 chr3 205287553 205287858 -12749300 - AluSq SINE Alu -7 306 1 207 221 42 63 chr3 205288250 205288345 -12748813 - MIR3 SINE MIR -113 95 3 2026 122 16 13 chr3 205288548 205288851 -12748307 + AluSx SINE Alu 2 305 -7 193 221 58 70 chr3 205288908 205288994 -12748164 - MIR3 SINE MIR -49 159 75 470 309 101 42 chr3 205290083 205290420 -12746738 + MLT1J LTR MaLR 6 362 -149 1631 223 42 49 chr3 205290497 205290969 -12746189 - MLT1D LTR MaLR -14 491 23 306 250 26 0 chr3 205290980 205291056 -12746102 + MLT1J LTR MaLR 428 505 -6 504 244 95 18 chr3 205292992 205293160 -12743998 + L2 LINE L2 3128 3308 -5 2196 100 4 0 chr3 205293442 205293754 -12743404 - AluSg SINE Alu 0 313 1 2219 95 3 0 chr3 205293754 205294038 -12743120 - AluSq SINE Alu -28 285 1 290 358 72 43 chr3 205294254 205294600 -12742558 - L2 LINE L2 -22 3250 2895 229 288 158 17 chr3 205294732 205294909 -12742249 - L2 LINE L2 -575 2739 2538 245 177 48 16 chr3 205295100 205295162 -12741996 - MIR SINE MIR -61 147 84 181 273 91 0 chr3 205296165 205296231 -12740927 + MIR SINE MIR 76 147 -115 368 221 0 0 chr3 205297007 205297075 -12740083 - MER94 DNA DNA -66 68 1 2204 107 0 29 chr3 205297204 205297512 -12739646 + AluSx SINE Alu 1 299 -13 1718 173 10 23 chr3 205298535 205298836 -12738322 + AluJo SINE Alu 1 297 -15 206 373 51 17 chr3 205299138 205299315 -12737843 - L2 LINE L2 -577 2737 2555 206 343 14 0 chr3 205299561 205299631 -12737527 + L3 LINE CR1 1404 1474 -103 216 182 0 0 chr3 205299702 205299746 -12737412 + T-rich Low_complexity Low_complexity 1 44 0 222 91 0 0 chr3 205300351 205300384 -12736774 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 429 318 34 20 chr3 205300546 205300750 -12736408 + MIR SINE MIR 16 217 -45 2004 129 0 11 chr3 205300760 205301040 -12736118 + AluSx SINE Alu 1 277 -35 360 0 0 0 chr3 205301046 205301086 -12736072 + (CAAAA)n Simple_repeat Simple_repeat 5 44 0 338 312 60 30 chr3 205301305 205301504 -12735654 - L1ME LINE L1 -515 5606 5402 233 279 93 12 chr3 205301658 205301744 -12735414 - L2 LINE L2 0 3313 3221 355 286 0 11 chr3 205301758 205301849 -12735309 - MIR3 SINE MIR -54 154 65 219 317 100 17 chr3 205302854 205302974 -12734184 - L2 LINE L2 -1 3271 3142 414 220 113 82 chr3 205303074 205303233 -12733925 + MER103 DNA DNA 2 165 -1 2268 122 0 6 chr3 205303864 205304175 -12732983 - AluSg SINE Alu -1 309 1 205 296 57 23 chr3 205305193 205305281 -12731877 + L2 LINE L2 3156 3246 -26 216 333 14 14 chr3 205305521 205305590 -12731568 + MIR SINE MIR 32 100 -108 345 225 147 0 chr3 205305737 205305866 -12731292 - MER104 DNA Tc2 -23 157 10 2035 112 3 14 chr3 205306025 205306310 -12730848 - AluSx SINE Alu -30 282 1 2250 106 0 3 chr3 205306819 205307130 -12730028 - AluSx SINE Alu -2 310 1 260 198 99 40 chr3 205308194 205308295 -12728863 + MIR3 SINE MIR 94 200 -8 323 103 0 17 chr3 205308629 205308687 -12728471 + (CGG)n Simple_repeat Simple_repeat 2 58 0 31 44 0 0 chr3 205308779 205308824 -12728334 + GC_rich Low_complexity Low_complexity 1 45 0 258 305 143 7 chr3 205309484 205309638 -12727520 - MIR3 SINE MIR 0 208 34 2103 102 10 7 chr3 205310649 205310942 -12726216 + AluSx SINE Alu 1 294 -18 322 281 0 22 chr3 205310942 205311031 -12726127 + L1MC4 LINE L1 6617 6703 -1339 318 249 0 9 chr3 205310961 205311075 -12726083 - L1MC4 LINE L1 -1339 6983 1995 * 321 264 44 63 chr3 205312109 205312268 -12724890 - MIR SINE MIR -34 228 73 2332 72 3 47 chr3 205312272 205312592 -12724566 - AluY SINE Alu -5 306 1 1594 151 4 0 chr3 205313153 205313391 -12723767 + AluSx SINE Alu 1 239 -73 192 316 71 0 chr3 205313404 205313502 -12723656 + L2 LINE L2 3170 3274 -39 272 135 0 0 chr3 205313513 205313575 -12723583 + AluSx SINE Alu 245 306 0 341 310 32 13 chr3 205313576 205313734 -12723424 + MIR3 SINE MIR 25 185 -23 2441 109 13 19 chr3 205313824 205314199 -12722959 + THE1C LTR MaLR 1 373 -2 312 27 0 0 chr3 205314320 205314357 -12722801 + (CA)n Simple_repeat Simple_repeat 1 37 0 245 299 82 27 chr3 205314576 205314723 -12722435 + L2 LINE L2 3159 3313 0 1112 146 0 0 chr3 205315283 205315454 -12721704 + AluSg/x SINE Alu 138 308 -4 205 175 18 105 chr3 205316061 205316118 -12721040 - L2 LINE L2 -52 3220 3169 876 84 28 22 chr3 205316576 205316755 -12720403 + (TA)n Simple_repeat Simple_repeat 1 180 0 2306 217 19 19 chr3 205316756 205317286 -12719872 - L1MB7 LINE L1 -11 6173 5644 254 225 139 64 chr3 205317860 205318047 -12719111 + L2 LINE L2 2332 2532 -782 978 175 0 0 chr3 205318083 205318237 -12718921 - AluSg/x SINE Alu -12 300 147 269 129 0 16 chr3 205318379 205318441 -12718717 + (TA)n Simple_repeat Simple_repeat 2 62 0 931 108 0 0 chr3 205318441 205318561 -12718597 - FLAM_C SINE Alu -10 133 14 251 294 20 13 chr3 205319417 205319538 -12717620 - MIR SINE MIR -98 164 44 401 225 0 45 chr3 205319918 205320029 -12717129 - MIR SINE MIR -65 197 92 2412 89 7 3 chr3 205320071 205320375 -12716783 - AluSx SINE Alu -7 305 1 519 284 44 0 chr3 205321570 205321753 -12715405 + MIR SINE MIR 71 261 -1 21 0 0 0 chr3 205321855 205321876 -12715282 + AT_rich Low_complexity Low_complexity 1 21 0 2140 129 0 3 chr3 205322016 205322325 -12714833 - AluSx SINE Alu 0 312 5 752 183 23 8 chr3 205322421 205322552 -12714606 - FLAM_A SINE Alu 0 133 1 318 291 35 47 chr3 205323757 205323929 -12713229 - MIR SINE MIR -34 228 59 418 171 73 41 chr3 205323976 205324099 -12713059 + MIR SINE MIR 66 192 -70 198 295 66 57 chr3 205324624 205324746 -12712412 + L3 LINE CR1 838 960 -617 1253 154 194 20 chr3 205324805 205325098 -12712060 - MER2 DNA MER2_type 0 344 1 304 262 99 28 chr3 205325150 205325291 -12711867 + L3 LINE CR1 1301 1451 -126 315 120 0 0 chr3 205326622 205326672 -12710486 - AluSp/q SINE Alu 0 303 254 2248 99 0 0 chr3 205326672 205326956 -12710202 - AluSq SINE Alu -29 284 1 22 35 0 0 chr3 205327829 205327858 -12709300 + AT_rich Low_complexity Low_complexity 1 29 0 269 263 145 26 chr3 205328119 205328271 -12708887 - MIR3 SINE MIR -19 189 20 208 287 129 10 chr3 205328287 205328388 -12708770 - MIR SINE MIR -59 149 37 214 259 0 0 chr3 205328450 205328504 -12708654 + T-rich Low_complexity Low_complexity 4 57 0 504 0 0 0 chr3 205328773 205328829 -12708329 + (CA)n Simple_repeat Simple_repeat 2 57 0 2430 93 0 13 chr3 205328946 205329258 -12707900 - AluSx SINE Alu -4 308 1 266 245 15 135 chr3 205329685 205329786 -12707372 - MIR SINE MIR -17 245 178 2189 137 24 41 chr3 205329786 205329853 -12707305 - L1MB2 LINE L1 -2 6169 6102 1893 183 0 0 chr3 205329853 205330153 -12707005 + AluSx SINE Alu 3 302 -10 2189 137 24 41 chr3 205330153 205330502 -12706656 - L1MB2 LINE L1 -69 6102 5760 266 245 15 135 chr3 205330502 205330600 -12706558 - MIR SINE MIR -84 178 70 2148 125 10 0 chr3 205331091 205331394 -12705764 - AluSx SINE Alu -2 310 5 238 287 46 0 chr3 205331396 205331483 -12705675 + MIR SINE MIR 61 151 -57 376 330 52 12 chr3 205331540 205331713 -12705445 - MIR SINE MIR -74 188 9 409 284 109 71 chr3 205331766 205332481 -12704677 - L2 LINE L2 0 3272 2508 388 188 0 0 chr3 205333465 205333534 -12703624 - L2 LINE L2 0 3272 3204 256 202 61 81 chr3 205333629 205333728 -12703430 - L1ME LINE L1 -406 5715 5619 314 276 60 45 chr3 205333983 205334117 -12703041 - MIR SINE MIR -79 183 48 212 351 30 8 chr3 205334609 205334740 -12702418 + L2 LINE L2 2899 3032 -240 223 276 184 0 chr3 205334880 205334967 -12702191 + MIR SINE MIR 49 151 -111 214 217 0 22 chr3 205335184 205335230 -12701928 + L2 LINE L2 3134 3178 -94 207 321 71 25 chr3 205335929 205336125 -12701033 + L2 LINE L2 2843 3047 -225 382 261 97 0 chr3 205336773 205336907 -12700251 + MIR SINE MIR 46 192 -70 23 68 0 0 chr3 205337019 205337063 -12700095 + AT_rich Low_complexity Low_complexity 1 44 0 2412 163 16 7 chr3 205337432 205337856 -12699302 - MSTA LTR MaLR 0 428 1 181 188 35 71 chr3 205338270 205338355 -12698803 - MIR3 SINE MIR -16 192 111 2249 107 0 0 chr3 205338947 205339236 -12697922 - AluSx SINE Alu -23 289 1 193 343 19 9 chr3 205339976 205340084 -12697074 + L3 LINE CR1 802 910 -667 29 0 0 0 chr3 205340084 205340113 -12697045 + AT_rich Low_complexity Low_complexity 1 29 0 1995 25 0 8 chr3 205340113 205340351 -12696807 - L1PA3 LINE L1 0 6155 5920 404 212 15 76 chr3 205340356 205340488 -12696670 + L3 LINE CR1 899 1022 -555 390 321 89 22 chr3 205340735 205340959 -12696199 - MLT1K LTR MaLR -340 248 10 732 187 0 15 chr3 205341550 205341684 -12695474 + FLAM_C SINE Alu 2 133 0 2053 124 0 0 chr3 205343137 205343410 -12693748 - AluSc SINE Alu -15 294 22 197 368 92 0 chr3 205343430 205343517 -12693641 - L2 LINE L2 -17 3255 3161 2304 81 37 0 chr3 205343549 205343844 -12693314 + AluSp SINE Alu 1 306 -7 1352 240 100 34 chr3 205343855 205344330 -12692828 - MLT1F1 LTR MaLR -67 500 1 1736 142 33 56 chr3 205345398 205345700 -12691458 - AluSx SINE Alu -17 295 1 421 266 108 14 chr3 205347368 205347507 -12689651 + MER117 DNA MER1_type 14 165 -32 186 138 0 0 chr3 205347594 205347623 -12689535 - MIR SINE MIR -99 109 81 11310 109 24 14 chr3 205347862 205349524 -12687634 - Tigger1 DNA MER2_type -738 1680 2 465 289 13 20 chr3 205350482 205350634 -12686524 - MIR3 SINE MIR -14 194 44 315 0 0 0 chr3 205350915 205350950 -12686208 + (TG)n Simple_repeat Simple_repeat 1 35 0 234 250 0 0 chr3 205350950 205351002 -12686156 + GA-rich Low_complexity Low_complexity 2 53 0 241 328 25 25 chr3 205351027 205351146 -12686012 - MIR3 SINE MIR -3 205 87 707 147 6 0 chr3 205352989 205353166 -12683992 + (TA)n Simple_repeat Simple_repeat 2 179 0 22 35 0 0 chr3 205353167 205353196 -12683962 + AT_rich Low_complexity Low_complexity 1 29 0 273 164 22 30 chr3 205353196 205353330 -12683828 + (TTATA)n Simple_repeat Simple_repeat 5 137 0 285 149 26 44 chr3 205353330 205353444 -12683714 + (TATAA)n Simple_repeat Simple_repeat 2 113 0 22 35 0 0 chr3 205353444 205353473 -12683685 + AT_rich Low_complexity Low_complexity 1 29 0 296 250 124 0 chr3 205353534 205353646 -12683512 + MIR SINE MIR 41 168 -61 442 233 46 35 chr3 205354638 205354772 -12682386 - MER20B DNA MER1_type -25 194 57 2154 130 0 0 chr3 205354784 205355077 -12682081 - AluSx SINE Alu -18 294 2 30 69 0 0 chr3 205355534 205355592 -12681566 + AT_rich Low_complexity Low_complexity 1 58 0 1729 95 0 0 chr3 205356036 205356257 -12680901 + AluSq SINE Alu 84 304 -9 2085 97 45 3 chr3 205356501 205356789 -12680369 + AluSq SINE Alu 1 300 -13 1242 260 165 18 chr3 205357082 205357620 -12679538 + MLT1G LTR MaLR 10 590 0 207 301 48 19 chr3 205357888 205357991 -12679167 + MIR SINE MIR 119 224 -38 773 256 66 4 chr3 205358195 205358422 -12678736 + MIR SINE MIR 1 241 -21 266 211 211 0 chr3 205358485 205358561 -12678597 - MIR SINE MIR -122 140 49 185 333 99 52 chr3 205359554 205359746 -12677412 - L2 LINE L2 -217 3055 2855 285 332 64 43 chr3 205359793 205360139 -12677019 - L2 LINE L2 -528 2786 2434 198 253 81 11 chr3 205360199 205360286 -12676872 - L2 LINE L2 -998 2316 2224 1256 165 68 18 chr3 205360644 205360923 -12676235 - MER33 DNA MER1_type -1 323 31 2381 94 7 3 chr3 205361219 205361526 -12675632 - AluSx SINE Alu -4 308 1 281 259 9 28 chr3 205362457 205362565 -12674593 - MIR SINE MIR -72 136 31 780 265 107 13 chr3 205362983 205363217 -12673941 - MIR SINE MIR -5 257 2 383 316 98 16 chr3 205363811 205364004 -12673154 + MIR SINE MIR 27 235 -27 25 0 0 0 chr3 205364006 205364031 -12673127 + AT_rich Low_complexity Low_complexity 1 25 0 204 317 142 8 chr3 205364191 205364311 -12672847 + L2 LINE L2 2914 3049 -223 2257 124 0 0 chr3 205365255 205365562 -12671596 - AluSg SINE Alu -3 307 1 476 234 65 19 chr3 205365859 205366013 -12671145 + L2 LINE L2 3115 3275 -38 184 304 59 0 chr3 205366040 205366142 -12671016 + MIR SINE MIR 34 141 -121 2284 97 0 7 chr3 205366152 205366451 -12670707 + AluSq SINE Alu 1 297 -16 306 250 26 0 chr3 205367644 205367720 -12669438 - MLT1J LTR MaLR -6 505 428 1651 226 41 47 chr3 205367731 205368217 -12668941 + MLT1D LTR MaLR 23 505 0 473 309 100 41 chr3 205368280 205368620 -12668538 - MLT1J LTR MaLR -149 362 3 2178 124 0 7 chr3 205368711 205369018 -12668140 - AluSq SINE Alu -5 308 4 314 278 63 24 chr3 205369337 205369463 -12667695 - MIR SINE MIR -95 167 37 1957 123 0 14 chr3 205369584 205369895 -12667263 - AluSc SINE Alu 0 307 1 214 312 26 13 chr3 205370503 205370580 -12666578 - MIR3 SINE MIR -15 193 116 333 301 98 7 chr3 205370931 205371084 -12666074 - MIR SINE MIR -8 254 88 2109 92 4 11 chr3 205371386 205371658 -12665500 - AluSq SINE Alu -43 270 1 319 341 59 63 chr3 205371932 205372392 -12664766 + L3 LINE CR1 1103 1560 -17 1655 161 0 33 chr3 205372395 205372718 -12664440 - AluJb SINE Alu 0 313 1 2354 92 3 3 chr3 205372729 205373034 -12664124 - AluSc SINE Alu -4 305 1 2060 111 37 7 chr3 205373415 205373713 -12663445 - AluSx SINE Alu -5 307 1 360 352 102 36 chr3 205374615 205374947 -12662211 + L2 LINE L2 2918 3271 -1 420 259 65 49 chr3 205375230 205375415 -12661743 - MIR3 SINE MIR -1 207 20 367 252 109 8 chr3 205375716 205375835 -12661323 - MIR SINE MIR -71 191 61 305 267 27 0 chr3 205376506 205376581 -12660577 + GA-rich Low_complexity Low_complexity 4 80 0 2032 115 11 0 chr3 205377201 205377480 -12659678 - AluSx SINE Alu -30 282 1 314 280 48 42 chr3 205377491 205377680 -12659478 - L1MC/D LINE L1 -2205 5603 5414 300 309 49 0 chr3 205377755 205377878 -12659280 + MIR SINE MIR 20 148 -114 2133 133 0 3 chr3 205377981 205378281 -12658877 + AluSx SINE Alu 1 299 -13 1718 173 10 23 chr3 205379304 205379605 -12657553 + AluJo SINE Alu 1 297 -15 206 373 51 17 chr3 205379907 205380084 -12657074 - L2 LINE L2 -577 2737 2555 206 343 14 0 chr3 205380330 205380400 -12656758 + L3 LINE CR1 1404 1474 -103 216 182 0 0 chr3 205380471 205380515 -12656643 + T-rich Low_complexity Low_complexity 1 44 0 222 91 0 0 chr3 205381120 205381153 -12656005 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 429 318 34 20 chr3 205381315 205381519 -12655639 + MIR SINE MIR 16 217 -45 2004 129 0 11 chr3 205381529 205381809 -12655349 + AluSx SINE Alu 1 277 -35 405 0 0 0 chr3 205381815 205381860 -12655298 + (CAAAA)n Simple_repeat Simple_repeat 5 49 0 338 312 60 30 chr3 205382079 205382278 -12654880 - L1ME LINE L1 -515 5606 5402 233 279 93 12 chr3 205382432 205382518 -12654640 - L2 LINE L2 0 3313 3221 355 286 0 11 chr3 205382532 205382623 -12654535 - MIR3 SINE MIR -54 154 65 196 330 73 18 chr3 205383641 205383750 -12653408 - L2 LINE L2 -16 3256 3142 414 220 113 82 chr3 205383850 205384009 -12653149 + MER103 DNA DNA 2 165 -1 2268 122 0 6 chr3 205384640 205384951 -12652207 - AluSg SINE Alu -1 309 1 823 260 87 0 chr3 205386582 205386813 -12650345 + MIR SINE MIR 12 262 0 1257 186 24 4 chr3 205386906 205387154 -12650004 - L1MD3 LINE L1 0 7995 7743 1797 164 0 14 chr3 205387205 205387498 -12649660 - AluJo SINE Alu -23 289 1 2227 113 7 10 chr3 205387548 205387858 -12649300 + AluSx SINE Alu 1 309 -3 233 135 39 39 chr3 205387867 205387919 -12649239 + Alu SINE Alu 250 301 0 203 338 40 0 chr3 205388042 205388116 -12649042 - MIR3 SINE MIR -32 176 100 222 207 86 0 chr3 205388363 205388421 -12648737 + L2 LINE L2 3196 3258 -14 1908 136 7 10 chr3 205389411 205389713 -12647445 - AluSx SINE Alu -7 305 5 21 0 0 0 chr3 205390171 205390192 -12646966 + AT_rich Low_complexity Low_complexity 1 21 0 182 209 23 0 chr3 205390408 205390449 -12646709 - MIR3 SINE MIR -15 193 152 468 252 129 7 chr3 205390449 205390588 -12646570 - MER5A DNA MER1_type -1 188 33 30 0 0 0 chr3 205390642 205390672 -12646486 + AT_rich Low_complexity Low_complexity 1 30 0 217 308 65 9 chr3 205390676 205390783 -12646375 - MIR SINE MIR -67 141 29 462 275 0 9 chr3 205391199 205391308 -12645850 + MIR SINE MIR 20 127 -81 240 229 0 0 chr3 205391952 205392000 -12645158 + MIR SINE MIR 114 161 -101 834 128 0 0 chr3 205393296 205393445 -12643713 + (GA)n Simple_repeat Simple_repeat 1 149 0 442 284 7 11 chr3 205395056 205395329 -12641829 - L1ME4a LINE L1 -210 5911 5600 2388 114 0 0 chr3 205395401 205395709 -12641449 + AluSg SINE Alu 1 308 -2 494 316 32 0 chr3 205395793 205395948 -12641210 - MER58C DNA MER1_type -4 211 52 40 0 0 0 chr3 205396016 205396056 -12641102 + AT_rich Low_complexity Low_complexity 1 40 0 981 163 0 7 chr3 205396062 205396215 -12640943 - FRAM SINE Alu -24 152 1 313 235 25 0 chr3 205396549 205396630 -12640528 + MER5A DNA MER1_type 9 91 -98 239 235 0 0 chr3 205396892 205396943 -12640215 - L2 LINE L2 -12 3260 3210 491 146 54 0 chr3 205397040 205397170 -12639988 + (TA)n Simple_repeat Simple_repeat 1 137 0 272 308 43 26 chr3 205397177 205397294 -12639864 + MER5B DNA MER1_type 60 178 0 286 255 71 0 chr3 205397295 205397393 -12639765 - MIR3 SINE MIR -49 159 55 224 318 37 19 chr3 205398296 205398403 -12638755 + L3 LINE CR1 1394 1502 -75 180 0 0 0 chr3 205399014 205399034 -12638124 + (T)n Simple_repeat Simple_repeat 1 20 0 280 280 42 63 chr3 205399451 205399594 -12637564 + MIR SINE MIR 10 149 -59 255 261 15 0 chr3 205400196 205400261 -12636897 + L2 LINE L2 3205 3270 -2 306 267 52 100 chr3 205400922 205401192 -12635966 - HAL1 LINE L1 0 2507 2251 242 253 91 84 chr3 205401314 205401468 -12635690 - HAL1b LINE L1 -428 920 766 227 296 45 0 chr3 205401552 205401640 -12635518 - HAL1 LINE L1 -343 2164 2073 364 262 28 35 chr3 205402285 205402430 -12634728 - L1ME LINE L1 -301 5820 5677 290 323 129 21 chr3 205402846 205403032 -12634126 + MARNA DNA Mariner 267 472 -114 1781 181 0 7 chr3 205403408 205403712 -12633446 - AluJb SINE Alu -10 302 1 274 267 26 69 chr3 205403839 205403955 -12633203 + MIR3 SINE MIR 98 208 0 2346 89 0 10 chr3 205404386 205404689 -12632469 - AluSx SINE Alu -12 300 1 184 304 59 0 chr3 205404699 205404801 -12632357 - MIR SINE MIR -121 141 34 474 264 52 13 chr3 205404828 205404983 -12632175 - L2 LINE L2 -38 3275 3115 2243 127 0 0 chr3 205405280 205405587 -12631571 + AluSg SINE Alu 1 307 -3 204 317 142 8 chr3 205406530 205406650 -12630508 - L2 LINE L2 -223 3049 2914 25 0 0 0 chr3 205406810 205406835 -12630323 + AT_rich Low_complexity Low_complexity 1 25 0 383 316 98 16 chr3 205406837 205407030 -12630128 - MIR SINE MIR -27 235 27 206 240 0 0 chr3 205407350 205407400 -12629758 + GA-rich Low_complexity Low_complexity 1 50 0 837 132 6 23 chr3 205407403 205407577 -12629581 + (GAAA)n Simple_repeat Simple_repeat 4 174 0 258 330 57 0 chr3 205407591 205407679 -12629479 - MIR SINE MIR -85 123 31 1956 83 0 80 chr3 205408147 205408436 -12628722 + AluSx SINE Alu 3 268 -44 2126 112 16 3 chr3 205408779 205409082 -12628076 - AluSx SINE Alu -5 307 1 425 137 0 81 chr3 205409248 205409372 -12627786 + AluSq/x SINE Alu 1 114 -189 201 195 0 0 chr3 205410070 205410111 -12627047 + CT-rich Low_complexity Low_complexity 1 41 0 1351 29 23 0 chr3 205410112 205410286 -12626872 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 315 221 27 128 chr3 205411165 205411229 -12625929 - MER94 DNA DNA 0 134 91 2255 99 3 0 chr3 205411229 205411551 -12625607 - AluSp SINE Alu 0 323 1 315 221 27 128 chr3 205411551 205411634 -12625524 - MER94 DNA DNA -43 91 1 235 353 31 52 chr3 205412054 205412340 -12624818 - L2 LINE L2 -181 3091 2812 321 286 196 45 chr3 205413119 205413364 -12623794 - LTR67 LTR ERVL -172 385 104 949 104 0 0 chr3 205413367 205413502 -12623656 + AluY SINE Alu 175 309 -2 289 153 29 197 chr3 205413503 205413640 -12623518 - LTR67 LTR ERVL -441 116 3 292 266 21 0 chr3 205414081 205414175 -12622983 + L1PBa LINE L1 2136 2231 -4632 407 187 0 0 chr3 205414513 205414588 -12622570 + MER5A DNA MER1_type 4 78 -111 2014 115 61 7 chr3 205414589 205414884 -12622274 + AluSq SINE Alu 3 313 0 260 282 233 0 chr3 205414909 205415012 -12622146 + MER5A DNA MER1_type 63 189 0 1857 95 34 86 chr3 205415071 205415398 -12621760 + AluSg SINE Alu 1 310 0 2095 105 33 13 chr3 205416184 205416489 -12620669 - AluSx SINE Alu -1 311 1 238 217 43 43 chr3 205416986 205417055 -12620103 + MIR3 SINE MIR 138 206 -2 709 116 215 0 chr3 205418000 205418143 -12619015 + AluSp SINE Alu 137 305 0 398 302 25 45 chr3 205418144 205418386 -12618772 - MLT1J LTR MaLR -152 359 123 2155 126 0 0 chr3 205418428 205418722 -12618436 + AluSp SINE Alu 1 294 -19 1728 168 7 0 chr3 205419900 205420191 -12616967 - AluSx SINE Alu -6 306 14 227 367 33 33 chr3 205421106 205421226 -12615932 - L2 LINE L2 -36 3236 3117 2329 56 42 0 chr3 205421364 205421651 -12615507 - AluYa5 SINE Alu -12 299 1 367 312 122 54 chr3 205421770 205422139 -12615019 + MLT1J LTR MaLR 111 504 -7 443 278 58 29 chr3 205422768 205422941 -12614217 - MIR SINE MIR -74 188 11 306 308 36 29 chr3 205422972 205423154 -12614004 - MIR SINE MIR -63 145 17 396 279 15 22 chr3 205424165 205424301 -12612857 - MIR3 SINE MIR -44 164 30 357 24 0 0 chr3 205424635 205424677 -12612481 + (CA)n Simple_repeat Simple_repeat 1 42 0 245 287 93 53 chr3 205424856 205425006 -12612152 + MIR3 SINE MIR 24 179 -29 853 162 24 91 chr3 205425556 205425776 -12611382 + L1MA5 LINE L1 5342 5575 -605 2188 121 0 3 chr3 205425776 205426074 -12611084 + AluSx SINE Alu 1 297 -15 853 162 24 91 chr3 205426074 205426413 -12610745 + L1MA5 LINE L1 5575 5826 -354 930 319 47 42 chr3 205426489 205426919 -12610239 - MER115 DNA AcHobo -237 456 25 1908 137 0 11 chr3 205427113 205427425 -12609733 + AluJb SINE Alu 1 309 0 1459 261 25 25 chr3 205428539 205428942 -12608216 + MLT1I LTR MaLR 6 408 -1 207 311 59 42 chr3 205428956 205429075 -12608083 - L2 LINE L2 -601 2713 2593 306 308 36 29 chr3 205429787 205429969 -12607189 + MIR SINE MIR 17 193 -63 443 278 58 29 chr3 205430000 205430173 -12606985 + MIR SINE MIR 11 188 -74 367 312 122 54 chr3 205430802 205431171 -12605987 - MLT1J LTR MaLR -7 504 111 2381 45 42 0 chr3 205431290 205431577 -12605581 + AluYa5 SINE Alu 1 299 -12 227 367 33 33 chr3 205431715 205431835 -12605323 + L2 LINE L2 3117 3236 -36 1690 181 0 3 chr3 205432750 205433038 -12604120 + AluSx SINE Alu 14 300 -12 1532 236 157 110 chr3 205433042 205433593 -12603565 + L1MC4a LINE L1 5318 5842 -1966 327 65 0 0 chr3 205433593 205433639 -12603519 + (TA)n Simple_repeat Simple_repeat 2 47 0 1532 236 157 110 chr3 205433639 205434721 -12602437 + L1MC4a LINE L1 5842 7027 -781 285 197 0 0 chr3 205434721 205434782 -12602376 + GA-rich Low_complexity Low_complexity 2 62 0 197 156 0 22 chr3 205434773 205434818 -12602340 + G-rich Low_complexity Low_complexity 3 46 0 * 285 75 0 0 chr3 205435273 205435313 -12601845 + (TG)n Simple_repeat Simple_repeat 2 41 0 206 306 0 0 chr3 205435516 205435565 -12601593 + polypyrimidine Low_complexity Low_complexity 3 51 0 304 167 39 10 chr3 205435877 205435979 -12601179 + GA-rich Low_complexity Low_complexity 1 105 0 207 0 0 0 chr3 205437420 205437443 -12599715 + (T)n Simple_repeat Simple_repeat 1 23 0 289 20 61 20 chr3 205437675 205437724 -12599434 + (CAAAAA)n Simple_repeat Simple_repeat 4 54 0 1789 133 194 0 chr3 205437733 205438063 -12599095 - MER57A LTR ERV1 -9 394 1 410 289 66 43 chr3 205438224 205438435 -12598723 - MIR SINE MIR -16 246 31 315 0 0 0 chr3 205439048 205439083 -12598075 + (TG)n Simple_repeat Simple_repeat 2 36 0 2111 90 11 0 chr3 205439083 205439350 -12597808 - AluSx SINE Alu -42 270 1 366 42 0 0 chr3 205439374 205439422 -12597736 + (TTTTC)n Simple_repeat Simple_repeat 3 50 0 598 225 0 73 chr3 205439425 205439603 -12597555 + L1ME2 LINE L1 5909 6073 -91 283 313 147 13 chr3 205440272 205440422 -12596736 + MIR3 SINE MIR 33 202 -6 276 100 0 0 chr3 205491436 205491476 -12545682 + (CA)n Simple_repeat Simple_repeat 2 41 0 226 299 65 19 chr3 205491563 205491717 -12545441 + L1P4 LINE L1 5290 5450 -715 254 261 76 34 chr3 205491829 205491948 -12545210 + L1ME LINE L1 5532 5655 -466 210 339 62 18 chr3 205493347 205493459 -12543699 - MIR SINE MIR -99 163 47 1114 184 0 28 chr3 205493704 205493916 -12543242 + AluJo SINE Alu 1 206 -106 23 0 0 0 chr3 205493948 205493971 -12543187 + AT_rich Low_complexity Low_complexity 1 23 0 180 204 74 37 chr3 205494301 205494355 -12542803 - L2 LINE L2 -1761 1553 1498 196 167 0 50 chr3 205494446 205494506 -12542652 + GA-rich Low_complexity Low_complexity 3 59 0 585 259 203 5 chr3 205494772 205494984 -12542174 + MIR SINE MIR 9 262 0 688 163 61 146 chr3 205496005 205496251 -12540907 + L1MB8 LINE L1 5800 6024 -154 556 188 87 7 chr3 205496303 205496441 -12540717 + L1MB8 LINE L1 6030 6178 0 265 247 129 11 chr3 205496749 205496842 -12540316 - MER91A DNA MER1_type -92 104 1 44862 41 1 1 chr3 205496956 205503109 -12534049 + L1PA4 LINE L1 1 6152 -3 30 77 0 0 chr3 205503485 205503550 -12533608 + AT_rich Low_complexity Low_complexity 1 65 0 2271 111 0 13 chr3 205503861 205504177 -12532981 + AluSx SINE Alu 1 312 0 234 0 0 0 chr3 205504177 205504203 -12532955 + (TA)n Simple_repeat Simple_repeat 2 27 0 242 306 47 47 chr3 205504411 205504496 -12532662 + L2 LINE L2 3141 3225 -47 225 337 126 0 chr3 205505463 205505558 -12531600 + MIR SINE MIR 52 158 -104 2134 130 0 0 chr3 205505595 205505895 -12531263 + AluSg1 SINE Alu 1 300 -9 254 299 79 37 chr3 205505933 205506097 -12531061 - MIR3 SINE MIR -5 203 33 304 247 90 11 chr3 205506122 205506211 -12530947 + MIR SINE MIR 167 262 0 319 252 22 108 chr3 205506265 205506452 -12530706 - MIR SINE MIR -50 212 43 261 0 0 0 chr3 205507071 205507100 -12530058 + (TC)n Simple_repeat Simple_repeat 2 30 0 * 414 53 0 0 chr3 205507099 205507156 -12530002 + (TG)n Simple_repeat Simple_repeat 2 58 0 457 324 34 0 chr3 205507242 205507390 -12529768 + MIR3 SINE MIR 31 183 -25 180 0 0 0 chr3 205508035 205508055 -12529103 + (TAAAAA)n Simple_repeat Simple_repeat 3 22 0 325 239 57 11 chr3 205509674 205509762 -12527396 + LTR33A LTR ERVL 431 522 -1 264 355 129 0 chr3 205509839 205510025 -12527133 - L2 LINE L2 -4 3268 3059 360 287 12 60 chr3 205510648 205510815 -12526343 + MIR SINE MIR 54 212 -50 204 125 0 0 chr3 205511408 205511440 -12525718 + (T)n Simple_repeat Simple_repeat 1 32 0 2271 116 0 0 chr3 205511454 205511755 -12525403 - AluSx SINE Alu -11 301 1 306 106 0 0 chr3 205512092 205512139 -12525019 + (CA)n Simple_repeat Simple_repeat 2 48 0 2404 85 3 0 chr3 205513229 205513536 -12523622 + AluSg SINE Alu 1 308 -2 261 163 0 0 chr3 205513686 205513735 -12523423 + (TG)n Simple_repeat Simple_repeat 2 50 0 194 319 124 26 chr3 205514958 205515071 -12522087 + MIR SINE MIR 32 155 -107 287 305 78 18 chr3 205515844 205516011 -12521147 + MIR3 SINE MIR 28 204 -4 201 241 0 19 chr3 205516433 205516487 -12520671 + GA-rich Low_complexity Low_complexity 6 58 0 192 313 0 0 chr3 205516945 205516993 -12520165 + L2 LINE L2 3210 3257 -15 338 305 177 7 chr3 205517138 205517279 -12519879 + MIR3 SINE MIR 44 208 0 184 353 47 0 chr3 205517955 205518040 -12519118 - MIR3 SINE MIR -37 171 83 184 337 45 22 chr3 205518663 205518752 -12518406 - MIR SINE MIR -108 154 64 24 0 0 0 chr3 205519329 205519353 -12517805 + AT_rich Low_complexity Low_complexity 1 24 0 222 368 0 15 chr3 205519466 205519534 -12517624 + MIR3 SINE MIR 9 75 -133 611 242 149 0 chr3 205519762 205519923 -12517235 - MER5A DNA MER1_type -1 188 4 2285 115 0 3 chr3 205520089 205520402 -12516756 + AluSq SINE Alu 1 312 -1 249 286 0 0 chr3 205520416 205520479 -12516679 - MIR SINE MIR -124 138 76 335 311 25 25 chr3 205520625 205520744 -12516414 + MIR3 SINE MIR 70 188 -20 343 302 43 35 chr3 205521374 205521490 -12515668 + MIR SINE MIR 25 141 -121 2341 92 3 16 chr3 205521973 205522289 -12514869 + AluSx SINE Alu 1 312 0 268 289 26 53 chr3 205524404 205524518 -12512640 + L2 LINE L2 2948 3058 -214 481 250 136 61 chr3 205524913 205525141 -12512017 - MIR SINE MIR -4 258 14 2298 99 0 3 chr3 205525192 205525496 -12511662 - AluSg SINE Alu -7 303 1 43 35 0 0 chr3 205526071 205526128 -12511030 + AT_rich Low_complexity Low_complexity 1 57 0 205 279 0 0 chr3 205527113 205527156 -12510002 + L2 LINE L2 3136 3178 -94 2035 117 0 4 chr3 205527253 205527527 -12509631 + AluSx SINE Alu 1 273 -39 399 41 0 0 chr3 205527544 205527593 -12509565 + (GGAGA)n Simple_repeat Simple_repeat 2 50 0 242 196 0 0 chr3 205527708 205527759 -12509399 + G-rich Low_complexity Low_complexity 1 51 0 466 154 27 34 chr3 205527759 205527908 -12509250 + GA-rich Low_complexity Low_complexity 1 148 0 194 169 124 135 chr3 205528451 205528540 -12508618 - MIR SINE MIR -121 141 54 921 165 0 0 chr3 205528670 205528803 -12508355 + FLAM_C SINE Alu 1 133 0 200 254 0 14 chr3 205528867 205528938 -12508220 + GA-rich Low_complexity Low_complexity 2 71 0 304 343 61 0 chr3 205529015 205529114 -12508044 + MER5A DNA MER1_type 20 124 -65 202 324 37 29 chr3 205529636 205529772 -12507386 + MIR SINE MIR 106 242 -20 259 301 117 107 chr3 205530713 205530919 -12506239 + L2 LINE L2 2946 3153 -119 853 246 64 21 chr3 205531017 205531253 -12505905 + MIR SINE MIR 1 246 -16 202 284 138 26 chr3 205531343 205531459 -12505699 - L2 LINE L2 -2 3311 3183 283 366 45 0 chr3 205533534 205533646 -12503512 - L2 LINE L2 -281 2991 2875 254 159 290 0 chr3 205533658 205533727 -12503431 - L2 LINE L2 0 3313 3225 241 264 64 45 chr3 205533832 205533942 -12503216 - L3 LINE CR1 -387 1190 1079 303 127 0 36 chr3 205535099 205535154 -12502004 - Alu SINE Alu -6 296 244 211 368 63 34 chr3 205535313 205535552 -12501606 + L2 LINE L2 2825 3070 -202 1781 180 12 9 chr3 205536221 205536555 -12500603 - L1MA9 LINE L1 -316 5996 5662 883 188 46 10 chr3 205536640 205536837 -12500321 - L1M3e LINE L1 -6825 205 2 2527 61 0 0 chr3 205537078 205537373 -12499785 - AluY SINE Alu -16 295 1 2247 117 0 0 chr3 205538119 205538417 -12498741 - AluSg SINE Alu -12 298 1 600 174 46 0 chr3 205539350 205539459 -12497699 - MER58B DNA MER1_type -2 339 226 874 186 61 98 chr3 205539671 205539935 -12497223 - AluJo SINE Alu -26 286 33 378 0 0 0 chr3 205541097 205541139 -12496019 + (CA)n Simple_repeat Simple_repeat 1 42 0 325 320 8 23 chr3 205541776 205541904 -12495254 + MIR3 SINE MIR 5 130 -78 526 274 55 7 chr3 205542342 205542488 -12494670 + L3 LINE CR1 1307 1459 -118 321 68 0 0 chr3 205542632 205542676 -12494482 + (TG)n Simple_repeat Simple_repeat 2 45 0 1444 167 17 60 chr3 205543313 205543612 -12493546 - AluJo SINE Alu -26 286 1 24 77 0 0 chr3 205543677 205543729 -12493429 + AT_rich Low_complexity Low_complexity 1 52 0 1301 194 88 15 chr3 205543731 205544031 -12493127 + AluJo SINE Alu 1 319 0 226 299 69 23 chr3 205544951 205545038 -12492120 - MIR3 SINE MIR -8 200 110 312 301 20 44 chr3 205545279 205545445 -12491713 + MIR SINE MIR 31 197 -11 2161 125 0 0 chr3 205545692 205545995 -12491163 - AluSx SINE Alu -9 303 1 382 274 89 73 chr3 205546302 205546481 -12490677 - MIR3 SINE MIR -7 201 20 273 326 116 20 chr3 205547132 205547279 -12489879 - MIR3 SINE MIR -3 205 45 560 326 85 4 chr3 205548345 205548581 -12488577 + MIR SINE MIR 7 261 -1 180 286 357 8 chr3 205549093 205549219 -12487939 - MIR3 SINE MIR -14 194 25 208 241 0 37 chr3 205549733 205549787 -12487371 - L2 LINE L2 0 3313 3262 254 293 78 16 chr3 205550336 205550527 -12486631 + L1M4 LINE L1 3685 3887 -2259 241 316 0 18 chr3 205550580 205550694 -12486464 + L1M4 LINE L1 3800 3911 -2235 335 345 11 40 chr3 205550906 205551083 -12486075 - L2 LINE L2 -183 3089 2918 226 208 0 0 chr3 205551470 205551523 -12485635 - L1MD3 LINE L1 -10 7985 7933 21 36 0 0 chr3 205551530 205551558 -12485600 + AT_rich Low_complexity Low_complexity 1 28 0 225 211 0 0 chr3 205551952 205552004 -12485154 + (TATATG)n Simple_repeat Simple_repeat 5 56 0 1843 176 3 0 chr3 205552331 205552626 -12484532 - AluJb SINE Alu -16 296 1 24 32 0 0 chr3 205553778 205553809 -12483349 + AT_rich Low_complexity Low_complexity 1 31 0 277 171 14 14 chr3 205553952 205554022 -12483136 + CT-rich Low_complexity Low_complexity 6 75 0 329 359 88 6 chr3 205554520 205554701 -12482457 - MIR3 SINE MIR -11 197 2 24 32 0 0 chr3 205555154 205555185 -12481973 + AT_rich Low_complexity Low_complexity 1 31 0 2229 98 16 0 chr3 205555872 205556177 -12480981 - AluSp SINE Alu -3 310 1 264 338 13 0 chr3 205556263 205556340 -12480818 + L2 LINE L2 3195 3272 0 1907 73 0 0 chr3 205556379 205556627 -12480531 - L1PA6 LINE L1 -1 6153 5906 6979 58 2 6 chr3 205558772 205559904 -12477254 + L1PA7 LINE L1 5029 6154 0 180 77 0 0 chr3 205559915 205559941 -12477217 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 249 214 157 14 chr3 205559961 205560031 -12477127 - L2 LINE L2 -37 3276 3197 205 214 18 71 chr3 205561334 205561390 -12475768 - L3b LINE CR1 -9 1574 1522 558 257 28 21 chr3 205561395 205561539 -12475619 - MER5B DNA MER1_type -32 146 2 2282 103 7 0 chr3 205561584 205561886 -12475272 + AluSg SINE Alu 1 304 -6 1075 119 38 6 chr3 205561886 205562045 -12475113 + AluSg/x SINE Alu 134 297 -15 207 318 45 34 chr3 205562046 205562134 -12475024 - MIR SINE MIR -104 104 16 268 350 100 6 chr3 205562447 205562627 -12474531 + MIR SINE MIR 40 236 -26 212 260 60 80 chr3 205563139 205563239 -12473919 - L3 LINE CR1 -218 1359 1262 245 207 0 35 chr3 205563541 205563599 -12473559 + CT-rich Low_complexity Low_complexity 1 56 0 449 261 49 49 chr3 205563686 205563870 -12473288 - MIR SINE MIR 0 262 79 560 326 85 4 chr3 205564065 205564301 -12472857 + MIR SINE MIR 7 261 -1 180 286 357 8 chr3 205564813 205564939 -12472219 - MIR3 SINE MIR -14 194 25 208 241 0 37 chr3 205565453 205565507 -12471651 - L2 LINE L2 0 3313 3262 254 293 78 16 chr3 205566056 205566247 -12470911 + L1M4 LINE L1 3685 3887 -2259 241 316 0 18 chr3 205566300 205566414 -12470744 + L1M4 LINE L1 3800 3911 -2235 335 345 11 40 chr3 205566626 205566803 -12470355 - L2 LINE L2 -183 3089 2918 226 208 0 0 chr3 205567190 205567243 -12469915 - L1MD3 LINE L1 -10 7985 7933 21 36 0 0 chr3 205567250 205567278 -12469880 + AT_rich Low_complexity Low_complexity 1 28 0 225 211 0 0 chr3 205567672 205567724 -12469434 + (TATATG)n Simple_repeat Simple_repeat 5 56 0 1843 176 3 0 chr3 205568051 205568346 -12468812 - AluJb SINE Alu -16 296 1 24 32 0 0 chr3 205569490 205569521 -12467637 + AT_rich Low_complexity Low_complexity 1 31 0 277 171 14 14 chr3 205569664 205569734 -12467424 + CT-rich Low_complexity Low_complexity 6 75 0 329 359 88 6 chr3 205570232 205570413 -12466745 - MIR3 SINE MIR -11 197 2 24 32 0 0 chr3 205570865 205570896 -12466262 + AT_rich Low_complexity Low_complexity 1 31 0 2221 111 10 0 chr3 205571584 205571891 -12465267 - AluSp SINE Alu -3 310 1 249 337 122 23 chr3 205573596 205573771 -12463387 - MIR3 SINE MIR -15 193 3 369 299 61 34 chr3 205573851 205573998 -12463160 + L2 LINE L2 3122 3272 0 2776 83 40 0 chr3 205574551 205574946 -12462212 - L1PB2 LINE L1 0 6151 5741 2146 97 50 0 chr3 205574946 205575288 -12461870 + L1PB2 LINE L1 5357 5715 -436 299 111 0 0 chr3 205575708 205575753 -12461405 + MADE1 DNA Mariner 36 80 0 360 43 0 0 chr3 205575756 205575802 -12461356 + (TC)n Simple_repeat Simple_repeat 2 47 0 180 152 0 0 chr3 205576003 205576036 -12461122 + CT-rich Low_complexity Low_complexity 2 34 0 222 360 40 24 chr3 205577627 205577752 -12459406 + MIR SINE MIR 86 212 -50 353 339 0 8 chr3 205577797 205577915 -12459243 - L2 LINE L2 -4 3309 3193 212 179 0 0 chr3 205577919 205577958 -12459200 + (TAA)n Simple_repeat Simple_repeat 3 41 0 23 105 0 0 chr3 205577964 205578050 -12459108 + AT_rich Low_complexity Low_complexity 1 86 0 1030 235 22 0 chr3 205578050 205578280 -12458878 + MER46A DNA MER2_type 2 236 0 252 370 0 12 chr3 205578397 205578478 -12458680 - MIR3 SINE MIR -9 199 120 2554 236 63 37 chr3 205578983 205579908 -12457250 + L1MD2 LINE L1 5376 6329 -30 323 195 56 191 chr3 205580069 205580284 -12456874 + MER5A DNA MER1_type 3 188 -1 323 266 14 50 chr3 205581125 205581264 -12455894 - L2 LINE L2 -213 3059 2926 259 272 34 16 chr3 205582269 205582360 -12454798 - MIR3 SINE MIR -115 93 5 246 293 79 71 chr3 205583273 205583413 -12453745 + MIR SINE MIR 13 153 -109 1949 135 30 0 chr3 205583419 205583715 -12453443 + AluSx SINE Alu 6 310 -2 29 47 0 0 chr3 205583881 205583924 -12453234 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr3 205584222 205584250 -12452908 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr3 205584693 205584722 -12452436 + AT_rich Low_complexity Low_complexity 1 29 0 256 339 58 16 chr3 205584832 205584953 -12452205 - MIR SINE MIR -117 145 20 405 0 0 0 chr3 205586717 205586762 -12450396 + (TG)n Simple_repeat Simple_repeat 2 46 0 23947 93 5 19 chr3 205586766 205591392 -12445766 - L1PA7 LINE L1 -13 6456 1892 5457 102 1 0 chr3 205591389 205592171 -12444987 - L1PA7 LINE L1 -5668 793 11 * 437 236 18 36 chr3 205592271 205592381 -12444777 - MER5B DNA MER1_type -1 177 70 30 0 0 0 chr3 205592384 205592414 -12444744 + AT_rich Low_complexity Low_complexity 1 30 0 269 319 114 6 chr3 205592441 205592607 -12444551 - L3 LINE CR1 -47 1530 1347 307 319 68 39 chr3 205593330 205593537 -12443621 - L3 LINE CR1 -167 1410 1198 283 305 21 0 chr3 205595505 205595600 -12441558 + MIR3 SINE MIR 112 208 0 417 335 37 12 chr3 205595891 205596052 -12441106 - MIR SINE MIR -78 184 20 262 306 24 35 chr3 205596701 205596786 -12440372 - L2 LINE L2 0 3272 3189 641 166 26 21 chr3 205597371 205597615 -12439543 + GA-rich Low_complexity Low_complexity 1 245 0 183 339 17 0 chr3 205598582 205598641 -12438517 + MIR3 SINE MIR 140 199 -9 * 190 357 14 0 chr3 205598626 205598696 -12438462 - MIR3 SINE MIR -6 202 132 227 293 103 52 chr3 205600130 205600246 -12436912 - MIR SINE MIR -64 144 23 598 222 117 18 chr3 205602137 205602162 -12434996 - MIR SINE MIR -44 218 197 423 0 0 0 chr3 205602162 205602209 -12434949 + (CA)n Simple_repeat Simple_repeat 2 48 0 598 222 117 18 chr3 205602209 205602354 -12434804 - MIR SINE MIR -65 197 31 187 250 0 0 chr3 205602653 205602689 -12434469 + L2 LINE L2 3227 3262 -10 246 326 124 0 chr3 205603512 205603601 -12433557 - L2 LINE L2 -24 3248 3149 213 260 40 0 chr3 205603984 205604034 -12433124 + L2 LINE L2 3214 3265 -7 * 500 283 38 27 chr3 205604032 205604216 -12432942 + MIR SINE MIR 75 260 -2 180 0 0 0 chr3 205604759 205604779 -12432379 + (TG)n Simple_repeat Simple_repeat 1 20 0 236 314 8 42 chr3 205605158 205605276 -12431882 - L1ME LINE L1 -617 5549 5436 421 330 46 82 chr3 205605517 205605929 -12431229 - L2 LINE L2 -1 3271 2875 262 159 290 0 chr3 205605941 205606010 -12431148 - L2 LINE L2 0 3313 3225 238 264 64 45 chr3 205606115 205606225 -12430933 - L3 LINE CR1 -387 1190 1079 332 111 0 19 chr3 205607373 205607427 -12429731 - Alu SINE Alu -6 296 244 250 369 58 35 chr3 205607586 205607846 -12429312 + L2 LINE L2 2825 3090 -182 200 319 87 51 chr3 205607856 205607994 -12429164 - MIR SINE MIR -100 162 20 838 318 29 0 chr3 205608075 205608320 -12428838 - MIR SINE MIR -10 252 1 2266 107 20 6 chr3 205608624 205608970 -12428188 - THE1A LTR MaLR 0 355 5 1403 206 41 0 chr3 205609958 205610249 -12426909 - AluJo SINE Alu -9 303 1 1995 105 0 59 chr3 205611677 205611981 -12425177 + AluSg SINE Alu 1 286 -24 542 225 28 73 chr3 205612563 205612781 -12424377 - L1MC5 LINE L1 -46 7915 7708 198 103 0 0 chr3 205612923 205612952 -12424206 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 635 289 208 27 chr3 205614910 205615357 -12421801 + L3 LINE CR1 1041 1568 -9 21 0 0 0 chr3 205615388 205615409 -12421749 + AT_rich Low_complexity Low_complexity 1 21 0 543 239 97 47 chr3 205615497 205615767 -12421391 - L1ME3A LINE L1 -1 6169 5872 319 261 93 31 chr3 205615959 205616120 -12421038 - L1ME3A LINE L1 -440 5681 5511 189 0 0 0 chr3 205616297 205616318 -12420840 + (TTA)n Simple_repeat Simple_repeat 2 22 0 224 364 0 0 chr3 205616318 205616406 -12420752 - MIR SINE MIR -118 144 57 23 0 0 0 chr3 205616461 205616484 -12420674 + AT_rich Low_complexity Low_complexity 1 23 0 369 0 0 0 chr3 205616611 205616652 -12420506 + (TA)n Simple_repeat Simple_repeat 1 41 0 423 0 0 0 chr3 205616655 205616702 -12420456 + (TG)n Simple_repeat Simple_repeat 2 48 0 1976 130 13 0 chr3 205616891 205617190 -12419968 + AluSx SINE Alu 1 303 -9 1062 187 41 90 chr3 205617270 205617538 -12419620 - AluJo SINE Alu -25 287 33 620 186 91 91 chr3 205618348 205618547 -12418611 - MER3 DNA MER1_type -7 202 4 21 0 0 0 chr3 205619217 205619238 -12417920 + AT_rich Low_complexity Low_complexity 1 21 0 229 71 119 24 chr3 205620185 205620227 -12416931 - MER51C LTR ERV1 -179 461 416 320 309 57 51 chr3 205620692 205620867 -12416291 - L3 LINE CR1 -1 1576 1401 306 0 0 0 chr3 205621081 205621115 -12416043 + (TA)n Simple_repeat Simple_repeat 2 35 0 229 349 47 0 chr3 205621314 205621400 -12415758 + MIR SINE MIR 82 171 -91 25 31 0 0 chr3 205621552 205621584 -12415574 + AT_rich Low_complexity Low_complexity 1 32 0 1715 222 27 43 chr3 205621741 205622254 -12414904 + MLT1D LTR MaLR 1 505 0 182 361 69 0 chr3 205622265 205622337 -12414821 + L2 LINE L2 3115 3191 -81 1053 210 19 5 chr3 205622540 205622754 -12414404 - MER58A DNA MER1_type -3 221 5 328 122 0 0 chr3 205624186 205624235 -12412923 - U5 snRNA snRNA -67 49 1 220 275 77 33 chr3 205624286 205624377 -12412781 - MIR SINE MIR -98 164 70 446 75 15 0 chr3 205624542 205624609 -12412549 + (CA)n Simple_repeat Simple_repeat 1 68 0 229 312 65 21 chr3 205624748 205624841 -12412317 - L2 LINE L2 -35 3237 3141 994 177 10 5 chr3 205625366 205625558 -12411600 - L1M4 LINE L1 -1281 4865 4673 1059 258 19 23 chr3 205627398 205627708 -12409450 - L1MC4a LINE L1 0 7808 7500 343 322 29 23 chr3 205627716 205627890 -12409268 - MER5B DNA MER1_type 0 178 4 195 302 177 0 chr3 205628459 205628555 -12408603 - L2 LINE L2 -20 3252 3140 2405 62 0 3 chr3 205629884 205630190 -12406968 + AluY SINE Alu 1 305 -6 618 317 40 60 chr3 205630210 205630560 -12406598 + L2 LINE L2 2964 3306 -7 371 281 104 34 chr3 205630561 205630901 -12406257 - L1MC/D LINE L1 -344 5777 5463 281 265 111 87 chr3 205632544 205632797 -12404361 - MER112 DNA MER1_type -1 259 1 203 339 115 8 chr3 205632797 205632927 -12404231 - MIR SINE MIR -64 198 55 2091 117 7 0 chr3 205633007 205633314 -12403844 - AluSg1 SINE Alu 0 309 1 306 200 46 0 chr3 205633620 205633685 -12403473 + MER5A DNA MER1_type 38 105 -84 229 368 93 16 chr3 205635282 205635540 -12401618 - L3b LINE CR1 -203 1380 1103 232 233 33 17 chr3 205635984 205636044 -12401114 + MER5A DNA MER1_type 3 63 -126 193 316 0 0 chr3 205636038 205636095 -12401063 + MIR3 SINE MIR 149 205 -3 * 1842 149 136 16 chr3 205636181 205636563 -12400595 + MSTA LTR MaLR 1 428 0 469 262 21 102 chr3 205636767 205636954 -12400204 - MER5B DNA MER1_type -6 172 1 718 250 16 5 chr3 205637118 205637302 -12399856 + MER5A DNA MER1_type 1 186 -3 430 198 75 103 chr3 205639666 205639779 -12397379 + L1MC5 LINE L1 7651 7766 -195 2721 13 0 0 chr3 205639779 205640078 -12397080 + AluYa5 SINE Alu 1 299 -12 430 198 75 103 chr3 205640078 205640216 -12396942 + L1MC5 LINE L1 7766 7895 -66 418 99 28 0 chr3 205640307 205640378 -12396780 - L1MA3 LINE L1 -1 6304 6232 405 322 135 32 chr3 205640535 205640883 -12396275 - L2 LINE L2 0 3313 2930 301 194 0 32 chr3 205642169 205642231 -12394927 - MIR3 SINE MIR -2 206 147 2186 92 0 7 chr3 205642886 205643200 -12393958 - AluSg SINE Alu 0 312 1 232 125 0 0 chr3 205644660 205644700 -12392458 - AluSx SINE Alu -2 300 261 1453 138 0 13 chr3 205644702 205644927 -12392231 - AluSx SINE Alu -90 222 1 2396 75 3 23 chr3 205645015 205645323 -12391835 - AluY SINE Alu -9 302 1 324 102 0 0 chr3 205645811 205645860 -12391298 + (CAG)n Simple_repeat Simple_repeat 1 49 0 2050 144 0 3 chr3 205646676 205646981 -12390177 + AluSq SINE Alu 1 304 -9 455 289 52 74 chr3 205647287 205647654 -12389504 - HAL1b LINE L1 -681 667 309 257 128 21 0 chr3 205647723 205647770 -12389388 + T-rich Low_complexity Low_complexity 3 50 0 1266 158 0 68 chr3 205647774 205648008 -12389150 - AluJo SINE Alu -94 218 1 415 284 142 11 chr3 205648990 205649173 -12387985 + MIR SINE MIR 1 207 -55 524 108 47 0 chr3 205649353 205649501 -12387657 + (TA)n Simple_repeat Simple_repeat 2 156 0 207 297 16 0 chr3 205649531 205649595 -12387563 + MIR3 SINE MIR 128 192 -16 2150 102 0 20 chr3 205650419 205650714 -12386444 - AluSg SINE Alu -20 290 2 8793 236 69 19 chr3 205652466 205655621 -12381537 - L1MB3 LINE L1 -7 6412 3018 2132 103 7 23 chr3 205655621 205655756 -12381402 + AluSg SINE Alu 1 137 -173 2344 64 34 0 chr3 205655756 205656054 -12381104 + AluY SINE Alu 1 308 -3 2132 103 7 23 chr3 205656054 205656218 -12380940 + AluSg SINE Alu 137 295 -15 8793 236 69 19 chr3 205656218 205656922 -12380236 - L1MB3 LINE L1 -3401 3018 2351 1763 204 23 3 chr3 205656932 205657276 -12379882 - MER47A DNA MER2_type 0 366 16 10615 188 48 13 chr3 205657302 205659547 -12377611 - L1MB3 LINE L1 -4044 2340 17 352 284 102 34 chr3 205660822 205660998 -12376160 - MIR3 SINE MIR -1 207 20 2518 78 0 0 chr3 205661076 205661385 -12375773 - AluY SINE Alu -2 309 1 320 320 16 70 chr3 205663176 205663304 -12373854 - MER5A DNA MER1_type 0 189 69 245 360 40 46 chr3 205663516 205663691 -12373467 - MIR SINE MIR -10 252 79 567 0 0 0 chr3 205663913 205663976 -12373182 + (TTCC)n Simple_repeat Simple_repeat 4 66 0 2045 91 19 82 chr3 205663987 205664305 -12372853 - AluSg SINE Alu -12 298 1 266 281 0 0 chr3 205665308 205665365 -12371793 + polypyrimidine Low_complexity Low_complexity 3 59 0 776 146 4 36 chr3 205665366 205665629 -12371529 + CT-rich Low_complexity Low_complexity 1 254 0 22 70 0 0 chr3 205666084 205666127 -12371031 + GC_rich Low_complexity Low_complexity 1 43 0 281 67 0 22 chr3 205666293 205666338 -12370820 + (TCCC)n Simple_repeat Simple_repeat 4 47 0 411 323 20 31 chr3 205666582 205666777 -12370381 + MIR SINE MIR 20 212 -50 221 323 150 8 chr3 205667011 205667138 -12370020 + MIR3 SINE MIR 53 197 -11 1876 124 21 25 chr3 205667274 205667594 -12369564 + AluSq SINE Alu 1 319 0 38 0 0 0 chr3 205668616 205668654 -12368504 + AT_rich Low_complexity Low_complexity 1 38 0 252 298 12 12 chr3 205669204 205669288 -12367870 + CT-rich Low_complexity Low_complexity 5 88 0 2132 109 19 16 chr3 205669430 205669741 -12367417 - AluSq SINE Alu 0 313 2 2242 209 27 2 chr3 205670089 205670501 -12366657 + MSTB LTR MaLR 1 422 -4 730 250 12 6 chr3 205671722 205671890 -12365268 + MER5A DNA MER1_type 21 189 0 297 245 411 6 chr3 205672083 205672246 -12364912 - MIR SINE MIR -3 259 31 2078 155 63 39 chr3 205672417 205672528 -12364630 + MSTB LTR MaLR 2 109 -317 2338 136 14 8 chr3 205672528 205672881 -12364277 - THE1A LTR MaLR 0 355 1 2078 155 63 39 chr3 205672881 205673182 -12363976 + MSTB LTR MaLR 109 424 -2 1527 300 74 33 chr3 205674011 205674851 -12362307 + L1MC4 LINE L1 7169 8042 0 22 0 0 0 chr3 205675179 205675201 -12361957 + AT_rich Low_complexity Low_complexity 1 22 0 994 150 7 0 chr3 205675432 205675585 -12361573 - THE1C LTR MaLR -220 155 2 238 339 8 39 chr3 205675585 205675715 -12361443 + LTR16C LTR ERVL 365 490 -1 253 243 9 90 chr3 205676696 205676807 -12360351 - MIR SINE MIR -60 202 101 421 238 84 14 chr3 205677504 205677647 -12359511 - L2 LINE L2 0 3313 3161 485 239 7 0 chr3 205677785 205677923 -12359235 + (TATG)n Simple_repeat Simple_repeat 1 139 0 1996 123 3 0 chr3 205677923 205678207 -12358951 - AluSx SINE Alu -27 285 1 573 28 0 0 chr3 205679879 205679950 -12357208 + (TTCC)n Simple_repeat Simple_repeat 4 74 0 2351 95 7 0 chr3 205679959 205680265 -12356893 - AluSg SINE Alu -2 308 1 306 326 132 35 chr3 205680573 205680892 -12356266 - L1MC/D LINE L1 -2055 5753 5404 2134 119 13 0 chr3 205681283 205681585 -12355573 - AluSx SINE Alu 0 312 7 1749 94 4 0 chr3 205682144 205682378 -12354780 + AluSg/x SINE Alu 75 309 -1 314 300 100 27 chr3 205682764 205682914 -12354244 - L1ME LINE L1 -527 5594 5434 397 203 0 14 chr3 205683594 205683663 -12353495 - LTR9 LTR ERV1 0 612 545 245 122 122 0 chr3 205683773 205683814 -12353344 - Alu SINE Alu -256 46 1 1842 117 21 28 chr3 205687606 205687888 -12349270 + AluSx SINE Alu 2 281 -31 189 0 0 0 chr3 205688037 205688058 -12349100 + (A)n Simple_repeat Simple_repeat 1 21 0 902 117 0 0 chr3 205688435 205688563 -12348595 - Alu SINE Alu -13 298 171 197 271 0 0 chr3 205688802 205688850 -12348308 - MIR3 SINE MIR -12 196 149 1141 130 0 6 chr3 205688851 205689012 -12348146 - AluSc SINE Alu -149 160 1 180 269 0 0 chr3 205690396 205690448 -12346710 - L2 LINE L2 0 3272 3221 373 267 38 0 chr3 205691152 205691257 -12345901 - MIR3 SINE MIR -10 198 90 26 30 0 0 chr3 205691908 205691941 -12345217 + AT_rich Low_complexity Low_complexity 1 33 0 2230 255 68 68 chr3 205692026 205692812 -12344346 + MER21B LTR ERV1 20 805 -58 1764 152 30 0 chr3 205692812 205692932 -12344226 + AluSx SINE Alu 3 118 -194 243 0 0 0 chr3 205692932 205692959 -12344199 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1764 152 30 0 chr3 205692959 205693108 -12344050 + AluSx SINE Alu 118 280 -32 261 0 0 0 chr3 205693108 205693137 -12344021 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 2230 255 68 68 chr3 205693137 205693172 -12343986 + MER21B LTR ERV1 803 842 -21 2370 95 0 0 chr3 205696689 205696995 -12340163 - AluSp SINE Alu -7 306 1 4115 211 67 5 chr3 205698270 205699880 -12337278 + L1MB7 LINE L1 4471 6183 -1 344 302 81 41 chr3 205700097 205700269 -12336889 + L3 LINE CR1 1273 1451 -126 192 293 27 27 chr3 205700861 205700936 -12336222 + MIR3 SINE MIR 113 187 -21 709 296 118 0 chr3 205701195 205701398 -12335760 + MIR SINE MIR 5 231 -31 532 224 186 0 chr3 205701875 205702031 -12335127 - MER5A DNA MER1_type 0 189 5 834 102 43 7 chr3 205702297 205702319 -12334839 - L1MA8 LINE L1 -1 6290 6270 1946 147 0 0 chr3 205702319 205702612 -12334546 + AluSq SINE Alu 19 311 -2 834 102 43 7 chr3 205702612 205702767 -12334391 - L1MA8 LINE L1 -21 6270 6107 256 266 114 61 chr3 205702803 205702967 -12334191 + MIR SINE MIR 43 212 -50 228 356 93 0 chr3 205703425 205703543 -12333615 + MIR3 SINE MIR 10 138 -70 1084 318 57 35 chr3 205703989 205704568 -12332590 - MLT1E LTR MaLR -1 592 1 213 290 116 58 chr3 205704740 205704895 -12332263 - MIR3 SINE MIR -7 201 38 186 315 14 27 chr3 205704934 205705007 -12332151 + MIR SINE MIR 30 101 -107 7291 11 0 0 chr3 205705130 205705953 -12331205 + L1HS LINE L1 5332 6154 -1 1074 322 137 8 chr3 205706121 205706646 -12330512 - MLT1G1 LTR MaLR 0 595 3 271 269 0 0 chr3 205706646 205706713 -12330445 + (TATTG)n Simple_repeat Simple_repeat 2 68 0 786 247 80 34 chr3 205706719 205706958 -12330200 - MIR SINE MIR -12 250 1 191 294 20 0 chr3 205708315 205708366 -12328792 - MIR SINE MIR -63 145 94 341 254 53 53 chr3 205708871 205708985 -12328173 + MIR3 SINE MIR 43 156 -52 1378 142 23 4 chr3 205709587 205709847 -12327311 + L1MA5A LINE L1 6031 6295 -2 210 37 0 0 chr3 205710078 205710105 -12327053 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2367 86 0 7 chr3 205710984 205711288 -12325870 + AluSc SINE Alu 1 302 -7 26 0 0 0 chr3 205711682 205711708 -12325450 + AT_rich Low_complexity Low_complexity 1 26 0 2284 120 11 3 chr3 205711771 205712121 -12325037 - THE1A LTR MaLR -2 353 1 182 37 37 0 chr3 205712689 205712716 -12324442 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 300 344 10 0 chr3 205712746 205712842 -12324316 + MIR3 SINE MIR 104 200 -8 1821 206 83 28 chr3 205713129 205713586 -12323572 - MLT1D LTR MaLR -3 502 21 231 317 62 43 chr3 205715130 205715291 -12321867 - MIR3 SINE MIR -33 175 12 2027 280 108 57 chr3 205715503 205716844 -12320314 - L2 LINE L2 -17 3296 1874 571 291 48 68 chr3 205716907 205717158 -12320000 + MIR SINE MIR 11 256 -6 230 274 0 68 chr3 205719252 205719325 -12317833 + L2 LINE L2 3245 3312 -1 387 307 7 40 chr3 205719704 205719854 -12317304 + MIR3 SINE MIR 50 194 -14 24 32 0 0 chr3 205720368 205720399 -12316759 + AT_rich Low_complexity Low_complexity 1 31 0 201 380 20 20 chr3 205720695 205720795 -12316363 + MIR SINE MIR 47 146 -62 247 350 0 10 chr3 205721145 205721245 -12315913 + MIR3 SINE MIR 9 107 -101 288 280 68 30 chr3 205721527 205721706 -12315452 - MIR SINE MIR -50 212 30 364 357 70 6 chr3 205722200 205722357 -12314801 + MIR3 SINE MIR 19 185 -23 216 167 0 24 chr3 205722464 205722506 -12314652 - L2 LINE L2 -1 3312 3272 335 97 0 16 chr3 205722730 205722792 -12314366 + (CA)n Simple_repeat Simple_repeat 1 61 0 218 297 81 61 chr3 205722960 205723108 -12314050 + L2 LINE L2 3118 3268 -4 229 289 0 12 chr3 205724067 205724150 -12313008 - L1ME4a LINE L1 -105 6016 5935 234 0 0 0 chr3 205724150 205724176 -12312982 + (TG)n Simple_repeat Simple_repeat 1 26 0 186 71 0 0 chr3 205724408 205724436 -12312722 + (T)n Simple_repeat Simple_repeat 1 28 0 639 193 0 0 chr3 205727925 205728039 -12309119 + MIR SINE MIR 82 195 -67 262 319 91 78 chr3 205729271 205729503 -12307655 - L2 LINE L2 0 3272 3038 201 308 124 30 chr3 205729824 205729993 -12307165 - L2 LINE L2 -233 3039 2855 207 0 0 0 chr3 205730014 205730037 -12307121 + (TAA)n Simple_repeat Simple_repeat 2 24 0 26 0 0 0 chr3 205730364 205730390 -12306768 + AT_rich Low_complexity Low_complexity 1 26 0 458 250 165 20 chr3 205730402 205730602 -12306556 - MIR SINE MIR -5 257 29 453 215 185 0 chr3 205730702 205730837 -12306321 - L1MB7 LINE L1 -64 6120 5961 419 303 11 40 chr3 205732521 205732696 -12304462 + MIR SINE MIR 5 174 -88 1141 243 82 29 chr3 205732826 205733238 -12303920 + HsTC2 DNA Tc2 1283 1892 -6 516 291 101 4 chr3 205733571 205733909 -12303249 - MLT1I LTR MaLR -2 407 9 505 264 157 0 chr3 205733921 205734099 -12303059 - MIR SINE MIR 0 262 57 489 289 14 21 chr3 205736266 205736408 -12300750 - MIR SINE MIR -74 188 48 200 197 0 14 chr3 205738400 205738471 -12298687 + (TA)n Simple_repeat Simple_repeat 2 71 0 551 241 71 18 chr3 205739162 205739332 -12297826 + MIR SINE MIR 14 192 -70 219 167 0 0 chr3 205739787 205739829 -12297329 + (TA)n Simple_repeat Simple_repeat 1 42 0 24 32 0 0 chr3 205740444 205740475 -12296683 + AT_rich Low_complexity Low_complexity 1 31 0 2053 136 0 3 chr3 205740957 205741252 -12295906 + AluSx SINE Alu 1 294 -18 298 251 151 91 chr3 205741265 205741464 -12295694 - Charlie8 DNA MER1_type -2058 359 149 287 305 145 8 chr3 205742245 205742376 -12294782 + L2 LINE L2 2579 2727 -587 321 131 0 0 chr3 205743003 205743064 -12294094 + (CA)n Simple_repeat Simple_repeat 2 62 0 2028 130 17 0 chr3 205743205 205743504 -12293654 - AluSx SINE Alu -7 305 2 27 29 0 0 chr3 205743578 205743612 -12293546 + AT_rich Low_complexity Low_complexity 1 34 0 270 0 0 0 chr3 205743819 205743849 -12293309 + (TG)n Simple_repeat Simple_repeat 2 31 0 191 36 36 0 chr3 205743970 205743998 -12293160 + (TC)n Simple_repeat Simple_repeat 1 29 0 3437 126 2 7 chr3 205744113 205744653 -12292505 - L1PB1 LINE L1 -3 6148 5612 207 239 94 94 chr3 205745050 205745188 -12291970 - MIR3 SINE MIR -66 142 5 196 380 132 0 chr3 205745279 205745400 -12291758 + L2 LINE L2 3136 3272 0 186 263 89 89 chr3 205747850 205748029 -12289129 + MIR SINE MIR 8 150 -58 234 331 14 74 chr3 205748785 205748933 -12288225 - L2 LINE L2 -192 3080 2942 374 0 22 0 chr3 205750540 205750586 -12286572 + (TG)n Simple_repeat Simple_repeat 1 47 0 300 158 50 20 chr3 205750974 205751075 -12286083 + (TA)n Simple_repeat Simple_repeat 2 105 0 1535 186 64 77 chr3 205751321 205751980 -12285178 - L1MB3 LINE L1 0 6183 5559 519 259 57 57 chr3 205751967 205752214 -12284944 - L1ME LINE L1 -303 5818 5572 * 203 268 27 107 chr3 205752418 205752530 -12284628 + MER5A DNA MER1_type 81 183 -6 1832 151 7 3 chr3 205752575 205752859 -12284299 + AluSx SINE Alu 1 285 -27 322 171 68 45 chr3 205752862 205752950 -12284208 - L1MC4 LINE L1 -1339 6703 6614 185 0 40 0 chr3 205752953 205752978 -12284180 + (TA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr3 205753507 205753530 -12283628 + AT_rich Low_complexity Low_complexity 1 23 0 301 322 25 25 chr3 205753555 205753673 -12283485 - MIR SINE MIR -59 149 32 378 0 0 0 chr3 205753812 205753854 -12283304 + (TAA)n Simple_repeat Simple_repeat 2 43 0 295 324 99 0 chr3 205753866 205753977 -12283181 + Charlie8 DNA MER1_type 144 265 -2152 637 290 91 0 chr3 205754200 205754431 -12282727 + MIR SINE MIR 11 262 0 327 362 9 0 chr3 205754921 205755037 -12282121 + L2 LINE L2 3154 3270 -2 888 340 121 39 chr3 205755489 205756416 -12280742 - L2 LINE L2 -1 3271 2192 355 295 16 33 chr3 205756658 205756780 -12280378 + MER20B DNA MER1_type 1 120 -663 217 114 0 45 chr3 205757235 205757279 -12279879 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 450 0 0 0 chr3 205757904 205757954 -12279204 + (CA)n Simple_repeat Simple_repeat 2 51 0 423 0 0 0 chr3 205758159 205758206 -12278952 + (TA)n Simple_repeat Simple_repeat 1 47 0 2849 212 48 16 chr3 205759040 205759785 -12277373 - L1 LINE L1 -1066 5080 4312 21 0 0 0 chr3 205763444 205763465 -12273693 + AT_rich Low_complexity Low_complexity 1 21 0 252 348 0 11 chr3 205763662 205763751 -12273407 + GA-rich Low_complexity Low_complexity 3 90 0 309 156 0 0 chr3 205764031 205764108 -12273050 + (TA)n Simple_repeat Simple_repeat 1 77 0 2112 108 0 7 chr3 205764692 205765018 -12272140 - AluSx SINE Alu 0 324 1 183 387 19 9 chr3 205765370 205765476 -12271682 - MIR SINE MIR -62 146 40 193 327 60 67 chr3 205765746 205765896 -12271262 + L2 LINE L2 2554 2702 -612 4721 169 21 31 chr3 205766525 205767809 -12269349 - L1PA8A LINE L1 -630 5501 4207 408 328 24 8 chr3 205767975 205768100 -12269058 - MIR3 SINE MIR -12 196 70 2388 103 0 0 chr3 205769801 205770111 -12267047 - AluSq SINE Alu -1 312 3 872 272 5 5 chr3 205770272 205770496 -12266662 + MER58A DNA MER1_type 1 224 0 2346 100 0 0 chr3 205772203 205772503 -12264655 + AluSg SINE Alu 1 300 -10 2049 141 3 0 chr3 205772714 205773012 -12264146 - AluSx SINE Alu -13 299 1 441 108 0 75 chr3 205774122 205774242 -12262916 + (TTCCC)n Simple_repeat Simple_repeat 2 112 0 255 139 0 23 chr3 205774242 205774285 -12262873 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 359 73 18 0 chr3 205774343 205774398 -12262760 + (TTCC)n Simple_repeat Simple_repeat 3 58 0 197 252 39 78 chr3 205774911 205775014 -12262144 - MIR SINE MIR -73 189 91 1095 241 97 19 chr3 205775608 205775928 -12261230 - MER2 DNA MER2_type 0 345 1 * 2017 170 11 11 chr3 205775928 205776286 -12260872 - MLT1B LTR MaLR -32 358 1 255 255 11 0 chr3 205776286 205776379 -12260779 - MER69 DNA AcHobo -90 2436 2343 434 210 138 6 chr3 205776384 205776551 -12260607 - MER69 DNA AcHobo -155 2371 2183 316 224 30 0 chr3 205776553 205776620 -12260538 + L1PA15 LINE L1 1933 2001 -4145 11028 202 71 16 chr3 205776736 205779983 -12257175 + L1PA15 LINE L1 2245 5672 -493 434 71 0 0 chr3 205779983 205780039 -12257119 - MADE1 DNA Mariner 0 80 25 3069 136 8 2 chr3 205780045 205780531 -12256627 + L1PA15 LINE L1 5677 6165 0 478 220 45 34 chr3 205780546 205780723 -12256435 - MER69 DNA AcHobo -331 2195 2017 1429 293 40 23 chr3 205780756 205781279 -12255879 - MER69 DNA AcHobo -485 741 210 393 184 0 13 chr3 205781304 205781380 -12255778 - MER69 DNA AcHobo -1117 109 35 258 267 58 50 chr3 205781642 205781762 -12255396 - L2 LINE L2 -194 3078 2958 222 300 0 0 chr3 205783237 205783287 -12253871 - L2 LINE L2 -15 3298 3249 206 231 31 15 chr3 205784166 205784231 -12252927 - MIR SINE MIR -71 191 126 202 373 27 0 chr3 205784239 205784314 -12252844 - MIR3 SINE MIR -17 191 115 302 333 94 28 chr3 205784750 205784963 -12252195 + L3 LINE CR1 1039 1265 -312 208 338 130 0 chr3 205785088 205785165 -12251993 + L3 LINE CR1 1368 1454 -123 536 335 70 13 chr3 205785182 205785409 -12251749 - MIR SINE MIR 0 262 23 300 314 83 26 chr3 205787020 205787176 -12249982 + MIR3 SINE MIR 38 202 -6 2346 98 3 0 chr3 205787342 205787639 -12249519 - AluSp SINE Alu -15 298 1 225 0 0 0 chr3 205789755 205789780 -12247378 + (TTA)n Simple_repeat Simple_repeat 3 27 0 23487 31 0 1 chr3 205789780 205793359 -12243799 - L1PA3 LINE L1 -18 6137 2561 6238 52 146 10 chr3 205793361 205794250 -12242908 - L1PA3 LINE L1 -5134 1012 3 228 179 36 54 chr3 205794482 205794538 -12242620 - L2 LINE L2 -4 3268 3214 23 0 0 0 chr3 205795148 205795171 -12241987 + AT_rich Low_complexity Low_complexity 1 23 0 3624 124 6 0 chr3 205795332 205795856 -12241302 - MER1A DNA MER1_type 0 527 1 202 208 167 0 chr3 205795864 205795912 -12241246 + MIR SINE MIR 82 137 -71 * 345 271 144 8 chr3 205795907 205796025 -12241133 + L2 LINE L2 3137 3270 -2 248 262 25 82 chr3 205797070 205797192 -12239966 + MIR SINE MIR 98 212 -50 22 0 0 0 chr3 205798791 205798813 -12238345 + AT_rich Low_complexity Low_complexity 1 22 0 216 97 0 0 chr3 205799126 205799157 -12238001 + (TCTA)n Simple_repeat Simple_repeat 1 31 0 190 231 96 0 chr3 205799237 205799289 -12237869 - L2 LINE L2 0 3272 3216 706 266 40 0 chr3 205799911 205800110 -12237048 + MER58A DNA MER1_type 8 214 -10 2113 130 72 17 chr3 205800642 205800987 -12236171 - THE1B LTR MaLR 0 364 1 237 317 99 50 chr3 205801027 205801188 -12235970 - MIR SINE MIR -65 197 29 220 354 61 0 chr3 205801779 205801861 -12235297 + MIR SINE MIR 29 115 -147 478 261 120 16 chr3 205802282 205802466 -12234692 + MIR SINE MIR 5 207 -55 188 67 33 0 chr3 205803685 205803715 -12233443 + (TG)n Simple_repeat Simple_repeat 2 32 0 2276 110 0 7 chr3 205805065 205805375 -12231783 + AluSq SINE Alu 1 308 -5 205 350 165 0 chr3 205806003 205806106 -12231052 - MIR SINE MIR -73 135 16 207 0 0 0 chr3 205806416 205806439 -12230719 + (TA)n Simple_repeat Simple_repeat 1 23 0 300 27 0 0 chr3 205807280 205807317 -12229841 + (TTTAG)n Simple_repeat Simple_repeat 3 39 0 1773 123 0 8 chr3 205807321 205807565 -12229593 - AluSx SINE Alu -32 280 39 408 287 68 56 chr3 205807571 205807822 -12229336 - HAL1 LINE L1 -2 2505 2252 270 0 0 0 chr3 205808968 205808998 -12228160 + (CA)n Simple_repeat Simple_repeat 1 30 0 214 351 189 0 chr3 205809590 205809701 -12227457 - MIR SINE MIR -82 180 49 435 179 28 101 chr3 205809826 205810005 -12227153 - L1MC1 LINE L1 -1 6332 6167 278 242 7 34 chr3 205810600 205810749 -12226409 + CT-rich Low_complexity Low_complexity 2 146 0 190 217 29 0 chr3 205811023 205811092 -12226066 + CT-rich Low_complexity Low_complexity 3 73 0 193 308 70 56 chr3 205812100 205812243 -12224915 + MIR3 SINE MIR 13 157 -51 23 0 0 0 chr3 205812385 205812408 -12224750 + AT_rich Low_complexity Low_complexity 1 23 0 1192 176 0 127 chr3 205812484 205812807 -12224351 + AluJb SINE Alu 1 282 -30 1028 249 18 56 chr3 205814169 205814563 -12222595 - MLT2C1 LTR ERVL -18 379 1 236 303 118 43 chr3 205815090 205815344 -12221814 + L2 LINE L2 765 1037 -2277 538 324 109 75 chr3 205815473 205815581 -12221577 + L2 LINE L2 2026 2129 -1185 2059 106 9 70 chr3 205815581 205815911 -12221247 - AluSx SINE Alu 0 312 3 538 324 109 75 chr3 205815911 205816491 -12220667 + L2 LINE L2 2129 2737 -577 341 313 132 7 chr3 205816513 205816657 -12220501 + MIR SINE MIR 3 164 -98 320 311 59 131 chr3 205816705 205817164 -12219994 + L2 LINE L2 2840 3265 -7 315 0 0 0 chr3 205817979 205818014 -12219144 + (TG)n Simple_repeat Simple_repeat 1 35 0 223 212 15 45 chr3 205818132 205818198 -12218960 + T-rich Low_complexity Low_complexity 1 64 0 1396 189 51 0 chr3 205820020 205820316 -12216842 - L1M4 LINE L1 -370 5814 5504 243 337 54 33 chr3 205820371 205820463 -12216695 + L2 LINE L2 3161 3254 -18 613 80 0 11 chr3 205820542 205820630 -12216528 + L1PA7 LINE L1 6048 6134 -20 1734 161 24 5 chr3 205820712 205821089 -12216069 - L1PA16 LINE L1 -1 6164 5754 2149 110 0 0 chr3 205821170 205821477 -12215681 - AluSx SINE Alu 0 307 1 792 260 147 11 chr3 205821562 205821847 -12215311 - MER5C DNA MER1_type 0 324 1 309 356 34 11 chr3 205822081 205822258 -12214900 + MIR3 SINE MIR 2 182 -26 476 278 48 43 chr3 205822680 205822867 -12214291 + MIR SINE MIR 59 246 -16 625 243 67 43 chr3 205823046 205823256 -12213902 - MIR SINE MIR 0 262 48 206 216 0 0 chr3 205823986 205824023 -12213135 + MIR SINE MIR 11 47 -215 292 287 120 19 chr3 205824097 205824205 -12212953 - L2 LINE L2 -15 3257 3139 963 268 112 22 chr3 205824851 205825407 -12211751 + L1MC4 LINE L1 7281 7886 -156 210 156 0 0 chr3 205825413 205825458 -12211700 + GA-rich Low_complexity Low_complexity 2 46 0 314 303 83 9 chr3 205825889 205825998 -12211160 - MIR SINE MIR -64 144 28 2535 67 0 0 chr3 205826928 205827227 -12209931 + AluSc SINE Alu 11 309 0 454 316 224 13 chr3 205828282 205828671 -12208487 + L3 LINE CR1 1102 1572 -5 237 347 122 0 chr3 205828770 205828917 -12208241 - MIR SINE MIR -6 256 92 528 266 0 0 chr3 205829634 205829803 -12207355 - AluSp SINE Alu -10 303 135 231 248 7 78 chr3 205830122 205830263 -12206895 + (CCCCG)n Simple_repeat Simple_repeat 1 131 0 3187 168 34 19 chr3 205830427 205831279 -12205879 - L1MC1 LINE L1 -218 6120 5194 1799 151 51 33 chr3 205833226 205833557 -12203601 - MER1B DNA MER1_type 0 337 1 324 48 0 0 chr3 205834132 205834174 -12202984 + (TG)n Simple_repeat Simple_repeat 1 42 0 2349 90 6 10 chr3 205834985 205835297 -12201861 - AluSq SINE Alu -2 311 1 273 260 0 40 chr3 205835479 205835579 -12201579 - L3 LINE CR1 -695 882 787 238 330 82 10 chr3 205835979 205836076 -12201082 + MIR3 SINE MIR 3 106 -102 401 273 16 16 chr3 205836201 205836322 -12200836 - L2 LINE L2 -3 3310 3190 2444 68 0 0 chr3 205836733 205837026 -12200132 + AluY SINE Alu 1 293 -18 240 288 166 44 chr3 205837036 205837197 -12199961 - MIR SINE MIR -51 211 34 273 152 0 0 chr3 205838367 205838413 -12198745 + U2 snRNA snRNA 1 46 -142 5313 58 26 21 chr3 205838775 205838831 -12198327 + L1PA5 LINE L1 5423 5477 -677 2525 67 0 0 chr3 205838831 205839131 -12198027 + AluY SINE Alu 1 300 -11 5313 58 26 21 chr3 205839131 205839799 -12197359 + L1PA5 LINE L1 5477 6151 -3 23 33 0 0 chr3 205839799 205839829 -12197329 + AT_rich Low_complexity Low_complexity 1 30 0 260 281 82 82 chr3 205839836 205839982 -12197176 - MIR3 SINE MIR -19 189 44 183 42 0 0 chr3 205842762 205842786 -12194372 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 26 30 0 0 chr3 205842930 205842963 -12194195 + AT_rich Low_complexity Low_complexity 1 33 0 198 71 0 0 chr3 205843414 205843442 -12193716 + (T)n Simple_repeat Simple_repeat 1 28 0 584 309 77 18 chr3 205844132 205844352 -12192806 - MIR SINE MIR -10 252 20 437 372 17 0 chr3 205845100 205845272 -12191886 + MIR3 SINE MIR 34 208 0 1795 239 85 22 chr3 205846257 205846809 -12190349 + MLT1E LTR MaLR 7 593 0 212 405 0 0 chr3 205848060 205848139 -12189019 - MIR SINE MIR -164 98 20 218 95 24 0 chr3 205848157 205848199 -12188959 + (CATA)n Simple_repeat Simple_repeat 1 43 0 198 314 38 57 chr3 205848201 205848306 -12188852 - L2 LINE L2 -8 3264 3162 274 316 129 7 chr3 205848416 205848555 -12188603 + MIR SINE MIR 92 247 -15 238 305 77 73 chr3 205848630 205848795 -12188363 + MIR3 SINE MIR 12 176 -65 396 0 0 0 chr3 205849054 205849098 -12188060 + (TG)n Simple_repeat Simple_repeat 1 44 0 225 226 0 38 chr3 205849666 205849719 -12187439 + CT-rich Low_complexity Low_complexity 1 51 0 2357 95 3 0 chr3 205850527 205850831 -12186327 - AluSc SINE Alu -4 305 1 218 209 23 0 chr3 205851183 205851226 -12185932 + GA-rich Low_complexity Low_complexity 1 44 0 472 270 35 0 chr3 205851438 205851553 -12185605 + L2 LINE L2 3195 3313 0 389 285 74 57 chr3 205851558 205851733 -12185425 - MIR SINE MIR -59 149 20 687 240 111 31 chr3 205854513 205854738 -12182420 - MIR SINE MIR -12 250 8 257 262 78 50 chr3 205855594 205855735 -12181423 + MIR SINE MIR 107 251 -11 27 0 0 0 chr3 205855743 205855770 -12181388 + AT_rich Low_complexity Low_complexity 1 27 0 502 298 36 12 chr3 205856072 205856240 -12180918 - MER5B DNA MER1_type -2 176 5 205 176 0 118 chr3 205856694 205856745 -12180413 - MIR3 SINE MIR -40 168 124 1696 139 99 12 chr3 205856876 205857221 -12179937 + THE1C LTR MaLR 1 375 0 1706 63 0 5 chr3 205857313 205857520 -12179638 - AluY SINE Alu -13 298 93 205 250 0 0 chr3 205857994 205858034 -12179124 - L2 LINE L2 -7 3265 3226 433 330 35 0 chr3 205858238 205858353 -12178805 - L2 LINE L2 -8 3264 3146 253 218 0 18 chr3 205858360 205858415 -12178743 + L2 LINE L2 3137 3190 -82 945 62 0 0 chr3 205859021 205859149 -12178009 - L1MA6 LINE L1 -319 5981 5854 278 224 0 0 chr3 205859298 205859347 -12177811 - MIR SINE MIR -85 123 75 335 341 53 24 chr3 205859644 205859814 -12177344 - MIR SINE MIR -78 184 10 315 340 78 7 chr3 205860260 205860401 -12176757 + MIR SINE MIR 7 157 -105 364 299 180 0 chr3 205860810 205861004 -12176154 + MIR SINE MIR 5 233 -29 340 307 18 18 chr3 205861176 205861290 -12175868 - MIR SINE MIR -76 132 19 184 292 0 0 chr3 205862228 205862276 -12174882 + L2 LINE L2 3266 3313 0 538 307 13 0 chr3 205862736 205862886 -12174272 + MIR SINE MIR 32 183 -79 310 344 20 46 chr3 205863453 205863604 -12173554 + MIR3 SINE MIR 46 192 -16 22 70 0 0 chr3 205863825 205863868 -12173290 + AT_rich Low_complexity Low_complexity 1 43 0 2274 91 19 7 chr3 205863958 205864266 -12172892 + AluSp SINE Alu 1 312 -1 211 260 110 27 chr3 205864276 205864349 -12172809 + MER5A DNA MER1_type 8 86 -103 417 237 231 6 chr3 205864535 205864708 -12172450 + MIR SINE MIR 32 243 -19 209 366 67 15 chr3 205865148 205865282 -12171876 - MIR SINE MIR -117 145 5 248 270 71 41 chr3 205865425 205865534 -12171624 + MIR SINE MIR 6 109 -99 219 36 0 0 chr3 205865760 205865788 -12171370 + (TC)n Simple_repeat Simple_repeat 2 29 0 600 108 0 7 chr3 205865900 205866124 -12171034 + AluSx SINE Alu 13 282 -27 379 376 27 0 chr3 205866129 205866278 -12170880 - MIR SINE MIR -84 178 26 304 338 30 0 chr3 205867186 205867319 -12169839 - L1ME4a LINE L1 -12 6109 5973 315 315 0 0 chr3 205870482 205870571 -12166587 - MIR SINE MIR -65 143 55 566 143 19 0 chr3 205871109 205871214 -12165944 - MLT1J2 LTR MaLR -341 109 3 2354 90 0 31 chr3 205871472 205871793 -12165365 - AluY SINE Alu 0 311 1 218 152 0 22 chr3 205871847 205871893 -12165265 + CT-rich Low_complexity Low_complexity 1 45 0 180 317 79 10 chr3 205873884 205873985 -12163173 - MIR SINE MIR -66 196 89 234 0 0 0 chr3 205874295 205874321 -12162837 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1726 164 26 32 chr3 205875144 205875454 -12161704 - AluSx SINE Alu -4 308 1 206 366 0 28 chr3 205875462 205875533 -12161625 + L2 LINE L2 3116 3184 -88 755 101 17 8 chr3 205876700 205876819 -12160339 - L1PB2 LINE L1 0 6151 6032 315 213 9 37 chr3 205876914 205877022 -12160136 - L1PB2 LINE L1 -120 6031 5927 385 261 118 17 chr3 205877599 205877718 -12159440 - MIR3 SINE MIR -63 145 15 1272 141 0 70 chr3 205878196 205878409 -12158749 + AluJb SINE Alu 84 281 -31 217 0 0 57 chr3 205878409 205878444 -12158714 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 2160 109 0 0 chr3 205878876 205879194 -12157964 - AluSx SINE Alu 0 318 1 792 260 147 11 chr3 205879279 205879564 -12157594 - MER5C DNA MER1_type 0 324 1 309 356 34 11 chr3 205879798 205879975 -12157183 + MIR3 SINE MIR 2 182 -26 464 283 48 43 chr3 205880396 205880583 -12156575 + MIR SINE MIR 59 246 -16 625 243 67 43 chr3 205880762 205880972 -12156186 - MIR SINE MIR 0 262 48 206 216 0 0 chr3 205881702 205881739 -12155419 + MIR SINE MIR 11 47 -215 292 287 120 19 chr3 205881813 205881921 -12155237 - L2 LINE L2 -15 3257 3139 960 277 106 16 chr3 205882567 205883123 -12154035 + L1MC4 LINE L1 7281 7886 -156 210 156 0 0 chr3 205883129 205883174 -12153984 + GA-rich Low_complexity Low_complexity 2 46 0 314 303 83 9 chr3 205883605 205883714 -12153444 - MIR SINE MIR -64 144 28 2432 81 0 0 chr3 205884644 205884942 -12152216 + AluSc SINE Alu 11 308 -1 398 324 224 13 chr3 205885998 205886387 -12150771 + L3 LINE CR1 1102 1572 -5 237 347 122 0 chr3 205886486 205886633 -12150525 - MIR SINE MIR -6 256 92 2154 111 0 13 chr3 205887351 205887658 -12149500 - AluSp SINE Alu -10 303 1 256 288 180 0 chr3 205887687 205887798 -12149360 - MIR3 SINE MIR 0 208 78 444 275 38 31 chr3 205888097 205888257 -12148901 + L2 LINE L2 3152 3312 -1 449 250 138 20 chr3 205888369 205888521 -12148637 - MIR3 SINE MIR -3 205 36 2136 138 0 0 chr3 205889447 205889751 -12147407 - AluSg SINE Alu -6 304 1 241 309 10 41 chr3 205889773 205889870 -12147288 - L2 LINE L2 0 3313 3220 21 0 0 0 chr3 205890149 205890170 -12146988 + AT_rich Low_complexity Low_complexity 1 21 0 334 214 10 29 chr3 205890590 205890693 -12146465 + MER113 DNA MER1_type? 15 115 -406 21 0 0 0 chr3 205890794 205890815 -12146343 + AT_rich Low_complexity Low_complexity 1 21 0 1522 204 0 11 chr3 205890831 205891122 -12146036 + AluJb SINE Alu 17 304 0 183 327 119 10 chr3 205891378 205891479 -12145679 + MIR3 SINE MIR 66 177 -31 207 283 17 17 chr3 205891981 205892041 -12145117 + MIR3 SINE MIR 2 61 -147 378 282 213 5 chr3 205893626 205893814 -12143344 - MIR SINE MIR 0 262 36 245 274 39 59 chr3 205895184 205895286 -12141872 - L2 LINE L2 -1 3312 3213 332 377 68 19 chr3 205895533 205895798 -12141360 - L2 LINE L2 -463 2851 2574 513 259 96 74 chr3 205895969 205896239 -12140919 - L2 LINE L2 -16 3297 3022 266 282 118 0 chr3 205896488 205896598 -12140560 - MIR3 SINE MIR -8 200 78 554 253 76 40 chr3 205896664 205896862 -12140296 + MIR SINE MIR 39 243 -19 27 49 0 0 chr3 205897034 205897075 -12140083 + AT_rich Low_complexity Low_complexity 1 41 0 557 282 98 0 chr3 205897219 205897428 -12139730 - MIR SINE MIR -12 250 12 201 256 0 0 chr3 205897538 205897581 -12139577 - MIR3 SINE MIR 0 208 166 320 279 36 120 chr3 205898582 205899003 -12138155 - L2 LINE L2 -209 3063 2677 1633 167 3 46 chr3 205899243 205899549 -12137609 + AluJo SINE Alu 1 293 -19 218 260 82 96 chr3 205899785 205899931 -12137227 - MIR3 SINE MIR -28 180 37 1544 233 35 28 chr3 205900220 205900688 -12136470 - MLT1D LTR MaLR -31 536 7 2145 104 0 3 chr3 205901048 205901370 -12135788 - AluSg SINE Alu 0 310 1 433 35 0 0 chr3 205902024 205902081 -12135077 + AluY SINE Alu 1 57 -261 1541 106 5 0 chr3 205902081 205902288 -12134870 + AluSg/x SINE Alu 96 303 -7 252 0 0 0 chr3 205902839 205902867 -12134291 + (TG)n Simple_repeat Simple_repeat 2 29 0 331 294 168 22 chr3 205903563 205903879 -12133279 - L1M4 LINE L1 -2978 3168 2807 418 306 75 12 chr3 205904155 205904315 -12132843 + L3b LINE CR1 1381 1550 -33 2305 109 0 6 chr3 205904919 205905232 -12131926 - AluSq SINE Alu -2 311 1 29 98 0 0 chr3 205905757 205905849 -12131309 + AT_rich Low_complexity Low_complexity 1 92 0 292 305 38 11 chr3 205906051 205906182 -12130976 + L1ME4a LINE L1 5496 5626 -495 377 65 0 48 chr3 205906185 205906247 -12130911 + (TGGA)n Simple_repeat Simple_repeat 3 61 0 291 230 10 10 chr3 205906256 205906356 -12130802 + (TA)n Simple_repeat Simple_repeat 2 101 0 369 283 48 60 chr3 205906557 205906723 -12130435 + L1ME4a LINE L1 5956 6119 -2 422 326 132 5 chr3 205907836 205908026 -12129132 - MIR SINE MIR -31 231 18 198 350 75 25 chr3 205908881 205909001 -12128157 - L2 LINE L2 -229 3043 2918 1038 254 63 8 chr3 205910834 205911185 -12125973 - L1M4 LINE L1 -1347 4799 4430 2989 212 33 56 chr3 205911210 205912379 -12124779 + L1ME1 LINE L1 5009 6161 -5 25 75 0 0 chr3 205912730 205912783 -12124375 + AT_rich Low_complexity Low_complexity 1 53 0 203 374 91 0 chr3 205912874 205912973 -12124185 + MER91A DNA MER1_type 44 151 -45 258 296 130 17 chr3 205913188 205913303 -12123855 - L3 LINE CR1 -7 1570 1443 289 307 0 18 chr3 205913634 205913748 -12123410 + (CATA)n Simple_repeat Simple_repeat 1 112 0 367 365 27 7 chr3 205914013 205914161 -12122997 + MIR SINE MIR 20 170 -92 304 367 73 0 chr3 205914207 205914357 -12122801 + L2 LINE L2 2600 2760 -554 215 326 79 34 chr3 205914762 205914851 -12122307 + L2 LINE L2 3168 3260 -12 206 220 200 40 chr3 205915008 205915108 -12122050 + L2 LINE L2 3189 3304 -9 414 246 94 14 chr3 205915400 205915538 -12121620 - MIR3 SINE MIR -49 159 11 197 366 14 42 chr3 205915687 205915829 -12121329 - L3b LINE CR1 -316 1267 1130 228 216 0 0 chr3 205917776 205917827 -12119331 + (CA)n Simple_repeat Simple_repeat 2 52 0 226 314 81 69 chr3 205917827 205917989 -12119169 - MIR SINE MIR -58 204 42 2211 98 7 3 chr3 205918049 205918334 -12118824 + AluSq SINE Alu 1 286 -27 265 356 72 36 chr3 205918791 205918985 -12118173 + MIR3 SINE MIR 1 201 -7 874 245 84 43 chr3 205919466 205919818 -12117340 - MLT1A1 LTR MaLR 0 375 1 2214 123 0 7 chr3 205919896 205920197 -12116961 + AluSx SINE Alu 1 299 -13 206 303 8 92 chr3 205920502 205920621 -12116537 + MIR SINE MIR 103 211 -51 747 266 48 0 chr3 205921152 205921400 -12115758 + MIR SINE MIR 2 261 -1 227 302 59 20 chr3 205921868 205921969 -12115189 - MIR SINE MIR -47 161 55 249 240 171 50 chr3 205922635 205922829 -12114329 + MIR SINE MIR 22 247 -15 366 23 0 0 chr3 205923121 205923164 -12113994 + (TG)n Simple_repeat Simple_repeat 2 44 0 215 213 0 0 chr3 205923303 205923350 -12113808 + (TG)n Simple_repeat Simple_repeat 2 48 0 706 184 30 54 chr3 205924096 205924264 -12112894 + MER5B DNA MER1_type 15 178 0 1883 157 0 19 chr3 205925067 205925423 -12111735 + AluJo SINE Alu 1 350 0 529 311 87 19 chr3 205926685 205927007 -12110151 - MLT1I LTR MaLR -2 407 64 1459 104 0 20 chr3 205927392 205927641 -12109517 - L1P LINE L1 -1403 4743 4500 278 128 12 58 chr3 205928308 205928398 -12108760 + (TAA)n Simple_repeat Simple_repeat 1 85 0 378 303 49 0 chr3 205929714 205929856 -12107302 - MIR SINE MIR -6 256 108 471 298 162 38 chr3 205930440 205930786 -12106372 + L1M2 LINE L1 995 1383 -5466 537 44 0 0 chr3 205931935 205932003 -12105155 + (A)n Simple_repeat Simple_repeat 1 68 0 213 319 53 32 chr3 205933139 205933233 -12103925 + L2 LINE L2 2958 3053 -219 180 97 0 0 chr3 205934001 205934032 -12103126 + (T)n Simple_repeat Simple_repeat 1 31 0 2221 105 3 0 chr3 205934288 205934583 -12102575 - AluSx SINE Alu -16 296 1 755 203 218 5 chr3 205934893 205935090 -12102068 + MIR SINE MIR 3 241 -21 21 36 0 0 chr3 205935312 205935340 -12101818 + AT_rich Low_complexity Low_complexity 1 28 0 652 310 128 9 chr3 205935461 205935806 -12101352 + L3 LINE CR1 1153 1538 -39 293 47 23 0 chr3 205936520 205936563 -12100595 + (TG)n Simple_repeat Simple_repeat 1 44 0 198 321 38 47 chr3 205937613 205937719 -12099439 - MIR3 SINE MIR -6 202 98 349 331 95 0 chr3 205938308 205938456 -12098702 + MIR SINE MIR 49 210 -52 308 324 89 38 chr3 205939720 205940090 -12097068 - L1ME4a LINE L1 -219 5902 5514 299 236 137 11 chr3 205940338 205940427 -12096731 + MIR SINE MIR 54 153 -63 392 0 21 0 chr3 205941414 205941462 -12095696 + (CA)n Simple_repeat Simple_repeat 1 49 0 746 173 0 8 chr3 205941830 205941957 -12095201 - FLAM_A SINE Alu -10 132 7 2308 104 3 3 chr3 205941984 205942293 -12094865 - AluSx SINE Alu -3 309 1 332 287 120 42 chr3 205942543 205942759 -12094399 - MIR SINE MIR -7 255 23 398 305 130 56 chr3 205944305 205944713 -12092445 + L1M4 LINE L1 3522 3956 -2190 495 256 69 50 chr3 205945668 205945828 -12091330 - MIR3 SINE MIR -3 205 43 2286 78 6 44 chr3 205946291 205946612 -12090546 - AluY SINE Alu -2 309 1 194 103 0 51 chr3 205947377 205947389 -12089769 + (GAAA)n Simple_repeat Simple_repeat 2 13 -25 2375 106 0 3 chr3 205947389 205947701 -12089457 + AluSx SINE Alu 1 311 -1 1149 81 0 7 chr3 205947552 205947727 -12089431 + AluSg/x SINE Alu 164 337 0 194 103 0 51 chr3 205947701 205947727 -12089431 + (GAAA)n Simple_repeat Simple_repeat 13 38 0 * 201 298 64 96 chr3 205948027 205948215 -12088943 + MER5A DNA MER1_type 7 188 -1 1722 66 5 0 chr3 205948607 205948848 -12088310 - AluY SINE Alu 0 309 68 29 0 0 0 chr3 205949483 205949512 -12087646 + AT_rich Low_complexity Low_complexity 1 29 0 1312 230 22 27 chr3 205950701 205951066 -12086092 - MLT1A2 LTR MaLR -11 363 1 2205 112 0 3 chr3 205951178 205951473 -12085685 - AluSc SINE Alu -15 294 1 425 304 20 136 chr3 205952121 205952466 -12084692 - L2 LINE L2 -9 3263 2959 250 261 46 0 chr3 205952895 205952960 -12084198 - MIR3 SINE MIR -25 183 116 336 256 73 0 chr3 205953271 205953353 -12083805 - MIR SINE MIR -71 191 104 296 404 43 0 chr3 205953476 205953617 -12083541 - L2 LINE L2 -4 3268 3122 187 247 12 59 chr3 205953770 205953855 -12083303 + L2 LINE L2 3186 3266 -6 618 303 141 4 chr3 205955789 205956030 -12081128 - L3 LINE CR1 -123 1454 1181 279 268 93 0 chr3 205956084 205956181 -12080977 - MIR SINE MIR -125 137 32 322 304 70 9 chr3 205957390 205957505 -12079653 + L3 LINE CR1 1434 1555 -22 1727 129 138 12 chr3 205957513 205957729 -12079429 - THE1C LTR MaLR 0 375 101 2340 66 0 30 chr3 205957729 205958032 -12079126 + AluY SINE Alu 6 299 -12 1727 129 138 12 chr3 205958032 205958148 -12079010 - THE1C LTR MaLR -274 101 1 441 330 20 35 chr3 205958481 205958684 -12078474 + MIR SINE MIR 53 252 -10 366 313 180 52 chr3 205958760 205959391 -12077767 + L2 LINE L2 1071 1833 -1481 2950 117 7 2 chr3 205959391 205959834 -12077324 + L1PA14 LINE L1 5708 6152 -9 366 313 180 52 chr3 205959834 205960024 -12077134 + L2 LINE L2 1833 1997 -1317 2391 120 3 13 chr3 205960048 205960423 -12076735 - L1PB1 LINE L1 -2 6149 5779 249 9 5 203 chr3 205960441 205960663 -12076495 + (TA)n Simple_repeat Simple_repeat 2 179 0 344 62 26 113 chr3 205960685 205960879 -12076279 + (TA)n Simple_repeat Simple_repeat 1 177 0 1572 68 17 8 chr3 205960879 205960900 -12076258 - L1PB1 LINE L1 -350 5801 5782 279 54 0 0 chr3 205960900 205960937 -12076221 + (CA)n Simple_repeat Simple_repeat 2 38 0 1572 68 17 8 chr3 205960937 205961149 -12076009 - L1PB1 LINE L1 -369 5782 5566 218 304 149 7 chr3 205961180 205961328 -12075830 + L2 LINE L2 2071 2239 -1075 532 143 9 9 chr3 205961339 205961444 -12075714 - L1MC/D LINE L1 -865 5494 5390 2367 102 0 10 chr3 205961450 205961764 -12075394 + AluSx SINE Alu 1 311 -1 3558 191 19 52 chr3 205961775 205962667 -12074491 + L1MD2 LINE L1 5497 6359 0 33 25 0 0 chr3 205962707 205962747 -12074411 + AT_rich Low_complexity Low_complexity 1 40 0 201 74 0 0 chr3 205962777 205962804 -12074354 + (CA)n Simple_repeat Simple_repeat 2 28 0 914 344 82 16 chr3 205962836 205963473 -12073685 + L2 LINE L2 1833 2511 -803 1058 99 11 11 chr3 205964458 205964639 -12072519 + Tigger1 DNA MER2_type 2209 2389 -29 21 36 0 0 chr3 205965049 205965077 -12072081 + AT_rich Low_complexity Low_complexity 1 28 0 445 323 93 14 chr3 205965132 205965411 -12071747 + L1ME LINE L1 5338 5638 -483 233 128 21 0 chr3 205965672 205965719 -12071439 + (TG)n Simple_repeat Simple_repeat 2 49 0 2165 80 39 7 chr3 205965904 205966190 -12070968 + AluSx SINE Alu 1 295 -17 186 122 20 122 chr3 205966464 205966513 -12070645 - MIR3 SINE MIR -9 199 156 445 342 67 76 chr3 205966895 205967345 -12069813 + L2 LINE L2 2825 3270 -2 1966 141 3 7 chr3 205968540 205968839 -12068319 - AluSx SINE Alu -14 298 1 210 229 12 108 chr3 205969103 205969186 -12067972 - L2 LINE L2 -50 3222 3148 547 271 0 30 chr3 205969513 205969646 -12067512 + MER5B DNA MER1_type 1 129 -49 185 358 111 22 chr3 205969927 205970153 -12067005 + L3 LINE CR1 1317 1562 -15 2288 104 3 0 chr3 205970213 205970521 -12066637 + AluSc SINE Alu 1 309 0 510 299 104 53 chr3 205970628 205971042 -12066116 - MLT1J2 LTR MaLR -13 437 3 309 51 0 0 chr3 205971047 205971086 -12066072 + (CAT)n Simple_repeat Simple_repeat 3 41 0 438 314 197 16 chr3 205971338 205971748 -12065410 - L2 LINE L2 0 3272 2771 315 71 0 0 chr3 205972473 205972515 -12064643 + (TCC)n Simple_repeat Simple_repeat 3 44 0 212 330 92 25 chr3 205972857 205973096 -12064062 + L2 LINE L2 2830 3084 -188 221 235 74 49 chr3 205973284 205973365 -12063793 + MIR SINE MIR 70 152 -110 248 289 91 41 chr3 205973568 205973689 -12063469 - MIR SINE MIR -118 144 18 401 277 28 45 chr3 205973810 205973987 -12063171 - L3 LINE CR1 -318 1259 1086 521 304 72 46 chr3 205975341 205975600 -12061558 - L1MC4a LINE L1 -1883 5925 5674 2555 60 0 0 chr3 205975600 205975902 -12061256 - AluY SINE Alu -9 302 1 521 304 72 46 chr3 205975902 205976181 -12060977 - L1MC4a LINE L1 -2134 5674 5373 183 100 0 0 chr3 205976217 205976247 -12060911 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 21 57 0 0 chr3 205976815 205976850 -12060308 + AT_rich Low_complexity Low_complexity 1 35 0 259 226 60 24 chr3 205976977 205977061 -12060097 - MIR3 SINE MIR -120 88 2 * 268 228 43 22 chr3 205977061 205977140 -12060018 + MIR SINE MIR 73 153 -109 2262 100 0 3 chr3 205977859 205978158 -12059000 + AluSq SINE Alu 1 298 -15 266 314 63 43 chr3 205978161 205978404 -12058754 - L1ME3A LINE L1 -14 6951 6699 1551 199 45 3 chr3 205978404 205978691 -12058467 - AluSx SINE Alu -13 299 1 266 314 63 43 chr3 205978691 205978750 -12058408 - L1ME3A LINE L1 -266 6699 6643 5998 245 90 45 chr3 205978773 205979602 -12057556 - L1MCc LINE L1 -1096 5845 5055 360 0 0 0 chr3 205979602 205979642 -12057516 + (TA)n Simple_repeat Simple_repeat 1 40 0 1771 137 88 15 chr3 205979644 205979973 -12057185 + L1PB4 LINE L1 5794 6146 -10 5998 245 90 45 chr3 205979973 205983793 -12053365 - L1MCc LINE L1 -1886 5055 818 183 80 0 0 chr3 205984021 205984046 -12053112 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 6005 102 7 2 chr3 205984046 205985397 -12051761 - L1PA8 LINE L1 -24 6148 4795 1528 136 11 114 chr3 205985704 205986071 -12051087 + MER44D DNA MER2_type 9 607 -2 310 257 98 38 chr3 205986213 205986396 -12050762 - L1ME LINE L1 -349 5821 5628 357 24 0 0 chr3 205986709 205986751 -12050407 + (CA)n Simple_repeat Simple_repeat 2 43 0 346 233 0 6 chr3 205987033 205987115 -12050043 - MIR SINE MIR -57 151 71 952 90 0 15 chr3 205987207 205987340 -12049818 - L1MA2 LINE L1 -9 6295 6165 261 57 0 0 chr3 205988118 205988153 -12049005 + (TC)n Simple_repeat Simple_repeat 1 35 0 304 364 106 9 chr3 205988673 205988890 -12048268 - MIR SINE MIR -13 249 12 2018 142 0 7 chr3 205989145 205989433 -12047725 + AluSx SINE Alu 1 286 -26 297 140 0 0 chr3 205989433 205989490 -12047668 + (CA)n Simple_repeat Simple_repeat 1 57 0 541 239 40 55 chr3 205990234 205990435 -12046723 + MIR SINE MIR 65 262 0 2529 72 0 0 chr3 205991551 205991858 -12045300 - AluY SINE Alu -4 307 1 192 340 0 0 chr3 205992188 205992241 -12044917 + L2 LINE L2 3245 3297 -16 343 322 30 45 chr3 205994235 205994434 -12042724 + MIR SINE MIR 53 248 -14 364 314 179 52 chr3 205994514 205995146 -12042012 + L2 LINE L2 1071 1832 -1482 2972 115 7 2 chr3 205995146 205995589 -12041569 + L1PA14 LINE L1 5708 6152 -9 364 314 179 52 chr3 205995589 205995779 -12041379 + L2 LINE L2 1832 1997 -1317 2418 122 3 11 chr3 205995803 205996180 -12040978 - L1PB1 LINE L1 -2 6149 5776 320 87 43 43 chr3 205996181 205996296 -12040862 + (TA)n Simple_repeat Simple_repeat 2 116 0 1439 77 26 17 chr3 205996296 205996317 -12040841 - L1PB1 LINE L1 -350 5801 5782 279 54 0 0 chr3 205996317 205996354 -12040804 + (CA)n Simple_repeat Simple_repeat 2 38 0 1439 77 26 17 chr3 205996354 205996566 -12040592 - L1PB1 LINE L1 -369 5782 5566 218 304 149 7 chr3 205996597 205996745 -12040413 + L2 LINE L2 2071 2239 -1075 514 142 9 19 chr3 205996756 205996862 -12040296 - L1MC/D LINE L1 -865 5494 5390 2193 127 0 10 chr3 205996868 205997182 -12039976 + AluSx SINE Alu 1 311 -1 3641 189 19 48 chr3 205997193 205998082 -12039076 + L1MD2 LINE L1 5497 6359 0 33 25 0 0 chr3 205998122 205998162 -12038996 + AT_rich Low_complexity Low_complexity 1 40 0 201 74 0 0 chr3 205998192 205998219 -12038939 + (CA)n Simple_repeat Simple_repeat 2 28 0 928 342 82 16 chr3 205998251 205998888 -12038270 + L2 LINE L2 1833 2511 -803 1058 99 11 11 chr3 205999873 206000054 -12037104 + Tigger1 DNA MER2_type 2209 2389 -29 21 36 0 0 chr3 206000463 206000491 -12036667 + AT_rich Low_complexity Low_complexity 1 28 0 445 323 93 14 chr3 206000546 206000825 -12036333 + L1ME LINE L1 5338 5638 -483 233 128 21 0 chr3 206001086 206001133 -12036025 + (TG)n Simple_repeat Simple_repeat 2 49 0 2183 99 36 7 chr3 206001318 206001621 -12035537 + AluSx SINE Alu 1 312 0 391 259 116 7 chr3 206001937 206002084 -12035074 + Charlie8 DNA MER1_type 75 237 -2180 266 347 103 48 chr3 206002102 206002393 -12034765 - L2 LINE L2 -624 2690 2384 256 250 204 23 chr3 206002832 206002964 -12034194 - MER96 DNA MER1_type? 0 175 20 399 301 8 8 chr3 206003469 206003592 -12033566 - MIR3 SINE MIR -11 197 75 2409 88 0 0 chr3 206003597 206003891 -12033267 + AluSc SINE Alu 5 298 -11 529 194 137 14 chr3 206004125 206004264 -12032894 - MLT1J LTR MaLR -324 187 32 189 295 13 39 chr3 206004273 206004351 -12032807 - MIR SINE MIR -114 94 19 321 285 97 54 chr3 206004519 206004705 -12032453 + MIR SINE MIR 35 228 -34 285 273 33 46 chr3 206004911 206005045 -12032113 - MER5B DNA MER1_type -27 162 22 255 320 96 16 chr3 206005028 206005153 -12032005 - L2 LINE L2 -587 2727 2593 * 236 390 68 6 chr3 206005936 206006113 -12031045 - MIR3 SINE MIR -11 197 10 586 279 85 15 chr3 206006487 206006704 -12030454 + MIR SINE MIR 3 232 -30 386 23 0 0 chr3 206006893 206006937 -12030221 + (TG)n Simple_repeat Simple_repeat 2 45 0 1024 224 0 4 chr3 206007016 206007248 -12029910 - L1PA16 LINE L1 -4 6162 5932 327 65 0 0 chr3 206008132 206008178 -12028980 + (TG)n Simple_repeat Simple_repeat 2 47 0 676 215 19 38 chr3 206009113 206009271 -12027887 + MER5B DNA MER1_type 1 155 -23 215 264 38 19 chr3 206009466 206009572 -12027586 + (TA)n Simple_repeat Simple_repeat 2 109 0 325 277 31 46 chr3 206009599 206009729 -12027429 - L1ME4a LINE L1 -257 5864 5737 286 254 0 0 chr3 206010558 206010621 -12026537 + L2 LINE L2 3209 3271 -1 26 30 0 0 chr3 206011633 206011666 -12025492 + AT_rich Low_complexity Low_complexity 1 33 0 256 359 13 6 chr3 206011918 206012052 -12025106 + MIR SINE MIR 9 142 -66 1001 210 15 5 chr3 206012171 206012376 -12024782 - MER3 DNA MER1_type 0 209 3 219 69 0 0 chr3 206013106 206013135 -12024023 + (TC)n Simple_repeat Simple_repeat 1 29 0 423 0 0 0 chr3 206013135 206013182 -12023976 + (TG)n Simple_repeat Simple_repeat 2 48 0 244 25 75 0 chr3 206013614 206013654 -12023504 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 260 319 28 75 chr3 206014426 206014680 -12022478 + L2 LINE L2 2882 3123 -149 296 270 84 101 chr3 206014973 206015151 -12022007 - MIR3 SINE MIR -13 195 21 716 253 30 30 chr3 206015898 206016135 -12021023 - L2 LINE L2 0 3313 3077 459 249 34 93 chr3 206016132 206016188 -12020970 + MIR SINE MIR 13 71 -191 * 2346 85 3 31 chr3 206016188 206016506 -12020652 + AluSq SINE Alu 1 309 -4 459 249 34 93 chr3 206016506 206016654 -12020504 + MIR SINE MIR 71 205 -57 211 300 0 67 chr3 206017402 206017492 -12019666 - MIR SINE MIR -71 191 108 295 294 80 64 chr3 206017563 206017750 -12019408 + MIR SINE MIR 2 141 -67 789 181 0 15 chr3 206017756 206017889 -12019269 + FLAM_C SINE Alu 1 131 -2 21 0 0 0 chr3 206018168 206018189 -12018969 + AT_rich Low_complexity Low_complexity 1 21 0 2200 85 20 7 chr3 206018196 206018489 -12018669 + AluY SINE Alu 3 299 -12 380 299 11 0 chr3 206019571 206019658 -12017500 - MIR SINE MIR -101 107 20 2081 234 73 16 chr3 206019902 206020463 -12016695 + MLT1E LTR MaLR 1 593 0 391 369 8 0 chr3 206020493 206020615 -12016543 - L3 LINE CR1 -41 1536 1414 198 0 0 0 chr3 206022192 206022214 -12014944 + (T)n Simple_repeat Simple_repeat 1 22 0 381 285 29 36 chr3 206022460 206022597 -12014561 + L2 LINE L2 3137 3272 0 187 329 38 0 chr3 206022794 206022873 -12014285 - MIR SINE MIR -60 148 67 1195 105 11 63 chr3 206023043 206023233 -12013925 + AluSq SINE Alu 1 180 -133 1637 133 63 33 chr3 206023233 206023503 -12013655 + AluSx SINE Alu 23 300 -12 241 313 50 0 chr3 206024735 206024815 -12012343 - MIR3 SINE MIR -4 204 121 1950 96 4 0 chr3 206024997 206025290 -12011868 + AluSg SINE Alu 32 325 0 2925 73 15 13 chr3 206026491 206026889 -12010269 + L1PA8 LINE L1 5761 6159 -13 1884 96 0 27 chr3 206027493 206027745 -12009413 + AluSc SINE Alu 35 281 -28 204 67 0 0 chr3 206027745 206027775 -12009383 + (TTAAA)n Simple_repeat Simple_repeat 3 32 0 1173 217 4 8 chr3 206028369 206028604 -12008554 - AluJo SINE Alu -16 296 63 255 143 161 0 chr3 206028604 206028660 -12008498 - MIR SINE MIR -106 156 92 2011 94 0 0 chr3 206029256 206029510 -12007648 - AluSc SINE Alu -9 300 47 2199 127 15 33 chr3 206029636 206030460 -12006698 - L1M1 LINE L1 -716 5589 4091 233 191 32 0 chr3 206030493 206030573 -12006585 + (TTTA)n Simple_repeat Simple_repeat 1 82 0 747 212 159 36 chr3 206030624 206030982 -12006176 - L1ME2 LINE L1 -9 6155 5754 467 288 100 12 chr3 206031180 206031350 -12005808 + MIR3 SINE MIR 16 200 -8 2495 27 0 3 chr3 206031369 206031663 -12005495 + AluYa5 SINE Alu 1 293 -18 442 341 62 19 chr3 206032563 206032771 -12004387 + MIR SINE MIR 2 218 -44 228 267 35 23 chr3 206033562 206033648 -12003510 + MIR SINE MIR 23 109 -99 286 313 84 99 chr3 206033906 206034266 -12002892 - L2 LINE L2 -2 3270 2917 2416 103 0 0 chr3 206034266 206034578 -12002580 + AluSx SINE Alu 1 312 0 286 313 84 99 chr3 206034578 206034671 -12002487 - L2 LINE L2 -355 2917 2824 391 259 116 7 chr3 206034894 206035041 -12002117 + Charlie8 DNA MER1_type 75 237 -2180 266 347 103 48 chr3 206035059 206035350 -12001808 - L2 LINE L2 -624 2690 2384 256 250 204 23 chr3 206035789 206035921 -12001237 + MER96 DNA MER1_type? 1 156 -19 399 301 8 8 chr3 206036426 206036549 -12000609 - MIR3 SINE MIR -11 197 75 2409 88 0 0 chr3 206036554 206036848 -12000310 + AluSc SINE Alu 5 298 -11 529 194 137 14 chr3 206037082 206037221 -11999937 - MLT1J LTR MaLR -324 187 32 214 282 13 39 chr3 206037230 206037308 -11999850 - MIR SINE MIR -114 94 19 321 285 97 54 chr3 206037476 206037662 -11999496 + MIR SINE MIR 35 228 -34 285 273 33 46 chr3 206037868 206038002 -11999156 - MER5B DNA MER1_type -27 162 22 255 320 96 16 chr3 206037985 206038110 -11999048 - L2 LINE L2 -587 2727 2593 * 1210 289 127 57 chr3 206038343 206039112 -11998046 + L3 LINE CR1 754 1576 -1 189 331 33 66 chr3 206039487 206039608 -11997550 - L2 LINE L2 0 3313 3197 400 178 7 133 chr3 206039662 206039745 -11997413 - MLT1G1 LTR MaLR -30 537 476 2089 146 0 3 chr3 206039745 206040054 -11997104 + AluSx SINE Alu 1 308 -4 400 178 7 133 chr3 206040054 206040105 -11997053 - MLT1G1 LTR MaLR -91 476 420 434 269 191 42 chr3 206040209 206040260 -11996898 - MLT1G1 LTR MaLR -281 274 232 2301 175 8 5 chr3 206040260 206040655 -11996503 + MSTD LTR MaLR 1 396 0 434 269 191 42 chr3 206040655 206040725 -11996433 - MLT1G1 LTR MaLR -323 232 174 2071 106 3 26 chr3 206040725 206041027 -11996131 + AluSq SINE Alu 1 295 -18 434 269 191 42 chr3 206041027 206041193 -11995965 - MLT1G1 LTR MaLR -381 174 1 239 326 72 21 chr3 206041327 206041520 -11995638 - L2 LINE L2 -340 2974 2772 195 129 0 0 chr3 206041686 206041717 -11995441 + (T)n Simple_repeat Simple_repeat 1 31 0 331 257 158 79 chr3 206043144 206043409 -11993749 - L2 LINE L2 -8 3305 3020 378 244 24 57 chr3 206043467 206043590 -11993568 - L2 LINE L2 -1 3312 3194 370 287 104 30 chr3 206043612 206043776 -11993382 - MIR3 SINE MIR -31 177 2 231 276 29 57 chr3 206044445 206044550 -11992608 - MIR SINE MIR -73 189 88 247 337 45 65 chr3 206044912 206045111 -11992047 + MIR3 SINE MIR 11 205 -3 293 227 174 38 chr3 206045809 206045941 -11991217 - MIR SINE MIR -21 241 92 2428 91 3 0 chr3 206046672 206046979 -11990179 + AluSx SINE Alu 1 308 -4 221 329 13 13 chr3 206048551 206048630 -11988528 - L2 LINE L2 0 3313 3235 254 164 68 82 chr3 206048796 206048869 -11988289 + MIR SINE MIR 16 87 -121 214 342 37 58 chr3 206050283 206050473 -11986685 - L2 LINE L2 -219 3053 2868 379 160 21 11 chr3 206050576 206050670 -11986488 + GA-rich Low_complexity Low_complexity 2 96 0 241 325 77 17 chr3 206050895 206051012 -11986146 - L3 LINE CR1 -11 1566 1443 282 305 37 0 chr3 206051088 206051170 -11985988 - MIR SINE MIR -64 144 60 281 348 56 0 chr3 206051248 206051409 -11985749 + MIR3 SINE MIR 32 201 -7 300 334 77 37 chr3 206052208 206052507 -11984651 - L2 LINE L2 -1 3312 3002 870 203 116 34 chr3 206053499 206053706 -11983452 + MER58A DNA MER1_type 1 224 0 257 367 25 8 chr3 206053721 206053841 -11983317 + MIR SINE MIR 20 141 -67 281 263 189 57 chr3 206054332 206054507 -11982651 - L3 LINE CR1 -3 1574 1377 204 289 91 25 chr3 206054675 206054796 -11982362 - L3 LINE CR1 -213 1364 1236 305 206 118 52 chr3 206055047 206055183 -11981975 + L1MCa LINE L1 1923 2067 -4359 1962 150 3 0 chr3 206055221 206055507 -11981651 - AluSx SINE Alu -25 287 1 191 261 0 142 chr3 206056662 206056796 -11980362 - L2 LINE L2 -1 3312 3198 2206 109 0 0 chr3 206057135 206057455 -11979703 - AluSq SINE Alu 0 320 1 374 219 235 17 chr3 206057473 206057592 -11979566 - MER5A DNA MER1_type 0 189 45 183 379 0 0 chr3 206057830 206057888 -11979270 + L2 LINE L2 3001 3058 -214 231 289 0 0 chr3 206057974 206058050 -11979108 + L1MC4 LINE L1 6628 6703 -1339 534 267 27 7 chr3 206058360 206058506 -11978652 + MIR SINE MIR 108 256 -6 261 119 0 0 chr3 206059763 206059805 -11977353 + (TATATG)n Simple_repeat Simple_repeat 6 47 0 196 304 18 0 chr3 206060351 206060407 -11976751 - MIR3 SINE MIR -28 180 124 275 226 49 29 chr3 206063793 206063895 -11973263 - L1MC5 LINE L1 -13 7948 7845 1018 144 0 75 chr3 206065428 206065602 -11971556 + AluJo SINE Alu 1 161 -151 240 167 0 0 chr3 206066609 206066657 -11970501 + A-rich Low_complexity Low_complexity 1 48 0 265 188 24 12 chr3 206067100 206067185 -11969973 + CT-rich Low_complexity Low_complexity 4 89 0 2466 56 0 28 chr3 206067878 206068197 -11968961 - AluY SINE Alu 0 311 2 21 0 0 0 chr3 206068338 206068359 -11968799 + AT_rich Low_complexity Low_complexity 1 21 0 2134 47 0 36 chr3 206068752 206069026 -11968132 + AluY SINE Alu 37 300 -11 2146 93 7 10 chr3 206070607 206070907 -11966251 - AluSx SINE Alu -13 299 1 856 73 28 0 chr3 206070912 206071021 -11966137 - MER30 DNA MER1_type -116 114 3 709 301 43 35 chr3 206071815 206072071 -11965087 + MIR SINE MIR 5 262 0 1853 179 7 0 chr3 206072077 206072374 -11964784 - AluJb SINE Alu -13 299 1 242 278 168 31 chr3 206072436 206072627 -11964531 - MIR SINE MIR -18 244 28 6372 65 6 31 chr3 206074238 206075038 -11962120 - LTR17 LTR ERV1 0 780 1 413 296 115 24 chr3 206075919 206076172 -11960986 - L2 LINE L2 -13 3300 3025 212 196 131 93 chr3 206076358 206076465 -11960693 - L2 LINE L2 -9 3263 3153 291 301 61 71 chr3 206077243 206077439 -11959719 - MIR3 SINE MIR -5 203 10 2255 107 3 7 chr3 206077550 206077858 -11959300 - AluSq SINE Alu -3 310 4 709 154 8 0 chr3 206078065 206078182 -11958976 - L1M4 LINE L1 -3403 2743 2626 40 49 0 0 chr3 206078623 206078684 -11958474 + AT_rich Low_complexity Low_complexity 1 61 0 278 277 303 0 chr3 206079592 206079711 -11957447 - MIR SINE MIR 0 262 108 259 279 50 12 chr3 206079738 206079865 -11957293 + MIR SINE MIR 31 262 0 279 288 0 0 chr3 206079884 206079943 -11957215 - MIR SINE MIR -108 100 42 376 337 5 49 chr3 206080009 206080193 -11956965 + MIR3 SINE MIR 20 195 -13 359 277 80 58 chr3 206080833 206081021 -11956137 - L2 LINE L2 0 3313 3122 282 327 18 67 chr3 206081165 206081388 -11955770 + L2 LINE L2 2811 3022 -250 281 279 23 36 chr3 206081685 206081773 -11955385 + MIR SINE MIR 22 106 -109 191 343 14 0 chr3 206081804 206081874 -11955284 - MIR SINE MIR -41 221 151 340 156 47 0 chr3 206082013 206082077 -11955081 - MIR SINE MIR -102 160 94 294 323 24 48 chr3 206082760 206082884 -11954274 + MIR SINE MIR 25 145 -63 239 346 20 0 chr3 206083320 206083421 -11953737 + MIR SINE MIR 39 141 -67 205 225 0 42 chr3 206084045 206084116 -11953042 + C-rich Low_complexity Low_complexity 2 69 0 333 286 11 11 chr3 206084658 206084749 -11952409 + CT-rich Low_complexity Low_complexity 3 93 0 299 265 59 39 chr3 206084780 206084882 -11952276 + MIR SINE MIR 27 130 -78 404 237 85 34 chr3 206085950 206086068 -11951090 - MER94 DNA DNA -10 124 1 202 114 0 29 chr3 206086085 206086120 -11951038 + L2 LINE L2 3222 3255 -17 213 65 0 0 chr3 206086473 206086504 -11950654 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2270 92 11 0 chr3 206086507 206086791 -11950367 - AluSx SINE Alu -25 287 1 261 197 13 79 chr3 206087723 206087799 -11949359 + MIR3 SINE MIR 85 155 -53 2200 99 0 0 chr3 206088147 206088460 -11948698 + AluSq SINE Alu 1 313 0 378 299 11 0 chr3 206089706 206089793 -11947365 - MIR SINE MIR -101 107 20 2310 234 73 16 chr3 206090037 206090598 -11946560 + MLT1E LTR MaLR 1 593 0 388 369 8 0 chr3 206090628 206090750 -11946408 - L3 LINE CR1 -41 1536 1414 221 67 0 67 chr3 206092304 206092349 -11944809 + (T)n Simple_repeat Simple_repeat 1 42 0 371 285 29 36 chr3 206092595 206092732 -11944426 + L2 LINE L2 3137 3272 0 184 329 38 0 chr3 206092929 206093008 -11944150 - MIR SINE MIR -60 148 67 1192 105 11 63 chr3 206093178 206093368 -11943790 + AluSq SINE Alu 1 180 -133 1627 133 63 33 chr3 206093368 206093638 -11943520 + AluSx SINE Alu 23 300 -12 242 313 50 0 chr3 206094870 206094950 -11942208 - MIR3 SINE MIR -4 204 121 1955 96 4 0 chr3 206095132 206095425 -11941733 + AluSg SINE Alu 32 325 0 3121 84 0 22 chr3 206096625 206097041 -11940117 + L1PA8 LINE L1 5761 6167 -5 1882 96 0 27 chr3 206097627 206097879 -11939279 + AluSc SINE Alu 35 281 -28 204 67 0 0 chr3 206097879 206097909 -11939249 + (TTAAA)n Simple_repeat Simple_repeat 3 32 0 1140 217 4 8 chr3 206098503 206098738 -11938420 - AluJo SINE Alu -16 296 63 254 143 161 0 chr3 206098738 206098794 -11938364 - MIR SINE MIR -106 156 92 2007 94 0 0 chr3 206099390 206099644 -11937514 - AluSc SINE Alu -9 300 47 2496 126 12 33 chr3 206099768 206100597 -11936561 - L1M1 LINE L1 -716 5589 4091 233 191 32 0 chr3 206100630 206100710 -11936448 + (TTTA)n Simple_repeat Simple_repeat 1 82 0 747 212 159 36 chr3 206100761 206101119 -11936039 - L1ME2 LINE L1 -9 6155 5754 467 288 100 12 chr3 206101317 206101487 -11935671 + MIR3 SINE MIR 16 200 -8 2505 34 0 0 chr3 206101506 206101800 -11935358 + AluYa5 SINE Alu 1 294 -17 186 122 20 122 chr3 206102074 206102123 -11935035 - MIR3 SINE MIR -9 199 156 445 342 67 76 chr3 206102505 206102955 -11934203 + L2 LINE L2 2825 3270 -2 1952 152 3 0 chr3 206104152 206104449 -11932709 - AluSx SINE Alu -14 298 1 210 229 12 108 chr3 206104713 206104796 -11932362 - L2 LINE L2 -50 3222 3148 547 271 0 30 chr3 206105123 206105256 -11931902 + MER5B DNA MER1_type 1 129 -49 185 358 111 22 chr3 206105537 206105763 -11931395 + L3 LINE CR1 1317 1562 -15 2288 104 3 0 chr3 206105823 206106131 -11931027 + AluSc SINE Alu 1 309 0 526 297 104 53 chr3 206106238 206106652 -11930506 - MLT1J2 LTR MaLR -13 437 3 309 51 0 0 chr3 206106657 206106696 -11930462 + (CAT)n Simple_repeat Simple_repeat 3 41 0 438 314 197 16 chr3 206106948 206107358 -11929800 - L2 LINE L2 0 3272 2771 315 71 0 0 chr3 206108083 206108125 -11929033 + (TCC)n Simple_repeat Simple_repeat 3 44 0 212 330 92 25 chr3 206108467 206108706 -11928452 + L2 LINE L2 2830 3084 -188 221 235 74 49 chr3 206108894 206108975 -11928183 + MIR SINE MIR 70 152 -110 248 289 91 41 chr3 206109178 206109299 -11927859 - MIR SINE MIR -118 144 18 401 277 28 45 chr3 206109420 206109597 -11927561 - L3 LINE CR1 -318 1259 1086 521 304 72 46 chr3 206110951 206111210 -11925948 - L1MC4a LINE L1 -1883 5925 5674 2555 60 0 0 chr3 206111210 206111512 -11925646 - AluY SINE Alu -9 302 1 521 304 72 46 chr3 206111512 206111791 -11925367 - L1MC4a LINE L1 -2134 5674 5373 183 100 0 0 chr3 206111827 206111857 -11925301 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 21 57 0 0 chr3 206112425 206112460 -11924698 + AT_rich Low_complexity Low_complexity 1 35 0 242 253 11 58 chr3 206112587 206112674 -11924484 - MIR3 SINE MIR -120 88 6 * 274 226 43 21 chr3 206112656 206112749 -11924409 + MIR SINE MIR 59 153 -109 2113 120 0 7 chr3 206113468 206113768 -11923390 + AluSq SINE Alu 1 298 -15 266 314 63 43 chr3 206113771 206114014 -11923144 - L1ME3A LINE L1 -14 6156 5904 1551 199 45 3 chr3 206114014 206114301 -11922857 - AluSx SINE Alu -13 299 1 266 314 63 43 chr3 206114301 206114360 -11922798 - L1ME3A LINE L1 -266 5904 5848 1749 224 67 38 chr3 206114383 206115157 -11922001 - L1MC4a LINE L1 -1096 5050 4254 360 0 0 0 chr3 206115212 206115252 -11921906 + (TA)n Simple_repeat Simple_repeat 1 40 0 1181 158 111 16 chr3 206115254 206115507 -11921651 + L1PB4 LINE L1 5794 6070 -86 2211 98 7 3 chr3 206116206 206116491 -11920667 + AluSq SINE Alu 1 286 -27 1753 161 4 11 chr3 206118764 206119044 -11918114 + AluJo SINE Alu 6 283 -29 346 140 0 0 chr3 206119044 206119101 -11918057 + AluJ/FRAM SINE Alu 225 281 -21 416 131 0 0 chr3 206119101 206119162 -11917996 + AluJ/FRAM SINE Alu 223 283 -29 * 458 134 0 0 chr3 206119160 206119227 -11917931 + AluJ/FRAM SINE Alu 223 289 -23 2334 106 43 3 chr3 206120862 206121212 -11915946 - THE1B LTR MaLR 0 364 1 261 119 0 0 chr3 206122428 206122470 -11914688 + (TATATG)n Simple_repeat Simple_repeat 6 47 0 191 304 18 0 chr3 206123016 206123072 -11914086 - MIR3 SINE MIR -28 180 124 182 396 44 0 chr3 206123408 206123499 -11913659 + MIR SINE MIR 40 134 -74 233 226 49 29 chr3 206126458 206126560 -11910598 - L1MC5 LINE L1 -13 7948 7845 1029 144 0 75 chr3 206128093 206128267 -11908891 + AluJo SINE Alu 1 161 -151 240 167 0 0 chr3 206129274 206129322 -11907836 + A-rich Low_complexity Low_complexity 1 48 0 265 188 24 12 chr3 206129765 206129850 -11907308 + CT-rich Low_complexity Low_complexity 4 89 0 2554 58 0 3 chr3 206130548 206130859 -11906299 - AluY SINE Alu 0 311 2 21 0 0 0 chr3 206131000 206131021 -11906137 + AT_rich Low_complexity Low_complexity 1 21 0 2115 47 0 36 chr3 206131414 206131688 -11905470 + AluY SINE Alu 37 300 -11 2057 39 47 8 chr3 206133269 206133524 -11903634 - AluY SINE Alu -13 298 34 198 368 0 0 chr3 206133526 206133594 -11903564 - L3 LINE CR1 -105 1472 1405 2414 56 3 13 chr3 206133980 206134284 -11902874 + AluSc SINE Alu 1 301 -8 389 206 20 110 chr3 206134691 206134837 -11902321 - MIR SINE MIR -108 154 22 3851 17 0 0 chr3 206136025 206136488 -11900670 - L1PA3 LINE L1 -357 5798 5336 3023 34 0 0 chr3 206136488 206136842 -11900316 + L1PA3 LINE L1 5798 6152 -3 393 22 0 0 chr3 206137250 206137296 -11899862 + (CA)n Simple_repeat Simple_repeat 2 47 0 206 340 72 31 chr3 206141606 206141703 -11895455 - L2 LINE L2 -49 3223 3123 581 273 68 19 chr3 206142388 206142549 -11894609 - MIR3 SINE MIR -15 193 25 2208 105 3 0 chr3 206143073 206143368 -11893790 - AluSq SINE Alu -17 296 1 351 319 91 50 chr3 206143373 206143557 -11893601 + L1ME3A LINE L1 2513 2688 -3458 440 52 39 13 chr3 206143557 206143634 -11893524 + (TA)n Simple_repeat Simple_repeat 2 80 0 351 319 91 50 chr3 206143634 206143832 -11893326 + L1ME3A LINE L1 2688 2911 -3235 453 258 130 27 chr3 206143838 206144361 -11892797 + L1ME3A LINE L1 2932 3508 -2638 483 221 37 61 chr3 206144366 206144529 -11892629 + L1ME3A LINE L1 5997 6155 -15 1517 133 4 4 chr3 206144819 206145052 -11892106 + AluSq SINE Alu 1 233 -80 2133 117 0 0 chr3 206145090 206145371 -11891787 + AluSx SINE Alu 1 281 -31 23 92 0 0 chr3 206145411 206145476 -11891682 + AT_rich Low_complexity Low_complexity 1 65 0 266 277 79 90 chr3 206145484 206145661 -11891497 + L1ME3A LINE L1 3969 4143 -2003 26 50 0 0 chr3 206145663 206145703 -11891455 + AT_rich Low_complexity Low_complexity 1 40 0 2201 107 7 0 chr3 206145803 206146103 -11891055 + AluSq SINE Alu 3 304 -9 413 300 100 7 chr3 206146220 206146510 -11890648 + L1ME3A LINE L1 4465 4781 -1365 2196 99 3 10 chr3 206146718 206147021 -11890137 - AluSx SINE Alu -11 301 1 845 290 109 32 chr3 206147025 206147350 -11889808 + L1ME3A LINE L1 5083 5381 -789 1950 87 11 14 chr3 206147350 206147626 -11889532 - AluSc SINE Alu -6 303 29 845 290 109 32 chr3 206147626 206148103 -11889055 + L1ME3A LINE L1 5381 5952 -218 28 71 0 0 chr3 206148246 206148302 -11888856 + AT_rich Low_complexity Low_complexity 1 56 0 1903 142 0 0 chr3 206148396 206148671 -11888487 - AluSx SINE Alu -21 291 17 2780 184 44 45 chr3 206149950 206150612 -11886546 + MER67B LTR ERV1 1 661 0 472 144 52 0 chr3 206153181 206153278 -11883880 + L1MA7 LINE L1 6189 6290 -1 561 241 55 109 chr3 206153288 206153378 -11883780 - L1ME4a LINE L1 -11 6110 6017 982 217 24 5 chr3 206153378 206153590 -11883568 - MER20 DNA MER1_type -2 217 2 561 241 55 109 chr3 206153590 206153685 -11883473 - L1ME4a LINE L1 -104 6017 5918 2343 91 7 3 chr3 206153685 206153992 -11883166 - AluSq SINE Alu -5 308 1 561 241 55 109 chr3 206153992 206154208 -11882950 - L1ME4a LINE L1 -203 5918 5730 321 303 35 14 chr3 206155007 206155152 -11882006 - L1ME4a LINE L1 -398 5723 5576 2103 139 7 0 chr3 206155372 206155673 -11881485 - AluSg SINE Alu -7 303 1 270 269 92 17 chr3 206155803 206155858 -11881300 + L2 LINE L2 2914 2963 -309 2022 102 31 20 chr3 206155858 206156151 -11881007 - AluSx SINE Alu -12 300 5 270 269 92 17 chr3 206156151 206156214 -11880944 + L2 LINE L2 2963 3041 -231 342 199 7 154 chr3 206156387 206156523 -11880635 + MER102b DNA MER1_type 214 329 -12 1686 166 128 102 chr3 206157963 206158385 -11878773 - MLT2B2 LTR ERVL 0 520 88 741 205 107 118 chr3 206158385 206158732 -11878426 - MLT1A1 LTR MaLR 0 365 23 664 104 0 96 chr3 206158733 206158848 -11878310 - MLT2B2 LTR ERVL -416 104 1 341 308 30 15 chr3 206159889 206160022 -11877136 + MIR3 SINE MIR 36 170 -38 316 356 30 8 chr3 206160062 206160194 -11876964 - L2 LINE L2 0 3272 3138 2332 100 7 0 chr3 206160318 206160627 -11876531 - AluSp SINE Alu -2 311 1 243 277 0 109 chr3 206160838 206160957 -11876201 + L2 LINE L2 3208 3313 0 228 263 79 13 chr3 206160980 206161056 -11876102 - MIR SINE MIR -133 129 49 2124 114 0 49 chr3 206161094 206161419 -11875739 + AluSx SINE Alu 1 309 -3 213 39 0 0 chr3 206162316 206162342 -11874816 + (TC)n Simple_repeat Simple_repeat 1 26 0 2552 140 39 2 chr3 206163075 206163488 -11873670 - MSTA LTR MaLR 0 428 1 22 0 0 0 chr3 206163518 206163540 -11873618 + AT_rich Low_complexity Low_complexity 1 22 0 415 113 0 19 chr3 206163666 206163740 -11873418 - L1M3 LINE L1 -694 5467 5415 2649 139 14 0 chr3 206163740 206164157 -11873001 + L1PA16 LINE L1 5742 6165 -1 242 196 52 10 chr3 206164200 206164297 -11872861 + (TA)n Simple_repeat Simple_repeat 1 101 0 1923 168 0 0 chr3 206164484 206164782 -11872376 + AluJo SINE Alu 1 298 -14 230 215 0 77 chr3 206164847 206164912 -11872246 + MIR SINE MIR 91 150 -112 294 171 0 0 chr3 206166031 206166072 -11871086 + AluJb SINE Alu 1 41 -258 6175 97 11 3 chr3 206166089 206166942 -11870216 - L1PA13 LINE L1 0 6163 5305 1510 156 3 98 chr3 206166942 206167249 -11869909 + AluJb SINE Alu 26 303 -9 604 301 80 33 chr3 206167600 206167899 -11869259 - L3 LINE CR1 -3 1574 1262 201 122 24 24 chr3 206169035 206169076 -11868082 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 2146 130 31 8 chr3 206169217 206169400 -11867758 - MER46B DNA MER2_type -2495 236 165 327 49 0 0 chr3 206169400 206169441 -11867717 + (TG)n Simple_repeat Simple_repeat 2 42 0 2146 130 31 8 chr3 206169441 206169610 -11867548 - MER46B DNA MER2_type -2566 165 1 1990 175 94 35 chr3 206169726 206170339 -11866819 - MER39 LTR ERV1 0 707 1 325 71 0 0 chr3 206170689 206170731 -11866427 - 5S rRNA rRNA -79 42 1 2405 148 67 3 chr3 206170762 206171153 -11866005 + MSTB LTR MaLR 1 416 -10 245 248 64 28 chr3 206171870 206171979 -11865179 + MIR3 SINE MIR 93 205 -3 501 296 38 5 chr3 206172172 206172358 -11864800 + MIR SINE MIR 1 192 -70 541 255 144 37 chr3 206172598 206172896 -11864262 - L2 LINE L2 -9 3304 2975 28 0 0 0 chr3 206172958 206172986 -11864172 + AT_rich Low_complexity Low_complexity 1 28 0 2028 135 0 3 chr3 206172991 206173280 -11863878 - AluSx SINE Alu -24 288 1 1463 175 31 45 chr3 206173657 206173949 -11863209 + AluJo SINE Alu 9 296 -16 285 340 34 92 chr3 206173995 206174289 -11862869 - L2 LINE L2 -1 3271 2995 257 211 39 58 chr3 206174764 206174868 -11862290 + L2 LINE L2 2286 2387 -927 216 322 35 9 chr3 206175408 206175523 -11861635 + MIR SINE MIR 24 141 -67 222 348 64 39 chr3 206176452 206176734 -11860424 + L2 LINE L2 2636 2924 -390 271 289 172 16 chr3 206177104 206177232 -11859926 - MIR3 SINE MIR -57 151 4 234 0 0 0 chr3 206177292 206177318 -11859840 + (TG)n Simple_repeat Simple_repeat 2 27 0 196 265 15 29 chr3 206178041 206178109 -11859049 - MIR3 SINE MIR -2 206 140 240 244 0 70 chr3 206178111 206178197 -11858961 + CT-rich Low_complexity Low_complexity 4 83 0 265 334 38 10 chr3 206178397 206178502 -11858656 - MIR3 SINE MIR -53 155 47 2465 74 7 0 chr3 206179149 206179447 -11857711 + AluY SINE Alu 1 300 -11 1515 126 102 49 chr3 206179459 206179744 -11857414 + AluJo SINE Alu 1 300 -12 290 256 67 0 chr3 206181445 206181535 -11855623 + MIR SINE MIR 82 177 -85 257 180 0 16 chr3 206182948 206183009 -11854149 + (TTA)n Simple_repeat Simple_repeat 2 61 0 307 194 0 56 chr3 206183018 206183090 -11854068 - L2 LINE L2 0 3313 3246 2030 144 16 0 chr3 206183203 206183509 -11853649 - AluSx SINE Alu -1 311 1 2167 73 0 4 chr3 206183520 206183792 -11853366 - AluY SINE Alu -4 307 37 216 291 125 40 chr3 206184145 206184343 -11852815 + MIR3 SINE MIR 1 211 -51 1505 133 13 4 chr3 206184975 206185086 -11852072 - MER30 DNA MER1_type 0 230 121 2340 92 3 3 chr3 206185086 206185380 -11851778 - AluSq SINE Alu -19 294 1 1505 133 13 4 chr3 206185380 206185494 -11851664 - MER30 DNA MER1_type -109 121 3 588 285 51 43 chr3 206186288 206186544 -11850614 + MIR SINE MIR 5 262 0 1868 179 7 0 chr3 206186550 206186847 -11850311 - AluJb SINE Alu -13 299 1 190 286 101 36 chr3 206186932 206187100 -11850058 - MIR SINE MIR -56 206 28 6072 65 6 28 chr3 206188710 206189507 -11847651 - LTR17 LTR ERV1 0 780 1 349 296 115 24 chr3 206190388 206190641 -11846517 - L2 LINE L2 -13 3300 3025 226 326 51 61 chr3 206191712 206191908 -11845250 - MIR3 SINE MIR -5 203 10 2270 107 3 7 chr3 206192019 206192327 -11844831 - AluSq SINE Alu -3 310 4 706 154 8 0 chr3 206192534 206192651 -11844507 - L1M4 LINE L1 -3403 2743 2626 40 49 0 0 chr3 206193091 206193152 -11844006 + AT_rich Low_complexity Low_complexity 1 61 0 244 277 303 0 chr3 206194060 206194179 -11842979 - MIR SINE MIR 0 262 108 235 279 50 12 chr3 206194206 206194333 -11842825 + MIR SINE MIR 31 262 0 261 271 0 0 chr3 206194352 206194411 -11842747 - MIR SINE MIR -108 100 42 328 326 0 37 chr3 206194526 206194661 -11842497 + MIR3 SINE MIR 66 195 -13 314 277 80 58 chr3 206195301 206195489 -11841669 - L2 LINE L2 0 3313 3122 279 316 0 70 chr3 206195669 206195856 -11841302 + L2 LINE L2 2849 3022 -250 261 279 23 36 chr3 206196153 206196241 -11840917 + MIR SINE MIR 22 106 -109 319 175 0 0 chr3 206196488 206196545 -11840613 - MIR SINE MIR -112 150 94 261 299 9 56 chr3 206197245 206197352 -11839806 + MIR SINE MIR 44 145 -63 212 346 20 0 chr3 206197788 206197889 -11839269 + MIR SINE MIR 39 141 -67 205 225 0 42 chr3 206198513 206198584 -11838574 + C-rich Low_complexity Low_complexity 2 69 0 333 286 11 11 chr3 206199126 206199217 -11837941 + CT-rich Low_complexity Low_complexity 3 93 0 266 265 59 39 chr3 206199248 206199350 -11837808 + MIR SINE MIR 27 130 -78 397 237 85 34 chr3 206200418 206200536 -11836622 - MER94 DNA DNA -10 124 1 189 114 0 29 chr3 206200553 206200588 -11836570 + L2 LINE L2 3222 3255 -17 213 65 0 0 chr3 206200941 206200972 -11836186 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2293 92 11 0 chr3 206200975 206201259 -11835899 - AluSx SINE Alu -25 287 1 262 197 13 79 chr3 206202191 206202267 -11834891 + MIR3 SINE MIR 85 155 -53 2191 99 0 0 chr3 206202615 206202928 -11834230 + AluSq SINE Alu 1 313 0 225 94 0 0 chr3 206203364 206203396 -11833762 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 441 346 22 27 chr3 206204170 206204355 -11832803 - MIR3 SINE MIR -4 204 21 180 0 0 0 chr3 206204356 206204376 -11832782 + (T)n Simple_repeat Simple_repeat 1 20 0 2047 149 24 3 chr3 206204508 206204844 -11832314 + MER2 DNA MER2_type 2 344 0 329 328 92 40 chr3 206206258 206206432 -11830726 - MIR3 SINE MIR -23 185 3 211 250 120 76 chr3 206207046 206207138 -11830020 + MIR SINE MIR 12 107 -155 319 325 60 6 chr3 206207220 206207386 -11829772 + L3b LINE CR1 1219 1393 -190 189 371 45 8 chr3 206207637 206207769 -11829389 - MIR3 SINE MIR -24 184 48 22 0 0 0 chr3 206208161 206208183 -11828975 + AT_rich Low_complexity Low_complexity 1 22 0 307 245 0 23 chr3 206209077 206209168 -11827990 + L1ME LINE L1 5674 5764 -357 574 259 103 0 chr3 206209803 206209977 -11827181 + MIR SINE MIR 68 259 -3 27 0 0 0 chr3 206210449 206210476 -11826682 + AT_rich Low_complexity Low_complexity 1 27 0 883 263 52 22 chr3 206210480 206210712 -11826446 - MIR SINE MIR -16 246 8 291 276 0 0 chr3 206210801 206210877 -11826281 + (CAATT)n Simple_repeat Simple_repeat 3 78 0 370 246 8 8 chr3 206212262 206212388 -11824770 + CT-rich Low_complexity Low_complexity 4 129 0 583 296 100 69 chr3 206212418 206212779 -11824379 - L2 LINE L2 -1 3271 2900 202 259 62 25 chr3 206212775 206212856 -11824302 - L2 LINE L2 -548 2766 2683 * 427 277 27 38 chr3 206214123 206214309 -11822849 + MIR SINE MIR 22 205 -57 217 274 41 41 chr3 206214544 206214617 -11822541 + L2 LINE L2 3116 3188 -84 631 306 57 20 chr3 206214623 206214871 -11822287 + MIR SINE MIR 3 259 -3 456 333 11 17 chr3 206215196 206215370 -11821788 - MIR SINE MIR -70 192 20 13977 32 3 1 chr3 206216613 206218373 -11818785 - L1PA4 LINE L1 -1012 5134 3371 7632 20 9 0 chr3 206218373 206219389 -11817769 + L1PA4 LINE L1 5132 6155 0 327 353 72 0 chr3 206219964 206220103 -11817055 + MIR SINE MIR 53 201 -61 21 36 0 0 chr3 206220127 206220155 -11817003 + AT_rich Low_complexity Low_complexity 1 28 0 251 247 56 0 chr3 206220172 206220261 -11816897 - MLT1K LTR MaLR 0 588 495 6803 69 7 5 chr3 206220454 206222200 -11814958 - L1PA7 LINE L1 0 6154 4424 543 369 42 21 chr3 206222221 206222552 -11814606 - MLT1K LTR MaLR -242 346 9 211 317 12 12 chr3 206223633 206223715 -11813443 - L2 LINE L2 -181 3091 3010 407 331 48 24 chr3 206224561 206224762 -11812396 + MIR SINE MIR 8 214 -48 220 318 38 23 chr3 206225536 206225668 -11811490 + MIR SINE MIR 110 243 -19 210 292 28 14 chr3 206225744 206225816 -11811342 - L3 LINE CR1 -174 1403 1331 329 293 9 69 chr3 206227609 206227725 -11809433 - L2 LINE L2 -2 3270 3162 188 302 0 0 chr3 206227856 206227909 -11809249 + L2 LINE L2 2711 2763 -551 225 218 109 0 chr3 206230804 206230859 -11806299 + L2 LINE L2 3212 3272 0 375 288 187 19 chr3 206231050 206231307 -11805851 - MLT1L LTR MaLR -5 610 311 1873 180 26 11 chr3 206231410 206231788 -11805370 - MLT1B LTR MaLR 0 390 7 1976 101 36 7 chr3 206232263 206232541 -11804617 - AluSx SINE Alu -26 286 1 2080 115 0 34 chr3 206233283 206233616 -11803542 - AluSx SINE Alu 0 323 1 3789 212 37 16 chr3 206233618 206234128 -11803030 - L1MD1 LINE L1 -19 6617 6119 2061 204 49 5 chr3 206234128 206234575 -11802583 + MLT1C LTR MaLR 1 467 0 3789 212 37 16 chr3 206234575 206235496 -11801662 - L1MD1 LINE L1 -517 6119 5087 7339 215 73 41 chr3 206235520 206235849 -11801309 - L1MD1 LINE L1 -3950 2590 2273 2125 75 4 0 chr3 206235849 206236145 -11801013 - AluY SINE Alu 0 311 15 7339 215 73 41 chr3 206236145 206237629 -11799529 - L1MD1 LINE L1 -4267 2273 673 201 74 0 0 chr3 206237629 206237656 -11799502 + (TGG)n Simple_repeat Simple_repeat 1 27 0 7339 215 73 41 chr3 206237656 206238318 -11798840 - L1MD1 LINE L1 -5867 673 34 342 231 195 20 chr3 206238342 206238456 -11798702 - L1MC4 LINE L1 -3 8039 7946 194 62 31 0 chr3 206238456 206238488 -11798670 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 342 231 195 20 chr3 206238488 206238568 -11798590 - L1MC4 LINE L1 -96 7946 7811 2224 124 0 6 chr3 206238568 206238882 -11798276 + AluSx SINE Alu 1 312 0 359 183 12 0 chr3 206239730 206239812 -11797346 + (CATA)n Simple_repeat Simple_repeat 1 83 0 458 238 42 7 chr3 206240846 206240989 -11796169 - L1MC4 LINE L1 -215 7827 7680 2007 73 0 11 chr3 206241785 206242045 -11795113 - AluY SINE Alu -19 292 36 315 186 0 0 chr3 206242376 206242435 -11794723 - MLT1I LTR MaLR 0 409 351 1663 204 7 3 chr3 206242440 206242729 -11794429 - AluJb SINE Alu -22 290 1 252 0 0 0 chr3 206242737 206242765 -11794393 + (T)n Simple_repeat Simple_repeat 1 28 0 395 171 77 43 chr3 206242962 206243079 -11794079 - MLT1I LTR MaLR -270 139 19 776 309 35 67 chr3 206244677 206245110 -11792048 + L3 LINE CR1 1082 1500 -77 335 301 43 11 chr3 206245308 206245494 -11791664 - HAL1 LINE L1 -352 2155 1964 213 322 0 22 chr3 206245786 206245876 -11791282 + CT-rich Low_complexity Low_complexity 3 90 0 429 301 127 45 chr3 206246133 206246558 -11790600 + L1M4 LINE L1 4901 5360 -786 649 278 105 46 chr3 206246564 206247172 -11789986 + HAL1 LINE L1 857 1500 -1007 2129 127 13 3 chr3 206247404 206247711 -11789447 - AluSg SINE Alu 0 310 1 504 292 0 0 chr3 206248040 206248153 -11789005 + MER81 DNA DNA 1 113 -1 225 0 0 0 chr3 206248515 206248540 -11788618 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 714 339 131 13 chr3 206248552 206249106 -11788052 - L2 LINE L2 0 3313 2688 2681 137 34 0 chr3 206249113 206249589 -11787569 + L1MA4 LINE L1 5752 6243 -57 571 277 31 22 chr3 206249601 206249825 -11787333 - L2 LINE L2 -619 2695 2470 731 246 90 9 chr3 206249992 206250203 -11786955 + MIR SINE MIR 1 228 -34 422 232 66 96 chr3 206250232 206250534 -11786624 - L1ME LINE L1 -302 5819 5527 330 339 42 0 chr3 206251119 206251237 -11785921 - L1ME LINE L1 -1282 4864 4742 1737 169 54 0 chr3 206251285 206251564 -11785594 - AluJo SINE Alu -18 294 1 209 33 33 0 chr3 206251784 206251814 -11785344 + (CAA)n Simple_repeat Simple_repeat 3 33 0 1718 162 54 29 chr3 206251845 206252196 -11784962 - MLT1A1 LTR MaLR 0 365 6 185 310 85 54 chr3 206252516 206252645 -11784513 - MIR3 SINE MIR -65 143 11 316 214 24 48 chr3 206253446 206253530 -11783628 + MIR SINE MIR 179 260 -2 454 315 73 6 chr3 206253909 206254074 -11783084 - L3 LINE CR1 -154 1423 1248 585 68 23 0 chr3 206254719 206254807 -11782351 + L1PA15 LINE L1 6071 6160 -5 23 0 0 0 chr3 206255373 206255396 -11781762 + AT_rich Low_complexity Low_complexity 1 23 0 610 73 10 10 chr3 206255396 206255492 -11781666 - L1MA1 LINE L1 0 6302 6207 1179 72 11 33 chr3 206255492 206255673 -11781485 + L1MA1 LINE L1 5852 6028 -274 225 346 60 30 chr3 206255734 206255867 -11781291 + L2 LINE L2 3134 3270 -2 25 0 0 0 chr3 206256353 206256378 -11780780 + AT_rich Low_complexity Low_complexity 1 25 0 184 283 142 18 chr3 206256528 206256641 -11780517 - MIR SINE MIR -15 247 121 699 198 175 0 chr3 206257289 206257466 -11779692 + MER58A DNA MER1_type 1 208 -16 7883 16 0 0 chr3 206257471 206258590 -11778568 + L1PA2 LINE L1 5036 6154 -1 617 272 12 0 chr3 206258830 206259003 -11778155 + MER5B DNA MER1_type 1 175 -3 21 0 0 0 chr3 206260222 206260243 -11776915 + AT_rich Low_complexity Low_complexity 1 21 0 9683 179 16 23 chr3 206260303 206260314 -11776844 - L1PA12 LINE L1 -2526 5058 5048 9189 143 22 7 chr3 206260314 206261919 -11775239 - L1PA11 LINE L1 0 6174 4510 2078 143 22 25 chr3 206261919 206262284 -11774874 - THE1B LTR MaLR 0 364 1 9189 143 22 7 chr3 206262284 206263068 -11774090 - L1PA11 LINE L1 -1664 4510 3739 9683 179 16 23 chr3 206263068 206265049 -11772109 - L1PA12 LINE L1 -2536 5048 3054 1653 177 127 16 chr3 206265049 206265434 -11771724 + MSTA LTR MaLR 1 428 0 9324 143 4 48 chr3 206265436 206267086 -11770072 + MSTA-int LTR MaLR 3 1579 -1 1924 158 119 13 chr3 206267087 206267474 -11769684 + MSTA LTR MaLR 1 428 0 9683 179 16 23 chr3 206267474 206267739 -11769419 - L1PA12 LINE L1 -4530 3054 2803 21 0 0 0 chr3 206267739 206267760 -11769398 + AT_rich Low_complexity Low_complexity 1 21 0 40837 34 22 1 chr3 206267760 206273784 -11763374 - L1PA3 LINE L1 0 6155 2 6476 243 33 23 chr3 206273787 206276068 -11761090 - L1PA12 LINE L1 -4748 2836 1 1219 169 77 109 chr3 206276594 206276997 -11760161 - MLT1B LTR MaLR 0 390 1 209 315 69 69 chr3 206277111 206277399 -11759759 - L2 LINE L2 -403 2911 2624 409 356 93 14 chr3 206277399 206277615 -11759543 + MIR SINE MIR 2 234 -28 195 175 88 53 chr3 206278481 206278538 -11758620 - L2 LINE L2 0 3313 3255 220 204 0 37 chr3 206278568 206278622 -11758536 - L2 LINE L2 0 3313 3262 288 272 215 6 chr3 206278650 206278808 -11758350 - MIR3 SINE MIR -8 200 10 2210 181 17 5 chr3 206280161 206280576 -11756582 + MSTB LTR MaLR 1 420 -6 227 325 123 9 chr3 206280674 206280788 -11756370 + MIR3 SINE MIR 36 162 -46 758 232 11 39 chr3 206281297 206281478 -11755680 - MIR SINE MIR -66 196 21 2130 85 9 66 chr3 206281521 206281839 -11755319 + AluSx SINE Alu 1 300 -12 232 378 0 0 chr3 206282129 206282211 -11754947 - L2 LINE L2 -6 3266 3185 24 0 0 0 chr3 206282408 206282432 -11754726 + AT_rich Low_complexity Low_complexity 1 24 0 1903 207 96 13 chr3 206282530 206282989 -11754169 + MLT1D LTR MaLR 1 497 -8 3259 29 3 0 chr3 206283128 206283514 -11753644 - L1PA3 LINE L1 0 6155 5769 627 248 73 57 chr3 206283549 206283795 -11753363 - MLT1J LTR MaLR -250 261 12 1622 202 27 7 chr3 206283807 206284104 -11753054 - AluJb SINE Alu -9 303 1 2272 83 17 0 chr3 206284118 206284406 -11752752 - AluY SINE Alu -18 293 1 445 325 21 53 chr3 206284680 206284963 -11752195 + L1MEc LINE L1 2183 2456 -3940 5325 124 30 19 chr3 206285286 206286973 -11750185 + L1PA16 LINE L1 4459 6159 -7 514 287 47 107 chr3 206287068 206287647 -11749511 + L1MEc LINE L1 3145 3688 -2527 225 331 36 27 chr3 206287721 206288053 -11749105 + L1MEc LINE L1 3759 4093 -2122 316 266 9 0 chr3 206288451 206288564 -11748594 + L1MEc LINE L1 4559 4672 -1543 773 305 51 12 chr3 206289027 206289628 -11747530 + L1MEc LINE L1 5081 5702 -531 182 313 98 67 chr3 206290393 206290617 -11746541 - L3 LINE CR1 -3 1574 1344 480 280 17 8 chr3 206291874 206291992 -11745166 + MIR SINE MIR 3 121 -141 185 362 112 0 chr3 206293078 206293194 -11743964 - MIR3 SINE MIR -72 136 8 253 343 0 19 chr3 206293340 206293445 -11743713 - MIR SINE MIR -62 146 44 364 320 17 47 chr3 206293855 206294027 -11743131 + MIR3 SINE MIR 31 197 -11 203 371 0 0 chr3 206294557 206294619 -11742539 + L2 LINE L2 3211 3272 0 2347 101 0 0 chr3 206294803 206295101 -11742057 + AluSq SINE Alu 1 298 -15 198 282 70 28 chr3 206295307 206295378 -11741780 - L2 LINE L2 -529 2785 2712 338 346 39 8 chr3 206295972 206296102 -11741056 + MIR SINE MIR 13 146 -116 191 35 0 35 chr3 206297443 206297472 -11739686 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 8199 139 21 5 chr3 206297718 206299146 -11738012 - Tigger1 DNA MER2_type 0 2418 968 3215 223 92 9 chr3 206299164 206300382 -11736776 + L1PB1 LINE L1 6 1469 -5394 * 10371 183 8 6 chr3 206300381 206303621 -11733537 + L1PB1 LINE L1 3623 6864 -3 3635 144 26 77 chr3 206303621 206303831 -11733327 - Tigger1 DNA MER2_type -1442 976 757 3197 122 33 2 chr3 206303831 206304313 -11732845 + LOR1a LTR ERV1 1 497 0 3635 144 26 77 chr3 206304313 206304831 -11732327 - Tigger1 DNA MER2_type -1661 757 285 710 156 23 16 chr3 206304931 206305059 -11732099 + FRAM SINE Alu 30 158 -18 1299 145 0 34 chr3 206305059 206305293 -11731865 - Tigger1 DNA MER2_type -2192 226 1 643 325 30 24 chr3 206305534 206305829 -11731329 - LTR16C LTR ERVL -2 489 193 689 87 0 10 chr3 206306273 206306376 -11730782 + (TTCC)n Simple_repeat Simple_repeat 4 105 0 1867 157 4 0 chr3 206306376 206306657 -11730501 - AluSx SINE Alu -30 282 1 268 425 59 7 chr3 206306813 206306966 -11730192 + L2 LINE L2 3088 3248 -24 262 273 0 0 chr3 206308011 206308099 -11729059 - L1MC4 LINE L1 -1341 6701 6614 201 229 0 0 chr3 206308100 206308148 -11729010 + (TA)n Simple_repeat Simple_repeat 1 48 0 309 225 45 34 chr3 206308150 206308239 -11728919 + L1MC4 LINE L1 6615 6704 -1338 207 250 30 60 chr3 206308389 206308489 -11728669 - MIR3 SINE MIR -11 197 101 560 248 29 0 chr3 206309311 206309448 -11727710 + MIR SINE MIR 57 197 -65 689 234 12 123 chr3 206309471 206309572 -11727586 - MIR SINE MIR 0 262 151 2312 102 0 6 chr3 206309572 206309885 -11727273 + AluY SINE Alu 1 311 0 689 234 12 123 chr3 206309885 206310035 -11727123 - MIR SINE MIR -111 151 39 7958 186 8 0 chr3 206310051 206310212 -11726946 + L1PA14 LINE L1 3793 3951 -2210 2282 110 3 0 chr3 206310212 206310522 -11726636 + AluSp SINE Alu 1 311 -2 7958 186 8 0 chr3 206310522 206312715 -11724443 + L1PA14 LINE L1 3951 6160 -1 6185 246 36 24 chr3 206312866 206314072 -11723086 + L1MDa LINE L1 2216 3406 -3134 1137 280 63 83 chr3 206314072 206314689 -11722469 - MER77 LTR ERV1 0 605 1 6185 246 36 24 chr3 206314689 206315168 -11721990 + L1MDa LINE L1 3406 3878 -2662 1383 241 41 0 chr3 206315168 206315459 -11721699 + AluJo SINE Alu 1 303 -9 6185 246 36 24 chr3 206315459 206316248 -11720910 + L1MDa LINE L1 3878 4715 -1825 * 10825 170 16 27 chr3 206316242 206318756 -11718402 + L1MA5 LINE L1 3296 5777 -523 2164 115 0 3 chr3 206318756 206319051 -11718107 + AluSg SINE Alu 1 294 -16 10825 170 16 27 chr3 206319051 206319263 -11717895 + L1MA5 LINE L1 5777 5990 -310 2733 173 32 19 chr3 206319263 206319855 -11717303 + L1MD1 LINE L1 5639 6242 0 2994 206 34 34 chr3 206319867 206320086 -11717072 + L1MD2 LINE L1 5606 5824 -535 1958 90 98 11 chr3 206320086 206320363 -11716795 + AluSc SINE Alu 1 301 -8 2994 206 34 34 chr3 206320363 206320887 -11716271 + L1MD2 LINE L1 5823 6349 -10 210 71 0 0 chr3 206321319 206321347 -11715811 + (A)n Simple_repeat Simple_repeat 1 28 0 327 273 9 9 chr3 206321522 206321632 -11715526 + MLT1K LTR MaLR 479 588 0 217 389 0 0 chr3 206321670 206321819 -11715339 + (CA)n Simple_repeat Simple_repeat 2 150 0 2676 262 126 40 chr3 206322457 206324040 -11713118 - L1MC4a LINE L1 -127 7681 5964 2428 71 3 0 chr3 206324455 206324765 -11712393 - AluY SINE Alu 0 311 1 339 255 38 0 chr3 206324795 206324901 -11712257 - L1MEd LINE L1 -4975 1144 1035 2200 39 0 0 chr3 206325077 206325332 -11711826 - AluY SINE Alu -16 295 41 2228 105 0 10 chr3 206325389 206325695 -11711463 - AluSx SINE Alu -7 305 3 387 341 39 1 chr3 206326270 206326409 -11710749 - MIR SINE MIR -46 162 19 346 250 0 11 chr3 206326611 206326699 -11710459 + MIR3 SINE MIR 111 197 -11 1623 211 188 62 chr3 206327142 206327173 -11709985 + L1ME2 LINE L1 5326 5352 -812 216 97 0 0 chr3 206327173 206327204 -11709954 + (TA)n Simple_repeat Simple_repeat 2 32 0 1623 211 188 62 chr3 206327204 206327910 -11709248 + L1ME2 LINE L1 5352 6156 -8 563 146 0 10 chr3 206328270 206328373 -11708785 + (TTCC)n Simple_repeat Simple_repeat 3 104 0 2013 158 3 0 chr3 206328375 206328686 -11708472 - AluSq SINE Alu -1 312 1 457 286 71 48 chr3 206328941 206329151 -11708007 + MIR SINE MIR 14 228 -34 2212 174 14 25 chr3 206329177 206329608 -11707550 - MSTB LTR MaLR 0 426 1 224 354 87 8 chr3 206329631 206329758 -11707400 + L2 LINE L2 3162 3298 -15 198 234 62 47 chr3 206330228 206330292 -11706866 + L2 LINE L2 3249 3313 0 207 320 0 0 chr3 206330361 206330411 -11706747 - MIR3 SINE MIR -15 193 144 575 271 124 17 chr3 206330423 206330843 -11706315 - LTR33A LTR ERVL -20 503 1 446 277 176 33 chr3 206431587 206431980 -11605178 - L1ME3A LINE L1 -219 5951 5503 2177 121 0 0 chr3 206432446 206432736 -11604422 + AluSg SINE Alu 1 290 -20 223 233 62 41 chr3 206433181 206433295 -11603863 - MIR SINE MIR -28 234 119 23 33 0 0 chr3 206433981 206434011 -11603147 + AT_rich Low_complexity Low_complexity 1 30 0 201 167 0 24 chr3 206434080 206434122 -11603036 - MIR SINE MIR -108 154 114 252 309 49 56 chr3 206434198 206434360 -11602798 - MIR3 SINE MIR -35 173 13 188 271 62 0 chr3 206434792 206434840 -11602318 + MIR SINE MIR 99 149 -113 727 308 94 0 chr3 206434992 206435226 -11601932 + MIR SINE MIR 2 257 -5 24 0 0 0 chr3 206435226 206435250 -11601908 + AT_rich Low_complexity Low_complexity 1 24 0 2350 42 3 0 chr3 206435532 206435815 -11601343 - L1P3 LINE L1 -390 5764 5481 2125 101 0 0 chr3 206435815 206436093 -11601065 - AluSx SINE Alu -1 311 34 1062 315 63 26 chr3 206437013 206437394 -11599764 + MLT1I LTR MaLR 6 400 -9 227 169 39 13 chr3 206438178 206438255 -11598903 + CT-rich Low_complexity Low_complexity 3 81 0 1056 257 93 74 chr3 206438489 206438990 -11598168 + L1ME LINE L1 2272 2762 -3384 2119 107 0 7 chr3 206438990 206439280 -11597878 + AluSc SINE Alu 1 288 -21 1056 257 93 74 chr3 206439280 206439891 -11597267 + L1ME LINE L1 2762 3406 -2740 518 224 0 37 chr3 206439893 206440027 -11597131 + L1ME LINE L1 5471 5599 -567 299 248 83 37 chr3 206440029 206440138 -11597020 + LTR16A LTR ERVL 52 165 -285 3460 96 2 2 chr3 206440147 206440627 -11596531 + L1PA6 LINE L1 5675 6154 0 1620 203 26 106 chr3 206440828 206441666 -11595492 - L1 LINE L1 -3435 3413 2644 1833 220 33 10 chr3 206441667 206441681 -11595477 - L1 LINE L1 -815 5331 5319 7236 44 19 6 chr3 206441681 206443273 -11593885 - L1PA3 LINE L1 -3 6152 4549 1833 220 33 10 chr3 206443273 206443745 -11593413 - L1 LINE L1 -827 5319 4834 6122 45 1 0 chr3 206443863 206444610 -11592548 - L1PA3 LINE L1 -1748 4398 3651 4485 67 35 34 chr3 206444609 206445315 -11591843 + L1P LINE L1 4455 5161 -985 * 264 145 0 123 chr3 206445504 206445642 -11591516 + L1P LINE L1 5272 5392 -762 422 285 23 8 chr3 206446359 206446489 -11590669 - MIR SINE MIR -74 188 57 1182 121 63 14 chr3 206446706 206446929 -11590229 + L1M1 LINE L1 5559 5792 -513 252 329 0 0 chr3 206447193 206447263 -11589895 + MIR SINE MIR 54 123 -139 25 31 0 0 chr3 206448140 206448172 -11588986 + AT_rich Low_complexity Low_complexity 1 32 0 252 0 0 0 chr3 206448738 206448766 -11588392 + (TA)n Simple_repeat Simple_repeat 1 28 0 1072 338 68 11 chr3 206448771 206449297 -11587861 + HERVL LTR ERVL 3843 4398 -1256 338 352 62 17 chr3 206449469 206449648 -11587510 - MIR SINE MIR -66 196 10 196 197 61 91 chr3 206449701 206449767 -11587391 + L2 LINE L2 3200 3263 -9 1799 288 37 11 chr3 206449952 206450493 -11586665 - MLT1H1 LTR MaLR 0 555 1 279 307 13 0 chr3 206450717 206450792 -11586366 + MIR SINE MIR 76 151 -57 1509 226 61 9 chr3 206450820 206451165 -11585993 - MLT1A1 LTR MaLR 0 365 3 21 57 0 0 chr3 206451191 206451226 -11585932 + AT_rich Low_complexity Low_complexity 1 35 0 1899 168 38 15 chr3 206451242 206451582 -11585576 - MER7A DNA MER2_type 0 346 1 477 272 72 33 chr3 206452419 206452599 -11584559 - MIR3 SINE MIR -6 202 16 289 328 8 17 chr3 206452634 206452753 -11584405 - MIR3 SINE MIR -13 195 78 291 349 146 5 chr3 206453359 206453551 -11583607 + MIR SINE MIR 31 249 -13 351 167 0 17 chr3 206453972 206454032 -11583126 - tRNA-Lys-AAA tRNA tRNA -17 59 1 2735 37 0 0 chr3 206454035 206454363 -11582795 + L1PA5 LINE L1 5827 6154 0 302 341 23 17 chr3 206455124 206455300 -11581858 + CT-rich Low_complexity Low_complexity 2 178 0 268 368 50 67 chr3 206456189 206456531 -11580627 + L2 LINE L2 2924 3259 -13 794 236 44 22 chr3 206456613 206456842 -11580316 - L1ME1 LINE L1 -5 6161 5928 873 210 118 0 chr3 206456842 206457028 -11580130 + MER3 DNA MER1_type 1 208 -1 437 216 22 52 chr3 206457031 206457165 -11579993 - L1ME1 LINE L1 -233 5933 5804 1464 239 39 15 chr3 206457324 206457654 -11579504 - MLT1A1 LTR MaLR -27 338 1 2788 164 17 2 chr3 206458339 206458868 -11578290 - L1MA9 LINE L1 0 7272 6736 243 88 0 0 chr3 206458878 206458912 -11578246 + (TG)n Simple_repeat Simple_repeat 2 35 0 612 110 0 30 chr3 206458937 206459037 -11578121 - L1PB4 LINE L1 -13 6143 6047 432 192 0 13 chr3 206459039 206459117 -11578041 + Charlie3 DNA MER1_type 1 77 -2633 252 206 54 65 chr3 206459084 206459176 -11577982 + Charlie3 DNA MER1_type 203 293 -2417 * 4127 198 37 4 chr3 206459733 206461075 -11576083 - L1MA9 LINE L1 -536 6736 5343 1197 201 33 20 chr3 206461080 206461383 -11575775 + L1 LINE L1 3566 3872 -2274 886 253 88 49 chr3 206461382 206461884 -11575274 - L1MA9 LINE L1 -5299 1731 93 * 2214 113 0 3 chr3 206462408 206462719 -11574439 + AluSq SINE Alu 1 310 -3 649 218 8 16 chr3 206462729 206462853 -11574305 - MER5A DNA MER1_type -66 123 1 380 336 27 9 chr3 206463609 206463719 -11573439 + MIR3 SINE MIR 3 114 -94 202 228 105 97 chr3 206464726 206464840 -11572318 - MIR SINE MIR -85 177 63 476 145 0 0 chr3 206464872 206464941 -11572217 + Tigger2 DNA MER2_type 1 69 -2649 * 1456 128 161 77 chr3 206464925 206465278 -11571880 + Tigger2 DNA MER2_type 2267 2649 -69 1485 236 62 57 chr3 206465279 206465725 -11571433 + MLT2B1 LTR ERVL 31 481 -39 207 69 0 0 chr3 206465725 206465754 -11571404 + (CA)n Simple_repeat Simple_repeat 2 30 0 1485 236 62 57 chr3 206465754 206465795 -11571363 + MLT2B1 LTR ERVL 481 520 0 194 273 0 0 chr3 206466087 206466131 -11571027 - MIR3 SINE MIR -32 176 133 2688 35 0 0 chr3 206466265 206466575 -11570583 - AluY SINE Alu -1 310 1 230 354 0 0 chr3 206466806 206466888 -11570270 + MIR SINE MIR 67 148 -60 362 336 113 9 chr3 206468386 206468615 -11568543 - MIR SINE MIR -2 260 8 546 276 71 108 chr3 206468822 206469256 -11567902 + MLT1J2 LTR MaLR 6 423 -27 986 194 50 92 chr3 206469355 206469876 -11567282 + L1MC5 LINE L1 7426 7924 -37 331 310 35 18 chr3 206470669 206470782 -11566376 + MIR SINE MIR 33 147 -61 288 356 14 77 chr3 206471435 206471643 -11565515 - L2 LINE L2 -216 3056 2862 704 314 15 0 chr3 206472488 206472692 -11564466 + MIR SINE MIR 13 219 -43 1985 130 7 3 chr3 206472704 206473169 -11563989 + AluSx SINE Alu 11 476 0 1352 44 6 6 chr3 206472989 206473214 -11563944 + (GAAA)n Simple_repeat Simple_repeat 1 225 0 226 332 106 85 chr3 206473316 206473647 -11563511 + L2 LINE L2 2845 3182 -90 309 297 146 50 chr3 206474420 206474885 -11562273 + L1ME LINE L1 2401 2910 -3236 34 65 0 0 chr3 206475081 206475143 -11562015 + AT_rich Low_complexity Low_complexity 1 62 0 287 267 183 21 chr3 206475462 206475653 -11561505 + L1ME LINE L1 5523 5744 -426 1136 245 68 83 chr3 206475925 206476023 -11561135 + HAL1b LINE L1 353 451 -897 2420 156 44 0 chr3 206476023 206476433 -11560725 + MSTA LTR MaLR 1 428 0 1136 245 68 83 chr3 206476433 206476950 -11560208 + HAL1b LINE L1 451 959 -389 2484 162 61 0 chr3 206476952 206477414 -11559744 - L1MC1 LINE L1 -8 6605 6116 2945 153 36 14 chr3 206477414 206477919 -11559239 - MER34 LTR ERV1 0 542 27 8097 238 38 22 chr3 206477924 206479636 -11557522 - L1MC1 LINE L1 -488 6125 4442 1988 158 0 22 chr3 206479636 206479947 -11557211 + AluSx SINE Alu 1 304 -8 8097 238 38 22 chr3 206479947 206480713 -11556445 - L1MC1 LINE L1 -2171 4442 3690 2146 76 0 14 chr3 206480713 206480989 -11556169 - AluY SINE Alu -39 272 1 8097 238 38 22 chr3 206480989 206481698 -11555460 - L1MC1 LINE L1 -2923 3690 2907 359 303 21 0 chr3 206481765 206481910 -11555248 - L1MC1 LINE L1 -3649 2777 2630 251 98 22 4 chr3 206481967 206482022 -11555136 - L1MC1 LINE L1 -1 6343 6285 4966 174 92 53 chr3 206482022 206482560 -11554598 - L1MC1 LINE L1 -3947 2479 1963 2520 110 30 3 chr3 206482560 206482925 -11554233 + THE1C LTR MaLR 1 375 0 4966 174 92 53 chr3 206482925 206483099 -11554059 - L1MC1 LINE L1 -4463 1963 1797 2404 60 0 13 chr3 206483099 206483424 -11553734 - AluY SINE Alu 0 311 1 4966 174 92 53 chr3 206483424 206484232 -11552926 - L1MC1 LINE L1 -4629 1797 978 4280 132 39 21 chr3 206484235 206484934 -11552224 - MER50 LTR ERV1 -23 711 1 4323 186 27 74 chr3 206484934 206485940 -11551218 - L1MC1 LINE L1 -5447 979 21 241 244 55 31 chr3 206485949 206486076 -11551082 + HAL1b LINE L1 952 1081 -267 2143 101 6 31 chr3 206486236 206486553 -11550605 - AluSq SINE Alu -4 309 1 24 67 0 0 chr3 206486654 206486699 -11550459 + AT_rich Low_complexity Low_complexity 1 45 0 1517 185 6 78 chr3 206487020 206487355 -11549803 - AluJb SINE Alu -1 311 1 1718 35 0 0 chr3 206487398 206487601 -11549557 - L1PA5 LINE L1 -13 6141 5939 454 296 83 89 chr3 206487606 206488134 -11549024 - HAL1 LINE L1 -1165 1342 818 209 246 0 18 chr3 206488790 206488847 -11548311 + (TA)n Simple_repeat Simple_repeat 1 56 0 2060 115 0 22 chr3 206488853 206489165 -11547993 - AluSx SINE Alu -7 305 1 198 0 0 0 chr3 206489382 206489404 -11547754 + (TG)n Simple_repeat Simple_repeat 1 22 0 2115 112 3 3 chr3 206490074 206490369 -11546789 + AluSg SINE Alu 1 295 -15 25 51 0 0 chr3 206490771 206490810 -11546348 + AT_rich Low_complexity Low_complexity 1 39 0 1319 189 68 12 chr3 206490972 206491220 -11545938 + Tigger7 DNA MER2_type 1 262 -2225 568 190 0 20 chr3 206491227 206491327 -11545831 + Tigger7 DNA MER2_type 2390 2487 0 30 0 0 0 chr3 206491750 206491780 -11545378 + AT_rich Low_complexity Low_complexity 1 30 0 221 309 43 32 chr3 206492133 206492227 -11544931 + MIR SINE MIR 24 118 -90 431 265 35 50 chr3 206492299 206492499 -11544659 + MIR3 SINE MIR 12 208 0 1517 87 53 10 chr3 206492780 206492988 -11544170 - AluSq SINE Alu -96 217 1 192 250 83 0 chr3 206493877 206493937 -11543221 + L2 LINE L2 2995 3059 -254 21 0 0 0 chr3 206494044 206494065 -11543093 + AT_rich Low_complexity Low_complexity 1 21 0 2241 101 0 0 chr3 206494065 206494353 -11542805 - AluSx SINE Alu -24 288 1 518 295 58 0 chr3 206494907 206495080 -11542078 + MIR3 SINE MIR 16 198 -10 231 260 55 14 chr3 206495594 206495667 -11541491 - MIR SINE MIR -69 193 118 1297 188 10 17 chr3 206498293 206498585 -11538573 + L1MC4 LINE L1 6788 7077 -965 2366 56 0 0 chr3 206498780 206499065 -11538093 + AluY SINE Alu 1 285 -26 207 0 0 0 chr3 206499068 206499091 -11538067 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 299 162 114 48 chr3 206499552 206499657 -11537501 - HAL1b LINE L1 -5 1343 1232 23 54 0 0 chr3 206499775 206499812 -11537346 + AT_rich Low_complexity Low_complexity 1 37 0 702 262 30 6 chr3 206499991 206500159 -11536999 + LTR33 LTR ERVL 1 172 -349 483 247 53 41 chr3 206500271 206500441 -11536717 + LTR33 LTR ERVL 345 516 -5 308 262 66 25 chr3 206500517 206500639 -11536519 - HAL1 LINE L1 -134 2373 2247 437 273 107 0 chr3 206501192 206501342 -11535816 + L2 LINE L2 2373 2538 -776 197 315 67 34 chr3 206501358 206501447 -11535711 - MIR SINE MIR -100 162 71 278 284 30 82 chr3 206502478 206502612 -11534546 + MIR3 SINE MIR 15 141 -67 236 282 103 40 chr3 206502997 206503171 -11533987 - MIR SINE MIR -15 247 63 195 328 47 16 chr3 206503318 206503382 -11533776 + MIR3 SINE MIR 103 168 -40 2079 140 19 40 chr3 206504777 206505149 -11532009 + THE1B LTR MaLR 1 364 0 209 306 60 37 chr3 206505693 206505827 -11531331 - L2 LINE L2 0 3272 3136 244 357 71 9 chr3 206505948 206506060 -11531098 - L2 LINE L2 0 3272 3154 297 270 53 92 chr3 206506107 206506259 -11530899 + MARNA DNA Mariner 387 532 -54 187 285 122 16 chr3 206506283 206506412 -11530746 + MIR SINE MIR 1 142 -66 186 43 0 0 chr3 206507022 206507045 -11530113 + (A)n Simple_repeat Simple_repeat 1 23 0 998 216 20 5 chr3 206507138 206507342 -11529816 - MER6B DNA MER2_type -3 207 1 21 36 0 0 chr3 206507751 206507779 -11529379 + AT_rich Low_complexity Low_complexity 1 28 0 372 257 20 144 chr3 206508227 206508328 -11528830 - MIR3 SINE MIR 0 208 143 1435 185 7 52 chr3 206508328 206508636 -11528522 + AluJo SINE Alu 1 294 -18 372 257 20 144 chr3 206508636 206508736 -11528422 - MIR3 SINE MIR -65 143 32 189 358 165 0 chr3 206508765 206508874 -11528284 - L2 LINE L2 -17 3255 3129 21 0 0 0 chr3 206509258 206509279 -11527879 + AT_rich Low_complexity Low_complexity 1 21 0 624 318 70 29 chr3 206509279 206510169 -11526989 + L1ME3A LINE L1 4999 5923 -247 23 78 0 0 chr3 206510338 206510389 -11526769 + AT_rich Low_complexity Low_complexity 1 51 0 34 55 0 0 chr3 206510450 206510505 -11526653 + AT_rich Low_complexity Low_complexity 1 55 0 524 216 45 68 chr3 206510644 206510820 -11526338 + L1MC5 LINE L1 7723 7894 -67 22 103 0 0 chr3 206511247 206511325 -11525833 + AT_rich Low_complexity Low_complexity 1 78 0 21 0 0 0 chr3 206512200 206512221 -11524937 + AT_rich Low_complexity Low_complexity 1 21 0 536 72 0 24 chr3 206512317 206512400 -11524758 + (TTCC)n Simple_repeat Simple_repeat 4 84 0 * 557 144 10 0 chr3 206512397 206512501 -11524657 + CT-rich Low_complexity Low_complexity 3 107 0 831 42 28 35 chr3 206512501 206512644 -11524514 + (TTTC)n Simple_repeat Simple_repeat 3 144 0 658 311 39 72 chr3 206512722 206513552 -11523606 - HAL1 LINE L1 -714 1793 992 4168 177 98 10 chr3 206514483 206515359 -11521799 - L1MA7 LINE L1 -2 6289 5337 1365 181 19 0 chr3 206515365 206515624 -11521534 - L1MA7 LINE L1 -1036 5110 4847 955 211 53 20 chr3 206515936 206516182 -11520976 + L1MD3 LINE L1 7733 7986 -9 369 0 0 0 chr3 206516187 206516228 -11520930 + (CA)n Simple_repeat Simple_repeat 2 42 0 187 340 0 0 chr3 206516548 206516601 -11520557 - L2 LINE L2 -1 3271 3219 210 219 0 0 chr3 206517478 206517519 -11519639 - L2 LINE L2 -6 3307 3267 2211 92 0 0 chr3 206517668 206517951 -11519207 + AluSg SINE Alu 1 283 -27 186 43 0 0 chr3 206518176 206518199 -11518959 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 466 277 176 33 chr3 206518592 206518985 -11518173 - L1ME3A LINE L1 -219 5951 5503 2146 121 0 0 chr3 206519451 206519741 -11517417 + AluSg SINE Alu 1 290 -20 223 125 0 0 chr3 206520263 206520295 -11516863 - MIR SINE MIR -58 150 119 23 33 0 0 chr3 206520981 206521011 -11516147 + AT_rich Low_complexity Low_complexity 1 30 0 197 224 224 0 chr3 206521080 206521138 -11516020 - MIR SINE MIR -108 154 84 284 304 50 50 chr3 206521199 206521360 -11515798 - MIR3 SINE MIR -35 173 13 188 284 63 28 chr3 206521792 206521878 -11515280 + MIR SINE MIR 99 147 -61 726 308 94 0 chr3 206521992 206522226 -11514932 + MIR SINE MIR 2 257 -5 24 0 0 0 chr3 206522226 206522250 -11514908 + AT_rich Low_complexity Low_complexity 1 24 0 6983 49 20 11 chr3 206522532 206522815 -11514343 - L1P3 LINE L1 -390 5764 5485 2305 97 0 6 chr3 206522815 206523126 -11514032 - AluSg SINE Alu -1 309 1 6983 49 20 11 chr3 206523126 206524135 -11513023 - L1P3 LINE L1 -669 5485 4455 6538 39 1 0 chr3 206524134 206524925 -11512233 + L1P3 LINE L1 3651 4442 -1704 * 31 68 0 0 chr3 206525111 206525170 -11511988 + AT_rich Low_complexity Low_complexity 1 59 0 21 0 0 0 chr3 206525532 206525553 -11511605 + AT_rich Low_complexity Low_complexity 1 21 0 432 261 22 22 chr3 206526086 206526220 -11510938 + MER5A DNA MER1_type 5 138 -51 199 283 0 0 chr3 206526352 206526398 -11510760 + MER5A DNA MER1_type 143 188 -1 408 256 120 8 chr3 206527064 206527181 -11509977 + MER5B DNA MER1_type 1 130 -48 3777 221 3 25 chr3 206527205 206527677 -11509481 - L1P LINE L1 -1935 4211 3765 2004 120 6 43 chr3 206527677 206528001 -11509157 - AluSx SINE Alu 0 312 1 3777 221 3 25 chr3 206528001 206528397 -11508761 - L1P LINE L1 -2381 3765 3362 2805 204 3 15 chr3 206528387 206529001 -11508157 + L1 LINE L1 4226 4832 -1314 * 5281 147 15 1 chr3 206529013 206530183 -11506975 + L1PA16 LINE L1 4975 6157 -9 215 224 0 20 chr3 206530201 206530250 -11506908 - MER5B DNA MER1_type -129 49 2 229 314 116 0 chr3 206530290 206530376 -11506782 - MIR SINE MIR -114 148 53 270 0 0 0 chr3 206531012 206531042 -11506116 + (TG)n Simple_repeat Simple_repeat 2 31 0 3947 316 17 19 chr3 206531651 206533289 -11503869 + L1PBa LINE L1 3 1637 -5226 2100 211 26 12 chr3 206533257 206539287 -11497871 + L1PB3 LINE L1 1 6204 -7 * 23 0 0 0 chr3 206539287 206539310 -11497848 + AT_rich Low_complexity Low_complexity 1 23 0 369 0 0 0 chr3 206539554 206539595 -11497563 + (TG)n Simple_repeat Simple_repeat 2 42 0 585 338 13 41 chr3 206539606 206539994 -11497164 + ERVL LTR ERVL 3881 4257 -1507 2135 122 0 16 chr3 206540390 206540701 -11496457 - AluSx SINE Alu -2 310 5 332 355 101 18 chr3 206541022 206541250 -11495908 - ERVL LTR ERVL -2167 3597 3351 21 0 0 0 chr3 206541290 206541311 -11495847 + AT_rich Low_complexity Low_complexity 1 21 0 403 299 132 29 chr3 206541322 206541700 -11495458 + L1ME3A LINE L1 1930 2346 -4050 305 256 6 38 chr3 206541701 206541861 -11495297 + (TA)n Simple_repeat Simple_repeat 1 155 0 227 55 14 82 chr3 206541882 206541955 -11495203 + (TA)n Simple_repeat Simple_repeat 1 68 0 366 70 42 0 chr3 206542086 206542157 -11495001 + (TATAG)n Simple_repeat Simple_repeat 2 75 0 209 55 0 91 chr3 206542157 206542212 -11494946 + (TA)n Simple_repeat Simple_repeat 1 50 0 1087 245 77 59 chr3 206542212 206543013 -11494145 + L1ME3A LINE L1 2289 3104 -3111 486 263 8 23 chr3 206543279 206543412 -11493746 - MLT1J2 LTR MaLR -275 175 45 666 292 87 15 chr3 206543481 206543943 -11493215 + L1ME3A LINE L1 4383 4877 -1338 368 78 61 2 chr3 206543964 206544200 -11492958 + AluSp SINE Alu 1 295 -8 267 103 0 0 chr3 206544313 206544352 -11492806 + (T)n Simple_repeat Simple_repeat 1 39 0 417 70 0 0 chr3 206544416 206544473 -11492685 + (TTCC)n Simple_repeat Simple_repeat 3 59 0 1147 107 6 28 chr3 206544475 206544653 -11492505 - L1PA8A LINE L1 -8 6123 5950 749 140 53 47 chr3 206545042 206545192 -11491966 + FAM SINE Alu 1 43 -6 367 281 71 52 chr3 206545266 206545590 -11491568 + L1ME3A LINE L1 5026 5355 -860 4483 48 0 0 chr3 206545597 206546164 -11490994 - L1P LINE L1 -3597 2549 1983 7554 23 3 2 chr3 206546164 206547668 -11489490 + L1PA4 LINE L1 4648 6152 -3 1602 267 28 34 chr3 206547699 206548344 -11488814 + L1ME3A LINE L1 5389 6029 -210 221 322 0 0 chr3 206548628 206548715 -11488443 - L2 LINE L2 -1441 1873 1787 227 266 32 75 chr3 206549000 206549094 -11488064 - MLT1L LTR MaLR -361 254 165 1227 254 53 29 chr3 206549147 206549596 -11487562 - LTR40b LTR ERVL -2 460 1 275 291 47 0 chr3 206550055 206550141 -11487017 + MIR3 SINE MIR 115 204 -4 2069 85 0 85 chr3 206550232 206550550 -11486608 - AluSg1 SINE Alu -16 293 3 243 0 0 0 chr3 206551156 206551183 -11485975 + (TG)n Simple_repeat Simple_repeat 1 27 0 240 404 60 0 chr3 206551254 206551405 -11485753 + L2 LINE L2 3107 3266 -6 481 277 73 15 chr3 206551417 206551554 -11485604 - MIR3 SINE MIR -45 163 19 312 27 0 0 chr3 206551842 206551879 -11485279 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 39 38 0 0 chr3 206551963 206552016 -11485142 + AT_rich Low_complexity Low_complexity 1 53 0 1427 184 60 0 chr3 206552017 206552172 -11484986 - AluJo SINE Alu -25 287 108 281 64 43 0 chr3 206552172 206552219 -11484939 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 1427 184 60 0 chr3 206552219 206552330 -11484828 - AluJo SINE Alu -204 108 5 241 295 64 20 chr3 206552516 206552641 -11484517 + MIR SINE MIR 25 131 -77 396 286 69 42 chr3 206553219 206553408 -11483750 + MIR SINE MIR 59 252 -10 27 87 0 0 chr3 206553609 206553678 -11483480 + AT_rich Low_complexity Low_complexity 1 69 0 396 59 0 0 chr3 206554281 206554332 -11482826 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 2078 102 0 34 chr3 206554332 206554626 -11482532 - AluSg SINE Alu -26 284 1 270 127 42 0 chr3 206556217 206556288 -11480870 + (TA)n Simple_repeat Simple_repeat 2 75 0 193 346 126 16 chr3 206559384 206559511 -11477647 - MIR3 SINE MIR -48 160 20 236 347 132 25 chr3 206560320 206560441 -11476717 + L2 LINE L2 3122 3255 -17 257 326 47 0 chr3 206560993 206561079 -11476079 - MIR SINE MIR -127 135 46 257 286 152 0 chr3 206561114 206561219 -11475939 + MIR SINE MIR 88 208 -54 2136 234 73 48 chr3 206562834 206563543 -11473615 + L1MA8 LINE L1 466 1192 -6297 3328 249 35 34 chr3 206563558 206564792 -11472366 + L1MA8 LINE L1 2011 3245 -4320 4376 184 61 6 chr3 206564793 206565821 -11471337 + L1MA8 LINE L1 5785 6861 -743 1297 173 135 3 chr3 206565831 206566120 -11471038 + L1MA8 LINE L1 7373 7699 -11 1231 249 102 0 chr3 206566142 206566632 -11470526 - MER114 LTR ERV -56 592 53 21 0 0 0 chr3 206566913 206566934 -11470224 + AT_rich Low_complexity Low_complexity 1 21 0 749 100 107 0 chr3 206566979 206567119 -11470039 + L1M LINE L1 5257 5411 -880 251 376 46 0 chr3 206568346 206568455 -11468703 - L2 LINE L2 -22 3291 3178 2402 73 7 0 chr3 206568487 206568787 -11468371 - AluSg SINE Alu -8 302 1 315 0 0 0 chr3 206568833 206568868 -11468290 + (TG)n Simple_repeat Simple_repeat 2 36 0 281 279 36 57 chr3 206569445 206569585 -11467573 + MIR SINE MIR 76 212 -50 29 70 0 0 chr3 206569620 206569677 -11467481 + AT_rich Low_complexity Low_complexity 1 57 0 1311 238 25 20 chr3 206570128 206570481 -11466677 - MLT1A1 LTR MaLR 0 365 11 318 212 12 47 chr3 206570618 206570703 -11466455 - MLT1J LTR MaLR -43 468 387 1051 184 130 6 chr3 206570795 206571126 -11466032 + Charlie1 DNA MER1_type 2339 2710 -51 257 228 141 0 chr3 206571135 206571227 -11465931 - MLT1J LTR MaLR -396 115 11 507 345 51 15 chr3 206571264 206571675 -11465483 - L1ME3A LINE L1 -224 5946 5521 451 251 80 51 chr3 206571842 206572017 -11465141 - MLT1L LTR MaLR -70 545 366 409 263 32 21 chr3 206572402 206572592 -11464566 - L1MCa LINE L1 -4051 2556 2365 1029 191 6 0 chr3 206572617 206572795 -11464363 - AluJb SINE Alu 0 312 134 3386 177 25 36 chr3 206572809 206573057 -11464101 - L1MB8 LINE L1 -25 6153 5904 2300 100 3 0 chr3 206573057 206573356 -11463802 + AluSp SINE Alu 9 308 -5 3386 177 25 36 chr3 206573356 206573823 -11463335 - L1MB8 LINE L1 -274 5904 5446 279 289 21 28 chr3 206573891 206574033 -11463125 + L1MEc LINE L1 1696 1836 -4560 189 0 0 0 chr3 206574083 206574104 -11463054 + (TAA)n Simple_repeat Simple_repeat 2 22 0 21 0 0 0 chr3 206574466 206574487 -11462671 + AT_rich Low_complexity Low_complexity 1 21 0 326 288 162 40 chr3 206574552 206574774 -11462384 + MLT1K LTR MaLR 319 567 -21 215 356 11 11 chr3 206575663 206575753 -11461405 - MIR SINE MIR -116 146 57 602 265 97 8 chr3 206575819 206576182 -11460976 - MLT1J2 LTR MaLR 0 472 42 368 218 23 11 chr3 206576362 206576449 -11460709 - MLT1J LTR MaLR 0 511 424 180 0 0 0 chr3 206576592 206576612 -11460546 + (A)n Simple_repeat Simple_repeat 1 20 0 314 269 52 70 chr3 206576901 206577187 -11459971 - L1MCa LINE L1 -4771 1836 1380 218 368 104 9 chr3 206577488 206577594 -11459564 - L2 LINE L2 -5 3267 3152 537 284 162 0 chr3 206577707 206577855 -11459303 + MIR SINE MIR 9 180 -82 1748 272 64 29 chr3 206578131 206578676 -11458482 + MLT1E LTR MaLR 27 590 -3 27 0 0 0 chr3 206578703 206578730 -11458428 + AT_rich Low_complexity Low_complexity 1 27 0 1582 135 0 4 chr3 206578818 206579073 -11458085 + AluJb SINE Alu 54 307 0 207 272 136 39 chr3 206579900 206579992 -11457166 + L2 LINE L2 2875 2979 -293 2253 106 0 3 chr3 206579992 206580284 -11456874 - AluSq SINE Alu -20 293 3 27 62 0 0 chr3 206580482 206580530 -11456628 + AT_rich Low_complexity Low_complexity 1 48 0 706 319 40 26 chr3 206581479 206581858 -11455300 + L1MEc LINE L1 35 418 -5978 405 289 41 37 chr3 206581911 206582153 -11455005 + L1MEc LINE L1 509 751 -5645 281 154 0 0 chr3 206582165 206582217 -11454941 + L1MC4 LINE L1 6754 6805 -1237 * 1133 269 40 32 chr3 206582211 206582610 -11454548 + L1ME3A LINE L1 8 748 -5674 963 229 57 37 chr3 206582659 206583041 -11454117 - MLT1C LTR MaLR 0 467 1 450 264 68 27 chr3 206583042 206583190 -11453968 + L1ME3A LINE L1 786 939 -5483 1997 247 83 26 chr3 206583270 206584589 -11452569 + L1ME3A LINE L1 930 2501 -4621 1116 200 17 89 chr3 206584576 206584936 -11452222 + L1MD3 LINE L1 6763 7096 -899 * 414 252 0 37 chr3 206584939 206585046 -11452112 + MLT1F1 LTR MaLR 21 123 -444 1705 228 81 26 chr3 206585051 206585595 -11451563 + L1MD3 LINE L1 7410 7983 -12 1173 261 86 72 chr3 206585584 206586085 -11451073 + L1ME3A LINE L1 3067 3560 -3381 * 2119 107 0 7 chr3 206586085 206586375 -11450783 + AluSc SINE Alu 1 288 -21 1173 261 86 72 chr3 206586375 206586993 -11450165 + L1ME3A LINE L1 3560 4201 -2740 518 224 0 37 chr3 206586995 206587129 -11450029 + L1ME3A LINE L1 6266 6394 -567 299 248 83 37 chr3 206587131 206587240 -11449918 + LTR16A LTR ERVL 52 165 -285 3256 58 88 0 chr3 206587249 206587681 -11449477 + L1PA7 LINE L1 5675 6144 -10 237 33 0 0 chr3 206587716 206587746 -11449412 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 633 333 42 0 chr3 206587761 206587998 -11449160 + LTR16A LTR ERVL 171 417 -33 1399 103 9 9 chr3 206588222 206588436 -11448722 - L1PA14 LINE L1 0 6161 5948 329 98 0 33 chr3 206588436 206588497 -11448661 + L1P LINE L1 5101 5159 -987 684 248 43 24 chr3 206588501 206588755 -11448403 - L1M4 LINE L1 -748 5398 5140 1236 221 103 63 chr3 206588793 206589299 -11447859 + L1ME3A LINE L1 6429 6954 -11 192 259 111 0 chr3 206589555 206589636 -11447522 - MIR3 SINE MIR -7 201 112 * 449 325 26 7 chr3 206589627 206589778 -11447380 + MIR SINE MIR 16 169 -93 273 298 71 50 chr3 206590682 206590823 -11446335 - MIR SINE MIR -73 189 46 233 308 148 22 chr3 206591075 206591257 -11445901 + L2 LINE L2 3107 3311 -2 438 239 18 0 chr3 206592392 206592501 -11444657 - MIR SINE MIR 0 262 152 277 364 74 0 chr3 206593014 206593135 -11444023 - MIR SINE MIR -116 146 17 2339 97 24 0 chr3 206594305 206594646 -11442512 + L1PB1 LINE L1 5793 6141 -10 2224 70 0 7 chr3 206595663 206595986 -11441172 - AluY SINE Alu 0 321 1 37 76 0 0 chr3 206596087 206596166 -11440992 + AT_rich Low_complexity Low_complexity 1 79 0 317 316 204 37 chr3 206597700 206597969 -11439189 - L2 LINE L2 0 3272 2959 244 341 150 33 chr3 206598904 206599265 -11437893 - L2 LINE L2 0 3313 2911 359 353 94 8 chr3 206599520 206599786 -11437372 - L2 LINE L2 -443 2871 2583 291 293 69 58 chr3 206600137 206600311 -11436847 - MIR3 SINE MIR -27 181 6 694 194 38 23 chr3 206601180 206601425 -11435733 + L1MA9 LINE L1 5938 6290 -22 274 323 113 43 chr3 206601499 206601685 -11435473 + MIR3 SINE MIR 10 208 0 414 238 48 0 chr3 206601806 206601911 -11435247 - MIR SINE MIR -2 260 151 233 326 163 0 chr3 206602390 206602482 -11434676 + MIR3 SINE MIR 59 165 -43 1267 5 0 43 chr3 206602630 206602818 -11434340 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 649 338 139 11 chr3 206602830 206603386 -11433772 - L2 LINE L2 -42 3271 2628 333 317 0 0 chr3 206603471 206603553 -11433605 - L3 LINE CR1 -118 1459 1378 190 400 0 0 chr3 206603618 206603678 -11433480 - L3 LINE CR1 -231 1346 1287 627 261 33 5 chr3 206604654 206604838 -11432320 + MER5A DNA MER1_type 1 189 0 250 288 0 15 chr3 206604918 206604984 -11432174 - MIR SINE MIR -124 84 20 637 333 59 41 chr3 206605098 206605557 -11431601 + L1ME4a LINE L1 5625 6091 -30 290 316 173 36 chr3 206606205 206606373 -11430785 - L2 LINE L2 -5 3267 3077 503 232 40 62 chr3 206607410 206607587 -11429571 - MER5B DNA MER1_type -1 177 5 247 150 25 0 chr3 206607550 206607590 -11429568 - MER5B DNA MER1_type -137 41 1 438 277 23 8 chr3 206608155 206608285 -11428873 - MIR SINE MIR -74 188 57 4163 143 24 3 chr3 206608503 206609222 -11427936 + L1MA3 LINE L1 5559 6292 -13 252 329 0 0 chr3 206609879 206609949 -11427209 - MIR SINE MIR -139 123 54 330 45 0 0 chr3 206610730 206610774 -11426384 + (TG)n Simple_repeat Simple_repeat 2 45 0 610 275 11 22 chr3 206611303 206611481 -11425677 - MER5B DNA MER1_type -2 176 1 184 319 0 0 chr3 206611498 206611545 -11425613 - MIR SINE MIR -85 123 77 264 30 0 0 chr3 206612392 206612425 -11424733 + (CA)n Simple_repeat Simple_repeat 2 34 0 2316 103 0 0 chr3 206612829 206613130 -11424028 + AluSq SINE Alu 1 301 -12 338 273 64 36 chr3 206613169 206613279 -11423879 - MIR SINE MIR -61 147 35 26 30 0 0 chr3 206613283 206613316 -11423842 + AT_rich Low_complexity Low_complexity 1 33 0 187 336 66 16 chr3 206613473 206613595 -11423563 - MIR3 SINE MIR -6 202 75 199 325 96 24 chr3 206613758 206613841 -11423317 + MIR3 SINE MIR 86 174 -34 994 159 13 0 chr3 206614107 206614264 -11422894 + AluSq SINE Alu 136 294 -19 2415 141 19 36 chr3 206615749 206616168 -11420990 - MSTA LTR MaLR 0 428 17 184 321 95 36 chr3 206616204 206616288 -11420870 - L2 LINE L2 -51 3221 3133 2287 113 0 0 chr3 206616709 206617011 -11420147 - AluSx SINE Alu -10 302 1 217 192 30 152 chr3 206617041 206617098 -11420060 - MIR3 SINE MIR -2 206 164 1020 170 28 6 chr3 206617098 206617280 -11419878 - MER5A DNA MER1_type -3 186 1 217 192 30 152 chr3 206617280 206617321 -11419837 - MIR3 SINE MIR -44 164 120 201 305 0 17 chr3 206617576 206617635 -11419523 + MIR SINE MIR 88 145 -117 206 160 20 0 chr3 206618156 206618206 -11418952 + (TAGA)n Simple_repeat Simple_repeat 1 51 0 907 302 83 12 chr3 206618292 206618712 -11418446 + L1PB4 LINE L1 1 450 -6399 232 335 81 54 chr3 206619245 206619430 -11417728 + L1PB4 LINE L1 596 785 -6064 5635 258 57 3 chr3 206619571 206621101 -11416057 + L1PB4 LINE L1 1051 2663 -4186 1951 161 56 0 chr3 206621102 206621444 -11415714 - THE1C LTR MaLR 0 375 15 325 104 0 0 chr3 206621467 206621515 -11415643 - L1PA3 LINE L1 -1065 5081 5034 7749 16 2 0 chr3 206621515 206622602 -11414556 + L1PA3 LINE L1 5063 6151 -4 7961 205 25 65 chr3 206622618 206625158 -11412000 + L1PB4 LINE L1 2644 5080 -1768 2100 224 26 6 chr3 206625148 206625683 -11411475 + L1PB4 LINE L1 5487 6032 -816 * 3565 187 17 5 chr3 206625651 206626869 -11410289 + L1PA16 LINE L1 5234 6464 -404 310 234 19 0 chr3 206626875 206626982 -11410176 + (TA)n Simple_repeat Simple_repeat 2 110 0 1452 171 30 43 chr3 206626984 206627289 -11409869 + AluJb SINE Alu 1 301 -11 2179 142 18 38 chr3 206627293 206627687 -11409471 + L1PA16 LINE L1 5781 6166 0 4497 154 27 14 chr3 206627687 206628128 -11409030 + L1PB4 LINE L1 6021 6478 -380 189 0 0 0 chr3 206628128 206628149 -11409009 + (TG)n Simple_repeat Simple_repeat 2 22 0 4497 154 27 14 chr3 206628149 206628532 -11408626 + L1PB4 LINE L1 6478 6855 -3 1412 131 5 0 chr3 206628534 206628733 -11408425 + AluSq SINE Alu 1 200 -113 1789 121 35 0 chr3 206629779 206630036 -11407122 - AluSx SINE Alu -13 299 34 1062 315 63 26 chr3 206630956 206631337 -11405821 + MLT1I LTR MaLR 6 400 -9 188 258 48 0 chr3 206631562 206631624 -11405534 - L2 LINE L2 -218 3054 2990 227 169 39 13 chr3 206632119 206632196 -11404962 + CT-rich Low_complexity Low_complexity 3 81 0 237 306 113 24 chr3 206633339 206633463 -11403695 - MIR3 SINE MIR -5 203 69 980 257 56 23 chr3 206633485 206633827 -11403331 + L1MC4 LINE L1 7549 7901 -141 358 255 73 52 chr3 206634185 206634377 -11402781 - L1MC5 LINE L1 -417 7544 7349 272 332 67 22 chr3 206635171 206635394 -11401764 + HAL1b LINE L1 398 630 -718 804 278 25 72 chr3 206635624 206636027 -11401131 + L1MC4a LINE L1 6414 6797 -1011 211 323 16 0 chr3 206636538 206636600 -11400558 - L2 LINE L2 -5 3267 3205 25 0 0 0 chr3 206637593 206637618 -11399540 + AT_rich Low_complexity Low_complexity 1 25 0 203 194 0 65 chr3 206638109 206638202 -11398956 + CT-rich Low_complexity Low_complexity 4 90 0 5551 189 20 10 chr3 206638268 206639219 -11397939 - L1PA16 LINE L1 -9 6157 5217 555 56 0 0 chr3 206639219 206639290 -11397868 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 1807 157 7 0 chr3 206639294 206639574 -11397584 - AluSx SINE Alu -28 284 3 5551 189 20 10 chr3 206639574 206640724 -11396434 - L1PA16 LINE L1 -951 5215 4032 540 325 43 30 chr3 206641417 206641648 -11395510 - MIR SINE MIR -6 256 23 212 301 36 12 chr3 206641753 206641836 -11395322 + MIR SINE MIR 58 142 -66 2158 151 58 17 chr3 206642119 206642530 -11394628 + MSTA LTR MaLR 1 428 0 229 279 116 12 chr3 206644063 206644149 -11393009 + L2 LINE L2 2262 2356 -958 183 205 0 0 chr3 206645505 206645544 -11391614 + GA-rich Low_complexity Low_complexity 3 41 0 871 162 17 50 chr3 206645804 206645954 -11391204 - MER49 LTR ERV1 -750 173 28 1924 139 49 30 chr3 206645954 206646322 -11390836 - THE1C LTR MaLR 0 375 1 871 162 17 50 chr3 206646322 206646350 -11390808 - MER49 LTR ERV1 -895 28 1 1582 166 31 38 chr3 206646351 206646703 -11390455 - MER49-int LTR ERV1 -3 7095 6374 961 125 39 13 chr3 206646722 206646938 -11390220 - MER49-int LTR ERV1 -598 6160 3908 401 273 98 21 chr3 206647382 206647525 -11389633 + MIR SINE MIR 53 206 -56 556 247 33 71 chr3 206647762 206647944 -11389214 - MIR SINE MIR -43 219 45 737 67 2 11 chr3 206648042 206648151 -11389007 - L1MC/D LINE L1 -604 5638 5530 26 0 0 0 chr3 206648154 206648180 -11388978 + AT_rich Low_complexity Low_complexity 1 26 0 385 356 158 22 chr3 206648515 206649142 -11388016 - L3 LINE CR1 -143 1434 723 819 313 59 16 chr3 206649573 206649880 -11387278 + L3 LINE CR1 1245 1564 -13 326 245 82 41 chr3 206650316 206650414 -11386744 - MLT1I LTR MaLR -154 255 154 314 225 88 25 chr3 206650674 206650754 -11386404 - MIR3 SINE MIR -15 193 109 216 163 47 0 chr3 206651489 206651532 -11385626 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 1296 249 104 21 chr3 206651883 206652502 -11384656 + L1M3e LINE L1 2 1941 -5089 * 12485 195 41 16 chr3 206652484 206656716 -11380442 + L1MA9 LINE L1 2208 6548 0 21 95 0 0 chr3 206657207 206657270 -11379888 + AT_rich Low_complexity Low_complexity 1 63 0 3523 135 48 32 chr3 206657762 206658555 -11378603 + pTR5 LTR ERV1 741 2021 -417 312 214 0 36 chr3 206658559 206658643 -11378515 + LTR30 LTR ERV1 544 624 -98 2325 91 38 0 chr3 206658643 206658982 -11378176 + LTR12 LTR ERV1 362 713 -1 1734 169 3 17 chr3 206659464 206659765 -11377393 + AluJb SINE Alu 1 297 -15 290 264 117 29 chr3 206659805 206660078 -11377080 + L1M3e LINE L1 2131 2427 -4600 335 237 9 0 chr3 206660078 206660192 -11376966 + G-rich Low_complexity Low_complexity 3 117 0 232 222 16 0 chr3 206660277 206660340 -11376818 + L1MCa LINE L1 1345 1408 -5018 386 356 0 15 chr3 206662038 206662173 -11374985 + MIR SINE MIR 20 152 -56 720 325 20 12 chr3 206662189 206662438 -11374720 - MIR SINE MIR -10 252 2 457 294 0 0 chr3 206663747 206663866 -11373292 + MER63A DNA MER1_type 92 210 0 287 268 20 50 chr3 206663956 206664065 -11373093 + MIR SINE MIR 50 155 -62 344 315 94 7 chr3 206665132 206665281 -11371877 + MIR3 SINE MIR 16 177 -31 231 36 0 0 chr3 206665567 206665595 -11371563 + (A)n Simple_repeat Simple_repeat 1 28 0 342 287 100 100 chr3 206666005 206666256 -11370902 + MIR SINE MIR 12 262 0 190 217 0 22 chr3 206667504 206667550 -11369608 + L2 LINE L2 3268 3312 -1 521 337 60 44 chr3 206667823 206668393 -11368765 + L1MEd LINE L1 252 830 -5289 364 256 94 67 chr3 206668396 206668422 -11368736 + MLT1E LTR MaLR 3 27 -627 1591 131 66 56 chr3 206668422 206668727 -11368431 - AluSx SINE Alu -4 308 1 364 256 94 67 chr3 206668727 206668958 -11368200 + MLT1E LTR MaLR 27 373 -281 1190 190 121 46 chr3 206668999 206669346 -11367812 + L1MD3 LINE L1 7623 7995 0 27 0 0 0 chr3 206669423 206669450 -11367708 + AT_rich Low_complexity Low_complexity 1 27 0 21 89 0 0 chr3 206669530 206669586 -11367572 + AT_rich Low_complexity Low_complexity 1 56 0 6126 88 0 0 chr3 206671306 206672230 -11364928 - L1PA14 LINE L1 -1 6160 5218 3031 100 9 5 chr3 206672230 206672669 -11364489 - THE1B-int LTR MaLR -1139 441 1 1821 149 72 29 chr3 206672669 206673018 -11364140 - THE1B LTR MaLR 0 364 1 5234 182 16 0 chr3 206673018 206674052 -11363106 - L1PA14 LINE L1 -951 5195 4145 2372 128 8 22 chr3 206674112 206674472 -11362686 + THE1A LTR MaLR 1 355 0 10867 113 11 1 chr3 206674473 206676034 -11361124 + THE1A-int LTR MaLR 2 1578 -2 2559 107 0 22 chr3 206676036 206676399 -11360759 + THE1A LTR MaLR 1 355 0 571 316 133 34 chr3 206676880 206677411 -11359747 + L2 LINE L2 2579 3170 -143 347 306 71 36 chr3 206677496 206677835 -11359323 - HERV16 LTR ERVL -1669 3985 3676 2388 247 52 5 chr3 206677839 206678422 -11358736 + MER90 LTR ERV1 1 610 -4 297 353 97 13 chr3 206678534 206678843 -11358315 - HERV16 LTR ERVL -1988 3497 3163 2388 332 52 24 chr3 206678884 206679924 -11357234 - HERV16 LTR ERVL -1990 3006 1938 273 241 17 0 chr3 206679950 206680008 -11357150 - MER45A DNA AcHobo -7 171 113 396 248 12 18 chr3 206680128 206680444 -11356714 + G-rich Low_complexity Low_complexity 1 314 0 2180 330 31 33 chr3 206680474 206681578 -11355580 - HERV16 LTR ERVL -3253 1743 579 1197 105 0 0 chr3 206682275 206682427 -11354731 + AluSc SINE Alu 1 152 -157 2131 84 52 0 chr3 206682428 206682714 -11354444 + AluSc SINE Alu 2 302 -7 679 310 40 22 chr3 206682720 206682994 -11354164 - LTR16B LTR ERVL -139 325 47 312 289 109 8 chr3 206683299 206683427 -11353731 - L1ME4a LINE L1 -13 6108 5968 272 228 22 28 chr3 206683617 206683797 -11353361 + (TA)n Simple_repeat Simple_repeat 1 179 0 237 283 114 36 chr3 206684574 206684740 -11352418 + MIR SINE MIR 49 227 -35 213 381 29 38 chr3 206684775 206684880 -11352278 + L2 LINE L2 3169 3272 0 235 359 0 0 chr3 206684940 206685018 -11352140 + MIR SINE MIR 83 160 -102 191 311 33 57 chr3 206685730 206685852 -11351306 + L2 LINE L2 3154 3272 0 24 0 0 0 chr3 206686109 206686133 -11351025 + AT_rich Low_complexity Low_complexity 1 24 0 740 206 33 11 chr3 206686330 206686510 -11350648 - L1MB2 LINE L1 -6 6165 5982 611 210 22 7 chr3 206686735 206686873 -11350285 - MER69 DNA AcHobo -425 801 662 1586 283 78 2 chr3 206686955 206687414 -11349744 - MER69 DNA AcHobo -2026 500 7 1597 195 146 7 chr3 206687463 206687894 -11349264 + L1MC4 LINE L1 7416 7906 -136 238 270 13 94 chr3 206689011 206689106 -11348052 + LTR67 LTR ERVL 412 490 -67 210 37 0 0 chr3 206689106 206689133 -11348025 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 238 270 13 94 chr3 206689133 206689196 -11347962 + LTR67 LTR ERVL 490 557 0 287 314 36 44 chr3 206689197 206689334 -11347824 - MIR3 SINE MIR -60 148 13 29 49 0 16 chr3 206689506 206689530 -11347628 + AT_rich Low_complexity Low_complexity 1 24 -36 1662 171 3 20 chr3 206689530 206689835 -11347323 + AluJo SINE Alu 5 304 -8 29 49 0 16 chr3 206689835 206689871 -11347287 + AT_rich Low_complexity Low_complexity 24 60 0 180 245 41 0 chr3 206689978 206690027 -11347131 - MIR3 SINE MIR -8 200 150 * 658 183 170 0 chr3 206690024 206690177 -11346981 + MER5A DNA MER1_type 11 189 0 180 0 0 0 chr3 206691366 206691386 -11345772 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 215 309 0 25 chr3 206693013 206693094 -11344064 + GA-rich Low_complexity Low_complexity 3 81 0 2800 68 0 3 chr3 206693654 206694019 -11343139 - L1PA13 LINE L1 -2 6161 5798 322 302 204 31 chr3 206696019 206696244 -11340914 + LTR33 LTR ERVL 251 514 -7 22 56 0 0 chr3 206696302 206696338 -11340820 + AT_rich Low_complexity Low_complexity 1 36 0 281 315 41 48 chr3 206696673 206696819 -11340339 + MIR3 SINE MIR 2 146 -62 4854 153 33 9 chr3 206696902 206697747 -11339411 - MER6 DNA MER2_type 0 865 1 546 253 6 66 chr3 206697880 206698046 -11339112 - MIR3 SINE MIR -34 174 19 1591 233 93 32 chr3 206698147 206698620 -11338538 + MLT1D LTR MaLR 1 502 -3 411 388 45 67 chr3 206699091 206699509 -11337649 + L2 LINE L2 2864 3272 0 231 308 26 0 chr3 206699504 206699582 -11337576 - L2 LINE L2 -548 2766 2687 * 239 277 108 0 chr3 206699577 206699660 -11337498 + MIR3 SINE MIR 112 203 -5 220 288 91 0 chr3 206700182 206700248 -11336910 - L2 LINE L2 0 3272 3201 230 336 86 17 chr3 206700253 206700369 -11336789 - MIR SINE MIR -66 142 19 841 250 77 5 chr3 206700378 206700586 -11336572 + MER58A DNA MER1_type 1 223 -1 737 315 25 11 chr3 206700916 206701202 -11335956 + LTR16B LTR ERVL 24 313 -151 477 81 0 35 chr3 206701202 206701289 -11335869 + (TTCC)n Simple_repeat Simple_repeat 2 85 0 808 137 0 0 chr3 206701408 206701525 -11335633 - LTR49-int LTR ERV1 -4227 3893 3777 425 222 0 28 chr3 206701519 206701627 -11335531 - LTR49-int LTR ERV1 -2192 4139 4035 * 3409 137 14 19 chr3 206701826 206702419 -11334739 - LTR49-int LTR ERV1 -4337 3783 3194 1490 126 27 15 chr3 206702418 206702681 -11334477 - LTR49-int LTR ERV1 -4858 3262 2997 * 6553 138 15 31 chr3 206702694 206703887 -11333271 - LTR49-int LTR ERV1 -6427 1693 520 265 233 0 0 chr3 206703914 206703957 -11333201 - 5S rRNA rRNA -71 50 8 1273 234 45 36 chr3 206704037 206704456 -11332702 - LTR49-int LTR ERV1 -7670 450 28 196 361 39 23 chr3 206704647 206704777 -11332381 - MER5A DNA MER1_type -51 138 7 206 228 0 70 chr3 206704890 206704947 -11332211 + MER5A DNA MER1_type 136 188 -1 354 255 178 6 chr3 206707884 206708041 -11329117 - MIR SINE MIR -56 206 23 393 236 104 0 chr3 206708378 206708484 -11328674 - MIR SINE MIR -3 259 143 617 267 76 27 chr3 206708501 206708726 -11328432 + MIR SINE MIR 6 241 -21 284 262 60 0 chr3 206708733 206708817 -11328341 - MIR SINE MIR -99 163 75 2115 114 4 0 chr3 206709035 206709357 -11327801 - AluSq SINE Alu 0 323 1 2346 120 10 10 chr3 206710589 206710972 -11326186 - L1PB2 LINE L1 0 6151 5769 204 222 0 0 chr3 206711512 206711566 -11325592 + T-rich Low_complexity Low_complexity 1 54 0 3196 115 18 4 chr3 206711567 206712063 -11325095 - L1PA6 LINE L1 -5 6149 5647 259 172 35 17 chr3 206712065 206712123 -11325035 + MER5A DNA MER1_type 128 186 -3 571 276 33 11 chr3 206712134 206712315 -11324843 + MER5A DNA MER1_type 1 185 -4 593 251 12 85 chr3 206714283 206714542 -11322616 + L2 LINE L2 3074 3313 0 269 339 9 26 chr3 206714670 206714785 -11322373 - MIR SINE MIR -130 132 20 414 248 26 34 chr3 206714903 206715020 -11322138 - MIR SINE MIR -106 156 41 215 310 35 0 chr3 206715065 206715123 -11322035 - L2 LINE L2 -5 3267 3208 2453 137 68 5 chr3 206715269 206715694 -11321464 + L1PA13 LINE L1 5710 6161 -2 180 304 333 17 chr3 206715854 206716094 -11321064 - L2 LINE L2 -424 2890 2575 2275 116 21 32 chr3 206716429 206716808 -11320350 + THE1C LTR MaLR 1 375 0 9268 118 43 50 chr3 206716809 206717322 -11319836 + THE1C-int LTR MaLR 2 517 -1063 2115 143 0 6 chr3 206717322 206717636 -11319522 + AluSx SINE Alu 1 312 0 9268 118 43 50 chr3 206717636 206718712 -11318446 + THE1C-int LTR MaLR 517 1580 0 2414 117 16 16 chr3 206718712 206719087 -11318071 + THE1C LTR MaLR 1 375 0 792 288 107 48 chr3 206721237 206721405 -11315753 + L1MCa LINE L1 5 162 -5883 2111 127 10 0 chr3 206721405 206721705 -11315453 + AluSx SINE Alu 5 307 -5 792 288 107 48 chr3 206721705 206721969 -11315189 + L1MCa LINE L1 162 369 -5676 1102 252 127 20 chr3 206722135 206722963 -11314195 + L1MCa LINE L1 2043 2971 -3593 * 5396 210 29 64 chr3 206722959 206724530 -11312628 + L1MC3 LINE L1 5721 7235 -550 380 148 0 109 chr3 206724642 206724844 -11312314 + (G)n Simple_repeat Simple_repeat 1 180 0 1659 183 18 28 chr3 206724902 206725290 -11311868 - LOR1a LTR ERV1 -102 395 12 487 225 46 40 chr3 206725669 206725820 -11311338 - L1MEc LINE L1 -6158 238 87 1820 194 43 0 chr3 206725864 206726214 -11310944 + MLT1A1 LTR MaLR 1 365 0 372 365 28 18 chr3 206726248 206726530 -11310628 + L1M4 LINE L1 4777 5061 -1085 3583 261 45 12 chr3 206726594 206727715 -11309443 + L1ME1 LINE L1 35 1191 -5205 3284 255 70 30 chr3 206727729 206729128 -11308030 + L1ME1 LINE L1 1352 2825 -3390 803 238 69 63 chr3 206729128 206729490 -11307668 - MLT1A1 LTR MaLR 0 365 2 3284 255 70 30 chr3 206729490 206730266 -11306892 + L1ME1 LINE L1 2825 3569 -2646 1046 259 60 13 chr3 206730305 206730622 -11306536 + L1ME1 LINE L1 3846 4177 -2038 340 229 0 0 chr3 206730622 206730692 -11306466 - MER52A LTR ERV1 0 1755 1686 * 3231 191 45 146 chr3 206730668 206731970 -11305188 - MER52A LTR ERV1 -125 1195 46 596 274 56 28 chr3 206732213 206732270 -11304888 + L1ME1 LINE L1 4162 4216 -1999 183 42 0 0 chr3 206732270 206732294 -11304864 + (CAAT)n Simple_repeat Simple_repeat 1 24 0 596 274 56 28 chr3 206732294 206732758 -11304400 + L1ME1 LINE L1 4216 4860 -1355 1762 154 40 17 chr3 206732819 206733117 -11304041 + AluSx SINE Alu 1 305 -7 1429 266 86 32 chr3 206733117 206733708 -11303450 - MER76 LTR ERV -65 623 1 963 214 17 8 chr3 206733708 206733942 -11303216 + L1ME1 LINE L1 4865 5100 -1115 783 253 56 16 chr3 206733995 206734244 -11302914 + L1ME1 LINE L1 5083 5341 -874 580 175 10 0 chr3 206734245 206734342 -11302816 - Tigger7 DNA MER2_type -1 2586 2489 * 1172 182 86 0 chr3 206734340 206734560 -11302598 - Tigger7 DNA MER2_type -466 267 29 2670 242 35 46 chr3 206734604 206735446 -11301712 + L1ME1 LINE L1 5384 6218 -17 7564 26 7 0 chr3 206735446 206736924 -11300234 - L1PA5 LINE L1 -11 6143 4661 5631 38 0 0 chr3 206736925 206737607 -11299551 + L1P LINE L1 3985 4666 -1480 367 149 0 0 chr3 206737607 206737674 -11299484 + L1MA10 LINE L1 6264 6330 -4 2106 243 121 1 chr3 206738101 206738880 -11298278 - MER63C DNA MER1_type -2 928 2 667 260 132 61 chr3 206739374 206740117 -11297041 + L1ME4a LINE L1 5320 6115 -6 2992 142 46 35 chr3 206740972 206741563 -11295595 + MER49 LTR ERV1 1 597 -326 1287 170 40 113 chr3 206741667 206742120 -11295038 + L1MC3 LINE L1 7358 7777 -8 10008 193 24 20 chr3 206742138 206745558 -11291600 - L1PA16 LINE L1 -1 6165 2736 21 0 0 0 chr3 206745796 206745817 -11291341 + AT_rich Low_complexity Low_complexity 1 21 0 2033 165 0 0 chr3 206746596 206746905 -11290253 - AluSx SINE Alu -3 309 1 194 352 37 28 chr3 206747090 206747198 -11289960 - MIR SINE MIR -65 143 35 1539 252 28 9 chr3 206747967 206748395 -11288763 - MER63B DNA MER1_type 0 436 1 668 289 92 0 chr3 206748605 206748823 -11288335 + MLT1L LTR MaLR 378 615 0 287 355 15 41 chr3 206750037 206750234 -11286924 + L1MEc LINE L1 107 298 -6098 2007 125 0 10 chr3 206750246 206750535 -11286623 - AluSg SINE Alu -9 301 16 704 283 11 21 chr3 206750876 206751067 -11286091 - MER58A DNA MER1_type -32 192 4 439 285 58 71 chr3 206751380 206751806 -11285352 + L1MEc LINE L1 824 1233 -4982 723 211 0 0 chr3 206751806 206751934 -11285224 + FLAM_C SINE Alu 1 128 -5 439 285 58 71 chr3 206751934 206752239 -11284919 + L1MEc LINE L1 1233 1540 -4675 1356 251 110 18 chr3 206752312 206753709 -11283449 + L1MEc LINE L1 1580 3048 -3167 * 5815 168 19 14 chr3 206753702 206755275 -11281883 + L1MA5 LINE L1 4711 6300 0 395 229 42 17 chr3 206755284 206755396 -11281762 + L1MEc LINE L1 3040 3155 -3055 1616 207 0 3 chr3 206755396 206755701 -11281457 + AluJb SINE Alu 1 304 -8 615 103 0 0 chr3 206755706 206755803 -11281355 + (GGAA)n Simple_repeat Simple_repeat 2 98 0 414 205 37 68 chr3 206755804 206755965 -11281193 + L1MEc LINE L1 3176 3331 -2884 1476 136 14 0 chr3 206755991 206756212 -11280946 - AluSq SINE Alu -89 224 1 727 253 164 32 chr3 206756234 206756760 -11280398 + L1MEc LINE L1 3964 4558 -1657 629 297 90 45 chr3 206757424 206757801 -11279357 - LTR16C LTR ERVL 0 491 98 216 158 0 0 chr3 206758184 206758222 -11278936 + C-rich Low_complexity Low_complexity 1 38 0 216 277 0 48 chr3 206758229 206758312 -11278846 + CT-rich Low_complexity Low_complexity 4 82 0 434 155 0 12 chr3 206758439 206758523 -11278635 + CT-rich Low_complexity Low_complexity 3 85 0 1383 132 128 12 chr3 206758534 206758785 -11278373 + MER49 LTR ERV1 635 914 -9 224 356 50 0 chr3 206758798 206758899 -11278259 - L2 LINE L2 -16 3256 3151 371 179 253 0 chr3 206759662 206759757 -11277401 + MER5A DNA MER1_type 41 159 -30 298 219 175 25 chr3 206759664 206759795 -11277363 - MER5A DNA MER1_type -31 158 4 * 301 253 0 0 chr3 206759812 206759880 -11277278 - MER5B DNA MER1_type -6 172 113 307 252 61 68 chr3 206760134 206760281 -11276877 - MER5A DNA MER1_type 0 189 44 * 326 328 24 16 chr3 206760187 206760312 -11276846 + MER5A DNA MER1_type 63 188 -1 338 266 65 29 chr3 206760402 206760541 -11276617 - MER20B DNA MER1_type -608 175 32 309 293 67 79 chr3 206760721 206760885 -11276273 + MIR SINE MIR 20 181 -81 499 330 100 11 chr3 206761245 206761506 -11275652 + LTR33 LTR ERVL 1 284 -237 228 306 90 56 chr3 206764004 206764148 -11273010 + MIR SINE MIR 34 182 -80 1298 243 32 27 chr3 206764639 206765162 -11271996 + Charlie2 DNA MER1_type 2337 2862 0 864 216 45 6 chr3 206765170 206765346 -11271812 + MER5A DNA MER1_type 1 183 -6 879 302 10 47 chr3 206766331 206766794 -11270364 + L2 LINE L2 2710 3148 -165 2118 125 7 0 chr3 206766794 206767089 -11270069 - AluSg SINE Alu -13 297 1 879 302 10 47 chr3 206767089 206767122 -11270036 + L2 LINE L2 3148 3181 -132 333 264 57 93 chr3 206767133 206767326 -11269832 + LTR33A LTR ERVL 1 186 -337 267 393 8 0 chr3 206768076 206768198 -11268960 + L2 LINE L2 3175 3297 -16 1438 148 13 0 chr3 206768459 206768688 -11268470 - L1PB4 LINE L1 -132 6984 6753 201 39 0 0 chr3 206768688 206768714 -11268444 + (TG)n Simple_repeat Simple_repeat 2 27 0 222 254 16 16 chr3 206768714 206768777 -11268381 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 290 176 12 0 chr3 206768802 206768887 -11268271 + (TA)n Simple_repeat Simple_repeat 1 86 0 228 238 100 0 chr3 206768888 206768968 -11268190 - L1MC4 LINE L1 -1341 6701 6614 * 4035 189 17 23 chr3 206768961 206770445 -11266713 - L1PB4 LINE L1 -367 6749 5275 301 220 0 0 chr3 206770555 206770614 -11266544 - L1PB4 LINE L1 -6905 125 67 588 215 118 0 chr3 206770619 206770763 -11266395 - L1PB4 LINE L1 -6869 161 1 310 203 0 0 chr3 206771311 206771370 -11265788 + L1MDb LINE L1 759 817 -5592 1328 128 0 0 chr3 206771370 206771549 -11265609 + AluSx SINE Alu 1 179 -133 447 332 76 33 chr3 206771629 206771975 -11265183 + L1ME LINE L1 5318 5685 -436 369 0 0 0 chr3 206771975 206772016 -11265142 + (TA)n Simple_repeat Simple_repeat 1 41 0 447 332 76 33 chr3 206772016 206772064 -11265094 + L1ME LINE L1 5685 5729 -392 482 345 30 25 chr3 206772348 206772583 -11264575 - MIR SINE MIR -16 246 11 625 246 72 12 chr3 206772629 206772796 -11264362 - MIR SINE MIR -28 234 58 253 305 69 61 chr3 206773594 206773725 -11263433 - L2 LINE L2 0 3313 3182 2198 128 3 3 chr3 206774040 206774352 -11262806 - AluSp SINE Alu -1 312 1 428 302 53 14 chr3 206775338 206775499 -11261659 + MIR3 SINE MIR 6 169 -39 225 0 0 0 chr3 206776010 206776035 -11261123 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 2281 104 0 0 chr3 206776153 206776450 -11260708 - AluSg SINE Alu -13 297 1 223 286 16 0 chr3 206776742 206776805 -11260353 - MIR3 SINE MIR -52 156 93 304 363 19 25 chr3 206776984 206777144 -11260014 + L3 LINE CR1 1402 1560 -17 217 318 82 36 chr3 206777600 206777710 -11259448 - MIR3 SINE MIR -6 202 88 341 328 72 39 chr3 206778288 206778468 -11258690 - MIR3 SINE MIR 0 208 23 223 352 35 21 chr3 206778484 206778526 -11258632 - MIR3 SINE MIR -12 196 156 2348 109 3 0 chr3 206778526 206778837 -11258321 - AluSx SINE Alu 0 312 1 223 352 35 21 chr3 206778837 206778936 -11258222 - MIR3 SINE MIR -52 156 53 273 320 10 29 chr3 206779477 206779580 -11257578 + MIR SINE MIR 30 130 -78 242 331 7 68 chr3 206779755 206779903 -11257255 + MIR3 SINE MIR 60 198 -10 2322 106 0 6 chr3 206780476 206780788 -11256370 + AluSx SINE Alu 1 310 -2 1059 213 9 18 chr3 206780830 206781051 -11256107 - MER20 DNA MER1_type 0 219 1 244 233 23 15 chr3 206781710 206781843 -11255315 + CT-rich Low_complexity Low_complexity 3 136 0 26 30 0 0 chr3 206782011 206782044 -11255114 + AT_rich Low_complexity Low_complexity 1 33 0 375 277 96 59 chr3 206782906 206783126 -11254032 + MIR SINE MIR 2 229 -33 11332 209 37 28 chr3 206783372 206783997 -11253161 - L1MC3 LINE L1 -9 7776 7158 1882 99 19 4 chr3 206783997 206784260 -11252898 - AluSx SINE Alu 0 312 46 11332 209 37 28 chr3 206784260 206787531 -11249627 - L1MC3 LINE L1 -627 7158 3856 384 272 161 22 chr3 206787710 206787890 -11249268 + MIR SINE MIR 32 236 -26 322 360 27 0 chr3 206788189 206788300 -11248858 - L2 LINE L2 -22 3250 3137 436 328 79 5 chr3 206788350 206788539 -11248619 - MIR SINE MIR -43 219 17 277 289 28 42 chr3 206789545 206789687 -11247471 - MIR SINE MIR -6 256 117 957 116 0 7 chr3 206790291 206790429 -11246729 + THE1B LTR MaLR 226 362 -2 350 121 15 0 chr3 206790716 206790782 -11246376 + (TA)n Simple_repeat Simple_repeat 1 67 0 222 359 54 0 chr3 206790933 206791025 -11246133 + MIR SINE MIR 58 154 -108 1039 68 5 36 chr3 206791392 206791620 -11245538 + (TTCC)n Simple_repeat Simple_repeat 2 398 0 1429 336 45 39 chr3 206791673 206792471 -11244687 + ERVL LTR ERVL 2888 3730 -1836 308 280 107 53 chr3 206792870 206793020 -11244138 + HAL1 LINE L1 2348 2505 -2 2267 84 10 3 chr3 206793151 206793450 -11243708 - AluY SINE Alu -10 301 1 268 238 38 38 chr3 206793597 206793677 -11243481 + MIR SINE MIR 60 139 -69 261 125 0 71 chr3 206793842 206793898 -11243260 + MER4-int LTR ERV1 1111 1162 -5436 262 264 0 0 chr3 206794245 206794298 -11242860 + polypyrimidine Low_complexity Low_complexity 2 54 0 253 150 0 0 chr3 206794841 206794881 -11242277 - MIR SINE MIR -70 192 153 350 177 0 0 chr3 206794894 206794956 -11242202 + L1MA8 LINE L1 5909 5970 -321 354 83 50 0 chr3 206795325 206795385 -11241773 + L1PA7 LINE L1 5790 5852 -302 2332 146 35 2 chr3 206795498 206795896 -11241262 - L1PA14 LINE L1 -152 6009 5599 21 0 0 0 chr3 206846908 206846929 -11190229 + AT_rich Low_complexity Low_complexity 1 21 0 2057 48 0 0 chr3 206848082 206848333 -11188825 - L1PA4 LINE L1 -3 6152 5902 2281 106 0 0 chr3 206848533 206848834 -11188324 - AluSg1 SINE Alu -8 301 1 391 299 99 20 chr3 206850774 206850975 -11186183 + MIR SINE MIR 20 236 -26 230 331 128 14 chr3 206851586 206851734 -11185424 + L3 LINE CR1 1287 1451 -126 523 202 65 8 chr3 206852442 206852566 -11184592 + MIR SINE MIR 67 197 -65 2198 102 0 49 chr3 206852984 206853309 -11183849 - AluSx SINE Alu -3 309 1 22 0 0 0 chr3 206854567 206854589 -11182569 + AT_rich Low_complexity Low_complexity 1 22 0 357 285 134 28 chr3 206855712 206855891 -11181267 + MIR SINE MIR 65 262 0 573 339 64 29 chr3 206856303 206856735 -11180423 - L2 LINE L2 -228 3044 2593 2241 121 0 0 chr3 206856736 206857041 -11180117 + AluSx SINE Alu 1 305 -7 300 346 0 30 chr3 206857466 206857567 -11179591 + MIR3 SINE MIR 70 167 -41 300 148 30 215 chr3 206858339 206858474 -11178684 + MLT-int LTR MaLR 42 151 -1500 283 75 0 0 chr3 206858506 206858546 -11178612 + MADE1 DNA Mariner 4 43 -37 189 0 0 0 chr3 206859076 206859097 -11178061 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 261 325 102 19 chr3 206860238 206860395 -11176763 - MIR SINE MIR -71 191 22 2339 100 0 7 chr3 206860596 206860906 -11176252 - AluSg SINE Alu -1 309 2 21 0 0 0 chr3 206864023 206864044 -11173114 + AT_rich Low_complexity Low_complexity 1 21 0 2003 109 33 4 chr3 206864419 206864747 -11172411 + AluSg SINE Alu 1 336 0 243 203 0 72 chr3 206865692 206865761 -11171397 - MIR SINE MIR -58 204 141 442 317 33 22 chr3 206866381 206866564 -11170594 + MIR SINE MIR 4 188 -74 203 303 46 99 chr3 206867765 206867917 -11169241 - MIR3 SINE MIR -7 201 58 294 349 8 23 chr3 206868714 206868843 -11168315 - MIR SINE MIR -65 143 17 400 298 92 86 chr3 206869578 206870239 -11166919 + L1ME4a LINE L1 5455 6119 -2 21 71 0 0 chr3 206870249 206870291 -11166867 + AT_rich Low_complexity Low_complexity 1 42 0 306 310 183 18 chr3 206870394 206870668 -11166490 + L1ME LINE L1 5325 5643 -478 403 294 39 20 chr3 206871186 206871339 -11165819 + MIR SINE MIR 107 262 0 203 320 131 34 chr3 206872387 206872593 -11164565 - L2 LINE L2 -447 2867 2642 388 230 14 0 chr3 206872666 206872740 -11164418 - MER2 DNA MER2_type -2 343 269 396 130 0 0 chr3 206873175 206873244 -11163914 + (CA)n Simple_repeat Simple_repeat 2 70 0 243 272 101 57 chr3 206873493 206873651 -11163507 + MIR SINE MIR 77 241 -21 439 197 226 22 chr3 206874055 206874192 -11162966 - MIR3 SINE MIR -37 171 7 371 226 74 54 chr3 206874519 206874692 -11162466 - MER5A DNA MER1_type 0 189 3 180 152 0 0 chr3 206876187 206876220 -11160938 + T-rich Low_complexity Low_complexity 1 33 0 189 0 0 0 chr3 206879144 206879165 -11157993 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 202 114 29 0 chr3 206879170 206879205 -11157953 + (TG)n Simple_repeat Simple_repeat 1 36 0 519 194 10 0 chr3 206881731 206881829 -11155329 - MER94 DNA DNA -34 100 2 434 315 62 110 chr3 206886590 206886882 -11150276 - L2 LINE L2 0 3272 2995 326 289 9 35 chr3 206886960 206887074 -11150084 - L2 LINE L2 -495 2819 2709 198 118 0 0 chr3 206887182 206887216 -11149942 + (A)n Simple_repeat Simple_repeat 1 34 0 610 254 94 14 chr3 206887309 206887522 -11149636 + MIR SINE MIR 18 247 -15 189 0 0 0 chr3 206887610 206887631 -11149527 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 23 0 0 0 chr3 206887792 206887815 -11149343 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr3 206888060 206888087 -11149071 + AT_rich Low_complexity Low_complexity 1 27 0 30 0 0 0 chr3 206888210 206888240 -11148918 + AT_rich Low_complexity Low_complexity 1 30 0 390 234 20 104 chr3 206889191 206889411 -11147747 - MIR3 SINE MIR -4 204 4 2208 109 3 0 chr3 206889723 206890017 -11147141 + AluSp SINE Alu 1 295 -18 739 252 25 13 chr3 206891040 206891199 -11145959 + MER45A DNA AcHobo 3 163 -15 243 0 0 0 chr3 206892747 206892774 -11144384 + (T)n Simple_repeat Simple_repeat 1 27 0 253 336 9 69 chr3 206894463 206894579 -11142579 - L3 LINE CR1 0 1577 1469 22 70 0 0 chr3 206895651 206895694 -11141464 + AT_rich Low_complexity Low_complexity 1 43 0 27 106 0 0 chr3 206895739 206895843 -11141315 + AT_rich Low_complexity Low_complexity 1 104 0 2013 137 3 13 chr3 206897282 206897582 -11139576 + AluSg SINE Alu 1 297 -13 325 283 105 47 chr3 206897784 206897989 -11139169 + MIR3 SINE MIR 9 216 -46 22 0 0 0 chr3 206898131 206898153 -11139005 + AT_rich Low_complexity Low_complexity 1 22 0 239 236 230 46 chr3 206898358 206898532 -11138626 - MIR SINE MIR -56 206 1 294 314 57 86 chr3 206899221 206899396 -11137762 + MIR SINE MIR 17 186 -76 219 319 0 0 chr3 206900443 206900490 -11136668 + L2 LINE L2 3208 3254 -18 22 70 0 0 chr3 206901642 206901685 -11135473 + AT_rich Low_complexity Low_complexity 1 43 0 291 281 21 10 chr3 206901726 206901822 -11135336 + CT-rich Low_complexity Low_complexity 4 100 0 420 292 68 25 chr3 206902039 206902200 -11134958 - MER102b DNA MER1_type -1 340 173 28 0 0 0 chr3 206902200 206902228 -11134930 + AT_rich Low_complexity Low_complexity 1 28 0 370 254 31 23 chr3 206902250 206902380 -11134778 - MER102b DNA MER1_type -180 161 31 22 35 0 0 chr3 206902652 206902681 -11134477 + AT_rich Low_complexity Low_complexity 1 29 0 1321 163 128 27 chr3 206903275 206903558 -11133600 - AluJb SINE Alu 0 309 1 247 286 29 0 chr3 206903774 206903844 -11133314 + CT-rich Low_complexity Low_complexity 3 74 0 282 56 0 0 chr3 206904674 206904710 -11132448 + (A)n Simple_repeat Simple_repeat 1 36 0 408 313 118 0 chr3 206905509 206905704 -11131454 + MIR SINE MIR 9 226 -36 309 118 0 0 chr3 206905970 206906021 -11131137 + (T)n Simple_repeat Simple_repeat 1 51 0 2342 87 3 0 chr3 206906212 206906512 -11130646 + AluSg1 SINE Alu 1 301 -8 228 358 108 11 chr3 206907012 206907188 -11129970 + MIR SINE MIR 19 211 -51 187 350 248 8 chr3 206908182 206908299 -11128859 + MIR3 SINE MIR 16 160 -48 247 282 13 13 chr3 206909595 206909673 -11127485 - MIR SINE MIR -81 127 50 1300 122 0 0 chr3 206910000 206910181 -11126977 - AluSg/x SINE Alu -2 310 130 1673 134 17 0 chr3 206910181 206910420 -11126738 - AluSx SINE Alu -69 243 1 901 199 39 19 chr3 206911145 206911351 -11125807 + MER6B DNA MER2_type 1 210 0 306 0 0 0 chr3 206912450 206912484 -11124674 + (TG)n Simple_repeat Simple_repeat 2 35 0 1363 128 31 0 chr3 206912518 206912714 -11124444 - AluSg/x SINE Alu -3 307 106 2071 118 0 0 chr3 206912833 206913112 -11124046 + AluSx SINE Alu 17 295 -17 231 36 0 0 chr3 206913114 206913142 -11124016 + (CAT)n Simple_repeat Simple_repeat 2 29 0 347 274 10 29 chr3 206913835 206913937 -11123221 + MIR3 SINE MIR 92 191 -17 236 146 0 21 chr3 206913937 206913985 -11123173 + (TCC)n Simple_repeat Simple_repeat 2 48 0 1094 206 82 19 chr3 206914003 206914260 -11122898 - AluJo SINE Alu -39 273 1 3423 177 119 24 chr3 206914532 206915319 -11121839 + MER21B LTR ERV1 1 862 -1 305 316 0 0 chr3 206915458 206915537 -11121621 + L2 LINE L2 3233 3311 -2 300 213 19 83 chr3 206915538 206915646 -11121512 + MIR3 SINE MIR 104 204 -4 1787 165 0 11 chr3 206915738 206916023 -11121135 + AluSx SINE Alu 1 282 -30 1253 20 0 0 chr3 206916333 206916480 -11120678 + L1PA4 LINE L1 6007 6153 -2 859 203 102 129 chr3 206916955 206917018 -11120140 - LTR36 LTR ERV1 -82 529 466 1914 115 0 50 chr3 206917018 206917339 -11119819 + AluSx SINE Alu 1 305 -7 859 203 102 129 chr3 206917339 206917817 -11119341 - LTR36 LTR ERV1 -145 466 3 1334 266 93 45 chr3 206918834 206919563 -11117595 + L2 LINE L2 2543 3296 -17 2163 125 0 7 chr3 206919967 206920271 -11116887 - AluSp SINE Alu -11 302 1 303 140 0 0 chr3 206921428 206921478 -11115680 + (TATG)n Simple_repeat Simple_repeat 1 50 0 302 227 23 30 chr3 206922103 206922235 -11114923 + L1M4 LINE L1 2956 3086 -3060 5303 174 61 47 chr3 206922255 206923863 -11113295 + L1MA6 LINE L1 4140 5724 -576 2666 23 7 3 chr3 206923863 206924173 -11112985 + AluY SINE Alu 1 311 0 5303 174 61 47 chr3 206924173 206924232 -11112926 + L1MA6 LINE L1 5724 5781 -519 1967 158 3 13 chr3 206924232 206924535 -11112623 + AluJb SINE Alu 1 300 -12 5303 174 61 47 chr3 206924535 206925011 -11112147 + L1MA6 LINE L1 5781 6300 0 22 0 0 0 chr3 206925148 206925170 -11111988 + AT_rich Low_complexity Low_complexity 1 22 0 1981 230 157 11 chr3 206925170 206925875 -11111283 + L1ME1 LINE L1 5359 6166 0 969 218 14 0 chr3 206926590 206926801 -11110357 - L1PB4 LINE L1 0 6156 5943 723 119 110 0 chr3 206926822 206926940 -11110218 - AluSg SINE Alu -179 131 1 772 160 0 0 chr3 206926941 206927072 -11110086 - L1PB4 LINE L1 -203 5953 5823 294 261 92 70 chr3 206927521 206927663 -11109495 + MIR SINE MIR 9 153 -109 713 198 145 66 chr3 206927664 206927967 -11109191 + MER46C DNA MER2_type 1 327 -11 216 0 0 0 chr3 206930281 206930305 -11106853 + (T)n Simple_repeat Simple_repeat 1 24 0 2387 94 0 3 chr3 206930464 206930773 -11106385 + AluY SINE Alu 1 308 -3 299 266 40 57 chr3 206932766 206932890 -11104268 + MIR3 SINE MIR 74 195 -13 250 265 0 0 chr3 206934419 206934468 -11102690 + MER5A DNA MER1_type 1 49 -140 27 81 0 0 chr3 206934689 206934751 -11102407 + AT_rich Low_complexity Low_complexity 1 62 0 1461 227 30 28 chr3 206934993 206935354 -11101804 - MLT1A1 LTR MaLR 0 365 4 1231 196 67 61 chr3 206935728 206936070 -11101088 - MER2 DNA MER2_type 0 344 1 21 0 0 0 chr3 206936706 206936727 -11100431 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr3 206936834 206936876 -11100282 + AT_rich Low_complexity Low_complexity 1 42 0 317 171 469 0 chr3 206937076 206937187 -11099971 + MER96 DNA MER1_type? 11 173 -2 1501 206 48 0 chr3 206937197 206937488 -11099670 - AluJo SINE Alu -7 305 1 2460 240 30 11 chr3 206937612 206937881 -11099277 + MER82 DNA MER2_type 7 269 -384 297 0 0 0 chr3 206937881 206937914 -11099244 + (CA)n Simple_repeat Simple_repeat 2 34 0 2460 240 30 11 chr3 206937914 206938277 -11098881 + MER82 DNA MER2_type 269 651 -2 250 242 76 0 chr3 206938824 206938890 -11098268 - Charlie7 DNA MER1_type -2535 77 7 213 88 0 0 chr3 206939551 206939574 -11097584 + (TTA)n Simple_repeat Simple_repeat 3 28 -8 1920 108 4 7 chr3 206939574 206939851 -11097307 - AluSx SINE Alu -36 276 1 213 88 0 0 chr3 206939851 206939861 -11097297 + (TTA)n Simple_repeat Simple_repeat 27 36 0 207 374 183 0 chr3 206940517 206940648 -11096510 - MIR3 SINE MIR -9 199 45 764 125 8 8 chr3 206940762 206940882 -11096276 - FLAM_A SINE Alu -13 120 1 310 212 0 0 chr3 206941148 206941214 -11095944 - MER116 DNA Mariner -12 68 3 1922 94 0 120 chr3 206941254 206941595 -11095563 - AluSg SINE Alu 0 300 1 877 77 0 8 chr3 206941678 206941795 -11095363 - AluSg SINE Alu -194 116 1 187 271 17 17 chr3 206942639 206942698 -11094460 - MER5A DNA MER1_type -97 92 34 281 159 16 0 chr3 206943067 206943130 -11094028 + (TG)n Simple_repeat Simple_repeat 2 65 0 188 346 148 0 chr3 206944731 206944812 -11092346 + L2 LINE L2 3143 3235 -37 1065 201 37 18 chr3 206945143 206945160 -11091998 + MER58B DNA MER1_type 64 79 -2341 435 38 0 0 chr3 206945160 206945213 -11091945 + (TA)n Simple_repeat Simple_repeat 1 53 0 2343 97 0 0 chr3 206945213 206945513 -11091645 - AluSg SINE Alu -10 300 1 1065 201 37 18 chr3 206945513 206945767 -11091391 + MER58B DNA MER1_type 78 341 0 22 88 0 0 chr3 206947188 206947245 -11089913 + AT_rich Low_complexity Low_complexity 1 57 0 21 36 0 0 chr3 206948339 206948367 -11088791 + AT_rich Low_complexity Low_complexity 1 28 0 217 331 163 6 chr3 206948744 206948904 -11088254 - MIR SINE MIR -6 256 72 258 338 115 7 chr3 206949577 206949725 -11087433 + MIR3 SINE MIR 34 197 -11 225 233 0 33 chr3 206951237 206951297 -11085861 + GA-rich Low_complexity Low_complexity 3 60 0 2326 104 0 0 chr3 206952096 206952395 -11084763 + AluSx SINE Alu 1 299 -13 2459 73 0 3 chr3 206953026 206953327 -11083831 - AluSq SINE Alu -13 300 1 426 228 110 39 chr3 206954056 206954183 -11082975 - L2 LINE L2 0 3272 3137 249 326 163 0 chr3 206956693 206956822 -11080336 + MIR3 SINE MIR 50 199 -9 2372 87 0 0 chr3 206957680 206957978 -11079180 + AluY SINE Alu 1 298 -13 356 265 86 20 chr3 206958419 206958578 -11078580 - MIR3 SINE MIR -63 145 3 448 285 127 0 chr3 206958806 206958971 -11078187 + MIR SINE MIR 60 245 -17 281 209 75 19 chr3 206959096 206959178 -11077980 - MIR SINE MIR -46 162 74 28 0 0 0 chr3 206961610 206961638 -11075520 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr3 206962408 206962442 -11074716 + AT_rich Low_complexity Low_complexity 1 34 0 759 236 148 7 chr3 206963288 206963598 -11073560 + Looper DNA T2_type 32 385 -1173 1027 198 169 4 chr3 206963598 206963871 -11073287 + MER33 DNA MER1_type 1 318 -6 2998 215 103 30 chr3 206963877 206964941 -11072217 + Looper DNA T2_type 360 1536 -22 230 268 42 0 chr3 206965555 206965626 -11071532 + MIR3 SINE MIR 82 155 -53 1630 146 4 4 chr3 206966280 206966534 -11070624 - AluJo SINE Alu -58 254 1 293 117 17 0 chr3 206967054 206967114 -11070044 + (TA)n Simple_repeat Simple_repeat 2 62 0 21 0 0 0 chr3 206967899 206967920 -11069238 + AT_rich Low_complexity Low_complexity 1 21 0 424 271 106 7 chr3 206968215 206968366 -11068792 - MIR3 SINE MIR -8 200 35 256 333 0 12 chr3 206968605 206968686 -11068472 + MIR3 SINE MIR 115 194 -14 279 268 60 93 chr3 206969098 206969281 -11067877 - MIR SINE MIR -25 237 61 185 250 271 0 chr3 206969619 206969715 -11067443 + L2 LINE L2 3184 3305 -8 242 348 22 22 chr3 206969736 206969874 -11067284 + L2 LINE L2 2918 3055 -217 241 191 32 0 chr3 206970063 206970126 -11067032 - LTR66 LTR ERVL -147 463 399 423 0 0 0 chr3 206970679 206970726 -11066432 + (TA)n Simple_repeat Simple_repeat 2 48 0 602 289 103 40 chr3 206971873 206972704 -11064454 + L1MEc LINE L1 1603 2467 -3748 300 264 200 26 chr3 206972705 206972860 -11064298 + L1MEc LINE L1 2504 2685 -3530 2307 104 0 0 chr3 206972952 206973251 -11063907 + AluSx SINE Alu 1 299 -13 2444 73 0 3 chr3 206973882 206974183 -11062975 - AluSq SINE Alu -13 300 1 419 228 110 39 chr3 206974913 206975040 -11062118 - L2 LINE L2 0 3272 3137 247 326 163 0 chr3 206977550 206977679 -11059479 + MIR3 SINE MIR 50 199 -9 2364 87 0 0 chr3 206978537 206978835 -11058323 + AluY SINE Alu 1 298 -13 352 265 86 20 chr3 206979276 206979435 -11057723 - MIR3 SINE MIR -63 145 3 21 71 0 0 chr3 206979789 206979831 -11057327 + AT_rich Low_complexity Low_complexity 1 42 0 213 39 0 0 chr3 206980112 206980138 -11057020 + (TA)n Simple_repeat Simple_repeat 2 27 0 2459 73 0 0 chr3 206980138 206980438 -11056720 - AluY SINE Alu -11 300 1 1690 196 140 21 chr3 206980550 206980589 -11056569 - MLT2B1 LTR ERVL 0 520 487 483 18 0 0 chr3 206980589 206980645 -11056513 + (TA)n Simple_repeat Simple_repeat 1 56 0 1690 196 140 21 chr3 206980645 206981070 -11056088 - MLT2B1 LTR ERVL -33 487 1 180 374 0 0 chr3 206981070 206981153 -11056005 - MIR SINE MIR -127 135 53 220 309 57 57 chr3 206982025 206982148 -11055010 - MIR SINE MIR -68 140 18 346 295 72 72 chr3 206983013 206983318 -11053840 - LTR16A1 LTR ERVL -6 451 147 21 0 0 0 chr3 206983512 206983533 -11053625 + AT_rich Low_complexity Low_complexity 1 21 0 290 346 0 10 chr3 206983651 206983752 -11053406 + MIR SINE MIR 24 123 -139 186 245 61 0 chr3 206983806 206983855 -11053303 + L2 LINE L2 3216 3267 -5 992 283 48 83 chr3 206983888 206984549 -11052609 - L2 LINE L2 0 3313 2675 21 82 0 0 chr3 206985586 206985635 -11051523 + AT_rich Low_complexity Low_complexity 1 49 0 415 258 86 68 chr3 206986822 206986985 -11050173 + MER91B DNA MER1_type 14 179 -11 986 165 12 24 chr3 206987120 206987290 -11049868 - FRAM SINE Alu -9 167 1 395 364 20 20 chr3 206988297 206988448 -11048710 + L2 LINE L2 3117 3267 -5 536 293 148 31 chr3 206990279 206991266 -11045892 + L1MEc LINE L1 1603 2685 -3530 1830 144 27 7 chr3 206991356 206991673 -11045485 + AluSq SINE Alu 1 323 0 261 273 62 48 chr3 206991676 206991789 -11045369 + L1MEc LINE L1 2920 3030 -3185 1574 150 42 15 chr3 206991789 206992049 -11045109 + AluJo SINE Alu 15 281 -31 327 49 0 0 chr3 206992049 206992090 -11045068 + (CA)n Simple_repeat Simple_repeat 1 41 0 261 273 62 48 chr3 206992090 206992429 -11044729 + L1MEc LINE L1 3029 3379 -2836 25 83 0 0 chr3 206992439 206992499 -11044659 + AT_rich Low_complexity Low_complexity 1 60 0 429 350 5 10 chr3 206992526 206992732 -11044426 + L1MEc LINE L1 3404 3608 -2607 3938 273 91 20 chr3 206992756 206994942 -11042216 + L1MC3 LINE L1 1884 4402 -2024 2156 81 0 66 chr3 206994942 206995262 -11041896 + AluY SINE Alu 1 299 -12 3938 273 91 20 chr3 206995262 206995905 -11041253 + L1MC3 LINE L1 4402 4998 -1428 5419 223 51 17 chr3 206995906 206997713 -11039445 + L1MC3 LINE L1 5077 5677 -749 2556 65 3 0 chr3 206997765 206998075 -11039083 + AluY SINE Alu 1 311 0 1293 245 50 58 chr3 206998083 206998507 -11038651 + L1ME LINE L1 3438 3857 -2289 2501 54 0 6 chr3 206998507 206998820 -11038338 + AluY SINE Alu 1 311 0 1293 245 50 58 chr3 206998820 206999011 -11038147 + L1ME LINE L1 3857 4048 -2098 468 319 27 5 chr3 206999116 206999304 -11037854 + L1ME LINE L1 5513 5704 -417 246 105 0 0 chr3 206999548 206999586 -11037572 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 254 233 82 14 chr3 207000817 207000890 -11036268 - MIR SINE MIR -118 144 67 240 35 0 0 chr3 207001089 207001118 -11036040 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 402 293 32 38 chr3 207001346 207001503 -11035655 + MER5A DNA MER1_type 15 170 -19 337 191 83 60 chr3 207001918 207002002 -11035156 + MER5B DNA MER1_type 90 175 -3 282 286 51 10 chr3 207003017 207003115 -11034043 + MIR SINE MIR 80 181 -81 241 306 127 18 chr3 207003342 207003527 -11033631 + MIR SINE MIR 2 216 -17 23 0 0 0 chr3 207003530 207003553 -11033605 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr3 207004129 207004159 -11032999 + AT_rich Low_complexity Low_complexity 1 30 0 2208 135 33 0 chr3 207004313 207004675 -11032483 - L1MC2 LINE L1 -361 5983 5610 1470 180 78 45 chr3 207004675 207005008 -11032150 + MER2 DNA MER2_type 2 345 0 32 0 0 0 chr3 207005008 207005040 -11032118 + AT_rich Low_complexity Low_complexity 1 32 0 2312 227 24 14 chr3 207005040 207005967 -11031191 - L1MC2 LINE L1 -743 5403 4663 395 172 0 50 chr3 207005947 207006046 -11031112 - L1MC2 LINE L1 -2178 3968 3875 * 7018 57 12 0 chr3 207006047 207007133 -11030025 - L1PA7 LINE L1 -2 6152 5062 1052 193 19 28 chr3 207007133 207007345 -11029813 - AluJo SINE Alu -16 296 87 822 202 0 6 chr3 207007345 207007513 -11029645 - L1MC2 LINE L1 -2268 3878 3712 182 361 60 0 chr3 207007755 207007838 -11029320 - L2 LINE L2 -22 3291 3204 369 346 51 32 chr3 207008412 207008568 -11028590 - L2 LINE L2 -2 3270 3112 188 326 0 0 chr3 207008560 207008609 -11028549 + L2 LINE L2 3256 3304 -9 * 468 239 0 34 chr3 207008616 207008733 -11028425 - L2 LINE L2 -1 3312 3200 4891 100 112 0 chr3 207009202 207009945 -11027213 - LTR12 LTR ERV1 0 826 1 302 32 79 16 chr3 207010864 207010927 -11026231 + T-rich Low_complexity Low_complexity 4 70 0 225 65 0 0 chr3 207012332 207012363 -11024795 + (CA)n Simple_repeat Simple_repeat 2 32 0 272 264 85 8 chr3 207012373 207012502 -11024656 - L1ME4a LINE L1 -14 6107 5969 2307 89 7 0 chr3 207012894 207013185 -11023973 - AluSp SINE Alu -20 293 1 2299 116 0 0 chr3 207013396 207013697 -11023461 + AluSx SINE Alu 1 301 -11 347 309 108 7 chr3 207014397 207014536 -11022622 - MIR SINE MIR -53 209 57 390 229 28 37 chr3 207015743 207015852 -11021306 + MIR SINE MIR 35 142 -120 308 277 87 12 chr3 207015861 207016054 -11021104 + L1ME1 LINE L1 5950 6151 -15 342 0 0 0 chr3 207016315 207016353 -11020805 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 356 350 32 60 chr3 207016372 207016752 -11020406 - L2 LINE L2 -38 3234 2866 183 304 0 0 chr3 207017596 207017642 -11019516 + MIR3 SINE MIR 160 205 -3 183 217 130 0 chr3 207017746 207017815 -11019343 - MIR3 SINE MIR 0 208 131 297 343 135 17 chr3 207018004 207018182 -11018976 + MIR SINE MIR 58 256 -6 441 0 0 0 chr3 207018288 207018337 -11018821 + (CA)n Simple_repeat Simple_repeat 1 49 0 216 318 68 0 chr3 207018987 207019075 -11018083 + MIR SINE MIR 49 142 -66 1469 255 58 45 chr3 207019428 207019619 -11017539 - L2 LINE L2 -2 3311 3124 1996 114 4 0 chr3 207019619 207019890 -11017268 + AluSp SINE Alu 42 313 0 1469 255 58 45 chr3 207019890 207020445 -11016713 - L2 LINE L2 -189 3124 2552 229 279 19 96 chr3 207020509 207020613 -11016545 - L2 LINE L2 -165 3107 3012 585 267 34 17 chr3 207021373 207021549 -11015609 + MER97b DNA MER1_type? 1 179 -874 324 277 77 21 chr3 207021901 207022056 -11015102 + MIR SINE MIR 35 191 -62 543 129 29 29 chr3 207023123 207023262 -11013896 + CT-rich Low_complexity Low_complexity 4 142 0 359 143 26 0 chr3 207023254 207023331 -11013827 + C-rich Low_complexity Low_complexity 2 80 0 * 722 184 0 0 chr3 207023332 207023446 -11013712 - FLAM_C SINE Alu -19 114 1 374 299 146 15 chr3 207023622 207023759 -11013399 + MIR3 SINE MIR 33 187 -21 291 319 60 48 chr3 207025922 207026088 -11011070 - MIR3 SINE MIR -34 174 7 23 0 0 0 chr3 207028281 207028304 -11008854 + AT_rich Low_complexity Low_complexity 1 23 0 206 290 50 20 chr3 207028361 207028461 -11008697 + MIR SINE MIR 41 143 -65 285 306 102 0 chr3 207028677 207028775 -11008383 - MER91A DNA MER1_type -3 193 86 239 306 16 0 chr3 207028775 207028837 -11008321 - MER91A DNA MER1_type -24 172 110 279 317 70 28 chr3 207028884 207029026 -11008132 + MIR3 SINE MIR 40 187 -21 2156 99 7 11 chr3 207029632 207029941 -11007217 + AluSx SINE Alu 1 308 0 274 325 9 44 chr3 207030076 207030190 -11006968 - MIR SINE MIR -64 144 35 351 0 0 0 chr3 207031374 207031413 -11005745 + (TG)n Simple_repeat Simple_repeat 2 40 0 856 209 33 0 chr3 207031476 207031629 -11005529 + FAM SINE Alu 1 158 -17 225 0 0 0 chr3 207031633 207031658 -11005500 + (GA)n Simple_repeat Simple_repeat 2 26 0 729 181 80 119 chr3 207032429 207032631 -11004527 - MER20 DNA MER1_type 0 219 25 2161 80 59 7 chr3 207032631 207032920 -11004238 - AluSq SINE Alu -9 304 1 729 181 80 119 chr3 207032920 207032943 -11004215 - MER20 DNA MER1_type -194 25 3 2334 30 4 0 chr3 207033162 207033453 -11003705 - L1PA3 LINE L1 0 6155 5888 349 304 24 8 chr3 207033612 207033737 -11003421 + L2 LINE L2 2467 2593 -721 477 0 0 0 chr3 207033792 207033845 -11003313 + (TG)n Simple_repeat Simple_repeat 2 54 0 931 294 90 42 chr3 207033914 207034394 -11002764 + L2 LINE L2 2811 3313 0 254 302 87 99 chr3 207034466 207034718 -11002440 + L2 LINE L2 3020 3268 -4 2280 104 0 0 chr3 207034875 207035172 -11001986 - AluSx SINE Alu -15 297 1 309 186 0 43 chr3 207035474 207035544 -11001614 + MER5B DNA MER1_type 1 67 -111 2288 100 0 22 chr3 207036087 207036406 -11000752 - AluSx SINE Alu 0 312 1 483 339 81 16 chr3 207036854 207037102 -11000056 - L3 LINE CR1 -16 1561 1298 2195 121 3 0 chr3 207037378 207037675 -10999483 - AluSx SINE Alu -14 298 1 223 262 135 48 chr3 207038172 207038298 -10998860 + MIR SINE MIR 116 252 -10 195 391 17 9 chr3 207038313 207038428 -10998730 + L2 LINE L2 3197 3312 -1 298 287 69 0 chr3 207038443 207038544 -10998614 + L1ME3A LINE L1 6028 6135 -35 229 415 11 0 chr3 207038588 207038682 -10998476 - L3 LINE CR1 -74 1503 1409 227 209 0 33 chr3 207039271 207039362 -10997796 + (TG)n Simple_repeat Simple_repeat 2 89 0 2247 98 47 0 chr3 207039635 207039931 -10997227 + AluSx SINE Alu 1 310 -2 1264 22 16 28 chr3 207039944 207040126 -10997032 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 7410 45 0 11 chr3 207042044 207042962 -10994196 - L1PA7 LINE L1 0 6154 5221 207 0 0 0 chr3 207044031 207044054 -10993104 + (TG)n Simple_repeat Simple_repeat 2 24 0 342 98 0 0 chr3 207044106 207044157 -10993001 + (TA)n Simple_repeat Simple_repeat 2 52 0 360 193 28 0 chr3 207044195 207044304 -10992854 + (TA)n Simple_repeat Simple_repeat 2 113 0 323 314 131 0 chr3 207044457 207044610 -10992548 + MIR3 SINE MIR 31 203 -5 206 174 22 0 chr3 207045177 207045223 -10991935 + T-rich Low_complexity Low_complexity 2 48 0 223 163 61 0 chr3 207045246 207045295 -10991863 + L2 LINE L2 3213 3264 -8 230 248 148 40 chr3 207046067 207046168 -10990990 + MIR3 SINE MIR 15 126 -82 2487 60 6 19 chr3 207047422 207047757 -10989401 - AluY SINE Alu 0 331 1 21 0 0 0 chr3 207048192 207048213 -10988945 + AT_rich Low_complexity Low_complexity 1 21 0 2353 117 64 3 chr3 207050183 207050526 -10986632 - THE1B LTR MaLR 0 364 1 316 254 127 16 chr3 207050863 207050989 -10986169 + MER103 DNA DNA 17 156 -10 1323 261 194 26 chr3 207051029 207051530 -10985628 + MLT1E LTR MaLR 1 585 -8 1474 138 35 69 chr3 207051553 207051843 -10985315 - AluJo SINE Alu -32 280 1 190 265 143 61 chr3 207052316 207052463 -10984695 + L3 LINE CR1 1059 1217 -360 2035 143 0 13 chr3 207053075 207053382 -10983776 + AluSx SINE Alu 1 303 -9 2032 132 0 22 chr3 207053613 207053924 -10983234 + AluSx SINE Alu 1 304 -8 2333 95 0 0 chr3 207054216 207054510 -10982648 + AluSg SINE Alu 2 295 -15 2418 237 93 52 chr3 207054615 207055434 -10981724 + MER21B LTR ERV1 1 852 -11 203 376 11 11 chr3 207056093 207056186 -10980972 + MIR SINE MIR 21 113 -149 254 370 82 37 chr3 207057189 207057459 -10979699 + L2 LINE L2 2991 3272 0 318 288 108 29 chr3 207057667 207057806 -10979352 + MIR3 SINE MIR 38 187 -21 1337 51 0 0 chr3 207057866 207058022 -10979136 + L1PA4 LINE L1 5997 6152 -3 318 342 92 13 chr3 207058209 207058361 -10978797 - MIR3 SINE MIR -8 200 37 23 0 0 0 chr3 207059111 207059134 -10978024 + AT_rich Low_complexity Low_complexity 1 23 0 46 0 0 0 chr3 207059527 207059573 -10977585 + AT_rich Low_complexity Low_complexity 1 46 0 241 253 99 33 chr3 207059590 207059681 -10977477 + L1ME4a LINE L1 5567 5663 -458 2286 66 0 17 chr3 207060238 207060553 -10976605 + AluSx SINE Alu 1 310 0 2585 45 3 16 chr3 207061128 207061437 -10975721 + AluSp SINE Alu 1 305 -8 240 200 0 0 chr3 207062305 207062355 -10974803 + (TATG)n Simple_repeat Simple_repeat 2 51 0 180 176 0 0 chr3 207062360 207062394 -10974764 + (CATATA)n Simple_repeat Simple_repeat 4 37 0 196 333 68 38 chr3 207063086 207063218 -10973940 - MIR SINE MIR -106 156 21 223 234 94 16 chr3 207064788 207064852 -10972306 + MIR SINE MIR 37 105 -103 313 247 0 56 chr3 207065447 207065536 -10971622 - L2 LINE L2 -3 3310 3227 276 329 210 31 chr3 207065550 207065903 -10971255 - L2 LINE L2 -353 2961 2546 2246 116 0 3 chr3 207066017 207066327 -10970831 - AluSq SINE Alu -2 311 3 21 0 0 0 chr3 207066479 207066500 -10970658 + AT_rich Low_complexity Low_complexity 1 21 0 298 311 169 50 chr3 207066529 207066748 -10970410 + MIR SINE MIR 18 262 0 2282 104 3 0 chr3 207066975 207067272 -10969886 + AluSp SINE Alu 2 299 -14 25 51 0 0 chr3 207067483 207067522 -10969636 + AT_rich Low_complexity Low_complexity 1 39 0 458 252 45 112 chr3 207067537 207068001 -10969157 + L1ME4a LINE L1 5689 6121 0 327 25 0 0 chr3 207068237 207068277 -10968881 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 322 301 57 0 chr3 207068466 207068589 -10968569 + MLT1J2 LTR MaLR 39 168 -282 54 56 0 0 chr3 207068960 207069049 -10968109 + AT_rich Low_complexity Low_complexity 1 89 0 6461 133 17 7 chr3 207069514 207070696 -10966462 + L1MA6 LINE L1 5112 6298 -2 1925 85 0 0 chr3 207070972 207071208 -10965950 - AluSc SINE Alu -25 284 49 199 413 37 52 chr3 207072279 207072550 -10964608 + L2 LINE L2 2918 3184 -88 1811 145 80 0 chr3 207072696 207073007 -10964151 - MER1B DNA MER1_type 0 337 2 830 312 114 33 chr3 207074261 207074876 -10962282 - L2 LINE L2 0 3313 2650 22 0 0 0 chr3 207076186 207076208 -10960950 + AT_rich Low_complexity Low_complexity 1 22 0 2264 117 3 0 chr3 207076327 207076634 -10960524 - AluSg SINE Alu -1 309 2 2549 40 0 0 chr3 207078317 207078618 -10958540 - AluYa5 SINE Alu -10 301 1 229 265 48 48 chr3 207080174 207080257 -10956901 - MIR3 SINE MIR -13 195 113 189 0 0 0 chr3 207081906 207081927 -10955231 + (TA)n Simple_repeat Simple_repeat 2 22 0 242 254 0 0 chr3 207084149 207084204 -10952954 - MIR SINE MIR -108 154 100 1621 179 26 93 chr3 207084268 207084686 -10952472 + MLT1B LTR MaLR 1 390 0 1876 91 8 19 chr3 207084966 207085229 -10951929 + AluSc SINE Alu 37 296 -13 306 0 0 0 chr3 207086148 207086182 -10950976 + (TG)n Simple_repeat Simple_repeat 2 35 0 500 322 24 10 chr3 207086246 207086451 -10950707 + L2 LINE L2 2649 2856 -458 256 352 85 40 chr3 207086502 207086749 -10950409 + L2 LINE L2 2920 3177 -95 190 298 35 0 chr3 207086901 207086958 -10950200 + L2 LINE L2 3234 3292 -21 216 267 17 0 chr3 207088030 207088090 -10949068 - L2 LINE L2 -212 3060 3000 491 326 20 20 chr3 207088801 207088948 -10948210 + MIR3 SINE MIR 19 165 -43 938 194 22 11 chr3 207088971 207089203 -10947955 - AluJo SINE Alu -26 286 1 201 195 0 0 chr3 207089852 207089893 -10947265 + (TG)n Simple_repeat Simple_repeat 2 42 0 187 274 20 0 chr3 207090110 207090161 -10946997 + MIR SINE MIR 103 154 -108 2341 93 3 3 chr3 207090172 207090484 -10946674 - AluSq SINE Alu -1 312 1 410 370 75 23 chr3 207090635 207090900 -10946258 - L3 LINE CR1 -12 1565 1287 381 273 73 55 chr3 207092216 207092366 -10944792 - MIR SINE MIR 0 262 107 1825 178 0 3 chr3 207092366 207092664 -10944494 + AluJo SINE Alu 1 297 -15 381 273 73 55 chr3 207092664 207092678 -10944480 - MIR SINE MIR -155 107 95 279 0 0 0 chr3 207093726 207093757 -10943401 + (TA)n Simple_repeat Simple_repeat 2 32 0 358 317 0 20 chr3 207094855 207094956 -10942202 - MIR3 SINE MIR -24 184 86 201 121 0 0 chr3 207095618 207095651 -10941507 + (TCCA)n Simple_repeat Simple_repeat 3 35 0 439 250 58 8 chr3 207095660 207095780 -10941378 - L2 LINE L2 0 3272 3147 263 254 0 0 chr3 207095906 207095961 -10941197 - L2 LINE L2 -4 3309 3255 253 228 18 0 chr3 207096574 207096631 -10940527 - Charlie8 DNA MER1_type -4 2413 2356 563 221 51 123 chr3 207096651 207096773 -10940385 - MER5A DNA MER1_type 0 189 85 2424 68 0 0 chr3 207096773 207097066 -10940092 - AluY SINE Alu -18 293 1 563 221 51 123 chr3 207097066 207097138 -10940020 - MER5A DNA MER1_type -104 85 9 1950 137 26 40 chr3 207097253 207097633 -10939525 - THE1C LTR MaLR 0 375 1 1949 128 40 20 chr3 207098197 207098501 -10938657 + AluSg SINE Alu 1 310 0 635 320 32 20 chr3 207099317 207099570 -10937588 + MIR SINE MIR 7 262 0 3676 103 11 0 chr3 207100192 207100717 -10936441 + MER41A LTR ERV1 1 531 -23 781 287 22 9 chr3 207100940 207101163 -10935995 - MIR SINE MIR -30 232 7 264 59 0 0 chr3 207101664 207101698 -10935460 + MADE1 DNA Mariner 45 78 -2 563 150 70 0 chr3 207101908 207102008 -10935150 + AluSg/x SINE Alu 194 300 -9 2414 96 0 3 chr3 207103738 207104051 -10933107 + AluSq SINE Alu 1 312 -1 1340 189 68 4 chr3 207104310 207104605 -10932553 + AluJo SINE Alu 1 312 0 337 310 102 39 chr3 207104619 207104980 -10932178 + L1M4 LINE L1 4619 5002 -1144 226 198 12 47 chr3 207105106 207105192 -10931966 + A-rich Low_complexity Low_complexity 5 87 0 1927 149 3 0 chr3 207105376 207105671 -10931487 + AluSx SINE Alu 2 297 -15 435 238 49 0 chr3 207105845 207105967 -10931191 + L1MD3 LINE L1 7630 7757 -238 222 292 104 21 chr3 207105983 207106079 -10931079 - L2 LINE L2 -5 3308 3205 181 167 17 50 chr3 207106492 207106552 -10930606 + GA-rich Low_complexity Low_complexity 3 60 0 3257 118 28 41 chr3 207106788 207107322 -10929836 - MER1A DNA MER1_type 0 527 1 750 241 42 26 chr3 207108532 207108797 -10928361 + L1ME1 LINE L1 5875 6143 -23 28 48 0 0 chr3 207108797 207108839 -10928319 + AT_rich Low_complexity Low_complexity 1 42 0 2045 156 0 0 chr3 207108858 207109165 -10927993 - AluSx SINE Alu -2 310 4 209 333 27 13 chr3 207109266 207109341 -10927817 + MIR SINE MIR 40 115 -147 200 379 103 14 chr3 207110511 207110656 -10926502 - MIR SINE MIR -73 189 32 23 0 0 0 chr3 207110959 207110982 -10926176 + AT_rich Low_complexity Low_complexity 1 23 0 497 141 0 0 chr3 207112190 207112275 -10924883 + AluY SINE Alu 218 302 -9 216 0 0 0 chr3 207112505 207112529 -10924629 + (A)n Simple_repeat Simple_repeat 1 24 0 190 290 29 0 chr3 207112675 207112744 -10924414 - L3 LINE CR1 -5 1572 1502 2403 89 3 0 chr3 207112926 207113229 -10923929 + AluSp SINE Alu 1 304 -9 246 307 95 29 chr3 207113418 207113555 -10923603 - MIR SINE MIR -66 196 51 1628 184 0 50 chr3 207114920 207115056 -10922102 + AluJb SINE Alu 1 142 -170 396 0 0 0 chr3 207115056 207115100 -10922058 + (CA)n Simple_repeat Simple_repeat 2 45 0 248 0 0 30 chr3 207115110 207115143 -10922015 + (TA)n Simple_repeat Simple_repeat 1 32 0 1628 184 0 50 chr3 207115143 207115316 -10921842 + AluJb SINE Alu 151 305 -7 22 0 0 0 chr3 207115765 207115787 -10921371 + AT_rich Low_complexity Low_complexity 1 22 0 276 30 0 0 chr3 207116447 207116480 -10920678 + (TG)n Simple_repeat Simple_repeat 2 34 0 618 174 61 15 chr3 207117577 207117709 -10919449 - L1MA9 LINE L1 -9 6303 6166 377 251 144 71 chr3 207118987 207119301 -10917857 - L2 LINE L2 -227 3086 2752 999 196 45 136 chr3 207119587 207119858 -10917300 + MLT2C1 LTR ERVL 17 238 -159 2420 60 3 10 chr3 207119858 207120159 -10916999 + AluY SINE Alu 1 299 -12 999 196 45 136 chr3 207120159 207120306 -10916852 + MLT2C1 LTR ERVL 238 397 0 186 118 0 0 chr3 207120798 207120832 -10916326 + (TTTAA)n Simple_repeat Simple_repeat 2 35 0 4006 159 24 61 chr3 207120857 207121976 -10915182 + L1MA5 LINE L1 5092 6172 -128 2058 98 0 4 chr3 207122232 207122498 -10914660 + AluSq SINE Alu 1 265 -48 694 216 20 0 chr3 207123889 207124042 -10913116 + MER103 DNA DNA 11 166 0 720 351 184 27 chr3 207124111 207125046 -10912112 - L3 LINE CR1 -97 1480 399 2595 78 3 3 chr3 207126104 207126448 -10910710 - L1PA8 LINE L1 -13 6159 5816 267 300 33 0 chr3 207126569 207126659 -10910499 - MIR SINE MIR -91 171 79 327 237 0 0 chr3 207126666 207126759 -10910399 + (TA)n Simple_repeat Simple_repeat 2 94 0 523 250 21 0 chr3 207126763 207126805 -10910353 - L1MA10 LINE L1 -13 6321 6280 1245 278 25 23 chr3 207126805 207127241 -10909917 - L1ME2 LINE L1 -49 6115 5679 1272 236 130 41 chr3 207127252 207127469 -10909689 - L1ME2 LINE L1 -743 5403 5207 2215 94 0 26 chr3 207127469 207127777 -10909381 - AluSq SINE Alu -13 300 1 1272 236 130 41 chr3 207127777 207128145 -10909013 - L1ME2 LINE L1 -939 5207 4766 220 315 58 104 chr3 207128458 207128718 -10908440 - L3 LINE CR1 -6 1571 1324 1298 176 58 85 chr3 207129927 207130325 -10906833 + MLT1B LTR MaLR 4 390 0 352 299 31 10 chr3 207130377 207130474 -10906684 + L2 LINE L2 3165 3263 -9 428 210 266 14 chr3 207131225 207131368 -10905790 + MER5A DNA MER1_type 9 187 -2 293 293 90 15 chr3 207133164 207133297 -10903861 + L2 LINE L2 3044 3186 -86 586 213 15 7 chr3 207134939 207135075 -10902083 - L1PB4 LINE L1 0 6156 6020 368 303 154 19 chr3 207135806 207136014 -10901144 + MIR SINE MIR 21 256 -6 592 238 0 0 chr3 207136658 207136780 -10900378 + MIR SINE MIR 39 160 -102 1679 168 6 65 chr3 207138008 207138330 -10898828 - AluJb SINE Alu -9 303 1 205 370 34 8 chr3 207138583 207138702 -10898456 - L2 LINE L2 0 3272 3151 1132 251 127 18 chr3 207139166 207139553 -10897605 + MLT1J1 LTR MaLR 16 444 -2 202 267 83 0 chr3 207139755 207139815 -10897343 + L2 LINE L2 2607 2671 -643 1217 226 0 0 chr3 207139838 207140104 -10897054 - L1 LINE L1 -3113 3033 2768 384 172 0 0 chr3 207140103 207140167 -10896991 + L1PB1 LINE L1 5728 5791 -360 * 242 200 21 32 chr3 207140167 207140262 -10896896 + (CATATA)n Simple_repeat Simple_repeat 3 96 0 2510 104 0 23 chr3 207140279 207140664 -10896494 + L1PB1 LINE L1 5776 6151 0 345 293 179 18 chr3 207140806 207141029 -10896129 + L2 LINE L2 2871 3149 -164 949 120 0 0 chr3 207141029 207141162 -10895996 - FLAM_C SINE Alu 0 133 1 345 293 179 18 chr3 207141162 207141218 -10895940 + L2 LINE L2 3149 3195 -118 693 309 104 64 chr3 207143629 207144228 -10892930 - L2 LINE L2 -1182 2132 1499 219 69 0 0 chr3 207144228 207144257 -10892901 + (TTA)n Simple_repeat Simple_repeat 2 30 0 693 309 104 64 chr3 207144257 207144360 -10892798 - L2 LINE L2 -1815 1499 1402 232 350 16 32 chr3 207144354 207144477 -10892681 - MIR3 SINE MIR -3 205 85 * 926 101 65 0 chr3 207145995 207146134 -10891024 - AluSp/q SINE Alu -10 303 156 1493 116 0 5 chr3 207146142 207146341 -10890817 - AluSx SINE Alu -112 200 3 455 294 74 23 chr3 207146420 207146719 -10890439 + L1ME4a LINE L1 5512 5825 -296 23 0 0 0 chr3 207146726 207146749 -10890409 + AT_rich Low_complexity Low_complexity 1 23 0 233 231 17 60 chr3 207146838 207146955 -10890203 + L1ME4a LINE L1 5991 6102 -19 207 186 136 17 chr3 207147286 207147345 -10889813 - L3 LINE CR1 -2 1575 1510 280 287 62 87 chr3 207148047 207148242 -10888916 + MIR3 SINE MIR 19 208 0 2119 137 0 3 chr3 207148244 207148550 -10888608 + AluSx SINE Alu 1 305 -7 249 270 54 40 chr3 207149091 207149165 -10887993 - L2 LINE L2 -57 3215 3141 2261 106 10 6 chr3 207149220 207149531 -10887627 + AluSq SINE Alu 1 312 -1 270 81 0 0 chr3 207150189 207150226 -10886932 + (CA)n Simple_repeat Simple_repeat 2 38 0 228 352 57 0 chr3 207150679 207150784 -10886374 - MIR SINE MIR -62 146 36 254 250 24 48 chr3 207151603 207151687 -10885471 + MIR SINE MIR 110 191 -71 446 288 0 64 chr3 207152202 207152327 -10884831 + L2 LINE L2 3150 3266 -6 641 186 103 73 chr3 207152953 207153075 -10884083 + MIR SINE MIR 1 134 -128 2067 127 7 0 chr3 207153075 207153404 -10883754 + AluSx SINE Alu 1 331 0 641 186 103 73 chr3 207153404 207153484 -10883674 + MIR SINE MIR 134 210 -52 548 278 60 36 chr3 207153771 207154023 -10883135 + MIR SINE MIR 4 261 -1 184 374 51 36 chr3 207154157 207154352 -10882806 - L2 LINE L2 -342 2972 2775 2317 99 0 13 chr3 207154405 207154719 -10882439 - AluSp SINE Alu -3 310 1 1897 154 0 7 chr3 207155989 207156306 -10880852 + AluSx SINE Alu 1 315 0 396 297 93 55 chr3 207156333 207156439 -10880719 + MIR SINE MIR 47 164 -98 1283 180 8 8 chr3 207156439 207156700 -10880458 - L1MA4 LINE L1 -1 6299 6039 396 297 93 55 chr3 207156700 207156775 -10880383 + MIR SINE MIR 164 235 -27 22 35 0 0 chr3 207156928 207156957 -10880201 + AT_rich Low_complexity Low_complexity 1 29 0 190 333 0 0 chr3 207158101 207158161 -10878997 - MIR SINE MIR -158 104 45 22 88 0 0 chr3 207158629 207158686 -10878472 + AT_rich Low_complexity Low_complexity 1 57 0 212 184 0 0 chr3 207158955 207158993 -10878165 + A-rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr3 207159748 207159772 -10877386 + AT_rich Low_complexity Low_complexity 1 24 0 2450 58 0 26 chr3 207161272 207161581 -10875577 + AluY SINE Alu 1 301 -10 1643 70 0 0 chr3 207163184 207163399 -10873759 + L1PA5 LINE L1 5940 6154 0 2472 64 0 0 chr3 207164439 207164734 -10872424 + AluY SINE Alu 1 295 -16 203 383 98 13 chr3 207164784 207165019 -10872139 + L2 LINE L2 2908 3162 -110 2213 112 7 0 chr3 207165968 207166263 -10870895 + AluSx SINE Alu 1 297 -15 22 0 0 0 chr3 207166731 207166753 -10870405 + AT_rich Low_complexity Low_complexity 1 22 0 245 366 30 0 chr3 207168838 207168939 -10868219 - MIR SINE MIR -78 130 27 374 220 17 144 chr3 207169096 207169269 -10867889 - MIR SINE MIR -34 228 78 414 0 0 0 chr3 207169321 207169367 -10867791 + (TA)n Simple_repeat Simple_repeat 2 47 0 2594 40 0 7 chr3 207169615 207169919 -10867239 - AluY SINE Alu -9 302 1 1537 166 217 11 chr3 207170240 207170595 -10866563 + MSTA LTR MaLR 1 428 0 216 229 108 24 chr3 207171010 207171093 -10866065 + MIR SINE MIR 23 112 -96 202 255 11 11 chr3 207172247 207172313 -10864845 - MIR SINE MIR -108 154 90 459 264 98 12 chr3 207172519 207172682 -10864476 - MIR SINE MIR 0 262 86 2092 120 0 3 chr3 207173969 207174253 -10862905 + AluSq SINE Alu 1 283 -30 26 0 0 0 chr3 207174253 207174279 -10862879 + GC_rich Low_complexity Low_complexity 1 26 0 376 336 45 8 chr3 207174519 207174653 -10862505 - MIR3 SINE MIR -18 190 52 13793 142 28 15 chr3 207174816 207177200 -10859958 + Tigger1 DNA MER2_type 1 2415 -3 2007 92 10 14 chr3 207177818 207178110 -10859048 - AluY SINE Alu -20 291 1 392 255 105 26 chr3 207178219 207178372 -10858786 + L1MDa LINE L1 293 457 -6083 40 0 0 0 chr3 207178469 207178509 -10858649 + AT_rich Low_complexity Low_complexity 1 40 0 374 332 88 47 chr3 207179222 207179541 -10857617 - L3 LINE CR1 -148 1429 1098 215 255 9 113 chr3 207179849 207179955 -10857203 - MIR3 SINE MIR -112 96 2 201 127 238 0 chr3 207180540 207180603 -10856555 - MER5C DNA MER1_type -11 313 236 200 226 48 60 chr3 207180573 207180657 -10856501 - MIR SINE MIR -74 188 106 * 631 336 24 12 chr3 207180737 207180984 -10856174 + MIR SINE MIR 13 262 0 386 250 27 36 chr3 207181497 207181609 -10855549 - MIR SINE MIR -56 206 96 751 180 8 8 chr3 207181997 207182125 -10855033 - FLAM_C SINE Alu -5 128 1 913 155 0 27 chr3 207182171 207182319 -10854839 - FRAM SINE Alu -13 163 20 594 210 13 51 chr3 207182319 207182476 -10854682 - MER20 DNA MER1_type -68 151 1 280 371 61 8 chr3 207182659 207182791 -10854367 + L2 LINE L2 3126 3264 -8 207 279 0 47 chr3 207183258 207183344 -10853814 + CT-rich Low_complexity Low_complexity 1 82 0 22 0 0 0 chr3 207183764 207183786 -10853372 + AT_rich Low_complexity Low_complexity 1 22 0 2216 124 0 0 chr3 207183864 207184163 -10852995 - AluSx SINE Alu -13 299 1 1026 194 14 36 chr3 207184195 207184417 -10852741 + MER20 DNA MER1_type 1 217 -2 364 280 51 48 chr3 207185331 207185477 -10851681 + MIR3 SINE MIR 11 157 -51 312 267 38 69 chr3 207186166 207186311 -10850847 + MIR SINE MIR 12 152 -56 210 247 43 11 chr3 207186874 207186967 -10850191 + GA-rich Low_complexity Low_complexity 4 99 0 323 289 96 37 chr3 207187188 207187375 -10849783 + MIR3 SINE MIR 5 202 -6 2513 33 0 10 chr3 207187811 207188112 -10849046 + AluY SINE Alu 1 298 -13 439 307 53 32 chr3 207190049 207190238 -10846920 - MIR SINE MIR -21 241 49 191 250 52 135 chr3 207190910 207191006 -10846152 + MIR3 SINE MIR 69 156 -52 2081 84 7 40 chr3 207192581 207192877 -10844281 + AluSq SINE Alu 15 300 -13 444 139 0 0 chr3 207192877 207192956 -10844202 + (GGGGA)n Simple_repeat Simple_repeat 3 81 0 306 50 0 0 chr3 207192963 207193003 -10844155 + (CAGAG)n Simple_repeat Simple_repeat 4 43 0 244 186 0 78 chr3 207193577 207193679 -10843479 + GA-rich Low_complexity Low_complexity 4 97 0 230 303 99 56 chr3 207193712 207193874 -10843284 - MIR3 SINE MIR -11 197 29 331 278 101 92 chr3 207194152 207194458 -10842700 - L1M2 LINE L1 -6004 845 537 * 391 274 126 112 chr3 207194243 207194750 -10842408 + L1M2 LINE L1 595 1108 -5741 388 139 0 38 chr3 207195027 207195125 -10842033 + L1PA8 LINE L1 6097 6172 0 206 330 82 0 chr3 207195148 207195245 -10841913 - MIR SINE MIR -127 135 31 300 200 160 20 chr3 207195398 207195498 -10841660 + MIR SINE MIR 21 134 -128 2223 100 37 0 chr3 207195556 207195856 -10841302 + AluSx SINE Alu 1 311 -1 252 122 0 0 chr3 207195856 207195897 -10841261 + (GGAGA)n Simple_repeat Simple_repeat 2 42 0 206 299 28 65 chr3 207196814 207196921 -10840237 - L2 LINE L2 -74 3198 3096 2298 113 0 0 chr3 207196953 207197263 -10839895 + AluSx SINE Alu 1 310 -2 753 219 113 0 chr3 207197551 207197702 -10839456 - MER5B DNA MER1_type -8 170 3 252 271 0 29 chr3 207197964 207198034 -10839124 + LTR40c LTR ERVL 1 68 -397 359 267 56 0 chr3 207198054 207198144 -10839014 - MER5A DNA MER1_type -63 126 32 254 344 21 10 chr3 207198222 207198318 -10838840 - MER5B DNA MER1_type -79 99 3 874 220 5 58 chr3 207198332 207198555 -10838603 + MER20 DNA MER1_type 1 211 -8 21 36 0 0 chr3 207199507 207199535 -10837623 + AT_rich Low_complexity Low_complexity 1 28 0 2149 106 0 0 chr3 207199776 207200090 -10837068 + AluSq SINE Alu 1 314 0 338 350 23 29 chr3 207200153 207200382 -10836776 - MIR SINE MIR -15 247 21 306 50 0 0 chr3 207200541 207200581 -10836577 + (TG)n Simple_repeat Simple_repeat 2 41 0 2134 82 79 10 chr3 207203057 207203349 -10833809 + AluSp SINE Alu 1 312 -1 2368 96 3 0 chr3 207203522 207203823 -10833335 + AluSg SINE Alu 1 302 -8 354 331 65 12 chr3 207204268 207204437 -10832721 + MIR3 SINE MIR 30 207 -1 27 29 0 0 chr3 207205372 207205406 -10831752 + AT_rich Low_complexity Low_complexity 1 34 0 303 366 37 8 chr3 207206928 207207062 -10830096 - MIR3 SINE MIR -11 197 60 4369 40 14 7 chr3 207207480 207208034 -10829124 + LTR6B LTR ERV1 1 558 0 504 300 53 65 chr3 207208359 207208699 -10828459 + L2 LINE L2 2370 2705 -609 3526 242 8 8 chr3 207208704 207209718 -10827440 + L1ME LINE L1 4264 5277 -869 2160 130 3 0 chr3 207209739 207210040 -10827118 + AluSx SINE Alu 1 302 -10 253 320 0 7 chr3 207210049 207210202 -10826956 + L1ME LINE L1 5273 5424 -2571 300 104 21 0 chr3 207211261 207211309 -10825849 + AluSx SINE Alu 1 49 -254 1455 193 4 0 chr3 207211409 207211673 -10825485 + AluSx SINE Alu 39 303 -9 4549 189 56 4 chr3 207211681 207212680 -10824478 + L1MC1 LINE L1 5272 6322 -11 634 261 70 26 chr3 207212697 207213038 -10824120 - MER114 LTR ERV -292 356 1 536 173 0 0 chr3 207213107 207213217 -10823941 + L1MB8 LINE L1 6066 6175 -3 33 25 0 0 chr3 207213353 207213393 -10823765 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr3 207213426 207213448 -10823710 + AT_rich Low_complexity Low_complexity 1 22 0 276 364 161 13 chr3 207213517 207213680 -10823478 + L2 LINE L2 2705 2843 -470 2249 101 0 3 chr3 207213680 207213976 -10823182 - AluY SINE Alu -16 295 1 276 364 161 13 chr3 207213976 207214187 -10822971 + L2 LINE L2 2843 3022 -291 387 0 0 0 chr3 207214187 207214230 -10822928 + (TG)n Simple_repeat Simple_repeat 2 44 0 276 364 161 13 chr3 207214230 207214329 -10822829 + L2 LINE L2 3022 3275 -38 255 217 24 12 chr3 207214350 207214433 -10822725 + (TAAA)n Simple_repeat Simple_repeat 3 86 0 209 313 94 23 chr3 207214460 207214588 -10822570 - L3b LINE CR1 -198 1385 1249 433 324 108 60 chr3 207214621 207214991 -10822167 - L2 LINE L2 -4 3268 2881 678 278 29 0 chr3 207215313 207215522 -10821636 + LTR16C LTR ERVL 247 461 -30 28 29 0 0 chr3 207216168 207216203 -10820955 + AT_rich Low_complexity Low_complexity 1 35 0 322 282 195 0 chr3 207216476 207216625 -10820533 + MER46C DNA MER2_type 3 180 -158 345 231 133 64 chr3 207216674 207216877 -10820281 + L1ME LINE L1 5602 5818 -346 4456 120 36 12 chr3 207217285 207217927 -10819231 - L1PA16 LINE L1 -9 6157 5495 2496 73 0 13 chr3 207217927 207218241 -10818917 - AluY SINE Alu -1 310 1 4456 120 36 12 chr3 207218241 207218317 -10818841 - L1PA16 LINE L1 -671 5495 5422 2309 102 0 0 chr3 207218691 207218985 -10818173 + AluSg SINE Alu 1 294 -16 219 226 16 16 chr3 207219023 207219106 -10818052 + (TA)n Simple_repeat Simple_repeat 1 83 0 1736 118 30 11 chr3 207219385 207219727 -10817431 - LTR7 LTR ERV1 -2 448 48 214 174 0 0 chr3 207220065 207220111 -10817047 + G-rich Low_complexity Low_complexity 1 46 0 749 42 0 0 chr3 207220480 207220575 -10816583 + L1PA11 LINE L1 6047 6141 -33 350 56 130 0 chr3 207220577 207220631 -10816527 + L1PA10 LINE L1 6096 6156 -12 2235 90 23 0 chr3 207220980 207221280 -10815878 + AluSg SINE Alu 1 307 -3 3288 288 34 34 chr3 207221601 207222874 -10814284 - ERVL LTR ERVL -695 5069 3797 891 201 35 61 chr3 207223091 207223263 -10813895 + MLT2B3 LTR ERVL 332 498 -56 566 108 0 11 chr3 207223263 207223356 -10813802 + (TCTA)n Simple_repeat Simple_repeat 2 93 0 891 201 35 61 chr3 207223356 207223412 -10813746 + MLT2B3 LTR ERVL 498 554 0 280 254 17 11 chr3 207223517 207223666 -10813492 + L1P4 LINE L1 5733 5884 -294 278 250 392 0 chr3 207223908 207224112 -10813046 - L3 LINE CR1 -242 1335 1052 1269 85 21 0 chr3 207224939 207225128 -10812030 - L1P LINE L1 -3457 2689 2497 242 209 0 0 chr3 207225134 207225177 -10811981 + tRNA-Glu-GAG tRNA tRNA 1 43 -32 1519 249 71 39 chr3 207225264 207225794 -10811364 + MLT1E2 LTR MaLR 51 597 -29 535 229 63 23 chr3 207225794 207225969 -10811189 - MER93b LTR ERV1 0 373 192 704 259 57 12 chr3 207226104 207226401 -10810757 - MER21B LTR ERV1 -484 379 1 1263 251 60 42 chr3 207226413 207227099 -10810059 + L1ME1 LINE L1 4590 5287 -859 983 253 84 8 chr3 207227102 207227466 -10809692 + L1ME1 LINE L1 5527 5913 -253 353 307 39 11 chr3 207227580 207227759 -10809399 - L1PA12 LINE L1 -5216 2365 2182 1695 124 58 107 chr3 207229147 207229541 -10807617 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr3 207229629 207229650 -10807508 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chr3 207231316 207231347 -10805811 + AT_rich Low_complexity Low_complexity 1 31 0 693 183 23 0 chr3 207231674 207231805 -10805353 + FRAM SINE Alu 30 163 -13 243 61 0 0 chr3 207232063 207232096 -10805062 + (CA)n Simple_repeat Simple_repeat 2 34 0 510 99 216 18 chr3 207232774 207232885 -10804273 - LTR7 LTR ERV1 -317 133 1 237 65 0 0 chr3 207232885 207232916 -10804242 + (T)n Simple_repeat Simple_repeat 1 31 0 2770 86 98 0 chr3 207233107 207233515 -10803643 + LTR7 LTR ERV1 1 448 -2 18675 93 41 9 chr3 207233517 207236412 -10800746 + HERVH LTR ERV1 1 2987 -4726 793 162 20 0 chr3 207236406 207236554 -10800604 + HERVH LTR ERV1 3140 3290 -4423 * 3129 113 4 4 chr3 207236553 207237047 -10800111 + HERVH LTR ERV1 3500 3993 -3720 4066 142 1 1 chr3 207237049 207237711 -10799447 + HERVH LTR ERV1 4488 5149 -2564 1229 124 28 18 chr3 207237712 207237930 -10799228 + HERVH LTR ERV1 5600 5819 -1894 2193 83 62 13 chr3 207237930 207238302 -10798856 + HERVH LTR ERV1 7324 7713 0 2829 76 95 0 chr3 207238302 207238711 -10798447 + LTR7 LTR ERV1 1 448 -2 325 270 45 9 chr3 207239997 207240108 -10797050 + MIR SINE MIR 144 258 -4 900 107 0 0 chr3 207240442 207240563 -10796595 + AluSg/x SINE Alu 179 299 -13 33 66 0 0 chr3 207240997 207241058 -10796100 + AT_rich Low_complexity Low_complexity 1 61 0 2371 110 3 0 chr3 207241343 207241652 -10795506 - AluSp SINE Alu -3 310 1 256 279 49 94 chr3 207241846 207242037 -10795121 + MIR SINE MIR 35 216 -46 435 296 89 19 chr3 207243219 207243489 -10793669 - MER110 LTR ERV1 -27 464 176 329 186 139 0 chr3 207243579 207243665 -10793493 - MER110A LTR ERV1 -292 176 79 2396 77 17 0 chr3 207243823 207244122 -10793036 - AluSg SINE Alu -6 304 1 2061 123 7 7 chr3 207245042 207245343 -10791815 + AluSx SINE Alu 5 305 -7 388 256 2 0 chr3 207245600 207245720 -10791438 + L1ME LINE L1 5618 5738 -383 622 223 83 38 chr3 207245906 207246063 -10791095 + FAM SINE Alu 1 164 -11 22 0 0 0 chr3 207246207 207246229 -10790929 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 207247656 207247678 -10789480 + AT_rich Low_complexity Low_complexity 1 22 0 1073 335 131 29 chr3 207248757 207249270 -10787888 + L2 LINE L2 1038 1497 -1817 2135 140 3 0 chr3 207249270 207249578 -10787580 + AluSx SINE Alu 3 311 -1 1073 335 131 29 chr3 207249578 207249947 -10787211 + L2 LINE L2 1497 2010 -1304 8808 47 6 3 chr3 207250077 207251145 -10786013 + MER11C LTR ERVK 1 1071 0 2101 125 14 0 chr3 207251221 207251517 -10785641 + AluSx SINE Alu 1 300 -12 441 0 0 0 chr3 207251555 207251604 -10785554 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 1995 139 0 0 chr3 207251604 207251884 -10785274 - AluSx SINE Alu -32 280 1 344 143 39 26 chr3 207251884 207251961 -10785197 - L1 LINE L1 -1132 6433 6356 * 3483 194 48 18 chr3 207251939 207252377 -10784781 - L1 LINE L1 -3058 4507 4084 2868 100 20 33 chr3 207252377 207252452 -10784706 - MLT2A1 LTR ERVL -1 443 369 1900 148 23 3 chr3 207252452 207252756 -10784402 - AluSx SINE Alu -2 310 1 2868 100 20 33 chr3 207252756 207253129 -10784029 - MLT2A1 LTR ERVL -75 369 1 3483 194 48 18 chr3 207253129 207253765 -10783393 - L1 LINE L1 -3481 4084 3392 189 0 0 0 chr3 207253765 207253786 -10783372 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3483 194 48 18 chr3 207253786 207253925 -10783233 - L1 LINE L1 -4173 3392 3259 448 252 0 0 chr3 207253925 207254032 -10783126 - U6 snRNA snRNA 0 107 1 3032 231 54 32 chr3 207254042 207255045 -10782113 + L1 LINE L1 2150 3174 -2972 189 304 25 38 chr3 207256770 207256849 -10780309 + MER5A DNA MER1_type 112 189 0 482 195 24 24 chr3 207257061 207257184 -10779974 + FLAM_C SINE Alu 5 127 -6 778 193 30 0 chr3 207258457 207258654 -10778504 + L1 LINE L1 3167 3369 -2777 26 30 0 0 chr3 207258843 207258876 -10778282 + AT_rich Low_complexity Low_complexity 1 33 0 616 290 0 30 chr3 207259000 207259200 -10777958 + MIR SINE MIR 69 262 0 237 297 20 40 chr3 207259219 207259320 -10777838 + MIR SINE MIR 53 151 -111 2331 69 0 20 chr3 207259369 207259674 -10777484 + AluY SINE Alu 3 301 -10 1690 61 8 46 chr3 207259737 207259998 -10777160 - L1MA1 LINE L1 -436 5866 5616 2925 83 30 11 chr3 207259998 207260423 -10776735 + L1MA1 LINE L1 5862 6302 0 224 233 14 0 chr3 207260562 207260635 -10776523 + CT-rich Low_complexity Low_complexity 4 77 0 236 253 44 137 chr3 207260812 207260994 -10776164 - MER5A DNA MER1_type -5 184 20 656 251 154 15 chr3 207262364 207262631 -10774527 - MER5C DNA MER1_type -17 307 4 181 398 0 0 chr3 207262647 207262740 -10774418 - MIR SINE MIR -61 147 55 24 53 0 0 chr3 207262975 207263013 -10774145 + AT_rich Low_complexity Low_complexity 1 38 0 413 176 25 17 chr3 207263128 207263247 -10773911 + CT-rich Low_complexity Low_complexity 3 122 0 1662 151 59 43 chr3 207263264 207263568 -10773590 - AluSx SINE Alu -1 311 3 4870 117 108 126 chr3 207264690 207266135 -10771023 - pTR5 LTR ERV1 -143 2295 733 293 243 189 18 chr3 207266184 207266295 -10770863 + MER69 DNA AcHobo 6 135 -2391 320 240 0 0 chr3 207266357 207266432 -10770726 + MER69 DNA AcHobo 256 330 -2196 823 201 105 59 chr3 207266455 207266779 -10770379 + L1MC4 LINE L1 6742 7080 -962 331 252 16 63 chr3 207266813 207266940 -10770218 + L1MC4 LINE L1 7922 8042 0 1848 256 63 36 chr3 207266954 207267657 -10769501 + MER69 DNA AcHobo 343 1064 -1462 815 208 65 4 chr3 207267678 207267923 -10769235 + MER69 DNA AcHobo 2084 2343 -183 1612 191 0 4 chr3 207267990 207268257 -10768901 + AluJb SINE Alu 25 290 -22 600 269 28 0 chr3 207268349 207268531 -10768627 - L1MC5 LINE L1 -722 7239 7053 * 2699 258 51 17 chr3 207268504 207269528 -10767630 + L1 LINE L1 2352 3410 -2736 21 0 0 0 chr3 207269597 207269618 -10767540 + AT_rich Low_complexity Low_complexity 1 21 0 2236 103 3 6 chr3 207269674 207269985 -10767173 + AluSx SINE Alu 1 310 -2 2436 52 3 10 chr3 207270468 207270775 -10766383 - AluY SINE Alu -6 305 1 594 0 0 0 chr3 207270826 207270892 -10766266 + (CAATA)n Simple_repeat Simple_repeat 1 66 0 591 185 75 7 chr3 207270893 207271039 -10766119 + L1 LINE L1 4415 4570 -1576 2478 52 0 10 chr3 207271180 207271486 -10765672 - AluY SINE Alu -8 303 1 307 250 167 17 chr3 207271509 207271629 -10765529 + MIR SINE MIR 124 261 -1 394 321 27 43 chr3 207272639 207272823 -10764335 + MIR3 SINE MIR 23 203 -5 * 452 250 0 0 chr3 207272807 207272911 -10764247 - L2 LINE L2 -3 3310 3207 1957 153 3 0 chr3 207273365 207273659 -10763499 - AluSx SINE Alu -17 295 1 241 336 66 8 chr3 207273721 207273843 -10763315 + L2 LINE L2 3136 3264 -8 327 342 0 0 chr3 207273962 207274038 -10763120 + MER5A DNA MER1_type 14 89 -100 1224 108 8 119 chr3 207274040 207274238 -10762920 - AluJo SINE Alu -4 308 142 2204 111 0 0 chr3 207274238 207274526 -10762632 - AluSp SINE Alu -25 288 1 1224 108 8 119 chr3 207274526 207274578 -10762580 - AluJo SINE Alu -170 142 86 193 184 53 0 chr3 207274602 207274640 -10762518 + MER5A DNA MER1_type 148 187 -2 264 333 31 124 chr3 207275072 207275588 -10761570 - L2 LINE L2 0 3272 2805 231 306 207 26 chr3 207275678 207275910 -10761248 - L2 LINE L2 -560 2754 2481 1965 113 14 11 chr3 207276106 207276390 -10760768 + AluSx SINE Alu 1 285 -27 357 75 0 0 chr3 207276407 207276460 -10760698 + (CA)n Simple_repeat Simple_repeat 1 53 0 1507 199 32 45 chr3 207276883 207277195 -10759963 - AluJo SINE Alu -4 308 1 256 306 12 12 chr3 207277474 207277559 -10759599 + MIR SINE MIR 51 135 -127 252 139 0 0 chr3 207278565 207278601 -10758557 + MER20 DNA MER1_type 178 213 -6 1988 208 54 22 chr3 207278827 207279127 -10758031 + Charlie1b DNA MER1_type 1 325 -2436 1967 143 10 3 chr3 207279127 207279420 -10757738 + AluSx SINE Alu 1 295 -17 1988 208 54 22 chr3 207279420 207279620 -10757538 + Charlie1b DNA MER1_type 325 517 -6 1128 228 126 69 chr3 207279713 207280135 -10757023 + MLT2B1 LTR ERVL 1 446 -74 319 216 114 0 chr3 207280151 207280239 -10756919 - MER5A DNA MER1_type -88 101 4 320 319 163 7 chr3 207280241 207280382 -10756776 + MER5A DNA MER1_type 27 189 0 418 309 57 51 chr3 207280392 207280567 -10756591 + MER5B DNA MER1_type 3 178 0 2273 104 0 3 chr3 207280798 207281106 -10756052 - AluSp SINE Alu -6 307 1 443 237 42 34 chr3 207281229 207281347 -10755811 - MIR3 SINE MIR -22 186 68 2410 178 102 4 chr3 207282453 207282953 -10754205 + MER44D DNA MER2_type 1 604 -1 402 293 52 37 chr3 207283159 207283350 -10753808 - MIR SINE MIR -49 213 20 321 320 87 27 chr3 207283376 207283595 -10753563 + MIR SINE MIR 21 252 -10 2121 111 0 41 chr3 207284367 207284546 -10752612 - AluSq SINE Alu -10 303 141 2643 50 0 0 chr3 207284546 207284849 -10752309 - AluY SINE Alu -8 303 1 2121 111 0 41 chr3 207284849 207284985 -10752173 - AluSq SINE Alu -172 141 1 449 198 66 9 chr3 207285391 207285497 -10751661 - Charlie4 DNA MER1_type -1807 154 43 278 286 143 22 chr3 207285755 207285937 -10751221 + MIR SINE MIR 45 248 -14 180 265 8 17 chr3 207286866 207286983 -10750175 + GA-rich Low_complexity Low_complexity 2 117 0 426 322 46 20 chr3 207286998 207287150 -10750008 + MIR3 SINE MIR 26 181 -27 182 273 114 34 chr3 207287387 207287475 -10749683 - MIR SINE MIR -114 148 54 21 57 0 0 chr3 207287956 207287991 -10749167 + AT_rich Low_complexity Low_complexity 1 35 0 583 309 47 31 chr3 207288164 207288420 -10748738 - MIR SINE MIR 0 262 3 1023 170 19 29 chr3 207288510 207288716 -10748442 + Tigger1 DNA MER2_type 14 217 -2201 804 245 29 25 chr3 207288773 207289018 -10748140 + MER112 DNA MER1_type 9 254 -6 1887 119 4 22 chr3 207289131 207289408 -10747750 + AluSq SINE Alu 1 272 -41 367 81 2 2 chr3 207289782 207289849 -10747309 - Alu SINE Alu -254 49 1 301 339 0 18 chr3 207289901 207290010 -10747148 - L1MC4 LINE L1 -1322 6720 6614 456 94 53 29 chr3 207290054 207290225 -10746933 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 214 22 109 0 chr3 207290228 207290274 -10746884 + (TA)n Simple_repeat Simple_repeat 2 52 0 1242 47 0 0 chr3 207290294 207290444 -10746714 + L1PA10 LINE L1 5993 6142 -26 353 56 130 0 chr3 207290444 207290498 -10746660 + L1PA11 LINE L1 6097 6157 -17 2521 43 20 0 chr3 207290845 207291148 -10746010 + AluY SINE Alu 1 309 -2 548 353 69 39 chr3 207291510 207292127 -10745031 + L1ME LINE L1 4399 4996 -1150 2113 129 39 39 chr3 207292127 207292491 -10744667 + THE1B LTR MaLR 1 364 0 11011 116 14 0 chr3 207292492 207294050 -10743108 + THE1B-int LTR MaLR 2 1580 0 1996 160 30 28 chr3 207294050 207294413 -10742745 + THE1B LTR MaLR 1 364 0 548 353 69 39 chr3 207294413 207294589 -10742569 + L1ME LINE L1 4995 5219 -927 629 255 137 30 chr3 207294594 207295026 -10742132 + L1ME LINE L1 5259 5736 -385 2133 268 44 53 chr3 207295037 207295735 -10741423 + L2 LINE L2 1997 2688 -626 2297 92 16 0 chr3 207295954 207296257 -10740901 - AluSc SINE Alu -1 308 1 296 308 0 13 chr3 207296344 207296422 -10740736 + L2 LINE L2 3190 3266 -6 542 152 232 6 chr3 207296570 207296734 -10740424 - Charlie2a DNA MER1_type -1184 1678 1478 756 286 23 19 chr3 207296882 207297141 -10740017 - Charlie2a DNA MER1_type -2557 305 46 22 35 0 0 chr3 207297454 207297483 -10739675 + AT_rich Low_complexity Low_complexity 1 29 0 308 357 78 13 chr3 207297723 207297877 -10739281 + L2 LINE L2 3109 3272 0 2355 89 0 3 chr3 207298278 207298582 -10738576 + AluSg SINE Alu 1 303 -7 24 0 0 0 chr3 207298630 207298654 -10738504 + AT_rich Low_complexity Low_complexity 1 24 0 200 288 0 0 chr3 207299499 207299565 -10737593 + A-rich Low_complexity Low_complexity 1 66 0 22 56 0 0 chr3 207299846 207299882 -10737276 + AT_rich Low_complexity Low_complexity 1 36 0 231 287 89 50 chr3 207300452 207300654 -10736504 + L1MEd LINE L1 1007 1216 -4903 6662 134 30 10 chr3 207300657 207302585 -10734573 + L1MA2 LINE L1 4336 6304 0 2072 127 0 0 chr3 207302629 207302920 -10734238 - AluSx SINE Alu -21 291 1 271 256 132 16 chr3 207303103 207303224 -10733934 + HAL1 LINE L1 1473 1607 -900 227 286 0 10 chr3 207303978 207304076 -10733082 - L1 LINE L1 -1318 4828 4732 438 20 0 0 chr3 207305025 207305076 -10732082 + (CA)n Simple_repeat Simple_repeat 1 51 0 321 113 0 38 chr3 207305998 207306051 -10731107 + MSTC LTR MaLR 1 51 -377 259 98 0 0 chr3 207306094 207306135 -10731023 + L1PA6 LINE L1 6109 6149 -5 308 226 0 16 chr3 207306152 207306214 -10730944 + MSTD LTR MaLR 70 130 -298 808 216 66 6 chr3 207306243 207306424 -10730734 + MSTD LTR MaLR 205 396 0 765 322 36 51 chr3 207306424 207306874 -10730284 - ERVL LTR ERVL -788 4976 4534 302 71 0 0 chr3 207306927 207306969 -10730189 - L1PA16 LINE L1 -19 6147 6106 1351 234 45 25 chr3 207307007 207307366 -10729792 - MLT1A2 LTR MaLR -8 366 1 390 315 0 0 chr3 207307379 207307506 -10729652 - ERVL LTR ERVL -1332 4432 4306 13710 184 22 16 chr3 207307507 207311584 -10725574 - L1PA12 LINE L1 -1605 5979 1567 324 70 0 0 chr3 207311584 207311627 -10725531 + (TG)n Simple_repeat Simple_repeat 2 44 0 13710 184 22 16 chr3 207311627 207313205 -10723953 - L1PA12 LINE L1 -6017 1567 1 359 345 99 6 chr3 207313217 207313388 -10723770 - MIR SINE MIR -59 203 17 244 97 0 0 chr3 207313452 207313483 -10723675 - L1PA12 LINE L1 -6144 1437 1407 207 0 0 0 chr3 207313681 207313704 -10723454 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 452 200 9 0 chr3 207314715 207314820 -10722338 + CT-rich Low_complexity Low_complexity 3 108 0 213 205 0 60 chr3 207314834 207314917 -10722241 + CT-rich Low_complexity Low_complexity 3 80 0 368 378 25 14 chr3 207316730 207316946 -10720212 - MIR SINE MIR -34 228 10 286 365 51 1 chr3 207317760 207317874 -10719284 - MIR SINE MIR -57 151 30 448 287 100 13 chr3 207319054 207319225 -10717933 - MIR SINE MIR -56 206 12 374 301 39 11 chr3 207319810 207319950 -10717208 + MIR SINE MIR 21 164 -62 405 226 183 51 chr3 207320495 207320632 -10716526 + MER5A DNA MER1_type 35 189 0 2055 139 0 19 chr3 207320763 207321072 -10716086 + AluSg SINE Alu 2 304 -6 285 29 0 0 chr3 207322693 207322728 -10714430 + AluS SINE Alu 53 87 -216 1352 152 5 27 chr3 207323393 207323617 -10713541 + AluSx SINE Alu 38 256 -56 1137 245 55 44 chr3 207323866 207324319 -10712839 - L1MC4 LINE L1 -414 7628 7171 550 208 25 199 chr3 207324531 207325013 -10712145 - L1MC4a LINE L1 -901 7141 6659 1284 146 32 8 chr3 207325626 207326067 -10711091 + LTR54 LTR ERV1 1 510 0 370 274 0 0 chr3 207326076 207326171 -10710987 - Charlie7 DNA MER1_type -1901 711 617 2597 161 30 67 chr3 207326237 207326845 -10710313 - MER34C LTR ERV1 0 585 1 2737 3 0 0 chr3 207326930 207327226 -10709932 - AluYa5 SINE Alu -15 296 1 522 212 61 0 chr3 207327246 207327411 -10709747 - MER104 DNA Tc2 -5 175 1 246 325 167 0 chr3 207327458 207327578 -10709580 - Charlie7 DNA MER1_type -2259 353 214 16644 145 44 8 chr3 207327709 207330894 -10706264 + L1PB1 LINE L1 15 3313 -3549 564 15 0 0 chr3 207330911 207330976 -10706182 + (CAATA)n Simple_repeat Simple_repeat 2 66 0 5528 165 18 4 chr3 207330977 207332685 -10704473 + L1PB1 LINE L1 5131 6862 -5 2111 175 15 5 chr3 207332724 207333113 -10704045 - MSTB LTR MaLR -33 393 1 2335 88 0 3 chr3 207333182 207333477 -10703681 + AluY SINE Alu 1 294 -17 3272 159 49 24 chr3 207333679 207334334 -10702824 + LTR51 LTR ERV1 1 671 0 2315 124 19 19 chr3 207334358 207334722 -10702436 - THE1B LTR MaLR 0 364 1 11084 104 23 3 chr3 207334722 207336272 -10700886 - THE1B-int LTR MaLR 0 1580 1 2217 135 19 19 chr3 207336272 207336636 -10700522 - THE1B LTR MaLR 0 364 1 501 232 59 101 chr3 207336659 207337103 -10700055 - HAL1 LINE L1 -206 2301 1877 2262 135 0 6 chr3 207337120 207337484 -10699674 - L1PB1 LINE L1 -8 6143 5782 291 54 0 0 chr3 207337490 207337527 -10699631 + (TG)n Simple_repeat Simple_repeat 2 38 0 208 156 0 0 chr3 207337527 207337559 -10699599 + (TA)n Simple_repeat Simple_repeat 2 33 0 3487 160 8 1 chr3 207337559 207338683 -10698475 - L1PB1 LINE L1 -359 5792 4664 8120 78 1 1 chr3 207338685 207339780 -10697378 - HERVL-B1 LTR ERVL -4559 1095 1 265 120 20 20 chr3 207339780 207339820 -10697338 - Ricksha DNA DNA -2343 903 864 660 36 0 0 chr3 207339821 207339904 -10697254 + (TA)n Simple_repeat Simple_repeat 2 84 0 336 262 14 14 chr3 207340052 207340193 -10696965 - HERVL-B1 LTR ERVL -5513 141 1 230 228 0 0 chr3 207340193 207340250 -10696908 - MLT2B1 LTR ERVL 0 520 464 328 299 0 0 chr3 207340253 207340340 -10696818 + L1MC4 LINE L1 6614 6700 -1342 316 69 0 35 chr3 207340375 207340433 -10696725 + (TA)n Simple_repeat Simple_repeat 2 57 0 2653 102 23 5 chr3 207340433 207340826 -10696332 - MLT2A1 LTR ERVL -44 400 1 602 183 6 59 chr3 207340826 207340890 -10696268 - MER53 DNA DNA -26 163 97 2107 164 25 55 chr3 207340890 207340944 -10696214 + MSTB LTR MaLR 2 56 -370 1857 146 3 47 chr3 207340944 207341266 -10695892 + AluSx SINE Alu 3 310 -2 2107 164 25 55 chr3 207341266 207341649 -10695509 + MSTB LTR MaLR 56 426 0 602 183 6 59 chr3 207341649 207341753 -10695405 - MER53 DNA DNA -92 97 4 748 166 50 7 chr3 207341768 207341907 -10695251 - MER20 DNA MER1_type -74 145 1 688 204 15 7 chr3 207341907 207342044 -10695114 + MER5A DNA MER1_type 47 184 -5 549 239 126 6 chr3 207342439 207342598 -10694560 + MER5B DNA MER1_type 1 178 0 409 248 46 111 chr3 207342993 207343388 -10693770 + L1MC5 LINE L1 7321 7689 -272 22 0 0 0 chr3 207343396 207343418 -10693740 + AT_rich Low_complexity Low_complexity 1 22 0 389 221 177 0 chr3 207343803 207343916 -10693242 - MIR SINE MIR -110 152 20 1194 133 15 20 chr3 207344170 207344373 -10692785 - L1PB2 LINE L1 -4 6147 5946 2335 95 3 0 chr3 207344550 207344854 -10692304 + AluSg SINE Alu 1 305 -5 191 250 19 19 chr3 207344920 207344972 -10692186 - L2 LINE L2 -2 3270 3219 545 269 80 93 chr3 207344986 207345310 -10691848 - L2 LINE L2 -12 3301 2982 640 285 101 19 chr3 207345325 207345532 -10691626 - MIR SINE MIR -19 243 20 1291 305 135 25 chr3 207345559 207346172 -10690986 - L2 LINE L2 -337 2977 2297 329 253 46 0 chr3 207346374 207346461 -10690697 + Charlie8 DNA MER1_type 104 194 -2223 210 286 41 20 chr3 207346554 207346652 -10690506 + MIR SINE MIR 48 147 -115 2218 102 7 16 chr3 207346949 207347253 -10689905 - AluSp SINE Alu -12 301 1 602 267 30 0 chr3 207347408 207347543 -10689615 - MIR SINE MIR -54 208 70 541 345 5 11 chr3 207348024 207348215 -10688943 + MIR3 SINE MIR 16 205 -3 1326 224 13 36 chr3 207349405 207349713 -10687445 - AluJo SINE Alu -11 301 1 218 260 0 0 chr3 207349905 207349955 -10687203 + MIR SINE MIR 105 154 -108 1590 167 14 100 chr3 207349966 207350386 -10686772 - MLT1B LTR MaLR -6 384 1 208 325 88 18 chr3 207352103 207352217 -10684941 + MIR3 SINE MIR 46 167 -41 404 306 77 24 chr3 207353228 207353398 -10683760 - MER5A DNA MER1_type -1 188 10 2310 123 6 11 chr3 207353398 207353756 -10683402 + L1PB2 LINE L1 5796 6151 0 422 114 14 0 chr3 207353769 207353839 -10683319 + (GGAA)n Simple_repeat Simple_repeat 2 72 0 506 143 66 0 chr3 207354364 207354455 -10682703 - LTR54 LTR ERV1 -413 97 1 263 291 82 18 chr3 207354457 207354567 -10682591 + MIR SINE MIR 124 240 -22 25 31 0 0 chr3 207354656 207354688 -10682470 + AT_rich Low_complexity Low_complexity 1 32 0 400 368 53 16 chr3 207356393 207356771 -10680387 + L2 LINE L2 1927 2318 -996 2029 130 3 0 chr3 207357073 207357406 -10679752 + AluSq SINE Alu 1 334 0 219 372 81 27 chr3 207357573 207357721 -10679437 + L2 LINE L2 3109 3264 -8 1033 254 53 62 chr3 207358049 207358498 -10678660 - L1MCb LINE L1 -5596 449 5 7323 35 10 6 chr3 207359251 207360233 -10676925 + L1PA4 LINE L1 5170 6155 0 3832 69 4 2 chr3 207360313 207360818 -10676340 - L1PA8 LINE L1 -3 6169 5664 1386 230 40 42 chr3 207360823 207361253 -10675905 - MER39 LTR ERV1 -19 688 260 268 313 46 0 chr3 207361916 207362111 -10675047 - L1ME3A LINE L1 -221 5949 5746 2496 198 42 4 chr3 207362209 207362734 -10674424 - MER89 LTR ERV1 -14 545 1 335 313 0 12 chr3 207363099 207363182 -10673976 - MIR SINE MIR -162 100 19 2151 110 3 0 chr3 207363261 207363553 -10673605 - AluSp SINE Alu -20 293 1 21 36 0 0 chr3 207364026 207364054 -10673104 + AT_rich Low_complexity Low_complexity 1 28 0 208 409 9 9 chr3 207364982 207365097 -10672061 + MIR SINE MIR 28 142 -66 464 184 23 0 chr3 207365302 207365389 -10671769 - L1PB4 LINE L1 -228 5928 5840 1432 249 25 6 chr3 207365804 207366158 -10671000 - MLT1A1 LTR MaLR -1 364 4 27 0 0 0 chr3 207366645 207366672 -10670486 + AT_rich Low_complexity Low_complexity 1 27 0 260 235 25 25 chr3 207366685 207366790 -10670368 + CT-rich Low_complexity Low_complexity 1 105 0 448 366 98 28 chr3 207366790 207367099 -10670059 - L2 LINE L2 -1 3312 3026 5645 119 41 18 chr3 207367099 207368469 -10668689 - L1PA13 LINE L1 0 6163 4781 448 366 98 28 chr3 207368469 207368757 -10668401 - L2 LINE L2 -287 3026 2667 614 274 153 43 chr3 207368766 207369229 -10667929 - LTR33A LTR ERVL -7 516 3 232 338 45 23 chr3 207369292 207369425 -10667733 - L2 LINE L2 -712 2602 2467 426 20 0 0 chr3 207369798 207369849 -10667309 + (TG)n Simple_repeat Simple_repeat 1 51 0 526 221 371 0 chr3 207371804 207371944 -10665214 + Tigger5 DNA MER2_type 1 192 -2131 416 210 0 12 chr3 207371943 207372024 -10665134 + Tigger5 DNA MER2_type 2244 2323 0 * 21 36 0 0 chr3 207372315 207372343 -10664815 + AT_rich Low_complexity Low_complexity 1 28 0 6089 226 49 33 chr3 207372952 207374689 -10662469 - L1 LINE L1 -2463 5102 3396 2093 140 0 3 chr3 207374689 207374989 -10662169 + AluSq SINE Alu 1 299 -14 6089 226 49 33 chr3 207374989 207376119 -10661039 - L1 LINE L1 -4169 3396 2179 9216 27 5 3 chr3 207376119 207377992 -10659166 - L1PA3 LINE L1 0 6155 4282 6089 226 49 33 chr3 207377992 207378280 -10658878 - L1 LINE L1 -5386 2179 1897 702 357 49 27 chr3 207378768 207379177 -10657981 - L1 LINE L1 -5537 1949 1532 29 0 0 0 chr3 207379421 207379450 -10657708 + AT_rich Low_complexity Low_complexity 1 29 0 247 299 68 17 chr3 207379475 207379592 -10657566 - MIR SINE MIR -75 187 65 1004 302 111 18 chr3 207380522 207380963 -10656195 - L2 LINE L2 -18 3295 2814 1820 175 47 19 chr3 207380963 207381328 -10655830 - THE1C LTR MaLR 0 375 1 8312 134 92 8 chr3 207381361 207381422 -10655736 - THE1C-int LTR MaLR -107 1473 1419 207 0 0 0 chr3 207381422 207381445 -10655713 + (TAA)n Simple_repeat Simple_repeat 2 24 0 8312 134 92 8 chr3 207381445 207382742 -10654416 - THE1C-int LTR MaLR -161 1419 1 1667 159 85 20 chr3 207382742 207383094 -10654064 - THE1C LTR MaLR 0 375 1 940 294 34 103 chr3 207383105 207383727 -10653431 - L2 LINE L2 -504 2810 2232 31 44 0 0 chr3 207384150 207384195 -10652963 + AT_rich Low_complexity Low_complexity 1 45 0 22 80 0 0 chr3 207384341 207384391 -10652767 + AT_rich Low_complexity Low_complexity 1 50 0 210 281 31 47 chr3 207384813 207384877 -10652281 - L2 LINE L2 0 3313 3251 252 400 69 0 chr3 207385323 207385453 -10651705 + MIR3 SINE MIR 15 153 -55 399 319 21 11 chr3 207385457 207385648 -10651510 - MLT1K LTR MaLR 0 588 396 607 334 167 39 chr3 207385809 207386260 -10650898 - L2 LINE L2 0 3313 2761 2558 40 0 3 chr3 207386260 207386561 -10650597 - AluY SINE Alu -11 300 1 607 334 167 39 chr3 207386561 207386678 -10650480 - L2 LINE L2 -552 2761 2660 185 159 23 0 chr3 207387124 207387168 -10649990 + (TA)n Simple_repeat Simple_repeat 1 45 0 507 138 37 20 chr3 207387196 207387487 -10649671 + (TA)n Simple_repeat Simple_repeat 1 295 0 252 0 0 0 chr3 207388061 207388089 -10649069 + (CA)n Simple_repeat Simple_repeat 2 29 0 2009 82 67 0 chr3 207388167 207388437 -10648721 - AluSp SINE Alu -12 301 14 272 290 88 46 chr3 207388445 207388683 -10648475 - L1ME LINE L1 -284 5886 5639 23 86 0 0 chr3 207388852 207388910 -10648248 + AT_rich Low_complexity Low_complexity 1 58 0 812 282 92 52 chr3 207388912 207389490 -10647668 - L1ME LINE L1 -748 5398 4798 225 343 69 60 chr3 207389572 207389788 -10647370 + MLT1J LTR MaLR 227 444 -67 484 354 29 18 chr3 207389888 207390162 -10646996 + LTR16B LTR ERVL 51 327 -137 670 278 52 10 chr3 207390176 207390370 -10646788 + MER58C DNA MER1_type 13 214 -1 290 291 16 39 chr3 207390381 207390508 -10646650 + LTR16B LTR ERVL 340 463 -1 1826 319 46 40 chr3 207390862 207390926 -10646232 + L2 LINE L2 2286 2348 -965 2199 125 3 0 chr3 207390926 207391231 -10645927 + AluSx SINE Alu 1 306 -6 1826 319 46 40 chr3 207391231 207392119 -10645039 + L2 LINE L2 2348 3243 -70 1669 175 3 7 chr3 207392208 207392493 -10644665 + AluJb SINE Alu 7 290 -22 180 0 0 0 chr3 207392493 207392513 -10644645 + (TA)n Simple_repeat Simple_repeat 2 21 0 26 0 0 0 chr3 207392733 207392759 -10644399 + AT_rich Low_complexity Low_complexity 1 26 0 457 264 92 12 chr3 207393753 207393916 -10643242 - MER5B DNA MER1_type -2 176 1 198 330 150 10 chr3 207393921 207394021 -10643137 - MIR3 SINE MIR -53 155 42 21 0 0 0 chr3 207394137 207394158 -10643000 + AT_rich Low_complexity Low_complexity 1 21 0 194 350 0 0 chr3 207395693 207395753 -10641405 - L3 LINE CR1 -3 1574 1515 351 298 75 40 chr3 207396206 207396412 -10640746 - MIR SINE MIR -57 151 4 315 335 45 7 chr3 207396787 207396942 -10640216 - MIR SINE MIR -64 198 38 264 335 78 30 chr3 207398737 207398967 -10638191 + MIR SINE MIR 1 241 -21 217 86 0 103 chr3 207401320 207401378 -10635780 + (TATAA)n Simple_repeat Simple_repeat 3 54 0 309 220 34 59 chr3 207401420 207401538 -10635620 + L1MC3 LINE L1 6538 6652 -1133 1884 121 76 0 chr3 207401653 207401943 -10635215 - AluSx SINE Alu 0 312 1 29 60 0 0 chr3 207401954 207402004 -10635154 + AT_rich Low_complexity Low_complexity 1 50 0 1886 136 3 32 chr3 207404108 207404416 -10632742 - AluSx SINE Alu -13 299 1 425 327 9 0 chr3 207404968 207405081 -10632077 - MER81 DNA DNA 0 114 1 230 386 15 23 chr3 207405108 207405240 -10631918 - L2 LINE L2 -470 2844 2714 191 276 13 40 chr3 207405337 207405413 -10631745 - L3b LINE CR1 -398 1185 1112 1113 241 8 4 chr3 207407360 207407597 -10629561 + MER8 DNA MER2_type 2 239 0 213 345 55 69 chr3 207408232 207408377 -10628781 - MIR3 SINE MIR -54 154 12 504 298 77 22 chr3 207408670 207408851 -10628307 - L3 LINE CR1 -5 1572 1382 360 309 149 63 chr3 207411910 207412305 -10624853 - L1M2 LINE L1 -5827 1022 594 273 75 0 0 chr3 207412716 207412756 -10624402 + (CA)n Simple_repeat Simple_repeat 2 41 0 2221 92 0 0 chr3 207413913 207414230 -10622928 + AluSx SINE Alu 1 317 0 301 294 128 9 chr3 207414695 207414804 -10622354 + MIR3 SINE MIR 81 202 -6 344 328 52 0 chr3 207414883 207414999 -10622159 - MIR SINE MIR -133 129 8 480 305 183 5 chr3 207415740 207415953 -10621205 + MIR SINE MIR 12 262 0 185 94 31 0 chr3 207416759 207416791 -10620367 + GA-rich Low_complexity Low_complexity 1 33 0 1376 216 84 18 chr3 207416791 207417134 -10620024 - MLT2D LTR ERVL -48 366 1 557 296 74 0 chr3 207417161 207417337 -10619821 - MIR SINE MIR -46 216 28 1513 207 11 4 chr3 207417715 207417990 -10619168 + AluJb SINE Alu 4 280 -32 460 256 41 58 chr3 207418083 207418255 -10618903 + MIR SINE MIR 86 254 -8 21 57 0 0 chr3 207418387 207418422 -10618736 + AT_rich Low_complexity Low_complexity 1 35 0 410 322 35 17 chr3 207418429 207418603 -10618555 + Charlie8 DNA MER1_type 6 182 -2235 251 196 0 0 chr3 207418643 207418689 -10618469 + Charlie8 DNA MER1_type 1357 1402 -1015 264 294 60 60 chr3 207419416 207419600 -10617558 - L2 LINE L2 -534 2780 2597 755 305 24 16 chr3 207420097 207420346 -10616812 + MIR SINE MIR 2 252 -10 542 161 270 0 chr3 207421171 207421308 -10615850 - MER3 DNA MER1_type 0 209 36 1498 208 87 46 chr3 207421432 207421913 -10615245 - MLT1D LTR MaLR -2 503 3 23 33 0 0 chr3 207422034 207422064 -10615094 + AT_rich Low_complexity Low_complexity 1 30 0 207 366 137 13 chr3 207422181 207422334 -10614824 + MIR3 SINE MIR 22 193 -15 493 28 28 0 chr3 207423238 207423309 -10613849 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 403 306 81 23 chr3 207424196 207424369 -10612789 + LTR33 LTR ERVL 5 187 -334 324 330 36 76 chr3 207424373 207424676 -10612482 + LTR16A1 LTR ERVL 5 295 -162 304 58 19 19 chr3 207424681 207424733 -10612425 + (TTTTC)n Simple_repeat Simple_repeat 2 53 0 2208 103 3 25 chr3 207424736 207425056 -10612102 - AluSq SINE Alu 0 313 1 559 250 6 64 chr3 207425056 207425145 -10612013 + LTR16A1 LTR ERVL 290 366 -91 2257 97 10 0 chr3 207425145 207425444 -10611714 + AluSc SINE Alu 1 302 -7 559 250 6 64 chr3 207425444 207425526 -10611632 + LTR16A1 LTR ERVL 366 451 -6 713 314 64 21 chr3 207426006 207426474 -10610684 + HERV16 LTR ERVL 2781 3277 -1908 570 360 36 11 chr3 207426505 207426947 -10610211 + HERV16 LTR ERVL 3404 3856 -1908 625 372 54 28 chr3 207427173 207427974 -10609184 + HERV16 LTR ERVL 4098 4919 -566 964 293 64 40 chr3 207428564 207428984 -10608174 + LTR16A1 LTR ERVL 11 440 -17 225 239 0 0 chr3 207429080 207429126 -10608032 + LTR33 LTR ERVL 473 518 -3 284 384 23 6 chr3 207429138 207429310 -10607848 - L2 LINE L2 -580 2734 2560 1931 210 12 2 chr3 207429576 207429981 -10607177 + L1MA9 LINE L1 3688 4096 -2050 2039 164 22 8 chr3 207429981 207430340 -10606818 - THE1B LTR MaLR 0 364 1 11669 94 6 6 chr3 207430340 207431919 -10605239 - THE1B-int LTR MaLR 0 1580 1 965 151 66 0 chr3 207431919 207432071 -10605087 - THE1B LTR MaLR 0 364 203 1021 189 14 0 chr3 207432071 207432288 -10604870 + L1MA9 LINE L1 4280 4499 -1647 * 4124 216 20 18 chr3 207432282 207433809 -10603349 + L1MA9 LINE L1 4744 6274 -38 30 45 0 0 chr3 207433811 207433855 -10603303 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr3 207434277 207434306 -10602852 + AT_rich Low_complexity Low_complexity 1 29 0 299 336 13 54 chr3 207435351 207435500 -10601658 + MIR3 SINE MIR 51 193 -15 227 356 122 54 chr3 207435614 207436154 -10601004 - L2 LINE L2 0 3272 2697 24 32 0 0 chr3 207436181 207436212 -10600946 + AT_rich Low_complexity Low_complexity 1 31 0 1422 195 66 70 chr3 207436274 207436700 -10600458 - MLT1C LTR MaLR 0 467 44 353 200 0 0 chr3 207436787 207436857 -10600301 - MIR SINE MIR -131 131 62 516 305 192 18 chr3 207436862 207437200 -10599958 - L2 LINE L2 -671 2643 2247 810 292 106 48 chr3 207437218 207437673 -10599485 - L2 LINE L2 0 3313 2833 2126 101 3 61 chr3 207437675 207438003 -10599155 + AluSc SINE Alu 1 309 0 302 0 26 0 chr3 207438049 207438087 -10599071 + (TG)n Simple_repeat Simple_repeat 2 40 0 3092 83 12 0 chr3 207438381 207438800 -10598358 - L1PA13 LINE L1 -5 6158 5735 1919 126 160 16 chr3 207438844 207439218 -10597940 + MSTA LTR MaLR 1 428 0 573 311 40 59 chr3 207439260 207439581 -10597577 + MLT1H LTR MaLR 40 354 -195 198 0 0 0 chr3 207440058 207440080 -10597078 + (TA)n Simple_repeat Simple_repeat 1 22 0 203 303 26 26 chr3 207440259 207440335 -10596823 + MIR SINE MIR 6 81 -181 742 316 105 26 chr3 207440335 207440636 -10596522 + LTR16B LTR ERVL 1 348 -116 1740 195 57 7 chr3 207440636 207441042 -10596116 + MSTB LTR MaLR 1 426 0 742 316 105 26 chr3 207441042 207441170 -10595988 + LTR16B LTR ERVL 348 464 0 388 269 97 15 chr3 207441171 207441305 -10595853 + MIR SINE MIR 105 249 -13 21 82 0 0 chr3 207441855 207441904 -10595254 + AT_rich Low_complexity Low_complexity 1 49 0 217 171 24 0 chr3 207442010 207442051 -10595107 + L2 LINE L2 3264 3305 -8 213 339 15 0 chr3 207442722 207442787 -10594371 + L2 LINE L2 3246 3311 -2 267 200 18 0 chr3 207442788 207442843 -10594315 + MIR SINE MIR 132 187 -75 298 321 64 14 chr3 207442962 207443102 -10594056 + L2 LINE L2 2612 2758 -556 435 238 115 41 chr3 207443311 207443554 -10593604 - Charlie7 DNA MER1_type -1936 676 416 1166 247 169 34 chr3 207443554 207443999 -10593159 - MLT1D LTR MaLR 0 505 1 439 259 122 0 chr3 207444027 207444174 -10592984 + MLT1E1 LTR MaLR 1 165 -489 234 198 146 52 chr3 207444226 207444322 -10592836 + MLT1K LTR MaLR 160 264 -324 21 36 0 0 chr3 207446551 207446579 -10590579 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr3 207448672 207448705 -10588453 + AT_rich Low_complexity Low_complexity 1 33 0 212 382 0 29 chr3 207450135 207450237 -10586921 - L2 LINE L2 -662 2652 2554 626 242 74 65 chr3 207450310 207450728 -10586430 - L1MEc LINE L1 -4139 2257 1836 227 308 15 0 chr3 207450856 207450921 -10586237 - L2 LINE L2 0 3272 3207 3026 181 14 78 chr3 207451000 207451335 -10585823 + LTR8 LTR ERV1 1 263 -428 1512 200 90 110 chr3 207451335 207451960 -10585198 + LTR9 LTR ERV1 1 612 0 3026 181 14 78 chr3 207451960 207452363 -10584795 + LTR8 LTR ERV1 263 691 0 400 227 0 13 chr3 207452456 207452531 -10584627 - Tigger7 DNA MER2_type -631 74 1 225 298 50 17 chr3 207452848 207453029 -10584129 - L1MEc LINE L1 -5073 1145 959 243 308 20 41 chr3 207453110 207453256 -10583902 - L1MEc LINE L1 -5465 931 789 429 70 0 0 chr3 207453272 207453329 -10583829 + (TA)n Simple_repeat Simple_repeat 1 57 0 348 296 84 72 chr3 207453521 207453950 -10583208 - HERVL LTR ERVL -1698 3956 3523 682 309 107 35 chr3 207454069 207454646 -10582512 - HERVL LTR ERVL -2009 3476 2818 375 278 122 0 chr3 207454668 207454783 -10582375 - HERVL LTR ERVL -3208 1788 1660 1533 345 50 25 chr3 207454907 207455788 -10581370 - HERVL LTR ERVL -3549 1447 545 681 283 30 21 chr3 207455954 207456187 -10580971 - HERVL LTR ERVL -4759 237 3 950 323 62 10 chr3 207456203 207456603 -10580555 - LTR16A LTR ERVL -14 436 16 260 319 55 57 chr3 207457636 207457763 -10579395 + MLT1K LTR MaLR 15 141 -447 1078 215 182 62 chr3 207457763 207458247 -10578911 + MLT1F LTR MaLR 1 542 0 260 319 55 57 chr3 207458247 207458492 -10578666 + MLT1K LTR MaLR 141 409 -179 194 420 9 9 chr3 207459766 207459878 -10577280 + MIR3 SINE MIR 2 113 -95 215 372 71 0 chr3 207460206 207460319 -10576839 + MER91C DNA MER1_type 2 122 -18 2869 87 36 5 chr3 207460353 207460745 -10576413 + MLT2A1 LTR ERVL 1 404 -40 221 172 16 0 chr3 207460745 207460809 -10576349 + (TA)n Simple_repeat Simple_repeat 2 66 0 234 83 0 0 chr3 207460817 207460853 -10576305 + MLT2A1 LTR ERVL 399 434 -19 628 154 17 8 chr3 207460877 207460994 -10576164 + MLT2A1 LTR ERVL 327 444 0 360 277 39 15 chr3 207461309 207461439 -10575719 + L2 LINE L2 3172 3304 -9 1119 250 7 10 chr3 207462075 207462371 -10574787 + AluJb SINE Alu 2 296 -6 396 0 0 0 chr3 207463983 207464027 -10573131 + (TG)n Simple_repeat Simple_repeat 1 44 0 228 231 15 31 chr3 207466606 207466671 -10570487 - MER5B DNA MER1_type -111 67 4 222 37 0 0 chr3 207467212 207467239 -10569919 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 289 299 110 31 chr3 207467521 207467648 -10569510 + MIR3 SINE MIR 52 188 -20 439 303 25 45 chr3 207467705 207467903 -10569255 + MIR SINE MIR 5 198 -64 432 289 70 0 chr3 207468520 207468676 -10568482 + MIR SINE MIR 47 213 -49 279 250 0 0 chr3 207469138 207469190 -10567968 + L2 LINE L2 3186 3237 -35 189 0 0 0 chr3 207469287 207469308 -10567850 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 400 31 0 47 chr3 207469665 207469729 -10567429 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 909 64 0 38 chr3 207469830 207469987 -10567171 + (TTCC)n Simple_repeat Simple_repeat 2 152 0 779 133 0 30 chr3 207470261 207470396 -10566762 + L1P LINE L1 5122 5252 -894 760 141 0 0 chr3 207470398 207470519 -10566639 + AluSp/q SINE Alu 191 311 -2 711 306 96 49 chr3 207472200 207472667 -10564491 - L3 LINE CR1 -37 1540 1052 195 42 0 0 chr3 207472880 207472904 -10564254 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 210 270 0 0 chr3 207473483 207473557 -10563601 + (CATA)n Simple_repeat Simple_repeat 2 75 0 495 335 73 9 chr3 207473591 207473824 -10563334 - MIR SINE MIR -1 261 14 336 286 77 0 chr3 207474467 207474558 -10562600 - L2 LINE L2 -17 3255 3158 375 357 39 39 chr3 207475553 207475735 -10561423 + MER5A DNA MER1_type 8 189 0 453 242 0 0 chr3 207476077 207476168 -10560990 - Tigger7 DNA MER2_type 0 2587 2497 * 1302 209 46 7 chr3 207476157 207476439 -10560719 - Tigger7 DNA MER2_type -440 293 1 238 304 0 0 chr3 207476739 207476808 -10560350 + CT-rich Low_complexity Low_complexity 1 69 0 221 319 137 26 chr3 207477157 207477383 -10559775 - MIR SINE MIR -10 252 2 358 226 59 20 chr3 207478275 207478377 -10558781 - MIR SINE MIR -37 225 120 22 56 0 0 chr3 207479553 207479589 -10557569 + AT_rich Low_complexity Low_complexity 1 36 0 2062 108 4 0 chr3 207479968 207480270 -10556888 + AluSc SINE Alu 1 303 0 1463 217 0 3 chr3 207480497 207480792 -10556366 - AluJo SINE Alu -10 302 9 243 323 43 37 chr3 207481227 207481388 -10555770 - L2 LINE L2 -213 3059 2898 258 256 71 119 chr3 207481603 207481771 -10555387 + MIR3 SINE MIR 22 181 -27 186 256 18 42 chr3 207481950 207482118 -10555040 + CT-rich Low_complexity Low_complexity 4 167 0 503 378 69 14 chr3 207482126 207482475 -10554683 - L2 LINE L2 -6 3266 2899 384 352 52 46 chr3 207482614 207482921 -10554237 - L2 LINE L2 -602 2712 2404 529 333 24 9 chr3 207483086 207483299 -10553859 + MIR SINE MIR 47 262 0 2183 115 0 7 chr3 207483461 207483766 -10553392 - AluSx SINE Alu -9 303 1 197 222 0 0 chr3 207484038 207484074 -10553084 - L2 LINE L2 -15 3298 3263 30 59 0 0 chr3 207484170 207484221 -10552937 + AT_rich Low_complexity Low_complexity 1 51 0 255 31 0 0 chr3 207485595 207485627 -10551531 + (TAGA)n Simple_repeat Simple_repeat 1 32 0 196 243 0 0 chr3 207486210 207486247 -10550911 - L2 LINE L2 -10 3303 3267 341 296 16 72 chr3 207486254 207486379 -10550779 + L2 LINE L2 3153 3270 -2 599 322 39 12 chr3 207486614 207486872 -10550286 - MER102b DNA MER1_type 0 341 77 1121 244 109 30 chr3 207487914 207488316 -10548842 - MLT1C LTR MaLR 0 467 34 358 205 145 51 chr3 207488458 207488575 -10548583 - MIR SINE MIR -62 200 73 23 54 0 0 chr3 207488585 207488622 -10548536 + AT_rich Low_complexity Low_complexity 1 37 0 2130 71 10 27 chr3 207488935 207489231 -10547927 + AluSp SINE Alu 1 291 -22 3462 140 53 21 chr3 207489290 207489463 -10547695 - L1MA5A LINE L1 -38 6259 6093 2051 129 3 59 chr3 207489463 207489820 -10547338 + MER1B DNA MER1_type 1 337 0 3462 140 53 21 chr3 207489820 207489949 -10547209 - L1MA5A LINE L1 -204 6093 5970 2128 95 20 0 chr3 207489949 207490244 -10546914 - AluSc SINE Alu -8 301 1 3462 140 53 21 chr3 207490244 207490563 -10546595 - L1MA5A LINE L1 -327 5970 5617 446 197 129 30 chr3 207490587 207490732 -10546426 + MIR SINE MIR 13 177 -31 25 65 0 0 chr3 207491537 207491583 -10545575 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr3 207491664 207491685 -10545473 + AT_rich Low_complexity Low_complexity 1 21 0 258 308 43 51 chr3 207492351 207492468 -10544690 + L2 LINE L2 3156 3271 -1 212 246 0 0 chr3 207492594 207492651 -10544507 + GA-rich Low_complexity Low_complexity 2 58 0 1982 145 0 13 chr3 207492759 207493070 -10544088 + AluSx SINE Alu 1 307 -5 25 31 0 0 chr3 207493630 207493662 -10543496 + AT_rich Low_complexity Low_complexity 1 32 0 316 264 22 0 chr3 207493681 207493772 -10543386 - L1ME4a LINE L1 -70 6051 5959 38 61 0 0 chr3 207494037 207494103 -10543055 + AT_rich Low_complexity Low_complexity 1 66 0 2052 118 20 3 chr3 207494861 207495166 -10541992 + AluSx SINE Alu 1 310 -2 231 331 60 78 chr3 207495356 207495522 -10541636 - MIR SINE MIR -32 230 68 2434 63 3 0 chr3 207496453 207496753 -10540405 - AluY SINE Alu -10 301 1 21 0 0 0 chr3 207496874 207496895 -10540263 + AT_rich Low_complexity Low_complexity 1 21 0 309 205 39 26 chr3 207498484 207498562 -10538596 - L1MC4 LINE L1 -1350 6692 6614 249 253 60 0 chr3 207498610 207498693 -10538465 + L1MC4 LINE L1 6615 6702 -1340 288 310 0 0 chr3 207498879 207498995 -10538163 + (TA)n Simple_repeat Simple_repeat 2 117 0 227 279 0 35 chr3 207498997 207499083 -10538075 - L1MC4 LINE L1 -1339 6703 6621 200 312 32 0 chr3 207499085 207499239 -10537919 + (TA)n Simple_repeat Simple_repeat 1 159 0 199 333 13 13 chr3 207500580 207500658 -10536500 + L2 LINE L2 3195 3272 0 2252 78 3 0 chr3 207500694 207500978 -10536180 + AluSc SINE Alu 1 285 -24 189 0 0 0 chr3 207500981 207501002 -10536156 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 345 282 161 31 chr3 207502567 207502858 -10534300 - L1MC5 LINE L1 -322 7639 7311 287 160 43 0 chr3 207503006 207503100 -10534058 + (TA)n Simple_repeat Simple_repeat 1 98 0 454 118 0 15 chr3 207503136 207503204 -10533954 - THE1-int LTR MaLR -448 1132 1066 376 314 51 17 chr3 207503278 207503580 -10533578 - L1MC4 LINE L1 -740 7302 6993 379 200 0 0 chr3 207503589 207503659 -10533499 + MER94 DNA DNA 11 80 -54 391 258 45 2 chr3 207503746 207503883 -10533275 - L1MC4 LINE L1 -812 6973 6870 407 321 19 6 chr3 207504094 207504256 -10532902 - MER52A LTR ERV1 0 1755 1592 1040 262 33 72 chr3 207504266 207504902 -10532256 - MER52A LTR ERV1 -50 970 275 1145 248 58 25 chr3 207504978 207505337 -10531821 - L1ME3A LINE L1 -185 5985 5615 1580 150 63 79 chr3 207505338 207505719 -10531439 - THE1C LTR MaLR 0 375 1 9506 133 47 8 chr3 207505719 207507240 -10529918 - THE1C-int LTR MaLR 0 1580 1 1702 141 50 81 chr3 207507243 207507625 -10529533 - THE1C LTR MaLR -3 372 3 818 283 33 29 chr3 207507628 207508227 -10528931 - L1ME3A LINE L1 -555 5615 5014 532 152 88 24 chr3 207508250 207508375 -10528783 - L1ME3A LINE L1 -11 6159 6027 31 0 0 0 chr3 207508538 207508569 -10528589 + AT_rich Low_complexity Low_complexity 1 31 0 2139 103 3 0 chr3 207508570 207508852 -10528306 - AluSc SINE Alu -26 283 1 240 35 0 0 chr3 207508986 207509015 -10528143 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 36 0 0 chr3 207510017 207510045 -10527113 + AT_rich Low_complexity Low_complexity 1 28 0 1517 162 19 35 chr3 207510104 207510256 -10526902 + L1MA8 LINE L1 5786 5939 -352 1920 123 0 0 chr3 207510256 207510524 -10526634 + AluSp SINE Alu 34 301 -12 1517 162 19 35 chr3 207510524 207510686 -10526472 + L1MA8 LINE L1 5939 6095 -196 531 316 43 66 chr3 207510720 207511207 -10525951 - L1ME LINE L1 -302 5819 5344 232 318 0 0 chr3 207511283 207511346 -10525812 - MER113 DNA MER1_type? -5 516 454 321 232 113 60 chr3 207511768 207511919 -10525239 - L1MC5 LINE L1 -187 7774 7616 21 0 0 0 chr3 207512471 207512492 -10524666 + AT_rich Low_complexity Low_complexity 1 21 0 180 111 0 0 chr3 207513610 207513637 -10523521 + (T)n Simple_repeat Simple_repeat 1 27 0 1230 120 173 45 chr3 207514361 207514627 -10522531 + AluSx SINE Alu 1 300 -12 360 333 80 22 chr3 207515034 207515172 -10521986 + MIR3 SINE MIR 2 147 -61 389 20 20 0 chr3 207515185 207515235 -10521923 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 233 310 10 66 chr3 207515474 207515671 -10521487 - HAL1 LINE L1 -1 2506 2321 225 169 28 14 chr3 207515686 207515757 -10521401 + (TTAA)n Simple_repeat Simple_repeat 1 72 0 48 43 0 0 chr3 207515842 207515911 -10521247 + AT_rich Low_complexity Low_complexity 1 69 0 227 235 118 88 chr3 207516350 207516520 -10520638 - HAL1 LINE L1 -2331 176 2 581 307 126 29 chr3 207516821 207517337 -10519821 - L2 LINE L2 -85 3228 2689 4266 200 68 2 chr3 207517339 207518220 -10518938 + L1MC2 LINE L1 5380 6318 -26 485 215 100 23 chr3 207518252 207518382 -10518776 - L2 LINE L2 -853 2461 2322 21 0 0 0 chr3 207518912 207518933 -10518225 + AT_rich Low_complexity Low_complexity 1 21 0 266 244 12 0 chr3 207520196 207520278 -10516880 + (TA)n Simple_repeat Simple_repeat 2 84 0 740 265 45 0 chr3 207520364 207520564 -10516594 + MER58A DNA MER1_type 12 220 -4 358 329 53 12 chr3 207520562 207520732 -10516426 + MARNA DNA Mariner 338 514 -72 * 398 264 116 7 chr3 207520901 207521056 -10516102 + MIR SINE MIR 91 262 0 28 48 0 0 chr3 207521150 207521192 -10515966 + AT_rich Low_complexity Low_complexity 1 42 0 610 261 101 14 chr3 207522017 207522224 -10514934 + MIR SINE MIR 38 262 0 21 36 0 0 chr3 207523096 207523124 -10514034 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr3 207523164 207523199 -10513959 + AT_rich Low_complexity Low_complexity 1 35 0 2758 127 21 0 chr3 207523435 207523854 -10513304 + MSTA LTR MaLR 1 428 0 1773 174 19 43 chr3 207523933 207524306 -10512852 + THE1B LTR MaLR 1 364 0 298 259 19 19 chr3 207524705 207524813 -10512345 + CT-rich Low_complexity Low_complexity 1 108 0 2150 164 10 25 chr3 207524831 207525227 -10511931 - MLT1B LTR MaLR 0 390 1 6231 23 3 3 chr3 207527247 207527974 -10509184 + L1PA3 LINE L1 5429 6155 0 2501 17 41 0 chr3 207528620 207528915 -10508243 + AluY SINE Alu 2 308 -3 258 180 0 0 chr3 207530372 207530433 -10506725 + (TCCA)n Simple_repeat Simple_repeat 1 61 0 2362 57 0 3 chr3 207530498 207530795 -10506363 + AluY SINE Alu 1 296 -15 396 380 54 9 chr3 207530795 207531019 -10506139 + L3 LINE CR1 1259 1492 -85 310 235 0 59 chr3 207532418 207532520 -10504638 + L1ME LINE L1 5730 5825 -296 23 78 0 0 chr3 207532756 207532807 -10504351 + AT_rich Low_complexity Low_complexity 1 51 0 240 59 0 0 chr3 207532857 207532891 -10504267 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 641 248 29 70 chr3 207533858 207534100 -10503058 - MIR SINE MIR -21 241 10 22 0 0 0 chr3 207534210 207534232 -10502926 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 207534566 207534588 -10502570 + AT_rich Low_complexity Low_complexity 1 22 0 278 303 37 28 chr3 207534764 207534873 -10502285 + MIR SINE MIR 1 110 -152 2233 88 3 0 chr3 207535252 207535536 -10501622 - AluSx SINE Alu -27 285 1 195 214 0 54 chr3 207536456 207536512 -10500646 + L3b LINE CR1 1527 1579 -4 259 293 0 13 chr3 207540208 207540283 -10496875 + Charlie4 DNA MER1_type 1888 1961 0 229 343 0 0 chr3 207540357 207540427 -10496731 - L2 LINE L2 -2 3270 3201 1958 119 41 63 chr3 207540678 207540997 -10496161 - AluSx SINE Alu 0 312 1 317 305 142 16 chr3 207541506 207541696 -10495462 + L1MC4 LINE L1 7829 8042 0 239 188 43 14 chr3 207542696 207542765 -10494393 - MLT1D LTR MaLR -8 497 427 504 307 101 29 chr3 207544568 207545083 -10492075 + L1MC4a LINE L1 5385 5936 -1872 735 196 12 6 chr3 207546260 207546423 -10490735 - L1MD2 LINE L1 -7 6352 6189 283 164 96 0 chr3 207546444 207546517 -10490641 - L1MA4A LINE L1 -8 6295 6216 977 275 144 14 chr3 207547523 207547883 -10489275 + L2 LINE L2 1912 2318 -996 716 305 4 13 chr3 207547881 207548120 -10489038 - L2 LINE L2 -225 3088 2852 * 1549 314 37 37 chr3 207548187 207548598 -10488560 + L2 LINE L2 2299 2709 -604 2030 112 3 17 chr3 207548598 207548885 -10488273 - AluSx SINE Alu -17 295 13 1549 314 37 37 chr3 207548885 207549501 -10487657 + L2 LINE L2 2709 3312 -1 21 0 0 0 chr3 207550374 207550395 -10486763 + AT_rich Low_complexity Low_complexity 1 21 0 199 286 14 0 chr3 207550559 207550629 -10486529 + MIR SINE MIR 179 249 -13 951 174 152 112 chr3 207550883 207551330 -10485828 + MER31B LTR ERV1 2 466 0 2103 103 14 0 chr3 207551496 207551778 -10485380 + AluSq SINE Alu 1 286 -27 24 0 0 0 chr3 207551778 207551802 -10485356 + AT_rich Low_complexity Low_complexity 1 24 0 6047 58 1 0 chr3 207552396 207553212 -10483946 + L1P LINE L1 4229 5045 -1101 4298 87 7 2 chr3 207553214 207553814 -10483344 + L1P LINE L1 2 604 -5542 224 114 68 0 chr3 207553973 207554017 -10483141 + (ATAGG)n Simple_repeat Simple_repeat 4 50 0 220 247 190 63 chr3 207556500 207556658 -10480500 - L2 LINE L2 -1014 2300 2123 507 257 181 0 chr3 207556687 207556831 -10480327 - MER91B DNA MER1_type -2 188 19 257 286 97 26 chr3 207556853 207557007 -10480151 - L2 LINE L2 -1219 2095 1931 3225 111 14 24 chr3 207557087 207557581 -10479577 + LTR22B LTR ERVK 1 489 -3 858 163 0 0 chr3 207658786 207659146 -10378012 + (CATTC)n Satellite Satellite 1 360 0 1033 115 10 13 chr3 207659157 207659638 -10377520 + (CATTC)n Satellite Satellite 2 303 0 1059 150 0 4 chr3 207659649 207660190 -10376968 + (CATTC)n Satellite Satellite 1 538 0 600 196 0 0 chr3 207660228 207660407 -10376751 + (CATTC)n Satellite Satellite 1 179 0 215 130 22 43 chr3 207660408 207660454 -10376704 + HSATII Satellite Satellite 35 79 -91 831 161 0 0 chr3 207660463 207660643 -10376515 + (CATTC)n Satellite Satellite 1 180 0 1092 111 0 0 chr3 207660663 207660843 -10376315 + (CATTC)n Satellite Satellite 1 180 0 899 133 0 6 chr3 207660864 207661044 -10376114 + (CATTC)n Satellite Satellite 2 180 0 844 134 4 4 chr3 207661080 207661344 -10375814 + (CATTC)n Satellite Satellite 1 264 0 1110 100 0 0 chr3 207661364 207661544 -10375614 + (CATTC)n Satellite Satellite 1 180 0 912 137 0 12 chr3 207661555 207661990 -10375168 + (CATTC)n Satellite Satellite 1 429 0 930 122 0 0 chr3 207662015 207662195 -10374963 + (CATTC)n Satellite Satellite 1 180 0 1043 148 3 6 chr3 207662206 207662735 -10374423 + (CATTC)n Satellite Satellite 2 350 0 282 156 0 0 chr3 207662746 207662810 -10374348 + (CATTC)n Satellite Satellite 3 66 0 1033 128 2 16 chr3 207662824 207663544 -10373614 + (CATTC)n Satellite Satellite 1 709 0 1059 136 3 12 chr3 207663576 207664166 -10372992 + (CATTC)n Satellite Satellite 1 584 0 781 101 5 48 chr3 207664199 207664387 -10372771 + (CATTC)n Satellite Satellite 1 180 0 564 169 0 0 chr3 207664398 207664528 -10372630 + (CATTC)n Satellite Satellite 2 131 0 1066 102 3 29 chr3 207664542 207664922 -10372236 + (CATTC)n Satellite Satellite 1 370 0 927 137 6 0 chr3 207664933 207665284 -10371874 + (CATTC)n Satellite Satellite 1 353 0 972 136 5 24 chr3 207665316 207665675 -10371483 + (CATTC)n Satellite Satellite 2 353 0 857 119 0 20 chr3 207665690 207665940 -10371218 + (CATTC)n Satellite Satellite 1 244 0 1095 133 2 7 chr3 207665966 207666399 -10370759 + (CATTC)n Satellite Satellite 1 431 0 852 142 0 0 chr3 207666466 207666686 -10370472 + (CATTC)n Satellite Satellite 1 220 0 954 148 0 11 chr3 207666697 207667046 -10370112 + (CATTC)n Satellite Satellite 4 346 0 216 122 0 0 chr3 207667059 207667100 -10370058 + (CATTC)n Satellite Satellite 1 41 0 1086 132 0 5 chr3 207667119 207667743 -10369415 + (CATTC)n Satellite Satellite 1 620 0 722 156 0 11 chr3 207667763 207667942 -10369216 + (CATTC)n Satellite Satellite 1 177 0 800 146 6 0 chr3 207667986 207668164 -10368994 + (GAATG)n Satellite Satellite 2 180 0 927 129 0 0 chr3 207668200 207668378 -10368780 + (GAATG)n Satellite Satellite 3 180 0 240 59 0 0 chr3 207668394 207668428 -10368730 + (GAATG)n Satellite Satellite 2 35 0 893 105 0 42 chr3 207668449 207668693 -10368465 + (GAATG)n Satellite Satellite 1 233 0 684 175 0 0 chr3 207668714 207668874 -10368284 + (GAATG)n Satellite Satellite 1 160 0 942 130 0 0 chr3 207668886 207669063 -10368095 + (GAATG)n Satellite Satellite 2 178 0 927 162 3 6 chr3 207669078 207669706 -10367452 + (GAATG)n Satellite Satellite 1 657 0 185 65 32 0 chr3 207669706 207669737 -10367421 + (GAATG)n Satellite Satellite 1 32 0 981 151 0 0 chr3 207669962 207670246 -10366912 + (GAATG)n Satellite Satellite 1 284 0 206 103 0 0 chr3 207670253 207670282 -10366876 + (TAATG)n Simple_repeat Simple_repeat 1 29 0 1068 134 0 4 chr3 207670284 207670641 -10366517 + (GAATG)n Satellite Satellite 1 534 0 886 71 0 86 chr3 207670667 207670864 -10366294 + (GAATG)n Satellite Satellite 1 180 0 687 173 0 0 chr3 207670880 207671048 -10366110 + (GAATG)n Satellite Satellite 2 169 0 1056 127 1 3 chr3 207671059 207671607 -10365551 + (GAATG)n Satellite Satellite 1 726 0 839 135 0 27 chr3 207671628 207671813 -10365345 + (GAATG)n Satellite Satellite 1 180 0 1136 94 9 0 chr3 207671841 207672085 -10365073 + (GAATG)n Satellite Satellite 1 246 0 922 117 6 6 chr3 207672096 207672276 -10364882 + (GAATG)n Satellite Satellite 1 180 0 1148 131 3 10 chr3 207672287 207672580 -10364578 + (GAATG)n Satellite Satellite 1 655 0 1148 109 3 0 chr3 207672580 207672947 -10364211 + (GAATG)n Satellite Satellite 1 368 0 930 102 5 43 chr3 207673038 207673225 -10363933 + (GAATG)n Satellite Satellite 1 180 0 993 123 0 0 chr3 207673250 207673429 -10363729 + (GAATG)n Satellite Satellite 2 180 0 977 126 4 11 chr3 207673443 207673788 -10363370 + (GAATG)n Satellite Satellite 1 520 0 977 134 3 1 chr3 207673560 207674037 -10363121 + (GAATG)n Satellite Satellite 2 642 0 1239 94 2 0 chr3 207673808 207674251 -10362907 + (GAATG)n Satellite Satellite 1 444 0 1067 130 5 7 chr3 207674365 207692822 -10344336 + BSR/Beta Satellite Satellite 1 18415 -8 1067 128 5 7 chr3 207692834 207702774 -10334384 + BSR/Beta Satellite Satellite 1 9918 -22 1067 127 6 7 chr3 207702883 207714210 -10322948 + BSR/Beta Satellite Satellite 1 11311 -58 191 114 0 45 chr3 207714318 207714362 -10322796 + (CATTC)n Simple_repeat Simple_repeat 5 46 0 314 113 0 16 chr3 207714390 207714452 -10322706 + (CATTC)n Satellite Satellite 2 62 0 683 162 0 6 chr3 207714465 207714632 -10322526 + (CATTC)n Satellite Satellite 5 170 0 1077 103 0 0 chr3 207714647 207714822 -10322336 + (CATTC)n Satellite Satellite 1 175 0 712 146 0 32 chr3 207714853 207715038 -10322120 + (CATTC)n Satellite Satellite 2 180 0 1065 111 0 0 chr3 207715054 207715457 -10321701 + (CATTC)n Satellite Satellite 1 403 0 600 167 0 0 chr3 207715469 207715613 -10321545 + (CATTC)n Satellite Satellite 2 145 0 936 128 0 0 chr3 207715633 207715812 -10321346 + (CATTC)n Satellite Satellite 1 179 0 1038 158 0 7 chr3 207715829 207717391 -10319767 + (CATTC)n Satellite Satellite 1 1551 0 890 135 6 0 chr3 207717423 207717601 -10319557 + (CATTC)n Satellite Satellite 2 180 0 180 0 0 0 chr3 207717613 207717633 -10319525 + (CATTC)n Satellite Satellite 3 22 0 751 132 0 53 chr3 207717646 207717836 -10319322 + (CATTC)n Satellite Satellite 1 180 0 864 146 0 0 chr3 207717862 207718040 -10319118 + (CATTC)n Satellite Satellite 2 179 0 1179 106 0 0 chr3 207718057 207718426 -10318732 + (CATTC)n Satellite Satellite 1 369 0 1080 135 0 0 chr3 207718437 207719051 -10318107 + (CATTC)n Satellite Satellite 1 614 0 387 125 0 0 chr3 207719063 207719135 -10318023 + (CATTC)n Satellite Satellite 3 74 0 1161 73 0 0 chr3 207719147 207719312 -10317846 + (CATTC)n Satellite Satellite 2 166 0 866 119 0 27 chr3 207719341 207719526 -10317632 + (CATTC)n Satellite Satellite 1 180 0 723 179 0 0 chr3 207719558 207719866 -10317292 + (CATTC)n Satellite Satellite 1 308 0 1200 133 0 2 chr3 207719877 207720426 -10316732 + (CATTC)n Satellite Satellite 1 547 0 942 138 0 12 chr3 207720443 207720942 -10316216 + (CATTC)n Satellite Satellite 1 492 0 903 149 3 7 chr3 207720953 207721248 -10315910 + (CATTC)n Satellite Satellite 2 295 0 840 151 0 0 chr3 207721282 207721461 -10315697 + (CATTC)n Satellite Satellite 2 180 0 972 136 0 17 chr3 207721487 207722145 -10315013 + (CATTC)n Satellite Satellite 1 647 0 726 132 0 53 chr3 207722171 207722361 -10314797 + (CATTC)n Satellite Satellite 1 180 0 513 172 0 0 chr3 207722382 207722504 -10314654 + (CATTC)n Satellite Satellite 2 123 0 791 130 0 27 chr3 207722517 207722701 -10314457 + (CATTC)n Satellite Satellite 2 180 0 1008 141 0 0 chr3 207722712 207723151 -10314007 + (CATTC)n Satellite Satellite 1 439 0 972 155 0 7 chr3 207723163 207723451 -10313707 + (CATTC)n Satellite Satellite 3 287 0 906 140 0 0 chr3 207723472 207723651 -10313507 + (CATTC)n Satellite Satellite 2 180 0 942 144 3 3 chr3 207723682 207724033 -10313125 + (CATTC)n Satellite Satellite 1 351 0 816 156 0 0 chr3 207724056 207724236 -10312922 + (CATTC)n Satellite Satellite 1 180 0 242 210 0 16 chr3 207724392 207724454 -10312704 + GA-rich Low_complexity Low_complexity 2 62 0 679 182 6 0 chr3 207724454 207724630 -10312528 + (GAATG)n Satellite Satellite 4 180 0 966 150 3 3 chr3 207724644 207725053 -10312105 + (GAATG)n Satellite Satellite 1 409 0 831 155 0 0 chr3 207725068 207725242 -10311916 + (GAATG)n Satellite Satellite 2 175 0 972 138 0 8 chr3 207725253 207725622 -10311536 + (GAATG)n Satellite Satellite 1 366 0 486 183 0 0 chr3 207725636 207725756 -10311402 + (GAATG)n Satellite Satellite 2 121 0 1197 112 0 2 chr3 207725769 207726592 -10310566 + (GAATG)n Satellite Satellite 1 1000 0 768 154 0 0 chr3 207726630 207726845 -10310313 + (GAATG)n Satellite Satellite 1 215 0 1122 119 0 1 chr3 207726857 207727376 -10309782 + (GAATG)n Satellite Satellite 1 697 0 907 108 0 27 chr3 207727387 207727572 -10309586 + (GAATG)n Satellite Satellite 1 180 0 910 122 0 17 chr3 207727591 207727834 -10309324 + (GAATG)n Satellite Satellite 1 238 0 1059 101 0 0 chr3 207727855 207728070 -10309088 + (GAATG)n Satellite Satellite 1 215 0 745 151 6 6 chr3 207728082 207728254 -10308904 + (GAATG)n Satellite Satellite 3 174 0 837 116 0 0 chr3 207728279 207728425 -10308733 + (GAATG)n Satellite Satellite 2 147 0 972 133 0 0 chr3 207728436 207728616 -10308542 + (GAATG)n Satellite Satellite 1 180 0 720 173 0 0 chr3 207728636 207728815 -10308343 + (GAATG)n Satellite Satellite 1 179 0 924 118 0 0 chr3 207728841 207729054 -10308104 + (GAATG)n Satellite Satellite 1 213 0 774 167 0 0 chr3 207729075 207729255 -10307903 + (GAATG)n Satellite Satellite 1 180 0 1188 104 1 15 chr3 207729284 207729560 -10307598 + (GAATG)n Satellite Satellite 1 433 0 957 110 0 0 chr3 207729560 207729723 -10307435 + (GAATG)n Satellite Satellite 3 165 0 726 160 0 0 chr3 207729841 207730059 -10307099 + (GAATG)n Satellite Satellite 1 218 0 1308 108 2 0 chr3 207730070 207730708 -10306450 + (GAATG)n Satellite Satellite 1 639 0 1038 122 2 26 chr3 207730730 207731346 -10305812 + (GAATG)n Satellite Satellite 1 601 0 965 119 7 4 chr3 207731376 207731650 -10305508 + (GAATG)n Satellite Satellite 1 275 0 861 147 0 11 chr3 207731661 207732135 -10305023 + (GAATG)n Satellite Satellite 1 469 0 972 121 0 0 chr3 207732156 207732329 -10304829 + (GAATG)n Satellite Satellite 3 175 0 938 122 0 17 chr3 207732356 207732537 -10304621 + (GAATG)n Satellite Satellite 3 180 0 969 138 0 18 chr3 207732564 207732930 -10304228 + (GAATG)n Satellite Satellite 2 534 0 1127 120 2 0 chr3 207732945 207733390 -10303768 + (GAATG)n Satellite Satellite 1 446 0 963 129 0 0 chr3 207733404 207733582 -10303576 + (GAATG)n Satellite Satellite 3 180 0 1065 103 0 0 chr3 207733615 207733790 -10303368 + (GAATG)n Satellite Satellite 5 179 0 1191 103 0 10 chr3 207733813 207734437 -10302721 + (GAATG)n Satellite Satellite 2 794 0 824 129 0 5 chr3 207734449 207734662 -10302496 + (GAATG)n Satellite Satellite 1 211 0 1032 150 0 0 chr3 207734685 207735044 -10302114 + (GAATG)n Satellite Satellite 1 359 0 1074 94 0 0 chr3 207735060 207735268 -10301890 + (GAATG)n Satellite Satellite 1 208 0 458 208 7 0 chr3 207735288 207735437 -10301721 + (GAATG)n Satellite Satellite 3 152 0 1110 139 0 0 chr3 207735449 207735793 -10301365 + (GAATG)n Satellite Satellite 1 344 0 822 162 0 0 chr3 207735804 207735983 -10301175 + (GAATG)n Satellite Satellite 2 180 0 1167 83 0 0 chr3 207735995 207736202 -10300956 + (GAATG)n Satellite Satellite 1 207 0 897 140 0 0 chr3 207736224 207736402 -10300756 + (GAATG)n Satellite Satellite 3 180 0 621 119 0 72 chr3 207736429 207736623 -10300535 + (GAATG)n Satellite Satellite 1 180 0 936 157 0 7 chr3 207736641 207736882 -10300276 + (GAATG)n Satellite Satellite 2 416 0 1143 113 0 20 chr3 207736893 207737502 -10299656 + (GAATG)n Satellite Satellite 1 773 0 1161 129 0 0 chr3 207737513 207738326 -10298832 + (GAATG)n Satellite Satellite 1 813 0 871 101 0 53 chr3 207738338 207738526 -10298632 + (GAATG)n Satellite Satellite 3 180 0 954 160 0 9 chr3 207738544 207738998 -10298160 + (GAATG)n Satellite Satellite 2 627 0 894 104 6 33 chr3 207739032 207739215 -10297943 + (GAATG)n Satellite Satellite 3 180 0 939 123 0 0 chr3 207739237 207739479 -10297679 + (GAATG)n Satellite Satellite 1 242 0 1185 83 0 0 chr3 207739492 207739672 -10297486 + (GAATG)n Satellite Satellite 1 180 0 1128 128 1 6 chr3 207739698 207740428 -10296730 + (GAATG)n Satellite Satellite 1 894 0 870 131 0 0 chr3 207740428 207740596 -10296562 + (GAATG)n Satellite Satellite 2 169 0 1137 104 0 0 chr3 207740979 207741211 -10295947 + (GAATG)n Satellite Satellite 1 232 0 1020 126 0 10 chr3 207741227 207741625 -10295533 + (GAATG)n Satellite Satellite 1 393 0 1146 122 1 4 chr3 207741639 207742163 -10294995 + (GAATG)n Satellite Satellite 3 699 0 974 143 2 0 chr3 207742176 207742655 -10294503 + (GAATG)n Satellite Satellite 1 480 0 1002 117 0 0 chr3 207742668 207742847 -10294311 + (GAATG)n Satellite Satellite 2 180 0 771 133 0 0 chr3 207742861 207743012 -10294146 + (GAATG)n Satellite Satellite 2 152 0 1059 91 11 6 chr3 207743023 207743199 -10293959 + (GAATG)n Satellite Satellite 4 180 0 680 169 0 27 chr3 207743212 207743396 -10293762 + (GAATG)n Satellite Satellite 1 179 0 870 132 0 0 chr3 207743409 207743568 -10293590 + (GAATG)n Satellite Satellite 4 162 0 963 120 0 18 chr3 207743579 207743860 -10293298 + (GAATG)n Satellite Satellite 1 449 0 871 106 0 53 chr3 207743872 207744061 -10293097 + (GAATG)n Satellite Satellite 1 179 0 207 69 0 0 chr3 207744076 207744105 -10293053 + (GAATG)n Satellite Satellite 2 30 0 1050 119 0 0 chr3 207744116 207744470 -10292688 + (GAATG)n Satellite Satellite 1 354 0 422 174 0 35 chr3 207744481 207744625 -10292533 + (GAATG)n Satellite Satellite 2 140 0 793 149 0 27 chr3 207744641 207745012 -10292146 + (GAATG)n Satellite Satellite 1 361 0 972 126 0 0 chr3 207745023 207745197 -10291961 + (GAATG)n Satellite Satellite 4 177 0 879 131 0 0 chr3 207745208 207745420 -10291738 + (GAATG)n Satellite Satellite 1 212 0 847 111 0 53 chr3 207745460 207745650 -10291508 + (GAATG)n Satellite Satellite 1 180 0 1017 147 0 4 chr3 207745665 207746299 -10290859 + (GAATG)n Satellite Satellite 3 809 0 1011 127 0 19 chr3 207746351 207746720 -10290438 + (GAATG)n Satellite Satellite 1 538 0 905 120 0 27 chr3 207746746 207746930 -10290228 + (GAATG)n Satellite Satellite 2 180 0 1042 142 2 2 chr3 207746971 207747456 -10289702 + (GAATG)n Satellite Satellite 1 485 0 987 124 0 0 chr3 207747468 207747645 -10289513 + (GAATG)n Satellite Satellite 2 178 0 1023 123 0 19 chr3 207747686 207748055 -10289103 + (GAATG)n Satellite Satellite 1 538 0 930 128 0 0 chr3 207748077 207748299 -10288859 + (GAATG)n Satellite Satellite 1 222 0 948 147 0 8 chr3 207748316 207748861 -10288297 + (GAATG)n Satellite Satellite 1 719 0 942 127 0 0 chr3 207748887 207749460 -10287698 + (GAATG)n Satellite Satellite 1 573 0 1200 114 0 6 chr3 207749477 207750360 -10286798 + (GAATG)n Satellite Satellite 1 1056 0 1188 122 0 0 chr3 207750372 207750915 -10286243 + (GAATG)n Satellite Satellite 1 543 0 1014 115 0 0 chr3 207750937 207751111 -10286047 + (GAATG)n Satellite Satellite 2 175 0 970 134 3 7 chr3 207751152 207751566 -10285592 + (GAATG)n Satellite Satellite 2 590 0 831 147 0 0 chr3 207751582 207751759 -10285399 + (GAATG)n Satellite Satellite 4 180 0 1056 125 0 13 chr3 207751770 207752245 -10284913 + (GAATG)n Satellite Satellite 3 628 0 1044 94 0 0 chr3 207752262 207752421 -10284737 + (GAATG)n Satellite Satellite 2 160 0 1122 100 0 0 chr3 207752432 207752612 -10284546 + (GAATG)n Satellite Satellite 1 180 0 765 172 0 0 chr3 207752637 207752817 -10284341 + (GAATG)n Satellite Satellite 1 180 0 200 157 11 124 chr3 207752818 207752842 -10284316 - HSATII Satellite Satellite -57 113 88 924 114 0 5 chr3 207752842 207753042 -10284116 + (GAATG)n Satellite Satellite 1 198 0 200 157 11 124 chr3 207753042 207753053 -10284105 - HSATII Satellite Satellite -82 88 35 1047 137 0 2 chr3 207753053 207753411 -10283747 + (GAATG)n Satellite Satellite 1 536 0 876 155 0 0 chr3 207753431 207753715 -10283443 + (GAATG)n Satellite Satellite 1 284 0 930 138 0 0 chr3 207753726 207753900 -10283258 + (GAATG)n Satellite Satellite 4 177 0 860 171 0 9 chr3 207753911 207754438 -10282720 + (GAATG)n Satellite Satellite 1 522 0 948 149 0 1 chr3 207754456 207755072 -10282086 + (GAATG)n Satellite Satellite 1 795 0 1078 129 1 10 chr3 207755118 207755938 -10281220 + (GAATG)n Satellite Satellite 1 988 0 1062 112 0 0 chr3 207755938 207756116 -10281042 + (GAATG)n Satellite Satellite 3 180 0 1152 73 0 0 chr3 207756183 207756347 -10280811 + (GAATG)n Satellite Satellite 2 165 0 822 161 0 0 chr3 207756783 207756957 -10280201 + (GAATG)n Satellite Satellite 2 175 0 1035 150 0 0 chr3 207756973 207757398 -10279760 + (GAATG)n Satellite Satellite 1 425 0 1080 126 0 5 chr3 207757423 207757878 -10279280 + (GAATG)n Satellite Satellite 2 631 0 1164 110 0 0 chr3 207757899 207758263 -10278895 + (GAATG)n Satellite Satellite 1 364 0 936 108 0 0 chr3 207758276 207758433 -10278725 + (GAATG)n Satellite Satellite 2 158 0 918 144 0 0 chr3 207758454 207758634 -10278524 + (GAATG)n Satellite Satellite 1 180 0 855 156 0 0 chr3 207758679 207758858 -10278300 + (GAATG)n Satellite Satellite 2 180 0 1035 117 0 0 chr3 207758874 207759054 -10278104 + (GAATG)n Satellite Satellite 1 180 0 687 169 0 0 chr3 207759069 207759294 -10277864 + (GAATG)n Satellite Satellite 1 225 0 924 102 0 0 chr3 207759319 207759466 -10277692 + (GAATG)n Satellite Satellite 4 150 0 188 119 0 24 chr3 207759477 207759519 -10277639 + (GAATG)n Satellite Satellite 2 42 0 1015 116 4 4 chr3 207759530 207759764 -10277394 + (GAATG)n Satellite Satellite 1 234 0 939 134 0 0 chr3 207759776 207759955 -10277203 + (GAATG)n Satellite Satellite 1 179 0 1203 102 0 0 chr3 207759970 207760357 -10276801 + (GAATG)n Satellite Satellite 1 387 0 948 154 0 2 chr3 207760368 207760714 -10276444 + (GAATG)n Satellite Satellite 1 525 0 768 154 3 19 chr3 207760725 207761096 -10276062 + (GAATG)n Satellite Satellite 1 365 0 1137 131 2 2 chr3 207761121 207761465 -10275693 + (GAATG)n Satellite Satellite 1 525 0 900 130 0 0 chr3 207761478 207761639 -10275519 + (GAATG)n Satellite Satellite 2 162 0 1106 128 3 6 chr3 207761681 207762429 -10274729 + (GAATG)n Satellite Satellite 1 745 0 914 158 3 0 chr3 207762649 207763011 -10274147 + (GAATG)n Satellite Satellite 1 363 0 1188 124 0 2 chr3 207763033 207763733 -10273425 + (GAATG)n Satellite Satellite 2 876 0 1053 86 0 0 chr3 207763764 207763927 -10273231 + (GAATG)n Satellite Satellite 2 164 0 894 143 0 0 chr3 207763962 207764137 -10273021 + (GAATG)n Satellite Satellite 2 176 0 966 130 0 0 chr3 207764188 207764365 -10272793 + (GAATG)n Satellite Satellite 4 180 0 689 158 0 27 chr3 207764378 207764561 -10272597 + (GAATG)n Satellite Satellite 3 180 0 1059 141 0 0 chr3 207764583 207765127 -10272031 + (GAATG)n Satellite Satellite 1 544 0 930 135 0 0 chr3 207765180 207765358 -10271800 + (GAATG)n Satellite Satellite 1 178 0 939 152 0 3 chr3 207765373 207765783 -10271375 + (GAATG)n Satellite Satellite 1 587 0 1188 131 0 1 chr3 207765794 207766509 -10270649 + (GAATG)n Satellite Satellite 1 893 0 933 162 0 0 chr3 207766522 207766874 -10270284 + (GAATG)n Satellite Satellite 1 352 0 756 173 0 0 chr3 207766904 207767083 -10270075 + (GAATG)n Satellite Satellite 2 180 0 1121 90 6 0 chr3 207767101 207767278 -10269880 + (GAATG)n Satellite Satellite 1 178 0 1035 120 0 0 chr3 207767289 207767658 -10269500 + (GAATG)n Satellite Satellite 1 369 0 993 157 0 12 chr3 207767674 207768106 -10269052 + (GAATG)n Satellite Satellite 1 427 0 900 146 0 0 chr3 207768118 207768296 -10268862 + (GAATG)n Satellite Satellite 3 180 0 267 54 0 0 chr3 207768314 207768351 -10268807 + (GAATG)n Satellite Satellite 3 39 0 1047 117 0 0 chr3 207768373 207768553 -10268605 + (GAATG)n Satellite Satellite 1 180 0 630 193 0 0 chr3 207768566 207768742 -10268416 + (GAATG)n Satellite Satellite 2 177 0 1041 118 0 0 chr3 207768765 207768943 -10268215 + (GAATG)n Satellite Satellite 1 178 0 1029 141 0 6 chr3 207768956 207769938 -10267220 + (GAATG)n Satellite Satellite 1 1149 0 1125 130 3 6 chr3 207769954 207770549 -10266609 + (GAATG)n Satellite Satellite 3 770 0 1044 114 0 0 chr3 207770562 207770738 -10266420 + (GAATG)n Satellite Satellite 2 177 0 441 176 0 0 chr3 207770753 207770861 -10266297 + (GAATG)n Satellite Satellite 4 111 0 735 178 0 0 chr3 207770872 207771046 -10266112 + (GAATG)n Satellite Satellite 4 177 0 923 122 5 0 chr3 207771057 207771268 -10265890 + (GAATG)n Satellite Satellite 1 212 0 1161 122 0 6 chr3 207771284 207771933 -10265225 + (GAATG)n Satellite Satellite 2 810 0 1038 126 0 0 chr3 207771962 207772316 -10264842 + (GAATG)n Satellite Satellite 1 354 0 1102 126 1 3 chr3 207772328 207773031 -10264127 + (GAATG)n Satellite Satellite 2 880 0 758 168 0 14 chr3 207773049 207773406 -10263752 + (GAATG)n Satellite Satellite 1 351 0 814 142 6 6 chr3 207773418 207773594 -10263564 + (GAATG)n Satellite Satellite 4 179 0 756 158 0 0 chr3 207773605 207773776 -10263382 + (GAATG)n Satellite Satellite 2 172 0 930 147 4 0 chr3 207773790 207774035 -10263123 + (GAATG)n Satellite Satellite 1 246 0 1071 117 0 0 chr3 207774071 207774251 -10262907 + (GAATG)n Satellite Satellite 1 180 0 624 138 0 0 chr3 207774280 207774410 -10262748 + (GAATG)n Satellite Satellite 1 130 0 948 132 9 9 chr3 207774544 207774899 -10262259 + (GAATG)n Satellite Satellite 1 355 0 1050 108 0 0 chr3 207774929 207775140 -10262018 + (GAATG)n Satellite Satellite 1 211 0 899 169 0 13 chr3 207775168 207775597 -10261561 + (GAATG)n Satellite Satellite 1 423 0 1206 113 0 14 chr3 207775608 207775887 -10261271 + (GAATG)n Satellite Satellite 1 681 0 1206 81 0 0 chr3 207775887 207776299 -10260859 + (GAATG)n Satellite Satellite 1 412 0 1026 115 0 0 chr3 207776377 207776551 -10260607 + (GAATG)n Satellite Satellite 2 175 0 733 142 0 53 chr3 207776562 207776752 -10260406 + (GAATG)n Satellite Satellite 1 180 0 948 125 3 3 chr3 207776771 207777171 -10259987 + (GAATG)n Satellite Satellite 1 400 0 1002 117 0 0 chr3 207777187 207777366 -10259792 + (GAATG)n Satellite Satellite 2 180 0 960 151 0 0 chr3 207777377 207778074 -10259084 + (GAATG)n Satellite Satellite 1 697 0 927 145 0 17 chr3 207778086 207778347 -10258811 + (GAATG)n Satellite Satellite 1 432 0 927 134 0 0 chr3 207778347 207778526 -10258632 + (GAATG)n Satellite Satellite 1 179 0 1152 109 0 11 chr3 207778661 207779175 -10257983 + (GAATG)n Satellite Satellite 2 674 0 1035 148 0 0 chr3 207779202 207779566 -10257592 + (GAATG)n Satellite Satellite 1 364 0 1110 115 0 2 chr3 207779581 207779984 -10257174 + (GAATG)n Satellite Satellite 1 581 0 743 157 0 27 chr3 207780011 207780196 -10256962 + (GAATG)n Satellite Satellite 1 180 0 750 165 0 0 chr3 207780212 207780382 -10256776 + (GAATG)n Satellite Satellite 5 174 0 816 149 0 0 chr3 207780416 207780590 -10256568 + (GAATG)n Satellite Satellite 2 175 0 1116 96 0 0 chr3 207780607 207780784 -10256374 + (GAATG)n Satellite Satellite 3 179 0 756 145 0 0 chr3 207780950 207781159 -10255999 + (GAATG)n Satellite Satellite 1 209 0 1068 111 0 0 chr3 207781170 207781350 -10255808 + (GAATG)n Satellite Satellite 1 180 0 1185 89 2 22 chr3 207781380 207781833 -10255325 + (GAATG)n Satellite Satellite 1 443 0 243 119 0 0 chr3 207781859 207781901 -10255257 + TAR1 Satellite telomeric 2070 2111 0 1071 130 0 16 chr3 207781913 207783005 -10254153 + (CATTC)n Satellite Satellite 1 1074 0 1185 133 0 6 chr3 207783024 207783555 -10253603 + (CATTC)n Satellite Satellite 2 351 0 1047 129 0 0 chr3 207783569 207783923 -10253235 + (CATTC)n Satellite Satellite 1 354 0 1080 144 2 2 chr3 207783940 207784631 -10252527 + (CATTC)n Satellite Satellite 1 691 0 1068 117 0 0 chr3 207784655 207785010 -10252148 + (CATTC)n Satellite Satellite 1 355 0 867 120 0 0 chr3 207785026 207785184 -10251974 + (CATTC)n Satellite Satellite 2 159 0 1059 122 0 22 chr3 207785196 207785556 -10251602 + (CATTC)n Satellite Satellite 2 353 0 1260 127 2 6 chr3 207785581 207786523 -10250635 + (CATTC)n Satellite Satellite 1 937 0 951 145 0 25 chr3 207786534 207787021 -10250137 + (CATTC)n Satellite Satellite 2 301 0 1005 123 0 0 chr3 207787038 207787217 -10249941 + (CATTC)n Satellite Satellite 2 180 0 1353 113 3 8 chr3 207787238 207788450 -10248708 + (CATTC)n Satellite Satellite 1 1205 0 1287 105 0 9 chr3 207788476 207789050 -10248108 + (CATTC)n Satellite Satellite 1 569 0 228 67 0 0 chr3 207789063 207789093 -10248065 + (CATTC)n Satellite Satellite 1 30 0 919 142 3 24 chr3 207789120 207789483 -10247675 + (CATTC)n Satellite Satellite 3 356 0 1028 118 3 16 chr3 207789499 207789862 -10247296 + (CATTC)n Satellite Satellite 2 359 0 1056 111 0 0 chr3 207789901 207790081 -10247077 + (CATTC)n Satellite Satellite 1 180 0 998 141 5 7 chr3 207790187 207795753 -10241405 - BSR/Beta Satellite Satellite 0 5557 1 * 2177 196 12 8 chr3 207795748 207796244 -10240914 + LSAU Satellite Satellite 1 498 0 341 212 13 93 chr3 207797689 207797840 -10239318 + LSAU Satellite Satellite 1 139 -359 202 156 44 0 chr3 207797959 207798004 -10239154 + (TGG)n Simple_repeat Simple_repeat 2 48 0 1006 131 5 10 chr3 207798501 207805943 -10231215 - BSR/Beta Satellite Satellite 0 7399 1 273 184 0 126 chr3 207806125 207806228 -10230930 + LSAU Satellite Satellite 1 90 -408 934 73 7 7 chr3 207806260 207806410 -10230748 + (GAATG)n Satellite Satellite 3 152 0 1146 95 0 0 chr3 207806428 207806607 -10230551 + (GAATG)n Satellite Satellite 1 179 0 1128 98 3 3 chr3 207806635 207806997 -10230161 + (GAATG)n Satellite Satellite 1 362 0 995 118 0 3 chr3 207807027 207807382 -10229776 + (GAATG)n Satellite Satellite 1 353 0 312 111 0 0 chr3 207807394 207807448 -10229710 + (TAATG)n Simple_repeat Simple_repeat 1 54 0 1050 131 0 13 chr3 207807463 207807737 -10229421 + (GAATG)n Satellite Satellite 1 448 0 945 128 0 0 chr3 207807748 207807928 -10229230 + (GAATG)n Satellite Satellite 1 180 0 972 133 0 0 chr3 207807953 207808133 -10229025 + (GAATG)n Satellite Satellite 1 180 0 297 162 0 0 chr3 207808154 207808222 -10228936 + (GAATG)n Satellite Satellite 2 69 0 653 155 11 11 chr3 207808246 207808420 -10228738 + (GAATG)n Satellite Satellite 4 177 0 966 142 4 2 chr3 207808436 207808970 -10228188 + (GAATG)n Satellite Satellite 1 535 0 814 126 6 28 chr3 207808982 207809164 -10227994 + (GAATG)n Satellite Satellite 2 179 0 231 213 0 0 chr3 207809175 207809250 -10227908 + (GAATG)n Satellite Satellite 1 75 0 936 133 0 0 chr3 207809270 207809450 -10227708 + (GAATG)n Satellite Satellite 1 180 0 396 71 0 0 chr3 207809461 207809517 -10227641 + (GAATG)n Satellite Satellite 4 59 0 858 129 0 0 chr3 207809629 207809792 -10227366 + (CATTC)n Satellite Satellite 2 164 0 960 175 0 0 chr3 207809809 207810328 -10226830 + (CATTC)n Satellite Satellite 1 519 0 1061 146 3 0 chr3 207810354 207810753 -10226405 + (CATTC)n Satellite Satellite 1 400 0 249 98 0 0 chr3 207810779 207810820 -10226338 + (CATTC)n Satellite Satellite 2 42 0 996 128 0 0 chr3 207810833 207811012 -10226146 + (CATTC)n Satellite Satellite 1 179 0 1221 98 0 41 chr3 207811028 207811403 -10225755 + (CATTC)n Satellite Satellite 1 360 0 978 120 0 13 chr3 207811421 207811813 -10225345 + (CATTC)n Satellite Satellite 1 387 0 972 144 0 24 chr3 207811828 207812373 -10224785 + (CATTC)n Satellite Satellite 1 358 0 861 150 0 0 chr3 207812388 207812568 -10224590 + (CATTC)n Satellite Satellite 1 180 0 963 153 0 0 chr3 207812589 207812921 -10224237 + (CATTC)n Satellite Satellite 1 332 0 1047 130 0 19 chr3 207812932 207813531 -10223627 + (CATTC)n Satellite Satellite 1 587 0 1257 105 0 0 chr3 207813553 207813792 -10223366 + (CATTC)n Satellite Satellite 1 239 0 276 127 0 0 chr3 207813807 207813862 -10223296 + (CATTC)n Satellite Satellite 2 56 0 969 128 0 0 chr3 207813886 207814066 -10223092 + (CATTC)n Satellite Satellite 1 180 0 802 135 0 27 chr3 207814106 207814291 -10222867 + (CATTC)n Satellite Satellite 1 180 0 264 30 0 0 chr3 207814302 207814335 -10222823 + (CATTC)n Satellite Satellite 2 34 0 1011 107 0 0 chr3 207814347 207814516 -10222642 + (CATTC)n Satellite Satellite 2 170 0 912 126 0 0 chr3 207814547 207814721 -10222437 + (CATTC)n Satellite Satellite 2 175 0 772 119 7 7 chr3 207814737 207814888 -10222270 + (CATTC)n Satellite Satellite 2 152 0 1056 111 0 0 chr3 207814901 207815081 -10222077 + (CATTC)n Satellite Satellite 1 180 0 912 140 0 0 chr3 207815097 207815368 -10221790 + (CATTC)n Satellite Satellite 1 271 0 1128 127 0 5 chr3 207815382 207815921 -10221237 + (CATTC)n Satellite Satellite 2 359 0 1005 147 0 0 chr3 207815961 207816241 -10220917 + (CATTC)n Satellite Satellite 1 280 0 852 153 0 17 chr3 207816267 207816556 -10220602 + (CATTC)n Satellite Satellite 1 284 0 900 147 0 0 chr3 207816577 207816800 -10220358 + (CATTC)n Satellite Satellite 1 223 0 857 124 0 27 chr3 207816820 207817005 -10220153 + (CATTC)n Satellite Satellite 1 180 0 501 110 0 0 chr3 207817018 207817100 -10220058 + (CATTC)n Satellite Satellite 4 85 0 876 146 0 0 chr3 207817111 207817289 -10219869 + (CATTC)n Satellite Satellite 2 179 0 999 143 0 3 chr3 207817301 207817622 -10219536 + (CATTC)n Satellite Satellite 2 321 0 975 124 0 0 chr3 207817635 207817812 -10219346 + (CATTC)n Satellite Satellite 1 177 0 1038 107 0 0 chr3 207817842 207818019 -10219139 + (CATTC)n Satellite Satellite 3 179 0 384 71 0 0 chr3 207818031 207818087 -10219071 + (CATTC)n Satellite Satellite 2 57 0 908 129 6 0 chr3 207818098 207818268 -10218890 + (CATTC)n Satellite Satellite 4 174 0 714 158 0 0 chr3 207818280 207818444 -10218714 + (CATTC)n Satellite Satellite 2 165 0 291 136 0 0 chr3 207818465 207818524 -10218634 + (CATTC)n Satellite Satellite 2 60 0 927 166 0 3 chr3 207818551 207818899 -10218259 + (CATTC)n Satellite Satellite 3 348 0 1035 133 0 4 chr3 207818910 207819141 -10218017 + (CATTC)n Satellite Satellite 2 231 0 930 144 0 0 chr3 207819154 207819334 -10217824 + (CATTC)n Satellite Satellite 1 180 0 561 170 0 0 chr3 207819345 207819486 -10217672 + (CATTC)n Satellite Satellite 2 142 0 801 158 0 0 chr3 207819497 207819674 -10217484 + (CATTC)n Satellite Satellite 4 180 0 1005 128 0 0 chr3 207819699 207819879 -10217279 + (CATTC)n Satellite Satellite 1 180 0 752 151 0 27 chr3 207819894 207820079 -10217079 + (CATTC)n Satellite Satellite 1 180 0 1044 155 0 3 chr3 207820091 207821154 -10216004 + (CATTC)n Satellite Satellite 1 1059 0 711 179 0 0 chr3 207821180 207821359 -10215799 + (CATTC)n Satellite Satellite 2 180 0 809 158 4 0 chr3 207821370 207821648 -10215510 + (CATTC)n Satellite Satellite 1 279 0 904 105 0 53 chr3 207821678 207821868 -10215290 + (CATTC)n Satellite Satellite 1 180 0 999 139 0 16 chr3 207821879 207822243 -10214915 + (CATTC)n Satellite Satellite 2 359 0 1042 123 3 20 chr3 207822254 207822593 -10214565 + (CATTC)n Satellite Satellite 2 334 0 1070 95 6 0 chr3 207822608 207822787 -10214371 + (CATTC)n Satellite Satellite 1 180 0 966 118 0 0 chr3 207822803 207822973 -10214185 + (CATTC)n Satellite Satellite 2 171 0 1056 127 0 27 chr3 207822998 207823534 -10213624 + (CATTC)n Satellite Satellite 2 350 0 996 124 0 0 chr3 207823564 207823742 -10213416 + (CATTC)n Satellite Satellite 3 180 0 753 168 0 0 chr3 207823753 207823932 -10213226 + (CATTC)n Satellite Satellite 2 180 0 1077 142 0 0 chr3 207823947 207824427 -10212731 + (CATTC)n Satellite Satellite 1 480 0 705 164 0 0 chr3 207824448 207824607 -10212551 + (CATTC)n Satellite Satellite 2 160 0 948 121 0 0 chr3 207824618 207824791 -10212367 + (CATTC)n Satellite Satellite 2 174 0 764 127 0 53 chr3 207824803 207824992 -10212166 + (CATTC)n Satellite Satellite 2 180 0 1143 111 0 9 chr3 207825006 207825551 -10211607 + (CATTC)n Satellite Satellite 1 539 0 888 172 0 0 chr3 207825562 207825893 -10211265 + (CATTC)n Satellite Satellite 1 331 0 1618 127 0 27 chr3 208025921 208026181 -10010977 + AluSx SINE Alu 53 305 -7 209 246 0 18 chr3 208026187 208026244 -10010914 + (TA)n Simple_repeat Simple_repeat 1 56 0 454 296 83 89 chr3 208026900 208027428 -10009730 + HAL1 LINE L1 818 1342 -1165 1718 35 0 0 chr3 208027433 208027636 -10009522 + L1PA5 LINE L1 5939 6141 -13 1517 185 6 78 chr3 208027679 208028014 -10009144 + AluJb SINE Alu 1 311 -1 24 67 0 0 chr3 208028335 208028380 -10008778 + AT_rich Low_complexity Low_complexity 1 45 0 2088 105 6 32 chr3 208028481 208028794 -10008364 + AluSq SINE Alu 1 305 -8 270 0 0 0 chr3 208028963 208028993 -10008165 + (TG)n Simple_repeat Simple_repeat 1 30 0 25 0 0 0 chr3 208029590 208029615 -10007543 + AT_rich Low_complexity Low_complexity 1 25 0 2115 112 3 3 chr3 208029663 208029958 -10007200 + AluSg SINE Alu 1 295 -15 25 51 0 0 chr3 208030360 208030399 -10006759 + AT_rich Low_complexity Low_complexity 1 39 0 1319 189 68 12 chr3 208030561 208030809 -10006349 + Tigger7 DNA MER2_type 1 262 -471 553 213 0 28 chr3 208030808 208030916 -10006242 + Tigger7 DNA MER2_type 2387 2491 0 * 30 0 0 0 chr3 208031339 208031369 -10005789 + AT_rich Low_complexity Low_complexity 1 30 0 221 309 43 32 chr3 208031722 208031816 -10005342 + MIR SINE MIR 24 118 -90 431 265 35 50 chr3 208031888 208032088 -10005070 + MIR3 SINE MIR 12 208 0 1517 87 53 10 chr3 208032369 208032577 -10004581 - AluSq SINE Alu -96 217 1 192 250 83 0 chr3 208033466 208033526 -10003632 + L2 LINE L2 2995 3059 -254 21 0 0 0 chr3 208033633 208033654 -10003504 + AT_rich Low_complexity Low_complexity 1 21 0 2227 104 0 0 chr3 208033654 208033942 -10003216 - AluSx SINE Alu -24 288 1 518 295 58 0 chr3 208034496 208034669 -10002489 + MIR3 SINE MIR 16 198 -10 231 260 55 14 chr3 208035183 208035256 -10001902 - MIR SINE MIR -69 193 118 1276 192 10 17 chr3 208037882 208038174 -9998984 + L1MC4 LINE L1 6788 7077 -965 410 278 164 6 chr3 208038774 208038940 -9998218 - MIR SINE MIR -32 230 36 355 215 97 11 chr3 208040613 208040706 -9996452 + MIR SINE MIR 45 145 -63 185 273 23 0 chr3 208040852 208040896 -9996262 + MER5A DNA MER1_type 72 116 -73 691 380 10 24 chr3 208041178 208041475 -9995683 - MER115 DNA AcHobo -244 449 157 359 203 203 57 chr3 208041486 208041609 -9995549 - MER5A DNA MER1_type -11 178 38 310 323 23 23 chr3 208041639 208041769 -9995389 - MER115 DNA AcHobo -532 161 32 2008 163 0 0 chr3 208041848 208042155 -9995003 + AluSq SINE Alu 1 307 -6 249 262 29 58 chr3 208042399 208042502 -9994656 - L3 LINE CR1 -377 1200 1101 231 359 29 10 chr3 208042502 208042605 -9994553 - L3 LINE CR1 -454 1123 1019 181 370 9 56 chr3 208042724 208042832 -9994326 - L3 LINE CR1 -599 978 876 180 0 0 0 chr3 208043196 208043216 -9993942 + (T)n Simple_repeat Simple_repeat 1 20 0 243 0 0 0 chr3 208043606 208043633 -9993525 + (T)n Simple_repeat Simple_repeat 1 27 0 329 330 126 69 chr3 208043762 208044110 -9993048 - L2 LINE L2 -2 3270 2903 921 59 0 0 chr3 208044156 208044274 -9992884 + L1PA5 LINE L1 6034 6151 -3 225 0 0 0 chr3 208044301 208044326 -9992832 + (TG)n Simple_repeat Simple_repeat 2 26 0 476 278 108 17 chr3 208046536 208046712 -9990446 - MIR SINE MIR -5 257 66 232 178 10 109 chr3 208046803 208046904 -9990254 - L1ME4a LINE L1 -46 6075 5985 215 283 35 55 chr3 208047246 208047391 -9989767 + MIR SINE MIR 71 212 -50 370 243 50 43 chr3 208047616 208047756 -9989402 - MIR SINE MIR 0 262 122 207 328 176 16 chr3 208047793 208047918 -9989240 - MIR SINE MIR -65 197 53 2368 73 3 0 chr3 208047929 208048230 -9988928 + AluY SINE Alu 1 302 -9 604 336 22 18 chr3 208049291 208049520 -9987638 - MIR SINE MIR -21 241 12 284 368 68 46 chr3 208049530 208049853 -9987305 - L2 LINE L2 -680 2634 2305 213 195 0 0 chr3 208050845 208050886 -9986272 + (CA)n Simple_repeat Simple_repeat 2 42 0 241 132 57 0 chr3 208050888 208050941 -9986217 + CT-rich Low_complexity Low_complexity 1 56 0 61 15 0 0 chr3 208050957 208051025 -9986133 + AT_rich Low_complexity Low_complexity 1 68 0 2614 61 0 0 chr3 208051286 208051597 -9985561 + AluY SINE Alu 1 311 0 555 257 82 0 chr3 208052507 208052678 -9984480 - L2 LINE L2 -9 3304 3120 619 116 0 0 chr3 208052779 208052865 -9984293 - AluS SINE Alu -219 94 9 1041 187 29 37 chr3 208052867 208053113 -9984045 + L1MB8 LINE L1 5910 6153 -25 1013 197 6 0 chr3 208053127 208053305 -9983853 + AluJb SINE Alu 134 312 0 409 263 32 21 chr3 208053330 208053520 -9983638 + L1MEc LINE L1 2154 2345 -4051 458 251 80 51 chr3 208053904 208054079 -9983079 + MLT1L LTR MaLR 366 545 -70 507 345 51 15 chr3 208054246 208054657 -9982501 + L1ME3A LINE L1 5521 5946 -224 257 228 141 0 chr3 208054694 208054786 -9982372 + MLT1J LTR MaLR 11 115 -396 1051 184 130 6 chr3 208054795 208055126 -9982032 - Charlie1 DNA MER1_type -51 2710 2339 318 212 12 47 chr3 208055218 208055303 -9981855 + MLT1J LTR MaLR 387 468 -43 1310 238 25 20 chr3 208055440 208055793 -9981365 + MLT1A1 LTR MaLR 11 365 0 29 70 0 0 chr3 208056244 208056301 -9980857 + AT_rich Low_complexity Low_complexity 1 57 0 258 286 36 57 chr3 208056336 208056476 -9980682 - MIR SINE MIR -50 212 76 369 0 0 0 chr3 208057051 208057092 -9980066 + (CA)n Simple_repeat Simple_repeat 2 42 0 2402 73 7 0 chr3 208057138 208057438 -9979720 + AluSg SINE Alu 1 302 -8 251 376 46 0 chr3 208057470 208057579 -9979579 + L2 LINE L2 3178 3291 -22 749 100 107 0 chr3 208058807 208058947 -9978211 - L1M LINE L1 -880 5411 5257 21 0 0 0 chr3 208058992 208059013 -9978145 + AT_rich Low_complexity Low_complexity 1 21 0 1218 251 99 0 chr3 208059294 208059768 -9977390 + MER114 LTR ERV 53 573 -75 1297 173 135 3 chr3 208059806 208060095 -9977063 - L1MA8 LINE L1 -11 7699 7373 4341 185 62 6 chr3 208060105 208061132 -9976026 - L1MA8 LINE L1 -743 6822 5785 3307 250 35 34 chr3 208061133 208062367 -9974791 - L1MA8 LINE L1 -4320 3245 2011 2157 233 73 48 chr3 208062382 208063091 -9974067 - L1MA8 LINE L1 -6297 1192 466 257 286 152 0 chr3 208064706 208064811 -9972347 - MIR SINE MIR -54 208 88 257 326 47 0 chr3 208064846 208064932 -9972226 + MIR SINE MIR 46 135 -127 236 347 132 25 chr3 208065484 208065605 -9971553 - L2 LINE L2 -17 3255 3122 193 346 126 16 chr3 208066414 208066541 -9970617 + MIR3 SINE MIR 20 160 -48 270 127 42 0 chr3 208069637 208069708 -9967450 + (TA)n Simple_repeat Simple_repeat 2 75 0 2112 102 0 34 chr3 208071212 208071506 -9965652 + AluSg SINE Alu 1 284 -26 468 51 0 0 chr3 208071506 208071565 -9965593 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 27 87 0 0 chr3 208072168 208072237 -9964921 + AT_rich Low_complexity Low_complexity 1 69 0 395 286 69 42 chr3 208072438 208072627 -9964531 - MIR SINE MIR -10 252 59 240 295 64 20 chr3 208073205 208073330 -9963828 - MIR SINE MIR -77 131 25 1407 187 60 4 chr3 208073517 208073629 -9963529 + AluJo SINE Alu 5 109 -203 281 64 43 0 chr3 208073629 208073676 -9963482 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 1407 187 60 4 chr3 208073676 208073831 -9963327 + AluJo SINE Alu 109 287 -25 39 38 0 0 chr3 208073832 208073885 -9963273 + AT_rich Low_complexity Low_complexity 1 53 0 312 27 0 0 chr3 208073969 208074006 -9963152 + (TTTTA)n Simple_repeat Simple_repeat 2 38 0 480 277 73 15 chr3 208074294 208074431 -9962727 + MIR3 SINE MIR 19 163 -45 239 404 60 0 chr3 208074443 208074594 -9962564 - L2 LINE L2 -6 3266 3107 225 0 0 0 chr3 208074665 208074690 -9962468 + (CA)n Simple_repeat Simple_repeat 1 25 0 2103 85 0 85 chr3 208075296 208075614 -9961544 + AluSg1 SINE Alu 3 293 -16 280 291 47 0 chr3 208075705 208075791 -9961367 - MIR3 SINE MIR -4 204 115 1263 254 51 25 chr3 208076250 208076698 -9960460 + LTR40b LTR ERVL 1 460 -2 225 266 32 75 chr3 208076751 208076845 -9960313 + MLT1L LTR MaLR 165 254 -361 225 322 0 0 chr3 208077130 208077217 -9959941 + L2 LINE L2 1787 1873 -1441 1575 253 33 35 chr3 208077481 208078147 -9959011 - L1ME2 LINE L1 -181 6377 5714 7577 23 0 1 chr3 208078178 208079682 -9957476 - L1PA4 LINE L1 -3 6152 4648 4489 48 0 0 chr3 208079682 208080249 -9956909 + L1P LINE L1 1983 2549 -3597 337 262 86 68 chr3 208080256 208080580 -9956578 - L1ME2 LINE L1 -860 5680 5351 759 140 53 47 chr3 208080654 208080804 -9956354 - FAM SINE Alu -6 43 1 1139 112 6 28 chr3 208081195 208081373 -9955785 + L1PA8A LINE L1 5950 6123 -8 417 70 0 0 chr3 208081375 208081432 -9955726 + (GGAA)n Simple_repeat Simple_repeat 3 59 0 246 128 0 0 chr3 208081496 208081535 -9955623 + (A)n Simple_repeat Simple_repeat 1 39 0 371 68 220 0 chr3 208081648 208081707 -9955451 - AluSp SINE Alu -8 295 224 1304 81 6 0 chr3 208081712 208081884 -9955274 - AluSp SINE Alu -140 173 1 616 292 87 15 chr3 208081905 208082367 -9954791 - L1ME2 LINE L1 -1338 5202 4708 485 263 8 23 chr3 208082436 208082569 -9954589 + MLT1J2 LTR MaLR 45 175 -275 895 249 79 59 chr3 208082835 208083635 -9953523 - L1ME2 LINE L1 -3111 3429 2614 549 40 6 96 chr3 208083643 208083820 -9953338 + (TA)n Simple_repeat Simple_repeat 2 162 0 305 256 6 38 chr3 208083841 208084001 -9953157 + (TA)n Simple_repeat Simple_repeat 1 155 0 320 262 102 12 chr3 208084001 208084213 -9952945 - L1ME2 LINE L1 -3907 2633 2397 21 0 0 0 chr3 208084390 208084411 -9952747 + AT_rich Low_complexity Low_complexity 1 21 0 332 355 101 18 chr3 208084451 208084679 -9952479 + ERVL LTR ERVL 3351 3597 -2167 2183 119 0 16 chr3 208085000 208085312 -9951846 + AluSx SINE Alu 5 311 -1 23 0 0 0 chr3 208086209 208086232 -9950926 + AT_rich Low_complexity Low_complexity 1 23 0 13033 209 22 10 chr3 208086232 208090368 -9946790 - L1PB3 LINE L1 -7 6850 2621 241 244 55 31 chr3 208090575 208090702 -9946456 - HAL1b LINE L1 -267 1081 952 4276 190 25 72 chr3 208090711 208091718 -9945440 + L1MC1 LINE L1 21 979 -5447 4280 132 39 21 chr3 208091718 208092417 -9944741 + MER50 LTR ERV1 1 711 -23 8155 224 65 39 chr3 208092420 208093227 -9943931 + L1MC1 LINE L1 978 1762 -4851 2392 64 0 13 chr3 208093227 208093552 -9943606 + AluY SINE Alu 1 311 0 8155 224 65 39 chr3 208093552 208093726 -9943432 + L1MC1 LINE L1 1762 1930 -4683 2520 110 30 3 chr3 208093726 208094091 -9943067 - THE1C LTR MaLR 0 375 1 8155 224 65 39 chr3 208094091 208095662 -9941496 + L1MC1 LINE L1 1930 3459 -3154 2146 76 0 14 chr3 208095662 208095938 -9941220 + AluY SINE Alu 1 272 -39 8155 224 65 39 chr3 208095938 208096704 -9940454 + L1MC1 LINE L1 3459 4204 -2409 1988 158 0 22 chr3 208096704 208097015 -9940143 - AluSx SINE Alu -8 304 1 8155 224 65 39 chr3 208097015 208098728 -9938430 + L1MC1 LINE L1 4204 6125 -488 2945 153 36 14 chr3 208098733 208099238 -9937920 + MER34 LTR ERV1 27 542 0 2468 164 61 0 chr3 208099238 208099700 -9937458 + L1MC1 LINE L1 6116 6605 -8 1136 245 68 83 chr3 208099702 208100219 -9936939 - HAL1b LINE L1 -389 959 451 2420 156 44 0 chr3 208100219 208100629 -9936529 - MSTA LTR MaLR 0 428 1 1136 245 68 83 chr3 208100629 208100727 -9936431 - HAL1b LINE L1 -897 451 353 287 267 183 21 chr3 208100999 208101190 -9935968 - L1ME LINE L1 -426 5744 5523 34 65 0 0 chr3 208101509 208101571 -9935587 + AT_rich Low_complexity Low_complexity 1 62 0 309 297 146 50 chr3 208101767 208102232 -9934926 - L1ME LINE L1 -3236 2910 2401 226 332 106 85 chr3 208103007 208103338 -9933820 - L2 LINE L2 -90 3182 2845 584 0 28 0 chr3 208103440 208103511 -9933647 + (TTTC)n Simple_repeat Simple_repeat 1 73 0 1984 130 7 3 chr3 208103511 208103976 -9933182 - AluSx SINE Alu 0 476 11 704 314 15 0 chr3 208103988 208104192 -9932966 - MIR SINE MIR -43 219 13 288 356 14 77 chr3 208105038 208105246 -9931912 + L2 LINE L2 2862 3056 -216 331 310 35 18 chr3 208105899 208106012 -9931146 - MIR SINE MIR -61 147 33 986 194 50 92 chr3 208106805 208107326 -9929832 - L1MC5 LINE L1 -37 7924 7426 546 276 71 108 chr3 208107425 208107859 -9929299 - MLT1J2 LTR MaLR -27 423 6 362 336 113 9 chr3 208108066 208108295 -9928863 + MIR SINE MIR 8 260 -2 230 354 0 0 chr3 208109793 208109875 -9927283 - MIR SINE MIR -60 148 67 2688 35 0 0 chr3 208110106 208110416 -9926742 + AluY SINE Alu 1 310 -1 194 273 0 0 chr3 208110550 208110594 -9926564 + MIR3 SINE MIR 133 176 -32 1434 223 74 72 chr3 208110886 208110927 -9926231 - MLT2B1 LTR ERVL 0 520 481 207 69 0 0 chr3 208110927 208110956 -9926202 + (TG)n Simple_repeat Simple_repeat 2 30 0 1434 223 74 72 chr3 208110956 208111403 -9925755 - MLT2B1 LTR ERVL -39 481 31 1453 128 161 77 chr3 208111404 208111757 -9925401 - Tigger2 DNA MER2_type -69 2649 2267 476 145 0 0 chr3 208111741 208111810 -9925348 - Tigger2 DNA MER2_type -2649 69 1 * 202 228 105 97 chr3 208111842 208111956 -9925202 + MIR SINE MIR 63 177 -85 380 336 27 9 chr3 208112963 208113073 -9924085 - MIR3 SINE MIR -94 114 3 811 217 11 60 chr3 208113829 208113963 -9923195 + MER5A DNA MER1_type 1 125 -64 2214 113 0 3 chr3 208113963 208114274 -9922884 - AluSq SINE Alu -3 310 1 811 217 11 60 chr3 208114274 208114323 -9922835 + MER5A DNA MER1_type 125 175 -14 271 279 132 22 chr3 208114806 208114942 -9922216 + MIR3 SINE MIR 27 177 -31 269 326 56 49 chr3 208115526 208115670 -9921488 - MIR3 SINE MIR -48 160 16 399 317 78 49 chr3 208115990 208116233 -9920925 - MIR SINE MIR -10 252 3 278 299 21 49 chr3 208116302 208116446 -9920712 - MIR SINE MIR -67 195 56 1821 152 0 7 chr3 208117093 208117370 -9919788 - AluJb SINE Alu -14 298 24 486 0 0 0 chr3 208118496 208118550 -9918608 + (TA)n Simple_repeat Simple_repeat 2 55 0 277 218 73 0 chr3 208118729 208118784 -9918374 + MIR SINE MIR 93 151 -57 1640 159 59 0 chr3 208120383 208120653 -9916505 + AluJo SINE Alu 9 294 -18 222 422 37 0 chr3 208121164 208121325 -9915833 - L2 LINE L2 -219 3053 2887 740 290 78 22 chr3 208121454 208121685 -9915473 + MIR SINE MIR 16 259 -3 203 178 0 22 chr3 208121795 208121840 -9915318 + (TGAA)n Simple_repeat Simple_repeat 2 45 0 246 246 56 92 chr3 208122642 208122692 -9914466 - L1ME LINE L1 -463 5658 5608 2469 66 0 3 chr3 208122692 208122995 -9914163 + AluSc SINE Alu 1 302 -7 246 246 56 92 chr3 208122995 208123086 -9914072 - L1ME LINE L1 -513 5608 5522 1180 224 60 25 chr3 208123157 208123523 -9913635 + L1ME2 LINE L1 5721 6099 -65 278 322 87 9 chr3 208124101 208124216 -9912942 + L2 LINE L2 3178 3301 -12 2583 52 0 3 chr3 208124216 208124524 -9912634 + AluY SINE Alu 1 307 -4 546 320 88 13 chr3 208125482 208125710 -9911448 - L3 LINE CR1 -72 1505 1261 201 235 87 70 chr3 208125790 208125905 -9911253 - L3 LINE CR1 -442 1135 1019 1916 281 79 46 chr3 208126416 208127392 -9909766 + L2 LINE L2 2303 3308 -5 216 284 102 0 chr3 208127842 208127930 -9909228 - MIR SINE MIR 0 262 166 22 70 0 0 chr3 208128147 208128190 -9908968 + AT_rich Low_complexity Low_complexity 1 43 0 1125 212 71 11 chr3 208129048 208129331 -9907827 + MER58B DNA MER1_type 27 326 -15 358 299 102 0 chr3 208129358 208129495 -9907663 - MIR3 SINE MIR -56 152 2 29 0 0 0 chr3 208129882 208129911 -9907247 + AT_rich Low_complexity Low_complexity 1 29 0 271 0 25 25 chr3 208130393 208130433 -9906725 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 285 336 66 83 chr3 208130491 208131045 -9906113 - L2 LINE L2 0 3272 2708 484 278 102 28 chr3 208131145 208131361 -9905797 - MIR SINE MIR 0 262 31 228 311 136 0 chr3 208133025 208133128 -9904030 - MIR3 SINE MIR -7 201 85 231 254 246 16 chr3 208133580 208133706 -9903452 - MIR3 SINE MIR -52 156 2 350 234 214 14 chr3 208134320 208134465 -9902693 - MIR3 SINE MIR -31 177 4 821 260 16 16 chr3 208134783 208134975 -9902183 - MIR SINE MIR -57 205 14 504 225 18 0 chr3 208134980 208135091 -9902067 - MER81 DNA DNA 0 114 2 318 305 126 40 chr3 208135226 208135400 -9901758 - MIR SINE MIR -30 232 44 339 263 44 18 chr3 208137686 208137800 -9899358 - MIR3 SINE MIR -46 162 46 5605 129 19 40 chr3 208137915 208138976 -9898182 + L1MA5A LINE L1 5257 6294 -3 1437 264 52 34 chr3 208139008 208139507 -9897651 + MER69 DNA AcHobo 61 568 -658 1015 206 69 42 chr3 208139505 208139956 -9897202 + MER69 DNA AcHobo 2010 2472 -54 * 1672 164 4 11 chr3 208139986 208140261 -9896897 + AluJo SINE Alu 1 273 -39 225 0 0 0 chr3 208140322 208140347 -9896811 + (CA)n Simple_repeat Simple_repeat 2 26 0 241 253 91 71 chr3 208140853 208140952 -9896206 + MIR SINE MIR 156 256 -6 338 203 54 108 chr3 208141834 208141915 -9895243 - LTR45B LTR ERV1 0 489 418 2034 138 0 0 chr3 208141915 208142205 -9894953 - AluSg SINE Alu -20 290 1 338 203 54 108 chr3 208142205 208142271 -9894887 - LTR45B LTR ERV1 -71 418 350 374 269 103 37 chr3 208142488 208142730 -9894428 + HAL1 LINE L1 2250 2507 0 300 330 38 14 chr3 208143038 208143250 -9893908 + L2 LINE L2 2162 2378 -936 183 261 294 11 chr3 208143840 208143932 -9893226 - L2 LINE L2 -18 3254 3137 518 284 6 24 chr3 208144105 208144311 -9892847 + MIR SINE MIR 61 262 0 1904 116 34 0 chr3 208144720 208145033 -9892125 + AluSx SINE Alu 7 328 0 3252 86 2 9 chr3 208145645 208146097 -9891061 + L1PA8A LINE L1 5683 6131 0 3460 251 48 60 chr3 208146113 208146367 -9890791 - ERVL LTR ERVL -2154 3610 3355 1929 149 0 0 chr3 208146367 208146643 -9890515 - AluSx SINE Alu 0 312 37 3460 251 48 60 chr3 208146643 208147571 -9889587 - ERVL LTR ERVL -2409 3355 2442 380 323 106 12 chr3 208147571 208147893 -9889265 + ERVL LTR ERVL 889 1240 -4524 654 265 6 0 chr3 208148189 208148351 -9888807 - ERVL LTR ERVL -4050 1714 1552 204 400 6 39 chr3 208148406 208148586 -9888572 + L3 LINE CR1 218 391 -1186 813 367 66 45 chr3 208148625 208149263 -9887895 + L3 LINE CR1 920 1570 -7 198 374 19 65 chr3 208150460 208150615 -9886543 + MIR3 SINE MIR 20 167 -41 332 340 77 13 chr3 208150865 208151021 -9886137 + L3 LINE CR1 1376 1541 -36 354 279 0 54 chr3 208151400 208151511 -9885647 - MIR SINE MIR -71 191 87 574 305 46 71 chr3 208151643 208152037 -9885121 - L3 LINE CR1 -66 1511 1128 315 332 82 14 chr3 208153467 208153675 -9883483 - L2 LINE L2 -962 2352 2131 180 0 0 0 chr3 208153675 208153695 -9883463 + (A)n Simple_repeat Simple_repeat 1 20 0 1203 302 107 40 chr3 208154615 208155575 -9881583 - L2 LINE L2 -6 3307 2273 321 336 8 34 chr3 208155780 208155899 -9881259 - MIR SINE MIR -74 134 19 21 71 0 0 chr3 208155922 208155964 -9881194 + AT_rich Low_complexity Low_complexity 1 42 0 237 244 51 26 chr3 208156081 208156159 -9880999 + MER94 DNA DNA 10 89 -45 509 242 0 16 chr3 208156565 208156689 -9880469 - MER20 DNA MER1_type 0 219 98 274 161 11 126 chr3 208157085 208157172 -9879986 - MER20 DNA MER1_type -142 77 1 527 267 24 35 chr3 208157186 208157351 -9879807 + MIR SINE MIR 34 196 -63 338 358 101 48 chr3 208158810 208159126 -9878032 + L2 LINE L2 2932 3264 -8 400 364 91 29 chr3 208159804 208160222 -9876936 + L2 LINE L2 2177 2620 -694 249 336 66 15 chr3 208160363 208160500 -9876658 + L2 LINE L2 3165 3308 -5 21 0 0 0 chr3 208161705 208161726 -9875432 + AT_rich Low_complexity Low_complexity 1 21 0 1099 53 0 0 chr3 208161813 208162083 -9875075 + AluY SINE Alu 150 419 0 223 328 15 84 chr3 208163124 208163255 -9873903 - MIR SINE MIR -51 211 90 22 56 0 0 chr3 208163395 208163431 -9873727 + AT_rich Low_complexity Low_complexity 1 36 0 435 38 0 0 chr3 208163496 208163549 -9873609 + (TTTTA)n Simple_repeat Simple_repeat 3 55 0 348 292 0 9 chr3 208165069 208165182 -9871976 + A-rich Low_complexity Low_complexity 4 115 0 311 273 55 47 chr3 208165851 208165979 -9871179 + MIR3 SINE MIR 3 131 -77 437 319 63 11 chr3 208166346 208166537 -9870621 - MIR3 SINE MIR -3 205 5 2214 116 0 3 chr3 208166841 208167142 -9870016 + AluSx SINE Alu 1 300 -12 22 0 0 0 chr3 208167459 208167481 -9869677 + AT_rich Low_complexity Low_complexity 1 22 0 237 323 32 32 chr3 208167861 208167985 -9869173 - L3b LINE CR1 -349 1234 1111 272 225 67 45 chr3 208168370 208168459 -9868699 - MIR3 SINE MIR -6 202 112 313 344 51 13 chr3 208169837 208169994 -9867164 + MIR3 SINE MIR 42 204 -4 * 326 364 67 32 chr3 208169979 208170322 -9866836 + L3b LINE CR1 1165 1519 -64 247 182 0 36 chr3 208170456 208170511 -9866647 + L2 LINE L2 3261 3313 0 258 346 32 32 chr3 208170605 208170761 -9866397 + MIR3 SINE MIR 30 185 -23 185 316 18 0 chr3 208171876 208171933 -9865225 - L2 LINE L2 -1 3271 3214 215 309 132 15 chr3 208172666 208172802 -9864356 + MIR SINE MIR 95 246 -16 1936 110 0 8 chr3 208172838 208173102 -9864056 - AluY SINE Alu -3 308 47 5173 181 27 16 chr3 208173203 208175096 -9862062 - L1PBb LINE L1 -4289 1915 1 3558 315 17 19 chr3 208175064 208176702 -9860456 - L1PBa LINE L1 -5226 1637 3 * 248 0 0 30 chr3 208177311 208177344 -9859814 + (CA)n Simple_repeat Simple_repeat 2 33 0 243 314 116 0 chr3 208177980 208178066 -9859092 + MIR SINE MIR 53 148 -114 218 224 0 20 chr3 208178106 208178155 -9859003 + MER5B DNA MER1_type 2 49 -129 5266 149 5 0 chr3 208178173 208179344 -9857814 - L1PA16 LINE L1 -9 6157 4975 2767 203 3 15 chr3 208179356 208179968 -9857190 - L1 LINE L1 -1314 4832 4228 * 3764 221 3 22 chr3 208179960 208180356 -9856802 + L1P LINE L1 3362 3764 -2382 1887 122 0 51 chr3 208180356 208180651 -9856507 + AluSx SINE Alu 1 280 -32 354 45 0 0 chr3 208180653 208180697 -9856461 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 3764 221 3 22 chr3 208180697 208181163 -9855995 + L1P LINE L1 3765 4211 -1935 408 256 120 8 chr3 208181187 208181304 -9855854 - MER5B DNA MER1_type -48 130 1 200 283 0 0 chr3 208181970 208182016 -9855142 - MER5A DNA MER1_type -1 188 143 444 261 22 22 chr3 208182148 208182282 -9854876 - MER5A DNA MER1_type -51 138 5 21 0 0 0 chr3 208182814 208182835 -9854323 + AT_rich Low_complexity Low_complexity 1 21 0 31 68 0 0 chr3 208183197 208183256 -9853902 + AT_rich Low_complexity Low_complexity 1 59 0 6518 40 1 0 chr3 208183442 208184233 -9852925 - L1P3 LINE L1 -1704 4442 3651 * 7015 48 20 11 chr3 208184232 208185241 -9851917 + L1P3 LINE L1 4455 5485 -669 2317 100 0 6 chr3 208185241 208185552 -9851606 + AluSg SINE Alu 1 309 -1 7015 48 20 11 chr3 208185552 208185835 -9851323 + L1P3 LINE L1 5485 5764 -390 24 0 0 0 chr3 208186117 208186141 -9851017 + AT_rich Low_complexity Low_complexity 1 24 0 727 308 94 0 chr3 208186141 208186375 -9850783 - MIR SINE MIR -5 257 2 188 271 62 0 chr3 208186527 208186575 -9850583 - MIR SINE MIR -113 149 99 293 304 50 50 chr3 208187007 208187168 -9849990 + MIR3 SINE MIR 13 173 -35 192 219 0 0 chr3 208187246 208187287 -9849871 + MIR SINE MIR 114 154 -108 23 33 0 0 chr3 208187356 208187386 -9849772 + AT_rich Low_complexity Low_complexity 1 30 0 207 263 79 53 chr3 208188073 208188187 -9848971 + MIR SINE MIR 118 234 -28 2177 121 0 0 chr3 208188632 208188922 -9848236 - AluSg SINE Alu -20 290 1 446 277 176 33 chr3 208189388 208189781 -9847377 + L1ME3A LINE L1 5503 5951 -219 186 43 0 0 chr3 208190174 208190197 -9846961 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2249 92 0 0 chr3 208190422 208190705 -9846453 - AluSg SINE Alu -27 283 1 210 219 0 0 chr3 208190854 208190895 -9846263 + L2 LINE L2 3267 3307 -6 187 340 0 0 chr3 208191772 208191825 -9845333 + L2 LINE L2 3219 3271 -1 315 0 0 0 chr3 208192145 208192180 -9844978 + (TG)n Simple_repeat Simple_repeat 2 36 0 934 211 53 20 chr3 208192185 208192431 -9844727 - L1MD3 LINE L1 -9 7986 7733 1351 181 19 0 chr3 208192743 208193002 -9844156 + L1MA7 LINE L1 4847 5110 -1036 4118 176 98 10 chr3 208193008 208193884 -9843274 + L1MA7 LINE L1 5337 6289 -2 580 311 39 72 chr3 208194815 208195645 -9841513 + HAL1 LINE L1 992 1793 -714 795 43 29 36 chr3 208195723 208195862 -9841296 + (GAAA)n Simple_repeat Simple_repeat 3 140 0 421 163 10 10 chr3 208195862 208195960 -9841198 + GA-rich Low_complexity Low_complexity 3 100 0 752 56 0 19 chr3 208195964 208196071 -9841087 + (GGAA)n Simple_repeat Simple_repeat 4 108 0 21 0 0 0 chr3 208196167 208196188 -9840970 + AT_rich Low_complexity Low_complexity 1 21 0 22 103 0 0 chr3 208197063 208197141 -9840017 + AT_rich Low_complexity Low_complexity 1 78 0 530 188 51 74 chr3 208197568 208197744 -9839414 - L1MC5 LINE L1 -67 7894 7723 34 55 0 0 chr3 208197884 208197939 -9839219 + AT_rich Low_complexity Low_complexity 1 55 0 23 78 0 0 chr3 208198000 208198051 -9839107 + AT_rich Low_complexity Low_complexity 1 51 0 573 317 70 29 chr3 208198220 208199110 -9838048 - L1ME3A LINE L1 -247 5923 4999 21 0 0 0 chr3 208199110 208199131 -9838027 + AT_rich Low_complexity Low_complexity 1 21 0 186 358 165 0 chr3 208199515 208199624 -9837534 + L2 LINE L2 3129 3255 -17 376 257 20 144 chr3 208199653 208199753 -9837405 + MIR3 SINE MIR 32 96 -112 1457 185 7 52 chr3 208199753 208200061 -9837097 - AluJo SINE Alu -18 294 1 376 257 20 144 chr3 208200061 208200162 -9836996 + MIR3 SINE MIR 96 208 0 1007 211 20 5 chr3 208200662 208200866 -9836292 + MER6B DNA MER2_type 1 207 -3 195 42 0 0 chr3 208200959 208200983 -9836175 + (T)n Simple_repeat Simple_repeat 1 24 0 183 275 125 19 chr3 208201593 208201722 -9835436 - MIR SINE MIR -66 142 1 291 270 53 92 chr3 208201746 208201898 -9835260 - MARNA DNA Mariner -54 532 387 244 357 71 9 chr3 208201945 208202057 -9835101 + L2 LINE L2 3154 3272 0 209 306 60 37 chr3 208202178 208202312 -9834846 + L2 LINE L2 3136 3272 0 2079 140 19 40 chr3 208202856 208203228 -9833930 - THE1B LTR MaLR 0 364 1 195 328 47 16 chr3 208204621 208204685 -9832473 - MIR3 SINE MIR -40 168 103 236 282 103 40 chr3 208204832 208205006 -9832152 + MIR SINE MIR 63 247 -15 278 284 30 82 chr3 208205391 208205525 -9831633 - MIR3 SINE MIR -67 141 15 197 315 67 34 chr3 208206556 208206645 -9830513 + MIR SINE MIR 71 162 -100 437 273 107 0 chr3 208206661 208206811 -9830347 - L2 LINE L2 -776 2538 2373 308 262 66 25 chr3 208207364 208207486 -9829672 + HAL1 LINE L1 2247 2373 -134 483 247 53 41 chr3 208207562 208207732 -9829426 - LTR33 LTR ERVL -5 516 345 702 262 30 6 chr3 208207844 208208012 -9829146 - LTR33 LTR ERVL -349 172 1 23 54 0 0 chr3 208208191 208208228 -9828930 + AT_rich Low_complexity Low_complexity 1 37 0 299 162 114 48 chr3 208208346 208208451 -9828707 + HAL1b LINE L1 1232 1343 -5 207 0 0 0 chr3 208208917 208208940 -9828218 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 415 300 27 33 chr3 208209050 208209200 -9827958 - L2 LINE L2 -338 2975 2827 316 327 62 12 chr3 208209389 208209558 -9827600 + MIR SINE MIR 3 189 -73 277 274 148 7 chr3 208209608 208209743 -9827415 - MER103 DNA DNA -1 165 12 4014 30 4 2 chr3 208210026 208210527 -9826631 - L1P LINE L1 -749 5397 4896 4004 41 0 6 chr3 208210527 208211020 -9826138 + L1PA4 LINE L1 5666 6155 0 416 253 40 53 chr3 208211351 208211501 -9825657 + MIR SINE MIR 51 198 -64 228 226 32 0 chr3 208212612 208212705 -9824453 + GA-rich Low_complexity Low_complexity 1 96 0 1734 137 4 4 chr3 208213085 208213348 -9823810 + AluSx SINE Alu 46 308 -4 23 33 0 0 chr3 208213580 208213610 -9823548 + AT_rich Low_complexity Low_complexity 1 30 0 806 228 84 8 chr3 208213938 208214175 -9822983 + MIR SINE MIR 5 259 -3 280 252 138 71 chr3 208214176 208214386 -9822772 - MLT1L LTR MaLR -391 224 1 507 288 44 15 chr3 208214386 208214584 -9822574 - MIR SINE MIR -62 200 3 243 229 38 38 chr3 208214888 208214993 -9822165 + (TTCA)n Simple_repeat Simple_repeat 3 107 0 753 286 28 24 chr3 208215549 208215801 -9821357 - MIR SINE MIR -7 255 3 234 346 39 16 chr3 208215805 208215932 -9821226 - L3 LINE CR1 -817 760 631 1094 235 5 0 chr3 208215991 208216208 -9820950 + MER58A DNA MER1_type 5 222 -2 456 337 115 15 chr3 208217145 208217483 -9819675 + L3 LINE CR1 1193 1564 -13 214 346 121 17 chr3 208219456 208219687 -9817471 + L2 LINE L2 2723 2977 -337 402 21 0 0 chr3 208220238 208220285 -9816873 + (CA)n Simple_repeat Simple_repeat 1 47 0 23 33 0 0 chr3 208220332 208220362 -9816796 + AT_rich Low_complexity Low_complexity 1 30 0 283 288 0 15 chr3 208221651 208221717 -9815441 - MIR SINE MIR -107 101 37 426 352 41 18 chr3 208222043 208222262 -9814896 + L3 LINE CR1 1295 1518 -59 764 104 21 14 chr3 208222433 208222577 -9814581 + (GGAA)n Simple_repeat Simple_repeat 3 147 0 201 116 70 0 chr3 208222577 208222620 -9814538 + GA-rich Low_complexity Low_complexity 1 46 0 212 274 143 0 chr3 208222825 208222909 -9814249 - MIR SINE MIR -83 125 30 374 276 51 60 chr3 208223230 208223447 -9813711 - MIR SINE MIR -33 229 15 207 260 117 13 chr3 208223452 208223529 -9813629 + MIR SINE MIR 40 124 -84 249 256 24 24 chr3 208224066 208224148 -9813010 + MIR SINE MIR 61 142 -66 186 43 0 0 chr3 208224307 208224330 -9812828 + (TTA)n Simple_repeat Simple_repeat 2 24 0 373 325 80 19 chr3 208224341 208224553 -9812605 + MIR SINE MIR 10 234 -28 393 22 0 0 chr3 208225156 208225202 -9811956 + (GAA)n Simple_repeat Simple_repeat 2 47 0 194 294 33 65 chr3 208225439 208225531 -9811627 + MIR3 SINE MIR 113 201 -7 183 80 0 0 chr3 208226103 208226128 -9811030 + (A)n Simple_repeat Simple_repeat 1 25 0 1513 168 82 24 chr3 208227866 208228194 -9808964 - MER7A DNA MER2_type -1 345 1 376 269 205 0 chr3 208228977 208229148 -9808010 - MIR SINE MIR -11 251 46 770 312 76 36 chr3 208229252 208229726 -9807432 - MLT1J LTR MaLR -1 510 18 551 304 7 7 chr3 208231006 208231154 -9806004 - MIR3 SINE MIR -29 179 32 244 345 129 29 chr3 208231814 208231985 -9805173 + L2 LINE L2 2872 3059 -213 1407 224 102 54 chr3 208232033 208232574 -9804584 + MLT1F1 LTR MaLR 2 561 -6 372 300 31 8 chr3 208232655 208232785 -9804373 + L2 LINE L2 3136 3268 -4 213 151 0 0 chr3 208232963 208233016 -9804142 + (CATATA)n Simple_repeat Simple_repeat 3 55 0 190 361 45 41 chr3 208233025 208233269 -9803889 + L2 LINE L2 2545 2789 -525 193 308 109 91 chr3 208233359 208233690 -9803468 + L2 LINE L2 2929 3265 -7 561 274 47 70 chr3 208234952 208235167 -9801991 - MIR SINE MIR -21 241 32 2064 127 10 16 chr3 208235449 208235756 -9801402 + AluSx SINE Alu 1 305 -7 30628 122 13 65 chr3 208235768 208241226 -9795932 + L1PA8 LINE L1 12 5181 -965 6638 72 23 60 chr3 208241229 208242175 -9794983 + L1PA8 LINE L1 5262 6172 0 264 285 14 76 chr3 208242454 208242598 -9794560 - MIR SINE MIR -71 191 57 8142 62 2 1 chr3 208242880 208243848 -9793310 + LTR5 LTR ERVK 1 969 0 214 143 41 0 chr3 208244119 208244168 -9792990 + GA-rich Low_complexity Low_complexity 1 51 0 192 345 97 9 chr3 208244214 208244327 -9792831 + MIR SINE MIR 21 143 -65 180 0 0 0 chr3 208244451 208244471 -9792687 + (T)n Simple_repeat Simple_repeat 1 20 0 26 64 0 0 chr3 208245597 208245644 -9791514 + AT_rich Low_complexity Low_complexity 1 47 0 250 301 44 21 chr3 208245657 208245911 -9791247 + L1P LINE L1 2137 2385 -3761 219 192 19 0 chr3 208246042 208246094 -9791064 + (TA)n Simple_repeat Simple_repeat 1 53 0 310 225 107 64 chr3 208246400 208246587 -9790571 + L1 LINE L1 2756 2950 -3196 235 236 62 98 chr3 208247226 208247501 -9789657 + L1 LINE L1 3671 3935 -2211 1685 251 100 38 chr3 208247705 208248735 -9788423 + L1MC4a LINE L1 1078 2171 -4369 2242 253 77 40 chr3 208248744 208248848 -9788310 + L1MC4a LINE L1 2591 2690 -3850 2586 141 6 0 chr3 208248848 208249210 -9787948 - THE1B LTR MaLR 0 364 1 2242 253 77 40 chr3 208249210 208249999 -9787159 + L1MC4a LINE L1 2690 3449 -3091 2202 106 7 3 chr3 208249999 208250292 -9786866 + AluSp SINE Alu 3 296 -17 2242 253 77 40 chr3 208250292 208250436 -9786722 + L1MC4a LINE L1 3449 3671 -2869 2680 135 48 19 chr3 208250436 208250780 -9786378 + MSTA LTR MaLR 1 361 -67 2117 114 38 3 chr3 208250780 208251070 -9786088 - AluSx SINE Alu -11 301 2 2680 135 48 19 chr3 208251070 208251141 -9786017 + MSTA LTR MaLR 361 428 0 3893 165 38 7 chr3 208251141 208251833 -9785325 + MSTA-int LTR MaLR 1 713 -938 2242 253 77 40 chr3 208251141 208251160 -9785998 + L1MC4a LINE L1 3671 3688 -2852 * 1801 197 85 3 chr3 208251834 208252174 -9784984 + MSTA LTR MaLR 49 416 -12 1126 274 18 84 chr3 208252175 208252793 -9784365 + L1MC4a LINE L1 3663 4239 -2301 21 57 0 0 chr3 208253003 208253038 -9784120 + AT_rich Low_complexity Low_complexity 1 35 0 2670 111 6 0 chr3 208253263 208253616 -9783542 - THE1A LTR MaLR 0 355 1 928 271 66 56 chr3 208253639 208254354 -9782804 + L1MC4a LINE L1 5570 6213 -302 2450 143 31 8 chr3 208254449 208254805 -9782353 + THE1B LTR MaLR 1 364 0 23 78 0 0 chr3 208254943 208254994 -9782164 + AT_rich Low_complexity Low_complexity 1 51 0 237 326 146 0 chr3 208255154 208255243 -9781915 - L2 LINE L2 -31 3241 3140 230 292 73 62 chr3 208255561 208255657 -9781501 + L2 LINE L2 2959 3055 -217 2605 113 6 0 chr3 208255766 208256119 -9781039 + THE1A LTR MaLR 1 355 0 204 356 10 40 chr3 208256924 208257025 -9780133 - MIR3 SINE MIR -109 99 2 210 266 38 25 chr3 208257452 208257531 -9779627 + L2 LINE L2 2657 2736 -578 375 105 0 0 chr3 208257893 208257950 -9779208 + (TG)n Simple_repeat Simple_repeat 2 58 0 263 211 189 32 chr3 208257950 208258045 -9779113 + L2 LINE L2 3204 3313 0 498 283 46 12 chr3 208258080 208258253 -9778905 + MIR SINE MIR 34 212 -50 269 289 21 10 chr3 208258382 208258479 -9778679 + GA-rich Low_complexity Low_complexity 3 100 0 190 271 106 0 chr3 208258481 208258566 -9778592 - MIR SINE MIR -12 250 157 332 326 57 14 chr3 208259306 208259447 -9777711 - MIR SINE MIR -71 191 45 478 325 59 77 chr3 208259631 208260225 -9776933 + L2 LINE L2 2361 2943 -371 2210 98 0 0 chr3 208260616 208260938 -9776220 - AluSx SINE Alu 0 322 1 226 283 20 30 chr3 208260977 208261076 -9776082 + MIR SINE MIR 119 216 -46 257 308 171 8 chr3 208262118 208262235 -9774923 - MIR3 SINE MIR -38 170 35 290 261 174 7 chr3 208262688 208262826 -9774332 + L2 LINE L2 2373 2533 -781 993 186 129 61 chr3 208262831 208263111 -9774047 - MLT1D LTR MaLR -1 504 206 1823 101 25 0 chr3 208263119 208263395 -9773763 - L1MA9 LINE L1 -1 6311 6029 1845 148 68 3 chr3 208263495 208263820 -9773338 - L1MA9 LINE L1 -250 6062 5717 742 216 173 0 chr3 208263848 208264033 -9773125 - MLT1D LTR MaLR -288 217 1 1387 266 76 74 chr3 208264043 208264653 -9772505 + L2 LINE L2 2549 3197 -116 2313 94 0 3 chr3 208264653 208264950 -9772208 + AluSx SINE Alu 1 296 -16 1387 266 76 74 chr3 208264950 208265067 -9772091 + L2 LINE L2 3197 3312 -1 223 238 163 62 chr3 208265095 208265175 -9771983 + MIR SINE MIR 106 193 -15 999 292 70 36 chr3 208265683 208266125 -9771033 + LTR16A1 LTR ERVL 1 457 0 223 261 151 42 chr3 208267804 208267923 -9769235 - MIR3 SINE MIR -19 189 58 2205 108 0 0 chr3 208268349 208268635 -9768523 + AluSg SINE Alu 6 291 -19 379 347 102 40 chr3 208270283 208270557 -9766601 + L2 LINE L2 2941 3231 -41 776 259 31 18 chr3 208271674 208271898 -9765260 + MIR SINE MIR 6 232 -30 227 380 109 0 chr3 208272128 208272220 -9764938 - L2 LINE L2 -55 3217 3116 204 268 59 72 chr3 208272732 208272885 -9764273 - L3 LINE CR1 -180 1397 1247 217 288 129 69 chr3 208273163 208273396 -9763762 - MIR SINE MIR -13 249 3 2281 96 0 0 chr3 208273451 208273743 -9763415 - AluSc SINE Alu -17 292 1 561 381 90 14 chr3 208273744 208274177 -9762981 - L3 LINE CR1 -871 706 241 275 282 153 0 chr3 208274589 208274674 -9762484 + L2 LINE L2 3163 3260 -12 229 298 53 53 chr3 208275512 208275643 -9761515 + MIR SINE MIR 91 221 -41 194 212 0 0 chr3 208277387 208277420 -9759738 + L2 LINE L2 3204 3236 -36 252 0 0 0 chr3 208277435 208277463 -9759695 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 489 318 117 25 chr3 208277879 208278316 -9758842 + L3 LINE CR1 1044 1520 -57 474 285 28 45 chr3 208278391 208278570 -9758588 - MIR SINE MIR -73 189 14 342 291 57 35 chr3 208279557 208279698 -9757460 + MIR SINE MIR 49 192 -70 828 303 69 11 chr3 208280101 208280451 -9756707 + MLT1J2 LTR MaLR 63 432 -18 207 98 73 0 chr3 208281380 208281421 -9755737 + T-rich Low_complexity Low_complexity 2 45 0 477 0 0 0 chr3 208281475 208281528 -9755630 + (CA)n Simple_repeat Simple_repeat 2 54 0 295 267 242 37 chr3 208281672 208281833 -9755325 + MIR3 SINE MIR 4 197 -11 * 356 331 54 8 chr3 208281803 208281933 -9755225 + L2 LINE L2 3137 3272 0 231 290 32 0 chr3 208282318 208282380 -9754778 + L2 LINE L2 3192 3255 -17 388 320 11 39 chr3 208282847 208283028 -9754130 - L2 LINE L2 -181 3091 2916 312 231 66 0 chr3 208283108 208283199 -9753959 - MER103 DNA DNA -1 165 69 243 321 123 0 chr3 208283529 208283635 -9753523 + L3 LINE CR1 1456 1574 -3 361 289 14 104 chr3 208283948 208284110 -9753048 + MIR3 SINE MIR 1 92 -116 1733 186 3 16 chr3 208284110 208284421 -9752737 + AluJo SINE Alu 3 309 -3 361 289 14 104 chr3 208284421 208284469 -9752689 + MIR3 SINE MIR 92 143 -65 323 228 13 0 chr3 208284581 208284660 -9752498 - MIR SINE MIR -64 144 65 1623 153 132 9 chr3 208285093 208285427 -9751731 - THE1C LTR MaLR 0 375 1 181 390 129 14 chr3 208285428 208285723 -9751435 + L2 LINE L2 2589 2917 -397 444 310 21 0 chr3 208286741 208286883 -9750275 - MIR3 SINE MIR 0 208 64 240 243 0 0 chr3 208287384 208287458 -9749700 + (TA)n Simple_repeat Simple_repeat 1 74 0 341 277 21 0 chr3 208287640 208287734 -9749424 + MER94 DNA DNA 35 130 -4 195 352 0 45 chr3 208288844 208288932 -9748226 + L2 LINE L2 3229 3312 -1 2205 225 75 21 chr3 208289064 208289825 -9747333 + L1MC4a LINE L1 7007 7808 0 1190 98 0 0 chr3 208289847 208290000 -9747158 + AluSp SINE Alu 137 289 -24 415 279 48 24 chr3 208290020 208290185 -9746973 + MIR SINE MIR 48 216 -46 558 144 222 0 chr3 208290256 208290409 -9746749 - MER53 DNA DNA -2 187 1 26 30 0 0 chr3 208290650 208290683 -9746475 + AT_rich Low_complexity Low_complexity 1 33 0 200 143 29 0 chr3 208291386 208291421 -9745737 + MIR3 SINE MIR 155 190 -18 441 368 56 13 chr3 208291979 208292210 -9744948 - MIR SINE MIR -13 249 9 223 278 161 62 chr3 208292269 208292431 -9744727 - MIR SINE MIR -70 192 15 531 0 0 0 chr3 208292908 208292967 -9744191 + (CA)n Simple_repeat Simple_repeat 2 60 0 414 270 95 56 chr3 208293351 208293603 -9743555 - MIR SINE MIR 0 262 1 235 298 36 0 chr3 208294094 208294178 -9742980 + MIR SINE MIR 122 208 -54 249 298 69 61 chr3 208294587 208294718 -9742440 + L2 LINE L2 3136 3267 -5 333 158 18 0 chr3 208295891 208295948 -9741210 + L2 LINE L2 3256 3313 0 229 243 9 122 chr3 208295967 208296074 -9741084 + MIR SINE MIR 102 196 -66 481 241 9 17 chr3 208296146 208296262 -9740896 + MIR3 SINE MIR 74 188 -20 203 133 0 0 chr3 208296787 208296817 -9740341 + (CA)n Simple_repeat Simple_repeat 1 30 0 186 380 32 27 chr3 208296955 208297142 -9740016 + L2 LINE L2 2335 2522 -792 321 256 0 12 chr3 208297204 208297290 -9739868 - MLT1I LTR MaLR -7 402 318 384 218 49 63 chr3 208297464 208297606 -9739552 - MLT1J2 LTR MaLR -310 140 1 228 436 10 0 chr3 208298126 208298227 -9738931 + L2 LINE L2 2976 3077 -195 2581 103 25 5 chr3 208298977 208299345 -9737813 - THE1C LTR MaLR 0 375 1 9501 114 37 49 chr3 208299349 208300944 -9736214 - THE1C-int LTR MaLR -4 1576 1 1971 139 41 22 chr3 208300944 208301312 -9735846 - THE1C LTR MaLR 0 375 1 22 35 0 0 chr3 208301856 208301885 -9735273 + AT_rich Low_complexity Low_complexity 1 29 0 4128 150 21 33 chr3 208301888 208302369 -9734789 - L1MB2 LINE L1 -2 6169 5699 2128 108 0 7 chr3 208302369 208302656 -9734502 + AluSg1 SINE Alu 1 285 -24 4128 150 21 33 chr3 208302656 208302942 -9734216 - L1MB2 LINE L1 -472 5699 5411 455 102 0 0 chr3 208304284 208304343 -9732815 + AluS SINE Alu 22 80 -232 276 247 0 0 chr3 208304887 208304964 -9732194 + L1ME4a LINE L1 5986 6062 -59 180 270 16 32 chr3 208305034 208305097 -9732061 + L2 LINE L2 2998 3059 -213 1675 176 0 28 chr3 208305143 208305433 -9731725 + AluJo SINE Alu 1 282 -30 189 0 0 0 chr3 208305435 208305456 -9731702 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 351 44 0 0 chr3 208306117 208306162 -9730996 + (CA)n Simple_repeat Simple_repeat 1 45 0 285 51 0 0 chr3 208307339 208307378 -9729780 + (CA)n Simple_repeat Simple_repeat 2 40 0 311 280 43 11 chr3 208307464 208307557 -9729601 - MIR SINE MIR -12 250 155 750 307 14 2 chr3 208307574 208307818 -9729340 + MIR SINE MIR 13 260 -2 195 184 0 0 chr3 208308020 208308058 -9729100 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 393 246 134 30 chr3 208308541 208308675 -9728483 - L2 LINE L2 -8 3305 3158 431 248 120 10 chr3 208308676 208308869 -9728289 - L2 LINE L2 -294 3019 2803 199 267 228 10 chr3 208308927 208309028 -9728130 - MIR SINE MIR -61 147 25 2940 235 40 29 chr3 208309991 208311138 -9726020 - L1M4 LINE L1 -1443 4703 3544 2138 99 3 0 chr3 208311165 208311484 -9725674 - AluSx SINE Alu 0 320 1 242 190 35 0 chr3 208311516 208311574 -9725584 - AluJo SINE Alu -15 287 228 27 0 0 0 chr3 208311580 208311607 -9725551 + AT_rich Low_complexity Low_complexity 1 27 0 764 195 10 92 chr3 208312056 208312251 -9724907 - AluJo SINE Alu -90 222 44 3120 220 20 63 chr3 208312266 208313437 -9723721 - L1M4 LINE L1 -2660 3486 2367 382 250 103 73 chr3 208313951 208314093 -9723065 + MER63A DNA MER1_type 1 152 -1536 2583 59 0 0 chr3 208314093 208314398 -9722760 + AluY SINE Alu 1 305 -6 382 250 103 73 chr3 208314398 208314459 -9722699 + MER63A DNA MER1_type 152 210 0 456 319 106 74 chr3 208314628 208314811 -9722347 + L2 LINE L2 2766 2942 -330 2155 97 4 0 chr3 208314811 208315123 -9722035 - AluSc SINE Alu 0 313 1 456 319 106 74 chr3 208315123 208315436 -9721722 + L2 LINE L2 2942 3272 0 22 56 0 0 chr3 208315436 208315472 -9721686 + AT_rich Low_complexity Low_complexity 1 36 0 377 298 99 25 chr3 208315495 208315656 -9721502 - MIR SINE MIR -30 232 60 206 312 140 76 chr3 208316165 208316559 -9720599 - L2 LINE L2 -24 3248 2830 597 235 142 31 chr3 208316675 208316837 -9720321 - MER5A DNA MER1_type -6 183 4 332 286 87 24 chr3 208317370 208317585 -9719573 + MIR SINE MIR 4 223 -39 267 308 39 0 chr3 208318008 208318086 -9719072 + MIR SINE MIR 107 187 -75 3304 79 0 13 chr3 208318432 208318889 -9718269 + L1PA13 LINE L1 5707 6157 -6 21 57 0 0 chr3 208319021 208319056 -9718102 + AT_rich Low_complexity Low_complexity 1 35 0 267 256 0 98 chr3 208319239 208319321 -9717837 - MIR SINE MIR -168 94 21 24 32 0 0 chr3 208319775 208319806 -9717352 + AT_rich Low_complexity Low_complexity 1 31 0 356 275 0 9 chr3 208320173 208320282 -9716876 + MER46C DNA MER2_type 229 336 -2 212 329 116 7 chr3 208320285 208320440 -9716718 + L2 LINE L2 2690 2861 -453 182 285 152 25 chr3 208320576 208320734 -9716424 + MIR SINE MIR 59 236 -26 2312 76 0 13 chr3 208320909 208321211 -9715947 + AluY SINE Alu 1 298 -13 200 229 29 0 chr3 208321358 208321428 -9715730 + (TTG)n Simple_repeat Simple_repeat 1 72 0 357 290 99 0 chr3 208322689 208322820 -9714338 - MIR SINE MIR -7 255 112 805 236 44 6 chr3 208324590 208324772 -9712386 - MER5A DNA MER1_type 0 189 1 810 306 28 22 chr3 208325205 208325669 -9711489 + L1MC4a LINE L1 5562 6028 -1780 269 241 83 0 chr3 208328063 208328171 -9708987 + L1ME4a LINE L1 5738 5854 -267 212 241 130 0 chr3 208328509 208328563 -9708595 + MIR SINE MIR 43 103 -105 282 242 16 0 chr3 208328658 208328720 -9708438 + MER5A DNA MER1_type 9 71 -118 382 291 21 122 chr3 208329609 208329798 -9707360 + MIR SINE MIR 14 151 -57 1313 306 51 37 chr3 208329866 208330510 -9706648 + MLT2F LTR ERVL 1 653 -10 322 302 81 13 chr3 208331518 208331667 -9705491 + MIR SINE MIR 75 233 -29 273 163 0 0 chr3 208332467 208332516 -9704642 + (CA)n Simple_repeat Simple_repeat 1 49 0 1909 170 0 0 chr3 208332524 208332824 -9704334 + AluJb SINE Alu 1 300 -12 464 302 97 26 chr3 208332905 208333173 -9703985 + L1MC4a LINE L1 5661 5947 -1861 678 139 22 7 chr3 208333176 208333313 -9703845 + GA-rich Low_complexity Low_complexity 2 140 0 286 230 11 46 chr3 208333372 208333459 -9703699 + L1ME4a LINE L1 5967 6050 -71 24 0 0 0 chr3 208333494 208333518 -9703640 + AT_rich Low_complexity Low_complexity 1 24 0 407 243 29 52 chr3 208333839 208333975 -9703183 + MER94 DNA DNA 1 133 -1 264 227 154 9 chr3 208334056 208334166 -9702992 - MIR SINE MIR -54 208 83 294 29 0 0 chr3 208334334 208334342 -9702816 + (TG)n Simple_repeat Simple_repeat 1 43 0 294 29 0 0 chr3 208334342 208334377 -9702781 + (TG)n Simple_repeat Simple_repeat 1 35 0 2239 102 7 3 chr3 208335262 208335565 -9701593 - AluSc SINE Alu -5 304 1 301 354 34 20 chr3 208336230 208336377 -9700781 - MIR3 SINE MIR -45 163 15 522 210 7 36 chr3 208336595 208336733 -9700425 - ORSL DNA AcHobo -3 272 139 2231 103 0 10 chr3 208337375 208337676 -9699482 + AluSx SINE Alu 1 298 -14 256 296 20 61 chr3 208338089 208338109 -9699049 - MIR3 SINE MIR -46 162 143 1374 165 40 128 chr3 208338109 208338509 -9698649 - MLT1A1 LTR MaLR 0 365 1 256 296 20 61 chr3 208338509 208338586 -9698572 - MIR3 SINE MIR -65 143 69 287 303 74 56 chr3 208339222 208339384 -9697774 + MIR3 SINE MIR 6 170 -38 810 118 0 29 chr3 208339412 208339548 -9697610 - AluSg/x SINE Alu 0 312 181 1623 91 9 14 chr3 208339548 208339768 -9697390 - AluSq SINE Alu -94 219 1 357 364 57 29 chr3 208340492 208340701 -9696457 + L2 LINE L2 3058 3272 0 230 283 0 0 chr3 208340768 208340821 -9696337 + L2 LINE L2 3218 3270 -2 265 393 0 0 chr3 208340886 208340970 -9696188 - L2 LINE L2 -89 3183 3100 319 246 69 54 chr3 208342519 208342602 -9694556 - L1ME3A LINE L1 -5 6165 6078 2851 87 3 14 chr3 208342602 208342970 -9694188 + THE1B LTR MaLR 1 364 0 319 246 69 54 chr3 208342970 208343016 -9694142 - L1ME3A LINE L1 -92 6078 6034 417 306 42 35 chr3 208343076 208343220 -9693938 - MIR3 SINE MIR -22 186 42 10778 224 22 41 chr3 208343295 208345970 -9691188 + L1M2a LINE L1 1 2646 -4522 1067 235 5 0 chr3 208345971 208346184 -9690974 + AluJo SINE Alu 90 303 -9 2675 193 8 4 chr3 208346184 208346718 -9690440 + L1M2a LINE L1 2626 3161 -4007 371 327 67 61 chr3 208346816 208346981 -9690177 + L2 LINE L2 3107 3272 0 188 345 81 0 chr3 208349551 208349638 -9687520 - L3 LINE CR1 0 1577 1484 318 269 170 38 chr3 208349865 208350207 -9686951 + L1ME4a LINE L1 5710 6096 -25 418 258 97 32 chr3 208351550 208351700 -9685458 + MIR SINE MIR 31 191 -67 2183 103 3 41 chr3 208351700 208352020 -9685138 + AluSg SINE Alu 1 308 -2 1723 157 23 10 chr3 208352033 208352332 -9684826 + AluJb SINE Alu 1 303 -9 385 278 97 5 chr3 208353343 208353559 -9683599 + L1ME4a LINE L1 5781 6016 -105 228 290 40 10 chr3 208353608 208353708 -9683450 + L1ME4a LINE L1 5973 6075 -46 1741 162 0 33 chr3 208353792 208354094 -9683064 + AluJb SINE Alu 1 292 -20 689 254 55 6 chr3 208354979 208355160 -9681998 - MIR SINE MIR -9 253 64 8567 89 5 7 chr3 208355178 208356252 -9680906 + MER11C LTR ERVK 1 1071 0 1437 106 23 0 chr3 208356310 208356528 -9680630 + L1MA9 LINE L1 6088 6310 -2 389 285 112 61 chr3 208356546 208356841 -9680317 - L1ME LINE L1 -306 5815 5506 2196 128 81 26 chr3 208357159 208357504 -9679654 + THE1B LTR MaLR 1 364 0 12556 100 3 0 chr3 208357504 208359079 -9678079 + THE1B-int LTR MaLR 1 1580 0 2243 125 54 26 chr3 208359079 208359431 -9677727 + THE1B LTR MaLR 1 362 -2 303 303 43 74 chr3 208359571 208359733 -9677425 - L2 LINE L2 0 3272 3116 184 282 149 63 chr3 208360559 208360733 -9676425 + MIR SINE MIR 3 191 -71 1978 128 35 3 chr3 208360782 208361072 -9676086 - AluSx SINE Alu -13 299 1 557 267 262 14 chr3 208361078 208361422 -9675736 + L2 LINE L2 1664 2092 -1222 493 289 15 0 chr3 208361647 208361782 -9675376 + L2 LINE L2 2086 2222 -1092 264 200 0 0 chr3 208361782 208361847 -9675311 + (TA)n Simple_repeat Simple_repeat 2 66 0 286 236 67 22 chr3 208361849 208361938 -9675220 + L1MC4 LINE L1 6617 6709 -1333 1701 247 121 51 chr3 208361939 208362882 -9674276 + L2 LINE L2 2239 3252 -61 21 0 0 0 chr3 208363559 208363580 -9673578 + AT_rich Low_complexity Low_complexity 1 21 0 727 300 35 18 chr3 208364851 208365134 -9672024 - Charlie8 DNA MER1_type -2129 288 1 200 250 0 21 chr3 208365475 208365523 -9671635 - L3 LINE CR1 -13 1564 1518 390 291 50 14 chr3 208365592 208365733 -9671425 + MIR3 SINE MIR 37 182 -26 1804 88 0 0 chr3 208365762 208365990 -9671168 + AluSg/x SINE Alu 85 312 0 255 103 0 0 chr3 208366095 208366134 -9671024 + (CA)n Simple_repeat Simple_repeat 2 40 0 277 355 101 14 chr3 208367815 208367953 -9669205 + L2 LINE L2 3121 3270 -2 203 306 10 61 chr3 208367976 208368074 -9669084 + MIR SINE MIR 56 148 -114 233 324 47 47 chr3 208369440 208369588 -9667570 + MIR SINE MIR 47 194 -68 2231 84 0 3 chr3 208369854 208370140 -9667018 + AluSx SINE Alu 1 285 -27 457 317 7 28 chr3 208371305 208371450 -9665708 + MIR3 SINE MIR 5 146 -62 869 206 79 0 chr3 208371647 208371812 -9665346 + MER45A DNA AcHobo 1 178 0 185 234 43 121 chr3 208372776 208372917 -9664241 + MIR3 SINE MIR 73 202 -6 562 237 36 29 chr3 208373759 208373898 -9663260 + MER5A DNA MER1_type 47 186 -3 2250 119 3 0 chr3 208374858 208375168 -9661990 + AluSx SINE Alu 1 311 -1 221 250 0 36 chr3 208375601 208375657 -9661501 - MIR3 SINE MIR -52 156 103 2180 117 0 3 chr3 208376022 208376330 -9660828 - AluSq SINE Alu -6 307 1 525 277 14 7 chr3 208376381 208376529 -9660629 - MIR SINE MIR -5 257 109 252 319 99 79 chr3 208376942 208377027 -9660131 + L2 LINE L2 2872 2954 -359 2065 126 3 10 chr3 208377027 208377328 -9659830 + AluSg SINE Alu 1 299 -11 252 319 99 79 chr3 208377328 208377674 -9659484 + L2 LINE L2 2954 3312 -1 21 0 0 0 chr3 208377834 208377855 -9659303 + AT_rich Low_complexity Low_complexity 1 21 0 220 217 43 14 chr3 208377939 208378008 -9659150 - MIR SINE MIR -116 146 76 297 51 0 0 chr3 208379451 208379490 -9657668 + (CA)n Simple_repeat Simple_repeat 1 39 0 403 297 48 0 chr3 208380115 208380260 -9656898 + HsTC2 DNA Tc2 223 374 -1524 216 86 0 0 chr3 208380367 208380402 -9656756 + (A)n Simple_repeat Simple_repeat 1 35 0 397 315 33 25 chr3 208580471 208580747 -9456411 + L1MC4a LINE L1 5659 5936 -1872 747 196 12 6 chr3 208581924 208582087 -9455071 - L1MD2 LINE L1 -7 6352 6189 308 123 108 0 chr3 208582116 208582181 -9454977 - L1MA4A LINE L1 -16 6287 6216 979 275 144 14 chr3 208583187 208583547 -9453611 + L2 LINE L2 1912 2318 -996 694 305 4 13 chr3 208583545 208583784 -9453374 - L2 LINE L2 -225 3088 2852 * 1559 314 37 37 chr3 208583851 208584262 -9452896 + L2 LINE L2 2299 2709 -604 1988 112 3 17 chr3 208584262 208584549 -9452609 - AluSx SINE Alu -17 295 13 1559 314 37 37 chr3 208584549 208585165 -9451993 + L2 LINE L2 2709 3312 -1 21 0 0 0 chr3 208586038 208586059 -9451099 + AT_rich Low_complexity Low_complexity 1 21 0 366 335 57 11 chr3 208586330 208586506 -9450652 - MIR SINE MIR -26 236 53 218 369 62 28 chr3 208587162 208587338 -9449820 - L2 LINE L2 -219 3053 2872 282 173 53 13 chr3 208588552 208588627 -9448531 - MER116 DNA Mariner 0 80 3 607 240 94 16 chr3 208588879 208589071 -9448087 + L1MA7 LINE L1 5984 6190 -101 248 290 7 97 chr3 208589073 208589218 -9447940 - L3 LINE CR1 -257 1320 1189 401 373 62 21 chr3 208589244 208589630 -9447528 + L2 LINE L2 1966 2367 -947 1076 199 35 42 chr3 208589769 208590055 -9447103 - L1MB8 LINE L1 0 6178 5895 252 211 0 0 chr3 208590057 208590109 -9447049 + L1MB5 LINE L1 5898 5949 -225 1241 210 16 89 chr3 208590158 208590773 -9446385 - L1MB8 LINE L1 -293 5885 5350 361 247 81 71 chr3 208590779 208591062 -9446096 - L1MB8 LINE L1 -2536 3610 3325 1544 206 13 75 chr3 208591079 208591124 -9446034 - MLT2B3 LTR ERVL 0 554 508 1869 179 0 49 chr3 208591124 208591509 -9445649 - MER47A DNA MER2_type 0 366 1 1544 206 13 75 chr3 208591509 208591852 -9445306 - MLT2B3 LTR ERVL -46 508 190 338 259 54 36 chr3 208592134 208592288 -9444870 - L1ME LINE L1 -5905 165 6 240 333 89 52 chr3 208594292 208594661 -9442497 + L1MDa LINE L1 291 673 -5446 402 310 49 22 chr3 208594699 208594925 -9442233 + L1MDa LINE L1 974 1205 -4914 271 292 95 10 chr3 208595007 208595287 -9441871 + L1MDa LINE L1 1358 1629 -861 3720 194 16 0 chr3 208595767 208596395 -9440763 + L1PA13 LINE L1 1 638 -6149 585 304 97 5 chr3 208596401 208596618 -9440540 - MIR SINE MIR -15 247 11 363 290 109 44 chr3 208596704 208596973 -9440185 + L1MDa LINE L1 2168 2413 -3716 1020 187 76 0 chr3 208597375 208597573 -9439585 + MER20 DNA MER1_type 1 213 -6 191 320 92 46 chr3 208597743 208597896 -9439262 - L2 LINE L2 -5 3308 3149 450 276 43 12 chr3 208598039 208598202 -9438956 - MIR3 SINE MIR -3 205 38 1088 281 49 48 chr3 208598288 208598316 -9438842 - MLT2B1 LTR ERVL -13 541 515 366 61 0 0 chr3 208598316 208598365 -9438793 + (TG)n Simple_repeat Simple_repeat 2 50 0 1088 281 49 48 chr3 208598365 208598795 -9438363 - MLT2B1 LTR ERVL -39 515 3 428 250 36 26 chr3 208598993 208599185 -9437973 - HAL1 LINE L1 -1367 1140 947 2219 138 11 13 chr3 208599278 208599654 -9437504 + THE1C LTR MaLR 1 375 0 27 49 0 0 chr3 208599841 208599882 -9437276 + AT_rich Low_complexity Low_complexity 1 41 0 6201 217 35 23 chr3 208600074 208602252 -9434906 + L1MA4 LINE L1 4 2191 -4067 10501 36 3 107 chr3 208602258 208603804 -9433354 + SVA Other Other 1 1384 -2 548 147 52 81 chr3 208603841 208603899 -9433259 + LTR49-int LTR ERV1 3141 3199 -3132 2137 134 3 6 chr3 208603899 208604213 -9432945 - AluSq SINE Alu 0 313 1 548 147 52 81 chr3 208604213 208604290 -9432868 + LTR49-int LTR ERV1 3199 3272 -3059 323 234 0 0 chr3 208604350 208604414 -9432744 + LTR49-int LTR ERV1 3275 3338 -2993 496 184 20 0 chr3 208604473 208604571 -9432587 + LTR49-int LTR ERV1 3348 3447 -2884 14211 196 22 13 chr3 208604757 208606352 -9430806 + L1MA4 LINE L1 2169 3748 -2734 2073 191 59 5 chr3 208606352 208606756 -9430402 + MSTB LTR MaLR 1 426 0 14211 196 22 13 chr3 208606756 208607259 -9429899 + L1MA4 LINE L1 3748 4245 -2237 439 130 39 0 chr3 208607259 208607336 -9429822 - MADE1 DNA Mariner 0 80 1 14211 196 22 13 chr3 208607336 208609504 -9427654 + L1MA4 LINE L1 4245 6478 -4 244 220 110 51 chr3 208609703 208609821 -9427337 + L1MC/D LINE L1 5342 5466 -2342 716 297 66 9 chr3 208609858 208610070 -9427088 + MIR SINE MIR 18 241 -21 368 319 38 30 chr3 208610132 208610367 -9426791 + L1MC/D LINE L1 5584 5820 -1988 1321 245 136 7 chr3 208610392 208610854 -9426304 - Charlie1b DNA MER1_type -1 522 1 926 236 24 10 chr3 208610854 208611062 -9426096 - MER97a DNA MER1_type? -683 211 1 273 257 20 89 chr3 208611990 208612091 -9425067 - MIR3 SINE MIR -6 202 109 2055 127 52 19 chr3 208612205 208612568 -9424590 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr3 208612687 208612708 -9424450 + AT_rich Low_complexity Low_complexity 1 21 0 212 189 0 0 chr3 208614839 208614876 -9422282 + A-rich Low_complexity Low_complexity 1 37 0 234 248 18 110 chr3 208618336 208618445 -9418713 - Charlie8 DNA MER1_type -2318 99 1 731 133 8 0 chr3 208618715 208618843 -9418315 + (TTCC)n Simple_repeat Simple_repeat 1 129 0 379 301 65 59 chr3 208618850 208619036 -9418122 - MIR SINE MIR -70 192 6 256 417 25 0 chr3 208619156 208619276 -9417882 + L2 LINE L2 3141 3263 -9 259 289 27 45 chr3 208619575 208619678 -9417480 + MIR SINE MIR 10 113 -95 22 0 0 0 chr3 208619806 208619828 -9417330 + AT_rich Low_complexity Low_complexity 1 22 0 244 368 63 0 chr3 208620400 208620495 -9416663 - L3 LINE CR1 -905 672 572 251 256 13 13 chr3 208620922 208621000 -9416158 - LTR50 LTR ERVL -6 789 712 204 393 59 0 chr3 208621339 208621474 -9415684 - MIR3 SINE MIR -21 187 45 474 338 96 0 chr3 208622148 208622429 -9414729 - L2 LINE L2 -11 3302 2995 1227 302 40 7 chr3 208622505 208623143 -9414015 + L2 LINE L2 2513 3173 -140 4461 192 62 9 chr3 208623200 208624073 -9413085 - L1MC3 LINE L1 -8 7777 6845 231 36 0 0 chr3 208624073 208624101 -9413057 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 4461 192 62 9 chr3 208624101 208624203 -9412955 - L1MC3 LINE L1 -940 6845 6750 339 266 13 13 chr3 208624213 208624292 -9412866 + L2 LINE L2 3235 3313 0 208 364 101 23 chr3 208624606 208624735 -9412423 + L2 LINE L2 3116 3254 -18 296 310 80 18 chr3 208625026 208625139 -9412019 - MIR3 SINE MIR -51 157 72 186 231 62 31 chr3 208625555 208625620 -9411538 - MIR SINE MIR -108 100 34 236 325 53 44 chr3 208625786 208625900 -9411258 - L2 LINE L2 -5 3267 3153 22 0 0 0 chr3 208626949 208626971 -9410187 + AT_rich Low_complexity Low_complexity 1 22 0 197 321 48 36 chr3 208627204 208627288 -9409870 + L2 LINE L2 3170 3254 -18 430 339 33 16 chr3 208628682 208628865 -9408293 - MIR SINE MIR -31 231 46 222 37 0 0 chr3 208628978 208629005 -9408153 + (TC)n Simple_repeat Simple_repeat 1 27 0 31 26 0 0 chr3 208629977 208630015 -9407143 + AT_rich Low_complexity Low_complexity 1 38 0 236 265 29 0 chr3 208630023 208630091 -9407067 - L1ME LINE L1 -298 5823 5754 4025 173 30 83 chr3 208630113 208630830 -9406328 - L1MB2 LINE L1 -1 6170 5517 189 74 0 0 chr3 208630830 208630857 -9406301 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 4025 173 30 83 chr3 208630857 208631118 -9406040 - L1MB2 LINE L1 -654 5517 5244 366 366 72 38 chr3 208631128 208631519 -9405639 - L1ME LINE L1 -415 5706 5303 200 357 48 16 chr3 208632729 208632855 -9404303 + L2 LINE L2 2932 3061 -211 957 208 0 0 chr3 208633257 208633430 -9403728 - AluSg/x SINE Alu -10 302 130 2030 158 62 38 chr3 208633445 208633863 -9403295 - MSTA LTR MaLR 0 428 1 198 360 9 9 chr3 208634073 208634184 -9402974 - MIR SINE MIR -119 143 33 494 226 0 0 chr3 208634687 208634802 -9402356 + L1ME3A LINE L1 6051 6165 -5 27 0 0 0 chr3 208634803 208634830 -9402328 + AT_rich Low_complexity Low_complexity 1 27 0 261 298 33 77 chr3 208634934 208635115 -9402043 + MIR SINE MIR 53 225 -37 2068 104 14 0 chr3 208635656 208635945 -9401213 + AluSx SINE Alu 1 293 -19 481 285 110 31 chr3 208635999 208636227 -9400931 + MIR SINE MIR 3 248 -14 3075 174 58 30 chr3 208637188 208637220 -9399938 + MER67B LTR ERV1 1 31 -630 1870 19 0 0 chr3 208637220 208637429 -9399729 - AluY SINE Alu -17 294 86 3075 174 58 30 chr3 208637429 208638039 -9399119 + MER67B LTR ERV1 31 661 0 2310 109 0 0 chr3 208638198 208638510 -9398648 + AluSx SINE Alu 1 312 0 205 176 0 0 chr3 208638935 208638969 -9398189 + T-rich Low_complexity Low_complexity 2 35 0 336 143 0 0 chr3 208639051 208639107 -9398051 + (TA)n Simple_repeat Simple_repeat 2 57 0 307 190 0 0 chr3 208639108 208639166 -9397992 - L1MC4 LINE L1 -1337 6705 6648 437 274 171 47 chr3 208639303 208639765 -9397393 - L2 LINE L2 -8 3305 2719 554 283 104 21 chr3 208639776 208640016 -9397142 - MIR SINE MIR 0 262 3 1677 260 177 21 chr3 208640067 208640785 -9396373 - L2 LINE L2 -656 2658 1829 2162 144 28 34 chr3 208641093 208641530 -9395628 - L1MA3 LINE L1 0 6305 5872 465 318 104 9 chr3 208641925 208642145 -9395013 + MIR SINE MIR 12 252 -10 476 215 9 9 chr3 208642974 208643081 -9394077 - L2 LINE L2 -1 3312 3206 23 54 0 0 chr3 208643475 208643512 -9393646 + GC_rich Low_complexity Low_complexity 1 37 0 513 330 16 0 chr3 208643843 208644025 -9393133 - MIR3 SINE MIR -1 207 23 397 248 0 150 chr3 208644716 208644942 -9392216 + MIR SINE MIR 36 227 -35 365 315 105 50 chr3 208646197 208646416 -9390742 + MIR SINE MIR 20 250 -12 203 398 59 0 chr3 208646458 208646576 -9390582 - MIR3 SINE MIR -79 129 5 234 264 0 0 chr3 208648037 208648090 -9389068 - MIR SINE MIR -44 218 166 2282 117 19 32 chr3 208648138 208648507 -9388651 - THE1B LTR MaLR 0 364 1 230 259 222 30 chr3 208648651 208648786 -9388372 + MIR3 SINE MIR 48 208 0 230 233 0 0 chr3 208648773 208648816 -9388342 + L3 LINE CR1 1535 1577 0 395 260 61 0 chr3 208648950 208649086 -9388072 - MIR SINE MIR -58 204 59 21 0 0 0 chr3 208649342 208649363 -9387795 + AT_rich Low_complexity Low_complexity 1 21 0 332 258 31 10 chr3 208650572 208650669 -9386489 + MIR SINE MIR 83 181 -81 303 336 16 70 chr3 208650953 208651081 -9386077 - MIR3 SINE MIR -85 123 3 290 295 74 27 chr3 208651816 208651869 -9385289 + MIR SINE MIR 101 150 -112 664 59 20 10 chr3 208651869 208651971 -9385187 + (TTCC)n Simple_repeat Simple_repeat 4 106 0 600 59 0 0 chr3 208651973 208652058 -9385100 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 290 295 74 27 chr3 208652058 208652150 -9385008 + MIR SINE MIR 150 256 -6 197 302 0 0 chr3 208652308 208652361 -9384797 + L3 LINE CR1 1240 1292 -285 247 308 38 19 chr3 208652506 208652632 -9384526 + MIR SINE MIR 46 218 -44 237 323 121 0 chr3 208652689 208652788 -9384370 + L2 LINE L2 2937 3047 -266 5793 116 39 5 chr3 208652964 208654204 -9382954 - L1PA13 LINE L1 -8 6155 4873 482 268 36 0 chr3 208654204 208654316 -9382842 + L2 LINE L2 3177 3292 -21 254 203 0 29 chr3 208654441 208654510 -9382648 + (CATATA)n Simple_repeat Simple_repeat 6 72 0 197 160 0 40 chr3 208654570 208654620 -9382538 + (TATATG)n Simple_repeat Simple_repeat 5 52 0 219 293 104 37 chr3 208654752 208654916 -9382242 - L2 LINE L2 -126 3187 3013 257 284 75 30 chr3 208654961 208655095 -9382063 - L2 LINE L2 -432 2882 2743 328 367 130 0 chr3 208655757 208655926 -9381232 - MIR SINE MIR -31 231 41 494 268 143 19 chr3 208656095 208656304 -9380854 + MIR SINE MIR 7 241 -21 396 0 0 0 chr3 208657420 208657464 -9379694 + (CA)n Simple_repeat Simple_repeat 2 45 0 268 250 0 0 chr3 208657465 208657521 -9379637 + L2 LINE L2 3258 3313 0 623 234 166 24 chr3 208658610 208658850 -9378308 - MLT2F LTR ERVL -93 570 365 2147 66 3 75 chr3 208658850 208658999 -9378159 + AluSg SINE Alu 1 114 -196 2499 50 10 0 chr3 208658999 208659297 -9377861 + AluSc SINE Alu 1 301 -8 2147 66 3 75 chr3 208659297 208659479 -9377679 + AluSg SINE Alu 114 308 -2 623 234 166 24 chr3 208659479 208659665 -9377493 - MLT2F LTR ERVL -298 365 27 191 371 194 6 chr3 208659835 208660010 -9377148 - L2 LINE L2 -509 2805 2598 278 231 77 33 chr3 208660428 208660519 -9376639 - MIR SINE MIR -57 205 111 502 276 76 0 chr3 208660698 208660843 -9376315 + FAM SINE Alu 1 156 -19 25 0 0 0 chr3 208660848 208660873 -9376285 + AT_rich Low_complexity Low_complexity 1 25 0 389 238 181 52 chr3 208661782 208661851 -9375307 - MIR SINE MIR -1 261 202 2375 43 0 0 chr3 208661851 208662128 -9375030 - AluY SINE Alu -7 304 28 389 238 181 52 chr3 208662128 208662268 -9374890 - MIR SINE MIR -60 202 25 671 322 70 21 chr3 208662716 208663002 -9374156 + L3 LINE CR1 1269 1568 -9 180 152 0 0 chr3 208663546 208663579 -9373579 + T-rich Low_complexity Low_complexity 1 33 0 299 309 142 25 chr3 208664304 208664466 -9372692 + MIR3 SINE MIR 5 185 -23 213 39 0 0 chr3 208664507 208664533 -9372625 + (A)n Simple_repeat Simple_repeat 1 26 0 282 245 21 0 chr3 208666189 208666283 -9370875 + L1ME LINE L1 5730 5825 -296 21 0 0 0 chr3 208666810 208666831 -9370327 + AT_rich Low_complexity Low_complexity 1 21 0 189 107 0 0 chr3 208667581 208667609 -9369549 + (TTCTC)n Simple_repeat Simple_repeat 4 31 0 515 303 127 0 chr3 208667796 208667961 -9369197 + MER5A DNA MER1_type 4 189 0 223 231 28 161 chr3 208667985 208668128 -9369030 + L2 LINE L2 3144 3267 -5 2551 105 24 11 chr3 208668274 208668644 -9368514 + THE1C LTR MaLR 1 375 0 214 139 58 12 chr3 208669269 208669355 -9367803 + A-rich Low_complexity Low_complexity 1 90 0 26 0 0 0 chr3 208669528 208669554 -9367604 + AT_rich Low_complexity Low_complexity 1 26 0 216 360 10 0 chr3 208669822 208669922 -9367236 + CT-rich Low_complexity Low_complexity 2 102 0 2645 134 26 13 chr3 208670281 208670737 -9366421 - MER67C LTR ERV1 0 710 249 1242 191 22 47 chr3 208670724 208671044 -9366114 - MER67C LTR ERV1 -398 312 1 * 774 180 45 6 chr3 208671224 208671402 -9365756 - L1MB3 LINE L1 -30 6153 5969 373 340 27 16 chr3 208671889 208672077 -9365081 + MIR SINE MIR 34 223 -39 193 326 0 0 chr3 208672105 208672154 -9365004 + L2 LINE L2 3223 3271 -1 180 0 0 0 chr3 208672473 208672493 -9364665 + (T)n Simple_repeat Simple_repeat 1 20 0 319 325 80 83 chr3 208672935 208673274 -9363884 - L2 LINE L2 -2 3270 2933 291 241 30 45 chr3 208674314 208674447 -9362711 - MER103 DNA DNA -9 157 27 723 279 0 6 chr3 208676143 208676315 -9360843 - MIR SINE MIR -37 225 55 257 300 82 9 chr3 208677372 208677482 -9359676 - MIR SINE MIR -73 135 18 405 284 89 35 chr3 208677926 208678095 -9359063 - MIR SINE MIR -54 208 31 1526 182 44 3 chr3 208678611 208678907 -9358251 - MER61A LTR ERV1 -35 308 1 19245 90 13 8 chr3 208678907 208682082 -9355076 - MER61A-int LTR ERV1 -1 5216 1983 1100 109 27 8 chr3 208682081 208682290 -9354868 - MER61A-int LTR ERV1 -2659 4337 1434 * 1826 93 45 24 chr3 208682295 208682586 -9354572 - MER61A-int LTR ERV1 -3963 1254 958 3653 129 65 93 chr3 208682586 208683372 -9353786 - MER61A-int LTR ERV1 -4377 840 79 2796 7 0 3 chr3 208683372 208683682 -9353476 + AluYa5 SINE Alu 1 309 -2 3653 129 65 93 chr3 208683682 208683757 -9353401 - MER61A-int LTR ERV1 -5138 79 3 1444 202 88 6 chr3 208683759 208684076 -9353082 - MER61A LTR ERV1 0 343 1 354 218 61 48 chr3 208684076 208684223 -9352935 + MER103 DNA DNA 13 161 -5 324 0 0 0 chr3 208684322 208684358 -9352800 + (TG)n Simple_repeat Simple_repeat 2 37 0 516 244 86 18 chr3 208685073 208685297 -9351861 - L1MC4 LINE L1 -221 7587 7378 488 16 16 0 chr3 208685515 208685576 -9351582 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 225 209 157 26 chr3 208685714 208685829 -9351329 - L1ME3 LINE L1 -68 6094 5965 229 244 0 0 chr3 208685970 208686015 -9351143 + (TA)n Simple_repeat Simple_repeat 2 46 0 245 233 29 68 chr3 208686016 208686119 -9351039 - MIR SINE MIR -56 206 108 218 236 57 81 chr3 208686443 208686566 -9350592 - MIR SINE MIR -1 261 142 2709 244 33 24 chr3 208687387 208688235 -9348923 - L1ME1 LINE L1 -17 6149 5294 677 258 24 0 chr3 208688232 208688445 -9348713 - L1ME1 LINE L1 -1424 4722 4505 * 757 231 25 38 chr3 208688445 208688683 -9348475 - MLT1E2 LTR MaLR -2 624 390 1617 241 65 22 chr3 208688684 208689418 -9347740 - L1ME1 LINE L1 -2697 3449 2684 539 205 16 16 chr3 208691355 208691477 -9345681 + L3 LINE CR1 648 769 -808 644 80 0 0 chr3 208692195 208692283 -9344875 + L1MA1 LINE L1 6166 6253 -49 389 101 0 14 chr3 208692288 208692357 -9344801 + (CA)n Simple_repeat Simple_repeat 1 68 0 213 351 9 36 chr3 208692810 208692921 -9344237 + MIR SINE MIR 5 112 -150 231 333 48 9 chr3 208693501 208693606 -9343552 + MIR SINE MIR 2 110 -152 396 285 24 0 chr3 208693702 208693825 -9343333 + MIR SINE MIR 137 262 0 241 268 56 0 chr3 208694624 208694695 -9342463 - L3 LINE CR1 -159 1418 1344 216 86 0 0 chr3 208694761 208694796 -9342362 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 606 300 88 25 chr3 208694920 208695160 -9341998 - L3 LINE CR1 -286 1291 1037 334 274 134 45 chr3 208695382 208695539 -9341619 + L2 LINE L2 2988 3158 -155 222 286 0 20 chr3 208695543 208695690 -9341468 + CT-rich Low_complexity Low_complexity 4 147 0 327 244 47 87 chr3 208695703 208695830 -9341328 + L2 LINE L2 3192 3313 0 198 353 7 36 chr3 208696981 208697120 -9340038 - MIR SINE MIR -50 212 78 204 324 116 58 chr3 208697774 208697999 -9339159 - MIR SINE MIR -24 238 1 1902 109 8 4 chr3 208700145 208700439 -9336719 - AluSp SINE Alu 0 315 21 1624 189 3 18 chr3 208700823 208701109 -9336049 + AluJb SINE Alu 1 282 -30 571 188 45 0 chr3 208701180 208701313 -9335845 - L1MA8 LINE L1 -23 6268 6130 1424 130 31 0 chr3 208701328 208701551 -9335607 - MER30 DNA MER1_type 0 230 1 21 82 0 0 chr3 208701826 208701875 -9335283 + AT_rich Low_complexity Low_complexity 1 49 0 335 237 15 76 chr3 208701992 208702123 -9335035 + GA-rich Low_complexity Low_complexity 2 124 0 2640 14 0 0 chr3 208702449 208702741 -9334417 - AluYa5 SINE Alu -4 307 16 332 246 173 9 chr3 208704849 208704959 -9332199 - L2 LINE L2 0 3272 3145 207 325 104 24 chr3 208705174 208705386 -9331772 - L2 LINE L2 -424 2890 2662 441 284 77 24 chr3 208705389 208705597 -9331561 + L1MC/D LINE L1 3 221 -5898 405 319 78 49 chr3 208705630 208705978 -9331180 + L1MC/D LINE L1 4898 5255 -874 281 263 45 112 chr3 208705999 208706425 -9330733 + L1MC/D LINE L1 5294 5680 -2111 2438 24 41 0 chr3 208706425 208706715 -9330443 + AluY SINE Alu 1 302 -9 281 263 45 112 chr3 208706715 208706817 -9330341 + L1MC/D LINE L1 5680 5787 -2004 280 299 102 41 chr3 208706896 208707093 -9330065 - MER63A DNA MER1_type 0 210 2 1501 142 65 55 chr3 208707163 208707438 -9329720 - AluJo SINE Alu -34 278 1 396 152 0 0 chr3 208707520 208707586 -9329572 - L1PA16 LINE L1 -267 5899 5834 * 944 137 166 15 chr3 208707584 208707789 -9329369 + L1PA16 LINE L1 5929 6164 -2 2460 106 22 11 chr3 208708242 208708602 -9328556 - THE1B LTR MaLR 0 364 1 319 363 59 2 chr3 208708970 208709139 -9328019 - MIR SINE MIR -64 144 16 2216 180 38 24 chr3 208709242 208709776 -9327382 - L1MB8 LINE L1 -91 6087 5547 447 218 5 19 chr3 208709892 208710023 -9327135 - L1MA10 LINE L1 -480 5694 5563 * 2500 194 29 40 chr3 208709989 208710599 -9326559 + L1MA10 LINE L1 5720 6333 -1 287 252 0 47 chr3 208710833 208710933 -9326225 + MIR SINE MIR 115 207 -55 306 317 29 0 chr3 208711352 208711456 -9325702 - L2 LINE L2 -1 3271 3165 326 259 47 0 chr3 208711624 208711709 -9325449 + MIR SINE MIR 52 140 -68 685 316 34 75 chr3 208711842 208711901 -9325257 + L2 LINE L2 2550 2610 -703 2169 110 10 0 chr3 208711901 208712209 -9324949 - AluSq SINE Alu -1 312 2 685 316 34 75 chr3 208712209 208712907 -9324251 + L2 LINE L2 2610 3312 -1 26 0 0 0 chr3 208713465 208713491 -9323667 + AT_rich Low_complexity Low_complexity 1 26 0 2861 218 78 20 chr3 208713498 208714365 -9322793 - L1ME1 LINE L1 -19 6147 5231 2193 120 3 3 chr3 208715123 208715432 -9321726 + AluSx SINE Alu 1 309 -3 257 321 63 44 chr3 208715807 208715966 -9321192 + L2 LINE L2 3109 3270 -2 393 263 53 76 chr3 208716679 208716850 -9320308 - MIR3 SINE MIR 0 208 42 * 628 270 52 24 chr3 208716805 208717016 -9320142 + MIR SINE MIR 27 243 -19 265 217 167 0 chr3 208717070 208717130 -9320028 - MIR SINE MIR -117 91 22 2459 80 0 0 chr3 208717703 208718005 -9319153 - AluSc SINE Alu -7 302 1 321 293 76 19 chr3 208718564 208718721 -9318437 + MIR3 SINE MIR 40 205 -3 246 311 68 0 chr3 208719681 208719784 -9317374 - MIR SINE MIR -16 246 137 2043 113 13 13 chr3 208719839 208720149 -9317009 - AluSx SINE Alu -2 310 1 232 282 289 0 chr3 208720787 208720929 -9316229 - MIR SINE MIR -28 234 52 1815 118 8 4 chr3 208721606 208721868 -9315290 - AluSx SINE Alu -5 307 45 206 167 0 24 chr3 208722415 208722457 -9314701 + T-rich Low_complexity Low_complexity 4 44 0 2661 91 6 6 chr3 208723047 208723411 -9313747 - THE1B LTR MaLR 0 364 1 446 265 172 20 chr3 208723711 208723862 -9313296 - MER5A DNA MER1_type -7 182 9 621 311 37 70 chr3 208723875 208724332 -9312826 - MLT1J LTR MaLR -69 442 1 208 289 148 34 chr3 208724397 208724546 -9312612 - MIR SINE MIR 0 262 97 477 240 37 130 chr3 208724557 208724857 -9312301 + L2 LINE L2 3042 3313 0 216 164 73 0 chr3 208725362 208725417 -9311741 + (TATAA)n Simple_repeat Simple_repeat 3 61 0 190 314 203 0 chr3 208725557 208725675 -9311483 - MIR SINE MIR -53 209 68 371 182 0 15 chr3 208725786 208725852 -9311306 + L2 LINE L2 3200 3264 -8 263 245 88 10 chr3 208725978 208726080 -9311078 + MIR SINE MIR 95 204 -58 620 298 171 9 chr3 208726937 208727307 -9309851 - MLT1J2 LTR MaLR -11 435 1 1035 280 73 26 chr3 208727398 208727866 -9309292 + Charlie2b DNA MER1_type 170 659 -2123 284 258 55 8 chr3 208727965 208728093 -9309065 + Charlie2a DNA MER1_type 1466 1599 -1263 23 33 0 0 chr3 208728113 208728143 -9309015 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr3 208728174 208728206 -9308952 + AT_rich Low_complexity Low_complexity 1 32 0 287 283 13 33 chr3 208728241 208728393 -9308765 - HAL1 LINE L1 -107 2400 2252 2137 266 95 52 chr3 208728501 208729929 -9307229 - HAL1 LINE L1 -429 2078 590 450 197 82 16 chr3 208730250 208730372 -9306786 - MLT1I LTR MaLR -273 136 7 405 286 24 0 chr3 208730378 208730504 -9306654 - HAL1 LINE L1 -2209 298 170 2306 106 3 0 chr3 208730574 208730877 -9306281 - AluSx SINE Alu -8 304 1 505 254 175 3 chr3 208730893 208731208 -9305950 + Charlie2a DNA MER1_type 1595 1963 -899 811 320 79 8 chr3 208731321 208731712 -9305446 - MLT1H LTR MaLR -115 434 16 405 237 132 0 chr3 208731727 208731879 -9305279 + Charlie2a DNA MER1_type 1957 2128 -734 26 74 0 0 chr3 208731969 208732023 -9305135 + AT_rich Low_complexity Low_complexity 1 54 0 873 241 81 17 chr3 208732060 208732405 -9304753 + Charlie2a DNA MER1_type 2445 2811 -51 371 288 59 0 chr3 208732694 208732812 -9304346 - MLT1H LTR MaLR -410 139 15 389 194 61 0 chr3 208732836 208732934 -9304224 + Charlie2a DNA MER1_type 1973 2076 -786 779 158 251 23 chr3 208733039 208733298 -9303860 + MER33 DNA MER1_type 5 322 -2 341 192 13 13 chr3 208734483 208734561 -9302597 + Charlie5 DNA MER1_type 2506 2583 -29 224 0 65 0 chr3 208734930 208734961 -9302197 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 2110 164 10 13 chr3 208735136 208735519 -9301639 - MLT1B LTR MaLR -8 382 1 347 347 29 23 chr3 208735853 208736026 -9301132 + MIR3 SINE MIR 16 189 -19 204 288 236 29 chr3 208736958 208737271 -9299887 - L2 LINE L2 0 3313 2936 2813 208 14 17 chr3 208737737 208738318 -9298840 - MER7C DNA MER2_type -22 580 2 22 0 0 0 chr3 208739955 208739977 -9297181 + AT_rich Low_complexity Low_complexity 1 22 0 673 242 46 35 chr3 208740072 208740357 -9296801 + L1M4 LINE L1 2262 2549 -3597 1606 241 28 60 chr3 208740410 208741106 -9296052 + L1MC5 LINE L1 6861 7526 -435 233 236 116 86 chr3 208741158 208741391 -9295767 + L1ME3A LINE L1 5922 6161 -9 651 235 86 40 chr3 208741441 208741790 -9295368 + L1MC5 LINE L1 7487 7851 -110 311 200 0 0 chr3 208742205 208742260 -9294898 + Tigger5 DNA MER2_type 1 55 -2268 * 312 194 14 14 chr3 208742229 208742301 -9294857 + Tigger5 DNA MER2_type 2251 2322 -1 531 193 0 0 chr3 208742319 208742407 -9294751 - Tigger5 DNA MER2_type -2235 88 1 420 195 0 23 chr3 208742420 208742507 -9294651 + Tigger5 DNA MER2_type 2239 2323 0 428 291 51 78 chr3 208742795 208743091 -9294067 - L2 LINE L2 -857 2457 2170 1516 115 0 5 chr3 208743228 208743437 -9293721 + AluSg/x SINE Alu 84 291 -19 531 298 153 22 chr3 208744074 208744302 -9292856 - MIR SINE MIR 0 262 5 189 349 12 24 chr3 208744302 208744385 -9292773 - MIR SINE MIR -160 102 21 353 269 0 59 chr3 208745976 208746095 -9291063 + L2 LINE L2 3150 3261 -11 565 328 16 10 chr3 208747762 208747954 -9289204 + MIR SINE MIR 18 210 -52 1960 139 0 10 chr3 208749048 208749350 -9287808 + AluSg SINE Alu 11 309 -1 382 298 24 16 chr3 208750108 208750232 -9286926 + L2 LINE L2 3189 3313 0 261 284 0 53 chr3 208750275 208750378 -9286780 + MIR SINE MIR 35 126 -82 344 302 72 7 chr3 208750745 208750884 -9286274 - MIR3 SINE MIR -45 163 16 295 356 40 69 chr3 208751252 208751499 -9285659 - MIR SINE MIR -16 246 7 2242 261 84 29 chr3 208751898 208752648 -9284510 - MER21B LTR ERV1 -54 809 19 245 320 13 0 chr3 208752670 208752748 -9284410 - MER21B LTR ERV1 -773 90 12 1486 212 26 55 chr3 208753667 208754125 -9283033 - MER65A LTR ERV1 0 445 1 367 324 47 40 chr3 208755560 208755614 -9281544 + MIR SINE MIR 8 60 -202 530 193 14 57 chr3 208755614 208755754 -9281404 + MER94 DNA DNA 1 134 0 367 324 47 40 chr3 208755754 208755951 -9281207 + MIR SINE MIR 60 253 -9 2415 92 3 0 chr3 208756258 208756563 -9280595 - AluSx SINE Alu -6 306 1 360 31 78 0 chr3 208756848 208756912 -9280246 + T-rich Low_complexity Low_complexity 2 70 0 22 94 0 0 chr3 208757587 208757651 -9279507 + AT_rich Low_complexity Low_complexity 1 64 0 285 323 21 0 chr3 208758503 208758599 -9278559 - MIR SINE MIR -61 147 50 308 368 104 18 chr3 208759336 208759556 -9277602 + L1ME LINE L1 5431 5669 -452 22 0 0 0 chr3 208759678 208759700 -9277458 + AT_rich Low_complexity Low_complexity 1 22 0 483 241 184 58 chr3 208760364 208760571 -9276587 + MIR SINE MIR 30 262 0 2242 116 0 6 chr3 208761385 208761696 -9275462 - AluSq SINE Alu -4 309 1 3071 248 69 48 chr3 208761734 208762961 -9274197 - L1ME LINE L1 -552 5612 4327 2017 119 7 14 chr3 208762961 208763254 -9273904 - AluSx SINE Alu -21 291 1 3071 248 69 48 chr3 208763254 208763867 -9273291 - L1ME LINE L1 -1837 4327 3728 1442 98 5 15 chr3 208763880 208764085 -9273073 - AluSq SINE Alu -11 302 100 422 264 66 66 chr3 208764097 208764301 -9272857 - L1ME LINE L1 -2420 3726 3520 2544 49 0 0 chr3 208764301 208764608 -9272550 - AluY SINE Alu -4 307 1 422 264 66 66 chr3 208764608 208764645 -9272513 - L1ME LINE L1 -2625 3521 3485 195 253 0 80 chr3 208864824 208864899 -9172259 + L2 LINE L2 525 593 -2721 582 77 10 87 chr3 208866075 208866179 -9170979 + AluSc SINE Alu 197 292 -17 192 340 0 0 chr3 208866279 208866332 -9170826 - L2 LINE L2 -16 3256 3204 1620 193 56 21 chr3 208866436 208866810 -9170348 - MLT1B LTR MaLR -1 389 3 476 282 61 12 chr3 208866878 208867041 -9170117 + MIR SINE MIR 10 180 -82 2649 123 0 24 chr3 208867291 208867747 -9169411 + HERVH LTR ERV1 2551 2995 -4718 897 133 7 0 chr3 208867726 208867876 -9169282 + HERVH LTR ERV1 3140 3290 -4423 * 3118 112 6 6 chr3 208867866 208868368 -9168790 + HERVH LTR ERV1 3492 3993 -3720 4092 143 0 1 chr3 208868370 208869033 -9168125 + HERVH LTR ERV1 4488 5149 -2564 1257 124 23 9 chr3 208869034 208869251 -9167907 + HERVH LTR ERV1 5600 5819 -1894 2358 82 45 13 chr3 208869251 208869629 -9167529 + HERVH LTR ERV1 7324 7713 0 864 76 8 15 chr3 208869629 208869761 -9167397 + LTR7 LTR ERV1 1 131 -319 303 228 0 0 chr3 208869872 208870052 -9167106 + (TA)n Simple_repeat Simple_repeat 1 180 0 267 254 236 18 chr3 208870118 208870228 -9166930 - MIR SINE MIR -50 212 79 225 315 102 24 chr3 208870879 208871006 -9166152 - MIR3 SINE MIR -11 197 61 181 248 58 66 chr3 208872249 208872370 -9164788 + L3b LINE CR1 1329 1448 -135 21 0 0 0 chr3 208872376 208872397 -9164761 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr3 208872512 208872532 -9164626 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 218 345 149 18 chr3 208872700 208872868 -9164290 - MIR SINE MIR -50 212 23 626 85 11 0 chr3 208875659 208875753 -9161405 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 25 0 0 0 chr3 208876393 208876418 -9160740 + AT_rich Low_complexity Low_complexity 1 25 0 475 107 24 0 chr3 208876600 208876684 -9160474 + GA-rich Low_complexity Low_complexity 2 87 0 198 0 0 0 chr3 208876974 208876996 -9160162 + (CGAGG)n Simple_repeat Simple_repeat 3 24 0 1876 103 26 45 chr3 208877587 208877898 -9159260 + AluSx SINE Alu 1 305 -7 434 293 90 45 chr3 208878420 208878710 -9158448 - L1 LINE L1 -2666 3480 3178 221 319 11 32 chr3 208878714 208878808 -9158350 + MIR SINE MIR 124 215 -47 985 123 19 0 chr3 208879175 208879337 -9157821 - L1MA6 LINE L1 -4 6296 6132 879 61 0 0 chr3 208879337 208879451 -9157707 + AluY SINE Alu 193 306 -5 513 194 9 0 chr3 208879451 208879559 -9157599 - L1MA6 LINE L1 -157 6143 6035 21 0 0 0 chr3 208879717 208879738 -9157420 + AT_rich Low_complexity Low_complexity 1 21 0 206 250 0 0 chr3 208880117 208880157 -9157001 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 1426 184 47 0 chr3 208880173 208880493 -9156665 - L1MC2 LINE L1 -9 6335 6001 24 53 0 0 chr3 208880771 208880809 -9156349 + AT_rich Low_complexity Low_complexity 1 38 0 328 260 136 71 chr3 208880809 208880978 -9156180 - MIR SINE MIR -62 200 21 320 304 22 0 chr3 208881889 208881981 -9155177 - L1MC4 LINE L1 -1339 6703 6610 39 68 0 0 chr3 208882311 208882385 -9154773 + AT_rich Low_complexity Low_complexity 1 74 0 21 57 0 0 chr3 208883955 208883990 -9153168 + AT_rich Low_complexity Low_complexity 1 35 0 183 162 0 0 chr3 208884163 208884200 -9152958 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 287 359 11 0 chr3 208884228 208884320 -9152838 - L2 LINE L2 -22 3250 3158 320 287 11 21 chr3 208884331 208884425 -9152733 + MIR3 SINE MIR 82 174 -34 24 0 0 0 chr3 208885191 208885215 -9151943 + AT_rich Low_complexity Low_complexity 1 24 0 392 234 84 69 chr3 208886458 208886698 -9150460 - L1MEc LINE L1 -2787 3428 3180 2539 47 3 0 chr3 208886698 208886994 -9150164 - AluY SINE Alu -14 297 1 392 234 84 69 chr3 208886994 208887073 -9150085 - L1MEc LINE L1 -3035 3180 3104 4050 15 2 0 chr3 208887235 208887702 -9149456 - L1PA3 LINE L1 0 6155 5688 5933 42 157 23 chr3 208887702 208888581 -9148577 + L1P LINE L1 19 1015 -5131 394 219 128 27 chr3 208888610 208888797 -9148361 - L1MEc LINE L1 -3274 2941 2736 2019 151 51 20 chr3 208889434 208889785 -9147373 - THE1B LTR MaLR 0 364 3 3535 102 4 10 chr3 208889788 208890286 -9146872 - THE1B-int LTR MaLR 0 1580 1086 616 155 60 17 chr3 208890388 208890504 -9146654 - THE1C LTR MaLR -254 121 1 9751 117 33 43 chr3 208890504 208892100 -9145058 - THE1B-int LTR MaLR 0 1580 2 2260 137 25 8 chr3 208892101 208892459 -9144699 - THE1B LTR MaLR 0 364 1 238 266 63 70 chr3 208893869 208894012 -9143146 + MIR SINE MIR 48 189 -73 753 171 0 14 chr3 208894284 208894424 -9142734 - L1PA15 LINE L1 -4 6161 6024 7594 29 0 0 chr3 208894432 208895433 -9141725 - L1PA4 LINE L1 0 6155 5154 373 287 40 57 chr3 208895455 208895859 -9141299 - L1MEc LINE L1 -4312 2084 1688 933 217 26 9 chr3 208895859 208896089 -9141069 + AluJo SINE Alu 1 234 -78 240 319 43 7 chr3 208896376 208896517 -9140641 - L1MEc LINE L1 -5470 926 781 1952 183 43 2 chr3 208896587 208896698 -9140460 + L1MA9 LINE L1 5666 5771 -541 360 0 0 0 chr3 208896698 208896738 -9140420 + (TG)n Simple_repeat Simple_repeat 2 41 0 1952 183 43 2 chr3 208896738 208897024 -9140134 + L1MA9 LINE L1 5771 6079 -233 539 185 19 0 chr3 208897029 208897137 -9140021 + L1MA9 LINE L1 6181 6290 -22 1441 308 53 8 chr3 208897252 208897837 -9139321 - L1MEc LINE L1 -5751 645 35 294 29 0 0 chr3 208897972 208898007 -9139151 + (TG)n Simple_repeat Simple_repeat 2 36 0 221 287 148 9 chr3 208898007 208898115 -9139043 - L2 LINE L2 -32 3281 3159 461 300 9 82 chr3 208898167 208898400 -9138758 + MIR SINE MIR 39 254 -8 23 42 0 21 chr3 208899026 208899053 -9138105 + AT_rich Low_complexity Low_complexity 1 28 -19 2209 100 0 0 chr3 208899053 208899343 -9137815 - AluY SINE Alu -21 290 1 23 42 0 21 chr3 208899343 208899363 -9137795 + AT_rich Low_complexity Low_complexity 28 47 0 1498 252 43 16 chr3 208899502 208900078 -9137080 - L1MEc LINE L1 -3875 2688 2097 25 21 0 43 chr3 208900092 208900116 -9137042 + AT_rich Low_complexity Low_complexity 1 24 -21 4467 60 39 3 chr3 208900116 208900702 -9136456 + LTR14B LTR ERVK 1 607 -1 25 21 0 43 chr3 208900702 208900724 -9136434 + AT_rich Low_complexity Low_complexity 24 45 0 360 0 0 0 chr3 208900775 208900815 -9136343 + (TG)n Simple_repeat Simple_repeat 2 41 0 385 280 33 20 chr3 208900821 208901008 -9136150 - L1MEc LINE L1 -4637 1876 1558 842 142 0 47 chr3 208901730 208901878 -9135280 + AluSc SINE Alu 142 282 -27 2232 106 0 0 chr3 208901889 208902197 -9134961 + AluSx SINE Alu 1 308 0 319 239 0 0 chr3 208902538 208902609 -9134549 + MLT1K LTR MaLR 518 588 0 2108 113 0 20 chr3 208902914 208903253 -9133905 + AluSx SINE Alu 1 312 0 447 209 78 43 chr3 208903352 208903465 -9133693 + MLT1G1 LTR MaLR 431 547 -48 542 247 89 7 chr3 208903465 208903611 -9133547 - MER20 DNA MER1_type 0 219 62 304 271 87 98 chr3 208903932 208904198 -9132960 - L1ME LINE L1 -289 5832 5570 22 35 0 0 chr3 208904318 208904347 -9132811 + AT_rich Low_complexity Low_complexity 1 29 0 183 204 0 0 chr3 208904365 208904409 -9132749 + (TG)n Simple_repeat Simple_repeat 2 45 0 600 233 58 145 chr3 208904529 208904864 -9132294 - MLT1G1 LTR MaLR -297 233 1 22 35 0 0 chr3 208905049 208905078 -9132080 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 208905258 208905279 -9131879 + AT_rich Low_complexity Low_complexity 1 21 0 252 302 134 34 chr3 208905392 208905541 -9131617 + MIR3 SINE MIR 34 197 -11 225 341 23 64 chr3 208905886 208906059 -9131099 + L2 LINE L2 2923 3088 -184 256 390 101 6 chr3 208906303 208906472 -9130686 - L3 LINE CR1 -102 1475 1291 1318 79 0 0 chr3 208906791 208906968 -9130190 - L1PA13 LINE L1 -6 6157 5981 210 344 39 26 chr3 208907965 208908119 -9129039 + MIR SINE MIR 21 176 -86 210 150 0 0 chr3 208909094 208909134 -9128024 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 1778 183 0 10 chr3 208910307 208910596 -9126562 + AluJo SINE Alu 1 286 -26 263 271 0 0 chr3 208911734 208911804 -9125354 + (TA)n Simple_repeat Simple_repeat 2 71 0 261 169 0 39 chr3 208912149 208912226 -9124932 + (TA)n Simple_repeat Simple_repeat 1 74 0 239 265 117 43 chr3 208912590 208912847 -9124311 + L1ME LINE L1 5582 5857 -264 371 325 37 12 chr3 208912986 208913149 -9124009 + L3 LINE CR1 1317 1483 -94 285 118 0 0 chr3 208914051 208914102 -9123056 + (A)n Simple_repeat Simple_repeat 1 51 0 194 325 76 68 chr3 208914105 208914354 -9122804 - L2 LINE L2 -918 2396 2146 21 0 0 0 chr3 208915056 208915077 -9122081 + AT_rich Low_complexity Low_complexity 1 21 0 353 258 84 98 chr3 208915203 208915464 -9121694 - L1M4 LINE L1 -2990 3156 2900 1831 125 18 4 chr3 208915464 208915736 -9121422 - AluSx SINE Alu -36 276 1 353 258 84 98 chr3 208915736 208915831 -9121327 - L1M4 LINE L1 -3246 2900 2805 378 364 129 26 chr3 208915928 208916540 -9120618 - L2 LINE L2 -710 2604 1930 249 119 0 0 chr3 208917507 208917549 -9119609 + (CA)n Simple_repeat Simple_repeat 1 42 0 213 384 20 0 chr3 208917638 208917737 -9119421 - MIR SINE MIR -66 142 42 30 83 0 0 chr3 208918378 208918450 -9118708 + AT_rich Low_complexity Low_complexity 1 72 0 313 284 106 7 chr3 208918744 208918885 -9118273 - MLT1K LTR MaLR -7 581 427 2545 150 21 7 chr3 208919565 208919984 -9117174 - MER61B LTR ERV1 0 425 1 246 218 69 35 chr3 208921456 208921543 -9115615 + MIR SINE MIR 64 153 -109 294 276 47 8 chr3 208923921 208924048 -9113110 - L1ME LINE L1 -264 5857 5726 1174 214 13 17 chr3 208924051 208924350 -9112808 - AluSx SINE Alu 0 312 15 2923 55 10 3 chr3 208924688 208925071 -9112087 - LTR7 LTR ERV1 -64 386 1 6355 221 27 107 chr3 208925072 208925111 -9112047 + L1PA15 LINE L1 1685 1726 -4420 1876 139 0 66 chr3 208925111 208925443 -9111715 + AluSx SINE Alu 1 310 -2 6355 221 27 107 chr3 208925443 208927361 -9109797 + L1PA15 LINE L1 1726 3263 -2883 6856 227 18 10 chr3 208927361 208929811 -9107347 + L1PA15 LINE L1 3700 6165 0 6355 221 27 107 chr3 208929811 208931167 -9105991 + L1PA15 LINE L1 3263 4726 -1420 1486 228 6 0 chr3 208931165 208931489 -9105669 + L1 LINE L1 3833 4158 -1988 * 492 225 47 0 chr3 208931481 208931610 -9105548 + L1MA4 LINE L1 6160 6294 -6 * 1638 93 0 18 chr3 208932007 208932233 -9104925 + Tigger1 DNA MER2_type 1043 1264 -1154 13481 17 2 0 chr3 208932267 208934668 -9102490 - L1PA2 LINE L1 -4 6151 3747 6745 143 19 38 chr3 208934669 208935868 -9101290 + Tigger1 DNA MER2_type 1242 2418 0 1916 217 43 16 chr3 208935929 208936676 -9100482 - L1M4 LINE L1 -575 5609 4843 * 2040 59 4 15 chr3 208936667 208936939 -9100219 + L1PA10 LINE L1 5713 5981 -187 654 286 45 43 chr3 208937075 208937582 -9099576 - L1M4 LINE L1 -1870 4276 3769 1125 275 64 14 chr3 208937691 208938316 -9098842 - L1ME3 LINE L1 -164 5998 5321 744 145 7 20 chr3 208938316 208938347 -9098811 + CT-rich Low_complexity Low_complexity 1 31 -119 870 38 0 0 chr3 208938347 208938453 -9098705 - L1PA3 LINE L1 0 6155 6050 744 145 7 20 chr3 208938453 208938573 -9098585 + CT-rich Low_complexity Low_complexity 31 150 0 1890 126 0 0 chr3 208938573 208939022 -9098136 - AluSq SINE Alu 0 313 28 508 285 87 42 chr3 208939022 208939426 -9097732 - L1ME3 LINE L1 -830 5316 4895 235 235 51 10 chr3 208939873 208939971 -9097187 + (CATATA)n Simple_repeat Simple_repeat 3 104 0 23 0 0 0 chr3 208941930 208941953 -9095205 + AT_rich Low_complexity Low_complexity 1 23 0 251 361 98 27 chr3 208941969 208942152 -9095006 + MIR SINE MIR 49 244 -18 1311 225 3 66 chr3 208943269 208943380 -9093778 + AluJo SINE Alu 1 117 -195 1839 96 4 0 chr3 208943380 208943641 -9093517 + L1PA7 LINE L1 5893 6154 0 1311 225 3 66 chr3 208943641 208943862 -9093296 + AluJo SINE Alu 117 312 0 198 0 0 0 chr3 208944120 208944142 -9093016 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 221 311 146 0 chr3 208945465 208945568 -9091590 - L2 LINE L2 -214 3058 2941 492 250 97 19 chr3 208946058 208946274 -9090884 - MER106A DNA MER1_type 0 236 4 608 96 0 11 chr3 208946318 208946412 -9090746 + (TTCC)n Simple_repeat Simple_repeat 2 94 0 3290 53 0 0 chr3 208946884 208947299 -9089859 - L1P LINE L1 -2390 3756 3342 7327 48 0 0 chr3 208947299 208948302 -9088856 + L1PA5 LINE L1 5151 6153 -1 282 322 158 6 chr3 208948767 208948944 -9088214 + MIR SINE MIR 48 251 -11 366 42 0 0 chr3 208950073 208950121 -9087037 + (TC)n Simple_repeat Simple_repeat 1 48 0 5245 280 36 27 chr3 208951300 208954653 -9082505 + MER66B-int LTR ERV1 3288 6676 0 1906 212 46 35 chr3 208954653 208955134 -9082024 + MER66B LTR ERV1 1 486 0 1957 224 13 0 chr3 208955139 208955589 -9081569 + L1PA16 LINE L1 3234 3689 -2457 4926 191 16 14 chr3 208955597 208956278 -9080880 + L1PA16 LINE L1 4399 5077 -1089 1979 145 135 11 chr3 208956278 208956657 -9080501 - MSTA LTR MaLR -2 426 1 8683 158 8 47 chr3 208956657 208957759 -9079399 - MSTA-int LTR MaLR 0 1580 562 213 39 0 0 chr3 208957759 208957785 -9079373 + (TTG)n Simple_repeat Simple_repeat 2 27 0 8683 158 8 47 chr3 208957785 208958326 -9078832 - MSTA-int LTR MaLR -1018 562 1 2052 146 122 8 chr3 208958326 208958710 -9078448 - MSTA LTR MaLR 0 428 1 4926 191 16 14 chr3 208958710 208958742 -9078416 + L1PA16 LINE L1 5077 5107 -1059 8492 56 7 8 chr3 208958742 208959815 -9077343 - MER11C LTR ERVK 0 1071 1 4926 191 16 14 chr3 208959815 208960102 -9077056 + L1PA16 LINE L1 5107 5392 -774 2102 135 0 0 chr3 208960102 208960399 -9076759 + AluSg SINE Alu 1 297 -13 4926 191 16 14 chr3 208960399 208961162 -9075996 + L1PA16 LINE L1 5392 6166 0 386 281 75 36 chr3 208961174 208961412 -9075746 - L1ME3A LINE L1 -336 5834 5592 1700 245 24 81 chr3 208961909 208962492 -9074666 + MLT1F1 LTR MaLR 5 554 -13 534 299 116 59 chr3 208962521 208963575 -9073583 - L1ME3A LINE L1 -801 5345 4232 1403 230 21 3 chr3 208964255 208964546 -9072612 + AluJo SINE Alu 1 296 -16 216 0 0 0 chr3 208964717 208964741 -9072417 + (TTA)n Simple_repeat Simple_repeat 1 24 0 1756 141 17 14 chr3 208964770 208965061 -9072097 + L1MA3 LINE L1 5977 6268 -37 1695 174 84 14 chr3 208965063 208965407 -9071751 - THE1C LTR MaLR -7 368 1 10055 128 32 8 chr3 208965407 208966951 -9070207 - THE1C-int LTR MaLR 0 1580 1 328 193 0 0 chr3 208966951 208967008 -9070150 - THE1C LTR MaLR 0 428 372 1925 65 11 4 chr3 208967116 208967376 -9069782 + L1P3 LINE L1 1422 1683 -4778 * 2597 241 44 9 chr3 208967371 208968104 -9069054 + L1MD2 LINE L1 5582 6339 -20 1736 162 19 25 chr3 208968111 208968425 -9068733 - AluSx SINE Alu 0 312 1 446 168 21 0 chr3 208968556 208968651 -9068507 + L1MA8 LINE L1 6191 6287 -4 4755 179 21 21 chr3 208968698 208970110 -9067048 + L1PA16 LINE L1 4740 6150 -16 23 33 0 0 chr3 208970707 208970737 -9066421 + AT_rich Low_complexity Low_complexity 1 30 0 372 314 142 10 chr3 208970742 208970946 -9066212 - MIR SINE MIR -13 249 19 21 36 0 0 chr3 208971015 208971043 -9066115 + AT_rich Low_complexity Low_complexity 1 28 0 782 289 101 10 chr3 208971043 208971431 -9065727 - L1ME3 LINE L1 -6 6156 5734 251 141 31 153 chr3 208971444 208971575 -9065583 + L1MA9 LINE L1 6199 6327 -7 392 312 243 5 chr3 208971664 208971866 -9065292 - MIR SINE MIR -10 252 3 444 335 113 4 chr3 208971908 208972138 -9065020 - MIR SINE MIR -3 259 5 1534 170 13 56 chr3 208972503 208972809 -9064349 - AluSx SINE Alu -19 293 1 544 53 11 95 chr3 208972840 208972960 -9064198 - L1PA6 LINE L1 0 6154 6068 2086 122 7 3 chr3 208973444 208973739 -9063419 + AluSx SINE Alu 1 296 -16 1041 203 5 50 chr3 208973883 208974105 -9063053 + AluJo SINE Alu 70 281 -31 3928 231 19 19 chr3 208974273 208975261 -9061897 + L1PA13 LINE L1 1280 2267 -4520 2192 107 10 0 chr3 208975453 208975751 -9061407 + AluSx SINE Alu 1 301 -11 469 188 12 0 chr3 208975808 208975893 -9061265 - MSTA LTR MaLR -6 422 337 314 157 0 0 chr3 208975893 208975944 -9061214 + MSTA LTR MaLR 378 428 0 27 81 0 0 chr3 208976772 208976834 -9060324 + AT_rich Low_complexity Low_complexity 1 62 0 256 236 32 122 chr3 208977375 208977498 -9059660 + L1MC/D LINE L1 5447 5558 -2250 22 35 0 0 chr3 208978077 208978106 -9059052 + AT_rich Low_complexity Low_complexity 1 29 0 477 305 47 16 chr3 208978366 208978556 -9058602 + MIR SINE MIR 66 261 -1 400 267 136 52 chr3 208979162 208979413 -9057745 - L1MC5 LINE L1 -50 7911 7640 21 0 0 0 chr3 208979781 208979802 -9057356 + AT_rich Low_complexity Low_complexity 1 21 0 206 297 0 62 chr3 208980501 208980565 -9056593 + L3b LINE CR1 1519 1578 -5 751 171 0 0 chr3 208980678 208980807 -9056351 - AluSp/q SINE Alu -10 303 175 5250 170 14 6 chr3 208981142 208982117 -9055041 - L1P LINE L1 -1474 4672 3690 23 54 0 0 chr3 208982608 208982645 -9054513 + AT_rich Low_complexity Low_complexity 1 37 0 192 297 69 69 chr3 208983180 208983281 -9053877 + MIR SINE MIR 2 102 -160 526 297 104 18 chr3 208983283 208983643 -9053515 - LTR16A LTR ERVL -14 436 18 194 0 39 0 chr3 208983777 208983803 -9053355 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2162 84 3 18 chr3 208983814 208984098 -9053060 - AluY SINE Alu -30 281 2 368 80 0 18 chr3 208984052 208984110 -9053048 - Alu SINE Alu -255 47 2 559 310 54 30 chr3 208984383 208984770 -9052388 - ERVL LTR ERVL -647 5117 4666 329 313 80 0 chr3 208985025 208985183 -9051975 - ERVL LTR ERVL -1117 4404 4199 1970 129 58 30 chr3 208985464 208985829 -9051329 - THE1C LTR MaLR 0 375 1 513 96 12 12 chr3 208985829 208985912 -9051246 - THE1C-int LTR MaLR 0 1580 1498 2173 73 19 60 chr3 208987035 208987352 -9049806 - AluY SINE Alu -7 304 1 736 80 0 54 chr3 208987809 208987965 -9049193 + AluY SINE Alu 177 326 0 2050 125 10 3 chr3 208990217 208990522 -9046636 + AluSq SINE Alu 1 307 -6 304 337 66 31 chr3 208992504 208992700 -9044458 + MIR SINE MIR 4 206 -56 918 129 0 0 chr3 208993493 208993633 -9043525 - L1PA13 LINE L1 -11 6152 6013 280 277 20 40 chr3 208993862 208993963 -9043195 + L2 LINE L2 3151 3249 -64 316 67 0 0 chr3 208994261 208994306 -9042852 + MADE1 DNA Mariner 34 78 -2 276 200 0 0 chr3 208995272 208995332 -9041826 + GA-rich Low_complexity Low_complexity 5 64 0 614 313 24 20 chr3 208995393 208995642 -9041516 - MIR SINE MIR 0 262 13 1229 225 57 17 chr3 208995948 208996246 -9040912 - AluJo SINE Alu -2 310 1 1543 196 33 54 chr3 208996877 208997305 -9039853 - L1 LINE L1 -2379 5186 4768 429 119 0 0 chr3 208997305 208997364 -9039794 + Tigger2 DNA MER2_type 1 59 -2659 2378 171 25 23 chr3 208997370 208997810 -9039348 + Tigger2 DNA MER2_type 2278 2718 0 460 143 0 0 chr3 208997837 208997907 -9039251 - FAM SINE Alu -12 173 104 772 261 120 23 chr3 208997948 208998247 -9038911 + L1M3e LINE L1 1515 1842 -5188 1040 210 6 0 chr3 208998263 208998444 -9038714 - 7SLRNA srpRNA srpRNA -81 239 58 1036 163 5 35 chr3 208998444 208998647 -9038511 + Tigger1 DNA MER2_type 2222 2418 0 1076 258 54 3 chr3 208998647 208999000 -9038158 - L1 LINE L1 -4543 3022 2652 1454 268 46 38 chr3 208999014 208999752 -9037406 - L1MEc LINE L1 -1973 4242 3499 373 269 54 0 chr3 208999752 208999845 -9037313 + MLT1E1 LTR MaLR 1 98 -556 653 161 18 0 chr3 208999886 208999998 -9037160 - AluSq/x SINE Alu -188 124 11 1002 257 201 7 chr3 209000101 209000510 -9036648 + MLT1E1 LTR MaLR 165 652 -2 943 302 63 21 chr3 209000512 209001227 -9035931 - L1MEc LINE L1 -2712 3503 2759 228 309 99 37 chr3 209001446 209001608 -9035550 + L1MCc LINE L1 264 435 -5988 1817 268 58 26 chr3 209001914 209002755 -9034403 + L1MCc LINE L1 832 1700 -4890 1106 204 131 36 chr3 209002855 209003130 -9034028 + AluJo SINE Alu 2 302 0 531 262 64 55 chr3 209003200 209003645 -9033513 + L1MCc LINE L1 1936 2474 -4467 540 227 30 94 chr3 209003646 209003849 -9033309 - MLT1D LTR MaLR -136 369 180 315 299 155 11 chr3 209004005 209004192 -9032966 - L1MEc LINE L1 -3452 2763 2550 1233 286 99 58 chr3 209004203 209004987 -9032171 - L1MEc LINE L1 -3873 2523 1772 2051 113 10 19 chr3 209004987 209005297 -9031861 - AluSc SINE Alu -2 307 1 1233 286 99 58 chr3 209005297 209005510 -9031648 - L1MEc LINE L1 -4624 1772 1569 5410 237 38 17 chr3 209005510 209005794 -9031364 + Tigger3b DNA MER2_type 2 279 -2749 2029 124 7 0 chr3 209005794 209006084 -9031074 - AluY SINE Alu -19 292 1 5410 237 38 17 chr3 209006084 209006135 -9031023 + Tigger3b DNA MER2_type 279 327 -2701 441 0 0 0 chr3 209006135 209006184 -9030974 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 5410 237 38 17 chr3 209006184 209007052 -9030106 + Tigger3b DNA MER2_type 327 1231 0 1233 286 99 58 chr3 209007052 209007719 -9029439 - L1MEc LINE L1 -4827 1569 790 445 65 22 87 chr3 209007744 209007929 -9029229 + (TA)n Simple_repeat Simple_repeat 1 173 0 383 296 142 0 chr3 209009364 209009537 -9027621 + MIR SINE MIR 11 206 -56 2145 31 8 0 chr3 209013249 209013506 -9023652 - AluYa5 SINE Alu -8 303 45 1422 171 99 16 chr3 209013506 209013810 -9023348 - THE1C LTR MaLR -46 329 1 260 0 0 0 chr3 209013811 209013845 -9023313 + L1MA1 LINE L1 6268 6301 -1 23 0 0 0 chr3 209013964 209013987 -9023171 + AT_rich Low_complexity Low_complexity 1 23 0 32 86 0 0 chr3 209014250 209014331 -9022827 + AT_rich Low_complexity Low_complexity 1 81 0 885 278 75 0 chr3 209014497 209014724 -9022434 + MIR SINE MIR 16 259 -3 14827 152 38 14 chr3 209014945 209017599 -9019559 - Tigger2 DNA MER2_type 0 2718 1 21 0 0 0 chr3 209017875 209017896 -9019262 + AT_rich Low_complexity Low_complexity 1 21 0 2082 264 60 2 chr3 209019149 209019665 -9017493 - MLT1F1 LTR MaLR -21 546 1 21 57 0 0 chr3 209019682 209019717 -9017441 + AT_rich Low_complexity Low_complexity 1 35 0 1323 335 64 16 chr3 209020020 209020873 -9016285 + ERVL LTR ERVL 3989 4874 -611 381 361 37 43 chr3 209021128 209021427 -9015731 + LTR16A LTR ERVL 25 321 -129 199 171 49 12 chr3 209021741 209021823 -9015335 + (TA)n Simple_repeat Simple_repeat 1 85 0 223 174 0 0 chr3 209022211 209022257 -9014901 + T-rich Low_complexity Low_complexity 3 48 0 233 265 59 0 chr3 209022555 209022623 -9014535 - MIR SINE MIR -101 161 90 2007 248 42 19 chr3 209023729 209024354 -9012804 - L1ME1 LINE L1 -5 6161 5523 290 223 45 9 chr3 209024361 209024473 -9012685 - L1ME1 LINE L1 -2234 3912 3797 359 192 117 17 chr3 209024478 209024599 -9012559 - L1 LINE L1 -2420 3726 3594 1575 148 39 24 chr3 209024697 209024877 -9012281 - L1MA5 LINE L1 -5 6295 6106 2363 191 14 0 chr3 209024877 209025297 -9011861 + MSTB LTR MaLR 1 426 0 1575 148 39 24 chr3 209025297 209025447 -9011711 - L1MA5 LINE L1 -194 6106 5960 4902 116 29 4 chr3 209025722 209026448 -9010710 - THE1B-int LTR MaLR -836 744 1 2026 140 60 20 chr3 209026448 209026798 -9010360 - THE1B LTR MaLR 0 364 1 548 358 67 24 chr3 209026805 209027179 -9009979 + MLT1I LTR MaLR 6 395 -14 22 43 0 21 chr3 209027313 209027338 -9009820 + AT_rich Low_complexity Low_complexity 1 26 -20 1385 201 26 52 chr3 209027338 209027647 -9009511 - AluJo SINE Alu -11 301 1 22 43 0 21 chr3 209027647 209027668 -9009490 + AT_rich Low_complexity Low_complexity 26 46 0 807 199 0 82 chr3 209028938 209029134 -9008024 + MER20 DNA MER1_type 40 219 0 457 250 61 27 chr3 209029212 209029360 -9007798 - HERV16 LTR ERVL -4843 153 1 1302 308 21 19 chr3 209029361 209029783 -9007375 - LTR16A LTR ERVL -1 449 27 186 43 0 0 chr3 209030123 209030146 -9007012 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1332 237 79 47 chr3 209030146 209030433 -9006725 + MER90 LTR ERV1 7 283 -292 210 37 0 0 chr3 209030433 209030460 -9006698 + (TC)n Simple_repeat Simple_repeat 2 28 0 1332 237 79 47 chr3 209030460 209030720 -9006438 + MER90 LTR ERV1 283 575 0 378 342 62 60 chr3 209030959 209031427 -9005731 - L2 LINE L2 0 3272 2804 224 204 61 0 chr3 209032719 209032768 -9004390 + L3b LINE CR1 1532 1583 0 252 280 102 38 chr3 209033545 209033702 -9003456 - LTR67 LTR ERVL -4 553 387 252 198 74 37 chr3 209034135 209034216 -9002942 - MLT1K LTR MaLR -6 582 499 228 234 0 0 chr3 209034266 209034313 -9002845 + GA-rich Low_complexity Low_complexity 2 48 0 367 293 64 14 chr3 209034349 209034489 -9002669 - MLT1L LTR MaLR -389 226 80 21 0 0 0 chr3 209034944 209034965 -9002193 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr3 209035136 209035168 -9001990 + AT_rich Low_complexity Low_complexity 1 32 0 1902 114 4 0 chr3 209035174 209035429 -9001729 - AluSc SINE Alu -39 270 15 251 287 16 123 chr3 209035463 209035585 -9001573 - L2 LINE L2 0 3313 3205 250 359 17 0 chr3 209035745 209035862 -9001296 + L2 LINE L2 3195 3313 0 24 53 0 0 chr3 209036586 209036624 -9000534 + AT_rich Low_complexity Low_complexity 1 38 0 3637 113 77 17 chr3 209036762 209037402 -8999756 - L1MA3 LINE L1 -2 6303 5626 326 364 29 7 chr3 209038237 209038377 -8998781 + L2 LINE L2 2949 3091 -181 200 297 68 14 chr3 209038677 209038751 -8998407 - L2 LINE L2 -42 3230 3153 22 0 0 0 chr3 209038886 209038908 -8998250 + AT_rich Low_complexity Low_complexity 1 22 0 420 250 54 138 chr3 209040238 209040462 -8996696 - MIR SINE MIR -46 216 12 222 333 67 50 chr3 209041158 209041278 -8995880 + MIR SINE MIR 3 124 -138 325 275 28 18 chr3 209041944 209042053 -8995105 - MER103 DNA DNA -55 111 2 1579 240 126 6 chr3 209042128 209042486 -8994672 - MLT1F1 LTR MaLR -162 405 5 2110 147 25 14 chr3 209042540 209042900 -8994258 - THE1B LTR MaLR 0 364 1 9745 116 32 64 chr3 209042900 209044533 -8992625 - THE1B-int LTR MaLR 0 1580 1 2076 129 21 63 chr3 209044533 209044913 -8992245 - THE1B LTR MaLR 0 364 1 2187 150 67 12 chr3 209046776 209047182 -8989976 - MSTA LTR MaLR 0 428 1 5814 196 16 7 chr3 209047182 209048239 -8988919 - MSTA-int LTR MaLR 0 1651 585 8888 184 10 6 chr3 209048742 209050476 -8986682 - L1PB1 LINE L1 0 6867 5113 194 0 39 0 chr3 209050476 209050502 -8986656 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 8888 184 10 6 chr3 209050502 209051491 -8985667 - L1PB1 LINE L1 -1754 5113 4130 7449 176 22 18 chr3 209051498 209053425 -8983733 - L1PB1 LINE L1 -3545 3317 1332 3682 173 43 10 chr3 209053417 209054138 -8983020 - MSTA-int LTR MaLR -902 749 5 * 229 264 66 137 chr3 209054142 209054369 -8982789 - MSTA LTR MaLR 0 428 218 24 0 0 0 chr3 209054528 209054552 -8982606 + AT_rich Low_complexity Low_complexity 1 24 0 1863 175 45 14 chr3 209054552 209054907 -8982251 - MSTA LTR MaLR -62 366 1 437 298 60 6 chr3 209054910 209055078 -8982080 - MIR SINE MIR -65 197 21 1922 143 67 14 chr3 209055390 209055746 -8981412 + THE1C LTR MaLR 1 375 0 214 250 0 0 chr3 209056016 209056084 -8981074 + (TATAA)n Simple_repeat Simple_repeat 5 72 0 28 48 0 0 chr3 209057015 209057057 -8980101 + AT_rich Low_complexity Low_complexity 1 42 0 201 154 0 0 chr3 209058017 209058056 -8979102 + A-rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr3 209058359 209058380 -8978778 + AT_rich Low_complexity Low_complexity 1 21 0 1268 154 30 0 chr3 209058837 209059070 -8978088 - L1MA2 LINE L1 -20 6284 6045 27 29 0 0 chr3 209059070 209059104 -8978054 + AT_rich Low_complexity Low_complexity 1 34 0 25 51 0 0 chr3 209059267 209059306 -8977852 + AT_rich Low_complexity Low_complexity 1 39 0 314 263 97 63 chr3 209059948 209060123 -8977035 - MIR3 SINE MIR -11 197 17 1618 123 38 0 chr3 209061168 209061403 -8975755 - AluSx SINE Alu -68 244 1 1394 231 23 23 chr3 209062384 209062730 -8974428 - LTR31 LTR ERV1 -200 419 74 333 0 0 0 chr3 209063141 209063178 -8973980 + (CA)n Simple_repeat Simple_repeat 2 38 0 27 73 0 0 chr3 209063200 209063255 -8973903 + AT_rich Low_complexity Low_complexity 1 55 0 590 227 33 0 chr3 209063654 209063804 -8973354 + L1M4 LINE L1 3416 3570 -2576 19090 214 26 26 chr3 209063819 209068400 -8968758 + L1PA11 LINE L1 7 5137 -2447 318 26 0 0 chr3 209068400 209068439 -8968719 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 19090 214 26 26 chr3 209068439 209069721 -8967437 + L1PA11 LINE L1 5137 6418 -1166 5542 127 13 1 chr3 209069821 209070663 -8966495 + L1PA11 LINE L1 6757 7608 -4 304 272 18 9 chr3 209070676 209070790 -8966368 + L1M4 LINE L1 3588 3702 -2444 22 70 0 0 chr3 209071346 209071389 -8965769 + AT_rich Low_complexity Low_complexity 1 43 0 225 280 84 49 chr3 209071673 209071816 -8965342 - L2 LINE L2 -882 2432 2285 14553 177 28 8 chr3 209073102 209077567 -8959591 - L1M1 LINE L1 -745 6820 2349 3487 262 82 37 chr3 209077659 209079588 -8957570 + L1ME1 LINE L1 2611 4626 -1520 1252 37 87 0 chr3 209079621 209079782 -8957376 + AluY SINE Alu 120 294 -17 1087 218 64 17 chr3 209079784 209080082 -8957076 + L1ME1 LINE L1 5850 6161 -5 22 56 0 0 chr3 209080594 209080630 -8956528 + AT_rich Low_complexity Low_complexity 1 36 0 825 122 17 0 chr3 209080940 209081055 -8956103 - FLAM_C SINE Alu -16 127 11 2089 92 0 4 chr3 209082200 209082493 -8954665 - AluSx SINE Alu 0 304 13 323 286 66 0 chr3 209082542 209082633 -8954525 - MIR SINE MIR -137 125 29 242 221 73 15 chr3 209082755 209082823 -8954335 + MIR SINE MIR 186 257 -5 23 0 0 0 chr3 209082823 209082846 -8954312 + AT_rich Low_complexity Low_complexity 1 23 0 248 290 50 50 chr3 209083239 209083339 -8953819 - MIR SINE MIR -7 255 156 292 143 0 0 chr3 209083360 209083409 -8953749 - MER94 DNA DNA -83 51 3 333 339 43 0 chr3 209084011 209084126 -8953032 + L2 LINE L2 3153 3272 0 2009 142 23 0 chr3 209085759 209086061 -8951097 - AluSq SINE Alu -2 311 3 225 0 0 0 chr3 209086067 209086092 -8951066 + (T)n Simple_repeat Simple_repeat 1 25 0 1423 205 60 10 chr3 209086104 209086406 -8950752 + L1M4b LINE L1 855 1171 -5688 233 57 0 0 chr3 209086406 209086441 -8950717 + Alu SINE Alu 264 298 -2 1054 232 16 20 chr3 209086442 209086692 -8950466 + L1M4b LINE L1 1159 1407 -5452 1560 290 54 34 chr3 209086712 209087529 -8949629 + L1M4b LINE L1 1540 2372 -4587 306 289 113 31 chr3 209087740 209087934 -8949224 + L1M4b LINE L1 2476 2685 -4453 2130 119 3 6 chr3 209088590 209088902 -8948256 + AluSx SINE Alu 1 311 -1 536 239 90 18 chr3 209089952 209090119 -8947039 - MIR3 SINE MIR 0 208 30 2158 84 30 3 chr3 209090337 209090455 -8946703 + AluSc SINE Alu 4 117 -242 344 39 0 39 chr3 209090455 209090506 -8946652 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 2158 84 30 3 chr3 209090506 209090735 -8946423 + AluSc SINE Alu 117 359 0 2013 113 0 0 chr3 209093223 209093516 -8943642 + L1PA13 LINE L1 5867 6159 -4 2086 103 0 45 chr3 209093550 209093860 -8943298 + AluSq SINE Alu 1 296 -17 234 125 0 0 chr3 209093863 209093911 -8943247 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 189 0 0 0 chr3 209094841 209094862 -8942296 + (A)n Simple_repeat Simple_repeat 1 21 0 2082 117 0 32 chr3 209095748 209096057 -8941101 - AluSx SINE Alu -13 299 1 369 208 21 97 chr3 209096231 209096375 -8940783 - MLT1B LTR MaLR -257 133 1 358 357 63 0 chr3 209096375 209096501 -8940657 - LTR16C LTR ERVL -251 240 107 306 0 0 0 chr3 209097130 209097164 -8939994 + (TC)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr3 209099527 209099548 -8937610 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chr3 209099601 209099631 -8937527 + AT_rich Low_complexity Low_complexity 1 30 0 1610 262 56 25 chr3 209099951 209100466 -8936692 + L1MC/D LINE L1 9 539 -5870 2617 211 36 64 chr3 209100677 209101659 -8935499 + L1MC/D LINE L1 659 1611 -4795 1260 221 41 43 chr3 209101661 209102367 -8934791 + L1MC/D LINE L1 2124 2826 -3580 1260 286 122 9 chr3 209102367 209103119 -8934039 + L1MC/D LINE L1 3385 4221 -2185 685 187 39 55 chr3 209103122 209103304 -8933854 + L1MC/D LINE L1 4277 4455 -1951 258 325 13 0 chr3 209103305 209103382 -8933776 + GA-rich Low_complexity Low_complexity 2 79 0 338 293 26 47 chr3 209103382 209103573 -8933585 + L1MC/D LINE L1 4406 4592 -1814 789 152 6 61 chr3 209103573 209103738 -8933420 + AluJo SINE Alu 113 268 -44 219 88 0 0 chr3 209103756 209103790 -8933368 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 228 223 45 36 chr3 209103801 209103913 -8933245 + L1MC/D LINE L1 4623 4735 -1671 1951 229 37 36 chr3 209103915 209104746 -8932412 + L1MC/D LINE L1 4822 5731 -771 5200 110 4 12 chr3 209104746 209105500 -8931658 + L1P3 LINE L1 147 894 -5567 364 305 119 37 chr3 209105612 209105702 -8931456 + L1ME LINE L1 4564 4645 -1501 2123 128 0 0 chr3 209105702 209105991 -8931167 + AluSg SINE Alu 1 289 -21 364 305 119 37 chr3 209105991 209106471 -8930687 + L1ME LINE L1 4645 5181 -965 39081 73 23 2 chr3 209106475 209112500 -8924658 - L1PA5 LINE L1 0 6154 3 464 285 32 65 chr3 209112602 209112911 -8924247 + L1ME LINE L1 5294 5592 -578 1817 156 46 39 chr3 209113065 209113476 -8923682 - L1MA7 LINE L1 -84 6207 5794 257 333 78 26 chr3 209113934 209114071 -8923087 - HERVL LTR ERVL -2339 3315 3164 3272 109 8 0 chr3 209114071 209114559 -8922599 - L1PB2 LINE L1 -2 6149 5658 257 333 78 26 chr3 209114559 209114613 -8922545 - HERVL LTR ERVL -2490 3164 3114 515 115 0 35 chr3 209114619 209114706 -8922452 - MLT1A1 LTR MaLR -281 84 1 271 189 19 0 chr3 209114742 209114795 -8922363 - HERVL LTR ERVL -2093 2903 2850 351 62 15 31 chr3 209114837 209114902 -8922256 + (TA)n Simple_repeat Simple_repeat 2 65 0 1021 325 55 36 chr3 209115043 209115603 -8921555 - HERVL LTR ERVL -2979 2785 2215 1911 286 106 24 chr3 209118047 209118774 -8918384 - L2 LINE L2 -5 3308 2465 356 213 0 0 chr3 209118774 209118854 -8918304 - MER116 DNA Mariner 0 80 1 1911 286 106 24 chr3 209118854 209119173 -8917985 - L2 LINE L2 -848 2465 2174 577 242 37 25 chr3 209119238 209119399 -8917759 + MIR SINE MIR 48 210 -52 732 220 74 47 chr3 209119399 209119658 -8917500 + MLT1A1 LTR MaLR 1 275 -121 313 122 20 0 chr3 209119779 209119828 -8917330 + MLT1A1 LTR MaLR 408 457 0 182 253 96 60 chr3 209120219 209120302 -8916856 - L2 LINE L2 -10 3262 3177 490 303 94 21 chr3 209120303 209120537 -8916621 + MIR SINE MIR 2 252 -10 1525 241 37 67 chr3 209120929 209121465 -8915693 + MLT2B1 LTR ERVL 1 520 0 499 313 0 0 chr3 209121622 209121750 -8915408 + MLT1L LTR MaLR 104 231 -384 12927 262 14 6 chr3 209121752 209122475 -8914683 - HERVL LTR ERVL -1416 4348 3632 1131 151 225 77 chr3 209122475 209122800 -8914358 - THE1C LTR MaLR -2 373 1 12927 262 14 6 chr3 209122800 209125891 -8911267 - HERVL LTR ERVL -2132 3632 269 550 252 177 46 chr3 209126001 209126043 -8911115 + MLT1L LTR MaLR 305 340 -171 2248 118 0 3 chr3 209126043 209126349 -8910809 - AluSq SINE Alu -8 305 1 550 252 177 46 chr3 209126349 209126580 -8910578 + MLT1L LTR MaLR 340 511 0 184 368 40 0 chr3 209127724 209127800 -8909358 - L2 LINE L2 -5 3308 3230 292 331 151 6 chr3 209128140 209128312 -8908846 - L2 LINE L2 -1912 1402 1206 279 300 73 0 chr3 209128314 209128424 -8908734 + MLT1D LTR MaLR 1 118 -387 2790 39 0 0 chr3 209128514 209128852 -8908306 - L1PA4 LINE L1 0 6155 5818 736 290 74 34 chr3 209128853 209129232 -8907926 + MLT1D LTR MaLR 112 505 0 412 379 82 0 chr3 209129235 209129478 -8907680 - L2 LINE L2 -2127 1187 925 748 192 23 0 chr3 209130131 209130261 -8906897 - Tigger7 DNA MER2_type 0 2487 2355 3344 201 20 5 chr3 209130288 209130930 -8906228 - Tigger7 DNA MER2_type -81 652 1 26 0 0 0 chr3 209131607 209131633 -8905525 + AT_rich Low_complexity Low_complexity 1 26 0 218 161 18 18 chr3 209132005 209132061 -8905097 + (TTAAA)n Simple_repeat Simple_repeat 3 58 0 370 297 198 6 chr3 209132118 209132300 -8904858 - MIR SINE MIR 0 262 46 195 260 39 39 chr3 209133446 209133523 -8903635 + MIR3 SINE MIR 126 202 -6 251 282 273 10 chr3 209134566 209134775 -8902383 - L3 LINE CR1 -199 1378 1115 354 215 13 0 chr3 209135131 209135210 -8901948 - MIR3 SINE MIR -38 170 91 615 193 0 76 chr3 209135733 209135904 -8901254 + L1MA9 LINE L1 5772 5929 -383 324 241 12 0 chr3 209136189 209136272 -8900886 + MIR3 SINE MIR 91 174 -34 1841 179 21 8 chr3 209136350 209136724 -8900434 + L1MA9 LINE L1 5933 6311 -1 336 231 132 114 chr3 209136726 209137190 -8899968 - MLT1H1 LTR MaLR -44 511 40 216 97 0 0 chr3 209137201 209137232 -8899926 + (CA)n Simple_repeat Simple_repeat 2 32 0 28 48 0 0 chr3 209137661 209137703 -8899455 + AT_rich Low_complexity Low_complexity 1 42 0 290 352 60 20 chr3 209138171 209138370 -8898788 - L1ME LINE L1 -521 5600 5394 201 213 0 0 chr3 209138439 209138486 -8898672 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 232 294 0 22 chr3 209138489 209138581 -8898577 + L1MC4 LINE L1 6614 6703 -1339 385 216 0 55 chr3 209138581 209138762 -8898396 + (CATATA)n Simple_repeat Simple_repeat 4 174 0 2087 115 13 25 chr3 209139376 209139690 -8897468 - AluSx SINE Alu -2 310 1 192 280 0 20 chr3 209140038 209140088 -8897070 + L2 LINE L2 3224 3272 0 278 346 0 31 chr3 209140279 209140406 -8896752 + MIR3 SINE MIR 85 207 -1 300 157 100 29 chr3 209141749 209141819 -8895339 - MER5C DNA MER1_type -248 76 2 670 298 88 23 chr3 209141819 209142314 -8894844 + MER115 DNA AcHobo 51 683 -10 1651 197 0 3 chr3 209142362 209142657 -8894501 + AluJo SINE Alu 1 294 -18 278 357 111 16 chr3 209143181 209143307 -8893851 + L2 LINE L2 3134 3271 -1 21 36 0 0 chr3 209144645 209144673 -8892485 + AT_rich Low_complexity Low_complexity 1 28 0 215 364 16 0 chr3 209144682 209144803 -8892355 - MIR SINE MIR -2 260 138 2044 109 0 0 chr3 209144824 209145098 -8892060 - AluSq SINE Alu -39 274 1 23 33 0 0 chr3 209145359 209145389 -8891769 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr3 209146167 209146192 -8890966 + AT_rich Low_complexity Low_complexity 1 25 0 186 340 47 9 chr3 209147189 209147295 -8889863 - L2 LINE L2 -37 3235 3126 1575 142 110 0 chr3 209148611 209148892 -8888266 + AluSx SINE Alu 1 312 0 920 238 50 21 chr3 209148976 209149257 -8887901 - L1ME3 LINE L1 -1 6161 5873 44 35 0 0 chr3 209149349 209149407 -8887751 + AT_rich Low_complexity Low_complexity 1 58 0 1263 317 37 4 chr3 209149467 209149927 -8887231 - HERVL40 LTR ERVL -860 4670 4196 865 202 56 0 chr3 209149929 209150104 -8887054 - MER31A LTR ERV1 -1 484 300 1625 184 50 37 chr3 209150104 209150495 -8886663 - MSTA LTR MaLR 0 428 1 521 172 16 167 chr3 209150496 209150607 -8886551 - MER31A LTR ERV1 -182 303 231 5187 67 30 0 chr3 209150607 209151308 -8885850 - LTR30 LTR ERV1 0 722 1 521 172 16 167 chr3 209151308 209151388 -8885770 - MER31A LTR ERV1 -254 231 141 365 213 0 0 chr3 209151440 209151501 -8885657 + MER2 DNA MER2_type 285 345 0 553 311 52 24 chr3 209151521 209151978 -8885180 + L1M4 LINE L1 2374 2843 -3303 231 324 9 0 chr3 209152023 209152131 -8885027 + L1M4 LINE L1 3533 3641 -2505 1657 200 40 3 chr3 209152144 209152469 -8884689 + MSTB LTR MaLR 1 337 -89 788 230 6 0 chr3 209152470 209152648 -8884510 + MST-int LTR MaLR 515 693 -958 468 187 42 15 chr3 209152648 209152772 -8884386 + MSTB1 LTR MaLR 292 426 -6 7964 188 26 35 chr3 209152778 209154443 -8882715 + MSTB-int LTR MaLR 1 1651 0 2154 189 29 7 chr3 209154443 209154860 -8882298 + MSTB LTR MaLR 1 426 0 304 329 35 7 chr3 209154910 209155053 -8882105 + L1M2 LINE L1 3633 3779 -2367 2376 25 0 3 chr3 209155957 209156240 -8880918 + L1PA2 LINE L1 5870 6151 -4 704 152 8 0 chr3 209157670 209157802 -8879356 + (CA)n Simple_repeat Simple_repeat 1 133 0 198 177 32 16 chr3 209158292 209158354 -8878804 + (TA)n Simple_repeat Simple_repeat 1 63 0 412 216 45 0 chr3 209158357 209158445 -8878713 - L1MC4 LINE L1 -1339 6703 6612 1344 199 8 0 chr3 209158817 209159058 -8878100 + AluJo SINE Alu 40 282 -30 445 321 42 21 chr3 209159090 209159330 -8877828 + L1M4c LINE L1 1612 1856 -4528 784 239 46 34 chr3 209159361 209159782 -8877376 + L1M4c LINE L1 1984 2415 -3967 6980 209 8 7 chr3 209159785 209161554 -8875604 + L1M2 LINE L1 3770 5538 -743 236 213 100 0 chr3 209161586 209161666 -8875492 - L1MC4 LINE L1 -1340 6702 6615 396 190 0 0 chr3 209161710 209161789 -8875369 + (TATATG)n Simple_repeat Simple_repeat 2 80 0 297 0 0 0 chr3 209161789 209161822 -8875336 + (CA)n Simple_repeat Simple_repeat 2 34 0 1089 289 90 30 chr3 209161845 209162312 -8874846 + LTR33 LTR ERVL 27 521 0 27 29 0 0 chr3 209162536 209162570 -8874588 + AT_rich Low_complexity Low_complexity 1 34 0 302 231 132 33 chr3 209163351 209163442 -8873716 - L2 LINE L2 0 3272 3173 231 270 0 0 chr3 209163982 209164045 -8873113 + L1ME3A LINE L1 6103 6165 -5 181 263 70 0 chr3 209164067 209164124 -8873034 - L2 LINE L2 -22 3291 3231 43 20 0 0 chr3 209164235 209164285 -8872873 + AT_rich Low_complexity Low_complexity 1 50 0 211 337 23 12 chr3 209164622 209164708 -8872450 + L2 LINE L2 3186 3272 0 1120 205 8 30 chr3 209165381 209165615 -8871543 + MIR SINE MIR 13 241 -21 792 277 35 9 chr3 209167167 209167398 -8869760 - MIR SINE MIR -21 241 5 196 325 77 34 chr3 209167520 209167637 -8869521 - L2 LINE L2 -36 3236 3115 2081 138 0 0 chr3 209168164 209168468 -8868690 - AluSx SINE Alu -8 304 1 1978 147 0 3 chr3 209168505 209168826 -8868332 - AluSx SINE Alu 0 320 1 189 107 0 0 chr3 209168927 209168955 -8868203 + (TTG)n Simple_repeat Simple_repeat 2 29 0 756 289 208 6 chr3 209169002 209169334 -8867824 + MLT1G1 LTR MaLR 1 399 -196 681 244 39 77 chr3 209169507 209169741 -8867417 - MIR SINE MIR -1 261 37 281 347 36 31 chr3 209169860 209170056 -8867102 + LTR16B LTR ERVL 6 202 -262 310 283 115 9 chr3 209170086 209170199 -8866959 + LTR16A LTR ERVL 319 443 -7 10092 73 18 10 chr3 209170277 209171627 -8865531 - SVA Other Other 0 1386 27 205 234 21 0 chr3 209172102 209172149 -8865009 + G-rich Low_complexity Low_complexity 4 51 0 43 71 0 0 chr3 209172276 209172361 -8864797 + AT_rich Low_complexity Low_complexity 1 85 0 1221 343 51 25 chr3 209173206 209173856 -8863302 - HERV16 LTR ERVL -3803 1193 527 889 324 46 8 chr3 209173903 209174274 -8862884 - HERV16 LTR ERVL -4595 401 17 22 0 0 0 chr3 209175187 209175209 -8861949 + AT_rich Low_complexity Low_complexity 1 22 0 472 257 114 24 chr3 209175315 209175525 -8861633 + L1ME3 LINE L1 5934 6162 0 249 218 90 13 chr3 209175907 209175985 -8861173 - L1MEd LINE L1 -6032 87 4 302 295 0 0 chr3 209176211 209176289 -8860869 + GA-rich Low_complexity Low_complexity 2 79 0 304 186 51 0 chr3 209177151 209177210 -8859948 + L1MB3 LINE L1 5423 5484 -694 363 192 0 0 chr3 209177210 209177283 -8859875 + (TA)n Simple_repeat Simple_repeat 2 74 0 3547 158 30 35 chr3 209177283 209177928 -8859230 + L1MB3 LINE L1 5489 6132 -51 2174 97 27 3 chr3 209177928 209178226 -8858932 - AluSc SINE Alu 0 309 5 3547 158 30 35 chr3 209178226 209178276 -8858882 + L1MB3 LINE L1 6132 6181 -2 1608 177 10 30 chr3 209179768 209180073 -8857085 - AluJb SINE Alu -13 299 1 250 337 43 0 chr3 209181053 209181145 -8856013 - L2 LINE L2 -9 3304 3209 333 357 75 46 chr3 209181215 209181349 -8855809 - L2 LINE L2 -125 3188 3059 1377 189 111 24 chr3 209181349 209181683 -8855475 + MLT1A1 LTR MaLR 1 363 -2 333 357 75 46 chr3 209181683 209181921 -8855237 - L2 LINE L2 -254 3059 2805 2352 60 10 0 chr3 209181999 209182301 -8854857 - AluY SINE Alu -6 305 1 3401 309 109 49 chr3 209182758 209183116 -8854042 - L2 LINE L2 0 3313 2978 2618 36 7 0 chr3 209183116 209183421 -8853737 + AluSp SINE Alu 1 307 -6 3401 309 109 49 chr3 209183421 209183439 -8853719 - L2 LINE L2 -335 2978 2963 1549 92 180 4 chr3 209183439 209183689 -8853469 + AluSg1 SINE Alu 1 294 -15 3401 309 109 49 chr3 209183689 209184204 -8852954 - L2 LINE L2 -350 2963 2480 1431 250 16 19 chr3 209184204 209184576 -8852582 - MLT1A2 LTR MaLR 0 374 4 3401 309 109 49 chr3 209184576 209185745 -8851413 - L2 LINE L2 -833 2480 1091 245 261 34 68 chr3 209186788 209186876 -8850282 - MIR3 SINE MIR -43 165 81 1634 237 19 3 chr3 209187209 209187568 -8849590 - MLT1A1 LTR MaLR 0 365 1 186 167 0 0 chr3 209187750 209187786 -8849372 + (TA)n Simple_repeat Simple_repeat 2 37 0 217 217 17 17 chr3 209187808 209187868 -8849290 + (TA)n Simple_repeat Simple_repeat 2 61 0 187 350 0 25 chr3 209188594 209188674 -8848484 - L2 LINE L2 -1 3271 3194 523 372 50 38 chr3 209188844 209189323 -8847835 + L2 LINE L2 2491 2975 -339 275 372 61 0 chr3 209190917 209191081 -8846077 - MIR3 SINE MIR -3 205 32 2097 48 18 15 chr3 209191085 209191260 -8845898 - AluY SINE Alu -5 306 128 207 0 0 0 chr3 209191260 209191283 -8845875 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2097 48 18 15 chr3 209191283 209191380 -8845778 - AluY SINE Alu -183 128 33 5016 110 20 1 chr3 209191926 209192683 -8844475 - L1PA13 LINE L1 -4 6159 5389 * 13136 180 23 67 chr3 209192669 209193248 -8843910 - L1PA13 LINE L1 -980 5166 4563 2150 103 0 10 chr3 209193248 209193580 -8843578 + AluSq SINE Alu 4 332 0 13136 180 23 67 chr3 209193580 209193847 -8843311 - L1PA13 LINE L1 -1583 4563 4286 317 44 0 0 chr3 209193847 209193892 -8843266 + AluY SINE Alu 255 299 -1 13136 180 23 67 chr3 209193892 209193979 -8843179 - L1PA13 LINE L1 -1860 4286 4197 577 128 0 0 chr3 209193979 209194073 -8843085 - AluSg/x SINE Alu -8 304 211 13136 180 23 67 chr3 209194073 209196158 -8841000 - L1PA13 LINE L1 -1949 4197 2144 497 205 9 9 chr3 209196157 209196269 -8840889 + L1P LINE L1 1581 1692 -4454 * 189 74 0 0 chr3 209196337 209196364 -8840794 + (TAAAAA)n Simple_repeat Simple_repeat 6 32 0 328 268 12 12 chr3 209196451 209196533 -8840625 - MIR SINE MIR -66 142 61 2214 119 3 0 chr3 209196929 209197240 -8839918 - AluSx SINE Alu 0 312 1 25 51 0 0 chr3 209197470 209197509 -8839649 + AT_rich Low_complexity Low_complexity 1 39 0 374 275 58 24 chr3 209197632 209197839 -8839319 + L1M4 LINE L1 4490 4703 -1443 752 288 64 9 chr3 209197991 209198224 -8838934 + MIR SINE MIR 16 261 -1 3239 247 39 93 chr3 209198234 209198910 -8838248 - L1M4 LINE L1 -2182 5383 4672 955 126 0 0 chr3 209198910 209199053 -8838105 - AluSg/x SINE Alu -1 311 169 3239 247 39 93 chr3 209199053 209199320 -8837838 - L1M4 LINE L1 -2893 4672 4392 2180 129 0 0 chr3 209199320 209199630 -8837528 - AluSq SINE Alu -3 310 1 3239 247 39 93 chr3 209199630 209201614 -8835544 - L1M4 LINE L1 -3173 4392 2534 * 4474 271 75 12 chr3 209201599 209202905 -8834253 - L1M3c LINE L1 -4743 1398 11 1425 118 3 81 chr3 209203443 209203739 -8833419 - HSMAR2 DNA Mariner -1 1301 1029 3154 121 18 8 chr3 209203747 209204244 -8832914 - HSMAR2 DNA Mariner -799 503 2 756 323 91 22 chr3 209204438 209204899 -8832259 - LTR33 LTR ERVL -28 493 1 189 356 140 15 chr3 209205802 209206066 -8831092 + L2 LINE L2 2213 2509 -805 841 247 18 0 chr3 209206073 209206243 -8830915 - LTR16A LTR ERVL -6 444 272 295 377 86 14 chr3 209206410 209206781 -8830377 + L2 LINE L2 2495 2892 -422 1207 283 81 33 chr3 209207388 209207869 -8829289 - MLT1D LTR MaLR 0 505 2 34 84 0 0 chr3 209207901 209207984 -8829174 + AT_rich Low_complexity Low_complexity 1 83 0 210 212 0 30 chr3 209208002 209208068 -8829090 + (TA)n Simple_repeat Simple_repeat 2 65 0 28 86 0 0 chr3 209208161 209208231 -8828927 + AT_rich Low_complexity Low_complexity 1 70 0 2167 127 0 0 chr3 209208308 209208607 -8828551 - AluSx SINE Alu -13 299 1 557 124 10 0 chr3 209208795 209208892 -8828266 + (TAGA)n Simple_repeat Simple_repeat 4 101 0 295 272 98 39 chr3 209209499 209209753 -8827405 + L1ME3A LINE L1 1107 1375 -5009 848 296 102 63 chr3 209209924 209210610 -8826548 + L1ME3A LINE L1 1728 2440 -4123 516 290 98 34 chr3 209210664 209211105 -8826053 + L1ME3A LINE L1 2481 2949 -3433 1228 256 107 50 chr3 209211143 209211683 -8825475 + L1ME3A LINE L1 5816 6386 -20 222 171 0 0 chr3 209211712 209211753 -8825405 + (TA)n Simple_repeat Simple_repeat 1 41 0 1874 181 31 3 chr3 209211762 209212115 -8825043 - MER47A DNA MER2_type -1 365 3 342 0 0 0 chr3 209212115 209212153 -8825005 + (TG)n Simple_repeat Simple_repeat 1 38 0 1348 161 108 53 chr3 209212182 209212524 -8824634 + MER46B DNA MER2_type 1 236 0 414 50 0 230 chr3 209213044 209213144 -8824014 + MADE1 DNA Mariner 2 78 -2 23 0 0 0 chr3 209213171 209213194 -8823964 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr3 209213381 209213418 -8823740 + AT_rich Low_complexity Low_complexity 1 37 0 761 228 104 10 chr3 209213447 209213649 -8823509 + MER58A DNA MER1_type 1 221 -3 22 0 0 0 chr3 209213748 209213770 -8823388 + AT_rich Low_complexity Low_complexity 1 22 0 265 234 86 20 chr3 209213835 209214004 -8823154 - LTR50 LTR ERVL 0 795 593 280 250 67 83 chr3 209214299 209214479 -8822679 - LTR41 LTR ERVL -596 177 1 24 32 0 0 chr3 209214702 209214733 -8822425 + AT_rich Low_complexity Low_complexity 1 31 0 215 336 76 25 chr3 209215640 209215759 -8821399 + L2 LINE L2 3136 3260 -12 256 357 66 59 chr3 209217029 209217301 -8819857 + L2 LINE L2 2993 3266 -6 2514 36 7 13 chr3 209218127 209218436 -8818722 - AluY SINE Alu -4 307 1 4260 125 12 0 chr3 209219293 209219943 -8817215 - L1PA15 LINE L1 0 6165 5508 608 319 50 12 chr3 209221436 209221677 -8815481 + MIR SINE MIR 13 262 0 241 314 42 42 chr3 209223236 209223354 -8813804 - MIR3 SINE MIR -9 199 82 22 56 0 0 chr3 209223725 209223761 -8813397 + AT_rich Low_complexity Low_complexity 1 36 0 375 336 20 7 chr3 209224022 209224168 -8812990 + MIR SINE MIR 105 252 -10 267 103 0 0 chr3 209224168 209224207 -8812951 + (CA)n Simple_repeat Simple_repeat 2 40 0 2479 107 0 17 chr3 209224208 209224563 -8812595 - THE1C LTR MaLR -26 349 1 197 351 49 68 chr3 209224702 209224907 -8812251 + L3 LINE CR1 1330 1530 -47 2608 48 0 7 chr3 209224918 209225228 -8811930 + AluY SINE Alu 1 308 -3 5585 135 4 5 chr3 209225447 209226275 -8810883 + THE1C-int LTR MaLR 754 1580 0 2358 104 7 79 chr3 209226275 209226679 -8810479 + THE1C LTR MaLR 1 375 0 363 294 29 52 chr3 209226681 209226817 -8810341 - L3 LINE CR1 -512 1065 933 288 301 228 36 chr3 209227306 209227525 -8809633 + MIR SINE MIR 1 261 -1 246 244 203 24 chr3 209227737 209227860 -8809298 + L2 LINE L2 3160 3304 -9 573 186 80 102 chr3 209229035 209229309 -8807849 + L1ME1 LINE L1 101 368 -6055 418 291 63 12 chr3 209229402 209229656 -8807502 + L1ME1 LINE L1 1650 1916 -5025 371 312 53 24 chr3 209229684 209229854 -8807304 + L1ME1 LINE L1 2188 2362 -4579 890 271 61 32 chr3 209230018 209231020 -8806138 + L1ME1 LINE L1 2619 3717 -3224 1886 133 14 7 chr3 209231020 209231319 -8805839 + AluSx SINE Alu 1 301 0 890 271 61 32 chr3 209231319 209231411 -8805747 + L1ME1 LINE L1 3717 3805 -3136 1477 164 157 10 chr3 209231413 209231712 -8805446 - MSTA LTR MaLR 0 428 86 3844 70 168 46 chr3 209231712 209232325 -8804833 + LTR12 LTR ERV1 1 688 0 34096 83 26 8 chr3 209232325 209234811 -8802347 + HERV17 LTR ERV1 40 2481 -4457 2411 89 0 10 chr3 209234811 209235125 -8802033 - AluY SINE Alu 0 311 1 34096 83 26 8 chr3 209235125 209237469 -8799689 + HERV17 LTR ERV1 2481 4944 -1994 1818 97 40 35 chr3 209237470 209238040 -8799118 + HERV17 LTR ERV1 704 1403 -7223 3974 98 2 2 chr3 209238040 209238582 -8798576 + HERV17 LTR ERV1 7854 8395 -4 5191 79 3 34 chr3 209238586 209239296 -8797862 + LTR12 LTR ERV1 1 688 0 690 69 0 0 chr3 209239298 209239385 -8797773 - MSTA LTR MaLR -341 87 1 2773 242 73 74 chr3 209239385 209240881 -8796277 + L1ME1 LINE L1 3803 5298 -1643 1725 139 92 4 chr3 209240881 209241154 -8796004 + AluSx SINE Alu 1 297 -15 2773 242 73 74 chr3 209241154 209241368 -8795790 + L1ME1 LINE L1 5298 5511 -1430 * 2940 222 68 39 chr3 209241345 209242087 -8795071 + L1ME1 LINE L1 5831 6550 -579 1534 150 41 69 chr3 209242087 209242407 -8794751 + AluSx SINE Alu 1 311 -1 2940 222 68 39 chr3 209242407 209242457 -8794701 + L1ME1 LINE L1 6550 6597 -532 2391 96 0 3 chr3 209242457 209242769 -8794389 + AluSx SINE Alu 2 312 0 2940 222 68 39 chr3 209242769 209243083 -8794075 + L1ME1 LINE L1 6597 7129 0 328 159 16 16 chr3 209243504 209243567 -8793591 + LTR33 LTR ERVL 459 521 0 364 331 14 40 chr3 209244574 209244722 -8792436 + MIR3 SINE MIR 3 146 -62 266 186 34 17 chr3 209245386 209245445 -8791713 + GA-rich Low_complexity Low_complexity 2 61 0 238 361 67 25 chr3 209247188 209247307 -8789851 + MIR3 SINE MIR 8 131 -77 29 0 0 0 chr3 209247424 209247453 -8789705 + AT_rich Low_complexity Low_complexity 1 29 0 289 261 90 18 chr3 209247651 209247762 -8789396 + MIR3 SINE MIR 90 208 0 21 0 0 0 chr3 209247800 209247821 -8789337 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr3 209248123 209248153 -8789005 + AT_rich Low_complexity Low_complexity 1 30 0 278 322 154 0 chr3 209248204 209248353 -8788805 - MIR SINE MIR 0 262 91 241 297 44 55 chr3 209248708 209248799 -8788359 + L2 LINE L2 3140 3229 -43 212 319 33 22 chr3 209249430 209249521 -8787637 + MIR SINE MIR 74 165 -97 356 250 135 10 chr3 209249555 209249659 -8787499 - L2 LINE L2 0 3272 3156 304 310 0 11 chr3 209250079 209250166 -8786992 + MIR SINE MIR 20 105 -103 2245 84 0 7 chr3 209250215 209250524 -8786634 - AluSq SINE Alu 0 307 1 24 67 0 0 chr3 209251262 209251307 -8785851 + AT_rich Low_complexity Low_complexity 1 45 0 186 43 0 0 chr3 209251778 209251801 -8785357 + (TA)n Simple_repeat Simple_repeat 1 23 0 30 0 0 0 chr3 209252000 209252030 -8785128 + AT_rich Low_complexity Low_complexity 1 30 0 2251 93 3 7 chr3 209252237 209252538 -8784620 + AluSq SINE Alu 1 300 -13 430 229 115 13 chr3 209252570 209252727 -8784431 + MER104 DNA Tc2 1 173 -7 289 292 154 8 chr3 209252956 209253086 -8784072 - MIR3 SINE MIR -23 185 37 259 194 15 30 chr3 209254019 209254086 -8783072 + MER103 DNA DNA 26 91 -75 2178 116 3 3 chr3 209255210 209255513 -8781645 + AluSq SINE Alu 1 303 -10 1616 128 115 17 chr3 209256294 209256625 -8780533 - MSTA LTR MaLR 0 428 51 296 324 93 28 chr3 209256841 209257023 -8780135 - MIR SINE MIR -61 201 8 319 286 100 49 chr3 209257701 209258208 -8778950 - L1ME LINE L1 -378 5792 5257 28 79 0 0 chr3 209258280 209258343 -8778815 + AT_rich Low_complexity Low_complexity 1 63 0 258 128 48 24 chr3 209259045 209259170 -8777988 + (TA)n Simple_repeat Simple_repeat 2 129 0 2570 77 0 0 chr3 209259193 209259503 -8777655 - AluSg SINE Alu 0 310 1 1542 122 46 0 chr3 209260557 209260794 -8776364 + AluSx SINE Alu 58 305 -7 1871 128 58 76 chr3 209261037 209261088 -8776070 - THE1C LTR MaLR 0 375 325 1741 149 14 7 chr3 209261088 209261364 -8775794 + AluSx SINE Alu 24 301 -11 1871 128 58 76 chr3 209261364 209261694 -8775464 - THE1C LTR MaLR -50 325 1 2108 102 7 3 chr3 209261694 209261999 -8775159 - THE1C-int LTR MaLR 0 1580 1275 586 264 65 50 chr3 209262175 209262425 -8774733 - Charlie4a DNA MER1_type -1453 508 248 2312 96 0 6 chr3 209262425 209262738 -8774420 + AluSx SINE Alu 1 311 -1 586 264 65 50 chr3 209262738 209262885 -8774273 - Charlie4a DNA MER1_type -1713 248 105 21 0 0 0 chr3 209262885 209262906 -8774252 + AT_rich Low_complexity Low_complexity 1 21 0 394 179 0 0 chr3 209262911 209262978 -8774180 - Alu SINE Alu -2 298 232 1993 113 0 45 chr3 209262979 209263289 -8773869 - AluSq SINE Alu -15 298 3 314 196 62 62 chr3 209263293 209263405 -8773753 - Charlie4a DNA MER1_type -396 112 1 1024 128 0 0 chr3 209263801 209263950 -8773208 - AluSx SINE Alu 0 310 162 515 151 0 0 chr3 209263950 209264023 -8773135 - AluSx SINE Alu -236 77 5 2071 126 7 0 chr3 209264088 209264382 -8772776 + AluSp SINE Alu 1 296 -17 525 314 111 62 chr3 209264577 209264791 -8772367 - LTR33 LTR ERVL -7 514 312 2232 110 0 0 chr3 209264791 209265090 -8772068 + AluSx SINE Alu 1 299 -13 525 314 111 62 chr3 209265090 209265363 -8771795 - LTR33 LTR ERVL -209 312 3 2402 85 42 45 chr3 209265952 209266330 -8770828 + MER51B LTR ERV1 1 377 0 918 203 57 106 chr3 209266723 209267212 -8769946 + MER4C LTR ERV1 1 465 0 1584 167 33 10 chr3 209267509 209267809 -8769349 + MER50 LTR ERV1 19 325 -409 1413 158 21 0 chr3 209267814 209268055 -8769103 + MER50 LTR ERV1 452 697 -37 318 188 205 18 chr3 209268201 209268313 -8768845 + LTR34 LTR ERV1 382 514 -185 2745 161 16 54 chr3 209268489 209269065 -8768093 + MER41C LTR ERV1 1 554 0 1846 230 77 31 chr3 209270569 209271086 -8766072 - MLT1F LTR MaLR -1 541 1 2337 67 6 16 chr3 209271234 209271547 -8765611 - AluY SINE Alu -1 310 1 251 237 134 10 chr3 209271806 209271903 -8765255 + L1ME3A LINE L1 2727 2835 -3311 637 298 57 21 chr3 209271906 209272329 -8764829 + L1ME3A LINE L1 3608 4045 -2101 447 230 99 25 chr3 209272381 209272542 -8764616 + L1ME3A LINE L1 4478 4650 -1496 534 252 8 0 chr3 209272629 209272756 -8764402 - FLAM_A SINE Alu -5 128 1 1532 261 68 13 chr3 209272756 209273589 -8763569 + L1ME3A LINE L1 4980 5885 -285 927 91 126 30 chr3 209273618 209273817 -8763341 - L1MA9 LINE L1 -5 6307 6090 243 75 0 25 chr3 209273861 209273901 -8763257 - L1MA9 LINE L1 -206 6106 6068 305 243 86 50 chr3 209274091 209274231 -8762927 + L1ME3A LINE L1 6026 6170 0 230 68 51 17 chr3 209274640 209274699 -8762459 + (TA)n Simple_repeat Simple_repeat 2 62 0 43 71 0 0 chr3 209274811 209274896 -8762262 + AT_rich Low_complexity Low_complexity 1 85 0 255 309 86 0 chr3 209275282 209275363 -8761795 + L2 LINE L2 3192 3279 -34 222 327 39 29 chr3 209275436 209275540 -8761618 - MIR SINE MIR -86 176 72 2469 81 0 3 chr3 209275847 209276156 -8761002 + AluSq SINE Alu 1 308 -5 374 206 31 9 chr3 209276281 209276374 -8760784 - MLT1D LTR MaLR -174 480 356 2231 119 3 0 chr3 209276387 209276697 -8760461 + AluSx SINE Alu 1 311 -1 612 217 0 0 chr3 209276700 209276843 -8760315 + GA-rich Low_complexity Low_complexity 2 144 0 821 217 76 62 chr3 209276843 209277147 -8760011 - MLT1D LTR MaLR -196 309 2 21 0 0 0 chr3 209277315 209277336 -8759822 + AT_rich Low_complexity Low_complexity 1 21 0 320 300 0 11 chr3 209277706 209277796 -8759362 + L2 LINE L2 3173 3261 -11 2080 108 0 0 chr3 209277919 209278197 -8758961 - AluSx SINE Alu -34 278 1 7889 127 11 41 chr3 209278346 209279649 -8757509 - THE1C-int LTR MaLR -317 1263 1 1815 169 32 27 chr3 209279649 209280022 -8757136 - THE1C LTR MaLR 0 375 1 207 184 0 0 chr3 209280887 209280925 -8756233 + T-rich Low_complexity Low_complexity 3 40 0 2105 127 0 3 chr3 209281001 209281292 -8755866 + AluSq SINE Alu 1 290 -23 320 285 152 19 chr3 209282062 209282220 -8754938 + MIR SINE MIR 34 212 -50 22 35 0 0 chr3 209282522 209282551 -8754607 + AT_rich Low_complexity Low_complexity 1 29 0 182 321 0 0 chr3 209283028 209283084 -8754074 - L2 LINE L2 -32 3240 3185 953 129 0 13 chr3 209283159 209283314 -8753844 + L1M1 LINE L1 5507 5659 -643 24 0 0 0 chr3 209283481 209283505 -8753653 + AT_rich Low_complexity Low_complexity 1 24 0 2438 133 3 8 chr3 209283576 209283944 -8753214 + THE1C LTR MaLR 1 366 -9 8952 122 108 3 chr3 209283944 209285366 -8751792 + THE1C-int LTR MaLR 9 1580 0 2270 113 39 14 chr3 209285368 209285662 -8751496 + THE1C LTR MaLR 3 309 -66 209 29 0 57 chr3 209285662 209285697 -8751461 + (TTAAA)n Simple_repeat Simple_repeat 3 35 0 2270 113 39 14 chr3 209285697 209285764 -8751394 + THE1C LTR MaLR 309 373 -2 235 299 11 11 chr3 209285905 209285992 -8751166 + HAL1b LINE L1 526 612 -736 203 152 0 43 chr3 209286356 209286402 -8750756 + A-rich Low_complexity Low_complexity 6 49 0 2141 122 7 0 chr3 209286757 209287060 -8750098 + AluSp SINE Alu 2 305 -8 316 323 18 4 chr3 209287126 209287352 -8749806 + L1MC3 LINE L1 2602 2830 -3316 495 295 82 73 chr3 209287554 209288187 -8748971 + L1MC3 LINE L1 3052 3690 -2456 2596 167 13 0 chr3 209288189 209288639 -8748519 + L1PA16 LINE L1 5695 6150 -16 23 92 0 0 chr3 209288639 209288704 -8748454 + AT_rich Low_complexity Low_complexity 1 65 0 613 308 3 11 chr3 209288774 209289060 -8748098 + L1MC3 LINE L1 3715 3998 -2148 808 320 112 33 chr3 209289111 209290232 -8746926 + L1MC3 LINE L1 4502 5263 -883 27 0 0 0 chr3 209290234 209290261 -8746897 + AT_rich Low_complexity Low_complexity 1 27 0 325 246 8 25 chr3 209290342 209290460 -8746698 - L1MC5 LINE L1 -1208 6753 6638 540 199 19 77 chr3 209290773 209290929 -8746229 - L1MC5 LINE L1 -1051 6910 6764 295 231 128 26 chr3 209291305 209291461 -8745697 + L1MC5 LINE L1 6978 7149 -812 1301 196 94 73 chr3 209291470 209292045 -8745113 + L1MC5 LINE L1 7094 7680 -281 306 257 81 7 chr3 209292101 209292237 -8744921 + L1MC5 LINE L1 7772 7917 -44 1962 123 0 7 chr3 209292444 209292765 -8744393 + AluSx SINE Alu 1 319 0 2254 102 3 3 chr3 209292945 209293249 -8743909 + AluSc SINE Alu 1 304 -5 36 0 0 0 chr3 209294110 209294146 -8743012 + AT_rich Low_complexity Low_complexity 1 36 0 765 234 0 0 chr3 209294931 209295076 -8742082 - FRAM SINE Alu -31 145 1 370 240 52 21 chr3 209295995 209296091 -8741067 + MIR SINE MIR 19 117 -145 1748 142 0 0 chr3 209296704 209296985 -8740173 + L1PA13 LINE L1 5883 6163 0 24 32 0 0 chr3 209297068 209297099 -8740059 + AT_rich Low_complexity Low_complexity 1 31 0 226 345 7 21 chr3 209297274 209297416 -8739742 + CT-rich Low_complexity Low_complexity 1 140 0 1994 196 29 50 chr3 209298007 209298115 -8739043 + L1MC3 LINE L1 5723 5832 -1953 180 0 0 0 chr3 209298115 209298135 -8739023 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 273 29 0 0 chr3 209298134 209298168 -8738990 + (CA)n Simple_repeat Simple_repeat 1 34 0 1994 196 29 50 chr3 209298135 209298615 -8738543 + L1MC3 LINE L1 5832 6266 -1519 501 179 0 19 chr3 209298607 209298713 -8738445 + L1MC3 LINE L1 6490 6593 -1192 * 27 0 0 0 chr3 209298998 209299025 -8738133 + AT_rich Low_complexity Low_complexity 1 27 0 1831 129 26 7 chr3 209299275 209299546 -8737612 - AluSx SINE Alu -14 298 23 1964 129 0 19 chr3 209299761 209300079 -8737079 - AluYb8 SINE Alu -6 312 1 1300 138 12 16 chr3 209301002 209301248 -8735910 - LTR1 LTR ERV1 -540 245 1 884 178 9 19 chr3 209301249 209301462 -8735696 - L1 LINE L1 -2396 3750 3540 280 301 54 0 chr3 209303594 209303687 -8733471 - MIR SINE MIR -84 178 81 35 0 0 0 chr3 209304369 209304404 -8732754 + AT_rich Low_complexity Low_complexity 1 35 0 705 167 9 0 chr3 209304404 209304550 -8732608 + FLAM_C SINE Alu 2 148 0 214 398 29 0 chr3 209304552 209304655 -8732503 - L2 LINE L2 -789 2525 2420 293 324 108 11 chr3 209306073 209306251 -8730907 - MIR SINE MIR -2 260 65 614 333 83 0 chr3 209306251 209306491 -8730667 + MIR SINE MIR 1 260 -2 7029 103 26 0 chr3 209308759 209309776 -8727382 - MER52-int LTR ERV1 -1886 5205 4163 1006 114 0 7 chr3 209309877 209310017 -8727141 - AluJo SINE Alu -173 139 1 1095 243 34 55 chr3 209310145 209310622 -8726536 + MLT1C LTR MaLR 1 467 0 325 219 14 0 chr3 209311610 209311683 -8725475 - MER20 DNA MER1_type -145 74 1 236 167 21 0 chr3 209312034 209312082 -8725076 + MER20 DNA MER1_type 134 182 -37 2337 91 0 0 chr3 209313912 209314239 -8722919 + AluY SINE Alu 1 311 0 285 271 136 8 chr3 209314728 209314846 -8722312 - L2 LINE L2 -8 3264 3132 219 299 97 7 chr3 209315284 209315438 -8721720 + MIR SINE MIR 81 248 -14 1035 232 35 74 chr3 209316846 209317266 -8719892 + MER72 LTR ERV1 4 388 -283 261 75 0 0 chr3 209317926 209317966 -8719192 + (TG)n Simple_repeat Simple_repeat 1 40 0 180 0 0 0 chr3 209317965 209317985 -8719173 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 192 344 31 0 chr3 209318169 209318233 -8718925 - L2 LINE L2 -333 2939 2874 2309 100 7 0 chr3 209319596 209319896 -8717262 + AluSc SINE Alu 1 302 -7 180 234 43 0 chr3 209319903 209319950 -8717208 + L3 LINE CR1 1231 1279 -298 205 330 64 21 chr3 209319984 209320078 -8717080 + L3 LINE CR1 1456 1553 -24 2002 170 8 14 chr3 209321349 209321714 -8715444 + MLT1A1 LTR MaLR 1 363 -2 320 357 32 13 chr3 209322535 209322692 -8714466 + MIR3 SINE MIR 36 195 -13 262 317 87 0 chr3 209323514 209323618 -8713540 - MIR SINE MIR -73 135 23 781 231 22 60 chr3 209323860 209324128 -8713030 - MIR SINE MIR 0 262 5 292 223 53 21 chr3 209324161 209324255 -8712903 - L1ME4a LINE L1 -30 6091 5995 831 149 32 19 chr3 209324465 209324619 -8712539 - MER51B LTR ERV1 -96 281 126 204 97 0 0 chr3 209325487 209325518 -8711640 + (TG)n Simple_repeat Simple_repeat 2 32 0 247 362 58 14 chr3 209326374 209326512 -8710646 + L3b LINE CR1 1437 1580 -3 196 355 47 98 chr3 209326968 209327264 -8709894 + L2 LINE L2 2992 3272 0 221 350 77 0 chr3 209327409 209327526 -8709632 + MIR SINE MIR 56 181 -81 367 305 8 46 chr3 209328088 209328219 -8708939 - MIR3 SINE MIR -38 170 56 213 372 31 16 chr3 209328339 209328468 -8708690 - L3 LINE CR1 -87 1490 1360 381 75 0 0 chr3 209328740 209328793 -8708365 + (CAT)n Simple_repeat Simple_repeat 2 54 0 2079 144 0 0 chr3 209330243 209330541 -8706617 - AluJb SINE Alu -14 298 1 456 244 6 105 chr3 209330629 209330801 -8706357 + L1MEd LINE L1 1065 1219 -4900 1395 210 4 12 chr3 209331233 209331490 -8705668 + AluJo SINE Alu 1 255 -57 230 167 0 0 chr3 209331556 209331598 -8705560 + L1ME3A LINE L1 6035 6076 -94 413 192 296 8 chr3 209332350 209332475 -8704683 + MIR SINE MIR 81 241 -21 233 357 51 0 chr3 209333369 209333467 -8703691 - MIR SINE MIR -19 243 141 504 286 115 30 chr3 209333487 209333721 -8703437 + MIR SINE MIR 9 262 0 192 331 86 22 chr3 209333703 209333842 -8703316 - MIR SINE MIR -101 161 14 * 2164 105 0 23 chr3 209334629 209334933 -8702225 - AluSc SINE Alu -12 297 1 243 371 64 29 chr3 209335507 209335647 -8701511 - MIR3 SINE MIR -46 162 18 2055 170 118 27 chr3 209335944 209336463 -8700695 - LTR49 LTR ERV1 -29 566 1 6228 122 32 27 chr3 209336464 209337569 -8699589 - LTR49-int LTR ERV1 -1 6330 5221 2194 144 0 24 chr3 209337569 209337910 -8699248 - MER1B DNA MER1_type 0 339 7 12720 170 91 67 chr3 209337917 209339468 -8697690 - LTR49-int LTR ERV1 -1109 5222 3709 1772 181 0 13 chr3 209339468 209339778 -8697380 + AluJb SINE Alu 1 306 -6 12720 170 91 67 chr3 209339778 209340995 -8696163 - LTR49-int LTR ERV1 -2622 3709 2361 1771 90 0 0 chr3 209340995 209341240 -8695918 + L1PA8 LINE L1 5928 6172 0 12720 170 91 67 chr3 209341240 209341766 -8695392 - LTR49-int LTR ERV1 -3970 2361 1849 1816 134 7 34 chr3 209341769 209342067 -8695091 - AluSg SINE Alu -18 292 3 477 156 94 10 chr3 209342067 209342163 -8694995 - LTR49-int LTR ERV1 -4795 1536 1433 273 319 0 0 chr3 209342216 209342288 -8694870 - tRNA-Glu-GAG tRNA tRNA -1 74 3 5247 159 91 40 chr3 209342314 209342418 -8694740 - LTR49-int LTR ERV1 -5161 1170 1073 2197 104 13 0 chr3 209342418 209342717 -8694441 - AluSc SINE Alu -6 303 1 5247 159 91 40 chr3 209342717 209343725 -8693433 - LTR49-int LTR ERV1 -5258 1073 1 2200 122 195 30 chr3 209343728 209344236 -8692922 - LTR49 LTR ERV1 -3 592 1 2136 97 30 10 chr3 209344502 209344800 -8692358 + AluSx SINE Alu 1 304 -8 21 0 0 0 chr3 209345179 209345200 -8691958 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr3 209345626 209345653 -8691505 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr3 209345684 209345706 -8691452 + AT_rich Low_complexity Low_complexity 1 22 0 1705 154 23 33 chr3 209348406 209348712 -8688446 - AluJb SINE Alu -9 303 1 2219 88 26 7 chr3 209348719 209349024 -8688134 - AluSp SINE Alu 0 313 3 7434 41 15 0 chr3 209350033 209350917 -8686241 - MER11D LTR ERVK 0 897 1 827 189 81 5 chr3 209351124 209351309 -8685849 - MER3 DNA MER1_type -10 199 1 872 184 86 12 chr3 209352073 209352236 -8684922 - FAM SINE Alu 0 175 1 1445 199 0 4 chr3 209352795 209353056 -8684102 - AluJo SINE Alu -43 269 10 1188 299 81 62 chr3 209353066 209353342 -8683816 + L2 LINE L2 1668 1937 -1377 2125 152 84 39 chr3 209353342 209353491 -8683667 + LOR1b LTR ERV1 1 142 -319 2233 99 10 3 chr3 209353491 209353794 -8683364 + AluSc SINE Alu 1 305 -4 2125 152 84 39 chr3 209353794 209354085 -8683073 + LOR1b LTR ERV1 142 461 0 1188 299 81 62 chr3 209354085 209354474 -8682684 + L2 LINE L2 1937 2346 -968 262 111 0 22 chr3 209354789 209354834 -8682324 + MLT1-int LTR MaLR 4 47 -1324 2113 93 10 17 chr3 209355145 209355447 -8681711 + AluSq SINE Alu 1 300 -13 2148 99 0 10 chr3 209355449 209355742 -8681416 + AluSx SINE Alu 1 290 -22 303 259 35 42 chr3 209355939 209356082 -8681076 + MLT1J2 LTR MaLR 68 209 -241 501 320 32 24 chr3 209356285 209356468 -8680690 + L2 LINE L2 2366 2553 -761 1516 109 29 0 chr3 209356468 209356678 -8680480 + AluSg/x SINE Alu 82 297 -15 501 320 32 24 chr3 209356678 209356744 -8680414 + L2 LINE L2 2553 2617 -697 298 346 29 15 chr3 209356741 209356877 -8680281 + MIR SINE MIR 61 198 -64 * 809 274 88 0 chr3 209356911 209357126 -8680032 - MIR SINE MIR -21 241 8 2262 110 0 0 chr3 209357967 209358276 -8678882 + AluY SINE Alu 3 311 0 341 234 9 0 chr3 209358301 209358412 -8678746 + GA-rich Low_complexity Low_complexity 1 112 0 25 0 0 0 chr3 209358696 209358721 -8678437 + AT_rich Low_complexity Low_complexity 1 25 0 425 288 51 8 chr3 209359038 209359156 -8678002 - MIR3 SINE MIR -47 161 39 23 0 0 0 chr3 209359280 209359303 -8677855 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr3 209360585 209360613 -8676545 + AT_rich Low_complexity Low_complexity 1 28 0 275 220 119 34 chr3 209360941 209361059 -8676099 + HAL1b LINE L1 1194 1321 -27 192 282 29 68 chr3 209363824 209363927 -8673231 - MIR3 SINE MIR -15 193 95 32 26 0 0 chr3 209363998 209364037 -8673121 + AT_rich Low_complexity Low_complexity 1 39 0 180 426 0 0 chr3 209366086 209366140 -8671018 + L2 LINE L2 3122 3175 -97 21 36 0 0 chr3 209366453 209366481 -8670677 + AT_rich Low_complexity Low_complexity 1 28 0 27 62 0 0 chr3 209366726 209366774 -8670384 + AT_rich Low_complexity Low_complexity 1 48 0 2059 143 0 7 chr3 209366880 209367188 -8669970 - AluSg SINE Alu -4 306 1 510 141 0 0 chr3 209367206 209367284 -8669874 + AluS SINE Alu 1 78 -232 11445 210 40 26 chr3 209367412 209368188 -8668970 + L1M1 LINE L1 2895 3659 -3906 2169 123 3 0 chr3 209368188 209368488 -8668670 + AluSc SINE Alu 2 302 -7 11445 210 40 26 chr3 209368488 209371242 -8665916 + L1M1 LINE L1 3659 6467 -1098 295 194 0 14 chr3 209371246 209371318 -8665840 - L1 LINE L1 -1507 4639 4569 926 196 54 5 chr3 209371326 209371530 -8665628 + L1MA8 LINE L1 4960 5173 -973 352 212 50 0 chr3 209371533 209371632 -8665526 + L1MA8 LINE L1 5254 5357 -934 * 2884 184 30 35 chr3 209371612 209371695 -8665463 + L1MA8 LINE L1 5579 5661 -630 1506 160 22 0 chr3 209371695 209372019 -8665139 + AluY SINE Alu 1 330 0 2884 184 30 35 chr3 209372019 209372628 -8664530 + L1MA8 LINE L1 5661 6269 -22 354 268 0 0 chr3 209372920 209373002 -8664156 - MIR SINE MIR -12 250 169 4765 221 39 75 chr3 209373681 209374019 -8663139 - L1 LINE L1 -796 5350 5001 2229 102 0 0 chr3 209374019 209374313 -8662845 - AluY SINE Alu -17 294 1 4765 221 39 75 chr3 209374313 209375487 -8661671 - L1 LINE L1 -1145 5001 3882 496 179 11 0 chr3 209375487 209375582 -8661576 + AluSg/x SINE Alu 205 300 -12 4765 221 39 75 chr3 209375582 209376144 -8661014 - L1 LINE L1 -2264 3882 3301 2071 86 3 38 chr3 209376377 209376709 -8660449 + AluSp SINE Alu 1 322 0 1229 321 115 48 chr3 209377231 209377310 -8659848 + L2 LINE L2 1609 1681 -1632 1856 152 0 7 chr3 209377310 209377616 -8659542 + AluSx SINE Alu 3 306 0 1229 321 115 48 chr3 209377616 209378816 -8658342 + L2 LINE L2 1681 3021 -292 282 95 0 0 chr3 209378816 209378858 -8658300 + (CA)n Simple_repeat Simple_repeat 2 43 0 1229 321 115 48 chr3 209378858 209379172 -8657986 + L2 LINE L2 3021 3313 0 183 390 26 52 chr3 209379943 209380097 -8657061 + L2 LINE L2 2934 3083 -189 2125 138 114 5 chr3 209380823 209381208 -8655950 + MSTA LTR MaLR 2 428 0 8899 156 25 40 chr3 209381208 209382615 -8654543 + MSTA-int LTR MaLR 1 1381 -270 2082 107 3 3 chr3 209382615 209382905 -8654253 - AluSg SINE Alu -20 290 1 8899 156 25 40 chr3 209382905 209383173 -8653985 + MSTA-int LTR MaLR 1381 1651 0 1784 175 154 5 chr3 209383173 209383544 -8653614 + MSTA LTR MaLR 1 426 -2 2551 46 0 10 chr3 209384041 209384346 -8652812 - AluY SINE Alu -9 302 1 3495 169 11 12 chr3 209384489 209385142 -8652016 + MER41B LTR ERV1 1 476 -2 966 183 139 40 chr3 209385306 209385580 -8651578 + LTR48 LTR ERV1 1 301 -486 586 238 81 76 chr3 209385574 209385925 -8651233 + LTR48 LTR ERV1 228 787 0 * 2057 108 42 0 chr3 209386527 209386815 -8650343 - AluSx SINE Alu -12 300 1 777 274 77 11 chr3 209386841 209387115 -8650043 + LTR16C LTR ERVL 186 477 -14 6386 114 19 9 chr3 209387219 209388806 -8648352 - L1PA12 LINE L1 -2 6166 4572 1971 123 18 0 chr3 209389189 209389489 -8647669 - AluSx SINE Alu 0 305 1 2126 134 0 0 chr3 209390356 209390684 -8646474 - AluSg SINE Alu 0 335 8 579 303 41 27 chr3 209390838 209391067 -8646091 - HERVL LTR ERVL -2514 3140 2914 904 229 33 9 chr3 209391067 209391281 -8645877 - MER20 DNA MER1_type 0 219 1 579 303 41 27 chr3 209391281 209391477 -8645681 - HERVL LTR ERVL -2740 2914 2722 345 184 14 129 chr3 209391650 209391714 -8645444 + LTR40a LTR ERVL 4 43 -476 2226 79 6 38 chr3 209391714 209392030 -8645128 - AluY SINE Alu -5 306 1 345 184 14 129 chr3 209392030 209392103 -8645055 + LTR40a LTR ERVL 43 124 -395 2144 147 30 15 chr3 209392103 209392498 -8644660 + MSTA LTR MaLR 1 401 -27 2101 137 0 9 chr3 209392508 209392823 -8644335 - AluSx SINE Alu 0 312 1 1465 244 25 27 chr3 209392867 209393269 -8643889 + LTR40a LTR ERVL 119 519 0 789 331 60 30 chr3 209393269 209393765 -8643393 - HERVL LTR ERVL -3255 2509 1999 2127 116 3 42 chr3 209394415 209394726 -8642432 + AluSx SINE Alu 1 299 -13 258 200 83 91 chr3 209395529 209395575 -8641583 - L1ME LINE L1 -541 5623 5578 1978 105 72 0 chr3 209395575 209395852 -8641306 - AluSx SINE Alu -15 297 1 258 200 83 91 chr3 209395852 209395916 -8641242 - L1ME LINE L1 -586 5578 5509 2591 194 8 17 chr3 209395918 209396278 -8640880 + MER41D LTR ERV1 43 398 -159 2232 129 0 0 chr3 209396278 209396588 -8640570 - AluSx SINE Alu -2 310 1 2591 194 8 17 chr3 209396588 209396747 -8640411 + MER41D LTR ERV1 398 557 0 392 367 75 42 chr3 209396844 209397050 -8640108 - L1MEc LINE L1 -6014 382 157 3952 172 52 50 chr3 209397050 209397571 -8639587 + MER21B LTR ERV1 1 526 -337 2327 94 3 3 chr3 209397571 209397870 -8639288 - AluSq SINE Alu -14 299 1 3952 172 52 50 chr3 209397870 209398208 -8638950 + MER21B LTR ERV1 526 862 -1 392 367 75 42 chr3 209398208 209398361 -8638797 - L1MEc LINE L1 -6239 157 11 232 311 47 34 chr3 209398480 209398628 -8638530 - MLT1G1 LTR MaLR -7 588 439 3353 164 122 23 chr3 209398782 209400113 -8637045 - pTR5 LTR ERV1 -156 1798 31 270 0 0 0 chr3 209400125 209400155 -8637003 + (TTG)n Simple_repeat Simple_repeat 1 30 0 1896 133 0 4 chr3 209400159 209400437 -8636721 - AluSx SINE Alu -35 277 1 24 0 0 0 chr3 209400440 209400464 -8636694 + AT_rich Low_complexity Low_complexity 1 24 0 603 276 35 22 chr3 209400484 209400712 -8636446 - MLT1G1 LTR MaLR -364 231 1 1916 170 0 6 chr3 209401017 209401328 -8635830 - AluSx SINE Alu -3 309 1 207 0 0 0 chr3 209401368 209401391 -8635767 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2025 122 0 33 chr3 209402135 209402439 -8634719 + AluSg SINE Alu 1 294 -16 1306 291 110 12 chr3 209402544 209403369 -8633789 - L2 LINE L2 -4 3309 2406 404 212 111 7 chr3 209403451 209403589 -8633569 + MSTC LTR MaLR 1 156 -209 217 248 0 26 chr3 209404243 209404302 -8632856 + (TATATG)n Simple_repeat Simple_repeat 2 58 -53 2216 104 0 0 chr3 209404302 209404590 -8632568 + AluSq SINE Alu 1 288 -25 217 248 0 26 chr3 209404590 209404643 -8632515 + (TATATG)n Simple_repeat Simple_repeat 58 111 0 1537 298 83 106 chr3 209404902 209405689 -8631469 - L2 LINE L2 -1294 2020 1216 1629 140 32 95 chr3 209405689 209406026 -8631132 - AluSx SINE Alu 0 317 1 1537 298 83 106 chr3 209406026 209406516 -8630642 - L2 LINE L2 -2098 1216 716 2134 154 70 7 chr3 209406516 209406919 -8630239 + MSTC LTR MaLR 1 428 0 1537 298 83 106 chr3 209406919 209406931 -8630227 - L2 LINE L2 -2598 716 705 2541 100 22 8 chr3 209406931 209407290 -8629868 + THE1B LTR MaLR 1 364 0 1537 298 83 106 chr3 209407290 209407324 -8629834 - L2 LINE L2 -2609 705 672 2077 136 0 3 chr3 209407324 209407619 -8629539 + AluSx SINE Alu 1 294 -18 1537 298 83 106 chr3 209407619 209408139 -8629019 - L2 LINE L2 -2642 672 215 843 181 76 27 chr3 209408236 209408519 -8628639 + MLT1B LTR MaLR 4 390 0 654 183 33 0 chr3 209408776 209408896 -8628262 - L2 LINE L2 0 3313 3190 788 301 133 15 chr3 209409655 209409771 -8627387 - LTR33 LTR ERVL 0 521 420 1742 106 0 4 chr3 209409771 209410007 -8627151 + AluSx SINE Alu 1 235 -77 788 301 133 15 chr3 209410007 209410348 -8626810 - LTR33 LTR ERVL -101 420 10 323 176 162 0 chr3 209410500 209410574 -8626584 - MER58 DNA MER1_type -2 2418 2333 297 0 0 0 chr3 209412853 209412886 -8624272 + (CA)n Simple_repeat Simple_repeat 2 34 0 219 69 0 0 chr3 209416239 209416268 -8620890 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 21 36 0 0 chr3 209416931 209416959 -8620199 + AT_rich Low_complexity Low_complexity 1 28 0 320 253 27 89 chr3 209417020 209417166 -8619992 - MIR3 SINE MIR -18 190 54 243 274 27 14 chr3 209417208 209417281 -8619877 + CT-rich Low_complexity Low_complexity 3 76 0 893 165 140 13 chr3 209418353 209418589 -8618569 - L1ME1 LINE L1 -16 6150 5885 1532 205 68 70 chr3 209418601 209419143 -8618015 - L1ME1 LINE L1 -396 5770 5230 207 330 132 0 chr3 209419162 209419268 -8617890 + MER5B DNA MER1_type 12 131 -47 983 205 60 7 chr3 209419459 209419730 -8617428 + MER58 DNA MER1_type 40 2405 -15 1591 116 0 0 chr3 209419983 209420199 -8616959 - AluSg SINE Alu -94 216 1 299 313 53 38 chr3 209422674 209422805 -8614353 - MIR3 SINE MIR -25 183 51 1451 169 63 0 chr3 209423395 209423649 -8613509 - AluJo SINE Alu -15 297 28 559 250 113 54 chr3 209423817 209424021 -8613137 - MIR SINE MIR 0 262 47 1278 178 12 21 chr3 209425531 209425772 -8611386 - MER8 DNA MER2_type 0 239 1 205 353 88 0 chr3 209425784 209425886 -8611272 - MIR SINE MIR -107 155 45 664 221 53 16 chr3 209426842 209427032 -8610126 + MER3 DNA MER1_type 1 197 -12 207 0 0 0 chr3 209427128 209427151 -8610007 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1941 128 3 3 chr3 209427153 209427435 -8609723 - AluSx SINE Alu -30 282 1 234 349 81 17 chr3 209429202 209429374 -8607784 + L3 LINE CR1 1299 1481 -96 250 283 76 22 chr3 209430077 209430169 -8606989 + MIR SINE MIR 49 145 -63 202 365 79 16 chr3 209430464 209430590 -8606568 - L2 LINE L2 0 3272 3139 872 204 0 21 chr3 209432106 209432292 -8604866 + L1PB4 LINE L1 5974 6155 -1 381 328 11 28 chr3 209432567 209432744 -8604414 + MIR SINE MIR 32 205 -57 463 171 0 0 chr3 209435004 209435086 -8602072 + Tigger1 DNA MER2_type 1 82 -2336 * 1068 138 4 86 chr3 209435085 209435317 -8601841 + Tigger1 DNA MER2_type 2205 2417 -1 25 0 0 0 chr3 209436899 209436924 -8600234 + AT_rich Low_complexity Low_complexity 1 25 0 744 213 29 36 chr3 209437296 209437607 -8599551 + MER2 DNA MER2_type 6 345 0 228 271 112 9 chr3 209437609 209437716 -8599442 + MER112 DNA MER1_type 138 255 -5 300 324 33 45 chr3 209438051 209438213 -8598945 + MIR3 SINE MIR 20 177 -31 500 324 0 34 chr3 209440257 209440461 -8596697 + MIR SINE MIR 12 208 -54 376 266 33 52 chr3 209440859 209441046 -8596112 + MIR SINE MIR 24 201 -24 450 300 107 65 chr3 209441746 209442215 -8594943 - L2 LINE L2 -222 3050 2556 387 316 134 16 chr3 209443380 209443567 -8593591 + MIR SINE MIR 54 262 0 1838 185 98 16 chr3 209443940 209444368 -8592790 - MLT1C LTR MaLR -4 463 1 1468 176 40 34 chr3 209444685 209444981 -8592177 - AluJb SINE Alu -14 298 1 268 343 69 0 chr3 209445774 209445876 -8591282 - MIR SINE MIR -62 146 38 430 263 113 36 chr3 209445916 209446110 -8591048 + MIR SINE MIR 28 236 -26 2030 128 3 3 chr3 209446625 209446923 -8590235 - AluSc SINE Alu -11 298 1 22 0 0 0 chr3 209447144 209447166 -8589992 + AT_rich Low_complexity Low_complexity 1 22 0 202 337 11 0 chr3 209447369 209447458 -8589700 + CT-rich Low_complexity Low_complexity 2 91 0 879 122 58 7 chr3 209448422 209448561 -8588597 - MER46A DNA MER2_type -90 146 1 486 177 120 63 chr3 209448424 209448582 -8588576 + MER46A DNA MER2_type 1 167 -69 * 245 322 26 66 chr3 209451466 209451618 -8585540 + L2 LINE L2 2712 2857 -457 189 0 0 0 chr3 209452761 209452782 -8584376 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2050 36 8 0 chr3 209452782 209453032 -8584126 - L1PA4 LINE L1 -12 6143 5892 2216 126 0 0 chr3 209453035 209453345 -8583813 - AluSx SINE Alu -2 310 1 227 31 31 0 chr3 209453806 209453838 -8583320 + (ATGGTG)n Simple_repeat Simple_repeat 3 35 0 24 32 0 0 chr3 209454743 209454774 -8582384 + AT_rich Low_complexity Low_complexity 1 31 0 215 167 56 0 chr3 209455619 209455673 -8581485 + (TATATG)n Simple_repeat Simple_repeat 1 57 0 236 264 28 56 chr3 209458580 209458641 -8578517 + MIR3 SINE MIR 111 169 -39 252 301 127 40 chr3 209458641 209458814 -8578344 + MER5A DNA MER1_type 2 189 0 246 167 0 21 chr3 209459731 209459779 -8577379 + Charlie8 DNA MER1_type 1382 1428 -989 407 224 82 35 chr3 209459890 209460060 -8577098 - LTR37B LTR ERV1 -87 381 204 228 35 0 0 chr3 209461286 209461315 -8575843 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 435 260 28 55 chr3 209461690 209461871 -8575287 + MER5B DNA MER1_type 3 178 0 4909 169 48 10 chr3 209467236 209468770 -8568388 - L1PA16 LINE L1 -14 6152 4554 2193 109 0 0 chr3 209468770 209469063 -8568095 - AluSx SINE Alu -19 293 1 4909 169 48 10 chr3 209469063 209469142 -8568016 - L1PA16 LINE L1 -1612 4554 4480 833 234 14 0 chr3 209469143 209469361 -8567797 + L1PA16 LINE L1 4265 4485 -1661 403 265 212 26 chr3 209469586 209469850 -8567308 - L2 LINE L2 0 3313 3001 198 171 0 0 chr3 209470758 209470799 -8566359 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 548 316 60 14 chr3 209470844 209471062 -8566096 + MIR SINE MIR 5 232 -30 22 56 0 0 chr3 209471445 209471481 -8565677 + AT_rich Low_complexity Low_complexity 1 36 0 184 235 12 12 chr3 209471594 209471679 -8565479 + T-rich Low_complexity Low_complexity 3 87 0 1753 162 48 7 chr3 209472388 209472678 -8564480 - AluJb SINE Alu -10 302 1 3844 106 45 15 chr3 209472895 209473511 -8563647 - MER41B LTR ERV1 0 635 1 227 230 54 108 chr3 209473605 209473753 -8563405 + MIR SINE MIR 120 259 -3 338 258 15 65 chr3 209473848 209473980 -8563178 + MER5B DNA MER1_type 47 183 -6 216 0 0 0 chr3 209475336 209475360 -8561798 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2021 131 0 0 chr3 209475362 209475644 -8561514 - AluSx SINE Alu -30 282 1 21 36 0 0 chr3 209476527 209476555 -8560603 + AT_rich Low_complexity Low_complexity 1 28 0 27 62 0 0 chr3 209476802 209476850 -8560308 + AT_rich Low_complexity Low_complexity 1 48 0 180 0 0 0 chr3 209477079 209477099 -8560059 + (TTG)n Simple_repeat Simple_repeat 2 21 0 22 0 0 0 chr3 209481108 209481130 -8556028 + AT_rich Low_complexity Low_complexity 1 22 0 217 247 68 55 chr3 209481634 209481707 -8555451 + MIR3 SINE MIR 111 184 -24 2534 62 0 3 chr3 209481992 209482299 -8554859 - AluY SINE Alu -5 306 1 220 337 22 11 chr3 209482546 209482638 -8554520 + MIR SINE MIR 44 136 -72 495 256 47 0 chr3 209483523 209483652 -8553506 - L1MDa LINE L1 -3362 3178 3044 252 192 39 0 chr3 209483660 209483712 -8553446 - Tigger5 DNA MER2_type -6 2317 2264 * 331 164 33 0 chr3 209483708 209483769 -8553389 + Tigger5 DNA MER2_type 2242 2304 -19 560 231 77 11 chr3 209483844 209484026 -8553132 - L1MDa LINE L1 -3498 3042 2849 1792 200 55 74 chr3 209484056 209484621 -8552537 - MLT2B3 LTR ERVL 0 554 1 2018 153 0 28 chr3 209484670 209484997 -8552161 + MER1B DNA MER1_type 22 339 0 795 185 123 15 chr3 209485022 209485217 -8551941 - L1MDa LINE L1 -6310 230 15 2655 196 101 6 chr3 209485608 209486280 -8550878 - L1MB4 LINE L1 0 6678 5943 * 3167 232 25 20 chr3 209486269 209487059 -8550099 - L1MB4 LINE L1 -1174 5470 4685 1955 198 72 12 chr3 209487059 209487459 -8549699 - MSTB LTR MaLR 0 426 3 8497 190 20 4 chr3 209487461 209489086 -8548072 - MSTB-int LTR MaLR 0 1651 1 2152 172 71 2 chr3 209489089 209489484 -8547674 - MSTB LTR MaLR -4 422 1 3167 232 25 20 chr3 209489484 209489566 -8547592 - L1MB4 LINE L1 -1960 4684 4587 4130 228 95 21 chr3 209489569 209489715 -8547443 - L1MB4 LINE L1 -2490 4154 4020 2245 97 0 10 chr3 209489715 209490013 -8547145 - AluY SINE Alu -12 299 5 4130 228 95 21 chr3 209490013 209490547 -8546611 - L1MB4 LINE L1 -2624 4020 3527 312 27 0 0 chr3 209490547 209490584 -8546574 + (TG)n Simple_repeat Simple_repeat 2 38 0 4130 228 95 21 chr3 209490584 209491640 -8545518 - L1MB4 LINE L1 -3117 3527 2551 1596 63 0 0 chr3 209491640 209491845 -8545313 + L1PA5 LINE L1 5947 6151 -3 4130 228 95 21 chr3 209491845 209491956 -8545202 - L1MB4 LINE L1 -4093 2551 2450 2026 153 50 0 chr3 209491956 209492277 -8544881 + MER1B DNA MER1_type 1 337 0 4130 228 95 21 chr3 209492277 209492801 -8544357 - L1MB4 LINE L1 -4194 2450 1597 1767 269 107 59 chr3 209492782 209493875 -8543283 - L1MB4 LINE L1 -5336 1206 61 * 300 226 129 0 chr3 209494028 209494121 -8543037 + L1MC4a LINE L1 5793 5897 -1911 392 133 0 13 chr3 209494463 209494538 -8542620 + (TC)n Simple_repeat Simple_repeat 1 74 0 23 68 0 0 chr3 209494712 209494756 -8542402 + AT_rich Low_complexity Low_complexity 1 44 0 194 182 23 0 chr3 209494772 209494816 -8542342 - MER5A DNA MER1_type -80 109 65 810 102 15 22 chr3 209494838 209494975 -8542183 - L1PB2 LINE L1 -7 6144 6009 1061 73 0 0 chr3 209494984 209495121 -8542037 - L1PA10 LINE L1 -8 6160 6024 2587 173 17 19 chr3 209495305 209495778 -8541380 - MER70A LTR ERVL 0 472 1 358 227 93 53 chr3 209495883 209496089 -8541069 + L1M4 LINE L1 2148 2367 -3779 2036 140 0 16 chr3 209496089 209496225 -8540933 + AluSq SINE Alu 1 138 -175 2300 82 14 0 chr3 209496225 209496518 -8540640 + AluY SINE Alu 2 298 -13 2036 140 0 16 chr3 209496518 209496696 -8540462 + AluSq SINE Alu 138 310 -3 358 227 93 53 chr3 209496696 209496736 -8540422 + L1M4 LINE L1 2367 2404 -3742 181 279 66 16 chr3 209497065 209497126 -8540032 + L3 LINE CR1 1512 1575 -2 2372 142 25 48 chr3 209497663 209497745 -8539413 - MSTA LTR MaLR 0 428 346 2062 112 21 3 chr3 209497745 209498032 -8539126 + AluSx SINE Alu 9 300 -12 2372 142 25 48 chr3 209498032 209498387 -8538771 - MSTA LTR MaLR -82 346 1 2165 94 3 7 chr3 209498599 209498897 -8538261 + AluSx SINE Alu 1 297 -15 763 200 149 14 chr3 209499053 209499328 -8537830 - MER33 DNA MER1_type -11 313 2 1730 106 78 0 chr3 209499403 209499557 -8537601 - AluSq SINE Alu -12 301 118 309 51 0 0 chr3 209499557 209499596 -8537562 + (TG)n Simple_repeat Simple_repeat 2 40 0 1730 106 78 0 chr3 209499596 209499696 -8537462 - AluSq SINE Alu -195 118 27 1200 148 0 0 chr3 209500070 209500253 -8536905 + AluJb SINE Alu 128 310 -2 13698 136 61 3 chr3 209500444 209502702 -8534456 + Tigger1 DNA MER2_type 31 2418 0 224 296 44 121 chr3 209502703 209503223 -8533935 - L2 LINE L2 -1774 1540 1061 409 234 106 21 chr3 209503740 209503881 -8533277 + MIR SINE MIR 14 166 -96 344 340 119 55 chr3 209504187 209504607 -8532551 - L3 LINE CR1 -123 1454 1008 5881 105 22 2 chr3 209505396 209506666 -8530492 + L1PA13 LINE L1 4873 6163 0 247 250 0 0 chr3 209506956 209507012 -8530146 + MIR SINE MIR 82 137 -71 206 222 0 0 chr3 209507873 209507909 -8529249 + polypyrimidine Low_complexity Low_complexity 2 37 0 2246 128 43 8 chr3 209507945 209508297 -8528861 + THE1B LTR MaLR 1 364 0 330 279 39 31 chr3 209508903 209509032 -8528126 - MIR3 SINE MIR -77 131 2 377 260 30 0 chr3 209509099 209509199 -8527959 + MER5A DNA MER1_type 10 112 -77 543 220 39 94 chr3 209510068 209510323 -8526835 + L1MC4 LINE L1 7641 7881 -161 207 225 0 0 chr3 209510334 209510374 -8526784 + (TA)n Simple_repeat Simple_repeat 1 40 0 337 212 136 0 chr3 209510417 209510535 -8526623 + L1MC4 LINE L1 7909 8042 0 314 247 75 48 chr3 209510684 209510870 -8526288 + L1ME4a LINE L1 5931 6121 0 200 277 0 0 chr3 209511631 209511678 -8525480 + (CA)n Simple_repeat Simple_repeat 2 48 0 318 302 34 62 chr3 209511808 209511987 -8525171 - L1ME LINE L1 -366 5755 5582 21 71 0 0 chr3 209512166 209512208 -8524950 + AT_rich Low_complexity Low_complexity 1 42 0 192 214 0 0 chr3 209512416 209512472 -8524686 + A-rich Low_complexity Low_complexity 1 56 0 1711 204 20 68 chr3 209512508 209512997 -8524161 - MER31B LTR ERV1 0 466 1 279 321 0 0 chr3 209513279 209513360 -8523798 - MER5A DNA MER1_type -93 96 16 360 0 0 0 chr3 209513468 209513508 -8523650 + (CA)n Simple_repeat Simple_repeat 2 41 0 189 233 0 23 chr3 209513618 209513661 -8523497 - MIR SINE MIR -82 126 85 1106 252 65 6 chr3 209513811 209514152 -8523006 - L2 LINE L2 -939 2375 2015 302 305 163 0 chr3 209514152 209514293 -8522865 - L2 LINE L2 -1805 1509 1346 24 0 0 0 chr3 209514420 209514444 -8522714 + AT_rich Low_complexity Low_complexity 1 24 0 1592 177 68 9 chr3 209514756 209515095 -8522063 - MLT1A1 LTR MaLR 0 365 7 1840 121 6 67 chr3 209516106 209516419 -8520739 - AluSx SINE Alu -18 294 1 24 0 0 0 chr3 209517286 209517310 -8519848 + AT_rich Low_complexity Low_complexity 1 24 0 186 324 59 0 chr3 209517321 209517389 -8519769 - MIR SINE MIR -111 151 80 267 333 24 0 chr3 209519012 209519138 -8518020 - LTR33A LTR ERVL -1 522 394 341 308 149 15 chr3 209519247 209519442 -8517716 - LTR50 LTR ERVL -574 221 1 205 366 30 10 chr3 209520521 209520622 -8516536 + L2 LINE L2 2927 3029 -243 607 197 22 13 chr3 209520936 209521164 -8515994 + CT-rich Low_complexity Low_complexity 1 230 0 329 318 0 28 chr3 209522392 209522499 -8514659 + MIR3 SINE MIR 66 169 -39 5760 121 9 4 chr3 209522548 209523684 -8513474 + L1PA15 LINE L1 5026 6165 0 242 325 62 97 chr3 209524142 209524450 -8512708 - L2 LINE L2 0 3272 2976 462 351 165 27 chr3 209524523 209525704 -8511454 - L2 LINE L2 -428 2886 1543 741 145 7 0 chr3 209526774 209526912 -8510246 - L1MA7 LINE L1 0 6291 6153 320 225 40 46 chr3 209527944 209528117 -8509041 + L1MC5 LINE L1 7579 7750 -211 1211 245 40 29 chr3 209528163 209528616 -8508542 - HsTC2 DNA Tc2 -1 1897 1264 337 247 90 0 chr3 209528614 209528703 -8508455 - HsTC2 DNA Tc2 -1751 147 51 * 4998 162 63 16 chr3 209528714 209530458 -8506700 - L1MA4 LINE L1 -5 6477 4665 4666 177 11 21 chr3 209530436 209531267 -8505891 - L1MA4 LINE L1 -2179 4149 3329 * 2120 123 20 3 chr3 209531267 209531567 -8505591 - AluSx SINE Alu -7 305 1 4666 177 11 21 chr3 209531567 209531793 -8505365 - L1MA4 LINE L1 -2999 3329 3102 3822 116 2 0 chr3 209531797 209532341 -8504817 - MER41B LTR ERV1 -88 547 3 4726 120 34 10 chr3 209532341 209532589 -8504569 - MER41B-int LTR ERV1 0 5946 5706 2353 92 0 3 chr3 209532589 209532895 -8504263 + AluSc SINE Alu 1 305 -4 4726 120 34 10 chr3 209532895 209533372 -8503786 - MER41B-int LTR ERV1 -240 5706 5203 243 61 0 0 chr3 209533378 209533411 -8503747 + (TTG)n Simple_repeat Simple_repeat 2 34 0 651 154 0 0 chr3 209533412 209533516 -8503642 - AluJb SINE Alu -38 274 171 1752 257 39 40 chr3 209533523 209534192 -8502966 - L1MA4 LINE L1 -4121 1207 540 810 332 39 20 chr3 209534919 209535356 -8501802 - L1M3a LINE L1 -5503 628 3 331 169 32 145 chr3 209535606 209535730 -8501428 - MIR SINE MIR -50 212 103 27 29 0 0 chr3 209536135 209536169 -8500989 + AT_rich Low_complexity Low_complexity 1 34 0 313 190 22 136 chr3 209536265 209536449 -8500709 - L1ME4a LINE L1 0 6121 5959 479 344 70 30 chr3 209537480 209537809 -8499349 + LTR67 LTR ERVL 32 373 -184 21 36 0 0 chr3 209537893 209537921 -8499237 + AT_rich Low_complexity Low_complexity 1 28 0 2051 61 0 0 chr3 209538806 209539052 -8498106 + AluY SINE Alu 44 289 -22 361 319 122 5 chr3 209539196 209539384 -8497774 - MLT1K LTR MaLR -124 464 255 262 416 0 0 chr3 209540146 209540259 -8496899 + MIR SINE MIR 16 128 -80 2052 121 0 4 chr3 209540293 209540574 -8496584 + AluSx SINE Alu 1 280 -32 2363 93 3 0 chr3 209540902 209541204 -8495954 - AluSp SINE Alu -10 303 1 3127 157 63 14 chr3 209541309 209541882 -8495276 + MER6A DNA MER2_type 1 601 -4 5926 233 23 28 chr3 209542039 209543705 -8493453 + L1MB8 LINE L1 3736 5393 -753 3138 194 56 46 chr3 209544213 209544998 -8492160 + L1MB8 LINE L1 5385 6177 -1 242 274 6 96 chr3 209545020 209545177 -8491981 - L1M LINE L1 -2412 5396 5254 312 318 55 58 chr3 209545202 209545529 -8491629 - L1M4 LINE L1 -944 5202 4877 820 182 11 0 chr3 209545571 209545747 -8491411 + CT-rich Low_complexity Low_complexity 2 179 0 1070 172 6 0 chr3 209545750 209545930 -8491228 - AluSg/x SINE Alu 0 312 132 486 174 12 0 chr3 209546078 209546164 -8490994 + Tigger5 DNA MER2_type 2237 2323 0 371 327 109 53 chr3 209546434 209546641 -8490517 - L1M4 LINE L1 -1609 4537 4343 2099 148 0 0 chr3 209546641 209546938 -8490220 - AluSx SINE Alu -15 297 1 371 327 109 53 chr3 209546938 209547347 -8489811 - L1M4 LINE L1 -1803 4343 3887 1736 124 18 11 chr3 209547414 209547688 -8489470 - THE1C LTR MaLR 0 375 100 9814 33 0 0 chr3 209547704 209549645 -8487513 - L1PA3 LINE L1 0 6155 4213 4919 29 0 0 chr3 209549645 209550224 -8486934 + L1PA3 LINE L1 3655 4233 -1913 573 183 0 29 chr3 209550224 209550328 -8486830 - THE1C LTR MaLR -274 101 1 1838 122 108 15 chr3 209550332 209550675 -8486483 - THE1C LTR MaLR 0 375 1 696 304 63 18 chr3 209551470 209551911 -8485247 - HAL1b LINE L1 -803 545 85 24 67 0 0 chr3 209551971 209552016 -8485142 + AT_rich Low_complexity Low_complexity 1 45 0 207 218 0 0 chr3 209553053 209553108 -8484050 + CT-rich Low_complexity Low_complexity 3 57 0 1199 228 34 15 chr3 209553296 209553559 -8483599 + MER45C DNA AcHobo 8 275 -678 246 350 81 69 chr3 209553627 209553787 -8483371 + MER45C DNA AcHobo 448 609 -344 248 241 19 0 chr3 209553800 209553854 -8483304 + MER45C DNA AcHobo 899 953 0 1743 198 18 3 chr3 209553861 209554200 -8482958 + MER2 DNA MER2_type 1 344 0 233 312 106 24 chr3 209555087 209555257 -8481901 - L2 LINE L2 -172 3100 2917 32 26 0 0 chr3 209555882 209555921 -8481237 + AT_rich Low_complexity Low_complexity 1 39 0 184 148 0 0 chr3 209556039 209556066 -8481092 - MIR SINE MIR -117 145 119 335 293 62 7 chr3 209556106 209556240 -8480918 - MIR3 SINE MIR -30 178 36 1919 129 49 0 chr3 209557669 209557955 -8479203 + AluSx SINE Alu 1 300 -12 2128 105 0 17 chr3 209558556 209558851 -8478307 - AluSx SINE Alu -22 290 1 247 231 0 0 chr3 209558902 209558967 -8478191 - HAL1 LINE L1 -354 2153 2089 186 43 0 0 chr3 209559875 209559898 -8477260 + (TG)n Simple_repeat Simple_repeat 2 24 0 210 233 39 68 chr3 209560034 209560137 -8477021 + MIR SINE MIR 91 190 -72 26 30 0 0 chr3 209560554 209560587 -8476571 + AT_rich Low_complexity Low_complexity 1 33 0 2016 100 72 0 chr3 209560750 209561040 -8476118 - AluSq SINE Alu -2 311 1 32 0 0 0 chr3 209561051 209561083 -8476075 + AT_rich Low_complexity Low_complexity 1 32 0 192 312 55 55 chr3 209561195 209561304 -8475854 - L2 LINE L2 -361 2952 2844 309 296 101 35 chr3 209562340 209562509 -8474649 - MIR3 SINE MIR -20 188 9 1915 100 28 92 chr3 209563011 209563370 -8473788 + L1PB4 LINE L1 5354 5689 -467 10773 177 8 10 chr3 209563376 209564670 -8472488 + L1MA3 LINE L1 16 1311 -6254 1979 113 52 23 chr3 209564670 209565015 -8472143 + THE1A LTR MaLR 1 355 0 11849 93 4 1 chr3 209565015 209566591 -8470567 + THE1A-int LTR MaLR 1 1580 0 2348 111 17 8 chr3 209566591 209566943 -8470215 + THE1A LTR MaLR 1 355 0 10773 177 8 10 chr3 209566943 209567466 -8469692 + L1MA3 LINE L1 1308 1831 -5734 * 12648 166 44 30 chr3 209567464 209571825 -8465333 + L1MA3 LINE L1 3300 7723 -1 2384 168 50 2 chr3 209571831 209572290 -8464868 + L1PB4 LINE L1 5672 6152 -4 2421 74 0 0 chr3 209572525 209572821 -8464337 - AluY SINE Alu -15 296 1 2254 102 0 26 chr3 209573012 209573325 -8463833 + AluSq SINE Alu 1 305 -8 207 69 0 0 chr3 209573858 209573887 -8463271 + (T)n Simple_repeat Simple_repeat 1 29 0 765 205 22 79 chr3 209574151 209574318 -8462840 + MER20 DNA MER1_type 3 178 -41 216 0 0 0 chr3 209574318 209574342 -8462816 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 408 40 0 0 chr3 209574341 209574391 -8462767 + (CA)n Simple_repeat Simple_repeat 1 50 0 765 205 22 79 chr3 209574342 209574452 -8462706 + MER20 DNA MER1_type 178 218 -1 216 182 0 0 chr3 209575235 209575279 -8461879 + GA-rich Low_complexity Low_complexity 1 44 0 506 244 49 49 chr3 209575280 209575444 -8461714 + MER63A DNA MER1_type 47 210 0 224 297 31 0 chr3 209575529 209575593 -8461565 + MIR3 SINE MIR 118 183 -25 25 65 0 0 chr3 209575786 209575832 -8461326 + AT_rich Low_complexity Low_complexity 1 46 0 9434 181 69 70 chr3 209576890 209577471 -8459687 - L1MC3 LINE L1 -9 8056 7476 270 254 16 0 chr3 209577471 209577534 -8459624 - MLT1F1 LTR MaLR -451 116 53 9434 181 69 70 chr3 209577534 209579321 -8457837 - L1MC3 LINE L1 -589 7476 5629 560 224 7 14 chr3 209579318 209579461 -8457697 + L1M4 LINE L1 4803 4944 -1202 * 2029 243 26 31 chr3 209579494 209580136 -8457022 - L1MC3 LINE L1 -780 5646 5008 276 284 156 0 chr3 209580146 209580255 -8456903 - L1MC3 LINE L1 -6284 142 17 191 333 15 0 chr3 209580390 209580456 -8456702 + MIR3 SINE MIR 108 174 -34 182 205 103 0 chr3 209581307 209581346 -8455812 + MIR SINE MIR 61 103 -105 857 279 9 13 chr3 209581366 209581592 -8455566 - MIR SINE MIR -36 226 2 199 371 124 0 chr3 209581613 209581710 -8455448 - L2 LINE L2 -6 3266 3158 335 277 0 20 chr3 209581726 209581827 -8455331 + MER5A DNA MER1_type 4 102 -87 276 276 46 46 chr3 209581900 209581987 -8455171 + MIR3 SINE MIR 101 187 -21 220 346 98 8 chr3 209582573 209582706 -8454452 - MIR3 SINE MIR -17 191 47 242 306 157 9 chr3 209582988 209583096 -8454062 - MIR SINE MIR -74 188 65 216 227 34 0 chr3 209583807 209583895 -8453263 + (TA)n Simple_repeat Simple_repeat 2 92 0 549 282 58 6 chr3 209584539 209584713 -8452445 + MER5A DNA MER1_type 7 189 0 2717 7 0 16 chr3 209586360 209586667 -8450491 + AluYb8 SINE Alu 1 302 -16 2223 247 54 57 chr3 209586669 209586983 -8450175 + MER21B LTR ERV1 15 328 -535 880 229 6 0 chr3 209586983 209587140 -8450018 + FAM SINE Alu 1 158 -17 267 31 0 0 chr3 209587140 209587172 -8449986 + (CA)n Simple_repeat Simple_repeat 2 33 0 2223 247 54 57 chr3 209587172 209587593 -8449565 + MER21B LTR ERV1 326 749 -114 234 371 86 17 chr3 209588367 209588483 -8448675 - L2 LINE L2 -13 3259 3136 555 324 27 37 chr3 209588564 209588925 -8448233 + L2 LINE L2 2567 2922 -350 2526 107 8 14 chr3 209588947 209589313 -8447845 - THE1B LTR MaLR 0 364 1 494 317 3 92 chr3 209589456 209589794 -8447364 + L2 LINE L2 3006 3313 0 242 290 53 71 chr3 209590367 209590536 -8446622 + MIR SINE MIR 96 261 -1 225 0 0 0 chr3 209591500 209591525 -8445633 + (TG)n Simple_repeat Simple_repeat 2 26 0 2055 101 0 11 chr3 209591883 209592192 -8444966 - AluSq SINE Alu 0 306 1 410 294 53 53 chr3 209592755 209592925 -8444233 - MIR3 SINE MIR -4 204 35 183 327 89 64 chr3 209593653 209593855 -8443303 - MIR SINE MIR -50 212 6 198 103 0 0 chr3 209593855 209593884 -8443274 + (CA)n Simple_repeat Simple_repeat 2 30 0 244 214 12 48 chr3 209594270 209594354 -8442804 + Charlie8 DNA MER1_type 62 142 -2275 29 0 0 0 chr3 209594757 209594786 -8442372 + AT_rich Low_complexity Low_complexity 1 29 0 2113 222 17 43 chr3 209594790 209595367 -8441791 - L1MA10 LINE L1 -13 6321 5760 2170 124 33 33 chr3 209595367 209595731 -8441427 - THE1B LTR MaLR 0 364 1 11573 98 3 6 chr3 209595731 209597313 -8439845 - THE1B-int LTR MaLR 0 1580 3 2323 125 14 22 chr3 209597315 209597682 -8439476 - THE1B LTR MaLR 0 364 1 192 289 148 39 chr3 209599183 209599311 -8437847 + L2 LINE L2 3026 3167 -146 36 40 0 0 chr3 209599331 209599381 -8437777 + AT_rich Low_complexity Low_complexity 1 50 0 7962 27 0 0 chr3 209599429 209601159 -8435999 - L1PA3 LINE L1 0 6155 4444 2272 26 0 0 chr3 209601159 209601428 -8435730 + L1PA3 LINE L1 4195 4463 -1683 2146 110 0 45 chr3 209603756 209604066 -8433092 + AluSx SINE Alu 1 296 -16 189 0 0 0 chr3 209604862 209604883 -8432275 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 232 303 34 22 chr3 209604905 209604994 -8432164 + MLT2F LTR ERVL 1 90 -573 * 1238 259 44 26 chr3 209604991 209605335 -8431823 + MLT2F LTR ERVL 271 620 -43 1653 268 41 50 chr3 209605396 209606060 -8431098 + ERVL-F LTR ERVL 5099 5756 -8 263 268 16 71 chr3 209606060 209606187 -8430971 + MLT2F LTR ERVL 1 120 -543 839 304 45 55 chr3 209606200 209606598 -8430560 - MLT2F LTR ERVL -163 500 107 301 191 32 16 chr3 209606597 209606660 -8430498 + MLT2F LTR ERVL 515 578 -85 * 1474 215 44 94 chr3 209606794 209607292 -8429866 - MLT1E1 LTR MaLR -181 473 1 300 291 111 26 chr3 209607355 209607472 -8429686 - MLT1H1 LTR MaLR -281 274 164 267 346 39 6 chr3 209607736 209607915 -8429243 + L1M4 LINE L1 3962 4146 -2000 442 269 17 4 chr3 209608140 209608255 -8428903 + MLT1E2 LTR MaLR 317 464 -190 27 62 0 0 chr3 209609307 209609355 -8427803 + AT_rich Low_complexity Low_complexity 1 48 0 551 93 13 0 chr3 209609355 209609430 -8427728 - AluJb SINE Alu -23 289 214 2257 102 0 0 chr3 209609468 209609763 -8427395 + AluSq SINE Alu 11 305 -8 661 257 6 34 chr3 209609839 209610018 -8427140 - AluJb SINE Alu -97 215 42 195 309 182 18 chr3 209610189 209610299 -8426859 - L2 LINE L2 -4 3268 3141 183 286 51 31 chr3 209610594 209610692 -8426466 - MIR SINE MIR -51 211 112 634 272 50 5 chr3 209610697 209610899 -8426259 - MIR SINE MIR -1 261 51 1227 272 97 42 chr3 209611447 209611944 -8425214 + L1ME LINE L1 6 529 -5541 517 266 15 25 chr3 209611992 209612195 -8424963 + L1ME LINE L1 671 871 -5199 21 0 0 0 chr3 209612854 209612875 -8424283 + AT_rich Low_complexity Low_complexity 1 21 0 1901 198 91 42 chr3 209613750 209614174 -8422984 + MLT2B1 LTR ERVL 1 403 -117 330 26 0 0 chr3 209614174 209614213 -8422945 + (TG)n Simple_repeat Simple_repeat 2 40 0 1901 198 91 42 chr3 209614213 209614239 -8422919 + MLT2B1 LTR ERVL 403 426 -94 639 52 31 0 chr3 209614239 209614335 -8422823 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 1901 198 91 42 chr3 209614335 209614379 -8422779 + MLT2B1 LTR ERVL 426 520 0 2104 179 25 33 chr3 209614404 209614972 -8422186 - MLT2A2 LTR ERVL 0 554 1 967 250 21 33 chr3 209614945 209615185 -8421973 - MER8 DNA MER2_type -1 238 2 * 430 353 64 8 chr3 209615343 209615578 -8421580 + MIR SINE MIR 2 249 -13 188 213 43 0 chr3 209617443 209617490 -8419668 - L2 LINE L2 -2455 859 811 209 264 71 64 chr3 209617790 209617930 -8419228 - L2 LINE L2 -5 3308 3168 2110 110 7 7 chr3 209618397 209618696 -8418462 - AluSq SINE Alu -14 299 1 622 293 12 0 chr3 209620022 209620189 -8416969 + MER5B DNA MER1_type 4 172 -6 2736 129 7 5 chr3 209621731 209622158 -8415000 - MSTA LTR MaLR 0 428 1 346 240 215 25 chr3 209622759 209622880 -8414278 - MER5A DNA MER1_type 0 189 46 446 269 120 60 chr3 209622966 209623133 -8414025 - MER5B DNA MER1_type -1 177 1 741 251 6 6 chr3 209623155 209623330 -8413828 + MER5B DNA MER1_type 3 177 -1 207 274 55 0 chr3 209623857 209623930 -8413228 + MIR SINE MIR 107 183 -79 1494 123 0 14 chr3 209624976 209625187 -8411971 - AluSg SINE Alu -102 208 1 557 312 73 19 chr3 209625203 209625408 -8411750 - MIR SINE MIR -26 236 21 430 376 79 25 chr3 209626142 209626421 -8410737 - L2 LINE L2 -14 3258 2965 244 320 107 10 chr3 209626397 209626500 -8410658 + L2 LINE L2 3160 3272 0 * 526 222 114 59 chr3 209626515 209626814 -8410344 + MER31B LTR ERV1 1 371 -95 23 92 0 0 chr3 209627039 209627104 -8410054 + AT_rich Low_complexity Low_complexity 1 65 0 313 285 134 44 chr3 209627116 209627414 -8409744 - L1M4 LINE L1 -986 5160 4836 180 258 30 91 chr3 209627419 209627485 -8409673 - MIR3 SINE MIR -28 180 119 1306 132 39 0 chr3 209627588 209627792 -8409366 - THE1B LTR MaLR -152 212 1 304 352 67 11 chr3 209628078 209628257 -8408901 + MIR SINE MIR 3 191 -71 793 142 26 58 chr3 209628554 209628667 -8408491 + MSTD LTR MaLR 1 109 -287 2023 123 20 78 chr3 209628667 209629065 -8408093 - THE1C LTR MaLR 0 375 1 793 142 26 58 chr3 209629065 209629106 -8408052 + MSTD LTR MaLR 109 150 -246 21 0 0 0 chr3 209629729 209629750 -8407408 + AT_rich Low_complexity Low_complexity 1 21 0 758 178 0 0 chr3 209629822 209629957 -8407201 - L1MB5 LINE L1 -8 6166 6032 1799 166 11 3 chr3 209630009 209630293 -8406865 - AluJb SINE Alu -26 286 1 2095 125 0 3 chr3 209730550 209730838 -8306320 + AluSx SINE Alu 2 288 -24 746 236 47 24 chr3 209730987 209731199 -8305959 + MIR SINE MIR 46 262 0 1783 169 3 0 chr3 209731881 209732182 -8304976 - AluJb SINE Alu -10 302 1 730 171 16 24 chr3 209732492 209732615 -8304543 - FRAM SINE Alu -54 122 1 21 71 0 0 chr3 209732897 209732939 -8304219 + AT_rich Low_complexity Low_complexity 1 42 0 264 186 28 14 chr3 209732964 209733109 -8304049 + (TA)n Simple_repeat Simple_repeat 1 147 0 267 269 158 35 chr3 209733113 209733284 -8303874 - MIR SINE MIR -55 207 16 * 530 272 59 55 chr3 209733218 209733472 -8303686 + L2 LINE L2 1166 1420 -1894 2250 125 0 3 chr3 209733475 209733786 -8303372 + AluSx SINE Alu 1 310 -2 266 270 46 46 chr3 209734254 209734373 -8302785 + MIR SINE MIR 36 145 -63 2028 141 0 0 chr3 209735092 209735407 -8301751 - AluSx SINE Alu 0 315 1 1739 182 0 32 chr3 209735633 209735946 -8301212 - AluJo SINE Alu -9 303 1 1034 251 50 16 chr3 209735947 209736270 -8300888 - L1M4 LINE L1 -1818 4328 3995 259 258 34 45 chr3 209737386 209737475 -8299683 + L2 LINE L2 3184 3271 -1 365 228 0 0 chr3 209737784 209737863 -8299295 - L1MA10 LINE L1 -2 6332 6254 723 164 0 0 chr3 209739232 209739336 -8297822 + FLAM_C SINE Alu 22 125 -18 1292 238 10 20 chr3 209739375 209739669 -8297489 + AluJb SINE Alu 5 295 -17 2274 117 13 0 chr3 209739703 209740011 -8297147 + AluSx SINE Alu 1 312 0 318 269 0 82 chr3 209740768 209740891 -8296267 - MIR SINE MIR -75 133 20 205 376 32 40 chr3 209740886 209741011 -8296147 + L2 LINE L2 3087 3210 -62 * 7046 92 8 11 chr3 209741907 209742902 -8294256 - L1P LINE L1 -5111 1035 44 406 333 63 0 chr3 209743493 209743652 -8293506 - MIR SINE MIR 0 262 94 1200 163 5 5 chr3 209743712 209743921 -8293237 - L1MB1 LINE L1 0 6168 5960 650 127 15 75 chr3 209743925 209744059 -8293099 - MSTB LTR MaLR -300 126 1 238 269 0 0 chr3 209744128 209744180 -8292978 + MIR SINE MIR 48 99 -163 344 341 69 35 chr3 209744482 209744743 -8292415 + MLT1E LTR MaLR 1 270 -323 2345 115 13 10 chr3 209745664 209746048 -8291110 - L1PA5 LINE L1 -1 6153 5769 454 313 95 29 chr3 209746367 209746610 -8290548 + MIR SINE MIR 3 261 -1 249 258 32 75 chr3 209746891 209746984 -8290174 - MER58C DNA MER1_type 0 215 127 578 268 8 4 chr3 209747055 209747321 -8289837 + C-rich Low_complexity Low_complexity 1 267 0 1340 159 62 23 chr3 209747459 209747716 -8289442 - AluJo SINE Alu -31 281 15 198 267 80 13 chr3 209747723 209747798 -8289360 + L2 LINE L2 2632 2711 -603 391 204 11 0 chr3 209747806 209747894 -8289264 + L1MA6 LINE L1 6211 6299 -1 515 202 57 21 chr3 209747903 209748090 -8289068 + L1ME2 LINE L1 5718 5909 -257 385 96 43 200 chr3 209748744 209748811 -8288347 + L1MB5 LINE L1 6078 6154 -20 1851 109 23 0 chr3 209748811 209749076 -8288082 + AluSx SINE Alu 6 276 -36 276 30 0 0 chr3 209749084 209749117 -8288041 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 385 96 43 200 chr3 209749117 209749155 -8288003 + L1MB5 LINE L1 6162 6174 0 1161 253 4 0 chr3 209849820 209850057 -8187101 - AluJo SINE Alu -72 240 3 411 292 24 59 chr3 209850068 209850356 -8186802 - L1MCc LINE L1 -1772 5169 4892 1667 176 14 14 chr3 209850383 209850672 -8186486 - AluJo SINE Alu -23 289 1 681 143 17 25 chr3 209850702 209850821 -8186337 - FLAM_C SINE Alu -15 118 1 1160 303 29 6 chr3 209850829 209851353 -8185805 - L1MCc LINE L1 -2055 4886 4351 993 268 73 9 chr3 209851357 209851783 -8185375 - L1MCc LINE L1 -3289 3652 3200 484 291 7 33 chr3 209852115 209852266 -8184892 - L1MCc LINE L1 -5900 523 377 750 261 33 4 chr3 209852280 209852556 -8184602 - L1MCc LINE L1 -6109 314 31 225 0 0 0 chr3 209852739 209852764 -8184394 + (CA)n Simple_repeat Simple_repeat 2 26 0 22 56 0 0 chr3 209852922 209852958 -8184200 + AT_rich Low_complexity Low_complexity 1 36 0 195 328 50 55 chr3 209853447 209853648 -8183510 + MIR SINE MIR 32 231 -31 2333 89 0 7 chr3 209853700 209854045 -8183113 + AluSx SINE Alu 1 312 0 306 337 78 55 chr3 209854776 209855174 -8181984 + L2 LINE L2 2256 2662 -652 23 0 0 0 chr3 209855342 209855365 -8181793 + AT_rich Low_complexity Low_complexity 1 23 0 354 96 0 40 chr3 209855588 209855641 -8181517 - AluSg SINE Alu -2 300 271 1578 96 0 0 chr3 209855641 209855838 -8181320 - AluSg SINE Alu -113 197 1 354 96 0 40 chr3 209855838 209855862 -8181296 - AluSg SINE Alu -31 271 248 400 265 50 21 chr3 209858250 209858562 -8178596 - L1MC5 LINE L1 -393 7415 7261 404 299 37 70 chr3 209860395 209860636 -8176522 - L1ME LINE L1 -5616 454 222 222 118 0 0 chr3 209860979 209861013 -8176145 + (T)n Simple_repeat Simple_repeat 1 34 0 320 285 113 21 chr3 209861026 209861212 -8175946 - L1ME LINE L1 -337 5784 5582 2131 103 3 7 chr3 209861659 209861951 -8175207 + AluSx SINE Alu 1 291 -21 523 306 120 35 chr3 209861963 209862293 -8174865 + L2 LINE L2 2700 3093 -220 2095 203 83 4 chr3 209862293 209862761 -8174397 - LTR22 LTR ERVK -4 505 1 523 306 120 35 chr3 209862761 209862955 -8174203 + L2 LINE L2 3093 3269 -44 305 298 139 23 chr3 209863017 209863232 -8173926 - L1ME4a LINE L1 -92 6029 5790 23 54 0 0 chr3 209863542 209863579 -8173579 + AT_rich Low_complexity Low_complexity 1 37 0 34 24 0 0 chr3 209863825 209863866 -8173292 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chr3 209863916 209863940 -8173218 + AT_rich Low_complexity Low_complexity 1 24 0 2503 87 95 5 chr3 209864617 209865018 -8172140 - LTR7 LTR ERV1 -13 437 1 25 31 0 0 chr3 209865327 209865359 -8171799 + AT_rich Low_complexity Low_complexity 1 32 0 11083 64 4 6 chr3 209865589 209867049 -8170109 + HERV17 LTR ERV1 4560 6017 -2609 261 103 0 0 chr3 209867044 209867083 -8170075 + HERV17 LTR ERV1 7510 7548 -1078 * 2219 72 0 0 chr3 209867073 209867365 -8169793 + HERV17 LTR ERV1 8335 8626 0 2306 49 31 31 chr3 209867365 209867691 -8169467 + LTR17 LTR ERV1 1 326 -454 23 0 0 0 chr3 209867691 209867714 -8169444 + AT_rich Low_complexity Low_complexity 1 23 0 3375 69 2 7 chr3 209868358 209868808 -8168350 - LTR7 LTR ERV1 -2 448 1 2345 82 45 13 chr3 209868808 209869186 -8167972 - HERVH LTR ERV1 0 7713 7324 1254 148 19 0 chr3 209869186 209869402 -8167756 - HERVH LTR ERV1 -1894 5819 5600 4105 145 1 1 chr3 209869403 209870065 -8167093 - HERVH LTR ERV1 -2564 5149 4488 16094 132 38 53 chr3 209870067 209874024 -8163134 - HERVH LTR ERV1 -3720 3993 1 3396 71 0 7 chr3 209874026 209874477 -8162681 - LTR7 LTR ERV1 -2 448 1 186 305 34 0 chr3 209874807 209874866 -8162292 - L2 LINE L2 -39 3233 3173 705 56 0 0 chr3 209874924 209875014 -8162144 - L1PA11 LINE L1 -16 6158 6069 2311 87 0 3 chr3 209875439 209875749 -8161409 - AluY SINE Alu -2 309 1 2238 240 64 43 chr3 209876157 209877860 -8159298 - L1ME1 LINE L1 -7 6093 4361 225 222 34 34 chr3 209877906 209878082 -8159076 + (TA)n Simple_repeat Simple_repeat 1 176 0 189 119 0 51 chr3 209878099 209878158 -8159000 + (TA)n Simple_repeat Simple_repeat 1 56 0 489 219 62 39 chr3 209878296 209878552 -8158606 - L1M4 LINE L1 -1568 4578 4317 1002 271 75 66 chr3 209878714 209879204 -8157954 - L1ME1 LINE L1 -4579 1501 1017 2385 91 7 0 chr3 209879204 209879512 -8157646 - AluSg SINE Alu 0 310 1 1002 271 75 66 chr3 209879512 209880489 -8156669 - L1ME1 LINE L1 -5063 1017 3 1659 173 53 20 chr3 209880744 209881102 -8156056 + THE1C LTR MaLR 6 375 0 433 361 30 11 chr3 209881103 209881369 -8155789 + MLT1I LTR MaLR 120 390 -19 5470 44 15 4 chr3 209881484 209882167 -8154991 + L1PA3 LINE L1 5463 6152 -3 1202 197 107 56 chr3 209882587 209882962 -8154196 - MSTD LTR MaLR 0 396 3 233 320 41 71 chr3 209883007 209883204 -8153954 + MLT1I LTR MaLR 197 387 -22 32 26 0 0 chr3 209883922 209883961 -8153197 + AT_rich Low_complexity Low_complexity 1 39 0 2265 105 0 0 chr3 209884627 209884921 -8152237 - AluSx SINE Alu -18 294 1 2202 104 3 0 chr3 209885346 209885665 -8151493 - AluSp SINE Alu 0 313 3 2131 139 0 0 chr3 209885676 209885986 -8151172 - AluSx SINE Alu -2 310 1 212 266 48 29 chr3 209886200 209886326 -8150832 + MIR SINE MIR 88 212 -50 5705 127 10 1 chr3 209887114 209888678 -8148480 + L1PA16 LINE L1 4600 6154 -12 25 0 0 0 chr3 209888678 209888703 -8148455 + AT_rich Low_complexity Low_complexity 1 25 0 25 51 0 0 chr3 209888927 209888966 -8148192 + AT_rich Low_complexity Low_complexity 1 39 0 248 200 0 15 chr3 209889044 209889109 -8148049 + L1PB1 LINE L1 5944 6007 -144 467 145 0 0 chr3 209889120 209889196 -8147962 - L1PA15 LINE L1 -259 5906 5831 871 162 74 4 chr3 209889246 209889475 -8147683 - L1 LINE L1 -2715 3431 3187 424 307 78 57 chr3 209889585 209889969 -8147189 + L2 LINE L2 2606 2999 -273 2413 64 0 0 chr3 209890638 209890936 -8146222 + AluY SINE Alu 4 301 -10 297 355 41 36 chr3 209890937 209891157 -8146001 - L2 LINE L2 -273 3040 2820 371 287 57 0 chr3 209892224 209892346 -8144812 - MIR3 SINE MIR -38 170 42 1989 139 3 32 chr3 209892405 209892715 -8144443 + AluSc SINE Alu 1 301 -8 246 149 0 0 chr3 209893285 209893301 -8143857 + (T)n Simple_repeat Simple_repeat 1 16 -31 2100 60 26 0 chr3 209893301 209893566 -8143592 - AluY SINE Alu -39 272 1 246 149 0 0 chr3 209893566 209893596 -8143562 + (T)n Simple_repeat Simple_repeat 15 47 0 235 346 8 46 chr3 209893714 209893844 -8143314 - MIR SINE MIR -44 218 94 2480 60 0 25 chr3 209897127 209897446 -8139712 + AluY SINE Alu 1 311 0 291 93 0 0 chr3 209897761 209897804 -8139354 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 36 0 0 chr3 209898370 209898398 -8138760 + AT_rich Low_complexity Low_complexity 1 28 0 317 238 34 129 chr3 209898507 209898654 -8138504 + L2 LINE L2 2922 3054 -259 256 356 29 0 chr3 209898727 209898831 -8138327 + L2 LINE L2 3207 3313 0 315 299 11 23 chr3 209898950 209899037 -8138121 + L2 LINE L2 3179 3264 -8 4540 82 22 14 chr3 209899471 209900115 -8137043 - L1PA10 LINE L1 0 6168 5520 1777 100 0 0 chr3 209900115 209900346 -8136812 + AluY SINE Alu 1 231 -80 4716 252 38 19 chr3 209900465 209902857 -8134301 + L1PA15 LINE L1 1965 4539 -3045 5107 156 10 15 chr3 209902861 209904303 -8132855 + L1PA15 LINE L1 6173 7603 0 251 236 0 101 chr3 209904345 209904434 -8132724 - MIR SINE MIR 0 262 183 235 426 19 23 chr3 209905250 209905508 -8131650 + L2 LINE L2 342 598 -2716 550 158 0 30 chr3 209905749 209905850 -8131308 + MER4A LTR ERV1 1 98 -566 1765 133 3 75 chr3 209905854 209906222 -8130936 + MER4A LTR ERV1 265 664 0 960 275 67 35 chr3 209906483 209906799 -8130359 - MLT1G3 LTR MaLR 0 590 200 1556 171 70 40 chr3 209906800 209907040 -8130118 - THE1B LTR MaLR 0 364 110 4824 98 20 3 chr3 209907040 209907748 -8129410 + LTR30 LTR ERV1 3 722 0 1556 171 70 40 chr3 209907748 209907834 -8129324 - THE1B LTR MaLR -254 110 28 11032 109 11 2 chr3 209907836 209909401 -8127757 - THE1B-int LTR MaLR 0 1580 1 1939 138 44 41 chr3 209909401 209909764 -8127394 - THE1B LTR MaLR 0 364 1 643 296 26 30 chr3 209909764 209909991 -8127167 - MLT1G LTR MaLR -322 268 44 1401 236 232 14 chr3 209910191 209910695 -8126463 + MLT1E1 LTR MaLR 41 654 0 987 241 36 32 chr3 209910744 209910993 -8126165 + MLT1E1 LTR MaLR 405 654 0 314 328 99 12 chr3 209911343 209911514 -8125644 + L1ME LINE L1 139 324 -5881 961 194 153 0 chr3 209912376 209912644 -8124514 + MER33 DNA MER1_type 15 323 -1 304 267 102 23 chr3 209912662 209912838 -8124320 + L1ME LINE L1 1137 1326 -5070 587 324 26 10 chr3 209912885 209913194 -8123964 + L1ME LINE L1 1498 1811 -4585 529 258 145 7 chr3 209913488 209913927 -8123231 + L1ME LINE L1 2175 2633 -3582 303 326 44 52 chr3 209916105 209916240 -8120918 - L2 LINE L2 0 3272 3139 3992 70 2 21 chr3 209916404 209916935 -8120223 + LTR17 LTR ERV1 260 780 0 8869 166 57 72 chr3 209916935 209919308 -8117850 + HERV17 LTR ERV1 1 2338 -6288 * 10870 58 14 1 chr3 209919306 209920660 -8116498 + HERV17 LTR ERV1 2741 4111 -4515 318 340 46 13 chr3 209920946 209921099 -8116059 - MIR SINE MIR -55 207 50 1510 271 29 41 chr3 209921542 209922025 -8115133 + MLT1E LTR MaLR 50 526 -67 183 299 0 65 chr3 209922521 209922598 -8114560 + MIR SINE MIR 185 256 -6 230 299 0 0 chr3 209923099 209923166 -8113992 + GA-rich Low_complexity Low_complexity 3 69 0 1145 327 45 58 chr3 209923773 209924890 -8112268 - L1PA12 LINE L1 -5554 2027 123 603 173 0 0 chr3 209925748 209925852 -8111306 + L1P3 LINE L1 5428 5531 -641 25 31 0 0 chr3 209925976 209926008 -8111150 + GC_rich Low_complexity Low_complexity 1 32 0 1966 212 17 17 chr3 209926211 209926677 -8110481 - L1P LINE L1 -3420 2726 2261 1842 182 35 3 chr3 209926679 209927020 -8110138 - THE1B LTR MaLR -8 356 5 300 53 0 0 chr3 209927037 209927075 -8110083 + (CA)n Simple_repeat Simple_repeat 2 39 0 229 182 10 101 chr3 209927075 209927174 -8109984 - L1MC4 LINE L1 -1339 6703 6614 2057 126 83 6 chr3 209927853 209928201 -8108957 + THE1C LTR MaLR 1 375 0 297 338 90 30 chr3 209928234 209928367 -8108791 + L2 LINE L2 3132 3272 0 2120 129 9 3 chr3 209928855 209929187 -8107971 - L1PA15 LINE L1 -1 6164 5831 3190 203 13 11 chr3 209929193 209929908 -8107250 - L1 LINE L1 -1089 5057 4342 21 0 0 0 chr3 209929973 209929994 -8107164 + AT_rich Low_complexity Low_complexity 1 21 0 364 239 63 0 chr3 209930850 209930992 -8106166 - L1MC4 LINE L1 -1853 5955 5805 2299 83 0 16 chr3 209930994 209931308 -8105850 + AluSc SINE Alu 1 309 0 184 347 14 0 chr3 209931557 209931629 -8105529 - L2 LINE L2 -9 3263 3191 5009 93 1 0 chr3 209932837 209933546 -8103612 - L1P LINE L1 -3027 3119 2410 6797 63 8 2 chr3 209933547 209935017 -8102141 + L1PA7 LINE L1 4687 6152 -2 2620 245 30 19 chr3 209935167 209935837 -8101321 + L1ME LINE L1 15 691 -5851 2550 191 31 48 chr3 209935835 209936505 -8100653 + L1ME LINE L1 5147 5805 -839 * 2208 101 10 0 chr3 209937150 209937448 -8099710 + AluSx SINE Alu 1 301 -11 2624 49 0 0 chr3 209937646 209937953 -8099205 + AluY SINE Alu 2 308 -3 387 0 0 0 chr3 209938271 209938314 -8098844 + (TA)n Simple_repeat Simple_repeat 2 44 0 2201 101 0 22 chr3 209938520 209938882 -8098276 - AluSx SINE Alu 0 355 1 2398 70 3 10 chr3 209939737 209940050 -8097108 - AluY SINE Alu 0 311 1 485 300 61 30 chr3 209940274 209940667 -8096491 + L1ME LINE L1 5817 6213 -455 184 310 28 14 chr3 209940906 209940977 -8096181 - MIR SINE MIR -109 153 82 321 341 24 41 chr3 209941011 209941181 -8095977 - L1MEd LINE L1 -2308 3821 3655 528 261 74 39 chr3 209941471 209941861 -8095297 - L1MEd LINE L1 -3452 2677 2274 3128 91 0 0 chr3 209941921 209942359 -8094799 - L1PA7 LINE L1 -780 5366 4929 6199 60 5 2 chr3 209942359 209943134 -8094024 + L1PA7 LINE L1 5366 6153 -1 203 255 0 0 chr3 209943166 209943217 -8093941 + MIR SINE MIR 201 251 -11 434 284 85 24 chr3 209943225 209943436 -8093722 + MIR SINE MIR 3 226 -36 874 306 166 17 chr3 209943530 209944013 -8093145 - MLT1H1 LTR MaLR 0 555 1 415 252 110 31 chr3 209944433 209944734 -8092424 - L1MEd LINE L1 -4840 1289 989 439 323 66 57 chr3 209944757 209945107 -8092051 - L1MEd LINE L1 -5323 796 444 427 218 8 75 chr3 209945477 209945610 -8091548 - MER112 DNA MER1_type -38 222 99 195 281 0 0 chr3 209945625 209945707 -8091451 + CT-rich Low_complexity Low_complexity 1 82 0 189 262 0 107 chr3 209946816 209946859 -8090299 + MIR SINE MIR 112 143 -119 2825 178 8 0 chr3 209946859 209947331 -8089827 + MER66A LTR ERV1 3 478 0 189 262 0 107 chr3 209947331 209947371 -8089787 + MIR SINE MIR 143 186 -76 405 282 35 14 chr3 209947482 209947624 -8089534 + MIR SINE MIR 112 256 -6 2451 66 3 3 chr3 209948697 209949000 -8088158 + AluY SINE Alu 1 303 -8 348 324 7 28 chr3 209949186 209949328 -8087830 - L2 LINE L2 -2 3311 3173 362 211 114 9 chr3 209949496 209949610 -8087548 + MLT1E LTR MaLR 468 593 0 881 288 87 48 chr3 209949934 209950371 -8086787 - LTR16B LTR ERVL -6 458 5 2292 258 48 29 chr3 209952527 209953325 -8083833 - L1ME1 LINE L1 -5 6161 5316 1765 161 25 3 chr3 209953325 209953611 -8083547 + AluJb SINE Alu 1 292 -20 2292 258 48 29 chr3 209953611 209954330 -8082828 - L1ME1 LINE L1 -850 5316 4613 1405 213 20 0 chr3 209954337 209954638 -8082520 - L1M3 LINE L1 -507 5664 5358 1763 244 24 19 chr3 209954638 209955106 -8082052 - L1M3 LINE L1 -1001 5145 4676 2552 174 18 12 chr3 209955107 209955595 -8081563 + L1MB1 LINE L1 5672 6162 -6 669 161 11 35 chr3 209955597 209955964 -8081194 + GA-rich Low_complexity Low_complexity 1 358 0 37 39 0 0 chr3 209956318 209956369 -8080789 + AT_rich Low_complexity Low_complexity 1 51 0 398 300 5 21 chr3 209956376 209956566 -8080592 - L1M3 LINE L1 -1535 4611 4425 320 237 32 0 chr3 209956600 209956693 -8080465 - L1MD3 LINE L1 -8 7987 7892 1446 291 34 35 chr3 209956700 209957442 -8079716 + L1MEc LINE L1 339 1079 -5317 4052 247 52 37 chr3 209957543 209958707 -8078451 + L1MDa LINE L1 17 1198 -5342 8742 221 51 43 chr3 209958714 209960869 -8076289 + L1MA4A LINE L1 140 2278 -4930 213 65 0 0 chr3 209960869 209960900 -8076258 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 8742 221 51 43 chr3 209960900 209963923 -8073235 + L1MA4A LINE L1 2278 5354 -1854 1821 204 167 79 chr3 209963925 209964702 -8072456 + LTR28 LTR ERV1 1 982 -38 432 257 38 34 chr3 209964700 209964841 -8072317 + LTR28 LTR ERV1 676 1016 0 * 5358 162 43 34 chr3 209964841 209964948 -8072210 + L1MA4A LINE L1 5353 5458 -1907 180 0 0 0 chr3 209964948 209964968 -8072190 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 5358 162 43 34 chr3 209964968 209965118 -8072040 + L1MA4A LINE L1 5458 5605 -1760 2605 52 0 0 chr3 209965118 209965427 -8071731 + AluY SINE Alu 1 309 -2 5358 162 43 34 chr3 209965427 209966838 -8070320 + L1MA4A LINE L1 5605 7056 -309 396 0 0 0 chr3 209966838 209966882 -8070276 + (TG)n Simple_repeat Simple_repeat 1 44 0 5358 162 43 34 chr3 209966882 209967182 -8069976 + L1MA4A LINE L1 7056 7352 -13 334 224 129 9 chr3 209967252 209967368 -8069790 + L1ME1 LINE L1 5870 5999 -167 2541 73 6 9 chr3 209967408 209967750 -8069408 - LTR6B LTR ERV1 0 558 218 356 136 24 48 chr3 209967746 209967830 -8069328 - LTR6B LTR ERV1 -431 127 1 * 308 275 0 0 chr3 209967832 209967912 -8069246 + L1MA10 LINE L1 6191 6270 -64 591 279 0 0 chr3 209967913 209968053 -8069105 + FLAM_A SINE Alu 1 140 -2 238 154 108 0 chr3 209968054 209968119 -8069039 + L1MA10 LINE L1 6260 6331 -3 585 317 109 53 chr3 209968135 209968538 -8068620 - L1M2 LINE L1 -888 1650 61 23 54 0 0 chr3 209968904 209968941 -8068217 + AT_rich Low_complexity Low_complexity 1 37 0 421 305 6 23 chr3 209969040 209969214 -8067944 + L1MCc LINE L1 25 195 -6228 1537 186 52 64 chr3 209969227 209969776 -8067382 - MER67C LTR ERV1 -8 506 1 536 136 16 34 chr3 209969932 209970043 -8067115 - THE1C LTR MaLR -285 90 1 1853 151 30 14 chr3 209970043 209970527 -8066631 - L1M3 LINE L1 -712 5471 4979 1781 251 119 6 chr3 209971482 209972028 -8065130 + MLT1E2 LTR MaLR 17 624 -2 1945 205 43 36 chr3 209972150 209972645 -8064513 - MLT1D LTR MaLR -2 622 3 455 213 19 0 chr3 209973582 209973690 -8063468 - L1MA10 LINE L1 -5 6329 6220 2406 64 0 16 chr3 209973919 209974232 -8062926 - AluY SINE Alu -3 308 1 332 40 0 20 chr3 209974427 209974477 -8062681 - L1PA4 LINE L1 -244 5911 5863 1891 22 9 4 chr3 209974477 209974707 -8062451 + L1PA4 LINE L1 5924 6155 0 264 350 30 13 chr3 209974716 209974862 -8062296 + MIR3 SINE MIR 2 151 -69 511 297 59 39 chr3 209975117 209975403 -8061755 - L1ME LINE L1 -386 5784 5493 21 0 0 0 chr3 209975430 209975451 -8061707 + AT_rich Low_complexity Low_complexity 1 21 0 226 244 64 0 chr3 209975451 209975529 -8061629 - L1MA10 LINE L1 -8 6326 6244 258 291 0 13 chr3 209975561 209975584 -8061574 - L1MA10 LINE L1 -83 6251 6229 1504 272 43 30 chr3 209975584 209976124 -8061034 - L1ME1 LINE L1 -96 6139 5593 1485 246 60 42 chr3 209976127 209976813 -8060345 - L1ME1 LINE L1 -859 5356 4659 2444 199 47 9 chr3 209976825 209977428 -8059730 + MER21B LTR ERV1 1 700 -163 1412 204 52 50 chr3 209977428 209977870 -8059288 - MER65A LTR ERV1 0 445 3 2444 199 47 9 chr3 209977870 209977923 -8059235 + MER21B LTR ERV1 700 750 -113 699 196 50 180 chr3 209978038 209978493 -8058665 - MER68 LTR ERV1 -166 396 1 458 275 96 0 chr3 209978495 209978724 -8058434 - L1ME1 LINE L1 -2168 4047 3797 895 258 80 42 chr3 209978743 209979445 -8057713 - L1ME1 LINE L1 -3528 2687 1999 874 242 56 16 chr3 209979451 209979703 -8057455 - L1ME1 LINE L1 -5749 647 386 1957 218 39 25 chr3 209979808 209980295 -8056863 - MLT1D LTR MaLR -3 502 9 621 321 8 21 chr3 209980296 209980533 -8056625 - L1ME1 LINE L1 -6121 275 42 22 35 0 0 chr3 209980685 209980714 -8056444 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr3 209980796 209980833 -8056325 + AT_rich Low_complexity Low_complexity 1 37 0 261 320 102 0 chr3 209980862 209981059 -8056099 - L1M4 LINE L1 -1052 5094 4878 241 206 0 52 chr3 209981103 209981200 -8055958 - L1MCa LINE L1 -4646 1569 1478 422 322 107 58 chr3 209981264 209981987 -8055171 - L1MCa LINE L1 -4924 1472 715 851 268 166 5 chr3 209982810 209983190 -8053968 + LTR50 LTR ERVL 353 793 -2 205 369 81 44 chr3 209984564 209984606 -8052552 - L3 LINE CR1 -1 1576 1537 1644 194 107 83 chr3 209984606 209985235 -8051923 - LTR48B LTR ERV1 0 644 1 205 369 81 44 chr3 209985235 209985536 -8051622 - L3 LINE CR1 -40 1537 1220 229 327 9 18 chr3 209986435 209986545 -8050613 + MLT1J2 LTR MaLR 101 209 -241 2237 110 0 0 chr3 209986956 209987255 -8049903 - AluSg SINE Alu -11 299 1 610 245 56 26 chr3 209987716 209988036 -8049122 + MER93b LTR ERV1 12 373 0 * 1703 255 75 41 chr3 209988036 209988613 -8048545 - MLT1E2 LTR MaLR -29 597 1 258 209 0 0 chr3 209988653 209988696 -8048462 - tRNA-Glu-GAG tRNA tRNA -32 43 1 21207 74 5 0 chr3 209988702 209992352 -8044806 + L1PA6 LINE L1 2497 6154 0 5657 96 13 16 chr3 209992360 209993214 -8043944 - L1MA1 LINE L1 -9 6293 5443 4299 174 31 29 chr3 209993215 209993511 -8043647 - L1M1 LINE L1 -6225 1340 1046 1877 133 65 6 chr3 209993511 209993835 -8043323 - MER61A LTR ERV1 0 343 1 4299 174 31 29 chr3 209993835 209994335 -8042823 - L1M1 LINE L1 -6519 1046 542 1400 324 42 56 chr3 209994943 209996146 -8041012 - HERVI LTR ERV1 -138 6511 5326 331 245 21 21 chr3 209996591 209996685 -8040473 - HERVI LTR ERV1 -1818 4831 4738 1280 312 33 24 chr3 209996906 209997475 -8039683 - HERVI LTR ERV1 -2029 5756 5179 1873 119 44 48 chr3 209997475 209997769 -8039389 + AluSp SINE Alu 1 293 -20 1280 312 33 24 chr3 209997769 209997834 -8039324 - HERVI LTR ERV1 -2606 5179 5116 457 271 96 16 chr3 209997863 209998051 -8039107 - HERVI LTR ERV1 -2748 5037 4835 524 213 103 22 chr3 209998072 209998208 -8038950 - LTR18B LTR ERVL -115 499 353 917 339 39 21 chr3 209998217 209998840 -8038318 - HERVI LTR ERV1 -5858 1927 1294 553 360 3 3 chr3 209999031 209999317 -8037841 - HERVI LTR ERV1 -6782 1003 718 376 235 29 20 chr3 209999498 209999600 -8037558 - HERVI LTR ERV1 -6279 370 268 2146 210 45 36 chr3 210000293 210000821 -8036337 - L1M1 LINE L1 -7017 548 16 261 139 0 0 chr3 210001329 210001372 -8035786 + (TTTTC)n Simple_repeat Simple_repeat 4 46 0 293 291 49 22 chr3 210001807 210001965 -8035193 + MIR SINE MIR 30 193 -69 5468 114 36 2 chr3 210002486 210003774 -8033384 - L1PA10 LINE L1 -10 6158 4834 267 175 19 169 chr3 210004005 210004165 -8032993 + L1MC5 LINE L1 7760 7895 -66 25 31 0 0 chr3 210005166 210005198 -8031960 + AT_rich Low_complexity Low_complexity 1 32 0 250 204 23 23 chr3 210005912 210006000 -8031158 + GA-rich Low_complexity Low_complexity 4 91 0 297 306 91 67 chr3 210006339 210006548 -8030610 + L3 LINE CR1 1338 1551 -26 314 380 129 43 chr3 210007651 210008138 -8029020 - L3 LINE CR1 -5 1572 1044 1286 282 17 32 chr3 210008220 210008624 -8028534 + MLT1J2 LTR MaLR 22 419 -31 279 0 0 0 chr3 210009094 210009149 -8028009 + (CA)n Simple_repeat Simple_repeat 1 86 0 279 0 0 0 chr3 210009149 210009180 -8027978 + (CA)n Simple_repeat Simple_repeat 2 32 0 360 0 0 0 chr3 210010149 210010189 -8026969 + (TA)n Simple_repeat Simple_repeat 1 40 0 381 86 0 0 chr3 210010846 210010904 -8026254 + (TG)n Simple_repeat Simple_repeat 2 59 0 597 284 18 75 chr3 210011074 210011109 -8026049 - LTR16C LTR ERVL 0 491 456 2202 87 6 32 chr3 210011109 210011420 -8025738 + AluSc SINE Alu 1 303 -6 597 284 18 75 chr3 210011420 210011666 -8025492 - LTR16C LTR ERVL -35 456 226 2346 147 63 0 chr3 210011674 210012068 -8025090 - MSTA LTR MaLR -2 426 8 283 343 32 98 chr3 210012925 210013304 -8023854 - L2 LINE L2 0 3272 2919 479 358 40 18 chr3 210013971 210014245 -8022913 + LTR16A1 LTR ERVL 176 455 -2 540 289 94 0 chr3 210015432 210015633 -8021525 + L2 LINE L2 1799 2018 -1296 672 276 31 22 chr3 210015635 210015849 -8021309 + MLT1A2 LTR MaLR 121 429 -38 723 285 104 33 chr3 210016137 210016474 -8020684 + L2 LINE L2 2947 3307 -6 265 348 70 16 chr3 210016614 210016801 -8020357 + MIR SINE MIR 60 256 -6 21 0 0 0 chr3 210016938 210016959 -8020199 + AT_rich Low_complexity Low_complexity 1 21 0 201 121 0 0 chr3 210018387 210018420 -8018738 + (TA)n Simple_repeat Simple_repeat 1 33 0 219 146 0 0 chr3 210019113 210019154 -8018004 + (CAT)n Simple_repeat Simple_repeat 2 42 0 26 0 0 0 chr3 210019175 210019201 -8017957 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr3 210019484 210019514 -8017644 + AT_rich Low_complexity Low_complexity 1 30 0 10394 150 16 6 chr3 210019549 210022466 -8014692 - L1MA1 LINE L1 -10 7711 4764 618 196 166 102 chr3 210022685 210023125 -8014033 + LTR37B LTR ERV1 1 468 0 21 36 0 0 chr3 210023517 210023545 -8013613 + AT_rich Low_complexity Low_complexity 1 28 0 958 213 17 59 chr3 210023726 210023763 -8013395 - MLT2D LTR ERVL -2 412 375 272 27 27 0 chr3 210023763 210023800 -8013358 + (TG)n Simple_repeat Simple_repeat 2 39 0 958 213 17 59 chr3 210023800 210023834 -8013324 - MLT2D LTR ERVL -39 375 341 3792 80 4 0 chr3 210023834 210024346 -8012812 - L1PA8 LINE L1 0 6172 5659 958 213 17 59 chr3 210024346 210024512 -8012646 - MLT2D LTR ERVL -73 341 184 1543 193 7 0 chr3 210024512 210024792 -8012366 + L1 LINE L1 1084 1365 -6200 6028 133 14 12 chr3 210024793 210025830 -8011328 - L1MA1 LINE L1 -4596 2969 1931 1010 153 0 0 chr3 210025820 210025990 -8011168 + L1 LINE L1 5245 5414 -2151 * 183 139 0 0 chr3 210026315 210026351 -8010807 + (GA)n Simple_repeat Simple_repeat 2 37 0 1296 266 124 42 chr3 210026377 210026990 -8010168 - MLT2F LTR ERVL 0 663 1 5287 280 43 44 chr3 210026992 210028934 -8008224 - ERVL LTR ERVL -10 5754 3815 2361 221 82 22 chr3 210028934 210029901 -8007257 + L1MC2 LINE L1 4537 5590 -754 1574 178 0 68 chr3 210029901 210030222 -8006936 - AluJo SINE Alu -11 301 3 2361 221 82 22 chr3 210030222 210030521 -8006637 + L1MC2 LINE L1 5590 5869 -475 1069 238 88 44 chr3 210030522 210031106 -8006052 + MER76 LTR ERV 2 661 -27 2202 140 61 33 chr3 210031134 210031592 -8005566 + L1MC2 LINE L1 5865 6335 -9 818 281 56 37 chr3 210031677 210032074 -8005084 - ERVL LTR ERVL -1841 3644 3226 912 291 50 14 chr3 210032092 210032374 -8004784 - ERVL LTR ERVL -2547 3107 2816 768 311 86 53 chr3 210032373 210032898 -8004260 - ERVL LTR ERVL -1431 4333 3792 * 2436 113 2 65 chr3 210033141 210033541 -8003617 + THE1C LTR MaLR 1 375 0 9550 119 36 54 chr3 210033541 210034414 -8002744 + THE1C-int LTR MaLR 1 833 -747 1167 73 6 12 chr3 210034414 210034579 -8002579 + L1PA6 LINE L1 5991 6154 0 9550 119 36 54 chr3 210034579 210035314 -8001844 + THE1C-int LTR MaLR 833 1580 0 2362 116 30 11 chr3 210035316 210035677 -8001481 + THE1C LTR MaLR 3 370 -5 417 139 0 38 chr3 210035677 210035756 -8001402 - MADE1 DNA Mariner 0 80 5 1273 118 128 0 chr3 210036092 210036295 -8000863 - MER30 DNA MER1_type -1 229 1 206 372 21 0 chr3 210036699 210036793 -8000365 + L2 LINE L2 2841 2936 -377 2630 241 23 23 chr3 210037113 210037799 -7999359 - MER76 LTR ERV -2 686 1 2745 234 36 2 chr3 210037849 210038480 -7998678 - MER82 DNA MER2_type 0 653 1 1574 148 7 11 chr3 210038696 210038973 -7998185 + L1PA16 LINE L1 5891 6166 0 250 320 18 47 chr3 210039527 210039802 -7997356 - L1M4 LINE L1 -1095 5051 4785 297 0 0 0 chr3 210040095 210040128 -7997030 + (TTG)n Simple_repeat Simple_repeat 2 34 0 6859 110 27 2 chr3 210040268 210041238 -7995920 - THE1B-int LTR MaLR -586 994 1 2452 98 19 25 chr3 210041238 210041604 -7995554 - THE1B LTR MaLR 0 364 1 228 267 69 10 chr3 210042655 210042756 -7994402 + LTR67 LTR ERVL 440 546 -11 189 316 0 18 chr3 210043212 210043269 -7993889 + MIR3 SINE MIR 109 164 -44 21 36 0 0 chr3 210043435 210043463 -7993695 + AT_rich Low_complexity Low_complexity 1 28 0 2793 7 0 7 chr3 210043578 210043885 -7993273 + AluYa5 SINE Alu 1 305 -6 258 231 77 44 chr3 210044661 210044752 -7992406 - MLT1I LTR MaLR -254 155 62 2379 140 6 6 chr3 210045979 210046343 -7990815 - THE1B LTR MaLR 0 364 1 9835 116 37 39 chr3 210046343 210047927 -7989231 - THE1B-int LTR MaLR 0 1580 1 2348 134 14 0 chr3 210047927 210048286 -7988872 - THE1B LTR MaLR 0 364 1 334 345 123 20 chr3 210048335 210048732 -7988426 - MLT1J LTR MaLR -73 438 1 532 283 102 6 chr3 210048913 210049079 -7988079 + MIR SINE MIR 1 182 -80 258 286 0 0 chr3 210049080 210049157 -7988001 + (CA)n Simple_repeat Simple_repeat 2 78 0 305 300 117 67 chr3 210049528 210049974 -7987184 + L1M4 LINE L1 2938 3405 -2741 672 291 95 32 chr3 210050412 210051120 -7986038 + L1M4 LINE L1 4093 4844 -1302 195 42 0 0 chr3 210051125 210051149 -7986009 + (TA)n Simple_repeat Simple_repeat 2 25 0 1402 210 80 5 chr3 210051230 210051653 -7985505 - L1M4c LINE L1 -5289 1095 641 614 225 10 0 chr3 210051650 210051853 -7985305 + L1PA16 LINE L1 1566 1864 -4283 * 11689 227 15 12 chr3 210051858 210052195 -7984963 + L1PA16 LINE L1 2052 2387 -3779 1418 206 53 0 chr3 210052195 210052477 -7984681 + AluJb SINE Alu 3 299 -13 11689 227 15 12 chr3 210052477 210056247 -7980911 + L1PA16 LINE L1 2387 6166 0 1772 243 49 16 chr3 210056312 210057313 -7979845 + L1M4c LINE L1 2536 3571 -3277 6409 225 25 10 chr3 210057452 210058869 -7978289 + L1M3 LINE L1 678 2115 -4734 4826 245 40 20 chr3 210058866 210060297 -7976861 + L1M3 LINE L1 4382 5841 -1007 * 2828 236 74 107 chr3 210060288 210061718 -7975440 + L1M3e LINE L1 74 1456 -5574 * 1757 164 140 29 chr3 210061720 210062059 -7975099 - MSTA LTR MaLR 0 428 40 5438 77 32 4 chr3 210062059 210062804 -7974354 + MER4E LTR ERV1 1 766 0 1757 164 140 29 chr3 210062804 210062849 -7974309 - MSTA LTR MaLR -388 40 1 1753 236 10 43 chr3 210062876 210063331 -7973827 + L1M3e LINE L1 1646 2086 -4941 2095 122 10 7 chr3 210063331 210063635 -7973523 + AluSx SINE Alu 1 305 -7 1753 236 10 43 chr3 210063635 210063695 -7973463 + L1M3e LINE L1 2086 2146 -4881 808 187 71 29 chr3 210063708 210064006 -7973152 + L1M3 LINE L1 5872 6187 -695 3832 207 20 3 chr3 210064010 210064748 -7972410 + L1M1 LINE L1 12 762 -6803 1036 68 8 0 chr3 210064851 210064984 -7972174 + AluY SINE Alu 164 297 -14 322 260 73 53 chr3 210065041 210065191 -7971967 - L1M4 LINE L1 -2232 3914 3762 777 222 33 17 chr3 210065285 210065465 -7971693 - AluJo SINE Alu -10 302 120 225 211 0 0 chr3 210065718 210065775 -7971383 + (TTGG)n Simple_repeat Simple_repeat 4 60 0 462 18 0 0 chr3 210065926 210065981 -7971177 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 235 250 143 37 chr3 210065997 210066213 -7970945 + L1MC5 LINE L1 7539 7777 -184 1748 124 57 21 chr3 210066374 210066656 -7970502 - AluSc SINE Alu -17 292 1 1977 144 11 28 chr3 210066688 210067043 -7970115 - L1PA16 LINE L1 -4 6162 5814 1725 123 0 91 chr3 210067379 210067687 -7969471 + AluSq SINE Alu 1 280 -33 1668 241 39 24 chr3 210067816 210068281 -7968877 + MER99 DNA DNA 350 821 -7 237 319 22 67 chr3 210068397 210068532 -7968626 + MLT1L LTR MaLR 405 533 -82 1397 282 75 24 chr3 210068535 210069045 -7968113 - MLT1H LTR MaLR -2 547 12 216 0 0 0 chr3 210070429 210070453 -7966705 + (A)n Simple_repeat Simple_repeat 1 24 0 587 300 39 17 chr3 210070954 210071184 -7965974 - MIR SINE MIR 0 262 28 1764 171 15 16 chr3 210071768 210072131 -7965027 - MER47B DNA MER2_type -1 417 5 402 21 0 0 chr3 210072704 210072751 -7964407 + (TG)n Simple_repeat Simple_repeat 2 48 0 389 272 174 5 chr3 210073237 210073421 -7963737 - MIR SINE MIR -45 217 3 21 0 0 0 chr3 210073910 210073931 -7963227 + AT_rich Low_complexity Low_complexity 1 21 0 2094 124 0 17 chr3 210074048 210074210 -7962948 - AluSg SINE Alu -17 293 130 258 56 0 0 chr3 210074210 210074246 -7962912 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2057 58 40 18 chr3 210074246 210074520 -7962638 - AluY SINE Alu -31 280 1 2094 124 0 17 chr3 210074520 210074654 -7962504 - AluSg SINE Alu -178 132 1 192 336 34 25 chr3 210075396 210075515 -7961643 + L2 LINE L2 2869 2988 -284 21 89 0 0 chr3 210076914 210076970 -7960188 + AT_rich Low_complexity Low_complexity 1 56 0 200 339 70 0 chr3 210077214 210077329 -7959829 - MIR3 SINE MIR -3 205 83 234 298 157 0 chr3 210079054 210079175 -7957983 - MIR3 SINE MIR -3 205 66 1168 133 0 0 chr3 210079774 210079939 -7957219 + L1PA13 LINE L1 5917 6084 -79 207 0 0 0 chr3 210079939 210079962 -7957196 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1168 133 0 0 chr3 210079962 210079976 -7957182 + L1PA13 LINE L1 6083 6096 -67 1678 133 14 18 chr3 210079976 210080255 -7956903 + AluSx SINE Alu 21 298 -14 878 204 0 0 chr3 210080257 210080409 -7956749 + AluJo/FRAM SINE Alu 131 282 -30 395 237 149 18 chr3 210080448 210080562 -7956596 + MER45A DNA AcHobo 1 129 -49 435 146 0 0 chr3 210080848 210080930 -7956228 + L1PA13 LINE L1 6080 6161 -2 438 327 52 62 chr3 210081072 210081380 -7955778 + L1ME2 LINE L1 5328 5638 -526 2728 193 30 43 chr3 210081380 210081884 -7955274 + MLT2B3 LTR ERVL 1 499 -55 566 108 0 11 chr3 210081884 210081977 -7955181 + (TCTA)n Simple_repeat Simple_repeat 2 93 0 2728 193 30 43 chr3 210081977 210082033 -7955125 + MLT2B3 LTR ERVL 499 554 0 438 327 52 62 chr3 210082033 210082390 -7954768 + L1ME2 LINE L1 5638 5998 -166 327 252 379 0 chr3 210082529 210082735 -7954423 - L3 LINE CR1 -242 1335 1052 368 157 0 50 chr3 210083716 210083818 -7953340 + FLAM_A SINE Alu 2 133 0 2369 149 46 9 chr3 210083823 210084260 -7952898 + L1PA15 LINE L1 5706 6158 -7 299 333 164 22 chr3 210084524 210084968 -7952190 + L2 LINE L2 1815 2321 -993 29 0 0 0 chr3 210084968 210084997 -7952161 + AT_rich Low_complexity Low_complexity 1 29 0 571 150 42 8 chr3 210085001 210085121 -7952037 - L1MA8 LINE L1 -5 6286 6163 2299 142 0 3 chr3 210085121 210085487 -7951671 - L1PA15 LINE L1 -4 6161 5797 2959 119 16 61 chr3 210085489 210085928 -7951230 - L1MA6 LINE L1 -233 6067 5657 207 0 0 0 chr3 210085928 210085951 -7951207 + (CA)n Simple_repeat Simple_repeat 2 24 0 2959 119 16 61 chr3 210085951 210086072 -7951086 - L1MA6 LINE L1 -643 5657 5532 257 336 75 48 chr3 210086100 210086392 -7950766 + L2 LINE L2 2288 2587 -727 2201 42 0 15 chr3 210086688 210086953 -7950205 + AluY SINE Alu 36 296 -15 349 356 37 18 chr3 210087713 210087876 -7949282 - MIR SINE MIR -78 184 19 23 0 0 0 chr3 210088204 210088227 -7948931 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr3 210088431 210088453 -7948705 + (T)n Simple_repeat Simple_repeat 1 22 0 234 240 20 30 chr3 210088739 210088839 -7948319 + (TATTG)n Simple_repeat Simple_repeat 2 100 0 228 356 52 81 chr3 210089190 210089499 -7947659 + L2 LINE L2 2892 3191 -81 2255 129 28 6 chr3 210091033 210091389 -7945769 - THE1B LTR MaLR 0 364 1 21 57 0 0 chr3 210091390 210091425 -7945733 + AT_rich Low_complexity Low_complexity 1 35 0 680 204 138 12 chr3 210091558 210091725 -7945433 + MER5A DNA MER1_type 1 188 -1 22 35 0 0 chr3 210093199 210093228 -7943930 + AT_rich Low_complexity Low_complexity 1 29 0 1154 261 146 37 chr3 210093516 210094694 -7942464 - L1ME3A LINE L1 -9 6161 4836 226 127 52 46 chr3 210094712 210094885 -7942273 + (TATAA)n Simple_repeat Simple_repeat 1 174 0 600 265 66 33 chr3 210094930 210095580 -7941578 - L1ME3A LINE L1 -1386 4760 4052 1593 103 131 0 chr3 210095627 210095879 -7941279 + AluSx SINE Alu 1 285 -17 1462 196 10 27 chr3 210096409 210096705 -7940453 + AluJo SINE Alu 1 291 -21 21 0 0 0 chr3 210097369 210097390 -7939768 + AT_rich Low_complexity Low_complexity 1 21 0 1508 153 75 11 chr3 210097427 210097756 -7939402 + L1MB7 LINE L1 5222 5569 -615 694 211 39 0 chr3 210097757 210097913 -7939245 + L1MB7 LINE L1 5982 6143 -41 329 390 99 34 chr3 210099330 210099622 -7937536 + L2 LINE L2 2924 3234 -38 243 184 0 0 chr3 210100588 210100637 -7936521 + L1MA8 LINE L1 5745 5793 -507 400 104 31 21 chr3 210100641 210100737 -7936421 + (TA)n Simple_repeat Simple_repeat 2 98 0 1238 180 27 141 chr3 210100737 210101148 -7936010 + MLT1A1 LTR MaLR 2 365 0 1411 123 16 40 chr3 210101148 210101399 -7935759 + L1MA8 LINE L1 5786 6030 -261 508 198 57 9 chr3 210102709 210102815 -7934343 + MER5A DNA MER1_type 79 189 0 2009 130 7 0 chr3 210103500 210103812 -7933346 - AluSx SINE Alu 0 314 1 2025 100 20 23 chr3 210104004 210104303 -7932855 - AluSx SINE Alu -14 298 1 2210 118 3 0 chr3 210104303 210104607 -7932551 - AluSq SINE Alu -8 305 1 19331 168 23 17 chr3 210105362 210109927 -7927231 + L1MA3 LINE L1 330 4968 -2756 1801 140 4 14 chr3 210109927 210110205 -7926953 + AluSg SINE Alu 1 275 -35 19331 168 23 17 chr3 210110205 210112979 -7924179 + L1MA3 LINE L1 4968 7723 -1 1583 189 6 9 chr3 210112968 210113285 -7923873 + L1MB3 LINE L1 5478 5793 -390 * 195 42 0 0 chr3 210113351 210113375 -7923783 + (TA)n Simple_repeat Simple_repeat 1 24 0 888 161 27 0 chr3 210113375 210113524 -7923634 + L1MB3 LINE L1 5792 5944 -239 1022 221 130 31 chr3 210113524 210113877 -7923281 + MLT1C LTR MaLR 28 415 -52 243 0 0 0 chr3 210113894 210113921 -7923237 + (T)n Simple_repeat Simple_repeat 1 27 0 1272 160 4 4 chr3 210113946 210114177 -7922981 + L1MB3 LINE L1 5953 6183 0 438 190 33 98 chr3 210114514 210114698 -7922460 + L1 LINE L1 5179 5350 -796 188 67 33 0 chr3 210114735 210114765 -7922393 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 2497 51 3 10 chr3 210116006 210116319 -7920839 + AluY SINE Alu 1 311 0 394 321 83 36 chr3 210117043 210117345 -7919813 + LTR16C LTR ERVL 167 482 -9 204 315 72 27 chr3 210117350 210117461 -7919697 + L2 LINE L2 2687 2802 -512 194 303 187 7 chr3 210117728 210117883 -7919275 + L2 LINE L2 3129 3311 -2 16177 179 25 43 chr3 210118908 210122937 -7914221 + L1P4 LINE L1 1706 5638 -523 1149 116 6 0 chr3 210123007 210123179 -7913979 + L1PA13 LINE L1 5990 6162 -1 3495 272 36 12 chr3 210123185 210124566 -7912592 + L1M4 LINE L1 2205 3618 -2528 401 326 64 9 chr3 210124577 210124795 -7912363 + L1ME LINE L1 737 966 -5104 388 435 35 6 chr3 210124848 210125161 -7911997 + L1ME LINE L1 289 610 -5953 432 248 74 60 chr3 210125547 210125866 -7911292 + L1ME LINE L1 1201 1421 -4859 707 167 83 0 chr3 210125866 210125998 -7911160 + L1PA16 LINE L1 6008 6150 -16 291 283 20 20 chr3 210126092 210126244 -7910914 + L1ME LINE L1 1729 1880 -4683 4581 142 5 5 chr3 210126246 210127211 -7909947 + L1MA3 LINE L1 5007 5972 -333 350 288 3 37 chr3 210127327 210127512 -7909646 + G-rich Low_complexity Low_complexity 1 204 -116 227 30 0 30 chr3 210127512 210127545 -7909613 + (CGGGGG)n Simple_repeat Simple_repeat 3 34 0 350 288 3 37 chr3 210127545 210127659 -7909499 + G-rich Low_complexity Low_complexity 204 320 0 42 0 0 0 chr3 210127751 210127793 -7909365 + GC_rich Low_complexity Low_complexity 1 42 0 4391 126 1 6 chr3 210127888 210128589 -7908569 + L1MA3 LINE L1 5608 6305 0 21 0 0 0 chr3 210128675 210128696 -7908462 + AT_rich Low_complexity Low_complexity 1 21 0 2169 88 0 20 chr3 210128706 210129045 -7908113 + AluY SINE Alu 1 333 0 1389 31 0 0 chr3 210129262 210129423 -7907735 + AluY SINE Alu 150 310 -1 2245 96 10 0 chr3 210129450 210129742 -7907416 + AluSp SINE Alu 7 301 -12 696 274 96 56 chr3 210129989 210130798 -7906360 + L1ME LINE L1 2165 2978 -3404 2148 111 0 3 chr3 210130819 210131116 -7906042 + AluSc SINE Alu 1 296 -13 238 267 14 55 chr3 210131215 210131361 -7905797 + L1ME LINE L1 5427 5566 -816 462 260 133 70 chr3 210131387 210131759 -7905399 + L1ME LINE L1 5555 5964 -442 31599 102 10 60 chr3 210132391 210138875 -7898283 + L1PA7 LINE L1 12 6165 0 338 324 125 26 chr3 210139144 210139416 -7897742 - MER102b DNA MER1_type -29 312 14 1962 90 90 0 chr3 210139761 210140040 -7897118 - AluSg SINE Alu -6 304 1 13209 150 33 8 chr3 210140193 210140338 -7896820 - Tigger1 DNA MER2_type 0 2418 2278 2325 83 0 13 chr3 210140338 210140639 -7896519 + AluY SINE Alu 14 310 -1 13209 150 33 8 chr3 210140639 210142853 -7894305 - Tigger1 DNA MER2_type -140 2278 1 395 237 149 18 chr3 210143777 210143891 -7893267 - MER45A DNA AcHobo -49 129 1 1623 183 0 14 chr3 210143930 210144214 -7892944 - AluJo SINE Alu -30 282 3 180 0 0 0 chr3 210144564 210144584 -7892574 + (TG)n Simple_repeat Simple_repeat 2 21 0 747 304 118 53 chr3 210145863 210146330 -7890828 - L2 LINE L2 -261 3052 2568 1556 344 128 21 chr3 210146330 210147404 -7889754 - L2 LINE L2 -1747 1567 380 23 0 0 0 chr3 210148255 210148278 -7888880 + AT_rich Low_complexity Low_complexity 1 23 0 26 50 0 0 chr3 210148369 210148409 -7888749 + AT_rich Low_complexity Low_complexity 1 40 0 27 0 0 0 chr3 210148599 210148626 -7888532 + AT_rich Low_complexity Low_complexity 1 27 0 34 79 0 0 chr3 210148660 210148736 -7888422 + AT_rich Low_complexity Low_complexity 1 76 0 370 287 57 0 chr3 210149809 210149931 -7887227 - MIR3 SINE MIR -38 170 42 2029 126 0 25 chr3 210149990 210150365 -7886793 + AluSx SINE Alu 1 367 0 294 50 0 0 chr3 210150559 210150599 -7886559 + (TA)n Simple_repeat Simple_repeat 1 40 0 1216 283 119 26 chr3 210150757 210151384 -7885774 - L1M2b LINE L1 -5767 1442 740 21 0 0 0 chr3 210202713 210202734 -7834424 + AT_rich Low_complexity Low_complexity 1 21 0 321 273 67 20 chr3 210203258 210203408 -7833750 - L1MC4 LINE L1 -710 7332 7176 411 277 59 0 chr3 210203917 210204018 -7833140 + MER81 DNA DNA 8 114 0 637 198 55 22 chr3 210205170 210205352 -7831806 + MER96B DNA MER1_type? 46 233 -184 547 338 92 6 chr3 210205388 210205716 -7831442 + LTR16A LTR ERVL 94 449 -1 200 214 24 0 chr3 210206499 210206541 -7830617 + CT-rich Low_complexity Low_complexity 2 44 0 197 366 22 60 chr3 210207015 210207149 -7830009 + MIR SINE MIR 28 156 -106 287 228 56 2 chr3 210207830 210207915 -7829243 - MIR SINE MIR -26 182 84 497 198 0 21 chr3 210208902 210208998 -7828160 - FRAM SINE Alu -13 163 70 677 236 18 18 chr3 210209047 210209212 -7827946 - MER20 DNA MER1_type -38 181 17 23 33 0 0 chr3 210209536 210209566 -7827592 + AT_rich Low_complexity Low_complexity 1 30 0 307 330 26 17 chr3 210209812 210209927 -7827231 + MIR3 SINE MIR 9 124 -84 680 258 6 0 chr3 210210104 210210271 -7826887 + FAM SINE Alu 1 168 -7 337 278 118 49 chr3 210210923 210211023 -7826135 - L1ME LINE L1 -306 5815 5723 2152 102 0 0 chr3 210211023 210211352 -7825806 + AluY SINE Alu 1 329 0 337 278 118 49 chr3 210211352 210211495 -7825663 - L1ME LINE L1 -398 5723 5554 468 296 63 32 chr3 210211502 210211691 -7825467 + MIR SINE MIR 2 196 -66 350 339 37 32 chr3 210212386 210212604 -7824554 - L1ME LINE L1 -2060 4086 3868 1123 146 5 0 chr3 210212685 210212884 -7824274 - L1MA4 LINE L1 -18 6282 6083 21 36 0 0 chr3 210213123 210213151 -7824007 + AT_rich Low_complexity Low_complexity 1 28 0 2180 115 3 0 chr3 210213317 210213613 -7823545 + AluSq SINE Alu 1 297 -16 1934 273 54 35 chr3 210214591 210214658 -7822500 + L1ME1 LINE L1 63 127 -6269 2082 134 3 0 chr3 210214658 210214956 -7822202 - AluSq SINE Alu -14 299 1 1934 273 54 35 chr3 210214956 210215737 -7821421 + L1ME1 LINE L1 127 927 -5469 1486 226 7 3 chr3 210215731 210216040 -7821118 + L1ME1 LINE L1 5396 5705 -530 * 339 243 33 3 chr3 210216035 210216146 -7821012 - L1ME LINE L1 -403 5761 5642 * 295 350 48 0 chr3 210216152 210216255 -7820903 + L2 LINE L2 3201 3308 -5 1163 236 26 65 chr3 210216285 210216713 -7820445 + L1ME1 LINE L1 5818 6228 -7 681 317 130 8 chr3 210217073 210217474 -7819684 - L1MCb LINE L1 -5595 450 1 2266 196 46 26 chr3 210217496 210218043 -7819115 + L1MC2 LINE L1 5779 6336 -8 383 293 85 41 chr3 210218096 210218366 -7818792 + L1ME3A LINE L1 4313 4594 -1552 1950 148 102 22 chr3 210218416 210218816 -7818342 - MSTB1 LTR MaLR 0 432 1 638 296 95 58 chr3 210218826 210219275 -7817883 + L1ME3A LINE L1 4719 5193 -953 1600 190 6 19 chr3 210219275 210219591 -7817567 + AluJb SINE Alu 1 312 0 638 296 95 58 chr3 210219591 210219678 -7817480 + L1ME3A LINE L1 5193 5275 -871 570 307 68 46 chr3 210219695 210220347 -7816811 + L1ME3A LINE L1 5289 5954 -216 277 164 41 41 chr3 210220806 210220879 -7816279 + L2 LINE L2 2184 2256 -1058 251 345 18 0 chr3 210221901 210222014 -7815144 + L1MC4a LINE L1 7279 7393 -415 607 93 0 0 chr3 210222238 210222324 -7814834 + Alu SINE Alu 222 307 -3 454 261 130 42 chr3 210222324 210222585 -7814573 + L1MC5 LINE L1 7624 7907 -54 420 300 220 5 chr3 210223358 210223558 -7813600 + MIR SINE MIR 7 249 -13 265 295 0 0 chr3 210223710 210223789 -7813369 - L1ME LINE L1 -547 5574 5496 331 336 25 0 chr3 210223905 210224024 -7813134 - MIR3 SINE MIR -51 157 36 589 290 112 22 chr3 210224575 210224851 -7812307 - L2 LINE L2 -1 3312 3012 204 360 75 36 chr3 210224879 210225187 -7811971 - L2 LINE L2 -359 2955 2636 180 184 0 26 chr3 210225579 210225617 -7811541 - MIR SINE MIR -57 151 115 243 323 114 9 chr3 210226156 210226376 -7810782 - L2 LINE L2 -1267 2047 1805 26 0 0 0 chr3 210226491 210226517 -7810641 + AT_rich Low_complexity Low_complexity 1 26 0 327 333 35 11 chr3 210226532 210226706 -7810452 + MIR SINE MIR 85 262 0 30 0 0 0 chr3 210227221 210227251 -7809907 + AT_rich Low_complexity Low_complexity 1 30 0 1852 219 60 18 chr3 210227629 210228080 -7809078 + MER89 LTR ERV1 1 470 -89 450 0 0 0 chr3 210228479 210228529 -7808629 + (CA)n Simple_repeat Simple_repeat 1 50 0 21 0 0 0 chr3 210228565 210228586 -7808572 + AT_rich Low_complexity Low_complexity 1 21 0 2028 113 24 0 chr3 210229357 210229649 -7807509 - AluSp SINE Alu -14 299 1 268 320 127 20 chr3 210229993 210230143 -7807015 - MIR SINE MIR -15 247 82 1817 126 15 0 chr3 210230249 210230520 -7806638 + MER49 LTR ERV1 9 283 -640 1486 254 11 11 chr3 210230577 210230932 -7806226 + MER4D LTR ERV1 549 903 0 485 294 130 0 chr3 210231184 210231361 -7805797 + MIR SINE MIR 58 257 -5 792 264 73 119 chr3 210231604 210232244 -7804914 - MER21B LTR ERV1 -155 708 98 319 303 101 0 chr3 210232213 210232322 -7804836 - MER77 LTR ERV1 -404 201 82 * 2032 91 7 47 chr3 210232706 210233026 -7804132 - AluSx SINE Alu 0 308 1 880 227 97 29 chr3 210233609 210233709 -7803449 + L2 LINE L2 2410 2502 -812 2231 105 0 19 chr3 210233709 210234022 -7803136 - AluSx SINE Alu -5 307 1 880 227 97 29 chr3 210234022 210234199 -7802959 + L2 LINE L2 2502 2706 -608 618 192 40 0 chr3 210234199 210234324 -7802834 - MER4D LTR ERV1 0 903 774 491 199 55 55 chr3 210234330 210234476 -7802682 - AluJb SINE Alu -59 253 108 751 271 78 71 chr3 210235025 210235320 -7801838 - L2 LINE L2 -8 3305 3009 21 0 0 0 chr3 210235795 210235816 -7801342 + AT_rich Low_complexity Low_complexity 1 21 0 1317 184 25 53 chr3 210235890 210236211 -7800947 + L1MA9 LINE L1 5994 6305 -7 2485 59 0 0 chr3 210236726 210237031 -7800127 + AluY SINE Alu 1 305 -6 807 286 32 38 chr3 210237843 210238214 -7798944 + L1MEc LINE L1 35 403 -5993 555 231 74 44 chr3 210238212 210238415 -7798743 + L1MEc LINE L1 247 455 -5941 * 1209 250 26 37 chr3 210238417 210238845 -7798313 + L1ME1 LINE L1 5739 6161 -5 273 322 0 11 chr3 210239392 210239482 -7797676 + L2 LINE L2 3225 3313 0 25 31 0 0 chr3 210240506 210240538 -7796620 + AT_rich Low_complexity Low_complexity 1 32 0 284 313 56 31 chr3 210240617 210240777 -7796381 - MIR SINE MIR -50 212 49 571 287 172 12 chr3 210240969 210241370 -7795788 + LTR50 LTR ERVL 2 466 -329 488 218 192 16 chr3 210241364 210241557 -7795601 + LTR50 LTR ERVL 569 795 0 * 805 87 47 17 chr3 210241816 210241988 -7795170 + CT-rich Low_complexity Low_complexity 4 180 0 24 32 0 0 chr3 210242098 210242129 -7795029 + AT_rich Low_complexity Low_complexity 1 31 0 358 288 82 13 chr3 210242211 210242444 -7794714 + L1ME4a LINE L1 5698 5946 -175 359 325 88 6 chr3 210242749 210242909 -7794249 + MIR SINE MIR 20 192 -70 1161 187 3 132 chr3 210242998 210243324 -7793834 - AluJb SINE Alu -18 284 1 237 98 0 0 chr3 210243493 210243534 -7793624 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 314 326 70 60 chr3 210244098 210244313 -7792845 - L3 LINE CR1 0 1577 1361 353 399 58 16 chr3 210244605 210244863 -7792295 - L3 LINE CR1 -202 1375 1107 815 227 95 41 chr3 210245287 210245651 -7791507 - MSTC LTR MaLR 0 428 1 242 159 23 0 chr3 210245999 210246043 -7791115 - MSTD LTR MaLR -351 45 1 26 0 0 0 chr3 210246632 210246658 -7790500 + AT_rich Low_complexity Low_complexity 1 26 0 29 70 0 0 chr3 210247133 210247190 -7789968 + AT_rich Low_complexity Low_complexity 1 57 0 3432 283 62 35 chr3 210247926 210248599 -7788559 - L1 LINE L1 -1202 4944 4226 234 62 0 0 chr3 210248599 210248631 -7788527 + (TTG)n Simple_repeat Simple_repeat 2 33 0 3432 283 62 35 chr3 210248631 210249114 -7788044 - L1 LINE L1 -1920 4226 3757 1886 156 24 70 chr3 210249123 210249821 -7787337 + L1MA9 LINE L1 4951 5616 -696 874 196 0 13 chr3 210249824 210249977 -7787181 + FRAM SINE Alu 5 155 -21 2906 170 78 51 chr3 210249981 210250665 -7786493 + L1MA9 LINE L1 5609 6310 -2 198 228 316 0 chr3 210250706 210250785 -7786373 + L2 LINE L2 3168 3271 -1 339 238 24 24 chr3 210250865 210250949 -7786209 + MLT1K LTR MaLR 2 85 -503 219 69 0 0 chr3 210251066 210251095 -7786063 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 266 311 78 64 chr3 210254018 210254237 -7782921 - L3b LINE CR1 -3 1580 1359 21 0 0 0 chr3 210254244 210254265 -7782893 + AT_rich Low_complexity Low_complexity 1 21 0 300 27 0 0 chr3 210254679 210254716 -7782442 + (GA)n Simple_repeat Simple_repeat 2 38 0 22 35 0 0 chr3 210255526 210255555 -7781603 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr3 210255581 210255611 -7781547 + AT_rich Low_complexity Low_complexity 1 30 0 246 353 29 29 chr3 210255703 210255805 -7781353 - MIR SINE MIR -68 140 39 4938 212 105 111 chr3 210255901 210258582 -7778576 + L1MCa LINE L1 20 2732 -3875 1460 242 19 7 chr3 210258847 210259272 -7777886 + L1M4 LINE L1 2224 2653 -3493 201 147 0 0 chr3 210259368 210259402 -7777756 + (TG)n Simple_repeat Simple_repeat 2 35 0 2463 63 0 0 chr3 210259515 210259814 -7777344 + AluY SINE Alu 1 299 -12 28 71 0 0 chr3 210260067 210260123 -7777035 + AT_rich Low_complexity Low_complexity 1 56 0 220 162 0 0 chr3 210260646 210260683 -7776475 + L2 LINE L2 3261 3297 -16 816 345 37 23 chr3 210261748 210261946 -7775212 - HERV16 LTR ERVL -1901 3095 2888 883 226 41 27 chr3 210261946 210262167 -7774991 + MER58A DNA MER1_type 1 224 0 816 345 37 23 chr3 210262167 210262316 -7774842 - HERV16 LTR ERVL -2108 2888 2743 732 323 94 17 chr3 210262678 210263028 -7774130 - LTR16A LTR ERVL -7 443 67 2724 166 59 96 chr3 210263234 210263961 -7773197 + L1MD1 LINE L1 5534 6233 -9 370 299 38 25 chr3 210264538 210264695 -7772463 + L3 LINE CR1 1316 1474 -103 23 54 0 0 chr3 210264757 210264794 -7772364 + AT_rich Low_complexity Low_complexity 1 37 0 43 20 0 0 chr3 210265008 210265058 -7772100 + AT_rich Low_complexity Low_complexity 1 50 0 183 100 0 0 chr3 210265369 210265399 -7771759 + (TTTTA)n Simple_repeat Simple_repeat 3 32 0 735 167 16 0 chr3 210265401 210265527 -7771631 - FLAM_C SINE Alu -13 130 3 449 55 0 0 chr3 210265777 210265832 -7771326 - L1PA5 LINE L1 -262 5892 5838 965 40 0 16 chr3 210265832 210265954 -7771204 + L1PA4 LINE L1 6029 6152 -3 272 304 176 8 chr3 210266209 210266334 -7770824 + MIR3 SINE MIR 13 158 -50 219 69 0 0 chr3 210266601 210266630 -7770528 + (TC)n Simple_repeat Simple_repeat 2 30 0 224 284 42 32 chr3 210267006 210267101 -7770057 + MER5A DNA MER1_type 7 102 -87 22 88 0 0 chr3 210268026 210268083 -7769075 + AT_rich Low_complexity Low_complexity 1 57 0 505 198 20 0 chr3 210268250 210268351 -7768807 + MER5A DNA MER1_type 10 112 -77 575 304 18 24 chr3 210268522 210268690 -7768468 - MIR3 SINE MIR -12 196 30 29 28 0 0 chr3 210269386 210269422 -7767736 + AT_rich Low_complexity Low_complexity 1 36 0 200 200 0 0 chr3 210269649 210269684 -7767474 + GA-rich Low_complexity Low_complexity 1 35 0 286 191 45 90 chr3 210270573 210270662 -7766496 + L1MEd LINE L1 57 141 -5978 2148 112 3 6 chr3 210270685 210270999 -7766159 + AluSq SINE Alu 1 313 0 616 118 9 9 chr3 210271001 210271111 -7766047 + (GGAA)n Simple_repeat Simple_repeat 4 113 0 299 397 0 7 chr3 210271214 210271355 -7765803 + L1MEd LINE L1 243 382 -5737 1753 246 105 8 chr3 210272021 210272472 -7764686 + MLT1D LTR MaLR 1 416 -12 2117 111 3 22 chr3 210272547 210272863 -7764295 - AluSg SINE Alu 0 310 1 1346 192 21 0 chr3 210272971 210273258 -7763900 + MER33 DNA MER1_type 2 294 -30 624 170 45 0 chr3 210273258 210273370 -7763788 + L1MA3 LINE L1 17 133 -7432 * 9471 187 21 9 chr3 210273367 210276365 -7760793 + L1MA3 LINE L1 1099 4341 -3224 1385 151 59 0 chr3 210276365 210276584 -7760574 + AluJb SINE Alu 1 232 -80 9560 171 17 13 chr3 210276589 210279365 -7757793 + L1MA3 LINE L1 4910 7693 -31 4979 129 40 2 chr3 210279481 210280335 -7756823 + L1MA3 LINE L1 5418 6303 -2 191 265 17 86 chr3 210282026 210282143 -7755015 - L2 LINE L2 -1360 1954 1846 694 271 113 30 chr3 210282563 210282903 -7754255 + L1MC4 LINE L1 6558 6827 -981 2211 125 0 0 chr3 210282903 210283207 -7753951 + AluSx SINE Alu 1 304 -8 694 271 113 30 chr3 210283207 210283269 -7753889 + L1MC4 LINE L1 6827 6882 -926 302 210 80 65 chr3 210283409 210283447 -7753711 + L1MC4 LINE L1 7098 7134 -908 2638 111 25 32 chr3 210283447 210283492 -7753666 - MSTA LTR MaLR 0 428 384 2108 86 0 14 chr3 210283492 210283772 -7753386 + AluY SINE Alu 35 310 -1 2638 111 25 32 chr3 210283772 210284157 -7753001 - MSTA LTR MaLR -44 384 1 302 210 80 65 chr3 210284157 210284256 -7752902 + L1MC4 LINE L1 7134 7237 -805 213 94 0 0 chr3 210284349 210284381 -7752777 + (TG)n Simple_repeat Simple_repeat 2 33 0 334 341 71 20 chr3 210284442 210284738 -7752420 + L1MC5 LINE L1 7283 7593 -368 1144 306 85 13 chr3 210285012 210285472 -7751686 + L2 LINE L2 2205 2697 -617 308 310 49 35 chr3 210285631 210285773 -7751385 - MLT1J LTR MaLR -333 178 35 22 35 0 0 chr3 210286632 210286661 -7750497 + AT_rich Low_complexity Low_complexity 1 29 0 404 338 66 46 chr3 210287479 210287923 -7749235 + LTR16A LTR ERVL 1 450 0 190 359 30 60 chr3 210288566 210288733 -7748425 + L2 LINE L2 2551 2712 -602 3236 204 27 3 chr3 210289480 210290116 -7747042 + MER82 DNA MER2_type 2 652 -1 24 0 0 0 chr3 210290535 210290559 -7746599 + AT_rich Low_complexity Low_complexity 1 24 0 198 191 0 0 chr3 210291186 210291228 -7745930 + GA-rich Low_complexity Low_complexity 1 42 0 480 293 48 16 chr3 210291470 210291658 -7745500 + HAL1 LINE L1 54 247 -2260 414 0 0 0 chr3 210291713 210291759 -7745399 + (TG)n Simple_repeat Simple_repeat 2 47 0 1245 302 16 23 chr3 210291905 210292443 -7744715 - MLT2E LTR ERVL -3 625 15 1568 293 52 27 chr3 210292443 210293118 -7744040 + HAL1 LINE L1 475 1166 -1341 344 207 104 37 chr3 210293159 210293323 -7743835 + HAL1 LINE L1 2147 2321 -186 393 176 0 0 chr3 210293324 210293398 -7743760 + (CA)n Simple_repeat Simple_repeat 2 75 0 306 219 0 0 chr3 210293398 210293462 -7743696 - L1MC4 LINE L1 -1339 6703 6640 2075 110 7 3 chr3 210293484 210293783 -7743375 + AluSq SINE Alu 1 300 -13 295 293 100 20 chr3 210293788 210293938 -7743220 + HAL1 LINE L1 2324 2485 -22 1720 178 18 9 chr3 210294039 210294377 -7742781 + MER61A LTR ERV1 1 341 -2 423 0 0 0 chr3 210296065 210296112 -7741046 + (CA)n Simple_repeat Simple_repeat 2 48 0 1378 276 68 57 chr3 210296135 210296759 -7740399 + L1ME1 LINE L1 1431 2034 -4181 2432 83 0 0 chr3 210296759 210297059 -7740099 + AluSg SINE Alu 1 300 -10 1378 276 68 57 chr3 210297059 210297615 -7739543 + L1ME1 LINE L1 2034 2582 -3633 * 2079 248 90 23 chr3 210297587 210298653 -7738505 + L1ME1 LINE L1 4975 6054 -181 1312 159 0 17 chr3 210298769 210299002 -7738156 + AluSx SINE Alu 47 275 -37 275 70 0 23 chr3 210299005 210299048 -7738110 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 608 168 35 9 chr3 210299807 210299920 -7737238 - MLT1C LTR MaLR -2 465 350 1968 82 7 4 chr3 210300104 210300374 -7736784 - AluY SINE Alu -2 309 39 529 256 70 1 chr3 210301558 210301690 -7735468 - MIR SINE MIR -36 172 33 2118 83 11 4 chr3 210301758 210302060 -7735098 - AluY SINE Alu 0 304 1 546 234 42 48 chr3 210303012 210303179 -7733979 - MIR SINE MIR -13 249 84 201 241 51 25 chr3 210303176 210303255 -7733903 - L2 LINE L2 -84 3229 3149 * 233 271 24 47 chr3 210303623 210303708 -7733450 - L2 LINE L2 -3135 179 97 239 91 0 0 chr3 210303734 210303767 -7733391 + L2 LINE L2 3190 3222 -91 191 86 0 29 chr3 210303836 210303871 -7733287 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 699 156 37 15 chr3 210304681 210304816 -7732342 - MLT1A1 LTR MaLR 0 365 228 2007 53 57 11 chr3 210304918 210305182 -7731976 + AluY SINE Alu 28 303 -8 451 229 37 18 chr3 210305182 210305291 -7731867 + MIR SINE MIR 150 260 -2 296 334 108 71 chr3 210305310 210305831 -7731327 + L2 LINE L2 2720 3254 -18 2256 80 0 3 chr3 210307651 210307938 -7729220 + AluY SINE Alu 5 290 -21 2202 83 28 0 chr3 210307974 210308264 -7728894 + AluSg SINE Alu 1 298 -12 475 287 205 8 chr3 210308985 210309253 -7727905 + L2 LINE L2 1629 1949 -1365 1214 143 40 13 chr3 210309255 210309479 -7727679 - L1MB2 LINE L1 -7 6164 5935 1043 130 0 0 chr3 210309480 210309626 -7727532 - AluSg/x SINE Alu -19 293 148 22 0 0 0 chr3 210310318 210310340 -7726818 + AT_rich Low_complexity Low_complexity 1 22 0 21 82 0 0 chr3 210310689 210310738 -7726420 + AT_rich Low_complexity Low_complexity 1 49 0 26 0 0 0 chr3 210312223 210312249 -7724909 + AT_rich Low_complexity Low_complexity 1 26 0 1443 187 4 29 chr3 210313177 210313455 -7723703 + AluJo SINE Alu 5 275 -37 192 40 0 0 chr3 210313471 210313496 -7723662 + (GA)n Simple_repeat Simple_repeat 2 26 0 863 69 121 0 chr3 210315353 210315469 -7721689 - AluSg/x SINE Alu -18 292 163 355 256 3 0 chr3 210315773 210315881 -7721277 - L1MB2 LINE L1 -440 5681 5604 250 229 96 24 chr3 210316719 210316802 -7720356 + L2 LINE L2 3208 3296 -17 763 136 0 43 chr3 210318074 210318214 -7718944 - FLAM_C SINE Alu -4 139 6 1591 99 0 0 chr3 210318327 210318529 -7718629 - AluSc SINE Alu -107 202 1 1072 222 64 92 chr3 210318703 210319171 -7717987 - LTR16A1 LTR ERVL 0 457 3 502 131 37 0 chr3 210319806 210319896 -7717262 - MER51A LTR ERV1 -81 553 441 1028 136 0 0 chr3 210320090 210320230 -7716928 - AluSg/x SINE Alu -40 270 131 194 271 157 0 chr3 210320422 210320492 -7716666 + MIR SINE MIR 52 132 -130 400 353 153 0 chr3 210322559 210322729 -7714429 - MIR SINE MIR -44 218 23 568 118 0 0 chr3 210323159 210323244 -7713914 + AluS SINE Alu 1 85 -227 820 215 6 12 chr3 210323247 210323410 -7713748 + MER68 LTR ERV1 400 561 -1 347 329 36 14 chr3 210323747 210323887 -7713271 + MIR SINE MIR 93 235 -27 401 286 120 45 chr3 210324280 210324546 -7712612 + L3 LINE CR1 1186 1471 -106 304 302 164 8 chr3 210326025 210326198 -7710960 + MIR SINE MIR 14 213 -49 21 0 0 0 chr3 210326382 210326403 -7710755 + AT_rich Low_complexity Low_complexity 1 21 0 182 274 143 12 chr3 210327720 210327804 -7709354 + L2 LINE L2 3219 3313 0 298 125 0 0 chr3 210328637 210328685 -7708473 - MER2 DNA MER2_type -139 206 159 333 0 0 0 chr3 210328801 210328838 -7708320 + (TA)n Simple_repeat Simple_repeat 2 38 0 272 304 87 0 chr3 210329150 210329242 -7707916 - MIR3 SINE MIR -31 177 78 23 33 0 0 chr3 210329505 210329535 -7707623 + AT_rich Low_complexity Low_complexity 1 30 0 301 251 25 83 chr3 210330262 210330437 -7706721 + L2 LINE L2 2788 2953 -319 726 270 0 56 chr3 210330539 210330754 -7706404 + L2 LINE L2 3111 3313 0 1438 169 43 110 chr3 210331598 210332017 -7705141 + MLT1B LTR MaLR 1 396 0 1675 146 60 0 chr3 210332423 210332716 -7704442 + AluJb SINE Alu 1 309 0 324 275 0 0 chr3 210332762 210332842 -7704316 - MER20 DNA MER1_type -19 200 121 2336 67 3 0 chr3 210334101 210334426 -7702732 + AluSp SINE Alu 1 326 0 276 57 19 38 chr3 210335526 210335579 -7701579 + (TTTTC)n Simple_repeat Simple_repeat 3 54 0 1709 134 17 30 chr3 210335581 210335880 -7701278 - AluSg SINE Alu -2 308 14 21 89 0 0 chr3 210336689 210336745 -7700413 + AT_rich Low_complexity Low_complexity 1 56 0 330 274 92 39 chr3 210337043 210337196 -7699962 - MIR SINE MIR 0 262 102 1865 118 0 12 chr3 210337200 210337455 -7699703 + AluSx SINE Alu 4 255 -57 269 50 0 25 chr3 210337467 210337507 -7699651 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2087 240 83 45 chr3 210338349 210339521 -7697637 + L1MD3 LINE L1 5389 6516 -1479 2420 147 5 3 chr3 210339521 210339895 -7697263 + THE1C LTR MaLR 1 375 0 2087 240 83 45 chr3 210339895 210341150 -7696008 + L1MD3 LINE L1 6516 7982 -13 202 226 81 16 chr3 210341196 210341258 -7695900 - MER5B DNA MER1_type -112 66 1 214 300 0 0 chr3 210341609 210341659 -7695499 + MER5A DNA MER1_type 140 189 0 2517 85 99 14 chr3 210341746 210342159 -7694999 - LTR7 LTR ERV1 -2 448 1 2349 103 50 13 chr3 210342159 210342537 -7694621 - HERVH LTR ERV1 0 7713 7322 1375 129 18 5 chr3 210342535 210342752 -7694406 - HERVH LTR ERV1 -1894 5819 5600 * 4295 141 1 3 chr3 210342756 210343416 -7693742 - HERVH LTR ERV1 -2567 5146 4488 3513 81 8 4 chr3 210343418 210343910 -7693248 - HERVH LTR ERV1 -3720 3993 3500 * 19951 100 61 23 chr3 210343909 210347079 -7690079 - HERVH LTR ERV1 -4423 3290 1 2773 68 94 12 chr3 210347081 210347495 -7689663 - LTR7 LTR ERV1 -2 448 1 342 310 49 7 chr3 210348323 210348465 -7688693 - MIR SINE MIR -6 256 109 190 241 13 114 chr3 210348743 210348822 -7688336 - MIR3 SINE MIR -9 199 129 185 224 61 0 chr3 210351300 210351349 -7685809 - MIR SINE MIR -99 163 112 11290 108 7 1 chr3 210352376 210353946 -7683212 - Charlie3 DNA MER1_type -4 2706 1128 1493 149 50 25 chr3 210353940 210354221 -7682937 - Charlie3 DNA MER1_type -2421 289 2 * 6902 204 69 54 chr3 210354424 210355030 -7682128 - L1MC3 LINE L1 0 7785 7190 253 247 0 26 chr3 210355030 210355107 -7682051 - MLT1F1 LTR MaLR -442 125 51 6902 204 69 54 chr3 210355107 210355866 -7681292 - L1MC3 LINE L1 -595 7190 6304 2580 53 0 0 chr3 210355866 210356167 -7680991 + AluY SINE Alu 1 301 -10 6902 204 69 54 chr3 210356167 210356665 -7680493 - L1MC3 LINE L1 -1481 6304 5815 2544 276 74 24 chr3 210356671 210356985 -7680173 - L1MCb LINE L1 -4851 1194 897 273 57 0 0 chr3 210356985 210357020 -7680138 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2544 276 74 24 chr3 210357020 210358298 -7678860 - L1MCb LINE L1 -5148 897 1 249 282 153 12 chr3 210359247 210359332 -7677826 + MIR SINE MIR 49 145 -63 279 291 73 0 chr3 210359431 210359541 -7677617 - MIR SINE MIR -73 189 72 278 278 63 40 chr3 210359878 210360004 -7677154 + L1ME1 LINE L1 107 235 -6161 1217 301 54 22 chr3 210360230 210361232 -7675926 + L1ME1 LINE L1 484 1517 -4879 5158 216 19 12 chr3 210361256 210362050 -7675108 + L1PA13 LINE L1 1187 2003 -4794 3978 38 23 2 chr3 210362050 210362530 -7674628 - LTR2B LTR ERV1 0 490 1 5158 216 19 12 chr3 210362530 210362898 -7674260 + L1PA13 LINE L1 2003 2367 -4430 12447 199 65 23 chr3 210362904 210363760 -7673398 + L1PA15 LINE L1 1276 2095 -5489 781 157 0 183 chr3 210363760 210363995 -7673163 + 7SK RNA RNA 2 193 0 12447 199 65 23 chr3 210363995 210369180 -7667978 + L1PA15 LINE L1 2095 7584 0 518 254 35 23 chr3 210369209 210369382 -7667776 + L1ME1 LINE L1 1535 1709 -4687 270 205 0 27 chr3 210369383 210369495 -7667663 + (TA)n Simple_repeat Simple_repeat 2 110 0 1585 210 0 3 chr3 210369502 210369792 -7667366 - AluJo SINE Alu -23 289 1 450 267 40 7 chr3 210369792 210369942 -7667216 + L1ME1 LINE L1 1700 1854 -4542 635 272 94 39 chr3 210369949 210370280 -7666878 + L1ME1 LINE L1 2209 2569 -3646 1406 233 14 3 chr3 210370280 210370567 -7666591 + AluJo SINE Alu 1 290 -22 635 272 94 39 chr3 210370567 210370650 -7666508 + L1ME1 LINE L1 2569 2646 -3569 1628 231 64 114 chr3 210370696 210371662 -7665496 + L1ME1 LINE L1 3970 4887 -1328 2647 246 85 3 chr3 210371684 210372443 -7664715 + L1ME1 LINE L1 5419 6400 -3 22 0 0 0 chr3 210372622 210372644 -7664514 + AT_rich Low_complexity Low_complexity 1 22 0 265 393 27 7 chr3 210372794 210372944 -7664214 + MIR SINE MIR 60 212 -50 1937 184 101 43 chr3 210373758 210373959 -7663199 + MER67D LTR ERV1 1 189 -325 1980 133 7 0 chr3 210373959 210374259 -7662899 + AluSx SINE Alu 1 302 -10 1937 184 101 43 chr3 210374259 210374542 -7662616 + MER67D LTR ERV1 189 513 -1 241 289 58 58 chr3 210376218 210376322 -7660836 + L2 LINE L2 3153 3256 -16 21 0 0 0 chr3 210377166 210377187 -7659971 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr3 210377988 210378012 -7659146 + (CA)n Simple_repeat Simple_repeat 2 25 0 505 299 164 0 chr3 210378389 210378603 -7658555 + MIR SINE MIR 8 256 -6 1713 218 51 13 chr3 210379385 210379834 -7657324 - MLT1C LTR MaLR -1 466 1 241 325 0 13 chr3 210380283 210380360 -7656798 + MIR SINE MIR 33 108 -100 25 0 0 0 chr3 210380561 210380586 -7656572 + AT_rich Low_complexity Low_complexity 1 25 0 848 146 8 0 chr3 210382038 210382168 -7654990 + AluJb SINE Alu 156 286 -26 377 256 36 97 chr3 210382631 210382826 -7654332 - L2 LINE L2 -13 3300 3118 218 0 70 23 chr3 210382915 210382958 -7654200 + (TA)n Simple_repeat Simple_repeat 1 45 0 270 0 0 0 chr3 210382995 210383025 -7654133 + (TA)n Simple_repeat Simple_repeat 1 30 0 4338 189 29 19 chr3 210383140 210383989 -7653169 + MER21B LTR ERV1 2 859 -4 1696 177 30 7 chr3 210383992 210384297 -7652861 - AluSx SINE Alu 0 312 1 11481 143 27 4 chr3 210384406 210386278 -7650880 - Tigger1 DNA MER2_type -45 2373 459 732 268 40 78 chr3 210386286 210386656 -7650502 - LTR38 LTR ERV1 -61 495 140 1638 186 3 0 chr3 210386758 210387048 -7650110 - Tigger1 DNA MER2_type -2127 291 1 964 295 102 50 chr3 210387249 210388077 -7649081 + L2 LINE L2 2438 3313 0 237 358 75 25 chr3 210388389 210388509 -7648649 - L2 LINE L2 -6 3266 3141 202 200 0 29 chr3 210388886 210388956 -7648202 + (TAA)n Simple_repeat Simple_repeat 1 68 0 238 292 0 15 chr3 210389335 210389400 -7647758 - MIR3 SINE MIR -40 168 105 217 234 0 0 chr3 210390403 210390450 -7646708 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 1448 219 42 0 chr3 210390468 210390751 -7646407 + AluJo SINE Alu 3 297 -15 272 229 43 0 chr3 210390751 210390821 -7646337 - L2 LINE L2 -11 3302 3230 * 292 300 33 97 chr3 210390795 210391155 -7646003 - L2 LINE L2 -462 2852 2516 23 0 0 0 chr3 210392067 210392090 -7645068 + AT_rich Low_complexity Low_complexity 1 23 0 31 26 0 0 chr3 210392163 210392201 -7644957 + AT_rich Low_complexity Low_complexity 1 38 0 857 295 76 13 chr3 210393697 210394238 -7642920 - MLT2E LTR ERVL 0 628 20 22 0 0 0 chr3 210395594 210395616 -7641542 + AT_rich Low_complexity Low_complexity 1 22 0 203 213 0 16 chr3 210396359 210396420 -7640738 + GA-rich Low_complexity Low_complexity 4 63 0 233 281 104 89 chr3 210396853 210397180 -7639978 - L1MC/D LINE L1 -498 5861 5530 196 175 0 0 chr3 210397424 210397464 -7639694 - L2 LINE L2 -3 3310 3271 181 338 118 0 chr3 210397580 210397648 -7639510 - L2 LINE L2 -210 3062 2987 1107 204 51 16 chr3 210398001 210398125 -7639033 + MER33 DNA MER1_type 1 119 -2466 2090 120 0 19 chr3 210398125 210398433 -7638725 + AluSx SINE Alu 1 302 -10 1107 204 51 16 chr3 210398433 210398621 -7638537 + MER33 DNA MER1_type 119 324 0 1719 178 36 18 chr3 210400678 210401010 -7636148 - MER44D DNA MER2_type -1 608 1 2302 225 116 62 chr3 210401359 210402506 -7634652 + L1MDb LINE L1 755 2102 -4361 1913 145 17 0 chr3 210402506 210402803 -7634355 + AluSx SINE Alu 1 302 -10 2302 225 116 62 chr3 210402803 210403246 -7633912 + L1MDb LINE L1 2102 2520 -3943 240 286 48 0 chr3 210403268 210403331 -7633827 - MIR SINE MIR -62 146 81 1904 234 102 8 chr3 210403619 210403661 -7633497 - MLT2B1 LTR ERVL 0 520 483 297 75 0 0 chr3 210403661 210403701 -7633457 + (CA)n Simple_repeat Simple_repeat 2 41 0 1904 234 102 8 chr3 210403701 210404129 -7633029 - MLT2B1 LTR ERVL -37 483 6 494 291 0 17 chr3 210405440 210405557 -7631601 + MER5B DNA MER1_type 64 178 0 260 294 15 0 chr3 210406710 210406778 -7630380 + MLT1J LTR MaLR 239 307 -204 2452 59 7 0 chr3 210407700 210408006 -7629152 + AluY SINE Alu 4 311 0 214 280 53 13 chr3 210408248 210408323 -7628835 + L2 LINE L2 3191 3268 -4 2430 4 0 0 chr3 210408945 210409207 -7627951 + AluYb8 SINE Alu 1 262 -56 17154 27 0 1 chr3 210409307 210412108 -7625050 + L1PA2 LINE L1 3356 6153 -2 442 235 0 18 chr3 210412466 210412588 -7624570 - MER33 DNA MER1_type -259 65 1 3719 164 25 8 chr3 210412790 210413496 -7623662 - L1MB3 LINE L1 -2 6181 5464 256 289 91 63 chr3 210413668 210413891 -7623267 + MIR SINE MIR 32 259 -3 2372 78 3 0 chr3 210414855 210415151 -7622007 + AluY SINE Alu 1 297 -14 21 0 0 0 chr3 210415482 210415503 -7621655 + AT_rich Low_complexity Low_complexity 1 21 0 443 293 167 0 chr3 210415831 210415981 -7621177 + MER5A DNA MER1_type 9 183 -6 204 349 72 0 chr3 210416250 210416333 -7620825 - MIR SINE MIR -161 101 13 242 255 0 0 chr3 210417422 210417487 -7619671 + C-rich Low_complexity Low_complexity 1 65 0 186 133 0 0 chr3 210418172 210418202 -7618956 + (T)n Simple_repeat Simple_repeat 1 30 0 234 0 0 0 chr3 210420270 210420296 -7616862 + (T)n Simple_repeat Simple_repeat 1 26 0 801 174 0 0 chr3 210422799 210422943 -7614215 - AluYb8 SINE Alu 0 318 175 307 220 79 113 chr3 210423112 210423289 -7613869 + HAL1 LINE L1 1427 1597 -910 250 245 0 0 chr3 210423304 210423353 -7613805 - MER2 DNA MER2_type -16 329 281 * 395 200 128 80 chr3 210423352 210423477 -7613681 + AluSp/q SINE Alu 171 262 -41 371 159 47 19 chr3 210423479 210423586 -7613572 + GA-rich Low_complexity Low_complexity 3 112 0 5030 174 40 21 chr3 210423592 210424697 -7612461 + L1MA9 LINE L1 5188 6307 -5 1070 209 15 0 chr3 210424936 210425142 -7612016 - MER2 DNA MER2_type -135 210 2 705 299 164 36 chr3 210426153 210426598 -7610560 - L2 LINE L2 -6 3307 2806 841 178 70 35 chr3 210426618 210426876 -7610282 + MER33 DNA MER1_type 9 275 -49 1366 106 5 5 chr3 210426889 210427077 -7610081 + AluSx SINE Alu 1 188 -124 627 124 190 0 chr3 210427251 210427372 -7609786 + AluSc SINE Alu 165 308 -1 1396 277 80 18 chr3 210427436 210427884 -7609274 - L2 LINE L2 -514 2800 2325 24 67 0 0 chr3 210427895 210427940 -7609218 + AT_rich Low_complexity Low_complexity 1 45 0 321 318 21 31 chr3 210428031 210428223 -7608935 - L1ME LINE L1 -477 5644 5455 22 56 0 0 chr3 210428319 210428355 -7608803 + AT_rich Low_complexity Low_complexity 1 36 0 525 331 48 4 chr3 210429196 210429428 -7607730 + MIR SINE MIR 18 257 -5 276 30 0 0 chr3 210430010 210430043 -7607115 + (TG)n Simple_repeat Simple_repeat 1 33 0 31 0 0 0 chr3 210430219 210430250 -7606908 + AT_rich Low_complexity Low_complexity 1 31 0 4954 248 57 60 chr3 210430517 210432220 -7604938 - L1M4c LINE L1 -3441 3203 1308 2077 154 3 0 chr3 210432220 210432526 -7604632 - AluSx SINE Alu 0 312 6 4954 248 57 60 chr3 210432526 210433828 -7603330 - L1M4c LINE L1 -5336 1308 4 3000 88 0 0 chr3 210433839 210434246 -7602912 - L1PA13 LINE L1 -3 6160 5754 2531 97 6 11 chr3 210434259 210434621 -7602537 - L1PB1 LINE L1 -1 6150 5791 815 173 0 0 chr3 210434639 210434766 -7602392 - AluJb SINE Alu -180 132 6 1466 178 42 4 chr3 210434776 210435148 -7602010 - L1M3 LINE L1 -619 5561 5175 623 264 31 28 chr3 210435169 210435512 -7601646 - L1ME LINE L1 -5239 1705 1362 2584 221 20 22 chr3 210435857 210436410 -7600748 + MER68 LTR ERV1 1 552 -10 288 170 0 0 chr3 210436466 210436519 -7600639 + (CA)n Simple_repeat Simple_repeat 1 53 0 252 0 0 0 chr3 210436520 210436548 -7600610 + (GA)n Simple_repeat Simple_repeat 1 28 0 250 335 43 26 chr3 210436717 210436947 -7600211 - L1ME LINE L1 -5069 1354 1121 413 305 26 79 chr3 210437340 210437720 -7599438 - L1ME LINE L1 -5920 503 144 340 224 0 40 chr3 210437725 210437801 -7599357 - Tigger5 DNA MER2_type 0 2323 2251 273 270 0 14 chr3 210437816 210437890 -7599268 - Tigger5 DNA MER2_type 0 2323 2251 227 224 0 20 chr3 210437858 210437907 -7599251 - Tigger5 DNA MER2_type -2268 55 8 * 263 247 32 0 chr3 210437917 210438010 -7599148 - L1ME LINE L1 -6286 137 42 1277 290 60 36 chr3 210438113 210438300 -7598858 - L1ME3A LINE L1 -221 5949 5768 4916 216 140 39 chr3 210438300 210439894 -7597264 + MER52A LTR ERV1 1 1755 0 1277 290 60 36 chr3 210439894 210440479 -7596679 - L1ME3A LINE L1 -402 5768 5158 224 314 29 0 chr3 210440733 210440803 -7596355 - MIR SINE MIR -101 107 36 186 191 0 0 chr3 210441121 210441163 -7595995 + A-rich Low_complexity Low_complexity 1 42 0 218 384 47 42 chr3 210441690 210442073 -7595085 + L2 LINE L2 2428 2812 -502 618 252 73 0 chr3 210442284 210442435 -7594723 - FAM SINE Alu -12 163 2 207 219 0 0 chr3 210443193 210443234 -7593924 + T-rich Low_complexity Low_complexity 1 41 0 189 381 42 17 chr3 210443377 210443495 -7593663 - MIR SINE MIR -108 154 34 2249 102 3 0 chr3 210445955 210446248 -7590910 - AluSg SINE Alu -14 296 3 347 308 90 8 chr3 210446435 210446568 -7590590 + MIR3 SINE MIR 51 194 -14 230 324 35 14 chr3 210446995 210447140 -7590018 - LTR67 LTR ERVL -3 554 407 321 304 133 13 chr3 210447271 210447429 -7589729 - HERVL LTR ERVL -1406 4248 4072 1571 234 60 19 chr3 210447654 210448262 -7588896 - L1MC/D LINE L1 -453 5789 5150 2344 56 0 68 chr3 210448262 210448584 -7588574 + AluY SINE Alu 1 300 -11 1571 234 60 19 chr3 210448584 210448659 -7588499 - L1MC/D LINE L1 -1092 5150 5079 244 296 196 45 chr3 210448822 210449021 -7588137 + MIR SINE MIR 20 248 -14 284 283 70 30 chr3 210449297 210449669 -7587489 + MLT1J2 LTR MaLR 39 450 0 694 152 0 0 chr3 210449690 210449795 -7587363 - AluSx SINE Alu -73 239 135 488 165 0 55 chr3 210449797 210449888 -7587270 - AluSx SINE Alu -225 88 3 26 107 0 0 chr3 210450022 210450125 -7587033 + AT_rich Low_complexity Low_complexity 1 103 0 1209 160 4 52 chr3 210450487 210450718 -7586440 - AluSg/x SINE Alu -8 304 85 324 305 37 65 chr3 210452903 210453086 -7584072 + MIR SINE MIR 9 182 -42 2409 123 63 19 chr3 210453928 210454342 -7582816 - MSTB1 LTR MaLR 0 432 1 1496 141 4 16 chr3 210454964 210455219 -7581939 - L1PB1 LINE L1 -5 6146 5895 8430 166 36 17 chr3 210455219 210455731 -7581427 - L1PBa LINE L1 -2133 4729 4228 6463 125 17 28 chr3 210455731 210456810 -7580348 + MER11C LTR ERVK 1 1067 -4 8430 166 36 17 chr3 210456810 210458141 -7579017 - L1PBa LINE L1 -2634 4228 2924 2304 97 7 0 chr3 210458141 210458440 -7578718 - AluY SINE Alu -10 301 1 8430 166 36 17 chr3 210458440 210459916 -7577242 - L1PBa LINE L1 -3938 2924 1339 4443 198 85 7 chr3 210459940 210461014 -7576144 - L1PBa LINE L1 -5700 1163 6 2393 95 3 0 chr3 210463789 210464094 -7573064 - AluSp SINE Alu -7 306 1 232 342 19 71 chr3 210464097 210464252 -7572906 + L2 LINE L2 2925 3071 -201 36022 34 29 1 chr3 210464913 210469545 -7567613 - L1P LINE L1 -1374 4772 13 471 316 130 5 chr3 210472051 210472266 -7564892 - MIR SINE MIR 0 262 21 * 525 308 26 53 chr3 210472258 210472524 -7564634 + L2 LINE L2 1142 1400 -1914 937 159 25 22 chr3 210472526 210472882 -7564276 + CT-rich Low_complexity Low_complexity 1 357 0 1447 302 87 27 chr3 210472883 210473698 -7563460 + L2 LINE L2 1278 2141 -1173 762 227 9 42 chr3 210473891 210474107 -7563051 + MER20 DNA MER1_type 1 209 -10 324 0 0 0 chr3 210474160 210474196 -7562962 + (TG)n Simple_repeat Simple_repeat 2 37 0 596 304 211 24 chr3 210474221 210474963 -7562195 + L2 LINE L2 2424 3309 -4 727 261 50 6 chr3 210475373 210475553 -7561605 + MER5A DNA MER1_type 2 189 0 279 0 0 0 chr3 210475722 210475753 -7561405 + (CA)n Simple_repeat Simple_repeat 2 32 0 307 310 75 40 chr3 210475767 210475941 -7561217 + MIR SINE MIR 12 191 -71 362 188 0 0 chr3 210477343 210477412 -7559746 + MER41A LTR ERV1 397 465 -89 289 312 35 46 chr3 210477778 210477951 -7559207 - MER5A DNA MER1_type -7 182 12 291 28 0 0 chr3 210478035 210478071 -7559087 + (TG)n Simple_repeat Simple_repeat 2 37 0 1715 174 0 11 chr3 210479157 210479471 -7557687 - AluSx SINE Alu 0 311 1 204 298 35 0 chr3 210479689 210479746 -7557412 - MIR3 SINE MIR -12 196 138 476 298 192 5 chr3 210480024 210480232 -7556926 + MIR SINE MIR 2 248 -14 767 311 20 8 chr3 210480716 210480960 -7556198 + MIR SINE MIR 11 257 -5 284 224 97 92 chr3 210481392 210481588 -7555570 + MLT1J LTR MaLR 95 291 -220 342 0 0 0 chr3 210481948 210481986 -7555172 + (TA)n Simple_repeat Simple_repeat 1 38 0 2253 92 31 0 chr3 210481989 210482281 -7554877 - AluSg SINE Alu -9 301 1 2259 113 0 0 chr3 210483276 210483577 -7553581 + AluSx SINE Alu 1 301 -11 933 123 22 0 chr3 210484381 210484519 -7552639 + AluSg/x SINE Alu 164 304 -8 243 363 72 47 chr3 210485521 210485714 -7551444 - MIR3 SINE MIR -8 200 3 219 69 0 0 chr3 210486095 210486124 -7551034 + (TC)n Simple_repeat Simple_repeat 1 29 0 777 184 0 22 chr3 210486128 210486264 -7550894 - FLAM_A SINE Alu 0 133 1 1736 168 4 0 chr3 210486330 210486598 -7550560 + AluSx SINE Alu 5 273 -39 22 35 0 0 chr3 210486698 210486727 -7550431 + AT_rich Low_complexity Low_complexity 1 29 0 2980 183 48 29 chr3 210486797 210487523 -7549635 + L1MB7 LINE L1 5429 6168 -16 265 337 40 10 chr3 210488972 210489073 -7548085 + MIR SINE MIR 42 145 -63 370 289 42 74 chr3 210491324 210491514 -7545644 + MIR SINE MIR 32 215 -47 716 316 64 14 chr3 210491872 210492169 -7544989 + L2 LINE L2 2862 3173 -140 180 374 32 24 chr3 210492318 210492441 -7544717 + MIR3 SINE MIR 85 208 0 21 0 0 0 chr3 210492530 210492551 -7544607 + AT_rich Low_complexity Low_complexity 1 21 0 2116 106 10 7 chr3 210492725 210493017 -7544141 - AluSx SINE Alu -19 293 1 374 239 63 63 chr3 210493683 210493769 -7543389 + MIR SINE MIR 86 174 -88 2034 145 7 0 chr3 210493769 210494065 -7543093 - AluSx SINE Alu -14 298 1 374 239 63 63 chr3 210494065 210494120 -7543038 + MIR SINE MIR 173 227 -35 412 377 67 35 chr3 210494913 210495343 -7541815 + L1MEc LINE L1 34 477 -5919 372 59 0 0 chr3 210495568 210495619 -7541539 + (CA)n Simple_repeat Simple_repeat 2 52 0 1241 326 0 90 chr3 210495845 210496179 -7540979 - AluJb SINE Alu -8 304 1 227 226 80 91 chr3 210496179 210496378 -7540780 + L1MEc LINE L1 864 1060 -5145 382 315 101 34 chr3 210497959 210498137 -7539021 - MIR3 SINE MIR -2 206 17 1565 204 14 3 chr3 210498212 210498506 -7538652 + AluJb SINE Alu 3 299 -13 2205 96 3 0 chr3 210499849 210500142 -7537016 + AluSg SINE Alu 1 294 -16 192 288 34 17 chr3 210501239 210501298 -7535860 - MIR3 SINE MIR -25 183 124 191 290 32 16 chr3 210501930 210501992 -7535166 - L2 LINE L2 -220 3052 2990 226 249 15 7 chr3 210501996 210502138 -7535020 + GA-rich Low_complexity Low_complexity 1 143 0 269 359 76 0 chr3 210502919 210503064 -7534094 + MIR SINE MIR 28 183 -79 321 265 29 37 chr3 210503170 210503306 -7533852 + Charlie8 DNA MER1_type 107 241 -2176 1443 203 35 69 chr3 210503712 210504116 -7533042 + MLT1B LTR MaLR 1 390 0 24 67 0 0 chr3 210504355 210504400 -7532758 + AT_rich Low_complexity Low_complexity 1 45 0 2701 26 0 0 chr3 210504738 210505044 -7532114 - AluYa5 SINE Alu -5 306 1 1900 183 11 8 chr3 210505441 210505813 -7531345 + L1MC1 LINE L1 5943 6315 -18 2368 74 0 3 chr3 210505823 210506119 -7531039 + AluY SINE Alu 1 295 -16 26 50 0 0 chr3 210506589 210506629 -7530529 + AT_rich Low_complexity Low_complexity 1 40 0 261 143 48 9 chr3 210506686 210506791 -7530367 + (TA)n Simple_repeat Simple_repeat 1 109 0 410 323 65 30 chr3 210507416 210507617 -7529541 - L3 LINE CR1 -368 1209 1002 253 388 74 16 chr3 210509162 210509283 -7527875 - L2 LINE L2 -4 3268 3141 275 144 17 65 chr3 210509571 210509628 -7527530 - L1MA8 LINE L1 -13 6278 6231 1435 183 84 9 chr3 210509628 210509951 -7527207 + MER7A DNA MER2_type 1 345 -1 275 144 17 65 chr3 210509951 210509965 -7527193 - L1MA8 LINE L1 -60 6231 6218 1697 191 24 35 chr3 210509990 210510041 -7527117 - L1MA8 LINE L1 -27 6264 6214 222 37 0 0 chr3 210510041 210510068 -7527090 + (CA)n Simple_repeat Simple_repeat 2 28 0 1697 191 24 35 chr3 210510068 210510440 -7526718 - L1MA8 LINE L1 -77 6214 5846 612 120 20 10 chr3 210510443 210510543 -7526615 + L1M1 LINE L1 5673 5773 -527 2295 113 0 3 chr3 210511932 210512241 -7524917 + AluSp SINE Alu 1 308 -5 273 254 64 82 chr3 210513408 210513518 -7523640 + MIR3 SINE MIR 95 202 -6 1965 118 3 43 chr3 210514304 210514608 -7522550 + AluSx SINE Alu 1 292 -20 211 240 117 91 chr3 210514882 210515036 -7522122 + MIR3 SINE MIR 25 182 -26 189 288 90 79 chr3 210516939 210517116 -7520042 + MIR SINE MIR 64 242 -20 243 0 0 0 chr3 210517403 210517430 -7519728 + (TG)n Simple_repeat Simple_repeat 2 28 0 1381 181 0 110 chr3 210517836 210518172 -7518986 - AluJb SINE Alu -2 300 2 722 219 0 0 chr3 210518541 210518678 -7518480 + MER3 DNA MER1_type 1 137 -72 2011 157 0 10 chr3 210518874 210519207 -7517951 + AluSx SINE Alu 1 330 0 238 356 129 20 chr3 210521324 210521526 -7515632 + MIR SINE MIR 29 252 -10 290 334 62 46 chr3 210521683 210522046 -7515112 - L2 LINE L2 -233 3039 2685 386 347 30 20 chr3 210523224 210523423 -7513735 + MLT1J LTR MaLR 1 201 -310 198 143 0 0 chr3 210523497 210523532 -7513626 + (CAT)n Simple_repeat Simple_repeat 1 35 0 640 301 84 21 chr3 210523532 210523771 -7513387 + MLT1J LTR MaLR 258 511 0 274 311 88 40 chr3 210523964 210524112 -7513046 - MIR SINE MIR -56 206 52 1017 268 152 30 chr3 210524264 210524771 -7512387 + L1MEc LINE L1 36 604 -5792 306 269 120 18 chr3 210524947 210525114 -7512044 - L2 LINE L2 -65 3248 3065 1149 289 134 14 chr3 210525152 210525650 -7511508 - L2 LINE L2 -415 2899 2342 2158 109 0 3 chr3 210525694 210525997 -7511161 - AluSq SINE Alu -11 302 1 303 355 90 7 chr3 210527738 210527893 -7509265 - MIR SINE MIR -59 203 36 393 316 82 36 chr3 210528402 210528598 -7508560 - MIR SINE MIR -10 252 48 441 278 129 93 chr3 210529175 210529571 -7507587 + LTR16A LTR ERVL 25 434 -16 236 350 101 55 chr3 210529806 210530240 -7506918 - L3 LINE CR1 -30 1547 1094 276 282 42 0 chr3 210530254 210530325 -7506833 - L2 LINE L2 0 3272 3199 21 0 0 0 chr3 210530792 210530813 -7506345 + AT_rich Low_complexity Low_complexity 1 21 0 308 317 155 0 chr3 210530987 210531129 -7506029 - MIR3 SINE MIR -11 197 34 852 270 19 23 chr3 210531307 210531570 -7505588 + MIR SINE MIR 1 262 0 2293 104 13 0 chr3 210532094 210532403 -7504755 - AluSp SINE Alu 0 313 1 2403 127 72 5 chr3 210532585 210532986 -7504172 + MSTA LTR MaLR 1 428 0 2121 126 0 16 chr3 210533344 210533653 -7503505 - AluSx SINE Alu -6 306 3 374 276 110 35 chr3 210533687 210533832 -7503326 - MER5B DNA MER1_type -1 177 22 797 184 43 54 chr3 210533868 210534053 -7503105 + MER5A DNA MER1_type 7 189 0 296 357 76 31 chr3 210534316 210534607 -7502551 + L2 LINE L2 2566 2869 -445 22 0 0 0 chr3 210537317 210537339 -7499819 + AT_rich Low_complexity Low_complexity 1 22 0 482 261 17 0 chr3 210537817 210537936 -7499222 - MER94 DNA DNA -3 131 11 222 118 0 0 chr3 210538504 210538538 -7498620 + (ATG)n Simple_repeat Simple_repeat 3 36 0 284 348 26 0 chr3 210538912 210539027 -7498131 + MIR SINE MIR 106 223 -39 365 331 23 8 chr3 210539139 210539272 -7497886 - MER5A DNA MER1_type 0 189 55 3019 170 35 17 chr3 210539742 210540343 -7496815 + L1MB7 LINE L1 5504 6115 -69 1908 167 11 45 chr3 210540816 210540956 -7496202 + MLT1A1 LTR MaLR 1 144 -221 941 182 40 20 chr3 210540956 210541203 -7495955 + L1MA8 LINE L1 6038 6289 -2 1908 167 11 45 chr3 210541203 210541440 -7495718 + MLT1A1 LTR MaLR 144 365 0 264 59 0 0 chr3 210541851 210541885 -7495273 + (A)n Simple_repeat Simple_repeat 1 34 0 1386 157 52 3 chr3 210542266 210542552 -7494606 + L1MA7 LINE L1 5987 6286 -5 258 257 0 14 chr3 210543203 210543273 -7493885 - MIR SINE MIR -65 197 129 22 0 0 0 chr3 210543428 210543450 -7493708 + AT_rich Low_complexity Low_complexity 1 22 0 284 229 73 52 chr3 210544299 210544395 -7492763 + MER5A DNA MER1_type 9 106 -83 345 94 10 177 chr3 210545726 210545757 -7491401 + MADE1 DNA Mariner 1 36 -44 2095 126 0 0 chr3 210545757 210546050 -7491108 + AluSx SINE Alu 1 293 -19 345 94 10 177 chr3 210546050 210546114 -7491044 + MADE1 DNA Mariner 36 80 0 297 0 0 0 chr3 210546783 210546816 -7490342 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 13236 215 30 22 chr3 210546816 210549589 -7487569 - L1PA15 LINE L1 -5 6811 4061 1994 113 0 53 chr3 210549589 210549891 -7487267 - AluSc SINE Alu -23 286 1 13236 215 30 22 chr3 210549891 210552629 -7484529 - L1PA15 LINE L1 -2755 4061 1233 2035 150 3 32 chr3 210553759 210554106 -7483052 + MER1B DNA MER1_type 1 337 0 953 280 96 23 chr3 210555125 210555564 -7481594 + HAL1b LINE L1 307 777 -571 419 219 98 32 chr3 210555982 210556105 -7481053 + L2 LINE L2 3182 3312 -1 318 306 75 24 chr3 210556193 210556526 -7480632 + L1MC4a LINE L1 2894 3243 -2903 743 198 141 16 chr3 210556528 210556720 -7480438 - MER20 DNA MER1_type 0 219 4 21 82 0 0 chr3 210556891 210556940 -7480218 + AT_rich Low_complexity Low_complexity 1 49 0 389 265 60 97 chr3 210557436 210557812 -7479346 + L1MC4a LINE L1 4591 4948 -1198 873 311 92 31 chr3 210558253 210558870 -7478288 + L1MC4a LINE L1 5399 6053 -1755 1628 172 14 21 chr3 210559375 210559543 -7477615 - AluJo SINE Alu -23 289 122 207 0 0 0 chr3 210559543 210559566 -7477592 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1628 172 14 21 chr3 210559566 210559688 -7477470 - AluJo SINE Alu -190 122 1 245 318 85 54 chr3 210559828 210559957 -7477201 - L2 LINE L2 -5 3308 3176 26 30 0 0 chr3 210560444 210560477 -7476681 + AT_rich Low_complexity Low_complexity 1 33 0 2181 105 7 3 chr3 210560813 210561109 -7476049 + AluSq SINE Alu 2 298 -15 494 138 25 0 chr3 210561110 210561190 -7475968 + GA-rich Low_complexity Low_complexity 1 82 0 953 125 0 27 chr3 210561190 210561374 -7475784 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 2128 78 11 4 chr3 210561635 210561955 -7475203 - AluSp SINE Alu 0 322 1 32 43 0 0 chr3 210562029 210562075 -7475083 + AT_rich Low_complexity Low_complexity 1 46 0 251 325 116 44 chr3 210562297 210562756 -7474402 - L1MEd LINE L1 -5556 563 72 217 281 146 45 chr3 210563551 210563750 -7473408 + L3 LINE CR1 1296 1514 -63 1187 156 0 33 chr3 210564381 210564592 -7472566 + AluJb SINE Alu 87 290 -22 220 299 15 0 chr3 210564980 210565047 -7472111 + L2 LINE L2 3204 3271 -1 24 67 0 0 chr3 210566299 210566344 -7470814 + AT_rich Low_complexity Low_complexity 1 45 0 1660 234 37 23 chr3 210567205 210567722 -7469436 + L1ME3 LINE L1 5555 6078 -84 2113 127 0 6 chr3 210567983 210568349 -7468809 + AluSx SINE Alu 1 364 0 271 214 14 29 chr3 210569224 210569294 -7467864 + GA-rich Low_complexity Low_complexity 4 72 0 3177 121 28 4 chr3 210569708 210570239 -7466919 - L1MA8 LINE L1 -6 6285 5742 248 256 149 33 chr3 210570339 210570460 -7466698 + L3 LINE CR1 1441 1575 -2 604 277 40 47 chr3 210570807 210571060 -7466098 + MIR SINE MIR 12 262 0 22 0 0 0 chr3 210571075 210571097 -7466061 + AT_rich Low_complexity Low_complexity 1 22 0 204 214 43 0 chr3 210572224 210572294 -7464864 + (TA)n Simple_repeat Simple_repeat 2 74 0 24 0 0 0 chr3 210573819 210573843 -7463315 + AT_rich Low_complexity Low_complexity 1 24 0 216 0 0 0 chr3 210573880 210573904 -7463254 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1774 167 10 0 chr3 210573980 210574273 -7462885 + AluSx SINE Alu 1 296 -16 1587 199 64 0 chr3 210578259 210578585 -7458573 + MER7A DNA MER2_type 2 346 0 201 321 54 45 chr3 210578865 210578977 -7458181 + L2 LINE L2 3155 3267 -5 239 258 383 16 chr3 210579139 210579267 -7457891 + MER5A DNA MER1_type 9 183 -6 313 256 83 17 chr3 210579281 210579476 -7457682 + MER5B DNA MER1_type 1 178 0 469 203 32 24 chr3 210580341 210580464 -7456694 - MIR SINE MIR -56 206 83 1320 214 22 65 chr3 210581273 210581628 -7455530 + MER58B DNA MER1_type 1 340 -1 214 270 263 33 chr3 210581683 210581835 -7455323 + MIR SINE MIR 63 249 -13 320 356 69 56 chr3 210581863 210582169 -7454989 + L2 LINE L2 2962 3271 -1 258 32 0 0 chr3 210582601 210582632 -7454526 + (CA)n Simple_repeat Simple_repeat 1 31 0 187 161 36 0 chr3 210583337 210583393 -7453765 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 2480 164 26 2 chr3 210584218 210584634 -7452524 + MSTB LTR MaLR 1 426 0 2060 132 0 22 chr3 210584704 210585022 -7452136 - AluSx SINE Alu -1 311 1 455 237 188 36 chr3 210585205 210585429 -7451729 + MIR SINE MIR 4 261 -1 429 291 40 36 chr3 210585499 210585722 -7451436 - L1ME LINE L1 -298 5823 5600 498 165 0 0 chr3 210586539 210586642 -7450516 + GA-rich Low_complexity Low_complexity 3 105 0 181 292 0 0 chr3 210589436 210589484 -7447674 + L2 LINE L2 3266 3313 0 210 115 58 0 chr3 210590359 210590411 -7446747 + GA-rich Low_complexity Low_complexity 2 56 0 1250 163 50 6 chr3 210590923 210591349 -7445809 + LTR54 LTR ERV1 4 508 -2 3463 156 29 20 chr3 210592333 210592980 -7444178 + MER39B LTR ERV1 1 653 0 2293 86 0 0 chr3 210593571 210593863 -7443295 - AluSg SINE Alu -18 292 1 216 0 0 0 chr3 210595033 210595057 -7442101 + (TA)n Simple_repeat Simple_repeat 1 24 0 791 258 81 0 chr3 210595199 210595397 -7441761 - MIR SINE MIR -34 228 15 509 241 38 8 chr3 210595542 210595675 -7441483 + MIR3 SINE MIR 63 199 -9 24 53 0 0 chr3 210596208 210596246 -7440912 + AT_rich Low_complexity Low_complexity 1 38 0 675 270 73 0 chr3 210596352 210596556 -7440602 - MIR SINE MIR -1 261 43 1781 209 66 30 chr3 210596878 210597319 -7439839 - MLT1C LTR MaLR 0 467 11 268 246 213 49 chr3 210597964 210598086 -7439072 + L2 LINE L2 3172 3313 0 185 81 0 54 chr3 210598086 210598123 -7439035 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 182 91 30 0 chr3 210598468 210598501 -7438657 + (TA)n Simple_repeat Simple_repeat 2 35 0 285 177 97 0 chr3 210598582 210598644 -7438514 - L1MC2 LINE L1 -20 6324 6257 421 343 0 0 chr3 210601026 210601160 -7435998 - MIR SINE MIR -109 153 20 186 379 63 48 chr3 210601709 210601915 -7435243 - L2 LINE L2 -58 3214 3006 319 398 0 0 chr3 210603495 210603618 -7433540 - L2 LINE L2 -9 3263 3141 22 35 0 0 chr3 210604250 210604279 -7432879 + AT_rich Low_complexity Low_complexity 1 29 0 597 312 35 0 chr3 210604978 210605177 -7431981 - L2 LINE L2 0 3313 3108 186 356 159 0 chr3 210605463 210605595 -7431563 + MIR SINE MIR 104 256 -6 21 0 0 0 chr3 210605660 210605681 -7431477 + AT_rich Low_complexity Low_complexity 1 21 0 329 333 67 0 chr3 210605696 210605831 -7431327 - MIR SINE MIR -70 192 49 1310 171 70 0 chr3 210605847 210606133 -7431025 + L1MA7 LINE L1 5984 6289 -2 292 306 8 8 chr3 210606714 210606835 -7430323 + (TA)n Simple_repeat Simple_repeat 2 122 0 1750 194 0 7 chr3 210607101 210607405 -7429753 + AluJb SINE Alu 1 302 -10 1613 169 7 18 chr3 210608591 210608870 -7428288 - AluJo SINE Alu -24 288 13 649 249 89 6 chr3 210609572 210609741 -7427417 - MLT1A1 LTR MaLR 0 365 183 * 1970 119 45 42 chr3 210609723 210610076 -7427082 + THE1B LTR MaLR 8 361 -3 907 175 63 5 chr3 210610076 210610264 -7426894 - MLT1A1 LTR MaLR -166 199 1 202 340 0 0 chr3 210611025 210611078 -7426080 - MIR SINE MIR -126 82 30 31 0 0 0 chr3 210611654 210611685 -7425473 + AT_rich Low_complexity Low_complexity 1 31 0 1740 142 6 77 chr3 210611685 210612008 -7425150 - AluJb SINE Alu -12 300 1 1992 164 0 0 chr3 210612015 210612326 -7424832 - AluJb SINE Alu -1 311 1 21 0 0 0 chr3 210613059 210613080 -7424078 + AT_rich Low_complexity Low_complexity 1 21 0 257 333 115 0 chr3 210613817 210613904 -7423254 + L2 LINE L2 3149 3245 -27 205 262 16 0 chr3 210613940 210614001 -7423157 + (TTCA)n Simple_repeat Simple_repeat 3 64 0 1953 188 28 37 chr3 210614196 210614271 -7422887 - MSTB1 LTR MaLR 0 432 358 1935 122 35 7 chr3 210614271 210614559 -7422599 + AluSx SINE Alu 1 296 -16 1953 188 28 37 chr3 210614559 210614919 -7422239 - MSTB1 LTR MaLR -74 358 1 639 174 20 34 chr3 210616383 210616532 -7420626 + Charlie4 DNA MER1_type 1815 1961 0 1614 163 65 4 chr3 210616540 210616817 -7420341 + AluSx SINE Alu 3 296 -16 611 353 69 27 chr3 210617194 210617528 -7419630 - L2 LINE L2 0 3272 2925 214 325 34 8 chr3 210617966 210618083 -7419075 + MIR3 SINE MIR 70 189 -19 204 311 111 11 chr3 210618600 210618690 -7418468 - L2 LINE L2 -258 3014 2916 209 313 31 75 chr3 210619511 210619671 -7417487 + MIR SINE MIR 64 216 -46 21 57 0 0 chr3 210620397 210620432 -7416726 + AT_rich Low_complexity Low_complexity 1 35 0 228 319 35 60 chr3 210620668 210620784 -7416374 + L2 LINE L2 3197 3309 -4 270 281 8 55 chr3 210620796 210620924 -7416234 + GA-rich Low_complexity Low_complexity 3 124 0 210 37 0 0 chr3 210621484 210621511 -7415647 + (TA)n Simple_repeat Simple_repeat 2 28 0 2120 74 0 0 chr3 210621659 210621916 -7415242 - AluY SINE Alu -6 305 49 21 0 0 0 chr3 210621954 210621975 -7415183 + AT_rich Low_complexity Low_complexity 1 21 0 660 178 0 0 chr3 210622275 210622382 -7414776 + FLAM_C SINE Alu 1 107 -36 197 291 63 13 chr3 210622645 210622724 -7414434 + MIR3 SINE MIR 121 203 -5 27 29 0 0 chr3 210622735 210622769 -7414389 + AT_rich Low_complexity Low_complexity 1 34 0 31 57 0 14 chr3 210624162 210624200 -7412958 + AT_rich Low_complexity Low_complexity 1 39 -30 2142 90 10 13 chr3 210624200 210624500 -7412658 + AluSp SINE Alu 1 299 -14 31 57 0 14 chr3 210624500 210624531 -7412627 + AT_rich Low_complexity Low_complexity 39 69 0 198 338 84 89 chr3 210625252 210625477 -7411681 - L2 LINE L2 -54 3218 2995 3933 190 46 16 chr3 210626930 210627725 -7409433 - L1MB7 LINE L1 -6 6178 5332 480 35 0 0 chr3 210627725 210627783 -7409375 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 3933 190 46 16 chr3 210627783 210628148 -7409010 - L1MB7 LINE L1 -852 5332 4980 233 143 0 20 chr3 210628148 210628197 -7408961 - L1MB7 LINE L1 -1132 5014 4967 626 82 0 0 chr3 210628481 210628566 -7408592 + AluY SINE Alu 212 296 -15 183 304 103 43 chr3 210628816 210629000 -7408158 + L2 LINE L2 2995 3189 -124 21 0 0 0 chr3 210629060 210629081 -7408077 + AT_rich Low_complexity Low_complexity 1 21 0 1259 232 27 40 chr3 210629666 210630036 -7407122 + MLT1A1 LTR MaLR 1 365 0 216 191 0 0 chr3 210630071 210630118 -7407040 + A-rich Low_complexity Low_complexity 1 47 0 404 295 14 50 chr3 210630667 210630806 -7406352 + MER94 DNA DNA 1 134 0 313 286 10 20 chr3 210631732 210631830 -7405328 - MLT1K LTR MaLR -25 563 467 20917 169 30 15 chr3 210631992 210634769 -7402389 + L1MA3 LINE L1 17 2751 -4814 270 0 0 0 chr3 210634769 210634799 -7402359 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 20917 169 30 15 chr3 210634799 210635118 -7402040 + L1MA3 LINE L1 2751 3064 -4501 2120 107 7 0 chr3 210635118 210635425 -7401733 + AluSx SINE Alu 1 309 0 20917 169 30 15 chr3 210635425 210638298 -7398860 + L1MA3 LINE L1 3064 6092 -1473 207 69 0 0 chr3 210638298 210638327 -7398831 + (CA)n Simple_repeat Simple_repeat 1 29 0 20917 169 30 15 chr3 210638327 210638704 -7398454 + L1MA3 LINE L1 6092 6462 -1103 4873 150 47 18 chr3 210638707 210639600 -7397558 + L1MA3 LINE L1 6744 7609 -115 1776 154 7 3 chr3 210639600 210639886 -7397272 + AluSx SINE Alu 1 287 -25 201 39 0 0 chr3 210639886 210639912 -7397246 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 4873 150 47 18 chr3 210639912 210639969 -7397189 + L1MA3 LINE L1 7608 7723 -1 23 0 0 0 chr3 210639969 210639992 -7397166 + AT_rich Low_complexity Low_complexity 1 23 0 484 320 43 30 chr3 210640252 210640483 -7396675 - MIR SINE MIR -17 245 12 222 349 65 9 chr3 210642807 210642985 -7394173 + MIR SINE MIR 2 189 -73 1057 223 5 0 chr3 210643503 210643705 -7393453 - AluJb SINE Alu -23 289 87 1041 276 89 36 chr3 210644033 210644471 -7392687 + MER77 LTR ERV1 136 596 -9 248 254 14 42 chr3 210644459 210644530 -7392628 + MER21A LTR ERV1 673 741 -190 * 292 420 0 0 chr3 210644580 210644692 -7392466 + L2 LINE L2 3198 3309 -4 197 310 17 0 chr3 210644847 210644905 -7392253 - L2 LINE L2 -8 3264 3206 3436 195 48 78 chr3 210645825 210646389 -7390769 + L1MB2 LINE L1 4418 4997 -1174 879 104 0 0 chr3 210646389 210646538 -7390620 + AluSc SINE Alu 175 323 0 3436 195 48 78 chr3 210646538 210647562 -7389596 + L1MB2 LINE L1 4997 6064 -107 313 299 76 41 chr3 210647563 210647854 -7389304 + L1MEc LINE L1 1763 2001 -4539 21 0 0 0 chr3 210648145 210648166 -7388992 + AT_rich Low_complexity Low_complexity 1 21 0 2089 219 78 13 chr3 210649495 210650098 -7387060 - LTR48B LTR ERV1 0 644 3 219 379 38 8 chr3 210650503 210650635 -7386523 - MIR3 SINE MIR -53 155 20 279 362 141 22 chr3 210651358 210651543 -7385615 + MIR3 SINE MIR 2 208 0 308 294 76 0 chr3 210651890 210651982 -7385176 - L1MC4 LINE L1 -1330 6712 6614 385 300 113 19 chr3 210653356 210653516 -7383642 + MIR SINE MIR 20 194 -68 182 268 101 72 chr3 210653708 210653846 -7383312 - MIR SINE MIR -32 230 89 1225 102 0 6 chr3 210653969 210654135 -7383023 - AluSg SINE Alu -105 205 41 351 294 117 65 chr3 210654201 210654586 -7382572 + MLT1J LTR MaLR 105 509 -2 2363 178 14 15 chr3 210656497 210657015 -7380143 + L1 LINE L1 4887 5403 -743 1046 229 70 15 chr3 210657028 210657430 -7379728 + MER69 DNA AcHobo 2095 2518 -8 253 361 31 10 chr3 210657741 210657838 -7379320 - L2 LINE L2 0 3272 3174 214 338 15 0 chr3 210657922 210657990 -7379168 + L2 LINE L2 3204 3272 0 1605 177 6 41 chr3 210658280 210658596 -7378562 + AluJo SINE Alu 1 305 -7 278 148 19 0 chr3 210658772 210658826 -7378332 + GA-rich Low_complexity Low_complexity 3 57 0 874 35 86 0 chr3 210659789 210659905 -7377253 + MER85 DNA T2_type 13 138 -1 270 314 12 12 chr3 210660932 210661018 -7376140 - L2 LINE L2 -36 3236 3151 315 248 53 98 chr3 210661052 210661185 -7375973 - MIR SINE MIR -118 144 18 2707 7 3 0 chr3 210661196 210661494 -7375664 + AluY SINE Alu 1 299 -12 182 362 71 20 chr3 210661870 210662066 -7375092 + L2 LINE L2 2626 2831 -483 264 279 115 16 chr3 210662473 210662595 -7374563 + MER117 DNA MER1_type 27 160 -37 529 282 80 0 chr3 210662809 210662972 -7374186 + MER5B DNA MER1_type 2 177 -1 398 209 132 0 chr3 210663058 210663149 -7374009 + MER5A DNA MER1_type 4 106 -83 334 325 16 16 chr3 210663685 210663808 -7373350 - MIR SINE MIR -111 151 29 25 95 0 0 chr3 210664213 210664287 -7372871 + AT_rich Low_complexity Low_complexity 1 74 0 708 340 40 4 chr3 210664486 210664739 -7372419 + MIR SINE MIR 1 262 0 614 182 50 25 chr3 210665670 210665791 -7371367 - L2 LINE L2 0 3313 3190 1302 275 71 33 chr3 210666170 210666829 -7370329 - L2 LINE L2 -114 3199 2522 257 315 0 56 chr3 210666971 210667079 -7370079 - MIR3 SINE MIR -6 202 101 327 302 9 0 chr3 210667090 210667196 -7369962 - MIR SINE MIR -133 129 23 317 206 16 0 chr3 210667915 210667978 -7369180 + MER5B DNA MER1_type 115 178 0 341 190 9 95 chr3 210668137 210668253 -7368905 + MER2 DNA MER2_type 1 106 -239 2166 130 3 0 chr3 210668591 210668891 -7368267 - AluSg SINE Alu -5 305 5 1818 162 55 18 chr3 210669154 210669592 -7367566 - Charlie1 DNA MER1_type 0 2761 2308 605 224 11 82 chr3 210669588 210669771 -7367387 - Charlie1 DNA MER1_type -2591 170 1 * 458 310 117 26 chr3 210669771 210670182 -7366976 + L2 LINE L2 2605 3054 -218 474 282 70 7 chr3 210670195 210670337 -7366821 - MIR SINE MIR -111 151 1 228 157 39 20 chr3 210670975 210671026 -7366132 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 1964 227 52 14 chr3 210671122 210671676 -7365482 - MER90 LTR ERV1 0 575 1 540 243 28 28 chr3 210672616 210672834 -7364324 + L1MD3 LINE L1 7767 7984 -11 2279 108 0 0 chr3 210672840 210673136 -7364022 + AluSc SINE Alu 1 296 -13 423 69 0 0 chr3 210673169 210673227 -7363931 + Alu SINE Alu 239 296 -15 386 276 84 44 chr3 210673267 210673470 -7363688 - L2 LINE L2 -2 3311 3101 276 280 74 39 chr3 210673508 210673765 -7363393 + L1ME3A LINE L1 5683 5948 -222 21 0 0 0 chr3 210673901 210673922 -7363236 + AT_rich Low_complexity Low_complexity 1 21 0 32 75 0 0 chr3 210673992 210674059 -7363099 + AT_rich Low_complexity Low_complexity 1 67 0 210 91 0 0 chr3 210674112 210674145 -7363013 + (TG)n Simple_repeat Simple_repeat 1 33 0 21 36 0 0 chr3 210674449 210674477 -7362681 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr3 210674853 210674882 -7362276 + AT_rich Low_complexity Low_complexity 1 29 0 28 71 0 0 chr3 210675501 210675557 -7361601 + AT_rich Low_complexity Low_complexity 1 56 0 189 107 0 0 chr3 210675597 210675625 -7361533 + (TA)n Simple_repeat Simple_repeat 2 29 0 198 0 0 0 chr3 210676820 210676842 -7360316 + (A)n Simple_repeat Simple_repeat 1 22 0 704 269 144 9 chr3 210676913 210677233 -7359925 + Tigger8 DNA MER2_type 67 429 -237 242 282 0 39 chr3 210677242 210677320 -7359838 - L2 LINE L2 0 3272 3198 2009 60 0 15 chr3 210677889 210678156 -7359002 - L1PA6 LINE L1 -5 6149 5887 28 48 0 0 chr3 210678839 210678881 -7358277 + AT_rich Low_complexity Low_complexity 1 42 0 258 288 14 0 chr3 210680370 210680443 -7356715 + MIR3 SINE MIR 129 202 -6 268 386 22 33 chr3 210681096 210681280 -7355878 + MIR3 SINE MIR 17 198 -10 276 111 0 0 chr3 210683724 210683769 -7353389 + (TGGA)n Simple_repeat Simple_repeat 3 47 0 192 40 0 0 chr3 210683793 210683818 -7353340 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 26 0 0 0 chr3 210684535 210684561 -7352597 + GC_rich Low_complexity Low_complexity 1 26 0 214 49 24 24 chr3 210685145 210685186 -7351972 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 229 239 7 29 chr3 210686385 210686478 -7350680 + CT-rich Low_complexity Low_complexity 1 90 0 338 229 74 66 chr3 210688130 210688252 -7348906 - MER5A DNA MER1_type -22 167 45 899 240 24 0 chr3 210689475 210689683 -7347475 - MIR SINE MIR -46 216 4 300 329 50 16 chr3 210689797 210689969 -7347189 - MIR SINE MIR -55 207 30 396 293 49 8 chr3 210690557 210690680 -7346478 + L2 LINE L2 3186 3313 0 405 0 0 0 chr3 210690979 210691024 -7346134 + (CA)n Simple_repeat Simple_repeat 1 45 0 204 338 0 0 chr3 210691733 210691807 -7345351 + (TGAA)n Simple_repeat Simple_repeat 3 76 0 2205 107 7 0 chr3 210692842 210693141 -7344017 - AluY SINE Alu -10 301 1 22 0 0 0 chr3 210693598 210693620 -7343538 + AT_rich Low_complexity Low_complexity 1 22 0 349 280 121 22 chr3 210693656 210693838 -7343320 - L2 LINE L2 -527 2787 2588 22 56 0 0 chr3 210694363 210694399 -7342759 + AT_rich Low_complexity Low_complexity 1 36 0 205 288 58 43 chr3 210694593 210694732 -7342426 - L2 LINE L2 -936 2378 2238 1225 303 80 28 chr3 210694954 210695558 -7341600 - MER115 DNA AcHobo 0 693 59 221 200 33 17 chr3 210695597 210695657 -7341501 - MIR SINE MIR -104 158 98 25 65 0 0 chr3 210696229 210696275 -7340883 + AT_rich Low_complexity Low_complexity 1 46 0 185 283 0 0 chr3 210696470 210696516 -7340642 - L2 LINE L2 -12 3301 3256 1504 148 3 121 chr3 210697182 210697512 -7339646 + AluJb SINE Alu 5 295 -7 2453 76 0 0 chr3 210698110 210698412 -7338746 - AluY SINE Alu -9 302 1 2243 162 16 5 chr3 210699239 210699642 -7337516 + MSTB LTR MaLR 13 426 -6 327 225 20 81 chr3 210700027 210700126 -7337032 + MIR SINE MIR 79 172 -36 2760 75 3 0 chr3 210700304 210700666 -7336492 + L1PA7 LINE L1 5790 6152 -2 1559 228 31 3 chr3 210701014 210701373 -7335785 + MSTB1 LTR MaLR 1 369 -63 2092 103 17 0 chr3 210701373 210701664 -7335494 - AluSx SINE Alu -16 296 1 26 50 0 0 chr3 210701909 210701949 -7335209 + AT_rich Low_complexity Low_complexity 1 40 0 27 87 0 0 chr3 210702023 210702092 -7335066 + AT_rich Low_complexity Low_complexity 1 69 0 1309 215 7 25 chr3 210702472 210702746 -7334412 - AluJo SINE Alu -24 288 20 1991 56 0 0 chr3 210703242 210703492 -7333666 + L1PA5 LINE L1 5905 6154 0 211 293 17 0 chr3 210703898 210703956 -7333202 + L2 LINE L2 2988 3046 -226 282 335 108 51 chr3 210704075 210704371 -7332787 - L2 LINE L2 -7 3265 2953 699 201 39 13 chr3 210704675 210704829 -7332329 + MLT1J1 LTR MaLR 1 158 -288 2144 119 14 0 chr3 210706713 210707008 -7330150 + AluSx SINE Alu 13 311 -1 913 174 92 5 chr3 210708132 210708339 -7328819 + MER33 DNA MER1_type 1 225 -99 270 229 10 31 chr3 210708403 210708499 -7328659 + MER33 DNA MER1_type 270 363 0 324 260 0 73 chr3 210709428 210709620 -7327538 + A-rich Low_complexity Low_complexity 1 178 0 633 244 73 60 chr3 210709817 210710051 -7327107 + MIR SINE MIR 26 262 0 187 204 41 20 chr3 210711271 210711320 -7325838 - MIR3 SINE MIR -54 154 105 493 323 107 47 chr3 210712060 210712398 -7324760 - L2 LINE L2 -1 3271 2914 694 250 26 0 chr3 210712407 210712559 -7324599 - MER58B DNA MER1_type -1 340 185 430 278 121 18 chr3 210712714 210712937 -7324221 + L2 LINE L2 2935 3180 -133 274 291 19 19 chr3 210713455 210713558 -7323600 + MIR3 SINE MIR 105 207 -1 964 169 7 0 chr3 210714180 210714334 -7322824 - FRAM SINE Alu -21 155 1 409 261 35 17 chr3 210714800 210714915 -7322243 + MIR3 SINE MIR 82 198 -10 184 224 30 75 chr3 210716233 210716300 -7320858 + L2 LINE L2 3209 3272 0 204 240 20 0 chr3 210716519 210716569 -7320589 - L2 LINE L2 -25 3247 3197 799 53 9 9 chr3 210716822 210716936 -7320222 + (TTTC)n Simple_repeat Simple_repeat 1 114 0 1914 131 4 4 chr3 210716936 210717211 -7319947 - AluJo SINE Alu -35 277 3 254 48 0 48 chr3 210717561 210717603 -7319555 - L1PA15 LINE L1 -9 6156 6117 411 269 94 18 chr3 210767937 210768108 -7269050 - MER5A DNA MER1_type -1 188 5 375 239 0 11 chr3 210768138 210768226 -7268932 - MER5B DNA MER1_type -91 87 1 194 316 51 13 chr3 210768566 210768645 -7268513 - L2 LINE L2 -532 2782 2701 2244 97 0 34 chr3 210769001 210769321 -7267837 + AluSg1 SINE Alu 1 309 0 211 278 83 53 chr3 210770935 210771068 -7266090 - L3b LINE CR1 -257 1326 1190 575 312 61 71 chr3 210771071 210771285 -7265873 - L2 LINE L2 -2 3270 3060 2303 91 0 7 chr3 210771285 210771583 -7265575 + AluSg1 SINE Alu 1 296 -13 575 312 61 71 chr3 210771583 210771746 -7265412 - L2 LINE L2 -212 3060 2897 254 308 109 70 chr3 210771773 210772085 -7265073 - L2 LINE L2 -509 2805 2482 370 323 0 10 chr3 210772679 210772775 -7264383 + MIR SINE MIR 46 140 -68 482 250 42 8 chr3 210772935 210773055 -7264103 + MIR SINE MIR 16 139 -69 184 337 58 0 chr3 210773775 210773861 -7263297 + L2 LINE L2 3160 3250 -22 2316 90 0 7 chr3 210774399 210774698 -7262460 - AluSg SINE Alu -13 297 1 23 0 0 0 chr3 210774998 210775021 -7262137 + AT_rich Low_complexity Low_complexity 1 23 0 394 289 20 80 chr3 210776702 210776903 -7260255 + MER5A DNA MER1_type 1 189 0 254 315 116 24 chr3 210778157 210778449 -7258709 + L2 LINE L2 661 979 -2335 204 311 121 53 chr3 210778627 210778759 -7258399 + L2 LINE L2 3168 3308 -5 761 225 74 90 chr3 210779346 210779718 -7257440 - L1ME3 LINE L1 -71 6091 5717 217 353 139 8 chr3 210780139 210780261 -7256897 + MIR SINE MIR 17 154 -108 616 227 93 6 chr3 210780638 210780810 -7256348 + LTR41 LTR ERVL 1 187 -586 671 257 126 60 chr3 210781095 210781602 -7255556 + LTR41 LTR ERVL 235 795 0 212 244 67 0 chr3 210782863 210782908 -7254250 - MIR3 SINE MIR -146 62 15 693 298 49 7 chr3 210783302 210783587 -7253571 - L1ME3A LINE L1 -286 5867 5571 1367 279 23 19 chr3 210783587 210784160 -7252998 - L1ME3A LINE L1 -1979 4150 3576 316 308 37 9 chr3 210784214 210784321 -7252837 - MER91C DNA MER1_type -30 110 1 313 269 87 13 chr3 210784333 210784482 -7252676 - HAL1 LINE L1 -945 1562 1403 663 249 59 59 chr3 210784559 210785017 -7252141 - L1ME3A LINE L1 -4885 1234 777 2184 104 3 3 chr3 210785637 210785935 -7251223 - AluY SINE Alu -8 303 6 25 0 0 0 chr3 210786561 210786586 -7250572 + AT_rich Low_complexity Low_complexity 1 25 0 357 287 122 33 chr3 210787190 210787371 -7249787 - L1ME4a LINE L1 -224 5897 5701 272 120 0 0 chr3 210788166 210788216 -7248942 + L1MA3 LINE L1 6251 6300 -5 22 35 0 0 chr3 210788216 210788245 -7248913 + AT_rich Low_complexity Low_complexity 1 29 0 2441 108 8 3 chr3 210788484 210788837 -7248321 + THE1A LTR MaLR 1 355 0 11891 88 6 1 chr3 210788837 210790409 -7246749 + THE1A-int LTR MaLR 1 1580 0 2547 94 11 3 chr3 210790409 210790761 -7246397 + THE1A LTR MaLR 1 355 0 333 47 0 0 chr3 210791441 210791484 -7245674 + (TG)n Simple_repeat Simple_repeat 1 43 0 206 354 80 84 chr3 210791518 210791744 -7245414 - L2 LINE L2 -6 3266 3042 303 161 0 0 chr3 210792252 210792308 -7244850 + (TA)n Simple_repeat Simple_repeat 2 57 0 2362 84 0 3 chr3 210793309 210793607 -7243551 + AluSq SINE Alu 1 297 -16 22 0 0 0 chr3 210793725 210793747 -7243411 + AT_rich Low_complexity Low_complexity 1 22 0 2529 129 51 19 chr3 210793822 210794234 -7242924 + MSTC LTR MaLR 4 428 0 266 242 11 11 chr3 210794535 210794626 -7242532 + L1ME4a LINE L1 5812 5902 -219 2108 130 0 3 chr3 210794739 210795031 -7242127 + AluSx SINE Alu 1 291 -21 462 253 60 8 chr3 210795601 210795743 -7241415 - MER5B DNA MER1_type 0 178 30 3471 105 34 4 chr3 210795743 210796102 -7241056 - L1PB1 LINE L1 -2 6149 5768 420 20 0 0 chr3 210796102 210796151 -7241007 + (TG)n Simple_repeat Simple_repeat 1 49 0 3471 105 34 4 chr3 210796151 210796315 -7240843 - L1PB1 LINE L1 -383 5768 5610 1218 245 52 70 chr3 210797063 210797565 -7239593 + MER68 LTR ERV1 1 493 -69 1250 211 49 31 chr3 210797567 210797894 -7239264 - MER7A DNA MER2_type -3 343 13 183 301 75 91 chr3 210798364 210798563 -7238595 - MIR SINE MIR -56 206 11 454 327 39 13 chr3 210798939 210799095 -7238063 + MIR3 SINE MIR 46 205 -3 327 311 16 8 chr3 210799412 210799534 -7237624 - MIR SINE MIR -63 145 23 4371 219 26 48 chr3 210799886 210801215 -7235943 - L1MC4 LINE L1 -30 8012 6476 21 0 0 0 chr3 210802714 210802735 -7234423 + AT_rich Low_complexity Low_complexity 1 21 0 1945 140 0 3 chr3 210802953 210803238 -7233920 - AluSx SINE Alu -28 284 1 519 320 175 8 chr3 210803327 210803721 -7233437 + L2 LINE L2 2837 3296 -17 1374 211 143 23 chr3 210804063 210804498 -7232660 - MER97c DNA MER1_type? -442 648 162 1899 114 10 16 chr3 210804558 210804866 -7232292 - AluSc SINE Alu -3 306 1 190 291 126 83 chr3 210805281 210805511 -7231647 + L2 LINE L2 2813 3052 -261 255 261 39 120 chr3 210806288 210806571 -7230587 + MLT1I LTR MaLR 101 360 -49 21 36 0 0 chr3 210806705 210806733 -7230425 + AT_rich Low_complexity Low_complexity 1 28 0 341 371 72 18 chr3 210806806 210807027 -7230131 + MLT1K LTR MaLR 3 235 -353 2250 131 3 0 chr3 210807147 210807459 -7229699 + AluSq SINE Alu 1 313 0 230 197 14 42 chr3 210807577 210807648 -7229510 + LTR67 LTR ERVL 459 527 -30 417 46 65 37 chr3 210808411 210808519 -7228639 + (TAGA)n Simple_repeat Simple_repeat 4 114 0 243 325 227 7 chr3 210808813 210808967 -7228191 - MIR SINE MIR -72 190 3 224 267 0 70 chr3 210809331 210809417 -7227741 - L2 LINE L2 -523 2791 2712 531 283 125 20 chr3 210809591 210809944 -7227214 - LTR33 LTR ERVL -131 390 1 201 268 0 0 chr3 210810643 210810684 -7226474 + MIR SINE MIR 79 119 -89 495 259 84 24 chr3 210810764 210810930 -7226228 - MIR SINE MIR -82 180 5 340 297 46 42 chr3 210814137 210814400 -7222758 + MLT1L LTR MaLR 323 608 -2 29 60 0 0 chr3 210814765 210814815 -7222343 + AT_rich Low_complexity Low_complexity 1 50 0 2022 154 0 0 chr3 210814894 210815200 -7221958 + AluSx SINE Alu 1 306 -6 357 299 98 0 chr3 210815201 210815375 -7221783 + MIR SINE MIR 23 213 -49 213 39 0 0 chr3 210816858 210816884 -7220274 + (A)n Simple_repeat Simple_repeat 1 26 0 44 80 0 0 chr3 210817539 210817639 -7219519 + AT_rich Low_complexity Low_complexity 1 100 0 696 333 67 30 chr3 210818708 210819319 -7217839 - L2 LINE L2 0 3313 2678 524 240 20 88 chr3 210819444 210819540 -7217618 + Charlie8 DNA MER1_type 58 159 -2258 186 43 0 0 chr3 210819540 210819563 -7217595 + (TTA)n Simple_repeat Simple_repeat 2 24 0 524 240 20 88 chr3 210819563 210819716 -7217442 + Charlie8 DNA MER1_type 159 290 -2127 327 233 78 35 chr3 210820374 210820490 -7216668 + L2 LINE L2 3193 3313 0 1526 97 0 0 chr3 210822324 210822540 -7214618 + L1PA13 LINE L1 5944 6159 -4 229 276 0 0 chr3 210822903 210822961 -7214197 + L1ME3A LINE L1 5618 5675 -495 228 215 0 31 chr3 210822989 210823054 -7214104 + L1MC4 LINE L1 6641 6703 -1339 234 174 0 0 chr3 210823072 210823118 -7214040 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 1043 266 43 25 chr3 210823118 210823570 -7213588 + L1ME3A LINE L1 5665 6142 -22 276 356 30 0 chr3 210824076 210824208 -7212950 + MIR SINE MIR 70 205 -57 187 211 74 105 chr3 210824943 210825038 -7212120 - MIR3 SINE MIR -5 203 112 534 235 117 6 chr3 210825083 210825464 -7211694 - MER69 DNA AcHobo -12 2514 2055 1302 228 52 29 chr3 210825567 210825988 -7211170 - MER69 DNA AcHobo -748 478 48 361 336 32 0 chr3 210826094 210826219 -7210939 - MIR SINE MIR -130 132 4 183 292 0 0 chr3 210826248 210826320 -7210838 + (TATG)n Simple_repeat Simple_repeat 3 74 0 248 311 0 59 chr3 210826722 210826841 -7210317 + MIR SINE MIR 21 132 -76 219 275 125 0 chr3 210827801 210827881 -7209277 - L2 LINE L2 -20 3293 3204 451 147 0 0 chr3 210828107 210828182 -7208976 - AluJb SINE Alu -184 128 54 325 254 196 22 chr3 210828297 210828435 -7208723 + MIR3 SINE MIR 41 202 -6 2767 119 21 2 chr3 210828639 210829059 -7208099 - MSTA LTR MaLR 0 428 1 556 317 207 9 chr3 210829353 210829773 -7207385 - L3 LINE CR1 -8 1569 1067 24 0 0 0 chr3 210829983 210830007 -7207151 + AT_rich Low_complexity Low_complexity 1 24 0 2200 113 0 0 chr3 210830009 210830300 -7206858 - AluSg SINE Alu -19 291 1 215 255 0 0 chr3 210830401 210830452 -7206706 + (TA)n Simple_repeat Simple_repeat 1 51 0 1637 187 14 0 chr3 210830821 210831104 -7206054 - AluJb SINE Alu -25 287 1 297 333 115 13 chr3 210831393 210831549 -7205609 - MER5A DNA MER1_type -5 184 13 2610 288 122 27 chr3 210831578 210833138 -7204020 + L2 LINE L2 1602 3313 0 457 315 33 16 chr3 210834292 210834479 -7202679 - MIR SINE MIR -44 218 30 193 343 67 37 chr3 210834486 210834620 -7202538 + MIR3 SINE MIR 32 169 -39 216 0 0 0 chr3 210834635 210834659 -7202499 + (TA)n Simple_repeat Simple_repeat 2 25 0 2388 76 0 52 chr3 210834661 210834989 -7202169 - AluY SINE Alu 0 311 1 927 224 34 49 chr3 210836407 210836670 -7200488 - MIR SINE MIR -3 259 1 183 306 297 9 chr3 210837500 210837611 -7199547 + L2 LINE L2 3125 3267 -5 28 48 0 0 chr3 210838942 210838984 -7198174 + AT_rich Low_complexity Low_complexity 1 42 0 1848 54 25 8 chr3 210839287 210839529 -7197629 - AluY SINE Alu -12 299 54 3091 149 6 2 chr3 210839529 210840039 -7197119 + L1PA15 LINE L1 5652 6163 -2 30 59 0 0 chr3 210841318 210841369 -7195789 + AT_rich Low_complexity Low_complexity 1 51 0 4512 147 45 61 chr3 210841431 210842037 -7195121 - MER49 LTR ERV1 -1 922 308 2073 137 0 9 chr3 210842037 210842352 -7194806 - AluSx SINE Alu 0 312 1 4512 147 45 61 chr3 210842352 210842573 -7194585 - MER49 LTR ERV1 -615 308 109 2472 60 0 3 chr3 210842573 210842872 -7194286 - AluY SINE Alu -13 298 1 4512 147 45 61 chr3 210842872 210842980 -7194178 - MER49 LTR ERV1 -814 109 1 459 63 0 0 chr3 210843015 210843078 -7194080 + (CA)n Simple_repeat Simple_repeat 2 64 0 35 24 0 0 chr3 210843078 210843120 -7194038 + AT_rich Low_complexity Low_complexity 1 42 0 316 250 14 0 chr3 210843396 210843468 -7193690 - 7SLRNA srpRNA srpRNA -230 90 18 551 317 103 19 chr3 210845641 210845953 -7191205 - MLT1I LTR MaLR -67 342 5 3683 169 16 4 chr3 210845953 210846657 -7190501 + L1MC1 LINE L1 5288 5999 -334 288 0 0 0 chr3 210846903 210846935 -7190223 + (CA)n Simple_repeat Simple_repeat 2 33 0 221 280 0 0 chr3 210847749 210847799 -7189359 + MIR SINE MIR 100 149 -59 242 226 0 32 chr3 210848110 210848172 -7188986 + MIR SINE MIR 203 262 0 * 364 314 53 21 chr3 210848152 210848340 -7188818 - MIR SINE MIR -48 214 21 228 35 0 0 chr3 210848510 210848539 -7188619 + (TA)n Simple_repeat Simple_repeat 1 29 0 22 35 0 0 chr3 210850581 210850610 -7186548 + GC_rich Low_complexity Low_complexity 1 29 0 213 200 210 30 chr3 210851121 210851221 -7185937 + MIR SINE MIR 17 134 -74 652 234 83 7 chr3 210851659 210851804 -7185354 + MIR SINE MIR 13 168 -94 363 281 174 40 chr3 210851925 210852178 -7184980 - L3 LINE CR1 -98 1479 1193 218 304 112 32 chr3 210852830 210852955 -7184203 + MIR SINE MIR 82 216 -46 24 67 0 0 chr3 210853775 210853820 -7183338 + AT_rich Low_complexity Low_complexity 1 45 0 196 155 17 17 chr3 210854572 210854630 -7182528 + CT-rich Low_complexity Low_complexity 3 60 0 5786 231 127 55 chr3 210854653 210855438 -7181720 - L1MC4a LINE L1 -13 7795 7068 183 100 0 0 chr3 210855438 210855468 -7181690 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 5786 231 127 55 chr3 210855468 210856960 -7180198 - L1MC4a LINE L1 -740 7068 5354 2334 37 0 0 chr3 210857630 210857900 -7179258 + AluY SINE Alu 36 305 -6 248 342 87 22 chr3 210858012 210858427 -7178731 + L1MB7 LINE L1 5357 5798 -2010 250 333 70 26 chr3 210859717 210859831 -7177327 - MIR3 SINE MIR -54 154 36 246 239 30 30 chr3 210860142 210860209 -7176949 + HsTC2 DNA Tc2 1349 1415 -483 356 340 154 39 chr3 210860437 210861334 -7175824 + L2 LINE L2 1750 2749 -565 2185 110 3 0 chr3 210861449 210861750 -7175408 - AluSc SINE Alu -7 302 1 321 377 66 12 chr3 210861767 210861934 -7175224 + L2 LINE L2 2919 3094 -178 258 143 0 0 chr3 210862221 210862270 -7174888 + (CA)n Simple_repeat Simple_repeat 2 50 0 948 191 160 71 chr3 210862684 210863009 -7174149 + MLT1A2 LTR MaLR 19 372 -2 2204 110 75 20 chr3 210863369 210863714 -7173444 - THE1B LTR MaLR 0 364 1 11081 100 25 0 chr3 210863714 210865256 -7171902 - THE1B-int LTR MaLR 0 1580 1 1665 142 50 21 chr3 210865256 210865538 -7171620 - THE1B LTR MaLR 0 364 75 482 167 176 0 chr3 210865641 210865749 -7171409 - THE1B LTR MaLR -237 127 1 445 245 15 10 chr3 210865750 210865952 -7171206 - L1MA4A LINE L1 -39 6264 6001 265 319 83 7 chr3 210866095 210866239 -7170919 + MIR SINE MIR 107 261 -1 848 193 12 0 chr3 210866488 210866649 -7170509 + L1MB7 LINE L1 6002 6164 -20 2039 135 10 0 chr3 210866649 210866938 -7170220 - AluSx SINE Alu -20 292 1 278 318 144 36 chr3 210867118 210867313 -7169845 + MIR SINE MIR 30 245 -17 2990 195 8 6 chr3 210867769 210868430 -7168728 - L1 LINE L1 -1187 4959 4298 601 261 75 49 chr3 210869106 210869413 -7167745 - MER46C DNA MER2_type 0 338 24 678 144 0 0 chr3 210869835 210869939 -7167219 - U13 snRNA snRNA 0 104 1 21 36 0 0 chr3 210870123 210870151 -7167007 + AT_rich Low_complexity Low_complexity 1 28 0 1874 163 14 0 chr3 210870219 210870514 -7166644 - AluSx SINE Alu -9 303 5 1105 216 14 0 chr3 210871939 210872147 -7165011 + MER58A DNA MER1_type 13 223 -1 260 349 83 18 chr3 210872547 210872656 -7164502 + L2 LINE L2 3137 3252 -20 230 289 244 0 chr3 210872823 210872913 -7164245 - MIR3 SINE MIR -50 158 47 500 211 108 30 chr3 210873019 210873185 -7163973 + MLT1D LTR MaLR 5 183 -322 2293 77 3 10 chr3 210873198 210873497 -7163661 + AluY SINE Alu 1 297 -14 699 169 48 6 chr3 210873497 210873663 -7163495 - L1ME LINE L1 -711 5453 5281 255 266 16 0 chr3 210873665 210873729 -7163429 + (TG)n Simple_repeat Simple_repeat 2 66 0 955 183 47 0 chr3 210873748 210873939 -7163219 - L1MB5 LINE L1 -210 5964 5765 415 269 168 19 chr3 210873937 210874205 -7162953 - L1 LINE L1 -2365 3781 3474 * 1078 231 98 15 chr3 210874326 210874859 -7162299 - L1 LINE L1 -2821 3325 2749 2014 103 10 10 chr3 210875421 210875711 -7161447 - AluSc SINE Alu -16 293 4 452 241 63 51 chr3 210876014 210876172 -7160986 + MIR SINE MIR 47 206 -56 26 30 0 0 chr3 210876248 210876281 -7160877 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr3 210876353 210876377 -7160781 + AT_rich Low_complexity Low_complexity 1 24 0 2364 63 3 22 chr3 210876396 210876713 -7160445 - AluY SINE Alu 0 311 1 9159 173 13 23 chr3 210876736 210878668 -7158490 - L1 LINE L1 -1151 4995 3084 226 280 65 0 chr3 210879392 210879499 -7157659 - L1ME4a LINE L1 -73 6048 5935 383 324 107 15 chr3 210879512 210879774 -7157384 - L1ME4a LINE L1 -217 5904 5619 413 283 102 23 chr3 210882012 210882189 -7154969 - L2 LINE L2 0 3313 3123 31 26 0 0 chr3 210882408 210882446 -7154712 + GC_rich Low_complexity Low_complexity 1 38 0 2990 195 8 6 chr3 210883140 210883801 -7153357 - L1 LINE L1 -1187 4959 4298 24 0 0 0 chr3 210884483 210884507 -7152651 + AT_rich Low_complexity Low_complexity 1 24 0 14455 157 49 40 chr3 210884540 210885826 -7151332 - L1MA3 LINE L1 -1 7723 6450 2226 104 0 3 chr3 210885826 210886123 -7151035 - AluSq SINE Alu -17 296 1 14455 157 49 40 chr3 210886123 210889849 -7147309 - L1MA3 LINE L1 -1274 6450 2438 1269 132 0 46 chr3 210889849 210890046 -7147112 - AluSx SINE Alu -124 188 1 14455 157 49 40 chr3 210890046 210891751 -7145407 - L1MA3 LINE L1 -5286 2438 750 931 239 49 29 chr3 210892300 210892543 -7144615 - MIR SINE MIR -14 248 1 219 69 0 0 chr3 210893417 210893446 -7143712 + (CA)n Simple_repeat Simple_repeat 2 30 0 1733 140 3 57 chr3 210893668 210893968 -7143190 - AluSx SINE Alu -28 284 1 2599 204 32 2 chr3 210893969 210894524 -7142634 - L1P LINE L1 -1101 5045 4474 938 96 29 0 chr3 210894635 210894771 -7142387 - L1M1 LINE L1 -7414 151 12 295 354 0 0 chr3 210895025 210895121 -7142037 + MIR SINE MIR 2 97 -165 292 337 122 42 chr3 210895880 210896168 -7140990 + L3 LINE CR1 1171 1481 -96 711 319 37 4 chr3 210896371 210896612 -7140546 + MIR SINE MIR 1 249 -13 21 36 0 0 chr3 210896687 210896715 -7140443 + AT_rich Low_complexity Low_complexity 1 28 0 519 263 44 22 chr3 210896877 210897014 -7140144 + L2 LINE L2 3173 3312 -1 1857 151 0 7 chr3 210897065 210897356 -7139802 + AluJo SINE Alu 1 289 -23 319 379 39 7 chr3 210898644 210898797 -7138361 - MIR3 SINE MIR -17 191 34 2107 204 11 42 chr3 210899835 210900306 -7136852 + MLT2B1 LTR ERVL 8 463 -57 287 237 11 0 chr3 210900329 210900422 -7136736 + (TA)n Simple_repeat Simple_repeat 1 94 0 254 156 0 0 chr3 210900447 210900492 -7136666 + MLT2B2 LTR ERVL 1 45 -470 295 246 18 0 chr3 210900510 210900620 -7136538 + (TA)n Simple_repeat Simple_repeat 2 113 0 197 163 76 0 chr3 210900632 210900724 -7136434 + (TA)n Simple_repeat Simple_repeat 2 100 0 839 293 53 76 chr3 210901309 210902908 -7134250 + L1MEc LINE L1 32 1512 -4884 2003 158 0 0 chr3 210902908 210903211 -7133947 + AluSx SINE Alu 1 303 -9 839 293 53 76 chr3 210903211 210903804 -7133354 + L1MEc LINE L1 1512 2117 -4279 * 1018 302 33 19 chr3 210903802 210904210 -7132948 + L1M3d LINE L1 11 692 -5199 559 258 16 66 chr3 210904211 210904393 -7132765 + L1M3d LINE L1 186 358 -5533 2129 245 55 19 chr3 210904817 210905640 -7131518 + L1M3d LINE L1 388 1375 -4516 1804 154 0 45 chr3 210905803 210906114 -7131044 + AluSq SINE Alu 3 299 -14 1172 144 0 103 chr3 210906835 210907127 -7130031 + AluSq SINE Alu 38 299 -14 11329 215 57 32 chr3 210907197 210909923 -7127235 + L1MC1 LINE L1 2078 4917 -1465 180 0 0 0 chr3 210909923 210909943 -7127215 + (CAA)n Simple_repeat Simple_repeat 2 21 0 11329 215 57 32 chr3 210909943 210910680 -7126478 + L1MC1 LINE L1 4917 5634 -748 1095 175 56 8 chr3 210910684 210910918 -7126240 + L1MC1 LINE L1 6183 6427 -142 585 61 0 12 chr3 210910892 210910979 -7126179 + L1PA3 LINE L1 6311 6403 -1 * 805 179 64 6 chr3 210910991 210911147 -7126011 + L1MC1 LINE L1 6394 6558 -11 1795 258 127 17 chr3 210911161 210912239 -7124919 + L1M3d LINE L1 2409 3605 -2365 955 183 47 0 chr3 210912237 210912428 -7124730 + L1MB5 LINE L1 5765 5964 -210 * 255 266 16 0 chr3 210912447 210912511 -7124647 + (CA)n Simple_repeat Simple_repeat 2 66 0 1897 239 44 77 chr3 210912513 210912679 -7124479 + L1ME2 LINE L1 5281 5451 -713 2403 81 0 0 chr3 210912679 210912974 -7124184 - AluY SINE Alu -14 297 3 1897 239 44 77 chr3 210912974 210913702 -7123456 + L1ME2 LINE L1 5451 6145 -19 26 0 0 0 chr3 210913862 210913888 -7123270 + AT_rich Low_complexity Low_complexity 1 26 0 447 111 42 0 chr3 210914052 210914124 -7123034 - AluS SINE Alu -15 295 221 305 234 121 78 chr3 210914387 210914528 -7122630 + L3 LINE CR1 1266 1412 -165 460 245 25 44 chr3 210915049 210915267 -7121891 + MIR SINE MIR 3 262 0 2199 92 0 0 chr3 210915348 210915678 -7121480 - AluSx SINE Alu 0 330 1 533 321 112 18 chr3 210916169 210916393 -7120765 + MIR SINE MIR 18 262 0 1234 133 50 157 chr3 210916725 210917119 -7120039 + MER7A DNA MER2_type 2 337 0 2227 97 3 0 chr3 210917119 210917407 -7119751 + AluSp SINE Alu 1 289 -24 444 279 17 89 chr3 210917429 210917608 -7119550 - MIR SINE MIR -94 168 3 24 0 0 0 chr3 210918105 210918129 -7119029 + AT_rich Low_complexity Low_complexity 1 24 0 968 259 105 21 chr3 210918822 210919045 -7118113 - MLT1C LTR MaLR -14 388 185 871 42 25 0 chr3 210919045 210919164 -7117994 + (TTTC)n Simple_repeat Simple_repeat 1 122 0 2104 101 4 0 chr3 210919165 210919441 -7117717 - AluSq SINE Alu -36 277 1 968 259 105 21 chr3 210919441 210919619 -7117539 - MLT1C LTR MaLR -216 186 6 230 289 244 0 chr3 210919726 210919816 -7117342 + MIR3 SINE MIR 47 158 -50 260 349 83 18 chr3 210919983 210920092 -7117066 - L2 LINE L2 -20 3252 3137 473 275 90 64 chr3 210920544 210920921 -7116237 - MLT1I LTR MaLR -7 402 22 533 239 79 9 chr3 210920939 210921084 -7116074 - MIR SINE MIR -63 145 13 388 339 48 90 chr3 210921108 210921739 -7115419 - L2 LINE L2 -534 2780 2177 22 80 0 0 chr3 210922114 210922164 -7114994 + AT_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr3 210923252 210923275 -7113883 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 210924224 210924245 -7112913 + AT_rich Low_complexity Low_complexity 1 21 0 1348 165 90 85 chr3 210924580 210924946 -7112212 + MLT2D LTR ERVL 1 371 -43 198 0 0 0 chr3 210924946 210924968 -7112190 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1348 165 90 85 chr3 210924968 210925013 -7112145 + MLT2D LTR ERVL 371 414 0 254 336 29 44 chr3 210925470 210925607 -7111551 - MIR3 SINE MIR -11 197 63 199 268 65 106 chr3 210925870 210925993 -7111165 + L2 LINE L2 2697 2814 -500 1155 157 19 32 chr3 210926076 210926292 -7110866 + MLT1F LTR MaLR 322 534 -8 533 205 26 40 chr3 210926300 210926451 -7110707 + L1ME1 LINE L1 5745 5893 -273 409 230 105 63 chr3 210926427 210926675 -7110483 + L1MA10 LINE L1 5926 6333 -1 * 408 88 0 0 chr3 210926800 210926857 -7110301 + (GGA)n Simple_repeat Simple_repeat 1 57 0 280 229 42 76 chr3 210927584 210927702 -7109456 - MIR SINE MIR -73 189 76 3466 66 4 2 chr3 210928068 210928524 -7108634 + L1PA7 LINE L1 5695 6151 -3 931 239 49 29 chr3 210929512 210929755 -7107403 - MIR SINE MIR -14 248 1 219 69 0 0 chr3 210930626 210930655 -7106503 + (CA)n Simple_repeat Simple_repeat 2 30 0 1759 133 3 57 chr3 210930877 210931177 -7105981 - AluSx SINE Alu -28 284 1 307 274 67 52 chr3 210931244 210931379 -7105779 - L2 LINE L2 0 3272 3136 2029 113 32 7 chr3 210931896 210932206 -7104952 - AluSx SINE Alu 0 312 1 329 228 210 0 chr3 210932266 210932428 -7104730 + L1ME LINE L1 5575 5770 -351 771 176 0 15 chr3 210932591 210932722 -7104436 + AluJb SINE Alu 1 129 -183 324 287 23 0 chr3 210932722 210932809 -7104349 - L1MC4 LINE L1 -1340 6702 6614 * 330 265 48 0 chr3 210932737 210932820 -7104338 + L1MC4 LINE L1 6614 6700 -1342 466 299 43 27 chr3 210937613 210937800 -7099358 + MIR SINE MIR 50 239 -23 1465 213 3 18 chr3 210938841 210939127 -7098031 + AluJo SINE Alu 1 282 -30 2494 57 0 16 chr3 210939371 210939687 -7097471 + AluY SINE Alu 1 311 0 24 0 0 0 chr3 210939706 210939730 -7097428 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr3 210939802 210939835 -7097323 + AT_rich Low_complexity Low_complexity 1 33 0 457 267 89 42 chr3 210939911 210940102 -7097056 - MIR SINE MIR -56 206 7 2218 100 0 0 chr3 210940367 210940656 -7096502 + AluSc SINE Alu 6 294 -15 215 333 0 0 chr3 210941070 210941136 -7096022 - MIR SINE MIR -61 147 82 228 294 41 41 chr3 210941281 210941427 -7095731 - MIR SINE MIR -97 165 20 194 358 0 0 chr3 210942931 210942998 -7094160 - L2 LINE L2 0 3313 3247 969 287 92 27 chr3 210944209 210944879 -7092279 + L2 LINE L2 2531 3313 0 1114 214 29 114 chr3 210945716 210945820 -7091338 + LTR37B LTR ERV1 1 112 -356 1160 176 189 48 chr3 210945820 210946195 -7090963 + MSTC LTR MaLR 1 428 0 1114 214 29 114 chr3 210946195 210946600 -7090558 + LTR37B LTR ERV1 112 467 -1 308 290 94 7 chr3 210946600 210946705 -7090453 + Charlie8 DNA MER1_type 171 287 -2130 1124 181 5 0 chr3 210946810 210946998 -7090160 - MER5A DNA MER1_type 0 189 1 1776 170 11 0 chr3 210947121 210947403 -7089755 + AluSx SINE Alu 1 285 -27 753 12 0 0 chr3 210947403 210947489 -7089669 + (TATAA)n Simple_repeat Simple_repeat 4 89 0 457 309 11 48 chr3 210947779 210947967 -7089191 - MIR SINE MIR -46 216 36 246 340 51 90 chr3 210948251 210948507 -7088651 + MIR SINE MIR 11 256 -6 250 200 62 31 chr3 210949958 210950023 -7087135 - MER5A DNA MER1_type -80 109 43 3242 63 5 0 chr3 210950188 210950644 -7086514 + L1PA7 LINE L1 5725 6182 0 394 283 22 122 chr3 210950654 210950884 -7086274 + MIR SINE MIR 31 237 -25 422 259 78 31 chr3 210950993 210951186 -7085972 - L2 LINE L2 0 3313 3112 234 179 89 0 chr3 210951188 210951244 -7085914 + L1MC1 LINE L1 5916 5976 -357 * 3093 177 15 13 chr3 210951243 210951842 -7085316 - L1MA5A LINE L1 -989 5157 4558 6418 123 18 4 chr3 210951843 210952945 -7084213 + L1MA5A LINE L1 5180 6297 0 1734 165 30 38 chr3 210952945 210953029 -7084129 + L1MC1 LINE L1 5961 6044 -289 1758 174 68 0 chr3 210953029 210953351 -7083807 + MER2 DNA MER2_type 1 344 0 1734 165 30 38 chr3 210953351 210953636 -7083522 + L1MC1 LINE L1 6044 6327 -6 285 310 44 9 chr3 210953699 210953812 -7083346 - L2 LINE L2 -216 3097 2981 3499 200 8 15 chr3 210954071 210954827 -7082331 + L1 LINE L1 3671 4421 -1725 4629 65 25 5 chr3 210954828 210955840 -7081318 - MER11A LTR ERVK 0 1266 1 3619 212 38 20 chr3 210955847 210956454 -7080704 + L1PA6 LINE L1 4420 5050 -1096 2174 107 0 13 chr3 210956454 210956753 -7080405 + AluSc SINE Alu 1 295 -14 3619 212 38 20 chr3 210956753 210957031 -7080127 + L1PA6 LINE L1 5050 5321 -825 710 145 0 110 chr3 210958038 210958183 -7078975 - AluJb SINE Alu -130 182 54 30 59 0 0 chr3 210958528 210958579 -7078579 + AT_rich Low_complexity Low_complexity 1 51 0 4428 153 45 60 chr3 210958641 210959246 -7077912 - MER49 LTR ERV1 -1 922 310 2044 140 0 9 chr3 210959246 210959561 -7077597 - AluSx SINE Alu 0 312 1 4428 153 45 60 chr3 210959561 210959782 -7077376 - MER49 LTR ERV1 -613 310 109 2405 70 0 3 chr3 210959782 210960081 -7077077 - AluY SINE Alu -13 298 1 4428 153 45 60 chr3 210960081 210960189 -7076969 - MER49 LTR ERV1 -814 109 1 280 229 42 76 chr3 210962579 210962697 -7074461 - MIR SINE MIR -73 189 76 344 212 5 80 chr3 210963065 210963278 -7073880 + L1PA6 LINE L1 5696 5891 -270 203 77 0 0 chr3 210964010 210964036 -7073122 + (T)n Simple_repeat Simple_repeat 1 26 0 21 36 0 0 chr3 210964326 210964354 -7072804 + AT_rich Low_complexity Low_complexity 1 28 0 2226 112 0 0 chr3 210965259 210965555 -7071603 + AluSx SINE Alu 2 297 -15 34 93 0 0 chr3 210965628 210965725 -7071433 + AT_rich Low_complexity Low_complexity 1 97 0 258 290 32 0 chr3 210965838 210965871 -7071287 + (TATG)n Simple_repeat Simple_repeat 3 33 -65 1410 167 116 13 chr3 210965871 210966182 -7070976 + MER2 DNA MER2_type 2 344 0 258 290 32 0 chr3 210966182 210966241 -7070917 + (TATG)n Simple_repeat Simple_repeat 33 98 0 210 138 52 17 chr3 210966242 210966300 -7070858 + GA-rich Low_complexity Low_complexity 4 63 0 1444 229 107 10 chr3 210966935 210967072 -7070086 + MLT1C LTR MaLR 11 133 -334 2140 122 0 0 chr3 210967072 210967394 -7069764 + AluSx SINE Alu 1 322 0 1444 229 107 10 chr3 210967394 210967664 -7069494 + MLT1C LTR MaLR 133 460 -7 183 277 106 0 chr3 210967843 210967890 -7069268 - L3 LINE CR1 0 1577 1526 619 218 162 28 chr3 210968244 210968423 -7068735 - MER3 DNA MER1_type 0 209 7 341 204 61 51 chr3 210969455 210969553 -7067605 + MIR SINE MIR 45 143 -119 188 194 0 0 chr3 210969634 210969665 -7067493 - MIR3 SINE MIR -10 198 168 231 170 0 0 chr3 210970084 210970131 -7067027 + (TG)n Simple_repeat Simple_repeat 2 48 0 261 269 64 0 chr3 210970648 210970726 -7066432 - MIR SINE MIR -50 212 130 2720 199 3 2 chr3 210970963 210971587 -7065571 + L1MA9 LINE L1 5162 5787 -525 914 163 98 0 chr3 210971587 210971771 -7065387 - MER2 DNA MER2_type 0 345 144 1443 220 76 42 chr3 210971859 210972332 -7064826 + L1MA9 LINE L1 5786 6274 -38 24 32 0 0 chr3 210972332 210972363 -7064795 + AT_rich Low_complexity Low_complexity 1 31 0 5470 117 7 7 chr3 210972495 210973327 -7063831 + L1PA16 LINE L1 5326 6157 -9 23 0 0 0 chr3 210973327 210973350 -7063808 + AT_rich Low_complexity Low_complexity 1 23 0 525 298 85 38 chr3 210973358 210973593 -7063565 - MIR SINE MIR -2 260 15 187 265 214 17 chr3 210974273 210974390 -7062768 + MIR SINE MIR 117 256 -6 23 0 0 0 chr3 210974631 210974654 -7062504 + AT_rich Low_complexity Low_complexity 1 23 0 324 231 138 46 chr3 210974664 210974794 -7062364 - MIR SINE MIR 0 262 121 2928 106 11 5 chr3 210974801 210975244 -7061914 + L1MA3 LINE L1 5860 6305 0 284 333 9 18 chr3 210976931 210977042 -7060116 - L3 LINE CR1 -1 1576 1467 1306 269 158 18 chr3 210977252 210977932 -7059226 + L2 LINE L2 2541 3312 -1 277 246 14 14 chr3 210978220 210978289 -7058869 - L2 LINE L2 -1 3312 3244 183 390 12 0 chr3 210978347 210978429 -7058729 - MER5B DNA MER1_type 0 178 96 195 42 0 0 chr3 210979887 210979911 -7057247 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chr3 210980390 210980418 -7056740 + AT_rich Low_complexity Low_complexity 1 28 0 444 323 101 14 chr3 210982371 210982647 -7054511 + L1ME4a LINE L1 5605 5904 -217 226 280 65 0 chr3 210982660 210982767 -7054391 + L1ME4a LINE L1 5935 6048 -73 284 357 30 40 chr3 210983677 210983876 -7053282 + L3 LINE CR1 1175 1371 -206 387 296 176 7 chr3 210984385 210984527 -7052631 - MER5A DNA MER1_type -7 182 17 287 339 164 0 chr3 210984812 210984977 -7052181 + L3 LINE CR1 1385 1576 -1 21 0 0 0 chr3 210985036 210985057 -7052101 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr3 210985250 210985275 -7051883 + (GGAA)n Simple_repeat Simple_repeat 3 27 0 231 294 33 22 chr3 210985385 210985477 -7051681 - MIR3 SINE MIR -38 170 78 1114 236 66 54 chr3 210985573 210985651 -7051507 + MER58B DNA MER1_type 2 78 -2342 1422 173 71 8 chr3 210985651 210985955 -7051203 - AluJo SINE Alu 0 321 1 2777 13 0 0 chr3 210985961 210986264 -7050894 - AluYa5 SINE Alu -8 303 1 2391 86 0 3 chr3 210986264 210986565 -7050593 - AluSp SINE Alu -13 300 1 1114 236 66 54 chr3 210986565 210986811 -7050347 + MER58B DNA MER1_type 81 340 -1 241 281 135 43 chr3 210987051 210987236 -7049922 - MIR SINE MIR -43 219 18 238 336 100 9 chr3 210988145 210988255 -7048903 - MIR3 SINE MIR 0 208 89 21 57 0 0 chr3 210988589 210988624 -7048534 + AT_rich Low_complexity Low_complexity 1 35 0 214 359 0 0 chr3 210989453 210989531 -7047627 - MIR SINE MIR 0 262 185 381 386 19 9 chr3 210989739 210989949 -7047209 - L2 LINE L2 -192 3080 2869 577 372 89 12 chr3 210989976 210990538 -7046620 - L2 LINE L2 -509 2805 2201 558 278 97 118 chr3 210990542 210991035 -7046123 - L2 LINE L2 -5 3308 2826 216 0 0 0 chr3 210991073 210991097 -7046061 + (CAAT)n Simple_repeat Simple_repeat 3 26 0 2006 196 19 5 chr3 210991333 210991756 -7045402 + L1MB7 LINE L1 5754 6182 -2 231 167 0 0 chr3 210992554 210992596 -7044562 + (CA)n Simple_repeat Simple_repeat 2 43 0 348 322 140 14 chr3 210993709 210993923 -7043235 + MIR SINE MIR 2 242 -20 207 0 0 0 chr3 210994011 210994034 -7043124 + (A)n Simple_repeat Simple_repeat 1 23 0 284 331 99 0 chr3 210994876 210994997 -7042161 + MIR SINE MIR 57 189 -73 195 114 0 0 chr3 210995100 210995135 -7042023 + (CA)n Simple_repeat Simple_repeat 1 35 0 203 308 48 39 chr3 210995376 210995480 -7041678 - L2 LINE L2 0 3272 3168 241 273 0 0 chr3 210996753 210996808 -7040350 + GA-rich Low_complexity Low_complexity 2 56 0 1299 268 80 15 chr3 210997289 210997806 -7039352 - L1MC4a LINE L1 -720 5431 5341 1565 181 30 10 chr3 210998926 210999229 -7037929 - AluJo SINE Alu -3 309 1 260 257 95 0 chr3 210999430 210999504 -7037654 - MIR SINE MIR -107 155 75 26 30 0 0 chr3 210999541 210999574 -7037584 + AT_rich Low_complexity Low_complexity 1 33 0 29 47 0 0 chr3 210999624 210999667 -7037491 + AT_rich Low_complexity Low_complexity 1 43 0 354 286 133 51 chr3 210999667 210999901 -7037257 - L1ME LINE L1 -375 5746 5494 3039 200 77 14 chr3 210999985 211000163 -7036995 - L1MD2 LINE L1 -10 6349 6184 309 51 0 0 chr3 211000163 211000202 -7036956 + (TG)n Simple_repeat Simple_repeat 2 40 0 3039 200 77 14 chr3 211000202 211000758 -7036400 - L1MD2 LINE L1 -175 6184 5539 372 22 0 0 chr3 211000765 211000810 -7036348 + (CA)n Simple_repeat Simple_repeat 2 46 0 183 204 0 0 chr3 211000810 211000854 -7036304 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 363 171 0 0 chr3 211000998 211001074 -7036084 + (TA)n Simple_repeat Simple_repeat 1 76 0 287 122 0 0 chr3 211001087 211001128 -7036030 + MADE1 DNA Mariner 3 43 -37 357 62 21 0 chr3 211001162 211001210 -7035948 + MLT2C2 LTR ERVL 416 464 0 297 274 0 0 chr3 211001282 211001344 -7035814 + MIR SINE MIR 67 128 -80 341 271 38 53 chr3 211002102 211002235 -7034923 - MER5A DNA MER1_type -22 167 37 2837 122 9 2 chr3 211002254 211002679 -7034479 + MSTA LTR MaLR 1 428 0 238 357 120 0 chr3 211002719 211002851 -7034307 - MIR SINE MIR -57 151 4 2501 46 0 20 chr3 211002874 211003178 -7033980 - AluY SINE Alu -13 298 1 21 0 0 0 chr3 211004714 211004735 -7032423 + AT_rich Low_complexity Low_complexity 1 21 0 305 238 0 0 chr3 211004926 211004989 -7032169 + L1MC4 LINE L1 6641 6703 -1339 304 294 0 33 chr3 211004961 211005053 -7032105 - L1MC4 LINE L1 -1339 6703 6615 * 291 346 0 40 chr3 211005215 211005401 -7031757 - MIR SINE MIR -57 205 30 231 125 0 0 chr3 211005428 211005468 -7031690 + (TTA)n Simple_repeat Simple_repeat 2 41 0 1425 180 20 30 chr3 211006815 211007110 -7030048 - AluSx SINE Alu -3 309 18 274 338 69 82 chr3 211007382 211007977 -7029181 + L2 LINE L2 2684 3268 -4 31 0 0 0 chr3 211008023 211008054 -7029104 + AT_rich Low_complexity Low_complexity 1 31 0 335 266 89 24 chr3 211008543 211008667 -7028491 + MIR3 SINE MIR 73 204 -4 24 53 0 0 chr3 211008785 211008823 -7028335 + AT_rich Low_complexity Low_complexity 1 38 0 245 317 127 7 chr3 211009012 211009154 -7028004 - MIR SINE MIR -50 212 54 346 331 67 100 chr3 211009271 211009642 -7027516 - L2 LINE L2 0 3272 2914 922 237 0 5 chr3 211009834 211010020 -7027138 + MER5A DNA MER1_type 5 189 0 185 291 118 45 chr3 211010473 211010583 -7026575 - L2 LINE L2 -4 3268 3151 2177 95 0 36 chr3 211010987 211011292 -7025866 - AluSx SINE Alu -18 294 1 385 272 156 68 chr3 211012424 211012891 -7024267 + MLT1J LTR MaLR 1 508 -3 198 0 0 0 chr3 211013307 211013329 -7023829 + (A)n Simple_repeat Simple_repeat 1 22 0 198 279 16 16 chr3 211013341 211013402 -7023756 + L2 LINE L2 3209 3269 -3 598 94 0 75 chr3 211013526 211013632 -7023526 + MER20 DNA MER1_type 68 165 -54 181 363 9 9 chr3 211013863 211013976 -7023182 - MIR SINE MIR -1 261 149 182 354 62 0 chr3 211015910 211016006 -7021152 - L2 LINE L2 -39 3233 3132 2404 27 3 0 chr3 211016679 211016975 -7020183 - L1P2 LINE L1 -531 5624 5328 4460 27 0 0 chr3 211017002 211017525 -7019633 + L1PA4 LINE L1 5632 6154 -1 31 26 0 0 chr3 211017984 211018022 -7019136 + AT_rich Low_complexity Low_complexity 1 38 0 2074 113 3 14 chr3 211018242 211018535 -7018623 + AluSx SINE Alu 1 290 -22 240 328 0 0 chr3 211018864 211018931 -7018227 + MIR SINE MIR 37 103 -159 218 184 0 41 chr3 211019103 211019152 -7018006 + A-rich Low_complexity Low_complexity 2 48 0 23 33 0 0 chr3 211019809 211019839 -7017319 + AT_rich Low_complexity Low_complexity 1 30 0 188 350 62 12 chr3 211019912 211019992 -7017166 + MIR SINE MIR 40 123 -85 302 274 29 29 chr3 211020318 211020420 -7016738 + MIR SINE MIR 149 250 -12 253 282 129 37 chr3 211020874 211021037 -7016121 - MIR SINE MIR -23 239 62 2004 100 3 57 chr3 211021469 211021768 -7015390 + AluSx SINE Alu 1 283 -29 2793 73 11 48 chr3 211022364 211022801 -7014357 + L1PA8 LINE L1 5749 6169 -3 270 319 75 0 chr3 211023616 211023710 -7013448 - MIR3 SINE MIR -19 189 89 539 53 13 0 chr3 211023891 211023966 -7013192 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 373 351 128 28 chr3 211024076 211024327 -7012831 - L2 LINE L2 0 3272 2997 1749 124 0 26 chr3 211024328 211024593 -7012565 + AluSx SINE Alu 1 258 -54 213 331 43 49 chr3 211024694 211024973 -7012185 - L2 LINE L2 -271 3001 2711 422 272 24 24 chr3 211025005 211025174 -7011984 + L1ME LINE L1 5630 5798 -323 380 308 128 13 chr3 211026049 211026276 -7010882 + L1MEd LINE L1 819 1071 -5048 1991 130 0 59 chr3 211026360 211026682 -7010476 + AluSc SINE Alu 7 309 0 596 253 44 6 chr3 211026685 211026843 -7010315 + Charlie1 DNA MER1_type 15 178 -2583 * 2575 200 48 5 chr3 211026837 211027498 -7009660 + Charlie1 DNA MER1_type 2055 2744 -17 200 260 137 41 chr3 211028593 211028666 -7008492 + MIR SINE MIR 70 149 -113 369 43 0 0 chr3 211028825 211028872 -7008286 + (CA)n Simple_repeat Simple_repeat 2 48 0 471 335 24 4 chr3 211029007 211029164 -7007994 - MIR3 SINE MIR -42 166 2 202 348 22 34 chr3 211029903 211029992 -7007166 - L2 LINE L2 -9 3304 3217 4071 100 9 3 chr3 211030439 211031017 -7006141 - L1PA10 LINE L1 -11 6157 5577 200 191 24 0 chr3 211031173 211031215 -7005943 - MIR SINE MIR -67 195 153 25 31 0 0 chr3 211031637 211031669 -7005489 + AT_rich Low_complexity Low_complexity 1 32 0 302 292 42 0 chr3 211032468 211032564 -7004594 + MER94 DNA DNA 1 100 -34 317 182 17 0 chr3 211032653 211032723 -7004435 - MIR SINE MIR -67 141 82 320 269 103 69 chr3 211033359 211033534 -7003624 - MIR3 SINE MIR -7 201 21 2048 199 59 14 chr3 211033593 211034035 -7003123 + MLT1C LTR MaLR 3 464 -3 845 254 25 25 chr3 211035171 211035407 -7001751 - MIR SINE MIR -19 243 8 614 235 100 12 chr3 211035929 211036099 -7001059 - MER5A DNA MER1_type 0 189 5 1735 166 0 28 chr3 211036364 211036654 -7000504 + AluJb SINE Alu 1 282 -30 190 361 42 17 chr3 211037682 211037801 -6999357 + MIR3 SINE MIR 63 184 -24 239 278 165 10 chr3 211037829 211037926 -6999232 - L2 LINE L2 0 3313 3202 180 289 115 29 chr3 211038980 211039084 -6998074 - MIR3 SINE MIR -3 205 93 544 247 55 20 chr3 211039442 211039588 -6997570 + MIR3 SINE MIR 47 197 -11 1048 278 72 73 chr3 211039657 211040352 -6996806 + MER21B LTR ERV1 21 714 -149 241 357 19 39 chr3 211041102 211041256 -6995902 - MER5A DNA MER1_type -28 161 11 741 215 59 55 chr3 211041945 211042107 -6995051 + MIR SINE MIR 36 201 -61 2323 76 3 3 chr3 211042107 211042398 -6994760 - AluY SINE Alu -20 291 1 741 215 59 55 chr3 211042398 211042454 -6994704 + MIR SINE MIR 201 255 -7 247 284 71 47 chr3 211042817 211042986 -6994172 - MIR SINE MIR -27 235 63 351 103 0 0 chr3 211043784 211043842 -6993316 + L1PA8 LINE L1 6107 6164 -8 2429 80 0 3 chr3 211043864 211044176 -6992982 - AluY SINE Alu 0 311 1 338 289 224 59 chr3 211044600 211045226 -6991932 + L1M2 LINE L1 1453 2181 -5385 422 266 23 34 chr3 211045419 211045596 -6991562 + L1M2 LINE L1 2305 2479 -5010 331 176 0 0 chr3 211045597 211045648 -6991510 + 5S rRNA rRNA 1 51 -70 11029 218 45 39 chr3 211045651 211045716 -6991442 + L1MA9 LINE L1 2260 2323 -5408 4042 142 27 6 chr3 211045716 211046419 -6990739 + L1MA4A LINE L1 5572 6289 -14 11029 218 45 39 chr3 211046419 211049471 -6987687 + L1MA9 LINE L1 2323 5295 -2436 1668 184 3 23 chr3 211049471 211049775 -6987383 + AluJb SINE Alu 1 298 -14 11029 218 45 39 chr3 211049775 211052189 -6984969 + L1MA9 LINE L1 5295 7693 -38 1849 167 0 3 chr3 211052863 211053145 -6984013 + AluSx SINE Alu 1 281 -31 291 365 12 18 chr3 211053595 211053787 -6983371 + MIR SINE MIR 8 195 -67 238 164 224 0 chr3 211053807 211053874 -6983284 - MER5A DNA MER1_type -83 106 25 1158 277 69 47 chr3 211054759 211055225 -6981933 + L2 LINE L2 2838 3313 0 216 368 118 7 chr3 211055366 211055518 -6981640 + MIR3 SINE MIR 30 198 -10 230 275 40 74 chr3 211055565 211055714 -6981444 - L2 LINE L2 -15 3298 3155 311 357 54 32 chr3 211057079 211057264 -6979894 - L3b LINE CR1 -268 1315 1127 4367 154 87 11 chr3 211057679 211058518 -6978640 + MER4D LTR ERV1 1 903 0 1352 165 77 33 chr3 211058817 211059180 -6977978 - L1MA9 LINE L1 -42 6270 5892 7140 54 6 4 chr3 211059280 211060480 -6976678 + L1PA8 LINE L1 4969 6166 -6 325 292 133 0 chr3 211060721 211060841 -6976317 - MIR3 SINE MIR -1 207 72 201 321 48 12 chr3 211060927 211061011 -6976147 + MIR3 SINE MIR 104 190 -18 208 308 0 0 chr3 211061623 211061675 -6975483 + (TG)n Simple_repeat Simple_repeat 1 52 0 313 257 152 66 chr3 211061827 211062084 -6975074 + LTR16C LTR ERVL 158 436 -55 2188 103 33 0 chr3 211062791 211063091 -6974067 - AluSg SINE Alu 0 310 1 25 0 0 0 chr3 211064052 211064077 -6973081 + AT_rich Low_complexity Low_complexity 1 25 0 248 259 69 26 chr3 211067279 211067395 -6969763 + L2 LINE L2 2383 2503 -811 2624 197 69 41 chr3 211067532 211067618 -6969540 + Charlie1a DNA MER1_type 1 83 -2678 857 141 0 8 chr3 211067618 211067746 -6969412 - FLAM_C SINE Alu -6 127 1 2624 197 69 41 chr3 211067746 211068395 -6968763 + Charlie1a DNA MER1_type 83 757 -698 693 184 35 7 chr3 211068805 211068946 -6968212 + MLT1A1 LTR MaLR 1 145 -220 18753 132 10 27 chr3 211069046 211072358 -6964800 + L1P LINE L1 694 3947 -2199 2296 94 7 3 chr3 211072358 211072666 -6964492 + AluSc SINE Alu 1 309 0 18753 132 10 27 chr3 211072666 211072795 -6964363 + L1P LINE L1 3947 4077 -2069 532 217 23 1 chr3 211072897 211073044 -6964114 + L1MC4 LINE L1 6857 7075 -803 1351 268 111 10 chr3 211073047 211073622 -6963536 + L1MC4 LINE L1 7247 7879 -163 1895 155 18 64 chr3 211073633 211074026 -6963132 + THE1C LTR MaLR 1 375 0 307 356 65 33 chr3 211074137 211074474 -6962684 + HAL1b LINE L1 6 353 -995 3815 211 23 17 chr3 211074504 211075435 -6961723 + Cheshire DNA MER1_type 895 1830 -590 1211 178 5 9 chr3 211076021 211076240 -6960918 + MER20 DNA MER1_type 1 218 -1 255 79 0 0 chr3 211076423 211076461 -6960697 + (T)n Simple_repeat Simple_repeat 1 38 0 979 179 0 42 chr3 211077096 211077359 -6959799 + pTR5 LTR ERV1 743 994 -1444 1667 172 10 38 chr3 211077622 211077936 -6959222 + AluJb SINE Alu 1 305 -7 9752 135 46 141 chr3 211078275 211078950 -6958208 - Tigger1 DNA MER2_type 0 2418 1680 878 201 0 19 chr3 211078950 211079104 -6958054 - AluJo SINE Alu -149 163 13 9752 135 46 141 chr3 211079104 211080923 -6956235 - Tigger1 DNA MER2_type -738 1680 23 218 333 46 35 chr3 211081429 211081603 -6955555 - MIR3 SINE MIR -25 183 8 243 263 54 25 chr3 211081726 211081855 -6955303 - MIR SINE MIR -50 212 78 2327 110 0 0 chr3 211082577 211082877 -6954281 + AluSc SINE Alu 1 300 -9 1405 176 94 22 chr3 211083844 211084163 -6952995 - MER2 DNA MER2_type -2 342 1 19263 41 51 3 chr3 211084375 211086938 -6950220 + L1P LINE L1 3 2687 -3459 208 214 119 12 chr3 211087357 211087441 -6949717 - MIR3 SINE MIR -17 191 99 488 282 98 12 chr3 211088036 211088199 -6948959 - MIR3 SINE MIR -31 177 1 992 255 16 16 chr3 211088806 211089128 -6948030 - MER46C DNA MER2_type -14 324 3 947 189 0 0 chr3 211089314 211089467 -6947691 + AluJb SINE Alu 129 281 -31 2145 66 3 3 chr3 211089467 211089753 -6947405 + L1PA8 LINE L1 5887 6172 0 1225 234 18 47 chr3 211089897 211090099 -6947059 + MLT1A2 LTR MaLR 2 189 -185 189 0 0 0 chr3 211090099 211090120 -6947038 + (TCTCCC)n Simple_repeat Simple_repeat 5 25 0 1225 234 18 47 chr3 211090120 211090301 -6946857 + MLT1A2 LTR MaLR 189 374 0 537 298 18 18 chr3 211090387 211090558 -6946600 + MIR3 SINE MIR 24 194 -14 299 315 22 87 chr3 211091430 211091614 -6945544 + MER5B DNA MER1_type 1 172 -6 207 0 0 0 chr3 211092133 211092156 -6945002 + (CA)n Simple_repeat Simple_repeat 2 24 0 227 323 15 0 chr3 211092429 211092494 -6944664 + L2 LINE L2 3248 3313 0 181 352 152 16 chr3 211092473 211092598 -6944560 + MIR3 SINE MIR 5 146 -62 * 5631 103 24 12 chr3 211092600 211093520 -6943638 + L1MA2 LINE L1 5374 6304 0 1537 143 4 4 chr3 211093722 211093953 -6943205 - AluJb SINE Alu -81 231 1 597 290 5 65 chr3 211094153 211094370 -6942788 - MIR SINE MIR -10 252 49 3805 143 29 9 chr3 211094666 211095317 -6941841 + L1P3 LINE L1 10 673 -5788 22 80 0 0 chr3 211095494 211095544 -6941614 + AT_rich Low_complexity Low_complexity 1 50 0 1631 96 76 4 chr3 211095938 211096187 -6940971 - L1PA7 LINE L1 -4 6150 5884 209 0 97 0 chr3 211096793 211096824 -6940334 + T-rich Low_complexity Low_complexity 2 35 0 2432 72 0 3 chr3 211098108 211098412 -6938746 + AluSq SINE Alu 1 303 -10 22 0 0 0 chr3 211098535 211098557 -6938601 + AT_rich Low_complexity Low_complexity 1 22 0 373 295 161 40 chr3 211099256 211099480 -6937678 - MIR SINE MIR -10 252 2 274 321 67 37 chr3 211100540 211100674 -6936484 + MIR3 SINE MIR 9 146 -62 1566 59 5 5 chr3 211102096 211102317 -6934841 - pTR5 LTR ERV1 -2046 392 172 304 245 10 0 chr3 211102320 211102418 -6934740 - LTR30 LTR ERV1 -80 642 544 1069 153 127 41 chr3 211102418 211102686 -6934472 - pTR5 LTR ERV1 -413 2025 1735 2428 67 0 10 chr3 211103038 211103338 -6933820 + AluY SINE Alu 1 297 -14 356 282 115 32 chr3 211103663 211103819 -6933339 - MIR3 SINE MIR -24 184 16 221 343 0 0 chr3 211103836 211103906 -6933252 + MER5A DNA MER1_type 46 115 -74 22 0 0 0 chr3 211104668 211104690 -6932468 + AT_rich Low_complexity Low_complexity 1 22 0 496 336 26 26 chr3 211105217 211105449 -6931709 + MIR SINE MIR 20 251 -11 262 148 0 33 chr3 211105855 211105916 -6931242 + (GGAA)n Simple_repeat Simple_repeat 4 62 0 189 271 34 0 chr3 211107720 211107779 -6929379 - MIR SINE MIR -62 146 86 278 340 115 0 chr3 211108384 211108540 -6928618 + MIR3 SINE MIR 30 203 -5 1399 173 4 17 chr3 211109234 211109471 -6927687 - AluJo SINE Alu -24 288 55 229 250 125 0 chr3 211109713 211109785 -6927373 - MIR SINE MIR -151 111 31 411 347 20 20 chr3 211111175 211111325 -6925833 - MIR3 SINE MIR -25 183 34 1302 171 20 4 chr3 211111889 211112135 -6925023 + MLT1A1 LTR MaLR 116 365 0 931 231 110 33 chr3 211112413 211112750 -6924408 + LTR16A LTR ERVL 88 450 0 324 0 0 0 chr3 211114762 211114798 -6922360 + (CA)n Simple_repeat Simple_repeat 2 37 0 240 333 34 34 chr3 211115274 211115391 -6921767 - MIR3 SINE MIR -25 183 67 376 322 8 17 chr3 211115949 211116067 -6921091 + MIR SINE MIR 24 140 -122 412 373 8 0 chr3 211116375 211116501 -6920657 - MER91A DNA MER1_type -50 146 20 1089 235 0 5 chr3 211116618 211116831 -6920327 + MER8 DNA MER2_type 28 239 0 345 361 53 8 chr3 211118049 211118182 -6918976 - L2 LINE L2 0 3272 3134 689 291 64 62 chr3 211118188 211118594 -6918564 - MLT1I LTR MaLR -2 407 1 374 356 132 14 chr3 211118664 211118945 -6918213 + L3 LINE CR1 1155 1468 -109 356 300 99 70 chr3 211119331 211119441 -6917717 - MIR SINE MIR -7 255 150 2232 100 0 3 chr3 211119441 211119730 -6917428 - AluSc SINE Alu -21 288 1 356 300 99 70 chr3 211119730 211119848 -6917310 - MIR SINE MIR -112 150 17 3922 26 7 0 chr3 211121918 211122381 -6914777 + L1PA4 LINE L1 5686 6151 -4 21 0 0 0 chr3 211122742 211122763 -6914395 + AT_rich Low_complexity Low_complexity 1 21 0 183 42 0 0 chr3 211123054 211123078 -6914080 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 294 297 109 55 chr3 211123160 211123325 -6913833 - MIR3 SINE MIR -5 203 30 2520 55 3 6 chr3 211123655 211123967 -6913191 - AluSq SINE Alu -2 311 1 27 73 0 0 chr3 211125220 211125275 -6911883 + AT_rich Low_complexity Low_complexity 1 55 0 846 154 0 28 chr3 211125317 211125460 -6911698 + FLAM_C SINE Alu 1 139 -4 404 188 82 0 chr3 211125652 211125737 -6911421 - Tigger5 DNA MER2_type 0 2323 2232 238 245 38 0 chr3 211125742 211125795 -6911363 - Tigger5 DNA MER2_type -2268 55 1 2582 93 6 3 chr3 211129451 211129805 -6907353 + THE1A LTR MaLR 1 355 0 10941 102 42 0 chr3 211129805 211131322 -6905836 + THE1A-int LTR MaLR 1 1580 0 2687 96 3 0 chr3 211131322 211131676 -6905482 + THE1A LTR MaLR 1 355 0 1100 121 61 12 chr3 211131688 211131853 -6905305 + AluSg/x SINE Alu 118 290 -20 681 114 0 0 chr3 211131856 211131961 -6905197 + (TA)n Simple_repeat Simple_repeat 1 105 0 967 213 88 124 chr3 211131963 211132430 -6904728 + L1ME LINE L1 4387 4817 -1329 192 97 0 0 chr3 211132430 211132461 -6904697 + (TG)n Simple_repeat Simple_repeat 1 31 0 967 213 88 124 chr3 211132461 211132757 -6904401 + L1ME LINE L1 4817 5122 -1024 926 78 0 0 chr3 211132787 211132902 -6904256 - AluY SINE Alu -14 297 183 280 29 0 0 chr3 211132902 211132937 -6904221 + THE1-int LTR MaLR 1379 1413 -167 1390 106 6 0 chr3 211132955 211133135 -6904023 - AluY SINE Alu -130 181 1 1079 235 54 76 chr3 211133150 211133413 -6903745 + L1ME LINE L1 5156 5423 -739 2028 107 0 73 chr3 211133413 211133730 -6903428 + AluSc SINE Alu 1 294 -15 1079 235 54 76 chr3 211133730 211134068 -6903090 + L1ME LINE L1 5423 5750 -412 301 287 19 19 chr3 211134070 211134178 -6902980 + L1M4 LINE L1 4993 5100 -1046 236 114 0 0 chr3 211134181 211134225 -6902933 - L1PA8 LINE L1 -1 6171 6128 255 102 41 0 chr3 211134317 211134366 -6902792 + L1M4 LINE L1 5188 5238 -908 791 274 61 7 chr3 211134374 211134685 -6902473 + L1ME3 LINE L1 5625 5953 -217 306 212 45 73 chr3 211134774 211134927 -6902231 + L1ME3 LINE L1 5988 6134 -28 180 268 211 14 chr3 211136155 211136226 -6900932 + L2 LINE L2 3168 3252 -20 1904 141 10 3 chr3 211136465 211136756 -6900402 - AluJb SINE Alu -19 293 1 247 263 9 26 chr3 211137179 211137293 -6899865 + L1P LINE L1 4906 5017 -1129 22 0 0 0 chr3 211137395 211137417 -6899741 + AT_rich Low_complexity Low_complexity 1 22 0 730 238 44 112 chr3 211139461 211139639 -6897519 + L1MC4a LINE L1 6443 6632 -1176 333 0 0 0 chr3 211139639 211139676 -6897482 + (TG)n Simple_repeat Simple_repeat 1 37 0 730 238 44 112 chr3 211139676 211139908 -6897250 + L1MC4a LINE L1 6632 6825 -983 190 375 78 16 chr3 211140731 211140859 -6896299 + L2 LINE L2 3136 3271 -1 4302 276 73 46 chr3 211141172 211142094 -6895064 + HAL1 LINE L1 3 899 -1608 5566 68 18 9 chr3 211142094 211142831 -6894327 + SVA Other Other 643 1385 -1 4302 276 73 46 chr3 211142831 211144302 -6892856 + HAL1 LINE L1 899 2459 -48 654 284 47 13 chr3 211144915 211145151 -6892007 - MIR SINE MIR 0 262 19 2718 23 0 0 chr3 211145382 211145686 -6891472 - AluYa5 SINE Alu -7 304 1 200 283 33 33 chr3 211146199 211146259 -6890899 + L2 LINE L2 3235 3294 -19 201 353 118 0 chr3 211146308 211146410 -6890748 + L2 LINE L2 2924 3037 -235 588 206 53 38 chr3 211146966 211147097 -6890061 + MER5A DNA MER1_type 7 139 -50 990 167 162 0 chr3 211148094 211148292 -6888866 + MIR SINE MIR 12 241 -21 222 37 0 0 chr3 211149026 211149053 -6888105 + (T)n Simple_repeat Simple_repeat 1 27 0 313 316 115 23 chr3 211149337 211149511 -6887647 - MIR3 SINE MIR -17 191 2 222 91 0 0 chr3 211150654 211150687 -6886471 + (A)n Simple_repeat Simple_repeat 1 33 0 195 373 68 17 chr3 211151993 211152111 -6885047 - L2 LINE L2 -39 3233 3110 206 320 155 0 chr3 211152997 211153100 -6884058 - MIR SINE MIR -58 150 32 273 293 75 28 chr3 211153697 211153803 -6883355 + L2 LINE L2 3157 3267 -5 613 228 161 0 chr3 211154314 211154463 -6882695 - MER5A DNA MER1_type 0 189 17 537 269 23 29 chr3 211154482 211154653 -6882505 + MER5B DNA MER1_type 1 170 -8 862 139 11 21 chr3 211154730 211155010 -6882148 + GA-rich Low_complexity Low_complexity 1 276 0 256 333 207 0 chr3 211155036 211155147 -6882011 - MER5A DNA MER1_type -3 186 53 358 272 77 30 chr3 211155185 211155354 -6881804 - MER5B DNA MER1_type 0 178 2 180 0 0 0 chr3 211158330 211158350 -6878808 + (T)n Simple_repeat Simple_repeat 1 20 0 230 204 37 0 chr3 211158484 211158538 -6878620 + C-rich Low_complexity Low_complexity 5 60 0 246 306 92 20 chr3 211160045 211160143 -6877015 - MIR SINE MIR -67 141 37 956 140 6 0 chr3 211160422 211160579 -6876579 - U1 snRNA snRNA 0 165 8 212 216 49 78 chr3 211161024 211161126 -6876032 - MIR SINE MIR 0 262 164 5631 106 12 19 chr3 211161126 211162068 -6875090 + L1MA5A LINE L1 5360 6294 -3 363 185 0 0 chr3 211162081 211162146 -6875012 - MIR SINE MIR -94 168 104 473 280 148 38 chr3 211162614 211162850 -6874308 + MIR SINE MIR 1 262 0 247 355 32 8 chr3 211163129 211163253 -6873905 - MER94 DNA DNA -2 132 6 22 80 0 0 chr3 211163483 211163533 -6873625 + AT_rich Low_complexity Low_complexity 1 50 0 444 323 8 0 chr3 211163660 211163784 -6873374 + L2 LINE L2 3189 3313 0 280 132 38 19 chr3 211165082 211165135 -6872023 - L2 LINE L2 -18 3254 3201 233 303 80 62 chr3 211165164 211165326 -6871832 - MIR3 SINE MIR -10 198 34 268 329 0 0 chr3 211166399 211166472 -6870686 + MIR3 SINE MIR 119 191 -17 449 233 19 0 chr3 211166534 211166637 -6870521 - MIR3 SINE MIR -6 202 98 185 275 77 88 chr3 211167037 211167128 -6870030 + L2 LINE L2 2972 3061 -211 1822 225 3 3 chr3 211167192 211167557 -6869601 + MLT1A1 LTR MaLR 1 365 0 266 296 0 0 chr3 211167563 211167634 -6869524 + L2 LINE L2 3202 3272 0 201 156 0 0 chr3 211168771 211168803 -6868355 + GA-rich Low_complexity Low_complexity 1 32 0 268 363 76 30 chr3 211169300 211169537 -6867621 + L2 LINE L2 2844 3091 -181 1595 168 0 4 chr3 211169678 211169946 -6867212 + Tigger7 DNA MER2_type 1 267 -2220 510 224 0 0 chr3 211169945 211170043 -6867115 + Tigger7 DNA MER2_type 2394 2491 0 * 326 258 48 32 chr3 211170084 211170208 -6866950 - MIR SINE MIR -134 128 3 303 71 0 0 chr3 211170266 211170308 -6866850 + (CA)n Simple_repeat Simple_repeat 2 43 0 207 0 0 0 chr3 211171106 211171129 -6866029 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 289 245 0 0 chr3 211172188 211172241 -6864917 + L2 LINE L2 3248 3300 -13 192 355 43 21 chr3 211172841 211172982 -6864176 - L2 LINE L2 -293 2979 2836 22942 25 0 0 chr3 211173421 211176913 -6860245 - L1PA2 LINE L1 -1 6154 2662 1841 140 21 7 chr3 211227821 211228133 -6809025 + AluSx SINE Alu 1 316 0 612 144 10 0 chr3 211228200 211228297 -6808861 - FRAM SINE Alu -19 157 60 2182 167 8 23 chr3 211229295 211229691 -6807467 + MLT1B LTR MaLR 1 390 0 216 246 33 0 chr3 211229785 211229846 -6807312 - MIR SINE MIR -105 103 41 181 318 119 33 chr3 211230579 211230730 -6806428 + MER5A DNA MER1_type 24 187 -2 230 298 46 38 chr3 211230591 211230722 -6806436 - MER5B DNA MER1_type -24 154 23 859 254 14 23 chr3 211230851 211231068 -6806090 - MLT1F1 LTR MaLR -3 564 350 229 181 83 28 chr3 211231187 211231259 -6805899 + MIR3 SINE MIR 88 163 -45 2158 210 107 50 chr3 211231278 211231320 -6805838 - L1ME1 LINE L1 -6 6160 6122 648 0 0 0 chr3 211231320 211231392 -6805766 + (TA)n Simple_repeat Simple_repeat 2 73 0 2178 92 0 3 chr3 211231395 211231677 -6805481 - AluY SINE Alu -30 281 1 2158 210 107 50 chr3 211231677 211232231 -6804927 - L1ME1 LINE L1 -45 6121 5526 335 71 0 0 chr3 211232370 211232412 -6804746 - Alu SINE Alu -18 284 243 1630 186 0 4 chr3 211232471 211232745 -6804413 - AluJo SINE Alu -28 284 12 595 144 162 0 chr3 211232768 211232879 -6804279 - FLAM_C SINE Alu -3 130 2 330 45 0 0 chr3 211232960 211233004 -6804154 + (TG)n Simple_repeat Simple_repeat 2 45 0 284 269 206 7 chr3 211233443 211233584 -6803574 + MER5A DNA MER1_type 9 177 -12 589 186 47 23 chr3 211233854 211233983 -6803175 + MLT1C LTR MaLR 336 467 0 308 336 35 0 chr3 211234137 211234253 -6802905 - L2 LINE L2 0 3272 3153 1888 178 40 8 chr3 211234253 211234607 -6802551 + MLT1A1 LTR MaLR 1 365 0 208 287 59 10 chr3 211234731 211234832 -6802326 - L2 LINE L2 -212 3060 2955 613 226 0 0 chr3 211235012 211235127 -6802031 - FLAM_C SINE Alu -22 121 7 2128 127 7 0 chr3 211235127 211235426 -6801732 - AluSq SINE Alu -9 304 4 1736 168 3 10 chr3 211236406 211236698 -6800460 + AluJb SINE Alu 21 310 -2 1808 196 88 23 chr3 211237010 211237444 -6799714 + MLT1F LTR MaLR 81 542 0 180 250 0 21 chr3 211237499 211237547 -6799611 + MIR SINE MIR 99 145 -63 368 275 60 30 chr3 211237556 211237723 -6799435 - MER104 DNA Tc2 -6 174 3 367 322 29 6 chr3 211238019 211238193 -6798965 - MER5B DNA MER1_type 0 178 1 2198 99 0 7 chr3 211238473 211238765 -6798393 + AluSg SINE Alu 2 291 -19 274 276 52 83 chr3 211239886 211240078 -6797080 + L2 LINE L2 3087 3272 0 1044 154 0 0 chr3 211240133 211240315 -6796843 + AluSg/x SINE Alu 137 318 0 249 139 0 0 chr3 211240384 211240427 -6796731 + (A)n Simple_repeat Simple_repeat 1 43 0 2322 71 4 0 chr3 211240769 211241049 -6796109 - AluSc SINE Alu -7 302 22 239 200 73 0 chr3 211241639 211241694 -6795464 - MIR3 SINE MIR -6 202 144 262 234 62 47 chr3 211241920 211242048 -6795110 - HAL1b LINE L1 -28 1320 1191 189 154 0 0 chr3 211242050 211242089 -6795069 + (TA)n Simple_repeat Simple_repeat 1 39 0 348 252 92 30 chr3 211242561 211242692 -6794466 + LTR16A1 LTR ERVL 319 457 0 2161 104 0 14 chr3 211242696 211243005 -6794153 - AluSg SINE Alu 0 305 1 2035 152 0 0 chr3 211244076 211244386 -6792772 - AluSx SINE Alu -2 310 1 1833 134 14 0 chr3 211245428 211245705 -6791453 - AluSx SINE Alu -2 310 30 385 294 31 19 chr3 211245850 211246010 -6791148 + L1ME3 LINE L1 6000 6161 -1 946 234 141 64 chr3 211246346 211246830 -6790328 + LTR33 LTR ERVL 1 521 0 22 35 0 0 chr3 211247239 211247268 -6789890 + AT_rich Low_complexity Low_complexity 1 29 0 315 311 19 0 chr3 211247685 211247788 -6789370 + MIR SINE MIR 43 147 -61 425 319 131 56 chr3 211247889 211248636 -6788522 + L2 LINE L2 2311 3095 -177 189 107 0 0 chr3 211249707 211249735 -6787423 + (A)n Simple_repeat Simple_repeat 1 28 0 2259 106 0 3 chr3 211249900 211250192 -6786966 + AluSp SINE Alu 1 291 -22 351 0 0 0 chr3 211251021 211251060 -6786098 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 434 133 27 0 chr3 211251679 211251754 -6785404 - AluJ/FRAM SINE Alu -19 293 217 215 270 206 0 chr3 211251759 211251822 -6785336 + L2 LINE L2 3238 3313 0 321 125 0 0 chr3 211251926 211251974 -6785184 - MIR3 SINE MIR -28 180 133 21 0 0 0 chr3 211252103 211252124 -6785034 + AT_rich Low_complexity Low_complexity 1 21 0 2480 76 0 16 chr3 211253409 211253723 -6783435 - AluY SINE Alu -1 310 2 276 268 177 8 chr3 211254050 211254204 -6782954 - MIR SINE MIR -70 192 21 302 289 132 0 chr3 211255070 211255184 -6781974 + MIR3 SINE MIR 77 205 -3 2237 82 34 7 chr3 211255852 211256144 -6781014 + AluSq SINE Alu 1 300 -13 194 250 31 16 chr3 211256245 211256309 -6780849 + MIR SINE MIR 85 149 -113 203 341 11 34 chr3 211256583 211256671 -6780487 - MIR SINE MIR -90 172 87 326 197 53 0 chr3 211256831 211256907 -6780251 - MIR SINE MIR -120 142 63 222 344 21 0 chr3 211256944 211257040 -6780118 - MIR SINE MIR -7 255 158 376 319 12 19 chr3 211257266 211257426 -6779732 + Charlie8 DNA MER1_type 1 159 -2258 343 120 0 0 chr3 211259650 211259700 -6777458 + AluS SINE Alu 225 274 -26 415 211 199 6 chr3 211260627 211260783 -6776375 + MER5A DNA MER1_type 4 189 0 240 180 40 0 chr3 211260940 211260990 -6776168 - L1MC5 LINE L1 -52 7909 7858 883 135 6 25 chr3 211261077 211261240 -6775918 - L1MB2 LINE L1 0 6171 6012 797 221 52 12 chr3 211261271 211261443 -6775715 + AluJo SINE Alu 114 292 -20 243 167 0 0 chr3 211261444 211261486 -6775672 - L1MC5 LINE L1 -311 7650 7609 2349 89 0 0 chr3 211262338 211262631 -6774527 + AluSg1 SINE Alu 1 293 -16 2540 47 0 3 chr3 211263929 211264229 -6772929 + AluY SINE Alu 1 299 -12 991 159 55 5 chr3 211265227 211265428 -6771730 - LTR37B LTR ERV1 0 468 258 1094 96 0 0 chr3 211265428 211265563 -6771595 + AluSq/x SINE Alu 1 135 -177 2291 110 7 0 chr3 211265563 211265862 -6771296 + AluSq SINE Alu 1 301 -12 950 211 15 10 chr3 211265946 211266145 -6771013 - LTR37B LTR ERV1 -260 208 9 782 87 4 2 chr3 211266222 211266463 -6770695 + AluSp SINE Alu 2 293 -20 245 287 59 40 chr3 211267222 211267323 -6769835 - MIR3 SINE MIR -92 116 14 654 247 202 18 chr3 211267425 211267648 -6769510 - Charlie8 DNA MER1_type -2142 275 12 1672 118 126 0 chr3 211267681 211267944 -6769214 + AluJb SINE Alu 1 296 -16 811 160 8 0 chr3 211268196 211268315 -6768843 - FLAM_A SINE Alu -12 130 11 189 322 124 38 chr3 211268799 211269077 -6768081 - L2 LINE L2 -225 3047 2748 2335 98 13 0 chr3 211269218 211269523 -6767635 + AluSx SINE Alu 1 309 -3 376 296 259 17 chr3 211269554 211269974 -6767184 - L2 LINE L2 -614 2700 2383 2645 52 0 3 chr3 211269974 211270280 -6766878 + AluY SINE Alu 1 305 -6 376 296 259 17 chr3 211270280 211270450 -6766708 - L2 LINE L2 -931 2383 1967 2378 79 0 0 chr3 211270632 211270924 -6766234 + AluSg SINE Alu 1 292 -18 1107 61 0 0 chr3 211271259 211271391 -6765767 + AluY SINE Alu 1 132 -179 586 255 109 5 chr3 211272313 211272497 -6764661 + MIR SINE MIR 35 237 -25 384 219 44 44 chr3 211272526 211272663 -6764495 + MIR3 SINE MIR 72 208 0 215 315 0 94 chr3 211273272 211273399 -6763759 + MIR3 SINE MIR 93 207 -1 843 216 44 31 chr3 211273482 211273600 -6763558 + MIR SINE MIR 33 157 -105 2140 182 28 24 chr3 211273600 211274024 -6763134 + MSTB LTR MaLR 1 426 0 843 216 44 31 chr3 211274024 211274132 -6763026 + MIR SINE MIR 157 262 0 315 276 23 0 chr3 211274201 211274288 -6762870 + MIR SINE MIR 41 129 -79 948 197 39 0 chr3 211274499 211274677 -6762481 + MER5A DNA MER1_type 3 187 -2 1074 129 9 137 chr3 211275267 211275328 -6761830 + AluJb SINE Alu 85 152 -160 2295 100 3 0 chr3 211275328 211275637 -6761521 + AluSg SINE Alu 1 310 0 1074 129 9 137 chr3 211275637 211275808 -6761350 + AluJb SINE Alu 152 287 -25 447 231 76 47 chr3 211275936 211276106 -6761052 + MIR SINE MIR 40 212 -50 409 274 126 59 chr3 211276510 211276882 -6760276 + L2 LINE L2 2912 3308 -5 205 270 36 13 chr3 211277566 211277653 -6759505 + MIR SINE MIR 74 161 -62 566 188 88 56 chr3 211278305 211278438 -6758720 - MLT1F1 LTR MaLR -402 165 25 2503 74 0 0 chr3 211278438 211278737 -6758421 - AluY SINE Alu -12 299 1 566 188 88 56 chr3 211278737 211278763 -6758395 - MLT1F1 LTR MaLR -542 25 1 209 318 12 0 chr3 211279588 211279673 -6757485 + (TATATG)n Simple_repeat Simple_repeat 5 90 0 306 73 0 0 chr3 211280409 211280450 -6756708 + (T)n Simple_repeat Simple_repeat 1 41 0 188 353 60 23 chr3 211280975 211281108 -6756050 + MIR SINE MIR 9 146 -116 1702 203 108 45 chr3 211281274 211281782 -6755376 + MLT1F LTR MaLR 1 540 -2 271 281 49 0 chr3 211283063 211283145 -6754013 - MIR3 SINE MIR -42 166 81 220 279 87 29 chr3 211283692 211283796 -6753362 + MIR SINE MIR 40 149 -113 1703 143 47 21 chr3 211285806 211286085 -6751073 + AluJo SINE Alu 1 286 -26 26 30 0 0 chr3 211286086 211286119 -6751039 + AT_rich Low_complexity Low_complexity 1 33 0 260 275 62 0 chr3 211286323 211286403 -6750755 - MIR SINE MIR -6 256 172 2241 80 0 4 chr3 211289350 211289626 -6747532 - AluSg SINE Alu -35 275 1 280 288 42 93 chr3 211289661 211289897 -6747261 + L2 LINE L2 3089 3312 -1 2239 103 7 3 chr3 211289928 211290228 -6746930 - AluSg SINE Alu -9 301 1 343 259 233 16 chr3 211290947 211291140 -6746018 + MIR SINE MIR 16 250 -12 1817 157 48 20 chr3 211291146 211291488 -6745670 + L1MB7 LINE L1 5767 6121 -63 2166 118 0 31 chr3 211291488 211291810 -6745348 - AluSx SINE Alu 0 312 1 1817 157 48 20 chr3 211291810 211291823 -6745335 + L1MB7 LINE L1 6121 6132 -52 300 27 0 0 chr3 211293029 211293066 -6744092 + (TC)n Simple_repeat Simple_repeat 2 38 0 8445 148 55 3 chr3 211293692 211295062 -6742096 + Tigger1 DNA MER2_type 1 1441 -977 1108 124 138 29 chr3 211295074 211295112 -6742046 + Tigger1 DNA MER2_type 2185 2217 -201 2088 125 0 7 chr3 211295112 211295408 -6741750 - AluSg SINE Alu -16 294 1 1108 124 138 29 chr3 211295408 211295579 -6741579 + Tigger1 DNA MER2_type 2217 2417 -1 247 309 135 24 chr3 211295587 211295713 -6741445 - MIR SINE MIR -111 151 12 1937 129 57 0 chr3 211295805 211296085 -6741073 + AluSx SINE Alu 3 298 -14 342 321 55 24 chr3 211296273 211296438 -6740720 + MIR SINE MIR 23 192 -70 1917 162 10 0 chr3 211296556 211296865 -6740293 - AluJb SINE Alu 0 312 1 2377 109 0 0 chr3 211297780 211298093 -6739065 + AluSp SINE Alu 1 313 0 352 286 117 48 chr3 211299378 211299626 -6737532 + L2 LINE L2 3008 3272 0 258 116 0 0 chr3 211300300 211300343 -6736815 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2461 66 10 3 chr3 211301462 211301766 -6735392 + AluSp SINE Alu 1 306 -7 203 361 148 7 chr3 211301838 211302129 -6735029 + L3 LINE CR1 736 1067 -510 233 303 131 8 chr3 211302333 211302455 -6734703 + L3 LINE CR1 1344 1480 -97 418 261 152 16 chr3 211302500 211302684 -6734474 + MLT1K LTR MaLR 2 210 -257 742 179 8 0 chr3 211302695 211302818 -6734340 - MLT1A1 LTR MaLR -7 358 235 21 0 0 0 chr3 211303190 211303211 -6733947 + AT_rich Low_complexity Low_complexity 1 21 0 189 300 43 0 chr3 211304034 211304104 -6733054 + MIR3 SINE MIR 92 164 -44 799 263 115 33 chr3 211304106 211304598 -6732560 + MLT1H1 LTR MaLR 4 590 0 453 241 153 12 chr3 211304811 211304981 -6732177 + MLT1K LTR MaLR 361 554 -34 1818 122 0 0 chr3 211305485 211305732 -6731426 + AluSx SINE Alu 49 295 -17 623 143 0 9 chr3 211305732 211305844 -6731314 + (GGAA)n Simple_repeat Simple_repeat 1 111 0 1884 100 39 68 chr3 211306872 211307183 -6729975 + AluSx SINE Alu 1 302 -10 206 62 31 0 chr3 211307183 211307215 -6729943 + (GGAA)n Simple_repeat Simple_repeat 1 33 0 373 305 31 8 chr3 211307837 211307965 -6729193 - L2 LINE L2 -1 3312 3182 2555 40 0 0 chr3 211308758 211309055 -6728103 + AluY SINE Alu 1 297 -14 2373 64 0 61 chr3 211309682 211310008 -6727150 - AluY SINE Alu -5 306 1 1826 224 47 30 chr3 211310128 211310264 -6726894 - Charlie4a DNA MER1_type -1462 499 367 2614 55 0 3 chr3 211310264 211310573 -6726585 + AluY SINE Alu 1 308 -3 1826 224 47 30 chr3 211310573 211310927 -6726231 - Charlie4a DNA MER1_type -1594 367 1 2350 88 3 22 chr3 211310939 211311257 -6725901 + AluSx SINE Alu 1 312 0 1720 129 21 59 chr3 211311478 211311765 -6725393 + AluJb SINE Alu 5 280 -32 304 289 20 45 chr3 211312258 211312398 -6724760 - MIR SINE MIR -69 139 30 237 271 168 54 chr3 211312414 211312617 -6724541 + MIR SINE MIR 17 242 -20 236 329 0 12 chr3 211313535 211313620 -6723538 + L2 LINE L2 3188 3271 -1 2462 82 0 13 chr3 211313677 211313993 -6723165 + AluSq SINE Alu 1 312 -1 212 221 157 64 chr3 211314074 211314212 -6722946 + MIR SINE MIR 16 166 -61 1703 167 0 7 chr3 211314431 211314707 -6722451 + AluJb SINE Alu 28 301 -11 1757 175 3 29 chr3 211314832 211315140 -6722018 + AluJo SINE Alu 1 300 -12 356 321 50 25 chr3 211315413 211315572 -6721586 + MIR SINE MIR 20 182 -80 207 0 0 0 chr3 211317389 211317412 -6719746 + (TA)n Simple_repeat Simple_repeat 2 24 0 186 43 0 0 chr3 211318876 211318899 -6718259 + (CA)n Simple_repeat Simple_repeat 1 23 0 383 234 54 0 chr3 211320556 211320667 -6716491 + MIR SINE MIR 127 243 -19 713 220 44 13 chr3 211320985 211321144 -6716014 - AluJb SINE Alu -17 295 132 2067 113 3 3 chr3 211321432 211321742 -6715416 + AluSx SINE Alu 1 310 0 181 343 56 0 chr3 211322423 211322531 -6714627 + L2 LINE L2 3155 3268 -4 2230 125 0 0 chr3 211322549 211322853 -6714305 + AluSg SINE Alu 1 304 -6 205 204 23 0 chr3 211323052 211323096 -6714062 + GA-rich Low_complexity Low_complexity 2 46 0 192 291 26 51 chr3 211323658 211323775 -6713383 - MIR3 SINE MIR -2 206 93 31 0 0 0 chr3 211323890 211323921 -6713237 + AT_rich Low_complexity Low_complexity 1 31 0 2306 100 0 19 chr3 211324147 211324456 -6712702 - AluSg SINE Alu -7 303 1 202 186 20 157 chr3 211324974 211325076 -6712082 - MIR SINE MIR -68 194 107 292 279 57 144 chr3 211325097 211325395 -6711763 + L2 LINE L2 3001 3272 0 24 32 0 0 chr3 211326069 211326100 -6711058 + AT_rich Low_complexity Low_complexity 1 31 0 683 306 63 15 chr3 211326100 211326371 -6710787 + L3 LINE CR1 1293 1576 -1 2345 70 33 0 chr3 211326573 211326872 -6710286 - AluY SINE Alu -2 309 1 207 0 0 0 chr3 211327146 211327169 -6709989 + (A)n Simple_repeat Simple_repeat 1 23 0 2148 106 6 6 chr3 211327169 211327480 -6709678 + AluY SINE Alu 1 311 0 225 65 0 0 chr3 211327656 211327687 -6709471 + (GA)n Simple_repeat Simple_repeat 1 31 0 221 174 0 22 chr3 211327864 211327910 -6709248 + GA-rich Low_complexity Low_complexity 4 48 0 253 229 0 83 chr3 211328024 211328120 -6709038 - AluSg/x SINE Alu -4 298 211 2250 109 7 0 chr3 211328266 211328559 -6708599 - AluSx SINE Alu -17 295 1 209 317 162 14 chr3 211328634 211328776 -6708382 + MIR3 SINE MIR 31 193 -15 186 273 78 26 chr3 211329671 211329748 -6707410 - MIR SINE MIR -70 138 58 405 300 27 0 chr3 211329970 211330080 -6707078 - L2 LINE L2 -1 3312 3200 1687 162 63 33 chr3 211330081 211330415 -6706743 - MLT2C1 LTR ERVL -52 345 2 2563 63 0 6 chr3 211332553 211332870 -6704288 + AluYb8 SINE Alu 1 315 -3 1333 91 0 6 chr3 211332872 211333047 -6704111 + AluY SINE Alu 126 299 -12 1987 131 14 0 chr3 211333059 211333350 -6703808 + AluSx SINE Alu 1 295 -17 27 29 0 0 chr3 211333929 211333963 -6703195 + AT_rich Low_complexity Low_complexity 1 34 0 269 109 22 0 chr3 211333970 211334016 -6703142 + (TA)n Simple_repeat Simple_repeat 2 48 0 252 106 0 0 chr3 211334016 211334063 -6703095 + LTR66 LTR ERVL 394 440 -170 576 148 0 102 chr3 211334063 211334191 -6702967 - FLAM_A SINE Alu -10 132 18 1655 185 0 13 chr3 211334456 211334633 -6702525 - AluJb SINE Alu -3 309 136 1864 156 3 20 chr3 211334633 211334935 -6702223 - AluSx SINE Alu -15 297 1 1655 185 0 13 chr3 211334935 211335070 -6702088 - AluJb SINE Alu -176 136 1 387 274 165 28 chr3 211335307 211335519 -6701639 - MLT1K LTR MaLR -198 390 150 408 20 0 0 chr3 211335639 211335688 -6701470 + (CA)n Simple_repeat Simple_repeat 2 50 0 448 190 3 113 chr3 211335924 211336085 -6701073 + L1MA2 LINE L1 5993 6142 -162 420 20 0 0 chr3 211336086 211336135 -6701023 + (TG)n Simple_repeat Simple_repeat 2 50 0 1095 186 10 5 chr3 211336180 211336373 -6700785 - AluJo SINE Alu -92 220 27 944 147 102 0 chr3 211336373 211336550 -6700608 + L1MA3 LINE L1 6111 6305 0 2029 145 137 8 chr3 211336580 211336946 -6700212 + MSTA LTR MaLR 1 413 -15 364 259 98 21 chr3 211337211 211337354 -6699804 + MLT1J2 LTR MaLR 243 396 -54 2293 102 0 7 chr3 211337370 211337673 -6699485 - AluSx SINE Alu -9 303 3 2199 115 10 0 chr3 211337923 211338227 -6698931 - AluSx SINE Alu -5 307 1 195 292 62 31 chr3 211338852 211338903 -6698255 - MIR3 SINE MIR -1 207 159 2040 68 0 8 chr3 211338903 211339152 -6698006 - AluSc SINE Alu -21 288 42 195 292 62 31 chr3 211339152 211339196 -6697962 - MIR3 SINE MIR -49 159 109 4510 85 186 35 chr3 211340028 211340745 -6696413 - LTR12 LTR ERV1 0 826 2 2368 66 3 3 chr3 211341115 211341471 -6695687 + AluY SINE Alu 1 311 0 263 292 150 0 chr3 211342014 211342127 -6695031 - MIR SINE MIR -71 191 62 2552 71 0 0 chr3 211342236 211342545 -6694613 + AluY SINE Alu 3 311 0 1968 151 3 0 chr3 211342762 211343053 -6694105 - AluJb SINE Alu -18 294 3 222 192 0 0 chr3 211343307 211343359 -6693799 + CT-rich Low_complexity Low_complexity 4 55 0 1774 204 55 33 chr3 211344072 211344524 -6692634 + MLT1C LTR MaLR 6 467 0 336 288 36 0 chr3 211344750 211344861 -6692297 - MIR SINE MIR -71 137 23 2207 111 0 19 chr3 211345420 211345727 -6691431 - AluSx SINE Alu -11 301 1 291 231 43 17 chr3 211345867 211345969 -6691189 - MIR3 SINE MIR -40 168 88 261 293 69 103 chr3 211345997 211346287 -6690871 + L1MC/D LINE L1 5374 5653 -2155 244 349 12 0 chr3 211346557 211346643 -6690515 + MIR SINE MIR 36 122 -140 299 24 0 24 chr3 211346845 211346886 -6690272 + (TG)n Simple_repeat Simple_repeat 2 41 0 310 307 14 21 chr3 211347068 211347208 -6689950 + LTR16C LTR ERVL 330 468 -23 277 253 0 40 chr3 211347231 211347330 -6689828 + MIR SINE MIR 168 262 0 189 381 45 19 chr3 211347625 211347780 -6689378 - L3b LINE CR1 -160 1423 1265 185 0 40 0 chr3 211348069 211348094 -6689064 + (TG)n Simple_repeat Simple_repeat 1 26 0 503 345 106 26 chr3 211348204 211348758 -6688400 + L2 LINE L2 2715 3309 -4 1044 215 88 23 chr3 211349001 211349308 -6687850 + L1ME1 LINE L1 4709 5035 -1111 1740 131 44 20 chr3 211349340 211349637 -6687521 - AluJb SINE Alu -8 304 1 1317 149 71 48 chr3 211349725 211349993 -6687165 - MLT1D LTR MaLR -44 461 188 2631 234 48 63 chr3 211349996 211350400 -6686758 + L1ME1 LINE L1 5086 5494 -672 2347 115 3 0 chr3 211350400 211350712 -6686446 + AluSp SINE Alu 1 313 0 2631 234 48 63 chr3 211350712 211351405 -6685753 + L1ME1 LINE L1 5494 6165 -1 307 297 24 86 chr3 211351436 211351547 -6685611 + MIR SINE MIR 54 149 -113 2169 86 4 4 chr3 211351547 211351876 -6685282 + AluSc SINE Alu 1 329 0 307 297 24 86 chr3 211351876 211351972 -6685186 + MIR SINE MIR 149 249 -13 312 331 119 0 chr3 211352088 211352248 -6684910 + MIR SINE MIR 84 262 0 351 65 0 0 chr3 211352761 211352807 -6684351 + (CAT)n Simple_repeat Simple_repeat 2 47 0 308 359 35 7 chr3 211353150 211353295 -6683863 - MIR3 SINE MIR -22 186 38 365 328 66 23 chr3 211353608 211353782 -6683376 - L1ME3A LINE L1 -289 5881 5691 694 213 0 0 chr3 211353782 211353909 -6683249 - FLAM_A SINE Alu -6 127 1 365 328 66 23 chr3 211353909 211353993 -6683165 - L1ME3A LINE L1 -479 5691 5612 2412 53 0 11 chr3 211354209 211354521 -6682637 + AluY SINE Alu 1 309 0 316 280 49 42 chr3 211354611 211354754 -6682404 - L1ME3A LINE L1 -1089 5057 4914 5543 134 10 8 chr3 211354812 211356071 -6681087 - L1PA16 LINE L1 0 6166 4903 2122 149 0 0 chr3 211356175 211356484 -6680674 - AluJb SINE Alu -1 311 3 354 195 0 0 chr3 211357414 211357501 -6679657 + (TG)n Simple_repeat Simple_repeat 2 88 0 1762 180 0 13 chr3 211357737 211358053 -6679105 - AluJb SINE Alu 0 312 1 750 269 42 0 chr3 211358875 211359087 -6678071 + MIR SINE MIR 23 243 -19 602 236 93 37 chr3 211359430 211359676 -6677482 - MIR SINE MIR -2 260 1 2244 135 28 8 chr3 211361139 211361494 -6675664 - THE1B LTR MaLR 0 364 3 7979 16 0 2 chr3 211361663 211362820 -6674338 - L1PA3 LINE L1 0 6155 5001 14157 36 1 8 chr3 211362820 211364578 -6672580 - L1PA3 LINE L1 -1826 4320 2576 545 236 16 16 chr3 211365135 211365258 -6671900 + MER3 DNA MER1_type 7 129 -80 2197 83 21 10 chr3 211365258 211365548 -6671610 - AluSc SINE Alu -16 293 1 414 258 97 46 chr3 211365984 211366201 -6670957 + MIR SINE MIR 2 229 -33 268 280 10 0 chr3 211366476 211366576 -6670582 - L1MC4 LINE L1 -1 8041 7941 2473 68 3 0 chr3 211366873 211367169 -6669989 - AluY SINE Alu -14 297 1 317 340 10 0 chr3 211367441 211367541 -6669617 + (CCCA)n Simple_repeat Simple_repeat 2 102 0 311 250 9 0 chr3 211367554 211367670 -6669488 + (TCCA)n Simple_repeat Simple_repeat 2 118 0 309 338 15 8 chr3 211367731 211367864 -6669294 + (TCCA)n Simple_repeat Simple_repeat 2 135 0 32 67 0 0 chr3 211370133 211370193 -6666965 + AT_rich Low_complexity Low_complexity 1 60 0 436 275 167 51 chr3 211370294 211370840 -6666318 + L1M4 LINE L1 3036 3644 -2502 225 262 98 71 chr3 211370841 211371024 -6666134 + L1M4 LINE L1 3692 3879 -2267 30 0 0 0 chr3 211371066 211371096 -6666062 + AT_rich Low_complexity Low_complexity 1 30 0 192 261 57 11 chr3 211373140 211373228 -6663930 + L2 LINE L2 2146 2237 -1077 804 186 10 41 chr3 211373568 211373762 -6663396 - AluSq SINE Alu -125 188 1 431 35 0 0 chr3 211373975 211374032 -6663126 - AluY SINE Alu -7 304 248 673 230 94 52 chr3 211374103 211374316 -6662842 - MIR SINE MIR -25 237 16 393 188 178 10 chr3 211374970 211375071 -6662087 + L2 LINE L2 3195 3312 -1 653 162 84 14 chr3 211375160 211375302 -6661856 - MIR SINE MIR -21 241 90 2432 50 3 7 chr3 211375853 211376152 -6661006 - AluY SINE Alu -13 298 1 833 168 0 0 chr3 211376181 211376312 -6660846 - FLAM_C SINE Alu -2 131 1 949 130 54 30 chr3 211376337 211376381 -6660777 - L1M4 LINE L1 -739 5435 5394 1875 174 0 3 chr3 211376381 211376674 -6660484 - AluJb SINE Alu -20 292 1 949 130 54 30 chr3 211376674 211376884 -6660274 - L1M4 LINE L1 -780 5394 5179 181 88 59 29 chr3 211377481 211377515 -6659643 - MER5A DNA MER1_type -24 165 131 2208 121 3 7 chr3 211377520 211377826 -6659332 + AluSq SINE Alu 1 305 -8 1871 95 95 7 chr3 211377836 211378121 -6659037 + AluSx SINE Alu 2 311 -1 315 206 0 0 chr3 211378158 211378226 -6658932 + L1MC4 LINE L1 7098 7165 -877 580 30 0 0 chr3 211378355 211378422 -6658736 - AluY SINE Alu -29 282 216 1996 142 20 41 chr3 211378514 211378858 -6658300 + MER1B DNA MER1_type 1 337 0 707 200 89 0 chr3 211379278 211379413 -6657745 + FRAM SINE Alu 8 154 -22 324 253 93 78 chr3 211379919 211380142 -6657016 - MIR SINE MIR 0 262 33 1993 138 0 10 chr3 211380142 211380440 -6656718 - AluJo SINE Alu -17 295 1 324 253 93 78 chr3 211380440 211380473 -6656685 - MIR SINE MIR -229 33 2 216 0 0 0 chr3 211381126 211381150 -6656008 + (T)n Simple_repeat Simple_repeat 1 24 0 467 269 120 37 chr3 211381522 211381738 -6655420 - MIR SINE MIR -20 242 9 4369 82 206 35 chr3 211383595 211384300 -6652858 - LTR12 LTR ERV1 0 826 2 2279 116 3 0 chr3 211384670 211384980 -6652178 + AluY SINE Alu 1 311 0 11756 153 26 13 chr3 211384981 211388201 -6648957 + L1MA3 LINE L1 3036 6305 0 726 269 117 52 chr3 211388208 211388532 -6648626 + MLT1J1 LTR MaLR 93 437 -9 1051 152 5 78 chr3 211388535 211388598 -6648560 - MER5A DNA MER1_type 0 189 123 2382 97 0 3 chr3 211388598 211388908 -6648250 + AluSc SINE Alu 1 309 0 1051 152 5 78 chr3 211388908 211389048 -6648110 - MER5A DNA MER1_type -66 123 1 308 339 129 35 chr3 211389136 211389653 -6647505 - L2 LINE L2 -8 3305 2739 43 35 0 0 chr3 211389726 211389783 -6647375 + AT_rich Low_complexity Low_complexity 1 57 0 2357 75 7 0 chr3 211389795 211390088 -6647070 + AluSp SINE Alu 5 299 -14 32 40 0 53 chr3 211390091 211390142 -6647016 + AT_rich Low_complexity Low_complexity 1 48 -24 1006 167 0 11 chr3 211390142 211390328 -6646830 + L1MA3 LINE L1 6119 6302 -3 32 40 0 53 chr3 211390328 211390352 -6646806 + AT_rich Low_complexity Low_complexity 48 72 0 1540 114 27 0 chr3 211390572 211390792 -6646366 - AluSg/x SINE Alu -1 309 84 2425 70 7 7 chr3 211391964 211392265 -6644893 - AluSq SINE Alu -12 301 1 2379 97 10 0 chr3 211392522 211392832 -6644326 + AluSp SINE Alu 1 313 0 188 227 61 45 chr3 211392849 211392915 -6644243 - L2 LINE L2 -69 3203 3137 180 0 0 0 chr3 211394018 211394038 -6643120 + (TA)n Simple_repeat Simple_repeat 1 20 0 2420 75 0 0 chr3 211394041 211394334 -6642824 - AluSx SINE Alu -19 293 1 353 273 36 0 chr3 211394459 211394569 -6642589 - MIR SINE MIR -93 169 56 743 191 0 0 chr3 211394602 211394728 -6642430 - FLAM_C SINE Alu -7 126 1 208 257 89 94 chr3 211395098 211395226 -6641932 - L2 LINE L2 -36 3277 3149 1358 170 100 15 chr3 211395226 211395497 -6641661 + AluSx SINE Alu 1 294 -18 208 257 89 94 chr3 211395497 211395570 -6641588 - L2 LINE L2 -164 3149 3077 41 0 0 0 chr3 211395602 211395643 -6641515 + AT_rich Low_complexity Low_complexity 1 41 0 1929 155 3 0 chr3 211395643 211395927 -6641231 - AluSq SINE Alu -24 289 5 245 297 85 25 chr3 211396253 211396371 -6640787 + MIR SINE MIR 20 144 -64 29 28 0 0 chr3 211396842 211396878 -6640280 + AT_rich Low_complexity Low_complexity 1 36 0 325 367 23 11 chr3 211397514 211397691 -6639467 - MIR3 SINE MIR -14 194 16 1176 122 2 28 chr3 211397920 211398124 -6639034 + L1MA8 LINE L1 5596 5790 -394 1767 136 9 54 chr3 211398153 211398470 -6638688 - AluJb SINE Alu -9 303 1 255 196 98 80 chr3 211398479 211398591 -6638567 - L2 LINE L2 -21 3251 3138 2988 128 20 24 chr3 211398619 211399128 -6638030 + L1MA8 LINE L1 5784 6290 -1 23 33 0 0 chr3 211399128 211399158 -6638000 + AT_rich Low_complexity Low_complexity 1 30 0 1830 146 36 0 chr3 211399743 211400017 -6637141 + AluJo SINE Alu 1 284 -28 189 107 0 0 chr3 211400022 211400050 -6637108 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 335 210 16 42 chr3 211400432 211400594 -6636564 + MIR SINE MIR 112 234 -28 212 319 72 36 chr3 211400630 211400796 -6636362 - MIR3 SINE MIR -6 202 31 534 29 0 0 chr3 211400863 211400931 -6636227 - AluY SINE Alu -6 306 239 2646 165 5 0 chr3 211401051 211401482 -6635676 + MER41B LTR ERV1 130 562 -73 196 254 17 0 chr3 211402468 211402527 -6634631 + MIR SINE MIR 70 129 -133 1143 289 79 28 chr3 211402750 211402954 -6634204 + L2 LINE L2 660 852 -2462 2057 129 7 10 chr3 211402954 211403256 -6633902 - AluSx SINE Alu -11 301 1 1143 289 79 28 chr3 211403256 211403583 -6633575 + L2 LINE L2 852 1218 -2096 4270 144 22 12 chr3 211403600 211404323 -6632835 - L1PA16 LINE L1 -9 6157 5428 2803 85 95 7 chr3 211404323 211404735 -6632423 + LTR7 LTR ERV1 1 448 -2 13908 93 5 24 chr3 211404737 211407769 -6629389 + HERVH LTR ERV1 1 2987 -4726 877 128 20 0 chr3 211407763 211407911 -6629247 + HERVH LTR ERV1 3140 3290 -4423 * 3176 113 4 6 chr3 211407901 211408404 -6628754 + HERVH LTR ERV1 3492 3993 -3720 4222 137 0 1 chr3 211408406 211409069 -6628089 + HERVH LTR ERV1 4488 5149 -2564 1280 139 19 0 chr3 211409070 211409286 -6627872 + HERVH LTR ERV1 5600 5819 -1894 2205 98 48 13 chr3 211409286 211409662 -6627496 + HERVH LTR ERV1 7324 7712 -1 2683 72 111 5 chr3 211409663 211410068 -6627090 + LTR7 LTR ERV1 1 448 -2 4302 191 20 5 chr3 211410070 211411101 -6626057 - L1PA16 LINE L1 -734 5432 4383 201 143 0 0 chr3 211411106 211411141 -6626017 + (TG)n Simple_repeat Simple_repeat 2 36 0 23 33 0 0 chr3 211411170 211411200 -6625958 + AT_rich Low_complexity Low_complexity 1 30 0 3918 108 0 20 chr3 211411200 211411248 -6625910 - L1PB1 LINE L1 -8 6143 6096 2250 121 0 0 chr3 211411248 211411545 -6625613 - AluSc SINE Alu -12 297 1 3918 108 0 20 chr3 211411545 211412089 -6625069 - L1PB1 LINE L1 -55 6096 5563 14642 206 8 5 chr3 211412091 211416113 -6621045 - L1PB1 LINE L1 -669 5482 1456 1155 195 24 0 chr3 211416115 211416366 -6620792 - L1MEc LINE L1 -1762 4453 4197 2098 263 50 34 chr3 211416369 211417020 -6620138 + L2 LINE L2 1206 1872 -1442 180 0 0 0 chr3 211417020 211417040 -6620118 + (CAAAA)n Simple_repeat Simple_repeat 5 24 0 2098 263 50 34 chr3 211417040 211417122 -6620036 + L2 LINE L2 1872 1951 -1363 1487 273 105 30 chr3 211417129 211417888 -6619270 + L2 LINE L2 2488 3310 -3 224 311 219 0 chr3 211418580 211418699 -6618459 + MIR3 SINE MIR 17 161 -47 333 301 56 51 chr3 211419495 211419691 -6617467 - MIR3 SINE MIR -11 197 1 332 113 11 94 chr3 211419974 211420359 -6616799 + (TA)n Simple_repeat Simple_repeat 1 352 0 2301 97 0 7 chr3 211420359 211420657 -6616501 - AluSg SINE Alu -14 296 1 2956 227 28 46 chr3 211421005 211421690 -6615468 - L1MEc LINE L1 -2924 3291 2595 848 127 0 0 chr3 211421690 211421824 -6615334 + L1MA2 LINE L1 6171 6304 0 2956 227 28 46 chr3 211421824 211422656 -6614502 - L1MEc LINE L1 -3620 2595 1837 7428 78 10 1 chr3 211423038 211424150 -6613008 - L1P LINE L1 -735 5419 4294 6132 26 3 3 chr3 211424150 211424870 -6612288 + L1PA5 LINE L1 5433 6153 -1 281 250 0 29 chr3 211424876 211424944 -6612214 - MIR SINE MIR -147 115 50 1195 235 18 61 chr3 211425632 211426023 -6611135 + MLT1A2 LTR MaLR 1 374 0 25 51 0 0 chr3 211426634 211426673 -6610485 + AT_rich Low_complexity Low_complexity 1 39 0 394 289 21 21 chr3 211426673 211426815 -6610343 + L1MCa LINE L1 1393 1534 -4892 250 280 47 7 chr3 211426820 211426970 -6610188 + L1MCa LINE L1 1775 1930 -4677 1975 249 57 112 chr3 211427118 211427280 -6609878 + L1MCa LINE L1 2152 2321 -4105 1601 173 82 23 chr3 211427280 211427632 -6609526 - THE1C LTR MaLR -2 373 1 1975 249 57 112 chr3 211427632 211428639 -6608519 + L1MCa LINE L1 2321 3382 -3044 907 188 50 6 chr3 211428639 211428799 -6608359 - FRAM SINE Alu -10 166 1 1975 249 57 112 chr3 211428799 211429946 -6607212 + L1MCa LINE L1 3382 4447 -1979 681 290 97 5 chr3 211429944 211430368 -6606790 + L1M4 LINE L1 2445 2907 -3239 * 416 298 153 0 chr3 211430518 211430760 -6606398 + L1M4 LINE L1 3593 3871 -2275 2142 112 3 3 chr3 211431222 211431509 -6605649 - AluSx SINE Alu -24 288 2 289 175 0 16 chr3 211433465 211433528 -6603630 - MER58 DNA MER1_type -1 2419 2358 468 214 0 68 chr3 211433594 211433633 -6603525 - MER58 DNA MER1_type -105 110 70 2347 87 3 0 chr3 211433633 211433932 -6603226 + AluSx SINE Alu 1 300 -12 468 214 0 68 chr3 211433932 211434009 -6603149 - MER58 DNA MER1_type -145 70 2 287 358 64 0 chr3 211434044 211434217 -6602941 + MER115 DNA AcHobo 83 266 -427 692 258 24 94 chr3 211434241 211434359 -6602799 + MER115 DNA AcHobo 417 542 -151 1687 179 3 10 chr3 211434359 211434660 -6602498 + AluJb SINE Alu 1 299 -13 692 258 24 94 chr3 211434660 211434839 -6602319 + MER115 DNA AcHobo 542 693 0 263 319 74 48 chr3 211435108 211435176 -6601982 - Charlie8 DNA MER1_type -85 256 191 1549 127 5 0 chr3 211435176 211435422 -6601736 + AluSg/x SINE Alu 67 313 0 263 319 74 48 chr3 211435422 211435579 -6601579 - Charlie8 DNA MER1_type -150 191 22 827 203 43 29 chr3 211435618 211435825 -6601333 + MLT2B1 LTR ERVL 3 212 -308 2278 144 31 70 chr3 211435827 211436272 -6600886 + MSTA LTR MaLR 1 428 0 5912 178 27 10 chr3 211436272 211437413 -6599745 + MSTA-int LTR MaLR 1 1161 -490 2015 144 6 18 chr3 211437434 211437774 -6599384 - MER4E LTR ERV1 -19 760 425 320 43 22 0 chr3 211437776 211437822 -6599336 + (TG)n Simple_repeat Simple_repeat 2 48 0 290 316 92 40 chr3 211437977 211438151 -6599007 + MIR3 SINE MIR 20 202 -6 891 175 24 19 chr3 211438851 211439057 -6598101 - L1MB8 LINE L1 -2 6176 5970 766 239 38 44 chr3 211439209 211439444 -6597714 + MIR SINE MIR 32 262 0 312 252 214 15 chr3 211439499 211439630 -6597528 - MIR3 SINE MIR -35 173 17 273 0 0 0 chr3 211439655 211439686 -6597472 - U6 snRNA snRNA -76 31 1 253 234 16 0 chr3 211440921 211440985 -6596173 + MLT1K LTR MaLR 522 586 -2 1355 111 0 0 chr3 211441265 211441437 -6595721 - AluSc SINE Alu -6 303 132 2309 71 0 14 chr3 211441437 211441731 -6595427 - AluY SINE Alu -19 292 3 425 364 0 0 chr3 211441733 211441865 -6595293 + MIR3 SINE MIR 54 185 -23 1978 159 38 37 chr3 211441969 211442519 -6594639 + MLT2A2 LTR ERVL 1 554 0 263 252 113 35 chr3 211442687 211442802 -6594356 - L2 LINE L2 -1 3312 3189 433 276 110 6 chr3 211442908 211443071 -6594087 - MIR SINE MIR 0 262 83 370 318 51 51 chr3 211443251 211443446 -6593712 + L3 LINE CR1 1376 1570 -7 272 297 27 45 chr3 211444172 211444283 -6592875 - MIR3 SINE MIR -45 163 55 1504 85 10 5 chr3 211444528 211444727 -6592431 - AluSp SINE Alu -19 294 95 208 296 40 112 chr3 211445607 211445732 -6591426 - L2 LINE L2 -31 3241 3126 22 35 6 0 chr3 211445904 211445977 -6591181 + AT_rich Low_complexity Low_complexity 1 36 0 2779 7 0 0 chr3 211446242 211446543 -6590615 - AluYa5 SINE Alu -10 301 1 283 304 86 27 chr3 211447652 211447847 -6589311 + MIR3 SINE MIR 31 222 -40 298 263 247 16 chr3 211447947 211448137 -6589021 + L2 LINE L2 3079 3312 -1 30 0 0 0 chr3 211449662 211449692 -6587466 + AT_rich Low_complexity Low_complexity 1 30 0 306 280 0 19 chr3 211449734 211449841 -6587317 + A-rich Low_complexity Low_complexity 5 109 0 1078 262 113 51 chr3 211449964 211450287 -6586871 - L1MD2 LINE L1 -1 6358 5988 2158 109 7 3 chr3 211450287 211450580 -6586578 - AluSx SINE Alu -18 294 1 1078 262 113 51 chr3 211450580 211450787 -6586371 - L1MD2 LINE L1 -371 5988 5795 659 256 17 6 chr3 211451255 211451427 -6585731 - MER5B DNA MER1_type -4 174 1 940 185 6 6 chr3 211451767 211451945 -6585213 + MER5B DNA MER1_type 1 178 0 202 274 17 120 chr3 211452233 211452276 -6584882 - MIR SINE MIR -121 141 95 561 228 93 37 chr3 211452276 211452438 -6584720 + MER96 DNA MER1_type 5 175 0 202 274 17 120 chr3 211452438 211452511 -6584647 - MIR SINE MIR -167 95 37 1921 206 57 29 chr3 211452592 211453082 -6584076 + MLT1D LTR MaLR 1 504 -1 479 335 124 19 chr3 211454155 211454421 -6582737 + L3 LINE CR1 1261 1554 -23 1128 92 0 0 chr3 211454584 211454726 -6582432 + AluSq/x SINE Alu 1 142 -171 2255 110 0 7 chr3 211454729 211455028 -6582130 + AluSx SINE Alu 1 297 -15 553 263 164 0 chr3 211456024 211456176 -6580982 + MER5A DNA MER1_type 12 188 -1 385 318 37 30 chr3 211456292 211456487 -6580671 - MIR SINE MIR -50 212 19 1935 127 7 3 chr3 211457139 211457423 -6579735 - AluJb SINE Alu -22 290 6 526 258 0 30 chr3 211458760 211458892 -6578266 - MIR SINE MIR -87 175 48 252 254 0 0 chr3 211459311 211459366 -6577792 + Tigger2 DNA MER2_type 1 55 -2663 2369 56 0 40 chr3 211459374 211459696 -6577462 - AluY SINE Alu -1 310 2 222 299 76 35 chr3 211459848 211459992 -6577166 - MIR3 SINE MIR -1 207 58 2035 69 0 0 chr3 211460223 211460469 -6576689 - AluSc SINE Alu -63 246 1 3061 187 44 11 chr3 211460475 211460581 -6576577 + Tigger2 DNA MER2_type 59 160 -2558 1841 38 5 0 chr3 211460581 211460834 -6576324 + AluSp SINE Alu 70 323 0 3061 187 44 11 chr3 211460834 211461389 -6575769 + Tigger2 DNA MER2_type 160 744 -1974 1420 161 8 0 chr3 211461450 211461699 -6575459 + Tigger2 DNA MER2_type 2458 2708 -10 4129 54 4 2 chr3 211461844 211462366 -6574792 - L1PA7 LINE L1 -6 6148 5626 598 281 130 77 chr3 211462525 211463031 -6574127 - L1 LINE L1 -1763 4383 3851 302 206 8 153 chr3 211463738 211463869 -6573289 - MIR3 SINE MIR -6 202 91 270 0 0 0 chr3 211465482 211465512 -6571646 + (CA)n Simple_repeat Simple_repeat 2 31 0 535 190 123 34 chr3 211465521 211465700 -6571458 - MIR SINE MIR -2 260 66 2339 95 0 0 chr3 211466890 211467185 -6569973 - AluSq SINE Alu -18 295 1 324 159 32 0 chr3 211467195 211467258 -6569900 - L1MC4 LINE L1 0 8042 7978 571 266 111 15 chr3 211467326 211467484 -6569674 + L1ME4a LINE L1 5685 5827 -294 1770 172 30 43 chr3 211467484 211467707 -6569451 - MLT1B LTR MaLR 0 390 173 2371 100 0 0 chr3 211467707 211468006 -6569152 - AluSg SINE Alu -7 303 5 1770 172 30 43 chr3 211468006 211468177 -6568981 - MLT1B LTR MaLR -217 173 1 571 266 111 15 chr3 211468177 211468416 -6568742 + L1ME4a LINE L1 5827 6120 -1 296 342 0 25 chr3 211468462 211468582 -6568576 - MIR SINE MIR -56 206 90 1955 169 0 3 chr3 211468666 211468968 -6568190 + AluJb SINE Alu 3 303 -9 22 0 0 0 chr3 211469133 211469155 -6568003 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 211469202 211469223 -6567935 + AT_rich Low_complexity Low_complexity 1 21 0 3004 114 96 0 chr3 211469228 211469709 -6567449 + L1PA13 LINE L1 5637 6163 0 2247 93 4 0 chr3 211471044 211471324 -6565834 - AluSq SINE Alu -32 281 1 318 26 0 0 chr3 211471336 211471375 -6565783 + (CA)n Simple_repeat Simple_repeat 2 40 0 252 59 0 0 chr3 211471375 211471409 -6565749 + (GA)n Simple_repeat Simple_repeat 1 34 0 1908 149 71 32 chr3 211471478 211472015 -6565143 + MLT2A2 LTR ERVL 1 554 0 191 245 94 0 chr3 211472035 211472088 -6565070 + MIR SINE MIR 83 140 -68 665 213 81 38 chr3 211472765 211472925 -6564233 - FAM SINE Alu -8 167 1 258 214 0 54 chr3 211472945 211473001 -6564157 - L3 LINE CR1 -9 1568 1516 232 302 0 0 chr3 211473049 211473112 -6564046 - MER5A DNA MER1_type -40 149 87 1128 125 0 0 chr3 211473116 211473268 -6563890 - AluSc SINE Alu -12 297 146 1175 103 0 0 chr3 211473452 211473597 -6563561 - AluSg SINE Alu -165 145 1 435 331 0 0 chr3 211473708 211473829 -6563329 - MIR SINE MIR -58 150 30 187 167 0 0 chr3 211473926 211473956 -6563202 + L3 LINE CR1 1406 1435 -142 289 352 78 37 chr3 211474192 211474462 -6562696 + L2 LINE L2 2568 2848 -466 2245 104 0 0 chr3 211474517 211474806 -6562352 - AluSg SINE Alu -21 289 1 543 339 26 10 chr3 211475344 211475536 -6561622 - MIR SINE MIR -32 230 36 765 281 67 45 chr3 211475831 211476233 -6560925 - LTR16A1 LTR ERVL 0 457 43 195 69 0 0 chr3 211476233 211476262 -6560896 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 765 281 67 45 chr3 211476262 211476304 -6560854 - LTR16A1 LTR ERVL -414 43 3 22 35 0 0 chr3 211477216 211477245 -6559913 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr3 211477623 211477662 -6559496 + AT_rich Low_complexity Low_complexity 1 39 0 406 281 98 54 chr3 211478978 211479202 -6557956 + MIR SINE MIR 29 262 0 1189 86 0 25 chr3 211479502 211479690 -6557468 + AluSg/x SINE Alu 124 307 0 23 86 0 0 chr3 211480332 211480390 -6556768 + AT_rich Low_complexity Low_complexity 1 58 0 1603 185 7 30 chr3 211480901 211481204 -6555954 + AluSx SINE Alu 1 296 -16 1061 147 15 66 chr3 211482879 211483076 -6554082 - AluJo SINE Alu -18 294 108 1865 169 0 10 chr3 211483273 211483580 -6553578 + AluJb SINE Alu 1 304 -8 795 198 54 0 chr3 211483980 211484147 -6553011 - MER97a DNA MER1_type? -716 178 3 333 0 0 0 chr3 211484277 211484314 -6552844 + (CA)n Simple_repeat Simple_repeat 2 38 0 372 158 0 0 chr3 211484314 211484390 -6552768 + GA-rich Low_complexity Low_complexity 1 76 0 187 316 66 13 chr3 211485206 211485282 -6551876 - L2 LINE L2 0 3272 3193 219 279 85 70 chr3 211485541 211485670 -6551488 + L2 LINE L2 3138 3268 -4 228 310 28 83 chr3 211486736 211486881 -6550277 + L2 LINE L2 3168 3304 -9 278 340 82 32 chr3 211487378 211487693 -6549465 - MER102b DNA MER1_type 0 341 11 2324 65 0 0 chr3 211488034 211488348 -6548810 - AluSc SINE Alu 0 314 1 213 65 0 0 chr3 211488643 211488674 -6548484 + (CA)n Simple_repeat Simple_repeat 2 32 0 201 136 17 51 chr3 211489856 211489915 -6547243 + GA-rich Low_complexity Low_complexity 4 60 0 1629 155 38 48 chr3 211490107 211490398 -6546760 + AluJo SINE Alu 1 288 -24 308 357 43 22 chr3 211490916 211491101 -6546057 - MER5A DNA MER1_type 0 189 1 181 0 69 0 chr3 211493452 211493481 -6543677 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 3068 28 0 4 chr3 211494113 211494555 -6542603 - L1P1 LINE L1 -714 5441 5001 * 32211 39 31 2 chr3 211494554 211498739 -6538419 - L1P1 LINE L1 -1825 4321 12 29344 66 0 6 chr3 211498936 211503819 -6533339 - L1PA6 LINE L1 -1 6153 1297 2087 118 21 3 chr3 211503819 211504106 -6533052 - AluSq SINE Alu -21 292 1 3786 200 69 3 chr3 211504169 211505338 -6531820 - L1MB5 LINE L1 -2 6172 4919 247 269 131 8 chr3 211506230 211506360 -6530798 + MLT1J LTR MaLR 1 146 -365 3408 106 3 60 chr3 211506433 211506603 -6530555 + L1MA3 LINE L1 2536 2714 -4851 1851 167 0 17 chr3 211506603 211506897 -6530261 + AluJb SINE Alu 1 289 -23 3408 106 3 60 chr3 211506897 211507348 -6529810 + L1MA3 LINE L1 2714 3122 -4443 14490 159 24 19 chr3 211507362 211507608 -6529550 + L1MA3 LINE L1 3091 3334 -4390 1444 160 37 68 chr3 211507608 211507946 -6529212 - AluSx SINE Alu 0 329 1 14490 159 24 19 chr3 211507946 211509080 -6528078 + L1MA3 LINE L1 3334 4461 -3263 2284 122 0 0 chr3 211509080 211509391 -6527767 + AluY SINE Alu 1 311 0 14490 159 24 19 chr3 211509391 211512612 -6524546 + L1MA3 LINE L1 4461 7724 0 547 254 125 59 chr3 211512622 211512925 -6524233 + MLT1J1 LTR MaLR 96 418 -28 1036 152 5 78 chr3 211512947 211513010 -6524148 - MER5A DNA MER1_type 0 189 123 2356 97 0 3 chr3 211513010 211513320 -6523838 + AluSc SINE Alu 1 309 0 1036 152 5 78 chr3 211513320 211513460 -6523698 - MER5A DNA MER1_type -66 123 1 467 339 126 37 chr3 211513548 211514095 -6523063 - L2 LINE L2 -8 3305 2708 43 35 0 0 chr3 211514140 211514197 -6522961 + AT_rich Low_complexity Low_complexity 1 57 0 2343 72 7 0 chr3 211514209 211514502 -6522656 + AluSp SINE Alu 5 299 -14 32 40 0 53 chr3 211514505 211514556 -6522602 + AT_rich Low_complexity Low_complexity 1 48 -24 958 167 0 11 chr3 211514556 211514742 -6522416 + L1MA3 LINE L1 6119 6302 -3 32 40 0 53 chr3 211514742 211514766 -6522392 + AT_rich Low_complexity Low_complexity 48 72 0 325 336 80 13 chr3 211514780 211514986 -6522172 - L1M4 LINE L1 -858 5288 5064 1539 114 27 0 chr3 211514986 211515206 -6521952 - AluSg/x SINE Alu -1 309 84 325 336 80 13 chr3 211515206 211515225 -6521933 - L1M4 LINE L1 -1082 5064 5048 775 204 87 0 chr3 211516172 211516378 -6520780 - L1MB8 LINE L1 -281 5897 5674 1462 45 6 0 chr3 211516637 211516815 -6520343 - L1PA5 LINE L1 -4 6150 5972 2044 124 31 0 chr3 211517994 211518284 -6518874 + AluSg SINE Alu 1 299 -11 606 164 55 18 chr3 211518525 211518635 -6518523 + MER81 DNA DNA 1 114 0 2941 143 39 19 chr3 211518874 211519252 -6517906 - L1MB2 LINE L1 -1 6170 5776 318 106 0 0 chr3 211519252 211519299 -6517859 + (CA)n Simple_repeat Simple_repeat 1 47 0 2941 143 39 19 chr3 211519299 211519459 -6517699 - L1MB2 LINE L1 -395 5776 5621 296 312 54 0 chr3 211519524 211519617 -6517541 - MER5A DNA MER1_type -84 105 8 527 288 37 25 chr3 211519647 211519810 -6517348 + MIR3 SINE MIR 34 198 -10 378 278 124 41 chr3 211520227 211520421 -6516737 + MER63A DNA MER1_type 1 210 0 421 295 43 14 chr3 211520502 211520641 -6516517 + MER5B DNA MER1_type 1 143 -35 517 133 0 0 chr3 211520643 211520733 -6516425 + L1MA3 LINE L1 3500 3589 -3976 * 3431 152 27 46 chr3 211520729 211521442 -6515716 + L1MA3 LINE L1 5048 5746 -1819 6220 137 14 30 chr3 211521563 211522538 -6514620 + L1MA3 LINE L1 6282 7228 -496 2213 102 0 0 chr3 211522538 211522822 -6514336 + AluSx SINE Alu 1 284 -28 6220 137 14 30 chr3 211522822 211523312 -6513846 + L1MA3 LINE L1 7228 7724 0 612 233 20 0 chr3 211523319 211523469 -6513689 + L1ME2 LINE L1 5773 5925 -239 540 243 90 35 chr3 211523576 211523758 -6513400 - L1ME2 LINE L1 -142 6022 5821 1591 168 16 48 chr3 211523758 211524073 -6513085 - AluJb SINE Alu -7 305 1 540 243 90 35 chr3 211524073 211524145 -6513013 - L1ME2 LINE L1 -343 5821 5754 * 709 282 96 14 chr3 211524142 211524433 -6512725 - L1MEc LINE L1 -5940 456 142 270 95 0 0 chr3 211524458 211524500 -6512658 + (TC)n Simple_repeat Simple_repeat 2 43 0 558 294 6 28 chr3 211524862 211525039 -6512119 + MIR3 SINE MIR 30 202 -6 195 283 204 9 chr3 211526417 211526530 -6510628 - MIR SINE MIR -98 164 30 429 232 127 35 chr3 211529336 211529478 -6507680 + MER20 DNA MER1_type 47 201 -18 2391 131 8 0 chr3 211529667 211530033 -6507125 - L1PA13 LINE L1 -8 6155 5787 1710 141 69 17 chr3 211530033 211530380 -6506778 + THE1C LTR MaLR 2 366 -9 665 112 0 0 chr3 211530398 211530496 -6506662 + THE1C LTR MaLR 278 375 0 10573 108 12 34 chr3 211530496 211532112 -6505046 + THE1C-int LTR MaLR 1 1580 0 1926 143 43 32 chr3 211532112 211532483 -6504675 + THE1C LTR MaLR 1 375 0 16835 187 21 12 chr3 211532483 211533859 -6503299 - L1PA13 LINE L1 -371 5792 4431 183 42 0 0 chr3 211533859 211533883 -6503275 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 16835 187 21 12 chr3 211533883 211536632 -6500526 - L1PA13 LINE L1 -1732 4431 1615 522 303 78 47 chr3 211536762 211537082 -6500076 - MLT1I LTR MaLR -65 344 15 280 309 65 4 chr3 211537302 211537532 -6499626 - L1ME2 LINE L1 -581 5581 5338 235 158 18 18 chr3 211537589 211537646 -6499512 - L1MEd LINE L1 -5084 1035 979 1980 124 11 14 chr3 211537716 211538026 -6499132 + AluY SINE Alu 1 309 0 573 340 128 40 chr3 211538149 211538679 -6498479 - L1MEd LINE L1 -5363 756 180 452 207 23 0 chr3 211538681 211538768 -6498390 + MER92C LTR ERV1 1 89 -465 401 149 0 0 chr3 211538962 211539029 -6498129 + MER92C LTR ERV1 484 550 -4 3887 136 29 79 chr3 211539465 211539693 -6497465 - L1MA4 LINE L1 -6 6294 6056 1920 150 0 32 chr3 211539693 211540006 -6497152 + AluSx SINE Alu 1 303 -9 3887 136 29 79 chr3 211540006 211540652 -6496506 - L1MA4 LINE L1 -244 6056 5464 385 177 21 21 chr3 211540659 211540755 -6496403 + MER31-int LTR ERV1 1046 1141 -3795 525 247 22 26 chr3 211541263 211541490 -6495668 + MER31-int LTR ERV1 1686 1911 -3025 1172 256 38 58 chr3 211541733 211542342 -6494816 + MER31-int LTR ERV1 2470 3066 -1870 742 255 51 80 chr3 211542898 211543271 -6493887 + MER31-int LTR ERV1 3171 3532 -1404 417 335 75 21 chr3 211543433 211543672 -6493486 + L1 LINE L1 3999 4250 -1896 2942 59 3 3 chr3 211543947 211544337 -6492821 + L1PA7 LINE L1 5626 6015 -139 1195 235 18 61 chr3 211544575 211544966 -6492192 - MLT1A2 LTR MaLR 0 374 1 312 276 0 23 chr3 211545654 211545741 -6491417 + MIR SINE MIR 50 134 -128 1349 102 27 0 chr3 211546435 211546707 -6490451 + L1PB1 LINE L1 5205 5482 -669 3918 108 0 20 chr3 211546709 211547253 -6489905 + L1PB1 LINE L1 5563 6096 -55 2250 121 0 0 chr3 211547253 211547550 -6489608 + AluSc SINE Alu 1 297 -12 3918 108 0 20 chr3 211547550 211547598 -6489560 + L1PB1 LINE L1 6096 6143 -8 23 33 0 0 chr3 211547598 211547628 -6489530 + AT_rich Low_complexity Low_complexity 1 30 0 201 143 0 0 chr3 211547657 211547692 -6489466 + (CA)n Simple_repeat Simple_repeat 2 36 0 4248 168 19 6 chr3 211547697 211549128 -6488030 + L1PA16 LINE L1 4383 5833 -333 6928 195 7 8 chr3 211549285 211550862 -6486296 - L1 LINE L1 -1116 5030 3455 359 335 18 28 chr3 211550963 211551208 -6485950 + CT-rich Low_complexity Low_complexity 1 242 0 211 368 19 9 chr3 211551317 211551423 -6485735 + CT-rich Low_complexity Low_complexity 2 108 0 30 0 0 0 chr3 211551703 211551733 -6485425 + AT_rich Low_complexity Low_complexity 1 30 0 2376 49 0 11 chr3 211553433 211553745 -6483413 + AluY SINE Alu 1 309 0 260 308 49 42 chr3 211553837 211553980 -6483178 - L1 LINE L1 -1089 5057 4914 1035 132 30 0 chr3 211554051 211554218 -6482940 - L1PA16 LINE L1 -9 6157 5986 1707 29 0 0 chr3 211554686 211554892 -6482266 - L1P2 LINE L1 -516 5638 5433 * 4758 58 41 1 chr3 211554891 211555619 -6481539 + L1P LINE L1 4297 5053 -1093 327 104 0 0 chr3 211555928 211555976 -6481182 + (TG)n Simple_repeat Simple_repeat 1 48 0 1119 122 33 19 chr3 211555980 211556193 -6480965 + L1MB3 LINE L1 5796 6011 -172 552 269 12 12 chr3 211556196 211556367 -6480791 + CT-rich Low_complexity Low_complexity 1 171 0 332 311 6 22 chr3 211556385 211556565 -6480593 + C-rich Low_complexity Low_complexity 3 179 0 214 283 57 0 chr3 211556565 211556618 -6480540 + polypyrimidine Low_complexity Low_complexity 5 60 0 329 309 13 7 chr3 211556620 211556772 -6480386 + CT-rich Low_complexity Low_complexity 4 156 0 254 306 0 16 chr3 211556779 211556841 -6480317 + C-rich Low_complexity Low_complexity 4 64 0 480 236 11 33 chr3 211556841 211557023 -6480135 + CT-rich Low_complexity Low_complexity 2 179 0 397 253 93 88 chr3 211757146 211757340 -6279818 + L1M4 LINE L1 3692 3886 -2260 30 0 0 0 chr3 211757371 211757401 -6279757 + AT_rich Low_complexity Low_complexity 1 30 0 289 175 0 16 chr3 211758647 211758710 -6278448 - MER58 DNA MER1_type -1 2419 2358 468 214 0 68 chr3 211758776 211758815 -6278343 - MER58 DNA MER1_type -105 110 70 2347 87 3 0 chr3 211758815 211759114 -6278044 + AluSx SINE Alu 1 300 -12 468 214 0 68 chr3 211759114 211759191 -6277967 - MER58 DNA MER1_type -145 70 2 287 358 64 0 chr3 211759226 211759399 -6277759 + MER115 DNA AcHobo 83 266 -427 692 258 24 94 chr3 211759423 211759541 -6277617 + MER115 DNA AcHobo 417 542 -151 1687 179 3 10 chr3 211759541 211759842 -6277316 + AluJb SINE Alu 1 299 -13 692 258 24 94 chr3 211759842 211760021 -6277137 + MER115 DNA AcHobo 542 693 0 1023 134 19 0 chr3 211760459 211760641 -6276517 + AluSg/x SINE Alu 132 316 0 247 333 59 0 chr3 211760645 211760798 -6276360 - Charlie8 DNA MER1_type -2234 183 22 827 203 43 29 chr3 211760837 211761044 -6276114 + MLT2B1 LTR ERVL 3 212 -308 2278 144 31 70 chr3 211761046 211761491 -6275667 + MSTA LTR MaLR 1 428 0 5992 176 27 9 chr3 211761491 211762631 -6274527 + MSTA-int LTR MaLR 1 1161 -490 2015 144 6 18 chr3 211762652 211762992 -6274166 - MER4E LTR ERV1 -19 760 425 320 43 22 0 chr3 211762994 211763040 -6274118 + (TG)n Simple_repeat Simple_repeat 2 48 0 290 316 92 40 chr3 211763195 211763369 -6273789 + MIR3 SINE MIR 20 202 -6 1841 195 53 30 chr3 211764069 211764561 -6272597 - L1MB8 LINE L1 -2 6176 5674 1462 45 6 0 chr3 211764820 211764998 -6272160 - L1PA5 LINE L1 -4 6150 5972 2044 124 31 0 chr3 211766177 211766467 -6270691 + AluSg SINE Alu 1 299 -11 606 164 55 18 chr3 211766708 211766818 -6270340 + MER81 DNA DNA 1 114 0 2941 143 39 19 chr3 211767057 211767435 -6269723 - L1MB2 LINE L1 -1 6170 5776 318 106 0 0 chr3 211767435 211767482 -6269676 + (CA)n Simple_repeat Simple_repeat 1 47 0 2941 143 39 19 chr3 211767482 211767642 -6269516 - L1MB2 LINE L1 -395 5776 5621 296 312 54 0 chr3 211767707 211767800 -6269358 - MER5A DNA MER1_type -84 105 8 527 288 37 25 chr3 211767830 211767993 -6269165 + MIR3 SINE MIR 34 198 -10 378 278 124 41 chr3 211768410 211768604 -6268554 + MER63A DNA MER1_type 1 210 0 447 300 36 14 chr3 211768685 211768825 -6268333 + MER5B DNA MER1_type 1 143 -35 517 133 0 0 chr3 211768827 211768917 -6268241 + L1MA3 LINE L1 3500 3589 -3976 * 8059 144 25 28 chr3 211768913 211771105 -6266053 + L1MA3 LINE L1 5048 7234 -490 2213 102 0 0 chr3 211771105 211771389 -6265769 + AluSx SINE Alu 1 284 -28 8059 144 25 28 chr3 211771389 211771879 -6265279 + L1MA3 LINE L1 7234 7724 0 612 233 20 0 chr3 211771886 211772036 -6265122 + L1ME2 LINE L1 5773 5925 -239 540 243 90 35 chr3 211772143 211772325 -6264833 - L1ME2 LINE L1 -142 6022 5821 1591 168 16 48 chr3 211772325 211772640 -6264518 - AluJb SINE Alu -7 305 1 540 243 90 35 chr3 211772640 211772712 -6264446 - L1ME2 LINE L1 -343 5821 5754 * 709 282 96 14 chr3 211772709 211773000 -6264158 - L1MEc LINE L1 -5940 456 142 270 95 0 0 chr3 211773025 211773067 -6264091 + (TC)n Simple_repeat Simple_repeat 2 43 0 558 294 6 28 chr3 211773429 211773606 -6263552 + MIR3 SINE MIR 30 202 -6 195 283 204 9 chr3 211774984 211775097 -6262061 - MIR SINE MIR -98 164 30 429 232 127 35 chr3 211777905 211778047 -6259111 + MER20 DNA MER1_type 47 201 -18 2391 131 8 0 chr3 211778236 211778602 -6258556 - L1PA13 LINE L1 -8 6155 5787 1710 141 69 17 chr3 211778602 211778949 -6258209 + THE1C LTR MaLR 2 366 -9 665 112 0 0 chr3 211778967 211779065 -6258093 + THE1C LTR MaLR 278 375 0 10318 111 14 34 chr3 211779065 211780676 -6256482 + THE1C-int LTR MaLR 1 1580 0 1926 143 43 32 chr3 211780676 211781047 -6256111 + THE1C LTR MaLR 1 375 0 16835 185 20 11 chr3 211781047 211782427 -6254731 - L1PA13 LINE L1 -371 5792 4426 183 42 0 0 chr3 211782427 211782451 -6254707 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 16835 185 20 11 chr3 211782451 211785200 -6251958 - L1PA13 LINE L1 -1737 4426 1615 522 303 78 47 chr3 211785330 211785650 -6251508 - MLT1I LTR MaLR -65 344 15 280 309 65 4 chr3 211785870 211786100 -6251058 - L1ME2 LINE L1 -581 5581 5338 235 158 18 18 chr3 211786157 211786214 -6250944 - L1MEd LINE L1 -5084 1035 979 1980 124 11 14 chr3 211786284 211786594 -6250564 + AluY SINE Alu 1 309 0 573 340 128 40 chr3 211786717 211787247 -6249911 - L1MEd LINE L1 -5363 756 180 452 207 23 0 chr3 211787249 211787336 -6249822 + MER92C LTR ERV1 1 89 -465 401 149 0 0 chr3 211787530 211787597 -6249561 + MER92C LTR ERV1 484 550 -4 3951 135 27 79 chr3 211788033 211788262 -6248896 - L1MA4 LINE L1 -6 6294 6055 1920 150 0 32 chr3 211788262 211788575 -6248583 + AluSx SINE Alu 1 303 -9 3951 135 27 79 chr3 211788575 211789221 -6247937 - L1MA4 LINE L1 -245 6055 5464 385 177 21 21 chr3 211789228 211789324 -6247834 + MER31-int LTR ERV1 1046 1141 -3795 539 250 18 26 chr3 211789832 211790060 -6247098 + MER31-int LTR ERV1 1686 1911 -3025 1172 256 38 58 chr3 211790304 211790913 -6246245 + MER31-int LTR ERV1 2470 3066 -1870 2717 246 45 65 chr3 211791469 211792570 -6244588 + MER31-int LTR ERV1 3171 4249 -687 421 216 121 61 chr3 211792571 211792802 -6244356 + LTR37A LTR ERV1 1 245 -181 3599 130 17 5 chr3 211793180 211793765 -6243393 - LTR49 LTR ERV1 -3 592 1 398 204 10 31 chr3 211794164 211794262 -6242896 + MER92C LTR ERV1 1 96 -458 1295 219 71 22 chr3 211794390 211794755 -6242403 + MSTD LTR MaLR 2 384 -12 332 115 16 0 chr3 211794848 211794909 -6242249 + MER92C LTR ERV1 491 552 -2 371 306 50 72 chr3 211794912 211795092 -6242066 - L1MEd LINE L1 -5937 182 7 646 168 27 129 chr3 211795865 211796162 -6240996 - LTR34 LTR ERV1 -235 461 140 311 238 48 19 chr3 211796250 211796355 -6240803 - MER4C LTR ERV1 -352 113 6 2064 138 97 0 chr3 211796563 211796903 -6240255 - MER83C LTR ERV1 0 373 1 1492 199 36 0 chr3 211797049 211797165 -6239993 + AluJb SINE Alu 1 111 -201 189 0 0 0 chr3 211797165 211797186 -6239972 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1492 199 36 0 chr3 211797186 211797350 -6239808 + AluJb SINE Alu 111 291 -21 3143 122 91 24 chr3 211797428 211798009 -6239149 + LTR29 LTR ERV1 1 620 -2 3648 150 44 29 chr3 211798153 211798853 -6238305 + MER50 LTR ERV1 1 711 -23 805 277 29 29 chr3 211798888 211799126 -6238032 - MIR SINE MIR -20 242 5 25 31 0 0 chr3 211799188 211799220 -6237938 + AT_rich Low_complexity Low_complexity 1 32 0 227 338 0 0 chr3 211799527 211799601 -6237557 - LTR28 LTR ERV1 -42 978 905 460 228 95 81 chr3 211799703 211799775 -6237383 - LTR1B LTR ERV1 -328 498 429 2344 111 0 0 chr3 211799775 211800081 -6237077 - AluSx SINE Alu -6 306 1 460 228 95 81 chr3 211800081 211800219 -6236939 - LTR1B LTR ERV1 -397 429 285 359 314 122 12 chr3 211800266 211800438 -6236720 - LTR1 LTR ERV1 -567 218 28 609 198 0 24 chr3 211800744 211800870 -6236288 + MER5C DNA MER1_type 2 124 -200 205 301 72 12 chr3 211801127 211801210 -6235948 + MIR SINE MIR 21 108 -100 1815 154 56 6 chr3 211801388 211801726 -6235432 - MLT1A1 LTR MaLR -1 364 10 498 300 67 14 chr3 211801952 211802162 -6234996 - Charlie8 DNA MER1_type -2185 232 12 546 224 14 10 chr3 211803732 211803873 -6233285 - MIR SINE MIR -64 144 28 355 296 31 0 chr3 211804811 211804909 -6232249 - HAL1 LINE L1 -590 1917 1817 197 321 0 0 chr3 211805029 211805082 -6232076 - L3 LINE CR1 -102 1475 1423 407 300 17 8 chr3 211806212 211806332 -6230826 - MER5B DNA MER1_type -1 177 57 577 176 0 0 chr3 211806332 211806434 -6230724 - AluJo SINE Alu -2 310 209 1008 147 19 0 chr3 211806434 211806591 -6230567 - AluJo SINE Alu -152 160 1 289 238 0 16 chr3 211806596 211806659 -6230499 + MER5B DNA MER1_type 117 178 0 2119 76 20 7 chr3 211807477 211807778 -6229380 - L1PA8 LINE L1 -2 6170 5866 297 301 58 0 chr3 211807878 211807981 -6229177 + MIR3 SINE MIR 95 203 -5 279 0 0 0 chr3 211808753 211808784 -6228374 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 522 296 116 66 chr3 211809455 211809997 -6227161 + L2 LINE L2 2729 3299 -14 284 315 43 43 chr3 211810127 211810289 -6226869 + MIR SINE MIR 56 217 -45 273 338 34 34 chr3 211810984 211811132 -6226026 + MIR SINE MIR 23 170 -92 184 364 45 23 chr3 211812785 211812917 -6224241 - MIR SINE MIR -119 143 9 452 282 102 19 chr3 211813739 211813955 -6223203 - MIR SINE MIR -26 236 3 284 257 0 0 chr3 211814718 211814792 -6222366 - LTR67 LTR ERVL -1 556 483 547 303 7 7 chr3 211814924 211815069 -6222089 - LTR67 LTR ERVL -299 258 114 506 294 52 63 chr3 211816013 211816360 -6220798 + HAL1 LINE L1 15 357 -2150 301 347 52 46 chr3 211816390 211816563 -6220595 + HAL1 LINE L1 420 593 -1914 339 285 38 48 chr3 211816798 211816984 -6220174 + HAL1 LINE L1 628 811 -1696 279 288 61 90 chr3 211817159 211817437 -6219721 - L2 LINE L2 0 3313 3044 495 298 8 0 chr3 211817438 211817562 -6219596 - L2 LINE L2 -1080 2234 2110 668 256 60 19 chr3 211817573 211817940 -6219218 + HAL1 LINE L1 981 1362 -1145 417 54 0 0 chr3 211817956 211818012 -6219146 + (CA)n Simple_repeat Simple_repeat 1 56 0 1281 256 105 25 chr3 211818043 211818681 -6218477 + HAL1 LINE L1 1475 2163 -344 201 163 0 0 chr3 211819302 211819351 -6217807 + GA-rich Low_complexity Low_complexity 2 50 0 323 244 44 103 chr3 211819353 211819572 -6217586 + HAL1 LINE L1 2225 2427 -80 2573 39 0 3 chr3 211819572 211819878 -6217280 + AluY SINE Alu 1 305 -6 323 244 44 103 chr3 211819878 211819929 -6217229 + HAL1 LINE L1 2427 2479 -28 1336 196 59 3 chr3 211819935 211820221 -6216937 + L1PB4 LINE L1 5847 6148 -8 1622 100 18 9 chr3 211820378 211820607 -6216551 - AluSg/x SINE Alu -17 295 65 184 245 0 108 chr3 211820860 211820962 -6216196 + L2 LINE L2 3126 3216 -97 201 39 0 0 chr3 211821014 211821040 -6216118 + (CA)n Simple_repeat Simple_repeat 1 26 0 1521 169 76 136 chr3 211821378 211821928 -6215230 + MLT2B1 LTR ERVL 4 520 0 234 294 0 0 chr3 211822185 211822236 -6214922 - L2 LINE L2 -17 3255 3205 257 217 14 14 chr3 211823516 211823585 -6213573 + (TA)n Simple_repeat Simple_repeat 1 69 0 198 191 0 0 chr3 211823625 211823667 -6213491 + GA-rich Low_complexity Low_complexity 1 42 0 2152 146 0 3 chr3 211823959 211824268 -6212890 + AluSx SINE Alu 1 308 -4 21 36 0 0 chr3 211824791 211824819 -6212339 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr3 211825065 211825102 -6212056 + AT_rich Low_complexity Low_complexity 1 37 0 383 285 64 47 chr3 211825231 211825403 -6211755 + MIR SINE MIR 49 223 -39 186 43 0 0 chr3 211825422 211825445 -6211713 + (CAT)n Simple_repeat Simple_repeat 2 24 0 1961 111 11 7 chr3 211825982 211826289 -6210869 + AluSx SINE Alu 1 308 0 589 196 27 9 chr3 211826478 211826590 -6210568 - MER81 DNA DNA 0 114 1 2457 201 35 26 chr3 211827723 211828230 -6208928 + MLT2B2 LTR ERVL 1 512 -3 1621 74 0 45 chr3 211828267 211828511 -6208647 + L1PA6 LINE L1 5922 6154 0 2323 135 62 48 chr3 211828544 211829089 -6208069 - L1MB3 LINE L1 -53 6130 5573 321 285 66 21 chr3 211829640 211829928 -6207230 - L1M4 LINE L1 -1316 4830 4530 1083 223 110 33 chr3 211830075 211830411 -6206747 + MLT1A1 LTR MaLR 4 365 0 320 305 69 44 chr3 211830994 211831197 -6205961 + L1MEd LINE L1 414 621 -5498 1270 106 65 130 chr3 211831789 211832150 -6205008 + THE1C LTR MaLR 8 431 -26 22 35 0 0 chr3 211833316 211833345 -6203813 + AT_rich Low_complexity Low_complexity 1 29 0 201 147 0 0 chr3 211834560 211834594 -6202564 + (CTG)n Simple_repeat Simple_repeat 2 35 0 225 121 0 0 chr3 211835934 211835967 -6201191 + THE1C LTR MaLR 396 428 0 225 121 0 0 chr3 211837474 211837507 -6199651 + U2 snRNA snRNA 1 33 -155 1866 139 62 59 chr3 211838440 211838827 -6198331 + MLT1B LTR MaLR 3 390 0 387 303 49 38 chr3 211838863 211839150 -6198008 + MLT1L LTR MaLR 1 290 -325 625 319 77 10 chr3 211839237 211839550 -6197608 - MLT1K LTR MaLR -250 338 5 404 329 92 44 chr3 211839585 211839880 -6197278 + L2 LINE L2 3004 3312 -1 2376 108 0 6 chr3 211839933 211840247 -6196911 + AluSx SINE Alu 1 312 0 5343 61 34 24 chr3 211841090 211841848 -6195310 + MER4E LTR ERV1 1 766 0 203 350 93 21 chr3 211842037 211842177 -6194981 - L2 LINE L2 0 3272 3123 546 86 0 12 chr3 211842177 211842258 -6194900 + MADE1 DNA Mariner 1 80 0 302 363 139 34 chr3 211842315 211842582 -6194576 + L2 LINE L2 2977 3271 -1 3020 145 8 8 chr3 211842796 211843299 -6193859 + L1PA16 LINE L1 5648 6150 -16 2011 84 0 0 chr3 211843299 211843550 -6193608 - AluSq SINE Alu -62 251 1 25 51 0 0 chr3 211844011 211844050 -6193108 + AT_rich Low_complexity Low_complexity 1 39 0 1947 103 4 18 chr3 211845361 211845642 -6191516 + AluSx SINE Alu 1 277 -35 207 0 0 0 chr3 211845657 211845680 -6191478 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2178 102 3 3 chr3 211848830 211849125 -6188033 + AluSc SINE Alu 1 295 -14 192 152 0 0 chr3 211849525 211849558 -6187600 + (TA)n Simple_repeat Simple_repeat 2 34 0 249 325 0 8 chr3 211850046 211850166 -6186992 + L1ME3 LINE L1 5050 5168 -978 4386 167 51 28 chr3 211850173 211851408 -6185750 + L1MB7 LINE L1 4906 6165 -19 421 315 108 72 chr3 211851411 211851783 -6185375 + L1MEd LINE L1 1348 1736 -4804 2358 92 13 0 chr3 211851783 211852088 -6185070 + AluSg SINE Alu 1 309 -1 421 315 108 72 chr3 211852088 211852133 -6185025 + L1MEd LINE L1 1736 1778 -4762 310 292 18 22 chr3 211852153 211852343 -6184815 + L1MEd LINE L1 1775 1987 -4575 587 262 143 24 chr3 211852760 211853012 -6184146 - MLT1H LTR MaLR -17 532 251 1132 197 32 5 chr3 211853050 211853268 -6183890 - MER58A DNA MER1_type 0 224 1 2307 116 0 0 chr3 211853428 211853731 -6183427 + AluSq SINE Alu 3 305 -8 423 301 64 26 chr3 211853977 211854319 -6182839 + L1ME3 LINE L1 5597 5951 -219 230 152 22 0 chr3 211854877 211854923 -6182235 - MER46A DNA MER2_type -84 152 106 * 391 95 48 0 chr3 211854900 211854963 -6182195 + Tigger4(Zombi) DNA MER2_type 2663 2728 -3 974 246 18 5 chr3 211855672 211855896 -6181262 + MIR SINE MIR 36 262 0 1804 197 48 39 chr3 211855994 211856329 -6180829 - Charlie1b DNA MER1_type -2239 522 179 1664 143 0 15 chr3 211856329 211856588 -6180570 + AluJo SINE Alu 35 289 -23 1804 197 48 39 chr3 211856588 211856769 -6180389 - Charlie1b DNA MER1_type -2582 179 1 625 345 70 6 chr3 211856861 211857174 -6179984 + L2 LINE L2 2926 3258 -55 904 313 155 28 chr3 211857174 211857931 -6179227 + L2 LINE L2 2462 3309 -4 36271 86 7 15 chr3 211858001 211863633 -6173525 + L1PA6 LINE L1 11 5594 -560 2501 66 0 0 chr3 211863633 211863935 -6173223 + AluY SINE Alu 1 302 -9 36271 86 7 15 chr3 211863935 211864198 -6172960 + L1PA6 LINE L1 5594 5857 -297 2092 74 37 3 chr3 211864300 211864599 -6172559 + L1PA6 LINE L1 5843 6151 -3 302 376 8 0 chr3 211865210 211865335 -6171823 + MIR3 SINE MIR 59 184 -24 32 26 0 0 chr3 211865554 211865593 -6171565 + AT_rich Low_complexity Low_complexity 1 39 0 184 296 65 83 chr3 211866305 211866413 -6170745 + L2 LINE L2 2990 3095 -177 755 220 48 24 chr3 211866954 211867163 -6169995 + L1ME3 LINE L1 5949 6162 0 348 147 27 13 chr3 211868093 211868168 -6168990 + L1MC4a LINE L1 6786 6861 -947 1813 230 113 12 chr3 211868266 211868844 -6168314 + L1MC4 LINE L1 7259 7894 -148 385 231 0 0 chr3 211870558 211870636 -6166522 + MER97b DNA MER1_type? 95 172 -881 257 283 17 64 chr3 211871655 211871888 -6165270 - L1MEc LINE L1 -5546 850 629 494 323 122 27 chr3 211872067 211872404 -6164754 - L1MEc LINE L1 -5945 451 83 29 0 0 0 chr3 211872767 211872796 -6164362 + AT_rich Low_complexity Low_complexity 1 29 0 310 343 9 0 chr3 211873460 211873568 -6163590 + MIR3 SINE MIR 86 194 -14 1803 176 56 25 chr3 211874774 211875303 -6161855 - MLT2A2 LTR ERVL 0 554 1 343 254 0 0 chr3 211875314 211875381 -6161777 + MIR SINE MIR 86 152 -110 469 241 62 0 chr3 211875527 211875639 -6161519 + L2 LINE L2 3190 3308 -5 23273 89 6 1 chr3 211875920 211880222 -6156936 - L1PA7 LINE L1 -4 6430 1581 2087 235 56 7 chr3 211882800 211883375 -6153783 - MER90 LTR ERV1 -11 603 1 672 249 109 71 chr3 211883443 211883892 -6153266 - LTR33 LTR ERVL -53 468 3 454 61 0 0 chr3 211884426 211884492 -6152666 - Alu SINE Alu -4 307 242 2102 101 7 0 chr3 211884592 211884868 -6152290 - AluY SINE Alu -28 283 6 463 193 42 132 chr3 211884883 211885096 -6152062 - MER74B LTR ERVL 0 622 429 236 208 38 0 chr3 211885097 211885139 -6152019 - MER74A LTR ERVL -279 279 236 1822 187 28 50 chr3 211885139 211885418 -6151740 + MLT2D LTR ERVL 1 284 -130 1697 130 51 97 chr3 211885418 211885811 -6151347 + THE1C LTR MaLR 1 375 0 1822 187 28 50 chr3 211885811 211885904 -6151254 + MLT2D LTR ERVL 284 365 -49 1857 155 80 0 chr3 211885904 211886240 -6150918 + MER47A DNA MER2_type 4 366 0 1822 187 28 50 chr3 211886240 211886289 -6150869 + MLT2D LTR ERVL 365 414 0 1059 226 24 8 chr3 211886289 211886526 -6150632 - MER74A LTR ERVL -317 241 1 700 280 74 45 chr3 211887116 211887519 -6149639 + MLT1J1 LTR MaLR 1 415 -31 465 283 54 16 chr3 211887550 211887734 -6149424 + LTR68 LTR ERV1 220 410 -330 334 320 30 69 chr3 211890135 211890338 -6146820 - MIR3 SINE MIR 0 208 14 2145 213 28 62 chr3 211890999 211891712 -6145446 - L1ME1 LINE L1 -5 6161 5473 331 247 11 11 chr3 211892540 211892629 -6144529 - MIR SINE MIR 0 262 174 679 227 28 0 chr3 211892798 211892939 -6144219 - MIR SINE MIR -109 153 9 714 294 27 34 chr3 211893306 211893420 -6143738 + MIR SINE MIR 2 115 -147 2190 237 30 6 chr3 211893420 211893927 -6143231 - LTR40a LTR ERVL 0 519 1 714 294 27 34 chr3 211893927 211894074 -6143084 + MIR SINE MIR 115 261 -1 1053 140 0 0 chr3 211894087 211894265 -6142893 - L1MB3 LINE L1 -7 6176 5999 577 225 50 19 chr3 211894299 211894459 -6142699 - MLT2A2 LTR ERVL -144 309 145 758 142 126 60 chr3 211894459 211894534 -6142624 - L1MB3 LINE L1 -201 5982 5913 2190 96 4 4 chr3 211894534 211894840 -6142318 - AluSc SINE Alu 0 306 1 758 142 126 60 chr3 211894840 211894946 -6142212 - L1MB3 LINE L1 -270 5913 5788 268 269 13 0 chr3 211894948 211895026 -6142132 + (TA)n Simple_repeat Simple_repeat 2 80 0 395 199 12 12 chr3 211895046 211895207 -6141951 + (TA)n Simple_repeat Simple_repeat 2 162 0 1387 214 7 3 chr3 211895223 211895531 -6141627 + L1MA6 LINE L1 4954 5262 -884 326 135 7 0 chr3 211895537 211895595 -6141563 - MLT2A2 LTR ERVL -8 445 394 420 378 0 0 chr3 211895598 211895778 -6141380 + (CATA)n Simple_repeat Simple_repeat 1 180 0 * 696 278 0 0 chr3 211895656 211895836 -6141322 + (TATG)n Simple_repeat Simple_repeat 1 180 0 1246 188 38 62 chr3 211895853 211896355 -6140803 - MLT2A2 LTR ERVL -44 508 1 4372 144 24 21 chr3 211896359 211897315 -6139843 + L1MA6 LINE L1 5264 6297 -3 214 178 0 0 chr3 211898157 211898202 -6138956 + T-rich Low_complexity Low_complexity 1 45 0 2565 123 7 14 chr3 211898602 211899018 -6138140 + L1PB1 LINE L1 5731 6143 -8 206 297 0 14 chr3 211899129 211899203 -6137955 + (CATA)n Simple_repeat Simple_repeat 2 74 0 180 273 23 0 chr3 211899337 211899381 -6137777 - L2 LINE L2 -18 3295 3251 3244 182 76 27 chr3 211899679 211900597 -6136561 - L1MB7 LINE L1 -9 6986 6009 5456 232 38 41 chr3 211900604 211902859 -6134299 - L1MB7 LINE L1 -2155 4802 2617 1883 157 0 3 chr3 211902996 211903322 -6133836 - AluSx SINE Alu 0 325 1 4099 275 68 22 chr3 211903428 211903670 -6133488 - L1MB7 LINE L1 -4765 2113 1884 2566 181 73 47 chr3 211903670 211904378 -6132780 + LTR8A LTR ERV1 1 727 0 4099 275 68 22 chr3 211904378 211905773 -6131385 - L1MB7 LINE L1 -4994 1884 2 1255 191 18 12 chr3 211906009 211906313 -6130845 + MER61C LTR ERV1 1 404 -30 458 303 74 79 chr3 211906611 211906915 -6130243 - MLT1J LTR MaLR -2 509 206 3886 159 78 18 chr3 211906915 211907694 -6129464 + LTR1B LTR ERV1 1 826 0 458 303 74 79 chr3 211907694 211907795 -6129363 - MLT1J LTR MaLR -305 206 106 358 325 45 0 chr3 211908111 211908265 -6128893 + MIR SINE MIR 102 262 0 248 250 218 40 chr3 211908907 211909031 -6128127 - MIR3 SINE MIR -62 146 1 590 292 99 5 chr3 211910899 211911101 -6126057 - MIR SINE MIR 0 262 42 21 36 0 0 chr3 211912312 211912340 -6124818 + AT_rich Low_complexity Low_complexity 1 28 0 891 122 91 142 chr3 211912693 211912968 -6124190 - L1MA6 LINE L1 0 6300 6044 1516 69 5 0 chr3 211913070 211913272 -6123886 - LTR3 LTR ERVK -229 203 1 1320 297 65 20 chr3 211913392 211913965 -6123193 - L2 LINE L2 -4 3309 2688 2153 119 7 0 chr3 211913965 211914258 -6122900 - AluSq SINE Alu -18 295 1 1320 297 65 20 chr3 211914258 211914473 -6122685 - L2 LINE L2 -625 2688 2484 401 192 19 39 chr3 211914486 211914590 -6122568 + MLT1J LTR MaLR 402 503 -8 198 0 0 0 chr3 211914787 211914809 -6122349 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 403 185 118 7 chr3 211915057 211915192 -6121966 - MER3 DNA MER1_type 0 2624 2475 271 237 0 0 chr3 211915203 211915262 -6121896 - MER3 DNA MER1_type -111 98 40 2662 42 0 0 chr3 211916604 211916915 -6120243 - AluY SINE Alu 0 311 1 387 288 14 55 chr3 211916969 211917115 -6120043 - MIR SINE MIR -87 175 36 183 265 0 0 chr3 211917861 211917910 -6119248 + MIR SINE MIR 164 212 -50 206 146 24 0 chr3 211919446 211919487 -6117671 + G-rich Low_complexity Low_complexity 6 47 0 279 0 0 0 chr3 211919514 211919545 -6117613 + (TG)n Simple_repeat Simple_repeat 1 31 0 350 279 70 109 chr3 211919856 211919978 -6117180 - L1M2 LINE L1 -5920 929 804 216 0 0 0 chr3 211919978 211920002 -6117156 + (CGGG)n Simple_repeat Simple_repeat 3 26 0 350 279 70 109 chr3 211920002 211920263 -6116895 - L1M2 LINE L1 -6045 804 561 404 191 28 48 chr3 211920498 211920623 -6116535 - MIR3 SINE MIR -50 158 37 246 301 14 14 chr3 211920791 211920864 -6116294 - L2 LINE L2 0 3272 3200 1377 96 50 23 chr3 211920866 211921085 -6116073 - MER30 DNA MER1_type 0 230 6 575 269 0 28 chr3 211922500 211922641 -6114517 + MIR SINE MIR 20 156 -106 2658 168 22 71 chr3 211922655 211923333 -6113825 - L1MD1 LINE L1 -170 6072 5428 * 4594 173 40 14 chr3 211923331 211923419 -6113739 - L1MA7 LINE L1 0 6877 6793 2550 129 11 60 chr3 211923419 211923869 -6113289 - MSTC LTR MaLR 0 428 1 4594 173 40 14 chr3 211923869 211924836 -6112322 - L1MA7 LINE L1 -84 6793 5795 4194 177 27 2 chr3 211924853 211925207 -6111951 - L1MA7 LINE L1 -1926 4806 4462 1624 178 18 7 chr3 211925207 211925521 -6111637 - AluJb SINE Alu 0 317 1 4194 177 27 2 chr3 211925521 211926041 -6111117 - L1MA7 LINE L1 -2270 4462 3909 2598 122 149 0 chr3 211926047 211926483 -6110675 + MER61D LTR ERV1 1 501 0 4214 242 48 26 chr3 211926497 211928229 -6108929 - L1MA7 LINE L1 -3202 3530 2030 895 215 45 0 chr3 211928229 211928429 -6108729 + MER6B DNA MER2_type 1 209 -1 4214 242 48 26 chr3 211928429 211929551 -6107607 - L1MA7 LINE L1 -4702 2030 935 280 311 11 22 chr3 211929579 211929669 -6107489 - L1MA7 LINE L1 -6287 366 278 260 262 20 6 chr3 211929816 211929903 -6107255 - L1M3de LINE L1 -5639 1014 278 253 288 15 15 chr3 211929941 211930007 -6107151 - L1M3de LINE L1 -6310 343 278 582 356 83 18 chr3 211930109 211930505 -6106653 - L1M3de LINE L1 -5638 1015 594 442 286 53 38 chr3 211930509 211930771 -6106387 - L1M3d LINE L1 -5621 270 5 1403 212 96 10 chr3 211930773 211930849 -6106309 - L1MC/D LINE L1 -801 5441 5373 2163 163 74 3 chr3 211930849 211931241 -6105917 - MSTB LTR MaLR -4 422 3 1403 212 96 10 chr3 211931241 211931661 -6105497 - L1MC/D LINE L1 -869 5373 4901 260 247 55 14 chr3 211931676 211931749 -6105409 + MIR3 SINE MIR 83 158 -50 200 189 38 38 chr3 211932657 211932710 -6104448 - L2 LINE L2 0 3313 3261 272 159 0 32 chr3 211932781 211932844 -6104314 + (TATG)n Simple_repeat Simple_repeat 3 63 0 322 264 0 22 chr3 211933054 211933145 -6104013 - L1MC4 LINE L1 -1340 6702 6614 285 98 0 0 chr3 211933155 211933196 -6103962 + (CA)n Simple_repeat Simple_repeat 2 42 0 1478 152 126 29 chr3 211934015 211934357 -6102801 - THE1C LTR MaLR 0 375 1 201 284 81 0 chr3 211936252 211936326 -6100832 - MIR SINE MIR -115 147 68 504 318 18 0 chr3 211937427 211937597 -6099561 + MER20B DNA MER1_type 45 217 -566 495 219 92 58 chr3 211937807 211938067 -6099091 + MER20B DNA MER1_type 514 782 -1 802 290 86 41 chr3 211938755 211939117 -6098041 - L2 LINE L2 -4 3309 2932 359 332 75 31 chr3 211939119 211939345 -6097813 + L1ME4a LINE L1 5321 5556 -565 638 259 36 5 chr3 211939355 211939548 -6097610 + L1ME4a LINE L1 5597 5795 -326 302 274 9 35 chr3 211939825 211939938 -6097220 - MLT1K LTR MaLR -316 272 163 442 293 0 0 chr3 211940085 211940252 -6096906 + L1 LINE L1 2716 2882 -3264 2076 157 33 32 chr3 211940261 211940810 -6096348 + MLT2A2 LTR ERVL 2 554 0 8528 220 26 20 chr3 211940810 211943650 -6093508 + L1P4 LINE L1 2892 5742 -424 367 222 8 26 chr3 211943654 211943771 -6093387 + L1ME4a LINE L1 5990 6104 -17 2026 127 17 0 chr3 211943791 211944082 -6093076 + AluSq SINE Alu 1 296 -17 278 333 0 0 chr3 211946040 211946121 -6091037 - MIR SINE MIR -75 133 53 28 29 0 0 chr3 211946724 211946759 -6090399 + AT_rich Low_complexity Low_complexity 1 35 0 778 131 0 137 chr3 211947061 211947200 -6089958 - L1M4 LINE L1 -738 5440 5344 2058 117 3 38 chr3 211947200 211947517 -6089641 - AluSg SINE Alu -4 306 1 778 131 0 137 chr3 211947517 211947610 -6089548 - L1M4 LINE L1 -834 5344 5240 3162 195 57 7 chr3 211947631 211948350 -6088808 + L1MB8 LINE L1 5408 6162 -16 1115 188 17 4 chr3 211948641 211948880 -6088278 + L1MA10 LINE L1 5998 6239 -95 616 196 30 0 chr3 211948880 211949013 -6088145 + L1MA10 LINE L1 6190 6326 -8 4691 189 43 9 chr3 211949722 211950817 -6086341 - L1MC1 LINE L1 -6 6327 5197 214 177 16 32 chr3 211951894 211951956 -6085202 + A-rich Low_complexity Low_complexity 1 61 0 324 0 0 0 chr3 211952746 211952782 -6084376 + (CA)n Simple_repeat Simple_repeat 2 37 0 2259 67 3 11 chr3 211954896 211955204 -6081954 + AluY SINE Alu 1 306 0 2163 118 3 0 chr3 211956791 211957080 -6080078 + AluSx SINE Alu 1 290 -22 23 0 0 0 chr3 211958699 211958722 -6078436 + AT_rich Low_complexity Low_complexity 1 23 0 202 231 223 100 chr3 211959720 211959850 -6077308 - MIR SINE MIR -64 198 53 1874 112 98 7 chr3 211960656 211960933 -6076225 - AluSq SINE Alu -11 302 1 212 327 191 0 chr3 211960957 211961067 -6076091 + L2 LINE L2 3140 3270 -2 213 310 71 67 chr3 211961322 211961577 -6075581 + L2 LINE L2 2857 3112 -160 253 344 11 11 chr3 211962632 211962725 -6074433 + L2 LINE L2 2766 2858 -456 243 0 0 0 chr3 211962806 211962833 -6074325 + (A)n Simple_repeat Simple_repeat 1 27 0 1987 111 20 14 chr3 211962883 211963180 -6073978 - AluSg SINE Alu -11 299 1 23 33 0 0 chr3 211964678 211964708 -6072450 + AT_rich Low_complexity Low_complexity 1 30 0 565 272 79 113 chr3 211964727 211964814 -6072344 + L1ME LINE L1 4330 4418 -1728 2333 84 0 7 chr3 211964814 211965113 -6072045 - AluSx SINE Alu -15 297 1 565 272 79 113 chr3 211965113 211965708 -6071450 + L1ME LINE L1 4418 4989 -1157 413 280 67 30 chr3 211965813 211966196 -6070962 + L1ME LINE L1 5270 5662 -459 293 222 0 16 chr3 211966345 211966408 -6070750 - MER94 DNA DNA -55 79 18 1928 138 3 17 chr3 211966444 211966761 -6070397 - AluJb SINE Alu 0 313 1 400 261 26 92 chr3 211966833 211967028 -6070130 - MIR SINE MIR -3 259 78 344 359 82 35 chr3 211967867 211968235 -6068923 + L2 LINE L2 2599 2983 -330 15476 121 14 8 chr3 211968747 211971149 -6066009 + Tigger1 DNA MER2_type 1 2418 0 272 333 206 0 chr3 211971233 211971359 -6065799 - MIR3 SINE MIR -41 167 16 186 219 0 0 chr3 211971690 211971722 -6065436 - MIR SINE MIR -83 125 94 1133 203 32 0 chr3 211971831 211972048 -6065110 + MER58A DNA MER1_type 1 224 0 308 246 14 0 chr3 211972959 211973028 -6064130 - L2 LINE L2 -2 3270 3201 340 298 40 32 chr3 211973538 211973662 -6063496 + MIR3 SINE MIR 83 207 -1 188 298 53 32 chr3 211973700 211973794 -6063364 - L2 LINE L2 -41 3231 3136 294 269 96 45 chr3 211973814 211973970 -6063188 + MER77 LTR ERV1 74 237 -368 23 0 0 0 chr3 211974472 211974495 -6062663 + AT_rich Low_complexity Low_complexity 1 23 0 422 326 8 16 chr3 211974585 211974714 -6062444 - MIR3 SINE MIR -66 142 15 215 367 83 28 chr3 211975006 211975115 -6062043 + L2 LINE L2 3127 3241 -31 1752 180 134 13 chr3 211976246 211976619 -6060539 - MER47B DNA MER2_type 0 418 1 3073 116 0 4 chr3 211977901 211978391 -6058767 - L1P LINE L1 -1161 4985 4498 1866 104 21 4 chr3 211978390 211978670 -6058488 + L1PA11 LINE L1 5870 6154 -20 * 253 327 19 75 chr3 211979376 211979483 -6057675 - MIR3 SINE MIR -102 106 6 222 197 16 33 chr3 211981925 211981986 -6055172 - MIR3 SINE MIR -146 62 3 187 289 0 0 chr3 211982480 211982525 -6054633 - MIR SINE MIR -60 148 104 294 287 0 0 chr3 211982955 211983042 -6054116 + (TTCA)n Simple_repeat Simple_repeat 4 90 0 247 348 93 25 chr3 211983045 211983163 -6053995 - L2 LINE L2 -1 3271 3146 295 267 59 40 chr3 211984144 211984245 -6052913 - L2 LINE L2 -7 3265 3163 2104 129 0 3 chr3 211985772 211986067 -6051091 + AluSg SINE Alu 1 294 -16 614 260 84 29 chr3 211987055 211987436 -6049722 + MLT1E LTR MaLR 6 410 -183 4772 107 7 0 chr3 211987462 211988160 -6048998 - L1PA14 LINE L1 -2 6159 5457 341 311 68 20 chr3 211988665 211988813 -6048345 + MIR3 SINE MIR 19 173 -35 302 281 258 0 chr3 211990835 211990963 -6046195 + MER91A DNA MER1_type 1 161 -35 411 249 88 55 chr3 211991131 211991312 -6045846 + MIR SINE MIR 4 190 -72 514 226 129 19 chr3 211991330 211991485 -6045673 - MER5B DNA MER1_type 0 178 7 345 255 80 45 chr3 211992777 211992977 -6044181 - HAL1 LINE L1 -6 2501 2295 533 189 0 51 chr3 211993348 211993489 -6043669 - L1ME2 LINE L1 -47 6264 6011 * 3826 157 38 48 chr3 211993488 211994413 -6042745 - L1MB1 LINE L1 -125 6064 5149 1096 179 0 0 chr3 211994411 211994623 -6042535 + L1MB1 LINE L1 4930 5141 -1005 * 786 323 72 34 chr3 211994646 211995089 -6042069 + L2 LINE L2 2853 3312 -1 263 273 91 0 chr3 211995673 211995761 -6041397 - MIR3 SINE MIR -14 194 99 21 0 0 0 chr3 211995998 211996019 -6041139 + AT_rich Low_complexity Low_complexity 1 21 0 355 242 59 91 chr3 211996311 211996497 -6040661 + MIR3 SINE MIR 2 181 -27 1510 203 82 2 chr3 211996922 211997263 -6039895 + MLT1A1 LTR MaLR 2 365 0 837 278 5 0 chr3 211997375 211997587 -6039571 + MER58A DNA MER1_type 12 224 0 263 266 118 6 chr3 211997727 211997882 -6039276 + MIR3 SINE MIR 31 202 -6 2240 111 0 0 chr3 211998943 211999240 -6037918 + AluSx SINE Alu 1 297 -15 311 331 56 88 chr3 211999628 211999933 -6037225 + L2 LINE L2 2978 3272 0 321 359 47 0 chr3 212000748 212000854 -6036304 + MIR SINE MIR 21 131 -77 738 191 6 13 chr3 212001873 212002030 -6035128 - MER3 DNA MER1_type -4 205 50 483 236 76 0 chr3 212002121 212002265 -6034893 - MER103 DNA DNA -8 158 4 276 362 40 36 chr3 212002704 212002928 -6034230 + L2 LINE L2 2731 2955 -359 200 333 0 0 chr3 212004002 212004056 -6033102 + L2 LINE L2 3002 3055 -217 21 0 0 0 chr3 212005178 212005199 -6031959 + AT_rich Low_complexity Low_complexity 1 21 0 204 318 0 64 chr3 212005661 212005771 -6031387 - MIR SINE MIR -65 143 41 203 319 0 14 chr3 212006470 212006542 -6030616 - MIR3 SINE MIR -5 203 133 2363 78 14 0 chr3 212006556 212006849 -6030309 + AluSc SINE Alu 1 297 -12 397 310 131 0 chr3 212008532 212008677 -6028481 + MIR3 SINE MIR 34 197 -11 327 267 18 121 chr3 212009090 212009255 -6027903 + L2 LINE L2 3122 3269 -3 713 300 51 8 chr3 212009346 212009583 -6027575 - MIR SINE MIR -15 247 1 2545 105 8 3 chr3 212009618 212009980 -6027178 + THE1B LTR MaLR 1 364 0 429 36 0 0 chr3 212010725 212010780 -6026378 + (CA)n Simple_repeat Simple_repeat 1 55 0 242 217 50 17 chr3 212010925 212010985 -6026173 - L3b LINE CR1 -3 1580 1519 29 28 0 0 chr3 212011717 212011753 -6025405 + AT_rich Low_complexity Low_complexity 1 36 0 201 147 0 0 chr3 212013057 212013091 -6024067 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 454 275 75 0 chr3 212013093 212013213 -6023945 - L2 LINE L2 -3 3269 3141 198 255 61 61 chr3 212013266 212013364 -6023794 + L2 LINE L2 2716 2813 -501 8423 42 16 0 chr3 212013823 212015653 -6021505 - L1PA5 LINE L1 0 6154 4307 2873 253 60 18 chr3 212015653 212016744 -6020414 - L1M4 LINE L1 -859 5287 4151 5372 156 12 36 chr3 212016759 212018442 -6018716 - L1MA6 LINE L1 -2 6298 4643 397 310 131 0 chr3 212019999 212020144 -6017014 + MIR3 SINE MIR 34 197 -11 327 267 18 121 chr3 212020557 212020722 -6016436 + L2 LINE L2 3122 3269 -3 713 300 51 8 chr3 212020813 212021050 -6016108 - MIR SINE MIR -15 247 1 2545 105 8 3 chr3 212021085 212021447 -6015711 + THE1B LTR MaLR 1 364 0 429 36 0 0 chr3 212022198 212022253 -6014905 + (CA)n Simple_repeat Simple_repeat 1 55 0 242 217 50 17 chr3 212022398 212022458 -6014700 - L3b LINE CR1 -3 1580 1519 29 28 0 0 chr3 212023190 212023226 -6013932 + AT_rich Low_complexity Low_complexity 1 36 0 201 147 0 0 chr3 212024530 212024564 -6012594 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 454 275 75 0 chr3 212024566 212024686 -6012472 - L2 LINE L2 -3 3269 3141 198 255 61 61 chr3 212024739 212024837 -6012321 + L2 LINE L2 2716 2813 -501 19263 45 3 1 chr3 212025296 212028491 -6008667 - L1PA5 LINE L1 0 6154 2954 338 347 41 0 chr3 212029319 212029440 -6007718 + L2 LINE L2 3188 3313 0 671 267 48 0 chr3 212029823 212030010 -6007148 + L2 LINE L2 3118 3313 0 511 212 240 7 chr3 212030021 212030167 -6006991 + MIR SINE MIR 53 232 -30 194 308 187 0 chr3 212031057 212031164 -6005994 + MIR SINE MIR 35 161 -101 187 265 84 24 chr3 212032532 212032615 -6004543 + MIR3 SINE MIR 114 201 -7 537 305 61 0 chr3 212033789 212033953 -6003205 + MER96 DNA MER1_type 2 175 0 203 234 0 43 chr3 212034233 212034280 -6002878 + MIR SINE MIR 85 129 -133 2426 107 39 48 chr3 212034407 212034845 -6002313 - MER57B LTR ERV1 0 434 1 306 277 64 11 chr3 212034892 212034986 -6002172 + MIR3 SINE MIR 85 183 -25 216 299 175 23 chr3 212035066 212035283 -6001875 + MIR SINE MIR 10 259 -3 229 399 33 27 chr3 212035988 212036171 -6000987 + MIR3 SINE MIR 14 197 -11 363 301 80 63 chr3 212036286 212036525 -6000633 - MIR SINE MIR -17 245 3 351 357 85 37 chr3 212036760 212037088 -6000070 + L2 LINE L2 2917 3260 -12 231 276 29 57 chr3 212038176 212038281 -5998877 + MIR SINE MIR 88 189 -73 504 224 0 9 chr3 212039050 212039166 -5997992 + MER3 DNA MER1_type 95 209 0 256 359 13 6 chr3 212039285 212039419 -5997739 - MIR SINE MIR -66 142 9 26 30 0 0 chr3 212039671 212039704 -5997454 + AT_rich Low_complexity Low_complexity 1 33 0 234 327 25 45 chr3 212040803 212041005 -5996153 + L1ME3A LINE L1 5959 6156 -14 2262 100 0 3 chr3 212041008 212041307 -5995851 - AluSq SINE Alu -15 298 1 278 237 43 21 chr3 212042027 212042120 -5995038 - MIR SINE MIR -109 153 59 221 299 0 46 chr3 212042102 212042189 -5994969 + MIR3 SINE MIR 6 88 -120 * 952 90 0 15 chr3 212042708 212042841 -5994317 + L1MA2 LINE L1 6165 6295 -9 346 233 0 6 chr3 212042933 212043015 -5994143 + MIR SINE MIR 71 151 -57 317 23 0 23 chr3 212043297 212043340 -5993818 + (TG)n Simple_repeat Simple_repeat 2 43 0 24 0 0 0 chr3 212045027 212045051 -5992107 + AT_rich Low_complexity Low_complexity 1 24 0 356 171 12 24 chr3 212045087 212045169 -5991989 - MLT1F1 LTR MaLR -30 537 457 2183 123 0 3 chr3 212045170 212045471 -5991687 + AluSx SINE Alu 1 300 -12 795 74 0 0 chr3 212045479 212045587 -5991571 - THE1C LTR MaLR -267 108 1 285 301 35 64 chr3 212045919 212046092 -5991066 + MIR SINE MIR 53 220 -42 310 257 98 38 chr3 212046301 212046484 -5990674 + L1ME LINE L1 5628 5821 -349 1520 133 11 114 chr3 212046626 212046993 -5990165 - MER44D DNA MER2_type -2 607 9 206 188 0 42 chr3 212047588 212047636 -5989522 - L2 LINE L2 0 3313 3268 217 319 43 11 chr3 212047698 212047792 -5989366 - MIR3 SINE MIR -4 204 108 755 203 25 25 chr3 212047854 212048017 -5989141 + MER5B DNA MER1_type 16 178 0 14047 173 26 11 chr3 212048327 212049704 -5987454 - L1MA6 LINE L1 -2 6298 4943 1975 140 0 0 chr3 212049704 212050033 -5987125 - AluSx SINE Alu 0 334 6 14047 173 26 11 chr3 212050033 212052678 -5984480 - L1MA6 LINE L1 -1357 4943 2215 621 145 11 4 chr3 212052682 212052798 -5984360 - LTR9 LTR ERV1 -510 102 1 474 312 10 50 chr3 212053766 212053968 -5983190 - MIR SINE MIR -49 213 20 280 271 93 17 chr3 212054182 212054300 -5982858 + MIR3 SINE MIR 82 208 0 481 262 170 0 chr3 212054335 212054476 -5982682 + MER5A DNA MER1_type 25 189 0 741 308 12 17 chr3 212056326 212056566 -5980592 + MIR SINE MIR 13 251 -11 675 324 127 55 chr3 212057183 212057962 -5979196 + L2 LINE L2 1068 1902 -1412 2149 134 0 0 chr3 212058263 212058568 -5978590 - AluSq SINE Alu -8 305 1 448 216 43 0 chr3 212058633 212058749 -5978409 - L1MC/D LINE L1 -2021 5787 5667 202 151 57 0 chr3 212058750 212058803 -5978355 + (CATATA)n Simple_repeat Simple_repeat 5 60 0 717 172 9 0 chr3 212058935 212059051 -5978107 + FLAM_C SINE Alu 1 117 -16 292 222 150 12 chr3 212059114 212059281 -5977877 - L1MC/D LINE L1 -2337 5471 5282 522 318 74 0 chr3 212059309 212059498 -5977660 + L2 LINE L2 1932 2134 -1180 326 281 83 35 chr3 212059540 212059768 -5977390 - L1MC4a LINE L1 -1767 6041 5803 735 320 76 38 chr3 212059790 212060212 -5976946 + L2 LINE L2 2219 2656 -658 1007 184 82 7 chr3 212060320 212060613 -5976545 - Charlie1b DNA MER1_type -4 519 205 1401 181 89 3 chr3 212060626 212060918 -5976240 - MLT1A1 LTR MaLR -48 317 1 779 266 14 9 chr3 212060986 212061204 -5975954 - Charlie1b DNA MER1_type -304 219 1 277 236 106 127 chr3 212061385 212061622 -5975536 + L2 LINE L2 2824 3055 -217 243 322 23 11 chr3 212061909 212061996 -5975162 + L3 LINE CR1 673 760 -817 317 173 0 0 chr3 212062193 212062291 -5974867 - Alu SINE Alu 0 327 230 2431 46 0 0 chr3 212062786 212063100 -5974058 + AluY SINE Alu 1 314 0 2525 236 59 31 chr3 212063107 212064657 -5972501 - L1ME1 LINE L1 -5 6230 4643 9830 178 7 6 chr3 212065305 212068399 -5968759 - L1PB1 LINE L1 -38 6113 3017 642 226 51 4 chr3 212068396 212068630 -5968528 - L1ME1 LINE L1 -1525 4690 4446 * 829 299 82 0 chr3 212068684 212069049 -5968109 - L1ME1 LINE L1 -5958 438 44 627 227 103 13 chr3 212069085 212069385 -5967773 - L1MC5 LINE L1 -26 7935 7609 4486 174 32 8 chr3 212069429 212070297 -5966861 + Tigger1 DNA MER2_type 1 889 -1529 245 196 82 55 chr3 212070309 212070461 -5966697 - L1MC5 LINE L1 -1130 6678 6554 530 294 105 75 chr3 212070463 212070998 -5966160 - L1MC4a LINE L1 -1211 6597 6047 23 108 0 0 chr3 212071014 212071107 -5966051 + AT_rich Low_complexity Low_complexity 1 93 0 1336 257 49 19 chr3 212071179 212071607 -5965551 - L1MC4a LINE L1 -1933 5875 5435 921 88 33 18 chr3 212071762 212071982 -5965176 + CT-rich Low_complexity Low_complexity 1 223 0 880 184 113 0 chr3 212071990 212072175 -5964983 - AluJo SINE Alu -2 310 105 2371 83 0 19 chr3 212072199 212072513 -5964645 - AluSc SINE Alu -1 308 1 3928 216 72 7 chr3 212072518 212073718 -5963440 - L1MC4 LINE L1 -207 7835 6480 3561 169 73 4 chr3 212073738 212074424 -5962734 - MER44D DNA MER2_type 0 605 1 222 62 0 0 chr3 212074844 212074876 -5962282 + (TG)n Simple_repeat Simple_repeat 1 32 0 1740 162 0 60 chr3 212074956 212075270 -5961888 - AluJo SINE Alu -17 295 1 295 247 194 0 chr3 212076240 212076333 -5960825 - MIR3 SINE MIR -17 191 81 917 330 56 63 chr3 212076849 212076906 -5960252 + L2 LINE L2 1878 1934 -1380 1893 156 0 20 chr3 212076906 212077207 -5959951 - AluSx SINE Alu -17 295 1 917 330 56 63 chr3 212077207 212077789 -5959369 + L2 LINE L2 1934 2519 -795 1842 166 7 0 chr3 212077789 212078084 -5959074 - AluSx SINE Alu -15 297 1 917 330 56 63 chr3 212078084 212078339 -5958819 + L2 LINE L2 2519 2769 -545 2143 109 3 3 chr3 212078339 212078654 -5958504 - AluSp SINE Alu 0 315 1 917 330 56 63 chr3 212078654 212078766 -5958392 + L2 LINE L2 2769 2880 -434 392 370 65 13 chr3 212078842 212078996 -5958162 + L2 LINE L2 3111 3272 0 1773 94 4 8 chr3 212079353 212079620 -5957538 - L1MA1 LINE L1 0 6302 6037 276 279 63 36 chr3 212079833 212079944 -5957214 - MIR SINE MIR -75 133 20 244 352 42 21 chr3 212080881 212081063 -5956095 + L1ME LINE L1 5490 5680 -441 2348 96 0 0 chr3 212081063 212081356 -5955802 + AluSq SINE Alu 1 293 -20 244 352 42 21 chr3 212081356 212081409 -5955749 + L1ME LINE L1 5680 5730 -391 182 143 0 0 chr3 212081829 212081857 -5955301 + MIR3 SINE MIR 170 197 -11 388 256 0 0 chr3 212081936 212082014 -5955144 + L2 LINE L2 3235 3312 -1 914 147 12 6 chr3 212082454 212082624 -5954534 - L1MB3 LINE L1 -2 6181 6011 233 323 140 18 chr3 212082881 212083045 -5954113 - MIR SINE MIR -3 259 76 216 0 0 0 chr3 212083103 212083127 -5954031 + (T)n Simple_repeat Simple_repeat 1 24 0 183 294 54 87 chr3 212083283 212083375 -5953783 - MIR SINE MIR -72 190 102 781 148 0 30 chr3 212083554 212083689 -5953469 - FLAM_C SINE Alu -2 131 1 2441 92 0 0 chr3 212084306 212084612 -5952546 - AluSq SINE Alu -7 306 1 255 288 72 27 chr3 212085172 212085283 -5951875 + L2 LINE L2 3156 3271 -1 297 100 0 0 chr3 212085428 212085478 -5951680 + (TTCC)n Simple_repeat Simple_repeat 1 50 0 201 242 32 0 chr3 212085501 212085563 -5951595 + A-rich Low_complexity Low_complexity 1 64 0 206 288 0 72 chr3 212086119 212086230 -5950928 + L3 LINE CR1 932 1034 -543 1900 144 0 35 chr3 212086813 212087125 -5950033 + AluSq SINE Alu 1 301 -12 23 0 0 0 chr3 212087220 212087243 -5949915 + AT_rich Low_complexity Low_complexity 1 23 0 479 246 36 22 chr3 212087601 212087739 -5949419 + MIR SINE MIR 106 245 -17 208 350 68 19 chr3 212088035 212088138 -5949020 + MIR3 SINE MIR 52 159 -49 270 356 96 9 chr3 212089581 212089811 -5947347 + L2 LINE L2 2235 2484 -830 5865 92 20 34 chr3 212090365 212091188 -5945970 - L1PA13 LINE L1 -4 6159 5334 2521 52 0 10 chr3 212091188 212091495 -5945663 - AluY SINE Alu -7 304 1 5865 92 20 34 chr3 212091495 212092003 -5945155 - L1PA13 LINE L1 -829 5334 4821 258 254 48 0 chr3 212092019 212092082 -5945076 + L2 LINE L2 3203 3268 -4 1031 223 114 32 chr3 212093228 212093700 -5943458 - MER20B DNA MER1_type -7 776 266 265 147 21 74 chr3 212093742 212093837 -5943321 + (TATAA)n Simple_repeat Simple_repeat 3 92 0 377 235 67 8 chr3 212093837 212093956 -5943202 - MER20B DNA MER1_type -534 249 124 198 0 0 0 chr3 212093962 212093984 -5943174 + (A)n Simple_repeat Simple_repeat 1 22 0 201 245 38 0 chr3 212094039 212094092 -5943066 - MIR SINE MIR -55 153 99 326 269 64 2 chr3 212095083 212095175 -5941983 - MIR SINE MIR -91 117 15 817 167 0 6 chr3 212095368 212095524 -5941634 - LTR32 LTR ERVL 0 471 317 1487 192 40 21 chr3 212095583 212095911 -5941247 - LTR32 LTR ERVL -123 348 15 209 331 16 41 chr3 212095913 212096034 -5941124 + L2 LINE L2 2978 3095 -177 217 314 29 29 chr3 212096216 212096286 -5940872 - L2 LINE L2 -14 3258 3189 2151 110 30 0 chr3 212096410 212096711 -5940447 - AluSp SINE Alu 0 313 4 203 286 18 125 chr3 212096826 212096994 -5940164 - L2 LINE L2 -366 2948 2799 1624 112 0 0 chr3 212097916 212098122 -5939036 + AluSq SINE Alu 1 206 -107 357 82 0 0 chr3 212098122 212098171 -5938987 + AluSq SINE Alu 242 290 -11 629 296 153 21 chr3 212098403 212098690 -5938468 - L2 LINE L2 -1 3312 2988 228 299 8 39 chr3 212099588 212099715 -5937443 - L1M4c LINE L1 -4741 1643 1521 24 0 0 0 chr3 212099835 212099859 -5937299 + AT_rich Low_complexity Low_complexity 1 24 0 977 151 24 18 chr3 212100352 212100548 -5936610 - AluJo SINE Alu 0 316 120 2261 114 3 0 chr3 212100766 212101074 -5936084 - AluSx SINE Alu -3 309 1 2142 100 0 4 chr3 212101079 212101393 -5935765 - AluSc SINE Alu 0 313 1 1747 260 117 40 chr3 212101927 212103154 -5934004 - L1ME LINE L1 -4362 1718 426 545 295 64 57 chr3 212103224 212103661 -5933497 - L1ME LINE L1 -5625 445 6 243 250 0 0 chr3 212103830 212103882 -5933276 - MIR3 SINE MIR 0 208 157 228 172 0 17 chr3 212105515 212105573 -5931585 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 406 306 64 35 chr3 212106088 212106261 -5930897 - MER5B DNA MER1_type 0 178 1 183 129 0 0 chr3 212107087 212107118 -5930040 + (TAA)n Simple_repeat Simple_repeat 2 32 0 2474 78 0 3 chr3 212108417 212108723 -5928435 + AluY SINE Alu 1 305 -6 222 370 50 0 chr3 212108906 212109006 -5928152 - MIR SINE MIR -80 182 78 181 294 0 0 chr3 212109122 212109173 -5927985 - L2 LINE L2 0 3313 3263 299 322 123 26 chr3 212109198 212109425 -5927733 - L2 LINE L2 -170 3143 2895 2350 26 4 0 chr3 212109426 212109695 -5927463 - AluYa5 SINE Alu -11 300 31 2018 126 7 14 chr3 212110085 212110379 -5926779 + AluSx SINE Alu 1 292 -20 235 282 54 34 chr3 212110669 212110786 -5926372 - MIR3 SINE MIR -48 160 56 1704 219 18 0 chr3 212111571 212111955 -5925203 + MER63 DNA MER1_type 672 1062 0 823 191 6 19 chr3 212113502 212113664 -5923494 - L1MC1 LINE L1 -10 6323 6164 857 212 17 0 chr3 212113665 212113844 -5923314 - MER63C DNA MER1_type -576 354 173 3222 154 40 80 chr3 212113851 212114075 -5923083 - L1MC2 LINE L1 -178 6166 5935 207 0 0 0 chr3 212114075 212114098 -5923060 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 3222 154 40 80 chr3 212114098 212114624 -5922534 - L1MC2 LINE L1 -409 5935 5446 406 270 127 39 chr3 212114626 212114885 -5922273 + L2 LINE L2 1548 1829 -1485 324 269 0 32 chr3 212115068 212115161 -5921997 + L1MC4 LINE L1 6614 6703 -1339 225 0 0 0 chr3 212115208 212115233 -5921925 + (CA)n Simple_repeat Simple_repeat 2 26 0 1241 276 86 103 chr3 212115302 212116514 -5920644 + L2 LINE L2 2110 3305 -8 351 278 83 38 chr3 212116551 212116684 -5920474 - L3 LINE CR1 -188 1389 1251 349 193 126 52 chr3 212116847 212116982 -5920176 - L1ME4a LINE L1 -21 6100 5956 3562 183 60 13 chr3 212117034 212117890 -5919268 - L1MB4 LINE L1 0 6180 5290 19027 48 3 2 chr3 212117891 212121081 -5916077 - L1PA5 LINE L1 -8 6146 2954 338 347 41 0 chr3 212121909 212122030 -5915128 + L2 LINE L2 3188 3313 0 671 267 48 0 chr3 212122415 212122602 -5914556 + L2 LINE L2 3118 3313 0 511 212 240 7 chr3 212122613 212122759 -5914399 + MIR SINE MIR 53 232 -30 194 308 187 0 chr3 212123649 212123756 -5913402 + MIR SINE MIR 35 161 -101 187 265 84 24 chr3 212125124 212125207 -5911951 + MIR3 SINE MIR 114 201 -7 498 286 81 0 chr3 212126380 212126541 -5910617 + MER96 DNA MER1_type 2 175 0 203 234 0 43 chr3 212126821 212126868 -5910290 + MIR SINE MIR 85 129 -133 2426 107 39 48 chr3 212126995 212127433 -5909725 - MER57B LTR ERV1 0 434 1 306 277 64 11 chr3 212127480 212127574 -5909584 + MIR3 SINE MIR 85 183 -25 216 299 175 23 chr3 212127654 212127871 -5909287 + MIR SINE MIR 10 259 -3 229 399 33 27 chr3 212128576 212128759 -5908399 + MIR3 SINE MIR 14 197 -11 363 301 80 63 chr3 212128874 212129113 -5908045 - MIR SINE MIR -17 245 3 351 357 85 37 chr3 212129348 212129676 -5907482 + L2 LINE L2 2917 3260 -12 217 232 137 32 chr3 212130529 212130624 -5906534 + MIR SINE MIR 31 135 -73 275 327 61 44 chr3 212131233 212131826 -5905332 + L1ME4a LINE L1 5331 5933 -188 426 257 0 0 chr3 212132389 212132498 -5904660 - MER117 DNA MER1_type -26 171 63 689 156 0 0 chr3 212134280 212134389 -5902769 + L1MC1 LINE L1 6214 6322 -11 24 0 0 0 chr3 212134432 212134456 -5902702 + AT_rich Low_complexity Low_complexity 1 24 0 1707 189 36 25 chr3 212135140 212135505 -5901653 + MLT1A2 LTR MaLR 1 369 -5 218 56 28 0 chr3 212135505 212135541 -5901617 + (CCA)n Simple_repeat Simple_repeat 1 37 0 23 0 0 0 chr3 212136120 212136143 -5901015 + AT_rich Low_complexity Low_complexity 1 23 0 191 187 99 110 chr3 212136226 212136317 -5900841 + L2 LINE L2 3223 3312 -1 209 269 120 19 chr3 212136460 212136568 -5900590 - MIR SINE MIR -69 193 75 2312 82 3 0 chr3 212136587 212136878 -5900280 - AluSp SINE Alu -21 292 1 436 272 51 19 chr3 212136907 212137065 -5900093 - MIR SINE MIR -33 229 67 184 293 17 0 chr3 212137496 212137554 -5899604 + L2 LINE L2 2949 3007 -265 197 255 21 0 chr3 212137630 212137677 -5899481 + L2 LINE L2 2930 2977 -336 390 288 110 89 chr3 212137750 212138042 -5899116 + L2 LINE L2 3014 3311 -2 218 237 51 0 chr3 212138049 212138108 -5899050 + MIR SINE MIR 117 178 -84 759 161 16 0 chr3 212138111 212138235 -5898923 + FLAM_A SINE Alu 1 126 -7 2289 102 0 7 chr3 212138456 212138760 -5898398 - AluSg SINE Alu -8 302 1 315 309 124 50 chr3 212139321 212139522 -5897636 + L3 LINE CR1 1361 1576 -1 197 65 32 0 chr3 212139599 212139630 -5897528 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 188 211 0 18 chr3 212141018 212141075 -5896083 + CT-rich Low_complexity Low_complexity 2 57 0 532 242 31 0 chr3 212141270 212141398 -5895760 - MER63 DNA MER1_type -276 786 29 237 65 0 0 chr3 212141435 212141466 -5895692 + (TG)n Simple_repeat Simple_repeat 1 31 0 2262 107 0 0 chr3 212142332 212142623 -5894535 - AluSx SINE Alu -21 291 1 208 341 23 34 chr3 212143044 212143132 -5894026 + MER5A DNA MER1_type 55 141 -48 370 261 0 11 chr3 212143527 212143615 -5893543 - L2 LINE L2 0 3313 3227 1830 138 0 28 chr3 212144387 212144757 -5892401 - AluJb SINE Alu 0 362 1 893 190 50 0 chr3 212145112 212145291 -5891867 + MER5A DNA MER1_type 2 189 0 463 291 39 28 chr3 212147501 212147755 -5889403 + L1ME LINE L1 5491 5747 -374 2024 265 81 24 chr3 212147843 212148947 -5888211 + L1MEc LINE L1 2178 3304 -2911 2038 270 107 55 chr3 212148973 212150047 -5887111 + L1MEc LINE L1 3538 4727 -1488 270 0 0 0 chr3 212150047 212150077 -5887081 + (TG)n Simple_repeat Simple_repeat 1 30 0 2038 270 107 55 chr3 212150077 212150616 -5886542 + L1MEc LINE L1 4727 5236 -979 1432 200 25 0 chr3 212150616 212150891 -5886267 + AluJo SINE Alu 1 282 -30 21 82 0 0 chr3 212150904 212150953 -5886205 + AT_rich Low_complexity Low_complexity 1 49 0 598 119 12 0 chr3 212150982 212151066 -5886092 + AluJ/FLAM SINE Alu 1 85 -227 290 136 0 0 chr3 212151066 212151110 -5886048 - THE1B LTR MaLR -320 44 1 266 269 97 11 chr3 212151398 212151491 -5885667 + MIR SINE MIR 64 164 -98 409 368 21 5 chr3 212152113 212152303 -5884855 + MIR SINE MIR 3 195 -67 277 219 78 0 chr3 212152379 212152443 -5884715 - MIR SINE MIR -46 216 148 303 391 86 0 chr3 212152882 212153033 -5884125 - L3 LINE CR1 -25 1552 1389 1580 228 106 55 chr3 212153035 212153657 -5883501 - MLT1E3 LTR MaLR 0 624 1 2105 113 31 0 chr3 212153676 212153967 -5883191 + AluSc SINE Alu 4 303 -6 771 312 129 46 chr3 212154030 212154643 -5882515 - L3 LINE CR1 -298 1279 616 2187 111 3 19 chr3 212154789 212155096 -5882062 - AluSx SINE Alu -8 304 3 218 292 158 38 chr3 212155292 212155493 -5881665 - MIR3 SINE MIR -31 231 11 234 0 0 0 chr3 212155931 212155957 -5881201 + (CA)n Simple_repeat Simple_repeat 1 26 0 1659 182 0 7 chr3 212156015 212156295 -5880863 + AluJo SINE Alu 1 278 -34 327 49 0 0 chr3 212156295 212156336 -5880822 + (CA)n Simple_repeat Simple_repeat 2 42 0 1714 175 122 11 chr3 212156396 212156750 -5880408 + MSTD LTR MaLR 4 396 0 272 235 449 7 chr3 212156885 212157021 -5880137 - MIR SINE MIR -62 200 5 248 277 40 0 chr3 212157752 212157853 -5879305 + Charlie8 DNA MER1_type 39 143 -2274 757 167 0 5 chr3 212157892 212158031 -5879127 - MLT1A1 LTR MaLR -80 285 148 842 178 0 15 chr3 212158031 212158166 -5878992 - AluJo/FLAM SINE Alu -169 133 1 1649 98 0 9 chr3 212158180 212158395 -5878763 - L1PA11 LINE L1 -1 6173 5961 1175 170 100 48 chr3 212158966 212159255 -5877903 - MER33 DNA MER1_type -20 304 1 482 288 106 9 chr3 212159497 212159723 -5877435 + MIR SINE MIR 15 262 0 225 0 0 0 chr3 212159729 212159754 -5877404 + (TG)n Simple_repeat Simple_repeat 2 26 0 217 301 143 10 chr3 212160885 212161001 -5876157 + MIR SINE MIR 30 143 -65 436 268 72 46 chr3 212161820 212162014 -5875144 + MLT1L LTR MaLR 181 379 -236 228 214 0 0 chr3 212162155 212162197 -5874961 + MLT1L LTR MaLR 558 599 -16 387 319 128 67 chr3 212162231 212162636 -5874522 - L2 LINE L2 -5 3267 2838 194 359 137 0 chr3 212162830 212162947 -5874211 + L3 LINE CR1 1417 1549 -28 232 322 35 35 chr3 212163665 212163752 -5873406 - MIR SINE MIR -92 116 30 497 284 134 37 chr3 212164099 212164367 -5872791 - MLT1J1 LTR MaLR -144 306 13 454 253 82 73 chr3 212165477 212165710 -5871448 - L2 LINE L2 -1 3312 3078 2168 134 0 0 chr3 212165865 212166172 -5870986 - AluSx SINE Alu -5 307 1 228 312 278 0 chr3 212166661 212166834 -5870324 - L2 LINE L2 -250 3063 2843 397 269 124 47 chr3 212166861 212167159 -5869999 - MER97c DNA MER1_type? -15 1075 755 776 229 28 44 chr3 212167161 212167316 -5869842 - MER97b DNA MER1_type? -194 859 708 2014 51 4 0 chr3 212167316 212167550 -5869608 - AluSp SINE Alu -25 288 54 776 229 28 44 chr3 212167550 212167643 -5869515 - MER97b DNA MER1_type? -345 708 615 218 267 105 58 chr3 212167846 212167932 -5869226 - L2 LINE L2 -32 3240 3151 2196 124 0 16 chr3 212168378 212168693 -5868465 - AluSx SINE Alu -2 310 1 214 200 0 86 chr3 212169157 212169227 -5867931 + L2 LINE L2 3248 3311 -2 584 268 138 30 chr3 212169440 212169709 -5867449 + LTR16A1 LTR ERVL 158 455 -2 2061 126 11 0 chr3 212170725 212171011 -5866147 + AluSg1 SINE Alu 1 289 -20 325 330 32 48 chr3 212171405 212171593 -5865565 + MER5A DNA MER1_type 2 186 -3 191 103 26 0 chr3 212171662 212171701 -5865457 + (CAA)n Simple_repeat Simple_repeat 3 42 0 2913 237 63 17 chr3 212172356 212173065 -5864093 - MER21B LTR ERV1 -102 761 20 398 179 17 103 chr3 212173144 212173261 -5863897 - MER21B LTR ERV1 -756 107 1 196 319 109 25 chr3 212173265 212173384 -5863774 - MIR3 SINE MIR -78 130 2 2350 87 17 0 chr3 212174478 212174777 -5862381 + AluSq SINE Alu 9 312 -1 234 297 54 0 chr3 212174917 212174991 -5862167 - L1MC4 LINE L1 -1348 6694 6617 180 385 68 17 chr3 212175493 212175610 -5861548 - L2 LINE L2 -6 3266 3144 210 37 0 0 chr3 212175669 212175696 -5861462 + (CAA)n Simple_repeat Simple_repeat 1 27 0 2208 126 29 35 chr3 212175892 212176266 -5860892 - THE1C LTR MaLR -3 372 1 10751 121 28 20 chr3 212176268 212177834 -5859324 - THE1C-int LTR MaLR -2 1578 1 2042 135 46 35 chr3 212177834 212177979 -5859179 - THE1C LTR MaLR 0 375 233 2077 126 17 0 chr3 212177979 212178272 -5858886 - AluSx SINE Alu -14 298 1 2042 135 46 35 chr3 212178272 212178497 -5858661 - THE1C LTR MaLR -142 233 1 251 267 50 0 chr3 212179013 212179073 -5858085 - MER91B DNA MER1_type -126 64 2 224 378 0 12 chr3 212179352 212179434 -5857724 + MIR SINE MIR 21 101 -107 468 261 85 45 chr3 212179502 212179701 -5857457 - L2 LINE L2 -231 3082 2876 217 337 58 47 chr3 212180253 212180443 -5856715 + MIR SINE MIR 1 192 -70 2396 76 7 0 chr3 212181230 212181521 -5855637 + AluY SINE Alu 11 303 -8 385 335 199 6 chr3 212181559 212181890 -5855268 - L3 LINE CR1 -17 1560 1166 216 0 0 0 chr3 212182066 212182090 -5855068 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 216 256 66 83 chr3 212182303 212182424 -5854734 + MIR SINE MIR 113 231 -31 875 190 31 6 chr3 212183292 212183455 -5853703 - MER45A DNA AcHobo -3 175 9 252 313 30 30 chr3 212183503 212183602 -5853556 + MLT1J2 LTR MaLR 118 216 -234 342 216 12 12 chr3 212183682 212183775 -5853383 + MLT1I LTR MaLR 319 399 -10 263 268 246 36 chr3 212184992 212185130 -5852028 + MIR SINE MIR 25 191 -71 1865 211 118 8 chr3 212186087 212186467 -5850691 + MSTB LTR MaLR 1 422 -4 415 250 0 45 chr3 212186734 212186846 -5850312 - MIR SINE MIR -148 114 8 619 286 101 64 chr3 212187031 212187408 -5849750 + MLT1L LTR MaLR 200 590 -25 944 224 6 0 chr3 212187676 212187855 -5849303 + MER5A DNA MER1_type 4 183 -6 1691 178 3 25 chr3 212188363 212188677 -5848481 + L1MB7 LINE L1 5859 6165 -19 220 253 0 67 chr3 212188718 212188793 -5848365 - MIR3 SINE MIR -23 185 116 204 130 65 0 chr3 212189145 212189191 -5847967 + (TA)n Simple_repeat Simple_repeat 1 49 0 288 222 86 12 chr3 212189572 212189653 -5847505 + MER91A DNA MER1_type 1 87 -109 195 139 0 0 chr3 212189730 212189766 -5847392 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 1004 212 125 64 chr3 212189821 212190171 -5846987 + L1MC4a LINE L1 5537 5689 -465 1079 301 87 27 chr3 212190171 212190609 -5846549 + LTR16B LTR ERVL 1 464 0 1004 212 125 64 chr3 212190609 212190747 -5846411 + L1MC4a LINE L1 5689 5817 -337 25 0 0 0 chr3 212190803 212190828 -5846330 + AT_rich Low_complexity Low_complexity 1 25 0 184 318 57 23 chr3 212191544 212191632 -5845526 - L2 LINE L2 -56 3257 3167 1640 188 0 26 chr3 212192089 212192393 -5844765 + AluJo SINE Alu 9 304 -8 193 310 40 40 chr3 212193698 212193798 -5843360 + MIR SINE MIR 23 122 -86 414 0 0 0 chr3 212194157 212194203 -5842955 + (CA)n Simple_repeat Simple_repeat 2 47 0 237 33 0 0 chr3 212194259 212194289 -5842869 + (GA)n Simple_repeat Simple_repeat 1 30 0 1651 154 44 7 chr3 212194399 212194671 -5842487 + AluSx SINE Alu 1 282 -30 4797 69 36 19 chr3 212194692 212195798 -5841360 + MER11A LTR ERVK 1 1266 0 222 341 38 15 chr3 212196452 212196584 -5840574 + L3 LINE CR1 1063 1197 -380 771 232 261 26 chr3 212196658 212196930 -5840228 + L1ME4a LINE L1 5512 5847 -274 3994 219 68 62 chr3 212196937 212197699 -5839459 + L1MB4 LINE L1 1 757 -5889 207 0 0 0 chr3 212197699 212197722 -5839436 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3994 219 68 62 chr3 212197722 212199017 -5838141 + L1MB4 LINE L1 757 2133 -4513 652 198 54 12 chr3 212199025 212199192 -5837966 + L1MB4 LINE L1 2280 2453 -4193 645 196 42 0 chr3 212199208 212199351 -5837807 + L1MB4 LINE L1 4513 4661 -1983 2203 62 6 75 chr3 212199352 212199489 -5837669 + AluY SINE Alu 1 146 -165 2900 10 0 0 chr3 212199489 212199800 -5837358 + AluYa5 SINE Alu 1 311 0 2203 62 6 75 chr3 212199800 212199983 -5837175 + AluY SINE Alu 146 299 -12 14958 173 69 80 chr3 212199996 212207665 -5829493 + L1MA6 LINE L1 7 7319 -2 3654 232 63 18 chr3 212207680 212208766 -5828392 + L1MB4 LINE L1 4649 5861 -817 8380 43 0 0 chr3 212208766 212210589 -5826569 + L1PA5 LINE L1 4307 6146 -8 3654 232 63 18 chr3 212210589 212211446 -5825712 + L1MB4 LINE L1 5861 6678 0 349 193 126 52 chr3 212211498 212211633 -5825525 + L1ME4a LINE L1 5956 6100 -21 351 278 83 38 chr3 212211796 212211929 -5825229 + L3 LINE CR1 1251 1389 -188 1241 276 86 103 chr3 212211966 212213178 -5823980 - L2 LINE L2 -8 3305 2110 225 0 0 0 chr3 212213247 212213272 -5823886 + (TG)n Simple_repeat Simple_repeat 2 26 0 324 269 0 32 chr3 212213319 212213412 -5823746 - L1MC4 LINE L1 -1339 6703 6614 406 270 127 39 chr3 212213595 212213854 -5823304 - L2 LINE L2 -1485 1829 1548 2733 138 52 2 chr3 212213854 212214333 -5822825 + L1MC1 LINE L1 5444 5946 -387 248 33 0 0 chr3 212214331 212214361 -5822797 + L1PA6 LINE L1 6094 6123 -31 * 3503 168 7 14 chr3 212214484 212215057 -5822101 + L1P LINE L1 4221 4789 -1357 2354 92 13 0 chr3 212215057 212215363 -5821795 + AluSg SINE Alu 1 310 0 3503 168 7 14 chr3 212215363 212215510 -5821648 + L1P LINE L1 4789 4936 -1210 271 173 18 60 chr3 212215620 212215788 -5821370 + GA-rich Low_complexity Low_complexity 4 164 0 13569 186 41 13 chr3 212215896 212219413 -5817745 + L1MA6 LINE L1 2709 6378 -1341 1976 140 0 0 chr3 212219413 212219742 -5817416 + AluSx SINE Alu 6 334 0 13569 186 41 13 chr3 212219742 212221123 -5816035 + L1MA6 LINE L1 6378 7719 0 755 203 25 25 chr3 212221431 212221594 -5815564 - MER5B DNA MER1_type 0 178 16 217 319 43 11 chr3 212221656 212221750 -5815408 + MIR3 SINE MIR 108 204 -4 206 188 0 42 chr3 212221812 212221860 -5815298 + L2 LINE L2 3268 3313 0 209 217 0 22 chr3 212222462 212222508 -5814650 - MIR SINE MIR -200 62 18 1775 123 66 54 chr3 212223324 212223656 -5813502 - MER1B DNA MER1_type 0 337 2 232 324 21 56 chr3 212223787 212223929 -5813229 - MIR SINE MIR -55 207 71 2246 112 0 0 chr3 212224211 212224506 -5812652 + AluSq SINE Alu 5 299 -14 1072 169 0 11 chr3 212224882 212225059 -5812099 + FAM SINE Alu 1 175 0 503 297 99 22 chr3 212225070 212225292 -5811866 - MIR SINE MIR -13 249 11 311 308 125 80 chr3 212226596 212226885 -5810273 + L2 LINE L2 2922 3223 -49 264 59 0 0 chr3 212226889 212226923 -5810235 + (TG)n Simple_repeat Simple_repeat 1 34 0 249 33 0 0 chr3 212226922 212226952 -5810206 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 21 36 0 0 chr3 212227005 212227033 -5810125 + AT_rich Low_complexity Low_complexity 1 28 0 311 306 56 21 chr3 212227307 212227451 -5809707 - MIR SINE MIR 0 262 114 386 293 44 39 chr3 212227849 212228028 -5809130 - MIR SINE MIR -62 146 21 321 317 242 0 chr3 212228749 212228935 -5808223 + MIR SINE MIR 20 250 -12 2908 83 0 0 chr3 212229488 212229863 -5807295 + THE1C LTR MaLR 1 375 0 571 276 113 42 chr3 212230656 212230810 -5806348 - MIR SINE MIR -5 257 79 1518 203 61 21 chr3 212230810 212231185 -5805973 + MLT1B LTR MaLR 1 390 0 571 276 113 42 chr3 212231185 212231269 -5805889 - MIR SINE MIR -183 79 2 308 258 132 71 chr3 212231286 212231456 -5805702 + MIR SINE MIR 27 211 -51 230 287 161 11 chr3 212231794 212231881 -5805277 - L2 LINE L2 -23 3249 3150 430 226 177 8 chr3 212232377 212232501 -5804657 + MIR SINE MIR 57 201 -61 476 302 14 7 chr3 212232743 212232882 -5804276 + L2 LINE L2 3169 3308 -5 22 0 0 0 chr3 212233497 212233519 -5803639 + AT_rich Low_complexity Low_complexity 1 22 0 254 320 116 0 chr3 212234575 212234698 -5802460 - MIR SINE MIR -62 146 1 250 314 92 0 chr3 212234698 212234779 -5802379 - MIR SINE MIR -76 132 30 219 348 0 11 chr3 212234835 212234927 -5802231 + T-rich Low_complexity Low_complexity 5 95 0 703 260 22 0 chr3 212235437 212235618 -5801540 + MER5A DNA MER1_type 1 185 -4 326 310 50 14 chr3 212235626 212235768 -5801390 + MIR SINE MIR 3 150 -58 232 360 12 0 chr3 212236448 212236534 -5800624 - L2 LINE L2 -52 3220 3134 2970 93 14 5 chr3 212236982 212237422 -5799736 - L1PA13 LINE L1 -3 6160 5717 433 267 9 97 chr3 212238005 212238222 -5798936 - MIR SINE MIR -18 244 47 708 264 11 6 chr3 212238734 212238908 -5798250 + MIR SINE MIR 3 177 -85 23 0 0 0 chr3 212239572 212239595 -5797563 + AT_rich Low_complexity Low_complexity 1 23 0 358 309 101 22 chr3 212240080 212240219 -5796939 - L2 LINE L2 -1 3271 3122 2177 22 48 15 chr3 212240376 212240672 -5796486 - AluY SINE Alu 0 305 1 261 265 20 41 chr3 212240974 212241072 -5796086 + Charlie8 DNA MER1_type 108 203 -2214 373 274 66 10 chr3 212241102 212241299 -5795859 + L1ME3A LINE L1 5732 5939 -231 862 139 120 77 chr3 212241802 212242011 -5795147 + MER20 DNA MER1_type 2 219 0 231 235 0 0 chr3 212242197 212242248 -5794910 - MIR SINE MIR -120 142 92 * 408 300 159 60 chr3 212242245 212242528 -5794630 + L2 LINE L2 2804 3058 -255 2327 101 0 16 chr3 212242528 212242845 -5794313 - AluSq SINE Alu -1 312 1 408 300 159 60 chr3 212242845 212243025 -5794133 + L2 LINE L2 3058 3313 0 183 204 0 0 chr3 212243082 212243126 -5794032 + GA-rich Low_complexity Low_complexity 4 47 0 39 0 0 0 chr3 212243589 212243628 -5793530 + AT_rich Low_complexity Low_complexity 1 39 0 2188 109 0 31 chr3 212244551 212244873 -5792285 + AluSx SINE Alu 1 312 0 391 316 65 12 chr3 212245260 212245428 -5791730 - MIR SINE MIR -26 236 60 420 226 0 0 chr3 212245813 212245897 -5791261 + MER21B LTR ERV1 13 96 -767 2219 114 0 3 chr3 212245921 212246218 -5790940 + AluSq SINE Alu 1 296 -17 1083 257 9 35 chr3 212246268 212246606 -5790552 + MER21B LTR ERV1 139 467 -396 1574 207 42 42 chr3 212246640 212247065 -5790093 + MSTB1 LTR MaLR 8 432 0 982 206 77 61 chr3 212247068 212247379 -5789779 + MER21B LTR ERV1 494 809 -54 388 278 195 12 chr3 212247502 212247671 -5789487 + MIR SINE MIR 7 206 -56 491 262 127 29 chr3 212247786 212248030 -5789128 + L2 LINE L2 3046 3313 0 214 319 69 17 chr3 212248115 212248231 -5788927 - MIR3 SINE MIR -9 199 78 268 356 87 0 chr3 212248428 212248543 -5788615 - L3 LINE CR1 -61 1516 1392 266 56 0 0 chr3 212249065 212249101 -5788057 - L1PA8 LINE L1 -440 5732 5697 3117 77 0 12 chr3 212249101 212249530 -5787628 + L1PA8 LINE L1 5745 6168 -4 23 0 0 0 chr3 212249530 212249553 -5787605 + AT_rich Low_complexity Low_complexity 1 23 0 1600 137 90 63 chr3 212250067 212250232 -5786926 + THE1C LTR MaLR 1 160 -215 2019 136 10 3 chr3 212250232 212250527 -5786631 + AluSx SINE Alu 1 297 -15 1600 137 90 63 chr3 212250527 212250726 -5786432 + THE1C LTR MaLR 160 375 0 323 211 42 0 chr3 212250727 212250798 -5786360 + MIR3 SINE MIR 109 182 -26 2234 99 0 3 chr3 212251892 212252186 -5784972 + AluSc SINE Alu 1 293 -16 306 349 37 0 chr3 212252192 212252301 -5784857 + L1ME3A LINE L1 6038 6150 -20 212 114 45 0 chr3 212253099 212253143 -5784015 + T-rich Low_complexity Low_complexity 4 49 0 298 324 142 51 chr3 212253257 212253607 -5783551 + L2 LINE L2 2341 2658 -614 377 226 88 10 chr3 212253607 212253709 -5783449 + MER81 DNA DNA 1 110 -4 298 324 142 51 chr3 212253709 212254173 -5782985 + L2 LINE L2 2658 3254 -18 857 132 11 17 chr3 212254173 212254347 -5782811 + GA-rich Low_complexity Low_complexity 4 176 0 209 260 14 82 chr3 212254423 212254496 -5782662 + L2 LINE L2 3140 3207 -65 243 341 114 30 chr3 212254912 212255079 -5782079 + MER5A DNA MER1_type 9 189 0 198 293 38 66 chr3 212255225 212255331 -5781827 + L2 LINE L2 3191 3293 -20 610 265 61 61 chr3 212255464 212255807 -5781351 + L1ME4a LINE L1 5517 5859 -262 28 29 0 0 chr3 212255959 212255994 -5781164 + AT_rich Low_complexity Low_complexity 1 35 0 581 152 11 0 chr3 212256023 212256115 -5781043 + FLAM_C SINE Alu 29 121 -22 5875 220 55 54 chr3 212256145 212257918 -5779240 + L1MD1 LINE L1 17 1791 -4749 420 105 0 0 chr3 212257918 212257975 -5779183 - Alu SINE Alu -261 57 1 5488 246 64 25 chr3 212257984 212260584 -5776574 + L1MD1 LINE L1 2935 5631 -909 2304 197 21 8 chr3 212260587 212261069 -5776089 + L1MD1 LINE L1 6124 6611 -25 207 69 0 0 chr3 212261581 212261610 -5775548 + (TAA)n Simple_repeat Simple_repeat 1 29 0 468 221 64 111 chr3 212261631 212261782 -5775376 - MER58A DNA MER1_type -2196 224 86 1968 108 77 0 chr3 212261782 212262069 -5775089 - AluSp SINE Alu -4 309 1 468 221 64 111 chr3 212262069 212262152 -5775006 - MER58A DNA MER1_type -2334 86 1 819 180 72 0 chr3 212262419 212262586 -5774572 + LTR47A LTR ERVL 274 452 0 336 287 26 17 chr3 212262614 212262729 -5774429 + MIR SINE MIR 147 262 0 243 0 0 0 chr3 212263424 212263451 -5773707 + (A)n Simple_repeat Simple_repeat 1 27 0 320 238 134 35 chr3 212263571 212263861 -5773297 + L1ME4a LINE L1 5800 6118 -3 2692 23 0 0 chr3 212263864 212264167 -5772991 + AluY SINE Alu 1 303 -8 204 67 0 0 chr3 212264477 212264507 -5772651 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 365 375 71 18 chr3 212264548 212264831 -5772327 + MLT1K LTR MaLR 56 353 -235 6892 133 11 16 chr3 212264855 212265780 -5771378 + L1P LINE L1 4123 5042 -1104 2423 64 0 10 chr3 212265780 212266076 -5771082 + AluY SINE Alu 1 293 -18 6892 133 11 16 chr3 212266076 212266393 -5770765 + L1P LINE L1 5042 5359 -787 1744 325 61 26 chr3 212266530 212267507 -5769651 + L1MCc LINE L1 34 1045 -5378 251 299 15 0 chr3 212267589 212267656 -5769502 + L3 LINE CR1 901 968 -609 218 369 64 14 chr3 212267730 212267871 -5769287 + MIR SINE MIR 5 152 -110 459 0 0 0 chr3 212268869 212268920 -5768238 + (TG)n Simple_repeat Simple_repeat 2 52 0 2263 168 47 14 chr3 212268985 212269431 -5767727 + LOR1b LTR ERV1 1 461 0 479 313 41 15 chr3 212269664 212269859 -5767299 + MIR SINE MIR 63 262 0 312 303 104 68 chr3 212269872 212270228 -5766930 + L2 LINE L2 2371 2740 -574 198 343 151 12 chr3 212270228 212270394 -5766764 + MER5A DNA MER1_type 1 189 0 199 292 146 21 chr3 212270432 212270528 -5766630 + L2 LINE L2 2992 3099 -173 912 163 0 87 chr3 212270602 212270786 -5766372 + MER45A DNA AcHobo 1 168 -10 270 316 53 44 chr3 212270796 212270910 -5766248 + L2 LINE L2 3147 3261 -11 600 274 57 51 chr3 212271839 212272271 -5764887 + L1MC/D LINE L1 5354 5791 -382 21 36 0 0 chr3 212272302 212272330 -5764828 + AT_rich Low_complexity Low_complexity 1 28 0 225 0 0 0 chr3 212272330 212272355 -5764803 + (GA)n Simple_repeat Simple_repeat 2 26 0 1690 168 25 7 chr3 212272444 212272730 -5764428 + AluJb SINE Alu 1 291 -21 931 240 7 49 chr3 212272912 212273199 -5763959 + MER63B DNA MER1_type 1 275 -161 1855 163 10 7 chr3 212273202 212273502 -5763656 - AluJb SINE Alu -11 301 1 232 169 36 60 chr3 212273544 212273627 -5763531 + L1ME4a LINE L1 6040 6120 -1 233 269 193 35 chr3 212273837 212273982 -5763176 - MIR3 SINE MIR -5 203 36 2129 121 0 3 chr3 212274028 212274326 -5762832 + AluSc SINE Alu 1 297 -12 290 312 7 57 chr3 212274470 212274611 -5762547 - MIR SINE MIR -42 220 87 2232 114 0 0 chr3 212274859 212275165 -5761993 - AluSc SINE Alu -3 306 1 432 260 94 8 chr3 212275649 212275776 -5761382 + MIR SINE MIR 60 197 -65 395 37 0 19 chr3 212277526 212277580 -5759578 + (TG)n Simple_repeat Simple_repeat 2 54 0 465 297 129 39 chr3 212278925 212279157 -5758001 + MIR SINE MIR 10 262 0 217 139 28 0 chr3 212279248 212279284 -5757874 + (TG)n Simple_repeat Simple_repeat 2 38 0 246 208 0 0 chr3 212279363 212279416 -5757742 + (TATATG)n Simple_repeat Simple_repeat 5 57 0 596 206 48 0 chr3 212279500 212279646 -5757512 + L1MB7 LINE L1 6017 6169 -15 744 313 16 16 chr3 212280342 212280588 -5756570 - MIR SINE MIR -10 252 7 298 280 0 84 chr3 212282072 212282179 -5754979 - MIR SINE MIR -79 183 86 1679 172 17 14 chr3 212283108 212283399 -5753759 - AluJb SINE Alu -20 292 1 2111 126 3 7 chr3 212285481 212285790 -5751368 + AluY SINE Alu 1 308 -3 287 325 19 32 chr3 212285797 212285951 -5751207 + MIR SINE MIR 51 202 -60 870 177 12 49 chr3 212286400 212286564 -5750594 + AluJb SINE Alu 134 291 -21 21 36 0 0 chr3 212286654 212286682 -5750476 + AT_rich Low_complexity Low_complexity 1 28 0 478 282 29 29 chr3 212287240 212287414 -5749744 + L3 LINE CR1 1166 1339 -238 262 165 198 0 chr3 212287450 212287541 -5749617 + L1MA10 LINE L1 6213 6321 -13 3039 130 64 8 chr3 212287622 212288123 -5749035 + MER1A DNA MER1_type 1 529 0 192 241 76 76 chr3 212288147 212288226 -5748932 + MIR SINE MIR 150 228 -34 258 328 10 10 chr3 212288713 212288831 -5748327 + MIR SINE MIR 59 143 -65 194 296 204 28 chr3 212289796 212289904 -5747254 - MIR SINE MIR 0 262 136 330 251 167 19 chr3 212289974 212290285 -5746873 + L1ME4a LINE L1 5762 6118 -3 2322 74 0 3 chr3 212290840 212291152 -5746006 - AluSq SINE Alu 0 311 1 4959 162 45 45 chr3 212291504 212292423 -5744735 + L1MC3 LINE L1 6707 7629 -156 1530 168 66 36 chr3 212292423 212292726 -5744432 - AluJo SINE Alu 0 312 1 4959 162 45 45 chr3 212292726 212292884 -5744274 + L1MC3 LINE L1 7629 7785 0 1800 136 0 68 chr3 212292909 212293219 -5743939 + AluJo SINE Alu 1 289 -23 545 301 100 8 chr3 212293583 212293822 -5743336 + MIR SINE MIR 2 262 0 2601 182 44 73 chr3 212293866 212293887 -5743271 + L1MC3 LINE L1 6979 6999 -786 2259 117 0 3 chr3 212293887 212294187 -5742971 + AluSx SINE Alu 1 299 -13 2601 182 44 73 chr3 212294187 212294890 -5742268 + L1MC3 LINE L1 6999 7682 -103 1221 175 24 40 chr3 212294894 212295145 -5742013 + AluJb SINE Alu 42 288 -24 578 101 0 55 chr3 212295145 212295254 -5741904 + L1MC3 LINE L1 7683 7785 0 1083 144 15 59 chr3 212295735 212295937 -5741221 + AluJb SINE Alu 1 193 -119 319 154 0 15 chr3 212295956 212296021 -5741137 + Alu SINE Alu 179 242 -59 519 60 0 0 chr3 212296152 212296219 -5740939 + (TA)n Simple_repeat Simple_repeat 2 68 0 22 0 0 0 chr3 212296664 212296686 -5740472 + AT_rich Low_complexity Low_complexity 1 22 0 208 274 0 0 chr3 212296906 212296957 -5740201 + (TA)n Simple_repeat Simple_repeat 2 52 0 254 277 53 11 chr3 212297217 212297311 -5739847 + L2 LINE L2 1968 2065 -1249 1974 147 17 0 chr3 212297328 212297627 -5739531 + AluSx SINE Alu 1 304 -8 471 201 79 154 chr3 212297807 212298021 -5739137 + MLT1H1 LTR MaLR 70 311 -284 * 486 92 13 0 chr3 212298020 212298096 -5739062 + MLT1H1 LTR MaLR 477 553 -2 650 216 0 7 chr3 212298875 212299014 -5738144 + MER20 DNA MER1_type 82 219 0 2775 31 0 0 chr3 212299144 212299462 -5737696 - AluYb8 SINE Alu 0 318 1 879 237 14 5 chr3 212299543 212299758 -5737400 - LTR67 LTR ERVL -3 554 338 205 343 33 67 chr3 212300144 212300354 -5736804 + L2 LINE L2 2828 3030 -242 2060 130 7 0 chr3 212300904 212301189 -5735969 + AluSx SINE Alu 1 287 -25 198 164 0 0 chr3 212301195 212301250 -5735908 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 1373 174 10 50 chr3 212301382 212301604 -5735554 + MLT2B3 LTR ERVL 1 209 -345 216 86 0 0 chr3 212301604 212301639 -5735519 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 1373 174 10 50 chr3 212301639 212301715 -5735443 + MLT2B3 LTR ERVL 209 287 -267 403 262 48 16 chr3 212302477 212302603 -5734555 + MLT1J2 LTR MaLR 73 202 -248 258 258 48 0 chr3 212302708 212302770 -5734388 - MIR SINE MIR -15 247 183 299 181 121 0 chr3 212303798 212303881 -5733277 + MER63 DNA MER1_type 1 93 -968 258 241 0 0 chr3 212303910 212303968 -5733190 - MER63 DNA MER1_type -539 522 465 * 2084 189 25 19 chr3 212303952 212304428 -5732730 + MER63C DNA MER1_type 255 733 -197 301 288 8 34 chr3 212304983 212305030 -5732128 - L1MC4 LINE L1 -1339 6703 6656 2142 117 13 0 chr3 212305030 212305337 -5731821 - AluSq SINE Alu -2 311 1 301 288 8 34 chr3 212305337 212305407 -5731751 - L1MC4 LINE L1 -1386 6656 6589 579 104 84 0 chr3 212305407 212305714 -5731444 + (TA)n Simple_repeat Simple_repeat 1 332 0 607 104 67 0 chr3 212305726 212305890 -5731268 + (TA)n Simple_repeat Simple_repeat 1 175 0 2233 101 20 0 chr3 212306015 212306321 -5730837 + AluSx SINE Alu 1 312 0 738 206 85 34 chr3 212306932 212307362 -5729796 + MLT1D LTR MaLR 2 504 -1 319 246 39 39 chr3 212307525 212307655 -5729503 - L1MC5 LINE L1 -50 7911 7782 328 289 26 39 chr3 212307679 212307835 -5729323 - L1ME2 LINE L1 -10 6154 6001 2392 237 62 29 chr3 212307845 212307887 -5729271 - L1ME2 LINE L1 -217 5947 5908 1303 80 36 112 chr3 212307887 212308000 -5729158 - MER30 DNA MER1_type 0 230 145 2012 145 0 7 chr3 212308000 212308327 -5728831 + AluSq SINE Alu 1 313 0 1303 80 36 112 chr3 212308327 212308462 -5728696 - MER30 DNA MER1_type -85 145 1 2392 237 62 29 chr3 212308462 212308947 -5728211 - L1ME2 LINE L1 -256 5908 5441 375 78 0 0 chr3 212308947 212308998 -5728160 + (CA)n Simple_repeat Simple_repeat 2 52 0 2392 237 62 29 chr3 212308998 212309985 -5727173 - L1ME2 LINE L1 -723 5441 4363 1665 186 89 27 chr3 212309992 212310439 -5726719 - MLT1D LTR MaLR -2 503 29 298 281 59 15 chr3 212310451 212310586 -5726572 - L1ME2 LINE L1 -1800 4346 4206 1580 178 7 34 chr3 212310719 212311017 -5726141 + AluJo SINE Alu 13 302 -10 203 310 35 11 chr3 212311103 212311190 -5725968 + L2 LINE L2 2214 2302 -1012 186 333 12 37 chr3 212311641 212311722 -5725436 + L2 LINE L2 3132 3210 -62 2130 117 3 3 chr3 212311722 212312028 -5725130 + AluSx SINE Alu 1 306 0 200 214 18 0 chr3 212312035 212312091 -5725067 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 227 273 0 0 chr3 212312671 212312726 -5724432 - Charlie8 DNA MER1_type -1001 1416 1362 249 284 107 97 chr3 212312833 212312909 -5724249 - Charlie8 DNA MER1_type -1967 450 376 1866 208 96 101 chr3 212312909 212313640 -5723518 - LTR8A LTR ERV1 0 727 1 249 284 107 97 chr3 212313640 212313925 -5723233 - Charlie8 DNA MER1_type -2041 376 82 1921 99 107 0 chr3 212313925 212314197 -5722961 - AluSg SINE Alu -9 301 1 249 284 107 97 chr3 212314197 212314235 -5722923 - Charlie8 DNA MER1_type -2335 82 46 453 280 95 21 chr3 212314313 212314556 -5722602 - L1MC4a LINE L1 -1925 5883 5623 288 315 161 20 chr3 212315173 212315465 -5721693 - L2 LINE L2 -1134 2180 1848 2337 86 0 0 chr3 212317251 212317552 -5719606 - AluSx SINE Alu -11 301 1 626 250 52 57 chr3 212318307 212318727 -5718431 - HAL1 LINE L1 -887 1620 1203 23 0 0 0 chr3 212318816 212318839 -5718319 + AT_rich Low_complexity Low_complexity 1 23 0 225 302 0 0 chr3 212318916 212318979 -5718179 - Charlie7 DNA MER1_type -2525 87 25 180 0 0 0 chr3 212319062 212319082 -5718076 + (T)n Simple_repeat Simple_repeat 1 20 0 844 57 8 8 chr3 212319159 212319283 -5717875 + (TTTTC)n Simple_repeat Simple_repeat 3 126 0 661 205 0 0 chr3 212319286 212319398 -5717760 - FLAM_C SINE Alu -30 113 2 23 0 0 0 chr3 212319404 212319427 -5717731 + AT_rich Low_complexity Low_complexity 1 23 0 506 298 12 6 chr3 212319557 212319725 -5717433 + MER57-int LTR ERV1 6842 7010 -527 453 152 18 80 chr3 212319806 212319918 -5717240 + MER57-int LTR ERV1 7431 7535 -2 994 281 260 22 chr3 212319930 212320268 -5716890 - L2 LINE L2 -1067 2247 1991 2445 82 0 0 chr3 212320268 212320573 -5716585 + AluSx SINE Alu 1 305 -7 994 281 260 22 chr3 212320573 212320663 -5716495 - L2 LINE L2 -1323 1991 1924 1587 190 31 14 chr3 212320663 212320953 -5716205 + AluJo SINE Alu 1 295 -17 994 281 260 22 chr3 212320953 212321545 -5715613 - L2 LINE L2 -1390 1924 983 323 275 33 25 chr3 212321611 212321731 -5715427 - MIR SINE MIR -65 143 31 231 213 0 0 chr3 212322241 212322316 -5714842 + T-rich Low_complexity Low_complexity 1 75 0 2795 122 9 18 chr3 212322587 212323023 -5714135 - MER57B LTR ERV1 -2 432 1 483 134 18 80 chr3 212323024 212323136 -5714022 - MER57B-int LTR ERV1 -2 7535 7431 552 304 22 17 chr3 212323176 212323422 -5713736 - MER57B-int LTR ERV1 -536 7001 6806 1779 272 23 52 chr3 212324935 212326298 -5710860 - MER57B-int LTR ERV1 -1361 6176 2017 409 308 90 65 chr3 212326388 212327030 -5710128 - MER57B-int LTR ERV1 -2919 3882 3225 265 252 36 36 chr3 212327091 212327202 -5709956 - MER57B-int LTR ERV1 -4041 4937 4827 262 279 70 35 chr3 212327259 212327431 -5709727 - MER57B-int LTR ERV1 -3803 2998 2821 2479 87 3 0 chr3 212327438 212327750 -5709408 + AluSp SINE Alu 1 313 0 632 289 59 49 chr3 212327850 212328339 -5708819 - MER57B-int LTR ERV1 -4100 2701 158 32 0 0 0 chr3 212329077 212329109 -5708049 + AT_rich Low_complexity Low_complexity 1 32 0 8568 35 7 0 chr3 212329130 212330948 -5706210 - L1PA5 LINE L1 -4 6150 4326 22725 55 55 0 chr3 212330948 212334042 -5703116 - L1PA5 LINE L1 -2881 3265 3 2332 105 0 3 chr3 212334176 212334481 -5702677 + AluSc SINE Alu 1 304 -5 198 0 0 0 chr3 212335128 212335150 -5702008 + (T)n Simple_repeat Simple_repeat 1 22 0 636 267 15 9 chr3 212335640 212335914 -5701244 - MER57B-int LTR ERV1 -7228 309 3 424 143 11 66 chr3 212335918 212336009 -5701149 - MER57B LTR ERV1 0 434 349 * 1299 132 20 0 chr3 212336008 212336212 -5700946 - MER57B LTR ERV1 -226 208 1 200 59 29 0 chr3 212336418 212336452 -5700706 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2228 110 0 0 chr3 212336455 212336737 -5700421 - AluSx SINE Alu -30 282 1 886 257 46 0 chr3 212337244 212337462 -5699696 + MIR SINE MIR 34 261 -1 181 243 0 0 chr3 212337707 212337744 -5699414 + L2 LINE L2 1580 1616 -1698 208 359 0 13 chr3 212338094 212338172 -5698986 + MIR3 SINE MIR 6 82 -126 251 293 0 0 chr3 212338198 212338273 -5698885 - MIR3 SINE MIR -119 89 15 1562 206 29 0 chr3 212338891 212339167 -5697991 - AluJo SINE Alu -28 284 1 306 340 35 46 chr3 212339245 212339442 -5697716 - L1ME4a LINE L1 -202 5919 5725 721 200 179 20 chr3 212339802 212339997 -5697161 + MIR SINE MIR 6 231 -31 24 0 0 0 chr3 212340224 212340248 -5696910 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 212340854 212340875 -5696283 + AT_rich Low_complexity Low_complexity 1 21 0 2406 70 0 25 chr3 212341056 212341371 -5695787 + AluY SINE Alu 1 307 -4 376 250 50 29 chr3 212342070 212342210 -5694948 + MER103 DNA DNA 23 165 -1 21 0 0 0 chr3 212345028 212345049 -5692109 + AT_rich Low_complexity Low_complexity 1 21 0 2334 89 0 0 chr3 212345083 212345376 -5691782 - AluSc SINE Alu -6 303 11 184 447 35 7 chr3 212345405 212345546 -5691612 + L2 LINE L2 2942 3086 -186 1170 171 95 12 chr3 212345933 212346185 -5690973 - MLT1A1 LTR MaLR -92 273 1 28 86 0 0 chr3 212346477 212346547 -5690611 + AT_rich Low_complexity Low_complexity 1 70 0 806 99 0 0 chr3 212347048 212347159 -5689999 + HY1 scRNA scRNA 1 111 -1 24 0 0 0 chr3 212347710 212347734 -5689424 + AT_rich Low_complexity Low_complexity 1 24 0 2373 89 3 0 chr3 212351767 212352069 -5685089 - AluSp SINE Alu -10 303 1 2263 23 0 0 chr3 212352266 212352523 -5684635 - AluY SINE Alu -54 257 1 316 241 127 31 chr3 212352526 212352817 -5684341 - L1ME4a LINE L1 -3 6118 5800 234 0 0 0 chr3 212352937 212352963 -5684195 + (T)n Simple_repeat Simple_repeat 1 26 0 1861 95 0 8 chr3 212353537 212353780 -5683378 + AluSg SINE Alu 53 293 -17 1903 61 148 8 chr3 212354521 212354785 -5682373 + AluY SINE Alu 1 301 -10 21 36 0 0 chr3 212355890 212355918 -5681240 + AT_rich Low_complexity Low_complexity 1 28 0 31 44 0 0 chr3 212355942 212355987 -5681171 + AT_rich Low_complexity Low_complexity 1 45 0 2481 61 0 0 chr3 212357304 212357599 -5679559 + AluY SINE Alu 1 295 -16 1658 158 50 13 chr3 212357691 212357989 -5679169 + AluJb SINE Alu 1 309 -3 329 164 16 0 chr3 212358033 212358094 -5679064 - Tigger4(Zombi) DNA MER2_type 0 2731 2670 275 250 62 38 chr3 212358194 212358274 -5678884 + MER5B DNA MER1_type 97 178 0 702 187 27 27 chr3 212358281 212358431 -5678727 + MER5A DNA MER1_type 40 189 0 833 126 103 6 chr3 212358684 212358858 -5678300 - MER33 DNA MER1_type 0 324 134 599 174 0 10 chr3 212358848 212358946 -5678212 - MER33 DNA MER1_type -227 97 1 * 1927 79 32 0 chr3 212359753 212360005 -5677153 - AluSc SINE Alu -49 260 1 294 328 141 16 chr3 212360088 212360280 -5676878 + MIR SINE MIR 47 262 0 210 339 58 50 chr3 212361858 212361979 -5675179 - L2 LINE L2 -1 3271 3150 22 35 0 0 chr3 212362461 212362490 -5674668 + AT_rich Low_complexity Low_complexity 1 29 0 209 250 0 18 chr3 212362647 212362703 -5674455 + (TA)n Simple_repeat Simple_repeat 2 56 0 24 53 0 0 chr3 212362767 212362805 -5674353 + AT_rich Low_complexity Low_complexity 1 38 0 281 101 72 0 chr3 212363511 212363580 -5673578 - L2 LINE L2 -411 2902 2829 678 295 163 3 chr3 212363616 212363757 -5673401 - L2 LINE L2 -1465 1849 1732 3197 136 14 2 chr3 212363757 212364264 -5672894 - MER75 DNA T2_type 0 514 2 678 295 163 3 chr3 212364264 212364447 -5672711 - L2 LINE L2 -1582 1732 1473 2462 248 108 60 chr3 212364448 212365775 -5671383 - L2 LINE L2 -2 3311 1904 696 315 56 36 chr3 212365783 212366142 -5671016 - L2 LINE L2 -1869 1445 1080 251 222 0 0 chr3 212366287 212366341 -5670817 - L1ME LINE L1 -377 5793 5740 2236 112 0 3 chr3 212367126 212367439 -5669719 + AluSx SINE Alu 1 312 0 287 297 178 18 chr3 212367446 212367665 -5669493 + L2 LINE L2 3019 3272 0 1477 194 185 50 chr3 212369501 212369923 -5667235 - MER68 LTR ERV1 -78 484 6 225 163 93 0 chr3 212370451 212370494 -5666664 - MIR SINE MIR 0 262 216 340 313 0 12 chr3 212370529 212370612 -5666546 - MIR SINE MIR -150 112 31 299 221 15 0 chr3 212371670 212371738 -5665420 - MER3 DNA MER1_type 0 209 141 1869 136 3 39 chr3 212371777 212372085 -5665073 + AluSx SINE Alu 6 302 -10 700 170 105 13 chr3 212372092 212372245 -5664913 - MER3 DNA MER1_type -42 167 1 358 296 19 80 chr3 212372960 212373122 -5664036 - MIR SINE MIR -104 158 7 27 29 0 0 chr3 212373588 212373622 -5663536 + AT_rich Low_complexity Low_complexity 1 34 0 335 336 113 36 chr3 212376277 212376720 -5660438 - L2 LINE L2 -345 2969 2493 350 307 125 48 chr3 212376754 212377171 -5659987 + L1ME4a LINE L1 5621 6069 -52 22 70 0 0 chr3 212377191 212377234 -5659924 + AT_rich Low_complexity Low_complexity 1 43 0 1994 148 0 3 chr3 212377391 212377694 -5659464 + AluSx SINE Alu 3 304 -8 2511 209 117 24 chr3 212379070 212379502 -5657656 + L1ME2 LINE L1 5370 5760 -574 1898 154 0 13 chr3 212379502 212379800 -5657358 + AluJo SINE Alu 2 295 -17 2511 209 117 24 chr3 212379800 212380103 -5657055 + L1ME2 LINE L1 5760 6334 0 216 0 0 0 chr3 212380772 212380796 -5656362 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 871 229 24 29 chr3 212380830 212381035 -5656123 + MIR SINE MIR 58 261 -1 202 284 57 68 chr3 212381551 212381639 -5655519 + MIR SINE MIR 20 106 -102 610 294 103 15 chr3 212381930 212382202 -5654956 - MER102b DNA MER1_type -44 297 2 345 278 11 0 chr3 212382918 212383008 -5654150 - MIR SINE MIR -6 256 166 2394 84 3 3 chr3 212383251 212383560 -5653598 + AluSp SINE Alu 1 309 -4 1309 178 0 13 chr3 212385151 212385382 -5651776 + AluJo SINE Alu 1 228 -84 21 0 0 0 chr3 212389065 212389086 -5648072 + AT_rich Low_complexity Low_complexity 1 21 0 353 300 53 47 chr3 212389463 212389613 -5647545 + MIR3 SINE MIR 2 152 -56 226 305 61 0 chr3 212389798 212389880 -5647278 + MIR SINE MIR 77 163 -99 24 32 0 0 chr3 212390532 212390563 -5646595 + AT_rich Low_complexity Low_complexity 1 31 0 1852 171 0 16 chr3 212391791 212392096 -5645062 + AluJo SINE Alu 1 300 -12 2352 96 0 3 chr3 212392674 212392977 -5644181 + AluY SINE Alu 1 302 -9 456 233 198 20 chr3 212392991 212393193 -5643965 - L1MC4 LINE L1 -140 7902 7665 976 277 57 23 chr3 212393202 212393552 -5643606 - L1MC4 LINE L1 -1223 6819 6458 21 0 0 0 chr3 212394183 212394204 -5642954 + AT_rich Low_complexity Low_complexity 1 21 0 357 259 101 25 chr3 212394700 212394836 -5642322 + MIR SINE MIR 42 186 -64 2020 83 69 0 chr3 212395674 212395951 -5641207 - AluY SINE Alu -15 296 1 1877 232 259 22 chr3 212396118 212396984 -5640174 + L1MC4 LINE L1 6729 7690 -118 286 124 0 0 chr3 212396989 212397048 -5640110 + L1MC4 LINE L1 7927 8031 -10 2430 90 0 0 chr3 212397871 212398182 -5638976 + AluSx SINE Alu 1 311 -1 398 287 207 0 chr3 212398261 212398435 -5638723 - MIR SINE MIR -6 256 47 218 216 0 20 chr3 212400180 212400231 -5636927 + MER5A DNA MER1_type 112 161 -28 213 39 0 0 chr3 212400609 212400635 -5636523 + (A)n Simple_repeat Simple_repeat 1 26 0 2546 49 3 3 chr3 212401983 212402289 -5634869 + AluY SINE Alu 1 306 -5 716 144 8 0 chr3 212402567 212402685 -5634473 - FRAM SINE Alu 0 176 58 21 0 0 0 chr3 212402823 212402844 -5634314 + AT_rich Low_complexity Low_complexity 1 21 0 1372 94 49 0 chr3 212404314 212404517 -5632641 + L1PA8A LINE L1 5892 6104 -27 198 0 0 0 chr3 212404518 212404540 -5632618 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 208 206 0 0 chr3 212404583 212404617 -5632541 + polypurine Low_complexity Low_complexity 3 36 0 186 341 59 12 chr3 212404773 212404858 -5632300 - MIR SINE MIR -63 145 57 13167 123 50 43 chr3 212406821 212409219 -5627939 + Tigger1 DNA MER2_type 1 2415 -3 2485 79 0 0 chr3 212409730 212410033 -5627125 - AluSx SINE Alu -9 303 1 198 0 0 0 chr3 212410782 212410804 -5626354 + (A)n Simple_repeat Simple_repeat 1 22 0 987 135 0 0 chr3 212411451 212411592 -5625566 - AluSg/x SINE Alu -5 307 167 471 240 0 0 chr3 212413448 212413552 -5623606 - AluSc SINE Alu 0 309 206 1664 171 0 26 chr3 212414030 212414335 -5622823 - AluJb SINE Alu -15 297 1 741 167 0 0 chr3 212414779 212414887 -5622271 - FLAM_A SINE Alu -34 108 1 1581 166 24 30 chr3 212416274 212416569 -5620589 - AluJb SINE Alu -19 293 1 777 75 0 0 chr3 212416695 212416789 -5620369 + AluSc SINE Alu 205 298 -11 2159 101 0 60 chr3 212416937 212417253 -5619905 - AluSx SINE Alu -15 297 1 224 341 11 23 chr3 212417435 212417523 -5619635 + MIR3 SINE MIR 111 197 -11 782 256 56 17 chr3 212417834 212418068 -5619090 + Charlie1a DNA MER1_type 1 243 -1212 3865 206 82 24 chr3 212418099 212419009 -5618149 + Charlie1a DNA MER1_type 368 1341 -1420 2376 98 0 13 chr3 212419009 212419326 -5617832 - AluSq SINE Alu 0 313 1 3865 206 82 24 chr3 212419326 212419405 -5617753 + Charlie1a DNA MER1_type 1341 1414 -41 795 314 193 29 chr3 212419625 212420794 -5616364 + L2 LINE L2 1864 3234 -38 461 311 85 32 chr3 212421006 212421254 -5615904 + MIR SINE MIR 2 262 0 406 118 0 0 chr3 212421342 212421393 -5615765 + Alu SINE Alu 2 52 -257 1621 98 0 0 chr3 212421394 212421608 -5615550 + AluSg/x SINE Alu 92 305 -5 517 237 59 12 chr3 212424694 212424863 -5612295 - L1ME3A LINE L1 -58 6112 5936 354 74 0 0 chr3 212424864 212424918 -5612240 + (TTTC)n Simple_repeat Simple_repeat 4 57 0 1610 192 16 19 chr3 212424921 212425229 -5611929 - AluJo SINE Alu -4 308 2 2269 175 62 20 chr3 212425646 212426052 -5611106 + MSTA LTR MaLR 2 424 -4 5614 153 30 5 chr3 212426056 212426988 -5610170 + MSTA-int LTR MaLR 1 955 -696 21 0 0 0 chr3 212428011 212428032 -5609126 + AT_rich Low_complexity Low_complexity 1 21 0 1198 179 0 5 chr3 212428256 212428457 -5608701 - AluJb SINE Alu -28 284 85 2134 107 3 3 chr3 212428842 212429133 -5608025 + AluSx SINE Alu 1 291 -21 23 0 0 0 chr3 212431110 212431133 -5606025 + AT_rich Low_complexity Low_complexity 1 23 0 2481 55 0 0 chr3 212434248 212434538 -5602620 - AluY SINE Alu -5 306 17 241 301 177 9 chr3 212436023 212436136 -5601022 - MIR SINE MIR -111 151 20 1725 184 3 13 chr3 212436588 212436887 -5600271 - AluJo SINE Alu -16 296 1 490 291 50 33 chr3 212438488 212438670 -5598488 - Charlie8 DNA MER1_type -2232 185 1 295 321 187 11 chr3 212438829 212439016 -5598142 - MIR SINE MIR -12 250 31 2478 146 6 3 chr3 212439255 212439619 -5597539 - MER47A DNA MER2_type -1 365 1 2358 108 3 40 chr3 212440354 212440724 -5596434 + MSTA-int LTR MaLR 1296 1651 0 2362 163 58 15 chr3 212440724 212441134 -5596024 + MSTA LTR MaLR 1 428 0 213 343 14 0 chr3 212441357 212441427 -5595731 - MIR3 SINE MIR -51 157 87 285 264 146 27 chr3 212442535 212442645 -5594513 + MIR SINE MIR 129 251 -11 407 255 0 10 chr3 212442773 212442875 -5594283 - L2 LINE L2 -527 2787 2687 2498 132 44 19 chr3 212442875 212442989 -5594169 + L1MC1 LINE L1 5214 5324 -1009 2151 115 0 13 chr3 212442989 212443313 -5593845 + AluSx SINE Alu 1 312 0 2498 132 44 19 chr3 212443313 212443676 -5593482 + L1MC1 LINE L1 5324 5703 -630 672 148 396 0 chr3 212443676 212443845 -5593313 + MER46A DNA MER2_type 1 236 0 3693 158 45 0 chr3 212443845 212444448 -5592710 + L1MC1 LINE L1 5702 6331 -2 295 255 165 23 chr3 212444988 212445132 -5592026 - MIR SINE MIR -49 159 26 472 227 0 17 chr3 212445256 212445375 -5591783 - L1MC4 LINE L1 0 8042 7926 1897 237 39 60 chr3 212445379 212445655 -5591503 - L1MEc LINE L1 -4104 2292 2012 2168 87 0 7 chr3 212445655 212445930 -5591228 - AluSp SINE Alu -40 273 1 1889 160 0 20 chr3 212445930 212446236 -5590922 - AluJo SINE Alu -12 300 1 1897 237 39 60 chr3 212446236 212446722 -5590436 - L1MEc LINE L1 -4382 2014 1545 1410 119 0 0 chr3 212446732 212446965 -5590193 - AluY SINE Alu 0 321 89 2119 114 0 37 chr3 212446978 212447303 -5589855 - AluSq SINE Alu 0 313 1 997 251 54 41 chr3 212447316 212447779 -5589379 - L1MEc LINE L1 -4876 1520 1052 196 308 31 31 chr3 212448190 212448255 -5588903 + MIR3 SINE MIR 90 154 -54 191 298 89 24 chr3 212448741 212448865 -5588293 + MIR SINE MIR 74 205 -57 2303 183 14 107 chr3 212448896 212449689 -5587469 + L1M4 LINE L1 4614 5326 -825 1606 149 0 55 chr3 212449772 212450061 -5587097 - AluJo SINE Alu -17 295 23 25 31 0 0 chr3 212450074 212450106 -5587052 + AT_rich Low_complexity Low_complexity 1 32 0 2425 243 101 31 chr3 212450644 212451132 -5586026 + L1ME1 LINE L1 5271 5861 -305 1883 155 0 23 chr3 212451132 212451442 -5585716 + AluJb SINE Alu 1 303 -9 2425 243 101 31 chr3 212451442 212451772 -5585386 + L1ME1 LINE L1 5861 6166 0 586 330 24 19 chr3 212451825 212452034 -5585124 + MIR SINE MIR 53 262 0 264 275 25 0 chr3 212453030 212453110 -5584048 - MIR SINE MIR -69 193 112 309 250 60 92 chr3 212453267 212453451 -5583707 + MIR SINE MIR 77 254 -8 231 250 47 16 chr3 212454534 212454598 -5582560 - MIR SINE MIR -106 156 91 533 301 100 8 chr3 212455695 212455934 -5581224 + MIR SINE MIR 2 262 0 2927 182 44 73 chr3 212455978 212455999 -5581159 + L1MC3 LINE L1 6979 6999 -786 2251 117 0 3 chr3 212455999 212456299 -5580859 + AluSx SINE Alu 1 299 -13 2927 182 44 73 chr3 212456299 212457002 -5580156 + L1MC3 LINE L1 6999 7682 -103 1180 179 24 40 chr3 212457006 212457257 -5579901 + AluJb SINE Alu 42 288 -24 634 101 0 55 chr3 212457257 212457366 -5579792 + L1MC3 LINE L1 7683 7785 0 1104 138 5 58 chr3 212457847 212458035 -5579123 + AluJb SINE Alu 1 178 -134 336 154 0 15 chr3 212458068 212458133 -5579025 + Alu SINE Alu 178 241 -59 519 60 0 0 chr3 212458264 212458331 -5578827 + (TA)n Simple_repeat Simple_repeat 2 68 0 22 0 0 0 chr3 212458776 212458798 -5578360 + AT_rich Low_complexity Low_complexity 1 22 0 208 274 0 0 chr3 212459018 212459069 -5578089 + (TA)n Simple_repeat Simple_repeat 1 51 0 248 277 53 11 chr3 212459329 212459423 -5577735 + L2 LINE L2 1968 2065 -1249 1960 147 17 0 chr3 212459440 212459739 -5577419 + AluSx SINE Alu 1 304 -8 534 237 121 16 chr3 212459919 212460113 -5577045 + MLT1H1 LTR MaLR 70 280 -309 525 92 13 0 chr3 212460132 212460208 -5576950 + MLT1H1 LTR MaLR 477 553 -2 702 216 0 7 chr3 212460987 212461126 -5576032 + MER20 DNA MER1_type 82 219 0 2457 94 0 0 chr3 212461256 212461574 -5575584 - AluYb8 SINE Alu 0 318 1 1975 234 257 21 chr3 212461742 212462608 -5574550 + L1MC4 LINE L1 6729 7690 -118 300 124 0 0 chr3 212462613 212462672 -5574486 + L1MC4 LINE L1 7927 8031 -10 2455 90 0 0 chr3 212463495 212463806 -5573352 + AluSx SINE Alu 1 311 -1 385 282 207 0 chr3 212463885 212464059 -5573099 - MIR SINE MIR -6 256 47 224 216 0 20 chr3 212465804 212465855 -5571303 + MER5A DNA MER1_type 112 161 -28 204 40 0 0 chr3 212466233 212466258 -5570900 + (A)n Simple_repeat Simple_repeat 1 25 0 2574 49 3 3 chr3 212467607 212467913 -5569245 + AluY SINE Alu 1 306 -5 769 144 8 0 chr3 212468191 212468309 -5568849 - FRAM SINE Alu 0 176 58 21 0 0 0 chr3 212468447 212468468 -5568690 + AT_rich Low_complexity Low_complexity 1 21 0 1395 94 49 0 chr3 212469938 212470141 -5567017 + L1PA8A LINE L1 5892 6104 -27 198 0 0 0 chr3 212470142 212470164 -5566994 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 208 206 0 0 chr3 212470207 212470241 -5566917 + polypurine Low_complexity Low_complexity 3 36 0 501 105 13 0 chr3 212472316 212472392 -5564766 - MLT1H1 LTR MaLR -2 553 477 507 225 120 22 chr3 212472411 212472606 -5564552 - MLT1H1 LTR MaLR -309 246 70 2198 116 7 0 chr3 212472786 212473088 -5564070 - AluSx SINE Alu -8 304 1 511 295 186 15 chr3 212473090 212473429 -5563729 + L2 LINE L2 1851 2247 -1067 507 152 18 80 chr3 212473441 212473553 -5563605 - MER57-int LTR ERV1 -2 7535 7431 572 304 15 9 chr3 212473591 212473804 -5563354 - MER57-int LTR ERV1 -527 7010 6842 23 0 0 0 chr3 212473932 212473955 -5563203 + AT_rich Low_complexity Low_complexity 1 23 0 680 202 0 0 chr3 212473961 212474070 -5563088 + FLAM_C SINE Alu 2 110 -33 844 57 8 8 chr3 212474077 212474201 -5562957 + (GAAAA)n Simple_repeat Simple_repeat 3 126 0 180 0 0 0 chr3 212474278 212474298 -5562860 + (A)n Simple_repeat Simple_repeat 1 20 0 249 302 0 0 chr3 212474383 212474446 -5562712 + Charlie7 DNA MER1_type 25 87 -2525 23 0 0 0 chr3 212474523 212474546 -5562612 + AT_rich Low_complexity Low_complexity 1 23 0 28 48 0 0 chr3 212475298 212475340 -5561818 + AT_rich Low_complexity Low_complexity 1 42 0 214 174 0 43 chr3 212475638 212475707 -5561451 + C-rich Low_complexity Low_complexity 2 67 0 2011 136 0 13 chr3 212476999 212477309 -5559849 + AluSc SINE Alu 1 306 -3 249 331 19 32 chr3 212477316 212477470 -5559688 + MIR SINE MIR 51 202 -60 14889 77 84 8 chr3 212478278 212480412 -5556746 - L1P LINE L1 -3707 2439 143 917 233 23 14 chr3 212480890 212481105 -5556053 + LTR67 LTR ERVL 338 554 -3 2655 46 0 0 chr3 212481186 212481491 -5555667 + AluY SINE Alu 1 305 -6 198 0 0 0 chr3 212482136 212482158 -5555000 + (T)n Simple_repeat Simple_repeat 1 22 0 1913 94 72 0 chr3 212482743 212483019 -5554139 - AluY SINE Alu -15 296 1 281 202 106 19 chr3 212483187 212483291 -5553867 + L1MD3 LINE L1 6779 6926 -1116 1182 256 32 11 chr3 212483595 212483880 -5553278 - AluJb SINE Alu -11 291 1 180 0 0 0 chr3 212483969 212483989 -5553169 + (TC)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr3 212483994 212484022 -5553136 + AT_rich Low_complexity Low_complexity 1 28 0 675 276 72 49 chr3 212484053 212484481 -5552677 - L1ME LINE L1 -328 5793 5356 236 333 40 0 chr3 212485289 212485364 -5551794 - MIR SINE MIR -165 97 20 269 191 202 21 chr3 212485369 212485463 -5551695 - L1MA10 LINE L1 -13 6321 6211 425 281 30 30 chr3 212485497 212485661 -5551497 - L3 LINE CR1 -238 1339 1176 23 92 0 0 chr3 212485825 212485890 -5551268 + GC_rich Low_complexity Low_complexity 1 65 0 326 279 0 0 chr3 212486175 212486254 -5550904 + C-rich Low_complexity Low_complexity 1 79 0 2500 55 0 0 chr3 212539089 212539379 -5497779 - AluY SINE Alu -5 306 17 204 301 177 9 chr3 212540864 212540977 -5496181 - MIR SINE MIR -111 151 20 1737 184 3 13 chr3 212541429 212541728 -5495430 - AluJo SINE Alu -16 296 1 474 252 58 39 chr3 212543356 212543511 -5493647 - Charlie8 DNA MER1_type -2259 158 1 242 321 187 11 chr3 212543670 212543857 -5493301 - MIR SINE MIR -12 250 31 2370 146 6 3 chr3 212544096 212544460 -5492698 - MER47A DNA MER2_type -1 365 1 202 328 171 17 chr3 212544783 212545192 -5491966 + L2 LINE L2 1985 2456 -858 2171 102 0 60 chr3 212545229 212545544 -5491614 - AluSx SINE Alu -16 296 1 203 349 0 24 chr3 212545726 212545809 -5491349 + MIR3 SINE MIR 111 191 -17 801 270 52 9 chr3 212546125 212546358 -5490800 + Charlie1a DNA MER1_type 1 243 -1212 3799 207 82 23 chr3 212546389 212547298 -5489860 + Charlie1a DNA MER1_type 368 1341 -1420 2374 101 0 13 chr3 212547298 212547615 -5489543 - AluSq SINE Alu 0 313 1 3799 207 82 23 chr3 212547615 212547694 -5489464 + Charlie1a DNA MER1_type 1341 1414 -41 621 318 186 29 chr3 212547914 212549083 -5488075 + L2 LINE L2 1864 3234 -38 397 300 90 34 chr3 212549310 212549543 -5487615 + MIR SINE MIR 17 262 0 394 115 0 0 chr3 212549630 212549682 -5487476 + Alu SINE Alu 1 52 -250 1629 98 0 0 chr3 212549683 212549897 -5487261 + AluSg/x SINE Alu 94 307 -5 498 204 55 72 chr3 212552983 212553140 -5484018 - L1ME3A LINE L1 -58 6112 5954 519 66 0 0 chr3 212553140 212553216 -5483942 + (CTTG)n Simple_repeat Simple_repeat 2 77 0 1618 192 16 19 chr3 212553222 212553530 -5483628 - AluJo SINE Alu -4 308 2 498 204 55 72 chr3 212553530 212553546 -5483612 - L1ME3A LINE L1 -221 5949 5935 2127 175 62 20 chr3 212553947 212554353 -5482805 + MSTA LTR MaLR 2 424 -4 9737 148 20 25 chr3 212554357 212556015 -5481143 + MSTA-int LTR MaLR 1 1651 0 2369 163 58 15 chr3 212556015 212556425 -5480733 + MSTA LTR MaLR 1 428 0 195 343 14 0 chr3 212556648 212556718 -5480440 - MIR3 SINE MIR -51 157 87 262 222 0 0 chr3 212557888 212557933 -5479225 + L2 LINE L2 3211 3255 -17 378 255 0 10 chr3 212558061 212558163 -5478995 - L2 LINE L2 -527 2787 2687 2475 132 42 25 chr3 212558163 212558277 -5478881 + L1MC1 LINE L1 5214 5325 -1008 2180 120 0 16 chr3 212558277 212558594 -5478564 + AluSx SINE Alu 1 312 0 2475 132 42 25 chr3 212558594 212558960 -5478198 + L1MC1 LINE L1 5325 5703 -630 645 150 401 0 chr3 212558960 212559127 -5478031 + MER46A DNA MER2_type 1 234 -2 3481 162 45 0 chr3 212559127 212559732 -5477426 + L1MC1 LINE L1 5700 6331 -2 272 259 95 18 chr3 212560272 212560416 -5476742 - MIR SINE MIR -49 159 26 422 229 8 17 chr3 212560541 212560659 -5476499 - L1MC4 LINE L1 0 8042 7926 1902 235 40 63 chr3 212560663 212560940 -5476218 - L1MEc LINE L1 -4104 2292 2010 2204 84 0 7 chr3 212560940 212561215 -5475943 - AluSp SINE Alu -40 273 1 1883 157 3 20 chr3 212561215 212561520 -5475638 - AluJo SINE Alu -12 300 1 1902 235 40 63 chr3 212561520 212562006 -5475152 - L1MEc LINE L1 -4384 2012 1545 1417 119 0 0 chr3 212562016 212562249 -5474909 - AluY SINE Alu 0 321 89 2160 111 0 37 chr3 212562262 212562587 -5474571 - AluSq SINE Alu 0 313 1 896 257 54 41 chr3 212562600 212563063 -5474095 - L1MEc LINE L1 -4876 1520 1052 2251 186 12 107 chr3 212564180 212564975 -5472183 + L1ME1 LINE L1 4614 5326 -825 1620 149 0 55 chr3 212565058 212565347 -5471811 - AluJo SINE Alu -17 295 23 25 31 0 0 chr3 212565360 212565392 -5471766 + AT_rich Low_complexity Low_complexity 1 32 0 2372 247 87 28 chr3 212565936 212566419 -5470739 + L1ME1 LINE L1 5283 5857 -309 1927 155 0 22 chr3 212566419 212566735 -5470423 + AluJb SINE Alu 1 309 -3 2372 247 87 28 chr3 212566735 212567065 -5470093 + L1ME1 LINE L1 5857 6166 0 530 345 19 14 chr3 212567118 212567327 -5469831 + MIR SINE MIR 53 262 0 240 275 25 0 chr3 212568323 212568403 -5468755 - MIR SINE MIR -69 193 112 256 250 60 92 chr3 212568560 212568744 -5468414 + MIR SINE MIR 77 254 -8 222 214 54 18 chr3 212569827 212569883 -5467275 - MIR SINE MIR -106 156 99 24 67 0 0 chr3 212570671 212570716 -5466442 + AT_rich Low_complexity Low_complexity 1 45 0 245 98 24 0 chr3 212571186 212571227 -5465931 + (TTTTC)n Simple_repeat Simple_repeat 2 43 0 481 220 24 29 chr3 212573283 212573465 -5463693 + MIR SINE MIR 16 197 -62 371 272 96 0 chr3 212574303 212574439 -5462719 + L3 LINE CR1 1371 1519 -58 840 298 8 8 chr3 212574460 212574715 -5462443 - MIR SINE MIR -3 259 5 542 295 50 20 chr3 212575546 212575746 -5461412 + MIR SINE MIR 36 241 -21 586 310 18 22 chr3 212575767 212575957 -5461201 - MIR SINE MIR -61 147 3 194 321 112 22 chr3 212576208 212576342 -5460816 + MIR3 SINE MIR 39 184 -24 511 180 8 74 chr3 212576355 212576477 -5460681 - L2 LINE L2 0 3313 3200 277 307 80 15 chr3 212578415 212578552 -5458606 - MIR3 SINE MIR -5 203 58 279 177 0 48 chr3 212578663 212578725 -5458433 - L1M4 LINE L1 -1817 4329 4271 2170 126 10 0 chr3 212578738 212579040 -5458118 - AluSx SINE Alu -7 305 1 22 35 0 0 chr3 212579044 212579073 -5458085 + AT_rich Low_complexity Low_complexity 1 29 0 5400 183 37 10 chr3 212579073 212579250 -5457908 - L1MC2 LINE L1 -20 6307 6136 1981 36 28 16 chr3 212579250 212579496 -5457662 + L1PA4 LINE L1 5904 6155 0 5400 183 37 10 chr3 212579496 212580779 -5456379 - L1MC2 LINE L1 -191 6136 4808 1386 137 124 4 chr3 212580779 212581013 -5456145 - 7SLRNA srpRNA srpRNA -2 318 57 1196 193 56 63 chr3 212581013 212581402 -5455756 - L1MC2 LINE L1 -1307 4822 4321 2386 88 0 16 chr3 212581402 212581720 -5455438 - AluSq SINE Alu 0 313 1 1196 193 56 63 chr3 212581720 212581898 -5455260 - L1MC2 LINE L1 -1808 4321 4143 376 289 23 17 chr3 212582205 212582378 -5454780 - L1MC2 LINE L1 -4656 1654 1481 1085 193 0 0 chr3 212582402 212582573 -5454585 + FAM SINE Alu 1 171 -4 324 0 0 0 chr3 212582573 212582609 -5454549 + (TG)n Simple_repeat Simple_repeat 2 37 0 1175 228 25 115 chr3 212582610 212583177 -5453981 - L1MC2 LINE L1 -5096 1023 508 947 251 113 6 chr3 212583229 212583556 -5453602 - L1MC2 LINE L1 -5747 372 11 937 163 61 25 chr3 212583558 212583754 -5453404 - Charlie7 DNA MER1_type -802 1810 1608 332 194 65 19 chr3 212583967 212584075 -5453083 - Charlie7 DNA MER1_type -2472 140 28 * 478 273 15 15 chr3 212584070 212584202 -5452956 + MER20 DNA MER1_type 84 215 -4 2080 146 0 0 chr3 212585982 212586270 -5450888 - AluSx SINE Alu -24 288 1 350 234 113 8 chr3 212586300 212586343 -5450815 - MIR SINE MIR -34 228 191 2123 147 0 0 chr3 212586343 212586643 -5450515 + AluJo SINE Alu 1 300 -12 350 234 113 8 chr3 212586643 212586723 -5450435 - MIR SINE MIR -71 191 92 304 231 139 46 chr3 212587002 212587175 -5449983 + L1ME LINE L1 5645 5833 -288 798 213 6 18 chr3 212587269 212587438 -5449720 - MER97b DNA MER1_type? -886 167 1 4691 229 116 38 chr3 212587514 212589492 -5447666 - L1M LINE L1 -741 5421 3310 1310 121 52 4 chr3 212589492 212589845 -5447313 - MSTA LTR MaLR 0 428 1 3408 243 73 31 chr3 212589847 212591638 -5445520 - L1MEc LINE L1 -2834 3381 1667 2138 121 0 25 chr3 212591638 212591953 -5445205 - AluY SINE Alu -1 310 4 1904 169 0 22 chr3 212591957 212592271 -5444887 - AluJb SINE Alu -5 307 1 3408 243 73 31 chr3 212592271 212592779 -5444379 - L1MEc LINE L1 -4550 1665 1015 441 253 11 22 chr3 212593177 212593355 -5443803 - AluSq SINE Alu -133 180 5 744 239 36 59 chr3 212593478 212593600 -5443558 - L1MEc LINE L1 -5386 1010 887 1645 160 6 68 chr3 212593600 212593925 -5443233 - AluJo SINE Alu -7 305 1 744 239 36 59 chr3 212593925 212594108 -5443050 - L1MEc LINE L1 -5509 887 712 1870 273 22 13 chr3 212594133 212594675 -5442483 - L1MEc LINE L1 -5791 605 59 2223 117 50 14 chr3 212594677 212595036 -5442122 + THE1C LTR MaLR 1 372 -3 6405 185 25 70 chr3 212595042 212596472 -5440686 + THE1C-int LTR MaLR 3 1367 -284 2408 274 53 50 chr3 212596469 212597895 -5439263 - L1MEc LINE L1 -4294 2102 673 * 229 365 13 31 chr3 212598172 212598331 -5438827 - L1MEc LINE L1 -5951 445 290 408 326 22 6 chr3 212598365 212598546 -5438612 - L1MEc LINE L1 -6177 219 36 412 273 126 6 chr3 212599082 212599265 -5437893 + L2 LINE L2 3107 3311 -2 935 136 177 89 chr3 212599523 212599733 -5437425 - THE1C LTR MaLR 0 375 99 2244 90 0 33 chr3 212599733 212600032 -5437126 - AluSc SINE Alu -20 289 1 935 136 177 89 chr3 212600032 212600140 -5437018 - THE1C LTR MaLR -276 99 2 2068 100 57 7 chr3 212600389 212600670 -5436488 - AluY SINE Alu -16 295 1 192 364 32 58 chr3 212600705 212600859 -5436299 - MIR3 SINE MIR -34 174 25 296 278 86 33 chr3 212601092 212601243 -5435915 + MIR3 SINE MIR 4 162 -46 2438 28 7 14 chr3 212602056 212602380 -5434778 + AluY SINE Alu 1 322 0 726 265 142 58 chr3 212603082 212603288 -5433870 + L2 LINE L2 1559 1746 -1568 2125 112 3 13 chr3 212603288 212603593 -5433565 - AluSx SINE Alu -10 302 1 726 265 142 58 chr3 212603593 212603970 -5433188 + L2 LINE L2 1746 2191 -1123 22 0 0 0 chr3 212603975 212603997 -5433161 + AT_rich Low_complexity Low_complexity 1 22 0 1040 209 116 45 chr3 212604061 212604489 -5432669 - MLT1D LTR MaLR -8 497 1 1232 276 204 26 chr3 212604489 212605407 -5431751 + L2 LINE L2 2248 3306 -7 201 159 0 45 chr3 212605690 212605734 -5431424 - L2 LINE L2 -223 3049 3008 557 230 92 26 chr3 212607574 212607726 -5429432 + MIR SINE MIR 32 193 -69 262 260 67 29 chr3 212607990 212608094 -5429064 + L2 LINE L2 3160 3267 -5 1166 174 24 14 chr3 212608486 212608699 -5428459 + AluJo SINE Alu 78 292 -20 355 254 138 14 chr3 212609379 212609517 -5427641 + MIR3 SINE MIR 19 173 -35 2047 162 59 52 chr3 212609525 212609674 -5427484 + MSTA LTR MaLR 1 147 -281 2547 59 0 7 chr3 212609674 212609978 -5427180 - AluY SINE Alu -9 302 1 2047 162 59 52 chr3 212609978 212610253 -5426905 + MSTA LTR MaLR 147 428 0 2280 90 0 6 chr3 212610796 212611107 -5426051 - AluSq SINE Alu -4 309 1 271 289 93 70 chr3 212614091 212614308 -5422850 - MIR SINE MIR -28 234 3 234 180 0 0 chr3 212614705 212614766 -5422392 + (TTCA)n Simple_repeat Simple_repeat 4 64 0 290 293 153 38 chr3 212614940 212615097 -5422061 - MIR SINE MIR -70 192 18 378 268 134 0 chr3 212615319 212615431 -5421727 - MER5B DNA MER1_type -1 177 51 677 144 9 0 chr3 212617096 212617207 -5419951 - L1PA15 LINE L1 -17 6148 6037 373 169 15 0 chr3 212617234 212617299 -5419859 - L1PA15 LINE L1 -87 6078 6013 1484 199 24 14 chr3 212618759 212619046 -5418112 + AluJb SINE Alu 5 294 -8 242 243 21 132 chr3 212619710 212619854 -5417304 - MIR SINE MIR -61 147 20 307 312 83 45 chr3 212620092 212620249 -5416909 + L2 LINE L2 3115 3277 -36 198 118 0 0 chr3 212620255 212620289 -5416869 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 234 0 0 0 chr3 212621047 212621073 -5416085 + (CA)n Simple_repeat Simple_repeat 2 27 0 403 252 106 83 chr3 212621086 212621304 -5415854 + MIR SINE MIR 3 225 -37 714 250 23 11 chr3 212621924 212622100 -5415058 + MER5A DNA MER1_type 10 187 -2 2230 104 3 0 chr3 212622676 212622985 -5414173 - AluSg SINE Alu 0 310 1 212 328 0 0 chr3 212622995 212623059 -5414099 - L2 LINE L2 -1 3271 3208 275 324 143 9 chr3 212623146 212623251 -5413907 - L2 LINE L2 -5 3267 3149 588 286 158 69 chr3 212623345 212623831 -5413327 - L2 LINE L2 0 3313 2784 1097 147 90 19 chr3 212623837 212624048 -5413110 - AluJb SINE Alu -2 310 85 214 395 33 28 chr3 212624049 212624264 -5412894 - L2 LINE L2 -535 2779 2564 414 264 16 32 chr3 212625779 212625904 -5411254 + MIR SINE MIR 22 144 -64 379 289 31 44 chr3 212625919 212625954 -5411204 - MIR3 SINE MIR -18 190 156 1021 228 18 18 chr3 212625954 212626178 -5410980 + MER58A DNA MER1_type 1 224 0 379 289 31 44 chr3 212626178 212626301 -5410857 - MIR3 SINE MIR -52 156 34 701 165 50 8 chr3 212627304 212627425 -5409733 + L2 LINE L2 3187 3312 -1 498 217 174 67 chr3 212627737 212627871 -5409287 - MIR SINE MIR 0 262 144 2766 97 8 0 chr3 212627871 212628243 -5408915 + THE1C LTR MaLR 1 375 0 498 217 174 67 chr3 212628243 212628340 -5408818 - MIR SINE MIR -118 144 3 239 282 100 9 chr3 212628340 212628444 -5408714 + MIR3 SINE MIR 73 186 -22 2028 147 0 3 chr3 212629800 212630113 -5407045 - AluJo SINE Alu 0 312 1 494 311 0 8 chr3 212630236 212630368 -5406790 + MER5B DNA MER1_type 3 133 -45 1388 242 57 83 chr3 212630370 212630686 -5406472 - L1ME3A LINE L1 -5 6165 5842 1983 124 24 0 chr3 212630686 212630976 -5406182 + AluSx SINE Alu 1 297 -15 1388 242 57 83 chr3 212630976 212631048 -5406110 - L1ME3A LINE L1 -328 5842 5770 1543 221 55 9 chr3 212631048 212631396 -5405762 + MLT1A1 LTR MaLR 2 365 0 1388 242 57 83 chr3 212631396 212631481 -5405677 - L1ME3A LINE L1 -400 5770 5684 1566 167 16 41 chr3 212631481 212631799 -5405359 - AluJo SINE Alu -2 310 1 1388 242 57 83 chr3 212631799 212631950 -5405208 - L1ME3A LINE L1 -486 5684 5555 263 127 18 55 chr3 212631954 212632009 -5405149 - MER5B DNA MER1_type -121 57 5 327 305 70 88 chr3 212632168 212632509 -5404649 + L2 LINE L2 2927 3261 -11 746 267 76 58 chr3 212632610 212633088 -5404070 - MLT1H1 LTR MaLR -24 518 51 475 299 135 20 chr3 212633526 212633927 -5403231 + L1ME4a LINE L1 5675 6121 0 190 337 0 54 chr3 212634077 212634169 -5402989 + MIR3 SINE MIR 82 168 -40 313 306 69 35 chr3 212634185 212634358 -5402800 - MIR SINE MIR -50 212 34 272 328 128 43 chr3 212634364 212634599 -5402559 - L3 LINE CR1 -179 1398 1144 210 196 59 20 chr3 212634594 212634645 -5402513 - L3b LINE CR1 0 1583 1531 * 371 239 98 14 chr3 212635893 212636037 -5401121 - MIR SINE MIR -57 151 33 1081 211 52 0 chr3 212636766 212636979 -5400179 + MER58A DNA MER1_type 1 224 0 294 276 0 0 chr3 212637150 212637208 -5399950 + L2 LINE L2 3210 3267 -5 733 294 152 43 chr3 212637528 212637950 -5399208 + MLT2F LTR ERVL 3 470 -193 371 239 45 0 chr3 212637939 212638027 -5399131 + MLT2E LTR ERVL 529 620 -8 * 391 294 83 0 chr3 212638029 212638138 -5399020 + ERVL LTR ERVL 28 145 -5619 7967 271 52 44 chr3 212638348 212641167 -5395991 + ERVL LTR ERVL 392 3374 -2390 2194 110 0 10 chr3 212641167 212641477 -5395681 + AluSq SINE Alu 1 307 -6 7967 271 52 44 chr3 212641477 212641541 -5395617 + ERVL LTR ERVL 3374 3436 -2328 242 219 117 73 chr3 212641541 212641678 -5395480 + MLT2F LTR ERVL 429 571 -92 607 264 6 12 chr3 212641684 212641847 -5395311 + MLT2E LTR ERVL 467 628 0 353 263 125 44 chr3 212641860 212642020 -5395138 - MIR SINE MIR -58 204 32 2173 80 40 0 chr3 212642277 212642576 -5394582 - AluY SINE Alu 0 311 1 968 307 84 12 chr3 212643258 212643675 -5393483 + L1ME3A LINE L1 5476 5922 -248 361 291 106 17 chr3 212643932 212644111 -5393047 + L1ME3A LINE L1 5962 6156 -14 247 275 220 0 chr3 212644549 212644658 -5392500 - MIR SINE MIR -116 146 14 253 319 89 68 chr3 212645084 212645319 -5391839 + L2 LINE L2 2947 3186 -86 274 276 23 11 chr3 212646347 212646434 -5390724 - MIR3 SINE MIR -18 190 103 322 318 78 13 chr3 212646446 212646600 -5390558 + MER5A DNA MER1_type 20 183 -6 1346 99 30 5 chr3 212647652 212647854 -5389304 + L1PB1 LINE L1 5941 6147 -4 841 112 0 0 chr3 212647877 212647993 -5389165 + FLAM_C SINE Alu 9 124 -19 189 269 19 19 chr3 212648253 212648305 -5388853 + L3 LINE CR1 1520 1571 -6 207 274 178 34 chr3 212648613 212648759 -5388399 + L2 LINE L2 3098 3264 -8 246 222 175 56 chr3 212649883 212649971 -5387187 + L2 LINE L2 1634 1743 -1571 1469 244 19 8 chr3 212649971 212650332 -5386826 - MLT1A1 LTR MaLR 0 365 1 246 222 175 56 chr3 212650332 212650369 -5386789 + L2 LINE L2 1743 1774 -1540 291 387 12 6 chr3 212651635 212651808 -5385350 - L2 LINE L2 -290 2982 2809 23 0 0 0 chr3 212652526 212652549 -5384609 + GC_rich Low_complexity Low_complexity 1 23 0 233 198 183 32 chr3 212652793 212652919 -5384239 + L2 LINE L2 3125 3269 -3 278 272 103 29 chr3 212652981 212653117 -5384041 - MIR3 SINE MIR -55 153 8 321 304 82 19 chr3 212654354 212654512 -5382646 + MIR3 SINE MIR 33 200 -8 503 255 142 37 chr3 212654647 212654972 -5382186 + L1ME4a LINE L1 5761 6119 -2 25 0 0 0 chr3 212655028 212655053 -5382105 + AT_rich Low_complexity Low_complexity 1 25 0 239 294 158 27 chr3 212655322 212655468 -5381690 - MIR3 SINE MIR -10 198 34 201 331 50 58 chr3 212656111 212656353 -5380805 - L2 LINE L2 -214 3058 2819 270 316 0 13 chr3 212657057 212657133 -5380025 + MIR3 SINE MIR 105 179 -29 491 228 58 42 chr3 212658204 212658393 -5378765 - L1MC5 LINE L1 -54 7907 7716 2022 128 0 0 chr3 212658407 212658705 -5378453 - AluSx SINE Alu -14 298 1 275 329 12 0 chr3 212659485 212659567 -5377591 - L3 LINE CR1 -167 1410 1328 224 294 91 49 chr3 212659642 212659785 -5377373 - MIR SINE MIR -33 229 81 450 258 134 76 chr3 212660262 212660537 -5376621 - L1MC4a LINE L1 -1633 6175 5885 640 176 25 0 chr3 212660545 212660664 -5376494 - FLAM_C SINE Alu -10 133 12 1258 217 30 23 chr3 212660800 212661100 -5376058 + AluJo SINE Alu 1 302 -10 21 0 0 0 chr3 212661617 212661638 -5375520 + AT_rich Low_complexity Low_complexity 1 21 0 2360 76 0 0 chr3 212662234 212662537 -5374621 + AluSc SINE Alu 1 303 -6 1105 189 56 4 chr3 212662858 212663091 -5374067 + AluJo SINE Alu 54 298 -14 2036 108 0 0 chr3 212663092 212663371 -5373787 + AluSg SINE Alu 22 300 -10 979 142 0 16 chr3 212663371 212663554 -5373604 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 387 238 127 0 chr3 212664231 212664357 -5372801 + MLT1J LTR MaLR 1 142 -369 205 233 0 0 chr3 212664651 212664694 -5372464 + L3 LINE CR1 1420 1462 -115 477 356 11 5 chr3 212665255 212665443 -5371715 - MIR3 SINE MIR -11 197 9 218 304 81 61 chr3 212666387 212666535 -5370623 - MIR3 SINE MIR -36 172 22 388 286 83 108 chr3 212666947 212667356 -5369802 - L2 LINE L2 0 3272 2874 454 348 51 0 chr3 212667726 212667884 -5369274 - L3 LINE CR1 -1 1576 1411 253 351 83 19 chr3 212668119 212668303 -5368855 - MIR SINE MIR -54 208 17 192 40 0 0 chr3 212668412 212668437 -5368721 + (TG)n Simple_repeat Simple_repeat 1 25 0 211 129 0 0 chr3 212668832 212668863 -5368295 + MIR SINE MIR 118 148 -114 2155 81 3 3 chr3 212668970 212669254 -5367904 - AluSg SINE Alu -26 284 1 514 300 32 26 chr3 212669753 212669943 -5367215 + MIR SINE MIR 48 238 -24 204 255 0 0 chr3 212669924 212669971 -5367187 - L2 LINE L2 0 3272 3226 * 361 304 45 0 chr3 212670719 212670831 -5366327 - MIR3 SINE MIR -49 159 43 375 301 119 61 chr3 212672293 212672563 -5364595 + L2 LINE L2 2539 2792 -521 2174 96 3 0 chr3 212672563 212672865 -5364293 - AluSx SINE Alu -9 303 1 375 301 119 61 chr3 212672865 212673323 -5363835 + L2 LINE L2 2792 3309 -4 1865 123 4 0 chr3 212673362 212673630 -5363528 + AluSx SINE Alu 29 297 -15 988 178 0 0 chr3 212673630 212673799 -5363359 + AluSg/x SINE Alu 132 300 -10 236 321 62 12 chr3 212673905 212673986 -5363172 + MIR SINE MIR 32 116 -92 685 208 8 0 chr3 212674121 212674246 -5362912 + MER5A DNA MER1_type 1 126 -63 1048 104 92 0 chr3 212674249 212674413 -5362745 + AluSc SINE Alu 120 298 -11 248 133 0 44 chr3 212674414 212674459 -5362699 + MER5A DNA MER1_type 146 188 -1 360 0 0 0 chr3 212675227 212675267 -5361891 + (CA)n Simple_repeat Simple_repeat 2 41 0 1588 266 68 68 chr3 212675425 212676034 -5361124 - L2 LINE L2 0 3313 2705 2239 110 0 0 chr3 212676034 212676343 -5360815 + AluSg SINE Alu 1 309 -1 1588 266 68 68 chr3 212676343 212676733 -5360425 - L2 LINE L2 -608 2705 2316 183 306 102 41 chr3 212677638 212677736 -5359422 + MIR SINE MIR 43 146 -62 2864 247 44 44 chr3 212677758 212678516 -5358642 - L1M4 LINE L1 -2465 3681 2921 2069 129 3 0 chr3 212678516 212678827 -5358331 - AluSx SINE Alu 0 312 1 2864 247 44 44 chr3 212678827 212679199 -5357959 - L1M4 LINE L1 -3224 2922 2551 222 352 22 0 chr3 212679200 212679291 -5357867 + L2 LINE L2 2687 2779 -535 1114 142 90 19 chr3 212679292 212679503 -5357655 + AluJb SINE Alu 85 310 -2 607 294 106 81 chr3 212679509 212679995 -5357163 + L2 LINE L2 2784 3313 0 275 324 143 9 chr3 212680089 212680194 -5356964 + L2 LINE L2 3149 3267 -5 212 328 0 0 chr3 212680281 212680345 -5356813 + L2 LINE L2 3208 3271 -1 2230 104 3 0 chr3 212680355 212680664 -5356494 + AluSg SINE Alu 1 310 0 213 252 134 50 chr3 212681188 212681307 -5355851 + L2 LINE L2 3141 3269 -3 1285 33 0 0 chr3 212681917 212682070 -5355088 + L1PA5 LINE L1 6002 6154 0 240 222 16 143 chr3 212682294 212682420 -5354738 + MER5A DNA MER1_type 1 110 -79 * 252 253 0 76 chr3 212682349 212682428 -5354730 - MER5A DNA MER1_type -31 158 86 199 89 0 178 chr3 212682684 212682729 -5354429 - L2 LINE L2 0 3272 3236 598 168 23 53 chr3 212682977 212683108 -5354050 + L1MD3 LINE L1 7841 7967 -28 245 350 131 33 chr3 212683119 212683751 -5353407 - L2 LINE L2 -683 2631 1938 565 252 131 10 chr3 212683931 212684137 -5353021 + MIR SINE MIR 31 261 -1 2177 202 38 7 chr3 212684868 212685319 -5351839 - MLT1C LTR MaLR 0 467 3 230 358 27 99 chr3 212685334 212685748 -5351410 + L2 LINE L2 2842 3225 -47 225 179 51 128 chr3 212686153 212686231 -5350927 - L3 LINE CR1 -925 652 581 407 294 66 41 chr3 212686333 212686530 -5350628 - MIR3 SINE MIR -4 204 3 2191 87 3 19 chr3 212686828 212687139 -5350019 + AluSx SINE Alu 1 306 -6 245 242 97 0 chr3 212687825 212687887 -5349271 - L2 LINE L2 -90 3182 3115 416 292 46 62 chr3 212689281 212689476 -5347682 + MIR SINE MIR 9 200 -62 558 330 29 0 chr3 212691634 212691807 -5345351 + MER91A DNA MER1_type 8 185 -11 986 233 161 40 chr3 212691807 212692180 -5344978 - MER115 DNA AcHobo -1 692 275 556 340 59 0 chr3 212692282 212692485 -5344673 - MER115 DNA AcHobo -391 302 88 405 279 47 16 chr3 212692805 212692934 -5344224 + MIR SINE MIR 21 153 -55 2185 79 33 0 chr3 212692935 212693238 -5343920 + AluSp SINE Alu 1 313 0 192 333 29 0 chr3 212693262 212693331 -5343827 + MIR3 SINE MIR 138 208 0 571 259 80 19 chr3 212693363 212693525 -5343633 - MER5B DNA MER1_type -6 172 1 708 269 74 8 chr3 212694194 212694436 -5342722 - MIR SINE MIR -3 259 2 2366 77 0 0 chr3 212694879 212695190 -5341968 + AluY SINE Alu 1 311 0 416 285 160 14 chr3 212695713 212695857 -5341301 - MER5A DNA MER1_type -16 173 9 465 253 65 32 chr3 212696250 212696436 -5340722 - L2 LINE L2 -572 2742 2551 2257 225 38 12 chr3 212696680 212697258 -5339900 + L1ME1 LINE L1 4097 4689 -1457 3767 177 56 17 chr3 212697266 212697413 -5339745 - L1MB2 LINE L1 0 6171 6031 1753 118 0 94 chr3 212697413 212697742 -5339416 - AluJb SINE Alu -14 298 1 3767 177 56 17 chr3 212697742 212697961 -5339197 - L1MB2 LINE L1 -140 6031 5822 404 52 35 0 chr3 212697961 212698019 -5339139 + (TATG)n Simple_repeat Simple_repeat 3 62 0 3767 177 56 17 chr3 212698019 212698463 -5338695 - L1MB2 LINE L1 -349 5822 5327 3285 237 69 13 chr3 212698466 212699874 -5337284 + L1ME1 LINE L1 4680 6161 -5 223 336 91 29 chr3 212699979 212700220 -5336938 + L2 LINE L2 2034 2289 -1025 1937 103 3 14 chr3 212700451 212700758 -5336400 - AluSg SINE Alu 0 304 1 21 36 0 0 chr3 212700767 212700795 -5336363 + AT_rich Low_complexity Low_complexity 1 28 0 2969 230 27 51 chr3 212700795 212701684 -5335474 - L1ME2 LINE L1 -19 6145 5279 184 367 121 29 chr3 212701685 212701892 -5335266 + L2 LINE L2 2509 2734 -580 269 276 20 20 chr3 212702040 212702138 -5335020 + L2 LINE L2 2994 3091 -181 842 300 39 46 chr3 212702807 212703244 -5333914 - L3 LINE CR1 -4 1573 1140 255 200 50 60 chr3 212703426 212703526 -5333632 + L2 LINE L2 3174 3272 0 1347 66 118 28 chr3 212705828 212706039 -5331119 - MER30 DNA MER1_type 0 230 1 347 211 14 0 chr3 212706083 212706154 -5331004 + MIR SINE MIR 77 148 -60 360 0 0 0 chr3 212706188 212706228 -5330930 + (TG)n Simple_repeat Simple_repeat 2 41 0 205 205 0 0 chr3 212706228 212706267 -5330891 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 505 246 153 33 chr3 212706455 212706670 -5330488 - MIR SINE MIR -2 260 20 2119 103 27 0 chr3 212706851 212707151 -5330007 - AluSx SINE Alu -2 310 3 217 267 56 56 chr3 212708629 212708719 -5328439 + MIR3 SINE MIR 93 182 -26 244 336 118 17 chr3 212708739 212708858 -5328300 + MIR SINE MIR 22 152 -110 416 308 65 28 chr3 212708909 212709141 -5328017 - MIR SINE MIR -1 261 17 2243 91 0 7 chr3 212709251 212709552 -5327606 + AluSx SINE Alu 17 299 -13 295 296 210 43 chr3 212709633 212709866 -5327292 - L2 LINE L2 -345 2969 2698 195 310 117 87 chr3 212710263 212710699 -5326459 - L2 LINE L2 -13 3259 2811 2098 117 7 10 chr3 212711632 212711931 -5325227 + AluSg SINE Alu 1 298 -12 232 277 99 28 chr3 212712641 212712782 -5324376 + MIR3 SINE MIR 2 152 -56 289 305 58 25 chr3 212712792 212712926 -5324232 + MER5A DNA MER1_type 5 151 -38 2152 102 3 59 chr3 212712926 212713249 -5323909 + AluSp SINE Alu 1 305 -8 1211 243 35 46 chr3 212713545 212713915 -5323243 - MLT1A2 LTR MaLR -4 370 5 365 244 56 19 chr3 212714155 212714315 -5322843 + LTR67 LTR ERVL 392 557 0 698 293 57 60 chr3 212714316 212714651 -5322507 + L3 LINE CR1 1170 1503 -74 6590 82 25 0 chr3 212714658 212716012 -5321146 + L1PA10 LINE L1 4790 6164 -4 216 97 0 0 chr3 212716131 212716162 -5320996 + (GGGAA)n Simple_repeat Simple_repeat 5 35 0 237 171 133 99 chr3 212716200 212716381 -5320777 - L1ME4a LINE L1 -3 6118 5932 * 3635 169 24 55 chr3 212716364 212717243 -5319915 - L1MB8 LINE L1 -12 6166 5315 756 221 14 7 chr3 212717257 212717402 -5319756 - FRAM SINE Alu -33 143 1 548 154 0 0 chr3 212717416 212717494 -5319664 - AluJ/FLAM SINE Alu -232 80 3 1568 201 5 5 chr3 212717494 212717863 -5319295 - L1MB8 LINE L1 -813 5333 4965 811 223 116 38 chr3 212717866 212718158 -5319000 - MLT1C LTR MaLR -142 325 11 423 264 16 32 chr3 212719822 212719947 -5317211 + MIR SINE MIR 22 144 -64 381 289 31 44 chr3 212719962 212719997 -5317161 - MIR3 SINE MIR -18 190 156 1044 228 18 18 chr3 212719997 212720221 -5316937 + MER58A DNA MER1_type 1 224 0 381 289 31 44 chr3 212720221 212720344 -5316814 - MIR3 SINE MIR -52 156 34 700 165 50 8 chr3 212721347 212721468 -5315690 + L2 LINE L2 3187 3312 -1 491 217 174 67 chr3 212721780 212721914 -5315244 - MIR SINE MIR 0 262 144 2786 97 8 0 chr3 212721914 212722286 -5314872 + THE1C LTR MaLR 1 375 0 491 217 174 67 chr3 212722286 212722383 -5314775 - MIR SINE MIR -118 144 3 241 282 100 9 chr3 212722383 212722487 -5314671 + MIR3 SINE MIR 73 186 -22 2172 150 0 3 chr3 212723843 212724156 -5313002 - AluJo SINE Alu 0 312 1 303 278 63 24 chr3 212724525 212724651 -5312507 - LTR67 LTR ERVL -17 540 410 684 0 0 0 chr3 212725495 212725571 -5311587 + (GGAA)n Simple_repeat Simple_repeat 4 79 0 209 241 37 0 chr3 212726840 212726894 -5310264 + L2 LINE L2 3258 3313 0 425 19 19 0 chr3 212727084 212727138 -5310020 + (TTATA)n Simple_repeat Simple_repeat 2 56 0 269 324 79 85 chr3 212728156 212728474 -5308684 - L2 LINE L2 -96 3176 2861 549 215 43 43 chr3 212728561 212728724 -5308434 - MLT1J2 LTR MaLR -5 445 283 408 271 41 41 chr3 212728725 212728847 -5308311 + MIR SINE MIR 68 189 -73 250 321 0 61 chr3 212728877 212729008 -5308150 - MIR SINE MIR -1 261 139 911 311 76 35 chr3 212729056 212729452 -5307706 + L2 LINE L2 2896 3307 -6 232 279 0 16 chr3 212731726 212731787 -5305371 + GA-rich Low_complexity Low_complexity 2 61 0 269 208 123 38 chr3 212732265 212732371 -5304787 - MIR3 SINE MIR -87 121 7 2266 124 0 0 chr3 212732649 212732955 -5304203 + AluSg SINE Alu 1 306 -4 2380 205 33 39 chr3 212733858 212734472 -5302686 - L1ME2 LINE L1 0 6164 5555 250 345 9 9 chr3 212734606 212734716 -5302442 + MIR3 SINE MIR 99 208 0 557 284 161 41 chr3 212734827 212735243 -5301915 - MLT1L LTR MaLR 0 615 150 1028 288 59 41 chr3 212735527 212736014 -5301144 + MLT1H LTR MaLR 1 537 -12 261 256 22 148 chr3 212736091 212736314 -5300844 - L3 LINE CR1 -142 1435 1241 188 285 83 69 chr3 212736821 212736965 -5300193 + L2 LINE L2 3114 3259 -13 206 321 0 0 chr3 212738144 212738200 -5298958 - MIR SINE MIR -66 142 87 403 268 0 104 chr3 212738584 212738748 -5298410 - MIR3 SINE MIR -9 199 53 236 285 179 7 chr3 212738997 212739139 -5298019 - MER5A DNA MER1_type -6 183 6 192 276 69 0 chr3 212739360 212739418 -5297740 - MIR SINE MIR -117 145 84 1986 122 42 3 chr3 212739659 212739946 -5297212 - AluJb SINE Alu -14 298 1 403 265 175 28 chr3 212739978 212740300 -5296858 + L2 LINE L2 2673 3059 -254 309 331 45 15 chr3 212740330 212740463 -5296695 - MIR3 SINE MIR -71 137 1 182 354 71 10 chr3 212740490 212740589 -5296569 + MIR3 SINE MIR 50 154 -54 1193 247 33 22 chr3 212740698 212741227 -5295931 - MER69B DNA AcHobo -5 1221 646 2215 107 27 0 chr3 212741388 212741688 -5295470 - AluSx SINE Alu -2 310 3 225 344 11 11 chr3 212743166 212743256 -5293902 + MIR3 SINE MIR 93 182 -26 247 336 118 17 chr3 212743276 212743395 -5293763 + MIR SINE MIR 22 152 -110 370 291 73 33 chr3 212743446 212743677 -5293481 - MIR SINE MIR -1 261 17 2367 90 0 7 chr3 212743787 212744087 -5293071 + AluSx SINE Alu 1 298 -14 295 296 210 43 chr3 212744168 212744401 -5292757 - L2 LINE L2 -345 2969 2698 212 312 115 85 chr3 212744795 212745231 -5291927 - L2 LINE L2 -13 3259 2811 2107 116 7 10 chr3 212746166 212746467 -5290691 + AluSg SINE Alu 1 300 -10 720 223 146 34 chr3 212746499 212746732 -5290426 - MIR SINE MIR 0 262 4 423 286 138 56 chr3 212747027 212747258 -5289900 + MIR SINE MIR 11 260 -2 1973 125 0 4 chr3 212747288 212747560 -5289598 + AluSc SINE Alu 31 301 -8 198 0 0 0 chr3 212747610 212747632 -5289526 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 377 317 124 38 chr3 212748013 212748407 -5288751 - L2 LINE L2 -58 3255 2828 257 91 0 0 chr3 212748472 212748505 -5288653 - L2 LINE L2 -18 3254 3222 200 311 0 16 chr3 212749030 212749091 -5288067 - L2 LINE L2 -3 3269 3210 344 250 42 21 chr3 212749785 212749881 -5287277 + MIR SINE MIR 46 143 -65 1770 188 38 12 chr3 212750900 212751240 -5285918 - MLT1A1 LTR MaLR 0 365 17 454 264 80 30 chr3 212751437 212751638 -5285520 - LTR16C LTR ERVL 0 491 281 263 286 0 14 chr3 212752021 212752091 -5285067 + GA-rich Low_complexity Low_complexity 4 72 0 2514 70 0 0 chr3 212752197 212752495 -5284663 + AluY SINE Alu 1 298 -13 433 280 84 62 chr3 212752589 212753144 -5284014 - L1ME4a LINE L1 -104 6017 5439 1831 164 7 7 chr3 212753144 212753436 -5283722 + AluJo SINE Alu 1 292 -20 433 280 84 62 chr3 212753436 212753541 -5283617 - L1ME4a LINE L1 -682 5439 5338 265 271 104 0 chr3 212753996 212754092 -5283066 + MER81 DNA DNA 3 108 -6 488 285 35 66 chr3 212754093 212754349 -5282809 - L2 LINE L2 -503 2811 2564 288 261 62 93 chr3 212754388 212754645 -5282513 - L2 LINE L2 -894 2420 2172 1640 112 0 40 chr3 212755053 212755302 -5281856 + AluSx SINE Alu 61 299 -13 184 271 0 21 chr3 212755709 212755757 -5281401 - L3b LINE CR1 -355 1228 1182 188 349 16 0 chr3 212755789 212755852 -5281306 - MIR SINE MIR -151 111 48 2231 119 6 0 chr3 212757812 212758123 -5279035 + AluSq SINE Alu 1 313 0 718 242 103 31 chr3 212758485 212758679 -5278479 + MER3 DNA MER1_type 2 209 0 934 177 33 0 chr3 212759194 212759375 -5277783 + MER5A DNA MER1_type 1 187 -2 4132 151 17 29 chr3 212759753 212759927 -5277231 + MER50 LTR ERV1 1 176 -558 2517 83 0 3 chr3 212759927 212760239 -5276919 + AluY SINE Alu 1 311 0 4132 151 17 29 chr3 212760239 212760784 -5276374 + MER50 LTR ERV1 176 711 -23 272 235 242 15 chr3 212761174 212761306 -5275852 + MIR SINE MIR 95 256 -6 918 226 19 68 chr3 212761334 212761599 -5275559 + MIR SINE MIR 11 262 0 590 256 71 18 chr3 212762626 212762794 -5274364 + MER5B DNA MER1_type 1 177 -1 1657 81 9 0 chr3 212763030 212763252 -5273906 + L1PA8 LINE L1 5931 6154 -18 39 22 0 0 chr3 212763252 212763298 -5273860 + AT_rich Low_complexity Low_complexity 1 46 0 419 81 32 81 chr3 212763298 212763483 -5273675 + (TTATA)n Simple_repeat Simple_repeat 5 180 0 355 237 86 54 chr3 212763492 212763713 -5273445 + L1MCa LINE L1 1980 6244 -157 2283 187 45 18 chr3 212763718 212764227 -5272931 - L1MB3 LINE L1 -19 6164 5642 892 239 32 92 chr3 212764481 212764828 -5272330 + MER102b DNA MER1_type 1 326 -15 321 351 13 20 chr3 212764844 212764995 -5272163 - MIR3 SINE MIR -48 160 11 1159 190 15 99 chr3 212764995 212765337 -5271821 - L1ME1 LINE L1 -6 6160 5848 817 163 23 12 chr3 212765390 212765562 -5271596 - L1ME1 LINE L1 -299 5867 5694 2286 87 0 0 chr3 212765782 212766081 -5271077 + AluY SINE Alu 1 299 -12 2347 72 0 0 chr3 212766287 212766580 -5270578 + AluY SINE Alu 1 293 -18 1179 226 39 16 chr3 212766582 212766888 -5270270 - L1ME1 LINE L1 -469 5693 5381 412 265 39 64 chr3 212767149 212767432 -5269726 - L1MB3 LINE L1 -2268 5540 5265 407 308 49 27 chr3 212767515 212767700 -5269458 - L1MB3 LINE L1 -948 5198 5010 2443 53 0 3 chr3 212767710 212768010 -5269148 - AluY SINE Alu -12 299 1 990 149 46 6 chr3 212768010 212768184 -5268974 - MER50 LTR ERV1 -553 181 1 905 182 33 0 chr3 212768562 212768743 -5268415 - MER5A DNA MER1_type -2 187 1 700 242 103 31 chr3 212769258 212769452 -5267706 - MER3 DNA MER1_type 0 209 2 592 270 45 22 chr3 212769644 212769822 -5267336 - MER69 DNA AcHobo -948 278 97 406 295 36 14 chr3 212771188 212771327 -5265831 + MIR3 SINE MIR 40 181 -27 847 149 18 214 chr3 212771458 212771794 -5265364 - L1ME1 LINE L1 -204 5966 5694 2144 87 0 3 chr3 212772014 212772300 -5264858 + AluY SINE Alu 1 285 -26 211 129 0 0 chr3 212772407 212772438 -5264720 - MIR SINE MIR -114 148 118 192 40 0 0 chr3 212772833 212772858 -5264300 + (CA)n Simple_repeat Simple_repeat 1 25 0 223 354 82 12 chr3 212772967 212773093 -5264065 + MIR SINE MIR 17 147 -65 453 348 51 0 chr3 212773386 212773544 -5263614 + L3 LINE CR1 1411 1576 -1 281 242 115 93 chr3 212773914 212774096 -5263062 + L2 LINE L2 2874 3059 -213 23501 90 3 8 chr3 212774303 212777430 -5259728 + HERVL LTR ERVL 296 3409 -2245 194 274 0 65 chr3 212778366 212778428 -5258730 - MIR SINE MIR -3 259 202 194 328 16 31 chr3 212779271 212779335 -5257823 - MIR SINE MIR -151 111 49 752 129 0 0 chr3 212779376 212779492 -5257666 + AluSq/x SINE Alu 2 117 -195 271 123 14 14 chr3 212779793 212779866 -5257292 + T-rich Low_complexity Low_complexity 4 76 0 316 342 86 35 chr3 212779867 212780124 -5257034 - L1M3c LINE L1 -4683 1458 1189 789 72 0 9 chr3 212781737 212781848 -5255310 + AluSg/x SINE Alu 203 312 0 1685 142 19 4 chr3 212781919 212782186 -5254972 + AluSq SINE Alu 1 271 -42 1163 288 59 41 chr3 212782342 212782829 -5254329 + MLT1H LTR MaLR 1 537 -12 233 250 40 149 chr3 212782906 212783134 -5254024 - L3 LINE CR1 -142 1435 1233 396 0 0 0 chr3 212784712 212784756 -5252402 + (CA)n Simple_repeat Simple_repeat 2 45 0 371 245 142 85 chr3 212784775 212784987 -5252171 + MIR SINE MIR 2 225 -37 875 229 17 0 chr3 212785607 212785782 -5251376 + MER5A DNA MER1_type 10 187 -2 308 298 18 26 chr3 212786024 212786138 -5251020 - LTR67 LTR ERVL -17 540 428 3023 241 34 31 chr3 212786408 212788238 -5248920 - L1ME2 LINE L1 -149 6015 4191 1135 127 5 5 chr3 212788569 212788758 -5248400 + AluSx SINE Alu 1 189 -123 2462 17 41 0 chr3 212790084 212790378 -5246780 - AluY SINE Alu -5 306 1 668 263 136 5 chr3 212790379 212790577 -5246581 - MIR SINE MIR -4 258 35 282 342 25 40 chr3 212790746 212790945 -5246213 - MIR SINE MIR -47 215 20 479 311 14 50 chr3 212791174 212791396 -5245762 - MIR SINE MIR -1 261 48 335 259 145 38 chr3 212792505 212792636 -5244522 - L2 LINE L2 0 3313 3169 25327 73 3 5 chr3 212792641 212795814 -5241344 + HERVL LTR ERVL 260 3427 -2227 469 264 101 17 chr3 212797675 212797853 -5239305 + MIR SINE MIR 2 194 -68 2139 106 0 0 chr3 212798981 212799282 -5237876 + AluSx SINE Alu 1 301 -11 271 254 0 0 chr3 212799295 212799354 -5237804 + MIR SINE MIR 91 149 -59 203 164 0 146 chr3 212799756 212799811 -5237347 + MIR SINE MIR 103 149 -59 2273 83 0 0 chr3 212800259 212800561 -5236597 + AluSx SINE Alu 1 302 -10 468 286 6 54 chr3 212800724 212800892 -5236266 - MLT1J2 LTR MaLR -288 162 3 347 268 102 7 chr3 212803796 212803961 -5233197 - MIR3 SINE MIR -4 204 22 2859 137 27 11 chr3 212804339 212804814 -5232344 - L1PA16 LINE L1 -1 6165 5683 293 280 59 8 chr3 212804846 212804964 -5232194 - MIR SINE MIR -111 151 28 2016 85 4 4 chr3 212805364 212805636 -5231522 + AluSq SINE Alu 1 272 -41 230 281 101 0 chr3 212805917 212806056 -5231102 + L1M2 LINE L1 570 722 -6487 940 209 137 22 chr3 212806075 212806353 -5230805 + L1M2 LINE L1 482 791 -6418 257 257 59 59 chr3 212806353 212806454 -5230704 + L1M2 LINE L1 700 800 -6409 1128 217 18 0 chr3 212806458 212806675 -5230483 + L1M2 LINE L1 1715 1935 -5274 * 5087 186 90 10 chr3 212806647 212806866 -5230292 + L1M2 LINE L1 2186 2386 -4822 270 0 0 0 chr3 212806866 212806896 -5230262 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 5087 186 90 10 chr3 212806896 212809033 -5228125 + L1M2 LINE L1 2386 4735 -2473 2645 158 13 5 chr3 212809170 212809619 -5227539 + L1 LINE L1 3457 3909 -2237 3141 124 16 2 chr3 212809633 212810132 -5227026 + L1MA5 LINE L1 5779 6284 -16 350 273 41 88 chr3 212810366 212810560 -5226598 - MIR SINE MIR -70 192 8 464 248 28 35 chr3 212812610 212812755 -5224403 + MIR SINE MIR 119 262 0 219 114 0 0 chr3 212812957 212812992 -5224166 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2223 85 0 0 chr3 212812994 212813275 -5223883 - AluSq SINE Alu -32 281 1 265 243 81 73 chr3 212814455 212814645 -5222513 + MIR SINE MIR 20 210 -52 320 206 175 10 chr3 212814777 212814874 -5222284 + MLT1C LTR MaLR 1 113 -354 1365 190 42 45 chr3 212814968 212815019 -5222139 + MLT1C LTR MaLR 132 182 -285 2077 121 0 6 chr3 212815019 212815333 -5221825 + AluSx SINE Alu 1 312 0 1365 190 42 45 chr3 212815333 212815618 -5221540 + MLT1C LTR MaLR 182 467 0 235 292 0 15 chr3 212816114 212816179 -5220979 + MIR SINE MIR 20 83 -125 1684 259 40 30 chr3 212818536 212819165 -5217993 - L1M4 LINE L1 -1404 4742 4108 716 300 34 16 chr3 212819507 212819830 -5217328 - L1MEc LINE L1 -6028 368 40 331 39 58 0 chr3 212819990 212820042 -5217116 + (CAAA)n Simple_repeat Simple_repeat 3 57 0 230 311 118 0 chr3 212820160 212820295 -5216863 - MER103 DNA DNA 0 166 16 955 274 117 17 chr3 212821278 212821636 -5215522 - L2 LINE L2 0 3313 2920 408 315 17 51 chr3 212821650 212821828 -5215330 - MER5B DNA MER1_type 0 178 7 525 257 42 28 chr3 212821834 212821978 -5215180 - MIR3 SINE MIR -48 160 15 876 233 57 5 chr3 212822076 212822269 -5214889 - MIR SINE MIR 0 262 60 219 304 14 14 chr3 212822724 212822793 -5214365 - L2 LINE L2 -47 3225 3157 2071 138 0 0 chr3 212823040 212823352 -5213806 - AluSx SINE Alu 0 312 1 23 54 0 0 chr3 212823570 212823607 -5213551 + AT_rich Low_complexity Low_complexity 1 37 0 919 128 0 0 chr3 212823609 212823742 -5213416 - FLAM_C SINE Alu -10 133 1 697 187 26 19 chr3 212824104 212824259 -5212899 - MER63C DNA MER1_type 0 931 776 485 155 113 31 chr3 212824260 212824357 -5212801 + FLAM_A SINE Alu 16 120 -22 3361 215 26 22 chr3 212824366 212825022 -5212136 - MER63C DNA MER1_type -253 807 146 2104 210 43 64 chr3 212825022 212825585 -5211573 + MLT2B3 LTR ERVL 4 554 0 3361 215 26 22 chr3 212825585 212825732 -5211426 - MER63C DNA MER1_type -914 146 1 576 270 126 0 chr3 212826054 212826228 -5210930 + L2 LINE L2 2840 3035 -278 2976 108 30 5 chr3 212826237 212826670 -5210488 - MLT2A1 LTR ERVL 0 444 1 3588 81 6 12 chr3 212826670 212827166 -5209992 - HERVL-A1 LTR ERVL 0 5654 5162 881 170 0 47 chr3 212827277 212827448 -5209710 + AluJb SINE Alu 106 268 -44 649 261 229 50 chr3 212827461 212827924 -5209234 - L2 LINE L2 -172 3141 2547 1971 94 49 3 chr3 212827924 212828211 -5208947 + AluSg SINE Alu 1 300 -10 649 261 229 50 chr3 212828211 212828303 -5208855 - L2 LINE L2 -766 2547 2473 182 317 92 40 chr3 212828855 212829104 -5208054 - L2 LINE L2 -94 3178 2917 287 242 45 76 chr3 212829677 212829809 -5207349 - MIR SINE MIR -45 217 90 357 260 79 31 chr3 212829938 212830065 -5207093 - MIR SINE MIR -55 207 75 522 115 26 0 chr3 212830065 212830143 -5207015 + MADE1 DNA Mariner 1 80 0 933 167 83 17 chr3 212830171 212830376 -5206782 - MIR SINE MIR -6 256 44 2362 85 0 0 chr3 212830487 212830794 -5206364 - AluSc SINE Alu -2 307 1 1933 91 52 36 chr3 212831630 212831938 -5205220 + AluSp SINE Alu 1 313 0 919 273 41 2 chr3 212832008 212832257 -5204901 + MIR SINE MIR 9 262 0 219 114 0 0 chr3 212832572 212832607 -5204551 + (CCCCAG)n Simple_repeat Simple_repeat 6 40 0 258 279 0 0 chr3 212832847 212832915 -5204243 + G-rich Low_complexity Low_complexity 1 68 0 271 271 143 43 chr3 212833536 212833676 -5203482 - MIR SINE MIR -46 216 63 231 152 197 15 chr3 212833877 212833943 -5203215 + MIR3 SINE MIR 112 189 -19 2213 94 0 0 chr3 212833979 212834278 -5202880 + AluSx SINE Alu 1 299 -13 990 167 0 11 chr3 212834278 212834458 -5202700 + AluJb SINE Alu 134 311 -1 348 267 81 37 chr3 212834829 212834990 -5202168 + L2 LINE L2 2947 3114 -158 571 333 9 19 chr3 212835005 212835221 -5201937 + MIR SINE MIR 12 225 -37 2082 87 0 0 chr3 212835547 212835823 -5201335 + AluSx SINE Alu 20 295 -17 331 266 156 8 chr3 212837005 212837133 -5200025 + MIR3 SINE MIR 39 185 -23 2202 98 0 0 chr3 212837704 212838010 -5199148 + AluSg SINE Alu 1 306 -4 881 290 74 15 chr3 212840072 212840404 -5196754 + MLT1I LTR MaLR 63 401 -8 1989 172 44 26 chr3 212840529 212841061 -5196097 + MLT2A2 LTR ERVL 1 554 0 919 222 149 79 chr3 212841140 212841428 -5195730 + MLT1C LTR MaLR 8 337 -130 2301 77 0 0 chr3 212841428 212841726 -5195432 + AluSp SINE Alu 1 298 -15 919 222 149 79 chr3 212841726 212841865 -5195293 + MLT1C LTR MaLR 337 465 -2 1368 221 83 26 chr3 212843801 212844250 -5192908 + L1MD3 LINE L1 6911 7333 -662 1838 143 6 16 chr3 212844250 212844565 -5192593 + AluJb SINE Alu 1 312 0 1368 221 83 26 chr3 212844565 212845074 -5192084 + L1MD3 LINE L1 7333 7987 -8 216 135 0 0 chr3 212845686 212845723 -5191435 + (TCCC)n Simple_repeat Simple_repeat 3 39 0 2126 108 10 0 chr3 212846118 212846424 -5190734 - AluY SINE Alu -2 309 1 212 310 0 0 chr3 212846572 212846630 -5190528 + (CA)n Simple_repeat Simple_repeat 1 58 0 323 78 20 0 chr3 212846945 212846996 -5190162 + (CA)n Simple_repeat Simple_repeat 1 52 0 185 244 0 141 chr3 212848110 212848188 -5188970 - L3 LINE CR1 -4 1573 1507 1170 138 32 81 chr3 212848679 212848925 -5188233 - MLT1B LTR MaLR 0 390 157 1031 107 0 0 chr3 212848933 212849083 -5188075 + AluSc SINE Alu 155 304 -5 859 186 6 6 chr3 212849083 212849239 -5187919 - MLT1B LTR MaLR -234 156 1 981 197 81 63 chr3 212849485 212849769 -5187389 - MER33 DNA MER1_type -9 315 27 203 163 41 41 chr3 212850700 212850749 -5186409 - MIR SINE MIR -61 201 153 208 221 191 0 chr3 212851516 212851584 -5185574 - MIR SINE MIR 0 262 182 248 223 245 11 chr3 212851749 212851843 -5185315 - MIR3 SINE MIR -41 167 52 516 253 41 20 chr3 212852116 212852262 -5184896 + MIR SINE MIR 112 260 -2 608 254 28 22 chr3 212852373 212852554 -5184604 - MER5A DNA MER1_type -1 188 7 1903 124 7 3 chr3 212853199 212853504 -5183654 - AluSx SINE Alu 0 306 1 817 214 93 131 chr3 212853747 212854108 -5183050 + MLT1C LTR MaLR 54 398 -69 1896 119 7 7 chr3 212854108 212854426 -5182732 - AluSc SINE Alu 0 309 1 817 214 93 131 chr3 212854426 212854485 -5182673 + MLT1C LTR MaLR 398 458 -9 268 330 68 0 chr3 212854706 212854794 -5182364 + MLT1K LTR MaLR 42 135 -453 234 0 0 0 chr3 212855090 212855116 -5182042 + (CA)n Simple_repeat Simple_repeat 2 27 0 2024 100 6 35 chr3 212857367 212857678 -5179480 + AluSx SINE Alu 1 302 -10 935 166 0 3 chr3 212857948 212858264 -5178894 + (TG)n Simple_repeat Simple_repeat 1 315 0 234 361 0 21 chr3 212858366 212858463 -5178695 + L2 LINE L2 2785 2879 -435 257 313 44 41 chr3 212858813 212859073 -5178085 + MLT1K LTR MaLR 207 490 -125 343 328 103 52 chr3 212859153 212859443 -5177715 - L2 LINE L2 -64 3208 2904 310 188 203 0 chr3 212859787 212859856 -5177302 - MER82 DNA MER2_type -1 652 570 557 115 13 0 chr3 212859861 212859939 -5177219 - MER66B LTR ERV1 0 486 408 2549 84 3 0 chr3 212862683 212862993 -5174165 - AluSq SINE Alu -2 311 1 420 248 8 23 chr3 212863795 212863924 -5173234 - MER103 DNA DNA 0 166 40 217 404 9 9 chr3 212864643 212864757 -5172401 + L2 LINE L2 2597 2710 -604 2466 86 0 0 chr3 212865451 212865755 -5171403 + AluSq SINE Alu 1 304 -9 314 258 75 11 chr3 212866937 212867030 -5170128 - L3 LINE CR1 -362 1215 1117 252 0 0 0 chr3 212867128 212867156 -5170002 + (CA)n Simple_repeat Simple_repeat 1 28 0 313 322 9 34 chr3 212867857 212868027 -5169131 - MIR SINE MIR -56 206 41 870 263 29 9 chr3 212868833 212869086 -5168072 + MIR SINE MIR 4 262 0 512 317 55 0 chr3 212869091 212869274 -5167884 - MIR SINE MIR -62 200 8 324 0 0 0 chr3 212869312 212869348 -5167810 + (CA)n Simple_repeat Simple_repeat 2 37 0 391 248 153 19 chr3 212869497 212869654 -5167504 - L1MC4 LINE L1 0 8042 7865 883 227 101 50 chr3 212869798 212870166 -5166992 + MLT1C LTR MaLR 93 465 -2 400 303 42 12 chr3 212871012 212871177 -5165981 - MER112 DNA MER1_type -11 249 80 233 94 0 0 chr3 212871187 212871219 -5165939 + MER47A DNA MER2_type 311 342 -24 406 231 0 0 chr3 212871228 212871306 -5165852 - MER47A DNA MER2_type -287 79 2 326 229 12 12 chr3 212871306 212871388 -5165770 - MER112 DNA MER1_type -178 82 1 2233 64 0 79 chr3 212871634 212871963 -5165195 - AluY SINE Alu -8 303 1 1950 115 7 4 chr3 212872373 212872642 -5164516 + AluSx SINE Alu 1 270 -42 302 0 26 0 chr3 212872643 212872681 -5164477 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 369 324 113 14 chr3 212872759 212872901 -5164257 + MIR SINE MIR 22 177 -85 303 93 0 0 chr3 212873164 212873207 -5163951 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 661 284 78 33 chr3 212873639 212874154 -5163004 + L1ME4a LINE L1 5320 5857 -264 290 269 173 6 chr3 212874184 212874340 -5162818 + L1ME4a LINE L1 5931 6112 -9 230 236 36 0 chr3 212874590 212874645 -5162513 + LTR16A1 LTR ERVL 63 119 -338 936 176 122 58 chr3 212876128 212876416 -5160742 - MSTC LTR MaLR 0 428 80 2474 91 0 0 chr3 212876416 212876725 -5160433 - AluY SINE Alu -2 309 1 936 176 122 58 chr3 212876725 212876811 -5160347 - MSTC LTR MaLR -348 80 1 927 182 0 0 chr3 212876979 212877127 -5160031 - FAM SINE Alu -26 159 12 444 189 22 0 chr3 212877720 212877810 -5159348 + MER58B DNA MER1_type 250 341 0 1388 213 36 7 chr3 212877991 212878292 -5158866 - MER66B LTR ERV1 -176 310 1 2620 212 11 14 chr3 212878295 212878856 -5158302 - MER82 DNA MER2_type -88 565 7 2365 113 0 0 chr3 212878858 212879167 -5157991 + AluSx SINE Alu 1 309 -3 1062 260 70 35 chr3 212879235 212879666 -5157492 - MLT1J1 LTR MaLR 0 446 1 661 266 112 17 chr3 212880546 212880779 -5156379 - MIR SINE MIR 0 262 8 2360 104 3 0 chr3 212881413 212881711 -5155447 - AluSx SINE Alu -13 299 1 323 303 31 97 chr3 212882441 212882636 -5154522 + MIR3 SINE MIR 18 199 -9 272 267 286 9 chr3 212884300 212884405 -5152753 + MER5B DNA MER1_type 2 135 -43 333 296 121 8 chr3 212884410 212884542 -5152616 - MIR3 SINE MIR -48 160 14 490 304 58 23 chr3 212884572 212884743 -5152415 - MER5B DNA MER1_type -1 177 1 841 208 49 16 chr3 212885080 212885263 -5151895 - MER5A DNA MER1_type 0 189 1 809 175 81 6 chr3 212886044 212886204 -5150954 + MER5B DNA MER1_type 1 172 -6 491 254 22 0 chr3 212886860 212886994 -5150164 - MER69A DNA AcHobo 0 177 41 849 290 45 5 chr3 212887510 212887731 -5149427 - MIR SINE MIR -9 253 24 300 305 76 84 chr3 212887731 212887976 -5149182 - L2 LINE L2 -371 2943 2700 2161 108 14 0 chr3 212887976 212888264 -5148894 + AluSx SINE Alu 1 292 -20 300 305 76 84 chr3 212888264 212888362 -5148796 - L2 LINE L2 -614 2700 2603 397 294 12 14 chr3 212888490 212888673 -5148485 + MIR SINE MIR 28 206 -56 260 331 30 82 chr3 212888811 212889047 -5148111 + L2 LINE L2 2960 3176 -96 2364 97 0 3 chr3 212889047 212889358 -5147800 - AluSq SINE Alu -3 310 1 260 331 30 82 chr3 212889358 212889450 -5147708 + L2 LINE L2 3176 3271 -1 440 240 140 51 chr3 212890469 212890575 -5146583 - L1ME4a LINE L1 -12 6109 6014 435 83 0 0 chr3 212890575 212890635 -5146523 + (TA)n Simple_repeat Simple_repeat 2 61 0 2111 120 33 0 chr3 212890635 212890935 -5146223 - AluSx SINE Alu -2 310 1 440 240 140 51 chr3 212890935 212891198 -5145960 - L1ME4a LINE L1 -106 6015 5706 2128 112 34 3 chr3 212891944 212892239 -5144919 + AluSp SINE Alu 1 304 -9 183 129 0 0 chr3 212892771 212892802 -5144356 + (G)n Simple_repeat Simple_repeat 1 31 0 189 74 0 0 chr3 212892846 212892873 -5144285 + (G)n Simple_repeat Simple_repeat 1 27 0 256 199 38 46 chr3 212893265 212893396 -5143762 + (CGGG)n Simple_repeat Simple_repeat 3 132 0 909 235 18 60 chr3 212893590 212893807 -5143351 - MER63A DNA MER1_type 0 210 3 246 128 0 0 chr3 212893812 212893851 -5143307 + (CATA)n Simple_repeat Simple_repeat 2 40 0 539 260 95 54 chr3 212893887 212894129 -5143029 + LTR16A LTR ERVL 56 307 -143 617 115 28 39 chr3 212894144 212894326 -5142832 + GA-rich Low_complexity Low_complexity 1 180 0 1275 116 0 32 chr3 212895653 212895843 -5141315 + AluJo SINE Alu 1 184 -128 281 294 113 40 chr3 212895891 212896316 -5140842 - HAL1 LINE L1 -947 1560 1105 180 0 0 0 chr3 212896373 212896393 -5140765 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 198 0 0 0 chr3 212897249 212897271 -5139887 + (TG)n Simple_repeat Simple_repeat 2 23 0 200 273 121 0 chr3 212897810 212897876 -5139282 + L2 LINE L2 3197 3270 -2 367 312 39 78 chr3 212897997 212898228 -5138930 + L3 LINE CR1 1349 1570 -7 256 282 64 13 chr3 212900605 212900683 -5136475 - L3b LINE CR1 -315 1268 1187 248 290 48 57 chr3 212901894 212902018 -5135140 - L2 LINE L2 -1 3271 3149 761 180 8 0 chr3 212902033 212902155 -5135003 + FLAM_C SINE Alu 2 124 -19 21 0 0 0 chr3 212902155 212902176 -5134982 + AT_rich Low_complexity Low_complexity 1 21 0 1381 167 0 90 chr3 212902177 212902510 -5134648 - AluJo SINE Alu 0 317 12 1007 130 13 0 chr3 212902546 212902700 -5134458 + AluSx SINE Alu 1 156 -156 477 257 29 19 chr3 212902846 212903052 -5134106 + AluSq SINE Alu 92 299 -14 736 178 112 13 chr3 212903133 212903285 -5133873 - MER5B DNA MER1_type -2 176 10 421 98 0 0 chr3 212903501 212903562 -5133596 + (TG)n Simple_repeat Simple_repeat 1 61 0 2219 148 3 6 chr3 212904224 212904569 -5132589 + MER7A DNA MER2_type 3 344 -2 25 0 0 0 chr3 212905253 212905278 -5131880 + AT_rich Low_complexity Low_complexity 1 25 0 2580 47 0 3 chr3 212905531 212905828 -5131330 - AluY SINE Alu -15 296 1 357 283 92 33 chr3 212905843 212905963 -5131195 - L2 LINE L2 -8 3264 3138 434 287 80 32 chr3 212907038 212907226 -5129932 + MIR3 SINE MIR 11 207 -1 183 42 0 0 chr3 212907270 212907294 -5129864 + (CA)n Simple_repeat Simple_repeat 2 25 0 478 270 35 46 chr3 212908305 212908479 -5128679 + MIR SINE MIR 2 173 -89 343 275 54 25 chr3 212908965 212909085 -5128073 + MIR3 SINE MIR 30 156 -52 1842 157 6 0 chr3 212909155 212909493 -5127665 + L1 LINE L1 3308 3647 -2499 511 287 29 43 chr3 212910201 212910410 -5126748 - MLT1L LTR MaLR -409 206 1 815 163 54 76 chr3 212910433 212910617 -5126541 + MER5A DNA MER1_type 6 185 -4 262 278 263 29 chr3 212910754 212910959 -5126199 - MIR SINE MIR -6 256 4 199 274 88 62 chr3 212911445 212911558 -5125600 + L2 LINE L2 3138 3253 -19 200 245 0 20 chr3 212912512 212912561 -5124597 - MIR SINE MIR -136 72 25 2072 138 0 0 chr3 212913572 212913884 -5123274 + AluSx SINE Alu 1 312 0 266 276 95 17 chr3 212914414 212914530 -5122628 - MLT1J LTR MaLR -386 125 1 350 258 82 88 chr3 212914532 212914998 -5122160 + HAL1b LINE L1 235 697 -651 1168 168 61 53 chr3 212915028 212915290 -5121868 - AluJo SINE Alu -21 291 28 22 0 0 0 chr3 212915561 212915583 -5121575 + AT_rich Low_complexity Low_complexity 1 22 0 371 189 14 0 chr3 212915586 212915660 -5121498 + L1ME2 LINE L1 6080 6154 -10 337 289 128 37 chr3 212915710 212915733 -5121425 + L1MC4 LINE L1 7838 7858 -184 1938 160 39 104 chr3 212915733 212916195 -5120963 - MSTB1 LTR MaLR 0 432 1 337 289 128 37 chr3 212916195 212916358 -5120800 + L1MC4 LINE L1 7858 8041 -1 336 285 102 63 chr3 212916765 212917098 -5120060 + L1M4 LINE L1 2204 2549 -3597 237 352 91 10 chr3 212917164 212917363 -5119795 - L3 LINE CR1 -506 1071 857 1198 65 13 0 chr3 212917776 212917930 -5119228 + L1PA5 LINE L1 5995 6150 -4 283 336 42 0 chr3 212918133 212918252 -5118906 - L3 LINE CR1 -185 1392 1269 236 274 0 27 chr3 212918517 212918590 -5118568 - MIR3 SINE MIR -46 162 92 216 277 31 0 chr3 212918622 212918687 -5118471 - MIR SINE MIR -65 143 77 386 275 49 28 chr3 212918932 212919074 -5118084 - MER5A DNA MER1_type 0 189 45 * 452 281 22 22 chr3 212918972 212919107 -5118051 + MER5A DNA MER1_type 55 189 0 209 200 0 0 chr3 212919590 212919625 -5117533 + A-rich Low_complexity Low_complexity 1 35 0 392 245 232 0 chr3 212919876 212920027 -5117131 + MER5A DNA MER1_type 4 189 0 480 266 38 38 chr3 212920423 212920607 -5116551 - MIR3 SINE MIR -3 205 22 31 26 0 0 chr3 212921460 212921498 -5115660 + GC_rich Low_complexity Low_complexity 1 38 0 24 32 0 0 chr3 212921543 212921574 -5115584 + GC_rich Low_complexity Low_complexity 1 31 0 294 132 0 0 chr3 212921887 212921940 -5115218 + (TGAA)n Simple_repeat Simple_repeat 2 54 0 1667 78 136 12 chr3 212922062 212922319 -5114839 - AluSx SINE Alu -23 289 1 485 299 52 2 chr3 212923029 212923209 -5113949 - MIR SINE MIR -50 212 20 184 289 22 56 chr3 212923531 212923621 -5113537 - L2 LINE L2 -4 3268 3182 253 213 0 0 chr3 212923830 212923877 -5113281 - MSTD LTR MaLR 0 396 350 203 86 0 29 chr3 212923878 212923913 -5113245 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 543 211 10 0 chr3 212923937 212924041 -5113117 - FAM SINE Alu -13 172 68 2098 101 7 17 chr3 212924083 212924380 -5112778 - AluSx SINE Alu -18 294 1 1687 169 87 24 chr3 212924385 212924717 -5112441 - MSTD LTR MaLR -43 353 1 1301 223 65 12 chr3 212924794 212925295 -5111863 + L1ME LINE L1 5091 5616 -548 489 216 0 0 chr3 212925335 212925432 -5111726 + AluJb SINE Alu 208 304 -8 280 200 0 100 chr3 212925438 212925508 -5111650 + MER63 DNA MER1_type 31 719 -117 1888 152 3 0 chr3 212925813 212926116 -5111042 - AluSx SINE Alu -8 304 1 365 279 108 12 chr3 212926181 212926327 -5110831 + MER5A DNA MER1_type 21 187 -2 256 217 43 43 chr3 212927138 212927207 -5109951 - MIR SINE MIR -113 149 81 464 217 47 0 chr3 212927405 212927511 -5109647 - MER81 DNA DNA 0 114 4 801 219 149 10 chr3 212927898 212928099 -5109059 + MIR SINE MIR 34 262 0 929 249 57 22 chr3 212928936 212929253 -5107905 + LTR16C LTR ERVL 164 491 0 263 287 114 0 chr3 212929264 212929381 -5107777 - MIR SINE MIR -63 145 44 1413 103 5 0 chr3 212929506 212929700 -5107458 - AluSp SINE Alu -118 195 1 2456 208 21 47 chr3 212930349 212930883 -5106275 - MLT1H1 LTR MaLR 0 555 36 2026 114 3 10 chr3 212930926 212931233 -5105925 + AluSq SINE Alu 1 305 -8 258 311 80 61 chr3 212932546 212932810 -5104348 + L2 LINE L2 2593 2861 -453 237 304 33 11 chr3 212933340 212933432 -5103726 - MIR3 SINE MIR -15 193 100 218 318 0 0 chr3 212933858 212933921 -5103237 + L2 LINE L2 3251 3313 0 617 263 5 63 chr3 212933925 212934115 -5103043 + MIR3 SINE MIR 27 205 -3 190 353 20 10 chr3 212934211 212934313 -5102845 - MIR SINE MIR -37 225 123 1239 295 55 55 chr3 212934361 212935144 -5102014 + L1MEc LINE L1 123 905 -5491 240 250 132 0 chr3 212935156 212935232 -5101926 - MIR SINE MIR -102 106 21 266 297 0 0 chr3 212936596 212936660 -5100498 - Charlie4 DNA MER1_type -4 1957 1894 525 235 35 47 chr3 212936697 212936867 -5100291 - L2 LINE L2 0 3313 3146 370 228 15 7 chr3 212936869 212936967 -5100191 + AluJ/FLAM SINE Alu 1 76 -226 6816 162 8 6 chr3 212937070 212938289 -5098869 + L1MA3 LINE L1 3968 5189 -957 5853 104 16 19 chr3 212938289 212938963 -5098195 + L1MA3 LINE L1 5409 6084 -221 387 0 0 0 chr3 212938963 212939006 -5098152 + (TA)n Simple_repeat Simple_repeat 2 44 0 1912 87 61 4 chr3 212939010 212939287 -5097871 - AluSp SINE Alu -20 293 1 5853 104 16 19 chr3 212939287 212939488 -5097670 + L1MA3 LINE L1 6087 6305 0 197 279 99 88 chr3 212939498 212939770 -5097388 + L2 LINE L2 2699 2973 -341 1399 231 41 18 chr3 212939832 212940170 -5096988 + MLT1A2 LTR MaLR 1 346 -28 197 250 59 15 chr3 212940172 212940240 -5096918 - L2 LINE L2 -3 3269 3199 441 141 56 0 chr3 212940248 212940319 -5096839 - MIR SINE MIR -115 147 73 3703 211 42 29 chr3 212941513 212942727 -5094431 + L1ME2 LINE L1 4939 6154 -10 31 0 0 0 chr3 212943233 212943264 -5093894 + AT_rich Low_complexity Low_complexity 1 31 0 14354 67 7 5 chr3 212943430 212945202 -5091956 + HERVL LTR ERVL 3395 5171 -483 1624 221 123 11 chr3 212945422 212945884 -5091274 + L1ME2 LINE L1 5636 6149 -15 207 289 124 21 chr3 212946467 212946564 -5090594 + MIR SINE MIR 100 206 -56 1379 163 72 29 chr3 212947330 212947606 -5089552 - AluJo SINE Alu -21 291 4 501 160 0 0 chr3 212947893 212947999 -5089159 + (TGGA)n Simple_repeat Simple_repeat 3 108 0 424 258 117 8 chr3 212948389 212948517 -5088641 - MIR3 SINE MIR -43 165 24 2358 90 0 0 chr3 212949209 212949520 -5087638 + AluSq SINE Alu 3 313 0 223 244 0 0 chr3 212949834 212949879 -5087279 + GA-rich Low_complexity Low_complexity 2 46 0 247 320 48 41 chr3 212950375 212950522 -5086636 + MIR3 SINE MIR 45 192 -16 205 169 34 85 chr3 212950879 212950938 -5086220 + L2 LINE L2 3207 3262 -10 507 200 22 74 chr3 212951810 212951945 -5085213 + MER3 DNA MER1_type 82 209 0 308 250 43 86 chr3 212952264 212952380 -5084778 + L2 LINE L2 3150 3260 -12 1517 208 82 6 chr3 212952438 212952780 -5084378 + MLT1A2 LTR MaLR 3 370 -4 481 370 24 17 chr3 212954283 212954580 -5082578 - LTR16C LTR ERVL -14 477 179 2266 178 35 56 chr3 212954878 212955394 -5081764 - MLT1D LTR MaLR 0 505 1 378 348 7 0 chr3 212955594 212955735 -5081423 + MIR SINE MIR 9 150 -112 235 283 182 0 chr3 212955775 212955874 -5081284 - L2 LINE L2 -7 3306 3190 22 0 0 0 chr3 212956210 212956232 -5080926 + AT_rich Low_complexity Low_complexity 1 22 0 1828 214 73 37 chr3 212958875 212959496 -5077662 + L1M2b LINE L1 1 767 -6442 2152 125 0 0 chr3 213159837 213160208 -4876950 - AluSx SINE Alu 0 371 1 1799 143 33 3 chr3 213160733 213161033 -4876125 - AluJo SINE Alu -3 309 1 186 325 156 0 chr3 213161063 213161140 -4876018 + MIR SINE MIR 167 255 -7 2126 118 0 0 chr3 213161177 213161490 -4875668 - AluSq SINE Alu 0 313 1 1199 259 101 23 chr3 213161836 213162319 -4874839 - LTR33 LTR ERVL 0 521 1 2228 83 3 0 chr3 213162415 213162715 -4874443 + AluSg SINE Alu 4 304 -6 896 105 128 0 chr3 213162890 213163023 -4874135 - AluSg SINE Alu -160 150 1 976 98 0 0 chr3 213163104 213163236 -4873922 - AluSg/x SINE Alu -14 296 165 484 144 0 126 chr3 213164387 213164428 -4872730 - L1MB2 LINE L1 -4 6167 6122 2206 83 7 10 chr3 213164428 213164729 -4872429 - AluSq SINE Alu -13 300 1 484 144 0 126 chr3 213164729 213164798 -4872360 - L1MB2 LINE L1 -49 6122 6071 1443 264 71 42 chr3 213164798 213165276 -4871882 + MLT1K LTR MaLR 79 570 -18 1674 169 3 7 chr3 213166004 213166305 -4870853 + AluJo SINE Alu 1 300 -12 297 0 0 0 chr3 213166345 213166378 -4870780 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 278 233 55 0 chr3 213167026 213167099 -4870059 + L2 LINE L2 3202 3278 -35 359 266 129 14 chr3 213167256 213167395 -4869763 - MIR SINE MIR -98 164 10 400 248 7 50 chr3 213167894 213168035 -4869123 - HAL1 LINE L1 -2370 137 3 2332 54 7 3 chr3 213168810 213169108 -4868050 - AluY SINE Alu -11 300 2 403 279 43 0 chr3 213170124 213170257 -4866901 - MIR SINE MIR -7 201 51 653 152 9 0 chr3 213170638 213170743 -4866415 - U6 snRNA snRNA -1 106 1 330 374 99 22 chr3 213171080 213171262 -4865896 + L2 LINE L2 3077 3272 0 259 227 169 39 chr3 213171802 213172009 -4865149 - L1ME4a LINE L1 -143 5978 5745 1900 121 18 3 chr3 213172047 213172329 -4864829 + AluSq SINE Alu 3 288 -25 1347 207 3 19 chr3 213172337 213172646 -4864512 + AluJo SINE Alu 4 307 -5 220 244 0 0 chr3 213172704 213172749 -4864409 + T-rich Low_complexity Low_complexity 1 45 0 305 330 93 9 chr3 213172922 213173107 -4864051 - HAL1 LINE L1 0 2507 2300 1928 99 49 0 chr3 213173107 213173391 -4863767 - AluSx SINE Alu -14 298 1 305 330 93 9 chr3 213173391 213173420 -4863738 - HAL1 LINE L1 -207 2300 2275 257 229 8 34 chr3 213174039 213174157 -4863001 + CT-rich Low_complexity Low_complexity 2 116 0 889 283 42 32 chr3 213174770 213175180 -4861978 - L1ME4a LINE L1 -185 5936 5523 1933 144 7 0 chr3 213175410 213175715 -4861443 - AluSq SINE Alu -6 307 1 1056 99 0 0 chr3 213175716 213175858 -4861300 - AluSq/x SINE Alu -171 142 1 319 227 284 52 chr3 213176022 213176216 -4860942 - L1MC4 LINE L1 -12 8030 7792 2225 105 3 0 chr3 213176341 213176647 -4860511 + AluSp SINE Alu 1 307 -6 1317 282 116 46 chr3 213176676 213177216 -4859942 + L3 LINE CR1 780 1372 -205 2136 121 0 6 chr3 213177216 213177531 -4859627 + AluSq SINE Alu 1 313 0 1317 282 116 46 chr3 213177531 213177618 -4859540 + L3 LINE CR1 1372 1451 -126 2237 89 0 0 chr3 213177909 213178202 -4858956 - AluSx SINE Alu -19 293 1 697 213 8 0 chr3 213178892 213179014 -4858144 - MER5A DNA MER1_type -1 188 66 2122 113 13 6 chr3 213179014 213179325 -4857833 - AluSq SINE Alu 0 313 1 617 336 23 12 chr3 213179425 213179684 -4857474 + L2 LINE L2 2482 2743 -571 2223 97 0 3 chr3 213179907 213180217 -4856941 - AluSg SINE Alu 0 310 2 25 0 0 0 chr3 213180217 213180242 -4856916 + AT_rich Low_complexity Low_complexity 1 25 0 266 241 216 9 chr3 213180348 213180464 -4856694 + Charlie1a DNA MER1_type 1 140 -1315 2038 116 23 0 chr3 213180900 213181201 -4855957 - AluSx SINE Alu -2 310 3 2261 85 3 0 chr3 213181503 213181808 -4855350 + AluSq SINE Alu 2 307 -6 461 246 16 16 chr3 213181832 213181954 -4855204 + FLAM_C SINE Alu 6 127 -16 2103 85 3 0 chr3 213182022 213182304 -4854854 - AluSg SINE Alu -27 283 1 637 187 58 27 chr3 213182340 213182540 -4854618 - AluJb SINE Alu -48 264 2 3505 182 92 8 chr3 213184438 213185169 -4851989 - L1MB3 LINE L1 -62 6303 5512 1535 153 4 8 chr3 213185168 213185416 -4851742 - L1MC/D LINE L1 -650 5694 5448 * 2158 105 3 10 chr3 213185423 213185728 -4851430 - AluSp SINE Alu -10 303 1 735 111 0 0 chr3 213185744 213185852 -4851306 - AluSg/x SINE Alu 0 309 202 7268 143 2 30 chr3 213185852 213186912 -4850246 - MER11C LTR ERVK -8 1063 34 1635 94 0 0 chr3 213186918 213187142 -4850016 - AluY SINE Alu -87 224 1 2237 72 10 0 chr3 213187309 213187602 -4849556 - AluSx SINE Alu -16 296 1 2582 20 3 0 chr3 213188036 213188333 -4848825 - AluY SINE Alu -13 298 1 2158 73 13 3 chr3 213189700 213190000 -4847158 - AluSq SINE Alu -10 303 1 313 164 75 15 chr3 213190460 213190527 -4846631 - AluJo SINE Alu -114 188 118 308 242 8 57 chr3 213190559 213190683 -4846475 - L1MB3 LINE L1 -1446 4882 4765 2254 83 3 0 chr3 213190688 213190990 -4846168 + AluY SINE Alu 1 303 -8 2070 104 33 7 chr3 213192168 213192467 -4844691 - AluSq SINE Alu -5 308 2 355 298 39 39 chr3 213192813 213192994 -4844164 - HAL1 LINE L1 -353 2154 1974 1894 153 113 8 chr3 213194763 213195136 -4842022 - L1MC1 LINE L1 -249 6084 5673 377 151 20 110 chr3 213195123 213195269 -4841889 - L1MB4 LINE L1 0 6180 6048 * 1176 194 170 8 chr3 213196252 213196505 -4840653 + AluSx SINE Alu 1 294 -8 628 233 75 41 chr3 213196506 213196804 -4840354 - MSTD LTR MaLR -67 329 1 1797 266 62 34 chr3 213196804 213197518 -4839640 - L1MB3 LINE L1 -1682 4646 3913 2097 136 0 0 chr3 213197524 213197834 -4839324 + AluSx SINE Alu 1 310 -2 2693 242 87 25 chr3 213197842 213198395 -4838763 - L1MB3 LINE L1 -2795 3533 3015 2153 110 3 0 chr3 213198395 213198696 -4838462 - AluSg SINE Alu -8 302 1 2027 106 7 0 chr3 213198701 213198985 -4838173 - AluSx SINE Alu -26 286 1 2693 242 87 25 chr3 213198985 213199486 -4837672 - L1MB3 LINE L1 -3316 3012 2408 1364 200 42 45 chr3 213199503 213199912 -4837246 - L1MB8 LINE L1 -12 6166 5813 1056 280 60 40 chr3 213199923 213199967 -4837191 - L1MEc LINE L1 -4535 1861 1819 1920 161 15 18 chr3 213199967 213200303 -4836855 + MER1B DNA MER1_type 1 335 -2 1056 280 60 40 chr3 213200303 213200671 -4836487 - L1MEc LINE L1 -4577 1819 1433 1675 153 6 40 chr3 213200671 213200992 -4836166 - AluJb SINE Alu -2 310 1 1056 280 60 40 chr3 213200992 213201131 -4836027 - L1MEc LINE L1 -4963 1433 1298 1817 154 34 48 chr3 213201153 213201511 -4835647 - L1MB3 LINE L1 -4554 774 422 2176 119 0 0 chr3 213201636 213201939 -4835219 - AluSx SINE Alu -9 303 1 2061 85 0 26 chr3 213202254 213202560 -4834598 + AluSx SINE Alu 1 298 -14 187 100 0 40 chr3 213202597 213202647 -4834511 + (TG)n Simple_repeat Simple_repeat 2 49 0 1032 110 0 0 chr3 213202914 213203069 -4834089 - AluSx SINE Alu -1 309 155 664 106 0 0 chr3 213203072 213203166 -4833992 - AluSx SINE Alu -219 94 1 296 134 104 0 chr3 213203275 213203342 -4833816 - AluS SINE Alu -223 77 4 3102 103 13 4 chr3 213203343 213203799 -4833359 - L1MA3 LINE L1 -240 6065 5606 1031 160 0 5 chr3 213203799 213203987 -4833171 - AluJb SINE Alu -5 307 121 294 95 0 0 chr3 213203987 213204029 -4833129 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 1974 108 4 0 chr3 213204039 213204317 -4832841 - AluSq SINE Alu -32 281 3 2107 100 6 13 chr3 213204320 213204631 -4832527 - AluSc SINE Alu 0 309 1 655 257 43 20 chr3 213204851 213205104 -4832054 + LTR37B LTR ERV1 10 268 -200 1357 104 9 47 chr3 213205233 213205444 -4831714 + THE1B LTR MaLR 162 364 0 670 287 153 0 chr3 213205468 213205743 -4831415 + L1ME3A LINE L1 5334 5650 -512 454 243 149 7 chr3 213205747 213205895 -4831263 + MER112 DNA MER1_type 2 170 -90 207 259 19 0 chr3 213205933 213205987 -4831171 - MER5B DNA MER1_type 0 178 124 939 28 0 0 chr3 213205995 213206102 -4831056 + U6 snRNA snRNA 1 107 0 6829 8 1 0 chr3 213206102 213206855 -4830303 + L1PA2 LINE L1 5402 6155 0 280 233 69 78 chr3 213206882 213206998 -4830160 - MER5B DNA MER1_type -49 129 15 642 241 97 117 chr3 213207062 213207473 -4829685 + L1ME3A LINE L1 5690 6092 -70 1049 130 12 0 chr3 213207484 213207645 -4829513 - AluSg/x SINE Alu -13 299 137 420 174 0 14 chr3 213207681 213207750 -4829408 + MER20 DNA MER1_type 152 219 0 573 278 23 6 chr3 213207757 213207930 -4829228 + MER46C DNA MER2_type 161 336 -2 1773 139 0 20 chr3 213208960 213209263 -4827895 - AluSx SINE Alu -15 297 1 827 162 0 0 chr3 213209263 213209399 -4827759 - AluJb SINE Alu -176 136 1 2168 81 3 0 chr3 213209997 213210280 -4826878 + AluY SINE Alu 1 308 0 217 0 0 0 chr3 213210280 213210304 -4826854 + (TAAAA)n Simple_repeat Simple_repeat 2 110 0 2202 123 48 23 chr3 213210464 213210815 -4826343 + THE1B LTR MaLR 1 360 -4 1931 147 40 0 chr3 213211124 213211424 -4825734 + AluSx SINE Alu 1 312 0 203 344 0 0 chr3 213211557 213211621 -4825537 + MIR SINE MIR 15 78 -184 838 216 106 9 chr3 213211638 213211856 -4825302 + L1MD3 LINE L1 6780 7018 -977 426 275 94 38 chr3 213212931 213213094 -4824064 + L1MEd LINE L1 891 1043 -5267 2273 103 10 0 chr3 213213094 213213395 -4823763 + AluSp SINE Alu 1 304 -9 426 275 94 38 chr3 213213395 213213828 -4823330 + L1MEd LINE L1 1043 1575 -4735 2157 122 0 0 chr3 213214029 213214316 -4822842 + AluSx SINE Alu 1 287 -25 21 36 0 0 chr3 213214329 213214357 -4822801 + AT_rich Low_complexity Low_complexity 1 28 0 865 172 0 53 chr3 213214404 213214573 -4822585 - FAM SINE Alu -16 169 10 1503 160 22 128 chr3 213214583 213214695 -4822463 + L1MB4 LINE L1 5817 5939 -241 1641 201 0 3 chr3 213214695 213214978 -4822180 - AluJo SINE Alu -30 282 1 1503 160 22 128 chr3 213214978 213215107 -4822051 + L1MB4 LINE L1 5939 6000 -180 2406 86 0 19 chr3 213215107 213215422 -4821736 - AluY SINE Alu -2 309 1 1503 160 22 128 chr3 213215422 213215586 -4821572 + L1MB4 LINE L1 6000 6180 0 1708 161 41 0 chr3 213215615 213215907 -4821251 - AluJb SINE Alu -8 304 1 885 164 124 6 chr3 213215942 213215987 -4821171 + AluJb SINE Alu 85 123 -202 1924 146 10 7 chr3 213215987 213216296 -4820862 + AluSx SINE Alu 1 310 -2 885 164 124 6 chr3 213216296 213216470 -4820688 + AluJb SINE Alu 123 325 0 331 254 93 16 chr3 213216470 213216718 -4820440 + L1MEd LINE L1 3016 3282 -2847 1382 232 155 43 chr3 213216727 213217159 -4819999 + MER20B DNA MER1_type 97 609 -174 2328 59 0 21 chr3 213217159 213217474 -4819684 + AluY SINE Alu 1 309 0 1382 232 155 43 chr3 213217474 213217601 -4819557 + MER20B DNA MER1_type 609 720 -63 1020 265 42 12 chr3 213217629 213217961 -4819197 + L1MD3 LINE L1 5595 5936 -1872 396 0 0 0 chr3 213217977 213218021 -4819137 + (CA)n Simple_repeat Simple_repeat 2 45 0 638 141 141 0 chr3 213218068 213218196 -4818962 - L1MA9 LINE L1 0 6312 6167 27 0 0 0 chr3 213218729 213218756 -4818402 + AT_rich Low_complexity Low_complexity 1 27 0 2225 112 10 0 chr3 213218758 213219052 -4818106 + AluSg SINE Alu 1 297 -13 646 290 32 9 chr3 213219287 213219504 -4817654 + L1MB7 LINE L1 5364 5585 -577 1988 143 3 16 chr3 213219504 213219812 -4817346 + AluSx SINE Alu 1 304 -8 2112 109 51 3 chr3 213219812 213220106 -4817052 + AluSx SINE Alu 1 308 -4 1245 67 61 0 chr3 213220109 213220274 -4816884 + AluSg/x SINE Alu 130 304 -6 382 311 36 52 chr3 213220439 213220632 -4816526 + MIR3 SINE MIR 14 203 -5 442 57 143 0 chr3 213221090 213221160 -4815998 + MADE1 DNA Mariner 1 80 0 695 227 203 4 chr3 213221516 213221719 -4815439 + L1MD3 LINE L1 6810 7076 -919 192 77 0 0 chr3 213221719 213221745 -4815413 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 695 227 203 4 chr3 213221745 213221797 -4815361 + L1MD3 LINE L1 7076 7116 -879 375 258 0 21 chr3 213221798 213221891 -4815267 + MLT1F1 LTR MaLR 36 126 -441 2869 177 45 12 chr3 213221891 213222462 -4814696 + L1MD3 LINE L1 7405 7994 -1 2746 156 47 36 chr3 213222473 213223049 -4814109 + L1MB7 LINE L1 5585 6166 -18 4619 200 149 11 chr3 213223297 213223428 -4813730 - Charlie1a DNA MER1_type -1307 1454 1342 2268 117 0 0 chr3 213223428 213223736 -4813422 + AluSx SINE Alu 1 308 -4 4619 200 149 11 chr3 213223736 213224882 -4812276 - Charlie1a DNA MER1_type -1419 1342 1 1465 99 5 0 chr3 213225026 213225218 -4811940 - AluSx SINE Alu -119 193 1 747 172 149 69 chr3 213225908 213226031 -4811127 - MER5A DNA MER1_type -1 188 46 2293 114 0 9 chr3 213226031 213226346 -4810812 - AluSx SINE Alu 0 312 1 747 172 149 69 chr3 213226346 213226396 -4810762 - MER5A DNA MER1_type -143 46 1 2359 41 0 0 chr3 213226554 213226821 -4810337 - AluY SINE Alu -13 298 32 2495 67 6 19 chr3 213226907 213227222 -4809936 - AluSp SINE Alu -2 311 1 450 316 43 14 chr3 213227861 213228070 -4809088 + L1MC4a LINE L1 5716 5930 -1878 2417 91 0 0 chr3 213228095 213228404 -4808754 + AluSp SINE Alu 1 309 -4 25 0 0 0 chr3 213228499 213228524 -4808634 + AT_rich Low_complexity Low_complexity 1 25 0 848 232 29 10 chr3 213228579 213228786 -4808372 - MIR SINE MIR -27 235 25 249 310 100 6 chr3 213229347 213229509 -4807649 - MIR SINE MIR -43 219 35 2430 70 3 7 chr3 213230140 213230440 -4806718 - AluSx SINE Alu -13 299 1 1198 90 154 15 chr3 213230681 213230882 -4806276 + MER30 DNA MER1_type 2 230 0 190 267 67 33 chr3 213231180 213231270 -4805888 - MIR SINE MIR -118 144 52 2282 89 10 0 chr3 213231379 213231672 -4805486 + AluSx SINE Alu 1 296 -16 1795 53 9 9 chr3 213231839 213232064 -4805094 + AluSq SINE Alu 1 225 -88 8602 50 1 13 chr3 213232070 213233113 -4804045 + MER11C LTR ERVK 34 1063 -8 733 111 0 0 chr3 213233113 213233221 -4803937 + AluSg/x SINE Alu 205 312 0 2263 99 3 10 chr3 213233237 213233531 -4803627 + AluSp SINE Alu 1 292 -21 2386 86 20 0 chr3 213234196 213234497 -4802661 + AluSp SINE Alu 1 307 -6 609 222 127 32 chr3 213234712 213234933 -4802225 - L1ME3 LINE L1 -22 6140 5899 1111 61 0 0 chr3 213234934 213235065 -4802093 + AluSg1 SINE Alu 1 131 -178 923 253 62 0 chr3 213235075 213235348 -4801810 - L1ME3 LINE L1 -252 5910 5621 908 294 50 11 chr3 213235345 213235709 -4801449 - L1ME3 LINE L1 -1749 4397 4020 * 2302 91 10 0 chr3 213235854 213236150 -4801008 - AluSq SINE Alu -13 300 2 1419 292 45 23 chr3 213236183 213236547 -4800611 - L1ME3 LINE L1 -2168 3978 3623 1578 126 0 0 chr3 213236547 213236762 -4800396 - AluSg/x SINE Alu -7 305 91 1419 292 45 23 chr3 213236762 213237093 -4800065 - L1ME3 LINE L1 -2523 3623 3268 2420 191 109 4 chr3 213237117 213237641 -4799517 - L1MD3 LINE L1 -13 7982 7404 266 145 16 97 chr3 213237641 213237703 -4799455 - MLT1F1 LTR MaLR -442 125 69 326 176 255 0 chr3 213237721 213237823 -4799335 - L1MC3 LINE L1 -663 7122 6995 377 157 29 0 chr3 213238337 213238407 -4798751 + L2 LINE L2 3201 3272 0 21 0 0 0 chr3 213239100 213239121 -4798037 + AT_rich Low_complexity Low_complexity 1 21 0 531 269 48 6 chr3 213239162 213239329 -4797829 - MIR3 SINE MIR -3 205 32 2526 60 0 0 chr3 213239483 213239781 -4797377 + AluY SINE Alu 1 298 -13 2113 90 11 0 chr3 213240214 213240492 -4796666 + AluSq SINE Alu 1 281 -32 294 95 0 0 chr3 213240502 213240544 -4796614 + (CATATA)n Simple_repeat Simple_repeat 3 44 0 1066 144 0 6 chr3 213240544 213240711 -4796447 + AluJb SINE Alu 121 286 -26 4728 98 10 26 chr3 213240720 213241190 -4795968 + L1MA3 LINE L1 5594 6070 -235 2253 117 3 0 chr3 213241190 213241497 -4795661 + AluSq SINE Alu 4 311 -2 1454 197 27 17 chr3 213241502 213241630 -4795528 + AluJb SINE Alu 1 126 -186 2172 123 0 3 chr3 213241630 213241938 -4795220 + AluSx SINE Alu 1 307 -5 1454 197 27 17 chr3 213241938 213242104 -4795054 + AluJb SINE Alu 126 298 -14 4728 98 10 26 chr3 213242104 213242351 -4794807 + L1MA3 LINE L1 6074 6305 0 2652 51 0 6 chr3 213242478 213242790 -4794368 - AluY SINE Alu -1 310 1 2330 113 0 0 chr3 213243633 213243943 -4793215 - AluSx SINE Alu -2 310 1 2259 92 0 16 chr3 213244798 213245102 -4792056 - AluSc SINE Alu -10 299 1 1045 90 90 0 chr3 213245103 213245258 -4791900 + MER4E LTR ERV1 572 740 -26 1644 157 21 3 chr3 213245376 213245662 -4791496 - L1MB8 LINE L1 -99 6079 5789 1861 136 40 3 chr3 213245662 213246023 -4791135 + AluJo SINE Alu 1 372 0 1360 165 61 122 chr3 213246023 213246416 -4790742 - L1MB8 LINE L1 -384 5800 5432 2047 96 13 17 chr3 213246416 213246717 -4790441 - AluSq SINE Alu -13 300 1 2475 63 3 0 chr3 213247150 213247449 -4789709 - AluY SINE Alu -11 300 1 541 264 48 6 chr3 213247603 213247770 -4789388 + MIR3 SINE MIR 32 205 -3 21 0 0 0 chr3 213247811 213247832 -4789326 + AT_rich Low_complexity Low_complexity 1 21 0 377 157 29 0 chr3 213248525 213248595 -4788563 - L2 LINE L2 0 3272 3201 326 176 255 0 chr3 213249109 213249211 -4787947 + L1MC3 LINE L1 6995 7122 -663 266 145 16 97 chr3 213249229 213249291 -4787867 + MLT1F1 LTR MaLR 69 125 -442 2400 189 108 8 chr3 213249291 213249821 -4787337 + L1MD3 LINE L1 7404 7986 -9 1435 284 54 23 chr3 213249833 213250172 -4786986 + L1ME3 LINE L1 3253 3580 -2566 1668 107 0 0 chr3 213250172 213250387 -4786771 + AluSg/x SINE Alu 91 305 -7 1435 284 54 23 chr3 213250387 213250751 -4786407 + L1ME3 LINE L1 3580 3978 -2168 2229 115 0 0 chr3 213250784 213251080 -4786078 + AluSg SINE Alu 2 297 -13 908 294 50 11 chr3 213251225 213251589 -4785569 + L1ME3 LINE L1 4020 4397 -1749 * 923 253 62 0 chr3 213251586 213251859 -4785299 + L1ME3 LINE L1 5621 5910 -252 1111 61 0 0 chr3 213251869 213252000 -4785158 - AluSg1 SINE Alu -178 131 1 609 222 127 32 chr3 213252001 213252222 -4784936 + L1ME3 LINE L1 5899 6140 -22 2324 93 3 3 chr3 213252436 213252737 -4784421 - AluSg SINE Alu -6 304 4 634 242 117 39 chr3 213252740 213253100 -4784058 - L1MB8 LINE L1 -1011 5135 4748 1991 155 7 0 chr3 213253106 213253403 -4783755 - AluJb SINE Alu -13 299 1 2230 82 4 0 chr3 213253747 213254050 -4783108 - AluY SINE Alu 0 304 1 309 329 42 14 chr3 213254199 213254342 -4782816 + L2 LINE L2 3166 3312 -1 222 62 0 0 chr3 213254534 213254566 -4782592 + (T)n Simple_repeat Simple_repeat 1 32 0 1831 101 0 16 chr3 213254737 213254994 -4782164 - AluSx SINE Alu -16 296 44 2271 125 0 0 chr3 213255257 213255679 -4781479 - AluSx SINE Alu 0 422 1 1913 143 33 3 chr3 213256204 213256504 -4780654 - AluJo SINE Alu -3 309 1 2245 118 0 0 chr3 213256648 213256961 -4780197 - AluSq SINE Alu 0 313 1 1182 257 101 23 chr3 213257307 213257790 -4779368 - LTR33 LTR ERVL 0 521 1 2160 101 7 0 chr3 213257886 213258184 -4778974 + AluSg SINE Alu 4 303 -7 640 152 50 0 chr3 213258198 213258297 -4778861 + FLAM_A SINE Alu 13 116 -26 1402 189 87 87 chr3 213258300 213258605 -4778553 + L1MB7 LINE L1 5785 6092 -92 2438 92 0 22 chr3 213258605 213258922 -4778236 + AluSg SINE Alu 1 310 0 1402 189 87 87 chr3 213258922 213258986 -4778172 + L1MB7 LINE L1 6091 6154 -30 469 332 26 22 chr3 213259094 213259320 -4777838 + MARNA DNA Mariner 347 573 -13 1617 175 3 14 chr3 213259472 213259791 -4777367 + AluSx SINE Alu 1 316 0 324 264 0 0 chr3 213259981 213260053 -4777105 + MER81 DNA DNA 43 114 0 413 292 93 58 chr3 213260060 213260351 -4776807 + L2 LINE L2 2972 3272 0 23 33 0 0 chr3 213260830 213260860 -4776298 + AT_rich Low_complexity Low_complexity 1 30 0 * 335 256 72 24 chr3 213260838 213260963 -4776195 - L1ME4a LINE L1 0 6121 5991 2772 113 99 64 chr3 213261035 213261570 -4775588 + LTR10A LTR ERV1 1 596 -37 2175 116 0 0 chr3 213261570 213261873 -4775285 - AluSg SINE Alu -7 303 1 2772 113 99 64 chr3 213261873 213261891 -4775267 + LTR10A LTR ERV1 596 612 -21 920 206 35 5 chr3 213262045 213262244 -4774914 - LTR37B LTR ERV1 -254 214 10 2060 88 3 14 chr3 213262464 213262749 -4774409 + AluSc SINE Alu 1 282 -27 216 0 0 0 chr3 213262752 213262776 -4774382 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2209 88 3 3 chr3 213262779 213263073 -4774085 + AluSp SINE Alu 3 296 -17 21 0 0 0 chr3 213263576 213263597 -4773561 + AT_rich Low_complexity Low_complexity 1 21 0 2303 87 0 3 chr3 213263612 213263921 -4773237 - AluSp SINE Alu -5 308 1 2036 127 7 0 chr3 213264725 213265033 -4772125 - AluSx SINE Alu -2 310 1 1295 104 6 0 chr3 213265060 213265242 -4771916 + AluSg SINE Alu 1 183 -127 2152 125 0 0 chr3 213265594 213266022 -4771136 - AluSx SINE Alu 0 428 1 1710 155 34 3 chr3 213266547 213266844 -4770314 - AluJo SINE Alu -6 306 1 186 325 156 0 chr3 213266874 213266951 -4770207 + MIR SINE MIR 167 255 -7 2126 118 0 0 chr3 213266988 213267301 -4769857 - AluSq SINE Alu 0 313 1 1221 257 101 23 chr3 213267646 213268129 -4769029 - LTR33 LTR ERVL 0 521 1 2072 77 4 0 chr3 213268225 213268499 -4768659 + AluSg SINE Alu 4 278 -32 225 0 0 0 chr3 213268499 213268524 -4768634 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 459 266 95 135 chr3 213268529 213268952 -4768206 - MLT1L LTR MaLR -67 548 109 2347 97 3 0 chr3 213268952 213269262 -4767896 - AluSp SINE Alu -2 311 1 1409 143 54 48 chr3 213269264 213269558 -4767600 - AluJo SINE Alu -14 298 3 459 266 95 135 chr3 213269558 213269702 -4767456 - MLT1L LTR MaLR -507 108 1 905 85 31 0 chr3 213269888 213270017 -4767141 + AluSg SINE Alu 1 133 -177 2269 89 3 0 chr3 213270017 213270320 -4766838 + AluSx SINE Alu 1 304 -8 409 196 58 112 chr3 213270815 213271039 -4766119 - L1MB8 LINE L1 0 6178 5967 233 262 81 0 chr3 213271043 213271192 -4765966 + (CCCCAG)n Simple_repeat Simple_repeat 2 162 0 262 190 24 0 chr3 213271312 213271396 -4765762 - L1ME1 LINE L1 -148 6030 5936 2272 104 0 0 chr3 213271413 213271722 -4765436 + AluSx SINE Alu 1 309 -3 839 249 65 19 chr3 213271840 213271987 -4765171 + L1MC/D LINE L1 5212 5351 -1025 2072 82 0 75 chr3 213271987 213272305 -4764853 + AluSc SINE Alu 1 294 -15 839 249 65 19 chr3 213272305 213272498 -4764660 + L1MC/D LINE L1 5351 5568 -808 533 261 106 21 chr3 213272524 213272712 -4764446 + L2 LINE L2 2830 3033 -280 330 374 99 22 chr3 213273206 213273388 -4763770 + L2 LINE L2 3077 3272 0 664 106 0 0 chr3 213273630 213273724 -4763434 - AluS SINE Alu -218 94 1 369 329 42 14 chr3 213273851 213273994 -4763164 - L2 LINE L2 -1 3312 3166 1207 60 0 0 chr3 213274143 213274292 -4762866 + AluY SINE Alu 1 149 -162 344 288 83 45 chr3 213274692 213274824 -4762334 + MIR SINE MIR 110 246 -16 2150 99 10 0 chr3 213274854 213275158 -4762000 + AluSq SINE Alu 1 307 -6 1325 283 116 46 chr3 213275187 213275727 -4761431 + L3 LINE CR1 780 1372 -205 2136 121 0 6 chr3 213275727 213276042 -4761116 + AluSq SINE Alu 1 313 0 1325 283 116 46 chr3 213276042 213276129 -4761029 + L3 LINE CR1 1372 1451 -126 1357 148 9 5 chr3 213276397 213276620 -4760538 + AluSc SINE Alu 84 307 -2 293 233 103 52 chr3 213278283 213278399 -4758759 + L2 LINE L2 3129 3250 -22 2271 99 0 0 chr3 213278502 213278815 -4758343 - AluSq SINE Alu 0 313 1 761 190 49 0 chr3 213280433 213280596 -4756562 + L1M4 LINE L1 5272 5442 -732 1833 91 4 4 chr3 213280596 213280839 -4756319 + AluSx SINE Alu 1 243 -69 2109 93 0 14 chr3 213281297 213281587 -4755571 + AluSc SINE Alu 1 286 -23 209 0 97 0 chr3 213281593 213281624 -4755534 + A-rich Low_complexity Low_complexity 4 37 0 2023 128 0 0 chr3 213281636 213281932 -4755226 + AluJb SINE Alu 1 296 -16 2398 67 7 0 chr3 213282895 213283195 -4753963 - AluSq SINE Alu -10 303 2 403 279 43 0 chr3 213284211 213284344 -4752814 - MIR SINE MIR -7 201 51 653 152 9 0 chr3 213284725 213284830 -4752328 - U6 snRNA snRNA -1 106 1 330 374 99 22 chr3 213285166 213285348 -4751810 + L2 LINE L2 3077 3272 0 259 227 169 39 chr3 213285889 213286096 -4751062 - L1ME4a LINE L1 -143 5978 5745 1900 121 18 3 chr3 213286134 213286416 -4750742 + AluSq SINE Alu 3 288 -25 1433 191 10 23 chr3 213286424 213286733 -4750425 + AluJo SINE Alu 4 308 -4 220 244 0 0 chr3 213286791 213286836 -4750322 + T-rich Low_complexity Low_complexity 1 45 0 305 330 93 9 chr3 213287009 213287194 -4749964 - HAL1 LINE L1 0 2507 2300 1928 99 49 0 chr3 213287194 213287478 -4749680 - AluSx SINE Alu -14 298 1 305 330 93 9 chr3 213287478 213287507 -4749651 - HAL1 LINE L1 -207 2300 2275 193 138 0 0 chr3 213289026 213289055 -4748103 + MIR SINE MIR 123 151 -57 2010 108 3 20 chr3 213289176 213289473 -4747685 - AluSx SINE Alu -20 292 1 183 111 0 28 chr3 213289671 213289707 -4747451 - L2 LINE L2 0 3313 3279 1974 125 3 0 chr3 213290147 213290443 -4746715 + AluSg SINE Alu 1 297 -13 2150 111 3 0 chr3 213290445 213290743 -4746415 + AluSp SINE Alu 3 301 -12 233 193 108 48 chr3 213290851 213290934 -4746224 + L1MC1 LINE L1 5379 5466 -655 637 187 58 27 chr3 213292708 213292908 -4744250 + AluJb SINE Alu 2 264 -48 1864 81 85 4 chr3 213292944 213293216 -4743942 + AluSg SINE Alu 1 294 -16 1710 143 32 11 chr3 213293309 213293620 -4743538 + AluSx SINE Alu 1 312 0 1948 179 16 30 chr3 213293937 213294020 -4743138 + L1MB3 LINE L1 5750 5833 -350 1405 123 88 128 chr3 213294020 213294158 -4743000 - MER46B DNA MER2_type -2495 236 94 2098 118 7 0 chr3 213294158 213294463 -4742695 + AluSq SINE Alu 1 307 -6 1405 123 88 128 chr3 213294463 213294547 -4742611 - MER46B DNA MER2_type -2637 94 157 1841 139 3 3 chr3 213294547 213294835 -4742323 - AluSx SINE Alu -24 288 1 1405 123 88 128 chr3 213294835 213294986 -4742172 - MER46B DNA MER2_type -2573 158 2 1948 179 16 30 chr3 213294986 213295342 -4741816 + L1MB3 LINE L1 5833 6183 0 21 36 0 0 chr3 213295430 213295458 -4741700 + AT_rich Low_complexity Low_complexity 1 28 0 1066 171 13 57 chr3 213295850 213295912 -4741246 + AluJo SINE Alu 84 147 -165 2198 95 0 10 chr3 213295912 213296218 -4740940 + AluSq SINE Alu 1 303 -10 1066 171 13 57 chr3 213296218 213296383 -4740775 + AluJo SINE Alu 147 301 -11 1544 152 4 8 chr3 213296388 213296638 -4740520 + L1MC1 LINE L1 5446 5694 -650 * 3830 179 85 9 chr3 213296637 213297429 -4739729 + L1MB3 LINE L1 5330 6181 -2 3103 152 83 26 chr3 213297416 213298040 -4739118 + L1MC1 LINE L1 5673 6332 -1 * 415 293 75 29 chr3 213298512 213298686 -4738472 + L1M4 LINE L1 2631 2812 -3334 332 367 6 13 chr3 213298703 213298861 -4738297 + L1M4 LINE L1 2876 3032 -3114 499 116 0 0 chr3 213298877 213298946 -4738212 + U4 snRNA snRNA 1 69 -76 651 285 150 30 chr3 213299022 213299355 -4737803 + L1M4 LINE L1 3112 3484 -2662 2211 92 7 0 chr3 213299372 213299677 -4737481 - AluSp SINE Alu -6 307 1 382 289 173 0 chr3 213299829 213299985 -4737173 + L1M4 LINE L1 3867 4049 -2097 876 87 48 0 chr3 213300084 213300210 -4736948 + AluY SINE Alu 1 132 -179 1973 139 3 3 chr3 213300369 213300679 -4736479 - AluSx SINE Alu -2 310 1 1883 120 7 27 chr3 213300787 213301088 -4736070 + AluSx SINE Alu 1 295 -17 770 149 9 0 chr3 213301660 213301774 -4735384 - FRAM SINE Alu -24 152 38 541 183 63 32 chr3 213301978 213302104 -4735054 - FLAM_A SINE Alu 0 133 4 1476 116 25 113 chr3 213302297 213302638 -4734520 - AluYb8 SINE Alu 0 313 1 493 270 145 15 chr3 213302698 213302898 -4734260 - MIR SINE MIR -2 260 35 2379 42 3 19 chr3 213303259 213303569 -4733589 - AluY SINE Alu -5 306 2 21 0 0 0 chr3 213303635 213303656 -4733502 + AT_rich Low_complexity Low_complexity 1 21 0 2075 67 56 0 chr3 213303824 213304109 -4733049 + AluSp SINE Alu 7 307 -6 23 78 0 0 chr3 213305924 213305975 -4731183 + GC_rich Low_complexity Low_complexity 1 51 0 204 40 0 0 chr3 213306137 213306162 -4730996 + (GGGGA)n Simple_repeat Simple_repeat 1 25 0 304 239 130 101 chr3 213306769 213306844 -4730314 - L2 LINE L2 -1 3312 3230 2045 96 27 7 chr3 213306844 213307145 -4730013 + AluSx SINE Alu 4 310 -2 304 239 130 101 chr3 213307145 213307207 -4729951 - L2 LINE L2 -83 3230 3171 387 343 117 24 chr3 213307385 213307633 -4729525 - L2 LINE L2 -420 2894 2624 2266 250 95 66 chr3 213307726 213308606 -4728552 + L1MEd LINE L1 17 1006 -5304 2210 93 3 3 chr3 213308606 213308916 -4728242 + AluSq SINE Alu 1 310 -3 2266 250 95 66 chr3 213308916 213309427 -4727731 + L1MEd LINE L1 1006 1501 -4809 2025 141 3 0 chr3 213309451 213309757 -4727401 + AluSq SINE Alu 1 307 -6 880 283 42 32 chr3 213309987 213310397 -4726761 + L1ME4a LINE L1 5523 5936 -185 388 330 163 0 chr3 213311759 213311968 -4725190 - MIR SINE MIR -15 247 5 247 283 20 30 chr3 213312019 213312118 -4725040 + L2 LINE L2 2939 3036 -236 202 194 0 0 chr3 213312294 213312330 -4724828 + (TCCA)n Simple_repeat Simple_repeat 3 38 0 842 205 36 0 chr3 213312330 213312496 -4724662 - FAM SINE Alu -6 43 1 1755 112 66 46 chr3 213312507 213312811 -4724347 - AluSg SINE Alu 0 310 1 976 98 0 0 chr3 213312892 213313024 -4724134 - AluSg/x SINE Alu -14 298 167 484 144 0 126 chr3 213314176 213314217 -4722941 - L1MB2 LINE L1 -4 6167 6122 2179 84 7 10 chr3 213314217 213314515 -4722643 - AluSq SINE Alu -16 297 1 484 144 0 126 chr3 213314515 213314584 -4722574 - L1MB2 LINE L1 -49 6122 6071 1430 266 71 42 chr3 213314584 213315062 -4722096 + MLT1K LTR MaLR 79 570 -18 1765 159 3 7 chr3 213315790 213316091 -4721067 + AluJo SINE Alu 1 300 -12 252 0 0 0 chr3 213316131 213316159 -4720999 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 278 233 55 0 chr3 213316808 213316881 -4720277 + L2 LINE L2 3202 3278 -35 359 266 129 14 chr3 213317038 213317177 -4719981 - MIR SINE MIR -98 164 10 33 43 0 0 chr3 213317643 213317690 -4719468 + GC_rich Low_complexity Low_complexity 1 47 0 215 219 0 0 chr3 213318188 213318229 -4718929 - MIR SINE MIR -33 229 189 1499 183 26 16 chr3 213318532 213318838 -4718320 + AluJo SINE Alu 1 309 -3 723 306 93 46 chr3 213318906 213319134 -4718024 + L2 LINE L2 2128 2344 -970 2067 95 21 0 chr3 213319134 213319419 -4717739 - AluSx SINE Alu -21 291 1 723 306 93 46 chr3 213319419 213319778 -4717380 + L2 LINE L2 2344 2743 -571 2003 122 30 3 chr3 213320001 213320305 -4716853 - AluJb SINE Alu 0 312 1 2353 70 0 3 chr3 213321183 213321481 -4715677 - AluSq SINE Alu -16 297 1 2079 131 0 3 chr3 213321585 213321897 -4715261 + AluSq SINE Alu 1 311 -2 293 233 103 52 chr3 213323591 213323707 -4713451 + L2 LINE L2 3129 3250 -22 2241 97 7 0 chr3 213323814 213324124 -4713034 - AluSq SINE Alu -1 312 1 1960 169 58 108 chr3 213325748 213325911 -4711247 + L1MB8 LINE L1 5272 5442 -742 1945 128 0 16 chr3 213325911 213326216 -4710942 + AluSq SINE Alu 1 300 -13 1960 169 58 108 chr3 213326216 213326609 -4710549 + L1MB8 LINE L1 5442 5800 -384 1764 139 33 3 chr3 213326609 213326976 -4710182 - AluJo SINE Alu 0 376 1 2020 174 16 3 chr3 213326976 213327355 -4709803 + L1MB8 LINE L1 5789 6172 -6 1818 91 4 4 chr3 213327371 213327612 -4709546 + AluSx SINE Alu 3 243 -69 2158 105 0 13 chr3 213328066 213328379 -4708779 + AluSc SINE Alu 1 309 0 1858 138 0 26 chr3 213328405 213328710 -4708448 + AluJb SINE Alu 1 297 -15 279 197 57 8 chr3 213328770 213328892 -4708266 + (TATAA)n Simple_repeat Simple_repeat 3 130 0 487 224 52 9 chr3 213329378 213329494 -4707664 + LTR67 LTR ERVL 434 554 -3 2200 92 10 0 chr3 213329495 213329800 -4707358 + AluSc SINE Alu 1 308 -1 2353 78 3 0 chr3 213330582 213330890 -4706268 - AluSg SINE Alu -1 309 1 519 159 189 15 chr3 213331050 213331182 -4705976 + MIR SINE MIR 108 262 0 418 239 34 17 chr3 213332044 213332161 -4704997 + MIR SINE MIR 21 139 -123 1986 132 16 0 chr3 213333300 213333604 -4703554 - AluSx SINE Alu -3 309 1 2267 79 0 0 chr3 213334005 213334297 -4702861 - AluSg SINE Alu -18 292 1 436 237 65 36 chr3 213334301 213334440 -4702718 - Charlie4 DNA MER1_type -1 1960 1818 25 65 0 0 chr3 213334599 213334645 -4702513 + AT_rich Low_complexity Low_complexity 1 46 0 1170 176 60 101 chr3 213335224 213335419 -4701739 - L1MDa LINE L1 -4080 2641 2439 998 41 0 0 chr3 213335419 213335540 -4701618 - L1PA4 LINE L1 -3 6152 6032 1170 176 60 101 chr3 213335540 213335827 -4701331 - L1MDa LINE L1 -4282 2439 2179 3216 179 56 17 chr3 213335834 213335884 -4701274 - L1MB3 LINE L1 0 6183 6136 1848 111 39 0 chr3 213335884 213336164 -4700994 - AluSc SINE Alu -18 291 1 3216 179 56 17 chr3 213336164 213336761 -4700397 - L1MB3 LINE L1 -47 6136 5511 976 244 145 17 chr3 213336762 213337500 -4699658 - L1MDa LINE L1 -4535 2186 1300 1583 171 3 40 chr3 213337511 213337833 -4699325 - AluJb SINE Alu -2 310 1 1726 185 3 0 chr3 213337835 213338138 -4699020 - AluSx SINE Alu -8 304 1 605 222 120 0 chr3 213338147 213338314 -4698844 - L1MB3 LINE L1 -1198 4948 4762 527 273 126 38 chr3 213339066 213339146 -4698012 - MIR SINE MIR -44 218 146 2019 132 3 0 chr3 213339146 213339441 -4697717 + AluSx SINE Alu 1 296 -16 527 273 126 38 chr3 213339441 213339543 -4697615 - MIR SINE MIR -116 146 20 275 271 164 8 chr3 213339578 213339700 -4697458 - MER5A DNA MER1_type -6 183 43 24 0 0 0 chr3 213339703 213339727 -4697431 + AT_rich Low_complexity Low_complexity 1 24 0 2070 86 23 20 chr3 213340091 213340392 -4696766 - AluSx SINE Alu -1 311 10 249 321 123 19 chr3 213341091 213341197 -4695961 + L3 LINE CR1 278 394 -1183 3259 254 28 15 chr3 213341314 213342199 -4694959 + L1MEc LINE L1 15 911 -5485 1139 174 0 5 chr3 213342199 213342389 -4694769 + AluJb SINE Alu 106 294 -18 860 182 0 0 chr3 213342415 213342563 -4694595 + FRAM SINE Alu 10 157 -19 194 191 43 0 chr3 213342572 213342619 -4694539 + L3 LINE CR1 937 985 -592 581 326 133 31 chr3 213342671 213343061 -4694097 + L3 LINE CR1 1144 1573 -4 332 323 15 8 chr3 213343235 213343368 -4693790 + (TATATG)n Simple_repeat Simple_repeat 6 139 0 325 278 45 30 chr3 213344301 213344434 -4692724 + L1ME3A LINE L1 6036 6170 0 533 258 127 20 chr3 213344620 213344872 -4692286 - L1MC5 LINE L1 -434 7527 7249 2090 93 10 0 chr3 213345147 213345436 -4691722 + AluSx SINE Alu 7 298 -14 389 216 86 9 chr3 213345639 213345755 -4691403 + L1ME3A LINE L1 6041 6165 -5 979 123 0 0 chr3 213345821 213345959 -4691199 + AluSg1 SINE Alu 1 138 -171 1474 91 5 5 chr3 213346075 213346284 -4690874 + AluSp SINE Alu 100 308 -5 21 0 0 0 chr3 213346299 213346320 -4690838 + AT_rich Low_complexity Low_complexity 1 21 0 2191 99 7 0 chr3 213346824 213347118 -4690040 - AluSq SINE Alu -17 296 1 1836 135 10 16 chr3 213347925 213348251 -4688907 - AluSx SINE Alu 0 312 1 1883 136 30 0 chr3 213348828 213349130 -4688028 + AluSx SINE Alu 1 311 -1 22 70 0 0 chr3 213349230 213349273 -4687885 + AT_rich Low_complexity Low_complexity 1 43 0 2481 64 0 3 chr3 213349551 213349863 -4687295 + AluY SINE Alu 1 311 0 1630 62 0 5 chr3 213350645 213350855 -4686303 + AluSg/x SINE Alu 89 297 -13 1642 120 0 47 chr3 213350859 213351176 -4685982 + AluY SINE Alu 2 303 -8 430 360 96 25 chr3 213352082 213352733 -4684425 - L2 LINE L2 -12 3260 2597 2097 124 6 43 chr3 213352993 213353043 -4684115 - MER1B DNA MER1_type -2374 336 286 2101 88 30 7 chr3 213353043 213353338 -4683820 - AluSq SINE Alu -11 302 1 2097 124 6 43 chr3 213353338 213353635 -4683523 - MER1B DNA MER1_type -2424 286 2 2463 165 54 10 chr3 213354181 213354665 -4682493 - LTR22 LTR ERVK -4 505 1 22 35 0 0 chr3 213355139 213355168 -4681990 + AT_rich Low_complexity Low_complexity 1 29 0 2351 50 7 3 chr3 213355216 213355515 -4681643 + AluY SINE Alu 1 300 -11 1291 263 94 97 chr3 213356291 213357427 -4679731 + HAL1 LINE L1 3 1137 -1370 2214 107 0 0 chr3 213357427 213357725 -4679433 + AluSx SINE Alu 6 303 -9 1291 263 94 97 chr3 213357725 213357794 -4679364 + HAL1 LINE L1 1137 1205 -1302 2129 166 58 18 chr3 213357825 213358223 -4678935 + L1M3f LINE L1 3 416 -4912 2141 108 0 0 chr3 213358692 213358988 -4678170 - AluSx SINE Alu -16 296 1 2071 96 3 0 chr3 213359332 213359636 -4677522 - AluSx SINE Alu 0 305 1 428 35 17 0 chr3 213359710 213359768 -4677390 + (TA)n Simple_repeat Simple_repeat 1 59 0 2385 84 0 0 chr3 213359782 213360090 -4677068 - AluSg SINE Alu -2 308 1 1836 135 10 16 chr3 213360897 213361223 -4675935 - AluSx SINE Alu 0 312 1 2029 136 30 0 chr3 213361800 213362102 -4675056 + AluSx SINE Alu 1 311 -1 22 70 0 0 chr3 213362202 213362245 -4674913 + AT_rich Low_complexity Low_complexity 1 43 0 2108 84 0 22 chr3 213362523 213362797 -4674361 + AluY SINE Alu 1 268 -43 820 226 23 6 chr3 213363069 213363246 -4673912 + LTR41 LTR ERVL 3 182 -591 1081 202 64 84 chr3 213363378 213363735 -4673423 + LTR41 LTR ERVL 417 766 -7 2066 97 29 52 chr3 213363804 213363912 -4673246 - AluSp SINE Alu -11 302 193 230 0 0 32 chr3 213363912 213363943 -4673215 + (TCTCCC)n Simple_repeat Simple_repeat 1 30 0 10228 25 8 158 chr3 213363943 213365508 -4671650 + SVA Other Other 57 1386 0 2066 97 29 52 chr3 213365508 213365707 -4671451 - AluSp SINE Alu -118 195 1 2225 119 0 0 chr3 213366113 213366416 -4670742 + AluSx SINE Alu 3 305 -7 664 152 50 0 chr3 213366430 213366529 -4670629 + FLAM_A SINE Alu 13 116 -26 1392 187 119 66 chr3 213366532 213366837 -4670321 + L1MB7 LINE L1 5785 6115 -69 2342 104 0 22 chr3 213366837 213367154 -4670004 + AluSg SINE Alu 1 310 0 1392 187 119 66 chr3 213367154 213367227 -4669931 + L1MB7 LINE L1 6115 6183 -1 479 323 26 22 chr3 213367319 213367545 -4669613 + MARNA DNA Mariner 347 573 -13 1656 172 3 14 chr3 213367697 213368016 -4669142 + AluSx SINE Alu 1 316 0 310 264 0 0 chr3 213368205 213368277 -4668881 + MER81 DNA DNA 43 114 0 473 299 87 60 chr3 213368277 213368575 -4668583 + L2 LINE L2 2967 3272 0 339 256 72 24 chr3 213369063 213369188 -4667970 - L1ME4a LINE L1 0 6121 5991 2618 120 99 61 chr3 213369260 213369785 -4667373 + LTR10A LTR ERV1 1 545 -64 1575 143 4 16 chr3 213369795 213370046 -4667112 - AluSx SINE Alu -7 305 58 21 36 0 0 chr3 213370194 213370222 -4666936 + AT_rich Low_complexity Low_complexity 1 28 0 578 92 13 0 chr3 213370440 213370516 -4666642 - AluSx SINE Alu -234 78 2 2231 73 4 4 chr3 213370818 213371093 -4666065 + AluSq SINE Alu 3 277 -36 378 0 0 0 chr3 213371098 213371140 -4666018 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 405 246 49 7 chr3 213371513 213371655 -4665503 + LTR67 LTR ERVL 409 556 -1 186 198 0 148 chr3 213372304 213372385 -4664773 - L2 LINE L2 -1776 1538 1470 2221 88 14 0 chr3 213372643 213372926 -4664232 - AluSx SINE Alu -4 308 22 22 0 0 0 chr3 213373251 213373273 -4663885 + AT_rich Low_complexity Low_complexity 1 22 0 2272 96 3 29 chr3 213375648 213375960 -4661198 + AluSx SINE Alu 1 304 -8 274 260 163 41 chr3 213375986 213376109 -4661049 - MIR3 SINE MIR -66 142 5 2421 91 0 13 chr3 213376265 213376573 -4660585 - AluSx SINE Alu -8 304 1 239 252 217 26 chr3 213376723 213376838 -4660320 + MIR SINE MIR 13 149 -113 355 335 137 4 chr3 213377134 213377361 -4659797 + MIR SINE MIR 6 262 0 1991 116 51 3 chr3 213377525 213377817 -4659341 - AluSx SINE Alu -6 306 1 2467 85 0 0 chr3 213378029 213378335 -4658823 - AluSx SINE Alu -6 306 1 711 196 146 50 chr3 213378680 213378899 -4658259 - MIR SINE MIR -21 241 2 182 256 23 0 chr3 213379020 213379063 -4658095 + L2 LINE L2 3262 3305 -8 2197 111 17 0 chr3 213379068 213379365 -4657793 - AluSg SINE Alu -8 302 1 2437 87 7 0 chr3 213379694 213380004 -4657154 - AluSx SINE Alu 0 312 1 1972 161 7 0 chr3 213380004 213380302 -4656856 - AluJb SINE Alu -11 301 1 204 292 0 0 chr3 213381102 213381150 -4656008 + L2 LINE L2 3225 3272 0 312 178 96 0 chr3 213382275 213382348 -4654810 - MER53 DNA DNA -87 102 23 * 338 95 111 0 chr3 213382286 213382349 -4654809 + MER53 DNA DNA 109 178 -11 385 318 99 21 chr3 213382692 213382934 -4654224 + MIR SINE MIR 2 262 0 577 236 49 48 chr3 213383305 213383460 -4653698 + LTR33A LTR ERVL 101 254 -269 2288 115 3 0 chr3 213383460 213383772 -4653386 - AluSq SINE Alu 0 313 1 577 236 49 48 chr3 213383772 213383964 -4653194 + LTR33A LTR ERVL 254 523 0 841 134 0 22 chr3 213384679 213384813 -4652345 + AluJb SINE Alu 4 134 -178 2296 86 14 0 chr3 213384813 213385103 -4652055 + AluSx SINE Alu 1 294 -18 2758 20 3 0 chr3 213385487 213385788 -4651370 + AluY SINE Alu 1 302 -9 1580 107 4 0 chr3 213385916 213386150 -4651008 - L1MA3 LINE L1 0 6305 6071 1494 204 26 16 chr3 213386150 213386329 -4650829 - AluJb SINE Alu -1 311 126 2221 127 0 0 chr3 213386329 213386636 -4650522 - AluSx SINE Alu -5 307 1 1494 204 26 16 chr3 213386636 213386764 -4650394 - AluJb SINE Alu -186 126 1 2302 119 3 0 chr3 213386766 213387076 -4650082 - AluSq SINE Alu 0 313 3 216 0 0 0 chr3 213387079 213387103 -4650055 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2196 88 3 14 chr3 213387106 213387391 -4649767 - AluSc SINE Alu -27 282 1 1588 188 75 34 chr3 213387611 213387858 -4649300 + LTR37B LTR ERV1 10 284 -184 1715 180 28 3 chr3 213387858 213388147 -4649011 - AluSx SINE Alu -16 296 1 1588 188 75 34 chr3 213388147 213388340 -4648818 + LTR37B LTR ERV1 284 468 0 261 154 0 0 chr3 213388379 213388418 -4648740 + Alu SINE Alu 1 39 -263 1819 173 3 16 chr3 213388420 213388733 -4648425 + AluJb SINE Alu 1 309 -3 1824 161 3 0 chr3 213388771 213389069 -4648089 - AluSg SINE Alu -9 301 3 216 0 0 0 chr3 213389072 213389096 -4648062 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1092 76 0 21 chr3 213389099 213389244 -4647914 - AluSc SINE Alu -27 282 141 1985 137 10 10 chr3 213389719 213390002 -4647156 + AluSx SINE Alu 1 286 -26 207 88 0 0 chr3 213390002 213390036 -4647122 + (CAATA)n Simple_repeat Simple_repeat 2 35 0 887 172 0 53 chr3 213390092 213390261 -4646897 - FAM SINE Alu -16 169 10 1426 155 22 128 chr3 213390271 213390383 -4646775 + L1MB4 LINE L1 5817 5939 -241 1673 201 0 3 chr3 213390383 213390666 -4646492 - AluJo SINE Alu -30 282 1 1426 155 22 128 chr3 213390666 213390795 -4646363 + L1MB4 LINE L1 5939 6000 -180 2327 86 0 23 chr3 213390795 213391099 -4646059 - AluY SINE Alu -14 297 1 1426 155 22 128 chr3 213391099 213391263 -4645895 + L1MB4 LINE L1 6000 6180 0 1322 181 40 23 chr3 213391292 213391591 -4645567 - AluJb SINE Alu -8 304 1 385 86 143 0 chr3 213391907 213391977 -4645181 + MADE1 DNA Mariner 1 80 0 2433 65 0 3 chr3 213392416 213392707 -4644451 - AluSc SINE Alu -10 299 10 2138 109 51 3 chr3 213394549 213394843 -4642315 + AluSx SINE Alu 1 308 -4 1255 67 61 0 chr3 213394846 213395011 -4642147 + AluSg/x SINE Alu 132 306 -6 433 311 36 52 chr3 213395176 213395369 -4641789 + MIR3 SINE MIR 14 203 -5 423 164 14 0 chr3 213395695 213395768 -4641390 - AluJ/FLAM SINE Alu -237 75 2 282 227 284 52 chr3 213395931 213396125 -4641033 - L1MC4 LINE L1 -12 8030 7792 2286 100 6 28 chr3 213396250 213396570 -4640588 + AluSp SINE Alu 1 313 0 561 239 117 27 chr3 213396769 213396991 -4640167 - L1ME3 LINE L1 -22 6140 5899 1089 69 0 0 chr3 213396992 213397123 -4640035 + AluSg1 SINE Alu 1 131 -178 871 253 62 0 chr3 213397133 213397406 -4639752 - L1ME3 LINE L1 -252 5910 5621 859 297 50 11 chr3 213397403 213397767 -4639391 - L1ME3 LINE L1 -1749 4397 4020 * 576 88 12 0 chr3 213397984 213398064 -4639094 + AluSp/q SINE Alu 213 293 -20 2130 102 3 44 chr3 213398522 213398837 -4638321 - AluSx SINE Alu -10 302 1 575 153 9 36 chr3 213399646 213399757 -4637401 + AluSg/x SINE Alu 190 297 -15 236 330 38 9 chr3 213399762 213399868 -4637290 - L2 LINE L2 -610 2704 2596 2693 45 0 7 chr3 213400095 213400404 -4636754 - AluY SINE Alu -4 307 1 2336 83 13 3 chr3 213400404 213400704 -4636454 - AluSp SINE Alu -10 303 1 469 289 62 9 chr3 213400706 213400931 -4636227 - L1ME LINE L1 -578 5584 5348 2192 113 14 0 chr3 213401154 213401447 -4635711 - AluSg SINE Alu -13 297 1 27 0 0 0 chr3 213401450 213401477 -4635681 + AT_rich Low_complexity Low_complexity 1 27 0 601 77 11 44 chr3 213401616 213401707 -4635451 + AluSp/q SINE Alu 213 300 -13 426 260 80 7 chr3 213401713 213401863 -4635295 - L1MC/D LINE L1 -2066 5742 5582 761 262 234 30 chr3 213401882 213402283 -4634875 - L2 LINE L2 -1 3312 2830 663 231 69 25 chr3 213402309 213402502 -4634656 - L1MC/D LINE L1 -2240 5568 5364 1958 99 22 76 chr3 213402502 213402816 -4634342 - AluSx SINE Alu -15 297 1 205 196 71 0 chr3 213403019 213403075 -4634083 + C-rich Low_complexity Low_complexity 2 61 0 353 303 21 21 chr3 213403266 213403408 -4633750 + C-rich Low_complexity Low_complexity 2 143 0 2034 230 11 6 chr3 213403661 213404208 -4632950 + L1 LINE L1 4752 5301 -845 368 316 153 46 chr3 213404254 213404580 -4632578 - L1ME1 LINE L1 -237 5929 5569 22 35 0 0 chr3 213404870 213404899 -4632259 + AT_rich Low_complexity Low_complexity 1 29 0 334 188 82 12 chr3 213405065 213405150 -4632008 - MLT1H LTR MaLR -29 566 476 * 465 254 70 36 chr3 213405146 213405420 -4631738 - MLT1H LTR MaLR -186 356 100 1473 186 13 131 chr3 213405421 213405471 -4631687 - MLT1C LTR MaLR -2 465 411 2277 88 17 0 chr3 213405471 213405767 -4631391 - AluSx SINE Alu -11 301 1 1473 186 13 131 chr3 213405767 213406243 -4630915 - MLT1C LTR MaLR -56 411 1 769 242 201 4 chr3 213406311 213406580 -4630578 - LTR16C LTR ERVL -72 419 98 1548 175 11 18 chr3 213406796 213407082 -4630076 + AluJo SINE Alu 15 298 -14 2060 130 0 3 chr3 213407154 213407438 -4629720 - AluSx SINE Alu -29 283 1 4281 225 48 6 chr3 213407975 213408994 -4628164 + L1M1 LINE L1 582 1643 -5922 1817 144 3 0 chr3 213409851 213410143 -4627015 - L1PA8 LINE L1 -1 6171 5879 9843 66 7 2 chr3 213410259 213411646 -4625512 + L1P LINE L1 1024 2417 -3729 535 157 12 0 chr3 213411756 213411839 -4625319 - AluSg SINE Alu -225 85 2 331 233 86 9 chr3 213411905 213412021 -4625137 - L1ME3A LINE L1 -5 6165 6041 2319 92 7 0 chr3 213412224 213412519 -4624639 - AluSx SINE Alu -14 298 2 365 123 35 0 chr3 213413044 213413101 -4624057 + AluJo/FLAM SINE Alu 60 118 -184 2122 88 3 10 chr3 213413101 213413395 -4623763 - AluSc SINE Alu -17 292 1 2024 102 3 3 chr3 213413659 213413964 -4623194 - AluSx SINE Alu 0 305 1 873 135 15 0 chr3 213414373 213414506 -4622652 + AluSq/x SINE Alu 1 135 -178 2381 80 0 0 chr3 213414506 213414818 -4622340 + AluSx SINE Alu 1 312 0 250 289 0 0 chr3 213414818 213414870 -4622288 + polypurine Low_complexity Low_complexity 2 53 0 181 309 246 10 chr3 213415703 213415910 -4621248 - L3 LINE CR1 -15 1562 1307 406 223 94 98 chr3 213416224 213416279 -4620879 - L1MC4 LINE L1 -176 7866 7812 2225 116 0 0 chr3 213416279 213416590 -4620568 + AluSx SINE Alu 1 311 -1 406 223 94 98 chr3 213416590 213416790 -4620368 - L1MC4 LINE L1 -230 7812 7612 373 86 17 0 chr3 213417965 213418023 -4619135 + Alu SINE Alu 1 59 -244 312 317 92 8 chr3 213418159 213418279 -4618879 + L1MC4a LINE L1 6043 6172 -1636 694 164 0 0 chr3 213418280 213418384 -4618774 + AluJb SINE Alu 2 105 -207 1576 215 44 26 chr3 213418384 213418882 -4618276 + LTR28 LTR ERV1 4 1231 -137 209 294 163 11 chr3 213419034 213419126 -4618032 - L2 LINE L2 -3 3269 3164 367 118 0 0 chr3 213419860 213419911 -4617247 + FLAM SINE Alu 64 114 -19 234 0 0 0 chr3 213419911 213419937 -4617221 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2232 60 0 7 chr3 213419941 213420223 -4616935 - AluSg SINE Alu -30 280 1 777 284 22 31 chr3 213420224 213420446 -4616712 - MLT1L LTR MaLR -353 262 43 195 129 0 0 chr3 213421141 213421172 -4615986 + (TC)n Simple_repeat Simple_repeat 2 32 0 1458 163 42 0 chr3 213421287 213421551 -4615607 - AluJb SINE Alu -37 275 1 2002 143 0 0 chr3 213421561 213421862 -4615296 - AluSx SINE Alu -11 301 1 405 271 69 79 chr3 213421930 213422128 -4615030 + L1MC4 LINE L1 7612 7808 -234 1989 147 0 0 chr3 213422128 213422440 -4614718 - AluSx SINE Alu 0 312 1 405 271 69 79 chr3 213422440 213422532 -4614626 + L1MC4 LINE L1 7808 7899 -143 194 269 142 30 chr3 213422872 213422973 -4614185 + L2 LINE L2 2262 2383 -931 2200 86 0 0 chr3 213422973 213423264 -4613894 - AluSx SINE Alu -21 291 1 194 269 142 30 chr3 213423264 213423296 -4613862 + L2 LINE L2 2383 2410 -904 868 172 47 6 chr3 213425027 213425196 -4611962 + AluSg/x SINE Alu 137 312 0 21 0 0 0 chr3 213425196 213425217 -4611941 + AT_rich Low_complexity Low_complexity 1 21 0 2276 101 0 0 chr3 213425610 213425917 -4611241 - AluSx SINE Alu -5 307 1 351 0 0 0 chr3 213425932 213425971 -4611187 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1716 137 42 92 chr3 213426076 213426135 -4611023 - L1PB4 LINE L1 -4 6152 6092 2110 121 0 6 chr3 213426135 213426449 -4610709 - AluSx SINE Alu 0 312 1 1716 137 42 92 chr3 213426449 213426493 -4610665 - L1PB4 LINE L1 -64 6092 5736 890 237 62 65 chr3 213426493 213426723 -4610435 - L1PA10 LINE L1 -100 6068 5838 2104 117 0 0 chr3 213426723 213427021 -4610137 - AluSx SINE Alu -14 298 1 890 237 62 65 chr3 213427021 213427127 -4610031 - L1PA10 LINE L1 -330 5838 5733 257 311 25 33 chr3 213427116 213427238 -4609920 - L1MC4 LINE L1 -547 7495 7375 * 2164 92 0 55 chr3 213427390 213427717 -4609441 - AluSp SINE Alu -4 309 1 1042 183 44 6 chr3 213427788 213428058 -4609100 - MLT2D LTR ERVL -40 424 50 272 224 0 17 chr3 213428106 213428164 -4608994 - MLT2D LTR ERVL -357 57 1 483 266 47 0 chr3 213428184 213428312 -4608846 + MIR3 SINE MIR 60 193 -15 2136 98 7 3 chr3 213428328 213428624 -4608534 + AluSq SINE Alu 1 297 -16 2121 92 0 3 chr3 213428776 213429069 -4608089 + AluSx SINE Alu 1 292 -20 239 0 32 0 chr3 213429069 213429100 -4608058 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 219 318 9 36 chr3 213429509 213429619 -4607539 + L2 LINE L2 2374 2480 -834 419 51 0 17 chr3 213429850 213429909 -4607249 + (TCC)n Simple_repeat Simple_repeat 1 58 0 821 188 6 6 chr3 213429909 213430069 -4607089 - AluJo SINE Alu -32 280 121 1585 161 52 10 chr3 213430074 213430365 -4606793 - AluJb SINE Alu 0 312 10 2423 69 0 0 chr3 213430501 213430805 -4606353 - AluSg SINE Alu -6 304 1 615 146 0 0 chr3 213431391 213431480 -4605678 - FLAM_A SINE Alu -53 89 1 2256 98 0 0 chr3 213431491 213431787 -4605371 - AluSq SINE Alu -17 296 1 2414 182 26 30 chr3 213432111 213432502 -4604656 + MLT1C LTR MaLR 1 391 -76 2287 83 0 0 chr3 213432502 213432803 -4604355 - AluSx SINE Alu -10 302 2 2414 182 26 30 chr3 213432803 213432873 -4604285 + MLT1C LTR MaLR 391 460 -7 771 261 42 42 chr3 213433040 213433300 -4603858 + MIR SINE MIR 3 262 0 2189 98 3 0 chr3 213434743 213435040 -4602118 - AluSp SINE Alu -13 300 3 297 286 185 22 chr3 213435262 213435489 -4601669 - LTR33 LTR ERVL -21 500 237 274 231 0 0 chr3 213435607 213435672 -4601486 - LTR33 LTR ERVL -453 68 4 1996 110 0 28 chr3 213435716 213436034 -4601124 - AluSx SINE Alu -3 309 1 1231 285 107 5 chr3 213436423 213436834 -4600324 - MLT1K LTR MaLR 0 588 136 3423 18 0 15 chr3 213437115 213437527 -4599631 + SVA Other Other 996 1386 0 207 272 86 0 chr3 213437762 213437843 -4599315 + MIR3 SINE MIR 116 203 -5 1212 184 13 1 chr3 213437975 213438303 -4598855 + L1M3 LINE L1 5155 5484 -687 2310 87 0 0 chr3 213438308 213438640 -4598518 + AluSc SINE Alu 1 332 0 885 238 0 0 chr3 213438651 213438840 -4598318 + L1M3 LINE L1 5479 5667 -516 2092 88 0 0 chr3 213438991 213439263 -4597895 + AluSg SINE Alu 27 298 -12 719 130 214 0 chr3 213439263 213439394 -4597764 + AluSc SINE Alu 132 290 -19 23 33 0 0 chr3 213439444 213439474 -4597684 + AT_rich Low_complexity Low_complexity 1 30 0 777 208 0 0 chr3 213439509 213439639 -4597519 + FLAM_A SINE Alu 1 130 -3 638 251 22 28 chr3 213440332 213440511 -4596647 + MER5B DNA MER1_type 1 178 0 25 0 0 0 chr3 213442409 213442434 -4594724 + AT_rich Low_complexity Low_complexity 1 25 0 1065 87 33 0 chr3 213443332 213443482 -4593676 - L1PB1 LINE L1 -32 6119 5965 2234 89 0 3 chr3 213443482 213443785 -4593373 - AluSc SINE Alu -7 302 1 1441 252 75 23 chr3 213443785 213444668 -4592490 - L1M4 LINE L1 -930 5216 4380 647 81 0 0 chr3 213444668 213444755 -4592403 + (CCCG)n Simple_repeat Simple_repeat 3 89 0 1441 252 75 23 chr3 213444755 213444768 -4592390 - L1M4 LINE L1 -1766 4380 4369 1849 124 4 0 chr3 213444768 213445041 -4592117 - AluSx SINE Alu -38 274 1 1441 252 75 23 chr3 213445041 213445171 -4591987 - L1M4 LINE L1 -1777 4369 4106 474 109 0 0 chr3 213445195 213445259 -4591899 - AluS SINE Alu -229 84 21 2754 189 23 85 chr3 213445316 213445873 -4591285 + L1MA6 LINE L1 2876 3466 -2834 877 167 0 0 chr3 213445873 213446005 -4591153 + FLAM_C SINE Alu 2 133 0 2754 189 23 85 chr3 213446005 213446464 -4590694 + L1MA6 LINE L1 3466 3952 -2348 5257 172 24 35 chr3 213446464 213447547 -4589611 - MER11C LTR ERVK 0 1071 1 2754 189 23 85 chr3 213447547 213447563 -4589595 + L1MA6 LINE L1 3952 6170 -130 548 193 123 0 chr3 213447576 213447690 -4589468 + FLAM_A SINE Alu 1 128 -5 573 139 52 0 chr3 213447743 213447858 -4589300 + L1MA8 LINE L1 6171 6291 0 1628 190 3 0 chr3 213447862 213448162 -4588996 + AluJo SINE Alu 1 301 -11 387 250 83 21 chr3 213448170 213448314 -4588844 + L1M4 LINE L1 3202 3354 -2792 2076 102 0 7 chr3 213448315 213448610 -4588548 + AluSg SINE Alu 1 293 -17 2004 132 78 25 chr3 213448619 213448976 -4588182 - L1MD1 LINE L1 -414 5828 5453 2022 118 3 13 chr3 213449153 213449467 -4587691 - AluSx SINE Alu -1 311 1 218 184 0 0 chr3 213449489 213449527 -4587631 - MER5B DNA MER1_type -140 38 1 1316 109 0 0 chr3 213449699 213449891 -4587267 - AluSx SINE Alu -15 297 106 818 128 0 0 chr3 213450204 213450321 -4586837 - AluSx SINE Alu -196 117 1 2149 107 7 0 chr3 213450681 213450989 -4586169 + AluSx SINE Alu 1 310 -2 4721 128 53 65 chr3 213451277 213452670 -4584488 - pTR5 LTR ERV1 0 2438 743 322 293 98 17 chr3 213452760 213452961 -4584197 - MIR SINE MIR -22 240 14 629 162 110 19 chr3 213453244 213453398 -4583760 - MER53 DNA DNA 0 189 22 3664 181 33 35 chr3 213453404 213453540 -4583618 - L1MB3 LINE L1 -1 6182 6047 755 149 8 15 chr3 213453540 213453674 -4583484 - FLAM_C SINE Alu 0 133 1 3664 181 33 35 chr3 213453674 213454320 -4582838 - L1MB3 LINE L1 -136 6047 5401 289 327 47 81 chr3 213454822 213455033 -4582125 - L2 LINE L2 -82 3190 2987 1899 113 25 0 chr3 213455072 213455369 -4581789 - AluSx SINE Alu 0 304 1 2213 106 0 0 chr3 213455422 213455723 -4581435 - AluSg SINE Alu -9 301 1 209 203 43 0 chr3 213455907 213455976 -4581182 + (TTTAA)n Simple_repeat Simple_repeat 4 75 0 1875 155 0 0 chr3 213456483 213456780 -4580378 - AluJb SINE Alu -7 305 9 435 214 0 0 chr3 213457020 213457109 -4580049 + FLAM_A SINE Alu 22 110 -32 2106 113 3 3 chr3 213457114 213457425 -4579733 - AluSx SINE Alu -1 311 1 2166 87 0 3 chr3 213458865 213459165 -4577993 - AluSx SINE Alu -13 299 1 264 77 0 0 chr3 213459388 213459427 -4577731 + (T)n Simple_repeat Simple_repeat 1 39 0 242 224 52 0 chr3 213459521 213459579 -4577579 - L1MB8 LINE L1 -6 6172 6112 613 141 10 0 chr3 213459580 213459679 -4577479 + AluJ/FLAM SINE Alu 2 101 -211 3155 176 70 15 chr3 213459753 213460435 -4576723 - L1MB5 LINE L1 -17 6157 5438 2435 38 0 0 chr3 213460459 213460752 -4576406 + AluY SINE Alu 1 293 -18 4168 185 17 17 chr3 213460824 213461668 -4575490 - L1MB3 LINE L1 -42 6141 5296 1394 120 0 0 chr3 213461735 213461927 -4575231 - AluSc SINE Alu -115 194 3 374 125 0 16 chr3 213461928 213461992 -4575166 - L1ME2 LINE L1 -188 5976 5914 486 212 121 0 chr3 213462000 213462099 -4575059 - MLT1C LTR MaLR -8 459 349 771 94 0 0 chr3 213462217 213462334 -4574824 + AluY SINE Alu 193 309 -2 2321 135 16 70 chr3 213462560 213462785 -4574373 + LTR57 LTR ERVL 1 194 -217 2312 86 10 0 chr3 213462785 213463077 -4574081 + AluSc SINE Alu 1 295 -14 2321 135 16 70 chr3 213463077 213463281 -4573877 + LTR57 LTR ERVL 194 407 -4 414 221 75 68 chr3 213463325 213463469 -4573689 - L1ME2 LINE L1 -222 5944 5800 3411 122 27 10 chr3 213463469 213463987 -4573171 + MER1A DNA MER1_type 1 527 0 414 221 75 68 chr3 213463987 213464114 -4573044 - L1ME2 LINE L1 -366 5800 5675 2270 110 0 0 chr3 213464437 213464737 -4572421 + AluSx SINE Alu 1 300 -12 283 295 65 40 chr3 213465122 213465400 -4571758 - L1ME2 LINE L1 -1127 5019 4735 1121 193 26 95 chr3 213465404 213465710 -4571448 - AluJo SINE Alu -14 298 14 1337 164 5 14 chr3 213465760 213465980 -4571178 - AluJo SINE Alu -94 218 1 327 241 38 93 chr3 213466007 213466244 -4570914 - L1ME2 LINE L1 -1431 4715 4492 2033 145 0 10 chr3 213466704 213466994 -4570164 + AluSx SINE Alu 1 287 -25 183 42 0 0 chr3 213466997 213467021 -4570137 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1070 212 29 20 chr3 213467035 213467341 -4569817 - L1M4 LINE L1 -984 5162 4849 222 172 0 103 chr3 213469190 213469228 -4567930 + MIR SINE MIR 87 119 -89 2601 56 0 3 chr3 213469228 213469532 -4567626 - AluY SINE Alu -8 303 1 222 172 0 103 chr3 213469532 213469551 -4567607 + MIR SINE MIR 119 138 -70 345 245 151 0 chr3 213469651 213469800 -4567358 - L1M LINE L1 -757 5389 5239 * 968 198 208 31 chr3 213469796 213469956 -4567202 - L1M4 LINE L1 -951 5195 5065 2180 104 10 0 chr3 213469956 213470244 -4566914 - AluSg SINE Alu -19 291 1 968 198 208 31 chr3 213470244 213470472 -4566686 - L1M4 LINE L1 -1081 5065 4738 2217 117 0 3 chr3 213470473 213470771 -4566387 - AluSx SINE Alu -15 297 1 720 181 39 0 chr3 213470784 213470911 -4566247 - FLAM_C SINE Alu -10 133 2 708 240 6 11 chr3 213470911 213471094 -4566064 - L1M4 LINE L1 -1490 4656 4475 1436 192 49 65 chr3 213471094 213471464 -4565694 + MLT1C LTR MaLR 102 465 -2 21 0 0 0 chr3 213471538 213471559 -4565599 + AT_rich Low_complexity Low_complexity 1 21 0 1808 230 157 22 chr3 213471801 213472566 -4564592 + L1MC4 LINE L1 7173 8040 -2 1834 155 0 0 chr3 213472601 213472879 -4564279 - AluJb SINE Alu -20 292 15 21 0 0 0 chr3 213473147 213473168 -4563990 + AT_rich Low_complexity Low_complexity 1 21 0 1781 168 16 10 chr3 213473486 213473796 -4563362 + AluJb SINE Alu 1 312 0 2110 102 27 7 chr3 213473812 213474105 -4563053 + AluSq SINE Alu 1 299 -14 862 200 12 0 chr3 213474116 213474276 -4562882 + FRAM SINE Alu 2 163 -13 2063 123 0 7 chr3 213474818 213475140 -4562018 - AluSx SINE Alu 0 320 1 823 133 0 31 chr3 213475289 213475417 -4561741 - FLAM_C SINE Alu -9 124 1 1663 195 41 26 chr3 213475474 213475863 -4561295 - L1MB3 LINE L1 -9 6174 5780 324 183 33 0 chr3 213475910 213475970 -4561188 - L1MB3 LINE L1 -722 5452 5391 2107 105 14 3 chr3 213475973 213476267 -4560891 - AluSx SINE Alu -15 297 1 2278 82 0 0 chr3 213476293 213476601 -4560557 - AluSg SINE Alu 0 308 1 319 302 12 23 chr3 213476617 213476703 -4560455 - Charlie1 DNA MER1_type -2676 85 1 386 228 90 141 chr3 213476901 213477025 -4560133 + Charlie8 DNA MER1_type 10 116 -2301 709 224 0 7 chr3 213477025 213477172 -4559986 - L1PB4 LINE L1 0 6156 6011 386 228 90 141 chr3 213477172 213477302 -4559856 + Charlie8 DNA MER1_type 116 251 -2166 2104 136 0 0 chr3 213478007 213478301 -4558857 + AluSx SINE Alu 1 294 -18 314 293 95 0 chr3 213478323 213478439 -4558719 - HAL1 LINE L1 -2373 134 8 1960 40 4 0 chr3 213478576 213478801 -4558357 - AluY SINE Alu -85 226 1 1610 167 113 8 chr3 213478802 213479156 -4558002 + L1MB4 LINE L1 5789 6179 -1 260 174 188 0 chr3 213479737 213479806 -4557352 - MIR SINE MIR -62 200 119 1038 277 36 89 chr3 213479876 213480492 -4556666 + L1ME LINE L1 255 902 -5168 2463 68 6 19 chr3 213480492 213480803 -4556355 + AluSc SINE Alu 1 307 -2 1038 277 36 89 chr3 213480803 213480941 -4556217 + L1ME LINE L1 902 961 -5109 1754 155 3 47 chr3 213480941 213481258 -4555900 + AluJb SINE Alu 1 303 -9 1038 277 36 89 chr3 213481258 213481355 -4555803 + L1ME LINE L1 961 1062 -5008 359 173 68 120 chr3 213481350 213481402 -4555756 + L1ME LINE L1 2069 2122 -3958 * 2134 60 6 73 chr3 213481402 213481518 -4555640 + AluSp SINE Alu 1 123 -190 2278 103 6 19 chr3 213481518 213481830 -4555328 + AluSq SINE Alu 2 309 -4 2134 60 6 73 chr3 213481830 213482028 -4555130 + AluSp SINE Alu 123 294 -19 359 173 68 120 chr3 213482028 213482108 -4555050 + L1ME LINE L1 2122 2194 -3886 1410 235 53 5 chr3 213482120 213482537 -4554621 + L1ME LINE L1 2308 2744 -3336 1460 108 75 0 chr3 213483114 213483328 -4553830 + MER30 DNA MER1_type 1 230 0 589 237 82 0 chr3 213483344 213483479 -4553679 + MER58A DNA MER1_type 9 154 0 482 141 50 0 chr3 213483501 213483590 -4553568 + MER58B DNA MER1_type 114 341 0 2236 103 10 0 chr3 213483690 213483981 -4553177 + AluSg1 SINE Alu 1 294 -15 188 35 35 0 chr3 213484083 213484112 -4553046 + (TAAAAA)n Simple_repeat Simple_repeat 2 31 0 27 49 0 0 chr3 213484594 213484635 -4552523 + AT_rich Low_complexity Low_complexity 1 41 0 876 185 22 31 chr3 213484846 213485068 -4552090 + L1MC5 LINE L1 7696 7915 -46 925 188 0 0 chr3 213485470 213485624 -4551534 - FRAM SINE Alu -23 153 1 215 235 0 20 chr3 213485728 213485779 -4551379 - MIR3 SINE MIR -7 201 152 2015 147 3 3 chr3 213486048 213486360 -4550798 + AluSx SINE Alu 1 312 0 23 0 0 0 chr3 213486448 213486471 -4550687 + AT_rich Low_complexity Low_complexity 1 23 0 2446 82 0 7 chr3 213486547 213486851 -4550307 - AluSx SINE Alu -10 302 1 856 221 93 45 chr3 213487407 213487783 -4549375 + L1MC5 LINE L1 7354 7747 -214 2212 115 10 3 chr3 213487792 213488096 -4549062 + AluSc SINE Alu 1 306 -3 258 305 99 8 chr3 213488746 213488877 -4548281 + L2 LINE L2 2239 2381 -933 1384 122 14 33 chr3 213488882 213489095 -4548063 + AluJo SINE Alu 84 292 -20 403 281 179 66 chr3 213489125 213489815 -4547343 + L2 LINE L2 2442 3233 -39 22 0 0 0 chr3 213489817 213489839 -4547319 + AT_rich Low_complexity Low_complexity 1 22 0 1723 142 8 4 chr3 213490499 213490766 -4546392 + AluJo SINE Alu 1 268 -44 2537 65 3 0 chr3 213491015 213491324 -4545834 + AluY SINE Alu 1 310 -1 1986 72 102 0 chr3 213491494 213491759 -4545399 + AluSp SINE Alu 7 298 -15 25 0 0 0 chr3 213492925 213492950 -4544208 + GC_rich Low_complexity Low_complexity 1 25 0 350 269 0 15 chr3 213492964 213493098 -4544060 + (CCG)n Simple_repeat Simple_repeat 3 134 0 24 53 0 0 chr3 213493180 213493218 -4543940 + GC_rich Low_complexity Low_complexity 1 38 0 945 161 100 6 chr3 213494057 213494237 -4542921 + AluJb SINE Alu 85 281 -31 324 0 0 0 chr3 213494237 213494273 -4542885 + (CA)n Simple_repeat Simple_repeat 1 36 0 244 215 56 56 chr3 213494362 213494469 -4542689 - MIR SINE MIR 0 262 156 2414 88 0 3 chr3 213495311 213495616 -4541542 + AluSx SINE Alu 1 304 -8 1972 152 7 0 chr3 213495637 213495939 -4541219 + AluJb SINE Alu 1 304 -8 1887 97 39 12 chr3 213496473 213496732 -4540426 - AluSx SINE Alu -46 266 1 1550 126 129 15 chr3 213497362 213497633 -4539525 + AluJb SINE Alu 1 302 0 2204 125 0 0 chr3 213498153 213498449 -4538709 + AluSx SINE Alu 1 296 -16 1199 167 0 50 chr3 213498967 213499189 -4537969 + AluJb SINE Alu 87 297 -15 322 214 87 0 chr3 213499222 213499325 -4537833 + MIR SINE MIR 85 196 -66 890 179 11 43 chr3 213499405 213499463 -4537695 - MER5A DNA MER1_type -4 185 127 2266 105 3 3 chr3 213499463 213499776 -4537382 + AluSq SINE Alu 1 313 0 890 179 11 43 chr3 213499776 213499901 -4537257 - MER5A DNA MER1_type -62 127 8 483 293 211 0 chr3 213499959 213500167 -4536991 - MIR SINE MIR 0 262 11 23 33 0 0 chr3 213500207 213500237 -4536921 + AT_rich Low_complexity Low_complexity 1 30 0 22 88 0 0 chr3 213500390 213500447 -4536711 + AT_rich Low_complexity Low_complexity 1 57 0 2317 93 20 0 chr3 213501488 213501788 -4535370 + AluSx SINE Alu 1 306 -6 206 349 55 0 chr3 213501930 213502039 -4535119 + L3 LINE CR1 1337 1451 -126 21 0 0 0 chr3 213502127 213502148 -4535010 + AT_rich Low_complexity Low_complexity 1 21 0 297 275 110 18 chr3 213502554 213502663 -4534495 + MER20 DNA MER1_type 94 212 -7 1882 153 0 3 chr3 213503531 213503813 -4533345 + AluJb SINE Alu 14 294 -18 2089 141 10 0 chr3 213503948 213504254 -4532904 + AluJb SINE Alu 1 309 -3 1623 153 37 17 chr3 213504469 213504763 -4532395 - AluJo SINE Alu -12 300 1 2480 83 0 0 chr3 213505349 213505650 -4531508 - AluY SINE Alu -10 301 1 1903 155 0 7 chr3 213505681 213505972 -4531186 + AluJo SINE Alu 5 293 -19 21 36 0 0 chr3 213506006 213506034 -4531124 + AT_rich Low_complexity Low_complexity 1 28 0 2103 129 7 0 chr3 213508251 213508545 -4528613 + AluSx SINE Alu 3 298 -14 21 0 0 0 chr3 213508927 213508948 -4528210 + AT_rich Low_complexity Low_complexity 1 21 0 840 153 8 0 chr3 213508948 213509072 -4528086 - FLAM_C SINE Alu -18 125 1 559 170 28 19 chr3 213509150 213509256 -4527902 - MLT1K LTR MaLR -1 587 481 56 79 0 0 chr3 213509514 213509640 -4527518 + AT_rich Low_complexity Low_complexity 1 126 0 227 204 0 0 chr3 213509644 213509688 -4527470 + MLT1D LTR MaLR 77 120 -385 687 231 68 26 chr3 213509703 213509937 -4527221 + MER2 DNA MER2_type 94 337 -8 2067 148 7 0 chr3 213510200 213510510 -4526648 - AluSx SINE Alu 0 312 1 1842 124 15 11 chr3 213510601 213510775 -4526383 - AluSx SINE Alu -1 311 134 2168 127 7 0 chr3 213510775 213511075 -4526083 - AluSx SINE Alu -10 302 1 1842 124 15 11 chr3 213511075 213511173 -4525985 - AluSx SINE Alu -178 134 38 2366 106 47 33 chr3 213511494 213511853 -4525305 - THE1B LTR MaLR 0 364 1 11935 84 12 8 chr3 213511853 213513005 -4524153 - THE1B-int LTR MaLR 0 1580 419 2391 83 0 13 chr3 213513005 213513307 -4523851 + AluY SINE Alu 1 298 -13 11935 84 12 8 chr3 213513307 213513728 -4523430 - THE1B-int LTR MaLR -1161 419 1 1247 114 15 40 chr3 213513728 213513930 -4523228 - THE1B LTR MaLR 0 364 168 228 174 65 0 chr3 213513954 213514000 -4523158 - AluSx SINE Alu -253 49 1 337 159 0 43 chr3 213514037 213514106 -4523052 - L1MB8 LINE L1 -2 6176 6111 1317 102 0 0 chr3 213514156 213514342 -4522816 - AluSc SINE Alu -15 294 109 1135 58 128 0 chr3 213514412 213514568 -4522590 - THE1B LTR MaLR -188 176 1 240 274 24 12 chr3 213514576 213514660 -4522498 - L1MC4 LINE L1 -194 7848 7764 2164 109 0 0 chr3 213515506 213515799 -4521359 - AluSx SINE Alu -19 293 1 896 152 33 7 chr3 213516355 213516506 -4520652 - AluJo SINE Alu -11 291 137 322 174 29 0 chr3 213516546 213516615 -4520543 - L1MB7 LINE L1 -1 6183 6113 353 195 35 23 chr3 213516643 213516730 -4520428 - L1MB8 LINE L1 -53 6125 6038 408 20 0 0 chr3 213516756 213516805 -4520353 + (CA)n Simple_repeat Simple_repeat 2 50 0 954 136 11 17 chr3 213516805 213516976 -4520182 + AluJb SINE Alu 133 302 -10 2221 183 171 55 chr3 213516985 213517587 -4519571 - L1MB7 LINE L1 -142 6042 5371 * 2428 190 60 130 chr3 213517581 213517931 -4519227 + L1MD3 LINE L1 4828 5201 -945 1938 157 0 0 chr3 213517931 213518243 -4518915 + AluJb SINE Alu 1 312 0 2428 190 60 130 chr3 213518243 213518410 -4518748 + L1MD3 LINE L1 5201 5378 -768 7616 31 3 72 chr3 213518410 213519445 -4517713 + SVA Other Other 424 1386 0 2428 190 60 130 chr3 213519445 213519472 -4517686 + L1MD3 LINE L1 5378 4446 -1700 1210 21 0 0 chr3 213519472 213519612 -4517546 + L1PA2 LINE L1 6016 6155 0 2428 190 60 130 chr3 213519612 213520507 -4516651 + L1MD3 LINE L1 4445 5401 -745 827 127 0 45 chr3 213520515 213520649 -4516509 - AluJo SINE Alu -175 137 10 1796 109 29 74 chr3 213520845 213521021 -4516137 - AluSx SINE Alu -14 298 116 2384 70 3 0 chr3 213521021 213521322 -4515836 - AluY SINE Alu -9 302 1 2234 91 0 3 chr3 213521322 213521618 -4515540 - AluSq SINE Alu -8 305 11 1796 109 29 74 chr3 213521618 213521752 -4515406 - AluSx SINE Alu -194 118 1 1817 136 0 33 chr3 213521951 213522253 -4514905 + AluJb SINE Alu 3 294 -18 501 108 312 0 chr3 213522258 213522351 -4514807 + AluSg SINE Alu 2 123 -187 28907 128 24 15 chr3 213522441 213522806 -4514352 - HUERS-P3 LTR ERV1 -3811 5108 4748 2141 101 3 16 chr3 213522806 213523114 -4514044 - AluSg SINE Alu 0 310 7 28907 128 24 15 chr3 213523114 213523548 -4513610 - HUERS-P3 LTR ERV1 -4171 4748 4320 2060 78 60 0 chr3 213523548 213523830 -4513328 + AluSc SINE Alu 1 299 -10 28907 128 24 15 chr3 213523830 213524672 -4512486 - HUERS-P3 LTR ERV1 -4599 4320 3487 2084 131 0 0 chr3 213524672 213524978 -4512180 + AluSx SINE Alu 6 311 -1 28907 128 24 15 chr3 213524978 213526199 -4510959 - HUERS-P3 LTR ERV1 -5432 3487 2279 3814 186 48 62 chr3 213526199 213527167 -4509991 - LTR13 LTR ERVK 0 954 1 28907 128 24 15 chr3 213527167 213528620 -4508538 - HUERS-P3 LTR ERV1 -6640 2279 749 3356 191 25 13 chr3 213528654 213529281 -4507877 - HUERS-P3 LTR ERV1 -8284 635 1 232 241 37 0 chr3 213529282 213529336 -4507822 - LTR9 LTR ERV1 0 612 557 1817 114 0 18 chr3 213529347 213529464 -4507694 + AluSx SINE Alu 31 149 -163 2188 181 81 76 chr3 213529464 213530105 -4507053 - LTR9B LTR ERV1 0 644 1 1817 114 0 18 chr3 213530105 213530260 -4506898 + AluSx SINE Alu 149 298 -14 1045 186 159 121 chr3 213530358 213530772 -4506386 - MER21B LTR ERV1 -429 434 5 1864 150 0 19 chr3 213530798 213531112 -4506046 - AluSx SINE Alu -1 311 4 279 271 74 82 chr3 213531208 213531330 -4505828 + L2 LINE L2 3180 3300 -13 210 394 56 6 chr3 213531444 213531604 -4505554 + L2 LINE L2 2867 3034 -238 38 0 0 0 chr3 213531805 213531843 -4505315 + AT_rich Low_complexity Low_complexity 1 38 0 312 256 11 44 chr3 213531843 213531933 -4505225 - L1MC4 LINE L1 -1342 6700 6614 301 297 25 51 chr3 213531863 213531949 -4505209 + L1MC4 LINE L1 6612 6696 -1346 * 1791 129 8 0 chr3 213531949 213532213 -4504945 - AluJo SINE Alu -46 266 1 301 297 25 51 chr3 213532213 213532244 -4504914 + L1MC4 LINE L1 6696 6726 -1316 214 149 21 21 chr3 213532669 213532716 -4504442 + T-rich Low_complexity Low_complexity 2 48 0 2129 80 7 0 chr3 213532893 213533180 -4503978 + AluSc SINE Alu 1 289 -20 448 318 162 64 chr3 213533286 213534052 -4503106 - L2 LINE L2 -50 3222 2391 2366 83 0 0 chr3 213534283 213534583 -4502575 - AluSc SINE Alu -9 300 1 1817 151 7 7 chr3 213534586 213534885 -4502273 - AluJo SINE Alu -13 299 1 2385 68 16 0 chr3 213535124 213535431 -4501727 + AluSx SINE Alu 1 312 0 236 324 72 9 chr3 213537513 213537624 -4499534 + MIR SINE MIR 71 188 -74 1393 176 72 18 chr3 213537666 213537945 -4499213 + AluJb SINE Alu 3 296 -16 21 36 0 0 chr3 213538540 213538568 -4498590 + AT_rich Low_complexity Low_complexity 1 28 0 2237 61 0 48 chr3 213538568 213538878 -4498280 + AluY SINE Alu 1 295 -16 2304 57 0 0 chr3 213589039 213589348 -4447810 + AluY SINE Alu 1 309 0 1629 172 97 22 chr3 213589360 213589680 -4447478 + MLT1D LTR MaLR 162 505 0 2219 105 3 0 chr3 213589837 213590142 -4447016 + AluSq SINE Alu 1 306 -7 1915 123 0 32 chr3 213590157 213590466 -4446692 + AluJb SINE Alu 1 299 -13 320 314 109 7 chr3 213590683 213590820 -4446338 + L1MEc LINE L1 791 941 -5455 1913 131 0 0 chr3 213590820 213591125 -4446033 + AluSx SINE Alu 1 305 0 321 313 0 0 chr3 213591211 213591326 -4445832 + L1MEc LINE L1 975 1089 -5126 1132 149 0 0 chr3 213591334 213591509 -4445649 + AluSg/x SINE Alu 121 295 -17 388 296 56 39 chr3 213591509 213591665 -4445493 + L1MEc LINE L1 1109 1272 -4933 1977 154 64 5 chr3 213591665 213592041 -4445117 + L1MC3 LINE L1 6705 7102 -683 289 261 0 65 chr3 213592046 213592138 -4445020 + MLT1F1 LTR MaLR 45 130 -437 5165 70 36 0 chr3 213592139 213592806 -4444352 + LTR8 LTR ERV1 1 691 0 413 157 0 14 chr3 213592807 213592877 -4444281 - AluS SINE Alu -242 70 2 2502 30 7 0 chr3 213593214 213593516 -4443642 + AluY SINE Alu 1 304 -7 1800 130 0 42 chr3 213593736 213594044 -4443114 + AluSg SINE Alu 1 295 -15 2349 78 3 3 chr3 213594137 213594444 -4442714 + AluSx SINE Alu 1 307 -5 591 181 9 0 chr3 213594496 213594601 -4442557 + U6 snRNA snRNA 1 106 -1 371 303 49 0 chr3 213594749 213594871 -4442287 - L2 LINE L2 0 3272 3145 2393 229 89 41 chr3 213594900 213594998 -4442160 + L1ME3 LINE L1 5078 5170 -992 1950 113 0 11 chr3 213594998 213595368 -4441790 + AluSc SINE Alu 3 369 0 2393 229 89 41 chr3 213595368 213596013 -4441145 + L1ME3 LINE L1 5170 5892 -270 1607 149 7 7 chr3 213596013 213596288 -4440870 + AluJb SINE Alu 1 275 -37 2393 229 89 41 chr3 213596288 213596542 -4440616 + L1ME3 LINE L1 5892 6132 -30 2266 88 7 0 chr3 213596542 213596847 -4440311 + AluSp SINE Alu 1 307 -6 242 269 149 37 chr3 213596895 213597029 -4440129 - L2 LINE L2 -181 3091 2943 2109 108 17 0 chr3 213597092 213597389 -4439769 + AluSx SINE Alu 1 302 -10 209 232 0 29 chr3 213598033 213598102 -4439056 + MIR SINE MIR 60 126 -136 3263 148 137 21 chr3 213598282 213598902 -4438256 - MER50 LTR ERV1 -23 711 20 1477 107 18 0 chr3 213598940 213599165 -4437993 + AluSp SINE Alu 85 313 0 402 289 66 8 chr3 213599187 213599308 -4437850 + L2 LINE L2 3145 3272 0 2195 110 3 0 chr3 213599776 213600086 -4437072 + AluSp SINE Alu 1 311 -2 503 88 0 0 chr3 213601289 213601357 -4435801 + MER41B LTR ERV1 568 635 0 372 79 342 0 chr3 213601357 213601433 -4435725 + MER41B-int LTR ERV1 1 102 -7654 416 169 24 24 chr3 213601443 213601526 -4435632 + MER41B-int LTR ERV1 1 83 -7673 1419 128 24 0 chr3 213601528 213601739 -4435419 + MER41B-int LTR ERV1 5729 5944 -2 1397 106 24 0 chr3 213601739 213601946 -4435212 + MER41B LTR ERV1 1 212 -423 243 83 0 0 chr3 213602380 213602416 -4434742 + MER41B LTR ERV1 177 212 -423 1844 167 25 11 chr3 213602416 213602782 -4434376 + MER41B LTR ERV1 177 547 -88 765 279 89 13 chr3 213602795 213603032 -4434126 - MLT1J LTR MaLR -256 255 1 251 354 61 0 chr3 213603032 213603114 -4434044 - L2 LINE L2 -64 3208 3122 1883 140 0 25 chr3 213603246 213603561 -4433597 + AluJb SINE Alu 1 307 -5 231 316 21 21 chr3 213603777 213603872 -4433286 - L2 LINE L2 -251 3062 2968 238 296 57 23 chr3 213603986 213604074 -4433084 + L2 LINE L2 3175 3265 -48 1757 186 0 0 chr3 213604150 213604457 -4432701 - AluJb SINE Alu -5 307 1 2219 96 0 13 chr3 213604648 213604961 -4432197 - AluSx SINE Alu -2 310 2 306 242 47 84 chr3 213604972 213605162 -4431996 - L1ME4a LINE L1 -3 6118 5936 1881 156 7 0 chr3 213605174 213605476 -4431682 - AluSx SINE Alu -8 304 1 746 183 8 0 chr3 213605757 213605888 -4431270 - FLAM_C SINE Alu -11 132 1 841 204 81 5 chr3 213605888 213605996 -4431162 - L1MA9 LINE L1 -38 6274 6176 387 0 0 0 chr3 213605996 213606039 -4431119 + (TG)n Simple_repeat Simple_repeat 1 43 0 841 204 81 5 chr3 213606039 213606141 -4431017 - L1MA9 LINE L1 -136 6176 6048 2201 74 0 10 chr3 213606618 213606916 -4430242 + AluY SINE Alu 1 295 -16 1767 153 0 3 chr3 213607044 213607331 -4429827 + AluJo SINE Alu 2 287 -25 23 54 0 0 chr3 213607332 213607369 -4429789 + AT_rich Low_complexity Low_complexity 1 37 0 763 220 129 0 chr3 213607417 213607603 -4429555 - MIR SINE MIR -10 252 43 1802 137 7 3 chr3 213608107 213608399 -4428759 - AluSx SINE Alu -3 309 17 974 156 0 0 chr3 213608706 213608866 -4428292 - AluSg/x SINE Alu -5 307 148 938 90 14 21 chr3 213608976 213609121 -4428037 - AluSg/x SINE Alu -20 290 147 774 229 125 11 chr3 213609130 213609410 -4427748 - L1M4 LINE L1 -985 5161 4850 1986 125 3 0 chr3 213609413 213609700 -4427458 + AluSx SINE Alu 1 288 -24 2044 106 0 42 chr3 213609729 213610040 -4427118 + AluSx SINE Alu 1 298 -14 1965 115 30 0 chr3 213610163 213610467 -4426691 - AluSp SINE Alu 0 313 1 281 26 26 0 chr3 213610488 213610526 -4426632 + (TTCC)n Simple_repeat Simple_repeat 1 39 0 503 261 18 12 chr3 213610578 213610743 -4426415 + AluSp SINE Alu 3 168 -145 1156 148 5 16 chr3 213611162 213611351 -4425807 + AluSp SINE Alu 111 297 -16 2023 146 0 0 chr3 213611461 213611769 -4425389 + AluSx SINE Alu 3 310 -2 234 0 0 0 chr3 213611774 213611800 -4425358 + (GA)n Simple_repeat Simple_repeat 1 26 0 2039 125 0 3 chr3 213612317 213612621 -4424537 + AluSx SINE Alu 1 303 -9 1075 232 64 6 chr3 213612623 213612932 -4424226 - MER33 DNA MER1_type -2 322 1 2316 72 0 7 chr3 213613755 213614060 -4423098 + AluY SINE Alu 1 303 -8 412 280 64 32 chr3 213614952 213615109 -4422049 + LTR67 LTR ERVL 2 163 -394 651 237 8 0 chr3 213615260 213615391 -4421767 - FLAM_A SINE Alu -1 132 1 1948 151 0 0 chr3 213615666 213615978 -4421180 - AluSx SINE Alu 0 312 1 1360 202 21 3 chr3 213615980 213616267 -4420891 - AluJo SINE Alu -19 293 2 302 0 26 0 chr3 213616275 213616313 -4420845 + (TATTG)n Simple_repeat Simple_repeat 2 40 0 410 173 0 13 chr3 213616313 213616383 -4420775 - AluJo SINE Alu -27 285 217 1297 171 5 0 chr3 213616424 213616634 -4420524 - AluJo SINE Alu -91 221 11 325 116 0 0 chr3 213616745 213616799 -4420359 - AluJ/FLAM SINE Alu -203 99 50 1091 286 70 7 chr3 213616859 213617317 -4419841 - L1M4 LINE L1 -2461 3685 3199 843 194 73 12 chr3 213617322 213617487 -4419671 + FAM SINE Alu 1 49 0 311 196 73 68 chr3 213617503 213617723 -4419435 - L1M4 LINE L1 -2947 3199 2979 968 177 6 0 chr3 213618015 213618190 -4418968 + AluJb SINE Alu 134 309 -3 704 236 90 45 chr3 213618296 213618652 -4418506 - L1MC5 LINE L1 -44 7917 7546 205 54 54 27 chr3 213618917 213618954 -4418204 + C-rich Low_complexity Low_complexity 5 42 0 1422 95 9 9 chr3 213619692 213619903 -4417255 + AluSx SINE Alu 45 255 -57 5087 140 46 1 chr3 213620126 213620960 -4416198 - Tigger1 DNA MER2_type -52 2366 1496 913 178 122 23 chr3 213620960 213621174 -4415984 - AluJo SINE Alu -51 261 27 7153 193 37 34 chr3 213621191 213622008 -4415150 - Tigger1 DNA MER2_type -940 1478 654 2131 99 30 3 chr3 213622008 213622310 -4414848 - AluSx SINE Alu -2 310 1 7153 193 37 34 chr3 213622310 213622902 -4414256 - Tigger1 DNA MER2_type -1764 654 65 1007 80 0 29 chr3 213623017 213623154 -4414004 + FLAM_C SINE Alu 1 133 0 1679 129 11 22 chr3 213623232 213623510 -4413648 - AluJb SINE Alu -23 289 15 1319 171 33 30 chr3 213623914 213624094 -4413064 - AluJb SINE Alu -2 310 127 1666 114 15 15 chr3 213624094 213624358 -4412800 - AluSx SINE Alu -4 308 45 1319 171 33 30 chr3 213624358 213624482 -4412676 - AluJb SINE Alu -185 127 5 253 311 117 6 chr3 213624634 213624814 -4412344 - L2 LINE L2 -1627 1687 1488 226 367 0 0 chr3 213625450 213625529 -4411629 + C-rich Low_complexity Low_complexity 2 80 0 209 208 0 0 chr3 213627227 213627275 -4409883 + (TA)n Simple_repeat Simple_repeat 1 48 0 2176 102 3 10 chr3 213628327 213628641 -4408517 + AluSx SINE Alu 1 312 0 311 314 179 0 chr3 213628772 213628912 -4408246 - MIR SINE MIR -56 206 42 1254 70 0 0 chr3 213629242 213629398 -4407760 - AluSc SINE Alu -150 159 4 2060 109 10 3 chr3 213629567 213629860 -4407298 + AluSx SINE Alu 1 295 -17 284 265 163 41 chr3 213630339 213630486 -4406672 + MIR3 SINE MIR 17 181 -27 22 0 0 0 chr3 213630996 213631018 -4406140 + AT_rich Low_complexity Low_complexity 1 22 0 2364 66 0 3 chr3 213631139 213631442 -4405716 + AluY SINE Alu 1 302 -9 342 194 43 21 chr3 213631463 213631556 -4405602 + L1MB8 LINE L1 5737 5831 -347 2163 115 3 0 chr3 213631556 213631860 -4405298 + AluSp SINE Alu 1 305 -8 772 154 0 8 chr3 213631863 213631986 -4405172 - AluJo/FLAM SINE Alu -189 123 2 810 162 0 0 chr3 213632868 213633004 -4404154 - FLAM_C SINE Alu -2 141 6 21 0 0 0 chr3 213633009 213633030 -4404128 + AT_rich Low_complexity Low_complexity 1 21 0 238 271 51 0 chr3 213633176 213633235 -4403923 - L2 LINE L2 -5 3308 3247 1116 180 43 112 chr3 213633260 213633582 -4403576 - AluJo SINE Alu -2 310 11 2139 97 7 3 chr3 213633598 213633898 -4403260 - AluSc SINE Alu -8 301 1 967 124 0 0 chr3 213634400 213634537 -4402621 + AluSq/x SINE Alu 1 137 -176 2241 92 3 9 chr3 213634538 213634853 -4402305 + AluSp SINE Alu 1 313 0 965 171 55 0 chr3 213635283 213635464 -4401694 + MER20 DNA MER1_type 29 219 0 2215 101 0 0 chr3 213635908 213636205 -4400953 + AluSx SINE Alu 1 297 -15 1436 124 0 13 chr3 213636478 213636711 -4400447 - AluJb SINE Alu -7 305 76 568 131 19 37 chr3 213636768 213636875 -4400283 + FRAM SINE Alu 69 173 -3 23 0 0 0 chr3 213636903 213636926 -4400232 + AT_rich Low_complexity Low_complexity 1 23 0 1262 163 17 4 chr3 213636926 213637159 -4399999 - AluJo SINE Alu -76 236 1 225 197 66 49 chr3 213637207 213637268 -4399890 - MIR SINE MIR -133 129 68 227 91 0 23 chr3 213637280 213637324 -4399834 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1703 135 11 7 chr3 213637327 213637608 -4399550 - AluJo SINE Alu -30 282 1 397 186 194 0 chr3 213637627 213637751 -4399407 - L1M4 LINE L1 -2445 3701 3554 880 162 0 0 chr3 213637769 213637911 -4399247 - FRAM SINE Alu -42 134 1 532 243 63 45 chr3 213637915 213638137 -4399021 - L1M4 LINE L1 -2616 3530 3305 1967 143 10 0 chr3 213638281 213638589 -4398569 + AluSx SINE Alu 1 311 -1 2651 134 42 28 chr3 213638591 213639089 -4398069 + L1MB7 LINE L1 5679 6183 -1 969 78 16 0 chr3 213639097 213639226 -4397932 + AluY SINE Alu 1 131 -180 2086 118 0 0 chr3 213639228 213639525 -4397633 + AluSx SINE Alu 1 297 -15 504 368 64 10 chr3 213639903 213640150 -4397008 + MIR SINE MIR 1 257 -5 2120 98 7 10 chr3 213640504 213640809 -4396349 - AluSg SINE Alu -2 308 5 1360 198 26 26 chr3 213640929 213641237 -4395921 - AluJo SINE Alu -4 308 1 2168 68 0 4 chr3 213641353 213641652 -4395506 - AluSc SINE Alu 0 298 1 425 305 32 42 chr3 213641744 213641934 -4395224 + L2 LINE L2 2304 2491 -823 23 33 0 0 chr3 213641964 213641994 -4395164 + AT_rich Low_complexity Low_complexity 1 30 0 780 126 0 8 chr3 213641994 213642113 -4395045 - FLAM_C SINE Alu -15 118 1 215 346 154 0 chr3 213642512 213642648 -4394510 + L2 LINE L2 3107 3263 -9 2171 93 0 17 chr3 213642751 213643090 -4394068 - AluSg SINE Alu 0 334 1 467 110 27 0 chr3 213643366 213643439 -4393719 + BC200 scRNA scRNA 3 77 -123 2219 90 0 3 chr3 213643463 213643763 -4393395 - AluSq SINE Alu -14 299 1 439 208 13 27 chr3 213644991 213645140 -4392018 + CT-rich Low_complexity Low_complexity 1 147 0 1449 127 3 92 chr3 213645140 213645456 -4391702 - AluJb SINE Alu -5 307 20 220 350 7 29 chr3 213646772 213646909 -4390249 + L2 LINE L2 3137 3270 -2 495 223 82 0 chr3 213646975 213647095 -4390063 - MIR SINE MIR -63 145 71 295 206 63 0 chr3 213648094 213648157 -4389001 + LTR35 LTR ERV1 1 67 -551 1775 74 35 12 chr3 213648424 213648680 -4388478 + AluSx SINE Alu 6 267 -45 255 289 150 15 chr3 213648994 213649122 -4388036 + L1ME4a LINE L1 5815 5924 -197 2114 96 10 19 chr3 213649122 213649435 -4387723 + AluSx SINE Alu 1 310 -2 255 289 150 15 chr3 213649435 213649572 -4387586 + L1ME4a LINE L1 5924 6116 -5 313 284 134 30 chr3 213649881 213650015 -4387143 + L2 LINE L2 3165 3312 -1 * 478 270 46 35 chr3 213650014 213650188 -4386970 - MIR SINE MIR -86 176 1 250 300 71 7 chr3 213650488 213650628 -4386530 + MER103 DNA DNA 3 151 -15 2131 108 3 0 chr3 213650630 213650926 -4386232 - AluSx SINE Alu -15 297 1 366 206 43 11 chr3 213650926 213651018 -4386140 - L1MB8 LINE L1 -347 5831 5737 2162 54 4 4 chr3 213651039 213651316 -4385842 - AluY SINE Alu -9 302 26 1963 81 44 14 chr3 213651815 213652111 -4385047 - AluSx SINE Alu -7 305 1 270 0 0 0 chr3 213653074 213653104 -4384054 + (CA)n Simple_repeat Simple_repeat 2 31 0 288 0 0 0 chr3 213653173 213653205 -4383953 + (CA)n Simple_repeat Simple_repeat 2 33 0 257 0 30 0 chr3 213653274 213653307 -4383851 + (CA)n Simple_repeat Simple_repeat 2 35 0 347 0 23 0 chr3 213653377 213653420 -4383738 + (CA)n Simple_repeat Simple_repeat 2 45 0 483 0 45 0 chr3 213653486 213653553 -4383605 + (CA)n Simple_repeat Simple_repeat 2 71 0 398 0 65 0 chr3 213653622 213653684 -4383474 + (CA)n Simple_repeat Simple_repeat 2 67 0 252 0 0 0 chr3 213653983 213654011 -4383147 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 286 229 180 16 chr3 213654062 213654184 -4382974 - L2 LINE L2 -939 2375 2234 25 31 0 0 chr3 213654197 213654229 -4382929 + AT_rich Low_complexity Low_complexity 1 32 0 677 214 0 0 chr3 213654570 213654687 -4382471 + AluJo/FLAM SINE Alu 2 118 -194 1393 142 173 16 chr3 213654687 213654941 -4382217 - AluSg SINE Alu -6 294 1 231 200 0 0 chr3 213654995 213655045 -4382113 - L1ME4a LINE L1 -12 6109 6060 427 139 13 25 chr3 213655057 213655136 -4382022 - AluSp/q SINE Alu -21 292 215 338 0 24 0 chr3 213656019 213656061 -4381097 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 2375 72 0 3 chr3 213657770 213658075 -4379083 + AluSq SINE Alu 2 305 -8 1038 93 75 0 chr3 213658075 213658236 -4378922 + AluSg/x SINE Alu 137 309 -3 335 283 88 44 chr3 213658312 213658471 -4378687 - L2 LINE L2 -35 3278 3113 2179 103 0 0 chr3 213658493 213658795 -4378363 - AluSx SINE Alu -10 302 1 535 278 220 22 chr3 213658865 213659279 -4377879 + L2 LINE L2 2164 2659 -655 220 309 152 34 chr3 213659317 213659495 -4377663 + L2 LINE L2 2836 3034 -238 2056 103 0 29 chr3 213659523 213659835 -4377323 + AluSq SINE Alu 1 303 -10 391 257 162 11 chr3 213659839 213660018 -4377140 - L2 LINE L2 -1277 2037 1832 2267 62 3 10 chr3 213660369 213660673 -4376485 - AluY SINE Alu -7 304 3 1748 150 10 19 chr3 213660675 213660915 -4376243 - AluSx SINE Alu -2 310 72 5105 72 38 0 chr3 213660915 213661581 -4375577 + LTR8 LTR ERV1 1 691 0 1748 150 10 19 chr3 213661581 213661653 -4375505 - AluSx SINE Alu -240 72 1 2502 30 7 0 chr3 213661989 213662291 -4374867 + AluY SINE Alu 1 304 -7 1800 130 0 42 chr3 213662511 213662819 -4374339 + AluSg SINE Alu 1 295 -15 2349 78 3 3 chr3 213662912 213663219 -4373939 + AluSx SINE Alu 1 307 -5 591 181 9 0 chr3 213663271 213663376 -4373782 + U6 snRNA snRNA 1 106 -1 371 303 49 0 chr3 213663524 213663646 -4373512 - L2 LINE L2 0 3272 3145 2343 226 93 44 chr3 213663675 213663773 -4373385 + L1ME3 LINE L1 5078 5170 -992 1950 113 0 11 chr3 213663773 213664143 -4373015 + AluSc SINE Alu 3 369 0 2343 226 93 44 chr3 213664143 213664787 -4372371 + L1ME3 LINE L1 5170 5893 -269 1639 149 7 7 chr3 213664787 213665062 -4372096 + AluJb SINE Alu 1 275 -37 2343 226 93 44 chr3 213665062 213665315 -4371843 + L1ME3 LINE L1 5893 6132 -30 2289 91 7 0 chr3 213665315 213665622 -4371536 + AluSp SINE Alu 1 309 -4 270 232 45 39 chr3 213665622 213665662 -4371496 + L1MA10 LINE L1 6293 6331 -3 211 269 149 37 chr3 213665668 213665802 -4371356 - L2 LINE L2 -181 3091 2943 2137 108 17 0 chr3 213665865 213666162 -4370996 + AluSx SINE Alu 1 302 -10 207 232 0 29 chr3 213666806 213666875 -4370283 + MIR SINE MIR 60 126 -136 3240 145 137 21 chr3 213667055 213667675 -4369483 - MER50 LTR ERV1 -23 711 20 1516 103 18 0 chr3 213667713 213667937 -4369221 + AluSp SINE Alu 85 312 -1 367 289 66 8 chr3 213667959 213668080 -4369078 + L2 LINE L2 3145 3272 0 2221 110 3 0 chr3 213668548 213668858 -4368300 + AluSp SINE Alu 1 311 -2 224 112 0 119 chr3 213669494 213669628 -4367530 + (TCCCC)n Simple_repeat Simple_repeat 2 119 0 430 243 5 58 chr3 213669667 213669856 -4367302 + C-rich Low_complexity Low_complexity 1 179 0 310 207 0 121 chr3 213669878 213670204 -4366954 + C-rich Low_complexity Low_complexity 1 286 0 2197 105 0 0 chr3 213670231 213670527 -4366631 + AluSx SINE Alu 1 296 -16 347 119 0 0 chr3 213670553 213670612 -4366546 + Alu SINE Alu 244 302 0 2165 102 3 0 chr3 213670912 213671205 -4365953 - AluSx SINE Alu -18 294 1 835 162 34 7 chr3 213671230 213671378 -4365780 - L1PA16 LINE L1 -9 6157 6006 1214 171 61 0 chr3 213671430 213671668 -4365490 + MER44D DNA MER2_type 2 524 -85 254 250 0 0 chr3 213671668 213671720 -4365438 + Tigger5 DNA MER2_type 1 52 -2271 464 147 0 84 chr3 213671778 213671837 -4365321 - Tigger5 DNA MER2_type -2235 88 38 1894 154 17 0 chr3 213671837 213672136 -4365022 + AluJo SINE Alu 1 304 -8 464 147 0 84 chr3 213672136 213672171 -4364987 - Tigger5 DNA MER2_type -2285 38 2 490 215 57 12 chr3 213672183 213672355 -4364803 + Tigger7 DNA MER2_type 2237 2587 0 306 271 12 24 chr3 213672357 213672442 -4364716 - L1MC4 LINE L1 -1340 6702 6619 25 0 0 0 chr3 213672460 213672485 -4364673 + AT_rich Low_complexity Low_complexity 1 25 0 377 215 11 0 chr3 213672487 213672580 -4364578 + CT-rich Low_complexity Low_complexity 3 96 0 929 114 0 0 chr3 213672580 213672712 -4364446 - AluSg/x SINE Alu -39 271 140 1888 101 58 4 chr3 213672718 213672996 -4364162 - AluY SINE Alu -18 293 1 704 197 8 8 chr3 213673061 213673183 -4363975 + AluJo/FLAM SINE Alu 1 125 -177 2283 81 3 0 chr3 213673183 213673479 -4363679 - AluSq SINE Alu -16 297 1 271 0 25 25 chr3 213673496 213673536 -4363622 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 195 42 0 0 chr3 213673676 213673700 -4363458 + (TA)n Simple_repeat Simple_repeat 2 25 0 1890 126 3 14 chr3 213673700 213673994 -4363164 - AluSq SINE Alu -22 291 1 1532 221 51 3 chr3 213674108 213674546 -4362612 - L1ME1 LINE L1 -2 6176 5725 907 138 44 0 chr3 213674553 213674712 -4362446 - L1MB4 LINE L1 0 6180 6015 584 225 17 0 chr3 213674712 213674832 -4362326 + FLAM_A SINE Alu 2 123 -10 2086 74 0 0 chr3 213674853 213675111 -4362047 + AluSx SINE Alu 40 297 -15 2528 203 55 30 chr3 213675127 213675744 -4361414 - L1ME1 LINE L1 -1311 4835 4196 2299 85 0 0 chr3 213675744 213676038 -4361120 - AluSg SINE Alu -16 294 1 2528 203 55 30 chr3 213676038 213676150 -4361008 - L1ME1 LINE L1 -1950 4196 4088 292 330 21 0 chr3 213677196 213677293 -4359865 + MIR SINE MIR 46 144 -118 263 85 128 0 chr3 213677521 213677568 -4359590 - MIR3 SINE MIR -43 165 113 237 33 0 0 chr3 213677638 213677668 -4359490 + (CA)n Simple_repeat Simple_repeat 2 31 0 2305 57 0 0 chr3 213677783 213678105 -4359053 + AluSx SINE Alu 1 322 0 923 164 68 11 chr3 213678158 213678335 -4358823 - MER5A DNA MER1_type -2 187 1 2148 129 3 0 chr3 213678558 213678867 -4358291 + AluSg SINE Alu 1 310 0 262 203 13 13 chr3 213679067 213679146 -4358012 + CT-rich Low_complexity Low_complexity 3 81 0 257 321 122 30 chr3 213680513 213680644 -4356514 - MIR SINE MIR -70 192 50 1771 166 7 0 chr3 213680655 213680951 -4356207 - AluJo SINE Alu -14 298 1 1349 199 34 96 chr3 213680985 213681065 -4356093 + MLT1B LTR MaLR 1 84 -306 2266 70 10 7 chr3 213681065 213681363 -4355795 - AluSx SINE Alu -13 299 1 1349 199 34 96 chr3 213681363 213681401 -4355757 + MLT1B LTR MaLR 84 123 -267 831 181 0 0 chr3 213681401 213681534 -4355624 + FLAM_C SINE Alu 1 133 0 1349 199 34 96 chr3 213681534 213681830 -4355328 + MLT1B LTR MaLR 123 390 0 1571 203 72 3 chr3 213681890 213682225 -4354933 + MSTA LTR MaLR 3 360 -68 1965 119 10 7 chr3 213682225 213682520 -4354638 - AluSg SINE Alu -14 296 1 1943 127 16 7 chr3 213682773 213683081 -4354077 + AluSx SINE Alu 1 311 -1 2098 129 0 0 chr3 213683081 213683384 -4353774 + AluSg SINE Alu 1 303 -7 2302 84 3 0 chr3 213683594 213683890 -4353268 - AluSx SINE Alu -15 297 1 949 171 55 0 chr3 213684334 213684515 -4352643 - MER20 DNA MER1_type 0 219 29 2357 82 0 9 chr3 213684945 213685261 -4351897 - AluSq SINE Alu 0 313 1 403 214 14 28 chr3 213686489 213686634 -4350524 + CT-rich Low_complexity Low_complexity 1 143 0 1492 131 3 91 chr3 213686634 213686954 -4350204 - AluJb SINE Alu -1 311 20 226 372 0 22 chr3 213688270 213688407 -4348751 + L2 LINE L2 3137 3270 -2 475 223 82 0 chr3 213688473 213688593 -4348565 - MIR SINE MIR -63 145 71 292 206 63 0 chr3 213689592 213689655 -4347503 + LTR35 LTR ERV1 1 67 -551 1871 74 31 8 chr3 213689922 213690178 -4346980 + AluSx SINE Alu 6 267 -45 567 201 86 14 chr3 213690358 213690497 -4346661 + LTR35 LTR ERV1 470 618 0 1018 82 15 0 chr3 213690568 213690702 -4346456 + AluSq/x SINE Alu 1 136 -176 2015 118 0 20 chr3 213690702 213691007 -4346151 + AluSx SINE Alu 1 299 -13 816 166 7 0 chr3 213691018 213691163 -4345995 - L1MB5 LINE L1 -169 6005 5860 903 210 0 6 chr3 213691165 213691332 -4345826 - FRAM SINE Alu 0 166 1 3483 107 100 0 chr3 213691356 213691897 -4345261 - LTR61 LTR ERV1 0 595 1 1935 96 11 7 chr3 213691938 213692247 -4344911 + AluSq SINE Alu 13 322 0 1987 115 7 0 chr3 213692255 213692541 -4344617 - AluSx SINE Alu -3 309 22 274 109 55 0 chr3 213693737 213693792 -4343366 + CT-rich Low_complexity Low_complexity 1 58 0 2149 108 0 16 chr3 213693805 213694296 -4342862 - AluSg SINE Alu 0 310 1 197 338 27 27 chr3 213695301 213695375 -4341783 - MIR SINE MIR -105 157 84 200 247 6 108 chr3 213695834 213695992 -4341166 + G-rich Low_complexity Low_complexity 2 143 0 1458 100 29 21 chr3 213696008 213696248 -4340910 + AluJb SINE Alu 1 242 -70 216 0 0 0 chr3 213696250 213696274 -4340884 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 279 84 7 133 chr3 213696419 213696562 -4340596 + (CGGGG)n Simple_repeat Simple_repeat 5 129 0 817 127 8 8 chr3 213697305 213697439 -4339719 + AluY SINE Alu 178 311 0 1769 144 0 18 chr3 213697467 213697752 -4339406 + AluJo SINE Alu 12 291 -21 2143 116 3 0 chr3 213697758 213698060 -4339098 + AluSg SINE Alu 1 303 -7 2094 100 38 0 chr3 213698607 213698898 -4338260 - AluSc SINE Alu -7 302 1 1363 240 0 7 chr3 213699163 213699467 -4337691 + AluJo SINE Alu 1 302 -10 288 185 19 0 chr3 213699617 213699671 -4337487 + Alu SINE Alu 1 55 -247 2192 113 0 0 chr3 213699983 213700283 -4336875 + AluSg SINE Alu 1 300 -10 263 333 93 0 chr3 213700291 213700420 -4336738 - MIR SINE MIR -67 195 55 2166 101 27 0 chr3 213700741 213701037 -4336121 + AluSx SINE Alu 1 304 -8 393 122 171 0 chr3 213701039 213701121 -4336037 - L1MC3 LINE L1 -12 7773 7678 763 226 7 0 chr3 213701142 213701288 -4335870 - AluJb SINE Alu -28 284 138 3133 143 155 102 chr3 213701291 213701749 -4335409 - L1MC3 LINE L1 -98 7687 7255 5247 73 36 0 chr3 213701749 213702416 -4334742 - LTR8 LTR ERV1 0 691 1 300 261 0 65 chr3 213702417 213702509 -4334649 - MLT1F1 LTR MaLR -437 130 45 3133 143 155 102 chr3 213702509 213702890 -4334268 - L1MC3 LINE L1 -529 7256 6705 390 317 51 14 chr3 213702890 213703046 -4334112 - L1MDa LINE L1 -4933 1272 1109 1155 149 0 0 chr3 213703046 213703221 -4333937 - AluSg/x SINE Alu -17 295 121 316 313 19 6 chr3 213703221 213703393 -4333765 - L1MDa LINE L1 -5116 1102 924 1939 131 0 0 chr3 213703430 213703735 -4333423 - AluSx SINE Alu 0 305 1 335 358 102 0 chr3 213703735 213703872 -4333286 - L1MDa LINE L1 -5455 941 791 1894 129 0 32 chr3 213704089 213704398 -4332760 - AluJb SINE Alu -13 299 1 2252 109 3 0 chr3 213704407 213704718 -4332440 - AluSq SINE Alu -1 312 1 1561 181 94 19 chr3 213704875 213705195 -4331963 - MLT1D LTR MaLR 0 505 162 2334 53 0 0 chr3 213705207 213705516 -4331642 - AluY SINE Alu 0 309 1 1935 141 0 19 chr3 213705646 213705783 -4331375 + AluSx SINE Alu 2 140 -172 2323 92 3 0 chr3 213705783 213706089 -4331069 + AluSq SINE Alu 1 307 -6 1935 141 0 19 chr3 213706089 213706263 -4330895 + AluSx SINE Alu 140 307 -5 1977 132 3 0 chr3 213706570 213706865 -4330293 + AluSx SINE Alu 17 312 0 704 220 129 0 chr3 213707366 213707552 -4329606 + MIR SINE MIR 43 252 -10 353 324 46 23 chr3 213707563 213707615 -4329543 - L1ME4a LINE L1 -176 5945 5896 2262 107 0 0 chr3 213707615 213707925 -4329233 - AluSx SINE Alu -2 310 1 353 324 46 23 chr3 213707925 213707976 -4329182 - L1ME4a LINE L1 -225 5896 5848 1681 97 53 8 chr3 213707976 213708223 -4328935 - AluY SINE Alu -20 291 34 963 201 0 6 chr3 213708227 213708396 -4328762 - FAM SINE Alu -3 172 5 353 324 46 23 chr3 213708396 213708459 -4328699 - L1ME4a LINE L1 -275 5846 5769 342 218 13 73 chr3 213708445 213708580 -4328578 - L1MB8 LINE L1 -334 5787 5706 * 23 54 0 0 chr3 213709495 213709532 -4327626 + AT_rich Low_complexity Low_complexity 1 37 0 2090 83 0 0 chr3 213709707 213709972 -4327186 + AluSq SINE Alu 1 265 -48 2115 114 3 22 chr3 213710126 213710442 -4326716 + AluSx SINE Alu 1 310 -2 220 366 71 0 chr3 213710461 213710573 -4326585 + MIR3 SINE MIR 51 170 -38 389 274 37 15 chr3 213710581 213710716 -4326442 - MER5B DNA MER1_type -16 162 25 2086 115 16 0 chr3 213710794 213711098 -4326060 - AluSp SINE Alu -4 309 1 274 109 55 0 chr3 213711826 213711881 -4325277 + CT-rich Low_complexity Low_complexity 1 58 0 2149 108 0 16 chr3 213711894 213712385 -4324773 - AluSg SINE Alu 0 310 1 197 338 27 27 chr3 213713390 213713464 -4323694 - MIR SINE MIR -105 157 84 200 247 6 108 chr3 213713923 213714081 -4323077 + G-rich Low_complexity Low_complexity 2 143 0 1458 100 29 21 chr3 213714097 213714337 -4322821 + AluJb SINE Alu 1 242 -70 216 0 0 0 chr3 213714339 213714363 -4322795 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 342 65 0 160 chr3 213714508 213714677 -4322481 + (CGGGG)n Simple_repeat Simple_repeat 3 144 0 211 194 14 42 chr3 213714689 213714761 -4322397 + G-rich Low_complexity Low_complexity 3 72 0 857 110 8 0 chr3 213715498 213715625 -4321533 + AluY SINE Alu 184 311 0 2004 142 0 14 chr3 213715642 213715937 -4321221 + AluJo SINE Alu 1 291 -21 2229 130 0 0 chr3 213715943 213716243 -4320915 + AluSx SINE Alu 1 300 -12 2136 116 10 16 chr3 213716331 213716641 -4320517 + AluSx SINE Alu 1 308 -4 1747 213 66 13 chr3 213716645 213717101 -4320057 - L1ME1 LINE L1 -5 6161 5682 333 350 7 7 chr3 213717663 213717803 -4319355 + CT-rich Low_complexity Low_complexity 4 143 0 210 312 59 59 chr3 213718044 213718214 -4318944 - MIR3 SINE MIR -22 186 17 2644 48 0 0 chr3 213718491 213718800 -4318358 - AluY SINE Alu -2 309 1 193 287 52 35 chr3 213719144 213719259 -4317899 + MIR3 SINE MIR 3 119 -89 1901 112 35 0 chr3 213719346 213719604 -4317554 + AluSx SINE Alu 1 267 -45 484 105 12 12 chr3 213719604 213719690 -4317468 + (GAA)n Simple_repeat Simple_repeat 3 88 0 833 168 0 0 chr3 213719888 213720019 -4317139 + FLAM_C SINE Alu 5 135 -8 221 206 55 14 chr3 213720789 213720862 -4316296 + L2 LINE L2 1945 2020 -1294 2419 81 0 0 chr3 213720878 213721185 -4315973 - AluSx SINE Alu -5 307 1 489 229 74 16 chr3 213721850 213721972 -4315186 - L2 LINE L2 0 3272 3144 2406 82 0 0 chr3 213722015 213722306 -4314852 + AluSx SINE Alu 1 291 -21 375 245 144 0 chr3 213722310 213722449 -4314709 - LTR16C LTR ERVL -59 432 274 1085 238 70 14 chr3 213722451 213722737 -4314421 + MER5C DNA MER1_type 5 306 -18 268 120 60 0 chr3 213722744 213722794 -4314364 - LTR16C LTR ERVL -210 281 229 1987 157 0 3 chr3 213723389 213723689 -4313469 + AluJo SINE Alu 1 299 -13 347 182 13 0 chr3 213724010 213724087 -4313071 + CT-rich Low_complexity Low_complexity 1 78 0 2360 121 0 0 chr3 213724087 213724394 -4312764 - AluSg SINE Alu -3 307 1 263 276 49 49 chr3 213724527 213724770 -4312388 - L1ME4a LINE L1 -216 5905 5663 893 216 12 0 chr3 213724783 213724954 -4312204 - FRAM SINE Alu -10 166 1 1942 138 27 10 chr3 213724962 213725259 -4311899 - AluSx SINE Alu -6 306 5 609 235 27 11 chr3 213725264 213725451 -4311707 - L1MC5 LINE L1 -464 7497 7308 2135 116 0 7 chr3 213725598 213725882 -4311276 + AluJb SINE Alu 1 282 -30 225 94 0 0 chr3 213725882 213725914 -4311244 + (TAGG)n Simple_repeat Simple_repeat 2 33 0 300 295 116 9 chr3 213725922 213726034 -4311124 - L1MEc LINE L1 -4846 1550 1427 1156 141 5 4 chr3 213726069 213726281 -4310877 - AluSq SINE Alu -9 304 1 2120 121 7 10 chr3 213726349 213726654 -4310504 + AluSx SINE Alu 1 304 -8 339 176 143 33 chr3 213726656 213726747 -4310411 - L1MC3 LINE L1 -11 7774 7674 734 176 0 8 chr3 213727547 213727678 -4309480 - AluJb SINE Alu -181 131 2 22 35 0 0 chr3 213727793 213727822 -4309336 + AT_rich Low_complexity Low_complexity 1 29 0 307 289 70 45 chr3 213728151 213728307 -4308851 - L2 LINE L2 0 3313 3154 2205 99 14 3 chr3 213728420 213728739 -4308419 + AluSx SINE Alu 1 322 0 277 277 42 42 chr3 213728811 213728977 -4308181 - HAL1b LINE L1 -1085 263 98 1449 115 67 0 chr3 213728984 213729192 -4307966 - AluJb SINE Alu -4 308 87 2216 118 3 3 chr3 213729375 213729681 -4307477 + AluSx SINE Alu 1 306 -6 1979 147 7 3 chr3 213729683 213729990 -4307168 + AluSx SINE Alu 1 308 -4 2018 123 3 38 chr3 213729999 213730315 -4306843 + AluSp SINE Alu 1 305 -8 862 129 8 0 chr3 213730319 213730443 -4306715 - AluSq/x SINE Alu -188 125 1 249 208 65 39 chr3 213730565 213730642 -4306516 - L1MC4 LINE L1 -1179 6863 6785 218 169 0 70 chr3 213730783 213730854 -4306304 + GA-rich Low_complexity Low_complexity 2 67 0 240 230 127 0 chr3 213732753 213732846 -4304312 + MIR SINE MIR 43 154 -93 2158 97 28 7 chr3 213732846 213733135 -4304023 + AluSx SINE Alu 1 295 -17 189 0 0 0 chr3 213733155 213733176 -4303982 + (TAA)n Simple_repeat Simple_repeat 2 22 0 2153 140 0 0 chr3 213734712 213735012 -4302146 - AluSx SINE Alu -12 300 1 185 286 102 10 chr3 213735601 213735699 -4301459 + MIR SINE MIR 65 171 -91 * 216 291 28 64 chr3 213735697 213735838 -4301320 - MIR3 SINE MIR 0 208 73 306 73 0 0 chr3 213736057 213736098 -4301060 + (CCCTG)n Simple_repeat Simple_repeat 1 41 0 243 301 124 7 chr3 213736368 213736521 -4300637 - MIR SINE MIR -2 260 90 196 271 43 143 chr3 213736635 213736689 -4300469 + MIR SINE MIR 116 174 -88 207 0 0 0 chr3 213736689 213736712 -4300446 + (CA)n Simple_repeat Simple_repeat 2 24 0 196 271 43 143 chr3 213736712 213736797 -4300361 + MIR SINE MIR 174 241 -21 333 350 7 7 chr3 213737269 213737409 -4299749 + CT-rich Low_complexity Low_complexity 4 143 0 210 312 59 59 chr3 213737650 213737820 -4299338 - MIR3 SINE MIR -22 186 17 2644 48 0 0 chr3 213738097 213738406 -4298752 - AluY SINE Alu -2 309 1 193 287 52 35 chr3 213738750 213738865 -4298293 + MIR3 SINE MIR 3 119 -89 2195 124 7 0 chr3 213738952 213739258 -4297900 + AluSx SINE Alu 1 308 -4 3218 213 62 16 chr3 213739262 213739788 -4297370 - L1ME1 LINE L1 -5 6161 5661 2190 127 3 0 chr3 213739788 213740087 -4297071 - AluSx SINE Alu -12 300 1 3218 213 62 16 chr3 213740087 213740909 -4296249 - L1ME1 LINE L1 -505 5661 4087 396 298 8 8 chr3 213741408 213741539 -4295619 + MIR SINE MIR 14 144 -118 287 316 31 36 chr3 213741616 213741637 -4295521 + L2 LINE L2 1630 1650 -1664 2171 95 58 3 chr3 213741637 213741932 -4295226 - AluSx SINE Alu 0 312 2 287 316 31 36 chr3 213741932 213742106 -4295052 + L2 LINE L2 1650 1824 -1490 469 167 62 0 chr3 213742467 213742563 -4294595 - HY1 scRNA scRNA -10 102 1 1979 145 3 16 chr3 213742571 213742875 -4294283 - AluSx SINE Alu -12 300 1 1987 89 50 0 chr3 213743167 213743426 -4293732 - AluY SINE Alu -6 305 34 893 201 0 6 chr3 213743430 213743599 -4293559 - FAM SINE Alu -3 172 5 335 196 20 80 chr3 213743648 213743783 -4293375 - L1M4 LINE L1 -334 5787 5706 23 54 0 0 chr3 213744698 213744735 -4292423 + AT_rich Low_complexity Low_complexity 1 37 0 2219 83 0 0 chr3 213744910 213745175 -4291983 + AluSq SINE Alu 1 265 -48 2247 114 3 22 chr3 213745329 213745645 -4291513 + AluSx SINE Alu 1 310 -2 226 366 71 0 chr3 213745664 213745776 -4291382 + MIR3 SINE MIR 51 170 -38 383 267 38 15 chr3 213745784 213745915 -4291243 - MER5B DNA MER1_type -16 162 29 180 191 24 0 chr3 213745945 213745987 -4291171 + MIR3 SINE MIR 156 198 -10 2115 128 16 3 chr3 213745997 213746302 -4290856 - AluSp SINE Alu -4 309 1 489 229 74 16 chr3 213746327 213746449 -4290709 - L2 LINE L2 0 3272 3144 2297 100 0 0 chr3 213746492 213746783 -4290375 + AluSx SINE Alu 1 291 -21 375 245 144 0 chr3 213746787 213746926 -4290232 - LTR16C LTR ERVL -59 432 274 1085 238 70 14 chr3 213746928 213747214 -4289944 + MER5C DNA MER1_type 5 306 -18 268 120 60 0 chr3 213747221 213747271 -4289887 - LTR16C LTR ERVL -210 281 229 1987 157 0 3 chr3 213747866 213748166 -4288992 + AluJo SINE Alu 1 299 -13 347 182 13 0 chr3 213748487 213748564 -4288594 + CT-rich Low_complexity Low_complexity 1 78 0 2360 121 0 0 chr3 213748564 213748871 -4288287 - AluSg SINE Alu -3 307 1 263 276 49 49 chr3 213749004 213749247 -4287911 - L1ME4a LINE L1 -216 5905 5663 1545 189 6 68 chr3 213749260 213749439 -4287719 - AluJo SINE Alu -10 302 113 1973 139 27 10 chr3 213749439 213749740 -4287418 - AluSx SINE Alu -6 306 1 1980 106 4 0 chr3 213749745 213750010 -4287148 - AluSg SINE Alu -6 304 39 1545 189 6 68 chr3 213750010 213750146 -4287012 - AluJo SINE Alu -203 109 1 1166 99 109 19 chr3 213750544 213750755 -4286403 - MER30 DNA MER1_type 0 230 1 2199 100 30 0 chr3 213750819 213751120 -4286038 + AluSx SINE Alu 1 310 -2 180 236 109 0 chr3 213752580 213752635 -4284523 + MIR3 SINE MIR 94 154 -54 452 258 88 51 chr3 213752635 213752713 -4284445 - MER112 DNA MER1_type 0 260 186 2435 73 10 0 chr3 213752713 213753014 -4284144 - AluSp SINE Alu -9 304 1 452 258 88 51 chr3 213753014 213753152 -4284006 - MER112 DNA MER1_type -74 186 36 213 286 0 0 chr3 213753199 213753255 -4283903 + MIR3 SINE MIR 150 205 -3 1155 129 0 0 chr3 213753421 213753584 -4283574 + AluSg/x SINE Alu 137 299 -11 2069 141 3 0 chr3 213754155 213754468 -4282690 - AluSx SINE Alu 0 312 1 1984 111 54 0 chr3 213756290 213756590 -4280568 - AluSq SINE Alu 0 313 1 652 143 57 69 chr3 213756901 213757076 -4280082 - Charlie4 DNA MER1_type -7 1954 1782 498 178 237 53 chr3 213757058 213757227 -4279931 - Charlie4 DNA MER1_type -1744 217 18 * 238 259 17 0 chr3 213757434 213757492 -4279666 + L2 LINE L2 3208 3266 -6 1668 143 33 4 chr3 213757655 213757899 -4279259 + AluJo SINE Alu 1 251 -61 1108 193 18 18 chr3 213758005 213758228 -4278930 - MER58A DNA MER1_type -1 223 1 1757 153 21 32 chr3 213758731 213758988 -4278170 + MER44D DNA MER2_type 1 260 -2231 1103 185 91 82 chr3 213758988 213759328 -4277830 - MER2 DNA MER2_type -1 343 1 1757 153 21 32 chr3 213759328 213759409 -4277749 + MER44D DNA MER2_type 260 605 -4 2601 68 13 0 chr3 213759513 213759821 -4277337 + AluSp SINE Alu 1 312 -1 2189 122 7 0 chr3 213760340 213760636 -4276522 - AluSq SINE Alu -15 298 1 2072 151 0 3 chr3 213760640 213760944 -4276214 - AluSx SINE Alu -9 303 1 2317 108 0 7 chr3 213761746 213762053 -4275105 - AluSx SINE Alu -7 305 1 2281 121 0 0 chr3 213762404 213762694 -4274464 - AluSq SINE Alu -23 290 1 1053 187 0 0 chr3 213762694 213762860 -4274298 - AluJb SINE Alu -18 294 129 242 200 0 0 chr3 213762866 213762916 -4274242 - L1MC4 LINE L1 -774 7268 7219 2258 122 3 0 chr3 213763016 213763320 -4273838 - AluSx SINE Alu -7 305 1 2143 110 26 74 chr3 213763320 213763515 -4273643 - L1MA7 LINE L1 0 6291 6088 2509 84 0 0 chr3 213763515 213763826 -4273332 - AluY SINE Alu 0 311 1 2143 110 26 74 chr3 213763826 213763886 -4273272 - L1MA7 LINE L1 -203 6088 6027 2405 99 3 0 chr3 213763886 213764188 -4272970 - AluSc SINE Alu -6 303 1 2143 110 26 74 chr3 213764188 213764393 -4272765 - L1MA7 LINE L1 -264 6027 5852 7465 161 132 27 chr3 213765226 213766813 -4270345 + MER52A LTR ERV1 1 1754 -1 1582 172 9 91 chr3 213767020 213767155 -4270003 + AluSx SINE Alu 1 145 -167 2249 112 0 3 chr3 213767155 213767458 -4269700 + AluSg SINE Alu 1 302 -8 1582 172 9 91 chr3 213767458 213767653 -4269505 + AluSx SINE Alu 145 304 -8 806 141 0 129 chr3 213767685 213767848 -4269310 + FRAM SINE Alu 27 168 -8 774 195 12 61 chr3 213767878 213768042 -4269116 + FAM SINE Alu 1 44 -5 912 173 40 0 chr3 213768074 213768224 -4268934 + FAM SINE Alu 1 46 -3 1666 172 22 0 chr3 213768331 213768604 -4268554 + AluJo SINE Alu 12 290 -22 2010 115 39 0 chr3 213769476 213769785 -4267373 + AluSx SINE Alu 1 320 0 1890 193 111 52 chr3 213770430 213770812 -4266346 - MLT1D LTR MaLR 0 505 88 1738 163 0 40 chr3 213770812 213771137 -4266021 - AluSx SINE Alu 0 312 1 1890 193 111 52 chr3 213771137 213771231 -4265927 - MLT1D LTR MaLR -417 88 1 1181 64 0 13 chr3 213771790 213771803 -4265355 - AluSg/x SINE Alu -5 305 293 1864 153 51 25 chr3 213771803 213771910 -4265248 - L1MB7 LINE L1 -9 6175 6072 1930 162 7 10 chr3 213771910 213772212 -4264946 - AluJo SINE Alu -11 301 1 1864 153 51 25 chr3 213772212 213772457 -4264701 - L1MB7 LINE L1 -112 6072 5814 1181 64 0 13 chr3 213772457 213772599 -4264559 - AluSg/x SINE Alu -17 293 152 436 165 10 31 chr3 213772747 213772844 -4264314 - L1MB7 LINE L1 -666 5518 5424 1581 204 10 0 chr3 213772922 213773216 -4263942 + AluSx SINE Alu 1 297 -15 878 168 14 121 chr3 213773218 213773498 -4263660 + L1ME LINE L1 4174 4423 -1723 1991 120 4 0 chr3 213773507 213773783 -4263375 - AluY SINE Alu -14 297 21 426 248 190 18 chr3 213775602 213775828 -4261330 + L1ME LINE L1 5525 5789 -332 1000 132 7 0 chr3 213776015 213776167 -4260991 - AluJb SINE Alu -24 288 136 524 122 49 0 chr3 213776252 213776334 -4260824 - AluJb SINE Alu -143 169 84 1478 186 38 14 chr3 213776338 213776629 -4260529 - AluSg SINE Alu -9 301 4 194 116 23 0 chr3 213776632 213776675 -4260483 + (TA)n Simple_repeat Simple_repeat 1 44 0 664 331 25 11 chr3 213776675 213776953 -4260205 - AluJo SINE Alu -26 286 5 703 171 8 8 chr3 213777168 213777297 -4259861 - L1MB5 LINE L1 -180 5994 5866 1513 105 0 0 chr3 213777298 213777498 -4259660 - AluSp SINE Alu -3 310 111 3404 108 100 0 chr3 213777498 213778037 -4259121 - LTR61 LTR ERV1 -2 593 1 2238 96 18 0 chr3 213778077 213778359 -4258799 + AluSx SINE Alu 13 299 -13 1898 160 0 22 chr3 213778692 213779011 -4258147 + AluJo SINE Alu 1 312 0 1840 163 9 35 chr3 213779025 213779344 -4257814 + AluJb SINE Alu 1 311 -1 487 280 53 0 chr3 213779453 213779603 -4257555 + MIR3 SINE MIR 30 187 -21 525 239 63 45 chr3 213779999 213780221 -4256937 + L1M4 LINE L1 3305 3530 -2616 969 172 49 0 chr3 213780225 213780388 -4256770 + FRAM SINE Alu 1 163 -13 360 198 198 0 chr3 213780388 213780509 -4256649 + L1M4 LINE L1 3557 3701 -2445 1926 133 17 7 chr3 213780528 213780822 -4256336 + AluJo SINE Alu 1 297 -15 878 168 14 121 chr3 213780824 213781104 -4256054 + L1M4 LINE L1 4174 4423 -1723 2079 117 0 0 chr3 213781113 213781394 -4255764 - AluY SINE Alu -14 297 17 2154 131 3 10 chr3 213782987 213783299 -4253859 + AluSx SINE Alu 1 310 -2 2380 82 3 0 chr3 213783325 213783618 -4253540 - AluSg SINE Alu -16 294 1 982 176 6 0 chr3 213784116 213784281 -4252877 - AluSg/x SINE Alu -10 302 137 216 345 24 79 chr3 213784338 213784503 -4252655 - MIR3 SINE MIR -1 207 52 362 156 0 16 chr3 213785107 213785171 -4251987 + MER94 DNA DNA 8 70 -64 1793 184 13 25 chr3 213785178 213785494 -4251664 + AluJo SINE Alu 1 312 0 197 132 55 22 chr3 213785494 213785504 -4251654 + (TA)n Simple_repeat Simple_repeat 1 9 -85 2161 119 0 10 chr3 213785504 213785799 -4251359 + AluSg SINE Alu 1 292 -18 197 132 55 22 chr3 213785799 213785879 -4251279 + (TA)n Simple_repeat Simple_repeat 9 94 0 34 42 0 0 chr3 213785902 213785950 -4251208 + AT_rich Low_complexity Low_complexity 1 48 0 2426 75 3 0 chr3 213786480 213786775 -4250383 - AluSx SINE Alu -16 296 1 27 29 0 0 chr3 213786885 213786919 -4250239 + AT_rich Low_complexity Low_complexity 1 34 0 834 189 0 0 chr3 213786959 213787086 -4250072 - FLAM_C SINE Alu -16 127 1 213 276 58 46 chr3 213787088 213787205 -4249953 - MIR SINE MIR -62 146 28 25 0 0 0 chr3 213787235 213787260 -4249898 + AT_rich Low_complexity Low_complexity 1 25 0 1844 135 37 17 chr3 213787291 213787588 -4249570 + AluSx SINE Alu 1 303 -9 524 122 49 0 chr3 213787592 213787674 -4249484 + AluJb SINE Alu 84 169 -143 1000 132 7 0 chr3 213787759 213787911 -4249247 + AluJb SINE Alu 136 288 -24 426 248 190 18 chr3 213788098 213788324 -4248834 - L1ME LINE L1 -332 5789 5525 1816 149 45 14 chr3 213790395 213790684 -4246474 + AluJb SINE Alu 1 298 -14 2283 104 0 13 chr3 213790773 213791082 -4246076 + AluY SINE Alu 1 305 -6 2186 122 0 3 chr3 213791172 213791475 -4245683 + AluSx SINE Alu 11 312 0 390 305 96 23 chr3 213792634 213792811 -4244347 - MIR SINE MIR -23 239 50 987 75 0 30 chr3 213793300 213793433 -4243725 + FLAM_C SINE Alu 2 130 -3 1990 85 19 4 chr3 213793864 213794123 -4243035 - AluSx SINE Alu -10 302 40 2315 95 7 0 chr3 213794395 213794691 -4242467 + AluSx SINE Alu 1 298 -14 10002 43 2 145 chr3 213794722 213796339 -4240819 - SVA Other Other 0 1386 1 2273 98 0 14 chr3 213796494 213796791 -4240367 - AluSg SINE Alu -17 293 1 613 143 98 9 chr3 213798360 213798472 -4238686 + FLAM_C SINE Alu 3 124 -9 1216 176 62 76 chr3 213798534 213798824 -4238334 - AluSx SINE Alu -26 286 1 1842 167 3 23 chr3 213799127 213799433 -4237725 - AluJo SINE Alu -12 300 1 219 235 0 103 chr3 213800333 213800401 -4236757 - L3 LINE CR1 0 1577 1517 2243 111 0 0 chr3 213802903 213803201 -4233957 + AluSx SINE Alu 1 298 -14 2410 88 7 0 chr3 213805521 213805829 -4231329 - AluSp SINE Alu -3 310 1 853 219 6 0 chr3 213806222 213806382 -4230776 - FRAM SINE Alu -5 161 1 223 362 117 0 chr3 213806915 213807009 -4230149 - MIR SINE MIR -81 127 23 514 196 245 0 chr3 213807873 213808036 -4229122 + L1MB4 LINE L1 5978 6180 0 429 230 251 14 chr3 213808595 213808784 -4228374 + MIR SINE MIR 3 234 -28 1628 229 52 9 chr3 213808916 213809092 -4228066 + MLT1C LTR MaLR 1 168 -299 1999 98 95 0 chr3 213809092 213809366 -4227792 + AluSx SINE Alu 5 304 -8 1628 229 52 9 chr3 213809366 213809630 -4227528 + MLT1C LTR MaLR 168 460 -7 204 40 0 0 chr3 213809995 213810020 -4227138 + (TC)n Simple_repeat Simple_repeat 1 25 0 1380 192 7 45 chr3 213810021 213810196 -4226962 - AluJo SINE Alu -31 281 120 2208 82 20 0 chr3 213810196 213810490 -4226668 + AluSp SINE Alu 1 300 -13 1380 192 7 45 chr3 213810490 213810606 -4226552 - AluJo SINE Alu -192 120 1 458 213 0 0 chr3 213810620 213810700 -4226458 - FLAM SINE Alu -21 122 43 211 128 0 26 chr3 213811602 213811641 -4225517 + (CAG)n Simple_repeat Simple_repeat 2 39 0 2104 148 3 0 chr3 213813066 213813377 -4223781 - AluSx SINE Alu 0 312 1 1886 144 0 18 chr3 213813550 213813835 -4223323 - AluJb SINE Alu -32 280 1 379 268 78 45 chr3 213813936 213814115 -4223043 - MER5A DNA MER1_type -4 185 1 1457 146 189 0 chr3 213814598 213814852 -4222306 + AluSx SINE Alu 1 302 0 324 284 112 9 chr3 213814857 213814973 -4222185 + HAL1b LINE L1 1219 1346 -2 406 143 52 0 chr3 213814973 213815050 -4222108 - MLT1B LTR MaLR -50 340 260 1816 149 45 14 chr3 213815583 213815872 -4221286 + AluJb SINE Alu 1 298 -14 2283 104 0 13 chr3 213815961 213816270 -4220888 + AluY SINE Alu 1 305 -6 2250 131 0 0 chr3 213816349 213816661 -4220497 + AluSx SINE Alu 1 312 0 390 305 96 23 chr3 213817820 213817997 -4219161 - MIR SINE MIR -23 239 50 987 75 0 30 chr3 213818486 213818619 -4218539 + FLAM_C SINE Alu 2 130 -3 2358 93 0 3 chr3 213819050 213819352 -4217806 - AluSx SINE Alu -10 302 2 341 333 58 31 chr3 213819526 213819751 -4217407 + MIR SINE MIR 32 262 0 2291 121 0 0 chr3 213819776 213820082 -4217076 + AluSx SINE Alu 1 306 -6 1596 206 3 0 chr3 213820528 213820859 -4216299 - AluJb SINE Alu 0 351 20 2191 116 3 7 chr3 213820918 213821220 -4215938 + AluSx SINE Alu 1 301 -11 2492 68 3 0 chr3 213821316 213821612 -4215546 + AluY SINE Alu 1 297 -14 2338 68 0 0 chr3 213822162 213822440 -4214718 + AluSg SINE Alu 1 278 -32 306 0 0 0 chr3 213822441 213822475 -4214683 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1486 176 30 36 chr3 213822490 213822832 -4214326 + AluJb SINE Alu 1 340 0 188 326 0 0 chr3 213823569 213823618 -4213540 - MIR3 SINE MIR -49 159 111 2340 77 3 10 chr3 213823818 213824118 -4213040 + AluSq SINE Alu 1 298 -15 2276 119 0 0 chr3 213824361 213824656 -4212502 - AluSx SINE Alu -17 295 1 881 123 31 0 chr3 213825447 213825577 -4211581 - AluJb SINE Alu -15 297 164 489 223 66 0 chr3 213825578 213825699 -4211459 - HAL1b LINE L1 -686 662 534 2214 111 0 32 chr3 213825717 213826032 -4211126 + AluSp SINE Alu 1 305 -8 790 154 0 8 chr3 213826035 213826158 -4211000 - AluJo/FLAM SINE Alu -189 123 2 217 263 0 88 chr3 213826992 213827072 -4210086 + L2 LINE L2 2985 3057 -215 262 189 91 167 chr3 213827299 213827353 -4209805 + MIR SINE MIR 8 65 -197 2375 46 0 11 chr3 213827353 213827637 -4209521 + AluY SINE Alu 1 281 -30 215 91 0 23 chr3 213827640 213827684 -4209474 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 262 189 91 167 chr3 213827684 213827757 -4209401 + MIR SINE MIR 67 129 -133 1370 163 17 4 chr3 213827805 213828038 -4209120 + AluJo SINE Alu 1 236 -76 23 0 0 0 chr3 213828038 213828061 -4209097 + AT_rich Low_complexity Low_complexity 1 23 0 575 131 19 37 chr3 213828089 213828196 -4208962 - FRAM SINE Alu -3 173 69 1238 139 5 15 chr3 213828253 213828455 -4208703 + AluJb SINE Alu 76 275 -37 500 88 15 0 chr3 213828571 213828639 -4208519 - Alu SINE Alu -241 70 2 2299 86 0 10 chr3 213828792 213829093 -4208065 + AluSx SINE Alu 1 298 -14 481 110 27 0 chr3 213829117 213829190 -4207968 - BC200 scRNA scRNA -123 77 3 2319 77 0 17 chr3 213829466 213829763 -4207395 + AluSg SINE Alu 1 292 -18 1486 192 55 14 chr3 213829814 213830106 -4207052 + AluJo SINE Alu 1 304 -8 258 32 0 0 chr3 213830134 213830165 -4206993 + (TA)n Simple_repeat Simple_repeat 2 32 0 208 151 19 0 chr3 213830298 213830351 -4206807 + (CGGGG)n Simple_repeat Simple_repeat 1 54 0 35 130 0 0 chr3 213830360 213830414 -4206744 + GC_rich Low_complexity Low_complexity 1 54 0 5491 101 34 12 chr3 213830529 213832036 -4205122 + L1PA10 LINE L1 4610 6167 -1 594 179 80 0 chr3 213832426 213832538 -4204620 - AluSg/x SINE Alu -72 240 120 704 233 117 12 chr3 213832557 213832806 -4204352 - L1M4 LINE L1 -1022 5124 4850 2371 76 0 3 chr3 213832810 213833098 -4204060 + AluSc SINE Alu 2 288 -21 341 230 151 7 chr3 213833102 213833241 -4203917 - LTR16C LTR ERVL -59 432 274 854 263 57 16 chr3 213833243 213833490 -4203668 + MER5C DNA MER1_type 5 261 -63 6940 86 127 9 chr3 213833661 213834770 -4202388 + L1P LINE L1 2 1241 -4905 9289 54 0 1 chr3 213834959 213836147 -4201011 - L1P LINE L1 -1394 4752 3566 948 205 6 0 chr3 213936263 213936429 -4100729 + AluJb SINE Alu 131 297 -15 2015 159 0 0 chr3 213936638 213936947 -4100211 + AluSx SINE Alu 1 309 -3 339 292 162 62 chr3 213936971 213937075 -4100083 + L1ME4a LINE L1 5718 5810 -311 2055 120 7 10 chr3 213937075 213937376 -4099782 + AluSx SINE Alu 1 300 -12 339 292 162 62 chr3 213937376 213937610 -4099548 + L1ME4a LINE L1 5810 6090 -31 329 293 64 38 chr3 213937867 213938024 -4099134 - MIR SINE MIR -48 214 54 210 342 61 0 chr3 213938182 213938296 -4098862 - L3 LINE CR1 -488 1089 969 * 243 239 125 11 chr3 213938264 213938352 -4098806 - L2 LINE L2 0 3272 3175 2005 122 14 14 chr3 213938404 213938562 -4098596 - AluJb SINE Alu -17 295 135 2389 88 7 0 chr3 213938562 213938857 -4098301 - AluSq SINE Alu -16 297 1 2005 122 14 14 chr3 213938857 213938992 -4098166 - AluJb SINE Alu -176 136 2 205 285 129 32 chr3 213939001 213939198 -4097960 + L2 LINE L2 3014 3221 -51 1307 146 4 31 chr3 213939611 213939746 -4097412 + AluJo SINE Alu 1 130 -182 2146 102 3 3 chr3 213939746 213940076 -4097082 + AluSq SINE Alu 1 330 0 1307 146 4 31 chr3 213940076 213940165 -4096993 + AluJo SINE Alu 130 220 -92 254 159 0 0 chr3 213940165 213940209 -4096949 + FLAM_A SINE Alu 85 128 -5 2113 131 10 0 chr3 213940374 213940665 -4096493 + AluSx SINE Alu 1 294 -18 709 181 9 0 chr3 213940670 213940786 -4096372 - FLAM_C SINE Alu -16 117 1 23 0 0 0 chr3 213940858 213940881 -4096277 + AT_rich Low_complexity Low_complexity 1 23 0 925 129 0 0 chr3 213941371 213941503 -4095655 + FLAM_C SINE Alu 2 133 0 983 248 64 90 chr3 213942159 213942430 -4094728 + L2 LINE L2 2718 2994 -319 2371 83 0 3 chr3 213942430 213942720 -4094438 - AluSq SINE Alu -24 289 1 983 248 64 90 chr3 213942720 213942986 -4094172 + L2 LINE L2 2994 3313 0 1903 234 70 45 chr3 213943530 213944069 -4093089 + MLT1E2 LTR MaLR 1 558 -68 2304 104 3 0 chr3 213944069 213944367 -4092791 - AluSp SINE Alu -10 303 5 1903 234 70 45 chr3 213944367 213944430 -4092728 + MLT1E2 LTR MaLR 558 618 -8 2515 78 10 0 chr3 213944502 213944810 -4092348 - AluY SINE Alu 0 311 1 747 167 24 0 chr3 213945102 213945228 -4091930 + FLAM_A SINE Alu 5 133 0 289 208 0 0 chr3 213945619 213945672 -4091486 - MLT1D LTR MaLR -204 301 249 1554 185 8 0 chr3 213945676 213945941 -4091217 + AluJo SINE Alu 5 271 -41 253 331 57 40 chr3 213946472 213946596 -4090562 - MIR3 SINE MIR -25 183 58 2341 105 0 0 chr3 213947166 213947470 -4089688 + AluSg SINE Alu 6 309 -1 1662 147 3 60 chr3 213947498 213947845 -4089313 + AluJb SINE Alu 1 330 0 2380 99 3 0 chr3 213947847 213948150 -4089008 + AluSp SINE Alu 1 304 -9 265 146 62 0 chr3 213948409 213948457 -4088701 + AluSp/q SINE Alu 241 291 -12 2287 74 3 3 chr3 213948463 213948770 -4088388 + AluSg SINE Alu 1 307 0 608 214 166 7 chr3 213948812 213948957 -4088201 - MER5A DNA MER1_type -6 183 16 798 267 115 61 chr3 213949025 213949404 -4087754 + MLT1L LTR MaLR 123 533 -82 2389 88 3 0 chr3 213949404 213949700 -4087458 - AluSx SINE Alu -15 297 1 798 267 115 61 chr3 213949700 213949781 -4087377 + MLT1L LTR MaLR 533 608 -7 1528 179 50 50 chr3 213949903 213950155 -4087003 - LTR8 LTR ERV1 0 691 441 2568 70 0 0 chr3 213950155 213950456 -4086702 + AluSx SINE Alu 3 303 -9 1528 179 50 50 chr3 213950456 213950822 -4086336 - LTR8 LTR ERV1 -250 441 1 903 186 43 61 chr3 213951085 213951316 -4085842 + AluJo SINE Alu 85 311 -1 371 260 110 0 chr3 213951334 213951480 -4085678 + L1MC3 LINE L1 6110 6271 -1514 272 241 0 0 chr3 213951486 213951565 -4085593 + GA-rich Low_complexity Low_complexity 3 81 0 288 243 0 0 chr3 213951576 213951745 -4085413 + GA-rich Low_complexity Low_complexity 3 171 0 240 229 0 0 chr3 213951756 213951865 -4085293 + GA-rich Low_complexity Low_complexity 3 111 0 405 296 0 0 chr3 213951963 213952132 -4085026 + GA-rich Low_complexity Low_complexity 3 171 0 942 203 80 0 chr3 213952140 213952352 -4084806 + L1MC3 LINE L1 6243 6471 -1314 315 0 0 0 chr3 213952355 213952390 -4084768 + (CA)n Simple_repeat Simple_repeat 2 36 0 399 298 17 11 chr3 213952403 213952581 -4084577 + (TA)n Simple_repeat Simple_repeat 2 180 0 348 165 11 99 chr3 213952601 213952622 -4084536 + L1M4 LINE L1 3152 3173 -2973 2024 157 0 16 chr3 213952622 213952934 -4084224 + AluJb SINE Alu 1 307 -5 348 165 11 99 chr3 213952934 213953003 -4084155 + L1M4 LINE L1 3173 3234 -2912 1304 129 88 68 chr3 213953013 213953133 -4084025 + AluJo SINE Alu 15 131 -181 2195 57 0 54 chr3 213953133 213953453 -4083705 - AluY SINE Alu 0 304 1 1304 129 88 68 chr3 213953453 213953594 -4083564 + AluJo SINE Alu 131 282 -30 635 262 13 107 chr3 213953604 213953654 -4083504 + L1M4 LINE L1 3223 3276 -2870 2199 98 3 10 chr3 213953654 213953950 -4083208 + AluSc SINE Alu 1 294 -15 635 262 13 107 chr3 213953950 213954024 -4083134 + L1M4 LINE L1 3276 3355 -2791 1875 138 3 56 chr3 213954024 213954343 -4082815 + AluJb SINE Alu 1 302 -10 635 262 13 107 chr3 213954343 213954515 -4082643 + L1M4 LINE L1 3355 3492 -2654 722 179 49 0 chr3 213954519 213954642 -4082516 + AluJo SINE Alu 10 138 -174 1129 204 101 10 chr3 213954651 213954841 -4082317 + L1M4 LINE L1 3949 4179 -1967 2170 122 6 3 chr3 213954841 213955152 -4082006 + AluSq SINE Alu 1 312 -1 1129 204 101 10 chr3 213955152 213955269 -4081889 + L1M4 LINE L1 4179 4284 -1862 580 150 35 18 chr3 213955252 213955365 -4081793 + L1MC4a LINE L1 6604 6718 -1090 * 309 143 16 16 chr3 213955618 213955681 -4081477 + L1MC3 LINE L1 6719 6781 -1004 2203 114 7 0 chr3 213955681 213955979 -4081179 - AluSx SINE Alu -12 300 1 662 191 0 0 chr3 213955979 213956094 -4081064 - AluJb SINE Alu -196 116 2 872 194 26 26 chr3 213956294 213956485 -4080673 - AluJb SINE Alu -121 191 1 185 253 36 96 chr3 213956674 213956757 -4080401 - MIR3 SINE MIR -16 192 115 513 162 191 9 chr3 213956784 213956889 -4080269 + AluJb SINE Alu 167 290 -22 1270 113 16 16 chr3 213956981 213957167 -4079991 - AluSg/x SINE Alu 0 312 127 380 292 15 36 chr3 213958716 213958853 -4078305 + L1M4 LINE L1 4960 5093 -1053 2239 90 0 43 chr3 213958925 213959248 -4077910 - AluSg SINE Alu -1 309 1 335 137 0 0 chr3 213959275 213959326 -4077832 - Alu SINE Alu -251 52 2 462 344 72 6 chr3 213959327 213959507 -4077651 + L1M4 LINE L1 5080 5271 -875 340 318 46 7 chr3 213959633 213959784 -4077374 + MIR SINE MIR 97 253 -9 1407 169 107 31 chr3 213960134 213960424 -4076734 - AluJb SINE Alu 0 312 1 2343 100 3 7 chr3 213960551 213960861 -4076297 - AluSq SINE Alu -4 309 1 2408 92 0 0 chr3 213960862 213961155 -4076003 - AluSg SINE Alu -12 298 6 2058 110 53 0 chr3 213961434 213961716 -4075442 + AluSx SINE Alu 1 297 -15 207 0 0 0 chr3 213962699 213962722 -4074436 + (A)n Simple_repeat Simple_repeat 1 23 0 688 215 0 0 chr3 213962731 213962861 -4074297 + FLAM_A SINE Alu 1 130 -3 292 131 0 49 chr3 213963123 213963184 -4073974 + Alu SINE Alu 240 297 -4 1324 136 0 10 chr3 213963289 213963495 -4073663 - AluSg/x SINE Alu -7 305 102 333 203 14 0 chr3 213964444 213964513 -4072645 + MER63 DNA MER1_type 682 751 -310 546 205 161 0 chr3 213964996 213965108 -4072050 - FLAM_C SINE Alu 0 133 4 263 250 0 0 chr3 213965109 213965177 -4071981 - L1M4c LINE L1 -5209 1175 1108 2166 96 16 38 chr3 213965191 213965505 -4071653 - AluSx SINE Alu -5 307 1 2757 242 186 9 chr3 213965506 213966156 -4071002 - L1 LINE L1 -1765 4381 3847 2469 75 7 0 chr3 213966156 213966462 -4070696 + AluSg SINE Alu 1 308 -2 2757 242 186 9 chr3 213966462 213966972 -4070186 - L1 LINE L1 -2299 3847 3016 481 253 51 18 chr3 213967017 213967290 -4069868 + L1M4 LINE L1 2172 2453 -3693 1156 113 0 12 chr3 213967379 213967539 -4069619 + AluSc SINE Alu 5 162 -147 306 185 0 15 chr3 213967673 213967738 -4069420 + AluSp/q SINE Alu 240 303 0 300 125 0 107 chr3 213967998 213968054 -4069104 + Alu SINE Alu 241 284 -18 1951 114 3 16 chr3 213968100 213968408 -4068750 + AluSc SINE Alu 1 304 -5 1966 103 17 3 chr3 213968621 213968913 -4068245 - AluSg SINE Alu -14 296 1 196 274 20 0 chr3 213969134 213969185 -4067973 + MIR SINE MIR 98 149 -113 2026 123 0 0 chr3 213969186 213969479 -4067679 + AluSx SINE Alu 1 293 -19 267 265 24 0 chr3 213971075 213971158 -4066000 + (TCCA)n Simple_repeat Simple_repeat 1 85 0 363 268 12 12 chr3 213971185 213971267 -4065891 - L2 LINE L2 -35 3237 3156 281 317 84 14 chr3 213971466 213971608 -4065550 + L2 LINE L2 3116 3267 -5 1481 203 7 3 chr3 213972333 213972633 -4064525 - AluJo SINE Alu -9 303 3 2287 63 7 0 chr3 213973148 213973432 -4063726 + AluY SINE Alu 2 287 -24 1349 175 122 24 chr3 213973561 213973898 -4063260 - LTR48 LTR ERV1 -417 370 1 368 267 104 68 chr3 213974129 213974350 -4062808 - MLT1H LTR MaLR -225 324 96 2096 87 10 3 chr3 213974757 213975132 -4062026 - L1P4 LINE L1 -628 5540 5164 262 311 28 0 chr3 213975242 213975348 -4061810 - HAL1 LINE L1 -1612 895 787 1908 132 0 4 chr3 213975986 213976266 -4060892 + AluSp SINE Alu 19 297 -16 812 147 133 7 chr3 213976266 213976416 -4060742 + AluSp SINE Alu 137 305 -8 1012 140 37 6 chr3 213977181 213977345 -4059813 - AluSg SINE Alu -141 169 1 2170 110 0 0 chr3 213977426 213977718 -4059440 + AluSg SINE Alu 1 292 -18 536 321 32 11 chr3 213978010 213978200 -4058958 + MIR SINE MIR 16 209 -53 1954 121 3 0 chr3 213978251 213978533 -4058625 + AluSx SINE Alu 1 283 -29 25 0 0 0 chr3 213978534 213978559 -4058599 + AT_rich Low_complexity Low_complexity 1 25 0 821 232 11 0 chr3 213978575 213978765 -4058393 + L1PBa LINE L1 6 197 -6666 * 9039 198 36 26 chr3 213978762 213981038 -4056120 + L1PBa LINE L1 1392 3644 -3218 2404 48 0 0 chr3 213981038 213981331 -4055827 + AluY SINE Alu 1 293 -18 9039 198 36 26 chr3 213981331 213981565 -4055593 + L1PBa LINE L1 3644 3874 -2988 2147 125 0 0 chr3 213981565 213981876 -4055282 + AluSq SINE Alu 1 311 -2 9039 198 36 26 chr3 213981876 213982681 -4054477 + L1PBa LINE L1 3874 4728 -2134 2229 113 0 0 chr3 213982681 213982992 -4054166 + AluSx SINE Alu 1 311 -1 1176 136 5 0 chr3 213983006 213983197 -4053961 + L1PB1 LINE L1 5959 6150 -1 2333 66 10 0 chr3 213983225 213983529 -4053629 + AluSp SINE Alu 1 307 -6 1061 140 6 12 chr3 213983562 213983726 -4053432 + FRAM SINE Alu 4 166 0 216 222 0 0 chr3 213983811 213983856 -4053302 - MIR SINE MIR -43 219 175 1679 115 4 0 chr3 213983894 213984128 -4053030 - AluSg SINE Alu -75 235 1 310 149 95 27 chr3 213984129 213984203 -4052955 - MIR SINE MIR -99 163 85 1208 159 75 0 chr3 213984451 213984665 -4052493 + AluJo SINE Alu 2 231 -81 802 216 61 119 chr3 213984733 213985145 -4052013 + MLT1B LTR MaLR 1 388 -2 2020 119 0 22 chr3 213985244 213985556 -4051602 - AluSx SINE Alu -5 307 3 1071 326 103 7 chr3 213985560 213986103 -4051055 + L3 LINE CR1 614 1208 -369 1547 172 79 53 chr3 213986103 213986609 -4050549 + LTR61 LTR ERV1 1 595 0 736 154 0 0 chr3 213986754 213986864 -4050294 - AluSx SINE Alu -7 302 193 976 137 0 0 chr3 213986865 213987011 -4050147 - AluSx SINE Alu -167 146 1 450 260 70 33 chr3 213987040 213987240 -4049918 + MLT1K LTR MaLR 10 249 -339 353 99 0 161 chr3 213987240 213987285 -4049873 - MSTA LTR MaLR 0 428 400 2241 103 3 0 chr3 213987285 213987596 -4049562 + AluSx SINE Alu 1 312 0 353 99 0 161 chr3 213987596 213987631 -4049527 - MSTA LTR MaLR -28 400 361 387 100 0 76 chr3 213987645 213987904 -4049254 + AluSp SINE Alu 1 303 0 * 2410 112 22 6 chr3 213987893 213988259 -4048899 - MSTA LTR MaLR -56 372 1 802 311 52 17 chr3 213988259 213988574 -4048584 + MLT1K LTR MaLR 242 568 -20 2247 94 0 0 chr3 213988682 213988979 -4048179 - AluSx SINE Alu -15 297 1 606 212 334 3 chr3 213989098 213989503 -4047655 + LTR29 LTR ERV1 1 582 -40 1803 134 7 7 chr3 213989529 213989828 -4047330 - AluJo SINE Alu -13 299 1 353 297 14 29 chr3 213989836 213989974 -4047184 - HAL1 LINE L1 -223 2284 2149 1417 109 5 0 chr3 213989975 213990196 -4046962 - AluY SINE Alu -8 303 82 1126 172 5 20 chr3 213990196 213990399 -4046759 + LTR8A LTR ERV1 98 297 -430 * 1893 191 68 57 chr3 213990390 213990903 -4046255 + LTR8A LTR ERV1 209 727 0 810 190 7 0 chr3 213991263 213991400 -4045758 + FRAM SINE Alu 1 137 -39 412 191 67 38 chr3 213991434 213991539 -4045619 - MLT1E LTR MaLR -485 108 1 778 155 0 0 chr3 213991586 213991702 -4045456 + FLAM_C SINE Alu 1 116 -17 250 311 66 53 chr3 213991797 213991948 -4045210 - L2 LINE L2 -177 3095 2943 2295 89 0 0 chr3 213992673 213992977 -4044181 + AluSx SINE Alu 9 312 0 248 295 89 0 chr3 213993124 213993236 -4043922 + MIR3 SINE MIR 82 203 -5 364 171 24 0 chr3 213994308 213994390 -4042768 + CT-rich Low_complexity Low_complexity 1 84 0 1868 127 0 7 chr3 213994390 213994666 -4042492 - AluSx SINE Alu -32 280 7 235 279 15 15 chr3 213994736 213994804 -4042354 + CT-rich Low_complexity Low_complexity 2 69 0 295 179 123 94 chr3 213994917 213995023 -4042135 + MIR SINE MIR 84 192 -70 256 198 58 58 chr3 213995032 213995118 -4042040 - L2 LINE L2 -1 3271 3186 1455 142 68 39 chr3 213995262 213995543 -4041615 - AluJb SINE Alu -13 289 1 2219 101 0 3 chr3 213995556 213995862 -4041296 - AluSq SINE Alu -6 307 3 2177 110 0 0 chr3 213996434 213996743 -4040415 + AluSx SINE Alu 1 309 -3 1307 180 18 93 chr3 213996819 213997153 -4040005 + AluJb SINE Alu 1 309 -3 427 282 16 78 chr3 213997199 213997454 -4039704 - L2 LINE L2 -56 3257 3019 587 240 69 75 chr3 213997465 213997827 -4039331 - L1MC5 LINE L1 -50 7911 7552 439 211 53 0 chr3 213997840 213997954 -4039204 + FRAM SINE Alu 44 163 -13 276 120 0 0 chr3 213998001 213998051 -4039107 + L1ME4a LINE L1 6060 6109 -12 797 163 0 8 chr3 213998159 213998282 -4038876 + AluJo/FLAM SINE Alu 2 123 -189 1106 139 0 0 chr3 213998284 213998450 -4038708 - AluSq SINE Alu -14 299 134 1773 140 7 0 chr3 213998450 213998743 -4038415 - AluSg SINE Alu -15 295 1 197 295 33 16 chr3 213999124 213999185 -4037973 + MIR SINE MIR 89 150 -112 1996 124 0 7 chr3 213999353 213999652 -4037506 - AluSq SINE Alu -16 297 1 180 196 107 18 chr3 213999729 213999785 -4037373 + L2 LINE L2 2578 2638 -676 841 174 0 0 chr3 213999785 213999929 -4037229 + FRAM SINE Alu 18 161 -15 449 223 182 34 chr3 214000495 214000643 -4036515 + MER5A DNA MER1_type 9 178 -11 2147 95 0 0 chr3 214000664 214000947 -4036211 + AluSq SINE Alu 1 283 -30 202 0 29 57 chr3 214000959 214000994 -4036164 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 730 199 7 15 chr3 214001016 214001152 -4036006 - FRAM SINE Alu -25 151 17 2190 91 17 0 chr3 214001196 214001493 -4035665 + AluSg SINE Alu 1 302 -8 794 153 0 36 chr3 214001603 214001740 -4035418 + AluJo/FLAM SINE Alu 2 133 -169 1457 175 74 3 chr3 214001742 214002027 -4035131 + AluJo SINE Alu 1 305 -7 526 220 0 10 chr3 214002205 214002305 -4034853 - FLAM_A SINE Alu -43 99 1 839 116 0 90 chr3 214002595 214002750 -4034408 + FLAM_C SINE Alu 2 142 -1 436 364 43 11 chr3 214002776 214002960 -4034198 + MIR SINE MIR 63 252 -10 771 188 0 0 chr3 214003503 214003636 -4033522 + FLAM_C SINE Alu 1 133 0 1001 143 21 80 chr3 214003693 214003930 -4033228 - AluJb SINE Alu 0 312 90 2097 93 10 0 chr3 214004141 214004431 -4032727 + AluSg SINE Alu 1 293 -17 1170 118 11 0 chr3 214004431 214004609 -4032549 + AluSp SINE Alu 134 313 0 523 261 39 120 chr3 214004832 214005116 -4032042 + MIR SINE MIR 2 262 0 180 420 22 29 chr3 214005362 214005500 -4031658 + L3 LINE CR1 930 1066 -511 1993 86 62 3 chr3 214005517 214005807 -4031351 + AluSq SINE Alu 1 307 -6 227 301 80 0 chr3 214005824 214005937 -4031221 + L3 LINE CR1 1137 1258 -319 824 119 0 32 chr3 214005955 214006081 -4031077 + FLAM_C SINE Alu 5 126 -17 269 309 86 63 chr3 214006100 214006147 -4031011 + L3 LINE CR1 1326 1370 -207 2051 113 14 0 chr3 214006147 214006440 -4030718 - AluSx SINE Alu -15 297 1 269 309 86 63 chr3 214006440 214006567 -4030591 + L3 LINE CR1 1370 1504 -73 232 235 0 0 chr3 214006574 214006625 -4030533 - L2 LINE L2 -4 3309 3259 2074 122 0 0 chr3 214006790 214007108 -4030050 + AluSx SINE Alu 1 318 0 825 83 8 8 chr3 214007626 214007746 -4029412 + FLAM_C SINE Alu 1 120 -23 21 57 0 0 chr3 214007746 214007781 -4029377 + AT_rich Low_complexity Low_complexity 1 35 0 2129 96 7 3 chr3 214007790 214008081 -4029077 + AluSg SINE Alu 3 294 -16 201 94 0 0 chr3 214008132 214008164 -4028994 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 392 257 162 7 chr3 214008340 214008488 -4028670 - MER112 DNA MER1_type 0 260 90 256 356 0 0 chr3 214008502 214008589 -4028569 + (CA)n Simple_repeat Simple_repeat 2 88 0 1274 160 122 8 chr3 214008773 214009035 -4028123 - AluSx SINE Alu -19 293 2 1288 190 119 4 chr3 214009044 214009329 -4027829 - AluJb SINE Alu 0 315 2 550 152 0 0 chr3 214009337 214009429 -4027729 - AluJ/FRAM SINE Alu -5 307 216 476 157 12 0 chr3 214009447 214009530 -4027628 - AluJ/FRAM SINE Alu -11 301 218 1574 139 14 28 chr3 214009551 214009870 -4027288 - AluJo SINE Alu 0 315 1 2024 81 0 0 chr3 214010088 214010359 -4026799 + AluSg SINE Alu 1 271 -39 206 325 36 12 chr3 214010533 214010616 -4026542 - MIR SINE MIR -111 151 67 1944 135 7 0 chr3 214010653 214010949 -4026209 - AluSx SINE Alu -14 298 1 1307 125 0 36 chr3 214011422 214011646 -4025512 - AluSg/x SINE Alu -19 293 78 2351 96 0 0 chr3 214012057 214012370 -4024788 - AluSq SINE Alu 0 313 1 1533 162 20 26 chr3 214012502 214012804 -4024354 - AluJb SINE Alu -12 300 1 1041 242 180 21 chr3 214013076 214013638 -4023520 + L1ME3A LINE L1 2180 2804 -3411 1771 162 162 8 chr3 214013638 214014009 -4023149 + MSTA LTR MaLR 1 428 0 1041 242 180 21 chr3 214014009 214014033 -4023125 + L1ME3A LINE L1 2804 2823 -3392 1877 68 11 8 chr3 214014160 214014424 -4022734 - AluSq SINE Alu -48 265 1 808 160 15 0 chr3 214014752 214014883 -4022275 - FLAM_A SINE Alu 0 133 1 317 310 35 9 chr3 214014887 214015003 -4022155 + L1ME3A LINE L1 3423 3541 -2674 1975 128 26 0 chr3 214015110 214015414 -4021744 - AluSx SINE Alu 0 312 1 1910 132 0 3 chr3 214015676 214015963 -4021195 + AluSq SINE Alu 2 287 -26 798 188 133 4 chr3 214015968 214016202 -4020956 + L1ME3A LINE L1 3652 3915 -2300 * 854 221 25 20 chr3 214016182 214016460 -4020698 + L1ME3A LINE L1 5666 5941 -298 438 242 32 16 chr3 214016516 214016640 -4020518 + L1M4c LINE L1 296 421 -6225 580 152 83 83 chr3 214016677 214016822 -4020336 + L1M4c LINE L1 491 635 -6011 2661 208 38 78 chr3 214016829 214017336 -4019822 + L1M4c LINE L1 859 1385 -5261 1828 164 3 10 chr3 214017336 214017641 -4019517 + AluJb SINE Alu 5 307 -5 2661 208 38 78 chr3 214017641 214017724 -4019434 + L1M4c LINE L1 1385 1470 -5176 1169 210 71 50 chr3 214017724 214018005 -4019153 + AluJo SINE Alu 4 290 -12 2661 208 38 78 chr3 214018005 214018939 -4018219 + L1M4c LINE L1 1470 2410 -4236 1922 121 4 0 chr3 214018939 214019265 -4017893 + AluSx SINE Alu 1 327 0 2661 208 38 78 chr3 214019265 214019551 -4017607 + L1M4c LINE L1 2410 2706 -3940 26 30 0 0 chr3 214019827 214019860 -4017298 + AT_rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chr3 214020035 214020060 -4017098 + AT_rich Low_complexity Low_complexity 1 25 0 1711 133 7 4 chr3 214020229 214020500 -4016658 + AluSx SINE Alu 15 286 -26 881 209 74 36 chr3 214020538 214021019 -4016139 + L1M4c LINE L1 2143 2649 -3733 939 203 20 36 chr3 214021046 214021179 -4015979 + L1M4c LINE L1 2970 3104 -3278 2229 95 7 0 chr3 214021179 214021473 -4015685 - AluSg SINE Alu -14 296 1 939 203 20 36 chr3 214021473 214021644 -4015514 + L1M4c LINE L1 3104 3269 -3113 2227 78 3 3 chr3 214021714 214022010 -4015148 - AluY SINE Alu -12 299 4 350 278 74 0 chr3 214022035 214022143 -4015015 + MIR SINE MIR 146 261 -1 777 165 16 0 chr3 214022162 214022289 -4014869 - FLAM_C SINE Alu -2 131 3 394 186 81 93 chr3 214022351 214022512 -4014646 + LTR16A LTR ERVL 223 381 -69 1805 143 4 4 chr3 214022548 214022828 -4014330 - AluSq SINE Alu -33 280 1 276 222 56 0 chr3 214022828 214022900 -4014258 + LTR16A LTR ERVL 369 444 -6 515 190 0 65 chr3 214023092 214023276 -4013882 + AluY SINE Alu 2 173 -138 7728 72 4 13 chr3 214023787 214024785 -4012373 - LTR13 LTR ERVK 0 1007 19 1877 125 0 11 chr3 214024785 214025065 -4012093 + AluSx SINE Alu 11 287 -25 299 267 157 32 chr3 214025096 214025313 -4011845 + L1ME LINE L1 5296 5539 -625 231 285 91 36 chr3 214025432 214025597 -4011561 + L1ME LINE L1 5650 5823 -347 228 196 0 0 chr3 214025720 214025771 -4011387 + Alu SINE Alu 248 298 -4 207 114 0 0 chr3 214027558 214027593 -4009565 + (GAA)n Simple_repeat Simple_repeat 3 37 0 294 29 0 0 chr3 214028374 214028409 -4008749 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 233 213 0 0 chr3 214029690 214029737 -4007421 + MLT2D LTR ERVL 249 295 -119 229 200 55 0 chr3 214030010 214030065 -4007093 + MLT2D LTR ERVL 229 286 -128 225 162 0 0 chr3 214030074 214030111 -4007047 + MLT2D LTR ERVL 250 286 -128 320 268 55 15 chr3 214035890 214036113 -4001045 + L2 LINE L2 2740 2974 -339 183 362 49 45 chr3 214036121 214036345 -4000813 + L2 LINE L2 2849 3073 -199 272 148 93 0 chr3 214036439 214036493 -4000665 + MADE1 DNA Mariner 1 59 -21 197 343 29 39 chr3 214036566 214036668 -4000490 + L2 LINE L2 3155 3255 -58 671 152 16 0 chr3 214037474 214037599 -3999559 + CT-rich Low_complexity Low_complexity 3 129 0 1719 161 27 0 chr3 214037601 214037893 -3999265 - AluJb SINE Alu -12 300 1 1255 93 0 0 chr3 214037924 214038096 -3999062 - AluSg/x SINE Alu -5 305 134 548 184 28 18 chr3 214038097 214038206 -3998952 + MLT1C LTR MaLR 358 467 0 985 275 33 44 chr3 214040084 214040604 -3996554 + L1ME LINE L1 507 1016 -5067 625 276 61 16 chr3 214040809 214041120 -3996038 + L1ME LINE L1 2176 2500 -3580 4005 266 66 45 chr3 214041124 214043150 -3994008 + L1ME LINE L1 2956 5024 -1056 446 280 0 2 chr3 214043300 214043437 -3993721 - MLT1B LTR MaLR -5 500 250 209 234 47 18 chr3 214044430 214044601 -3992557 + (GTGTG)n Simple_repeat Simple_repeat 3 178 0 630 317 119 11 chr3 214044991 214045370 -3991788 - HAL1 LINE L1 -1833 674 255 340 306 120 27 chr3 214045409 214045592 -3991566 - HAL1 LINE L1 -2153 354 155 242 210 48 0 chr3 214045775 214045837 -3991321 + MLT1L LTR MaLR 14 78 -537 374 306 39 33 chr3 214046142 214046322 -3990836 + MLT1K LTR MaLR 399 579 -9 713 217 115 9 chr3 214046778 214046995 -3990163 - L1ME1 LINE L1 -8 6158 5919 1127 171 120 35 chr3 214046995 214047253 -3989905 + AluJb SINE Alu 1 280 -32 705 24 0 0 chr3 214047253 214047336 -3989822 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 836 257 68 7 chr3 214047336 214047628 -3989530 - L1ME1 LINE L1 -235 5931 5622 6962 59 12 2 chr3 214047703 214048991 -3988167 + L1PA7 LINE L1 4854 6150 -4 195 321 114 15 chr3 214050079 214050210 -3986948 + MIR SINE MIR 36 179 -83 3936 170 60 63 chr3 214051366 214052244 -3984914 + L1MC2 LINE L1 4791 5668 -717 7637 70 14 19 chr3 214052244 214053256 -3983902 + LTR13 LTR ERVK 1 1007 0 3936 170 60 63 chr3 214053256 214053780 -3983378 + L1MC2 LINE L1 5668 6192 -193 190 270 27 40 chr3 214054465 214054539 -3982619 + MIR3 SINE MIR 84 156 -52 33 0 0 0 chr3 214054629 214054662 -3982496 + AT_rich Low_complexity Low_complexity 1 33 0 447 229 0 0 chr3 214055428 214055546 -3981612 + (CA)n Simple_repeat Simple_repeat 2 119 0 240 270 59 59 chr3 214058425 214058577 -3978581 + HAL1 LINE L1 751 902 -1605 342 115 0 0 chr3 214058696 214058748 -3978410 + (TA)n Simple_repeat Simple_repeat 2 53 0 1206 129 241 0 chr3 214058748 214058972 -3978186 - AluSx SINE Alu -18 294 17 2124 104 0 28 chr3 214059210 214059528 -3977630 + AluSg SINE Alu 1 309 -1 1110 143 0 0 chr3 214059528 214059703 -3977455 + AluSg/x SINE Alu 134 308 -4 11528 149 23 38 chr3 214059703 214059759 -3977399 + L1MA3 LINE L1 3034 3089 -3216 2199 109 0 3 chr3 214059759 214060072 -3977086 + AluSx SINE Alu 1 312 0 11528 149 23 38 chr3 214060072 214062045 -3975113 + L1MA3 LINE L1 3089 5089 -1216 216 0 0 0 chr3 214062045 214062069 -3975089 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 11528 149 23 38 chr3 214062069 214062133 -3975025 + L1MA3 LINE L1 5089 5152 -1153 1873 119 0 0 chr3 214062133 214062394 -3974764 - AluSx SINE Alu -29 283 23 11528 149 23 38 chr3 214062394 214063144 -3974014 + L1MA3 LINE L1 5152 5826 -479 2140 88 3 3 chr3 214063144 214063452 -3973706 + AluSq SINE Alu 1 308 0 11528 149 23 38 chr3 214063452 214063821 -3973337 + L1MA3 LINE L1 5826 6199 -106 1669 144 26 23 chr3 214063842 214064148 -3973010 + AluJo SINE Alu 6 312 0 709 234 75 20 chr3 214064152 214064404 -3972754 - L1M4 LINE L1 -2042 4104 3839 1785 155 3 3 chr3 214064453 214064744 -3972414 + AluJb SINE Alu 1 291 -21 21 0 0 0 chr3 214064755 214064776 -3972382 + AT_rich Low_complexity Low_complexity 1 21 0 2318 73 3 0 chr3 214064780 214065082 -3972076 + AluSg SINE Alu 1 303 -7 1608 200 43 5 chr3 214065128 214065478 -3971680 - L1MB7 LINE L1 0 6164 5811 2039 140 19 0 chr3 214065484 214065805 -3971353 - L1MB4 LINE L1 -2 6178 5852 1383 50 6 0 chr3 214065823 214066002 -3971156 + AluY SINE Alu 119 298 -13 189 121 0 0 chr3 214066138 214066171 -3970987 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 1715 143 0 14 chr3 214066177 214066470 -3970688 - AluJb SINE Alu -23 289 1 899 209 19 39 chr3 214066471 214066729 -3970429 - L1 LINE L1 -1496 4650 4398 601 172 0 0 chr3 214066932 214067031 -3970127 - FLAM_C SINE Alu -40 103 5 215 292 88 9 chr3 214067049 214067162 -3969996 - L3 LINE CR1 -319 1258 1137 2214 75 10 7 chr3 214067179 214067485 -3969673 - AluSq SINE Alu -6 307 1 808 160 15 0 chr3 214067813 214067944 -3969214 - FLAM_A SINE Alu 0 133 1 317 310 35 9 chr3 214067948 214068064 -3969094 + L1M4 LINE L1 3354 3472 -2674 1973 131 23 7 chr3 214068171 214068476 -3968682 - AluSg SINE Alu 0 310 1 1440 188 37 72 chr3 214068496 214068600 -3968558 - L1M4 LINE L1 -1037 5109 5003 2856 10 0 0 chr3 214068600 214068904 -3968254 - AluY SINE Alu -7 304 1 1440 188 37 72 chr3 214068904 214069119 -3968039 - L1M4 LINE L1 -1143 5003 4782 2053 130 10 10 chr3 214069119 214069426 -3967732 - AluSx SINE Alu -5 307 1 1440 188 37 72 chr3 214069426 214069471 -3967687 - L1M4 LINE L1 -1364 4782 4759 8499 53 1 1 chr3 214069471 214070440 -3966718 - LTR5 LTR ERVK 0 969 1 1440 188 37 72 chr3 214070440 214070504 -3966654 - L1M4 LINE L1 -1387 4759 4694 719 249 18 6 chr3 214070556 214070721 -3966437 - U2 snRNA snRNA -17 171 5 185 83 0 0 chr3 214070736 214070760 -3966398 + (A)n Simple_repeat Simple_repeat 1 24 0 23 40 0 0 chr3 214070909 214070934 -3966224 + AT_rich Low_complexity Low_complexity 1 25 0 237 167 56 0 chr3 214071114 214071168 -3965990 - AluSg/x SINE Alu -126 174 118 655 150 173 0 chr3 214071210 214071343 -3965815 - FRAM SINE Alu -28 148 1 2087 70 3 60 chr3 214071353 214071684 -3965474 + AluY SINE Alu 1 314 0 392 235 84 0 chr3 214071760 214071879 -3965279 - MIR3 SINE MIR -18 190 62 1742 157 27 20 chr3 214072420 214072713 -3964445 + AluJo SINE Alu 1 295 -17 1804 132 53 0 chr3 214072713 214072979 -3964179 + AluJb SINE Alu 1 280 -32 705 24 0 0 chr3 214072979 214073062 -3964096 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 779 257 68 7 chr3 214073062 214073354 -3963804 - L1ME1 LINE L1 -235 5931 5622 3943 84 10 12 chr3 214073429 214074241 -3962917 + L1P3 LINE L1 4854 5655 -499 441 267 0 27 chr3 214074892 214075188 -3961970 + G-rich Low_complexity Low_complexity 1 287 0 1502 146 48 3 chr3 214075608 214075903 -3961255 + AluJb SINE Alu 1 308 -4 2178 102 3 7 chr3 214075910 214076204 -3960954 + AluSx SINE Alu 1 293 -19 803 214 73 70 chr3 214076204 214076338 -3960820 - L1ME1 LINE L1 -1467 4679 4547 1743 190 48 11 chr3 214076338 214076690 -3960468 + MLT1A1 LTR MaLR 1 365 0 803 214 73 70 chr3 214076690 214076896 -3960262 - L1ME1 LINE L1 -1599 4547 4338 1732 149 3 14 chr3 214077015 214077303 -3959855 - AluJb SINE Alu -27 285 1 925 202 20 32 chr3 214077304 214077551 -3959607 - L1 LINE L1 -1496 4650 4407 2240 93 10 16 chr3 214077554 214077867 -3959291 - AluSx SINE Alu -1 311 1 1587 147 14 31 chr3 214078085 214078371 -3958787 + AluJo SINE Alu 1 281 -31 249 259 207 0 chr3 214078767 214078902 -3958256 - LTR16C LTR ERVL -250 241 79 338 314 171 58 chr3 214079039 214079249 -3957909 + L1MC4a LINE L1 6302 6487 -1321 1983 112 8 0 chr3 214079249 214079516 -3957642 + AluSq SINE Alu 29 297 -16 338 314 171 58 chr3 214079516 214079668 -3957490 + L1MC4a LINE L1 6487 6705 -1103 489 263 50 10 chr3 214079718 214079916 -3957242 + L1MC5 LINE L1 6960 7165 -796 1635 109 14 5 chr3 214079921 214080142 -3957016 + AluSq SINE Alu 86 308 -5 220 154 423 0 chr3 214080167 214080245 -3956913 - MER5A DNA MER1_type -2 187 77 6268 76 19 26 chr3 214081398 214082316 -3954842 - LTR13 LTR ERVK -96 911 1 2250 172 97 2 chr3 214082319 214082881 -3954277 - L1MC/D LINE L1 -640 5704 5104 1974 170 34 5 chr3 214083206 214083567 -3953591 + L1 LINE L1 4675 5051 -1095 216 0 0 0 chr3 214083567 214083591 -3953567 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1974 170 34 5 chr3 214083591 214083640 -3953518 + L1 LINE L1 5051 5097 -1049 2142 120 0 0 chr3 214083655 214083938 -3953220 - AluSx SINE Alu -29 283 1 429 233 173 40 chr3 214083959 214084109 -3953049 - MER5A DNA MER1_type -11 178 9 447 229 0 0 chr3 214084491 214084609 -3952549 + (CA)n Simple_repeat Simple_repeat 2 119 0 447 229 0 0 chr3 214085018 214085136 -3952022 + (TG)n Simple_repeat Simple_repeat 2 119 0 468 206 137 0 chr3 214086579 214086681 -3950477 - FLAM_C SINE Alu -16 117 2 235 135 0 0 chr3 214087557 214087594 -3949564 - MER1B DNA MER1_type -168 129 133 235 135 0 0 chr3 214087619 214087656 -3949502 - MER1B DNA MER1_type -168 129 133 235 135 0 0 chr3 214087651 214087688 -3949470 - MER1B DNA MER1_type -168 129 133 235 135 0 0 chr3 214087683 214087720 -3949438 - MER1B DNA MER1_type -168 129 133 235 135 0 0 chr3 214087777 214087814 -3949344 - MER1B DNA MER1_type -168 129 133 235 135 0 0 chr3 214087962 214087999 -3949159 - MER1B DNA MER1_type -168 129 133 699 193 15 2 chr3 214088150 214088306 -3948852 - MER1B DNA MER1_type -168 129 4 1588 154 91 25 chr3 214088408 214088693 -3948465 + AluJo SINE Alu 1 304 -8 985 156 21 84 chr3 214089441 214089679 -3947479 - AluJb SINE Alu 0 312 90 2330 112 0 0 chr3 214089890 214090194 -3946964 + AluSq SINE Alu 1 304 -9 796 105 0 0 chr3 214090718 214090823 -3946335 - AluSg/x SINE Alu -139 171 67 1397 144 5 0 chr3 214090824 214091025 -3946133 - AluSp SINE Alu -111 202 1 21 36 0 0 chr3 214092179 214092207 -3944951 + GC_rich Low_complexity Low_complexity 1 28 0 353 265 55 11 chr3 214093548 214093761 -3943397 + L2 LINE L2 2748 2974 -339 4126 55 2 24 chr3 214093974 214094556 -3942602 - L1PA7 LINE L1 -77 6077 5509 415 224 70 50 chr3 214094786 214095027 -3942131 - L1PA7 LINE L1 -781 5365 5120 2195 101 0 21 chr3 214096347 214096635 -3940523 - AluSg SINE Alu -27 283 2 284 243 9 37 chr3 214098546 214098653 -3938505 - L1M LINE L1 -765 5399 5296 1745 99 5 0 chr3 214098684 214098906 -3938252 - AluSg/x SINE Alu -25 287 65 6121 120 26 108 chr3 214098907 214099802 -3937356 - L1M1 LINE L1 -4670 2895 1928 1959 164 0 0 chr3 214099802 214100094 -3937064 - AluJb SINE Alu -10 302 11 6121 120 26 108 chr3 214100094 214100195 -3936963 - L1M1 LINE L1 -5637 1928 1820 2339 94 10 0 chr3 214100195 214100493 -3936665 - AluSp SINE Alu -12 301 1 6121 120 26 108 chr3 214100493 214100809 -3936349 - L1M1 LINE L1 -5745 1820 1690 1008 231 6 28 chr3 214100809 214101166 -3935992 - LTR2 LTR ERV1 0 449 1 2148 234 18 37 chr3 214101166 214101709 -3935449 - L1M1 LINE L1 -5872 1693 1161 823 281 43 25 chr3 214102650 214103213 -3933945 + L1MC/D LINE L1 4978 5549 -743 1532 87 0 10 chr3 214103338 214103534 -3933624 + AluSg/x SINE Alu 103 296 -14 475 208 23 0 chr3 214103537 214103667 -3933491 - L1M4 LINE L1 -3280 3102 2970 872 210 72 35 chr3 214103694 214104172 -3932986 - L1M4 LINE L1 -3733 2649 2146 2144 105 4 4 chr3 214104172 214104495 -3932663 - AluSg SINE Alu 0 325 3 21 57 0 0 chr3 214104504 214104539 -3932619 + AT_rich Low_complexity Low_complexity 1 35 0 878 83 8 8 chr3 214104539 214104659 -3932499 - FLAM_C SINE Alu -23 120 1 197 33 33 0 chr3 214105177 214105207 -3931951 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2136 122 3 3 chr3 214105209 214105495 -3931663 - AluSx SINE Alu -26 286 1 230 235 0 0 chr3 214105660 214105711 -3931447 + L2 LINE L2 3259 3309 -4 266 320 90 16 chr3 214105718 214105840 -3931318 - L3 LINE CR1 -73 1504 1374 2208 120 13 0 chr3 214105845 214106153 -3931005 + AluSx SINE Alu 1 312 0 10793 153 24 32 chr3 214106153 214108127 -3929031 + L1MA3 LINE L1 3076 5064 -1241 216 0 0 0 chr3 214108127 214108151 -3929007 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 10793 153 24 32 chr3 214108151 214108215 -3928943 + L1MA3 LINE L1 5064 5127 -1178 1948 126 0 0 chr3 214108215 214108476 -3928682 - AluSx SINE Alu -29 283 23 10793 153 24 32 chr3 214108476 214109225 -3927933 + L1MA3 LINE L1 5127 5835 -470 2281 92 3 3 chr3 214109225 214109539 -3927619 + AluSq SINE Alu 1 313 0 10793 153 24 32 chr3 214109539 214109902 -3927256 + L1MA3 LINE L1 5835 6199 -106 1631 161 29 32 chr3 214109919 214110230 -3926928 + AluJo SINE Alu 1 310 -2 646 253 67 16 chr3 214110232 214110485 -3926673 - L1M4 LINE L1 -2042 4104 3839 2110 128 3 3 chr3 214110534 214110839 -3926319 + AluSx SINE Alu 1 305 -7 726 147 6 61 chr3 214111856 214112019 -3925139 - AluSq SINE Alu -133 180 27 249 259 207 0 chr3 214112365 214112500 -3924658 + LTR16C LTR ERVL 79 241 -250 683 242 98 92 chr3 214112916 214113305 -3923853 - L1MC4a LINE L1 -1981 5827 5437 351 292 98 7 chr3 214113392 214113593 -3923565 - L1ME2 LINE L1 -137 6029 5802 23 0 0 0 chr3 214113670 214113693 -3923465 + AT_rich Low_complexity Low_complexity 1 23 0 1741 169 39 0 chr3 214113728 214114012 -3923146 + AluJb SINE Alu 9 303 -9 613 100 0 0 chr3 214114078 214114158 -3923000 - MADE1 DNA Mariner 0 80 1 1443 148 25 0 chr3 214114280 214114534 -3922624 - MER1B DNA MER1_type 0 339 119 235 135 0 0 chr3 214115405 214115442 -3921716 - MER1B DNA MER1_type -168 129 133 235 135 0 0 chr3 214115592 214115629 -3921529 - MER1B DNA MER1_type -168 129 133 668 224 15 2 chr3 214115780 214115936 -3921222 - MER1B DNA MER1_type -168 129 4 2130 128 0 47 chr3 214116241 214116377 -3920781 + AluSx SINE Alu 1 142 -170 2280 97 10 3 chr3 214116377 214116675 -3920483 + AluSg SINE Alu 1 300 -10 2130 128 0 47 chr3 214116675 214116857 -3920301 + AluSx SINE Alu 142 304 -8 2544 53 0 10 chr3 214117642 214117945 -3919213 + AluY SINE Alu 4 303 -8 812 145 0 0 chr3 214118005 214118122 -3919036 + AluJ SINE Alu 1 117 -195 800 168 84 16 chr3 214118204 214118372 -3918786 + AluJ SINE Alu 110 282 -30 190 0 0 0 chr3 214118372 214118393 -3918765 + (TAAAA)n Simple_repeat Simple_repeat 2 170 0 2070 121 37 0 chr3 214118397 214118517 -3918641 + AluSg SINE Alu 1 115 -195 216 0 0 0 chr3 214118517 214118541 -3918617 + (CA)n Simple_repeat Simple_repeat 2 25 0 2070 121 37 0 chr3 214118541 214118717 -3918441 + AluSg SINE Alu 115 308 -2 806 176 22 0 chr3 214118717 214118853 -3918305 + AluJo SINE Alu 1 139 -173 1739 173 13 3 chr3 214118857 214119158 -3918000 + AluJb SINE Alu 9 312 0 23 33 0 0 chr3 214119133 214119163 -3917995 + AT_rich Low_complexity Low_complexity 1 30 0 269 179 30 0 chr3 214119396 214119463 -3917695 - L1MD3 LINE L1 0 7995 7927 643 191 0 0 chr3 214119465 214119580 -3917578 + AluJb SINE Alu 2 116 -196 2138 108 7 0 chr3 214119580 214119877 -3917281 + AluSx SINE Alu 1 299 -13 1927 126 7 0 chr3 214119891 214120177 -3916981 + AluSx SINE Alu 9 296 -16 1550 119 43 0 chr3 214120232 214120467 -3916691 + AluSq SINE Alu 1 245 -68 2480 192 110 27 chr3 214120477 214121133 -3916025 + L1MC1 LINE L1 5624 6333 0 830 128 134 7 chr3 214124151 214124300 -3912858 - AluSp SINE Alu -9 304 137 2280 98 0 0 chr3 214124300 214124597 -3912561 - AluSp SINE Alu -16 297 1 2060 118 0 3 chr3 214124687 214124983 -3912175 + AluSq SINE Alu 1 295 -18 1953 92 4 4 chr3 214125810 214126091 -3911067 + AluSq SINE Alu 2 282 -31 1178 144 0 15 chr3 214126091 214126293 -3910865 + AluSp SINE Alu 115 313 0 469 198 160 0 chr3 214126407 214126513 -3910645 - FLAM_A SINE Alu -10 123 1 425 174 29 0 chr3 214127517 214127586 -3909572 - AluJ/FRAM SINE Alu -28 284 214 349 197 33 0 chr3 214127586 214127647 -3909511 - AluJ/FRAM SINE Alu -22 280 218 417 164 60 0 chr3 214127647 214127714 -3909444 - AluJ/FRAM SINE Alu -28 284 214 * 471 155 0 0 chr3 214127710 214127781 -3909377 - AluJ/FRAM SINE Alu -28 284 214 370 164 33 0 chr3 214127781 214127842 -3909316 - AluJ/FRAM SINE Alu -22 280 218 463 134 0 0 chr3 214127842 214127909 -3909249 - AluJ/FRAM SINE Alu -28 284 218 1183 236 36 4 chr3 214127909 214128184 -3908974 - AluJo SINE Alu -18 284 1 1962 127 10 7 chr3 214128258 214128557 -3908601 - AluSx SINE Alu -12 300 1 1562 111 7 83 chr3 214128686 214128974 -3908184 - AluSg SINE Alu -19 291 26 1736 180 36 28 chr3 214128974 214129419 -3907739 + LTR2B LTR ERV1 3 490 0 679 172 99 13 chr3 214129538 214129689 -3907469 + FRAM SINE Alu 11 174 -2 2121 149 67 44 chr3 214129718 214130153 -3907005 + MER65A LTR ERV1 1 445 0 863 161 0 0 chr3 214130761 214130891 -3906267 + FLAM_C SINE Alu 1 130 -3 1976 99 0 38 chr3 214130910 214131225 -3905933 + AluSc SINE Alu 1 304 0 218 95 24 0 chr3 214131465 214131507 -3905651 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 1298 27 0 0 chr3 214131507 214131654 -3905504 - L1PA2 LINE L1 -18 6137 5991 2400 62 0 7 chr3 214132391 214132700 -3904458 + AluY SINE Alu 1 307 -4 561 160 0 10 chr3 214132700 214132800 -3904358 - L1MC1 LINE L1 -21 6312 6214 267 146 42 0 chr3 214133213 214133261 -3903897 - MER5A DNA MER1_type -3 186 137 2280 70 7 0 chr3 214133362 214133661 -3903497 - AluSx SINE Alu -11 301 1 409 200 158 17 chr3 214133664 214133784 -3903374 - MER5A DNA MER1_type -50 139 3 1255 177 185 4 chr3 214133855 214134104 -3903054 + AluJb SINE Alu 1 294 -8 1905 115 43 4 chr3 214134132 214134410 -3902748 + AluSq SINE Alu 1 289 -24 30 27 0 0 chr3 214135215 214135252 -3901906 + AT_rich Low_complexity Low_complexity 1 37 0 1813 97 54 14 chr3 214135520 214135798 -3901360 + AluSq SINE Alu 1 289 -24 415 234 102 22 chr3 214136611 214136748 -3900410 + MER58B DNA MER1_type 194 341 0 2150 86 7 20 chr3 214136847 214137151 -3900007 + AluSp SINE Alu 1 300 -13 22 0 0 0 chr3 214137282 214137304 -3899854 + GC_rich Low_complexity Low_complexity 1 22 0 1957 90 4 0 chr3 214137578 214137844 -3899314 + AluSg SINE Alu 1 267 -43 287 64 0 21 chr3 214137857 214137904 -3899254 + (CAAAA)n Simple_repeat Simple_repeat 1 46 0 868 155 45 0 chr3 214138177 214138332 -3898826 + AluSg/x SINE Alu 136 297 -15 344 295 121 41 chr3 214138835 214139151 -3898007 + L3 LINE CR1 1085 1505 -72 2075 112 10 0 chr3 214140197 214140501 -3896657 + AluSq SINE Alu 1 307 -6 2110 103 13 10 chr3 214140508 214140818 -3896340 + AluSq SINE Alu 1 311 -2 492 185 185 8 chr3 214140845 214140964 -3896194 - AluJb SINE Alu -24 288 149 2050 88 42 0 chr3 214142131 214142415 -3894743 - AluSq SINE Alu -17 296 1 1265 173 122 36 chr3 214142510 214142637 -3894521 + AluSx SINE Alu 1 116 -186 347 0 23 0 chr3 214142637 214142680 -3894478 + (TAA)n Simple_repeat Simple_repeat 2 45 0 1265 173 122 36 chr3 214142680 214142830 -3894328 + AluSx SINE Alu 116 302 0 367 255 240 41 chr3 214142905 214143101 -3894057 - L2 LINE L2 0 3313 3079 1887 100 74 0 chr3 214143507 214143777 -3893381 + AluSx SINE Alu 1 290 -22 417 115 0 0 chr3 214144684 214144745 -3892413 + U7 snRNA snRNA 1 61 -2 32 26 0 0 chr3 214144750 214144789 -3892369 + AT_rich Low_complexity Low_complexity 1 39 0 1438 145 7 93 chr3 214144789 214145122 -3892036 + AluSx SINE Alu 1 306 0 797 203 115 11 chr3 214145133 214145315 -3891843 + AluJb SINE Alu 82 282 -30 2227 80 0 0 chr3 214146487 214146773 -3890385 + AluSg SINE Alu 12 297 -13 1048 154 0 0 chr3 214146773 214146942 -3890216 + AluSg/x SINE Alu 132 300 -9 876 154 0 0 chr3 214147439 214147582 -3889576 - FRAM SINE Alu -16 160 18 180 196 107 18 chr3 214147582 214147638 -3889520 - L2 LINE L2 -676 2638 2578 1623 142 7 61 chr3 214147715 214148025 -3889133 + AluSx SINE Alu 1 293 -19 189 0 0 0 chr3 214148028 214148049 -3889109 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 693 143 63 16 chr3 214148180 214148306 -3888852 - FLAM_C SINE Alu -1 132 1 2194 86 0 26 chr3 214148321 214148623 -3888535 - AluSx SINE Alu -17 295 2 800 167 0 0 chr3 214149177 214149303 -3887855 - FLAM_C SINE Alu -6 137 12 2238 88 0 0 chr3 214149334 214149630 -3887528 + AluSq SINE Alu 2 297 -16 197 295 33 16 chr3 214149798 214149859 -3887299 - MIR SINE MIR -112 150 89 2248 83 3 13 chr3 214150240 214150552 -3886606 + AluSg SINE Alu 1 309 -1 1914 104 7 0 chr3 214150644 214150914 -3886244 - AluSq SINE Alu -16 297 26 1936 102 10 23 chr3 214151193 214151497 -3885661 + AluSp SINE Alu 1 300 -13 217 262 131 12 chr3 214151708 214151792 -3885366 + L2 LINE L2 2962 3055 -217 2042 120 7 0 chr3 214151968 214152267 -3884891 - AluSx SINE Alu -11 301 1 1010 104 0 0 chr3 214152267 214152402 -3884756 - AluSq/x SINE Alu -177 135 1 209 208 0 19 chr3 214153608 214153661 -3883497 + GA-rich Low_complexity Low_complexity 3 54 0 2204 87 0 20 chr3 214154975 214155274 -3881884 + AluSg SINE Alu 2 294 -16 2072 101 0 0 chr3 214155448 214155726 -3881432 - AluSq SINE Alu -30 283 6 356 128 0 0 chr3 214155737 214155784 -3881374 + LTR29 LTR ERV1 576 622 0 1559 177 27 7 chr3 214156133 214156432 -3880726 - AluJb SINE Alu -7 305 1 974 201 84 5 chr3 214156432 214156646 -3880512 + L1MC3 LINE L1 5881 6111 -1674 1148 86 7 0 chr3 214156646 214156798 -3880360 + AluSq SINE Alu 1 153 -160 1050 49 28 0 chr3 214157675 214157817 -3879341 - L1PA4 LINE L1 -1 6154 6009 388 186 62 18 chr3 214157953 214157991 -3879167 - L1ME2 LINE L1 -6 6158 6123 1032 133 50 11 chr3 214157991 214158171 -3878987 - L1PA8 LINE L1 0 6172 5986 388 186 62 18 chr3 214158171 214158245 -3878913 - L1ME2 LINE L1 -41 6123 6041 1687 149 37 0 chr3 214159058 214159353 -3877805 + 7SLRNA srpRNA srpRNA 1 306 -14 432 238 119 39 chr3 214159405 214159729 -3877429 + L1ME4a LINE L1 5520 5880 -286 2105 119 0 0 chr3 214159835 214160130 -3877028 - AluSx SINE Alu -17 295 1 681 248 148 4 chr3 214160192 214160422 -3876736 - HAL1 LINE L1 0 2507 2245 2056 133 7 0 chr3 214160422 214160731 -3876427 - AluSx SINE Alu -1 311 1 243 239 45 0 chr3 214160750 214160817 -3876341 - HAL1 LINE L1 -872 1635 1566 2135 102 0 0 chr3 214160840 214161134 -3876024 - AluSx SINE Alu -18 294 1 1601 157 27 20 chr3 214161134 214161427 -3875731 - AluJo SINE Alu -16 296 1 387 235 84 0 chr3 214161968 214162087 -3875071 + MIR3 SINE MIR 62 190 -18 2087 109 0 0 chr3 214162163 214162478 -3874680 - AluSx SINE Alu 0 315 1 1546 190 3 10 chr3 214164079 214164389 -3872769 - AluJo SINE Alu -4 308 1 2185 80 3 0 chr3 214164415 214164703 -3872455 + AluSx SINE Alu 1 289 -23 551 90 79 11 chr3 214164703 214164782 -3872376 - AluJo/FRAM SINE Alu -17 295 208 340 315 30 91 chr3 214165005 214165469 -3871689 + L1MC4a LINE L1 5478 5913 -1895 475 211 83 76 chr3 214165482 214165755 -3871403 - L1MA10 LINE L1 -4 6320 5903 299 172 264 0 chr3 214165746 214165833 -3871325 - L1ME LINE L1 -335 5831 5722 * 1310 192 8 0 chr3 214165839 214166079 -3871079 - L1PB4 LINE L1 -12 6144 5903 249 146 0 0 chr3 214166082 214166130 -3871028 + (TCCC)n Simple_repeat Simple_repeat 2 49 0 1487 134 7 62 chr3 214166157 214166432 -3870726 - AluSx SINE Alu -4 308 49 2397 228 50 32 chr3 214166459 214167040 -3870118 - L1ME LINE L1 -430 5736 5167 2373 84 0 0 chr3 214167040 214167351 -3869807 - AluY SINE Alu 0 311 1 2397 228 50 32 chr3 214167351 214167475 -3869683 - L1ME LINE L1 -999 5167 5047 2743 7 0 0 chr3 214167475 214167779 -3869379 - AluY SINE Alu -7 304 1 2397 228 50 32 chr3 214167779 214167994 -3869164 - L1ME LINE L1 -1119 5047 4837 1907 130 10 10 chr3 214167994 214168301 -3868857 - AluSx SINE Alu -5 307 1 2397 228 50 32 chr3 214168301 214168349 -3868809 - L1ME LINE L1 -1329 4837 4791 7807 59 1 1 chr3 214168349 214169315 -3867843 - LTR5 LTR ERVK -3 966 1 2397 228 50 32 chr3 214169315 214169374 -3867784 - L1ME LINE L1 -1375 4791 4696 194 71 0 71 chr3 214169381 214169423 -3867735 + (TTCTCC)n Simple_repeat Simple_repeat 1 39 0 1179 223 10 33 chr3 214169997 214170302 -3866856 - AluSp SINE Alu -5 298 1 1426 149 48 3 chr3 214170309 214170604 -3866554 - AluJb SINE Alu -4 308 1 466 264 0 27 chr3 214171024 214171320 -3865838 + C-rich Low_complexity Low_complexity 1 287 0 246 356 0 0 chr3 214173752 214173839 -3863319 + MIR SINE MIR 172 258 -4 556 175 136 0 chr3 214174433 214174536 -3862622 + FLAM_C SINE Alu 1 117 -16 1151 163 55 0 chr3 214175326 214175528 -3861630 + AluJb SINE Alu 85 297 -15 528 113 0 0 chr3 214175770 214175841 -3861317 - FLAM SINE Alu -24 119 49 2006 99 0 4 chr3 214176413 214176708 -3860450 - AluY SINE Alu 0 306 13 1488 106 14 0 chr3 214176711 214176928 -3860230 + AluSg/x SINE Alu 90 309 -1 2251 185 76 6 chr3 214181844 214182719 -3854439 + L1MC/D LINE L1 4791 5704 -640 8160 68 3 4 chr3 214182722 214183730 -3853428 + LTR13 LTR ERVK 1 1007 0 280 303 84 19 chr3 214183888 214184043 -3853115 - L2 LINE L2 -448 2866 2702 22 0 0 0 chr3 214184740 214184762 -3852396 + GC_rich Low_complexity Low_complexity 1 22 0 51 17 0 0 chr3 214184872 214184930 -3852228 + GC_rich Low_complexity Low_complexity 1 58 0 186 167 0 0 chr3 214184983 214185019 -3852139 + G-rich Low_complexity Low_complexity 1 36 0 302 213 12 65 chr3 214185159 214185328 -3851830 + (CGGG)n Simple_repeat Simple_repeat 3 162 0 231 264 32 26 chr3 214185514 214185669 -3851489 + (CGGGG)n Simple_repeat Simple_repeat 1 156 0 24 67 0 0 chr3 214186005 214186050 -3851108 + GC_rich Low_complexity Low_complexity 1 45 0 212 250 59 44 chr3 214187855 214187923 -3849235 + MIR SINE MIR 61 129 -133 507 225 12 71 chr3 214188120 214188136 -3849022 - L1MA10 LINE L1 0 6334 6319 409 288 40 77 chr3 214188136 214188358 -3848800 - L1ME1 LINE L1 -4 6162 5949 847 209 18 0 chr3 214188524 214188687 -3848471 - U2 snRNA snRNA -17 171 6 222 37 0 0 chr3 214188703 214188730 -3848428 + (A)n Simple_repeat Simple_repeat 1 27 0 1985 157 0 0 chr3 214188743 214189055 -3848103 + AluSx SINE Alu 1 312 0 2061 120 0 0 chr3 214189079 214189370 -3847788 + AluSx SINE Alu 3 293 -19 772 223 79 68 chr3 214189370 214189504 -3847654 - L1M4 LINE L1 -1467 4679 4548 1790 190 48 11 chr3 214189504 214189856 -3847302 + MLT1A1 LTR MaLR 1 365 0 772 223 79 68 chr3 214189856 214190076 -3847082 - L1M4 LINE L1 -1598 4548 4321 734 225 0 0 chr3 214190076 214190214 -3846944 - FLAM_C SINE Alu -4 139 2 375 312 14 0 chr3 214190218 214190356 -3846802 - L1M4 LINE L1 -1815 4331 4192 587 100 10 60 chr3 214190356 214190456 -3846702 - L1PA8 LINE L1 0 6172 6078 1368 160 96 28 chr3 214190609 214190891 -3846267 + AluJo SINE Alu 4 304 -8 388 303 123 90 chr3 214191404 214191699 -3845459 + L1ME4a LINE L1 5656 5973 -148 1139 183 84 0 chr3 214191699 214191912 -3845246 + MER46A DNA MER2_type 2 232 -4 388 303 123 90 chr3 214191912 214192062 -3845096 + L1ME4a LINE L1 5973 6116 -5 1738 148 40 16 chr3 214192064 214192368 -3844790 + AluJb SINE Alu 1 311 -1 362 311 134 77 chr3 214193121 214193372 -3843786 + L1ME4a LINE L1 5692 5976 -145 1126 181 79 5 chr3 214193372 214193587 -3843571 + MER46A DNA MER2_type 2 232 -4 362 311 134 77 chr3 214193587 214193737 -3843421 + L1ME4a LINE L1 5976 6116 -5 1429 163 99 11 chr3 214193739 214194021 -3843137 + AluJb SINE Alu 1 307 -5 743 178 0 0 chr3 214195478 214195596 -3841562 - AluJb SINE Alu -16 296 179 2634 170 66 2 chr3 214195696 214196196 -3840962 - L1M1 LINE L1 -6779 786 255 322 161 16 0 chr3 214196197 214196259 -3840899 - L1M1 LINE L1 -7249 316 254 * 333 159 16 0 chr3 214196258 214196321 -3840837 - L1M1 LINE L1 -7248 317 254 * 356 145 16 0 chr3 214196320 214196382 -3840776 - L1M1 LINE L1 -7248 317 255 1043 231 14 111 chr3 214196383 214196733 -3840425 - L1M1 LINE L1 -7249 316 1 325 264 22 0 chr3 214196714 214196805 -3840353 + L1M4 LINE L1 4092 4184 -1962 * 2002 113 3 0 chr3 214196817 214197100 -3840058 + AluSx SINE Alu 1 284 -28 207 0 0 0 chr3 214197100 214197123 -3840035 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 740 81 0 0 chr3 214197123 214197222 -3839936 + L1PA8 LINE L1 5804 5902 -270 1920 202 31 55 chr3 214197340 214198248 -3838910 - L1ME LINE L1 -436 5730 4849 1961 136 3 0 chr3 214198250 214198545 -3838613 + AluSx SINE Alu 1 296 -16 313 133 17 0 chr3 214198752 214198812 -3838346 - Alu SINE Alu -5 297 237 1922 135 7 16 chr3 214199225 214199528 -3837630 - AluSx SINE Alu -12 300 1 1481 180 3 17 chr3 214201318 214201618 -3835540 - AluJb SINE Alu -16 296 1 516 295 104 0 chr3 214201627 214201810 -3835348 + MIR SINE MIR 29 230 -32 619 285 94 41 chr3 214206162 214206481 -3830677 - HAL1 LINE L1 -2168 339 4 264 256 133 0 chr3 214206638 214206728 -3830430 + MIR SINE MIR 49 150 -112 528 78 26 0 chr3 214209834 214209911 -3827247 - AluS SINE Alu -232 80 2 992 194 0 0 chr3 214209936 214210101 -3827057 + FRAM SINE Alu 2 166 0 392 297 62 14 chr3 214210303 214210448 -3826710 - MIR SINE MIR -79 183 32 206 331 58 14 chr3 214210625 214210764 -3826394 - L2 LINE L2 -927 2387 2243 651 13 0 0 chr3 214212867 214212943 -3824215 + (CCCG)n Simple_repeat Simple_repeat 1 76 0 22 35 0 0 chr3 214216016 214216045 -3821113 + GC_rich Low_complexity Low_complexity 1 29 0 362 265 39 0 chr3 214217748 214217850 -3819308 - L1ME1 LINE L1 -182 5984 5879 23 0 0 0 chr3 214218846 214218869 -3818289 + AT_rich Low_complexity Low_complexity 1 23 0 1454 152 68 54 chr3 214219049 214219345 -3817813 + AluJo SINE Alu 1 300 -12 2314 95 0 7 chr3 214219674 214219973 -3817185 + AluSx SINE Alu 1 293 -19 376 274 38 0 chr3 214221037 214221143 -3816015 - L2 LINE L2 -10 3303 3194 1512 128 62 114 chr3 214221206 214221564 -3815594 + MER2 DNA MER2_type 2 340 -5 21 0 0 0 chr3 214221592 214221613 -3815545 + AT_rich Low_complexity Low_complexity 1 21 0 401 247 220 16 chr3 214222699 214222885 -3814273 - MIR SINE MIR -22 240 17 1766 166 3 38 chr3 214223218 214223531 -3813627 + AluJb SINE Alu 1 302 -10 2343 114 0 0 chr3 214224160 214224467 -3812691 - AluSx SINE Alu -5 307 1 363 255 39 0 chr3 214225499 214225601 -3811557 + L1ME1 LINE L1 5879 5984 -182 312 309 100 58 chr3 214225870 214226161 -3810997 - L2 LINE L2 -3 3269 2967 699 262 92 45 chr3 214226610 214227062 -3810096 - L1ME1 LINE L1 -435 5686 5209 1458 278 143 16 chr3 214227302 214228150 -3809008 - L2 LINE L2 -1 3312 2341 2097 110 13 7 chr3 214228153 214228453 -3808705 + AluSx SINE Alu 1 302 -10 508 366 75 12 chr3 214230928 214231226 -3805932 - L1ME1 LINE L1 -1655 4491 4170 2756 119 94 4 chr3 214231226 214231695 -3805463 - MER9 LTR ERVK 0 511 1 508 366 75 12 chr3 214231695 214231716 -3805442 - L1ME1 LINE L1 -1976 4170 4152 217 290 97 0 chr3 214231757 214231850 -3805308 + L2 LINE L2 3143 3244 -28 435 250 69 0 chr3 214232269 214232385 -3804773 - MER3 DNA MER1_type -78 131 8 264 264 116 8 chr3 214232481 214232602 -3804556 + MLT1J LTR MaLR 99 232 -279 2146 171 61 18 chr3 214232873 214233318 -3803840 + L1PB4 LINE L1 5690 6153 -3 1174 194 186 4 chr3 214233801 214234059 -3803099 + AluSx SINE Alu 1 305 -7 207 114 0 0 chr3 214236151 214236186 -3800972 + (GAA)n Simple_repeat Simple_repeat 3 37 0 294 29 0 0 chr3 214236967 214237002 -3800156 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 228 213 0 0 chr3 214239647 214239694 -3797464 + MLT2D LTR ERVL 249 295 -119 320 175 0 19 chr3 214244582 214244725 -3792433 + AluJo SINE Alu 72 286 -16 363 255 39 0 chr3 214244922 214245024 -3792134 - L1ME1 LINE L1 -182 5984 5879 2270 98 0 7 chr3 214246057 214246352 -3790806 + AluSx SINE Alu 1 293 -19 390 248 48 9 chr3 214247421 214247526 -3789632 - L2 LINE L2 -11 3302 3194 1474 129 64 115 chr3 214247589 214247946 -3789212 + MER2 DNA MER2_type 2 340 -5 21 0 0 0 chr3 214247974 214247995 -3789163 + AT_rich Low_complexity Low_complexity 1 21 0 391 247 220 16 chr3 214249081 214249267 -3787891 - MIR SINE MIR -22 240 17 1799 168 0 38 chr3 214249600 214249915 -3787243 + AluJb SINE Alu 1 303 -9 2343 114 0 0 chr3 214250544 214250851 -3786307 - AluSx SINE Alu -5 307 1 194 313 30 15 chr3 214250947 214251014 -3786144 - L2 LINE L2 -252 3061 2994 2113 136 0 10 chr3 214251479 214251787 -3785371 - AluSx SINE Alu -7 305 1 22 35 0 0 chr3 214251844 214251873 -3785285 + AT_rich Low_complexity Low_complexity 1 29 0 4153 157 44 85 chr3 214251883 214253100 -3784058 - L1MA9 LINE L1 0 6312 5152 188 162 54 0 chr3 214253247 214253284 -3783874 + MIR SINE MIR 110 148 -60 181 255 21 0 chr3 214253341 214253388 -3783770 - MIR SINE MIR -90 172 125 424 241 130 6 chr3 214254043 214254205 -3782953 - MER3 DNA MER1_type -9 200 19 2078 89 14 4 chr3 214254568 214254884 -3782274 + AluSx SINE Alu 1 319 0 1568 158 132 0 chr3 214254926 214255192 -3781966 - AluJo SINE Alu -11 301 1 351 249 64 75 chr3 214256816 214256989 -3780169 - L1 LINE L1 -824 5322 5152 188 162 54 0 chr3 214257137 214257174 -3779984 + MIR SINE MIR 110 148 -60 450 238 128 6 chr3 214257932 214258096 -3779062 - MER3 DNA MER1_type -7 202 19 1986 151 6 3 chr3 214258460 214258771 -3778387 + AluSx SINE Alu 1 312 0 1958 119 0 0 chr3 214259813 214260074 -3777084 + AluSq SINE Alu 36 296 -17 1071 225 33 7 chr3 214260074 214260350 -3776808 + L1M4 LINE L1 4116 4398 -1748 245 128 0 0 chr3 214260336 214260375 -3776783 + L1M3 LINE L1 5699 5737 -434 * 1537 161 4 4 chr3 214260377 214260626 -3776532 + AluJb SINE Alu 64 312 0 187 300 62 75 chr3 214261463 214261623 -3775535 - L2 LINE L2 -58 3255 3098 286 128 0 0 chr3 214261649 214261696 -3775462 - MADE1 DNA Mariner -33 47 1 318 253 40 10 chr3 214262008 214262206 -3774952 - L2 LINE L2 -285 2987 2776 204 40 0 0 chr3 214265506 214265531 -3771627 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 207 114 0 0 chr3 214266316 214266351 -3770807 + (TTC)n Simple_repeat Simple_repeat 3 37 0 304 293 130 46 chr3 214268312 214268813 -3768345 - L1ME LINE L1 -347 5823 5296 2267 94 3 3 chr3 214268844 214269131 -3768027 - AluSx SINE Alu -25 287 1 2201 111 3 3 chr3 214269270 214269567 -3767591 + AluSp SINE Alu 1 297 -16 272 171 114 0 chr3 214270745 214270815 -3766343 + MER5A DNA MER1_type 47 124 -65 206 193 88 114 chr3 214271593 214271707 -3765451 + MER5A DNA MER1_type 77 187 -2 488 264 44 31 chr3 214271709 214271732 -3765426 - L1MC5 LINE L1 -772 7189 7168 1521 113 14 5 chr3 214271732 214271953 -3765205 - AluSq SINE Alu -5 308 86 488 264 44 31 chr3 214271953 214272156 -3765002 - L1MC5 LINE L1 -793 7168 6960 1763 88 0 0 chr3 214272356 214272582 -3764576 - AluSg/x SINE Alu -14 296 71 857 135 7 7 chr3 214273368 214273509 -3763649 - AluJo SINE Alu -171 141 1 352 309 118 17 chr3 214273688 214273866 -3763292 - L1ME4a LINE L1 -251 5870 5675 2165 104 27 0 chr3 214275383 214275681 -3761477 + AluSx SINE Alu 1 306 -6 21 71 0 0 chr3 214277654 214277696 -3759462 + GC_rich Low_complexity Low_complexity 1 42 0 230 231 0 39 chr3 214278032 214278110 -3759048 + (CCCCG)n Simple_repeat Simple_repeat 2 76 0 864 143 7 0 chr3 214278669 214278809 -3758349 - AluJo SINE Alu -171 141 1 253 255 78 26 chr3 214279075 214279228 -3757930 - L1ME LINE L1 -356 5765 5605 804 82 0 0 chr3 214279289 214279399 -3757759 - AluSp/q SINE Alu -17 296 187 447 98 0 0 chr3 214279399 214279460 -3757698 + AluY SINE Alu 214 274 -37 354 329 77 23 chr3 214279906 214280216 -3756942 - L1ME1 LINE L1 -172 5994 5668 1497 65 172 53 chr3 214282526 214282788 -3754370 + AluSx SINE Alu 1 293 -19 224 130 22 0 chr3 214284370 214284416 -3752742 + GA-rich Low_complexity Low_complexity 1 47 0 190 173 133 27 chr3 214285718 214285793 -3751365 + MIR SINE MIR 172 254 -8 2054 92 46 0 chr3 214285794 214286078 -3751080 - AluSp SINE Alu -16 297 1 1035 255 141 40 chr3 214286096 214286487 -3750671 - MER20B DNA MER1_type -65 718 243 1732 125 103 0 chr3 214286487 214286768 -3750390 + AluSx SINE Alu 1 310 -2 1035 255 141 40 chr3 214286768 214286977 -3750181 - MER20B DNA MER1_type -540 243 57 429 289 127 5 chr3 214287851 214288048 -3749110 + MER102a DNA MER1_type 98 318 -12 573 259 0 4 chr3 214289207 214289490 -3747668 + (CA)n Simple_repeat Simple_repeat 1 281 0 470 276 29 11 chr3 214289870 214290044 -3747114 - MER53 DNA DNA -12 177 1 2100 102 0 3 chr3 214290051 214290358 -3746800 - AluSx SINE Alu 0 306 1 32 0 0 0 chr3 214290927 214290959 -3746199 + AT_rich Low_complexity Low_complexity 1 32 0 3233 149 38 74 chr3 214290963 214291228 -3745930 - L1MC1 LINE L1 -1 6332 6059 2109 114 0 3 chr3 214291228 214291526 -3745632 + AluSx SINE Alu 1 297 -15 3233 149 38 74 chr3 214291526 214292044 -3745114 - L1MC1 LINE L1 -274 6059 5577 1165 70 0 6 chr3 214292044 214292202 -3744956 + AluY SINE Alu 149 305 -6 851 174 0 166 chr3 214292202 214292324 -3744834 - L1MC1 LINE L1 -773 5586 5445 1810 171 7 0 chr3 214292324 214292623 -3744535 - AluJb SINE Alu -9 303 3 851 174 0 166 chr3 214292623 214292886 -3744272 - L1MC1 LINE L1 -914 5445 5265 2054 122 3 0 chr3 214292897 214293192 -3743966 - AluSx SINE Alu -16 296 1 26 30 0 0 chr3 214293243 214293276 -3743882 + AT_rich Low_complexity Low_complexity 1 33 0 1956 142 0 16 chr3 214293499 214293809 -3743349 - AluJb SINE Alu -7 305 1 563 186 52 0 chr3 214293839 214293936 -3743222 + FLAM_C SINE Alu 19 120 -23 271 333 67 12 chr3 214294140 214294305 -3742853 - L1ME LINE L1 -347 5823 5650 301 234 9 37 chr3 214294530 214294637 -3742521 - L1ME LINE L1 -765 5399 5296 1865 141 7 16 chr3 214294641 214294946 -3742212 - AluSx SINE Alu 0 312 11 6811 68 18 17 chr3 214294946 214295934 -3741224 + LTR13 LTR ERVK 19 1007 0 298 310 77 13 chr3 214296092 214296247 -3740911 - L2 LINE L2 -448 2866 2702 800 292 40 29 chr3 214296818 214297456 -3739702 + L1ME4a LINE L1 4978 5630 -595 1457 167 99 11 chr3 214298119 214298401 -3738757 - AluJb SINE Alu -5 307 1 477 306 134 77 chr3 214298403 214298553 -3738605 - L1ME4a LINE L1 -5 6116 5976 1166 178 84 0 chr3 214298553 214298766 -3738392 - MER46A DNA MER2_type -4 232 2 477 306 134 77 chr3 214298766 214299017 -3738141 - L1ME4a LINE L1 -145 5976 5692 1078 171 131 14 chr3 214299577 214299799 -3737359 - AluJo SINE Alu -6 306 59 275 329 132 0 chr3 214300217 214300384 -3736774 + L1ME4a LINE L1 5612 5800 -321 742 279 51 25 chr3 214300476 214300713 -3736445 + MIR SINE MIR 20 262 0 305 299 54 0 chr3 214300887 214301034 -3736124 + L1ME4a LINE L1 5961 6115 -6 559 299 101 50 chr3 214301383 214301489 -3735669 - L1M4 LINE L1 -1705 4441 4342 1727 150 9 53 chr3 214301489 214301809 -3735349 - AluJo SINE Alu -6 306 1 559 299 101 50 chr3 214301809 214302344 -3734814 - L1M4 LINE L1 -1804 4342 3767 1253 211 7 4 chr3 214302350 214302629 -3734529 - AluSx SINE Alu -15 297 18 21 0 0 0 chr3 214302728 214302749 -3734409 + GC_rich Low_complexity Low_complexity 1 21 0 1928 89 0 11 chr3 214314835 214315154 -3722004 + AluSg SINE Alu 14 329 0 226 282 176 14 chr3 214315154 214315370 -3721788 + L1ME4a LINE L1 5871 6121 0 415 330 47 16 chr3 214315575 214315766 -3721392 + MIR3 SINE MIR 12 208 0 197 265 0 20 chr3 214316308 214316357 -3720801 + MIR SINE MIR 20 67 -195 286 250 181 35 chr3 214319222 214319366 -3717792 - MIR SINE MIR -51 211 47 2256 74 0 13 chr3 214319625 214319924 -3717234 + AluY SINE Alu 1 295 -16 314 311 126 37 chr3 214321837 214322027 -3715131 + L1M4c LINE L1 1101 1307 -5077 2146 98 3 0 chr3 214322038 214322386 -3714772 + AluSx SINE Alu 1 312 0 198 336 36 45 chr3 214324876 214324986 -3712172 + MIR SINE MIR 111 219 -43 1905 100 57 0 chr3 214324994 214325274 -3711884 + AluSx SINE Alu 1 296 -16 2112 111 7 0 chr3 214326004 214326311 -3710847 - AluSx SINE Alu -3 309 1 384 227 0 0 chr3 214326701 214326776 -3710382 - MIR SINE MIR -97 111 37 417 287 84 72 chr3 214326882 214327311 -3709847 - L2 LINE L2 0 3313 2880 1898 146 33 0 chr3 214327353 214327655 -3709503 - AluSx SINE Alu 0 312 1 1438 128 0 0 chr3 214327692 214327895 -3709263 + AluSq SINE Alu 1 203 -110 814 105 0 0 chr3 214328326 214328440 -3708718 + AluSg/x SINE Alu 199 312 0 214 356 0 14 chr3 214328500 214328573 -3708585 - L2 LINE L2 -4 3309 3238 220 368 114 2 chr3 214329740 214329832 -3707326 + MIR SINE MIR 60 160 -48 1527 161 89 156 chr3 214330080 214330676 -3706482 - LTR38B LTR ERV1 -54 556 1 303 183 14 14 chr3 214332507 214332578 -3704580 + MER5A DNA MER1_type 2 72 -117 761 154 23 8 chr3 214332609 214332739 -3704419 - FLAM_C SINE Alu 0 133 2 2340 88 0 0 chr3 214333223 214333519 -3703639 - AluSx SINE Alu -16 296 1 734 270 4 27 chr3 214333604 214333867 -3703291 + L1ME4a LINE L1 5503 5759 -362 2088 95 32 3 chr3 214333913 214334198 -3702960 + AluSq SINE Alu 1 293 -20 380 32 0 63 chr3 214334236 214334299 -3702859 + (CA)n Simple_repeat Simple_repeat 2 60 0 398 291 209 18 chr3 214334660 214334800 -3702358 + L1ME4a LINE L1 5784 5896 -225 2359 68 0 7 chr3 214334800 214335108 -3702050 - AluY SINE Alu -5 306 1 398 291 209 18 chr3 214335108 214335187 -3701971 + L1ME4a LINE L1 5896 6045 -76 713 312 84 44 chr3 214335221 214335385 -3701773 - L1M4 LINE L1 -1645 4501 4345 1727 150 9 53 chr3 214335385 214335705 -3701453 - AluJo SINE Alu -6 306 1 713 312 84 44 chr3 214335705 214336237 -3700921 - L1M4 LINE L1 -1801 4345 3766 1792 105 3 85 chr3 214336237 214336569 -3700589 - AluSx SINE Alu 0 307 1 713 312 84 44 chr3 214336569 214336667 -3700491 - L1M4 LINE L1 -2380 3766 3673 322 315 54 15 chr3 214336676 214336806 -3700352 - L1M4 LINE L1 -2503 3643 3509 250 95 24 0 chr3 214336829 214336871 -3700287 - Alu SINE Alu -11 290 248 2229 105 0 7 chr3 214341604 214341910 -3695248 - AluSx SINE Alu -8 304 1 415 235 147 0 chr3 214341935 214342037 -3695121 - L1ME4a LINE L1 0 6121 6005 1569 86 14 0 chr3 214342439 214342648 -3694510 + AluSp SINE Alu 83 294 -19 2235 113 0 0 chr3 214343386 214343695 -3693463 - AluSx SINE Alu -3 309 1 192 338 25 0 chr3 214346108 214346188 -3690970 - MIR SINE MIR -63 145 64 25 31 0 0 chr3 214352120 214352152 -3685006 + GC_rich Low_complexity Low_complexity 1 32 0 222 184 0 0 chr3 214352668 214352706 -3684452 + C-rich Low_complexity Low_complexity 3 40 0 196 320 130 30 chr3 214352708 214352808 -3684350 + L3 LINE CR1 983 1092 -485 1997 103 6 29 chr3 214365594 214365905 -3671253 + AluSx SINE Alu 1 304 -8 241 169 31 15 chr3 214365949 214366014 -3671144 + (TA)n Simple_repeat Simple_repeat 2 67 0 549 266 71 64 chr3 214369364 214369430 -3667728 - L1MC4a LINE L1 -1921 5887 5823 2317 82 10 0 chr3 214369430 214369733 -3667425 - AluSq SINE Alu -7 306 1 549 266 71 64 chr3 214369733 214369948 -3667210 - L1MC4a LINE L1 -1985 5823 5604 358 268 102 13 chr3 214370030 214370187 -3666971 - L1MC4a LINE L1 -2318 5490 5320 2197 94 0 47 chr3 214370541 214370859 -3666299 - AluSg SINE Alu -7 303 1 346 337 105 12 chr3 214370913 214371085 -3666073 + MIR SINE MIR 74 261 -1 1696 168 3 31 chr3 214373313 214373634 -3663524 - AluJo SINE Alu 0 312 1 1386 170 3 56 chr3 214373754 214374060 -3663098 - AluJb SINE Alu -22 290 1 252 0 0 0 chr3 214374166 214374194 -3662964 + (TC)n Simple_repeat Simple_repeat 2 29 0 2134 118 0 13 chr3 214374214 214374529 -3662629 - AluSx SINE Alu 0 312 2 22 35 0 0 chr3 214374565 214374594 -3662564 + AT_rich Low_complexity Low_complexity 1 29 0 310 202 87 0 chr3 214374594 214374663 -3662495 - L1MC4 LINE L1 -1333 6989 1995 1986 107 4 7 chr3 214374670 214374951 -3662207 - AluSx SINE Alu -30 282 3 281 64 43 0 chr3 214374956 214375003 -3662155 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 776 154 0 0 chr3 214375003 214375120 -3662038 - FLAM_C SINE Alu -25 118 2 1801 142 28 0 chr3 214375672 214375960 -3661198 - AluJb SINE Alu -14 298 3 309 297 33 0 chr3 214376100 214376191 -3660967 - L2 LINE L2 0 3272 3179 2160 113 0 0 chr3 214376721 214377013 -3660145 - AluSx SINE Alu -18 294 3 489 34 0 0 chr3 214377062 214377121 -3660037 + (TCCC)n Simple_repeat Simple_repeat 4 62 0 254 233 0 0 chr3 214377145 214377188 -3659970 - FRAM/FAM SINE Alu -132 43 1 274 270 190 0 chr3 214377362 214377462 -3659696 + MIR3 SINE MIR 77 195 -13 231 272 32 95 chr3 214377572 214377621 -3659537 + MIR SINE MIR 47 98 -110 2158 84 3 0 chr3 214377621 214377929 -3659229 - AluSp SINE Alu 0 309 1 231 272 32 95 chr3 214377929 214378036 -3659122 + MIR SINE MIR 98 195 -13 867 299 61 42 chr3 214378453 214378974 -3658184 - L1MC4 LINE L1 -5146 1270 740 594 179 32 16 chr3 214379553 214379676 -3657482 + L2 LINE L2 3179 3303 -10 357 218 30 20 chr3 214379738 214379839 -3657319 - MER20B DNA MER1_type -11 772 671 234 188 21 0 chr3 214380008 214380056 -3657102 + LTR16A1 LTR ERVL 53 101 -356 490 234 119 2 chr3 214380092 214380308 -3656850 + LTR16A LTR ERVL 166 443 -7 283 236 64 82 chr3 214380308 214380344 -3656814 - MER20B DNA MER1_type -129 654 619 2021 111 42 0 chr3 214380344 214380632 -3656526 + AluSx SINE Alu 1 300 -12 283 236 64 82 chr3 214380632 214380705 -3656453 - MER20B DNA MER1_type -164 619 547 728 273 121 7 chr3 214380830 214381224 -3655934 - MER20B DNA MER1_type -251 532 2 255 277 0 0 chr3 214381224 214381282 -3655876 - MER20B DNA MER1_type -725 58 1 486 289 64 25 chr3 214381299 214381503 -3655655 - MIR SINE MIR -43 219 8 1845 126 11 11 chr3 214381557 214381884 -3655274 - AluSg SINE Alu 0 327 1 2071 93 7 10 chr3 214381886 214382187 -3654971 - AluSq SINE Alu -12 301 2 213 278 0 0 chr3 214382200 214382254 -3654904 - MER5B DNA MER1_type -124 54 1 188 264 0 28 chr3 214382427 214382499 -3654659 + L2 LINE L2 1129 1198 -2116 416 276 24 29 chr3 214382500 214382670 -3654488 - LTR16B LTR ERVL -1 463 295 4118 92 9 11 chr3 214383074 214383532 -3653626 + MER41A LTR ERV1 1 459 -95 2149 82 9 31 chr3 214383532 214383849 -3653309 + AluSg SINE Alu 1 310 0 4118 92 9 11 chr3 214383849 214383945 -3653213 + MER41A LTR ERV1 459 554 0 295 298 117 0 chr3 214385158 214385252 -3651906 + L2 LINE L2 3143 3247 -25 1091 186 41 5 chr3 214386316 214386536 -3650622 + AluJb SINE Alu 85 312 0 454 102 19 46 chr3 214386580 214386688 -3650470 + (GAAA)n Simple_repeat Simple_repeat 4 108 0 2270 93 3 0 chr3 214386719 214387021 -3650137 - AluSp SINE Alu -10 303 1 224 236 0 0 chr3 214387190 214387245 -3649913 + A-rich Low_complexity Low_complexity 1 55 0 906 89 0 0 chr3 214387559 214387682 -3649476 - AluSg SINE Alu -187 123 1 1933 123 10 3 chr3 214388272 214388573 -3648585 - AluSg SINE Alu -7 303 1 678 171 0 0 chr3 214388757 214388868 -3648290 - FRAM SINE Alu -25 151 41 1936 94 65 4 chr3 214388879 214389156 -3648002 - AluSc SINE Alu -15 294 1 309 268 103 88 chr3 214389169 214389199 -3647959 + L1ME4a LINE L1 5170 5198 -948 1328 142 50 50 chr3 214389199 214389501 -3647657 + AluSx SINE Alu 1 302 0 309 268 103 88 chr3 214389501 214389664 -3647494 + L1ME4a LINE L1 5198 5366 -780 536 279 74 63 chr3 214389668 214389737 -3647421 + L1ME4a LINE L1 5376 5443 -678 2172 112 0 0 chr3 214389737 214390032 -3647126 - AluSq SINE Alu -18 295 1 536 279 74 63 chr3 214390032 214390141 -3647017 + L1ME4a LINE L1 5443 5549 -572 1992 110 24 3 chr3 214390141 214390432 -3646726 - AluJb SINE Alu -11 301 5 536 279 74 63 chr3 214390432 214390660 -3646498 + L1ME4a LINE L1 5549 5793 -328 2065 96 26 13 chr3 214390660 214390963 -3646195 + AluSp SINE Alu 1 307 -6 536 279 74 63 chr3 214390963 214391121 -3646037 + L1ME4a LINE L1 5793 5948 -173 2412 80 0 0 chr3 214391228 214391541 -3645617 - AluSq SINE Alu 0 313 1 2135 116 0 3 chr3 214391543 214391835 -3645323 - AluSx SINE Alu -21 291 1 359 270 112 66 chr3 214391854 214392113 -3645045 + L1MC5 LINE L1 7499 7769 -192 182 354 52 0 chr3 214392701 214392797 -3644361 + L2 LINE L2 2949 3049 -223 359 192 41 0 chr3 214393078 214393151 -3644007 + MLT1F LTR MaLR 465 540 -2 351 281 123 0 chr3 214393264 214393410 -3643748 - MIR SINE MIR -3 259 96 243 256 141 26 chr3 214393459 214393537 -3643621 + MIR SINE MIR 51 137 -71 2217 110 7 0 chr3 214393540 214393848 -3643310 - AluSx SINE Alu -2 310 1 219 69 0 0 chr3 214394026 214394055 -3643103 + (TG)n Simple_repeat Simple_repeat 2 30 0 592 221 33 17 chr3 214394691 214394872 -3642286 - MER53 DNA DNA 0 189 6 325 239 65 0 chr3 214397014 214397106 -3640052 - MIR3 SINE MIR -7 201 104 2213 105 3 3 chr3 214397827 214398132 -3639026 + AluSg SINE Alu 1 305 -5 406 337 134 18 chr3 214398720 214399168 -3637990 + L2 LINE L2 2809 3308 -5 2102 119 3 0 chr3 214399237 214399539 -3637619 + AluSx SINE Alu 1 303 -9 26 0 0 0 chr3 214399582 214399608 -3637550 + AT_rich Low_complexity Low_complexity 1 26 0 829 147 8 0 chr3 214399655 214399669 -3637489 - AluJo SINE Alu -177 135 123 180 0 0 0 chr3 214399669 214399689 -3637469 + (TG)n Simple_repeat Simple_repeat 1 20 0 829 147 8 0 chr3 214399689 214399803 -3637355 - AluJo SINE Alu -189 123 6 730 238 47 0 chr3 214399806 214399978 -3637180 - L1MA8 LINE L1 -46 6245 6066 2567 20 0 3 chr3 214400006 214400304 -3636854 - AluY SINE Alu -14 297 1 2104 204 37 24 chr3 214400310 214400801 -3636357 - L1MA8 LINE L1 -142 6149 5653 2294 93 0 0 chr3 214400835 214401146 -3636012 - AluY SINE Alu 0 311 1 1864 152 3 3 chr3 214401148 214401444 -3635714 - AluJo SINE Alu -16 296 1 230 225 0 54 chr3 214401452 214401563 -3635595 + (CCCA)n Simple_repeat Simple_repeat 3 107 0 2368 136 17 2 chr3 214401567 214401995 -3635163 - L1MA8 LINE L1 -622 5669 5236 277 390 0 14 chr3 214402383 214402524 -3634634 + L2 LINE L2 3129 3267 -5 23 0 0 0 chr3 214402806 214402829 -3634329 + AT_rich Low_complexity Low_complexity 1 23 0 1580 163 38 24 chr3 214403044 214403333 -3633825 + AluJo SINE Alu 5 297 -15 452 278 162 66 chr3 214403651 214403850 -3633308 - L1ME4a LINE L1 -63 6058 5880 2546 167 16 25 chr3 214403850 214404288 -3632870 + Tigger2a DNA MER2_type 1 434 0 452 278 162 66 chr3 214404288 214404314 -3632844 - L1ME4a LINE L1 -241 5880 5858 1642 181 7 0 chr3 214404314 214404636 -3632522 - AluJb SINE Alu 0 312 1 452 278 162 66 chr3 214404636 214404834 -3632324 - L1ME4a LINE L1 -263 5858 5593 1973 111 17 17 chr3 214404844 214404975 -3632183 + AluSx SINE Alu 1 131 -181 1748 134 10 13 chr3 214404975 214405273 -3631885 + AluSc SINE Alu 1 297 -12 1973 111 17 17 chr3 214405273 214405439 -3631719 + AluSx SINE Alu 130 298 -14 1564 266 27 31 chr3 214406123 214406639 -3630519 + LTR40a LTR ERVL 6 519 0 2107 80 70 0 chr3 214408945 214409232 -3627926 + AluSx SINE Alu 1 307 -5 273 139 0 0 chr3 214409232 214409275 -3627883 + FLAM SINE Alu 85 127 -6 260 295 64 0 chr3 214410216 214410294 -3626864 - MIR3 SINE MIR -40 168 86 1368 221 86 37 chr3 214411329 214411736 -3625422 + MLT1C LTR MaLR 6 432 -35 2127 109 3 6 chr3 214412307 214412620 -3624538 - AluSp SINE Alu -1 312 1 2204 75 0 0 chr3 214413000 214413329 -3623829 + AluSg SINE Alu 1 329 0 248 259 123 37 chr3 214413383 214413545 -3623613 + L1ME4a LINE L1 5946 6121 0 370 330 47 16 chr3 214413750 214413941 -3623217 + MIR3 SINE MIR 12 208 0 192 265 0 20 chr3 214414483 214414532 -3622626 + MIR SINE MIR 20 67 -195 271 200 209 36 chr3 214417837 214417947 -3619211 - MIR SINE MIR -87 175 47 2245 77 0 10 chr3 214418206 214418505 -3618653 + AluSx SINE Alu 1 296 -16 288 200 32 0 chr3 214420377 214420472 -3616686 + GA-rich Low_complexity Low_complexity 1 98 0 234 161 54 0 chr3 214420499 214420555 -3616603 + GA-rich Low_complexity Low_complexity 1 59 0 2119 98 3 0 chr3 214420559 214420919 -3616239 + AluSx SINE Alu 1 312 0 1919 96 57 0 chr3 214423527 214423807 -3613351 + AluSx SINE Alu 1 296 -16 1751 237 50 82 chr3 214424509 214424537 -3612621 - L1M4 LINE L1 -843 5303 5276 1850 123 3 55 chr3 214424537 214424863 -3612295 - AluSx SINE Alu -3 309 1 1751 237 50 82 chr3 214424863 214425626 -3611532 - L1M4 LINE L1 -870 5276 4537 806 136 8 0 chr3 214425656 214425781 -3611377 + AluSq/x SINE Alu 1 126 -187 194 273 0 0 chr3 214433837 214433892 -3603266 - L2 LINE L2 -24 3248 3194 2386 71 7 3 chr3 214435018 214435327 -3601831 - AluSp SINE Alu -2 311 2 645 292 64 26 chr3 214440080 214440170 -3596988 - MIR SINE MIR -7 255 170 377 221 13 0 chr3 214440170 214440247 -3596911 - MER116 DNA Mariner 0 80 3 645 292 64 26 chr3 214440247 214440389 -3596769 - MIR SINE MIR -92 170 14 186 256 0 0 chr3 214440505 214440544 -3596614 - L2 LINE L2 -1 3271 3233 754 286 15 5 chr3 214441454 214441650 -3595508 - MIR SINE MIR -48 214 17 544 117 0 27 chr3 214442182 214442293 -3594865 + (TGG)n Simple_repeat Simple_repeat 3 110 0 725 294 70 98 chr3 214442411 214442566 -3594592 - L1M4 LINE L1 -2503 3643 3485 1686 123 78 0 chr3 214442566 214442835 -3594323 - AluY SINE Alu -21 290 1 725 294 70 98 chr3 214442835 214442883 -3594275 - L1M4 LINE L1 -2661 3485 3437 2137 98 7 0 chr3 214442883 214443202 -3593956 + AluSx SINE Alu 1 312 0 725 294 70 98 chr3 214443202 214443581 -3593577 - L1M4 LINE L1 -2709 3437 3076 382 272 112 47 chr3 214443698 214443867 -3593291 - L1MEd LINE L1 -5933 186 7 1103 164 6 0 chr3 214444607 214444784 -3592374 + AluJo SINE Alu 5 182 -130 443 63 16 0 chr3 214444826 214444889 -3592269 + (TC)n Simple_repeat Simple_repeat 1 64 0 869 129 0 50 chr3 214445128 214445298 -3591860 - FLAM_C SINE Alu 0 133 1 2011 130 6 19 chr3 214445727 214446043 -3591115 - AluSx SINE Alu 0 312 1 6534 92 25 0 chr3 214446112 214447753 -3589405 - L1PA8 LINE L1 0 6172 4339 194 273 0 0 chr3 214454424 214454479 -3582679 - L2 LINE L2 -24 3248 3194 218 133 66 60 chr3 214454641 214454807 -3582351 + (GTATG)n Simple_repeat Simple_repeat 5 171 0 * 317 322 0 0 chr3 214454751 214455273 -3581885 + GA-rich Low_complexity Low_complexity 1 522 0 228 128 64 64 chr3 214455010 214455182 -3581976 + (GTATG)n Simple_repeat Simple_repeat 5 176 0 * 207 151 58 58 chr3 214455205 214455432 -3581726 + (GTATG)n Simple_repeat Simple_repeat 1 227 0 2370 72 7 3 chr3 214455934 214456241 -3580917 - AluSp SINE Alu -4 309 2 238 135 65 59 chr3 214461027 214461197 -3575961 + (GTATG)n Simple_repeat Simple_repeat 1 171 0 226 144 58 64 chr3 214461416 214461589 -3575569 + (GTATG)n Simple_repeat Simple_repeat 5 176 0 218 326 0 6 chr3 214461668 214461846 -3575312 + GA-rich Low_complexity Low_complexity 2 178 0 * 228 144 58 64 chr3 214461747 214461920 -3575238 + (GTATG)n Simple_repeat Simple_repeat 5 176 0 235 161 52 63 chr3 214461958 214462132 -3575026 + (GTATG)n Simple_repeat Simple_repeat 5 176 0 205 333 0 0 chr3 214462241 214462397 -3574761 + GA-rich Low_complexity Low_complexity 2 157 0 217 146 64 58 chr3 214462590 214462761 -3574397 + (GTATG)n Simple_repeat Simple_repeat 5 176 0 2316 71 6 10 chr3 214463364 214463675 -3573483 - AluSp SINE Alu -2 311 2 1038 134 0 5 chr3 214466015 214466335 -3570823 + (TGG)n Simple_repeat Simple_repeat 1 503 -62 1102 92 0 32 chr3 214466335 214466520 -3570638 + (ATGGTG)n Simple_repeat Simple_repeat 2 180 0 1038 134 0 5 chr3 214466520 214466583 -3570575 + (TGG)n Simple_repeat Simple_repeat 503 565 0 776 286 18 14 chr3 214466617 214466837 -3570321 - MIR SINE MIR -41 221 1 213 315 14 0 chr3 214467053 214467126 -3570032 + (GCTG)n Simple_repeat Simple_repeat 4 77 0 2217 116 0 0 chr3 214467684 214467978 -3569180 + AluSx SINE Alu 1 294 -18 303 340 64 21 chr3 214468006 214468147 -3569011 - L2 LINE L2 -3 3310 3164 205 261 174 11 chr3 214469033 214469125 -3568033 + MIR3 SINE MIR 99 205 -3 341 259 0 29 chr3 214469592 214469731 -3567427 + (CCCTG)n Simple_repeat Simple_repeat 4 138 0 357 356 103 6 chr3 214470677 214470851 -3566307 + MIR SINE MIR 49 239 -23 204 176 0 82 chr3 214471153 214471429 -3565729 + (CGGTG)n Simple_repeat Simple_repeat 1 253 0 977 271 155 22 chr3 214473460 214473874 -3563284 + L2 LINE L2 2843 3311 -2 2040 96 4 0 chr3 214474027 214474297 -3562861 - AluSq SINE Alu -32 281 11 2148 84 3 27 chr3 214475074 214475373 -3561785 + AluSx SINE Alu 1 292 -20 2224 110 0 3 chr3 214476985 214477446 -3559712 + AluSc SINE Alu 1 460 0 239 114 23 0 chr3 214478051 214478095 -3559063 + (CA)n Simple_repeat Simple_repeat 2 46 0 1431 183 7 7 chr3 214478488 214478761 -3558397 + AluSx SINE Alu 40 312 0 890 196 0 0 chr3 214478767 214478925 -3558233 + FRAM SINE Alu 4 161 -5 748 164 12 0 chr3 214478945 214479192 -3557966 + (CATA)n Simple_repeat Simple_repeat 1 250 0 203 79 26 0 chr3 214479205 214479243 -3557915 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 182 254 45 30 chr3 214481895 214481962 -3555196 + L2 LINE L2 3024 3091 -181 385 270 132 37 chr3 214482040 214482229 -3554929 + MIR SINE MIR 56 262 0 238 270 56 0 chr3 214483541 214483667 -3553491 + (CCCCAG)n Simple_repeat Simple_repeat 1 133 0 215 272 148 0 chr3 214483673 214483754 -3553404 + MIR3 SINE MIR 97 189 -19 329 299 54 0 chr3 214484050 214484197 -3552961 - L1ME4a LINE L1 -6 6115 5961 714 283 51 25 chr3 214484371 214484608 -3552550 - MIR SINE MIR 0 262 20 291 335 132 0 chr3 214484700 214484867 -3552291 - L1ME4a LINE L1 -321 5800 5612 267 263 30 30 chr3 214485303 214485402 -3551756 - MIR SINE MIR -119 143 45 2196 93 3 0 chr3 214485402 214485702 -3551456 - AluSx SINE Alu -9 303 3 22 56 0 0 chr3 214485945 214485981 -3551177 + GC_rich Low_complexity Low_complexity 1 36 0 224 29 0 29 chr3 214485990 214486024 -3551134 + (CGGGG)n Simple_repeat Simple_repeat 1 33 0 2165 78 17 0 chr3 214486108 214486403 -3550755 - AluSx SINE Alu -12 300 1 2337 87 3 0 chr3 214488158 214488458 -3548700 + AluSx SINE Alu 1 301 -11 236 53 26 0 chr3 214488458 214488496 -3548662 + (TA)n Simple_repeat Simple_repeat 2 40 0 2073 172 38 36 chr3 214488501 214489047 -3548111 - MLT2A2 LTR ERVL 0 554 1 4654 207 64 99 chr3 214489224 214489582 -3547576 + L1MC1 LINE L1 3524 3893 -2437 2295 70 0 0 chr3 214489582 214489905 -3547253 + AluY SINE Alu 1 323 0 4654 207 64 99 chr3 214489905 214490491 -3546667 + L1MC1 LINE L1 3893 4498 -1832 2105 99 0 14 chr3 214490491 214490785 -3546373 - AluSx SINE Alu -10 302 13 4654 207 64 99 chr3 214490785 214491573 -3545585 + L1MC1 LINE L1 4498 5312 -1018 2005 92 0 59 chr3 214491573 214491879 -3545279 + AluSx SINE Alu 1 288 -24 4654 207 64 99 chr3 214491879 214492158 -3545000 + L1MC1 LINE L1 5312 5461 -869 1771 171 7 0 chr3 214492158 214492457 -3544701 + AluJb SINE Alu 3 303 -9 4654 207 64 99 chr3 214492457 214492579 -3544579 + L1MC1 LINE L1 5461 5586 -744 1195 65 0 0 chr3 214492579 214492734 -3544424 - AluY SINE Alu -7 304 150 3937 138 38 73 chr3 214492734 214493252 -3543906 + L1MC1 LINE L1 5576 6059 -274 2079 114 0 3 chr3 214493252 214493550 -3543608 - AluSx SINE Alu -15 297 1 3937 138 38 73 chr3 214493550 214493815 -3543343 + L1MC1 LINE L1 6059 6332 -1 32 0 0 0 chr3 214493819 214493851 -3543307 + AT_rich Low_complexity Low_complexity 1 32 0 2071 102 0 3 chr3 214494420 214494727 -3542431 + AluSx SINE Alu 1 306 0 497 264 35 17 chr3 214494734 214494908 -3542250 + MER53 DNA DNA 1 177 -12 270 0 0 0 chr3 214495850 214495880 -3541278 + (CA)n Simple_repeat Simple_repeat 1 30 0 2007 126 3 0 chr3 214495983 214496268 -3540890 - AluSx SINE Alu -26 286 1 356 306 100 58 chr3 214496657 214496948 -3540210 - L2 LINE L2 -3 3269 2967 720 264 92 45 chr3 214497397 214497849 -3539309 - L1ME LINE L1 -435 5686 5209 1618 295 124 21 chr3 214498089 214498941 -3538217 - L2 LINE L2 -1 3312 2340 1948 112 6 26 chr3 214498941 214499253 -3537905 + AluY SINE Alu 1 306 -5 1618 295 124 21 chr3 214499253 214499320 -3537838 - L2 LINE L2 -973 2340 2281 1489 145 67 28 chr3 214499351 214499634 -3537524 + AluJb SINE Alu 1 294 -18 2069 122 0 10 chr3 214499743 214500054 -3537104 - AluSg SINE Alu -2 308 1 25 0 0 0 chr3 214500084 214500109 -3537049 + AT_rich Low_complexity Low_complexity 1 25 0 239 284 74 0 chr3 214500186 214500267 -3536891 - L2 LINE L2 -17 3255 3169 498 312 116 9 chr3 214500951 214501166 -3535992 - MIR SINE MIR -24 238 1 2259 106 0 0 chr3 214501322 214501633 -3535525 + AluSx SINE Alu 1 311 -1 2053 110 0 29 chr3 214501660 214501969 -3535189 + AluSg1 SINE Alu 1 300 -9 282 280 16 144 chr3 214502029 214502279 -3534879 + LTR67 LTR ERVL 4 221 -336 2412 73 0 16 chr3 214503295 214503611 -3533547 + AluY SINE Alu 1 311 0 430 279 65 44 chr3 214503665 214503894 -3533264 + MLT1K LTR MaLR 344 577 -11 2227 93 10 0 chr3 214504330 214504632 -3532526 + AluSp SINE Alu 1 305 -8 3604 199 27 57 chr3 214504853 214505848 -3531310 + LTR5 LTR ERVK 5 969 0 338 239 35 62 chr3 214505872 214505985 -3531173 + MIR SINE MIR 126 235 -27 1832 109 102 0 chr3 214506545 214506829 -3530329 - AluSq SINE Alu 0 313 1 661 238 25 0 chr3 214507011 214507171 -3529987 - MIR3 SINE MIR -11 197 34 653 157 20 0 chr3 214509745 214509847 -3527311 - FLAM_A SINE Alu -18 124 21 864 173 37 47 chr3 214509934 214510125 -3527033 + MER53 DNA DNA 1 189 0 339 294 124 26 chr3 214510433 214510627 -3526531 + MIR SINE MIR 26 238 -24 212 287 180 0 chr3 214511109 214511231 -3525927 + MIR SINE MIR 10 149 -62 189 245 113 0 chr3 214511389 214511442 -3525716 + MIR SINE MIR 142 200 -62 595 245 28 37 chr3 214511443 214511569 -3525589 + L1MC1 LINE L1 6147 6272 -72 2238 95 3 0 chr3 214511569 214511865 -3525293 - AluSp SINE Alu -16 297 1 595 245 28 37 chr3 214511865 214511935 -3525223 + L1MC1 LINE L1 6272 6341 -3 2159 113 0 7 chr3 214512843 214513145 -3524013 - AluSx SINE Alu -12 300 1 1804 110 36 39 chr3 214513145 214513308 -3523850 - MER4A-int LTR ERV1 -4472 2126 1964 2073 125 3 10 chr3 214513308 214513620 -3523538 - AluSx SINE Alu -2 310 1 1804 110 36 39 chr3 214513620 214513820 -3523338 - MER4A-int LTR ERV1 -4634 1964 1764 1123 143 15 82 chr3 214513836 214513892 -3523266 - MER4A-int LTR ERV1 -5592 1166 1108 2336 89 0 3 chr3 214513892 214514206 -3522952 + AluSp SINE Alu 1 313 0 1123 143 15 82 chr3 214514206 214514492 -3522666 - MER4A-int LTR ERV1 -5650 1108 790 * 1449 93 13 42 chr3 214514489 214514725 -3522433 - MER4A-int LTR ERV1 -6341 417 189 * 1482 240 61 11 chr3 214514724 214515086 -3522072 - MER4A-int LTR ERV1 -4107 2224 1845 2481 114 104 25 chr3 214515248 214515801 -3521357 - MER4A-int LTR ERV1 -5912 686 1 1441 126 62 83 chr3 214515804 214516161 -3520997 - MER4A LTR ERV1 0 664 257 591 152 0 10 chr3 214516157 214516256 -3520902 - MER4A LTR ERV1 -566 98 1 * 571 177 26 9 chr3 214516684 214516797 -3520361 + MER50 LTR ERV1 459 573 -161 1808 152 3 41 chr3 214516797 214517112 -3520046 - AluSx SINE Alu -9 303 1 673 128 0 0 chr3 214517121 214517215 -3519943 - AluSp/q SINE Alu -17 296 203 724 148 243 30 chr3 214517260 214517462 -3519696 + LTR10A LTR ERV1 1 245 -364 868 97 0 0 chr3 214517462 214517575 -3519583 - AluSq/x SINE Alu -200 113 1 549 262 18 48 chr3 214517827 214517995 -3519163 - L1ME3 LINE L1 -1 6161 5999 716 164 23 0 chr3 214518039 214518167 -3518991 - AluJb SINE Alu 0 312 182 1402 189 17 10 chr3 214518168 214518470 -3518688 - L1ME3 LINE L1 -179 5983 5680 239 222 19 0 chr3 214518477 214518531 -3518627 + Tigger5 DNA MER2_type 1 55 -2268 * 478 209 38 0 chr3 214518523 214518628 -3518530 + Tigger5 DNA MER2_type 2215 2323 0 296 353 116 50 chr3 214518642 214518883 -3518275 + LTR16C LTR ERVL 181 437 -54 248 327 50 65 chr3 214519008 214519268 -3517890 - L2 LINE L2 -435 2879 2624 273 225 71 41 chr3 214519701 214519870 -3517288 + (CAGGG)n Simple_repeat Simple_repeat 2 175 0 223 260 57 40 chr3 214520588 214520765 -3516393 + (CAGGG)n Simple_repeat Simple_repeat 1 180 0 297 234 72 30 chr3 214520830 214520997 -3516161 + (CAGGG)n Simple_repeat Simple_repeat 2 175 0 1123 83 30 6 chr3 214521447 214521616 -3515542 + AluSg/x SINE Alu 126 298 -12 232 270 20 0 chr3 214521711 214521811 -3515347 + C-rich Low_complexity Low_complexity 1 102 0 2387 82 0 19 chr3 214522047 214522363 -3514795 + AluSx SINE Alu 3 312 0 448 285 66 40 chr3 214522414 214522642 -3514516 + MLT1K LTR MaLR 344 577 -11 2374 90 10 0 chr3 214523078 214523379 -3513779 + AluSp SINE Alu 1 304 -9 3676 202 32 60 chr3 214523602 214524595 -3512563 + LTR5 LTR ERVK 5 969 0 328 240 39 48 chr3 214524628 214524732 -3512426 + MIR SINE MIR 133 235 -27 1965 106 102 0 chr3 214525292 214525576 -3511582 - AluSq SINE Alu 0 313 1 638 238 25 0 chr3 214525758 214525918 -3511240 - MIR3 SINE MIR -11 197 34 622 126 21 0 chr3 214528841 214528936 -3508222 - FLAM_A SINE Alu -25 117 21 811 142 53 58 chr3 214529023 214529213 -3507945 + MER53 DNA DNA 1 189 0 286 289 109 23 chr3 214529521 214529649 -3507509 + MIR SINE MIR 26 164 -98 205 286 48 0 chr3 214530428 214530491 -3506667 + MIR SINE MIR 84 149 -113 186 245 113 0 chr3 214530649 214530702 -3506456 + MIR SINE MIR 142 200 -62 494 204 10 0 chr3 214530703 214530806 -3506352 + L1MC1 LINE L1 6147 6250 -83 2354 95 3 0 chr3 214530829 214531123 -3506035 - AluSp SINE Alu -18 295 1 992 125 0 19 chr3 214531621 214531781 -3505377 + AluSg/x SINE Alu 152 308 -2 544 267 97 11 chr3 214532776 214532952 -3504206 - MIR SINE MIR -66 196 6 1577 189 144 21 chr3 214533295 214533677 -3503481 - LTR38B LTR ERV1 -54 556 128 560 172 31 55 chr3 214533732 214533895 -3503263 - LTR38B LTR ERV1 -451 159 1 291 183 14 14 chr3 214535704 214535775 -3501383 + MER5A DNA MER1_type 2 72 -117 647 177 23 8 chr3 214535806 214535936 -3501222 - FLAM_C SINE Alu 0 133 2 2472 84 0 0 chr3 214536420 214536716 -3500442 - AluSx SINE Alu -16 296 1 711 296 10 29 chr3 214536801 214537106 -3500052 + L1ME LINE L1 5503 5759 -362 2192 95 32 3 chr3 214537110 214537395 -3499763 + AluSq SINE Alu 1 293 -20 320 0 0 82 chr3 214537433 214537482 -3499676 + (CA)n Simple_repeat Simple_repeat 2 46 0 2202 110 3 13 chr3 214537983 214538292 -3498866 - AluY SINE Alu -5 306 1 1035 101 45 25 chr3 214538294 214538492 -3498666 - MER4A-int LTR ERV1 -4633 1965 1764 * 1301 124 177 92 chr3 214538473 214538564 -3498594 - MER4A-int LTR ERV1 -5590 1168 1086 2430 90 0 3 chr3 214538564 214538874 -3498284 + AluSp SINE Alu 1 309 -4 1301 124 177 92 chr3 214538874 214539168 -3497990 - MER4A-int LTR ERV1 -5672 1086 790 * 1453 127 12 8 chr3 214539165 214539409 -3497749 - MER4A-int LTR ERV1 -6341 417 173 1452 240 61 11 chr3 214539404 214539766 -3497392 - MER4A-int LTR ERV1 -4107 2224 1845 * 2405 170 14 68 chr3 214539826 214540477 -3496681 - MER4A-int LTR ERV1 -5758 840 1 1430 122 62 84 chr3 214540480 214540833 -3496325 - MER4A LTR ERV1 0 664 261 598 141 0 10 chr3 214540833 214540932 -3496226 - MER4A LTR ERV1 -566 98 1 567 177 26 9 chr3 214541333 214541446 -3495712 + MER50 LTR ERV1 459 573 -161 1969 146 3 41 chr3 214541446 214541761 -3495397 - AluSx SINE Alu -9 303 1 635 128 0 0 chr3 214541770 214541864 -3495294 - AluSp/q SINE Alu -17 296 203 721 153 243 30 chr3 214541909 214542111 -3495047 + LTR10A LTR ERV1 1 245 -364 925 97 0 0 chr3 214542111 214542224 -3494934 - AluSq/x SINE Alu -200 113 1 538 262 18 48 chr3 214542476 214542644 -3494514 - L1ME3 LINE L1 -1 6161 5999 653 148 26 0 chr3 214542677 214542792 -3494366 - AluJb SINE Alu -13 299 182 1414 189 17 10 chr3 214542793 214543095 -3494063 - L1ME3 LINE L1 -179 5983 5680 243 222 19 0 chr3 214543102 214543156 -3494002 + Tigger5 DNA MER2_type 1 55 -2268 * 473 209 38 0 chr3 214543148 214543253 -3493905 + Tigger5 DNA MER2_type 2215 2323 0 292 348 15 22 chr3 214543373 214543508 -3493650 + LTR16C LTR ERVL 304 437 -54 281 295 39 51 chr3 214543633 214543789 -3493369 - L2 LINE L2 -435 2879 2726 203 234 70 53 chr3 214544024 214544195 -3492963 + (CAGGG)n Simple_repeat Simple_repeat 2 175 0 261 229 44 66 chr3 214544297 214544480 -3492678 + (CAGGG)n Simple_repeat Simple_repeat 2 180 0 248 231 71 41 chr3 214544529 214544698 -3492460 + (CAGGG)n Simple_repeat Simple_repeat 2 175 0 264 225 71 41 chr3 214544821 214544990 -3492168 + (CAGGG)n Simple_repeat Simple_repeat 2 175 0 301 233 70 29 chr3 214545030 214545202 -3491956 + (CAGGG)n Simple_repeat Simple_repeat 2 180 0 2263 98 0 7 chr3 214545365 214545671 -3491487 + AluSg SINE Alu 1 304 -6 533 274 103 11 chr3 214548313 214548488 -3488670 - MIR SINE MIR -66 196 6 340 272 112 14 chr3 214548698 214548927 -3488231 + MER41E LTR ERV1 54 427 -208 671 180 7 22 chr3 214548928 214549067 -3488091 - FLAM_C SINE Alu -5 138 2 834 208 48 0 chr3 214549340 214549508 -3487650 + MER58 DNA MER1_type 1 176 -2244 215 250 0 0 chr3 214550101 214550145 -3487013 - L3 LINE CR1 -10 1567 1524 1220 146 5 0 chr3 214550407 214550599 -3486559 + AluJo SINE Alu 120 312 0 739 143 0 0 chr3 214550607 214550733 -3486425 + L1MC5 LINE L1 4903 5028 -1118 2245 126 0 3 chr3 214550733 214551042 -3486116 + AluSx SINE Alu 1 308 -4 2363 195 12 105 chr3 214551044 214551230 -3485928 + L1MC5 LINE L1 5307 5509 -2533 2183 128 0 0 chr3 214551230 214551526 -3485632 + AluSc SINE Alu 1 296 -13 2363 195 12 105 chr3 214551526 214552098 -3485060 + L1MC5 LINE L1 5509 5994 -2048 * 2683 175 10 4 chr3 214551674 214552176 -3484982 + L1MB7 LINE L1 5570 6074 -110 1013 104 0 0 chr3 214552176 214552301 -3484857 + AluSq/x SINE Alu 1 125 -188 483 199 0 84 chr3 214552313 214552444 -3484714 + L1MB7 LINE L1 6058 6177 -7 252 310 26 0 chr3 214552448 214552564 -3484594 + GA-rich Low_complexity Low_complexity 2 120 0 485 276 49 57 chr3 214553283 214553529 -3483629 - MER112 DNA MER1_type -16 244 1 317 217 24 0 chr3 214553682 214553765 -3483393 + L2 LINE L2 2889 2973 -299 662 234 130 110 chr3 214553830 214554421 -3482737 + L1MC5 LINE L1 6989 7591 -370 1766 175 6 31 chr3 214554436 214554756 -3482402 - AluJo SINE Alu 0 312 1 326 207 33 66 chr3 214554791 214554858 -3482300 + L1MC5 LINE L1 7585 7648 -313 180 0 0 0 chr3 214554865 214554885 -3482273 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2203 92 0 11 chr3 214554885 214555160 -3481998 - AluSx SINE Alu -21 291 18 326 207 33 66 chr3 214555160 214555213 -3481945 + L1MC5 LINE L1 7648 7701 -260 261 242 21 21 chr3 214555227 214555322 -3481836 + L1MC5 LINE L1 7821 7915 -46 2325 109 3 0 chr3 214555339 214555641 -3481517 - AluSx SINE Alu -9 303 1 455 257 80 86 chr3 214555649 214555999 -3481159 + MER7A DNA MER2_type 1 346 0 2182 108 3 14 chr3 214556044 214556340 -3480818 + AluSx SINE Alu 1 293 -19 194 0 39 0 chr3 214556340 214556366 -3480792 + (GA)n Simple_repeat Simple_repeat 2 28 0 2246 127 3 0 chr3 214557182 214557489 -3479669 - AluSx SINE Alu -4 308 1 1739 201 47 23 chr3 214557495 214557733 -3479425 - L1MC/D LINE L1 -535 5707 5451 2177 148 0 0 chr3 214557733 214558038 -3479120 - AluSx SINE Alu -7 305 1 1739 201 47 23 chr3 214558038 214558242 -3478916 - L1MC/D LINE L1 -791 5451 5254 1017 152 178 17 chr3 214558256 214558486 -3478672 + Tigger3b DNA MER2_type 2 268 -963 371 125 62 0 chr3 214558488 214558552 -3478606 + Tigger3b DNA MER2_type 201 268 -963 371 125 62 0 chr3 214558554 214558618 -3478540 + Tigger3b DNA MER2_type 201 268 -963 371 125 62 0 chr3 214558620 214558684 -3478474 + Tigger3b DNA MER2_type 201 268 -963 358 141 62 0 chr3 214558686 214558750 -3478408 + Tigger3b DNA MER2_type 201 268 -963 368 125 62 0 chr3 214558752 214558816 -3478342 + Tigger3b DNA MER2_type 201 268 -963 2087 130 71 6 chr3 214558818 214559222 -3477936 + Tigger3b DNA MER2_type 201 765 -467 482 114 13 0 chr3 214559339 214559418 -3477740 - MADE1 DNA Mariner 0 80 1 952 340 131 14 chr3 214560328 214561325 -3475833 - L2 LINE L2 -910 2404 1286 2338 102 0 3 chr3 214561325 214561628 -3475530 + AluSx SINE Alu 1 302 -10 952 340 131 14 chr3 214561628 214561641 -3475517 - L2 LINE L2 -2028 1286 1276 1538 110 4 0 chr3 214562198 214562443 -3474715 - L1PA7 LINE L1 -971 5175 4930 6653 51 14 18 chr3 214562444 214562939 -3474219 + L1PA7 LINE L1 5190 5682 -472 2316 92 3 3 chr3 214562939 214563234 -3473924 - AluSc SINE Alu -14 295 1 6653 51 14 18 chr3 214563234 214563704 -3473454 + L1PA7 LINE L1 5682 6152 -2 240 311 97 61 chr3 214564822 214565018 -3472140 + L2 LINE L2 2910 3112 -160 2183 110 3 7 chr3 214565178 214565479 -3471679 + AluSx SINE Alu 1 300 -12 196 227 23 0 chr3 214566237 214566281 -3470877 + L2 LINE L2 3269 3313 0 306 258 72 0 chr3 214566732 214566829 -3470329 + MER3 DNA MER1_type 1 104 -105 280 171 114 0 chr3 214567458 214567528 -3469630 + MER5A DNA MER1_type 47 124 -65 520 271 44 26 chr3 214567854 214567877 -3469281 - L1MC5 LINE L1 -772 7189 7168 1684 88 14 5 chr3 214567877 214568092 -3469066 - AluSq SINE Alu -12 301 85 520 271 44 26 chr3 214568092 214568297 -3468861 - L1MC5 LINE L1 -793 7168 6957 226 245 0 0 chr3 214568341 214568390 -3468768 - L1MC3 LINE L1 -1049 6736 6688 2019 105 8 0 chr3 214568496 214568763 -3468395 - AluSq SINE Alu -16 297 29 709 259 82 80 chr3 214569662 214570052 -3467106 - L1MC3 LINE L1 -1981 5827 5437 363 305 93 2 chr3 214570139 214570340 -3466818 - L1ME2 LINE L1 -137 6029 5802 23 0 0 0 chr3 214570417 214570440 -3466718 + AT_rich Low_complexity Low_complexity 1 23 0 1792 162 39 0 chr3 214570475 214570759 -3466399 + AluJb SINE Alu 9 303 -9 499 138 0 0 chr3 214570824 214570904 -3466254 - MADE1 DNA Mariner 0 80 1 1506 134 25 0 chr3 214571026 214571264 -3465894 - MER1B DNA MER1_type 0 339 96 233 236 64 83 chr3 214571126 214571283 -3465875 + Charlie3 DNA MER1_type 162 315 -2395 * 231 162 0 0 chr3 214571689 214571726 -3465432 - MER1B DNA MER1_type -168 129 133 240 135 0 0 chr3 214572064 214572101 -3465057 - MER1B DNA MER1_type -168 129 133 729 193 18 0 chr3 214572128 214572286 -3464872 - MER1B DNA MER1_type -168 129 3 401 282 42 21 chr3 214773234 214773376 -3263782 + L1MEd LINE L1 945 1089 -5030 1481 180 70 6 chr3 214773419 214773746 -3263412 - MLT1A1 LTR MaLR -11 354 7 396 214 10 10 chr3 214773776 214773874 -3263284 + MLT1B LTR MaLR 76 173 -217 384 234 0 0 chr3 214773887 214773981 -3263177 + (TG)n Simple_repeat Simple_repeat 1 94 0 548 226 170 0 chr3 214773981 214774140 -3263018 + MLT1B LTR MaLR 192 377 -13 299 267 38 23 chr3 214774150 214774281 -3262877 + L1MEd LINE L1 1075 1207 -4912 1847 206 15 10 chr3 214774519 214774926 -3262232 + L1MA4 LINE L1 5717 6125 -175 300 228 8 57 chr3 214775151 214775274 -3261884 + (CGTG)n Simple_repeat Simple_repeat 1 117 0 209 195 0 0 chr3 214776401 214776442 -3260716 + GA-rich Low_complexity Low_complexity 2 42 0 208 50 0 50 chr3 214776527 214776567 -3260591 + (CCCCCA)n Simple_repeat Simple_repeat 4 41 0 201 276 68 0 chr3 214777773 214777936 -3259222 + (CCCCAG)n Simple_repeat Simple_repeat 3 176 0 240 308 35 0 chr3 214777984 214778156 -3259002 + (CCCCAG)n Simple_repeat Simple_repeat 1 178 0 201 301 129 0 chr3 214778159 214778252 -3258906 + MIR3 SINE MIR 97 201 -7 345 293 54 0 chr3 214778536 214778683 -3258475 - L1ME4a LINE L1 -6 6115 5961 727 279 51 25 chr3 214778857 214779094 -3258064 - MIR SINE MIR 0 262 20 40 0 0 0 chr3 214779301 214779341 -3257817 + AT_rich Low_complexity Low_complexity 1 40 0 628 244 25 0 chr3 214779858 214780018 -3257140 - MIR3 SINE MIR -11 197 34 622 126 21 0 chr3 214782648 214782743 -3254415 - FLAM_A SINE Alu -25 117 21 817 143 53 53 chr3 214782830 214783019 -3254139 + MER53 DNA DNA 1 189 0 316 294 124 26 chr3 214783327 214783521 -3253637 + MIR SINE MIR 26 238 -24 205 286 48 0 chr3 214784061 214784124 -3253034 + MIR SINE MIR 84 149 -113 186 245 113 0 chr3 214784282 214784335 -3252823 + MIR SINE MIR 142 200 -62 586 227 28 40 chr3 214784336 214784462 -3252696 + L1MC1 LINE L1 6147 6272 -61 2265 103 7 0 chr3 214784462 214784754 -3252404 - AluSp SINE Alu -19 294 1 586 227 28 40 chr3 214784754 214784803 -3252355 + L1MC1 LINE L1 6272 6320 -13 2294 88 0 7 chr3 214785746 214786040 -3251118 - AluSx SINE Alu -20 292 1 469 263 105 19 chr3 214786124 214786333 -3250825 + MIR SINE MIR 22 248 -14 199 194 0 0 chr3 214786834 214786870 -3250288 - L3 LINE CR1 -4 1573 1538 1048 105 0 0 chr3 214786874 214787007 -3250151 + AluSq/x SINE Alu 1 133 -179 2174 139 3 0 chr3 214787009 214787312 -3249846 + AluSx SINE Alu 1 304 -8 240 231 22 110 chr3 214787312 214787403 -3249755 + MIR SINE MIR 40 122 -86 197 284 60 0 chr3 214787482 214787549 -3249609 + MIR SINE MIR 55 125 -83 372 316 53 8 chr3 214788284 214788417 -3248741 - L2 LINE L2 -1 3312 3174 1752 143 9 22 chr3 214788417 214788767 -3248391 - MER4A LTR ERV1 0 664 261 506 153 20 20 chr3 214788767 214788865 -3248293 - MER4A LTR ERV1 -566 98 1 8750 101 70 13 chr3 214788872 214790303 -3246855 - MER4A-int LTR ERV1 -2 6596 5085 1135 151 0 0 chr3 214790309 214790468 -3246690 - AluSg/x SINE Alu -13 297 139 777 130 0 0 chr3 214790487 214790610 -3246548 + L1PA16 LINE L1 6036 6158 -8 38 0 0 0 chr3 214790610 214790648 -3246510 + AT_rich Low_complexity Low_complexity 1 38 0 931 152 40 0 chr3 214790666 214790817 -3246341 + AluSg/x SINE Alu 156 312 0 282 94 0 38 chr3 214790818 214790871 -3246287 + L1MA7 LINE L1 6128 6178 -113 3440 175 29 26 chr3 214790921 214791646 -3245512 - LTR8A LTR ERV1 0 727 1 1946 134 4 34 chr3 214791669 214792018 -3245140 - MER4A LTR ERV1 0 664 263 584 122 0 20 chr3 214792020 214792118 -3245040 - MER4A LTR ERV1 -568 96 1 5296 94 46 36 chr3 214792127 214793042 -3244116 - MER4A-int LTR ERV1 -1838 4760 3837 * 9264 137 146 117 chr3 214793041 214793422 -3243736 - MER4A-int LTR ERV1 -2917 3681 3312 2457 69 0 0 chr3 214793422 214793710 -3243448 + AluY SINE Alu 1 288 -23 9264 137 146 117 chr3 214793710 214795334 -3241824 - MER4A-int LTR ERV1 -3286 3312 1736 2142 127 0 0 chr3 214795334 214795617 -3241541 + AluSq SINE Alu 1 283 -30 9264 137 146 117 chr3 214795617 214796031 -3241127 - MER4A-int LTR ERV1 -4862 1736 1335 207 69 0 0 chr3 214796031 214796060 -3241098 + (CA)n Simple_repeat Simple_repeat 2 30 0 9264 137 146 117 chr3 214796060 214796438 -3240720 - MER4A-int LTR ERV1 -5263 1335 969 2437 86 0 10 chr3 214796438 214796740 -3240418 - AluY SINE Alu -12 299 1 9264 137 146 117 chr3 214796740 214797433 -3239725 - MER4A-int LTR ERV1 -5629 969 1 1763 142 3 38 chr3 214797436 214797794 -3239364 - MER4A LTR ERV1 0 664 261 649 111 0 10 chr3 214797794 214797893 -3239265 - MER4A LTR ERV1 -566 98 1 1808 204 9 3 chr3 214798118 214798147 -3239011 + MLT2B1 LTR ERVL 1 28 -492 4378 98 22 0 chr3 214798147 214798768 -3238390 + MER41B LTR ERV1 1 635 0 1808 204 9 3 chr3 214798768 214799072 -3238086 + MLT2B1 LTR ERVL 28 336 -184 233 29 29 0 chr3 214799150 214799184 -3237974 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2182 109 4 0 chr3 214799186 214799462 -3237696 - AluSx SINE Alu -33 279 3 247 294 163 58 chr3 214799554 214799830 -3237328 - MLT1K LTR MaLR -187 401 97 414 57 0 0 chr3 214799903 214799956 -3237202 + (TCTCCC)n Simple_repeat Simple_repeat 1 53 0 217 190 35 52 chr3 214800026 214800142 -3237016 + (CGGG)n Simple_repeat Simple_repeat 1 114 0 240 202 31 70 chr3 214800183 214800312 -3236846 + C-rich Low_complexity Low_complexity 6 129 0 182 130 28 65 chr3 214800329 214800437 -3236721 + (CCCCG)n Simple_repeat Simple_repeat 1 104 0 243 221 26 35 chr3 214800441 214800554 -3236604 + C-rich Low_complexity Low_complexity 3 114 0 10910 58 18 12 chr3 214800913 214802300 -3234858 + SVA Other Other 1 1396 0 216 0 0 0 chr3 214802327 214802351 -3234807 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 423 0 0 0 chr3 214802948 214802995 -3234163 + (CA)n Simple_repeat Simple_repeat 2 48 0 245 247 13 26 chr3 214804011 214804088 -3233070 - MIR SINE MIR -113 95 20 2314 91 3 3 chr3 214804623 214804919 -3232239 - AluSc SINE Alu -13 296 1 262 327 88 9 chr3 214806445 214806558 -3230600 + L2 LINE L2 3191 3312 -1 2130 94 11 4 chr3 214807002 214807277 -3229881 - AluSg SINE Alu -33 277 1 1245 117 0 0 chr3 214807283 214807446 -3229712 - AluSg/x SINE Alu -16 296 134 2402 94 3 0 chr3 214807446 214807743 -3229415 - AluSg SINE Alu -12 298 1 1689 156 101 32 chr3 214807756 214808103 -3229055 + MER93b LTR ERV1 1 371 -2 240 258 0 56 chr3 214808627 214808716 -3228442 + L3 LINE CR1 647 730 -847 405 328 62 10 chr3 214808793 214808985 -3228173 + MIR SINE MIR 20 221 -41 433 216 181 0 chr3 214809530 214809646 -3227512 - Charlie4 DNA MER1_type -7 1954 1818 214 315 15 11 chr3 214809713 214809805 -3227353 - MIR SINE MIR -113 95 20 257 361 119 16 chr3 214810356 214810445 -3226713 + MIR SINE MIR 12 90 -172 2374 93 0 0 chr3 214810445 214810745 -3226413 - AluSx SINE Alu -12 300 1 257 361 119 16 chr3 214810745 214810849 -3226309 + MIR SINE MIR 90 225 -37 4674 48 16 16 chr3 214810919 214811956 -3225202 + MER11A LTR ERVK 1 1266 0 279 274 57 19 chr3 214812137 214812294 -3224864 + L2 LINE L2 1454 1616 -1698 1894 313 74 33 chr3 214812429 214813591 -3223567 + L2 LINE L2 2063 3274 -39 360 0 0 0 chr3 214813595 214813635 -3223523 + (TG)n Simple_repeat Simple_repeat 2 41 0 315 156 19 29 chr3 214813695 214813767 -3223391 - MIR SINE MIR -129 79 5 254 317 209 15 chr3 214813973 214814241 -3222917 - L2 LINE L2 0 3313 2994 2206 72 10 14 chr3 214814599 214814892 -3222266 + AluY SINE Alu 20 311 0 235 179 90 0 chr3 214814929 214814996 -3222162 + L1ME4a LINE L1 5815 5887 -1921 2294 89 0 10 chr3 214815016 214815308 -3221850 + AluSq SINE Alu 9 297 -16 338 266 81 40 chr3 214815330 214815503 -3221655 + L1ME4a LINE L1 5941 6120 -1 451 309 157 27 chr3 214816031 214816407 -3220751 - L2 LINE L2 0 3313 2889 195 246 35 0 chr3 214816884 214816941 -3220217 - MIR SINE MIR -117 145 87 261 57 0 0 chr3 214817233 214817268 -3219890 + (CA)n Simple_repeat Simple_repeat 1 35 0 314 265 166 0 chr3 214817643 214817794 -3219364 - MIR SINE MIR -4 258 83 1445 78 0 6 chr3 214818478 214818657 -3218501 - AluSg/x SINE Alu -11 298 121 2219 124 3 6 chr3 214818657 214818971 -3218187 - AluSq SINE Alu 0 313 1 22 35 0 0 chr3 214818971 214819000 -3218158 + AT_rich Low_complexity Low_complexity 1 29 0 2100 93 18 81 chr3 214819203 214819536 -3217622 - AluSp SINE Alu 0 313 2 257 260 0 52 chr3 214819846 214819923 -3217235 + MIR3 SINE MIR 109 181 -27 234 184 0 0 chr3 214820800 214820838 -3216320 - L1MC1 LINE L1 -262 6071 6034 227 200 0 0 chr3 214820912 214820952 -3216206 - L1MC1 LINE L1 -260 6073 6034 232 184 0 0 chr3 214821409 214821447 -3215711 - L1MC1 LINE L1 -262 6071 6034 235 200 0 0 chr3 214821483 214821523 -3215635 - L1MC1 LINE L1 -260 6073 6034 235 200 0 0 chr3 214821559 214821599 -3215559 - L1MC1 LINE L1 -260 6073 6034 235 184 0 0 chr3 214822506 214822544 -3214614 - L1MC1 LINE L1 -260 6073 6036 240 179 0 0 chr3 214822544 214822583 -3214575 - L1MC1 LINE L1 -260 6073 6035 226 205 0 0 chr3 214823001 214823040 -3214118 - L1MC1 LINE L1 -260 6073 6035 246 179 0 0 chr3 214823116 214823155 -3214003 - L1MC1 LINE L1 -260 6073 6035 226 200 0 0 chr3 214823333 214823373 -3213785 - L1MC1 LINE L1 -260 6073 6034 * 243 179 0 0 chr3 214823371 214823410 -3213748 - L1MC1 LINE L1 -260 6073 6035 226 205 0 0 chr3 214823447 214823486 -3213672 - L1MC1 LINE L1 -260 6073 6035 238 184 0 0 chr3 214823829 214823867 -3213291 - L1MC1 LINE L1 -262 6071 6034 246 179 0 0 chr3 214823980 214824019 -3213139 - L1MC1 LINE L1 -260 6073 6035 243 179 0 0 chr3 214824235 214824274 -3212884 - L1MC1 LINE L1 -260 6073 6035 240 179 0 0 chr3 214824528 214824567 -3212591 - L1MC1 LINE L1 -260 6073 6035 227 167 0 0 chr3 214824568 214824604 -3212554 - L1MC1 LINE L1 -262 6071 6036 240 179 0 0 chr3 214824604 214824643 -3212515 - L1MC1 LINE L1 -260 6073 6035 231 179 0 0 chr3 214824794 214824833 -3212325 - L1MC1 LINE L1 -260 6073 6035 238 184 0 0 chr3 214824911 214824949 -3212209 - L1MC1 LINE L1 -262 6071 6034 226 205 0 0 chr3 214825061 214825100 -3212058 - L1MC1 LINE L1 -260 6073 6035 259 175 0 0 chr3 214825175 214825215 -3211943 - L1MC1 LINE L1 -260 6073 6034 242 200 0 0 chr3 214825327 214825367 -3211791 - L1MC1 LINE L1 -260 6073 6034 235 204 93 19 chr3 214825403 214825457 -3211701 - L1MC1 LINE L1 -260 6073 6016 238 184 0 0 chr3 214825823 214825861 -3211297 - L1MC1 LINE L1 -262 6071 6034 242 200 0 0 chr3 214825897 214825937 -3211221 - L1MC1 LINE L1 -260 6073 6034 226 205 0 0 chr3 214825973 214826012 -3211146 - L1MC1 LINE L1 -260 6073 6035 226 205 0 0 chr3 214826690 214826729 -3210429 - L1MC1 LINE L1 -260 6073 6035 246 179 0 0 chr3 214826842 214826881 -3210277 - L1MC1 LINE L1 -260 6073 6035 235 184 0 0 chr3 214827176 214827214 -3209944 - L1MC1 LINE L1 -260 6073 6036 240 179 0 0 chr3 214827214 214827253 -3209905 - L1MC1 LINE L1 -260 6073 6035 26 30 0 0 chr3 214827492 214827525 -3209633 + GC_rich Low_complexity Low_complexity 1 33 0 27 49 0 0 chr3 214827596 214827637 -3209521 + GC_rich Low_complexity Low_complexity 1 41 0 2184 93 0 31 chr3 214828427 214828708 -3208450 + AluSx SINE Alu 1 272 -40 225 0 0 0 chr3 214828708 214828733 -3208425 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2184 93 0 31 chr3 214828733 214828773 -3208385 + AluSx SINE Alu 272 312 0 815 292 73 0 chr3 214828834 214829053 -3208105 - MIR SINE MIR 0 262 28 433 266 80 22 chr3 214829906 214830132 -3207026 - LTR16C LTR ERVL 0 491 253 209 253 218 0 chr3 214830313 214830400 -3206758 - MIR SINE MIR -111 151 46 1798 158 45 32 chr3 214831044 214831423 -3205735 - L1MB8 LINE L1 -5 6173 5790 2420 165 51 109 chr3 214831438 214831917 -3205241 - L1MB8 LINE L1 -1288 4858 4353 2097 107 3 22 chr3 214831917 214832235 -3204923 - AluSx SINE Alu 0 312 1 2420 165 51 109 chr3 214832235 214832311 -3204847 - L1MB8 LINE L1 -1793 4353 4274 1908 129 0 0 chr3 214832311 214832597 -3204561 - AluSx SINE Alu -17 295 10 2420 165 51 109 chr3 214832597 214832762 -3204396 - L1MB8 LINE L1 -1872 4274 4179 256 135 0 0 chr3 214833203 214833240 -3203918 - tRNA-Cys-TGC tRNA tRNA -38 37 1 24 0 0 0 chr3 214833363 214833387 -3203771 + AT_rich Low_complexity Low_complexity 1 24 0 471 239 109 91 chr3 214834015 214834204 -3202954 + L1ME3A LINE L1 5579 5778 -392 2193 102 0 0 chr3 214834204 214834498 -3202660 + AluSx SINE Alu 1 294 -18 471 239 109 91 chr3 214834498 214834638 -3202520 + L1ME3A LINE L1 5778 5914 -256 1206 158 45 41 chr3 214834805 214835051 -3202107 - MLT1D LTR MaLR 0 505 259 321 303 49 0 chr3 214835180 214835302 -3201856 - L1ME LINE L1 -410 5711 5584 1822 189 68 62 chr3 214836721 214837219 -3199939 + MLT1D LTR MaLR 1 501 -4 1168 237 123 17 chr3 214837229 214837579 -3199579 - L1MC1 LINE L1 -1867 5941 5555 599 325 26 10 chr3 214838569 214838763 -3198395 - L3 LINE CR1 -27 1550 1354 942 62 8 8 chr3 214839306 214839434 -3197724 - AluY SINE Alu -183 128 1 362 247 90 42 chr3 214839666 214839832 -3197326 - MER104 DNA Tc2 -3 177 4 2169 98 0 3 chr3 214840084 214840381 -3196777 + AluSx SINE Alu 2 297 -15 225 200 0 0 chr3 214840741 214840786 -3196372 + T-rich Low_complexity Low_complexity 1 45 0 265 357 8 54 chr3 214840989 214841118 -3196040 - L2 LINE L2 -17 3255 3133 290 311 47 28 chr3 214841844 214841950 -3195208 - MIR SINE MIR -67 141 34 1946 81 0 8 chr3 214842117 214842377 -3194781 + AluSg SINE Alu 53 310 0 25 0 0 0 chr3 214843213 214843238 -3193920 + GC_rich Low_complexity Low_complexity 1 25 0 1319 76 0 68 chr3 214843994 214844243 -3192915 + AluSq SINE Alu 82 313 0 228 35 0 0 chr3 214844628 214844657 -3192501 + (TC)n Simple_repeat Simple_repeat 2 30 0 1779 161 10 7 chr3 214845383 214845688 -3191470 + AluJo SINE Alu 1 306 -6 254 321 71 36 chr3 214846077 214846217 -3190941 - L2 LINE L2 -76 3196 3052 2261 81 0 0 chr3 214846315 214846611 -3190547 + AluSx SINE Alu 1 296 -16 258 290 0 50 chr3 214847745 214847845 -3189313 - L1MC5 LINE L1 -171 7790 7696 189 0 0 0 chr3 214849170 214849191 -3187967 + (TTTTTA)n Simple_repeat Simple_repeat 4 24 0 2273 75 0 7 chr3 214849205 214849500 -3187658 - AluSq SINE Alu -15 298 6 793 129 0 50 chr3 214850086 214850225 -3186933 + AluSg/x SINE Alu 165 296 -16 528 195 49 8 chr3 214851235 214851358 -3185800 + MLT1A1 LTR MaLR 7 134 -231 1862 69 4 4 chr3 214851476 214851723 -3185435 - AluY SINE Alu -64 247 1 239 337 22 11 chr3 214851970 214852062 -3185096 + MIR SINE MIR 44 136 -72 2440 187 19 164 chr3 214852992 214853593 -3183565 - L1M4 LINE L1 -1716 4430 3923 508 179 11 0 chr3 214853593 214853688 -3183470 + AluSg/x SINE Alu 203 298 -12 2440 187 19 164 chr3 214853688 214853993 -3183165 - L1M4 LINE L1 -2223 3923 3575 245 250 0 0 chr3 214854531 214854587 -3182571 - MIR SINE MIR -71 137 82 1221 167 4 12 chr3 214854875 214855115 -3182043 - L1PA13 LINE L1 0 6163 5926 324 58 35 58 chr3 214855613 214855700 -3181458 + (CCCCCA)n Simple_repeat Simple_repeat 6 90 0 181 110 29 88 chr3 214855751 214855887 -3181271 + C-rich Low_complexity Low_complexity 5 132 0 328 160 40 0 chr3 214855958 214856033 -3181125 + CT-rich Low_complexity Low_complexity 1 78 0 1629 171 30 3 chr3 214856044 214856348 -3180810 - AluJb SINE Alu 0 312 1 281 219 123 0 chr3 214856441 214856514 -3180644 - MIR SINE MIR -10 252 171 367 345 31 16 chr3 214856519 214856713 -3180445 - L2 LINE L2 -1365 1949 1753 835 144 0 4 chr3 214856713 214856942 -3180216 + AluSx SINE Alu 2 311 -1 2296 59 7 0 chr3 214857140 214857444 -3179714 + AluYb8 SINE Alu 1 306 -12 1093 192 0 0 chr3 214858091 214858299 -3178859 - AluSx SINE Alu -98 214 7 21 36 0 0 chr3 214858314 214858342 -3178816 + AT_rich Low_complexity Low_complexity 1 28 0 1082 195 5 18 chr3 214858391 214858612 -3178546 + AluJb SINE Alu 70 287 -25 1267 157 112 61 chr3 214858670 214858964 -3178194 - AluSx SINE Alu -3 309 1 2129 102 3 0 chr3 214859032 214859317 -3177841 + AluSx SINE Alu 3 288 -24 207 0 0 0 chr3 214859317 214859340 -3177818 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 203 250 21 0 chr3 214859400 214859448 -3177710 + L2 LINE L2 3250 3298 -15 2542 95 15 82 chr3 214859678 214860140 -3177018 + MER4A LTR ERV1 1 431 -233 525 232 77 33 chr3 214860157 214860338 -3176820 + MER4C LTR ERV1 277 465 0 234 264 112 104 chr3 214860339 214860608 -3176550 - L2 LINE L2 -12 3260 2990 2364 63 17 0 chr3 214860854 214861153 -3176005 - AluSc SINE Alu -5 304 1 2306 101 0 0 chr3 214862889 214863195 -3173963 + AluSx SINE Alu 1 306 -6 213 337 65 0 chr3 214863985 214864077 -3173081 - L2 LINE L2 -22 3250 3153 446 311 40 7 chr3 214864241 214864389 -3172769 + L3 LINE CR1 1328 1480 -97 452 177 135 7 chr3 214864599 214864740 -3172418 - MLT1C LTR MaLR -6 461 303 183 279 0 0 chr3 214864920 214864963 -3172195 + MIR3 SINE MIR 164 206 -2 197 296 99 0 chr3 214865041 214865112 -3172046 + MIR SINE MIR 98 175 -87 25 75 0 0 chr3 214865203 214865256 -3171902 + GC_rich Low_complexity Low_complexity 1 53 0 411 247 24 53 chr3 214866357 214866527 -3170631 + L1MC4a LINE L1 5679 5843 -1965 210 268 36 0 chr3 214866824 214866880 -3170278 - MIR3 SINE MIR -6 202 145 953 122 0 0 chr3 214867062 214867231 -3169927 + FLAM_C SINE Alu 3 171 0 2558 133 57 5 chr3 214867751 214868157 -3169001 - MSTC LTR MaLR -1 427 1 1163 224 64 61 chr3 214868256 214868586 -3168572 + MER82 DNA MER2_type 321 651 -2 635 270 185 46 chr3 214868755 214868955 -3168203 - Charlie7 DNA MER1_type -1923 689 518 1469 161 138 0 chr3 214868955 214869216 -3167942 - AluJb SINE Alu -1 301 5 635 270 185 46 chr3 214869216 214869475 -3167683 - Charlie7 DNA MER1_type -2094 518 166 390 237 137 7 chr3 214869500 214869639 -3167519 - MER104 DNA Tc2 -18 162 6 363 186 383 66 chr3 214869682 214869849 -3167309 + MIR SINE MIR 5 224 -38 513 0 0 0 chr3 214871136 214871193 -3165965 + (CA)n Simple_repeat Simple_repeat 2 58 0 247 265 20 10 chr3 214871501 214871603 -3165555 + (TATATG)n Simple_repeat Simple_repeat 4 106 0 24 0 0 0 chr3 214871665 214871689 -3165469 + AT_rich Low_complexity Low_complexity 1 24 0 1775 117 4 0 chr3 214871869 214872125 -3165033 - AluSq SINE Alu -8 305 49 23 0 0 0 chr3 214872227 214872250 -3164908 + AT_rich Low_complexity Low_complexity 1 23 0 296 125 0 0 chr3 214872325 214872365 -3164793 + Alu SINE Alu 1 40 -262 975 119 0 8 chr3 214872368 214872502 -3164656 - AluJo/FLAM SINE Alu -169 133 1 4825 134 136 8 chr3 214872502 214873361 -3163797 - Tigger2 DNA MER2_type -79 2639 1671 1624 135 0 0 chr3 214873393 214873630 -3163528 + MER1B DNA MER1_type 103 339 0 1004 163 21 42 chr3 214873630 214873820 -3163338 - Tigger2 DNA MER2_type -1039 1679 1494 827 207 7 0 chr3 214873820 214873965 -3163193 + FRAM SINE Alu 1 146 -30 7912 131 71 42 chr3 214873974 214874338 -3162820 - Tigger2 DNA MER2_type -1204 1514 1162 1618 151 13 43 chr3 214874338 214874643 -3162515 - AluJo SINE Alu -16 296 1 7912 131 71 42 chr3 214874643 214875313 -3161845 - Tigger2 DNA MER2_type -1556 1162 422 2034 125 11 0 chr3 214875313 214875594 -3161564 - AluSx SINE Alu -11 301 18 7912 131 71 42 chr3 214875594 214876028 -3161130 - Tigger2 DNA MER2_type -2296 422 2 1615 142 16 81 chr3 214876324 214876633 -3160525 + AluJo SINE Alu 1 289 -23 1926 144 16 0 chr3 214876633 214876946 -3160212 + L1MB3 LINE L1 5820 6137 -46 348 182 0 0 chr3 214876946 214877001 -3160157 + U6 snRNA snRNA 1 55 -52 261 58 96 39 chr3 214877009 214877061 -3160097 + L1MB3 LINE L1 6128 6182 -1 2295 95 0 0 chr3 214877553 214877848 -3159310 + AluSq SINE Alu 1 295 -18 2246 103 0 0 chr3 214877852 214878154 -3159004 + AluSg SINE Alu 1 302 -8 2173 86 23 33 chr3 214879506 214879808 -3157350 + AluSq SINE Alu 1 299 -14 768 179 0 50 chr3 214879819 214879959 -3157199 + FLAM_C SINE Alu 1 133 0 2585 79 65 11 chr3 214880320 214880674 -3156484 + L1PB1 LINE L1 5777 6149 -2 823 188 67 0 chr3 214880804 214880953 -3156205 - FAM SINE Alu -16 159 1 441 116 29 14 chr3 214881113 214881182 -3155976 + AluJ/FLAM SINE Alu 2 71 -241 2182 125 3 0 chr3 214881197 214881502 -3155656 - AluSx SINE Alu -2 310 5 2318 92 0 0 chr3 214882261 214882556 -3154602 + AluSq SINE Alu 1 295 -18 2235 103 0 0 chr3 214882563 214882863 -3154295 + AluSg SINE Alu 3 302 -8 21 0 0 0 chr3 214884390 214884411 -3152747 + GC_rich Low_complexity Low_complexity 1 21 0 961 177 0 69 chr3 214884818 214884852 -3152306 + AluJb SINE Alu 113 148 -164 2233 95 3 7 chr3 214884852 214885147 -3152011 + AluSq SINE Alu 7 300 -13 961 177 0 69 chr3 214885147 214885315 -3151843 + AluJb SINE Alu 148 301 -11 1827 160 14 7 chr3 214885531 214885825 -3151333 + AluJb SINE Alu 1 296 -16 1709 194 48 6 chr3 214886476 214886806 -3150352 + MER2 DNA MER2_type 1 344 0 2046 137 0 10 chr3 214887389 214887689 -3149469 - AluSx SINE Alu -15 297 1 1014 196 0 0 chr3 214887819 214887987 -3149171 - FRAM SINE Alu -8 168 1 460 327 139 5 chr3 214889627 214889850 -3147308 + MIR SINE MIR 8 260 -2 2101 127 0 0 chr3 214889978 214890288 -3146870 + AluSq SINE Alu 1 310 0 2212 112 3 7 chr3 214891363 214891667 -3145491 + AluSx SINE Alu 2 304 -8 192 287 161 11 chr3 214892736 214892823 -3144335 - L2 LINE L2 -6 3307 3208 2369 94 0 0 chr3 214892837 214893134 -3144024 - AluSx SINE Alu -13 299 3 1617 199 65 17 chr3 214893266 214893669 -3143489 - MLT1C LTR MaLR -45 422 1 1143 81 0 0 chr3 214894079 214894215 -3142943 + AluSq/x SINE Alu 1 136 -177 1848 100 3 103 chr3 214894215 214894351 -3142807 + AluSq SINE Alu 1 92 -221 2252 81 0 18 chr3 214894351 214894665 -3142493 + AluSc SINE Alu 1 309 0 1848 100 3 103 chr3 214894665 214894846 -3142312 + AluSq SINE Alu 92 289 -24 199 275 28 121 chr3 214896016 214896053 -3141105 + L2 LINE L2 2948 2987 -285 2429 91 0 0 chr3 214896053 214896361 -3140797 - AluSg SINE Alu -2 308 1 199 275 28 121 chr3 214896361 214896505 -3140653 + L2 LINE L2 2987 3112 -160 26 0 0 27 chr3 214897178 214897197 -3139961 + AT_rich Low_complexity Low_complexity 1 20 -16 1587 158 79 11 chr3 214897197 214897476 -3139682 - AluJo SINE Alu -14 298 1 26 0 0 27 chr3 214897476 214897493 -3139665 + AT_rich Low_complexity Low_complexity 20 36 0 267 306 176 0 chr3 214897591 214897699 -3139459 - L2 LINE L2 -49 3223 3097 2228 116 0 0 chr3 214898228 214898529 -3138629 + AluSg SINE Alu 1 301 -9 303 360 30 0 chr3 214899505 214899605 -3137553 + MIR SINE MIR 42 144 -64 589 261 112 79 chr3 214899814 214900117 -3137041 - L2 LINE L2 0 3313 3001 1658 161 32 7 chr3 214901154 214901433 -3135725 + AluJo SINE Alu 5 290 -22 692 205 35 60 chr3 214901938 214902046 -3135112 + MLT1D LTR MaLR 1 103 -402 2131 106 3 17 chr3 214902046 214902347 -3134811 - AluSx SINE Alu -15 297 1 692 205 35 60 chr3 214902347 214902438 -3134720 + MLT1D LTR MaLR 103 195 -310 324 64 0 0 chr3 214902450 214902497 -3134661 + (CA)n Simple_repeat Simple_repeat 2 48 0 201 207 37 12 chr3 214902745 214902827 -3134331 + G-rich Low_complexity Low_complexity 2 85 0 312 226 0 0 chr3 214902903 214902996 -3134162 + G-rich Low_complexity Low_complexity 1 93 0 2047 139 3 3 chr3 214903381 214903684 -3133474 + AluSq SINE Alu 1 303 -10 21 0 0 0 chr3 214903759 214903780 -3133378 + AT_rich Low_complexity Low_complexity 1 21 0 315 247 142 38 chr3 214904047 214904286 -3132872 - L1ME4a LINE L1 -67 6054 5791 739 199 32 13 chr3 214904304 214904460 -3132698 - MER58A DNA MER1_type -29 195 37 2133 129 3 0 chr3 214904936 214905238 -3131920 + AluSq SINE Alu 1 303 -10 30 45 0 0 chr3 214905577 214905621 -3131537 + AT_rich Low_complexity Low_complexity 1 44 0 731 192 39 19 chr3 214905855 214906011 -3131147 - MER58A DNA MER1_type -29 195 37 21 0 0 0 chr3 214906550 214906571 -3130587 + AT_rich Low_complexity Low_complexity 1 21 0 2543 54 0 0 chr3 214906576 214906871 -3130287 - AluY SINE Alu -16 295 1 211 146 0 24 chr3 214907481 214907522 -3129636 + (TTTTTA)n Simple_repeat Simple_repeat 5 44 0 21 0 0 0 chr3 214909084 214909105 -3128053 + AT_rich Low_complexity Low_complexity 1 21 0 185 294 44 15 chr3 214910969 214911037 -3126121 - MIR SINE MIR -72 190 121 381 186 70 62 chr3 214911577 214911706 -3125452 - MER103 DNA DNA -27 139 10 1983 155 139 8 chr3 214913018 214913392 -3123766 + MSTA LTR MaLR 6 428 0 636 208 8 8 chr3 214913744 214913864 -3123294 - FLAM_A SINE Alu -13 120 1 2074 116 40 7 chr3 214913865 214914166 -3122992 - AluSx SINE Alu -1 311 1 2444 64 0 58 chr3 214914176 214914502 -3122656 - AluY SINE Alu -4 307 1 184 244 0 22 chr3 214914760 214914805 -3122353 - L2 LINE L2 -15 3257 3214 201 262 188 70 chr3 214914936 214914999 -3122159 + L2 LINE L2 2311 2365 -949 2076 123 7 10 chr3 214914999 214915301 -3121857 - AluSx SINE Alu -11 301 1 201 262 188 70 chr3 214915301 214915493 -3121665 + L2 LINE L2 2365 2596 -718 1580 211 0 7 chr3 214915507 214915796 -3121362 - AluJo SINE Alu -25 287 1 2142 58 55 31 chr3 214915805 214916097 -3121061 - AluY SINE Alu -12 299 1 385 357 84 41 chr3 214916108 214916656 -3120502 + L2 LINE L2 2698 3271 -1 224 293 0 0 chr3 214916833 214916891 -3120267 - MIR SINE MIR -114 94 37 189 0 0 0 chr3 214917191 214917212 -3119946 + (TA)n Simple_repeat Simple_repeat 2 22 0 1932 118 6 68 chr3 214917212 214917535 -3119623 - AluJb SINE Alu -9 303 1 1830 151 45 0 chr3 214917920 214918212 -3118946 - L1MC1 LINE L1 0 6333 6029 240 185 93 19 chr3 214918245 214918299 -3118859 - L1MC1 LINE L1 -260 6073 6016 230 205 0 0 chr3 214918587 214918626 -3118532 - L1MC1 LINE L1 -260 6073 6035 226 205 0 0 chr3 214918777 214918816 -3118342 - L1MC1 LINE L1 -260 6073 6035 228 205 0 0 chr3 214918961 214919000 -3118158 - L1MC1 LINE L1 -260 6073 6035 231 184 0 0 chr3 214919490 214919528 -3117630 - L1MC1 LINE L1 -260 6073 6036 240 179 0 0 chr3 214919528 214919567 -3117591 - L1MC1 LINE L1 -260 6073 6035 243 179 0 0 chr3 214919794 214919833 -3117325 - L1MC1 LINE L1 -260 6073 6035 228 205 0 0 chr3 214919908 214919947 -3117211 - L1MC1 LINE L1 -260 6073 6035 251 195 0 0 chr3 214920060 214920101 -3117057 - L1MC1 LINE L1 -260 6073 6033 252 188 62 0 chr3 214920212 214920260 -3116898 - L1MC1 LINE L1 -260 6073 6023 228 205 0 0 chr3 214920439 214920478 -3116680 - L1MC1 LINE L1 -260 6073 6035 225 225 0 0 chr3 214920694 214920734 -3116424 - L1MC1 LINE L1 -260 6073 6034 243 179 0 0 chr3 214920770 214920809 -3116349 - L1MC1 LINE L1 -260 6073 6035 225 167 0 0 chr3 214920810 214920846 -3116312 - L1MC1 LINE L1 -262 6071 6036 240 179 0 0 chr3 214920846 214920885 -3116273 - L1MC1 LINE L1 -260 6073 6035 240 179 0 0 chr3 214920884 214920923 -3116235 - L1MC1 LINE L1 -260 6073 6035 232 179 0 0 chr3 214921112 214921151 -3116007 - L1MC1 LINE L1 -260 6073 6035 238 184 0 0 chr3 214921228 214921266 -3115892 - L1MC1 LINE L1 -262 6071 6034 247 182 24 5 chr3 214921633 214921687 -3115471 - L1MC1 LINE L1 -260 6073 6020 236 200 0 0 chr3 214921823 214921863 -3115295 - L1MC1 LINE L1 -260 6073 6034 236 200 0 0 chr3 214922013 214922053 -3115105 - L1MC1 LINE L1 -260 6073 6034 236 200 0 0 chr3 214922089 214922129 -3115029 - L1MC1 LINE L1 -260 6073 6034 254 175 0 0 chr3 214922393 214922433 -3114725 - L1MC1 LINE L1 -260 6073 6034 229 200 0 0 chr3 214922469 214922509 -3114649 - L1MC1 LINE L1 -260 6073 6034 254 175 0 0 chr3 214922545 214922585 -3114573 - L1MC1 LINE L1 -260 6073 6034 254 175 0 0 chr3 214922621 214922661 -3114497 - L1MC1 LINE L1 -260 6073 6034 3582 156 88 2 chr3 214922811 214923438 -3113720 - L1MC1 LINE L1 -260 6073 5393 1953 147 10 13 chr3 214923438 214923737 -3113421 - AluJb SINE Alu -14 298 1 765 154 46 8 chr3 214923737 214923867 -3113291 - AluJo SINE Alu -177 135 1 548 178 31 0 chr3 214923869 214923998 -3113160 - L1MC1 LINE L1 -841 5305 5173 3352 128 106 97 chr3 214924087 214924512 -3112646 + L1MA8 LINE L1 5478 5898 -393 2373 85 0 16 chr3 214924512 214924819 -3112339 + AluY SINE Alu 1 302 -9 3352 128 106 97 chr3 214924819 214925007 -3112151 + L1MA8 LINE L1 5898 6083 -208 2003 143 10 17 chr3 214925007 214925308 -3111850 + AluJb SINE Alu 1 299 -13 3352 128 106 97 chr3 214925308 214925497 -3111661 + L1MA8 LINE L1 6083 6288 -3 2096 123 0 7 chr3 214925598 214925890 -3111268 - AluSq SINE Alu -23 290 1 1922 130 7 24 chr3 214925892 214926184 -3110974 - AluSx SINE Alu -23 289 3 2249 102 3 7 chr3 214926733 214927038 -3110120 - AluSg SINE Alu -6 304 1 1072 178 45 0 chr3 214929770 214929972 -3107186 - MER2 DNA MER2_type 0 345 135 885 211 0 17 chr3 214930007 214930182 -3106976 + AluJb SINE Alu 136 307 -5 701 155 14 84 chr3 214930182 214930324 -3106834 - MER2 DNA MER2_type -213 132 1 2267 108 79 15 chr3 214930350 214930692 -3106466 - THE1B LTR MaLR 0 364 1 220 278 56 0 chr3 214930705 214930777 -3106381 - MIR SINE MIR -169 93 18 470 265 203 34 chr3 214930887 214931275 -3105883 + L2 LINE L2 2770 3229 -84 1270 152 47 24 chr3 214931275 214931486 -3105672 + THE1B LTR MaLR 92 307 -57 239 308 15 0 chr3 214931486 214931551 -3105607 + L2 LINE L2 3222 3287 -26 183 225 75 75 chr3 214931571 214931691 -3105467 - MIR SINE MIR -73 189 70 287 263 112 53 chr3 214932102 214932180 -3104978 + MIR SINE MIR 98 170 -92 2132 130 0 7 chr3 214932180 214932481 -3104677 - AluSg SINE Alu -11 299 1 287 263 112 53 chr3 214932481 214932554 -3104604 + MIR SINE MIR 170 258 -4 202 357 51 10 chr3 214932563 214932661 -3104497 - L2 LINE L2 -33 3239 3138 1062 206 29 32 chr3 214932719 214932996 -3104162 + L2 LINE L2 2451 2726 -588 2082 160 87 73 chr3 214933001 214933097 -3104061 + MLT1D LTR MaLR 6 99 -406 2055 118 7 0 chr3 214933097 214933401 -3103757 + AluSg SINE Alu 1 306 0 2082 160 87 73 chr3 214933401 214933744 -3103414 + MLT1D LTR MaLR 99 456 -49 2540 73 0 0 chr3 214933744 214934045 -3103113 - AluY SINE Alu -10 301 1 2082 160 87 73 chr3 214934045 214934096 -3103062 + MLT1D LTR MaLR 456 505 0 899 261 95 12 chr3 214934096 214934630 -3102528 + L2 LINE L2 2722 3302 -11 2246 105 10 0 chr3 214934630 214934925 -3102233 + AluSc SINE Alu 1 298 -11 899 261 95 12 chr3 214934925 214934939 -3102219 + L2 LINE L2 3302 3313 0 522 222 111 63 chr3 214935215 214935336 -3101822 + MIR SINE MIR 32 167 -95 1437 111 65 0 chr3 214935336 214935437 -3101721 + MER30 DNA MER1_type 1 94 -136 210 37 0 0 chr3 214935437 214935464 -3101694 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 1437 111 65 0 chr3 214935464 214935578 -3101580 + MER30 DNA MER1_type 94 230 0 522 222 111 63 chr3 214935578 214935645 -3101513 + MIR SINE MIR 167 229 -33 2377 94 3 0 chr3 214935647 214935945 -3101213 + AluSp SINE Alu 1 299 -14 1624 181 7 20 chr3 214936049 214936352 -3100806 - AluJo SINE Alu -13 299 1 23 0 0 0 chr3 214936363 214936386 -3100772 + AT_rich Low_complexity Low_complexity 1 23 0 804 114 48 18 chr3 214936386 214936553 -3100605 - AluY SINE Alu 0 311 140 2165 107 0 14 chr3 214936656 214936945 -3100213 - AluSx SINE Alu -27 285 1 2514 84 0 0 chr3 214936959 214937270 -3099888 - AluY SINE Alu 0 311 1 2230 112 0 3 chr3 214937272 214937568 -3099590 - AluSc SINE Alu -14 295 1 1707 139 17 44 chr3 214937578 214937873 -3099285 - AluJo SINE Alu -25 287 1 2346 77 7 3 chr3 214937881 214938181 -3098977 - AluY SINE Alu -10 301 1 255 317 69 0 chr3 214938182 214938283 -3098875 + L2 LINE L2 3157 3264 -8 200 283 0 33 chr3 214938325 214938385 -3098773 - MIR3 SINE MIR -24 184 127 357 264 27 9 chr3 214938444 214938554 -3098604 + L2 LINE L2 3186 3297 -16 288 188 196 36 chr3 214938794 214938906 -3098252 + L1ME LINE L1 5492 5621 -500 261 0 0 0 chr3 214938942 214938971 -3098187 + (CA)n Simple_repeat Simple_repeat 2 30 0 399 241 56 0 chr3 214938979 214939087 -3098071 + L1ME LINE L1 5696 5809 -312 23 0 0 0 chr3 214939335 214939358 -3097800 + AT_rich Low_complexity Low_complexity 1 23 0 487 36 0 0 chr3 214939553 214939609 -3097549 + U6 snRNA snRNA 1 56 -51 36 0 0 0 chr3 214939615 214939651 -3097507 + AT_rich Low_complexity Low_complexity 1 36 0 2235 114 10 0 chr3 214939768 214940074 -3097084 + AluSc SINE Alu 1 309 0 2274 85 0 39 chr3 214941060 214941367 -3095791 + AluY SINE Alu 1 295 -16 2347 88 7 0 chr3 214941384 214941680 -3095478 + AluSx SINE Alu 1 298 -14 180 0 0 0 chr3 214942818 214942838 -3094320 + (TA)n Simple_repeat Simple_repeat 2 21 0 2270 99 3 0 chr3 214942921 214943213 -3093945 - AluSp SINE Alu -20 293 1 1074 91 0 0 chr3 214943215 214943347 -3093811 - AluSp SINE Alu -181 132 1 234 234 0 16 chr3 214943349 214943413 -3093745 - MIR SINE MIR -33 229 167 998 100 6 72 chr3 214943416 214943596 -3093562 - MER30 DNA MER1_type 0 230 63 243 179 0 0 chr3 214944037 214944076 -3093082 - L1MC1 LINE L1 -260 6073 6035 227 205 0 0 chr3 214944151 214944190 -3092968 - L1MC1 LINE L1 -260 6073 6035 233 205 0 0 chr3 214944303 214944342 -3092816 - L1MC1 LINE L1 -260 6073 6035 232 200 0 0 chr3 214944596 214944636 -3092522 - L1MC1 LINE L1 -260 6073 6034 231 184 0 0 chr3 214944672 214944710 -3092448 - L1MC1 LINE L1 -260 6073 6036 247 179 0 0 chr3 214944710 214944749 -3092409 - L1MC1 LINE L1 -260 6073 6035 234 179 0 0 chr3 214945052 214945091 -3092067 - L1MC1 LINE L1 -260 6073 6035 238 184 0 0 chr3 214945168 214945206 -3091952 - L1MC1 LINE L1 -262 6071 6034 227 205 0 0 chr3 214945315 214945354 -3091804 - L1MC1 LINE L1 -260 6073 6035 230 219 0 0 chr3 214945881 214945922 -3091236 - L1MC1 LINE L1 -260 6073 6033 236 200 0 0 chr3 214945957 214945997 -3091161 - L1MC1 LINE L1 -260 6073 6034 243 179 0 0 chr3 214946299 214946338 -3090820 - L1MC1 LINE L1 -260 6073 6035 239 200 0 0 chr3 214946527 214946567 -3090591 - L1MC1 LINE L1 -260 6073 6034 239 200 0 0 chr3 214946679 214946719 -3090439 - L1MC1 LINE L1 -260 6073 6034 254 175 0 0 chr3 214946793 214946833 -3090325 - L1MC1 LINE L1 -260 6073 6034 232 179 0 0 chr3 214946945 214946984 -3090174 - L1MC1 LINE L1 -260 6073 6035 239 200 0 0 chr3 214947059 214947099 -3090059 - L1MC1 LINE L1 -260 6073 6034 240 179 0 0 chr3 214947211 214947250 -3089908 - L1MC1 LINE L1 -260 6073 6035 233 200 0 0 chr3 214947325 214947365 -3089793 - L1MC1 LINE L1 -260 6073 6034 243 179 0 0 chr3 214947477 214947516 -3089642 - L1MC1 LINE L1 -260 6073 6035 227 205 0 0 chr3 214947553 214947592 -3089566 - L1MC1 LINE L1 -260 6073 6035 225 184 0 0 chr3 214948385 214948423 -3088735 - L1MC1 LINE L1 -260 6073 6036 240 179 0 0 chr3 214948423 214948462 -3088696 - L1MC1 LINE L1 -260 6073 6035 240 179 0 0 chr3 214948613 214948652 -3088506 - L1MC1 LINE L1 -260 6073 6035 236 200 0 0 chr3 214948727 214948767 -3088391 - L1MC1 LINE L1 -260 6073 6034 254 175 0 0 chr3 214948879 214948919 -3088239 - L1MC1 LINE L1 -260 6073 6034 254 175 0 0 chr3 214948917 214948957 -3088201 - L1MC1 LINE L1 -260 6073 6034 229 200 0 0 chr3 214949069 214949109 -3088049 - L1MC1 LINE L1 -260 6073 6034 254 175 0 0 chr3 214949145 214949185 -3087973 - L1MC1 LINE L1 -260 6073 6034 427 221 3 3 chr3 214949641 214949749 -3087409 + AluJ/FLAM SINE Alu 3 93 -209 1168 150 13 75 chr3 214949751 214949978 -3087180 - AluJb SINE Alu -99 213 1 1622 152 32 4 chr3 214950362 214950639 -3086519 - L1MC1 LINE L1 0 6333 6049 240 185 93 19 chr3 214950686 214950740 -3086418 - L1MC1 LINE L1 -260 6073 6016 229 205 0 0 chr3 214951029 214951068 -3086090 - L1MC1 LINE L1 -260 6073 6035 239 200 0 0 chr3 214951143 214951183 -3085975 - L1MC1 LINE L1 -260 6073 6034 229 225 0 0 chr3 214951295 214951335 -3085823 - L1MC1 LINE L1 -260 6073 6034 243 200 0 0 chr3 214951371 214951411 -3085747 - L1MC1 LINE L1 -260 6073 6034 236 204 93 19 chr3 214951447 214951501 -3085657 - L1MC1 LINE L1 -260 6073 6016 227 205 0 0 chr3 214951523 214951562 -3085596 - L1MC1 LINE L1 -260 6073 6035 238 184 0 0 chr3 214951867 214951905 -3085253 - L1MC1 LINE L1 -262 6071 6034 238 184 0 0 chr3 214951943 214951981 -3085177 - L1MC1 LINE L1 -262 6071 6034 247 179 0 0 chr3 214952093 214952132 -3085026 - L1MC1 LINE L1 -260 6073 6035 229 205 0 0 chr3 214952207 214952246 -3084912 - L1MC1 LINE L1 -260 6073 6035 243 200 0 0 chr3 214952283 214952323 -3084835 - L1MC1 LINE L1 -260 6073 6034 247 179 0 0 chr3 214952398 214952437 -3084721 - L1MC1 LINE L1 -260 6073 6035 239 200 0 0 chr3 214952577 214952617 -3084541 - L1MC1 LINE L1 -260 6073 6034 234 184 0 0 chr3 214952653 214952691 -3084467 - L1MC1 LINE L1 -260 6073 6036 240 179 0 0 chr3 214952691 214952730 -3084428 - L1MC1 LINE L1 -260 6073 6035 234 179 0 0 chr3 214952957 214952996 -3084162 - L1MC1 LINE L1 -260 6073 6035 238 184 0 0 chr3 214953073 214953111 -3084047 - L1MC1 LINE L1 -262 6071 6034 230 200 0 0 chr3 214953147 214953187 -3083971 - L1MC1 LINE L1 -260 6073 6034 243 200 0 0 chr3 214953223 214953263 -3083895 - L1MC1 LINE L1 -260 6073 6034 227 205 0 0 chr3 214953299 214953338 -3083820 - L1MC1 LINE L1 -260 6073 6035 225 205 0 0 chr3 214953375 214953414 -3083744 - L1MC1 LINE L1 -260 6073 6035 240 179 0 0 chr3 214953904 214953943 -3083215 - L1MC1 LINE L1 -260 6073 6035 243 179 0 0 chr3 214954170 214954209 -3082949 - L1MC1 LINE L1 -260 6073 6035 239 200 0 0 chr3 214954436 214954476 -3082682 - L1MC1 LINE L1 -260 6073 6034 239 200 0 0 chr3 214954512 214954552 -3082606 - L1MC1 LINE L1 -260 6073 6034 239 200 0 0 chr3 214954778 214954818 -3082340 - L1MC1 LINE L1 -260 6073 6034 239 200 0 0 chr3 214954930 214954970 -3082188 - L1MC1 LINE L1 -260 6073 6034 244 175 0 0 chr3 214955082 214955122 -3082036 - L1MC1 LINE L1 -260 6073 6034 239 200 0 0 chr3 214955158 214955198 -3081960 - L1MC1 LINE L1 -260 6073 6034 421 247 77 70 chr3 214955490 214955649 -3081509 + L1MC5 LINE L1 7627 7790 -171 2127 120 0 13 chr3 214955649 214955949 -3081209 + AluSx SINE Alu 1 296 -16 421 247 77 70 chr3 214955949 214956048 -3081110 + L1MC5 LINE L1 7790 7887 -74 7510 195 61 34 chr3 214956092 214956656 -3080502 - L1MB7 LINE L1 -1 6183 5636 2211 104 0 32 chr3 214956656 214956964 -3080194 - AluY SINE Alu -13 298 1 7510 195 61 34 chr3 214956964 214958266 -3078892 - L1MB7 LINE L1 -548 5636 4370 1127 178 112 82 chr3 214958266 214958597 -3078561 + MER2 DNA MER2_type 4 344 0 7510 195 61 34 chr3 214958597 214959146 -3078012 - L1MB7 LINE L1 -1814 4370 3837 1712 203 3 0 chr3 214959146 214959446 -3077712 - AluJb SINE Alu -11 301 1 1764 164 20 30 chr3 214959449 214959753 -3077405 - AluJo SINE Alu -11 301 1 7510 195 61 34 chr3 214959753 214960121 -3077037 - L1MB7 LINE L1 -2348 3836 3325 2468 80 0 13 chr3 214960566 214960880 -3076278 - AluSx SINE Alu -2 310 1 1955 163 13 3 chr3 214960918 214961225 -3075933 + AluJo SINE Alu 1 310 -2 818 21 0 0 chr3 214961242 214961335 -3075823 + AluY SINE Alu 217 309 -2 960 296 84 29 chr3 214961895 214962516 -3074642 + L2 LINE L2 2294 2952 -320 387 300 60 25 chr3 214962562 214962762 -3074396 + L1MC4 LINE L1 7365 7571 -471 225 136 45 0 chr3 214962904 214962948 -3074210 + HY1 scRNA scRNA 64 109 -3 370 200 35 0 chr3 214963101 214963186 -3073972 + MLT1D-int LTR MaLR 1284 1371 0 1748 186 98 70 chr3 214963186 214963674 -3073484 + MLT1D LTR MaLR 1 502 -3 1125 176 52 26 chr3 214963674 214963907 -3073251 - Tigger3(Golem) DNA MER2_type 0 3034 2796 1804 174 14 3 chr3 214963907 214964201 -3072957 + AluSx SINE Alu 1 297 -15 201 213 0 0 chr3 214964237 214964284 -3072874 + (CATATA)n Simple_repeat Simple_repeat 3 49 0 267 222 0 0 chr3 214964457 214964538 -3072620 + (TA)n Simple_repeat Simple_repeat 2 82 0 226 253 22 44 chr3 214964539 214964630 -3072528 + L1MC4 LINE L1 6614 6702 -1340 1951 153 50 0 chr3 214964674 214964995 -3072163 + MER7A DNA MER2_type 12 346 0 1820 219 80 49 chr3 214964996 214965385 -3071773 + L1ME2 LINE L1 5424 5842 -322 2171 117 31 0 chr3 214965385 214965676 -3071482 + AluSx SINE Alu 1 300 -12 1820 219 80 49 chr3 214965676 214965934 -3071224 + L1ME2 LINE L1 5842 6091 -73 829 188 5 32 chr3 214965989 214966175 -3070983 - L1M4 LINE L1 -1006 5140 4960 251 214 83 48 chr3 214966165 214966310 -3070848 + L1MC5 LINE L1 7781 7930 -31 * 243 200 0 0 chr3 214966617 214966657 -3070501 - L1MC1 LINE L1 -260 6073 6034 236 204 93 19 chr3 214966693 214966747 -3070411 - L1MC1 LINE L1 -260 6073 6016 227 205 0 0 chr3 214966769 214966808 -3070350 - L1MC1 LINE L1 -260 6073 6035 238 184 0 0 chr3 214967113 214967151 -3070007 - L1MC1 LINE L1 -262 6071 6034 247 179 0 0 chr3 214967263 214967302 -3069856 - L1MC1 LINE L1 -260 6073 6035 243 179 0 0 chr3 214967518 214967557 -3069601 - L1MC1 LINE L1 -260 6073 6035 240 179 0 0 chr3 214967668 214967707 -3069451 - L1MC1 LINE L1 -260 6073 6035 234 179 0 0 chr3 214967934 214967973 -3069185 - L1MC1 LINE L1 -260 6073 6035 238 184 0 0 chr3 214968050 214968088 -3069070 - L1MC1 LINE L1 -262 6071 6034 243 200 0 0 chr3 214968124 214968164 -3068994 - L1MC1 LINE L1 -260 6073 6034 243 200 0 0 chr3 214968200 214968240 -3068918 - L1MC1 LINE L1 -260 6073 6034 227 205 0 0 chr3 214968276 214968315 -3068843 - L1MC1 LINE L1 -260 6073 6035 232 219 0 0 chr3 214968842 214968883 -3068275 - L1MC1 LINE L1 -260 6073 6033 229 205 0 0 chr3 214969184 214969223 -3067935 - L1MC1 LINE L1 -260 6073 6035 226 205 0 0 chr3 214969373 214969412 -3067746 - L1MC1 LINE L1 -260 6073 6035 227 205 0 0 chr3 214969557 214969596 -3067562 - L1MC1 LINE L1 -260 6073 6035 243 179 0 0 chr3 214969633 214969672 -3067486 - L1MC1 LINE L1 -260 6073 6035 225 205 0 0 chr3 214969709 214969748 -3067410 - L1MC1 LINE L1 -260 6073 6035 234 179 0 0 chr3 214970013 214970052 -3067106 - L1MC1 LINE L1 -260 6073 6035 229 205 0 0 chr3 214970203 214970242 -3066916 - L1MC1 LINE L1 -260 6073 6035 243 179 0 0 chr3 214970493 214970532 -3066626 - L1MC1 LINE L1 -260 6073 6035 243 179 0 0 chr3 214970748 214970787 -3066371 - L1MC1 LINE L1 -260 6073 6035 240 179 0 0 chr3 214970822 214970861 -3066297 - L1MC1 LINE L1 -260 6073 6035 243 200 0 0 chr3 214971278 214971318 -3065840 - L1MC1 LINE L1 -260 6073 6034 243 200 0 0 chr3 214971354 214971394 -3065764 - L1MC1 LINE L1 -260 6073 6034 227 205 0 0 chr3 214971430 214971469 -3065689 - L1MC1 LINE L1 -260 6073 6035 227 205 0 0 chr3 214971885 214971924 -3065234 - L1MC1 LINE L1 -260 6073 6035 231 184 0 0 chr3 214972110 214972148 -3065010 - L1MC1 LINE L1 -260 6073 6036 240 179 0 0 chr3 214972148 214972187 -3064971 - L1MC1 LINE L1 -260 6073 6035 243 179 0 0 chr3 214972414 214972453 -3064705 - L1MC1 LINE L1 -260 6073 6035 226 205 0 0 chr3 214972528 214972567 -3064591 - L1MC1 LINE L1 -260 6073 6035 234 184 0 0 chr3 214972973 214973011 -3064147 - L1MC1 LINE L1 -260 6073 6036 240 179 0 0 chr3 214973011 214973050 -3064108 - L1MC1 LINE L1 -260 6073 6035 240 179 0 0 chr3 214973087 214973126 -3064032 - L1MC1 LINE L1 -260 6073 6035 229 189 0 0 chr3 214973127 214973164 -3063994 - L1MC1 LINE L1 -262 6071 6035 232 179 0 0 chr3 214973315 214973354 -3063804 - L1MC1 LINE L1 -260 6073 6035 238 184 0 0 chr3 214973431 214973469 -3063689 - L1MC1 LINE L1 -262 6071 6034 243 200 0 0 chr3 214973505 214973545 -3063613 - L1MC1 LINE L1 -260 6073 6034 225 205 0 0 chr3 214973543 214973582 -3063576 - L1MC1 LINE L1 -260 6073 6035 * 243 200 0 0 chr3 214973581 214973621 -3063537 - L1MC1 LINE L1 -260 6073 6034 239 200 0 0 chr3 214973771 214973811 -3063347 - L1MC1 LINE L1 -260 6073 6034 238 204 93 19 chr3 214973847 214973901 -3063257 - L1MC1 LINE L1 -260 6073 6016 239 200 0 0 chr3 214974064 214974104 -3063054 - L1MC1 LINE L1 -260 6073 6034 243 179 0 0 chr3 214974216 214974255 -3062903 - L1MC1 LINE L1 -260 6073 6035 254 175 0 0 chr3 214974292 214974332 -3062826 - L1MC1 LINE L1 -260 6073 6034 228 200 0 0 chr3 214974444 214974484 -3062674 - L1MC1 LINE L1 -260 6073 6034 254 175 0 0 chr3 214974520 214974560 -3062598 - L1MC1 LINE L1 -260 6073 6034 225 225 0 0 chr3 214975725 214975765 -3061393 - L1MC1 LINE L1 -260 6073 6034 243 179 0 0 chr3 214975801 214975840 -3061318 - L1MC1 LINE L1 -260 6073 6035 240 179 0 0 chr3 214975875 214975914 -3061244 - L1MC1 LINE L1 -260 6073 6035 247 179 0 0 chr3 214976027 214976066 -3061092 - L1MC1 LINE L1 -260 6073 6035 1706 155 97 33 chr3 214976281 214976642 -3060516 + MLT1B LTR MaLR 7 390 0 656 289 75 57 chr3 214976650 214977104 -3060054 + LTR67 LTR ERVL 33 494 -63 2185 109 14 0 chr3 214977118 214977411 -3059747 + AluSc SINE Alu 2 298 -11 872 148 0 0 chr3 214977420 214977563 -3059595 + FLAM_C SINE Alu 2 144 0 1601 214 115 22 chr3 214977568 214977984 -3059174 - L1ME1 LINE L1 -5 6161 5707 335 242 42 11 chr3 214977984 214978079 -3059079 + LTR67 LTR ERVL 456 553 -4 2190 134 0 0 chr3 214978247 214978552 -3058606 - AluSx SINE Alu -7 305 1 263 331 29 40 chr3 214978605 214978780 -3058378 - L2 LINE L2 -670 2644 2472 278 250 13 13 chr3 214979106 214979182 -3057976 - L2 LINE L2 -5 3308 3233 262 215 43 108 chr3 214979492 214979524 -3057634 - L2 LINE L2 0 3313 3281 1977 132 27 144 chr3 214979524 214979732 -3057426 + MSTC LTR MaLR 1 121 -307 1493 202 18 0 chr3 214979732 214979859 -3057299 + AluJo SINE Alu 1 124 -188 1990 138 7 3 chr3 214979859 214980164 -3056994 + AluSx SINE Alu 1 306 -6 1493 202 18 0 chr3 214980164 214980318 -3056840 + AluJo SINE Alu 124 287 -25 1977 132 27 144 chr3 214980318 214980594 -3056564 + MSTC LTR MaLR 121 428 0 262 215 43 108 chr3 214980594 214980654 -3056504 - L2 LINE L2 -32 3281 3227 271 369 46 0 chr3 214980786 214980916 -3056242 - L2 LINE L2 -222 3050 2915 249 315 56 52 chr3 214981377 214981628 -3055530 - L2 LINE L2 -1335 1979 1728 289 309 119 32 chr3 214982113 214982456 -3054702 - L2 LINE L2 -1656 1658 1286 2400 82 0 0 chr3 214982490 214982784 -3054374 + AluSq SINE Alu 6 299 -14 1271 192 28 8 chr3 214982930 214983180 -3053978 + AluJb SINE Alu 1 255 -57 231 286 0 0 chr3 214983180 214983229 -3053929 + L2 LINE L2 2707 2755 -559 189 94 0 0 chr3 214983693 214983725 -3053433 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 2414 48 0 10 chr3 214983725 214984011 -3053147 - AluY SINE Alu -26 285 1 363 279 58 0 chr3 214984072 214984176 -3052982 + L2 LINE L2 2697 2806 -508 2149 107 4 0 chr3 214984572 214984875 -3052283 - AluSx SINE Alu 0 304 1 2310 102 0 7 chr3 214984875 214985179 -3051979 - AluSq SINE Alu -11 302 1 244 254 32 0 chr3 214985180 214985243 -3051915 + L2 LINE L2 3248 3312 -1 2380 106 0 0 chr3 214985617 214985928 -3051230 + AluSq SINE Alu 1 311 -2 553 245 236 9 chr3 214985946 214986162 -3050996 + Charlie8 DNA MER1_type 1 265 -2152 247 261 46 124 chr3 214986495 214986648 -3050510 - L2 LINE L2 -2820 494 354 1374 118 0 0 chr3 214987043 214987221 -3049937 + AluSg/x SINE Alu 118 295 -15 400 273 28 123 chr3 214987240 214987566 -3049592 + HsTC2 DNA Tc2 4 298 -1600 * 590 268 110 68 chr3 214987549 214987847 -3049311 + HsTC2 DNA Tc2 468 789 -1109 1747 153 29 36 chr3 214987847 214988154 -3049004 - AluJb SINE Alu -3 309 5 590 268 110 68 chr3 214988154 214988265 -3048893 + HsTC2 DNA Tc2 789 894 -1004 668 146 10 0 chr3 214988281 214988377 -3048781 + AluJ/FLAM SINE Alu 2 98 -214 198 229 83 0 chr3 214988493 214988541 -3048617 - MIR SINE MIR -3 259 208 280 290 14 0 chr3 214988578 214988647 -3048511 - MIR SINE MIR -187 75 6 22 0 0 0 chr3 214991563 214991585 -3045573 + AT_rich Low_complexity Low_complexity 1 22 0 2214 129 7 0 chr3 214992787 214993097 -3044061 + AluSx SINE Alu 1 312 0 1730 136 70 28 chr3 214993235 214993522 -3043636 + AluJo SINE Alu 1 299 -13 2286 101 0 3 chr3 214993638 214993936 -3043222 - AluSq SINE Alu -16 297 1 711 212 8 0 chr3 214994005 214994123 -3043035 - FLAM_A SINE Alu -13 120 2 3316 205 40 56 chr3 214994766 214994940 -3042218 + L1M4 LINE L1 2213 2388 -3758 1845 143 7 23 chr3 214994940 214995240 -3041918 + AluJb SINE Alu 1 295 -17 3316 205 40 56 chr3 214995240 214995908 -3041250 + L1M4 LINE L1 2388 3041 -3105 2179 96 25 0 chr3 214995908 214996190 -3040968 + AluSg SINE Alu 1 289 -21 3316 205 40 56 chr3 214996190 214996298 -3040860 + L1M4 LINE L1 3041 3149 -2997 226 205 0 0 chr3 214996408 214996447 -3040711 + L1MC1 LINE L1 6035 6073 -260 228 205 0 0 chr3 214996560 214996599 -3040559 + L1MC1 LINE L1 6035 6073 -260 239 200 0 0 chr3 214996749 214996789 -3040369 + L1MC1 LINE L1 6034 6073 -260 239 200 0 0 chr3 214996931 214996971 -3040187 + L1MC1 LINE L1 6034 6073 -260 239 200 0 0 chr3 214997083 214997123 -3040035 + L1MC1 LINE L1 6034 6073 -260 229 186 23 0 chr3 214997160 214997203 -3039955 + L1MC1 LINE L1 6035 6078 -255 254 175 0 0 chr3 214997273 214997313 -3039845 + L1MC1 LINE L1 6034 6073 -260 239 200 0 0 chr3 214997387 214997427 -3039731 + L1MC1 LINE L1 6034 6073 -260 239 200 0 0 chr3 214997539 214997579 -3039579 + L1MC1 LINE L1 6034 6073 -260 239 200 0 0 chr3 214997805 214997845 -3039313 + L1MC1 LINE L1 6034 6073 -260 239 200 0 0 chr3 214998071 214998111 -3039047 + L1MC1 LINE L1 6034 6073 -260 246 175 0 0 chr3 214998147 214998187 -3038971 + L1MC1 LINE L1 6034 6073 -260 239 200 0 0 chr3 214998299 214998339 -3038819 + L1MC1 LINE L1 6034 6073 -260 225 205 0 0 chr3 214998718 214998757 -3038401 + L1MC1 LINE L1 6035 6073 -260 232 200 0 0 chr3 214998869 214998909 -3038249 + L1MC1 LINE L1 6034 6073 -260 240 179 0 0 chr3 214998984 214999023 -3038135 + L1MC1 LINE L1 6035 6073 -260 239 200 0 0 chr3 214999399 214999439 -3037719 + L1MC1 LINE L1 6034 6073 -260 239 200 0 0 chr3 214999589 214999629 -3037529 + L1MC1 LINE L1 6034 6073 -260 239 200 0 0 chr3 214999741 214999781 -3037377 + L1MC1 LINE L1 6034 6073 -260 254 175 0 0 chr3 214999931 214999971 -3037187 + L1MC1 LINE L1 6034 6073 -260 409 226 0 0 chr3 215000109 215000193 -3036965 + AluSg/x SINE Alu 197 280 -30 306 0 0 0 chr3 215000206 215000240 -3036918 + (TA)n Simple_repeat Simple_repeat 1 34 0 284 0 28 0 chr3 215000239 215000275 -3036883 + (CA)n Simple_repeat Simple_repeat 2 38 0 * 248 221 419 7 chr3 215000279 215000415 -3036743 - MIR SINE MIR -42 220 29 725 266 0 6 chr3 215000471 215000629 -3036529 + MER45A DNA AcHobo 11 167 -11 1077 148 128 5 chr3 215000652 215000855 -3036303 + MER58B DNA MER1_type 78 305 -36 2307 106 3 0 chr3 215000857 215001160 -3035998 - AluSq SINE Alu -9 304 1 325 276 46 78 chr3 215001190 215001407 -3035751 - L1MC4 LINE L1 -40 8002 7793 181 352 80 16 chr3 215001658 215001783 -3035375 - L2 LINE L2 -473 2841 2709 1131 150 56 38 chr3 215001809 215002022 -3035136 + AluJo SINE Alu 87 303 -9 480 288 133 0 chr3 215002149 215002382 -3034776 + L1MC5 LINE L1 7639 7902 -59 591 255 25 43 chr3 215003191 215003352 -3033806 + MER5B DNA MER1_type 21 178 0 2130 115 10 3 chr3 215003557 215003853 -3033305 + AluSx SINE Alu 1 298 -14 2450 62 16 7 chr3 215003858 215004166 -3032992 + AluY SINE Alu 1 311 0 317 305 158 41 chr3 215004277 215004906 -3032252 + L1M4 LINE L1 4377 5112 -1034 790 101 18 0 chr3 215004954 215005063 -3032095 + HY1 scRNA scRNA 1 111 -1 1366 143 40 28 chr3 215005174 215005426 -3031732 + L1MB8 LINE L1 5914 6168 -10 1417 164 7 30 chr3 215005770 215006039 -3031119 + AluJo SINE Alu 1 263 -49 645 293 116 74 chr3 215006095 215006547 -3030611 - L2 LINE L2 -50 3222 2791 1853 160 28 3 chr3 215006547 215006835 -3030323 - AluJo SINE Alu -17 295 1 645 293 116 74 chr3 215006835 215007268 -3029890 - L2 LINE L2 -481 2791 2235 1373 167 26 72 chr3 215007269 215007575 -3029583 + AluJo SINE Alu 1 292 -20 756 259 47 43 chr3 215007953 215008142 -3029016 - L1ME LINE L1 -577 5585 5398 2116 100 10 3 chr3 215008142 215008431 -3028727 - AluSc SINE Alu -14 295 5 756 259 47 43 chr3 215008431 215008637 -3028521 - L1ME LINE L1 -764 5398 5175 21 57 0 0 chr3 215008715 215008750 -3028408 + AT_rich Low_complexity Low_complexity 1 35 0 3308 153 118 74 chr3 215008908 215008926 -3028232 - L1MC1 LINE L1 0 6333 6317 2217 92 10 3 chr3 215008926 215009219 -3027939 + AluSc SINE Alu 1 295 -14 3308 153 118 74 chr3 215009219 215009646 -3027512 - L1MC1 LINE L1 -16 6317 5910 1335 178 22 0 chr3 215009646 215009877 -3027281 - MER46A DNA MER2_type 0 236 1 3308 153 118 74 chr3 215009877 215010094 -3027064 - L1MC1 LINE L1 -423 5910 5704 816 208 0 0 chr3 215010094 215010224 -3026934 + FLAM_C SINE Alu 2 131 -12 3308 153 118 74 chr3 215010224 215010476 -3026682 - L1MC1 LINE L1 -629 5704 5355 1166 160 0 16 chr3 215010494 215010688 -3026470 - AluJo SINE Alu 0 312 122 466 108 34 129 chr3 215010688 215010727 -3026431 - L1M LINE L1 -814 5332 5291 1939 133 7 13 chr3 215010727 215011035 -3026123 - AluSx SINE Alu -6 306 1 466 108 34 129 chr3 215011035 215011177 -3025981 - L1M LINE L1 -855 5291 5198 470 314 113 13 chr3 215011462 215011691 -3025467 + L2 LINE L2 3061 3312 -1 1950 97 9 97 chr3 215011876 215012205 -3024953 - AluSx SINE Alu -12 300 1 842 158 0 43 chr3 215012316 215012455 -3024703 - AluJo SINE Alu -169 133 1 861 124 0 90 chr3 215012590 215012735 -3024423 - FLAM_C SINE Alu -1 132 1 537 136 0 11 chr3 215012956 215013044 -3024114 - L1MB3 LINE L1 -7 6176 6090 2829 198 29 12 chr3 215013059 215013410 -3023748 - L1MB3 LINE L1 -382 5801 5457 1817 153 24 68 chr3 215013410 215013790 -3023368 - MLT1A1 LTR MaLR -2 363 1 2829 198 29 12 chr3 215013790 215014236 -3022922 - L1MB3 LINE L1 -726 5457 4985 865 145 21 7 chr3 215014336 215014481 -3022677 - MLT1A1 LTR MaLR -218 147 1 9191 204 36 25 chr3 215014481 215015276 -3021882 - L1M3 LINE L1 -734 5449 4664 2356 108 0 9 chr3 215015276 215015592 -3021566 - AluSq SINE Alu 0 313 1 9191 204 36 25 chr3 215015592 215016705 -3020453 - L1M3 LINE L1 -1519 4664 3564 1750 179 0 7 chr3 215016705 215017006 -3020152 - AluJb SINE Alu -13 299 1 9191 204 36 25 chr3 215017006 215017474 -3019684 - L1M3 LINE L1 -2619 3564 3042 1600 193 35 0 chr3 215017474 215017759 -3019399 - AluJb SINE Alu -15 297 3 9191 204 36 25 chr3 215017759 215017797 -3019361 - L1M3 LINE L1 -3141 3042 3006 21 0 0 0 chr3 215017816 215017837 -3019321 + AT_rich Low_complexity Low_complexity 1 21 0 816 183 0 8 chr3 215017845 215017971 -3019187 - FLAM_C SINE Alu -18 125 1 411 182 0 0 chr3 215018566 215018632 -3018526 + AluJ/FLAM SINE Alu 14 79 -233 2501 119 68 31 chr3 215019114 215019485 -3017673 + MSTA LTR MaLR 1 390 -38 2346 95 0 3 chr3 215019485 215019780 -3017378 - AluSg SINE Alu -16 294 1 2501 119 68 31 chr3 215019780 215019821 -3017337 + MSTA LTR MaLR 390 428 0 2222 105 3 10 chr3 215020085 215020389 -3016769 + AluSx SINE Alu 1 302 -10 330 236 14 7 chr3 215020390 215020530 -3016628 + (TA)n Simple_repeat Simple_repeat 2 142 0 538 190 66 22 chr3 215020874 215021011 -3016147 + L2 LINE L2 1916 2058 -1256 692 152 0 0 chr3 215021026 215021125 -3016033 - AluJ/FLAM SINE Alu -212 100 2 2313 298 78 42 chr3 215021126 215022295 -3014863 + L2 LINE L2 2040 3253 -60 1887 145 10 7 chr3 215023505 215023802 -3013356 - AluSx SINE Alu -14 298 1 619 202 0 24 chr3 215024148 215024272 -3012886 - FLAM_C SINE Alu -22 121 1 240 163 0 0 chr3 215024941 215024984 -3012174 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 2342 95 3 0 chr3 215024984 215025288 -3011870 - AluSp SINE Alu -8 305 1 28 0 0 0 chr3 215025319 215025347 -3011811 + AT_rich Low_complexity Low_complexity 1 28 0 737 149 0 95 chr3 215025701 215025849 -3011309 + AluJo SINE Alu 1 134 -178 303 47 0 0 chr3 215026114 215026157 -3011001 - MADE1 DNA Mariner -37 43 1 212 342 217 0 chr3 215026184 215026336 -3010822 - MIR3 SINE MIR -9 199 15 1988 113 29 0 chr3 215026503 215026822 -3010336 - AluSp SINE Alu 0 327 1 245 88 0 0 chr3 215026865 215026899 -3010259 + U2 snRNA snRNA 2 35 -153 317 265 154 37 chr3 215027403 215027565 -3009593 - MIR SINE MIR -41 221 41 25 31 0 0 chr3 215028233 215028265 -3008893 + AT_rich Low_complexity Low_complexity 1 32 0 2433 97 3 0 chr3 215028370 215028680 -3008478 - AluSx SINE Alu -1 311 1 2282 112 0 0 chr3 215028913 215029217 -3007941 - AluSq SINE Alu -9 304 1 1359 235 30 3 chr3 215029463 215029791 -3007367 - MER58B DNA MER1_type -4 337 1 24 85 0 0 chr3 215029886 215029945 -3007213 + AT_rich Low_complexity Low_complexity 1 59 0 21 0 0 0 chr3 215030247 215030268 -3006890 + AT_rich Low_complexity Low_complexity 1 21 0 937 173 8 123 chr3 215030268 215030511 -3006647 - AluJo SINE Alu -30 282 68 724 174 0 0 chr3 215030519 215030651 -3006507 - FLAM_C SINE Alu 0 133 2 292 286 32 48 chr3 215031249 215031438 -3005720 - L1ME4a LINE L1 -198 5923 5738 1508 149 114 0 chr3 215031863 215032125 -3005033 - AluJo SINE Alu -14 298 7 2282 101 3 3 chr3 215033177 215033473 -3003685 - AluSx SINE Alu -16 296 1 553 250 66 7 chr3 215033487 215033623 -3003535 - MIR SINE MIR -91 171 28 2274 108 16 3 chr3 215033660 215033966 -3003192 + AluSp SINE Alu 1 310 -3 23 54 0 0 chr3 215034389 215034426 -3002732 + AT_rich Low_complexity Low_complexity 1 37 0 369 195 47 16 chr3 215034518 215034622 -3002536 - MER5A DNA MER1_type -77 112 4 444 270 24 68 chr3 215034801 215034974 -3002184 - MIR SINE MIR -50 212 52 2128 101 3 7 chr3 215034974 215035272 -3001886 - AluSx SINE Alu -15 297 1 444 270 24 68 chr3 215035272 215035316 -3001842 - MIR SINE MIR -210 52 8 22 0 0 0 chr3 215035398 215035420 -3001738 + AT_rich Low_complexity Low_complexity 1 22 0 200 33 0 33 chr3 215035479 215035509 -3001649 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2261 100 0 25 chr3 215036127 215036446 -3000712 - AluSx SINE Alu -1 311 1 1196 242 20 0 chr3 215037119 215037367 -2999791 + MIR SINE MIR 3 255 -7 180 238 71 0 chr3 215037368 215037410 -2999748 + L2 LINE L2 3138 3182 -90 1137 108 7 0 chr3 215037430 215037578 -2999580 + AluSq/x SINE Alu 1 149 -164 417 113 0 0 chr3 215037600 215037662 -2999496 + Alu SINE Alu 238 299 -13 299 279 0 0 chr3 215037825 215037893 -2999265 + L2 LINE L2 3201 3268 -4 2698 53 31 6 chr3 215038370 215038728 -2998430 - L1PA8 LINE L1 0 6172 5806 2468 148 31 0 chr3 215038784 215039236 -2997922 - L1MB7 LINE L1 -20 6164 5699 648 132 58 50 chr3 215039921 215040042 -2997116 - FLAM_C SINE Alu -10 133 12 250 372 42 23 chr3 215040044 215040259 -2996899 - MIR SINE MIR -43 219 1 2149 125 7 0 chr3 215040444 215040739 -2996419 - AluSx SINE Alu -15 297 1 1141 294 72 18 chr3 215040821 215041375 -2995783 - L1MC4a LINE L1 -1908 5900 5317 662 304 125 35 chr3 215041416 215042008 -2995150 - L1MC4a LINE L1 -872 5274 4630 304 232 91 20 chr3 215042128 215042227 -2994931 - MER103 DNA DNA 0 166 61 191 111 0 28 chr3 215042634 215042670 -2994488 + (GGAA)n Simple_repeat Simple_repeat 3 37 0 251 206 44 15 chr3 215042682 215042750 -2994408 + GA-rich Low_complexity Low_complexity 4 73 0 2360 104 0 0 chr3 215043054 215043361 -2993797 - AluSq SINE Alu -6 307 1 2095 119 0 0 chr3 215043731 215044017 -2993141 + AluSx SINE Alu 19 304 -8 485 257 104 59 chr3 215044167 215044610 -2992548 - MLT1H LTR MaLR -4 545 83 323 285 100 23 chr3 215044703 215044833 -2992325 - MER5B DNA MER1_type -37 141 2 1058 185 11 0 chr3 215044851 215045035 -2992123 + MER5A DNA MER1_type 4 189 0 636 233 19 13 chr3 215045128 215045287 -2991871 + MER58B DNA MER1_type 176 335 -6 445 250 0 10 chr3 215045442 215045546 -2991612 + MER5B DNA MER1_type 76 178 0 305 277 134 17 chr3 215045564 215045683 -2991475 - MER5A DNA MER1_type -30 159 27 363 217 208 0 chr3 215045684 215045804 -2991354 - MER5B DNA MER1_type -33 145 1 2234 112 0 13 chr3 215046018 215046322 -2990836 + AluSx SINE Alu 1 300 -12 434 151 27 0 chr3 215046583 215046656 -2990502 - AluJ/FRAM SINE Alu -16 296 222 796 181 6 30 chr3 215046739 215046752 -2990406 - AluSg/x SINE Alu -14 298 286 4856 119 38 11 chr3 215046752 215047565 -2989593 - L1MA3 LINE L1 -5 6300 5466 207 0 0 0 chr3 215047570 215047593 -2989565 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 796 181 6 30 chr3 215047593 215047739 -2989419 - AluSg/x SINE Alu -30 282 137 10075 157 51 80 chr3 215047740 215048516 -2988642 - L1MA3 LINE L1 -743 5403 4606 249 33 0 0 chr3 215048516 215048546 -2988612 + (TG)n Simple_repeat Simple_repeat 1 30 0 10075 157 51 80 chr3 215048546 215048625 -2988533 - L1MA3 LINE L1 -1540 4606 4526 1384 101 6 0 chr3 215048625 215048803 -2988355 - AluSp SINE Alu -134 179 1 10075 157 51 80 chr3 215048803 215049827 -2987331 - L1MA3 LINE L1 -1620 4526 3474 2342 85 0 13 chr3 215049827 215050133 -2987025 - AluSq SINE Alu -11 302 1 10075 157 51 80 chr3 215050133 215050700 -2986458 - L1MA3 LINE L1 -2672 3474 2892 2207 138 0 3 chr3 215050700 215051011 -2986147 - AluSx SINE Alu -2 310 1 10075 157 51 80 chr3 215051011 215051335 -2985823 - L1MA3 LINE L1 -3254 2892 2629 2241 115 6 13 chr3 215051335 215051649 -2985509 - AluSx SINE Alu 0 312 1 10075 157 51 80 chr3 215051649 215051797 -2985361 - L1MA3 LINE L1 -3517 2629 2478 201 94 0 0 chr3 215053503 215053535 -2983623 + (TG)n Simple_repeat Simple_repeat 1 32 0 2038 128 2 28 chr3 215054157 215054548 -2982610 - L1M3 LINE L1 -469 5705 5305 1633 191 3 36 chr3 215054548 215054852 -2982306 - AluJo SINE Alu -18 294 1 2038 128 2 28 chr3 215054852 215054879 -2982279 - L1M3 LINE L1 -869 5305 5279 234 0 0 0 chr3 215054879 215054905 -2982253 + (TTG)n Simple_repeat Simple_repeat 1 26 0 2038 128 2 28 chr3 215054905 215055191 -2981967 - L1M3 LINE L1 -895 5279 5010 2135 127 0 0 chr3 215055486 215055785 -2981373 - AluSx SINE Alu -13 299 1 2333 90 0 3 chr3 215055843 215056153 -2981005 - AluSc SINE Alu 0 309 1 344 86 0 35 chr3 215056250 215056308 -2980850 + (TCCC)n Simple_repeat Simple_repeat 3 58 0 233 262 0 0 chr3 215056904 215056919 -2980239 + MIR3 SINE MIR 102 116 -92 2048 161 0 0 chr3 215056919 215057223 -2979935 + AluJb SINE Alu 1 304 -8 233 262 0 0 chr3 215057223 215057268 -2979890 + MIR3 SINE MIR 115 162 -46 21 0 0 0 chr3 215057274 215057295 -2979863 + AT_rich Low_complexity Low_complexity 1 21 0 722 159 0 0 chr3 215057794 215057920 -2979238 - AluSg/x SINE Alu -5 307 182 1971 128 21 0 chr3 215057968 215058250 -2978908 - AluSx SINE Alu -24 288 1 1848 148 28 14 chr3 215058549 215058832 -2978326 - AluJo SINE Alu -25 287 1 2229 114 7 0 chr3 215059144 215059451 -2977707 - AluSx SINE Alu -3 309 1 838 73 0 0 chr3 215059521 215059655 -2977503 + AluY SINE Alu 175 308 0 1860 113 4 14 chr3 215059960 215060235 -2976923 - AluSx SINE Alu -18 294 23 1938 129 32 0 chr3 215060433 215060712 -2976446 - AluSx SINE Alu -23 289 2 28 0 0 0 chr3 215061106 215061134 -2976024 + AT_rich Low_complexity Low_complexity 1 28 0 449 147 80 0 chr3 215061134 215061209 -2975949 - AluJ/FLAM SINE Alu -231 81 1 261 0 0 0 chr3 215061345 215061374 -2975784 + (T)n Simple_repeat Simple_repeat 1 29 0 1822 140 17 30 chr3 215061626 215061926 -2975232 + AluSx SINE Alu 1 296 -16 6287 153 24 14 chr3 215061929 215062612 -2974546 + L1P4 LINE L1 4052 4727 -1434 2207 119 3 7 chr3 215062612 215062915 -2974243 - AluSq SINE Alu -11 302 1 6287 153 24 14 chr3 215062915 215063958 -2973200 + L1P4 LINE L1 4727 5788 -373 18071 161 50 15 chr3 215064059 215064667 -2972491 - L1 LINE L1 -3660 3905 3320 2477 59 0 0 chr3 215064667 215064970 -2972188 + AluY SINE Alu 1 303 -8 18071 161 50 15 chr3 215064970 215066323 -2970835 - L1 LINE L1 -4245 3320 2015 1976 141 26 35 chr3 215066323 215066700 -2970458 + THE1C LTR MaLR 1 374 -1 18071 161 50 15 chr3 215066700 215068497 -2968661 - L1 LINE L1 -5550 2015 15 222 118 0 0 chr3 215069135 215069169 -2967989 + (A)n Simple_repeat Simple_repeat 1 34 0 1619 171 66 4 chr3 215069288 215069562 -2967596 + AluSx SINE Alu 1 291 -21 1472 133 43 5 chr3 215069662 215070057 -2967101 + L1PA12 LINE L1 5052 5458 -710 3840 78 19 9 chr3 215070066 215070601 -2966557 + L1PA12 LINE L1 5629 6168 0 480 244 137 60 chr3 215070671 215071057 -2966101 - L1ME1 LINE L1 -5 6161 5746 777 184 20 0 chr3 215071058 215071205 -2965953 - MLT1F1 LTR MaLR 0 542 393 * 900 202 12 132 chr3 215071203 215071335 -2965823 - MLT1F1 LTR MaLR -279 288 217 2036 118 4 0 chr3 215071335 215071607 -2965551 - AluSx SINE Alu -11 301 29 900 202 12 132 chr3 215071607 215071801 -2965357 - MLT1F1 LTR MaLR -350 217 1 394 257 26 13 chr3 215071801 215071953 -2965205 - L1ME1 LINE L1 -412 5752 5599 31 44 0 0 chr3 215072007 215072052 -2965106 + AT_rich Low_complexity Low_complexity 1 45 0 1978 171 30 3 chr3 215072052 215072391 -2964767 - MER7A DNA MER2_type 0 346 1 1702 205 181 23 chr3 215072448 215072671 -2964487 - L1ME1 LINE L1 -592 5574 5387 2011 97 17 10 chr3 215072671 215072947 -2964211 + AluY SINE Alu 1 281 -30 405 0 0 0 chr3 215072947 215072992 -2964166 + (CA)n Simple_repeat Simple_repeat 1 45 0 2011 97 17 10 chr3 215072992 215073005 -2964153 + AluY SINE Alu 281 292 -19 1702 205 181 23 chr3 215073005 215073017 -2964141 - L1ME1 LINE L1 -779 5387 5378 2157 100 3 20 chr3 215073017 215073316 -2963842 + AluSx SINE Alu 1 294 -18 1702 205 181 23 chr3 215073316 215073764 -2963394 - L1ME1 LINE L1 -788 5378 5002 1567 172 55 10 chr3 215073764 215074054 -2963104 - AluJb SINE Alu -7 305 3 1702 205 181 23 chr3 215074054 215074325 -2962833 - L1ME1 LINE L1 -1164 5002 4511 2094 232 59 23 chr3 215074796 215074931 -2962227 - L1ME1 LINE L1 -1623 4523 4394 2212 86 7 3 chr3 215074931 215075233 -2961925 - AluSp SINE Alu -10 303 1 2094 232 59 23 chr3 215075233 215075796 -2961362 - L1ME1 LINE L1 -1752 4394 3800 27 49 0 0 chr3 215075912 215075953 -2961205 + AT_rich Low_complexity Low_complexity 1 41 0 1616 197 3 31 chr3 215076232 215076552 -2960606 - AluJo SINE Alu -1 311 1 993 253 25 47 chr3 215076565 215076929 -2960229 - L1ME2 LINE L1 -10 6154 5799 1505 244 124 16 chr3 215077155 215077663 -2959495 - L1ME1 LINE L1 -18 6148 5586 644 269 54 23 chr3 215077703 215078056 -2959102 - L1ME1 LINE L1 -2686 3460 3097 21 36 0 0 chr3 215079270 215079298 -2957860 + AT_rich Low_complexity Low_complexity 1 28 0 2159 73 28 3 chr3 215079458 215079747 -2957411 + AluSp SINE Alu 1 296 -17 22 35 0 0 chr3 215079909 215079938 -2957220 + AT_rich Low_complexity Low_complexity 1 29 0 1401 192 3 59 chr3 215080025 215080332 -2956826 - AluJo SINE Alu -2 310 21 820 174 37 19 chr3 215080639 215080800 -2956358 + AluJo SINE Alu 85 248 -64 340 335 16 63 chr3 215080814 215081005 -2956153 + MER5A DNA MER1_type 4 185 -4 2311 95 0 7 chr3 215081268 215081564 -2955594 - AluSc SINE Alu -15 294 1 326 274 156 38 chr3 215081997 215082124 -2955034 - L1ME4a LINE L1 -223 5898 5787 1923 153 3 6 chr3 215082124 215082451 -2954707 - L1PB3 LINE L1 0 6154 5829 326 274 156 38 chr3 215082451 215082560 -2954598 - L1ME4a LINE L1 -334 5787 5634 2553 50 3 0 chr3 215082655 215082956 -2954202 + AluY SINE Alu 1 302 -9 25 31 0 0 chr3 215084327 215084359 -2952799 + AT_rich Low_complexity Low_complexity 1 32 0 245 271 43 0 chr3 215084369 215084439 -2952719 + L2 LINE L2 3199 3271 -1 56 55 0 0 chr3 215084759 215084850 -2952308 + AT_rich Low_complexity Low_complexity 1 91 0 2293 108 0 0 chr3 215085023 215085329 -2951829 - AluSx SINE Alu -6 306 1 1600 125 6 113 chr3 215085658 215085986 -2951172 + AluJo SINE Alu 1 293 -19 544 254 164 85 chr3 215085990 215086532 -2950626 - L2 LINE L2 -1 3312 2647 2166 110 7 0 chr3 215086532 215086832 -2950326 + AluSp SINE Alu 1 302 -11 544 254 164 85 chr3 215086832 215087030 -2950128 - L2 LINE L2 -666 2647 2466 2436 80 0 10 chr3 215088269 215088580 -2948578 + AluSq SINE Alu 1 308 -5 699 259 134 89 chr3 215088847 215089177 -2947981 - L1ME4a LINE L1 -19 6102 5788 1332 238 40 3 chr3 215089177 215089501 -2947657 - MER58B DNA MER1_type -1 340 5 699 259 134 89 chr3 215089501 215089956 -2947202 - L1ME4a LINE L1 -333 5788 5282 261 167 115 13 chr3 215090122 215090200 -2946958 - L1MB7 LINE L1 -54 6130 6045 21 71 0 0 chr3 215090877 215090919 -2946239 + AT_rich Low_complexity Low_complexity 1 42 0 1642 176 3 35 chr3 215090972 215091262 -2945896 + AluJb SINE Alu 1 281 -31 25 31 0 0 chr3 215091262 215091294 -2945864 + AT_rich Low_complexity Low_complexity 1 32 0 2078 130 24 29 chr3 215091523 215091900 -2945258 - THE1C LTR MaLR 0 375 1 2431 71 0 0 chr3 215092321 215092618 -2944540 - AluY SINE Alu -12 299 3 1903 130 67 0 chr3 215092861 215093145 -2944013 + AluSx SINE Alu 2 304 -8 352 206 76 0 chr3 215093373 215093465 -2943693 - MLT1J LTR MaLR 0 511 413 1249 285 40 0 chr3 215093521 215093823 -2943335 - MLT1J LTR MaLR -197 314 1 207 340 142 9 chr3 215094137 215094243 -2942915 - L2 LINE L2 -652 2662 2543 180 276 254 22 chr3 215094258 215094439 -2942719 - L2 LINE L2 -930 2384 2162 436 318 121 25 chr3 215094629 215095117 -2942041 - L2 LINE L2 -1254 2060 1526 2506 70 0 3 chr3 215095363 215095675 -2941483 - AluY SINE Alu 0 311 1 25 51 0 0 chr3 215096159 215096198 -2940960 + AT_rich Low_complexity Low_complexity 1 39 0 27 29 0 0 chr3 215096501 215096535 -2940623 + AT_rich Low_complexity Low_complexity 1 34 0 1912 125 0 4 chr3 215096546 215096825 -2940333 - AluSg SINE Alu -32 278 1 242 200 0 0 chr3 215098620 215098680 -2938478 - L1MA8 LINE L1 0 6291 6232 21 36 0 0 chr3 215098905 215098933 -2938225 + AT_rich Low_complexity Low_complexity 1 28 0 243 0 0 0 chr3 215099033 215099060 -2938098 + (A)n Simple_repeat Simple_repeat 1 27 0 633 278 96 47 chr3 215099151 215099536 -2937622 - L1ME LINE L1 -458 5706 5303 394 284 122 73 chr3 215099574 215099711 -2937447 - L1ME LINE L1 -983 5163 5034 216 0 0 0 chr3 215099711 215099735 -2937423 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2013 103 0 0 chr3 215099739 215100000 -2937158 - AluSx SINE Alu -46 266 6 394 284 122 73 chr3 215100000 215100413 -2936745 - L1ME LINE L1 -1114 5032 4641 2655 84 22 15 chr3 215100413 215100816 -2936342 - L1MA2 LINE L1 0 6304 5899 394 284 122 73 chr3 215100816 215101384 -2935774 - L1ME LINE L1 -1505 4641 4037 2226 120 3 0 chr3 215102603 215102903 -2934255 + AluSx SINE Alu 3 303 -9 1980 129 32 0 chr3 215103018 215103297 -2933861 + AluSx SINE Alu 19 306 -6 436 318 135 21 chr3 215103343 215103683 -2933475 - L1ME4a LINE L1 -143 5978 5600 1930 147 50 17 chr3 215104264 215104625 -2932533 - THE1C LTR MaLR 0 375 3 9795 126 9 36 chr3 215104625 215106246 -2930912 - THE1C-int LTR MaLR 0 1580 4 1809 167 56 11 chr3 215106249 215106608 -2930550 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr3 215106818 215106839 -2930319 + AT_rich Low_complexity Low_complexity 1 21 0 2306 87 27 3 chr3 215107320 215107619 -2929539 + AluSx SINE Alu 5 310 -2 1879 151 4 7 chr3 215107818 215108122 -2929036 + AluSx SINE Alu 5 307 0 329 321 37 9 chr3 215108839 215108948 -2928210 - MIR SINE MIR -60 148 37 1646 153 14 24 chr3 215109192 215109479 -2927679 + AluJb SINE Alu 1 284 -28 2221 108 0 10 chr3 215109944 215110249 -2926909 + AluSx SINE Alu 1 302 -10 268 67 0 22 chr3 215110259 215110304 -2926854 + L1MA3 LINE L1 6262 6305 0 25 31 0 0 chr3 215110533 215110565 -2926593 + AT_rich Low_complexity Low_complexity 1 32 0 971 174 0 0 chr3 215111883 215112038 -2925120 + FRAM SINE Alu 1 155 -21 58 47 0 0 chr3 215112497 215112583 -2924575 + AT_rich Low_complexity Low_complexity 1 86 0 2488 87 0 0 chr3 215112677 215112989 -2924169 + AluSx SINE Alu 1 312 0 2207 135 0 0 chr3 215113117 215113429 -2923729 + AluSx SINE Alu 1 312 0 2225 96 0 13 chr3 215114953 215115254 -2921904 - AluSx SINE Alu -15 297 1 1013 123 53 0 chr3 215115997 215116168 -2920990 - L1MA4 LINE L1 -6 6294 6115 344 266 37 37 chr3 215116913 215117022 -2920136 - MIR SINE MIR -7 255 147 22 56 0 0 chr3 215117399 215117435 -2919723 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 215117647 215117668 -2919490 + AT_rich Low_complexity Low_complexity 1 21 0 201 208 0 38 chr3 215118141 215118194 -2918964 + (CATTT)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr3 215118294 215118315 -2918843 + AT_rich Low_complexity Low_complexity 1 21 0 787 220 129 22 chr3 215118857 215119173 -2917985 - HAL1 LINE L1 -628 1879 1508 589 224 75 5 chr3 215119220 215119421 -2917737 - HAL1 LINE L1 -1287 1220 1006 356 281 104 30 chr3 215119436 215119600 -2917558 + MER5B DNA MER1_type 3 178 0 682 233 215 37 chr3 215119613 215120046 -2917112 - HAL1 LINE L1 -1660 847 338 2245 118 0 13 chr3 215120320 215120634 -2916524 - AluSg SINE Alu 0 310 1 1125 189 57 105 chr3 215120745 215120896 -2916262 - AluJo SINE Alu -30 282 150 198 118 0 0 chr3 215120896 215120930 -2916228 + (TATG)n Simple_repeat Simple_repeat 1 34 0 1125 189 57 105 chr3 215120930 215121074 -2916084 - AluJo SINE Alu -162 150 1 195 100 0 0 chr3 215121078 215121108 -2916050 + (TATG)n Simple_repeat Simple_repeat 1 30 0 1429 167 17 59 chr3 215121111 215121256 -2915902 - AluJo SINE Alu -36 276 127 192 40 0 0 chr3 215121256 215121281 -2915877 + (TATG)n Simple_repeat Simple_repeat 2 26 0 1429 167 17 59 chr3 215121281 215121293 -2915865 - AluJo SINE Alu -185 127 116 1898 132 0 31 chr3 215121293 215121580 -2915578 - AluSx SINE Alu -32 280 3 1429 167 17 59 chr3 215121580 215121709 -2915449 - AluJo SINE Alu -196 116 1 191 296 130 9 chr3 215122111 215122219 -2914939 + L2 LINE L2 3152 3272 -41 2665 48 7 3 chr3 215123128 215123438 -2913720 + AluY SINE Alu 1 311 0 1563 207 10 7 chr3 215123484 215123779 -2913379 - AluJb SINE Alu -16 296 1 2477 93 7 0 chr3 215124169 215124479 -2912679 + AluSx SINE Alu 1 312 0 2368 85 0 16 chr3 215124650 215124957 -2912201 - AluY SINE Alu -9 302 1 1656 145 100 0 chr3 215124957 215125226 -2911932 - AluSx SINE Alu -16 296 1 2400 93 3 0 chr3 215125583 215125883 -2911275 + AluSp SINE Alu 1 301 -12 2078 150 0 7 chr3 215125961 215126261 -2910897 + AluSx SINE Alu 6 303 -9 20691 27 5 0 chr3 215129374 215131939 -2905219 - L1P LINE L1 -1860 4286 1710 996 9 0 0 chr3 215131939 215132046 -2905112 - U6 snRNA snRNA 0 107 1 330 346 59 7 chr3 215132937 215133090 -2904068 + MIR SINE MIR 102 262 0 261 253 46 0 chr3 215133107 215133194 -2903964 - MER103 DNA DNA -73 93 3 2533 87 3 0 chr3 215133270 215133580 -2903578 + AluSp SINE Alu 2 312 -1 1967 151 18 27 chr3 215134015 215134352 -2902806 - MER1B DNA MER1_type 0 337 4 266 304 108 10 chr3 215134358 215134460 -2902698 + L3 LINE CR1 1232 1343 -234 915 273 59 36 chr3 215135002 215135339 -2901819 + L2 LINE L2 2968 3312 -1 2326 92 3 0 chr3 215135427 215135721 -2901437 - AluSx SINE Alu -17 295 1 1305 208 103 105 chr3 215138671 215139214 -2897944 + MLT1F1 LTR MaLR 1 567 0 216 294 47 12 chr3 215139228 215139313 -2897845 - L2 LINE L2 -167 3105 3018 619 248 56 62 chr3 215139847 215140056 -2897102 - L1MC5 LINE L1 -37 7924 7716 2224 107 10 0 chr3 215140056 215140346 -2896812 - AluSx SINE Alu -19 293 1 619 248 56 62 chr3 215140346 215140459 -2896699 - L1MC5 LINE L1 -245 7716 7604 481 100 8 169 chr3 215140562 215140607 -2896551 - L1MC4 LINE L1 -817 7225 7174 2335 91 0 0 chr3 215140607 215140893 -2896265 + AluSq SINE Alu 1 286 -27 481 100 8 169 chr3 215140893 215140977 -2896181 - L1MC4 LINE L1 -868 7174 7117 247 307 166 12 chr3 215141386 215141549 -2895609 + MIR3 SINE MIR 14 201 -7 244 260 20 0 chr3 215141681 215141731 -2895427 - L2 LINE L2 -31 3282 3232 191 225 0 0 chr3 215142003 215142043 -2895115 - L2 LINE L2 -12 3260 3221 293 298 28 57 chr3 215142062 215142203 -2894955 - MIR3 SINE MIR -58 150 14 680 225 116 76 chr3 215142254 215142793 -2894365 - MLT1F1 LTR MaLR -6 561 2 226 146 36 55 chr3 215142824 215142879 -2894279 + Tigger5 DNA MER2_type 2 55 -2268 357 261 0 11 chr3 215142889 215142977 -2894181 + Tigger5 DNA MER2_type 2237 2323 0 342 246 118 36 chr3 215143105 215143168 -2893990 + L1MC4 LINE L1 6583 6639 -1403 2200 79 57 0 chr3 215143168 215143448 -2893710 - AluSp SINE Alu -17 296 1 342 246 118 36 chr3 215143448 215143494 -2893664 + L1MC4 LINE L1 6639 6701 -1341 717 178 16 0 chr3 215144061 215144190 -2892968 + FLAM_C SINE Alu 2 132 -1 180 0 0 0 chr3 215144921 215144941 -2892217 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 810 272 176 44 chr3 215145829 215146237 -2890921 - L2 LINE L2 -1 3312 2851 1796 195 3 0 chr3 215147643 215147935 -2889223 - AluJb SINE Alu -19 293 1 271 188 38 33 chr3 215147939 215148081 -2889077 + CT-rich Low_complexity Low_complexity 1 142 0 682 198 24 0 chr3 215148084 215148210 -2888948 - FLAM_A SINE Alu -4 129 1 260 211 28 56 chr3 215148221 215148292 -2888866 + L2 LINE L2 3158 3226 -87 353 359 123 14 chr3 215148677 215148897 -2888261 - L2 LINE L2 -824 2490 2247 373 275 50 45 chr3 215148939 215149277 -2887881 + MLT1J LTR MaLR 72 409 0 1533 139 0 0 chr3 215149360 215149569 -2887589 - AluJb SINE Alu -18 294 86 281 357 84 59 chr3 215150422 215150660 -2886498 + L2 LINE L2 3029 3272 0 * 302 372 92 20 chr3 215150629 215150922 -2886236 + L3 LINE CR1 579 892 -685 1642 166 29 57 chr3 215150941 215151255 -2885903 + AluJo SINE Alu 1 305 -7 511 217 9 2 chr3 215151259 215151387 -2885771 + L1ME2 LINE L1 6035 6164 -2 1278 189 16 42 chr3 215151408 215151779 -2885379 + LTR52 LTR ERVL 11 419 -2 465 328 141 63 chr3 215151790 215152342 -2884816 + L3 LINE CR1 911 1505 -72 2533 68 0 3 chr3 215152357 215152666 -2884492 + AluSg SINE Alu 1 308 -2 507 222 68 132 chr3 215154821 215155087 -2882071 - MIR SINE MIR -10 252 4 226 207 115 35 chr3 215155301 215155388 -2881770 - MIR SINE MIR -2 260 167 580 304 15 25 chr3 215155422 215155620 -2881538 + MIR SINE MIR 70 262 0 285 373 63 0 chr3 215156273 215156415 -2880743 - MIR SINE MIR -56 206 56 1849 139 75 33 chr3 215156460 215156820 -2880338 + THE1C LTR MaLR 1 375 0 736 125 16 0 chr3 215158357 215158485 -2878673 + GA-rich Low_complexity Low_complexity 3 132 0 185 156 22 44 chr3 215159434 215159479 -2877679 + L2 LINE L2 2713 2756 -558 581 318 58 69 chr3 215159615 215160136 -2877022 + L2 LINE L2 2713 3271 -1 1474 106 5 0 chr3 215160194 215160383 -2876775 - AluSg/x SINE Alu -14 298 109 198 0 0 0 chr3 215160822 215160844 -2876314 + (TA)n Simple_repeat Simple_repeat 1 22 0 2382 86 30 0 chr3 215160845 215161149 -2876009 - AluSq SINE Alu 0 313 1 2277 94 0 20 chr3 215161294 215161593 -2875565 - AluY SINE Alu -9 302 10 1878 140 35 0 chr3 215161606 215161891 -2875267 - AluSx SINE Alu -14 298 4 2311 103 3 0 chr3 215162511 215162811 -2874347 - AluSg SINE Alu -9 301 1 440 238 69 20 chr3 215163473 215163675 -2873483 - L1MC/D LINE L1 -2343 5465 5254 836 146 0 0 chr3 215163765 215163888 -2873270 + FLAM_C SINE Alu 1 123 -20 2438 80 0 0 chr3 215164688 215164977 -2872181 - AluSg SINE Alu -21 289 1 307 260 31 21 chr3 215165726 215165822 -2871336 - MER5B DNA MER1_type 0 178 82 289 273 20 50 chr3 215165848 215165947 -2871211 - MER5B DNA MER1_type -78 100 5 498 285 151 0 chr3 215166463 215166649 -2870509 - MIR SINE MIR -41 221 8 419 277 17 0 chr3 215166824 215166943 -2870215 - MER103 DNA DNA -43 123 3 247 294 54 11 chr3 215167025 215167117 -2870041 - MIR3 SINE MIR -52 156 61 2482 77 0 0 chr3 215167246 215167544 -2869614 - AluY SINE Alu -13 298 1 300 214 100 0 chr3 215168160 215168230 -2868928 + MIR SINE MIR 4 80 -182 532 268 119 0 chr3 215169031 215169199 -2867959 - L2 LINE L2 -1293 2021 1834 2416 85 0 10 chr3 215169413 215169719 -2867439 - AluSx SINE Alu -9 303 1 1067 212 10 0 chr3 215170596 215170799 -2866359 - MER3 DNA MER1_type -4 205 1 287 260 14 0 chr3 215171570 215171643 -2865515 - MIR SINE MIR 0 262 189 3507 209 48 47 chr3 215171801 215173572 -2863586 - L1ME1 LINE L1 -5 6230 4283 2265 107 0 7 chr3 215173572 215173870 -2863288 - AluSx SINE Alu -16 296 1 3507 209 48 47 chr3 215173870 215174333 -2862825 - L1ME1 LINE L1 -1952 4283 3822 247 94 109 78 chr3 215174363 215174427 -2862731 - L1ME1 LINE L1 -2502 3713 3648 1907 147 3 7 chr3 215174433 215174732 -2862426 - AluSx SINE Alu -14 298 1 1972 216 49 19 chr3 215174739 215175267 -2861891 - L1ME1 LINE L1 -3382 2833 2290 2407 136 57 134 chr3 215175268 215175738 -2861420 - Tigger2 DNA MER2_type 0 2718 1 1240 263 43 32 chr3 215175761 215176362 -2860796 - L1ME1 LINE L1 -4086 2310 1703 198 0 0 0 chr3 215177924 215177946 -2859212 + (TA)n Simple_repeat Simple_repeat 1 22 0 2233 86 30 0 chr3 215177947 215178251 -2858907 - AluSq SINE Alu 0 313 1 2132 94 0 20 chr3 215178396 215178695 -2858463 - AluY SINE Alu -9 302 10 1732 140 35 0 chr3 215178708 215178993 -2858165 - AluSx SINE Alu -14 298 4 717 174 11 51 chr3 215179566 215179613 -2857545 - L1MB3 LINE L1 -1 6182 6135 2224 106 0 0 chr3 215179613 215179916 -2857242 - AluSx SINE Alu -9 303 1 717 174 11 51 chr3 215179916 215180046 -2857112 - L1MB3 LINE L1 -48 6135 6012 22 0 0 0 chr3 215180567 215180589 -2856569 + AT_rich Low_complexity Low_complexity 1 22 0 821 165 73 37 chr3 215181534 215181680 -2855478 - AluJo SINE Alu -22 290 151 518 0 16 0 chr3 215181680 215181742 -2855416 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 2114 105 0 7 chr3 215181742 215182027 -2855131 - AluSx SINE Alu -29 283 1 821 165 73 37 chr3 215182027 215182043 -2855115 - AluJo SINE Alu -160 152 121 1294 196 29 52 chr3 215182158 215182464 -2854694 - AluJo SINE Alu -3 299 1 2247 66 7 20 chr3 215182732 215183037 -2854121 - AluY SINE Alu -10 301 1 1149 153 39 5 chr3 215183479 215183682 -2853476 + MER2 DNA MER2_type 1 210 -135 1957 87 40 0 chr3 215183704 215183980 -2853178 - AluSx SINE Alu -25 287 1 273 191 0 0 chr3 215184025 215184072 -2853086 + MER2 DNA MER2_type 268 314 -31 705 234 101 62 chr3 215184188 215184397 -2852761 - MIR SINE MIR -44 218 2 2201 84 17 0 chr3 215184438 215184734 -2852424 - AluSp SINE Alu -12 301 1 861 200 6 0 chr3 215184952 215185122 -2852036 + AluJo SINE Alu 15 185 -127 21 0 0 0 chr3 215185137 215185158 -2852000 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr3 215189978 215190004 -2847154 + AT_rich Low_complexity Low_complexity 1 26 0 29 60 0 0 chr3 215190670 215190720 -2846438 + AT_rich Low_complexity Low_complexity 1 50 0 2400 65 0 0 chr3 215191125 215191432 -2845726 - AluY SINE Alu -4 307 1 2268 92 0 3 chr3 215192061 215192367 -2844791 - AluSx SINE Alu -7 305 1 696 150 0 95 chr3 215192388 215192535 -2844623 - FLAM_C SINE Alu -10 133 1 2081 116 3 0 chr3 215194459 215194760 -2842398 - AluSx SINE Alu -10 302 1 222 226 0 19 chr3 215196891 215196944 -2840214 - MIR SINE MIR -126 82 31 280 274 68 8 chr3 215198435 215198480 -2838678 - L1ME4a LINE L1 -59 6062 6021 826 214 88 5 chr3 215198480 215198672 -2838486 - MER3 DNA MER1_type -1 208 1 280 274 68 8 chr3 215198672 215198743 -2838415 - L1ME4a LINE L1 -100 6021 5939 426 244 218 10 chr3 215198829 215199132 -2838026 - L1MC5 LINE L1 -116 7845 7480 832 191 13 0 chr3 215199142 215199294 -2837864 - FRAM SINE Alu -9 157 4 1015 172 0 0 chr3 215199423 215199592 -2837566 - AluSq SINE Alu -3 310 142 1095 121 0 0 chr3 215199599 215199756 -2837402 - AluSq SINE Alu -15 298 142 2274 80 0 3 chr3 215199763 215200062 -2837096 - AluSq SINE Alu -15 298 1 271 346 47 63 chr3 215200171 215200425 -2836733 - L2 LINE L2 -17 3255 3006 245 214 125 0 chr3 215200671 215200727 -2836431 + MIR SINE MIR 43 105 -157 22 56 0 0 chr3 215201333 215201369 -2835789 + GC_rich Low_complexity Low_complexity 1 36 0 27 49 0 0 chr3 215201673 215201714 -2835444 + GC_rich Low_complexity Low_complexity 1 41 0 212 220 254 0 chr3 215203215 215203274 -2833884 + MER5A DNA MER1_type 110 183 -6 1458 166 13 39 chr3 215203946 215204110 -2833048 - AluSq SINE Alu -13 300 146 2310 89 0 3 chr3 215204110 215204414 -2832744 - AluSq SINE Alu -10 303 1 1458 166 13 39 chr3 215204414 215204556 -2832602 - AluSq SINE Alu -167 146 2 340 346 97 48 chr3 215204715 215204984 -2832174 + L2 LINE L2 2939 3220 -52 429 228 30 0 chr3 215205696 215205797 -2831361 + MER5A DNA MER1_type 35 138 -51 190 314 114 0 chr3 215205852 215205957 -2831201 + L2 LINE L2 3142 3258 -14 2144 100 3 3 chr3 215206039 215206348 -2830810 - AluSc SINE Alu 0 309 1 716 283 21 13 chr3 215206583 215206820 -2830338 - MLT1J LTR MaLR -12 499 261 190 244 47 70 chr3 215207077 215207163 -2829995 + L2 LINE L2 3016 3099 -214 2109 113 10 0 chr3 215207173 215207474 -2829684 - AluSx SINE Alu -8 304 1 1384 187 36 26 chr3 215207474 215207779 -2829379 - AluJo SINE Alu -4 308 1 901 275 55 53 chr3 215207813 215208228 -2828930 - L2 LINE L2 0 3313 2898 245 272 37 12 chr3 215208231 215208312 -2828846 + L2 LINE L2 3150 3232 -81 196 268 73 65 chr3 215208587 215208710 -2828448 + L2 LINE L2 3184 3307 -6 647 227 107 78 chr3 215208864 215209247 -2827911 - MSTD LTR MaLR -2 394 1 3781 179 67 0 chr3 215210070 215210789 -2826369 - L1MB7 LINE L1 -19 6165 5399 2125 81 3 34 chr3 215211090 215211411 -2825747 - AluSx SINE Alu -1 311 1 21 36 0 0 chr3 215212332 215212360 -2824798 + GC_rich Low_complexity Low_complexity 1 28 0 181 180 60 40 chr3 215213484 215213534 -2823624 + L2 LINE L2 3219 3269 -3 411 308 31 36 chr3 215216702 215216897 -2820261 - MIR3 SINE MIR -12 196 3 221 329 52 32 chr3 215217615 215217770 -2819388 + MIR SINE MIR 53 210 -52 2313 72 20 0 chr3 215218763 215219068 -2818090 + AluSq SINE Alu 1 311 -2 261 0 0 0 chr3 215219805 215219834 -2817324 + (TC)n Simple_repeat Simple_repeat 2 30 0 * 324 0 0 0 chr3 215219833 215219869 -2817289 + (TG)n Simple_repeat Simple_repeat 1 36 0 266 330 118 13 chr3 215220468 215220774 -2816384 - L1ME LINE L1 -288 5878 5541 393 207 17 103 chr3 215221672 215221788 -2815370 - L2 LINE L2 -25 3288 3183 251 271 162 54 chr3 215221878 215221981 -2815177 - L2 LINE L2 -134 3179 3089 2080 117 0 3 chr3 215221981 215222281 -2814877 - AluSq SINE Alu -14 299 1 251 271 162 54 chr3 215222281 215222491 -2814667 - L2 LINE L2 -224 3089 2832 235 260 160 0 chr3 215222540 215222690 -2814468 - L2 LINE L2 -616 2698 2525 1644 112 43 176 chr3 215223561 215223632 -2813526 - THE1B LTR MaLR 0 364 285 2256 102 0 7 chr3 215223632 215223926 -2813232 - AluSx SINE Alu -20 292 1 1644 112 43 176 chr3 215223926 215224274 -2812884 - THE1B LTR MaLR -79 285 1 1567 175 76 17 chr3 215224518 215224872 -2812286 + THE1C LTR MaLR 1 375 0 2040 182 22 22 chr3 215226524 215226937 -2810221 - MSTB LTR MaLR 0 426 14 214 254 36 64 chr3 215226937 215227047 -2810111 - L3 LINE CR1 -334 1243 1137 402 74 0 0 chr3 215227051 215227105 -2810053 + MER30 DNA MER1_type 1 54 -176 1261 96 30 6 chr3 215227105 215227272 -2809886 + AluSx SINE Alu 1 171 -141 1384 66 0 0 chr3 215227389 215227556 -2809602 + AluY SINE Alu 131 297 -14 840 65 84 0 chr3 215227558 215227665 -2809493 - AluSg SINE Alu -194 116 1 2010 191 101 14 chr3 215228575 215229000 -2808158 + MER66B LTR ERV1 25 486 0 274 242 132 0 chr3 215229219 215229310 -2807848 + MIR SINE MIR 49 151 -111 494 244 15 15 chr3 215229316 215229447 -2807711 - MIR SINE MIR 0 262 132 24 85 0 0 chr3 215229510 215229569 -2807589 + AT_rich Low_complexity Low_complexity 1 59 0 2027 238 36 17 chr3 215229572 215230474 -2806684 + L1M4b LINE L1 1206 2264 -4695 309 120 0 0 chr3 215230502 215230558 -2806600 + Alu SINE Alu 1 41 -262 666 102 34 26 chr3 215230662 215230936 -2806222 + (CA)n Simple_repeat Simple_repeat 1 276 0 689 115 55 0 chr3 215230995 215231383 -2805775 + (CA)n Simple_repeat Simple_repeat 1 409 0 508 177 37 8 chr3 215231397 215231640 -2805518 + (CA)n Simple_repeat Simple_repeat 1 250 0 270 306 199 29 chr3 215231842 215232048 -2805110 + MIR SINE MIR 22 262 0 1794 157 68 0 chr3 215232150 215232475 -2804683 + MER7A DNA MER2_type 2 346 0 923 89 7 0 chr3 215233316 215233451 -2803707 + (TCC)n Simple_repeat Simple_repeat 1 136 0 222 118 0 0 chr3 215233552 215233586 -2803572 + (TCCCC)n Simple_repeat Simple_repeat 2 35 0 207 221 42 0 chr3 215233576 215233671 -2803487 + CT-rich Low_complexity Low_complexity 3 101 0 * 285 98 0 0 chr3 215233668 215233709 -2803449 + (TCCCC)n Simple_repeat Simple_repeat 1 41 0 615 240 0 0 chr3 215233711 215233840 -2803318 - FLAM_A SINE Alu -4 129 1 424 295 33 0 chr3 215234585 215234707 -2802451 - L2 LINE L2 -9 3263 3138 1480 57 0 0 chr3 215235668 215235843 -2801315 - AluY SINE Alu -9 302 128 204 40 0 0 chr3 215236204 215236229 -2800929 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 287 235 106 35 chr3 215236240 215236325 -2800833 - L2 LINE L2 -14 3258 3168 1945 130 4 7 chr3 215237315 215237585 -2799573 + AluJb SINE Alu 6 274 -38 254 280 40 40 chr3 215237750 215237850 -2799308 - MIR3 SINE MIR -4 204 105 279 297 244 18 chr3 215238417 215238700 -2798458 + L2 LINE L2 2926 3272 0 1810 164 105 23 chr3 215239047 215239474 -2797684 - L1MB8 LINE L1 0 6178 5717 1815 64 0 0 chr3 215239574 215239792 -2797366 - AluSp SINE Alu -95 218 1 225 288 159 18 chr3 215241916 215242079 -2795079 + MER5A DNA MER1_type 1 186 -3 304 302 126 22 chr3 215242226 215242408 -2794750 + Charlie8 DNA MER1_type 73 273 -2144 432 0 0 0 chr3 215242737 215242785 -2794373 + (CA)n Simple_repeat Simple_repeat 2 49 0 3460 211 12 50 chr3 215243956 215244811 -2792347 + L1MA9 LINE L1 5445 6266 -46 238 133 0 50 chr3 215244883 215244943 -2792215 + (TTCCC)n Simple_repeat Simple_repeat 2 58 0 2433 169 29 18 chr3 215245061 215245553 -2791605 - Tigger3(Golem) DNA MER2_type -125 2904 2408 718 146 0 0 chr3 215245577 215245687 -2791471 - FLAM_C SINE Alu -32 111 2 659 118 76 14 chr3 215245694 215245838 -2791320 - Tigger3(Golem) DNA MER2_type -600 2429 2277 562 193 0 9 chr3 215245829 215245938 -2791220 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 180 246 70 0 chr3 215246704 215246761 -2790397 + MIR SINE MIR 91 151 -111 596 313 55 9 chr3 215247069 215247125 -2790033 - MIR SINE MIR 0 262 210 1545 131 14 0 chr3 215247125 215247346 -2789812 - AluJb SINE Alu -4 308 85 596 313 55 9 chr3 215247346 215247506 -2789652 - MIR SINE MIR -52 210 36 196 271 0 0 chr3 215247745 215247793 -2789365 - MIR SINE MIR -161 101 54 1498 201 36 33 chr3 215249497 215249895 -2787263 + L1M4 LINE L1 5352 5750 -428 356 203 0 0 chr3 215249889 215249963 -2787195 + L1M4 LINE L1 5646 5719 -459 * 7541 18 0 0 chr3 215250064 215251608 -2785550 + L1PA2 LINE L1 4628 6179 0 258 32 0 0 chr3 215251915 215251946 -2785212 + (TCC)n Simple_repeat Simple_repeat 1 31 0 304 269 0 0 chr3 215252915 215252982 -2784176 - MER5A DNA MER1_type -111 78 12 200 274 0 0 chr3 215253005 215253056 -2784102 + MIR SINE MIR 23 73 -135 396 300 15 8 chr3 215254293 215254423 -2782735 + (CA)n Simple_repeat Simple_repeat 2 132 0 196 263 92 0 chr3 215255172 215255248 -2781910 - MIR SINE MIR -23 239 157 749 274 51 0 chr3 215255345 215255542 -2781616 - MIR SINE MIR -28 234 28 521 98 70 0 chr3 215255684 215255827 -2781331 + (TG)n Simple_repeat Simple_repeat 1 153 0 2293 165 40 5 chr3 215255839 215256288 -2780870 - MLT1C LTR MaLR -2 465 1 525 184 0 0 chr3 215257290 215257404 -2779754 + (CA)n Simple_repeat Simple_repeat 1 114 0 381 188 0 0 chr3 215257445 215257525 -2779633 + (CA)n Simple_repeat Simple_repeat 1 80 0 246 242 0 0 chr3 215257705 215257771 -2779387 + (CA)n Simple_repeat Simple_repeat 1 66 0 366 325 84 20 chr3 215257813 215258016 -2779142 + MIR SINE MIR 13 228 -34 785 266 39 9 chr3 215258227 215258456 -2778702 - MIR SINE MIR -7 255 20 244 332 74 23 chr3 215258708 215258925 -2778233 - L2 LINE L2 -187 3085 2858 579 221 23 23 chr3 215261708 215261839 -2775319 - L2 LINE L2 -2 3270 3140 223 210 0 48 chr3 215262113 215262175 -2774983 + MIR3 SINE MIR 100 159 -49 509 225 78 7 chr3 215262243 215262385 -2774773 - MER103 DNA DNA -6 160 9 551 275 37 11 chr3 215263255 215263444 -2773714 - MIR3 SINE MIR -6 202 9 202 143 24 60 chr3 215263847 215263931 -2773227 + (CTA)n Simple_repeat Simple_repeat 3 83 0 1781 176 58 6 chr3 215264046 215264393 -2772765 + MLT1A1 LTR MaLR 1 365 0 430 278 26 20 chr3 215264447 215264598 -2772560 - MIR3 SINE MIR -22 186 35 669 266 28 41 chr3 215265784 215266002 -2771156 - MIR SINE MIR 0 262 48 226 345 66 0 chr3 215266976 215267032 -2770126 - MIR SINE MIR -49 213 162 2406 92 0 25 chr3 215267032 215267348 -2769810 - AluSg SINE Alu 0 310 3 226 345 66 0 chr3 215267348 215267433 -2769725 - MIR SINE MIR -100 162 63 631 309 102 4 chr3 215268195 215268451 -2768707 + L3 LINE CR1 1180 1460 -117 556 298 59 65 chr3 215268859 215269202 -2767956 - L1MB8 LINE L1 -349 5829 5603 261 0 0 0 chr3 215269202 215269231 -2767927 + (TG)n Simple_repeat Simple_repeat 2 30 0 556 298 59 65 chr3 215269231 215269481 -2767677 - L1MB8 LINE L1 -575 5603 5353 304 206 191 2 chr3 215269898 215270027 -2767131 + MER5A DNA MER1_type 6 189 0 228 274 16 0 chr3 215270790 215270852 -2766306 - LTR33A LTR ERVL -2 521 459 2067 75 4 4 chr3 215270971 215271223 -2765935 - AluSp SINE Alu -61 252 1 183 42 0 0 chr3 215271232 215271256 -2765902 + (T)n Simple_repeat Simple_repeat 1 24 0 2344 85 3 3 chr3 215271322 215271627 -2765531 - AluSx SINE Alu -7 305 1 289 289 31 21 chr3 215271634 215271768 -2765390 + MER5A DNA MER1_type 44 175 -3 2602 188 56 38 chr3 215272642 215272734 -2764424 + LTR9B LTR ERV1 7 96 -548 3243 55 0 0 chr3 215272734 215273152 -2764006 - L1PA5 LINE L1 0 6154 5737 2602 188 56 38 chr3 215273152 215273686 -2763472 + LTR9B LTR ERV1 96 644 0 530 265 25 69 chr3 215274003 215274207 -2762951 - L2 LINE L2 -1 3312 3118 246 143 48 0 chr3 215274245 215274308 -2762850 + (TG)n Simple_repeat Simple_repeat 1 66 0 301 290 97 11 chr3 215274308 215274484 -2762674 - L2 LINE L2 -216 3097 2907 932 101 0 0 chr3 215275169 215275288 -2761870 - AluSg/x SINE Alu -18 294 176 285 265 18 9 chr3 215277457 215277574 -2759584 - MIR SINE MIR -27 181 63 20531 137 32 41 chr3 215278467 215280890 -2756268 + L1MA3 LINE L1 16 2460 -5264 633 168 0 24 chr3 215280890 215281015 -2756143 + AluSg/x SINE Alu 190 311 -1 20531 137 32 41 chr3 215281015 215281488 -2755670 + L1MA3 LINE L1 2460 2936 -4788 2491 91 0 3 chr3 215281488 215281797 -2755361 + AluSx SINE Alu 1 308 -4 20531 137 32 41 chr3 215281797 215281890 -2755268 + L1MA3 LINE L1 2936 3028 -4696 2302 78 0 3 chr3 215281890 215282195 -2754963 + AluY SINE Alu 1 304 0 20531 137 32 41 chr3 215282195 215286855 -2750303 + L1MA3 LINE L1 3028 7724 0 2413 88 3 0 chr3 215286995 215287289 -2749869 + AluSq SINE Alu 1 295 -18 2327 86 10 3 chr3 215287319 215287620 -2749538 + AluY SINE Alu 1 303 -8 384 245 74 63 chr3 215288341 215288519 -2748639 + MIR SINE MIR 17 186 -41 218 136 23 0 chr3 215289700 215289744 -2747414 + MIR3 SINE MIR 120 164 -44 2599 79 22 5 chr3 215290081 215290450 -2746708 - THE1C LTR MaLR 0 375 1 245 227 142 13 chr3 215290976 215291063 -2746095 - MIR SINE MIR -69 139 43 366 267 8 42 chr3 215291174 215291294 -2745864 + MIR SINE MIR 33 148 -60 2373 81 3 10 chr3 215291933 215292231 -2744927 - AluSp SINE Alu -16 297 2 2247 94 7 30 chr3 215292867 215293165 -2743993 - AluSx SINE Alu -21 291 1 1839 171 11 53 chr3 215294874 215295254 -2741904 - L1MC3 LINE L1 -292 7493 7130 2300 85 0 29 chr3 215295663 215295969 -2741189 + AluSq SINE Alu 1 297 -16 222 192 0 0 chr3 215296576 215296628 -2740530 + CT-rich Low_complexity Low_complexity 4 55 0 41367 32 23 2 chr3 215296797 215302799 -2734359 - L1PA2 LINE L1 -19 6136 4 334 213 107 66 chr3 215306410 215306432 -2730726 + MIR SINE MIR 82 102 -160 1843 169 0 3 chr3 215306432 215306728 -2730430 - AluSq SINE Alu -18 295 1 334 213 107 66 chr3 215306728 215306827 -2730331 + MIR SINE MIR 102 208 -54 2201 172 101 0 chr3 215307042 215307507 -2729651 - LTR64 LTR ERVK 0 513 2 1832 127 76 4 chr3 215307625 215307901 -2729257 - AluSx SINE Alu -16 296 1 250 302 115 7 chr3 215308500 215308639 -2728519 - MIR3 SINE MIR -6 202 49 249 263 113 68 chr3 215308805 215308938 -2728220 - MIR SINE MIR -123 139 1 306 158 18 18 chr3 215309253 215309310 -2727848 + MER5A DNA MER1_type 14 70 -119 627 226 54 6 chr3 215310840 215311008 -2726150 + MIR SINE MIR 86 261 -1 1889 203 35 9 chr3 215313471 215313924 -2723234 + MLT1C LTR MaLR 1 465 -2 309 272 105 9 chr3 215315040 215315154 -2722004 + MIR3 SINE MIR 81 205 -3 2514 74 0 0 chr3 215315204 215315502 -2721656 - AluSq SINE Alu -15 298 1 735 237 78 39 chr3 215319909 215320141 -2717017 + MIR SINE MIR 18 258 -4 254 221 47 23 chr3 215320151 215320237 -2716921 + MIR3 SINE MIR 2 89 -119 21 0 0 0 chr3 215321114 215321135 -2716023 + AT_rich Low_complexity Low_complexity 1 21 0 435 322 57 34 chr3 215321202 215321587 -2715571 + MARNA DNA Mariner 26 419 -167 1764 164 13 10 chr3 215321591 215321895 -2715263 + AluJo SINE Alu 1 305 -7 187 302 0 0 chr3 215322585 215322628 -2714530 - L2 LINE L2 -16 3256 3214 500 253 109 28 chr3 215322695 215322796 -2714362 + L1ME4a LINE L1 5652 5743 -378 1834 147 29 16 chr3 215322796 215323102 -2714056 + AluJo SINE Alu 1 310 -2 500 253 109 28 chr3 215323102 215323285 -2713873 + L1ME4a LINE L1 5743 5959 -162 237 236 229 0 chr3 215325325 215325465 -2711693 + L1ME4a LINE L1 5950 6121 0 277 291 36 45 chr3 215326505 215326615 -2710543 + MIR3 SINE MIR 59 167 -41 940 279 96 23 chr3 215329018 215329412 -2707746 - LTR16A LTR ERVL -15 435 13 232 159 45 0 chr3 215330084 215330128 -2707030 - Alu SINE Alu -42 259 214 366 281 35 0 chr3 215330496 215330610 -2706548 + MIR3 SINE MIR 51 168 -40 2347 100 0 10 chr3 215332141 215332440 -2704718 + AluSg SINE Alu 1 296 -14 235 254 0 0 chr3 215332524 215332591 -2704567 + L3 LINE CR1 1401 1467 -110 180 0 0 0 chr3 215333297 215333317 -2703841 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 1756 172 3 30 chr3 215333336 215333633 -2703525 + AluJo SINE Alu 2 290 -22 359 281 118 7 chr3 215334106 215334241 -2702917 - MIR SINE MIR -25 183 34 611 265 13 7 chr3 215334250 215334401 -2702757 - L2 LINE L2 -6 3307 3156 2308 100 3 0 chr3 215334422 215334711 -2702447 + AluSx SINE Alu 1 290 -22 900 264 94 86 chr3 215334738 215335480 -2701678 - L2 LINE L2 -339 2975 2228 728 254 157 60 chr3 215335890 215336525 -2700633 + HAL1 LINE L1 421 993 -1514 2429 87 0 0 chr3 215336525 215336825 -2700333 + AluY SINE Alu 1 300 -11 728 254 157 60 chr3 215336825 215337706 -2699452 + HAL1 LINE L1 993 2290 -217 2264 108 3 0 chr3 215337706 215338002 -2699156 + AluSx SINE Alu 1 297 -15 728 254 157 60 chr3 215338002 215338238 -2698920 + HAL1 LINE L1 2290 2502 -5 564 262 124 25 chr3 215338252 215338527 -2698631 - L2 LINE L2 -1094 2220 1919 7504 158 52 12 chr3 215338557 215340832 -2696326 + L1PA14 LINE L1 3872 6152 -9 1726 171 93 10 chr3 215341017 215341114 -2696044 - MER63B DNA MER1_type -632 430 342 2362 101 0 0 chr3 215341114 215341410 -2695748 + AluSg SINE Alu 1 296 -14 1726 171 93 10 chr3 215341410 215341709 -2695449 - MER63B DNA MER1_type -720 342 1 471 257 18 0 chr3 215342490 215342599 -2694559 + MIR SINE MIR 34 144 -64 517 242 43 25 chr3 215342655 215342816 -2694342 - MER103 DNA DNA 0 166 3 2202 123 7 0 chr3 215342972 215343274 -2693884 + AluSc SINE Alu 1 304 -5 316 357 85 1 chr3 215343430 215343630 -2693528 - MIR SINE MIR -17 245 31 245 241 0 0 chr3 215343827 215343885 -2693273 + MIR SINE MIR 176 233 -29 343 279 69 12 chr3 215345442 215345590 -2691568 + MIR3 SINE MIR 14 164 -63 874 273 31 83 chr3 215345592 215346013 -2691145 + MLT1J LTR MaLR 1 399 -112 265 226 0 0 chr3 215346100 215346153 -2691005 + MIR SINE MIR 155 207 -55 288 252 137 53 chr3 215347491 215347622 -2689536 + MIR SINE MIR 2 143 -119 993 154 6 51 chr3 215347624 215347799 -2689359 - FRAM SINE Alu -12 164 1 2247 78 60 3 chr3 215347821 215348105 -2689053 + AluSx SINE Alu 1 300 -12 345 280 51 25 chr3 215348477 215348634 -2688524 + MIR SINE MIR 73 233 -29 508 276 50 11 chr3 215350317 215350498 -2686660 + MIR3 SINE MIR 14 201 -7 459 306 0 8 chr3 215351814 215351938 -2685220 - MIR SINE MIR -57 151 29 2474 92 0 0 chr3 215352473 215352777 -2684381 - AluSg SINE Alu -6 304 1 421 209 12 0 chr3 215352802 215352888 -2684270 + MER94 DNA DNA 2 88 -46 408 271 69 7 chr3 215353829 215353973 -2683185 + L1ME3 LINE L1 5693 5845 -317 1856 163 91 0 chr3 215354834 215355184 -2681974 - MER50 LTR ERV1 -28 706 325 195 42 0 0 chr3 215355247 215355271 -2681887 + (TCCC)n Simple_repeat Simple_repeat 4 27 0 1623 149 18 43 chr3 215355335 215355664 -2681494 - MER50 LTR ERV1 -413 321 1 184 214 0 0 chr3 215355675 215355717 -2681441 + MIR SINE MIR 33 74 -134 222 62 0 0 chr3 215357902 215357934 -2679224 + (TCCC)n Simple_repeat Simple_repeat 4 35 0 580 128 90 23 chr3 215358020 215358153 -2679005 + MER53 DNA DNA 1 142 -47 21 110 0 0 chr3 215358169 215358260 -2678898 + AT_rich Low_complexity Low_complexity 1 91 0 1967 134 48 0 chr3 215358260 215358552 -2678606 - AluSx SINE Alu -6 306 1 240 35 0 0 chr3 215358914 215358943 -2678215 + (GGGAGA)n Simple_repeat Simple_repeat 3 31 0 447 171 0 0 chr3 215358944 215359049 -2678109 + (TG)n Simple_repeat Simple_repeat 1 105 0 506 270 26 20 chr3 215359491 215359643 -2677515 + MIR SINE MIR 65 217 -45 362 208 52 0 chr3 215359681 215359758 -2677400 + MIR SINE MIR 58 138 -70 333 230 29 101 chr3 215359799 215359938 -2677220 + LTR67 LTR ERVL 20 148 -409 531 234 16 97 chr3 215360721 215360969 -2676189 - L1MC5 LINE L1 -27 7934 7707 2377 95 0 0 chr3 215362232 215362526 -2674632 - AluSq SINE Alu -19 294 1 1832 169 78 0 chr3 215362810 215363106 -2674052 + 7SLRNA srpRNA srpRNA 1 319 -1 2308 93 0 3 chr3 215365226 215365516 -2671642 + AluSg SINE Alu 1 289 -21 2220 110 13 0 chr3 215365708 215366008 -2671150 + AluSx SINE Alu 1 304 -8 618 101 0 0 chr3 215366008 215366117 -2671041 + (TA)n Simple_repeat Simple_repeat 2 110 0 624 245 71 46 chr3 215366383 215366579 -2670579 - Charlie8 DNA MER1_type -2216 201 1 264 276 102 20 chr3 215367616 215367714 -2669444 + MER94 DNA DNA 5 110 -24 1479 164 54 75 chr3 215368707 215369027 -2668131 - MLT1A1 LTR MaLR 0 365 53 1805 117 106 108 chr3 215369027 215369453 -2667705 + MSTA LTR MaLR 1 425 -3 1479 164 54 75 chr3 215369453 215369505 -2667653 - MLT1A1 LTR MaLR -312 53 1 194 243 0 0 chr3 215370747 215370784 -2666374 - L2 LINE L2 -20 3252 3216 223 326 118 11 chr3 215370788 215370975 -2666183 + L2 LINE L2 2770 2976 -338 2310 123 3 0 chr3 215371017 215371326 -2665832 - AluSg SINE Alu 0 310 1 417 253 0 10 chr3 215371802 215371901 -2665257 + MIR SINE MIR 49 146 -116 23 0 0 0 chr3 215373063 215373086 -2664072 + AT_rich Low_complexity Low_complexity 1 23 0 203 178 0 22 chr3 215373761 215373806 -2663352 + (CCTG)n Simple_repeat Simple_repeat 3 46 0 * 226 204 41 0 chr3 215373783 215373832 -2663326 + (TCCA)n Simple_repeat Simple_repeat 1 51 0 223 280 53 13 chr3 215374245 215374320 -2662838 + MIR3 SINE MIR 90 167 -41 412 320 101 46 chr3 215374352 215374658 -2662500 - L3 LINE CR1 0 1577 1255 429 70 0 0 chr3 215374729 215374786 -2662372 + (CA)n Simple_repeat Simple_repeat 1 57 0 471 115 0 0 chr3 215375145 215375223 -2661935 + Alu SINE Alu 233 310 0 2757 223 88 22 chr3 215375223 215376498 -2660660 + Charlie2a DNA MER1_type 890 2301 -561 247 105 0 0 chr3 215376500 215376538 -2660620 - MER51A LTR ERV1 -596 38 1 645 102 0 10 chr3 215376678 215376776 -2660382 + (GGA)n Simple_repeat Simple_repeat 3 99 0 2302 88 3 3 chr3 215377017 215377330 -2659828 + AluSq SINE Alu 1 313 0 373 320 127 58 chr3 215377497 215377947 -2659211 + L1 LINE L1 2915 3395 -2751 3350 149 38 15 chr3 215378680 215379285 -2657873 - MER50 LTR ERV1 -115 619 1 21 0 0 0 chr3 215380379 215380400 -2656758 + AT_rich Low_complexity Low_complexity 1 21 0 314 123 18 0 chr3 215380440 215380497 -2656661 + L1ME3A LINE L1 6113 6170 0 366 246 51 0 chr3 215380652 215380770 -2656388 - L1MC4 LINE L1 -124 7918 7795 405 198 0 0 chr3 215380875 215380966 -2656192 + (CA)n Simple_repeat Simple_repeat 2 92 0 2883 133 23 0 chr3 215380966 215381336 -2655822 - L1MA8 LINE L1 -301 5990 5605 2534 54 0 42 chr3 215381336 215381649 -2655509 - AluY SINE Alu -11 300 1 2883 133 23 0 chr3 215381649 215381758 -2655400 - L1MA8 LINE L1 -686 5605 5500 1575 77 4 73 chr3 215381759 215381992 -2655166 - AluSq SINE Alu -3 310 94 322 219 86 29 chr3 215382258 215382363 -2654795 + MER5B DNA MER1_type 6 116 -62 2217 93 0 30 chr3 215382948 215383248 -2653910 + AluSx SINE Alu 1 291 -21 195 42 0 0 chr3 215383248 215383272 -2653886 + (TA)n Simple_repeat Simple_repeat 2 25 0 248 200 78 0 chr3 215383412 215383502 -2653656 - L1MC/D LINE L1 -2299 5509 5413 238 333 0 0 chr3 215383514 215383598 -2653560 - MIR3 SINE MIR -5 203 120 185 0 40 0 chr3 215383634 215383659 -2653499 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 216 0 0 0 chr3 215383658 215383682 -2653476 + (GA)n Simple_repeat Simple_repeat 2 25 0 256 277 84 0 chr3 215383910 215383993 -2653165 - L1MC/D LINE L1 -1934 5874 5785 838 207 169 16 chr3 215384107 215384394 -2652764 - MLT1F LTR MaLR -116 426 121 * 2045 202 167 18 chr3 215384393 215385016 -2652142 + MER50 LTR ERV1 10 725 -9 447 264 33 8 chr3 215385031 215385152 -2652006 - MLT1F LTR MaLR -418 124 1 1970 91 4 0 chr3 215385255 215385530 -2651628 - AluSx SINE Alu 0 315 40 335 314 80 0 chr3 215385589 215385726 -2651432 - MIR3 SINE MIR -56 152 5 474 309 84 5 chr3 215385961 215386152 -2651006 + MIR SINE MIR 23 228 -34 345 47 0 0 chr3 215386531 215386574 -2650584 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 2310 86 7 0 chr3 215386585 215386877 -2650281 + AluSp SINE Alu 1 294 -19 191 360 13 0 chr3 215388817 215388892 -2648266 + MIR3 SINE MIR 90 165 -43 231 282 70 0 chr3 215389944 215390015 -2647143 + L1ME3A LINE L1 6068 6143 -27 191 303 0 0 chr3 215392759 215392848 -2644310 - MIR SINE MIR -61 147 59 297 321 202 0 chr3 215394257 215394450 -2642708 + MIR SINE MIR 15 246 -16 638 214 177 16 chr3 215394520 215394763 -2642395 - LTR16A LTR ERVL -4 446 165 707 159 19 57 chr3 215394899 215394930 -2642228 - MER5A DNA MER1_type -32 157 126 2253 111 10 0 chr3 215394930 215395236 -2641922 + AluSx SINE Alu 1 309 -3 707 159 19 57 chr3 215395236 215395361 -2641797 - MER5A DNA MER1_type -63 126 7 318 268 63 63 chr3 215395353 215395495 -2641663 - MIR3 SINE MIR -37 171 30 * 436 288 60 27 chr3 215396163 215396347 -2640811 - MIR3 SINE MIR -2 206 17 339 333 150 0 chr3 215397324 215397591 -2639567 - L1MC4 LINE L1 -573 7469 7163 369 190 25 123 chr3 215397678 215397841 -2639317 - MER5B DNA MER1_type -3 175 29 255 230 42 110 chr3 215397872 215398063 -2639095 - L2 LINE L2 -547 2767 2590 2322 85 3 0 chr3 215398608 215398917 -2638241 + AluSx SINE Alu 1 310 0 251 133 17 50 chr3 215399914 215399974 -2637184 + MIR SINE MIR 82 139 -69 314 208 160 0 chr3 215400163 215400269 -2636889 + MIR SINE MIR 26 148 -60 1799 143 37 11 chr3 215401261 215401534 -2635624 - AluJo SINE Alu -32 280 1 5679 86 24 11 chr3 215401780 215403004 -2634154 + L1PB2 LINE L1 4921 6149 -2 231 315 62 56 chr3 215403081 215403259 -2633899 - MLT1J LTR MaLR -42 469 291 2007 103 4 0 chr3 215403359 215403611 -2633547 - AluSx SINE Alu -59 253 1 901 245 91 44 chr3 215403612 215404136 -2633022 - MER21B LTR ERV1 -144 719 100 472 231 10 32 chr3 215404110 215404272 -2632886 - MER21B LTR ERV1 -407 198 2 * 297 308 45 8 chr3 215404273 215404406 -2632752 - LTR33 LTR ERVL -383 138 1 184 281 78 0 chr3 215404705 215404769 -2632389 + L2 LINE L2 2600 2668 -646 456 304 8 115 chr3 215405121 215405486 -2631672 - L2 LINE L2 -16 3256 2931 208 213 16 49 chr3 215405575 215405636 -2631522 + L2 LINE L2 3214 3272 0 604 259 129 0 chr3 215407670 215407840 -2629318 - MIR SINE MIR -24 238 47 2324 108 3 0 chr3 215408561 215408868 -2628290 - AluSp SINE Alu -5 308 1 427 265 0 34 chr3 215409187 215409304 -2627854 - L3 LINE CR1 -72 1505 1393 185 265 0 0 chr3 215409451 215409500 -2627658 - MIR3 SINE MIR -27 181 133 595 294 48 28 chr3 215409558 215409806 -2627352 - MIR SINE MIR -2 260 8 3919 137 7 62 chr3 215410650 215411381 -2625777 + LTR8 LTR ERV1 1 691 0 1871 182 9 17 chr3 215411646 215411992 -2625166 - MER7A DNA MER2_type -5 341 1 555 298 65 23 chr3 215412073 215412335 -2624823 - L1MC/D LINE L1 -2221 5587 5315 545 231 27 41 chr3 215412630 215412777 -2624381 - L1MCc LINE L1 -5490 933 789 367 351 82 4 chr3 215412974 215413219 -2623939 - L1MCc LINE L1 -5877 546 283 282 263 88 0 chr3 215413287 215413367 -2623791 + MLT1J LTR MaLR 99 185 -326 448 219 23 55 chr3 215413485 215413613 -2623545 + MLT1J2 LTR MaLR 321 444 -6 305 338 199 9 chr3 215414332 215414548 -2622610 - L3 LINE CR1 -66 1511 1255 1340 172 134 30 chr3 215416166 215416434 -2620724 + AluJb SINE Alu 1 296 -16 554 14 0 0 chr3 215417069 215417140 -2620018 + L1PA4 LINE L1 6083 6153 -2 234 290 52 73 chr3 215417621 215417771 -2619387 + MIR3 SINE MIR 8 152 -69 339 205 60 0 chr3 215417913 215417995 -2619163 - MLT1D LTR MaLR -2 503 417 1833 187 91 39 chr3 215417995 215418455 -2618703 - LTR2B LTR ERV1 0 490 7 623 244 80 41 chr3 215418461 215418817 -2618341 - MLT1D LTR MaLR -90 377 1 371 282 55 31 chr3 215418893 215419056 -2618102 - MIR SINE MIR -50 212 46 265 299 28 9 chr3 215419491 215419598 -2617560 + L3 LINE CR1 1439 1547 -30 508 295 106 1 chr3 215419742 215420135 -2617023 - LTR16B LTR ERVL 0 464 1 865 204 64 43 chr3 215420137 215420388 -2616770 + L1ME3 LINE L1 5911 6162 -2 205 219 0 0 chr3 215421187 215421228 -2615930 - L2 LINE L2 -2 3270 3230 199 325 48 58 chr3 215422970 215423158 -2614000 - L3 LINE CR1 -19 1558 1373 220 333 93 25 chr3 215423323 215423499 -2613659 - L3 LINE CR1 -200 1377 1191 1363 134 20 0 chr3 215424244 215424445 -2612713 + AluJb SINE Alu 105 309 -3 684 271 111 18 chr3 215424840 215425272 -2611886 - L1MEd LINE L1 -2741 3388 2929 747 310 101 70 chr3 215425285 215425522 -2611636 - L1MEd LINE L1 -5273 846 618 644 197 8 8 chr3 215425522 215425644 -2611514 - FLAM_A SINE Alu -11 122 1 747 310 101 70 chr3 215425644 215426186 -2610972 - L1MEd LINE L1 -5501 618 43 2318 96 0 0 chr3 215426693 215426984 -2610174 - AluSg1 SINE Alu -18 291 1 529 239 63 50 chr3 215428163 215428322 -2608836 - L3 LINE CR1 -1 1576 1416 226 226 113 75 chr3 215428877 215428983 -2608175 - MLT1I LTR MaLR -4 405 296 243 0 0 0 chr3 215429038 215429065 -2608093 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2096 132 0 10 chr3 215429067 215429356 -2607802 - AluSp SINE Alu -27 286 1 922 18 0 0 chr3 215430197 215430310 -2606848 - L1PA5 LINE L1 -140 6014 5902 324 373 20 33 chr3 215430917 215431070 -2606088 - L2 LINE L2 -1 3271 3121 284 207 24 12 chr3 215431147 215431229 -2605929 - L1M4 LINE L1 -1301 4845 4763 1842 148 33 30 chr3 215431242 215431547 -2605611 - AluJo SINE Alu -6 306 1 272 83 0 0 chr3 215431550 215431586 -2605572 - Alu SINE Alu -264 38 3 231 184 0 0 chr3 215431591 215431629 -2605529 - Alu SINE Alu -264 38 1 557 219 7 22 chr3 215432419 215432556 -2604602 - MLT1J1 LTR MaLR -278 168 34 243 234 12 19 chr3 215433612 215433676 -2603482 + MER91B DNA MER1_type 14 80 -60 687 280 42 9 chr3 215434146 215434381 -2602777 - MIR SINE MIR -11 251 13 336 339 47 8 chr3 215434715 215434842 -2602316 - L2 LINE L2 0 3313 3182 307 269 56 0 chr3 215434905 215435013 -2602145 - MER5A DNA MER1_type -72 117 4 241 228 25 63 chr3 215435281 215435360 -2601798 + MIR3 SINE MIR 133 208 0 410 320 87 7 chr3 215435418 215435568 -2601590 - MIR3 SINE MIR -31 177 16 343 319 65 38 chr3 215438106 215438291 -2598867 - MIR3 SINE MIR -1 207 18 382 272 77 101 chr3 215439125 215439412 -2597746 + L2 LINE L2 2993 3272 0 575 300 82 7 chr3 215439871 215440151 -2597007 + L1M4 LINE L1 5354 5654 -516 722 187 37 0 chr3 215440191 215440325 -2596833 - MER5A DNA MER1_type -50 139 1 259 306 45 0 chr3 215440331 215440465 -2596693 + L1M4 LINE L1 5670 5809 -375 2242 90 0 30 chr3 215440587 215440888 -2596270 - AluSc SINE Alu -17 292 1 311 171 214 8 chr3 215441183 215441300 -2595858 - L1ME4a LINE L1 -12 6109 5969 299 301 111 15 chr3 215441309 215441508 -2595650 - L1ME4a LINE L1 -194 5927 5710 747 231 52 4 chr3 215442015 215442244 -2594914 - L1MB7 LINE L1 0 6184 5945 492 289 57 20 chr3 215443933 215444148 -2593010 - MIR SINE MIR -39 223 2 252 267 41 34 chr3 215444647 215444793 -2592365 + Charlie2 DNA MER1_type 1 147 -2715 246 32 0 0 chr3 215445000 215445031 -2592127 + (ATG)n Simple_repeat Simple_repeat 2 32 0 2241 120 0 0 chr3 215445779 215446079 -2591079 - AluSc SINE Alu -9 300 1 847 246 119 33 chr3 215446276 215446711 -2590447 + MLT1H LTR MaLR 1 526 -23 478 299 113 34 chr3 215446769 215447123 -2590035 + MLT1J2 LTR MaLR 51 432 -18 489 275 57 52 chr3 215447156 215447374 -2589784 - MIR SINE MIR -39 223 5 268 196 69 98 chr3 215447367 215447469 -2589689 + MIR3 SINE MIR 110 208 0 * 232 261 14 14 chr3 215447899 215447968 -2589190 - MIR SINE MIR -72 136 68 251 254 146 108 chr3 215448297 215448427 -2588731 + MIR3 SINE MIR 42 176 -32 339 253 69 35 chr3 215448481 215448568 -2588590 - L1MC4 LINE L1 -1340 6702 6613 2344 102 0 0 chr3 215448576 215448870 -2588288 - AluSq SINE Alu -19 294 1 355 297 8 16 chr3 215449328 215449456 -2587702 - MLT1K LTR MaLR -3 585 459 2253 92 0 16 chr3 215449919 215450233 -2586925 + AluSc SINE Alu 1 309 0 332 146 140 55 chr3 215450711 215450875 -2586283 - LTR50 LTR ERVL -557 238 61 326 289 0 0 chr3 215451366 215451442 -2585716 + MIR SINE MIR 56 131 -131 506 298 165 0 chr3 215452876 215453064 -2584094 + MIR SINE MIR 20 238 -24 1017 212 120 64 chr3 215453103 215453561 -2583597 - MLT1D LTR MaLR -2 465 3 509 293 29 34 chr3 215453611 215453769 -2583389 - LTR16A1 LTR ERVL -1 456 298 1628 208 9 82 chr3 215453769 215454196 -2582962 + MSTD LTR MaLR 1 396 0 509 293 29 34 chr3 215454196 215454242 -2582916 - LTR16A1 LTR ERVL -159 298 253 26 50 0 0 chr3 215454405 215454445 -2582713 + AT_rich Low_complexity Low_complexity 1 40 0 755 269 44 22 chr3 215454657 215455088 -2582070 - L1ME LINE L1 -505 5642 5202 290 301 98 0 chr3 215455164 215455337 -2581821 - L1ME LINE L1 -1045 5084 4895 363 311 57 40 chr3 215455344 215455521 -2581637 - L1ME LINE L1 -1299 4830 4651 504 283 66 14 chr3 215455527 215455785 -2581373 + MLT1L LTR MaLR 316 614 -1 238 278 98 6 chr3 215455788 215455961 -2581197 - L1ME LINE L1 -3846 2283 2095 296 48 24 0 chr3 215456298 215456340 -2580818 + (ATG)n Simple_repeat Simple_repeat 2 44 0 2185 150 25 33 chr3 215456384 215456777 -2580381 + MLT1B LTR MaLR 1 390 0 2303 99 7 0 chr3 215457132 215457424 -2579734 - AluSg SINE Alu -16 294 1 352 349 20 7 chr3 215457491 215457640 -2579518 - HAL1 LINE L1 -928 1579 1429 504 278 115 26 chr3 215457643 215457966 -2579192 - L1MEd LINE L1 -4857 1257 930 2332 104 7 0 chr3 215458023 215458332 -2578826 - AluSx SINE Alu -1 311 1 389 333 74 74 chr3 215458449 215458896 -2578262 - L1MEd LINE L1 -5393 726 280 874 255 61 0 chr3 215458934 215459181 -2577977 + L1ME1 LINE L1 5897 6158 -8 270 0 0 0 chr3 215460126 215460156 -2577002 + (TG)n Simple_repeat Simple_repeat 1 30 0 252 0 0 0 chr3 215460155 215460183 -2576975 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 509 303 80 11 chr3 215460184 215460359 -2576799 - MIR3 SINE MIR -19 189 3 537 229 36 14 chr3 215460789 215460929 -2576229 - MER97a DNA MER1_type? -731 163 21 2317 107 0 13 chr3 215461497 215461806 -2575352 + AluSx SINE Alu 1 305 -7 1417 257 50 16 chr3 215463591 215464030 -2573128 - MLT1F LTR MaLR -87 455 2 280 278 40 134 chr3 215464434 215465032 -2572126 - LTR67 LTR ERVL -6 551 10 3855 187 31 18 chr3 215465230 215466079 -2571079 + L1MB7 LINE L1 5273 6132 -52 579 314 28 14 chr3 215466243 215466530 -2570628 - L1ME4a LINE L1 -267 5854 5564 374 122 54 0 chr3 215466794 215466868 -2570290 + HAL1 LINE L1 82 159 -2348 422 317 57 38 chr3 215466966 215467228 -2569930 - L1ME4a LINE L1 -1722 4424 4158 459 233 8 0 chr3 215467694 215467799 -2569359 + MER5A DNA MER1_type 4 109 -80 201 218 0 0 chr3 215467990 215468068 -2569090 + GA-rich Low_complexity Low_complexity 2 79 0 191 286 29 57 chr3 215468444 215468514 -2568644 + MIR SINE MIR 81 148 -114 340 255 20 39 chr3 215469298 215469400 -2567758 - MER5A DNA MER1_type -77 112 13 1078 281 73 93 chr3 215469759 215469912 -2567246 + HAL1 LINE L1 884 1039 -1468 2335 90 0 0 chr3 215469912 215470202 -2566956 + AluSc SINE Alu 1 290 -19 1078 281 73 93 chr3 215470202 215470833 -2566325 + HAL1 LINE L1 1039 1652 -855 1240 240 29 54 chr3 215470858 215471266 -2565892 - MLT1D LTR MaLR -2 503 106 627 183 78 28 chr3 215471260 215471402 -2565756 - MLT1D LTR MaLR -338 167 19 * 187 53 26 26 chr3 215471511 215471549 -2565609 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 2240 113 3 3 chr3 215471552 215471853 -2565305 + AluSx SINE Alu 1 301 -11 2780 199 11 35 chr3 215471915 215472483 -2564675 - MLT2B3 LTR ERVL 0 554 1 320 307 65 26 chr3 215472656 215472809 -2564349 + HAL1b LINE L1 750 908 -440 307 258 25 25 chr3 215472868 215472988 -2564170 + HAL1b LINE L1 787 906 -442 2249 132 0 0 chr3 215472998 215473308 -2563850 + AluSq SINE Alu 1 310 -3 21 0 0 0 chr3 215473325 215473346 -2563812 + AT_rich Low_complexity Low_complexity 1 21 0 272 308 126 21 chr3 215473618 215473936 -2563222 + L3 LINE CR1 1103 1460 -117 434 314 28 76 chr3 215473958 215474226 -2562932 + MIR SINE MIR 5 262 0 2196 101 3 10 chr3 215476045 215476342 -2560816 + AluSq SINE Alu 1 295 -18 298 259 35 12 chr3 215476350 215476435 -2560723 - MIR SINE MIR -125 137 51 260 317 100 17 chr3 215476721 215476841 -2560317 + MIR SINE MIR 15 144 -118 2202 120 7 0 chr3 215477110 215477418 -2559740 - AluSx SINE Alu -2 310 1 201 39 0 0 chr3 215477524 215477550 -2559608 + (CA)n Simple_repeat Simple_repeat 2 27 0 460 301 36 6 chr3 215477619 215477785 -2559373 + MIR SINE MIR 14 184 -78 2000 105 7 51 chr3 215478245 215478567 -2558591 - AluY SINE Alu 0 309 1 337 299 11 81 chr3 215479902 215480076 -2557082 + L3 LINE CR1 1415 1576 -1 824 150 0 8 chr3 215480528 215480655 -2556503 - FLAM_A SINE Alu -7 126 1 2300 88 0 7 chr3 215480826 215481121 -2556037 - AluSg SINE Alu -17 293 1 2474 74 0 0 chr3 215481271 215481582 -2555576 - AluY SINE Alu 0 311 1 1312 88 0 0 chr3 215482025 215482195 -2554963 + MLT2A1 LTR ERVL 275 444 0 260 53 26 0 chr3 215482698 215482736 -2554422 + (GA)n Simple_repeat Simple_repeat 1 39 0 921 140 17 6 chr3 215483830 215484008 -2553150 + CT-rich Low_complexity Low_complexity 1 180 0 221 125 0 0 chr3 215484008 215484040 -2553118 + (TCCC)n Simple_repeat Simple_repeat 2 33 0 1974 105 67 0 chr3 215484044 215484329 -2552829 - AluSg SINE Alu -6 304 1 427 292 27 55 chr3 215484331 215484550 -2552608 - MIR SINE MIR -48 214 2 208 189 0 0 chr3 215485044 215485081 -2552077 + T-rich Low_complexity Low_complexity 5 180 0 2334 103 6 0 chr3 215485081 215485393 -2551765 - AluSq SINE Alu 0 351 1 312 287 91 23 chr3 215485626 215485891 -2551267 - MLT1J2 LTR MaLR -17 433 151 2002 173 40 8 chr3 215485916 215486287 -2550871 + MLT1B LTR MaLR 8 390 0 803 107 102 79 chr3 215486530 215486583 -2550575 - MLT1B LTR MaLR -70 320 270 2408 103 0 0 chr3 215486583 215486894 -2550264 - AluSq SINE Alu -2 311 1 803 107 102 79 chr3 215486894 215487017 -2550141 - MLT1B LTR MaLR -120 270 140 484 195 38 130 chr3 215487770 215487955 -2549203 - MLT1J2 LTR MaLR 0 450 283 386 308 129 12 chr3 215488022 215488262 -2548896 - MLT1J2 LTR MaLR -162 288 21 1366 278 31 10 chr3 215488308 215488696 -2548462 + LTR16A LTR ERVL 5 400 -50 913 144 0 0 chr3 215488696 215488821 -2548337 + FLAM_C SINE Alu 1 125 -18 27 29 0 0 chr3 215488821 215488855 -2548303 + AT_rich Low_complexity Low_complexity 1 34 0 272 219 0 31 chr3 215488858 215488922 -2548236 + LTR16A LTR ERVL 389 450 0 229 288 55 0 chr3 215488982 215489055 -2548103 + L2 LINE L2 3217 3293 -20 857 136 30 15 chr3 215489066 215489198 -2547960 + FLAM_C SINE Alu 1 134 -9 808 102 42 0 chr3 215491252 215491370 -2545788 + AluJb SINE Alu 1 123 -189 1071 148 0 0 chr3 215491469 215491631 -2545527 + AluSg/x SINE Alu 141 302 -10 2339 86 3 19 chr3 215491928 215492243 -2544915 + AluSx SINE Alu 1 310 -2 495 303 0 0 chr3 215492338 215492635 -2544523 + GA-rich Low_complexity Low_complexity 1 297 0 2304 59 0 49 chr3 215492766 215492898 -2544260 - MER41A LTR ERV1 -246 308 171 2358 100 0 0 chr3 215492898 215493199 -2543959 - AluSg SINE Alu -9 301 1 2304 59 0 49 chr3 215493199 215493390 -2543768 - MER41A LTR ERV1 -383 171 1 3322 235 40 39 chr3 215493390 215495722 -2541436 + L1MCa LINE L1 1224 3886 -2540 468 171 11 0 chr3 215495718 215495806 -2541352 + L1MC3 LINE L1 7628 7716 -69 * 1881 184 0 3 chr3 215495806 215496110 -2541048 - AluJb SINE Alu -9 303 1 25 0 0 0 chr3 215496113 215496138 -2541020 + AT_rich Low_complexity Low_complexity 1 25 0 8582 247 54 38 chr3 215496142 215497243 -2539915 + L1MEc LINE L1 1587 2669 -3546 2294 75 3 7 chr3 215497243 215497537 -2539621 - AluSc SINE Alu -16 293 1 8582 247 54 38 chr3 215497537 215498186 -2538972 + L1MEc LINE L1 2669 3306 -2909 198 0 0 0 chr3 215498186 215498208 -2538950 + (TA)n Simple_repeat Simple_repeat 2 23 0 8582 247 54 38 chr3 215498208 215498345 -2538813 + L1MEc LINE L1 3306 3439 -2776 1796 157 15 55 chr3 215498345 215498670 -2538488 - AluJo SINE Alu 0 312 1 8582 247 54 38 chr3 215498670 215500467 -2536691 + L1MEc LINE L1 3439 5291 -924 5377 48 3 3 chr3 215500757 215501409 -2535749 - L1PA7 LINE L1 0 6154 5503 225 269 0 0 chr3 215501678 215501730 -2535428 + MLT1L LTR MaLR 174 225 -390 2198 99 0 13 chr3 215502161 215502463 -2534695 - AluSc SINE Alu -9 300 3 210 247 165 12 chr3 215503921 215504006 -2533152 + MIR SINE MIR 47 144 -118 333 68 0 0 chr3 215504470 215504514 -2532644 + (CA)n Simple_repeat Simple_repeat 1 44 0 281 273 0 0 chr3 215504747 215504813 -2532345 - MIR SINE MIR -111 97 32 2365 95 0 3 chr3 215504952 215505247 -2531911 - AluSg SINE Alu -16 294 1 3613 197 15 73 chr3 215505931 215506805 -2530353 + MER99 DNA DNA 4 826 -2 404 236 209 0 chr3 215506837 215506985 -2530173 + MIR SINE MIR 15 193 -69 184 247 94 24 chr3 215506999 215507084 -2530074 + MIR SINE MIR 169 259 -3 4490 179 74 26 chr3 215507117 215507464 -2529694 - Charlie5 DNA MER1_type -1 2623 2294 3861 97 9 0 chr3 215507464 215508001 -2529157 + L1PA13 LINE L1 5622 6163 0 4490 179 74 26 chr3 215508001 215508709 -2528449 - Charlie5 DNA MER1_type -330 2294 1517 252 285 52 139 chr3 215509890 215510157 -2527001 + L2 LINE L2 3004 3247 -25 1416 172 27 98 chr3 215510201 215510588 -2526570 + MLT1A1 LTR MaLR 1 368 -7 1582 160 65 23 chr3 215510589 215510867 -2526291 + L1MC1 LINE L1 5997 6291 -42 2470 134 33 28 chr3 215510867 215511293 -2525865 + MSTA LTR MaLR 1 428 0 1582 160 65 23 chr3 215511293 215511321 -2525837 + L1MC1 LINE L1 6291 6316 -17 834 200 30 55 chr3 215511322 215511522 -2525636 + AluJo SINE Alu 112 306 -6 280 281 46 11 chr3 215511536 215511665 -2525493 - MIR SINE MIR -68 140 18 2619 195 117 8 chr3 215512261 215512883 -2524275 - Charlie5 DNA MER1_type -754 1858 1169 2268 123 27 35 chr3 215512883 215513250 -2523908 - THE1B LTR MaLR 0 364 1 * 2313 177 50 13 chr3 215513250 215513778 -2523380 - Charlie5 DNA MER1_type -1437 1175 628 476 346 71 36 chr3 215513778 215514087 -2523071 - MLT1K LTR MaLR -158 430 111 254 278 5 134 chr3 215514095 215514304 -2522854 - L2 LINE L2 -181 3091 2910 18425 155 25 11 chr3 215514709 215521094 -2516064 + L1PB1 LINE L1 35 6508 -359 338 211 0 22 chr3 215521094 215521184 -2515974 + (CATA)n Simple_repeat Simple_repeat 2 89 0 2459 123 3 3 chr3 215521192 215521549 -2515609 + L1PB1 LINE L1 6510 6866 -1 1856 236 75 57 chr3 215521569 215522306 -2514852 - HAL1 LINE L1 -13 2494 1670 2880 13 0 0 chr3 215522306 215522613 -2514545 + AluYa5 SINE Alu 1 307 -4 1856 236 75 57 chr3 215522613 215522830 -2514328 - HAL1 LINE L1 -837 1670 1458 2182 178 59 10 chr3 215522997 215523035 -2514123 - MLT2B3 LTR ERVL 0 554 519 452 18 18 0 chr3 215523035 215523092 -2514066 + (TAGA)n Simple_repeat Simple_repeat 2 59 0 2182 178 59 10 chr3 215523092 215523457 -2513701 - MLT2B3 LTR ERVL -35 519 131 3253 230 94 48 chr3 215523460 215524059 -2513099 - HAL1 LINE L1 -1072 1435 865 1716 176 0 28 chr3 215524059 215524349 -2512809 + AluJb SINE Alu 1 282 -30 3253 230 94 48 chr3 215524349 215525011 -2512147 - HAL1 LINE L1 -1642 865 98 1798 163 26 13 chr3 215525012 215525319 -2511839 - AluJb SINE Alu -1 311 1 2080 135 0 3 chr3 215525484 215525780 -2511378 + AluSg SINE Alu 1 295 -15 825 264 98 42 chr3 215525998 215526072 -2511086 + MLT1L LTR MaLR 181 249 -366 2334 97 0 0 chr3 215526072 215526370 -2510788 - AluSg1 SINE Alu -11 298 1 825 264 98 42 chr3 215526370 215526701 -2510457 + MLT1L LTR MaLR 249 609 -6 611 271 13 71 chr3 215527238 215527463 -2509695 + MIR SINE MIR 51 262 0 1794 148 0 50 chr3 215528188 215528374 -2508784 - AluJb SINE Alu 0 350 156 2576 116 11 3 chr3 215528374 215528735 -2508423 + THE1B LTR MaLR 1 364 0 10220 112 36 27 chr3 215528735 215530302 -2506856 + THE1B-int LTR MaLR 1 1580 0 1978 187 22 8 chr3 215530303 215530661 -2506497 + THE1B LTR MaLR 2 364 0 1794 148 0 50 chr3 215530661 215530836 -2506322 - AluJb SINE Alu -192 158 1 1095 194 5 22 chr3 215531315 215531537 -2505621 - AluJo SINE Alu 0 312 95 263 326 0 0 chr3 215532128 215532217 -2504941 + MIR3 SINE MIR 113 201 -7 408 237 36 36 chr3 215533054 215533193 -2503965 + LTR67 LTR ERVL 418 556 -1 364 356 9 0 chr3 215533940 215534055 -2503103 - L2 LINE L2 -1 3312 3197 711 132 195 13 chr3 215534335 215534494 -2502664 + MER53 DNA DNA 1 188 -1 21 36 0 0 chr3 215536825 215536853 -2500305 + AT_rich Low_complexity Low_complexity 1 28 0 339 85 0 0 chr3 215537047 215537094 -2500064 + (TG)n Simple_repeat Simple_repeat 1 47 0 443 296 41 24 chr3 215537125 215537294 -2499864 + MIR SINE MIR 15 186 -76 246 260 32 106 chr3 215537466 215537617 -2499541 - MIR3 SINE MIR -96 112 5 1821 148 28 21 chr3 215537761 215538051 -2499107 - AluJo SINE Alu -20 292 1 235 264 14 107 chr3 215538784 215538924 -2498234 - L2 LINE L2 -179 3093 2967 267 262 0 0 chr3 215539401 215539462 -2497696 + (CA)n Simple_repeat Simple_repeat 2 62 0 440 322 66 30 chr3 215541247 215541598 -2495560 + L3 LINE CR1 958 1364 -213 2194 118 3 16 chr3 215542744 215543059 -2494099 - AluSx SINE Alu -1 311 1 1881 165 3 3 chr3 215543069 215543366 -2493792 - AluJb SINE Alu -15 297 1 484 283 81 6 chr3 215543591 215543764 -2493394 + MIR SINE MIR 67 252 -10 180 125 0 0 chr3 215544463 215544495 -2492663 + (TCCC)n Simple_repeat Simple_repeat 2 33 0 205 299 19 25 chr3 215545521 215545629 -2491529 + MIR SINE MIR 107 212 -50 260 313 45 0 chr3 215546223 215546335 -2490823 - MIR3 SINE MIR -21 187 71 1335 249 48 2 chr3 215546390 215546787 -2490371 + MLT1C LTR MaLR 53 467 0 189 296 34 45 chr3 215546852 215546940 -2490218 - MIR SINE MIR -33 229 143 25 0 0 0 chr3 215547000 215547025 -2490133 + AT_rich Low_complexity Low_complexity 1 25 0 261 333 96 0 chr3 215547296 215547431 -2489727 + L2 LINE L2 1959 2106 -1208 414 134 0 0 chr3 215547431 215547498 -2489660 + (TCCCC)n Simple_repeat Simple_repeat 4 70 0 190 243 184 73 chr3 215547685 215547821 -2489337 + L2 LINE L2 2553 2703 -611 472 305 194 20 chr3 215547893 215548296 -2488862 + L2 LINE L2 2839 3311 -2 489 236 64 0 chr3 215548300 215548410 -2488748 - MIR SINE MIR -115 147 31 420 244 77 80 chr3 215549234 215549569 -2487589 + MLT1H LTR MaLR 69 549 0 956 255 84 15 chr3 215549570 215549903 -2487255 - L1ME3A LINE L1 -52 6118 5763 1103 276 54 16 chr3 215549983 215550826 -2486332 - L1ME3A LINE L1 -403 5767 4886 528 295 76 21 chr3 215550869 215551106 -2486052 + MIR SINE MIR 13 262 0 2406 104 0 0 chr3 215552177 215552484 -2484674 + AluSg SINE Alu 2 308 -2 211 143 24 0 chr3 215553759 215553801 -2483357 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 739 56 28 0 chr3 215554445 215554553 -2482605 + (TTTC)n Simple_repeat Simple_repeat 3 113 0 283 291 99 33 chr3 215554774 215554925 -2482233 - L2 LINE L2 0 3313 3153 273 29 0 0 chr3 215555155 215555189 -2481969 + (TG)n Simple_repeat Simple_repeat 2 35 0 312 282 60 17 chr3 215555546 215555663 -2481495 - MIR SINE MIR -27 235 114 205 288 55 14 chr3 215555775 215555848 -2481310 + L2 LINE L2 3150 3225 -47 229 241 0 35 chr3 215555867 215555925 -2481233 - L2 LINE L2 0 3272 3217 1891 153 3 10 chr3 215556322 215556645 -2480513 - AluJb SINE Alu 0 312 1 385 224 60 60 chr3 215556717 215556833 -2480325 + MIR3 SINE MIR 9 124 -84 310 243 10 87 chr3 215556843 215556946 -2480212 + MER5B DNA MER1_type 83 177 -1 2346 157 56 0 chr3 215557114 215557523 -2479635 + MSTB1 LTR MaLR 1 432 0 375 141 28 14 chr3 215557689 215557760 -2479398 + MER63 DNA MER1_type 669 740 -321 355 217 12 24 chr3 215557854 215557937 -2479221 + MIR SINE MIR 179 260 -2 405 286 68 15 chr3 215558261 215558394 -2478764 - MIR SINE MIR -70 192 53 2507 78 0 3 chr3 215558406 215558712 -2478446 + AluSc SINE Alu 1 305 -4 202 328 168 0 chr3 215559948 215560073 -2477085 - L3 LINE CR1 -359 1218 1073 338 287 0 9 chr3 215560077 215560185 -2476973 - MIR SINE MIR -7 255 149 480 295 52 35 chr3 215560443 215560616 -2476542 + MIR SINE MIR 20 195 -67 2095 102 7 0 chr3 215560696 215560970 -2476188 - AluSx SINE Alu -13 299 24 190 406 102 0 chr3 215560975 215561172 -2475986 - L3 LINE CR1 -1296 281 65 181 277 170 27 chr3 215561686 215561798 -2475360 - L2 LINE L2 -470 2844 2717 300 244 128 94 chr3 215561903 215562083 -2475075 + MIR3 SINE MIR 19 204 -4 371 331 165 4 chr3 215562371 215562613 -2474545 + L1M4 LINE L1 4865 5145 -1001 1920 172 0 0 chr3 215562617 215562913 -2474245 - AluSx SINE Alu -16 296 1 300 293 0 41 chr3 215564236 215564359 -2472799 - LTR67 LTR ERVL -4 553 436 459 152 0 0 chr3 215564502 215564581 -2472577 + (CCA)n Simple_repeat Simple_repeat 3 81 0 201 143 0 29 chr3 215564800 215564835 -2472323 + (GGA)n Simple_repeat Simple_repeat 3 36 0 734 189 40 7 chr3 215565072 215565220 -2471938 - MER20 DNA MER1_type -66 153 1 2486 92 0 6 chr3 215565547 215565861 -2471297 + AluSx SINE Alu 1 312 0 993 154 0 37 chr3 215565861 215566049 -2471109 + AluSg/x SINE Alu 127 308 0 249 180 0 0 chr3 215566775 215566825 -2470333 + CT-rich Low_complexity Low_complexity 3 52 0 1910 90 219 3 chr3 215567261 215567571 -2469587 + MER51B LTR ERV1 1 377 0 180 213 38 125 chr3 215567571 215567651 -2469507 - MIR SINE MIR -71 191 119 235 289 174 41 chr3 215567846 215567967 -2469191 - L2 LINE L2 -3 3269 3133 2195 109 13 3 chr3 215568157 215568461 -2468697 - AluSg SINE Alu -3 307 1 186 340 109 19 chr3 215568550 215568706 -2468452 - L2 LINE L2 -161 3111 2942 402 346 31 0 chr3 215568768 215568927 -2468231 - MIR SINE MIR -50 212 49 323 321 103 6 chr3 215569898 215570063 -2467095 - MIR SINE MIR -73 189 9 204 40 0 0 chr3 215570097 215570122 -2467036 + (CACCAT)n Simple_repeat Simple_repeat 6 30 0 227 299 15 30 chr3 215570152 215570286 -2466872 + (CAT)n Simple_repeat Simple_repeat 3 134 0 216 97 0 0 chr3 215570314 215570345 -2466813 + (CACCAT)n Simple_repeat Simple_repeat 6 36 0 233 299 5 53 chr3 215570375 215570562 -2466596 + (CAT)n Simple_repeat Simple_repeat 3 180 0 195 129 0 0 chr3 215570647 215570678 -2466480 + (CACCAT)n Simple_repeat Simple_repeat 6 36 0 229 299 15 29 chr3 215570708 215570845 -2466313 + (CAT)n Simple_repeat Simple_repeat 3 137 0 216 97 0 0 chr3 215570922 215570953 -2466205 + (CACCAT)n Simple_repeat Simple_repeat 6 36 0 236 284 8 45 chr3 215570983 215571117 -2466041 + (CACCAT)n Simple_repeat Simple_repeat 6 134 0 195 129 0 0 chr3 215571145 215571176 -2465982 + (CACCAT)n Simple_repeat Simple_repeat 6 36 0 237 65 0 0 chr3 215571316 215571347 -2465811 + (CACCAT)n Simple_repeat Simple_repeat 6 36 0 207 139 0 0 chr3 215571377 215571413 -2465745 + (CACCAT)n Simple_repeat Simple_repeat 6 41 0 522 197 19 164 chr3 215572083 215572145 -2465013 - MER5B DNA MER1_type 0 178 109 2368 112 0 0 chr3 215572145 215572449 -2464709 - AluSx SINE Alu -8 304 1 522 197 19 164 chr3 215572449 215572594 -2464564 - MER5B DNA MER1_type -69 109 1 707 315 57 87 chr3 215572961 215573466 -2463692 + L2 LINE L2 2521 3005 -267 2311 112 0 0 chr3 215573466 215573769 -2463389 - AluSc SINE Alu -6 303 1 707 315 57 87 chr3 215573769 215573924 -2463234 + L2 LINE L2 3005 3163 -109 286 331 36 36 chr3 215574699 215574838 -2462320 - L2 LINE L2 -50 3222 3084 221 139 23 0 chr3 215574855 215574898 -2462260 + (CTCA)n Simple_repeat Simple_repeat 2 45 0 207 246 62 0 chr3 215574898 215574963 -2462195 + L2 LINE L2 3204 3272 0 3151 108 21 142 chr3 215575608 215576332 -2460826 - LTR12 LTR ERV1 -133 581 1 500 229 61 23 chr3 215576478 215576609 -2460549 + MIR3 SINE MIR 8 143 -65 2565 62 7 0 chr3 215576845 215577152 -2460006 - AluY SINE Alu -2 309 1 246 32 0 0 chr3 215577745 215577776 -2459382 + (CA)n Simple_repeat Simple_repeat 2 32 0 204 206 0 0 chr3 215578227 215578261 -2458897 + (CACCAT)n Simple_repeat Simple_repeat 1 34 0 464 248 34 97 chr3 215578309 215578515 -2458643 - MIR SINE MIR -56 206 14 292 245 157 10 chr3 215579443 215579545 -2457613 - MIR3 SINE MIR -3 205 89 405 317 116 49 chr3 215580232 215580639 -2456519 + L2 LINE L2 2839 3272 0 1107 106 0 0 chr3 215580740 215580900 -2456258 + MER41A LTR ERV1 395 554 0 464 230 14 7 chr3 215580910 215581049 -2456109 - L1MCc LINE L1 -5216 1725 1586 1902 174 3 0 chr3 215581052 215581345 -2455813 - AluJb SINE Alu -16 296 3 2070 107 47 23 chr3 215581397 215581697 -2455461 - AluSc SINE Alu 0 309 3 543 181 101 7 chr3 215581783 215581921 -2455237 + L1M4 LINE L1 4981 5131 -1015 214 103 0 52 chr3 215581923 215581981 -2455177 + (CAAAA)n Simple_repeat Simple_repeat 3 57 0 376 184 0 0 chr3 215582032 215582112 -2455046 - AluJ/FRAM SINE Alu -12 290 223 1436 112 73 0 chr3 215582558 215582763 -2454395 - AluSc SINE Alu -89 220 1 1369 183 81 9 chr3 215582764 215583098 -2454060 - L1MCc LINE L1 -4856 1566 1209 1654 145 53 10 chr3 215583098 215583577 -2453581 + LTR29 LTR ERV1 1 613 -9 335 204 11 45 chr3 215583606 215583694 -2453464 - L1MCc LINE L1 -5293 1129 1045 1164 230 27 26 chr3 215583793 215584292 -2452866 + LTR29 LTR ERV1 137 644 0 1342 251 62 99 chr3 215584292 215584348 -2452810 - L1MCc LINE L1 -5373 1049 992 2441 96 0 0 chr3 215584348 215584651 -2452507 - AluSg SINE Alu -7 303 1 1342 251 62 99 chr3 215584651 215585316 -2451842 - L1MCc LINE L1 -5430 992 1 733 194 21 7 chr3 215585575 215585719 -2451439 - AluJb SINE Alu -30 282 137 2066 139 42 21 chr3 215585800 215586130 -2451028 - MER1B DNA MER1_type 0 337 1 1694 149 6 58 chr3 215586137 215586465 -2450693 - AluSx SINE Alu -1 311 1 207 242 0 0 chr3 215586918 215587017 -2450141 + CT-rich Low_complexity Low_complexity 1 99 0 354 281 0 0 chr3 215587190 215587488 -2449670 + CT-rich Low_complexity Low_complexity 1 298 0 901 172 0 53 chr3 215587584 215587811 -2449347 - AluSc SINE Alu -3 306 92 1780 215 112 16 chr3 215588005 215588815 -2448343 + SATR1 Satellite Satellite 1 887 -89 1074 266 236 17 chr3 215589221 215590000 -2447158 + L2 LINE L2 2369 3313 0 395 309 84 36 chr3 215590713 215590838 -2446320 - L1M4 LINE L1 -2740 3406 3288 198 0 0 0 chr3 215590838 215590860 -2446298 + (TA)n Simple_repeat Simple_repeat 2 23 0 395 309 84 36 chr3 215590860 215591148 -2446010 - L1M4 LINE L1 -2858 3288 2973 279 239 0 26 chr3 215591170 215591325 -2445833 + C-rich Low_complexity Low_complexity 6 156 0 221 314 17 23 chr3 215591459 215591631 -2445527 + (CCCCG)n Simple_repeat Simple_repeat 3 173 0 * 249 369 6 3 chr3 215591573 215591809 -2445349 + C-rich Low_complexity Low_complexity 1 236 0 459 245 138 25 chr3 215642812 215642971 -2394187 - MIR SINE MIR 0 262 86 196 240 125 21 chr3 215642990 215643086 -2394072 - MIR3 SINE MIR -44 164 59 774 103 14 7 chr3 215643866 215644012 -2393146 + (TG)n Simple_repeat Simple_repeat 1 147 0 710 41 10 0 chr3 215644116 215644214 -2392944 + (TG)n Simple_repeat Simple_repeat 1 99 0 240 314 133 44 chr3 215644215 215644508 -2392650 - L2 LINE L2 -470 2844 2526 702 242 102 0 chr3 215644546 215644732 -2392426 - MER63A DNA MER1_type 0 210 6 194 264 99 44 chr3 215645162 215645253 -2391905 - MIR3 SINE MIR -38 170 75 2409 103 3 0 chr3 215645359 215645670 -2391488 - AluSx SINE Alu 0 312 1 298 137 78 0 chr3 215645680 215645731 -2391427 - AluJb SINE Alu -195 107 53 2017 190 44 87 chr3 215645786 215646306 -2390852 - MLT1F LTR MaLR -44 498 1 197 222 311 0 chr3 215646361 215646451 -2390707 + MIR SINE MIR 63 180 -82 739 293 56 22 chr3 215646626 215646858 -2390300 + MIR SINE MIR 7 246 -16 2276 107 0 52 chr3 215647587 215647914 -2389244 - AluSx SINE Alu 0 312 3 450 282 19 6 chr3 215648044 215648200 -2388958 + MER103 DNA DNA 2 159 -7 2155 101 4 0 chr3 215648529 215648805 -2388353 + AluSx SINE Alu 1 277 -35 341 268 51 43 chr3 215648937 215649075 -2388083 - MER91C DNA MER1_type -1 139 1 462 254 314 16 chr3 215649092 215649340 -2387818 - MER5C DNA MER1_type -1 323 2 1403 139 5 14 chr3 215649554 215649763 -2387395 - AluJb SINE Alu -105 207 1 434 276 68 21 chr3 215650044 215650236 -2386922 + L1ME LINE L1 5528 5728 -393 403 148 0 0 chr3 215650238 215650299 -2386859 + AluJb SINE Alu 82 142 -170 3826 252 115 26 chr3 215650655 215651504 -2385654 + L2 LINE L2 1428 2200 -1113 2296 114 0 3 chr3 215651504 215651812 -2385346 + AluSx SINE Alu 1 307 -5 3826 252 115 26 chr3 215651812 215652667 -2384491 + L2 LINE L2 2200 3277 -36 343 366 99 16 chr3 215652677 215652863 -2384295 - L2 LINE L2 -586 2728 2559 2396 84 20 0 chr3 215652863 215653161 -2383997 - AluSx SINE Alu -8 304 1 343 366 99 16 chr3 215653161 215653296 -2383862 - L2 LINE L2 -755 2559 2380 309 140 0 0 chr3 215653370 215653427 -2383731 + (CA)n Simple_repeat Simple_repeat 1 57 0 509 297 82 6 chr3 215654050 215654232 -2382926 + MER91A DNA MER1_type 1 196 0 356 330 45 6 chr3 215654657 215654836 -2382322 - MER117 DNA MER1_type -10 187 2 1321 101 17 0 chr3 215655097 215655276 -2381882 - AluSg SINE Alu -2 310 129 205 103 77 0 chr3 215655276 215655315 -2381843 + T-rich Low_complexity Low_complexity 4 45 0 891 84 0 0 chr3 215655315 215655422 -2381736 - AluSg SINE Alu -179 131 25 201 235 128 49 chr3 215655899 215656001 -2381157 - L2 LINE L2 -16 3297 3188 834 198 41 6 chr3 215656205 215656377 -2380781 + MER5B DNA MER1_type 1 178 0 1343 193 59 48 chr3 215656778 215657212 -2379946 - MLT1C LTR MaLR -9 458 12 1796 134 52 4 chr3 215657538 215657828 -2379330 + AluSx SINE Alu 1 303 0 306 0 0 0 chr3 215657872 215657906 -2379252 + (CA)n Simple_repeat Simple_repeat 1 34 0 444 246 186 0 chr3 215658515 215658698 -2378460 + MIR SINE MIR 31 247 -15 275 267 116 0 chr3 215658742 215658828 -2378330 + MER117 DNA MER1_type 53 148 -49 2240 190 48 14 chr3 215658934 215659376 -2377782 + LTR32 LTR ERVL 15 471 0 280 262 76 29 chr3 215659500 215659639 -2377519 + MIR SINE MIR 56 201 -61 220 283 0 0 chr3 215660115 215660168 -2376990 + MIR SINE MIR 81 133 -75 803 163 8 0 chr3 215660738 215660861 -2376297 - FLAM_C SINE Alu -18 125 2 186 241 37 0 chr3 215661121 215661175 -2375983 + MER5B DNA MER1_type 122 177 -1 186 278 0 37 chr3 215661132 215661186 -2375972 - MER5A DNA MER1_type -133 56 5 339 295 29 22 chr3 215661469 215661613 -2375545 - MIR SINE MIR -62 146 33 22 35 0 0 chr3 215662231 215662260 -2374898 + AT_rich Low_complexity Low_complexity 1 29 0 222 133 0 40 chr3 215662570 215662645 -2374513 + (TATAA)n Simple_repeat Simple_repeat 2 73 0 25 0 0 0 chr3 215662684 215662709 -2374449 + AT_rich Low_complexity Low_complexity 1 25 0 327 242 145 16 chr3 215662789 215662913 -2374245 - L1ME LINE L1 -417 5745 5606 2192 105 20 0 chr3 215663289 215663583 -2373575 + AluSq SINE Alu 1 300 -13 316 256 15 83 chr3 215663868 215664001 -2373157 + MIR SINE MIR 98 221 -41 552 216 0 0 chr3 215664041 215664143 -2373015 + Tigger3b DNA MER2_type 1 102 -1129 * 4557 136 47 72 chr3 215664141 215664472 -2372686 + Tigger3b DNA MER2_type 274 612 -2416 2116 113 3 29 chr3 215664472 215664781 -2372377 + AluSg SINE Alu 1 301 -9 4557 136 47 72 chr3 215664781 215665429 -2371729 + Tigger3b DNA MER2_type 612 1228 -3 2218 103 33 0 chr3 215665532 215665834 -2371324 - AluSq SINE Alu -1 312 1 308 252 99 0 chr3 215665929 215666040 -2371118 - L1ME LINE L1 -417 5704 5583 343 282 106 7 chr3 215666255 215666397 -2370761 + MIR3 SINE MIR 1 156 -52 2077 106 21 3 chr3 215667592 215667874 -2369284 + AluSx SINE Alu 9 295 -17 229 281 0 18 chr3 215667950 215668007 -2369151 - MER5B DNA MER1_type -3 175 120 195 289 36 24 chr3 215669001 215669084 -2368074 - MIR SINE MIR -67 141 58 2182 126 0 0 chr3 215669134 215669436 -2367722 + AluSg SINE Alu 2 303 -7 442 243 65 0 chr3 215669964 215670071 -2367087 + MLT1G3 LTR MaLR 209 322 -208 200 275 29 0 chr3 215670140 215670209 -2366949 - L2 LINE L2 -213 3059 2989 286 295 0 38 chr3 215670483 215670588 -2366570 + MIR SINE MIR 48 149 -59 1679 250 45 55 chr3 215670788 215671387 -2365771 - MLT1G1 LTR MaLR -2 593 1 326 282 3 71 chr3 215672233 215672426 -2364732 - MIR SINE MIR -62 146 16 775 276 39 99 chr3 215672475 215672990 -2364168 - L2 LINE L2 0 3313 2830 27 73 0 0 chr3 215673339 215673394 -2363764 + AT_rich Low_complexity Low_complexity 1 55 0 1745 174 18 0 chr3 215673714 215673995 -2363163 + AluJo SINE Alu 1 286 -26 336 280 40 10 chr3 215673995 215674095 -2363063 + L1MC4 LINE L1 6617 6719 -1323 236 242 101 40 chr3 215674104 215674203 -2362955 + L3 LINE CR1 1301 1405 -172 387 264 11 0 chr3 215674383 215674470 -2362688 - L2 LINE L2 -33 3239 3152 2350 103 0 3 chr3 215674837 215675147 -2362011 - AluSg SINE Alu -1 309 1 273 260 0 0 chr3 215675451 215675524 -2361634 + (CA)n Simple_repeat Simple_repeat 1 73 0 2183 103 0 20 chr3 215676444 215676745 -2360413 - AluSc SINE Alu -14 295 1 1565 180 10 39 chr3 215676747 215677052 -2360106 - AluJo SINE Alu -16 296 1 396 303 20 0 chr3 215677907 215678006 -2359152 - L2 LINE L2 -12 3260 3160 345 110 0 110 chr3 215678702 215678793 -2358365 + L1MC2 LINE L1 6264 6344 0 216 303 59 50 chr3 215678813 215678932 -2358226 + MIR SINE MIR 33 152 -56 241 261 0 0 chr3 215679093 215679139 -2358019 + L2 LINE L2 2313 2358 -956 379 277 8 8 chr3 215679142 215679414 -2357744 + GA-rich Low_complexity Low_complexity 1 272 0 391 330 0 17 chr3 215679566 215679745 -2357413 + GA-rich Low_complexity Low_complexity 3 178 0 356 284 0 22 chr3 215679794 215680073 -2357085 + GA-rich Low_complexity Low_complexity 1 272 0 245 283 0 19 chr3 215680091 215680197 -2356961 + GA-rich Low_complexity Low_complexity 3 106 0 204 240 53 41 chr3 215680132 215680303 -2356855 + (CAGAG)n Simple_repeat Simple_repeat 2 174 0 * 246 256 24 18 chr3 215680281 215680445 -2356713 + (CACAG)n Simple_repeat Simple_repeat 3 167 0 213 283 0 0 chr3 215680924 215680977 -2356181 - L2 LINE L2 -79 3193 3141 1077 223 63 28 chr3 215681065 215681527 -2355631 + L1M4c LINE L1 1984 2461 -3923 4739 155 30 19 chr3 215681580 215681882 -2355276 + Tigger1 DNA MER2_type 1465 1762 -656 2358 81 0 10 chr3 215681882 215682179 -2354979 - AluY SINE Alu -17 294 1 4739 155 30 19 chr3 215682179 215682235 -2354923 + Tigger1 DNA MER2_type 1762 1816 -602 2213 115 3 19 chr3 215682235 215682549 -2354609 - AluSc SINE Alu 0 309 1 4739 155 30 19 chr3 215682549 215683131 -2354027 + Tigger1 DNA MER2_type 1816 2416 -2 1631 224 11 0 chr3 215683134 215683509 -2353649 - L1 LINE L1 -3498 2648 2270 2235 107 0 0 chr3 215683509 215683800 -2353358 + AluSg SINE Alu 9 299 -11 415 324 17 28 chr3 215683829 215684005 -2353153 + L2 LINE L2 2834 3007 -265 276 301 117 0 chr3 215684006 215684109 -2353049 + MIR3 SINE MIR 87 201 -7 973 129 17 34 chr3 215685484 215685662 -2351496 + LTR9 LTR ERV1 438 612 0 1344 121 0 0 chr3 215685760 215685959 -2351199 + HUERS-P3 LTR ERV1 8720 8918 -1 2894 117 73 20 chr3 215685959 215686454 -2350704 + LTR9 LTR ERV1 1 521 -91 223 313 36 24 chr3 215686742 215686825 -2350333 - MIR SINE MIR -122 140 57 223 203 0 51 chr3 215687160 215687219 -2349939 + C-rich Low_complexity Low_complexity 3 58 0 547 290 55 6 chr3 215687623 215687806 -2349352 + MIR SINE MIR 21 212 -50 1430 154 32 36 chr3 215687841 215688088 -2349070 + AluSx SINE Alu 1 246 -66 538 134 0 24 chr3 215688088 215688170 -2348988 + AluJb SINE Alu 39 118 -194 360 0 0 0 chr3 215688171 215688211 -2348947 + (CA)n Simple_repeat Simple_repeat 2 41 0 892 204 0 47 chr3 215688214 215688386 -2348772 + FRAM SINE Alu 2 165 -1 237 315 0 0 chr3 215689604 215689677 -2347481 + MIR SINE MIR 32 104 -104 2353 109 6 3 chr3 215689930 215690241 -2346917 + AluSx SINE Alu 1 312 0 234 308 124 24 chr3 215690584 215690753 -2346405 - MIR SINE MIR -57 205 20 2325 98 0 3 chr3 215691101 215691398 -2345760 + AluSq SINE Alu 1 296 -17 330 335 98 0 chr3 215691863 215692027 -2345131 + L3 LINE CR1 1274 1453 -124 1902 149 0 23 chr3 215692345 215692646 -2344512 + AluJo SINE Alu 1 294 -18 877 211 10 42 chr3 215692698 215692910 -2344248 + MLT1J2 LTR MaLR 1 206 -244 692 214 107 0 chr3 215692978 215693137 -2344021 - MER58A DNA MER1_type -27 197 22 543 227 119 28 chr3 215693142 215693318 -2343840 + MLT1J2 LTR MaLR 256 447 -3 231 339 0 0 chr3 215693838 215693903 -2343255 + L2 LINE L2 3206 3270 -2 211 289 200 8 chr3 215695139 215695261 -2341897 - MIR SINE MIR -58 150 10 615 260 41 0 chr3 215696326 215696472 -2340686 + MIR3 SINE MIR 3 154 -54 390 260 135 0 chr3 215696866 215696962 -2340196 + MIR SINE MIR 19 127 -81 224 315 31 39 chr3 215697268 215697398 -2339760 - MIR3 SINE MIR -45 163 35 280 313 71 18 chr3 215697756 215697868 -2339290 - L2 LINE L2 -18 3254 3137 2036 149 3 3 chr3 215698278 215698580 -2338578 + AluSx SINE Alu 1 302 -10 2478 95 56 56 chr3 215699144 215699525 -2337633 + MSTB1 LTR MaLR 2 386 -46 2082 116 0 31 chr3 215699525 215699847 -2337311 + AluSq SINE Alu 2 314 0 2478 95 56 56 chr3 215699847 215699895 -2337263 + MSTB1 LTR MaLR 385 432 0 2470 81 3 0 chr3 215701746 215702044 -2335114 + AluSp SINE Alu 1 299 -14 297 0 0 0 chr3 215702057 215702090 -2335068 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr3 215703654 215703675 -2333483 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr3 215704355 215704396 -2332762 + GC_rich Low_complexity Low_complexity 1 41 0 24 67 0 0 chr3 215705381 215705426 -2331732 + GC_rich Low_complexity Low_complexity 1 45 0 234 360 137 13 chr3 215707920 215708073 -2329085 - L2 LINE L2 -190 3082 2911 2308 89 7 0 chr3 215708078 215708387 -2328771 + AluSx SINE Alu 1 311 0 590 218 140 72 chr3 215709714 215710007 -2327151 - L2 LINE L2 -6 3307 2995 914 209 44 48 chr3 215710018 215710250 -2326908 + MER33 DNA MER1_type 1 233 -2352 1633 126 0 0 chr3 215710250 215710472 -2326686 + AluSg/x SINE Alu 83 304 -6 914 209 44 48 chr3 215710472 215710512 -2326646 + MER33 DNA MER1_type 233 272 -52 536 171 81 0 chr3 215710510 215710621 -2326537 + MLT1D LTR MaLR 373 492 -13 * 264 321 63 68 chr3 215711016 215711253 -2325905 + L2 LINE L2 2810 3045 -227 981 121 81 0 chr3 215711326 215711475 -2325683 - AluSg/x SINE Alu -18 292 132 2087 110 24 7 chr3 215711475 215711765 -2325393 - AluSg SINE Alu -15 295 1 411 320 31 8 chr3 215711785 215711913 -2325245 + L2 LINE L2 3137 3267 -5 492 242 43 91 chr3 215711957 215712143 -2325015 - MIR3 SINE MIR -12 196 20 310 346 59 20 chr3 215712685 215712838 -2324320 - MIR SINE MIR -17 245 87 527 209 78 128 chr3 215713134 215713455 -2323703 - MLT1C LTR MaLR -8 382 78 676 171 8 8 chr3 215713468 215713585 -2323573 + AluJb SINE Alu 12 128 -184 871 168 0 32 chr3 215713626 215713781 -2323377 - AluJo SINE Alu -37 275 126 189 0 0 0 chr3 215713833 215713854 -2323304 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 920 317 54 15 chr3 215714787 215715194 -2321964 - L3 LINE CR1 -12 1565 1143 249 186 169 0 chr3 215715419 215715478 -2321680 + L2 LINE L2 3188 3256 -57 768 68 0 0 chr3 215715483 215715586 -2321572 + (TGAA)n Simple_repeat Simple_repeat 4 106 0 1272 111 67 0 chr3 215715972 215716180 -2320978 + L1MA6 LINE L1 6074 6295 -5 263 289 111 0 chr3 215717209 215717299 -2319859 - MIR SINE MIR -50 212 113 2333 96 0 3 chr3 215717455 215717757 -2319401 - AluSq SINE Alu -12 301 1 245 288 116 55 chr3 215718232 215718378 -2318780 + MIR3 SINE MIR 3 157 -51 524 219 169 0 chr3 215718382 215718536 -2318622 + MER5A DNA MER1_type 4 188 -1 630 124 0 50 chr3 215718578 215718699 -2318459 - L1MA8 LINE L1 -3 6288 6174 2232 106 13 0 chr3 215718726 215719027 -2318131 + AluSx SINE Alu 1 305 -7 204 337 65 0 chr3 215719067 215719159 -2317999 + MIR SINE MIR 26 123 -85 259 276 46 23 chr3 215720192 215720279 -2316879 - L2 LINE L2 -203 3069 2981 1565 191 0 53 chr3 215721099 215721402 -2315756 - AluJo SINE Alu -24 288 2 232 153 14 97 chr3 215721636 215721708 -2315450 - MER112 DNA MER1_type -183 77 12 430 308 56 0 chr3 215721728 215721871 -2315287 + MIR SINE MIR 37 187 -75 2253 104 3 3 chr3 215722250 215722549 -2314609 - AluSc SINE Alu -10 299 1 3299 143 39 28 chr3 215722843 215723492 -2313666 - L1MA9 LINE L1 -3 6309 5654 917 167 62 11 chr3 215723706 215724230 -2312928 + L1MB8 LINE L1 5433 6168 -10 207 0 0 0 chr3 215724230 215724253 -2312905 + (TA)n Simple_repeat Simple_repeat 2 24 0 2491 74 0 6 chr3 215724255 215724567 -2312591 - AluSg SINE Alu 0 310 1 2215 99 48 0 chr3 215724858 215725151 -2312007 + AluSx SINE Alu 1 307 -5 250 230 118 92 chr3 215725192 215725344 -2311814 + MER5A DNA MER1_type 7 162 -27 2244 94 7 20 chr3 215727246 215727575 -2309583 - AluSp SINE Alu 0 313 1 1870 127 72 0 chr3 215727956 215728232 -2308926 + AluSx SINE Alu 1 296 -16 728 269 82 91 chr3 215729131 215729430 -2307728 - HAL1 LINE L1 -1551 956 663 2459 71 3 0 chr3 215729430 215729726 -2307432 - AluSq SINE Alu -14 299 3 728 269 82 91 chr3 215729726 215729966 -2307192 - HAL1 LINE L1 -1844 663 422 737 212 155 10 chr3 215731798 215731991 -2305167 + MIR SINE MIR 6 226 -36 21 0 0 0 chr3 215732685 215732706 -2304452 + AT_rich Low_complexity Low_complexity 1 21 0 982 103 0 0 chr3 215732722 215732848 -2304310 - FLAM_C SINE Alu -17 126 1 21 0 0 0 chr3 215733480 215733501 -2303657 + AT_rich Low_complexity Low_complexity 1 21 0 2250 103 3 0 chr3 215733762 215734063 -2303095 + AluSp SINE Alu 1 302 -11 354 313 182 39 chr3 215734237 215734971 -2302187 - L3 LINE CR1 -53 1524 610 7543 36 6 0 chr3 215735050 215736518 -2300640 - L1PA4 LINE L1 -3 6152 4681 181 282 26 43 chr3 215736599 215736716 -2300442 - MIR SINE MIR -1 261 147 216 253 77 44 chr3 215736780 215736871 -2300287 - L3 LINE CR1 -1126 451 358 377 347 146 11 chr3 215736872 215737140 -2300018 - L3 LINE CR1 -1152 425 122 722 174 8 8 chr3 215738322 215738454 -2298704 - FLAM_C SINE Alu -10 133 2 243 213 0 13 chr3 215738460 215738535 -2298623 - L1ME4a LINE L1 -2 6119 6046 2259 111 3 0 chr3 215738679 215738976 -2298182 - AluSx SINE Alu -14 298 1 301 319 7 58 chr3 215740279 215740417 -2296741 + MIR SINE MIR 7 137 -125 208 308 0 0 chr3 215740524 215740576 -2296582 - L2 LINE L2 -8 3264 3213 193 276 26 53 chr3 215741435 215741511 -2295647 - MIR SINE MIR -103 105 32 211 306 116 48 chr3 215741580 215741727 -2295431 + MIR SINE MIR 68 224 -38 * 685 250 61 25 chr3 215741691 215741887 -2295271 - MIR SINE MIR -4 258 56 197 333 16 0 chr3 215741906 215741969 -2295189 + MIR SINE MIR 187 250 -12 450 204 0 83 chr3 215741973 215741991 -2295167 - LTR40c LTR ERVL 0 462 444 2185 131 3 3 chr3 215741991 215742303 -2294855 + AluSx SINE Alu 1 312 0 450 204 0 83 chr3 215742303 215742392 -2294766 - LTR40c LTR ERVL -18 444 364 2267 105 0 20 chr3 215742504 215742808 -2294350 - AluSx SINE Alu -14 298 1 207 0 0 0 chr3 215744111 215744134 -2293024 + (A)n Simple_repeat Simple_repeat 1 23 0 277 274 111 22 chr3 215744332 215744467 -2292691 - MIR3 SINE MIR -1 207 61 281 235 33 0 chr3 215744731 215744822 -2292336 - L1M3 LINE L1 -723 5431 5347 426 315 109 33 chr3 215744852 215745128 -2292030 - L1M3 LINE L1 -908 5238 4942 349 228 51 0 chr3 215745149 215745228 -2291930 - MIR SINE MIR -178 84 2 2330 119 0 0 chr3 215745391 215745702 -2291456 + AluSx SINE Alu 1 311 -1 223 289 132 8 chr3 215746382 215746503 -2290655 - MIR SINE MIR -1 261 126 444 250 78 0 chr3 215746517 215746589 -2290569 + MIR SINE MIR 123 188 -74 1011 31 0 0 chr3 215746589 215746716 -2290442 + (TG)n Simple_repeat Simple_repeat 2 128 0 444 250 78 0 chr3 215746716 215746771 -2290387 + MIR SINE MIR 188 260 -2 25 31 0 0 chr3 215748019 215748051 -2289107 + GC_rich Low_complexity Low_complexity 1 32 0 28 79 0 0 chr3 215748172 215748235 -2288923 + GC_rich Low_complexity Low_complexity 1 63 0 449 239 133 14 chr3 215748555 215748751 -2288407 + MIR SINE MIR 3 222 -40 249 203 72 0 chr3 215748772 215748841 -2288317 + MIR SINE MIR 59 132 -76 382 189 41 90 chr3 215749217 215749339 -2287819 - MIR SINE MIR -57 205 90 212 235 39 0 chr3 215749774 215749825 -2287333 + MIR3 SINE MIR 117 169 -39 2419 88 0 0 chr3 215751883 215752179 -2284979 - AluSx SINE Alu -16 296 1 477 302 17 23 chr3 215752736 215752908 -2284250 + L2 LINE L2 2864 3034 -279 308 111 56 0 chr3 215752912 215752966 -2284192 + AluS SINE Alu 1 57 -244 2224 117 3 7 chr3 215753057 215753365 -2283793 - AluSx SINE Alu -5 307 1 537 221 84 38 chr3 215753365 215753496 -2283662 + L2 LINE L2 3165 3301 -12 1898 104 101 0 chr3 215753864 215754132 -2283026 + AluSx SINE Alu 1 295 -17 515 275 129 17 chr3 215754156 215754179 -2282979 - MIR SINE MIR -3 259 240 1710 40 0 15 chr3 215754179 215754379 -2282779 + AluY SINE Alu 105 301 -10 515 275 129 17 chr3 215754379 215754588 -2282570 - MIR SINE MIR -22 240 1 498 271 43 7 chr3 215754628 215754768 -2282390 - MIR SINE MIR -38 224 80 189 344 110 7 chr3 215754784 215754938 -2282220 + MIR SINE MIR 13 182 -80 2329 77 0 3 chr3 215755281 215755567 -2281591 + AluSc SINE Alu 1 285 -24 311 64 0 0 chr3 215755567 215755614 -2281544 + AluSc SINE Alu 253 299 0 189 269 0 0 chr3 215755754 215755821 -2281337 - L2 LINE L2 -300 2972 2906 2098 111 31 10 chr3 215756044 215756332 -2280826 + AluSq SINE Alu 1 294 -19 1943 153 7 0 chr3 215756347 215756634 -2280524 + AluJo SINE Alu 6 294 -18 693 188 23 0 chr3 215756736 215756864 -2280294 + FLAM_C SINE Alu 2 132 -1 189 222 63 48 chr3 215757175 215757238 -2279920 - L2 LINE L2 -221 3051 2988 2277 90 7 3 chr3 215758212 215758513 -2278645 + AluSq SINE Alu 1 302 -11 2094 116 20 3 chr3 215759049 215759342 -2277816 + AluSx SINE Alu 1 298 -14 1429 179 150 38 chr3 215759646 215760018 -2277140 - MLT1C LTR MaLR -1 466 40 2226 100 7 3 chr3 215760018 215760317 -2276841 - AluSx SINE Alu -12 300 1 1429 179 150 38 chr3 215760317 215760363 -2276795 - MLT1C LTR MaLR -427 40 1 387 336 82 30 chr3 215760363 215760595 -2276563 + L2 LINE L2 3055 3298 -15 241 276 75 119 chr3 215760609 215760748 -2276410 + L3 LINE CR1 1206 1329 -248 2451 86 3 0 chr3 215760748 215761052 -2276106 - AluSx SINE Alu -7 305 1 241 276 75 119 chr3 215761052 215761180 -2275978 + L3 LINE CR1 1329 1461 -116 293 197 54 14 chr3 215762415 215762562 -2274596 + (TA)n Simple_repeat Simple_repeat 1 153 0 239 260 0 13 chr3 215762638 215762715 -2274443 + (TA)n Simple_repeat Simple_repeat 1 76 0 2231 169 36 10 chr3 215762938 215763351 -2273807 - MSTA LTR MaLR 0 428 5 274 327 125 44 chr3 215763365 215763637 -2273521 - L2 LINE L2 -3 3269 2976 1405 122 0 5 chr3 215764141 215764338 -2272820 - AluSg/x SINE Alu -5 305 110 682 261 63 54 chr3 215764428 215764709 -2272449 - MLT1C LTR MaLR -125 342 56 2247 113 0 0 chr3 215764709 215765002 -2272156 + AluSx SINE Alu 1 293 -19 682 261 63 54 chr3 215765002 215765054 -2272104 - MLT1C LTR MaLR -411 56 6 2267 91 0 36 chr3 215765784 215766093 -2271065 - AluSx SINE Alu -1 311 14 1665 146 4 11 chr3 215766354 215766614 -2270544 + AluJb SINE Alu 1 258 -54 395 273 16 23 chr3 215766748 215766876 -2270282 - MIR3 SINE MIR -43 165 39 2264 114 3 0 chr3 215767067 215767374 -2269784 + AluSq SINE Alu 1 308 -5 691 272 51 0 chr3 215767615 215767810 -2269348 - MIR SINE MIR -1 261 57 2377 84 0 0 chr3 215767827 215768135 -2269023 - AluSx SINE Alu 0 308 1 219 286 14 71 chr3 215768136 215768206 -2268952 - MIR SINE MIR -195 67 2 243 299 56 9 chr3 215768228 215768335 -2268823 + L2 LINE L2 2715 2826 -488 283 316 42 0 chr3 215768343 215768438 -2268720 + MIR SINE MIR 94 192 -70 2293 121 0 0 chr3 215768719 215769017 -2268141 - AluSx SINE Alu -14 298 1 272 182 0 18 chr3 215769149 215769204 -2267954 + Tigger5 DNA MER2_type 2254 2307 -16 704 182 0 8 chr3 215769238 215769370 -2267788 - FLAM_C SINE Alu 0 133 3 252 59 0 0 chr3 215769371 215769405 -2267753 + Tigger5 DNA MER2_type 2290 2323 0 3591 67 16 0 chr3 215769600 215770051 -2267107 - LTR22A LTR ERVK 0 458 1 1037 236 49 56 chr3 215770817 215770908 -2266250 + L1MC5 LINE L1 5574 5664 -2144 792 208 0 0 chr3 215770908 215771038 -2266120 + FLAM_C SINE Alu 2 131 -2 1037 236 49 56 chr3 215771038 215771336 -2265822 + L1MC5 LINE L1 5664 5960 -1848 2183 130 54 23 chr3 215771687 215772040 -2265118 + THE1B LTR MaLR 1 364 0 12546 79 3 1 chr3 215772040 215773617 -2263541 + THE1B-int LTR MaLR 1 1580 0 2205 135 33 28 chr3 215773617 215773979 -2263179 + THE1B LTR MaLR 1 364 0 738 210 28 47 chr3 215774174 215774388 -2262770 + L1MC5 LINE L1 6650 6859 -1102 559 187 94 35 chr3 215774388 215774559 -2262599 + L1MC5 LINE L1 7234 7414 -547 1713 183 7 3 chr3 215774563 215774848 -2262310 + AluJo SINE Alu 9 294 -18 614 127 15 97 chr3 215774866 215775000 -2262158 + FLAM_A SINE Alu 20 142 0 538 213 91 44 chr3 215775012 215775751 -2261407 + L1MC5 LINE L1 6876 7835 -126 2504 84 3 0 chr3 215775751 215776059 -2261099 - AluSx SINE Alu -3 309 1 538 213 91 44 chr3 215776059 215776142 -2261016 + L1MC5 LINE L1 7835 7913 -48 222 37 0 0 chr3 215776148 215776175 -2260983 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1548 161 19 55 chr3 215776227 215776537 -2260621 - AluJb SINE Alu -13 299 1 433 328 104 10 chr3 215776537 215776738 -2260420 + MIR SINE MIR 21 240 -22 814 130 0 0 chr3 215777054 215777169 -2259989 + FLAM_C SINE Alu 3 117 -16 2178 97 0 17 chr3 215777180 215777480 -2259678 - AluSx SINE Alu -17 295 1 299 216 50 93 chr3 215777510 215777649 -2259509 + L2 LINE L2 3161 3293 -20 840 205 80 4 chr3 215778093 215778332 -2258826 - AluSx SINE Alu -21 291 35 772 109 29 0 chr3 215778580 215778717 -2258441 - MSTA LTR MaLR -283 145 5 258 331 125 44 chr3 215778731 215779003 -2258155 - L2 LINE L2 -3 3269 2976 2295 101 3 3 chr3 215779507 215779814 -2257344 - AluSx SINE Alu -5 307 1 231 116 93 0 chr3 215779817 215779860 -2257298 - MLT1C LTR MaLR -420 47 1 387 336 82 30 chr3 215779860 215780092 -2257066 + L2 LINE L2 3055 3298 -15 241 276 75 119 chr3 215780106 215780245 -2256913 + L3 LINE CR1 1206 1329 -248 2451 86 3 0 chr3 215780245 215780549 -2256609 - AluSx SINE Alu -7 305 1 241 276 75 119 chr3 215780549 215780677 -2256481 + L3 LINE CR1 1329 1461 -116 248 229 0 57 chr3 215781931 215782053 -2255105 + (TTAAA)n Simple_repeat Simple_repeat 2 116 0 239 260 0 13 chr3 215782135 215782212 -2254946 + (TA)n Simple_repeat Simple_repeat 1 76 0 1728 203 51 15 chr3 215782435 215782844 -2254314 - MSTA LTR MaLR 0 428 5 545 277 126 27 chr3 215784014 215784147 -2253011 + L1ME4a LINE L1 5720 5838 -283 2328 98 0 0 chr3 215784147 215784461 -2252697 + AluSq SINE Alu 1 314 0 545 277 126 27 chr3 215784461 215784691 -2252467 + L1ME4a LINE L1 5838 6120 -1 243 230 142 108 chr3 215785214 215785362 -2251796 + MIR3 SINE MIR 24 176 -32 2269 110 0 3 chr3 215785439 215785749 -2251409 + AluSc SINE Alu 1 309 0 320 256 137 8 chr3 215786507 215786624 -2250534 - MER5A DNA MER1_type -57 132 1 686 181 9 0 chr3 215786696 215786812 -2250346 - FLAM_C SINE Alu -16 117 1 422 256 70 50 chr3 215786944 215787143 -2250015 - AluSg/x SINE Alu -11 299 97 2241 94 0 36 chr3 215788259 215788568 -2248590 - AluSx SINE Alu -1 311 14 2318 47 43 0 chr3 215788827 215789104 -2248054 + AluY SINE Alu 1 289 -22 756 175 63 74 chr3 215789595 215789719 -2247439 + MER5A DNA MER1_type 1 125 -64 2195 96 7 0 chr3 215789719 215790040 -2247118 - AluSx SINE Alu 0 323 1 756 175 63 74 chr3 215790040 215790103 -2247055 + MER5A DNA MER1_type 125 187 -2 567 237 8 0 chr3 215790136 215790254 -2246904 + MER5B DNA MER1_type 1 119 -59 378 183 0 12 chr3 215790257 215790339 -2246819 - AluJ/FRAM SINE Alu -2 300 220 839 112 7 77 chr3 215790375 215790518 -2246640 + AluJb SINE Alu 1 133 -179 208 250 0 0 chr3 215790523 215790571 -2246587 - MER5B DNA MER1_type -129 49 2 272 111 111 48 chr3 215790902 215790965 -2246193 - L2 LINE L2 -212 3060 2994 478 199 207 95 chr3 215791112 215791469 -2245689 - MER34C LTR ERV1 -144 441 45 2088 108 49 0 chr3 215791545 215791833 -2245325 - AluSg SINE Alu -8 302 1 621 303 233 19 chr3 215792201 215792930 -2244228 + L2 LINE L2 1861 2745 -569 760 140 0 0 chr3 215792947 215793054 -2244104 + FLAM_C SINE Alu 11 117 -26 434 319 116 0 chr3 215793098 215793330 -2243828 + L2 LINE L2 2950 3208 -105 784 236 124 13 chr3 215794031 215794264 -2242894 - MIR SINE MIR 0 262 4 22 0 0 0 chr3 215794313 215794335 -2242823 + AT_rich Low_complexity Low_complexity 1 22 0 180 122 0 163 chr3 215794369 215794390 -2242768 - MIR SINE MIR -85 177 167 1622 149 188 19 chr3 215794390 215794758 -2242400 - MSTB1 LTR MaLR -2 430 1 180 122 0 163 chr3 215794758 215794785 -2242373 - MIR SINE MIR -95 167 137 2064 129 3 43 chr3 215794798 215795123 -2242035 - AluSx SINE Alu 0 312 1 25 51 0 0 chr3 215795129 215795168 -2241990 + AT_rich Low_complexity Low_complexity 1 39 0 467 275 0 9 chr3 215795168 215795277 -2241881 - MIR SINE MIR -136 126 19 404 216 104 52 chr3 215795990 215796057 -2241101 - MIR SINE MIR -41 167 105 2429 81 72 23 chr3 215796057 215796404 -2240754 + THE1B LTR MaLR 1 364 0 404 216 104 52 chr3 215796404 215796470 -2240688 - MIR SINE MIR -103 105 27 543 121 0 0 chr3 215796575 215796674 -2240484 + (TAGA)n Simple_repeat Simple_repeat 2 100 0 724 284 144 30 chr3 215796724 215797160 -2239998 + L1MC4a LINE L1 5520 6005 -1803 2270 120 0 0 chr3 215797627 215797928 -2239230 + AluSx SINE Alu 1 301 -11 2305 109 0 0 chr3 215798083 215798376 -2238782 + AluSx SINE Alu 1 293 -19 2442 85 0 3 chr3 215799154 215799461 -2237697 - AluSx SINE Alu -6 306 1 2044 92 25 51 chr3 215800031 215800178 -2236980 + AluSq SINE Alu 1 150 -163 2310 90 7 7 chr3 215800178 215800478 -2236680 + AluSp SINE Alu 1 300 -13 2044 92 25 51 chr3 215800478 215800645 -2236513 + AluSq SINE Alu 150 307 -6 1277 117 21 5 chr3 215801004 215801192 -2235966 - AluSc SINE Alu -1 308 118 261 243 36 50 chr3 215801320 215801460 -2235698 + CT-rich Low_complexity Low_complexity 3 140 0 2288 97 3 25 chr3 215801460 215801779 -2235379 - AluSx SINE Alu 0 312 1 2467 106 0 0 chr3 215802319 215802631 -2234527 + AluSx SINE Alu 1 312 0 2328 116 0 0 chr3 215802787 215803098 -2234060 + AluSx SINE Alu 1 311 -1 223 289 132 8 chr3 215803778 215803899 -2233259 - MIR SINE MIR -1 261 126 444 250 78 0 chr3 215803913 215803985 -2233173 + MIR SINE MIR 123 188 -74 1011 31 0 0 chr3 215803985 215804112 -2233046 + (TG)n Simple_repeat Simple_repeat 2 128 0 444 250 78 0 chr3 215804112 215804167 -2232991 + MIR SINE MIR 188 260 -2 3211 179 125 16 chr3 215805159 215805182 -2231976 - L1MB8 LINE L1 -127 6051 6032 2787 20 0 0 chr3 215805182 215805527 -2231631 - AluYb8 SINE Alu 0 345 1 3211 179 125 16 chr3 215805527 215806309 -2230849 - L1MB8 LINE L1 -146 6032 5196 325 254 154 39 chr3 215806606 215806736 -2230422 - MIR SINE MIR -83 179 35 183 337 67 0 chr3 215807120 215807209 -2229949 - L2 LINE L2 -1093 2221 2127 1551 84 0 10 chr3 215807785 215807987 -2229171 + AluSg/x SINE Alu 94 293 -19 1039 164 98 12 chr3 215808205 215808449 -2228709 + L1MB8 LINE L1 5914 6178 0 1827 146 108 6 chr3 215808475 215808837 -2228321 + MSTA LTR MaLR 1 399 -29 847 92 0 0 chr3 215808839 215808948 -2228210 - AluSg/x SINE Alu -8 302 194 1675 98 154 23 chr3 215809711 215809977 -2227181 + AluSg1 SINE Alu 1 301 -8 452 233 121 0 chr3 215809983 215810099 -2227059 - L2 LINE L2 -3 3310 3181 597 324 81 0 chr3 215810182 215810441 -2226717 - L2 LINE L2 -901 2413 2134 307 278 18 33 chr3 215810459 215810600 -2226558 - MIR SINE MIR -51 157 20 2100 110 18 4 chr3 215810614 215810918 -2226240 - AluSx SINE Alu 0 308 1 408 226 39 0 chr3 215811039 215811141 -2226017 + MLT1D LTR MaLR 1 106 -399 2165 73 20 40 chr3 215811142 215811443 -2225715 - AluSx SINE Alu -7 305 11 1830 138 14 17 chr3 215812362 215812652 -2224506 - AluJo SINE Alu -23 289 1 494 0 33 0 chr3 215812658 215812719 -2224439 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 2131 108 11 0 chr3 215812725 215813003 -2224155 - AluSq SINE Alu -32 281 1 328 175 53 79 chr3 215813011 215813125 -2224033 - L1MC5 LINE L1 -211 7750 7640 22 0 0 0 chr3 215813546 215813568 -2223590 + AT_rich Low_complexity Low_complexity 1 22 0 256 291 13 13 chr3 215813986 215814065 -2223093 - MIR3 SINE MIR -9 199 121 2418 92 0 3 chr3 215814160 215814465 -2222693 - AluSg SINE Alu -6 304 1 2244 103 3 0 chr3 215815053 215815353 -2221805 + AluSp SINE Alu 2 302 -11 354 313 182 39 chr3 215815527 215816261 -2220897 - L3 LINE CR1 -53 1524 610 7543 36 6 0 chr3 215816340 215817808 -2219350 - L1PA4 LINE L1 -3 6152 4681 181 282 26 43 chr3 215817889 215818006 -2219152 - MIR SINE MIR -1 261 147 216 253 77 44 chr3 215818070 215818161 -2218997 - L3 LINE CR1 -1126 451 358 377 347 146 11 chr3 215818162 215818430 -2218728 - L3 LINE CR1 -1152 425 122 712 189 8 0 chr3 215819612 215819744 -2217414 - FLAM_C SINE Alu 0 133 1 243 213 0 13 chr3 215819749 215819824 -2217334 - L1ME4a LINE L1 -2 6119 6046 2259 111 3 0 chr3 215819968 215820265 -2216893 - AluSx SINE Alu -14 298 1 301 319 7 58 chr3 215821569 215821707 -2215451 + MIR SINE MIR 7 137 -125 208 308 0 0 chr3 215821814 215821866 -2215292 - L2 LINE L2 -8 3264 3213 193 276 26 53 chr3 215822725 215822801 -2214357 - MIR SINE MIR -103 105 32 183 296 126 52 chr3 215822870 215823005 -2214153 + MIR SINE MIR 68 212 -50 * 706 236 67 26 chr3 215822981 215823176 -2213982 - MIR SINE MIR -4 258 56 197 333 16 0 chr3 215823195 215823258 -2213900 + MIR SINE MIR 187 250 -12 450 204 0 83 chr3 215823262 215823280 -2213878 - LTR40c LTR ERVL 0 462 444 2185 131 3 3 chr3 215823280 215823592 -2213566 + AluSx SINE Alu 1 312 0 450 204 0 83 chr3 215823592 215823681 -2213477 - LTR40c LTR ERVL -18 444 364 2272 108 3 0 chr3 215823793 215824088 -2213070 - AluSg SINE Alu -14 296 1 2782 155 30 2 chr3 215824088 215824579 -2212579 - L1MC1 LINE L1 -217 6116 5612 420 111 182 40 chr3 215824581 215824680 -2212478 + MLT1A2 LTR MaLR 6 118 -272 1110 209 59 53 chr3 215824694 215824888 -2212270 - MER21B LTR ERV1 -57 806 608 2212 152 29 52 chr3 215824888 215825330 -2211828 + MSTB1 LTR MaLR 1 432 0 1110 209 59 53 chr3 215825330 215825490 -2211668 - MER21B LTR ERV1 -255 608 450 955 98 0 45 chr3 215825492 215825625 -2211533 + FLAM_C SINE Alu 1 127 -16 1647 159 50 63 chr3 215825634 215825845 -2211313 - MLT1A1 LTR MaLR -6 359 154 2352 97 0 7 chr3 215825845 215826153 -2211005 - AluSx SINE Alu -6 306 1 1647 159 50 63 chr3 215826153 215826305 -2210853 - MLT1A1 LTR MaLR -211 154 1 1405 239 66 42 chr3 215826305 215826751 -2210407 - MER21B LTR ERV1 -406 457 1 448 237 38 8 chr3 215826882 215827013 -2210145 + MLT1B LTR MaLR 197 331 -59 1938 170 48 24 chr3 215827128 215827173 -2209985 - L1MC/D LINE L1 -724 5620 5578 2307 110 0 3 chr3 215827173 215827473 -2209685 + AluSq SINE Alu 6 304 -9 1938 170 48 24 chr3 215827473 215828154 -2209004 - L1MC/D LINE L1 -766 5578 4871 198 0 0 0 chr3 215828162 215828184 -2208974 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 * 219 69 0 0 chr3 215828183 215828212 -2208946 + (TG)n Simple_repeat Simple_repeat 2 30 0 934 114 0 0 chr3 215828212 215828335 -2208823 - FLAM_C SINE Alu -20 123 1 369 0 0 0 chr3 215828490 215828531 -2208627 + (TA)n Simple_repeat Simple_repeat 2 42 0 2286 112 0 13 chr3 215828531 215828827 -2208331 - AluSx SINE Alu -18 294 1 228 135 0 0 chr3 215829452 215829489 -2207669 + (TG)n Simple_repeat Simple_repeat 2 38 0 851 124 0 72 chr3 215829808 215829961 -2207197 + FLAM_C SINE Alu 1 142 -1 2340 96 3 7 chr3 215829979 215830282 -2206876 - AluSx SINE Alu -10 302 1 2328 91 0 10 chr3 215830601 215830897 -2206261 + AluSc SINE Alu 1 293 -16 2408 104 0 0 chr3 215831641 215831977 -2205181 - AluSc SINE Alu 0 336 1 1277 277 131 16 chr3 215832083 215832293 -2204865 + L2 LINE L2 2082 2266 -1048 1998 132 7 0 chr3 215832293 215832589 -2204569 + AluSx SINE Alu 6 303 -9 1277 277 131 16 chr3 215832589 215832883 -2204275 + L2 LINE L2 2266 2644 -670 1055 264 172 25 chr3 215832939 215833370 -2203788 + L2 LINE L2 2813 3306 -7 2346 112 0 0 chr3 215833394 215833698 -2203460 + AluSx SINE Alu 3 306 -6 313 324 103 28 chr3 215833700 215833845 -2203313 - MIR3 SINE MIR -37 171 16 419 253 41 27 chr3 215833910 215834056 -2203102 + MER112 DNA MER1_type 108 255 -5 2227 102 0 60 chr3 215834056 215834389 -2202769 + AluSq SINE Alu 1 313 0 2338 113 3 0 chr3 215834436 215834746 -2202412 + AluSx SINE Alu 1 311 -1 561 233 175 56 chr3 215835738 215836147 -2201011 + LTR33 LTR ERVL 26 518 -3 385 333 26 0 chr3 215836471 215836624 -2200534 - MIR3 SINE MIR -12 196 40 1223 75 0 0 chr3 215837616 215837777 -2199381 - L1PA5 LINE L1 0 6154 5994 2064 133 17 3 chr3 215838482 215838783 -2198375 - AluSq SINE Alu -8 305 1 549 193 28 17 chr3 215838842 215839018 -2198140 + CT-rich Low_complexity Low_complexity 1 178 0 1872 150 14 7 chr3 215839076 215839362 -2197796 - AluSx SINE Alu -17 295 8 2123 121 13 10 chr3 215839446 215839751 -2197407 - AluSx SINE Alu -6 306 1 497 236 0 24 chr3 215839751 215839878 -2197280 + MIR SINE MIR 138 261 -1 469 287 59 73 chr3 215840195 215840271 -2196887 + L1MC4a LINE L1 5524 5600 -521 2052 113 3 7 chr3 215840271 215840588 -2196570 - AluSx SINE Alu 0 316 1 469 287 59 73 chr3 215840588 215840718 -2196440 + L1MC4a LINE L1 5600 5730 -391 1993 129 0 11 chr3 215840718 215840998 -2196160 + AluSx SINE Alu 36 312 0 469 287 59 73 chr3 215840998 215841196 -2195962 + L1MC4a LINE L1 5730 5925 -196 1908 217 19 17 chr3 215841204 215841687 -2195471 - L1ME1 LINE L1 -5 6161 5678 1753 151 113 80 chr3 215841685 215842094 -2195064 - L1MD1 LINE L1 0 6242 5848 * 276 30 0 0 chr3 215842094 215842127 -2195031 + (TA)n Simple_repeat Simple_repeat 2 34 0 315 0 0 0 chr3 215842128 215842163 -2194995 + (CA)n Simple_repeat Simple_repeat 1 35 0 1753 151 113 80 chr3 215842163 215842337 -2194821 - L1MD1 LINE L1 -393 5849 5604 2101 105 0 4 chr3 215842341 215842660 -2194498 - AluY SINE Alu 0 323 6 315 100 33 67 chr3 215842665 215842725 -2194433 + L1MC/D LINE L1 5581 5638 -695 474 244 38 8 chr3 215842820 215842951 -2194207 - MLT1B LTR MaLR -59 331 197 1359 246 66 42 chr3 215843084 215843530 -2193628 + MER21B LTR ERV1 1 457 -406 340 212 71 18 chr3 215843530 215843643 -2193515 + MLT1A1 LTR MaLR 1 119 -246 449 239 133 14 chr3 215844046 215844242 -2192916 + MIR SINE MIR 3 222 -40 249 203 72 0 chr3 215844263 215844332 -2192826 + MIR SINE MIR 59 132 -76 382 189 41 90 chr3 215844708 215844830 -2192328 - MIR SINE MIR -57 205 90 212 235 39 0 chr3 215845265 215845316 -2191842 + MIR3 SINE MIR 117 169 -39 2423 95 0 0 chr3 215846665 215846961 -2190197 - AluSx SINE Alu -16 296 1 1330 146 42 142 chr3 215846963 215847174 -2189984 - AluJo SINE Alu -5 297 129 297 0 0 0 chr3 215847174 215847207 -2189951 + (TG)n Simple_repeat Simple_repeat 2 34 0 1330 146 42 142 chr3 215847207 215847325 -2189833 - AluJo SINE Alu -173 129 1 271 268 56 0 chr3 215847750 215847821 -2189337 + L2 LINE L2 3154 3228 -44 203 196 22 0 chr3 215848045 215848091 -2189067 + L2 LINE L2 3208 3254 -18 2094 112 9 53 chr3 215848639 215848774 -2188384 + AluSx SINE Alu 1 140 -172 2305 102 3 0 chr3 215848774 215849077 -2188081 + AluSp SINE Alu 1 304 -9 2094 112 9 53 chr3 215849077 215849262 -2187896 + AluSx SINE Alu 140 307 -5 484 222 10 0 chr3 215850141 215850240 -2186918 + MIR SINE MIR 49 148 -60 379 303 39 13 chr3 215850280 215850435 -2186723 + L2 LINE L2 1258 1416 -1898 2261 126 3 0 chr3 215850440 215850749 -2186409 + AluSx SINE Alu 1 310 -2 810 150 31 0 chr3 215850763 215850890 -2186268 + FLAM_C SINE Alu 1 131 -2 730 314 108 41 chr3 215851002 215851492 -2185666 + L2 LINE L2 1689 2211 -1103 3638 158 55 105 chr3 215851565 215851683 -2185475 + MER21A LTR ERV1 24 146 -785 1746 149 40 17 chr3 215851683 215851979 -2185179 - AluJb SINE Alu -9 303 1 3638 158 55 105 chr3 215851979 215852415 -2184743 + MER21A LTR ERV1 146 514 -417 2477 90 0 0 chr3 215852415 215852714 -2184444 - AluSq SINE Alu -14 299 1 3638 158 55 105 chr3 215852714 215853094 -2184064 + MER21A LTR ERV1 514 912 -19 197 370 0 0 chr3 215853236 215853309 -2183849 - MIR SINE MIR -5 257 185 1864 67 0 5 chr3 215853309 215853533 -2183625 + AluSq SINE Alu 1 223 -90 253 281 0 0 chr3 215853860 215853924 -2183234 + (CA)n Simple_repeat Simple_repeat 1 64 0 2189 116 36 3 chr3 215854178 215854481 -2182677 + AluSq SINE Alu 1 313 0 214 154 0 26 chr3 215855134 215855173 -2181985 + MIR SINE MIR 120 157 -105 347 279 7 93 chr3 215855217 215855357 -2181801 + MIR SINE MIR 2 129 -133 1347 117 0 0 chr3 215856374 215856553 -2180605 - AluSg/x SINE Alu 0 312 134 2224 113 0 13 chr3 215856553 215856862 -2180296 - AluSq SINE Alu -8 305 1 2391 95 7 0 chr3 215856888 215857192 -2179966 - AluSx SINE Alu -6 306 1 2387 69 14 0 chr3 215857192 215857483 -2179675 - AluSp SINE Alu -17 296 2 306 250 61 49 chr3 215857524 215857688 -2179470 - L1MC4 LINE L1 -7 8035 7870 2327 95 0 3 chr3 215857905 215858229 -2178929 - AluSq SINE Alu 0 313 1 2268 121 0 0 chr3 215858231 215858528 -2178630 - AluSq SINE Alu -16 297 1 423 263 83 32 chr3 215858641 215858797 -2178361 + MER5B DNA MER1_type 1 164 -14 209 295 202 47 chr3 215859510 215859639 -2177519 - MIR3 SINE MIR -10 198 50 2013 159 0 0 chr3 215860140 215860436 -2176722 + AluJo SINE Alu 1 296 -16 1929 148 7 7 chr3 215862727 215863024 -2174134 + AluSx SINE Alu 1 297 -15 328 339 102 12 chr3 215863459 215863629 -2173529 + MIR SINE MIR 40 224 -38 206 318 84 9 chr3 215863746 215863853 -2173305 - L3 LINE CR1 -72 1505 1391 2124 85 57 0 chr3 215863874 215864157 -2173001 - AluSq SINE Alu -14 299 1 304 206 165 10 chr3 215864329 215864426 -2172732 + MIR3 SINE MIR 49 160 -48 2408 104 0 0 chr3 215865439 215865775 -2171383 - AluSc SINE Alu 0 336 1 1230 283 131 16 chr3 215865881 215866091 -2171067 + L2 LINE L2 2082 2266 -1048 2114 118 3 0 chr3 215866091 215866387 -2170771 + AluSx SINE Alu 6 302 -10 1230 283 131 16 chr3 215866387 215866681 -2170477 + L2 LINE L2 2266 2644 -670 1018 269 172 25 chr3 215866737 215867168 -2169990 + L2 LINE L2 2813 3306 -7 2346 112 0 0 chr3 215867192 215867496 -2169662 + AluSx SINE Alu 3 306 -6 313 324 103 28 chr3 215867498 215867643 -2169515 - MIR3 SINE MIR -37 171 16 419 253 41 27 chr3 215867708 215867854 -2169304 + MER112 DNA MER1_type 108 255 -5 2260 100 0 54 chr3 215867854 215868185 -2168973 + AluSq SINE Alu 1 313 0 2344 113 3 0 chr3 215868235 215868545 -2168613 + AluSx SINE Alu 1 311 -1 573 229 175 56 chr3 215869537 215869946 -2167212 + LTR33 LTR ERVL 26 518 -3 385 333 26 0 chr3 215870270 215870423 -2166735 - MIR3 SINE MIR -12 196 40 1223 75 0 0 chr3 215871414 215871575 -2165583 - L1PA5 LINE L1 0 6154 5994 2261 96 13 13 chr3 215872279 215872582 -2164576 - AluSg SINE Alu -7 303 1 384 281 141 30 chr3 215872651 215872786 -2164372 + L2 LINE L2 3164 3313 0 2451 71 3 0 chr3 215872814 215873109 -2164049 + AluSp SINE Alu 1 296 -17 2413 95 7 0 chr3 215873109 215873415 -2163743 + AluSx SINE Alu 1 308 -4 195 129 0 0 chr3 215874002 215874033 -2163125 + (A)n Simple_repeat Simple_repeat 1 31 0 2130 89 50 0 chr3 215874089 215874370 -2162788 + AluSq SINE Alu 2 296 -17 728 147 23 0 chr3 215874498 215874627 -2162531 - FLAM_A SINE Alu -1 132 1 262 319 43 85 chr3 215875148 215875208 -2161950 + L3 LINE CR1 1433 1494 -83 2079 124 7 0 chr3 215875208 215875499 -2161659 + AluSx SINE Alu 1 293 -19 262 319 43 85 chr3 215875499 215875579 -2161579 + L3 LINE CR1 1494 1567 -10 2412 69 3 3 chr3 215875592 215875881 -2161277 + AluY SINE Alu 7 295 -16 1780 166 0 47 chr3 215875950 215876134 -2161024 - AluJo SINE Alu -7 305 141 2282 100 0 0 chr3 215876134 215876423 -2160735 - AluSx SINE Alu -22 290 2 1780 166 0 47 chr3 215876423 215876558 -2160600 - AluJo SINE Alu -171 141 1 298 220 20 80 chr3 215876558 215876658 -2160500 + MIR SINE MIR 109 202 -60 224 347 66 8 chr3 215876900 215877021 -2160137 - L2 LINE L2 -5 3267 3140 4582 105 15 3 chr3 215877338 215878004 -2159154 + LTR8 LTR ERV1 1 674 -17 359 242 16 105 chr3 215878052 215878176 -2158982 - MER5A DNA MER1_type 0 189 77 2286 106 3 0 chr3 215878371 215878672 -2158486 + AluSx SINE Alu 1 302 -10 468 261 120 0 chr3 215878739 215878881 -2158277 + MIR SINE MIR 101 259 -3 536 267 189 0 chr3 215878904 215879084 -2158074 + MIR SINE MIR 15 228 -34 287 181 60 48 chr3 215879716 215879799 -2157359 + MER5B DNA MER1_type 95 178 0 222 304 17 61 chr3 215879943 215880058 -2157100 - MER5A DNA MER1_type 0 189 80 1319 128 0 0 chr3 215881717 215881897 -2155261 - AluSq SINE Alu 0 313 134 274 210 168 15 chr3 215881982 215882112 -2155046 - MIR SINE MIR -68 140 35 2046 125 35 0 chr3 215883102 215883391 -2153767 - AluSx SINE Alu -13 299 1 21 0 0 0 chr3 215883394 215883415 -2153743 + AT_rich Low_complexity Low_complexity 1 21 0 1379 123 31 40 chr3 215883415 215883643 -2153515 - AluSx SINE Alu -86 226 1 1590 167 84 0 chr3 215883646 215883921 -2153237 - AluJb SINE Alu -14 298 1 337 271 76 0 chr3 215883922 215884040 -2153118 - MLT1B LTR MaLR -263 127 1 200 307 47 47 chr3 215884048 215884175 -2152983 + L2 LINE L2 2620 2746 -568 2403 85 3 0 chr3 215884204 215884498 -2152660 - AluSp SINE Alu -16 297 3 1381 216 35 47 chr3 215884498 215884900 -2152258 + MLT2C1 LTR ERVL 1 397 0 28 0 0 0 chr3 215884955 215884983 -2152175 + AT_rich Low_complexity Low_complexity 1 28 0 1433 141 0 0 chr3 215884988 215885186 -2151972 + AluSg/x SINE Alu 101 298 -14 1658 235 54 12 chr3 215885186 215885646 -2151512 + ERVL LTR ERVL 347 893 -4871 1109 178 99 48 chr3 215885679 215885971 -2151187 - MLT1A1 LTR MaLR -58 307 1 5784 179 52 20 chr3 215885971 215886695 -2150463 + ERVL LTR ERVL 3883 4657 -1107 563 131 262 28 chr3 215886695 215886802 -2150356 - FLAM_C SINE Alu -1 132 1 5784 179 52 20 chr3 215886802 215887188 -2149970 + ERVL LTR ERVL 4657 5029 -735 1138 224 67 77 chr3 215887337 215887519 -2149639 + MLT2C1 LTR ERVL 1 183 -214 1921 127 28 10 chr3 215887519 215887690 -2149468 - AluJb SINE Alu -7 305 125 2387 83 0 3 chr3 215887690 215887990 -2149168 - AluY SINE Alu -12 299 1 1921 127 28 10 chr3 215887990 215888109 -2149049 - AluJb SINE Alu -187 125 10 1138 224 67 77 chr3 215888109 215888327 -2148831 + MLT2C1 LTR ERVL 183 397 0 2295 96 7 0 chr3 215889480 215889771 -2147387 + AluSx SINE Alu 1 293 -19 448 290 70 55 chr3 215890328 215890388 -2146770 + L3 LINE CR1 1311 1369 -208 2151 81 66 0 chr3 215890388 215890660 -2146498 - AluY SINE Alu -21 290 1 448 290 70 55 chr3 215890660 215890799 -2146359 + L3 LINE CR1 1369 1513 -64 882 143 0 0 chr3 215890963 215891096 -2146062 - FLAM_C SINE Alu 0 133 1 259 223 142 108 chr3 215891173 215891321 -2145837 - MIR3 SINE MIR -32 176 24 185 291 0 36 chr3 215891641 215891696 -2145462 - L3b LINE CR1 -1 1582 1530 545 277 126 27 chr3 215891847 215892077 -2145081 - L1ME4a LINE L1 -1 6120 5838 2327 98 0 0 chr3 215892077 215892391 -2144767 - AluSq SINE Alu 0 314 1 545 277 126 27 chr3 215892391 215892524 -2144634 - L1ME4a LINE L1 -283 5838 5720 2218 84 0 45 chr3 215893924 215894232 -2142926 + AluSc SINE Alu 1 294 -15 920 317 54 15 chr3 215894524 215894931 -2142227 + L3 LINE CR1 1143 1565 -12 492 242 43 91 chr3 215895967 215896153 -2141005 + MIR3 SINE MIR 20 196 -12 411 320 31 8 chr3 215896197 215896325 -2140833 - L2 LINE L2 -5 3267 3137 2179 105 14 10 chr3 215896345 215896639 -2140519 + AluSg SINE Alu 1 295 -15 981 121 81 0 chr3 215896639 215896788 -2140370 + AluSg/x SINE Alu 134 294 -18 264 321 63 68 chr3 215896861 215897098 -2140060 - L2 LINE L2 -227 3045 2810 240 167 0 0 chr3 215897493 215897535 -2139623 - MLT1D LTR MaLR -13 492 451 280 75 0 0 chr3 215897749 215897789 -2139369 + MADE1 DNA Mariner 36 75 -5 2275 89 0 0 chr3 215897808 215898113 -2139045 - AluSx SINE Alu 0 313 9 298 104 0 0 chr3 215898115 215898163 -2138995 + MADE1 DNA Mariner 33 80 0 820 150 0 8 chr3 215898211 215898344 -2138814 - FLAM_C SINE Alu -1 132 1 2788 150 41 30 chr3 215898375 215898942 -2138216 + L1MB7 LINE L1 5550 6122 -62 2359 102 0 0 chr3 215898942 215899245 -2137913 - AluSx SINE Alu -9 303 1 1094 89 0 0 chr3 215899245 215899380 -2137778 - AluSq/x SINE Alu -178 135 1 2319 92 0 10 chr3 215899699 215899994 -2137164 + AluSc SINE Alu 1 292 -17 304 206 165 10 chr3 215900744 215900841 -2136317 - MIR3 SINE MIR -48 160 49 2195 94 34 10 chr3 215901013 215901311 -2135847 + AluSq SINE Alu 1 305 -8 1322 123 0 0 chr3 215901311 215901490 -2135668 + AluSg/x SINE Alu 132 310 0 347 279 7 93 chr3 215902512 215902652 -2134506 - MIR SINE MIR -133 129 2 214 154 0 26 chr3 215902696 215902735 -2134423 - MIR SINE MIR -105 157 120 2167 116 36 3 chr3 215903388 215903691 -2133467 - AluSq SINE Alu 0 313 1 216 214 0 0 chr3 215903945 215904001 -2133157 + (TG)n Simple_repeat Simple_repeat 1 56 0 1823 81 5 0 chr3 215904358 215904581 -2132577 - AluSp SINE Alu -88 225 2 2357 101 0 3 chr3 215905167 215905474 -2131684 + AluSg SINE Alu 1 306 -4 240 304 13 13 chr3 215905569 215905648 -2131510 + MIR3 SINE MIR 121 199 -9 22 0 0 0 chr3 215906066 215906088 -2131070 + AT_rich Low_complexity Low_complexity 1 22 0 315 184 53 79 chr3 215906509 215906623 -2130535 + L1MC5 LINE L1 7640 7750 -211 2159 101 11 0 chr3 215906631 215906909 -2130249 + AluSq SINE Alu 1 281 -32 611 37 25 0 chr3 215906915 215906996 -2130162 + (TAGA)n Simple_repeat Simple_repeat 2 84 0 1235 156 23 23 chr3 215907002 215907220 -2129938 + AluJo SINE Alu 1 218 -94 1373 237 16 16 chr3 215907341 215907717 -2129441 - L1ME1 LINE L1 -113 6053 5678 * 2950 153 113 74 chr3 215907715 215908141 -2129017 - L1MD1 LINE L1 0 6242 5834 282 56 0 0 chr3 215908141 215908177 -2128981 + (CA)n Simple_repeat Simple_repeat 2 37 0 2950 153 113 74 chr3 215908177 215908355 -2128803 - L1MD1 LINE L1 -408 5834 5664 2206 89 0 3 chr3 215908355 215908675 -2128483 - AluY SINE Alu 0 319 1 2950 153 113 74 chr3 215908675 215908864 -2128294 - L1MD1 LINE L1 -578 5664 5410 1093 83 0 0 chr3 215908864 215908997 -2128161 - AluSq/x SINE Alu -180 133 1 21 0 0 0 chr3 215908997 215909018 -2128140 + AT_rich Low_complexity Low_complexity 1 21 0 921 83 14 0 chr3 215909036 215909180 -2127978 - L1MC/D LINE L1 -910 5449 5304 247 229 0 0 chr3 215909206 215909254 -2127904 - MER77 LTR ERV1 -6 599 552 462 141 0 0 chr3 215909257 215909321 -2127837 - AluJ/FLAM SINE Alu -245 67 4 1261 236 58 10 chr3 215909324 215909722 -2127436 - L1MD1 LINE L1 -864 5282 4866 1276 227 60 101 chr3 215909779 215910368 -2126790 - MER77 LTR ERV1 -8 597 58 513 148 9 104 chr3 215910544 215910618 -2126540 - U6 snRNA snRNA 0 107 46 2340 85 0 41 chr3 215910618 215910935 -2126223 - AluY SINE Alu -7 304 1 513 148 9 104 chr3 215910935 215910975 -2126183 - U6 snRNA snRNA -61 46 4 468 280 23 14 chr3 215911061 215911275 -2125883 + HAL1 LINE L1 1085 1300 -1207 1413 241 82 12 chr3 215911323 215911738 -2125420 + HAL1 LINE L1 1420 1863 -644 709 226 54 6 chr3 215912120 215912288 -2124870 + MER69A DNA AcHobo 2 177 0 2182 112 23 3 chr3 215912362 215912666 -2124492 - AluSq SINE Alu -3 310 1 796 186 0 0 chr3 215912666 215912790 -2124368 - FLAM_A SINE Alu -5 128 5 2360 103 0 0 chr3 215913186 215913487 -2123671 - AluSx SINE Alu -11 301 1 1285 152 42 142 chr3 215913489 215913700 -2123458 - AluJo SINE Alu -5 297 129 315 0 0 0 chr3 215913700 215913735 -2123423 + (TG)n Simple_repeat Simple_repeat 2 36 0 1285 152 42 142 chr3 215913735 215913853 -2123305 - AluJo SINE Alu -173 129 1 240 278 56 14 chr3 215914278 215914350 -2122808 + L2 LINE L2 3154 3228 -44 203 196 22 0 chr3 215914574 215914620 -2122538 + L2 LINE L2 3208 3254 -18 1005 133 0 0 chr3 215915169 215915304 -2121854 + AluSq/x SINE Alu 1 135 -178 2319 106 3 0 chr3 215915304 215915606 -2121552 + AluSp SINE Alu 1 303 -10 384 217 132 9 chr3 215915653 215915759 -2121399 - MER63 DNA MER1_type -312 750 6 2303 114 0 0 chr3 215916149 215916447 -2120711 - AluSx SINE Alu -14 298 1 318 229 276 0 chr3 215916930 215917035 -2120123 + MIR SINE MIR 11 144 -118 339 175 62 12 chr3 215917100 215917180 -2119978 + MIR SINE MIR 124 207 -55 278 198 30 79 chr3 215917178 215917279 -2119879 + MIR SINE MIR 122 217 -45 * 2070 103 41 3 chr3 215917386 215917678 -2119480 - AluSq SINE Alu -10 303 1 203 182 114 0 chr3 215917689 215917733 -2119425 - L2 LINE L2 -205 3067 3019 285 282 48 58 chr3 215917748 215917851 -2119307 - L2 LINE L2 0 3272 3171 1015 149 0 63 chr3 215917891 215918065 -2119093 - FRAM SINE Alu -2 164 2 872 174 41 82 chr3 215918210 215918297 -2118861 - MER2 DNA MER2_type -135 210 121 2214 101 14 3 chr3 215918297 215918584 -2118574 + AluSx SINE Alu 9 298 -14 872 174 41 82 chr3 215918584 215918715 -2118443 - MER2 DNA MER2_type -224 121 1 716 270 50 76 chr3 215918725 215919196 -2117962 - L2 LINE L2 -255 3017 2551 517 287 117 15 chr3 215919551 215919885 -2117273 - L2 LINE L2 -706 2608 2241 713 241 12 24 chr3 215919894 215920060 -2117098 - AluSg/x SINE Alu -22 290 127 421 281 72 0 chr3 215920161 215920300 -2116858 - L2 LINE L2 -1084 2230 2082 233 119 0 149 chr3 215920370 215920406 -2116752 + (A)n Simple_repeat Simple_repeat 1 24 -33 2408 104 0 0 chr3 215920406 215920713 -2116445 + AluSc SINE Alu 1 307 -2 233 119 0 149 chr3 215920713 215920743 -2116415 + (A)n Simple_repeat Simple_repeat 24 57 0 2328 91 0 10 chr3 215921487 215921783 -2115375 - AluSc SINE Alu -16 293 1 2278 104 3 0 chr3 215922102 215922399 -2114759 + AluSx SINE Alu 1 298 -14 783 159 0 60 chr3 215922421 215922572 -2114586 - FLAM_C SINE Alu 0 143 2 228 135 0 0 chr3 215922892 215922929 -2114229 + (CA)n Simple_repeat Simple_repeat 2 38 0 2286 112 0 13 chr3 215923554 215923850 -2113308 + AluSx SINE Alu 1 294 -18 369 0 0 0 chr3 215923850 215923891 -2113267 + (TA)n Simple_repeat Simple_repeat 1 41 0 934 114 0 0 chr3 215924046 215924169 -2112989 + FLAM_C SINE Alu 1 123 -20 219 69 0 0 chr3 215924169 215924198 -2112960 + (CA)n Simple_repeat Simple_repeat 2 30 0 198 0 0 0 chr3 215924197 215924219 -2112939 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 * 2003 166 48 30 chr3 215924227 215924908 -2112250 + L1MC1 LINE L1 4871 5572 -772 2157 102 0 3 chr3 215924908 215925203 -2111955 - AluSq SINE Alu -9 304 11 2003 166 48 30 chr3 215925203 215925251 -2111907 + L1MC1 LINE L1 5572 5618 -726 237 215 77 0 chr3 215925251 215925316 -2111842 - MLT1B LTR MaLR 0 390 321 483 237 38 8 chr3 215925368 215925499 -2111659 - MLT1B LTR MaLR -59 331 197 236 277 43 64 chr3 215925529 215925623 -2111535 - MLT1B LTR MaLR -186 188 97 1526 239 66 42 chr3 215925630 215926076 -2111082 + MER21B LTR ERV1 1 457 -406 1767 157 50 63 chr3 215926076 215926228 -2110930 + MLT1A1 LTR MaLR 1 154 -211 2201 97 0 7 chr3 215926228 215926536 -2110622 + AluSx SINE Alu 1 306 -6 1767 157 50 63 chr3 215926536 215926747 -2110411 + MLT1A1 LTR MaLR 154 359 -6 885 103 0 0 chr3 215926772 215926889 -2110269 - FLAM_C SINE Alu -26 117 1 1246 202 60 54 chr3 215926891 215927051 -2110107 + MER21B LTR ERV1 450 608 -255 2149 154 29 52 chr3 215927051 215927493 -2109665 - MSTB1 LTR MaLR 0 432 1 1246 202 60 54 chr3 215927493 215927684 -2109474 + MER21B LTR ERV1 608 803 -60 442 111 182 40 chr3 215927701 215927800 -2109358 - MLT1A2 LTR MaLR -272 118 6 3911 150 37 21 chr3 215927802 215928293 -2108865 + L1MC1 LINE L1 5612 6119 -214 2234 103 0 0 chr3 215928293 215928593 -2108565 + AluSg SINE Alu 1 300 -10 3911 150 37 21 chr3 215928593 215928807 -2108351 + L1MC1 LINE L1 6119 6328 -5 201 300 0 133 chr3 215928811 215928857 -2108301 + MIR SINE MIR 154 204 -58 2027 72 0 4 chr3 215928857 215929119 -2108039 - AluSq SINE Alu -52 261 1 201 300 0 133 chr3 215929119 215929192 -2107966 + MIR SINE MIR 204 257 -5 3919 161 52 103 chr3 215929334 215929714 -2107444 - MER21A LTR ERV1 -19 912 514 2263 94 0 3 chr3 215929714 215930013 -2107145 + AluSx SINE Alu 1 298 -14 3919 161 52 103 chr3 215930013 215930449 -2106709 - MER21A LTR ERV1 -417 514 146 1605 149 40 17 chr3 215930449 215930745 -2106413 + AluJb SINE Alu 1 303 -9 3919 161 52 103 chr3 215930745 215930863 -2106295 - MER21A LTR ERV1 -785 146 24 720 314 108 41 chr3 215930936 215931426 -2105732 - L2 LINE L2 -1103 2211 1689 792 150 31 0 chr3 215931538 215931665 -2105493 - FLAM_C SINE Alu -2 131 1 2109 122 3 0 chr3 215931684 215931988 -2105170 - AluSx SINE Alu -7 305 1 373 303 39 13 chr3 215931993 215932148 -2105010 - L2 LINE L2 -1898 1416 1258 386 193 17 51 chr3 215932397 215932573 -2104585 + GA-rich Low_complexity Low_complexity 1 170 0 1759 121 4 0 chr3 215932632 215932881 -2104277 + AluSx SINE Alu 1 250 -62 198 103 0 0 chr3 215932889 215932918 -2104240 + (A)n Simple_repeat Simple_repeat 1 29 0 236 374 53 20 chr3 215933154 215933288 -2103870 - L2 LINE L2 -215 3057 2909 2040 101 3 14 chr3 215933288 215933760 -2103398 - AluSx SINE Alu 0 469 1 236 374 53 20 chr3 215933760 215933870 -2103288 - L2 LINE L2 -363 2909 2804 2304 106 0 0 chr3 215934300 215934612 -2102546 + AluSx SINE Alu 1 312 0 2053 117 3 3 chr3 215934767 215935058 -2102100 + AluSx SINE Alu 1 291 -21 295 216 50 93 chr3 215935502 215935641 -2101517 - L2 LINE L2 -20 3293 3161 2018 127 0 0 chr3 215935671 215935962 -2101196 + AluSx SINE Alu 1 291 -21 1436 126 17 17 chr3 215936068 215936299 -2100859 - AluSx SINE Alu -81 231 1 1628 164 29 6 chr3 215936300 215936612 -2100546 + L1M4 LINE L1 4681 4999 -1147 843 172 65 11 chr3 215936629 215936815 -2100343 + L1MB7 LINE L1 5989 6184 0 916 179 114 0 chr3 215937365 215937549 -2099609 - AluJb SINE Alu -23 289 85 1159 184 28 23 chr3 215937670 215937888 -2099270 - MER20 DNA MER1_type 0 219 1 1727 127 84 0 chr3 215937955 215938230 -2098928 + AluSq SINE Alu 1 298 -15 218 116 23 0 chr3 215938239 215938282 -2098876 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 1591 157 0 18 chr3 215938392 215938708 -2098450 + AluJb SINE Alu 1 311 0 270 250 68 23 chr3 215938769 215938857 -2098301 - MIR SINE MIR -61 201 110 338 277 119 0 chr3 215939122 215939223 -2097935 + L1MC5 LINE L1 7329 7441 -520 242 286 0 75 chr3 215939255 215939402 -2097756 + L1MC4 LINE L1 7537 7672 -370 2456 145 34 27 chr3 215939486 215939927 -2097231 + MER65A LTR ERV1 1 444 -1 339 275 83 39 chr3 215939950 215940179 -2096979 + L1MC4 LINE L1 7804 8042 0 1974 130 0 25 chr3 215940188 215940503 -2096655 + AluSx SINE Alu 1 307 -5 244 307 197 29 chr3 215940841 215940978 -2096180 - MIR3 SINE MIR -6 202 43 1728 157 11 0 chr3 215941261 215941542 -2095616 - AluJb SINE Alu -28 284 1 762 157 0 25 chr3 215941561 215941682 -2095476 - AluJb SINE Alu -193 119 2 1595 188 30 0 chr3 215942412 215942715 -2094443 - AluJo SINE Alu 0 312 1 209 239 22 0 chr3 215943066 215943112 -2094046 - MIR SINE MIR -66 142 96 2196 111 3 0 chr3 215943180 215943478 -2093680 + AluSq SINE Alu 1 299 -14 723 166 6 46 chr3 215943943 215943996 -2093162 - L1MA4 LINE L1 -2 6298 6244 1596 160 20 10 chr3 215943996 215944290 -2092868 - AluSx SINE Alu -15 297 1 723 166 6 46 chr3 215944290 215944411 -2092747 - L1MA4 LINE L1 -56 6244 6131 936 195 12 0 chr3 215944413 215944582 -2092576 - FAM SINE Alu 0 175 5 467 280 140 45 chr3 215944760 215945046 -2092112 - L2 LINE L2 -2 3311 2999 269 348 8 42 chr3 215945039 215945157 -2092001 - MIR SINE MIR -128 134 21 * 1492 162 19 45 chr3 215945157 215945466 -2091692 + AluJb SINE Alu 1 301 -11 222 37 0 0 chr3 215945518 215945545 -2091613 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 565 206 91 46 chr3 215945551 215945634 -2091524 - L1MC5 LINE L1 -48 7913 7835 2352 84 3 0 chr3 215945634 215945942 -2091216 + AluSx SINE Alu 1 309 -3 565 206 91 46 chr3 215945942 215946681 -2090477 - L1MC5 LINE L1 -126 7835 6876 606 127 15 97 chr3 215946693 215946827 -2090331 - FLAM_A SINE Alu 0 142 20 1570 183 7 3 chr3 215946845 215947130 -2090028 - AluJo SINE Alu -18 294 9 601 181 94 35 chr3 215947134 215947305 -2089853 - L1MC5 LINE L1 -547 7414 7234 795 210 28 47 chr3 215947305 215947519 -2089639 - L1MC5 LINE L1 -1102 6859 6650 2177 135 33 28 chr3 215947714 215948076 -2089082 - THE1B LTR MaLR 0 364 1 12445 79 3 1 chr3 215948076 215949653 -2087505 - THE1B-int LTR MaLR 0 1580 1 2154 130 54 23 chr3 215949653 215950006 -2087152 - THE1B LTR MaLR 0 364 1 1114 239 48 56 chr3 215950357 215950655 -2086503 - L1MC5 LINE L1 -1848 5960 5664 771 208 0 0 chr3 215950655 215950785 -2086373 - FLAM_C SINE Alu -2 131 2 1114 239 48 56 chr3 215950785 215950880 -2086278 - L1MC5 LINE L1 -2144 5664 5570 3563 67 16 0 chr3 215951642 215952093 -2085065 + LTR22A LTR ERVK 1 458 0 267 59 0 0 chr3 215952288 215952322 -2084836 - Tigger5 DNA MER2_type 0 2323 2290 727 138 24 8 chr3 215952323 215952446 -2084712 + BC200 scRNA scRNA 3 127 -73 1193 77 0 0 chr3 215952569 215952724 -2084434 + THE1B-int LTR MaLR 1426 1580 0 2213 130 33 28 chr3 215952724 215953086 -2084072 + THE1B LTR MaLR 1 364 0 795 210 28 47 chr3 215953281 215953495 -2083663 + L1MC5 LINE L1 6650 6859 -1102 591 181 94 35 chr3 215953495 215953666 -2083492 + L1MC5 LINE L1 7234 7414 -547 1554 186 7 3 chr3 215953670 215953955 -2083203 + AluJo SINE Alu 9 294 -18 606 127 15 97 chr3 215953973 215954107 -2083051 + FLAM_A SINE Alu 20 142 0 560 214 90 49 chr3 215954118 215954861 -2082297 + L1MC5 LINE L1 6876 7835 -126 2259 88 3 0 chr3 215954861 215955158 -2082000 - AluSx SINE Alu -14 298 1 560 214 90 49 chr3 215955158 215955241 -2081917 + L1MC5 LINE L1 7835 7913 -48 201 74 0 0 chr3 215955247 215955274 -2081884 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1424 170 19 45 chr3 215955326 215955637 -2081521 - AluJb SINE Alu -9 303 1 449 327 102 10 chr3 215955637 215955842 -2081316 + MIR SINE MIR 21 244 -18 24 67 0 0 chr3 215956788 215956833 -2080325 + GC_rich Low_complexity Low_complexity 1 45 0 238 360 137 13 chr3 215959302 215959455 -2077703 - L2 LINE L2 -190 3082 2911 2150 89 7 0 chr3 215959460 215959769 -2077389 + AluSx SINE Alu 1 311 0 584 218 140 72 chr3 215961095 215961388 -2075770 - L2 LINE L2 -6 3307 2995 944 228 52 0 chr3 215961399 215961631 -2075527 + MER33 DNA MER1_type 1 244 -80 1498 116 0 0 chr3 215961631 215961838 -2075320 + AluSg/x SINE Alu 85 291 -21 284 279 95 13 chr3 215961960 215962118 -2075040 - L1M4 LINE L1 -2680 3466 3296 654 231 0 15 chr3 215962120 215962250 -2074908 - FLAM_A SINE Alu -2 131 4 266 197 0 61 chr3 215962252 215962296 -2074862 - AluJb SINE Alu -121 181 141 2153 101 3 0 chr3 215962296 215962592 -2074566 - AluSg SINE Alu -13 297 1 266 197 0 61 chr3 215962592 215962613 -2074545 - AluJb SINE Alu -161 141 120 2419 53 0 7 chr3 215962669 215962970 -2074188 - AluY SINE Alu -12 299 1 510 190 63 17 chr3 215962972 215963146 -2074012 - L1M4 LINE L1 -2848 3298 3117 797 128 8 0 chr3 215963314 215963431 -2073727 + FLAM_C SINE Alu 14 131 -12 261 318 191 0 chr3 215963483 215963609 -2073549 + MIR SINE MIR 4 153 -109 727 148 25 8 chr3 215963844 215964044 -2073114 + Tigger2 DNA MER2_type 84 2646 -72 913 210 0 6 chr3 215964046 215964227 -2072931 - AluJb SINE Alu -15 297 118 1880 115 43 0 chr3 215964245 215964523 -2072635 - AluSx SINE Alu -22 290 1 310 263 13 0 chr3 215964528 215964604 -2072554 + Tigger2 DNA MER2_type 2642 2718 0 266 177 129 0 chr3 215964627 215964689 -2072469 + MER2 DNA MER2_type 269 338 -7 2127 111 3 0 chr3 215965184 215965482 -2071676 - AluSp SINE Alu -14 299 1 306 0 0 0 chr3 215965726 215965760 -2071398 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1158 118 26 26 chr3 215965780 215965975 -2071183 - AluJo SINE Alu -12 300 106 1457 91 18 5 chr3 215966499 215966719 -2070439 - AluSg/x SINE Alu -5 307 85 196 321 18 0 chr3 215966831 215966887 -2070271 + L3 LINE CR1 1520 1576 -1 1915 144 7 0 chr3 215966902 215967200 -2069958 - AluSx SINE Alu -12 300 1 1203 140 67 0 chr3 215967444 215967637 -2069521 - MER58A DNA MER1_type -3 221 16 740 265 105 0 chr3 215967637 215967837 -2069321 + MIR SINE MIR 21 241 -21 2125 107 3 3 chr3 215968079 215968379 -2068779 - AluSq SINE Alu -13 300 1 3086 193 74 16 chr3 215968933 215968961 -2068197 - L1MB3 LINE L1 -3 6180 6155 2181 103 3 0 chr3 215968961 215969262 -2067896 - AluSx SINE Alu -10 302 1 3086 193 74 16 chr3 215969262 215969549 -2067609 - L1MB3 LINE L1 -28 6155 5886 2169 93 0 10 chr3 215969549 215969859 -2067299 - AluSx SINE Alu -5 307 1 3086 193 74 16 chr3 215969859 215970333 -2066825 - L1MB3 LINE L1 -297 5886 5302 381 159 63 0 chr3 215971743 215971806 -2065352 - MER66A LTR ERV1 -140 338 272 1667 179 0 0 chr3 215971984 215972269 -2064889 - AluJb SINE Alu -23 289 5 1507 159 0 69 chr3 215972274 215972458 -2064700 - AluJo SINE Alu -14 298 144 2133 98 0 3 chr3 215972458 215972755 -2064403 - AluSg SINE Alu -14 296 1 1507 159 0 69 chr3 215972755 215972890 -2064268 - AluJo SINE Alu -168 144 1 697 194 8 0 chr3 215973194 215973318 -2063840 + FLAM_C SINE Alu 7 131 -12 344 326 87 38 chr3 215975261 215975445 -2061713 + MIR SINE MIR 4 196 -66 204 40 0 0 chr3 215975988 215976013 -2061145 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 205 348 124 0 chr3 215976680 215976769 -2060389 - L2 LINE L2 -27 3245 3146 222 267 0 0 chr3 215976784 215976829 -2060329 + MER91B DNA MER1_type 31 75 -115 240 298 149 42 chr3 215977207 215977375 -2059783 + L2 LINE L2 3098 3283 -30 298 337 45 45 chr3 215978390 215978568 -2058590 - L2 LINE L2 -249 3023 2846 204 97 0 0 chr3 215979834 215979865 -2057293 + (TG)n Simple_repeat Simple_repeat 1 31 0 630 306 46 14 chr3 215980540 215980824 -2056334 - HsTC2 DNA Tc2 -1573 325 33 878 233 47 16 chr3 215981155 215981408 -2055750 + AluJo SINE Alu 29 289 -23 386 270 74 25 chr3 215981761 215981924 -2055234 - L1MC/D LINE L1 -2029 5779 5609 360 132 19 0 chr3 215981941 215981994 -2055164 - 5S rRNA rRNA -67 54 1 3686 113 25 12 chr3 215982426 215982994 -2054164 - L1PA16 LINE L1 -9 6157 5583 1830 154 3 7 chr3 215983927 215984213 -2052945 + AluSx SINE Alu 1 285 -27 291 114 0 0 chr3 215984213 215984257 -2052901 + (T)n Simple_repeat Simple_repeat 1 44 0 2073 127 3 10 chr3 215986106 215986406 -2050752 - AluSx SINE Alu -14 298 1 1604 155 4 0 chr3 215986426 215986684 -2050474 - AluSx SINE Alu -7 305 47 22 0 0 0 chr3 215987176 215987198 -2049960 + AT_rich Low_complexity Low_complexity 1 22 0 750 218 0 0 chr3 215988744 215988877 -2048281 - FLAM_A SINE Alu 0 133 1 307 148 0 159 chr3 215988934 215989022 -2048136 - L1MC5 LINE L1 -66 7895 7822 27 0 0 0 chr3 215989044 215989071 -2048087 + AT_rich Low_complexity Low_complexity 1 27 0 780 232 93 48 chr3 215989103 215989585 -2047573 - L1M4 LINE L1 -2773 3373 2870 1931 130 21 0 chr3 215989587 215989753 -2047405 - AluSx SINE Alu -17 295 119 207 0 0 0 chr3 215989753 215989776 -2047382 + (TG)n Simple_repeat Simple_repeat 2 24 0 1931 130 21 0 chr3 215989776 215989893 -2047265 - AluSx SINE Alu -193 119 6 2233 265 35 19 chr3 215989902 215990569 -2046589 - L1MEc LINE L1 -5685 711 35 792 144 0 24 chr3 215990669 215990794 -2046364 + FLAM_C SINE Alu 5 126 -7 2147 109 3 7 chr3 215991410 215991703 -2045455 - AluSx SINE Alu -19 293 2 227 233 67 0 chr3 215991872 215991932 -2045226 - L2 LINE L2 -2 3311 3248 505 209 72 0 chr3 215992004 215992143 -2045015 - Charlie1 DNA MER1_type 0 2761 2613 21 0 0 0 chr3 215992144 215992165 -2044993 + AT_rich Low_complexity Low_complexity 1 21 0 364 154 51 0 chr3 215992181 215992259 -2044899 - Charlie1 DNA MER1_type -218 2543 2462 1968 132 84 0 chr3 215992946 215993256 -2043902 - MER1B DNA MER1_type 0 337 2 492 206 127 18 chr3 215993845 215994010 -2043148 - MER53 DNA DNA -4 185 3 1023 173 63 16 chr3 215994132 215994386 -2042772 + L1MD3 LINE L1 7730 7995 0 206 335 130 19 chr3 215995087 215995248 -2041910 - MIR3 SINE MIR -14 194 16 202 297 127 42 chr3 215996760 215996878 -2040280 - MER5B DNA MER1_type -50 128 1 1847 138 20 14 chr3 215996893 215997190 -2039968 + AluSq SINE Alu 1 299 -14 28 0 0 0 chr3 215997212 215997240 -2039918 + AT_rich Low_complexity Low_complexity 1 28 0 2281 97 0 7 chr3 215997495 215997795 -2039363 + AluSc SINE Alu 1 298 -11 678 219 53 6 chr3 215998711 215998880 -2038278 + MER104 DNA MER2_type 1 177 -3 266 296 191 16 chr3 216000055 216000244 -2036914 + MIR SINE MIR 1 222 -40 2413 44 17 7 chr3 216000741 216001035 -2036123 - AluY SINE Alu -14 297 1 205 283 83 0 chr3 216001375 216001435 -2035723 + MIR SINE MIR 198 262 0 180 0 0 0 chr3 216001970 216001990 -2035168 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 1661 164 0 22 chr3 216001998 216002266 -2034892 - AluJb SINE Alu -44 268 7 1172 175 141 22 chr3 216002282 216002551 -2034607 - AluJb SINE Alu 0 302 2 278 192 55 27 chr3 216002611 216002684 -2034474 - L2 LINE L2 0 3272 3198 215 30 0 30 chr3 216003065 216003098 -2034060 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 1659 153 29 11 chr3 216003101 216003376 -2033782 - AluSx SINE Alu -32 280 1 805 148 8 0 chr3 216003376 216003504 -2033654 - AluSq/x SINE Alu -177 135 7 349 324 28 19 chr3 216003511 216003619 -2033539 - L2 LINE L2 -564 2750 2642 2009 141 10 0 chr3 216005810 216006116 -2031042 - AluSx SINE Alu 0 312 4 423 0 0 0 chr3 216006425 216006472 -2030686 + (TG)n Simple_repeat Simple_repeat 2 48 0 24 32 0 0 chr3 216006773 216006804 -2030354 + AT_rich Low_complexity Low_complexity 1 31 0 2408 68 0 3 chr3 216007139 216007434 -2029724 + AluY SINE Alu 1 294 -17 544 212 15 8 chr3 216007711 216007843 -2029315 + MER3 DNA MER1_type 77 209 0 300 260 0 0 chr3 216007843 216007881 -2029277 - MER3 DNA MER1_type -162 47 10 2885 178 60 24 chr3 216008756 216009336 -2027822 - MER6A DNA MER2_type -3 602 2 473 239 250 35 chr3 216009911 216010367 -2026791 - L1MC5 LINE L1 -49 7912 7359 276 257 143 43 chr3 216010427 216010637 -2026521 - L1MC5 LINE L1 -1807 6001 5771 470 268 100 21 chr3 216011084 216011764 -2025394 - L1ME3A LINE L1 -258 5895 5142 421 252 0 21 chr3 216011907 216012050 -2025108 - L1ME3A LINE L1 -3750 2379 2240 402 78 62 0 chr3 216012479 216012543 -2024615 - MER41B LTR ERV1 -88 547 480 364 320 110 5 chr3 216012548 216012748 -2024410 - HAL1 LINE L1 -890 1617 1397 326 236 29 57 chr3 216012767 216012907 -2024251 - L1ME3A LINE L1 -4873 1246 1111 669 162 0 0 chr3 216013091 216013202 -2023956 - FLAM_C SINE Alu -32 111 1 823 249 63 0 chr3 216013391 216013596 -2023562 + MIR SINE MIR 42 259 -3 776 261 35 55 chr3 216013651 216013961 -2023197 - L1ME3A LINE L1 -5719 400 97 264 273 0 20 chr3 216014645 216014744 -2022414 - HAL1 LINE L1 -1410 1097 1001 216 163 0 0 chr3 216015413 216015456 -2021702 + CT-rich Low_complexity Low_complexity 4 46 0 347 167 42 14 chr3 216015838 216015910 -2021248 - HsTC2 DNA Tc2 -1813 85 12 23 0 0 0 chr3 216016704 216016727 -2020431 + AT_rich Low_complexity Low_complexity 1 23 0 916 118 15 15 chr3 216016728 216016863 -2020295 - AluJo SINE Alu -177 135 1 2147 108 0 0 chr3 216017352 216017640 -2019518 - AluSx SINE Alu -24 288 1 23 0 0 0 chr3 216017644 216017667 -2019491 + AT_rich Low_complexity Low_complexity 1 23 0 364 160 13 40 chr3 216018608 216018683 -2018475 - AluSg/x SINE Alu -11 291 219 1206 164 19 5 chr3 216018683 216018890 -2018268 - AluSx SINE Alu -44 268 59 204 260 20 0 chr3 216018983 216019033 -2018125 - MIR SINE MIR -15 247 197 2286 104 0 0 chr3 216019594 216019891 -2017267 - AluSg SINE Alu -13 297 1 1635 197 3 16 chr3 216020568 216020883 -2016275 - AluJo SINE Alu -1 311 1 244 310 124 18 chr3 216020969 216021082 -2016076 + L2 LINE L2 3125 3249 -23 2847 16 0 0 chr3 216021975 216022288 -2014870 + AluYb8 SINE Alu 1 313 -5 296 251 146 65 chr3 216022321 216022520 -2014638 + L2 LINE L2 3094 3308 -5 21 0 0 0 chr3 216022924 216022945 -2014213 + AT_rich Low_complexity Low_complexity 1 21 0 208 288 0 55 chr3 216023280 216023353 -2013805 - L2 LINE L2 -9 3263 3195 27 73 0 0 chr3 216024638 216024693 -2012465 + AT_rich Low_complexity Low_complexity 1 55 0 233 304 196 18 chr3 216024924 216025036 -2012122 - MIR SINE MIR -56 152 21 861 59 0 0 chr3 216026270 216026371 -2010787 - AluSc SINE Alu -208 101 1 22 80 0 0 chr3 216026397 216026447 -2010711 + AT_rich Low_complexity Low_complexity 1 50 0 712 258 71 12 chr3 216026811 216027063 -2010095 - L1MC4 LINE L1 -84 7958 7692 439 148 49 12 chr3 216027080 216027161 -2009997 - MER20 DNA MER1_type -134 85 2 594 163 78 78 chr3 216027162 216027268 -2009890 + L1MC4a LINE L1 7130 7238 -570 2442 93 0 0 chr3 216027268 216027579 -2009579 - AluSx SINE Alu -1 311 1 594 163 78 78 chr3 216027579 216027638 -2009520 + L1MC4a LINE L1 7237 7295 -513 441 0 0 0 chr3 216027833 216027882 -2009276 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 861 134 0 0 chr3 216027882 216028001 -2009157 - AluJb SINE Alu -193 119 1 1581 97 0 93 chr3 216028534 216028792 -2008366 + AluSx SINE Alu 2 235 -77 251 287 92 23 chr3 216028932 216029019 -2008139 + MIR3 SINE MIR 88 180 -28 25 65 0 0 chr3 216031185 216031231 -2005927 + AT_rich Low_complexity Low_complexity 1 46 0 31 44 0 0 chr3 216031268 216031313 -2005845 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr3 216033551 216033573 -2003585 + AT_rich Low_complexity Low_complexity 1 22 0 2472 73 0 0 chr3 216033945 216034246 -2002912 - AluY SINE Alu -10 301 1 180 0 0 0 chr3 216034348 216034368 -2002790 + (TA)n Simple_repeat Simple_repeat 1 20 0 203 271 0 0 chr3 216034722 216034770 -2002388 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 26 0 0 0 chr3 216035535 216035561 -2001597 + AT_rich Low_complexity Low_complexity 1 26 0 365 194 279 31 chr3 216036252 216036474 -2000684 - L1ME3A LINE L1 -220 5950 5674 650 251 24 24 chr3 216036499 216036666 -2000492 + MER97c DNA MER1_type? 13 179 -911 711 208 138 88 chr3 216036754 216037422 -1999736 - L1ME3A LINE L1 -584 5582 4850 556 127 18 9 chr3 216037422 216037532 -1999626 + CT-rich Low_complexity Low_complexity 1 111 0 1457 166 0 76 chr3 216037537 216037826 -1999332 - AluJb SINE Alu -45 267 1 549 0 0 0 chr3 216038037 216038098 -1999060 + (TG)n Simple_repeat Simple_repeat 2 62 0 1059 164 108 14 chr3 216038098 216038311 -1998847 - AluSq SINE Alu -34 279 47 825 278 107 50 chr3 216038343 216039028 -1998130 - L1ME3A LINE L1 -1495 4651 3899 2256 97 3 3 chr3 216039028 216039318 -1997840 - AluSg SINE Alu -20 290 1 825 278 107 50 chr3 216039318 216039551 -1997607 - L1ME3A LINE L1 -2247 3899 3681 354 204 43 11 chr3 216039611 216039704 -1997454 - L1MC/D LINE L1 -2007 5801 5706 987 57 0 0 chr3 216039714 216039837 -1997321 + AluY SINE Alu 188 310 -1 290 277 102 15 chr3 216039888 216040025 -1997133 - L1MC/D LINE L1 -468 5653 5505 679 316 58 49 chr3 216040152 216040722 -1996436 + L2 LINE L2 1815 2389 -925 1888 167 10 0 chr3 216041021 216041315 -1995843 - AluSx SINE Alu -15 297 1 336 278 163 10 chr3 216041383 216041592 -1995566 + MIR SINE MIR 21 261 -1 324 0 0 0 chr3 216044524 216044560 -1992598 + (CA)n Simple_repeat Simple_repeat 2 37 0 1246 141 0 24 chr3 216044914 216045120 -1992038 - AluJb SINE Alu -18 294 94 925 111 0 15 chr3 216045186 216045321 -1991837 - FLAM_C SINE Alu 0 133 1 502 105 53 0 chr3 216045672 216045748 -1991410 + MER20 DNA MER1_type 3 82 -137 243 0 0 0 chr3 216045780 216045807 -1991351 + (A)n Simple_repeat Simple_repeat 1 27 0 207 325 75 0 chr3 216045838 216045918 -1991240 + MER5A DNA MER1_type 54 139 -50 24 0 0 0 chr3 216046936 216046960 -1990198 + AT_rich Low_complexity Low_complexity 1 24 0 2368 74 3 13 chr3 216047180 216047479 -1989679 + AluSc SINE Alu 1 296 -13 746 133 0 0 chr3 216049201 216049314 -1987844 - AluSq/x SINE Alu -198 114 2 385 261 130 34 chr3 216049587 216049825 -1987333 - L2 LINE L2 -1144 2170 1910 271 283 69 6 chr3 216049924 216050097 -1987061 - L2 LINE L2 -1817 1497 1314 2181 110 7 0 chr3 216050725 216051016 -1986142 - AluSq SINE Alu -20 293 1 486 314 138 34 chr3 216051036 216051833 -1985325 - L2 LINE L2 -779 2535 1656 272 212 61 115 chr3 216052716 216052881 -1984277 + MIR3 SINE MIR 6 161 -47 27 0 0 0 chr3 216053410 216053437 -1983721 + GC_rich Low_complexity Low_complexity 1 27 0 336 210 16 54 chr3 216053503 216053689 -1983469 + (CGG)n Simple_repeat Simple_repeat 2 180 0 243 243 61 81 chr3 216053997 216054145 -1983013 - MIR3 SINE MIR -58 150 6 725 132 0 0 chr3 216054906 216055012 -1982146 - FLAM_C SINE Alu -36 107 2 418 225 54 23 chr3 216059995 216060109 -1977049 - L1M4 LINE L1 -869 5277 5157 6039 45 0 44 chr3 216060109 216060857 -1976301 - SVA Other Other 0 1386 672 418 225 54 23 chr3 216060857 216060871 -1976287 - L1M4 LINE L1 -989 5157 5145 530 249 128 19 chr3 216060923 216061180 -1975978 + L1ME LINE L1 5320 5604 -558 2000 93 4 4 chr3 216061193 216061461 -1975697 + AluSx SINE Alu 1 268 -44 566 268 26 7 chr3 216062312 216062465 -1974693 + MIR SINE MIR 81 236 -26 27 29 0 0 chr3 216064436 216064470 -1972688 + GC_rich Low_complexity Low_complexity 1 34 0 314 284 0 21 chr3 216064779 216064874 -1972284 + CT-rich Low_complexity Low_complexity 4 96 0 1828 121 13 54 chr3 216065249 216065562 -1971596 - AluSx SINE Alu -12 300 1 754 263 24 28 chr3 216066037 216066288 -1970870 + MIR SINE MIR 13 262 0 808 268 138 49 chr3 216066552 216066769 -1970389 - L1M4 LINE L1 -1306 4840 4644 2397 74 0 0 chr3 216066769 216067053 -1970105 + AluSg SINE Alu 15 298 -12 808 268 138 49 chr3 216067053 216067195 -1969963 - L1M4 LINE L1 -1502 4644 4516 2078 65 7 11 chr3 216067195 216067472 -1969686 + L1PA6 LINE L1 5878 6153 -1 808 268 138 49 chr3 216067472 216068279 -1968879 - L1M4 LINE L1 -1630 4516 3520 1538 191 109 0 chr3 216068293 216068613 -1968545 - MLT1F1 LTR MaLR 0 567 213 1948 139 3 16 chr3 216068945 216069248 -1967910 + AluJb SINE Alu 1 299 -13 246 221 0 70 chr3 216069312 216069373 -1967785 + MER116 DNA Mariner 1 56 -24 1867 107 15 4 chr3 216069373 216069636 -1967522 + AluSg SINE Alu 39 304 -6 246 221 0 70 chr3 216069636 216069660 -1967498 + MER116 DNA Mariner 56 80 0 246 250 0 0 chr3 216069925 216069989 -1967169 - HAL1 LINE L1 -374 2133 2070 694 252 226 58 chr3 216070044 216071008 -1966150 - HAL1 LINE L1 -701 1806 681 366 315 31 8 chr3 216071299 216071429 -1965729 - HAL1 LINE L1 -2374 133 1 2258 102 0 0 chr3 216072040 216072343 -1964815 - AluSc SINE Alu -6 303 1 1989 141 16 7 chr3 216072352 216072658 -1964500 - AluSx SINE Alu -3 309 1 1765 172 17 3 chr3 216072659 216072949 -1964209 - AluJb SINE Alu -18 294 1 272 252 185 17 chr3 216072952 216073071 -1964087 - MIR SINE MIR -10 252 114 314 235 43 87 chr3 216074387 216074502 -1962656 + L3 LINE CR1 1361 1470 -107 1344 212 117 11 chr3 216074709 216075086 -1962072 + MLT1D LTR MaLR 4 420 -85 2094 120 0 0 chr3 216075649 216075966 -1961192 + AluSx SINE Alu 1 317 0 824 337 64 32 chr3 216075980 216076416 -1960742 + L3 LINE CR1 1069 1518 -59 488 252 104 0 chr3 216077231 216077366 -1959792 + MIR3 SINE MIR 44 192 -16 180 77 0 0 chr3 216078091 216078117 -1959041 + (A)n Simple_repeat Simple_repeat 1 26 0 225 327 74 6 chr3 216079327 216079489 -1957669 + L2 LINE L2 2050 2222 -1092 1997 135 0 22 chr3 216079845 216080202 -1956956 - AluSx SINE Alu 0 312 1 271 224 15 15 chr3 216080867 216080934 -1956224 + CT-rich Low_complexity Low_complexity 3 69 0 229 290 100 0 chr3 216080969 216081069 -1956089 - MIR3 SINE MIR -11 197 88 2032 134 3 0 chr3 216081830 216082128 -1955030 - AluSx SINE Alu -13 299 1 905 102 11 34 chr3 216082856 216083033 -1954125 + (TCCCC)n Simple_repeat Simple_repeat 5 177 0 328 192 34 14 chr3 216083112 216083222 -1953936 + L1MC1 LINE L1 6031 6117 -216 195 286 114 0 chr3 216083281 216083351 -1953807 + L2 LINE L2 3192 3269 -3 193 311 40 0 chr3 216083471 216083545 -1953613 + L3 LINE CR1 1298 1374 -203 1396 133 18 9 chr3 216083564 216083789 -1953369 + AluSg/x SINE Alu 79 305 -7 450 358 93 16 chr3 216084542 216084855 -1952303 - L1MC4a LINE L1 -1804 6004 5668 756 159 0 65 chr3 216084898 216085036 -1952122 - FLAM_C SINE Alu -2 131 3 2154 79 0 0 chr3 216085942 216086219 -1950939 - AluY SINE Alu -34 277 1 440 291 67 0 chr3 216086428 216086562 -1950596 + MIR SINE MIR 34 176 -86 701 272 44 5 chr3 216086570 216086590 -1950568 + MER20 DNA MER1_type 1 19 -200 282 29 0 0 chr3 216086590 216086625 -1950533 + (TG)n Simple_repeat Simple_repeat 2 36 0 701 272 44 5 chr3 216086625 216086810 -1950348 + MER20 DNA MER1_type 19 214 -5 2271 90 0 22 chr3 216087045 216087357 -1949801 + AluSx SINE Alu 1 305 -7 224 29 0 29 chr3 216088265 216088299 -1948859 + (GAAA)n Simple_repeat Simple_repeat 3 35 0 2376 81 3 0 chr3 216090875 216091185 -1945973 + AluY SINE Alu 1 311 0 440 273 48 48 chr3 216091576 216091741 -1945417 + MIR3 SINE MIR 38 202 -6 375 281 20 34 chr3 216091960 216092106 -1945052 + MER5A DNA MER1_type 3 146 -43 517 216 0 26 chr3 216092118 216092234 -1944924 - MIR SINE MIR 0 262 150 285 273 11 11 chr3 216092538 216092626 -1944532 + MIR3 SINE MIR 109 196 -12 311 251 217 13 chr3 216092850 216093009 -1944149 - MIR3 SINE MIR -10 198 12 219 327 9 45 chr3 216093900 216094010 -1943148 - MIR3 SINE MIR -7 201 96 1057 355 68 42 chr3 216094279 216095203 -1941955 - L3 LINE CR1 -2 1575 628 2301 87 3 0 chr3 216095241 216095540 -1941618 + AluSg SINE Alu 1 300 -10 289 345 17 9 chr3 216096148 216096264 -1940894 - MIR SINE MIR -72 190 74 258 32 0 0 chr3 216096317 216096348 -1940810 + (CA)n Simple_repeat Simple_repeat 2 32 0 303 365 54 47 chr3 216096961 216097257 -1939901 - L2 LINE L2 -58 3214 2917 507 243 7 35 chr3 216100086 216100230 -1936928 - L1ME3A LINE L1 0 6170 6031 249 293 86 29 chr3 216102197 216102337 -1934821 - MIR SINE MIR 0 262 115 2310 102 0 3 chr3 216103380 216103693 -1933465 + AluSx SINE Alu 1 312 0 467 285 76 12 chr3 216103731 216103903 -1933255 - MIR3 SINE MIR -5 203 21 2193 104 0 3 chr3 216104498 216104797 -1932361 - AluSc SINE Alu -11 298 1 311 329 66 36 chr3 216104897 216105034 -1932124 - MIR3 SINE MIR -63 145 5 474 140 28 28 chr3 216105572 216105751 -1931407 + (CA)n Simple_repeat Simple_repeat 1 179 0 357 235 14 5 chr3 216105830 216106273 -1930885 + (CA)n Simple_repeat Simple_repeat 1 447 0 502 195 17 8 chr3 216106294 216106540 -1930618 + (CA)n Simple_repeat Simple_repeat 1 248 0 409 340 7 13 chr3 216106547 216106700 -1930458 - L3 LINE CR1 -102 1475 1324 299 183 28 0 chr3 216107501 216107572 -1929586 - MER94 DNA DNA -1 133 61 36 40 0 0 chr3 216107590 216107640 -1929518 + AT_rich Low_complexity Low_complexity 1 50 0 773 158 8 8 chr3 216107640 216107767 -1929391 - FLAM_A SINE Alu -6 127 1 530 292 23 65 chr3 216107858 216108074 -1929084 - MIR SINE MIR -8 254 48 256 309 49 45 chr3 216108168 216108374 -1928784 - L2 LINE L2 -1 3271 3062 2525 56 0 0 chr3 216108374 216108679 -1928479 + AluSq SINE Alu 1 305 -8 256 309 49 45 chr3 216108679 216108715 -1928443 - L2 LINE L2 -210 3062 3028 605 268 26 7 chr3 216109201 216109354 -1927804 - MIR SINE MIR -26 236 81 315 0 0 0 chr3 216109986 216110021 -1927137 + (T)n Simple_repeat Simple_repeat 1 35 0 968 202 5 5 chr3 216110198 216110391 -1926767 - AluSg/x SINE Alu -44 266 74 218 254 75 30 chr3 216110603 216110670 -1926488 + MER5B DNA MER1_type 10 79 -99 1171 144 0 5 chr3 216110670 216110865 -1926293 + MER41D LTR ERV1 1 194 -363 2330 92 0 10 chr3 216111110 216111424 -1925734 - AluSq SINE Alu -2 311 1 2233 82 3 0 chr3 216112368 216112659 -1924499 + AluSc SINE Alu 1 292 -17 847 173 0 0 chr3 216113086 216113219 -1923939 - FLAM_A SINE Alu 0 133 1 184 304 0 0 chr3 216113454 216113500 -1923658 + L2 LINE L2 3224 3269 -3 2221 100 6 31 chr3 216113841 216114161 -1922997 - AluSq SINE Alu 0 313 2 305 222 0 0 chr3 216114191 216114252 -1922906 + MIR SINE MIR 90 150 -58 239 246 0 183 chr3 216114252 216114378 -1922780 - MER5B DNA MER1_type -3 175 73 1765 199 22 11 chr3 216114384 216114746 -1922412 - MER41D LTR ERV1 0 557 192 5559 69 21 22 chr3 216114746 216115512 -1921646 - MER4E LTR ERV1 0 766 2 552 273 126 21 chr3 216118431 216118669 -1918489 + Charlie8 DNA MER1_type 1 263 -2154 749 293 0 22 chr3 216118702 216118931 -1918227 + MIR SINE MIR 39 262 0 2111 112 3 13 chr3 216119491 216119804 -1917354 + AluSg SINE Alu 1 310 0 1020 196 11 0 chr3 216120398 216120582 -1916576 - AluJo SINE Alu -6 306 121 531 223 134 0 chr3 216121347 216121504 -1915654 - MER115 DNA AcHobo -503 190 13 781 324 5 0 chr3 216121624 216121843 -1915315 + MIR SINE MIR 36 255 -7 303 199 0 35 chr3 216122722 216122893 -1914265 + (CAGCC)n Simple_repeat Simple_repeat 3 167 0 182 210 0 34 chr3 216122904 216123023 -1914135 + (CAGCC)n Simple_repeat Simple_repeat 3 117 0 258 269 13 0 chr3 216123192 216123270 -1913888 + L1MC/D LINE L1 5719 5797 -2011 1657 187 10 7 chr3 216123302 216123607 -1913551 + AluJb SINE Alu 1 306 -6 2323 78 0 0 chr3 216123772 216124067 -1913091 + AluSq SINE Alu 1 295 -18 191 259 19 0 chr3 216124207 216124261 -1912897 + MIR SINE MIR 189 243 -19 38 22 0 0 chr3 216324379 216324424 -1712734 + AT_rich Low_complexity Low_complexity 1 45 0 550 233 0 17 chr3 216325204 216325376 -1711782 + CT-rich Low_complexity Low_complexity 3 171 0 2242 99 0 7 chr3 216325503 216325795 -1711363 + AluSx SINE Alu 1 290 -22 586 108 0 0 chr3 216325973 216326056 -1711102 + AluSg/x SINE Alu 212 294 -16 303 225 130 14 chr3 216326093 216326225 -1710933 - MIR SINE MIR -37 171 26 249 297 40 0 chr3 216326511 216326585 -1710573 - L2 LINE L2 -1 3271 3195 2379 80 0 3 chr3 216327465 216327765 -1709393 - AluSq SINE Alu -14 299 1 232 258 0 0 chr3 216327766 216327832 -1709326 + T-rich Low_complexity Low_complexity 1 66 0 471 227 113 7 chr3 216327850 216327991 -1709167 - FAM SINE Alu -14 171 16 1204 116 6 0 chr3 216328022 216328186 -1708972 + AluSg SINE Alu 1 165 -145 225 288 36 79 chr3 216328439 216328578 -1708580 + MIR SINE MIR 8 140 -122 318 277 59 0 chr3 216329221 216329340 -1707818 + MIR SINE MIR 137 262 0 183 260 0 20 chr3 216329859 216329909 -1707249 + MIR SINE MIR 92 140 -122 2058 141 0 19 chr3 216330285 216330598 -1706560 - AluSx SINE Alu -5 307 1 523 235 19 37 chr3 216330825 216330987 -1706171 - L2 LINE L2 0 3313 3155 213 244 39 13 chr3 216331995 216332073 -1705085 + MIR SINE MIR 113 192 -70 2218 119 0 10 chr3 216334015 216334326 -1702832 + AluSg SINE Alu 1 308 -2 351 329 56 6 chr3 216335472 216335633 -1701525 - MIR SINE MIR -90 172 4 260 294 94 47 chr3 216335824 216335994 -1701164 - MIR SINE MIR -83 179 2 2290 29 103 4 chr3 216336350 216336631 -1700527 - AluY SINE Alu -2 309 1 240 160 100 0 chr3 216336684 216336734 -1700424 - MIR3 SINE MIR -22 186 132 736 189 47 37 chr3 216339558 216339749 -1697409 + L1MD3 LINE L1 7784 7976 -19 329 127 16 16 chr3 216340041 216340084 -1697074 + AluS SINE Alu 2 44 -259 351 92 15 15 chr3 216340084 216340128 -1697030 + Alu SINE Alu 1 44 -256 285 68 0 0 chr3 216340128 216340172 -1696986 + Alu SINE Alu 1 44 -256 2230 110 0 7 chr3 216340172 216340471 -1696687 + AluSx SINE Alu 1 297 -15 407 222 213 0 chr3 216340483 216340591 -1696567 + MER5A DNA MER1_type 56 186 -3 1508 190 47 0 chr3 216344774 216345053 -1692105 - AluJb SINE Alu -20 292 1 602 216 39 59 chr3 216345134 216345207 -1691951 - MER58B DNA MER1_type -2081 339 266 2264 85 3 26 chr3 216345207 216345512 -1691646 + AluSp SINE Alu 2 299 -14 602 216 39 59 chr3 216345512 216345591 -1691567 - MER58B DNA MER1_type -2154 266 190 1592 152 40 18 chr3 216345702 216345979 -1691179 - AluJb SINE Alu -2 310 28 374 203 173 94 chr3 216346032 216346132 -1691026 - HAL1 LINE L1 -1383 1124 1033 1641 138 39 11 chr3 216346132 216346392 -1690766 - AluJb SINE Alu -45 267 1 374 203 173 94 chr3 216346392 216346493 -1690665 - HAL1 LINE L1 -1474 1033 907 217 0 0 57 chr3 216346497 216346532 -1690626 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 462 196 65 9 chr3 216346533 216346640 -1690518 - AluSg SINE Alu -196 114 2 195 42 0 0 chr3 216346649 216346673 -1690485 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1708 142 19 15 chr3 216346708 216346975 -1690183 - AluJo SINE Alu -44 268 1 827 275 100 99 chr3 216346976 216347815 -1689343 - HAL1 LINE L1 -1613 894 52 2261 120 0 3 chr3 216347815 216348123 -1689035 + AluSx SINE Alu 1 307 -5 827 275 100 99 chr3 216348123 216348152 -1689006 - HAL1 LINE L1 -2455 52 25 418 235 142 6 chr3 216348159 216348342 -1688816 + L1ME4a LINE L1 5841 6048 -73 2928 65 0 5 chr3 216348347 216348718 -1688440 - L1PA6 LINE L1 -4 6150 5782 2343 107 3 0 chr3 216348939 216349247 -1687911 + AluSx SINE Alu 1 309 -3 197 151 19 0 chr3 216349301 216349354 -1687804 + T-rich Low_complexity Low_complexity 2 55 0 334 214 31 20 chr3 216349416 216349514 -1687644 + MIR SINE MIR 1 99 -163 362 243 10 29 chr3 216349514 216349617 -1687541 - LTR16B LTR ERVL 0 464 364 571 323 21 13 chr3 216349681 216349916 -1687242 - LTR16B LTR ERVL -227 237 1 526 259 47 0 chr3 216350157 216350327 -1686831 + MER5A DNA MER1_type 12 189 0 2304 95 17 0 chr3 216350581 216350876 -1686282 + AluSx SINE Alu 1 300 -12 227 225 0 112 chr3 216351004 216351191 -1685967 + (CACCC)n Simple_repeat Simple_repeat 3 168 0 230 0 33 0 chr3 216351506 216351536 -1685622 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2267 107 0 7 chr3 216352220 216352528 -1684630 + AluSx SINE Alu 1 306 -6 196 426 28 9 chr3 216352616 216352724 -1684434 + L3 LINE CR1 37 146 -1431 24 53 0 0 chr3 216352886 216352924 -1684234 + AT_rich Low_complexity Low_complexity 1 38 0 742 207 43 12 chr3 216353089 216353253 -1683905 + MER105 DNA DNA 34 202 -2 1326 89 0 6 chr3 216353376 216353545 -1683613 + AluSq SINE Alu 133 300 -13 1909 117 55 15 chr3 216353580 216353905 -1683253 + L1MA3 LINE L1 5968 6305 0 593 240 41 0 chr3 216353947 216354093 -1683065 - FRAM SINE Alu -14 152 1 238 158 36 2 chr3 216354223 216354445 -1682713 + AluJo SINE Alu 1 284 -18 210 268 121 51 chr3 216354779 216354936 -1682222 + L3b LINE CR1 1302 1469 -114 682 249 93 5 chr3 216355025 216355230 -1681928 - MER58A DNA MER1_type 0 224 2 21 0 0 0 chr3 216356088 216356109 -1681049 + AT_rich Low_complexity Low_complexity 1 21 0 394 203 19 108 chr3 216357673 216357831 -1679327 - L2 LINE L2 -5 3308 3165 1281 133 5 5 chr3 216357831 216358019 -1679139 + AluJo SINE Alu 1 188 -124 269 254 30 0 chr3 216358167 216358234 -1678924 + MIR SINE MIR 73 141 -121 198 234 0 0 chr3 216358248 216358295 -1678863 + L2 LINE L2 3263 3309 -4 2396 84 3 16 chr3 216358375 216358686 -1678472 - AluSx SINE Alu -5 307 1 1542 122 69 92 chr3 216358750 216359053 -1678105 - AluJb SINE Alu -14 298 3 2191 123 3 0 chr3 216359458 216359759 -1677399 - AluSq SINE Alu -11 302 1 2132 103 0 31 chr3 216360569 216360888 -1676270 + AluSx SINE Alu 1 310 0 499 143 0 128 chr3 216360963 216361096 -1676062 + FLAM_A SINE Alu 18 133 -9 1008 167 0 0 chr3 216361096 216361252 -1675906 + AluSx SINE Alu 1 156 -156 301 280 64 24 chr3 216361276 216361401 -1675757 - L1M4 LINE L1 -1715 4431 4302 2255 108 0 0 chr3 216363075 216363362 -1673796 + AluSx SINE Alu 1 287 -25 297 0 0 0 chr3 216363365 216363398 -1673760 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1211 176 8 97 chr3 216363781 216364048 -1673110 - AluJo SINE Alu -21 291 49 1748 181 3 13 chr3 216364098 216364413 -1672745 + AluSx SINE Alu 1 312 0 1496 199 31 3 chr3 216364436 216364723 -1672435 + AluJo SINE Alu 1 295 -17 2137 106 0 59 chr3 216364725 216365045 -1672113 + AluSx SINE Alu 1 301 -11 2480 74 0 0 chr3 216365172 216365469 -1671689 - AluSc SINE Alu -12 297 1 2731 120 8 27 chr3 216365928 216366329 -1670829 - MER1A DNA MER1_type -136 393 1 2271 116 0 0 chr3 216366425 216366726 -1670432 - AluSc SINE Alu -8 301 1 1221 157 102 17 chr3 216366727 216366963 -1670195 - AluJo SINE Alu -15 297 42 297 243 178 0 chr3 216366968 216367075 -1670083 - LTR16A1 LTR ERVL -160 297 172 328 295 82 16 chr3 216367120 216367303 -1669855 + L1MC4 LINE L1 7848 8042 0 2183 116 7 7 chr3 216367582 216367892 -1669266 - AluSx SINE Alu -2 310 1 643 195 81 0 chr3 216367894 216368017 -1669141 - FLAM_A SINE Alu 0 133 1 2138 138 3 0 chr3 216368086 216368390 -1668768 - AluJo SINE Alu -7 305 1 507 335 45 78 chr3 216368511 216368973 -1668185 + L2 LINE L2 2818 3264 -8 251 81 0 0 chr3 216369746 216369783 -1667375 + Alu SINE Alu 2 38 -261 2106 130 0 0 chr3 216369800 216370101 -1667057 + AluSx SINE Alu 1 301 -11 1688 235 123 14 chr3 216371484 216371981 -1665177 - L1ME3A LINE L1 -8 6162 5612 1042 218 78 51 chr3 216371983 216372318 -1664840 + MER2 DNA MER2_type 1 344 0 1774 166 10 3 chr3 216372426 216372584 -1664574 - AluJb SINE Alu -14 298 136 2525 74 0 7 chr3 216372584 216372894 -1664264 - AluY SINE Alu -3 308 1 1774 166 10 3 chr3 216372894 216373031 -1664127 - AluJb SINE Alu -176 136 1 1930 121 10 64 chr3 216373033 216373210 -1663948 - AluSx SINE Alu -16 296 142 1901 122 0 8 chr3 216373210 216373473 -1663685 - AluSq SINE Alu -52 261 1 1930 121 10 64 chr3 216373473 216373608 -1663550 - AluSx SINE Alu -170 142 1 243 0 0 0 chr3 216373613 216373640 -1663518 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 756 196 7 28 chr3 216373643 216373786 -1663372 - FRAM SINE Alu -30 146 7 35 33 0 17 chr3 216374697 216374715 -1662443 + AT_rich Low_complexity Low_complexity 1 18 -41 734 162 0 0 chr3 216374715 216374832 -1662326 + FLAM_C SINE Alu 2 118 -15 35 33 0 17 chr3 216374832 216374873 -1662285 + AT_rich Low_complexity Low_complexity 18 59 0 1486 167 62 4 chr3 216375092 216375350 -1661808 + AluJo SINE Alu 1 273 -39 195 42 0 0 chr3 216375350 216375374 -1661784 + (TC)n Simple_repeat Simple_repeat 2 25 0 1527 177 87 4 chr3 216375374 216375640 -1661518 - AluJo SINE Alu -24 288 1 219 139 0 0 chr3 216375653 216375689 -1661469 + (A)n Simple_repeat Simple_repeat 1 36 0 2511 83 0 6 chr3 216375741 216376054 -1661104 - AluSp SINE Alu -2 311 1 2370 96 3 3 chr3 216376054 216376356 -1660802 - AluSp SINE Alu -11 302 1 25 31 0 0 chr3 216376532 216376564 -1660594 + AT_rich Low_complexity Low_complexity 1 32 0 1087 90 0 0 chr3 216376821 216376954 -1660204 + AluSc SINE Alu 1 133 -176 218 200 250 0 chr3 216377054 216377134 -1660024 - L2 LINE L2 -767 2547 2448 212 307 143 52 chr3 216377360 216377591 -1659567 - L2 LINE L2 -2 3270 3019 2299 105 7 0 chr3 216377660 216377964 -1659194 + AluSx SINE Alu 1 306 -6 528 291 114 0 chr3 216378014 216378189 -1658969 - LTR33 LTR ERVL -186 335 141 662 260 60 40 chr3 216378246 216378593 -1658565 - L2 LINE L2 -232 3040 2688 24 0 0 0 chr3 216378639 216378663 -1658495 + AT_rich Low_complexity Low_complexity 1 24 0 2156 108 41 0 chr3 216378784 216379079 -1658079 + AluSq SINE Alu 3 309 -4 2683 29 0 13 chr3 216379431 216379739 -1657419 - AluY SINE Alu -7 304 1 2642 207 23 8 chr3 216380347 216380873 -1656285 - MLT1F LTR MaLR -8 534 1 2328 89 0 32 chr3 216381012 216381145 -1656013 + AluSp SINE Alu 1 137 -176 2424 64 0 0 chr3 216381145 216381459 -1655699 + AluY SINE Alu 1 314 0 2328 89 0 32 chr3 216381459 216381638 -1655520 + AluSp SINE Alu 137 304 -9 1373 145 13 18 chr3 216382229 216382456 -1654702 - AluJb SINE Alu -3 309 84 2146 54 91 0 chr3 216382981 216383257 -1653901 - AluSp SINE Alu -12 301 1 1217 27 0 14 chr3 216383477 216383623 -1653535 - AluY SINE Alu 0 311 168 311 242 170 33 chr3 216383681 216383834 -1653324 + MIR3 SINE MIR 28 201 -7 1450 187 8 8 chr3 216384067 216384329 -1652829 + AluJo SINE Alu 37 298 -14 570 186 17 29 chr3 216384333 216384620 -1652538 + GA-rich Low_complexity Low_complexity 1 283 0 1555 165 0 4 chr3 216384722 216384971 -1652187 - AluJo SINE Alu -62 250 3 1479 74 78 18 chr3 216384995 216385212 -1651946 - MER30 DNA MER1_type 0 230 1 635 223 8 0 chr3 216385292 216385422 -1651736 + FRAM SINE Alu 29 159 -17 1711 180 0 0 chr3 216385433 216385700 -1651458 + AluJb SINE Alu 9 275 -37 237 33 0 0 chr3 216385704 216385734 -1651424 + (CAA)n Simple_repeat Simple_repeat 1 30 0 1680 153 57 11 chr3 216385734 216386015 -1651143 + AluJo SINE Alu 1 294 -18 2184 121 3 10 chr3 216386078 216386385 -1650773 + AluSp SINE Alu 1 305 -8 296 309 94 45 chr3 216386469 216386757 -1650401 + L2 LINE L2 2656 2957 -357 2357 90 3 3 chr3 216386815 216387126 -1650032 - AluSx SINE Alu -1 311 1 320 248 165 9 chr3 216387331 216387440 -1649718 + L2 LINE L2 3141 3266 -6 396 59 0 0 chr3 216388638 216388689 -1648469 + (CACG)n Simple_repeat Simple_repeat 4 54 0 366 92 76 160 chr3 216388700 216388819 -1648339 + FLAM_A SINE Alu 25 133 0 2189 116 7 3 chr3 216389668 216389969 -1647189 + AluSx SINE Alu 1 302 -10 37 39 0 0 chr3 216389972 216390023 -1647135 + AT_rich Low_complexity Low_complexity 1 51 0 2378 78 3 0 chr3 216390068 216390362 -1646796 + AluSx SINE Alu 1 295 -17 236 237 65 11 chr3 216390485 216390578 -1646580 - L1M4 LINE L1 -374 5804 5707 2167 101 28 0 chr3 216391000 216391310 -1645848 - AluSx SINE Alu 0 312 1 1162 135 0 0 chr3 216391686 216391856 -1645302 - FRAM SINE Alu -8 168 1 2269 93 13 0 chr3 216391997 216392297 -1644861 - AluSx SINE Alu -8 304 1 317 289 40 35 chr3 216392577 216392778 -1644380 - L1M4 LINE L1 -1868 4278 4077 335 274 28 28 chr3 216392839 216392945 -1644213 + ERVL LTR ERVL 514 619 -5035 1659 309 50 49 chr3 216393978 216395146 -1642012 + ERVL LTR ERVL 841 2079 -3614 319 266 89 0 chr3 216395239 216395363 -1641795 - L1M4 LINE L1 -2228 3918 3784 722 157 75 14 chr3 216395482 216395629 -1641529 - LTR41 LTR ERVL -617 156 1 622 254 37 67 chr3 216395643 216395915 -1641243 - L1M4 LINE L1 -2096 4050 3786 2009 101 49 14 chr3 216395915 216396203 -1640955 - AluSp SINE Alu -15 298 1 622 254 37 67 chr3 216396203 216396229 -1640929 - L1M4 LINE L1 -2360 3786 3761 5921 115 26 42 chr3 216396284 216396823 -1640335 - L1MA3 LINE L1 0 6305 5788 1894 96 88 0 chr3 216396823 216397084 -1640074 - AluSx SINE Alu -28 284 1 5921 115 26 42 chr3 216397084 216397545 -1639613 - L1MA3 LINE L1 -517 5788 5321 365 247 0 21 chr3 216397557 216397650 -1639508 + L1MC4 LINE L1 6613 6703 -1339 309 109 0 0 chr3 216397650 216397696 -1639462 + (TATG)n Simple_repeat Simple_repeat 2 47 0 670 172 9 9 chr3 216397719 216397835 -1639323 - FLAM_C SINE Alu -26 117 2 4378 144 20 42 chr3 216397835 216398018 -1639140 - L1 LINE L1 -814 6751 6566 1917 135 39 0 chr3 216398018 216398299 -1638859 - AluSx SINE Alu -20 292 1 4378 144 20 42 chr3 216398299 216398994 -1638164 - L1 LINE L1 -999 6566 5892 * 10593 168 49 29 chr3 216398964 216400226 -1636932 - L1 LINE L1 -5097 2468 1435 2099 121 3 0 chr3 216400226 216400515 -1636643 + AluSx SINE Alu 1 290 -22 10593 168 49 29 chr3 216400515 216401961 -1635197 - L1 LINE L1 -6130 1435 20 672 184 8 16 chr3 216402097 216402222 -1634936 - FLAM_A SINE Alu -9 124 1 657 283 76 75 chr3 216402444 216402804 -1634354 - L1M4 LINE L1 -2579 3567 3209 2085 99 136 6 chr3 216402804 216403136 -1634022 + THE1C LTR MaLR 1 375 0 657 283 76 75 chr3 216403136 216403583 -1633575 - L1M4 LINE L1 -2937 3209 2756 2418 61 3 35 chr3 216403583 216403893 -1633265 + AluY SINE Alu 1 300 -11 657 283 76 75 chr3 216403893 216404191 -1632967 - L1M4 LINE L1 -3390 2756 2460 236 297 12 39 chr3 216404398 216404657 -1632501 - L1M4 LINE L1 -2689 3457 3206 408 114 86 29 chr3 216404664 216404734 -1632424 + THE1C LTR MaLR 1 74 -301 1335 188 70 13 chr3 216404811 216405120 -1632038 + MLT1A1 LTR MaLR 6 365 0 260 189 66 38 chr3 216405236 216405310 -1631848 + MER113 DNA MER1_type? 6 85 -436 2273 89 10 3 chr3 216405310 216405603 -1631555 - AluSp SINE Alu -18 295 1 260 189 66 38 chr3 216405603 216405634 -1631524 + MER113 DNA MER1_type? 85 114 -407 641 122 10 0 chr3 216405670 216405768 -1631390 - FRAM SINE Alu -11 165 67 1704 174 20 7 chr3 216405879 216406178 -1630980 + AluJo SINE Alu 1 303 -9 236 267 163 0 chr3 216406183 216406269 -1630889 + MER113 DNA MER1_type? 204 303 -218 1623 147 42 25 chr3 216406375 216406661 -1630497 - AluJo SINE Alu -19 293 3 759 133 0 0 chr3 216406833 216406938 -1630220 - U6 snRNA snRNA -2 105 1 218 170 38 0 chr3 216407090 216407143 -1630015 + (TA)n Simple_repeat Simple_repeat 2 56 0 185 175 0 0 chr3 216407170 216407210 -1629948 - MIR SINE MIR -71 191 152 2161 113 0 16 chr3 216407573 216407883 -1629275 - AluY SINE Alu -6 305 1 2524 72 3 0 chr3 216408064 216408369 -1628789 - AluSp SINE Alu -7 306 1 964 191 30 61 chr3 216408389 216408651 -1628507 - L1ME3 LINE L1 -22 6140 5887 2065 140 0 13 chr3 216409256 216409564 -1627594 + AluSx SINE Alu 2 305 -7 21 89 0 0 chr3 216409643 216409699 -1627459 + AT_rich Low_complexity Low_complexity 1 56 0 1980 132 3 35 chr3 216410848 216411158 -1626000 - AluJb SINE Alu -11 301 2 711 78 0 0 chr3 216414446 216414536 -1622622 - AluSg/x SINE Alu -9 303 214 1026 168 71 72 chr3 216415285 216415518 -1621640 - MER33 DNA MER1_type -2283 302 65 2092 106 0 67 chr3 216415518 216415830 -1621328 - AluSx SINE Alu -21 291 1 1026 168 71 72 chr3 216415830 216415907 -1621251 - MER33 DNA MER1_type -2520 65 1 404 203 0 0 chr3 216416910 216416984 -1620174 + AluJ/FLAM SINE Alu 5 78 -234 936 195 6 0 chr3 216416984 216417148 -1620010 + AluJo/FRAM SINE Alu 131 295 -17 1317 164 126 30 chr3 216417151 216417420 -1619738 + AluJo SINE Alu 1 295 -17 23 33 0 0 chr3 216417433 216417463 -1619695 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr3 216417675 216417704 -1619454 + AT_rich Low_complexity Low_complexity 1 29 0 289 164 70 70 chr3 216418412 216418540 -1618618 - L1MC5 LINE L1 -20 7941 7814 589 161 0 0 chr3 216418721 216418814 -1618344 + FLAM_A SINE Alu 35 127 -15 227 362 60 20 chr3 216418878 216419027 -1618131 - MIR3 SINE MIR -8 200 46 835 148 213 22 chr3 216419035 216419218 -1617940 + MER20 DNA MER1_type 1 218 -1 25 31 0 0 chr3 216419627 216419659 -1617499 + AT_rich Low_complexity Low_complexity 1 32 0 2416 89 0 3 chr3 216420060 216420364 -1616794 + AluSq SINE Alu 2 304 -9 2492 76 0 0 chr3 216420423 216420726 -1616432 + AluY SINE Alu 1 303 -8 2349 94 0 3 chr3 216420975 216421272 -1615886 - AluSc SINE Alu -13 296 1 29 90 0 0 chr3 216421313 216421391 -1615767 + AT_rich Low_complexity Low_complexity 1 78 0 2316 113 0 0 chr3 216421848 216422149 -1615009 - AluSx SINE Alu -11 301 1 27 49 0 0 chr3 216422150 216422191 -1614967 + AT_rich Low_complexity Low_complexity 1 41 0 398 305 34 0 chr3 216422590 216422708 -1614450 + L2 LINE L2 3187 3308 -5 1400 193 7 25 chr3 216422814 216423099 -1614059 + AluJb SINE Alu 1 280 -32 387 0 0 0 chr3 216423099 216423142 -1614016 + (CAAAA)n Simple_repeat Simple_repeat 5 47 0 543 304 35 70 chr3 216423153 216423327 -1613831 + L1MEd LINE L1 5 184 -5935 2096 219 105 42 chr3 216423327 216423916 -1613242 + MLT1E2 LTR MaLR 1 626 0 543 304 35 70 chr3 216423916 216424142 -1613016 + L1MEd LINE L1 184 391 -5728 2066 109 0 59 chr3 216424476 216424796 -1612362 - AluSx SINE Alu -11 301 1 1645 181 26 0 chr3 216424950 216425254 -1611904 - AluJb SINE Alu 0 312 1 388 292 66 15 chr3 216425916 216426053 -1611105 - L3 LINE CR1 -4 1573 1430 662 233 0 0 chr3 216426684 216426813 -1610345 - FLAM_A SINE Alu -4 129 1 1908 143 0 42 chr3 216426879 216427187 -1609971 - AluSx SINE Alu -17 295 1 23 0 0 0 chr3 216427332 216427355 -1609803 + AT_rich Low_complexity Low_complexity 1 23 0 2308 105 0 0 chr3 216427974 216428278 -1608880 + AluSq SINE Alu 1 304 -9 2495 73 0 0 chr3 216428337 216428640 -1608518 + AluY SINE Alu 1 303 -8 2359 88 0 3 chr3 216428889 216429185 -1607973 - AluSc SINE Alu -14 295 1 29 90 0 0 chr3 216429226 216429304 -1607854 + AT_rich Low_complexity Low_complexity 1 78 0 2832 276 113 49 chr3 216430328 216431198 -1605960 + HAL1 LINE L1 261 1074 -1433 2578 64 0 3 chr3 216431198 216431510 -1605648 + AluY SINE Alu 1 311 0 2832 276 113 49 chr3 216431510 216432107 -1605051 + HAL1 LINE L1 1074 1631 -876 2264 81 7 20 chr3 216432107 216432403 -1604755 + AluSg1 SINE Alu 1 292 -17 2832 276 113 49 chr3 216432403 216432616 -1604542 + HAL1 LINE L1 1631 1829 -678 2525 67 0 0 chr3 216432616 216432915 -1604243 + AluSg SINE Alu 1 299 -11 2832 276 113 49 chr3 216432915 216433189 -1603969 + HAL1 LINE L1 1829 2342 -165 1709 147 28 11 chr3 216433197 216433483 -1603675 + AluJo SINE Alu 3 293 -19 2336 93 0 7 chr3 216433580 216433712 -1603446 + AluY SINE Alu 1 132 -179 1872 93 110 41 chr3 216433712 216434002 -1603156 + AluSg SINE Alu 1 310 0 2336 93 0 7 chr3 216434002 216434170 -1602988 + AluY SINE Alu 132 299 -12 22 0 0 0 chr3 216434174 216434196 -1602962 + AT_rich Low_complexity Low_complexity 1 22 0 1780 173 3 3 chr3 216435004 216435299 -1601859 + AluJb SINE Alu 1 295 -17 317 231 82 67 chr3 216435386 216435520 -1601638 + L1MC5 LINE L1 7726 7861 -100 290 291 103 30 chr3 216435703 216435868 -1601290 - L3 LINE CR1 -41 1536 1360 282 115 0 0 chr3 216436088 216436140 -1601018 + (CA)n Simple_repeat Simple_repeat 2 53 0 1584 182 11 0 chr3 216436163 216436449 -1600709 - AluJo SINE Alu -23 289 1 789 159 0 86 chr3 216436969 216437120 -1600038 + FLAM_C SINE Alu 2 139 -4 2363 106 0 0 chr3 216437242 216437544 -1599614 - AluSq SINE Alu -11 302 1 2406 97 0 0 chr3 216437825 216438134 -1599024 - AluSx SINE Alu -3 309 1 443 301 81 0 chr3 216438628 216438764 -1598394 + MIR SINE MIR 46 192 -70 2313 78 0 3 chr3 216438857 216439165 -1597993 + AluY SINE Alu 1 307 0 246 32 0 0 chr3 216439616 216439647 -1597511 + (CA)n Simple_repeat Simple_repeat 2 32 0 220 372 0 68 chr3 216439917 216440065 -1597093 + MIR SINE MIR 40 177 -85 2259 106 3 0 chr3 216440398 216440700 -1596458 + AluSp SINE Alu 1 303 -10 377 230 79 40 chr3 216440817 216440943 -1596215 + L1ME LINE L1 5610 5740 -381 1534 162 175 10 chr3 216441427 216441735 -1595423 + MER47A DNA MER2_type 8 366 0 1374 187 79 116 chr3 216442347 216442539 -1594619 + L1MC5 LINE L1 6830 7028 -933 2466 116 8 8 chr3 216442539 216442894 -1594264 + THE1A LTR MaLR 1 355 0 1374 187 79 116 chr3 216442894 216443147 -1594011 + L1MC5 LINE L1 7028 7254 -707 2310 93 7 0 chr3 216443147 216443457 -1593701 + AluSx SINE Alu 1 312 0 1374 187 79 116 chr3 216443457 216443590 -1593568 + L1MC5 LINE L1 7254 7390 -571 1341 143 19 0 chr3 216443671 216443880 -1593278 + L1MA3 LINE L1 6093 6305 0 3087 180 76 40 chr3 216443881 216444107 -1593051 + L1MB3 LINE L1 5434 5650 -533 1816 122 0 138 chr3 216444107 216444469 -1592689 + AluJo SINE Alu 1 312 0 3087 180 76 40 chr3 216444469 216444965 -1592193 + L1MB3 LINE L1 5650 6182 -1 27 29 0 0 chr3 216445725 216445759 -1591399 + AT_rich Low_complexity Low_complexity 1 34 0 305 188 0 0 chr3 216446190 216446238 -1590920 + L1MDa LINE L1 18 65 -6475 1210 175 186 75 chr3 216446358 216446524 -1590634 + L1MDa LINE L1 75 221 -6319 1967 127 38 0 chr3 216446524 216446816 -1590342 + AluSq SINE Alu 1 303 -10 1210 175 186 75 chr3 216446816 216447009 -1590149 + L1MDa LINE L1 221 474 -6066 * 5766 157 106 57 chr3 216446995 216447667 -1589491 + L1MDa LINE L1 1021 1659 -4881 1954 157 0 0 chr3 216447667 216447961 -1589197 - AluJb SINE Alu -18 294 1 5766 157 106 57 chr3 216447961 216448066 -1589092 + L1MDa LINE L1 1659 1757 -4783 1791 149 46 3 chr3 216448066 216448348 -1588810 - AluJb SINE Alu -18 294 1 5766 157 106 57 chr3 216448348 216448575 -1588583 + L1MDa LINE L1 1757 1972 -4568 2055 180 40 11 chr3 216448575 216448953 -1588205 - MLT1B LTR MaLR -1 389 1 5766 157 106 57 chr3 216448953 216449457 -1587701 + L1MDa LINE L1 1972 2615 -3925 2372 66 0 17 chr3 216449457 216449759 -1587399 + AluY SINE Alu 1 297 -14 5766 157 106 57 chr3 216449759 216449822 -1587336 + L1MDa LINE L1 2615 2674 -3866 279 139 0 0 chr3 216450899 216450942 -1586216 - AluJb SINE Alu -66 236 194 762 134 0 63 chr3 216450971 216451113 -1586045 - FLAM_C SINE Alu 0 133 1 1393 196 52 14 chr3 216451114 216451405 -1585753 - AluJb SINE Alu 0 302 1 2214 96 4 0 chr3 216451603 216451903 -1585255 - AluSx SINE Alu 0 301 1 1618 157 31 24 chr3 216452091 216452378 -1584780 - AluJb SINE Alu -2 310 22 577 262 42 96 chr3 216452395 216452603 -1584555 + L2 LINE L2 1760 1978 -1336 2136 98 0 23 chr3 216452603 216452909 -1584249 + AluSc SINE Alu 1 299 -10 577 262 42 96 chr3 216452909 216452971 -1584187 + L2 LINE L2 1978 2009 -1305 848 182 50 13 chr3 216452971 216453130 -1584028 + FRAM SINE Alu 1 165 -1 577 262 42 96 chr3 216453130 216453213 -1583945 + L2 LINE L2 2009 2095 -1219 438 267 17 0 chr3 216453235 216453351 -1583807 + L2 LINE L2 2270 2387 -927 * 638 257 223 24 chr3 216453347 216453639 -1583519 + L2 LINE L2 2873 3222 -91 1986 131 31 3 chr3 216453830 216454120 -1583038 - AluSx SINE Alu -14 298 1 2303 113 0 0 chr3 216454422 216454723 -1582435 - AluSx SINE Alu -11 301 1 27 49 0 0 chr3 216454724 216454765 -1582393 + AT_rich Low_complexity Low_complexity 1 41 0 436 305 34 0 chr3 216455164 216455282 -1581876 + L2 LINE L2 3187 3308 -5 1379 193 7 25 chr3 216455388 216455673 -1581485 + AluJb SINE Alu 1 280 -32 387 0 0 0 chr3 216455673 216455716 -1581442 + (CAAAA)n Simple_repeat Simple_repeat 5 47 0 543 304 35 70 chr3 216455727 216455901 -1581257 + L1MEd LINE L1 5 184 -5935 2096 219 105 42 chr3 216455901 216456490 -1580668 + MLT1E2 LTR MaLR 1 626 0 543 304 35 70 chr3 216456490 216456716 -1580442 + L1MEd LINE L1 184 391 -5728 2066 109 0 59 chr3 216457050 216457370 -1579788 - AluSx SINE Alu -11 301 1 1645 181 26 0 chr3 216457524 216457828 -1579330 - AluJb SINE Alu 0 312 1 388 292 66 15 chr3 216458490 216458627 -1578531 - L3 LINE CR1 -4 1573 1430 662 233 0 0 chr3 216459258 216459387 -1577771 - FLAM_A SINE Alu -4 129 1 1914 143 0 39 chr3 216459453 216459760 -1577398 - AluSx SINE Alu -17 295 1 21 0 0 0 chr3 216459905 216459926 -1577232 + AT_rich Low_complexity Low_complexity 1 21 0 2148 96 7 0 chr3 216460547 216460828 -1576330 + AluSx SINE Alu 1 283 -29 228 35 0 0 chr3 216461861 216461890 -1575268 + (CA)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chr3 216462006 216462027 -1575131 + AT_rich Low_complexity Low_complexity 1 21 0 2109 120 0 10 chr3 216462047 216462338 -1574820 + AluSx SINE Alu 11 298 -14 813 161 0 0 chr3 216462358 216462495 -1574663 - AluSg/x SINE Alu -8 304 168 812 140 0 44 chr3 216462603 216462739 -1574419 + FLAM_C SINE Alu 14 143 0 2391 93 3 0 chr3 216462792 216463102 -1574056 + AluSp SINE Alu 1 311 -2 2381 92 7 0 chr3 216463710 216464016 -1573142 + AluSx SINE Alu 1 308 -4 1987 127 23 17 chr3 216464626 216464925 -1572233 - AluSx SINE Alu -11 301 1 207 364 23 0 chr3 216465100 216465188 -1571970 - MER5A DNA MER1_type -98 91 2 1137 136 12 0 chr3 216465223 216465385 -1571773 - AluSg/x SINE Alu -15 297 134 471 286 50 33 chr3 216465403 216465585 -1571573 + MER5A DNA MER1_type 2 186 -3 1836 148 95 0 chr3 216466118 216466475 -1570683 + L1 LINE L1 3356 3746 -2400 862 148 27 27 chr3 216466475 216466624 -1570534 + MSTD LTR MaLR 248 396 0 2004 213 120 34 chr3 216466666 216467192 -1569966 + MLT1E2 LTR MaLR 56 626 0 1774 257 84 72 chr3 216467408 216467787 -1569371 - L1ME3A LINE L1 -17 6153 5780 2321 103 0 3 chr3 216467787 216468087 -1569071 - AluSg SINE Alu -11 299 1 1774 257 84 72 chr3 216468087 216468661 -1568497 - L1ME3A LINE L1 -390 5780 5184 1987 96 6 74 chr3 216468689 216469001 -1568157 - AluSg SINE Alu -19 291 1 2174 109 3 22 chr3 216469003 216469316 -1567842 - AluSx SINE Alu -5 307 1 653 192 93 126 chr3 216469896 216470110 -1567048 + MER3 DNA MER1_type 3 209 0 1703 155 3 28 chr3 216470615 216470929 -1566229 - AluJb SINE Alu 0 307 1 2143 113 6 3 chr3 216471011 216471322 -1565836 - AluSx SINE Alu 0 312 1 2199 113 3 3 chr3 216471553 216471854 -1565304 - AluSx SINE Alu -10 302 2 832 72 0 0 chr3 216471859 216471956 -1565202 - AluSg SINE Alu -179 131 35 734 281 35 31 chr3 216472080 216472340 -1564818 + MIR SINE MIR 2 262 0 304 244 183 17 chr3 216472633 216472748 -1564410 + L2 LINE L2 3136 3269 -3 783 238 117 52 chr3 216472875 216472912 -1564246 - MLT1K LTR MaLR 0 588 555 2401 96 0 0 chr3 216472912 216473215 -1563943 + AluSg SINE Alu 1 303 -7 783 238 117 52 chr3 216473215 216473682 -1563476 - MLT1K LTR MaLR -33 555 4 2125 133 3 0 chr3 216473879 216474180 -1562978 - AluSx SINE Alu -10 302 1 192 307 79 31 chr3 216474506 216474633 -1562525 + MIR SINE MIR 33 165 -97 269 325 57 8 chr3 216474844 216474967 -1562191 + MIR SINE MIR 125 253 -9 1623 121 0 35 chr3 216475816 216475952 -1561206 + AluJb SINE Alu 2 141 -171 2210 100 0 0 chr3 216475952 216476241 -1560917 + AluSq SINE Alu 1 289 -24 464 59 47 0 chr3 216476241 216476326 -1560832 + (TA)n Simple_repeat Simple_repeat 2 90 0 1623 121 0 35 chr3 216476326 216476444 -1560714 + AluJb SINE Alu 139 248 -64 23 33 0 0 chr3 216477297 216477327 -1559831 + GC_rich Low_complexity Low_complexity 1 30 0 2499 58 0 0 chr3 216477968 216478261 -1558897 - AluSx SINE Alu -18 294 2 1305 156 35 89 chr3 216479911 216480226 -1556932 + AluJo SINE Alu 15 312 0 2366 90 3 0 chr3 216480310 216480611 -1556547 + AluSp SINE Alu 1 302 -11 1405 122 5 0 chr3 216480652 216480849 -1556309 + AluSg/x SINE Alu 106 303 -7 2072 119 37 0 chr3 216481500 216481795 -1555363 + AluSx SINE Alu 1 306 -6 1923 131 10 39 chr3 216481805 216482110 -1555048 + AluSx SINE Alu 1 296 -16 2538 80 3 0 chr3 216482489 216482801 -1554357 + AluSp SINE Alu 1 313 0 189 0 0 0 chr3 216483051 216483072 -1554086 + (TAA)n Simple_repeat Simple_repeat 2 22 0 347 194 0 0 chr3 216483467 216483529 -1553629 + Tigger2 DNA MER2_type 1 62 -2656 651 230 128 7 chr3 216483529 216483677 -1553481 - MER8 DNA MER2_type -73 166 1 226 319 163 14 chr3 216483932 216484073 -1553085 + MIR3 SINE MIR 32 193 -15 1986 152 10 0 chr3 216484093 216484390 -1552768 - AluSg SINE Alu -10 300 1 21 0 0 0 chr3 216486838 216486859 -1550299 + AT_rich Low_complexity Low_complexity 1 21 0 2088 125 17 0 chr3 216487575 216487871 -1549287 - AluSx SINE Alu -11 301 1 2139 99 3 10 chr3 216488144 216488456 -1548702 - AluY SINE Alu -1 310 1 2213 102 7 0 chr3 216488467 216488760 -1548398 - AluSx SINE Alu -15 297 3 227 132 26 0 chr3 216488773 216488811 -1548347 - L1M4 LINE L1 -1827 4319 4281 * 2319 194 42 21 chr3 216488808 216489328 -1547830 + L1MB8 LINE L1 5463 5993 -185 1698 167 14 10 chr3 216489883 216490171 -1546987 + AluJo SINE Alu 1 289 -23 1409 176 92 26 chr3 216490356 216490628 -1546530 + AluJb SINE Alu 1 290 -22 447 226 47 58 chr3 216491162 216491352 -1545806 - HAL1 LINE L1 -3 2504 2317 2032 92 6 63 chr3 216491374 216491689 -1545469 + AluSg1 SINE Alu 1 297 -12 334 220 7 23 chr3 216492330 216492416 -1544742 - MER2 DNA MER2_type -150 89 4 270 297 12 5 chr3 216492416 216492520 -1544638 - MER2 DNA MER2_type -136 103 1 25 0 0 0 chr3 216492843 216492868 -1544290 + AT_rich Low_complexity Low_complexity 1 25 0 225 91 0 0 chr3 216493343 216493376 -1543782 - Alu SINE Alu -35 285 253 720 224 0 20 chr3 216493414 216493561 -1543597 - FAM SINE Alu -41 144 1 1934 141 18 0 chr3 216494986 216495269 -1541889 + AluSx SINE Alu 1 288 -24 543 120 65 0 chr3 216495354 216495446 -1541712 - L1PA8 LINE L1 -2 6170 6073 2159 112 17 0 chr3 216495775 216496071 -1541087 - AluSx SINE Alu -2 310 10 2825 7 0 3 chr3 216496097 216496400 -1540758 - AluYa5 SINE Alu -9 302 1 713 153 144 0 chr3 216496400 216496518 -1540640 - AluSq/x SINE Alu -176 136 2 722 176 7 29 chr3 216496685 216496821 -1540337 - FLAM_A SINE Alu 0 133 1 1810 149 3 19 chr3 216497046 216497354 -1539804 + AluJb SINE Alu 1 303 -9 776 201 78 106 chr3 216498484 216498556 -1538602 + L1M4 LINE L1 3969 4041 -2105 2357 91 0 7 chr3 216498556 216498852 -1538306 + AluSg SINE Alu 1 294 -16 776 201 78 106 chr3 216498852 216499063 -1538095 + L1M4 LINE L1 4041 4244 -1902 610 161 15 92 chr3 216499079 216499209 -1537949 + AluJo SINE Alu 50 169 -143 897 196 12 24 chr3 216499701 216499869 -1537289 + AluJb SINE Alu 138 303 -9 719 176 7 29 chr3 216500784 216500920 -1536238 - FLAM_A SINE Alu 0 133 1 1810 149 3 19 chr3 216501145 216501453 -1535705 + AluJb SINE Alu 1 303 -9 2325 110 0 0 chr3 216502608 216502917 -1534241 + AluSg SINE Alu 1 309 -1 1865 120 102 0 chr3 216502929 216503204 -1533954 + AluSx SINE Alu 1 303 -9 24 32 0 0 chr3 216503260 216503291 -1533867 + AT_rich Low_complexity Low_complexity 1 31 0 22 70 0 0 chr3 216503653 216503696 -1533462 + AT_rich Low_complexity Low_complexity 1 43 0 412 188 350 12 chr3 216503846 216504006 -1533152 + MER33 DNA MER1_type 6 219 -105 210 301 11 54 chr3 216504058 216504151 -1533007 + L2 LINE L2 1815 1903 -1411 1378 151 57 0 chr3 216504241 216504453 -1532705 + AluJo SINE Alu 1 224 -88 300 102 0 0 chr3 216504477 216504526 -1532632 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 2429 75 7 0 chr3 216504556 216504862 -1532296 + AluY SINE Alu 1 308 -3 266 77 26 0 chr3 216504865 216504904 -1532254 + MER57A LTR ERV1 295 334 -69 525 200 120 0 chr3 216504925 216505075 -1532083 - L1ME4a LINE L1 -11 6110 5943 1703 129 0 140 chr3 216505251 216505608 -1531550 + AluJo SINE Alu 1 307 -5 2163 167 59 21 chr3 216505609 216506083 -1531075 + L1MB4 LINE L1 5660 6151 -29 27 29 0 0 chr3 216506861 216506895 -1530263 + AT_rich Low_complexity Low_complexity 1 34 0 303 188 0 0 chr3 216507326 216507374 -1529784 + L1MDa LINE L1 18 65 -6475 1176 172 186 75 chr3 216507494 216507660 -1529498 + L1MDa LINE L1 75 221 -6319 1909 131 41 0 chr3 216507660 216507951 -1529207 + AluSq SINE Alu 1 303 -10 1176 172 186 75 chr3 216507951 216508144 -1529014 + L1MDa LINE L1 221 474 -6066 * 4688 157 118 61 chr3 216508130 216508802 -1528356 + L1MDa LINE L1 1021 1653 -4887 1944 160 0 0 chr3 216508802 216509096 -1528062 - AluJb SINE Alu -18 294 1 4688 157 118 61 chr3 216509096 216509201 -1527957 + L1MDa LINE L1 1653 1751 -4789 1804 149 46 4 chr3 216509201 216509482 -1527676 - AluJb SINE Alu -19 293 1 4688 157 118 61 chr3 216509482 216509709 -1527449 + L1MDa LINE L1 1751 1964 -4576 1935 180 40 11 chr3 216509709 216510087 -1527071 - MLT1B LTR MaLR -1 389 1 4688 157 118 61 chr3 216510087 216510398 -1526760 + L1MDa LINE L1 1964 2413 -4127 964 112 6 96 chr3 216510527 216510705 -1526453 - AluY SINE Alu -14 297 136 356 200 0 0 chr3 216511014 216511079 -1526079 + L2 LINE L2 3207 3271 -1 672 200 24 0 chr3 216511442 216511567 -1525591 - FLAM_A SINE Alu -5 128 1 400 194 0 0 chr3 216511572 216511639 -1525519 - FRAM/FAM SINE Alu -109 67 1 378 224 0 0 chr3 216511644 216511711 -1525447 - FRAM/FAM SINE Alu -99 67 1 253 254 16 0 chr3 216512372 216512435 -1524723 - MIR SINE MIR -109 153 90 2432 90 0 0 chr3 216512447 216512746 -1524412 + AluSx SINE Alu 1 299 -13 2184 74 0 7 chr3 216512869 216513139 -1524019 + AluSg SINE Alu 23 290 -20 2651 61 0 0 chr3 216513141 216513452 -1523706 + AluY SINE Alu 1 311 0 821 165 8 8 chr3 216514024 216514157 -1523001 + FLAM_C SINE Alu 1 133 0 893 133 7 15 chr3 216514654 216514789 -1522369 - AluJo SINE Alu -178 134 1 1600 110 0 14 chr3 216515655 216515874 -1521284 - AluSp SINE Alu -97 216 1 26 0 0 0 chr3 216516678 216516704 -1520454 + GC_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr3 216516739 216516764 -1520394 + GC_rich Low_complexity Low_complexity 1 25 0 2524 28 7 0 chr3 216516972 216517255 -1519903 + SVA Other Other 1099 1383 -3 243 0 0 0 chr3 216517338 216517365 -1519793 + (A)n Simple_repeat Simple_repeat 1 27 0 1283 185 11 15 chr3 216517403 216517668 -1519490 + LTR14A LTR ERVK 3 266 -78 1138 261 138 34 chr3 216517678 216518114 -1519044 - MLT1K LTR MaLR -92 496 16 1944 148 6 25 chr3 216518393 216518711 -1518447 + AluSx SINE Alu 1 312 0 1346 183 73 38 chr3 216518725 216519198 -1517960 + L1M1 LINE L1 3344 3849 -3716 23 54 0 0 chr3 216523167 216523204 -1513954 + AT_rich Low_complexity Low_complexity 1 37 0 2188 69 3 43 chr3 216523292 216523596 -1513562 + AluSp SINE Alu 1 292 -21 1267 201 95 0 chr3 216523738 216524002 -1513156 - AluJb SINE Alu -23 289 1 327 336 64 7 chr3 216524558 216524698 -1512460 + L3 LINE CR1 1420 1567 -10 1710 164 27 3 chr3 216525720 216525848 -1511310 + AluSx SINE Alu 1 125 -187 432 0 0 0 chr3 216525848 216525896 -1511262 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 1710 164 27 3 chr3 216525896 216526065 -1511093 + AluSx SINE Alu 125 305 -7 231 304 68 61 chr3 216526132 216526280 -1510878 - L2 LINE L2 -8 3264 3116 1624 177 7 7 chr3 216526555 216526854 -1510304 + AluJo SINE Alu 14 312 0 2080 82 55 3 chr3 216527466 216527758 -1509400 + AluY SINE Alu 1 307 -4 21 0 0 0 chr3 216527958 216527979 -1509179 + AT_rich Low_complexity Low_complexity 1 21 0 267 247 86 0 chr3 216528116 216528197 -1508961 - MIR SINE MIR -59 203 116 501 202 123 18 chr3 216528603 216528717 -1508441 + MIR SINE MIR 29 154 -108 389 261 5 53 chr3 216528729 216528917 -1508241 + (TA)n Simple_repeat Simple_repeat 2 180 0 195 205 8 51 chr3 216528929 216529046 -1508112 + (CATA)n Simple_repeat Simple_repeat 1 112 0 781 265 65 23 chr3 216529068 216529283 -1507875 - MIR SINE MIR -27 235 12 214 299 26 26 chr3 216529285 216529341 -1507817 + MIR SINE MIR 154 209 -53 1790 94 47 14 chr3 216529341 216529617 -1507541 + AluSx SINE Alu 1 285 -27 189 0 0 0 chr3 216529617 216529638 -1507520 + (TTAA)n Simple_repeat Simple_repeat 2 22 0 214 299 26 26 chr3 216529638 216529657 -1507501 + MIR SINE MIR 207 230 -32 201 340 0 0 chr3 216529654 216529707 -1507451 - MIR SINE MIR -198 64 12 * 493 216 21 0 chr3 216529711 216529808 -1507350 + MIR SINE MIR 162 260 -2 1538 106 55 22 chr3 216529872 216530145 -1507013 - AluSx SINE Alu -30 282 1 2078 66 16 62 chr3 216533271 216533575 -1503583 + AluSx SINE Alu 13 302 -10 195 227 134 134 chr3 216533599 216533696 -1503462 + MIR SINE MIR 45 141 -67 944 106 8 0 chr3 216533984 216534116 -1503042 + FLAM_C SINE Alu 1 133 0 305 243 103 84 chr3 216534508 216534615 -1502543 - L2 LINE L2 -4 3268 3160 516 134 37 0 chr3 216534796 216534878 -1502280 - MER53 DNA DNA 0 189 105 2266 146 153 0 chr3 216534966 216535371 -1501787 + LTR24 LTR ERV1 1 467 0 403 95 16 0 chr3 216535372 216535435 -1501723 - MER53 DNA DNA -124 65 2 2003 120 20 0 chr3 216535450 216535750 -1501408 - AluSx SINE Alu -6 306 1 2089 109 3 0 chr3 216535878 216536171 -1500987 - AluSp SINE Alu -19 294 1 2299 84 0 7 chr3 216536193 216536501 -1500657 - AluSc SINE Alu -3 306 1 579 263 52 49 chr3 216536511 216536819 -1500339 - L1ME1 LINE L1 -1 6165 5857 * 1859 217 42 49 chr3 216536814 216537340 -1499818 - L1ME1 LINE L1 -1962 4184 3663 2370 70 0 0 chr3 216537501 216537801 -1499357 - AluSg SINE Alu -10 300 1 424 203 32 98 chr3 216538055 216538178 -1498980 - L2 LINE L2 0 3272 3158 263 205 0 145 chr3 216538178 216538261 -1498897 - L2 LINE L2 -44 3228 3158 264 205 0 145 chr3 216538261 216538344 -1498814 - L2 LINE L2 -44 3228 3158 182 161 0 0 chr3 216538838 216538869 -1498289 + L2 LINE L2 3217 3247 -25 1979 106 35 0 chr3 216539003 216539287 -1497871 - AluSx SINE Alu -18 294 1 560 214 107 6 chr3 216539732 216539900 -1497258 - L1MC4 LINE L1 -6 8036 7852 1588 119 104 0 chr3 216539915 216540166 -1496992 + AluSq SINE Alu 1 277 -36 705 184 19 6 chr3 216540318 216540476 -1496682 - L1 LINE L1 -3208 2938 2779 1607 77 0 18 chr3 216540478 216540698 -1496460 + AluSp SINE Alu 1 216 -97 836 133 7 15 chr3 216541564 216541699 -1495459 + AluJo SINE Alu 1 134 -178 823 165 8 8 chr3 216542196 216542329 -1494829 - FLAM_C SINE Alu 0 133 1 1071 104 0 88 chr3 216542901 216543094 -1494064 - AluY SINE Alu 0 311 136 413 271 28 83 chr3 216543325 216543469 -1493689 + L2 LINE L2 3136 3271 -1 678 200 24 0 chr3 216543832 216543957 -1493201 - FLAM_A SINE Alu -5 128 1 408 194 0 0 chr3 216543962 216544029 -1493129 - FRAM/FAM SINE Alu -109 67 1 387 224 0 0 chr3 216544034 216544101 -1493057 - FLAM_A SINE Alu -66 67 1 309 261 134 42 chr3 216544706 216544825 -1492333 - MIR SINE MIR -43 219 90 2298 90 0 0 chr3 216544837 216545136 -1492022 + AluSx SINE Alu 1 299 -13 2065 74 0 7 chr3 216545259 216545529 -1491629 + AluSg SINE Alu 23 290 -20 1925 84 94 4 chr3 216545531 216545806 -1491352 + AluSp SINE Alu 1 300 -13 1431 178 20 46 chr3 216545879 216546183 -1490975 + AluJo SINE Alu 1 296 -16 201 385 44 22 chr3 216546419 216546554 -1490604 + L2 LINE L2 2454 2591 -723 449 322 21 0 chr3 216546559 216546702 -1490456 + Charlie8 DNA MER1_type 7 152 -2265 1125 119 5 16 chr3 216546702 216546887 -1490271 + AluJo SINE Alu 120 302 -10 212 304 144 58 chr3 216546978 216547291 -1489867 + L2 LINE L2 2622 2961 -353 1754 133 17 10 chr3 216548884 216549177 -1487981 + AluJo SINE Alu 1 295 -17 1433 189 3 25 chr3 216549347 216549665 -1487493 - AluJo SINE Alu -1 311 1 194 406 32 16 chr3 216549835 216549958 -1487200 + MIR3 SINE MIR 4 128 -80 896 237 13 45 chr3 216550129 216550353 -1486805 - MIR SINE MIR -26 236 20 837 135 8 8 chr3 216550353 216550486 -1486672 - FLAM_C SINE Alu 0 133 1 2195 100 0 3 chr3 216550499 216550800 -1486358 - AluSx SINE Alu -12 300 1 1680 182 0 28 chr3 216551265 216551583 -1485575 - AluJo SINE Alu -3 309 1 271 307 193 17 chr3 216551664 216551840 -1485318 + MIR SINE MIR 31 237 -25 1992 70 4 0 chr3 216552163 216552419 -1484739 + AluY SINE Alu 3 259 -52 5649 198 32 19 chr3 216552550 216552874 -1484284 + L1MA6 LINE L1 2467 2785 -3361 2101 110 16 13 chr3 216552874 216553184 -1483974 - AluSx SINE Alu -1 311 1 5649 198 32 19 chr3 216553184 216554156 -1483002 + L1MA6 LINE L1 2785 3781 -2365 3279 179 33 50 chr3 216554146 216554433 -1482725 + L1MA6 LINE L1 5470 5760 -540 * 2019 116 3 0 chr3 216554433 216554726 -1482432 + AluSx SINE Alu 1 294 -18 3279 179 33 50 chr3 216554726 216555327 -1481831 + L1MA6 LINE L1 5760 6294 -6 2176 104 7 3 chr3 216555639 216555946 -1481212 - AluSq SINE Alu -5 308 1 1518 175 54 4 chr3 216556402 216556682 -1480476 + AluJb SINE Alu 1 294 -18 200 297 162 27 chr3 216557247 216557358 -1479800 + L2 LINE L2 3147 3272 0 1462 208 14 61 chr3 216557408 216557686 -1479472 - MLT1D LTR MaLR -8 497 207 2264 53 0 33 chr3 216557686 216557988 -1479170 - AluY SINE Alu -19 292 1 1959 158 0 0 chr3 216557998 216558302 -1478856 - AluJb SINE Alu -8 304 1 1462 208 14 61 chr3 216558302 216558557 -1478601 - MLT1D LTR MaLR -307 198 1 1960 133 10 0 chr3 216558716 216559016 -1478142 + AluSx SINE Alu 1 303 -9 720 200 24 41 chr3 216559398 216559568 -1477590 + MIR SINE MIR 13 179 -83 23 33 0 0 chr3 216559783 216559813 -1477345 + AT_rich Low_complexity Low_complexity 1 30 0 2234 103 3 0 chr3 216559823 216560133 -1477025 - AluSp SINE Alu -2 311 1 1391 176 42 31 chr3 216560511 216560800 -1476358 + AluJo SINE Alu 1 292 -20 348 347 41 0 chr3 216560937 216561035 -1476123 + MIR SINE MIR 7 108 -154 2317 74 3 10 chr3 216561037 216561348 -1475810 - AluY SINE Alu -2 309 1 255 386 116 21 chr3 216561381 216561666 -1475492 + L2 LINE L2 2148 2459 -855 2222 101 3 0 chr3 216561982 216562279 -1474879 + AluSq SINE Alu 1 298 -15 204 240 0 0 chr3 216562359 216562409 -1474749 + T-rich Low_complexity Low_complexity 1 50 0 525 202 119 41 chr3 216563094 216563312 -1473846 - L1ME4a LINE L1 -1 6120 5886 21 0 0 0 chr3 216563442 216563463 -1473695 + AT_rich Low_complexity Low_complexity 1 21 0 753 122 24 8 chr3 216563463 216563586 -1473572 - FLAM_C SINE Alu -8 125 1 1176 216 118 25 chr3 216563657 216564014 -1473144 - L1MC4a LINE L1 -1884 5924 5535 2145 98 0 23 chr3 216564015 216564320 -1472838 + AluSg SINE Alu 1 298 -12 225 242 53 11 chr3 216564413 216564508 -1472650 - L1MC4a LINE L1 -839 5307 5209 563 131 24 0 chr3 216564517 216564601 -1472557 - AluSp/q SINE Alu -7 306 221 21 36 0 0 chr3 216564817 216564845 -1472313 + AT_rich Low_complexity Low_complexity 1 28 0 2180 49 42 7 chr3 216565020 216565305 -1471853 - AluY SINE Alu -16 295 1 1867 152 3 7 chr3 216565656 216565966 -1471192 - AluJb SINE Alu -3 309 1 21 57 0 0 chr3 216565996 216566031 -1471127 + AT_rich Low_complexity Low_complexity 1 35 0 1677 151 24 10 chr3 216566341 216566639 -1470519 + AluSx SINE Alu 1 302 -10 1211 176 150 0 chr3 216566778 216567045 -1470113 - AluJo SINE Alu -5 307 1 2156 98 7 0 chr3 216567916 216568213 -1468945 - AluSp SINE Alu -13 300 2 240 329 177 32 chr3 216568405 216568563 -1468595 - MIR SINE MIR -78 184 4 2296 90 0 0 chr3 216568940 216569251 -1467907 - AluY SINE Alu 0 311 1 21 36 0 0 chr3 216569667 216569695 -1467463 + AT_rich Low_complexity Low_complexity 1 28 0 2137 86 0 20 chr3 216569695 216569987 -1467171 - AluSx SINE Alu -26 286 1 691 289 54 29 chr3 216570017 216570259 -1466899 - MIR SINE MIR -13 249 2 309 311 131 0 chr3 216570905 216571027 -1466131 - MIR SINE MIR 0 262 125 22 0 0 0 chr3 216572517 216572539 -1464619 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 216573488 216573516 -1463642 + AT_rich Low_complexity Low_complexity 1 28 0 857 151 7 0 chr3 216573517 216573656 -1463502 - FLAM_C SINE Alu -3 140 1 180 97 0 0 chr3 216573769 216573800 -1463358 + (T)n Simple_repeat Simple_repeat 1 31 0 315 274 282 26 chr3 216573941 216574331 -1462827 + L3 LINE CR1 1068 1557 -20 2074 87 7 0 chr3 216575967 216576243 -1460915 - AluSq SINE Alu -2 311 34 1590 122 66 26 chr3 216576753 216577024 -1460134 - AluJo SINE Alu -17 295 14 346 211 54 59 chr3 216577031 216577304 -1459854 - AluSg SINE Alu -111 189 3 849 102 0 0 chr3 216578177 216578295 -1458863 + AluSq/x SINE Alu 1 118 -194 21 36 0 0 chr3 216578295 216578323 -1458835 + AT_rich Low_complexity Low_complexity 1 28 0 1665 250 75 86 chr3 216579741 216580489 -1456669 - MER21B LTR ERV1 -111 752 13 722 228 114 0 chr3 216580836 216581003 -1456155 - MER20 DNA MER1_type -33 186 1 2164 98 7 0 chr3 216581914 216582210 -1454948 - AluSq SINE Alu -15 298 1 2130 159 48 32 chr3 216582248 216582681 -1454477 + L1MA4A LINE L1 5852 6291 -12 1712 155 3 14 chr3 216583053 216583343 -1453815 + AluJb SINE Alu 15 301 -11 898 216 59 39 chr3 216583343 216583598 -1453560 - L1MB8 LINE L1 -43 6135 5876 437 147 27 80 chr3 216583806 216583956 -1453202 - LTR41 LTR ERVL 0 795 648 556 89 13 0 chr3 216583970 216584049 -1453109 + AluS SINE Alu 8 87 -226 2130 105 0 0 chr3 216584049 216584334 -1452824 + AluSq SINE Alu 9 293 -20 867 266 101 79 chr3 216584342 216584978 -1452180 - LTR41 LTR ERVL -123 650 1 236 247 43 0 chr3 216587597 216587690 -1449468 + L1MC4 LINE L1 6607 6703 -1339 * 248 281 0 0 chr3 216587623 216587712 -1449446 - L1MC4 LINE L1 -1340 6702 6614 204 340 0 15 chr3 216588635 216588748 -1448410 - MIR SINE MIR -62 146 45 317 94 51 68 chr3 216591273 216591390 -1445768 + C-rich Low_complexity Low_complexity 5 119 0 1974 96 35 3 chr3 216595755 216596037 -1441121 + AluSq SINE Alu 1 291 -22 197 349 40 16 chr3 216596123 216596249 -1440909 + MIR SINE MIR 84 212 -50 201 180 0 0 chr3 216597438 216597488 -1439670 + T-rich Low_complexity Low_complexity 1 50 0 2285 86 0 0 chr3 216599378 216599670 -1437488 + AluSg SINE Alu 1 292 -18 271 259 0 0 chr3 216600514 216600572 -1436586 + MIR SINE MIR 65 122 -86 1840 155 10 0 chr3 216601056 216601360 -1435798 + AluSx SINE Alu 1 307 -5 194 213 40 80 chr3 216601984 216602059 -1435099 - L2 LINE L2 0 3272 3201 443 305 140 47 chr3 216602107 216602182 -1434976 + L1MD3 LINE L1 6861 6928 -1067 2162 98 0 3 chr3 216602182 216602477 -1434681 + AluSc SINE Alu 1 294 -15 443 305 140 47 chr3 216602477 216602637 -1434521 + L1MD3 LINE L1 6928 7118 -877 365 198 12 47 chr3 216602637 216602723 -1434435 + MLT1F1 LTR MaLR 43 125 -442 2349 189 46 44 chr3 216602723 216603310 -1433848 + L1MD3 LINE L1 7404 7991 -4 1689 115 0 0 chr3 216604316 216604550 -1432608 - AluSx SINE Alu -19 293 60 830 78 0 0 chr3 216604551 216604654 -1432504 - AluSq/x SINE Alu -197 116 14 199 51 0 51 chr3 216606146 216606185 -1430973 + (TGGGGG)n Simple_repeat Simple_repeat 5 41 0 209 195 0 0 chr3 216606270 216606311 -1430847 + CT-rich Low_complexity Low_complexity 2 42 0 310 259 7 48 chr3 216607436 216607583 -1429575 + (CACG)n Simple_repeat Simple_repeat 3 143 0 1908 201 15 10 chr3 216607782 216608189 -1428969 - L1MA4 LINE L1 -175 6125 5717 317 298 23 8 chr3 216608427 216608558 -1428600 - L1MEd LINE L1 -4912 1207 1075 574 226 170 0 chr3 216608568 216608727 -1428431 - MLT1B LTR MaLR -13 377 192 645 215 0 0 chr3 216608727 216608871 -1428287 + (CA)n Simple_repeat Simple_repeat 1 144 0 409 214 10 10 chr3 216608884 216608982 -1428176 - MLT1B LTR MaLR -217 173 76 1524 180 70 6 chr3 216609012 216609339 -1427819 + MLT1A1 LTR MaLR 7 354 -11 413 307 49 18 chr3 216609382 216609545 -1427613 - L1MEd LINE L1 -5030 1089 922 422 309 113 0 chr3 216611686 216611890 -1425268 + L1ME LINE L1 5584 5810 -311 589 271 133 37 chr3 216612577 216612990 -1424168 - MLT1D LTR MaLR -10 457 30 260 200 114 0 chr3 216615420 216615490 -1421668 - MER5A DNA MER1_type -65 124 47 2420 61 3 3 chr3 216616671 216616983 -1420175 - AluSp SINE Alu -1 312 1 1349 151 49 3 chr3 216616990 216617275 -1419883 - AluJb SINE Alu -14 298 1 204 282 0 27 chr3 216617696 216617806 -1419352 + C-rich Low_complexity Low_complexity 5 111 0 204 231 0 22 chr3 216617822 216617956 -1419202 + C-rich Low_complexity Low_complexity 2 132 0 226 287 46 35 chr3 216620409 216620496 -1416662 + MIR SINE MIR 171 258 -4 548 184 136 0 chr3 216621090 216621193 -1415965 + FLAM_C SINE Alu 1 117 -16 1099 190 63 0 chr3 216621985 216622190 -1414968 + AluJb SINE Alu 85 302 -10 605 277 21 41 chr3 216622474 216622682 -1414476 - L2 LINE L2 0 3313 3109 2024 152 3 13 chr3 216622682 216622997 -1414161 + AluJb SINE Alu 1 312 0 605 277 21 41 chr3 216622997 216623030 -1414128 - L2 LINE L2 -204 3109 3077 283 128 0 0 chr3 216624018 216624065 -1413093 - MADE1 DNA Mariner -33 47 1 184 356 59 45 chr3 216624159 216624381 -1412777 - L2 LINE L2 -199 3073 2849 * 311 272 42 11 chr3 216624375 216624602 -1412556 - L2 LINE L2 -285 2987 2748 24 0 0 0 chr3 216630438 216630462 -1406696 + AT_rich Low_complexity Low_complexity 1 24 0 333 0 0 0 chr3 216630736 216630773 -1406385 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 201 94 0 0 chr3 216631558 216631590 -1405568 + (TTC)n Simple_repeat Simple_repeat 3 34 0 228 176 0 0 chr3 216633378 216633429 -1403729 - Alu SINE Alu -4 298 248 228 262 85 43 chr3 216633552 216633693 -1403465 - L1ME LINE L1 -347 5823 5677 304 253 77 31 chr3 216633844 216634048 -1403110 - L1ME LINE L1 -637 5525 5296 1780 144 33 11 chr3 216634079 216634350 -1402808 - AluSx SINE Alu -25 287 11 7340 69 5 20 chr3 216634350 216635354 -1401804 + LTR13 LTR ERVK 19 1007 0 240 311 86 20 chr3 216635512 216635663 -1401495 - L2 LINE L2 -448 2866 2706 1173 296 50 28 chr3 216636239 216637230 -1399928 + L1ME1 LINE L1 4978 5994 -172 370 133 0 0 chr3 216637674 216637734 -1399424 - AluY SINE Alu -27 274 215 769 99 0 0 chr3 216637734 216637845 -1399313 + AluSp/q SINE Alu 186 296 -17 313 235 78 26 chr3 216637906 216638059 -1399099 + L1ME LINE L1 5605 5765 -356 881 144 7 0 chr3 216638325 216638464 -1398694 + AluJo SINE Alu 1 140 -172 193 229 0 0 chr3 216638657 216638692 -1398466 - MER5B DNA MER1_type -29 149 115 216 244 0 39 chr3 216639023 216639101 -1398057 + (CGGGG)n Simple_repeat Simple_repeat 2 76 0 2236 105 27 0 chr3 216641445 216641741 -1395417 - AluSx SINE Alu -8 304 1 1473 197 52 48 chr3 216644778 216644970 -1392188 + Charlie1b DNA MER1_type 6 196 -2565 1639 215 34 20 chr3 216644970 216645328 -1391830 - MLT1A1 LTR MaLR -2 363 1 1473 197 52 48 chr3 216645328 216645433 -1391725 + Charlie1b DNA MER1_type 196 299 -2462 949 90 7 35 chr3 216645433 216645444 -1391714 + L1PA12 LINE L1 6026 6036 -132 2342 86 3 0 chr3 216645444 216645735 -1391423 + AluSg SINE Alu 1 292 -18 2430 68 0 3 chr3 216645735 216646028 -1391130 + AluY SINE Alu 1 292 -19 949 90 7 35 chr3 216646028 216646159 -1390999 + L1PA12 LINE L1 6034 6165 -3 1473 197 52 48 chr3 216646159 216646266 -1390892 + Charlie1b DNA MER1_type 299 416 -2345 2320 94 0 3 chr3 216646266 216646565 -1390593 + AluSx SINE Alu 1 298 -14 1473 197 52 48 chr3 216646565 216646641 -1390517 + Charlie1b DNA MER1_type 416 490 -33 738 149 8 8 chr3 216646642 216646763 -1390395 + FLAM_C SINE Alu 14 134 -9 335 333 132 13 chr3 216647034 216647193 -1389965 + MER5B DNA MER1_type 1 178 0 2330 91 0 0 chr3 216647562 216647859 -1389299 + AluY SINE Alu 1 297 -14 277 141 0 127 chr3 216647984 216648055 -1389103 - AluJ/FRAM SINE Alu -9 293 232 871 215 79 23 chr3 216648193 216648458 -1388700 + AluJo SINE Alu 22 301 -11 2067 86 14 4 chr3 216648500 216648816 -1388342 - AluSx SINE Alu 0 319 1 411 249 124 23 chr3 216649159 216649336 -1387822 + MER3 DNA MER1_type 1 195 -14 4100 161 41 81 chr3 216650281 216651494 -1385664 + L1MA9 LINE L1 5152 6312 0 22 35 0 0 chr3 216651504 216651533 -1385625 + AT_rich Low_complexity Low_complexity 1 29 0 1404 128 0 10 chr3 216651590 216651786 -1385372 + AluSx SINE Alu 1 194 -118 1153 199 40 31 chr3 216651786 216652113 -1385045 + MER4A-int LTR ERV1 3352 3681 -2917 * 16076 98 55 37 chr3 216652112 216653352 -1383806 + MER4A-int LTR ERV1 3837 5054 -1544 2178 133 0 0 chr3 216653352 216653653 -1383505 + AluSg SINE Alu 1 301 -9 16076 98 55 37 chr3 216653653 216655126 -1382032 + MER4A-int LTR ERV1 5054 6598 0 556 122 0 20 chr3 216655127 216655225 -1381933 + MER4A LTR ERV1 1 96 -568 1922 123 3 19 chr3 216655227 216655578 -1381580 + MER4A LTR ERV1 261 664 0 4041 149 30 26 chr3 216655601 216656325 -1380833 + LTR8A LTR ERV1 1 727 0 300 77 0 39 chr3 216656375 216656427 -1380731 - L1MA7 LINE L1 -113 6178 6129 1074 138 38 0 chr3 216656427 216656586 -1380572 - AluSg/x SINE Alu -1 311 147 792 145 23 0 chr3 216656631 216656762 -1380396 - L1PA16 LINE L1 -8 6158 6025 717 217 0 0 chr3 216656780 216656909 -1380249 + FLAM_A SINE Alu 5 133 0 669 155 0 16 chr3 216656916 216657045 -1380113 - L1MA7 LINE L1 -175 6116 5990 21 36 0 0 chr3 216657055 216657083 -1380075 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr3 216657312 216657336 -1379822 + AT_rich Low_complexity Low_complexity 1 24 0 2170 124 6 13 chr3 216657336 216657650 -1379508 - AluSx SINE Alu 0 312 1 6407 124 38 2 chr3 216657652 216658899 -1378259 - L1MA3 LINE L1 0 6305 5007 777 197 0 7 chr3 216658899 216659036 -1378122 - AluSg/x SINE Alu -5 307 172 737 171 0 0 chr3 216659221 216659338 -1377820 + AluJb SINE Alu 2 118 -194 21 36 0 0 chr3 216659343 216659371 -1377787 + AT_rich Low_complexity Low_complexity 1 28 0 2102 116 0 0 chr3 216659493 216659761 -1377397 - AluSq SINE Alu -11 302 35 4059 134 28 114 chr3 216659763 216660260 -1376898 - L1MA3 LINE L1 -1133 5013 4647 342 0 0 0 chr3 216660260 216660298 -1376860 + (TG)n Simple_repeat Simple_repeat 1 38 0 4059 134 28 114 chr3 216660298 216660817 -1376341 - L1MA3 LINE L1 -1499 4647 4085 2241 108 3 0 chr3 216660817 216661114 -1376044 + AluSx SINE Alu 1 298 -14 185 180 20 0 chr3 216663202 216663252 -1373906 + (TCCA)n Simple_repeat Simple_repeat 2 52 0 237 247 176 0 chr3 216663289 216663374 -1373784 - L2 LINE L2 -5 3267 3168 316 309 159 0 chr3 216663439 216663565 -1373593 + MER91A DNA MER1_type 1 146 -50 235 321 43 43 chr3 216667014 216667154 -1370004 - MIR SINE MIR -13 249 110 1155 181 6 0 chr3 216668286 216668468 -1368690 + AluJo SINE Alu 1 183 -129 2119 125 7 10 chr3 216668722 216669027 -1368131 - AluSx SINE Alu -8 304 1 21 36 0 0 chr3 216669158 216669186 -1367972 + AT_rich Low_complexity Low_complexity 1 28 0 2544 44 0 7 chr3 216669361 216669658 -1367500 - AluY SINE Alu -16 295 1 2016 139 10 3 chr3 216669663 216669964 -1367194 - AluSx SINE Alu -9 303 1 656 286 75 29 chr3 216670243 216670484 -1366674 + MLT1K LTR MaLR 16 267 -321 633 106 12 0 chr3 216670591 216670676 -1366482 - AluSc SINE Alu -134 175 90 1936 94 4 4 chr3 216670679 216670973 -1366185 + AluY SINE Alu 13 283 -28 541 99 0 0 chr3 216671546 216671617 -1365541 + FLAM SINE Alu 49 119 -24 1113 168 55 0 chr3 216671858 216672060 -1365098 - AluJb SINE Alu -15 297 85 374 154 15 15 chr3 216672635 216672700 -1364458 - AluS SINE Alu -235 66 2 1033 208 76 66 chr3 216672874 216673028 -1364130 + L1M1 LINE L1 3191 3342 -4223 1884 138 6 25 chr3 216673028 216673346 -1363812 + AluSx SINE Alu 1 312 0 1033 208 76 66 chr3 216673346 216673727 -1363431 + L1M1 LINE L1 3342 3739 -3826 6096 60 13 31 chr3 216673887 216674758 -1362400 - SVA Other Other 0 1386 532 765 150 0 38 chr3 216675040 216675173 -1361985 + FLAM_C SINE Alu 16 143 0 2201 104 3 0 chr3 216675226 216675535 -1361623 + AluSp SINE Alu 1 310 -3 705 188 12 61 chr3 216726263 216726367 -1310791 + MER5B DNA MER1_type 19 114 -64 2494 64 3 3 chr3 216726367 216726665 -1310493 - AluSg SINE Alu -12 298 1 705 188 12 61 chr3 216726665 216726725 -1310433 + MER5B DNA MER1_type 114 175 -3 2115 119 6 52 chr3 216727376 216727704 -1309454 + AluSq SINE Alu 1 313 0 2637 148 26 9 chr3 216727715 216728168 -1308990 - LTR32 LTR ERVL 0 471 11 2408 91 0 7 chr3 216728171 216728479 -1308679 - AluSx SINE Alu -6 306 1 1435 296 43 18 chr3 216729307 216730263 -1306895 + HERV16 LTR ERVL 981 2064 -2932 198 245 252 7 chr3 216730263 216730335 -1306823 - L2 LINE L2 -2805 509 456 2209 106 0 0 chr3 216730335 216730644 -1306514 + AluSg SINE Alu 1 309 0 198 245 252 7 chr3 216730644 216730713 -1306445 - L2 LINE L2 -2858 456 332 230 167 200 0 chr3 216730965 216731025 -1306133 - L2 LINE L2 -8 3264 3193 430 341 0 22 chr3 216731716 216731851 -1305307 - L1MC4 LINE L1 -1298 6744 6613 350 344 0 33 chr3 216731744 216731866 -1305292 + L1MC4 LINE L1 6586 6703 -1339 * 1246 137 44 5 chr3 216731978 216732183 -1304975 - AluJo SINE Alu -99 213 1 325 299 10 0 chr3 216732183 216732280 -1304878 + Zaphod DNA AcHobo 3932 4029 -2 318 298 106 0 chr3 216732283 216732435 -1304723 - L1MC4 LINE L1 -2325 5483 5302 2192 113 0 23 chr3 216732435 216732766 -1304392 - AluSg SINE Alu 0 310 1 318 298 106 0 chr3 216732766 216732821 -1304337 - L1MC4 LINE L1 -2506 5302 5254 272 269 15 15 chr3 216732902 216733032 -1304126 + (TA)n Simple_repeat Simple_repeat 2 131 0 1773 164 33 10 chr3 216733083 216733388 -1303770 - AluJo SINE Alu 0 312 1 409 206 0 41 chr3 216733389 216733486 -1303672 - AluJo SINE Alu -164 138 46 23 0 0 0 chr3 216733524 216733547 -1303611 + AT_rich Low_complexity Low_complexity 1 23 0 1006 261 68 77 chr3 216733693 216733988 -1303170 + L1MEc LINE L1 1257 1553 -4843 495 233 23 0 chr3 216733988 216734117 -1303041 + FLAM_A SINE Alu 1 132 -1 1006 261 68 77 chr3 216734117 216734540 -1302618 + L1MEc LINE L1 1553 1969 -4427 323 37 0 37 chr3 216734547 216734601 -1302557 - AluY SINE Alu 0 301 250 1666 109 5 5 chr3 216734701 216734922 -1302236 - AluSq SINE Alu -88 225 5 550 188 18 0 chr3 216734933 216735045 -1302113 + Charlie5 DNA MER1_type 2472 2585 -27 2822 199 45 22 chr3 216735105 216735778 -1301380 + MER76 LTR ERV 1 688 0 2163 111 0 36 chr3 216735781 216736087 -1301071 - AluSx SINE Alu -17 295 1 352 313 21 43 chr3 216736143 216736376 -1300782 - LTR33 LTR ERVL 0 521 294 286 357 51 34 chr3 216736468 216736703 -1300455 - LTR33 LTR ERVL -183 338 100 782 108 209 0 chr3 216736802 216736941 -1300217 + AluSg/x SINE Alu 81 248 -62 1305 98 65 42 chr3 216736941 216737156 -1300002 + AluSg/x SINE Alu 85 304 -8 21 0 0 0 chr3 216738506 216738527 -1298631 + AT_rich Low_complexity Low_complexity 1 21 0 192 162 0 27 chr3 216738570 216738607 -1298551 + MIR SINE MIR 62 97 -111 2359 115 0 0 chr3 216738695 216739000 -1298158 - AluSx SINE Alu -7 305 1 2321 104 7 3 chr3 216739667 216739976 -1297182 - AluSg SINE Alu 0 310 1 2086 135 0 10 chr3 216740333 216740636 -1296522 - AluSx SINE Alu -12 300 1 1441 255 99 36 chr3 216741133 216741466 -1295692 - L2 LINE L2 -1 3312 3001 668 253 17 0 chr3 216741466 216741640 -1295518 - MER69A DNA AcHobo 0 177 1 1441 255 99 36 chr3 216741640 216741820 -1295338 - L2 LINE L2 -312 3001 2834 1621 161 15 0 chr3 216741820 216742081 -1295077 - AluJb SINE Alu -47 265 1 1441 255 99 36 chr3 216742081 216742429 -1294729 - L2 LINE L2 -479 2834 2395 2041 118 0 14 chr3 216742429 216742718 -1294440 - AluSx SINE Alu -8 304 20 612 231 98 62 chr3 216744087 216744343 -1292815 - L2 LINE L2 -3 3310 3046 1263 112 12 0 chr3 216745458 216745627 -1291531 + AluSg/x SINE Alu 125 295 -15 2329 102 0 16 chr3 216746394 216746698 -1290460 - AluSg SINE Alu -11 299 1 238 135 0 0 chr3 216746743 216746780 -1290378 + MLT1A1 LTR MaLR 1 37 -328 373 297 65 13 chr3 216747348 216747503 -1289655 - MER5A DNA MER1_type -5 184 22 747 258 19 44 chr3 216747554 216747825 -1289333 + L1MC5 LINE L1 7650 7913 -48 272 246 177 39 chr3 216747850 216747980 -1289178 + MER5B DNA MER1_type 31 178 0 334 317 90 12 chr3 216748094 216748261 -1288897 + MLT1J LTR MaLR 1 180 -331 2459 64 7 0 chr3 216748709 216749005 -1288153 - AluSp SINE Alu -11 302 5 446 329 104 5 chr3 216749382 216749604 -1287554 + L3 LINE CR1 847 1090 -487 638 302 160 13 chr3 216749844 216750294 -1286864 + L3 LINE CR1 1050 1565 -12 1719 108 72 4 chr3 216750964 216751215 -1285943 + AluSx SINE Alu 1 268 -44 1292 206 50 58 chr3 216751758 216752008 -1285150 + MLT2D LTR ERVL 59 310 -104 3726 96 7 25 chr3 216752008 216752572 -1284586 - MER41A LTR ERV1 0 554 1 1292 206 50 58 chr3 216752572 216752630 -1284528 + MLT2D LTR ERVL 310 366 -48 399 41 0 0 chr3 216752630 216752679 -1284479 + (CA)n Simple_repeat Simple_repeat 1 49 0 1292 206 50 58 chr3 216752679 216752728 -1284430 + MLT2D LTR ERVL 366 414 0 248 329 100 44 chr3 216754808 216755138 -1282020 + L1ME LINE L1 4133 4443 -1703 2293 110 7 0 chr3 216755138 216755448 -1281710 + AluSp SINE Alu 1 312 -1 248 329 100 44 chr3 216755448 216756276 -1280882 + L1ME LINE L1 4443 5398 -748 471 219 160 6 chr3 216756802 216756971 -1280187 + L1ME LINE L1 5611 5805 -316 873 92 0 0 chr3 216758445 216758554 -1278604 + AluSq/x SINE Alu 1 109 -203 958 182 7 162 chr3 216758662 216758958 -1278200 + MLT1A1 LTR MaLR 116 365 0 843 198 87 55 chr3 216759016 216759269 -1277889 - MIR SINE MIR -1 261 1 1506 242 146 29 chr3 216759918 216760469 -1276689 - MLT1G LTR MaLR -6 584 13 2309 112 0 13 chr3 216761379 216761693 -1275465 - AluSg SINE Alu 0 310 1 2384 96 6 6 chr3 216764991 216765304 -1271854 + AluSq SINE Alu 1 313 0 321 371 35 21 chr3 216766187 216766330 -1270828 + L2 LINE L2 3127 3271 -1 845 74 8 0 chr3 216766524 216766646 -1270512 + (CA)n Simple_repeat Simple_repeat 1 123 0 2270 109 3 3 chr3 216767781 216768093 -1269065 + AluSx SINE Alu 1 312 0 406 301 32 0 chr3 216768120 216768258 -1268900 - MIR SINE MIR -63 145 1 413 304 130 26 chr3 216769574 216769804 -1267354 - L3 LINE CR1 -89 1488 1235 507 322 0 0 chr3 216770038 216770181 -1266977 - MIR SINE MIR -70 192 50 2152 109 10 40 chr3 216770305 216770609 -1266549 - AluSx SINE Alu -17 295 1 213 39 0 0 chr3 216770734 216770760 -1266398 + (CAGG)n Simple_repeat Simple_repeat 3 28 0 335 296 23 61 chr3 216772758 216772890 -1264268 + MIR SINE MIR 10 136 -72 211 310 121 17 chr3 216772957 216773073 -1264085 + MIR SINE MIR 123 250 -12 2284 89 0 7 chr3 216773569 216773862 -1263296 - AluSg1 SINE Alu -18 291 1 197 405 8 0 chr3 216774119 216774245 -1262913 - L2 LINE L2 -181 3091 2965 1201 221 102 30 chr3 216775360 216775830 -1261328 + MLT1J LTR MaLR 4 507 -4 567 299 99 9 chr3 216775905 216776126 -1261032 - MIR SINE MIR -3 259 19 2163 117 0 29 chr3 216776364 216776672 -1260486 - AluSx SINE Alu -13 299 1 2011 106 92 0 chr3 216776675 216776948 -1260210 - AluSx SINE Alu -14 298 1 304 232 24 12 chr3 216777034 216777116 -1260042 + CT-rich Low_complexity Low_complexity 3 85 0 280 309 9 27 chr3 216777251 216777380 -1259778 + MIR SINE MIR 32 144 -64 765 172 0 8 chr3 216777398 216777532 -1259626 - FLAM_A SINE Alu 0 133 1 441 242 97 0 chr3 216777571 216777695 -1259463 - MIR SINE MIR -44 218 83 21 82 0 0 chr3 216778264 216778313 -1258845 + GC_rich Low_complexity Low_complexity 1 49 0 267 31 0 0 chr3 216779022 216779054 -1258104 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 193 340 82 0 chr3 216779057 216779154 -1258004 + MIR3 SINE MIR 71 175 -33 909 110 124 7 chr3 216779174 216779319 -1257839 + FRAM SINE Alu 1 160 -16 2230 100 3 3 chr3 216779796 216780087 -1257071 - AluSc SINE Alu -18 291 1 310 162 59 0 chr3 216780088 216780156 -1257002 - MIR SINE MIR -60 148 77 354 265 31 20 chr3 216780827 216780925 -1256233 - MIR SINE MIR -62 146 48 1999 124 48 7 chr3 216781080 216781371 -1255787 + AluSg SINE Alu 5 307 -3 259 282 45 27 chr3 216781454 216781564 -1255594 + MIR SINE MIR 34 145 -63 316 307 20 46 chr3 216781600 216781753 -1255405 + MER5A DNA MER1_type 37 185 -4 622 211 0 8 chr3 216782311 216782439 -1254719 - LTR67 LTR ERVL -3 554 428 551 310 123 57 chr3 216782945 216783749 -1253409 - L2 LINE L2 0 3313 2443 253 234 39 26 chr3 216784105 216784182 -1252976 - L2 LINE L2 -891 2423 2346 517 275 144 0 chr3 216784457 216784617 -1252541 - MIR SINE MIR -72 190 8 413 222 130 0 chr3 216784691 216784799 -1252359 - FLAM_A SINE Alu -8 125 4 291 241 54 62 chr3 216785415 216785527 -1251631 + MIR SINE MIR 111 221 -41 237 132 0 0 chr3 216785558 216785596 -1251562 + (CAT)n Simple_repeat Simple_repeat 2 39 0 2227 120 7 0 chr3 216785720 216786012 -1251146 + AluSx SINE Alu 1 294 -18 2277 87 7 0 chr3 216787389 216787675 -1249483 + AluSg SINE Alu 1 288 -22 2011 154 0 0 chr3 216789470 216789763 -1247395 - AluJb SINE Alu -10 302 10 333 182 0 0 chr3 216789763 216789818 -1247340 - AluS SINE Alu -239 60 6 2520 81 0 0 chr3 216790633 216790930 -1246228 + AluSc SINE Alu 3 299 -10 352 329 107 0 chr3 216791536 216791676 -1245482 + L2 LINE L2 3117 3271 -1 2309 110 3 22 chr3 216793033 216793352 -1243806 - AluSq SINE Alu 0 313 1 224 236 14 14 chr3 216793535 216793607 -1243551 - MIR3 SINE MIR -50 158 87 2428 105 0 0 chr3 216793788 216794092 -1243066 - AluSx SINE Alu -8 304 1 230 293 98 45 chr3 216794677 216794810 -1242348 - MIR SINE MIR -50 212 73 2262 103 16 7 chr3 216795166 216795476 -1241682 - AluSq SINE Alu 0 313 1 201 81 81 0 chr3 216795572 216795609 -1241549 - MIR SINE MIR -57 151 112 291 28 0 0 chr3 216796075 216796111 -1241047 + (TG)n Simple_repeat Simple_repeat 2 37 0 213 276 161 11 chr3 216796159 216796246 -1240912 + MIR SINE MIR 32 131 -131 1366 228 86 18 chr3 216796593 216796987 -1240171 + MLT1C LTR MaLR 1 421 -46 542 139 0 0 chr3 216796988 216797067 -1240091 - FRAM/FAM SINE Alu -98 78 1 287 235 15 15 chr3 216797067 216797135 -1240023 + MLT1C LTR MaLR 400 467 0 848 289 95 27 chr3 216797350 216797751 -1239407 - L2 LINE L2 -623 2691 2264 238 299 75 46 chr3 216798430 216798604 -1238554 + MIR SINE MIR 9 150 -58 2424 97 0 3 chr3 216798625 216798933 -1238225 + AluSc SINE Alu 1 307 -2 845 160 43 37 chr3 216799234 216799268 -1237890 + MER53 DNA DNA 2 34 -155 1997 154 0 3 chr3 216799268 216799581 -1237577 + AluJb SINE Alu 1 312 0 845 160 43 37 chr3 216799581 216799732 -1237426 + MER53 DNA DNA 34 189 0 2382 96 7 0 chr3 216799876 216800179 -1236979 + AluSx SINE Alu 1 305 -7 241 240 0 0 chr3 216800816 216800866 -1236292 + CT-rich Low_complexity Low_complexity 4 53 0 2383 95 7 0 chr3 216801745 216802041 -1235117 - AluSx SINE Alu -13 299 2 1607 120 196 41 chr3 216802357 216802554 -1234604 - MSTA LTR MaLR -3 425 260 2276 88 0 42 chr3 216802554 216802862 -1234296 - AluSp SINE Alu -18 295 1 1607 120 196 41 chr3 216802862 216803032 -1234126 - MSTA LTR MaLR -168 260 1 2137 118 0 0 chr3 216804242 216804521 -1232637 + AluSx SINE Alu 1 279 -33 315 0 0 0 chr3 216804521 216804556 -1232602 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 448 293 82 43 chr3 216805015 216805223 -1231935 + MIR SINE MIR 46 261 -1 2111 148 5 47 chr3 216806041 216806445 -1230713 + MLT1B LTR MaLR 4 390 0 1623 120 44 0 chr3 216807313 216807587 -1229571 - L1MA4 LINE L1 -5 6295 6010 219 258 0 16 chr3 216808312 216808374 -1228784 + L2 LINE L2 2993 3053 -219 2227 114 0 0 chr3 216809093 216809391 -1227767 + AluSx SINE Alu 1 298 -14 2046 133 3 38 chr3 216810255 216810622 -1226536 + MER41A LTR ERV1 201 554 0 906 259 61 0 chr3 216810625 216810872 -1226286 - MLT2D LTR ERVL -94 320 59 984 228 101 66 chr3 216810879 216811305 -1225853 - LTR27 LTR ERV1 -4 632 192 679 224 40 17 chr3 216811277 216811451 -1225707 - LTR28 LTR ERV1 -842 178 1 * 756 205 72 26 chr3 216811555 216811590 -1225568 - Ricksha DNA DNA -2858 388 345 906 187 6 28 chr3 216811590 216811772 -1225386 - ERVL-D LTR ERVL 0 5764 5587 718 71 0 10 chr3 216811772 216811871 -1225287 + MER4A LTR ERV1 1 98 -566 1933 109 17 30 chr3 216811871 216812221 -1224937 + MER4A LTR ERV1 261 664 0 2821 138 47 6 chr3 216812222 216812707 -1224451 - ERVL-D LTR ERVL -175 5589 5085 238 156 133 0 chr3 216812746 216812791 -1224367 + MLT2D LTR ERVL 238 288 -126 1674 186 6 29 chr3 216813775 216813940 -1223218 - AluJo SINE Alu -7 305 149 4733 82 9 11 chr3 216813940 216814608 -1222550 - PABL_B LTR ERV1 0 667 1 1674 186 6 29 chr3 216814608 216814754 -1222404 - AluJo SINE Alu -163 149 1 1953 154 33 33 chr3 216814773 216815137 -1222021 - THE1B LTR MaLR 0 364 1 10970 103 15 1 chr3 216815137 216816695 -1220463 - THE1B-int LTR MaLR 0 1580 1 1940 128 28 92 chr3 216816695 216817084 -1220074 - THE1B LTR MaLR 0 364 1 478 286 50 20 chr3 216817383 216817582 -1219576 + MIR SINE MIR 32 236 -26 1616 138 5 57 chr3 216818814 216819176 -1217982 - MER4A LTR ERV1 -2 662 261 645 134 0 0 chr3 216819176 216819273 -1217885 - MER4A LTR ERV1 -566 98 2 15185 129 58 28 chr3 216819280 216821312 -1215846 - MER4A-int LTR ERV1 -1 6597 4628 2141 113 3 0 chr3 216821312 216821623 -1215535 + AluSp SINE Alu 1 312 0 15185 129 58 28 chr3 216821623 216822416 -1214742 - MER4A-int LTR ERV1 -1970 4628 3860 2274 119 7 0 chr3 216822416 216822718 -1214440 - AluSx SINE Alu -8 304 1 15185 129 58 28 chr3 216822718 216823025 -1214133 - MER4A-int LTR ERV1 -2738 3860 1862 552 153 20 0 chr3 216823025 216823123 -1214035 + LTR8 LTR ERV1 1 100 -591 527 55 0 14 chr3 216823124 216823197 -1213961 + MER4B-int LTR ERV1 202 273 -6485 716 127 48 30 chr3 216823203 216823369 -1213789 - MER4A-int LTR ERV1 -4674 1924 1756 * 4305 119 25 14 chr3 216823365 216824313 -1212845 - MER4A-int LTR ERV1 -5420 1198 198 1274 252 66 9 chr3 216824332 216824681 -1212477 - MER4A-int LTR ERV1 -4107 2224 1856 197 33 33 0 chr3 216824729 216824759 -1212399 + (TTG)n Simple_repeat Simple_repeat 2 32 0 277 184 0 53 chr3 216824761 216824837 -1212321 - MER4A-int LTR ERV1 -5775 823 752 2481 119 82 50 chr3 216824873 216825395 -1211763 - MER4A-int LTR ERV1 -5985 613 1 1453 123 70 66 chr3 216825398 216825740 -1211418 - MER4A LTR ERV1 0 664 263 549 146 21 0 chr3 216825740 216825836 -1211322 - MER4A LTR ERV1 -566 98 1 4656 50 26 0 chr3 216825838 216826414 -1210744 - LTR10C LTR ERV1 0 591 1 367 187 13 13 chr3 216826940 216827015 -1210143 - LTR16C LTR ERVL 0 491 417 2486 77 10 0 chr3 216827238 216827536 -1209622 + AluSq SINE Alu 1 301 -12 335 297 81 84 chr3 216827976 216828272 -1208886 - LTR16C LTR ERVL -74 417 123 1637 153 109 0 chr3 216828800 216829075 -1208083 - AluSx SINE Alu -7 305 1 1656 142 35 22 chr3 216829203 216829548 -1207610 - MER4A LTR ERV1 0 664 257 508 155 10 10 chr3 216829544 216829641 -1207517 - MER4A LTR ERV1 -566 98 2 * 2374 75 10 0 chr3 216829858 216830152 -1207006 - AluSx SINE Alu -15 297 1 278 312 29 14 chr3 216831085 216831223 -1205935 - MIR3 SINE MIR -46 162 23 180 0 0 0 chr3 216831269 216831289 -1205869 + (TCC)n Simple_repeat Simple_repeat 1 20 0 224 374 8 46 chr3 216832083 216832214 -1204944 - L2 LINE L2 -4 3268 3143 593 239 33 164 chr3 216832599 216832988 -1204170 + L2 LINE L2 2405 2742 -572 2607 66 0 0 chr3 216832988 216833289 -1203869 - AluSc SINE Alu -8 301 1 2160 130 0 0 chr3 216833320 216833604 -1203554 + AluSx SINE Alu 1 284 -28 2165 244 194 6 chr3 216833608 216834616 -1202542 - L2 LINE L2 -6 3307 2107 5266 94 16 9 chr3 216834835 216835609 -1201549 + L1MA2 LINE L1 5526 6304 0 2495 87 0 0 chr3 216837657 216837969 -1199189 - AluSx SINE Alu 0 312 1 427 338 22 0 chr3 216838431 216838570 -1198588 - L2 LINE L2 -3 3310 3169 309 322 206 3 chr3 216838670 216838962 -1198196 - L2 LINE L2 -350 2964 2614 323 262 180 25 chr3 216839750 216839872 -1197286 - MIR3 SINE MIR -48 160 20 2284 98 10 0 chr3 216840386 216840683 -1196475 - AluSx SINE Alu -12 300 1 291 147 3 0 chr3 216840691 216840752 -1196406 - L1MC4a LINE L1 0 7808 7760 1376 134 0 14 chr3 216840858 216841067 -1196091 + AluSg/x SINE Alu 86 291 -21 4117 102 15 88 chr3 216841124 216841689 -1195469 - LTR8 LTR ERV1 0 691 193 2162 104 32 0 chr3 216841689 216841968 -1195190 + AluSq SINE Alu 3 290 -23 4117 102 15 88 chr3 216841968 216842148 -1195010 - LTR8 LTR ERV1 -498 193 1 22 0 0 0 chr3 216842400 216842422 -1194736 + AT_rich Low_complexity Low_complexity 1 22 0 2315 92 0 0 chr3 216842475 216842790 -1194368 + AluSq SINE Alu 1 313 0 1729 158 9 65 chr3 216842909 216843250 -1193908 + L1MDa LINE L1 1 322 -6218 2134 216 53 26 chr3 216843262 216843838 -1193320 + L1M4 LINE L1 3793 4390 -1756 2003 151 0 0 chr3 216843838 216844164 -1192994 + AluJb SINE Alu 1 326 0 2134 216 53 26 chr3 216844164 216844210 -1192948 + L1M4 LINE L1 4390 4433 -1713 296 279 225 0 chr3 216844649 216844778 -1192380 + MIR3 SINE MIR 41 198 -10 * 525 302 104 5 chr3 216844775 216844997 -1192161 - MIR SINE MIR 0 262 19 564 225 115 16 chr3 216845186 216845368 -1191790 + MIR3 SINE MIR 5 204 -4 808 278 28 8 chr3 216845582 216845834 -1191324 - Charlie8 DNA MER1_type -2135 282 26 227 337 35 79 chr3 216846645 216846847 -1190311 + L2 LINE L2 3033 3225 -47 2422 100 0 3 chr3 216846905 216847214 -1189944 + AluSg SINE Alu 2 309 -1 226 234 131 58 chr3 216847863 216848000 -1189158 + L2 LINE L2 3162 3308 -5 219 292 21 62 chr3 216848148 216848244 -1188914 - MIR3 SINE MIR -6 202 111 2144 145 0 0 chr3 216848894 216849204 -1187954 - AluJb SINE Alu -2 310 1 1039 173 13 49 chr3 216850017 216850242 -1186916 - MER20 DNA MER1_type 0 219 3 346 125 102 0 chr3 216850777 216850865 -1186293 - L1MB3 LINE L1 0 6183 6087 475 160 0 0 chr3 216850871 216850965 -1186193 - L1MA4 LINE L1 -281 6019 5926 267 322 0 11 chr3 216851126 216851303 -1185855 + (CACCC)n Simple_repeat Simple_repeat 2 176 0 211 335 0 12 chr3 216851346 216851510 -1185648 + (CACCC)n Simple_repeat Simple_repeat 3 164 0 207 324 0 22 chr3 216852404 216852586 -1184572 + (CACCC)n Simple_repeat Simple_repeat 3 180 0 214 315 140 28 chr3 216853526 216853669 -1183489 - MER91A DNA MER1_type -13 183 25 420 273 60 13 chr3 216853728 216853779 -1183379 - MIR SINE MIR -7 255 208 2290 98 3 41 chr3 216853779 216854095 -1183063 - AluSp SINE Alu -9 304 1 420 273 60 13 chr3 216854095 216854193 -1182965 - MIR SINE MIR -54 208 99 2144 91 0 47 chr3 216854560 216854900 -1182258 + AluSp SINE Alu 1 326 0 2283 116 3 0 chr3 216856272 216856583 -1180575 - AluSx SINE Alu 0 312 1 182 298 51 0 chr3 216857358 216857437 -1179721 + MIR SINE MIR 81 135 -73 417 251 227 97 chr3 216857474 216857857 -1179301 - L3 LINE CR1 -177 1400 968 382 333 115 21 chr3 216857874 216858153 -1179005 - L1M4 LINE L1 -1589 4557 4253 2375 86 3 3 chr3 216858329 216858632 -1178526 - AluSx SINE Alu -9 303 1 303 109 0 0 chr3 216858824 216858870 -1178288 + L1MB7 LINE L1 6109 6154 -30 268 237 18 114 chr3 216858924 216859038 -1178120 + MIR SINE MIR 43 145 -63 2252 84 7 13 chr3 216859258 216859386 -1177772 + AluSc SINE Alu 5 132 -177 2385 88 10 0 chr3 216859386 216859692 -1177466 + AluSp SINE Alu 2 310 -3 2252 84 7 13 chr3 216859692 216859862 -1177296 + AluSc SINE Alu 132 301 -8 2219 97 4 0 chr3 216859862 216860141 -1177017 + AluSx SINE Alu 1 280 -32 743 253 82 8 chr3 216860160 216860405 -1176753 + MLT1K LTR MaLR 326 588 0 411 320 8 16 chr3 216860741 216860869 -1176289 + MIR SINE MIR 20 146 -62 389 198 10 69 chr3 216861732 216861833 -1175325 - L2 LINE L2 0 3313 3219 1815 181 66 3 chr3 216861846 216862194 -1174964 + MSTB LTR MaLR 1 370 -56 1956 126 51 3 chr3 216862204 216862497 -1174661 - AluSc SINE Alu -2 307 1 1401 183 78 6 chr3 216862498 216862832 -1174326 - L1MCb LINE L1 -4856 1189 832 1713 138 52 9 chr3 216862832 216863311 -1173847 + LTR29 LTR ERV1 1 613 -9 326 204 11 45 chr3 216863340 216863428 -1173730 - L1MCb LINE L1 -5293 752 668 1167 227 25 27 chr3 216863527 216864027 -1173131 + LTR48B LTR ERV1 137 644 0 2401 107 0 0 chr3 216864083 216864392 -1172766 - AluSx SINE Alu -3 309 1 476 99 0 14 chr3 216864392 216864463 -1172695 + MSTA LTR MaLR 359 428 0 487 146 136 0 chr3 216864464 216864567 -1172591 - L2 LINE L2 -98 3215 3099 963 173 32 11 chr3 216865256 216865441 -1171717 - MER5A DNA MER1_type 0 189 1 192 278 293 15 chr3 216866477 216866610 -1170548 + MIR3 SINE MIR 25 194 -14 2227 112 10 13 chr3 216867098 216867420 -1169738 + AluSx SINE Alu 1 321 0 485 261 31 15 chr3 216867420 216867550 -1169608 + MIR SINE MIR 20 151 -111 1916 148 7 10 chr3 216869353 216869656 -1167502 - AluJb SINE Alu -10 302 1 205 143 48 24 chr3 216870289 216870331 -1166827 + CT-rich Low_complexity Low_complexity 1 43 0 1183 202 0 9 chr3 216870331 216870549 -1166609 - AluJb SINE Alu -12 300 85 2107 108 11 7 chr3 216871168 216871466 -1165692 - AluSx SINE Alu 0 312 11 196 307 89 0 chr3 216872771 216872872 -1164286 - L2 LINE L2 -12 3301 3192 1802 132 0 11 chr3 216874772 216875052 -1162106 - AluSq SINE Alu -36 277 1 1069 222 60 27 chr3 216875053 216875552 -1161606 + L1MD1 LINE L1 4437 5038 -1108 2022 139 3 3 chr3 216875552 216875847 -1161311 - AluJb SINE Alu -17 295 1 1069 222 60 27 chr3 216875847 216875964 -1161194 + L1MD1 LINE L1 5038 5150 -996 327 327 9 9 chr3 216876082 216876189 -1160969 - MIR SINE MIR -69 139 33 5040 185 31 7 chr3 216876189 216876405 -1160753 + L1MD1 LINE L1 5150 5359 -883 1832 167 76 6 chr3 216876405 216876746 -1160412 + MLT1A1 LTR MaLR 1 365 0 5040 185 31 7 chr3 216876746 216877596 -1159562 + L1MD1 LINE L1 5359 6239 -3 434 286 32 8 chr3 216877813 216877939 -1159219 - MLT1K LTR MaLR -197 391 263 548 96 0 58 chr3 216878301 216878405 -1158753 + L1MDa LINE L1 764 861 -5679 2190 101 7 7 chr3 216878434 216878731 -1158427 + AluSp SINE Alu 1 297 -16 186 213 255 0 chr3 216878754 216878848 -1158310 + MIR3 SINE MIR 45 162 -46 * 223 357 24 0 chr3 216878845 216878929 -1158229 - MIR SINE MIR -85 123 38 308 94 19 0 chr3 216879356 216879409 -1157749 + (TCCA)n Simple_repeat Simple_repeat 3 56 0 251 332 82 67 chr3 216879421 216879737 -1157421 - L2 LINE L2 -32 3240 2920 1136 229 46 23 chr3 216879835 216880137 -1157021 - L1MB8 LINE L1 -89 6089 5781 411 73 0 0 chr3 216880137 216880192 -1156966 + (TA)n Simple_repeat Simple_repeat 2 56 0 2318 108 0 3 chr3 216880192 216880497 -1156661 - AluSx SINE Alu -8 304 1 1547 257 55 27 chr3 216880732 216881008 -1156150 - L1MC4a LINE L1 -1859 5949 5682 1709 115 0 0 chr3 216881008 216881234 -1155924 - AluSq SINE Alu -4 309 84 1547 257 55 27 chr3 216881234 216881483 -1155675 - L1MC4a LINE L1 -2126 5682 5409 870 226 4 63 chr3 216881486 216881725 -1155433 - MLT1J LTR MaLR -282 229 5 290 244 52 52 chr3 216882072 216882083 -1155075 - L1MB8 LINE L1 -394 5727 5717 1463 123 31 0 chr3 216882083 216882310 -1154848 - MER46A DNA MER2_type 0 236 3 290 244 52 52 chr3 216882310 216882470 -1154688 - L1MB8 LINE L1 -403 5718 5556 354 281 98 13 chr3 216882738 216882891 -1154267 + MIR3 SINE MIR 42 207 -1 253 368 52 7 chr3 216883130 216883285 -1153873 + L2 LINE L2 1517 1678 -1636 216 122 0 0 chr3 216883285 216883326 -1153832 + (CA)n Simple_repeat Simple_repeat 2 42 0 665 312 51 16 chr3 216883455 216883766 -1153392 - L2 LINE L2 -1 3312 2991 291 224 146 17 chr3 216883823 216884017 -1153141 - L2 LINE L2 -276 3037 2805 445 276 195 5 chr3 216884213 216884434 -1152724 + L2 LINE L2 1881 2143 -1171 239 288 240 0 chr3 216886914 216887039 -1150119 - L3 LINE CR1 -142 1435 1281 180 283 43 0 chr3 216887578 216887624 -1149534 + L2 LINE L2 3209 3256 -16 321 292 100 0 chr3 216887922 216888042 -1149116 + L2 LINE L2 3180 3311 -2 533 229 109 62 chr3 216888302 216888494 -1148664 + Charlie8 DNA MER1_type 1 201 -2216 228 344 56 28 chr3 216889212 216889392 -1147766 - L2 LINE L2 0 3272 3088 212 303 120 46 chr3 216890095 216890270 -1146888 - L2 LINE L2 -1229 2085 1898 227 210 48 16 chr3 216891389 216891451 -1145707 + CT-rich Low_complexity Low_complexity 2 65 0 207 0 0 0 chr3 216891918 216891941 -1145217 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 2154 110 0 10 chr3 216891941 216892231 -1144927 - AluSx SINE Alu -25 287 1 247 253 13 27 chr3 216892238 216892313 -1144845 + MIR SINE MIR 71 144 -118 605 290 16 6 chr3 216894162 216894345 -1142813 + MIR SINE MIR 28 212 -50 222 37 0 0 chr3 216895273 216895300 -1141858 + (TG)n Simple_repeat Simple_repeat 1 27 0 1099 97 7 0 chr3 216895300 216895444 -1141714 - AluSg/x SINE Alu -44 268 124 197 219 0 0 chr3 216895543 216895584 -1141574 - L2 LINE L2 0 3313 3273 216 173 0 77 chr3 216896427 216896479 -1140679 + (GGGTG)n Simple_repeat Simple_repeat 4 51 0 2078 118 0 0 chr3 216899950 216900229 -1136929 - AluSx SINE Alu -18 294 16 486 283 106 22 chr3 216901057 216901237 -1135921 - MIR3 SINE MIR -4 204 10 484 249 16 74 chr3 216903628 216903817 -1133341 + MER5B DNA MER1_type 1 178 0 28 0 0 0 chr3 216903872 216903900 -1133258 + AT_rich Low_complexity Low_complexity 1 28 0 2430 89 0 0 chr3 216904004 216904297 -1132861 - AluSc SINE Alu -16 293 1 42934 34 3 2 chr3 216905099 216911228 -1125930 - L1PA4 LINE L1 -3 6152 16 321 295 42 8 chr3 216911853 216911977 -1125181 - MIR SINE MIR -77 131 1 2221 117 10 0 chr3 216913049 216913348 -1123810 + AluSx SINE Alu 1 302 -10 233 279 81 0 chr3 216914102 216914188 -1122970 - L2 LINE L2 -257 3056 2964 459 271 132 32 chr3 216914191 216914225 -1122933 + MLT1J LTR MaLR 10 39 -472 2347 85 3 0 chr3 216914225 216914518 -1122640 + AluSx SINE Alu 1 294 -18 459 271 132 32 chr3 216914518 216914920 -1122238 + MLT1J LTR MaLR 39 511 0 402 230 97 34 chr3 216914958 216915117 -1122041 - MIR SINE MIR -64 144 30 2581 56 3 10 chr3 216915215 216915518 -1121640 - AluSp SINE Alu -12 301 1 2135 79 51 27 chr3 216915684 216915976 -1121182 - AluSq SINE Alu -14 299 1 470 94 0 0 chr3 216916580 216916644 -1120514 - AluJ/FLAM SINE Alu -238 74 11 1802 104 0 42 chr3 217116735 217116994 -920164 - AluSp SINE Alu -65 248 1 1375 177 67 4 chr3 217116995 217117300 -919858 - L1M3 LINE L1 -620 5799 5475 3372 211 23 32 chr3 217117313 217118337 -918821 - L1M3 LINE L1 -1028 5354 4206 * 10765 158 82 51 chr3 217118336 217119367 -917791 - L1M3 LINE L1 -3441 2941 1943 1674 136 0 66 chr3 217119367 217119688 -917470 - AluJb SINE Alu 0 301 1 10765 158 82 51 chr3 217119688 217120644 -916514 - L1M3 LINE L1 -4439 1943 1018 2420 71 0 0 chr3 217120644 217120941 -916217 - AluY SINE Alu -14 297 1 10765 158 82 51 chr3 217120941 217121001 -916157 - L1M3 LINE L1 -5364 1018 961 2165 115 6 16 chr3 217121001 217121314 -915844 - AluSg SINE Alu 0 310 1 10765 158 82 51 chr3 217121314 217122109 -915049 - L1M3 LINE L1 -5421 961 5 275 276 61 34 chr3 217122549 217122842 -914316 - AluYa5 SINE Alu 0 301 1 198 0 0 0 chr3 217122896 217122918 -914240 + (A)n Simple_repeat Simple_repeat 1 22 0 715 153 0 8 chr3 217123364 217123488 -913670 + FLAM_A SINE Alu 1 123 -10 564 231 73 39 chr3 217123778 217124012 -913146 + L1ME1 LINE L1 5924 6165 -1 * 1229 226 141 26 chr3 217123995 217124389 -912769 + L1MC4 LINE L1 7481 7947 -95 240 35 0 0 chr3 217124389 217124418 -912740 + (CA)n Simple_repeat Simple_repeat 2 30 0 1229 226 141 26 chr3 217124418 217124527 -912631 + L1MC4 LINE L1 7947 8042 0 2003 85 48 20 chr3 217124574 217124869 -912289 - AluY SINE Alu -8 303 1 337 89 0 18 chr3 217124887 217124943 -912215 + Alu SINE Alu 254 308 0 187 323 68 45 chr3 217125131 217125264 -911894 + MIR SINE MIR 65 200 -62 671 167 0 0 chr3 217125501 217125603 -911555 - AluS SINE Alu -211 102 1 613 205 48 33 chr3 217125702 217125912 -911246 - L1MC5 LINE L1 -26 7935 7723 31 0 0 0 chr3 217126410 217126441 -910717 + AT_rich Low_complexity Low_complexity 1 31 0 1478 175 14 3 chr3 217128038 217128324 -908834 + L1MB7 LINE L1 5887 6175 -9 225 248 116 62 chr3 217128350 217128479 -908679 + L1MC/D LINE L1 5405 5540 -2268 1225 197 71 0 chr3 217128550 217128845 -908313 - L1M4 LINE L1 -1007 5139 4824 990 211 86 43 chr3 217128841 217128931 -908227 - L1M4 LINE L1 -1655 4491 4406 * 1806 149 6 38 chr3 217128931 217129247 -907911 - AluJb SINE Alu -6 306 1 990 211 86 43 chr3 217129247 217129483 -907675 - L1M4 LINE L1 -1740 4406 4151 2591 76 20 0 chr3 217129539 217129893 -907265 - L1PB1 LINE L1 0 6151 5791 1279 209 69 0 chr3 217130534 217130840 -906318 - L1MC3 LINE L1 0 7785 7459 1919 108 60 0 chr3 217131084 217131352 -905806 + AluSx SINE Alu 16 299 -13 761 230 101 14 chr3 217134156 217134365 -902793 + MIR SINE MIR 36 262 0 24 53 0 0 chr3 217134426 217134464 -902694 + AT_rich Low_complexity Low_complexity 1 38 0 48 0 0 0 chr3 217134626 217134674 -902484 + AT_rich Low_complexity Low_complexity 1 48 0 1696 181 0 7 chr3 217135085 217135388 -901770 - AluJo SINE Alu -11 301 1 26 64 0 0 chr3 217135441 217135488 -901670 + AT_rich Low_complexity Low_complexity 1 47 0 1848 181 0 13 chr3 217136961 217137260 -899898 + AluJb SINE Alu 1 295 -17 410 318 10 10 chr3 217137294 217137486 -899672 - L1ME3A LINE L1 -219 5951 5760 1723 131 100 31 chr3 217137493 217137844 -899314 - THE1C LTR MaLR 0 375 1 270 263 70 0 chr3 217138587 217138694 -898464 - L1M2 LINE L1 -595 5575 5484 666 236 62 26 chr3 217138991 217139287 -897871 + L2 LINE L2 1827 2178 -1136 240 263 184 0 chr3 217139342 217139418 -897740 + L2 LINE L2 2434 2523 -791 251 272 78 10 chr3 217139418 217139521 -897637 - MLT1G1 LTR MaLR 0 549 440 498 269 93 16 chr3 217139566 217139748 -897410 - MLT1G1 LTR MaLR -199 396 201 320 284 2 18 chr3 217139783 217139900 -897258 - MLT1F LTR MaLR -457 85 1 1009 171 65 34 chr3 217140387 217140650 -896508 - Tigger6 DNA MER2_type 0 1597 1327 602 257 130 10 chr3 217140662 217140969 -896189 + L1M4 LINE L1 3083 3426 -2720 329 242 33 0 chr3 217140965 217141056 -896102 + L1M4 LINE L1 4101 4194 -1952 * 2871 6 0 0 chr3 217141056 217141367 -895791 + AluYa5 SINE Alu 1 311 0 351 0 0 0 chr3 217141372 217141411 -895747 + (TA)n Simple_repeat Simple_repeat 2 40 0 237 241 37 0 chr3 217141585 217141639 -895519 + MER5A DNA MER1_type 1 56 -133 355 113 129 0 chr3 217141640 217141702 -895456 - Tigger1 DNA MER2_type 0 2418 2349 992 119 0 158 chr3 217141865 217142067 -895091 - AluSg/x SINE Alu -29 283 114 225 0 0 0 chr3 217142779 217142804 -894354 + (TG)n Simple_repeat Simple_repeat 1 25 0 1153 157 32 16 chr3 217142834 217143019 -894139 + AluJo SINE Alu 89 276 -36 388 212 0 12 chr3 217143284 217143369 -893789 - MLT1G1 LTR MaLR -2 593 510 229 261 0 46 chr3 217143433 217143498 -893660 - MLT1G1 LTR MaLR -206 389 328 3524 157 16 4 chr3 217143610 217144730 -892428 - L1P5 LINE L1 -371 5780 4646 269 293 38 19 chr3 217144830 217144936 -892222 + MIR SINE MIR 57 164 -98 192 210 30 180 chr3 217145793 217145893 -891265 + MIR SINE MIR 60 144 -118 757 109 60 38 chr3 217146095 217146279 -890879 + AluYa5 SINE Alu 124 311 0 316 193 24 24 chr3 217146285 217146368 -890790 - L1M4 LINE L1 -1695 4451 4369 3040 227 48 12 chr3 217146372 217147213 -889945 - L1M4 LINE L1 -1845 4301 3431 195 162 0 54 chr3 217147383 217147457 -889701 + C-rich Low_complexity Low_complexity 2 71 0 206 317 109 10 chr3 217147737 217147838 -889320 - L3 LINE CR1 -27 1550 1440 1939 136 0 14 chr3 217148162 217148448 -888710 - AluSx SINE Alu -30 282 1 10725 124 18 30 chr3 217148843 217150623 -886535 + Tigger1 DNA MER2_type 660 2418 0 237 241 37 0 chr3 217150624 217150678 -886480 - MER5A DNA MER1_type -133 56 1 351 0 0 0 chr3 217150852 217150891 -886267 + (TA)n Simple_repeat Simple_repeat 2 40 0 2461 87 0 0 chr3 217150896 217151208 -885950 - AluSx SINE Alu 0 312 1 2190 80 35 3 chr3 217151869 217152155 -885003 - AluSp SINE Alu -18 295 1 2042 325 108 20 chr3 217152425 217153545 -883613 + L2 LINE L2 542 1759 -1555 946 194 6 6 chr3 217153608 217153773 -883385 + FAM SINE Alu 1 165 -10 2111 110 10 0 chr3 217153777 217154069 -883089 + AluY SINE Alu 3 297 -14 1144 216 104 11 chr3 217154107 217154375 -882783 - AluJo SINE Alu -9 293 1 21 57 0 0 chr3 217154377 217154412 -882746 + AT_rich Low_complexity Low_complexity 1 35 0 2504 245 178 30 chr3 217154461 217156328 -880830 - L1ME LINE L1 -343 5802 3658 300 283 21 55 chr3 217156333 217156478 -880680 - L1ME LINE L1 -2570 3559 3420 189 0 0 0 chr3 217156504 217156525 -880633 + (T)n Simple_repeat Simple_repeat 1 21 0 255 335 0 0 chr3 217157618 217157695 -879463 + Charlie8 DNA MER1_type 1349 1417 -1000 2145 109 3 26 chr3 217158057 217158369 -878789 - AluSx SINE Alu -5 307 3 660 167 0 0 chr3 217158568 217158670 -878488 + AluJb SINE Alu 3 104 -208 657 236 0 0 chr3 217159351 217159491 -877667 - FRAM SINE Alu -36 140 1 430 103 15 0 chr3 217160416 217160484 -876674 - L1MB7 LINE L1 -9 6175 6107 3775 188 41 8 chr3 217160505 217161278 -875880 - L1MB4 LINE L1 -6 6174 5376 390 327 78 7 chr3 217161740 217161893 -875265 - MLT1L LTR MaLR -369 246 83 375 316 72 7 chr3 217162884 217163036 -874122 - L1ME LINE L1 -3736 2393 2232 2363 65 10 16 chr3 217163338 217163648 -873510 - AluY SINE Alu -3 308 1 242 269 51 0 chr3 217163684 217163762 -873396 - MER20B DNA MER1_type -676 107 26 477 249 82 72 chr3 217163815 217164302 -872856 - L1MEd LINE L1 -4734 1576 1044 877 204 0 18 chr3 217164324 217164491 -872667 - FAM SINE Alu 0 49 1 226 112 0 90 chr3 217164500 217164589 -872569 + (CTTAT)n Simple_repeat Simple_repeat 2 82 0 1013 241 112 20 chr3 217164624 217165163 -871995 + L1M4 LINE L1 2161 5098 -1048 1317 222 94 3 chr3 217165177 217165454 -871704 + L1ME2 LINE L1 4871 5121 -1041 1630 177 13 42 chr3 217165454 217165765 -871393 + AluJo SINE Alu 2 303 -9 1317 222 94 3 chr3 217165765 217165999 -871159 + L1ME2 LINE L1 5121 5440 -722 369 169 91 0 chr3 217166027 217166104 -871054 + L1ME1 LINE L1 6034 6117 -49 1710 279 107 2 chr3 217166142 217166786 -870372 + L1ME2 LINE L1 5426 6137 -27 358 256 26 0 chr3 217167042 217167120 -870038 - MER81 DNA DNA -7 107 28 4464 233 61 35 chr3 217167283 217168975 -868183 + L1MB7 LINE L1 532 2448 -4196 1158 200 20 66 chr3 217168975 217169280 -867878 - AluJo SINE Alu -10 292 2 4464 233 61 35 chr3 217169280 217169743 -867415 + L1MB7 LINE L1 2448 2897 -3747 3266 223 50 13 chr3 217169804 217170676 -866482 + L1MB7 LINE L1 3895 4799 -1845 1595 182 43 93 chr3 217170685 217170768 -866390 + L1MB7 LINE L1 6204 6290 -392 2215 97 0 28 chr3 217170768 217171088 -866070 - AluY SINE Alu 0 311 1 1595 182 43 93 chr3 217171088 217171488 -865670 + L1MB7 LINE L1 6290 6663 -19 211 317 109 10 chr3 217171516 217171617 -865541 - L3 LINE CR1 -27 1550 1440 1907 140 0 14 chr3 217171941 217172227 -864931 - AluSx SINE Alu -30 282 1 2140 122 3 3 chr3 217173639 217173951 -863207 - AluSp SINE Alu -1 312 1 1946 83 87 0 chr3 217175476 217175752 -861406 - AluSq SINE Alu -13 300 1 1273 126 176 42 chr3 217176295 217176557 -860601 + AluJo SINE Alu 2 298 -4 2445 47 0 13 chr3 217176662 217176963 -860195 + AluY SINE Alu 1 297 -14 387 331 43 31 chr3 217176990 217177153 -860005 - MIR SINE MIR -28 234 70 235 215 43 65 chr3 217177176 217177269 -859889 - MER34 LTR ERV1 -2 540 450 480 193 17 8 chr3 217178280 217178467 -858691 - MER8 DNA MER2_type 0 239 8 1413 191 7 18 chr3 217179018 217179295 -857863 + AluJb SINE Alu 33 306 -6 1648 182 11 0 chr3 217179519 217179788 -857370 + AluSx SINE Alu 1 272 -40 538 166 80 68 chr3 217180249 217180412 -856746 - MER63 DNA MER1_type -22 1038 874 2418 76 0 16 chr3 217180471 217180785 -856373 + AluSg SINE Alu 1 309 -1 3261 229 227 13 chr3 217182011 217183204 -853954 + L1MC4 LINE L1 6460 7907 -135 1541 251 90 20 chr3 217184016 217184563 -852595 - MLT1H1 LTR MaLR 0 555 2 347 168 107 92 chr3 217184766 217184897 -852261 + L1MC4a LINE L1 5807 5939 -1869 2131 103 31 0 chr3 217184901 217185192 -851966 + AluSc SINE Alu 1 300 -9 200 308 0 33 chr3 217185207 217185298 -851860 + (TATATG)n Simple_repeat Simple_repeat 2 89 0 1581 185 13 20 chr3 217185546 217185849 -851309 + AluJo SINE Alu 1 301 -11 236 310 26 26 chr3 217186029 217186145 -851013 + L1MC4a LINE L1 6476 6591 -1217 30 27 0 0 chr3 217186696 217186733 -850425 + AT_rich Low_complexity Low_complexity 1 37 0 24 53 0 0 chr3 217186774 217186812 -850346 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr3 217187146 217187174 -849984 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr3 217187604 217187633 -849525 + AT_rich Low_complexity Low_complexity 1 29 0 1292 274 108 51 chr3 217188769 217188794 -848364 - HAL1 LINE L1 -2 2505 2483 1949 155 3 0 chr3 217188794 217189103 -848055 - AluSx SINE Alu -2 310 1 1292 274 108 51 chr3 217189103 217189916 -847242 - HAL1 LINE L1 -24 2483 1619 648 198 0 0 chr3 217190826 217190942 -846216 - FLAM_A SINE Alu -19 123 8 1852 164 119 5 chr3 217192838 217193197 -843961 + L1MA9 LINE L1 5835 6244 -68 182 37 37 0 chr3 217193197 217193224 -843934 + (TA)n Simple_repeat Simple_repeat 1 28 0 1852 164 119 5 chr3 217193224 217193260 -843898 + L1MA9 LINE L1 6244 6275 -37 1909 135 0 3 chr3 217193261 217193543 -843615 + AluSx SINE Alu 1 281 -31 233 160 20 0 chr3 217193545 217193595 -843563 + (TA)n Simple_repeat Simple_repeat 2 52 0 2323 93 0 0 chr3 217193739 217194041 -843117 + AluSg SINE Alu 1 302 -8 186 43 0 0 chr3 217194339 217194362 -842796 + (TAGG)n Simple_repeat Simple_repeat 1 23 0 1408 160 20 75 chr3 217194367 217194673 -842485 - AluJo SINE Alu -23 289 1 22 56 0 0 chr3 217195115 217195151 -842007 + AT_rich Low_complexity Low_complexity 1 36 0 2201 94 0 24 chr3 217195957 217196254 -840904 - AluSg SINE Alu -15 295 6 370 217 33 69 chr3 217196724 217196863 -840295 - L1MC4 LINE L1 0 8042 7880 2155 111 0 16 chr3 217197587 217197903 -839255 + AluSx SINE Alu 1 311 -1 1186 152 0 0 chr3 217197903 217198081 -839077 + AluJb SINE Alu 134 311 -1 1836 160 0 23 chr3 217200012 217200319 -836839 - AluJo SINE Alu -12 300 1 210 118 0 0 chr3 217201084 217201118 -836040 + (TA)n Simple_repeat Simple_repeat 2 35 0 22 56 0 0 chr3 217202791 217202827 -834331 + AT_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr3 217202881 217202913 -834245 + AT_rich Low_complexity Low_complexity 1 32 0 207 0 0 0 chr3 217203008 217203031 -834127 + (T)n Simple_repeat Simple_repeat 1 23 0 258 267 0 17 chr3 217203167 217203227 -833931 + L2 LINE L2 3213 3271 -1 2079 93 0 14 chr3 217205352 217205632 -831526 + AluSx SINE Alu 1 276 -36 231 61 0 0 chr3 217205635 217205668 -831490 + (T)n Simple_repeat Simple_repeat 1 33 0 879 245 167 28 chr3 217205990 217206313 -830845 + L1ME4a LINE L1 5539 5906 -215 1404 244 37 13 chr3 217206330 217206711 -830447 - L1ME LINE L1 -440 5730 5341 209 333 0 0 chr3 217206754 217206811 -830347 - MER5A DNA MER1_type -124 65 9 282 240 7 82 chr3 217206979 217207125 -830033 - L1MC5 LINE L1 -44 7917 7783 309 277 94 49 chr3 217207231 217207455 -829703 + L1ME4a LINE L1 5636 5869 -252 1818 154 10 16 chr3 217207477 217207783 -829375 + AluSx SINE Alu 1 304 -8 1421 167 9 76 chr3 217207793 217208123 -829035 + AluJo SINE Alu 1 308 -4 27 0 0 0 chr3 217208149 217208176 -828982 + AT_rich Low_complexity Low_complexity 1 27 0 38 0 0 0 chr3 217209310 217209348 -827810 + AT_rich Low_complexity Low_complexity 1 38 0 180 0 0 0 chr3 217209361 217209381 -827777 + (TATATG)n Simple_repeat Simple_repeat 4 23 0 2420 79 3 0 chr3 217210492 217210797 -826361 + AluSp SINE Alu 1 306 -7 21 0 0 0 chr3 217211030 217211051 -826107 + AT_rich Low_complexity Low_complexity 1 21 0 35 41 0 0 chr3 217211109 217211158 -826000 + AT_rich Low_complexity Low_complexity 1 49 0 907 201 0 12 chr3 217213378 217213547 -823611 + FRAM SINE Alu 1 167 -9 4667 214 104 68 chr3 217213622 217213856 -823302 + L1MC4 LINE L1 5177 5401 -2641 2207 104 3 0 chr3 217213856 217214153 -823005 + AluSq SINE Alu 1 298 -15 1766 124 35 0 chr3 217214162 217214420 -822738 + AluSx SINE Alu 34 300 -12 4667 214 104 68 chr3 217214420 217215920 -821238 + L1MC4 LINE L1 5408 7210 -832 1903 148 83 3 chr3 217215920 217216259 -820899 + MER47A DNA MER2_type 1 366 0 4667 214 104 68 chr3 217216259 217217034 -820124 + L1MC4 LINE L1 7210 7956 -86 22 0 0 0 chr3 217217153 217217175 -819983 + AT_rich Low_complexity Low_complexity 1 22 0 1820 143 79 0 chr3 217217245 217217525 -819633 + AluSx SINE Alu 1 302 -10 782 135 0 38 chr3 217217915 217218048 -819110 + FLAM_C SINE Alu 1 128 -5 329 178 69 79 chr3 217218512 217218613 -818545 + MIR SINE MIR 93 192 -70 244 192 0 39 chr3 217218685 217218737 -818421 + MER3 DNA MER1_type 160 209 0 1287 257 132 49 chr3 217218911 217219124 -818034 + L1M4 LINE L1 2157 2351 -3795 2426 61 3 0 chr3 217219124 217219417 -817741 + AluY SINE Alu 1 294 -17 1287 257 132 49 chr3 217219417 217220069 -817089 + L1M4 LINE L1 2351 3130 -3016 1736 186 3 3 chr3 217220069 217220370 -816788 + AluJb SINE Alu 1 301 -11 1287 257 132 49 chr3 217220370 217220576 -816582 + L1M4 LINE L1 3130 3318 -2828 1529 239 119 58 chr3 217220617 217220968 -816190 + L1ME3A LINE L1 5319 5647 -523 1631 182 0 23 chr3 217220968 217221270 -815888 + AluJo SINE Alu 2 296 -16 1529 239 119 58 chr3 217221270 217221694 -815464 + L1ME3A LINE L1 5647 6167 -3 559 310 123 11 chr3 217221712 217222086 -815072 + L1M4 LINE L1 3437 3852 -2294 7324 150 76 96 chr3 217222098 217223100 -814058 + L1M4 LINE L1 29 1049 -5335 1747 184 3 16 chr3 217223100 217223236 -813922 + AluJb SINE Alu 1 137 -175 2248 109 3 0 chr3 217223236 217223539 -813619 + AluSq SINE Alu 1 304 -9 1747 184 3 16 chr3 217223539 217223718 -813440 + AluJb SINE Alu 137 312 0 7324 150 76 96 chr3 217223718 217224235 -812923 + L1M4 LINE L1 1049 1575 -4809 1651 167 6 42 chr3 217224235 217224547 -812611 - AluJb SINE Alu -10 302 2 2207 102 3 7 chr3 217224557 217224862 -812296 - AluSx SINE Alu -8 304 1 7324 150 76 96 chr3 217224862 217225111 -812047 + L1M4 LINE L1 1584 1774 -4610 265 227 125 0 chr3 217225110 217225198 -811960 + L1M4 LINE L1 4243 4341 -2041 * 539 196 107 62 chr3 217225177 217225402 -811756 - L1MC5 LINE L1 -86 7875 7641 486 223 83 52 chr3 217225842 217226035 -811123 - L1ME3A LINE L1 -10 6160 5962 1090 230 145 34 chr3 217226039 217226426 -810732 - L1ME1 LINE L1 -15 6151 5722 1991 129 10 10 chr3 217227364 217227673 -809485 - AluSc SINE Alu 0 309 1 1319 266 115 53 chr3 217227680 217228486 -808672 - HAL1 LINE L1 -33 2474 1619 667 198 0 0 chr3 217229396 217229512 -807646 - FLAM_A SINE Alu -19 123 8 1797 168 91 13 chr3 217231406 217231780 -805378 + L1MA9 LINE L1 5835 6237 -75 1095 141 0 6 chr3 217231909 217232079 -805079 + AluSg/x SINE Alu 142 310 0 921 203 117 78 chr3 217232243 217232765 -804393 + L1MC5 LINE L1 7334 7875 -86 259 217 43 0 chr3 217232763 217232832 -804326 - L1M4 LINE L1 -2068 4314 4243 * 1260 173 36 40 chr3 217232831 217233079 -804079 - L1M4 LINE L1 -4610 1774 1528 2237 96 0 0 chr3 217233079 217233396 -803762 + AluSx SINE Alu 1 317 0 180 0 0 0 chr3 217235233 217235253 -801905 + (TA)n Simple_repeat Simple_repeat 2 21 0 1663 176 7 7 chr3 217235253 217235542 -801616 - AluJb SINE Alu -23 289 1 1411 334 50 17 chr3 217235626 217236493 -800665 - L2 LINE L2 -70 3243 2342 1451 112 4 52 chr3 217236513 217236763 -800395 - AluSg/x SINE Alu -6 304 67 861 244 99 73 chr3 217236970 217237416 -799742 + MER52A LTR ERV1 275 1459 -138 433 291 32 19 chr3 217237430 217237588 -799570 + MER52A LTR ERV1 1596 1755 0 380 254 48 0 chr3 217237810 217237936 -799222 + L1MC4 LINE L1 6931 7062 -980 329 229 0 0 chr3 217238023 217238093 -799065 - MER94 DNA DNA -54 80 11 24 0 0 0 chr3 217238508 217238532 -798626 + AT_rich Low_complexity Low_complexity 1 24 0 317 236 142 0 chr3 217239080 217239186 -797972 - L2 LINE L2 -4 3309 3189 28 92 0 0 chr3 217239192 217239257 -797901 + AT_rich Low_complexity Low_complexity 1 65 0 21 0 0 0 chr3 217241168 217241189 -795969 + AT_rich Low_complexity Low_complexity 1 21 0 2329 58 0 4 chr3 217242181 217242459 -794699 - AluY SINE Alu -34 277 1 249 257 71 53 chr3 217242463 217242576 -794582 - L2 LINE L2 -540 2774 2660 29 28 0 0 chr3 217243143 217243179 -793979 + GC_rich Low_complexity Low_complexity 1 36 0 23 78 0 0 chr3 217243497 217243548 -793610 + AT_rich Low_complexity Low_complexity 1 51 0 240 59 0 0 chr3 217243598 217243632 -793526 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 24 32 0 0 chr3 217244937 217244968 -792190 + AT_rich Low_complexity Low_complexity 1 31 0 260 342 18 36 chr3 217245120 217245231 -791927 - MIR3 SINE MIR -49 159 51 1375 177 35 11 chr3 217247708 217247968 -789190 + AluJo SINE Alu 28 293 -19 2268 73 21 0 chr3 217247985 217248271 -788887 - AluSg SINE Alu -18 292 1 197 255 186 29 chr3 217248440 217248542 -788616 + L2 LINE L2 3152 3269 -3 673 91 182 9 chr3 217250505 217250615 -786543 - AluJb SINE Alu -176 136 8 536 169 89 16 chr3 217250789 217250913 -786245 + FLAM_A SINE Alu 1 133 0 7242 85 24 3 chr3 217250961 217251910 -785248 + LTR5 LTR ERVK 1 969 0 1421 170 10 74 chr3 217252038 217252204 -784954 - AluJo SINE Alu -20 292 154 2206 117 3 3 chr3 217252204 217252511 -784647 - AluSc SINE Alu -2 307 1 1421 170 10 74 chr3 217252511 217252656 -784502 - AluJo SINE Alu -158 154 1 2170 113 20 0 chr3 217252854 217253146 -784012 - AluSg SINE Alu -12 298 1 260 330 88 11 chr3 217253408 217253590 -783568 - MIR3 SINE MIR -8 200 5 879 121 46 0 chr3 217255713 217255954 -781204 + CT-rich Low_complexity Low_complexity 1 252 0 286 100 0 0 chr3 217255968 217256008 -781150 - AluJ/FRAM SINE Alu -34 268 229 582 208 0 0 chr3 217256008 217256114 -781044 - AluJo/FLAM SINE Alu -205 107 2 995 247 245 12 chr3 217256160 217256573 -780585 + MLT1E2 LTR MaLR 108 616 -10 2113 119 3 0 chr3 217256878 217257171 -779987 - AluSx SINE Alu -18 294 1 892 226 107 62 chr3 217257575 217257631 -779527 + MLT1J LTR MaLR 1 53 -458 2356 103 0 3 chr3 217257631 217257932 -779226 - AluSx SINE Alu -12 300 1 892 226 107 62 chr3 217257932 217258184 -778974 + MLT1J LTR MaLR 53 323 -188 266 281 61 18 chr3 217259039 217259153 -778005 - MIR SINE MIR -27 235 117 2290 136 38 146 chr3 217259201 217259320 -777838 + MLT2B1 LTR ERVL 3 133 -387 2333 103 0 0 chr3 217259320 217259622 -777536 - AluSg SINE Alu -8 302 1 2290 136 38 146 chr3 217259622 217260083 -777075 + MLT2B1 LTR ERVL 133 520 0 1626 161 44 7 chr3 217260615 217260888 -776270 + AluJo SINE Alu 11 293 -19 1883 157 0 7 chr3 217260888 217261173 -775985 + AluSx SINE Alu 1 284 -28 434 106 80 0 chr3 217261186 217261277 -775881 - L1MA4A LINE L1 -166 6134 6034 407 284 77 35 chr3 217261299 217261817 -775341 - L1MDa LINE L1 -2847 3693 3198 1935 163 0 0 chr3 217261817 217262112 -775046 - AluJo SINE Alu -17 295 1 407 284 77 35 chr3 217262112 217262450 -774708 - L1MDa LINE L1 -3342 3198 2665 2323 97 7 7 chr3 217262455 217262765 -774393 - AluSx SINE Alu -2 310 1 316 228 140 9 chr3 217262766 217262880 -774278 - L1MDa LINE L1 -3995 2545 2417 27 0 0 0 chr3 217262939 217262966 -774192 + AT_rich Low_complexity Low_complexity 1 27 0 2134 93 42 104 chr3 217263099 217263484 -773674 - THE1B LTR MaLR -3 361 1 1425 267 54 66 chr3 217263486 217264058 -773100 - L1MDa LINE L1 -5007 1523 946 312 27 0 0 chr3 217264058 217264095 -773063 + (TG)n Simple_repeat Simple_repeat 2 38 0 1425 267 54 66 chr3 217264095 217264258 -772900 - L1MDa LINE L1 -5584 946 797 2458 91 3 0 chr3 217264258 217264567 -772591 - AluSg SINE Alu 0 310 1 1425 267 54 66 chr3 217264567 217264683 -772475 - L1MDa LINE L1 -5733 797 681 246 247 32 120 chr3 217265117 217265236 -771922 - L1ME4a LINE L1 0 6121 6018 2358 84 6 0 chr3 217265236 217265547 -771611 + AluSq SINE Alu 1 313 0 246 247 32 120 chr3 217265547 217265585 -771573 - L1ME4a LINE L1 -103 6018 5978 2104 123 10 0 chr3 217267277 217267656 -769502 + AluSx SINE Alu 1 382 0 340 261 57 34 chr3 217267656 217267832 -769326 + L1MEc LINE L1 1576 1755 -4641 379 306 49 0 chr3 217268147 217268291 -768867 + LTR67 LTR ERVL 359 509 -48 770 150 8 8 chr3 217268354 217268481 -768677 + FLAM_A SINE Alu 1 127 -6 3626 165 56 15 chr3 217268663 217268932 -768226 - L1MB7 LINE L1 0 6184 5927 3966 178 22 62 chr3 217268932 217269942 -767216 + LTR5 LTR ERVK 1 969 0 3626 165 56 15 chr3 217269942 217270407 -766751 - L1MB7 LINE L1 -257 5927 5420 558 221 188 0 chr3 217270413 217270562 -766596 - MLT1L LTR MaLR -313 302 126 223 257 267 21 chr3 217270650 217270837 -766321 + L2 LINE L2 2008 2240 -1074 2328 70 3 0 chr3 217270906 217271240 -765918 - AluY SINE Alu 0 311 1 2263 70 3 0 chr3 217271251 217271550 -765608 - AluSx SINE Alu -12 300 1 238 294 50 8 chr3 217271550 217271669 -765489 + L1ME4a LINE L1 5998 6121 0 1401 265 57 69 chr3 217272103 217272219 -764939 + L1MEd LINE L1 681 797 -5733 2368 84 3 0 chr3 217272219 217272528 -764630 + AluSg SINE Alu 1 310 0 1401 265 57 69 chr3 217272528 217272691 -764467 + L1MEd LINE L1 797 960 -5570 312 27 0 0 chr3 217272691 217272728 -764430 + (CA)n Simple_repeat Simple_repeat 2 38 0 1401 265 57 69 chr3 217272728 217273300 -763858 + L1MEd LINE L1 960 1523 -5007 2137 93 42 104 chr3 217273302 217273687 -763471 + THE1B LTR MaLR 1 361 -3 27 0 0 0 chr3 217273820 217273847 -763311 + AT_rich Low_complexity Low_complexity 1 27 0 380 226 104 9 chr3 217273914 217274020 -763138 + L1MEd LINE L1 2430 2545 -3995 2196 97 7 7 chr3 217274021 217274331 -762827 + AluSx SINE Alu 1 310 -2 741 282 77 35 chr3 217274336 217274674 -762484 + L1MEd LINE L1 2665 2987 -3553 1834 159 0 0 chr3 217274674 217274969 -762189 + AluJo SINE Alu 1 295 -17 741 282 77 35 chr3 217274969 217275487 -761671 + L1MEd LINE L1 2987 3693 -2847 428 106 80 0 chr3 217275509 217275600 -761558 + L1MA4A LINE L1 6034 6134 -166 1789 154 0 7 chr3 217275613 217275899 -761259 - AluSx SINE Alu -28 284 1 1514 169 40 4 chr3 217275899 217276171 -760987 - AluJo SINE Alu -19 293 11 2332 198 22 72 chr3 217276703 217277164 -759994 - MLT2B3 LTR ERVL 0 554 126 2208 103 0 0 chr3 217277164 217277466 -759692 + AluSg SINE Alu 1 302 -8 2332 198 22 72 chr3 217277466 217277585 -759573 - MLT2B3 LTR ERVL -428 126 3 331 301 105 13 chr3 217277616 217277769 -759389 + MIR SINE MIR 96 262 0 896 226 107 62 chr3 217278602 217278854 -758304 - MLT1J LTR MaLR -188 323 53 2224 103 0 3 chr3 217278854 217279155 -758003 + AluSx SINE Alu 1 300 -12 896 226 107 62 chr3 217279155 217279211 -757947 - MLT1J LTR MaLR -458 53 1 1991 119 3 0 chr3 217279615 217279908 -757250 + AluSx SINE Alu 1 294 -18 1020 247 245 12 chr3 217280213 217280626 -756532 - MLT1E2 LTR MaLR -10 616 108 587 208 0 0 chr3 217280672 217280778 -756380 + AluJo/FLAM SINE Alu 2 107 -205 292 100 0 0 chr3 217280778 217280818 -756340 + AluJ/FRAM SINE Alu 229 268 -34 741 130 43 0 chr3 217280832 217280993 -756165 + GA-rich Low_complexity Low_complexity 2 169 0 331 335 88 11 chr3 217283116 217283298 -753860 + MIR3 SINE MIR 5 200 -8 2075 109 20 0 chr3 217283560 217283853 -753305 + AluSg SINE Alu 1 299 -11 1319 170 10 71 chr3 217284050 217284194 -752964 + AluJo SINE Alu 1 117 -195 2232 92 3 3 chr3 217284194 217284499 -752659 + AluSc SINE Alu 1 305 -4 1319 170 10 71 chr3 217284499 217284665 -752493 + AluJo SINE Alu 117 292 -20 6909 84 24 3 chr3 217284793 217285742 -751416 - LTR5 LTR ERVK 0 969 1 541 169 89 16 chr3 217285792 217285916 -751242 - FLAM_A SINE Alu 0 133 1 197 257 229 0 chr3 217285999 217286069 -751089 + MIR SINE MIR 17 102 -160 679 91 182 9 chr3 217286090 217286200 -750958 + AluJb SINE Alu 8 136 -176 236 254 158 61 chr3 217288166 217288280 -748878 - L2 LINE L2 -3 3269 3145 2140 73 21 0 chr3 217288437 217288723 -748435 + AluSg SINE Alu 1 292 -18 1497 147 35 8 chr3 217288740 217288999 -748159 - AluJo SINE Alu -19 293 28 2181 93 0 23 chr3 217289443 217289745 -747413 - AluSq SINE Alu -18 295 1 22 35 0 0 chr3 217290964 217290993 -746165 + AT_rich Low_complexity Low_complexity 1 29 0 677 238 53 0 chr3 217291037 217291188 -745970 + FRAM SINE Alu 1 158 -18 239 250 34 23 chr3 217291413 217291501 -745657 - HAL1 LINE L1 -1596 911 823 836 123 0 0 chr3 217293251 217293373 -743785 + FLAM_C SINE Alu 1 122 -21 2206 92 0 3 chr3 217295925 217296219 -740939 + AluSx SINE Alu 1 293 -19 2260 94 7 0 chr3 217296511 217296818 -740340 + AluSx SINE Alu 1 309 -3 1129 130 83 26 chr3 217299102 217299294 -737864 - MER1B DNA MER1_type 0 339 137 21 0 0 0 chr3 217299811 217299832 -737326 + AT_rich Low_complexity Low_complexity 1 21 0 1487 120 132 11 chr3 217300646 217300912 -736246 - AluJo SINE Alu -14 298 1 389 233 74 106 chr3 217301194 217301383 -735775 + MIR SINE MIR 36 218 -44 1153 140 0 0 chr3 217302163 217302334 -734824 - FRAM SINE Alu -8 168 1 1245 80 0 0 chr3 217302897 217303059 -734099 - AluSc SINE Alu -147 162 1 238 253 152 20 chr3 217303127 217303226 -733932 - L2 LINE L2 -14 3299 3188 23 54 0 0 chr3 217304027 217304064 -733094 + AT_rich Low_complexity Low_complexity 1 37 0 712 276 85 55 chr3 217304293 217305135 -732023 - L1MC4a LINE L1 -379 5783 5006 430 265 87 87 chr3 217305137 217305424 -731734 - L1MC4a LINE L1 -1672 4474 4188 319 290 54 0 chr3 217305933 217306026 -731132 - MIR SINE MIR -160 102 5 1795 128 7 18 chr3 217306209 217306345 -730813 + AluJo SINE Alu 1 137 -175 1616 159 23 10 chr3 217306345 217306646 -730512 + AluJb SINE Alu 1 305 -7 1795 128 7 18 chr3 217306646 217306790 -730368 + AluJo SINE Alu 137 278 -34 193 313 0 0 chr3 217306818 217306866 -730292 + MIR SINE MIR 13 60 -202 821 298 37 4 chr3 217306888 217307130 -730028 + MIR SINE MIR 13 262 0 199 184 122 49 chr3 217307487 217307565 -729593 + MIR SINE MIR 67 150 -58 1790 153 30 13 chr3 217307856 217308211 -728947 + Tigger4(Zombi) DNA MER2_type 1 2731 0 324 223 162 100 chr3 217308241 217308487 -728671 + MLT1I LTR MaLR 12 262 -147 2667 223 103 20 chr3 217308492 217309424 -727734 + L1M4 LINE L1 3870 4899 -1247 2102 103 3 0 chr3 217309456 217309748 -727410 - AluSp SINE Alu -18 295 3 1846 170 0 0 chr3 217309757 217310063 -727095 - AluSx SINE Alu -6 306 1 238 225 0 62 chr3 217310065 217310145 -727013 - L1P LINE L1 -3565 2581 2507 6984 133 67 31 chr3 217310192 217310259 -726899 - L1 LINE L1 -3629 3936 3873 204 40 0 0 chr3 217310259 217310284 -726874 + (TAGA)n Simple_repeat Simple_repeat 2 26 0 6984 133 67 31 chr3 217310284 217310927 -726231 - L1 LINE L1 -3692 3873 3255 2272 72 16 3 chr3 217310927 217311234 -725924 - AluY SINE Alu 0 311 1 6984 133 67 31 chr3 217311234 217312096 -725062 - L1 LINE L1 -4310 3255 2305 1978 131 3 13 chr3 217312097 217312410 -724748 - AluSx SINE Alu -2 310 1 242 241 32 120 chr3 217312960 217313079 -724079 - L1ME4a LINE L1 0 6121 6018 2237 84 6 0 chr3 217313079 217313390 -723768 + AluSq SINE Alu 1 313 0 242 241 32 120 chr3 217313390 217313428 -723730 - L1ME4a LINE L1 -103 6018 5978 2104 123 10 0 chr3 217315120 217315499 -721659 + AluSx SINE Alu 1 382 0 340 261 57 34 chr3 217315499 217315675 -721483 + L1MEc LINE L1 1576 1755 -4641 379 306 49 0 chr3 217315990 217316134 -721024 + LTR67 LTR ERVL 359 509 -48 791 150 8 8 chr3 217316197 217316324 -720834 + FLAM_A SINE Alu 1 127 -6 3636 165 56 15 chr3 217316506 217316775 -720383 - L1MB7 LINE L1 0 6184 5927 4461 178 22 62 chr3 217316775 217317785 -719373 + LTR5 LTR ERVK 1 969 0 3636 165 56 15 chr3 217317785 217318250 -718908 - L1MB7 LINE L1 -257 5927 5420 511 226 90 8 chr3 217318256 217318389 -718769 - MLT1L LTR MaLR -313 302 159 223 257 267 21 chr3 217318493 217318680 -718478 + L2 LINE L2 2008 2240 -1074 2472 70 3 0 chr3 217318749 217319083 -718075 - AluY SINE Alu 0 311 1 2248 102 10 0 chr3 217319094 217319389 -717769 - AluSg SINE Alu -12 298 1 811 158 0 0 chr3 217319474 217319594 -717564 - AluSg/x SINE Alu -15 295 176 273 291 154 8 chr3 217319601 217319718 -717440 - MIR SINE MIR -107 155 22 1819 167 61 19 chr3 217319869 217320229 -716929 - THE1C LTR MaLR 0 375 1 181 261 35 63 chr3 217320648 217320790 -716368 + L2 LINE L2 2710 2847 -467 425 266 169 34 chr3 217320913 217321090 -716068 + MIR SINE MIR 6 206 -56 29 78 0 0 chr3 217323569 217323633 -713525 + GC_rich Low_complexity Low_complexity 1 64 0 24 0 0 0 chr3 217324266 217324290 -712868 + GC_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 217324757 217324778 -712380 + GC_rich Low_complexity Low_complexity 1 21 0 1040 118 31 0 chr3 217325016 217325177 -711981 - FRAM SINE Alu -11 165 1 775 260 51 73 chr3 217325177 217325452 -711706 - L1ME1 LINE L1 -56 6108 5844 4008 205 57 12 chr3 217325452 217326312 -710846 + MER54A LTR ERVL 1 899 -2 775 260 51 73 chr3 217326312 217326418 -710740 - L1ME1 LINE L1 -320 5844 5737 671 228 37 75 chr3 217326476 217326644 -710514 - L1ME1 LINE L1 -413 5753 5580 201 39 0 0 chr3 217326644 217326670 -710488 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 2197 91 0 3 chr3 217326670 217326955 -710203 - AluY SINE Alu -25 286 3 2370 97 3 0 chr3 217326957 217327257 -709901 - AluSg SINE Alu -8 302 2 671 228 37 75 chr3 217327257 217327325 -709833 - L1ME1 LINE L1 -586 5580 5522 1885 159 0 44 chr3 217327342 217327662 -709496 - AluJo SINE Alu -2 310 5 711 197 140 100 chr3 217327662 217327887 -709271 - L1ME1 LINE L1 -938 5208 4993 279 0 0 0 chr3 217327887 217327918 -709240 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 711 197 140 100 chr3 217327918 217327934 -709224 - L1ME1 LINE L1 -1153 4993 4979 5904 49 110 3 chr3 217327934 217329081 -708077 + SVA Other Other 2 1386 0 2290 89 0 0 chr3 217329081 217329362 -707796 - AluSx SINE Alu -31 281 1 711 197 140 100 chr3 217329362 217329456 -707702 - L1ME1 LINE L1 -1166 4980 4853 182 289 103 65 chr3 217329625 217329888 -707270 - L2 LINE L2 -430 2884 2612 843 182 0 0 chr3 217329916 217330048 -707110 - FLAM_C SINE Alu -1 132 1 261 294 20 20 chr3 217330236 217330338 -706820 - MER5B DNA MER1_type -76 102 1 304 313 109 27 chr3 217330367 217330623 -706535 - L2 LINE L2 -877 2437 2161 2555 72 0 3 chr3 217331009 217331316 -705842 - AluSx SINE Alu -6 306 1 396 258 47 31 chr3 217331772 217331900 -705258 + MIR3 SINE MIR 15 144 -64 1867 141 74 0 chr3 217332444 217332728 -704430 - AluSx SINE Alu -5 307 3 2179 117 0 0 chr3 217332790 217333089 -704069 - AluJb SINE Alu -13 299 1 554 236 55 33 chr3 217333231 217333413 -703745 + MIR SINE MIR 17 202 -60 250 256 0 24 chr3 217333632 217333714 -703444 - MER116 DNA Mariner 0 80 1 2407 94 3 0 chr3 217333963 217334272 -702886 + AluSx SINE Alu 1 310 -2 1951 114 44 0 chr3 217334842 217335147 -702011 - AluSx SINE Alu 0 317 1 480 304 54 62 chr3 217335176 217335609 -701549 + L1M4 LINE L1 3809 4244 -1902 4735 149 32 24 chr3 217335609 217335828 -701330 + L1MC1 LINE L1 5473 5689 -644 2577 52 0 0 chr3 217335828 217336119 -701039 + AluY SINE Alu 1 291 -20 4735 149 32 24 chr3 217336119 217336744 -700414 + L1MC1 LINE L1 5689 6324 -9 2230 89 4 0 chr3 217336744 217337061 -700097 + AluSx SINE Alu 1 318 0 480 304 54 62 chr3 217337061 217337121 -700037 + L1M4 LINE L1 4242 4301 -1845 228 191 135 79 chr3 217337477 217337566 -699592 - MIR SINE MIR -106 156 63 2241 98 11 0 chr3 217337932 217338247 -698911 + AluSp SINE Alu 1 318 0 304 340 58 19 chr3 217338377 217338533 -698625 - MIR3 SINE MIR -14 194 33 452 240 140 1 chr3 217338830 217338968 -698190 + MIR SINE MIR 17 175 -33 2313 85 7 0 chr3 217339167 217339462 -697696 + AluY SINE Alu 3 299 -12 448 223 83 52 chr3 217340014 217340207 -696951 - L1ME3A LINE L1 -10 6160 5962 1038 240 137 26 chr3 217340211 217340598 -696560 - L1ME1 LINE L1 -15 6151 5722 2435 75 13 0 chr3 217341533 217341839 -695319 - AluSg SINE Alu 0 310 1 274 324 97 28 chr3 217342286 217342462 -694696 + L2 LINE L2 2477 2664 -650 2098 89 43 0 chr3 217343122 217343404 -693754 + AluSq SINE Alu 1 294 -19 336 241 74 37 chr3 217344092 217344200 -692958 - L2 LINE L2 -1 3271 3160 189 0 0 0 chr3 217344531 217344552 -692606 + (A)n Simple_repeat Simple_repeat 1 21 0 264 254 0 17 chr3 217346922 217346981 -690177 - MER91 DNA MER1_type 0 190 133 286 295 88 28 chr3 217347058 217347202 -689956 - MIR3 SINE MIR -67 141 5 774 191 125 0 chr3 217347468 217347636 -689522 - MER5A DNA MER1_type 0 189 1 257 264 11 22 chr3 217347658 217347749 -689409 + CT-rich Low_complexity Low_complexity 2 91 0 270 206 15 29 chr3 217347754 217347822 -689336 + MIR SINE MIR 54 120 -88 25 65 0 0 chr3 217348413 217348459 -688699 + GC_rich Low_complexity Low_complexity 1 46 0 27 29 0 0 chr3 217348697 217348731 -688427 + GC_rich Low_complexity Low_complexity 1 34 0 2191 108 3 0 chr3 217350841 217351129 -686029 - AluSx SINE Alu -23 289 1 4726 148 30 24 chr3 217351129 217351753 -685405 - L1MC1 LINE L1 -9 6324 5692 2603 45 0 0 chr3 217351753 217352044 -685114 - AluY SINE Alu -20 291 1 4726 148 30 24 chr3 217352044 217352250 -684908 - L1MC1 LINE L1 -641 5692 5489 535 316 60 38 chr3 217352250 217352696 -684462 - L1M4 LINE L1 -1882 5683 5228 2104 120 40 0 chr3 217352725 217353024 -684134 + AluSx SINE Alu 1 311 -1 2412 103 0 6 chr3 217353604 217353915 -683243 - AluSx SINE Alu -3 309 1 4749 205 35 4 chr3 217353915 217355284 -681874 - L1M4 LINE L1 -5463 2102 16 255 152 0 0 chr3 217355325 217355371 -681787 + (TA)n Simple_repeat Simple_repeat 2 47 0 207 0 0 0 chr3 217355370 217355393 -681765 + (T)n Simple_repeat Simple_repeat 1 23 0 * 501 208 42 0 chr3 217355397 217355493 -681665 - AluJo SINE Alu -96 216 117 715 251 59 0 chr3 217355646 217355833 -681325 + MER58A DNA MER1_type 27 224 0 298 169 56 0 chr3 217355935 217356006 -681152 - L1MC/D LINE L1 -2370 5438 5364 1505 164 12 64 chr3 217356009 217356338 -680820 + AluJo SINE Alu 1 312 0 27 0 0 0 chr3 217356364 217356391 -680767 + AT_rich Low_complexity Low_complexity 1 27 0 38 0 0 0 chr3 217357525 217357563 -679595 + AT_rich Low_complexity Low_complexity 1 38 0 180 0 0 0 chr3 217357576 217357596 -679562 + (TATATG)n Simple_repeat Simple_repeat 4 23 0 955 201 0 12 chr3 217357986 217358155 -679003 - FRAM SINE Alu -9 167 1 35 41 0 0 chr3 217360375 217360424 -676734 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr3 217360482 217360503 -676655 + AT_rich Low_complexity Low_complexity 1 21 0 2489 82 3 0 chr3 217360737 217361042 -676116 - AluSp SINE Alu -7 306 1 180 0 0 0 chr3 217362153 217362173 -674985 + (CATATA)n Simple_repeat Simple_repeat 4 23 0 38 0 0 0 chr3 217362186 217362224 -674934 + AT_rich Low_complexity Low_complexity 1 38 0 27 0 0 0 chr3 217363358 217363385 -673773 + AT_rich Low_complexity Low_complexity 1 27 0 1518 173 9 64 chr3 217363411 217363741 -673417 - AluJo SINE Alu 0 312 1 1894 158 10 16 chr3 217363746 217364057 -673101 - AluSx SINE Alu -3 309 1 412 292 98 42 chr3 217364067 217364303 -672855 - L1ME4a LINE L1 -237 5884 5636 249 232 26 80 chr3 217364409 217364560 -672598 + L1MC5 LINE L1 7783 7925 -36 213 316 0 0 chr3 217364723 217364780 -672378 + MER5A DNA MER1_type 9 65 -124 1321 244 37 13 chr3 217364823 217365204 -671954 + L1ME LINE L1 5341 5730 -440 800 251 161 22 chr3 217365221 217365544 -671614 - L1ME4a LINE L1 -215 5906 5539 331 281 184 11 chr3 217365683 217365868 -671290 - L1ME4a LINE L1 -744 5402 5186 213 65 0 0 chr3 217365868 217365899 -671259 + (A)n Simple_repeat Simple_repeat 1 31 0 2174 93 0 14 chr3 217365902 217366182 -670976 - AluSx SINE Alu -36 276 1 1842 158 30 0 chr3 217366184 217366482 -670676 - AluJo SINE Alu -5 307 1 2231 165 34 91 chr3 217366482 217366508 -670650 - L1M1 LINE L1 -517 5783 5757 2236 87 31 0 chr3 217366508 217366795 -670363 - AluSp SINE Alu -17 296 1 2231 165 34 91 chr3 217366795 217366928 -670230 - L1M1 LINE L1 -543 5757 5618 1975 158 13 0 chr3 217366928 217367231 -669927 - AluSx SINE Alu -5 307 1 2231 165 34 91 chr3 217367231 217367311 -669847 - L1M1 LINE L1 -682 5618 5535 2188 115 3 7 chr3 217367311 217367606 -669552 + AluSp SINE Alu 1 294 -19 2231 165 34 91 chr3 217367606 217367794 -669364 - L1M1 LINE L1 -765 5535 5338 2057 140 0 0 chr3 217367794 217368079 -669079 - AluSx SINE Alu -27 285 1 2231 165 34 91 chr3 217368079 217368629 -668529 - L1M1 LINE L1 -962 5338 4849 2004 188 70 113 chr3 217368827 217369370 -667788 - L1MD2 LINE L1 -2 8040 7475 1942 130 29 23 chr3 217369370 217369678 -667480 - AluJb SINE Alu -2 310 1 2004 188 70 113 chr3 217369678 217369883 -667275 - L1MD2 LINE L1 -567 7475 6231 1637 179 0 36 chr3 217370508 217370809 -666349 - AluJo SINE Alu -22 290 1 34 0 0 0 chr3 217372586 217372620 -664538 + AT_rich Low_complexity Low_complexity 1 34 0 26 0 0 0 chr3 217372681 217372707 -664451 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 217372743 217372764 -664394 + AT_rich Low_complexity Low_complexity 1 21 0 234 300 7 18 chr3 217373893 217373982 -663176 - MIR SINE MIR -102 106 20 204 191 135 79 chr3 217374039 217374128 -663030 - MIR SINE MIR -106 156 63 2249 98 11 0 chr3 217374494 217374809 -662349 + AluSp SINE Alu 1 318 0 274 340 58 19 chr3 217374939 217375095 -662063 - MIR3 SINE MIR -14 194 33 417 240 140 1 chr3 217375392 217375530 -661628 + MIR SINE MIR 17 175 -33 2539 67 0 0 chr3 217375726 217376025 -661133 + AluY SINE Alu 1 299 -12 474 223 83 52 chr3 217376577 217376770 -660388 - L1ME3A LINE L1 -10 6160 5962 1075 240 137 26 chr3 217376774 217377161 -659997 - L1ME1 LINE L1 -15 6151 5722 2443 75 13 0 chr3 217378098 217378404 -658754 - AluSg SINE Alu 0 310 1 235 318 102 34 chr3 217378851 217379027 -658131 + L2 LINE L2 2477 2664 -650 2122 89 43 0 chr3 217379687 217379969 -657189 + AluSq SINE Alu 1 294 -19 303 269 65 28 chr3 217380657 217380765 -656393 - L2 LINE L2 -1 3312 3201 189 0 0 0 chr3 217381096 217381117 -656041 + (A)n Simple_repeat Simple_repeat 1 21 0 248 254 0 17 chr3 217384864 217384923 -652235 - MER91 DNA MER1_type 0 190 133 262 292 91 29 chr3 217385000 217385139 -652019 - MIR3 SINE MIR -67 141 10 732 202 125 0 chr3 217385410 217385578 -651580 - MER5A DNA MER1_type 0 189 1 254 206 15 29 chr3 217385696 217385764 -651394 + MIR SINE MIR 54 120 -88 25 65 0 0 chr3 217386355 217386401 -650757 + GC_rich Low_complexity Low_complexity 1 46 0 27 29 0 0 chr3 217386639 217386673 -650485 + GC_rich Low_complexity Low_complexity 1 34 0 189 272 206 0 chr3 217390609 217390701 -646457 - L2 LINE L2 -1 3271 3161 209 189 0 0 chr3 217391043 217391080 -646078 + (CGTG)n Simple_repeat Simple_repeat 3 39 0 1053 179 0 10 chr3 217394230 217394425 -642733 + AluJo SINE Alu 114 306 -6 187 325 113 7 chr3 217394551 217394702 -642456 - MIR SINE MIR -74 188 22 231 271 53 27 chr3 217394920 217395047 -642111 + MIR SINE MIR 16 141 -67 2209 107 7 3 chr3 217395307 217395607 -641551 + AluSc SINE Alu 1 301 -8 1256 229 143 24 chr3 217395654 217395763 -641395 - L1MC4 LINE L1 0 8042 7947 240 35 0 0 chr3 217395763 217395792 -641366 + (TG)n Simple_repeat Simple_repeat 2 30 0 1256 229 143 24 chr3 217395792 217396184 -640974 - L1MC4 LINE L1 -95 7947 7481 690 247 66 25 chr3 217396168 217396411 -640747 - L1ME1 LINE L1 0 6166 5914 * 634 170 0 9 chr3 217396691 217396803 -640355 - FLAM_A SINE Alu -19 123 13 2237 116 0 0 chr3 217397527 217397821 -639337 + AluSg SINE Alu 1 294 -16 2435 74 0 16 chr3 217397821 217398130 -639028 + AluY SINE Alu 1 304 -7 2485 93 0 0 chr3 217398320 217398620 -638538 - AluSx SINE Alu -12 300 1 3905 132 72 5 chr3 217399061 217399796 -637362 + L1MA7 LINE L1 5506 6289 -2 2112 124 0 19 chr3 217399802 217400116 -637042 + AluSx SINE Alu 1 308 -4 1357 160 9 121 chr3 217400128 217400159 -636999 - AluJo SINE Alu -2 300 267 2273 104 3 0 chr3 217400159 217400458 -636700 + AluY SINE Alu 1 300 -11 1357 160 9 121 chr3 217400458 217400764 -636394 - AluJo SINE Alu -35 267 1 2487 172 36 0 chr3 217400780 217401281 -635877 - L1MB7 LINE L1 -9 6175 5657 2237 116 0 0 chr3 217403497 217403791 -633367 + AluSg SINE Alu 1 294 -16 2369 74 0 14 chr3 217403791 217404087 -633071 + AluY SINE Alu 1 292 -19 2643 44 0 0 chr3 217404352 217404646 -632512 - AluY SINE Alu -17 294 1 187 276 141 42 chr3 217406311 217406503 -630655 + L2 LINE L2 2481 2691 -623 195 300 146 9 chr3 217406567 217406677 -630481 - MIR SINE MIR -118 144 20 232 299 62 0 chr3 217407183 217407280 -629878 + MIR3 SINE MIR 61 163 -45 5523 162 78 13 chr3 217407309 217407552 -629606 - L1MA5A LINE L1 -2 6295 6069 2297 105 7 10 chr3 217407552 217407858 -629300 + AluSx SINE Alu 1 305 -7 5523 162 78 13 chr3 217407858 217409209 -627949 - L1MA5A LINE L1 -228 6069 4592 333 276 37 30 chr3 217409843 217409977 -627181 - MIR SINE MIR -57 205 71 328 236 28 0 chr3 217411733 217411805 -625353 - MER58 DNA MER1_type -1 2419 2346 * 353 153 0 69 chr3 217411802 217411874 -625284 - MER58 DNA MER1_type -105 110 44 248 247 0 27 chr3 217413006 217413079 -624079 + L3 LINE CR1 1425 1495 -82 286 302 44 25 chr3 217414907 217415066 -622092 + MER5A DNA MER1_type 23 184 -5 393 236 189 0 chr3 217415171 217415277 -621881 + MIR SINE MIR 117 242 -20 2831 224 96 71 chr3 217415820 217416002 -621156 + L2 LINE L2 1575 1751 -1563 2518 57 0 7 chr3 217416002 217416303 -620855 - AluY SINE Alu -12 299 1 2831 224 96 71 chr3 217416303 217417149 -620009 + L2 LINE L2 1751 2629 -685 224 238 12 38 chr3 217418808 217418888 -618270 + C-rich Low_complexity Low_complexity 3 80 0 27 0 0 0 chr3 217419039 217419066 -618092 + GC_rich Low_complexity Low_complexity 1 27 0 26 88 0 0 chr3 217419156 217419224 -617934 + GC_rich Low_complexity Low_complexity 1 68 0 312 346 58 6 chr3 217421212 217421368 -615790 + MIR SINE MIR 67 230 -32 187 200 44 22 chr3 217421561 217421576 -615582 + MIR SINE MIR 190 235 -27 189 200 0 0 chr3 217421576 217421606 -615552 + L2 LINE L2 3210 3239 -33 194 240 40 20 chr3 217421608 217421658 -615500 + MIR SINE MIR 190 240 -22 619 284 25 58 chr3 217421958 217422017 -615141 + MER115 DNA AcHobo 1 60 -633 519 278 148 0 chr3 217422017 217422179 -614979 - MER5A DNA MER1_type 0 189 4 619 284 25 58 chr3 217422179 217422272 -614886 + MER115 DNA AcHobo 60 155 -538 2148 114 0 20 chr3 217422272 217422570 -614588 - AluSg SINE Alu -18 292 1 619 284 25 58 chr3 217422570 217422691 -614467 + MER115 DNA AcHobo 155 266 -427 799 205 6 0 chr3 217422859 217423015 -614143 + Zaphod DNA AcHobo 3873 4029 -2 1677 160 46 14 chr3 217423352 217423634 -613524 + AluJb SINE Alu 1 291 -21 300 287 101 47 chr3 217423673 217423802 -613356 + MIR3 SINE MIR 33 168 -40 276 204 20 0 chr3 217423986 217424035 -613123 - MER5A DNA MER1_type -14 175 126 824 125 17 8 chr3 217424038 217424158 -613000 + FLAM_A SINE Alu 1 121 -12 1337 158 54 58 chr3 217424168 217424281 -612877 + AluJo SINE Alu 1 113 -199 246 32 0 0 chr3 217424281 217424312 -612846 + (CA)n Simple_repeat Simple_repeat 2 32 0 1337 158 54 58 chr3 217424312 217424458 -612700 + AluJo SINE Alu 113 259 -53 277 211 18 0 chr3 217424458 217424515 -612643 - MER5A DNA MER1_type -131 58 1 196 340 163 7 chr3 217425505 217425652 -611506 + MIR3 SINE MIR 16 185 -23 966 190 0 2 chr3 217426743 217427366 -609792 + (TG)n Simple_repeat Simple_repeat 1 621 0 645 219 170 34 chr3 217427445 217427696 -609462 + L1MC1 LINE L1 6059 6343 -1 679 230 36 94 chr3 217428380 217428770 -608388 + HAL1b LINE L1 1201 1318 -30 2330 113 0 0 chr3 217428840 217429151 -608007 + AluSx SINE Alu 1 311 -1 240 284 65 71 chr3 217429818 217429987 -607171 - MIR3 SINE MIR -14 194 27 294 247 47 0 chr3 217430101 217430186 -606972 - HERV16 LTR ERVL -4907 89 1 387 307 55 13 chr3 217430186 217430580 -606578 - LTR16A LTR ERVL 0 450 16 509 270 121 47 chr3 217430698 217430842 -606316 - MIR SINE MIR -3 259 92 2214 88 111 15 chr3 217430842 217431184 -605974 + THE1C LTR MaLR 1 375 0 509 270 121 47 chr3 217431184 217431254 -605904 - MIR SINE MIR -170 92 29 315 330 67 41 chr3 217431908 217432102 -605056 + L2 LINE L2 3074 3272 0 1538 219 64 24 chr3 217432291 217432666 -604492 - MLT1B LTR MaLR 0 390 1 218 261 34 67 chr3 217433207 217433326 -603832 - MIR SINE MIR -53 209 95 1624 152 46 15 chr3 217434279 217434608 -602550 - L1MB3 LINE L1 -30 6153 5815 229 69 0 0 chr3 217434693 217434722 -602436 - LTR6A LTR ERV1 -462 102 74 21 0 0 0 chr3 217435632 217435653 -601505 + AT_rich Low_complexity Low_complexity 1 21 0 198 105 105 8 chr3 217435682 217435815 -601343 + (TA)n Simple_repeat Simple_repeat 1 146 0 2270 183 47 2 chr3 217435865 217436331 -600827 - L1MB3 LINE L1 -378 5805 5319 1925 97 0 8 chr3 217437212 217437479 -599679 - AluSq SINE Alu -48 265 1 231 289 65 25 chr3 217437517 217437669 -599489 - L1MEc LINE L1 -3532 2683 2520 180 77 0 0 chr3 217437669 217437695 -599463 + (TG)n Simple_repeat Simple_repeat 1 26 0 231 289 65 25 chr3 217437695 217437743 -599415 - L1MEc LINE L1 -3695 2520 2475 353 345 73 33 chr3 217437762 217438037 -599121 - L1MEc LINE L1 -3944 2452 2167 1026 237 68 8 chr3 217438084 217438350 -598808 + L1MD3 LINE L1 7706 7987 -8 637 339 26 9 chr3 217438604 217439023 -598135 + L1MEc LINE L1 1253 1678 -4718 304 271 167 21 chr3 217439131 217439275 -597883 - L1MC/D LINE L1 -2208 5600 5436 1835 165 0 14 chr3 217439275 217439566 -597592 + AluJb SINE Alu 1 287 -25 23 0 0 0 chr3 217439566 217439589 -597569 + AT_rich Low_complexity Low_complexity 1 23 0 2035 120 3 7 chr3 217439922 217440241 -596917 - AluSx SINE Alu 0 318 1 2172 147 94 122 chr3 217440391 217440931 -596227 - L1MA9 LINE L1 0 6312 5758 2458 76 0 16 chr3 217440931 217441247 -595911 - AluY SINE Alu 0 311 1 1833 158 30 0 chr3 217441249 217441547 -595611 - AluJo SINE Alu -5 307 1 2172 147 94 122 chr3 217441547 217441573 -595585 - L1MA9 LINE L1 -555 5757 5732 2222 87 31 0 chr3 217441573 217441860 -595298 - AluSp SINE Alu -17 296 1 2172 147 94 122 chr3 217441860 217441971 -595187 - L1MA9 LINE L1 -580 5732 5650 1919 165 13 0 chr3 217441993 217442296 -594862 - AluSx SINE Alu -5 307 1 346 43 21 0 chr3 217442301 217442348 -594810 + L1MA5A LINE L1 6051 6098 -199 1038 240 137 26 chr3 217442879 217443266 -593892 + L1ME1 LINE L1 5722 6151 -15 448 223 83 52 chr3 217443270 217443463 -593695 + L1ME3A LINE L1 5962 6160 -10 2400 73 0 7 chr3 217444015 217444316 -592842 - AluY SINE Alu -12 299 1 2191 118 0 16 chr3 217445759 217446063 -591095 + AluSx SINE Alu 1 299 -13 2442 84 0 0 chr3 217446202 217446501 -590657 - AluSg SINE Alu -11 299 1 240 253 152 20 chr3 217446569 217446668 -590490 - L2 LINE L2 -14 3299 3188 218 130 0 43 chr3 217447085 217447131 -590027 + L2 LINE L2 3214 3257 -15 6129 87 17 8 chr3 217447613 217448775 -588383 + L1PA6 LINE L1 4961 6137 -17 2103 142 0 3 chr3 217449110 217449420 -587738 - AluSx SINE Alu -3 309 1 448 268 168 70 chr3 217449421 217449787 -587371 + L2 LINE L2 2737 3159 -154 727 190 0 0 chr3 217449900 217450021 -587137 - FLAM_A SINE Alu -12 121 1 1805 133 0 0 chr3 217450534 217450783 -586375 + AluSx SINE Alu 49 297 -15 1026 194 22 0 chr3 217451286 217451466 -585692 + MER5A DNA MER1_type 3 186 -3 1395 169 7 62 chr3 217451495 217451768 -585390 + AluJo SINE Alu 2 259 -53 24 32 0 0 chr3 217451803 217451834 -585324 + AT_rich Low_complexity Low_complexity 1 31 0 1125 166 16 5 chr3 217451863 217452050 -585108 - MER5A DNA MER1_type 0 189 1 2235 121 3 0 chr3 217452581 217452886 -584272 + AluSx SINE Alu 1 306 -6 2388 93 0 7 chr3 217453038 217453340 -583818 + AluSq SINE Alu 1 300 -13 1574 62 0 5 chr3 217454829 217455021 -582137 - AluY SINE Alu -12 299 109 908 99 7 0 chr3 217455021 217455172 -581986 - HSATII Satellite Satellite -18 152 1 889 73 0 0 chr3 217455184 217455293 -581865 - AluY SINE Alu -202 109 1 1271 193 35 31 chr3 217455324 217455578 -581580 - AluJo SINE Alu -23 289 35 2307 110 0 19 chr3 217455719 217456036 -581122 - AluSq SINE Alu -2 311 1 318 207 54 72 chr3 217456860 217456971 -580187 + L1ME4a LINE L1 5995 6103 -18 433 298 35 81 chr3 217457112 217457179 -579979 - MIR SINE MIR -70 192 124 2029 118 29 0 chr3 217457179 217457451 -579707 + AluSx SINE Alu 1 280 -32 246 62 0 0 chr3 217457451 217457483 -579675 + (CAAT)n Simple_repeat Simple_repeat 4 35 0 433 298 35 81 chr3 217457483 217457612 -579546 - MIR SINE MIR -136 126 4 1948 175 0 0 chr3 217458104 217458413 -578745 + AluJb SINE Alu 1 309 -3 2469 64 20 3 chr3 217458440 217458738 -578420 + AluY SINE Alu 1 303 -8 22 0 0 0 chr3 217459369 217459391 -577767 + AT_rich Low_complexity Low_complexity 1 22 0 2262 114 3 0 chr3 217459503 217459809 -577349 + AluSp SINE Alu 1 307 -6 781 68 39 0 chr3 217460042 217460145 -577013 - L1PA8 LINE L1 -13 6159 6053 341 179 39 9 chr3 217460146 217460242 -576916 - Alu SINE Alu -3 298 243 4312 99 12 8 chr3 217460242 217460887 -576271 - L1PA8 LINE L1 -125 6047 5400 1183 94 9 4 chr3 217460893 217461108 -576050 - AluSq SINE Alu -10 303 1 251 75 25 0 chr3 217461108 217461148 -576010 - L1PA8 LINE L1 -756 5399 5359 1117 106 7 0 chr3 217461149 217461291 -575867 - AluSg/x SINE Alu -14 296 154 15729 106 17 14 chr3 217461291 217462076 -575082 - L1PA8 LINE L1 -779 5367 4586 2267 119 0 0 chr3 217462076 217462386 -574772 + AluY SINE Alu 1 310 -1 15729 106 17 14 chr3 217462386 217463871 -573287 - L1PA8 LINE L1 -1560 4586 3087 2352 113 3 0 chr3 217463871 217464180 -572978 - AluSp SINE Alu -3 310 1 15729 106 17 14 chr3 217464180 217464420 -572738 - L1PA8 LINE L1 -3059 3087 2849 1629 173 10 51 chr3 217464422 217464734 -572424 - AluJo SINE Alu -13 299 1 1611 90 40 5 chr3 217464856 217465078 -572080 - MER30 DNA MER1_type 0 230 1 2120 81 71 3 chr3 217465247 217465530 -571628 - AluY SINE Alu -9 302 1 595 316 147 60 chr3 217465621 217466404 -570754 + L2 LINE L2 2387 3233 -39 3277 187 110 38 chr3 217466404 217466488 -570670 + MER21B LTR ERV1 1 78 -785 2117 119 7 7 chr3 217466488 217466774 -570384 - AluSx SINE Alu -14 298 13 3277 187 110 38 chr3 217466774 217467480 -569678 + MER21B LTR ERV1 78 848 -15 208 138 0 0 chr3 217467488 217467517 -569641 + L2 LINE L2 3229 3257 -15 2116 114 7 13 chr3 217467520 217467819 -569339 + AluSq SINE Alu 2 298 -15 250 256 0 24 chr3 217468391 217468473 -568685 + MER116 DNA Mariner 1 80 0 533 242 55 33 chr3 217468692 217468874 -568284 - MIR SINE MIR -60 202 17 2180 117 0 0 chr3 217469016 217469315 -567843 + AluJb SINE Alu 1 299 -13 1966 130 74 0 chr3 217469377 217469661 -567497 + AluSx SINE Alu 3 307 -5 389 266 47 31 chr3 217470205 217470333 -566825 - MIR3 SINE MIR -64 144 15 2555 72 0 3 chr3 217470789 217471096 -566062 + AluSx SINE Alu 1 306 -6 329 309 109 27 chr3 217471478 217471734 -565424 + L2 LINE L2 2161 2437 -877 261 294 20 20 chr3 217471763 217471865 -565293 + MER5B DNA MER1_type 1 102 -76 843 182 0 0 chr3 217472053 217472185 -564973 + FLAM_C SINE Alu 1 132 -1 182 289 103 65 chr3 217472213 217472476 -564682 + L2 LINE L2 2612 2884 -430 723 198 141 95 chr3 217472645 217472739 -564419 + L1ME1 LINE L1 4853 4941 -1205 2290 89 0 0 chr3 217472739 217473020 -564138 + AluSx SINE Alu 1 281 -31 * 11433 27 25 33 chr3 217473019 217474408 -562750 - SVA Other Other -1 1385 8 723 198 141 95 chr3 217473020 217474424 -562734 + L1ME1 LINE L1 4941 6279 133 315 0 0 0 chr3 217474424 217474459 -562699 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 723 198 141 95 chr3 217474459 217474684 -562474 + L1ME1 LINE L1 6279 5209 -937 1885 159 0 44 chr3 217474684 217475004 -562154 + AluJo SINE Alu 5 310 -2 690 224 37 75 chr3 217475021 217475089 -562069 + L1ME1 LINE L1 5522 5591 -575 2346 98 3 0 chr3 217475089 217475386 -561772 + AluSg SINE Alu 2 299 -11 2197 91 0 3 chr3 217475388 217475673 -561485 + AluY SINE Alu 3 286 -25 201 39 0 0 chr3 217475673 217475699 -561459 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 690 224 37 75 chr3 217475699 217475867 -561291 + L1ME1 LINE L1 5590 5753 -413 798 257 48 70 chr3 217475925 217476031 -561127 + L1ME1 LINE L1 5737 5844 -320 4008 205 57 12 chr3 217476031 217476891 -560267 - MER54A LTR ERVL -2 899 1 798 257 48 70 chr3 217476891 217477166 -559992 + L1ME1 LINE L1 5844 6108 -56 1040 118 31 0 chr3 217477166 217477327 -559831 + FRAM SINE Alu 1 165 -11 21 0 0 0 chr3 217477565 217477586 -559572 + GC_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 217478053 217478077 -559081 + GC_rich Low_complexity Low_complexity 1 24 0 29 78 0 0 chr3 217478710 217478774 -558384 + GC_rich Low_complexity Low_complexity 1 64 0 425 266 169 34 chr3 217481253 217481430 -555728 - MIR SINE MIR -56 206 6 181 261 35 63 chr3 217481553 217481695 -555463 - L2 LINE L2 -467 2847 2710 1819 167 61 19 chr3 217482114 217482474 -554684 + THE1C LTR MaLR 1 375 0 273 291 154 8 chr3 217482625 217482742 -554416 + MIR SINE MIR 22 155 -107 811 158 0 0 chr3 217482749 217482869 -554289 + AluSg/x SINE Alu 176 295 -15 2322 95 3 0 chr3 217482954 217483250 -553908 + AluSg SINE Alu 1 297 -13 2429 75 3 28 chr3 217483250 217483568 -553590 + AluY SINE Alu 1 310 -1 488 179 10 12 chr3 217483572 217483672 -553486 + L1 LINE L1 4488 4583 -1563 2010 145 13 0 chr3 217483672 217483976 -553182 - AluSx SINE Alu -4 308 1 488 179 10 12 chr3 217483976 217484000 -553158 + L1 LINE L1 4583 4606 -1540 569 134 41 0 chr3 217484000 217484097 -553061 - LTR12 LTR ERV1 -133 581 481 310 260 8 32 chr3 217484098 217484221 -552937 - LTR30 LTR ERV1 -79 643 524 2752 10 0 3 chr3 217484269 217484565 -552593 - AluYa5 SINE Alu -16 295 1 21 0 0 0 chr3 217484632 217484653 -552505 + AT_rich Low_complexity Low_complexity 1 21 0 446 220 0 44 chr3 217484670 217484761 -552397 - FRAM SINE Alu -78 98 12 674 231 8 0 chr3 217484790 217484911 -552247 + FLAM_A SINE Alu 1 122 -11 2377 83 7 0 chr3 217484931 217485233 -551925 - AluY SINE Alu -7 304 1 301 179 115 39 chr3 217485254 217485332 -551826 - L1ME3 LINE L1 0 6162 6079 2399 79 3 7 chr3 217485506 217485810 -551348 + AluSx SINE Alu 1 303 -9 335 346 209 0 chr3 217485810 217486021 -551137 + HAL1 LINE L1 207 461 -2046 1098 173 61 0 chr3 217486027 217486224 -550934 + MER3 DNA MER1_type 1 209 0 259 191 0 0 chr3 217486224 217486271 -550887 - MER3 DNA MER1_type 0 209 163 546 256 82 74 chr3 217486284 217486553 -550605 + HAL1 LINE L1 468 738 -1769 452 169 0 14 chr3 217486832 217486903 -550255 + AluJ/FLAM SINE Alu 2 71 -241 305 156 130 39 chr3 217486954 217487009 -550149 + L1ME3 LINE L1 6079 6144 -18 2197 119 17 0 chr3 217487009 217487304 -549854 - AluSx SINE Alu -12 300 1 305 156 130 39 chr3 217487304 217487325 -549833 + L1ME3 LINE L1 6144 6162 0 2200 113 3 7 chr3 217487692 217487994 -549164 - AluSg SINE Alu -9 301 1 2059 145 7 10 chr3 217488065 217488375 -548783 + AluSx SINE Alu 1 309 -3 344 167 108 29 chr3 217488377 217488479 -548679 - MER119 DNA MER1_type -197 386 277 789 134 0 9 chr3 217488524 217488636 -548522 + FLAM_C SINE Alu 5 115 -18 1931 121 3 34 chr3 217488646 217488968 -548190 - AluSx SINE Alu 0 312 1 942 264 34 11 chr3 217489024 217489293 -547865 - MER119 DNA MER1_type -307 276 2 323 348 43 14 chr3 217489300 217489441 -547717 - L1ME3 LINE L1 -117 6004 5860 1005 298 138 19 chr3 217489442 217489979 -547179 + HAL1 LINE L1 11 611 -1896 235 276 67 71 chr3 217489980 217490075 -547083 - HAL1 LINE L1 -85 2422 2328 2109 133 7 3 chr3 217490075 217490376 -546782 - AluSx SINE Alu -10 302 1 235 276 67 71 chr3 217490376 217490505 -546653 - HAL1 LINE L1 -179 2328 2199 293 263 129 14 chr3 217490549 217490694 -546464 - MER20B DNA MER1_type -17 202 40 1215 248 71 30 chr3 217490741 217491245 -545913 - HAL1 LINE L1 -353 2154 1630 917 215 54 76 chr3 217491331 217491420 -545738 - L1MC4a LINE L1 0 7808 7719 2236 132 0 0 chr3 217491420 217491730 -545428 - AluSx SINE Alu -2 310 1 763 184 0 16 chr3 217491739 217491864 -545294 - FLAM_A SINE Alu -10 123 1 917 215 54 76 chr3 217491864 217492118 -545040 - L1MC4a LINE L1 -97 7711 7463 2356 104 3 0 chr3 217492119 217492427 -544731 - AluSq SINE Alu -4 309 1 1788 188 7 3 chr3 217492428 217492732 -544426 - AluJo SINE Alu -7 305 1 1091 237 163 48 chr3 217492732 217493383 -543775 - L1ME3 LINE L1 -748 5398 4823 2155 118 7 13 chr3 217493383 217493687 -543471 - AluSx SINE Alu -10 302 1 1373 71 0 15 chr3 217493694 217493890 -543268 - L1MB3 LINE L1 0 6183 5991 1091 237 163 48 chr3 217493890 217493987 -543171 - L1ME3 LINE L1 -1328 4818 4734 2287 128 0 0 chr3 217493987 217494292 -542866 - AluSx SINE Alu -7 305 1 1091 237 163 48 chr3 217494292 217494731 -542427 - L1ME3 LINE L1 -1412 4734 358 583 270 198 13 chr3 217494764 217495153 -542005 - HAL1 LINE L1 -1775 732 272 2288 111 0 10 chr3 217495181 217495479 -541679 - AluSq SINE Alu -18 295 1 228 288 30 0 chr3 217496082 217496148 -541010 + HAL1 LINE L1 12 79 -2428 1085 84 0 7 chr3 217496152 217496295 -540863 - AluSp/q SINE Alu -6 307 166 438 169 0 0 chr3 217496313 217496378 -540780 - AluJ/FLAM SINE Alu -245 67 3 498 291 299 20 chr3 217498318 217498674 -538484 - L1MC/D LINE L1 -2005 5803 5548 2284 105 3 0 chr3 217498674 217498969 -538189 - AluSx SINE Alu -16 296 1 498 291 299 20 chr3 217498969 217499017 -538141 - L1MC/D LINE L1 -2260 5548 5286 306 253 96 48 chr3 217499031 217499114 -538044 - L2 LINE L2 -37 3276 3190 2201 104 7 19 chr3 217499254 217499562 -537596 - AluSx SINE Alu -8 304 1 327 274 75 62 chr3 217499673 217499790 -537368 + L1MC4a LINE L1 5754 5875 -1933 2272 112 7 3 chr3 217499790 217500095 -537063 + AluSx SINE Alu 1 306 -6 327 274 75 62 chr3 217500095 217500123 -537035 + L1MC4a LINE L1 5875 5901 -1907 2349 99 0 0 chr3 217500324 217500627 -536531 + AluY SINE Alu 1 303 -8 22 56 0 0 chr3 217501061 217501097 -536061 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 217501419 217501440 -535718 + AT_rich Low_complexity Low_complexity 1 21 0 1860 167 0 3 chr3 217501580 217501862 -535296 + AluSx SINE Alu 14 294 -18 2213 127 0 7 chr3 217501862 217502170 -534988 + AluSg SINE Alu 1 306 -4 281 240 20 50 chr3 217502582 217502682 -534476 - L1ME LINE L1 -5659 411 315 2157 94 7 0 chr3 217502828 217503103 -534055 + AluSq SINE Alu 1 277 -36 219 36 0 0 chr3 217503103 217503131 -534027 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 244 242 15 0 chr3 217503169 217503235 -533923 - MIR SINE MIR 0 262 196 2951 117 73 20 chr3 217503235 217503730 -533428 - LTR9 LTR ERV1 -91 521 1 1280 129 0 10 chr3 217503730 217503932 -533226 - HUERS-P3 LTR ERV1 0 8919 8720 2316 131 0 0 chr3 217504011 217504323 -532835 - AluSx SINE Alu 0 312 1 877 160 15 53 chr3 217504423 217504532 -532626 - PABL_A-int LTR ERV1 -2430 2585 2485 2053 130 0 27 chr3 217504532 217504844 -532314 + AluSx SINE Alu 1 304 0 877 160 15 53 chr3 217504844 217504939 -532219 - PABL_A-int LTR ERV1 -2530 2485 2388 2413 169 83 8 chr3 217504947 217505060 -532098 - PABL_A-int LTR ERV1 -473 6945 6842 2279 100 0 0 chr3 217505060 217505351 -531807 + AluSx SINE Alu 1 291 -21 2413 169 83 8 chr3 217505351 217505721 -531437 - PABL_A-int LTR ERV1 -576 6842 6426 1924 123 15 0 chr3 217505721 217505990 -531168 + AluSx SINE Alu 3 275 -37 629 188 7 51 chr3 217506155 217506293 -530865 - FLAM_C SINE Alu 0 133 2 2409 81 0 3 chr3 217506317 217506612 -530546 - AluY SINE Alu -17 294 1 1585 123 198 8 chr3 217507123 217507376 -529782 + AluSg1 SINE Alu 1 301 -8 2073 92 39 59 chr3 217507376 217507682 -529476 + AluSp SINE Alu 1 300 -13 4749 200 36 9 chr3 217507683 217507861 -529297 - L1M1 LINE L1 -5284 2281 2109 2251 114 7 7 chr3 217507861 217508167 -528991 - AluSq SINE Alu -7 306 1 4749 200 36 9 chr3 217508167 217509537 -527621 - L1M1 LINE L1 -5456 2109 16 255 152 0 0 chr3 217509578 217509624 -527534 + (TA)n Simple_repeat Simple_repeat 2 47 0 207 0 0 0 chr3 217509623 217509646 -527512 + (T)n Simple_repeat Simple_repeat 1 23 0 * 1249 131 0 11 chr3 217509654 217509830 -527328 - AluSg SINE Alu -99 211 38 360 298 158 26 chr3 217510023 217510251 -526907 - L1 LINE L1 -3600 2546 2289 918 170 39 0 chr3 217510275 217510428 -526730 - FRAM SINE Alu -18 158 1 781 68 39 0 chr3 217510478 217510581 -526577 - L1PA8 LINE L1 -13 6159 6053 341 179 39 9 chr3 217510582 217510678 -526480 - Alu SINE Alu -3 299 244 4454 94 12 2 chr3 217510678 217511319 -525839 - L1PA8 LINE L1 -125 6047 5400 2223 123 3 0 chr3 217511325 217511625 -525533 - AluSq SINE Alu -10 303 3 395 92 92 13 chr3 217511628 217511704 -525454 - L1PA15-16 LINE L1 -5183 1666 1585 2157 127 0 3 chr3 217511706 217511997 -525161 + AluSx SINE Alu 6 295 -17 1461 194 3 58 chr3 217512008 217512156 -525002 + AluJo SINE Alu 1 156 -156 2228 108 0 3 chr3 217512156 217512452 -524706 + AluSg SINE Alu 1 295 -15 1461 194 3 58 chr3 217512452 217512633 -524525 + AluJo SINE Alu 156 312 0 279 79 0 0 chr3 217512642 217512680 -524478 + (GGAA)n Simple_repeat Simple_repeat 3 40 0 2261 57 7 11 chr3 217512768 217513077 -524081 + AluY SINE Alu 1 308 0 1558 152 108 4 chr3 217513081 217513350 -523808 + AluJb SINE Alu 9 305 -7 593 209 6 57 chr3 217513363 217513540 -523618 - MER3 DNA MER1_type -87 122 2 250 312 0 40 chr3 217513553 217513678 -523480 - HAL1b LINE L1 -741 607 488 38 0 0 0 chr3 217513680 217513718 -523440 + AT_rich Low_complexity Low_complexity 1 38 0 1817 46 9 5 chr3 217513875 217514094 -523064 - AluY SINE Alu -16 295 76 1353 230 36 6 chr3 217514095 217514152 -523006 - L1M4 LINE L1 -882 5264 5210 2332 87 10 16 chr3 217514152 217514464 -522694 - AluSx SINE Alu -1 311 2 1353 230 36 6 chr3 217514464 217514771 -522387 - L1M4 LINE L1 -936 5210 4889 2486 93 0 0 chr3 217514775 217515085 -522073 - AluSx SINE Alu -2 310 1 272 143 41 0 chr3 217515085 217515134 -522024 - L1M4 LINE L1 -1349 4797 4747 * 518 192 0 156 chr3 217515131 217515243 -521915 - L1M4 LINE L1 -1826 4320 4259 1545 173 32 25 chr3 217515243 217515406 -521752 - AluJb SINE Alu -26 286 119 183 42 0 0 chr3 217515406 217515430 -521728 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 1545 173 32 25 chr3 217515430 217515550 -521608 - AluJb SINE Alu -193 119 1 518 192 0 156 chr3 217515550 217515661 -521497 - L1M4 LINE L1 -1887 4259 4132 271 135 0 0 chr3 217515661 217515698 -521460 + AluSq SINE Alu 1 37 -265 2138 88 59 0 chr3 217515698 217515970 -521188 + AluSq SINE Alu 13 300 -13 265 354 0 0 chr3 217515981 217516077 -521081 + L1M4 LINE L1 3711 3806 -2340 1630 183 13 17 chr3 217516148 217516449 -520709 + AluJo SINE Alu 1 300 -12 2340 98 0 0 chr3 217516454 217516750 -520408 + AluSq SINE Alu 1 296 -17 1921 136 3 13 chr3 217517033 217517335 -519823 + AluJb SINE Alu 1 299 -13 764 162 0 42 chr3 217517729 217517871 -519287 + AluJo SINE Alu 1 136 -176 1845 169 0 16 chr3 217518707 217519014 -518144 - AluSx SINE Alu -10 302 1 296 133 0 0 chr3 217519044 217519089 -518069 + L1MD3 LINE L1 5393 5437 -737 824 145 0 0 chr3 217519095 217519219 -517939 + AluSg/x SINE Alu 176 299 -11 940 254 173 25 chr3 217519223 217519293 -517865 + L1MD3 LINE L1 5431 5489 -695 1873 125 71 0 chr3 217519293 217519574 -517584 + AluSp SINE Alu 1 301 -12 940 254 173 25 chr3 217519574 217519914 -517244 + L1MD3 LINE L1 5489 5908 -276 1347 279 60 32 chr3 217520046 217520280 -516878 - L2 LINE L2 0 3313 3087 1561 181 6 35 chr3 217520280 217520595 -516563 + AluJo SINE Alu 1 306 -6 1347 279 60 32 chr3 217520595 217521137 -516021 - L2 LINE L2 -226 3087 2511 271 169 14 70 chr3 217521141 217521212 -515946 + L1MEc LINE L1 686 752 -5644 255 31 0 0 chr3 217521417 217521449 -515709 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1548 123 19 0 chr3 217521457 217521669 -515489 + AluSx SINE Alu 1 216 -96 186 43 0 0 chr3 217521685 217521708 -515450 + (A)n Simple_repeat Simple_repeat 1 23 0 342 239 115 0 chr3 217522165 217522278 -514880 + L1MEc LINE L1 738 863 -5533 1578 154 126 72 chr3 217522338 217522577 -514581 + L1MC2 LINE L1 5848 6073 -271 729 168 24 0 chr3 217522577 217522702 -514456 + FLAM_A SINE Alu 5 132 -1 1578 154 126 72 chr3 217522702 217522923 -514235 + L1MC2 LINE L1 6073 6333 -11 1988 145 7 7 chr3 217522937 217523233 -513925 + AluSx SINE Alu 1 296 -16 2098 120 0 3 chr3 217523235 217523548 -513610 + AluSg SINE Alu 1 312 0 1871 162 0 25 chr3 217523710 217524024 -513134 - AluSx SINE Alu -6 306 1 262 86 0 0 chr3 217524033 217524095 -513063 - Alu SINE Alu 0 310 249 3025 131 50 30 chr3 217524712 217524832 -512326 - MER41B LTR ERV1 0 635 519 2123 100 13 10 chr3 217524832 217525133 -512025 + AluSq SINE Alu 1 302 -11 3025 131 50 30 chr3 217525133 217525582 -511576 - MER41B LTR ERV1 -116 519 1 1779 143 48 3 chr3 217525665 217525958 -511200 - AluJb SINE Alu -4 308 3 1768 189 0 16 chr3 217526526 217526752 -510406 - AluJb SINE Alu 0 312 91 4712 104 34 7 chr3 217526752 217527425 -509733 - LTR8 LTR ERV1 0 691 1 1768 189 0 16 chr3 217527425 217527515 -509643 - AluJb SINE Alu -221 91 1 363 176 0 15 chr3 217527589 217527657 -509501 + AluJ/FRAM SINE Alu 232 298 -4 2512 138 9 28 chr3 217527837 217527871 -509287 + L1PA16 LINE L1 5557 5590 -576 2178 128 0 0 chr3 217527871 217528176 -508982 - AluSx SINE Alu -7 305 1 2512 138 9 28 chr3 217528176 217528567 -508591 + L1PA16 LINE L1 5590 5974 -192 2203 112 16 13 chr3 217528567 217528879 -508279 + AluSq SINE Alu 1 313 0 323 253 16 0 chr3 217528889 217529012 -508146 + L1MEc LINE L1 1006 1136 -5069 1386 102 0 0 chr3 217529068 217529244 -507914 + AluSq SINE Alu 1 176 -137 726 90 0 54 chr3 217529291 217529402 -507756 + AluSq SINE Alu 181 285 -28 390 261 29 50 chr3 217529420 217529620 -507538 + L1MEc LINE L1 1236 1432 -4964 2377 63 3 13 chr3 217529620 217529920 -507238 + AluY SINE Alu 1 297 -14 390 261 29 50 chr3 217529920 217529957 -507201 + L1MEc LINE L1 1432 1468 -4928 1543 159 9 55 chr3 217529957 217530284 -506874 + AluJo SINE Alu 1 312 0 841 240 0 15 chr3 217530286 217530482 -506676 - MER97a DNA MER1_type? -657 237 45 201 128 77 0 chr3 217530549 217530588 -506570 + L2 LINE L2 2343 2384 -930 29 60 0 0 chr3 217530948 217530998 -506160 + GC_rich Low_complexity Low_complexity 1 50 0 5348 240 72 119 chr3 217531847 217532110 -505048 - L1P4 LINE L1 -578 7007 6733 255 31 0 0 chr3 217532110 217532142 -505016 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1913 148 0 0 chr3 217532143 217532420 -504738 - AluSg SINE Alu -33 277 1 5348 240 72 119 chr3 217532420 217533096 -504062 - L1P4 LINE L1 -852 6733 6027 245 250 0 0 chr3 217533096 217533148 -504010 + LTR30 LTR ERV1 1 52 -670 5348 240 72 119 chr3 217533148 217533510 -503648 - L1P4 LINE L1 -1558 6027 5649 988 98 23 0 chr3 217533510 217533642 -503516 + AluY SINE Alu 1 135 -176 5348 240 72 119 chr3 217533642 217534064 -503094 - L1P4 LINE L1 -1936 5649 5209 1524 148 9 4 chr3 217534064 217534293 -502865 - AluSx SINE Alu -40 272 43 5348 240 72 119 chr3 217534293 217534406 -502752 - L1P4 LINE L1 -2376 5209 5092 2268 107 10 3 chr3 217534406 217534715 -502443 - AluSx SINE Alu 0 312 2 5348 240 72 119 chr3 217534715 217534827 -502331 - L1P4 LINE L1 -2493 5092 4976 1777 126 87 63 chr3 217534827 217534970 -502188 + THE1C LTR MaLR 1 139 -236 207 0 0 0 chr3 217534970 217534993 -502165 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2148 131 3 0 chr3 217534996 217535286 -501872 - AluSx SINE Alu -21 291 1 1777 126 87 63 chr3 217535286 217535504 -501654 + THE1C LTR MaLR 140 375 0 5348 240 72 119 chr3 217535504 217535821 -501337 - L1P4 LINE L1 -2609 4976 4646 2236 118 0 16 chr3 217535821 217535853 -501305 - AluSx SINE Alu -2 310 279 198 0 0 0 chr3 217535853 217535875 -501283 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2236 118 0 16 chr3 217535875 217536157 -501001 - AluSx SINE Alu -33 279 1 5348 240 72 119 chr3 217536157 217536326 -500832 - L1P4 LINE L1 -2939 4646 4471 8139 74 19 8 chr3 217536326 217537386 -499772 + MER11C LTR ERVK 1 1071 0 5348 240 72 119 chr3 217537386 217537927 -499231 - L1P4 LINE L1 -3114 4471 3906 2177 122 3 10 chr3 217537927 217538231 -498927 - AluSx SINE Alu -10 302 1 5348 240 72 119 chr3 217538231 217538700 -498458 - L1P4 LINE L1 -3679 3906 3416 1621 145 3 98 chr3 217538700 217539017 -498141 + AluJb SINE Alu 1 287 -25 5348 240 72 119 chr3 217539017 217539051 -498107 - L1P4 LINE L1 -4169 3416 3500 1971 105 33 40 chr3 217539051 217539355 -497803 - AluSc SINE Alu -7 302 1 5348 240 72 119 chr3 217539355 217539423 -497735 - L1P4 LINE L1 -4084 3501 3431 22 56 0 0 chr3 217539479 217539515 -497643 + AT_rich Low_complexity Low_complexity 1 36 0 2214 129 3 0 chr3 217539523 217539826 -497332 + AluSx SINE Alu 1 304 -8 2286 59 7 0 chr3 217540358 217540644 -496514 + L1PA5 LINE L1 5864 6151 -3 232 167 0 33 chr3 217542767 217542827 -494331 + CT-rich Low_complexity Low_complexity 5 62 0 2056 145 0 3 chr3 217543764 217544068 -493090 - AluSx SINE Alu -9 303 1 1006 116 7 0 chr3 217545612 217545759 -491399 - AluSg/x SINE Alu 0 312 165 2012 125 19 19 chr3 217546030 217546342 -490816 + AluSx SINE Alu 1 312 0 414 0 0 0 chr3 217546347 217546393 -490765 + (TA)n Simple_repeat Simple_repeat 2 47 0 642 154 0 9 chr3 217546566 217546676 -490482 + AluSg/x SINE Alu 186 294 -18 2574 37 0 0 chr3 217546871 217547165 -489993 + AluY SINE Alu 2 295 -16 1964 102 39 18 chr3 217547488 217547772 -489386 + AluSq SINE Alu 1 290 -23 289 299 9 9 chr3 217548623 217548730 -488428 + MIR SINE MIR 145 251 -11 2198 113 3 7 chr3 217548882 217549183 -487975 - AluSx SINE Alu -12 300 1 2119 137 3 0 chr3 217549366 217549666 -487492 - AluSx SINE Alu -11 301 1 917 125 0 22 chr3 217549855 217549991 -487167 - FLAM_C SINE Alu 0 133 1 311 224 54 151 chr3 217550150 217550409 -486749 - MLT1J LTR MaLR -168 343 110 527 233 0 0 chr3 217551586 217551689 -485469 + AluJb SINE Alu 198 300 -12 2238 89 34 0 chr3 217551694 217551985 -485173 + AluSx SINE Alu 1 301 -11 384 261 78 7 chr3 217552038 217552191 -484967 + L1M4 LINE L1 4258 4421 -1725 2054 81 66 4 chr3 217552193 217552466 -484692 + AluSx SINE Alu 17 306 -6 2067 117 7 0 chr3 217552664 217552981 -484177 + AluSq SINE Alu 1 319 0 2288 97 0 29 chr3 217553282 217553592 -483566 - AluSx SINE Alu -11 301 1 4204 132 72 4 chr3 217554033 217554767 -482391 + L1MA7 LINE L1 5506 6289 -2 2066 124 0 19 chr3 217554773 217555087 -482071 + AluSx SINE Alu 1 308 -4 1383 146 14 155 chr3 217555099 217555130 -482028 - AluJo SINE Alu -2 300 266 2306 90 0 0 chr3 217555130 217555419 -481739 + AluY SINE Alu 1 289 -22 1383 146 14 155 chr3 217555419 217555736 -481422 - AluJo SINE Alu -36 266 1 2642 170 38 0 chr3 217555752 217556252 -480906 - L1MB7 LINE L1 -9 6175 5657 378 288 47 6 chr3 217557609 217557779 -479379 - L1M4 LINE L1 -2121 4025 3849 2178 95 7 0 chr3 217558081 217558366 -478792 - AluSx SINE Alu -8 304 18 356 326 128 13 chr3 217558390 217558617 -478541 - L2 LINE L2 -1211 2103 1851 857 230 36 22 chr3 217558772 217559046 -478112 - AluYa5 SINE Alu -6 305 28 27 0 0 80 chr3 217559096 217559146 -478012 + AT_rich Low_complexity Low_complexity 1 46 0 1900 95 0 42 chr3 217559283 217559567 -477591 + AluSx SINE Alu 20 291 -21 2077 126 4 0 chr3 217561018 217561296 -475862 - AluSx SINE Alu -33 279 1 327 167 131 0 chr3 217561296 217561370 -475788 + L1MC/D LINE L1 5350 5438 -2370 772 251 59 0 chr3 217561472 217561659 -475499 - MER58A DNA MER1_type 0 224 27 483 208 42 0 chr3 217561811 217561907 -475251 + AluJo SINE Alu 117 216 -96 207 0 0 0 chr3 217561911 217561934 -475224 + (A)n Simple_repeat Simple_repeat 1 23 0 * 255 152 0 0 chr3 217561933 217561979 -475179 + (TA)n Simple_repeat Simple_repeat 2 47 0 2810 181 30 16 chr3 217562020 217562584 -474574 + L1M1 LINE L1 16 587 -6978 403 125 50 25 chr3 217562932 217563012 -474146 - AluS SINE Alu -216 87 6 877 74 0 0 chr3 217563027 217563135 -474023 + AluSp/q SINE Alu 193 300 -13 1535 160 41 11 chr3 217563147 217563415 -473743 + AluSq SINE Alu 1 276 -37 245 29 0 29 chr3 217764646 217764681 -272477 + (CCA)n Simple_repeat Simple_repeat 3 36 0 606 180 82 0 chr3 217765621 217765743 -271415 + FLAM_A SINE Alu 2 133 0 330 295 74 47 chr3 217767452 217767601 -269557 - MER5A DNA MER1_type -2 187 35 310 300 76 28 chr3 217769390 217769640 -267518 + L1ME LINE L1 5547 5808 -313 261 207 17 0 chr3 217770097 217770155 -267003 - HsTC2 DNA Tc2 -612 1286 1228 245 281 26 0 chr3 217770150 217770263 -266895 - HsTC2 DNA Tc2 -1775 123 8 * 781 171 41 122 chr3 217770635 217770880 -266278 + MER8 DNA MER2_type 14 238 -1 300 282 0 0 chr3 217770904 217770982 -266176 + MER5B DNA MER1_type 1 78 -100 2119 108 13 3 chr3 217771060 217771365 -265793 + AluSc SINE Alu 1 308 -1 1025 150 0 43 chr3 217771374 217771561 -265597 + FRAM SINE Alu 1 176 0 356 328 84 0 chr3 217771563 217771682 -265476 - HAL1b LINE L1 -85 1263 1135 4364 110 61 3 chr3 217772917 217773391 -263767 - L1MA4 LINE L1 -9 6291 5759 279 0 0 0 chr3 217773391 217773422 -263736 + (TG)n Simple_repeat Simple_repeat 2 32 0 4364 110 61 3 chr3 217773422 217773665 -263493 - L1MA4 LINE L1 -541 5759 5532 836 209 17 0 chr3 217773875 217774047 -263111 - MSTD LTR MaLR 0 396 222 1073 98 0 81 chr3 217774076 217774249 -262909 - AluSq SINE Alu -12 301 143 340 259 25 37 chr3 217774349 217774511 -262647 + MER104 DNA Tc2 18 177 -3 1558 184 39 11 chr3 217774698 217774980 -262178 - AluJb SINE Alu -22 290 1 317 245 200 73 chr3 217775249 217775494 -261664 - L1M4 LINE L1 -1979 4167 3892 1085 254 7 0 chr3 217775814 217776094 -261064 - L1PB4 LINE L1 0 6156 5875 4331 180 5 55 chr3 217776098 217776576 -260582 - L1 LINE L1 -1460 4686 4185 2344 62 0 3 chr3 217776576 217776868 -260290 - AluY SINE Alu -20 291 1 4331 180 5 55 chr3 217776868 217777492 -259666 - L1 LINE L1 -1961 4185 3640 1887 114 111 3 chr3 217778375 217778700 -258458 - MER46B DNA MER2_type 0 236 2 602 181 159 0 chr3 217778916 217779054 -258104 - L1MB7 LINE L1 -32 6152 5993 2554 198 81 15 chr3 217779056 217779461 -257697 - L1MB7 LINE L1 -547 5637 5260 2127 126 3 0 chr3 217779461 217779762 -257396 - AluSg SINE Alu -8 302 1 2554 198 81 15 chr3 217779762 217779818 -257340 - L1MB7 LINE L1 -924 5260 5209 221 0 35 0 chr3 217779818 217779847 -257311 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2554 198 81 15 chr3 217779847 217780386 -256772 - L1MB7 LINE L1 -975 5209 4581 1118 254 85 41 chr3 217780395 217780935 -256223 + L1MC5 LINE L1 6964 7527 -434 194 177 0 32 chr3 217781003 217781065 -256093 + (CATA)n Simple_repeat Simple_repeat 3 62 0 28 0 0 0 chr3 217781093 217781121 -256037 + AT_rich Low_complexity Low_complexity 1 28 0 335 284 106 7 chr3 217781261 217781402 -255756 - L1MC/D LINE L1 -2001 5807 5653 222 37 0 0 chr3 217781770 217781797 -255361 + (T)n Simple_repeat Simple_repeat 1 27 0 500 167 0 0 chr3 217781875 217781959 -255199 - L1MC/D LINE L1 -476 5645 5562 2847 153 19 19 chr3 217782075 217782616 -254542 - L1PA16 LINE L1 -5 6161 5621 406 261 85 37 chr3 217784534 217784722 -252436 - L2 LINE L2 -1 3312 3116 3301 150 92 11 chr3 217785076 217785742 -251416 - L1MC1 LINE L1 -1 6332 5613 215 93 23 0 chr3 217785850 217785893 -251265 + (TTTTTA)n Simple_repeat Simple_repeat 4 47 0 367 252 55 24 chr3 217786534 217786661 -250497 - MER94 DNA DNA -1 133 3 556 239 22 0 chr3 217786869 217787007 -250151 - L2 LINE L2 -1 3312 3172 1581 276 156 8 chr3 217787090 217787724 -249434 - L2 LINE L2 -675 2639 1912 396 259 91 82 chr3 217787757 217787977 -249181 - L2 LINE L2 -1608 1706 1485 199 276 69 0 chr3 217788382 217788440 -248718 - L2 LINE L2 0 3272 3211 1669 174 82 34 chr3 217792336 217792487 -244671 + MER89 LTR ERV1 1 143 -416 2550 36 0 7 chr3 217792487 217792789 -244369 - AluY SINE Alu -11 300 1 1669 174 82 34 chr3 217792789 217793075 -244083 + MER89 LTR ERV1 143 559 0 185 245 0 0 chr3 217793149 217793198 -243960 - L2 LINE L2 -2 3311 3263 22 0 0 0 chr3 217793433 217793455 -243703 + AT_rich Low_complexity Low_complexity 1 22 0 1736 120 85 11 chr3 217794689 217794972 -242186 - AluSx SINE Alu -8 304 1 818 94 0 0 chr3 217794976 217795082 -242076 - AluSq/x SINE Alu -206 107 2 331 103 52 0 chr3 217795384 217795442 -241716 + AluSp/q SINE Alu 235 295 -8 236 403 74 13 chr3 217795551 217795700 -241458 - L2 LINE L2 -65 3207 3050 26 30 0 0 chr3 217796085 217796118 -241040 + AT_rich Low_complexity Low_complexity 1 33 0 1194 193 66 50 chr3 217796222 217796431 -240727 - L1MA9 LINE L1 -1 6311 6092 2168 131 0 0 chr3 217796431 217796729 -240429 - AluSg SINE Alu -12 298 1 1194 193 66 50 chr3 217796729 217796881 -240277 - L1MA9 LINE L1 -220 6092 5944 * 3214 189 63 136 chr3 217796868 217797818 -239340 - L1MA9 LINE L1 -1028 5118 4379 1289 111 0 5 chr3 217797818 217798007 -239151 - L1PA15 LINE L1 -17 6148 5961 3214 189 63 136 chr3 217798007 217798995 -238163 - L1MA9 LINE L1 -1767 4379 3321 240 243 110 17 chr3 217799479 217799652 -237506 - L1ME4a LINE L1 -56 6065 5877 210 267 33 89 chr3 217799878 217799968 -237190 + MIR SINE MIR 33 117 -91 30 45 0 0 chr3 217800128 217800172 -236986 + AT_rich Low_complexity Low_complexity 1 44 0 2025 127 7 13 chr3 217800185 217800485 -236673 - AluSx SINE Alu -14 298 1 1137 141 12 12 chr3 217800674 217800844 -236314 - AluSx SINE Alu -142 170 1 479 326 125 58 chr3 217800844 217800967 -236191 - HAL1 LINE L1 -1626 881 768 1965 113 32 3 chr3 217800967 217801251 -235907 - AluSx SINE Alu -20 292 1 479 326 125 58 chr3 217801251 217801295 -235863 - HAL1 LINE L1 -1739 768 728 3517 174 28 30 chr3 217801295 217802069 -235089 - L1MB8 LINE L1 0 6178 5406 479 326 125 58 chr3 217802069 217802379 -234779 - HAL1 LINE L1 -1779 728 371 2358 102 3 0 chr3 217802384 217802689 -234469 - AluSx SINE Alu -6 306 1 242 213 16 0 chr3 217804257 217804318 -232840 + CT-rich Low_complexity Low_complexity 1 62 0 210 330 58 55 chr3 217804372 217804574 -232584 + MIR3 SINE MIR 2 196 -61 377 303 211 49 chr3 217804935 217805447 -231711 - L3 LINE CR1 -23 1554 960 603 33 33 11 chr3 217805856 217805946 -231212 + (TAGA)n Simple_repeat Simple_repeat 3 94 0 2326 86 3 3 chr3 217806093 217806397 -230761 + AluSc SINE Alu 1 304 -5 304 172 16 47 chr3 217806429 217806493 -230665 + MLT1F LTR MaLR 1 62 -480 1116 186 47 165 chr3 217806530 217806793 -230365 + MLT1A1 LTR MaLR 1 197 -177 1764 159 10 7 chr3 217806793 217807101 -230057 - AluSg1 SINE Alu 0 309 1 1116 186 47 165 chr3 217807101 217807261 -229897 + MLT1A1 LTR MaLR 197 374 0 * 1769 193 14 63 chr3 217807261 217807696 -229462 + MLT1F LTR MaLR 128 540 -2 182 298 170 0 chr3 217808014 217808108 -229050 + L2 LINE L2 3147 3256 -16 407 244 35 26 chr3 217808462 217808577 -228581 + MIR SINE MIR 19 134 -74 268 246 181 6 chr3 217808761 217808852 -228306 + MIR SINE MIR 20 122 -86 264 59 0 0 chr3 217809134 217809168 -227990 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 205 185 0 56 chr3 217809384 217809438 -227720 + C-rich Low_complexity Low_complexity 3 53 0 222 266 18 28 chr3 217810047 217810156 -227002 + (CGGG)n Simple_repeat Simple_repeat 2 109 0 25 0 0 0 chr3 217810190 217810215 -226943 + GC_rich Low_complexity Low_complexity 1 25 0 329 210 91 155 chr3 217810215 217810511 -226647 - L1M2 LINE L1 -5892 957 657 23 0 0 0 chr3 217811444 217811467 -225691 + AT_rich Low_complexity Low_complexity 1 23 0 287 286 24 12 chr3 217812176 217812260 -224898 - MIR3 SINE MIR -3 205 121 183 306 153 27 chr3 217812310 217812421 -224737 + MIR3 SINE MIR 30 154 -54 323 315 27 9 chr3 217812888 217812999 -224159 - L1MC5 LINE L1 -45 7916 7804 214 186 0 0 chr3 217813178 217813221 -223937 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 2437 81 0 37 chr3 217813415 217813738 -223420 - AluY SINE Alu 0 311 1 475 115 0 0 chr3 217813874 217813935 -223223 - AluS SINE Alu -251 62 2 1060 261 163 14 chr3 217814920 217814996 -222162 - MLT1J LTR MaLR 0 511 448 2438 94 0 0 chr3 217814996 217815293 -221865 + AluSg SINE Alu 1 297 -13 1060 261 163 14 chr3 217815293 217815652 -221506 - MLT1J LTR MaLR -63 448 11 577 158 0 0 chr3 217815868 217815963 -221195 - AluJb SINE Alu -16 296 202 653 329 117 78 chr3 217816754 217817091 -220067 + L3 LINE CR1 813 1135 -442 2029 134 10 0 chr3 217817091 217817381 -219777 + AluSx SINE Alu 1 293 -19 653 329 117 78 chr3 217817381 217817778 -219380 + L3 LINE CR1 1135 1576 -1 493 236 62 0 chr3 217817784 217817928 -219230 - L1MD1 LINE L1 0 6242 6090 234 325 39 112 chr3 217817962 217818168 -218990 - L2 LINE L2 -90 3182 2992 1809 153 0 51 chr3 217818282 217818596 -218562 - AluJb SINE Alu -14 298 1 413 259 78 98 chr3 217819164 217819369 -217789 - MIR3 SINE MIR -3 205 5 2358 83 3 3 chr3 217820271 217820561 -216597 - AluSp SINE Alu -23 290 1 1645 146 68 14 chr3 217821465 217821745 -215413 + AluJb SINE Alu 1 295 -17 812 96 19 26 chr3 217821745 217821901 -215257 + (GGGAA)n Simple_repeat Simple_repeat 2 156 0 611 210 86 6 chr3 217821953 217822115 -215043 - MER96 DNA MER1_type 0 175 1 2462 83 3 13 chr3 217822127 217822439 -214719 - AluY SINE Alu -2 309 1 252 252 165 17 chr3 217822496 217822611 -214547 + MER5B DNA MER1_type 36 167 -11 218 208 198 47 chr3 217825090 217825196 -211962 - MIR3 SINE MIR -36 172 51 2111 96 53 0 chr3 217825324 217825605 -211553 + AluSx SINE Alu 1 296 -16 438 308 142 24 chr3 217826448 217826617 -210541 + MER91A DNA MER1_type 1 189 -7 1619 199 0 17 chr3 217826981 217827283 -209875 + AluJb SINE Alu 3 299 -13 497 272 47 31 chr3 217827361 217827552 -209606 - L3 LINE CR1 -87 1490 1297 258 367 23 57 chr3 217828068 217828245 -208913 + L2 LINE L2 3102 3272 0 226 65 22 22 chr3 217828478 217828524 -208634 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 2435 95 0 13 chr3 217828810 217829127 -208031 + AluSq SINE Alu 1 313 0 199 317 33 11 chr3 217829427 217829505 -207653 - MIR3 SINE MIR -20 242 158 1024 181 24 29 chr3 217829505 217829715 -207443 + MER3 DNA MER1_type 1 209 0 199 317 33 11 chr3 217829715 217829756 -207402 - MIR3 SINE MIR -104 158 119 2055 186 84 46 chr3 217830057 217830126 -207032 - MLT1F LTR MaLR 0 542 477 2417 126 11 32 chr3 217830126 217830498 -206660 - THE1B LTR MaLR 0 364 1 11695 88 30 3 chr3 217830498 217832036 -205122 - THE1B-int LTR MaLR 0 1580 1 1994 100 137 30 chr3 217832036 217832365 -204793 - THE1B LTR MaLR 0 364 1 2055 186 84 46 chr3 217832365 217832815 -204343 - MLT1F LTR MaLR -64 478 1 366 289 45 49 chr3 217832815 217833019 -204139 - MIR SINE MIR -52 210 2 2452 65 3 0 chr3 217833086 217833376 -203782 - AluY SINE Alu -7 304 14 2473 87 0 3 chr3 217833552 217833861 -203297 + AluSc SINE Alu 1 308 -1 349 135 0 0 chr3 217833875 217833927 -203231 + 5S rRNA rRNA 4 55 -66 353 287 140 29 chr3 217833947 217834083 -203075 + L1M4 LINE L1 4067 4217 -1929 1684 190 63 14 chr3 217834286 217834634 -202524 - MLT1A1 LTR MaLR 0 365 1 304 354 23 29 chr3 217834918 217835093 -202065 + MIR SINE MIR 39 212 -50 2227 103 7 13 chr3 217835419 217835719 -201439 - AluSq SINE Alu -15 298 1 285 266 35 21 chr3 217836985 217837128 -200030 + (TCTCTG)n Simple_repeat Simple_repeat 3 147 0 208 204 0 21 chr3 217837142 217837235 -199923 + CT-rich Low_complexity Low_complexity 2 92 0 438 202 11 69 chr3 217837244 217837432 -199726 + (TCTCTG)n Simple_repeat Simple_repeat 2 178 0 627 199 72 33 chr3 217838130 217838321 -198837 - MIR3 SINE MIR -52 156 8 322 324 49 7 chr3 217839297 217839439 -197719 - L2 LINE L2 -5 3308 3161 2128 94 25 0 chr3 217839470 217839747 -197411 - AluSg SINE Alu -26 284 1 221 225 0 0 chr3 217839748 217839788 -197370 - L2 LINE L2 -11 3302 3263 285 304 22 22 chr3 217839910 217840002 -197156 + L2 LINE L2 3138 3229 -43 192 40 0 0 chr3 217840124 217840149 -197009 + (TC)n Simple_repeat Simple_repeat 1 25 0 324 0 0 0 chr3 217840152 217840188 -196970 + (CA)n Simple_repeat Simple_repeat 1 36 0 409 140 6 79 chr3 217840335 217840453 -196705 + MLT1J LTR MaLR 84 257 -341 384 245 21 0 chr3 217840802 217840896 -196262 + L1MC5 LINE L1 7762 7857 -104 2345 181 36 2 chr3 217840896 217841344 -195814 + L1MB2 LINE L1 5707 6169 -2 2027 128 10 10 chr3 217841349 217841646 -195512 + AluSx SINE Alu 1 297 -15 2257 102 3 0 chr3 217842282 217842575 -194583 - AluSx SINE Alu -18 294 1 447 96 0 27 chr3 217843000 217843073 -194085 + Alu SINE Alu 1 71 -247 343 279 57 25 chr3 217843139 217843261 -193897 + L1MC4 LINE L1 6578 6703 -1339 * 364 301 0 65 chr3 217843173 217843296 -193862 - L1MC4 LINE L1 -1339 6703 6589 527 161 12 0 chr3 217843365 217843446 -193712 - AluSg/x SINE Alu -126 184 103 2273 97 0 3 chr3 217843943 217844231 -192927 - AluSx SINE Alu -19 293 7 241 296 49 49 chr3 217844305 217844447 -192711 + L1MC4a LINE L1 4817 4958 -1188 2225 130 7 0 chr3 217844465 217844773 -192385 + AluSx SINE Alu 1 310 -2 513 248 40 30 chr3 217844786 217845163 -191995 + L1MC4a LINE L1 5175 5582 -539 1961 124 14 7 chr3 217845285 217845575 -191583 + AluSc SINE Alu 15 306 -3 305 278 76 25 chr3 217845575 217845773 -191385 + L1MC4a LINE L1 5726 5933 -1875 204 309 168 20 chr3 217845986 217846135 -191023 - L2 LINE L2 0 3313 3143 701 132 24 0 chr3 217846256 217846423 -190735 + (TG)n Simple_repeat Simple_repeat 1 171 0 375 169 47 23 chr3 217846517 217846689 -190469 + (TG)n Simple_repeat Simple_repeat 1 176 0 181 314 0 0 chr3 217846944 217846995 -190163 - L2 LINE L2 -2 3270 3220 28 0 0 0 chr3 217847051 217847079 -190079 + AT_rich Low_complexity Low_complexity 1 28 0 276 329 54 61 chr3 217847118 217847413 -189745 - L2 LINE L2 -519 2795 2503 346 251 162 0 chr3 217848293 217848460 -188698 + LTR33 LTR ERVL 1 194 -327 1686 216 59 30 chr3 217848507 217848787 -188371 - MER69 DNA AcHobo -72 2454 2184 2326 92 0 0 chr3 217848787 217849096 -188062 - AluSx SINE Alu 0 309 1 1686 216 59 30 chr3 217849096 217849355 -187803 - MER69 DNA AcHobo -342 2184 1898 275 228 0 0 chr3 217849404 217849461 -187697 - MER69 DNA AcHobo -587 1939 1883 393 281 55 14 chr3 217849543 217849689 -187469 + LTR16A1 LTR ERVL 306 457 0 652 258 28 0 chr3 217849690 217849868 -187290 - MER69 DNA AcHobo -640 1886 1704 1322 216 178 19 chr3 217849886 217850236 -186922 - MER69 DNA AcHobo -468 758 465 2325 115 0 0 chr3 217850236 217850532 -186626 + AluSx SINE Alu 1 296 -16 1322 216 178 19 chr3 217850532 217850808 -186350 - MER69 DNA AcHobo -761 465 1 379 259 123 12 chr3 217850912 217851074 -186084 + LTR33 LTR ERVL 335 514 -7 251 222 144 44 chr3 217852135 217852225 -184933 + U13 snRNA snRNA 4 102 -2 1651 82 5 0 chr3 217852371 217852579 -184579 + AluSx SINE Alu 6 214 -98 1034 111 14 0 chr3 217852579 217852723 -184435 + AluSg/x SINE Alu 165 310 -2 420 279 37 15 chr3 217852923 217853059 -184099 + MIR3 SINE MIR 38 176 -32 2464 77 3 0 chr3 217853059 217853359 -183799 + AluSg SINE Alu 2 302 -8 294 311 22 0 chr3 217853442 217853554 -183604 + MIR SINE MIR 9 128 -80 589 288 43 48 chr3 217854132 217854374 -182784 + MIR SINE MIR 3 249 -13 185 367 13 25 chr3 217854708 217854787 -182371 + L2 LINE L2 3009 3086 -186 503 279 52 29 chr3 217855191 217855363 -181795 - MIR SINE MIR -39 223 48 2395 88 3 3 chr3 217856474 217856781 -180377 + AluSx SINE Alu 1 307 -5 372 22 0 0 chr3 217857691 217857736 -179422 + (CTG)n Simple_repeat Simple_repeat 2 46 0 1442 74 21 0 chr3 217858165 217858354 -178804 + L1PA7 LINE L1 5962 6154 0 1955 96 14 0 chr3 217858610 217858892 -178266 + L1MA1 LINE L1 6017 6302 0 350 115 33 0 chr3 217858922 217858983 -178175 + MER53 DNA DNA 125 187 -2 351 288 86 102 chr3 217858989 217859430 -177728 + L2 LINE L2 1945 2367 -947 1942 107 0 8 chr3 217859430 217859683 -177475 - AluSg SINE Alu -59 251 1 351 288 86 102 chr3 217859683 217860070 -177088 + L2 LINE L2 2367 2759 -555 264 244 0 56 chr3 217860552 217860642 -176516 - L1ME4a LINE L1 -66 6055 5971 2220 102 0 32 chr3 217860738 217861053 -176105 + AluSc SINE Alu 1 305 -4 2008 103 4 0 chr3 217861181 217861442 -175716 + AluSp SINE Alu 37 298 -15 320 265 88 0 chr3 217861681 217861783 -175375 + L1ME4a LINE L1 5967 6077 -44 2134 109 3 0 chr3 217862519 217862825 -174333 - AluSx SINE Alu 0 307 1 235 255 0 0 chr3 217863436 217863487 -173671 - L2 LINE L2 0 3313 3263 195 409 11 11 chr3 217863583 217863671 -173487 - L2 LINE L2 -79 3193 3106 2245 110 0 0 chr3 217864009 217864309 -172849 - AluSx SINE Alu -12 300 1 2293 92 3 0 chr3 217864390 217864709 -172449 + AluSx SINE Alu 1 320 0 2348 97 0 6 chr3 217866126 217866437 -170721 - AluSg SINE Alu -1 309 1 2399 85 0 0 chr3 217867041 217867336 -169822 + AluSq SINE Alu 1 295 -18 814 49 0 0 chr3 217867336 217867438 -169720 + L1PA5 LINE L1 6052 6153 -1 195 42 0 0 chr3 217867443 217867467 -169691 + (TAAAA)n Simple_repeat Simple_repeat 3 26 0 2201 79 6 31 chr3 217867594 217867911 -169247 - AluSc SINE Alu 0 309 1 198 355 136 0 chr3 217868109 217868219 -168939 - L2 LINE L2 -1 3271 3147 500 213 70 54 chr3 217868489 217868545 -168613 - L1MD3 LINE L1 -20 7975 7921 2236 113 0 0 chr3 217868545 217868836 -168322 + AluSx SINE Alu 7 297 -15 500 213 70 54 chr3 217868836 217869530 -167628 - L1MD3 LINE L1 -74 7921 5574 2107 141 0 3 chr3 217869537 217869850 -167308 - AluSx SINE Alu 0 312 1 1761 130 7 22 chr3 217869850 217870120 -167038 - AluJb SINE Alu -18 294 29 1742 191 31 64 chr3 217870139 217870625 -166533 - L1ME1 LINE L1 -5 6161 5692 245 243 0 27 chr3 217870872 217870946 -166212 - MIR SINE MIR -109 153 82 3535 244 70 50 chr3 217871290 217871716 -165442 + L1MEc LINE L1 1014 1430 -4785 2056 116 4 0 chr3 217871716 217871993 -165165 + AluSq SINE Alu 8 285 -28 3535 244 70 50 chr3 217871993 217872783 -164375 + L1MEc LINE L1 1430 2203 -4012 189 74 0 0 chr3 217872783 217872810 -164348 + (TTATA)n Simple_repeat Simple_repeat 3 29 0 3535 244 70 50 chr3 217872810 217873597 -163561 + L1MEc LINE L1 2203 3013 -3202 614 309 46 0 chr3 217873793 217874010 -163148 - MIR SINE MIR -32 230 4 310 236 101 0 chr3 217874274 217874363 -162795 + MIR SINE MIR 74 171 -91 21 0 0 0 chr3 217874479 217874500 -162658 + AT_rich Low_complexity Low_complexity 1 21 0 2831 168 39 27 chr3 217875000 217875517 -161641 + L1MB2 LINE L1 5601 6127 -44 2124 107 7 13 chr3 217875517 217875815 -161343 + AluSg SINE Alu 1 296 -14 2831 168 39 27 chr3 217875815 217875858 -161300 + L1MB2 LINE L1 6127 6168 -3 184 293 40 27 chr3 217876047 217876122 -161036 - MIR SINE MIR -100 108 33 303 223 110 23 chr3 217876348 217876544 -160614 + HAL1b LINE L1 1187 1334 -14 3828 186 65 138 chr3 217877005 217877993 -159165 + L1MEc LINE L1 3390 4170 -2045 1321 111 0 5 chr3 217877993 217878182 -158976 + L1PA15 LINE L1 5961 6148 -17 3828 186 65 138 chr3 217878182 217879132 -158026 + L1MEc LINE L1 4170 5187 -1028 1330 191 66 50 chr3 217879119 217879271 -157887 + L1MA9 LINE L1 5944 6092 -220 * 2182 131 0 0 chr3 217879271 217879569 -157589 + AluSg SINE Alu 1 298 -12 1330 191 66 50 chr3 217879569 217879778 -157380 + L1MA9 LINE L1 6092 6311 -1 26 30 0 0 chr3 217879882 217879915 -157243 + AT_rich Low_complexity Low_complexity 1 33 0 182 403 74 13 chr3 217880300 217880449 -156709 + L2 LINE L2 3050 3207 -65 367 86 52 0 chr3 217880558 217880616 -156542 - AluSp/q SINE Alu -8 295 235 840 94 0 0 chr3 217880918 217881024 -156134 + AluSq/x SINE Alu 2 107 -205 1768 120 85 11 chr3 217881028 217881311 -155847 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr3 217882545 217882567 -154591 + AT_rich Low_complexity Low_complexity 1 22 0 1832 174 82 34 chr3 217882925 217883211 -153947 - MER89 LTR ERV1 0 559 288 2611 36 0 7 chr3 217883211 217883513 -153645 + AluY SINE Alu 1 300 -11 1832 174 82 34 chr3 217883513 217883664 -153494 - MER89 LTR ERV1 -271 288 1 2157 118 10 0 chr3 217883769 217884066 -153092 - AluSx SINE Alu -12 300 1 1141 141 12 12 chr3 217884255 217884425 -152733 - AluSx SINE Alu -142 170 1 252 229 145 12 chr3 217884425 217884508 -152650 - HAL1 LINE L1 -1626 881 788 1992 113 32 3 chr3 217884548 217884832 -152326 - AluSx SINE Alu -20 292 1 3664 178 28 30 chr3 217884876 217885650 -151508 - L1MB8 LINE L1 0 6178 5406 251 335 134 20 chr3 217885706 217885960 -151198 - HAL1 LINE L1 -1854 653 371 2378 101 3 0 chr3 217885965 217886271 -150887 - AluSx SINE Alu -5 307 1 242 213 16 0 chr3 217887839 217887900 -149258 + CT-rich Low_complexity Low_complexity 1 62 0 236 268 111 92 chr3 217888517 217888778 -148380 - L3 LINE CR1 -23 1554 1289 238 341 100 0 chr3 217888859 217889029 -148129 - L3 LINE CR1 -431 1146 960 531 37 37 12 chr3 217889438 217889520 -147638 + (TAGA)n Simple_repeat Simple_repeat 3 86 0 2354 86 3 3 chr3 217889667 217889971 -147187 + AluSc SINE Alu 1 304 -5 331 172 16 47 chr3 217890003 217890067 -147091 + MLT1F LTR MaLR 1 62 -480 1279 190 48 149 chr3 217890104 217890360 -146798 + MLT1A2 LTR MaLR 1 201 -173 2464 81 7 3 chr3 217890360 217890668 -146490 - AluSg1 SINE Alu 0 309 1 1279 190 48 149 chr3 217890668 217890827 -146331 + MLT1A2 LTR MaLR 201 374 0 * 1943 193 14 63 chr3 217890827 217891262 -145896 + MLT1F LTR MaLR 128 540 -2 381 250 27 27 chr3 217892027 217892139 -145019 + MIR SINE MIR 19 130 -78 245 240 187 0 chr3 217892342 217892417 -144741 + MIR SINE MIR 34 122 -86 264 59 0 0 chr3 217892699 217892733 -144425 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 205 185 0 56 chr3 217892949 217893003 -144155 + C-rich Low_complexity Low_complexity 3 53 0 21 0 0 0 chr3 217893636 217893657 -143501 + GC_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr3 217893755 217893780 -143378 + GC_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr3 217895009 217895032 -142126 + AT_rich Low_complexity Low_complexity 1 23 0 258 286 24 12 chr3 217895741 217895825 -141333 - MIR3 SINE MIR -3 205 121 229 317 30 0 chr3 217896453 217896554 -140604 - L1MC5 LINE L1 -45 7916 7813 214 186 0 0 chr3 217896743 217896786 -140372 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 2387 78 3 37 chr3 217896980 217897302 -139856 - AluY SINE Alu 0 311 1 3813 178 28 9 chr3 217899078 217899823 -137335 - L1MB2 LINE L1 -36 6135 5375 299 345 0 0 chr3 217899888 217900001 -137157 - MIR SINE MIR -119 143 31 369 0 0 0 chr3 217900330 217900371 -136787 + (TG)n Simple_repeat Simple_repeat 2 42 0 2009 224 119 53 chr3 217900657 217900755 -136403 - L1MC4 LINE L1 -371 7671 7581 1518 116 205 0 chr3 217900755 217901014 -136144 - AluJb SINE Alu 0 312 1 2009 224 119 53 chr3 217901014 217901730 -135428 - L1MC4 LINE L1 -461 7581 6803 225 207 52 0 chr3 217901992 217902050 -135108 - L1MC4 LINE L1 -635 7407 7347 22 0 0 0 chr3 217902162 217902184 -134974 + AT_rich Low_complexity Low_complexity 1 22 0 306 73 0 0 chr3 217902306 217902347 -134811 + (TG)n Simple_repeat Simple_repeat 2 42 0 387 0 0 0 chr3 217902904 217902947 -134211 + (TATG)n Simple_repeat Simple_repeat 2 44 0 2313 96 10 0 chr3 217902947 217903249 -133909 - AluSp SINE Alu -8 305 1 2401 94 0 0 chr3 217903296 217903605 -133553 - AluSc SINE Alu 0 309 1 406 291 93 25 chr3 217903605 217903969 -133189 - L1ME LINE L1 -328 5793 5405 415 140 108 43 chr3 217904414 217904507 -132651 - L1MC2 LINE L1 -2 6342 6244 1280 192 80 14 chr3 217904521 217904797 -132361 + AluSx SINE Alu 1 294 -18 530 237 89 7 chr3 217904809 217904944 -132214 + AluJb SINE Alu 146 291 -21 4129 168 68 29 chr3 217904945 217905114 -132044 - L1MC2 LINE L1 -130 6214 6053 1637 152 145 7 chr3 217905114 217905410 -131748 + MER1B DNA MER1_type 1 337 0 4129 168 68 29 chr3 217905410 217906231 -130927 - L1MC2 LINE L1 -291 6053 5188 263 200 0 33 chr3 217907348 217907408 -129750 + (TG)n Simple_repeat Simple_repeat 2 59 0 233 211 53 0 chr3 217907408 217907465 -129693 - MIR SINE MIR -73 189 130 2340 90 3 0 chr3 217907530 217907831 -129327 + AluSx SINE Alu 1 302 -10 22 35 0 0 chr3 217908167 217908196 -128962 + AT_rich Low_complexity Low_complexity 1 29 0 26 30 0 0 chr3 217908235 217908268 -128890 + AT_rich Low_complexity Low_complexity 1 33 0 251 332 251 11 chr3 217908441 217908628 -128530 - MIR SINE MIR -1 261 30 27 0 0 0 chr3 217909077 217909104 -128054 + AT_rich Low_complexity Low_complexity 1 27 0 444 326 53 21 chr3 217909829 217910016 -127142 - MIR3 SINE MIR -5 203 11 1010 217 157 26 chr3 217910208 217910356 -126802 + MSTD LTR MaLR 1 128 -268 2033 104 3 52 chr3 217910356 217910665 -126493 + AluSq SINE Alu 5 298 -15 1010 217 157 26 chr3 217910665 217910866 -126292 + MSTD LTR MaLR 128 396 0 4400 110 61 3 chr3 217911076 217911319 -125839 + L1MA4 LINE L1 5532 5759 -541 243 0 0 0 chr3 217911319 217911346 -125812 + (CA)n Simple_repeat Simple_repeat 2 28 0 4400 110 61 3 chr3 217911346 217911820 -125338 + L1MA4 LINE L1 5759 6291 -9 225 328 84 0 chr3 217913055 217913174 -123984 + HAL1b LINE L1 1135 1263 -85 1442 147 9 112 chr3 217913176 217913372 -123786 - AluJo SINE Alu 0 312 166 2207 117 7 0 chr3 217913372 217913680 -123478 - AluSx SINE Alu -2 310 1 1442 147 9 112 chr3 217913680 217913831 -123327 - AluJo SINE Alu -146 166 1 1802 153 0 33 chr3 217914042 217914342 -122816 + AluSx SINE Alu 1 290 -22 2099 129 0 16 chr3 217914491 217914808 -122350 + AluJb SINE Alu 1 312 0 243 176 118 15 chr3 217915131 217915199 -121959 + L1P LINE L1 5354 5428 -737 305 335 163 5 chr3 217915379 217915600 -121558 + L1MC4a LINE L1 5678 5933 -1875 5347 153 58 19 chr3 217915666 217916476 -120682 - L1MA4 LINE L1 -11 6289 5512 2082 124 3 10 chr3 217916476 217916782 -120376 - AluSg SINE Alu -6 304 1 5347 153 58 19 chr3 217916782 217917155 -120003 - L1MA4 LINE L1 -788 5512 5155 273 119 0 0 chr3 217917155 217917197 -119961 + (TCGTG)n Simple_repeat Simple_repeat 4 45 0 5347 153 58 19 chr3 217917197 217917939 -119219 - L1MA4 LINE L1 -1145 5155 4303 304 298 39 10 chr3 217918051 217918155 -119003 - HAL1 LINE L1 -2375 132 26 2160 109 33 0 chr3 217918155 217918457 -118701 + AluSx SINE Alu 1 312 0 276 30 0 0 chr3 217918471 217918504 -118654 + (CA)n Simple_repeat Simple_repeat 2 34 0 618 167 10 21 chr3 217918662 217918802 -118356 + L1MB7 LINE L1 6039 6180 0 * 1074 222 108 28 chr3 217918788 217919140 -118018 - L1ME3A LINE L1 -106 6064 5685 815 219 6 0 chr3 217919322 217919486 -117672 - FRAM SINE Alu 0 166 2 321 273 107 54 chr3 217919784 217919989 -117169 - L1MC4 LINE L1 -68 7974 7759 324 226 41 68 chr3 217920151 217920297 -116861 - LTR16A1 LTR ERVL 0 457 316 317 228 21 76 chr3 217920630 217920857 -116301 - L1MC4 LINE L1 -412 7630 7307 258 296 64 30 chr3 217920849 217921052 -116106 - L1MC4a LINE L1 -414 7394 7185 * 259 195 63 47 chr3 217921068 217921196 -115962 - L1MC4 LINE L1 -740 7221 7094 300 315 55 24 chr3 217921388 217921553 -115605 - L1MC4 LINE L1 -1035 7007 6838 25 83 0 0 chr3 217921737 217921797 -115361 + AT_rich Low_complexity Low_complexity 1 60 0 3577 158 64 26 chr3 217922293 217923055 -114103 + Tigger3b DNA MER2_type 1 791 -440 1230 132 28 24 chr3 217923055 217923267 -113891 + AluJo SINE Alu 82 294 -18 25 0 0 0 chr3 217924488 217924513 -112645 + AT_rich Low_complexity Low_complexity 1 25 0 667 293 80 8 chr3 217924705 217925081 -112077 - L1MEc LINE L1 -5004 1392 990 989 192 5 32 chr3 217925081 217925300 -111858 - AluJo SINE Alu -21 291 79 2384 215 149 13 chr3 217925341 217925637 -111521 - L1MEc LINE L1 -5422 974 720 2254 101 0 0 chr3 217925637 217925933 -111225 - AluSg SINE Alu -14 296 1 2384 215 149 13 chr3 217925933 217926352 -110806 - L1MEc LINE L1 -5676 720 161 1310 160 12 45 chr3 217926843 217926976 -110182 - MER46A DNA MER2_type -2495 236 113 2237 114 0 10 chr3 217926976 217927283 -109875 + AluSq SINE Alu 1 304 -9 1310 160 12 45 chr3 217927283 217927393 -109765 - MER46A DNA MER2_type -2618 113 1 207 240 101 124 chr3 217927809 217927888 -109270 - L2 LINE L2 0 3272 3196 2261 119 0 0 chr3 217927888 217928198 -108960 - AluSx SINE Alu -2 310 1 207 240 101 124 chr3 217928198 217928247 -108911 - L2 LINE L2 -76 3196 3147 205 333 62 12 chr3 217928258 217928339 -108819 - MIR3 SINE MIR -8 200 116 2174 177 123 149 chr3 217928859 217929717 -107441 - MER21B LTR ERV1 -27 836 1 240 217 83 33 chr3 217929792 217929852 -107306 - MIR SINE MIR -40 222 160 259 215 127 0 chr3 217929939 217930018 -107140 - MIR SINE MIR 0 262 174 953 184 0 0 chr3 217930254 217930412 -106746 - AluJ SINE Alu -24 288 131 279 0 0 0 chr3 217930917 217930948 -106210 + (T)n Simple_repeat Simple_repeat 1 31 0 24 0 0 0 chr3 217932758 217932782 -104376 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr3 217934465 217934493 -102665 + AT_rich Low_complexity Low_complexity 1 28 0 226 167 24 0 chr3 217935327 217935369 -101789 + MER58A DNA MER1_type 1 43 -181 * 786 214 0 0 chr3 217935364 217935509 -101649 + MER58B DNA MER1_type 197 341 0 1170 233 197 27 chr3 217935765 217936212 -100946 - L1ME3 LINE L1 -29 6133 5611 1970 107 24 40 chr3 217936630 217936928 -100230 - AluSx SINE Alu -19 293 1 229 211 35 35 chr3 217936943 217937057 -100101 - L1M4c LINE L1 -5295 1664 1551 325 228 110 66 chr3 217937059 217937195 -99963 - L1M4c LINE L1 -5345 1514 1373 1883 147 111 26 chr3 217937737 217937767 -99391 - L1MC/D LINE L1 -561 5681 5655 1659 175 50 21 chr3 217937767 217938145 -99013 - L1MD1 LINE L1 0 6242 5854 1883 147 111 26 chr3 217938145 217938747 -98411 - L1MC/D LINE L1 -587 5655 4984 330 89 0 0 chr3 217938750 217938806 -98352 - L1MB4 LINE L1 0 6180 6125 422 227 27 18 chr3 217938845 217938955 -98203 - L1MB3 LINE L1 -42 6141 6031 2024 202 40 21 chr3 217938969 217939439 -97719 - L1MB3 LINE L1 -46 6137 5659 5669 198 83 70 chr3 217939800 217940475 -96683 - L1 LINE L1 -789 5539 4874 625 121 129 9 chr3 217940475 217940591 -96567 - AluJ SINE Alu -179 133 4 5669 198 83 70 chr3 217940591 217940692 -96466 - L1 LINE L1 -1454 4874 4776 1754 136 50 0 chr3 217940692 217940971 -96187 - AluSx SINE Alu -4 308 16 5669 198 83 70 chr3 217940971 217941100 -96058 - L1 LINE L1 -1552 4776 4650 2232 110 0 3 chr3 217941100 217941409 -95749 - AluSg SINE Alu 0 310 3 5669 198 83 70 chr3 217941409 217942701 -94457 - L1 LINE L1 -1678 4650 3218 547 190 0 0 chr3 217942703 217942803 -94355 - FRAM SINE Alu -16 160 61 1123 204 63 8 chr3 217942978 217943219 -93939 + LTR10B LTR ERV1 312 537 -10 1877 243 75 74 chr3 217943225 217944236 -92922 + HERVI LTR ERV1 1 1012 -6773 2093 237 30 17 chr3 217944361 217944889 -92269 + BaEV-int LTR ERV1 856 1390 -5259 * 7905 228 11 27 chr3 217944875 217947149 -90009 + BaEV-int LTR ERV1 2608 5827 -1958 5456 186 10 11 chr3 217947160 217948145 -89013 + BaEV-int LTR ERV1 6414 7397 -388 520 292 39 6 chr3 217948128 217948306 -88852 + BaEV-int LTR ERV1 6466 6649 0 * 1169 216 61 7 chr3 217948483 217948734 -88424 + LTR10B LTR ERV1 312 547 0 231 260 14 68 chr3 217948734 217948780 -88378 - AluJo/F(R)AM SINE Alu -105 197 156 497 186 31 41 chr3 217948781 217948878 -88280 - AluJ/FLAM SINE Alu -216 96 1 6036 183 67 46 chr3 217948880 217952016 -85142 - L1 LINE L1 -3106 3222 3 3591 240 23 15 chr3 217952019 217953127 -84031 - L1MDa LINE L1 -2295 4245 3130 * 3896 231 40 68 chr3 217953123 217954590 -82568 - L1MDa LINE L1 -5145 1397 1 22 0 0 0 chr3 217954836 217954858 -82300 + AT_rich Low_complexity Low_complexity 1 22 0 669 219 93 9 chr3 217955244 217955370 -81788 - L1MEc LINE L1 -4614 1782 1668 1802 175 3 7 chr3 217955370 217955679 -81479 - AluJb SINE Alu -4 308 1 669 219 93 9 chr3 217955679 217955767 -81391 - L1MEc LINE L1 -4728 1668 1550 * 1734 295 51 31 chr3 217955760 217956747 -80411 - L1MEc LINE L1 -5368 1028 23 335 278 64 120 chr3 217956870 217957262 -79896 - L1ME4a LINE L1 -22 6099 5730 1149 74 0 0 chr3 217957891 217958026 -79132 + AluSq/x SINE Alu 1 135 -177 2106 117 7 0 chr3 217958026 217958316 -78842 + AluSx SINE Alu 1 292 -20 1429 210 131 4 chr3 217958385 217958897 -78261 - L1ME4a LINE L1 -1610 4536 3911 867 151 38 13 chr3 217959331 217959490 -77668 - FRAM SINE Alu -12 164 2 1844 157 20 0 chr3 217960008 217960314 -76844 - AluJb SINE Alu 0 312 1 384 275 99 44 chr3 217961723 217961905 -75253 + MIR SINE MIR 12 203 -59 883 191 86 79 chr3 217961956 217962259 -74899 - LTR37B LTR ERV1 0 468 164 1169 152 177 17 chr3 217962261 217962498 -74660 - AluJo SINE Alu -10 302 28 830 230 83 15 chr3 217962544 217962748 -74410 - MER20 DNA MER1_type -1 218 1 2097 101 0 17 chr3 217964230 217964526 -72632 - AluSx SINE Alu -1 311 21 1839 134 7 11 chr3 217966185 217966454 -70704 + AluSx SINE Alu 29 296 -16 241 130 22 0 chr3 217966595 217966641 -70517 - L1ME3A LINE L1 -222 5948 5902 256 271 86 29 chr3 217966687 217966827 -70331 - L1ME3A LINE L1 -345 5817 5670 348 281 156 7 chr3 217966844 217967114 -70044 - L1ME3A LINE L1 -597 5567 5258 231 304 85 22 chr3 217967261 217967485 -69673 - L1ME3A LINE L1 -2711 3435 3198 231 269 13 26 chr3 217967545 217967623 -69535 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 376 221 99 50 chr3 217967765 217968068 -69090 - L1ME3A LINE L1 -2984 3162 2845 1819 167 13 0 chr3 217968080 217968385 -68773 - AluJo SINE Alu -3 309 1 2059 71 52 4 chr3 217969267 217969536 -67622 - AluY SINE Alu -29 282 1 337 89 0 18 chr3 217969554 217969610 -67548 + Alu SINE Alu 254 308 0 187 323 68 45 chr3 217969798 217969931 -67227 + MIR SINE MIR 65 200 -62 671 167 0 0 chr3 217970168 217970270 -66888 - AluS SINE Alu -211 102 1 613 205 48 33 chr3 217970369 217970579 -66579 - L1MC5 LINE L1 -26 7935 7723 31 0 0 0 chr3 217971077 217971108 -66050 + AT_rich Low_complexity Low_complexity 1 31 0 1478 175 14 3 chr3 217972705 217972991 -64167 + L1MB7 LINE L1 5887 6175 -9 225 248 116 62 chr3 217973017 217973146 -64012 + L1MC/D LINE L1 5405 5540 -2268 1185 203 71 0 chr3 217973217 217973512 -63646 - L1M4 LINE L1 -1007 5139 4824 1015 207 85 46 chr3 217973508 217973599 -63559 - L1M4 LINE L1 -1655 4491 4405 * 1798 149 6 38 chr3 217973599 217973914 -63244 - AluJb SINE Alu -7 305 1 1015 207 85 46 chr3 217973914 217974150 -63008 - L1M4 LINE L1 -1741 4405 4151 6064 148 21 4 chr3 217974206 217974559 -62599 - L1PB1 LINE L1 0 6151 5806 351 0 0 0 chr3 217974559 217974598 -62560 + (TG)n Simple_repeat Simple_repeat 1 39 0 6064 148 21 4 chr3 217974598 217975988 -61170 - L1PB1 LINE L1 -345 5806 4376 1035 127 0 140 chr3 217975990 217976237 -60921 - AluSg/x SINE Alu 0 310 112 225 0 0 0 chr3 217976949 217976974 -60184 + (TG)n Simple_repeat Simple_repeat 1 25 0 1153 157 32 16 chr3 217977004 217977189 -59969 + AluJo SINE Alu 89 276 -36 1239 279 143 30 chr3 217977454 217977987 -59171 - MLT1G1 LTR MaLR -2 593 1 2484 53 0 13 chr3 217978475 217978778 -58380 + AluY SINE Alu 2 300 -11 1279 209 69 0 chr3 217979488 217979794 -57364 - L1MC3 LINE L1 0 7785 7459 1886 75 0 8 chr3 217980553 217980793 -56365 + AluY SINE Alu 46 283 -28 24 0 0 0 chr3 217981935 217981959 -55199 + AT_rich Low_complexity Low_complexity 1 24 0 1881 163 32 15 chr3 217983601 217983939 -53219 - MER2 DNA MER2_type 0 344 1 2202 102 0 22 chr3 217984213 217984528 -52630 - AluSx SINE Alu -2 310 3 1606 150 25 150 chr3 217985788 217986228 -50930 - MLT1B LTR MaLR 0 390 6 2144 89 13 3 chr3 217986616 217986919 -50239 - AluSp SINE Alu -7 306 1 406 130 113 9 chr3 217987685 217987800 -49358 - Looper DNA T2_type -57 1501 1375 1211 229 27 59 chr3 217987813 217988188 -48970 - L1ME2 LINE L1 -11 6153 5791 2841 205 110 5 chr3 217988188 217988924 -48234 - Looper DNA T2_type -177 1381 569 2666 196 65 2 chr3 217988927 217989447 -47711 + MER68 LTR ERV1 1 553 -9 287 139 0 139 chr3 217989457 217989543 -47615 - Looper DNA T2_type -989 569 496 543 195 16 60 chr3 217989569 217989754 -47404 - Looper DNA T2_type -1375 183 7 21 0 0 0 chr3 217989876 217989897 -47261 + AT_rich Low_complexity Low_complexity 1 21 0 538 281 95 31 chr3 217990189 217990609 -46549 - L1ME2 LINE L1 -960 5186 4740 553 283 97 33 chr3 217990681 217991033 -46125 - L1MC/D LINE L1 -806 5553 5265 409 318 101 52 chr3 217991125 217991183 -45975 - L1MC/D LINE L1 -978 5168 5114 2046 62 81 0 chr3 217991183 217991455 -45703 - AluY SINE Alu -17 294 1 409 318 101 52 chr3 217991455 217992158 -45000 - L1MC/D LINE L1 -1032 5114 4370 387 297 14 7 chr3 217992182 217992194 -44964 - L1MA10 LINE L1 0 6334 6323 1155 228 118 44 chr3 217992194 217992953 -44205 - L1ME1 LINE L1 -3 6163 5346 1798 191 29 14 chr3 217992953 217993303 -43855 + MLT1C LTR MaLR 1 355 -112 531 287 85 9 chr3 217993308 217993531 -43627 - L1MC/D LINE L1 -1889 4257 4018 4644 99 63 6 chr3 217993533 217994242 -42916 - L1PA14 LINE L1 0 6161 5412 256 170 0 0 chr3 217994242 217994289 -42869 - L1P LINE L1 -2271 3875 3829 614 132 18 26 chr3 217994389 217994503 -42655 - L1P LINE L1 -2485 3661 3549 * 2252 198 61 186 chr3 217994497 217995573 -41585 - L1MC/D LINE L1 -2116 4030 3038 1082 199 84 15 chr3 217995573 217995835 -41323 - MER77 LTR ERV1 -22 583 304 2252 198 61 186 chr3 217995835 217996550 -40608 - L1MC/D LINE L1 -3108 3038 2235 1430 294 28 26 chr3 217997040 217997618 -39540 - L1MC4a LINE L1 -1906 5902 5324 417 286 149 70 chr3 217997884 217998453 -38705 - L1MC4a LINE L1 -1197 4949 4336 464 234 53 41 chr3 217998692 217998863 -38295 - MER58A DNA MER1_type -22 202 30 33 0 0 0 chr3 217998985 217999018 -38140 + AT_rich Low_complexity Low_complexity 1 33 0 1915 137 0 3 chr3 217999250 217999535 -37623 + AluJb SINE Alu 14 297 -15 935 212 91 59 chr3 217999713 218000135 -37023 + MLT1D LTR MaLR 21 497 -8 411 301 149 37 chr3 218000135 218000491 -36667 - L1MC4a LINE L1 -2062 4084 3689 1171 203 172 14 chr3 218000959 218001255 -35903 + MER2 DNA MER2_type 2 344 -1 853 215 63 58 chr3 218002201 218002266 -34892 + MER58A DNA MER1_type 1 64 -2356 1753 133 75 11 chr3 218002266 218002545 -34613 - AluSx SINE Alu -15 297 1 853 215 63 58 chr3 218002545 218002702 -34456 + MER58A DNA MER1_type 64 224 0 592 319 42 9 chr3 218002819 218003032 -34126 + MIR SINE MIR 3 222 -40 180 111 0 0 chr3 218003082 218003109 -34049 + (CCA)n Simple_repeat Simple_repeat 1 27 0 354 258 213 8 chr3 218003203 218003447 -33711 - LTR50 LTR ERVL -10 785 492 444 204 108 0 chr3 218003805 218003898 -33260 - L2 LINE L2 -1 3312 3210 1511 190 72 0 chr3 218004001 218004280 -32878 - Tigger3(Golem) DNA MER2_type -2730 299 1 374 196 206 9 chr3 218004406 218004513 -32645 - L2 LINE L2 -2017 1297 1170 5684 129 33 5 chr3 218005453 218006611 -30547 + L1PA13 LINE L1 4976 6162 -1 385 333 41 6 chr3 218006878 218007049 -30109 + L2 LINE L2 2475 2651 -663 265 203 68 0 chr3 218007049 218007123 -30035 - LTR67 LTR ERVL 0 557 479 934 135 10 72 chr3 218008487 218008680 -28478 + L1MA10 LINE L1 6147 6327 -7 3162 197 112 72 chr3 218008718 218009472 -27686 - L1MC4 LINE L1 -461 7581 6770 2133 98 0 7 chr3 218009472 218009757 -27401 - AluSq SINE Alu -30 283 1 3162 197 112 72 chr3 218009757 218010072 -27086 - L1MC4 LINE L1 -1272 6770 6469 302 305 6 36 chr3 218010423 218010590 -26568 - L1M4 LINE L1 -1071 5075 4914 786 122 43 0 chr3 218010824 218010963 -26195 - L1MB4 LINE L1 0 6180 6036 186 43 0 0 chr3 218011420 218011443 -25715 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1743 125 0 74 chr3 218011448 218011745 -25413 - AluSx SINE Alu -37 275 1 467 170 47 164 chr3 218011900 218011968 -25190 - L1ME LINE L1 -458 5663 5589 2009 115 0 24 chr3 218011968 218012255 -24903 - AluSg SINE Alu -30 280 1 467 170 47 164 chr3 218012255 218012357 -24801 - L1ME LINE L1 -532 5589 5513 2710 190 46 30 chr3 218012425 218012528 -24630 - L1MB4 LINE L1 -258 5922 5822 2129 99 0 55 chr3 218012528 218012840 -24318 + AluSg1 SINE Alu 1 295 -14 2710 190 46 30 chr3 218012840 218013745 -23413 - L1MB4 LINE L1 -358 5822 4897 369 135 162 0 chr3 218015213 218015287 -21871 + L1MC3 LINE L1 7700 7785 0 23 54 0 0 chr3 218015776 218015813 -21345 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chr3 218015871 218015903 -21255 + AT_rich Low_complexity Low_complexity 1 32 0 418 293 25 32 chr3 218016201 218016358 -20800 + MIR SINE MIR 9 164 -98 241 232 0 141 chr3 218017215 218017314 -19844 + MIR SINE MIR 60 144 -118 2300 92 0 35 chr3 218017707 218018024 -19134 - AluSp SINE Alu -7 306 1 1418 170 67 4 chr3 218018025 218018330 -18828 - L1M3 LINE L1 -620 5799 5475 3360 215 23 33 chr3 218018343 218019370 -17788 - L1M3 LINE L1 -1028 5354 4204 * 10829 159 81 50 chr3 218019365 218020398 -16760 - L1M3 LINE L1 -3439 2943 1943 1637 136 0 66 chr3 218020398 218020719 -16439 - AluJb SINE Alu 0 301 1 10829 159 81 50 chr3 218020719 218021675 -15483 - L1M3 LINE L1 -4439 1943 1018 2379 71 0 0 chr3 218021675 218021972 -15186 - AluY SINE Alu -14 297 1 10829 159 81 50 chr3 218021972 218022032 -15126 - L1M3 LINE L1 -5364 1018 961 2141 115 6 16 chr3 218022032 218022345 -14813 - AluSg SINE Alu 0 310 1 10829 159 81 50 chr3 218022345 218023140 -14018 - L1M3 LINE L1 -5421 961 5 27 0 0 0 chr3 218023646 218023673 -13485 + AT_rich Low_complexity Low_complexity 1 27 0 472 115 103 0 chr3 218023678 218023756 -13402 + AluSg/x SINE Alu 212 297 -13 763 230 101 14 chr3 218026560 218026769 -10389 + MIR SINE MIR 36 262 0 24 53 0 0 chr3 218026830 218026868 -10290 + AT_rich Low_complexity Low_complexity 1 38 0 48 0 0 0 chr3 218027030 218027078 -10080 + AT_rich Low_complexity Low_complexity 1 48 0 1682 178 0 7 chr3 218027489 218027792 -9366 - AluJo SINE Alu -11 301 1 26 64 0 0 chr3 218027845 218027892 -9266 + AT_rich Low_complexity Low_complexity 1 47 0 1820 181 0 13 chr3 218029364 218029663 -7495 + AluJb SINE Alu 1 295 -17 431 318 10 10 chr3 218029697 218029889 -7269 - L1ME3A LINE L1 -219 5951 5760 1745 125 100 31 chr3 218029896 218030247 -6911 - THE1C LTR MaLR 0 375 1 663 236 62 26 chr3 218031380 218031676 -5482 + L2 LINE L2 1827 2178 -1136 241 263 184 0 chr3 218031731 218031807 -5351 + L2 LINE L2 2434 2523 -791 551 285 40 64 chr3 218031936 218032291 -4867 - MLT1G3 LTR MaLR -196 346 1 1028 171 65 34 chr3 218032778 218033041 -4117 - Tigger6 DNA MER2_type 0 1597 1327 629 257 130 10 chr3 218033053 218033360 -3798 + L1MC/D LINE L1 3083 3426 -2720 * 664 215 82 56 chr3 218033356 218033447 -3711 + L1MC/D LINE L1 4101 4188 -1958 2834 6 0 0 chr3 218033447 218033758 -3400 + AluYa5 SINE Alu 1 311 0 664 215 82 56 chr3 218033758 218033899 -3259 + L1MC/D LINE L1 4188 4339 -1807 312 287 28 19 chr3 218034026 218034134 -3024 + L1MC/D LINE L1 5482 5590 -531 263 191 0 0 chr3 218034192 218034239 -2919 + L1MC/D LINE L1 5765 5811 -1997 12054 126 17 30 chr3 218035181 218037157 -1 + Tigger1 DNA MER2_type 1 1951 -467